# hmmscan :: search sequence(s) against a profile database
# HMMER 3.2.1 (June 2018); http://hmmer.org/
# Copyright (C) 2018 Howard Hughes Medical Institute.
# Freely distributed under the BSD open source license.
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file:             /oak/stanford/groups/akundaje/marinovg/genomes/Haptophyta/Chrysochromulina_sp._CCMP291-Ctobinv2/GCA_001275005.1_Ctobinv2_protein.faa
# target HMM database:             /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm
# output directed to file:         /oak/stanford/groups/akundaje/marinovg/genomes/Haptophyta/Chrysochromulina_sp._CCMP291-Ctobinv2/GCA_001275005.1_Ctobinv2_protein.PFam32-A
# per-seq hits tabular output:     /oak/stanford/groups/akundaje/marinovg/genomes/Haptophyta/Chrysochromulina_sp._CCMP291-Ctobinv2/GCA_001275005.1_Ctobinv2_protein.PFam32-A.tblout
# number of worker threads:        20
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query:       KOO20783.1  [L=1707]
Description: protein serine threonine [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
     8e-118  385.1 142.9    6.2e-13   49.1   4.9   12.4 12  VCBS             Repeat domain in Vibrio, Colwellia, Bradyrhi
    4.5e-58  192.9 128.4    4.3e-05   23.5   1.7   13.6 13  FG-GAP           FG-GAP repeat
    3.4e-19   68.3  77.2    6.8e-08   32.2   1.4    9.7  9  Ephrin_rec_like  Putative ephrin-receptor like
    3.6e-09   36.7  35.7         17    5.7   0.0   12.8 13  Dockerin_1       Dockerin type I domain
     0.0015   17.9  62.7        3.2    7.1   0.3   13.0 13  TcdB_toxin_midN  Insecticide toxin TcdB middle/N-terminal reg
  ------ inclusion threshold ------
      0.081   13.3   0.0       0.13   12.6   0.0    1.3  1  RIC3             Resistance to inhibitors of cholinesterase h
        1.4    8.0   5.8         38    3.2   0.0    5.4 11  Glyco_transf_56  4-alpha-L-fucosyltransferase glycosyl transf


Domain annotation for each model (and alignments):
>> VCBS  Repeat domain in Vibrio, Colwellia, Bradyrhizobium and Shewanella
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.7   5.0   3.3e-16   8.4e-13       1      60 [.      40      99 ..      40     100 .. 0.90
   2 !   44.9   5.3   4.9e-15   1.3e-11       1      60 [.      89     148 ..      89     149 .. 0.87
   3 !   47.2   6.5   9.8e-16   2.5e-12       1      60 [.     138     197 ..     138     198 .. 0.91
   4 !   43.9   2.3   1.1e-14   2.7e-11       1      60 [.     187     246 ..     187     247 .. 0.88
   5 !   43.5   3.0   1.4e-14   3.6e-11       1      60 [.     236     295 ..     236     296 .. 0.85
   6 !   46.1   6.2   2.2e-15   5.6e-12       1      60 [.     285     344 ..     285     345 .. 0.88
   7 !   48.1   3.7     5e-16   1.3e-12       1      60 [.     334     393 ..     334     394 .. 0.88
   8 !   45.9   5.0   2.5e-15   6.5e-12       1      60 [.     383     442 ..     383     443 .. 0.89
   9 !   47.4   4.5   8.6e-16   2.2e-12       1      60 [.     432     491 ..     432     492 .. 0.85
  10 !   49.1   4.9   2.4e-16   6.2e-13       1      60 [.     481     540 ..     481     541 .. 0.85
  11 !   47.7   5.8   6.9e-16   1.8e-12       1      60 [.     530     589 ..     530     590 .. 0.88
  12 !   46.0   3.8   2.3e-15   5.9e-12       1      60 [.     579     638 ..     579     639 .. 0.89

  Alignments for each domain:
  == domain 1  score: 48.7 bits;  conditional E-value: 3.3e-16
        VCBS  1 DldgDGrlDlvvan.dgglrvyrnngdGtftdvtktslggsgggt.gvavgDlDgDGdlDll 60
                D+dgDG+lD++++n  ++ rv++n gdGtf  +t+++l+g+ ++t ++a++D+DgDGdlD+l
  KOO20783.1 40 DVDGDGDLDVLLGNqGSPSRVLLNAGDGTF--PTSITLPGGSAITnSIAAADVDGDGDLDVL 99
                9************96688*******99987..788888887777768*************98 PP

  == domain 2  score: 44.9 bits;  conditional E-value: 4.9e-15
        VCBS   1 DldgDGrlDlvvan.dgglrvyrnngdGtftdvtktslgg.sgggtgvavgDlDgDGdlDll 60 
                 D+dgDG+lD++++n  ++ rv++n g Gtf  +t+++l+g     t++a++D+DgDGdlD+l
  KOO20783.1  89 DVDGDGDLDVLLGNyGSPSRVLLNAGGGTF--PTSIELPGdIAETTSIAAADVDGDGDLDVL 148
                 9*************5588*******88876..789988885666669*************98 PP

  == domain 3  score: 47.2 bits;  conditional E-value: 9.8e-16
        VCBS   1 DldgDGrlDlvvan.dgglrvyrnngdGtftdvtktslggsgggt.gvavgDlDgDGdlDll 60 
                 D+dgDG+lD++++n  ++ +v++n gdGtf  +t+++l+ ++++t ++a++D+DgDGdlD+l
  KOO20783.1 138 DVDGDGDLDVLLGNsGSPSQVLLNAGDGTF--PTSIDLPVGNAYTySIAAADVDGDGDLDVL 197
                 9************96688*******99986..899999997777779*************98 PP

  == domain 4  score: 43.9 bits;  conditional E-value: 1.1e-14
        VCBS   1 DldgDGrlDlvvan.dgglrvyrnngdGtftdvtktslgg.sgggtgvavgDlDgDGdlDll 60 
                 D+dgDG+lD++++n +++ +v++n g Gtf  +t+++l+g s + t++a++D+Dg GdlD+l
  KOO20783.1 187 DVDGDGDLDVLLGNfQSPSQVLLNAGGGTF--PTSIELPGgSAQTTSIAAADVDGEGDLDVL 246
                 9*************8899*******88876..788988884556669*************98 PP

  == domain 5  score: 43.5 bits;  conditional E-value: 1.4e-14
        VCBS   1 DldgDGrlDlvvan.dgglrvyrnngdGtftdvtktslgg.sgggtgvavgDlDgDGdlDll 60 
                 D+dg G+lD++++n  ++ +v++n g Gtf  +t+++l+g +   +++a++D+DgDGdlD+l
  KOO20783.1 236 DVDGEGDLDVLLGNyGSPSQVLLNAGGGTF--PTSITLPGgNAETRSIAAADVDGDGDLDVL 295
                 9*************5578******988876..778877772555559*************98 PP

  == domain 6  score: 46.1 bits;  conditional E-value: 2.2e-15
        VCBS   1 DldgDGrlDlvvan.dgglrvyrnngdGtftdvtktslggsgggt.gvavgDlDgDGdlDll 60 
                 D+dgDG+lD++++n  ++ +v++n g Gtf  +t+++l+g++++t ++a++D+DgDGdlD+l
  KOO20783.1 285 DVDGDGDLDVLLGNyGSPSQVLLNAGGGTF--PTSIDLPGGNASTaSIAAADVDGDGDLDVL 344
                 9*************5577******988875..899999997777758*************98 PP

  == domain 7  score: 48.1 bits;  conditional E-value: 5e-16
        VCBS   1 DldgDGrlDlvvan.dgglrvyrnngdGtftdvtktslggsgggt.gvavgDlDgDGdlDll 60 
                 D+dgDG+lD++++n  ++ +v++n g Gtf  +t+++l+g+ ++t ++a++D+DgDGdlD+l
  KOO20783.1 334 DVDGDGDLDVLLGNsGSPSQVLLNAGGGTF--PTSIELPGGSAQTsSIAAADVDGDGDLDVL 393
                 9************95688******988876..899999996666648*************98 PP

  == domain 8  score: 45.9 bits;  conditional E-value: 2.5e-15
        VCBS   1 DldgDGrlDlvvan.dgglrvyrnngdGtftdvtktslgg.sgggtgvavgDlDgDGdlDll 60 
                 D+dgDG+lD++++n  ++ +v++n g Gtf  +t+++l+g s + t++a++D+DgDGdlD+l
  KOO20783.1 383 DVDGDGDLDVLLGNlHSPSQVLLNAGGGTF--PTSIDLPGgSAQTTSIAAADVDGDGDLDVL 442
                 9*************99*********98876..788888884666669*************98 PP

  == domain 9  score: 47.4 bits;  conditional E-value: 8.6e-16
        VCBS   1 DldgDGrlDlvvan.dgglrvyrnngdGtftdvtktslgg.sgggtgvavgDlDgDGdlDll 60 
                 D+dgDG+lD++++n  ++ +v++n g Gtf  +t+++l+g +   +++a++D+DgDGdlD+l
  KOO20783.1 432 DVDGDGDLDVLLGNyGSPSQVLLNAGGGTF--PTSITLPGgNAETRSIAAADVDGDGDLDVL 491
                 9*************5578******988876..778877772555559*************98 PP

  == domain 10  score: 49.1 bits;  conditional E-value: 2.4e-16
        VCBS   1 DldgDGrlDlvvan.dgglrvyrnngdGtftdvtktslggsgggtgvavgDlDgDGdlDll 60 
                 D+dgDG+lD++++n  ++ +v++n g+Gtf   ++t  gg    +++a++D+DgDGdlD+l
  KOO20783.1 481 DVDGDGDLDVLLGNyGSPSQVLLNAGNGTFPT-STTLPGGIAETWSIAAADVDGDGDLDVL 540
                 9*************5588*********99843.334555577888**************98 PP

  == domain 11  score: 47.7 bits;  conditional E-value: 6.9e-16
        VCBS   1 DldgDGrlDlvvan.dgglrvyrnngdGtftdvtktslgg.sgggtgvavgDlDgDGdlDll 60 
                 D+dgDG+lD++++n +++ +v++n gdGtf  +t+++l+g s   t+++++D+DgDGdlD+l
  KOO20783.1 530 DVDGDGDLDVLLGNsYSPSQVLLNAGDGTF--PTSIDLPGgSASTTSIVAADVDGDGDLDVL 589
                 9************989*********99987..788888883555569*************98 PP

  == domain 12  score: 46.0 bits;  conditional E-value: 2.3e-15
        VCBS   1 DldgDGrlDlvvan.dgglrvyrnngdGtftdvtktslggsgggt.gvavgDlDgDGdlDll 60 
                 D+dgDG+lD++++n  ++ rv++n g    t++t+++l+g++ +t ++a++D+DgDGdlD+l
  KOO20783.1 579 DVDGDGDLDVLLGNyGSRSRVLLNAGGS--TFPTSIALPGGNVPTtSIAAADVDGDGDLDVL 638
                 9*************5688******9765..56899999998888868*************98 PP

>> FG-GAP  FG-GAP repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.5   1.7   1.7e-08   4.3e-05       3      29 ..      34      56 ..      33      62 .. 0.89
   2 !   20.0   4.3   2.2e-07   0.00056       3      29 ..      83     105 ..      81     116 .. 0.86
   3 !   20.7   3.1   1.3e-07   0.00033       3      27 ..     132     152 ..     131     163 .. 0.83
   4 !   22.1   2.5   4.8e-08   0.00012       2      23 ..     180     203 ..     179     215 .. 0.80
   5 !   10.4   2.6   0.00021      0.54       3      29 ..     230     252 ..     229     263 .. 0.86
   6 !   19.8   3.7   2.5e-07   0.00063       3      29 ..     279     301 ..     278     312 .. 0.86
   7 !   19.4   4.2   3.2e-07   0.00083       3      23 ..     328     348 ..     326     362 .. 0.80
   8 !   20.5   2.3   1.5e-07   0.00038       3      23 ..     377     400 ..     376     412 .. 0.79
   9 !   20.2   4.5   1.9e-07   0.00048       3      29 ..     426     448 ..     425     459 .. 0.86
  10 !   21.7   1.7   6.5e-08   0.00017       3      29 ..     475     497 ..     474     504 .. 0.87
  11 !   22.9   2.1   2.7e-08   6.9e-05       3      26 ..     524     546 ..     523     555 .. 0.85
  12 !   20.7   1.8   1.3e-07   0.00034       3      29 ..     573     595 ..     571     602 .. 0.89
  13 !   22.8   1.6   2.9e-08   7.5e-05       3      29 ..     622     644 ..     620     647 .. 0.89

  Alignments for each domain:
  == domain 1  score: 23.5 bits;  conditional E-value: 1.7e-08
                SSEEEESTSSSSS-EEEEEETT-ETCS CS
      FG-GAP  3 yslavgDvNGDGyaDLavGApeskgga 29
                ys+a++Dv+GDG  D+++G    ++g+
  KOO20783.1 34 YSIAAADVDGDGDLDVLLG----NQGS 56
                9******************....7776 PP

  == domain 2  score: 20.0 bits;  conditional E-value: 2.2e-07
                 SSEEEESTSSSSS-EEEEEETT-ETCS CS
      FG-GAP   3 yslavgDvNGDGyaDLavGApeskgga 29 
                 +s+a++Dv+GDG  D+++G    ++g+
  KOO20783.1  83 NSIAAADVDGDGDLDVLLG----NYGS 105
                 79*****************....6665 PP

  == domain 3  score: 20.7 bits;  conditional E-value: 1.3e-07
                 SSEEEESTSSSSS-EEEEEETT-ET CS
      FG-GAP   3 yslavgDvNGDGyaDLavGApeskg 27 
                 +s+a++Dv+GDG  D+++G      
  KOO20783.1 132 TSIAAADVDGDGDLDVLLGN----S 152
                 89*****************4....2 PP

  == domain 4  score: 22.1 bits;  conditional E-value: 4.8e-08
                 TSSEEEESTSSSSS-EEEEEE..T CS
      FG-GAP   2 GyslavgDvNGDGyaDLavGA..p 23 
                  ys+a++Dv+GDG  D+++G   +
  KOO20783.1 180 TYSIAAADVDGDGDLDVLLGNfqS 203
                 69******************6441 PP

  == domain 5  score: 10.4 bits;  conditional E-value: 0.00021
                 SSEEEESTSSSSS-EEEEEETT-ETCS CS
      FG-GAP   3 yslavgDvNGDGyaDLavGApeskgga 29 
                 +s+a++Dv+G G  D+++G    ++g+
  KOO20783.1 230 TSIAAADVDGEGDLDVLLG----NYGS 252
                 89*****************....6665 PP

  == domain 6  score: 19.8 bits;  conditional E-value: 2.5e-07
                 SSEEEESTSSSSS-EEEEEETT-ETCS CS
      FG-GAP   3 yslavgDvNGDGyaDLavGApeskgga 29 
                  s+a++Dv+GDG  D+++G    ++g+
  KOO20783.1 279 RSIAAADVDGDGDLDVLLG----NYGS 301
                 599****************....6665 PP

  == domain 7  score: 19.4 bits;  conditional E-value: 3.2e-07
                 SSEEEESTSSSSS-EEEEEET CS
      FG-GAP   3 yslavgDvNGDGyaDLavGAp 23 
                 +s+a++Dv+GDG  D+++G +
  KOO20783.1 328 ASIAAADVDGDGDLDVLLGNS 348
                 79*****************52 PP

  == domain 8  score: 20.5 bits;  conditional E-value: 1.5e-07
                 SSEEEESTSSSSS-EEEEEE...T CS
      FG-GAP   3 yslavgDvNGDGyaDLavGA...p 23 
                 +s+a++Dv+GDG  D+++G    p
  KOO20783.1 377 SSIAAADVDGDGDLDVLLGNlhsP 400
                 89*****************66532 PP

  == domain 9  score: 20.2 bits;  conditional E-value: 1.9e-07
                 SSEEEESTSSSSS-EEEEEETT-ETCS CS
      FG-GAP   3 yslavgDvNGDGyaDLavGApeskgga 29 
                 +s+a++Dv+GDG  D+++G    ++g+
  KOO20783.1 426 TSIAAADVDGDGDLDVLLG----NYGS 448
                 89*****************....6665 PP

  == domain 10  score: 21.7 bits;  conditional E-value: 6.5e-08
                 SSEEEESTSSSSS-EEEEEETT-ETCS CS
      FG-GAP   3 yslavgDvNGDGyaDLavGApeskgga 29 
                  s+a++Dv+GDG  D+++G    ++g+
  KOO20783.1 475 RSIAAADVDGDGDLDVLLG----NYGS 497
                 599****************....7775 PP

  == domain 11  score: 22.9 bits;  conditional E-value: 2.7e-08
                 SSEEEESTSSSSS-EEEEEETT-E CS
      FG-GAP   3 yslavgDvNGDGyaDLavGApesk 26 
                 +s+a++Dv+GDG  D+++G ++ +
  KOO20783.1 524 WSIAAADVDGDGDLDVLLGNSY-S 546
                 9******************544.3 PP

  == domain 12  score: 20.7 bits;  conditional E-value: 1.3e-07
                 SSEEEESTSSSSS-EEEEEETT-ETCS CS
      FG-GAP   3 yslavgDvNGDGyaDLavGApeskgga 29 
                 +s+ ++Dv+GDG  D+++G    ++g+
  KOO20783.1 573 TSIVAADVDGDGDLDVLLG----NYGS 595
                 899****************....7775 PP

  == domain 13  score: 22.8 bits;  conditional E-value: 2.9e-08
                 SSEEEESTSSSSS-EEEEEETT-ETCS CS
      FG-GAP   3 yslavgDvNGDGyaDLavGApeskgga 29 
                 +s+a++Dv+GDG  D+++G    ++g+
  KOO20783.1 622 TSIAAADVDGDGDLDVLLG----NQGS 644
                 89*****************....7765 PP

>> Ephrin_rec_like  Putative ephrin-receptor like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.1   1.4      0.28   7.1e+02       9      31 ..     666     688 ..     658     699 .. 0.77
   2 !    5.8   2.4    0.0045        12       9      41 ..     699     730 ..     692     732 .. 0.83
   3 !    9.9   9.5   0.00023      0.59      10      34 ..     732     756 ..     727     769 .. 0.81
   4 ?    1.5   0.9     0.098   2.5e+02       7      18 ..     788     799 ..     783     816 .. 0.75
   5 !   12.6   3.3   3.4e-05     0.086       8      33 ..     805     830 ..     798     831 .. 0.80
   6 !   18.5   7.5     5e-07    0.0013       1      34 [.     814     848 ..     814     850 .. 0.92
   7 !    9.0   1.1   0.00045       1.2       1      24 [.     848     871 ..     848     879 .. 0.92
   8 !   27.9   3.6   5.7e-10   1.5e-06      13      48 .]    1084    1122 ..    1078    1122 .. 0.96
   9 !   32.2   1.4   2.7e-11   6.8e-08       9      48 .]    1152    1201 ..    1149    1201 .. 0.95

  Alignments for each domain:
  == domain 1  score: 0.1 bits;  conditional E-value: 0.28
  Ephrin_rec_like   9 etCipCprgtYqneegqlsClaC 31 
                      + C  Cp  + +   g+  C +C
       KOO20783.1 666 NGCVRCPAPSSRRDDGFDVCYEC 688
                      45888888888888888888888 PP

  == domain 2  score: 5.8 bits;  conditional E-value: 0.0045
  Ephrin_rec_like   9 etCipCprgtYqneegqlsClaCPlgtttkkpg 41 
                        C +C  g+     g + C++CP+g++   +g
       KOO20783.1 699 GACAACTEGS-ERVLGATRCTRCPAGKRHAATG 730
                      5799999999.7799*********998876665 PP

  == domain 3  score: 9.9 bits;  conditional E-value: 0.00023
  Ephrin_rec_like  10 tCipCprgtYqneegqlsClaCPlg 34 
                       CipC+ g + +++g+++C++C +g
       KOO20783.1 732 GCIPCSPGKFTSTSGSTACQPCTQG 756
                      4*********************754 PP

  == domain 4  score: 1.5 bits;  conditional E-value: 0.098
  Ephrin_rec_like   7 gletCipCprgt 18 
                      +l++C  Cp gt
       KOO20783.1 788 SLSECVVCPVGT 799
                      457788888887 PP

  == domain 5  score: 12.6 bits;  conditional E-value: 3.4e-05
  Ephrin_rec_like   8 letCipCprgtYqneegqlsClaCPl 33 
                      ++   pC  gtY+n+ +q +Cl+C +
       KOO20783.1 805 SAVAVPCAPGTYNNQPRQETCLKCAP 830
                      555579******************76 PP

  == domain 6  score: 18.5 bits;  conditional E-value: 5e-07
  Ephrin_rec_like   1 Gtysn.tgletCipCprgtYqneegqlsClaCPlg 34 
                      Gty n   +etC  C  g++q+ +g++sC++C +g
       KOO20783.1 814 GTYNNqPRQETCLKCAPGSFQELAGRTSCNPCTPG 848
                      89999789************************876 PP

  == domain 7  score: 9.0 bits;  conditional E-value: 0.00045
  Ephrin_rec_like   1 GtysntgletCipCprgtYqneeg 24 
                      G+y  +g++t  pCprg Y+n+ g
       KOO20783.1 848 GYYCAEGAATPVPCPRGKYNNRTG 871
                      9*******************9876 PP

  == domain 8  score: 27.9 bits;  conditional E-value: 5.7e-10
  Ephrin_rec_like   13 pCprgtYqn...eegqlsClaCPlgtttkkpgatsesdC 48  
                       +C+ g+Y++    ++q++Cl+CP+  tt  ++at++s+C
       KOO20783.1 1084 ACEQGFYNPttnAASQTACLRCPDRSTTNGTAATNVSEC 1122
                       7********99999************************* PP

  == domain 9  score: 32.2 bits;  conditional E-value: 2.7e-11
  Ephrin_rec_like    9 etCipCprgtYqn.........eegqlsClaCP.lgtttkkpgatsesdC 48  
                       ++C pC++gtY++           g ++Cl CP ++ttt ++ga s+s+C
       KOO20783.1 1152 VQCAPCKIGTYKDwtgenllrnPLGPQKCLDCPvPQTTTVHEGADSVSQC 1201
                       68**************99999999************************** PP

>> Dockerin_1  Dockerin type I domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.0   0.1     0.022        56      27      46 ..      29      48 ..      23      50 .. 0.77
   2 ?    4.1   0.1      0.02        52      28      46 ..      79      97 ..      62      99 .. 0.83
   3 ?    4.1   0.1     0.021        53      29      46 ..     129     146 ..     111     148 .. 0.84
   4 ?    2.9   0.2     0.048   1.2e+02      32      46 ..     181     195 ..     171     197 .. 0.80
   5 ?    0.7   0.0      0.24   6.2e+02      26      45 ..     224     243 ..     209     246 .. 0.84
   6 ?    4.1   0.0     0.021        53      27      46 ..     274     293 ..     257     295 .. 0.82
   7 ?    5.0   0.1     0.011        29      26      46 ..     322     342 ..     306     344 .. 0.84
   8 !    5.7   0.0    0.0067        17      26      46 ..     371     391 ..     355     393 .. 0.85
   9 !    5.2   0.1    0.0097        25      26      46 ..     420     440 ..     404     442 .. 0.84
  10 ?    4.1   0.0     0.021        53      27      46 ..     470     489 ..     453     491 .. 0.82
  11 ?    2.4   0.0     0.069   1.8e+02      34      46 ..     526     538 ..     516     540 .. 0.81
  12 ?    3.4   0.1     0.034        86      27      46 ..     568     587 ..     550     589 .. 0.82
  13 ?    4.8   0.0     0.013        33      27      46 ..     617     636 ..     600     638 .. 0.84

  Alignments for each domain:
  == domain 1  score: 4.0 bits;  conditional E-value: 0.022
                BTTSCCCHGGGSTT-SSCES CS
  Dockerin_1 27 gqssssngkaaDvNgDGrvn 46
                +  ++   +aaDv+gDG  +
  KOO20783.1 29 ELVDTYSIAAADVDGDGDLD 48
                556778889********865 PP

  == domain 2  score: 4.1 bits;  conditional E-value: 0.02
                TTSCCCHGGGSTT-SSCES CS
  Dockerin_1 28 qssssngkaaDvNgDGrvn 46
                +  ++  +aaDv+gDG  +
  KOO20783.1 79 SAITNSIAAADVDGDGDLD 97
                56678899********865 PP

  == domain 3  score: 4.1 bits;  conditional E-value: 0.021
                 TSCCCHGGGSTT-SSCES CS
  Dockerin_1  29 ssssngkaaDvNgDGrvn 46 
                   ++  +aaDv+gDG  +
  KOO20783.1 129 AETTSIAAADVDGDGDLD 146
                 5677889********865 PP

  == domain 4  score: 2.9 bits;  conditional E-value: 0.048
                 CCHGGGSTT-SSCES CS
  Dockerin_1  32 sngkaaDvNgDGrvn 46 
                    +aaDv+gDG  +
  KOO20783.1 181 YSIAAADVDGDGDLD 195
                 56789******9765 PP

  == domain 5  score: 0.7 bits;  conditional E-value: 0.24
                 EBTTSCCCHGGGSTT-SSCE CS
  Dockerin_1  26 egqssssngkaaDvNgDGrv 45 
                 +g+ +++  +aaDv+g G  
  KOO20783.1 224 GGSAQTTSIAAADVDGEGDL 243
                 567788999*******9976 PP

  == domain 6  score: 4.1 bits;  conditional E-value: 0.021
                 BTTSCCCHGGGSTT-SSCES CS
  Dockerin_1  27 gqssssngkaaDvNgDGrvn 46 
                 g+  +   +aaDv+gDG  +
  KOO20783.1 274 GNAETRSIAAADVDGDGDLD 293
                 566777889********865 PP

  == domain 7  score: 5.0 bits;  conditional E-value: 0.011
                 EBTTSCCCHGGGSTT-SSCES CS
  Dockerin_1  26 egqssssngkaaDvNgDGrvn 46 
                 +g+ s+   +aaDv+gDG  +
  KOO20783.1 322 GGNASTASIAAADVDGDGDLD 342
                 5677889999********865 PP

  == domain 8  score: 5.7 bits;  conditional E-value: 0.0067
                 EBTTSCCCHGGGSTT-SSCES CS
  Dockerin_1  26 egqssssngkaaDvNgDGrvn 46 
                 +g+ ++s  +aaDv+gDG  +
  KOO20783.1 371 GGSAQTSSIAAADVDGDGDLD 391
                 567889999*********865 PP

  == domain 9  score: 5.2 bits;  conditional E-value: 0.0097
                 EBTTSCCCHGGGSTT-SSCES CS
  Dockerin_1  26 egqssssngkaaDvNgDGrvn 46 
                 +g+ +++  +aaDv+gDG  +
  KOO20783.1 420 GGSAQTTSIAAADVDGDGDLD 440
                 567788999*********865 PP

  == domain 10  score: 4.1 bits;  conditional E-value: 0.021
                 BTTSCCCHGGGSTT-SSCES CS
  Dockerin_1  27 gqssssngkaaDvNgDGrvn 46 
                 g+  +   +aaDv+gDG  +
  KOO20783.1 470 GNAETRSIAAADVDGDGDLD 489
                 566777889********865 PP

  == domain 11  score: 2.4 bits;  conditional E-value: 0.069
                 HGGGSTT-SSCES CS
  Dockerin_1  34 gkaaDvNgDGrvn 46 
                  +aaDv+gDG  +
  KOO20783.1 526 IAAADVDGDGDLD 538
                 57999*9999765 PP

  == domain 12  score: 3.4 bits;  conditional E-value: 0.034
                 BTTSCCCHGGGSTT-SSCES CS
  Dockerin_1  27 gqssssngkaaDvNgDGrvn 46 
                 g+ s++   aaDv+gDG  +
  KOO20783.1 568 GSASTTSIVAADVDGDGDLD 587
                 6677888899******9765 PP

  == domain 13  score: 4.8 bits;  conditional E-value: 0.013
                 BTTSCCCHGGGSTT-SSCES CS
  Dockerin_1  27 gqssssngkaaDvNgDGrvn 46 
                 g+  ++  +aaDv+gDG  +
  KOO20783.1 617 GNVPTTSIAAADVDGDGDLD 636
                 667788999********865 PP

>> TcdB_toxin_midN  Insecticide toxin TcdB middle/N-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.3   0.3     0.036        93      27      46 ..      32      51 ..       9      60 .. 0.74
   2 ?    3.3   0.3     0.018        45      14      46 ..      69     100 ..      57     109 .. 0.70
   3 !    7.1   0.3    0.0012       3.2      23      52 ..     125     155 ..     112     182 .. 0.68
   4 ?    2.6   0.3      0.03        76      15      46 ..     168     198 ..     155     210 .. 0.74
   5 ?    3.5   0.1     0.016        40      15      46 ..     217     247 ..     209     257 .. 0.80
   6 ?    3.6   0.2     0.014        37      24      46 ..     274     296 ..     259     311 .. 0.73
   7 !    5.1   0.3    0.0051        13      24      51 ..     323     350 ..     303     360 .. 0.77
   8 ?    3.9   0.2     0.012        31      16      46 ..     365     394 ..     357     404 .. 0.75
   9 !    5.4   0.3    0.0041        10      15      46 ..     413     443 ..     400     453 .. 0.80
  10 ?    3.6   0.2     0.015        37      24      46 ..     470     492 ..     455     505 .. 0.72
  11 !    5.5   0.2    0.0039       9.9      21      51 ..     515     546 ..     503     555 .. 0.72
  12 !    5.9   0.3    0.0029       7.5      12      46 ..     557     590 ..     547     601 .. 0.80
  13 !    6.2   0.2    0.0023       5.8      14      46 ..     608     639 ..     598     647 .. 0.82

  Alignments for each domain:
  == domain 1  score: 2.3 bits;  conditional E-value: 0.036
  TcdB_toxin_midN 27 edtnlslaDldGdGladlvl 46
                     +   + +aD+dGdG +d++l
       KOO20783.1 32 DTYSIAAADVDGDGDLDVLL 51
                     4556789**********876 PP

  == domain 2  score: 3.3 bits;  conditional E-value: 0.018
  TcdB_toxin_midN  14 kpetirvgtstsvedtnlslaDldGdGladlvl 46 
                       p++i     + +    + +aD+dGdG +d++l
       KOO20783.1  69 FPTSITLPGGSAI-TNSIAAADVDGDGDLDVLL 100
                      5566555442233.334799**********775 PP

  == domain 3  score: 7.1 bits;  conditional E-value: 0.0012
  TcdB_toxin_midN  23 stsv.edtnlslaDldGdGladlvltipsag 52 
                      ++ + e t + +aD+dGdG +d++l  +++ 
       KOO20783.1 125 PGDIaETTSIAAADVDGDGDLDVLLGNSGSP 155
                      444404567899**********999887765 PP

  == domain 4  score: 2.6 bits;  conditional E-value: 0.03
  TcdB_toxin_midN  15 petirvgtstsvedtnlslaDldGdGladlvl 46 
                      p++i     ++     + +aD+dGdG +d++l
       KOO20783.1 168 PTSIDLPV-GNAYTYSIAAADVDGDGDLDVLL 198
                      55555544.4455556889**********876 PP

  == domain 5  score: 3.5 bits;  conditional E-value: 0.016
  TcdB_toxin_midN  15 petirvgtstsvedtnlslaDldGdGladlvl 46 
                      p++i+    +s + t + +aD+dG+G +d++l
       KOO20783.1 217 PTSIELPG-GSAQTTSIAAADVDGEGDLDVLL 247
                      66666655.7888999*************775 PP

  == domain 6  score: 3.6 bits;  conditional E-value: 0.014
  TcdB_toxin_midN  24 tsvedtnlslaDldGdGladlvl 46 
                      ++ e   + +aD+dGdG +d++l
       KOO20783.1 274 GNAETRSIAAADVDGDGDLDVLL 296
                      3344446789**********775 PP

  == domain 7  score: 5.1 bits;  conditional E-value: 0.0051
  TcdB_toxin_midN  24 tsvedtnlslaDldGdGladlvltipsa 51 
                      ++ +   + +aD+dGdG +d++l  +++
       KOO20783.1 323 GNASTASIAAADVDGDGDLDVLLGNSGS 350
                      5566667899**********99877665 PP

  == domain 8  score: 3.9 bits;  conditional E-value: 0.012
  TcdB_toxin_midN  16 etirvgtstsvedtnlslaDldGdGladlvl 46 
                      ++i+    +s +   + +aD+dGdG +d++l
       KOO20783.1 365 TSIELPG-GSAQTSSIAAADVDGDGDLDVLL 394
                      5555444.5566667899**********886 PP

  == domain 9  score: 5.4 bits;  conditional E-value: 0.0041
  TcdB_toxin_midN  15 petirvgtstsvedtnlslaDldGdGladlvl 46 
                      p++i     +s + t + +aD+dGdG +d++l
       KOO20783.1 413 PTSIDLPG-GSAQTTSIAAADVDGDGDLDVLL 443
                      55555544.77888999************775 PP

  == domain 10  score: 3.6 bits;  conditional E-value: 0.015
  TcdB_toxin_midN  24 tsvedtnlslaDldGdGladlvl 46 
                      ++ e   + +aD+dGdG +d++l
       KOO20783.1 470 GNAETRSIAAADVDGDGDLDVLL 492
                      3344446789**********775 PP

  == domain 11  score: 5.5 bits;  conditional E-value: 0.0039
  TcdB_toxin_midN  21 gtstsvedt.nlslaDldGdGladlvltipsa 51 
                      + ++ +++t  + +aD+dGdG +d++l  +++
       KOO20783.1 515 TLPGGIAETwSIAAADVDGDGDLDVLLGNSYS 546
                      34444444426789**********99988776 PP

  == domain 12  score: 5.9 bits;  conditional E-value: 0.0029
  TcdB_toxin_midN  12 fkkpetirvgtstsvedtnlslaDldGdGladlvl 46 
                       + p++i     +s + t + +aD+dGdG +d++l
       KOO20783.1 557 GTFPTSIDLPG-GSASTTSIVAADVDGDGDLDVLL 590
                      56677777665.8899999*************776 PP

  == domain 13  score: 6.2 bits;  conditional E-value: 0.0023
  TcdB_toxin_midN  14 kpetirvgtstsvedtnlslaDldGdGladlvl 46 
                       p++i     ++v+ t + +aD+dGdG +d++l
       KOO20783.1 608 FPTSIALPG-GNVPTTSIAAADVDGDGDLDVLL 639
                      566666655.88999***************876 PP

>> RIC3  Resistance to inhibitors of cholinesterase homologue 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   5.3e-05      0.13      71     137 ..    1485    1571 ..    1467    1576 .. 0.80

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 5.3e-05
        RIC3   71 lvgtllPlYtiGilvfilYtllKikskkkke................kskeakakkkakenakkkte....teeeLeeLqerLaeTE 137 
                  ++ ++l +Y iG+ +f ++t++    + ++                 k ++a++ +++ e +++++e    + e L++L+++L +T 
  KOO20783.1 1485 YAIIMLVIYPIGVPLFYAFTFFRGRHELQDLrrieltletdfklaklKAEAAATPEETDEMVRRAIEvhqaSGEALRKLRDKLPSTL 1571
                  5667888****************998887768899999999998875444666666666666777667766778*********9995 PP

>> Glyco_transf_56  4-alpha-L-fucosyltransferase glycosyl transferase group 56
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.0      0.97   2.5e+03     176     199 ..      37      60 ..      29      64 .. 0.75
   2 ?   -3.9   0.0       2.1   5.5e+03     179     199 ..      89     109 ..      82     113 .. 0.75
   3 ?    3.2   0.0     0.015        38     165     202 ..     124     161 ..     118     165 .. 0.83
   4 ?   -2.3   0.0      0.72   1.8e+03     172     200 ..     229     257 ..     216     260 .. 0.74
   5 ?   -2.7   0.0      0.96   2.5e+03     174     200 ..     280     306 ..     269     309 .. 0.76
   6 ?    1.6   0.0     0.046   1.2e+02     172     201 ..     327     356 ..     313     359 .. 0.76
   7 ?   -2.2   0.0      0.67   1.7e+03     172     200 ..     425     453 ..     412     456 .. 0.74
   8 ?   -2.5   0.0      0.85   2.2e+03     173     201 ..     475     503 ..     464     506 .. 0.76
   9 ?   -3.2   0.0       1.4   3.5e+03     170     199 ..     521     550 ..     516     554 .. 0.75
  10 ?   -2.2   0.0      0.67   1.7e+03     175     201 ..     575     601 ..     560     604 .. 0.77
  11 ?   -3.9   0.0       2.2   5.6e+03     176     197 ..     625     646 ..     618     647 .. 0.77

  Alignments for each domain:
  == domain 1  score: -2.7 bits;  conditional E-value: 0.97
  Glyco_transf_56 176 aeekeeeeekltillGnsGdrsnr 199
                      a+++ + +++l +llGn G +s  
       KOO20783.1  37 AAADVDGDGDLDVLLGNQGSPSRV 60 
                      5556667889*********99975 PP

  == domain 2  score: -3.9 bits;  conditional E-value: 2.1
  Glyco_transf_56 179 keeeeekltillGnsGdrsnr 199
                      + + +++l +llGn G +s  
       KOO20783.1  89 DVDGDGDLDVLLGNYGSPSRV 109
                      4556789*********99865 PP

  == domain 3  score: 3.2 bits;  conditional E-value: 0.015
  Glyco_transf_56 165 fPtrmdealtlaeekeeeeekltillGnsGdrsnrhia 202
                      +P  ++e++ +a+++ + +++l +llGnsG +s   ++
       KOO20783.1 124 LPGDIAETTSIAAADVDGDGDLDVLLGNSGSPSQVLLN 161
                      57777888888999999999***********9987665 PP

  == domain 4  score: -2.3 bits;  conditional E-value: 0.72
  Glyco_transf_56 172 altlaeekeeeeekltillGnsGdrsnrh 200
                      ++ +a+++ + e++l +llGn G +s   
       KOO20783.1 229 TTSIAAADVDGEGDLDVLLGNYGSPSQVL 257
                      45566667777899*********999765 PP

  == domain 5  score: -2.7 bits;  conditional E-value: 0.96
  Glyco_transf_56 174 tlaeekeeeeekltillGnsGdrsnrh 200
                       +a+++ + +++l +llGn G +s   
       KOO20783.1 280 SIAAADVDGDGDLDVLLGNYGSPSQVL 306
                      556666777899*********999765 PP

  == domain 6  score: 1.6 bits;  conditional E-value: 0.046
  Glyco_transf_56 172 altlaeekeeeeekltillGnsGdrsnrhi 201
                      ++ +a+++ + +++l +llGnsG +s   +
       KOO20783.1 327 TASIAAADVDGDGDLDVLLGNSGSPSQVLL 356
                      55566677778899**********997665 PP

  == domain 7  score: -2.2 bits;  conditional E-value: 0.67
  Glyco_transf_56 172 altlaeekeeeeekltillGnsGdrsnrh 200
                      ++ +a+++ + +++l +llGn G +s   
       KOO20783.1 425 TTSIAAADVDGDGDLDVLLGNYGSPSQVL 453
                      55566667777899*********999765 PP

  == domain 8  score: -2.5 bits;  conditional E-value: 0.85
  Glyco_transf_56 173 ltlaeekeeeeekltillGnsGdrsnrhi 201
                        +a+++ + +++l +llGn G +s   +
       KOO20783.1 475 RSIAAADVDGDGDLDVLLGNYGSPSQVLL 503
                      5556666777899*********9997665 PP

  == domain 9  score: -3.2 bits;  conditional E-value: 1.4
  Glyco_transf_56 170 dealtlaeekeeeeekltillGnsGdrsnr 199
                      +e+  +a+++ + +++l +llGns  +s  
       KOO20783.1 521 AETWSIAAADVDGDGDLDVLLGNSYSPSQV 550
                      5566667777788899********888865 PP

  == domain 10  score: -2.2 bits;  conditional E-value: 0.67
  Glyco_transf_56 175 laeekeeeeekltillGnsGdrsnrhi 201
                      + +++ + +++l +llGn G rs   +
       KOO20783.1 575 IVAADVDGDGDLDVLLGNYGSRSRVLL 601
                      45556667889**********997655 PP

  == domain 11  score: -3.9 bits;  conditional E-value: 2.2
  Glyco_transf_56 176 aeekeeeeekltillGnsGdrs 197
                      a+++ + +++l +llGn G +s
       KOO20783.1 625 AAADVDGDGDLDVLLGNQGSPS 646
                      4555667789*********987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1707 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       643  (0.0358637); expected 358.6 (0.02)
Passed bias filter:                      385  (0.0214736); expected 358.6 (0.02)
Passed Vit filter:                        56  (0.00312343); expected 17.9 (0.001)
Passed Fwd filter:                        16  (0.000892409); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 1.06u 0.30s 00:00:01.36 Elapsed: 00:00:00.53
# Mc/sec: 9640.38
//
Query:       KOO20784.1  [L=55]
Description: hypothetical protein Ctob_000197 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (55 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       303  (0.0169); expected 358.6 (0.02)
Passed bias filter:                      266  (0.0148363); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.27s 00:00:00.58 Elapsed: 00:00:00.40
# Mc/sec: 409.15
//
Query:       KOO20785.1  [L=836]
Description: ankyrin repeat-containing protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    4.1e-24   84.2   1.5    5.2e-11   42.2   0.1    3.4  3  PDZ_6        PDZ domain
    8.1e-24   84.0   0.1    4.9e-12   46.3   0.0    2.6  2  Ank_2        Ankyrin repeats (3 copies)
    5.5e-15   55.5   0.0    1.3e-06   28.7   0.0    2.6  2  PDZ          PDZ domain
    6.9e-14   51.7   0.5    3.9e-08   33.4   0.0    3.3  3  Ank_5        Ankyrin repeats (many copies)
    5.3e-13   49.2   0.1    3.4e-08   33.9   0.0    2.6  2  Ank_4        Ankyrin repeats (many copies)
    6.6e-13   48.8   0.2    2.5e-05   24.5   0.0    2.5  2  PDZ_2        PDZ domain
    3.5e-10   39.8   0.1     0.0032   17.8   0.0    3.5  3  Ank          Ankyrin repeat
    1.1e-09   37.7   0.1     0.0057   17.1   0.0    3.4  3  Ank_3        Ankyrin repeat
    2.1e-08   34.0   0.1     0.0092   15.9   0.0    2.8  2  Tricorn_PDZ  Tricorn protease PDZ domain


Domain annotation for each model (and alignments):
>> PDZ_6  PDZ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.0       3.5   6.9e+03      24      34 ..      44      54 ..      28      56 .. 0.58
   2 !   42.2   0.1   2.6e-14   5.2e-11       1      56 []     344     396 ..     344     396 .. 0.96
   3 !   39.4   0.1   1.9e-13   3.9e-10       1      56 []     675     727 ..     675     727 .. 0.93

  Alignments for each domain:
  == domain 1  score: -3.0 bits;  conditional E-value: 3.5
       PDZ_6 24 svNGqpvegls 34
                +vN + v++++
  KOO20785.1 44 AVNHRGVRQWT 54
                35555555555 PP

  == domain 2  score: 42.2 bits;  conditional E-value: 2.6e-14
       PDZ_6   1 vVtaVdpgsPAdrAG.lrvGDiilsvNGqpveglsladvaallrgsagesvvlvvrr 56 
                 vV+a+ +++PA+r+G lr GD+++s+NG+pv      d++al+   a ++v+l+++r
  KOO20785.1 344 VVKAIGKDTPAMRCGlLREGDRVVSINGEPV--SARSDIRALMT--ASSAVTLEIER 396
                 799****************************..**********6..99999999987 PP

  == domain 3  score: 39.4 bits;  conditional E-value: 1.9e-13
       PDZ_6   1 vVtaVdpgsPAdrAG.lrvGDiilsvNGqpveglsladvaallrgsagesvvlvvrr 56 
                 vV+a+ ++sPA+r G lr GD++++ NG+pv      d+ all+    + v+l+v+r
  KOO20785.1 675 VVQAIGENSPAWRSGqLRTGDRVVAMNGEPV--SPASDLGALLK--HATTVTLEVER 727
                 79*****************************..9999******9..88888888876 PP

>> Ank_2  Ankyrin repeats (3 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.3   0.0   2.4e-15   4.9e-12      24      83 .]      48     115 ..      23     115 .. 0.82
   2 !   44.5   0.1   8.5e-15   1.7e-11       2      73 ..      57     137 ..      56     144 .. 0.83

  Alignments for each domain:
  == domain 1  score: 46.3 bits;  conditional E-value: 2.4e-15
       Ank_2  24 k..ngktaLhyAakngnleivklLleh.ad.....ndgrtpLhyAarsghleivklLlekgadinlkd 83 
                      +t L++Aa +g++e+++lLleh ad     ++g+ +L+ Aa++g   iv+lLle+gad+ +k+
  KOO20785.1  48 RgvRQWTCLFAAATRGHVEVARLLLEHgADpelemEQGWRALMTAAQQGFAPIVQLLLEHGADPGAKN 115
                 14567**********************9555566999**************************99886 PP

  == domain 2  score: 44.5 bits;  conditional E-value: 8.5e-15
       Ank_2   2 hlAakngnlelvklLl.egadpn.k..ngktaLhyAakngnleivklLleh......adndgrtpLhyAarsghleivklLl 73 
                 + Aa  g+ e+ +lLl +gadp+ +  +g+ aL++Aa++g   iv+lLleh       +++g t+L +A   +h +++  Ll
  KOO20785.1  57 FAAATRGHVEVARLLLeHGADPElEmeQGWRALMTAAQQGFAPIVQLLLEHgadpgaKNKNGDTALTLAEAANH-KTALALL 137
                 556668999*******999**998456*************99********99666654499********98899.6666665 PP

>> PDZ  PDZ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.7   0.0   6.3e-10   1.3e-06       2      81 ..     322     394 ..     321     395 .. 0.84
   2 !   24.2   0.0   1.6e-08   3.2e-05       3      66 ..     654     713 ..     652     726 .. 0.81

  Alignments for each domain:
  == domain 1  score: 28.7 bits;  conditional E-value: 6.3e-10
                 EEEETSTTSESSEEEEEETTSSSSSSEEEEEECTTSHHHHHT.SSTTEEEEEETTEETTTSHHHHHHHHHHTTTSEEEEEE CS
         PDZ   2 vslekegrgglGfslkggsdqrgdkgifvsevlpggaaeadg.lkvGDkIlsvNgvdvenvsheeavqaikgskgkvtLti 81 
                 v+l++  +++lG+ l  + d      ++v+ + ++ +a + g l++GD+++s+Ng++v+  s+ +a     +    vtL+i
  KOO20785.1 322 VTLSRTPNESLGLGLGFDGD-----DVVVKAIGKDTPAMRCGlLREGDRVVSINGEPVSARSDIRALMTASS---AVTLEI 394
                 67888899999999999888.....69********99999999****************9988776544444...577777 PP

  == domain 2  score: 24.2 bits;  conditional E-value: 1.6e-08
                 EEETSTTSESSEEEEEETTSSSSSSEEEEEECTTSHHHHHT.SSTTEEEEEETTEETTTSHHHHH CS
         PDZ   3 slekegrgglGfslkggsdqrgdkgifvsevlpggaaeadg.lkvGDkIlsvNgvdvenvsheea 66 
                 +l +  +++lG+ l+ + d      ++v+ + ++++a ++g l+ GD+++++Ng++v+  s++ a
  KOO20785.1 654 TLVRTPNESLGLGLDFDGD-----AVVVQAIGENSPAWRSGqLRTGDRVVAMNGEPVSPASDLGA 713
                 6667789999999999888.....69*******************************98876554 PP

>> Ank_5  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   0.0   2.5e-06     0.005      13      50 ..      51      86 ..      42      89 .. 0.83
   2 !   33.4   0.0     2e-11   3.9e-08      16      56 .]      86     125 ..      82     125 .. 0.93
   3 ?   -3.0   0.0       5.1     1e+04      22      41 ..     642     662 ..     641     666 .. 0.78

  Alignments for each domain:
  == domain 1  score: 17.1 bits;  conditional E-value: 2.5e-06
       Ank_5 13 dgggntpLhvAakygaadvvrlLlargadlnltdsrGl 50
                +++  t+L  Aa +g+ +v+rlLl++gad+ l  ++G+
  KOO20785.1 51 RQW--TCLFAAATRGHVEVARLLLEHGADPELEMEQGW 86
                334..99999**********************999997 PP

  == domain 2  score: 33.4 bits;  conditional E-value: 2e-11
       Ank_5  16 gntpLhvAakygaadvvrlLlargadlnltdsrGltaldlA 56 
                 +  +L++Aa +g a++v+lLl++gad+++++++G+tal lA
  KOO20785.1  86 W-RALMTAAQQGFAPIVQLLLEHGADPGAKNKNGDTALTLA 125
                 3.89**********************************998 PP

  == domain 3  score: -3.0 bits;  conditional E-value: 5.1
       Ank_5  22 vAakygaadvvrlLl.argad 41 
                 +A+ ++a +v+  L+  ++++
  KOO20785.1 642 WAIARNAVRVAVTLVrTPNES 662
                 699999999999998666665 PP

>> Ank_4  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.9   0.0   1.7e-11   3.4e-08       2      55 .]      53     105 ..      52     105 .. 0.93
   2 !   22.0   0.0   9.1e-08   0.00018       3      54 ..      87     137 ..      85     138 .. 0.85

  Alignments for each domain:
  == domain 1  score: 33.9 bits;  conditional E-value: 1.7e-11
       Ank_4   2 ltaLhyaaisgrlelvrlLlekgadinaqdnrsGetalhiAakrgnveilklLl 55 
                 +t+L++aa  g++e++rlLle+gad+     ++G+ al  Aa+ g+  i++lLl
  KOO20785.1  53 WTCLFAAATRGHVEVARLLLEHGADPEL-EMEQGWRALMTAAQQGFAPIVQLLL 105
                 79***********************655.469*********************8 PP

  == domain 2  score: 22.0 bits;  conditional E-value: 9.1e-08
       Ank_4   3 taLhyaaisgrlelvrlLlekgadinaqdnrsGetalhiAakrgnveilklL 54 
                 +aL  aa++g  ++v+lLle+gad+ a  n++G+tal  A   +++ +l lL
  KOO20785.1  87 RALMTAAQQGFAPIVQLLLEHGADPGAK-NKNGDTALTLAEAANHKTALALL 137
                 56777777788889*************9.**********9888888877766 PP

>> PDZ_2  PDZ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.6   0.1     1e-07    0.0002      10      72 ..     339     397 ..     325     407 .. 0.80
   2 !   24.5   0.0   1.3e-08   2.5e-05      11      72 ..     671     728 ..     652     735 .. 0.83

  Alignments for each domain:
  == domain 1  score: 21.6 bits;  conditional E-value: 1e-07
                 ---..-EEEEEE-TTSGGGGT..--TT-EEEEETTB--SSHHHHHHHHHTS-TT-EEEEEEEET CS
       PDZ_2  10 eedtggvlvvsVkeggPaakag.lkagDvilkvdgkkvksledlislllkkkpGdtVkltvlRd 72 
                 + d   v+v  + +++Pa + g l+ gD++++++g +v+ ++d++ l+ +    + V+l+++R 
  KOO20785.1 339 DGD--DVVVKAIGKDTPAMRCGlLREGDRVVSINGEPVSARSDIRALMTAS---SAVTLEIERA 397
                 444..688999***********99**************9999999887755...5688888885 PP

  == domain 2  score: 24.5 bits;  conditional E-value: 1.3e-08
                 --..-EEEEEE-TTSGGGGT..--TT-EEEEETTB--SSHHHHHHHHHTS-TT-EEEEEEEET CS
       PDZ_2  11 edtggvlvvsVkeggPaakag.lkagDvilkvdgkkvksledlislllkkkpGdtVkltvlRd 72 
                  d   v+v+ + e++Pa ++g l++gD++++ +g +v+  +dl  ll ++   +tV+l+v+R 
  KOO20785.1 671 GD--AVVVQAIGENSPAWRSGqLRTGDRVVAMNGEPVSPASDLGALLKHA---TTVTLEVERA 728
                 33..677888***************************9999998888765...7999999996 PP

>> Ank  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.8   0.0   1.6e-06    0.0032       3      27 ..      53      78 ..      51      81 .. 0.93
   2 !   16.6   0.0     4e-06    0.0079       2      31 ..      85     115 ..      84     116 .. 0.90
   3 ?    0.9   0.1      0.37   7.3e+02       1      10 [.     117     126 ..     117     145 .. 0.68

  Alignments for each domain:
  == domain 1  score: 17.8 bits;  conditional E-value: 1.6e-06
                BBHHHHHHHHTTHHHHHHHH.TTTST CS
         Ank  3 nTPLHlAatngkkriiklLL.hGAnl 27
                +T+L  Aat+g++++++lLL hGA++
  KOO20785.1 53 WTCLFAAATRGHVEVARLLLeHGADP 78
                799**********************8 PP

  == domain 2  score: 16.6 bits;  conditional E-value: 4e-06
                 SBBHHHHHHHHTTHHHHHHHH.TTTSTTCBT CS
         Ank   2 GnTPLHlAatngkkriiklLL.hGAnlnald 31 
                 G+ +L+ Aa+ g + i++lLL hGA++ a++
  KOO20785.1  85 GWRALMTAAQQGFAPIVQLLLeHGADPGAKN 115
                 5669*****989999************9998 PP

  == domain 3  score: 0.9 bits;  conditional E-value: 0.37
                 TSBBHHHHHH CS
         Ank   1 dGnTPLHlAa 10 
                 +G+T+L lA 
  KOO20785.1 117 NGDTALTLAE 126
                 7******963 PP

>> Ank_3  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.0   3.9e-06    0.0077       2      29 ..      52      78 ..      51      80 .. 0.94
   2 !   17.1   0.0   2.9e-06    0.0057       2      29 ..      85     111 ..      84     113 .. 0.94
   3 ?   -1.3   0.0       2.7   5.4e+03       1      23 [.     117     138 ..     117     144 .. 0.73

  Alignments for each domain:
  == domain 1  score: 16.7 bits;  conditional E-value: 3.9e-06
       Ank_3  2 GetpLhlAarsgnleivkfLlenkgadv 29
                ++t L+ Aa  g++e++++Lle +gad+
  KOO20785.1 52 QWTCLFAAATRGHVEVARLLLE-HGADP 78
                69********************.9***8 PP

  == domain 2  score: 17.1 bits;  conditional E-value: 2.9e-06
       Ank_3   2 GetpLhlAarsgnleivkfLlenkgadv 29 
                 G+ +L++Aa +g  +iv++Lle +gad+
  KOO20785.1  85 GWRALMTAAQQGFAPIVQLLLE-HGADP 111
                 899*******************.9***8 PP

  == domain 3  score: -1.3 bits;  conditional E-value: 2.7
       Ank_3   1 nGetpLhlAarsgnleivkfLle 23 
                 nG t+L lA  +++ + + +Ll+
  KOO20785.1 117 NGDTALTLAEAANHKT-ALALLR 138
                 6889998887777777.888887 PP

>> Tricorn_PDZ  Tricorn protease PDZ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.0   4.6e-06    0.0092      32      79 ..     353     397 ..     347     404 .. 0.81
   2 !   14.8   0.0     1e-05     0.021      30      80 ..     682     729 ..     676     735 .. 0.82

  Alignments for each domain:
  == domain 1  score: 15.9 bits;  conditional E-value: 4.6e-06
                  GGGGGS---.TT-EEEEETTEE-BTTB-HHHHHHTTTTSEEEEEEE-S CS
  Tricorn_PDZ  32 PLaepGvnvreGdlilavdgepvskekgiaelLvgkagkeveLtvkrk 79 
                  P ++ G+  reGd +++++gepvs++++i  l++    ++v+L+++r+
   KOO20785.1 353 PAMRCGLL-REGDRVVSINGEPVSARSDIRALMTAS--SAVTLEIERA 397
                  55666776.9********************999755..5588888775 PP

  == domain 2  score: 14.8 bits;  conditional E-value: 1e-05
                  B-GGGGGS---.TT-EEEEETTEE-BTTB-HHHHHHTTTTSEEEEEEE-ST CS
  Tricorn_PDZ  30 rSPLaepGvnvreGdlilavdgepvskekgiaelLvgkagkeveLtvkrkd 80 
                  +SP  ++G ++r+Gd ++a +gepvs+ +++  lL  ++   v+L+v+r+ 
   KOO20785.1 682 NSPAWRSG-QLRTGDRVVAMNGEPVSPASDLGALLKHATT--VTLEVERAP 729
                  56666666.579**********************977665..999998865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (836 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1379  (0.0769145); expected 358.6 (0.02)
Passed bias filter:                      409  (0.0228122); expected 358.6 (0.02)
Passed Vit filter:                        56  (0.00312343); expected 17.9 (0.001)
Passed Fwd filter:                        17  (0.000948185); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.84u 0.28s 00:00:01.12 Elapsed: 00:00:00.45
# Mc/sec: 5618.84
//
Query:       KOO20786.1  [L=469]
Description: centrin [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    6.6e-19   66.0   0.4      2e-05   23.8   0.0    4.7  4  EF-hand_1     EF hand
    1.4e-17   63.9   0.1    1.1e-09   38.6   0.0    3.2  2  EF-hand_7     EF-hand domain pair
    1.6e-17   63.1   1.0    9.7e-06   25.3   0.0    5.0  5  EF-hand_8     EF-hand domain pair
    2.8e-16   58.0   0.7    0.00028   20.6   0.0    4.6  4  EF-hand_6     EF-hand domain
    7.1e-10   37.9   1.0     0.0079   15.6   0.1    3.8  3  EF-hand_5     EF hand
    1.1e-05   25.7   0.0      0.015   15.6   0.0    3.4  3  EF-hand_9     EF-hand domain
     0.0053   17.1   0.5        1.8    8.9   0.0    3.1  3  SPARC_Ca_bdg  Secreted protein acidic and rich in cysteine Ca
     0.0082   16.0   2.3      0.097   12.5   0.0    2.9  3  Sigma54_CBD   Sigma-54 factor, core binding domain
  ------ inclusion threshold ------
      0.017   15.0   0.3        9.8    6.1   0.0    3.5  3  EF-hand_10    EF hand
        2.5    8.3   5.5       0.44   10.7   0.3    2.4  3  Fib_alpha     Fibrinogen alpha/beta chain family
        4.4    7.7   7.8        1.6    9.1   0.1    3.7  4  Syntaxin_2    Syntaxin-like protein


Domain annotation for each model (and alignments):
>> EF-hand_1  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.8   0.0   1.2e-08     2e-05       2      27 ..     276     301 ..     275     303 .. 0.90
   2 !   18.5   0.0     6e-07   0.00098       3      24 ..     313     334 ..     311     336 .. 0.90
   3 ?    3.6   0.0     0.034        55       4      28 ..     350     374 ..     347     375 .. 0.86
   4 !   14.7   0.0     1e-05     0.017       3      28 ..     385     410 ..     383     411 .. 0.88

  Alignments for each domain:
  == domain 1  score: 23.8 bits;  conditional E-value: 1.2e-08
                 HHHHHHHHTTTSSSEEEHHHHHHHHH CS
   EF-hand_1   2 lkeiFrefDkDgdGkIdfeEfkellk 27 
                 + ++Fre D Dg+G++d++Ef ++l 
  KOO20786.1 276 ISDLFREWDADGNGTVDLQEFTRALI 301
                 6789******************9985 PP

  == domain 2  score: 18.5 bits;  conditional E-value: 6e-07
                 HHHHHHHTTTSSSEEEHHHHHH CS
   EF-hand_1   3 keiFrefDkDgdGkIdfeEfke 24 
                 + +FrefD+Dg+G ++++E+++
  KOO20786.1 313 EALFREFDVDGSGNVEYKEYLR 334
                 679****************875 PP

  == domain 3  score: 3.6 bits;  conditional E-value: 0.034
                 HHHHHHTTTSSSEEEHHHHHHHHHH CS
   EF-hand_1   4 eiFrefDkDgdGkIdfeEfkellkk 28 
                 ++  ++D  g G +d+ +f++ +k 
  KOO20786.1 350 DLLHKLDPTGRGAVDLPDFIKGVKQ 374
                 677899**************99986 PP

  == domain 4  score: 14.7 bits;  conditional E-value: 1e-05
                 HHHHHHHTTTSSSEEEHHHHHHHHHH CS
   EF-hand_1   3 keiFrefDkDgdGkIdfeEfkellkk 28 
                   +F+e D +++G ++f+E+ + +++
  KOO20786.1 385 TMLFNEWDSNKSGLLEFKELNAQMRR 410
                 578*****************998876 PP

>> EF-hand_7  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.6   0.0   6.8e-13   1.1e-09       2      69 ..     274     335 ..     273     337 .. 0.94
   2 !   21.7   0.0   1.2e-07    0.0002       4      70 ..     348     408 ..     345     409 .. 0.88

  Alignments for each domain:
  == domain 1  score: 38.6 bits;  conditional E-value: 6.8e-13
   EF-hand_7   2 eklkeaFkelDtdgdgyldkeellrllrkifqgagegsklsdeelellfkefDtdkdGvisfdEFlkl 69 
                 +++ + F+e D dg+g +d +e+ r+l         g + ++++ e+lf+efD d++G + + E+l++
  KOO20786.1 274 SRISDLFREWDADGNGTVDLQEFTRALI------AVGLPADPKAAEALFREFDVDGSGNVEYKEYLRY 335
                 578899****************999999......9******************************976 PP

  == domain 2  score: 21.7 bits;  conditional E-value: 1.2e-07
   EF-hand_7   4 lkeaFkelDtdgdgyldkeellrllrkifqgagegsklsdeelellfkefDtdkdGvisfdEFlkly 70 
                 +++   +lD  g+g +d  ++ + ++        g + sde l  lf+e+D++k+G + f E+ + +
  KOO20786.1 348 VMDLLHKLDPTGRGAVDLPDFIKGVK------QMGYDASDEDLTMLFNEWDSNKSGLLEFKELNAQM 408
                 56777899************776888......788888999*********************98876 PP

>> EF-hand_8  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.0       1.2   1.9e+03      14      29 ..      89     102 ..      86     103 .. 0.81
   2 !   18.0   0.1   1.2e-06    0.0019       6      48 ..     261     296 ..     261     300 .. 0.85
   3 !   25.3   0.0     6e-09   9.7e-06       8      53 ..     294     337 ..     292     339 .. 0.91
   4 ?    5.4   0.0      0.01        16      24      52 ..     344     372 ..     336     374 .. 0.79
   5 !   14.4   0.2   1.5e-05     0.025      21      53 ..     375     409 ..     370     411 .. 0.83

  Alignments for each domain:
  == domain 1  score: -1.2 bits;  conditional E-value: 1.2
   EF-hand_8  14 lrilglkkglseeevd 29 
                 lr lg++  lse+e++
  KOO20786.1  89 LRDLGIE--LSESELR 102
                 7889***..****986 PP

  == domain 2  score: 18.0 bits;  conditional E-value: 1.2e-06
   EF-hand_8   6 treelrrilrilglkkglseee.vdilfrefDtdgdGkisfeEF 48 
                 +++elr+++        ++++  + +lfre D dg+G++++ EF
  KOO20786.1 261 DVDELREAI--------VNNQSrISDLFREWDADGNGTVDLQEF 296
                 678899966........566666********************* PP

  == domain 3  score: 25.3 bits;  conditional E-value: 6e-09
   EF-hand_8   8 eelrril.rilglkkglseeevdilfrefDtdgdGkisfeEFcvlle 53 
                 +e+ r+l ++ gl+    ++++++lfrefD dg+G + ++E++ +  
  KOO20786.1 294 QEFTRALiAV-GLP--ADPKAAEALFREFDVDGSGNVEYKEYLRYSL 337
                 79*****776.***..**************************98876 PP

  == domain 4  score: 5.4 bits;  conditional E-value: 0.01
   EF-hand_8  24 seeevdilfrefDtdgdGkisfeEFcvll 52 
                 s+  v +l+ ++D  g G++++ +F+  +
  KOO20786.1 344 SAARVMDLLHKLDPTGRGAVDLPDFIKGV 372
                 66667789999**************9765 PP

  == domain 5  score: 14.4 bits;  conditional E-value: 1.5e-05
   EF-hand_8  21 k..glseeevdilfrefDtdgdGkisfeEFcvlle 53 
                 +  + s+e++++lf+e D +++G + f+E  + + 
  KOO20786.1 375 MgyDASDEDLTMLFNEWDSNKSGLLEFKELNAQMR 409
                 35569************************877665 PP

>> EF-hand_6  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.6   0.0   1.7e-07   0.00028       3      27 ..     277     301 ..     275     304 .. 0.88
   2 !   12.1   0.0   8.9e-05      0.15       3      21 ..     313     331 ..     311     338 .. 0.89
   3 ?    3.4   0.0     0.054        88       3      28 ..     349     374 ..     347     380 .. 0.85
   4 !   16.5   0.0   3.5e-06    0.0057       4      28 ..     386     410 ..     383     416 .. 0.88

  Alignments for each domain:
  == domain 1  score: 20.6 bits;  conditional E-value: 1.7e-07
   EF-hand_6   3 reaFklfDkdgdGkidaeElrkalr 27 
                  ++F+++D dg+G++d +E+ +al 
  KOO20786.1 277 SDLFREWDADGNGTVDLQEFTRALI 301
                 589*****************99996 PP

  == domain 2  score: 12.1 bits;  conditional E-value: 8.9e-05
   EF-hand_6   3 reaFklfDkdgdGkidaeE 21 
                 +++F++fD+dg+G + ++E
  KOO20786.1 313 EALFREFDVDGSGNVEYKE 331
                 579************9998 PP

  == domain 3  score: 3.4 bits;  conditional E-value: 0.054
   EF-hand_6   3 reaFklfDkdgdGkidaeElrkalrk 28 
                 +++ +++D +g G +d  +++k  ++
  KOO20786.1 349 MDLLHKLDPTGRGAVDLPDFIKGVKQ 374
                 677889***************99884 PP

  == domain 4  score: 16.5 bits;  conditional E-value: 3.5e-06
   EF-hand_6   4 eaFklfDkdgdGkidaeElrkalrk 28 
                  +F+++D +++G + ++El + +r+
  KOO20786.1 386 MLFNEWDSNKSGLLEFKELNAQMRR 410
                 68*********************95 PP

>> EF-hand_5  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.1   4.9e-06    0.0079       3      23 ..     278     298 ..     276     301 .. 0.88
   2 !   13.0   0.0   3.3e-05     0.054       3      21 ..     314     332 ..     312     337 .. 0.87
   3 !    5.5   0.0    0.0081        13       5      22 ..     388     405 ..     387     408 .. 0.87

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 4.9e-06
                 HHHHHH-SS-SSCE-HHHHHH CS
   EF-hand_5   3 dtFqaiDlNgDGkIskeELkt 23 
                 d+F++ D++g G+++ +E+ +
  KOO20786.1 278 DLFREWDADGNGTVDLQEFTR 298
                 89*****************66 PP

  == domain 2  score: 13.0 bits;  conditional E-value: 3.3e-05
                 HHHHHH-SS-SSCE-HHHH CS
   EF-hand_5   3 dtFqaiDlNgDGkIskeEL 21 
                 ++F+++D++g+G +   E 
  KOO20786.1 314 ALFREFDVDGSGNVEYKEY 332
                 79***********999886 PP

  == domain 3  score: 5.5 bits;  conditional E-value: 0.0081
                 HHHH-SS-SSCE-HHHHH CS
   EF-hand_5   5 FqaiDlNgDGkIskeELk 22 
                 F++ D N++G + + EL 
  KOO20786.1 388 FNEWDSNKSGLLEFKELN 405
                 8888************96 PP

>> EF-hand_9  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.5   0.0     0.014        22      33      61 ..     272     299 ..     262     302 .. 0.87
   2 !   15.6   0.0     9e-06     0.015       1      60 [.     313     370 ..     313     376 .. 0.83
   3 ?   -0.7   0.0       1.1   1.8e+03      31      64 ..     378     410 ..     371     412 .. 0.75

  Alignments for each domain:
  == domain 1  score: 5.5 bits;  conditional E-value: 0.014
   EF-hand_9  33 eeseLeelakelDPdgedasvdldtflrv 61 
                 + s++ +l +e D dg+ ++vdl  f r 
  KOO20786.1 272 NQSRISDLFREWDADGN-GTVDLQEFTRA 299
                 678999***********.********885 PP

  == domain 2  score: 15.6 bits;  conditional E-value: 9e-06
   EF-hand_9   1 etvFevcDtqktGrVpvsrlidy.LravtaqdpeeseLeelakelDPdgedasvdldtflr 60 
                 e++F+ +D++  G+V  ++ + y Lr + +   + +++ +l ++lDP g+ + vdl +f +
  KOO20786.1 313 EALFREFDVDGSGNVEYKEYLRYsLREMLQ--RSAARVMDLLHKLDPTGR-GAVDLPDFIK 370
                 679************998877766666666..44569*************.9****99976 PP

  == domain 3  score: -0.7 bits;  conditional E-value: 1.1
   EF-hand_9  31 dpeeseLeelakelDPdgedasvdldtflrvmre 64 
                 d ++ +L  l +e D +   +++++    + mr+
  KOO20786.1 378 DASDEDLTMLFNEWDSNKS-GLLEFKELNAQMRR 410
                 6778888888999987777.88888887777775 PP

>> SPARC_Ca_bdg  Secreted protein acidic and rich in cysteine Ca binding region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.9   0.0    0.0011       1.8      74     111 ..     260     297 ..     207     299 .. 0.90
   2 ?   -2.3   0.0       3.5   5.6e+03      91     111 ..     313     333 ..     309     335 .. 0.86
   3 ?    5.1   0.1     0.017        28      46      78 ..     374     406 ..     337     411 .. 0.86

  Alignments for each domain:
  == domain 1  score: 8.9 bits;  conditional E-value: 0.0011
  SPARC_Ca_bdg  74 sELaplraplvklehCikpflescDadkdkkislkEwc 111
                   +++++lr+ +v++++ i+ ++++ Dad +++++l+E++
    KOO20786.1 260 QDVDELREAIVNNQSRISDLFREWDADGNGTVDLQEFT 297
                   5788999*****************************97 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 3.5
  SPARC_Ca_bdg  91 kpflescDadkdkkislkEwc 111
                   ++++++ D+d  ++++ kE+ 
    KOO20786.1 313 EALFREFDVDGSGNVEYKEYL 333
                   578999999999999999996 PP

  == domain 3  score: 5.1 bits;  conditional E-value: 0.017
  SPARC_Ca_bdg  46 eknlkeckepvawkFsklDtnsdkvlsksELap 78 
                   +  +++  e ++  F+++D n+ ++l+ +EL++
    KOO20786.1 374 QMGYDASDEDLTMLFNEWDSNKSGLLEFKELNA 406
                   55677778889999****************985 PP

>> Sigma54_CBD  Sigma-54 factor, core binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.1       2.4   3.9e+03      99     143 ..      27      71 ..      16      89 .. 0.64
   2 ?    1.9   0.2      0.11   1.8e+02       5      85 ..     216     296 ..     212     299 .. 0.84
   3 !   12.5   0.0   5.9e-05     0.097      40      86 ..     327     369 ..     304     409 .. 0.76

  Alignments for each domain:
  == domain 1  score: -2.5 bits;  conditional E-value: 2.4
  Sigma54_CBD  99 hlellakkdlkklakklglseeelqealelIkkLnPkPgrefsse 143
                  h+ +++ ++++ l+++ ++  ++   + ++++ L+ + +++++++
   KOO20786.1  27 HVAQMNGNEIRLLRETRRIRTARRPGMAAQLRGLQERTAKQVARD 71 
                  555555555666666666666666666666666666666666533 PP

  == domain 2  score: 1.9 bits;  conditional E-value: 0.11
  Sigma54_CBD   5 laaaeeslqehLleQlallelseeereiaeylienLdedGYle..esleeiaeeleeeeveavlkliqsldPaGvgArdlqEc 85 
                  l +ae+ l+e+L ++la  +   ++   +e l ++L ++G  +  ++++e+ e +  ++ +++  l+++ d  G g+ dlqE+
   KOO20786.1 216 LREAERLLNEKLARDLAH-NQAMQQAVTGERLEKSLFKRGINTkiQDVDELREAI-VNNQSRISDLFREWDADGNGTVDLQEF 296
                  567788899999999975.666778888999999999999988777888888888.7788899999**************996 PP

  == domain 3  score: 12.5 bits;  conditional E-value: 5.9e-05
  Sigma54_CBD  40 LdedGYleesleeiaeeleeeeveavlkliqsldPaGvgArdlqEcL 86 
                  ++ + Yl+ sl e+     ++ + +v+ l+++ldP+G gA dl +++
   KOO20786.1 327 VEYKEYLRYSLREM----LQRSAARVMDLLHKLDPTGRGAVDLPDFI 369
                  33333444444444....455699******************98875 PP

>> EF-hand_10  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.9   0.0      0.26   4.2e+02      25      44 ..     278     297 ..     272     303 .. 0.88
   2 ?    3.6   0.1     0.036        58      19      42 ..     308     331 ..     292     336 .. 0.79
   3 ?    6.1   0.0     0.006       9.8      16      44 ..     377     405 ..     371     410 .. 0.82

  Alignments for each domain:
  == domain 1  score: 0.9 bits;  conditional E-value: 0.26
  EF-hand_10  25 kLFkkcDkSksgrLegeEie 44 
                  LF++ D   +g+ + +E+ 
  KOO20786.1 278 DLFREWDADGNGTVDLQEFT 297
                 79***********9999975 PP

  == domain 2  score: 3.6 bits;  conditional E-value: 0.036
  EF-hand_10  19 ddeYAekLFkkcDkSksgrLegeE 42 
                 d + Ae LF++ D   sg  e +E
  KOO20786.1 308 DPKAAEALFREFDVDGSGNVEYKE 331
                 55679*************999888 PP

  == domain 3  score: 6.1 bits;  conditional E-value: 0.006
  EF-hand_10  16 ievddeYAekLFkkcDkSksgrLegeEie 44 
                  + +de   +LF + D  ksg Le +E++
  KOO20786.1 377 YDASDEDLTMLFNEWDSNKSGLLEFKELN 405
                 5667777789**************99986 PP

>> Fib_alpha  Fibrinogen alpha/beta chain family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.1       1.9   3.1e+03      92     109 ..      23      41 ..       7      92 .. 0.65
   2 ?   -2.5   0.1       3.2   5.2e+03      84     108 ..     160     184 ..     139     192 .. 0.60
   3 ?   10.7   0.3   0.00027      0.44      59     121 ..     217     279 ..     201     286 .. 0.79

  Alignments for each domain:
  == domain 1  score: -1.7 bits;  conditional E-value: 1.9
                 HHHHHHHCCH.HHHHHHHH CS
   Fib_alpha  92 rlketidaqe.snirvLqn 109
                 ++++ + +   ++ir L++
  KOO20786.1  23 QYERHVAQMNgNEIRLLRE 41 
                 3444444444444444444 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 3.2
                 HHHHHCCCHHHHHHHCCHHHHHHHH CS
   Fib_alpha  84 keleeeilrlketidaqesnirvLq 108
                 ++ e e +rl + + ++  +i +L 
  KOO20786.1 160 QQAEAERTRLMHDVESERARIAELE 184
                 3444444444444444444444444 PP

  == domain 3  score: 10.7 bits;  conditional E-value: 0.00027
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH CS
   Fib_alpha  59 keikdslrekqkskkdndnvikksskeleeeilrlketidaqesnirvLqnvlesneqkiqkL 121
                 +e +  l+ek + +  +++++++  +  + e + +k+ i+++++ + +L++ + +n+++i++L
  KOO20786.1 217 REAERLLNEKLARDLAHNQAMQQAVTGERLEKSLFKRGINTKIQDVDELREAIVNNQSRISDL 279
                 5556667777777777777777777666667999**************************999 PP

>> Syntaxin_2  Syntaxin-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.3   0.1      0.84   1.4e+03      70      94 ..       8      32 ..       4      74 .. 0.84
   2 ?    0.0   0.2      0.69   1.1e+03      55      76 ..     215     228 ..     145     250 .. 0.58
   3 ?    9.1   0.1   0.00099       1.6      19      49 ..     251     283 ..     244     295 .. 0.85
   4 ?   -1.7   0.0       2.4   3.9e+03      30      51 ..     418     432 ..     401     437 .. 0.56

  Alignments for each domain:
  == domain 1  score: -0.3 bits;  conditional E-value: 0.84
  Syntaxin_2 70 lqkekLkkdfkealqeFqkiqrqya 94
                l++ek+ + + ++lq++++ + q +
  KOO20786.1  8 LEQEKMLELYGKILQQYERHVAQMN 32
                5788888888888888888776655 PP

  == domain 2  score: 0.0 bits;  conditional E-value: 0.69
  Syntaxin_2  55 klsqldnsssdsqqklqkekLk 76 
                 +l +        +++l  ekL+
  KOO20786.1 215 RLRE--------AERLLNEKLA 228
                 2222........2333333333 PP

  == domain 3  score: 9.1 bits;  conditional E-value: 0.00099
  Syntaxin_2  19 vkq.Lgtk.kdteelreklhelieeinelikkt 49 
                 +k  ++tk +d +elre + +++++i++l+++ 
  KOO20786.1 251 FKRgINTKiQDVDELREAIVNNQSRISDLFREW 283
                 4445899989*******************9986 PP

  == domain 4  score: -1.7 bits;  conditional E-value: 2.4
  Syntaxin_2  30 elreklhelieeinelikktne 51 
                  l +++ +li+       +t++
  KOO20786.1 418 SLTKQAAQLIS-------RTKK 432
                 44445555544.......4444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (469 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1325  (0.0739026); expected 358.6 (0.02)
Passed bias filter:                      488  (0.0272185); expected 358.6 (0.02)
Passed Vit filter:                        51  (0.00284455); expected 17.9 (0.001)
Passed Fwd filter:                        15  (0.000836633); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.61u 0.25s 00:00:00.86 Elapsed: 00:00:00.42
# Mc/sec: 3354.30
//
Query:       KOO20787.1  [L=606]
Description: hypothetical protein Ctob_000180, partial [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
     0.0017   18.2  54.1        2.1    8.2   0.4   11.6 11  SCP1201-deam  SCP1.201-like deaminase


Domain annotation for each model (and alignments):
>> SCP1201-deam  SCP1.201-like deaminase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.6   2.8     0.013   2.4e+02      50      84 ..      99     129 ..      36     135 .. 0.69
   2 !    4.8   0.2    0.0013        23      46      84 ..     144     178 ..     130     186 .. 0.71
   3 !    4.5   0.2    0.0016        29      49      85 ..     196     228 ..     186     235 .. 0.77
   4 !    4.2   0.2    0.0021        37      48      84 ..     244     276 ..     232     281 .. 0.78
   5 !    5.4   0.3   0.00089        16      46      84 ..     291     325 ..     275     330 .. 0.76
   6 !    6.5   0.3    0.0004       7.2      46      85 ..     340     375 ..     326     381 .. 0.84
   7 !    6.2   0.2   0.00048       8.6      46      85 ..     389     424 ..     375     431 .. 0.81
   8 !    3.2   0.1    0.0041        73      48      84 ..     440     472 ..     428     478 .. 0.78
   9 !    8.2   0.4   0.00012       2.1      46      85 ..     487     522 ..     470     528 .. 0.74
  10 !    3.4   0.2    0.0037        66      58      84 ..     535     557 ..     526     565 .. 0.78
  11 !    3.0   0.2    0.0048        86      48      83 ..     574     605 ..     563     606 .] 0.75

  Alignments for each domain:
  == domain 1  score: 1.6 bits;  conditional E-value: 0.013
  SCP1201-deam  50 asrksdllaelgakseyttasHVEgkaAawmreng 84 
                   a+r+ ++     a+     ++H+E  +A+++r+++
    KOO20787.1  99 AARVEQHS----AATAIVPKQHIEVAVAVHVRRHD 129
                   22222233....34446778999999999999986 PP

  == domain 2  score: 4.8 bits;  conditional E-value: 0.0013
  SCP1201-deam  46 rgepasrksdllaelgakseyttasHVEgkaAawmreng 84 
                   r+++ +r+ ++la++     +  ++HVE  +A+++r+++
    KOO20787.1 144 REGAVARVEQHLAGTV----RVPKQHVEVAVAVHVRRRD 178
                   5555566666666666....8889************976 PP

  == domain 3  score: 4.5 bits;  conditional E-value: 0.0016
  SCP1201-deam  49 pasrksdllaelgakseyttasHVEgkaAawmrengi 85 
                   + +r+ ++la+++       ++HVE  +A+++r+++ 
    KOO20787.1 196 AVARVEQHLAGTA----IVPKQHVEVAVAVHVRRRDR 228
                   5556667777777....77799***********9875 PP

  == domain 4  score: 4.2 bits;  conditional E-value: 0.0021
  SCP1201-deam  48 epasrksdllaelgakseyttasHVEgkaAawmreng 84 
                   ++a+r  ++la+++       ++HVE  +A+++r+++
    KOO20787.1 244 GAAARIEQHLAGTA----IVPKQHVEVAVAVHVRRRD 276
                   55566666666666....77899***********976 PP

  == domain 5  score: 5.4 bits;  conditional E-value: 0.00089
  SCP1201-deam  46 rgepasrksdllaelgakseyttasHVEgkaAawmreng 84 
                   r+++a+r+ ++la++     +  ++HVE  +A+++r+++
    KOO20787.1 291 REGAAARVEQHLAGTV----QVPKQHVEVAVAVHVRRRD 325
                   6778888888888888....78899***********976 PP

  == domain 6  score: 6.5 bits;  conditional E-value: 0.0004
  SCP1201-deam  46 rgepasrksdllaelgakseyttasHVEgkaAawmrengi 85 
                   r+++a+r+ ++la+++    +  ++HVE  +A+++r+++ 
    KOO20787.1 340 REGAAARVEQHLAGTA----RVPEQHVEVAVAVHVRRRDR 375
                   6778889999999999....8899************9875 PP

  == domain 7  score: 6.2 bits;  conditional E-value: 0.00048
  SCP1201-deam  46 rgepasrksdllaelgakseyttasHVEgkaAawmrengi 85 
                   r+++a+r+ ++la+++       ++HVE  +A+++r+++ 
    KOO20787.1 389 REGAAARVEQHLAGTA----IVPKQHVEVAVAVHVRRRDR 424
                   6778889999999999....8889************9875 PP

  == domain 8  score: 3.2 bits;  conditional E-value: 0.0041
  SCP1201-deam  48 epasrksdllaelgakseyttasHVEgkaAawmreng 84 
                   ++a+r  ++la+++       ++HVE   A+++r+++
    KOO20787.1 440 GAAARIEQHLAGTA----IVPKQHVEVAFAVHVRRRD 472
                   55566666666666....77899***********976 PP

  == domain 9  score: 8.2 bits;  conditional E-value: 0.00012
  SCP1201-deam  46 rgepasrksdllaelgakseyttasHVEgkaAawmrengi 85 
                   r+++a+r+ ++la++       t++HVE  +A+++r+++ 
    KOO20787.1 487 REGAAARVEQHLAGTL----KVTKQHVEVAVAVHVRRRDR 522
                   6778888888888888....89**************9875 PP

  == domain 10  score: 3.4 bits;  conditional E-value: 0.0037
  SCP1201-deam  58 aelgakseyttasHVEgkaAawmreng 84 
                   a+++    +  ++HVE  +A+++r+++
    KOO20787.1 535 AGTA----RVPKQHVEVAVAVHVRRRD 557
                   4444....67789***********976 PP

  == domain 11  score: 3.0 bits;  conditional E-value: 0.0048
  SCP1201-deam  48 epasrksdllaelgakseyttasHVEgkaAawmren 83 
                   ++a+r+ ++ a+++       ++HVE  +A+++r++
    KOO20787.1 574 GAAARVEQHSAGTA----IVPKQHVEVAVAVHVRRR 605
                   55555666666666....77789**********986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (606 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       505  (0.0281667); expected 358.6 (0.02)
Passed bias filter:                      124  (0.00691617); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.61u 0.24s 00:00:00.85 Elapsed: 00:00:00.43
# Mc/sec: 4237.96
//
Query:       KOO20788.1  [L=67]
Description: hypothetical protein Ctob_000189 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (67 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       260  (0.0145016); expected 358.6 (0.02)
Passed bias filter:                      195  (0.0108762); expected 358.6 (0.02)
Passed Vit filter:                        10  (0.000557756); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.24s 00:00:00.58 Elapsed: 00:00:00.40
# Mc/sec: 503.14
//
Query:       KOO20789.1  [L=258]
Description: hypothetical protein Ctob_000191 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (258 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       562  (0.0313459); expected 358.6 (0.02)
Passed bias filter:                      462  (0.0257683); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.44u 0.24s 00:00:00.68 Elapsed: 00:00:00.40
# Mc/sec: 1942.50
//
Query:       KOO20790.1  [L=757]
Description: hypothetical protein Ctob_000186, partial [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.3e-08   33.4   0.2      4e-05   24.0   0.2    2.3  2  PhyH      Phytanoyl-CoA dioxygenase (PhyH)
    2.6e-07   30.6   0.0        6.2    7.0   0.0    6.1  7  SepRS_C   O-phosphoseryl-tRNA synthetase C-terminal domain


Domain annotation for each model (and alignments):
>> PhyH  Phytanoyl-CoA dioxygenase (PhyH)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.0   0.0   0.00067         6       3      28 ..     502     527 ..     500     567 .. 0.87
   2 !   24.0   0.2   4.4e-09     4e-05     128     202 ..     669     747 ..     634     754 .. 0.75

  Alignments for each domain:
  == domain 1  score: 7.0 bits;  conditional E-value: 0.00067
                 HHSEEEETTSS-HHHHHHHHHHHHHH CS
        PhyH   3 edGylviegflsaeevealraeieal 28 
                 +dGy+v++g+ls +e+++ ++++ ++
  KOO20790.1 502 KDGYIVLPGVLSTSECAEELSRMWEY 527
                 79***************998888776 PP

  == domain 2  score: 24.0 bits;  conditional E-value: 4.4e-09
                 EEESS-B-TTBT-EEEETTGGGS-CCGTCCHHCSGCCTTS..........CCCTTTGHGSCEEEE.BTTTEEEEEETTSEEEE-T CS
        PhyH 128 wialedateenGclrfiPGSHkweegplrrrlpeddteae..........ddeakkedeeeavpvevkaGdavlfhgrllHgsga 202
                  + l d + e  c  + PGSH+  +++   +   ++   +          + ++ +++  e   v+vkaGd++l+ ++l+H +++
  KOO20790.1 669 STSLLDQQSEDACFLCWPGSHRCHQQL---TKSTHR---GrshwvpltdaELDELRAAGLEPRRVPVKAGDVILWRSDLAHSAAP 747
                 56677888999***********95553...222222...22335888876556666667777889*****************987 PP

>> SepRS_C  O-phosphoseryl-tRNA synthetase C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.0   0.0   0.00069       6.2       7      14 ..      58      65 ..      57      79 .. 0.77
   2 ?   -2.7   0.0      0.77   6.9e+03       7      15 ..     102     111 ..     102     117 .. 0.76
   3 !    4.8   0.0    0.0035        31       6      16 ..     148     158 ..     148     164 .. 0.88
   4 ?    1.1   0.0     0.049   4.4e+02       7      14 ..     198     205 ..     198     212 .. 0.88
   5 !    5.1   0.0    0.0028        25       7      20 ..     242     256 ..     241     264 .. 0.86
   6 ?    3.3   0.0      0.01        92       7      15 ..     342     351 ..     341     355 .. 0.84
   7 ?   -2.6   0.0      0.71   6.4e+03       3      17 ..     382     397 ..     382     401 .. 0.80

  Alignments for each domain:
  == domain 1  score: 7.0 bits;  conditional E-value: 0.00069
                TTEEEEEE CS
     SepRS_C  7 dGnIlGvP 14
                dGn++GvP
  KOO20790.1 58 DGNVYGVP 65
                8******* PP

  == domain 2  score: -2.7 bits;  conditional E-value: 0.77
                 TTEEEEEE.S CS
     SepRS_C   7 dGnIlGvP.d 15 
                 dG I+ +P  
  KOO20790.1 102 DGAIYCIPsH 111
                 89***99944 PP

  == domain 3  score: 4.8 bits;  conditional E-value: 0.0035
                 ETTEEEEEES- CS
     SepRS_C   6 YdGnIlGvPdt 16 
                 +dG I+G+P +
  KOO20790.1 148 HDGCIYGIPQF 158
                 8********64 PP

  == domain 4  score: 1.1 bits;  conditional E-value: 0.049
                 TTEEEEEE CS
     SepRS_C   7 dGnIlGvP 14 
                 dG I+G+P
  KOO20790.1 198 DGCIYGIP 205
                 789***** PP

  == domain 5  score: 5.1 bits;  conditional E-value: 0.0028
                 TTEEEEEE.S-TTTC CS
     SepRS_C   7 dGnIlGvP.dtekwk 20 
                 dG I+G+P + +++ 
  KOO20790.1 242 DGCIYGIPaNADGVL 256
                 899*****9999875 PP

  == domain 6  score: 3.3 bits;  conditional E-value: 0.01
                 TTEEEEEE.S CS
     SepRS_C   7 dGnIlGvP.d 15 
                 dG I+G+P +
  KOO20790.1 342 DGRIYGIPlK 351
                 899*****54 PP

  == domain 7  score: -2.6 bits;  conditional E-value: 0.71
                 EEEETTEEEEEE.S-T CS
     SepRS_C   3 vyVYdGnIlGvP.dte 17 
                 v  +dG  + +P + +
  KOO20790.1 382 VLAHDGAMYCIPmRHK 397
                 5679***999996655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (757 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       442  (0.0246528); expected 358.6 (0.02)
Passed bias filter:                      403  (0.0224776); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.60u 0.27s 00:00:00.87 Elapsed: 00:00:00.44
# Mc/sec: 5177.94
//
Query:       KOO20791.1  [L=611]
Description: btb poz domain containing protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.9e-30  105.1   0.1    1.9e-06   28.6   0.0    5.3  5  Filamin     Filamin/ABP280 repeat
    2.1e-09   37.5  10.5    0.00035   20.8   0.0    4.9  5  Invasin_D3  Invasin, domain 3
     0.0087   16.1   0.4        9.1    6.4   0.0    5.3  6  Big_1       Bacterial Ig-like domain (group 1)


Domain annotation for each model (and alignments):
>> Filamin  Filamin/ABP280 repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.0   6.5e-06     0.039      71     102 ..      43      76 ..      38      77 .. 0.90
   2 !   28.6   0.0   3.3e-10   1.9e-06      19     102 ..     107     197 ..      87     198 .. 0.71
   3 !   19.4   0.0   2.4e-07    0.0015       5      90 ..     209     298 ..     207     316 .. 0.75
   4 !   15.4   0.1   4.2e-06     0.025      25     102 ..     315     463 ..     302     464 .. 0.62
   5 !   20.4   0.0   1.1e-07   0.00068      20      94 ..     493     571 ..     473     577 .. 0.78

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 6.5e-06
                 SSEEEEEE--SSSCEEEEEEEETTC..E-TTSSE CS
     Filamin  71 dgtytvsYtpeepgtyrvsvkldgk..higgsPf 102
                 + t++v+Y ++ +g+y ++v+++++  +i+gsPf
  KOO20791.1  43 HETHKVNYSINSVGRYLLHVRVRDQsrPIAGSPF 76 
                 5799******************88545******9 PP

  == domain 2  score: 28.6 bits;  conditional E-value: 3.3e-10
                 TTS-EEEEEEESSSTSCCCSTTS..EEEEE..ESSTS...................EEEEEEEE-SSSEEEEEE--SSSCEEEEEEEETTCE-TTSSE CS
     Filamin  19 agesltFtvytkdakgeksevggdelqvrivtgsphgaatks..............svkievvdnedgtytvsYtpeepgtyrvsvkldgkhiggsPf 102
                 ag+  +  v t d  g+ ++ gg     +++tg+  ++   +              ++   ++dn dgty+ +++ ++ g++ v+v ++g++++gsP 
  KOO20791.1 107 AGDGCQLVVRTYDRTGNMCRAGG----AKVTTGKMMSR---KlqlqgqgveggiigDLRSTCIDNADGTYRLTWKSKKRGPVDVEVLINGQPVRGSPT 197
                 55556667777777777777655....33322222222...01122334455666678889************************************5 PP

  == domain 3  score: 19.4 bits;  conditional E-value: 2.4e-07
                 TSEEEESGGGTEEETTS-EEEEEEESSSTSCCCSTTS..EEEEE.....ESSTS.........EEEEEEEE-SSSEEEEEE--SSSCEEEEEE CS
     Filamin   5 skskvnGpGieasvagesltFtvytkdakgeksevggdelqvriv...tgsphgaatks....svkievvdnedgtytvsYtpeepgtyrvsv 90 
                 +k +++G+G++ +vag+++ ++  + d++++ s     e + r+v   t+s+++ ++++    + k e +    g y+vsY ++++g   ++v
  KOO20791.1 209 HKTVLSGEGLKMAVAGRPAPIKLALSDEYNNASSP---EAGWRVVlaiTNSKKKLNDIEdgktDYKGEWSLTVPGEYNVSYIATQAGSTDLHV 298
                 68899**************************8875...333333333467776665554555555556777779*************999998 PP

  == domain 4  score: 15.4 bits;  conditional E-value: 4.2e-06
                 EEEEESSSTSCCCSTTS..EEEEE.......ESSTS............................................................... CS
     Filamin  25 Ftvytkdakgeksevggdelqvriv.....tgsphgaatk........................................................... 59 
                 F+v++   + + s ++ d++ v  v      gs      +                                                           
  KOO20791.1 315 FSVHVTSGEADASNSKLDQWSVAAVassksKGS------Pnskstkeqaaesaamvksrvatagdtvsvrasgidqygnvahmmpemlraivvkpdkts 407
                 666666444455555556666666443333333......233444466777777777777777777766666666666666666555555555444444 PP

                 ...............EEEEEEEE-SSSEEEEEE--SSSCEEEEEEEETTCE-TTSSE CS
     Filamin  60 .s.............svkievvdnedgtytvsYtpeepgtyrvsvkldgkhiggsPf 102
                  +             + +++ + +   +y+v+  + ++gty++ v+l+g +i +sP 
  KOO20791.1 408 fQqpmsdvtkaikggK-DVQAKGSTSTMYEVRLEAITSGTYELAVELGGVPIVNSPI 463
                 4044444444444432.33455555789****************************7 PP

  == domain 5  score: 20.4 bits;  conditional E-value: 1.1e-07
                 TS-EEEEEEESSSTSCCCSTTS..EEEEE..ESSTS.........EEEEEEEE-SSSEEEEEE--SSSCEEEEEEEETT CS
     Filamin  20 gesltFtvytkdakgeksevggdelqvrivtgsphgaatks....svkievvdnedgtytvsYtpeepgtyrvsvkldg 94 
                   + t+t +t d +g+++ vgg ++  r+ + +++++ + +    +   +vvdn+dgty +   +++  t+++ + +d+
  KOO20791.1 493 EAPSTVTLHTYDRYGNRCIVGGLRVAGRLAIVKQSQSDNTVlqpnNNSLNVVDNGDGTYSILVAVMMTSTVKLIINMDK 571
                 56789***************997777555545555554453445555679************************99987 PP

>> Invasin_D3  Invasin, domain 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.8   0.0   5.9e-08   0.00035      28      94 ..     117     202 ..     109     204 .. 0.64
   2 ?    0.1   0.0      0.17     1e+03      24      72 ..     229     280 ..     225     297 .. 0.61
   3 ?   -1.7   0.8       0.6   3.6e+03      30      80 ..     325     379 ..     317     389 .. 0.58
   4 !    4.7   0.1    0.0063        38      55      87 ..     428     460 ..     404     465 .. 0.72
   5 !   14.4   0.1   6.1e-06     0.036      11      67 ..     485     556 ..     474     577 .. 0.68

  Alignments for each domain:
  == domain 1  score: 20.8 bits;  conditional E-value: 5.9e-08
  Invasin_D3  28 lkDangnp..vsgltvtfstt............sagtlsavt....dngdGtytatLtattagtatitptvnGvaiaatat.vtlt 94 
                   D  gn   ++g++vt  +             + g +++++    dn+dGty  t ++++ g + +++ +nG+    ++t ++++
  KOO20791.1 117 TYDRTGNMcrAGGAKVTTGKMmsrklqlqgqgvEGGIIGDLRstciDNADGTYRLTWKSKKRGPVDVEVLINGQPVRGSPTrLDFV 202
                 5666677665556666665333344444333322234444335566***************************5555444437776 PP

  == domain 2  score: 0.1 bits;  conditional E-value: 0.17
  Invasin_D3  24 ltvtlkDangnp...vsgltvtfstt.sagtlsavtdngdGtytatLtattag 72 
                 +++ l D+ +n+    +g  v+++ t s+ +l++++ +g+  y+ + + t  g
  KOO20791.1 229 IKLALSDEYNNAsspEAGWRVVLAITnSKKKLNDIE-DGKTDYKGEWSLTVPG 280
                 678899999999765667778888772333555552.2223344444334444 PP

  == domain 3  score: -1.7 bits;  conditional E-value: 0.6
  Invasin_D3  30 Dangnpvsgltvtfstt..sag.tlsavtdngdGtytatLta.ttagtatitptv 80 
                 Da++  +   +v+  ++  s+g   s+ t++++    a +++  ++   t+++  
  KOO20791.1 325 DASNSKLDQWSVAAVASskSKGsPNSKSTKEQAAESAAMVKSrVATAGDTVSVRA 379
                 6666665555554444433466555566777777777777775333333444444 PP

  == domain 4  score: 4.7 bits;  conditional E-value: 0.0063
  Invasin_D3  55 tdngdGtytatLtattagtatitptvnGvaiaa 87 
                 + + + +y++ L a t+gt+ + ++++Gv i +
  KOO20791.1 428 KGSTSTMYEVRLEAITSGTYELAVELGGVPIVN 460
                 3344468*********************77665 PP

  == domain 5  score: 14.4 bits;  conditional E-value: 6.1e-06
  Invasin_D3  11 pasivAdGkststltvtlkDangnp..vsgltvtfstt.......sag.tls......avtdngdGtytatLt 67 
                  + + Ad ++ st+t+   D  gn   v+gl v+           +   +l+      +v dngdGty+  + 
  KOO20791.1 485 AEALRADLEAPSTVTLHTYDRYGNRciVGGLRVAGRLAivkqsqsD-NtVLQpnnnslNVVDNGDGTYSILVA 556
                 455789********************97777776653333333321.23222334445677*******97664 PP

>> Big_1  Bacterial Ig-like domain (group 1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.7   0.0      0.09   5.4e+02       9      36 ..      60      86 ..      56      99 .. 0.83
   2 !    6.4   0.0    0.0015       9.1      37      63 ..     158     184 ..     147     185 .. 0.85
   3 ?   -0.1   0.1      0.16   9.5e+02      25      52 ..     248     278 ..     234     297 .. 0.60
   4 ?   -3.1   0.1       1.4   8.1e+03       5      19 ..     373     387 ..     369     388 .. 0.52
   5 ?   -3.1   0.1       1.4   8.5e+03      18      32 ..     455     469 ..     454     476 .. 0.82
   6 ?   -0.3   0.0      0.19   1.1e+03       1      19 [.     490     508 ..     490     510 .. 0.87

  Alignments for each domain:
  == domain 1  score: 0.7 bits;  conditional E-value: 0.09
       Big_1  9 ltatvkDangnpvagatVtfsvsggals 36
                l ++v+D++  p+ag +  + v  g++s
  KOO20791.1 60 LHVRVRDQS-RPIAGSPFALVVEPGVAS 86
                679****77.9****9998888888776 PP

  == domain 2  score: 6.4 bits;  conditional E-value: 0.0015
       Big_1  37 assgtTdanGkatvtltstkagtvtvt 63 
                  s+ + +a+G+++ t +s+k g v+v 
  KOO20791.1 158 RSTCIDNADGTYRLTWKSKKRGPVDVE 184
                 68999*******************997 PP

  == domain 3  score: -0.1 bits;  conditional E-value: 0.16
       Big_1  25 tVtfsvsg..gals...assgtTdanGkatvtl 52 
                  V + +++            g+Td +G+ + t+
  KOO20791.1 248 RVVLAITNskK--KlndIEDGKTDYKGEWSLTV 278
                 55566666422..22466666666666655554 PP

  == domain 4  score: -3.1 bits;  conditional E-value: 1.4
       Big_1   5 dtntltatvkDangn 19 
                 dt+ ++a   D++gn
  KOO20791.1 373 DTVSVRASGIDQYGN 387
                 455555555555555 PP

  == domain 5  score: -3.1 bits;  conditional E-value: 1.4
       Big_1  18 gnpvagatVtfsvsg 32 
                 g p+ + +++f v  
  KOO20791.1 455 GVPIVNSPIKFDVEP 469
                 789*******99875 PP

  == domain 6  score: -0.3 bits;  conditional E-value: 0.19
       Big_1   1 AdGvdtntltatvkDangn 19 
                 Ad  + +t+t +  D++gn
  KOO20791.1 490 ADLEAPSTVTLHTYDRYGN 508
                 5667899***********9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (611 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       563  (0.0314016); expected 358.6 (0.02)
Passed bias filter:                      410  (0.022868); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.56u 0.28s 00:00:00.84 Elapsed: 00:00:00.43
# Mc/sec: 4219.80
//
Query:       KOO20792.1  [L=1075]
Description: hypothetical protein Ctob_000184 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1075 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1574  (0.0877907); expected 358.6 (0.02)
Passed bias filter:                      546  (0.0304535); expected 358.6 (0.02)
Passed Vit filter:                        49  (0.002733); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.85u 0.29s 00:00:01.13 Elapsed: 00:00:00.47
# Mc/sec: 6883.92
//
Query:       KOO20793.1  [L=273]
Description: hypothetical protein Ctob_000182 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.2e-07   31.9   0.6    1.5e-05   25.2   1.1    2.8  2  Josephin  Josephin


Domain annotation for each model (and alignments):
>> Josephin  Josephin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.2   1.1   8.2e-10   1.5e-05       1      31 [.      95     125 ..      95     130 .. 0.91
   2 !    2.7   0.0    0.0067   1.2e+02      78      78 ..     187     187 ..     135     267 .. 0.53

  Alignments for each domain:
  == domain 1  score: 25.2 bits;  conditional E-value: 8.2e-10
    Josephin   1 qkrqlCalHalNnLlQgeaftaseLaeiAte 31 
                 q++  Ca+Ha+NnLlQg++ + ++L++iA++
  KOO20793.1  95 QQDHHCAVHAINNLLQGPYVSFATLQAIADQ 125
                 77889************************97 PP

  == domain 2  score: 2.7 bits;  conditional E-value: 0.0067
    Josephin  78 a 78 
                  
  KOO20793.1 187 Q 187
                 0 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (273 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       364  (0.0203023); expected 358.6 (0.02)
Passed bias filter:                      257  (0.0143343); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.25s 00:00:00.70 Elapsed: 00:00:00.43
# Mc/sec: 1925.15
//
Query:       KOO20794.1  [L=334]
Description: er membrane protein complex subunit 2 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.6e-07   31.7   7.4     0.0046   17.5   0.3    4.4  4  TPR_19      Tetratricopeptide repeat
    4.2e-07   30.2   5.3      0.075   13.9   0.7    5.3  5  TPR_14      Tetratricopeptide repeat
    5.7e-07   29.2   9.5      0.062   13.4   0.5    4.8  5  TPR_2       Tetratricopeptide repeat
    7.3e-07   29.7   3.0     0.0011   19.6   0.1    4.1  4  TPR_16      Tetratricopeptide repeat
     0.0022   17.7   2.8      0.024   14.4   0.6    2.1  2  YfiO        Outer membrane lipoprotein
     0.0038   17.3   6.2        3.7    8.0   0.1    4.3  4  TPR_8       Tetratricopeptide repeat
  ------ inclusion threshold ------
      0.013   15.7   3.7      0.048   13.9   2.1    2.4  2  ANAPC3      Anaphase-promoting complex, cyclosome, subunit 3
      0.017   13.6   0.3      0.022   13.2   0.3    1.1  1  ST7         ST7 protein
      0.042   13.9   6.4      0.086   12.9   0.2    3.5  4  Fis1_TPR_C  Fis1 C-terminal tetratricopeptide repeat
      0.052   13.7   4.1         11    6.3   0.8    3.7  4  TPR_9       Tetratricopeptide repeat
       0.07   13.0   7.5        6.9    6.7   0.5    4.0  4  TPR_1       Tetratricopeptide repeat
        0.7   10.0   3.8        7.6    6.7   4.0    2.2  1  BRE1        BRE1 E3 ubiquitin ligase
        1.3    9.8   3.6         61    4.6   0.1    4.2  4  TPR_6       Tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> TPR_19  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.0   0.1     0.025        35      40      67 ..      97     124 ..      92     125 .. 0.90
   2 !   17.5   0.3   3.3e-06    0.0046       3      51 ..     128     176 ..     126     180 .. 0.92
   3 !    7.6   0.0    0.0039       5.4      26      64 ..     185     222 ..     182     225 .. 0.86
   4 ?    2.7   0.0      0.13   1.8e+02       6      30 ..     242     266 ..     239     276 .. 0.85

  Alignments for each domain:
  == domain 1  score: 5.0 bits;  conditional E-value: 0.025
      TPR_19  40 qldeAealLdalpeedpddaryasLlAk 67 
                 +l +A++  ++l +++p ++r+++L A 
  KOO20794.1  97 DLRKAQQYTATLTKQFPSSQRVRRLEAM 124
                 7889********************9886 PP

  == domain 2  score: 17.5 bits;  conditional E-value: 3.3e-06
      TPR_19   3 aegdyaeAlalleqalqedpknaearllLAeallalgqldeAealLdal 51 
                 a+  y eA + ++++l+edp+n+ a  + + ++ + g+++eA + L+++
  KOO20794.1 128 ARREYGEAEKEYKAILEEDPHNLQAVKRQIALHRQKGEVKEAVKKLNDY 176
                 6789**************************************9988776 PP

  == domain 3  score: 7.6 bits;  conditional E-value: 0.0039
      TPR_19  26 earllLAeallalgqldeAealLdalpeedpddaryasL 64 
                 ea+  L e++l++  ++eA  ++++l + +p  +++  +
  KOO20794.1 185 EAWVMLHELYLSAQKYKEAAFCIEELVLINPM-SYIYLV 222
                 7899999*******************999998.776655 PP

  == domain 4  score: 2.7 bits;  conditional E-value: 0.13
      TPR_19   6 dyaeAlalleqalqedpknaearll 30 
                 ++  A ++++ al+ +p+ ++a+++
  KOO20794.1 242 QLLTARKYFAHALELKPGCLRALYG 266
                 56689*************9999996 PP

>> TPR_14  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.9   0.0     0.091   1.3e+02      13      40 ..      94     121 ..      90     124 .. 0.88
   2 !   13.9   0.7   5.4e-05     0.075       8      40 ..     123     155 ..     119     159 .. 0.86
   3 !    9.4   0.0    0.0015       2.1       5      42 ..     154     191 ..     151     193 .. 0.87
   4 ?    1.7   0.0      0.44   6.1e+02       2      30 ..     185     213 ..     184     215 .. 0.83
   5 ?    2.0   0.0      0.36     5e+02      19      38 ..     245     264 ..     236     269 .. 0.81

  Alignments for each domain:
  == domain 1  score: 3.9 bits;  conditional E-value: 0.091
      TPR_14  13 alGdpdeAiallrralalaPddaeawll 40 
                  ++d+++A ++   + +++P+++++++l
  KOO20794.1  94 DSEDLRKAQQYTATLTKQFPSSQRVRRL 121
                 578999******************9975 PP

  == domain 2  score: 13.9 bits;  conditional E-value: 5.4e-05
      TPR_14   8 aeallalGdpdeAiallrralalaPddaeawll 40 
                 a +l+a++++ eA++ ++++l+ +P +++a  +
  KOO20794.1 123 AMLLEARREYGEAEKEYKAILEEDPHNLQAVKR 155
                 66799**********************988754 PP

  == domain 3  score: 9.4 bits;  conditional E-value: 0.0015
      TPR_14   5 lalaeallalGdpdeAiallrralalaPddaeawllla 42 
                 ++  +++++ G+ +eA++ l+++l ++ +d eaw +l 
  KOO20794.1 154 KRQIALHRQKGEVKEAVKKLNDYLTTFCSDMEAWVMLH 191
                 566788999*****************99999***9985 PP

  == domain 4  score: 1.7 bits;  conditional E-value: 0.44
      TPR_14   2 eallalaeallalGdpdeAiallrralal 30 
                 ea+ +l e++l +++++eA+ + ++++  
  KOO20794.1 185 EAWVMLHELYLSAQKYKEAAFCIEELVLI 213
                 789999999**********9988887655 PP

  == domain 5  score: 2.0 bits;  conditional E-value: 0.36
      TPR_14  19 eAiallrralalaPddaeaw 38 
                 +A++++  al+l P+ ++a+
  KOO20794.1 245 TARKYFAHALELKPGCLRAL 264
                 59************999887 PP

>> TPR_2  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.0       7.6   1.1e+04      15      29 ..      96     110 ..      92     114 .. 0.65
   2 !   13.4   0.5   4.5e-05     0.062       7      34 .]     122     149 ..     117     149 .. 0.92
   3 ?    1.1   0.1       0.4   5.5e+02      10      25 ..     159     174 ..     158     177 .. 0.85
   4 !   10.4   0.0   0.00043       0.6      10      32 ..     193     215 ..     185     217 .. 0.91
   5 !    6.6   0.0    0.0071       9.8      20      33 ..     246     259 ..     240     260 .. 0.89

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 7.6
       TPR_2  15 gdyeeAleafekAle 29 
                  d+ +A ++     +
  KOO20794.1  96 EDLRKAQQYTATLTK 110
                 567777777666555 PP

  == domain 2  score: 13.4 bits;  conditional E-value: 4.5e-05
       TPR_2   7 lGlayyklgdyeeAleafekAleldPnn 34 
                  +++++++ +y eA++ +++ le dP+n
  KOO20794.1 122 EAMLLEARREYGEAEKEYKAILEEDPHN 149
                 6899**********************97 PP

  == domain 3  score: 1.1 bits;  conditional E-value: 0.4
       TPR_2  10 ayyklgdyeeAleafe 25 
                 +++++g+ +eA++ ++
  KOO20794.1 159 LHRQKGEVKEAVKKLN 174
                 6899*******99875 PP

  == domain 4  score: 10.4 bits;  conditional E-value: 0.00043
       TPR_2  10 ayyklgdyeeAleafekAleldP 32 
                 +y+ +++y+eA+ + e+ + ++P
  KOO20794.1 193 LYLSAQKYKEAAFCIEELVLINP 215
                 7999*****************99 PP

  == domain 5  score: 6.6 bits;  conditional E-value: 0.0071
       TPR_2  20 AleafekAleldPn 33 
                 A+++f  Alel P+
  KOO20794.1 246 ARKYFAHALELKPG 259
                 9***********97 PP

>> TPR_16  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.1   0.4   2.3e-06    0.0032       9      66 ..      94     148 ..      91     149 .. 0.94
   2 !   19.6   0.1   7.9e-07    0.0011       3      61 ..     122     177 ..     120     185 .. 0.91
   3 ?    4.4   0.0     0.042        58       6      54 ..     159     204 ..     155     214 .. 0.89
   4 ?    4.6   0.0     0.037        51      16      49 ..     246     276 ..     242     280 .. 0.92

  Alignments for each domain:
  == domain 1  score: 18.1 bits;  conditional E-value: 2.3e-06
      TPR_16   9 ragdyddAaaaleaalkrdpssPdaaeAllllgdaalrqgrlaeAaalyraalraapd 66 
                 ++ d ++A+ +  +++k++   P   + + l + ++ ++ ++ eA+  y+a l+++p 
  KOO20794.1  94 DSEDLRKAQQYTATLTKQF---PSSQRVRRLEAMLLEARREYGEAEKEYKAILEEDPH 148
                 78999**************...99999****************************997 PP

  == domain 2  score: 19.6 bits;  conditional E-value: 7.9e-07
      TPR_16   3 laraalragdyddAaaaleaalkrdpssPdaaeAllllgdaalrqgrlaeAaalyraal 61 
                 +a+++ ++++y +A++ ++a l+ d   P + +A      ++ ++g+++eA+  ++ +l
  KOO20794.1 122 EAMLLEARREYGEAEKEYKAILEED---PHNLQAVKRQIALHRQKGEVKEAVKKLNDYL 177
                 68899999*****************...************************7776665 PP

  == domain 3  score: 4.4 bits;  conditional E-value: 0.042
      TPR_16   6 aalragdyddAaaaleaalkrdpssPdaaeAllllgdaalrqgrlaeAa 54 
                 ++++ g+  +A++ l+ +l  +     + eA+  l +++l ++ ++eAa
  KOO20794.1 159 LHRQKGEVKEAVKKLNDYLTTF---CSDMEAWVMLHELYLSAQKYKEAA 204
                 5778899999999999999999...999999999999999999999997 PP

  == domain 4  score: 4.6 bits;  conditional E-value: 0.037
      TPR_16  16 AaaaleaalkrdpssPdaaeAllllgdaalrqgr 49 
                 A++++  al++    P + +Al++  ++++++g 
  KOO20794.1 246 ARKYFAHALELK---PGCLRALYGILLVCAAFGS 276
                 999*********...*************999986 PP

>> YfiO  Outer membrane lipoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.4   0.6   1.7e-05     0.024      86     144 ..      73     136 ..      52     155 .. 0.75
   2 ?    3.2   0.1     0.046        63      17      74 ..     162     216 ..     155     247 .. 0.82

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 1.7e-05
                 HHHHHHHHSHSC.....TTTS-THHHHHHHHHHHHHHHHSTTSTTHHHHHHHHHHHHHHHHHHH CS
        YfiO  86 glsalaqarell.....rskrdpesarqafedfkklvekyPdseYaadakkrltelrerLArhE 144
                 +  al q  ++       ++ d+e +r+a ++ ++l++++P+s+  + ++++l e+r+   + E
  KOO20794.1  73 VYMALLQHGRVApgstnAASADSEDLRKAQQYTATLTKQFPSSQRVRRLEAMLLEARREYGEAE 136
                 333333333333344466799*********************************9998764443 PP

  == domain 2  score: 3.2 bits;  conditional E-value: 0.046
                 HHT-HHHHHHHHHHHHHHSTTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-SS CS
        YfiO  17 qkgdyaeAikklealdsryPfspyaeqaqldliyAyykdadyaealasaerFlrlyPt 74 
                 qkg+++eA+kkl++  + +   +   +a ++l   y++++ y ea++ +e+ +  +P 
  KOO20794.1 162 QKGEVKEAVKKLNDYLTTFCS-D--MEAWVMLHELYLSAQKYKEAAFCIEELVLINPM 216
                 79999*******999999964.3..356667777789999999999999998888886 PP

>> TPR_8  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.6   0.4     0.033        45       8      33 ..     123     148 ..     121     149 .. 0.88
   2 ?   -1.3   0.0       2.6   3.6e+03      10      22 ..     159     171 ..     159     177 .. 0.82
   3 !    8.0   0.1    0.0027       3.7       2      32 ..     185     215 ..     185     215 .. 0.91
   4 ?    4.6   0.0     0.032        44      20      33 ..     246     259 ..     242     260 .. 0.89

  Alignments for each domain:
  == domain 1  score: 4.6 bits;  conditional E-value: 0.033
                 HHHHHHTT-HHHHHHHHHHHHHHHHH CS
       TPR_8   8 gsiylklgdyeeAkeyyekaleldpd 33 
                 +++++   +y eA++ y+  le dp 
  KOO20794.1 123 AMLLEARREYGEAEKEYKAILEEDPH 148
                 678888899*************9997 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 2.6
                 HHHHTT-HHHHHH CS
       TPR_8  10 iylklgdyeeAke 22 
                 +++++g+ +eA++
  KOO20794.1 159 LHRQKGEVKEAVK 171
                 5789999999987 PP

  == domain 3  score: 8.0 bits;  conditional E-value: 0.0027
                 CHHHHHHHHHHHTT-HHHHHHHHHHHHHHHH CS
       TPR_8   2 eayynlgsiylklgdyeeAkeyyekaleldp 32 
                 ea+++l  +yl+ ++y+eA  ++e+ + ++p
  KOO20794.1 185 EAWVMLHELYLSAQKYKEAAFCIEELVLINP 215
                 578888899******************9998 PP

  == domain 4  score: 4.6 bits;  conditional E-value: 0.032
                 HHHHHHHHHHHHHH CS
       TPR_8  20 Akeyyekaleldpd 33 
                 A +y+ +alel+p 
  KOO20794.1 246 ARKYFAHALELKPG 259
                 99**********96 PP

>> ANAPC3  Anaphase-promoting complex, cyclosome, subunit 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.3   0.1      0.29   4.1e+02      37      78 ..      96     138 ..      91     142 .. 0.88
   2 ?   13.9   2.1   3.5e-05     0.048      15      81 ..     142     209 ..     128     210 .. 0.82

  Alignments for each domain:
  == domain 1  score: 1.3 bits;  conditional E-value: 0.29
                 T-HHHHHHHHHCT.SHHHC-HHHHHHHHHHHHHTT-HHHHHHH CS
      ANAPC3  37 gqykrAyellrka.klnskslgcrylfAqcllkLkkyeeAiaa 78 
                 ++  +A++++ ++ k+ ++s+++r l A  l +  +y eA++ 
  KOO20794.1  96 EDLRKAQQYTATLtKQFPSSQRVRRLEAMLLEARREYGEAEKE 138
                 67789999999999999***********999999999999875 PP

  == domain 2  score: 13.9 bits;  conditional E-value: 3.5e-05
                 HH.HHH--HHHHHHHHHHHHHTT-HHHHHHHHHCT.SHHHC-HHHHHHHHHHHHHTT-HHHHHHHH-S CS
      ANAPC3  15 llaaetespedayllAlclylngqykrAyellrka.klnskslgcrylfAqcllkLkkyeeAiaaLek 81 
                 +l+ ++++++++      + + g+ k+A + l+++  + ++++++++ + + +l  +ky+eA  ++e+
  KOO20794.1 142 ILEEDPHNLQAVKRQIALHRQKGEVKEAVKKLNDYlTTFCSDMEAWVMLHELYLSAQKYKEAAFCIEE 209
                 5555555555555566779999*****************************************99987 PP

>> ST7  ST7 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.3   1.6e-05     0.022     220     308 ..     116     201 ..      83     235 .. 0.71

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 1.6e-05
         ST7 220 kkalkvaealykrsqklqsksskeeavhrrdlnvlvyikrrlamcarklgrlkeavkmlrdlikef..pllsvlnihenlleallelqaya 308
                 ++  ++   l++  ++  + +++++a+ + d   l  +kr++a+  r+ g +keavk l d +  f   + + + +he      l  q y 
  KOO20794.1 116 QRVRRLEAMLLEARREYGEAEKEYKAILEEDPHNLQAVKRQIAL-HRQKGEVKEAVKKLNDYLTTFcsDMEAWVMLHE----LYLSAQKYK 201
                 4444554455566777888899999999***99999*******8.6999************99988433444555554....444444444 PP

>> Fis1_TPR_C  Fis1 C-terminal tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.1   0.1      0.72   9.9e+02      16      43 ..      97     124 ..      91     128 .. 0.85
   2 ?   12.9   0.2   6.2e-05     0.086      15      38 ..     130     153 ..     129     161 .. 0.94
   3 ?   -2.5   0.0         4   5.5e+03      15      32 ..     198     215 ..     195     216 .. 0.82
   4 ?    1.6   0.0      0.22     3e+02      19      37 ..     245     263 ..     241     264 .. 0.87

  Alignments for each domain:
  == domain 1  score: -0.1 bits;  conditional E-value: 0.72
                 -HHHHHHHHHHHHHHTTS-HHHHHHHHH CS
  Fis1_TPR_C  16 eYseArryvdalLeiEPenrQaqsLkel 43 
                 + ++A +y+ +l +  P+ + ++ L+++
  KOO20794.1  97 DLRKAQQYTATLTKQFPSSQRVRRLEAM 124
                 7789*******99999999999999887 PP

  == domain 2  score: 12.9 bits;  conditional E-value: 6.2e-05
                 T-HHHHHHHHHHHHHHTTS-HHHH CS
  Fis1_TPR_C  15 geYseArryvdalLeiEPenrQaq 38 
                 +eY eA +  +a+Le +P n Qa 
  KOO20794.1 130 REYGEAEKEYKAILEEDPHNLQAV 153
                 69********************95 PP

  == domain 3  score: -2.5 bits;  conditional E-value: 4
                 T-HHHHHHHHHHHHHHTT CS
  Fis1_TPR_C  15 geYseArryvdalLeiEP 32 
                 ++Y+eA  +++ l  i P
  KOO20794.1 198 QKYKEAAFCIEELVLINP 215
                 679999999999887776 PP

  == domain 4  score: 1.6 bits;  conditional E-value: 0.22
                 HHHHHHHHHHHHTTS-HHH CS
  Fis1_TPR_C  19 eArryvdalLeiEPenrQa 37 
                 +Ar+y    Le+ P++  a
  KOO20794.1 245 TARKYFAHALELKPGCLRA 263
                 7*************98765 PP

>> TPR_9  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.3   0.8    0.0079        11       6      65 ..      93     152 ..      89     160 .. 0.87
   2 ?   -0.4   0.0      0.95   1.3e+03      39      56 ..     160     177 ..     158     186 .. 0.83
   3 ?    5.1   0.0     0.018        25       1      27 [.     190     216 ..     190     229 .. 0.90
   4 ?   -0.7   0.1       1.2   1.6e+03      43      60 ..     241     258 ..     239     264 .. 0.83

  Alignments for each domain:
  == domain 1  score: 6.3 bits;  conditional E-value: 0.0079
       TPR_9   6 ireedweralavverllllaPddpeerrdRGlllaqlGclsaAladLeaylalapdapda 65 
                 + +ed  +a ++   l   +P + + rr  ++ll+ +  + +A ++  a l+ +p++ +a
  KOO20794.1  93 ADSEDLRKAQQYTATLTKQFPSSQRVRRLEAMLLEARREYGEAEKEYKAILEEDPHNLQA 152
                 56788888889999999999***********************************77665 PP

  == domain 2  score: -0.4 bits;  conditional E-value: 0.95
       TPR_9  39 laqlGclsaAladLeayl 56 
                 + q G +++A++ L+ yl
  KOO20794.1 160 HRQKGEVKEAVKKLNDYL 177
                 568899**********99 PP

  == domain 3  score: 5.1 bits;  conditional E-value: 0.018
       TPR_9   1 lkaiaireedweralavverllllaPd 27 
                 l +++++++++ +a  ++e l+l++P 
  KOO20794.1 190 LHELYLSAQKYKEAAFCIEELVLINPM 216
                 6789********************996 PP

  == domain 4  score: -0.7 bits;  conditional E-value: 1.2
       TPR_9  43 GclsaAladLeaylalap 60 
                 ++l +A++ + ++l+l p
  KOO20794.1 241 DQLLTARKYFAHALELKP 258
                 577889999999999988 PP

>> TPR_1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.7   0.5     0.005       6.9       8      34 .]     123     149 ..     121     149 .. 0.92
   2 ?   -1.6   0.0         2   2.7e+03      10      22 ..     159     171 ..     155     171 .. 0.85
   3 ?    5.1   0.1     0.016        22      10      32 ..     193     215 ..     192     217 .. 0.90
   4 ?    2.7   0.0     0.089   1.2e+02      20      33 ..     246     259 ..     242     260 .. 0.90

  Alignments for each domain:
  == domain 1  score: 6.7 bits;  conditional E-value: 0.005
                 HHHHHHTT-HHHHHHHHHHHHHHSTTH CS
       TPR_1   8 GnayfklgkydeAleyyekALelnPnn 34 
                 ++++    +y eA++ y+  Le +P+n
  KOO20794.1 123 AMLLEARREYGEAEKEYKAILEEDPHN 149
                 67888999*****************98 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 2
                 HHHHTT-HHHHHH CS
       TPR_1  10 ayfklgkydeAle 22 
                 +++++g+ +eA++
  KOO20794.1 159 LHRQKGEVKEAVK 171
                 78999*****986 PP

  == domain 3  score: 5.1 bits;  conditional E-value: 0.016
                 HHHHTT-HHHHHHHHHHHHHHST CS
       TPR_1  10 ayfklgkydeAleyyekALelnP 32 
                 +y++ +ky+eA  + e+ + +nP
  KOO20794.1 193 LYLSAQKYKEAAFCIEELVLINP 215
                 799***********999888888 PP

  == domain 4  score: 2.7 bits;  conditional E-value: 0.089
                 HHHHHHHHHHHSTT CS
       TPR_1  20 AleyyekALelnPn 33 
                 A +y+  ALel P 
  KOO20794.1 246 ARKYFAHALELKPG 259
                 889*********96 PP

>> BRE1  BRE1 E3 ubiquitin ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.7   4.0    0.0055       7.6      29      60 ..     114     145 ..      94     175 .. 0.77

  Alignments for each domain:
  == domain 1  score: 6.7 bits;  conditional E-value: 0.0055
        BRE1  29 leekklrleaekakadqkyfaamrskdalene 60 
                   +++ rlea+  +a+++y +a+++ +a+  e
  KOO20794.1 114 SSQRVRRLEAMLLEARREYGEAEKEYKAILEE 145
                 5799*********************9998766 PP

>> TPR_6  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.6   0.1     0.044        61      15      33 .]      97     115 ..      74     115 .. 0.85
   2 ?    1.0   0.1       0.6   8.3e+02       7      32 ..     123     148 ..     121     149 .. 0.83
   3 ?   -0.2   0.0       1.4     2e+03      10      29 ..     160     179 ..     156     180 .. 0.78
   4 ?    0.9   0.0      0.67   9.3e+02       1      27 [.     185     211 ..     185     215 .. 0.79

  Alignments for each domain:
  == domain 1  score: 4.6 bits;  conditional E-value: 0.044
                 HHHHHHHHHHHHHHH-TT- CS
       TPR_6  15 dtdkAlealerlikeYPdS 33 
                 d +kA ++   l k++P S
  KOO20794.1  97 DLRKAQQYTATLTKQFPSS 115
                 899**************98 PP

  == domain 2  score: 1.0 bits;  conditional E-value: 0.6
                 HHHHHHHHHHHHHHHHHHHHHHH-TT CS
       TPR_6   7 alsyrklgdtdkAlealerlikeYPd 32 
                 a+++++  ++ +A + ++ +++e P 
  KOO20794.1 123 AMLLEARREYGEAEKEYKAILEEDPH 148
                 67777766999999999999999996 PP

  == domain 3  score: -0.2 bits;  conditional E-value: 1.4
                 HHHHHHHHHHHHHHHHHHHH CS
       TPR_6  10 yrklgdtdkAlealerlike 29 
                 +r+ g+  +A++ l++ ++ 
  KOO20794.1 160 HRQKGEVKEAVKKLNDYLTT 179
                 55567999****99998876 PP

  == domain 4  score: 0.9 bits;  conditional E-value: 0.67
                 HHHHHHHHHHHHHHHHHHHHHHHHHHH CS
       TPR_6   1 dAlyklalsyrklgdtdkAlealerli 27 
                 +A  +l ++y++++++ +A    e+l+
  KOO20794.1 185 EAWVMLHELYLSAQKYKEAAFCIEELV 211
                 688899999**976***9987777766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (334 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1001  (0.0558313); expected 358.6 (0.02)
Passed bias filter:                      716  (0.0399353); expected 358.6 (0.02)
Passed Vit filter:                        79  (0.00440627); expected 17.9 (0.001)
Passed Fwd filter:                        13  (0.000725082); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 0.57u 0.29s 00:00:00.85 Elapsed: 00:00:00.45
# Mc/sec: 2237.47
//
Query:       KOO20795.1  [L=622]
Description: small subunit processome component 20-like protein, partial [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
        7.3    7.2  18.1         18    6.0   1.0    5.6  6  HEAT_EZ   HEAT-like repeat


Domain annotation for each model (and alignments):
>> HEAT_EZ  HEAT-like repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.5   0.1     0.051   9.1e+02      25      45 ..     147     165 ..     132     167 .. 0.80
   2 ?    4.0   0.0    0.0041        73      19      53 ..     179     216 ..     169     218 .. 0.81
   3 ?    0.4   0.1     0.056     1e+03      41      54 ..     294     307 ..     276     307 .. 0.77
   4 ?    6.0   1.0   0.00099        18       4      33 ..     307     335 ..     297     341 .. 0.86
   5 ?   -3.1   0.1       0.7   1.3e+04      19      39 ..     442     462 ..     437     470 .. 0.60
   6 ?    4.0   1.2    0.0042        75       8      43 ..     541     577 ..     538     582 .. 0.80

  Alignments for each domain:
  == domain 1  score: 0.5 bits;  conditional E-value: 0.051
     HEAT_EZ  25 lvpeilpaLlalLnddsdeVR 45 
                 + p++l+ L+alL  ++++V+
  KOO20795.1 147 EFPALLATLAALL--SPSDVQ 165
                 6789999999999..888775 PP

  == domain 2  score: 4.0 bits;  conditional E-value: 0.0041
     HEAT_EZ  19 pellqplvpeilpaLl...alLnddsdeVRaaAagaLg 53 
                 + ll++l+ ++ +a++   +lL ++ ++VR  Aa  ++
  KOO20795.1 179 KYLLRQLLADLPAAFGayrPLLAHERAHVRDFAAESFS 216
                 5678888888888888888************9998776 PP

  == domain 3  score: 0.4 bits;  conditional E-value: 0.056
     HEAT_EZ  41 sdeVRaaAagaLgn 54 
                  ++ R+aAa aL++
  KOO20795.1 294 APLARGAAAKALAR 307
                 45669999999975 PP

  == domain 4  score: 6.0 bits;  conditional E-value: 0.00099
     HEAT_EZ   4 RraAawaLGrlaggepellqplvpeilpaL 33 
                 R+aAa aL ++ +g++ +  pl p+++ aL
  KOO20795.1 307 REAAAKAL-AVREGGGGDEGPLMPVVVEAL 335
                 89999999.688899999998999888887 PP

  == domain 5  score: -3.1 bits;  conditional E-value: 0.7
     HEAT_EZ  19 pellqplvpeilpaLlalLnd 39 
                 + l +++ + +l+ L al  +
  KOO20795.1 442 DALASTQPQSVLATLFALVHS 462
                 555666666777777665544 PP

  == domain 6  score: 4.0 bits;  conditional E-value: 0.0042
     HEAT_EZ   8 aw.aLGrlaggepellqplvpeilpaLlalLnddsde 43 
                 aw aL  la+ ++++l  l+p+il a  alL ++ d+
  KOO20795.1 541 AWaALKVLAATRSPQLGSLLPRILTAVRALLATPADA 577
                 455665567999*******************988776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (622 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       465  (0.0259356); expected 358.6 (0.02)
Passed bias filter:                      291  (0.0162307); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.55u 0.27s 00:00:00.82 Elapsed: 00:00:00.45
# Mc/sec: 4142.20
//
Query:       KOO20796.1  [L=409]
Description: seipin [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.4e-29  103.6   0.0    2.2e-29  103.0   0.0    1.3  1  Seipin    Putative adipose-regulatory protein (Seipin)
  ------ inclusion threshold ------
        5.9    6.3   4.9       0.85    9.0   0.5    1.7  2  CAP_N     Adenylate cyclase associated (CAP) N terminal


Domain annotation for each model (and alignments):
>> Seipin  Putative adipose-regulatory protein (Seipin)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  103.0   0.0   2.4e-33   2.2e-29       2     193 ..      60     289 ..      59     293 .. 0.88

  Alignments for each domain:
  == domain 1  score: 103.0 bits;  conditional E-value: 2.4e-33
      Seipin   2 illvlavilyilfyyayvpevilskpvhlqygklts...........Pyanvsl...........................nsdssllkenqkYdvsve 62 
                 + ++l+++ly ++y a+vp  +   ++h+   +  +           P  +++l                            s  + l+   +Y v++ 
  KOO20796.1  60 VSFFLSAVLYAALYAAFVPAAEAVHELHFGLCQRPPpaakggaptplPARVARLtftddasallasasgggaagaaaavaaGSIVPPLVRAYEYAVDMC 158
                 679****************************98888777777777775555555777777777777666666666555554445599************ PP

      Seipin  63 LslPeseaNlelGnFmvelellsssgkilanssrpalLpyrsplvrllrtllllpllllglneesqtlrvplaesvvennenpptsarvevqsraapel 161
                 L+lPe+++N ++G F  ++ + s+++++l  + r+ +L+yrs+ vr++ +++++++lllg+  e q   ++l e + + ++ p  +a++ + s++a +l
  KOO20796.1 159 LRLPETPSNIDVGTFLASMRVASARNQSLLAVDRQLVLRYRSERVRAMWSYAFALPLLLGWVDEYQDACLTLTEGFLNLRHDPARRATLALVSPHACKL 257
                 ************************999*************************************************877888888888888888889** PP

      Seipin 162 qiysAklrfeakltglrylmyshpilsfvvft 193
                 q+y+A+l+f+a+l+gl ylm  +  +++ v++
  KOO20796.1 258 QLYAATLTFRARLSGLTYLMTAYSFTAASVGI 289
                 ************************99998886 PP

>> CAP_N  Adenylate cyclase associated (CAP) N terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.4      0.21   1.8e+03     239     266 ..      94     121 ..      77     141 .. 0.48
   2 ?    9.0   0.5   9.4e-05      0.85     237     259 ..     312     334 ..     271     353 .. 0.61

  Alignments for each domain:
  == domain 1  score: -1.9 bits;  conditional E-value: 0.21
                 -XXXXXXX....XXXXXXXX.....XXX CS
       CAP_N 239 asaaaaggpppPpPpPppasvfeeesaa 266
                 +++aa+gg+p P P      +f+++++a
  KOO20796.1  94 PPPAAKGGAPTPLPARVARLTFTDDASA 121
                 3333344423333332233333444333 PP

  == domain 2  score: 9.0 bits;  conditional E-value: 9.4e-05
                 C--XXXXXXX.....XXXXXXXX. CS
       CAP_N 237 aaasaaaagg.pppPpPpPppasv 259
                 +a+++++a++ p p+pPpP p ++
  KOO20796.1 312 EAKAPPPATErPVPAPPPP-PLAP 334
                 3333333333244433333.3222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (409 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       638  (0.0355848); expected 358.6 (0.02)
Passed bias filter:                      338  (0.0188521); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.52u 0.24s 00:00:00.76 Elapsed: 00:00:00.40
# Mc/sec: 3068.25
//
Query:       KOO20797.1  [L=459]
Description: fatty acid desaturase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    5.2e-15   56.0  22.7    5.2e-15   56.0  22.7    2.2  2  FA_desaturase  Fatty acid desaturase


Domain annotation for each model (and alignments):
>> FA_desaturase  Fatty acid desaturase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    2.7   4.6    0.0052        93     117     175 ..      74     129 ..      13     131 .. 0.55
   2 !   56.0  22.7   2.9e-19   5.2e-15       3     238 ..     117     341 ..     113     355 .. 0.71

  Alignments for each domain:
  == domain 1  score: 2.7 bits;  conditional E-value: 0.0052
  FA_desaturase 117 wlrrlarrrapsksrrrkwrllawlllllawlglwlalllllglalllwlvplllllfl 175
                    +  r+   +++   + ++ ++ +wl +    +  +l+l   +++++ lw+vp+ll+ ++
     KOO20797.1  74 LVERMLNDKRDLLLALTFLQVALWLTFTS--VMQLLVLNPNNSWSW-LWIVPHLLITWV 129
                    22233333333333333355555555555..555555555555555.*****9999886 PP

  == domain 2  score: 56.0 bits;  conditional E-value: 2.9e-19
  FA_desaturase   3 wlalllalllglf.llgitg.slaHeaaHgalfkkrklnrwlndll...gal.lglplgisysawrisH.lrHHaytngpdeDpdlaplal.srfe 90 
                    wl +++ ll++++ +++  +   +H aaH  lf ++k+  ++ +ll    ++  + ++g++  a++ +H ++HH  +n  ++D+++ +  + s++ 
     KOO20797.1 117 WLWIVPHLLITWVvFGQR-FiLAMHYAAHIPLF-SKKKIGFAATLLnaiPTTvMCNFYGMPAGAYYVHHcIMHHQANNFFPHDVSSTMPYDrSSPL 210
                    444444489998866555.55********7666.77788888777744433347778888****************77777999999766667777 PP

  FA_desaturase  91 glfryllrlllgllvlgwllalvlglwlrrlarrrapsksrrrkwrllawlllllawlglwlalllllglalllwlvplllllfllalvlnyveHy 186
                     +f+y+++++ +++++            + + + r+++++    + ll+ ++l++ +l ++ +l++         +++ +l+ f+l+l  n+ +H 
     KOO20797.1 211 HFFAYVINFMIHTFLYL---------PFYCIVKKRYDIAGVC--AALLGTYMLAIKFLYAFNPLFFTC-----SLGIASVLGPFALMLG-NFSQHI 289
                    77777888888888877.........4444444444433322..444444444444444444444444.....6667777777777777.****** PP

  FA_desaturase 187 ggdwgerqvetsasirsaswllnlltgnlnyHieHHlfPgvpwyrLpelhrr 238
                    ++d + +   ++ ++++ + ++n lt+n +yHi+HH     +w+++p  + +
     KOO20797.1 290 FVDPDSPSSNYTLACNHVNAPFNMLTFNDGYHITHHVNSVCHWSEMPLNFIK 341
                    *88888888888888899****************************987644 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (459 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       568  (0.0316805); expected 358.6 (0.02)
Passed bias filter:                      286  (0.0159518); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.24s 00:00:00.72 Elapsed: 00:00:00.39
# Mc/sec: 3552.86
//
Query:       KOO20798.1  [L=261]
Description: ankyrin repeat protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    7.9e-18   64.3   1.5      2e-08   34.4   0.1    2.6  3  Ank_5     Ankyrin repeats (many copies)
    1.5e-16   60.8   0.0    8.5e-07   29.5   0.0    2.2  2  Ank_2     Ankyrin repeats (3 copies)
    1.7e-12   47.6   2.5      6e-05   23.5   0.0    4.7  5  Ank_4     Ankyrin repeats (many copies)
    9.6e-12   44.0   0.2      0.016   15.7   0.0    4.5  4  Ank_3     Ankyrin repeat
    1.4e-09   37.9   1.4     0.0008   19.8   0.0    3.7  3  Ank       Ankyrin repeat


Domain annotation for each model (and alignments):
>> Ank_5  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.4   0.1   5.5e-12     2e-08      12      56 .]      67     110 ..      57     110 .. 0.89
   2 ?   -2.4   0.0       1.9   6.7e+03       2      36 ..     122     157 ..     121     163 .. 0.67
   3 !   28.4   0.3     4e-10   1.4e-06       5      53 ..     171     219 ..     168     222 .. 0.87

  Alignments for each domain:
  == domain 1  score: 34.4 bits;  conditional E-value: 5.5e-12
       Ank_5  12 ldgggntpLhvAakygaadvvrlLlargadlnltdsrGltaldlA 56 
                  dg++ tpLh+Aa +g  ++v lLl+ gad +++d++G+t+ +lA
  KOO20798.1  67 VDGDR-TPLHWAAARGFRRCVVLLLEAGADKTARDAQGRTPAELA 110
                 44555.*************************************98 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 1.9
       Ank_5   2 lehg.padvnrldgggntpLhvAakygaadvvrlLl 36 
                 +++g p+d   +  g + p+ + + ++  + +  +l
  KOO20798.1 122 IKYGpPIDDVKKSTGNEGPISQLCLGNKTRELASML 157
                 567777777777777777777777777776666666 PP

  == domain 3  score: 28.4 bits;  conditional E-value: 4e-10
       Ank_5   5 g.padvnrldgggntpLhvAakygaadvvrlLlargadlnltdsrGltal 53 
                   ++++ ++dg++  pLh+Aa +g  ++v+lL++ ga++++ d++G+ta 
  KOO20798.1 171 TiSVNLRDPDGDR-FPLHWAAARGLRTCVNLLIDAGAHIGALDADGNTAA 219
                 5456777777777.**********************************95 PP

>> Ank_2  Ankyrin repeats (3 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.5   0.0   2.4e-10   8.5e-07      12      68 ..      51     118 ..      40     130 .. 0.75
   2 !   29.3   0.1   2.7e-10   9.6e-07      19      81 ..     176     243 ..     144     245 .. 0.79

  Alignments for each domain:
  == domain 1  score: 29.5 bits;  conditional E-value: 2.4e-10
       Ank_2  12 lvklLl.egadpn..k..ngktaLhyAakngnleivklLleh......adndgrtpLhyAarsghlei 68 
                  vk ++  g+++n  +   ++t+Lh+Aa +g + +v lLle+       d +grtp  +A  ++++ei
  KOO20798.1  51 QVKSFIaLGHNVNefDvdGDRTPLHWAAARGFRRCVVLLLEAgadktaRDAQGRTPAELALDCDQFEI 118
                 577777766666655343669**********99*******966555655599****999999888776 PP

  == domain 2  score: 29.3 bits;  conditional E-value: 2.7e-10
       Ank_2  19 gadpnkngktaLhyAakngnleivklLleh......adndgrtpLhyAarsghleivklLlekgadinl 81 
                   dp+  ++++Lh+Aa +g + +v lL+++      +d dg+t+  +A r+++  + +lLl+  +d+n 
  KOO20798.1 176 LRDPD-GDRFPLHWAAARGLRTCVNLLIDAgahigaLDADGNTAAGLAMRFNQRAVHELLLQAIVDVNY 243
                 34555.569**********99*******955558888899************96777777777778886 PP

>> Ank_4  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.5   0.0   1.7e-08     6e-05      10      55 .]      45      90 ..      40      90 .. 0.89
   2 !    6.3   0.0    0.0042        15      15      39 ..      84     107 ..      84     118 .. 0.89
   3 !    8.0   0.1    0.0012       4.4      25      55 .]     172     202 ..     140     202 .. 0.81
   4 !   17.3   0.3   1.5e-06    0.0054       4      54 ..     185     234 ..     185     235 .. 0.91
   5 ?    3.6   0.0      0.03   1.1e+02       9      38 ..     222     255 ..     220     255 .. 0.75

  Alignments for each domain:
  == domain 1  score: 23.5 bits;  conditional E-value: 1.7e-08
       Ank_4 10 isgrlelvrlLlekgadinaqdnrsGetalhiAakrgnveilklLl 55
                +++++  v++ ++ g ++n+ d + ++t+lh Aa rg+ +++ lLl
  KOO20798.1 45 AFNQVTQVKSFIALGHNVNEFDVDGDRTPLHWAAARGFRRCVVLLL 90
                577788899************778888***************9997 PP

  == domain 2  score: 6.3 bits;  conditional E-value: 0.0042
       Ank_4  15 elvrlLlekgadinaqdnrsGetal 39 
                 ++v lLle gad  a+ +++G+t+ 
  KOO20798.1  84 RCVVLLLEAGADKTAR-DAQGRTPA 107
                 5899************.******85 PP

  == domain 3  score: 8.0 bits;  conditional E-value: 0.0012
       Ank_4  25 adinaqdnrsGetalhiAakrgnveilklLl 55 
                 +++n +d++ ++ +lh Aa rg   ++ lL+
  KOO20798.1 172 ISVNLRDPDGDRFPLHWAAARGLRTCVNLLI 202
                 45999*9998888*********888888776 PP

  == domain 4  score: 17.3 bits;  conditional E-value: 1.5e-06
       Ank_4   4 aLhyaaisgrlelvrlLlekgadinaqdnrsGetalhiAakrgnveilklL 54 
                 +Lh+aa+ g   +v lL++ ga i a  +++G+ta   A ++++  + +lL
  KOO20798.1 185 PLHWAAARGLRTCVNLLIDAGAHIGAL-DADGNTAAGLAMRFNQRAVHELL 234
                 69*******999**************9.***********999998776666 PP

  == domain 5  score: 3.6 bits;  conditional E-value: 0.03
       Ank_4   9 aisgrlelvr.lLlekgadinaq...dnrsGeta 38 
                 a+ ++ ++v+ lLl+  +d+n+q   +++sG ta
  KOO20798.1 222 AMRFNQRAVHeLLLQAIVDVNYQtnvSPKSGATA 255
                 67888899994555778******66666778776 PP

>> Ank_3  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.0   4.5e-06     0.016       3      28 ..      71      95 ..      69      98 .. 0.92
   2 ?    3.5   0.0     0.042   1.5e+02       2      30 ..     103     129 ..     102     130 .. 0.88
   3 !   12.0   0.1     7e-05      0.25       5      29 ..     185     208 ..     182     210 .. 0.91
   4 !    7.5   0.0     0.002       7.3       1      30 [.     214     242 ..     214     242 .. 0.86

  Alignments for each domain:
  == domain 1  score: 15.7 bits;  conditional E-value: 4.5e-06
       Ank_3  3 etpLhlAarsgnleivkfLlenkgad 28
                +tpLh+Aa  g    v +Lle  gad
  KOO20798.1 71 RTPLHWAAARGFRRCVVLLLE-AGAD 95
                8************99999999.8998 PP

  == domain 2  score: 3.5 bits;  conditional E-value: 0.042
       Ank_3   2 GetpLhlAarsgnleivkfLlenkgadvn 30 
                 G+tp  lA+ ++ +e +  +++ +g++++
  KOO20798.1 103 GRTPAELALDCDQFE-IGDIIK-YGPPID 129
                 9*************9.888888.888775 PP

  == domain 3  score: 12.0 bits;  conditional E-value: 7e-05
       Ank_3   5 pLhlAarsgnleivkfLlenkgadv 29 
                 pLh+Aa  g  + v +L++  ga +
  KOO20798.1 185 PLHWAAARGLRTCVNLLID-AGAHI 208
                 9******************.89987 PP

  == domain 4  score: 7.5 bits;  conditional E-value: 0.002
       Ank_3   1 nGetpLhlAarsgnleivkfLlenkgadvn 30 
                 +G+t+  lA+r++  + v+ Ll +  +dvn
  KOO20798.1 214 DGNTAAGLAMRFNQRA-VHELLLQAIVDVN 242
                 69*************9.7777766899998 PP

>> Ank  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.8   0.0   2.2e-07    0.0008       3      31 ..      71     100 ..      70     101 .. 0.90
   2 !   12.6   0.2   4.1e-05      0.15       5      31 ..     185     212 ..     183     213 .. 0.84
   3 ?    2.3   0.0     0.073   2.6e+02       1      32 []     214     246 ..     214     246 .. 0.67

  Alignments for each domain:
  == domain 1  score: 19.8 bits;  conditional E-value: 2.2e-07
                 BBHHHHHHHHTTHHHHHHHH.TTTSTTCBT CS
         Ank   3 nTPLHlAatngkkriiklLL.hGAnlnald 31 
                 +TPLH+Aa +g  r++ lLL  GA+ +a+d
  KOO20798.1  71 RTPLHWAAARGFRRCVVLLLeAGADKTARD 100
                 6*******778888******88***99998 PP

  == domain 2  score: 12.6 bits;  conditional E-value: 4.1e-05
                 HHHHHHHHTTHHHHHHHH.TTTSTTCBT CS
         Ank   5 PLHlAatngkkriiklLL.hGAnlnald 31 
                 PLH+Aa +g   ++ lL+  GA + ald
  KOO20798.1 185 PLHWAAARGLRTCVNLLIdAGAHIGALD 212
                 9****9667777******66**998887 PP

  == domain 3  score: 2.3 bits;  conditional E-value: 0.073
                 TSBBHHHHHHHHTTHHHHHHHHTT.TSTTCBTT CS
         Ank   1 dGnTPLHlAatngkkriiklLLhG.Anlnaldn 32 
                 dGnT+  lA ++++  + +lLL+   ++n ++n
  KOO20798.1 214 DGNTAAGLAMRFNQRAVHELLLQAiVDVNYQTN 246
                 677777777655554466677776779998886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (261 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       379  (0.0211389); expected 358.6 (0.02)
Passed bias filter:                      351  (0.0195772); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.39u 0.25s 00:00:00.64 Elapsed: 00:00:00.38
# Mc/sec: 2081.03
//
Query:       KOO20799.1  [L=924]
Description: leucyl-tRNA synthetase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.7e-63  213.7   0.3    1.9e-38  132.1   0.0    4.0  3  tRNA-synt_1    tRNA synthetases class I (I, L, M and V)
    1.2e-57  194.4   0.0    1.9e-57  193.8   0.0    1.3  1  tRNA-synt_1_2  Leucyl-tRNA synthetase, Domain 2
    1.2e-23   83.5   0.1    1.3e-15   57.1   0.0    3.3  4  tRNA-synt_1g   tRNA synthetases class I (M)
    5.1e-17   62.2   0.1    1.5e-16   60.8   0.1    1.7  1  Anticodon_1    Anticodon-binding domain of tRNA
    2.9e-05   23.6   0.0     0.0032   16.9   0.0    2.2  2  tRNA-synt_1e   tRNA synthetases class I (C) catalytic domain
  ------ inclusion threshold ------
       0.14   11.1   0.0        0.3   10.0   0.0    1.5  1  tRNA-synt_1f   tRNA synthetases class I (K)
       0.17   10.8   0.0       0.45    9.4   0.1    1.6  2  tRNA-synt_1d   tRNA synthetases class I (R)


Domain annotation for each model (and alignments):
>> tRNA-synt_1  tRNA synthetases class I (I, L, M and V)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  132.1   0.0   7.6e-42   1.9e-38       1     350 [.      85     499 ..      85     508 .. 0.86
   2 !   20.8   0.2   3.8e-08   9.8e-05     416     438 ..     509     531 ..     503     539 .. 0.85
   3 !   54.1   0.0   3.1e-18     8e-15     527     589 ..     656     717 ..     578     728 .. 0.79

  Alignments for each domain:
  == domain 1  score: 132.1 bits;  conditional E-value: 7.6e-42
  tRNA-synt_1   1 klyekWeeedvfkkelekekekkefilvdgPPyvtGs.lHiGhalaktlkdivirykrmkGkevlyvpGwDhaGlaieakvekklgakekkerkklgr 97 
                  k+++ W+e+d+f +  + e ++k+++l    Py  G+ lH+Gh    t  di+ ry rm  ++vl+ +GwD  Gl+ e++  ++ ++ e         
   KOO20799.1  85 KWQDYWDEHDTFATL-RREGKEKKYVLDMF-PYPSGAgLHVGHPEGYTASDIMARYWRMCDYDVLHPMGWDAFGLPAEQHAINTGTRPE--------- 171
                  58899********99.55555677877554.56555449*************************************9987555432333......... PP

  tRNA-synt_1  98 eefrekvrewkaeyaeeirkqvkrlGvsvDfdreylTldkeleeavkevfvrladkgliyrgkklvnwstklktalselEveykdkk........... 184
                          e  +  +++ ++q++ lG s+D++re  T d ++ + ++++f +l++k+l  +++  vnw+ +l t+l++ Ev    ++           
   KOO20799.1 172 --------ETTKANIANFKRQLRSLGFSYDWKRELATTDIGYVKWTQWIFLQLFKKDLAVQSEVRVNWCAELGTVLANEEVIDGKSErggfpvmrmpl 261
                  ........22333455678899***********************************************************76666669********* PP

  tRNA-synt_1 185 .......................................dalihvafpladkee...vklviaTTtPeTllgdtavavnpeldyv...........it 229
                                                         +   +++f++++ ++    ++ + TT+P Tl+g t  +++pe   +            +
   KOO20799.1 262 rqwvlriteyaeqlaadlategiewpegtmtmqktwigrSEGAEITFEVEGASAstpQTIDVFTTRPDTLMGATYAVIAPEHPLAaaqlaaadkggSD 359
                  *************************************99888999999976666556799*********************88879999999988777 PP

  tRNA-synt_1 230 keklilaeallkslvkkesekkiledergkeLegkevelplvnrkipiiaddyvdkeaGtGvVkiaPahdedDyevgkkynlevinilded.gtltee 326
                  + +   ++a +k+ + +++ ++ + +++     g++v++pl+++++p+ + dyv +  GtG+V   Pahde D+e +k +nl++++++  + g  + +
   KOO20799.1 360 DATAAALRAYVKAAAGRSDLDRSTAKVKSGVWSGLHVKHPLTGKALPLWVADYVLAGYGTGAVMAVPAHDERDFEFAKAFNLPIVQVVAPSvGAPSLD 457
                  7778888888999888887778889999999***************************************************8888887652222222 PP

  tRNA-synt_1 327 a..................aefeglkvfdarkkvveelkekg 350
                                     +  +gl+  da+ +++++l+  g
   KOO20799.1 458 FgaegaaaytelgvcvnsgEGLDGLSTLDAKTAMIAKLTTLG 499
                  245667777777777777788999999999999999998877 PP

  == domain 2  score: 20.8 bits;  conditional E-value: 3.8e-08
  tRNA-synt_1 416 iqdWciSRqrwWGhriplfvske 438
                   +dW++SRqr+WG++ip+++  +
   KOO20799.1 509 LRDWVFSRQRYWGEPIPIYFPVT 531
                  69*****************8655 PP

  == domain 3  score: 54.1 bits;  conditional E-value: 3.1e-18
  tRNA-synt_1 527 irgWvarlillslaltgsePfkevlvhglvrdeeGrKmSKslgNvidpldvikkygadalRlt 589
                   r+W + l  l+l +  +ePfk+++ +g+++ e+G KmSKs gNv++p+d++ +yg da+Rl+
   KOO20799.1 656 ARFWHKVLFDLGLVT-TKEPFKKLVHQGMILGEDGEKMSKSRGNVVNPDDIVMQYGGDAMRLY 717
                  589999999999865.568******************************************98 PP

>> tRNA-synt_1_2  Leucyl-tRNA synthetase, Domain 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  193.8   0.0   7.3e-61   1.9e-57       1     184 [.     295     495 ..     295     496 .. 0.91

  Alignments for each domain:
  == domain 1  score: 193.8 bits;  conditional E-value: 7.3e-61
  tRNA-synt_1_2   1 rnWIGrseGleiefkveese....eklevfttrpdtlfGvtfvalapehplvekl..........aekkkelaafieevkkksesereletkekeG 82 
                    + WIGrseG+ei+f+ve+ +    ++++vfttrpdtl+G+t+ ++apehpl+ +            ++ ++l+a+++ ++ +s+ +r+ + k k+G
     KOO20799.1 295 KTWIGRSEGAEITFEVEGASastpQTIDVFTTRPDTLMGATYAVIAPEHPLAAAQlaaadkggsdDATAAALRAYVKAAAGRSDLDRS-TAKVKSG 389
                    57***************98634445**************************98777888888877778899***************95.5667*** PP

  tRNA-synt_1_2  83 vftglkaihPitgekipiwvanyvlmeygtgavmavPahdqrDfeFakkynlpikqvikpedeekkle...eseeayteegilvnsg.efdglksk 174
                    v +gl++ hP+tg+ +p+wva+yvl++ygtgavmavPahd+rDfeFak +nlpi qv++p+ +  +l+   e  +ayte g++vnsg  +dgl++ 
     KOO20799.1 390 VWSGLHVKHPLTGKALPLWVADYVLAGYGTGAVMAVPAHDERDFEFAKAFNLPIVQVVAPSVGAPSLDfgaEGAAAYTELGVCVNSGeGLDGLSTL 485
                    *************************************************************99988774445889***********9569****** PP

  tRNA-synt_1_2 175 eakekiakkl 184
                    +ak+++++kl
     KOO20799.1 486 DAKTAMIAKL 495
                    ***9999876 PP

>> tRNA-synt_1g  tRNA synthetases class I (M)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.1       1.1   2.9e+03     267     280 ..      81      93 ..      73      99 .. 0.70
   2 !   57.1   0.0   4.9e-19   1.3e-15       7     135 ..     113     244 ..     107     252 .. 0.92
   3 ?   -2.1   0.0      0.49   1.3e+03     219     238 ..     506     525 ..     500     530 .. 0.87
   4 !   22.3   0.0   1.8e-08   4.7e-05     295     360 ..     659     724 ..     654     739 .. 0.85

  Alignments for each domain:
  == domain 1  score: -3.3 bits;  conditional E-value: 1.1
                   TTSGGGG.G--S.. CS
  tRNA-synt_1g 267 geeekwkeyWakdk 280
                   + e kw+ yW++ +
    KOO20799.1  81 TIEPKWQDYWDE-H 93 
                   45779*****44.3 PP

  == domain 2  score: 57.1 bits;  conditional E-value: 4.9e-19
                   -B--SS-.--HHHHHHHHHHHHHHHHHHHTT-EEEEEEEE---SHHHHHHHHHTTS-HHHHHHHHHHHHHHHHHHTT---SEEE..ETTSHHHHHHH CS
  tRNA-synt_1g   7 lpYangk.lHlGhllevisaDifaRykrlrgeevlfvcgtDehGtpielkAekegvtpeelvekvheeikelfkklnisfdkyg..rttseehkelv 100
                   +pY++g+ lH+Gh   + ++Di+aRy r+++++vl+  g D++G p e++A + g+ pee ++ + +++k+++++l+ s+d      tt+    + +
    KOO20799.1 113 FPYPSGAgLHVGHPEGYTASDIMARYWRMCDYDVLHPMGWDAFGLPAEQHAINTGTRPEETTKANIANFKRQLRSLGFSYDWKRelATTDIGYVKWT 209
                   799998658***********************************************************************96542258999999*** PP

                   HHHHHHHHHTT-EEEEEEEEEEETTTTEEE-GGG- CS
  tRNA-synt_1g 101 qeifkklkekgliyekeieqlycpkderflpdryv 135
                   q if +l +k+l  ++e+++ +c + ++ l++++v
    KOO20799.1 210 QWIFLQLFKKDLAVQSEVRVNWCAELGTVLANEEV 244
                   ******************************98875 PP

  == domain 3  score: -2.1 bits;  conditional E-value: 0.49
                   HT----EE-ESS-SSS-EET CS
  tRNA-synt_1g 219 kegLkdlaisrdldwGipvP 238
                      L+d+  sr+  wG p+P
    KOO20799.1 506 TYKLRDWVFSRQRYWGEPIP 525
                   5679************9999 PP

  == domain 4  score: 22.3 bits;  conditional E-value: 1.8e-08
                   HHHTHHHHHHHHTT----S-EEEE--EEE--------------HHHHHHHH-HHHHHHHHHHHS-T CS
  tRNA-synt_1g 295 FHtifwPaillgaelklpkkvvaheyltvegkKlSkSrgvvvkakealerldadllRYylaaeape 360
                   +H +++   l  ++  + k v+    l  +g+K+SkSrg+vv +++++ ++  d++R y +  +p 
    KOO20799.1 659 WHKVLFDLGLVTTKEPFKKLVHQGMILGEDGEKMSKSRGNVVNPDDIVMQYGGDAMRLYEMFMGPL 724
                   577778777888888888888888888999***************************998877665 PP

>> Anticodon_1  Anticodon-binding domain of tRNA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.8   0.1   5.7e-20   1.5e-16       8     149 ..     774     886 ..     770     889 .. 0.84

  Alignments for each domain:
  == domain 1  score: 60.8 bits;  conditional E-value: 5.7e-20
  Anticodon_1   8 lnklvkevteayeeyrfnkaasalyeffwndlcdwylelvkprlysesaedkraaqevllevletllrllaPfmPfitEelwqreeeelgkkesimla 105
                  ++++v++vt ++e ++fn+a+s+++ f     +++   l++p                  e+l +l+ llaPf P+++Ee+wq   ++lg++es++ a
   KOO20799.1 774 MHQTVRKVTLDIEAMSFNTAISQMMVF-----SNHLQSLSTPPP---------------TEALTKLTLLLAPFSPHLSEEIWQ---TLLGHPESVSFA 848
                  69***********************97.....666677777764...............589********************6...788********* PP

  Anticodon_1 106 ewpekaeelekel.eeeevellkeivkairklrselkikpsselk 149
                   wp ++   ++++ e + v+l    v++++k+rse+++ + ++++
   KOO20799.1 849 TWP-TY---DEKMcEVTTVTL---GVQVNGKVRSEITLEKTADAD 886
                  ***.77...333322234555...8************99988765 PP

>> tRNA-synt_1e  tRNA synthetases class I (C) catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.3   0.0    0.0086        22      23      49 ..     121     147 ..     114     191 .. 0.93
   2 !   16.9   0.0   1.2e-06    0.0032     235     279 ..     672     717 ..     640     725 .. 0.89

  Alignments for each domain:
  == domain 1  score: 4.3 bits;  conditional E-value: 0.0086
                   -BHHHHHHHHHHHHHHHHHHHTT-EEE CS
  tRNA-synt_1e  23 shlGhaRslvafDilrrilqalgYdvq 49 
                    h+Gh   + a Di++r+ ++ +Ydv 
    KOO20799.1 121 LHVGHPEGYTASDIMARYWRMCDYDVL 147
                   6************************96 PP

  == domain 2  score: 16.9 bits;  conditional E-value: 1.2e-06
                   S--EEEEEEE--EE.ETTBE--TTTT---BHHHHHTTS-HHHHHHH CS
  tRNA-synt_1e 235 kqlvkyflhnghlk.iegekmsksLknfitikdvlkkfdprqlRll 279
                   k+  k  +h+g++   +gekmsks +n++   d++ ++ + ++Rl+
    KOO20799.1 672 KEPFKKLVHQGMILgEDGEKMSKSRGNVVNPDDIVMQYGGDAMRLY 717
                   56678899***9862579**************************97 PP

>> tRNA-synt_1f  tRNA synthetases class I (K)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   0.0   0.00012       0.3     273     309 ..     683     719 ..     670     754 .. 0.82

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.00012
  tRNA-synt_1f 273 lillkggekmssSkGnvltledwlevaepevlrflil 309
                   +il + gekms+S+Gnv+ ++d++  +  + +r++ +
    KOO20799.1 683 MILGEDGEKMSKSRGNVVNPDDIVMQYGGDAMRLYEM 719
                   78889999**************998887777777654 PP

>> tRNA-synt_1d  tRNA synthetases class I (R)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.0      0.98   2.5e+03      19      61 ..     105     147 ..      99     152 .. 0.74
   2 ?    9.4   0.1   0.00018      0.45     266     296 ..     679     707 ..     660     719 .. 0.83

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 0.98
                   T-EEEEE.----BTTS--BHHHHHHHHHHHHHHHHHHHCT-EEE CS
  tRNA-synt_1d  19 kkkvvvd.fssPniakemhvGhLrstiiGdavsrlleflGydvi 61 
                   +kk v+d f  P     +hvGh       d ++r + +  ydv+
    KOO20799.1 105 EKKYVLDmFPYPSG-AGLHVGHPEGYTASDIMARYWRMCDYDVL 147
                   44444442555554.479****9999999999999999999997 PP

  == domain 2  score: 9.4 bits;  conditional E-value: 0.00018
                   EEEEE--EE-TTSSBSBCSSSTC-BHHHHHH CS
  tRNA-synt_1d 266 ehanfGmvlgkdkkkfktrkGetvkLadlLd 296
                    h   Gm+lg+d++k++  +G++v+ +d++ 
    KOO20799.1 679 VH--QGMILGEDGEKMSKSRGNVVNPDDIVM 707
                   44..49*******************999975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (924 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       431  (0.0240393); expected 358.6 (0.02)
Passed bias filter:                      354  (0.0197445); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.70u 0.30s 00:00:01.00 Elapsed: 00:00:00.48
# Mc/sec: 5734.62
//
Query:       KOO20800.1  [L=98]
Description: conserved small protein, partial [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.4e-12   47.2   0.1    2.2e-12   46.5   0.1    1.3  1  DUF1242   Protein of unknown function (DUF1242)


Domain annotation for each model (and alignments):
>> DUF1242  Protein of unknown function (DUF1242)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.5   0.1   1.2e-16   2.2e-12       1      35 []      37      71 ..      37      71 .. 0.96

  Alignments for each domain:
  == domain 1  score: 46.5 bits;  conditional E-value: 1.2e-16
     DUF1242  1 LltVlLLlICTCTYvravfPslldrnksgfrGvfW 35
                +l+V+LL+IC +TY+r+++Ps++  +k g++G+ +
  KOO20800.1 37 FLIVILLFICASTYLRQQRPSMFVEKKPGLFGLVY 71
                699*****************************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (98 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       539  (0.030063); expected 358.6 (0.02)
Passed bias filter:                      329  (0.0183502); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.25s 00:00:00.63 Elapsed: 00:00:00.41
# Mc/sec: 709.00
//
Query:       KOO20801.1  [L=223]
Description: hypothetical protein Ctob_000195 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (223 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       211  (0.0117686); expected 358.6 (0.02)
Passed bias filter:                      189  (0.0105416); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.40u 0.27s 00:00:00.67 Elapsed: 00:00:00.42
# Mc/sec: 1592.22
//
Query:       KOO20802.1  [L=283]
Description: glucosamine-6-phosphate isomerase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.7e-20   73.2   0.0    4.1e-20   72.6   0.0    1.2  1  Glucosamine_iso  Glucosamine-6-phosphate isomerases/6-phospho


Domain annotation for each model (and alignments):
>> Glucosamine_iso  Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   72.6   0.0   2.3e-24   4.1e-20       2     218 ..       8     230 ..       7     241 .. 0.80

  Alignments for each domain:
  == domain 1  score: 72.6 bits;  conditional E-value: 2.3e-24
                      SHHHHHHHHHHHHHHHHHHHHH.HHS-EEEEE--SHCHHHHHHHHHCSG.GGGGS-GGGEEEEESEEES.S-TTSTT-HHHHHHHHTGGGS--- CS
  Glucosamine_iso   2 dkeelaealaarivealeeala.ergraslalsGGstpkalyealaeeeeaaaaldwskvhvflgDERf.VpaddpdsNaklareallskvkip 93 
                      ++ee+a+ +aa++v+++++    + +   l l  Gstp a y++l    + ++++++++v  f  DE + +p d+p+s +  + e+l+++++i+
       KOO20802.1   8 TPEEVADLVAAYVVKKINDFAPtAAKPYVLGLPTGSTPLACYKKLIGLYK-EQKVSFQHVVTFNMDEYCgLPRDHPESYHSFMWENLFRHIDIQ 100
                      6899***************886155779******************7664.559***************89*********************** PP

                      GGGEE-S-TTSSTHHHHHHHHHHHHHHHHCCSSSSSESEEEE---TTS-BTTB-TTCHHHH.......CSSSSEEEESSBS.....TSSS-EEE CS
  Glucosamine_iso  94 eanvhpikesaaeapeaaaaayeeelkellakelpvfDlvlLGmGpDGHtaSLFPgspele.......etdrlvvavedsp.....kpppeRit 175
                       +nv  ++ +a  +++ + ++yee++k++       + l l G+GpDGH+a   Pgs            +d++++     +      +   R+ 
       KOO20802.1 101 RQNVNILDGNAP-DLKVECDRYEEKIKSYG-----GIKLFLAGIGPDGHIAFNEPGSSLSSrtriktlAQDTIIANA---RffggdVTAVPRMA 185
                      *******97666.68************854.....599*************88888887433344333222222222...13344444466666 PP

                      E-H..HHHTTCSEEEEEEESHHHHHHHHHHHTT..TTTSGGGGH- CS
  Glucosamine_iso 176 lTl..pvlnsarevlflvaGeeKaealeevlsgedpeelPaalve 218
                      lT+   ++ +a+evl+l++G++Ka ale+ ++g  +++  a++++
       KOO20802.1 186 LTVgvGTVLDADEVLVLITGAHKAYALEKCIEGGVNHMFTASAIQ 230
                      66511679***********************97776666777665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (283 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       315  (0.0175693); expected 358.6 (0.02)
Passed bias filter:                      299  (0.0166769); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.25s 00:00:00.69 Elapsed: 00:00:00.42
# Mc/sec: 2018.95
//
Query:       KOO20803.1  [L=444]
Description: intraflagellar transport protein 57-like protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    7.2e-99  331.2   0.0      1e-98  330.7   0.0    1.2  1  IFT57            Intra-flagellar transport protein 57
    0.00047   20.3   1.1     0.0022   18.2   1.1    2.1  1  DUF948           Bacterial protein of unknown function (DUF94
    0.00085   19.2   2.2    0.00085   19.2   2.2    2.6  4  Transcrip_act    Transcriptional activator
  ------ inclusion threshold ------
      0.012   16.1   3.6      0.022   15.2   2.5    2.1  1  NPV_P10          Nucleopolyhedrovirus P10 protein
      0.021   15.3   2.2      0.021   15.3   2.2    1.9  1  DUF16            Protein of unknown function DUF16
      0.023   14.7   0.8      0.098   12.7   0.8    2.1  1  THP2             Tho complex subunit THP2
      0.023   15.1   5.4      0.023   15.1   5.4    3.0  4  CENP-H           Centromere protein H (CENP-H)
       0.03   14.7   5.9      0.033   14.6   2.7    2.6  2  Snapin_Pallidin  Snapin/Pallidin
      0.044   14.2   0.2       0.21   12.1   0.4    2.1  2  DUF3037          Protein of unknown function (DUF3037)
       0.06   13.3   2.8       0.86    9.6   0.5    2.4  2  DUF1043          Protein of unknown function (DUF1043)
       0.11   10.8   2.3       0.15   10.3   2.3    1.2  1  SpecificRecomb   Site-specific recombinase
       0.12   11.9   7.6      0.087   12.4   5.6    1.7  1  Phage_GPO        Phage capsid scaffolding protein (GPO) serin
       0.14   11.0   8.7       0.24   10.3   8.7    1.4  1  Spc7             Spc7 kinetochore protein
       0.14   12.1   3.6       0.51   10.2   3.8    1.8  1  Sec34            Sec34-like family
        0.3   10.6   5.3       0.47   10.0   5.3    1.3  1  Exonuc_VII_L     Exonuclease VII, large subunit
       0.31   10.9   2.0        1.4    8.8   0.3    3.0  3  DASH_Dam1        DASH complex subunit Dam1
       0.35   11.3   8.0       0.47   10.9   6.8    1.7  1  Fez1             Fez1
       0.49   10.8  11.1       0.13   12.6   3.2    3.2  3  Syntaxin_2       Syntaxin-like protein
       0.73    9.9   7.4       0.75    9.9   5.9    1.8  1  UPF0242          Uncharacterised protein family (UPF0242) N-t
       0.95    9.8   7.3       0.13   12.7   2.6    2.0  1  YlqD             YlqD protein
        1.4    9.7   6.1        6.4    7.5   6.1    2.2  1  FliD_N           Flagellar hook-associated protein 2 N-termin
        1.5    9.1   7.8       0.45   10.8   2.8    2.5  2  KxDL             Uncharacterized conserved protein
          4    7.5   8.0        1.1    9.3   3.3    2.3  2  DUF1664          Protein of unknown function (DUF1664)
        8.6    7.0  15.7        7.4    7.3   7.3    3.1  3  HIP1_clath_bdg   Clathrin-binding domain of Huntingtin-intera


Domain annotation for each model (and alignments):
>> IFT57  Intra-flagellar transport protein 57
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  330.7   0.0  1.4e-101     1e-98       1     362 []      63     409 ..      63     409 .. 0.94

  Alignments for each domain:
  == domain 1  score: 330.7 bits;  conditional E-value: 1.4e-101
       IFT57   1 MedlleKLklLnyekeflkklklkplsryyFalekstnpgeqFylFtslaaWLlkkagkkfeapqeyDdpnatisnildelkklgvkvdfppskLkqGy 99 
                 Me++le+Lk+ nye+ +  + ++kpl+ +yFal  s np eqF++F+++++W ++++g + +ap+++Ddpn+t+s+++++l+++g ++++pp+kLkqGy
  KOO20803.1  63 MEEILERLKMHNYERGM--PGSFKPLTHTYFALA-SGNPAEQFHYFCAVCSWVMSLQGIHWRAPSQMDDPNSTVSDLFSQLQQIGAPTNYPPQKLKQGY 158
                 9*************875..667**********95.9**********************99*************************************** PP

       IFT57 100 GeevcyvLdeLadeaLkkkkfkfkkpkypkeeeeeeeeeveddaelelekveeeelikseeededeedeeeelklesekkeekekekeeeiieskvdaa 198
                 G+++c+vL+ L+d  L     +fk+ +y  ee++ ee++v++dae++++++ +e  +      + eede   +   +  +  +  +  ++i+ ++vd+a
  KOO20803.1 159 GDNCCAVLKHLLDA-LP---LEFKRAEYA-EEDAYEEAAVDEDAEVDADEMADEVGAA-----DVEEDEF--FGGGDGFDGAAMAKLTDSILDATVDPA 245
                 ***********995.44...4599*****.889999******************9973.....3333332..23334444456677789********** PP

       IFT57 199 eWklEleRvlpqLkvtikadakdWrahleqmkkhkksieeslpetksqlkklhedisktlekiesrEkylnsqleellqeyreaqeelsevkekykqls 297
                 +W++EleRv+p Lk++i +d k+Wr++l ++k+h++ +++  pet  +l++l+ed+++t++ + + E+ lnsq ++ ++e++++qe+l+ev++ ++  s
  KOO20803.1 246 AWQIELERVTPLLKMQILSDPKEWRNRLVNTKSHQERVAALAPETYVMLDRLSEDMERTVQAVRKSEQKLNSQCKDAVDEFSQNQEKLQEVQDAFNAKS 344
                 *************************************************************************************************** PP

       IFT57 298 egvseltrelaeiseelekvkqemeergssmtDgsplvkikkaltklkkEikqmdvrigVlqhtl 362
                 e + elt++l+++s+el ++k +m+erg+smtD+spl+kik al++lk E k+mdvrigV+ htl
  KOO20803.1 345 EAIAELTNTLSTVSDELGAIKGKMDERGTSMTDTSPLIKIKSALARLKDERKNMDVRIGVVTHTL 409
                 ***************************************************************97 PP

>> DUF948  Bacterial protein of unknown function (DUF948)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.2   1.1     3e-06    0.0022      24      84 ..     301     361 ..     284     365 .. 0.91

  Alignments for each domain:
  == domain 1  score: 18.2 bits;  conditional E-value: 3e-06
      DUF948  24 lkktldeaaatieelekqvdpilkevedllakvnelledvneklekvdplteavadlgesv 84 
                 +++t+++++++ ++l++q +  ++e  +  +k +e+++  n k+e++ +lt+ + ++++ +
  KOO20803.1 301 MERTVQAVRKSEQKLNSQCKDAVDEFSQNQEKLQEVQDAFNAKSEAIAELTNTLSTVSDEL 361
                 589******************************************************9876 PP

>> Transcrip_act  Transcriptional activator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.1       5.1   3.8e+03      28      44 ..      57      73 ..      31      77 .. 0.60
   2 ?   -2.0   0.2         4     3e+03      55      82 ..     182     209 ..     177     212 .. 0.84
   3 !   19.2   2.2   1.1e-06   0.00085      67     133 ..     291     357 ..     267     376 .. 0.83
   4 ?   -2.0   0.0       3.9   2.9e+03      28      47 ..     388     402 ..     362     426 .. 0.62

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 5.1
  Transcrip_act 28 lsafkakeeeierkkle 44
                      f+  ee +er k+ 
     KOO20803.1 57 HVPFQLMEEILERLKMH 73
                   34578888888888876 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 4
  Transcrip_act  55 rveeetkrLaeireeLealadPlrkeva 82 
                     +ee++   a + e+ e+ ad +  ev 
     KOO20803.1 182 YAEEDAYEEAAVDEDAEVDADEMADEVG 209
                    6899999999999999999999999986 PP

  == domain 3  score: 19.2 bits;  conditional E-value: 1.1e-06
  Transcrip_act  67 reeLealadPlrkevavvrkkidavnrelkplgqscqkkekeykealeafneknkekaqlvskLmel 133
                       L+ l++ + + v++vrk   ++n + k    ++ + +   +e+ +afn k++  a+l ++L  +
     KOO20803.1 291 YVMLDRLSEDMERTVQAVRKSEQKLNSQCKDAVDEFSQNQEKLQEVQDAFNAKSEAIAELTNTLSTV 357
                    4458889999*********************99999999999********************99765 PP

  == domain 4  score: -2.0 bits;  conditional E-value: 3.9
  Transcrip_act  28 lsafkakeeeierkklevre 47 
                    l+++k      erk ++vr 
     KOO20803.1 388 LARLKD-----ERKNMDVRI 402
                    333332.....556666654 PP

>> NPV_P10  Nucleopolyhedrovirus P10 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.2   2.5     3e-05     0.022      11      66 ..     306     362 ..     301     380 .. 0.89

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 3e-05
     NPV_P10  11 adikavddkVda.lqqqvddvqenlpdvtelnekLdaqsaqLaeletkvenIqdiLn 66 
                 +++++ ++k+++  +++vd+ ++n ++++e+++ ++a s+++ael +++++++d L 
  KOO20803.1 306 QAVRKSEQKLNSqCKDAVDEFSQNQEKLQEVQDAFNAKSEAIAELTNTLSTVSDELG 362
                 67888888886437899**********************************999775 PP

>> DUF16  Protein of unknown function DUF16
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.3   2.2   2.9e-05     0.021      16     101 ..     288     370 ..     276     373 .. 0.86

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 2.9e-05
                 XTTB-BHHHHHHB-..BHHHHHHHHHHHH...HHHHHHHHHHHHHHHHHHHHHHHHHHHHH.......HHHHHHHHHHHHHHHHHH CS
       DUF16  16 kteYVTrkqlnefkdsnkqrLkkieakvdklgeqinkleqkvekqgekikelkveqkaqgeelnkvdetleliletLqkinkRlDs 101
                 ++ YV    l e  + + q ++k+e+k++    q +   ++ ++ +ek++e +   +a++e++ ++ +tl  + + L +i+ ++D+
  KOO20803.1 288 PETYVMLDRLSEDMERTVQAVRKSEQKLN---SQCKDAVDEFSQNQEKLQEVQDAFNAKSEAIAELTNTLSTVSDELGAIKGKMDE 370
                 47788888888888889999999999999...66777788888889999*******************************999996 PP

>> THP2  Tho complex subunit THP2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.8   0.00013     0.098       6      71 ..     293     365 ..     290     400 .. 0.78

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 0.00013
        THP2   6 LlerlsvdLakqveisdeevsei......vvddekpp.kelqeilekyeeesedaeelraklekYldeiKmer 71 
                 +l+rls d+ ++v+   ++++++      +vd+ +++ ++lqe+ ++++++se ++el + l++  de+ + +
  KOO20803.1 293 MLDRLSEDMERTVQAVRKSEQKLnsqckdAVDEFSQNqEKLQEVQDAFNAKSEAIAELTNTLSTVSDELGAIK 365
                 799******9988876665554312222268987765267********************9998888776555 PP

>> CENP-H  Centromere protein H (CENP-H)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.3   0.0       1.2   9.3e+02      19      60 ..      35      76 ..      29      89 .. 0.80
   2 ?   15.1   5.4   3.1e-05     0.023       9      79 ..     295     365 ..     289     371 .. 0.87
   3 ?   -1.1   0.0       3.3   2.4e+03      67      94 ..     383     410 ..     366     414 .. 0.66
   4 ?   -0.8   0.3       2.7     2e+03      72      94 ..     388     410 ..     381     435 .. 0.44

  Alignments for each domain:
  == domain 1  score: 0.3 bits;  conditional E-value: 1.2
      CENP-H 19 sqelrelqeeltevekenlrlkrknrelaaellelakekese 60
                +++ ++lq++ +e e+ n ++++   +l++e+le  k +++e
  KOO20803.1 35 ANAAATLQRKGQEGEVRNADAEHVPFQLMEEILERLKMHNYE 76
                567788999999999999999999999*****7665555554 PP

  == domain 2  score: 15.1 bits;  conditional E-value: 3.1e-05
      CENP-H   9 delssellklsqelrelqeeltevekenlrlkrknrelaaellelakekesekeklkeelekleaelkksr 79 
                 d+ls++++++ q++r+ +++l++  k++++   +n+e+++e++   ++k++   +l++ l+++  el + +
  KOO20803.1 295 DRLSEDMERTVQAVRKSEQKLNSQCKDAVDEFSQNQEKLQEVQDAFNAKSEAIAELTNTLSTVSDELGAIK 365
                 89****************************************76666666666888999998888887765 PP

  == domain 3  score: -1.1 bits;  conditional E-value: 3.3
      CENP-H  67 elekleaelkksrqrwrvvknvasaiiv 94 
                 +++++ a lk++r+++ v  +v+ + +v
  KOO20803.1 383 KIKSALARLKDERKNMDVRIGVVTHTLV 410
                 4666667777777777666666655555 PP

  == domain 4  score: -0.8 bits;  conditional E-value: 2.7
      CENP-H  72 eaelkksrqrwrvvknvasaiiv 94 
                  a lk++r+++ v  +v+ + +v
  KOO20803.1 388 LARLKDERKNMDVRIGVVTHTLV 410
                 33334444333333333333322 PP

>> Snapin_Pallidin  Snapin/Pallidin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.6   2.7   4.4e-05     0.033      11      87 ..     294     369 ..     284     371 .. 0.88
   2 ?   -1.0   0.0       3.2   2.4e+03      55      73 ..     381     399 ..     373     402 .. 0.69

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 4.4e-05
  Snapin_Pallidin  11 lepkldeldeklkelrqsQeeLleqldrlnekLkeleeaqeaevlpdlkeyakKLvnikkrmsslnerlqklkkRae 87 
                      l    ++++ +++++r+s ++L++q++   +++ +++e  + ev   ++   + ++++ + +s++++ l  +k +++
       KOO20803.1 294 LDRLSEDMERTVQAVRKSEQKLNSQCKDAVDEFSQNQEKLQ-EVQDAFNAKSEAIAELTNTLSTVSDELGAIKGKMD 369
                      5555578999************************9999888.9999999999****************999998876 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 3.2
  Snapin_Pallidin  55 lpdlkeyakKLvnikkrms 73 
                      l ++k+ +++L+  +k+m 
       KOO20803.1 381 LIKIKSALARLKDERKNMD 399
                      6677777777777777774 PP

>> DUF3037  Protein of unknown function (DUF3037)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.0       9.5   7.1e+03     101     116 ..     124     139 ..      92     140 .. 0.64
   2 ?   12.1   0.4   0.00027      0.21      33     104 ..     275     359 ..     263     369 .. 0.85

  Alignments for each domain:
  == domain 1  score: -2.6 bits;  conditional E-value: 9.5
     DUF3037 101 gltedpeaelerLfee 116
                 +  +dp++++ +Lf++
  KOO20803.1 124 SQMDDPNSTVSDLFSQ 139
                 4567999999999987 PP

  == domain 2  score: 12.1 bits;  conditional E-value: 0.00027
     DUF3037  33 rleldeaRlralfpel.............dlealeeelkaleeicegekaagpiakldlaerfrwltaprstviqtsevhtglte 104
                 +++ +++R+ al+pe               ++a+++  ++l+ +c+++ ++  +++++l+e+ + ++a+ +++  ++++  ++++
  KOO20803.1 275 NTKSHQERVAALAPETyvmldrlsedmerTVQAVRKSEQKLNSQCKDAVDEFSQNQEKLQEVQDAFNAKSEAIAELTNTLSTVSD 359
                 4555679******9999999999*999999***************9999988889999999999999999999888877666665 PP

>> DUF1043  Protein of unknown function (DUF1043)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   0.5    0.0012      0.86      17      79 ..     303     354 ..     278     380 .. 0.59
   2 ?    3.5   0.1      0.09        67      11      49 ..     402     440 ..     398     444 .] 0.88

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 0.0012
     DUF1043  17 rltnsklkkqkklekelekakaeleeqkqeledHfaqsaelLetlaedyqkLyqhlaksseeL 79 
                 r++           + + k++++l+ q ++  d f+q++e L++ ++ ++   + +a+ +++L
  KOO20803.1 303 RTV-----------QAVRKSEQKLNSQCKDAVDEFSQNQEKLQEVQDAFNAKSEAIAELTNTL 354
                 333...........3344444444444444444444444444444444444444444444444 PP

  == domain 2  score: 3.5 bits;  conditional E-value: 0.09
     DUF1043  11 iGalilrltnsklkkqkklekelekakaeleeqkqeled 49 
                 iG++++ l+ +klk+   +++e +kak+ + + +  ++d
  KOO20803.1 402 IGVVTHTLVAKKLKSDLYTKREAQKAKKSVMQSESYVND 440
                 99**************************99998887776 PP

>> SpecificRecomb  Site-specific recombinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   2.3    0.0002      0.15     141     254 ..     277     393 ..     230     434 .. 0.74

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.0002
  SpecificRecomb 141 klreellealevlsvqiaalglepelrrrlpeleeeespFlal.qrelealleayea...aledeeeaeedlkhlrvlldqcreavdrvrkhlee 231
                     k ++e ++al   ++ +    l++++ r  + ++++e+   ++ + +++++ +++e+    +++ ++++e+ ++l   l++ ++ +  ++ +++e
      KOO20803.1 277 KSHQERVAALAPETYVML-DRLSEDMERTVQAVRKSEQKLNSQcKDAVDEFSQNQEKlqeVQDAFNAKSEAIAELTNTLSTVSDELGAIKGKMDE 370
                     444444555544444333.567777777777777777777665234456666555554436666778899999999******************* PP

  SpecificRecomb 232 nGvsvslvfllerlrqrleRlee 254
                     +G+s++ +  l +++  l+Rl++
      KOO20803.1 371 RGTSMTDTSPLIKIKSALARLKD 393
                     ********************975 PP

>> Phage_GPO  Phage capsid scaffolding protein (GPO) serine peptidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   5.6   0.00012     0.087     141     253 ..     270     373 ..     258     382 .. 0.76

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 0.00012
   Phage_GPO 141 anplakrkqspenlftaavetalefeeeeeeeegeslferikallskkkksddarfadveeavelvAeevkelsekveallaleaelaalkkeveklka 239
                 +n l + k+++e + + a et + ++  +e+ e         + ++  +ks+++  +++++av+++ +++++l+e ++a +a+++++a+l++++++ ++
  KOO20803.1 270 RNRLVNTKSHQERVAALAPETYVMLDRLSEDME---------RTVQAVRKSEQKLNSQCKDAVDEFSQNQEKLQEVQDAFNAKSEAIAELTNTLSTVSD 359
                 567777777777777777777777776665555.........444445566666777888899999999999988888888999999999999999999 PP

   Phage_GPO 240 eleaLkekLsktda 253
                 el a+k k+++  +
  KOO20803.1 360 ELGAIKGKMDERGT 373
                 99999999988655 PP

>> Spc7  Spc7 kinetochore protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   8.7   0.00031      0.24     157     250 ..     293     382 ..     268     437 .. 0.53

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.00031
        Spc7 157 lLekqeeeldellpeleeekaeleeeleklqeaaeelesidkeeLeelreelaelkaeieekkkelaelqeqleeleekieelkeqkseleeei 250
                 +L++  e +++ ++++++ +++l+++ ++  +   e++  ++e+L+e+++++++ ++ i+e+ + l+++ ++l +++ k++e  ++++++   i
  KOO20803.1 293 MLDRLSEDMERTVQAVRKSEQKLNSQCKDAVD---EFS-QNQEKLQEVQDAFNAKSEAIAELTNTLSTVSDELGAIKGKMDERGTSMTDTSPLI 382
                 33444444444444444444444444433322...222.2455555555555555555555555555555555555555555555555444333 PP

>> Sec34  Sec34-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   3.8   0.00068      0.51       6      69 ..     277     341 ..     273     361 .. 0.82

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.00068
       Sec34   6 eskeeecdelleqtdealeqLe.eleekfksvsektsslheaceqlleeqkrleelaeeieekLk 69 
                 +s++e++ +l  +t  +l+ L+ ++e  +++v ++ ++l+++c++ ++e ++ +e  +e+++  +
  KOO20803.1 277 KSHQERVAALAPETYVMLDRLSeDMERTVQAVRKSEQKLNSQCKDAVDEFSQNQEKLQEVQDAFN 341
                 78999999999999999999963699999******************999999999999887654 PP

>> Exonuc_VII_L  Exonuclease VII, large subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   5.3   0.00063      0.47     154     248 ..     288     397 ..     249     437 .. 0.56

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.00063
  Exonuc_VII_L 154 r.......rlekaikrlleekkqrleklasrlkspeellerkrqrldeleerleralkkqlkkkrerleelkerl.k..................ek 224
                           rl++ ++r+++  ++  +kl+s++k++ + +++++++l+e+++ +++  ++++++ +++l++++++l                      
    KOO20803.1 288 PetyvmldRLSEDMERTVQAVRKSEQKLNSQCKDAVDEFSQNQEKLQEVQDAFNA-KSEAIAELTNTLSTVSDELgAikgkmdergtsmtdtsplI- 382
                   0333333377777777777777777777777777777777777777777777777.5666666666666666666444433332221111121111. PP

  Exonuc_VII_L 225 leekkerlkklkerlelleekker 248
                            k+k+ l++l++++++
    KOO20803.1 383 ---------KIKSALARLKDERKN 397
                   .........222222233333333 PP

>> DASH_Dam1  DASH complex subunit Dam1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.0       4.8   3.6e+03       7      25 ..     125     143 ..     124     145 .. 0.77
   2 ?    8.8   0.3    0.0019       1.4       8      37 ..     319     348 ..     312     358 .. 0.88
   3 ?   -1.7   0.0       3.5   2.6e+03       2      17 ..     385     400 ..     384     403 .. 0.81

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 4.8
   DASH_Dam1   7 eLaDsletLdknledLqqi 25 
                 ++ D  +t+++ +++Lqqi
  KOO20803.1 125 QMDDPNSTVSDLFSQLQQI 143
                 5667778888999999998 PP

  == domain 2  score: 8.8 bits;  conditional E-value: 0.0019
   DASH_Dam1   8 LaDsletLdknledLqqihesLsdfNeSFa 37 
                  +D+++++++n e+Lq+++++ +  +e+ a
  KOO20803.1 319 CKDAVDEFSQNQEKLQEVQDAFNAKSEAIA 348
                 58*******************999888877 PP

  == domain 3  score: -1.7 bits;  conditional E-value: 3.5
   DASH_Dam1   2 epafaeLaDsletLdk 17 
                 + a+a+L+D+ +++d 
  KOO20803.1 385 KSALARLKDERKNMDV 400
                 578999***9999886 PP

>> Fez1  Fez1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   6.8   0.00062      0.47      35     160 ..     314     434 ..     300     440 .. 0.69

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00062
        Fez1  35 alkaqlrelrakleekeeeikeleesleektlelevcenelqrkkseaellrekvekleeelkelreelselsleeeeaalesdeakaqrqeaeeleel 133
                 +l +q++++  + ++++e+++e++++++ k++ + ++ n l+  ++e   ++ k+++  + ++++   ++ +s   + a   +de +++ + +  + + 
  KOO20803.1 314 KLNSQCKDAVDEFSQNQEKLQEVQDAFNAKSEAIAELTNTLSTVSDELGAIKGKMDERGTSMTDTSPLIKIKS---ALA-RLKDE-RKNMDVRIGVVTH 407
                 68999************************************99999999999988888777777655333322...111.11122.1222223344444 PP

        Fez1 134 kreverlraeLkeerqkkeeqassFeq 160
                 +   ++l++ L ++r+++++++s  ++
  KOO20803.1 408 TLVAKKLKSDLYTKREAQKAKKSVMQS 434
                 445567777777777776666655555 PP

>> Syntaxin_2  Syntaxin-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.3   0.0       1.9   1.4e+03       9      27 ..     130     148 ..     124     158 .. 0.77
   2 ?   12.6   3.2   0.00017      0.13      35     100 ..     276     340 ..     259     341 .. 0.68
   3 ?    0.8   0.1      0.86   6.4e+02      16      44 ..     412     440 ..     406     444 .] 0.86

  Alignments for each domain:
  == domain 1  score: -0.3 bits;  conditional E-value: 1.9
  Syntaxin_2   9 nsnvstleklvkqLgtkkd 27 
                 ns vs l ++++q+g +++
  KOO20803.1 130 NSTVSDLFSQLQQIGAPTN 148
                 7788888889999998876 PP

  == domain 2  score: 12.6 bits;  conditional E-value: 0.00017
  Syntaxin_2  35 lhelieeinelikktnellkklsqldnsssdsqqklqkekLkkdfkealqeFqkiqrqyaekekqi 100
                  ++ +e++  l+ +t   l +ls++ + + + + + +++kL++++k+a+ eF + q++ +e + ++
  KOO20803.1 276 TKSHQERVAALAPETYVMLDRLSEDMERTVQ-AVRKSEQKLNSQCKDAVDEFSQNQEKLQEVQDAF 340
                 3455555555555555555666665555532.444469***********************99877 PP

  == domain 3  score: 0.8 bits;  conditional E-value: 0.86
  Syntaxin_2  16 eklvkqLgtkkdteelreklhelieeine 44 
                 +kl ++L tk++ ++ ++++ ++ +++n+
  KOO20803.1 412 KKLKSDLYTKREAQKAKKSVMQSESYVND 440
                 67888999**********99999999987 PP

>> UPF0242  Uncharacterised protein family (UPF0242) N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   5.9     0.001      0.75      95     160 ..     277     356 ..     247     377 .. 0.76

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.001
     UPF0242  95 qeeeeeLkee...........ldakeeelerlkeenqqLqekleaiae...dfeelkleleeqLaekqellqeyqetiee 160
                 ++ +e+ +              + +e++++  ++ +q+L+++ ++++    +++e ++e++++ + k e + e+ +t++ 
  KOO20803.1 277 KSHQERVAALapetyvmldrlSEDMERTVQAVRKSEQKLNSQCKDAVDefsQNQEKLQEVQDAFNAKSEAIAELTNTLST 356
                 3333333333444666655558899*********************9977778899999999999999999999988764 PP

>> YlqD  YlqD protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   2.6   0.00017      0.13      19      82 ..     295     357 ..     290     368 .. 0.87

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 0.00017
        YlqD  19 eelqqqlqaqieqldkelqqLefqakrlikeikkqsaqqieeiqeqvekekserlekkkqllqq 82 
                 ++l +++++ ++++ k  q+L+ q k +++e ++ ++++ +e+q+ ++++ + + e  + l   
  KOO20803.1 295 DRLSEDMERTVQAVRKSEQKLNSQCKDAVDEFSQ-NQEKLQEVQDAFNAKSEAIAELTNTLSTV 357
                 578999**************************75.788*************9999998888665 PP

>> FliD_N  Flagellar hook-associated protein 2 N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.5   6.1    0.0086       6.4      19      70 ..     322     378 ..     299     438 .. 0.69

  Alignments for each domain:
  == domain 1  score: 7.5 bits;  conditional E-value: 0.0086
                 XXXXXXXXXXXXXXXHHHHHHHHHHHHHHHHHH...H.HHXX.GGGGGXEEEEECST CS
      FliD_N  19 kldkleqkktklewkqsayrelnsklsnlksal...s.alsk.sstfsakkatssde 70 
                  +d++ q+++kl++ q+a+++ + ++++l ++l   s +l + +++++++ ++ +d+
  KOO20803.1 322 AVDEFSQNQEKLQEVQDAFNAKSEAIAELTNTLstvSdELGAiKGKMDERGTSMTDT 378
                 355666777777777777777777777777755222124444455555555555555 PP

>> KxDL  Uncharacterized conserved protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   2.8    0.0006      0.45       8      79 ..     298     369 ..     293     371 .. 0.91
   2 ?   -0.7   0.2       2.3   1.7e+03      51      65 ..     405     419 ..     388     434 .. 0.78

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.0006
        KxDL   8 sedldeilalQaqtsgrlnkknreLlelnalsqerlaklrarfkqgtkllkevkkdLesifkkirslkakla 79 
                 sed+++++++ ++  ++ln++ +   +   + qe+l+++++ f+ + +++ e+ + L ++   + ++k k+ 
  KOO20803.1 298 SEDMERTVQAVRKSEQKLNSQCKDAVDEFSQNQEKLQEVQDAFNAKSEAIAELTNTLSTVSDELGAIKGKMD 369
                 68999999999999999999998888888889************************************9986 PP

  == domain 2  score: -0.7 bits;  conditional E-value: 2.3
        KxDL  51 kqgtkllkevkkdLe 65 
                   +t ++k++k+dL 
  KOO20803.1 405 VTHTLVAKKLKSDLY 419
                 57899999****995 PP

>> DUF1664  Protein of unknown function (DUF1664)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3   3.3    0.0015       1.1      45     118 ..     296     369 ..     291     379 .. 0.65
   2 ?   -0.5   0.2       1.6   1.2e+03      51      96 ..     385     431 ..     373     440 .. 0.64

  Alignments for each domain:
  == domain 1  score: 9.3 bits;  conditional E-value: 0.0015
     DUF1664  45 svskqleqvseslaatkrhLssridrvdkkldeqkeiskeikeevtevredlseigedvesvkeavegleskle 118
                 ++s+++e+  +++++  ++L+s+ +   ++  +++e  +e+++  ++ +e ++e+ + +++v++    +++k++
  KOO20803.1 296 RLSEDMERTVQAVRKSEQKLNSQCKDAVDEFSQNQEKLQEVQDAFNAKSEAIAELTNTLSTVSDELGAIKGKMD 369
                 56777777777777777777777666666666666666666666666666666666666666666666555554 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 1.6
     DUF1664  51 eqvseslaatkrhLssridrvdkkldeqkeisk.eikeevtevredl 96 
                 ++  + l++ ++++  ri  v ++l + k  s   +k+e +++++ +
  KOO20803.1 385 KSALARLKDERKNMDVRIGVVTHTLVAKKLKSDlYTKREAQKAKKSV 431
                 45556777778888888888877776554433314555555555555 PP

>> HIP1_clath_bdg  Clathrin-binding domain of Huntingtin-interacting protein 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.3   7.3    0.0099       7.4      18      91 ..     276     356 ..     268     364 .. 0.56
   2 ?    3.5   0.5      0.14   1.1e+02      42      97 ..     335     396 ..     333     398 .. 0.72
   3 ?    3.5   1.1      0.15   1.1e+02      37      79 ..     389     436 ..     382     443 .. 0.61

  Alignments for each domain:
  == domain 1  score: 7.3 bits;  conditional E-value: 0.0099
  HIP1_clath_bdg  18 arqaqeeverekkeleeelerlkeeaerkleeqkeelekLkr.......eleakraelarlkssLesseqsgeqlssqlaa 91 
                     ++ +qe v++   e+   l+rl+e+ er ++  ++  +kL++       e+ +++++l++++ + + + ++ ++l+++l++
      KOO20803.1 276 TKSHQERVAALAPETYVMLDRLSEDMERTVQAVRKSEQKLNSqckdavdEFSQNQEKLQEVQDAFNAKSEAIAELTNTLST 356
                     566666666666666666666666666666655555555555000000055555555666666666666666666666555 PP

  == domain 2  score: 3.5 bits;  conditional E-value: 0.14
  HIP1_clath_bdg  42 eaerkleeqkeelekLkreleakraelarlkssLesseqsge......qlssqlaaLqaEke 97 
                     e +   + ++e + +L + l + ++el  +k+ ++++ +s +      +++s la L+ E++
      KOO20803.1 335 EVQDAFNAKSEAIAELTNTLSTVSDELGAIKGKMDERGTSMTdtspliKIKSALARLKDERK 396
                     56667788888999999999999999999999998877776622222245678888888876 PP

  == domain 3  score: 3.5 bits;  conditional E-value: 0.15
  HIP1_clath_bdg  37 erlkeeaerkle.....eqkeelekLkreleakraelarlkssLesse 79 
                      rlk+e++++         +   +kLk++l +kr+  +  ks ++s+ 
      KOO20803.1 389 ARLKDERKNMDVrigvvTHTLVAKKLKSDLYTKREAQKAKKSVMQSES 436
                     555555444332344557788899******998755555455555544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (444 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1729  (0.0964359); expected 358.6 (0.02)
Passed bias filter:                      820  (0.045736); expected 358.6 (0.02)
Passed Vit filter:                       132  (0.00736237); expected 17.9 (0.001)
Passed Fwd filter:                        25  (0.00139439); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              24  [number of targets reported over threshold]
# CPU time: 0.72u 0.31s 00:00:01.03 Elapsed: 00:00:00.47
# Mc/sec: 2812.36
//
Query:       KOO20804.1  [L=271]
Description: hypothetical protein Ctob_000199 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
  ------ inclusion threshold ------
      0.014   15.2   0.0      0.024   14.5   0.0    1.3  1  Activator-TraM  Transcriptional activator TraM


Domain annotation for each model (and alignments):
>> Activator-TraM  Transcriptional activator TraM
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.5   0.0   1.4e-06     0.024      56     120 ..      75     140 ..      62     155 .. 0.86

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 1.4e-06
  Activator-TraM  56 aiasrWgddakekaervln.aalaaskealvkllqegakeaaevvrkeveaalarlkssirearrv 120
                     +i +r +dd  +  +r  n  a+ a k+alv l q+   ++++++r ev+   ++++ +++e   +
      KOO20804.1  75 TIGQRTKDDVPDECDRAQNeKAMKAWKDALVSLQQNPKIATVSLMRDEVDRQFSQFHRFAEEGSEF 140
                     5789*************994599*********9999999******************999887665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (271 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       345  (0.0192426); expected 358.6 (0.02)
Passed bias filter:                      309  (0.0172346); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.24s 00:00:00.67 Elapsed: 00:00:00.40
# Mc/sec: 2022.36
//
Query:       KOO20805.1  [L=1585]
Description: transient receptor potential cation channel subfamily m member 1-like protein, partial [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.8e-23   82.2   0.0    5.5e-17   62.0   0.0    2.3  2  LSDAT_euk   SLOG in TRPM
    2.2e-08   33.6  15.7     0.0014   17.9  13.3    2.2  2  Ion_trans   Ion transport protein
    1.2e-06   27.9   0.0     0.0073   15.6   0.1    2.5  2  LSDAT_prok  SLOG in TRPM, prokaryote
    0.00013   21.9   2.0    0.00046   20.2   2.0    2.0  1  WW          WW domain


Domain annotation for each model (and alignments):
>> LSDAT_euk  SLOG in TRPM
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.0   0.0   1.2e-20   5.5e-17       6     117 ..     146     270 ..     137     284 .. 0.83
   2 !   17.6   0.0   4.5e-07     0.002     130     231 ..     320     435 ..     299     452 .. 0.71

  Alignments for each domain:
  == domain 1  score: 62.0 bits;  conditional E-value: 1.2e-20
   LSDAT_euk   6 lsvdtkpedilkllekewklelPkLvisvhGGakn.FelqpklkkvlrkGLlkaaktT...........gA..WiiTgGvntGvvrhvgdalkelssks 90 
                 ++ +++ ++++++ +++w+l +P+ +isv+GG++    l++k k ++++GL++a+++            gA  WiiTgG+++Gv+  +g ++++  + +
  KOO20805.1 146 VDDEDELKNLINFCMQHWRLRQPSVIISVTGGTNPgAGLTEKQKVLFKRGLTEAVTRAclcdeadedddGAvpWIITGGTRAGVMELIGMVMSQD-ELA 243
                 455678899***********************986267***************99874333333333323477*****************99987.557 PP

   LSDAT_euk  91 krkvvtiGiapwGivenkedligkdvv 117
                 +  ++ iGiap+Gi++++++++g++  
  KOO20805.1 244 SLPIPCIGIAPYGIINQRDEFMGRQFR 270
                 788999*****************9875 PP

  == domain 2  score: 17.6 bits;  conditional E-value: 4.5e-07
   LSDAT_euk 130 lavlnsnHshFllvDd.....Gt..vgk..ygaeiklRrklEkaiskqki.atrtkqgvp...vvcvvveGGpntiktvleyvrespkvPvvvvdgsGr 215
                  + l+  H+hFllvD+     G   +gk  +g+e ++R ++E++   +     + + ++p   +v + + GGp t ++++ ++ +  +v  +v d  G 
  KOO20805.1 320 EVLLDWGHTHFLLVDSrdpqtGEtlTGKraFGTERQFRVQFERQTCDTVYgSDKDGDKLPrpaLVLIALGGGPGTFEVIHRTLAARRPVMCFVGDENGG 418
                 4678999********6444333212232349***********98765433133344445433489999*****************88888899999999 PP

   LSDAT_euk 216 aaD.llafahklleeeg 231
                 a+  +  +++k  +eeg
  KOO20805.1 419 ASKaVYEYVFKAGAEEG 435
                 98624456666665555 PP

>> Ion_trans  Ion transport protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.9  13.3   3.1e-07    0.0014      27     149 ..    1014    1197 ..     990    1207 .. 0.72
   2 !   15.9   0.0   1.3e-06    0.0057     208     244 ..    1241    1277 ..    1216    1278 .. 0.86

  Alignments for each domain:
  == domain 1  score: 17.9 bits;  conditional E-value: 3.1e-07
                  S..................HHHHC.HHHHHHHHHHHHHHHHHHHHHHHH..HTHHHHHHHCHSHHHHHHHHHHHHHHHHH..............HHH CS
   Ion_trans   27 e..................delek.tileilelvftaiftlemllkila..lgllikkrYlrdpwnilDflvvlpsllsl..............vls 88  
                                        ++ +++ei+++v+t++ + e l ++la   gl     Y+++  n++D+l  + +++++                 
  KOO20805.1 1014 LnlcgwpwqaaswmfragsMGADEiQVWEIVNWVWTGFKIAEELEQLLAvpGGL---EDYFSNVYNWIDVLTYSSIMFVIaiklalkyslpyymA-- 1105
                  33333446666665655543333369***********************88899...****************9999988667766666666551.. PP

                  H..............................HHHHHHHHHHHH.GGGGGGHHHCHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
   Ion_trans   89 e..............................esllllsvlrlf.rvlrllklisrleglrtlvtalirsvkdllnvlllllvvlfifaligv 149 
                                                 + l++l+vl l  r++ ++k+ ++++ l ++v  ++ s+ + + +++ + + +++f+ i++
  KOO20805.1 1106 AttfaswrllvsgdppagdlvywtaflvnciQLLYALAVLLLTvRFINAMKMDRSVGCLIIIVGQMVPSIISWIGLMMCWTLGFSAFFAIVM 1197
                  14555666777777888888888899998998888888888888999999999999999996665555555555566666666666665554 PP

  == domain 2  score: 15.9 bits;  conditional E-value: 1.3e-06
                  HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
   Ion_trans  208 kvaliyfvifiilgsflllNlliaviadnfqeltere 244 
                   +  + + ++i++++++l+Nllia + d + e++e++
  KOO20805.1 1241 TLVPVAMYVYIFVATIVLINLLIAQMGDVYGEVKEKA 1277
                  556677899************************9975 PP

>> LSDAT_prok  SLOG in TRPM, prokaryote
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.1   1.6e-06    0.0073      40      77 ..     220     260 ..     170     275 .. 0.82
   2 !    9.6   0.0   0.00011       0.5      83     155 ..     315     413 ..     305     449 .. 0.78

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 1.6e-06
  LSDAT_prok  40 vidgGtdtGvmkllgraraa...veatfpLiGVApegtVal 77 
                 +i+gGt +Gvm+l+g+  ++   ++  +p iG+Ap g ++ 
  KOO20805.1 220 IITGGTRAGVMELIGMVMSQdelASLPIPCIGIAPYGIINQ 260
                 9***********98865443111566678*******98875 PP

  == domain 2  score: 9.6 bits;  conditional E-value: 0.00011
  LSDAT_prok  83 k.tkdeaeLephHthfvLvpg............erWGdEspwlarlatalaekk............psvt.vlvnGgeitlkdiresvkagrpilvvaG 155
                 k +++e+ L+ +Hthf+Lv+               +G+E ++ +++     ++             p+++ + ++Gg  t++ i   ++a+rp++   G
  KOO20805.1 315 KlPDGEVLLDWGHTHFLLVDSrdpqtgetltgkRAFGTERQFRVQFERQTCDTVygsdkdgdklprPALVlIALGGGPGTFEVIHRTLAARRPVMCFVG 413
                 23579999************999999999999889999988877765555522233345788899988887999*******************987666 PP

>> WW  WW domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.2   2.0     1e-07   0.00046       3      31 .]      14      42 ..      12      42 .. 0.96

  Alignments for each domain:
  == domain 1  score: 20.2 bits;  conditional E-value: 1e-07
                TTEEEEE-TTTT-EEEEETTT--EESS-- CS
          WW  3 pGWeeqwdpdsGrvYYyNheTgetqWekP 31
                ++W +++d+ +G +YYy    +e qWe+P
  KOO20805.1 14 DPWLTAKDEATGDTYYYKQYSQEVQWERP 42
                79**************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1585 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       721  (0.0402142); expected 358.6 (0.02)
Passed bias filter:                      495  (0.0276089); expected 358.6 (0.02)
Passed Vit filter:                        60  (0.00334653); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.96u 0.30s 00:00:01.26 Elapsed: 00:00:00.46
# Mc/sec: 10258.73
//
Query:       KOO20806.1  [L=341]
Description: NAD-dependent epimerase dehydratase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      1e-22   80.8   0.0    1.4e-22   80.4   0.0    1.1  1  Epimerase        NAD dependent epimerase/dehydratase family
    8.1e-14   51.3   0.0    1.2e-13   50.7   0.0    1.2  1  3Beta_HSD        3-beta hydroxysteroid dehydrogenase/isomeras
    2.9e-13   50.1   0.6      4e-13   49.6   0.6    1.3  1  NAD_binding_10   NAD(P)H-binding
    1.2e-10   41.4   0.0    1.7e-10   40.9   0.0    1.2  1  GDP_Man_Dehyd    GDP-mannose 4,6 dehydratase
    3.5e-07   30.0   1.2    5.5e-06   26.1   0.6    2.1  2  NmrA             NmrA-like family
    1.5e-06   27.6   0.8    0.00018   20.8   0.0    2.4  2  NAD_binding_4    Male sterility protein
  ------ inclusion threshold ------
      0.031   14.2   4.0      0.041   13.8   0.1    2.5  3  KR               KR domain
      0.041   13.0   2.6       0.49    9.5   2.6    2.3  1  Polysacc_synt_2  Polysaccharide biosynthesis protein


Domain annotation for each model (and alignments):
>> Epimerase  NAD dependent epimerase/dehydratase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   80.4   0.0   6.1e-26   1.4e-22       1     236 [.       8     239 ..       8     246 .. 0.80

  Alignments for each domain:
  == domain 1  score: 80.4 bits;  conditional E-value: 6.1e-26
                 EEEETTTSHHHHHHHHHHHHCTSEEEEEES-STTTTCHHCHHC...EEEE--TT-HHHHHHHHHHHT-SEEEE--S.---HHHHHHSHHHHHHHHTHHH CS
   Epimerase   1 ilVtGatGfiGsalvkallekgyevigldrlssasntarledl...elveldltdrsalerlfkeeqpdavihlAa.vggvaassedpadfieknlqgt 95 
                 +lVtG+tGfiGs++++  +  g  v g  r +     ++   +   elv++dl+d+s+ e + +  +++   h+A    g ++s ++    +++ ++gt
  KOO20806.1   8 VLVTGVTGFIGSHVARVAQLSGLAVRGTVRGTAHYGIEQA--VpgiELVNVDLLDSSEQELVDAMSGCTFLAHVASpFPGSDVSDSE----MKTAIEGT 100
                 79********************999999999555554444..3558**********9666555555999999998777777776666....677889** PP

                 HHHHHHHHHHTCTEEEEEEEGGGGTSCSS.......SSBSTCSTTS----SSHHHHHHHHHHHHHHHHHHHHT-EEEEEEESEEESTTS-TTS.TTSHH CS
   Epimerase  96 lnlleaarkagvkrllflsSsevYGkdae.......qpkeettltgplkpnspYaaaKlageklveayaaqyglnaiilrlfnlyGprngege.vsrvi 186
                  ++l aa+kagv r++  sS++  G +++        p ++    +p   +s Ya++K+ +ek ++a+aa+ gl+++++ ++ + Gp       ++   
  KOO20806.1 101 SKVLRAAKKAGVMRVVLTSSVAAIGGSPDkskgtaaNPYTSAD-WSPDSMQSSYAVSKTQAEKGAWALAAELGLKMTTIHPSFVQGPM---LLpRAPTS 195
                 ********************99999555422222222433332.3566999*************************************...44477788 PP

                 HHHHHHHHTTS.SSEEEETTST-EEEEEEHHHHHHHHHHHHHHHTT-STTE CS
   Epimerase 187 palirkilegk.qevtllgdgtalRdflyveDvaeaillvlehvdagdkge 236
                 +a++++ileg  + v  +g     +  + v Dvaea++ +l ++d+   ge
  KOO20806.1 196 TAMAKRILEGTmPAVPAIG-----MNVVGVVDVAEAHVKALLAHDTA--GE 239
                 89*********66666666.....66899**********99986664..44 PP

>> 3Beta_HSD  3-beta hydroxysteroid dehydrogenase/isomerase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.7   0.0   5.4e-17   1.2e-13       1     229 [.       9     231 ..       9     248 .. 0.77

  Alignments for each domain:
  == domain 1  score: 50.7 bits;  conditional E-value: 5.4e-17
   3Beta_HSD   1 vvtGgaGFlGralvkeLvrleelkevrvlDlrespelleelskvnvkkviegDvtd..kdkleealegvdvvihlaslvdvagkltedeimkvnvkGTr 97 
                 +vtG +GF+G+++ +      +l  + v   + ++      + v  ++++++D++d  +++l +a+ g   + h+a  ++  g + +d+ mk  ++GT 
  KOO20806.1   9 LVTGVTGFIGSHVARV----AQLSGLAVRGTVRGTAHYGIEQAVPGIELVNVDLLDssEQELVDAMSGCTFLAHVA--SPFPGSDVSDSEMKTAIEGTS 101
                 69*********98653....33444566666667777777778888889*****9833578999999999999995..567788889999********* PP

   3Beta_HSD  98 nvleacvkagvrvlvYtSsaevvgpnslgeeilngdEeleyesl...hqdaypesKalaEklvlkaNgrtlknggrlyTcaLRpagiyGegdkllvpll 193
                 +vl a++kagv ++v tSs+ ++g+   + + + ++  +  + +   +q+ y+ sK +aEk   +      + g ++ T  + p+ + G+      p+ 
  KOO20806.1 102 KVLRAAKKAGVMRVVLTSSVAAIGGSPDKSKGTAANPYTSADWSpdsMQSSYAVSKTQAEKGAWALAA---ELGLKMTT--IHPSFVQGPMLLPRAPTS 195
                 ************************966666666666655554434448999*********96544333...23435655..789999999888888888 PP

   3Beta_HSD 194 kqlaklglalfkigdeevlsdrvYvgNvawahilAa 229
                   +ak  l+    + + + ++ v v  va ah+ A 
  KOO20806.1 196 TAMAKRILEGTMPAVPAIGMNVVGVVDVAEAHVKAL 231
                 888888888888888888889999999999998876 PP

>> NAD_binding_10  NAD(P)H-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.6   0.6   1.8e-16     4e-13       1     146 [.      12     183 ..      12     235 .. 0.72

  Alignments for each domain:
  == domain 1  score: 49.6 bits;  conditional E-value: 1.8e-16
                     TTTSHHHHHHHHHHHHC-T-EEEEEETTHHHCHHHHCT.TTCEEEE--TT-..CCHHHHHHTT-SEEEES-....--TCCHHHH......HHHHH CS
  NAD_binding_10   1 GAtGkvGrllvkellargghevtalvRnpeklaeleae.eglevvegdvtd..vedlaealkgadaVvsal....ggggkdeeg......akniv 82 
                     G tG +G+++++ +  + g++v+  vR +++   +e++ +g+e+v +d++d  +++l +a++g+      +    g++ +d+e+      + +++
      KOO20806.1  12 GVTGFIGSHVARVAQLS-GLAVRGTVRGTAHYG-IEQAvPGIELVNVDLLDssEQELVDAMSGCTFLAHVAspfpGSDVSDSEMktaiegTSKVL 104
                     78**********99999.5*************8.77555**********9833589*********7766664445444446666777899***** PP

                     HHHHHCT--EEEEEEETTTTSGCGCH..........HHHHHHH.CCHHHHHHHHHHHH....HHHHSSSEEEEEEE-CE CS
  NAD_binding_10  83 daakeagvkRfvlvsaigvgdevpge..........fgewnke.llkaylaakraaee....llrasgldwTivrpggL 146
                     +aak+agv R+vl s++ +   +p++            +w  + + ++y+  k++ae+    l  + gl+ T ++p++ 
      KOO20806.1 105 RAAKKAGVMRVVLTSSVAAIGGSPDKskgtaanpytSADWSPDsMQSSYAVSKTQAEKgawaLAAELGLKMTTIHPSFV 183
                     ***************9776433232211222222223346665245666667777776322134446999999999875 PP

>> GDP_Man_Dehyd  GDP-mannose 4,6 dehydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.9   0.0   7.4e-14   1.7e-10       1     213 [.       9     211 ..       9     259 .. 0.75

  Alignments for each domain:
  == domain 1  score: 40.9 bits;  conditional E-value: 7.4e-14
                    EEETTTSHHHHHHHHHHHHCT-CCEEEEEEESS-TTHHHHHCTTT...TTGCCEEEEE--TT-HHHHHHHHHHHT-SEEEE--S---HHHHTTSHH CS
  GDP_Man_Dehyd   1 LiTGiaGfiGsylaelLlekgyevhgivrrsssfntgriehlakdpkeeleenlklhkgDltDssslerllaevqpdevynLAAqshVdvsfekPe 96 
                    L+TG++GfiGs++a+     g  v g+vr ++++    ie+          + ++l+++Dl Dss+ e + a   ++   + A   + +  ++  +
     KOO20806.1   9 LVTGVTGFIGSHVARVAQLSGLAVRGTVRGTAHYG---IEQAV--------PGIELVNVDLLDSSEQELVDAMSGCTFLAHVASP-FPGSDVS--D 90 
                    9***************************9999866...44432........4589********8876666666677777787765.3344343..4 PP

                    HHHHHHTHHHHHHHHHHHHCT..TTSEEEEEEE.GGGG-S-SSSSB-TTS----........-SHHHHHHHHHHHHHHHHHHHH---EEEEEE-EE CS
  GDP_Man_Dehyd  97 ytaevnvlGtlrLLeairalglekkvrfyqaSt.sEvYGkvqevpqtEttpfyP........rsPYaaaKlyadwivvnyreayglfavngilfnh 183
                      +++ + Gt ++L a++++g+   +r++ +S+ + + G++++++ t  +p++         +s Ya++K  a+  + +   + gl +++   +  
     KOO20806.1  91 SEMKTAIEGTSKVLRAAKKAGV---MRVVLTSSvAAIGGSPDKSKGTAANPYTSadwspdsmQSSYAVSKTQAEKGAWALAAELGLKMTTIHPSFV 183
                    5689999*************98...56666666255666777777777777764455556669****************************99999 PP

                    ESTTS-TTSCCCHHHHHHHHHHTTS-C-EE CS
  GDP_Man_Dehyd 184 esprrgetfvtrkitravarialgkqevly 213
                    ++p   ++ +t   t ++ ri++g  + + 
     KOO20806.1 184 QGPMLLPRAPTS--TAMAKRILEGTMPAVP 211
                    9*9999998876..4568889998876554 PP

>> NmrA  NmrA-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.1   0.6   2.5e-09   5.5e-06       1     101 [.       8     119 ..       8     135 .. 0.84
   2 ?    2.5   0.0      0.04        90     133     226 ..     172     262 ..     155     276 .. 0.71

  Alignments for each domain:
  == domain 1  score: 26.1 bits;  conditional E-value: 2.5e-09
                 EEESSTTSHHHHHHHHHHHHHT-EEEEEES-S-SHHHHHHHHSTTEEEES-TT-..HHHHHHHHTT-SEEEE---GG..........S-HHHHHHHHHH CS
        NmrA   1 IlviGaTGrqGksvvrallkaghkvralvRdtkselakslkeaGvelvkgdldd..keslvealkgvdvvfsvtgfy..........skeiedgkklvd 87 
                 +lv+G TG +G++v+r++  +g  vr  vR t +  +++ +  G elv+ dl d  ++ lv a++g      v + +          ++ ie  +k+ +
  KOO20806.1   8 VLVTGVTGFIGSHVARVAQLSGLAVRGTVRGTAHYGIEQ-AVPGIELVNVDLLDssEQELVDAMSGCTFLAHVASPFpgsdvsdsemKTAIEGTSKVLR 105
                 79******************************9999988.678*****99975422678999999988766655544689999998888899999**** PP

                 HHHHHS-SEEEEEE CS
        NmrA  88 AakeaGvkhfiySs 101
                 Aak+aGv +++  s
  KOO20806.1 106 AAKKAGVMRVVLTS 119
                 ******99998654 PP

  == domain 2  score: 2.5 bits;  conditional E-value: 0.04
                 TS-EEEEEE-EEGGG-BSSS-SS-BEEE-TTS.-EEEEESS-TTS-EE.-HHHHHHHHHHHHHHHHHHHTTEEEEE-SEEE-HHHHHHHHHHHHT CS
        NmrA 133 gipytfvyagffmenflsllaqlkvgdtappedkvtllgpgnpkavll.daeeDiGafvikilkdprklkgkriklagntlsgneivelfekkig 226
                 g+ +t + + f  + +l    +  +++ta  +  ++  +p+ p + ++ + + D++++ +k+l   +++ g+r+ +a   l ++e++ +++++ g
  KOO20806.1 172 GLKMTTIHPSFVQGPMLL---PRAPTSTAMAKRILEGTMPAVPAIGMNvVGVVDVAEAHVKALLAHDTA-GERLVVAAGNLLMTELAVAIKEAYG 262
                 555555555555544444...44446666666667778888888877788999*******999987776.5556666666667777777776665 PP

>> NAD_binding_4  Male sterility protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.1   0.1    0.0047        11       1      12 [.      10      21 ..      10      27 .. 0.90
   2 !   20.8   0.0     8e-08   0.00018      86     209 ..      71     192 ..      50     237 .. 0.76

  Alignments for each domain:
  == domain 1  score: 5.1 bits;  conditional E-value: 0.0047
                   EE-TTSHHHHHH CS
  NAD_binding_4  1 lTGaTGFLGkvL 12
                   +TG+TGF+G+++
     KOO20806.1 10 VTGVTGFIGSHV 21
                   7********997 PP

  == domain 2  score: 20.8 bits;  conditional E-value: 8e-08
                    HH--EEEE--SS-S.STTSSEEHHHHHHHHHHHHHHHTSSS--.-EEEEEE.GGGTTS-TTT--SSS-H......HHH--EEEETTTCCCHHHHHH CS
  NAD_binding_4  86 eevdviihsaAtvnfdepykellrvNveGtrevlelakklkklkvllhvST.ayvngeregeveekvyeegekeekldederaklkglpntYeqsK 180
                    + ++   h+a      +  +  +++ +eGt +vl+ akk      ++  S+ a++ g   +  +        ++   ++ +  + ++++  Y  sK
     KOO20806.1  71 SGCTFLAHVASPFPGSDVSDSEMKTAIEGTSKVLRAAKKAGVM-RVVLTSSvAAIGGSPDK-SKG-------TAANPYTSADWSPDSMQSSYAVSK 157
                    45666777777777777788899***************99888.66667775777777764.333.......34558889999999********** PP

                    HHHHHHHHHHHHHH---EEEEEE-EEE-......- CS
  NAD_binding_4 181 alaEklvrearrrsglpvvivRpsiitg......e 209
                      aEk   + + + gl+++ + ps + g       
     KOO20806.1 158 TQAEKGAWALAAELGLKMTTIHPSFVQGpmllprA 192
                    ***********9**************997776653 PP

>> KR  KR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.2   0.1      0.14   3.1e+02       3      19 ..       8      24 ..       7      33 .. 0.88
   2 ?   13.8   0.1   1.8e-05     0.041      80     157 ..      68     141 ..      53     156 .. 0.79
   3 ?   -4.1   0.1       5.6   1.2e+04      81     101 ..     216     236 ..     206     239 .. 0.70

  Alignments for each domain:
  == domain 1  score: 1.2 bits;  conditional E-value: 0.14
                EEEETTTSHHHHHHHHH CS
          KR  3 ylitGGlGgLGlelarw 19
                +l+tG +G +G ++ar 
  KOO20806.1  8 VLVTGVTGFIGSHVARV 24
                69************985 PP

  == domain 2  score: 13.8 bits;  conditional E-value: 1.8e-05
                 S---EEEE---------TTT--HHHHHHHHTTTTHHHHHHHHHTTTS--SEEEEEEEHHHHH--TT-HHHHHHHHHHH CS
          KR  80 ppikGvihaAgvlrdklleemtaedleqvlapKvkGawnLhelledesldffvlfSSiagllgsagqanYaaaNaflD 157
                 ++++G+   A v+   + +++++++++++    ++G+  + ++ ++  +  +vl+SS+a++ gs+ +++ +aaN +  
  KOO20806.1  68 DAMSGCTFLAHVASPFPGSDVSDSEMKTA----IEGTSKVLRAAKKAGVMRVVLTSSVAAIGGSPDKSKGTAANPYTS 141
                 56666666666666666666666666665....689999999********************************9875 PP

  == domain 3  score: -4.1 bits;  conditional E-value: 5.6
                 ---EEEE---------TTT-- CS
          KR  81 pikGvihaAgvlrdklleemt 101
                 ++ Gv+  A +  ++ll++ t
  KOO20806.1 216 NVVGVVDVAEAHVKALLAHDT 236
                 567788777777777766655 PP

>> Polysacc_synt_2  Polysaccharide biosynthesis protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   2.6   0.00022      0.49       1     129 [.       8     121 ..       8     127 .. 0.61

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 0.00022
                      EEEETTTSHHHHHHHHHHHHHB-SEEEEEES-HHHHHHHHHH......-TTEEEE....E--TT-HHHHHHHTT..T-SEEEE------HHHHH CS
  Polysacc_synt_2   1 vlvtGagGsiGselvrqilkkkpkkiillerdElklyeiekeleeelkkkklkveivpvigdvrdkerlekaleelkvdvvfhaAAlKhVPlve 94 
                      vlvtG +G iGs++ r +++ +   ++      ++ y ie+ +   ++   ++v+    + d  + ++l +a++  ++ ++ h+A     P  +
       KOO20806.1   8 VLVTGVTGFIGSHVAR-VAQLSGLAVRG-TVRGTAHYGIEQAVP-GIEL--VNVD----LLDSSE-QELVDAMS--GCTFLAHVAS--PFPGSD 87 
                      6777777777777654.33333333332.234456667776651.1211..2222....445443.44556666..7777777776..345544 PP

                      HSHHHHHHHHHHHHHHHHHHHHHTT-SEEEEEEEG CS
  Polysacc_synt_2  95 enpleaiktNvlgtenvieaaieagvkkvvliStD 129
                          + +kt + gt++v++aa++agv +vvl S+ 
       KOO20806.1  88 VSD-SEMKTAIEGTSKVLRAAKKAGVMRVVLTSSV 121
                      444.4589************************985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (341 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       351  (0.0195772); expected 358.6 (0.02)
Passed bias filter:                      282  (0.0157287); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.46u 0.27s 00:00:00.73 Elapsed: 00:00:00.42
# Mc/sec: 2462.57
//
Query:       KOO20807.1  [L=355]
Description: ankyrin repeat-containing protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    8.4e-28   96.4   0.7    1.6e-10   41.3   0.0    4.2  4  Ank_4            Ankyrin repeats (many copies)
    7.1e-27   93.8   0.3    4.1e-13   49.7   0.0    3.2  3  Ank_2            Ankyrin repeats (3 copies)
    3.3e-24   82.3   1.9    4.6e-05   23.5   0.0    5.4  5  Ank_3            Ankyrin repeat
    7.1e-21   74.0   1.8      1e-08   35.3   0.1    4.8  5  Ank_5            Ankyrin repeats (many copies)
    2.1e-19   69.0   0.6    0.00071   19.9   0.1    4.6  4  Ank              Ankyrin repeat
     0.0098   16.3   0.8       0.02   15.3   0.8    1.5  1  ADAM_CR          ADAM cysteine-rich
  ------ inclusion threshold ------
      0.095   12.9   0.8       0.18   12.0   0.2    1.8  1  Phospholip_A2_2  Phospholipase A2
       0.13   12.4   0.0       0.25   11.5   0.0    1.4  1  DUF695           Family of unknown function (DUF695)


Domain annotation for each model (and alignments):
>> Ank_4  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.2   0.1   2.7e-12   6.1e-09       4      55 .]       7      57 ..       5      57 .. 0.96
   2 !   26.1   0.0   4.2e-09   9.3e-06      12      55 .]      48      90 ..      47      90 .. 0.96
   3 !   41.3   0.0   7.1e-14   1.6e-10       3      54 ..      72     123 ..      70     124 .. 0.91
   4 !   10.1   0.0   0.00043      0.97       5      30 ..     141     166 ..     125     189 .. 0.80

  Alignments for each domain:
  == domain 1  score: 36.2 bits;  conditional E-value: 2.7e-12
       Ank_4  4 aLhyaaisgrlelvrlLlekgadinaqdnrsGetalhiAakrgnveilklLl 55
                aL +aa +grl+ ++ +le+g+ +n + +++G t+l +A+  g+ +++  Ll
  KOO20807.1  7 ALRAAARHGRLDELKACLENGMHVNVT-DEDGATPLLMACCYGHTSCVDVLL 57
                7999999********************.********************9997 PP

  == domain 2  score: 26.1 bits;  conditional E-value: 4.2e-09
       Ank_4 12 grlelvrlLlekgadinaqdnrsGetalhiAakrgnveilklLl 55
                g++ +v+ Ll  +ad+n    + G t++ +A++ +++++lklL+
  KOO20807.1 48 GHTSCVDVLLKANADPNVP-GKHGITPVFFACQENHPSCLKLLI 90
                89****************8.899********************8 PP

  == domain 3  score: 41.3 bits;  conditional E-value: 7.1e-14
       Ank_4   3 taLhyaaisgrlelvrlLlekgadinaqdnrs.GetalhiAakrgnveilklL 54 
                 t+ + a+++++  +++lL+++ga+++   n++ G t+l+iA++++nve+l++L
  KOO20807.1  72 TPVFFACQENHPSCLKLLIARGANLDTP-NSQdGGTPLYIACSKNNVECLRML 123
                 899*********************8777.544499****************98 PP

  == domain 4  score: 10.1 bits;  conditional E-value: 0.00043
       Ank_4   5 LhyaaisgrlelvrlLlekgadinaq 30 
                 L  a+ + + e+v+l++++ga+i++ 
  KOO20807.1 141 LQTAMRKKHKECVKLCIQYGAEIDKG 166
                 55688899**************9875 PP

>> Ank_2  Ankyrin repeats (3 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.7   0.1   3.8e-11   8.5e-08      28      81 ..       6      65 ..       2      67 .. 0.89
   2 !   49.7   0.0   1.8e-16   4.1e-13      20      81 ..      61     132 ..      59     134 .. 0.86
   3 !   11.6   0.0   0.00014      0.32      25      60 ..     136     178 ..     130     195 .. 0.64

  Alignments for each domain:
  == domain 1  score: 32.7 bits;  conditional E-value: 3.8e-11
       Ank_2 28 taLhyAakngnleivklLleh......adndgrtpLhyAarsghleivklLlekgadinl 81
                 aL +Aa++g l+ +k+ le+      +d+dg tpL +A+++gh+ +v++Ll+ +ad+n+
  KOO20807.1  6 QALRAAARHGRLDELKACLENgmhvnvTDEDGATPLLMACCYGHTSCVDVLLKANADPNV 65
                6899******9999*****96667776669**********************889**996 PP

  == domain 2  score: 49.7 bits;  conditional E-value: 1.8e-16
       Ank_2  20 adpn...kngktaLhyAakngnleivklLleh...ad....ndgrtpLhyAarsghleivklLlekgadinl 81 
                 adpn   k g t++++A+++++  ++klL++    +d    +dg tpL++A+++++ e++++L+e gad+n+
  KOO20807.1  61 ADPNvpgKHGITPVFFACQENHPSCLKLLIARganLDtpnsQDGGTPLYIACSKNNVECLRMLCEAGADVNK 132
                 788875449*********************9665533555789***************************96 PP

  == domain 3  score: 11.6 bits;  conditional E-value: 0.00014
       Ank_2  25 ngktaLhyAakngnleivklLleh...ad....ndgrtpLhyA 60 
                 +g t L++A ++ ++e+vkl +++   +d      ++tp ++A
  KOO20807.1 136 DGSTGLQTAMRKKHKECVKLCIQYgaeIDkglpPANKTPFQMA 178
                 5677777777777777777777766443333444466666666 PP

>> Ank_3  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.9   0.1    0.0011       2.6       6      30 ..       8      31 ..       5      32 .. 0.89
   2 !   20.2   0.1   2.3e-07   0.00052       1      31 []      36      65 ..      36      65 .. 0.95
   3 !   14.5   0.0   1.7e-05     0.038       1      30 [.      69      97 ..      69      98 .. 0.94
   4 !   23.5   0.0   2.1e-08   4.6e-05       1      30 [.     103     131 ..     103     132 .. 0.94
   5 !   10.2   0.0   0.00043      0.97       1      30 [.     136     164 ..     136     165 .. 0.93

  Alignments for each domain:
  == domain 1  score: 8.9 bits;  conditional E-value: 0.0011
       Ank_3  6 LhlAarsgnleivkfLlenkgadvn 30
                L  Aar+g+l+ +k++le +g+ vn
  KOO20807.1  8 LRAAARHGRLDELKACLE-NGMHVN 31
                5679******88******.8**999 PP

  == domain 2  score: 20.2 bits;  conditional E-value: 2.3e-07
       Ank_3  1 nGetpLhlAarsgnleivkfLlenkgadvna 31
                +G tpL +A+ +g+++ v+ Ll+  +ad+n+
  KOO20807.1 36 DGATPLLMACCYGHTSCVDVLLK-ANADPNV 65
                699********************.8****95 PP

  == domain 3  score: 14.5 bits;  conditional E-value: 1.7e-05
       Ank_3  1 nGetpLhlAarsgnleivkfLlenkgadvn 30
                +G tp ++A+  ++++ +k+L+  +ga+++
  KOO20807.1 69 HGITPVFFACQENHPSCLKLLIA-RGANLD 97
                699*************9******.9**997 PP

  == domain 4  score: 23.5 bits;  conditional E-value: 2.1e-08
       Ank_3   1 nGetpLhlAarsgnleivkfLlenkgadvn 30 
                 +G tpL++A++ +n+e +++L+e  gadvn
  KOO20807.1 103 DGGTPLYIACSKNNVECLRMLCE-AGADVN 131
                 588********************.9****9 PP

  == domain 5  score: 10.2 bits;  conditional E-value: 0.00043
       Ank_3   1 nGetpLhlAarsgnleivkfLlenkgadvn 30 
                 +G t L +A+r  + e vk++++ +ga+++
  KOO20807.1 136 DGSTGLQTAMRKKHKECVKLCIQ-YGAEID 164
                 58899******************.***997 PP

>> Ank_5  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.7   0.1   8.2e-08   0.00018      23      56 .]      11      44 ..       7      44 .. 0.94
   2 !   35.3   0.1   4.5e-12     1e-08       2      53 ..      24      74 ..      24      77 .. 0.95
   3 !    8.8   0.0   0.00091         2      22      48 ..      76     102 ..      75     103 .. 0.93
   4 !   26.2   0.0   3.2e-09   7.1e-06       9      55 ..      99     143 ..      97     144 .. 0.89
   5 !    6.9   0.0    0.0036       8.1       4      41 ..     126     162 ..     124     164 .. 0.91

  Alignments for each domain:
  == domain 1  score: 21.7 bits;  conditional E-value: 8.2e-08
       Ank_5 23 AakygaadvvrlLlargadlnltdsrGltaldlA 56
                Aa++g++d ++ +l++g++ n+td++G t+l +A
  KOO20807.1 11 AARHGRLDELKACLENGMHVNVTDEDGATPLLMA 44
                999***************************9877 PP

  == domain 2  score: 35.3 bits;  conditional E-value: 4.5e-12
       Ank_5  2 lehgpadvnrldgggntpLhvAakygaadvvrlLlargadlnltdsrGltal 53
                le+g + vn +d++g tpL +A+ yg+ ++v +Ll+ +ad+n+  ++G t++
  KOO20807.1 24 LENG-MHVNVTDEDGATPLLMACCYGHTSCVDVLLKANADPNVPGKHGITPV 74
                7899.99999999999**********************************98 PP

  == domain 3  score: 8.8 bits;  conditional E-value: 0.00091
       Ank_5  22 vAakygaadvvrlLlargadlnltdsr 48 
                 +A+  +++++++lL+arga+l++ +s+
  KOO20807.1  76 FACQENHPSCLKLLIARGANLDTPNSQ 102
                 69*******************999875 PP

  == domain 4  score: 26.2 bits;  conditional E-value: 3.2e-09
       Ank_5   9 vnrldgggntpLhvAakygaadvvrlLlargadlnltdsrGltaldl 55 
                 +n +dgg  tpL +A+++++ +++r+L++ gad n    +G+t l+ 
  KOO20807.1  99 PNSQDGG--TPLYIACSKNNVECLRMLCEAGADVNKPRVDGSTGLQT 143
                 6788888..**************************999999886665 PP

  == domain 5  score: 6.9 bits;  conditional E-value: 0.0036
       Ank_5   4 hgpadvnrldgggntpLhvAakygaadvvrlLlargad 41 
                 +g advn ++ +g t L +A ++ + ++v+l++ +ga 
  KOO20807.1 126 AG-ADVNKPRVDGSTGLQTAMRKKHKECVKLCIQYGAE 162
                 56.9*****************************99986 PP

>> Ank  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.9   0.1   3.2e-07   0.00071       1      29 [.      36      65 ..      36      68 .. 0.92
   2 !   19.0   0.0     6e-07    0.0013       1      30 [.      69      99 ..      69     103 .. 0.87
   3 !   19.0   0.0   6.4e-07    0.0014       1      28 [.     103     131 ..     103     134 .. 0.92
   4 !    6.3   0.0    0.0065        15       2      28 ..     137     164 ..     136     166 .. 0.79

  Alignments for each domain:
  == domain 1  score: 19.9 bits;  conditional E-value: 3.2e-07
                TSBBHHHHHHHHTTHHHHHHHH.TTTSTTC CS
         Ank  1 dGnTPLHlAatngkkriiklLL.hGAnlna 29
                dG TPL +A+++g+++++  LL   A++n 
  KOO20807.1 36 DGATPLLMACCYGHTSCVDVLLkANADPNV 65
                899*******************668***96 PP

  == domain 2  score: 19.0 bits;  conditional E-value: 6e-07
                TSBBHHHHHHHHTTHHHHHHHH.TTTSTTCB CS
         Ank  1 dGnTPLHlAatngkkriiklLL.hGAnlnal 30
                +G TP   A+++++++++klL+ +GAnl+  
  KOO20807.1 69 HGITPVFFACQENHPSCLKLLIaRGANLDTP 99
                699*******************99***7644 PP

  == domain 3  score: 19.0 bits;  conditional E-value: 6.4e-07
                 TSBBHHHHHHHHTTHHHHHHHH.TTTSTT CS
         Ank   1 dGnTPLHlAatngkkriiklLL.hGAnln 28 
                 dG TPL +A++ ++++++++L   GA++n
  KOO20807.1 103 DGGTPLYIACSKNNVECLRMLCeAGADVN 131
                 678******************988****9 PP

  == domain 4  score: 6.3 bits;  conditional E-value: 0.0065
                 SBBHHHHHHHHTTHHHHHHHH.TTTSTT CS
         Ank   2 GnTPLHlAatngkkriiklLL.hGAnln 28 
                 G T L  A + ++k+++kl + +GA+++
  KOO20807.1 137 GSTGLQTAMRKKHKECVKLCIqYGAEID 164
                 5666666778899*****99977**986 PP

>> ADAM_CR  ADAM cysteine-rich
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.8   8.8e-06      0.02      37     107 ..      83     158 ..      71     166 .. 0.68

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 8.8e-06
     ADAM_CR  37 daCyeelnskgdrfgnCgkekkkk..yvkcekedvlCGklqCenvkekpelkee.atviqtkiknkk..Ckgidve 107
                  +C + l  +g +    +++  ++  y+ c+k++v C ++ Ce ++++++ + + +t +qt +++k+  C+++ ++
  KOO20807.1  83 PSCLKLLIARGANLDTPNSQDGGTplYIACSKNNVECLRMLCEAGADVNKPRVDgSTGLQTAMRKKHkeCVKLCIQ 158
                 55665555555555444443333367*******************8877766666777788887443469887664 PP

>> Phospholip_A2_2  Phospholipase A2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.2   8.1e-05      0.18      17      72 ..      33      88 ..      21      98 .. 0.87

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 8.1e-05
                     TT---SSHHHHHHHHHHHT-SSEE-TT-EETTEE--SSS-EEBHHHHHHHHHHHHT CS
  Phospholip_A2_2 17 eedlGkeketdkCCreHdeceekiealetkygltnkklftlshCecdeefrkCLkk 72
                     +++ G++  + +CC  H +c + + + + + ++  k+ +t +  +c+e+  +CLk 
       KOO20807.1 33 TDEDGATPLLMACCYGHTSCVDVLLKANADPNVPGKHGITPVFFACQENHPSCLKL 88
                     566677888889******************************************86 PP

>> DUF695  Family of unknown function (DUF695)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   0.00011      0.25      26     111 ..     143     227 ..     135     237 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.00011
      DUF695  26 fapsekykhvvvvrveykapdenGlpseeeydkLekiedallealkakpnalyvGritsngtrdlyfytkdteeleevleealref 111
                  a  +k+k +v + ++y a+ ++Glp  ++++  + ++   +  l +   a+++G++ +  +rdl+   ++ ++ +++ ++  r+ 
  KOO20807.1 143 TAMRKKHKECVKLCIQYGAEIDKGLPPANKTPFQMAMDMVYAGDL-KMRRAYLIGMLEQHEKRDLIAANEKLKAKAKASDTKARAA 227
                 466899999************************************.7*******************98888777777666665555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (355 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       576  (0.0321267); expected 358.6 (0.02)
Passed bias filter:                      377  (0.0210274); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.49u 0.27s 00:00:00.76 Elapsed: 00:00:00.42
# Mc/sec: 2514.81
//
Query:       KOO20808.1  [L=184]
Description: hypothetical protein Ctob_003910 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.5e-07   31.6   0.0    2.4e-07   31.0   0.0    1.3  1  PDZ       PDZ domain
    3.7e-06   27.2   0.1    6.7e-06   26.3   0.1    1.4  1  PDZ_2     PDZ domain
      6e-05   22.8   0.1    9.3e-05   22.2   0.1    1.3  1  PDZ_6     PDZ domain
  ------ inclusion threshold ------
      0.011   15.7   0.1      0.031   14.3   0.0    1.5  2  DUF4245   Protein of unknown function (DUF4245)


Domain annotation for each model (and alignments):
>> PDZ  PDZ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.0   0.0   5.4e-11   2.4e-07       3      78 ..      18      92 ..      16      96 .. 0.82

  Alignments for each domain:
  == domain 1  score: 31.0 bits;  conditional E-value: 5.4e-11
                EEETS.TTSESSEEEEEETTSSSSSSEEEEEECTT.SHHHHHTSSTTEEEEEETTEETTTSHHHHHHHHHHTTTSEEE CS
         PDZ  3 sleke.grgglGfslkggsdqrgdkgifvsevlpg.gaaeadglkvGDkIlsvNgvdvenvsheeavqaikgskgkvt 78
                ++ k   + +lG++l+  +d+ +  g++++++ ++ +  ea++l +GD+++svN v+v+++s   a++  ++++g+++
  KOO20808.1 18 DVFKAtPTTRLGLTLQPPEDE-TVAGVVIAHIDANaPLREAKKLLPGDIVTSVNCVPVASLSAVSAQI--QQASGVLR 92
                566666889********9998.7************88888888******************8777765..44444555 PP

>> PDZ_2  PDZ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.3   0.1   1.5e-09   6.7e-06       3      58 ..      28      86 ..      26      90 .. 0.86

  Alignments for each domain:
  == domain 1  score: 26.3 bits;  conditional E-value: 1.5e-09
                ..XX------....-EEEEEE-TTSGGGGT..--TT-EEEEETTB--SSHHHHHHHHHT CS
       PDZ_2  3 lGvsvsdeed..tggvlvvsVkeggPaakag.lkagDvilkvdgkkvksledlislllk 58
                lG ++++ ed    gv++++++ + P  +a+ l +gD++++v+ ++v sl+ +  ++++
  KOO20808.1 28 LGLTLQPPEDetVAGVVIAHIDANAPLREAKkLLPGDIVTSVNCVPVASLSAVSAQIQQ 86
                666666666555789***************99*******************99998875 PP

>> PDZ_6  PDZ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.2   0.1   2.1e-08   9.3e-05       4      54 ..      47      95 ..      44      98 .. 0.81

  Alignments for each domain:
  == domain 1  score: 22.2 bits;  conditional E-value: 2.1e-08
       PDZ_6  4 aVdpgsPAdrAG.lrvGDiilsvNGqpveglsladvaallrgsagesvvlvv 54
                 +d++ P  +A  l +GDi++svN +pv   sl  v+a +++ a   ++++v
  KOO20808.1 47 HIDANAPLREAKkLLPGDIVTSVNCVPV--ASLSAVSAQIQQ-ASGVLRFEV 95
                5788999999988***************..***********5.554544444 PP

>> DUF4245  Protein of unknown function (DUF4245)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.0      0.69   3.1e+03      36      57 ..      43      65 ..      28      73 .. 0.68
   2 ?   14.3   0.0   6.9e-06     0.031      42     119 ..      80     159 ..      74     163 .. 0.94

  Alignments for each domain:
  == domain 1  score: -2.0 bits;  conditional E-value: 0.69
     DUF4245 36 q.vpevDvaaaletaaraapfpv 57
                  + ++D+ a l++a++ +p ++
  KOO20808.1 43 VvIAHIDANAPLREAKKLLPGDI 65
                33678899999998888777655 PP

  == domain 2  score: 14.3 bits;  conditional E-value: 6.9e-06
     DUF4245  42 vaaaletaaraapfpvraPglpegWkansarrtavdg..epawtvGyvtpegqyisltqsdadeddlvasvlggaeetgt 119
                 v+a++++a++++ f+v+   lp+gW+++++ ++++ +   +  ++G    +  +++ t ++++ + +va+++ ++e+ g 
  KOO20808.1  80 VSAQIQQASGVLRFEVLRRPLPAGWRTKYVVVEGEIRirYRNKKLGLWMLSHPHARHTHTKETMEGAVADSDSEDEAHGA 159
                 6899******************************99999899999*999***********************99999886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (184 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       308  (0.0171789); expected 358.6 (0.02)
Passed bias filter:                      277  (0.0154498); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.39u 0.24s 00:00:00.63 Elapsed: 00:00:00.39
# Mc/sec: 1420.01
//
Query:       KOO20809.1  [L=637]
Description: membrane protein- a permease [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.7e-36  125.4  34.1      1e-24   87.3  18.9    3.2  3  AI-2E_transport  AI-2E family transporter


Domain annotation for each model (and alignments):
>> AI-2E_transport  AI-2E family transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.4   3.5   5.4e-15   9.7e-11       3     141 ..      91     239 ..      89     241 .. 0.73
   2 !    4.4   0.1   0.00096        17     121     163 ..     338     378 ..     297     383 .. 0.73
   3 !   87.3  18.9   5.8e-29     1e-24     179     325 ..     433     581 ..     427     583 .. 0.96

  Alignments for each domain:
  == domain 1  score: 41.4 bits;  conditional E-value: 5.4e-15
  AI-2E_transport   3 lilvllllllalypfiselllplliAlvlayllnpvvkfLkkr........gvkrvlavllvlllllvllvllvlllvplliaqltqlvkslpa 88 
                      ++++++++ +aly++ s +l+pl++A+ +a ll p +++L+++        +++r +avl+++l++l +++ ++ll++ + +a ++++ +++ +
       KOO20809.1  91 AVIATAVIFAALYYLRS-ILVPLFLAIAIAHLLLPMIDWLNRKryilcvpyKIPRGIAVLITVLFALFIVFNIGLLIA-ESVAVFAKNAEQYNK 182
                      56677777777777777.**********************6652555555569******9988877766666666666.666667777777777 PP

  AI-2E_transport  89 yidslqnilnelpslleelen....liqalkqslskilsnilssilnsllsllasll 141
                       +++++++  el+++ + + +     ++a+   + + +++ +ss+++ +++ll +++
       KOO20809.1 183 RVSQILDLAFELSDEAQMELErrtaEAKASVAGTYNAAAEAVSSVTEDATDLLTWAT 239
                      777777777777766666541577878888888888888888888888888887776 PP

  == domain 2  score: 4.4 bits;  conditional E-value: 0.00096
  AI-2E_transport 121 ilsnilssilnsllsllasllglilslvlvllllffllldgek 163
                       +++i  ++ + +++ll+s++ +i +lv ++l+l+f+ll  + 
       KOO20809.1 338 AFNEI--NLSSLISDLLGSAVHVIKDLVYIVLFLMFMLLGSHG 378
                      44433..456778888899999999999999999999988775 PP

  == domain 3  score: 87.3 bits;  conditional E-value: 5.8e-29
  AI-2E_transport 179 rvkailrelektlsgylrgqvlvaliigvlvfigllilgvpyalllailvglanliPyiGavivlipiaiialltgg..ikevlivlivvllvq 270
                       v+ ++++++ ++s+y++g+v++al+++ +++++l + g+++ l++++l++ +n++P iG +i+++ ++ +++l++   ++e+l+++++ ll+ 
       KOO20809.1 433 GVALMHSAAQAQVSKYIQGKVIIALVVAGVHAAVLFYVGLELFLVFGLLSFALNFVPAIGMYISILLPMPLVVLDDAftPMEALLAFVLPLLIG 526
                      5777899999****************************************************************9999999************* PP

  AI-2E_transport 271 liegnilePklmgkrlglhplvillsllaggklfGlvGlilavpltavikailea 325
                      l  + + eP l+g++++l p+++ll+ l++g ++G+ G+ +avp+tav+ + l++
       KOO20809.1 527 LAAKDVMEPLLIGSATRLQPVAMLLATLLWGGIWGITGMVIAVPVTAVCRVYLQN 581
                      *************************************************998886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (637 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1655  (0.0923086); expected 358.6 (0.02)
Passed bias filter:                      901  (0.0502538); expected 358.6 (0.02)
Passed Vit filter:                       100  (0.00557756); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.74u 0.31s 00:00:01.05 Elapsed: 00:00:00.47
# Mc/sec: 4085.60
//
Query:       KOO20810.1  [L=406]
Description: proton myo-inositol cotransporter, partial [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.6e-70  238.3   4.7    2.4e-53  181.6   0.6    2.0  2  Sugar_tr         Sugar (and other) transporter
    1.8e-24   86.4  26.0      3e-23   82.3  25.8    2.0  1  MFS_1            Major Facilitator Superfamily
      2e-09   36.5   3.7    5.2e-08   31.8   1.5    2.1  2  TRI12            Fungal trichothecene efflux pump (TRI12)
     0.0016   17.4   0.5      0.089   11.6   2.8    2.2  3  MFS_1_like       MFS_1 like family
  ------ inclusion threshold ------
       0.35    9.4  15.6        0.5    8.9   3.8    2.5  3  MFS_2            MFS/sugar transport protein


Domain annotation for each model (and alignments):
>> Sugar_tr  Sugar (and other) transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  181.6   0.6   6.7e-57   2.4e-53       2     234 ..      24     242 ..      23     253 .. 0.91
   2 !   58.5   0.2   1.5e-19   5.3e-16     238     344 ..     297     403 ..     285     405 .. 0.89

  Alignments for each domain:
  == domain 1  score: 181.6 bits;  conditional E-value: 6.7e-57
                 HHHHHHHHHHHHHHHHCGGGTHHHHHHHHTSTT--SHHHHHH...HHHHHHHTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH-TTTTS CS
    Sugar_tr   2 alvaalggllfgYdtgvigafltllkfaknfglsksksskeessvlsglivsiflvGaiiGslfagllgdrfGRkkslliaavlfvigavlqaaakgkn 100
                 + v ++gg+lfgYdtgv+++++ l+     + ++  + ++e       +ivs++   a++G++ +g +  +fGRk++l+++a++f +ga+++a+a    
  KOO20810.1  24 TAVSCIGGFLFGYDTGVVSGAMVLIR----EEWELDDVAHE-------MIVSSTTGLAAVGAFASGSANRIFGRKPVLVASAIIFTAGALVMAFAV--- 108
                 67899******************999....77777777666.......9***********************************************... PP

                 S-TGGGGGHHHHHHHHHHHHHHHHHHHHTTS-SCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTSS-TTHHHHHHHCCHHHHHHHHHHGGGS---HHHHH CS
    Sugar_tr 101 svevlivgRvlvGigvGlasvlvPmyisEiApkklRgalvslyqlaitfGilvaaifglglnktsnadgwrillglqlvpallllilllflPESPrylv 199
                 ++  l+vgR+ vG++vGlas +vP++++E+Ap++lRg+lv l+++++++G++ aai+   l+  +   gwr++lgl  vp+ ++l++l+flPESPr+l+
  KOO20810.1 109 NFNWLLVGRMTVGVAVGLASSTVPLFLAELAPPRLRGFLVALNNSCVVIGQVGAAIVAGLLSGDKV-HGWRLMLGLGGVPSAIQLVGLYFLPESPRWLL 206
                 9**************************************************999998776644444.68****************************** PP

                 HTT-HHHHHHHHHHHHHC.HHHHHHHHHHHHHHHHH CS
    Sugar_tr 200 ekgkeeeakevlaklrge.edadrelaeekdsleae 234
                 ++g+e+ea++vl++lr +  d+d+++++e+++  a+
  KOO20810.1 207 SRGREQEARQVLRRLRADsHDVDDAVEAEVAEVIAA 242
                 **************8877678888888777766554 PP

  == domain 2  score: 58.5 bits;  conditional E-value: 1.5e-19
                 .....HTTHHHHSH...HHHHHHHHHHHHHHTTHHHHHHHTTTHHHHSS-THH...HHHHHHHHHHHHHHHHHHHHHHHHS-SHHHHHHHHHHHHHHHH CS
    Sugar_tr 238 e.kaswkellssktvrqrlligvvlqifqqltGinaimyysptifenlglsks...llvtiivgvvnfvatfvaiflvdrfGRRtllllGaagmaicfv 332
                 +  +sw+el++    r++l +gv+l ++qql+Gin +myys ti+ ++++      ++  + v + + v ++++  l+d +GRR+l+l++++  a++++
  KOO20810.1 297 SgPVSWSELWTV---RRQLRLGVGLLMLQQLVGINTVMYYSVTILMEAHVASGsavIWLAVPVATSQLVGCLIGGSLIDCVGRRPLVLTSLLCVALALA 392
                 35789*****98...77*********************************9988988999999999****************************99999 PP

                 HHH..HHHHTTS CS
    Sugar_tr 333 ilgivalllvak 344
                 + g  a++l+++
  KOO20810.1 393 LEG-YAFVLSDE 403
                 988.77776665 PP

>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   82.3  25.8   8.3e-27     3e-23       2     289 ..      28     392 ..      27     393 .. 0.85

  Alignments for each domain:
  == domain 1  score: 82.3 bits;  conditional E-value: 8.3e-27
       MFS_1   2 llaaflsalarsilgpalplalaedlgispseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllllfasslwlllvlrvlqGlgag 100
                 ++++fl +++ ++++ a+  ++ e+  ++  +  ++++  + +aav+++  G+    fGr++vl++++++f +g+l+++fa ++ +llv+r+  G++ g
  KOO20810.1  28 CIGGFLFGYDTGVVSGAMV-LIREEWELDDVAHEMIVSSTTGLAAVGAFASGSANRIFGRKPVLVASAIIFTAGALVMAFAVNFNWLLVGRMTVGVAVG 125
                 6899***************.9****99999999999999999********************************99999988888************** PP

       MFS_1 101 alfpagaaliadwfpkeergraigllsagfslGailgpllgglla..sslgWravfyilaivsllafvlfllllpeepperkrkspkeee......... 188
                 ++ +++  ++a+++p++ rg+ ++l ++++ +G + +++++gll+     gWr++  + ++ s++ +v    l++ ++++r+  s  +e          
  KOO20810.1 126 LASSTVPLFLAELAPPRLRGFLVALNNSCVVIGQVGAAIVAGLLSgdKVHGWRLMLGLGGVPSAIQLV---GLYFLPESPRWLLSRGREQearqvlrrl 221
                 *********************************************855556***************77...777777777777777777779******* PP

       MFS_1 189 .........................................................................kgtgpaplvpawkallkdpvlwilli 214
                                                                                          +g gp +++++w+  +  +    l +
  KOO20810.1 222 radshdvddaveaevaeviaaleaegiqprrrppppllpasstrtamgsvppptglngagagyeiagggegssEGSGPVSWSELWTVRRQLR----LGV 316
                 ******************************************99********************9999996666666666666444444444....333 PP

       MFS_1 215 alllf..ffgfsglltllplylqevlgls..glllaglllallalvgailallagrlsdrlgrrrrlllallllllaal 289
                 +ll+    +g++++++++ ++l+e +  s  +++ +++ +a ++lvg   +l++g l+d +grr+  l +ll+++la++
  KOO20810.1 317 GLLMLqqLVGINTVMYYSVTILMEAHVASgsAVIWLAVPVATSQLVG---CLIGGSLIDCVGRRPLVLTSLLCVALALA 392
                 33333335577778888888755555555675566666688888888...************87777777777776654 PP

>> TRI12  Fungal trichothecene efflux pump (TRI12)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.8   1.5   1.5e-11   5.2e-08      91     225 ..      70     205 ..      55     222 .. 0.74
   2 !    4.8   0.0    0.0021       7.4      88     115 ..     357     384 ..     337     397 .. 0.81

  Alignments for each domain:
  == domain 1  score: 31.8 bits;  conditional E-value: 1.5e-11
       TRI12  91 qavsilvmgrltdrfgrrpfvilthilglvgaivgctatkfntllaamtllgvaagpagas.plfvgelmsnktk.flgllivsipvvvtsglspylgq 187
                  av  +  g     fgr+p+++++ i+   ga+v + a +fn ll     +gva g a ++ plf+ el   + + fl  l  s  v+   g++   g 
  KOO20810.1  70 AAVGAFASGSANRIFGRKPVLVASAIIFTAGALVMAFAVNFNWLLVGRMTVGVAVGLASSTvPLFLAELAPPRLRgFLVALNNSCVVIGQVGAAIVAGL 168
                 46778888888899********************************99999*****998644*******998865488889889888888877766554 PP

       TRI12 188 rlaiqg..swrwifyiyiitsaiavllivvwyyppsfaql 225
                  l+ +    wr ++ +  + sai   l+ +++ p s + l
  KOO20810.1 169 -LSGDKvhGWRLMLGLGGVPSAI--QLVGLYFLPESPRWL 205
                 .4444401466555555555554..566666666665554 PP

  == domain 2  score: 4.8 bits;  conditional E-value: 0.0021
       TRI12  88 ttgqavsilvmgrltdrfgrrpfvilth 115
                 +t q v  l+ g l d +grrp+v+ + 
  KOO20810.1 357 ATSQLVGCLIGGSLIDCVGRRPLVLTSL 384
                 67899*****************997653 PP

>> MFS_1_like  MFS_1 like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.6   2.8   2.5e-05     0.089     285     373 ..      82     169 ..      58     181 .. 0.88
   2 ?   -0.0   0.0     0.088   3.1e+02      59     135 ..     172     342 ..     159     353 .. 0.67
   3 ?    0.6   0.0     0.056     2e+02     269     295 ..     356     382 ..     263     401 .. 0.65

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 2.5e-05
  MFS_1_like 285 eklGhvklliiallayilrfllyaiienawlvlpievLhgisfgllwaaaveyvskiapksleatgqgllsglyfglGralGsliGGll 373
                 +++G   +l+++ +++++  l++a+  n+ ++l+  +  g+++gl  +++  + +++ap++l++++ +l ++  + +G+   ++++Gll
  KOO20810.1  82 RIFGRKPVLVASAIIFTAGALVMAFAVNFNWLLVGRMTVGVAVGLASSTVPLFLAELAPPRLRGFLVALNNSC-VVIGQVGAAIVAGLL 169
                 789999***************************************************************9887.567877777888876 PP

  == domain 2  score: -0.0 bits;  conditional E-value: 0.088
  MFS_1_like  59 Drfgkrkkvvilslllsavlflsllfip...........pskerqeesklevsvaqdvd........................................ 106
                 D++ +   ++ l+ + sa+ +++l+f+p           ++++rq   +l++ ++   d                                        
  KOO20810.1 172 DKVHGWRLMLGLGGVPSAIQLVGLYFLPesprwllsrgrEQEARQVLRRLRADSH---Dvddaveaevaeviaaleaegiqprrrppppllpasstrta 267
                 6666666677777788889999999999777777764432222332333333322...23357777777777777777888888888888888888888 PP

  MFS_1_like 107 ..............................................aektfwilfllvvlasfflaailvlldaa 135
                                                                +  + +l  lv +++++  ++ +l++a 
  KOO20810.1 268 mgsvppptglngagagyeiagggegssegsgpvswselwtvrrqlrLGVGLLMLQQLVGINTVMYYSVTILMEAH 342
                 888888888888888888888888888887777777777777777766666666666666666666666666664 PP

  == domain 3  score: 0.6 bits;  conditional E-value: 0.056
  MFS_1_like 269 gvvaeiplfffaeklleklGhvkllii 295
                  + ++++  +++  l++ +G + l+++
  KOO20810.1 356 VATSQLVGCLIGGSLIDCVGRRPLVLT 382
                 223333334444444444444444444 PP

>> MFS_2  MFS/sugar transport protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.9   3.8   0.00014       0.5     251     338 ..      48     134 ..      25     142 .. 0.73
   2 ?    6.6   6.5   0.00069       2.5      53     180 ..      72     186 ..      70     200 .. 0.82
   3 ?    7.0   1.1    0.0005       1.8       7      83 ..     316     392 ..     314     394 .. 0.90

  Alignments for each domain:
  == domain 1  score: 8.9 bits;  conditional E-value: 0.00014
       MFS_2 251 ltyvlg.ngsaasvfllvvtisallgiplwqplakrlgkkntyllgalltivllvlvlllqpsnlllflvllviagfgvgvaallpwsm 338
                 ++  ++ ++ a +++   +t +a++g++    +++ +g+k + +++a++  ++ +++ ++   n+ll+  ++v +  +vg+a ++++ +
  KOO20810.1  48 IREEWElDDVAHEMIVSSTTGLAAVGAFASGSANRIFGRKPVLVASAIIFTAGALVMAFAVNFNWLLVGRMTVGV--AVGLASSTVPLF 134
                 566677677788888888899999*****************************9999999777777766666544..444555554444 PP

  == domain 2  score: 6.6 bits;  conditional E-value: 0.00069
       MFS_2  53 vGtlidktstrwGrrrPwlllsaiilavsiillftppelsqsakfiwllvtyillrilytlfeipyvslvpvltkdydeRtsltsvrsflsvlggvlaa 151
                 vG++++ +  r+  r+P l++saii++++ + + ++ +      f wllv  + + +++ l +      +++l + +  R  l +  + + v+g v+aa
  KOO20810.1  72 VGAFASGSANRIFGRKPVLVASAIIFTAGALVMAFAVN------FNWLLVGRMTVGVAVGLASSTVPLFLAEL-APPRLRGFLVALNNSCVVIGQVGAA 163
                 6777777777765569***********99999999977......89999999999999988888888889999.667789999999*********9999 PP

       MFS_2 152 ilafllvlilgglkserkgylifaliial 180
                 i+a+ll    +  +++ +g+++++ ++ +
  KOO20810.1 164 IVAGLL----S--GDKVHGWRLMLGLGGV 186
                 999999....2..3566899998887754 PP

  == domain 3  score: 7.0 bits;  conditional E-value: 0.0005
       MFS_2   7 laanilsvllatylliFytdvlglsaalvglvllvarlvDaitDpivGtlidktst.rwGrrrPwlllsaiilavsii 83 
                 ++  +l  l+++ + ++y+ ++ ++a +++  +++   v + t  +vG li  +     Gr rP++l s++  a++++
  KOO20810.1 316 VGLLMLQQLVGINTVMYYSVTILMEAHVASGSAVIWLAVPVATSQLVGCLIGGSLIdCVGR-RPLVLTSLLCVALALA 392
                 5667888999999***************************************999966777.99*****999998776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (406 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       791  (0.0441185); expected 358.6 (0.02)
Passed bias filter:                      465  (0.0259356); expected 358.6 (0.02)
Passed Vit filter:                        54  (0.00301188); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.56u 0.28s 00:00:00.84 Elapsed: 00:00:00.43
# Mc/sec: 2810.27
//
Query:       KOO20811.1  [L=182]
Description: hypothetical protein Ctob_003916 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (182 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       308  (0.0171789); expected 358.6 (0.02)
Passed bias filter:                      291  (0.0162307); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.40u 0.25s 00:00:00.65 Elapsed: 00:00:00.41
# Mc/sec: 1324.72
//
Query:       KOO20812.1  [L=345]
Description: drug metabolite transporter superfamily [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    7.5e-13   48.8  18.5    9.9e-07   29.0   9.7    2.1  2  EamA             EamA-like transporter family
  ------ inclusion threshold ------
       0.22   11.1   5.0       0.14   11.7   1.4    2.2  2  ABC2_membrane_5  ABC-2 family transporter protein
       0.23   10.9   1.1       0.36   10.3   1.1    1.2  1  Baculo_p74       Baculoviridae p74 conserved region
       0.27   11.0   2.6       0.25   11.2   0.4    2.1  2  Form-deh_trans   Formate dehydrogenase N, transmembrane


Domain annotation for each model (and alignments):
>> EamA  EamA-like transporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.3   1.4     3e-09   1.3e-05      30     136 ..      15     123 ..       2     124 .. 0.90
   2 !   29.0   9.7   2.2e-10   9.9e-07       2     133 ..     133     273 ..     132     277 .. 0.87

  Alignments for each domain:
  == domain 1  score: 25.3 bits;  conditional E-value: 3e-09
        EamA  30 pltltfvrfliagillliiallkegkl...aklslkdwllllllgllgtvlafllffyalkktsasnaslitslePvftlilsvlllgekltlkqllgi 125
                 p+ lt+  +++++++ll+++llkeg +       ++dw +ll++g++++     l + +l +++ s    i + +Pv+++++++ l +  +t    + +
  KOO20812.1  15 PILLTASHMIFGSVALLPLMLLKEGYKgthLDNWRRDWRALLIIGAVNGPQI-ALNNASLVSIELSLNQAIRAAIPVCVACFAFCLERRVPTPVGAAYL 112
                 7899***********************8874444668****99998877555.69******************************************** PP

        EamA 126 vlillGvllil 136
                 +l+ ++++ ++
  KOO20812.1 113 LLVTVSLMCVV 123
                 *****999887 PP

  == domain 2  score: 29.0 bits;  conditional E-value: 2.2e-10
        EamA   2 lgillallaalfwaiyfvls.killrkvspltltfvrfliagillliiallkegkl......aklslkdwllllllgllgtvlafllffyalkktsasn 93 
                 +g+ ++ +++l++++   ls + +++k+++++ltf++  +a+++l+++ ++ ++ +      a  ++++ + ++l g++  v++++++++a+++ s+  
  KOO20812.1 133 WGVSMCAASVLMSSAQMSLSgRLMSSKHDSFQLTFYTGPVAFAVLMAMEAVAQQEMeglqrfALHKPQATAVIVLGGCILAVMYNVVLMQAVRTFSSVG 231
                 899999******999999998999************************9999988888876555555556666777778888888************** PP

        EamA  94 aslitslePvftlilsvlllgekltl..kqllgivlillGvl 133
                  +++ ++  v+ ++ls++llge  t+  + +lg++ +++G++
  KOO20812.1 232 TAVLGNFRIVLLILLSAILLGELQTWgpTRYLGCLTMFVGAA 273
                 *********************97666337999*999999987 PP

>> ABC2_membrane_5  ABC-2 family transporter protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   0.2      0.18   7.9e+02      17      55 ..     112     150 ..     108     154 .. 0.51
   2 ?   11.7   1.4   3.1e-05      0.14      29     122 ..     156     249 ..     143     254 .. 0.88

  Alignments for each domain:
  == domain 1  score: -0.6 bits;  conditional E-value: 0.18
  ABC2_membrane_5  17 llivllllaiiiliflndsvllifsilslvisiililtt 55 
                      ll+v++ l+ ++++ ++++ ++ +s++++ ++++ ++++
       KOO20812.1 112 LLLVTVSLMCVVFTGSEYGEAWGVSMCAASVLMSSAQMS 150
                      344455555555555555544555555544445545555 PP

  == domain 2  score: 11.7 bits;  conditional E-value: 3.1e-05
  ABC2_membrane_5  29 liflndsvllifsilslvisiililttlsyDekskwnkylltLPvtrkeiVksKYlfvlililiailitlllliiavlikgnvtisevllsili 122
                      +  + ds++l+f+  +++++++++++++++ e+++ ++++l  P     iV   +++++++ ++ +  +  ++ +++ + gn+ i  ++l ++i
       KOO20812.1 156 MSSKHDSFQLTFYTGPVAFAVLMAMEAVAQQEMEGLQRFALHKPQATAVIVLGGCILAVMYNVVLMQAVRTFSSVGTAVLGNFRIVLLILLSAI 249
                      445578899999999*******************************************************************986665555554 PP

>> Baculo_p74  Baculoviridae p74 conserved region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   1.1     8e-05      0.36      37      86 ..     185     234 ..     176     250 .. 0.88

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 8e-05
  Baculo_p74  37 esliplleklaldlstsvtkkvlgegiksalvslvvnlairilgtiakmv 86 
                 ++ +  l+++al+  +++  +vlg  i +++ ++v+  a+r+ + ++ +v
  KOO20812.1 185 QQEMEGLQRFALHKPQATAVIVLGGCILAVMYNVVLMQAVRTFSSVGTAV 234
                 45555699**************************************9887 PP

>> Form-deh_trans  Formate dehydrogenase N, transmembrane
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.1       1.4   6.3e+03      16      26 ..     203     213 ..     198     216 .. 0.55
   2 ?   11.2   0.4   5.5e-05      0.25      10      35 ..     258     283 ..     255     285 .. 0.93

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 1.4
                     HHHHHHHHHHH CS
  Form-deh_trans  16 galgmaatala 26 
                     +++++++ +la
      KOO20812.1 203 AVIVLGGCILA 213
                     45555555555 PP

  == domain 2  score: 11.2 bits;  conditional E-value: 5.5e-05
                     TTHHHHHHHHHHHHHHHHHHHHHHH- CS
  Form-deh_trans  10 GvlKplgalgmaatalagffHYitvG 35 
                     G++++lg l+m + a+a ++H +  G
      KOO20812.1 258 GPTRYLGCLTMFVGAAAYALHPMLLG 283
                     99*******************98877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (345 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       574  (0.0320152); expected 358.6 (0.02)
Passed bias filter:                      254  (0.014167); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.48u 0.24s 00:00:00.72 Elapsed: 00:00:00.42
# Mc/sec: 2447.25
//
Query:       KOO20813.1  [L=327]
Description: ankyrin repeat-containing protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    8.6e-28   96.4   2.0    1.4e-10   41.5   0.0    4.2  4  Ank_4            Ankyrin repeats (many copies)
    1.4e-26   92.9   0.7    3.6e-13   49.9   0.0    3.1  3  Ank_2            Ankyrin repeats (3 copies)
    2.2e-24   82.8   1.9    4.2e-05   23.6   0.0    5.3  5  Ank_3            Ankyrin repeat
      5e-21   74.5   1.6    1.9e-08   34.4   0.1    5.4  6  Ank_5            Ankyrin repeats (many copies)
    1.6e-19   69.4   0.8    0.00069   20.0   0.2    4.6  4  Ank              Ankyrin repeat
  ------ inclusion threshold ------
      0.019   15.3   1.9      0.039   14.4   1.9    1.6  1  ADAM_CR          ADAM cysteine-rich
      0.056   13.7   1.0        0.1   12.9   0.2    1.8  1  Phospholip_A2_2  Phospholipase A2
       0.35   11.3   6.2        6.6    7.2   4.9    2.4  2  DUF4140          N-terminal domain of unknown function (DUF41
        6.5    7.3   9.6         17    6.0   9.6    1.7  1  DUF3391          Domain of unknown function (DUF3391)


Domain annotation for each model (and alignments):
>> Ank_4  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.4   0.1   2.7e-12   5.3e-09       4      55 .]       7      57 ..       5      57 .. 0.96
   2 !   25.2   0.0     9e-09   1.8e-05      12      55 .]      48      90 ..      46      90 .. 0.96
   3 !   41.5   0.0     7e-14   1.4e-10       3      54 ..      72     123 ..      70     124 .. 0.91
   4 !   11.5   0.0   0.00018      0.35       5      33 ..     141     170 ..     137     182 .. 0.83

  Alignments for each domain:
  == domain 1  score: 36.4 bits;  conditional E-value: 2.7e-12
       Ank_4  4 aLhyaaisgrlelvrlLlekgadinaqdnrsGetalhiAakrgnveilklLl 55
                aL +aa +grl+ ++ +le+g+ +n + +++G t+l +A+  g+ +++  Ll
  KOO20813.1  7 ALRAAARHGRLDELKACLENGMHVNVT-DEDGATPLLMACCYGHTSCVDVLL 57
                7999999********************.********************9997 PP

  == domain 2  score: 25.2 bits;  conditional E-value: 9e-09
       Ank_4 12 grlelvrlLlekgadinaqdnrsGetalhiAakrgnveilklLl 55
                g++ +v+ Ll  +ad+n    + G t++ +A++ +++++lklL+
  KOO20813.1 48 GHTSCVDVLLKANADPNVA-GKHGITPVFFACQENHPSCLKLLI 90
                89****************8.999********************8 PP

  == domain 3  score: 41.5 bits;  conditional E-value: 7e-14
       Ank_4   3 taLhyaaisgrlelvrlLlekgadinaqdnrs.GetalhiAakrgnveilklL 54 
                 t+ + a+++++  +++lL+++ga+++   n++ G t+l+iA++++nve+l++L
  KOO20813.1  72 TPVFFACQENHPSCLKLLIARGANLDTP-NSQdGGTPLYIACSKNNVECLRML 123
                 899*********************8777.544499****************98 PP

  == domain 4  score: 11.5 bits;  conditional E-value: 0.00018
       Ank_4   5 LhyaaisgrlelvrlLlekgadinaq.dnr 33 
                 L  a+ + + e+v+l++++ga+i+++ +++
  KOO20813.1 141 LQTAMRKKHKECVKLCIQYGAEIDKSlPPA 170
                 5578899*****************995444 PP

>> Ank_2  Ankyrin repeats (3 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.9   0.2   3.7e-11   7.3e-08      28      81 ..       6      65 ..       2      67 .. 0.89
   2 !   49.9   0.0   1.8e-16   3.6e-13      20      81 ..      61     132 ..      59     134 .. 0.86
   3 !   12.4   0.0   8.9e-05      0.18      20      60 ..     128     178 ..     127     184 .. 0.67

  Alignments for each domain:
  == domain 1  score: 32.9 bits;  conditional E-value: 3.7e-11
       Ank_2 28 taLhyAakngnleivklLleh......adndgrtpLhyAarsghleivklLlekgadinl 81
                 aL +Aa++g l+ +k+ le+      +d+dg tpL +A+++gh+ +v++Ll+ +ad+n+
  KOO20813.1  6 QALRAAARHGRLDELKACLENgmhvnvTDEDGATPLLMACCYGHTSCVDVLLKANADPNV 65
                6899******9999*****96667776669**********************889**997 PP

  == domain 2  score: 49.9 bits;  conditional E-value: 1.8e-16
       Ank_2  20 adpn...kngktaLhyAakngnleivklLleh...ad....ndgrtpLhyAarsghleivklLlekgadinl 81 
                 adpn   k g t++++A+++++  ++klL++    +d    +dg tpL++A+++++ e++++L+e gad+n+
  KOO20813.1  61 ADPNvagKHGITPVFFACQENHPSCLKLLIARganLDtpnsQDGGTPLYIACSKNNVECLRMLCEAGADVNK 132
                 788875449*********************9665533555789***************************96 PP

  == domain 3  score: 12.4 bits;  conditional E-value: 8.9e-05
       Ank_2  20 adpn.k..ngktaLhyAakngnleivklLleh...ad....ndgrtpLhyA 60 
                 ad+n    +g t L++A ++ ++e+vkl +++   +d      ++tp ++A
  KOO20813.1 128 ADVNkPrlDGSTGLQTAMRKKHKECVKLCIQYgaeIDkslpPANKTPWQMA 178
                 677742578888888888888888888888877453333343366666555 PP

>> Ank_3  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.1   0.1    0.0012       2.3       6      30 ..       8      31 ..       5      32 .. 0.89
   2 !   20.4   0.1   2.4e-07   0.00047       1      31 []      36      65 ..      36      65 .. 0.95
   3 !   14.7   0.0   1.7e-05     0.034       1      30 [.      69      97 ..      69      98 .. 0.94
   4 !   23.6   0.0   2.1e-08   4.2e-05       1      30 [.     103     131 ..     103     132 .. 0.94
   5 !   10.4   0.0   0.00044      0.87       1      30 [.     136     164 ..     136     165 .. 0.93

  Alignments for each domain:
  == domain 1  score: 9.1 bits;  conditional E-value: 0.0012
       Ank_3  6 LhlAarsgnleivkfLlenkgadvn 30
                L  Aar+g+l+ +k++le +g+ vn
  KOO20813.1  8 LRAAARHGRLDELKACLE-NGMHVN 31
                5679******88******.8**999 PP

  == domain 2  score: 20.4 bits;  conditional E-value: 2.4e-07
       Ank_3  1 nGetpLhlAarsgnleivkfLlenkgadvna 31
                +G tpL +A+ +g+++ v+ Ll+  +ad+n+
  KOO20813.1 36 DGATPLLMACCYGHTSCVDVLLK-ANADPNV 65
                699********************.8****95 PP

  == domain 3  score: 14.7 bits;  conditional E-value: 1.7e-05
       Ank_3  1 nGetpLhlAarsgnleivkfLlenkgadvn 30
                +G tp ++A+  ++++ +k+L+  +ga+++
  KOO20813.1 69 HGITPVFFACQENHPSCLKLLIA-RGANLD 97
                699*************9******.9**997 PP

  == domain 4  score: 23.6 bits;  conditional E-value: 2.1e-08
       Ank_3   1 nGetpLhlAarsgnleivkfLlenkgadvn 30 
                 +G tpL++A++ +n+e +++L+e  gadvn
  KOO20813.1 103 DGGTPLYIACSKNNVECLRMLCE-AGADVN 131
                 588********************.9****9 PP

  == domain 5  score: 10.4 bits;  conditional E-value: 0.00044
       Ank_3   1 nGetpLhlAarsgnleivkfLlenkgadvn 30 
                 +G t L +A+r  + e vk++++ +ga+++
  KOO20813.1 136 DGSTGLQTAMRKKHKECVKLCIQ-YGAEID 164
                 58899******************.***997 PP

>> Ank_5  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.9   0.1   8.2e-08   0.00016      23      56 .]      11      44 ..       7      44 .. 0.94
   2 !   34.4   0.1   9.4e-12   1.9e-08       2      53 ..      24      74 ..      24      77 .. 0.95
   3 !    8.7   0.0    0.0011       2.2      22      47 ..      76     101 ..      75     102 .. 0.93
   4 !   27.6   0.0   1.3e-09   2.6e-06       1      51 [.      89     139 ..      89     144 .. 0.85
   5 !    8.3   0.0    0.0015         3       4      41 ..     126     162 ..     124     164 .. 0.91
   6 ?   -3.1   0.0       5.7   1.1e+04      36      51 ..     230     245 ..     229     246 .. 0.76

  Alignments for each domain:
  == domain 1  score: 21.9 bits;  conditional E-value: 8.2e-08
       Ank_5 23 AakygaadvvrlLlargadlnltdsrGltaldlA 56
                Aa++g++d ++ +l++g++ n+td++G t+l +A
  KOO20813.1 11 AARHGRLDELKACLENGMHVNVTDEDGATPLLMA 44
                999***************************9877 PP

  == domain 2  score: 34.4 bits;  conditional E-value: 9.4e-12
       Ank_5  2 lehgpadvnrldgggntpLhvAakygaadvvrlLlargadlnltdsrGltal 53
                le+g + vn +d++g tpL +A+ yg+ ++v +Ll+ +ad+n+  ++G t++
  KOO20813.1 24 LENG-MHVNVTDEDGATPLLMACCYGHTSCVDVLLKANADPNVAGKHGITPV 74
                7899.99999999999**********************************97 PP

  == domain 3  score: 8.7 bits;  conditional E-value: 0.0011
       Ank_5  22 vAakygaadvvrlLlargadlnltds 47 
                 +A+  +++++++lL+arga+l++ +s
  KOO20813.1  76 FACQENHPSCLKLLIARGANLDTPNS 101
                 69*******************99887 PP

  == domain 4  score: 27.6 bits;  conditional E-value: 1.3e-09
       Ank_5   1 Llehg.padvnrldgggntpLhvAakygaadvvrlLlargadlnltdsrGlt 51 
                 L+++g + d+ +++ gg tpL +A+++++ +++r+L++ gad n    +G+t
  KOO20813.1  89 LIARGaNLDTPNSQDGG-TPLYIACSKNNVECLRMLCEAGADVNKPRLDGST 139
                 78888888888888888.************************9977666666 PP

  == domain 5  score: 8.3 bits;  conditional E-value: 0.0015
       Ank_5   4 hgpadvnrldgggntpLhvAakygaadvvrlLlargad 41 
                 +g advn ++ +g t L +A ++ + ++v+l++ +ga 
  KOO20813.1 126 AG-ADVNKPRLDGSTGLQTAMRKKHKECVKLCIQYGAE 162
                 56.9*****************************99986 PP

  == domain 6  score: -3.1 bits;  conditional E-value: 5.7
       Ank_5  36 largadlnltdsrGlt 51 
                 l+ ++  n+ d++G t
  KOO20813.1 230 LKKPSPVNVEDADGIT 245
                 4788899999999944 PP

>> Ank  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.0   0.2   3.5e-07   0.00069       1      29 [.      36      65 ..      36      68 .. 0.92
   2 !   19.2   0.0   6.1e-07    0.0012       1      30 [.      69      99 ..      69     103 .. 0.87
   3 !   19.1   0.0   6.4e-07    0.0013       1      28 [.     103     131 ..     103     134 .. 0.92
   4 !    6.4   0.0    0.0065        13       2      28 ..     137     164 ..     136     166 .. 0.79

  Alignments for each domain:
  == domain 1  score: 20.0 bits;  conditional E-value: 3.5e-07
                TSBBHHHHHHHHTTHHHHHHHH.TTTSTTC CS
         Ank  1 dGnTPLHlAatngkkriiklLL.hGAnlna 29
                dG TPL +A+++g+++++  LL   A++n 
  KOO20813.1 36 DGATPLLMACCYGHTSCVDVLLkANADPNV 65
                899*******************6689**95 PP

  == domain 2  score: 19.2 bits;  conditional E-value: 6.1e-07
                TSBBHHHHHHHHTTHHHHHHHH.TTTSTTCB CS
         Ank  1 dGnTPLHlAatngkkriiklLL.hGAnlnal 30
                +G TP   A+++++++++klL+ +GAnl+  
  KOO20813.1 69 HGITPVFFACQENHPSCLKLLIaRGANLDTP 99
                699*******************99***7644 PP

  == domain 3  score: 19.1 bits;  conditional E-value: 6.4e-07
                 TSBBHHHHHHHHTTHHHHHHHH.TTTSTT CS
         Ank   1 dGnTPLHlAatngkkriiklLL.hGAnln 28 
                 dG TPL +A++ ++++++++L   GA++n
  KOO20813.1 103 DGGTPLYIACSKNNVECLRMLCeAGADVN 131
                 678******************988****9 PP

  == domain 4  score: 6.4 bits;  conditional E-value: 0.0065
                 SBBHHHHHHHHTTHHHHHHHH.TTTSTT CS
         Ank   2 GnTPLHlAatngkkriiklLL.hGAnln 28 
                 G T L  A + ++k+++kl + +GA+++
  KOO20813.1 137 GSTGLQTAMRKKHKECVKLCIqYGAEID 164
                 5666666778899*****99977**986 PP

>> ADAM_CR  ADAM cysteine-rich
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.4   1.9   1.9e-05     0.039      37     107 ..      83     158 ..      46     167 .. 0.74

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 1.9e-05
     ADAM_CR  37 daCyeelnskgdrfgnCgkekkkk..yvkcekedvlCGklqCenvkekpelkee.atviqtkiknkk..Ckgidve 107
                  +C + l  +g +    +++  ++  y+ c+k++v C ++ Ce ++++++ + + +t +qt +++k+  C+++ ++
  KOO20813.1  83 PSCLKLLIARGANLDTPNSQDGGTplYIACSKNNVECLRMLCEAGADVNKPRLDgSTGLQTAMRKKHkeCVKLCIQ 158
                 55665555555555444443333367*******************8777666555677777777433368887664 PP

>> Phospholip_A2_2  Phospholipase A2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.2     5e-05       0.1      17      72 ..      33      88 ..      19      97 .. 0.87

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 5e-05
                     TT---SSHHHHHHHHHHHT-SSEE-TT-EETTEE--SSS-EEBHHHHHHHHHHHHT CS
  Phospholip_A2_2 17 eedlGkeketdkCCreHdeceekiealetkygltnkklftlshCecdeefrkCLkk 72
                     +++ G++  + +CC  H +c + + + + + ++  k+ +t +  +c+e+  +CLk 
       KOO20813.1 33 TDEDGATPLLMACCYGHTSCVDVLLKANADPNVAGKHGITPVFFACQENHPSCLKL 88
                     566678888889******************************************86 PP

>> DUF4140  N-terminal domain of unknown function (DUF4140)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.0   0.0     0.068   1.4e+02      50      87 ..     185     223 ..     178     227 .. 0.83
   2 ?    7.2   4.9    0.0033       6.6      65      96 ..     281     320 ..     246     325 .. 0.61

  Alignments for each domain:
  == domain 1  score: 3.0 bits;  conditional E-value: 0.068
     DUF4140  50 ldvqvervpnreaeeee.lkalraeleeledelaalede 87 
                  d++ ++++   ++e++    l+ae ++l+++la+++++
  KOO20813.1 185 GDMNMKKSYLIGIFEQQeRLDLQAEHTKLKARLAEIDAA 223
                 688888999999999955999999999999999999865 PP

  == domain 2  score: 7.2 bits;  conditional E-value: 0.0033
     DUF4140  65 e........elkalraeleeledelaaledelaaaearla 96 
                 e         +++++ael ++e++l+++++++a a+++ a
  KOO20813.1 281 EddweaaerGVAQAEAELAQAEAQLTEAKAKAAKAREKVA 320
                 2555555542555555555555555555555555444433 PP

>> DUF3391  Domain of unknown function (DUF3391)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.0   9.6    0.0084        17      56     129 ..     247     323 ..     240     325 .. 0.51

  Alignments for each domain:
  == domain 1  score: 6.0 bits;  conditional E-value: 0.0084
     DUF3391  56 dksdeeelagl..dvpaaeaaeeakaa.eesaeleeekqerperleaere.eleraeklyeeakqlvrslfsdvrlgk 129
                 +++++++ +g+   +p++++ ++a+ +  e+ ++e+++++ ++   +  e el++ae++++eak+ +++  ++v + k
  KOO20813.1 247 ERTKSKKGKGKkgASPSEKKGKKAEDEpNEELAAEDDWEAAERGVAQA-EaELAQAEAQLTEAKAKAAKAREKVAAAK 323
                 444444444442222222222222222022222233333333333333.25**************9999888887766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (327 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1542  (0.0860059); expected 358.6 (0.02)
Passed bias filter:                      740  (0.0412739); expected 358.6 (0.02)
Passed Vit filter:                        98  (0.005466); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.59u 0.28s 00:00:00.87 Elapsed: 00:00:00.44
# Mc/sec: 2250.09
//
Query:       KOO20814.1  [L=430]
Description: dihydrodipicolinate synthase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.6e-86  289.0   0.0    3.5e-86  288.5   0.0    1.1  1  DHDPS           Dihydrodipicolinate synthetase family
    2.4e-11   43.9   0.2    6.3e-11   42.6   0.2    1.7  1  Saccharop_dh_N  LOR/SDH bifunctional enzyme conserved region


Domain annotation for each model (and alignments):
>> DHDPS  Dihydrodipicolinate synthetase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  288.5   0.0   3.9e-90   3.5e-86       3     266 ..      46     309 ..      44     324 .. 0.98

  Alignments for each domain:
  == domain 1  score: 288.5 bits;  conditional E-value: 3.9e-90
                 SEEEEE----B-TTSSB-HHHHHHHHHHHHHCT-SEEEESSCCCTGGGS-HHHHHHHHHHHHHHHTTSSEEEEE---SSHHHHHHHHHCCCCCT-SEEE CS
       DHDPS   3 sgiitalvtpfdedgkldkealrklieflinkgvdglvvaGttGEsatlsteekeqlveiaveaakgripviagvGsnstseaiklakkaeeaGadgvl 101
                 +g+++alvtp++ dg++d  +lrkl ++++ +g++g+v++GttGE++tls +e+++++  ++++++g+ p+i g+G  st + i ++k+a+  Gad++l
  KOO20814.1  46 AGSLVALVTPMKDDGTVDIPCLRKLLQWHVSEGTNGIVILGTTGEASTLSDDERAEVLAATRDEIGGKLPIIVGTGTISTTDTIAMTKQAKLFGADAAL 144
                 799************************************************************************************************ PP

                 EE---SS---HHHHHHHHHHHHHCHSS-EEEEE-HHHHSHHHHHHHHHHHHTSTTEEEEEE-SS-CTHHHHHHCCCSTTSEEEES-GGGHHHHHHTT-S CS
       DHDPS 102 avtPYYnkpsqeglyqhfkaiieatdlpvilYnvpsrtgadlspetvkrLaelenivgvKeavgdleevikikkevgkdlviysGddelllsalslGad 200
                 +vtPYY+kp+q+gl++hf +i+ a dlp++lYnvp+rtg+dls+et+  L+  + i g+K+a+gd ++v  +++ +++++ +ysG d+++ +++  G+d
  KOO20814.1 145 IVTPYYVKPTQAGLIKHFTTIADASDLPIVLYNVPGRTGVDLSVETTIVLSRHPMIRGLKDATGDNTRVAPMRAVCDDEFKLYSGEDAMARDYVLQGGD 243
                 *************************************************************************************************** PP

                 EEEESCHHCHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHCCCCSCCHHHHHHHHCTTSSSBB. CS
       DHDPS 201 GvisvtsniagermrqlikalkeGdlaeaaelnekllplikilfaepnvilvktalellGlvveat 266
                 Gvisvt+n+a++ +++++ a+k+G+ + a++  + l  l+ +lf+e n+i+vk+ l+++G v+ +t
  KOO20814.1 244 GVISVTANVAPKSVAKVMSAAKAGKRDVAELEDKPLAALHRDLFSEANPIPVKWCLHQMGRVAAPT 309
                 ************************************************************988765 PP

>> Saccharop_dh_N  LOR/SDH bifunctional enzyme conserved region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.6   0.2   7.1e-15   6.3e-11       2      74 ..     335     416 ..     334     429 .. 0.81

  Alignments for each domain:
  == domain 1  score: 42.6 bits;  conditional E-value: 7.1e-15
                     EEEEEEEXXTTSSHHHHHHHHHHHTTXEEEEEEEEX......XSST...TSXEEEEEEEEESSHHHHHHHHHHHHHHHHHSC CS
  Saccharop_dh_N   2 reveleGhliDsgilnkvldlileaggsfevlefev......Gkkk...kdtSyaelevsaedeevLeeileeltelgaelv 74 
                     r++ l+Ghl+Dsg++n++l++i++ gg+fe++ f+v      G+ +   k tS++ l+v+a ++e L++i ++l++l + + 
      KOO20814.1 335 RQLLLQGHLFDSGLINQALEIIEKRGGDFEITAFSVqpndqrGEFSfnfKRTSSVALTVMAVNTEGLDDITSRLQQLVNVIE 416
                     6788*******************************94443333322333679***********************9965554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (430 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       349  (0.0194657); expected 358.6 (0.02)
Passed bias filter:                      297  (0.0165653); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.50u 0.26s 00:00:00.76 Elapsed: 00:00:00.43
# Mc/sec: 3014.20
//
Query:       KOO20815.1  [L=613]
Description: actin binding [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    4.9e-18   65.9   0.0    1.6e-11   44.9   0.0    3.9  3  Filamin        Filamin/ABP280 repeat
    1.3e-06   28.6   0.1    1.3e-06   28.6   0.1    3.9  5  Invasin_D3     Invasin, domain 3
      0.001   18.6   0.0     0.0017   17.9   0.0    1.3  1  Neurexophilin  Neurexophilin
     0.0012   18.9   4.0       0.32   11.0   0.0    3.8  4  Big_1          Bacterial Ig-like domain (group 1)
  ------ inclusion threshold ------
       0.11   12.8   0.0        3.9    7.9   0.0    2.8  3  DUF5060        Domain of unknown function (DUF5060)
       0.12   12.2   0.0        1.8    8.5   0.0    2.6  3  BclA_C         BclA C-terminal domain
       0.42   11.2   2.7        4.8    7.9   0.0    3.8  4  YtkA           YtkA-like
        1.4    8.6  12.9      0.091   12.5   7.1    1.8  2  TAF4           Transcription initiation factor TFIID componen


Domain annotation for each model (and alignments):
>> Filamin  Filamin/ABP280 repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.2   0.0   0.00046         1      60     103 .]     137     186 ..      68     186 .. 0.73
   2 ?    5.9   0.0      0.01        23      17     102 ..     207     391 ..     189     392 .. 0.59
   3 !   44.9   0.0   7.1e-15   1.6e-11      18     101 ..     415     489 ..     395     491 .. 0.90

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.00046
                 .EEEEEEEE-SSSEEEEEE--SSSCEEEEEEEETT......CE-TTSSEE CS
     Filamin  60 ssvkievvdnedgtytvsYtpeepgtyrvsvkldg......khiggsPfd 103
                 +s++ + v +  g y+++Y  +e+g + ++v +d       ++ +gsPf+
  KOO20815.1 137 PSMPFQGVWRPGGEYEIRYMWKEAGHFDLHVWCDVegdgerQRLPGSPFR 186
                 266667777779*********************776777889******95 PP

  == domain 2  score: 5.9 bits;  conditional E-value: 0.01
                 E..ETTS-EEEEEEESSSTSCCCSTTS..EEEEE..ESSTS.......................................................... CS
     Filamin  17 s..vagesltFtvytkdakgeksevggdelqvrivtgsphgaatk...................................................... 59 
                     age ++Ft +++d+ g+++ +     + ++        +                                                        
  KOO20815.1 207 LkySAGERIEFTPQLRDQFGNPCAIVDRTSNSNL--------SGGsaaevimkemlaqhgdrigdramqamlkvadgiksfvkdpfgqasgwddqlnes 297
                 3567899999999999999998876332222333........111333344556666666666666666666666666666666666666677777777 PP

                 ..................................................EEEE..EEEE-SSSEEEEEE.--SSSCEEEEEEEETTCE-TTSSE CS
     Filamin  60 ....................................s.............svki..evvdnedgtytvsY.tpeepgtyrvsvkldgkhiggsPf 102
                                                     +             s++   + +d+  g ++v+  t++ +g y+ +  l+g +i+gsP 
  KOO20815.1 298 tptrglgspelftrrkvtgardssssslrrkasedsVtpeltgwvvgpkgSTPLllQRTDK-LGQFEVRNqTITLQGSYEAHFALNGVPIAGSPV 391
                 7777666666666666666666655555555544440444444445555533331133333.477877764778889999999999999999985 PP

  == domain 3  score: 44.9 bits;  conditional E-value: 7.1e-15
                 ETTS-EEEEEEESSSTSCCCSTTS..EEEEE..ESSTS.....EEEEEEEE-SSSEEEEEE--SSSCEEEEEEEETTCE-TTSS CS
     Filamin  18 vagesltFtvytkdakgeksevggdelqvrivtgsphgaatkssvkievvdnedgtytvsYtpeepgtyrvsvkldgkhiggsP 101
                  ++ +++ t ++ d +g+k+ +gg +++v++      ga    s+++ vvd++dgty  ++t++  g y+v+v++dg +++g P
  KOO20815.1 415 LVKLPYELTLHAVDRYGNKLSSGGARVEVKV-----IGA----SAPCTVVDHKDGTYSLHFTVNSTGSYQVEVRIDGLKVKGTP 489
                 5677999************************.....455....7899***********************************99 PP

>> Invasin_D3  Invasin, domain 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.6         6   1.3e+04      10      29 ..     113     132 ..     104     136 .. 0.52
   2 ?    0.8   0.0      0.27     6e+02      24      42 ..     217     235 ..     212     258 .. 0.69
   3 ?   -0.5   0.0      0.69   1.5e+03      32      46 ..     382     396 ..     348     410 .. 0.70
   4 !   28.6   0.1   5.7e-10   1.3e-06      23      88 ..     421     489 ..     417     495 .. 0.85
   5 ?   -2.6   0.2       3.1     7e+03      20      42 ..     539     562 ..     524     582 .. 0.46

  Alignments for each domain:
  == domain 1  score: -3.5 bits;  conditional E-value: 6
  Invasin_D3  10 spasivAdGkststltvtlk 29 
                 ++a + A  +++ ++ vt+k
  KOO20815.1 113 AKAAAEAQASAKLQVVVTAK 132
                 44444444444444444444 PP

  == domain 2  score: 0.8 bits;  conditional E-value: 0.27
  Invasin_D3  24 ltvtlkDangnpvsgltvt 42 
                  t +l+D++gnp +    t
  KOO20815.1 217 FTPQLRDQFGNPCAIVDRT 235
                 5779********4433333 PP

  == domain 3  score: -0.5 bits;  conditional E-value: 0.69
  Invasin_D3  32 ngnpvsgltvtfstt 46 
                 ng p++g  v+f+ +
  KOO20815.1 382 NGVPIAGSPVSFKVN 396
                 566777777777766 PP

  == domain 4  score: 28.6 bits;  conditional E-value: 5.7e-10
  Invasin_D3  23 tltvtlkDangnp..vsgltvtfsttsagtlsavtdngdGtytatLtattagtatitptvnG.vaiaat 88 
                  lt+ + D  gn    +g+ v+++   a +  +v d++dGty+  +t +++g++++++ ++G ++ +++
  KOO20815.1 421 ELTLHAVDRYGNKlsSGGARVEVKVIGASAPCTVVDHKDGTYSLHFTVNSTGSYQVEVRIDGlKVKGTP 489
                 59***********9556688***9776668889*****************************7554444 PP

  == domain 5  score: -2.6 bits;  conditional E-value: 3.1
  Invasin_D3  20 ststltvtlkDangnp...vsgltvt 42 
                 s++   +++k +n +p   +++  v+
  KOO20815.1 539 SQTASPLKAKSKNRKPsapTTN--VA 562
                 3444456666666666422333..32 PP

>> Neurexophilin  Neurexophilin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.9   0.0   7.6e-07    0.0017      78     107 ..     451     480 ..     430     520 .. 0.77

  Alignments for each domain:
  == domain 1  score: 17.9 bits;  conditional E-value: 7.6e-07
  Neurexophilin  78 vGkvvDhgnGtfsvffrhnstGqgnvsvsL 107
                       vvDh++Gt+s +f+ nstG  +v v +
     KOO20815.1 451 PCTVVDHKDGTYSLHFTVNSTGSYQVEVRI 480
                    4579******************98888754 PP

>> Big_1  Bacterial Ig-like domain (group 1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.6   0.2       5.4   1.2e+04       3      14 ..     119     130 ..     117     134 .. 0.74
   2 ?   -0.8   0.0      0.68   1.5e+03       9      21 ..     217     229 ..     213     241 .. 0.84
   3 !    6.3   0.2    0.0043       9.6      17      34 ..     382     399 ..     381     406 .. 0.85
   4 !   11.0   0.0   0.00014      0.32       8      64 .]     421     478 ..     419     478 .. 0.85

  Alignments for each domain:
  == domain 1  score: -3.6 bits;  conditional E-value: 5.4
       Big_1   3 Gvdtntltatvk 14 
                  +++++l+++v+
  KOO20815.1 119 AQASAKLQVVVT 130
                 577888888887 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 0.68
       Big_1   9 ltatvkDangnpv 21 
                 +t  ++D++gnp 
  KOO20815.1 217 FTPQLRDQFGNPC 229
                 566789*****96 PP

  == domain 3  score: 6.3 bits;  conditional E-value: 0.0043
       Big_1  17 ngnpvagatVtfsvsgga 34 
                 ng p+ag +V+f+v+++a
  KOO20815.1 382 NGVPIAGSPVSFKVNAAA 399
                 89************9965 PP

  == domain 4  score: 11.0 bits;  conditional E-value: 0.00014
       Big_1   8 tltatvkDangnpvagatVtfsvsg.galsassgtTdanGkatvtltstkagtvtvtA 64 
                 +lt +++D++gn ++     ++v   ga ++ +++  ++G+++ ++t    g+++v +
  KOO20815.1 421 ELTLHAVDRYGNKLSSGGARVEVKViGASAPCTVVDHKDGTYSLHFTVNSTGSYQVEV 478
                 699***********9555555555555666*************************975 PP

>> DUF5060  Domain of unknown function (DUF5060)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.9   0.0    0.0018       3.9      25      64 ..     123     164 ..     107     169 .. 0.77
   2 ?   -3.5   0.0       6.6   1.5e+04       7      22 ..     214     229 ..     213     235 .. 0.65
   3 ?    1.3   0.0       0.2   4.4e+02      48      68 ..     459     479 ..     453     481 .. 0.85

  Alignments for each domain:
  == domain 1  score: 7.9 bits;  conditional E-value: 0.0018
                 --EEEEEEET...TEEEEEE-EE-STTEEEEEE---S-EEEE CS
     DUF5060  25 velsatFtsp..sgksltvpGFYdGdgayrvrFaPdeeGeWt 64 
                  +l+++ t++  +  s+  +G +  +g+y++r++ +e+G+++
  KOO20815.1 123 AKLQVVVTAKaaTVPSMPFQGVWRPGGEYEIRYMWKEAGHFD 164
                 45556666655577788899***9999************975 PP

  == domain 2  score: -3.5 bits;  conditional E-value: 6.6
                 -EEEEEE.---SS-GG CS
     DUF5060   7 kfeltlkgtsetanPf 22 
                 ++e+t + + +++nP 
  KOO20815.1 214 RIEFTPQLRDQFGNPC 229
                 4566666667777776 PP

  == domain 3  score: 1.3 bits;  conditional E-value: 0.2
                 TTEEEEEE---S-EEEEEEEE CS
     DUF5060  48 dgayrvrFaPdeeGeWtYkts 68 
                 dg+y  +F+ + +G ++ +++
  KOO20815.1 459 DGTYSLHFTVNSTGSYQVEVR 479
                 589************997765 PP

>> BclA_C  BclA C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.7   0.0       4.8   1.1e+04      46      59 ..     149     162 ..     148     200 .. 0.63
   2 ?    0.1   0.0      0.31   6.9e+02      64      84 ..     377     397 ..     343     422 .. 0.64
   3 ?    8.5   0.0    0.0008       1.8      44      77 ..     458     489 ..     440     515 .. 0.76

  Alignments for each domain:
  == domain 1  score: -3.7 bits;  conditional E-value: 4.8
      BclA_C  46 GrYyisYqvnttaa 59 
                 G Y+i+Y+ + +  
  KOO20815.1 149 GEYEIRYMWKEAGH 162
                 88999998776555 PP

  == domain 2  score: 0.1 bits;  conditional E-value: 0.31
      BclA_C  64 lrllvngvavpgstvtpalst 84 
                 +   +ngv+++gs v+  +  
  KOO20815.1 377 AHFALNGVPIAGSPVSFKVNA 397
                 445567777777766555444 PP

  == domain 3  score: 8.5 bits;  conditional E-value: 0.0008
      BclA_C  44 eaGrYyisYqvnttaallvslrllvngvavpgst 77 
                 + G+Y++ ++vn t +  v++r  ++g +v+g+ 
  KOO20815.1 458 KDGTYSLHFTVNSTGSYQVEVR--IDGLKVKGTP 489
                 6799999999999998766555..5777777764 PP

>> YtkA  YtkA-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.7       1.3   2.9e+03      66      82 ..     148     164 ..      90     167 .. 0.63
   2 ?   -0.3   0.0      0.76   1.7e+03      54      84 ..     346     378 ..     328     380 .. 0.77
   3 ?   -2.6   0.0         4   8.9e+03      31      53 ..     382     404 ..     372     410 .. 0.76
   4 ?    7.9   0.0    0.0021       4.8      58      85 ..     451     478 ..     407     479 .. 0.79

  Alignments for each domain:
  == domain 1  score: -1.1 bits;  conditional E-value: 1.3
        YtkA  66 dGvYeaevnfsmeGtWq 82 
                 +G+Ye+++  +++G+  
  KOO20815.1 148 GGEYEIRYMWKEAGHFD 164
                 57777777777777665 PP

  == domain 2  score: -0.3 bits;  conditional E-value: 0.76
        YtkA  54 emttkvelke.sedGvYeae.vnfsmeGtWqvq 84 
                 + +t++ l+  ++ G++e++  +++ +G ++ +
  KOO20815.1 346 KGSTPLLLQRtDKLGQFEVRnQTITLQGSYEAH 378
                 45667766666799*****99*******99876 PP

  == domain 3  score: -2.6 bits;  conditional E-value: 4
        YtkA  31 ggkpVedadvkvefwmpameGme 53 
                 +g p+ +  v++++   a++G++
  KOO20815.1 382 NGVPIAGSPVSFKVNAAAPSGKN 404
                 67788888888888888877765 PP

  == domain 4  score: 7.9 bits;  conditional E-value: 0.0021
        YtkA  58 kvelkesedGvYeaevnfsmeGtWqvql 85 
                 + ++ + +dG Y++  + +  G +qv++
  KOO20815.1 451 PCTVVDHKDGTYSLHFTVNSTGSYQVEV 478
                 45667779******************97 PP

>> TAF4  Transcription initiation factor TFIID component TAF4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   7.1   4.1e-05     0.091     112     192 ..      48     125 ..      37     161 .. 0.83
   2 ?   -1.7   0.3      0.87   1.9e+03     194     230 ..     517     553 ..     492     575 .. 0.56

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 4.1e-05
        TAF4 112 tsdvrkqLrelaqkekeeeekrqakRieereglekaakdrskgedeeekklkaketakevq..keedekarhraANatAlaav 192
                 ++dvr+  +e+ +++kee+ek  a     +  +ek + +++ ++  +e+k++a+e +k+vq   ee +k  + aA a A+a +
  KOO20815.1  48 KKDVREDSKEIPELKKEEREKAIA-----TSVIEKLKAKKGGKDGGKESKEEAEERKKAVQaaAEEVAKVAKAAAEAQASAKL 125
                 6799999999999*****999999.....467777777667778888999999999999997677777888888888887755 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 0.87
        TAF4 194 eprk.Kkyswmsagsg.sgggksgaskssssggkglkgk 230
                 +pr+ K++   s+++    g+++ +++ s ++ k+ ++k
  KOO20815.1 517 KPRQlKRE--PSSATPtKDGAGMDSQTASPLKAKSKNRK 553
                 46776666..23333223333333333333333332233 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (613 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1461  (0.0814881); expected 358.6 (0.02)
Passed bias filter:                      735  (0.040995); expected 358.6 (0.02)
Passed Vit filter:                        98  (0.005466); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.72u 0.28s 00:00:01.00 Elapsed: 00:00:00.44
# Mc/sec: 4175.54
//
Query:       KOO20816.1  [L=407]
Description: hypothetical protein Ctob_000024, partial [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (407 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       564  (0.0314574); expected 358.6 (0.02)
Passed bias filter:                      445  (0.0248201); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.49u 0.23s 00:00:00.72 Elapsed: 00:00:00.39
# Mc/sec: 3091.88
//
Query:       KOO20817.1  [L=462]
Description: hypothetical protein Ctob_000019 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
  ------ inclusion threshold ------
        1.1    9.7   5.9       0.17   12.3   1.6    2.0  2  K-cyclin_vir_C  K cyclin, C terminal


Domain annotation for each model (and alignments):
>> K-cyclin_vir_C  K cyclin, C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.1      0.79   1.4e+04      56      82 ..     172     189 ..     165     198 .. 0.45
   2 ?   12.3   1.6   9.8e-06      0.17      32      79 ..     292     339 ..     262     366 .. 0.86

  Alignments for each domain:
  == domain 1  score: -3.5 bits;  conditional E-value: 0.79
  K-cyclin_vir_C  56 allvlaaviPqdahsggvvprlaeilG 82 
                     al +  a++ +         + a  +G
      KOO20817.1 172 ALAAKRAAVTE---------EAAADVG 189
                     33333333333.........3333333 PP

  == domain 2  score: 12.3 bits;  conditional E-value: 9.8e-06
  K-cyclin_vir_C  32 lvtkalvdPktGslPaslvaaagcallvlaaviPqdahsggvvprlae 79 
                      +++al   +  ++P sl+ aa   l  l+av+P+++   + +pr a+
      KOO20817.1 292 ALQQALHAARVAGVPLSLINAAVEHLTMLTAVVPPPTSLPASLPRTAS 339
                     577899999999**********99*************98999999886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (462 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       539  (0.030063); expected 358.6 (0.02)
Passed bias filter:                      295  (0.0164538); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.26s 00:00:00.74 Elapsed: 00:00:00.42
# Mc/sec: 3330.93
//
Query:       KOO20818.1  [L=748]
Description: zinc carboxypeptidase family protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.3e-37  128.6   0.0    3.6e-37  128.0   0.0    1.3  1  Methyltransf_PK  AdoMet dependent proline di-methyltransferas
    5.5e-18   65.3   0.7    1.1e-17   64.4   0.7    1.5  1  Pepdidase_M14_N  Cytosolic carboxypeptidase N-terminal domain
    3.6e-13   50.0   0.0    6.3e-13   49.2   0.0    1.3  1  Peptidase_M14    Zinc carboxypeptidase
      2e-08   34.8   0.0    1.1e-07   32.4   0.0    2.2  2  Methyltransf_11  Methyltransferase domain
      4e-08   33.8   0.1    8.9e-07   29.5   0.1    2.5  1  Methyltransf_25  Methyltransferase domain
    4.5e-06   26.6   0.0    8.1e-06   25.8   0.0    1.4  1  Methyltransf_23  Methyltransferase domain
    1.5e-05   25.6   0.0      6e-05   23.7   0.0    2.0  1  Methyltransf_12  Methyltransferase domain
  ------ inclusion threshold ------
      0.043   13.1   0.0      0.098   11.9   0.0    1.5  1  Methyltransf_2   O-methyltransferase domain
      0.083   13.9   0.0       0.23   12.5   0.0    1.8  1  Methyltransf_24  Methyltransferase domain
       0.89    9.9   3.1        2.5    8.5   3.1    1.7  1  Cytotoxic        Cytotoxic


Domain annotation for each model (and alignments):
>> Methyltransf_PK  AdoMet dependent proline di-methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  128.0   0.0     2e-40   3.6e-37       2     202 ..     453     691 ..     452     719 .. 0.84

  Alignments for each domain:
  == domain 1  score: 128.0 bits;  conditional E-value: 2e-40
  Methyltransf_PK   2 eeevyekaiaYWe.....sveadvdGvLGGygavskiDvkgsrkflkklkkeslp..gkrevkvaldcGaGiGrvtknlLlkllskvDlvepve 88 
                      +e++y++++aYWe     +  ++ dGv+ G+g ++++D+  s +f++  ++   p   +    +ald+GaGiGrv+  lLl+l ++vDlv+  +
       KOO20818.1 453 REQWYDRSKAYWEwdglhGKGKTNDGVMSGIGPLHDADIADSLAFITGGLQPIWPapFFFPDARALDVGAGIGRVAGALLLDLCGEVDLVDGSA 546
                      689********974433345689***********************998887766225677899****************************** PP

  Methyltransf_PK  89 kflekakeelae.....................ekkkvgkvyvvglqeftPe.egrYdliWiqWcvghLtDedlvaflkrckkalkpnGlivvk 160
                      + l++a+  l+e                     ++ +vg++ +  lq+f+P  ++ YdliWiqW    LtD+dl   l+ c +al+p+G+iv+k
       KOO20818.1 547 SHLHEARAALGEplgeplapgtsepiggrretiGRGRVGRYLCSDLQDFVPLaSHPYDLIWIQWTTMYLTDADLTRLLRDCREALAPGGVIVLK 640
                      ***********9******************999999***************83677************************************** PP

  Methyltransf_PK 161 envake.........ekdelDkeDssvtrseaklkklfkkagLklvaeelq 202
                      +nv  e         +  ++D+ D sv+r+ ++l  l+++agL +va+++ 
       KOO20818.1 641 DNVIDElkgpkglvdGRYVVDELDASVSRTRSHLLDLVNEAGLAIVASATA 691
                      **976422222222256799*************************987654 PP

>> Pepdidase_M14_N  Cytosolic carboxypeptidase N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.4   0.7     6e-21   1.1e-17      27     108 .]       6      98 ..       3      98 .. 0.88

  Alignments for each domain:
  == domain 1  score: 64.4 bits;  conditional E-value: 6e-21
  Pepdidase_M14_N  27 kDleksehrqWFyFrvsgar......gekltftienagkasypkgwkgykvvasydrkeWrrvd.teyd..ggtltithth..ekdtvyfAyF 108
                      ++le  +h+qWF Fr +  +         +t++i nag +sy kgw+g++v++s+d ++Wrrv+ t+yd   gtl++++ h  +++t  fAyF
       KOO20818.1   6 TELEGCNHMQWFAFRSTVLHpyaaadAWSTTYEIVNAGLCSYMKGWDGLEVCVSHDLQTWRRVPsTRYDapSGTLRWSWMHnaAQPTTFFAYF 98 
                      567899***********9888888888899***************************************55366665555555*********9 PP

>> Peptidase_M14  Zinc carboxypeptidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.2   0.0   3.5e-16   6.3e-13      12     186 ..     118     262 ..     109     323 .. 0.85

  Alignments for each domain:
  == domain 1  score: 49.2 bits;  conditional E-value: 3.5e-16
                    STTTEEEEEEEE-TTS-EEEEEEE-SSTTSTTST-CEEEEEE-SSTT-HHHHHHHHHHHHHHHHHT...TTSHHHHHHHHHEEEEEES-STHHHHH CS
  Peptidase_M14  12 ypdlvrlvsiGkSvegRplkvlkisssateaeegkpvvlidggiHarEwigsalllylleqLlsaY...gedeeikellddtdiyilpvlNPDGye 104
                     p l ++ s+G+S  gR+++v++++++           +i+ ++H++E ++  ++  ll  Ll        d  + ++l+ ++++++p++NPDG  
     KOO20818.1 118 APGL-EVSSLGQSLGGREIDVITVGTG-------PLHAWIIHRQHPGEPQAAFFAEGLLARLLGLErqgSIDGLTAQMLEAFTWHVVPSMNPDGGS 205
                    5555.899*****************87.......6889*************************75466566778899******************* PP

                    HHHHT-TTTTST-SBCTTSSSBS--GGGSSSSSTTSSSSBSSTTSTTBHHSSTT.SHHHHHHHHHHHHTTEEEEEEEEESSS CS
  Peptidase_M14 105 ysstedrlwrknrsnakessceGvDlnRnFpdlwnsegastspcsetyrgpapfsepetravlefiqkknivlfidlhsysq 186
                      +         r n +     G++lnR++       g+ ++p  e+         pe+ +vl+ +q++ + +f d+h+ + 
     KOO20818.1 206 AGHL--------RTNLA-----GANLNREWAPT----GSYEAPSLER--------SPEVYHVLRAMQRTGVDFFCDVHGDEG 262
                    ***5........9****.....******99444....5555555555........9**********************9765 PP

>> Methyltransf_11  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.8   0.0        10   1.8e+04      46      61 ..     327     341 ..     318     344 .. 0.63
   2 !   32.4   0.0   5.9e-11   1.1e-07       1      95 [.     518     638 ..     518     639 .. 0.87

  Alignments for each domain:
  == domain 1  score: -3.8 bits;  conditional E-value: 10
                      EETTEECCCTSS-TT- CS
  Methyltransf_11  46 efvvadaeklpfedns 61 
                      +++  ++e +pf+dn 
       KOO20818.1 327 DCLAVTLE-MPFKDNA 341
                      44444444.8999986 PP

  == domain 2  score: 32.4 bits;  conditional E-value: 5.9e-11
                      EEET-TTSHHHHHHH.HTTSEEEEEES-HHHHHHHHHHCCHHT-......................EEEETTEECCCT.SS-TT-EEEEEEES- CS
  Methyltransf_11   1 LdvGcGtGrlaeala.krgarvvgvDlskemlklakekaseegl......................kvefvvadaekl.pfednsfDlvvssev 70 
                      LdvG+G Gr+a al  + +++v  vD s+  l  a+++  e+                          +++++d++++ p++++ +Dl++++++
       KOO20818.1 518 LDVGAGIGRVAGALLlDLCGEVDLVDGSASHLHEARAALGEPLGeplapgtsepiggrretigrgrVGRYLCSDLQDFvPLASHPYDLIWIQWT 611
                      8**************7777*************99988887765467777777777776666666654456*******77*************** PP

                      CCC-..CCHHHHHHHHHHHEEEEEEEE CS
  Methyltransf_11  71 lhhv..edpekalkeiaRvLkpgGllv 95 
                       +++  +d+ ++l+ ++  L pgG++v
       KOO20818.1 612 TMYLtdADLTRLLRDCREALAPGGVIV 638
                      ****999*****************998 PP

>> Methyltransf_25  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.5   0.1     5e-10   8.9e-07       2      97 .]     518     635 ..     517     635 .. 0.82

  Alignments for each domain:
  == domain 1  score: 29.5 bits;  conditional E-value: 5e-10
                      EEET-TTSHHHHHHHCTSTSSEEEEEESSHHHHHHHHHHHHH...........TTT............TEEEEESBCCG.BSSSTTTEEEEEEE CS
  Methyltransf_25   2 LdlGcGtGrltlalakrlgkakvtgvDiseemleaareraee...........egl............nvefvqgdaed.lpfedgsfDlvvss 71 
                      Ld+G+G Gr++ al+  l  ++v  vD s++ l +ar+ + e           e +              ++++ d++d +p++++ +Dl++++
       KOO20818.1 518 LDVGAGIGRVAGALLLDL-CGEVDLVDGSASHLHEARAALGEplgeplapgtsE-PiggrretigrgrVGRYLCSDLQDfVPLASHPYDLIWIQ 609
                      9**********9988776.69****************77766666555545431.14444445565646788*****996699**********9 PP

                      STGGGSSHHHHHHHHHHHHHHEEEEE CS
  Methyltransf_25  72 galhhlsdedlekalkeiarvLkpgG 97 
                       + ++l+d+dl ++l+ ++++L pgG
       KOO20818.1 610 WTTMYLTDADLTRLLRDCREALAPGG 635
                      88999********************9 PP

>> Methyltransf_23  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.8   0.0   4.5e-09   8.1e-06      20     164 ..     511     687 ..     501     688 .. 0.80

  Alignments for each domain:
  == domain 1  score: 25.8 bits;  conditional E-value: 4.5e-09
  Methyltransf_23  20 lraggrvLdiGcGtGillevlrengf.svtgvDlspeaveiae................................kakkaqkdqfdeqeaaepq 80 
                       ++++r Ld+G+G G+++  l    + +v++vD s    ++a+                                   ++  +           
       KOO20818.1 511 FFPDARALDVGAGIGRVAGALLLDLCgEVDLVDGSASHLHEARaalgeplgeplapgtsepiggrretigrgrvgRYLCSDLQ----------- 593
                      47899****************9999**********988888888888888777777777777777766665444422233333........... PP

  Methyltransf_23  81 g.......kfdlI.vlrevlehvp.dppellrqiatllkpgGylllse.plaslkedrllldwlylvpagrhisffsarslkelleeaGlevve 164
                      +        +dlI +++ +++  + d+++llr  ++ l+pgG+++l + +  +lk  + l d +y v++ + +   ++++l +l++eaGl +v+
       KOO20818.1 594 DfvplashPYDLIwIQWTTMYLTDaDLTRLLRDCREALAPGGVIVLKDnVIDELKGPKGLVDGRYVVDELDASVSRTRSHLLDLVNEAGLAIVA 687
                      03333345*****6678888888888**********************6344567888899999*9999999999999*************997 PP

>> Methyltransf_12  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.7   0.0   3.4e-08     6e-05       1      99 []     518     637 ..     518     637 .. 0.91

  Alignments for each domain:
  == domain 1  score: 23.7 bits;  conditional E-value: 3.4e-08
  Methyltransf_12   1 LeiGcGtGsllralleklpdieytgvDispsaiedakeklakrennnnnnvelealdlldldgg....................ssfDlvvasn 74 
                      L++G+G G+++ all +    e+  vD s+s ++ a++ l +  ++  +  + e +    +  g                    + +Dl+++  
       KOO20818.1 518 LDVGAGIGRVAGALLLD-LCGEVDLVDGSASHLHEARAALGEPLGEPLAPGTSEPIGGRRETIGrgrvgrylcsdlqdfvplasHPYDLIWIQW 610
                      8*************999.89*************999999999999887777777776554444499***************************9 PP

  Methyltransf_12  75 vlhhl..kdirevldnirklLkpgGrl 99 
                      +  +l  +d+ ++l+ +r++L+pgG++
       KOO20818.1 611 TTMYLtdADLTRLLRDCREALAPGGVI 637
                      999999*******************86 PP

>> Methyltransf_2  O-methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   5.5e-05     0.098     129     171 ..     604     646 ..     587     683 .. 0.81

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 5.5e-05
                     SEEEEESSGGGS-HHHHHHHHHHHHHH--TT-EEEEEE----T CS
  Methyltransf_2 129 DaillkrvlhDwsdekcvklLkrvkkalpagGkvivveavlga 171
                     D+i +++     +d++ ++lL+++++al +gG +++ + v+++
      KOO20818.1 604 DLIWIQWTTMYLTDADLTRLLRDCREALAPGGVIVLKDNVIDE 646
                     999999999999********************99999888775 PP

>> Methyltransf_24  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   0.00013      0.23      46     105 ..     580     641 ..     521     642 .. 0.81

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 0.00013
  Methyltransf_24  46 glddrvrlikadseealaslaagsiDllfiDgghaa...eavledleallprlapggvvlfdD 105
                      g  ++ r +++d+++ ++  +  ++Dl++i     +   ++  + l+ +++ lapggv+++ D
       KOO20818.1 580 GRGRVGRYLCSDLQDFVPLAS-HPYDLIWIQWTTMYltdADLTRLLRDCREALAPGGVIVLKD 641
                      455667888999999999777.9********998887767788889**************987 PP

>> Cytotoxic  Cytotoxic
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.5   3.1    0.0014       2.5      28      50 ..     450     472 ..     438     478 .. 0.84

  Alignments for each domain:
  == domain 1  score: 8.5 bits;  conditional E-value: 0.0014
   Cytotoxic  28 GglRkRWkdkkgkiYeWDsqhGe 50 
                  + R++W d+++  +eWD  hG+
  KOO20818.1 450 AEQREQWYDRSKAYWEWDGLHGK 472
                 578******************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (748 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       307  (0.0171231); expected 358.6 (0.02)
Passed bias filter:                      271  (0.0151152); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.63u 0.26s 00:00:00.89 Elapsed: 00:00:00.44
# Mc/sec: 5128.44
//
Query:       KOO20819.1  [L=93]
Description: hypothetical protein Ctob_000013 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      0.006   16.3   0.0     0.0096   15.7   0.0    1.3  1  DivIC       Septum formation initiator
     0.0078   16.3   0.3     0.0093   16.1   0.3    1.1  1  ADIP        Afadin- and alpha -actinin-Binding
  ------ inclusion threshold ------
      0.014   15.4   0.1      0.017   15.1   0.1    1.2  1  OTCace_N    Aspartate/ornithine carbamoyltransferase, carbamo
      0.017   15.5   0.0      0.027   14.9   0.0    1.2  1  FlaC_arch   Flagella accessory protein C (FlaC)
      0.078   12.2   0.8      0.094   12.0   0.8    1.0  1  FmiP_Thoc5  Fms-interacting protein/Thoc5


Domain annotation for each model (and alignments):
>> DivIC  Septum formation initiator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.0   2.7e-06    0.0096      10      53 ..       2      45 ..       1      55 [. 0.90

  Alignments for each domain:
  == domain 1  score: 15.7 bits;  conditional E-value: 2.7e-06
                XXXXXXXXHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-XXX CS
       DivIC 10 ifgkkgllaykqlkqeiaalqaelaklkaeneeLeaevkdLksd 53
                +++++ l+a+ +l++   + ++e+a+l+a n++L + ++ Lk++
  KOO20819.1  2 WMVNRELRARTSLEAAASRFEKENASLQASNKRLGSDLEMLKDT 45
                889999*********************************99765 PP

>> ADIP  Afadin- and alpha -actinin-Binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.3   2.6e-06    0.0093      49     121 ..       5      77 ..       3      91 .. 0.88

  Alignments for each domain:
  == domain 1  score: 16.1 bits;  conditional E-value: 2.6e-06
        ADIP  49 drdleqreslnetirkleaeierlqskierlktqleqlerelalvqakerqlekklktleqklknekeelqrl 121
                  r+l++r+sl++  ++ e e+++lq++ +rl   le l+  +    ++  +   +l+ l+++ k+e +  + l
  KOO20819.1   5 NRELRARTSLEAAASRFEKENASLQASNKRLGSDLEMLKDTIGMIGNRGEDWLESLRLLHKAQKRENDRHALL 77 
                 5999***************************************999999999999999999999998877665 PP

>> OTCace_N  Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.1   0.1   4.8e-06     0.017      49     100 ..       6      52 ..       1      75 [. 0.84

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 4.8e-06
                 --HHHHHHHHHHHHHTTSEEEEEESTTTSCTTTGGSTTSSCHHHHHHHHHHH CS
    OTCace_N  49 pStRTrvSfevAakrlGgkvlslseaediqlssvskgrkEsleDtarvlsry 100
                 + +R r+S e+Aa+r   +  sl+++ + +l+  s    E l+Dt+ ++++ 
  KOO20819.1   6 RELRARTSLEAAASRFEKENASLQAS-NKRLG--SD--LEMLKDTIGMIGNR 52 
                 678*********************55.66665..34..5*********9875 PP

>> FlaC_arch  Flagella accessory protein C (FlaC)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.9   0.0   7.4e-06     0.027       4      39 ..      13      48 ..      12      52 .. 0.92

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 7.4e-06
   FlaC_arch  4 elEnklsklsteletvkkeneelsksveelkenVkd 39
                +lE   s+++ e ++++++n+ l +++e+lk+++ +
  KOO20819.1 13 SLEAAASRFEKENASLQASNKRLGSDLEMLKDTIGM 48
                68999999*************************965 PP

>> FmiP_Thoc5  Fms-interacting protein/Thoc5
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.8   2.6e-05     0.094      98     170 ..       5      78 ..       3      80 .. 0.91

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 2.6e-05
  FmiP_Thoc5  98 ewEleqRkelaeqlkeleekkkkleqeieekkkfLssLppkLkslkkatkplqealglplt.kerkqhelaslL 170
                 + El+ R +l+++ +  e+++ +l++ ++   + L+ L++++  + +  +   e+l l ++ ++r+++++a lL
  KOO20819.1   5 NRELRARTSLEAAASRFEKENASLQASNKRLGSDLEMLKDTIGMIGNRGEDWLESLRLLHKaQKRENDRHALLL 78 
                 67******************************************************998886777777776665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (93 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       612  (0.0341346); expected 358.6 (0.02)
Passed bias filter:                      444  (0.0247643); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.37u 0.26s 00:00:00.63 Elapsed: 00:00:00.40
# Mc/sec: 699.27
//
Query:       KOO20820.1  [L=670]
Description: udp-n-acetylglucosamine diphosphorylase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    3.8e-41  141.1   0.0    5.4e-41  140.6   0.0    1.1  1  UDPGP         UTP--glucose-1-phosphate uridylyltransferase
    5.2e-28   96.7   4.7    7.2e-09   36.1   0.2    3.8  3  WD40          WD domain, G-beta repeat
      2e-07   30.3   0.5       0.12   11.3   0.1    3.1  3  Ge1_WD40      WD40 region of Ge1, enhancer of mRNA-decapping 
    5.2e-06   26.3   0.1        3.8    7.6   0.0    3.6  3  PD40          WD40-like Beta Propeller Repeat
      8e-06   26.1   0.2       0.64   10.4   0.0    3.4  3  ANAPC4_WD40   Anaphase-promoting complex subunit 4 WD40 domai
    0.00024   21.5   0.0    0.00094   19.6   0.0    2.1  1  NTP_transf_3  MobA-like NTP transferase domain
  ------ inclusion threshold ------
      0.013   13.9   0.0        1.7    6.9   0.0    2.3  2  Frtz          WD repeat-containing and planar cell polarity e
      0.044   13.1   0.4        3.8    6.7   0.1    2.4  2  Nbas_N        Neuroblastoma-amplified sequence, N terminal


Domain annotation for each model (and alignments):
>> UDPGP  UTP--glucose-1-phosphate uridylyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  140.6   0.0   2.4e-44   5.4e-41      17     337 ..     251     604 ..     242     611 .. 0.86

  Alignments for each domain:
  == domain 1  score: 140.6 bits;  conditional E-value: 2.4e-44
       UDPGP  17 kqekidwdkieplpeeevvdyedlkekeeekkell....nklavlkLnGglGtsmGckgpKslieVr..dgktfLdlivqqie.........elnkkyn 100
                 + +++  +++ep ++e++ d  + ++ + +++ l     + +a l L+Gg+Gt++G+k pK+ +++   +gk++++  +++i+           +++ +
  KOO20820.1 251 NAQTVADKQVEPFKAERLADLPEAEAVALRERGLSmiarSEVAALLLAGGQGTRLGIKIPKGCYDIGlpSGKSLFQYHAERIRkvkqlaaahAGKREAD 349
                 34678889999999999888777733333333322445699**************************99**************999999997788999* PP

       UDPGP 101 vdvPlvlmnSfnTdedtekilk..kykk.kkvdiltfnqsryPriskesllpvekkakkeekeewyPpGhGdlyesLknsglld.kllaeGkeyiFvsn 195
                 v++P+++m+S  Td+dt+ +++   +++  + ++++f q+ +P ++ e +l+++         +++P G+G+ y sL +sgll+ +l a+G   iF   
  KOO20820.1 350 VRLPFLIMTSDATDSDTRAFFRqhAFFGlPEDQVHFFAQGALPCLTPEGKLILDAPGL----LAMAPNGNGGCYVSLRDSGLLEqQLDASGVTSIFQFG 444
                 **********************5545667899*********************98874....9********************735889********** PP

       UDPGP 196 iDN.lgatvDlkilnllvekkaeflmevtektradvkgGtlieyegklrlleiaqvpkehveefksvkkfkifntnni...winlkalkrlvee...k. 286
                 +DN l  ++D+++++++  ++a+++ + + k  a + +G+++   g+  ++e++++ +++++e k+++ + +f    i   ++++++lk+++ +     
  KOO20820.1 445 VDNvLCHVADPTFVGFCSARHADCASKTVPKRDAHEPVGVVALAGGRPAVVEYSEI-SREMAEAKDAHGRLLFGDAHIcvnFFSVPFLKSFCARlgpFg 542
                 ********************************************************.8999*************9999999999******996643332 PP

       UDPGP 287 .elkleiivnk.ktldegekviqletavgaaiksF........kkavginVpR.srflpvkt 337
                  +l l+++++k  ++d + +       +g++++ F        k++ +++V R ++f pvk+
  KOO20820.1 543 iQLPLHVAHKKiPYTDASGTRRTPTSNNGIKLELFifdtfpfaKQMAALQVARdEEFAPVKN 604
                 2444555555544555333356677889999999999999999**********899*****8 PP

>> WD40  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.4   0.1   4.8e-11   1.1e-07       8      38 .]      33      64 ..      27      64 .. 0.93
   2 !   27.9   0.0   1.3e-09   2.9e-06       8      38 .]      76     107 ..      70     107 .. 0.89
   3 !   36.1   0.2   3.2e-12   7.2e-09       8      38 .]     119     150 ..     112     150 .. 0.89

  Alignments for each domain:
  == domain 1  score: 32.4 bits;  conditional E-value: 4.8e-11
                ESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40  8 tGH.ssvtslafspdgawlasGsdDgtvriWd 38
                ++H +sv s+afspdg+ ++sGs+Dgt ++Wd
  KOO20820.1 33 SAHsGSVLSVAFSPDGTKIVSGSEDGTFKVWD 64
                589777*************************9 PP

  == domain 2  score: 27.9 bits;  conditional E-value: 1.3e-09
                 ESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40   8 tGH.ssvtslafspdgawlasGsdDgtvriWd 38 
                  +H +++ s+afspdg+ ++sGs D+t+++Wd
  KOO20820.1  76 NAHsFNIPSVAFSPDGTKIVSGSGDQTIKVWD 107
                 57955599**************99*******9 PP

  == domain 3  score: 36.1 bits;  conditional E-value: 3.2e-12
                 ESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40   8 tGH.ssvtslafspdgawlasGsdDgtvriWd 38 
                  +H + v+s+afspdg+ ++sGs+D+t+++Wd
  KOO20820.1 119 NAHsGTVYSVAFSPDGTKIVSGSWDKTIKVWD 150
                 489555*************************9 PP

>> Ge1_WD40  WD40 region of Ge1, enhancer of mRNA-decapping protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.3   0.1   5.3e-05      0.12     185     215 ..      33      64 ..      19      74 .. 0.86
   2 !    6.2   0.0     0.002       4.4     187     214 ..      78     106 ..      69     112 .. 0.88
   3 !    9.5   0.0   0.00019      0.44     185     217 ..     119     152 ..     108     162 .. 0.85

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 5.3e-05
    Ge1_WD40 185 eehs.liveaafspdGtalatasedGevkffq 215
                 + hs  + + afspdGt +   sedG+ k + 
  KOO20820.1  33 SAHSgSVLSVAFSPDGTKIVSGSEDGTFKVWD 64 
                 566668999******************99985 PP

  == domain 2  score: 6.2 bits;  conditional E-value: 0.002
    Ge1_WD40 187 hs.liveaafspdGtalatasedGevkff 214
                 hs +i + afspdGt +   s d ++k +
  KOO20820.1  78 HSfNIPSVAFSPDGTKIVSGSGDQTIKVW 106
                 55578899*******************98 PP

  == domain 3  score: 9.5 bits;  conditional E-value: 0.00019
    Ge1_WD40 185 eehs.liveaafspdGtalatasedGevkffqvy 217
                 + hs ++ + afspdGt +   s d ++k + + 
  KOO20820.1 119 NAHSgTVYSVAFSPDGTKIVSGSWDKTIKVWDMV 152
                 567668999*********************9875 PP

>> PD40  WD40-like Beta Propeller Repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.9   0.0    0.0027       6.1      14      24 ..      42      52 ..      30      52 .. 0.83
   2 !    7.6   0.0    0.0017       3.8       7      24 ..      78      95 ..      73      95 .. 0.75
   3 !    7.5   0.0    0.0018       4.1      12      24 ..     126     138 ..     119     138 .. 0.80

  Alignments for each domain:
  == domain 1  score: 6.9 bits;  conditional E-value: 0.0027
                EEE-TTSSEEE CS
        PD40 14 PsfSPDGkrla 24
                 +fSPDG++++
  KOO20820.1 42 VAFSPDGTKIV 52
                59*******96 PP

  == domain 2  score: 7.6 bits;  conditional E-value: 0.0017
                SSS.EEEEEE-TTSSEEE CS
        PD40  7 tpgnegaPsfSPDGkrla 24
                +++n+ + +fSPDG++++
  KOO20820.1 78 HSFNIPSVAFSPDGTKIV 95
                556666779*******96 PP

  == domain 3  score: 7.5 bits;  conditional E-value: 0.0018
                 EEEEE-TTSSEEE CS
        PD40  12 gaPsfSPDGkrla 24 
                 ++ +fSPDG++++
  KOO20820.1 126 YSVAFSPDGTKIV 138
                 5679*******96 PP

>> ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.4   0.0   0.00056       1.3      28      68 ..      27      66 ..      15      75 .. 0.82
   2 !   10.4   0.0   0.00028      0.64      33      89 ..      74     130 ..      61     133 .. 0.79
   3 !    6.0   0.1    0.0064        14      34      71 ..     118     155 ..     112     178 .. 0.76

  Alignments for each domain:
  == domain 1  score: 9.4 bits;  conditional E-value: 0.00056
  ANAPC4_WD40 28 rvwtleedkedsevrsLaWkpdgklLavaysdgevrlldae 68
                 rv +  +++++++v s+a++pdg+ ++ + +dg+ ++ d+ 
   KOO20820.1 27 RVAEK-ASAHSGSVLSVAFSPDGTKIVSGSEDGTFKVWDSD 66
                 44444.788999***********************999976 PP

  == domain 2  score: 10.4 bits;  conditional E-value: 0.00028
  ANAPC4_WD40  33 eedkedsevrsLaWkpdgklLavaysdgevrlldaesgkvvhslsvksekavtclgW 89 
                  + ++++ ++ s+a++pdg+ ++ +  d ++++ d+ + +++++ + +++ +v ++ +
   KOO20820.1  74 KPNAHSFNIPSVAFSPDGTKIVSGSGDQTIKVWDSDKLELLSEKTNAHSGTVYSVAF 130
                  5667778999****************************9998877666656776665 PP

  == domain 3  score: 6.0 bits;  conditional E-value: 0.0064
  ANAPC4_WD40  34 edkedsevrsLaWkpdgklLavaysdgevrlldaesgk 71 
                  +++++++v s+a++pdg+ ++ +  d ++++ d+ +  
   KOO20820.1 118 TNAHSGTVYSVAFSPDGTKIVSGSWDKTIKVWDMVKWS 155
                  5678899************************9987644 PP

>> NTP_transf_3  MobA-like NTP transferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.6   0.0   4.2e-07   0.00094       1      41 [.     294     337 ..     294     370 .. 0.83

  Alignments for each domain:
  == domain 1  score: 19.6 bits;  conditional E-value: 4.2e-07
                   EEEEEESS-TTTTT..THHHHCC...CCCCHHHHHHHHHCTT.-CE CS
  NTP_transf_3   1 aviLAGGrSsRmgg..dKallpl...ggkpllervldalraagvde 41 
                   a++LAGG+++R+g   +K  +++    gk+l++++++++r+++  +
    KOO20820.1 294 ALLLAGGQGTRLGIkiPKGCYDIglpSGKSLFQYHAERIRKVK--Q 337
                   689**********559*******9999*************983..3 PP

>> Frtz  WD repeat-containing and planar cell polarity effector protein Fritz
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.4   0.0    0.0043       9.6     250     289 ..      27      66 ..      15      74 .. 0.82
   2 ?    6.9   0.0   0.00076       1.7     262     332 ..      82     155 ..      77     181 .. 0.73

  Alignments for each domain:
  == domain 1  score: 4.4 bits;  conditional E-value: 0.0043
        Frtz 250 rvavtsiPlraqvislafnpdedkLllGceDssviLydee 289
                 rva         v s+af+pd  k++ G+eD++  ++d++
  KOO20820.1  27 RVAEKASAHSGSVLSVAFSPDGTKIVSGSEDGTFKVWDSD 66 
                 55555555567899*******************9999986 PP

  == domain 2  score: 6.9 bits;  conditional E-value: 0.00076
        Frtz 262 vislafnpdedkLllGceDssviLydeerkitklvkaev...vPsliswhpdsaillvasergelqifDlaLsp 332
                 + s+af+pd  k++ G+ D+++ ++d+++   +  k++    +   +++ pd++ ++ +s    ++++D+   +
  KOO20820.1  82 IPSVAFSPDGTKIVSGSGDQTIKVWDSDKLELLSEKTNAhsgTVYSVAFSPDGTKIVSGSWDKTIKVWDMVKWS 155
                 66899999999999999999999999986443333444311134567899999999999999999999997555 PP

>> Nbas_N  Neuroblastoma-amplified sequence, N terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.0   0.0     0.011        25     223     261 ..      30      68 ..       6      79 .. 0.78
   2 ?    6.7   0.1    0.0017       3.8     218     263 ..     110     156 ..      90     167 .. 0.79

  Alignments for each domain:
  == domain 1  score: 4.0 bits;  conditional E-value: 0.011
      Nbas_N 223 srkaeekdgvfkmslspdgtllavihfsgklsiwdipsl 261
                  + +     v+ +++spdgt++      g + +wd  +l
  KOO20820.1  30 EKASAHSGSVLSVAFSPDGTKIVSGSEDGTFKVWDSDAL 68 
                 444555667999**********************98776 PP

  == domain 2  score: 6.7 bits;  conditional E-value: 0.0017
      Nbas_N 218 slklysrkaeekdg.vfkmslspdgtllavihfsgklsiwdipslkq 263
                 +l+l s k++ + g v+ +++spdgt++    +   + +wd+    +
  KOO20820.1 110 KLELLSEKTNAHSGtVYSVAFSPDGTKIVSGSWDKTIKVWDMVKWSR 156
                 57777877666655499************************976554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (670 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       410  (0.022868); expected 358.6 (0.02)
Passed bias filter:                      389  (0.0216967); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.63u 0.26s 00:00:00.89 Elapsed: 00:00:00.41
# Mc/sec: 4872.20
//
Query:       KOO20821.1  [L=616]
Description: ATP-dependent DNA helicase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
      3e-13   49.9   0.0    5.8e-13   49.0   0.0    1.5  1  DEAD          DEAD/DEAH box helicase
      7e-10   39.2   0.0    1.6e-09   38.1   0.0    1.6  1  Helicase_C    Helicase conserved C-terminal domain
    4.5e-09   36.9   4.5    4.5e-09   36.9   4.5    2.0  2  RecQ_Zn_bind  RecQ zinc-binding


Domain annotation for each model (and alignments):
>> DEAD  DEAD/DEAH box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.0   0.0   9.6e-17   5.8e-13       3     171 ..      25     207 ..      23     212 .. 0.75

  Alignments for each domain:
  == domain 1  score: 49.0 bits;  conditional E-value: 9.6e-17
                 HHHHHHHHHHTTCEEEEEESTTSSHHHHHHHHHHHHHHHSTTSTS-EEEEEESSHHHHHHHHHHHHHHTTTST..........SEEEEEETTSSHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..........xxxxxxxxxxxxxxxx RF
        DEAD   3 iQaeaiplilgggdvlvaaeTGsGKTlaflipvlqivyetkgktgpkalivePtreLaeqtlnnlkkfkkyid..........lrvlliiggvaardql 91 
                  Q+ ++  il+++dv+v  +TG GK+l+f++p++  +      +   +++v+P+ +L++++++ l +  + +d          l+  + +g   a+   
  KOO20821.1  25 AQRDIVIDILDDKDVFVLLPTGGGKSLCFQLPAV--L------SYGVTIVVCPLLALMQDQVQALVRGADAADpalrgvpatfLSSTAKVGH--ANAVF 113
                 68999999**************************..2......34589*****************999998777766665444333333442..22334 PP

                 HHH......HTT....CSEEEEEHHHHHHHH....HCTSSHCTTEEE...EEEETHHHHHHT..TTHHHHHHHHHHSHHHCTTSTTTSEEEEEESSBS. CS
                 xxx......xxx....xxxxxxxxxxxxxxx....xxxxxxxxxxxx...xxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx. RF
        DEAD  92 skl......dng....vdivvgtpgrlddll....stgklnlsqvrf...lVlDEadrlldq..gfsdfinrilnqlpqitcdgklqrqvivlSATlp. 170
                 ++l      d g    +++++ tp++l++        +kl   q r+   +V+DEa++++ +  +f++++++ l  l+q     +    +++l+AT++ 
  KOO20821.1 114 ADLergtygD-GqepiTKCLYVTPEQLASSGrlrsALQKLASCQPRLlarIVVDEAHCVSGWghDFRPDYKE-LGGLRQLLPGVP----IVALTATATa 206
                 4443334442.146899*******999986655542233333333444559***********999*******.889989999888....*******984 PP

                 H CS
                 x RF
        DEAD 171 k 171
                 k
  KOO20821.1 207 K 207
                 4 PP

>> Helicase_C  Helicase conserved C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.1   0.0   2.6e-13   1.6e-09      10     110 ..     262     366 ..     253     367 .. 0.85

  Alignments for each domain:
  == domain 1  score: 38.1 bits;  conditional E-value: 2.6e-13
                 HHHTTTTSEEEEEESSHHHHHH.HHHHHHHTTSTEEEESTTSTHHHHHHHHHHHH....TTSSSEEEESGGGTSSSTSTTESEEEESSSSSSHHHHHHH CS
  Helicase_C  10 lkleeeggkilifvntidrlek.vklllekkgikvavlhgelpqnereeileqfn....kgesdvLiatdvaerGidipkvnlVinfdlprnvtsyiqr 103
                 +k+   +   ++++ ++ + ek +++ll + g+++ ++h+ ++++ r+++ +++     +g + v+ at ++++Gid  +v++V ++ lp++++ + q 
  KOO20821.1 262 IKTWPPRTCGIVYCLSQADTEKyCDVLL-HAGLSAGAYHAGMSASGRRAAQSAWMrgeaAGGFAVMCATIAMGMGIDQSCVRFVAHVCLPKSLEALYQE 359
                 4555566777999999999987766663.668****************99999975666777************************************* PP

                 HTTSSST CS
  Helicase_C 104 iGRtgRa 110
                 +GR+gR 
  KOO20821.1 360 SGRAGRD 366
                 ******6 PP

>> RecQ_Zn_bind  RecQ zinc-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.1      0.67     4e+03       8      36 ..     235     263 ..     212     285 .. 0.77
   2 !   36.9   4.5   7.5e-13   4.5e-09       2      66 .]     379     450 ..     378     450 .. 0.92

  Alignments for each domain:
  == domain 1  score: -1.4 bits;  conditional E-value: 0.67
  RecQ_Zn_bind   8 rrlieqseesekekeaelekleamlayce 36 
                   r+ ++++  ++ke+ ae+    +++ay +
    KOO20821.1 235 RYEVRRKAPKDKERSAEQAACAQLVAYIK 263
                   44455556667777777777888888874 PP

  == domain 2  score: 36.9 bits;  conditional E-value: 7.5e-13
  RecQ_Zn_bind   2 qDvsrlrrlieqseesekekeaelekleamlaycentte.CrrkllleyFgeeaaeeeC......gnCDnCl 66 
                   +D+ r+ ++ ++++++ ++k+++ e+ +++ ayce+++  Crr+ lle+Fge a+ + C      g CD+C+
    KOO20821.1 379 KDYARVVHMCRMGKGTRAAKAKDKERAKQVKAYCEASDGcCRRVSLLEHFGEVASAQLCrfeghsGMCDVCA 450
                   79********99999999*****************9876489**********99999**99987777****5 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (616 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       582  (0.0324614); expected 358.6 (0.02)
Passed bias filter:                      365  (0.0203581); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.57u 0.27s 00:00:00.84 Elapsed: 00:00:00.44
# Mc/sec: 4173.30
//
Query:       KOO20822.1  [L=899]
Description: hypothetical protein Ctob_000021 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (899 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2630  (0.14669); expected 358.6 (0.02)
Passed bias filter:                      458  (0.0255452); expected 358.6 (0.02)
Passed Vit filter:                       211  (0.0117686); expected 17.9 (0.001)
Passed Fwd filter:                        64  (0.00356964); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 2.92u 0.49s 00:00:03.41 Elapsed: 00:00:00.69
# Mc/sec: 3910.59
//
Query:       KOO20823.1  [L=272]
Description: hypothetical protein Ctob_000022 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
     0.0017   17.3  13.9     0.0037   16.2  13.9    1.6  1  Spc7             Spc7 kinetochore protein
  ------ inclusion threshold ------
      0.023   14.8   8.2      0.023   14.8   8.2    3.9  5  TPR_MLP1_2       TPR/MLP1/MLP2-like protein
      0.047   12.4  25.6       0.46    9.1  25.6    2.2  1  WEMBL            Weak chloroplast movement under blue light
       0.12   10.9   0.7       0.15   10.5   0.7    1.1  1  LCD1             DNA damage checkpoint protein
       0.14   11.3   3.6        4.5    6.4   2.3    2.2  2  Phage_HK97_TLTM  Tail length tape measure protein
       0.17   11.9  13.7        1.9    8.6   0.8    3.5  4  SNARE            SNARE domain
       0.23   11.5  20.1      0.032   14.2  11.3    2.6  3  CENP-F_leu_zip   Leucine-rich repeats of kinetochore protein 
       0.64    9.7  14.4      0.024   14.4   2.9    2.8  3  DUF4201          Domain of unknown function (DUF4201)
       0.96    7.5   9.3        1.5    6.9   9.3    1.2  1  EzrA             Septation ring formation regulator, EzrA
        1.3    8.1  10.8         28    3.7  10.8    2.8  1  BAR_2            Bin/amphiphysin/Rvs domain for vesicular tra
        1.5    9.2  21.1       0.77   10.2  12.3    2.3  2  Fez1             Fez1
        3.2    7.1  18.5        1.8    8.0  13.5    2.2  2  Golgin_A5        Golgin subfamily A member 5
        3.5    7.6  20.2        4.2    7.4  13.8    3.5  3  YscO-like        YscO-like protein
          4    7.9  26.6        6.4    7.2   9.3    3.2  3  CENP-H           Centromere protein H (CENP-H)
        4.2    7.8  21.8       0.88   10.0   3.6    3.9  2  DUF2564          Protein of unknown function (DUF2564)
        4.2    7.4   9.4         14    5.8   2.4    3.1  2  COG2             COG (conserved oligomeric Golgi) complex com
        4.5    7.9  24.0       0.18   12.5   7.9    3.9  4  HIP1_clath_bdg   Clathrin-binding domain of Huntingtin-intera
          7    5.7  12.1       0.96    8.6   3.2    2.3  3  DLP_helical      Dynamin-like helical domain
        7.4    6.6  14.4         27    4.7  14.3    1.9  1  DUF1640          Protein of unknown function (DUF1640)
        9.3    6.4  12.3       0.79    9.8   1.6    3.0  3  BRE1             BRE1 E3 ubiquitin ligase


Domain annotation for each model (and alignments):
>> Spc7  Spc7 kinetochore protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2  13.9   4.1e-06    0.0037     148     258 ..      33     150 ..      11     164 .. 0.65

  Alignments for each domain:
  == domain 1  score: 16.2 bits;  conditional E-value: 4.1e-06
        Spc7 148 legleedkelLekqeeeldellpeleeekaeleeeleklqeaaeeles......id.keeLeelreelaelkaeieekkkelaelqeqleeleekieel 239
                  ++l + +++L++  + +++l+ el+ e+++  e  ++lq+ + e  +         ++e++++r el+++  e+e  +++ ++ +++le+ +++ +++
  KOO20823.1  33 TAKLSHAQDQLARAHAHASDLVRELTLERERSAELTRQLQRSEPERRDrdrfeiERlRAEVHSARTELETARFELETARRDASQARTELETARQDASQA 131
                 567888899999999999999999988877555555555554444444111221334556666666666666666666666666666666666666666 PP

        Spc7 240 keqkseleeeiaeaervle 258
                 +++ +++++e++ a+r   
  KOO20823.1 132 RTELETARTELETARRDAS 150
                 6666666666666666555 PP

>> TPR_MLP1_2  TPR/MLP1/MLP2-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.8  14.5     0.063        57      30     114 ..      28     113 ..       3     115 .. 0.56
   2 ?   14.8   8.2   2.5e-05     0.023      65     117 ..      85     137 ..      80     142 .. 0.53
   3 ?   11.5   6.1   0.00027      0.24      60      96 ..     115     151 ..     112     161 .. 0.58
   4 ?    1.1   0.0      0.42   3.8e+02      29      59 ..     195     225 ..     188     229 .. 0.83
   5 ?   -2.9   0.1       7.3   6.5e+03      79      93 ..     244     258 ..     238     263 .. 0.50

  Alignments for each domain:
  == domain 1  score: 3.8 bits;  conditional E-value: 0.063
  TPR_MLP1_2  30 dlekqaeiakeaqqkYerelvkhaedvkelqalreelnelkaeiaelk.aeaesakaeleeseesweeqkeelekelselekried 114
                  + + ++ +++aq++ +r   + ++ v+el+  re+++el+ +++  + +++++ + e+e+ +++ ++ ++ele+   ele+ + d
  KOO20823.1  28 AVAAATAKLSHAQDQLARAHAHASDLVRELTLERERSAELTRQLQRSEpERRDRDRFEIERLRAEVHSARTELETARFELETARRD 113
                 34455555666666666666666666666666666666666666666523344555566666666666666666666666555544 PP

  == domain 2  score: 14.8 bits;  conditional E-value: 2.5e-05
  TPR_MLP1_2  65 elnelkaeiaelkaeaesakaeleeseesweeqkeelekelselekriedlne 117
                 e+++l+ae++++++e+e+a+ ele+++   ++ ++ele+  +++ + +++l++
  KOO20823.1  85 EIERLRAEVHSARTELETARFELETARRDASQARTELETARQDASQARTELET 137
                 44555555555555555555555555555555555555555555555555543 PP

  == domain 3  score: 11.5 bits;  conditional E-value: 0.00027
  TPR_MLP1_2  60 qalreelnelkaeiaelkaeaesakaeleeseeswee 96 
                 +++r+el++++++++++++e+e+a++ele+++   ++
  KOO20823.1 115 SQARTELETARQDASQARTELETARTELETARRDASQ 151
                 4556666666666666666666666666655554444 PP

  == domain 4  score: 1.1 bits;  conditional E-value: 0.42
  TPR_MLP1_2  29 edlekqaeiakeaqqkYerelvkhaedvkel 59 
                 +dl + a+++++  +k+e     h + +++l
  KOO20823.1 195 QDLGELAAYTRREREKFEALNAAHQQRMQQL 225
                 7888888888888889988888888888887 PP

  == domain 5  score: -2.9 bits;  conditional E-value: 7.3
  TPR_MLP1_2  79 eaesakaeleesees 93 
                 ++e+++  ++es++s
  KOO20823.1 244 KLEALQRHFDESRQS 258
                 444444444444444 PP

>> WEMBL  Weak chloroplast movement under blue light
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.1  25.6   0.00051      0.46     304     424 ..      31     159 ..       2     162 .. 0.73

  Alignments for each domain:
  == domain 1  score: 9.1 bits;  conditional E-value: 0.00051
       WEMBL 304 evkaniekakdevklLkvaaasLrseLekekaeLaslrq........regmasiavssLeaelsrtkselelvqakekearekmvelpkeLqeAaqeae 394
                    a+++ a+d++   ++ a+ L  eL  e+++ a+l +        r       ++ L+ae++++++ele+++   + ar    +   eL+ A+q+a 
  KOO20823.1  31 AATAKLSHAQDQLARAHAHASDLVRELTLERERSAELTRqlqrsepeRRDRDRFEIERLRAEVHSARTELETARFELETARRDASQARTELETARQDAS 129
                 445667777777777788888887777655554444332122244344456678999999999999999999999999999999999999999999999 PP

       WEMBL 395 eAkslAqaareelrkakeeaeqakaavstv 424
                 +A+++ ++ar el++a+ +a qa+ + ++v
  KOO20823.1 130 QARTELETARTELETARRDASQARWHHEAV 159
                 999999999999999999999999776665 PP

>> LCD1  DNA damage checkpoint protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.7   0.00017      0.15       8      83 ..      58     137 ..      54     201 .. 0.68

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00017
                 HHHHCCHHHHHHHHHHHH.HHHHHHHHHHHHHHHHHHHHHHHCCCHHCHHTTTTTT..H.HHH------TT---SSS--T CS
        LCD1   8 lLeqekekeleklknskk.qlkesheeelekLkkevqkleDekkFlenElrslset..k.sqaskksaeedtdnsssvsk 83 
                  Le+e+  el+++ ++ + + +++ + e+e L+ ev+++ +e     +El ++ +   + +++ ++ +++ ++  +++++
  KOO20823.1  58 TLERERSAELTRQLQRSEpERRDRDRFEIERLRAEVHSARTELETARFELETARRDasQaRTELETARQDASQARTELET 137
                 599999999998777665166677777**************988888887777764221233333333333333333332 PP

>> Phage_HK97_TLTM  Tail length tape measure protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.4   2.3     0.005       4.5     130     177 ..      17      64 ..       1      78 [. 0.84
   2 ?    4.4   0.0      0.02        18      64     107 ..     102     145 ..      87     224 .. 0.83

  Alignments for each domain:
  == domain 1  score: 6.4 bits;  conditional E-value: 0.005
  Phage_HK97_TLTM 130 eatdklsesqsaleavtkkskeiqsaLtsveadrvrlirqqaaeqnkv 177
                      e++ + s+s+ a  a+t+k   +q+ L  ++a+  +l+r+ + e ++ 
       KOO20823.1  17 ESSAESSVSEHAVAAATAKLSHAQDQLARAHAHASDLVRELTLERERS 64 
                      6788999*********************************99998876 PP

  == domain 2  score: 4.4 bits;  conditional E-value: 0.02
  Phage_HK97_TLTM  64 lkklsleevadekdklkeslkeqnklvkeaeqkveelkkeldky 107
                      +  ++le ++ + ++ + +l +  +++++a++++e  + el+  
       KOO20823.1 102 TARFELETARRDASQARTELETARQDASQARTELETARTELETA 145
                      45678888999999999999999999999999999999999865 PP

>> SNARE  SNARE domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.7   1.1     0.016        14       7      32 ..      26      51 ..      25      52 .. 0.88
   2 ?    4.5   0.3     0.038        34       4      35 ..      87     118 ..      86     119 .. 0.91
   3 ?    6.7   0.4    0.0083       7.4      10      35 ..     107     132 ..     105     133 .. 0.94
   4 ?    8.6   0.8    0.0021       1.9       9      36 ..     127     154 ..     125     155 .. 0.93

  Alignments for each domain:
  == domain 1  score: 5.7 bits;  conditional E-value: 0.016
                HHHHHHHHHHHHHHHHHHHHHHHHHC CS
       SNARE  7 dtnVenaqsnveraqkeLkkavkyqk 32
                ++ V  a+ ++++aq++L++a  +++
  KOO20823.1 26 EHAVAAATAKLSHAQDQLARAHAHAS 51
                6789999**************88876 PP

  == domain 2  score: 4.5 bits;  conditional E-value: 0.038
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHCTXX CS
       SNARE   4 DrIdtnVenaqsnveraqkeLkkavkyqksnR 35 
                  r+ ++V +a++ +e a+ eL  a++ ++++R
  KOO20823.1  87 ERLRAEVHSARTELETARFELETARRDASQAR 118
                 67778999*********************998 PP

  == domain 3  score: 6.7 bits;  conditional E-value: 0.0083
                 HHHHHHHHHHHHHHHHHHHHHHCTXX CS
       SNARE  10 VenaqsnveraqkeLkkavkyqksnR 35 
                  e+a+ ++++a+ eL  a++ ++++R
  KOO20823.1 107 LETARRDASQARTELETARQDASQAR 132
                 699********************998 PP

  == domain 4  score: 8.6 bits;  conditional E-value: 0.0021
                 HHHHHHHHHHHHHHHHHHHHHHHCTXXX CS
       SNARE   9 nVenaqsnveraqkeLkkavkyqksnRk 36 
                 +  +a++ +e a+ eL  a++ ++++R+
  KOO20823.1 127 DASQARTELETARTELETARRDASQARW 154
                 67899**********************9 PP

>> CENP-F_leu_zip  Leucine-rich repeats of kinetochore protein Cenp-F/LEK1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.9   2.1      0.11        99      50      92 ..      32      74 ..       3      80 .. 0.65
   2 ?   14.2  11.3   3.6e-05     0.032       7      89 ..      66     149 ..      61     155 .. 0.83
   3 ?   -2.8   0.1       6.4   5.8e+03      79      99 ..     205     225 ..     199     227 .. 0.58

  Alignments for each domain:
  == domain 1  score: 2.9 bits;  conditional E-value: 0.11
  CENP-F_leu_zip 50 skaevetlkeeieelaeelreleldLvalrsekeeLekelqkk 92
                    + a+++  ++++ +  ++ ++l  +L+  r+   eL+++lq +
      KOO20823.1 32 ATAKLSHAQDQLARAHAHASDLVRELTLERERSAELTRQLQRS 74
                    3344556677777777777778888877777778888888765 PP

  == domain 2  score: 14.2 bits;  conditional E-value: 3.6e-05
  CENP-F_leu_zip   7 hvlekLKeserk.adsLkdkvenLerelemseenqekvileaEtskaevetlkeeieelaeelreleldLvalrsekeeLekel 89 
                     +++ +L++se +  d  +  +e+L +e+  +  ++e +  e Et++  +++ ++e+e+ ++  ++ +++L++ r e e+  ++ 
      KOO20823.1  66 ELTRQLQRSEPErRDRDRFEIERLRAEVHSARTELETARFELETARRDASQARTELETARQDASQARTELETARTELETARRDA 149
                     56667777764314555557*******************************************************999877765 PP

  == domain 3  score: -2.8 bits;  conditional E-value: 6.4
  CENP-F_leu_zip  79 rsekeeLekelqkkqervseL 99 
                     r+e+e+ e      q+r+++L
      KOO20823.1 205 RREREKFEALNAAHQQRMQQL 225
                     555665555555555555554 PP

>> DUF4201  Domain of unknown function (DUF4201)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.6   3.8     0.013        12      62     129 ..      40     108 ..      25     113 .. 0.83
   2 ?   14.4   2.9   2.7e-05     0.024      64     142 ..      85     163 ..      81     168 .. 0.93
   3 ?   -1.0   0.1       1.4   1.3e+03     119     143 ..     206     230 ..     195     259 .. 0.59

  Alignments for each domain:
  == domain 1  score: 5.6 bits;  conditional E-value: 0.013
     DUF4201  62 nkeLkrlkkkttktvhalthlkeklhmleselselkkelkekee.rlaklrkelykvklerdklrkqne 129
                 +++L r +  + + v +lt ++e+  +l+++l++ + e +++++ ++++lr+e++++++e + +r + e
  KOO20823.1  40 QDQLARAHAHASDLVRELTLERERSAELTRQLQRSEPERRDRDRfEIERLRAEVHSARTELETARFELE 108
                 5678888888899999********************999999986899999999999999888876655 PP

  == domain 2  score: 14.4 bits;  conditional E-value: 2.7e-05
     DUF4201  64 eLkrlkkkttktvhalthlkeklhmleselselkkelkekeerlaklrkelykvklerdklrkqneklkqqggllrvPa 142
                 e++rl+  +++   +l++ +  l + ++  s++++el++  ++  + r el+ +++e + +r++ ++ + +++ +r P+
  KOO20823.1  85 EIERLRAEVHSARTELETARFELETARRDASQARTELETARQDASQARTELETARTELETARRDASQARWHHEAVRTPQ 163
                 678999999999999****************************************************999999999997 PP

  == domain 3  score: -1.0 bits;  conditional E-value: 1.4
     DUF4201 119 lerdklrkqneklkqqggllrvPaL 143
                  er+k ++ n+  +q+ ++l  P+L
  KOO20823.1 206 REREKFEALNAAHQQRMQQLMGPEL 230
                 5566666666666666665555555 PP

>> EzrA  Septation ring formation regulator, EzrA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.9   9.3    0.0017       1.5     299     431 ..      19     150 ..      15     153 .. 0.86

  Alignments for each domain:
  == domain 1  score: 6.9 bits;  conditional E-value: 0.0017
                 HHHHHHTT.TSSSSSHHHHT--HHHHTTGGG-TTTS-GGGSSTTTSTTHHHHHHHHHHHH.HHHHHHHHHHS-SS---STTGGGTHHHHHHHHHHHHHH CS
        EzrA 299 eAkkevek.nlkelkeklehlekqnkelkeeldrlkqsYeLseeeleklrelekelkele.kdyeeleekleekkvaYSelqeeleeleekleeieekq 395
                  A+  v +  ++  + kl+h+++q+    +  ++l ++ +L   e e+  el+++l++ e ++ ++++ ++e   +   + + ele++  +le+   + 
  KOO20823.1  19 SAESSVSEhAVAAATAKLSHAQDQLARAHAHASDLVRELTL---ERERSAELTRQLQRSEpERRDRDRFEIERLRAEVHSARTELETARFELETARRDA 114
                 56665544156788999**********************99...7788888899998877456777888999999999999****************** PP

                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSS CS
        EzrA 396 eeileslkslrkdEkrAreqldeikkelkeikrkie 431
                  + +++l++ r+d ++Ar +l++ ++el++++r  +
  KOO20823.1 115 SQARTELETARQDASQARTELETARTELETARRDAS 150
                 ******************************999765 PP

>> BAR_2  Bin/amphiphysin/Rvs domain for vesicular trafficking
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.7  10.8     0.031        28     190     238 ..      82     142 ..       3     261 .. 0.75

  Alignments for each domain:
  == domain 1  score: 3.7 bits;  conditional E-value: 0.031
       BAR_2 190 efkkvhelrkkVeesRlkfdtlrseveek............ekpetee.....edkklleklEDef 238
                 +  ++++lr++V+++R +++t+r e+e+             +     +     + +++le++  e+
  KOO20823.1  82 DRFEIERLRAEVHSARTELETARFELETArrdasqarteleT-----ArqdasQARTELETARTEL 142
                 44578999***************9998854444444433321.....0333334444455444444 PP

>> Fez1  Fez1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.8   4.9      0.33   2.9e+02     107     158 ..      22      71 ..       1      81 [. 0.50
   2 ?   10.2  12.3   0.00086      0.77      17     147 ..      69     255 ..      65     266 .. 0.60

  Alignments for each domain:
  == domain 1  score: 1.8 bits;  conditional E-value: 0.33
        Fez1 107 sleeeeaalesdeakaqrqeaeeleelkreverlraeLkeerqkkeeqassF 158
                 s + +e+a+++ +ak  +++ ++l++ +++   l +eL++er+++ e + + 
  KOO20823.1  22 S-SVSEHAVAAATAKLSHAQ-DQLARAHAHASDLVRELTLERERSAELTRQL 71 
                 1.112222333334444433.6677777777778888888887776554443 PP

  == domain 2  score: 10.2 bits;  conditional E-value: 0.00086
        Fez1  17 qQLkdsqaevtqkls.eivalkaqlrelrakleekeeeikeleesleektlelevcenelqrkkseaellrekvekleeelkelreelselsleeeeaa 114
                  QL+ s  e   +   ei  l+a+++ +r++le+   e+++++  +++  +ele+  ++ +++++e e+ r ++e++ ++ ++ r + +++ + ++  +
  KOO20823.1  69 RQLQRSEPERRDRDRfEIERLRAEVHSARTELETARFELETARRDASQARTELETARQDASQARTELETARTELETARRDASQARWHHEAVRTPQT--T 165
                 677777777666654377788888888888888888888888888888888888888888888888888888888888888887776555444333..2 PP

        Fez1 115 ..............................................lesdeakaqrqe...........aeeleelkreverlraeLkee 147
                                                               ++ ++a++qr +             + ++ ++++e l+++  e 
  KOO20823.1 166 pytggsrytsglspassaafsygradsppqdlgelaaytrrerekfEALNAAHQQRMQqlmgpelplspDVAPNANRHKLEALQRHFDES 255
                 347888888888888888888888887777776654444444443322222222222233444444444222333333333333333333 PP

>> Golgin_A5  Golgin subfamily A member 5
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6   8.5    0.0053       4.8      49     141 ..      16     111 ..       1     115 [. 0.63
   2 ?    8.0  13.5     0.002       1.8      44     135 ..      66     154 ..      50     164 .. 0.78

  Alignments for each domain:
  == domain 1  score: 6.6 bits;  conditional E-value: 0.0053
   Golgin_A5  49 ldelkqerdllreelqklnqqieqlrtelqdleaqqq...aeaeslreqlqeleeqleeerkake.eveaelerlkeelryleeelvrskatlqsri 141
                 l e ++e+ + ++ +++++ ++++ + +l++  a+++    e    re+ +el  ql+ ++ +++ + + e+erl+ e+++++ el  ++ +l++  
  KOO20823.1  16 L-ESSAESSVSEHAVAAATAKLSHAQDQLARAHAHASdlvRELTLERERSAELTRQLQRSEPERRdRDRFEIERLRAEVHSARTELETARFELETAR 111
                 3.3345666666667777777777777777666665411146666677777777777765544440456799***********99998888777654 PP

  == domain 2  score: 8.0 bits;  conditional E-value: 0.002
   Golgin_A5  44 alsaeldelk.qerdllreelqklnqqieqlrtelqdleaqqqaeaeslreqlqeleeqleeerkakeeveaelerlkeelryleeelvrska 135
                 +l+ +l+  + ++rd  r e+++l+ ++++ rtel+        e e++r   ++++++le+ r+   ++++ele  + el++++ + ++++ 
  KOO20823.1  66 ELTRQLQRSEpERRDRDRFEIERLRAEVHSARTELET---A-RFELETARRDASQARTELETARQDASQARTELETARTELETARRDASQARW 154
                 3444455553146788899999999999999999643...3.368899999999999999999999999999*********999999998775 PP

>> YscO-like  YscO-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.0   8.7     0.025        22      19     126 ..      19     119 ..      11     128 .. 0.59
   2 ?    7.4  13.8    0.0046       4.2      18     129 ..      44     157 ..      39     161 .. 0.83
   3 ?   -2.3   0.2       4.5   4.1e+03      33      50 ..     206     223 ..     199     227 .. 0.51

  Alignments for each domain:
  == domain 1  score: 5.0 bits;  conditional E-value: 0.025
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
   YscO-like  19 eAEkvvkdkkkaLekEkeklrkleeerdkvkkhkkaKvaqlreeldkGttsdkikkmkryikvvkeelkqeekkvekQkekVkvAerkvEqareelakk 117
                  AE  v++  +a+++  +kl + ++++ ++  h  + v++l  e ++ +   + ++  + +++ +++      ++e+ + +V+ A+ ++E ar el  +
  KOO20823.1  19 SAESSVSE--HAVAAATAKLSHAQDQLARAHAHASDLVRELTLERERSAELTRQLQRSEPERRDRDR-----FEIERLRAEVHSARTELETARFELETA 110
                 56665554..456667788888888888888888888888887777777666555555555444444.....445555555555555555555555555 PP

                 HHHHHHHHH CS
   YscO-like 118 rkeveklek 126
                 r++  + ++
  KOO20823.1 111 RRDASQART 119
                 555444333 PP

  == domain 2  score: 7.4 bits;  conditional E-value: 0.0046
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH....HHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
   YscO-like  18 eeAEkvvkdkkkaLekEkeklrkleeerdkvkkhkkaK....vaqlreeldkGttsdkikkmkryikvvkeelkqeekkvekQkekVkvAerkvEqare 112
                  +A    +d +++L  E+e+ ++l  ++++   +++++    ++ lr e+    t  ++++++  ++  + + +q   ++e  ++  + A+ ++E ar+
  KOO20823.1  44 ARAHAHASDLVRELTLERERSAELTRQLQRSEPERRDRdrfeIERLRAEVHSART--ELETARFELETARRDASQARTELETARQDASQARTELETART 140
                 5666667888999999999999999999988888777544447889999987665..67777777899999999999********************** PP

                 HHHHHHHHHHHHHHHHH CS
   YscO-like 113 elakkrkeveklekhke 129
                 el  +r++  + + h+e
  KOO20823.1 141 ELETARRDASQARWHHE 157
                 *********99999987 PP

  == domain 3  score: -2.3 bits;  conditional E-value: 4.5
                 HHHHHHHHHHHHHHHHHH CS
   YscO-like  33 kEkeklrkleeerdkvkk 50 
                 +E+ek + l+++ +++++
  KOO20823.1 206 REREKFEALNAAHQQRMQ 223
                 344444444444444443 PP

>> CENP-H  Centromere protein H (CENP-H)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.2   9.3    0.0072       6.4       8      84 ..      15     102 ..       9     108 .. 0.75
   2 ?    6.3   9.2     0.014        12       6      81 ..      77     148 ..      74     160 .. 0.71
   3 ?    6.1   0.2     0.016        14      39      82 ..     203     259 ..     198     263 .. 0.82

  Alignments for each domain:
  == domain 1  score: 7.2 bits;  conditional E-value: 0.0072
      CENP-H   8 rdelssellklsqelrelqeeltevekenlrlkrknrelaael.lelakekesek..........eklkeelekleaelkksrqrwrv 84 
                 r e s e    + ++++++++l++++ +  r++++   l++el le ++ +e ++          ++++ e+e+l+ae++ +r + ++
  KOO20823.1  15 RLESSAESSVSEHAVAAATAKLSHAQDQLARAHAHASDLVRELtLERERSAELTRqlqrseperrDRDRFEIERLRAEVHSARTELET 102
                 5555666666677788888888888888888888888888888657766666666788888777766888999999999988887766 PP

  == domain 2  score: 6.3 bits;  conditional E-value: 0.014
      CENP-H   6 eqrdelssellklsqelrelqeeltevekenlrlkrknrelaaellelakekesekeklkeelekleaelkksrqr 81 
                 e+rd+   e+++l +e+++++ el++++ e   ++r   +  +el+  ++++++ +     ele++++el+++r+ 
  KOO20823.1  77 ERRDRDRFEIERLRAEVHSARTELETARFELETARRDASQARTELETARQDASQAR----TELETARTELETARRD 148
                 57888889999**********99999999988888888888888844444444444....4555555555555543 PP

  == domain 3  score: 6.1 bits;  conditional E-value: 0.016
      CENP-H  39 lkrknrelaaellelakekesek.............eklkeelekleaelkksrqrw 82 
                  +r++re+++ l    ++ +++              + ++++le+l++++++srq +
  KOO20823.1 203 YTRREREKFEALNAAHQQRMQQLmgpelplspdvapNANRHKLEALQRHFDESRQSA 259
                 67888999999977777777777899999998888777****************975 PP

>> DUF2564  Protein of unknown function (DUF2564)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   3.6   0.00098      0.88      22      60 ..      20      58 ..       7      75 .. 0.82
   2 ?    3.1   6.2      0.14   1.3e+02      20      50 ..     115     140 ..      85     162 .. 0.55

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.00098
     DUF2564 22 ATmsmdpdqlesAtqAiedAreqlssaeehatgvdeeFl 60
                A  s ++  + +At+ +  A++ql++a++ha ++  e  
  KOO20823.1 20 AESSVSEHAVAAATAKLSHAQDQLARAHAHASDLVRELT 58
                7789999************************98877654 PP

  == domain 2  score: 3.1 bits;  conditional E-value: 0.14
     DUF2564  20 GqATmsmdpdqlesAtqAiedAreqlssaee 50 
                  qA     ++ le+A q   +Ar +l++a+ 
  KOO20823.1 115 SQA-----RTELETARQDASQARTELETART 140
                 333.....33333333333333333333332 PP

>> COG2  COG (conserved oligomeric Golgi) complex component, COG2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.1   0.7     0.052        47      75     117 ..      26      69 ..      17      80 .. 0.79
   2 ?    5.8   2.4     0.015        14      67      96 ..     110     139 ..      79     163 .. 0.47

  Alignments for each domain:
  == domain 1  score: 4.1 bits;  conditional E-value: 0.052
        COG2  75 esplaaarkkvesvreklsereeeveskleeakeleekr.ellk 117
                 e+ +aaa+ k++ ++++l++++++ ++ ++e +  +e + el +
  KOO20823.1  26 EHAVAAATAKLSHAQDQLARAHAHASDLVRELTLERERSaELTR 69 
                 67889999999999999999999999999999877776634444 PP

  == domain 2  score: 5.8 bits;  conditional E-value: 0.015
        COG2  67 lqeeleevesplaaarkkvesvreklsere 96 
                  +++ ++ +++l++ar++ +++r +l+ ++
  KOO20823.1 110 ARRDASQARTELETARQDASQARTELETAR 139
                 222222222222222222222222222222 PP

>> HIP1_clath_bdg  Clathrin-binding domain of Huntingtin-interacting protein 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.3   2.3      0.29   2.6e+02      43      79 ..      39      75 ..       9      80 .. 0.63
   2 ?   12.5   7.9    0.0002      0.18      23      90 ..      55     122 ..      37     125 .. 0.83
   3 ?    6.8   3.0     0.011        10      43      84 ..     110     151 ..     105     161 .. 0.69
   4 ?    0.1   0.7       1.4   1.2e+03      58      58 ..     233     233 ..     195     264 .. 0.42

  Alignments for each domain:
  == domain 1  score: 2.3 bits;  conditional E-value: 0.29
  HIP1_clath_bdg 43 aerkleeqkeelekLkreleakraelarlkssLesse 79
                    a+ +l+  + +   L rel+ +r++ a+l   L++se
      KOO20823.1 39 AQDQLARAHAHASDLVRELTLERERSAELTRQLQRSE 75
                    3444445555555566666666666666666666655 PP

  == domain 2  score: 12.5 bits;  conditional E-value: 0.0002
  HIP1_clath_bdg  23 eeverekkeleeelerlkeeaerkleeqkeelekLkreleakraelarlkssLesseqsgeqlssqla 90 
                      e+  e+++ +e  ++l++++ ++ +  ++e+e+L++e+++ r+el++++  Le+  +  +q  ++l+
      KOO20823.1  55 RELTLERERSAELTRQLQRSEPERRDRDRFEIERLRAEVHSARTELETARFELETARRDASQARTELE 122
                     4666677777777788888888888999*****************************99999998886 PP

  == domain 3  score: 6.8 bits;  conditional E-value: 0.011
  HIP1_clath_bdg  43 aerkleeqkeelekLkreleakraelarlkssLesseqsgeq 84 
                     a+r  ++ ++ele+ +++  + r+el+++++ Le+  +  +q
      KOO20823.1 110 ARRDASQARTELETARQDASQARTELETARTELETARRDASQ 151
                     445556667778888888888888888888888877665554 PP

  == domain 4  score: 0.1 bits;  conditional E-value: 1.4
  HIP1_clath_bdg  58 k 58 
                      
      KOO20823.1 233 S 233
                     2 PP

>> DLP_helical  Dynamin-like helical domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.1   2.9     0.098        88      48     119 ..      34     108 ..      14     114 .. 0.51
   2 ?    8.0   4.4    0.0016       1.4      74     126 ..      91     143 ..      86     145 .. 0.87
   3 ?    8.6   3.2    0.0011      0.96      75     120 ..     106     151 ..     103     158 .. 0.86

  Alignments for each domain:
  == domain 1  score: 2.1 bits;  conditional E-value: 0.098
  DLP_helical  48 ekikknggelalieetkksvirdvlerqlpeae..erleelekevek.leesakriekelaelkkeieearielr 119
                  +k++++  +la  +  + + +r+++ ++   ae  ++l++ e e+++  + + +r+++e+++++ e+e+ar el+
   KOO20823.1  34 AKLSHAQDQLARAHAHASDLVRELTLERERSAEltRQLQRSEPERRDrDRFEIERLRAEVHSARTELETARFELE 108
                  445555555455555555566665544444443113333333333220223445555555555555555555554 PP

  == domain 2  score: 8.0 bits;  conditional E-value: 0.0016
  DLP_helical  74 rqlpeaeerleelekevekleesakriekelaelkkeieearielreelkayf 126
                   ++  a+++le +  e+e ++ +a++ ++el++++++ ++ar+el++  ++++
   KOO20823.1  91 AEVHSARTELETARFELETARRDASQARTELETARQDASQARTELETARTELE 143
                  57888999999999999999999******************999998777665 PP

  == domain 3  score: 8.6 bits;  conditional E-value: 0.0011
  DLP_helical  75 qlpeaeerleelekevekleesakriekelaelkkeieearielre 120
                  +l++a++ ++++ +e+e ++++a++ ++el++++ e+e+ar+++++
   KOO20823.1 106 ELETARRDASQARTELETARQDASQARTELETARTELETARRDASQ 151
                  5788999999999999999999999999999999999999998765 PP

>> DUF1640  Protein of unknown function (DUF1640)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.7  14.3     0.031        27       9     153 ..      15     149 ..      13     162 .. 0.67

  Alignments for each domain:
  == domain 1  score: 4.7 bits;  conditional E-value: 0.031
     DUF1640   9 rLeekGftkeqAeaimsaltevlneslekvakslvskselekseylqkaalselrkevqisersefaalrseteklqreleklkqkLreeidklkadir 107
                 rLe +  +++ +e  + a t+ l +  +++a+ ++  s+l +++ l +   +el  ++q se +     r e e+l+ e+   +++L+          r
  KOO20823.1  15 RLE-SSAESSVSEHAVAAATAKLSHAQDQLARAHAHASDLVRELTLERERSAELTRQLQRSEPERRDRDRFEIERLRAEVHSARTELET--------AR 104
                 565.44778889999***********************************************666666666666666666666666654........23 PP

     DUF1640 108 ldlnleKgrireelakleakiqelnnkidrevsalrteiEsvKldv 153
                  +l++ + ++ +  ++le   q+   +  +e++  rte+E ++ d+
  KOO20823.1 105 FELETARRDASQARTELETARQD-ASQARTELETARTELETARRDA 149
                 33333333333333333332222.2334455555555555555544 PP

>> BRE1  BRE1 E3 ubiquitin ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.8   0.7      0.14   1.3e+02      37      82 ..      33      75 ..       7      81 .. 0.57
   2 ?    9.8   1.6   0.00088      0.79       4      72 ..      85     153 ..      83     162 .. 0.88
   3 ?   -1.6   0.0       3.2   2.9e+03      66      89 ..     202     225 ..     192     230 .. 0.60

  Alignments for each domain:
  == domain 1  score: 2.8 bits;  conditional E-value: 0.14
        BRE1 37 eaekakadqkyfaamrskdalenelkkLnkllsKsselieqLkele 82
                +a+ + a+ +   a  +  +l   ++ L+   ++s+el  qL+ +e
  KOO20823.1 33 TAKLSHAQDQLARAHAHASDL---VRELTLERERSAELTRQLQRSE 75
                444444444333333333333...4556666666666666666665 PP

  == domain 2  score: 9.8 bits;  conditional E-value: 0.00088
        BRE1   4 ELvklekafeelseqlskkvkeltileekklrleaekakadqkyfaamrskdalenelkkLnkllsKss 72 
                 E+++l ++   ++ +l++  +el+      +++ +e + a+q   +a+ + ++ ++el + ++  s+ +
  KOO20823.1  85 EIERLRAEVHSARTELETARFELETARRDASQARTELETARQDASQARTELETARTELETARRDASQAR 153
                 899999999999999999999999999999999999999999999999999999999999998887765 PP

  == domain 3  score: -1.6 bits;  conditional E-value: 3.2
        BRE1  66 kllsKsselieqLkelekefvrkl 89 
                 +   +++e+ e+L+ ++ +  ++l
  KOO20823.1 202 AYTRREREKFEALNAAHQQRMQQL 225
                 555556666666665555554444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (272 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1448  (0.080763); expected 358.6 (0.02)
Passed bias filter:                      422  (0.0235373); expected 358.6 (0.02)
Passed Vit filter:                        98  (0.005466); expected 17.9 (0.001)
Passed Fwd filter:                        52  (0.00290033); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              20  [number of targets reported over threshold]
# CPU time: 0.89u 0.33s 00:00:01.22 Elapsed: 00:00:00.51
# Mc/sec: 1600.51
//
Query:       KOO20824.1  [L=462]
Description: DNAj heat shock n-terminal domain-containing protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.9e-23   81.8   0.2    5.4e-23   80.9   0.2    1.5  1  DnaJ      DnaJ domain
    1.3e-20   73.7   1.5      7e-20   71.4   0.4    2.2  2  DnaJ-X    X-domain of DnaJ-containing
    0.00061   19.5   0.0     0.0013   18.5   0.0    1.5  1  SAP       SAP domain
     0.0018   18.6   0.9     0.0018   18.6   0.9    2.0  2  ATG_C     Autophagy-related protein C terminal domain
  ------ inclusion threshold ------
      0.065   13.2   0.0       0.13   12.2   0.0    1.4  1  LRR19-TM  Leucine-rich repeat family 19 TM domain
      0.066   13.1   0.0       0.14   12.1   0.0    1.5  1  Armet     Degradation arginine-rich protein for mis-folding
        0.1   12.2   1.8       0.35   10.4   0.4    2.0  2  Arfaptin  Arfaptin-like domain
        0.1   12.9   0.4        1.2    9.5   0.1    2.6  2  DUF5347   Family of unknown function (DUF5347)


Domain annotation for each model (and alignments):
>> DnaJ  DnaJ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   80.9   0.2   2.4e-26   5.4e-23       1      63 []     145     207 ..     145     207 .. 0.99

  Alignments for each domain:
  == domain 1  score: 80.9 bits;  conditional E-value: 2.4e-26
                 HHHHHHTSSTTG-HHHHHHHHHHHHHHHSTTTSCCHHHHHHHHHHHHHHHHHHTSHHHHHHHH CS
        DnaJ   1 dyYeiLgvskdasedeIkkaYrklalkyHPDknpkdpeaeekFkeineAyevLsdpekRkqYD 63 
                 ++Ye+Lgv+++a+++eIk aYr+ a+++HPDknp+dp+a+ kF+++ eAy+vLs+++ R++YD
  KOO20824.1 145 TFYELLGVAPEATAAEIKVAYRTAARRLHPDKNPDDPNANLKFQKLGEAYQVLSNEDARAKYD 207
                 58************************************************************9 PP

>> DnaJ-X  X-domain of DnaJ-containing
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.6   0.0      0.15   3.3e+02      97     171 ..      79     177 ..      60     195 .. 0.71
   2 !   71.4   0.4   3.1e-23     7e-20       1     158 [.     269     402 ..     269     403 .. 0.94

  Alignments for each domain:
  == domain 1  score: 0.6 bits;  conditional E-value: 0.15
      DnaJ-X  97 vssaldaqstmeelakeqekk........................keeekeeeeeteeelaemekkllgkvLaaawkgskfeIestlrevcdkvLkDks 171
                 +++ ++a+ +me  + ++ek+                          e+ +e+++ + +    e  ++ ++L +a + +  eI+   r+++ ++  Dk+
  KOO20824.1  79 AQTPFSAAAAMEGKTWDKEKRswkhyslpteeievaaaeaewnakLAEKRKERQKRKGNGGAVEDRTFYELLGVAPEATAAEIKVAYRTAARRLHPDKN 177
                 556666777777754444444666666666666666666666655344455556666666778888888899999999999999988888888877776 PP

  == domain 2  score: 71.4 bits;  conditional E-value: 3.1e-23
      DnaJ-X   1 qeereeeLakkLrekLspyveadkkeetesFkkkleeeaesLkmesFGleilhtIGkiYknkAksflkskqkflglgglfssvkekgrvvkdtfktvss 99 
                 q++re+ +a kL  kL+pyv+   +++  +F+++++e+a++L  ++FG  + htIG +Y  kA++ lk     lg     + +++kg++++ + +++ +
  KOO20824.1 269 QRQREVACAAKLAAKLQPYVDC--QQSLVDFEAQVREQAKELATSAFGELLTHTIGAVYVYKASQALKL---NLG-----AAMRQKGHTMQTNTRMLGA 357
                 799******************9..55999****************************************...456.....89***************** PP

      DnaJ-X 100 aldaqstmeelakeqekkkeeekeeeeeteeelaemekkllgkvLaaawkgskfeIest 158
                 +l++ ++++                 + +ee++a+m +  +g +L+ aw +s +++e t
  KOO20824.1 358 ILNMIKVARAA--------------HSLKEEDQAKMMHSQMGSFLEGAWYVSVVDVETT 402
                 *****999993..............3467889************************987 PP

>> SAP  SAP domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.5   0.0   5.7e-07    0.0013       4      32 ..     424     454 ..     423     456 .. 0.86

  Alignments for each domain:
  == domain 1  score: 18.5 bits;  conditional E-value: 5.7e-07
                 --HHHHHHHHHHTT--TTS-..HHHHHHHHH CS
         SAP   4 ltVaeLKeeLkkrGLptsGk..KaeLieRLk 32 
                 ++ +eL++++k+rGL+t G+  K+e ++ ++
  KOO20824.1 424 MSMKELRAIMKARGLSTDGLleKTEFVDAIC 454
                 7889***************988888777766 PP

>> ATG_C  Autophagy-related protein C terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.6   0.9   8.1e-07    0.0018       6      82 ..       5      81 ..       2      93 .. 0.95
   2 ?   -4.2   0.1         8   1.8e+04      35      51 ..     126     142 ..     122     144 .. 0.64

  Alignments for each domain:
  == domain 1  score: 18.6 bits;  conditional E-value: 8.1e-07
       ATG_C  6 sqPedlreGlqqAysslskglksaaqtilavpsevaeskgakgavkavvravPvavlrPligateavsktlqGvrnq 82
                ++P+ + eG+++A   ++  +   a  ++ +p + a ++ga+g++ +++  +  av+ P++g++    +++ G+ ++
  KOO20824.1  5 RKPKHVGEGVTSALGLVTGSVVAGAAGLVILPAKGAMEGGARGFASGLAMGALGAVVLPTMGVVAGSVQVMRGIAQT 81
                68***********************************************************************9865 PP

  == domain 2  score: -4.2 bits;  conditional E-value: 8
       ATG_C  35 avpsevaeskgakgavk 51 
                 ++ +e +++kg +gav+
  KOO20824.1 126 EKRKERQKRKGNGGAVE 142
                 45566667777777765 PP

>> LRR19-TM  Leucine-rich repeat family 19 TM domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   5.9e-05      0.13      33      91 ..      86     144 ..      71     148 .. 0.88

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 5.9e-05
    LRR19-TM  33 llaikckllykfllsYrHrrLeeseaetyeegltenrnslseasdtnsedddDGfiEDk 91 
                 + a+ +k++ k  +s++H  L+ +e+e +  +  +n +  ++ +++++ + + G +ED+
  KOO20824.1  86 AAAMEGKTWDKEKRSWKHYSLPTEEIEVAAAEAEWNAKLAEKRKERQKRKGNGGAVEDR 144
                 568899*********************99999999999888999999998999999996 PP

>> Armet  Degradation arginine-rich protein for mis-folding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   6.3e-05      0.14      96     136 ..     414     454 ..     410     459 .. 0.88

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 6.3e-05
       Armet  96 idlksvdlkklkvkeLkkiledWgeeCkgCieksdfikrie 136
                 + l++  l  + +keL+ i++  g + +g +ek++f++ i 
  KOO20824.1 414 VALDRETLLVMSMKELRAIMKARGLSTDGLLEKTEFVDAIC 454
                 567777888999*************************9985 PP

>> Arfaptin  Arfaptin-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.5   0.0      0.17   3.8e+02     143     203 ..     162     224 ..     157     240 .. 0.67
   2 ?   10.4   0.4   0.00016      0.35      15     115 ..     260     363 ..     257     369 .. 0.77

  Alignments for each domain:
  == domain 1  score: 0.5 bits;  conditional E-value: 0.17
                 HHHHHHHHHHHHHHH..TSTSSTTCHHHHHHHHHHH.....HHHHHHHHHHHHHHHHHHHHHHHHH CS
    Arfaptin 143 rieYrayllklkeasdEldpevakqeekfreaqenv.....qeakekfdklrkDvlqKveLLeekr 203
                 ++ Yr +   l   ++  dp++++   kf++  e +     ++a++k+d    D l+  +L++++ 
  KOO20824.1 162 KVAYRTAARRLHPDKNPDDPNANL---KFQKLGEAYqvlsnEDARAKYDAKGLDGLKDTQLMDAST 224
                 555555555555555445555555...555555555555888999999988888888888888775 PP

  == domain 2  score: 10.4 bits;  conditional E-value: 0.00016
                 XXXXXXXXX--....CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH...HHHHHHHHHHHHHHH..H-CCGHHHHHHHHHHHHHHHHHHHHH CS
    Arfaptin  15 vlseklgkkedervitvddeLeaklevlreiketykelvklaknlskallkls...qtekelGdvfkdlskrekqealgeaftatgealrllakqgeal 110
                 v++++lg k+++r +++ ++L+akl+ + + ++   +  + +++ +k l   +      + +G v+  ++ +  + +lg+a+++ g ++++ ++   a+
  KOO20824.1 260 VSLKHLGHKQRQREVACAAKLAAKLQPYVDCQQSLVDFEAQVREQAKELATSAfgeLLTHTIGAVYVYKASQALKLNLGAAMRQKGHTMQTNTRMLGAI 358
                 7899************************99998776655555555555544331112346788888888888999999999999999999888877777 PP

                 HHHHH CS
    Arfaptin 111 lkalk 115
                 l+ +k
  KOO20824.1 359 LNMIK 363
                 77665 PP

>> DUF5347  Family of unknown function (DUF5347)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.2   0.0      0.41   9.2e+02       5      42 ..     267     305 ..     263     311 .. 0.82
   2 ?    9.5   0.1   0.00053       1.2      36      71 ..     339     373 ..     321     384 .. 0.82

  Alignments for each domain:
  == domain 1  score: 0.2 bits;  conditional E-value: 0.41
     DUF5347   5 ldervdglnkvaklraklfkk.sdekeleeflkemRdkr 42 
                  ++r++ +  +akl akl    ++++ l +f +++R++ 
  KOO20824.1 267 HKQRQREVACAAKLAAKLQPYvDCQQSLVDFEAQVREQA 305
                 578889999999999988776699********9999976 PP

  == domain 2  score: 9.5 bits;  conditional E-value: 0.00053
     DUF5347  36 kemRdkrdekykenkrvlsaifyLAeiekerhelkf 71 
                 + mR+ + ++++ n+r+l+ai+ + ++ ++ h+lk 
  KOO20824.1 339 AAMRQ-KGHTMQTNTRMLGAILNMIKVARAAHSLKE 373
                 57888.5678999****************9999874 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (462 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       754  (0.0420548); expected 358.6 (0.02)
Passed bias filter:                      457  (0.0254894); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.52u 0.26s 00:00:00.78 Elapsed: 00:00:00.43
# Mc/sec: 3228.72
//
Query:       KOO20825.1  [L=763]
Description: putative e3 ubiquitin-protein ligase log2-like protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.6e-15   56.6   9.0    3.1e-15   55.8   9.0    1.5  1  zf-C3HC4_3   Zinc finger, C3HC4 type (RING finger)
    9.8e-08   31.7   7.8    2.3e-07   30.6   7.8    1.7  1  zf-C3HC4     Zinc finger, C3HC4 type (RING finger)
    2.2e-06   27.5  15.1     0.0057   16.4   5.5    2.4  2  Tmemb_185A   Transmembrane Fragile-X-F protein
      7e-06   26.3   9.9    1.3e-05   25.4   9.9    1.5  1  zf-RING_2    Ring finger domain
    2.6e-05   24.1   9.8    5.4e-05   23.1   9.8    1.5  1  zf-RING_5    zinc-RING finger domain
    5.1e-05   23.0   8.7    0.00011   22.0   8.7    1.6  1  zf-C3HC4_2   Zinc finger, C3HC4 type (RING finger)
    0.00043   20.1   8.3     0.0009   19.1   8.3    1.5  1  Prok-RING_4  Prokaryotic RING finger family 4
  ------ inclusion threshold ------
      0.034   13.3   0.2      0.053   12.7   0.2    1.2  1  DUF2457      Protein of unknown function (DUF2457)
        5.1    7.1   7.6          2    8.5   2.0    2.3  2  DUF1644      Protein of unknown function (DUF1644)
        9.2    6.2   9.4         22    4.9   9.4    1.6  1  zf-RING_4    RING/Ubox like zinc-binding domain


Domain annotation for each model (and alignments):
>> zf-C3HC4_3  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.8   9.0   1.7e-18   3.1e-15       2      50 .]     643     692 ..     642     692 .. 0.95

  Alignments for each domain:
  == domain 1  score: 55.8 bits;  conditional E-value: 1.7e-18
                 GSB-TTTSSSBS-EEETTEEEEEE-HHHHHHHHH.TT-B-TTT--B--EE CS
  zf-C3HC4_3   2 deeCviClerprnvvllpCgHlvlCeeCaekllk.rkkkCpiCrrpiekv 50 
                 +++C+iC+++pr++vll+CgH  +C+ Ca+++l+ ++++Cp+Cr+p+ +v
  KOO20825.1 643 ESKCLICFTEPRDAVLLECGHGGICYGCARRCLRsKRRECPMCRQPVAQV 692
                 689******************************99***********9875 PP

>> zf-C3HC4  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.6   7.8   1.3e-10   2.3e-07       1      41 []     646     685 ..     646     685 .. 0.98

  Alignments for each domain:
  == domain 1  score: 30.6 bits;  conditional E-value: 1.3e-10
                 -TTT-S--SS-E.E-TTS--.B-CHHHHHHHHCTSSB--TTT CS
    zf-C3HC4   1 CpiCleeakepnelleCkHs.fCskCirkilksrkkvkCPlC 41 
                 C iC++e+ +++ lleC+H  +C+ C r++l+ +k ++CP+C
  KOO20825.1 646 CLICFTEPRDAV-LLECGHGgICYGCARRCLR-SKRRECPMC 685
                 99**********.*******9***********.99999**** PP

>> Tmemb_185A  Transmembrane Fragile-X-F protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   5.5   3.2e-06    0.0057       2     101 ..      60     158 ..      29     171 .. 0.75
   2 !   16.2   2.0   3.6e-06    0.0064       2     101 ..     196     297 ..     195     320 .. 0.72

  Alignments for each domain:
  == domain 1  score: 16.4 bits;  conditional E-value: 3.2e-06
  Tmemb_185A   2 kldhevswswavVFlPlWiflalvalgaivaaivslslpaslpedrhwapfkavlit.......llllafelLlciklestyvklsaalswkivflPll 93 
                 kl++   +sw +VF+PlW+  a+ +l   +   +  ++++      h +  ++v++        +++ +f++Ll  + +      ++ ls  iv +P +
  KOO20825.1  60 KLNDVGIYSWFWVFAPLWASDAITMLTSTFELRRCYNMQS----IGHTTRRNSVIAQlgrlkgsVCVTVFKILLALRQDGL----WPGLSVLIVCSPYF 150
                 6777777899999999999999888887754444444444....5555556666666666778788888888888776655....55788888888888 PP

  Tmemb_185A  94 alevvslv 101
                 +  v++ +
  KOO20825.1 151 VAAVLRFC 158
                 88887776 PP

  == domain 2  score: 16.2 bits;  conditional E-value: 3.6e-06
  Tmemb_185A   2 kldhevswswavVFlPlWiflalvalgaivaaivslslpaslpedrhwapfkavlit....llllafelLlciklestyvklsaalswkivflPllale 96 
                 + d+  ++ w + F PlW + +l++l+ i+a++  + +   l++dr     +a++ +    ll +++  L +  + ++  +   +++++ +++Pl++ +
  KOO20825.1 196 RADGLNKLTWTATFWPLWCIFGLLVLASIAATVLAVGI--VLAHDRPDLGQRALFFLcyafLLTVTLTGLTFLVALAQRLDGDLSVPYEAILSPLIVGY 292
                 567778899*************9999999555555444..44666666666665555554466667777766666666666677899999999999887 PP

  Tmemb_185A  97 vvslv 101
                  + l+
  KOO20825.1 293 SLLLA 297
                 66555 PP

>> zf-RING_2  Ring finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.4   9.9   7.4e-09   1.3e-05       2      44 .]     645     686 ..     644     686 .. 0.87

  Alignments for each domain:
  == domain 1  score: 25.4 bits;  conditional E-value: 7.4e-09
   zf-RING_2   2 eCpICleelssadsvlllpCgHv.fhreClerwlrssst.CPlCr 44 
                 +C IC+   +++++++ll+CgH  +++ C++r lrs+++ CP+Cr
  KOO20825.1 645 KCLICF---TEPRDAVLLECGHGgICYGCARRCLRSKRReCPMCR 686
                 7****6...6666667677***99***********9999*****9 PP

>> zf-RING_5  zinc-RING finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.1   9.8     3e-08   5.4e-05       1      44 []     645     687 ..     645     687 .. 0.95

  Alignments for each domain:
  == domain 1  score: 23.1 bits;  conditional E-value: 3e-08
   zf-RING_5   1 hCnkCfeklskeekfyltsCgHi.fCekClkkll.ekeavCpiCrk 44 
                 +C +Cf++    ++++l++CgH  +C  C++++l  k+++Cp+Cr+
  KOO20825.1 645 KCLICFTEP---RDAVLLECGHGgICYGCARRCLrSKRRECPMCRQ 687
                 699999999...**********99********************97 PP

>> zf-C3HC4_2  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.0   8.7     6e-08   0.00011       1      40 []     645     685 ..     645     685 .. 0.95

  Alignments for each domain:
  == domain 1  score: 22.0 bits;  conditional E-value: 6e-08
  zf-C3HC4_2   1 kCpiCldmlkdpsvvtpCgHv.fCqkCilrsLeekn.eCPlC 40 
                 kC iC+ +  d+ v+ +CgH+  C+ C +r L++k  eCP+C
  KOO20825.1 645 KCLICFTEPRDA-VLLECGHGgICYGCARRCLRSKRrECPMC 685
                 7**********9.999****648*************9***** PP

>> Prok-RING_4  Prokaryotic RING finger family 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.1   8.3     5e-07    0.0009       1      40 [.     646     689 ..     646     694 .. 0.87

  Alignments for each domain:
  == domain 1  score: 19.1 bits;  conditional E-value: 5e-07
  Prok-RING_4   1 CvlCgeqekkailepCgHl.vCkeCfdskdls...sCPlCqrri 40 
                  C++C +++++a+l  CgH  +C  C      s    CP+C++ +
   KOO20825.1 646 CLICFTEPRDAVLLECGHGgICYGCARRCLRSkrrECPMCRQPV 689
                  ***********************9999884444569*****976 PP

>> DUF2457  Protein of unknown function (DUF2457)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.2   2.9e-05     0.053     109     167 ..     421     476 ..     398     502 .. 0.74

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 2.9e-05
     DUF2457 109 EaGFAdSdeeddedddlelWtpkastaatsaekleqlatklerrlSveesSisslesak 167
                  aGFA+Sde +  ++d+e W+   ++++++ +++++ +++  rr+S +  S ++++s+k
  KOO20825.1 421 SAGFASSDEYEALEKDIESWVR--TQQQQHRARVRKPQAPPGRRTS-AAVSPAAADSTK 476
                 58******************98..55666666777789999****9.555555554433 PP

>> DUF1644  Protein of unknown function (DUF1644)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.5   2.0    0.0011         2       1      21 [.     642     662 ..     642     677 .. 0.80
   2 ?    1.2   0.6      0.19   3.5e+02      84      99 ..     677     692 ..     671     697 .. 0.77

  Alignments for each domain:
  == domain 1  score: 8.5 bits;  conditional E-value: 0.0011
     DUF1644   1 eevsCpiClehPhnavlllCs 21 
                 +e +C iC+  P +avll C 
  KOO20825.1 642 DESKCLICFTEPRDAVLLECG 662
                 6789****************6 PP

  == domain 2  score: 1.2 bits;  conditional E-value: 0.19
     DUF1644  84 saelkCPlCrGevkgw 99 
                 s++ +CP+Cr  v + 
  KOO20825.1 677 SKRRECPMCRQPVAQV 692
                 55679*****999875 PP

>> zf-RING_4  RING/Ubox like zinc-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.9   9.4     0.012        22      19      46 ..     660     688 ..     646     689 .. 0.86

  Alignments for each domain:
  == domain 1  score: 4.9 bits;  conditional E-value: 0.012
   zf-RING_4  19 eCgy.qiClfCyhrileeeegrCPaCree 46 
                 eCg+  iC  C +r l+++   CP Cr++
  KOO20825.1 660 ECGHgGICYGCARRCLRSKRRECPMCRQP 688
                 688745*********************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (763 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       827  (0.0461264); expected 358.6 (0.02)
Passed bias filter:                      443  (0.0247086); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.69u 0.29s 00:00:00.98 Elapsed: 00:00:00.48
# Mc/sec: 4785.95
//
Query:       KOO20826.1  [L=134]
Description: calmodulin-like protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.4e-19   66.9   8.4    1.5e-07   30.4   0.2    3.5  4  EF-hand_1  EF hand
    1.1e-16   60.4   4.4      4e-11   42.6   0.2    3.2  3  EF-hand_8  EF-hand domain pair
      5e-16   58.9   2.9    8.2e-12   45.4   0.1    2.8  3  EF-hand_7  EF-hand domain pair
    1.2e-15   56.0   2.5    1.1e-06   28.1   0.2    3.5  3  EF-hand_6  EF-hand domain
    2.5e-08   33.1  12.1    0.00024   20.5   0.5    3.6  5  EF-hand_5  EF hand
    3.1e-07   30.6   0.1    1.1e-06   28.9   0.0    1.9  2  EF-hand_9  EF-hand domain
    3.9e-05   23.5   0.3    0.00012   21.9   0.1    1.9  2  EF-hand_4  Cytoskeletal-regulatory complex EF hand
  ------ inclusion threshold ------
      0.054   13.5   0.0      0.089   12.8   0.0    1.3  1  UPF0154    Uncharacterised protein family (UPF0154)


Domain annotation for each model (and alignments):
>> EF-hand_1  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   0.0       4.4   9.8e+03      17      24 ..       7      14 ..       6      15 .. 0.66
   2 !   29.7   0.2   1.2e-10   2.7e-07       1      29 []      43      71 ..      43      71 .. 0.96
   3 !   30.4   0.2   6.8e-11   1.5e-07       1      28 [.      79     106 ..      79     107 .. 0.94
   4 !   11.2   0.1   9.5e-05      0.21       5      27 ..     109     131 ..     106     133 .. 0.83

  Alignments for each domain:
  == domain 1  score: -3.4 bits;  conditional E-value: 4.4
                EEHHHHHH CS
   EF-hand_1 17 IdfeEfke 24
                ++++E+ +
  KOO20826.1  7 LELDELAR 14
                66788765 PP

  == domain 2  score: 29.7 bits;  conditional E-value: 1.2e-10
                HHHHHHHHHTTTSSSEEEHHHHHHHHHHH CS
   EF-hand_1  1 elkeiFrefDkDgdGkIdfeEfkellkkl 29
                e++eiF+++D D+ G+I+++E+ +l+k+l
  KOO20826.1 43 EFREIFNLVDLDKGGTISKDELGQLMKTL 71
                79************************985 PP

  == domain 3  score: 30.4 bits;  conditional E-value: 6.8e-11
                 HHHHHHHHHTTTSSSEEEHHHHHHHHHH CS
   EF-hand_1   1 elkeiFrefDkDgdGkIdfeEfkellkk 28 
                 el+ + +e+D Dg+G Idf+Ef++++++
  KOO20826.1  79 ELNAMVAEIDADGSGEIDFDEFVTVMSR 106
                 7899**********************86 PP

  == domain 4  score: 11.2 bits;  conditional E-value: 9.5e-05
                 HHHHHTTTSSSEEEHHHHHHHHH CS
   EF-hand_1   5 iFrefDkDgdGkIdfeEfkellk 27 
                 + + +  D +G +++ Ef+++++
  KOO20826.1 109 LLSQIEPDENGMVNYLEFVDMMT 131
                 55666689**************8 PP

>> EF-hand_8  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   0.3   1.9e-06    0.0043      27      53 ..      43      69 ..      40      71 .. 0.91
   2 !   42.6   0.2   1.8e-14     4e-11       2      53 ..      56     105 ..      55     107 .. 0.95
   3 !   13.3   0.1   2.6e-05     0.058      31      53 ..     109     131 ..     107     133 .. 0.91

  Alignments for each domain:
  == domain 1  score: 16.9 bits;  conditional E-value: 1.9e-06
   EF-hand_8 27 evdilfrefDtdgdGkisfeEFcvlle 53
                e++++f+++D+d+ G+is++E  +l++
  KOO20826.1 43 EFREIFNLVDLDKGGTISKDELGQLMK 69
                99*******************988886 PP

  == domain 2  score: 42.6 bits;  conditional E-value: 1.8e-14
   EF-hand_8   2 kgkItreelrrilrilglkkglseeevdilfrefDtdgdGkisfeEFcvlle 53 
                 +g I+++el   +++lglk   + ee+ +++ e+D dg+G i+f+EF+ ++ 
  KOO20826.1  56 GGTISKDELGQLMKTLGLK--PTQEELNAMVAEIDADGSGEIDFDEFVTVMS 105
                 89*****************..***************************9985 PP

  == domain 3  score: 13.3 bits;  conditional E-value: 2.6e-05
   EF-hand_8  31 lfrefDtdgdGkisfeEFcvlle 53 
                 l++ +  d++G++++ EF+++++
  KOO20826.1 109 LLSQIEPDENGMVNYLEFVDMMT 131
                 899999***************97 PP

>> EF-hand_7  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.2   0.3   2.7e-07   0.00061      16      71 .]       4      69 ..       2      69 .. 0.72
   2 !   45.4   0.1   3.7e-15   8.2e-12       3      70 ..      43     104 ..      41     105 .. 0.94
   3 !    7.8   0.0    0.0021       4.7      48      70 ..     108     130 ..     104     131 .. 0.87

  Alignments for each domain:
  == domain 1  score: 20.2 bits;  conditional E-value: 2.7e-07
   EF-hand_7 16 dgyldkeellrllrkifqga............gegsklsdeelellfkefDtdkdGvisfdEFlklyr 71
                +  l+ +el rl +  + +              e+++l++   +++f+ +D+dk G+is dE+ +l++
  KOO20826.1  4 RDQLELDELARLREEVSLAQeqlkcakdnaarWEAEELTE--FREIFNLVDLDKGGTISKDELGQLMK 69
                5677788888755544444455555555555577777666..********************998885 PP

  == domain 2  score: 45.4 bits;  conditional E-value: 3.7e-15
   EF-hand_7   3 klkeaFkelDtdgdgyldkeellrllrkifqgagegsklsdeelellfkefDtdkdGvisfdEFlkly 70 
                 + +e+F++ D d+ g ++k+el +l++        g k+++eel +++ e+D d++G+i+fdEF++ +
  KOO20826.1  43 EFREIFNLVDLDKGGTISKDELGQLMK------TLGLKPTQEELNAMVAEIDADGSGEIDFDEFVTVM 104
                 57899**********************......899999**************************998 PP

  == domain 3  score: 7.8 bits;  conditional E-value: 0.0021
   EF-hand_7  48 llfkefDtdkdGvisfdEFlkly 70 
                 +l+  +  d +G +++ EF+ ++
  KOO20826.1 108 ELLSQIEPDENGMVNYLEFVDMM 130
                 67888999************998 PP

>> EF-hand_6  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.1   0.2   4.8e-10   1.1e-06       1      31 []      43      72 ..      43      73 .. 0.94
   2 !   20.6   0.1   1.2e-07   0.00027       2      28 ..      80     106 ..      79     114 .. 0.87
   3 !    5.9   0.0    0.0065        14      12      27 ..     116     131 ..     107     133 .. 0.87

  Alignments for each domain:
  == domain 1  score: 28.1 bits;  conditional E-value: 4.8e-10
   EF-hand_6  1 elreaFklfDkdgdGkidaeElrkalrkalg 31
                e+re+F+l D d+ G+i+++El ++++  lg
  KOO20826.1 43 EFREIFNLVDLDKGGTISKDELGQLMK-TLG 72
                79*************************.565 PP

  == domain 2  score: 20.6 bits;  conditional E-value: 1.2e-07
   EF-hand_6   2 lreaFklfDkdgdGkidaeElrkalrk 28 
                 l++   ++D dg+G+id++E++ ++++
  KOO20826.1  80 LNAMVAEIDADGSGEIDFDEFVTVMSR 106
                 6777789****************9985 PP

  == domain 3  score: 5.9 bits;  conditional E-value: 0.0065
   EF-hand_6  12 dgdGkidaeElrkalr 27 
                 d +G +++ E++++++
  KOO20826.1 116 DENGMVNYLEFVDMMT 131
                 88*************8 PP

>> EF-hand_5  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.1       3.5   7.8e+03      18      23 ..       9      14 ..       7      15 .. 0.67
   2 !   19.4   0.3   2.4e-07   0.00053       2      25 .]      45      68 ..      44      68 .. 0.92
   3 ?   -2.2   0.0       1.6   3.5e+03      19      25 .]      78      84 ..      76      84 .. 0.77
   4 !   20.5   0.5   1.1e-07   0.00024       7      25 .]      86     104 ..      80     104 .. 0.90
   5 ?   -1.2   0.0      0.77   1.7e+03       7      23 ..     112     128 ..     106     130 .. 0.63

  Alignments for each domain:
  == domain 1  score: -3.3 bits;  conditional E-value: 3.5
                HHHHHH CS
   EF-hand_5 18 keELkt 23
                 +EL +
  KOO20826.1  9 LDELAR 14
                578877 PP

  == domain 2  score: 19.4 bits;  conditional E-value: 2.4e-07
                HHHHHHH-SS-SSCE-HHHHHHHH CS
   EF-hand_5  2 kdtFqaiDlNgDGkIskeELktlv 25
                ++ F+ +Dl++ G+Isk+EL +l+
  KOO20826.1 45 REIFNLVDLDKGGTISKDELGQLM 68
                678*****************9987 PP

  == domain 3  score: -2.2 bits;  conditional E-value: 1.6
                HHHHHHH CS
   EF-hand_5 19 eELktlv 25
                eEL ++v
  KOO20826.1 78 EELNAMV 84
                9999875 PP

  == domain 4  score: 20.5 bits;  conditional E-value: 1.1e-07
                 HH-SS-SSCE-HHHHHHHH CS
   EF-hand_5   7 aiDlNgDGkIskeELktlv 25 
                 +iD++g+G I+++E+ t++
  KOO20826.1  86 EIDADGSGEIDFDEFVTVM 104
                 69*************9986 PP

  == domain 5  score: -1.2 bits;  conditional E-value: 0.77
                 HH-SS-SSCE-HHHHHH CS
   EF-hand_5   7 aiDlNgDGkIskeELkt 23 
                 +i  +  G ++  E+  
  KOO20826.1 112 QIEPDENGMVNYLEFVD 128
                 55556777777777755 PP

>> EF-hand_9  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.9   0.0   4.9e-10   1.1e-06       3      64 ..      47     106 ..      45     108 .. 0.96
   2 ?   -1.1   0.0       1.1   2.5e+03      39      62 ..     108     130 ..     105     132 .. 0.72

  Alignments for each domain:
  == domain 1  score: 28.9 bits;  conditional E-value: 4.9e-10
   EF-hand_9   3 vFevcDtqktGrVpvsrlidyLravtaqdpeeseLeelakelDPdgedasvdldtflrvmre 64 
                 +F++ D +k G++   +l ++++  +  +p+  eL+   +e+D dg  +++d+d f +vm++
  KOO20826.1  47 IFNLVDLDKGGTISKDELGQLMKTLGL-KPTQEELNAMVAEIDADGS-GEIDFDEFVTVMSR 106
                 7**************************.9******************.************97 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 1.1
   EF-hand_9  39 elakelDPdgedasvdldtflrvm 62 
                 el +++ Pd++ + v+   f  +m
  KOO20826.1 108 ELLSQIEPDEN-GMVNYLEFVDMM 130
                 56677788887.777777777777 PP

>> EF-hand_4  Cytoskeletal-regulatory complex EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.9   0.1   5.5e-08   0.00012       3      69 ..      35     104 ..      33     113 .. 0.79
   2 ?   -1.3   0.0      0.95   2.1e+03      55      69 ..     116     130 ..     106     131 .. 0.74

  Alignments for each domain:
  == domain 1  score: 21.9 bits;  conditional E-value: 5.5e-08
   EF-hand_4   3 kleeleikkyweifsglk.pednkltgdkvapvlknskleedk..lekiwdladidedgkldfeefciam 69 
                 + e+ e+ ++ eif+ ++ ++  ++++d++ +++k   l+  +  l+ +    d d  g++df+ef+ +m
  KOO20826.1  35 RWEAEELTEFREIFNLVDlDKGGTISKDELGQLMKTLGLKPTQeeLNAMVAEIDADGSGEIDFDEFVTVM 104
                 67899999******9887345679************999865511555555555556679*******999 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 0.95
   EF-hand_4  55 dedgkldfeefciam 69 
                 de+g++++ ef+ +m
  KOO20826.1 116 DENGMVNYLEFVDMM 130
                 788999999998666 PP

>> UPF0154  Uncharacterised protein family (UPF0154)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0     4e-05     0.089      29      58 ..      58      87 ..      51      89 .. 0.88

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 4e-05
     UPF0154 29 pinekmirammkqmGrkPSekqikqvmrsm 58
                 i+++ + ++mk  G kP++  ++ +++++
  KOO20826.1 58 TISKDELGQLMKTLGLKPTQEELNAMVAEI 87
                799999********************9987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (134 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       675  (0.0376485); expected 358.6 (0.02)
Passed bias filter:                      490  (0.02733); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.45u 0.27s 00:00:00.72 Elapsed: 00:00:00.43
# Mc/sec: 938.48
//
Query:       KOO20827.1  [L=1719]
Description: ornithine aminotransferase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   3.7e-112  375.0   0.0   8.6e-112  373.7   0.0    1.5  2  Aminotran_3      Aminotransferase class-III
    6.6e-62  209.1   0.0      1e-61  208.4   0.0    1.3  1  Orn_Arg_deC_N    Pyridoxal-dependent decarboxylase, pyridoxal
    1.3e-16   60.7   0.5    0.00041   20.6   0.0    4.6  4  PDZ_2            PDZ domain
    4.6e-16   58.4   7.6    2.6e-08   33.6   0.2    4.6  4  PDZ_6            PDZ domain
    1.7e-15   57.1   1.6    5.4e-07   29.9   0.0    4.4  4  PDZ              PDZ domain
    1.1e-13   51.9   0.0    1.8e-13   51.1   0.0    1.3  1  DUF563           Protein of unknown function (DUF563)
    1.4e-11   44.5   0.0    4.9e-11   42.7   0.0    1.9  1  Orn_DAP_Arg_deC  Pyridoxal-dependent decarboxylase, C-termina
     0.0073   16.3   0.3         23    5.0   0.0    3.8  4  Tricorn_PDZ      Tricorn protease PDZ domain


Domain annotation for each model (and alignments):
>> Aminotran_3  Aminotransferase class-III
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.7   0.0       1.6   3.5e+03      18      63 ..      37      82 ..      33      96 .. 0.81
   2 !  373.7   0.0  3.9e-115  8.6e-112       6     404 ..    1330    1712 ..    1326    1713 .. 0.96

  Alignments for each domain:
  == domain 1  score: -3.7 bits;  conditional E-value: 1.6
                 BTEEEETTS-EEEESSHHHHTTTT-BT-HHHHHHHHHHHTT-S--- CS
  Aminotran_3 18 GvyltdvdgkrylDlvssiavvnlGhahPkvvkavkeqaaklshvs 63
                 G   +d +++  + +v+ ++v n+  ah ++++a+k++a  l ++ 
   KOO20827.1 37 GGQDEDSEDEPTIVFVARYSVKNFFLAHYDLLQALKSAAVGLALTP 82
                 555678888999999*********************9998887776 PP

  == domain 2  score: 373.7 bits;  conditional E-value: 3.9e-115
                   B--SCEEEEEEEBTEEEETTS-EEEESSHHHHTTTT-BT-HHHHHHHHHHHTT-S---TTTCEEHHHHHHHHHHHHHCT-..SEEEEESSHHHHHH CS
  Aminotran_3    6 ednlllvitkaeGvyltdvdgkrylDlvssiavvnlGhahPkvvkavkeqaaklshvsfgaltnepalklaekllklapkgldkvflansGseAve 101 
                   + +l++v++++ Gv ++d  g+rylD++s++++vn+Gh+hPk+++a++ qaakl+++s +a++n+ + + ++ +++ ++   d+v+ +n+G e  e
   KOO20827.1 1330 YAPLPVVLERGLGVHVWDISGRRYLDFLSAYSAVNQGHSHPKILDALQRQAAKLTLTS-RAFHNNVLGEYERFVTEYFGY--DRVLPMNTGVEGGE 1422
                   567789****************************************************.*********************..************** PP

                   HHHHHHHHHHHHTS..HCTT-EEEEETTT---SSHHHHHHSS--TTTTTTCTTB-TSEEEE-TTBGGGTB-HHHHHHHHHHHHHHHHCHTCCCEEE CS
  Aminotran_3  102 tAlKlarkyarekk..atektkiiafkgafHGrtlgalsvtgskkkyktlfgpflpevvrlkypdeevlkeneeeeaalleelealekkkkdevaA 195 
                   tAlKlar++ + +k  a+  + ++ ++++f Grt  a s +++ + ++++fgp lp+v+ ++y+d              l +lea  ++    +a+
   KOO20827.1 1423 TALKLARRWGYDVKgiAKDEALVLFCTHNFWGRTISACSSSSD-PSCRAGFGPYLPGVPLVPYND--------------LAALEAAFAQDGARIAG 1503
                   ************9977777778999****************99.********************9..............3458888899******* PP

                   EEE-SCETTTTSEB--CCHHHHHHHHHHHHT-EEEEE-TTTTTTTTSSSSGGGGCTS--SEEEE-GGGGTT.SS-EEEEEEHHHHTTS-TTSB--T CS
  Aminotran_3  196 vivEpiqgegGvvvaspeflaklrelckkhdvllivDEvqtGfGrTGklfAlehagvspDlmtlaKaltgG.lplsavlataevmqalapgshgsT 290 
                   +++Epiqge+Gvvv+ +++l+++relc++++vl+i+DEvqtG+ rTGk+ A++h  v+pDl++l+Kal+gG +p+savl  +evm +l+pg+hgsT
   KOO20827.1 1504 FMLEPIQGEAGVVVPHEGYLRGVRELCTRYNVLMIADEVQTGLCRTGKMLACDHEHVKPDLLILGKALSGGvYPVSAVLSSDEVMLTLRPGEHGST 1599
                   ************************************************************************************************ PP

                   TTT-HHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHCTT-TTEEEEEEETTEEEEEEBCCCETTC.HHHHHHHHHCTEE-EEETTTEEEE- CS
  Aminotran_3  291 fgGnplacavalavleiieeekllenaqelgaalkegLeelqkkyevikevRgkGlmiaielkeeaevke.keilkkakekGvlilsaGdnvirll 385 
                   fgGnpl cava+a+le++ ee l+ena+ +g++l++gL ++ ++   + +vRg+Gl+ ai +  e e+++  +++ ++k+ G+l +++++++irl+
   KOO20827.1 1600 FGGNPLGCAVAMAALEVLREERLAENAALMGERLRAGLAAIGSD--AVTTVRGRGLLNAIVIRPEGEKRNaGALCYALKDVGLLAKPTHEHIIRLA 1693
                   ******************************************66..6*************8888877555688*********************** PP

                   --TT--HHHHHHHHHHHHH CS
  Aminotran_3  386 ppliitdeeidelleilkk 404 
                   ppliit ++ide++ei+ k
   KOO20827.1 1694 PPLIITGAQIDEAVEIIAK 1712
                   ****************975 PP

>> Orn_Arg_deC_N  Pyridoxal-dependent decarboxylase, pyridoxal binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  208.4   0.0   4.6e-65     1e-61       2     246 ..     904    1145 ..     903    1146 .. 0.96

  Alignments for each domain:
  == domain 1  score: 208.4 bits;  conditional E-value: 4.6e-65
                     HHHHHHHHHHHHHCTCCEEEEEGGG---HHHHHHHHHTTEEEEESSHHHHHHHHHCTTTGGGEEEEESS--HHHHHHHHHCTHTEEEESSHHHH CS
  Orn_Arg_deC_N    2 asierklkrwkkalprikvfYavKansdlavlellaelGlgldcaSkaElelvlaagvsperiifanpckqreelryalekgvkvvtvdnveel 95  
                     ++++r + +w++a+pr+++fYa+K+ + +a++ +la  G+g+dcaS aE++l+l agvsp+riifa+p+k   ++r a++kgv + t+d+  el
     KOO20827.1  904 GNVQRLYDSWHTAMPRVTPFYAMKCSPMPALIDVLAVNGCGFDCASAAEIQLALDAGVSPDRIIFAHPAKRPFDIRFAASKGVCMTTFDSIVEL 997 
                     789999**************************************************************************************** PP

                     HHHHHHHCCEEEEEEEE-SCCSSSSTCCCSSSTTSSSSEEHCHHHHHHHHHHHHTTEEEEEEE---BSSC-SCHHHHHHHHHHHHHHHHHHHHT CS
  Orn_Arg_deC_N   96 eklaklapeakvllRiktdvsaatcelistggessKFGaaleeavealleaakeenlqlvGvsfHvGSgvsdleafvkavekalklfdelaelG 189 
                     +k+ak +p+a+ +lRi+ d+ +a  ++        K+Ga+l ++ e+l   ak  +l+++GvsfHvGS ++  +af++a+e a+k+fd ++  G
     KOO20827.1  998 DKIAKWHPNAQCVLRIRADDPEAGISF------GIKYGANL-DEYETLISHAKDIGLDMIGVSFHVGSLAKSGKAFYRAIECARKAFDVGTACG 1084
                     ***************************......********.99************************************************** PP

                     ---SEEE--S-B.S-HCSTTSSSSTHHHHHHHHHHHHHHHHH...TSSS-EEEE--SHHHH CS
  Orn_Arg_deC_N  190 vklkiLdvGGGf.gveyeeeeeplkleeiaekirealeeafp...gdkevtiiaEpGRalv 246 
                     ++  +Ld+GGGf g   + +  ++++ ei   i+eale++f     + ++++iaEpGR+++
     KOO20827.1 1085 FHFSLLDIGGGFtGRFNSFGIVQSMVGEIPAYINEALEKFFGadtPFGDLRVIAEPGRFFA 1145
                     ************6655566788999****************97777889**********97 PP

>> PDZ_2  PDZ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.7   0.1       0.3   6.7e+02      31      72 ..     297     352 ..     274     358 .. 0.52
   2 !   20.6   0.0   1.8e-07   0.00041       3      60 ..     373     429 ..     371     440 .. 0.87
   3 !   14.7   0.0   1.3e-05      0.03       2      44 ..     530     572 ..     529     585 .. 0.90
   4 !   18.4   0.0   9.3e-07    0.0021      25      69 ..     645     691 ..     624     696 .. 0.89

  Alignments for each domain:
  == domain 1  score: 0.7 bits;  conditional E-value: 0.3
                 .--TT-EEEEETTB--......SSHHHHH........HHHHTS-TT-EEEEEEEET CS
       PDZ_2  31 glkagDvilkvdgkkv......ksledli........slllkkkpGdtVkltvlRd 72 
                 ++ +gD il+++g ++      ++le  +        ++   + p++tV+ltv+ +
  KOO20827.1 297 DISIGDCILAIEGLELlypggpEKLEAARqvladpteGEEDPHAPQQTVELTVEKN 352
                 57777777777776654443332222222333333333333566777777777766 PP

  == domain 2  score: 20.6 bits;  conditional E-value: 1.8e-07
                 ..XX------..-EEEEEE-TTSGGGGT..--TT-EEEEETTB--SSHHHHHHHHHTS- CS
       PDZ_2   3 lGvsvsdeedtggvlvvsVkeggPaakag.lkagDvilkvdgkkvksledlislllkkk 60 
                 lG ++  e++   ++v + +++g a+k+g +++gD+++ ++g++vk+le+ i+ll++ +
  KOO20827.1 373 LGLTLCLEDS--HIVVSEMDPKGLASKQGrIATGDRLVGINGRAVKDLEHAIELLQSDD 429
                 7888888888..999**************************************999543 PP

  == domain 3  score: 14.7 bits;  conditional E-value: 1.3e-05
                 ...XX------..-EEEEEE-TTSGGGGT.--TT-EEEEETTB CS
       PDZ_2   2 ylGvsvsdeedtggvlvvsVkeggPaakaglkagDvilkvdgk 44 
                  + v+++ +e tg++++ ++ +++Pa+ ag + gD++l++ g 
  KOO20827.1 530 RICVTFRAHEVTGELIISQIGSNSPAQIAGAEVGDRVLALQGS 572
                 57799999999****************************9986 PP

  == domain 4  score: 18.4 bits;  conditional E-value: 9.3e-07
                 SGGGGT..--TT-EEEEETTB--SSHHHHHHHHH.TS-TT-EEEEEE CS
       PDZ_2  25 gPaakag.lkagDvilkvdgkkvksledlislll.kkkpGdtVkltv 69 
                 g aak+g ++ gD+i++v+g +v+  e+l+  ++ + k ++ V ++v
  KOO20827.1 645 GAAAKSGkFALGDRIVAVNGIRVNHAETLQAHIAeFCKRDEYVDFEV 691
                 57899999**************************9999999998876 PP

>> PDZ_6  PDZ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.1   0.1      0.39   8.8e+02      18      28 ..     300     310 ..     297     313 .. 0.83
   2 !   33.6   0.2   1.2e-11   2.6e-08       1      53 [.     385     436 ..     385     438 .. 0.94
   3 !   10.3   0.2   0.00022      0.49       2      28 ..     546     572 ..     545     585 .. 0.81
   4 !   15.0   0.0   7.3e-06     0.016       9      39 ..     645     674 ..     639     681 .. 0.82

  Alignments for each domain:
  == domain 1  score: -0.1 bits;  conditional E-value: 0.39
       PDZ_6  18 vGDiilsvNGq 28 
                 +GD+il++ G 
  KOO20827.1 300 IGDCILAIEGL 310
                 7*******995 PP

  == domain 2  score: 33.6 bits;  conditional E-value: 1.2e-11
       PDZ_6   1 vVtaVdpgsPAdrAG.lrvGDiilsvNGqpveglsladvaallrgsagesvvlv 53 
                 vV++ dp + A + G +  GD+++ +NG+ v  ++l+++++ll+++  ++++++
  KOO20827.1 385 VVSEMDPKGLASKQGrIATGDRLVGINGRAV--KDLEHAIELLQSDDASELEVE 436
                 699****************************..***********9998888876 PP

  == domain 3  score: 10.3 bits;  conditional E-value: 0.00022
       PDZ_6   2 VtaVdpgsPAdrAGlrvGDiilsvNGq 28 
                 ++++  +sPA  AG +vGD++l++ G 
  KOO20827.1 546 ISQIGSNSPAQIAGAEVGDRVLALQGS 572
                 7888999***************98665 PP

  == domain 4  score: 15.0 bits;  conditional E-value: 7.3e-06
       PDZ_6   9 sPAdrAG.lrvGDiilsvNGqpveglsladva 39 
                 + A++ G +  GD+i++vNG+ v   + + ++
  KOO20827.1 645 GAAAKSGkFALGDRIVAVNGIRV--NHAETLQ 674
                 67999999***************..5555554 PP

>> PDZ  PDZ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.1       2.7     6e+03      44      55 ..     298     309 ..     294     312 .. 0.86
   2 !   29.9   0.0   2.4e-10   5.4e-07      10      67 ..     371     424 ..     363     440 .. 0.77
   3 !    7.9   0.1    0.0017       3.8      14      60 ..     533     584 ..     520     603 .. 0.71
   4 !   15.0   0.0   1.1e-05     0.024      28      68 ..     638     677 ..     604     685 .. 0.77

  Alignments for each domain:
  == domain 1  score: -2.3 bits;  conditional E-value: 2.7
                 SSTTEEEEEETT CS
         PDZ  44 lkvGDkIlsvNg 55 
                 +++GD Il++ g
  KOO20827.1 298 ISIGDCILAIEG 309
                 99*******987 PP

  == domain 2  score: 29.9 bits;  conditional E-value: 2.4e-10
                 SESSEEEEEETTSSSSSSEEEEEECTTSHHHHHT.SSTTEEEEEETTEETTTSHHHHHH CS
         PDZ  10 gglGfslkggsdqrgdkgifvsevlpggaaeadg.lkvGDkIlsvNgvdvenvsheeav 67 
                  +lG++l  +++     +i+vse+ p+g a ++g +  GD+++++Ng+ v++++h    
  KOO20827.1 371 DRLGLTLCLEDS-----HIVVSEMDPKGLASKQGrIATGDRLVGINGRAVKDLEHAIEL 424
                 566666666444.....8*********************************99886544 PP

  == domain 3  score: 7.9 bits;  conditional E-value: 0.0017
                 EEEEEETTSSSSSSEEEEEECTTSHHHHHTSSTTEEEEEETT........EETTT CS
         PDZ  14 fslkggsdqrgdkgifvsevlpggaaeadglkvGDkIlsvNg........vdven 60 
                 ++ +  +      ++++s++  +++a+ +g +vGD++l+  g        +d+en
  KOO20827.1 533 VTFRAHEVT---GELIISQIGSNSPAQIAGAEVGDRVLALQGsifeqggeEDLEN 584
                 555554444...489************************9994444444444444 PP

  == domain 4  score: 15.0 bits;  conditional E-value: 1.1e-05
                 EEEEEECTT.SHHHHHT.SSTTEEEEEETTEETTTSHHHHHHH CS
         PDZ  28 ifvsevlpg.gaaeadg.lkvGDkIlsvNgvdvenvsheeavq 68 
                 + +++   + gaa+++g    GD+I++vNg  v+  + ++a +
  KOO20827.1 638 VRITK---MvGAAAKSGkFALGDRIVAVNGIRVNHAETLQAHI 677
                 55555...5588999999*************999999888865 PP

>> DUF563  Protein of unknown function (DUF563)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.1   0.0   8.2e-17   1.8e-13     103     207 ..      46     152 ..       8     154 .. 0.79

  Alignments for each domain:
  == domain 1  score: 51.1 bits;  conditional E-value: 8.2e-17
      DUF563 103 kptrvlyisRlkagsRrilNeeevlkllp..krg..fevvdpeslsfeeqiklfssakvivgphGsgltnliFmppgttvielvppnrldnsfenlaal 197
                  p  ++++ R  + +  +l   ++l++l+    g  +  +++++ +f+eq++ f+ a v+ g+hG+g +n+iF+ p+++v el p +++++s+e ++a 
  KOO20827.1  46 EP-TIVFVAR-YSVKNFFLAHYDLLQALKsaAVGlaLTPLELADVPFAEQLQHFRRAAVVTGMHGAGYANIIFLAPRAVVAELCPLGYCTKSYERMSAR 142
                 45.6667777.33344444444555444433444335688899******************************************************** PP

      DUF563 198 lglkyayvlg 207
                 l+l y  +++
  KOO20827.1 143 LDLIYMRWTN 152
                 *****99987 PP

>> Orn_DAP_Arg_deC  Pyridoxal-dependent decarboxylase, C-terminal sheet domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.7   0.0   2.2e-14   4.9e-11       6      98 .]    1147    1253 ..     864    1253 .. 0.75

  Alignments for each domain:
  == domain 1  score: 42.7 bits;  conditional E-value: 2.2e-14
                       GGEEEEEEEEEEEEETC............EEEEEES--TTTS-HHHHCTT-S-EESBT...........T-SCEEC.EEEEEEEE-SSSSTT CS
                       xxxxxxxxxxxxxxxxx............xxxxxxxxxxxxxxxxxxxxxxxxxxxxx...........xxxxxxxxxxxxxxxxxxxxxxx RF
  Orn_DAP_Arg_deC    6 eagvLvtrViavkesek............kkfvivdaGmndllrpalygsfheipvke...........eeaekeeeeeeevdvvGptCesg 74  
                        ++ L+++V +v+++ +            +  + + +G+        ygsf  + v +           ++ ++ ++e ++++v+GptC+s+
       KOO20827.1 1147 ASMHLACHVHSVRNRVDrasaddpetlvpTCDYLISDGL--------YGSFNCV-VYDgakprawllpgPNLPPMDTELKRSTVFGPTCDSM 1229
                       677888888888875545677777777775667788888........9999666.3334566778888866667788999************ PP

                       -EEEEEEEEEE--TT-EEEESS-S CS
                       xxxxxxxxxxxxxxxxxxxxxxxx RF
  Orn_DAP_Arg_deC   75 DvlakdrelpelevGdllafedaG 98  
                       D++ kd++lp+l+vGd+l+f + G
       KOO20827.1 1230 DCVFKDVMLPQLRVGDWLLFPHFG 1253
                       ********************9887 PP

>> Tricorn_PDZ  Tricorn protease PDZ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.1   0.0      0.17   3.8e+02      40      61 ..     298     319 ..     296     326 .. 0.78
   2 ?    5.0   0.0      0.01        23      40      76 ..     401     437 ..     392     442 .. 0.85
   3 ?   -4.3   0.0         8   1.8e+04      31      52 ..     553     572 ..     550     577 .. 0.77
   4 ?    4.8   0.0     0.012        27      41      66 ..     654     679 ..     645     697 .. 0.84

  Alignments for each domain:
  == domain 1  score: 1.1 bits;  conditional E-value: 0.17
                  -.TT-EEEEETTEE-BTTB-HH CS
  Tricorn_PDZ  40 vreGdlilavdgepvskekgia 61 
                  ++ Gd+ila++g ++    g++
   KOO20827.1 298 ISIGDCILAIEGLELLYPGGPE 319
                  678*********9876655555 PP

  == domain 2  score: 5.0 bits;  conditional E-value: 0.01
                  -.TT-EEEEETTEE-BTTB-HHHHHHTTTTSEEEEEE CS
  Tricorn_PDZ  40 vreGdlilavdgepvskekgiaelLvgkagkeveLtv 76 
                  +++Gd ++ ++g+ v+  +   elL + + +e e+++
   KOO20827.1 401 IATGDRLVGINGRAVKDLEHAIELLQSDDASELEVEL 437
                  679**********************998887766665 PP

  == domain 3  score: -4.3 bits;  conditional E-value: 8
                  -GGGGGS---.TT-EEEEETTE CS
  Tricorn_PDZ  31 SPLaepGvnvreGdlilavdge 52 
                  SP +  G +  +Gd +la+ g 
   KOO20827.1 553 SPAQIAGAE--VGDRVLALQGS 572
                  677777777..7***9999986 PP

  == domain 4  score: 4.8 bits;  conditional E-value: 0.012
                  .TT-EEEEETTEE-BTTB-HHHHHHT CS
  Tricorn_PDZ  41 reGdlilavdgepvskekgiaelLvg 66 
                  + Gd i+av+g +v++ + ++ ++++
   KOO20827.1 654 ALGDRIVAVNGIRVNHAETLQAHIAE 679
                  56**************9999988775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1719 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       518  (0.0288917); expected 358.6 (0.02)
Passed bias filter:                      470  (0.0262145); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.94u 0.34s 00:00:01.28 Elapsed: 00:00:00.49
# Mc/sec: 10511.75
//
Query:       KOO20828.1  [L=582]
Description: efflux ABC transporter permease ATP-binding protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.6e-34  119.4   0.0    2.7e-34  118.6   0.0    1.4  1  ABC_tran      ABC transporter
      3e-32  112.4   8.6    3.8e-32  112.0   8.6    1.1  1  ABC_membrane  ABC transporter transmembrane region
    4.5e-05   23.0   5.5    0.00022   20.7   0.1    2.9  3  SMC_N         RecF/RecN/SMC N terminal domain
      5e-05   23.8   1.9    0.00043   20.7   0.7    2.4  2  AAA_16        AAA ATPase domain
    0.00044   20.5   0.4     0.0067   16.7   0.1    2.8  2  AAA_22        AAA domain
    0.00052   19.4   0.0     0.0011   18.2   0.0    1.5  1  Zeta_toxin    Zeta toxin
     0.0018   17.2   0.0     0.0084   15.0   0.1    1.9  2  ABC_ATPase    Predicted ATPase of the ABC class
     0.0038   17.1   0.0     0.0086   16.0   0.0    1.6  1  APS_kinase    Adenylylsulphate kinase
  ------ inclusion threshold ------
      0.033   13.9   0.0      0.083   12.7   0.0    1.6  1  AAA_29        P-loop containing region of AAA domain
      0.035   13.8   0.8       0.18   11.5   0.0    2.5  3  AAA_30        AAA domain
       0.06   13.2   0.0       0.21   11.4   0.0    2.0  1  CPT           Chloramphenicol phosphotransferase-like protein
       0.12   12.3   0.1        1.1    9.3   0.0    2.5  3  AAA_5         AAA domain (dynein-related subfamily)
       0.13   12.0   0.0       0.49   10.1   0.0    1.8  2  AAA_21        AAA domain, putative AbiEii toxin, Type IV TA s
       0.16   12.5   0.0       0.33   11.5   0.0    1.6  1  AAA_18        AAA domain
       0.21   11.8   0.7        1.4    9.2   0.7    2.3  1  SbcCD_C       Putative exonuclease SbcCD, C subunit
       0.24   10.5   0.0       0.37    9.9   0.0    1.2  1  G-alpha       G-protein alpha subunit
       0.33   10.6   0.0       0.46   10.1   0.0    1.1  1  AAA_15        AAA ATPase domain


Domain annotation for each model (and alignments):
>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  118.6   0.0   2.6e-37   2.7e-34       1     137 []     341     490 ..     341     490 .. 0.89

  Alignments for each domain:
  == domain 1  score: 118.6 bits;  conditional E-value: 2.6e-37
                 EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGGB-HHHCCHCEEEE-SS--S-TTSBHHHH.......HHHTCHHHHHHHS CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.......xxxxxxxxxxxxx RF
    ABC_tran   1 lknvslklkegekvaivGenGaGKStLlkllagllkpteGeilldgkdlkeqeleslrkeigvlpqepqlfpeltvren.......esdeeiekalskl 92 
                 l+ vsl+  +g++va+vG +GaGKSt+++l+ + ++pt+G +lldg d++e el++lr++ig+++qep+lf+++ ++en       ++d+++++a++  
  KOO20828.1 341 LDSVSLEAPPGSIVALVGASGAGKSTIARLIERFYDPTSGALLLDGVDFRELELRWLRRQIGFVEQEPTLFDRS-IAENvrygapeADDAQVQRAIELA 438
                 789***********************************************************************.99999*****96666655555555 PP

                 TTGG.......TTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTTT CS
                 xxxx.......xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  93 glke.......lkdtvvksspssLSgGqkqrvalarallkkpkllllDEpta 137
                 +  e         +t+ ++++  LSgGqkqr+a+ara+lk+p llllDE+t+
  KOO20828.1 439 NAAEfiselpeGLETNPGERGVRLSGGQKQRIAIARAVLKQPALLLLDEATS 490
                 555555555555677778888*****************************96 PP

>> ABC_membrane  ABC transporter transmembrane region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  112.0   8.6   3.6e-35   3.8e-32       5     270 ..       1     273 [.       1     277 [. 0.97

  Alignments for each domain:
  == domain 1  score: 112.0 bits;  conditional E-value: 3.6e-35
                   HHHHHHHHHHHHHHHHHHHHHHHHHHSSTCCHH........HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSTHHHHH CS
  ABC_membrane   5 illailagvlsplfplvlgrildtlldkgdpet........ealnvysllllllglaqfilallqsyllnvtgerlskrlrrklfkkilrqpmsffd 93 
                   ++++++ + +s++ p+v g+++d  +d   + +        ++++ ++ +l +l+ ++++++++   l+ v++  + +rlr  +f ++ +q+++f+d
    KOO20828.1   1 MVCSVVLTSTSFAAPYVQGKLFDAAVDA-YHAKkrvdeafaQDVAPLLAILGGLYGLSWVMEIFVGILFAVAAHTALTRLRCAMFANLVQQDVAFYD 96 
                   589***********************96.33334677999********************************************************* PP

                   HSCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTH CS
  ABC_membrane  94 tnsvGellsrltndvsklrdglgeklglffqslltfvgglivmfylgwkltlvllailpliilvsaviakilkklkkkeqkavakassvaeEslsgi 190
                    + +Gel+srl nd  +l++++++   +++ + + ++gg++ m ++ + l l+ +ai+p++ l++   + +   +   ++ ++aka+s a+E+l  +
    KOO20828.1  97 AHVSGELSSRLINDSVQLQTLVQFVTQDVLKAAVRIIGGVLAMYLTHPLLGLLATAITPINWLIIRKAGTVQGLYGAVQNASIAKANSAAIEALGCM 193
                   ************************************************************************************************* PP

                   HHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSTHHHHHHHHHHHHHH CS
  ABC_membrane 191 rtVkafgreeyflekfekaleeakkagikkaianglligitqllgllsyalalwfGttlvisgelsvgdlvvflslfail 270
                   rtV+a ++e ++ ++f   ++++++  +   +++ ++i ++ ll+ l  +l+l +G+++vi+ge+++g++++f+++  ++
    KOO20828.1 194 RTVHANTGELREARRFASHIRRFLRVVLVTVHSQTVVIFTQLLLSQLRDVLVLGVGMHQVIAGEITIGNFTAFTQYVGLF 273
                   ***************************************************************************99866 PP

>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.3   0.3      0.37   3.9e+02     146     210 ..      69     134 ..      66     139 .. 0.76
   2 ?    2.6   0.1     0.072        76      25      41 ..     352     368 ..     342     375 .. 0.83
   3 !   20.7   0.1   2.1e-07   0.00022     136     209 ..     461     530 ..     379     540 .. 0.80

  Alignments for each domain:
  == domain 1  score: 0.3 bits;  conditional E-value: 0.37
                 HHHHHHHHHCCS--SEEEECTTTTT.S-HHHHHHHHHHHHHHCTTSEEEEE-SSHHHCCC-SCEEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N 146 alaLlfAiqkvkpaplyllDeidaa.LDeknvkkvaellkeksknaQfivislreemlekadklvg 210
                 a+a   A+ + + a +  l   d a  D++   +++++l ++s + Q +v  +++++l+ a +++g
  KOO20828.1  69 AVAAHTALTRLRCAMFANLVQQDVAfYDAHVSGELSSRLINDSVQLQTLVQFVTQDVLKAAVRIIG 134
                 555556666666666666666665415777778999999999*9***************9998886 PP

  == domain 2  score: 2.6 bits;  conditional E-value: 0.072
                 SEEEEEESTTSSHHHHH CS
                 xxxxxxxxxxxxxxxxx RF
       SMC_N  25 sftaivGpNGSGKsnll 41 
                 s+ a+vG+ G+GKs + 
  KOO20828.1 352 SIVALVGASGAGKSTIA 368
                 5789**********996 PP

  == domain 3  score: 20.7 bits;  conditional E-value: 2.1e-07
                 CS-HHHHHHHHHHHHHHHHCCS--SEEEECTTTTTS-HHHHHHHHHHHHHHCTTSEEEEE-SSHHHCCC-SCEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N 136 lLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvkkvaellkeksknaQfivislreemlekadklv 209
                  LSgG+k+ +a+a        k+ +l llDe  +aLD +n ++v   l++   +   +vi++r  ++ +a +++
  KOO20828.1 461 RLSGGQKQRIAIAR----AVLKQPALLLLDEATSALDSANEAAVTLALDQLMLERTTVVIAHRLSTVVRATQIL 530
                 79*****9888764....4577889**************************************99999998776 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.5   0.0      0.34   3.5e+02     101     140 ..     189     231 ..     114     235 .. 0.67
   2 !   20.7   0.7   4.1e-07   0.00043      19     157 ..     344     506 ..     336     520 .. 0.49

  Alignments for each domain:
  == domain 1  score: 1.5 bits;  conditional E-value: 0.34
      AAA_16 101 leeala...avpelagaea..srllellkrll.allsrderplvlv 140
                  +   +    v + +g+++  +r++ +++r+l + l + ++++v++
  KOO20828.1 189 AL---GcmrTVHANTGELReaRRFASHIRRFLrVVLVTVHSQTVVI 231
                 22...2333444444444466***********86666655555554 PP

  == domain 2  score: 20.7 bits;  conditional E-value: 4.1e-07
      AAA_16  19 vrsgrp..elvllsGesGvGKsslvrellralekd.ggiflrgkcdqlesaipy.....sa.laqalareellrqlldeaesaeleawrekleeala.. 106
                 v+   p  ++v l+G+sG GKs+++r + r +  + g  +l  + +++ +++++     ++ ++++  +  + r ++++ +  ++ea++++ ++a++  
  KOO20828.1 344 VSLEAPpgSIVALVGASGAGKSTIARLIERFYDPTsG--ALLLDGVDF-RELELrwlrrQIgFVEQEPT-LFDRSIAENVRYGAPEADDAQVQRAIEla 438
                 555555569********************98888842..333333333.22233222224445555522.33333333333334444444444444444 PP

      AAA_16 107 ...................avpelagaeasrllellkrll..allsrderplvlvlDdlq....wadeaslql.laa 157
                                     +         rl    k+ +  a++   ++p +l+lD++      a ea  +l l++
  KOO20828.1 439 naaefiselpegletnpgeRG--------VRLSGGQKQRIaiARAVL-KQPALLLLDEATsaldSANEAAVTLaLDQ 506
                 445555555444433332222........233322222221222222.55788888866531114444444444444 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.0       3.5   3.6e+03      39      77 ..     192     227 ..     174     246 .. 0.61
   2 !   16.7   0.1   6.3e-06    0.0067       6     104 ..     352     493 ..     349     524 .. 0.66

  Alignments for each domain:
  == domain 1  score: -1.9 bits;  conditional E-value: 3.5
      AAA_22  39 rpevvfvtlpsstsskdllrellralglelkaerlssee 77 
                 + ++v+ +  ++ + + +++++ r+l + l +     ++
  KOO20828.1 192 CMRTVHANTGELREARRFASHIRRFLRVVLVT---VHSQ 227
                 66777777777778888888888888777777...2222 PP

  == domain 2  score: 16.7 bits;  conditional E-value: 6.3e-06
      AAA_22   6 gilvvtGesGtGKTtllrrlleqldeeakaee......................................erpevvfvtlpsstsskdllrellralgl 66 
                 +i++++G sG+GK+t +r + + +d  + a                                                       ++    ++ ra++l
  KOO20828.1 352 SIVALVGASGAGKSTIARLIERFYDPTSGALLldgvdfrelelrwlrrqigfveqeptlfdrsiaenvryG-------------APEADDAQVQRAIEL 437
                 7899*******************986555544888888888888888888888533333333333222220.............444444555555554 PP

      AAA_22  67 elka.............erlsseell.ealeqalrarav...ielliiDEaqh.lr 104
                  + a             ++ +  +l   + ++ + arav   ++ll++DEa   l+
  KOO20828.1 438 ANAAefiselpegletnPGERGVRLSgGQKQRIAIARAVlkqPALLLLDEATSaLD 493
                 44446666666666666555777777788888888887788888999999988776 PP

>> Zeta_toxin  Zeta toxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.2   0.0   1.1e-06    0.0011      18      57 ..     353     392 ..     345     395 .. 0.94

  Alignments for each domain:
  == domain 1  score: 18.2 bits;  conditional E-value: 1.1e-06
  Zeta_toxin  18 lillgGqpGAGKselaellkdelerqgnvvrldpDdlRel 57 
                 ++ l+G++GAGKs++a+l+++  +++++++ ld+ d+Rel
  KOO20828.1 353 IVALVGASGAGKSTIARLIERFYDPTSGALLLDGVDFREL 392
                 6789**********************************96 PP

>> ABC_ATPase  Predicted ATPase of the ABC class
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.0      0.55   5.8e+02     243     266 ..     349     373 ..     326     379 .. 0.85
   2 !   15.0   0.1     8e-06    0.0084     293     352 ..     431     491 ..     424     500 .. 0.91

  Alignments for each domain:
  == domain 1  score: -1.0 bits;  conditional E-value: 0.55
                 -SS.EEEEEE-TTSSHHHHHHHHHH CS
  ABC_ATPase 243 pkG.vtlIvGggfhGKsTLLeAlek 266
                 p G ++++vG    GKsT+ + +e+
  KOO20828.1 349 PPGsIVALVGASGAGKSTIARLIER 373
                 5566999***********9998876 PP

  == domain 2  score: 15.0 bits;  conditional E-value: 8e-06
                 TT--EEEE--TTTB---CCC--ST.TEEESS--HHHHHHHHHHHHHHTT-SEEEEEGGGS- CS
  ABC_ATPase 293 dgrsvkgvDispFinnLPegkdtt.kfstedASGStsqAanimealeagakllLiDEDtsA 352
                   r+++ ++   Fi++LPeg +t+        SG   q  +i++a+  +  llL+DE tsA
  KOO20828.1 431 VQRAIELANAAEFISELPEGLETNpGERGVRLSGGQKQRIAIARAVLKQPALLLLDEATSA 491
                 5699999*****************65666789****************************9 PP

>> APS_kinase  Adenylylsulphate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.0   8.1e-06    0.0086       2      64 ..     351     416 ..     350     422 .. 0.77

  Alignments for each domain:
  == domain 1  score: 16.0 bits;  conditional E-value: 8.1e-06
                 -EEEEEESSTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHTT....TTTTT--SSHHHHHHHHHHHH CS
  APS_kinase   2 gvvvwltGlsgsGKstianalekkLvekgisvylLdGdnvRh....gLnkdLgfseedRkenirrva 64 
                 g +v l G sg+GKstia+ +e+   +    + lLdG   R+     L +++gf e++ +   r +a
  KOO20828.1 351 GSIVALVGASGAGKSTIARLIER-FYDPTSGALLLDGVDFRElelrWLRRQIGFVEQEPTLFDRSIA 416
                 67899**************9995.6777888999***999963222477888888877666555555 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   7.8e-05     0.083      19      38 ..     348     367 ..     340     368 .. 0.79

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 7.8e-05
      AAA_29  19 idlkgatlltGpsGsGKSTl 38 
                   + +++ l+G+sG+GKST+
  KOO20828.1 348 APPGSIVALVGASGAGKSTI 367
                 55555899***********8 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.0       5.5   5.8e+03     132     159 ..     188     211 ..     182     220 .. 0.67
   2 ?   11.5   0.0   0.00017      0.18      19     100 ..     352     491 ..     346     516 .. 0.76
   3 ?   -0.8   0.1         1   1.1e+03      70     109 ..     517     563 ..     487     565 .. 0.58

  Alignments for each domain:
  == domain 1  score: -3.2 bits;  conditional E-value: 5.5
      AAA_30 132 eaGgvlrdlveaagigtaeLtevvRqke 159
                 ea g +r++    +++t eL+e +R+++
  KOO20828.1 188 EALGCMRTV----HANTGELREARRFAS 211
                 554555555....567889999999964 PP

  == domain 2  score: 11.5 bits;  conditional E-value: 0.00017
      AAA_30  19 rvavltGpAGtGKttalkalreaweaa.g....................................grviglAptgkaAkvLae.elgieastiakllkr 79 
                  +++l+G+ G+GK+t+ + +++ ++   g                                    ++v   Ap++  A+v ++ el  +a+ i +l + 
  KOO20828.1 352 SIVALVGASGAGKSTIARLIERFYDPTsGallldgvdfrelelrwlrrqigfveqeptlfdrsiaENVRYGAPEADDAQVQRAiELANAAEFISELPEG 450
                 57899*****************99988668999999999999999998888888888888888888888888888888875522344455555555555 PP

      AAA_30  80 lk....................grarlepgtllivDEagmv 100
                 l+                    +ra l++  ll+ DEa  +
  KOO20828.1 451 LEtnpgergvrlsggqkqriaiARAVLKQPALLLLDEATSA 491
                 55888888888888888888886677777788888888765 PP

  == domain 3  score: -0.8 bits;  conditional E-value: 1
      AAA_30  70 astiakllkrlk.......grarlepgtllivDEagmvdtkqlaall 109
                 a+++  ++++++         ++  ++t l+ DE +  +t + a+l+
  KOO20828.1 517 AHRLSTVVRATQilvlsrgVVVERGTHTQLVADERSHYATFMKAQLV 563
                 33333333333355677663345566688888999988888888776 PP

>> CPT  Chloramphenicol phosphotransferase-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0    0.0002      0.21       1      27 [.     351     377 ..     351     413 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.0002
                 --EEEEEE-TTSSHHHHHHHHHHHSSS CS
         CPT   1 ariilLnGgsssGKsslaralqevlde 27 
                 ++i+ L G+s +GKs++ar +    d 
  KOO20828.1 351 GSIVALVGASGAGKSTIARLIERFYDP 377
                 679****************99987765 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.0         2   2.1e+03      18      50 ..     102     135 ..      98     140 .. 0.79
   2 ?    9.3   0.0     0.001       1.1       2      23 ..     354     375 ..     353     401 .. 0.86
   3 ?   -2.3   0.0       3.9   4.1e+03      65      88 ..     479     502 ..     458     533 .. 0.66

  Alignments for each domain:
  == domain 1  score: -1.4 bits;  conditional E-value: 2
                 HGGGGB.S--EEEEE--TT--HHHHH--B--... CS
       AAA_5  18 rlaaal.nreveyvqltrdtteedlkgrreikng 50 
                 +l+++l n++v+   l ++ t++ lk  ++i +g
  KOO20828.1 102 ELSSRLiNDSVQLQTLVQFVTQDVLKAAVRIIGG 135
                 5666666999999999999999999999888655 PP

  == domain 2  score: 9.3 bits;  conditional E-value: 0.001
                 EEEE--SSSSHHHHHHHGGGGB CS
       AAA_5   2 vlLvGppGtgKselaerlaaal 23 
                 v LvG++G gKs++a+ + +++
  KOO20828.1 354 VALVGASGAGKSTIARLIERFY 375
                 679**************99987 PP

  == domain 3  score: -2.3 bits;  conditional E-value: 3.9
                 G-SEEEEESGGG--HHHHHHHHHH CS
       AAA_5  65 egeilvlDEveraesevlnsLlsl 88 
                 ++++l+lDE + a +++ ++  +l
  KOO20828.1 479 QPALLLLDEATSALDSANEAAVTL 502
                 677788888877766655544444 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.0   0.00047      0.49       1      25 [.     353     377 ..     353     415 .. 0.75
   2 ?   -0.9   0.0       1.1   1.1e+03     237     271 ..     462     493 ..     432     531 .. 0.81

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.00047
      AAA_21   1 lnvliGpNgsGKSnLLdaldllarl 25 
                 + +l+G+ g+GKS++ ++++ + + 
  KOO20828.1 353 IVALVGASGAGKSTIARLIERFYDP 377
                 579****************988654 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 1.1
      AAA_21 237 lSdGtkrllalltallralkkgsllliDEpEngLH 271
                 lS G+k+ +a++ a+l ++   +lll+DE  + L+
  KOO20828.1 462 LSGGQKQRIAIARAVLKQP---ALLLLDEATSALD 493
                 5778888877777777777...9*****9777666 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   0.00031      0.33       1      20 [.     354     373 ..     354     440 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.00031
      AAA_18   1 IlltGtpGvGKttlakeLsk 20 
                 ++l G++G+GK+t+a+ +++
  KOO20828.1 354 VALVGASGAGKSTIARLIER 373
                 6899************9954 PP

>> SbcCD_C  Putative exonuclease SbcCD, C subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.2   0.7    0.0014       1.4      62      85 ..     478     501 ..     446     506 .. 0.78

  Alignments for each domain:
  == domain 1  score: 9.2 bits;  conditional E-value: 0.0014
     SbcCD_C  62 palrlvfLDEAFsklDeesiatll 85 
                 ++++l++LDEA s lD+ + a++ 
  KOO20828.1 478 KQPALLLLDEATSALDSANEAAVT 501
                 4689*************9988765 PP

>> G-alpha  G-protein alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   0.0   0.00035      0.37      26      51 ..     354     389 ..     346     404 .. 0.79

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.00035
                 EEEEESTTSSHHHHHHHHHHHCS--..........- CS
     G-alpha  26 llllGqseSGKsTilkqlkllykkg..........f 51 
                 + l+G+s+ GKsTi + ++++y+++          f
  KOO20828.1 354 VALVGASGAGKSTIARLIERFYDPTsgallldgvdF 389
                 579*******************99855555555444 PP

>> AAA_15  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.0   0.00043      0.46      25      50 ..     353     378 ..     341     418 .. 0.86

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.00043
      AAA_15  25 ltvliGkNnsGKSsilealdlFlnnk 50 
                 +  l+G+ ++GKS+i+++++ F + +
  KOO20828.1 353 IVALVGASGAGKSTIARLIERFYDPT 378
                 789*******************8865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (582 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       613  (0.0341904); expected 358.6 (0.02)
Passed bias filter:                      429  (0.0239277); expected 358.6 (0.02)
Passed Vit filter:                        74  (0.00412739); expected 17.9 (0.001)
Passed Fwd filter:                        17  (0.000948185); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              17  [number of targets reported over threshold]
# CPU time: 0.63u 0.30s 00:00:00.93 Elapsed: 00:00:00.46
# Mc/sec: 3819.85
//
Query:       KOO20829.1  [L=675]
Description: hypothetical protein Ctob_000012 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.13   12.3   0.1       0.26   11.3   0.1    1.4  1  HOIP-UBA  HOIP UBA domain pair


Domain annotation for each model (and alignments):
>> HOIP-UBA  HOIP UBA domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.1   1.4e-05      0.26     102     137 ..       6      41 ..       4      44 .. 0.93

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 1.4e-05
    HOIP-UBA 102 kKvkelaslgffdreevveaLrqsgGdvegAlveLq 137
                 k+++el++l  ++ +++ eaL+++  d+++Al  L+
  KOO20829.1   6 KQIQELQALSGRNLKDCKEALNNHDCDIKAALHALN 41 
                 5799*****************************998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (675 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       542  (0.0302304); expected 358.6 (0.02)
Passed bias filter:                      357  (0.0199119); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.54u 0.26s 00:00:00.80 Elapsed: 00:00:00.41
# Mc/sec: 4894.20
//
Query:       KOO20830.1  [L=876]
Description: protein of unknown function duf218 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.6e-37  126.2  66.9    8.4e-10   38.8   1.4    8.4  9  TPR_12     Tetratricopeptide repeat
    1.3e-31  107.5  46.1    4.4e-06   26.4   1.9    9.2  9  TPR_10     Tetratricopeptide repeat
    3.6e-14   52.9   0.0    1.6e-13   50.8   0.0    2.1  1  DUF218     DUF218 domain
    4.5e-08   33.6  39.1      0.062   14.0   7.7    7.4  6  TPR_16     Tetratricopeptide repeat
      7e-05   22.9   7.5    0.00022   21.3   7.5    1.9  1  RINGv      RING-variant domain
     0.0001   22.1  15.6       0.99    9.6   0.1    5.9  6  TPR_7      Tetratricopeptide repeat
     0.0027   18.0   3.7        9.1    6.9   0.1    5.4  6  TPR_17     Tetratricopeptide repeat
  ------ inclusion threshold ------
       0.01   15.7  11.7         11    6.1   0.6    5.5  5  TPR_1      Tetratricopeptide repeat
       0.18   12.0  20.3        4.9    7.5   0.5    6.1  5  TPR_2      Tetratricopeptide repeat
       0.92   10.3  11.7          8    7.3   0.4    4.6  4  TPR_6      Tetratricopeptide repeat
       0.93   10.5  31.4        2.2    9.3   1.4    6.4  6  TPR_14     Tetratricopeptide repeat
        1.9    8.9   5.2          5    7.5   5.2    1.8  1  zf-RING_2  Ring finger domain


Domain annotation for each model (and alignments):
>> TPR_12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.0   2.6   9.9e-08   0.00015       5      68 ..     154     217 ..     150     217 .. 0.93
   2 !   35.2   7.1   7.4e-12   1.1e-08       6      74 ..     197     265 ..     192     268 .. 0.92
   3 !   35.6   8.4   5.8e-12   8.7e-09       3      69 ..     237     302 ..     234     309 .. 0.92
   4 !   38.8   1.4   5.6e-13   8.4e-10       4      64 ..     280     339 ..     277     345 .. 0.94
   5 !   16.6   0.1   4.6e-06    0.0069       3      51 ..     320     368 ..     318     368 .. 0.91
   6 !   30.0   2.9   3.2e-10   4.8e-07      18      73 ..     380     435 ..     376     437 .. 0.94
   7 !   25.3   0.3   9.3e-09   1.4e-05       4      55 ..     408     459 ..     406     466 .. 0.89
   8 !   15.0   0.1   1.5e-05     0.023      25      66 ..     519     560 ..     516     561 .. 0.86
   9 ?    5.0   0.0      0.02        30      20      56 ..     559     595 ..     556     598 .. 0.91

  Alignments for each domain:
  == domain 1  score: 22.0 bits;  conditional E-value: 9.9e-08
      TPR_12   5 alnnlaavlrrlgrydeAlellekaleiarrllGpdhpltattlrnLgrlyralgryeeAlell 68 
                 a + l a+l++   y+eA++  ++ le+a  ++Gp+h  t+ ++ nLg l++a+g+++ A+ l+
  KOO20830.1 154 ARVSLSAALAACSLYAEAETVVRANLEAAAMVHGPEHRHTLGARMNLGVLLEAQGQTATAETLY 217
                 5567889999999************************************************987 PP

  == domain 2  score: 35.2 bits;  conditional E-value: 7.4e-12
      TPR_12   6 lnnlaavlrrlgrydeAlellekaleiarrllGpdhpltattlrnLgrlyralgryeeAlelleealai 74 
                   nl+++l ++g+ + A++l+ + l+ +rr+lG++h++t++t   L+ + + +gr++eA++ ++  la+
  KOO20830.1 197 RMNLGVLLEAQGQTATAETLYVALLDDQRRVLGHEHHDTLATAMQLAGAALTQGRHAEAEAQYRPILAA 265
                 569************************************************************966666 PP

  == domain 3  score: 35.6 bits;  conditional E-value: 5.8e-12
      TPR_12   3 atalnnlaavlrrlgrydeAlellekaleiarrllGpdhpltattlrnLgrlyralgryeeAlelle 69 
                 ata+ +la + + +gr++eA++ ++  l++++rllG+ hp ++++  nLg +++ + +++eA++l++
  KOO20830.1 237 ATAM-QLAGAALTQGRHAEAEAQYRPILAARTRLLGEAHPSVLICAMNLGSALLHQAKLREAEALYR 302
                 4555.9************************************************************8 PP

  == domain 4  score: 38.8 bits;  conditional E-value: 5.6e-13
      TPR_12   4 talnnlaavlrrlgrydeAlellekaleiarrllGpdhpltattlrnLgrlyralgryeeA 64 
                 +a+ nl+++l+++ ++ eA++l+++ le  rr lGp+hp+t+ +  nLg ++ ++g+y+ A
  KOO20830.1 280 CAM-NLGSALLHQAKLREAEALYRANLEHKRRRLGPEHPDTLMAAMNLGVTLKERGDYANA 339
                 677.9*****************************************************988 PP

  == domain 5  score: 16.6 bits;  conditional E-value: 4.6e-06
      TPR_12   3 atalnnlaavlrrlgrydeAlellekaleiarrllGpdhpltattlrnL 51 
                 + a+ nl+++l ++g+y+ A+ ll + + +  r+lG+ h +t+ +  nL
  KOO20830.1 320 LMAAMNLGVTLKERGDYANACPLLAENYGVKARVLGTAHVDTCFAALNL 368
                 455669************************************9999887 PP

  == domain 6  score: 30.0 bits;  conditional E-value: 3.2e-10
      TPR_12  18 rydeAlellekaleiarrllGpdhpltattlrnLgrlyralgryeeAlelleeala 73 
                 ry+eA++l  + +++ ++++Gp+hp  ++++  L+++++a+g+++ A el+  a +
  KOO20830.1 380 RYEEAEALATRTRAALESSFGPEHPSCLSAQVHLAMALEARGDHARAAELYGLAHE 435
                 9*************************************************976665 PP

  == domain 7  score: 25.3 bits;  conditional E-value: 9.3e-09
      TPR_12   4 talnnlaavlrrlgrydeAlellekaleiarrllGpdhpltattlrnLgrly 55 
                 +a+++la++l ++g+++ A el+  a+e++ r++Gp+hp+t+++    + l 
  KOO20830.1 408 SAQVHLAMALEARGDHARAAELYGLAHEVRIRVQGPEHPDTLEVAWRRAVLM 459
                 68899*************************************9988877765 PP

  == domain 8  score: 15.0 bits;  conditional E-value: 1.5e-05
      TPR_12  25 llekaleiarrllGpdhpltattlrnLgrlyralgryeeAle 66 
                 ll++   +++++lG +hp t++tl  Lg+++ a g ++ A e
  KOO20830.1 519 LLRATATAQTKALGAEHPRTLRTLVSLGEVLVANGGPKLAAE 560
                 566667777999***********************9999976 PP

  == domain 9  score: 5.0 bits;  conditional E-value: 0.02
      TPR_12  20 deAlellekaleiarrllGpdhpltattlrnLgrlyr 56 
                 +eA +l  ++ ++++++l+p+hp++  t+  Lgr+ r
  KOO20830.1 559 AEATTLWTRCEAAQSAVLDPTHPELMYTRELLGRVAR 595
                 799999999*9999********************975 PP

>> TPR_10  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.1   0.7      0.12   1.9e+02       7      41 ..     157     191 ..     153     192 .. 0.90
   2 !   24.0   0.8   1.7e-08   2.5e-05       1      42 []     193     234 ..     193     234 .. 0.97
   3 !   26.4   1.9   2.9e-09   4.4e-06       1      41 [.     235     275 ..     235     276 .. 0.97
   4 !   24.6   0.7     1e-08   1.6e-05       3      42 .]     279     318 ..     277     318 .. 0.96
   5 !   22.6   0.1   4.6e-08   6.9e-05       1      42 []     319     360 ..     319     360 .. 0.97
   6 !   10.8   0.1   0.00024      0.36      17      41 ..     380     404 ..     376     405 .. 0.94
   7 !   22.2   0.7   6.2e-08   9.2e-05       2      42 .]     407     447 ..     406     447 .. 0.97
   8 ?    3.1   0.1     0.063        93      21      41 ..     516     536 ..     515     537 .. 0.89
   9 ?   -3.0   0.1         5   7.5e+03      20      32 ..     695     707 ..     694     707 .. 0.82

  Alignments for each domain:
  == domain 1  score: 2.1 bits;  conditional E-value: 0.12
      TPR_10   7 NLanalrqrgrydeAealleealairrrllGpdHP 41 
                  L++al +   y+eAe   +  l++   ++Gp+H+
  KOO20830.1 157 SLSAALAACSLYAEAETVVRANLEAAAMVHGPEHR 191
                 68999999999***********************7 PP

  == domain 2  score: 24.0 bits;  conditional E-value: 1.7e-08
      TPR_10   1 tAsslnNLanalrqrgrydeAealleealairrrllGpdHPd 42 
                 t+ ++ NL+++l ++g+ + Ae l+   l+ +rr+lG++H d
  KOO20830.1 193 TLGARMNLGVLLEAQGQTATAETLYVALLDDQRRVLGHEHHD 234
                 7899************************************87 PP

  == domain 3  score: 26.4 bits;  conditional E-value: 2.9e-09
      TPR_10   1 tAsslnNLanalrqrgrydeAealleealairrrllGpdHP 41 
                 t+++   La a   +gr++eAea ++  la+r rllG+ HP
  KOO20830.1 235 TLATAMQLAGAALTQGRHAEAEAQYRPILAARTRLLGEAHP 275
                 89999***********************************9 PP

  == domain 4  score: 24.6 bits;  conditional E-value: 1e-08
      TPR_10   3 sslnNLanalrqrgrydeAealleealairrrllGpdHPd 42 
                  +  NL+ al ++ ++ eAeal++  l+  rr lGp+HPd
  KOO20830.1 279 ICAMNLGSALLHQAKLREAEALYRANLEHKRRRLGPEHPD 318
                 6899***********************************9 PP

  == domain 5  score: 22.6 bits;  conditional E-value: 4.6e-08
      TPR_10   1 tAsslnNLanalrqrgrydeAealleealairrrllGpdHPd 42 
                 t+++  NL+++l +rg+y+ A  ll e + +  r+lG+ H d
  KOO20830.1 319 TLMAAMNLGVTLKERGDYANACPLLAENYGVKARVLGTAHVD 360
                 89**************************************76 PP

  == domain 6  score: 10.8 bits;  conditional E-value: 0.00024
      TPR_10  17 rydeAealleealairrrllGpdHP 41 
                 ry+eAeal+ ++ a+ +  +Gp+HP
  KOO20830.1 380 RYEEAEALATRTRAALESSFGPEHP 404
                 9***********************9 PP

  == domain 7  score: 22.2 bits;  conditional E-value: 6.2e-08
      TPR_10   2 AsslnNLanalrqrgrydeAealleealairrrllGpdHPd 42 
                 +s++ +La+al +rg++++A +l+  a ++r r+ Gp+HPd
  KOO20830.1 407 LSAQVHLAMALEARGDHARAAELYGLAHEVRIRVQGPEHPD 447
                 68999***********************************9 PP

  == domain 8  score: 3.1 bits;  conditional E-value: 0.063
      TPR_10  21 AealleealairrrllGpdHP 41 
                 A+ ll+ +  ++ ++lG++HP
  KOO20830.1 516 ALLLLRATATAQTKALGAEHP 536
                 67789999999*********9 PP

  == domain 9  score: -3.0 bits;  conditional E-value: 5
      TPR_10  20 eAealleealair 32 
                 eA+ +++ea++++
  KOO20830.1 695 EAVIFAREAVERC 707
                 8999999999875 PP

>> DUF218  DUF218 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.8   0.0   1.1e-16   1.6e-13      12     105 ..     653     764 ..     645     806 .. 0.82

  Alignments for each domain:
  == domain 1  score: 50.8 bits;  conditional E-value: 1.1e-16
      DUF218  12 llaeRldeaaelyrag..kiivsGg............gadedvseaeamaeylre.lgvpeeailledrsrnTeenarfskell.....kersillVTs 90 
                 ++ + +++aael+++    + ++Gg            g    ++ea ++a+ ++e  gvp++++l+e  +rnT en+  s++ll       ++++lV +
  KOO20830.1 653 SDLRVARHAAELHKKLggWLCFTGGmgtgphsganllG--WAEPEAVIFAREAVErCGVPKDEVLVEADARNTGENVSLSRALLashglACERVVLVQK 749
                 45668899*****999777********99998766442..678999999999999899**99**************************85459****** PP

      DUF218  91 afHmpRalllfrkag 105
                 +f+ +R+ ++++++ 
  KOO20830.1 750 PFMERRTWATVKRVW 764
                 *************93 PP

>> TPR_16  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   1.8       1.6   2.4e+03      33      61 ..     151     179 ..     146     184 .. 0.82
   2 !    8.4   0.4    0.0023       3.4      28      61 ..     188     221 ..     176     225 .. 0.82
   3 !   14.0   7.7   4.2e-05     0.062       2      59 ..     241     303 ..     240     309 .. 0.88
   4 !   12.2   0.0   0.00015      0.23      25      54 ..     311     340 ..     307     347 .. 0.89
   5 !   12.5   5.1   0.00012      0.18      12      57 ..     380     430 ..     377     446 .. 0.83
   6 ?   -0.6   0.1       1.5   2.2e+03      27      57 ..     532     562 ..     523     573 .. 0.81

  Alignments for each domain:
  == domain 1  score: -0.7 bits;  conditional E-value: 1.6
      TPR_16  33 aaeAllllgdaalrqgrlaeAaalyraal 61 
                 + +A+  l  a+++ + +aeA+ ++ra l
  KOO20830.1 151 RFAARVSLSAALAACSLYAEAETVVRANL 179
                 67899999999999999****99999855 PP

  == domain 2  score: 8.4 bits;  conditional E-value: 0.0023
      TPR_16  28 pssPdaaeAllllgdaalrqgrlaeAaalyraal 61 
                 p++  +  A+++lg+++ +qg  a A+ ly a+l
  KOO20830.1 188 PEHRHTLGARMNLGVLLEAQGQTATAETLYVALL 221
                 555567779******************8887776 PP

  == domain 3  score: 14.0 bits;  conditional E-value: 4.2e-05
      TPR_16   2 alaraalragdyddAaaaleaalkrdpssPd.....aaeAllllgdaalrqgrlaeAaalyra 59 
                 +la aal +g+ ++A+a+++  l+++ +            +++lg a+l+q  l eA+alyra
  KOO20830.1 241 QLAGAALTQGRHAEAEAQYRPILAARTRLLGeahpsVLICAMNLGSALLHQAKLREAEALYRA 303
                 69**********************996543355555999**********************98 PP

  == domain 4  score: 12.2 bits;  conditional E-value: 0.00015
      TPR_16  25 krdpssPdaaeAllllgdaalrqgrlaeAa 54 
                 +++p++Pd+  A+++lg+ + ++g++a A 
  KOO20830.1 311 RLGPEHPDTLMAAMNLGVTLKERGDYANAC 340
                 789************************995 PP

  == domain 5  score: 12.5 bits;  conditional E-value: 0.00012
      TPR_16  12 dyddAaaaleaalkr.....dpssPdaaeAllllgdaalrqgrlaeAaaly 57 
                 +y++A+a++++++++     +p++P +  A+ +l+ a+ ++g++a+Aa+ly
  KOO20830.1 380 RYEEAEALATRTRAAlessfGPEHPSCLSAQVHLAMALEARGDHARAAELY 430
                 78889988888888855555688899**********************665 PP

  == domain 6  score: -0.6 bits;  conditional E-value: 1.5
      TPR_16  27 dpssPdaaeAllllgdaalrqgrlaeAaaly 57 
                 ++++P++ + l  lg+++ ++g  ++Aa++ 
  KOO20830.1 532 GAEHPRTLRTLVSLGEVLVANGGPKLAAEAT 562
                 5677888889999999999999999998665 PP

>> RINGv  RING-variant domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.3   7.5   1.5e-07   0.00022       1      38 [.      67     104 ..      67     121 .. 0.82

  Alignments for each domain:
  == domain 1  score: 21.3 bits;  conditional E-value: 1.5e-07
                 ETTTTEE-SSSS--B-SS--STCCCSB-HHHHHHHHHH CS
       RINGv   1 CriCleeeeeseplispCkCrGslklvHesClekWlde 38 
                 C iCle  +e e l + C CrG+ ++vH +C  +   +
  KOO20830.1  67 CYICLEPSAETELLSMGCGCRGTSHMVHSACAVRAAAA 104
                 9******************************8775555 PP

>> TPR_7  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.6   0.1   0.00066      0.99       4      26 ..     199     221 ..     196     229 .. 0.87
   2 ?   -1.6   0.1       2.4   3.6e+03       5      23 ..     242     260 ..     240     271 .. 0.81
   3 !    6.1   0.3    0.0084        12       4      30 ..     283     309 ..     280     315 .. 0.82
   4 !    6.3   0.0    0.0075        11       4      22 ..     325     343 ..     322     356 .. 0.91
   5 ?   -2.4   0.0       4.4   6.5e+03      13      24 ..     379     390 ..     371     400 .. 0.77
   6 !    6.7   0.1    0.0056       8.4       4      24 ..     412     432 ..     411     442 .. 0.88

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 0.00066
       TPR_7   4 nLarlysrlGdyeeAielyeqsL 26 
                 nL++l +++G++++A++ly ++L
  KOO20830.1 199 NLGVLLEAQGQTATAETLYVALL 221
                 9******************9844 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 2.4
       TPR_7   5 LarlysrlGdyeeAielye 23 
                 La +   +G+++eA+  y+
  KOO20830.1 242 LAGAALTQGRHAEAEAQYR 260
                 77777889******99886 PP

  == domain 3  score: 6.1 bits;  conditional E-value: 0.0084
       TPR_7   4 nLarlysrlGdyeeAielyeqsLaltk 30 
                 nL+++   + + +eA+ ly++ L+  +
  KOO20830.1 283 NLGSALLHQAKLREAEALYRANLEHKR 309
                 9*******************9555445 PP

  == domain 4  score: 6.3 bits;  conditional E-value: 0.0075
       TPR_7   4 nLarlysrlGdyeeAiely 22 
                 nL+++  ++Gdy++A  l+
  KOO20830.1 325 NLGVTLKERGDYANACPLL 343
                 9**************9887 PP

  == domain 5  score: -2.4 bits;  conditional E-value: 4.4
       TPR_7  13 GdyeeAielyeq 24 
                  +yeeA+ l ++
  KOO20830.1 379 ARYEEAEALATR 390
                 589999887666 PP

  == domain 6  score: 6.7 bits;  conditional E-value: 0.0056
       TPR_7   4 nLarlysrlGdyeeAielyeq 24 
                  La + +++Gd+++A+ely  
  KOO20830.1 412 HLAMALEARGDHARAAELYGL 432
                 59999**************76 PP

>> TPR_17  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.9   0.1    0.0061       9.1      16      33 ..     197     214 ..     195     215 .. 0.91
   2 ?    0.8   0.0      0.55   8.2e+02      17      33 ..     282     298 ..     272     299 .. 0.86
   3 ?    5.1   0.0     0.024        36      15      32 ..     322     339 ..     316     340 .. 0.88
   4 ?   -0.2   0.1       1.1   1.7e+03      19      32 ..     413     426 ..     410     428 .. 0.90
   5 ?   -3.1   0.0       9.8   1.5e+04      18      32 ..     544     558 ..     541     559 .. 0.82
   6 ?   -1.2   0.0       2.4   3.6e+03       5      18 ..     573     586 ..     570     587 .. 0.82

  Alignments for each domain:
  == domain 1  score: 6.9 bits;  conditional E-value: 0.0061
      TPR_17  16 ynnLAelllknGdlmtAr 33 
                   nL++ll+ +G+++tA+
  KOO20830.1 197 RMNLGVLLEAQGQTATAE 214
                 679*************97 PP

  == domain 2  score: 0.8 bits;  conditional E-value: 0.55
      TPR_17  17 nnLAelllknGdlmtAr 33 
                  nL+ +ll++ +l++A+
  KOO20830.1 282 MNLGSALLHQAKLREAE 298
                 69************998 PP

  == domain 3  score: 5.1 bits;  conditional E-value: 0.024
      TPR_17  15 aynnLAelllknGdlmtA 32 
                 a  nL+++l+++Gd++ A
  KOO20830.1 322 AAMNLGVTLKERGDYANA 339
                 678************977 PP

  == domain 4  score: -0.2 bits;  conditional E-value: 1.1
      TPR_17  19 LAelllknGdlmtA 32 
                 LA +l+ +Gd+++A
  KOO20830.1 413 LAMALEARGDHARA 426
                 99*********998 PP

  == domain 5  score: -3.1 bits;  conditional E-value: 9.8
      TPR_17  18 nLAelllknGdlmtA 32 
                  L+e+l  nG+++ A
  KOO20830.1 544 SLGEVLVANGGPKLA 558
                 799******998766 PP

  == domain 6  score: -1.2 bits;  conditional E-value: 2.4
      TPR_17   5 aleldPnnadaynn 18 
                 ++ ldP+++++++ 
  KOO20830.1 573 SAVLDPTHPELMYT 586
                 5668*******996 PP

>> TPR_1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.0   0.0     0.032        47       4      24 ..     197     217 ..     196     218 .. 0.88
   2 ?    0.4   0.1      0.44   6.6e+02       7      24 ..     242     259 ..     240     260 .. 0.82
   3 ?    6.1   0.6    0.0072        11       5      30 ..     282     307 ..     280     310 .. 0.91
   4 ?    3.6   0.1     0.043        64       5      20 ..     324     339 ..     322     339 .. 0.92
   5 ?    4.2   0.1     0.027        40       6      29 ..     412     435 ..     408     437 .. 0.86

  Alignments for each domain:
  == domain 1  score: 4.0 bits;  conditional E-value: 0.032
                 HHHHHHHHHHTT-HHHHHHHH CS
       TPR_1   4 lynlGnayfklgkydeAleyy 24 
                   nlG+++  +g+   A+  y
  KOO20830.1 197 RMNLGVLLEAQGQTATAETLY 217
                 68***********99998776 PP

  == domain 2  score: 0.4 bits;  conditional E-value: 0.44
                 HHHHHHHTT-HHHHHHHH CS
       TPR_1   7 lGnayfklgkydeAleyy 24 
                 l+ a + +g++ eA++ y
  KOO20830.1 242 LAGAALTQGRHAEAEAQY 259
                 6667889*******9988 PP

  == domain 3  score: 6.1 bits;  conditional E-value: 0.0072
                 HHHHHHHHHTT-HHHHHHHHHHHHHH CS
       TPR_1   5 ynlGnayfklgkydeAleyyekALel 30 
                  nlG a++++ k+ eA++ y+  Le+
  KOO20830.1 282 MNLGSALLHQAKLREAEALYRANLEH 307
                 59******************988886 PP

  == domain 4  score: 3.6 bits;  conditional E-value: 0.043
                 HHHHHHHHHTT-HHHH CS
       TPR_1   5 ynlGnayfklgkydeA 20 
                  nlG+++ + g+y  A
  KOO20830.1 324 MNLGVTLKERGDYANA 339
                 69***********988 PP

  == domain 5  score: 4.2 bits;  conditional E-value: 0.027
                 HHHHHHHHTT-HHHHHHHHHHHHH CS
       TPR_1   6 nlGnayfklgkydeAleyyekALe 29 
                  l++a+   g++  A e y  A e
  KOO20830.1 412 HLAMALEARGDHARAAELYGLAHE 435
                 79*****************87776 PP

>> TPR_2  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.2   0.0     0.039        58       5      28 ..     198     221 ..     195     223 .. 0.88
   2 ?    2.6   0.3      0.12   1.8e+02       6      25 ..     241     260 ..     238     260 .. 0.88
   3 ?    4.5   0.4     0.031        46       5      25 ..     282     302 ..     279     307 .. 0.92
   4 ?    3.6   0.0     0.059        88       4      21 ..     323     340 ..     321     345 .. 0.85
   5 ?    7.5   0.5    0.0033       4.9       5      29 ..     411     435 ..     408     437 .. 0.87

  Alignments for each domain:
  == domain 1  score: 4.2 bits;  conditional E-value: 0.039
       TPR_2   5 ynlGlayyklgdyeeAleafekAl 28 
                 +nlG +++++g+ + A+ ++ + l
  KOO20830.1 198 MNLGVLLEAQGQTATAETLYVALL 221
                 79***************9997766 PP

  == domain 2  score: 2.6 bits;  conditional E-value: 0.12
       TPR_2   6 nlGlayyklgdyeeAleafe 25 
                 +l+ a++ +g+++eA++ ++
  KOO20830.1 241 QLAGAALTQGRHAEAEAQYR 260
                 68889999********9996 PP

  == domain 3  score: 4.5 bits;  conditional E-value: 0.031
       TPR_2   5 ynlGlayyklgdyeeAleafe 25 
                 +nlG a++++ ++ eA+++++
  KOO20830.1 282 MNLGSALLHQAKLREAEALYR 302
                 69*****************98 PP

  == domain 4  score: 3.6 bits;  conditional E-value: 0.059
       TPR_2   4 lynlGlayyklgdyeeAl 21 
                  +nlG  + ++gdy+ A 
  KOO20830.1 323 AMNLGVTLKERGDYANAC 340
                 579************997 PP

  == domain 5  score: 7.5 bits;  conditional E-value: 0.0033
       TPR_2   5 ynlGlayyklgdyeeAleafekAle 29 
                   l++a++++gd+++A+e++  A e
  KOO20830.1 411 VHLAMALEARGDHARAAELYGLAHE 435
                 579*****************87765 PP

>> TPR_6  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.3   0.2     0.011        17       2      28 ..     196     222 ..     196     224 .. 0.89
   2 ?   -1.9   0.3       4.7     7e+03       7      23 ..     285     301 ..     282     303 .. 0.54
   3 ?    1.0   0.0      0.56   8.4e+02       3      23 ..     323     343 ..     322     345 .. 0.83
   4 ?    7.3   0.4    0.0054         8       2      23 ..     409     430 ..     408     434 .. 0.91

  Alignments for each domain:
  == domain 1  score: 6.3 bits;  conditional E-value: 0.011
                 HHHHHHHHHHHHHHHHHHHHHHHHHHH CS
       TPR_6   2 AlyklalsyrklgdtdkAlealerlik 28 
                 A ++l+ +++++g+t++A +++  l++
  KOO20830.1 196 ARMNLGVLLEAQGQTATAETLYVALLD 222
                 7789****************9988776 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 4.7
                 HHHHHHHHHHHHHHHHH CS
       TPR_6   7 alsyrklgdtdkAleal 23 
                 + +++ + + ++A +++
  KOO20830.1 285 GSALLHQAKLREAEALY 301
                 55555544556665555 PP

  == domain 3  score: 1.0 bits;  conditional E-value: 0.56
                 HHHHHHHHHHHHHHHHHHHHH CS
       TPR_6   3 lyklalsyrklgdtdkAleal 23 
                  ++l+  +++ gd+++A+ +l
  KOO20830.1 323 AMNLGVTLKERGDYANACPLL 343
                 5789999***99*****9766 PP

  == domain 4  score: 7.3 bits;  conditional E-value: 0.0054
                 HHHHHHHHHHHHHHHHHHHHHH CS
       TPR_6   2 AlyklalsyrklgdtdkAleal 23 
                 A+ +la+++++ gd+++A e++
  KOO20830.1 409 AQVHLAMALEARGDHARAAELY 430
                 7899*******99*******99 PP

>> TPR_14  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   1.0       7.7   1.1e+04       3      26 ..     154     177 ..     152     183 .. 0.75
   2 ?    5.9   0.3     0.018        27       3      29 ..     196     222 ..     194     228 .. 0.86
   3 ?    9.3   1.4    0.0015       2.2       4      30 ..     239     265 ..     236     276 .. 0.88
   4 ?    5.0   0.9     0.036        54       7      26 ..     284     303 ..     280     329 .. 0.74
   5 ?   -2.1   0.0       6.8     1e+04       7      25 ..     326     344 ..     320     345 .. 0.80
   6 ?    9.0   0.9    0.0018       2.7       3      35 ..     409     446 ..     407     458 .. 0.74

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 7.7
      TPR_14   3 allalaeallalGdpdeAiallrr 26 
                 a+  l +al+a   ++eA+++ r+
  KOO20830.1 154 ARVSLSAALAACSLYAEAETVVRA 177
                 666677888888888888887765 PP

  == domain 2  score: 5.9 bits;  conditional E-value: 0.018
      TPR_14   3 allalaeallalGdpdeAiallrrala 29 
                 a++ l+ +l+a+G++++A++l+ ++l+
  KOO20830.1 196 ARMNLGVLLEAQGQTATAETLYVALLD 222
                 67779999**************98887 PP

  == domain 3  score: 9.3 bits;  conditional E-value: 0.0015
      TPR_14   4 llalaeallalGdpdeAiallrralal 30 
                  ++la a l++G+++eA+a +r +la+
  KOO20830.1 239 AMQLAGAALTQGRHAEAEAQYRPILAA 265
                 579*******************99986 PP

  == domain 4  score: 5.0 bits;  conditional E-value: 0.036
      TPR_14   7 laeallalGdpdeAiallrr 26 
                 l++all++ +++eA+al+r+
  KOO20830.1 284 LGSALLHQAKLREAEALYRA 303
                 899****************8 PP

  == domain 5  score: -2.1 bits;  conditional E-value: 6.8
      TPR_14   7 laeallalGdpdeAiallr 25 
                 l+  l ++Gd++ A  ll 
  KOO20830.1 326 LGVTLKERGDYANACPLLA 344
                 67789999***99998885 PP

  == domain 6  score: 9.0 bits;  conditional E-value: 0.0018
      TPR_14   3 allalaeallalGdpdeAiallrrala.....laPdda 35 
                 a+  la al+a+Gd+++A++l+  a +     ++P+++
  KOO20830.1 409 AQVHLAMALEARGDHARAAELYGLAHEvrirvQGPEHP 446
                 67789*****************9998877777444443 PP

>> zf-RING_2  Ring finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.5   5.2    0.0033         5       2      44 .]      66     122 ..      65     122 .. 0.68

  Alignments for each domain:
  == domain 1  score: 7.5 bits;  conditional E-value: 0.0033
   zf-RING_2   2 eCpICleelssadsvlllpCg.....HvfhreClerwlrssst..........CPlCr 44 
                 +C ICle+  +  ++l + Cg     H+ h  C+ r  + +++          C +C+
  KOO20830.1  66 TCYICLEPSAE-TELLSMGCGcrgtsHMVHSACAVRAAAAQQErtkswsswqlCLTCK 122
                 7*****88865.55565555444777899****9665333333356778888888886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (876 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       325  (0.0181271); expected 358.6 (0.02)
Passed bias filter:                      242  (0.0134977); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                        15  (0.000836633); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.64u 0.25s 00:00:00.89 Elapsed: 00:00:00.46
# Mc/sec: 5735.75
//
Query:       KOO20831.1  [L=369]
Description: yth domain family protein 2-like protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.9e-40  137.5   1.1    1.9e-39  135.3   1.1    1.9  1  YTH       YT521-B-like domain


Domain annotation for each model (and alignments):
>> YTH  YT521-B-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  135.3   1.1   1.1e-43   1.9e-39       1     166 []      68     203 ..      68     203 .. 0.96

  Alignments for each domain:
  == domain 1  score: 135.3 bits;  conditional E-value: 1.1e-43
                 EEEEEEEESHHHHHHHHHHHCEEEEEHHHHHHHHHHHHCS....EEEEEEEETTTSEEEEEEEEE......SEEBTTS-................GGCC CS
         YTH   1 kryFilKslseedlekSvetgvWatqkhnekkLdqafrts...ekVyLiFsvnksgeFfGyArmasssssssavelassaseesasesidasaeessfw 96 
                 +r++i+Ks+se+d++kS+++gvWa++   +++Ld+a+r+      ++L+Fsvn sg+F G+A+m       sa++++++                   w
  KOO20831.1  68 ARFYIIKSYSEDDVHKSIKYGVWASTDTGNRRLDAAYRETgakGPIFLFFSVNASGQFSGMAQME------SALDYTQR----------------FGSW 144
                 59*************************************99988*********************......********................7889 PP

                 --TTEE...........EEEEEEEEEEEEEEGHHCCCHCHCCCTT.BGCG--TTEEE-HHHHHHHHHHHC CS
         YTH  97 eaeskkeeaseeskswgkpFkveWistkrlpfsrtrhlrnpwnenreVkvsrdgtelepsvGrqLlelfe 166
                    ++         +w+++F+++W  +k++p++++rh+  ++nen++V++srd++e+ p+ Gr++l++f+
  KOO20831.1 145 G--QD---------KWNGTFRIKWTFVKDIPNNQFRHIVLANNENKPVTNSRDTQEVLPDQGREMLHIFH 203
                 7..33.........5****************************************************996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (369 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       301  (0.0167884); expected 358.6 (0.02)
Passed bias filter:                      255  (0.0142228); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.23s 00:00:00.69 Elapsed: 00:00:00.41
# Mc/sec: 2696.23
//
Query:       KOO20832.1  [L=982]
Description: cysteine desulfurase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    7.7e-25   87.6   0.0    2.2e-24   86.1   0.0    1.8  1  Aminotran_5    Aminotransferase class-V
    2.5e-14   53.4   0.0    5.7e-14   52.3   0.0    1.6  1  ATP_bind_3     PP-loop family
  ------ inclusion threshold ------
       0.21   10.7   0.0       0.34   10.0   0.0    1.2  1  Aminotran_1_2  Aminotransferase class I and II


Domain annotation for each model (and alignments):
>> Aminotran_5  Aminotransferase class-V
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   86.1   0.0   3.7e-28   2.2e-24       3     353 ..      54     475 ..      52     493 .. 0.78

  Alignments for each domain:
  == domain 1  score: 86.1 bits;  conditional E-value: 3.7e-28
                  EBTTTS----HHHHHHHHHHHHCTCCSSSSSSSHHHHHHHHHHHHHHHHHHHHHT-....STGGGEEEE.SSHHH.HHHHHHH...........HCCC CS
  Aminotran_5   3 ldsaAttqkpqeVldalqeyytdynanvhrsvhhlgkeatkaveearekvaelina....eseeeiift.sGtte.ainlval...........slar 83 
                   d++A+ +  + + d ++e     ++n+h s+ + g + ++ v ear  +++ +      +++++++f  sG+t  a+ lva+           ++a+
   KOO20832.1  54 ADYTASGRALAFIEDYVREAILPTYGNTHTSTTKTGRQSSDFVAEARVMIKNYLRCndrgKNADRVLFAgSGATAgANRLVAMlgllaptpearAAAH 151
                  5556666666666666677777789****************************976111156899***868999988888875322222211112233 PP

                  C.-TTTSE.EEEETTSHGGGTHHHHHHHHHHTEEEEEEEBETTSCBEGGGHHHH-....-TTEEEEEEESBETTTTEB--HHHHHHHHHHTT-EEEEE CS
  Aminotran_5  84 s.lkpgde.ivvteaehhanlvpwqelakrtgakvkvipldeegeldldelekll....nektklvaithvsnvtGtiqpveeigklakkkgalvlvD 175
                  +  ++++  + v+  ehh+nl+pw+e      a+v+ i   + g +dl +le++l        ++ a++++snvtG++ +v++i++l++ +gal + D
   KOO20832.1 152 AlPEAQRPvVFVGPYEHHSNLLPWRESV----ADVVSIGEAAAGGVDLHALEAALrahaHRPLRVGAFSAASNVTGILSDVDAITALLHTHGALAVWD 245
                  34344443155899***********998....89****999************9944433456899******************************** PP

                  -TTTTT..........TS---HHH.HTESEEEEETTT.TTSSTT-EEEEEEHHHHHTS..SS.STTSEEEEET.TEEEEHCTTGGGS.SS--HHHHHH CS
  Aminotran_5 176 aaqavg..........hipidvkk.lgvDflafsghK.llgPtGiGvlyvrkellekleplllggemveevsl.eettfaeapskfeaGTpnvagiig 260
                   a+a++          h   + +  +  D l+fs hK   gP+  Gvl+ +k+l  +   + +gg++v  vs   +  +++   + e+GTp ++g+i 
   KOO20832.1 246 YASAAPyaiglamnppHEDAERASlIAKDALFFSPHKfAGGPQAAGVLVYKKALATRGISTCPGGGTVFYVSReRHVYLKNDEEREEGGTPSIVGAIR 343
                  ***9863332222211333333222567*********7779*****************9**************66666888888999*********** PP

                  HHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCTSTTEEEES.-B-CTCBSEEEEEETTCSH................HHHHHHHHHT.TEEEEEE-TT CS
  Aminotran_5 261 lgaaleyleeigleaiekhekelaeyllerlkslpgvrlygpdkaerrasivsfnfkgvha................edvatlLdee.gIavrsGhhc 341
                   g++l++ +++g+ ai++ + +l  +++++    p + ++g +++ +r  i++++f+  +                 + v+ lL++  gI  r+G  c
   KOO20832.1 344 AGLVLQLQKAVGAPAIARADGALLGACRAAWGRHPRIAILG-HPTAKRLPIFALAFRVTDGtaggmsggggplllhhNYVVALLNDLfGIQARGGCMC 440
                  *****************************************.57888888999988877777799999*******9899999999999********** PP

                  THHHHH.HTT.S......................- CS
  Aminotran_5 342 aqplmk.rlale......................g 353
                  a p+ + +l+++                      g
   KOO20832.1 441 AGPYSQqLLGIDgtlsdafeaqlvkkednellrpG 475
                  *9986514555544555555555555555555555 PP

>> ATP_bind_3  PP-loop family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.3   0.0   9.5e-18   5.7e-14       2     162 ..     669     836 ..     668     842 .. 0.83

  Alignments for each domain:
  == domain 1  score: 52.3 bits;  conditional E-value: 9.5e-18
                 EEEE--SCHHHHHHHHHHHHHCTTTTT..EEEEEEEE-SSSTCHHHHHHHHHHHHHHTT-EEEEEE--H.........HHCTTSTCCCHHHHHHHHHHH CS
  ATP_bind_3   2 vlvAvSgGlDSmaLllllaklkkklgi..klvaihvdhglreeskeeaelvkelckklnikleiekvdv.........akkkgknleeaARelRYevlk 89 
                 vlv++SgG DS+a+l++l+ l+k++ +  +l a++vd g       +   +  +c+kl++++++ek ++         ++ +  ++     ++   vl 
  KOO20832.1 669 VLVGLSGGKDSLAMLHILHALQKRTPFqwELGACTVDPGAD---GFDPSPLIPYCAKLGLPYFYEKHPLleiaepcmaKEGNRVSICSFCSRMKRGVLY 764
                 89*****************9999876666********8865...567778889*************999999999976444455666666777779*** PP

                 HCHHCCT.CEEE---BHHHHHHHHHHHHCCT--CCHHH-S-SEEEETTCCEE-CCCT--HHHHHHHHHHTT-- CS
  ATP_bind_3  90 ealkkegievlllAhhadDqaEtfllrlargsglaglagikeaseiasirlvRPlLkvskeeleeylkekkik 162
                  ++++eg++vl++A+h dD aE fl++   +  l+++ +  +    ++ r++RPl  v+ +e e++ +  +++
  KOO20832.1 765 ATARREGYNVLAMAQHLDDLAESFLMSAMHNGALRSMKAHYTID-AQDLRVIRPLAYVREHEAEAFSESVRLP 836
                 *****************************987776665555544.577**********999999988877665 PP

>> Aminotran_1_2  Aminotransferase class I and II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   0.0   5.7e-05      0.34     101     189 ..     164     247 ..     107     269 .. 0.87

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 5.7e-05
                    SS-THHHHHHHHTTSEEEEEEBEETTTTEE-HHHHHHHHTTHHCTTETEEEEEEESS-TTT--B--HHHHHHHHHHHHHTTEEEEEEET CS
  Aminotran_1_2 101 ptyasyknilrlsggevvryplyseedfhldlealeealkeapegnkktkvilvesphNPtGtvatleeleklldlakkynlllfvDea 189
                      y++++n l ++ +    +++ +++  ++dl+ale+al+ ++ +    +v ++  ++N tG + + + +++l    + +++l + D a
     KOO20832.1 164 GPYEHHSNLLPWRESVADVVSIGEAAAGGVDLHALEAALRAHAHRPL--RVGAFSAASNVTGILSDVDAITAL---LHTHGALAVWDYA 247
                    3489************************************8665555..9999********************...9999999998865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (982 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       393  (0.0219198); expected 358.6 (0.02)
Passed bias filter:                      318  (0.0177366); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.69u 0.28s 00:00:00.97 Elapsed: 00:00:00.44
# Mc/sec: 6779.47
//
Query:       KOO20833.1  [L=359]
Description: hypothetical protein Ctob_000007 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.46   10.3   3.6       0.55   10.0   2.7    1.5  2  DUF4741   Domain of unknown function (DUF4741)


Domain annotation for each model (and alignments):
>> DUF4741  Domain of unknown function (DUF4741)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   2.7   3.1e-05      0.55      51     108 ..      86     143 ..      71     166 .. 0.68
   2 ?   -1.9   0.1      0.14   2.5e+03      89     131 ..     155     197 ..     128     207 .. 0.70

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 3.1e-05
     DUF4741  51 pslsvraqragprasreegtfwtervgqerrlirsgssq.nesqedqgadlisheglka 108
                  +l++r qra  +  r+ gtf +er  qe +li    s+  e q      + s+e  ka
  KOO20833.1  86 GALAARRQRADLE-RRKAGTFEKEREAQETQLISRWKSKsGELQASLKEAVASYEAHKA 143
                 67999****9876.6999**************976555414555544444444444444 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 0.14
     DUF4741  89 qnesqedqgadlisheglkadnqresstwanevedrrpqctpa 131
                 +  ++  + adl     +++ +q e +    e++  r  +tp+
  KOO20833.1 155 RASAEAARNADLEVERAIRTAEQAEEARLKAELDKLRMSTTPS 197
                 4445555677777777788778887777777777777777776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (359 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1117  (0.0623013); expected 358.6 (0.02)
Passed bias filter:                      388  (0.0216409); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.50u 0.26s 00:00:00.76 Elapsed: 00:00:00.41
# Mc/sec: 2603.96
//
Query:       KOO20834.1  [L=541]
Description: calmodulin [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    4.9e-47  154.0   9.8    0.00021   20.6   0.1    9.6  9  EF-hand_1     EF hand
    2.2e-45  153.0   4.1    1.2e-10   41.7   0.0    5.4  5  EF-hand_7     EF-hand domain pair
      1e-43  143.5  14.9    0.00013   21.6   0.0    9.7  9  EF-hand_6     EF-hand domain
      2e-37  125.0  12.3    0.00016   21.0   0.0    9.7  9  EF-hand_5     EF hand
    4.6e-33  112.8   3.5    3.8e-07   29.8   0.0    6.4  6  EF-hand_8     EF-hand domain pair
    2.7e-09   37.2   0.4          1    9.8   0.0    5.2  5  EF-hand_9     EF-hand domain
    3.9e-05   23.9   0.1        3.8    7.9   0.0    4.8  5  SPARC_Ca_bdg  Secreted protein acidic and rich in cysteine Ca
    0.00014   22.1   1.5        7.1    7.1   0.0    5.5  6  EF-hand_14    EF-hand domain
    0.00026   21.1   0.1        2.2    8.4   0.1    4.5  4  EF-hand_2     EF hand
     0.0046   16.9   0.5         30    4.5   0.0    5.5  6  Caleosin      Caleosin related protein
  ------ inclusion threshold ------
      0.018   15.5   0.3       0.23   11.9   0.2    2.8  3  DUF3037       Protein of unknown function (DUF3037)
      0.079   13.0   0.0        1.3    9.1   0.0    2.8  3  DUF5640       Family of unknown function (DUF5640)
      0.084   13.0   0.2       0.17   12.0   0.2    1.5  1  DUF1798       Bacterial domain of unknown function (DUF1798)
      0.084   13.2   3.0       0.19   12.1   3.0    1.6  1  CC2-LZ        Leucine zipper of domain CC2 of NEMO, NF-kappa-
      0.088   12.5   1.5       0.15   11.7   1.5    1.4  1  GrpE          GrpE
        0.1   12.5   0.3         16    5.5   0.0    4.4  5  EF-hand_10    EF hand
       0.12   13.1   1.3       0.29   11.8   1.3    1.7  1  BLI1          BLOC-1 interactor 1
       0.21   11.6   1.5       0.77    9.8   1.5    2.0  2  DUF1664       Protein of unknown function (DUF1664)
        3.5    7.9   5.4         17    5.7   0.1    3.9  4  Dockerin_1    Dockerin type I domain


Domain annotation for each model (and alignments):
>> EF-hand_1  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.4   0.0   4.6e-05     0.044       4      28 ..      68      92 ..      65      93 .. 0.89
   2 !   19.5   0.0     5e-07   0.00047       6      27 ..     130     151 ..     128     153 .. 0.87
   3 !   14.2   0.0   2.5e-05     0.024       5      28 ..     165     188 ..     162     189 .. 0.87
   4 !   20.6   0.1   2.2e-07   0.00021       5      28 ..     191     214 ..     189     215 .. 0.91
   5 !   10.1   0.0   0.00052      0.49       9      27 ..     231     249 ..     231     251 .. 0.91
   6 !   16.1   0.0   6.2e-06    0.0059       5      28 ..     253     276 ..     251     277 .. 0.91
   7 !   19.8   0.0     4e-07   0.00038       1      28 [.     285     312 ..     285     313 .. 0.94
   8 !   18.6   0.0   9.8e-07   0.00093       5      28 ..     315     338 ..     314     339 .. 0.91
   9 !   18.2   0.1   1.3e-06    0.0012       4      26 ..     350     372 ..     348     375 .. 0.87

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 4.6e-05
                HHHHHHTTTSSSEEEHHHHHHHHHH CS
   EF-hand_1  4 eiFrefDkDgdGkIdfeEfkellkk 28
                + F+ +D++ +G Id  E+++ l +
  KOO20834.1 68 DTFDSLDRNESGSIDVTELRRGLHT 92
                789*****************99876 PP

  == domain 2  score: 19.5 bits;  conditional E-value: 5e-07
                 HHHHTTTSSSEEEHHHHHHHHH CS
   EF-hand_1   6 FrefDkDgdGkIdfeEfkellk 27 
                    fD+Dg+G++d +E+ke+l 
  KOO20834.1 130 LLTFDRDGSGTLDVDELKEALV 151
                 567****************986 PP

  == domain 3  score: 14.2 bits;  conditional E-value: 2.5e-05
                 HHHHHTTTSSSEEEHHHHHHHHHH CS
   EF-hand_1   5 iFrefDkDgdGkIdfeEfkellkk 28 
                 i r  D Dg+Gk+d+ Ef +l+++
  KOO20834.1 165 IARAWDADGSGKLDLLEFTDLVRT 188
                 66789***************9987 PP

  == domain 4  score: 20.6 bits;  conditional E-value: 2.2e-07
                 HHHHHTTTSSSEEEHHHHHHHHHH CS
   EF-hand_1   5 iFrefDkDgdGkIdfeEfkellkk 28 
                  F+++DkDg+G Id+eE + +l++
  KOO20834.1 191 TFMKYDKDGSGDIDLEEIRPALRR 214
                 79****************999987 PP

  == domain 5  score: 10.1 bits;  conditional E-value: 0.00052
                 HTTTSSSEEEHHHHHHHHH CS
   EF-hand_1   9 fDkDgdGkIdfeEfkellk 27 
                 +D D +GkI++ Ef  l++
  KOO20834.1 231 YDNDESGKIELHEFAVLVR 249
                 8*************99887 PP

  == domain 6  score: 16.1 bits;  conditional E-value: 6.2e-06
                 HHHHHTTTSSSEEEHHHHHHHHHH CS
   EF-hand_1   5 iFrefDkDgdGkIdfeEfkellkk 28 
                 +F+ +DkD++G +d+ E++ +l+k
  KOO20834.1 253 VFASYDKDHSGALDIHELRPALAK 276
                 799****************99887 PP

  == domain 7  score: 19.8 bits;  conditional E-value: 4e-07
                 HHHHHHHHHTTTSSSEEEHHHHHHHHHH CS
   EF-hand_1   1 elkeiFrefDkDgdGkIdfeEfkellkk 28 
                 e+++i++  D +g+G+I++ Ef e++++
  KOO20834.1 285 EVRQIIKAWDDNGNGTINLLEFAEIVRD 312
                 799*********************9987 PP

  == domain 8  score: 18.6 bits;  conditional E-value: 9.8e-07
                 HHHHHTTTSSSEEEHHHHHHHHHH CS
   EF-hand_1   5 iFrefDkDgdGkIdfeEfkellkk 28 
                 +F+ fD D++G I+  E++ +l k
  KOO20834.1 315 VFEQFDLDRSGSITAAELRVALGK 338
                 8******************99976 PP

  == domain 9  score: 18.2 bits;  conditional E-value: 1.3e-06
                 HHHHHHTTTSSSEEEHHHHHHHH CS
   EF-hand_1   4 eiFrefDkDgdGkIdfeEfkell 26 
                 ++ + +D D +G+I+f+Ef++l 
  KOO20834.1 350 DLLNQYDLDSSGTIEFSEFRKLA 372
                 67899***************986 PP

>> EF-hand_7  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   0.1   7.4e-06     0.007       5      38 ..      67      94 ..      65     123 .. 0.74
   2 !   31.6   0.1   1.7e-10   1.6e-07      10      70 ..     132     186 ..     127     187 .. 0.93
   3 !   23.9   0.0   4.4e-08   4.1e-05       6      70 ..     190     248 ..     186     249 .. 0.87
   4 !   41.7   0.0   1.3e-13   1.2e-10       7      71 .]     253     311 ..     251     311 .. 0.92
   5 !   35.8   0.0     9e-12   8.5e-09       6      70 ..     314     372 ..     313     373 .. 0.93

  Alignments for each domain:
  == domain 1  score: 16.8 bits;  conditional E-value: 7.4e-06
   EF-hand_7  5 keaFkelDtdgdgyldkeellrllrkifqgageg 38
                 + F++lD++ +g++d++el+r l+ +      g
  KOO20834.1 67 TDTFDSLDRNESGSIDVTELRRGLHTL------G 94
                678******************977754......2 PP

  == domain 2  score: 31.6 bits;  conditional E-value: 1.7e-10
   EF-hand_7  10 elDtdgdgyldkeellrllrkifqgagegsklsdeelellfkefDtdkdGvisfdEFlkly 70 
                  +D+dg+g ld++el+++l         g ++sd  + ++ + +D d++G++++ EF  l+
  KOO20834.1 132 TFDRDGSGTLDVDELKEALV------QLGMNVSDRNVAKIARAWDADGSGKLDLLEFTDLV 186
                 59*****************9......788888999**********************9876 PP

  == domain 3  score: 23.9 bits;  conditional E-value: 4.4e-08
   EF-hand_7   6 eaFkelDtdgdgyldkeellrllrkifqgagegsklsdeelellfkefDtdkdGvisfdEFlkly 70 
                 + F ++D+dg+g +d ee++ +lr      + g +   +   ++++  D d +G+i + EF  l+
  KOO20834.1 190 QTFMKYDKDGSGDIDLEEIRPALR------RLGIPAETKMTNAILNWYDNDESGKIELHEFAVLV 248
                 569*********************......788886666677999999*************8765 PP

  == domain 4  score: 41.7 bits;  conditional E-value: 1.3e-13
   EF-hand_7   7 aFkelDtdgdgyldkeellrllrkifqgagegsklsdeelellfkefDtdkdGvisfdEFlklyr 71 
                 +F ++D+d++g ld  el+ +l         g   s++e+++++k +D +++G+i++ EF +++r
  KOO20834.1 253 VFASYDKDHSGALDIHELRPALA------KLGLAASEDEVRQIIKAWDDNGNGTINLLEFAEIVR 311
                 6**********************......6777778999**********************9975 PP

  == domain 5  score: 35.8 bits;  conditional E-value: 9e-12
   EF-hand_7   6 eaFkelDtdgdgyldkeellrllrkifqgagegsklsdeelellfkefDtdkdGvisfdEFlkly 70 
                 ++F+++D d++g+++ +el+ +l         g+++s +  ++l++  D+d++G+i f+EF+kl 
  KOO20834.1 314 QVFEQFDLDRSGSITAAELRVALG------KLGKNVSHHGAQDLLNQYDLDSSGTIEFSEFRKLA 372
                 58******************6666......99******************************975 PP

>> EF-hand_6  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.1   5.1e-06    0.0048       4      31 .]      68      94 ..      65      97 .. 0.89
   2 !   17.8   0.1   2.3e-06    0.0022       9      27 ..     133     151 ..     128     156 .. 0.89
   3 !   11.6   0.1   0.00022      0.21       7      27 ..     167     187 ..     164     190 .. 0.89
   4 !   21.2   0.0   1.9e-07   0.00018       5      31 .]     191     216 ..     188     216 .. 0.91
   5 !    8.8   0.0    0.0018       1.7       7      26 ..     229     248 ..     225     252 .. 0.82
   6 !   19.2   0.0   7.9e-07   0.00075       4      31 .]     252     278 ..     248     278 .. 0.92
   7 !   14.0   0.0   3.7e-05     0.035       2      29 ..     286     312 ..     285     314 .. 0.88
   8 !   21.6   0.0   1.4e-07   0.00013       4      31 .]     314     340 ..     312     341 .. 0.92
   9 !   13.5   0.0   5.5e-05     0.052       4      25 ..     350     371 ..     348     377 .. 0.88

  Alignments for each domain:
  == domain 1  score: 16.7 bits;  conditional E-value: 5.1e-06
   EF-hand_6  4 eaFklfDkdgdGkidaeElrkalrkalg 31
                + F+ +D++ +G+id  Elr+ l   lg
  KOO20834.1 68 DTFDSLDRNESGSIDVTELRRGLH-TLG 94
                78*******************998.454 PP

  == domain 2  score: 17.8 bits;  conditional E-value: 2.3e-06
   EF-hand_6   9 fDkdgdGkidaeElrkalr 27 
                 fD+dg+G++d +El+ al 
  KOO20834.1 133 FDRDGSGTLDVDELKEALV 151
                 9***************997 PP

  == domain 3  score: 11.6 bits;  conditional E-value: 0.00022
   EF-hand_6   7 klfDkdgdGkidaeElrkalr 27 
                 +++D dg+Gk+d  E+ ++ r
  KOO20834.1 167 RAWDADGSGKLDLLEFTDLVR 187
                 578*************99988 PP

  == domain 4  score: 21.2 bits;  conditional E-value: 1.9e-07
   EF-hand_6   5 aFklfDkdgdGkidaeElrkalrkalg 31 
                  F+++Dkdg+G id eE+r alr  lg
  KOO20834.1 191 TFMKYDKDGSGDIDLEEIRPALR-RLG 216
                 6*********************9.565 PP

  == domain 5  score: 8.8 bits;  conditional E-value: 0.0018
   EF-hand_6   7 klfDkdgdGkidaeElrkal 26 
                 + +D+d +Gki  +E+  + 
  KOO20834.1 229 NWYDNDESGKIELHEFAVLV 248
                 679************97655 PP

  == domain 6  score: 19.2 bits;  conditional E-value: 7.9e-07
   EF-hand_6   4 eaFklfDkdgdGkidaeElrkalrkalg 31 
                 ++F  +Dkd++G +d++Elr al  +lg
  KOO20834.1 252 SVFASYDKDHSGALDIHELRPALA-KLG 278
                 69******************9999.676 PP

  == domain 7  score: 14.0 bits;  conditional E-value: 3.7e-05
   EF-hand_6   2 lreaFklfDkdgdGkidaeElrkalrka 29 
                 +r++ k++D +g+G+i+  E+  + r +
  KOO20834.1 286 VRQIIKAWDDNGNGTINLLEFAEIVR-D 312
                 688889****************9998.4 PP

  == domain 8  score: 21.6 bits;  conditional E-value: 1.4e-07
   EF-hand_6   4 eaFklfDkdgdGkidaeElrkalrkalg 31 
                 ++F++fD d++G+i+a+Elr al  +lg
  KOO20834.1 314 QVFEQFDLDRSGSITAAELRVALG-KLG 340
                 69********************99.666 PP

  == domain 9  score: 13.5 bits;  conditional E-value: 5.5e-05
   EF-hand_6   4 eaFklfDkdgdGkidaeElrka 25 
                 ++ +++D d +G+i ++E+rk+
  KOO20834.1 350 DLLNQYDLDSSGTIEFSEFRKL 371
                 67899***************97 PP

>> EF-hand_5  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.0   0.0   1.5e-06    0.0014       3      23 ..      68      88 ..      66      91 .. 0.91
   2 !   15.6   0.1     9e-06    0.0085       8      24 ..     133     150 ..     128     151 .. 0.89
   3 !    9.8   0.1   0.00061      0.58       9      24 ..     170     185 ..     167     186 .. 0.87
   4 !   16.9   0.1   3.4e-06    0.0032       4      21 ..     191     208 ..     189     210 .. 0.90
   5 !    6.0   0.0    0.0096       9.1       9      24 ..     232     247 ..     225     248 .. 0.87
   6 !   11.0   0.0   0.00024      0.23       4      22 ..     253     271 ..     250     272 .. 0.91
   7 !    7.3   0.0    0.0036       3.4       8      24 ..     293     309 ..     286     310 .. 0.84
   8 !   21.0   0.0   1.7e-07   0.00016       4      22 ..     315     333 ..     313     336 .. 0.92
   9 !   17.8   0.1   1.7e-06    0.0016       2      24 ..     349     371 ..     348     372 .. 0.93

  Alignments for each domain:
  == domain 1  score: 18.0 bits;  conditional E-value: 1.5e-06
                HHHHHH-SS-SSCE-HHHHHH CS
   EF-hand_5  3 dtFqaiDlNgDGkIskeELkt 23
                dtF+ +D N +G I++ EL++
  KOO20834.1 68 DTFDSLDRNESGSIDVTELRR 88
                89*****************98 PP

  == domain 2  score: 15.6 bits;  conditional E-value: 9e-06
                 H-SS-SSCE-HHHHHH.H CS
   EF-hand_5   8 iDlNgDGkIskeELkt.l 24 
                 +D +g+G+++++ELk+ l
  KOO20834.1 133 FDRDGSGTLDVDELKEaL 150
                 9*************9855 PP

  == domain 3  score: 9.8 bits;  conditional E-value: 0.00061
                 -SS-SSCE-HHHHHHH CS
   EF-hand_5   9 DlNgDGkIskeELktl 24 
                 D++g+Gk++  E+  l
  KOO20834.1 170 DADGSGKLDLLEFTDL 185
                 9************876 PP

  == domain 4  score: 16.9 bits;  conditional E-value: 3.4e-06
                 HHHHH-SS-SSCE-HHHH CS
   EF-hand_5   4 tFqaiDlNgDGkIskeEL 21 
                 tF + D++g+G I+ eE 
  KOO20834.1 191 TFMKYDKDGSGDIDLEEI 208
                 7****************6 PP

  == domain 5  score: 6.0 bits;  conditional E-value: 0.0096
                 -SS-SSCE-HHHHHHH CS
   EF-hand_5   9 DlNgDGkIskeELktl 24 
                 D + +GkI   E+  l
  KOO20834.1 232 DNDESGKIELHEFAVL 247
                 99***********876 PP

  == domain 6  score: 11.0 bits;  conditional E-value: 0.00024
                 HHHHH-SS-SSCE-HHHHH CS
   EF-hand_5   4 tFqaiDlNgDGkIskeELk 22 
                 +F   D++++G +++ EL+
  KOO20834.1 253 VFASYDKDHSGALDIHELR 271
                 8999*************97 PP

  == domain 7  score: 7.3 bits;  conditional E-value: 0.0036
                 H-SS-SSCE-HHHHHHH CS
   EF-hand_5   8 iDlNgDGkIskeELktl 24 
                  D Ng G+I+  E+ ++
  KOO20834.1 293 WDDNGNGTINLLEFAEI 309
                 599***********986 PP

  == domain 8  score: 21.0 bits;  conditional E-value: 1.7e-07
                 HHHHH-SS-SSCE-HHHHH CS
   EF-hand_5   4 tFqaiDlNgDGkIskeELk 22 
                 +F+++Dl+++G I++ EL+
  KOO20834.1 315 VFEQFDLDRSGSITAAELR 333
                 7*****************8 PP

  == domain 9  score: 17.8 bits;  conditional E-value: 1.7e-06
                 HHHHHHH-SS-SSCE-HHHHHHH CS
   EF-hand_5   2 kdtFqaiDlNgDGkIskeELktl 24 
                 +d++++ Dl+ +G+I ++E+++l
  KOO20834.1 349 QDLLNQYDLDSSGTIEFSEFRKL 371
                 6899*****************97 PP

>> EF-hand_8  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.6   0.0     0.015        14       1      20 [.      77      91 ..      66     104 .. 0.71
   2 !    9.1   0.2    0.0012       1.1      30      48 ..     128     146 ..     128     148 .. 0.89
   3 !   24.2   0.1   2.4e-08   2.2e-05       2      52 ..     138     186 ..     137     189 .. 0.93
   4 !   17.8   0.0   2.4e-06    0.0022       2      53 ..     200     249 ..     199     251 .. 0.92
   5 !   29.6   0.0   4.8e-10   4.5e-07       2      51 ..     262     309 ..     261     313 .. 0.92
   6 !   29.8   0.0     4e-10   3.8e-07       2      54 ..     324     374 ..     316     375 .. 0.95

  Alignments for each domain:
  == domain 1  score: 5.6 bits;  conditional E-value: 0.015
   EF-hand_8  1 ekgkItreelrrilrilglk 20
                e+g+I+++elrr     gl+
  KOO20834.1 77 ESGSIDVTELRR-----GLH 91
                467777777777.....554 PP

  == domain 2  score: 9.1 bits;  conditional E-value: 0.0012
   EF-hand_8  30 ilfrefDtdgdGkisfeEF 48 
                 +++ +fD+dg+G+++ +E 
  KOO20834.1 128 HMLLTFDRDGSGTLDVDEL 146
                 68889************97 PP

  == domain 3  score: 24.2 bits;  conditional E-value: 2.4e-08
   EF-hand_8   2 kgkItreelrrilrilglkkglseeevdilfrefDtdgdGkisfeEFcvll 52 
                 +g ++++el+++l  lg++  +s+ +v  + r+ D dg+Gk+++ EF +l+
  KOO20834.1 138 SGTLDVDELKEALVQLGMN--VSDRNVAKIARAWDADGSGKLDLLEFTDLV 186
                 799**********888***..**************************9887 PP

  == domain 4  score: 17.8 bits;  conditional E-value: 2.4e-06
   EF-hand_8   2 kgkItreelrrilrilglkkglseeevdilfrefDtdgdGkisfeEFcvlle 53 
                 +g I+ ee r +lr lg++     +   ++++  D d++Gki + EF vl+ 
  KOO20834.1 200 SGDIDLEEIRPALRRLGIP--AETKMTNAILNWYDNDESGKIELHEFAVLVR 249
                 799**********999*99..77777***********************986 PP

  == domain 5  score: 29.6 bits;  conditional E-value: 4.8e-10
   EF-hand_8   2 kgkItreelrrilrilglkkglseeevdilfrefDtdgdGkisfeEFcvl 51 
                 +g ++ +elr +l++lgl+   se+ev+ ++++ D +g+G+i++ EF + 
  KOO20834.1 262 SGALDIHELRPALAKLGLA--ASEDEVRQIIKAWDDNGNGTINLLEFAEI 309
                 688899*************..**************************875 PP

  == domain 6  score: 29.8 bits;  conditional E-value: 4e-10
   EF-hand_8   2 kgkItreelrrilrilglkkglseeevdilfrefDtdgdGkisfeEFcvller 54 
                 +g+It +elr +l +lg++  +s + +++l++  D+d +G+i f EF  l+e+
  KOO20834.1 324 SGSITAAELRVALGKLGKN--VSHHGAQDLLNQYDLDSSGTIEFSEFRKLAED 374
                 69***********667*99..***************************99987 PP

>> EF-hand_9  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.4   0.0      0.45   4.2e+02       3      27 ..      69      93 ..      67     125 .. 0.83
   2 !    6.9   0.0    0.0083       7.8       7      63 ..     133     187 ..     130     189 .. 0.92
   3 ?    4.1   0.0     0.061        58       3      64 ..     191     250 ..     190     252 .. 0.84
   4 !    8.3   0.0    0.0029       2.8       2      64 ..     252     312 ..     251     313 .. 0.95
   5 !    9.8   0.0    0.0011         1       3      60 ..     315     370 ..     314     374 .. 0.94

  Alignments for each domain:
  == domain 1  score: 1.4 bits;  conditional E-value: 0.45
   EF-hand_9  3 vFevcDtqktGrVpvsrlidyLrav 27
                +F+  D+++ G + v++l   L   
  KOO20834.1 69 TFDSLDRNESGSIDVTELRRGLHTL 93
                6999***********9997766655 PP

  == domain 2  score: 6.9 bits;  conditional E-value: 0.0083
   EF-hand_9   7 cDtqktGrVpvsrlidyLravtaqdpeeseLeelakelDPdgedasvdldtflrvmr 63 
                 +D++  G+  v +l++ L + +  + ++ ++ + a+  D dg  +++dl  f   +r
  KOO20834.1 133 FDRDGSGTLDVDELKEALVQLGM-NVSDRNVAKIARAWDADGS-GKLDLLEFTDLVR 187
                 9**********************.999****************.9999988877665 PP

  == domain 3  score: 4.1 bits;  conditional E-value: 0.061
   EF-hand_9   3 vFevcDtqktGrVpvsrlidyLravtaqdpeeseL.eelakelDPdgedasvdldtflrvmre 64 
                 +F  +D +  G + + ++   Lr  +   p e ++ +   + +D d+  ++++l  f + +r+
  KOO20834.1 191 TFMKYDKDGSGDIDLEEIRPALRRLGI--PAETKMtNAILNWYDNDES-GKIELHEFAVLVRD 250
                 68889*********************9..9999761456777887777.99999999998887 PP

  == domain 4  score: 8.3 bits;  conditional E-value: 0.0029
   EF-hand_9   2 tvFevcDtqktGrVpvsrlidyLravtaqdpeeseLeelakelDPdgedasvdldtflrvmre 64 
                 +vF  +D +  G   + +l   L + +  + +e e+ +  k  D +g+ ++++l  f +++r+
  KOO20834.1 252 SVFASYDKDHSGALDIHELRPALAKLGL-AASEDEVRQIIKAWDDNGN-GTINLLEFAEIVRD 312
                 68999***********************.99999**********9999.*********99986 PP

  == domain 5  score: 9.8 bits;  conditional E-value: 0.0011
   EF-hand_9   3 vFevcDtqktGrVpvsrlidyLravtaqdpeeseLeelakelDPdgedasvdldtflr 60 
                 vFe +D ++ G ++ ++l   L + ++ + + +  ++l +++D d   ++++++ f +
  KOO20834.1 315 VFEQFDLDRSGSITAAELRVALGKLGK-NVSHHGAQDLLNQYDLDSS-GTIEFSEFRK 370
                 7**************************.88999************99.******9976 PP

>> SPARC_Ca_bdg  Secreted protein acidic and rich in cysteine Ca binding region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.2   0.1     0.053        50      22      77 ..      31      87 ..      13      99 .. 0.68
   2 ?   -0.3   0.0       1.4   1.3e+03      59     111 ..     129     183 ..      93     185 .. 0.77
   3 ?    1.5   0.0      0.37   3.5e+02      60     111 ..     192     245 ..     187     246 .. 0.79
   4 !    7.9   0.0     0.004       3.8      60     112 ..     254     308 ..     251     309 .. 0.89
   5 ?    2.7   0.0      0.16   1.5e+02      60     111 ..     316     369 ..     313     370 .. 0.85

  Alignments for each domain:
  == domain 1  score: 4.2 bits;  conditional E-value: 0.053
  SPARC_Ca_bdg 22 nlleelkereeekehleel.ekkeeeknlkeckepvawkFsklDtnsdkvlsksELa 77
                    ++e+ke+ ++ e l+ + ++ke+    ++ + +++  F++lD n+ ++++ +EL+
    KOO20834.1 31 HGMQEMKEELQQIEVLAGQrKAKENVARISSAVLNLTDTFDSLDRNESGSIDVTELR 87
                  445666666666644333202333334445555666779****************97 PP

  == domain 2  score: -0.3 bits;  conditional E-value: 1.4
  SPARC_Ca_bdg  59 kFsklDtnsdkvlsksELap..lraplvklehCikpflescDadkdkkislkEwc 111
                   +  ++D +  ++l+  EL++  +++ +   ++ +++  ++ Dad  +k++l E++
    KOO20834.1 129 MLLTFDRDGSGTLDVDELKEalVQLGMNVSDRNVAKIARAWDADGSGKLDLLEFT 183
                   5567888889999999998733555667778888999999999999999998886 PP

  == domain 3  score: 1.5 bits;  conditional E-value: 0.37
  SPARC_Ca_bdg  60 FsklDtnsdkvlsksELaplrapl.vkleh.CikpflescDadkdkkislkEwc 111
                   F k D++  + ++ +E++p    l ++ e+  +++ l+  D d+ +ki+l+E++
    KOO20834.1 192 FMKYDKDGSGDIDLEEIRPALRRLgIPAETkMTNAILNWYDNDESGKIELHEFA 245
                   889999999999999999754444377775167789999************996 PP

  == domain 4  score: 7.9 bits;  conditional E-value: 0.004
  SPARC_Ca_bdg  60 FsklDtnsdkvlsksELaplrap..lvklehCikpflescDadkdkkislkEwce 112
                   F + D+++ + l+ +EL+p  a+  l   e  +++ +++ D + +++i+l E++e
    KOO20834.1 254 FASYDKDHSGALDIHELRPALAKlgLAASEDEVRQIIKAWDDNGNGTINLLEFAE 308
                   8999*************997655227899***********************985 PP

  == domain 5  score: 2.7 bits;  conditional E-value: 0.16
  SPARC_Ca_bdg  60 FsklDtnsdkvlsksELaplraplvkl..ehCikpflescDadkdkkislkEwc 111
                   F+++D ++ ++++ +EL+    +l k+   h  + +l++ D+d+ ++i+ +E+ 
    KOO20834.1 316 FEQFDLDRSGSITAAELRVALGKLGKNvsHHGAQDLLNQYDLDSSGTIEFSEFR 369
                   99999999999*****9988777866433789999**************99995 PP

>> EF-hand_14  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.6   0.1      0.76   7.1e+02      31      50 ..       5      24 ..       2      47 .. 0.75
   2 ?    3.2   0.0      0.12   1.1e+02       6      33 ..      70      97 ..      67     132 .. 0.87
   3 ?    4.3   0.0     0.056        53       8      42 ..     132     166 ..     124     172 .. 0.86
   4 ?   -2.2   0.0       5.6   5.3e+03       6      31 ..     192     217 ..     190     220 .. 0.86
   5 ?   -1.6   0.0       3.7   3.5e+03       3      24 ..     225     246 ..     223     251 .. 0.83
   6 !    7.1   0.0    0.0075       7.1       4      46 ..     252     294 ..     248     330 .. 0.85

  Alignments for each domain:
  == domain 1  score: 0.6 bits;  conditional E-value: 0.76
  EF-hand_14 31 irkdDpRLkellkklkkvek 50
                ++k D RL+++ ++l+   +
  KOO20834.1  5 LQKMDKRLEKMNDALEAKAD 24
                78899999999999987655 PP

  == domain 2  score: 3.2 bits;  conditional E-value: 0.12
  EF-hand_14  6 fdlfkdeetdklsvakllkaLaetGirk 33
                fd+++++e++++ v +l + L++ G+ +
  KOO20834.1 70 FDSLDRNESGSIDVTELRRGLHTLGMDS 97
                999999****************999875 PP

  == domain 3  score: 4.3 bits;  conditional E-value: 0.056
  EF-hand_14   8 lfkdeetdklsvakllkaLaetGirkdDpRLkell 42 
                 +f+++++++l v +l +aL + G++ +D  ++++ 
  KOO20834.1 132 TFDRDGSGTLDVDELKEALVQLGMNVSDRNVAKIA 166
                 57789999********************8887765 PP

  == domain 4  score: -2.2 bits;  conditional E-value: 5.6
  EF-hand_14   6 fdlfkdeetdklsvakllkaLaetGi 31 
                 f  +++++++++ ++++  aL+  Gi
  KOO20834.1 192 FMKYDKDGSGDIDLEEIRPALRRLGI 217
                 55688899999************999 PP

  == domain 5  score: -1.6 bits;  conditional E-value: 3.7
  EF-hand_14   3 dllfdlfkdeetdklsvakllk 24 
                 +++ + ++++e++k++++++  
  KOO20834.1 225 NAILNWYDNDESGKIELHEFAV 246
                 6789999*9*******999975 PP

  == domain 6  score: 7.1 bits;  conditional E-value: 0.0075
  EF-hand_14   4 llfdlfkdeetdklsvakllkaLaetGirkdDpRLkellkklk 46 
                  +f ++++++++ l +++l  aLa+ G+  +   +++++k+  
  KOO20834.1 252 SVFASYDKDHSGALDIHELRPALAKLGLAASEDEVRQIIKAWD 294
                 59**************************999988888888765 PP

>> EF-hand_2  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.4   0.1    0.0024       2.2      52     122 ..      74     153 ..       5     154 .. 0.75
   2 ?    4.9   0.0      0.03        28      94     118 ..     223     247 ..     168     249 .. 0.85
   3 ?    1.1   0.0      0.42     4e+02     100     120 ..     317     337 ..     294     340 .. 0.85
   4 ?   -1.5   0.0       2.8   2.7e+03      98     116 ..     351     369 ..     348     371 .. 0.84

  Alignments for each domain:
  == domain 1  score: 8.4 bits;  conditional E-value: 0.0024
   EF-hand_2  52 sdefdrllsvsqledvLldlysale........kkksslgqvkvevcvdllln.wLlnvyDrkrkgkirvlsfkvaLalL 122
                   + + +++v++l + L++l    +        ++ +  ++++++v+++l+ +  +l  +Dr+ +g++ v ++k aL+ L
  KOO20834.1  74 DRNESGSIDVTELRRGLHTLGMDSHsaqasaiiERYTRDQTIDIKVFTTLVKDiHMLLTFDRDGSGTLDVDELKEALVQL 153
                 3334556777777777777765544677788876677777788********98458899*****************9977 PP

  == domain 2  score: 4.9 bits;  conditional E-value: 0.03
   EF-hand_2  94 llnwLlnvyDrkrkgkirvlsfkva 118
                 + n +ln yD++++gki++ +f v 
  KOO20834.1 223 MTNAILNWYDNDESGKIELHEFAVL 247
                 46889**************999875 PP

  == domain 3  score: 1.1 bits;  conditional E-value: 0.42
   EF-hand_2 100 nvyDrkrkgkirvlsfkvaLa 120
                 + +D +r+g+i++ +++vaL 
  KOO20834.1 317 EQFDLDRSGSITAAELRVALG 337
                 56999**************96 PP

  == domain 4  score: -1.5 bits;  conditional E-value: 2.8
   EF-hand_2  98 LlnvyDrkrkgkirvlsfk 116
                 Lln yD + +g+i+  +f+
  KOO20834.1 351 LLNQYDLDSSGTIEFSEFR 369
                 7999999999999988875 PP

>> Caleosin  Caleosin related protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.5   0.0     0.031        30      13      48 ..      73     107 ..      65     130 .. 0.73
   2 ?    0.7   0.0      0.47   4.4e+02      13      37 ..     133     157 ..     121     166 .. 0.88
   3 ?    0.2   0.0      0.68   6.4e+02      98     120 ..     191     213 ..     172     233 .. 0.71
   4 ?   -0.2   0.0       0.9   8.5e+02      97     116 ..     252     271 ..     234     277 .. 0.87
   5 ?    1.2   0.0      0.33   3.2e+02       7      34 ..     287     314 ..     282     319 .. 0.83
   6 ?    0.1   0.0      0.73   6.9e+02      12      37 ..     318     343 ..     313     353 .. 0.85

  Alignments for each domain:
  == domain 1  score: 4.5 bits;  conditional E-value: 0.031
    Caleosin  13 fDrdkdGiiypldtyrgfralgfnvllsllaalvih 48 
                  Dr++ G i  ++  rg+++lg++   + ++ ++i+
  KOO20834.1  73 LDRNESGSIDVTELRRGLHTLGMDSHSAQAS-AIIE 107
                 59*********************98766554.4454 PP

  == domain 2  score: 0.7 bits;  conditional E-value: 0.47
    Caleosin  13 fDrdkdGiiypldtyrgfralgfnv 37 
                 fDrd  G++   +  +++++lg+nv
  KOO20834.1 133 FDRDGSGTLDVDELKEALVQLGMNV 157
                 9*********************998 PP

  == domain 3  score: 0.2 bits;  conditional E-value: 0.68
    Caleosin  98 ifskyakekkdaltlkevlellk 120
                 +f ky+k+ ++ + l+e+   l+
  KOO20834.1 191 TFMKYDKDGSGDIDLEEIRPALR 213
                 46666666666666666554443 PP

  == domain 4  score: -0.2 bits;  conditional E-value: 0.9
    Caleosin  97 eifskyakekkdaltlkevl 116
                 ++f+ y+k++++al ++e+ 
  KOO20834.1 252 SVFASYDKDHSGALDIHELR 271
                 589************99986 PP

  == domain 5  score: 1.2 bits;  conditional E-value: 0.33
    Caleosin   7 qqHvaFfDrdkdGiiypldtyrgfralg 34 
                 +q ++ +D + +G+i +l+  + +r+l+
  KOO20834.1 287 RQIIKAWDDNGNGTINLLEFAEIVRDLQ 314
                 566788***********99988888876 PP

  == domain 6  score: 0.1 bits;  conditional E-value: 0.73
    Caleosin  12 FfDrdkdGiiypldtyrgfralgfnv 37 
                  fD d+ G i+  +   ++ +lg nv
  KOO20834.1 318 QFDLDRSGSITAAELRVALGKLGKNV 343
                 59999999999999999999999886 PP

>> DUF3037  Protein of unknown function (DUF3037)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.2   0.00024      0.23      32     103 ..       3      91 ..       1     103 [. 0.80
   2 ?   -1.3   0.0         3   2.8e+03      48      84 ..     177     214 ..     125     226 .. 0.59
   3 ?   -1.1   0.0       2.7   2.5e+03      77     103 ..     311     337 ..     264     355 .. 0.61

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 0.00024
     DUF3037  32 vrleldeaRlralfpel............dlealeeelkaleeicegekaagpiak.....ldlaerfrwltaprstviqtsevhtglt 103
                 v+l++  +Rl+++ ++l             +++++eel+++e  + ++ka ++ a+     l+l++ f+ l ++ s++i ++e + gl 
  KOO20834.1   3 VALQKMDKRLEKMNDALeakadfyedikhGMQEMKEELQQIEVLAGQRKAKENVARissavLNLTDTFDSLDRNESGSIDVTELRRGLH 91 
                 55666668888888888888888888888899999999999999844444444444455789***********************9986 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 3
     DUF3037  48 ldlealeeelkaleeicegeka.agpiakldlaerfrw 84 
                 ldl ++ + +++l+  ++ +k+ +g+i  ++++  +r+
  KOO20834.1 177 LDLLEFTDLVRTLQTFMKYDKDgSGDIDLEEIRPALRR 214
                 25555555555555555555554555555555555555 PP

  == domain 3  score: -1.1 bits;  conditional E-value: 2.7
     DUF3037  77 dlaerfrwltaprstviqtsevhtglt 103
                 +  ++f+++  +rs++i + e +++l 
  KOO20834.1 311 RDLQVFEQFDLDRSGSITAAELRVALG 337
                 333667777778888888888777765 PP

>> DUF5640  Family of unknown function (DUF5640)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.1   0.0    0.0014       1.3       7      32 ..     120     145 ..     117     151 .. 0.85
   2 ?   -2.8   0.0       7.3   6.9e+03      21      32 ..     170     181 ..     168     192 .. 0.82
   3 ?   -0.2   0.0       1.1   1.1e+03      15      32 ..     190     207 ..     181     211 .. 0.80

  Alignments for each domain:
  == domain 1  score: 9.1 bits;  conditional E-value: 0.0014
                 EE--SSSS-EEEEE-SSS-EEEEEEE CS
     DUF5640   7 WstktedshktYkFdedGtgelelsk 32 
                 ++t   d+h++++Fd dG+g+l  ++
  KOO20834.1 120 FTTLVKDIHMLLTFDRDGSGTLDVDE 145
                 5677899*************998766 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 7.3
                 -SSS-EEEEEEE CS
     DUF5640  21 dedGtgelelsk 32 
                 d+dG+g+l l +
  KOO20834.1 170 DADGSGKLDLLE 181
                 799999998765 PP

  == domain 3  score: -0.2 bits;  conditional E-value: 1.1
                 -EEEEE-SSS-EEEEEEE CS
     DUF5640  15 hktYkFdedGtgelelsk 32 
                 ++  k+d+dG+g + l++
  KOO20834.1 190 QTFMKYDKDGSGDIDLEE 207
                 566789******999876 PP

>> DUF1798  Bacterial domain of unknown function (DUF1798)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.2   0.00018      0.17       7      51 ..       4      49 ..       1      69 [. 0.82

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 0.00018
                HHHHHHHHHHHHH.HS-----TTTTHHHHHHHHHHHHHHHHHHHHH CS
     DUF1798  7 lneeaeerfqevk.eegkeadFfkeVkpfadevkelldewkelale 51
                  +++ +r ++++   + +adF++++k   +e+ke+l++++ la +
  KOO20834.1  4 ALQKMDKRLEKMNdALEAKADFYEDIKHGMQEMKEELQQIEVLAGQ 49
                5688999999999788999*******************99987755 PP

>> CC2-LZ  Leucine zipper of domain CC2 of NEMO, NF-kappa-B essential modulator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   3.0    0.0002      0.19      15      60 ..       4      49 ..       1      52 [. 0.93

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 0.0002
      CC2-LZ 15 eieeLkaqlqaaeealaakqeeidelkeeikkkeeeletisvlkaQ 60
                 ++++ ++l++ ++al+ak +  +++k+ +++++eel++i+vl  Q
  KOO20834.1  4 ALQKMDKRLEKMNDALEAKADFYEDIKHGMQEMKEELQQIEVLAGQ 49
                578999*************************************988 PP

>> GrpE  GrpE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   1.5   0.00016      0.15      10      80 ..       8      78 ..       2     109 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.00016
                THHHHCCCCCCTTCHHHCTTSCCCCCCTTTTTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
        GrpE 10 eedeeeeleeeleelekevkelkekllrllaefenlrkrtekekeeakkfaiekfakdLLpvlDnleralk 80
                 ++++e+ +  le+  + ++++k  +++ ++e+++++  + ++k++     i++ + +L +++D+l+r  +
  KOO20834.1  8 MDKRLEKMNDALEAKADFYEDIKHGMQEMKEELQQIEVLAGQRKAKENVARISSAVLNLTDTFDSLDRNES 78
                4556666666677777778899*********************************************9876 PP

>> EF-hand_10  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.1       3.1   2.9e+03       4      16 ..      33      45 ..      30      49 .. 0.85
   2 ?    5.5   0.0     0.017        16       4      49 ..     143     188 ..     140     189 .. 0.90
   3 ?   -0.4   0.0       1.1   1.1e+03      27      45 ..     192     210 ..     190     215 .. 0.82
   4 ?   -1.3   0.0       2.2   2.1e+03      26      43 ..     253     270 ..     251     277 .. 0.85
   5 ?   -0.9   0.0       1.6   1.5e+03      17      45 ..     342     370 ..     327     375 .. 0.75

  Alignments for each domain:
  == domain 1  score: -1.8 bits;  conditional E-value: 3.1
  EF-hand_10  4 fkEvkrlLreiNi 16
                ++E+k+ L++i +
  KOO20834.1 33 MQEMKEELQQIEV 45
                689***9*99976 PP

  == domain 2  score: 5.5 bits;  conditional E-value: 0.017
  EF-hand_10   4 fkEvkrlLreiNievddeYAekLFkkcDkSksgrLegeEieeFykl 49 
                  +E+k+ L ++ ++v+d    k+ +  D   sg+L+  E+    + 
  KOO20834.1 143 VDELKEALVQLGMNVSDRNVAKIARAWDADGSGKLDLLEFTDLVRT 188
                 68**********************************9999876665 PP

  == domain 3  score: -0.4 bits;  conditional E-value: 1.1
  EF-hand_10  27 FkkcDkSksgrLegeEiee 45 
                 F k Dk  sg ++ eEi  
  KOO20834.1 192 FMKYDKDGSGDIDLEEIRP 210
                 8899************975 PP

  == domain 4  score: -1.3 bits;  conditional E-value: 2.2
  EF-hand_10  26 LFkkcDkSksgrLegeEi 43 
                 +F   Dk +sg L+ +E+
  KOO20834.1 253 VFASYDKDHSGALDIHEL 270
                 68889********99887 PP

  == domain 5  score: -0.9 bits;  conditional E-value: 1.6
  EF-hand_10  17 evddeYAekLFkkcDkSksgrLegeEiee 45 
                 +v+ + A+ L  + D   sg++e +E+ +
  KOO20834.1 342 NVSHHGAQDLLNQYDLDSSGTIEFSEFRK 370
                 67777788999999999999999999876 PP

>> BLI1  BLOC-1 interactor 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   1.3    0.0003      0.29      68     108 ..       9      50 ..       2      53 .. 0.75

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 0.0003
        BLI1  68 kkklkkl.eelekkveyyeklldeleefqdelevktkleknr 108
                 +k+l+k+ ++le k ++ye++ + ++e+++el+    l  +r
  KOO20834.1   9 DKRLEKMnDALEAKADFYEDIKHGMQEMKEELQQIEVLAGQR 50 
                 3456555378*********************98655555555 PP

>> DUF1664  Protein of unknown function (DUF1664)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   1.5   0.00082      0.77      62     101 ..       6      45 ..       1      77 [. 0.63
   2 ?   -0.8   0.0       1.6   1.5e+03      83     102 ..      77      96 ..      47     104 .. 0.47

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.00082
     DUF1664  62 rhLssridrvdkkldeqkeiskeikeevtevredlseige 101
                 +++ +r++++++ l++ ++  ++ik+ ++e++e+l++i+ 
  KOO20834.1   6 QKMDKRLEKMNDALEAKADFYEDIKHGMQEMKEELQQIEV 45 
                 5667777777777777777777777777777777777753 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 1.6
     DUF1664  83 keikeevtevredlseiged 102
                 ++ + +vte+r++l+++g d
  KOO20834.1  77 ESGSIDVTELRRGLHTLGMD 96 
                 22233555555555555555 PP

>> Dockerin_1  Dockerin type I domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.0   0.3      0.52   4.9e+02      23      55 ..     151     187 ..     134     190 .. 0.73
   2 ?   -2.4   0.0       6.2   5.8e+03      25      52 ..     219     246 ..     198     249 .. 0.66
   3 ?    5.7   0.1     0.018        17      14      57 ..     266     313 ..     263     314 .. 0.74
   4 ?    3.5   0.5     0.085        80       4      47 ..     295     329 ..     294     364 .. 0.67

  Alignments for each domain:
  == domain 1  score: 1.0 bits;  conditional E-value: 0.52
                 T....SSEBTTSCCCHGGGSTT-SSCESHHHHHHHHH CS
  Dockerin_1  23 n....qregqssssngkaaDvNgDGrvnalDallvin 55 
                      + ++++  +  +a D +g G+ + l ++ + +
  KOO20834.1 151 VqlgmNVSDRNVAKIARAWDADGSGKLDLLEFTDLVR 187
                 444444778888888999********99888876665 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 6.2
                 SEBTTSCCCHGGGSTT-SSCESHHHHHH CS
  Dockerin_1  25 regqssssngkaaDvNgDGrvnalDall 52 
                 +e++ ++   + +D ++ G++    +++
  KOO20834.1 219 AETKMTNAILNWYDNDESGKIELHEFAV 246
                 5566677777788888888887666665 PP

  == domain 3  score: 5.7 bits;  conditional E-value: 0.018
                 HHHHHHHHCT....SSEBTTSCCCHGGGSTT-SSCESHHHHHHHHHHH CS
  Dockerin_1  14 Dalliinyln....qregqssssngkaaDvNgDGrvnalDallvinyL 57 
                 D+  ++ +l     ++++++  +  ka D Ng+G++n l ++ + + L
  KOO20834.1 266 DIHELRPALAklglAASEDEVRQIIKAWDDNGNGTINLLEFAEIVRDL 313
                 5555555555566666777888889999*********99999877665 PP

  == domain 4  score: 3.5 bits;  conditional E-value: 0.085
                 TTSSSC-SHHHHHHHHHHCTSSEBTTSCCCHGGGSTT-SSCESH CS
  Dockerin_1   4 VNgDgkVnalDalliinylnqregqssssngkaaDvNgDGrvna 47 
                  Ng+g++n l ++ i + l+           + +D+++ G+++a
  KOO20834.1 295 DNGNGTINLLEFAEIVRDLQ---------VFEQFDLDRSGSITA 329
                 58888898888888888888.........333444444444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (541 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       870  (0.0485247); expected 358.6 (0.02)
Passed bias filter:                      683  (0.0380947); expected 358.6 (0.02)
Passed Vit filter:                        98  (0.005466); expected 17.9 (0.001)
Passed Fwd filter:                        19  (0.00105974); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              19  [number of targets reported over threshold]
# CPU time: 0.72u 0.31s 00:00:01.03 Elapsed: 00:00:00.48
# Mc/sec: 3366.94
//
Query:       KOO20835.1  [L=659]
Description: DNAj-like subfamily c member 3 precursor [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.1e-09   38.2   0.2    1.1e-07   31.9   0.0    3.4  3  DnaJ      DnaJ domain
    0.00047   20.0   4.5        3.2    8.0   0.0    5.5  5  TPR_7     Tetratricopeptide repeat
     0.0053   16.5  10.8        9.4    6.2   0.0    5.0  4  TPR_1     Tetratricopeptide repeat
     0.0059   17.1   0.4     0.0059   17.1   0.4    6.6  7  TPR_19    Tetratricopeptide repeat
  ------ inclusion threshold ------
        0.1   12.8   0.2        0.1   12.8   0.2    6.7  7  TPR_2     Tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> DnaJ  DnaJ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.6   0.0     0.086   3.1e+02      25      52 ..     391     414 ..     383     422 .. 0.68
   2 ?   -1.3   0.0      0.68   2.4e+03      39      56 ..     469     486 ..     463     487 .. 0.79
   3 !   31.9   0.0     3e-11   1.1e-07      17      54 ..     605     643 ..     583     648 .. 0.82

  Alignments for each domain:
  == domain 1  score: 1.6 bits;  conditional E-value: 0.086
                 HHHHSTTTSCCHHHHHHHHHHHHHHHHH CS
        DnaJ  25 alkyHPDknpkdpeaeekFkeineAyev 52 
                 +lky PD++    e + ++k++++  + 
  KOO20835.1 391 VLKYDPDQE----EVRTQYKQLKAVLQL 414
                 677888877....666666666666655 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 0.68
                 HHHHHHHHHHHHHHHTSH CS
        DnaJ  39 aeekFkeineAyevLsdp 56 
                   e+ +  ++Ay+ Ls+p
  KOO20835.1 469 HVEAMEDCQTAYSALSTP 486
                 557778889******986 PP

  == domain 3  score: 31.9 bits;  conditional E-value: 3e-11
                 HHHHHHHHHHHHSTTTSCCHH.HHHHHHHHHHHHHHHHT CS
        DnaJ  17 IkkaYrklalkyHPDknpkdp.eaeekFkeineAyevLs 54 
                 + k+Yrkla+++HPD+ ++ + +ae+k +e +eA evL 
  KOO20835.1 605 VIKQYRKLAKQWHPDRYKGLKaRAERKMRECSEAKEVLF 643
                 889**************99999***************96 PP

>> TPR_7  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.8   0.0     0.086   3.1e+02      11      26 ..      34      49 ..      30      55 .. 0.87
   2 ?    1.7   0.1      0.09   3.2e+02       8      28 ..     238     256 ..     237     263 .. 0.82
   3 ?   -2.6   0.0       2.2   7.8e+03      12      24 ..     301     313 ..     299     321 .. 0.78
   4 !    4.8   0.0    0.0096        34       4      34 ..     369     398 ..     366     401 .. 0.83
   5 !    8.0   0.0    0.0009       3.2       1      30 [.     500     529 ..     500     535 .. 0.83

  Alignments for each domain:
  == domain 1  score: 1.8 bits;  conditional E-value: 0.086
       TPR_7 11 rlGdyeeAielyeqsL 26
                ++G++++A+ ++ ++L
  KOO20835.1 34 KDGEHDQAAAHLIRAL 49
                78*********99944 PP

  == domain 2  score: 1.7 bits;  conditional E-value: 0.09
       TPR_7   8 lysrlGdyeeAielyeqsLal 28 
                 l +r G+++ A+++ e+  ++
  KOO20835.1 238 LLRRAGEHRSAASFREA--GV 256
                 67999*********998..55 PP

  == domain 3  score: -2.6 bits;  conditional E-value: 2.2
       TPR_7  12 lGdyeeAielyeq 24 
                   +++ A++ +e+
  KOO20835.1 301 TEQWQAALDALER 313
                 5678999888887 PP

  == domain 4  score: 4.8 bits;  conditional E-value: 0.0096
       TPR_7   4 nLarl.ysrlGdyeeAielyeqsLaltkdped 34 
                 +L+++   ++Gd ++A++++    +l +dp+ 
  KOO20835.1 369 ALGSAaALEQGDGKKALSFLAS--VLKYDPDQ 398
                 677776678*************..99999875 PP

  == domain 5  score: 8.0 bits;  conditional E-value: 0.0009
       TPR_7   1 aLlnLarlysrlGdyeeAielyeqsLaltk 30 
                 aL + a++++++++++eA+  ++++ +l +
  KOO20835.1 500 ALEARAVAHEADQNFDEAVADLRAASELSS 529
                 67788**************99999666655 PP

>> TPR_1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.8   1.8    0.0036        13       3      28 ..      24      49 ..      22      50 .. 0.94
   2 ?    1.4   0.1     0.091   3.3e+02      10      33 ..     374     397 ..     373     398 .. 0.90
   3 !    5.4   0.1     0.005        18       3      27 ..     455     479 ..     453     481 .. 0.83
   4 !    6.2   0.0    0.0026       9.4       6      30 ..     503     527 ..     499     530 .. 0.86

  Alignments for each domain:
  == domain 1  score: 5.8 bits;  conditional E-value: 0.0036
                HHHHHHHHHHHTT-HHHHHHHHHHHH CS
       TPR_1  3 alynlGnayfklgkydeAleyyekAL 28
                a++ +++ + k g++d+A ++  +AL
  KOO20835.1 24 AYKKKAAELAKDGEHDQAAAHLIRAL 49
                899*******************9998 PP

  == domain 2  score: 1.4 bits;  conditional E-value: 0.091
                 HHHHTT-HHHHHHHHHHHHHHSTT CS
       TPR_1  10 ayfklgkydeAleyyekALelnPn 33 
                 a +++g+ ++Al +   +L+ +P+
  KOO20835.1 374 AALEQGDGKKALSFLASVLKYDPD 397
                 66899*****************98 PP

  == domain 3  score: 5.4 bits;  conditional E-value: 0.005
                 HHHHHHHHHHHTT-HHHHHHHHHHH CS
       TPR_1   3 alynlGnayfklgkydeAleyyekA 27 
                 +l  l  a   ++k+ eA e+++ A
  KOO20835.1 455 VLLKLCRARSAMKKHVEAMEDCQTA 479
                 56667777889************98 PP

  == domain 4  score: 6.2 bits;  conditional E-value: 0.0026
                 HHHHHHHHTT-HHHHHHHHHHHHHH CS
       TPR_1   6 nlGnayfklgkydeAleyyekALel 30 
                  +++a+   +++deA+++ + A el
  KOO20835.1 503 ARAVAHEADQNFDEAVADLRAASEL 527
                 6999***************999776 PP

>> TPR_19  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.7   0.1      0.21   7.6e+02       2      18 ..      33      49 ..      28      67 .. 0.82
   2 ?   -5.9   7.1         5   1.8e+04      36      62 ..     107     133 ..      77     139 .. 0.65
   3 !   11.8   0.3   7.2e-05      0.26       5      55 ..     302     352 ..     299     359 .. 0.86
   4 !   17.1   0.4   1.6e-06    0.0059       1      45 [.     375     419 ..     375     441 .. 0.81
   5 ?   -1.1   0.1      0.76   2.7e+03      29      44 ..     450     465 ..     424     483 .. 0.64
   6 ?    1.5   0.3      0.12   4.3e+02      46      66 ..     502     523 ..     489     543 .. 0.66
   7 ?   -1.9   0.0       1.4   5.1e+03      31      48 ..     625     642 ..     611     644 .. 0.59

  Alignments for each domain:
  == domain 1  score: 0.7 bits;  conditional E-value: 0.21
      TPR_19  2 laegdyaeAlalleqal 18
                 ++g +++A+a+l +al
  KOO20835.1 33 AKDGEHDQAAAHLIRAL 49
                56788888888887765 PP

  == domain 2  score: -5.9 bits;  conditional E-value: 5
      TPR_19  36 lalgqldeAealLdalpeedpddarya 62 
                  ++ +++eA al +a  ++++d+a+++
  KOO20835.1 107 AEARRVEEALALQEARARAARDEADWS 133
                 356677777777777777777766666 PP

  == domain 3  score: 11.8 bits;  conditional E-value: 7.2e-05
      TPR_19   5 gdyaeAlalleqalqedpknaearllLAeallalgqldeAealLdalpeed 55 
                 ++ ++Al++le++  +   +a+++ll A+++  lg++  A+++ +++ e++
  KOO20835.1 302 EQWQAALDALERLPRDLRSSARLQLLEARCHQMLGRWGSAQRAAARVVEAT 352
                 578999999999989999999999988999999999999999999988876 PP

  == domain 4  score: 17.1 bits;  conditional E-value: 1.6e-06
      TPR_19   1 llaegdyaeAlalleqalqedpknaearllLAeallalgqldeAe 45 
                 +l++gd   Al++l+++l++dp+++e+r ++ ++   l   + Ae
  KOO20835.1 375 ALEQGDGKKALSFLASVLKYDPDQEEVRTQYKQLKAVLQLMASAE 419
                 69**************************99866665555555555 PP

  == domain 5  score: -1.1 bits;  conditional E-value: 0.76
      TPR_19  29 llLAeallalgqldeA 44 
                 ll A++ll+l +   A
  KOO20835.1 450 LLRAQVLLKLCRARSA 465
                 3346777776665555 PP

  == domain 6  score: 1.5 bits;  conditional E-value: 0.12
      TPR_19  46 alLdalpeedpd.daryasLlA 66 
                 ++ + + e+d++ d+++a+L+A
  KOO20835.1 502 EARAVAHEADQNfDEAVADLRA 523
                 5555555555554455555555 PP

  == domain 7  score: -1.9 bits;  conditional E-value: 1.4
      TPR_19  31 LAeallalgqldeAealL 48 
                  A+a  ++ +  eA+++L
  KOO20835.1 625 KARAERKMRECSEAKEVL 642
                 266666666666666665 PP

>> TPR_2  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.7   2.4     0.098   3.5e+02       3      28 ..      24      49 ..      22      50 .. 0.89
   2 ?   -3.0   0.4       3.1   1.1e+04      12      22 ..     107     117 ..     104     120 .. 0.67
   3 ?   -1.4   0.0         1   3.6e+03      14      26 ..     301     313 ..     299     314 .. 0.84
   4 ?    3.8   0.1     0.022        78       5      29 ..     326     350 ..     322     354 .. 0.85
   5 ?    4.0   0.0     0.018        63      10      33 ..     374     397 ..     372     398 .. 0.93
   6 ?    1.1   0.1      0.15   5.5e+02       2      28 ..     454     480 ..     453     483 .. 0.86
   7 ?   12.8   0.2   2.8e-05       0.1       2      30 ..     499     527 ..     498     530 .. 0.93

  Alignments for each domain:
  == domain 1  score: 1.7 bits;  conditional E-value: 0.098
       TPR_2  3 alynlGlayyklgdyeeAleafekAl 28
                a+   +  ++k g++++A++++ +Al
  KOO20835.1 24 AYKKKAAELAKDGEHDQAAAHLIRAL 49
                78889999*************99998 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 3.1
       TPR_2  12 yklgdyeeAle 22 
                 +++ + eeAl+
  KOO20835.1 107 AEARRVEEALA 117
                 56677788876 PP

  == domain 3  score: -1.4 bits;  conditional E-value: 1
       TPR_2  14 lgdyeeAleafek 26 
                   +++ Al+a+e+
  KOO20835.1 301 TEQWQAALDALER 313
                 67999****9998 PP

  == domain 4  score: 3.8 bits;  conditional E-value: 0.022
       TPR_2   5 ynlGlayyklgdyeeAleafekAle 29 
                    ++++  lg++  A +a  +++e
  KOO20835.1 326 LLEARCHQMLGRWGSAQRAAARVVE 350
                 6789*************99988876 PP

  == domain 5  score: 4.0 bits;  conditional E-value: 0.018
       TPR_2  10 ayyklgdyeeAleafekAleldPn 33 
                 a++++gd ++Al ++  +l++dP+
  KOO20835.1 374 AALEQGDGKKALSFLASVLKYDPD 397
                 7899*******************7 PP

  == domain 6  score: 1.1 bits;  conditional E-value: 0.15
       TPR_2   2 ealynlGlayyklgdyeeAleafekAl 28 
                 ++l  l +a  +++++ eA e+++ A 
  KOO20835.1 454 QVLLKLCRARSAMKKHVEAMEDCQTAY 480
                 6778888999999**********9996 PP

  == domain 7  score: 12.8 bits;  conditional E-value: 2.8e-05
       TPR_2   2 ealynlGlayyklgdyeeAleafekAlel 30 
                 eal +++ a+++ ++++eA++++++A el
  KOO20835.1 499 EALEARAVAHEADQNFDEAVADLRAASEL 527
                 7999**********************888 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (659 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1355  (0.0755759); expected 358.6 (0.02)
Passed bias filter:                      660  (0.0368119); expected 358.6 (0.02)
Passed Vit filter:                        55  (0.00306766); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.69u 0.25s 00:00:00.94 Elapsed: 00:00:00.42
# Mc/sec: 4710.64
//
Query:       KOO20836.1  [L=650]
Description: histone deacetylase 6 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.4e-80  269.8   0.2    4.6e-80  269.4   0.2    1.2  1  Hist_deacetyl  Histone deacetylase domain


Domain annotation for each model (and alignments):
>> Hist_deacetyl  Histone deacetylase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  269.4   0.2   2.6e-84   4.6e-80       1     306 [.      76     376 ..      76     377 .. 0.90

  Alignments for each domain:
  == domain 1  score: 269.4 bits;  conditional E-value: 2.6e-84
                    SCCGTHHHHHHHHHHHHT.THHHHCCE.EE-----HHHHTTTS-HHHHHHHHCHHHHCHHT.TTHCCHHHCCTSTSSSSSTHCTTTCCHHHHHHHH CS
                    xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Hist_deacetyl   1 hpenpkRlsaileslaesvglldelelliqpseatkeellkvHskeYlelleslsnelkkkeeakekeleeiasklldddtpvspktlkaallavg 96 
                    hpe+p+R+sa+ ++l ++ gl  +++  + ++ +t++e++ vH++++ +++e +     + +   ++         ++++ ++++++++aa+ a+g
     KOO20836.1  76 HPERPERISAVRDELLRT-GLAVHCQ-SVPARLVTRAEVELVHERHHWDKIEWAIGAELAAR---DAFIG------QHESLYINSHSMDAARCAAG 160
                    8****************8.8776655.69***********************8665543333...33332......35679*************** PP

                    HHHHHHHHHHTTSSSEEEETTSS--TT-BTTB-BTTBSS-HHHHHHHHHHHCC-SS-EEEEE-SSS--HHHHHHCTT-TTEEEEEEEE-C.CTSTT CS
                    xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxx RF
  Hist_deacetyl  97 avleavdavlsgsvkaafvlvrPpgHHakaseasGFClvNnvaiaikylqakhelkrvailDvDvHhGnGteeafysdpdvltlSiHrye.gifyP 191
                    av+e  +av+sg+++++++lvrPpgHHa+a  a+GFC++N vaia+ +++++ +++rv+++D+D+HhGnG +++f+sdp+vl++S+Hrye g ++P
     KOO20836.1 161 AVIEVTKAVVSGRARNGMALVRPPGHHAEAHMAMGFCVLNTVAIAAAHAREHLGCRRVLVVDWDIHHGNGIQRIFESDPSVLYFSVHRYErGAYFP 256
                    *****************************************************************************************648899* PP

                    ...SS--TT---SGGGTTSEEEEEE-TT....-BHHHHHHHHHHCHHHHHCCH--SEEEEEE-STTBTTSTT-S-BB-HHHHHHHHHHHCCCHGS- CS
                    ...xxxxxxxxxxxxxxxxxxxxxxxxx....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Hist_deacetyl 192 ...gtgaledlgegkgkgfnlnvpleeg....tgdeeylkvfeeilrpvleefkPdlilvsaGfDalkgdplgelnlsvegykeltkklaeladkv 280
                          a +  g g+g+g+++nv ++++     gd+eyl++++e+l+p+++ef+Pdl+lv aGfDa++gdplg +++s+ gy++lt++l++la+  
     KOO20836.1 257 ssvADAAPQAAGVGAGRGTSVNVGWNTKgharPGDAEYLACWSEVLMPIAREFEPDLVLVAAGFDAAEGDPLGMCHVSPAGYAQLTRQLMSLAN-- 350
                    763334446669***********9999545559************************************************************9.. PP

                    G.EEEEE-S---HHHHHHHHHHHHHH CS
                    xxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Hist_deacetyl 281 kkvvllleGGYnlealaravtavlsa 306
                    +k+vl leGGY+l+a+a +++a+++ 
     KOO20836.1 351 GKIVLALEGGYSLSATAVSAAACMES 376
                    59***********9999999888765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (650 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       441  (0.024597); expected 358.6 (0.02)
Passed bias filter:                      272  (0.015171); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.56u 0.27s 00:00:00.83 Elapsed: 00:00:00.44
# Mc/sec: 4420.63
//
Query:       KOO20837.1  [L=911]
Description: achain structural determinant protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    5.7e-16   58.7   0.2    1.4e-15   57.5   0.2    1.6  1  EF-hand_7       EF-hand domain pair
    5.3e-15   53.8   3.7    5.4e-07   28.7   0.4    2.6  2  EF-hand_1       EF hand
    1.5e-13   50.9   0.7    1.9e-08   34.7   0.1    2.1  2  Ank_4           Ankyrin repeats (many copies)
    1.5e-11   44.7   1.1    1.2e-10   41.8   1.5    2.3  2  Ank_2           Ankyrin repeats (3 copies)
    5.3e-11   41.5   0.3    2.6e-06   26.9   0.1    2.9  2  EF-hand_6       EF-hand domain
      8e-11   40.9   3.2    1.1e-06   27.9   0.9    2.5  2  EF-hand_5       EF hand
    1.1e-10   41.6   1.5    1.5e-07   31.6   0.3    2.8  2  Ank_5           Ankyrin repeats (many copies)
    1.5e-09   37.3   0.3    3.3e-05   23.9   0.1    3.3  2  Ank_3           Ankyrin repeat
      3e-09   36.9   1.9    6.1e-08   32.8   1.3    2.8  2  Ank             Ankyrin repeat
    8.8e-08   31.9   3.6    5.6e-07   29.3   1.1    2.5  2  EF-hand_8       EF-hand domain pair
    0.00013   21.4   0.0    0.00027   20.3   0.0    1.5  1  ART             NAD:arginine ADP-ribosyltransferase
    0.00023   21.4   0.0     0.0005   20.3   0.0    1.5  1  EF-hand_9       EF-hand domain
    0.00031   20.2   0.0    0.00096   18.5   0.0    1.8  1  ADPrib_exo_Tox  ADP-ribosyltransferase exoenzyme


Domain annotation for each model (and alignments):
>> EF-hand_7  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.5   0.2     1e-18   1.4e-15       5      70 ..       4      64 ..       2      65 .. 0.96

  Alignments for each domain:
  == domain 1  score: 57.5 bits;  conditional E-value: 1e-18
   EF-hand_7  5 keaFkelDtdgdgyldkeellrllrkifqgagegsklsdeelellfkefDtdkdGvisfdEFlkly 70
                ++aF  +D+dgdg+++ +el++ll       g+gs+lsdee+e+++ e+D +++G++ fdEF+++ 
  KOO20837.1  4 QDAFAIFDSDGDGKISIDELKELLNM-----GTGSVLSDEEVEAIIAEVDVNGNGTLEFDEFEQMW 64
                789**********************9.....********************************985 PP

>> EF-hand_1  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.7   0.4   3.9e-10   5.4e-07       3      27 ..       4      28 ..       2      30 .. 0.92
   2 !   25.6   0.2   3.9e-09   5.4e-06       1      28 [.      39      66 ..      39      67 .. 0.94

  Alignments for each domain:
  == domain 1  score: 28.7 bits;  conditional E-value: 3.9e-10
                HHHHHHHTTTSSSEEEHHHHHHHHH CS
   EF-hand_1  3 keiFrefDkDgdGkIdfeEfkellk 27
                +++F++fD DgdGkI+++E+kell+
  KOO20837.1  4 QDAFAIFDSDGDGKISIDELKELLN 28
                79********************997 PP

  == domain 2  score: 25.6 bits;  conditional E-value: 3.9e-09
                HHHHHHHHHTTTSSSEEEHHHHHHHHHH CS
   EF-hand_1  1 elkeiFrefDkDgdGkIdfeEfkellkk 28
                e++ i++e+D++g+G+++f+Ef +++k 
  KOO20837.1 39 EVEAIIAEVDVNGNGTLEFDEFEQMWKL 66
                7899*********************985 PP

>> Ank_4  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.7   0.1   1.4e-11   1.9e-08       3      55 .]     749     806 ..     747     806 .. 0.89
   2 !   23.7   0.1   3.8e-08   5.2e-05       2      37 ..     787     821 ..     786     826 .. 0.87

  Alignments for each domain:
  == domain 1  score: 34.7 bits;  conditional E-value: 1.4e-11
       Ank_4   3 taLhyaaisgrlelvrlLlekgadinaqdnrs.....GetalhiAakrgnveilklLl 55 
                 ++L +aa++++l +++ L++kg ++n + +++     G t+lh Aa +g++++++lLl
  KOO20837.1 749 QPLLWAAKDNNLIVAEMLIAKGHSVNTREPIQdkgnsGYTPLHWAAHKGHLHMVELLL 806
                 799*************************66444444499******************8 PP

  == domain 2  score: 23.7 bits;  conditional E-value: 3.8e-08
       Ank_4   2 ltaLhyaaisgrlelvrlLlekgadinaqdnrsGet 37 
                 +t+Lh+aa++g+l +v+lLl++ga+  a  ++  +t
  KOO20837.1 787 YTPLHWAAHKGHLHMVELLLSHGANAAAL-DKHNNT 821
                 79**********************98887.765555 PP

>> Ank_2  Ankyrin repeats (3 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.3   0.0    0.0052       7.1      51      82 ..     745     776 ..     731     777 .. 0.83
   2 !   41.8   1.5   8.7e-14   1.2e-10       1      72 [.     751     838 ..     751     845 .. 0.84

  Alignments for each domain:
  == domain 1  score: 7.3 bits;  conditional E-value: 0.0052
       Ank_2  51 ndgrtpLhyAarsghleivklLlekgadinlk 82 
                 +d + pL +Aa+ ++l ++++L+ kg ++n++
  KOO20837.1 745 SDSWQPLLWAAKDNNLIVAEMLIAKGHSVNTR 776
                 56799999999999999999999999999876 PP

  == domain 2  score: 41.8 bits;  conditional E-value: 8.7e-14
       Ank_2   1 LhlAakngnlelvklLl.egadpn.....k....ngktaLhyAakngnleivklLleh......adndgrtpLhyAarsghleivklL 72 
                 L +Aak++nl + + L+ +g+ +n     +     g t+Lh+Aa++g+l++v+lLl+h      +d++++tp ++A ++g  e+v lL
  KOO20837.1 751 LLWAAKDNNLIVAEMLIaKGHSVNtrepiQdkgnSGYTPLHWAAHKGHLHMVELLLSHganaaaLDKHNNTPKMLAEKKGEKELVALL 838
                 6799**98886777777999888876655156889**********************99777666699*********99******977 PP

>> EF-hand_6  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.9   0.1   1.9e-09   2.6e-06       3      28 ..       4      29 ..       2      36 .. 0.91
   2 !   11.6   0.0   0.00015       0.2       8      27 ..      46      65 ..      39      70 .. 0.85

  Alignments for each domain:
  == domain 1  score: 26.9 bits;  conditional E-value: 1.9e-09
   EF-hand_6  3 reaFklfDkdgdGkidaeElrkalrk 28
                ++aF +fD dgdGki+++El+ +l++
  KOO20837.1  4 QDAFAIFDSDGDGKISIDELKELLNM 29
                79*********************995 PP

  == domain 2  score: 11.6 bits;  conditional E-value: 0.00015
   EF-hand_6  8 lfDkdgdGkidaeElrkalr 27
                + D++g+G++ ++E+ ++ +
  KOO20837.1 46 EVDVNGNGTLEFDEFEQMWK 65
                67**************9977 PP

>> EF-hand_5  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.9   0.9   7.7e-10   1.1e-06       2      25 .]       4      27 ..       3      27 .. 0.93
   2 !   12.8   0.1   4.6e-05     0.064       6      24 ..      45      63 ..      40      64 .. 0.87

  Alignments for each domain:
  == domain 1  score: 27.9 bits;  conditional E-value: 7.7e-10
                HHHHHHH-SS-SSCE-HHHHHHHH CS
   EF-hand_5  2 kdtFqaiDlNgDGkIskeELktlv 25
                +d+F  +D +gDGkIs++ELk+l+
  KOO20837.1  4 QDAFAIFDSDGDGKISIDELKELL 27
                688******************985 PP

  == domain 2  score: 12.8 bits;  conditional E-value: 4.6e-05
                HHH-SS-SSCE-HHHHHHH CS
   EF-hand_5  6 qaiDlNgDGkIskeELktl 24
                 ++D+Ng G++ ++E++++
  KOO20837.1 45 AEVDVNGNGTLEFDEFEQM 63
                579*************997 PP

>> Ank_5  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.1   0.0    0.0025       3.4      18      45 ..     749     776 ..     737     778 .. 0.80
   2 !   31.6   0.3   1.1e-10   1.5e-07      11      52 ..     781     822 ..     777     823 .. 0.94

  Alignments for each domain:
  == domain 1  score: 8.1 bits;  conditional E-value: 0.0025
       Ank_5  18 tpLhvAakygaadvvrlLlargadlnlt 45 
                  pL +Aak +++ v+++L+a g + n++
  KOO20837.1 749 QPLLWAAKDNNLIVAEMLIAKGHSVNTR 776
                 6999***************888777766 PP

  == domain 2  score: 31.6 bits;  conditional E-value: 1.1e-10
       Ank_5  11 rldgggntpLhvAakygaadvvrlLlargadlnltdsrGlta 52 
                 ++ + g+tpLh+Aa++g++ +v+lLl +ga++ + d++++t+
  KOO20837.1 781 DKGNSGYTPLHWAAHKGHLHMVELLLSHGANAAALDKHNNTP 822
                 66789************************************8 PP

>> Ank_3  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.0   0.0   0.00085       1.2       3      30 ..     748     774 ..     746     775 .. 0.89
   2 !   23.9   0.1   2.4e-08   3.3e-05       2      29 ..     786     812 ..     785     814 .. 0.93

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.00085
       Ank_3   3 etpLhlAarsgnleivkfLlenkgadvn 30 
                 + pL +Aa+ +nl ++++L+  kg  vn
  KOO20837.1 748 WQPLLWAAKDNNLIVAEMLIA-KGHSVN 774
                 569******************.888877 PP

  == domain 2  score: 23.9 bits;  conditional E-value: 2.4e-08
       Ank_3   2 GetpLhlAarsgnleivkfLlenkgadv 29 
                 G+tpLh+Aa+ g+l +v++Ll  +ga+ 
  KOO20837.1 786 GYTPLHWAAHKGHLHMVELLLS-HGANA 812
                 9*********************.89986 PP

>> Ank  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.2   0.0      0.42   5.8e+02       5      29 ..     750     775 ..     748     778 .. 0.72
   2 !   32.8   1.3   4.4e-11   6.1e-08       2      32 .]     786     817 ..     785     820 .. 0.91

  Alignments for each domain:
  == domain 1  score: 1.2 bits;  conditional E-value: 0.42
                 HHHHHHHHTTHHHHHHHH.TTTSTTC CS
         Ank   5 PLHlAatngkkriiklLL.hGAnlna 29 
                 PL +Aa  +++ ++++L+ +G ++n 
  KOO20837.1 750 PLLWAAKDNNLIVAEMLIaKGHSVNT 775
                 88899954445566789988988885 PP

  == domain 2  score: 32.8 bits;  conditional E-value: 4.4e-11
                 SBBHHHHHHHHTTHHHHHHHH.TTTSTTCBTT CS
         Ank   2 GnTPLHlAatngkkriiklLL.hGAnlnaldn 32 
                 G+TPLH+Aa+ g++++++lLL hGAn +ald+
  KOO20837.1 786 GYTPLHWAAHKGHLHMVELLLsHGANAAALDK 817
                 9*************************777764 PP

>> EF-hand_8  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.3   0.3   8.4e-05      0.12      29      53 ..       4      28 ..       3      30 .. 0.87
   2 !   29.3   1.1   4.1e-10   5.6e-07       2      53 ..      15      65 ..      14      66 .. 0.88

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 8.4e-05
   EF-hand_8 29 dilfrefDtdgdGkisfeEFcvlle 53
                ++ f  fD dgdGkis +E  +ll 
  KOO20837.1  4 QDAFAIFDSDGDGKISIDELKELLN 28
                567889*************999986 PP

  == domain 2  score: 29.3 bits;  conditional E-value: 4.1e-10
   EF-hand_8  2 kgkItreelrrilrilglkk..glseeevdilfrefDtdgdGkisfeEFcvlle 53
                +gkI+ +el++ l++        ls+eev++++ e+D +g+G++ f+EF ++++
  KOO20837.1 15 DGKISIDELKELLNMG---TgsVLSDEEVEAIIAEVDVNGNGTLEFDEFEQMWK 65
                8**********88664...2446**************************99997 PP

>> ART  NAD:arginine ADP-ribosyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.3   0.0   1.9e-07   0.00027      63     197 ..     319     473 ..     297     489 .. 0.78

  Alignments for each domain:
  == domain 1  score: 20.3 bits;  conditional E-value: 1.9e-07
         ART  63 dehgiAllaYtssselyrelneavreaGrsreeyl........snfdfkalhfyLtraLqlLrkdsqrcsqvyRgvk....glrfs.rakkgksvRfg. 147
                  e+ iA  +Yt+   +y + n+ +r   +s + yl        +++d+ +   +  +   +L+k   ++ +v+Rg+k      +f  + +    vR g 
  KOO20837.1 319 VEELIAGRLYTGP--MYMKYNAVLRA--KSGNPYLqqqcrilcKENDYPTSIHATNSCVLKLSK-LTKAGKVWRGIKdgtlPKEFWvPNEM--GVRGGi 410
                 5778899999998..******99995..666555511111122679*****9***********9.99999*******96553344403333..599886 PP

         ART 148 ..qFtssslkkkvae........efgqdtllsiktcl...gvpIkefskfpsedevLIppfev 197
                    F s+ ++kk+a           +  t+++++  +   g+++  +s++p+e+evL+pp++ 
  KOO20837.1 411 eyGFSSTTTDKKQALqyashgckDGDAMTIFEMQMGMvdrGADLTWLSQYPHEREVLLPPLTG 473
                 567**********9878888886677889****98765669*******************986 PP

>> EF-hand_9  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.3   0.0   3.7e-07    0.0005       3      60 ..       6      62 ..       4      65 .. 0.95

  Alignments for each domain:
  == domain 1  score: 20.3 bits;  conditional E-value: 3.7e-07
   EF-hand_9  3 vFevcDtqktGrVpvsrlidyLravtaqdpeeseLeelakelDPdgedasvdldtflr 60
                 F ++D +  G++ + +l+++L   t+   ++ e+e   +e+D +g+ +++++d f +
  KOO20837.1  6 AFAIFDSDGDGKISIDELKELLNMGTGSVLSDEEVEAIIAEVDVNGN-GTLEFDEFEQ 62
                59*********************************************.********86 PP

>> ADPrib_exo_Tox  ADP-ribosyltransferase exoenzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.5   0.0     7e-07   0.00096      25     162 ..     326     469 ..     310     475 .. 0.81

  Alignments for each domain:
  == domain 1  score: 18.5 bits;  conditional E-value: 7e-07
                     HHHCCTTHHHHHHHHHCTTTSGGGS-S.CHHHHH......HHHHHHHCCT-.B-SS-EEEEEEE-GGGG-HHHHTT-HHHHHHHHHHHTT-EEEE CS
  ADPrib_exo_Tox  25 reYtgsgysdINnyLrqnkgerndldk.selekk......iknldsaleks.ripeniivYRrvdeaelgleldskneekvsefeakvkgkvfke 111
                     r Ytg  y + N  Lr + g+ + +++   l k+      i+  +s + k  ++++  +v+R+ +  +l +e+ ++ne+ v         +   e
      KOO20837.1 326 RLYTGPMYMKYNAVLRAKSGNPYLQQQcRILCKEndyptsIHATNSCVLKLsKLTKAGKVWRGIKDGTLPKEFWVPNEMGV---------RGGIE 411
                     789999*********9999999977776666666888888999999988888***********988888666555555554.........5678* PP

                     SS-EEEESSSS.SCCCTTT.......SEEEEEEE-TTSBEEE-CCCSSSGCG-EEEE- CS
  ADPrib_exo_Tox 112 rgyvSTslvkdtaasfggr.......eilleltvpkgsegayisplslypgeaEvLlp 162
                     +g++ST+  k++a +++           ++e++    + ga++  ls+yp e EvLlp
      KOO20837.1 412 YGFSSTTTDKKQALQYASHgckdgdaMTIFEMQMGMVDRGADLTWLSQYPHEREVLLP 469
                     ***********55444444444676778899999999********************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (911 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       428  (0.0238719); expected 358.6 (0.02)
Passed bias filter:                      407  (0.0227007); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                        13  (0.000725082); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 0.66u 0.26s 00:00:00.92 Elapsed: 00:00:00.41
# Mc/sec: 6723.99
//
Query:       KOO20838.1  [L=503]
Description: DNAj protein-like protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.7e-36  124.4   0.1    1.2e-29  103.3   0.1    2.2  2  DnaJ_C           DnaJ C terminal domain
    7.2e-22   77.3   0.4    1.3e-21   76.4   0.4    1.5  1  DnaJ             DnaJ domain
    9.6e-08   32.3   7.2    9.6e-08   32.3   7.2    2.2  2  DnaJ_CXXCXGXG    DnaJ central domain
  ------ inclusion threshold ------
        5.6    7.4   6.3       0.92    9.9   1.0    2.5  2  Lar_restr_allev  Restriction alleviation protein Lar


Domain annotation for each model (and alignments):
>> DnaJ_C  DnaJ C terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  103.3   0.1   2.8e-33   1.2e-29       2     121 ..     132     299 ..     131     301 .. 0.95
   2 !   19.1   0.0   2.4e-07    0.0011     115     148 .]     396     430 ..     360     430 .. 0.79

  Alignments for each domain:
  == domain 1  score: 103.3 bits;  conditional E-value: 2.8e-33
                 EEEEEE-HHHHHH-.EEE.EEEE......................................................TEEEEEE-TT--TT-EEEETT- CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxx...............................................xxxxxxxxxxxxxxxxxxxxxxxxxx RF
      DnaJ_C   2 eveleisleelykGktkkikikrnvi...............................................kkekktlevkipaGikdgqkirlege 53 
                  ++l+++l++++kG +++++++r+vi                                               +k+++tlev+ip+G +dg+k+ ++++
  KOO20838.1 132 VHPLKVTLDQIMKGSSRTLRLTRKVIdkqkgveqcsscggrgakiqtirmgpmiqqvqktcdacggqgmmyrqEKRQETLEVHIPKGAPDGHKVHFSEK 230
                 689********************************************************************8766667********************* PP

                 SSSS...S---EEEEEEE---SS-EEETTEEEEEEEEEHHHHHHTEEEEEE-SS-EEEEEE--TT-EEE CS
                 xxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
      DnaJ_C  54 Gdeeg.gepGDlivtikvkphpvFkrkgndlyveveislaeallGgklevptldgkvklkitqpgevlr 121
                 +de + ge+GD++++++++php Fkrkg+dl++e eisl+eal+G  +++ tldg++ l  t+pgev++
  KOO20838.1 231 ADEIPdGEAGDVVFVLQEQPHPEFKRKGDDLFIEREISLSEALCGFAMDLTTLDGRKLLIKTEPGEVIK 299
                 **9999****************************9*********************9994499999875 PP

  == domain 2  score: 19.1 bits;  conditional E-value: 2.4e-07
                 -TT-.EEEETT-S-EET...TEE--EEEEEEEE-- CS
                 xxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
      DnaJ_C 115 qpge.vlrikgkGmpklkkpgkrGdlyvevkvefP 148
                 +  + ++ +kg+G+p+lk p + G+l++++++efP
  KOO20838.1 396 KDTRmMMAVKGEGLPRLKAPFESGNLFIKFTIEFP 430
                 44443789**************************9 PP

>> DnaJ  DnaJ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   76.4   0.4     3e-25   1.3e-21       2      63 .]      34      91 ..      33      91 .. 0.97

  Alignments for each domain:
  == domain 1  score: 76.4 bits;  conditional E-value: 3e-25
                HHHHHTSSTTG-HHHHHHHHHHHHHHHSTTTSCCHHHHHHHHHHHHHHHHHHTSHHHHHHHH CS
        DnaJ  2 yYeiLgvskdasedeIkkaYrklalkyHPDknpkdpeaeekFkeineAyevLsdpekRkqYD 63
                +Y++Lgv+k+as+d+IkkaYrkla+k HPDk        e+Fkei++A+++L d+ kR++YD
  KOO20838.1 34 LYDVLGVEKNASSDQIKKAYRKLAVKNHPDKG----GDVEAFKEIQKAFDILGDDAKRERYD 91
                8*******************************....7779*********************9 PP

>> DnaJ_CXXCXGXG  DnaJ central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.3   7.2   2.1e-11   9.6e-08      12      57 ..     160     205 ..     153     209 .. 0.81
   2 ?   -1.5   1.1      0.73   3.3e+03       5      21 ..     344     360 ..     328     380 .. 0.56

  Alignments for each domain:
  == domain 1  score: 32.3 bits;  conditional E-value: 2.1e-11
  DnaJ_CXXCXGXG  12 gk.kktCktCkGsG.vvreeqktlgpfvqqsqstCpeCeGtGkvikek 57 
                    +k +++C++C+G+G ++++ +  +gp++qq+q+tC++C+G+G +++++
     KOO20838.1 160 QKgVEQCSSCGGRGaKIQTIR--MGPMIQQVQKTCDACGGQGMMYRQE 205
                    334899********4444444..99******************99776 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 0.73
  DnaJ_CXXCXGXG   5 kGsgakkgkkktCktCk 21 
                      +g+ kgk   C  C+
     KOO20838.1 344 VSKGQLKGKGIGCFVCR 360
                    33333333333444443 PP

>> Lar_restr_allev  Restriction alleviation protein Lar
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   1.0   0.00021      0.92       4      50 ..     164     210 ..     161     217 .. 0.77
   2 ?   -2.2   0.4       1.3   5.6e+03      23      33 ..     352     361 ..     323     380 .. 0.56

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.00021
  Lar_restr_allev   4 kpCPfCggravlersqrvvaeigq.cvyCadCgastpwfkiaedeaea 50 
                      + C  Cggr+ ++++ r    i+q + +C+ Cg  + ++++ e+++e+
       KOO20838.1 164 EQCSSCGGRGAKIQTIRMGPMIQQvQKTCDACGG-QGMMYRQEKRQET 210
                      6799999999999999999988888889999999.5556665555554 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 1.3
  Lar_restr_allev  23 aeigqcvyCad 33 
                      ++ig c+ C +
       KOO20838.1 352 KGIG-CFVCRN 361
                      3222.666644 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (503 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       595  (0.0331865); expected 358.6 (0.02)
Passed bias filter:                      472  (0.0263261); expected 358.6 (0.02)
Passed Vit filter:                        53  (0.0029561); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.52u 0.25s 00:00:00.77 Elapsed: 00:00:00.40
# Mc/sec: 3759.36
//
Query:       KOO20839.1  [L=1146]
Description: ubiquitin-protein cullin 4 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
   2.6e-194  647.4   0.9   3.2e-194  647.0   0.9    1.1  1  Cullin        Cullin family
    1.2e-38  131.3   0.0    3.3e-38  129.9   0.0    1.8  1  Sod_Fe_C      Iron/manganese superoxide dismutases, C-termina
    2.1e-34  118.5   0.1      7e-34  116.8   0.0    1.8  2  Gar1          Gar1/Naf1 RNA binding region
    5.6e-24   84.4   1.1    1.3e-23   83.2   1.1    1.7  1  Sod_Fe_N      Iron/manganese superoxide dismutases, alpha-hai
    6.4e-24   83.8   0.2    1.6e-23   82.5   0.2    1.7  1  Cullin_Nedd8  Cullin protein neddylation domain
  ------ inclusion threshold ------
      0.041   13.7   0.6        0.1   12.5   0.6    1.6  1  KCNQ_channel  KCNQ voltage-gated potassium channel


Domain annotation for each model (and alignments):
>> Cullin  Cullin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  647.0   0.9  1.1e-197  3.2e-194       1     618 []     443    1047 ..     443    1047 .. 0.96

  Alignments for each domain:
  == domain 1  score: 647.0 bits;  conditional E-value: 1.1e-197
      Cullin    1 WekleeaiqeilkknvsklsfeelYravynlvlskekkqgekLydklkelieehlkellkell.keesdeelLkalkkeWedhktsmkmirdifmyl 96  
                  W++l++a+q++++k +  +s+eelYrav++++l   ++ ++ +yd+l+e +e+h+++ l+ ll ++ +   +L+ ++  W dh+ +m ++r+if+yl
  KOO20839.1  443 WARLQAAVQAVHAKCAVGHSLEELYRAVEDMCL---QNLAAVVYDRLREECEQHVASRLDMLLgQTPDTLAFLSLVQATWADHCDQMLTLRSIFLYL 536 
                  9********************************...889********************998844445555************************** PP

      Cullin   97 drvyvk..klpsvydlglelfrdhvf.riklkdrlieallkliekeRegevidrsllksviemlvelgedsedkkvYeeeFekafleateefYraea 190 
                  dr+ v     +s++d+gl++fr+h+  r ++  + +++ll+lie eR+g++++r+ll+s+++ml++l        +Y e Fe +fl +t++fY aea
  KOO20839.1  537 DRTHVMqtANKSLWDMGLTIFRSHLGrRPEVARKTVQGLLTLIEHERTGDQVERMLLHSLLRMLHDL-------GMYVELFEVHFLRTTRDFYVAEA 626 
                  **986557899***************779999***********************************.......59********************* PP

      Cullin  191 eellaensvaseYlkkaeerleeEeervekyldsstkkkllevleeelikkhleelleeelkklledekledLkrlykllsrvdgleeLrkaleeyi 287 
                  ++ l  + ++++Yl+++ +rl++Ee+rv +yl+ st+k+ll+++ +el+++h+++++e+++++l+e+ +++dL+ +y+ll  vd l +Lr+a+  +i
  KOO20839.1  627 ATHLHVM-DVPSYLQHVRSRLAQEEQRVLHYLHLSTRKALLQTALQELLAAHVDAIIEKGFTTLMEQSRIDDLTCMYNLLGLVDALPRLRQAFAAFI 722 
                  *****87.888******************************************************999***************************** PP

      Cullin  288 keegkaivkdakekektedakkyveklLelkdkfdklvkeafnndkefekaldeafeefvnknkvnsksaellakYiDelLkkglkglseeeleekl 384 
                  k+ g+a+v+d      +e++  +v++lL++k+k+d+++ +af+++++f ++l+eafe f+n ++  +++ael+a+++D +L++g+kg seeelee+l
  KOO20839.1  723 KRVGTAMVSD------AERERGLVQELLQFKEKLDRILYDAFSSNEQFGHSLKEAFECFINVRQ--NRAAELVARFLDGKLRSGNKGTSEEELEEVL 811 
                  ********99......67899****************************************776..9****************************** PP

      Cullin  385 dkvlvlfryiedKDvFekyYkkhLakRLllgksasddaEksmiskLkeecGseftskLegMfkDiklskdlnkefkeylee....ekkkkkkvdlsv 477 
                  dk+++lfryi++KD+Fe++Ykk+L+kRLll+ksas daEksmiskLk+ecGs ft kLegMfkDi+ls+d++++fke+ +     + +++k+++lsv
  KOO20839.1  812 DKTMTLFRYIDGKDMFEAFYKKDLSKRLLLDKSASVDAEKSMISKLKAECGSGFTAKLEGMFKDIELSRDVMASFKESPQArmleSGQEDKDIQLSV 908 
                  *****************************************************************************99989**96666689***** PP

      Cullin  478 kVLtagaWpterskesevsvklpeeledlieeFeefYkskhsgrkLtWlhslgsaelkatfpkkkyelqvstfqmvvLllFnd...eeeklsyeeiq 571 
                  +VLt+g+Wpt+++ e    v lpee+ +l+  F+++Y++kh+gr+L+W++ lg+++l a+fp +++el+vs+ q++vLllFnd    e +l y+ i 
  KOO20839.1  909 HVLTQGYWPTYPPVE----VCLPEEVLRLQGVFNDYYTKKHNGRRLQWHPYLGHCTLLANFPLGRKELNVSLNQAIVLLLFNDdlgAEGSLGYKSIL 1001
                  ************966....*********************************************99****************8798667******** PP

      Cullin  572 eatglpekeLkrtLqsLavakkarvLlkepkskdveptdefsvNaeF 618 
                  +atg+++keLk tLqsLa++k +rvL+kepk +dve++d+f + + F
  KOO20839.1 1002 SATGIEDKELKLTLQSLACGK-QRVLRKEPKGRDVEDEDSFFFEDTF 1047
                  *********************.9*******77**********99887 PP

>> Sod_Fe_C  Iron/manganese superoxide dismutases, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  129.9   0.0   1.1e-41   3.3e-38       1     100 [.     310     415 ..     310     417 .. 0.96

  Alignments for each domain:
  == domain 1  score: 129.9 bits;  conditional E-value: 1.1e-41
                 --HHHHHHHHHHHSSHHHHHHHHHHHHHHSSSSEEEEEEEETTTEEEEEEEETTTBGGGGTTC......EEEEEE-SGGGTHHHHTT-HHHHHHHHGGG CS
    Sod_Fe_C   1 psgelaeaieedfgslekfkkefkaaalavfgsGwawLvldkkkkLeivttknqdnplvkeak......plLalDvwehAYyldyqnkradYieafwnv 93 
                 p+g la+++ ++fgs++kfk++f+aaa++vfgsGwawL++ k+++++ivtt+nqdnpl++++       p++++DvwehAYyl+yqn+r++Yi+af+nv
  KOO20839.1 310 PKGVLADKMMAAFGSYDKFKEQFSAAAAGVFGSGWAWLAVAKDGSVKIVTTPNQDNPLMEGTGleegliPIMGIDVWEHAYYLKYQNRRPEYIAAFYNV 408
                 7899*******************************************************8776788999****************************** PP

                 BBHHHHH CS
    Sod_Fe_C  94 vnWkeve 100
                 +nW++v 
  KOO20839.1 409 INWNKVG 415
                 ****996 PP

>> Gar1  Gar1/Naf1 RNA binding region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  116.8   0.0   2.3e-37     7e-34       9     120 ..      93     191 ..      85     198 .. 0.92
   2 ?   -2.3   0.1       1.1   3.3e+03      72     102 ..    1048    1080 ..    1047    1096 .. 0.72

  Alignments for each domain:
  == domain 1  score: 116.8 bits;  conditional E-value: 2.3e-37
                 -TT----TTS-EEEEEEEEEEETTEEEEEE---S--B--BTT-EEEETT--EEEE--EEES-SSS-EEEEE--GGHHHHHHHTTTTSEEEEE-X....X CS
        Gar1   9 kedieigppeevleiGtvssivenevviksttsgekkvldfnsilflenktqiGkVdEifGpvnepyysVklnsseeikaksfkvgdkvyiapd..lpl 105
                    ++ gpp++v+e+G +++ +e+++v+kst  ++ kv++ n++++lenk+ +GkVdEifG ++e ++sVk+   ++++a+sfk+gdk+yi+p+  lpl
  KOO20839.1  93 GGFYSEGPPDSVVEMGIFQHSCEGDLVVKST--ND-KVPYLNAPIYLENKRDVGKVDEIFGTIQELLFSVKPA--TGMEATSFKAGDKLYINPEklLPL 186
                 467899*************************..43.9************************************..************************ PP

                 XXXXXXXXXXXXXXX CS
        Gar1 106 erfllteelkkkkgp 120
                 +rfl          p
  KOO20839.1 187 QRFL----------P 191
                 ***9..........3 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 1.1
                  SS-EEEEE--GG..HHHHHHHTTTTSEEEEE-X CS
        Gar1   72 nepyysVklnss..eeikaksfkvgdkvyiapd 102 
                  ++ +y++k+ns    e +++s ++ ++v+ + +
  KOO20839.1 1048 KNALYRIKINSIqmRESEQESEQTTERVFQDRQ 1080
                  577899999977666667778888888887776 PP

>> Sod_Fe_N  Iron/manganese superoxide dismutases, alpha-hairpin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   83.2   1.1   4.4e-27   1.3e-23       2      82 .]     225     303 ..     224     303 .. 0.90

  Alignments for each domain:
  == domain 1  score: 83.2 bits;  conditional E-value: 4.4e-27
                 ------SS-TTTTTTTS-HHHHHHHHHTHHHHHHHHHHHHHHCHHHHCHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTB- CS
    Sod_Fe_N   2 yeLpeLpYaydaLePhisketlelHhdkHhktYvnnlNkalekleeakkkleelvlkklekalrnnagghvnHslfwknls 82 
                 ++Lp+LpYaydaLePhi++ t+++Hhd Hh++YvnnlNka+++   a+  l +l+  ++  +l+n +ggh nH l w+++s
  KOO20839.1 225 FKLPPLPYAYDALEPHIDAATMKFHHDFHHQAYVNNLNKAMAGKPAAS--LVSLMPGAKAAKLNNAGGGHYNHCLLWNTMS 303
                 99***************************************9987654..555666678899****************996 PP

>> Cullin_Nedd8  Cullin protein neddylation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   82.5   0.2   5.3e-27   1.6e-23       1      62 [.    1078    1137 ..    1078    1138 .. 0.98

  Alignments for each domain:
  == domain 1  score: 82.5 bits;  conditional E-value: 5.3e-27
  Cullin_Nedd8    1 dRklaiqaaIVRiMKsrktlshneLvsevieqlskrftpsiadikkrIesLiekeYleRden 62  
                    dR+++i+aaIVRiMK+rktl+h  L+se  +ql  +f++++ d kkrIesLi++eYleRd++
    KOO20839.1 1078 DRQYQIDAAIVRIMKARKTLTHALLMSELFQQL--KFPLKPPDLKKRIESLIDREYLERDQG 1137
                    8********************************..9************************85 PP

>> KCNQ_channel  KCNQ voltage-gated potassium channel
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.6   3.3e-05       0.1      24     104 ..    1044    1124 ..    1027    1127 .. 0.78

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 3.3e-05
  KCNQ_channel   24 rtrfrtsl...rlkasasrqsseeaegpgeevleekslkcdllvedlipalkvviravrilkflvakrkfketLrPYDvkDvie 104 
                     + f+++l   ++ + ++r+s +e+e ++e v ++++++ d  +  ++ a k++  a+  +  l ++ kf   L+P D k  ie
    KOO20839.1 1044 EDTFKNALyriKINSIQMRESEQESEQTTERVFQDRQYQIDAAIVRIMKARKTLTHALL-MSELFQQLKF--PLKPPDLKKRIE 1124
                    44566664422666788999999*********************************986.5555555555..789999888887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1146 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       629  (0.0350828); expected 358.6 (0.02)
Passed bias filter:                      463  (0.0258241); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.73u 0.29s 00:00:01.02 Elapsed: 00:00:00.45
# Mc/sec: 7659.15
//
Query:       KOO20840.1  [L=140]
Description: serine threonine protein kinase with wd40 repeat, partial [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.4e-13   51.0   3.6    0.00023   21.9   0.0    3.8  4  WD40         WD domain, G-beta repeat
  ------ inclusion threshold ------
       0.14   12.5   0.0       0.81   10.0   0.0    2.1  2  ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain


Domain annotation for each model (and alignments):
>> WD40  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.0      0.39   3.5e+03      32      38 .]      11      17 ..       4      17 .. 0.84
   2 !   21.9   0.0   2.6e-08   0.00023       8      38 .]      31      59 ..      22      59 .. 0.83
   3 !   20.0   0.2     1e-07    0.0009       5      38 .]      66     102 ..      63     102 .. 0.77
   4 !    7.6   0.0   0.00083       7.5       7      29 ..     117     140 .]     112     140 .] 0.89

  Alignments for each domain:
  == domain 1  score: -0.8 bits;  conditional E-value: 0.39
                SEEEEEE CS
        WD40 32 gtvriWd 38
                gt+r Wd
  KOO20840.1 11 GTIRAWD 17
                89****9 PP

  == domain 2  score: 21.9 bits;  conditional E-value: 2.6e-08
                ESSSSEEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40  8 tGHssvtslafspdgawlasGsdDgtvriWd 38
                +G   +++l +s   +++++G dDgt+r+W+
  KOO20840.1 31 EGE--ISCLHVSELCDFVITGNDDGTIRLWN 59
                332..99**99999*******99*******8 PP

  == domain 3  score: 20.0 bits;  conditional E-value: 1e-07
                 EEEESS.SSEEEEEEETTSSE...EEEEETTSEEEEEE CS
        WD40   5 rtltGH.ssvtslafspdgaw...lasGsdDgtvriWd 38 
                  +l GH + vt+l +   g+    l++G  Dg+v +Wd
  KOO20840.1  66 ISLVGHtNTVTCLEVATRGSCellLSTGY-DGHVGVWD 102
                 5789**999****9666666677444555.*******9 PP

  == domain 4  score: 7.6 bits;  conditional E-value: 0.00083
                 EESS.SSEEEEEEETTSSEEEEEE CS
        WD40   7 ltGH.ssvtslafspdgawlasGs 29 
                 l++H + v +l+f+ +++ +++G+
  KOO20840.1 117 LKAHrQEVLCLRFNAHHQTFITGG 140
                 899*999************99997 PP

>> ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   0.0     9e-05      0.81      35      88 ..      28      79 ..      14      83 .. 0.89
   2 ?    0.9   0.0     0.062   5.6e+02      51      89 ..      87     129 ..      71     132 .. 0.48

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 9e-05
  ANAPC4_WD40 35 dkedsevrsLaWkpdgklLavaysdgevrlldaesgkvvhslsvksekavtclg 88
                 +++++e+++L+ ++   +   + +dg++rl +  sg +++ +  +++  vtcl+
   KOO20840.1 28 HETEGEISCLHVSELCDFVITGNDDGTIRLWNPDSGLTISLVGHTNT--VTCLE 79
                 5678999********************************99977766..99997 PP

  == domain 2  score: 0.9 bits;  conditional E-value: 0.062
  ANAPC4_WD40  51 klLavaysdgevrlldaesgk....vvhslsvksekavtclgW 89 
                  +lL     dg+v + d+ + +    +++++  ++ ++v cl +
   KOO20840.1  87 ELLLSTGYDGHVGVWDITKRRnelpCLEAMLKAHRQEVLCLRF 129
                  4666666677777776655431111233322222224666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (140 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       259  (0.0144459); expected 358.6 (0.02)
Passed bias filter:                      238  (0.0132746); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.40u 0.26s 00:00:00.66 Elapsed: 00:00:00.43
# Mc/sec: 986.10
//
Query:       KOO20841.1  [L=510]
Description: hypothetical protein Ctob_003704 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.1e-08   33.1   6.4      0.029   13.9   0.0    4.5  4  EF-hand_1  EF hand
    4.4e-08   32.4   2.9       0.42   10.7   0.0    4.4  4  EF-hand_6  EF-hand domain
    3.2e-07   30.7   3.6    0.00053   20.4   0.8    3.1  2  EF-hand_7  EF-hand domain pair
    9.7e-05   22.1   3.1      0.026   14.4   1.0    3.5  3  EF-hand_8  EF-hand domain pair
    0.00012   21.4   3.9        1.5    8.4   0.0    4.6  4  EF-hand_5  EF hand
  ------ inclusion threshold ------
      0.012   15.1   0.9      0.027   14.0   0.4    1.8  2  PRORP      Protein-only RNase P
       0.11   13.2   0.5       0.57   10.9   0.2    2.4  3  DUF573     Protein of unknown function, DUF573


Domain annotation for each model (and alignments):
>> EF-hand_1  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.1   0.0      0.33   8.5e+02      16      28 ..     197     209 ..     196     210 .. 0.88
   2 !    7.7   0.0    0.0011       2.8       3      17 ..     291     305 ..     289     305 .. 0.91
   3 !   13.9   0.0   1.1e-05     0.029       8      28 ..     305     325 ..     304     326 .. 0.90
   4 !    8.1   4.6   0.00083       2.1       2      23 ..     347     368 ..     346     369 .. 0.93

  Alignments for each domain:
  == domain 1  score: -0.1 bits;  conditional E-value: 0.33
                 EEEHHHHHHHHHH CS
   EF-hand_1  16 kIdfeEfkellkk 28 
                 +I+ +E+++++++
  KOO20841.1 197 RISPKELLNVMEH 209
                 59********986 PP

  == domain 2  score: 7.7 bits;  conditional E-value: 0.0011
                 HHHHHHHTTTSSSEE CS
   EF-hand_1   3 keiFrefDkDgdGkI 17 
                 +e+F+  D ++dGk+
  KOO20841.1 291 RELFKCWDYNNDGKV 305
                 89***********97 PP

  == domain 3  score: 13.9 bits;  conditional E-value: 1.1e-05
                 HHTTTSSSEEEHHHHHHHHHH CS
   EF-hand_1   8 efDkDgdGkIdfeEfkellkk 28 
                 + Dk+ +G++++ Efke++++
  KOO20841.1 305 VWDKNSNGTLSKPEFKEAITR 325
                 57****************987 PP

  == domain 4  score: 8.1 bits;  conditional E-value: 0.00083
                 HHHHHHHHTTTSSSEEEHHHHH CS
   EF-hand_1   2 lkeiFrefDkDgdGkIdfeEfk 23 
                 ++e+F+ fD D +  I+++Efk
  KOO20841.1 347 MDELFDFFDEDTSFSISIDEFK 368
                 79*******************8 PP

>> EF-hand_6  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.0      0.88   2.3e+03      16      27 ..     197     208 ..     196     214 .. 0.87
   2 !    8.1   0.0    0.0011       2.8       3      17 ..     291     305 ..     289     305 .. 0.93
   3 !   10.7   0.0   0.00016      0.42       8      27 ..     305     324 ..     304     331 .. 0.90
   4 !    9.6   2.0   0.00036      0.92       2      24 ..     347     369 ..     346     379 .. 0.89

  Alignments for each domain:
  == domain 1  score: -1.0 bits;  conditional E-value: 0.88
   EF-hand_6  16 kidaeElrkalr 27 
                  i+++El +++ 
  KOO20841.1 197 RISPKELLNVME 208
                 599******997 PP

  == domain 2  score: 8.1 bits;  conditional E-value: 0.0011
   EF-hand_6   3 reaFklfDkdgdGki 17 
                 re+Fk +D+++dGk+
  KOO20841.1 291 RELFKCWDYNNDGKV 305
                 89***********97 PP

  == domain 3  score: 10.7 bits;  conditional E-value: 0.00016
   EF-hand_6   8 lfDkdgdGkidaeElrkalr 27 
                  +Dk+ +G++++ E++ a++
  KOO20841.1 305 VWDKNSNGTLSKPEFKEAIT 324
                 68***************998 PP

  == domain 4  score: 9.6 bits;  conditional E-value: 0.00036
   EF-hand_6   2 lreaFklfDkdgdGkidaeElrk 24 
                 ++e+F+ fD d + +i+++E+++
  KOO20841.1 347 MDELFDFFDEDTSFSISIDEFKA 369
                 89*******************97 PP

>> EF-hand_7  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.3   0.1     7e-05      0.18      35      69 ..     260     322 ..     245     324 .. 0.61
   2 !   20.4   0.8   2.1e-07   0.00053      12      68 ..     307     369 ..     305     372 .. 0.86

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 7e-05
   EF-hand_7  35 a...................gegsklsdeelellfkef.........DtdkdGvisfdEFlkl 69 
                 a                     + k  +   ++lfk++         D++++G++s  EF+++
  KOO20841.1 260 AselslavaraairmidwidFKAAKGERADTRELFKCWdynndgkvwDKNSNGTLSKPEFKEA 322
                 444444444445555555554444445666789*****7777777777777778888888877 PP

  == domain 2  score: 20.4 bits;  conditional E-value: 2.1e-07
   EF-hand_7  12 Dtdgdgyldkeellrllrkifqga.......gegsklsdeelellfkefDtdkdGvisfdEFlk 68 
                 D++ +g l+k e+++++++++           ++ k s++ +++lf+ fD d + +is dEF++
  KOO20841.1 307 DKNSNGTLSKPEFKEAITRFINLVhktpsefLRNLK-SPQDMDELFDFFDEDTSFSISIDEFKA 369
                 9*****************988644878887544544.7799*********************86 PP

>> EF-hand_8  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.1   0.0    0.0079        20      27      43 ..     289     305 ..     271     308 .. 0.89
   2 ?    1.1   0.0      0.15   3.7e+02      36      50 ..     307     321 ..     305     326 .. 0.83
   3 !   14.4   1.0     1e-05     0.026       5      53 ..     314     372 ..     310     374 .. 0.73

  Alignments for each domain:
  == domain 1  score: 5.1 bits;  conditional E-value: 0.0079
   EF-hand_8  27 evdilfrefDtdgdGki 43 
                 + ++lf++ D ++dGk+
  KOO20841.1 289 DTRELFKCWDYNNDGKV 305
                 6799***********98 PP

  == domain 2  score: 1.1 bits;  conditional E-value: 0.15
   EF-hand_8  36 DtdgdGkisfeEFcv 50 
                 D + +G++s+ EF +
  KOO20841.1 307 DKNSNGTLSKPEFKE 321
                 67889*******986 PP

  == domain 3  score: 14.4 bits;  conditional E-value: 1e-05
   EF-hand_8   5 Itreelrril.rilglkk.........glseeevdilfrefDtdgdGkisfeEFcvlle 53 
                 +++ e+++++ r + l +           s++++d+lf+ fD+d +  is +EF + le
  KOO20841.1 314 LSKPEFKEAItRFINLVHktpseflrnLKSPQDMDELFDFFDEDTSFSISIDEFKAKLE 372
                 555566666666665555556665555459************************98666 PP

>> EF-hand_5  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.4   0.0      0.36   9.2e+02      15      25 .]     197     207 ..     197     207 .. 0.87
   2 !    7.2   0.0    0.0014       3.7       3      16 ..     292     305 ..     290     305 .. 0.89
   3 !    8.4   0.0    0.0006       1.5       9      23 ..     307     321 ..     307     323 .. 0.94
   4 ?    1.2   2.1      0.12     3e+02       2      23 ..     348     369 ..     347     371 .. 0.81

  Alignments for each domain:
  == domain 1  score: -0.4 bits;  conditional E-value: 0.36
                 CE-HHHHHHHH CS
   EF-hand_5  15 kIskeELktlv 25 
                 +Is+ EL +++
  KOO20841.1 197 RISPKELLNVM 207
                 7******9876 PP

  == domain 2  score: 7.2 bits;  conditional E-value: 0.0014
                 HHHHHH-SS-SSCE CS
   EF-hand_5   3 dtFqaiDlNgDGkI 16 
                 ++F++ D N+DGk+
  KOO20841.1 292 ELFKCWDYNNDGKV 305
                 68**********97 PP

  == domain 3  score: 8.4 bits;  conditional E-value: 0.0006
                 -SS-SSCE-HHHHHH CS
   EF-hand_5   9 DlNgDGkIskeELkt 23 
                 D+N  G++sk E+k+
  KOO20841.1 307 DKNSNGTLSKPEFKE 321
                 9************97 PP

  == domain 4  score: 1.2 bits;  conditional E-value: 0.12
                 HHHHHHH-SS-SSCE-HHHHHH CS
   EF-hand_5   2 kdtFqaiDlNgDGkIskeELkt 23 
                 +++F+ +D + +  Is++E+k+
  KOO20841.1 348 DELFDFFDEDTSFSISIDEFKA 369
                 568889998888899****986 PP

>> PRORP  Protein-only RNase P
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.4   1.1e-05     0.027      19     105 ..     314     402 ..     308     434 .. 0.77
   2 ?   -2.0   0.0       0.8     2e+03     100     142 ..     439     482 ..     410     486 .. 0.67

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 1.1e-05
       PRORP  19 lseeefeelresllkkvleredkfkk..ttPeelerfqkfvektlpfdiviDglnvaklvkkkkesivkaqallev.vrqlakqklrllv 105
                 ls+ ef+e  +++++ v +  ++f +   +P+++++  +f ++ ++f i iD     kl kkkk+s+  aq+ +++ v++  k +l++l 
  KOO20841.1 314 LSKPEFKEAITRFINLVHKTPSEFLRnlKSPQDMDELFDFFDEDTSFSISIDEFKA-KLEKKKKKSVDAAQVTAQApVKEAPKVELKVLC 402
                 7788999999999******99999773359************************98.899999888888888777524444444666554 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 0.8
       PRORP 100 klrllvlgrkhmlkekskw.ekkelekikeaaalfltdnlse.DD 142
                 +++l ++ +++ l+  ++w  k++l++++++a + +++  s  DD
  KOO20841.1 439 NAQLNLI-KQRYLNAAASWdAKEKLRALQAEAPITTANVNSRrDD 482
                 4455444.4555577777768999999999998887776554155 PP

>> DUF573  Protein of unknown function, DUF573
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.0       4.2   1.1e+04      46      58 ..      67      79 ..      50      90 .. 0.60
   2 ?   10.9   0.2   0.00022      0.57      27      67 ..     343     382 ..     326     398 .. 0.82
   3 ?   -2.8   0.0       4.1   1.1e+04      58      74 ..     444     460 ..     433     473 .. 0.67

  Alignments for each domain:
  == domain 1  score: -2.8 bits;  conditional E-value: 4.2
      DUF573 46 dvsksqlseKlrr 58
                 ++ + l eK+r+
  KOO20841.1 67 AATAHHLCEKYRN 79
                4444444444443 PP

  == domain 2  score: 10.9 bits;  conditional E-value: 0.00022
      DUF573  27 spksdldafyeavksslssdvsksqlseKlrrLkkkyrnav 67 
                 sp +d+d++++++ + +s++ s ++++ Kl + kkk   a+
  KOO20841.1 343 SP-QDMDELFDFFDEDTSFSISIDEFKAKLEKKKKKSVDAA 382
                 22.9****************************999966555 PP

  == domain 3  score: -2.8 bits;  conditional E-value: 4.1
      DUF573  58 rLkkkyrnavskikkgk 74 
                  +k++y na++  ++++
  KOO20841.1 444 LIKQRYLNAAASWDAKE 460
                 56777777766554333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (510 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1239  (0.0691059); expected 358.6 (0.02)
Passed bias filter:                      557  (0.031067); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.63u 0.27s 00:00:00.90 Elapsed: 00:00:00.45
# Mc/sec: 3417.53
//
Query:       KOO20842.1  [L=645]
Description: selenoprotein o [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.4e-65  219.7   0.0    3.7e-62  210.6   0.0    2.9  2  UPF0061   Uncharacterized ACR, YdiU/UPF0061 family
    6.9e-05   23.3   2.4    0.00014   22.3   2.4    1.5  1  ShK       ShK domain-like


Domain annotation for each model (and alignments):
>> UPF0061  Uncharacterized ACR, YdiU/UPF0061 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.3   0.0    0.0016        14      15      97 ..      61     159 ..      49     168 .. 0.71
   2 !  210.6   0.0   4.2e-66   3.7e-62     102     465 ..     202     611 ..     194     613 .. 0.83

  Alignments for each domain:
  == domain 1  score: 4.3 bits;  conditional E-value: 0.0016
     UPF0061  15 gsdfydeveaaefpkkilrvrndalle.elgldeeevkdeelieifgke...........kgiepflalrYhGyQF.....GeynpqLGDGRgfllgqv 96 
                 +s ++  v+++ ++k +l++ + ++ +  lglde+e++++ ++++f++            +  +p+ al   G        G      GDGR++  g+v
  KOO20842.1  61 SSGHFVLVRPTPLNKPRLVTYSPEVCTtLLGLDESECRSQLFVKLFSGGdvedeipgfnqQWATPY-ALSIYGQEIkpdgaGPRGYGYGDGRAISIGEV 158
                 445677899999999999999988865168*****************9888888877776666677.76666655422222333344677777777766 PP

     UPF0061  97 r 97 
                 r
  KOO20842.1 159 R 159
                 5 PP

  == domain 2  score: 210.6 bits;  conditional E-value: 4.2e-66
     UPF0061 102 elydfglKGsGlTPySRsaDGrlvLksgvREvlasealhklgvrtsralslie.tgekllRe.....................dePspersavvvRlar 178
                 + ++++lKGsG+TP+ R++DGr+vL+s++RE++ase++++lgv+t+ralsl+  ++e++ R                      d    er a+  R+ar
  KOO20842.1 202 TPWELQLKGSGKTPFCRGSDGRAVLRSSLREFVASETMAALGVPTTRALSLVVsADERVQRAwytnksaaiaigaikrdkhggDVVRAERVAITTRVAR 300
                 56799**********************************************99899*****999999999999999997776666778*********** PP

     UPF0061 179 shiRfGtferlkylkr......ldllkkLldyvieeyypeladee...........ekyaqfyaelvervAelvAqWmaaGFchgVlNTDNmsilGesl 260
                 s++R+G+fe++  + +      l++l++L+ ++++  ype+   +               ++ ++   r A+l A W  +G++++ +N DN  + G +l
  KOO20842.1 301 SFLRVGQFELYGRRASrreldgLRQLEQLARHALRREYPEVLGPAtctraagtplqVLLLEMARKASARFARLSADWIRVGYTQSNFNADNCLVGGVTL 399
                 *********9966543111111345778999**********4444455556655545667788889999****************************** PP

     UPF0061 261 DYGPyaFldkydpkftaayfDyagrYsyanQpsiilwNLeqlaeplallieaeeleeale....eykevyttkYaqlmlkkLGleklsekekefdsell 355
                 DYGP++F+++ydp++   +  +   +s+ nQp+ +  NL+++ ++l+ l++ae + e       +y+  ++++  ++ ++kLGl   + +    +++l 
  KOO20842.1 400 DYGPFGFIERYDPAWG-MWVGSGDHFSFMNQPRAAGRNLQMFLRSLEPLVDAEGIAELRYivqrSYEADMERALGEMWASKLGLPPHARAR---ATRLW 494
                 **************96.5788999**************************99887664334556899999999999999999995544444...56*** PP

     UPF0061 356 eellelLqetqvdYneffveLaeskskkwr...deaesileese........keleeekleeWrelYkklleeleedeleeraerlkkvNpktvllrpl 443
                 ++l  l+qet++d++ f+++La+  +  ++   dea+++ +  +        ++ + +++ +W + + + l    ed  +   +r++ +Npk+v+++++
  KOO20842.1 495 RALAVLMQETTTDWTIFWRQLAQVADAAAEgvrDEATHL-TLLApafytppaDQDSASRWMDWLRDWWSELD--VEDGRKGAGARMRLANPKFVPREWM 590
                 **********************99887776543444443.33334677755433334667777777777777..3567888899*************** PP

     UPF0061 444 ieeviekiaeeddlsplkklle 465
                 + e++ + ae+dd+ pl++ll 
  KOO20842.1 591 LVEAYTA-AEKDDYGPLRTLLA 611
                 *****99.9********99975 PP

>> ShK  ShK domain-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.3   2.4   1.6e-08   0.00014       6      36 ..     168     196 ..     165     197 .. 0.90

  Alignments for each domain:
  == domain 1  score: 22.3 bits;  conditional E-value: 1.6e-08
         ShK   6 ssdCaswaalgfCtnptyrdlmkeqCpktCg 36 
                    C +wa +g+C ++   ++m + C+k+C+
  KOO20842.1 168 EEECQAWAHAGECAKNS--EYMLASCRKSCN 196
                 568***********999..***********8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (645 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       434  (0.0242066); expected 358.6 (0.02)
Passed bias filter:                      343  (0.019131); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.56u 0.25s 00:00:00.81 Elapsed: 00:00:00.43
# Mc/sec: 4543.20
//
Query:       KOO20843.1  [L=476]
Description: hypothetical protein Ctob_003706, partial [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (476 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       821  (0.0457917); expected 358.6 (0.02)
Passed bias filter:                      427  (0.0238162); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.52u 0.24s 00:00:00.76 Elapsed: 00:00:00.38
# Mc/sec: 3761.99
//
Query:       KOO20844.1  [L=710]
Description: choline transporter-like protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.4e-66  224.9  23.3    1.4e-66  224.9  23.3    1.9  2  Choline_transpo  Plasma-membrane choline transporter


Domain annotation for each model (and alignments):
>> Choline_transpo  Plasma-membrane choline transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   0.1     0.033   5.9e+02      48      66 ..     201     217 ..     181     276 .. 0.63
   2 !  224.9  23.3   7.9e-71   1.4e-66       2     325 ..     326     661 ..     325     662 .. 0.87

  Alignments for each domain:
  == domain 1  score: -0.6 bits;  conditional E-value: 0.033
  Choline_transpo  48 tllllllvsafwivvaval 66 
                      + ++++++++f ++++  l
       KOO20844.1 201 LAIVCIGIALFALAFY--L 217
                      1112222222222111..2 PP

  == domain 2  score: 224.9 bits;  conditional E-value: 7.9e-71
  Choline_transpo   2 illivavllllllivlrkrirlaiallkvaskaiksnpslllvplltllllllvsafwivvaval........ylassgestdkv......... 78 
                      ++l vavl+++ ++  rk+ir+a+al+k+a+ ++ + p  +++pl++l ++l ++++ +v ++ l        +                    
       KOO20844.1 326 VALTVAVLYMVAMCLARKKIRIAVALIKEACGVLADQPAAMALPLAVLGAQLPLLIYLVVGLLFLgtahlelaH----------Fttssaltah 409
                      67899********************************************************9555444433331..........2555566677 PP

  Choline_transpo  79 .........nsgsesglaavefessskvkalllyllfgllWtleflralqqvtvagavasWYfs.kkkdlpskfpvlkslkraltyhlGSialg 162
                               n++  +++   +  + s  +++ +y+lfg+lWt+e +r+++ +t++ga++ WYf  ++ +l s+ p+ +sl r+++yhlG+i +g
       KOO20844.1 410 stysqalviNEDLPVTIDLGS--YLSVQNGAYVYFLFGILWTMETVRNIGWTTLSGAFSDWYFFrRDAKLRSRAPLVQSLTRVVRYHLGTILFG 501
                      789999988555555443333..345567999********************************54445558889******************* PP

  Choline_transpo 163 Slilaivqllrlileylekklkkk..enavakcllcclkcclwclekflkflnrnayimvaiyGksFcesakdafellkrnglrvavldsvvdf 254
                      S+++a+vql+r++le +++++kk    na++k++++c+kccl c+ek lkf++++ yi+va++G sFc ++ ++f l+ ++++++a++  +v +
       KOO20844.1 502 SFLIALVQLVRILLELVDRQTKKLqeTNAALKLAIKCVKCCLYCFEKSLKFITNYCYIYVALQGSSFCSACIKTFGLITSQPAQLALNT-FVRV 594
                      ***********************9999999*******************************************************6666.9999 PP

  Choline_transpo 255 vlflgkl.lialltgliaylllkatltnpeelnsplvpllvvfiiayliasiflsvyesavdtifvcfaeDp 325
                      vl l++   i++++++i+   l+ +l np     p++p+l++++ ay+ias f  v++ a dt+fvc + D+
       KOO20844.1 595 VLGLIQTaGITVFCTWICHAHLE-RLGNP----EPMYPALITALAAYVIASSFALVFSCALDTLFVCAVRDK 661
                      99877552788888888877776.34455....5899******************************99996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (710 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1021  (0.0569468); expected 358.6 (0.02)
Passed bias filter:                      411  (0.0229238); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.62u 0.23s 00:00:00.85 Elapsed: 00:00:00.38
# Mc/sec: 5572.64
//
Query:       KOO20845.1  [L=1170]
Description: myosin x [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
   4.5e-146  487.9   0.0   1.5e-145  486.1   0.0    1.6  1  Myosin_head  Myosin head (motor domain)
      5e-05   23.7   1.9     0.0058   17.1   0.0    4.2  4  CBS          CBS domain
  ------ inclusion threshold ------
      0.014   15.8   0.4       0.08   13.3   0.0    2.6  2  AAA_16       AAA ATPase domain
      0.023   14.6   0.0      0.049   13.6   0.0    1.6  1  PB1          PB1 domain


Domain annotation for each model (and alignments):
>> Myosin_head  Myosin head (motor domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  486.1   0.0  3.3e-149  1.5e-145      85     670 ..       9     662 ..       3     667 .. 0.85

  Alignments for each domain:
  == domain 1  score: 486.1 bits;  conditional E-value: 3.3e-149
                  EEEEEEESSTTSSHHHHHHHHHHHHHHHSSSSSC..TCTTHHHHHHHHHHHHHHHHHEEEESSETTEESSEEEEEEEEE..TTSSEEEEEEEEECE-G CS
  Myosin_head  85 nqsilisGEsGAGKteatKkvlqylasvaeskek..veeeeleekilqsnPilEafGnAktvrndnssRFGKfieiefd..akgkiagakietYLLEk 178
                    +i+isGEsGAGKteatK +l+yl + ++   +  ++ + l+e++lq+nP+lEafGnA+t+rndnssRFGK iei+f   + ++iaga+i +YLLE+
   KOO20845.1   9 RHTIVISGESGAGKTEATKIILTYLVAASGDLVDldARAAILRERVLQANPLLEAFGNARTLRNDNSSRFGKLIEISFAggSGSRIAGARIINYLLER 106
                  569**********************99998876644778899************************************7224579************* PP

                  GGGT---TT--SBHHHHHHHHCS...THHHHHHTT--TCCGSTTTTTT..SSSSBTTS-HHHHHHHHHHHHHHHT--HHHHHHHHHHHHHHHHHCTSS CS
  Myosin_head 179 sRvvkqakeERnyHiFYqllaga...seeekkelkledvkdyaylsqs..geltvdgiddseefketkkaldilglseeeqkeifrivaailhlGnie 271
                   R+ +  ++ERn+Hi Yqlla +   ++ ++++l  +++kd +yls++  g   ++    +  f +t+  ld++g+ +e +++++ i++a+lhlGn++
   KOO20845.1 107 TRISTPPRGERNFHILYQLLAASprlPPALQQALPWKEPKDLTYLSSDpsGWGGAEVSAAVITFGNTSTCLDVIGVAAEAREQLWLILSAVLHLGNLT 204
                  ********************986222578999*************985114556777788999*********************************** PP

                  EEEECTTSSE...........EESSHHHHHHHHHHHTS-HHHHHHHHHSEEEEET.TEEEEEE-BHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT CS
  Myosin_head 272 fkkeakdeqa...........vledeeklekaaellgvdaeelekalvkrriktg.kevvskalnveqaevardalakaiyerlFdwlverinkslek 357
                  f+++++ +++            ++de++ ++ a+ll v  + l++a+++rr++++ ++vv k+++++qa+ +rdala+a+y+ +F+wlve++n++++ 
   KOO20845.1 205 FATKKAAASGqgspsvsgegcAPNDEDASSTLAALLSVTPAALSTAICRRRLAVRnQNVVLKEQSIQQAHDSRDALARALYNGVFEWLVEQLNSTIRG 302
                  *998866555556878888766777788999***********************96778999**********************************86 PP

                  SS........-S-SEEEEEEEEE-B---SSB-HHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHTTSSGCGS-GGGCCHHHHHHHHSSST...SHHHHH CS
  Myosin_head 358 kk........eekksfiGvLDiaGFEifeknsFEqlcinyvnEkLqqlFnelvlklEqeeYvrEgiewkfidfgldnqaiidLiekkpl...GilslL 444
                            e ++s + vLDi+GFE + +nsFEql iny+nEkLq+lFn +++ lEq+eY rEgiewk+i++ +dnq++++Lie +p    Gil+ L
   KOO20845.1 303 GGepctaptsEPRRSCVAVLDIYGFESLGTNSFEQLLINYANEKLQHLFNLHIFELEQKEYLREGIEWKEIEW-VDNQPTLELIEGRPRgvpGILASL 399
                  54444455557899***********************************************************.9***********886222689*** PP

                  HHHHTSTTS..-HHHHHHHHHHHH.TT..STTEEETTSTTTTTEEEEEETTCEEEEE-TTHHHHHH----HHHHHHHHTSSSHHHHHHCCSHCH.... CS
  Myosin_head 445 deecllpka..tdetfleklvkaf.sk..hakfeksrlkkgeakFiikHyAgkveYevegfleKnkDtlnedlvellksskkkllaelfkeeek.... 533
                  d+ ++   +   d+++l++l+ af sk  h+++ +++l ++ ++F+++HyAg+v+Y+v+gf  Kn ++l  d+ ell +++++ l+  ++ +      
   KOO20845.1 400 DDATWRTGGeeADTQMLQQLHTAFaSKlgHPSYVRPKL-HSATSFALVHYAGEVCYDVRGFSRKNFESLGPDVQELLAEATNPWLKANLHLVLGgfpe 496
                  *****998766899**********54333668999985.99*****************************************9887544433224566 PP

                  .........B--.........CSSSECCCCCSBHHHHHHHHHHHHHHHHCT..................SEEEEEEEE-SSSS--TT---HHHHHHHH CS
  Myosin_head 534 .........eakaeakksekkkkkkkkkkkfktvgskfkeslaeLmktles..................tnphfvRCikpnekkkakkldeslvleql 604
                           +a++  ++s + ++k+k k ++++vg +f+++l+eL++++++                  ++  +vRCik+n+++k++ lde+ ++ ql
   KOO20845.1 497 aaaavpttaAAEHVIRRSPSFARKRKGKLRQESVGEQFRTQLHELIEAIAApesgalqdaapyeerparNSCAYVRCIKSNSERKPWVLDEASCTLQL 594
                  66789885333333344445555666667889***************98642222222222222222224568************************* PP

                  HHTTHHHHHHHHHHSSSEEEEHHHHHHHHGGGSTTSS-SS.SSSHHHHHHHHHHHTTS..-GCGEEEC CS
  Myosin_head 605 rclGvlegirirraGfpnRitfeefvqrYkllakkelkkllkedakkaveailkelel..dkeeykiG 670
                  rc G++e++rir++ f++R   ++f+ r++ l+++   ++l+  ++ ++e++ ++ +l  d+  y +G
   KOO20845.1 595 RCAGMMEAVRIRKESFAYRLSIRDFLFRFTPLIRHPRSSSLNVPTEAGAEELAERSRLvaDELAYTLG 662
                  **********************************9999999999999999988765441145555555 PP

>> CBS  CBS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.4   0.0       0.2     9e+02      44      55 ..     680     691 ..     679     693 .. 0.89
   2 !   17.1   0.0   1.3e-06    0.0058       2      37 ..     704     740 ..     703     745 .. 0.92
   3 ?   -0.7   0.0      0.46     2e+03       7      25 ..     804     822 ..     798     835 .. 0.76
   4 ?    1.0   0.1      0.13   5.8e+02      10      37 ..    1055    1082 ..    1040    1093 .. 0.81

  Alignments for each domain:
  == domain 1  score: 0.4 bits;  conditional E-value: 0.2
                 EEEEHHHHHHHH CS
         CBS  44 GivtlrDllral 55 
                 Gi+t +D++r++
  KOO20845.1 680 GILTATDIARKV 691
                 9********986 PP

  == domain 2  score: 17.1 bits;  conditional E-value: 1.3e-06
                 HHHSBSSCEEEETTSBHHHHHHHHHHHTSSEEEE.EE CS
         CBS   2 gdimtrdvvtvppdttleealelmrekgvsrlPV.Vd 37 
                 +d+mt ++++v+ +++ + a+ lm+ +++++lPV V+
  KOO20845.1 704 ADVMTANPHVVTTSDPAANAFTLMTAHRFRHLPVdVP 740
                 79***********************999******884 PP

  == domain 3  score: -0.7 bits;  conditional E-value: 0.46
                 SSCEEEETTSBHHHHHHHH CS
         CBS   7 rdvvtvppdttleealelm 25 
                  ++ ++p  +t+++a+  +
  KOO20845.1 804 QPPAVIPYHATVRDAATAL 822
                 58999**********9766 PP

  == domain 4  score: 1.0 bits;  conditional E-value: 0.13
                  EEEETTSBHHHHHHHHHHHTSSEEEEEE CS
         CBS   10 vtvppdttleealelmrekgvsrlPVVd 37  
                  ++v+ d+ l ea++    kg++rl V++
  KOO20845.1 1055 IVVDSDEALLEAANHVLAKGLDRLQVTP 1082
                  6899999999999996699999998875 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.0   1.8e-05      0.08      17      84 ..       2      57 ..       1     141 [. 0.66
   2 ?   -1.7   0.1      0.74   3.3e+03      89     107 ..     526     549 ..     473     585 .. 0.48

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 1.8e-05
      AAA_16 17 ervrsgrpelvllsGesGvGKsslvrellralekdggiflrgkcdqlesaipysalaqalareellrq 84
                er+++g+ + +++sGesG GK+   + +l++l ++     +g+ ++l           a+ re++l++
  KOO20845.1  2 ERAAAGTRHTIVISGESGAGKTEATKIILTYLVAA-----SGDLVDL-------DARAAILRERVLQA 57
                78999999*********************988776.....6777666.......11222223333333 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 0.74
      AAA_16  89 aesaeleawrekleeala.....a 107
                  +++  e++r++l+e ++     +
  KOO20845.1 526 RQESVGEQFRTQLHELIEaiaapE 549
                 233466666666666666533331 PP

>> PB1  PB1 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.0   1.1e-05     0.049      10      69 ..    1010    1070 ..    1002    1083 .. 0.75

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 1.1e-05
                  TEEEEEEEEGSSS-HHHHHHHHHHHHTST.CCSEEEEEEETTSSEEEESSHHHHHHHHHHH CS
         PB1   10 ggirrelsvssnisfeeLrakvekrfkls.dedvklkYpdedgdlVtitsDeDLeealeea 69  
                   g+  +++  +   +  L a ++ +++ + d    + Y d+dgd + + sDe L ea +++
  KOO20845.1 1010 QGHFYRVHCTPAEGWPPLQAALAAKLEGHvDDLRGIVYTDDDGDRIVVDSDEALLEAANHV 1070
                  4444457778888888888888888888866666699******************998876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1170 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       446  (0.0248759); expected 358.6 (0.02)
Passed bias filter:                      377  (0.0210274); expected 358.6 (0.02)
Passed Vit filter:                        61  (0.00340231); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.83u 0.27s 00:00:01.10 Elapsed: 00:00:00.45
# Mc/sec: 7746.19
//
Query:       KOO20846.1  [L=595]
Description: translesion DNA polymerase-rev1 deoxycytidyl transferase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.6e-38  132.0   0.0    2.8e-38  131.3   0.0    1.4  1  IMS       impB/mucB/samB family
    1.5e-15   57.9   0.0    2.9e-15   57.0   0.0    1.4  1  IMS_C     impB/mucB/samB family C-terminal domain
     0.0012   19.1   0.0     0.0062   16.7   0.0    2.1  2  Cdd1      Pathogenicity locus
     0.0029   17.9   0.1      0.013   15.8   0.1    2.1  1  DUF1805   Domain of unknown function (DUF1805)
  ------ inclusion threshold ------
      0.021   15.1   0.0      0.095   13.1   0.0    2.1  2  IMS_HHH   IMS family HHH motif
      0.061   13.1   0.0       0.11   12.3   0.0    1.3  1  FlgO      FlgO protein


Domain annotation for each model (and alignments):
>> IMS  impB/mucB/samB family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  131.3   0.0   9.2e-42   2.8e-38       1     150 []      88     230 ..      88     230 .. 0.96

  Alignments for each domain:
  == domain 1  score: 131.3 bits;  conditional E-value: 9.2e-42
                 EEETTHHHHHHHHHT.T-TTS-EEEEET....TEEEEE-HHHHTTT--TTSBHHHHHTTHTT-EEEEEE-HHHHHHHHHHHHHHHHH-S..EEEEETTE CS
         IMS   1 iDmdaFyasverardpeLkgkPvvvaqgsekrgiviavsyeArayGvkrgmrikeakklcpdlivvkvdlekyrraskkileilkrfispkvekasiDE 99 
                 iDmd+F+asv+ a +peL+g Pv+va  + + + +++++y+Ara+Gv++gm+ ++ak+lcp li++++++e+y+++ + +++ +    +p+v  +s+DE
  KOO20846.1  88 IDMDCFFASVAVAGRPELEGLPVAVAWSDGN-AEIASANYAARAFGVRNGMWGSQAKELCPSLITMPYEFERYEEIAEVMYRAVFAV-TPHVMGVSVDE 184
                 8*************************99886.*******************************************************.88********* PP

                 EEEE-HHHHHHHH-SHHHHHHHHHHHHHHHH---EEEEEESSHHHHHHHHH CS
         IMS 100 ayldltgleelaesegaalakelrkaikeelgltvsiGiasnkllAKlase 150
                 +y+dl++l    +s+ +a a+ lr++i +++g+ +siGi++n+llA++a++
  KOO20846.1 185 CYADLSAL----GSP-EATAATLRETIRTQTGCVASIGIGPNRLLARVATK 230
                 *******6....444.6789****************************985 PP

>> IMS_C  impB/mucB/samB family C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.0   0.0   9.8e-19   2.9e-15       3     112 ..     313     440 ..     312     443 .. 0.91

  Alignments for each domain:
  == domain 1  score: 57.0 bits;  conditional E-value: 9.8e-19
       IMS_C   3 earpepksissektfpepyd.esklkkelreLaeelarrLrdkglvartitlklrys..................dfhasrsatLprptsdtreileaa 82 
                 earp +ksi++  +++ ++  ++++++  r+L ee+  rL ++g  ++++tlkl  +                  ++h+srs tLp +t+d ++i++++
  KOO20846.1 313 EARPTRKSIGAQSSWGVRFAtAEEAESFGRQLGEEVGSRLAAHGYRGKHLTLKLWRAmegaestgprkgsmghgmCDHISRSITLPSATNDKALIAREV 411
                 589**************7764666999999************************655777778888888899999999********************* PP

       IMS_C  83 lkLlrrlidepglpirligvsasnlvekae 112
                  k+lr++   ++ ++r +gvs++ l++ a+
  KOO20846.1 412 TKMLREVSI-EPSKLRGMGVSVGTLSSAAA 440
                 *********.***************96555 PP

>> Cdd1  Pathogenicity locus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.0      0.87   2.6e+03      29      59 ..     158     188 ..     153     190 .. 0.75
   2 !   16.7   0.0   2.1e-06    0.0062       8      44 ..     255     291 ..     251     299 .. 0.88

  Alignments for each domain:
  == domain 1  score: -1.3 bits;  conditional E-value: 0.87
        Cdd1  29 sveelkgedpeelyeklekltgarhDpCvld 59 
                 + ee+++    ++++   +++g+ +D C  d
  KOO20846.1 158 RYEEIAEVMYRAVFAVTPHVMGVSVDECYAD 188
                 55666666666777778889999*****877 PP

  == domain 2  score: 16.7 bits;  conditional E-value: 2.1e-06
        Cdd1   8 lqdiPniGkalaedlvelGirsveelkgedpeelyek 44 
                  +++P++G ++a++l ++G+r++ el+  d+ ++ ++
  KOO20846.1 255 VRELPGVGYHIAQKLEAIGVRTCGELRAADAGRIRDA 291
                 689************************9998777665 PP

>> DUF1805  Domain of unknown function (DUF1805)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.1   4.3e-06     0.013      35      59 ..     118     142 ..     117     145 .. 0.93

  Alignments for each domain:
  == domain 1  score: 15.8 bits;  conditional E-value: 4.3e-06
                 HSB-SEE-HHHHHTT--TT-BHHHH CS
     DUF1805  35 aapvesvteaAeelGikeGmtgkea 59 
                 +a+++s++ aA++ G+++Gm g +a
  KOO20846.1 118 NAEIASANYAARAFGVRNGMWGSQA 142
                 79********************998 PP

>> IMS_HHH  IMS family HHH motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.0   3.2e-05     0.095       6      32 .]     248     274 ..     244     274 .. 0.85
   2 ?   -3.0   0.0       4.2   1.3e+04      14      24 ..     423     433 ..     423     438 .. 0.78

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 3.2e-05
     IMS_HHH   6 efLwplpitkipGiGgklgekLeklGi 32 
                 ++L + +++++pG+G   ++kLe++G+
  KOO20846.1 248 TLLTDESVRELPGVGYHIAQKLEAIGV 274
                 55666689****************997 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 4.2
     IMS_HHH  14 tkipGiGgklg 24 
                 +k++G+G + g
  KOO20846.1 423 SKLRGMGVSVG 433
                 68999997766 PP

>> FlgO  FlgO protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   3.6e-05      0.11      29      56 ..     331     358 ..     308     365 .. 0.87

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 3.6e-05
        FlgO  29 lddlqktstLGrqlaEsliselqqrgyk 56 
                 + + ++++++Grql E++ s+l+ +gy+
  KOO20846.1 331 FATAEEAESFGRQLGEEVGSRLAAHGYR 358
                 5577899********************7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (595 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       340  (0.0189637); expected 358.6 (0.02)
Passed bias filter:                      268  (0.0149478); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.50u 0.30s 00:00:00.80 Elapsed: 00:00:00.43
# Mc/sec: 4148.19
//
Query:       KOO20847.1  [L=293]
Description: hypothetical protein Ctob_000129 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (293 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       700  (0.0390429); expected 358.6 (0.02)
Passed bias filter:                      355  (0.0198003); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.44u 0.24s 00:00:00.68 Elapsed: 00:00:00.40
# Mc/sec: 2211.50
//
Query:       KOO20848.1  [L=936]
Description: hypothetical protein Ctob_000128 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (936 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2697  (0.150427); expected 358.6 (0.02)
Passed bias filter:                      435  (0.0242624); expected 358.6 (0.02)
Passed Vit filter:                       137  (0.00764125); expected 17.9 (0.001)
Passed Fwd filter:                        41  (0.0022868); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 1.80u 0.36s 00:00:02.16 Elapsed: 00:00:00.58
# Mc/sec: 4872.90
//
Query:       KOO20849.1  [L=128]
Description: peptide methionine sulfoxide reductase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.4e-26   91.9   1.0    1.1e-25   90.6   1.0    1.5  1  PMSR      Peptide methionine sulfoxide reductase


Domain annotation for each model (and alignments):
>> PMSR  Peptide methionine sulfoxide reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   90.6   1.0     6e-30   1.1e-25      19     149 ..       1     118 [.       1     122 [. 0.94

  Alignments for each domain:
  == domain 1  score: 90.6 bits;  conditional E-value: 6e-30
                 STTEEEEEEEEESSS-SS--HHHHHTTTT--EEEEEEEEETTTS-HHHHHHHHHHTS-TT-SSEETTEESGGG--EEEESSCCHHHHHHHHHHHHHTTH CS
        PMSR  19 lkGvlstevGYagGktenptYeevcsgktghaEavevvydpekvsleellelffeihDptqlnrqgnDvGtqYrsaiyytneeqkevaeevleelqkkk 117
                 ++G++s +vGY+gGk  +p+Y++vc+g +gh+Ea++v++dp+++s+e++++  + +         g  +  qY sa+++ ++eq +va++v +el k+ 
  KOO20849.1   1 MEGITSSTVGYTGGKHGEPNYDTVCRG-DGHTEAIKVEFDPAVISYERIMRKVLAQ-------ASGPPRKAQYMSAVWFMDDEQAKVAKQVAKELGKD- 90 
                 68************************9.9*********************998764.......5689999*************************999. PP

                 TTSSS---EEEEG-SEEE--CCCTTHHHH-TT CS
        PMSR 118 alkkkivteieplkefykaeeyHqqYleknpe 149
                     +  + i p+ ++ +aeeyHq+Y+ek+++
  KOO20849.1  91 ----REGVPILPAATWHDAEEYHQKYYEKQKK 118
                 ....566899*******************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (128 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       743  (0.0414412); expected 358.6 (0.02)
Passed bias filter:                      585  (0.0326287); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.27s 00:00:00.64 Elapsed: 00:00:00.39
# Mc/sec: 973.77
//
Query:       KOO20850.1  [L=699]
Description: calcium calmodulin-dependent protein kinase kinase 1 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    6.4e-46  156.9   0.0    9.1e-46  156.3   0.0    1.2  1  Pkinase         Protein kinase domain
    4.3e-26   91.7   0.0    8.1e-26   90.9   0.0    1.4  1  Pkinase_Tyr     Protein tyrosine kinase
    6.8e-15   55.4   0.0    1.2e-14   54.6   0.0    1.4  1  IPK             Inositol polyphosphate kinase
      0.009   15.4   0.0      0.014   14.7   0.0    1.3  1  Kinase-like     Kinase-like
  ------ inclusion threshold ------
      0.024   14.6   0.3        3.2    7.6   0.0    2.5  2  APH             Phosphotransferase enzyme family
      0.041   12.7   0.0      0.062   12.1   0.0    1.2  1  Pkinase_fungal  Fungal protein kinase
      0.062   12.9   0.0        5.3    6.6   0.0    2.3  2  FTA2            Kinetochore Sim4 complex subunit FTA2


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  156.3   0.0   3.6e-49   9.1e-46       2     264 .]      71     348 ..      70     348 .. 0.90

  Alignments for each domain:
  == domain 1  score: 156.3 bits;  conditional E-value: 3.6e-49
                 EEEEEEEEESSEEEEEEEETTTTEEEEEEEEECHCHCHHHH................HHHHHHHHHHHHHSCTTB--EEEEEEE..SSEEEEEEE--TT CS
     Pkinase   2 ekleklGeGsfGkVykaveketgkivAvKkikkekakkkke................kkvlrEikilkklkhpnivrlyevfee..kdelylvleyveg 82 
                 + ++ lG+G+fG+V+ a   + ++++A+K+++k+  kk ++                 +v +Ei+++kk++hpn v++y+v+ +   de++lv eyv+g
  KOO20850.1  71 KIVRPLGRGAFGEVFLAQ--QFDDHYAIKVLRKSALKKLHRpgpgvawgrgrtiaavASVKTEIAMMKKIEHPNCVHIYDVILDpaCDEVFLVIEYVDG 167
                 67899************9..68999************99999************99999************************97779*********** PP

                 EBHHHHHH..HHSS--HHHHHHHHHHHHHHHHHHHHTTEE-SS-SGGGEEEETTTE....EEE-SGTTSEESSSSCSBCTTTSCGGGS-HHHH...TTS CS
     Pkinase  83 geladlle..rkgslseeeakkiakqilegleylHskgiiHrDlKpeNiLidekge....lKitDFGlakelessskltsfvgtseYlAPEvl...ken 172
                 g  +++    r   l+e+e+ ++++++  gleylH + iiHrD+KpeN+L+ ++ +    lKi+DFG ++  e + +++   gt+ + +PE      + 
  KOO20850.1 168 GPSQKFDAdgRPIPLPESEIWSYLRHLTMGLEYLHMHAIIHRDIKPENLLLAKTPKlgqiLKIADFGTSCLCEGDANAQRTAGTPAFFSPERCtteASG 266
                 *9888777657778**************************************88878999*********************************887445 PP

                 CB.SHHHHHHHHHHHHHHHHHSS-STTTSSHHHHHHHHHHTHHHHHHHCTSHH...HHHTTS-HHHHHHHHHHT-SSGCCSTTHHHHHTSGGG CS
     Pkinase 173 ey.skkvDvWslGvilyelltgkppfsgekgkekvekeldqlekilkilgetkeklpeaseiseeakdllkkllkkdpkkRltaeellqhpyl 264
                  y ++ vD+W++Gv+++  ++g +p+ + ++   +e+++           +  e    +++ s+ + ++++ ll+++  +Rlt  +l  h++l
  KOO20850.1 267 TYdGRVVDLWAVGVTIFLWVCGWTPYTAPTTALLMETIA-----------NAPERAVAPEKTSPGLASVIEGLLTREVATRLTLVQLRLHEWL 348
                 5669***********************444433222222...........234566778999*****************************97 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   90.9   0.0   3.1e-29   8.1e-26       2     255 ..      71     342 ..      70     346 .. 0.84

  Alignments for each domain:
  == domain 1  score: 90.9 bits;  conditional E-value: 3.1e-29
                  EEEEEEEEESSEEEEEEEEET..TTTSSEEEEEEEEEST.........TSSHHHHHHHHHHHHHHHTS-BTTB--EEEEEE..SSSSEEEEEE--TTE CS
  Pkinase_Tyr   2 elgkklGeGafGkVvegtlkg..ekekkevkVavKtlke.........eateeekeelleeakimkklkhpnivkllgvct..keepllivteyvkgG 86 
                  ++ + lG+GafG+V+ ++  +     k   k a+K+l++         + t    +++ +e+++mkk++hpn v+++ v++    +++++v+eyv+gG
   KOO20850.1  71 KIVRPLGRGAFGEVFLAQQFDdhYAIKVLRKSALKKLHRpgpgvawgrGRTIAAVASVKTEIAMMKKIEHPNCVHIYDVILdpACDEVFLVIEYVDGG 168
                  57789*************997444445556778998875555555554666677899999*********************776788*********** PP

                  BHHHHHHHTCTTTSBHHHHHHHHHHHHHHHHHHHHTTEEEST-SGGGEEEEE....TTEEEE-STTTHEETTTSSEEEETTSSTSGGGGS-HHHHHHS CS
  Pkinase_Tyr  87 dLlkfLrkkekekltlkdllsfalqvAkGmeyLeskklvHrdlaarNvLlse....nkvvkisDfGLardiekddeyvkkeeaklpvkWmapEslkek 180
                    +kf  + +  +l  +++ s+  ++  G+eyL+ + ++Hrd+   N Ll++    +++ ki+DfG +   e d +   +++a     + +pE  +++
   KOO20850.1 169 PSQKFDADGRPIPLPESEIWSYLRHLTMGLEYLHMHAIIHRDIKPENLLLAKtpklGQILKIADFGTSCLCEGDANA--QRTAG-TPAFFSPERCTTE 263
                  *****99999999**************************************98888899**********99444444..33344.4457777776666 PP

                  E...EE.HHHHHHHHHHHHHHHHTTSSGTTTTSHHHHHHHHH.HTTEES-BBTTSBHHHHHHHHHHT-SSGGGS--HHHH CS
  Pkinase_Tyr 181 k...ft.sksDvWsfGvllwEiftlgespypglkneevlekl.kegkrlekpekcpeelyelmkkcweedpeeRptfsel 255
                      +     D W+ Gv+++  ++ g +py+  +++ ++e++ ++ +r  +pek+++ l+++++  ++++ + R t+ +l
   KOO20850.1 264 AsgtYDgRVVDLWAVGVTIFLWVC-GWTPYTAPTTALLMETIaNAPERAVAPEKTSPGLASVIEGLLTREVATRLTLVQL 342
                  5455442458**********6666.****************978899***************************999887 PP

>> IPK  Inositol polyphosphate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.6   0.0   4.8e-18   1.2e-14       2     196 ..     473     690 ..     472     691 .. 0.89

  Alignments for each domain:
  == domain 1  score: 54.6 bits;  conditional E-value: 4.8e-18
                 EEEE-TTTT-SSEEEEEEEESSSSS-TTST..............................CHHHHHHHHHHCCSTHHHHSEEEEEEEEEETTTTEEE.E CS
         IPK   2 lvLedltagfkkPcvlDvKlGtrtydedas..............................eekrekqqkkskettseslGfrilGmkvykeeedeyl.t 69 
                 +v+edl+ag+++Pc + + +Gtrt                                     ++ +++   ++ +++++lGfr+   k+  + + + l  
  KOO20850.1 473 IVMEDLVAGMTRPCAMALVMGTRTVTAADLaqgearadllravdeldpnsvmavererggLTQARYLAFLDARSSTSTLGFRLDSAKTMVNGKLDALpL 571
                 89*********************9987733458999************************9999999999999**************965555444414 PP

                 EEHHHHCT-SHH.HHHHHHHHCCCSSSSCCHHHHHHHCHHHHHHHHHHHHHCSHS...EEESSEEEEEEEETT......................SSEE CS
         IPK  70 vdkkygrslske.evkealkkFlsngkslrkdakaaskllerLqelkqvlesqes...lrfyssSLLfvyegdseasekaeekeaeeeeeeeskekkve 164
                  +      l++e +v+ a++kF++      +d+++a++l  +L++l+++l+++++   + f    LLfvy++                     ++++v+
  KOO20850.1 572 PEGVELDALREEsHVSAAIAKFVQ------HDTQIANALFLKLKTLLNALQQSKFfpkHAFLRTTLLFVYDDA--------------------NRANVQ 644
                 44444455665569*********9......8999*********************9*9**************9....................6789** PP

                 EEEE--TTEEE..............--TSS--HHHHHHHHHHHHHH CS
         IPK 165 vklIDFAhvvp..............tesggpDegyllGlksLikil 196
                 +++  F+ ++                + + +++gyl+G++sL++i+
  KOO20850.1 645 IRIMNFSAAYAlpegeavshdvpwdSTAECHEDGYLIGVHSLVRIM 690
                 **********99***********9888999*************997 PP

>> Kinase-like  Kinase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   0.0   5.7e-06     0.014     159     260 ..     200     302 ..     194     336 .. 0.68

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 5.7e-06
  Kinase-like 159 nLqakglvhgkftvdnllldekgg....lmlggfta..Lvragtkvvl.sevekgfaPpEllgsrggytrknktkmthkldaWqlGlviyriwclklP 249
                  +L+ + ++h +++++nlll +  +    l++ +f+   L    ++++  + +++ f+P   + ++ g      t     +d W++G++i+   c   P
   KOO20850.1 200 YLHMHAIIHRDIKPENLLLAKTPKlgqiLKIADFGTscLCEGDANAQRtAGTPAFFSPERCTTEASG------TYDGRVVDLWAVGVTIFLWVCGWTP 291
                  899****************876431123466666431144444443332444455555555455444......5556789**************9999 PP

  Kinase-like 250 ltlateeakee 260
                   t +t     e
   KOO20850.1 292 YTAPTTALLME 302
                  99888765555 PP

>> APH  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.6   0.0    0.0012       3.2     165     187 ..     203     227 ..     169     238 .. 0.72
   2 ?    4.4   0.1     0.012        31      90     161 ..     500     571 ..     427     586 .. 0.82

  Alignments for each domain:
  == domain 1  score: 7.6 bits;  conditional E-value: 0.0012
                 -EEEE-SS-SGGGEEEC....TTEE CS
         APH 165 ptvllHgDlhpgNllvd..pddgrv 187
                  + ++H+D++p Nll+   p  g++
  KOO20850.1 203 MHAIIHRDIKPENLLLAktPKLGQI 227
                 5789************955544555 PP

  == domain 2  score: 4.4 bits;  conditional E-value: 0.012
                 HHHHHHHHHHHHHCCHHCH.-STTTB-SHHCHTCCHHHHHHCHHHCCCGCCTCCHHHHHHHHHHHHHHHH-- CS
         APH  90 qlpellealgeflaalhqvdpaalpladflaqdlellrqlesatarllaselldlleeleeqvlaalaallp 161
                  + +++ea +++l+a+ ++dp++ +   +++  l+++r+l+   ar+  s l+ +l  +   v  +l+al +
  KOO20850.1 500 ADLAQGEARADLLRAVDELDPNSVMAVERERGGLTQARYLAFLDARSSTSTLGFRLDSAKTMVNGKLDALPL 571
                 556789999********************************9999999999988455444446666666665 PP

>> Pkinase_fungal  Fungal protein kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   2.4e-05     0.062     312     384 ..     191     258 ..     183     289 .. 0.78

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 2.4e-05
  Pkinase_fungal 312 lrDaIkghrsLflkagiLHrDiSenNilitdskkegerkglLiDLDlakelsddssesgarertGTleFmaie 384
                     lr+   g++ L+    i+HrDi  +N+l+  + k  ++   ++D+   + ++    +++a++  GT++F + e
      KOO20850.1 191 LRHLTMGLEYLH-MHAIIHRDIKPENLLLAKTPKL-GQILKIADFGTSCLCE---GDANAQRTAGTPAFFSPE 258
                     666677889999.899**************55444.5556667776666666...566667899****98855 PP

>> FTA2  Kinetochore Sim4 complex subunit FTA2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6   0.0    0.0021       5.3      23      62 ..      69     108 ..      44     141 .. 0.84
   2 ?    3.9   0.0     0.014        36     174     204 ..     187     217 ..     176     227 .. 0.86

  Alignments for each domain:
  == domain 1  score: 6.6 bits;  conditional E-value: 0.0021
        FTA2  23 diefleyLgkglhsiVlkvkirgkeYALKlFrfleaeele 62 
                  ++++  Lg+g+ + V+ ++  +  YA+K+ r+   ++l+
  KOO20850.1  69 GFKIVRPLGRGAFGEVFLAQQFDDHYAIKVLRKSALKKLH 108
                 578999************************9998776665 PP

  == domain 2  score: 3.9 bits;  conditional E-value: 0.014
        FTA2 174 evsqlpkllrdlkklhklgIvvrDlkeenyi 204
                 + s+l++l   l+ lh + I++rD+k+en++
  KOO20850.1 187 IWSYLRHLTMGLEYLHMHAIIHRDIKPENLL 217
                 56789999999*****************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (699 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       327  (0.0182386); expected 358.6 (0.02)
Passed bias filter:                      301  (0.0167884); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.60u 0.31s 00:00:00.90 Elapsed: 00:00:00.46
# Mc/sec: 4596.21
//
Query:       KOO20851.1  [L=154]
Description: fatty acid type 2 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.5e-06   27.1   5.5    4.8e-06   26.6   5.5    1.1  1  FA_desaturase  Fatty acid desaturase


Domain annotation for each model (and alignments):
>> FA_desaturase  Fatty acid desaturase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.6   5.5   2.7e-10   4.8e-06     183     249 ..      46     114 ..      41     117 .. 0.92

  Alignments for each domain:
  == domain 1  score: 26.6 bits;  conditional E-value: 2.7e-10
  FA_desaturase 183 veHyggdwgerqvetsasir.saswllnlltgnln.yHieHHlfPgvpwyrLpelhrrlrellpehglp 249
                    v H g+d+ +      ++i+  +++l ++l++ ++  H++HH+  ++p+y+ +++++++ +++p+ +l+
     KOO20851.1  46 VPHLGNDDFTYMRGAFHTIDrPYPKLIDWLHHRIGsTHVAHHIDCTIPHYHARAATDAIAAAFPKVYLH 114
                    5788888888888888999999******************************************98765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (154 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       285  (0.015896); expected 358.6 (0.02)
Passed bias filter:                      246  (0.0137208); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.24s 00:00:00.63 Elapsed: 00:00:00.40
# Mc/sec: 1152.29
//
Query:       KOO20852.1  [L=550]
Description: otu-like cysteine protease domain-containing protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.8e-06   27.1   0.0      9e-06   26.2   0.0    1.4  1  OTU       OTU-like cysteine protease
  ------ inclusion threshold ------
      0.041   14.4   0.1       0.38   11.3   0.0    2.1  2  PH_12     Pleckstrin homology domain


Domain annotation for each model (and alignments):
>> OTU  OTU-like cysteine protease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.2   0.0     1e-09     9e-06       3      83 ..     221     297 ..     219     324 .. 0.91

  Alignments for each domain:
  == domain 1  score: 26.2 bits;  conditional E-value: 1e-09
                 SS-HHHHHHHHCCCSS.SHCCHHHHHHHHHCHHHHHHTSSHHCCHHHHCCHHH.HHHHTTSTTHHHHHHHHHHHHHHCTS-E CS
         OTU   3 DGnCLlravsqqlwgvsdelrkakvseLreklaeylrehseelelfleeeeeg.ylkeiektaawggeleifalahiLrrpI 83 
                 DG C +r  sq l+     ++++++  +r++++e ++ +s  + l+++e+e + yl  ++    wg+el ++a a+   + +
  KOO20852.1 221 DGACQFRGFSQHLY-----GSQKYHLSIRHAVVEHMARESAYYGLMFDEDEFEpYLAGMRRSNTWGDELTLRAFADAYTVFV 297
                 9************9.....8888999**********************998879*********************9877655 PP

>> PH_12  Pleckstrin homology domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   4.2e-05      0.38      64     133 ..     403     478 ..     392     479 .. 0.68
   2 ?    0.5   0.0     0.094   8.4e+02      84     126 ..     493     534 ..     482     536 .. 0.78

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 4.2e-05
       PH_12  64 dlsdisevksgkeaphskesgksssslskksssklsfslitl.........skekellelvasseseaaeWlDGLsmLl 133
                 ++ +i +++ +++++++++ ++ +   +  +++ l+++++ +         + +k +l++ +++   +a W+ +L++Ll
  KOO20852.1 403 PVGSIMKLVGKNDVTTMTSLDEVT---NVIATEPLQYEVTMTvplqkeettALNKDTLDVRCTDDVSFAHWVAALNVLL 478
                 566666666666666666544333...33444444444444444555555699*************************8 PP

  == domain 2  score: 0.5 bits;  conditional E-value: 0.094
       PH_12  84 gksssslskksssklsfslitlskekellelvasseseaaeWl 126
                 ++       +s+  l+ +l+  +++ + +el a+ e+eaa Wl
  KOO20852.1 493 QERRARSLARSAPRLHKELLD-RETAAEAELKAQAEAEAARWL 534
                 444444467777888889999.999999**************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (550 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       507  (0.0282782); expected 358.6 (0.02)
Passed bias filter:                      319  (0.0177924); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.54u 0.23s 00:00:00.77 Elapsed: 00:00:00.42
# Mc/sec: 3927.97
//
Query:       KOO20853.1  [L=433]
Description: aspartate aminotransferase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.3e-84  283.1   0.0    3.8e-84  282.9   0.0    1.0  1  Aminotran_1_2  Aminotransferase class I and II


Domain annotation for each model (and alignments):
>> Aminotran_1_2  Aminotransferase class I and II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  282.9   0.0   2.1e-88   3.8e-84       3     363 .]      54     420 ..      52     420 .. 0.98

  Alignments for each domain:
  == domain 1  score: 282.9 bits;  conditional E-value: 2.1e-88
                    EEESSSSSTTSTTSS.HHHHHHHHHHHHHHHHHTSTTST-BTTHHHHHHHHHHHHHC..TCTTCHTTGGEGEEEESHHHHHHHHHHHHHH.HTTT- CS
  Aminotran_1_2   3 vinLgsneylgdsgk.ptlpevakaekegalaggtlneygpidglpeleealakflg..rseklklkreaavvvgsGagaliealifllk.lnpgd 94 
                    ++nL++++y++d+g   +lp+va ae++ +l+ g+ +ey pi+glp + +   kf+   ++ +lk+ r aav+++sG+ga++ a +f ++ l++g+
     KOO20853.1  54 KVNLAVGAYRDDAGLpFVLPSVAAAEAR-LLSRGEKKEYAPIEGLPGFIQLALKFAYgdDCAALKEGRIAAVQTLSGTGACRLAGEFYARfLPKGT 148
                    89*************99***********.***************************99*******************************977899* PP

                    EEEEEESS-THHHHHHHHTTSEEEEEEBEETTTTEE-HHHHHHHHTTHHCTTETEEEEEEESS-TTT--B--HHHHHHHHHHHHHTTEEEEEEETT CS
  Aminotran_1_2  95 eilvpdptyasyknilrlsggevvryplyseedfhldlealeealkeapegnkktkvilvesphNPtGtvatleeleklldlakkynlllfvDeaY 190
                    +i+v+dpt+++++ni +l+g+ev++y++ + ++ + d+e+l+++++ ap+g++   ++l++++hNPtG++++ e+++++ + + ++++++++D aY
     KOO20853.1 149 AIYVSDPTWGNHINIMQLAGLEVRKYRYLDRATQGFDFEGLLADIEAAPAGSI---FLLHACAHNPTGVDPSSEQWRTVSNAILRKGHHVLLDCAY 241
                    *****************************************************...**************************************** PP

                    TTCBSSSS..HTHHHHGGSTTSTTEEEEEESSSTTSSGGG-EEEEEEEH.......HHHHHHHHHHHHHTS..SHHHHHHHHHHHHHHHHHHH... CS
  Aminotran_1_2 191 agfvfgsl..davatranveeepnllivgslsKafGlaGeRvGyilgna.......avvsqlrklsrpfls..ssllqaavaaalsdallkqs... 272
                    +gf++g+   da a+r++++e+  ll+++s++K+fGl+GeRvG +++++       +v+sql+ ++rp++s  + +++ +v+++ls+a+l+++   
     KOO20853.1 242 QGFASGDAeaDAFAIRLFLDEGHSLLLAQSFAKNFGLYGERVGTLSVVCadaasagRVLSQLKCIVRPMYSspPIHGALIVNEVLSNAELRRQyyg 337
                    ******999999999********************************999********************************************99 PP

                    HHHHHHHHHHHHHHHHHHHHHHS....TEEEECCSCSSEEEEEETHHCHHHHHHHHHHTCTEEEEEGGGGTSTTEEEEECTTS-HHHHHHHHHHH CS
  Aminotran_1_2 273 eleemrqrlqkrrkelrdeLael....glkvlasqsgmflltdlsaetakelskkLleevgvyvtpgtsftvpgrlRitvAglteeeleelveal 363
                    +    ++r+ ++r +l +eLa+     +++++++q+gmf +t+++a+    ++++L+e++ +y+t+        ++Ri+++gl++ +l  +++a+
     KOO20853.1 338 DCAGLADRIGTMRLRLIEELAAVgsthDWSHVKNQIGMFAFTGMTAA----MCDELTERHAIYLTR--------DGRISLPGLNSGNLAFVASAI 420
                    99******************999**********************99....***************........***********9998777765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (433 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       209  (0.0116571); expected 358.6 (0.02)
Passed bias filter:                      203  (0.0113224); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.23s 00:00:00.69 Elapsed: 00:00:00.40
# Mc/sec: 3261.41
//
Query:       KOO20854.1  [L=755]
Description: acyl- dehydrogenase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.8e-39  135.4   5.8    2.3e-38  132.4   5.2    2.0  1  DUF1974        Domain of unknown function (DUF1974)
    6.7e-15   55.7   0.0    2.2e-14   54.1   0.0    1.9  2  Acyl-CoA_dh_N  Acyl-CoA dehydrogenase, N-terminal domain
    1.3e-13   51.5   0.6    1.3e-13   51.5   0.6    2.0  2  Acyl-CoA_dh_1  Acyl-CoA dehydrogenase, C-terminal domain
     0.0011   19.2   0.0      0.002   18.3   0.0    1.5  1  Acyl-CoA_dh_M  Acyl-CoA dehydrogenase, middle domain


Domain annotation for each model (and alignments):
>> DUF1974  Domain of unknown function (DUF1974)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  132.4   5.2   5.1e-42   2.3e-38       1     201 [.     464     675 ..     464     712 .. 0.86

  Alignments for each domain:
  == domain 1  score: 132.4 bits;  conditional E-value: 5.1e-42
     DUF1974   1 iRCHPYvlkemeaaqsedkekalkaFdkalfghigfvvsnalrslvlgltggrlasap.......vagetkryyrqlnrlSaafAllaDlallvLGGeL 92 
                 +RCHP++l  ++a+qs++  +a ++F + lf+ +g+v+sn   sl+ g+ ++  ++          ++ +k +  ql rlSa+fA++aD++ l+LGG L
  KOO20854.1 464 TRCHPHMLPAINALQSKE-PDAPAKFRTHLFKVLGHVFSNWGLSLTRGIGASISTALRskqayrdGDALVKYHEAQLLRLSANFAFAADVS-LTLGGRL 560
                 5*****************.68*********************999999666555444433345656667788899****************.79***** PP

     DUF1974  93 KrkerlsaRlgDvlSqLYlasavLkrfedegrqeedlplvhwalqdalaqaeealdellaNfpnrv...valllrllvfplgrra...kkpsDklkhev 185
                 K  e l +Rl D++S ++l  a+L++f+ + + e  ++l++ a+ +  ++a++al++  +Nfp+++    ++l+ + v plg+ +   ++p D+l+++v
  KOO20854.1 561 KFEELLMGRLSDAMSAIFLGYATLHHFQRNRHIEGLEALAESAMLQLEHEAQSALQAASENFPQPIgalGGWLMAAGVAPLGELMrpyRPPRDELTQKV 659
                 ***************************************************************986222579*********98665559********** PP

     DUF1974 186 aelllepseardrLta 201
                 a++l++ps++     +
  KOO20854.1 660 ARMLTTPSAVHAMFAE 675
                 ********99876655 PP

>> Acyl-CoA_dh_N  Acyl-CoA dehydrogenase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.1   0.0   4.9e-18   2.2e-14      14     112 ..      81     185 ..      73     186 .. 0.84
   2 ?   -3.7   0.0         4   1.8e+04      15      51 ..     694     729 ..     687     743 .. 0.61

  Alignments for each domain:
  == domain 1  score: 54.1 bits;  conditional E-value: 4.9e-18
                    HHHHHTHHHHHHHH.....HHTSGHHHHHHHHHHTTCTSTTS-GGGTS--S-HHHHHHHHHHHHHH-HHHHHHHHHHHHTTH.HHHHHHS-HHHHH CS
  Acyl-CoA_dh_N  14 faeeelaphaaewd.....eegefprelwkklaelGllgitvpeeygGagldyleaaivaeelaradaglalllgvhsslva.pailrfGteeqkr 103
                    f+++e+++ ++        +++  p e+w+ +    ++++ +p+e+gG+g+++++   v+ +l+ ++    ++++v +sl+  + ++r+Gt+eq+ 
     KOO20854.1  81 FLNNEVEELCTMLNdyqvtTNKDLPAEAWEYMRNKKFFAMKIPKEWGGLGFSTMAVSSVLAKLGSHCFDANATVAVPNSLGPgELLVRYGTDEQRG 176
                    6666666643333211242455799999*****************************************999*********559************ PP

                    HHHHHHHTT CS
  Acyl-CoA_dh_N 104 ryLpklasg 112
                     +Lp+la+g
     KOO20854.1 177 YFLPRLADG 185
                    *******98 PP

  == domain 2  score: -3.7 bits;  conditional E-value: 4
                    HHHHTHHHHHHHHHHTSGHHHHHHHHHHTTCTSTTS- CS
  Acyl-CoA_dh_N  15 aeeelaphaaewdeegefprelwkklaelGllgitvp 51 
                    ae ++ ++a++++ ++ ++ +++++l+ l + g t p
     KOO20854.1 694 AESKVLQQAEQMR-DELVQVDVHQALGPLEVEGYTRP 729
                    5555655566664.33444457777776666555555 PP

>> Acyl-CoA_dh_1  Acyl-CoA dehydrogenase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.5   0.6   2.8e-17   1.3e-13       3     141 ..     312     453 ..     310     462 .. 0.94
   2 ?   -4.1   1.1       3.6   1.6e+04      56     107 ..     658     710 ..     655     712 .. 0.58

  Alignments for each domain:
  == domain 1  score: 51.5 bits;  conditional E-value: 2.8e-17
                    HHHHHTTTT--S-.----..-SHHHHHHHHHHHHHHHTSB-CC-BGGGSHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHH CS
  Acyl-CoA_dh_1   3 GfrvametlnheR.lavaaaalglarraleealeyarrrkafgkplidhqlvreklaemaaeleaarllvyraaealdagkpdraeasmaKlfase 97 
                    G++ + e l+ +R +++ a+alg+ar +   + +y+r rk+f  p++++  ++e la+   e   + + ++ + + +d+++ + + +s++K  ++e
     KOO20854.1 312 GWHMFVECLAEGRgVSLPAGALGAARTVCAGVGAYSRVRKQFRVPIAEFGGIQEALARAGRESYIVLAGTELTNAIIDNHEAPMVLSSIMKQSCTE 407
                    9************446779***************************************************************************** PP

                    HHHHHHHHHHHHHGGGTTSGGGH..HHHHHHHTHHHHHSSS-HHHH CS
  Acyl-CoA_dh_1  98 laqevadlamqllGgaGyleeyp..verlyrdarvlrigeGtseiq 141
                      ++++++ m++lGgaG++++ +  v  +y+ + v    eG++ + 
     KOO20854.1 408 RGRRIITDGMDILGGAGISQGKAnfVGSAYMSMPVAITVEGANIMT 453
                    ******************9777778**********99999998655 PP

  == domain 2  score: -4.1 bits;  conditional E-value: 3.6
                    HHHHHHHHHHHHHHHHHHHHH--------.HHHHHHHHHHHHHHHHHHHHHHH CS
  Acyl-CoA_dh_1  56 klaemaaeleaarllvyraaealdagkpd.raeasmaKlfaselaqevadlam 107
                    k+a+m +   a+ ++  + a ++  + ++ r ea +a  ++ + a+++ d+ +
     KOO20854.1 658 KVARMLTTPSAVHAMFAENADRILMACKKeRREATIAESKVLQQAEQMRDELV 710
                    66777777777777766666655555555466666666555555555555555 PP

>> Acyl-CoA_dh_M  Acyl-CoA dehydrogenase, middle domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.3   0.0   4.4e-07     0.002       1      84 [.     190     281 ..     190     295 .. 0.73

  Alignments for each domain:
  == domain 1  score: 18.3 bits;  conditional E-value: 4.4e-07
                    EEE---SS-SS-GGG---EE..EEETT.EEEEE..EEEEEEETTTT-SEEEEEEE....TS---.....----EEEEEEE..GGGEEE-----BSS CS
  Acyl-CoA_dh_M   1 afalTEpqaGsdvasvktta..aerdggeyvln..GeKiwitnaaiatlalvlar....tekpd.....rarglslflvprdapgvsvrrieeklG 83 
                    +f+lT p +Gsd++s+  +   +e+ +g   ++   eK++it a+ a ++ +       +   +     +++g++++l++r+++g+ +++ +  + 
     KOO20854.1 190 CFGLTGPHSGSDATSLIGSYgtVEKRNGVLGVRctFEKRYITLAPVAGVVGIGLDlkdpN---NllggqGSEGFTVALLERGHEGLNMGPRH--MP 280
                    9************99873333477777775555226**************8888765441...24555679****************99875..33 PP

                    - CS
  Acyl-CoA_dh_M  84 l 84 
                    l
     KOO20854.1 281 L 281
                    3 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (755 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       501  (0.0279436); expected 358.6 (0.02)
Passed bias filter:                      441  (0.024597); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.63u 0.28s 00:00:00.91 Elapsed: 00:00:00.42
# Mc/sec: 5378.72
//
Query:       KOO20855.1  [L=494]
Description: kynurenine 3-monooxygenase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.8e-21   75.7   0.3    7.4e-21   74.8   0.3    1.5  1  FAD_binding_3  FAD binding domain
    3.8e-06   27.0   1.1    9.4e-06   25.8   0.3    2.2  2  NAD_binding_8  NAD(P)-binding Rossmann-like domain
     0.0044   16.6   1.3     0.0062   16.2   0.4    1.8  1  DAO            FAD dependent oxidoreductase
     0.0045   15.7   0.0     0.0071   15.1   0.0    1.2  1  HI0933_like    HI0933-like protein
  ------ inclusion threshold ------
      0.028   13.5   0.6        0.4    9.7   0.0    2.3  2  FAD_binding_2  FAD binding domain
      0.032   14.8   0.0      0.064   13.8   0.0    1.5  1  Pyr_redox      Pyridine nucleotide-disulphide oxidoreductase
       0.04   13.9   0.0      0.084   12.9   0.0    1.5  1  NAD_binding_9  FAD-NAD(P)-binding
      0.059   12.4   1.1        0.1   11.6   0.0    1.8  2  Lycopene_cycl  Lycopene cyclase protein
        0.1   13.1   0.0       0.24   11.9   0.0    1.8  1  NAD_binding_7  Putative NAD(P)-binding
       0.11   12.1   0.0       0.23   11.1   0.0    1.5  1  ApbA           Ketopantoate reductase PanE/ApbA


Domain annotation for each model (and alignments):
>> FAD_binding_3  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   74.8   0.3   4.1e-24   7.4e-21       3     347 ..      36     408 ..      34     410 .. 0.67

  Alignments for each domain:
  == domain 1  score: 74.8 bits;  conditional E-value: 4.1e-24
                    EEEEE--SHHHHHHHHHHHHTTHHEEEEESSSSSCCSS....S-....-EEEHHHHHHHHHTT-HHHHHHHSEECCCCEEEEEEECCCCCEEEEEH CS
  FAD_binding_3   3 dVlIVGaGpaGlmlallLseaGvrvvlvekrsttvvlp....ra....dglnqrtmellrqlGledrilaegapnelmgealynelsdtpkaradl 90 
                     ++IVG+G +Gl+la+ L   G  v l e r++         ra     gl  rt     +  l++ ++a g  ++ ++ +l          + dl
     KOO20855.1  36 RTAIVGGGASGLLLAHRLLDEGATVSLFESRADPRHSNslegRAyalgLGLRGRTALRTVDERLWKDVAASGFASDRFTLHLPFG-------SFDL 124
                    578**************************99876443335556522224555565444445579999999998888777666666.......5555 PP

                    H.CHHCST-CEE--HHHHHHHHHHHHHHHT.....EEETCSEEEECCEECCCCCCCEEEECCTTEEEEEEE.EEEEE--GTT-HHHHHHTGG...E CS
  FAD_binding_3  91 e.lesspervtvypqteleriLvehaeerg.....lqvrfktevesleqdeegvtaevrdketgeeetvra.kYlvGaDGgrStvrktlgie...f 176
                       +   e   ++ qt l  ++++++eer      l ++f+ +ve++ + +    a+     +g    ++  + + G+DG++S+vr+++  +   f
     KOO20855.1 125 RkPDPAQEPSILIYQTALCSAMLSSLEERHaasgrLFMNFECRVETVDART---GAVCVAPLAGSAPAIETfDLVCGCDGVNSAVRAAVAEQslaF 217
                    522333334444557766666666555554311033344444444444443...44455666666666654389*************998774324 PP

                    EEEEEEEEEEEEEEEEEC-SCCCTTCCEEEEECCTTEE............EEEECCE.TEEE..EEEEEECCE-GGGSCCCHHHHHHHHHHHHHHT CS
  FAD_binding_3 177 egeetvyeagvldvlfdadlsdiveplvlilsaesrgv............mviPlen.tler..fyvqvearaekeersekfteeevkarlreivg 257
                    ++e t+   g+l+vl  + ++++  p  + l +  +g+            ++i+++  t +   +   ++ +a  + ++++++ +     + ++ +
     KOO20855.1 218 NAELTT-LPGSLKVLRLDAMPSTLTPDAVHLVPGAGGMaafleptangacALISWQTpTGRSdgRSDAIDPGALTDADETRRFLASSFPLISTALN 312
                    444444.45888888777666666663444444444444445555555567777776532221144455555556666777777777888889999 PP

                    TSSCEEEEEEEEEEEEEEEEESSSEETTEEE-GGGTEEE-STTSHHHHHHHHHHHHHHHHHHHHH......TTSS-GGGGHHHHHHHHHHHHHHHH CS
  FAD_binding_3 258 ektldveieevsawtvaqrvaekyrkgrvflaGDAaHihpPtgGqGlNtaiqDavnLawkLaavl......kGeAkeelLdtYeeerravaqavvd 347
                    + ++ +++   ++ + ++  +++y+ g+v l GDAaH +  + GqG Nta+ Da  La+ L ++       +  A  + L  Y++er++ + a++d
     KOO20855.1 313 QTDVGAQFVAQRISRASTVRCNTYHFGQVVLLGDAAHSTGGASGQGCNTALADAAALATMLTEARarrrtqTPAAVAAALARYSRERLPEGHALLD 408
                    999999*******************************************************987511111144578899**********9999987 PP

>> NAD_binding_8  NAD(P)-binding Rossmann-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.8   0.3   5.3e-09   9.4e-06       1      31 [.      39      69 ..      39      96 .. 0.89
   2 ?   -2.3   0.0         3   5.5e+03      22      35 ..     342     355 ..     328     373 .. 0.71

  Alignments for each domain:
  == domain 1  score: 25.8 bits;  conditional E-value: 5.3e-09
                   EE--SHHHHHHHHHHHCCTEEEEEE-SSSSS CS
  NAD_binding_8  1 IvGaGlsGlvaAylLakagfdvlllekrdrl 31
                   IvG+G+sGl++A++L ++g+ v l+e+r ++
     KOO20855.1 39 IVGGGASGLLLAHRLLDEGATVSLFESRADP 69
                   9**************************9987 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 3
                    EEEE-SSSSSSGGG CS
  NAD_binding_8  22 vlllekrdrlGGra 35 
                    vll ++++++GG +
     KOO20855.1 342 VLLGDAAHSTGGAS 355
                    55556666666654 PP

>> DAO  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.4   3.4e-06    0.0062       2      48 ..      37      84 ..      36     156 .. 0.81

  Alignments for each domain:
  == domain 1  score: 16.2 bits;  conditional E-value: 3.4e-06
                EEEECTSHHHHHHHHHHHHTT..EEEEESSSSTTSSGGGSSEEEEESSS CS
         DAO  2 vviiGGGiiGlstAyeLarrg..VtllekgdiagsgaSgrnsgllhsgl 48
                 +i+GGG  Gl  A+ L  +g  V l+e++ ++  ++ +  ++  + gl
  KOO20855.1 37 TAIVGGGASGLLLAHRLLDEGatVSLFESRADPR-HSNSLEGRAYALGL 84
                68***************99999********9998.77777766666666 PP

>> HI0933_like  HI0933-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.0   3.9e-06    0.0071       3      33 ..      37      67 ..      35      72 .. 0.91

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 3.9e-06
                 EEEE--SHHHHHHHHHHHHTT--EEEE-SSS CS
  HI0933_like  3 viviGgGaAGlmaAisaakrgkrVlllekak 33
                 ++++GgGa+Gl+ A ++ ++g+ V l+e+  
   KOO20855.1 37 TAIVGGGASGLLLAHRLLDEGATVSLFESRA 67
                 79**************************865 PP

>> FAD_binding_2  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   0.0   0.00022       0.4       3      30 ..      38      65 ..      36      77 .. 0.90
   2 ?    1.7   0.1      0.06   1.1e+02      86     167 ..     290     392 ..     239     408 .. 0.67

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 0.00022
                   EEE--SHHHHHHHHHHHHTTT-EEEEES CS
  FAD_binding_2  3 iViGsGlAGLaAAleaaeaGlkvavvek 30
                    ++G+G++GL  A+++ ++G++v + e 
     KOO20855.1 38 AIVGGGASGLLLAHRLLDEGATVSLFES 65
                   69********************999875 PP

  == domain 2  score: 1.7 bits;  conditional E-value: 0.06
                    HHTHHHHHHHHHHTT----BCCTSSB-EEE-TT-SST........................EEEE-.STT-.......HHHHHHHHHHHHHHTCTE CS
  FAD_binding_2  86 veaapeavdeLeelgvpfsrtedgpvdvrelGglsat........................artlhdaadarr.etlvtghallarlvesarkagv 156
                    ++ a e +++L++ +  +s+    +++++++G++                           a +  + a  +  +t     a la+++++ar++  
     KOO20855.1 290 LTDADETRRFLASSFPLIST----ALNQTDVGAQFVAqrisrastvrcntyhfgqvvllgdAAHSTGGASGQGcNTALADAAALATMLTEARARRR 381
                    45899999999999999999....999999999998877777777777777777777777744444444545556666666666666666666655 PP

                    EEEESEEEEEE CS
  FAD_binding_2 157 dfqerteadeL 167
                    +  + + a++L
     KOO20855.1 382 TQTPAAVAAAL 392
                    55555555555 PP

>> Pyr_redox  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.0   3.5e-05     0.064       2      35 ..      37      70 ..      36      96 .. 0.89

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 3.5e-05
                EEEECSSHHHHHHHHHHHHTTSEEEEEESSSSSS CS
   Pyr_redox  2 vvvvGgGyiglElAgalaelgkkVtvversdkll 35
                 ++vGgG +gl lA  l + g+ V+++e +  ++
  KOO20855.1 37 TAIVGGGASGLLLAHRLLDEGATVSLFESRADPR 70
                79**************************998877 PP

>> NAD_binding_9  FAD-NAD(P)-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   4.7e-05     0.084       1      33 [.      38      65 ..      38      80 .. 0.84

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 4.7e-05
  NAD_binding_9  1 aivGaGprGlavlerLlarakkkspleitlfdp 33
                   aivG+G++Gl+++ rLl++       ++ lf+ 
     KOO20855.1 38 AIVGGGASGLLLAHRLLDEG-----ATVSLFES 65
                   8****************994.....66666665 PP

>> Lycopene_cycl  Lycopene cyclase protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   5.7e-05       0.1       3      36 ..      38      69 ..      37     111 .. 0.84
   2 ?   -1.9   0.2      0.72   1.3e+03     277     299 ..     360     384 ..     337     410 .. 0.51

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 5.7e-05
  Lycopene_cycl  3 vviGaGpAglslAarlteakpglkvvlieaspsl 36
                   +++G+G+ gl+lA+rl     g  v l e+ +++
     KOO20855.1 38 AIVGGGASGLLLAHRL--LDEGATVSLFESRADP 69
                   69**************..7777788888777766 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 0.72
  Lycopene_cycl 277 arslaeapllasaiaaalres..sl 299
                      +la a  la  + +a +++  ++
     KOO20855.1 360 NTALADAAALATMLTEARARRrtQT 384
                    4555555544444444333221222 PP

>> NAD_binding_7  Putative NAD(P)-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   0.00013      0.24       3      41 ..      30      68 ..      29     217 .. 0.82

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 0.00013
  NAD_binding_7  3 ldlkgkkvlvvGgGevAarkvrklleagakvtvvapevk 41
                   + l+g +  +vGgG  ++  +++ll++ga+v +   +  
     KOO20855.1 30 VALEGVRTAIVGGGASGLLLAHRLLDEGATVSLFESRAD 68
                   6789999************************99877753 PP

>> ApbA  Ketopantoate reductase PanE/ApbA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   0.00013      0.23       2      29 ..      38      65 ..      37      78 .. 0.88

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00013
                EEES-SHHHHHHHHHHHHHTHCEEEE-S CS
        ApbA  2 ailGaGaiGsllaakLakagadvtlilr 29
                ai+G Ga G lla++L   ga+v l   
  KOO20855.1 38 AIVGGGASGLLLAHRLLDEGATVSLFES 65
                7**********************98755 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (494 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       459  (0.025601); expected 358.6 (0.02)
Passed bias filter:                      333  (0.0185733); expected 358.6 (0.02)
Passed Vit filter:                        49  (0.002733); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.56u 0.26s 00:00:00.82 Elapsed: 00:00:00.42
# Mc/sec: 3566.78
//
Query:       KOO20856.1  [L=253]
Description: hypothetical protein Ctob_000122 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (253 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       541  (0.0301746); expected 358.6 (0.02)
Passed bias filter:                      462  (0.0257683); expected 358.6 (0.02)
Passed Vit filter:                        49  (0.002733); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.46u 0.25s 00:00:00.71 Elapsed: 00:00:00.42
# Mc/sec: 1796.15
//
Query:       KOO20857.1  [L=178]
Description: flavodoxin nitric oxide synthase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    0.00032   20.5   0.1    0.00072   19.3   0.1    1.6  1  FMN_red       NADPH-dependent FMN reductase
    0.00061   19.6   0.0    0.00089   19.0   0.0    1.3  1  Flavodoxin_2  Flavodoxin-like fold


Domain annotation for each model (and alignments):
>> FMN_red  NADPH-dependent FMN reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.3   0.1     8e-08   0.00072      60     132 ..      42     124 ..       4     136 .. 0.84

  Alignments for each domain:
  == domain 1  score: 19.3 bits;  conditional E-value: 8e-08
                 SHHHHHHHHHHHH-SCEEEEEEECTTCE-HHHHHHHHCHT-............SSCHCCTT-EEEEEEE-SSTTTTHHHHHHHH CS
     FMN_red  60 sddvaellekiaaadaliivtPeYngsysgllKnalDrlsr...........trgkkelrgKpvalvavgggrrgglraeeqlr 132
                  ++ ++ +e + ++d+ +++ Pe  +++sg +  ++ r+ +             ++  l g+p +l++++g+ +g+++a++ +r
  KOO20857.1  42 RAAGEATVEDLLSSDGYLFCAPENLAMVSGEMAEFFQRVYYhvfdthesssgYGESSRLLGRPYGLAVAAGS-DGTSAARQVAR 124
                 566788999******************************88*****99999888888899999999977765.88877776655 PP

>> Flavodoxin_2  Flavodoxin-like fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.0   0.0   9.9e-08   0.00089      67     141 ..      43     118 ..       1     127 [. 0.78

  Alignments for each domain:
  == domain 1  score: 19.0 bits;  conditional E-value: 9.9e-08
                   HHHHH.HHHHHCSSEEEEEEE-BTTB--HHHHHHHHHHS-TTT.SCEETTCS.SCCCCTTTTSEEEEEEEESS-GGGS CS
  Flavodoxin_2  67 veseq.iekllaadaivlqfPlwwfgvPailKgwiDrvltagf.afyteegg.egrgggLkgkkalvivttGgpeesy 141
                   ++ e+ +e+ll++d +++ +P +  +v+  + +++ rv+ + f ++  e +  +g++ +L+g+++ ++v++G+++ s 
    KOO20857.1  43 AAGEAtVEDLLSSDGYLFCAPENLAMVSGEMAEFFQRVYYHVFdTH--ESSSgYGESSRLLGRPYGLAVAAGSDGTSA 118
                   4456666*******************************88877444..555558999***************997664 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (178 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       311  (0.0173462); expected 358.6 (0.02)
Passed bias filter:                      287  (0.0160076); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.39u 0.24s 00:00:00.63 Elapsed: 00:00:00.38
# Mc/sec: 1394.19
//
Query:       KOO20858.1  [L=725]
Description: 1-deoxy-d-xylulose-5-phosphate synthase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   1.3e-109  365.7   0.0     3e-108  361.1   0.0    2.1  2  DXP_synthase_N   1-deoxy-D-xylulose-5-phosphate synthase
    2.6e-41  141.2   0.0    5.8e-41  140.1   0.0    1.6  1  Transket_pyr     Transketolase, pyrimidine binding domain
    6.2e-24   84.2   0.4    1.6e-23   82.9   0.1    1.8  2  Transketolase_C  Transketolase, C-terminal domain
    4.3e-06   26.6   0.2    1.6e-05   24.7   0.2    1.9  2  TPP_enzyme_C     Thiamine pyrophosphate enzyme, C-terminal TP
      1e-05   24.6   0.1    1.8e-05   23.8   0.1    1.3  1  E1_dh            Dehydrogenase E1 component
    3.6e-05   22.9   0.0       0.25   10.2   0.0    3.2  3  Transketolase_N  Transketolase, thiamine diphosphate binding 


Domain annotation for each model (and alignments):
>> DXP_synthase_N  1-deoxy-D-xylulose-5-phosphate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  361.1   0.0    1e-111    3e-108       1     273 []      56     340 ..      56     340 .. 0.98
   2 ?    2.3   0.0     0.026        79      51      82 ..     447     479 ..     420     484 .. 0.72

  Alignments for each domain:
  == domain 1  score: 361.1 bits;  conditional E-value: 1e-111
  DXP_synthase_N   1 LekinspedlkklskeeleelaeelrefliesvsktggHlasnLgvveLtlalhyvfdtpkDklvwDvgHqaYvhKiltgRkdkfktlrqkgGls 95 
                     L++++ p+d+k ++ +el++l++elr ++i++vsktggHl+s+LgvveLt+alhyvf+tp+D +++Dv+Hq Y+hKiltgR+d+++tlrq+gGls
      KOO20858.1  56 LDSVQIPADIKGFTIAELKQLSNELRWETINAVSKTGGHLGSSLGVVELTVALHYVFNTPEDPIIFDVSHQVYPHKILTGRRDRMHTLRQAGGLS 150
                     7899******************************************************************************************* PP

  DXP_synthase_N  96 gfpkrsEseyDafeagHsstsisaalGlavardlkgekkkvvaviGDgaltgGmafealnnigelkkkllvilNdNemsisk..........nvG 180
                     gf krsEseyD+f+agHs+tsisaalG+ava dl+g++++ va+iGDga+tgGma+ea+nn++ l+++++v++NdN ++  +          + G
      KOO20858.1 151 GFAKRSESEYDVFGAGHSTTSISAALGMAVAFDLQGRQRNSVAIIGDGAITGGMAYEAMNNAAYLNSRVIVVYNDNGQVSLPtgepsaggtgPAG 245
                     ******************************************************************************99999************ PP

  DXP_synthase_N 181 alskylskllsskayeklkkevkkllkkigkklaelakklkeslkellvpgtlfeelgfkYlGpidGhdleelikvleevkkl..kgpvllhvvt 273
                     +ls+y ++l++sk ++++++++k++ k +  +++++  k++e ++++++ gtlfeelgf Y+Gp+dGhdl++l+ +le++++   ++pvllhv t
      KOO20858.1 246 SLSAYTTRLIASKPFQTFRDTAKTINKLFPAEIQQANAKIDEYARGMVTGGTLFEELGFYYIGPVDGHDLDNLVPILENIRDRegSQPVLLHVKT 340
                     ***************************99****************************************************983356******87 PP

  == domain 2  score: 2.3 bits;  conditional E-value: 0.026
  DXP_synthase_N  51 lalhyvf.dtpkDklvwDvgHqaYvhKiltgRk 82 
                      a++  f +   D++++Dv+ q  + +++ +R+
      KOO20858.1 447 CAIYSTFmQRAYDQIIHDVAIQKLPVRMILDRA 479
                     688888734568***********9999999986 PP

>> Transket_pyr  Transketolase, pyrimidine binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  140.1   0.0   1.9e-44   5.8e-41       3     174 ..     377     538 ..     375     540 .. 0.97

  Alignments for each domain:
  == domain 1  score: 140.1 bits;  conditional E-value: 1.9e-44
                   EEHHHHHHHHHHHHHCTTTTEEEEESSTHHHHTTCHCCHHEGGTTEGEEE--S-HHHHHHHHHHHHHHCTTEEEEEEEEHHHHGGGHHGGHHHHHCH CS
  Transket_pyr   3 iawrkaeaealaellkedpevvligaDvaggtfsvrkgllhdqgegrvidsgisEqavlgfavGaalagpllviveaqFgdFangAqiyadqairsg 99 
                   +++++++a++l  ++++d +vv+i+a++ ggt+   +g+++++   r +d+gi+Eq++++fa+G+a++g  l++++a++++F++    +a+++i+++
    KOO20858.1 377 PSYTAVFADTLVDIAATDRSVVAITAAMPGGTGIDKFGKRFPK---RTFDVGIAEQHAVTFAAGMAVEG--LKPFCAIYSTFMQ----RAYDQIIHD 464
                   78999**************************************...***********************..*************....********* PP

                   HHHHT--EE.EEESBSGGGSTTGTTTSBSSHHHHHHTSTTEEEE--SSHHHHHHHHHHHHHSSS.SEEEEEE-SSE CS
  Transket_pyr 100 eakgklkvg.vvtrlpigvgedGpehqsaeleaflrlipglkvvrPsdpaetkhllrrairredrkPvvlrlpksl 174
                   +a +kl+v  +++r+++ vg dGp+h++ +++++l +ipg+ +++Psd++e+++++++ ++ + + P++lr+p+++
    KOO20858.1 465 VAIQKLPVRmILDRAGL-VGNDGPTHHGSFDLSYLGCIPGIVICAPSDEVELRNMVQTVYTLD-NIPSALRFPRGS 538
                   *****************.*******************************************75.89*******975 PP

>> Transketolase_C  Transketolase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.0       1.8   5.3e+03      64      81 ..     192     209 ..     186     222 .. 0.47
   2 !   82.9   0.1   5.3e-27   1.6e-23       7     124 .]     577     697 ..     568     697 .. 0.95

  Alignments for each domain:
  == domain 1  score: -2.8 bits;  conditional E-value: 1.8
                      EEEEEEEESTTSHHHHHH CS
  Transketolase_C  64 lvvveeavkrgGigseva 81 
                      + ++ +++++gG++ e +
       KOO20858.1 192 VAIIGDGAITGGMAYEAM 209
                      344444444444443332 PP

  == domain 2  score: 82.9 bits;  conditional E-value: 5.3e-27
                      ETTSSEEEEEETTHHHHHHHHHHHHHTT..TTCEEEEE-SEEESHHHHHHHHHHHHHSEEEEEEEEESTTSHHHHHHHHHHH.CCCTTCSSEEE CS
  Transketolase_C   7 regkdvtlvayGsmveealeAaeeLeke..gisaeVvdlrtvkplDketilesvkktgrlvvveeavkrgGigsevaaalae.eafdgldapvk 97 
                      +  ++v++++ G+ +  a+eAa +Le+    ++++V d+r++kplD+e+i++++k+++ l++vee+++ gG+g++v+++la   a+d+  ++v+
       KOO20858.1 577 KASSKVCFLTIGTRLAPAVEAARRLEASdpSVGVTVADARWMKPLDTELIDKLAKEHDVLITVEENAI-GGFGDHVLHYLALsGALDQGTVKVR 669
                      56899***********************99999********************************777.*************99********** PP

                      EEEE-SS.SSSSGHHHHHHHTT-SHHHH CS
  Transketolase_C  98 rvggpdv.iepgsaeelekafgldaeki 124
                       +++pd  ie +++ e+++++gl++e i
       KOO20858.1 670 PMVLPDKyIEAANQSEQYEEAGLTSEYI 697
                      ************************9865 PP

>> TPP_enzyme_C  Thiamine pyrophosphate enzyme, C-terminal TPP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.7   0.2   5.3e-09   1.6e-05      26      97 ..     164     241 ..     146     286 .. 0.79
   2 ?   -2.8   0.0       1.7     5e+03      28      84 ..     585     644 ..     577     648 .. 0.70

  Alignments for each domain:
  == domain 1  score: 24.7 bits;  conditional E-value: 5.3e-09
                   TTS-TTTHHHHHHHHHHH....STTSEEEEEEEHHH..HHHTGGGHHHHHHTT-SEEEEEEE-SBCCCHHHHHHHHTC CS
  TPP_enzyme_C  26 glgtmGyglpaAiGakla....kpdrevvaivGDGg..flmilqelatavrrnlpitvvvlnNegygmtggqqepfgg 97 
                   g g+   +++aA+G+++a     ++r+ vai+GDG+    m  +++ +a++ n  ++vv  +N+   +  g+++  g 
    KOO20858.1 164 GAGHSTTSISAALGMAVAfdlqGRQRNSVAIIGDGAitGGMAYEAMNNAAYLNSRVIVVYNDNGQVSLPTGEPSAGGT 241
                   56666678889999998544423479*********96456779********************999888888666554 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 1.7
                   S-TTTHHHHHHHHHH..HSTTSEEEEEEEHHHHHHT.GGGHHHHHHTT-SEEEEEEE-SB CS
  TPP_enzyme_C  28 gtmGyglpaAiGakl..akpdrevvaivGDGgflmi.lqelatavrrnlpitvvvlnNeg 84 
                    t+G  l+ A+ a++   + d  v ++v D   +    +el+    + +++++ v  N++
    KOO20858.1 585 LTIGTRLAPAVEAARrlEASDPSVGVTVADARWMKPlDTELIDKLAKEHDVLITVEENAI 644
                   566777766666666432346778888888888888558888888888888888887765 PP

>> E1_dh  Dehydrogenase E1 component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.8   0.1   6.1e-09   1.8e-05     101     161 ..     166     226 ..     126     237 .. 0.85

  Alignments for each domain:
  == domain 1  score: 23.8 bits;  conditional E-value: 6.1e-09
                 SSTTTHHHHHHHHHHHHHHHTS---EEEEEEGGGTT-HHHHHHHHHHHHTT--EEEEEEEE CS
       E1_dh 101 givgaqvplvaGialaakiegkkevailliGDgAanqGdvyealnlaalwklpvifvveNN 161
                 g +++  + + G+a+a   +g ++ ++++iGDgA   G +yea+n aa  +  vi v + N
  KOO20858.1 166 GHSTTSISAALGMAVAFDLQGRQRNSVAIIGDGAITGGMAYEAMNNAAYLNSRVIVVYNDN 226
                 44455555556***********************99******************9998777 PP

>> Transketolase_N  Transketolase, thiamine diphosphate binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.2   0.0     0.011        34       4      50 ..      75     118 ..      73     127 .. 0.79
   2 !   10.2   0.0   8.4e-05      0.25     148     186 ..     192     230 ..     171     239 .. 0.84
   3 !    5.3   0.0    0.0026       7.9     206     262 ..     302     360 ..     294     381 .. 0.81

  Alignments for each domain:
  == domain 1  score: 3.2 bits;  conditional E-value: 0.011
                      HHHHHHHHHHHHHHHHHT-S--HHHHHHHHHHHHHHHHT--B-TTBT CS
  Transketolase_N   4 kavnaiRvLavDavekaksGhPGaplgladiaevlfkkllkhnPndp 50 
                      ++ n +R  +++av+k  +Gh G++lg+++++ +l+     + P+dp
       KOO20858.1  75 QLSNELRWETINAVSKT-GGHLGSSLGVVELTVALHYV--FNTPEDP 118
                      56788899999999986.7************9999754..3446665 PP

  == domain 2  score: 10.2 bits;  conditional E-value: 8.4e-05
                      EEEEEHHHHHSHHHHHHHHHHHHTT-TTEEEEEEES.SEE CS
  Transketolase_N 148 yvilgDgclmeGvsseasslagtlkLgkLivlyDdn.kis 186
                       +i+gDg +  G++ ea++ a+ l+  ++iv+y+dn ++s
       KOO20858.1 192 VAIIGDGAITGGMAYEAMNNAAYLNS-RVIVVYNDNgQVS 230
                      579********************995.6777776662565 PP

  == domain 3  score: 5.3 bits;  conditional E-value: 0.0026
                      TT-EEEEETTTT-HHHHHHHHHHHHH.-TTS-EEEEEE--TTTTST.TTTTSGGGTSS- CS
  Transketolase_N 206 ygWhvievedgedveaikaaieeaka.ekdkPsliklrtviGygsp.akagtedvhGap 262
                       g+  i   dg+d+ ++   +e+ +  e  +P l++++t  G g p a+a + + hG p
       KOO20858.1 302 LGFYYIGPVDGHDLDNLVPILENIRDrEGSQPVLLHVKTDKGKGYPpAEAASDKYHGVP 360
                      56666667899*******9999998615579*************86267778899*987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (725 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       376  (0.0209716); expected 358.6 (0.02)
Passed bias filter:                      355  (0.0198003); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.54u 0.26s 00:00:00.80 Elapsed: 00:00:00.39
# Mc/sec: 5617.10
//
Query:       KOO20859.1  [L=1069]
Description: regulator of nonsense transcripts 1-like protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    5.4e-61  205.7   0.0    1.6e-60  204.2   0.0    1.8  2  AAA_12         AAA domain
    1.5e-53  180.8   0.5    4.6e-53  179.3   0.2    1.9  2  UPF1_Zn_bind   RNA helicase (UPF2 interacting domain)
    3.1e-49  168.1   3.8    5.3e-30  105.1   0.5    2.3  2  AAA_11         AAA domain
    3.6e-29  100.8   0.0    7.2e-29   99.9   0.0    1.5  1  DUF5599        Domain of unknown function (DUF5599)
    1.4e-13   51.0   0.4    4.6e-12   46.1   0.4    2.4  1  AAA_30         AAA domain
    2.6e-10   40.8   0.1    8.7e-10   39.1   0.1    1.9  1  AAA_19         AAA domain
    1.2e-05   24.8   1.5    8.9e-05   21.9   0.0    2.7  3  DUF2075        Uncharacterized conserved protein (DUF2075)
    2.5e-05   24.3   0.0    4.9e-05   23.4   0.0    1.4  1  ResIII         Type III restriction enzyme, res subunit
     0.0006   19.7   0.1     0.0014   18.5   0.0    1.7  1  Helicase_RecD  Helicase
     0.0031   17.0   0.1     0.0065   15.9   0.1    1.5  1  PhoH           PhoH-like protein
     0.0048   16.7   0.0     0.0083   15.9   0.0    1.4  1  DEAD           DEAD/DEAH box helicase
     0.0062   16.2   0.0       0.01   15.5   0.0    1.3  1  SRP54          SRP54-type protein, GTPase domain
  ------ inclusion threshold ------
      0.018   15.0   0.1      0.033   14.2   0.1    1.4  1  Flavi_DEAD     Flavivirus DEAD domain
      0.019   14.9   0.0      0.047   13.6   0.0    1.7  1  NACHT          NACHT domain
      0.029   14.0   0.0      0.054   13.1   0.0    1.4  1  AAA_25         AAA domain
      0.064   12.8   0.5       0.34   10.4   0.0    2.3  4  UvrD-helicase  UvrD/REP helicase N-terminal domain
      0.079   13.0   0.0       0.42   10.6   0.0    2.0  2  AAA_5          AAA domain (dynein-related subfamily)
      0.082   12.1   0.1        7.8    5.5   0.0    2.2  2  PIF1           PIF1-like helicase
       0.12   12.7   0.1       0.36   11.1   0.1    1.8  1  AAA_22         AAA domain
       0.17   12.3   0.5       0.49   10.8   0.1    2.1  1  AAA_16         AAA ATPase domain
       0.18   11.1   0.0       0.73    9.1   0.0    1.8  2  ATPase         KaiC


Domain annotation for each model (and alignments):
>> AAA_12  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.0       6.4   5.4e+03     157     187 ..     141     196 ..     137     197 .. 0.68
   2 !  204.2   0.0   1.8e-63   1.6e-60       2     198 ..     669     863 ..     668     864 .. 0.94

  Alignments for each domain:
  == domain 1  score: -3.2 bits;  conditional E-value: 6.4
      AAA_12 157 dviilslVRsnekk.........................eigflkderrlNValTR 187
                 ++i++ lVRs++++                         ++gf+  +  l V l R
  KOO20859.1 141 SCIVYHLVRSRNSEvmlhkesplgeitlecfitgtknvfQLGFVPVKEDLVVLLAR 196
                 789999***98666556666677777777777777777677777666666666655 PP

  == domain 2  score: 204.2 bits;  conditional E-value: 1.8e-63
      AAA_12   2 erSlferllkkekekvvlLdtqYRmhpeIsrfpsklfYkgkLkdaesvkkreleaqealeepleplvfidvekseeekekkeksyiNeeEaelvvklve 100
                  +Slferl+     +++ L++qYRmhp +s+fps++fY+g+L+++ + ++r+le +  +++p++p++f+   ++ee + +  +sy N++Ea+ v klv+
  KOO20859.1 669 GQSLFERLVMLS-VRPIRLQVQYRMHPCLSEFPSNTFYEGTLQNGVTSAERQLELDFPWPNPNRPMFFYTSVGQEEVSASG-TSYLNRAEATNVEKLVS 765
                 69**********.********************************************************999888888876.***************** PP

      AAA_12 101 kllkkgseeerkkigvitpYraqvellkkklkekeeekseke..ievntvdgfQGrekdviilslVRsnekkeigflkderrlNValTRAkskliivGn 197
                 ++l+ g++   ++igvitpY+ q  ++ + ++++ + +++    iev++vd+fQGrekd+iils+VRsne++ igfl+d rrlNValTRA+  ++++Gn
  KOO20859.1 766 RFLSGGVTP--DQIGVITPYEGQRAYIVSYMQRNGSLQQKLYsdIEVASVDAFQGREKDYIILSCVRSNERQGIGFLSDPRRLNVALTRARFGMVVLGN 862
                 *******99..********************9876555433355******************************************************9 PP

      AAA_12 198 k 198
                 +
  KOO20859.1 863 P 863
                 7 PP

>> UPF1_Zn_bind  RNA helicase (UPF2 interacting domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  179.3   0.2   5.4e-56   4.6e-53       2     152 .]     108     255 ..     107     255 .. 0.96
   2 ?   -1.7   0.0         3   2.6e+03      29      49 ..     483     504 ..     481     519 .. 0.68

  Alignments for each domain:
  == domain 1  score: 179.3 bits;  conditional E-value: 5.4e-56
  UPF1_Zn_bind   2 aCaYCgisdpesvvkCaackkwFCngkgkt.sashivthlvrskhkevslhkesplgdtvleCyncgsknvflLgfipaksesvvvllcrepcasak 97 
                   +C+YC+i++p++vvkC+a++kwFCn k +   as+iv+hlvrs+++ev+lhkesplg+++leC+++g+knvf+Lgf+p+ +e+ vvll+r++ ++++
    KOO20859.1 108 RCEYCNIHTPAAVVKCVATGKWFCNYKPAGlPASCIVYHLVRSRNSEVMLHKESPLGEITLECFITGTKNVFQLGFVPV-KEDLVVLLARDTEVNHT 203
                   6**************************9988***********************************************9.6778999****666555 PP

  UPF1_Zn_bind  98 slkdlnwdlsewqpliedrqllswlvkvpseeeqlrarkisakqiekleelwkkn 152
                      +++wdls+w pli+++++++wlvk ps++e lrar+++  qi+kleelw++n
    KOO20859.1 204 ---EYDWDLSKWAPLIQEKEFVQWLVKKPSDAEALRARNLNVGQIQKLEELWRTN 255
                   ...99************************************************97 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 3
  UPF1_Zn_bind  29 gkt.sashivthlvrskhkevs 49 
                   gkt +++ iv+hl ++++ +  
    KOO20859.1 483 GKTvTSASIVYHLAKQNQGQTL 504
                   5555778899999998776644 PP

>> AAA_11  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.3   0.2   1.7e-20   1.4e-17       2     118 ..     457     556 ..     456     567 .. 0.92
   2 !  105.1   0.5   6.2e-33   5.3e-30     161     259 ..     563     659 ..     555     661 .. 0.93

  Alignments for each domain:
  == domain 1  score: 64.3 bits;  conditional E-value: 1.7e-20
      AAA_11   2 lndsqreaiksalseseitliqGPPGtgKTktivellsqllsrrkseeeksakpriLvCapSNaAvDellerllrglldsegekykpkivRvgnee.er 99 
                 ln sq  a+k++l++   +++qGPPGtgKT t ++++ +l        +k+++ + LvCapSN+AvD+l+e++ +         +++++vR  +++ e 
  KOO20859.1 457 LNHSQVFAVKEVLQKAL-SIVQGPPGTGKTVTSASIVYHL--------AKQNQGQTLVCAPSNVAVDQLTEKIHK---------TGLRVVRFCAKSrEM 537
                 8*************996.**********************........589999******************999.........************999 PP

      AAA_11 100 iseavksvsleekvekrle 118
                 ++++v+ ++l ++v++  +
  KOO20859.1 538 VDSRVEYLTLHYQVRHLDT 556
                 9*************98765 PP

  == domain 2  score: 105.1 bits;  conditional E-value: 6.2e-33
      AAA_11 161 skleqerrklkkerkelskeleeaeesleeevldeaeivltTlsgagsklleklakkfdvviIDEAaqavEpstliPlrlgakkvvLvGDpkQLpatvi 259
                  kl+  +++l + +++ +k++++ ++++e+e+l+ a++v++T+s ag +++++l  +f+++++DEA+qa+Ep++liP+ lgak++vLvGD++QL ++v+
  KOO20859.1 563 HKLQLLKDELGELSQQDEKKFNSLKRAAEREILEAADVVCCTCSAAGDPRISSL--RFRQCLVDEATQATEPECLIPIVLGAKQLVLVGDHCQLGPVVM 659
                 5666778889999999999***********************************..9****************************************97 PP

>> DUF5599  Domain of unknown function (DUF5599)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   99.9   0.0   8.4e-32   7.2e-29       1      93 []     310     400 ..     310     400 .. 0.97

  Alignments for each domain:
  == domain 1  score: 99.9 bits;  conditional E-value: 8.4e-32
     DUF5599   1 qtqddisvrWdvglnkkrlasFvlpkldsgelrlvvGDelrlkykgse.aeeWegeghvvkltdssseevtleLrssskkaPtevttgFtvefV 93 
                 qtq++i+vrWd gln+kr+a+F++++ ++ e+r+ +GDel lk+ g+  + +W+g+g vv+l++s  ee+++eL+s   +aP ++++gFt++fV
  KOO20859.1 310 QTQENITVRWDKGLNEKRIAFFSFSQNKEDEMRVLTGDELLLKHPGDGtRPAWQGSGTVVRLSAS--EEIGIELKSG-GNAPIDINHGFTIDFV 400
                 9**********************************************96799***********65..9*******99.***************9 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.1   0.4   5.4e-15   4.6e-12       1     131 [.     456     657 ..     456     666 .. 0.86

  Alignments for each domain:
  == domain 1  score: 46.1 bits;  conditional E-value: 5.4e-15
      AAA_30   1 elnaeQaaavealltsgdrvavltGpAGtGKttalkalreaweaa.ggrviglAptgkaAkvLaeelgieastiakllkrlk................. 81 
                 eln++Q  av+++l++   +++++Gp+GtGKt + ++++ +++++ +g+ +++Ap++ a ++L+e++  ++ ++ ++  + +                 
  KOO20859.1 456 ELNHSQVFAVKEVLQKA--LSIVQGPPGTGKTVTSASIVYHLAKQnQGQTLVCAPSNVAVDQLTEKIHKTGLRVVRFCAKSRemvdsrveyltlhyqvr 552
                 599***********999..9******************888888768*****************99998888888888888888899999999999999 PP

      AAA_30  82 ...........................................................grarlepg.tllivDEagmvdtkqlaallkaaekagakvi 120
                                                                            +  +   + +  +vDEa  +   +   l+ ++     +++
  KOO20859.1 553 hldtperaelhklqllkdelgelsqqdekkfnslkraaereileaadvvcctcsaagdpR-ISSL-RfRQCLVDEATQATEPEC--LIPIVLG-AKQLV 646
                 999**999999999999999999999999999999******************9998642.2222.3477889**999877655..5666655.56899 PP

      AAA_30 121 lvGDerQlasV 131
                 lvGD+ Ql++V
  KOO20859.1 647 LVGDHCQLGPV 657
                 ********999 PP

>> AAA_19  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.1   0.1     1e-12   8.7e-10       4     142 ..     464     655 ..     461     658 .. 0.75

  Alignments for each domain:
  == domain 1  score: 39.1 bits;  conditional E-value: 1e-12
      AAA_19   4 ave.alkekvllvtaGpGtGKTrvlkhivallvelggvkpeeillvaftgrAakelrerlaalgae.................atTiHrlal....... 77 
                 av+  l++ + +v ++pGtGKT +   iv +l ++++    + l++a+ + A+++l+e++++ g++                   T+H+  +       
  KOO20859.1 464 AVKeVLQKALSIVQGPPGTGKTVTSASIVYHLAKQNQ---GQTLVCAPSNVAVDQLTEKIHKTGLRvvrfcaksremvdsrveYLTLHYQ-Vrhldtpe 558
                 7876899999************************996...59******************998888888888888888888886777755.24788888 PP

      AAA_19  78 ...........................ldfddlltealelle.....................eaeeekklqeee.llivDEfqdvdelqyrLlkallg 127
                                            l             +                        + + l  ++   +vDE+ + +e +  L+  +lg
  KOO20859.1 559 raelhklqllkdelgelsqqdekkfnsL-------------KraaereileaadvvcctcsaaGDPRISSL--RFrQCLVDEATQATEPE-CLIPIVLG 641
                 8888888889999988666666544440.............234444444466666677754322233444..345899***99988544.58888885 PP

      AAA_19 128 ekkklllvGDpdQli 142
                  k +l+lvGD+ Ql 
  KOO20859.1 642 AK-QLVLVGDHCQLG 655
                 55.5*******9986 PP

>> DUF2075  Uncharacterized conserved protein (DUF2075)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.9   0.0     1e-07   8.9e-05       1     125 [.     471     600 ..     471     605 .. 0.59
   2 ?   -2.1   0.0         2   1.7e+03      32      54 ..     789     811 ..     782     826 .. 0.70
   3 ?    0.6   0.1      0.32   2.7e+02     345     359 ..     845     859 ..     843     862 .. 0.91

  Alignments for each domain:
  == domain 1  score: 21.9 bits;  conditional E-value: 1e-07
     DUF2075   1 kavvlVtGvaGtGKtvvllnllaeleddeeertavylsvNhplvlvlrealakke..ekkkkkeafeklssfinnlsef....kkaeekkeepkedvvi 93 
                 ka+ +V+G +GtGKtv   ++++ l  ++++ ++ +   ++  v+ l e++ k+     +   ++ e ++s ++ l+      +  + +++e +   ++
  KOO20859.1 471 KALSIVQGPPGTGKTVTSASIVYHL-AKQNQGQTLVCAPSNVAVDQLTEKIHKTGlrVVRFCAKSREMVDSRVEYLTLHyqvrHLDTPERAELHKLQLL 568
                 57889********************.6666666666777778899999999988864222222333333333333322233323333333333444455 PP

     DUF2075  94 vDEAhrlltksdqaekqseenqlkelmkrakv 125
                  DE   l ++ +++++  +++  +e++++a+v
  KOO20859.1 569 KDELGELSQQDEKKFNSLKRAAEREILEAADV 600
                 66666666666666665566666666666665 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 2
     DUF2075  32 rtavylsvNhplvlvlrealakk 54 
                 + + y+ +N++l+++l+++++  
  KOO20859.1 789 YIVSYMQRNGSLQQKLYSDIEVA 811
                 55678888888888888887644 PP

  == domain 3  score: 0.6 bits;  conditional E-value: 0.32
     DUF2075 345 ayrVLLtRGrkGlyi 359
                 +++V LtR+r G+++
  KOO20859.1 845 RLNVALTRARFGMVV 859
                 79***********98 PP

>> ResIII  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.4   0.0   5.7e-08   4.9e-05       4      78 ..     457     524 ..     455     600 .. 0.82

  Alignments for each domain:
  == domain 1  score: 23.4 bits;  conditional E-value: 5.7e-08
                 E-HHHHHHHHHHT......TTSEEEEEESTTSTHHHHHHHHHHHH-S.....-EEEEESSHHHHHHHHHHGGGGT CS
      ResIII   4 lreyQeeaienlleklkskrdkrglikmaTGtGKTlvaaklierllkkgkeekflflvprkslleqtleefkkfl 78 
                 l++ Q  a++++l+      +   +++ + GtGKT+++a+++++l+k+++  ++l+ +p++  ++q+ e++ k+ 
  KOO20859.1 457 LNHSQVFAVKEVLQ------KALSIVQGPPGTGKTVTSASIVYHLAKQNQ-GQTLVCAPSNVAVDQLTEKIHKTG 524
                 56667777777774......445899********************9855.6***************99986654 PP

>> Helicase_RecD  Helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.5   0.0   1.7e-06    0.0014       2      54 ..     476     529 ..     475     571 .. 0.74

  Alignments for each domain:
  == domain 1  score: 18.5 bits;  conditional E-value: 1.7e-06
  Helicase_RecD   2 ltAdRGRGKSaalGlalaaliaegksnilvtapskenvktlfeflak.glealg 54 
                    +++ +G+GK+ + + ++ +l+++++ + lv+aps+ +v++l+e ++k gl+ ++
     KOO20859.1 476 VQGPPGTGKTVTSASIVYHLAKQNQGQTLVCAPSNVAVDQLTEKIHKtGLRVVR 529
                    78899**************************************99761344433 PP

>> PhoH  PhoH-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.1   7.7e-06    0.0065       5      61 ..     457     513 ..     454     525 .. 0.89

  Alignments for each domain:
  == domain 1  score: 15.9 bits;  conditional E-value: 7.7e-06
                 -SHHHHHHHHHHHH-SEEEEE--TTSSTTHHHHHHHHHHHHTTS-SEEEEEE-S--T CS
        PhoH   5 ktkeQkeylealkkndivfaiGpaGtGKtylavalavealkkkkvkriiltrpavea 61 
                  +++Q  +++ + ++ + ++ Gp GtGKt  + ++  ++ k+++ + ++ +  +v +
  KOO20859.1 457 LNHSQVFAVKEVLQKALSIVQGPPGTGKTVTSASIVYHLAKQNQGQTLVCAPSNVAV 513
                 5789999*************************************9999988777765 PP

>> DEAD  DEAD/DEAH box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.0   9.8e-06    0.0083       4      73 ..     461     526 ..     458     610 .. 0.76

  Alignments for each domain:
  == domain 1  score: 15.9 bits;  conditional E-value: 9.8e-06
                 HHHHHHHHHTTCEEEEEESTTSSHHHHHHHHHHHHHHHSTTSTS-EEEEEESSHHHHHHHHHHHHHHTTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD   4 QaeaiplilgggdvlvaaeTGsGKTlaflipvlqivyetkgktgpkalivePtreLaeqtlnnlkkfkky 73 
                 Q  a++++l++   +v+++ G+GKT   +  ++ +++   ++++ ++l+ +P+   + q  +++ k +  
  KOO20859.1 461 QVFAVKEVLQKALSIVQGPPGTGKTVT-SASIVYHLA---KQNQGQTLVCAPSNVAVDQLTEKIHKTGLR 526
                 556788899999999**********98.555555664...68888***************9999887653 PP

>> SRP54  SRP54-type protein, GTPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.0   1.2e-05      0.01       5      75 ..     475     541 ..     471     588 .. 0.78

  Alignments for each domain:
  == domain 1  score: 15.5 bits;  conditional E-value: 1.2e-05
                 EEEESTTSSHHHHHHHHHHHHHHTTS-EEEEEESTSSTTHHHHHHHHHHHTTEEEEESSTTSCHHHHHHHH CS
       SRP54   5 llvGlqGaGKTttlaKLaallkkegkkvllvaaDtfRaaAveQLktlaeklgvpvikkkeeadpaavakea 75 
                 ++ G+ G+GKT t a +  +l k+++   lv+a      Av+QL +  +k+g +v++   ++   +++   
  KOO20859.1 475 IVQGPPGTGKTVTSASIVYHLAKQNQGQTLVCAPS--NVAVDQLTEKIHKTGLRVVRFCAKS--REMVDSR 541
                 6789**********************999999987..689************9999744333..4444444 PP

>> Flavi_DEAD  Flavivirus DEAD domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   0.1   3.8e-05     0.033       4      69 ..     471     536 ..     468     564 .. 0.85

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 3.8e-05
                 --EEEEE--TTS-TTTTHHHHHHHHHHHTT--EEEEESSHHHHHHHHHHTTTS-EEE--------- CS
  Flavi_DEAD   4 kkltvldlhPGaGktrkvlpelvkeaierrlrtlvLaPtrvvlaemeealkglevryktsavkeek 69 
                 k l +++  PG+Gkt      + + a +++ +tlv aP  v +  ++e ++++ +r  +  +k+++
  KOO20859.1 471 KALSIVQGPPGTGKTVTSASIVYHLAKQNQGQTLVCAPSNVAVDQLTEKIHKTGLRVVRFCAKSRE 536
                 678899999*******999999999999999*********************99998776664444 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.0   5.5e-05     0.047       2      35 ..     473     506 ..     472     597 .. 0.80

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 5.5e-05
                 CEEEEC-TTTCHHHHHHHHHHHHCTS-SCCCC-S CS
       NACHT   2 lvilqGeaGsGKTtLlqklalawaegklpqgafk 35 
                 l+i+qG++G GKT+  ++++  +a++++ q  ++
  KOO20859.1 473 LSIVQGPPGTGKTVTSASIVYHLAKQNQGQTLVC 506
                 589***********************98885443 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.0   6.3e-05     0.054      26      63 ..     465     504 ..     454     596 .. 0.72

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 6.3e-05
      AAA_25  26 vkgllpagelallaGapgtGKttlaldlalava...tGkpw 63 
                 vk++l  ++l+++ G+pgtGKt+   ++++++a   +G+ +
  KOO20859.1 465 VKEVL-QKALSIVQGPPGTGKTVTSASIVYHLAkqnQGQTL 504
                 77887.69*************************65544433 PP

>> UvrD-helicase  UvrD/REP helicase N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.8   0.1       8.4   7.2e+03     128     158 ..     285     315 ..     234     342 .. 0.66
   2 ?   10.4   0.0   0.00039      0.34       3      83 ..     459     548 ..     457     600 .. 0.66
   3 ?   -0.9   0.0       1.1   9.4e+02     256     294 ..     617     653 ..     584     654 .. 0.74
   4 ?   -3.7   0.0       7.5   6.4e+03     238     266 ..     789     817 ..     751     821 .. 0.74

  Alignments for each domain:
  == domain 1  score: -3.8 bits;  conditional E-value: 8.4
                    HCCHHHHHHHHHSCHSHTTTTHHHHHHHHHH CS
  UvrD-helicase 128 dlkqqellkelleksaddslnldkkklekli 158
                      ++q+++  l++ +ad ++++++++++++i
     KOO20859.1 285 AYQYQNIMGPLVKLEADYDKHMKEQQTQENI 315
                    4455555555555555555555555555443 PP

  == domain 2  score: 10.4 bits;  conditional E-value: 0.00039
                    HHHHHHHHS.-SSEE.EEEE-TTSSHHHHHHHHHHHHHHTSSSTGGGEEEEESSHHHHHHHHHHHHH......................HHHHCCH CS
  UvrD-helicase   3 peqreaias.lggpi.lveAsAGsGKTfvlaerilrlikeeeiepdrilvvTFTnkAaeElkeRiee......................alkkaeq 74 
                     +q  a++  l++ + +v   +G+GKT + a+ +  +++++  ++ + lv    n A + l e+i++                      +      
     KOO20859.1 459 HSQVFAVKEvLQKALsIVQGPPGTGKTVTSASIVY-HLAKQ--NQGQTLVCAPSNVAVDQLTEKIHKtglrvvrfcaksremvdsrveyL------ 545
                    5566666664444441466778*****98776555.55555..59999******************988888865444443333333330...... PP

                    HCTT-HHHH CS
  UvrD-helicase  75 essdderlr 83 
                           l 
     KOO20859.1 546 ------TLH 548
                    ......333 PP

  == domain 3  score: -0.9 bits;  conditional E-value: 1.1
                    HSSEEEESSGGG-BHHHHHHHHHHHTTTTTEEEEE-GGG CS
  UvrD-helicase 256 rykeiliDEyQDTnkiQyrilkllasgheelfmvGDpkQ 294
                    r++  l+DE+  T+ +  + l  ++ g ++l++vGD  Q
     KOO20859.1 617 RFRQCLVDEA--TQATEPECLIPIVLGAKQLVLVGDHCQ 653
                    799999***8..556666666666666678******877 PP

  == domain 4  score: -3.7 bits;  conditional E-value: 7.5
                    HHHHHHHHCHHHHHHHHHHSSEEEESSGG CS
  UvrD-helicase 238 allelleeneelaealrerykeiliDEyQ 266
                    ++++++++n +l+++l + ++++ +D +Q
     KOO20859.1 789 YIVSYMQRNGSLQQKLYSDIEVASVDAFQ 817
                    55668889999999999999999999999 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.0       1.8   1.5e+03      64      83 ..     235     261 ..     188     266 .. 0.60
   2 ?   10.6   0.0   0.00049      0.42       3      46 ..     475     521 ..     474     544 .. 0.85

  Alignments for each domain:
  == domain 1  score: -0.9 bits;  conditional E-value: 1.8
                 -......G-SEEEEESGGG--.HHHHH CS
       AAA_5  64 r......egeilvlDEverae.sevln 83 
                         g+i  l+E++r + s++++
  KOO20859.1 235 LrarnlnVGQIQKLEELWRTNpSATID 261
                 034456689999999999999555655 PP

  == domain 2  score: 10.6 bits;  conditional E-value: 0.00049
                 EEE--SSSSHHHHHHHGGGGB...S--EEEEE--TT--HHHHH--B- CS
       AAA_5   3 lLvGppGtgKselaerlaaal...nreveyvqltrdtteedlkgrre 46 
                 +++GppGtgK+  + ++   l   n+  + v  +++   ++l+ +++
  KOO20859.1 475 IVQGPPGTGKTVTSASIVYHLakqNQGQTLVCAPSNVAVDQLTEKIH 521
                 789*****************999999999999999999999998887 PP

>> PIF1  PIF1-like helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.3   0.0     0.022        19      23      66 ..     472     516 ..     456     525 .. 0.76
   2 ?    5.5   0.0    0.0092       7.8     135     159 ..     636     660 ..     618     694 .. 0.77

  Alignments for each domain:
  == domain 1  score: 4.3 bits;  conditional E-value: 0.022
                 S-EEEEESTTSSCHHHHHHHHHHCHC.TCCCEEEEESSHHHHHCC CS
        PIF1  23 klfFvtGsgGtgKtflwkallkklrs.egkivlavAssGvAalll 66 
                  l  v+G  GtgKt     ++  l + ++ ++l+ A s vA  +l
  KOO20859.1 472 ALSIVQGPPGTGKTVTSASIVYHLAKqNQGQTLVCAPSNVAVDQL 516
                 445699*************99998772556899999999997666 PP

  == domain 2  score: 5.5 bits;  conditional E-value: 0.0092
                 .-SCCCC-EEEEE--TTS-----SS CS
        PIF1 135 idkpFGGktvvlgGDfrQilPviek 159
                 i    G k++vl GD  Q+ Pv+  
  KOO20859.1 636 IPIVLGAKQLVLVGDHCQLGPVVMC 660
                 556789****************953 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.1   0.00042      0.36       6      56 ..     472     516 ..     468     581 .. 0.72

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00042
      AAA_22   6 gilvvtGesGtGKTtllrrlleqldeeakaeeerpevvfvtlpsstsskdl 56 
                  + +v G++GtGKT++ + +++ l ++      + ++ +v++ps    ++l
  KOO20859.1 472 ALSIVQGPPGTGKTVTSASIVYHLAKQ------NQGQTLVCAPSNVAVDQL 516
                 567899***************999665......444445555444444333 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.1   0.00057      0.49      27      80 ..     474     524 ..     463     654 .. 0.74

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00057
      AAA_16  27 vllsGesGvGKsslvrellralekdggiflrgkcdql.esaipysalaqalaree 80 
                  ++ G++G+GK+    ++  +l k+     +g++  + +s+++ ++l++ + + +
  KOO20859.1 474 SIVQGPPGTGKTVTSASIVYHLAKQ----NQGQTLVCaPSNVAVDQLTEKIHKTG 524
                 4799*************9999*999....78888888555555555555554433 PP

>> ATPase  KaiC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.1   0.0   0.00086      0.73      18      74 ..     470     527 ..     450     556 .. 0.78
   2 ?   -1.2   0.0       1.3   1.1e+03      37      94 ..     765     821 ..     763     832 .. 0.89

  Alignments for each domain:
  == domain 1  score: 9.1 bits;  conditional E-value: 0.00086
      ATPase  18 egrvvlitGepGtGKtifalqFlikgaekygepgvfvtveepa.edlrenakslGwdl 74 
                 +++   + G pGtGKt+ ++  +++ a++ + +++  +    a  +l e++++ G  +
  KOO20859.1 470 QKALSIVQGPPGTGKTVTSASIVYHLAKQNQGQTLVCAPSNVAvDQLTEKIHKTGLRV 527
                 55667899****************9999966666555544444467777777777655 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 1.3
      ATPase  37 lqFlikgaekygepgvfvtveepaedlrenakslGwdlekleeegklaiidasesaee 94 
                  +Fl  g+   ++ gv+   e +   +   +++ G   +kl +  ++a +da++ +e+
  KOO20859.1 765 SRFLSGGVTP-DQIGVITPYEGQRAYIVSYMQRNGSLQQKLYSDIEVASVDAFQGREK 821
                 6788888777.99999999999999****************************99876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1069 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       770  (0.0429472); expected 358.6 (0.02)
Passed bias filter:                      635  (0.0354175); expected 358.6 (0.02)
Passed Vit filter:                        79  (0.00440627); expected 17.9 (0.001)
Passed Fwd filter:                        21  (0.00117129); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              21  [number of targets reported over threshold]
# CPU time: 0.86u 0.30s 00:00:01.15 Elapsed: 00:00:00.46
# Mc/sec: 6951.72
//
Query:       KOO20860.1  [L=302]
Description: translocation protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.4e-17   63.1   0.4    3.5e-17   62.5   0.4    1.2  1  Sec66     Preprotein translocase subunit Sec66
  ------ inclusion threshold ------
      0.012   16.1   0.2      0.028   14.9   0.2    1.8  1  GLTSCR1   Conserved region of unknown function on GLTSCR prot


Domain annotation for each model (and alignments):
>> Sec66  Preprotein translocase subunit Sec66
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.5   0.4   3.9e-21   3.5e-17      36     168 ..      37     180 ..       5     187 .. 0.77

  Alignments for each domain:
  == domain 1  score: 62.5 bits;  conditional E-value: 3.9e-21
       Sec66  36 lepwFpenlqrdiYlsllhl..........ekkkeekvpekvlkAALLrravedirrilklreskpalevllqkGsvgddlwqrfqraekeleeElkdv 124
                  +++F++ + ++  ++l              +  ee +++  l   LL+ra  di ri +l +++p+++ l+q+G +   +w+++++ae+ +++E++ v
  KOO20860.1  37 DSDLFQAIDDKNYDFELPIEvdeydekkreLDMGEEPADKRTLPLKLLERAKADIPRIEQLEKDHPRMARLFQRGLLPYHVWEQLLEAEQVMDAEVNTV 135
                 4555665555555555544445555554432223456677788888***************************************************** PP

       Sec66 125 vqeaealkpgWgqtifqsaneilanealrr.rleeiekrkeeeke 168
                  +eae l++gWgq +f  a  +l  ++  + r+e+++k+++ +  
  KOO20860.1 136 QAEAELLQKGWGQGVFSQAYQMLRKDREDElRMEQMQKEAAVLTL 180
                 **********************98766544388999888877665 PP

>> GLTSCR1  Conserved region of unknown function on GLTSCR protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.9   0.2   3.1e-06     0.028      24      72 ..     112     161 ..     107     225 .. 0.67

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 3.1e-06
     GLTSCR1  24 LlPYHvfqepkedeedlekadeefekvaeel........lkrfqklenkfrklllke 72 
                 LlPYHv+++  e e+ ++ + ++++++ae l        +        + +++l+k+
  KOO20860.1 112 LLPYHVWEQLLEAEQVMDAEVNTVQAEAELLqkgwgqgvF-------SQAYQMLRKD 161
                 9**************9996655555555555323332222.......2222222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (302 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       672  (0.0374812); expected 358.6 (0.02)
Passed bias filter:                      443  (0.0247086); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.44u 0.26s 00:00:00.70 Elapsed: 00:00:00.41
# Mc/sec: 2209.30
//
Query:       KOO20861.1  [L=111]
Description: coiled-coil-helix-coiled-coil-helix domain-containing protein 5 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.6e-19   68.9  11.9    9.5e-12   44.7   2.1    2.2  2  CX9C           CHCH-CHCH-like Cx9C, IMS import disulfide rela
    2.1e-05   24.4  12.7     0.0033   17.4   1.7    2.2  2  Cmc1           Cytochrome c oxidase biogenesis protein Cmc1 l
     0.0012   18.9   5.4      0.012   15.7   0.1    3.0  3  CHCH           CHCH domain
  ------ inclusion threshold ------
      0.019   15.2   9.4       0.78   10.0   3.4    3.0  2  UPF0203        Uncharacterised protein family (UPF0203)
      0.099   13.1   0.4      0.099   13.1   0.4    2.4  3  Prot_inhib_II  Potato type II proteinase inhibitor family
       0.12   12.6  14.3       0.12   12.6   0.9    2.1  2  COX6B          Cytochrome oxidase c subunit VIb
        1.5    8.6  16.3       0.25   11.1   2.2    3.1  3  NDUF_B7        NADH-ubiquinone oxidoreductase B18 subunit (ND
        7.1    7.1  19.5       0.12   12.7   2.7    3.4  4  COX17          Cytochrome C oxidase copper chaperone (COX17)
        8.5    6.9  10.7         12    6.4   1.3    2.6  3  GCK            GCK domain


Domain annotation for each model (and alignments):
>> CX9C  CHCH-CHCH-like Cx9C, IMS import disulfide relay-system,
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.7   2.1   4.8e-15   9.5e-12       1      42 [.       5      47 ..       5      48 .. 0.96
   2 !   29.6   2.5   2.6e-10   5.3e-07       2      42 ..      53      93 ..      52      94 .. 0.96

  Alignments for each domain:
  == domain 1  score: 44.7 bits;  conditional E-value: 4.8e-15
        CX9C  1 lEdvakyCpkefeaYhkCvssn.qswpekCkeqkkeLakCiks 42
                l++va++C ke+ aY  Cv+++ + w++ C+++k +L  C+++
  KOO20861.1  5 LDQVAQHCLKELDAYSTCVEKHpHRWQSVCATLKADLKDCAAA 47
                799*************************************976 PP

  == domain 2  score: 29.6 bits;  conditional E-value: 2.6e-10
        CX9C  2 EdvakyCpkefeaYhkCvssnqswpekCkeqkkeLakCiks 42
                +dv + C  e e+Y +C+ +n + p+ C++q   L +C+++
  KOO20861.1 53 NDVKARCAAEIEQYDRCLKANVNHPDTCMPQLHRLWQCSEE 93
                79************************************997 PP

>> Cmc1  Cytochrome c oxidase biogenesis protein Cmc1 like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.4   1.7   1.6e-06    0.0033       8      48 ..       7      47 ..       4      53 .. 0.92
   2 !   12.6   3.5   5.2e-05       0.1       8      51 ..      54      96 ..      48     100 .. 0.89

  Alignments for each domain:
  == domain 1  score: 17.4 bits;  conditional E-value: 1.6e-06
        Cmc1  8 karkeCaelikalaeChkdrllkvvgkCneekeamkkClke 48
                +  ++C ++ +a+ +C  +++++    C ++k ++k+C ++
  KOO20861.1  7 QVAQHCLKELDAYSTCVEKHPHRWQSVCATLKADLKDCAAA 47
                56689*********************************876 PP

  == domain 2  score: 12.6 bits;  conditional E-value: 5.2e-05
        Cmc1  8 karkeCaelikalaeChkdrllkvvgkCneekeamkkClkeyrt 51
                  +++Ca++i+++++C k   ++   +C  + + + +C  e+++
  KOO20861.1 54 DVKARCAAEIEQYDRCLK-ANVNHPDTCMPQLHRLWQCSEEKEK 96
                56799*************.8999***************999876 PP

>> CHCH  CHCH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.1     6e-06     0.012       1      33 [.      12      45 ..      12      47 .. 0.93
   2 ?    4.5   1.3      0.02        40       5      32 ..      38      69 ..      34      72 .. 0.71
   3 ?    2.8   1.8     0.066   1.3e+02       1      15 [.      59      73 ..      59      96 .. 0.70

  Alignments for each domain:
  == domain 1  score: 15.7 bits;  conditional E-value: 6e-06
                THHHHHHHHHHHHHCTSS.TTTTHHHHHHHHHHH CS
        CHCH  1 CgeefkeylkClkdnsde.fskCrkefeafkeCv 33
                C++e ++y +C +++ ++ +s C  +   +k+C+
  KOO20861.1 12 CLKELDAYSTCVEKHPHRwQSVCATLKADLKDCA 45
                ***********************99999999997 PP

  == domain 2  score: 4.5 bits;  conditional E-value: 0.02
                HHHHHHHHHHCTSS....TTTTHHHHHHHHHH CS
        CHCH  5 fkeylkClkdnsde....fskCrkefeafkeC 32
                   + +C   ns         C  e+e+++ C
  KOO20861.1 38 KADLKDCAAANSGMvndvKARCAAEIEQYDRC 69
                55555788888884445788999999999999 PP

  == domain 3  score: 2.8 bits;  conditional E-value: 0.066
                THHHHHHHHHHHHHC CS
        CHCH  1 CgeefkeylkClkdn 15
                C+ e  +y +Clk n
  KOO20861.1 59 CAAEIEQYDRCLKAN 73
                777888888888877 PP

>> UPF0203  Uncharacterised protein family (UPF0203)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.7   0.3    0.0022       4.3      33      50 ..       9      26 ..       3      31 .. 0.86
   2 ?   10.0   3.4   0.00039      0.78      31      53 ..      54      76 ..      28      97 .. 0.81

  Alignments for each domain:
  == domain 1  score: 7.7 bits;  conditional E-value: 0.0022
     UPF0203 33 eeeCeklwkkYreClkka 50
                 ++C k+ ++Y++C++k+
  KOO20861.1  9 AQHCLKELDAYSTCVEKH 26
                689************997 PP

  == domain 2  score: 10.0 bits;  conditional E-value: 0.00039
     UPF0203 31 ekeeeCeklwkkYreClkkalke 53
                  +++C+++ ++Y +Clk+++++
  KOO20861.1 54 DVKARCAAEIEQYDRCLKANVNH 76
                34899**************9987 PP

>> Prot_inhib_II  Potato type II proteinase inhibitor family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.4     5e-05     0.099       4      39 ..       9      45 ..       7      49 .. 0.87
   2 ?   -2.0   0.2       2.5     5e+03       7      18 ..      59      71 ..      56      81 .. 0.55
   3 ?   -2.3   3.6       3.2   6.3e+03       6      29 ..      79     102 ..      75     110 .. 0.51

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 5e-05
  Prot_inhib_II  4 pkeCdpri.aymiCpssgskklkqiCtnCcagkkgCk 39
                   +++C +++ ay++C ++++++ +++C + +a  k+C 
     KOO20861.1  9 AQHCLKELdAYSTCVEKHPHRWQSVCATLKADLKDCA 45
                   6789888846****************99888889995 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 2.5
  Prot_inhib_II  7 Cdpri.aymiCps 18
                   C  +i +y  C +
     KOO20861.1 59 CAAEIeQYDRCLK 71
                   5555523666654 PP

  == domain 3  score: -2.3 bits;  conditional E-value: 3.2
  Prot_inhib_II   6 eCdpria.ymiCpssgskklkqiCt 29 
                     C p+++    C+++++k+   +C 
     KOO20861.1  79 TCMPQLHrLWQCSEEKEKA-ACSCE 102
                    5666664134566554443.44444 PP

>> COX6B  Cytochrome oxidase c subunit VIb
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.9   6.3e-05      0.12       9      49 ..       9      51 ..       4      56 .. 0.77
   2 ?    4.8   6.8     0.016        33      10      53 ..      57     101 ..      53     105 .. 0.71

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 6.3e-05
       COX6B  9 rkaCwearddyfkCldkkgeekae..kkeeqdekkCkaekkey 49
                +++C ++ d+y  C++k+    ++  +  + d k+C a ++++
  KOO20861.1  9 AQHCLKELDAYSTCVEKHPHRWQSvcATLKADLKDCAAANSGM 51
                69***************98855446666677777777777666 PP

  == domain 2  score: 4.8 bits;  conditional E-value: 0.016
       COX6B  10 kaCwearddyfkCldkkgeekaekkeeqdekk..CkaekkeyesnC 53 
                  +C ++ ++y +Cl+++   +++++  q ++   C++ek++   +C
  KOO20861.1  57 ARCAAEIEQYDRCLKANVN-HPDTCMPQLHRLwqCSEEKEKAACSC 101
                 57**************977.66655444443233777777766666 PP

>> NDUF_B7  NADH-ubiquinone oxidoreductase B18 subunit (NDUFB7)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.1   0.3      0.16   3.3e+02      40      52 ..      11      23 ..       7      29 .. 0.79
   2 ?   11.1   2.2   0.00012      0.25      13      52 ..      27      70 ..      23      74 .. 0.82
   3 ?    9.9   3.5    0.0003      0.59      19      54 ..      58      93 ..      53      97 .. 0.91

  Alignments for each domain:
  == domain 1  score: 1.1 bits;  conditional E-value: 0.16
     NDUF_B7 40 kCehekhayekCq 52
                +C +e +ay+ C 
  KOO20861.1 11 HCLKELDAYSTCV 23
                7999999999995 PP

  == domain 2  score: 11.1 bits;  conditional E-value: 0.00012
     NDUF_B7 13 plkeRDyCAhlLiplnkCrrenfplp....wkCehekhayekCq 52
                p ++   CA l  +l++C   n+ ++     +C+ e ++y+ C 
  KOO20861.1 27 PHRWQSVCATLKADLKDCAAANSGMVndvkARCAAEIEQYDRCL 70
                7788999*************998755222278***********5 PP

  == domain 3  score: 9.9 bits;  conditional E-value: 0.0003
     NDUF_B7 19 yCAhlLiplnkCrrenfplpwkCehekhayekCqye 54
                +CA+   ++ +C + n+  p +C  + h   +C  e
  KOO20861.1 58 RCAAEIEQYDRCLKANVNHPDTCMPQLHRLWQCSEE 93
                7****************************9999765 PP

>> COX17  Cytochrome C oxidase copper chaperone (COX17)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.9   0.3    0.0081        16      27      44 ..       9      26 ..       3      29 .. 0.82
   2 ?   12.7   2.7   6.1e-05      0.12       8      43 ..      33      72 ..      26      75 .. 0.81
   3 ?   -3.0   3.2       5.1     1e+04      12      12 ..      93      93 ..      75     101 .. 0.55
   4 ?   -1.0   1.0       1.2   2.4e+03       2      10 ..      94     102 ..      93     106 .. 0.79

  Alignments for each domain:
  == domain 1  score: 5.9 bits;  conditional E-value: 0.0081
       COX17 27 eekCkelieahkaCmrsl 44
                +++C + ++a+ +C +++
  KOO20861.1  9 AQHCLKELDAYSTCVEKH 26
                349***********9875 PP

  == domain 2  score: 12.7 bits;  conditional E-value: 6.1e-05
       COX17  8 aCpetKkaRDeCiles.gaeee...kCkelieahkaCmrs 43
                +C + K+   +C   + g  ++   +C+  ie++ +C++ 
  KOO20861.1 33 VCATLKADLKDCAAANsGMVNDvkaRCAAEIEQYDRCLKA 72
                8999999999999888533333567*************85 PP

  == domain 3  score: -3.0 bits;  conditional E-value: 5.1
       COX17 12 t 12
                +
  KOO20861.1 93 E 93
                2 PP

  == domain 4  score: -1.0 bits;  conditional E-value: 1.2
       COX17   2 klKpCCaCp 10 
                 k K+ C+C 
  KOO20861.1  94 KEKAACSCE 102
                 678999996 PP

>> GCK  GCK domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.4   1.3    0.0062        12      35      66 ..       8      39 ..       3      47 .. 0.83
   2 ?    4.5   4.3     0.024        49      20      56 ..      40      76 ..      33      97 .. 0.76
   3 ?   -1.1   0.2       1.4   2.7e+03      16      30 ..      82      96 ..      78     106 .. 0.62

  Alignments for each domain:
  == domain 1  score: 6.4 bits;  conditional E-value: 0.0062
         GCK 35 lvekcaevtatlkkCmeahsdYYePiLaaeka 66
                + ++c+   ++ ++C+e+h+  ++ + a  ka
  KOO20861.1  8 VAQHCLKELDAYSTCVEKHPHRWQSVCATLKA 39
                67889999999*********999999887776 PP

  == domain 2  score: 4.5 bits;  conditional E-value: 0.024
         GCK 20 awekcveeaeknkedlvekcaevtatlkkCmeahsdY 56
                ++++c        +d+  +ca   ++  +C++a+ ++
  KOO20861.1 40 DLKDCAAANSGMVNDVKARCAAEIEQYDRCLKANVNH 76
                67888555555888******************98776 PP

  == domain 3  score: -1.1 bits;  conditional E-value: 1.4
         GCK 16 esfiawekcveeaek 30
                 ++  + +c ee ek
  KOO20861.1 82 PQLHRLWQCSEEKEK 96
                455556677777766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (111 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       707  (0.0394333); expected 358.6 (0.02)
Passed bias filter:                      341  (0.0190195); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.41u 0.28s 00:00:00.69 Elapsed: 00:00:00.42
# Mc/sec: 795.58
//
Query:       KOO20862.1  [L=181]
Description: hypothetical protein Ctob_000116 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (181 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       198  (0.0110436); expected 358.6 (0.02)
Passed bias filter:                      156  (0.00870099); expected 358.6 (0.02)
Passed Vit filter:                        10  (0.000557756); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.24s 00:00:00.61 Elapsed: 00:00:00.39
# Mc/sec: 1398.89
//
Query:       KOO20863.1  [L=209]
Description: btb poz domain-containing adapter for cul3-mediated degradation protein 3-like protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    8.8e-10   38.8   0.0    1.4e-09   38.2   0.0    1.3  1  BTB_2     BTB/POZ domain


Domain annotation for each model (and alignments):
>> BTB_2  BTB/POZ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.2   0.0   7.6e-14   1.4e-09      39      91 ..      13      65 ..       2      68 .. 0.79

  Alignments for each domain:
  == domain 1  score: 38.2 bits;  conditional E-value: 7.6e-14
                TTTTEEEE-S-HHHHHHHHHHHHS.S-B---T.TS-HHHHHHHHHHHT--TT-B CS
       BTB_2 39 eetneyffDRspklFetiLnyyrtggkLhrpe.evelkslleElefygleelll 91
                ++++++f+DR+ ++F++iLn++r+ g+L  pe + e + l  El++y le ++ 
  KOO20863.1 13 DDEGCVFIDRDGTHFRAILNFLRS-GTLALPEdKTEERLLWIELRYYMLEAHVS 65
                7889********************.55555550555666778*******98755 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (209 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       397  (0.0221429); expected 358.6 (0.02)
Passed bias filter:                      381  (0.0212505); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.24s 00:00:00.61 Elapsed: 00:00:00.36
# Mc/sec: 1745.80
//
Query:       KOO20864.1  [L=1954]
Description: hypothetical protein Ctob_000132 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    3.4e-05   24.4   0.0    0.00013   22.6   0.0    2.0  2  Laminin_G_2  Laminin G domain
  ------ inclusion threshold ------
      0.012   15.8   0.0      0.031   14.5   0.0    1.7  1  Laminin_G_1  Laminin G domain


Domain annotation for each model (and alignments):
>> Laminin_G_2  Laminin G domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.6   0.0   1.4e-08   0.00013      23     126 .]     546     653 ..     537     653 .. 0.90
   2 ?   -3.5   0.0       1.6   1.4e+04      20      39 ..    1799    1818 ..    1792    1842 .. 0.60

  Alignments for each domain:
  == domain 1  score: 22.6 bits;  conditional E-value: 1.4e-08
                  EEEETTEEEEEEESSS-EEEEE-SSSS-ESSSSEEEEEEECTTEEEEEECTS--CCCE-CSS............S.EEES--...TTHHHHCCTTTS- CS
  Laminin_G_2  23 lelkdgklvltynlgsgdtellssgkklndgewHsveverkgknltlsvDggetseanepgesqg.....ldleeslylGGl...epeepetaspvte 112
                  l++++g+l+++++   g  +lls ++ +ndg  H+v ve   ++ +l vDg + +ea  + +  +      +++    +GG+   ++ +   +s+ ++
   KOO20864.1 546 LSVHEGRLSFEVE---GAARLLS-TAAINDGVEHVVGVEFASGKYHLLVDGARATEASCSHADLQgaadpDHSDCVTMIGGVlmlPTGRDAASSVKSP 639
                  6788999999999...6666666.99***************************9999988888778998778888888******99999999999*** PP

                  B-CEEEEEEEECCE CS
  Laminin_G_2 113 gFvGcirdlrlnge 126
                  +F G i +l +nge
   KOO20864.1 640 QFSGRIFELSFNGE 653
                  ************96 PP

  == domain 2  score: -3.5 bits;  conditional E-value: 1.6
                   EEEEEEETTEEEEEEESSS- CS
  Laminin_G_2   20 flalelkdgklvltynlgsg 39  
                   +++l ++  +l +++ +g++
   KOO20864.1 1799 TVRLTIDTKRLTVNLAVGDT 1818
                   33444444444444444433 PP

>> Laminin_G_1  Laminin G domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.5   0.0   3.4e-06     0.031      24     130 ..     546     655 ..     538     656 .. 0.79

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 3.4e-06
                  EEEETTEEEEEEESSS-EEEEEEEEETTSSS-EEEEEEEETTEEEEEETTSC-EEEES-TT-SS...SEEECSE.EEESSSS..GSTCCCSCCCCCSB CS
  Laminin_G_1  24 leLvdGrlevsldlgsgaavvvsgqklndGkwhkvevernkrsgtlsvdgeervtgesplgatt...tlnvnkk.lyvGGlp..dekvkkealaists 115
                  l  ++Grl+++++   gaa + s++ +ndG +h v ve    +  l vdg +    + +++  +   +++ ++  +++GG+    ++  +   + s++
   KOO20864.1 546 LSVHEGRLSFEVE---GAARLLSTAAINDGVEHVVGVEFASGKYHLLVDGARATEASCSHADLQgaaDPDHSDCvTMIGGVLmlPTGRDAASSVKSPQ 640
                  6678899999885...6788889999************************9993333333333366666666655699994445599999999999** PP

                  -EEEEEEEEETTEEG CS
  Laminin_G_1 116 fkGcirdvsvnnkql 130
                  f+G i ++s+n++ l
   KOO20864.1 641 FSGRIFELSFNGELL 655
                  ***********9876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1954 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       467  (0.0260472); expected 358.6 (0.02)
Passed bias filter:                      366  (0.0204139); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.98u 0.27s 00:00:01.25 Elapsed: 00:00:00.46
# Mc/sec: 12708.73
//
Query:       KOO20865.1  [L=216]
Description: hypothetical protein Ctob_000133 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (216 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       743  (0.0414412); expected 358.6 (0.02)
Passed bias filter:                      303  (0.0169); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.42u 0.25s 00:00:00.67 Elapsed: 00:00:00.42
# Mc/sec: 1558.83
//
Query:       KOO20866.1  [L=265]
Description: hypothetical protein Ctob_000130 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (265 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       398  (0.0221987); expected 358.6 (0.02)
Passed bias filter:                      352  (0.019633); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.43u 0.25s 00:00:00.68 Elapsed: 00:00:00.41
# Mc/sec: 1917.01
//
Query:       KOO20867.1  [L=736]
Description: putative e3 ubiquitin-protein ligase herc1 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.8e-43  147.5   0.0      9e-43  146.9   0.0    1.2  1  HECT      HECT-domain (ubiquitin-transferase)


Domain annotation for each model (and alignments):
>> HECT  HECT-domain (ubiquitin-transferase)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  146.9   0.0     5e-47     9e-43      26     301 ..     449     730 ..     410     735 .. 0.86

  Alignments for each domain:
  == domain 1  score: 146.9 bits;  conditional E-value: 5e-47
                 EE-TTHHHHS....HHHHHHHHHHHHHTT--BSS-B-HHHHHHHTT-.---TCHHHHH-HHHHHHHHHHH..HS-GGG..................GT- CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...............xxxxxx RF
        HECT  26 ypkpssseeellklfeflGkvlGkaiyeeilldlpfsraflkfllgeekitledleeidpelakslkellslesntee...............vedlaL 109
                 + +p + + e+l+ fe++G+++G ai +e+ l+l++++ +lk l+g e+ tl+d e +d++ ++ +++++++     +               + + + 
  KOO20867.1 449 MLNPAVPSAERLRDFELMGAFMGVAIRSEVPLPLVLASTLLKGLVG-EPTTLDDYELCDKAKTDLIRRVREALP---SleigaspldaelfddIYSDQF 543
                 34444445557889********************************.5***********888888877774433...2345666666666555434466 PP

                 BSEEEEE.TTEEEEEESSTTGGGSB--TTTHHHHHHHHHHHHHTGGGHHHHHHHHHHHHTTS-HHHHTTS-HHHHHHHHBCSSS.--HHHHHHTEEEET CS
                 xxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        HECT 110 tFtipen.agasatieLipnGanipVtnenkkeYiklyvnyllkksvekqleaflkGfsevipskalklfdaeelellisGedelidvedlrrnteykg 207
                 +F++ ++ + a+  +eL p+G+++p+t   ++e+++l  ++ l ++ + ql a ++G+s ++p   +++++  e+e l+ G+ + ++v+dl++n+++++
  KOO20867.1 544 NFALLTSeLRAH-YHELRPGGRHTPLTYPCRHEWADLAEEFVL-HECDAQLAAVRRGLSAILPLGVMSVLTGAEFERLLTGDGD-WKVSDLKKNARVEE 639
                 888554434444.89**********************999999.99*************************************7.************99 PP

                 T--TTS.HHHHHHHHHHHHS-HHHHHHHHHHHHSSSS--TTCGGG-B--EEEEE-S..-TTS--EEEGGGTEEEE---SSHHHHHHHHHHHHHHH CS
                 xxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        HECT 208 gynaes.etiewlweilkefspeekrlfLqFvTgssrlPlgGfaelhpkftierkskedetrLPtahTCfnlLklpdYsskeilkekLltAieet 301
                   + e+ + +  lwe+l+e+s eek+lf +F+ gssr+P g  + +   + i r +++  ++LP ahTCf l++lp+Y+ske+ +ek l+A++++
  KOO20867.1 640 AHKPEHaKAVAHLWEMLDEMSVEEKALFCRFARGSSRMPPG-CKGI---MLILRPNSDGPEYLPVAHTCFFLIDLPPYTSKEMCREKFLIAMHNC 730
                 887665489******************************98.7766...777777779**********************************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (736 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       398  (0.0221987); expected 358.6 (0.02)
Passed bias filter:                      340  (0.0189637); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.62u 0.26s 00:00:00.88 Elapsed: 00:00:00.44
# Mc/sec: 5030.51
//
Query:       KOO20868.1  [L=511]
Description: hypothetical protein Ctob_000134 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (511 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       421  (0.0234815); expected 358.6 (0.02)
Passed bias filter:                      333  (0.0185733); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.52u 0.24s 00:00:00.76 Elapsed: 00:00:00.41
# Mc/sec: 3713.57
//
Query:       KOO20869.1  [L=532]
Description: natural resistance-associated macrophage protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
      2e-34  119.2  29.3    2.2e-33  115.7  17.1    3.3  3  Nramp        Natural resistance-associated macrophage protein
  ------ inclusion threshold ------
       0.12   11.9   0.1       0.12   11.9   0.1    2.4  2  SKG6         Transmembrane alpha-helix domain
       0.64   10.0   0.1       0.64   10.0   0.1    3.5  4  Ion_trans_2  Ion channel
        2.8    8.2   8.3         15    5.8   0.8    3.9  3  DUF3493      Low psii accumulation1 / Rep27


Domain annotation for each model (and alignments):
>> Nramp  Natural resistance-associated macrophage protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  115.7  17.1   4.9e-37   2.2e-33       2     294 ..      29     344 ..      28     353 .. 0.90
   2 !   11.1   0.1   3.2e-05      0.14     312     354 ..     400     445 ..     372     449 .. 0.69
   3 ?   -2.6   1.2      0.45     2e+03     310     346 ..     462     500 ..     451     523 .. 0.60

  Alignments for each domain:
  == domain 1  score: 115.7 bits;  conditional E-value: 4.9e-37
       Nramp   2 atdlqaGaqfGykLlwvlllstllaillqelsarLGlvTgkglaelirerl....pkkvsillwilaelaiiatdlaeviGaAialnllfgipl..... 91 
                 a  ++aGa f  +L+w + ++  +a++lqe  arL++ Tg++lae +r r+        + ++++l+++++ a++ ++++G+ +a+ +l++ ++     
  KOO20869.1  29 AMCSKAGADFQGQLIWCVCIAASIAWVLQEGTARLTITTGRTLAESVRHRTqsrrAASGRCIFAMLCVIGNFAYECNNFAGTMAAVDMLMTPSTlllnl 127
                 67799**********************************************7654445567888899***********************533367899 PP

       Nramp  92 ...............................lvgvlitavlvllllflekggyrklEaliialvlvialsFiaelflvkpdwgevlkglvvPslpgkes 159
                                                 +  l+   l+++ l+  +gg + +  l+ a+v+++ ++F++ l  + +++ +vl+glv P +p+ + 
  KOO20869.1 128 savdcspsdvnrtvgvftsepvsgggvlavrQAINLLLLPLTMATLA--SGGTKGISLLLSAVVGLMIVCFATALGSSGVHV-NVLAGLV-PLIPE-GG 221
                 99************************998666666666667777777..*******************************97.6999*99.*****.99 PP

       Nramp 160 lllavgilGatvmphnlflhsslvqerkitidrsekeealkyeriDtiialivaflinlailivaAavlysggkdvesledaaeaLepllGskaasvlF 258
                   la++++G+t  p nl l ss+ ++    +           +r  + +a +++++i++++l+v   v  +      +led+ ++Le l+G +a  v+F
  KOO20869.1 222 SELALAVVGTTAIPINLLLGSSIARSST--V---------AAMRRGVGLASSLSGFISVLVLLVGTLVPSRPPCVAFKLEDVSHVLEALVG-PAGRVMF 308
                 ***********************99888..4.........468999******************9999885555568**************.7****** PP

       Nramp 259 aigLlaaGlsStitgtlagqyvmegflglrislwlr 294
                 a+gL++aG+sS++t++l + +++e+++glr +  ++
  KOO20869.1 309 AMGLFGAGISSALTIPLGTTLALEELFGLRREEAAK 344
                 ****************************99887655 PP

  == domain 2  score: 11.1 bits;  conditional E-value: 3.2e-05
       Nramp 312 ligaele......lvkllvlsqvllslllPfaliplllltsskk.lMGef 354
                 li    +       +++++ +q++++lllP ++  lll +++ +  MG+ 
  KOO20869.1 400 LI----PsllqlpTISIIMTAQIVNGLLLPCVASALLLCLNDARsHMGSA 445
                 22....1333355679**************99988888887754389876 PP

  == domain 3  score: -2.6 bits;  conditional E-value: 0.45
       Nramp 310 illigaelelvkllvlsq..vllslllPfalipllllts 346
                 i+l+ a+++l+k lv +q  ++ + ++P+a++ l+ll+s
  KOO20869.1 462 IALYLASVVLLKRLVTAQasTAMASAVPVAAVGLVLLAS 500
                 333333333455666666223333356666666666665 PP

>> SKG6  Transmembrane alpha-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.1   2.6e-05      0.12      16      37 ..     486     507 ..     479     508 .. 0.88
   2 ?   -5.3   2.7         4   1.8e+04      10      16 ..     519     525 ..     519     525 .. 0.89

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 2.6e-05
        SKG6  16 VaVPVaViiivLlailifvrRR 37 
                  aVPVa++ +vLla ++ v RR
  KOO20869.1 486 SAVPVAAVGLVLLASCVYVLRR 507
                 59*************9999888 PP

  == domain 2  score: -5.3 bits;  conditional E-value: 4
        SKG6  10 vaIavaV 16 
                 +++a+aV
  KOO20869.1 519 ATVAAAV 525
                 79***99 PP

>> Ion_trans_2  Ion channel
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   0.1   0.00014      0.64      25      65 ..       9      54 ..       6      57 .. 0.79
   2 ?   -2.7   0.2       1.3     6e+03      56      70 ..     184     198 ..     171     203 .. 0.60
   3 ?   -0.4   0.0      0.26   1.2e+03      49      76 ..     449     475 ..     443     478 .. 0.76
   4 ?   -3.3   0.1       2.1   9.4e+03      58      72 ..     490     504 ..     480     507 .. 0.68

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.00014
                 HHHHHHHHHHHHTTS----SSTT---.....--HHHHHHHHHHHHH CS
  Ion_trans_2 25 fldalYfsfvtltTiGYGdivpetda.....grlftivyillGlal 65
                 ++dal +++ t +TiG G ++  ++a     g+l+ +v i   +a+
   KOO20869.1  9 LSDALMWTVLTASTIGPGTVAMCSKAgadfqGQLIWCVCIAASIAW 54
                 589***************9988766635555588888887777765 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 1.3
                  HHHHHHHHHHHHHHH CS
  Ion_trans_2  56 ivyillGlalfalfl 70 
                  ++ +++Gl+++ +++
   KOO20869.1 184 LLSAVVGLMIVCFAT 198
                  555666666655544 PP

  == domain 3  score: -0.4 bits;  conditional E-value: 0.26
                  ----HHHHHHHHHHHHHHHHHHHHHHHH CS
  Ion_trans_2  49 dagrlftivyillGlalfalflavlgkv 76 
                  +a rl ++++ ++G+al+++ + +l ++
   KOO20869.1 449 PA-RLNALMFPCVGIALYLASVVLLKRL 475
                  45.888899999*****99999777665 PP

  == domain 4  score: -3.3 bits;  conditional E-value: 2.1
                  HHHHHHHHHHHHHHH CS
  Ion_trans_2  58 yillGlalfalflav 72 
                  ++ +Gl+l+a ++ v
   KOO20869.1 490 VAAVGLVLLASCVYV 504
                  667788888777755 PP

>> DUF3493  Low psii accumulation1 / Rep27
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.1   0.3     0.023     1e+02      25      48 ..     182     205 ..     181     216 .. 0.86
   2 ?    0.9   0.0      0.11     5e+02      19      41 ..     254     276 ..     252     293 .. 0.83
   3 ?    5.8   0.8    0.0034        15      22      79 .]     456     509 ..     451     509 .. 0.82

  Alignments for each domain:
  == domain 1  score: 3.1 bits;  conditional E-value: 0.023
     DUF3493  25 afaaSaliGalifllrllaaraga 48 
                 ++  Sa++G++i+ + ++ + +g 
  KOO20869.1 182 SLLLSAVVGLMIVCFATALGSSGV 205
                 6789**********9999988665 PP

  == domain 2  score: 0.9 bits;  conditional E-value: 0.11
     DUF3493  19 RlflYlafaaSaliGalifllrl 41 
                 R+ + la+  S++i++l+ l+ +
  KOO20869.1 254 RRGVGLASSLSGFISVLVLLVGT 276
                 5666689999*****99998765 PP

  == domain 3  score: 5.8 bits;  conditional E-value: 0.0034
     DUF3493  22 lYlafaaSaliGalifllrllaaragaesapeleealenlaiqvgavalfvfLlrler 79 
                 ++ +++++  ++ ++ l rl++a+     ++ +++a++  a+ ++ +a +v++lr+++
  KOO20869.1 456 MFPCVGIALYLASVVLLKRLVTAQ----ASTAMASAVPVAAVGLVLLASCVYVLRRDQ 509
                 566666666777888888888888....66899**********************996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (532 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       794  (0.0442858); expected 358.6 (0.02)
Passed bias filter:                      362  (0.0201908); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.58u 0.26s 00:00:00.84 Elapsed: 00:00:00.44
# Mc/sec: 3605.32
//
Query:       KOO20870.1  [L=577]
Description: hypothetical protein Ctob_003938 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
     0.0014   17.6   3.2     0.0085   15.0   0.8    2.2  2  Calreticulin   Calreticulin family
  ------ inclusion threshold ------
      0.014   14.3   5.4      0.021   13.7   5.4    1.2  1  Spc7           Spc7 kinetochore protein
      0.069   13.1   0.2       0.21   11.5   0.2    1.8  1  DAP10          DAP10 membrane protein
      0.072   12.7   4.6       0.15   11.7   4.6    1.5  1  Lebercilin     Ciliary protein causing Leber congenital amaur
       0.23   11.7   3.7        1.4    9.2   0.4    2.9  3  Spidroin_MaSp  Major ampullate spidroin 1 and 2
          2    8.0   7.1        3.1    7.3   7.1    1.2  1  HAUS-augmin3   HAUS augmin-like complex subunit 3


Domain annotation for each model (and alignments):
>> Calreticulin  Calreticulin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.3   0.1      0.02        60     263     297 ..     323     359 ..     317     363 .. 0.72
   2 !   15.0   0.8   2.9e-06    0.0085     259     282 ..     414     437 ..     411     441 .. 0.93

  Alignments for each domain:
  == domain 1  score: 2.3 bits;  conditional E-value: 0.02
  Calreticulin 263 ekPedwdeeedgeweaplik..NpkCeeasgCgkwkp 297
                   e+P+ wd  +dg w+ +  k      +++sgCg+ +p
    KOO20870.1 323 EQPDTWDPAQDGAWAGTYNKpaDRFGNTSSGCGPLTP 359
                   79************87654311233457788887765 PP

  == domain 2  score: 15.0 bits;  conditional E-value: 2.9e-06
  Calreticulin 259 dpeaekPedwdeeedgeweaplik 282
                   dp+a++P dw+ +edg+weap+++
    KOO20870.1 414 DPSAKQPLDWNTDEDGTWEAPMLP 437
                   9********************986 PP

>> Spc7  Spc7 kinetochore protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   5.4     7e-06     0.021     153     261 ..      29     141 ..      16     147 .. 0.74

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 7e-06
        Spc7 153 edkelLekqeeeldellpeleeeka.....eleeeleklqeaaeelesidkeeLeelreelaelkaeieekkkelaelqeqleeleekieelkeqksel 246
                 +d + L++  ++l+++ ++ ++  +        +e+++  e   el + ++ +L++++++ +++++++++ ++e+++  e+l +++ek e++ ++ s++
  KOO20870.1  29 HDVAALTSAISKLKAAEQSCSADAEgtgdaGALAEVRSGYESISELLQFEPGDLAKYKKAKEKAQKKYSAVQAEVNDDDEELVSKAEKAEKA-AKLSKA 126
                 56666666666666666666665552222211222223333566777799***************************************998.999*** PP

        Spc7 247 eeeiaeaervleeck 261
                 ++++aeae+ + + +
  KOO20870.1 127 QAAVAEAEKAVAKAE 141
                 *********998765 PP

>> DAP10  DAP10 membrane protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.2   7.1e-05      0.21      24      46 ..     350     372 ..     344     381 .. 0.88

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 7.1e-05
       DAP10  24 scsGcGplslpllaGlvaadavv 46 
                 + sGcGpl+  l a lv++dav 
  KOO20870.1 350 TSSGCGPLTPALDAALVSSDAVT 372
                 579******************96 PP

>> Lebercilin  Ciliary protein causing Leber congenital amaurosis disease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   4.6   4.9e-05      0.15      46     134 ..      59     145 ..      19     154 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 4.9e-05
  Lebercilin  46 kaLskyedteaeLpqllarhneEvrvlrerlRksqekerelekklkekeaellrlkdklkklkkLsedknLaereeLqkkLeeleakle 134
                  aL  + +  +++++ll+    ++  +++   k+q+k+++++ ++++ ++el +  +k +k  kLs+++     +e +k ++++ea   
  KOO20870.1  59 GALAEVRSGYESISELLQFEPGDLAKYKKAKEKAQKKYSAVQAEVNDDDEELVSKAEKAEKAAKLSKAQAA--VAEAEKAVAKAEAASV 145
                 578888888999******************************************************99876..5555666666665544 PP

>> Spidroin_MaSp  Major ampullate spidroin 1 and 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.2   0.4   0.00048       1.4      10      52 ..      11      53 ..       5      67 .. 0.80
   2 ?   -3.7   0.2         5   1.5e+04      38      47 ..     124     133 ..     110     146 .. 0.48
   3 ?    2.1   0.0     0.078   2.3e+02      26      59 ..     286     319 ..     260     323 .. 0.81

  Alignments for each domain:
  == domain 1  score: 9.2 bits;  conditional E-value: 0.00048
                   HHHHHHHHHHHHHCCCSS--TTCHHHHHHHHHHHHHCCSTTT- CS
  Spidroin_MaSp 10 sassRvssavsslvsagalnvaalsnvissvvsqvsasnpgls 52
                   +a   + s+ s++++ag+ +vaal ++is++ ++ ++ +++++
     KOO20870.1 11 AAPHVLFSVRSEILAAGSHDVAALTSAISKLKAAEQSCSADAE 53
                   5556667899********************9988777665554 PP

  == domain 2  score: -3.7 bits;  conditional E-value: 5
                    HHHHHHHHCC CS
  Spidroin_MaSp  38 ssvvsqvsas 47 
                    s++ ++v+ +
     KOO20870.1 124 SKAQAAVAEA 133
                    2333333333 PP

  == domain 3  score: 2.1 bits;  conditional E-value: 0.078
                    SS--TTCHHHHHHHHHHHHHCCSTTT-CCHHHHH CS
  Spidroin_MaSp  26 galnvaalsnvissvvsqvsasnpglsscdvlvq 59 
                    g+ + a ls v s+++ + +a ++g++ cd++  
     KOO20870.1 286 GQPDEALLSVVASEIAKAKAAKAKGMEHCDATAG 319
                    556666677777777777778889******9865 PP

>> HAUS-augmin3  HAUS augmin-like complex subunit 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.3   7.1     0.001       3.1      49     140 ..      41     134 ..      38     148 .. 0.77

  Alignments for each domain:
  == domain 1  score: 7.3 bits;  conditional E-value: 0.001
  HAUS-augmin3  49 LeeaLktiepsdlkqedvellevileeeeesleaLeqelqeLqkekalklkrlnkLqvqaaslqqelrkleee..ekeakkklkeaqeelraen 140
                   L+ a ++++   + + d  +l +  +  e+  e L+ e  +L k+k+ k+k  +k+ ++ a+ ++ +++l ++  + e++ kl +aq++++++ 
    KOO20870.1  41 LKAAEQSCSADAEGTGDAGALAEVRSGYESISELLQFEPGDLAKYKKAKEKAQKKYSAVQAEVNDDDEELVSKaeKAEKAAKLSKAQAAVAEAE 134
                   6777788885555556666667777777999999******************************999999765105566678888888776554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (577 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1480  (0.0825478); expected 358.6 (0.02)
Passed bias filter:                      779  (0.0434492); expected 358.6 (0.02)
Passed Vit filter:                       108  (0.00602376); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.72u 0.29s 00:00:01.01 Elapsed: 00:00:00.44
# Mc/sec: 3926.93
//
Query:       KOO20871.1  [L=214]
Description: hypothetical protein Ctob_003941 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
        4.3    6.7  12.8        5.2    6.4  12.8    1.2  1  SDA1      SDA1
        8.1    4.6   8.6         11    4.1   8.6    1.2  1  CDC45     CDC45-like protein


Domain annotation for each model (and alignments):
>> SDA1  SDA1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.4  12.8   0.00058       5.2      96     181 ..      64     179 ..      14     209 .. 0.45

  Alignments for each domain:
  == domain 1  score: 6.4 bits;  conditional E-value: 0.00058
        SDA1  96 ddeddeedwevesdddseedseggwidvesdeeeieesdesedeeeeeeeeeekeekeeeeeeee...............eeeeeeeeeeeeeekekkk 179
                 d+   ++++e e  + + e  ++g  +ves+ ee ee +   +e+e e+ e++++++ ee+ + +               ee +   eee+e e+    
  KOO20871.1  64 DSTIASDEEECEACEAD-EGCDEGNTEVESEPEEPEEVE--PEEAEVERLEAASDSEAEEDGAGDlvfefdenggrirpeEEAAHMAEEEAEMET---- 155
                 22222233333322222.222333355655555333333..222222222222222222222222455555555544432222222222222222.... PP

        SDA1 180 k......................k 181
                                         
  KOO20871.1 156 RgavveqpsasrssrrrsrqvqiL 179
                 023344444444444443333320 PP

>> CDC45  CDC45-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.1   8.6    0.0013        11     116     196 ..      67     184 ..      34     211 .. 0.29

  Alignments for each domain:
  == domain 1  score: 4.1 bits;  conditional E-value: 0.0013
       CDC45 116 leeereayealeeeeesdeede........................eeeeeddddeeeeeeeeedeedeeedeeeskkkrk.......sksdeeee... 180
                 +++++e++ea e +e +de ++                                 +++e ee+ +++   e +e+ ++ r        +++    e   
  KOO20871.1  67 IASDEEECEACEADEGCDEGNTevesepeepeevepeeaeverleaA--------SDSEAEEDGAGDLVFEFDENGGRIRPeeeaahmAEE----Eaem 153
                 33333333333333333311111111111111111111111111110........111111111111111111111111111111111111....1122 PP

       CDC45 181 .......sddddersrkrrrse........p 196
                        ++ +++rs++rr ++         
  KOO20871.1 154 etrgavvEQPSASRSSRRRSRQvqilqqaaG 184
                 2333443222223333333333233322220 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (214 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       954  (0.0532099); expected 358.6 (0.02)
Passed bias filter:                      356  (0.0198561); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.44u 0.23s 00:00:00.67 Elapsed: 00:00:00.39
# Mc/sec: 1646.81
//
Query:       KOO20872.1  [L=788]
Description: vacuolar protein sorting-associated protein 51-like protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.7e-24   85.7   5.3      5e-24   84.2   1.9    3.1  3  Vps51           Vps51/Vps67
    1.4e-12   47.8   3.9    8.4e-12   45.3   0.4    2.4  2  Sec5            Exocyst complex component Sec5
    2.2e-12   46.3   3.5    2.2e-12   46.3   3.5    2.1  2  Dor1            Dor1-like family
    3.4e-05   23.6   6.1    0.00018   21.2   1.3    2.8  2  DUF4795         Domain of unknown function (DUF4795)
    3.9e-05   23.8   2.4    3.9e-05   23.8   2.4    2.5  2  COG2            COG (conserved oligomeric Golgi) complex comp
    9.6e-05   21.5   2.0    9.6e-05   21.5   2.0    2.2  2  Vps53_N         Vps53-like, N-terminal
     0.0042   16.4   2.8     0.0042   16.4   2.8    1.7  2  Vps54_N         Vacuolar-sorting protein 54, of GARP complex
     0.0082   16.3   0.8     0.0082   16.3   0.8    2.8  2  COG5            Golgi transport complex subunit 5
  ------ inclusion threshold ------
      0.014   15.4   3.8      0.014   15.4   3.8    2.4  2  CENP-F_leu_zip  Leucine-rich repeats of kinetochore protein C
      0.023   14.5   3.5       0.32   10.8   0.5    2.5  2  Nsp1_C          Nsp1-like C-terminal region
       0.03   14.7   4.0      0.093   13.2   0.4    2.9  2  Enkurin         Calmodulin-binding
      0.035   14.3   0.3       0.65   10.2   0.2    2.8  3  RNase_3_N       Ribonuclease III N-terminal domain
      0.086   12.6   3.9       0.71    9.7   0.1    3.1  3  Phage_GP20      Phage minor structural protein GP20
        1.2    9.0   5.4        1.5    8.6   0.5    2.5  2  SKA1            Spindle and kinetochore-associated protein 1
        1.9    8.1   9.9          2    8.0   2.0    2.5  2  Lebercilin      Ciliary protein causing Leber congenital amau
        4.7    7.5   8.4         38    4.6   0.2    4.1  3  DUF948          Bacterial protein of unknown function (DUF948
        5.1    7.6   7.9        1.9    9.0   0.3    3.9  4  ZapB            Cell division protein ZapB
        5.9    6.2  13.2      0.034   13.5   0.9    2.8  3  GAS             Growth-arrest specific micro-tubule binding


Domain annotation for each model (and alignments):
>> Vps51  Vps51/Vps67
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   84.2   1.9     5e-27     5e-24       1      86 [.      37     122 ..      37     123 .. 0.98
   2 ?   -1.6   0.1         3     3e+03      67      77 ..     427     437 ..     413     462 .. 0.57
   3 ?    0.5   0.0      0.63   6.3e+02      39      64 ..     488     513 ..     483     521 .. 0.82

  Alignments for each domain:
  == domain 1  score: 84.2 bits;  conditional E-value: 5e-27
       Vps51   1 ldspdfdaeayvrellakstlkellkveasllseiraldselkalVydnYskLisasdtIrkmksemdkldqklselkqaiskiae 86 
                 +ds++f +++yv  +l+ ++l+el ++ + ++sei+ lds+++ lVy+nY+k+isa+dtIrkmk  ++++++++ el ++++ i++
  KOO20872.1  37 IDSSAFTVDKYVGTMLQYKSLEELVHRGNAMVSEIKSLDSDMQMLVYENYNKFISATDTIRKMKHRVEDMESQMIELEKNMGTISS 122
                 699******************************************************************************99876 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 3
       Vps51  67 mdkldqklsel 77 
                 +++l++kls +
  KOO20872.1 427 LQQLQDKLSAQ 437
                 33333333322 PP

  == domain 3  score: 0.5 bits;  conditional E-value: 0.63
       Vps51  39 dselkalVydnYskLisasdtIrkmk 64 
                 d   k lV++ Y  L+  ++t r+ +
  KOO20872.1 488 DGMAKHLVGRLYAALLGLAKTARESR 513
                 666799**************998755 PP

>> Sec5  Exocyst complex component Sec5
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.3   0.4   8.5e-15   8.4e-12       2     176 ..      76     235 ..      75     240 .. 0.85
   2 ?    3.2   0.2     0.066        65      18      58 ..     419     463 ..     417     473 .. 0.77

  Alignments for each domain:
  == domain 1  score: 45.3 bits;  conditional E-value: 8.5e-15
        Sec5   2 eelkslvksnftkfvkvkdtldqiykefseskteaqedslveeLeeslneairkttllfkpvlenkekadklraaleviernkflFnLPksLkesiakg 100
                 +++++lv +n +kf+++ dt+ +++++++ +++       + eLe+++  + ++++++   +  ++ + +kl+ a++ +++ +fl++LP  L+++++++
  KOO20872.1  76 SDMQMLVYENYNKFISATDTIRKMKHRVEDMES------QMIELEKNMGTISSASESVDSSLSARRGQLEKLNGAKKNLTKLQFLMDLPARLQRCVRDE 168
                 6789************************76666......3469******************************************************** PP

        Sec5 101 dydklindYkkakslfestrqslveedkkqvkvfkkvwsevekiieeyrkklwekLleldesqeeflkliskLleL 176
                 +++++++d+ ka++ ++            +v+ f+ + +e + ii+++ + l  +++++  +  e   + + Ll+L
  KOO20872.1 169 QFETAVDDFRKARRILRAV---------GNVSSFRGIEDEATLIIKRLAQVLSVRIQQPALQLAELGLTTRLLLQL 235
                 **************99887.........467777777777777777777777777776666666655555555555 PP

  == domain 2  score: 3.2 bits;  conditional E-value: 0.066
        Sec5  18 vkdtldqiykefseskteaqed....slveeLeeslneairkttl 58 
                 +k ++d+++++++ + +++ +d     ++++L+e+l ea ++ + 
  KOO20872.1 419 AKRAMDSLLQQLQDKLSAQVKDmqgaTNSASLQEQLHEAGKAISA 463
                 5788899999997776667777777799999***99998877655 PP

>> Dor1  Dor1-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.3   3.5   2.2e-15   2.2e-12       4     175 ..      52     224 ..      49     244 .. 0.95
   2 ?   -0.2   0.2      0.32   3.2e+02     136     173 ..     399     436 ..     390     468 .. 0.80

  Alignments for each domain:
  == domain 1  score: 46.3 bits;  conditional E-value: 2.2e-15
        Dor1   4 lsskpleelekepelLaeeaeeilaqiqdLarknyktlidaaealeairqelediraqledLvlklpkLteectrfskkaeeisekrkenkllldkheq 102
                 l+ k leel  + +++ +e++ ++  +q L  +ny+ +i a++ ++++   +ed++ q+ +L +++  ++++ + +  +++    + ++ + ++++ ++
  KOO20872.1  52 LQYKSLEELVHRGNAMVSEIKSLDSDMQMLVYENYNKFISATDTIRKMKHRVEDMESQMIELEKNMGTISSASESVDSSLSARRGQLEKLNGAKKNLTK 150
                 77889999*99******************************************************************9999999999999999****** PP

        Dor1 103 llellelPqlmdrcirngyydealeLeayvsrLkqristnpviqsiaaeveetvqelleqLiqkLrsp.lqLae 175
                 l  l +lP +++rc+r  +++ a +    ++r  + +++ +    i +e+   ++ l++ L  ++++p lqLae
  KOO20872.1 151 LQFLMDLPARLQRCVRDEQFETAVDDFRKARRILRAVGNVSSFRGIEDEATLIIKRLAQVLSVRIQQPaLQLAE 224
                 ***********************87667788999999**99***************************999998 PP

  == domain 2  score: -0.2 bits;  conditional E-value: 0.32
        Dor1 136 kqristnpviqsiaaeveetvqelleqLiqkLrsplqL 173
                 + ++++  + q   + +e++ +  +++L+q+L+  l +
  KOO20872.1 399 HALVPQAKIMQRATRAAETLAKRAMDSLLQQLQDKLSA 436
                 55667777777777888888888888888888877654 PP

>> DUF4795  Domain of unknown function (DUF4795)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.2   1.3   1.8e-07   0.00018       7     103 ..      94     186 ..      76     259 .. 0.82
   2 ?    3.7   0.2      0.04        40      90     142 ..     420     458 ..     371     473 .. 0.60

  Alignments for each domain:
  == domain 1  score: 21.2 bits;  conditional E-value: 1.8e-07
     DUF4795   7 ellkklqeaieklqeelekleekvkelekrledkekklealkkqieelekvkadkeeveeelaekadkeaLatkvsrdqfDeakkeLekmleellek 103
                  ++ k+++ +e+++ ++ +le+ +  +++ +e  +++l a + q+e+l+ +k++ ++++  ++++a    L++ v ++qf++a+++++k  + +l  
  KOO20872.1  94 DTIRKMKHRVEDMESQMIELEKNMGTISSASESVDSSLSARRGQLEKLNGAKKNLTKLQFLMDLPA---RLQRCVRDEQFETAVDDFRKA-RRILRA 186
                 45899***********************************************************98...7999*************9875.344443 PP

  == domain 2  score: 3.7 bits;  conditional E-value: 0.04
     DUF4795  90 kkeLekmleellekleeqeealkkaldtLqeelkekldrlelepLkeqleerl 142
                 k +++  l++l +kl++q ++++               + +  +L+eql e  
  KOO20872.1 420 KRAMDSLLQQLQDKLSAQVKDMQG--------------ATNSASLQEQLHEAG 458
                 233333333333333333333333..............444444444444444 PP

>> COG2  COG (conserved oligomeric Golgi) complex component, COG2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.8   2.4   3.9e-08   3.9e-05      11     121 ..      40     156 ..      30     166 .. 0.73
   2 ?    0.4   0.2      0.62   6.2e+02      96     112 ..     423     439 ..     381     469 .. 0.55

  Alignments for each domain:
  == domain 1  score: 23.8 bits;  conditional E-value: 3.9e-08
        COG2  11 pdFdpdqFvselrhgvpLeslrr...dLeaylkllekellelvnedyadFvslSghLvglqeeleevesplaaarkkvesvreklsereeeveskleea 106
                  +F +d++v ++ ++++Le+l +    + +  k+l++++  lv e+y+ F+s  +  + ++ ++e +es++ ++ k++  + ++ +   + ++++  + 
  KOO20872.1  40 SAFTVDKYVGTMLQYKSLEELVHrgnAMVSEIKSLDSDMQMLVYENYNKFISATDTIRKMKHRVEDMESQMIELEKNMGTISSASESVDSSLSARRGQL 138
                 68*******************8622257777889**********************************9987777766555555555555555555555 PP

        COG2 107 keleekr...ellklllk 121
                 ++l+ ++     l+ l++
  KOO20872.1 139 EKLNGAKknlTKLQFLMD 156
                 555544411144444444 PP

  == domain 2  score: 0.4 bits;  conditional E-value: 0.62
        COG2  96 eeeveskleeakeleek 112
                 +  + ++l+++ +++ k
  KOO20872.1 423 MDSLLQQLQDKLSAQVK 439
                 33333333333222222 PP

>> Vps53_N  Vps53-like, N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.5   2.0   9.7e-08   9.6e-05      20     147 ..      54     184 ..      42     219 .. 0.75
   2 ?    0.3   0.1      0.26   2.6e+02      63     205 ..     420     457 ..     355     472 .. 0.56

  Alignments for each domain:
  == domain 1  score: 21.5 bits;  conditional E-value: 9.7e-08
     Vps53_N  20 lanideli...kklqeeikklddeiksvvraqan.......vgekgkealeeaqkaieelfqkikeikdkaekseemvkeitrdIkqLDiAKknlttsi 108
                 ++ ++el+   + +  eik ld +++ +v ++ n       + +k k+ +e++++ + el++++ +i + +e+ +++++    ++ +L  AKknlt   
  KOO20872.1  54 YKSLEELVhrgNAMVSEIKSLDSDMQMLVYENYNkfisatdTIRKMKHRVEDMESQMIELEKNMGTISSASESVDSSLSARRGQLEKLNGAKKNLT--- 149
                 6667777766689999********9999988766332111134567888999******************************************98... PP

     Vps53_N 109 TtlkrLkmLvtavesleallskrsykeivsllqavlqll 147
                     +L+ L++   +l+  ++ ++++ +v  ++    +l
  KOO20872.1 150 ----KLQFLMDLPARLQRCVRDEQFETAVDDFRKARRIL 184
                 ....57888888888888888888888877665544444 PP

  == domain 2  score: 0.3 bits;  conditional E-value: 0.26
     Vps53_N  63 qkaieelfqkikeikdkaekseemvkeitrdIkqLDiAKknlttsiTtlkrLkmLvtavesleallskrsykeivsllqavlqllnhFekYkdvekIae 161
                 ++a+                                                                                               
  KOO20872.1 420 KRAM----------------------------------------------------------------------------------------------- 423
                 3333............................................................................................... PP

     Vps53_N 162 LsesisklkkslksqiledfkeaFssgsqkeketgnllekleda 205
                           sl +q+ ++++++    +q+ ++ + l e+l++a
  KOO20872.1 424 ---------DSLLQQLQDKLSAQV-KDMQGATNSASLQEQLHEA 457
                 .........334444444444443.3444444444444444444 PP

>> Vps54_N  Vacuolar-sorting protein 54, of GARP complex
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   2.8   4.2e-06    0.0042      17     175 ..      41     198 ..      33     222 .. 0.79
   2 ?   -3.4   0.2       4.5   4.5e+03     106     127 ..     419     441 ..     404     461 .. 0.49

  Alignments for each domain:
  == domain 1  score: 16.4 bits;  conditional E-value: 4.2e-06
     Vps54_N  17 kyeLkklpddelsyesiekevkk...lksqhdvvskklsqlilekreefvkelseveeiekelkesvvickngrraLdlakkeltrtsLellakskkrq 112
                  +  +k   + l+y+s+e+ v++   + s+ + +++ ++ l+ e++++f +  + ++++++ +++   ++ +  +++ ++ +    ++  l a++ + +
  KOO20872.1  41 AFTVDKYVGTMLQYKSLEELVHRgnaMVSEIKSLDSDMQMLVYENYNKFISATDTIRKMKHRVEDMESQMIELEKNMGTISSASESVDSSLSARRGQLE 139
                 555555555557777777766552225667788899******************************99999999999999998888999********** PP

     Vps54_N 113 llkkllktltaikelrelekrleelleeedysaAiqllletkqlaekysqyncvqelssklqe 175
                  l+  +k+lt+++ l +l  rl++ + +e++  A++ + + ++++ +  + ++ +     +++
  KOO20872.1 140 KLNGAKKNLTKLQFLMDLPARLQRCVRDEQFETAVDDFRKARRILRAVGNVSSFRG----IED 198
                 ***********************************999888887766555444433....333 PP

  == domain 2  score: -3.4 bits;  conditional E-value: 4.5
     Vps54_N 106 akskkrqllkkllktlt.aikel 127
                 ak+    ll++l ++l+ ++k +
  KOO20872.1 419 AKRAMDSLLQQLQDKLSaQVKDM 441
                 33333333444433332123333 PP

>> COG5  Golgi transport complex subunit 5
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.8   8.2e-06    0.0082       9     132 .]      43     161 ..      38     161 .. 0.81
   2 ?   -0.4   0.5       1.3   1.2e+03      49      72 ..     415     438 ..     404     476 .. 0.59

  Alignments for each domain:
  == domain 1  score: 16.3 bits;  conditional E-value: 8.2e-06
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-TTHHHHHHHHHHHH CS
        COG5   9 dpksfanallkatnnnddteldlstplkrlnydiqeldkrlrqlitsnhleLlehlskskslssvlselksslesLsasyerlkskvlepyeeaeklqs 107
                 ++ ++  ++l+      ++ + l  + + + + i+ ld+ ++ l+ +n+++ ++ ++++++ +  +++++s++++L++ +  ++s       +++ ++ 
  KOO20872.1  43 TVDKYVGTMLQ-----YKSLEELVHRGNAMVSEIKSLDSDMQMLVYENYNKFISATDTIRKMKHRVEDMESQMIELEKNMGTISSASESVDSSLSARRG 136
                 55555555555.....444444555555566789*******************************************9999999998888888999999 PP

                 HHHHHHHHHHHHHHHHHHHHHHHHH CS
        COG5 108 alkrlhqtldLlrralrflhlskqL 132
                 +l++l  +++ l ++ +++ l ++L
  KOO20872.1 137 QLEKLNGAKKNLTKLQFLMDLPARL 161
                 9999999999888888888887776 PP

  == domain 2  score: -0.4 bits;  conditional E-value: 1.3
                 XXXXXXXXXXXXXXXXXXXXXXXX CS
        COG5  49 lrqlitsnhleLlehlskskslss 72 
                  ++l ++  ++Ll++l++++s++ 
  KOO20872.1 415 AETLAKRAMDSLLQQLQDKLSAQV 438
                 455556666666666666666554 PP

>> CENP-F_leu_zip  Leucine-rich repeats of kinetochore protein Cenp-F/LEK1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.4   3.8   1.4e-05     0.014      12     109 ..      57     151 ..      52     175 .. 0.85
   2 ?   -1.3   0.2       2.1   2.1e+03      65      76 ..     424     435 ..     382     462 .. 0.60

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 1.4e-05
  CENP-F_leu_zip  12 LKeserkadsLkdkvenLerelemse.enqekvileaEtskaevetlkeeieelaeelreleldLvalrsekeeLekelqkkqervseLeslnss 105
                     L e  ++ + +   +++L+++++m+  en +k i   +    ++ ++k+ +e +++++ ele ++ +++s  e+++ +l   + + + L+ ++  
      KOO20872.1  57 LEELVHRGNAMVSEIKSLDSDMQMLVyENYNKFISATD----TIRKMKHRVEDMESQMIELEKNMGTISSASESVDSSLSARRGQLEKLNGAKKN 147
                     55666677778888999999999976256666666555....57789*******************************************99999 PP

  CENP-F_leu_zip 106 lenl 109
                     l++l
      KOO20872.1 148 LTKL 151
                     8875 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 2.1
  CENP-F_leu_zip  65 aeelreleldLv 76 
                      + l++l+ +L+
      KOO20872.1 424 DSLLQQLQDKLS 435
                     222222222222 PP

>> Nsp1_C  Nsp1-like C-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.5   0.00032      0.32      14     106 ..      51     143 ..      39     151 .. 0.89
   2 ?    3.9   0.1     0.044        44       6      61 ..     408     463 ..     403     473 .. 0.75

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00032
      Nsp1_C  14 slknktldelinkWtteLeeqekeFeeqakkvneWDrvLvengekIskLysevleaeqeqnkidqeLeyiesqqdeLeslLdnyEkeleells 106
                  l++k+l+el+++ +   +e ++  ++    v e  +  ++  + I+k+++ v++ e++  ++++++  i+s  +  +s L     +le+l++
  KOO20872.1  51 MLQYKSLEELVHRGNAMVSEIKSLDSDMQMLVYENYNKFISATDTIRKMKHRVEDMESQMIELEKNMGTISSASESVDSSLSARRGQLEKLNG 143
                 49*******************999999999999999999***************************************999998888888875 PP

  == domain 2  score: 3.9 bits;  conditional E-value: 0.044
      Nsp1_C   6 veiapsaas.lknktldelinkWtteLeeqekeFeeqakkvneWDrvLvengekIsk 61 
                 ++ a+ aa+ l +  +d+l+++ + +L+ q k  +  a++ ++  + L e g+ Is+
  KOO20872.1 408 MQRATRAAEtLAKRAMDSLLQQLQDKLSAQVKDMQG-ATNSASLQEQLHEAGKAISA 463
                 5555566666*********************99765.45556667778888888876 PP

>> Enkurin  Calmodulin-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.4   9.4e-05     0.093      57      96 ..      82     122 ..      22     124 .. 0.88
   2 ?    1.5   0.2       0.4   3.9e+02      32      65 ..     412     445 ..     371     460 .. 0.80

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 9.4e-05
     Enkurin  57 lnkeyqslpllidtlskrqrK.eklEkeLkqlEkdikllek 96 
                 ++++y+++   +dt++k++++ e++E+++ +lEk++ ++++
  KOO20872.1  82 VYENYNKFISATDTIRKMKHRvEDMESQMIELEKNMGTISS 122
                 5788999999******99877589***********999886 PP

  == domain 2  score: 1.5 bits;  conditional E-value: 0.4
     Enkurin  32 ppgmrllseeerqellegLkkkweelnkeyqslp 65 
                  ++ ++l +   ++ll++L++k++  +k++q+ +
  KOO20872.1 412 TRAAETLAKRAMDSLLQQLQDKLSAQVKDMQGAT 445
                 3667788888889999999999999999998876 PP

>> RNase_3_N  Ribonuclease III N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.1       5.5   5.5e+03      19      43 ..      84     108 ..      67     121 .. 0.56
   2 ?   -0.1   0.0       1.1   1.1e+03      65      96 ..     306     337 ..     297     342 .. 0.81
   3 ?   10.2   0.2   0.00066      0.65      12      77 ..     386     452 ..     382     459 .. 0.88

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 5.5
                 HHHHHHHHH---HHHHHHHHHSGCS CS
   RNase_3_N  19 esykriielspnlktyeealeneek 43 
                 e+y++ i+ + +++  ++ +e+ e+
  KOO20872.1  84 ENYNKFISATDTIRKMKHRVEDMES 108
                 5555555555555555555554444 PP

  == domain 2  score: -0.1 bits;  conditional E-value: 1.1
                 HHHHTT--THHHHHHHHHHH--TT--S-SSTT CS
   RNase_3_N  65 sleelgklplleeisnyeskfkssdskPilse 96 
                  l e+   +lle + +++++f  +  +P+l +
  KOO20872.1 306 RLGEAFVPQLLELLAEWQERFVGETPEPVLPD 337
                 5556666789999****************976 PP

  == domain 3  score: 10.2 bits;  conditional E-value: 0.00066
                 HHHHHHHHHHHHHHHH---HHHHHHHHHSGCSS-GGGHHH.HCSHHHHHHHHHHHHHHTT--THHHH CS
   RNase_3_N  12 havtklvesykriielspnlktyeealeneeklpveilpa.lsRykLklAaelksleelgklpllee 77 
                 + v klv +++++  l p+ k+ ++a +  e+l   ++ + l+  + kl+a++k ++ +  +  l+e
  KOO20872.1 386 QGVRKLVGALDEVHALVPQAKIMQRATRAAETLAKRAMDSlLQQLQDKLSAQVKDMQGATNSASLQE 452
                 679******************************99999872577899*********99988888776 PP

>> Phage_GP20  Phage minor structural protein GP20
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   0.1   0.00072      0.71       9      55 ..     105     152 ..      91     173 .. 0.89
   2 ?    2.0   0.8      0.16   1.6e+02      23      64 ..     419     460 ..     396     472 .. 0.69
   3 ?   -1.7   0.0       2.3   2.3e+03      80     107 ..     726     753 ..     722     759 .. 0.71

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 0.00072
  Phage_GP20   9 aengkdit.kakldeveeerdtlkeqlkdrdkqLedLkkkakdneeLq 55 
                  ++ ++i  ++++ ++ ++ +++ ++l +r +qLe+L +++k+ ++Lq
  KOO20872.1 105 DMESQMIElEKNMGTISSASESVDSSLSARRGQLEKLNGAKKNLTKLQ 152
                 567788988999****************************99999997 PP

  == domain 2  score: 2.0 bits;  conditional E-value: 0.16
  Phage_GP20  23 veeerdtlkeqlkdr.dkqLedLkkkakdneeLqkqieelqak 64 
                 ++ + d+l +ql+d+   q++d++++  ++++Lq+q+ e  ++
  KOO20872.1 419 AKRAMDSLLQQLQDKlSAQVKDMQGA-TNSASLQEQLHEAGKA 460
                 55666777777776535677777776.6677777777776555 PP

  == domain 3  score: -1.7 bits;  conditional E-value: 2.3
  Phage_GP20  80 kldnaielaLkeakaknekavkalldkd 107
                 +ld a       +++ +e av alld  
  KOO20872.1 726 QLDCAFLRWVLPSNVDDEGAVLALLDEA 753
                 55555555566678999*********65 PP

>> SKA1  Spindle and kinetochore-associated protein 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.6   0.5    0.0015       1.5      20      78 ..      92     149 ..      71     176 .. 0.87
   2 ?    1.9   0.5      0.17   1.7e+02      23      92 ..     386     449 ..     367     474 .. 0.45

  Alignments for each domain:
  == domain 1  score: 8.6 bits;  conditional E-value: 0.0015
                 ....XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.....XXXXXXXXX CS
        SKA1  20 llkedlskieaevsaleellnklkkelqeeeeaikklkkeieaslkqqeklqhlkenlp 78 
                 + + +++k+++ v+ +e+++ +l+k + + ++a +++ + + a + q ekl+  k+nl 
  KOO20872.1  92 A-TDTIRKMKHRVEDMESQMIELEKNMGTISSASESVDSSLSARRGQLEKLNGAKKNLT 149
                 3.6789***************************************99999*99999986 PP

  == domain 2  score: 1.9 bits;  conditional E-value: 0.17
                 .XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.....XXXXXXXXXXXXXXXXXXXXXXX CS
        SKA1  23 edlskieaevsaleellnklkkelqeeeeaikklkkeieaslkqqeklqhlkenlpshlpkktaassaee 92 
                 + ++k+  ++ +++ l+ + k  +q+ + a ++l k    sl     lq+l+++l +++++ + a+++ +
  KOO20872.1 386 QGVRKLVGALDEVHALVPQAKI-MQRATRAAETLAKRAMDSL-----LQQLQDKLSAQVKDMQGATNSAS 449
                 4444444333333333333322.2333333333332333333.....44444444444444444444333 PP

>> Lebercilin  Ciliary protein causing Leber congenital amaurosis disease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.0   2.0     0.002         2      35     122 ..      55     143 ..      50     166 .. 0.85
   2 ?    3.9   1.1     0.036        36      67     131 ..     396     459 ..     388     465 .. 0.72

  Alignments for each domain:
  == domain 1  score: 8.0 bits;  conditional E-value: 0.002
  Lebercilin  35 klLkrlqkrqekaLskyedteaeLpqllarhneEvrvlrerlRksqekerelekklkekeaellrlkdklkklkk.LsedknLaereeL 122
                 k L++l +r ++  s  ++ ++++++l+ +  +      + +Rk++ +++++e+++ e e+++  ++++ +  ++ Ls  +  +e+ + 
  KOO20872.1  55 KSLEELVHRGNAMVSEIKSLDSDMQMLVYENYNKFISATDTIRKMKHRVEDMESQMIELEKNMGTISSASESVDSsLSARRGQLEKLNG 143
                 7899*********************************************************9999998888877767766655455444 PP

  == domain 2  score: 3.9 bits;  conditional E-value: 0.036
  Lebercilin  67 eEvrvlrerlRksqekerelekklkek.eaellrlkdklkklkkLsedknLaereeLqkkLeelea 131
                 +Ev++l  + + +q + r++e   k++ ++ l++l+dkl++   + + +     + Lq++L+e+ +
  KOO20872.1 396 DEVHALVPQAKIMQRATRAAETLAKRAmDSLLQQLQDKLSAQ--VKDMQGATNSASLQEQLHEAGK 459
                 789999999999999999999887776255667788888764..4444566667777777777655 PP

>> DUF948  Bacterial protein of unknown function (DUF948)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.6   0.2     0.038        38      24      84 ..      92     127 ..      78     152 .. 0.58
   2 ?    3.4   0.3     0.092        92      21      62 ..     401     443 ..     385     467 .. 0.68
   3 ?    1.5   0.0      0.37   3.7e+02      13      58 ..     494     539 ..     493     543 .. 0.82

  Alignments for each domain:
  == domain 1  score: 4.6 bits;  conditional E-value: 0.038
      DUF948  24 lkktldeaaatieelekqvdpilkevedllakvnelledvneklekvdplteavadlgesv 84 
                 +++t++++++++e++e+q+ ++ k++ ++ + ++                          v
  KOO20872.1  92 ATDTIRKMKHRVEDMESQMIELEKNMGTISSASES-------------------------V 127
                 45555555555555555555555555544444433.........................2 PP

  == domain 2  score: 3.4 bits;  conditional E-value: 0.092
      DUF948  21 llklkktldeaaatieele.kqvdpilkevedllakvnelled 62 
                 l+  +k++++a+++ e+l  + +d++l++++d l+   + +++
  KOO20872.1 401 LVPQAKIMQRATRAAETLAkRAMDSLLQQLQDKLSAQVKDMQG 443
                 4555789999999999987356889999998877655542332 PP

  == domain 3  score: 1.5 bits;  conditional E-value: 0.37
      DUF948  13 Lviflivvllklkktldeaaatieelekqvdpilkevedllakvne 58 
                 Lv  l  +ll l+kt++e +at +++  +++  l+ v++ +a+v +
  KOO20872.1 494 LVGRLYAALLGLAKTARESRATADSVLVRAGLCLHMVATGVAQVPA 539
                 677788999***************9988888888888777777665 PP

>> ZapB  Cell division protein ZapB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   0.0       1.9   1.9e+03       3      35 ..      54      86 ..      52      89 .. 0.82
   2 ?    9.0   0.3    0.0019       1.9      12      64 ..      88     140 ..      87     152 .. 0.78
   3 ?   -1.2   0.0       2.9   2.9e+03      46      71 .]     372     397 ..     349     397 .. 0.70
   4 ?   -0.9   0.2       2.3   2.3e+03       5      17 ..     426     438 ..     409     460 .. 0.71

  Alignments for each domain:
  == domain 1  score: -0.6 bits;  conditional E-value: 1.9
        ZapB  3 lelLeqLEskiqkaidtitlLqmeieeLkeene 35
                +  Le+L  + ++++ +i++L   ++ L  en+
  KOO20872.1 54 YKSLEELVHRGNAMVSEIKSLDSDMQMLVYENY 86
                668999999999999999999888888877775 PP

  == domain 2  score: 9.0 bits;  conditional E-value: 0.0019
        ZapB  12 kiqkaidtitlLqmeieeLkeeneelkeenreleeeneqlkeereawqerlkk 64 
                 k  +a dti++++ ++e+++ +  el++++  +++  e      +a +  l+k
  KOO20872.1  88 KFISATDTIRKMKHRVEDMESQMIELEKNMGTISSASESVDSSLSARRGQLEK 140
                 566899**********************9999886666655555555555444 PP

  == domain 3  score: -1.2 bits;  conditional E-value: 2.9
        ZapB  46 eeneqlkeereawqerlkkLLgklee 71 
                 + +++   +++++ + ++kL+g l+e
  KOO20872.1 372 RRLQEDNVDPSSLLQGVRKLVGALDE 397
                 56666667888888999999998886 PP

  == domain 4  score: -0.9 bits;  conditional E-value: 2.3
        ZapB   5 lLeqLEskiqkai 17 
                 lL+qL+ k ++ +
  KOO20872.1 426 LLQQLQDKLSAQV 438
                 4556666655544 PP

>> GAS  Growth-arrest specific micro-tubule binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.9   3.4e-05     0.034      26      94 ..      94     161 ..      83     173 .. 0.87
   2 ?    0.4   0.9      0.36   3.5e+02      98     174 ..     371     447 ..     357     467 .. 0.58
   3 ?   -3.2   0.3       4.3   4.3e+03     103     129 ..     565     591 ..     561     598 .. 0.53

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 3.4e-05
         GAS  26 elIkslKeeieelkkkeernekelseisqenkrlkepLkkaeeeveeLrkqlknyekdkqslknlkarl 94 
                 ++I+++K  +e+++ +  + ek++  is+  ++    L + + ++e+L+ + kn  k  q l+ l arl
  KOO20872.1  94 DTIRKMKHRVEDMESQMIELEKNMGTISSASESVDSSLSARRGQLEKLNGAKKNLTKL-QFLMDLPARL 161
                 78***********************************************999998874.4455555555 PP

  == domain 2  score: 0.4 bits;  conditional E-value: 0.36
         GAS  98 ekelkdlkwehevleqrfekvekerdelykkfeaaiqevqqktglknllLekklkalqeelEkk.eaqleevlaaanl 174
                  + l++  ++  +l q + k+  + de+++   +  + +q  t   ++l ++ +++l ++l+ k  aq++++  a+n 
  KOO20872.1 371 RRRLQEDNVDPSSLLQGVRKLVGALDEVHALVPQ-AKIMQRATRAAETLAKRAMDSLLQQLQDKlSAQVKDMQGATNS 447
                 5555555666666666666666666666665554.4455555666666666666665555544313555555544443 PP

  == domain 3  score: -3.2 bits;  conditional E-value: 4.3
         GAS 103 dlkwehevleqrfekvekerdelykkf 129
                 +++ +++ l +rf ++++++  l+ ++
  KOO20872.1 565 EMQASADALLERFVEMQAQKLSLEVTQ 591
                 445555555555555555555554444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (788 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1332  (0.074293); expected 358.6 (0.02)
Passed bias filter:                      749  (0.0417759); expected 358.6 (0.02)
Passed Vit filter:                        89  (0.00496402); expected 17.9 (0.001)
Passed Fwd filter:                        25  (0.00139439); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              18  [number of targets reported over threshold]
# CPU time: 0.86u 0.29s 00:00:01.14 Elapsed: 00:00:00.50
# Mc/sec: 4716.70
//
Query:       KOO20873.1  [L=1010]
Description: hypothetical protein Ctob_003939 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.35   11.1   7.1        0.5   10.6   1.7    3.3  2  COG5      Golgi transport complex subunit 5


Domain annotation for each model (and alignments):
>> COG5  Golgi transport complex subunit 5
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.5   0.2     0.017   3.1e+02      32      83 ..     136     186 ..      79     197 .. 0.79
   2 ?   10.6   1.7   2.8e-05       0.5      51     122 ..     414     485 ..     383     490 .. 0.84

  Alignments for each domain:
  == domain 1  score: 1.5 bits;  conditional E-value: 0.017
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
        COG5  32 stplkrlnydiqeldkrlrqlitsnhleLlehlskskslssvlselkssles 83 
                 + ++ rl++ ++ l++r+r     ++  Ll++l + ++  +   el+++le+
  KOO20873.1 136 KGEVTRLEQEVSALQERVRMGSE-KERALLAKLHEVENGPGCARELREQLEA 186
                 55678888888888888887654.5567888888888888888888888876 PP

  == domain 2  score: 10.6 bits;  conditional E-value: 2.8e-05
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-TTHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
        COG5  51 qlitsnhleLlehlskskslssvlselksslesLsasyerlkskvlepyeeaeklqsalkrlhqtldLlrra 122
                 + ++++ +eL  +++k+ +    ++ lk+++ + +++ +rl+ ++l++  +a  l++     h  +dLl r 
  KOO20873.1 414 ERVQRHNEELQREAKKHVTDMHAVERLKGEIGAFQEANDRLEGELLKRDRHAAALKEHVRAAHARTDLLQRQ 485
                 4567788899999999999999**********************************************9875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1010 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2084  (0.116236); expected 358.6 (0.02)
Passed bias filter:                      551  (0.0307323); expected 358.6 (0.02)
Passed Vit filter:                        53  (0.0029561); expected 17.9 (0.001)
Passed Fwd filter:                        15  (0.000836633); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 1.08u 0.31s 00:00:01.39 Elapsed: 00:00:00.58
# Mc/sec: 5281.97
//
Query:       KOO20874.1  [L=111]
Description: transcription factor gte6, partial [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    7.2e-22   77.3   0.0    8.7e-22   77.0   0.0    1.1  1  Bromodomain  Bromodomain


Domain annotation for each model (and alignments):
>> Bromodomain  Bromodomain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   77.0   0.0   4.9e-26   8.7e-22       5      82 ..       2      79 ..       1      81 [. 0.96

  Alignments for each domain:
  == domain 1  score: 77.0 bits;  conditional E-value: 4.9e-26
                 HHHBHTTTCGGGGCSTT-GCCSTTHHHH.SS---HHHHHHHHHTT--SSHHHHHHHHHHHHHHHHHHSHTTSHHHHHH CS
  Bromodomain  5 lsellehklaepFlepvdpeefpdyyavikkPldLstIkkklesnkYksladfeadlkllfsNarkyngegsviyela 82
                 ls + +hk a+pF +pv+++e pdy ++i+ P+d++t+k+++e ++   l+++++dl+l+f+Na+kyngeg+++y++a
   KOO20874.1  2 LSSIARHKWAYPFKRPVTEKEAPDYREIIETPMDFATLKRRVETGQVADLHALCDDLNLIFENAMKYNGEGTDYYKMA 79
                 677889**********************************************************************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (111 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       381  (0.0212505); expected 358.6 (0.02)
Passed bias filter:                      344  (0.0191868); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.26s 00:00:00.66 Elapsed: 00:00:00.44
# Mc/sec: 755.22
//
Query:       KOO20875.1  [L=731]
Description: glycosyltransferase family 77 protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.5e-31  108.5   0.0    8.9e-31  107.5   0.0    1.5  1  Nucleotid_trans  Nucleotide-diphospho-sugar transferase
    5.9e-30  104.7   5.8      1e-29  103.9   5.8    1.3  1  Bax1-I           Inhibitor of apoptosis-promoting Bax1
     0.0023   17.5   0.0     0.0041   16.7   0.0    1.4  1  Peptidase_S41    Peptidase family S41
  ------ inclusion threshold ------
       0.08   12.6   0.3       0.12   12.0   0.3    1.2  1  O-FucT           GDP-fucose protein O-fucosyltransferase
       0.16   11.7   0.1       0.78    9.4   0.0    1.9  2  Glyco_transf_34  galactosyl transferase GMA12/MNN10 family
       0.18   11.7   0.1        0.7    9.8   0.0    2.0  2  PDZ_6            PDZ domain


Domain annotation for each model (and alignments):
>> Nucleotid_trans  Nucleotide-diphospho-sugar transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  107.5   0.0     3e-34   8.9e-31       6     211 ..      20     323 ..      16     324 .. 0.91

  Alignments for each domain:
  == domain 1  score: 107.5 bits;  conditional E-value: 3e-34
  Nucleotid_trans   6 llvvAlDeealerckelgvpvlyltsk..........gkdsakkdeefksktykkmswrkvrlllellklGynvllsDvDvvWlrnpfpll... 86 
                      +lv+AlD+++  +c e+g+p   ++++          g   a++ ++++  t+ +m+  k+ ++++ l +G + ++sDvDv Wl++p pl+   
       KOO20875.1  20 YLVGALDAKMAALCDEQGIPAATIADDvllklgadslGSRAATTYYRYAPGTFLRMGLIKQIFIRQMLVTGLDAMVSDVDVAWLQSPWPLVryg 113
                      9*******************9999999*****999988888888899999*****************************************666 PP

  Nucleotid_trans  87 .....ky.......edaDvlvssDsldgttadelknli.....NsGfffvrateatkallkkwaeelase.sglw....Dqdvfnlllregaak 158
                           ++         aDv++s+D+ ++ ++ + +++      N+G+ f+r++++++a l++w+e++a+   +      Dq  +n++lr  + +
       KOO20875.1 114 datkpTVrpscgllAFADVVLSVDQVQQYMDSDKHQWHvhselNTGVTFFRNSPGALAVLDEWKEAMAKAiAA-GnpnhDQYWLNEVLRPRTFH 206
                      6655511666777899*************999999999******************************99444.34888**********99998 PP

  Nucleotid_trans 159 e..............................................................sglkvrvLdtalfvngkgyfvqvrdeeevkt 190
                      +                                                                ++++ ++ a+++ng+++fvq  + + +  
       KOO20875.1 207 NlkfeaasrsawlpdaaanilatstskggrapvgmptradafdssdpnlralflfqrrfgstnASVTIGTFPIAEVSNGHTFFVQ--KLHNIVG 298
                      89***********************************************************************************..7777777 PP

  Nucleotid_trans 191 kkkpvavhanycsgke.....dKlkr 211
                       + pv vh++y++g+      +K++r
       KOO20875.1 299 -VPPVCVHTTYQYGDGttyayGKRER 323
                      .89**********7664566666666 PP

>> Bax1-I  Inhibitor of apoptosis-promoting Bax1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  103.9   5.8   3.4e-33     1e-29      47     207 .]     561     725 ..     543     725 .. 0.85

  Alignments for each domain:
  == domain 1  score: 103.9 bits;  conditional E-value: 3.4e-33
      Bax1-I  47 aplalvflslsaarlkkkssalalallllftlleGlslspillvyt...gaiilqaflltaaifgglslyaltt.krdlsglggflfagligliiaslv 141
                 +pl+ ++   ++ +++++s al  +l+ +ft+l+G+ l+p+ll++    +ai+ qa+++t+a+fg+++++ l++ +  + ++g  l  g+++l+ a+++
  KOO20875.1 561 VPLVGLM---YT-SKHTHSFALRAGLYAAFTGLSGVALAPLLLLALkvsPAIVPQALIITTALFGSMTALSLLApRGAMLRWGVPLGGGVLVLMGAGIA 655
                 4444444...33.4555677777***************************************************555777******************* PP

      Bax1-I 142 nlFlp.....ssalelaisylgvllfsglilyDtqkiierageygeedailaalsLyldfinlFlslLril 207
                 ++F+p      ++l+ +  y+g+ lf+++++yDtqk+i ++ e+ge+d +++a++L++df  +F+++L +l
  KOO20875.1 656 SMFVPvtsawYPLLHGVHMYGGLTLFTLYVAYDTQKMIDEY-EMGEDDHLKHAVDLFIDFKQIFTRILILL 725
                 ****997555555555555*******************865.668888*******************9875 PP

>> Peptidase_S41  Peptidase family S41
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.0   1.4e-06    0.0041     107     165 ..     467     529 ..     466     530 .. 0.76

  Alignments for each domain:
  == domain 1  score: 16.7 bits;  conditional E-value: 1.4e-06
                    HHHHHTTSEEEEES--SB-EEEEEEEE-TTSSEEEEEEEEEE..ETTSBC.TTTT.S---SEE CS
  Peptidase_S41 107 galkdngratlvGertfGkgtvqsvvelndgsalkltiakyl..tpdgrs.iekk.GvePdie 165
                    +a++  g a++vG+ t+Gkg+ q vv  +dg a+++t+ ++   ++ gr+ ++   GveP i+
     KOO20875.1 467 AAIRTSGGALVVGQCTYGKGSSQAVVYQSDGHAVSFTAYTLAvgRRRGRQmLDLSkGVEPQIK 529
                    5899999***************************97765543114555553443358888886 PP

>> O-FucT  GDP-fucose protein O-fucosyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.3   4.1e-05      0.12      13      43 ..     382     414 ..     380     419 .. 0.85

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 4.1e-05
      O-FucT  13 nqrdvilrmvavarllnaTLVlPpw.dql.shw 43 
                 +qr+ ++++ ++a++l++TLV Pp+ + l  +w
  KOO20875.1 382 LQRQWLMDAFVLAKALERTLVFPPLwCMLdRFW 414
                 79**********************765554555 PP

>> Glyco_transf_34  galactosyl transferase GMA12/MNN10 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   0.0   0.00026      0.78     142     186 ..     153     196 ..     135     204 .. 0.81
   2 ?   -0.7   0.0      0.32   9.7e+02     200     230 ..     685     715 ..     667     717 .. 0.86

  Alignments for each domain:
  == domain 1  score: 9.4 bits;  conditional E-value: 0.00026
  Glyco_transf_34 142 wnglnagsflirnsewsklllDlwadpllrekkkavtesdeqsal 186
                      +  ln+g+ ++rns  +++ lD w + +++  +    ++++q  l
       KOO20875.1 153 HSELNTGVTFFRNSPGALAVLDEWKEAMAKAIAAG-NPNHDQYWL 196
                      578**********************9998887777.556666555 PP

  == domain 2  score: -0.7 bits;  conditional E-value: 0.32
  Glyco_transf_34 200 vglveqkvinsydegekelgykegdlvvhfa 230
                      v++ +qk+i++y+ ge +  ++  dl + f+
       KOO20875.1 685 VAYDTQKMIDEYEMGEDDHLKHAVDLFIDFK 715
                      455569*************9******99996 PP

>> PDZ_6  PDZ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.0       1.3   3.9e+03      20      39 ..     131     140 ..     124     148 .. 0.60
   2 ?    9.8   0.0   0.00023       0.7      17      56 .]     425     465 ..     421     465 .. 0.95

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 1.3
       PDZ_6  20 DiilsvNGqpveglsladva 39 
                 D++lsv+          +v+
  KOO20875.1 131 DVVLSVD----------QVQ 140
                 5555555..........444 PP

  == domain 2  score: 9.8 bits;  conditional E-value: 0.00023
       PDZ_6  17 rvGDiilsvNGqpveglsladvaallr.gsagesvvlvvrr 56 
                 ++ D +l+v G p+ g s +++ +++  g++ge+v +++r+
  KOO20875.1 425 QADDEVLEVCGLPLAGASREEALEIVDmGPEGEEVLITLRK 465
                 899***********************************985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (731 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       391  (0.0218082); expected 358.6 (0.02)
Passed bias filter:                      295  (0.0164538); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.60u 0.23s 00:00:00.83 Elapsed: 00:00:00.42
# Mc/sec: 5286.52
//
Query:       KOO20876.1  [L=453]
Description: hypothetical protein Ctob_003936 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.1e-24   83.4  25.6    5.8e-05   22.8   0.2    9.4 10  LRR_6     Leucine Rich repeat
    2.4e-15   56.9   3.4    1.2e-06   29.1   0.0    3.9  5  Ank_2     Ankyrin repeats (3 copies)
    9.1e-15   54.5   3.0      2e-09   37.5   0.1    4.0  4  Ank_5     Ankyrin repeats (many copies)
    3.2e-14   53.1   1.1    2.4e-05   24.8   0.0    3.7  4  Ank_4     Ankyrin repeats (many copies)
    1.5e-11   44.2   1.3    2.6e-05   24.5   0.1    4.6  4  Ank       Ankyrin repeat
    4.6e-11   41.9   0.1      0.014   15.9   0.0    4.3  4  Ank_3     Ankyrin repeat
    2.7e-07   30.2   3.0         17    6.4   0.1    7.1  7  LRR_1     Leucine Rich Repeat
    1.4e-05   25.3  19.8       0.81   10.2   1.3    6.2  6  LRR_4     Leucine Rich repeats (2 copies)
  ------ inclusion threshold ------
      0.097   12.4  21.4        9.1    6.1   1.6    6.8  5  LRR_8     Leucine rich repeat


Domain annotation for each model (and alignments):
>> LRR_6  Leucine Rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.0         5     1e+04      16      23 ..      67      74 ..      67      74 .. 0.88
   2 !   19.1   0.1   4.4e-07   0.00088       5      23 ..     195     213 ..     194     214 .. 0.96
   3 ?    0.5   0.0      0.43   8.6e+02       5      24 .]     213     232 ..     212     232 .. 0.89
   4 !    7.4   0.0    0.0026       5.1       1      12 [.     237     248 ..     237     248 .. 0.92
   5 !   15.7   0.2   5.5e-06     0.011       5      24 .]     275     294 ..     272     294 .. 0.95
   6 ?    1.0   0.0       0.3   5.9e+02       3      24 .]     303     324 ..     302     324 .. 0.86
   7 !    9.4   0.2    0.0006       1.2       5      16 ..     333     344 ..     332     354 .. 0.78
   8 !   22.8   0.2   2.9e-08   5.8e-05       5      24 .]     363     382 ..     360     382 .. 0.95
   9 !   10.4   0.0   0.00028      0.56       3      23 ..     391     411 ..     389     412 .. 0.88
  10 !    8.0   0.6    0.0016       3.2       5      19 ..     421     435 ..     420     435 .. 0.94

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 5
       LRR_6 16 gDeGaeaL 23
                +D G++aL
  KOO20876.1 67 DDRGVSAL 74
                699***98 PP

  == domain 2  score: 19.1 bits;  conditional E-value: 4.4e-07
       LRR_6   5 LteLdLsgNdIgDeGaeaL 23 
                 Lt+L+Ls+N + DeG+ aL
  KOO20876.1 195 LTALNLSDNRLKDEGVRAL 213
                 9***************998 PP

  == domain 3  score: 0.5 bits;  conditional E-value: 0.43
       LRR_6   5 LteLdLsgNdIgDeGaeaLa 24 
                 Lt+L+L+ N +  eG +a++
  KOO20876.1 213 LTKLSLAQNILKEEGTKAIC 232
                 89*******99999988887 PP

  == domain 4  score: 7.4 bits;  conditional E-value: 0.0026
       LRR_6   1 snthLteLdLsg 12 
                 +nt+L+eLd+sg
  KOO20876.1 237 QNTTLKELDISG 248
                 69********96 PP

  == domain 5  score: 15.7 bits;  conditional E-value: 5.5e-06
       LRR_6   5 LteLdLsgNdIgDeGaeaLa 24 
                 Lt+L+Ls N++ De ++a +
  KOO20876.1 275 LTALNLSRNHLKDESVSAVC 294
                 9****************987 PP

  == domain 6  score: 1.0 bits;  conditional E-value: 0.3
       LRR_6   3 thLteLdLsgNdIgDeGaeaLa 24 
                 t+L +L++s  ++g +Ga++ a
  KOO20876.1 303 TKLASLNMSEICMGPVGAKSVA 324
                 57889999999999***99876 PP

  == domain 7  score: 9.4 bits;  conditional E-value: 0.0006
       LRR_6   5 LteLdLsgNdIg 16 
                 Lt+L+Ls+N++ 
  KOO20876.1 333 LTSLNLSDNQLC 344
                 9*********75 PP

  == domain 8  score: 22.8 bits;  conditional E-value: 2.9e-08
       LRR_6   5 LteLdLsgNdIgDeGaeaLa 24 
                 Lt+LdLs+Nd+ DeG++a +
  KOO20876.1 363 LTALDLSFNDLKDEGVSAVC 382
                 9****************987 PP

  == domain 9  score: 10.4 bits;  conditional E-value: 0.00028
       LRR_6   3 thLteLdLsgNdIgDeGaeaL 23 
                 t+L +L+   NdIg +Ga a 
  KOO20876.1 391 TKLASLNFGNNDIGPVGANAV 411
                 6899*************9765 PP

  == domain 10  score: 8.0 bits;  conditional E-value: 0.0016
       LRR_6   5 LteLdLsgNdIgDeG 19 
                 L +L+Ls N+Ig+eG
  KOO20876.1 421 LMTLNLSINNIGGEG 435
                 779***********9 PP

>> Ank_2  Ankyrin repeats (3 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.1   0.0   5.8e-10   1.2e-06      32      83 .]       9      67 ..       4      67 .. 0.87
   2 !   25.8   0.0     6e-09   1.2e-05      25      80 ..      69     132 ..      65     135 .. 0.86
   3 ?   -1.5   0.0       1.9   3.8e+03      26      64 ..     194     238 ..     180     247 .. 0.57
   4 ?   -3.0   0.0       5.8   1.2e+04      26      35 ..     274     283 ..     261     306 .. 0.50
   5 ?   -1.2   0.0       1.6   3.3e+03      26      64 ..     349     388 ..     326     396 .. 0.52

  Alignments for each domain:
  == domain 1  score: 29.1 bits;  conditional E-value: 5.8e-10
       Ank_2 32 yAakngnleivklLleh.......adndgrtpLhyAarsghleivklLlekgadinlkd 83
                 Aa+ g+++ +++Ll++       +++  +t+L+ Aa  gh  +v +Lle+gad++ +d
  KOO20876.1  9 QAAQFGQVDELRALLDEspelidqVNDRDMTALMSAAHGGHAAVVTMLLERGADVTCRD 67
                69999*9999*****977778666778899*******88****************9987 PP

  == domain 2  score: 25.8 bits;  conditional E-value: 6e-09
       Ank_2  25 ngktaLhyAakngnleivklLle...h..ad...ndgrtpLhyAarsghleivklLlekgadin 80 
                  g +aL yA++++ le+v ++l+   h  ++     g+t+L +A+++g++ i++ Ll++ga+++
  KOO20876.1  69 RGVSALEYAIREDRLEVVLAILDragHdvVNavgPRGTTALLVACEHGREAIARALLDRGAKVD 132
                 5789******************95543885556699**********************9*9987 PP

  == domain 3  score: -1.5 bits;  conditional E-value: 1.9
       Ank_2  26 gktaLhyAakngnleivklLleh......adndgrtpLhyAarsg 64 
                 g+taL ++  + + e v++L +       ++++g+ ++  A +++
  KOO20876.1 194 GLTALNLSDNRLKDEGVRALTKLslaqniLKEEGTKAICEALEQN 238
                 555555554444445566666533432343366777777776554 PP

  == domain 4  score: -3.0 bits;  conditional E-value: 5.8
       Ank_2  26 gktaLhyAak 35 
                 g+taL ++  
  KOO20876.1 274 GLTALNLSRN 283
                 3444444433 PP

  == domain 5  score: -1.2 bits;  conditional E-value: 1.6
       Ank_2  26 gktaLhyAak.ngnleivklLlehadndgrtpLhyAarsg 64 
                 g ta+  A + ng l ++ l  + ++++g ++   A++s+
  KOO20876.1 349 GITAIADALRvNGGLTALDLSFNDLKDEGVSAVCEAIQSN 388
                 4555554444333222233333224456666666666554 PP

>> Ank_5  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.5   0.1     1e-12     2e-09       1      56 []      22      77 ..      22      77 .. 0.95
   2 !   18.3   0.0   1.1e-06    0.0022       1      36 [.      56      90 ..      56      94 .. 0.94
   3 !   13.4   0.1   3.7e-05     0.075       5      40 ..      94     129 ..      89     136 .. 0.87
   4 ?   -1.3   0.0       1.5     3e+03      46      55 ..     359     368 ..     354     369 .. 0.76

  Alignments for each domain:
  == domain 1  score: 37.5 bits;  conditional E-value: 1e-12
       Ank_5  1 LlehgpadvnrldgggntpLhvAakygaadvvrlLlargadlnltdsrGltaldlA 56
                Ll++ p+ ++  + + +t+L+ Aa++g+a vv +Ll+rgad +++d+rG +al++A
  KOO20876.1 22 LLDESPELIDQVNDRDMTALMSAAHGGHAAVVTMLLERGADVTCRDDRGVSALEYA 77
                7787899999999999***************************************9 PP

  == domain 2  score: 18.3 bits;  conditional E-value: 1.1e-06
       Ank_5  1 LlehgpadvnrldgggntpLhvAakygaadvvrlLl 36
                Lle+g adv ++d +g+++L +A++  +++vv+ +l
  KOO20876.1 56 LLERG-ADVTCRDDRGVSALEYAIREDRLEVVLAIL 90
                89***.***************************999 PP

  == domain 3  score: 13.4 bits;  conditional E-value: 3.7e-05
       Ank_5   5 gpadvnrldgggntpLhvAakygaadvvrlLlarga 40 
                 g+  vn+  ++g+t+L vA+++g+  ++r Ll+rga
  KOO20876.1  94 GHDVVNAVGPRGTTALLVACEHGREAIARALLDRGA 129
                 4778999*************************8876 PP

  == domain 4  score: -1.3 bits;  conditional E-value: 1.5
       Ank_5  46 dsrGltaldl 55 
                  + Gltaldl
  KOO20876.1 359 VNGGLTALDL 368
                 5667****97 PP

>> Ank_4  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.8   0.0   1.2e-08   2.4e-05       7      55 .]       9      57 ..       5      57 .. 0.88
   2 !   11.7   0.0   0.00016      0.31      16      51 ..      52      86 ..      51      90 .. 0.88
   3 !   21.9   0.0   9.4e-08   0.00019       3      55 .]      72     125 ..      70     125 .. 0.94
   4 !   13.5   0.0   4.1e-05     0.081       2      30 ..     106     134 ..     105     145 .. 0.88

  Alignments for each domain:
  == domain 1  score: 24.8 bits;  conditional E-value: 1.2e-08
       Ank_4  7 yaaisgrlelvrlLlekgad.inaqdnrsGetalhiAakrgnveilklLl 55
                +aa++g+++ +r Ll+  ++ i+ + n++++tal  Aa +g+  ++ +Ll
  KOO20876.1  9 QAAQFGQVDELRALLDESPElIDQV-NDRDMTALMSAAHGGHAAVVTMLL 57
                4666***********9999956666.**********************98 PP

  == domain 2  score: 11.7 bits;  conditional E-value: 0.00016
       Ank_4 16 lvrlLlekgadinaqdnrsGetalhiAakrgnveil 51
                +v  Lle+gad+ ++ +++G +al +A++  ++e++
  KOO20876.1 52 VVTMLLERGADVTCR-DDRGVSALEYAIREDRLEVV 86
                5789***********.999*********99888887 PP

  == domain 3  score: 21.9 bits;  conditional E-value: 9.4e-08
       Ank_4   3 taLhyaaisgrlelvrlLlek.gad.inaqdnrsGetalhiAakrgnveilklLl 55 
                 +aL ya+ + rle+v  +l++ g d +na+ +r G tal  A+ +g+  i++ Ll
  KOO20876.1  72 SALEYAIREDRLEVVLAILDRaGHDvVNAVGPR-GTTALLVACEHGREAIARALL 125
                 799*****************99********777.******************997 PP

  == domain 4  score: 13.5 bits;  conditional E-value: 4.1e-05
       Ank_4   2 ltaLhyaaisgrlelvrlLlekgadinaq 30 
                 +taL  a+++gr+ ++r Ll++ga ++a 
  KOO20876.1 106 TTALLVACEHGREAIARALLDRGAKVDAL 134
                 799********************999987 PP

>> Ank  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.5   0.1   1.3e-08   2.6e-05       3      32 .]      38      68 ..      36      68 .. 0.94
   2 ?    3.1   0.0     0.072   1.4e+02       2      30 ..      70     101 ..      69     102 .. 0.81
   3 !   11.8   0.0   0.00013      0.26       2      30 ..     105     134 ..     104     136 .. 0.89
   4 ?   -2.4   0.0       4.1   8.1e+03       2       6 ..     274     278 ..     254     289 .. 0.59

  Alignments for each domain:
  == domain 1  score: 24.5 bits;  conditional E-value: 1.3e-08
                BBHHHHHHHHTTHHHHHHHH.TTTSTTCBTT CS
         Ank  3 nTPLHlAatngkkriiklLL.hGAnlnaldn 32
                +T+L+ Aa++g++ ++ +LL +GA+++ +d+
  KOO20876.1 38 MTALMSAAHGGHAAVVTMLLeRGADVTCRDD 68
                8*******************99****99985 PP

  == domain 2  score: 3.1 bits;  conditional E-value: 0.072
                 SBBHHHHHHHHTTHHHHHHHH.T.TTST.TCB CS
         Ank   2 GnTPLHlAatngkkriiklLL.h.GAnl.nal 30 
                 G ++L +A++++ ++++ ++L + G ++ na+
  KOO20876.1  70 GVSALEYAIREDRLEVVLAILdRaGHDVvNAV 101
                 8999******9*999*9999963477865875 PP

  == domain 3  score: 11.8 bits;  conditional E-value: 0.00013
                 SBBHHHHHHHHTTHHHHHHHH.TTTSTTCB CS
         Ank   2 GnTPLHlAatngkkriiklLL.hGAnlnal 30 
                 G T+L +A+  g + i+++LL +GA ++al
  KOO20876.1 105 GTTALLVACEHGREAIARALLdRGAKVDAL 134
                 89*******888899******779*99986 PP

  == domain 4  score: -2.4 bits;  conditional E-value: 4.1
                 SBBHH CS
         Ank   2 GnTPL 6  
                 G T+L
  KOO20876.1 274 GLTAL 278
                 33333 PP

>> Ank_3  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.0       2.2   4.4e+03       8      23 ..       9      24 ..       5      29 .. 0.82
   2 !   14.4   0.0   2.2e-05     0.043       3      30 ..      38      64 ..      36      65 .. 0.93
   3 !    6.2   0.0    0.0095        19       2      27 ..      70      95 ..      69      98 .. 0.86
   4 !   15.9   0.0   6.8e-06     0.014       4      30 ..     107     132 ..     104     133 .. 0.93

  Alignments for each domain:
  == domain 1  score: -1.0 bits;  conditional E-value: 2.2
       Ank_3  8 lAarsgnleivkfLle 23
                +Aa +g ++ +++Ll+
  KOO20876.1  9 QAAQFGQVDELRALLD 24
                79999999889***98 PP

  == domain 2  score: 14.4 bits;  conditional E-value: 2.2e-05
       Ank_3  3 etpLhlAarsgnleivkfLlenkgadvn 30
                +t+L+ Aa+ g+ ++v +Lle +gadv 
  KOO20876.1 38 MTALMSAAHGGHAAVVTMLLE-RGADVT 64
                79*******************.9***95 PP

  == domain 3  score: 6.2 bits;  conditional E-value: 0.0095
       Ank_3  2 GetpLhlAarsgnleivkfLlenkga 27
                G ++L +A+r ++le+v ++l+  g 
  KOO20876.1 70 GVSALEYAIREDRLEVVLAILDRAGH 95
                779******************96555 PP

  == domain 4  score: 15.9 bits;  conditional E-value: 6.8e-06
       Ank_3   4 tpLhlAarsgnleivkfLlenkgadvn 30 
                 t+L +A+++g+ +i+++Ll+ +ga v+
  KOO20876.1 107 TALLVACEHGREAIARALLD-RGAKVD 132
                 9*******************.9**998 PP

>> LRR_1  Leucine Rich Repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.5   0.1     0.017        34       2      22 ..     195     215 ..     194     232 .. 0.88
   2 ?    1.7   0.0      0.31   6.1e+02       2      10 ..     241     249 ..     240     258 .. 0.83
   3 ?    4.4   0.0     0.041        82       2      16 ..     275     289 ..     274     300 .. 0.79
   4 !    6.4   0.1    0.0088        17       2      15 ..     333     346 ..     332     352 .. 0.82
   5 ?    3.5   0.0      0.08   1.6e+02       2      16 ..     363     377 ..     362     388 .. 0.78
   6 ?    0.3   0.0      0.88   1.7e+03       1      13 [.     392     404 ..     392     414 .. 0.77
   7 ?   -1.3   0.0       3.1   6.1e+03       2      15 ..     421     434 ..     420     440 .. 0.72

  Alignments for each domain:
  == domain 1  score: 5.5 bits;  conditional E-value: 0.017
       LRR_1   2 LrhLdLsnnpllglppnsfqn 22 
                 L+ L+Ls+n+l + + +++ +
  KOO20876.1 195 LTALNLSDNRLKDEGVRALTK 215
                 889********8888887765 PP

  == domain 2  score: 1.7 bits;  conditional E-value: 0.31
       LRR_1   2 LrhLdLsnn 10 
                 L++Ld+s+ 
  KOO20876.1 241 LKELDISGD 249
                 9*****985 PP

  == domain 3  score: 4.4 bits;  conditional E-value: 0.041
       LRR_1   2 LrhLdLsnnpllglp 16 
                 L+ L+Ls+n+l + +
  KOO20876.1 275 LTALNLSRNHLKDES 289
                 889*******96554 PP

  == domain 4  score: 6.4 bits;  conditional E-value: 0.0088
       LRR_1   2 LrhLdLsnnpllgl 15 
                 L++L+Ls+n+l gl
  KOO20876.1 333 LTSLNLSDNQLCGL 346
                 89********9543 PP

  == domain 5  score: 3.5 bits;  conditional E-value: 0.08
       LRR_1   2 LrhLdLsnnpllglp 16 
                 L+ LdLs n l + +
  KOO20876.1 363 LTALDLSFNDLKDEG 377
                 889*******95554 PP

  == domain 6  score: 0.3 bits;  conditional E-value: 0.88
       LRR_1   1 nLrhLdLsnnpll 13 
                 +L +L+ +nn ++
  KOO20876.1 392 KLASLNFGNNDIG 404
                 6779******985 PP

  == domain 7  score: -1.3 bits;  conditional E-value: 3.1
       LRR_1   2 LrhLdLsnnpllgl 15 
                 L +L+Ls n+++g 
  KOO20876.1 421 LMTLNLSINNIGGE 434
                 56899998887665 PP

>> LRR_4  Leucine Rich repeats (2 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.2   1.3   0.00041      0.81       3      33 ..     195     221 ..     194     223 .. 0.78
   2 !    9.8   0.0   0.00054       1.1       3      33 ..     213     249 ..     211     252 .. 0.87
   3 !    6.6   0.1    0.0054        11       3      18 ..     275     290 ..     274     313 .. 0.73
   4 !    7.1   2.5    0.0038       7.5       3      39 ..     333     373 ..     332     375 .. 0.80
   5 !    6.3   0.2     0.007        14       3      36 ..     363     403 ..     361     409 .. 0.67
   6 ?   -0.6   0.1         1     2e+03       4      13 ..     422     431 ..     420     435 .. 0.69

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.00041
                 --EEE--SS---E-S-HHH-TT--EEE-.-S CS
       LRR_4   3 LevLdLsnNqltdiplleklpnLkeLdLsgN 33 
                 L+ L+Ls+N+l+d +       L++L+L +N
  KOO20876.1 195 LTALNLSDNRLKDEGV----RALTKLSLAQN 221
                 999*********9555....77777777666 PP

  == domain 2  score: 9.8 bits;  conditional E-value: 0.00054
                 --EEE--SS---E-S-......HHH-TT--EEE-.-S CS
       LRR_4   3 LevLdLsnNqltdipl......leklpnLkeLdLsgN 33 
                 L++L+L++N l++ +       le+++ LkeLd+sg 
  KOO20876.1 213 LTKLSLAQNILKEEGTkaiceaLEQNTTLKELDISGD 249
                 9*******9**99888998777679999******985 PP

  == domain 3  score: 6.6 bits;  conditional E-value: 0.0054
                 --EEE--SS---E-S- CS
       LRR_4   3 LevLdLsnNqltdipl 18 
                 L+ L+Ls N+l+d + 
  KOO20876.1 275 LTALNLSRNHLKDESV 290
                 999*********9776 PP

  == domain 4  score: 7.1 bits;  conditional E-value: 0.0038
                 --EEE--SS-.......--E-S-.HHH-TT--EEE-.-S-----G CS
       LRR_4   3 LevLdLsnNq.......ltdipl.leklpnLkeLdLsgNnlitdl 39 
                 L++L+Ls+Nq       +t i   l+ +  L+ LdLs+N    dl
  KOO20876.1 333 LTSLNLSDNQlcgldqgITAIADaLRVNGGLTALDLSFN----DL 373
                 99*******988888888866666775677999999999....66 PP

  == domain 5  score: 6.3 bits;  conditional E-value: 0.007
                 --EEE--SS---E-S-...HH...H-TT..--EEE-.-S--- CS
       LRR_4   3 LevLdLsnNqltdipl...le...klpn..LkeLdLsgNnli 36 
                 L+ LdLs N l+d +    +e   +++   L +L+  gNn i
  KOO20876.1 363 LTALDLSFNDLKDEGVsavCEaiqSNKEtkLASLNF-GNNDI 403
                 999****99***988854422453344455888888.55444 PP

  == domain 6  score: -0.6 bits;  conditional E-value: 1
                 -EEE--SS-- CS
       LRR_4   4 evLdLsnNql 13 
                  +L+Ls N++
  KOO20876.1 422 MTLNLSINNI 431
                 5788884455 PP

>> LRR_8  Leucine rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.2   1.0    0.0088        17      26      41 ..     194     209 ..     184     223 .. 0.64
   2 ?    4.8   1.4     0.012        24      27      40 ..     195     208 ..     193     250 .. 0.65
   3 ?    4.6   0.1     0.014        28      26      37 ..     274     285 ..     269     292 .. 0.68
   4 ?    6.1   1.6    0.0046       9.1      26      60 ..     332     372 ..     330     373 .. 0.54
   5 ?    0.8   1.4      0.22   4.4e+02      26      36 ..     420     430 ..     388     431 .. 0.63

  Alignments for each domain:
  == domain 1  score: 5.2 bits;  conditional E-value: 0.0088
                 T--EEE--SS---GGG CS
       LRR_8  26 nLkvLdLsnNllttls 41 
                 +L+ L+Ls+N+l+   
  KOO20876.1 194 GLTALNLSDNRLKDEG 209
                 5777888888777653 PP

  == domain 2  score: 4.8 bits;  conditional E-value: 0.012
                 --EEE--SS---GG CS
       LRR_8  27 LkvLdLsnNllttl 40 
                 L+ L+Ls+N+l+  
  KOO20876.1 195 LTALNLSDNRLKDE 208
                 55555555555544 PP

  == domain 3  score: 4.6 bits;  conditional E-value: 0.014
                 T--EEE--SS-- CS
       LRR_8  26 nLkvLdLsnNll 37 
                 +L+ L+Ls+N l
  KOO20876.1 274 GLTALNLSRNHL 285
                 455666666655 PP

  == domain 4  score: 6.1 bits;  conditional E-value: 0.0046
                 T--EEE--SS---GGGG......GGGTT--S-.EEE--SS- CS
       LRR_8  26 nLkvLdLsnNllttlsp......gafsgLpsLrsLdLsgNr 60 
                 +L++L+Ls+N+l  l++      +a++    L+ LdLs N+
  KOO20876.1 332 GLTSLNLSDNQLCGLDQgitaiaDALRVNGGLTALDLSFND 372
                 57777777777655553111111455555666666666666 PP

  == domain 5  score: 0.8 bits;  conditional E-value: 0.22
                 T--EEE--SS- CS
       LRR_8  26 nLkvLdLsnNl 36 
                 +L++L+Ls N+
  KOO20876.1 420 GLMTLNLSINN 430
                 35555555554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (453 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       482  (0.0268838); expected 358.6 (0.02)
Passed bias filter:                      357  (0.0199119); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.54u 0.26s 00:00:00.80 Elapsed: 00:00:00.43
# Mc/sec: 3157.95
//
Query:       KOO20877.1  [L=168]
Description: hypothetical protein Ctob_003935 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (168 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       284  (0.0158403); expected 358.6 (0.02)
Passed bias filter:                      232  (0.0129399); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.23s 00:00:00.59 Elapsed: 00:00:00.37
# Mc/sec: 1352.86
//
Query:       KOO20878.1  [L=1395]
Description: myosin [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
   3.4e-216  719.6   0.0     5e-216  719.0   0.0    1.3  1  Myosin_head   Myosin head (motor domain)
    9.5e-20   68.6   2.7      7e-07   28.3   0.0    4.8  4  EF-hand_1     EF hand
    1.4e-16   60.1   6.0    4.3e-06   26.5   0.1    4.4  5  EF-hand_8     EF-hand domain pair
    1.5e-16   60.6   0.7    5.5e-11   42.8   0.0    3.4  3  EF-hand_7     EF-hand domain pair
    1.2e-13   49.8   4.6    3.6e-05   23.3   0.0    5.2  5  EF-hand_6     EF-hand domain
      6e-11   41.3   0.5    0.00023   20.5   0.0    3.7  3  EF-hand_5     EF hand
    7.2e-07   29.1   1.0       0.16   12.0   0.1    3.7  3  EF-hand_4     Cytoskeletal-regulatory complex EF hand
     0.0033   17.7   2.7     0.0057   17.0   0.1    2.6  3  SPARC_Ca_bdg  Secreted protein acidic and rich in cysteine Ca
  ------ inclusion threshold ------
      0.043   14.1   0.1       0.24   11.7   0.1    2.3  1  AAA_22        AAA domain
      0.073   13.0   1.4       0.44   10.5   0.7    2.6  3  Armet         Degradation arginine-rich protein for mis-foldi
        0.1   12.9   0.0       0.81   10.1   0.0    2.5  2  EF-hand_9     EF-hand domain
       0.33   11.3   0.1       0.33   11.3   0.1    4.1  5  AAA_16        AAA ATPase domain
        6.9    7.5   6.4         84    4.0   0.0    4.1  4  DUF3349       Protein of unknown function (DUF3349)


Domain annotation for each model (and alignments):
>> Myosin_head  Myosin head (motor domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  719.0   0.0  3.7e-219    5e-216       2     677 .]      33     710 ..      32     710 .. 0.95

  Alignments for each domain:
  == domain 1  score: 719.0 bits;  conditional E-value: 3.7e-219
                  SBGCGSSS-SHHHHHHHHHHHHHTT--EEEETTEEEEE--SS--STSSHHHHHHHTTS-GGGSSSSHHHHHHHHHHHHHHHTSEEEEEEESSTTSSHH CS
  Myosin_head   2 edlveLsllneasvlenlkkRykkdliYtysglvlvavnPykklkiysedvikaykgkkreelpPHifaiadeayrslledkenqsilisGEsGAGKt 99 
                   d ++L++l+ea+vl+n+++Ry+++++Yt++g++l+avnPy++l+iy+e+ ++++ +   ++ +PH+fa a+eay+++++d++ qsi++sGEsGAGKt
   KOO20878.1  33 PDCCQLTELTEATVLTNIERRYMDNKMYTFTGNILLAVNPYERLPIYEEQYMARFPDVAISKAEPHVFASAEEAYQRIRKDRRAQSIVVSGESGAGKT 130
                  699*********************************************************************************************** PP

                  HHHHHHHHHHHHHSSSSSC.TCTTHHHHHHHHHHHHHHHHHEEEESSETTEESSEEEEEEEEETTSSEEEEEEEEECE-GGGGT---TT--SBHHHHH CS
  Myosin_head 100 eatKkvlqylasvaeskek.veeeeleekilqsnPilEafGnAktvrndnssRFGKfieiefdakgkiagakietYLLEksRvvkqakeERnyHiFYq 196
                  e+ K++++yla  +   +  +  + l + ilqsnPilE fGnAkt rn+nssRFGKfi+i+fd kg + ga ++tYLLEksRvv+q ++ERnyH FY+
   KOO20878.1 131 ETNKYLMRYLAWRSRGGKGgTGGADLANAILQSNPILEGFGNAKTGRNNNSSRFGKFIRIHFDPKGGVGGAVMSTYLLEKSRVVFQGPNERNYHSFYM 228
                  ***********87765554378899************************************************************************* PP

                  HHHCSTHHHHHHTT--.TCCGSTTTTTTSSSSBTTS.-HHHHHHHHHHHHHHHT--HHHHHHHHHHHHHHHHHCTSSEEEECTTSSEEESSHHHHHHH CS
  Myosin_head 197 llagaseeekkelkle.dvkdyaylsqsgeltvdgi.ddseefketkkaldilglseeeqkeifrivaailhlGniefkkeakdeqavledeekleka 292
                  l agas+ e+ +++le  +++ya+l+qsg++   g  +ds+e+ +++ a++ +gl+e++q e+++++a+ +hlGn++f+k a++e a  +de++l+ a
   KOO20878.1 229 LQAGASAGERASFSLEpGPEKYAFLNQSGCYANTGWgEDSKEYAAMRTAMSAVGLNETTQLEMLSVLASTMHLGNVDFNKVANEEYACAADEARLALA 326
                  ****************99*************999974899********************************************************** PP

                  HHHHTS-HHHHHHHHHSEEEEETTEEEEEE-BHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSS-S-SEEEEEEEEE-B---SSB-HHHHHHHHH CS
  Myosin_head 293 aellgvdaeelekalvkrriktgkevvskalnveqaevardalakaiyerlFdwlverinkslekkkeekksfiGvLDiaGFEifeknsFEqlcinyv 390
                  ++llg   e++   l++r++k+   v++ +l+  qa+ ar+a+ k++y  lFdw+v rin s++ ++++   fiG+LD++GFEife+nsFEqlcin++
   KOO20878.1 327 SHLLGC--EDVGPLLLQRSMKVPGAVYNIQLTPPQATAARNAFGKQVYCLLFDWIVARINDSIRGNANDAMPFIGLLDVFGFEIFEVNSFEQLCINFA 422
                  ****97..578999************************************************************************************ PP

                  HHHHHHHHHHHHCHHHHHHHHHTTSSGCGS-GGGCCHHHHHHHHSSSTSHHHHHHHHHTSTTS-HHHHHHHHHHHH....TTSTTEEETTS.TTTTTE CS
  Myosin_head 391 nEkLqqlFnelvlklEqeeYvrEgiewkfidfgldnqaiidLiekkplGilslLdeecllpkatdetfleklvkaf....skhakfeksrl.kkgeak 483
                  nEkL q+F + v+k+E e Y+ E i   +i++  dnq++idLie+ p+Gi++lLd  c++pkatd +f++ + +++    ++ha++  ++   +++++
   KOO20878.1 423 NEKLHQFFLKFVFKMEEEIYKAEAIAGIKIEY-SDNQPCIDLIERPPMGIFKLLDSMCKTPKATDVKFCTSIFDEHakpgKQHAHLVVPKRrPREDTE 519
                  ********************************.7*****************************************943322345555443336999** PP

                  EEEEETTCEEEEE-TTHHHHHH----HHHHHHHHTSSSHHHHHHCCSHCHB--.........CSSSECCCCCSBHHHHHHHHHHHHHHHHCTSEEEEE CS
  Myosin_head 484 FiikHyAgkveYevegfleKnkDtlnedlvellksskkkllaelfkeeekeakaeakksekkkkkkkkkkkfktvgskfkeslaeLmktlestnphfv 581
                  F ++H+Ag+v+Y +++fleKn+D+l ++  ++l ++++ + + l + +    + e+++++++k+ +++   f++v+++f +++++L++tl+ t++hfv
   KOO20878.1 520 FSVRHFAGEVRYACTNFLEKNNDSLDTSFKDMLLQASNGVTRALAQIAA--DRDESATAGNAKSGARSVGGFASVSKRFVDDINSLVNTLNMTTAHFV 615
                  *************************************999999888754..4667778888889999999**************************** PP

                  EEE-SSSS--TT---HHHHHHHHHHTTHHHHHHHHHHSSSEEEEHHHHHHHHGGGSTTSS-SS.SSSHHHHHHHHHHHTTS-GCGEEECSSEEEET CS
  Myosin_head 582 RCikpnekkkakkldeslvleqlrclGvlegirirraGfpnRitfeefvqrYkllakkelkkllkedakkaveailkeleldkeeykiGktKiFfr 677
                  RC+kpn + k+ ++d++++++ql+c+G+le+++++r+G+pnR+ ++ ++ rYk  + +        +  +++e +    +ld+++y +G tK+F++
   KOO20878.1 616 RCMKPNARFKKLDFDRAMIKTQLQCNGTLEAVQLMRHGYPNRVPYDLMFDRYKKHLLSVP-GVKDLTPAQFCEVLAAIANLDASDYALGVTKMFLK 710
                  ****************************************************97666553.33356899*************************97 PP

>> EF-hand_1  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.3   0.0   5.1e-10     7e-07       2      28 ..    1034    1060 ..    1033    1061 .. 0.95
   2 !   20.7   0.0   1.4e-07   0.00019       2      25 ..    1074    1097 ..    1073    1098 .. 0.92
   3 !    5.9   0.0    0.0077        11       9      28 ..    1195    1214 ..    1193    1215 .. 0.88
   4 !   10.0   0.2   0.00037      0.51       2      25 ..    1228    1251 ..    1227    1252 .. 0.91

  Alignments for each domain:
  == domain 1  score: 28.3 bits;  conditional E-value: 5.1e-10
                  HHHHHHHHTTTSSSEEEHHHHHHHHHH CS
   EF-hand_1    2 lkeiFrefDkDgdGkIdfeEfkellkk 28  
                  ++ +F+  D+DgdG I+++Ef++++k+
  KOO20878.1 1034 IRAMFKQWDVDGDGAISYSEFIAVMKS 1060
                  799**********************97 PP

  == domain 2  score: 20.7 bits;  conditional E-value: 1.4e-07
                  HHHHHHHHTTTSSSEEEHHHHHHH CS
   EF-hand_1    2 lkeiFrefDkDgdGkIdfeEfkel 25  
                  ++ +F+++D D++G +df Ef+ +
  KOO20878.1 1074 VQAMFALADLDKNGSVDFAEFLVM 1097
                  789******************865 PP

  == domain 3  score: 5.9 bits;  conditional E-value: 0.0077
                  HTTTSSSEEEHHHHHHHHHH CS
   EF-hand_1    9 fDkDgdGkIdfeEfkellkk 28  
                  f ++g+G +++e+f+++l++
  KOO20878.1 1195 FNRNGNGCLELEQFVAVLET 1214
                  668*************9975 PP

  == domain 4  score: 10.0 bits;  conditional E-value: 0.00037
                  HHHHHHHHTTTSSSEEEHHHHHHH CS
   EF-hand_1    2 lkeiFrefDkDgdGkIdfeEfkel 25  
                  l+ +Fr +D D dG +++ +f++l
  KOO20878.1 1228 LEGMFRAADFDEDGIVELHQFVQL 1251
                  677******************985 PP

>> EF-hand_8  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.0       6.4   8.8e+03       9      21 ..     273     285 ..     272     293 .. 0.73
   2 !   23.8   0.1   2.2e-08     3e-05      18      53 ..    1027    1059 ..    1007    1061 .. 0.82
   3 !   26.5   0.1   3.1e-09   4.3e-06      18      53 ..    1066    1099 ..    1058    1101 .. 0.87
   4 ?   -0.9   0.0       1.1   1.5e+03      35      53 ..    1195    1213 ..    1194    1215 .. 0.90
   5 !   10.5   0.1   0.00031      0.43       7      50 ..    1205    1250 ..    1199    1251 .. 0.69

  Alignments for each domain:
  == domain 1  score: -3.3 bits;  conditional E-value: 6.4
   EF-hand_8   9 elrrilrilglkk 21 
                  +r++++++gl++
  KOO20878.1 273 AMRTAMSAVGLNE 285
                 5899998889764 PP

  == domain 2  score: 23.8 bits;  conditional E-value: 2.2e-08
   EF-hand_8   18 glkkglseeevdilfrefDtdgdGkisfeEFcvlle 53  
                  ++k     ++++++f+  D dgdG+is+ EF+++++
  KOO20878.1 1027 KTK---EVDAIRAMFKQWDVDGDGAISYSEFIAVMK 1059
                  333...5788***********************997 PP

  == domain 3  score: 26.5 bits;  conditional E-value: 3.1e-09
   EF-hand_8   18 glkkglseeevdilfrefDtdgdGkisfeEFcvlle 53  
                  g++  +se+ v+++f ++D+d++G ++f EF+v+ +
  KOO20878.1 1066 GKP--FSEKRVQAMFALADLDKNGSVDFAEFLVMQV 1099
                  666..****************************975 PP

  == domain 4  score: -0.9 bits;  conditional E-value: 1.1
   EF-hand_8   35 fDtdgdGkisfeEFcvlle 53  
                  f ++g+G + +e F+++le
  KOO20878.1 1195 FNRNGNGCLELEQFVAVLE 1213
                  899************9987 PP

  == domain 5  score: 10.5 bits;  conditional E-value: 0.00031
   EF-hand_8    7 reelrril.ril...glkkglseeevdilfrefDtdgdGkisfeEFcv 50  
                   e ++  l ++l   gl+  +  ++++ +fr++D+d+dG++ +  F++
  KOO20878.1 1205 LEQFVAVLeTTLlkrGLR--VYRKQLEGMFRAADFDEDGIVELHQFVQ 1250
                  555666665555222444..77788899*************9877765 PP

>> EF-hand_7  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.2   0.0   2.2e-07    0.0003      39      71 .]    1027    1059 ..    1009    1059 .. 0.78
   2 !   42.8   0.0     4e-14   5.5e-11       3      68 ..    1033    1096 ..    1031    1098 .. 0.92
   3 !   12.4   0.0   0.00012      0.17      11      68 ..    1195    1250 ..    1186    1251 .. 0.87

  Alignments for each domain:
  == domain 1  score: 21.2 bits;  conditional E-value: 2.2e-07
   EF-hand_7   39 sklsdeelellfkefDtdkdGvisfdEFlklyr 71  
                  + +  ++++++fk +D d+dG is++EF + ++
  KOO20878.1 1027 KTKEVDAIRAMFKQWDVDGDGAISYSEFIAVMK 1059
                  3334578**********************9986 PP

  == domain 2  score: 42.8 bits;  conditional E-value: 4e-14
   EF-hand_7    3 klkeaFkelDtdgdgyldkeellrllrkifqgagegsklsdeelellfkefDtdkdGvisfdEFlk 68  
                  +++ +Fk+ D+dgdg ++++e+  ++++  +  + g+++s++ ++++f   D+dk+G+++f EFl 
  KOO20878.1 1033 AIRAMFKQWDVDGDGAISYSEFIAVMKSVAE--RQGKPFSEKRVQAMFALADLDKNGSVDFAEFLV 1096
                  68999****************8879998766..*******************************85 PP

  == domain 3  score: 12.4 bits;  conditional E-value: 0.00012
   EF-hand_7   11 lDtdgdgyldkeellrllrkifqgagegsklsdeelellfkefDtdkdGvisfdEFlk 68  
                  + ++g+g l+ e++  +l+       +g  + +++le +f+  D d dG + +  F++
  KOO20878.1 1195 FNRNGNGCLELEQFVAVLETTLL--KRGLRVYRKQLEGMFRAADFDEDGIVELHQFVQ 1250
                  679**********9999998766..677777889*******************99998 PP

>> EF-hand_6  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.3       5.7   7.9e+03       5      13 ..     623     631 ..     621     632 .. 0.85
   2 !   23.3   0.0   2.6e-08   3.6e-05       2      27 ..    1034    1059 ..    1033    1063 .. 0.94
   3 !   12.2   0.0   9.7e-05      0.13       2      23 ..    1074    1095 ..    1073    1099 .. 0.91
   4 !    6.5   0.0    0.0065         9       8      28 ..    1194    1214 ..    1188    1220 .. 0.87
   5 ?    5.2   0.1     0.018        25       5      24 ..    1231    1250 ..    1227    1251 .. 0.88

  Alignments for each domain:
  == domain 1  score: -2.7 bits;  conditional E-value: 5.7
   EF-hand_6   5 aFklfDkdg 13 
                  Fk++D+d+
  KOO20878.1 623 RFKKLDFDR 631
                 6******96 PP

  == domain 2  score: 23.3 bits;  conditional E-value: 2.6e-08
   EF-hand_6    2 lreaFklfDkdgdGkidaeElrkalr 27  
                  +r+ Fk++D+dgdG i+++E++++++
  KOO20878.1 1034 IRAMFKQWDVDGDGAISYSEFIAVMK 1059
                  799**********************9 PP

  == domain 3  score: 12.2 bits;  conditional E-value: 9.7e-05
   EF-hand_6    2 lreaFklfDkdgdGkidaeElr 23  
                  +++ F l D d++G++d++E+ 
  KOO20878.1 1074 VQAMFALADLDKNGSVDFAEFL 1095
                  6789****************96 PP

  == domain 4  score: 6.5 bits;  conditional E-value: 0.0065
   EF-hand_6    8 lfDkdgdGkidaeElrkalrk 28  
                   f ++g+G++  e+++++l +
  KOO20878.1 1194 RFNRNGNGCLELEQFVAVLET 1214
                  5889**************986 PP

  == domain 5  score: 5.2 bits;  conditional E-value: 0.018
   EF-hand_6    5 aFklfDkdgdGkidaeElrk 24  
                   F++ D+d dG +  +++++
  KOO20878.1 1231 MFRAADFDEDGIVELHQFVQ 1250
                  7****************987 PP

>> EF-hand_5  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.5   0.0   1.7e-07   0.00023       1      25 []    1034    1058 ..    1034    1058 .. 0.93
   2 !   12.3   0.0   6.4e-05     0.088       2      22 ..    1075    1095 ..    1074    1099 .. 0.90
   3 ?    4.3   0.0     0.022        30       4      16 ..    1231    1243 ..    1228    1246 .. 0.85

  Alignments for each domain:
  == domain 1  score: 20.5 bits;  conditional E-value: 1.7e-07
                  HHHHHHHH-SS-SSCE-HHHHHHHH CS
   EF-hand_5    1 lkdtFqaiDlNgDGkIskeELktlv 25  
                  ++++F++ D++gDG Is +E+ +++
  KOO20878.1 1034 IRAMFKQWDVDGDGAISYSEFIAVM 1058
                  6899*****************9876 PP

  == domain 2  score: 12.3 bits;  conditional E-value: 6.4e-05
                  HHHHHHH-SS-SSCE-HHHHH CS
   EF-hand_5    2 kdtFqaiDlNgDGkIskeELk 22  
                  +++F  +Dl++ G +++ E+ 
  KOO20878.1 1075 QAMFALADLDKNGSVDFAEFL 1095
                  789****************95 PP

  == domain 3  score: 4.3 bits;  conditional E-value: 0.022
                  HHHHH-SS-SSCE CS
   EF-hand_5    4 tFqaiDlNgDGkI 16  
                  +F+a+D + DG +
  KOO20878.1 1231 MFRAADFDEDGIV 1243
                  7**********87 PP

>> EF-hand_4  Cytoskeletal-regulatory complex EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.5   0.1    0.0027       3.7      43      71 ..    1032    1060 ..    1010    1065 .. 0.80
   2 !   12.0   0.1   0.00011      0.16      41      68 ..    1070    1097 ..    1065    1102 .. 0.88
   3 !    5.7   0.0      0.01        14      38      76 ..    1221    1261 ..    1192    1287 .. 0.74

  Alignments for each domain:
  == domain 1  score: 7.5 bits;  conditional E-value: 0.0027
   EF-hand_4   43 dklekiwdladidedgkldfeefciamrl 71  
                  d +  +++  d+d dg + + ef+ +m+ 
  KOO20878.1 1032 DAIRAMFKQWDVDGDGAISYSEFIAVMKS 1060
                  5677788889*****************96 PP

  == domain 2  score: 12.0 bits;  conditional E-value: 0.00011
   EF-hand_4   41 eedklekiwdladidedgkldfeefcia 68  
                  +e++++ ++ lad+d++g++df ef ++
  KOO20878.1 1070 SEKRVQAMFALADLDKNGSVDFAEFLVM 1097
                  6788999******************874 PP

  == domain 3  score: 5.7 bits;  conditional E-value: 0.01
   EF-hand_4   38 skleedklekiwdladidedgkldfeefci..amrlifdlv 76  
                   ++  ++le ++  ad dedg +++++f+   +++  fd +
  KOO20878.1 1221 LRVYRKQLEGMFRAADFDEDGIVELHQFVQldSVKRYFDTL 1261
                  355679*********************98522345556665 PP

>> SPARC_Ca_bdg  Secreted protein acidic and rich in cysteine Ca binding region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.0   0.1   4.1e-06    0.0057      35     111 ..    1013    1095 ..     949    1096 .. 0.78
   2 ?   -1.4   0.0       2.1   2.9e+03      50      77 ..    1222    1249 ..    1209    1263 .. 0.71
   3 ?   -2.2   0.2       3.8   5.2e+03      20      40 ..    1261    1278 ..    1242    1302 .. 0.48

  Alignments for each domain:
  == domain 1  score: 17.0 bits;  conditional E-value: 4.1e-06
  SPARC_Ca_bdg   35 ehleelekkeeeknlkeckepvawkFsklDtnsdkvlsksELaplraplvk......lehCikpflescDadkdkkislkEwc 111 
                     +++++++ ++++ +++ +++++ +F+++D++ d+ +s sE  ++ +++ +       e+ +++++  +D+dk+++++ +E+ 
    KOO20878.1 1013 VQQKDHSETFTKTLKTKEVDAIRAMFKQWDVDGDGAISYSEFIAVMKSVAErqgkpfSEKRVQAMFALADLDKNGSVDFAEFL 1095
                    34555666666667778899**********************99999887533333369999******************995 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 2.1
  SPARC_Ca_bdg   50 keckepvawkFsklDtnsdkvlsksELa 77  
                    + ++++++ +F   D ++d++++ +   
    KOO20878.1 1222 RVYRKQLEGMFRAADFDEDGIVELHQFV 1249
                    4566677777777777777777665554 PP

  == domain 3  score: -2.2 bits;  conditional E-value: 3.8
  SPARC_Ca_bdg   20 lknlleelkereeekehleel 40  
                    l++   + +++++e+   +e 
    KOO20878.1 1261 LQKREIQHQQQAREQ---NEA 1278
                    322222222222222...111 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.1   0.00017      0.24       3      27 ..     114     138 ..     111     149 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.00017
      AAA_22   3 ktagilvvtGesGtGKTtllrrlle 27 
                 ++a+++vv GesG+GKT + + l++
  KOO20878.1 114 RRAQSIVVSGESGAGKTETNKYLMR 138
                 4899*************99887765 PP

>> Armet  Degradation arginine-rich protein for mis-folding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.0       1.4   1.9e+03      29      47 ..     473     491 ..     466     499 .. 0.84
   2 ?   10.5   0.7   0.00032      0.44      44     140 ..     966    1063 ..     928    1067 .. 0.72
   3 ?   -3.2   0.0       5.4   7.4e+03     121     137 ..    1198    1214 ..    1194    1218 .. 0.80

  Alignments for each domain:
  == domain 1  score: -1.3 bits;  conditional E-value: 1.4
       Armet  29 kelkkvCkeakgkenrlCy 47 
                 k l ++Ck+ k ++ ++C 
  KOO20878.1 473 KLLDSMCKTPKATDVKFCT 491
                 668899************6 PP

  == domain 2  score: 10.5 bits;  conditional E-value: 0.00032
       Armet   44 rlCyylgaledaatkilsevskplsvsvPvekiCeklk.kkdsqicelkyekkidlksvdlkklkvke...LkkiledWgeeCkgCieksdfikrie 136 
                  +l y++        +i +e+ + + ++v  + + +k +   + + c l+  ++ d ++   k lk ke   ++ ++++W+ + +g i  s+fi  ++
  KOO20878.1  966 KLKYHVSLA---QKQIREELNQRVTAEVKSHAMVQKASfTAEGERCTLRVVQQKDHSETFTKTLKTKEvdaIRAMFKQWDVDGDGAISYSEFIAVMK 1059
                  555555433...345666666666666666666666542667889*****99999998776766666611267789******************999 PP

       Armet  137 elkp 140 
                  ++++
  KOO20878.1 1060 SVAE 1063
                  8876 PP

  == domain 3  score: -3.2 bits;  conditional E-value: 5.4
       Armet  121 eCkgCieksdfikriee 137 
                  + +gC+e ++f+  +e 
  KOO20878.1 1198 NGNGCLELEQFVAVLET 1214
                  6789********98876 PP

>> EF-hand_9  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.0   0.00058      0.81       2      60 ..    1036    1096 ..    1035    1100 .. 0.89
   2 ?   -1.4   0.0       2.2     3e+03       3      21 ..    1231    1249 ..    1229    1251 .. 0.84

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.00058
   EF-hand_9    2 tvFevcDtqktGrVpvsrlidyLravtaq..dp.eeseLeelakelDPdgedasvdldtflr 60  
                  ++F+  D++  G +  s+ i++++ v+++  +p +e +++   +++D d + +svd+  fl+
  KOO20878.1 1036 AMFKQWDVDGDGAISYSEFIAVMKSVAERqgKPfSEKRVQAMFALADLDKN-GSVDFAEFLV 1096
                  579999**********************966454788**********9999.9****99985 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 2.2
   EF-hand_9    3 vFevcDtqktGrVpvsrli 21  
                  +F++ D ++ G V + + +
  KOO20878.1 1231 MFRAADFDEDGIVELHQFV 1249
                  79***********998766 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.1   0.00024      0.33      14      46 ..     105     138 ..     101     155 .. 0.85
   2 ?   -1.7   0.0       2.3   3.2e+03      91     137 ..     560     614 ..     522     618 .. 0.57
   3 ?   -2.5   0.5       4.3   5.9e+03     116     118 ..     811     813 ..     751     873 .. 0.49
   4 ?   -1.2   0.1       1.7   2.3e+03      82     118 ..     933     985 ..     875    1001 .. 0.47
   5 ?    0.2   0.7      0.65   8.9e+02      61     125 ..    1274    1357 ..    1214    1368 .. 0.55

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00024
      AAA_16  14 salervrsgrp.elvllsGesGvGKsslvrellr 46 
                 +a++r+r++r  +++++sGesG GK+   + l+r
  KOO20878.1 105 EAYQRIRKDRRaQSIVVSGESGAGKTETNKYLMR 138
                 689999999999**************87766666 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 2.3
      AAA_16  91 saeleawrekleealaavpelagaea........srllellkrll.allsrderpl 137
                 +++l++ ++  +e+++a+++ +ga +        +r+ + +++l+  l  ++++ +
  KOO20878.1 560 TRALAQIAADRDESATAGNAKSGARSvggfasvsKRFVDDINSLVnTLNMTTAH-F 614
                 333444444444444444444444446667778889999999988777777666.4 PP

  == domain 3  score: -2.5 bits;  conditional E-value: 4.3
      AAA_16 116 asr 118
                 + +
  KOO20878.1 811 HAH 813
                 111 PP

  == domain 4  score: -1.2 bits;  conditional E-value: 1.7
      AAA_16  82 lrqlldeaesaeleawrekleeala................avpelagaeasr 118
                 ++++  +a++ ++ + r++++e ++                a+++++ ++ +r
  KOO20878.1 933 IEAIVLKAKTEARLRERQRIHEITEavrleaqrklkyhvslAQKQIREELNQR 985
                 33333335566666666666666664445555554444444333333333344 PP

  == domain 5  score: 0.2 bits;  conditional E-value: 0.65
      AAA_16   61 dqlesaipysalaqalareellrqlldeaesaeleawrekleeala..............avpelagaea...............srllellkr 125 
                  +q+ +a  +++++q   + e  rq +d+ +s+e ++ +++   ++a              +        +               +rl ++ ++
  KOO20878.1 1274 EQN-EAQQRAVVLQHQ-KQEAERQAGDRRRSQEIAYRQQQQANVYAasmpqvppspgwdaS--------SpamrppmsegeallsHRLDQAQRQ 1357
                  222.223333344444.33666666666666666666666666666777755544444442........0333333313333444555444444 PP

>> DUF3349  Protein of unknown function (DUF3349)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.0   0.0     0.061        84       6      20 ..     646     660 ..     643     701 .. 0.83
   2 ?   -2.9   0.2         9   1.2e+04      61      88 ..     814     841 ..     789     844 .. 0.70
   3 ?    1.8   0.3      0.31   4.2e+02      15      66 ..     909     956 ..     906     994 .. 0.75
   4 ?    1.6   0.0      0.35   4.9e+02      31      87 ..    1023    1079 ..    1015    1084 .. 0.90

  Alignments for each domain:
  == domain 1  score: 4.0 bits;  conditional E-value: 0.061
                 HHHHHHHH-TT-B-H CS
     DUF3349   6 ileWLragYPegvPe 20 
                 +++ +r+gYP+ vP 
  KOO20878.1 646 AVQLMRHGYPNRVPY 660
                 6899*********96 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 9
                 HCHHHHHHHCTS---HHHHHHHHHHHHT CS
     DUF3349  61 dieelitkvteeepseedvarVaarLaa 88 
                 + ++l ++v++ e+++ + a V+a++aa
  KOO20878.1 814 RPSTLSAEVAKAEAQAREYAEVQAEVAA 841
                 4456677888889999999999888876 PP

  == domain 3  score: 1.8 bits;  conditional E-value: 0.31
                 TT-B-HHHHHHHHHHHCTT--HHHHHHHHHHHHHH--..SSS.BSHHHCHHHH CS
     DUF3349  15 PegvPeqdyvpLlalLrrrLsdeevkevaeelvaeaa.eadeavdeedieeli 66 
                 Pe ++++   +Ll  ++ ++ + e+++++ +  +ea+ +     ++++i+e+ 
  KOO20878.1 909 PEILDPKALQALLQGMDYSMMETEIEAIVLKAKTEARlR-----ERQRIHEIT 956
                 6666777778899999999*********99998888422.....333333333 PP

  == domain 4  score: 1.6 bits;  conditional E-value: 0.35
                  CTT--HHHHHHHHHHHHHH--.SSS.BSHHHCHHHHHHHCTS---HHHHHHHHHHHH CS
     DUF3349   31 rrrLsdeevkevaeelvaeaaeadeavdeedieelitkvteeepseedvarVaarLa 87  
                  +++L+ +ev+++ + + + + + d+a++ ++  +++++v+e++ ++   +rV+a  a
  KOO20878.1 1023 TKTLKTKEVDAIRAMFKQWDVDGDGAISYSEFIAVMKSVAERQGKPFSEKRVQAMFA 1079
                  578999*****99999998889**********************9999999998765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1395 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1518  (0.0846673); expected 358.6 (0.02)
Passed bias filter:                      529  (0.0295053); expected 358.6 (0.02)
Passed Vit filter:                        78  (0.00435049); expected 17.9 (0.001)
Passed Fwd filter:                        14  (0.000780858); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 1.03u 0.32s 00:00:01.35 Elapsed: 00:00:00.49
# Mc/sec: 8601.62
//
Query:       KOO20879.1  [L=177]
Description: hypothetical protein Ctob_000914 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (177 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       351  (0.0195772); expected 358.6 (0.02)
Passed bias filter:                      196  (0.010932); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.25s 00:00:00.63 Elapsed: 00:00:00.40
# Mc/sec: 1324.36
//
Query:       KOO20880.1  [L=486]
Description: pentatricopeptide repeat-containing protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.3e-18   66.4   0.0    3.5e-09   36.2   0.0    4.2  4  PPR_1            PPR repeat
    3.8e-18   65.4   0.0    4.7e-12   45.9   0.0    3.4  3  PPR_2            PPR repeat family
      7e-16   57.3   0.2    0.00012   22.0   0.0    5.3  6  PPR              PPR repeat
    1.4e-14   53.9   0.0    2.8e-14   53.0   0.0    1.4  1  Methyltransf_4   Putative methyltransferase
      3e-10   39.8   0.0    1.2e-09   37.9   0.0    1.8  2  PPR_long         Pentacotripeptide-repeat region of PRORP
    4.7e-10   39.4   0.0    5.4e-07   29.6   0.0    2.8  3  PPR_3            Pentatricopeptide repeat domain
     0.0073   17.0   0.0      0.025   15.3   0.0    2.0  1  Methyltransf_25  Methyltransferase domain
  ------ inclusion threshold ------
       0.15   12.2   0.0        0.3   11.2   0.0    1.5  1  FtsJ             FtsJ-like methyltransferase


Domain annotation for each model (and alignments):
>> PPR_1  PPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.1   0.1      0.35   7.8e+02      22      31 ..      26      35 ..      22      38 .. 0.84
   2 !   20.2   0.0   1.6e-07   0.00036       2      34 .]      41      73 ..      40      73 .. 0.96
   3 !   36.2   0.0   1.6e-12   3.5e-09       2      31 ..      76     105 ..      75     108 .. 0.87
   4 ?    4.0   0.0     0.018        41       6      17 ..     114     125 ..     112     131 .. 0.85

  Alignments for each domain:
  == domain 1  score: -0.1 bits;  conditional E-value: 0.35
                -HHHHHHHHH CS
       PPR_1 22 rvdeAfelfd 31
                ++++A elfd
  KOO20880.1 26 KLKRARELFD 35
                89*******9 PP

  == domain 2  score: 20.2 bits;  conditional E-value: 1.6e-07
                S----HHHHHHHHHHHHHTS-HHHHHHHHHHHH CS
       PPR_1  2 GlkPdvvTYNtLIdGlCkaGrvdeAfelfdeMe 34
                Gl Pd+ +++ L+++l ++Gr deA   +++M+
  KOO20880.1 41 GLTPDAHSWTNLVNCLARCGRPDEAAHAVRQMR 73
                9*******************************7 PP

  == domain 3  score: 36.2 bits;  conditional E-value: 1.6e-12
                 S----HHHHHHHHHHHHHTS-HHHHHHHHH CS
       PPR_1   2 GlkPdvvTYNtLIdGlCkaGrvdeAfelfd 31 
                 G++P+vvTY+tL+++lC aG+vd    +++
  KOO20880.1  76 GVSPNVVTYTTLVKALCDAGDVDSGALVVR 105
                 9**********************8666665 PP

  == domain 4  score: 4.0 bits;  conditional E-value: 0.018
                 -HHHHHHHHHHH CS
       PPR_1   6 dvvTYNtLIdGl 17 
                 ++ TYN L+ G+
  KOO20880.1 114 NARTYNALLRGC 125
                 899*****9996 PP

>> PPR_2  PPR repeat family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.8   0.0   1.5e-07   0.00034      10      50 .]      18      58 ..      12      58 .. 0.94
   2 !   45.9   0.0   2.1e-15   4.7e-12       1      50 []      44      93 ..      44      93 .. 0.98
   3 !    7.0   0.0    0.0029       6.4       2      18 ..     114     130 ..     111     133 .. 0.72

  Alignments for each domain:
  == domain 1  score: 20.8 bits;  conditional E-value: 1.5e-07
       PPR_2 10 IsglckkgkveeAfklfneMkkrglePnsyTysilikglck 50
                +++++k++k++ A +lf+  +++gl+P++++ + l+++l++
  KOO20880.1 18 LAWCAKRKKLKRARELFDSAREQGLTPDAHSWTNLVNCLAR 58
                67999********************************9986 PP

  == domain 2  score: 45.9 bits;  conditional E-value: 2.1e-15
       PPR_2  1 pdvvtyNtlIsglckkgkveeAfklfneMkkrglePnsyTysilikglck 50
                pd ++++ l ++l++ g+++eA     +M++ g++Pn++Ty++l+k+lc+
  KOO20880.1 44 PDAHSWTNLVNCLARCGRPDEAAHAVRQMRESGVSPNVVTYTTLVKALCD 93
                899**********************************************5 PP

  == domain 3  score: 7.0 bits;  conditional E-value: 0.0029
       PPR_2   2 dvvtyNtlIsglckkgk 18 
                 +  tyN+l+ g+++ g+
  KOO20880.1 114 NARTYNALLRGCVRVGA 130
                 55578888888877776 PP

>> PPR  PPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.0   0.1    0.0071        16       9      30 ..      20      41 ..      18      42 .. 0.89
   2 !   22.0   0.0   5.5e-08   0.00012       2      31 .]      48      77 ..      47      77 .. 0.97
   3 !   14.4   0.0   1.5e-05     0.034       1      30 [.      82     111 ..      82     111 .. 0.90
   4 !    7.8   0.0    0.0019       4.2       2      14 ..     117     129 ..     116     134 .. 0.91
   5 ?   -1.6   0.0       1.9   4.2e+03       8      19 ..     209     220 ..     199     222 .. 0.62
   6 ?   -2.7   0.0       4.2   9.5e+03       7      20 ..     242     255 ..     242     256 .. 0.83

  Alignments for each domain:
  == domain 1  score: 6.0 bits;  conditional E-value: 0.0071
         PPR  9 gycknGkleeAlelfkeMkekG 30
                 ++k  kl+ A elf+  +e G
  KOO20880.1 20 WCAKRKKLKRARELFDSAREQG 41
                599*************999888 PP

  == domain 2  score: 22.0 bits;  conditional E-value: 5.5e-08
         PPR  2 tynslIsgycknGkleeAlelfkeMkekGi 31
                +++ l+++++++G+++eA    ++M+e+G+
  KOO20880.1 48 SWTNLVNCLARCGRPDEAAHAVRQMRESGV 77
                8***************************97 PP

  == domain 3  score: 14.4 bits;  conditional E-value: 1.5e-05
         PPR   1 vtynslIsgycknGkleeAlelfkeMkekG 30 
                 vty++l++++c +G+++    + +e +e+G
  KOO20880.1  82 VTYTTLVKALCDAGDVDSGALVVREAEESG 111
                 8****************9988888877776 PP

  == domain 4  score: 7.8 bits;  conditional E-value: 0.0019
         PPR   2 tynslIsgycknG 14 
                 tyn+l++g+++ G
  KOO20880.1 117 TYNALLRGCVRVG 129
                 9*********988 PP

  == domain 5  score: -1.6 bits;  conditional E-value: 1.9
         PPR   8 sgycknGkleeA 19 
                 s+ ++ G+l++A
  KOO20880.1 209 SAMAQLGLLHDA 220
                 355666666666 PP

  == domain 6  score: -2.7 bits;  conditional E-value: 4.2
         PPR   7 IsgycknGkleeAl 20 
                 I  ++++++ e Al
  KOO20880.1 242 IELFARHRRAELAL 255
                 66799***999998 PP

>> Methyltransf_4  Putative methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.0   0.0   1.2e-17   2.8e-14       4     128 ..     285     413 ..     283     430 .. 0.92

  Alignments for each domain:
  == domain 1  score: 53.0 bits;  conditional E-value: 1.2e-17
                     EEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHCTTSSEEEEES-CCCHHHHCS-TTSEEEEEEES---..--SGGG..GGGST CS
  Methyltransf_4   4 vvleiGcGkGeflvalAkknPdknflGiEirvkvvakvlkkiealelkNlrilrgdalkvllelledgslekifilFPDP..wfKkrh..hKrRl 94 
                     +vlei+ G Ge++  +Ak+ P+++f+++E+rv++  ++ ++   ++  N+ ++ gda ++++  l+  s++ + i+ P P  w           l
      KOO20880.1 285 LVLEICAGAGEWICVQAKESPSTQFVAVELRVDRGFHIFARTLFEGTPNVSVVVGDAREIVTCRLAASSVHAVCINHPEPpeWAGGTDdsDGSNL 379
                     689*****************************************************************************88886655115689* PP

                     TSHHHHHHHHHHEEEEEEEEEEESHHHHHHHHHH CS
  Methyltransf_4  95 lqpellkelarvLkkgGvlelaTDveeyaeemlk 128
                     l +++l +    L++gG l ++TD + y ++ ++
      KOO20880.1 380 LDEKFLRACCALLVPGGTLAIVTDNKRYGKRNAA 413
                     ***************************9887665 PP

>> PPR_long  Pentacotripeptide-repeat region of PRORP
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.9   0.0   5.3e-13   1.2e-09      66     174 ..      22     129 ..       8     134 .. 0.76
   2 ?   -1.6   0.0      0.62   1.4e+03      55      83 ..     297     328 ..     279     342 .. 0.65

  Alignments for each domain:
  == domain 1  score: 37.9 bits;  conditional E-value: 5.3e-13
                 THHHHHHHHHHHHHHHHHTT----HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-S---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHCT----HHHHH CS
    PPR_long  66 kknkalargfevfeamkakgvspnEatvtalarlaaakedgdlafelvkemekagvsPrLRsyaPaLaayckagdadkaleveehlkasgveleEaela 164
                  k+k+l+r++e f++++++g +p   + t l+   a  +  d+a + v++m+++gvsP   +y  +  a+c+agd+d ++ v    + sg + +   ++
  KOO20880.1  22 AKRKKLKRARELFDSAREQGLTPDAHSWTNLVNCLARCGRPDEAAHAVRQMRESGVSPNVVTYTTLVKALCDAGDVDSGALVVREAEESGAA-NARTYN 119
                 45677888888888888888888888888888888888888888888888888888888888888888888888888877777766666654.456678 PP

                 HHHHHHHHTT CS
    PPR_long 165 aLLkvsakag 174
                 aLL+ +++ g
  KOO20880.1 120 ALLRGCVRVG 129
                 8888777776 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 0.62
                 HHHHC.HCSTTTHHHH....HHHHHHHHHHHHH CS
    PPR_long  55 lcskaeaaseskknka....largfevfeamka 83 
                 +c++a+++ + ++  a    ++rgf++f++   
  KOO20880.1 297 ICVQAKESPS-TQFVAvelrVDRGFHIFARTLF 328
                 5666654332.2222234448899999987655 PP

>> PPR_3  Pentatricopeptide repeat domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.1   0.0    0.0025       5.6      24      52 ..      20      48 ..      18      55 .. 0.85
   2 !   29.6   0.0   2.4e-10   5.4e-07       2      60 ..      33      91 ..      32      94 .. 0.95
   3 !    6.6   0.0    0.0037       8.3      13      30 ..     113     130 ..     102     140 .. 0.75

  Alignments for each domain:
  == domain 1  score: 7.1 bits;  conditional E-value: 0.0025
       PPR_3 24 ayanagnkklalevlermkkkgikPtvvt 52
                 +a+ +++k+a e ++  +++g++P   +
  KOO20880.1 20 WCAKRKKLKRARELFDSAREQGLTPDAHS 48
                68999********************7655 PP

  == domain 2  score: 29.6 bits;  conditional E-value: 2.4e-10
       PPR_3  2 ilremerkgikldvvtYthLLtayanagnkklalevlermkkkgikPtvvtyNailgvi 60
                +++ + ++g+ +d   +t L +  a+ g  + a   + +m++ g++P+vvty  + ++ 
  KOO20880.1 33 LFDSAREQGLTPDAHSWTNLVNCLARCGRPDEAAHAVRQMRESGVSPNVVTYTTLVKAL 91
                789999*************************************************9986 PP

  == domain 3  score: 6.6 bits;  conditional E-value: 0.0037
       PPR_3  13 ldvvtYthLLtayanagn 30 
                  +  tY++LL++++++g 
  KOO20880.1 113 ANARTYNALLRGCVRVGA 130
                 5888**********9985 PP

>> Methyltransf_25  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.0   1.1e-05     0.025       1      76 [.     286     361 ..     286     396 .. 0.72

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 1.1e-05
                      EEEET-TTSHHHHHHHCTSTSSEEEEEES..SHHHHHHHHHHHHHTTTTEEEEESBCCGBS...SSTTTEEEEEEESTGGG CS
  Methyltransf_25   1 vLdlGcGtGrltlalakrlgkakvtgvDi..seemleaareraeeeglnvefvqgdaedlp...fedgsfDlvvssgalhh 76 
                      vL++++G G+++   ak+ ++ ++++v++  + ++   ar+ + e  +nv++v+gda+++    ++++s+++v+++    h
       KOO20880.1 286 VLEICAGAGEWICVQAKESPSTQFVAVELrvDRGFHIFARTLF-EGTPNVSVVVGDAREIVtcrLAASSVHAVCIN----H 361
                      9***************99889*******943455566666666.5667*********9964222688888888884....3 PP

>> FtsJ  FtsJ-like methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   0.00014       0.3      23     131 ..     284     398 ..     255     418 .. 0.70

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00014
                 -EEEECT-TTSHHHHHHCCT.T.-SEEEEEESSSS...........HHHTTEEEECS-CCCSSHHHHHCHCHHHSSEEEEEE--S-SS-CHHHHHHHHH CS
        FtsJ  23 ktvvDlgaaPGgwsqvllqrlgakgkvvavDlqpm...........aplpgvttiqgditdpetiekikealserkvdlvvsDgapdvsgvhdldeylq 110
                 + v++++a+ G w+ v +++  ++++ vav l+             +  p+v+++ gd ++  t ++         v+ v+    +  +    +d    
  KOO20880.1 284 RLVLEICAGAGEWICVQAKES-PSTQFVAVELRVDrgfhifartlfEGTPNVSVVVGDAREIVTCRLAAS-----SVHAVCINHPEPPEWAGGTDDSDG 376
                 559*****************6.56********98888888876443344999999999999888875553.....455555554433333334444444 PP

                 CCCCH.HHHCCHCCCCECCCEE CS
        FtsJ 111 sqLll.aalelalkllkpggtf 131
                 s+Ll+ + l+ +++ll pggt+
  KOO20880.1 377 SNLLDeKFLRACCALLVPGGTL 398
                 4444303344455666666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (486 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       450  (0.025099); expected 358.6 (0.02)
Passed bias filter:                      356  (0.0198561); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.53u 0.25s 00:00:00.78 Elapsed: 00:00:00.42
# Mc/sec: 3503.97
//
Query:       KOO20881.1  [L=305]
Description: aldo keto reductase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.9e-45  155.3   0.0    3.7e-33  115.0   0.0    2.0  2  Aldo_ket_red  Aldo/keto reductase family


Domain annotation for each model (and alignments):
>> Aldo_ket_red  Aldo/keto reductase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.5   0.0     4e-14   7.2e-10       7      70 ..       1      69 [.       1      79 [. 0.92
   2 !  115.0   0.0   2.1e-37   3.7e-33     106     276 ..      80     273 ..      77     283 .. 0.93

  Alignments for each domain:
  == domain 1  score: 38.5 bits;  conditional E-value: 4e-14
                  SSS-ST.TS-HHHHHHHHHHHHHTT--EEE--TT-.......TTTHHHHHHHHHHHH-TTTGGG-EEEEEE CS
  Aldo_ket_red  7 wqlgskeeiskeealellrraleaGinffDtAevY.......gkgqseellGealkksrkkreeviiatKv 70
                  +++g+  +++++ea+  l++a e G+nf+DtAe Y       ++g   + ++++l +  + re+v++atKv
    KOO20881.1  1 MTWGN--QNTDAEAASQLNAAWELGVNFLDTAECYpvpvseaKQGNTDRAIAKWLRSGAWAREDVVLATKV 69
                  55666..89*********************************9***************************9 PP

  == domain 2  score: 115.0 bits;  conditional E-value: 2.1e-37
                   EE-S--TTS-.................HHHHHHHHHHHHHTTSEEEEEEES--HHHHHHH....HHTTT--EEEEE-B-BTT-HHHHTTHHHHHHHT CS
  Aldo_ket_red 106 llHrpdpslp................sieevldaleelvkeGkiraiGvSnfsveqleka....kkkkkvkivavqveynllreleeegllelckkk 182
                    +H+pd+++p                  +e+++a+ +l+k+Gkira+G+Sn++   +++      ++ +  +++vq++y+ll++ +e+gl+e+++++
    KOO20881.1  80 VIHWPDRYVPlfgstrydvtkerafvPFAEQARAMGDLIKAGKIRAWGLSNETPHGVSAFvaacAAEDVPLPASVQNSYSLLQRSDETGLVETLRAH 176
                   59***************************************************8888877888566666669************************* PP

                   T-EEEEBSTTGGGTTGTTTSS---SSSCCC-------...TS-HHHHHHHHHHHHHHHHTT--HHHHHHHHHTTSTT-SEEEE--SSHHHHHHHHGG CS
  Aldo_ket_red 183 gvpliaysplggGlltgkyqseedkedkeprkdlkrd...ertsknldaaeelselakehgvslaqlalryalsqpavgivipgasnieqlednlda 276
                   +++  +yspl+ G l+gky+  ++ +++++   +          k  +a+e++++la+ hg s+a+la++++ s+ +v+++i+ga++ +qle+nl+ 
    KOO20881.1 177 NIGYLPYSPLSAGVLSGKYRGLQSAPTGSRLALFDGYmerYLGTKGPNAVEAYCDLAEAHGLSPAALAIAFCESRAFVTSTIIGATTNAQLEENLAG 273
                   **************************999999987779777778889***********************************************975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (305 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       288  (0.0160634); expected 358.6 (0.02)
Passed bias filter:                      274  (0.0152825); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.22s 00:00:00.69 Elapsed: 00:00:00.39
# Mc/sec: 2365.07
//
Query:       KOO20882.1  [L=1066]
Description: arylsulfatase b-like protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    3.2e-45  154.9   0.0    4.4e-45  154.4   0.0    1.2  1  Sulfatase     Sulfatase
    3.7e-37  128.1  13.9    3.7e-37  128.1  13.9    2.0  2  Nramp         Natural resistance-associated macrophage protei
     0.0075   17.0   0.0      0.015   16.1   0.0    1.4  1  Sulfatase_C   C-terminal region of aryl-sulfatase
  ------ inclusion threshold ------
      0.019   14.6   0.0       0.92    9.0   0.0    2.2  2  Phosphodiest  Type I phosphodiesterase / nucleotide pyrophosp


Domain annotation for each model (and alignments):
>> Sulfatase  Sulfatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  154.4   0.0   9.9e-49   4.4e-45       1     307 [.     515     870 ..     515     872 .. 0.93

  Alignments for each domain:
  == domain 1  score: 154.4 bits;  conditional E-value: 9.9e-49
                 EEEEEEEESSE-TTGSGGGTTTSCSSHHHHHHHHTSEEESSEE-SSSSHHHHHHHHHHSS-HHHHTHSSCCSTTT.....HHCTTTS-HHHHHHHHTT- CS
   Sulfatase   1 pnvvliladdlgagdlglyggktattpnldrlaeeglrftnfysaaplcspsraalltgryphnsgvasntevgg.....gglpqteatLpellkeaGY 94 
                 p++++ laddlg++++g ++  ++ tp+l +l++ g+r+ ++y+ +  cspsra+l+tgryp+++    ++          g+p +++ Lp  l+ea Y
  KOO20882.1 515 PHIIIMLADDLGYANVGWNNAAVH-TPQLNALVADGVRLERHYVYQ-FCSPSRASLMTGRYPIHVQER-MG---PfwstyTGPPTNMTLLPAKLREAQY 607
                 899********************9.9*******************8.*****************8833.33...244479******************* PP

                 EEEEEEES-SCCSGGGSHHCCTTTSEEEETSSSCHHTCCCCCCCCCECTCCC............................................... CS
   Sulfatase  95 ntaaigkwhlgwssrqsvyknrgfdrflgfptgsaalkdpekseyngevlrv............................................... 146
                 + + +gkwhlg +s+ s + +rgf++ +gf  g ++++++  ++ n ++                                                  
  KOO20882.1 608 RVHHVGKWHLGAYSNASIPVGRGFETSFGFLDGMQDHWNHRMQGCNSSGMEDpqgdsadlpgtqwecwgnalplescdelscyanlsvrfdrdlwrdra 706
                 *****************888*********************999998777669********************************************** PP

                 ..TTTTCSHHHHHHHHHHHHH.HCCC.TSSEEEEEEE-TTSSSTCTCGGHTCCGSTTTTCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHT.TTGGG CS
   Sulfatase 147 ..ppeggysddrlldealefl.larn.dkpfflylatlapHappeapdeyakkyatffddgseaarqlleaylnsveyvDdligrvlaaLeen.glldn 240
                       g++++++++  ++ l +  + + p flyla+  +H+p + p+++++ y + +++        l++ +++v+  D+ igr++ aL+     ++n
  KOO20882.1 707 paTALDGVFSQDMYEAEARNLiASHDlASPLFLYLAFQLVHGPIQTPKRFVNLYDAATHPF-----LGLRKVWGFVTALDESIGRIVGALKARpSMWEN 800
                 9988999*******9888888788889**************************99998876.....89**********************8542789** PP

                 EEEEEEESSSSCCCG.HHTTSSSCTTCSSSHHHHBEEEEEEETTTSHC...EEECSEEEGGGHHHHHHHHT CS
   Sulfatase 241 tlvvftSDhgaslee.sngplrggkganayeggtrvPllvwwpgekap...rvseelvshiDlfptildla 307
                  +++f +D+g  le   n+plrggk  +  egg+r  ++v +    a+    + ++++ + D++ ti +la
  KOO20882.1 801 SVLIFSADNGGPLETmTNYPLRGGKF-SDFEGGIRSAAFVSGGYLPAAmrgSTLDGYAMLADWYVTICGLA 870
                 *************999999******9.*************9999999999999999999999999999998 PP

>> Nramp  Natural resistance-associated macrophage protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  128.1  13.9   8.3e-41   3.7e-37       5     288 ..      74     355 ..      70     368 .. 0.91
   2 ?    0.4   0.1     0.057   2.6e+02     307     347 ..     396     441 ..     370     452 .. 0.69

  Alignments for each domain:
  == domain 1  score: 128.1 bits;  conditional E-value: 8.3e-41
       Nramp   5 lqaGaqfGykLlwvl.llstllaillqelsarLGlvTgkglaelirerlpkkvsillwilaelaiiatdlaeviGaAialnllfgipllvgvlitavlv 102
                 +++Ga+f ++  + l ll +++++l qel +rLG  T+kg+ ++ire +++++s++ ++++ + +i++ ++e++G+  ++++  g++ +++v+++ +++
  KOO20882.1  74 ANSGARFKFSFQMGLqLLLIPVLFLTQELTVRLGAHTQKGHGACIREVYGPAMSWFCFLILSITCILATMTELAGIVGVAEI-CGLDPTISVCVASLFM 171
                 678999999998866488999*******************************************************766665.57************** PP

       Nramp 103 llllflekggyrklEaliialvlvialsFiaelflvkpdwgevlkglvvPslpg...keslllavgilGatvmphnlflhsslvqerkitidrsekeea 198
                 ++l+f     yr++E++ +++ ++  lsF++ +fl++p + +   gl+   +p    +e++ +a++ +Ga+++p+++++++s v+  ++        +a
  KOO20882.1 172 IILIF--FCPYRVVEKVAVIFGSFE-LSFVVAAFLSRPRMDKFWPGLFSFDVPPelaPEFAQMAAANIGAVIVPWMIYFQQSAVAANGVMS-----GRA 262
                 *****..*****************9.**********************999998999*******************************444.....234 PP

       Nramp 199 lkyeriDtiialivaflinlailivaAavlysggk...dvesledaaeaLepllGskaasvlFaigLlaaGlsStitgtlagqyvmegflglr 288
                    er  t+++ +++ +i++a ++++Aa+  ++++   ++++++ + +++ +l+G     vl  +g+++ +++++i+++la ++++ ++lg +
  KOO20882.1 263 EAAERTGTLLGSTLTQIIMVATMVAFAATRDKQHGhlnSIDDANAMNQVMMELFGDLPGRVLCTLGIVGGSVCAAIVVALANSWALVDALGPD 355
                 588***************************9444413677888888999******65569**************************9999866 PP

  == domain 2  score: 0.4 bits;  conditional E-value: 0.057
       Nramp 307 livilligaele.....lvkllvlsqvllslllPfaliplllltss 347
                 +++++lig  +        ++ v+    ++l +P++l++l+ll+  
  KOO20882.1 396 YAATVLIGFIIImsgvsQEDISVAGLLTNALFMPLTLLFLWLLATG 441
                 3333333333332222235788888899*************99875 PP

>> Sulfatase_C  C-terminal region of aryl-sulfatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.0   3.2e-06     0.015      20      96 ..     918     998 ..     913    1021 .. 0.76

  Alignments for each domain:
  == domain 1  score: 16.1 bits;  conditional E-value: 3.2e-06
                  TTEEEECEE...--GCGTT....-GGGTTTSSSTT-EEECCEEEEETTT-TT--S-TTSTTCCHHHHHHHHHHHHHHHCCC--- CS
  Sulfatase_C  20 gkyKahfvt...psfdpeg....aegcygsecvekvtehdpPllFdlerDpsEkyplsaespeykevlkeikkaveehkktlkp 96 
                  g++K+   t   ++++p+     ++ c++++ + k++  +   lF+++ DpsE+++l+   ++ + vl++++k +e++++t+ +
   KOO20882.1 918 GDWKLMTGTqgyNTWSPPVgwpaDYYCDDRNASAKLECGEGGCLFNVRLDPSERHDLA---TKNASVLEAMQKRLEAMRATVWH 998
                  667777666555556555445445666666655889999999****************...67788888899999999988755 PP

>> Phosphodiest  Type I phosphodiesterase / nucleotide pyrophosphatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.0   0.0   0.00021      0.92      20      59 ..     538     575 ..     532     577 .. 0.91
   2 ?    3.2   0.0     0.013        56     200     234 ..     776     811 ..     757     858 .. 0.81

  Alignments for each domain:
  == domain 1  score: 9.0 bits;  conditional E-value: 0.00021
                   TSHHHHHHHHHSEEESEEE-SSS-SHHHHHHHHHHSS-HH CS
  Phosphodiest  20 llpnlaaLakegvsapnlrpvfPtlTfpnhaslvTGlyPg 59 
                   ++p l+aL   gv+ +  r ++  +  p+ asl+TG+yP 
    KOO20882.1 538 HTPQLNALVADGVRLE--RHYVYQFCSPSRASLMTGRYPI 575
                   89**************..99999****************6 PP

  == domain 2  score: 3.2 bits;  conditional E-value: 0.013
                   HHHHHHHHHHHHHHHHHHT.TGTTTEEEEEEES--- CS
  Phosphodiest 200 alrrvDkaigdLlealder.glsaetniilvSDHGm 234
                    +  +D+ ig+++ al+ r  ++++  +i ++D G 
    KOO20882.1 776 FVTALDESIGRIVGALKARpSMWENSVLIFSADNGG 811
                   57789****************************985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1066 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       690  (0.0384851); expected 358.6 (0.02)
Passed bias filter:                      451  (0.0251548); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.71u 0.25s 00:00:00.96 Elapsed: 00:00:00.40
# Mc/sec: 8006.62
//
Query:       KOO20883.1  [L=319]
Description: had family ia [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.3e-23   83.2   0.0    5.7e-23   81.9   0.0    1.6  1  HAD_2           Haloacid dehalogenase-like hydrolase
    9.7e-20   71.8   1.2    4.4e-19   69.6   1.2    2.0  1  Hydrolase       haloacid dehalogenase-like hydrolase
    1.4e-09   38.7   0.4    3.8e-09   37.2   0.4    1.8  1  HAD             haloacid dehalogenase-like hydrolase
    3.2e-06   27.1   0.1    8.5e-06   25.7   0.1    1.7  1  Hydrolase_like  HAD-hyrolase-like
     0.0024   18.0   0.0      0.094   12.8   0.0    2.5  2  Hydrolase_6     Haloacid dehalogenase-like hydrolase


Domain annotation for each model (and alignments):
>> HAD_2  Haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   81.9   0.0   1.6e-26   5.7e-23       1     176 [.      17     221 ..      17     223 .. 0.86

  Alignments for each domain:
  == domain 1  score: 81.9 bits;  conditional E-value: 1.6e-26
       HAD_2   1 iiFDlDgTlldteeliiqafnelleey........................glselseeelrkliglslrellrklgeseeeee..kieellrkyneek 73 
                 ++FD DgTlld + +++ af+e++e+                         g+   ++  +++  +l+  ++    ++   ++   +++ l+   ++ +
  KOO20883.1  17 VVFDKDGTLLDFNATWLPAFREAAERValeagekdlapallkaggwleeaeGPRITPDGLFHHATNLEIAQAWIDTQPIVANHFanDVTALMTLLESTL 115
                 79**********************999*********************998666666666677777777777766666655555664444444444444 PP

       HAD_2  74 kk...kevkpydgvkelLeeLkeagyklgivTsksreaveekleqlgiesyFdvivtsedvekkKPdpeviekaleklklkkeeviyvGDsptDieaak 169
                 k+   +   p+  ++++L eL++ag++l++vT+ s++ ++ +l++lg+++yF  i++ +  ++ KP    i++a+e  +lk++++i+vGDs +D+ a++
  KOO20883.1 116 KEctvRDAAPLGPAEDVLRELRAAGLHLAVVTNDSEAIARAQLARLGWTDYFGSIIGFDSGFGGKPGGGGIRAAIEAAGLKPQQAIMVGDSESDLVAGQ 214
                 444335999****************************************************************************************** PP

       HAD_2 170 kagikvi 176
                  ag+ + 
  KOO20883.1 215 VAGCAFT 221
                 ***9886 PP

>> Hydrolase  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.6   1.2   1.2e-22   4.4e-19       1     210 []      14     217 ..      14     217 .. 0.75

  Alignments for each domain:
  == domain 1  score: 69.6 bits;  conditional E-value: 1.2e-22
                 SSEEEEESBTTTBCHHHHHHHHHHHHCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHH.HHHHHETTTE.....HHHHTHHHHHHHH.....HCHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxx.....xxxxxxxxxxxxx.....xxxxxxxx RF
   Hydrolase   1 iktvvfDkdGTLttgepsvedvivsaalalaaaletgsehpigkalvaaakarsgal.tgfatfigrg.....ayaigkpewltal.....dippdlga 88 
                 i +vvfDkdGTL++ +     ++++a  a+++ale g e+ ++ al +a   +++a   +++     g     + ++  + w++ +     ++ +d+ a
  KOO20883.1  14 IAVVVFDKDGTLLDFNATWLPAFREA--AERVALEAG-EKDLAPALLKAGGWLEEAEgPRITP---DGlfhhaTNLEIAQAWIDTQpivanHFANDVTA 106
                 579*************9999999999..899999999.6666666655554442222233333...223334333333444555553333335555555 PP

                 HHHHHHHHCHHHHHHTTHHHHHHHHHHTHHBHTTHHHHHHHHHHTTEEEEEEESSEHHHHHHHHHHTT.GGGESEEEEHHCESSTTTSHHHHHHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   Hydrolase  89 aigsaqsqgrtvallqaralavftiadplkvkpeaaeavasLkaagievvlltgdnpetaeraanqlG.ddyfdaviasdietvakpspegkvaaireL 186
                  ++ ++s  ++  +            d   +   a++++++L+aag+ ++++t+d+++ a++ + +lG  dyf  +i+ d    +kp   g +aai+  
  KOO20883.1 107 LMTLLESTLKECTVR-----------DA-APLGPAEDVLRELRAAGLHLAVVTNDSEAIARAQLARLGwTDYFGSIIGFDSGFGGKPGGGGIRAAIEAA 193
                 555555555555555...........44.48999***************************99999*******9999999999**************** PP

                 TSTGGGEEEEESSHHHHHHHHHTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxx RF
   Hydrolase 187 qgkpeevamVGDgvnDaaalaaAg 210
                 + kp++ +mVGD+  D+ a++ Ag
  KOO20883.1 194 GLKPQQAIMVGDSESDLVAGQVAG 217
                 ********************9997 PP

>> HAD  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.2   0.4   1.1e-12   3.8e-09       1     184 [.      17     210 ..      17     214 .. 0.75

  Alignments for each domain:
  == domain 1  score: 37.2 bits;  conditional E-value: 1.1e-12
         HAD   1 alfDfDgTLldgdsle......lllrfllrrgaprlwralrek..lllal.......frellrldraglaelleallaglseelaaelerfv...aevi 81 
                 ++fD DgTLld +  +      +  r+ l+ g+++l+ al+ +  +l+            + +  ++++a+++  +    + ++a+++ +++   ++  
  KOO20883.1  17 VVFDKDGTLLDFNATWlpafreAAERVALEAGEKDLAPALLKAggWLEEAegpritpDGLFHHATNLEIAQAWIDTQPIVANHFANDVTALMtllESTL 115
                 79**********999999777777777777777777666666666333336888888444444445688888888777777888888888889985555 PP

         HAD  82 rpk....lldp..galellaahraaGdrvvvvSgglrplvepllaelgadevlatelevddrltgelglegkpvrgegkvaalrewlaaegegidleev 174
                 +++    +  p   a ++l++ raaG +++vv++  + ++++ la+lg      t      +++g + ++++   g+     +r+  a e +g+++   
  KOO20883.1 116 KECtvrdA-APlgPAEDVLRELRAAGLHLAVVTNDSEAIARAQLARLG-----WT------DYFGSIIGFDSGFGGKPGGGGIRA--AIEAAGLKPQQA 200
                 55533222.2466***********************************.....88......888886666666666444478888..666677777889 PP

         HAD 175 vayGDspsDl 184
                 + +GDs+sDl
  KOO20883.1 201 IMVGDSESDL 210
                 *********9 PP

>> Hydrolase_like  HAD-hyrolase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.7   0.1   2.4e-09   8.5e-06       3      45 ..     179     220 ..     177     224 .. 0.95

  Alignments for each domain:
  == domain 1  score: 25.7 bits;  conditional E-value: 2.4e-09
                     STTSSHHHHHHHHHH---GGGEEEEES-TTTHHHHHHHCT-EE CS
  Hydrolase_like   3 gKPepemydfalevlgsdpeevlmiGDrlatDiagAnnaGwks 45 
                     gKP  + +++a e+ g++p++ +m+GD+ ++D+ +++ aG+ +
      KOO20883.1 179 GKPGGGGIRAAIEAAGLKPQQAIMVGDS-ESDLVAGQVAGCAF 220
                     9***************************.***********975 PP

>> Hydrolase_6  Haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.4   0.0     0.046   1.6e+02       1      19 [.      17      36 ..      17      51 .. 0.73
   2 !   12.8   0.0   2.6e-05     0.094      11      46 ..     121     156 ..     113     165 .. 0.82

  Alignments for each domain:
  == domain 1  score: 2.4 bits;  conditional E-value: 0.046
                 EEEESTTTSEETTE.E-TTH CS
  Hydrolase_6  1 flfDidGvLwrgdk.aipga 19
                 ++fD dG+L++++   +p  
   KOO20883.1 17 VVFDKDGTLLDFNAtWLPAF 36
                 69********9654145554 PP

  == domain 2  score: 12.8 bits;  conditional E-value: 2.6e-05
                  ETTEE-TTHHHHHHHHHHTT-EEEEEE---SS-HHH CS
  Hydrolase_6  11 rgdkaipgaaealnalraagkpvvllTNnsskseee 46 
                  r+  ++  a+++l+ lraag +++++TN s    ++
   KOO20883.1 121 RDAAPLGPAEDVLRELRAAGLHLAVVTNDSEAIARA 156
                  56678889********************99765444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (319 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       572  (0.0319036); expected 358.6 (0.02)
Passed bias filter:                      399  (0.0222544); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.46u 0.26s 00:00:00.72 Elapsed: 00:00:00.41
# Mc/sec: 2360.47
//
Query:       KOO20884.1  [L=465]
Description: hypothetical protein Ctob_000925 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.1e-09   36.3   0.0    0.00053   19.3   0.0    2.5  2  EF-hand_1  EF hand
    2.7e-09   36.2   0.1     0.0015   18.3   0.0    2.5  2  EF-hand_6  EF-hand domain
    7.4e-09   35.9   0.0    1.2e-08   35.2   0.0    1.4  1  EF-hand_7  EF-hand domain pair
    6.1e-07   28.7   0.2      0.017   14.6   0.0    2.8  3  EF-hand_5  EF hand
    0.00067   19.5   0.0     0.0048   16.7   0.0    2.2  2  EF-hand_8  EF-hand domain pair
  ------ inclusion threshold ------
      0.041   13.5   0.1       0.12   11.9   0.1    1.7  2  HTH_24     Winged helix-turn-helix DNA-binding
      0.076   13.7   0.2       0.51   11.0   0.1    2.4  1  PIG-L      GlcNAc-PI de-N-acetylase


Domain annotation for each model (and alignments):
>> EF-hand_1  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.4   0.0   7.9e-06      0.02       6      27 ..     215     236 ..     211     238 .. 0.91
   2 !   19.3   0.0   2.1e-07   0.00053       1      26 [.     246     271 ..     246     273 .. 0.93

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 7.9e-06
                 HHHHTTTSSSEEEHHHHHHHHH CS
   EF-hand_1   6 FrefDkDgdGkIdfeEfkellk 27 
                 F+  D++gdGk+ + E++++++
  KOO20884.1 215 FKQWDTNGDGKVRKAELRKAVA 236
                 999***************9986 PP

  == domain 2  score: 19.3 bits;  conditional E-value: 2.1e-07
                 HHHHHHHHHTTTSSSEEEHHHHHHHH CS
   EF-hand_1   1 elkeiFrefDkDgdGkIdfeEfkell 26 
                 e++++F+ +D+Dg G I+f+E+++++
  KOO20884.1 246 EVDRLFESYDRDGGGAIEFQELQRAI 271
                 799********************987 PP

>> EF-hand_6  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.3   0.0   5.9e-07    0.0015       6      30 ..     215     238 ..     213     239 .. 0.91
   2 !   15.4   0.0   4.8e-06     0.012       2      26 ..     247     271 ..     246     271 .. 0.91

  Alignments for each domain:
  == domain 1  score: 18.3 bits;  conditional E-value: 5.9e-07
   EF-hand_6   6 FklfDkdgdGkidaeElrkalrkal 30 
                 Fk++D++gdGk+ ++Elrka   +l
  KOO20884.1 215 FKQWDTNGDGKVRKAELRKAVA-LL 238
                 9******************987.55 PP

  == domain 2  score: 15.4 bits;  conditional E-value: 4.8e-06
   EF-hand_6   2 lreaFklfDkdgdGkidaeElrkal 26 
                 ++++F+ +D+dg G i ++El++a+
  KOO20884.1 247 VDRLFESYDRDGGGAIEFQELQRAI 271
                 6789******************985 PP

>> EF-hand_7  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.2   0.0   4.8e-12   1.2e-08       7      69 ..     214     270 ..     210     272 .. 0.94

  Alignments for each domain:
  == domain 1  score: 35.2 bits;  conditional E-value: 4.8e-12
   EF-hand_7   7 aFkelDtdgdgyldkeellrllrkifqgagegsklsdeelellfkefDtdkdGvisfdEFlkl 69 
                  Fk+ Dt+gdg+++k+el++++         g +++++e+++lf+  D d+ G i f+E++++
  KOO20884.1 214 SFKQWDTNGDGKVRKAELRKAVA------LLGIDVPSHEVDRLFESYDRDGGGAIEFQELQRA 270
                 6*********************9......999999999*********************9987 PP

>> EF-hand_5  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.0       2.7     7e+03      16      23 ..      53      60 ..      53      62 .. 0.82
   2 !   14.6   0.0   6.7e-06     0.017       5      23 ..     215     233 ..     212     236 .. 0.89
   3 !   11.3   0.1   7.5e-05      0.19       3      23 ..     249     269 ..     247     272 .. 0.89

  Alignments for each domain:
  == domain 1  score: -3.2 bits;  conditional E-value: 2.7
                E-HHHHHH CS
   EF-hand_5 16 IskeELkt 23
                Is+ EL +
  KOO20884.1 53 ISAAELGE 60
                9****964 PP

  == domain 2  score: 14.6 bits;  conditional E-value: 6.7e-06
                 HHHH-SS-SSCE-HHHHHH CS
   EF-hand_5   5 FqaiDlNgDGkIskeELkt 23 
                 F++ D+NgDGk+ k EL++
  KOO20884.1 215 FKQWDTNGDGKVRKAELRK 233
                 9999************987 PP

  == domain 3  score: 11.3 bits;  conditional E-value: 7.5e-05
                 HHHHHH-SS-SSCE-HHHHHH CS
   EF-hand_5   3 dtFqaiDlNgDGkIskeELkt 23 
                  +F+  D +g G I ++EL++
  KOO20884.1 249 RLFESYDRDGGGAIEFQELQR 269
                 48*****************98 PP

>> EF-hand_8  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.5   0.0     0.013        32      32      47 ..     215     230 ..     215     231 .. 0.86
   2 !   16.7   0.0   1.9e-06    0.0048       2      47 ..     223     266 ..     222     268 .. 0.95

  Alignments for each domain:
  == domain 1  score: 4.5 bits;  conditional E-value: 0.013
   EF-hand_8  32 frefDtdgdGkisfeE 47 
                 f+  Dt+gdGk+ + E
  KOO20884.1 215 FKQWDTNGDGKVRKAE 230
                 7888********8877 PP

  == domain 2  score: 16.7 bits;  conditional E-value: 1.9e-06
   EF-hand_8   2 kgkItreelrrilrilglkkglseeevdilfrefDtdgdGkisfeE 47 
                 +gk+ ++elr+++++lg+   +  +evd lf   D+dg G+i f E
  KOO20884.1 223 DGKVRKAELRKAVALLGID--VPSHEVDRLFESYDRDGGGAIEFQE 266
                 799999***********99..*********************9988 PP

>> HTH_24  Winged helix-turn-helix DNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.1   4.7e-05      0.12      14      36 ..      49      71 ..      48      72 .. 0.92
   2 ?   -3.5   0.0       3.2   8.2e+03      27      42 ..      86     101 ..      85     102 .. 0.81

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 4.7e-05
      HTH_24 14 knprisqreLAerlglSpstvnr 36
                + ++is +eL er+ lS+++v++
  KOO20884.1 49 ETAGISAAELGERVALSRGAVSA 71
                579******************85 PP

  == domain 2  score: -3.5 bits;  conditional E-value: 3.2
      HTH_24  27 lglSpstvnrrlkrLe 42 
                 l++ ++++ + + +Le
  KOO20884.1  86 LNVQLAACEQAVAELE 101
                 6777889999999998 PP

>> PIG-L  GlcNAc-PI de-N-acetylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.1    0.0002      0.51      41      82 ..     213     250 ..      64     271 .. 0.88

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.0002
                 -STTTTHH-HHHHHHHHHHHHHHHHCTE..EEEEECCCBTT- CS
       PIG-L  41 platleekeelaeiRekEaraaakhlgvadedvffldfpDgs 82 
                  +++ ++ ++ +++R++E+r+a++ lg+   dv+  ++ D+ 
  KOO20884.1 213 GSFKQWDTNGDGKVRKAELRKAVALLGI---DVPSHEV-DRL 250
                 467788889*******************...6666554.444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (465 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1135  (0.0633053); expected 358.6 (0.02)
Passed bias filter:                      393  (0.0219198); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.59u 0.27s 00:00:00.86 Elapsed: 00:00:00.43
# Mc/sec: 3244.13
//
Query:       KOO20885.1  [L=1898]
Description: nod3 protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      7e-21   72.5  10.9     0.0012   18.7   0.1    8.1  8  LRR_6      Leucine Rich repeat
    0.00021   21.6   7.7     0.0067   16.8   0.1    5.2  5  LRR_4      Leucine Rich repeats (2 copies)
    0.00078   19.4   0.1     0.0067   16.4   0.1    2.4  1  NACHT      NACHT domain
     0.0011   18.7   3.5        1.4    8.7   0.0    5.4  5  LRR_8      Leucine rich repeat
  ------ inclusion threshold ------
      0.038   14.4   0.5       0.34   11.3   0.0    3.0  2  AAA_16     AAA ATPase domain
      0.081   13.5   0.2         17    6.4   0.0    4.6  5  LRR_1      Leucine Rich Repeat
        0.1   12.9   0.0       0.44   10.8   0.0    2.1  2  AAA_22     AAA domain


Domain annotation for each model (and alignments):
>> LRR_6  Leucine Rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.1       1.8   4.7e+03       6      16 ..    1346    1356 ..    1346    1356 .. 0.88
   2 !   12.5   0.0   4.6e-05      0.12       2      24 .]    1370    1392 ..    1369    1392 .. 0.90
   3 ?   -0.5   0.0       0.7   1.8e+03       4      24 .]    1521    1541 ..    1519    1541 .. 0.91
   4 !   18.7   0.1   4.8e-07    0.0012       2      24 .]    1591    1613 ..    1590    1613 .. 0.95
   5 !    7.0   0.0    0.0026       6.7       2      24 .]    1659    1681 ..    1658    1681 .. 0.93
   6 !   14.1   0.3   1.4e-05     0.036       5      24 .]    1745    1764 ..    1744    1764 .. 0.96
   7 !    6.5   0.0    0.0039        10       4      24 .]    1774    1794 ..    1772    1794 .. 0.90
   8 !   12.4   0.0   5.2e-05      0.13       3      23 ..    1803    1823 ..    1801    1823 .. 0.89

  Alignments for each domain:
  == domain 1  score: -1.8 bits;  conditional E-value: 1.8
       LRR_6    6 teLdLsgNdIg 16  
                  t+ dLs N I+
  KOO20885.1 1346 TSIDLSENRID 1356
                  789*****996 PP

  == domain 2  score: 12.5 bits;  conditional E-value: 4.6e-05
       LRR_6    2 nthLteLdLsgNdIgDeGaeaLa 24  
                  +++LteL+++ N +g +G+  +a
  KOO20885.1 1370 SPTLTELNIAKNRLGPKGGFVIA 1392
                  68****************98776 PP

  == domain 3  score: -0.5 bits;  conditional E-value: 0.7
       LRR_6    4 hLteLdLsgNdIgDeGaeaLa 24  
                  h+teLd ++ ++ +eGa  La
  KOO20885.1 1521 HVTELDTRYSGMEGEGARLLA 1541
                  9999**99999******9987 PP

  == domain 4  score: 18.7 bits;  conditional E-value: 4.8e-07
       LRR_6    2 nthLteLdLsgNdIgDeGaeaLa 24  
                  +++LteLd+++N Ig +Gae La
  KOO20885.1 1591 SSSLTELDVRSNLIGAVGAEQLA 1613
                  689******************98 PP

  == domain 5  score: 7.0 bits;  conditional E-value: 0.0026
       LRR_6    2 nthLteLdLsgNdIgDeGaeaLa 24  
                  ++++t L+L+ N +g eG+ a++
  KOO20885.1 1659 SSSVTQLNLQENTLGFEGGRAIS 1681
                  7899****************996 PP

  == domain 6  score: 14.1 bits;  conditional E-value: 1.4e-05
       LRR_6    5 LteLdLsgNdIgDeGaeaLa 24  
                  L+ L+L+ N+I+D G++aL+
  KOO20885.1 1745 LRVLNLRNNEIDDIGLSALS 1764
                  89****************96 PP

  == domain 7  score: 6.5 bits;  conditional E-value: 0.0039
       LRR_6    4 hLteLdLsgNdIgDeGaeaLa 24  
                  +L+ L L+ N+Ig++G+ a+a
  KOO20885.1 1774 WLERLFLNKNHIGNVGLAAFA 1794
                  5888889***********997 PP

  == domain 8  score: 12.4 bits;  conditional E-value: 5.2e-05
       LRR_6    3 thLteLdLsgNdIgDeGaeaL 23  
                  + L+eL +s N IgD G+ aL
  KOO20885.1 1803 NMLKELGISLNRIGDPGLHAL 1823
                  67***************9766 PP

>> LRR_4  Leucine Rich repeats (2 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.1       6.6   1.7e+04      11      24 ..     489     502 ..     481     502 .. 0.86
   2 ?    2.7   0.0     0.071   1.8e+02       5      36 ..    1347    1383 ..    1346    1386 .. 0.61
   3 ?    1.1   0.0      0.22   5.7e+02      24      38 ..    1593    1606 ..    1579    1616 .. 0.68
   4 ?   -0.4   0.5      0.71   1.8e+03       5      33 ..    1640    1670 ..    1632    1676 .. 0.55
   5 !   16.8   0.1   2.6e-06    0.0067       3      39 ..    1745    1788 ..    1743    1792 .. 0.84

  Alignments for each domain:
  == domain 1  score: -3.5 bits;  conditional E-value: 6.6
                 S---E-S-HHH-TT CS
       LRR_4  11 Nqltdiplleklpn 24 
                 N l+++pll +lpn
  KOO20885.1 489 NALKEVPLLLSLPN 502
                 89999999777998 PP

  == domain 2  score: 2.7 bits;  conditional E-value: 0.071
                  EEE--SS---E-S-....HH..H-TT--EEE-.-S--- CS
       LRR_4    5 vLdLsnNqltdipl....le..klpnLkeLdLsgNnli 36  
                  ++dLs N++   ++    ++    p L+eL++  N ++
  KOO20885.1 1347 SIDLSENRIDMTEFaiiePSirESPTLTELNIAKN-RL 1383
                  67888888664444444311435888999999777.44 PP

  == domain 3  score: 1.1 bits;  conditional E-value: 0.22
                  T--EEE-.-S----- CS
       LRR_4   24 nLkeLdLsgNnlitd 38  
                  +L+eLd+ + nli+ 
  KOO20885.1 1593 SLTELDV-RSNLIGA 1606
                  4666666.4335544 PP

  == domain 4  score: -0.4 bits;  conditional E-value: 0.71
                  EEE--SS---.E-S-.HHH-TT--EEE-.-S CS
       LRR_4    5 vLdLsnNqlt.dipl.leklpnLkeLdLsgN 33  
                  +LdLsn  l  + ++ +    + ++L+L +N
  KOO20885.1 1640 ELDLSNKSLGpTEGPdIVTSSSVTQLNLQEN 1670
                  4555555555333333224566666666555 PP

  == domain 5  score: 16.8 bits;  conditional E-value: 2.6e-06
                  --EEE--SS---E-S-..HH.....H.-TT--EEE-.-S-----G CS
       LRR_4    3 LevLdLsnNqltdipl..le.....k.lpnLkeLdLsgNnlitdl 39  
                  L+vL+L+nN + di+l  l+     + +  L+ L L+ N  i+++
  KOO20885.1 1745 LRVLNLRNNEIDDIGLsaLSgavadGaMVWLERLFLNKN-HIGNV 1788
                  9***************66448899966*********777.88877 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   0.1   2.6e-06    0.0067       3     161 ..     816    1002 ..     814    1007 .. 0.67

  Alignments for each domain:
  == domain 1  score: 16.4 bits;  conditional E-value: 2.6e-06
                  EEEEC-TTTCHHHHHHHHHHHHCTS-SCCCC-SEEEEEETTTTTTS-...-HCHHHCCCCTS--SSS-C.....CHHHHCCSCCCEE.......... CS
       NACHT    3 vilqGeaGsGKTtLlqklalawaegklpqgafklvFflslrelsrsgnarsladllfsqlpepaapvse.....vwavllelperlL.......... 84  
                  ++l+G++  GKT L+ +l++    ++++++        + r+ ++s    + +d +   + ++a+p+++     v + ++el++ lL          
  KOO20885.1  816 ILLTGPPAAGKTCLMSQLIMHSLGREQKAK--------PARTEPDSA---RSKDAIKGSGVASADPSRTytlfpVLIKVQELQRLLLikdnshifag 901 
                  567777777777777776666555554543........555555554...44777777777777777776666655555555555556666666666 PP

                  .................................EEEE-STT-SS-TCH.........HHHHHCTTTTT--EE.EEEEECCCHHHHCTTSSCE...EE CS
       NACHT   85 .................................lilDglDelvtdlgqkekqpvrtlLselirkkllpeasl.lltvrpralrdleeqleea.ivle 146 
                                                   ++lDg+De  +  +q         +++ +++ l p+ ++ l+t+rp +l++    +    ++l+
  KOO20885.1  902 awnwidaylrckhgatdetylmmrqtlmarramILLDGIDEGGKMREQ---------IERHVTEVLAPQGHVmLVTSRPAGLNES--AFDIYfHRLQ 987 
                  666666666666666666666666666666666**********98888.........8888888888876652789999999443..333335689* PP

                  EE--TCCHHHHHHHH CS
       NACHT  147 vegfsesrrkqlvrk 161 
                  ++++ e++ ++++ +
  KOO20885.1  988 MKPLREDQQQTVIKQ 1002
                  *********999876 PP

>> LRR_8  Leucine rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.1      0.51   1.3e+03       1      13 [.    1371    1383 ..    1371    1384 .. 0.74
   2 ?    1.5   0.0     0.099   2.5e+02       2      19 ..    1593    1610 ..    1592    1614 .. 0.74
   3 ?   -0.1   0.0      0.31     8e+02      23      37 ..    1658    1672 ..    1636    1678 .. 0.56
   4 !    8.7   0.0   0.00056       1.4      24      47 ..    1742    1765 ..    1732    1768 .. 0.82
   5 ?    1.8   0.0     0.078     2e+02       3      22 ..    1775    1794 ..    1770    1817 .. 0.67

  Alignments for each domain:
  == domain 1  score: -0.8 bits;  conditional E-value: 0.51
                  TT-SEEE-TTS-- CS
       LRR_8    1 pnLtsLdLsnNrl 13  
                  p+Lt+L++ +Nrl
  KOO20885.1 1371 PTLTELNIAKNRL 1383
                  5788888888876 PP

  == domain 2  score: 1.5 bits;  conditional E-value: 0.099
                  T-SEEE-TTS--SEE-TT CS
       LRR_8    2 nLtsLdLsnNrltsldde 19  
                  +Lt+Ld+++N + +++ e
  KOO20885.1 1593 SLTELDVRSNLIGAVGAE 1610
                  788888888888877765 PP

  == domain 3  score: -0.1 bits;  conditional E-value: 0.31
                  T-TT--EEE--SS-- CS
       LRR_8   23 glsnLkvLdLsnNll 37  
                  + s+++ L+L +N+l
  KOO20885.1 1658 TSSSVTQLNLQENTL 1672
                  345666666666665 PP

  == domain 4  score: 8.7 bits;  conditional E-value: 0.00056
                  -TT--EEE--SS---GGGGGGGTT CS
       LRR_8   24 lsnLkvLdLsnNllttlspgafsg 47  
                  +++L+vL+L+nN+++ +   a+sg
  KOO20885.1 1742 FNALRVLNLRNNEIDDIGLSALSG 1765
                  5689**********9998888876 PP

  == domain 5  score: 1.8 bits;  conditional E-value: 0.078
                  -SEEE-TTS--SEE-TTSST CS
       LRR_8    3 LtsLdLsnNrltslddeaFk 22  
                  L++L L++N++ +++  aF 
  KOO20885.1 1775 LERLFLNKNHIGNVGLAAFA 1794
                  67788888888888777774 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.4       1.9   4.9e+03      72      84 ..     568     580 ..     506     645 .. 0.51
   2 ?   11.3   0.0   0.00013      0.34      20      51 ..     809     841 ..     795     904 .. 0.77

  Alignments for each domain:
  == domain 1  score: -2.3 bits;  conditional E-value: 1.9
      AAA_16  72 laqalareellrq 84 
                 +a+a  r    ++
  KOO20885.1 568 IASAELRLAQATK 580
                 2222222222222 PP

  == domain 2  score: 11.3 bits;  conditional E-value: 0.00013
      AAA_16  20 rsgrpelvllsGesGvGKsslv.rellralekd 51 
                  +++  ++ll+G+++ GK+ l+ + ++++l ++
  KOO20885.1 809 MANSKACILLTGPPAAGKTCLMsQLIMHSLGRE 841
                 334449****************66677777777 PP

>> LRR_1  Leucine Rich Repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   0.0       1.3   3.4e+03       2      12 ..    1373    1383 ..    1372    1393 .. 0.82
   2 ?   -0.3   0.0       1.1   2.8e+03       1      12 [.    1593    1604 ..    1593    1617 .. 0.84
   3 ?   -3.7   0.0         7   1.8e+04       4      12 ..    1640    1648 ..    1639    1655 .. 0.79
   4 ?    6.4   0.0    0.0068        17       2      21 ..    1745    1764 ..    1744    1766 .. 0.84
   5 ?   -2.7   0.0       6.7   1.7e+04       2      17 ..    1775    1790 ..    1775    1794 .. 0.77

  Alignments for each domain:
  == domain 1  score: -0.6 bits;  conditional E-value: 1.3
       LRR_1    2 LrhLdLsnnpl 12  
                  L++L++  n+l
  KOO20885.1 1373 LTELNIAKNRL 1383
                  99*******98 PP

  == domain 2  score: -0.3 bits;  conditional E-value: 1.1
       LRR_1    1 nLrhLdLsnnpl 12  
                  +L++Ld+++n +
  KOO20885.1 1593 SLTELDVRSNLI 1604
                  69*******986 PP

  == domain 3  score: -3.7 bits;  conditional E-value: 7
       LRR_1    4 hLdLsnnpl 12  
                  +LdLsn +l
  KOO20885.1 1640 ELDLSNKSL 1648
                  799*99776 PP

  == domain 4  score: 6.4 bits;  conditional E-value: 0.0068
       LRR_1    2 LrhLdLsnnpllglppnsfq 21  
                  Lr+L+L+nn +++++ ++++
  KOO20885.1 1745 LRVLNLRNNEIDDIGLSALS 1764
                  9**********888777665 PP

  == domain 5  score: -2.7 bits;  conditional E-value: 6.7
       LRR_1    2 LrhLdLsnnpllglpp 17  
                  L++L L+ n++++ + 
  KOO20885.1 1775 LERLFLNKNHIGNVGL 1790
                  899******9876655 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.0       4.5   1.1e+04      43      69 ..      77     104 ..      60     168 .. 0.58
   2 ?   10.8   0.0   0.00017      0.44       4      38 ..     812     861 ..     808     954 .. 0.63

  Alignments for each domain:
  == domain 1  score: -3.5 bits;  conditional E-value: 4.5
      AAA_22  43 v.fvtlpsstsskdllrellralglelk 69 
                 + f+++p++++s + l +l++ l + lk
  KOO20885.1  77 AeFYKVPVDSKSGQSLADLCSLLVDLLK 104
                 3455555555444444444444443333 PP

  == domain 2  score: 10.8 bits;  conditional E-value: 0.00017
      AAA_22   4 tagilvvtGesGtGKTtllrrlleqldeeakaee...............e 38 
                 ++ ++++tG++ +GKT l+ +l +    +++ ++               +
  KOO20885.1 812 SKACILLTGPPAAGKTCLMSQLIMHSLGREQKAKpartepdsarskdaiK 861
                 789****************9998876655555555777666664444443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1898 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1329  (0.0741257); expected 358.6 (0.02)
Passed bias filter:                      675  (0.0376485); expected 358.6 (0.02)
Passed Vit filter:                       119  (0.00663729); expected 17.9 (0.001)
Passed Fwd filter:                        26  (0.00145016); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 1.38u 0.33s 00:00:01.71 Elapsed: 00:00:00.50
# Mc/sec: 11412.21
//
Query:       KOO20886.1  [L=785]
Description: alanine--glyoxylate transaminase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    4.5e-69  233.1   0.0    6.3e-69  232.6   0.0    1.1  1  Aminotran_3  Aminotransferase class-III
    2.9e-14   53.6   1.8    2.9e-14   53.6   1.8    2.8  3  APH          Phosphotransferase enzyme family


Domain annotation for each model (and alignments):
>> Aminotran_3  Aminotransferase class-III
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  232.6   0.0     7e-73   6.3e-69      10     406 .]     347     750 ..     341     750 .. 0.92

  Alignments for each domain:
  == domain 1  score: 232.6 bits;  conditional E-value: 7e-73
                  CEEEEEEEBTEEEETTS-EEEESSHHHHTTTT-BT-HHHHHHHHHHHTT-S---TTTCEEHHHHHHHHHHHHHCT-..SEEEEESSHHHHHHHHHHHH CS
  Aminotran_3  10 llvitkaeGvyltdvdgkrylDlvssiavvnlGhahPkvvkavkeqaaklshvsfgaltnepalklaekllklapkgldkvflansGseAvetAlKla 107
                  ++v+ +a G++++d+ g ++lD +       +GhahP+vv+a++ qa k   +++  + +  a+ lae l + +p +ld vf++nsGseA+  A +++
   KOO20886.1 347 PVVVARATGCWVVDAAGTTLLDCYNNV--PSVGHAHPRVVQAIARQARKA-NTNL-RYLHPLAVSLAERLKASLPAHLDTVFFVNSGSEANDLAWRMS 440
                  589*********************975..568*****************9.5553.55667899********************************** PP

                  HHHHHHTSHCTT-EEEEETTT---SSHHHHHHSS--TTTTTTCTTB-TSEEEE-TTBGGGTB-HHHHHHHHHHHHHHHH...CHTCCCEEEEEE-SCE CS
  Aminotran_3 108 rkyarekkatektkiiafkgafHGrtlgalsvtgskkkyktlfgpflpevvrlkypdeevlkeneeeeaalleeleale...kkkkdevaAvivEpiq 202
                   +++   + t+ +  +   +a+HG   ++++++ +    ++  g+++++v r + pd ++ +   ++      +++a +   ++k   +a  i+  + 
   KOO20886.1 441 VAWTARARPTSTPGALCTAHAYHGISEATVALSPE---TAASAGHLPAHVERWAPPDAYRSPPSLSNPCPSVGAFSAAIarlEAKGRRLAMSILDGVM 535
                  ********************************999...888899999*********999998877666555556665555677999**********99 PP

                  TTTTSEB--CCHHHHHHHHHHHHT-EEEEE-TTTTTTTTSS.SSGGGGCTS--SEEEE-GGGGTTSS-EEEEEEHHHHTTS-TTS..B--TTTT-HHH CS
  Aminotran_3 203 gegGvvvaspeflaklrelckkhdvllivDEvqtGfGrTGk.lfAlehagvspDlmtlaKaltgGlplsavlataevmqalapgs..hgsTfgGnpla 297
                     Gv   +p+ +++l +l+++ + l  +DEvq G Gr G+ ++  e +g++pD++t++K +++G p++av++++e+++ + +++    sTfgGnp+ 
   KOO20886.1 536 QSDGVLQLEPADVQALVTLTHRAGGLWCADEVQGGHGRIGThMWSFERFGIAPDIVTMGKPMGNGHPVAAVVVRREIAEHFVKKEgvFFSTFGGNPVS 633
                  999*************************************659**************************************87777788********* PP

                  HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHCTT-TTEEEEEEETTEEEEEEBCCCETTC......HHHHHHHHHCTEE-EEETT..TEEEE--- CS
  Aminotran_3 298 cavalavleiieeekllenaqelgaalkegLeelqkkyevikevRgkGlmiaielkeeaevke......keilkkakekGvlilsaGd..nvirllpp 387
                  ca+a+avl+++e+e +l ++  +g+al+++ +++ ++ + +++vRg+Gl  +iel+ ++  k+      + + + ++  Gvl++ +G+  nv++++pp
   KOO20886.1 634 CAAAHAVLDVLEDEGVLARTVMAGEALRAQCRRATADIDCVGDVRGVGLANGIELVTDRASKRpdpsraAWVKNGLRRRGVLVGCTGPhdNVLKIRPP 731
                  ***********************************999*********************9888999996446667899******999888******** PP

                  TT--HHHHHHHHHHHHHHH CS
  Aminotran_3 388 liitdeeidelleilkkal 406
                  l +t++e+  ++ +l++al
   KOO20886.1 732 LAFTAAEVPTFVAALVAAL 750
                  ********99999988775 PP

>> APH  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.6   1.8   3.2e-18   2.9e-14      70     227 ..      59     228 ..      14     242 .. 0.75
   2 ?   -1.7   0.1      0.25   2.3e+03     131     131 ..     375     375 ..     229     425 .. 0.50
   3 ?    0.5   0.0     0.052   4.6e+02      33      65 ..     630     662 ..     603     677 .. 0.78

  Alignments for each domain:
  == domain 1  score: 53.6 bits;  conditional E-value: 3.2e-18
                 EEEEEE----EE-SS...HHHHHHHHHHHHHHHHHHCCHHCH.-STTTB-SHHCHTCCHHHHHHCHHHCCCGCCTCCHHHHHHHHHHHHHHHH--S... CS
         APH  70 lfalieyvpgrsllr...klsaaqlpellealgeflaalhqvdpaalpladflaqdlellrqlesatarllaselldlleeleeqvlaalaallpg... 162
                  + +   vpg +l+    +l++  l+e+++ ++++  al ++  ++ + ++ + +d+ +++ l     +++ +e +  ++ +++ vl+a+++++++   
  KOO20886.1  59 CYDV---VPGVTLEAtdgPLDDTLLREWGGMCARLGVALRSF--THPRATRKTMWDVQHAATLLPPLLPHVSAEKGL-RAVCAD-VLRAFEEEVRPrla 150
                 4444...55555555444888888888888888888888888..555666666666777777777755555555555.999999.99999999999999 PP

                 SS-EEEE-SS-SGGGEEEC...........TTEE....EEE---TT-EEEECCHHHHCCHHHCSCHCCCHCHHHHHHH CS
         APH 163 elptvllHgDlhpgNllvd.........pddgrv....tGviDfedaglgpplyDlavllrswtseldpeflaallra 227
                  l+++++HgDl+++N++v          +++g +    +G+iDf+d++    ++D+a++l +++ +  ++ +++llr 
  KOO20886.1 151 TLRHQVIHGDLNLNNVMVLskdgsggtmDAGGLLrrqiSGIIDFGDMSFTVLAADIATMLSALGTAHVARGAHELLRM 228
                 *******************9999999984444335555**********************667777777777766665 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 0.25
                 C CS
         APH 131 s 131
                 s
  KOO20886.1 375 S 375
                 1 PP

  == domain 3  score: 0.5 bits;  conditional E-value: 0.052
                 -HHHHHHHHHHHHHHHHTT-B--B-CTTBS-EE CS
         APH  33 aaeeirrevallrlLakagvpvPevlagdtdde 65 
                 ++ ++++ +a+l++L++ gv +  v ag+  ++
  KOO20886.1 630 NPVSCAAAHAVLDVLEDEGVLARTVMAGEALRA 662
                 6789****************5555555554444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (785 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       336  (0.0187406); expected 358.6 (0.02)
Passed bias filter:                      274  (0.0152825); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.62u 0.24s 00:00:00.86 Elapsed: 00:00:00.43
# Mc/sec: 5506.82
//
Query:       KOO20887.1  [L=217]
Description: hypothetical protein Ctob_000920 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.1e-10   41.2   0.5    2.8e-10   39.9   0.3    1.8  2  KH_1        KH domain
  ------ inclusion threshold ------
        0.1   13.0   0.0       0.15   12.4   0.0    1.3  1  Secretin_N  Bacterial type II/III secretion system short doma


Domain annotation for each model (and alignments):
>> KH_1  KH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.0      0.42   3.7e+03      43      56 ..      18      31 ..       7      33 .. 0.69
   2 !   39.9   0.3   3.1e-14   2.8e-10       5      64 ..      34      87 ..      29      88 .. 0.89

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 0.42
                .T.-EEEEEESHHH CS
        KH_1 43 sderevtisGspea 56
                + e+e++i G +e 
  KOO20887.1 18 EREEELRIHGAAEH 31
                45788899886665 PP

  == domain 2  score: 39.9 bits;  conditional E-value: 3.1e-14
                EEGGGHHHHHHTGGGHHHHHHHHHHT-EEEEESSTT...T.-EEEEEESHHHHHHHHHHH CS
        KH_1  5 lvPsslvgriIGkgGsnIkeIreetgakIkvpksedegsderevtisGspeavekAkeli 64
                +v+ +l++ i+G+ G+n+k++++++ga+++++ +     + + v+++G++ +vekA++++
  KOO20887.1 34 PVNPRLIPVIVGRAGANVKKMQDDSGASVVID-R-----TKNCVVVQGTKRQVEKAVAML 87
                79999*************************87.4.....4579*****9999******97 PP

>> Secretin_N  Bacterial type II/III secretion system short domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   1.7e-05      0.15      33      74 ..      47      88 ..       1      90 [. 0.73

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 1.7e-05
                ......SSTT-TTSEEEEETTTTEEEEEECHHHHHHHHHHHH CS
  Secretin_N 33 gassqsgallgkggrvvadprtNsllvrgspervarirqlik 74
                ++++ ++  +++g +vv d   N ++v+g++++v+++  +++
  KOO20887.1 47 AGANVKKMQDDSGASVVIDRTKNCVVVQGTKRQVEKAVAMLD 88
                45566677778888*********************9987765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (217 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       351  (0.0195772); expected 358.6 (0.02)
Passed bias filter:                      311  (0.0173462); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.40u 0.25s 00:00:00.65 Elapsed: 00:00:00.40
# Mc/sec: 1632.91
//
Query:       KOO20888.1  [L=288]
Description: 60s ribosomal protein l5-a [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.1e-82  275.9   0.2    1.7e-82  275.2   0.2    1.3  1  Ribosomal_L5e    Ribosomal large subunit proteins 60S L5, and
    4.3e-31  107.7   5.3    9.3e-31  106.6   5.3    1.6  1  Ribosomal_L18_c  Ribosomal L18 C-terminal region
  ------ inclusion threshold ------
      0.046   14.1   0.0      0.099   13.0   0.0    1.5  1  Ribosomal_L18p   Ribosomal L18 of archaea, bacteria, mitoch. 


Domain annotation for each model (and alignments):
>> Ribosomal_L5e  Ribosomal large subunit proteins 60S L5, and 50S L18
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  275.2   0.2   2.9e-86   1.7e-82       1     163 []      14     175 ..      14     175 .. 0.99

  Alignments for each domain:
  == domain 1  score: 275.2 bits;  conditional E-value: 2.9e-86
  Ribosomal_L5e   1 krfqvkfrrrregktdYyarkrliiqdknkyntpkyRlvVrvtnkdiicqiayakiegdkvlaaayskelpkygvkvgltnyaaaYatglllarrl 96 
                    krfqvk+rrrregktdY+ar+rl+i dknky + kyRl Vr+t kdiicq+++ ki gd++++aay++elpk+g++vgltnyaaaYatgll+arrl
     KOO20888.1  14 KRFQVKYRRRREGKTDYQARRRLVIMDKNKYGSTKYRLCVRFTSKDIICQVIQPKIVGDHTVCAAYAHELPKFGIEVGLTNYAAAYATGLLCARRL 109
                    8*********************************************************************************************** PP

  Ribosomal_L5e  97 lkklgldkiyegqeevtgeeynveeideekrafkaiLdvGLartttgakvfgalkgavdgglsiphs 163
                    lkk+g+d+ yeg++e++ge+y ve+ +++ r+f+++LdvGL rtttg++vfgalkgavdggl+iphs
     KOO20888.1 110 LKKMGMDEAYEGKAEPDGEMYLVEQ-EGDARPFTCVLDVGLVRTTTGNRVFGALKGAVDGGLNIPHS 175
                    ***********************98.79**************************************7 PP

>> Ribosomal_L18_c  Ribosomal L18 C-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  106.6   5.3   1.6e-34   9.3e-31       2      95 .]     192     283 ..     191     283 .. 0.95

  Alignments for each domain:
  == domain 1  score: 106.6 bits;  conditional E-value: 1.6e-34
  Ribosomal_L18_c   2 evlrkrIfgkhvaeYmeeLkeedeekykkqFskyikkgieaddleelykkahaaIredpvkkekkekkevkkeskkykkkkltleqrkarvkqK 95 
                      e+++k+Ifg+hv+eYme L+eed+e+y++qF+kyi+k++e+d+le++yk+ah++Iredp+  +k ek ++++ +   ++++ tle+rka+v++K
       KOO20888.1 192 ETHKKYIFGGHVQEYMELLEEEDPERYQSQFAKYIEKELESDTLEDMYKSAHEKIREDPEY-TKTEKGDYSD-KDFGRTPRRTLEERKAAVAAK 283
                      89**********************************************************5.7788888888.5899**************998 PP

>> Ribosomal_L18p  Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.0   1.7e-05     0.099       3      84 ..      27     112 ..      25     120 .. 0.79

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 1.7e-05
                     CCHHHCHHHHHHTTT--TTSSS-EEEEEE-SS-EEEEEE-T..TT--EEEEECS-SC.CCT.S-SSSCHHHHHHHHHHHHHHHCHH CS
  Ribosomal_L18p   3 kkearkrRhkRirkklsgtaerprlvvfrsnrhiyaQvidd..vkgktlasastlek.elk.lkstknkeaakkvgeliAerakek 84 
                     k++ ++rR++ i +k +  +++ rl+v  + + i  Qvi+   v ++t+ +a + e  ++       n +aa + g l A+r+++k
      KOO20888.1  27 KTDYQARRRLVIMDKNKYGSTKYRLCVRFTSKDIICQVIQPkiVGDHTVCAAYAHELpKFGiEVGLTNYAAAYATGLLCARRLLKK 112
                     677789999999999996666******************97335789999888777424544455678888889999999998776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (288 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       738  (0.0411624); expected 358.6 (0.02)
Passed bias filter:                      467  (0.0260472); expected 358.6 (0.02)
Passed Vit filter:                        52  (0.00290033); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.46u 0.23s 00:00:00.69 Elapsed: 00:00:00.40
# Mc/sec: 2152.64
//
Query:       KOO20889.1  [L=466]
Description: hypothetical protein Ctob_000922 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.071   13.2   1.1       0.22   11.6   0.0    2.3  2  C2-C2_1     First C2 domain of RPGR-interacting protein 1
      0.097   13.0   0.7      0.097   13.0   0.7    2.3  2  TSC22       TSC-22/dip/bun family
       0.32   10.1  17.0       0.14   11.3  14.5    1.6  2  PLU-1       PLU-1-like protein


Domain annotation for each model (and alignments):
>> C2-C2_1  First C2 domain of RPGR-interacting protein 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   3.8e-05      0.22      92     141 .]      96     151 ..      92     151 .. 0.85
   2 ?   -1.3   0.3      0.35   2.1e+03      80     122 ..     231     277 ..     214     303 .. 0.60

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 3.8e-05
     C2-C2_1  92 sdfktlaaaqlslkellek..rsekiegsvkltgvege....aiGtleywlrlrvp 141
                 ++ ++++aa l+l++++e   +s+++e++++l+  ++     a+Gt+++++rl++p
  KOO20889.1  96 TKTDVVGAAVLALQRVIEPmvQSGQVEQTLTLSPPTQSgsgaAVGTIKLKMRLEQP 151
                 567889***********999889*********8863333566***********998 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 0.35
     C2-C2_1  80 eslkleLhqal.gsdfktlaaaqlslkell...ekrsekiegsvklt 122
                 ++l  eLh  +  +d + l   + ++ +l     ++++   + +kl+
  KOO20889.1 231 KQLEAELHALRtHVDERELEQLNAQVAQLSaalGTQQQLSASYAKLK 277
                 45566666655555544444444444433311133444444444444 PP

>> TSC22  TSC-22/dip/bun family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.7   1.6e-05     0.097      21      56 ..     221     256 ..     220     257 .. 0.94
   2 ?   -2.4   0.4         1   6.2e+03      19      41 ..     276     298 ..     274     309 .. 0.72

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 1.6e-05
       TSC22  21 ekIkeLeernseleeENslLkalaspeqleqlsakl 56 
                 e++ eL + n++le E + L++++ +  leql+a++
  KOO20889.1 221 EEVMELRAVNKQLEAELHALRTHVDERELEQLNAQV 256
                 6789*****************************986 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 1
       TSC22  19 LkekIkeLeernseleeENslLk 41 
                 Lke  +e  ++ ++l+ E + L 
  KOO20889.1 276 LKEAHTEQAQELQRLQDEGKRLH 298
                 77777888888888888877665 PP

>> PLU-1  PLU-1-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3  14.5   2.4e-05      0.14     183     311 ..     199     329 ..     187     354 .. 0.73
   2 ?   -1.8   1.4      0.22   1.3e+03     259     297 ..     355     402 ..     306     423 .. 0.45

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 2.4e-05
       PLU-1 183 eevkeLieeGeelaippek.eellaelqelleaaekweekakelLeareklsleeLeallneaqeipvslpslaaleeilkkarewq.rkveelikssq 279
                 +e+++L+ + + +++   +  +  +e+ el +  +++e++++ l   r +++  eLe+l  +++++ ++l + ++l++ + k++e++ ++++el +++q
  KOO20889.1 199 QELVQLLMADVANKT--AStARTGEEVMELRAVNKQLEAELHAL---RTHVDERELEQLNAQVAQLSAALGTQQQLSASYAKLKEAHtEQAQEL-QRLQ 291
                 566666663333443..33377788999999999*********9...9***************************************8899999.9999 PP

       PLU-1 280 daaer.....ptlseleellkkges.lpvkleeleqLe 311
                 d+++r      t+++ e +++++e  +   l+++++L+
  KOO20889.1 292 DEGKRlhkyrTTAKQQELIIQRLEAlMAAALKDAKRLK 329
                 77777766665555555555555554444444444443 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 0.22
       PLU-1 259 eilkkarewqrkveelikssq..daaer.......ptlseleellkkg 297
                 ++ ++ re++ ++++ +k++   d++e        ++++e+ +ll ++
  KOO20889.1 355 DAHERERELTMQLQDAQKKLAgrDEDEMggavlggAKAEEVARLLMRA 402
                 333344444444444444443432222244455555555555555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (466 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1967  (0.109711); expected 358.6 (0.02)
Passed bias filter:                      558  (0.0311228); expected 358.6 (0.02)
Passed Vit filter:                        82  (0.0045736); expected 17.9 (0.001)
Passed Fwd filter:                        34  (0.00189637); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.91u 0.35s 00:00:01.26 Elapsed: 00:00:00.48
# Mc/sec: 2925.39
//
Query:       KOO20890.1  [L=372]
Description: actin-related protein c1a [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.4e-12   47.7   0.2      0.085   13.2   0.0    5.3  5  ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain
    4.9e-12   46.2  13.8    0.00044   21.0   0.2    6.9  6  WD40         WD domain, G-beta repeat
    5.4e-05   23.2   1.4       0.14   12.1   1.2    4.4  4  eIF2A        Eukaryotic translation initiation factor eIF2A
     0.0026   16.8   0.9        6.5    5.6   0.0    4.1  5  Ge1_WD40     WD40 region of Ge1, enhancer of mRNA-decapping p
  ------ inclusion threshold ------
      0.011   14.5   3.1       0.24   10.1   0.7    2.8  2  DPPIV_N      Dipeptidyl peptidase IV (DPP IV) N-terminal regi
      0.084   10.9   0.6       0.29    9.1   0.1    2.0  2  IKI3         IKI3 family


Domain annotation for each model (and alignments):
>> ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.6   0.0     0.013        40      36      67 ..       6      37 ..       2      41 .. 0.87
   2 !   10.4   0.1   0.00021      0.62       2      61 ..      15      78 ..      14      90 .. 0.80
   3 ?    4.7   0.0     0.013        38      41      69 ..     103     131 ..      98     140 .. 0.84
   4 !   12.2   0.0   5.8e-05      0.17      36      71 ..     143     178 ..     133     206 .. 0.86
   5 !   13.2   0.0   2.8e-05     0.085      40      72 ..     206     238 ..     194     265 .. 0.90

  Alignments for each domain:
  == domain 1  score: 4.6 bits;  conditional E-value: 0.013
  ANAPC4_WD40 36 kedsevrsLaWkpdgklLavaysdgevrllda 67
                   + ++++ aW+ d ++ av  + + v+++ +
   KOO20890.1  6 RVEDKITCHAWNADRTMVAVCPNSNVVNIYRV 37
                 567899*******************9999976 PP

  == domain 2  score: 10.4 bits;  conditional E-value: 0.00021
  ANAPC4_WD40  2 swcptmDLiAlatedgellvfRlng......qrvwtleedkedsevrsLaWkpdgklLavaysdge 61
                 +w+  + ++A+  +++ ++++R+        +rv tl  +++d  v+++aW p+ + +    +d +
   KOO20890.1 15 AWNADRTMVAVCPNSNVVNIYRVPAsaddpwERVATL--AEHDALVTDVAWAPKTNRILTTSQDRN 78
                 6999999999999*********954444444999999..8*************9888777766655 PP

  == domain 3  score: 4.7 bits;  conditional E-value: 0.013
  ANAPC4_WD40  41 vrsLaWkpdgklLavaysdgevrlldaes 69 
                   +s++W+ d++ +av+    +v ++  e 
   KOO20890.1 103 ATSVNWSADEQKFAVGSGSKTVPICYFEA 131
                  6899***************9999986654 PP

  == domain 4  score: 12.2 bits;  conditional E-value: 5.8e-05
  ANAPC4_WD40  36 kedsevrsLaWkpdgklLavaysdgevrlldaesgk 71 
                  ++ s+++++aW+p+  + a a+ d ++r+++a+ + 
   KOO20890.1 143 GHRSTISAVAWHPSTPVVATACTDFKCRVYSAYLKS 178
                  67899**************************99654 PP

  == domain 5  score: 13.2 bits;  conditional E-value: 2.8e-05
  ANAPC4_WD40  40 evrsLaWkpdgklLavaysdgevrlldaesgkv 72 
                   vr++aW+p g  +a++ ++++v+++d+ sg +
   KOO20890.1 206 WVRGVAWSPAGDTFAFSSHNSTVSFVDVVSGST 238
                  69***************************9986 PP

>> WD40  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.5   0.0      0.22   6.6e+02      13      28 ..      11      26 ..       4      36 .. 0.82
   2 !   16.2   0.0     5e-06     0.015       3      38 .]      47      83 ..      45      83 .. 0.89
   3 ?    1.0   0.0       0.3   8.9e+02      14      33 ..     104     123 ..      96     124 .. 0.83
   4 !   21.0   0.2   1.5e-07   0.00044       5      37 ..     139     172 ..     135     173 .. 0.90
   5 !    6.2   1.2    0.0072        21      12      35 ..     206     229 ..     200     271 .. 0.86
   6 ?    0.7   0.0      0.39   1.2e+03      10      37 ..     324     357 ..     318     358 .. 0.60

  Alignments for each domain:
  == domain 1  score: 1.5 bits;  conditional E-value: 0.22
                EEEEEEETTSSEEEEE CS
        WD40 13 vtslafspdgawlasG 28
                +t+ a++ d +++a +
  KOO20890.1 11 ITCHAWNADRTMVAVC 26
                9********9999876 PP

  == domain 2  score: 16.2 bits;  conditional E-value: 5e-06
                EEEEEESSSS.EEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40  3 clrtltGHss.vtslafspdgawlasGsdDgtvriWd 38
                 + tl  H+  vt++a+ p  + +++ s D++ ++W+
  KOO20890.1 47 RVATLAEHDAlVTDVAWAPKTNRILTTSQDRNAYVWN 83
                5778889*557*************************8 PP

  == domain 3  score: 1.0 bits;  conditional E-value: 0.3
                 EEEEEETTSSEEEEEETTSE CS
        WD40  14 tslafspdgawlasGsdDgt 33 
                 ts+ +s d + +a Gs  +t
  KOO20890.1 104 TSVNWSADEQKFAVGSGSKT 123
                 7999*******998875555 PP

  == domain 4  score: 21.0 bits;  conditional E-value: 1.5e-07
                 EEEESS.SSEEEEEEETTSSEEEEEETTSEEEEE CS
        WD40   5 rtltGH.ssvtslafspdgawlasGsdDgtvriW 37 
                 + l+GH s ++++a++p+ + +a+++ D ++r++
  KOO20890.1 139 KMLKGHrSTISAVAWHPSTPVVATACTDFKCRVY 172
                 6799**999**************9888*****98 PP

  == domain 5  score: 6.2 bits;  conditional E-value: 0.0072
                 SEEEEEEETTSSEEE.EEETTSEEE CS
        WD40  12 svtslafspdgawla.sGsdDgtvr 35 
                 +v+++a+sp g+ +a s++ + tv 
  KOO20890.1 206 WVRGVAWSPAGDTFAfSSH-NSTVS 229
                 5999*********875666.77775 PP

  == domain 6  score: 0.7 bits;  conditional E-value: 0.39
                 S.SSEEEEE.....EETTSSEEEEEETTSEEEEE CS
        WD40  10 H.ssvtsla.....fspdgawlasGsdDgtvriW 37 
                 H + v++l+     f    a ++++  Dg++ +W
  KOO20890.1 324 HqNKVCGLQlfgssFAGQPAEFSTSALDGKIAFW 357
                 6555777744333333333336666679999999 PP

>> eIF2A  Eukaryotic translation initiation factor eIF2A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.0       0.8   2.4e+03      59      77 ..       8      26 ..       2      40 .. 0.73
   2 !   12.1   1.2   4.5e-05      0.14      60     171 ..      56     173 ..      28     186 .. 0.58
   3 !    4.7   0.0    0.0079        24      52     115 ..     197     260 ..     190     264 .. 0.77
   4 ?   -3.5   0.0       2.7     8e+03     123     136 ..     350     363 ..     348     368 .. 0.76

  Alignments for each domain:
  == domain 1  score: -1.8 bits;  conditional E-value: 0.8
                SS.EEEEEE-TTSS-EEEE CS
       eIF2A 59 egpihdvaWspkskefavi 77
                e +i + aW+ +++  av+
  KOO20890.1  8 EDKITCHAWNADRTMVAVC 26
                5568888888888888887 PP

  == domain 2  score: 12.1 bits;  conditional E-value: 4.5e-05
                 S.EEEEEE-TTSS-EEEEESSSSCEEEEEECS.......CEEEEEEEEES--EEEE-TTSSEEEEE.-TTSSS-EEEEEETT...TTEEEEEEE-TT-- CS
       eIF2A  60 gpihdvaWspkskefaviyGkmpakvslfdlk.......vkviskleeqkrNtiffspkgklvlla.GfgnlaGeleiwdvk...kkkkiakaeaanat 147
                   + dvaW pk ++++     +++++++++l+       + vi ++ ++++ ++ +s+ ++ ++++ G + +   +  ++ +    ++k+ k + ++ +
  KOO20890.1  56 ALVTDVAWAPKTNRILTT--SQDRNAYVWNLEangewkpMLVILRI-AAAATSVNWSADEQKFAVGsGSKTV--PICYFEAEnnfWVSKMLKGHRSTIS 149
                 347788888888776554..45555555555333454433344444.3445567777776666654133333..4444544432246677777777777 PP

                 EEEE-TTSSEEEEEE-TTT-SSS- CS
       eIF2A 148 lvewspdgryvlTattaprlrvdn 171
                  v w+p+   v+Ta t  + rv  
  KOO20890.1 150 AVAWHPSTPVVATACTDFKCRVYS 173
                 888888888888888888888755 PP

  == domain 3  score: 4.7 bits;  conditional E-value: 0.0079
                 EECCEESSS.EEEEEE-TTSS-EEEEESSSSCEEEEEECS..CEEEEEEEEES--EEEE-TTSSEE CS
       eIF2A  52 evvelkkegpihdvaWspkskefaviyGkmpakvslfdlk..vkviskleeqkrNtiffspkgklv 115
                 + +e++  g +  vaWsp ++ fa      +++vs+ d+     ++++++e +   i+f p g lv
  KOO20890.1 197 QFLEIESLGWVRGVAWSPAGDTFAFS--SHNSTVSFVDVVsgSTQTVRMSELPLTNIIFLPDGSLV 260
                 5678899999*************975..57778888888444566677777777788888888876 PP

  == domain 4  score: -3.5 bits;  conditional E-value: 2.7
                 SS-EEEEEETTTTE CS
       eIF2A 123 laGeleiwdvkkkk 136
                 l G++++w + +++
  KOO20890.1 350 LDGKIAFWSRVEIT 363
                 7899***9988665 PP

>> Ge1_WD40  WD40 region of Ge1, enhancer of mRNA-decapping protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.1   0.0      0.05   1.5e+02     183     219 ..       4      40 ..       1      57 [. 0.83
   2 ?   -0.9   0.0      0.21   6.3e+02      64     110 ..      54      99 ..      43     112 .. 0.66
   3 !    5.6   0.0    0.0022       6.5     186     222 ..     144     180 ..     128     190 .. 0.83
   4 !    3.9   0.0    0.0074        22     180     218 ..     197     235 ..     189     243 .. 0.85
   5 ?   -0.4   0.1      0.15   4.4e+02     178     215 ..     319     358 ..     280     365 .. 0.62

  Alignments for each domain:
  == domain 1  score: 1.1 bits;  conditional E-value: 0.05
    Ge1_WD40 183 kieehsliveaafspdGtalatasedGevkffqvyle 219
                 + + + +i++ a+ +d t +a++ +  +v  ++v  +
  KOO20890.1   4 ECRVEDKITCHAWNADRTMVAVCPNSNVVNIYRVPAS 40 
                 556667899********************99999665 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 0.21
    Ge1_WD40  64 lkgevldlafahvsskillavdekgslfvykveeveskllvslllkv 110
                   + v+d+a+a   ++il +  +  + +v+++e+  +   + ++l++
  KOO20890.1  54 HDALVTDVAWAPKTNRIL-TTSQDRNAYVWNLEANGEWKPMLVILRI 99 
                 556688888887666554.4566677888888776655555555555 PP

  == domain 3  score: 5.6 bits;  conditional E-value: 0.0022
    Ge1_WD40 186 ehsliveaafspdGtalatasedGevkffqvyledee 222
                 + s+i+  a+ p   ++ata++d + + +  yl+  +
  KOO20890.1 144 HRSTISAVAWHPSTPVVATACTDFKCRVYSAYLKSVD 180
                 34799999************************98765 PP

  == domain 4  score: 3.9 bits;  conditional E-value: 0.0074
    Ge1_WD40 180 gllkieehsliveaafspdGtalatasedGevkffqvyl 218
                  +l+ie+   +   a+sp G + a +s++ +v f  v  
  KOO20890.1 197 QFLEIESLGWVRGVAWSPAGDTFAFSSHNSTVSFVDVVS 235
                 578999999999**********************99865 PP

  == domain 5  score: -0.4 bits;  conditional E-value: 0.15
    Ge1_WD40 178 eegllkieehs..liveaafspdGtalatasedGevkffq 215
                 + g ++ ++    ++  ++f+   +  +t++ dG++ f+ 
  KOO20890.1 319 TLGSIHQNKVCglQLFGSSFAGQPAEFSTSALDGKIAFWS 358
                 233333333322348889999999999***********94 PP

>> DPPIV_N  Dipeptidyl peptidase IV (DPP IV) N-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.7   8.1e-05      0.24     173     213 ..      45      85 ..      24     146 .. 0.74
   2 ?    3.5   0.0    0.0083        25      98     123 ..     202     227 ..     194     239 .. 0.84

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 8.1e-05
                 CS-HHHHCTTCEEEEEEEECTTSCCEEEEEEETTSTEEEEE CS
     DPPIV_N 173 vqlpdslsekdeyitrvkWtsdeksllvqwlnRsqnrlkvv 213
                 ++ +  l+e d ++t+v+W+++++++l++ ++R+    ++ 
  KOO20890.1  45 WERVATLAEHDALVTDVAWAPKTNRILTTSQDRNAYVWNLE 85 
                 5555668999***********************98877665 PP

  == domain 2  score: 3.5 bits;  conditional E-value: 0.0083
                 HTSSSSBEEEE-TTSSEEEEEEEECT CS
     DPPIV_N  98 EvlgsnsavwWspdgsrlaylrfdes 123
                 E lg   +v+Wsp g+  a+ + +++
  KOO20890.1 202 ESLGWVRGVAWSPAGDTFAFSSHNST 227
                 66777889999999999999988865 PP

>> IKI3  IKI3 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.1   0.1   9.6e-05      0.29     255     374 ..      55     170 ..      45     186 .. 0.75
   2 ?   -2.5   0.0       0.3   8.9e+02     123     144 ..     207     228 ..     205     232 .. 0.83

  Alignments for each domain:
  == domain 1  score: 9.1 bits;  conditional E-value: 9.6e-05
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXXXXXXXXXXX...XXXXXXXXXXXXXXXXXXXXXX.. CS
        IKI3 255 dgleeaLaWrPsGsliAstqrkkdksldvvfFErNGLrhgefslrlekeeeevqsLaWsadSevLavrledr...vqlwtisNyhWYLKqelrysaseg 350
                 d l   +aW P+ + i +t ++ +    v   E NG  +  +++   +  +  +s++Wsad +  av    +   +  +  +N++W  K  l+  ++++
  KOO20890.1  55 DALVTDVAWAPKTNRILTTSQDRNA--YVWNLEANGEWKPMLVIL--RIAAAATSVNWSADEQKFAVGSGSKtvpICYFEAENNFWVSK-MLKG-HRST 147
                 56677899******99999886666..89999****999999884..799999**************5533335688899999999655.5664.4555 PP

                 .XXXXXXXXXXXXXXXXXX.XXXX CS
        IKI3 351 veevkWdpekpltLlvltesgkie 374
                  + v W+p+ p    + t   k++
  KOO20890.1 148 ISAVAWHPSTPVVATACTD-FKCR 170
                 566******9985555544.4444 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 0.3
                 XXXXXXXXXXXXXXXXXXXXXX CS
        IKI3 123 ieaaawspdeellalvtgeekv 144
                 ++ +awsp ++++a+ +++ +v
  KOO20890.1 207 VRGVAWSPAGDTFAFSSHNSTV 228
                 5678999999999999988877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (372 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       390  (0.0217525); expected 358.6 (0.02)
Passed bias filter:                      319  (0.0177924); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.52u 0.29s 00:00:00.81 Elapsed: 00:00:00.44
# Mc/sec: 2521.37
//
Query:       KOO20891.1  [L=693]
Description: hypothetical protein Ctob_000915 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
       0.42   10.4   4.5         13    5.7   0.4    2.8  2  Sigma70_r2  Sigma-70 region 2


Domain annotation for each model (and alignments):
>> Sigma70_r2  Sigma-70 region 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.5   0.3   0.00083        15       4      45 ..     272     313 ..     270     318 .. 0.85
   2 ?    5.7   0.4   0.00071        13       3      42 ..     409     448 ..     407     454 .. 0.87

  Alignments for each domain:
  == domain 1  score: 5.5 bits;  conditional E-value: 0.00083
                 HHHHHHHHHHHHCT-THHHHHHHHHHHHHHHHHHGGGTSTTT CS
  Sigma70_r2   4 rylplvkrlarrllgsgadaeDlvQeaflrlwraverfdper 45 
                 ++  ++  +  +l + +a+  D vQ ++ r+  a+e+ +++ 
  KOO20891.1 272 AHMAQLATVQAQLEQAQAQLSDTVQLGLARAVAAAETMRDDS 313
                 78888888889999999*******************999654 PP

  == domain 2  score: 5.7 bits;  conditional E-value: 0.00071
                 HHHHHHHHHHHHHCT-THHHHHHHHHHHHHHHHHHGGGTS CS
  Sigma70_r2   3 erylplvkrlarrllgsgadaeDlvQeaflrlwraverfd 42 
                 ++++ + k l++r+  +g +ae l+Qe   ++++a + ++
  KOO20891.1 409 RQHKEMQKTLLQRIEAHGVQAEQLAQESSTAALQAQAALR 448
                 678888899*******************999999977666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (693 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2391  (0.133359); expected 358.6 (0.02)
Passed bias filter:                      592  (0.0330191); expected 358.6 (0.02)
Passed Vit filter:                       113  (0.00630264); expected 17.9 (0.001)
Passed Fwd filter:                        37  (0.0020637); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 1.23u 0.35s 00:00:01.58 Elapsed: 00:00:00.51
# Mc/sec: 4065.70
//
Query:       KOO20892.1  [L=320]
Description: hypothetical protein Ctob_000924 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.031   14.1   5.8       0.91    9.5   0.4    3.1  2  IQ        IQ calmodulin-binding motif


Domain annotation for each model (and alignments):
>> IQ  IQ calmodulin-binding motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.7   0.8   0.00081        15       7      18 ..     258     269 ..     257     269 .. 0.93
   2 ?    9.5   0.4   5.1e-05      0.91       3      18 ..     292     307 ..     292     310 .. 0.91

  Alignments for each domain:
  == domain 1  score: 5.7 bits;  conditional E-value: 0.00081
                 HHHHHHHHHHHH CS
          IQ   7 IQaawRGylaRk 18 
                  Q+a+R  laRk
  KOO20892.1 258 VQRAYRNRLARK 269
                 6**********8 PP

  == domain 2  score: 9.5 bits;  conditional E-value: 5.1e-05
                 HHHHHHHHHHHHHHHH CS
          IQ   3 aaikIQaawRGylaRk 18 
                 a+ik Qa  RG+  R 
  KOO20892.1 292 AVIKVQAIARGFFLRT 307
                 89**********9996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (320 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       746  (0.0416086); expected 358.6 (0.02)
Passed bias filter:                      468  (0.026103); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.27s 00:00:00.75 Elapsed: 00:00:00.44
# Mc/sec: 2207.57
//
Query:       KOO20893.1  [L=685]
Description: interferon-induced protein 44-like protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    6.6e-18   65.3   0.2    1.5e-17   64.1   0.2    1.6  1  TLD           TLD
    0.00018   21.9   0.0    0.00045   20.6   0.0    1.8  1  AAA_16        AAA ATPase domain
    0.00026   21.1   0.0    0.00062   19.8   0.0    1.7  1  MMR_HSR1      50S ribosome-binding GTPase
     0.0036   16.4   0.0     0.0061   15.7   0.0    1.2  1  IIGP          Interferon-inducible GTPase (IIGP)
     0.0091   15.9   0.0       0.28   11.1   0.0    2.3  2  RsgA_GTPase   RsgA GTPase
  ------ inclusion threshold ------
      0.013   14.9   0.0      0.026   13.9   0.0    1.4  1  FtsK_SpoIIIE  FtsK/SpoIIIE family
      0.016   15.4   0.0       0.09   13.0   0.0    2.1  2  Roc           Ras of Complex, Roc, domain of DAPkinase
       0.02   14.6   0.0      0.034   13.9   0.0    1.3  1  AAA_24        AAA domain
      0.024   13.8   0.0      0.038   13.1   0.0    1.2  1  DUF815        Protein of unknown function (DUF815)
       0.04   13.7   0.1        2.2    8.0   0.0    2.6  3  ATP_bind_1    Conserved hypothetical ATP binding protein
      0.061   12.9   0.1        8.9    5.8   0.1    2.3  2  GTP_EFTU      Elongation factor Tu GTP binding domain
      0.061   12.1   0.0       0.09   11.6   0.0    1.1  1  PPV_E1_C      Papillomavirus helicase
       0.11   12.0   0.0       0.19   11.2   0.0    1.2  1  AAA_7         P-loop containing dynein motor region
       0.12   12.2   0.0       0.23   11.4   0.0    1.4  1  NTPase_1      NTPase
       0.13   12.7   0.0       0.35   11.3   0.0    1.7  1  RNA_helicase  RNA helicase


Domain annotation for each model (and alignments):
>> TLD  TLD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.1   0.2   1.2e-20   1.5e-17       1     122 [.      32     157 ..      32     181 .. 0.90

  Alignments for each domain:
  == domain 1  score: 64.1 bits;  conditional E-value: 1.2e-20
         TLD   1 llyssskdgsslstllekienkgptlllikdekkyifGaflsqpwkssnkkfygdsesflfsl...spkfkvykstgknkaylntssdglgfGggqpkf 96 
                 ll++++ dg++   +++k++ kgpt+++i+  ++ ++G++++ +w ++n +f ++  +flf l   +++   yk+t++n++++   s+g++fGgg+++ 
  KOO20893.1  32 LLFQTDVDGFNPAVFHQKCNTKGPTVTVIRLADQTVCGGYTPFQWGQNNGQFSNELGTFLFRLkyrNQQPAAYKATPNNNFVYDDGSYGPTFGGGNSHD 130
                 79*******************************9***********999999*************999999**********99999999*******9555 PP

         TLD  97 sLwidsslekgtsrhs.etfengllsg 122
                  +  + +  +g+ ++s  t+ +++ +g
  KOO20893.1 131 LIAFNCNTANGYHSPScYTYPQDPQTG 157
                 566788999999996668888777764 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.6   0.0   3.8e-07   0.00045       9      52 ..     221     269 ..     218     401 .. 0.85

  Alignments for each domain:
  == domain 1  score: 20.6 bits;  conditional E-value: 3.8e-07
      AAA_16   9 leqLlsalervrsgrp..elvllsGesGvGKsslvrellralekd...g 52 
                 l+ L++ l++  + +p  +++l+ G+ G+GKss +r+l++ +e+d   g
  KOO20893.1 221 LSSLRDKLQASVAKQPspPNILIFGPVGTGKSSFIRSLMQVVEDDvdaG 269
                 567888888666666666*********************7666665443 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.8   0.0   5.2e-07   0.00062       2     114 .]     241     403 ..     240     403 .. 0.59

  Alignments for each domain:
  == domain 1  score: 19.8 bits;  conditional E-value: 5.2e-07
                 EEEEESTTSSHHHHHHHHHT..........STEEESSSTTSSSSEEEEEEE..ETT.EEEEEEECGGC..........SSHHHHHHH............ CS
    MMR_HSR1   2 vaivGrpNvGKStLinaltg..........ekaivsdkpgtTrdinegrvk..lkg.keielvDtpGl..........iegaseekg............ 65 
                 ++i+G   +GKS++i++l++          +++  s +  +T+  + + ++  + g + + l+Dt+G+                  g            
  KOO20893.1 241 ILIFGPVGTGKSSFIRSLMQvveddvdaggNVSTGSGEGSVTKCLKVYPLTssT-GaPVCALWDTAGIevgsksklyqD-------Gamakllagcfpr 331
                 89*****************65555554332345556677788888888877533.34779*******544444444440.......1334444444444 PP

                 ....................HHHHHHHHHCTSEEEEEEETT...TTCSHHHHHHHHHHHHHTTSEEEEEEES CS
    MMR_HSR1  66 ....................lgkaflaleeadlillvvdas...eeklkpldeeleelleeakkplilvlnk 114
                                     ++ +  + ++++ +++++ a+   e++ ++  +++  + +++++p ilv++k
  KOO20893.1 332 nteladdkgsptrlddrtpgFRPDPTEDQRVHGVVMCIAATdisEDEATKAIQDFTHVVRDRDIPHILVITK 403
                 444444444444444444445555555666777777775444434445555566666666678888888776 PP

>> IIGP  Interferon-inducible GTPase (IIGP)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.0   5.1e-06    0.0061      34      96 ..     237     307 ..     218     316 .. 0.72

  Alignments for each domain:
  == domain 1  score: 15.7 bits;  conditional E-value: 5.1e-06
                 --EEEEEEESTTSSHHHHHHHHTT--TTSTTS...--SSC..HSHHTS-EEE...E-SS-TTEEEEEE--G CS
        IIGP  34 aklkiavtGdsGnGkssFinaLRliGheeeds...AptGv..vettkkrtpY...ssskfPnvvlWDLPGl 96 
                 ++ +i + G  G+GkssFi +L  + +++ d+     tG     +tk+ + Y   ss+  P   lWD  G+
  KOO20893.1 237 SPPNILIFGPVGTGKSSFIRSLMQVVEDDVDAggnVSTGSgeGSVTKCLKVYpltSSTGAPVCALWDTAGI 307
                 456899****************99888776542223455411568999999943335679*******9998 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.1   0.0   0.00024      0.28     101     140 ..     240     282 ..     216     309 .. 0.69
   2 ?    2.3   0.0      0.12   1.4e+02      28      60 ..     376     408 ..     349     413 .. 0.76

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00024
                  EEEEECSTTSSHHHHHHHHCT...T-----S------------ CS
  RsgA_GTPase 101 tsvlvGqSGvGKStLinallp...elelktgevseklgrGkhT 140
                   +++ G+ G GKS++i +l++   ++  + g+vs+ +g+G  T
   KOO20893.1 240 NILIFGPVGTGKSSFIRSLMQvveDDVDAGGNVSTGSGEGSVT 282
                  56899**************994422344557899999999765 PP

  == domain 2  score: 2.3 bits;  conditional E-value: 0.12
                  TT--HHHHHHHHHHHHHTT-EEEEEEE-GGG-- CS
  RsgA_GTPase  28 pelslnlldrfLvlaeekgiepvivlnKiDlle 60 
                  ++  ++ ++ f  ++ +++i+ ++v++K+D ++
   KOO20893.1 376 EDEATKAIQDFTHVVRDRDIPHILVITKADEYD 408
                  444566777788899999***********9775 PP

>> FtsK_SpoIIIE  FtsK/SpoIIIE family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.0   2.2e-05     0.026      35      61 ..     235     260 ..     224     262 .. 0.80

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 2.2e-05
                   GGGS-.SEEEE--TTSSHHHHHHHHHH CS
  FtsK_SpoIIIE  35 lkkmashllvaGatgsGKStalntLil 61 
                   ++ +++++l+ G  g+GKS ++++L++
    KOO20893.1 235 QP-SPPNILIFGPVGTGKSSFIRSLMQ 260
                   33.347*******************96 PP

>> Roc  Ras of Complex, Roc, domain of DAPkinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.0   7.5e-05      0.09       2      71 ..     241     312 ..     240     334 .. 0.68
   2 ?   -0.6   0.0       1.3   1.5e+03      84     120 .]     369     406 ..     360     406 .. 0.59

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 7.5e-05
                 EEEESSTTSSHHHHHHCHCT...-CCC-E.EETTTTEEEEEEECGGSGGCTTBTTTTCEEEEEEEE-SGGCTTT CS
         Roc   2 vvlvGdsgvGKtsllkrfve...dkfsek.ekstigvdfltkevtkikgvendkkvkkvklniWDtaGqerfrs 71 
                 +++ G  g+GK+s+++++++   d+++   + st + + + +++ k+  ++++  +     ++WDtaG e  ++
  KOO20893.1 241 ILIFGPVGTGKSSFIRSLMQvveDDVDAGgNVSTGSGEGSVTKCLKVYPLTSS--TGAPVCALWDTAGIEVGSK 312
                 7899************9987443555544134444445555566667666544..3456789******997654 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 1.3
                 EEEEEGHHHHCHHHHHHHHHHHCS..SS-EEEEEE-TTT CS
         Roc  84 ilvydsrssenlkeWlkelkkvag..kspvilvgnkiDl 120
                 i+ +d  s++++ + ++++++v++  ++p ilv++k+D+
  KOO20893.1 369 IAATDI-SEDEATKAIQDFTHVVRdrDIPHILVITKADE 406
                 333333.34445566777776655125689******995 PP

>> AAA_24  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.0   2.8e-05     0.034       3      36 ..     239     271 ..     237     287 .. 0.88

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 2.8e-05
      AAA_24   3 lkiliyGpsgiGKTtlakelgpkplfidtekGlk 36 
                  +ili+Gp g+GK++++++l  +++  d+++G +
  KOO20893.1 239 PNILIFGPVGTGKSSFIRSL-MQVVEDDVDAGGN 271
                 68******************.9999999999865 PP

>> DUF815  Protein of unknown function (DUF815)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.0   3.2e-05     0.038      53      78 ..     238     263 ..     220     266 .. 0.79

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 3.2e-05
      DUF815  53 annvLLwGarGtGKSslvkallneya 78 
                   n+L++G  GtGKSs +++l++ ++
  KOO20893.1 238 PPNILIFGPVGTGKSSFIRSLMQVVE 263
                 469******************98766 PP

>> ATP_bind_1  Conserved hypothetical ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.0   0.0    0.0018       2.2       1      22 [.     243     264 ..     243     268 .. 0.90
   2 ?    2.5   0.0     0.085     1e+02     124     170 ..     364     408 ..     358     425 .. 0.77
   3 ?   -2.9   0.0       3.8   4.6e+03     197     227 ..     568     597 ..     561     604 .. 0.80

  Alignments for each domain:
  == domain 1  score: 8.0 bits;  conditional E-value: 0.0018
  ATP_bind_1   1 vvGpaGsGKttfvgalseilel 22 
                 + Gp+G GK++f+++l++++e+
  KOO20893.1 243 IFGPVGTGKSSFIRSLMQVVED 264
                 68****************9876 PP

  == domain 2  score: 2.5 bits;  conditional E-value: 0.085
  ATP_bind_1 124 lvvvyLvDsqrltd.ptkfisgllsalsamlrlelPhvvvlnkfDllk 170
                  vv+ ++ + +++d +tk i+       ++   ++Ph+ v++k+D  +
  KOO20893.1 364 GVVMCIAATDISEDeATKAIQD---FTHVVRDRDIPHILVITKADEYD 408
                 4555666666666678888888...66788899***********9766 PP

  == domain 3  score: -2.9 bits;  conditional E-value: 3.8
  ATP_bind_1 197 ykklaeaiaelleefalvlrflplssekees 227
                  ++++++i ++++ +++   f+++++++ +s
  KOO20893.1 568 LARQNQEIQDAITRMGAE-AFVQVERDDPSS 597
                 5678999*******9999.999999988776 PP

>> GTP_EFTU  Elongation factor Tu GTP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.6   0.0     0.018        21       5      29 ..     240     264 ..     237     279 .. 0.86
   2 ?    5.8   0.1    0.0074       8.9      94     139 ..     362     411 ..     358     415 .. 0.80

  Alignments for each domain:
  == domain 1  score: 4.6 bits;  conditional E-value: 0.018
                 EEEEEESTTSSHHHHHHHHHHHTTS CS
    GTP_EFTU   5 nigiighvDhGKtTLtdrLlyktga 29 
                 ni i g v +GK++++ +L++  ++
  KOO20893.1 240 NILIFGPVGTGKSSFIRSLMQVVED 264
                 9******************987665 PP

  == domain 2  score: 5.8 bits;  conditional E-value: 0.0074
                 -SEEEEEEETT....TBSTHHHHHHHHHHHHTTTEEEEEEESCGSTHHHH CS
    GTP_EFTU  94 lDgavlvvdav....eGvepqteevlrlalkegvpiivfiNKmDrlkael 139
                 ++g+v+ ++a+    +  +   +   ++++++++p i++i+K+D+ + +l
  KOO20893.1 362 VHGVVMCIAATdiseDEATKAIQDFTHVVRDRDIPHILVITKADEYDPDL 411
                 5677888887744445577788888999****************987665 PP

>> PPV_E1_C  Papillomavirus helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   7.5e-05      0.09     252     289 ..     228     265 ..     219     272 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 7.5e-05
    PPV_E1_C 252 lkefLkgvPkknclvllGppntGkslfamslikfLkGk 289
                 l++ + ++P    ++++Gp  tGks f  sl+++++  
  KOO20893.1 228 LQASVAKQPSPPNILIFGPVGTGKSSFIRSLMQVVEDD 265
                 55556677888899*******************98765 PP

>> AAA_7  P-loop containing dynein motor region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   0.00016      0.19      35      58 ..     240     263 ..     232     271 .. 0.89

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00016
       AAA_7  35 pvllvGptGtGKtviikdllkkld 58 
                 ++l+ Gp+GtGK++ i++l++ ++
  KOO20893.1 240 NILIFGPVGTGKSSFIRSLMQVVE 263
                 689***************999877 PP

>> NTPase_1  NTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   0.00019      0.23       1      72 [.     240     310 ..     240     321 .. 0.89

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00019
                 EEEEE--TTSSHHHHHHHHHHHH...GGGEEEEEEEEE-------EEEEEET.T--EEEEEETT---SSEET CS
    NTPase_1   1 kvfiTGppGvGKtTlvkkvlellkssgvkvgGfyteevreggrrigFkivdlasgeegiLarveakreprvg 72 
                 +++i Gp G+GK+ +++ +++++ +++v  gG +     eg    + k+  l+s + ++ +   ++ +++vg
  KOO20893.1 240 NILIFGPVGTGKSSFIRSLMQVV-EDDVDAGGNVSTGSGEGSVTKCLKVYPLTSSTGAPVCALWDTAGIEVG 310
                 58999******************.788********9999999999999999999999998887777777777 PP

>> RNA_helicase  RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   0.00029      0.35       1      27 [.     241     267 ..     241     291 .. 0.81

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00029
  RNA_helicase   1 iwlyGpsgeGKStlakeLakallkklk 27 
                   i+++Gp g+GKS+++++L++ ++++++
    KOO20893.1 241 ILIFGPVGTGKSSFIRSLMQVVEDDVD 267
                   689*****************9998873 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (685 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       439  (0.0244855); expected 358.6 (0.02)
Passed bias filter:                      384  (0.0214178); expected 358.6 (0.02)
Passed Vit filter:                        77  (0.00429472); expected 17.9 (0.001)
Passed Fwd filter:                        15  (0.000836633); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              15  [number of targets reported over threshold]
# CPU time: 0.62u 0.27s 00:00:00.89 Elapsed: 00:00:00.43
# Mc/sec: 4788.68
//
Query:       KOO20894.1  [L=152]
Description: hypothetical protein Ctob_001407, partial [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (152 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       415  (0.0231469); expected 358.6 (0.02)
Passed bias filter:                      346  (0.0192983); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.41u 0.27s 00:00:00.68 Elapsed: 00:00:00.43
# Mc/sec: 1067.87
//
Query:       KOO20895.1  [L=484]
Description: past-1, partial [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    5.9e-35  120.1   0.2    1.1e-34  119.3   0.2    1.4  1  DUF5600      Domain of unknown function (DUF5600)
    4.1e-15   55.6   0.0    1.2e-14   54.1   0.0    1.8  2  EF-hand_4    Cytoskeletal-regulatory complex EF hand
    1.1e-12   48.3   0.0    1.5e-10   41.4   0.0    2.3  1  Dynamin_N    Dynamin family
    7.3e-09   35.4   0.0    1.5e-08   34.4   0.0    1.6  1  EHD_N        N-terminal EH-domain containing protein
    1.1e-08   35.2   0.0    2.1e-08   34.3   0.0    1.5  1  MMR_HSR1     50S ribosome-binding GTPase
  ------ inclusion threshold ------
      0.027   14.7   0.0        1.8    8.8   0.0    2.3  2  Roc          Ras of Complex, Roc, domain of DAPkinase
      0.031   14.5   0.0      0.061   13.6   0.0    1.5  1  AAA_28       AAA domain
      0.033   13.7   0.0       0.46   10.0   0.0    2.3  2  GTP_EFTU     Elongation factor Tu GTP binding domain
      0.035   13.5   0.1        8.9    5.7   0.1    2.2  2  TniB         Bacterial TniB protein
       0.07   12.5   0.0       0.42    9.9   0.0    1.9  2  Gtr1_RagA    Gtr1/RagA G protein conserved region
       0.13   11.9   0.5       0.48   10.1   0.0    2.3  2  EF-hand_1    EF hand
       0.18   11.7   0.0         29    4.5   0.0    3.0  3  RsgA_GTPase  RsgA GTPase
        0.2   11.0   0.0       0.36   10.1   0.0    1.4  1  AIG1         AIG1 family


Domain annotation for each model (and alignments):
>> DUF5600  Domain of unknown function (DUF5600)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  119.3   0.2   7.7e-38   1.1e-34       1     107 []     284     395 ..     284     395 .. 0.96

  Alignments for each domain:
  == domain 1  score: 119.3 bits;  conditional E-value: 7.7e-38
     DUF5600   1 naalrklNdlvkRaRlvkvhalllaelrkempsv.fgkekkkkeLieelpeiyekvsrkhnlplgdFPdvekfkeklka....ldftkfkklkpkliea 94 
                 n++++klNdlv+R+R+v+++al+l+elr+e+++v +gk+kk+keLi+ l++i+ kvsr+h +p+gdFPdv+kf+++l++     dftkfkkl++kl+ +
  KOO20895.1 284 NNTTNKLNDLVYRTRMVRCQALVLDELRSETRKVmMGKDKKQKELIAGLEDIFFKVSRAHAIPPGDFPDVAKFRHILATneycRDFTKFKKLDDKLLGQ 382
                 6889***************************86549******************************************988877*************** PP

     DUF5600  95 ldellssdipkLm 107
                 ld++++++i +Lm
  KOO20895.1 383 LDTIIRDHIGNLM 395
                 ************9 PP

>> EF-hand_4  Cytoskeletal-regulatory complex EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.0       6.6   9.1e+03      72      89 ..     181     198 ..     176     201 .. 0.75
   2 !   54.1   0.0   8.8e-18   1.2e-14      19      95 ..     408     482 ..     404     484 .] 0.92

  Alignments for each domain:
  == domain 1  score: -3.3 bits;  conditional E-value: 6.6
   EF-hand_4  72 ifdlvngeikdvPselPe 89 
                 i+ + + +  d+P+el +
  KOO20895.1 181 ILLMFDANKVDIPDELAD 198
                 555677888899999977 PP

  == domain 2  score: 54.1 bits;  conditional E-value: 8.8e-18
   EF-hand_4  19 lkpednkltgdkvapvlknskleedklekiwdladidedgkldfeefciamrlifdlvngeikdvPselPewlvpes 95 
                 + ped k+ g+kvapvlk s l++  l  iw+l d++edg ld + f++am+l++    ++ + +P+++Pe+l+p s
  KOO20895.1 408 MLPEDGKVGGSKVAPVLKRSGLDQAVLRDIWNLVDVNEDGLLDADWFAVAMHLTMK--TKRGEPLPTTIPEALIPPS 482
                 5699*************************************************976..567789**********987 PP

>> Dynamin_N  Dynamin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.4   0.0   1.1e-13   1.5e-10       1     167 [.      57     216 ..      57     217 .. 0.83

  Alignments for each domain:
  == domain 1  score: 41.4 bits;  conditional E-value: 1.1e-13
                 EEEEEBTTTTHHHHHHHHHTS--S-..--SSS---S-EEEEECCT---CCS...SSEEEET-EB--CHHHHHHHHHHHHHHHTSSSS--SS-EEEEEEE CS
   Dynamin_N   1 iavvGsqSsGKSSvlnaLlgedilp..rgpnptTrrplelqlgeeeeaseravkeelkekekkledfsevreeieketekiagankgiskkvillkils 97 
                 ++++Gs+S GK++++  Ll +d+    +gp+ptT r+  +  g++e++            +  l+ f e+++  +   +++              ++ s
  KOO20895.1  57 VLLIGSYSVGKTTFIKYLLDRDYPGahIGPEPTTDRFQAIMFGHSEREI-----PGHALISNPLSPFAELTKFGNTFLSRLY-----------GCEVPS 139
                 689*******************8657799***************99944.....3333334555555555554444444444...........566889 PP

                 TTS-SEEEEE---B-SSSGTTS.......HHHHHHHSTTEEEEEEEETTS-CCC-CHHHHHHHHSTTBTTEEEEEE- CS
   Dynamin_N  98 llvkgltlvDlPGldsvnkrdq.......elvkeyikkadiilavtsanhdlsnsealflarevdpkgkrtivvltk 167
                     g tlvD+PG+    k+ +       +++k+++ ++d+il++ +an+     e  ++ r+++  ++++ v+l+k
  KOO20895.1 140 DFAMGCTLVDTPGVLAGRKQTEdrqysyyDVIKWFAPRCDMILLMFDANKVDIPDELADVIRHLEGYDDKIRVILNK 216
                 9999**********99888877889*************************88889999999***9999999999998 PP

>> EHD_N  N-terminal EH-domain containing protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.4   0.0   1.1e-11   1.5e-08       1      33 []      20      52 ..      20      52 .. 0.96

  Alignments for each domain:
  == domain 1  score: 34.4 bits;  conditional E-value: 1.1e-11
       EHD_N  1 gLkklYkkklkPLEeaYkFdeFhsplLtDaDFd 33
                g k +Y++ ++PLEe+Y  ++Fh p LtD DFd
  KOO20895.1 20 GVKAIYRDMVRPLEEQYLVNQFHYPMLTDQDFD 52
                5699****************************8 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.3   0.0   1.5e-11   2.1e-08       2     114 .]      57     216 ..      56     216 .. 0.76

  Alignments for each domain:
  == domain 1  score: 34.3 bits;  conditional E-value: 1.5e-11
                 EEEEESTTSSHHHHHHHHHTS...TEEESSSTTSSSSEEEEEEEETTEE........................................EEEEECGGCS CS
    MMR_HSR1   2 vaivGrpNvGKStLinaltge...kaivsdkpgtTrdinegrvklkgke........................................ielvDtpGli 57 
                 v+++G   vGK+t+i+ l+++    a+++ +p t r  + + + ++++e                                        ++lvDtpG++
  KOO20895.1  57 VLLIGSYSVGKTTFIKYLLDRdypGAHIGPEPTTDRF-QAIMFGHSEREipghalisnplspfaeltkfgntflsrlygcevpsdfamgCTLVDTPGVL 154
                 789*****************96656788888855544.444455343447788899999999999999*****************************98 PP

                 SHHHHHHHHHHHHHHHHC.....TSEEEEEEETTTTCSHHHHHHHHHHHHHTTSEEEEEEES CS
    MMR_HSR1  58 egaseekglgkaflalee.....adlillvvdaseeklkpldeeleelleeakkplilvlnk 114
                  g ++ ++ + ++ ++++     +d+ill++da++ ++ ++  ++ + le  ++++ ++lnk
  KOO20895.1 155 AGRKQTEDRQYSYYDVIKwfaprCDMILLMFDANKVDIPDELADVIRHLEGYDDKIRVILNK 216
                 767777777777777664444459********994445555555555555466778888887 PP

>> Roc  Ras of Complex, Roc, domain of DAPkinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.8   0.0    0.0013       1.8       2      24 ..      57      79 ..      56      95 .. 0.88
   2 ?    3.5   0.0     0.059        81      68     119 ..     166     218 ..     162     219 .. 0.71

  Alignments for each domain:
  == domain 1  score: 8.8 bits;  conditional E-value: 0.0013
                EEEESSTTSSHHHHHHCHCT-CC CS
         Roc  2 vvlvGdsgvGKtsllkrfvedkf 24
                v+l+G  +vGKt+++k ++++++
  KOO20895.1 57 VLLIGSYSVGKTTFIKYLLDRDY 79
                799*************9998776 PP

  == domain 2  score: 3.5 bits;  conditional E-value: 0.059
                 CTTTT-HHHHCTSCEEEEEEEGHHHHCHHHHHHHHHHHCS.SS-EEEEEE-TT CS
         Roc  68 rfrslhplylreaalailvydsrssenlkeWlkelkkvag.kspvilvgnkiD 119
                  ++ + + +  + ++++l++d+++ +  +e  + +++  g ++++ ++ nk+D
  KOO20895.1 166 SYYDVIKWFAPRCDMILLMFDANKVDIPDELADVIRHLEGyDDKIRVILNKAD 218
                 678888999999*********99886655555555555552345556778887 PP

>> AAA_28  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.0   4.4e-05     0.061       2      33 ..      57      91 ..      56     108 .. 0.80

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 4.4e-05
      AAA_28  2 ivitGgestGKTtlleaLaargyp..vv.pEaare 33
                + ++G +s GKTt ++ L +r+yp  ++ pE+ ++
  KOO20895.1 57 VLLIGSYSVGKTTFIKYLLDRDYPgaHIgPEPTTD 91
                789****************9988754345887665 PP

>> GTP_EFTU  Elongation factor Tu GTP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.8   0.0      0.21   2.9e+02       6      25 ..      57      76 ..      54     109 .. 0.82
   2 ?   10.0   0.0   0.00033      0.46      92     154 ..     176     247 ..     125     343 .. 0.78

  Alignments for each domain:
  == domain 1  score: 0.8 bits;  conditional E-value: 0.21
                EEEEESTTSSHHHHHHHHHH CS
    GTP_EFTU  6 igiighvDhGKtTLtdrLly 25
                + +ig    GKtT++  Ll 
  KOO20895.1 57 VLLIGSYSVGKTTFIKYLLD 76
                6789999*******999985 PP

  == domain 2  score: 10.0 bits;  conditional E-value: 0.00033
                 HT-SEEEEEEETTT.BSTHHHHHHHHHHHHTTTEEEEEEESCGST.HHHHHHHHHHHHHHHHHH.......H CS
    GTP_EFTU  92 rvlDgavlvvdave.GvepqteevlrlalkegvpiivfiNKmDrl.kaelkeiveevkqklsrk.......e 154
                   +D+ +l++da++ ++      v+r++  ++ +i v++NK+D l  +el +i +++  +l r         
  KOO20895.1 176 PRCDMILLMFDANKvDIPDELADVIRHLEGYDDKIRVILNKADSLePHELLKINSALTWNLARIlkgaetrR 247
                 579*********973699999************************878999999998888855544444440 PP

>> TniB  Bacterial TniB protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.4   0.0    0.0079        11      35      59 ..      54      78 ..      39      99 .. 0.80
   2 ?    5.7   0.1    0.0064       8.9     100     148 ..     282     334 ..     271     341 .. 0.71

  Alignments for each domain:
  == domain 1  score: 5.4 bits;  conditional E-value: 0.0079
        TniB 35 mpnlllvGdsnnGKtmivekFarlh 59
                 p +ll+G + +GKt+ ++   +++
  KOO20895.1 54 KPMVLLIGSYSVGKTTFIKYLLDRD 78
                4899*************99877655 PP

  == domain 2  score: 5.7 bits;  conditional E-value: 0.0064
        TniB 100 ararvskleqqvlrllrelkvrvLiiDEih....nllagsarkqreflnalks 148
                 +r++++++ ++ +   r ++ + L++DE+     +++ g+ +kq+e+++ l  
  KOO20895.1 282 PRNNTTNKLNDLVYRTRMVRCQALVLDELRsetrKVMMGKDKKQKELIAGLED 334
                 344445555555677899*********98522226999*******99988765 PP

>> Gtr1_RagA  Gtr1/RagA G protein conserved region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.0   0.0      0.34   4.7e+02       2      20 ..      57      75 ..      56      93 .. 0.85
   2 ?    9.9   0.0   0.00031      0.42      66     164 ..     166     258 ..     138     285 .. 0.79

  Alignments for each domain:
  == domain 1  score: -0.0 bits;  conditional E-value: 0.34
   Gtr1_RagA  2 vLLmGksgsGKtsmrsiiF 20
                vLL+G  + GKt+  + + 
  KOO20895.1 57 VLLIGSYSVGKTTFIKYLL 75
                8***********9887665 PP

  == domain 2  score: 9.9 bits;  conditional E-value: 0.00031
   Gtr1_RagA  66 lssqkeeifr.nvgvliyVfDvesreleedletlkeilealrqyspeakvfvlihKmDliqedereeifeerkeeireeieklekeeiqffaTSiwdes 163
                   ++  + f  +++ ++ +fD+++ +++++l++   ++++l  y+   k+ v+++K D ++ +e  +i ++ + ++ + ++ +e  + +++  S wd+ 
  KOO20895.1 166 SYYDVIKWFApRCDMILLMFDANKVDIPDELAD---VIRHLEGYDD--KIRVILNKADSLEPHELLKINSALTWNLARILKGAE--TRRIYVGSFWDQP 257
                 4444444443268899999****8899988765...6788888876..67789***************************9988..6799*******97 PP

   Gtr1_RagA 164 l 164
                 l
  KOO20895.1 258 L 258
                 7 PP

>> EF-hand_1  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.1       2.6   3.5e+03       2      13 ..     178     189 ..     177     189 .. 0.83
   2 ?   10.1   0.0   0.00035      0.48       2      20 ..     434     452 ..     433     460 .. 0.87

  Alignments for each domain:
  == domain 1  score: -2.0 bits;  conditional E-value: 2.6
                 HHHHHHHHTTTS CS
   EF-hand_1   2 lkeiFrefDkDg 13 
                 ++ i  +fD ++
  KOO20895.1 178 CDMILLMFDANK 189
                 6788999**997 PP

  == domain 2  score: 10.1 bits;  conditional E-value: 0.00035
                 HHHHHHHHTTTSSSEEEHH CS
   EF-hand_1   2 lkeiFrefDkDgdGkIdfe 20 
                 l++i++++D++ dG +d +
  KOO20895.1 434 LRDIWNLVDVNEDGLLDAD 452
                 799*************987 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.5   0.0     0.021        29     100     122 ..      55      77 ..      43      85 .. 0.86
   2 ?    0.0   0.1      0.51     7e+02     149     161 ..     141     153 ..     138     156 .. 0.84
   3 ?    2.5   0.0     0.088   1.2e+02      17      70 ..     179     230 ..     163     247 .. 0.74

  Alignments for each domain:
  == domain 1  score: 4.5 bits;  conditional E-value: 0.021
                  SEEEEECSTTSSHHHHHHHHCTT CS
  RsgA_GTPase 100 ktsvlvGqSGvGKStLinallpe 122
                   +++l+G+  vGK+t+i+ ll +
   KOO20895.1  55 PMVLLIGSYSVGKTTFIKYLLDR 77 
                  57899*************99865 PP

  == domain 2  score: 0.0 bits;  conditional E-value: 0.51
                  ETTTEEEESS-SS CS
  RsgA_GTPase 149 laegglliDtPGf 161
                  +a g +l+DtPG+
   KOO20895.1 141 FAMGCTLVDTPGV 153
                  566899******7 PP

  == domain 3  score: 2.5 bits;  conditional E-value: 0.088
                  -EEEEEEESTTTT--HHHHHHHHHHHHHTT-EEEEEEE-GGG--HHHHHHHHHH CS
  RsgA_GTPase  17 dqllivvslkepelslnlldrfLvlaeekgiepvivlnKiDlleeeeeleelke 70 
                  d +l+++ +++ ++  + l  ++ ++e  + ++ ++lnK+D le +e l ++++
   KOO20895.1 179 DMILLMFDANKVDIP-DELADVIRHLEGYDDKIRVILNKADSLEPHE-LLKINS 230
                  566666666655543.445557778888888999**********999.555544 PP

>> AIG1  AIG1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.0   0.00026      0.36      52     158 ..     146     248 ..     135     293 .. 0.84

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.00026
                 EEEE--SCCCTTCCHHCHHHHHHHHHHHCTT-ESEEEEEEETTB-SHHHHHHHHHHHHHHCGGGGGGEEEEEEEGGGGTTCCHHHHHHHHH-HHHHHHH CS
        AIG1  52 nViDTPglfdlsvsadkiskeivrclllseegihalllvlslgrfteedekalktlkelFGekilkylivvftrkddleddsledylsksspeaLkevl 150
                   +DTPg++   +++++ + +  + ++  ++  +++ll +++++++  de ++  +++l G +  +++ v++ ++d+le+++l +  s     +L ++l
  KOO20895.1 146 TLVDTPGVLAGRKQTEDRQYSYYDVIKWFAPRCDMILLMFDANKVDIPDE-LADVIRHLEGYD--DKIRVILNKADSLEPHELLKINS-ALTWNLARIL 240
                 579****************************************9997776.456666665543..66678899999999999665444.4445677788 PP

                 HHTTTSEE CS
        AIG1 151 kecgnRvv 158
                 k  + R++
  KOO20895.1 241 KGAETRRI 248
                 77777765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (484 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       449  (0.0250432); expected 358.6 (0.02)
Passed bias filter:                      442  (0.0246528); expected 358.6 (0.02)
Passed Vit filter:                        59  (0.00329076); expected 17.9 (0.001)
Passed Fwd filter:                        13  (0.000725082); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 0.55u 0.25s 00:00:00.80 Elapsed: 00:00:00.42
# Mc/sec: 3468.63
//
Query:       KOO20896.1  [L=513]
Description: putative e3 ubiquitin-protein ligase log2-like protein, partial [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.9e-15   56.5   6.0    2.8e-15   55.9   6.0    1.3  1  zf-C3HC4_3   Zinc finger, C3HC4 type (RING finger)
    8.2e-05   22.4   7.4    0.00014   21.7   7.4    1.4  1  zf-C3HC4     Zinc finger, C3HC4 type (RING finger)
    0.00014   22.1   8.5    0.00025   21.3   8.5    1.4  1  zf-RING_2    Ring finger domain
     0.0012   18.7   8.2     0.0022   17.8   8.2    1.4  1  Prok-RING_4  Prokaryotic RING finger family 4
     0.0012   18.8   8.7     0.0019   18.1   8.7    1.3  1  zf-RING_5    zinc-RING finger domain
  ------ inclusion threshold ------
      0.053   13.4   9.1      0.086   12.7   9.1    1.3  1  zf-C3HC4_2   Zinc finger, C3HC4 type (RING finger)
        0.3   10.8   3.1       0.64    9.7   3.1    1.5  1  zf-P11       P-11 zinc finger


Domain annotation for each model (and alignments):
>> zf-C3HC4_3  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.9   6.0   1.1e-18   2.8e-15       3      50 .]     400     448 ..     398     448 .. 0.95

  Alignments for each domain:
  == domain 1  score: 55.9 bits;  conditional E-value: 1.1e-18
                 SB-TTTSSSBS-EEETTEEEEEE-HHHHHHHHH.TT-B-TTT--B--EE CS
  zf-C3HC4_3   3 eeCviClerprnvvllpCgHlvlCeeCaekllk.rkkkCpiCrrpiekv 50 
                 ++C iC++ pr++vll+CgH  lC  Ca+++++ r ++CpiCr+pi+++
  KOO20896.1 400 DLCFICYSGPRDAVLLECGHGGLCFGCATRCMQmRFQECPICRQPISQI 448
                 68******************************99************985 PP

>> zf-C3HC4  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.7   7.4   5.3e-08   0.00014       1      41 []     402     441 ..     402     441 .. 0.94

  Alignments for each domain:
  == domain 1  score: 21.7 bits;  conditional E-value: 5.3e-08
                 -TTT-S--SS-E.E-TTS--.B-CHHHHHHHHCTSSB--TTT CS
    zf-C3HC4   1 CpiCleeakepnelleCkHs.fCskCirkilksrkkvkCPlC 41 
                 C iC + + +++ lleC+H  +C+ C +++++  + ++CP+C
  KOO20896.1 402 CFICYSGPRDAV-LLECGHGgLCFGCATRCMQ-MRFQECPIC 441
                 99**********.*******************.66667**** PP

>> zf-RING_2  Ring finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.3   8.5   9.7e-08   0.00025       2      44 .]     401     442 ..     400     442 .. 0.84

  Alignments for each domain:
  == domain 1  score: 21.3 bits;  conditional E-value: 9.7e-08
   zf-RING_2   2 eCpICleelssadsvlllpCgHv.fhreClerwlrssst.CPlCr 44 
                  C IC+   s +++++ll+CgH   ++ C++r ++ + + CP+Cr
  KOO20896.1 401 LCFICY---SGPRDAVLLECGHGgLCFGCATRCMQMRFQeCPICR 442
                 5****8...5556666666***99********99999999****9 PP

>> Prok-RING_4  Prokaryotic RING finger family 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.8   8.2   8.7e-07    0.0022       1      41 [.     402     446 ..     402     449 .. 0.89

  Alignments for each domain:
  == domain 1  score: 17.8 bits;  conditional E-value: 8.7e-07
  Prok-RING_4   1 CvlCgeqekkailepCgHl.vCkeCfdsk...dlssCPlCqrris 41 
                  C +C + +++a+l  CgH  +C  C        ++ CP+C++ is
   KOO20896.1 402 CFICYSGPRDAVLLECGHGgLCFGCATRCmqmRFQECPICRQPIS 446
                  9************************9877544677******9886 PP

>> zf-RING_5  zinc-RING finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.1   8.7   7.6e-07    0.0019       5      44 .]     402     443 ..     400     443 .. 0.91

  Alignments for each domain:
  == domain 1  score: 18.1 bits;  conditional E-value: 7.6e-07
   zf-RING_5   5 CfeklskeekfyltsCgHi.fCekClkkll.ekeavCpiCrk 44 
                 Cf ++s+ ++++l++CgH  +C  C+++++  + ++CpiCr+
  KOO20896.1 402 CFICYSGPRDAVLLECGHGgLCFGCATRCMqMRFQECPICRQ 443
                 88888888**********99**********88889*****97 PP

>> zf-C3HC4_2  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   9.1   3.4e-05     0.086       2      40 .]     402     441 ..     401     441 .. 0.93

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 3.4e-05
  zf-C3HC4_2   2 CpiCldmlkdpsvvtpCgHv.fCqkCilrsLeekn.eCPlC 40 
                 C iC+    d+ v+ +CgH+  C  C  r ++    eCP+C
  KOO20896.1 402 CFICYSGPRDA-VLLECGHGgLCFGCATRCMQMRFqECPIC 441
                 99********8.999****648*********99988***** PP

>> zf-P11  P-11 zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   3.1   0.00025      0.64      11      45 ..     410     445 ..     399     449 .. 0.78

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 0.00025
                 --SSEEE-SSSEEEHHHHH.HHHHHSSBETTTSSB- CS
      zf-P11  11 kdksLveCsdHYLClrClq.llLsvserCpiCkkPL 45 
                 +d  L+eC    LC  C +  +    + CpiC++P+
  KOO20896.1 410 RDAVLLECGHGGLCFGCATrCMQMRFQECPICRQPI 445
                 467799***********87255566799*******7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (513 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1382  (0.0770818); expected 358.6 (0.02)
Passed bias filter:                      417  (0.0232584); expected 358.6 (0.02)
Passed Vit filter:                        50  (0.00278878); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.55u 0.24s 00:00:00.79 Elapsed: 00:00:00.40
# Mc/sec: 3822.71
//
Query:       KOO20897.1  [L=2206]
Description: hypothetical protein Ctob_001419 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
      4e-13   49.8   0.0    6.8e-13   49.1   0.0    1.3  1  Bact_lectin  Bacterial lectin
    2.4e-11   43.6   0.0    4.4e-10   39.5   0.0    2.5  1  Lectin_legB  Legume lectin domain


Domain annotation for each model (and alignments):
>> Bact_lectin  Bacterial lectin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.1   0.0   7.6e-17   6.8e-13      22     194 ..    1710    1970 ..    1691    1972 .. 0.72

  Alignments for each domain:
  == domain 1  score: 49.1 bits;  conditional E-value: 7.6e-17
                   EEEEE-SSTT-EEEEEESSEEETTS-EEEEEEEE--.........................S...B.--EEEEEEEST-............-.... CS
  Bact_lectin   22 ivtltedkknqaGavtlknkiDlskdFtlkgsvnlg.........................qsnaggaDGigFalqpgq............l.... 76  
                    ++lt+ + + +Ga++++ k   ++ F+ ++++ l                           s   g+DG++F++q +             +    
   KOO20897.1 1710 KLRLTPSQPSRRGAAWYRRKQHVREGFRTSFAFRLEhpsrrcpdvahpsfeeqpeglrnllCS-GRGGDGFAFVIQDAGatsfdphcayaaVdqcn 1804
                   689*********************************************************953.456**********4444455555544414455 PP

                   ......--SGGGTTTTTSTT-EEEEEE-S--................SS-EEEEEEE............-TT-...........-SSS--EEEEEE CS
  Bact_lectin   77 ......GssGgglGigglpnafgfklDtyyN..............kagkpygafvktdangsletvkssssks...........ledgkwhpitis 141 
                          ++   +G+++l n +++k+Dt+yN              + g+ yga   t               s            +d+k+h++ i+
   KOO20897.1 1805 glaaaqCTEQCRIGYANLRNTLAIKFDTWYNaersdpwvshvavhSGGEDYGAPSDT---------------SaalaitsdfpdIADQKYHEVIIE 1885
                   33333333577889999**************96554444444444333344444444...............13345555677888999******* PP

                   E..-TT..............................T.EEEET.HHHT-.............SEEEEEEEEE-SSSB--EEEEEE CS
  Bact_lectin  142 Ydastk..............................t.tvtyd.dgsstvsidltkkvtkgktyvafgiaastGgatnlqqvkit 194 
                   Y +  +                              t +vt+d +   +v  +l++    ++   ++g++++tG+a+++++++  
   KOO20897.1 1886 YVPRFEtdgnlagmsitpgiaarlttaqrgnmlyvdTlKVTLDdAVILRVPLNLETLLRLDQGRAYVGFTGATGSAYQEHSIHAW 1970
                   *998886677888888777777777666555444432555555644455555666677788999****************99876 PP

>> Lectin_legB  Legume lectin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.5   0.0     5e-14   4.4e-10      28     236 ..    1709    1975 ..    1693    1987 .. 0.71

  Alignments for each domain:
  == domain 1  score: 39.5 bits;  conditional E-value: 5e-14
  Lectin_legB   28 gllqLtnktsnssvGralYkkplkLwdkssgnvasFstsFvfaI.sss.............kssss.............gdGlAFflaps...... 90  
                   + l+Lt+++ + ++G a+Y+++ + ++        F+tsF f     +             +   +             gdG+AF++         
   KOO20897.1 1709 KKLRLTPSQPS-RRGAAWYRRKQHVRE-------GFRTSFAFRLeH-PsrrcpdvahpsfeE---QpeglrnllcsgrgGDGFAFVIQDAgatsfd 1792
                   67889988766.789999999999984.......599999999952.235677666655541...044555666666669*******999998888 PP

  Lectin_legB   91 pslpaasagqyLGLf....nst..tn.nssnhivaVEfDtfknkef.DipdnhvGidvnsvkSvksasas.......................... 152 
                   p+   a+ +q+ GL+    +++     ++  + +a+ fDt  n+e  D+  +hv +   + +  + +++s                          
   KOO20897.1 1793 PHCAYAAVDQCNGLAaaqcTEQcrIGyANLRNTLAIKFDTWYNAERsDPWVSHVAVHSGGEDYGAPSDTSaalaitsdfpdiadqkyheviieyvp 1888
                   7889999********544322222123345559********9*7777*88******9987553333333334558888777777777777777777 PP

  Lectin_legB  153 .......lkslslssgkkvqvwidYdsaskrlsVtlaplkeeskpkkpllsykvdLskvl..peekvyvGFSastgsvsveahyilsWsFsss 236 
                          l  +s++ g    +  +  ++ + l V   +++       ++l ++++L+++l  ++ ++yvGF+++tgs ++++h i++W+F++s
   KOO20897.1 1889 rfetdgnLAGMSITPGIA--ARLTTAQRGNMLYVDTLKVTL---DDAVILRVPLNLETLLrlDQGRAYVGFTGATGS-AYQEHSIHAWRFQES 1975
                   776665544555555543..555555555666666665554...4689***********9876789***********.77**********987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (2206 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       449  (0.0250432); expected 358.6 (0.02)
Passed bias filter:                      171  (0.00953762); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.98u 0.30s 00:00:01.28 Elapsed: 00:00:00.49
# Mc/sec: 13471.84
//
Query:       KOO20898.1  [L=302]
Description: hypothetical protein Ctob_001410 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.056   13.4   0.0          3    7.9   0.0    2.6  3  HTH_Crp_2  Crp-like helix-turn-helix domain
       0.18   11.7   0.0       0.45   10.5   0.0    1.6  1  Rrp40_N    Exosome complex exonuclease Rrp40 N-terminal domai


Domain annotation for each model (and alignments):
>> HTH_Crp_2  Crp-like helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.8   0.0     0.013   1.1e+02      16      33 ..     148     166 ..     135     173 .. 0.72
   2 ?    7.9   0.0   0.00033         3      19      37 ..     178     196 ..     164     200 .. 0.81
   3 ?   -3.6   0.0       1.3   1.1e+04      25      38 ..     242     255 ..     236     256 .. 0.85

  Alignments for each domain:
  == domain 1  score: 2.8 bits;  conditional E-value: 0.013
                 C.EEEEEHHHHHHHHHTTS CS
   HTH_Crp_2  16 g.eielpltqeelAsmlGl 33 
                 + +  l l + e+A +lG 
  KOO20898.1 148 DrSNSLTLKRHEMAKRLGC 166
                 24446999*********95 PP

  == domain 2  score: 7.9 bits;  conditional E-value: 0.00033
                 EEEHHHHHHHHHTTSSHHH CS
   HTH_Crp_2  19 elpltqeelAsmlGltret 37 
                 elp+t+e lA  +Glt e 
  KOO20898.1 178 ELPFTNELLAKSVGLTVED 196
                 79**************996 PP

  == domain 3  score: -3.6 bits;  conditional E-value: 1.3
                 HHHHHHTTSSHHHH CS
   HTH_Crp_2  25 eelAsmlGltretv 38 
                  elA ++G t +tv
  KOO20898.1 242 NELAFRVGHTKSTV 255
                 58999999999987 PP

>> Rrp40_N  Exosome complex exonuclease Rrp40 N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.0     5e-05      0.45       6      18 ..      17      29 ..      14      60 .. 0.77

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 5e-05
     Rrp40_N  6 sklkLGPGLrhtP 18
                s l+LGPG++ tP
  KOO20898.1 17 SALRLGPGITRTP 29
                569*********9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (302 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       446  (0.0248759); expected 358.6 (0.02)
Passed bias filter:                      409  (0.0228122); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.45u 0.25s 00:00:00.70 Elapsed: 00:00:00.41
# Mc/sec: 2216.16
//
Query:       KOO20899.1  [L=580]
Description: hypothetical protein Ctob_001411 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (580 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       417  (0.0232584); expected 358.6 (0.02)
Passed bias filter:                      261  (0.0145574); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.52u 0.25s 00:00:00.77 Elapsed: 00:00:00.41
# Mc/sec: 4239.14
//
Query:       KOO20900.1  [L=436]
Description: hypothetical protein Ctob_001418 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
        2.3    8.6   9.9        1.3    9.4   3.8    2.9  2  CCDC-167  Coiled-coil domain-containing protein 167


Domain annotation for each model (and alignments):
>> CCDC-167  Coiled-coil domain-containing protein 167
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.8   0.2     0.018   3.2e+02      14      49 ..     208     243 ..     181     251 .. 0.66
   2 ?    9.4   3.8   7.5e-05       1.3      14      45 ..     256     287 ..     246     297 .. 0.88

  Alignments for each domain:
  == domain 1  score: 1.8 bits;  conditional E-value: 0.018
    CCDC-167  14 ascrerLeaverrlrkeelseeeResleeEeaslke 49 
                 +++  +L + e+ +r++  +e  R++l+e  +++ke
  KOO20900.1 208 TKLAMKLAEGEFLIRTNGAPEAMRQKLYEITNMIKE 243
                 334444555555556666666669999999999987 PP

  == domain 2  score: 9.4 bits;  conditional E-value: 7.5e-05
    CCDC-167  14 ascrerLeaverrlrkeelseeeResleeEea 45 
                 a+++ +Le+v+r+l+ +   +eeR++ e+Ee+
  KOO20900.1 256 AKLEAQLEEVDRQLKAQAYADEERRRHEHEER 287
                 67899*********************998876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (436 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1385  (0.0772491); expected 358.6 (0.02)
Passed bias filter:                      452  (0.0252106); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.54u 0.26s 00:00:00.80 Elapsed: 00:00:00.41
# Mc/sec: 3169.42
//
Query:       KOO20901.1  [L=389]
Description: hypothetical protein Ctob_001416 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
  ------ inclusion threshold ------
       0.05   13.7   0.1        0.1   12.7   0.1    1.5  1  Phage_lysis  Bacteriophage Rz lysis protein


Domain annotation for each model (and alignments):
>> Phage_lysis  Bacteriophage Rz lysis protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.1   5.7e-06       0.1      38      66 ..     302     330 ..     282     351 .. 0.84

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 5.7e-06
  Phage_lysis  38 akhtkeLadaksendrlradvaaGrrrLr 66 
                   ++++eL++a  +  ++radva Gr+ Lr
   KOO20901.1 302 KRFQEELENADIKTPVIRADVARGRQLLR 330
                  58**********************96555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (389 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       461  (0.0257125); expected 358.6 (0.02)
Passed bias filter:                      391  (0.0218082); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.23s 00:00:00.70 Elapsed: 00:00:00.40
# Mc/sec: 2951.99
//
Query:       KOO20902.1  [L=290]
Description: hypothetical protein Ctob_001417 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (290 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       332  (0.0185175); expected 358.6 (0.02)
Passed bias filter:                      231  (0.0128842); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.41u 0.23s 00:00:00.64 Elapsed: 00:00:00.38
# Mc/sec: 2281.18
//
Query:       KOO20903.1  [L=301]
Description: protein sec13-like isoform 1 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    6.5e-19   67.9  15.4     0.0018   19.1   0.3    6.3  6  WD40         WD domain, G-beta repeat
      3e-07   30.6   3.6      0.036   14.4   0.3    4.2  4  ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain


Domain annotation for each model (and alignments):
>> WD40  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.3   0.0    0.0011       9.5      13      37 ..      10      34 ..       4      35 .. 0.79
   2 !   19.1   0.3     2e-07    0.0018       5      37 ..      46      81 ..      42      82 .. 0.84
   3 !   10.4   0.0   0.00011      0.98       2      28 ..      90     119 ..      89     127 .. 0.67
   4 !   13.9   0.2   8.6e-06     0.077       7      38 .]     146     180 ..     138     180 .. 0.73
   5 !   12.0   0.2   3.4e-05       0.3      10      37 ..     201     233 ..     195     234 .. 0.79
   6 !   10.9   0.7   7.6e-05      0.68      12      37 ..     251     276 ..     244     277 .. 0.85

  Alignments for each domain:
  == domain 1  score: 7.3 bits;  conditional E-value: 0.0011
                EEEEEEETTSSEEEEEETTSEEEEE CS
        WD40 13 vtslafspdgawlasGsdDgtvriW 37
                +++++ +  g+ la+++ D+ ++i+
  KOO20903.1 10 IHDVQLDYFGKQLATAGGDRRIKIY 34
                678888888889996644******8 PP

  == domain 2  score: 19.1 bits;  conditional E-value: 2e-07
                EEEESS.SSEEEEE..EETTSSEEEEEETTSEEEEE CS
        WD40  5 rtltGH.ssvtsla..fspdgawlasGsdDgtvriW 37
                 +l GH ++v+ +a   ++ g+ las+s+D+ v +W
  KOO20903.1 46 AELVGHdGPVWRVAwaHPQFGNVLASCSYDRQVFVW 81
                5789**888****7777777777************* PP

  == domain 3  score: 10.4 bits;  conditional E-value: 0.00011
                 EEEEEEESS.SSEEEEEEETTSSE........EEEE CS
        WD40   2 qclrtltGH.ssvtslafspdgaw........lasG 28 
                 ++++++ GH +sv++++      +        la++
  KOO20903.1  90 SLVHKFLGHeGSVNCIS------FgprefglrLACA 119
                 7899*****999****6......4444444445544 PP

  == domain 4  score: 13.9 bits;  conditional E-value: 8.6e-06
                 EESSSS.EEEEEEETTSSE.........EEEEETTSEEEEEE CS
        WD40   7 ltGHss.vtslafspdgaw.........lasGsdDgtvriWd 38 
                 +++H+  v+++      +w         +++G+ D+ v+iW+
  KOO20903.1 146 IKAHKIgVNAV------SWapacsgmrlVTAGC-DNLVKIWN 180
                 57995569***......7766666688445667.*******8 PP

  == domain 5  score: 12.0 bits;  conditional E-value: 3.4e-05
                 S.SSEEEEEEETTSSE..........EEEEETTSEEEEE CS
        WD40  10 H.ssvtslafspdgaw..........lasGsdDgtvriW 37 
                 H ++v+++a      w          +as+s D++v iW
  KOO20903.1 201 HtDWVRDVA------WaptvdgaaemIASCSQDKKVIIW 233
                 8666999*5......5555555777799*********** PP

  == domain 6  score: 10.9 bits;  conditional E-value: 7.6e-05
                 SEEEEEEETTSSEEE.EEETTSEEEEE CS
        WD40  12 svtslafspdgawla.sGsdDgtvriW 37 
                  v+s+++s  g  la +G+ D+ v +W
  KOO20903.1 251 AVWSVSWSVTGGILAvAGG-DNQVTLW 276
                 39***********975788.******* PP

>> ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.5   0.0   0.00027       2.4      39      77 ..       8      46 ..       2      63 .. 0.79
   2 !    4.0   0.0    0.0068        61       9      65 ..      68     128 ..      58     134 .. 0.78
   3 ?    2.0   0.1     0.029   2.6e+02      34      67 ..     146     181 ..     116     194 .. 0.72
   4 !   14.4   0.3     4e-06     0.036       3      65 ..     210     276 ..     208     289 .. 0.74

  Alignments for each domain:
  == domain 1  score: 8.5 bits;  conditional E-value: 0.00027
  ANAPC4_WD40 39 sevrsLaWkpdgklLavaysdgevrlldaesgkvvhsls 77
                 + +++++    gk La a  d +++++++ +g+  h+  
   KOO20903.1  8 ELIHDVQLDYFGKQLATAGGDRRIKIYEVVNGEKSHQTA 46
                 56777777888**********************999875 PP

  == domain 2  score: 4.0 bits;  conditional E-value: 0.0068
  ANAPC4_WD40   9 LiAlatedgellvfRlngqrvwtl..eedkedsevrsLaWkpd..gklLavaysdgevrll 65 
                   +A  + d ++ v R    + w+l  +  +++++v+++++ p   g  La a sd ++ +l
   KOO20903.1  68 VLASCSYDRQVFVWREHSPQQWSLvhKFLGHEGSVNCISFGPRefGLRLACASSDENIAVL 128
                  5778888999999999888888886555678899999999776226778888888888765 PP

  == domain 3  score: 2.0 bits;  conditional E-value: 0.029
  ANAPC4_WD40  34 edkedsevrsLaWkp..dgklLavaysdgevrllda 67 
                   ++++  v++++W p  +g  L+ a  d+ v++ + 
   KOO20903.1 146 IKAHKIGVNAVSWAPacSGMRLVTAGCDNLVKIWNC 181
                  467788899999998446999999999999999876 PP

  == domain 4  score: 14.4 bits;  conditional E-value: 4e-06
  ANAPC4_WD40   3 wcptmD....LiAlatedgellvfRlngqrvwtleedkedsevrsLaWkpdgklLavaysdgevrll 65 
                  w pt D    +iA  ++d+++++        w  ++ + +  v s++W+  g +Lava  d++v l 
   KOO20903.1 210 WAPTVDgaaeMIASCSQDKKVIIWTAGRSGEWVPKTIQMSCAVWSVSWSVTGGILAVAGGDNQVTLW 276
                  55555444447777777777777666555555556689999***********************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (301 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       362  (0.0201908); expected 358.6 (0.02)
Passed bias filter:                      297  (0.0165653); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.45u 0.25s 00:00:00.70 Elapsed: 00:00:00.41
# Mc/sec: 2205.06
//
Query:       KOO20904.1  [L=442]
Description: amino acid permease [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.4e-18   64.9  19.0    9.5e-18   64.1  19.0    1.3  1  Aa_trans  Transmembrane amino acid transporter protein


Domain annotation for each model (and alignments):
>> Aa_trans  Transmembrane amino acid transporter protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.1  19.0   5.3e-22   9.5e-18       9     374 ..      41     424 ..      34     430 .. 0.86

  Alignments for each domain:
  == domain 1  score: 64.1 bits;  conditional E-value: 5.3e-22
    Aa_trans   9 vlnlikaivGaGvLaLPyAfkqlGlivGlillllvallslytl.llLvkcsktlasgkrnksYgdlgyrllGpkgkliidlailvqlfGvgvsylilig 106
                 v++l ++++G+ +L +P  f q G+++  +++++va l   t+ l+L  +   +   +++++ gdl+   +G+ +k i+  +    l+G++++    + 
  KOO20904.1  41 VFTLWNTMMGSTLLVMPNIFWQSGWVMCTLVSVIVASLATHTAgLVLHHAEGLM--ADESAELGDLAALHFGKTAKWITFITGSGVLIGAATAMHCYAR 137
                 89************************9999888887666666515555555555..59***************99999999999*************** PP

    Aa_trans 107 dllpaifesffdt......................lllsnvyfilisaliiipLslipnlskLsylSllalvsslyyivilvlvvaelvklelkgvsee 183
                   l +++e   ++                       ++   +++l +  i +pL+ +p ++ L  +  ++++++l+ i+++++ +a     e+  ++++
  KOO20904.1 138 TVLEHLVEYGPEQgglcfaaghedadgegpcaaalGKYAYWVYTLSVLPITVPLANLPTIRLLARIGGVGIFCFLT-ILAFAFTSAFVSAAEHGVQGTD 235
                 *******998877899999999********9976666666677778889*************************98.5555555555555555555666 PP

    Aa_trans 184 tvkkasklkglflaigiivFAftghavlleiqnelkdpskfkkmtkvlllsiilatvlyilvGlvG........YltFGne.vkgnillnlpkss..il 271
                 ++ ++    + ++a+gi+  +f  h   ++i+    +p k +   + l +++ l+ ++y+++G++         +++ G++ +   +++  ++++   +
  KOO20904.1 236 PA-EYWRPESASIAFGIFSMSFFIHNAHITIMRGAAQPHKNQ---RNLATAFFLVWICYASMGVASnlfppggdFAALGSDdAANGLISLAQPKAmaPF 330
                 65.77777899*****************************55...9******************9866666677889996514444555555555799* PP

    Aa_trans 272 ivivnlllvlhlilsfplqlhplrqvvenllikkeavagasekeapkskllrlvirlllvvityliAlsvpslakvlslvGatsstplsfilPalfhlk 370
                  v++++++++++i+ +p++l+ +r+ +   +          +k++ + ++  l++ l l +i+ ++Al    ++ +l +vG+ +++ ++f +Pal h +
  KOO20904.1 331 LVLARIAVLVQAITVYPVLLFIIRAQLFSAVY---------YKKPYPGWMPVLLFSLTLATISSTVALAGIPISVILKFVGSAGGFVCVFCIPALVHAA 420
                 ***************************99994.........68999*********************99999*************************99 PP

    Aa_trans 371 likt 374
                 + ++
  KOO20904.1 421 VHWK 424
                 8876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (442 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       531  (0.0296168); expected 358.6 (0.02)
Passed bias filter:                      243  (0.0135535); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.27s 00:00:00.73 Elapsed: 00:00:00.41
# Mc/sec: 3249.83
//
Query:       KOO20905.1  [L=556]
Description: ATP-dependent zinc metalloprotease ftsh mitochondrial-like protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.4e-63  213.0   1.4    5.6e-63  212.3   1.4    1.3  1  Peptidase_M41    Peptidase family M41
    7.4e-43  146.1   0.0      2e-42  144.7   0.0    1.8  1  AAA              ATPase family associated with various cellul
    8.4e-14   51.1   0.4    2.6e-13   49.6   0.0    2.0  2  AAA_lid_3        AAA+ lid domain
      7e-06   25.5   0.0    1.4e-05   24.4   0.0    1.5  1  TIP49            TIP49 P-loop domain
    1.9e-05   24.7   0.0    5.3e-05   23.2   0.0    1.8  1  AAA_5            AAA domain (dynein-related subfamily)
    2.6e-05   24.6   0.9      0.003   17.9   0.2    3.0  3  AAA_16           AAA ATPase domain
    5.7e-05   22.9   0.0    0.00016   21.5   0.0    1.7  1  RuvB_N           Holliday junction DNA helicase RuvB P-loop d
    0.00019   21.7   0.1      0.029   14.7   0.0    2.6  2  AAA_22           AAA domain
     0.0063   16.0   0.4       0.56    9.6   0.2    2.4  2  PhoH             PhoH-like protein
     0.0081   15.7   0.0      0.038   13.5   0.0    1.9  1  AAA_7            P-loop containing dynein motor region
     0.0091   15.7   0.2      0.023   14.5   0.0    1.7  1  IstB_IS21        IstB-like ATP binding protein
  ------ inclusion threshold ------
      0.022   15.3   0.0      0.057   14.0   0.0    1.8  1  AAA_18           AAA domain
      0.023   14.8   0.0       0.07   13.2   0.0    1.8  1  AAA_2            AAA domain (Cdc48 subfamily)
      0.025   14.0   0.3        0.1   12.0   0.2    2.1  2  Mg_chelatase     Magnesium chelatase, subunit ChlI
      0.046   14.0   0.0       0.12   12.6   0.0    1.7  1  AAA_28           AAA domain
      0.047   13.8   0.0       0.12   12.6   0.0    1.8  1  AAA_33           AAA domain
      0.049   13.5   0.0        1.3    8.9   0.0    2.4  2  NACHT            NACHT domain
      0.054   13.9   0.4       0.13   12.7   0.0    1.9  2  AAA_17           AAA domain
      0.069   12.8   0.1       0.69    9.6   0.1    2.3  1  Sigma54_activat  Sigma-54 interaction domain
      0.073   13.4   0.1         12    6.2   0.0    2.7  2  SpoU_sub_bind    RNA 2'-O ribose methyltransferase substrate 
      0.098   12.7   0.0       0.21   11.6   0.0    1.5  1  AAA_14           AAA domain
       0.14   12.6   0.2       0.48   10.9   0.2    1.9  1  FtsA             Cell division protein FtsA
       0.16   11.5   1.9       0.61    9.6   0.4    2.4  3  AAA_25           AAA domain
       0.16   11.3   0.1       0.86    8.9   0.0    2.0  2  ATPase           KaiC
       0.19   10.9   0.0        0.3   10.3   0.0    1.3  1  DUF2075          Uncharacterized conserved protein (DUF2075)
        2.1    8.8   6.4        1.4    9.4   4.3    1.8  1  V-ATPase_G_2     Vacuolar (H+)-ATPase G subunit


Domain annotation for each model (and alignments):
>> Peptidase_M41  Peptidase family M41
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  212.3   1.4   8.1e-66   5.6e-63       2     191 .]     317     496 ..     316     496 .. 0.96

  Alignments for each domain:
  == domain 1  score: 212.3 bits;  conditional E-value: 8.1e-66
                    X--HHHHHHHHHHHHHHHHHHCCSSS-S-B--EES--TTS-----------TSS--BHHHHHHHHHHHHHHHHHHHHHHH..S-BGGGHHHHHHHH CS
  Peptidase_M41   2 visekekklvAyHEaGHalvglllkeadpveKvtiiPRgqalGltlslPeedklsltkeellarlavllGGraaEelifg..evttGasnDlekat 95 
                    vis ++ kl+AyHE+GHa+v+l +++a+p++K+ti+PRg alG++ +lPe+d+++l+k+++la+++v++GGr+aEeli+g  +vttGas+Dl++at
     KOO20905.1 317 VISPENLKLTAYHEGGHAIVALKTPGAMPIHKATIMPRGDALGMVSYLPEKDQMNLSKQQMLAHIDVCMGGRVAEELIYGadHVTTGASSDLQQAT 412
                    7999******************************************************************************************** PP

                    HHHHHHHHTS---TTT-S--------..----.------SS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHSEE-HHHHHHH CS
  Peptidase_M41  96 kiarkmvtefGmsdklGpvsleeeeeeevflgkelkkekelseetaeeideevkelveeayerakeileekreelealaeaLlekEtldaeeieel 191
                    ++ar+mvt++Gm ++lGp+ ++++e             + ls++ +e+i++e+k++v++a ++a++il+e++e+l++la+ L+ +Etl+++ei+++
     KOO20905.1 413 NMARNMVTKYGMGETLGPLYHDRSEM------------EMLSPASREAIEAEIKAFVTRAERNARKILTENKEQLHRLAQGLIAHETLNSDEIKQV 496
                    *******************9666544............35899**************************************************986 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  144.7   0.0   2.9e-45     2e-42       2     131 ..     107     235 ..     106     236 .. 0.97

  Alignments for each domain:
  == domain 1  score: 144.7 bits;  conditional E-value: 2.9e-45
                 EEESSTTSSHHHHHHHHHHHHTHEEEEEETTTCSSSSTTHHHHHHHHHHHHHHHTSTSEEEEEETGGGHHHHHTTCCCHHHHHHHHHHHHHHHHTTTSS CS
         AAA   2 llyGppGtGKTllakavakelgvefleisgsellskyvgesekkirelfkeakekakpsilfiDEidalaksrsgseseeeervvnqLlteldgvkkke 100
                 ll+GppGtGKTlla+ava e+gv+f+ +sgse+ + +vg ++k++relf +ak+ a p+i+fiDEida++++r+ +e++  + ++nqLl e+dg++++ 
  KOO20905.1 107 LLTGPPGTGKTLLARAVAGEAGVPFFYMSGSEFEEVFVGVGAKRVRELFGAAKKRA-PCIIFIDEIDAIGSHRNPKEQQAMKMTLNQLLVEMDGFQQN- 203
                 9******************************************************9.****************999*********************7. PP

                 STEEEEEEESSGGGSTHHHHS.TTSSEEEETT CS
         AAA 101 skvivigatnrpdkldpallr.gRfdrkieie 131
                 + viv++atn p+ ld+al+r gRfd ++ ++
  KOO20905.1 204 AGVIVLAATNFPEVLDRALVRpGRFDTRVTVP 235
                 55**************************9987 PP

>> AAA_lid_3  AAA+ lid domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.6   0.0   3.7e-16   2.6e-13       1      44 [.     258     301 ..     258     302 .. 0.98
   2 ?   -2.1   0.1       5.3   3.6e+03      17      30 ..     451     464 ..     451     466 .. 0.90

  Alignments for each domain:
  == domain 1  score: 49.6 bits;  conditional E-value: 3.7e-16
   AAA_lid_3   1 dvdlkeLAerTeGySGADlaalcreAallAlrrgikeitmedfe 44 
                 dvdl+ +A++T+G+SGADl++l + Aal+A  ++ k+++m+d+e
  KOO20905.1 258 DVDLETIARATPGFSGADLSNLMNVAALRASHDDKKKVGMSDLE 301
                 9*****************************************97 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 5.3
   AAA_lid_3  17 ADlaalcreAallA 30 
                 A+++a + +A ++A
  KOO20905.1 451 AEIKAFVTRAERNA 464
                 9*******998887 PP

>> TIP49  TIP49 P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.4   0.0   2.1e-08   1.4e-05       9      88 ..      50     139 ..      43     147 .. 0.76

  Alignments for each domain:
  == domain 1  score: 24.4 bits;  conditional E-value: 2.1e-08
                 XXXXXXXXXXXXXXXX.....XXXXXXXXXXXXXXXXXXXXX....XXXXX...XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
       TIP49   9 kgLGldedgeaekeee.....glvGqkkareaagvivelike....kklaG...ravLlaGpsgtGktalaiaiskelgedvpfvalsgsev 88 
                 kgLGl ++     + +      +vG  +a+e    iv+ +++     +l+G   ++ Ll+Gp+gtGkt la a++ e g  vpf  +sgse+
  KOO20905.1  50 KGLGLGSTDVQPVQGSpkrfsDVVGVDEAKEDLQDIVKYLRQpktfTRLGGklpKGCLLTGPPGTGKTLLARAVAGEAG--VPFFYMSGSEF 139
                 567765554322222234555899*******99999999998333335777444589********************98..*********96 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.2   0.0   7.7e-08   5.3e-05       2      79 ..     106     176 ..     105     224 .. 0.78

  Alignments for each domain:
  == domain 1  score: 23.2 bits;  conditional E-value: 7.7e-08
                 EEEE--SSSSHHHHHHHGGGGBS--EEEEE--TT--HHHHH--B--.........--------..G-SEEEEESGGG--H CS
       AAA_5   2 vlLvGppGtgKselaerlaaalnreveyvqltrdtteedlkgrreikngttslvdsplvraar..egeilvlDEveraes 79 
                  lL GppGtgK+ la+ +a   + +++y+ +++    e+++ ++       ++v  +l  aa+   ++i+++DE++ + s
  KOO20905.1 106 CLLTGPPGTGKTLLARAVAGEAGVPFFYMSGSE---FEEVFVGVGA-----KRV-RELFGAAKkrAPCIIFIDEIDAIGS 176
                 59****************************999...4777777773.....333.4555566667999*******97654 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.9   0.2   4.4e-06     0.003      24      47 ..     103     126 ..      76     144 .. 0.77
   2 ?    3.7   0.0       0.1        71     123     149 ..     151     176 ..     136     208 .. 0.77
   3 ?   -1.8   0.0       5.1   3.5e+03     111     136 ..     441     466 ..     404     492 .. 0.74

  Alignments for each domain:
  == domain 1  score: 17.9 bits;  conditional E-value: 4.4e-06
      AAA_16  24 pelvllsGesGvGKsslvrellra 47 
                 p  +ll+G++G+GK+ l+r+++ +
  KOO20905.1 103 PKGCLLTGPPGTGKTLLARAVAGE 126
                 489****************99854 PP

  == domain 2  score: 3.7 bits;  conditional E-value: 0.1
      AAA_16 123 lkrllallsrderplvlvlDdlqwade 149
                 +++l+  +++ + p ++++D+++ + +
  KOO20905.1 151 VRELFGAAKK-RAPCIIFIDEIDAIGS 176
                 5667777777.778*********6655 PP

  == domain 3  score: -1.8 bits;  conditional E-value: 5.1
      AAA_16 111 lagaeasrllellkrllallsrderp 136
                 l++a+++++ +++k+++ +++r++r+
  KOO20905.1 441 LSPASREAIEAEIKAFVTRAERNARK 466
                 45666677777777777777766654 PP

>> RuvB_N  Holliday junction DNA helicase RuvB P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.5   0.0   2.3e-07   0.00016       3      96 ..      66     174 ..      65     197 .. 0.68

  Alignments for each domain:
  == domain 1  score: 21.5 bits;  conditional E-value: 2.3e-07
      RuvB_N   3 Pksleeyigqekvkeklkifieaakkr.......eealdhvllyGpPGlGkttlakiiakelgvklkitsgPvlek......agdlaalltnleekd.. 86 
                 Pk++++ +g ++ ke+l+ +++  ++        ++    +ll+GpPG Gkt la+ +a e gv +   sg   e+      a+ +  l+   +++   
  KOO20905.1  66 PKRFSDVVGVDEAKEDLQDIVKYLRQPktftrlgGKLPKGCLLTGPPGTGKTLLARAVAGEAGVPFFYMSGSEFEEvfvgvgAKRVRELFGAAKKRApc 164
                 89999999999999999988876655411111214556789*************************999998877522211122333333333333222 PP

      RuvB_N  87 vlfideihrl 96 
                 ++fidei  +
  KOO20905.1 165 IIFIDEIDAI 174
                 7777777655 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   0.0   4.1e-05     0.029       8      29 ..     106     127 ..     102     141 .. 0.84
   2 ?    4.2   0.0     0.071        49      87     129 ..     159     210 ..     146     218 .. 0.55

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 4.1e-05
      AAA_22   8 lvvtGesGtGKTtllrrlleql 29 
                 +++tG++GtGKT+l+r ++ ++
  KOO20905.1 106 CLLTGPPGTGKTLLARAVAGEA 127
                 589*************998765 PP

  == domain 2  score: 4.2 bits;  conditional E-value: 0.071
      AAA_22  87 raravielliiDEaqhlr..s........eealeeLrsllnl..srkgvqliLvG 129
                 ++ra + ++ iDE++ +   +        +  l++L  l++    +++  +i+  
  KOO20905.1 159 KKRA-PCIIFIDEIDAIGshRnpkeqqamKMTLNQL--LVEMdgFQQNAGVIVLA 210
                 3333.59**********8651555554443334444..22224444444444444 PP

>> PhoH  PhoH-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.6   0.2   0.00081      0.56      23      40 ..     107     124 ..      89     129 .. 0.87
   2 ?    3.9   0.0     0.045        31     133     160 ..     450     477 ..     445     500 .. 0.83

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 0.00081
                 EEE--TTSSTTHHHHHHH CS
        PhoH  23 faiGpaGtGKtylavala 40 
                   +Gp GtGKt+la a+a
  KOO20905.1 107 LLTGPPGTGKTLLARAVA 124
                 578***********9998 PP

  == domain 2  score: 3.9 bits;  conditional E-value: 0.045
                 HHHHHHHHTTB-TT-EEEEEE------- CS
        PhoH 133 keqmkmfltRlGenskvvvtGdvtqidl 160
                 ++++k f+tR  +n++ ++t + +q   
  KOO20905.1 450 EAEIKAFVTRAERNARKILTENKEQLHR 477
                 6899****************99999765 PP

>> AAA_7  P-loop containing dynein motor region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.5   0.0   5.5e-05     0.038      34     111 ..     104     173 ..      91     200 .. 0.82

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 5.5e-05
       AAA_7  34 kpvllvGptGtGKtviikdllkkldkekylsltinfsaqtsanqlqdiiesklekrrkgvygPpggk.klvvFvDDlnm 111
                 k +ll+Gp GtGKt++++ +  +          + f  ++s +++ +++     kr ++++g+++++  +++F+D+++ 
  KOO20905.1 104 KGCLLTGPPGTGKTLLARAVAGEAG--------VPF-FYMSGSEFEEVFVGVGAKRVRELFGAAKKRaPCIIFIDEIDA 173
                 679**************99988877........555.4567889999***************98765269*****9975 PP

>> IstB_IS21  IstB-like ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.5   0.0   3.3e-05     0.023      49      71 ..     105     127 ..      83     141 .. 0.91

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 3.3e-05
   IstB_IS21  49 nivllGpsGvGKshlaialgvea 71 
                 +++l+Gp+G+GK+ la a++ ea
  KOO20905.1 105 GCLLTGPPGTGKTLLARAVAGEA 127
                 689***************98765 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.0   8.3e-05     0.057       2      44 ..     107     170 ..     106     224 .. 0.64

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 8.3e-05
      AAA_18   2 lltGtpGvGKttlakeLskrlgf.....................gvnlrdvakenglllevdpe 44 
                 lltG+pG+GKt la++++ + g+                     +++l   ak++ +++ + +e
  KOO20905.1 107 LLTGPPGTGKTLLARAVAGEAGVpffymsgsefeevfvgvgakrVRELFGAAKKRAPCIIFIDE 170
                 69***************87766666666655656666666666655555555555555555555 PP

>> AAA_2  AAA domain (Cdc48 subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.0    0.0001      0.07       7      83 ..     107     177 ..     104     199 .. 0.72

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 0.0001
                 EEE--TTSSHHHHHHHHHHHTT-....-EEEEEGGG---..----THHHHHHHHHTTT-HHHHTTSEEEEETGGG---- CS
       AAA_2   7 lllgptgvGktelakalaellfvkkekkliradaselle..eeevehlvsrligappgyvgaeegGivllDEidKihpk 83 
                 ll+gp g+Gkt+la+a+a    v    ++  +  se+ e      ++ v +l g      ++    i+++DEid i ++
  KOO20905.1 107 LLTGPPGTGKTLLARAVAGEAGV----PFFYMSGSEFEEvfVGVGAKRVRELFG----AAKKRAPCIIFIDEIDAIGSH 177
                 789******************98....999999999999222222333333333....33444456********99885 PP

>> Mg_chelatase  Magnesium chelatase, subunit ChlI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.0         6   4.1e+03     111     129 ..      74      92 ..      70      95 .. 0.86
   2 ?   12.0   0.2   0.00014       0.1      26      43 ..     107     124 ..     101     127 .. 0.90

  Alignments for each domain:
  == domain 1  score: -3.1 bits;  conditional E-value: 6
  Mg_chelatase 111 fLDElpefkrkvlevLReP 129
                    +DE+ e  +++++ LR+P
    KOO20905.1  74 GVDEAKEDLQDIVKYLRQP 92 
                   5799999999999****99 PP

  == domain 2  score: 12.0 bits;  conditional E-value: 0.00014
  Mg_chelatase  26 llvGppGsGKtmlakrlp 43 
                   ll+GppG+GKt+la++++
    KOO20905.1 107 LLTGPPGTGKTLLARAVA 124
                   89************9875 PP

>> AAA_28  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   0.00018      0.12       3      27 ..     107     132 ..     106     154 .. 0.84

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 0.00018
      AAA_28   3 vitGgestGKTtlleaLa.argypvv 27 
                  +tG+++tGKT l++a a + g+p +
  KOO20905.1 107 LLTGPPGTGKTLLARAVAgEAGVPFF 132
                 58****************54588765 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   0.00017      0.12       3      25 ..     107     131 ..     106     227 .. 0.73

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 0.00017
      AAA_33   3 llvGlpGsGKstlaerllkklg..a 25 
                 ll G+pG+GK+ la+ ++ + g  +
  KOO20905.1 107 LLTGPPGTGKTLLARAVAGEAGvpF 131
                 678***************9998743 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.9   0.0    0.0019       1.3       3      23 ..     106     126 ..     104     144 .. 0.89
   2 ?    2.0   0.0      0.25   1.7e+02      83     114 ..     164     195 ..     146     225 .. 0.83

  Alignments for each domain:
  == domain 1  score: 8.9 bits;  conditional E-value: 0.0019
                 EEEEC-TTTCHHHHHHHHHHH CS
       NACHT   3 vilqGeaGsGKTtLlqklala 23 
                 ++l+G++G GKT L++ +a +
  KOO20905.1 106 CLLTGPPGTGKTLLARAVAGE 126
                 689*************99865 PP

  == domain 2  score: 2.0 bits;  conditional E-value: 0.25
                 EEEEEE-STT-SS-TCH.........HHHHHC CS
       NACHT  83 lLlilDglDelvtdlgqkekqpvrtlLselir 114
                   + +D +D + ++ ++ke+q+++  L++l+ 
  KOO20905.1 164 CIIFIDEIDAIGSHRNPKEQQAMKMTLNQLLV 195
                 45679********9999999999999999985 PP

>> AAA_17  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   0.00019      0.13       1      53 [.     109     162 ..     109     222 .. 0.82
   2 ?   -2.6   0.2       9.6   6.6e+03      43      70 ..     461     489 ..     446     507 .. 0.62

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 0.00019
                 EE-TTSSHHHHHHHHHHHHTEEEEEH.HHHHHHHHHTTTSHSSHHHHCTSHHHH CS
      AAA_17   1 lGgPGsGKgtqceklvekygfthlsa.Gdllreeakrgglakardemrklplee 53 
                 +G+PG GK+ +++ ++ + g++++ + G+ + e+    g+++ r+ +  ++++ 
  KOO20905.1 109 TGPPGTGKTLLARAVAGEAGVPFFYMsGSEFEEVFVGVGAKRVRELFGAAKKRA 162
                 7*********************99886888877777777776666666666555 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 9.6
                 HHHHCTSHHHHHHHHHHHHHHHHHHHH.H CS
      AAA_17  43 rdemrklpleekkelqkeaaekiaeea.k 70 
                 + + rk   e k++l ++a+  ia+e  +
  KOO20905.1 461 ERNARKILTENKEQLHRLAQGLIAHETlN 489
                 44556666677777777777777777632 PP

>> Sigma54_activat  Sigma-54 interaction domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   0.1     0.001      0.69      23      43 ..     104     124 ..      82     224 .. 0.87

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 0.001
                      S-EEEECSTTSSHHHHHHHHH CS
  Sigma54_activat  23 lsvlitGesGtGKellaraih 43 
                        +l+tG  GtGK+llara+ 
       KOO20905.1 104 KGCLLTGPPGTGKTLLARAVA 124
                      568***************985 PP

>> SpoU_sub_bind  RNA 2'-O ribose methyltransferase substrate binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.2   0.0     0.018        12      14      50 ..     135     169 ..     132     173 .. 0.85
   2 ?    3.9   0.1     0.094        65      29      60 ..     450     481 ..     444     486 .. 0.83

  Alignments for each domain:
  == domain 1  score: 6.2 bits;  conditional E-value: 0.018
  SpoU_sub_bind  14 sgrriekllvtegradkrleellklakkrgikvelvd 50 
                    sg+++e+++v  g  +kr++el+ +akkr   ++++d
     KOO20905.1 135 SGSEFEEVFVGVG--AKRVRELFGAAKKRAPCIIFID 169
                    7899*********..99999********976666665 PP

  == domain 2  score: 3.9 bits;  conditional E-value: 0.094
  SpoU_sub_bind  29 dkrleellklakkrgikvelvdkekLdklsgt 60 
                    +++++ ++++a+++  k+ + +ke+L++l+++
     KOO20905.1 450 EAEIKAFVTRAERNARKILTENKEQLHRLAQG 481
                    566789999********************953 PP

>> AAA_14  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   0.00031      0.21       5      76 ..     106     174 ..     103     212 .. 0.75

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 0.00031
      AAA_14   5 lvitGaRrvGKTtllkqlikellvkkesilyinldderdkklad.pekllelileklkeekktylflDEiqev 76 
                 +++tG+  +GKT l++ ++ e       ++y++  + ++       +++ el+ +  k++   ++f+DEi  +
  KOO20905.1 106 CLLTGPPGTGKTLLARAVAGEAG---VPFFYMSGSEFEEVFVGVgAKRVRELFGAA-KKRAPCIIFIDEIDAI 174
                 689****************9999...8899*9999877733332122344555554.4447788******987 PP

>> FtsA  Cell division protein FtsA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.2    0.0007      0.48      27      61 ..     394     446 ..     374     515 .. 0.70

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.0007
                 S--HHHHHHHHHHHHT--HHHHHHHHHHH--S--..................E CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..................x RF
        FtsA  27 gvggngitkdiakalrtaveeAerikikyGsala..................e 61 
                  +g++++t +++  l++a + A ++ +kyG                      +
  KOO20905.1 394 IYGADHVTTGASSDLQQATNMARNMVTKYGMGETlgplyhdrsememlspasR 446
                 4599**************************97766666655555444444431 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   0.4   0.00088      0.61      36      54 ..     106     124 ..      90     142 .. 0.79
   2 ?   -0.3   0.0      0.97   6.7e+02     131     184 ..     152     209 ..     134     212 .. 0.71
   3 ?   -3.1   0.0       7.2     5e+03     108     139 ..     423     455 ..     406     456 .. 0.67

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 0.00088
      AAA_25  36 allaGapgtGKttlaldla 54 
                 +ll+G+pgtGKt la  +a
  KOO20905.1 106 CLLTGPPGTGKTLLARAVA 124
                 79**********9986554 PP

  == domain 2  score: -0.3 bits;  conditional E-value: 0.97
      AAA_25 131 daleaaieevegvrlvviDplsralgg.densnsdv....galvealeriarrtgaavl 184
                 ++l  a++++  +  + iD ++++ ++ +++++ ++    ++l+  ++ ++++ g++vl
  KOO20905.1 152 RELFGAAKKR-APCIIFIDEIDAIGSHrNPKEQQAMkmtlNQLLVEMDGFQQNAGVIVL 209
                 5666667773.488999999999888876666666522456666666777777777776 PP

  == domain 3  score: -3.1 bits;  conditional E-value: 7.2
      AAA_25 108 lagveslpLfakdrggtl.ltadvdaleaaiee 139
                 ++g++  pL++++++++   +a  +a+ea+i++
  KOO20905.1 423 GMGETLGPLYHDRSEMEMlSPASREAIEAEIKA 455
                 444466788888888888557778888888876 PP

>> ATPase  KaiC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.9   0.0    0.0012      0.86      22      37 ..     106     121 ..      80     141 .. 0.86
   2 ?   -0.8   0.0       1.1   7.9e+02     123     156 ..     166     202 ..     149     213 .. 0.64

  Alignments for each domain:
  == domain 1  score: 8.9 bits;  conditional E-value: 0.0012
      ATPase  22 vlitGepGtGKtifal 37 
                  l+tG pGtGKt++a 
  KOO20905.1 106 CLLTGPPGTGKTLLAR 121
                 699**********986 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 1.1
      ATPase 123 vviDsitgl...ayeekeavaReilrqlvrvlkklgv 156
                 + iD i+++    + ++++ ++ +l ql+ ++ + ++
  KOO20905.1 166 IFIDEIDAIgshRNPKEQQAMKMTLNQLLVEMDGFQQ 202
                 5566666664103445556678888888888876655 PP

>> DUF2075  Uncharacterized conserved protein (DUF2075)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.0   0.00043       0.3       4      26 ..     106     133 ..     103     194 .. 0.82

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.00043
     DUF2075   4 vlVtGvaGtGKtvvllnllael.....e 26 
                 +l tG +GtGKt+++ +++ e+      
  KOO20905.1 106 CLLTGPPGTGKTLLARAVAGEAgvpffY 133
                 899************9999887555553 PP

>> V-ATPase_G_2  Vacuolar (H+)-ATPase G subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   4.3     0.002       1.4      22      88 ..     447     513 ..     436     522 .. 0.84

  Alignments for each domain:
  == domain 1  score: 9.4 bits;  conditional E-value: 0.002
                   HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
  V-ATPase_G_2  22 EaArkeaereveaAeaeAarilreAeakakalqaeyeqelaeevarireeararaeaeaqavrkrae 88 
                   Ea   e ++ v +Ae +A++il+e ++++++l++   ++++ +  +i++  + +  + a +v++++ 
    KOO20905.1 447 EAIEAEIKAFVTRAERNARKILTENKEQLHRLAQGLIAHETLNSDEIKQVLEGKPLERAAKVKAAGG 513
                   55566778899***********************999999999999999888888888888888765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (556 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       576  (0.0321267); expected 358.6 (0.02)
Passed bias filter:                      503  (0.0280551); expected 358.6 (0.02)
Passed Vit filter:                        83  (0.00462937); expected 17.9 (0.001)
Passed Fwd filter:                        26  (0.00145016); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              26  [number of targets reported over threshold]
# CPU time: 0.62u 0.29s 00:00:00.90 Elapsed: 00:00:00.43
# Mc/sec: 3902.11
//
Query:       KOO20906.1  [L=535]
Description: protein nlrc3 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    6.4e-26   88.2  37.9    0.00013   21.7   0.2   14.4 15  LRR_6          Leucine Rich repeat
    1.6e-12   46.1   7.4         23    6.1   0.3   11.1 12  LRR_1          Leucine Rich Repeat
    9.2e-08   32.3  16.8         17    6.0   0.0   10.1  9  LRR_4          Leucine Rich repeats (2 copies)
    4.8e-06   26.2  18.5         12    5.8   0.0   10.0 11  LRR_8          Leucine rich repeat
  ------ inclusion threshold ------
      0.065   12.9   2.4         27    4.5   0.0    4.0  4  UPF0181        Uncharacterised protein family (UPF0181)
       0.14   12.1   4.0        2.6    8.1   0.2    3.2  3  MORN           MORN repeat
       0.14   12.4   0.1         93    3.4   0.0    4.4  5  SpoU_sub_bind  RNA 2'-O ribose methyltransferase substrate bi
        2.7    8.1   7.8         14    5.8   0.1    4.3  5  TA_inhibitor   Inhibitor of toxin/antitoxin system (Gp4.5)


Domain annotation for each model (and alignments):
>> LRR_6  Leucine Rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.8   0.3    0.0035       7.9       5      15 ..       4      14 ..       3      16 .. 0.89
   2 ?   -3.1   0.0       5.3   1.2e+04      16      24 .]      26      34 ..      26      34 .. 0.85
   3 !   11.1   0.4   0.00015      0.33       5      19 ..      43      57 ..      40      60 .. 0.93
   4 ?    4.5   0.0      0.02        45       5      18 ..      76      89 ..      75      95 .. 0.83
   5 ?   -0.4   0.1      0.75   1.7e+03       4      11 ..     119     126 ..     119     127 .. 0.87
   6 !   21.7   0.2   5.8e-08   0.00013       5      24 .]     148     167 ..     147     167 .. 0.96
   7 !    8.8   0.0   0.00082       1.8       3      22 ..     176     195 ..     174     197 .. 0.85
   8 !    8.7   0.3   0.00089         2       5      16 ..     206     217 ..     205     219 .. 0.89
   9 !    9.3   0.0   0.00057       1.3       5      24 .]     244     263 ..     243     263 .. 0.94
  10 ?    5.3   0.1     0.011        25       5      16 ..     272     283 ..     271     285 .. 0.88
  11 !    8.0   0.3    0.0014       3.2       5      16 ..     382     393 ..     381     395 .. 0.89
  12 ?   -1.8   0.0       2.1   4.7e+03      16      24 .]     405     413 ..     405     413 .. 0.87
  13 ?    4.1   0.0     0.026        59       5      24 .]     422     441 ..     422     441 .. 0.91
  14 !    6.1   0.0    0.0061        14       1      12 [.     446     457 ..     446     458 .. 0.92
  15 !    8.2   0.0    0.0013       2.9       5      19 ..     490     504 ..     489     507 .. 0.93

  Alignments for each domain:
  == domain 1  score: 6.8 bits;  conditional E-value: 0.0035
       LRR_6  5 LteLdLsgNdI 15
                Lt+L+Ls+N++
  KOO20906.1  4 LTSLNLSSNEL 14
                9********97 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 5.3
       LRR_6 16 gDeGaeaLa 24
                + eG++a+a
  KOO20906.1 26 TAEGITAIA 34
                579****98 PP

  == domain 3  score: 11.1 bits;  conditional E-value: 0.00015
       LRR_6  5 LteLdLsgNdIgDeG 19
                Lt+ ++sgNd++D+G
  KOO20906.1 43 LTSINMSGNDLTDSG 57
                9*************9 PP

  == domain 4  score: 4.5 bits;  conditional E-value: 0.02
       LRR_6  5 LteLdLsgNdIgDe 18
                Lt  d+++N+I ++
  KOO20906.1 76 LTRIDIRHNKIAGD 89
                899********876 PP

  == domain 5  score: -0.4 bits;  conditional E-value: 0.75
       LRR_6   4 hLteLdLs 11 
                 +LteLdL+
  KOO20906.1 119 SLTELDLN 126
                 69****95 PP

  == domain 6  score: 21.7 bits;  conditional E-value: 5.8e-08
       LRR_6   5 LteLdLsgNdIgDeGaeaLa 24 
                 Lt+L+Ls+Nd+ DeG++a +
  KOO20906.1 148 LTALNLSFNDLEDEGVSAVC 167
                 9****************987 PP

  == domain 7  score: 8.8 bits;  conditional E-value: 0.00082
       LRR_6   3 thLteLdLsgNdIgDeGaea 22 
                 t+L +L++++N+Ig  Ga a
  KOO20906.1 176 TKLASLNVTDNGIGPMGANA 195
                 6899**********988755 PP

  == domain 8  score: 8.7 bits;  conditional E-value: 0.00089
       LRR_6   5 LteLdLsgNdIg 16 
                 Lt+LdLs+N++ 
  KOO20906.1 206 LTSLDLSSNQLC 217
                 9*********75 PP

  == domain 9  score: 9.3 bits;  conditional E-value: 0.00057
       LRR_6   5 LteLdLsgNdIgDeGaeaLa 24 
                 Lt+ d+s+N +g eGa+ +a
  KOO20906.1 244 LTKIDVSWNFFGPEGAKVFA 263
                 89**************9876 PP

  == domain 10  score: 5.3 bits;  conditional E-value: 0.011
       LRR_6   5 LteLdLsgNdIg 16 
                 Lt+ +Ls+N++ 
  KOO20906.1 272 LTSINLSDNQLC 283
                 8*********86 PP

  == domain 11  score: 8.0 bits;  conditional E-value: 0.0014
       LRR_6   5 LteLdLsgNdIg 16 
                 Lt+L+Ls+N++ 
  KOO20906.1 382 LTSLNLSYNQLC 393
                 9*********75 PP

  == domain 12  score: -1.8 bits;  conditional E-value: 2.1
       LRR_6  16 gDeGaeaLa 24 
                 + eG++a+a
  KOO20906.1 405 TAEGVTAIA 413
                 579****98 PP

  == domain 13  score: 4.1 bits;  conditional E-value: 0.026
       LRR_6   5 LteLdLsgNdIgDeGaeaLa 24 
                 Lt L+L+ N +g eG +a++
  KOO20906.1 422 LTMLSLAKNRLGEEGTKAIC 441
                 6679************9998 PP

  == domain 14  score: 6.1 bits;  conditional E-value: 0.0061
       LRR_6   1 snthLteLdLsg 12 
                 +n++L++Ld+sg
  KOO20906.1 446 QNQTLKKLDISG 457
                 69********97 PP

  == domain 15  score: 8.2 bits;  conditional E-value: 0.0013
       LRR_6   5 LteLdLsgNdIgDeG 19 
                 Lt++dLs N++++ G
  KOO20906.1 490 LTSVDLSENHLTNRG 504
                 9************99 PP

>> LRR_1  Leucine Rich Repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.2   0.2      0.02        45       2      14 ..       4      16 ..       3      22 .. 0.83
   2 ?    2.9   0.0      0.11   2.4e+02       2      14 ..      43      55 ..      42      70 .. 0.85
   3 ?    2.8   0.0      0.12   2.8e+02       2      17 ..      76      96 ..      75     102 .. 0.73
   4 ?   -1.3   0.1       2.6   5.8e+03       1       8 [.     119     126 ..     119     129 .. 0.85
   5 ?    4.1   0.0     0.045     1e+02       2      18 ..     148     164 ..     147     169 .. 0.82
   6 ?   -1.4   0.0       2.9   6.6e+03       1      12 [.     177     188 ..     177     195 .. 0.82
   7 ?    6.0   0.2     0.011        24       2      15 ..     206     219 ..     205     224 .. 0.86
   8 ?    3.2   0.0     0.091     2e+02       2      12 ..     244     254 ..     243     263 .. 0.83
   9 ?    3.4   0.0     0.075   1.7e+02       2      13 ..     272     283 ..     271     294 .. 0.86
  10 ?    6.1   0.3      0.01        23       2      15 ..     382     395 ..     381     399 .. 0.83
  11 ?   -0.2   0.0       1.2   2.6e+03       2       9 ..     450     457 ..     449     472 .. 0.90
  12 ?    0.7   0.0      0.61   1.4e+03       2      14 ..     490     502 ..     489     514 .. 0.84

  Alignments for each domain:
  == domain 1  score: 5.2 bits;  conditional E-value: 0.02
       LRR_1  2 LrhLdLsnnpllg 14
                L++L+Ls+n l g
  KOO20906.1  4 LTSLNLSSNELCG 16
                89********943 PP

  == domain 2  score: 2.9 bits;  conditional E-value: 0.11
       LRR_1  2 LrhLdLsnnpllg 14
                L+++++s+n l++
  KOO20906.1 43 LTSINMSGNDLTD 55
                89********964 PP

  == domain 3  score: 2.8 bits;  conditional E-value: 0.12
       LRR_1  2 LrhLdLsnnpl.....lglpp 17
                L+++d+++n +     ++l++
  KOO20906.1 76 LTRIDIRHNKIagdvaEQLSA 96
                89*******996666666655 PP

  == domain 4  score: -1.3 bits;  conditional E-value: 2.6
       LRR_1   1 nLrhLdLs 8  
                 +L++LdL+
  KOO20906.1 119 SLTELDLN 126
                 699****7 PP

  == domain 5  score: 4.1 bits;  conditional E-value: 0.045
       LRR_1   2 LrhLdLsnnpllglppn 18 
                 L+ L+Ls n l++ + +
  KOO20906.1 148 LTALNLSFNDLEDEGVS 164
                 889********887665 PP

  == domain 6  score: -1.4 bits;  conditional E-value: 2.9
       LRR_1   1 nLrhLdLsnnpl 12 
                 +L +L++++n +
  KOO20906.1 177 KLASLNVTDNGI 188
                 6779****9986 PP

  == domain 7  score: 6.0 bits;  conditional E-value: 0.011
       LRR_1   2 LrhLdLsnnpllgl 15 
                 L++LdLs+n+l gl
  KOO20906.1 206 LTSLDLSSNQLCGL 219
                 89********9654 PP

  == domain 8  score: 3.2 bits;  conditional E-value: 0.091
       LRR_1   2 LrhLdLsnnpl 12 
                 L+++d+s+n++
  KOO20906.1 244 LTKIDVSWNFF 254
                 899*******8 PP

  == domain 9  score: 3.4 bits;  conditional E-value: 0.075
       LRR_1   2 LrhLdLsnnpll 13 
                 L++++Ls+n+l 
  KOO20906.1 272 LTSINLSDNQLC 283
                 99*******993 PP

  == domain 10  score: 6.1 bits;  conditional E-value: 0.01
       LRR_1   2 LrhLdLsnnpllgl 15 
                 L++L+Ls+n+l gl
  KOO20906.1 382 LTSLNLSYNQLCGL 395
                 89********9544 PP

  == domain 11  score: -0.2 bits;  conditional E-value: 1.2
       LRR_1   2 LrhLdLsn 9  
                 L++Ld+s+
  KOO20906.1 450 LKKLDISG 457
                 9*****86 PP

  == domain 12  score: 0.7 bits;  conditional E-value: 0.61
       LRR_1   2 LrhLdLsnnpllg 14 
                 L++ dLs n+l++
  KOO20906.1 490 LTSVDLSENHLTN 502
                 899******9954 PP

>> LRR_4  Leucine Rich repeats (2 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.6   1.6      0.02        46       3      41 ..       4      55 ..       3      58 .. 0.67
   2 ?    0.3   0.0      0.48   1.1e+03       3      14 ..      76      87 ..      75      97 .. 0.77
   3 ?    0.9   0.0       0.3   6.8e+02      24      31 ..     119     126 ..     107     132 .. 0.75
   4 ?    3.2   0.0     0.056   1.2e+02       3      18 ..     148     163 ..     146     192 .. 0.64
   5 ?    4.9   0.1     0.017        37       3      13 ..     206     216 ..     205     222 .. 0.74
   6 ?    2.3   0.0      0.11   2.5e+02       3      13 ..     272     282 ..     270     285 .. 0.72
   7 ?    3.5   0.3     0.046     1e+02       3      13 ..     382     392 ..     381     396 .. 0.69
   8 !    6.0   0.0    0.0074        17       3      32 ..     422     457 ..     421     460 .. 0.83
   9 ?    2.7   0.0     0.083   1.9e+02       3      14 ..     490     501 ..     489     510 .. 0.82

  Alignments for each domain:
  == domain 1  score: 4.6 bits;  conditional E-value: 0.02
                --EEE--SS-................--E-S-.HHH-TT--EEE-.-S-----GGG CS
       LRR_4  3 LevLdLsnNq................ltdipl.leklpnLkeLdLsgNnlitdlde 41
                L++L+Ls+N                 +t i   l+ +  L+++++sgN    dl++
  KOO20906.1  4 LTSLNLSSNElcgideygngtytaegITAIADaLRVNGGLTSINMSGN----DLTD 55
                788888877667766666667777776655555664556888888888....7765 PP

  == domain 2  score: 0.3 bits;  conditional E-value: 0.48
                --EEE--SS--- CS
       LRR_4  3 LevLdLsnNqlt 14
                L+ +d+++N++ 
  KOO20906.1 76 LTRIDIRHNKIA 87
                788888888886 PP

  == domain 3  score: 0.9 bits;  conditional E-value: 0.3
                 T--EEE-. CS
       LRR_4  24 nLkeLdLs 31 
                 +L+eLdL+
  KOO20906.1 119 SLTELDLN 126
                 56666663 PP

  == domain 4  score: 3.2 bits;  conditional E-value: 0.056
                 --EEE--SS---E-S- CS
       LRR_4   3 LevLdLsnNqltdipl 18 
                 L+ L+Ls N l d + 
  KOO20906.1 148 LTALNLSFNDLEDEGV 163
                 8889999888888666 PP

  == domain 5  score: 4.9 bits;  conditional E-value: 0.017
                 --EEE--SS-- CS
       LRR_4   3 LevLdLsnNql 13 
                 L++LdLs+Nql
  KOO20906.1 206 LTSLDLSSNQL 216
                 77777777775 PP

  == domain 6  score: 2.3 bits;  conditional E-value: 0.11
                 --EEE--SS-- CS
       LRR_4   3 LevLdLsnNql 13 
                 L++++Ls+Nql
  KOO20906.1 272 LTSINLSDNQL 282
                 66777777765 PP

  == domain 7  score: 3.5 bits;  conditional E-value: 0.046
                 --EEE--SS-- CS
       LRR_4   3 LevLdLsnNql 13 
                 L++L+Ls Nql
  KOO20906.1 382 LTSLNLSYNQL 392
                 67777776665 PP

  == domain 8  score: 6.0 bits;  conditional E-value: 0.0074
                 --EEE--SS---E-S-......HHH-TT--EEE-.- CS
       LRR_4   3 LevLdLsnNqltdipl......leklpnLkeLdLsg 32 
                 L+ L+L+ N+l + +       le++  Lk+Ld+sg
  KOO20906.1 422 LTMLSLAKNRLGEEGTkaiceaLEQNQTLKKLDISG 457
                 999*********988888866666788899999987 PP

  == domain 9  score: 2.7 bits;  conditional E-value: 0.083
                 --EEE--SS--- CS
       LRR_4   3 LevLdLsnNqlt 14 
                 L+++dLs N+lt
  KOO20906.1 490 LTSVDLSENHLT 501
                 888888888888 PP

>> LRR_8  Leucine rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.5   0.0    0.0065        15      26      40 ..       3      17 ..       1      20 [. 0.68
   2 ?    1.9   0.0     0.085   1.9e+02      26      37 ..      42      53 ..      30      68 .. 0.63
   3 ?    0.9   0.0      0.18   4.1e+02      27      37 ..      76      86 ..      69      94 .. 0.71
   4 ?   -2.8   0.1       2.5   5.5e+03      50      57 ..     119     126 ..     118     128 .. 0.46
   5 ?    2.2   0.0     0.069   1.5e+02      50      61 .]     147     158 ..     144     160 .. 0.64
   6 !    5.0   0.4    0.0091        20      26      37 ..     205     216 ..     176     220 .. 0.68
   7 ?    3.0   0.0      0.04        89      50      61 .]     271     282 ..     260     285 .. 0.62
   8 !    5.8   0.0    0.0052        12      26      40 ..     381     395 ..     372     401 .. 0.77
   9 ?    0.4   0.1      0.26   5.8e+02      50      61 .]     421     432 ..     412     432 .. 0.64
  10 ?    0.8   0.1      0.19   4.2e+02       3      13 ..     422     432 ..     420     457 .. 0.60
  11 ?    1.9   0.0     0.088     2e+02       3      14 ..     490     501 ..     487     508 .. 0.67

  Alignments for each domain:
  == domain 1  score: 5.5 bits;  conditional E-value: 0.0065
                T--EEE--SS---GG CS
       LRR_8 26 nLkvLdLsnNllttl 40
                +L++L+Ls+N+l  +
  KOO20906.1  3 GLTSLNLSSNELCGI 17
                677788888877555 PP

  == domain 2  score: 1.9 bits;  conditional E-value: 0.085
                T--EEE--SS-- CS
       LRR_8 26 nLkvLdLsnNll 37
                +L+++++s N l
  KOO20906.1 42 GLTSINMSGNDL 53
                455555555555 PP

  == domain 3  score: 0.9 bits;  conditional E-value: 0.18
                --EEE--SS-- CS
       LRR_8 27 LkvLdLsnNll 37
                L+ +d+++N++
  KOO20906.1 76 LTRIDIRHNKI 86
                55555555555 PP

  == domain 4  score: -2.8 bits;  conditional E-value: 2.5
                 S-.EEE-- CS
       LRR_8  50 sLrsLdLs 57 
                 sL++LdL+
  KOO20906.1 119 SLTELDLN 126
                 34444443 PP

  == domain 5  score: 2.2 bits;  conditional E-value: 0.069
                 S-.EEE--SS-- CS
       LRR_8  50 sLrsLdLsgNrL 61 
                  L+ L+Ls N+L
  KOO20906.1 147 GLTALNLSFNDL 158
                 466666666665 PP

  == domain 6  score: 5.0 bits;  conditional E-value: 0.0091
                 T--EEE--SS-- CS
       LRR_8  26 nLkvLdLsnNll 37 
                 +L++LdLs+N+l
  KOO20906.1 205 GLTSLDLSSNQL 216
                 456666666655 PP

  == domain 7  score: 3.0 bits;  conditional E-value: 0.04
                 S-.EEE--SS-- CS
       LRR_8  50 sLrsLdLsgNrL 61 
                 +L+s++Ls+N+L
  KOO20906.1 271 ALTSINLSDNQL 282
                 455555555554 PP

  == domain 8  score: 5.8 bits;  conditional E-value: 0.0052
                 T--EEE--SS---GG CS
       LRR_8  26 nLkvLdLsnNllttl 40 
                 +L++L+Ls+N+l  l
  KOO20906.1 381 GLTSLNLSYNQLCGL 395
                 577888888877555 PP

  == domain 9  score: 0.4 bits;  conditional E-value: 0.26
                 S-.EEE--SS-- CS
       LRR_8  50 sLrsLdLsgNrL 61 
                 +L++L L  NrL
  KOO20906.1 421 ALTMLSLAKNRL 432
                 455666665554 PP

  == domain 10  score: 0.8 bits;  conditional E-value: 0.19
                 -SEEE-TTS-- CS
       LRR_8   3 LtsLdLsnNrl 13 
                 Lt L+L +Nrl
  KOO20906.1 422 LTMLSLAKNRL 432
                 33333333333 PP

  == domain 11  score: 1.9 bits;  conditional E-value: 0.088
                 -SEEE-TTS--S CS
       LRR_8   3 LtsLdLsnNrlt 14 
                 Lts+dLs N+lt
  KOO20906.1 490 LTSVDLSENHLT 501
                 566666666665 PP

>> UPF0181  Uncharacterised protein family (UPF0181)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.5   0.0     0.052   1.2e+02      26      43 ..      22      39 ..      21      41 .. 0.89
   2 ?    4.5   0.0     0.012        27      27      43 ..     225     241 ..     223     246 .. 0.87
   3 ?    2.3   0.0     0.059   1.3e+02      27      43 ..     295     311 ..     292     314 .. 0.88
   4 ?   -1.4   0.1      0.83   1.9e+03      26      43 ..     401     418 ..     400     421 .. 0.87

  Alignments for each domain:
  == domain 1  score: 2.5 bits;  conditional E-value: 0.052
     UPF0181 26 qGmssgeAIalVAqelRe 43
                +G  ++e I  +A++lR 
  KOO20906.1 22 NGTYTAEGITAIADALRV 39
                68889***********95 PP

  == domain 2  score: 4.5 bits;  conditional E-value: 0.012
     UPF0181  27 GmssgeAIalVAqelRe 43 
                 G  s+e I  +A++lR+
  KOO20906.1 225 GTYSAEGITAIADALRN 241
                 888*************7 PP

  == domain 3  score: 2.3 bits;  conditional E-value: 0.059
     UPF0181  27 GmssgeAIalVAqelRe 43 
                 G  ++e I  +A++lR 
  KOO20906.1 295 GTYTAEGITAIADALRV 311
                 7889************6 PP

  == domain 4  score: -1.4 bits;  conditional E-value: 0.83
     UPF0181  26 qGmssgeAIalVAqelRe 43 
                 +G  ++e +  +A+++R 
  KOO20906.1 401 EGTYTAEGVTAIADAMRV 418
                 688899*********995 PP

>> MORN  MORN repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.1       3.3   7.4e+03      12      17 ..      21      26 ..      21      26 .. 0.90
   2 ?    8.1   0.2    0.0011       2.6       3      17 ..     284     298 ..     283     300 .. 0.92
   3 ?    4.0   0.0     0.023        52       8      17 ..     396     405 ..     395     407 .. 0.89

  Alignments for each domain:
  == domain 1  score: -2.7 bits;  conditional E-value: 3.3
        MORN 12 GkGvyt 17
                G+G+yt
  KOO20906.1 21 GNGTYT 26
                89**98 PP

  == domain 2  score: 8.1 bits;  conditional E-value: 0.0011
        MORN   3 GeWknGkrhGkGvyt 17 
                 G W + + +G+G+yt
  KOO20906.1 284 GVWTDHRQCGHGTYT 298
                 88************8 PP

  == domain 3  score: 4.0 bits;  conditional E-value: 0.023
        MORN   8 GkrhGkGvyt 17 
                 ++ hG G+yt
  KOO20906.1 396 DRYHGEGTYT 405
                 679******8 PP

>> SpoU_sub_bind  RNA 2'-O ribose methyltransferase substrate binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.0         1   2.3e+03       3      43 ..      28      71 ..      26      95 .. 0.71
   2 ?    0.2   0.0      0.41   9.3e+02       3      26 ..     161     186 ..     161     197 .. 0.86
   3 ?   -0.5   0.0      0.69   1.5e+03       3      16 ..     230     243 ..     229     270 .. 0.80
   4 ?    0.8   0.0      0.26   5.9e+02       3      44 ..     300     342 ..     298     346 .. 0.62
   5 ?    3.4   0.0     0.041        93       3      21 ..     435     453 ..     435     461 .. 0.87

  Alignments for each domain:
  == domain 1  score: -1.1 bits;  conditional E-value: 1
  SpoU_sub_bind  3 yGlhaVleaLksgrriekllvteg...radkrleellklakkrg 43
                   +G+ a+  aL+ +  ++++  + +   +++++++ + +la+++g
     KOO20906.1 28 EGITAIADALRVNGGLTSINMSGNdltDSGRDMTGIRELAAALG 71
                   88999999999876677776666654444444555555555555 PP

  == domain 2  score: 0.2 bits;  conditional E-value: 0.41
  SpoU_sub_bind   3 yGlhaVleaLksgrr..iekllvteg 26 
                    +G+ aV  a++s+++  + +l vt++
     KOO20906.1 161 EGVSAVCRAIQSNKEtkLASLNVTDN 186
                    79999********8888999988887 PP

  == domain 3  score: -0.5 bits;  conditional E-value: 0.69
  SpoU_sub_bind   3 yGlhaVleaLksgr 16 
                    +G+ a+  aL++g 
     KOO20906.1 230 EGITAIADALRNGA 243
                    89*********984 PP

  == domain 4  score: 0.8 bits;  conditional E-value: 0.26
  SpoU_sub_bind   3 yGlhaVleaLksgrr..iekllvtegradkrleellklakkrgi 44 
                    +G+ a+  aL+ +    ++ ll ++ ++++  + l + ak++gi
     KOO20906.1 300 EGITAIADALRVNGAltVTNLLGNPLDEASA-KMLAEVAKQKGI 342
                    899********98663555555555533333.344555555577 PP

  == domain 5  score: 3.4 bits;  conditional E-value: 0.041
  SpoU_sub_bind   3 yGlhaVleaLksgrriekl 21 
                    +G++a+ eaL++++ ++kl
     KOO20906.1 435 EGTKAICEALEQNQTLKKL 453
                    8************999887 PP

>> TA_inhibitor  Inhibitor of toxin/antitoxin system (Gp4.5)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.0   0.0      0.39   8.7e+02      64      82 ..      26      44 ..      22      51 .. 0.80
   2 ?   -3.5   0.1       4.8   1.1e+04      56      80 ..      69      93 ..      59      97 .. 0.70
   3 ?    3.3   0.0     0.037        82      64      85 ..     298     319 ..     290     323 .. 0.84
   4 ?    5.8   0.1    0.0063        14      64      85 ..     405     426 ..     401     430 .. 0.85
   5 ?   -2.8   0.0         3   6.7e+03      67      81 ..     509     523 ..     496     526 .. 0.81

  Alignments for each domain:
  == domain 1  score: 0.0 bits;  conditional E-value: 0.39
  TA_inhibitor 64 tkaavtaiheagrvneama 82
                  t   +tai +a rvn  ++
    KOO20906.1 26 TAEGITAIADALRVNGGLT 44
                  66789**********8765 PP

  == domain 2  score: -3.5 bits;  conditional E-value: 4.8
  TA_inhibitor 56 alrlvnaltkaavtaiheagrvnea 80
                  al +  alt+  +   + ag v e 
    KOO20906.1 69 ALGVNGALTRIDIRHNKIAGDVAEQ 93
                  4555568888888877788888776 PP

  == domain 3  score: 3.3 bits;  conditional E-value: 0.037
  TA_inhibitor  64 tkaavtaiheagrvneamaild 85 
                   t   +tai +a rvn a+++ +
    KOO20906.1 298 TAEGITAIADALRVNGALTVTN 319
                   66789************99865 PP

  == domain 4  score: 5.8 bits;  conditional E-value: 0.0063
  TA_inhibitor  64 tkaavtaiheagrvneamaild 85 
                   t   vtai +a rvn a+++l 
    KOO20906.1 405 TAEGVTAIADAMRVNGALTMLS 426
                   6678*************99986 PP

  == domain 5  score: -2.8 bits;  conditional E-value: 3
  TA_inhibitor  67 avtaiheagrvneam 81 
                    +tai +a  vn a+
    KOO20906.1 509 GITAIADALCVNGAL 523
                   689999999999887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (535 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       493  (0.0274974); expected 358.6 (0.02)
Passed bias filter:                      386  (0.0215294); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.52u 0.24s 00:00:00.76 Elapsed: 00:00:00.39
# Mc/sec: 4077.65
//
Query:       KOO20907.1  [L=554]
Description: glycosyl hydrolase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.6e-30  104.7   0.0    1.5e-24   86.9   0.0    2.1  2  Cellulase  Cellulase (glycosyl hydrolase family 5)


Domain annotation for each model (and alignments):
>> Cellulase  Cellulase (glycosyl hydrolase family 5)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   86.9   0.0   8.5e-29   1.5e-24      25     202 ..      16     213 ..       5     236 .. 0.82
   2 !   15.6   0.2   4.5e-07    0.0081     229     279 ..     458     515 ..     454     517 .. 0.75

  Alignments for each domain:
  == domain 1  score: 86.9 bits;  conditional E-value: 8.5e-29
                 HHHHHHHHHT-SEEEEEEE...C.......TGGT..TSSTTT.GCTHHHHHHHHHHHHHHHHTT-EEEEEEESS.TTTCSSSSTTTTHHH.....HHHH CS
   Cellulase  25 alidevkdagfntvRlpvs...w.......gelv..enapdy.kvdenslerveevvkyakenglyvildiHse.egwltkadgnssedt.....aeef 104
                 +l + ++d+gfn+vR+p+s   w          +  +++p++ + + + ++ +++ + + +++gl ++l+ H   +gw+ ++d+++ + +     a+ +
  KOO20907.1  16 ELSERIADWGFNCVRMPISidlWykdppvpA--FalAANPELqALGLSGMQLLDKTISALTSAGLLILLNDHTStAGWCCDHDSEEGIWDnpaynATTW 112
                 567899*************555343222221..02345555578889*************************999*******99999888444556666 PP

                 HHHHHHHHHHHHTTTTTTEEEESSSS--STTCT.CCT..CHHHTTHHHHHHHHHHHHHHHHTTSSEEEEECHHHHTBHHHHHCTSG..SSSSTTEEEEE CS
   Cellulase 105 fkklwtqiAerykkndevvifelmNEPhgnntg.aew..tseeadevkayaeeaikaIRavgpnrliivegnswsgnldgavlndP..ndsqdnliysv 198
                 + + + ++A ry+ +  vv+f+l NE h+  t   +w  +s+ ++++k + e+a+  + +v p++l++v g   s +l+   +  P   d  ++l+y+v
  KOO20907.1 113 LLS-VGAVARRYAHDRRVVAFDLRNEIHDTPTRtITWgtSSDIRTDWKVATEAAARELHEVAPEMLVVVSGLCSSYDLRRLHAAPPelPD-PSRLVYTV 209
                 666.899**********************766577899888889***************************6666677776666665423.49****** PP

                 EEET CS
   Cellulase 199 HfYg 202
                 HfY+
  KOO20907.1 210 HFYS 213
                 ***8 PP

  == domain 2  score: 15.6 bits;  conditional E-value: 4.5e-07
                 HHHHHHTTS..EEEEEEEESSTTSSH..HHHHHHHHH...HHHHHHTTTEEEEEEESS CS
   Cellulase 229 akylvekgi..pviigEfGgsnadgd..lakeeaekw...ldylkekgiswiyWslnp 279
                  k+lv+ gi  pv++gEfG++   +d  ++ ++  +w   l+++ke+ + ++yW +n 
  KOO20907.1 458 SKWLVNAGIntPVWLGEFGAGADYDDrkTRGAAGTYWahmLRFMKEYELDFAYWPYNG 515
                 57999999999********984333344333333444666**************9886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (554 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       437  (0.0243739); expected 358.6 (0.02)
Passed bias filter:                      277  (0.0154498); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.21s 00:00:00.69 Elapsed: 00:00:00.36
# Mc/sec: 4578.74
//
Query:       KOO20908.1  [L=441]
Description: 3-oxoacyl [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.6e-53  181.9   5.8    2.4e-53  181.3   5.8    1.3  1  ketoacyl-synt    Beta-ketoacyl synthase, N-terminal domain
    3.9e-31  107.5   0.3    7.3e-31  106.6   0.3    1.5  1  Ketoacyl-synt_C  Beta-ketoacyl synthase, C-terminal domain
     0.0015   17.9   1.6     0.0025   17.2   1.6    1.2  1  Thiolase_N       Thiolase, N-terminal domain


Domain annotation for each model (and alignments):
>> ketoacyl-synt  Beta-ketoacyl synthase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  181.3   5.8     4e-57   2.4e-53       2     251 ..       5     254 ..       4     256 .. 0.87

  Alignments for each domain:
  == domain 1  score: 181.3 bits;  conditional E-value: 4e-57
                    --EEEEEEEEEBTTBSSHHHHHHHHHTT---EEES-TTSSCGTTSBTSSTTEEE-BSS.EEE..S.TTEGGTTSTH.HHHHHHCTS-HHHHHHHHH CS
  ketoacyl-synt   2 epvaivGmgarfPggndveefwelLlegrdaiselpadrwdadklydpparaagkiktklggfld.vddfdpeffg.ispreaeamdpqqrlllea 95 
                    e+++++G+g++ P g++v+++w  Ll+g+ ++++l++ r +++++       a+ ++         + +fdp+  + + p +a+ + p+++++l a
     KOO20908.1   5 ERIVVTGVGIVSPLGVGVRTVWPRLLAGGCGVKRLESLRGQTSEV-------AAPVPRG-----SeDGEFDPARCRlMAPGDAQTIAPFAQFALAA 88 
                    79**********************************766666666.......4444441.....114789998666268999************** PP

                    HHHHHHHHTS-HHTCTTGG.EEEEEEESSTHH....HHHHHHHHHTTGGGSCTTHHHHHSTTHHHHHHHHHHT--SSEEEEESGGGHHHHHHHHHH CS
  ketoacyl-synt  96 awealedagltpeeldgsr.vgvfiGvgagdy....aalaaldedgsevkaspkavgavlanviagrisyalglrGpsvtvdtACsSslvavhaav 186
                    a+eal +a + p++  +++ +gv iG+g+g+     +a ++++e+g ++++s ++v+ +l n++ag++s++ glrGp  ++ tAC++++ av  a 
     KOO20908.1  89 AAEALDSARWAPATDAERErTGVAIGSGIGSLadivDASDTMRERG-PRRVSAYFVPRMLVNMAAGHVSIRAGLRGPLSCPATACATGASAVSDAA 183
                    **********9988755556**********7744555555666555.9************************************************ PP

                    HHHHTTS-SEEEEEEEE---SHHHHHHHHHTTBB-TT...SGGGTTBTTB...-SB-BB-EEEEEEEEECH CS
  ketoacyl-synt 187 qslrsgeadvalaGGvellltpeavagfsaagllspd...grckafdpka...dGfvlGEGvGavvLkrle 251
                      l+sg adv+laGG+e++++p a+agf +++++s+     +++a++p++   dGfv+GEG++++vL+++ 
     KOO20908.1 184 LLLMSGAADVMLAGGAEACIEPLAIAGFGKLRAVSTAynaSPERASRPFDagrDGFVMGEGAAVLVLETEG 254
                    ********************************666665888888888888888**************9875 PP

>> Ketoacyl-synt_C  Beta-ketoacyl synthase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  106.6   0.3   1.2e-34   7.3e-31       1     117 [.     264     382 ..     264     383 .. 0.96

  Alignments for each domain:
  == domain 1  score: 106.6 bits;  conditional E-value: 1.2e-34
                      SEEEEEEEEEE--STSSSTSTTHHHHHHHHHHHHHHHT--.GGGEEEEE-SS-SSHHHHHHHHHHHHHHHGGGGG.SCTSEEE-THHHH-B-GG CS
  Ketoacyl-synt_C   1 yavikgsavnsdgahnsltapngeaqaraiekalaeagvd.pedvdyveahgtgtplgDpiElealkkvfgekar.kqplavgSvKsniGHlea 92 
                      +a++ g++++ d++h++++  ng+++ r ++ al++a+ +    vdyv+ah+t+tp+gD++El+a++++ +++   + pl v+++K  +GHl++
       KOO20908.1 264 LAELCGFGLSADAHHITAPPDNGAGALRTMRTALRMAEACgHPFVDYVNAHATSTPQGDAAELRAISALAADRPAgSLPLLVSATKGATGHLLG 357
                      69999*********************************994557****************************999999**************** PP

                      GHHHHHHHHHHHHHHHTEE--BTT- CS
  Ketoacyl-synt_C  93 AaGvaelikvvlalkhgvipptlnl 117
                      +aG++e++ +vlal+h+v+ppt+nl
       KOO20908.1 358 GAGALEAAFTVLALHHQVLPPTINL 382
                      ************************8 PP

>> Thiolase_N  Thiolase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   1.6   4.2e-07    0.0025      83     113 ..     170     200 ..     148     203 .. 0.85

  Alignments for each domain:
  == domain 1  score: 17.2 bits;  conditional E-value: 4.2e-07
                 HGGGHHHHHHHHHHHHHHTTSHSEEEEEEEE CS
  Thiolase_N  83 kvcsSglkavalaaqsiaageadvvvagGvE 113
                  +c+ g++av +aa  +++g+adv++agG+E
  KOO20908.1 170 TACATGASAVSDAALLLMSGAADVMLAGGAE 200
                 68****************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (441 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       217  (0.0121033); expected 358.6 (0.02)
Passed bias filter:                      158  (0.00881254); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.42u 0.25s 00:00:00.67 Elapsed: 00:00:00.37
# Mc/sec: 3526.51
//
Query:       KOO20909.1  [L=159]
Description: hypothetical protein Ctob_001654 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.2e-18   67.2   0.0    1.8e-18   66.7   0.0    1.2  1  FKBP_C    FKBP-type peptidyl-prolyl cis-trans isomerase
    5.6e-09   36.9   0.0    1.6e-08   35.4   0.0    1.6  2  FKBP_N    Domain amino terminal to FKBP-type peptidyl-prolyl 


Domain annotation for each model (and alignments):
>> FKBP_C  FKBP-type peptidyl-prolyl cis-trans isomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.7   0.0     2e-22   1.8e-18      11      94 .]      63     147 ..      54     147 .. 0.94

  Alignments for each domain:
  == domain 1  score: 66.7 bits;  conditional E-value: 2e-22
                 EEEEEEEEET.T...SSEEEEHCCHTSEEEEETTSSSSCHHHHHHHTTSBTT-EEEEEEEGGGTTTTTTBCTTTB.TTSEEEEEEEEE CS
      FKBP_C  11 Vtvhykgkle.d...gkvfdssrsrakplefkvGsgqvikGfeealegmkvGekrtltippelaYgekglaggvippnatLvFeveLl 94 
                 +++hy+g+ + +   g vfdss+ r++p +f  +  qvikG+ ea++ m  G+k++l ip++laYg++g  +++i ++  L+F++e+l
  KOO20909.1  63 CECHYEGRTAaNypsGPVFDSSYARGQPSTFAPN--QVIKGWTEAMQLMVEGDKWELYIPSDLAYGDRGR-PPKIGGGDCLIFTIEIL 147
                 579******877888****************988..8*********************************.889************86 PP

>> FKBP_N  Domain amino terminal to FKBP-type peptidyl-prolyl isomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.4   0.0   1.7e-12   1.6e-08      68      97 .]      18      47 ..      12      47 .. 0.93
   2 ?   -1.8   0.0       0.7   6.2e+03      19      37 ..      89     107 ..      72     112 .. 0.74

  Alignments for each domain:
  == domain 1  score: 35.4 bits;  conditional E-value: 1.7e-12
      FKBP_N 68 knkaegeaFlaenkkkeGVkttesGLqYkV 97
                ++ ++g aFla+nk+k+GV+t++sGLqYkV
  KOO20909.1 18 ATNEAGLAFLAANKEKPGVVTLASGLQYKV 47
                67899************************9 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 0.7
      FKBP_N  19 qgkeldkdavlaGlkdalk 37 
                 q +++  ++v++G ++a++
  KOO20909.1  89 QPSTFAPNQVIKGWTEAMQ 107
                 4556777888888888875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (159 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       322  (0.0179597); expected 358.6 (0.02)
Passed bias filter:                      294  (0.016398); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.35u 0.22s 00:00:00.56 Elapsed: 00:00:00.35
# Mc/sec: 1351.79
//
Query:       KOO20910.1  [L=512]
Description: hypothetical protein Ctob_001655 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.9e-13   51.1   0.0    3.4e-13   50.3   0.0    1.4  1  2OG-FeII_Oxy_3  2OG-Fe(II) oxygenase superfamily
      2e-09   37.8  15.1    3.5e-06   27.4   2.3    3.2  3  ShK             ShK domain-like
    2.8e-09   36.9   2.1    6.7e-09   35.7   2.1    1.7  1  WW              WW domain


Domain annotation for each model (and alignments):
>> 2OG-FeII_Oxy_3  2OG-Fe(II) oxygenase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.3   0.0   5.6e-17   3.4e-13      10      96 .]     402     497 ..     386     497 .. 0.86

  Alignments for each domain:
  == domain 1  score: 50.3 bits;  conditional E-value: 5.6e-17
                     -EEEEE-SS--..--TT.-.EEEEEEEEE.....ET-B--EEE..........---TT-EEEEE-..B-T..........EEE--B.-SS-EEEE CS
  2OG-FeII_Oxy_3  10 qeykpHvDnfe..keegsgqrrltvllyLne.keseeGGelelyekdkeavkikpkkgrlvlFesdellp..........HevlpvtkggeRlsl 91 
                      +yk+H D+++  +++ +g r++t+++yLn+ +e   GG  ++  + k+ v++kp+kg++vl++s    +          He+lpv  g e++ +
      KOO20910.1 402 AFYKRHSDYIDgdRHRVQGVRIYTMFMYLNDlPEG-AGGGTKF-TDLKPPVTFKPEKGKAVLWPSVLA-DapnnidtrthHEALPVLLG-EKYGA 492
                     58*********986667799**********95555.8888999.333489999************544.26***************775.***** PP

                     EEEEE CS
  2OG-FeII_Oxy_3  92 tgwir 96 
                     ++wi+
      KOO20910.1 493 NFWIH 497
                     ***98 PP

>> ShK  ShK domain-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.4   2.3   5.9e-10   3.5e-06       7      36 ..     164     191 ..     161     192 .. 0.93
   2 !   18.0   1.0   5.2e-07    0.0031       7      35 ..     212     238 ..     205     239 .. 0.89
   3 ?   -1.2   0.2      0.52   3.1e+03       2      14 ..     393     406 ..     392     407 .. 0.69

  Alignments for each domain:
  == domain 1  score: 27.4 bits;  conditional E-value: 5.9e-10
         ShK   7 sdCaswaalgfCtnptyrdlmkeqCpktCg 36 
                   Ca wa++g+Ct ++  ++m++ C  tC 
  KOO20910.1 164 KECAGWAKQGECTANP--EFMRAKCKVTCE 191
                 68**************..***********6 PP

  == domain 2  score: 18.0 bits;  conditional E-value: 5.2e-07
         ShK   7 sdCaswaalgfCtnptyrdlmkeqCpktC 35 
                 + C +waa g+C+ ++   +m   C+++C
  KOO20910.1 212 GECIAWAASGECEINK--GFMYRSCAYSC 238
                 78***********999..*********** PP

  == domain 3  score: -1.2 bits;  conditional E-value: 0.52
         ShK   2 Ct.DpssdCaswaa 14 
                 C   ++++Ca++++
  KOO20910.1 393 CPsERDPSCAFYKR 406
                 55334599*99986 PP

>> WW  WW domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.7   2.1   1.1e-12   6.7e-09       1      31 []     104     134 ..     104     134 .. 0.98

  Alignments for each domain:
  == domain 1  score: 35.7 bits;  conditional E-value: 1.1e-12
                 X-TTEEEEE-TTTT-EEEEETTT--EESS-- CS
          WW   1 LPpGWeeqwdpdsGrvYYyNheTgetqWekP 31 
                 LP GW  ++dp+sG++YY+ + T+etqWe P
  KOO20910.1 104 LPQGWGSATDPTSGKTYYFKTATRETQWEFP 134
                 8****************************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (512 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       529  (0.0295053); expected 358.6 (0.02)
Passed bias filter:                      370  (0.020637); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.49u 0.21s 00:00:00.70 Elapsed: 00:00:00.37
# Mc/sec: 4193.97
//
Query:       KOO20911.1  [L=525]
Description: hypothetical protein Ctob_001651 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.37   11.1   5.2       0.87    9.9   5.2    1.6  1  DUF4164   Domain of unknown function (DUF4164)


Domain annotation for each model (and alignments):
>> DUF4164  Domain of unknown function (DUF4164)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   5.2   4.9e-05      0.87      18      55 ..     108     145 ..     106     172 .. 0.88

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 4.9e-05
     DUF4164  18 dsLEkavdrrleaerkrdeleaeiealgedrsRLaeeL 55 
                 d+LE+  +rrleaer+ + l++e+  l+++ sRL e +
  KOO20911.1 108 DELEAERERRLEAERESRRLQSEVWSLKAEVSRLHEMM 145
                 89********************************8754 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (525 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       990  (0.0552178); expected 358.6 (0.02)
Passed bias filter:                      554  (0.0308997); expected 358.6 (0.02)
Passed Vit filter:                        60  (0.00334653); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.59u 0.25s 00:00:00.84 Elapsed: 00:00:00.41
# Mc/sec: 3845.46
//
Query:       KOO20912.1  [L=4557]
Description: flagellar outer dynein arm heavy chain beta [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
   4.3e-177  590.2   1.3   4.3e-177  590.2   1.3    2.4  2  DHC_N1          Dynein heavy chain, N-terminal region 1
   5.7e-132  439.6   0.0   5.3e-131  436.4   0.0    2.6  2  AAA_6           Hydrolytic ATP binding site of dynein motor r
   1.2e-104  350.6   3.8   1.2e-104  350.6   3.8    4.0  4  DHC_N2          Dynein heavy chain, N-terminal region 2
     2e-101  338.7   0.2   6.2e-101  337.1   0.0    2.0  2  AAA_8           P-loop containing dynein motor region D4
    8.2e-89  297.8   0.0      5e-88  295.3   0.0    2.3  2  Dynein_C        Dynein heavy chain C-terminal domain
    4.5e-79  266.0  13.0    9.4e-79  264.9  13.0    1.6  1  MT              Microtubule-binding stalk of dynein motor
    1.2e-69  233.9   0.0    3.3e-69  232.4   0.0    1.9  1  AAA_9           ATP-binding dynein motor region
      5e-64  215.1   3.9    1.8e-60  203.5   0.1    4.6  4  AAA_7           P-loop containing dynein motor region
    1.5e-43  148.4   0.0    3.4e-43  147.3   0.0    1.7  1  AAA_lid_11      Dynein heavy chain AAA lid domain
    7.1e-35  119.7   0.0    2.7e-34  117.8   0.0    2.1  1  Dynein_heavy    Dynein heavy chain region D6 P-loop domain
    3.6e-27   94.5   0.1    1.3e-26   92.7   0.1    2.1  1  AAA_lid_1       AAA+ lid domain
      6e-20   71.6   0.2    2.3e-19   69.7   0.2    2.2  1  Dynein_AAA_lid  Dynein heavy chain AAA lid domain
    5.6e-12   45.8   0.0     0.0045   17.0   0.0    5.3  4  AAA_5           AAA domain (dynein-related subfamily)
    0.00032   21.0   0.0         22    5.3   0.0    4.4  4  AAA_22          AAA domain
     0.0089   16.5   0.6        7.8    6.9   0.0    3.9  3  AAA             ATPase family associated with various cellula
  ------ inclusion threshold ------
       0.05   14.2   0.2         21    5.7   0.0    4.2  4  AAA_18          AAA domain
       0.16   12.3   5.2       0.73   10.2   0.0    3.6  3  AAA_19          AAA domain
        1.6    8.4  11.3         11    5.7   0.1    4.4  4  AAA_30          AAA domain
        5.5    7.1   6.3         46    4.1   2.5    3.1  2  Nup54           Nucleoporin complex subunit 54


Domain annotation for each model (and alignments):
>> DHC_N1  Dynein heavy chain, N-terminal region 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  590.2   1.3  4.5e-180  4.3e-177       1     562 []     196     775 ..     196     775 .. 0.98
   2 ?   -3.6   0.3       3.4   3.2e+03     242     286 ..    1253    1291 ..    1201    1295 .. 0.50

  Alignments for each domain:
  == domain 1  score: 590.2 bits;  conditional E-value: 4.5e-180
      DHC_N1   1 vnaleslvieWikqIkevlkedsd.....grkegplaEieFWrsreanLssieeqlkspevkkvlkvLkaakssyleafkaldtelkkaleeAkdnvky 94 
                 v+ le++v +W+kqIk+vlk d++     g ++gp+aE+eFW+++++ L+si++ql  ++++kv+kvL+ +ks+y+++f++l++e+ +a+eeA+dn ky
  KOO20912.1 196 VHVLETAVVTWTKQIKNVLKLDPEqmlkgGTHPGPMAELEFWAAKARHLNSIQQQLGGERIRKVMKVLDLTKSTYCSPFNRLMKEVAAACEEANDNTKY 294
                 688********************99***999******************************************************************** PP

      DHC_N1  95 LktLekpledLes....t.dleeikellpsllnairliwkiSryYntperivsLlekisnqlieqckkylnpeelfgqeveeaikklkeaielleawke 188
                 L tL+  l++L++    +  ++++++l++++++ i l+wk+Sr+Yn+p+r+v+L+++i+n+li q++++lnp+elf+ e++ea++kl  +++++ ++k+
  KOO20912.1 295 LATLKTALQKLSEividAeAFQNLTHLFRPIVHLIMLVWKHSRFYNSPARLVVLMREICNDLIAQARSFLNPQELFQMEPQEAVDKLMVTLKVCGQFKS 393
                 *********98888888779********************************************************889******************** PP

      DHC_N1 189 eyeektrekleespkekpwefdeksiFarldafleRlekllelfetieqfsklekv..ggtkgkelegqieeileefeeaveklksksydvLdvsaeef 285
                  y+ +++++ +++   +pw+++++s+F rld+fleR+++ll+lf+t  qf+kle++  gg+kg++l++++ +i+++f+ + ek+ +++ydvLdv+ ++f
  KOO20912.1 394 VYF-DYKSRANNEVPSNPWRLQNTSLFPRLDSFLERCHDLLDLFKTFVQFMKLERIeiGGNKGRTLSASVVQIYADFKAVAEKFIQVPYDVLDVEVKKF 491
                 **6.*******9999*******************************************9**************************************** PP

      DHC_N1 286 eadfkeFkerikdlerrlqaiinqafedasslesalellrkfesllerpkikaaleekytdllqmykeeleavkklfekqkenps.........aplak 375
                 ++df  F+ +ik+lerrl++++nq f+d+ ++ +a++l+++fe+ller+ i+a+le+k+ dll+ y+++l+ v++++++qk++           +pl+ 
  KOO20912.1 492 DDDFYVFRCSIKELERRLGSVLNQGFDDCATVFAAFKLIESFEGLLEREFIQADLERKHLDLLKAYSSDLRDVQDIYTRQKDQSAvgfyleregPPLYC 590
                 *******************************************************************************9999778999999******* PP

      DHC_N1 376 nmPpvaGaiiwarqlerrieepmekfeeegegllkteegkkvkkkynelakkLkeyerklfeeWleeveekseeklkrpLLvredettkllevNFdpel 474
                 nmPpvaGai+w++ l+ rieepm k+++  + +l++ee+k+v+k+y +l ++L++y ++++++W + ve+ s+++lk+p+L+r d ++ ll vNFdpel
  KOO20912.1 591 NMPPVAGAIYWVKGLKLRIEEPMFKLKATLKTMLESEEAKDVMKTYGNLIEALDKYAHEVHSSWEKGVEDVSQANLKNPILRR-D-EKGLLAVNFDPEL 687
                 ***************************977*****************************************************.4.799999******* PP

      DHC_N1 475 lallrEvkylqrlgfevPesakniakqeeklrkyaesLellvreynrilesllpverpLlaeelkeldaklepGltklnWnslgieeY 562
                 ++llrEvkyl  lg   P sa ++ k++e++r ++  L+ + ++yn+i++++l+ve+pLla +lk +d++le+G ++l+W+s+gi+++
  KOO20912.1 688 IRLLREVKYLLELGKGAPASALELNKKAETYRVQRGCLQVISDKYNHIMHTMLEVEQPLLAAQLKMIDRALEKGQKNLTWKSHGIDDF 775
                 **************99**********************************************************************98 PP

  == domain 2  score: -3.6 bits;  conditional E-value: 3.4
      DHC_N1  242 ekvggtkgkelegqieeileefeeaveklksksydvLdvsaeefe 286 
                  e++  +k+ e +++i++i++    a + l+  +  ++dv++e+++
  KOO20912.1 1253 EDCY-KKVDEWNTKIDQIEN----AAKSLQ-ERQGLFDVNKENWK 1291
                  2222.233334444444444....555555.23356777777776 PP

>> AAA_6  Hydrolytic ATP binding site of dynein motor region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  436.4   0.0  5.6e-134  5.3e-131       1     327 []    1834    2173 ..    1834    2173 .. 0.95
   2 ?   -1.0   0.0      0.73   6.9e+02     186     249 ..    3737    3801 ..    3725    3856 .. 0.72

  Alignments for each domain:
  == domain 1  score: 436.4 bits;  conditional E-value: 5.6e-134
       AAA_6    1 YgyeYlgnserLviTpltdrcyltltqAlklklggapaGpagtGKtEtvkdLakalakqvvvfncsdqldykslgkifkGlaqsGaWgCfdeFnrie 97  
                  Y+yeY+gn +rLviT ltdrcy+tltqAl+l lggapaGpagtGKtEt+kdL++ la +v+v+ncsdq++yk++++if Gl+q+GaWgCfdeFnri 
  KOO20912.1 1834 YSYEYVGNPGRLVITGLTDRCYITLTQALRLCLGGAPAGPAGTGKTETTKDLGRGLAIWVIVMNCSDQMNYKTMANIFMGLSQTGAWGCFDEFNRIP 1930
                  9************************************************************************************************ PP

       AAA_6   98 levLSvvaqqiktiqqalkekkkkfvfegkeiklnksvgifitmnpgyagrteLPdnLkalfRpvammvPdlelIaeimLfseGfkeakelakklvt 194 
                  +evLSvva q  ++++ +k+ ++ ++fe+++i+l+++vg+fitmnpgyagrteLP+nLkalfR vam++Pd++ I+ei+L +eGf++ak l+ k++ 
  KOO20912.1 1931 VEVLSVVAGQYGALLDGIKAVADDIIFEEEKIALKRTVGAFITMNPGYAGRTELPENLKALFRGVAMCTPDFAAIIEIELSAEGFETAKVLSIKFIR 2027
                  ************************************************************************************************* PP

       AAA_6  195 lykllseqlskqdhydfglralksvlkaagelkreepeeseeelllralrdvnlpklvaeDvplfkglisdlFpgv.elpesdyeeleeaieevlke 290 
                  l++l  e lskqdhyd+glra+k +l++ag +kr++pe +e e+++ralrd+n+ k+v++Dv +f gl++d+Fp++ +++++ +  +++a+++vlke
  KOO20912.1 2028 LFQLNMELLSKQDHYDWGLRAIKGILRIAGGAKRANPERTELEIMMRALRDSNVTKFVNADVGIFLGLVNDIFPKMqDATKQADPIMTKAVRDVLKE 2124
                  ***************************************************************************9667778888999999999987 PP

       AAA_6  291 k............klqleekfvekviqlyetlkvrhgvmlvGetgsgKt 327 
                  +            +lq+e+ fv k+++l e+l +rh+v+ +G +gsgKt
  KOO20912.1 2125 NkvfikngyqeglQLQPEDIFVGKTVDLAELLGIRHCVFALGCAGSGKT 2173
                  63333333333224678999****************************8 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 0.73
       AAA_6  186 kelakklvtlykllseqlskqdhydfglralksvlkaa.gelkreepeeseeelllralrdvnlp 249 
                  + l+++   ++ l+++ +   + y+f+l +++ +   a  ++k+++   +  + l+ ++  v ++
  KOO20912.1 3737 RPLGERGALMFFLVNQLFVISHMYQFSLDTFNYMFLKAiSKTKKSNDIDDRFKNLMATISFVIFA 3801
                  567777888999999999999*********99875555055577666566667777777666554 PP

>> DHC_N2  Dynein heavy chain, N-terminal region 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.1         1   9.7e+02      91     162 ..     240     314 ..     191     359 .. 0.63
   2 ?    3.5   0.4     0.033        31      15      85 ..    1198    1272 ..    1185    1294 .. 0.76
   3 !  350.6   3.8  1.3e-107  1.2e-104       2     394 ..    1294    1697 ..    1293    1700 .. 0.95
   4 ?   -3.6   0.0       4.8   4.5e+03     253     279 ..    2259    2285 ..    2258    2293 .. 0.83

  Alignments for each domain:
  == domain 1  score: -1.4 bits;  conditional E-value: 1
                 XXXXXXXXXXXX..XXXXXXXX.XXXXXXXXXXX...X...XXXXXXXXXXXXX-HHHHHHHHHHHHHHTS---EEEE CS
      DHC_N2  91 rerHwkelsellgvikdpdseesltlgdllelgl...l...eeeieeisekAtkEaslekalkkieeewkelefelte 162
                 + rH + ++++lg  +++  ++ +++ dl ++     +   ++e+   +e+A+   +   +lk   ++ +e+ ++ ++
  KOO20912.1 240 KARHLNSIQQQLGG-ERI--RKVMKVLDLTKSTYcspFnrlMKEVAAACEEANDNTKYLATLKTALQKLSEIVIDAEA 314
                 56666667666663.221..1234444444443333323335555555666655555555555544444444444444 PP

  == domain 2  score: 3.5 bits;  conditional E-value: 0.033
                  XXXXXXXXXXXXXX.....XXXXXXXXXXXXXXXXXXXXXXXXXXXX.....XXXXXXXXXXXXXXXXXXXXXXXX CS
      DHC_N2   15 wdlvsewqekleewkktpfkeldveeleeevkellkklkklpkalke.....wevakelkekieefkevlplieel 85  
                  w+++  ++ + +e +  p+++l++e+++e+++e+  k+ ++  ++ke     ++v ++  +k++e+++ ++ ie+ 
  KOO20912.1 1198 WNATTRITYNSRE-QLAPLQSLQAEKIKEQAEEFGHKVVEFRADFKEeapfnYSVGEDCYKKVDEWNTKIDQIENA 1272
                  5555555433333.237999******************99999999999999888888888888888888777654 PP

  == domain 3  score: 350.6 bits;  conditional E-value: 1.3e-107
                  XXXXXXXXXXXXXXXXXXXXXXXXXXX.....XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
      DHC_N2    2 eeikkelellkklwdlvsewqekleewkktpfkeldveeleeevkellkklkklpkalkewevakelkekieefkevlplieelrnpalrerHwkel 98  
                  + +++el+llkk+wd v+ +++ +++wk t + +++v+++   +++++k++k l++ ++ w+++  +++++ +++  lpl+++lr +a+rerHwk+l
  KOO20912.1 1294 KVCRDELKLLKKVWDHVELVNSIFNSWKATLWPDVNVDSMMIMCSKIQKEIKALDRPVRGWDCYLGMMKEMADMLIDLPLVQDLRDDAMRERHWKKL 1390
                  56899******************************************************************************************** PP

                  XXXX...XXXXXXXX.XXXXXXXXXXX..XXXXXXXXXXXXXX-HHHHHHHHHHHHHHTS---EEEE-SSS.TEEE..THHHHHHHHHHHHHHHHTC CS
      DHC_N2   99 sellgv.ikdpdseesltlgdllelgl..leeeieeisekAtkEaslekalkkieeewkelefelteykdsgvfilkgvdeiielledhivklqsmk 192 
                  ++++g+ +     +++++lg ll+l+l  +++ + e++e+A+ E ++ kal++ie+ w++l+fe++++k+sgv++lk  d  ie+l+dh v+lq+m+
  KOO20912.1 1391 MRICGKtF---VMDDKMSLGVLLSLELhkFADPVGEVVEQARMEIKIDKALQRIETIWNALQFEYEPFKSSGVKVLKMPDTTIESLDDHEVQLQNMM 1484
                  ****9543...44567***********655******************************************************************* PP

                  SSSTT..THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT.T.HHHHHHTHHHHHHHHHHHHHHHHHHHHHHTTSGGGG...STTHHHHHHHHH CS
      DHC_N2  193 sspyvkpfeeeveewekklsrlqeildewlkvQrkWlyLepifss.edirkqlpeeakrFksvdkewkkimkevskdpnvleatskpgllekleeln 288 
                  ++++ ++fe ++++w+ kls+++ +l++wl+vQr+W  Le+if + edir+qlpe+akrF+ +d ++k+ m ++ +++n l+at k+g+ e ++ + 
  KOO20912.1 1485 GNRFKAFFEIQITTWKGKLSQCRAVLENWLEVQRQWCSLEAIFIGsEDIREQLPEDAKRFDGIDASFKEQMADACNSTNPLDATLKDGRDEAFKVAL 1581
                  *****99**************************************77*****************************99*****999*********** PP

                  HHHHHHHHHHHHHHHHHHHHSTTHHHH-HHHHHHHHHTTTTSGGGHHHHHHHHSSEEEESE............EEEEEETTS-EEEEE.....E.EE CS
      DHC_N2  289 eqlekiqksLneyLekkRlafpRFyFlsddeLleilsqskdpsavqphlkkcFegiaslefee.......kkeitgmiskegEkvelse...argnv 375 
                    le +++sL++yLe+kR++fpRFyF+s  +L++ ls++k p avq+h++k  + i  +  e+       +  ++gm+  ++E+v++ +   +rg+v
  KOO20912.1 1582 AALELCNRSLSDYLETKRRKFPRFYFISQVDLVDTLSKGKFPPAVQEHFSKFTDCIGGIMWERdpetkleTGVCKGMFATDKEEVHFAKeldCRGPV 1678
                  ***********************************************************7777777788677888*************99******* PP

                  EHHHHHHHHHHHHHHHHHH CS
      DHC_N2  376 eeWLneleeemkktlkell 394 
                  e+WL+e+      + k++l
  KOO20912.1 1679 EDWLKEIMVHCNMQFKDQL 1697
                  ******9888877777776 PP

  == domain 4  score: -3.6 bits;  conditional E-value: 4.8
                  HHHHHHHHHHHHHHTTSGGGG...STT CS
      DHC_N2  253 svdkewkkimkevskdpnvleatskpg 279 
                  ++d ew + m+ v +d++vl+++s+++
  KOO20912.1 2259 DIDAEWIESMNTVMDDNKVLTLVSNER 2285
                  699************999*99977665 PP

>> AAA_8  P-loop containing dynein motor region D4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.3       4.3     4e+03     189     242 ..    1728    1781 ..    1675    1785 .. 0.74
   2 !  337.1   0.0  6.5e-104  6.2e-101       1     260 []    2835    3094 ..    2835    3094 .. 1.00

  Alignments for each domain:
  == domain 1  score: -3.2 bits;  conditional E-value: 4.3
       AAA_8  189 eWPeeaLleVaekvleeeeeieeelkesivkvlvevhssveelsekfleelkrk 242 
                   W +e +++  +    +++ ++e +  +i+++ v+v++   e++ ++ +++k  
  KOO20912.1 1728 WWSTEVYQAFDRLEQGNDQGMKEYSVAQIANLNVYVQMVLGEMTGEMRTKVKTL 1781
                  356666665444333347788888899999999999999999999999988865 PP

  == domain 2  score: 337.1 bits;  conditional E-value: 6.5e-104
       AAA_8    1 ldLvlfedaiehlarilRvlrqprghaLlvGvgGsGrqsltkLAafiaelelfqievtkkykekefredlkkllkkagikqkevvfllsdnqiiees 97  
                  +dLvlf +a+eh++ri+R++++prg+aLlvGvgGsG+qslt+LAafi+++++fqi++t+ y++ +f+ d+  l+ ++g+k++++v+l++d+qii+e 
  KOO20912.1 2835 MDLVLFVQAMEHVSRISRIIDTPRGNALLVGVGGSGKQSLTRLAAFISGFTVFQIKLTSAYGMIDFKADIAALYASTGLKGNSIVWLFTDQQIINER 2931
                  99*********************************************************************************************** PP

       AAA_8   98 fledinnlLntGevpnLfskeekeeiieelrkeakkqgvedskesllnffikrvrenLhivlcmspvgeafrsrlrkfpsLvncttidwfqeWPeea 194 
                  +l + n+lL++G +p+L+++++k+++++ +r e+k++g  ds++ ++nff++rvr+nLh+vlcmspvg+afr+r+rkfp+L++ t+idwf++WP+ea
  KOO20912.1 2932 MLIYFNDLLSSGFIPDLYTQDDKDNVLNGIRPEVKAAGLMDSPDICWNFFLDRVRKNLHVVLCMSPVGNAFRNRCRKFPALISATVIDWFHPWPSEA 3028
                  ************************************************************************************************* PP

       AAA_8  195 LleVaekvleeeeeieeelkesivkvlvevhssveelsekfleelkrkiyvtpksylellktykkl 260 
                  L +Va ++l+++   ++elke++++++++vh+svee+++++l+  +r++y+tpksylel+++y++l
  KOO20912.1 3029 LISVAMRFLQDVDISTDELKENVAHHMSFVHQSVEECCTTYLAAERRNVYTTPKSYLELIQLYQTL 3094
                  ***************************************************************987 PP

>> Dynein_C  Dynein heavy chain C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.0       1.1     1e+03     208     235 ..    3395    3422 ..    3352    3437 .. 0.68
   2 !  295.3   0.0   5.3e-91     5e-88       2     307 .]    4251    4552 ..    4250    4552 .. 0.93

  Alignments for each domain:
  == domain 1  score: -1.3 bits;  conditional E-value: 1.1
                  .-EEE-SEEEESSEE..ETTCEE-SS.. CS
    Dynein_C  208 dGvyihGLfleGarwdkkegvLaesepk 235 
                     +++GL  eG rw  + + L e++ +
  KOO20912.1 3395 AERLVNGLKDEGVRWAANVELLGEEKAM 3422
                  35689**********9999999987755 PP

  == domain 2  score: 295.3 bits;  conditional E-value: 5.3e-91
                  HHHHHHHHHHHHCCCTTT-------..CCH--------------..----...........-HHHHHHHHHHHHHHHHHHHHHHHHHHHHC------ CS
    Dynein_C    2 keteellstllslqpressssgsggssreekvlelaadileklpelfdlee.aekkpteyeeplntvllqElerfnkLleeirrsLkelqkaikGev 97  
                  +++ +l+++  +l+pr    +g gg + +ekv+++++di+e++pelf l e  e++p ++++p++ v+lqE+er+n+Ll e++rsL el++++kG +
  KOO20912.1 4251 AQSLALFKNCGELAPRGG--GGAGGMTLQEKVKRILDDIMERMPELFPLAElDERTPPDERTPYTSVFLQECERMNRLLFEVKRSLVELDLGLKGDL 4345
                  577789999999***954..5567888999***************99888744555***************************************** PP

                  ---HHHHHHHHHHHHTS--GGG.-----SS--HHHHHHHHHHHHHHHHHHH---.....B-GGGSS-HHHHHHHHHHHHHHHTT-----EE--EE-- CS
    Dynein_C   98 vmseeleelansllngkvPesWakksypslkplgsWvrdLleRvkqlqkwleeegkPkvfwLsgfffPqaFLtavlqnyarknkipideltfefevt 194 
                   m+e++e+l+nsl+++kvP+sWak +yps++ l+sW+ d+l+R +ql++w+ +  +Pkv w+ g+f+PqaFLtav+q  arkn++p+d++t  ++vt
  KOO20912.1 4346 GMTESMEALMNSLYDNKVPASWAKVAYPSMRGLASWLLDMLQRQRQLEAWTADLATPKVTWIAGLFNPQAFLTAVMQVLARKNELPLDRMTTVCDVT 4442
                  **********************999**************************55567***************************************** PP

                  -.............-EEE-SEEEESSEE..ETTCEE-SS...SEEEES-EEEE-E----TS.....EEEEEESSTT--SE.........EEEEEE.. CS
    Dynein_C  195 kkekeeeaeeepedGvyihGLfleGarwdkkegvLaesepkelfselPvihlkpveakkkekkkkkyecPvYktseRrgvlstthstnfvfsvdLpt 291 
                  kk++++e+e + +dG+y++G+fleGarwd  +g++++s  k l++++Pv+ +k+  a+k  +++  yecP Ykt +R+ v  ++    ++f++ L+t
  KOO20912.1 4443 KKMNPDEIEGATRDGAYVNGFFLEGARWDVATGMMDDSILKLLYCPMPVVLMKAALADKG-QRD-VYECPSYKTLTRNPVDGKP-TGGYIFTAGLKT 4536
                  ******************************************************988877.455.4***********9986555.679********* PP

                  ...-BHHHTTT-EEES CS
    Dynein_C  292 kkpeehwilrgvalll 307 
                  k++ ++wil+gval++
  KOO20912.1 4537 KQSVNKWILAGVALIM 4552
                  **************86 PP

>> MT  Microtubule-binding stalk of dynein motor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  264.9  13.0   9.9e-82   9.4e-79       2     342 ..    3108    3455 ..    3107    3457 .. 0.94

  Alignments for each domain:
  == domain 1  score: 264.9 bits;  conditional E-value: 9.9e-82
          MT    2 rlengllklqstaaqvddlkaklaaqevelkqknedadkliqvvgvetekvskekaiadeeekkvavinkevkkkqkdceedlakaepallaaqeal 98  
                  rle gl+kl+ +++qv +++  l  + v ++qk+ d+d l+  vg e+     + a+   e +kvavi++ev+  + +c+ dl  aepa+ aa eal
  KOO20912.1 3108 RLESGLVKLRGASTQVAEMQIVLKDESVIVEQKKADTDVLLVQVGQESTVADEQAALGAIEAEKVAVIQQEVSAFAAQCNADLLAAEPAIAAAAEAL 3204
                  9**********************************************999889999999************************************** PP

          MT   99 ntlnktnltelksfgsppdavvnvaaavmvllaprgkvpkdr.swkaakivmakvdafldslinfdkenihenclkaik......eylndpefepef 188 
                  n+l+k+ ltelks+ +p + v++v+ av  ++ap+g+v k + +w  ak +ma vd fl slinfdk+n+  + +  ++      +   +pef+   
  KOO20912.1 3205 NSLDKASLTELKSMSTPSPVVLQVCNAVQYMMAPKGQVKKVKtAWGEAKKMMASVDEFLKSLINFDKDNLLLENKAEVRakctgtPEAPNPEFNYTN 3301
                  ****************************************8747***********************997533332232111112567789999999 PP

          MT  189 ikskslaaaglcswvinivrfyevycdvepkrqalekanaelaaaqeklaaikakiaelnanlaeltaafekatadklkcqqeaeatartislanrl 285 
                  +k  s+aaaglc wv+ni+ ++++y dv+pkr  l++a ++l +a++klaa+ +++  lna  a l  ++ +at +k     +a ata+ +sla+rl
  KOO20912.1 3302 VKRISMAAAGLCDWVVNILIYHDIYLDVAPKRGLLQEAMNKLGEANKKLAAVNEHVDALNARKAALQNQLMQATEEKNALIAKAAATAKKLSLAERL 3398
                  ************************************************************************************************* PP

          MT  286 vgglasenvrwaeavenfksqektlcgdvllitafvsyvgfftkkyrqelldrlwlp 342 
                  v gl  e vrwa  ve + +++  l g++++ + f++y+g f  ++r +l +++w+p
  KOO20912.1 3399 VNGLKDEGVRWAANVELLGEEKAMLVGNMMVAAPFIAYIGPFNSEFRYKLWEQTWVP 3455
                  ********************************************************9 PP

>> AAA_9  ATP-binding dynein motor region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  232.4   0.0   3.5e-72   3.3e-69       3     220 .]    3483    3715 ..    3481    3715 .. 0.93

  Alignments for each domain:
  == domain 1  score: 232.4 bits;  conditional E-value: 3.5e-72
                  HH.HT--STHHHHHHHHHHH..SSEEEEESSSTTHHHHHHH.......HEESTTSTTHHHHHHHHHHTTSEEEESTT.SSHHSTTHHHHTTCCEE.. CS
       AAA_9    3 WnlqgLPsDelsieNaiivtkserwPlliDPqgqankwiknkekek.lkviklsdkkflktLenairfGkplliedvgeeldpiLepvLekeiikkg 98  
                  W ++gLPsD+ls+eNa+i+ +++r+Pl+iDPq q+++wi+ +e+ + l  +++s   +l  + +a++ G p+l+e++g+ +d+++e+vL++++i kg
  KOO20912.1 3483 WMSEGLPSDRLSLENAAIIVRCARYPLIIDPQLQGINWIRGRETPNgLVSCQQSFGGYLGMMAKAMEEGIPMLLEKCGQAFDAVMENVLARATIAKG 3579
                  999**************************************9666558888888889**************************************98 PP

                  .CEEEESSSE.EE--..SS...........CEEEEEESSTTSHHHHHHHHHSEEEE---SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
       AAA_9   99 .rkliklgdkeieys..en...........FrLylttklsnphyspeiaakvtlinFtvteeGLedqlLaevvkkerpeleekkeeliqeeaenkkq 181 
                   + ++klgdke+++   ++           FrLyl++kl+nphy pe++a++t+inFtvte+GLe+qlLa+vvk erp+lee++ +l+ ++++++++
  KOO20912.1 3580 rKLILKLGDKEVDMRcnPDpetgmplggplFRLYLQSKLPNPHYIPEVQAQCTIINFTVTERGLEEQLLAKVVKCERPDLEEQRAALVAQQNDFTIR 3676
                  68899********95333255566666666******************************************************************* PP

                  HHHHHHHHHHHHHHSSSSSSTHHHHHHHHHHHHHHHHHH CS
       AAA_9  182 lkeledklLeeLseaegniLedeelietLeksKktaeei 220 
                  lk led lLe+L++aeg+i e+e+lie+Le++K+t++ei
  KOO20912.1 3677 LKALEDGLLEMLANAEGDITENEALIESLEAAKETSQEI 3715
                  *************************************98 PP

>> AAA_7  P-loop containing dynein motor region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.2   0.0    0.0071       6.7      39      83 ..    1871    1912 ..    1850    1916 .. 0.91
   2 ?    1.4   0.0      0.21   1.9e+02      28      55 ..    2154    2181 ..    2148    2192 .. 0.82
   3 !  203.5   0.1     2e-63   1.8e-60       6     178 ..    2485    2655 ..    2481    2658 .. 0.98
   4 ?    0.7   0.1      0.34   3.2e+02     148     178 ..    3768    3797 ..    3747    3800 .. 0.81

  Alignments for each domain:
  == domain 1  score: 6.2 bits;  conditional E-value: 0.0071
       AAA_7   39 vGptGtGKtviikdllkkldkekylsltinfsaqtsanqlqdiie 83  
                   Gp+GtGKt ++kdl + l    + ++++n+s q++ +++ +i++
  KOO20912.1 1871 AGPAGTGKTETTKDLGRGLA---IWVIVMNCSDQMNYKTMANIFM 1912
                  69*****************9...999999***9999998887765 PP

  == domain 2  score: 1.4 bits;  conditional E-value: 0.21
       AAA_7   28 lllknkkpvllvGptGtGKtviikdllk 55  
                   ll  ++ v+  G +G+GKt++ k+l  
  KOO20912.1 2154 ELLGIRHCVFALGCAGSGKTCVWKTLQA 2181
                  5677889999************998655 PP

  == domain 3  score: 203.5 bits;  conditional E-value: 2e-63
       AAA_7    6 eakfseilVptvdtvrysyllelllknkkpvllvGptGtGKtviikdllkkldkekylsltinfsaqtsanqlqdiiesklekrrkgvygPpggkkl 102 
                   a+fs+i+Vpt dt+r+++l++ l ++ kpv+lvG +Gt+Kt+ii+d l +l+ e++++ +in+++ t a+ lq i+e++lek++++++ Ppg+kkl
  KOO20912.1 2485 GASFSSIVVPTLDTTRLTFLIDDLATRAKPVMLVGGAGTAKTTIIQDKLGRLP-EEIIYFNINLNSFTIASILQAILEQPLEKKTGTMFAPPGTKKL 2580
                  689**************************************************.******************************************* PP

       AAA_7  103 vvFvDDlnmpakekygaqppiellRqlldyggwYdrkklefkeikdvqlvaamgppgggrneitpRllrhfnvlai 178 
                  ++FvDD+nmp+++ky +q++i+ll q l+ygg+Yd+kkl++kei+ vq++++m+p++g+ + i+ R++rhf+++a 
  KOO20912.1 2581 IYFVDDMNMPTPDKYSTQSAIALLNQQLEYGGFYDLKKLTMKEIRGVQYLSSMNPTAGS-FFIQDRMQRHFATFAT 2655
                  ***********************************************************.*************986 PP

  == domain 4  score: 0.7 bits;  conditional E-value: 0.34
       AAA_7  148 dvqlvaamgppgggrneitpRllrhfnvlai 178 
                  + +++ a+ +++++ n+i+ R++  ++++++
  KOO20912.1 3768 NYMFLKAISKTKKS-NDIDDRFKNLMATISF 3797
                  68999****99999.***********99987 PP

>> AAA_lid_11  Dynein heavy chain AAA lid domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  147.3   0.0   3.6e-46   3.4e-43       1     164 []    4084    4244 ..    4084    4244 .. 0.92

  Alignments for each domain:
  == domain 1  score: 147.3 bits;  conditional E-value: 3.6e-46
                  HHHHHHHHCT-HHHHT............HHHHHHHHHHHHHHHHHGGGGTTTS-SS-----HHHHHHHHHHHHHHHHHCSSGGS-HHHHHHHHHHTT CS
  AAA_lid_11    1 kanllraysnesekideeffee..keeefkkllfsLcffHavvqeRrkFgplGwnipYeFnesdleisvevlkmyldeyeekevpwealkyligein 95  
                  + n+ ra+++    ++++++e   k++e+k ++f+L ffH++v eRr+Fg++Gw  pY F  +dl++++ v  ++l+++   +vpw +l+y++ge++
  KOO20912.1 4084 RPNMIRAFNT----FNDTVWEAcpKQSELKAIIFALGFFHSIVCERRQFGAIGWQRPYPFAPGDLSACIIVATNFLNDAP--KVPWADLQYIFGEVM 4174
                  5699****55....56667775689****************************************************999..*************** PP

                  TSTT--SHHHHHHHHHHHHHHSSGGGGSTT...-T...E.---SSHHHHHHHHCTS-SS--CCCCTS-TTH CS
  AAA_lid_11   96 YGGrvtDdwDrrllktyleeffseevleeeyk.sgeyki.peeksleeyleyieslpladspevfglhena 164 
                  YGG++tDd+Drrl+ +yl+ ++++ +l+  y+   ++++ p ++s+++++eyi++  +++ p ++glh+na
  KOO20912.1 4175 YGGHITDDLDRRLCASYLSVYMTDALLD-GYQlYPKFEVpPPTGSHKQFVEYIDENLINEGPMCYGLHPNA 4244
                  ***************************5.666534677777789**********9999************8 PP

>> Dynein_heavy  Dynein heavy chain region D6 P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  117.8   0.0   2.8e-37   2.7e-34       2     119 .]    3961    4083 ..    3960    4083 .. 0.93

  Alignments for each domain:
  == domain 1  score: 117.8 bits;  conditional E-value: 2.8e-37
                    TTS-EEEEE-TT--THHHHHHHHHHT.....T--EEEEETTSHHHHHHHHHHHHHHHHT-EEEEE-GGG-CCCHHHHHHH.......HHTT-EEE CS
  Dynein_heavy    2 pttPvlfilspgadptesleklakkl.....kklvksvslGqgqeeeaekalekaakegsWvlLqNchlapswlkeLekileeleeklhssfRlw 91  
                    p+tPv+f+lspg+dp  ++ +++        + l+ svslGqgqe++aekal++ + +g+Wv+LqN+ l+++wl++Lek le l e +++ fR++
    KOO20912.1 3961 PATPVFFLLSPGVDPLLAVRQIGGPAdkteaNGLFFSVSLGQGQEPVAEKALDRMQVSGGWVMLQNVELVARWLPKLEKKLEALIEGANPGFRVF 4055
                    89**************99999988443346666779**********************************************999999******* PP

                    EEEES-TTS-HHHHHTSEEEEE---SSH CS
  Dynein_heavy   92 ltsepspkfPislLqssikvtnepPkgl 119 
                    l+s p++ +P+++Lq+sik+tnepP+gl
    KOO20912.1 4056 LSSLPQNVIPVQILQNSIKLTNEPPSGL 4083
                    **************************97 PP

>> AAA_lid_1  AAA+ lid domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   92.7   0.1   1.4e-29   1.3e-26       2      98 ..    2691    2787 ..    2690    2789 .. 0.97

  Alignments for each domain:
  == domain 1  score: 92.7 bits;  conditional E-value: 1.4e-29
   AAA_lid_1    2 vaaalalhkkiaatflptaikfhyvfnlrdlsnifqgllfssaevlkapldlirlylheservygdkmveekdlellekvtlevakkffddvedevl 98  
                   +aal lhk +a +f+pta+ fhy +nlr++s +fqg+l  +++    p+ l rl+lhes rvy d++v+  d   +e +    ak ff+d ++++l
  KOO20912.1 2691 CSAALMLHKLVADAFMPTAVAFHYAWNLREMSRVFQGILKCTPDYYTEPMYLARLWLHESYRVYSDRLVDVADATRFEDMINRAAKSFFEDFDQDAL 2787
                  689******************************************************************************************9876 PP

>> Dynein_AAA_lid  Dynein heavy chain AAA lid domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.7   0.2   2.5e-22   2.3e-19       1     129 []    2350    2473 ..    2350    2473 .. 0.88

  Alignments for each domain:
  == domain 1  score: 69.7 bits;  conditional E-value: 2.5e-22
  Dynein_AAA_lid    1 leelfeklvepclefv.rkkckeivpvtdlnlvqslcrllealldefeekeeesadeeleeeeleevleklflfalvWSiGatldeds....r 88  
                      le l++++v+p+l+ + ++k+ +++p++++ +v +lc++le++l+    k       +  + + ++v+e++f fa +W++G+++  d+    r
      KOO20912.1 2350 LEALVQQYVPPTLDNMrKNKWMHLTPLMNFGMVSTLCSILEGVLTA---K-------NVPQGTDKDVYEAYFQFAAIWAFGGAFGADKandfR 2432
                      6889**********99345689************************...2.......356778899******************999977888 PP

  Dynein_AAA_lid   89 ekfdeflrellee.alklppeegtvyDyffdketgkWkpWee 129 
                      + f+e++r    + + k+p +eg+v+Dyf+d  ++k k+W++
      KOO20912.1 2433 KLFSEWWRMEWGKmNFKFP-DEGLVFDYFIDDVDKKGKHWRD 2473
                      8888888877554589998.********************85 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.1   0.0     0.011        10       6      85 ..    1872    1937 ..    1871    1992 .. 0.63
   2 !   17.0   0.0   4.8e-06    0.0045       5     137 ..    2165    2311 ..    2162    2312 .. 0.87
   3 !   10.9   0.0   0.00036      0.34       1     124 [.    2514    2637 ..    2514    2650 .. 0.71
   4 ?    4.7   0.0     0.029        27       2      36 ..    2861    2895 ..    2860    2906 .. 0.85

  Alignments for each domain:
  == domain 1  score: 6.1 bits;  conditional E-value: 0.011
                  --SSSSHHHHHHHGGGGBS--EEEEE--TT--HHHHH--B--.........--------G-SEEEEESGGG--HHHHHHH CS
       AAA_5    6 GppGtgKselaerlaaalnreveyvqltrdtteedlkgrreikngttslvdsplvraaregeilvlDEveraesevlnsL 85  
                  Gp GtgK+e ++ l + l   v +++++++++++++                      ++g+  ++DE++r++ evl+++
  KOO20912.1 1872 GPAGTGKTETTKDLGRGLAIWVIVMNCSDQMNYKTMANIFM--------------GLSQTGAWGCFDEFNRIPVEVLSVV 1937
                  99****************999999*****999988765444..............3446777777777777777776665 PP

  == domain 2  score: 17.0 bits;  conditional E-value: 4.8e-06
                  E--SSSSHHHHHHHGGGGB................S--EEEEE--TT--HHHHH--B--.........--------............G-SEEEEES CS
       AAA_5    5 vGppGtgKselaerlaaal................nreveyvqltrdtteedlkgrreikngttslvdsplvraar............egeilvlDE 73  
                  +G  G+gK+ +++ l aa                 + +++  ++++  t++dl g ++  + t++  d+++ + +r             ++++++++
  KOO20912.1 2165 LGCAGSGKTCVWKTLQAAQthlainpatrtpavgdGPTLVNALNPKAVTSDDLYGFVH--PVTKEPFDGIIAKIMRdfknasgaqlnvPKWVMLDGD 2259
                  68889999999999988877888888888888875555666678899***********..69*********************************** PP

                  GGG--HHHHHHHHHHHHSSEEE..-SSSEEE---......-EEEEEESS--.-TT-TTHHHHTT CS
       AAA_5   74 veraesevlnsLlslleerrllleeggelvkaknddllerfrviatanpldrslnelspalrsR 137 
                  ++    e+++s++++++++++l+  ++e++  ++      +r+i++  +l+    + spa++sR
  KOO20912.1 2260 ID---AEWIESMNTVMDDNKVLTLVSNERIPLSRS-----MRLIFEISNLK----NGSPATVSR 2311
                  **...*************************99997.....9****999888....557777776 PP

  == domain 3  score: 10.9 bits;  conditional E-value: 0.00036
                  EEEEE--SSSSHHHHHHHGGGGB..S--EEEEE--TT--HHHHH--B--.........--------G-SEEEEESGGG--HHHHHHHHHHHHSSEEE CS
       AAA_5    1 dvlLvGppGtgKselaerlaaal..nreveyvqltrdtteedlkgrreikngttslvdsplvraaregeilvlDEveraesevlnsLlslleerrll 95  
                  +v+LvG  Gt+K+++++  + +l  +  ++ ++l+++t ++ l+  +e  +  ++ +   +   ++++ i+++D+ ++  ++  ++  s +     +
  KOO20912.1 2514 PVMLVGGAGTAKTTIIQDKLGRLpeEIIYFNINLNSFTIASILQAILE--QPLEKKTGTMFAPPGTKKLIYFVDDMNMPTPDKYSTQ-SAIALLNQQ 2607
                  59*********************4444455566666666666666555..66677777777888889**********9999887776.555555555 PP

                  ..-SSSEEE---.........-EEEEEESS-- CS
       AAA_5   96 leeggelvkaknddller...frviatanpld 124 
                  le gg++  +k +   ++   ++ + ++np  
  KOO20912.1 2608 LEYGGFYDLKKLTM--KEirgVQYLSSMNPTA 2637
                  66777777777754..3333477777777765 PP

  == domain 4  score: 4.7 bits;  conditional E-value: 0.029
                  EEEE--SSSSHHHHHHHGGGGBS--EEEEE--TT- CS
       AAA_5    2 vlLvGppGtgKselaerlaaalnreveyvqltrdt 36  
                   lLvG  G+gK +l++  a   + +v+ + lt+ +
  KOO20912.1 2861 ALLVGVGGSGKQSLTRLAAFISGFTVFQIKLTSAY 2895
                  59*************99999889999999998765 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.2   0.0     0.025        24      12      56 ..    1872    1907 ..    1868    1917 .. 0.85
   2 ?    5.3   0.0     0.024        22       7      38 ..    2161    2199 ..    2159    2228 .. 0.63
   3 ?    4.3   0.0     0.047        45       5      70 ..    2512    2569 ..    2509    2609 .. 0.79
   4 ?   -3.2   0.0       9.9   9.3e+03       5      70 ..    2858    2914 ..    2856    2997 .. 0.58

  Alignments for each domain:
  == domain 1  score: 5.2 bits;  conditional E-value: 0.025
      AAA_22   12 GesGtGKTtllrrlleqldeeakaeeerpevvfvtlpsstsskdl 56  
                  G++GtGKT + + l + l            v+ ++++ +++ k++
  KOO20912.1 1872 GPAGTGKTETTKDLGRGL---------AIWVIVMNCSDQMNYKTM 1907
                  9****************9.........677889999988877765 PP

  == domain 2  score: 5.3 bits;  conditional E-value: 0.024
      AAA_22    7 ilvvtGesGtGKTtllrrlleqldeeakaee........e 38  
                  +++  G++G+GKT + ++l+   + + +++          
  KOO20912.1 2161 CVFALGCAGSGKTCVWKTLQAAQT-HLAINPatrtpavgD 2199
                  56678**************98753.322222544444444 PP

  == domain 3  score: 4.3 bits;  conditional E-value: 0.047
      AAA_22    5 agilvvtGesGtGKTtllrrlleqldeeakaeeerpevvfvtlpsst.sskdllrellralglelka 70  
                  a+ ++++G +Gt KTt ++  l +l         + e+++++++  + + +++l+++l++  +++ +
  KOO20912.1 2512 AKPVMLVGGAGTAKTTIIQDKLGRL---------PEEIIYFNINLNSfTIASILQAILEQPLEKKTG 2569
                  67789********************.........778887777777778*******99986655554 PP

  == domain 4  score: -3.2 bits;  conditional E-value: 9.9
      AAA_22    5 agilvvtGesGtGKTtllrrlleqldeeakaeeerpevvfvtlpsstsskdllrellralglelka 70  
                  +g  +++G  G+GK  l r  +            + +v+ ++l+s  +  d+  +++  + + + +
  KOO20912.1 2858 RGNALLVGVGGSGKQSLTRL-AAFIS--------GFTVFQIKLTSAYGMIDFKADIAALYASTGLK 2914
                  56778899999999555443.33332........66666777777776666666666666655555 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.9   0.0    0.0083       7.8       5      36 ..    1872    1903 ..    1870    1937 .. 0.83
   2 ?    2.3   0.0      0.23   2.2e+02       1      72 [.    2515    2592 ..    2515    2609 .. 0.59
   3 ?    2.5   0.1      0.19   1.8e+02       2      51 ..    2862    2909 ..    2861    2929 .. 0.80

  Alignments for each domain:
  == domain 1  score: 6.9 bits;  conditional E-value: 0.0083
                  SSTTSSHHHHHHHHHHHHTHEEEEEETTTCSS CS
         AAA    5 GppGtGKTllakavakelgvefleisgsells 36  
                  Gp GtGKT + k + + l + ++ +++s+ ++
  KOO20912.1 1872 GPAGTGKTETTKDLGRGLAIWVIVMNCSDQMN 1903
                  9***************************9983 PP

  == domain 2  score: 2.3 bits;  conditional E-value: 0.23
                  EEEESSTTSSHHHHHHHHHHHH..THEEEEEETTTCS.SS.....STTHHHHHHHHHHHHHHHTS.......TSEEEEEETGGGHHH CS
         AAA    1 vllyGppGtGKTllakavakel..gvefleisgsell.sk.....yvgesekkirelfkeakeka.......kpsilfiDEidalak 72  
                  v+l+G  Gt KT++++     l  ++ +++i++ +++  +     + +  ekk+                  k+ i f+D++   ++
  KOO20912.1 2515 VMLVGGAGTAKTTIIQDKLGRLpeEIIYFNINLNSFTiASilqaiLEQPLEKKTG---------TmfappgtKKLIYFVDDMNMPTP 2592
                  689*************999998443556777777777222222222222233333.........13333343347777777765555 PP

  == domain 3  score: 2.5 bits;  conditional E-value: 0.19
                  EEESSTTSSHHHHHHHHHHHHTHEEEEEETTTCSSSSTTHHHHHHHHHHH CS
         AAA    2 llyGppGtGKTllakavakelgvefleisgsellskyvgesekkirelfk 51  
                  ll+G  G GK +l +  a  +g+++++i++++     + + +++i++l +
  KOO20912.1 2862 LLVGVGGSGKQSLTRLAAFISGFTVFQIKLTSAY--GMIDFKADIAALYA 2909
                  89***************************99988..55666666666554 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.0       6.5   6.1e+03      14      48 ..    1792    1821 ..    1791    1851 .. 0.80
   2 ?    5.7   0.0     0.022        21       4      29 ..    1871    1896 ..    1871    1941 .. 0.74
   3 ?    2.8   0.0      0.17   1.6e+02       4      67 ..    2165    2243 ..    2162    2274 .. 0.63
   4 ?   -2.6   0.1       7.8   7.3e+03       2      18 ..    2862    2878 ..    2862    2891 .. 0.86

  Alignments for each domain:
  == domain 1  score: -2.3 bits;  conditional E-value: 6.5
      AAA_18   14 lakeLskrlgfgvnlrdvakenglllevdpealde 48  
                  + k++++r    +  +d a++++l + +d+e  ++
  KOO20912.1 1792 VLKYIAER---IETAGDFAWQSQLKFRWDEE--KS 1821
                  56788888...69999**************9..33 PP

  == domain 2  score: 5.7 bits;  conditional E-value: 0.022
      AAA_18    4 tGtpGvGKttlakeLskrlgf...gvnlr 29  
                  +G++G+GKt+ +k L + l++   +   +
  KOO20912.1 1871 AGPAGTGKTETTKDLGRGLAIwviV---M 1896
                  69*************9988774441...3 PP

  == domain 3  score: 2.8 bits;  conditional E-value: 0.17
      AAA_18    4 tGtpGvGKttlakeLskrl.gf.................gvnlrdvakenglllevdpealdeskrldedkldklldaleen 67  
                   G++G+GKt + k L+    ++                 +  l+  a  ++ l+++ ++    +k+  ++  +k+++ ++++
  KOO20912.1 2165 LGCAGSGKTCVWKTLQAAQtHLainpatrtpavgdgptlVNALNPKAVTSDDLYGFVHP---VTKEPFDGIIAKIMRDFKNA 2243
                  6**************87753335566666666666555555555555555555555555...55555555556666666555 PP

  == domain 4  score: -2.6 bits;  conditional E-value: 7.8
      AAA_18    2 lltGtpGvGKttlakeL 18  
                  ll G+ G+GK +l++  
  KOO20912.1 2862 LLVGVGGSGKQSLTRLA 2878
                  589**********9975 PP

>> AAA_19  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.1   0.9       1.1     1e+03      17      29 ..    1872    1884 ..    1869    1890 .. 0.84
   2 ?    0.6   0.1      0.67   6.3e+02      12      32 ..    2161    2181 ..    2157    2210 .. 0.82
   3 ?   10.2   0.0   0.00077      0.73       7      35 ..    2509    2537 ..    2505    2558 .. 0.84

  Alignments for each domain:
  == domain 1  score: -0.1 bits;  conditional E-value: 1.1
      AAA_19   17 aGpGtGKTrvlkh 29  
                  +++GtGKT+++k 
  KOO20912.1 1872 GPAGTGKTETTKD 1884
                  789******9975 PP

  == domain 2  score: 0.6 bits;  conditional E-value: 0.67
      AAA_19   12 vllvtaGpGtGKTrvlkhiva 32  
                  +++ ++ +G+GKT v k+  a
  KOO20912.1 2161 CVFALGCAGSGKTCVWKTLQA 2181
                  67889********99877655 PP

  == domain 3  score: 10.2 bits;  conditional E-value: 0.00077
      AAA_19    7 alkekvllvtaGpGtGKTrvlkhivallv 35  
                  a+++k++++++G+Gt KT++++ ++  l 
  KOO20912.1 2509 ATRAKPVMLVGGAGTAKTTIIQDKLGRLP 2537
                  56899****************99887665 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.3   0.0      0.82   7.7e+02      34      82 ..     277     331 ..     276     348 .. 0.81
   2 ?    0.5   1.8      0.45   4.2e+02      24      38 ..    1871    1885 ..    1866    1890 .. 0.85
   3 ?    4.4   0.1      0.03        28      20      44 ..    2161    2185 ..    2152    2214 .. 0.83
   4 ?    5.7   0.1     0.011        11      13      36 ..    2508    2530 ..    2503    2534 .. 0.80

  Alignments for each domain:
  == domain 1  score: -0.3 bits;  conditional E-value: 0.82
      AAA_30  34 alkalreaweaaggrviglAptgkaAkvLaeelgieastiakllkrlk.......g 82 
                 ++k++++a e+a+ +   lA  ++a ++L+ e+ i+a+  ++l++  +        
  KOO20912.1 277 LMKEVAAACEEANDNTKYLATLKTALQKLS-EIVIDAEAFQNLTHLFRpivhlimL 331
                 699***************************.78999*9999999887766555550 PP

  == domain 2  score: 0.5 bits;  conditional E-value: 0.45
      AAA_30   24 tGpAGtGKttalkal 38  
                   GpAGtGKt + k l
  KOO20912.1 1871 AGPAGTGKTETTKDL 1885
                  59*******998765 PP

  == domain 3  score: 4.4 bits;  conditional E-value: 0.03
      AAA_30   20 vavltGpAGtGKttalkalreawea 44  
                  ++++ G AG+GKt + k+l++a ++
  KOO20912.1 2161 CVFALGCAGSGKTCVWKTLQAAQTH 2185
                  77899*************9998776 PP

  == domain 4  score: 5.7 bits;  conditional E-value: 0.011
      AAA_30   13 lltsgdrvavltGpAGtGKttalk 36  
                  l+t   + ++l+G+AGt Ktt+++
  KOO20912.1 2508 LATRA-KPVMLVGGAGTAKTTIIQ 2530
                  55555.47899**********996 PP

>> Nup54  Nucleoporin complex subunit 54
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.7   0.1      0.13   1.2e+02      28      63 ..     530     565 ..     528     577 .. 0.90
   2 ?    4.1   2.5     0.049        46      44     108 ..    3342    3405 ..    3333    3422 .. 0.85

  Alignments for each domain:
  == domain 1  score: 2.7 bits;  conditional E-value: 0.13
                 EECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
       Nup54  28 vkGFedLakRvkaQqkevaqhrerlkeisdrleele 63 
                 + +Fe L +R   Q++  ++h   lk+ s++l++++
  KOO20912.1 530 IESFEGLLEREFIQADLERKHLDLLKAYSSDLRDVQ 565
                 789******************************998 PP

  == domain 2  score: 4.1 bits;  conditional E-value: 0.049
                  HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-SS---SS CS
       Nup54   44 evaqhrerlkeisdrleeleqkhqletsvrlekakkrhvelshRllrllrkleilrsrgyaldae 108 
                  ++ +++++l ++++++++l+ ++++ ++++l +a  ++ +l+ +    ++kl+++++   +l+ e
  KOO20912.1 3342 KLGEANKKLAAVNEHVDALN-ARKAALQNQLMQATEEKNALIAKAAATAKKLSLAERLVNGLKDE 3405
                  5667899*************.********************************999887777654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (4557 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       896  (0.0499749); expected 358.6 (0.02)
Passed bias filter:                      624  (0.0348039); expected 358.6 (0.02)
Passed Vit filter:                        79  (0.00440627); expected 17.9 (0.001)
Passed Fwd filter:                        31  (0.00172904); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              19  [number of targets reported over threshold]
# CPU time: 2.01u 0.39s 00:00:02.40 Elapsed: 00:00:00.58
# Mc/sec: 23685.48
//
Query:       KOO20913.1  [L=1457]
Description: hypothetical protein Ctob_001653 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
  ------ inclusion threshold ------
      0.022   14.6   0.1      0.043   13.7   0.1    1.4  1  HATPase_c_3  Histidine kinase-, DNA gyrase B-, and HSP90-like


Domain annotation for each model (and alignments):
>> HATPase_c_3  Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.1   2.4e-06     0.043      39      86 ..       2      58 ..       1      77 [. 0.83

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 2.4e-06
  HATPase_c_3 39 eDdGkGmseeelknalrlatsskeakr..ksts.........lGkkGiGlklAslslgk 86
                  D+GkG++ + l n+ + ++s+  ++r  +  +         lG++G+G k  s +l++
   KOO20913.1  2 LDNGKGLDAAALLNWAKDGKSHSAKTRavD--VrhrsffsgaLGEYGVGEKGGSARLAD 58
                 6*******************9999776341..2344456666*******9998888776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1457 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       499  (0.027832); expected 358.6 (0.02)
Passed bias filter:                      416  (0.0232026); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.89u 0.28s 00:00:01.17 Elapsed: 00:00:00.45
# Mc/sec: 9646.54
//
Query:       KOO20914.1  [L=238]
Description: hypothetical protein Ctob_001661 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    9.4e-14   51.5   0.0    3.8e-13   49.5   0.0    1.8  1  FmiP_Thoc5  Fms-interacting protein/Thoc5
  ------ inclusion threshold ------
       0.21   11.6   7.0        1.3    9.1   0.8    2.4  2  DHR10       Designed helical repeat protein 10 domain
        1.1    9.9   8.1         20    5.8   8.1    2.4  1  YtxH        YtxH-like protein
        1.4    6.4   8.0       0.94    6.9   1.3    2.0  2  DUF3584     Protein of unknown function (DUF3584)
        3.7    7.1   6.8        7.8    6.1   6.8    1.5  1  DUF4813     Domain of unknown function (DUF4813)
        5.2    5.8   6.0         12    4.6   0.6    2.1  2  Spc7        Spc7 kinetochore protein
        6.8    6.8  12.2          4    7.5   0.5    2.9  2  TPR_MLP1_2  TPR/MLP1/MLP2-like protein


Domain annotation for each model (and alignments):
>> FmiP_Thoc5  Fms-interacting protein/Thoc5
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.5   0.0   1.5e-16   3.8e-13      17     200 ..      61     229 ..      45     236 .. 0.82

  Alignments for each domain:
  == domain 1  score: 49.5 bits;  conditional E-value: 1.5e-16
  FmiP_Thoc5  17 rdktaeakqkvDskhlqlqNllyEkshlekEikkcldFkskdeeieLvpeeeFyeeapeeiskpedtkkeadehelmlaRLewEleqRkelaeqlkele 115
                  +++++ak ++ +   +l  l y +  l+++i++c +   +  +   v  e  ++   + i          + ++ +l RL  E ++R +l +  + l 
  KOO20914.1  61 EEAVERAKRRLTEADDELRALKYQRGRLQRAISECAEPPASTAD--AVATEAVLS---DVI----------SLEAATLYRLGVERDERVRLHALRDGLV 144
                 56677777777777777777777777777777777777766666..222222222...222..........446899********************** PP

  FmiP_Thoc5 116 ekkkkleqeieekkkfLssLppkLkslkkatkplqealglpltkerkqhelaslLPkPLYvlYvqleaykeavdkkleveIeGdv 200
                 ++k +l ++ e+  +   +   +++++ +a++ lq +l +   + + +h la lLP+PLY+l +++ ay +a++ + +++I+Gd+
  KOO20914.1 145 ARKASLASAEEKASELKAAVDAQMETVTAAAAALQAELLPMPRSAEPFHPLAPLLPSPLYTLAMTAAAYLRAFEADATLSIVGDL 229
                 ********99999999999*******************655569***************************************96 PP

>> DHR10  Designed helical repeat protein 10 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.1   0.8   0.00052       1.3      39      90 ..      44      95 ..       7      98 .. 0.84
   2 ?    5.8   0.7    0.0053        14       4      27 ..     143     166 ..     128     180 .. 0.78

  Alignments for each domain:
  == domain 1  score: 9.1 bits;  conditional E-value: 0.00052
       DHR10 39 iklleeieaelakleeakkklkelrdaleekeielrelerkeerlqrqlena 90
                ++l   ++  la++ + ++ +++++ +l+e   elr l+ ++ rlqr ++  
  KOO20914.1 44 MELRGVVAGTLAAHASGEEAVERAKRRLTEADDELRALKYQRGRLQRAISEC 95
                4555567778899999999****************************98865 PP

  == domain 2  score: 5.8 bits;  conditional E-value: 0.0053
       DHR10   4 laeekeelaelErkarelqakida 27 
                 l + k++la++E+ka el+a +da
  KOO20914.1 143 LVARKASLASAEEKASELKAAVDA 166
                 556788888888888888887776 PP

>> YtxH  YtxH-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.8   8.1    0.0078        20      11      71 ..      48     172 ..      46     176 .. 0.77

  Alignments for each domain:
  == domain 1  score: 5.8 bits;  conditional E-value: 0.0078
        YtxH  11 GaaaglLlAPksGketRkdlkekaddlkekakelleeakeka......................................................... 52 
                 G++ag L A  sG+e  +++k+++ ++ + +  l+++    +                                                         
  KOO20914.1  48 GVVAGTLAAHASGEEAVERAKRRLTEADDELRALKYQR---Grlqraisecaeppastadavateavlsdvisleaatlyrlgverdervrlhalrdgl 143
                 99*********************999999998875333...3445677777788777777777777777777777777777777777777777777777 PP

        YtxH  53 ..........kekaedlkekvkekadelk 71 
                           +eka++lk +v+ + + ++
  KOO20914.1 144 varkaslasaEEKASELKAAVDAQMETVT 172
                 77777777777777777777777777665 PP

>> DUF3584  Protein of unknown function (DUF3584)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.4   0.7    0.0041        11     840     923 ..      10      94 ..       4     104 .. 0.72
   2 ?    6.9   1.3   0.00037      0.94     605     653 ..     133     181 ..     126     190 .. 0.90

  Alignments for each domain:
  == domain 1  score: 3.4 bits;  conditional E-value: 0.0041
     DUF3584 840 rliedtklerkklekerkalekqldqldenlrklrdllskl..aelkldadaeqaegelaerlaaleelkrkrerlsedvkkaler 923
                 +l +++++ +++   ++ +++ q++ l e+   +  +l+ +  ++l+ +a  e+a   ++ rl   ++ +r+++++++ +++a+++
  KOO20914.1  10 KLRASAETLLAAKRAAKPSSKSQEVLLGESSA-VLMELRGVvaGTLAAHASGEEAVERAKRRLTEADDELRALKYQRGRLQRAISE 94 
                 55555666666666666666777777766666.66666766666788888888888888888888888888888888888888766 PP

  == domain 2  score: 6.9 bits;  conditional E-value: 0.00037
     DUF3584 605 rerlqaleealqsaeakqkqaeeelkqlnaeleeakravaeaatalkna 653
                 r rl+al + l + +a+ ++aee++++l+a+++++ + v+ aa+al+ +
  KOO20914.1 133 RVRLHALRDGLVARKASLASAEEKASELKAAVDAQMETVTAAAAALQAE 181
                 8899****************************************99976 PP

>> DUF4813  Domain of unknown function (DUF4813)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.1   6.8     0.003       7.8     167     218 ..     162     212 ..     148     225 .. 0.65

  Alignments for each domain:
  == domain 1  score: 6.1 bits;  conditional E-value: 0.003
     DUF4813 167 aapaapaaaaapaaaaaqvpaaapapvaaapqtplaplapvaalaaaaagaa 218
                 aa  a + ++++aaaa       p p +a+p  plapl p++  + a ++aa
  KOO20914.1 162 AAVDAQMETVTAAAAA-LQAELLPMPRSAEPFHPLAPLLPSPLYTLAMTAAA 212
                 3344444444444444.44456799*************99986654443333 PP

>> Spc7  Spc7 kinetochore protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.2   0.6    0.0066        17     196     232 ..      59      95 ..       3     109 .. 0.68
   2 ?    4.6   0.6    0.0048        12     197     242 ..     132     177 ..     104     183 .. 0.75

  Alignments for each domain:
  == domain 1  score: 4.2 bits;  conditional E-value: 0.0066
        Spc7 196 idkeeLeelreelaelkaeieekkkelaelqeqleel 232
                 + +e +e ++++l+e++ e++++k +  +lq+ + e 
  KOO20914.1  59 SGEEAVERAKRRLTEADDELRALKYQRGRLQRAISEC 95 
                 4456667777777777777777666666666655554 PP

  == domain 2  score: 4.6 bits;  conditional E-value: 0.0048
        Spc7 197 dkeeLeelreelaelkaeieekkkelaelqeqleeleekieelkeq 242
                 ++ +L++lr+ l++ ka +++ +++ +el++ ++++ e+++++++ 
  KOO20914.1 132 ERVRLHALRDGLVARKASLASAEEKASELKAAVDAQMETVTAAAAA 177
                 4667888888888888888888888888887777777777666544 PP

>> TPR_MLP1_2  TPR/MLP1/MLP2-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.4   5.2      0.12   3.2e+02      36      90 ..      41      95 ..       8     109 .. 0.67
   2 ?    7.5   0.5    0.0016         4      59     104 ..     136     181 ..     130     188 .. 0.58

  Alignments for each domain:
  == domain 1  score: 1.4 bits;  conditional E-value: 0.12
  TPR_MLP1_2 36 eiakeaqqkYerelvkhaedvkelqalreelnelkaeiaelkaeaesakaelees 90
                + + e     +  l  ha+  +++++++ +l e+ +e++ lk ++ +++ +++e+
  KOO20914.1 41 AVLMELRGVVAGTLAAHASGEEAVERAKRRLTEADDELRALKYQRGRLQRAISEC 95
                4555555555556778888888888888888888888888888888888777765 PP

  == domain 2  score: 7.5 bits;  conditional E-value: 0.0016
  TPR_MLP1_2  59 lqalreelnelkaeiaelkaeaesakaeleeseesweeqkeeleke 104
                 l alr+ l   ka +a+++++a ++ka+++++ e  +    +l+ e
  KOO20914.1 136 LHALRDGLVARKASLASAEEKASELKAAVDAQMETVTAAAAALQAE 181
                 4455555555555555555555555555555555555555555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (238 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       915  (0.0510346); expected 358.6 (0.02)
Passed bias filter:                      463  (0.0258241); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.49u 0.27s 00:00:00.76 Elapsed: 00:00:00.43
# Mc/sec: 1672.49
//
Query:       KOO20915.1  [L=166]
Description: cyclase dehydrase family [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.4e-12   46.8   0.0    4.2e-12   46.6   0.0    1.1  1  Polyketide_cyc2  Polyketide cyclase / dehydrase and lipid tra
    9.2e-09   35.6   0.0    1.3e-08   35.1   0.0    1.3  1  Polyketide_cyc   Polyketide cyclase / dehydrase and lipid tra
    4.7e-05   23.1   0.0    6.9e-05   22.6   0.0    1.2  1  COXG             Carbon monoxide dehydrogenase subunit G (Cox


Domain annotation for each model (and alignments):
>> Polyketide_cyc2  Polyketide cyclase / dehydrase and lipid transport
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.6   0.0     7e-16   4.2e-12       8     138 ..      25     166 .]      17     166 .] 0.75

  Alignments for each domain:
  == domain 1  score: 46.6 bits;  conditional E-value: 7e-16
                      EEESS-HHHHHHHHTTTTGGGGT-TTEEEEECSESTSSS......TTTEEEEECCCSSEEEEEEEEEETTTTEEEEEEE...SSS-TSEEEEEE CS
  Polyketide_cyc2   8 vviaappekVwalvsdfenwprWhpevarveleggggpa......rgvegtvrvggrgtvreelvevdpegrllsyriv..kpvpvanyvatwt 93 
                      + + appe++w++++ +e +p  +p++ +  ++  ++++       + +   r+++  ++ ++l++v++ + +++  +   + +++ +++++++
       KOO20915.1  25 ISVRAPPEAIWKIITAYERMPDVIPNIISNIVTR-DETGlrgvriDQEALLSRKMN-LRTSMTLEAVEE-PNRWTLALHriSGHGFLSFEGRYQ 115
                      6799*********************999773333.444333444433334445555.68********97.9******95699************ PP

                      EEECCETEE.EEEEEEEEE......E--TT--HHHHHHHHHHHHHHHHHHHH CS
  Polyketide_cyc2  94 vtpdgggtr.vtwtgefda......gplggpfekpaaakavkgdleagLerL 138
                      ++p+++gt+ +++ +e+ +      + + + ++k+ ++k++ +  +a+L++L
       KOO20915.1 116 LQPRADGTTyLSYVVELVPcpifplPLVERKIRKE-VPKMLSAVADAALAGL 166
                      *******7779999999964444444444666554.5777777777777765 PP

>> Polyketide_cyc  Polyketide cyclase / dehydrase and lipid transport
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.1   0.0   2.2e-12   1.3e-08       1     129 [.      27     158 ..      27     159 .. 0.72

  Alignments for each domain:
  == domain 1  score: 35.1 bits;  conditional E-value: 2.2e-12
                     ESS-HHHHHHHHTTTGGCCSCCCCEEEEEE.SSSEE......E..............EEECSTTSSCEEEEEEEEEEETTT......EEECTTCC CS
  Polyketide_cyc   1 vpapadqvyalvadvesypeflphcssvevleeaes...glsa..............dlevgfggltesftarvtldppee......itfklveg 72 
                     v ap++ ++++++ +e++p+ +p++  + ++ ++e+   g+++              +            t ++++    e          + + 
      KOO20915.1  27 VRAPPEAIWKIITAYERMPDVIPNII-SNIVTRDETglrGVRIdqeallsrkmnlrtS-----------MTLEAVE----EpnrwtlALHRISGH 105
                     679***********************.6777777764664444665444443333332...........2222222....233335322234445 PP

                     CCCEEEEEEEECTECCEEECEEEEEEEEEEEE-SSCHHHHHHHHHHHHHHHHHHHHH CS
  Polyketide_cyc  73 dfkslegkWtieslppnsggtrtkvalevdfkfaspllgalvgqvaervldellaal 129
                      f s+eg+ ++++ ++   gt t +++ v++ ++  ++ +lv+  ++++++++l a+
      KOO20915.1 106 GFLSFEGRYQLQPRAD---GT-TYLSYVVELVPCPIFPLPLVERKIRKEVPKMLSAV 158
                     8**************6...55.99999999999********************9886 PP

>> COXG  Carbon monoxide dehydrogenase subunit G (CoxG)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.6   0.0   1.2e-08   6.9e-05       1     130 [.      23     157 ..      23     161 .. 0.79

  Alignments for each domain:
  == domain 1  score: 22.6 bits;  conditional E-value: 1.2e-08
                 EEEEESS-HHHHHHHHT-HHHHGGGSTTEEE.EEEET.TEEEEEEEEESSSSEEEE..EEEEEEEEEETTTEEE..EEEEEE-SSEEEEEEEEEEEEEE CS
        COXG   1 GefrvaapkeavwefLndpeklarciPGvks.vekeg.deykvkvklkvGplkgsf..karvelselekensttieikGkGrgagvaidfalvvlveeg 95 
                 G ++v ap+ea+w++++ +e++   iP++ s + + + + ++ +   +   l+ ++  +++++l+ +e++n+ t+  +   +   ++ ++ ++++   +
  KOO20915.1  23 GGISVRAPPEAIWKIITAYERMPDVIPNIISnIVTRDeTGLRGVRIDQEALLSRKMnlRTSMTLEAVEEPNRWTLALHRISGHGFLSFEGRYQLQPRAD 121
                 56799***********************9773434443667766666677777777779***************7666444444578999999999999 PP

                 TTEEEEEEEE.EEEEEHHHHS-HHHHHHHHHHHHHH CS
        COXG  96 ggtrlswsak.vnvggllaslGsrlidsaarkline 130
                 g+t ls++++ v   ++   l++r+i++ + k++ +
  KOO20915.1 122 GTTYLSYVVElVPCPIFPLPLVERKIRKEVPKMLSA 157
                 99*****99845677888888888888888888766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (166 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       344  (0.0191868); expected 358.6 (0.02)
Passed bias filter:                      336  (0.0187406); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.39u 0.23s 00:00:00.62 Elapsed: 00:00:00.38
# Mc/sec: 1296.67
//
Query:       KOO20916.1  [L=258]
Description: hypothetical protein Ctob_001656 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
  ------ inclusion threshold ------
      0.029   13.7   0.1        0.3   10.5   0.0    2.3  2  DUF2917         Protein of unknown function (DUF2917)
       0.11   13.0   1.6       0.18   12.3   1.6    1.3  1  SNARE_assoc     SNARE associated Golgi protein
        6.9    6.8  37.0        8.5    6.5  18.8    2.2  2  Keratin_2_head  Keratin type II head


Domain annotation for each model (and alignments):
>> DUF2917  Protein of unknown function (DUF2917)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.4   0.0      0.07   4.2e+02      35      54 ..     126     145 ..     118     150 .. 0.87
   2 ?   10.5   0.0     5e-05       0.3      38      57 ..     175     194 ..     174     196 .. 0.90

  Alignments for each domain:
  == domain 1  score: 0.4 bits;  conditional E-value: 0.07
     DUF2917  35 eDhwLqaGqslrlargqrvv 54 
                 +D++ q Gq l+++r q +v
  KOO20916.1 126 YDMVEQLGQMLTISREQCIV 145
                 6888889*********9998 PP

  == domain 2  score: 10.5 bits;  conditional E-value: 5e-05
     DUF2917  38 wLqaGqslrlargqrvvlea 57 
                 wLq Gqs++la+g+++ l a
  KOO20916.1 175 WLQSGQSVQLAPGNKISLDA 194
                 **************998876 PP

>> SNARE_assoc  SNARE associated Golgi protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   1.6     3e-05      0.18      84     118 ..      14      48 ..       9      50 .. 0.92

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 3e-05
  SNARE_assoc  84 lvnyvaGltrvsfkrFflatfiGsipwalvyaylG 118
                  +v++vaGl  v+  +F+ a  ++ +p+a+++++ G
   KOO20916.1  14 AVSAVAGLVAVPAPKFTSAMTLAVAPRAFIFLQYG 48 
                  6899***************************9877 PP

>> Keratin_2_head  Keratin type II head
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.5  18.8    0.0014       8.5      61     140 ..      33     108 ..       5     111 .. 0.64
   2 ?    6.4  10.2    0.0016       9.4      81     126 ..     211     254 ..     179     258 .] 0.45

  Alignments for each domain:
  == domain 1  score: 6.5 bits;  conditional E-value: 0.0014
  Keratin_2_head  61 svagggsragsgfgfgggggggfglGfggGvglgfgagggvGggfGggggl.vGgggfGg.ggfGggGfGgpvcppgGIqeV 140
                      + + + ra   f  + gg+ g+g G+gg   +g+ +g+g   g+G  +g+ + ++g+G+  g+G+gG G   +p gG+  V
      KOO20916.1  33 MTLAVAPRAF-IFL-QYGGQNGYG-GYGGQ--QGY-GGSGSPQGYGPQQGYgMSAPGYGTqQGYGMGGQGWHLVPRGGVAGV 108
                     4445555444.232.334444444.33333..333.23333344444444334568999999********999999999766 PP

  == domain 2  score: 6.4 bits;  conditional E-value: 0.0016
  Keratin_2_head  81 ggfglGfggGvglgfgagggvGggfGgggglvGgggfGgggfGg.gG 126
                        g+  g G ++g+ +g    ggfG  g  +G+ g+G  g+G  gG
      KOO20916.1 211 APPGVDPGYGQQGGY-GGYPQQGGFGQQG--YGQQGYGQQGYGQqGG 254
                     333332233322333.2222224444444..4444444444444333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (258 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       403  (0.0224776); expected 358.6 (0.02)
Passed bias filter:                      275  (0.0153383); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.46u 0.22s 00:00:00.68 Elapsed: 00:00:00.41
# Mc/sec: 1904.89
//
Query:       KOO20917.1  [L=287]
Description: hypothetical protein Ctob_001657 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (287 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       296  (0.0165096); expected 358.6 (0.02)
Passed bias filter:                      271  (0.0151152); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.43u 0.25s 00:00:00.68 Elapsed: 00:00:00.41
# Mc/sec: 2094.07
//
Query:       KOO20918.1  [L=263]
Description: family methyltransferase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      4e-10   40.0   0.0    5.3e-10   39.6   0.0    1.2  1  Methyltransf_21  Methyltransferase FkbM domain
  ------ inclusion threshold ------
       0.11   12.3   0.0       0.15   11.9   0.0    1.3  1  Methyltransf_23  Methyltransferase domain


Domain annotation for each model (and alignments):
>> Methyltransf_21  Methyltransferase FkbM domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.6   0.0   5.9e-14   5.3e-10       1     166 [.      46     208 ..      46     238 .. 0.68

  Alignments for each domain:
  == domain 1  score: 39.6 bits;  conditional E-value: 5.9e-14
  Methyltransf_21   1 dvGanigvwdsfanltarlcggggevlaiEPvpnslpkfeklranll.........tlavgndvglyelivegksg.gkyfpfavgdtngfsts 84 
                      d+Gan+g+w + +      + ++++++ iE++ +    +++ r+  l         ++ ++++       ++ +++ +k+    +gd ++f++ 
       KOO20918.1  46 DIGANRGDWTRSVL----TMFPHAQFVMIEANIE---HAQNGRYRDLlrrgnvtalSAILHDS------SHNVTWNmMKKGKPGTGD-SIFQER 125
                      9******9999994....4778899999***999...55555555444333222222222211......222333333344444444.444444 PP

  Methyltransf_21  85 .svlggedaryievpvvtldsfleei.kksridllkiDvEGaElevLeGaqkglkrcqpnlivvEvhkfk.efet.elfdeirqfl 166
                       ++++  ++++   ++v ld++l+ +   + +dl+k+D++GaE  +L+G+   l+r    ++++E  + + + ++ + f+e + f+
       KOO20918.1 126 tRHYF-ANGVQLVRQTVKLDELLRQHrLSNAFDLVKLDIQGAEVAALRGGLGVLSRA--EVVQLELPFVGeYNVGaPRFSEGISFM 208
                      36664.99**************99999**********************99999994..444456655553333354455544444 PP

>> Methyltransf_23  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   1.7e-05      0.15      20      59 ..      38      76 ..      24     161 .. 0.76

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 1.7e-05
  Methyltransf_23 20 lraggrvLdiGcGtGillevlrengf..svtgvDlspeavei 59
                      ++++rvLdiG++ G ++++  + +   ++++++++    e 
       KOO20918.1 38 GFRPQRVLDIGANRGDWTRSVLTMFPhaQFVMIEANI---EH 76
                     5899*************99986654437888888863...33 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (263 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       405  (0.0225891); expected 358.6 (0.02)
Passed bias filter:                      394  (0.0219756); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.42u 0.23s 00:00:00.65 Elapsed: 00:00:00.38
# Mc/sec: 2066.36
//
Query:       KOO20919.1  [L=378]
Description: pyruvate dehydrogenase kinase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
      5e-21   75.2   0.1    7.2e-21   74.7   0.1    1.2  1  BCDHK_Adom3  Mitochondrial branched-chain alpha-ketoacid dehy
    1.6e-09   38.2   0.0    3.1e-09   37.3   0.0    1.4  1  HATPase_c    Histidine kinase-, DNA gyrase B-, and HSP90-like
     0.0027   17.5   0.0      0.005   16.7   0.0    1.4  1  HATPase_c_3  Histidine kinase-, DNA gyrase B-, and HSP90-like


Domain annotation for each model (and alignments):
>> BCDHK_Adom3  Mitochondrial branched-chain alpha-ketoacid dehydrogenase kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   74.7   0.1   1.2e-24   7.2e-21      34     161 ..       1     136 [.       1     137 [. 0.89

  Alignments for each domain:
  == domain 1  score: 74.7 bits;  conditional E-value: 1.2e-24
  BCDHK_Adom3  34 lAhrvkelenlPdglvenpsvkkvkdwYaqsfeellelpkp.eleenekftelLekikkrHddvvttlaqGvlelk............ekrkrk.... 114
                  +A+r+ el++lP+gl++ p++ kv  wY + +++++++p+  +++++++ft++++  +++ + v ++l+  v ++             +         
   KOO20919.1   1 MAQRIVELQTLPFGLNHSPHILKVIGWYSSFVDTITSMPRVsSVDDEDRFTSTIDAQLQTPSLVTAMLSAAVSQSAasindpstdsrrQ----Patrt 94 
                  59**************************************977********************************98888887765432....14444 PP

  BCDHK_Adom3 115 qidseiqsFLdrfymsRIgiRmLieqhiaLteqskskkepsdyvGiI 161
                  q  + +q+ Ldrf+++RIg+R+L+e+h+ +++ +     ++++ GiI
   KOO20919.1  95 QRVDFMQKALDRFFTARIGLRFLMEHHVRISRVQ-----EENWSGII 136
                  88889*************************9975.....45899998 PP

>> HATPase_c  Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.3   0.0   5.1e-13   3.1e-09       4     109 ..     191     322 ..     188     324 .. 0.84

  Alignments for each domain:
  == domain 1  score: 37.3 bits;  conditional E-value: 5.1e-13
                 HHHHHHHHHHHHHHHHH.......HSTTT.....EEEEEEEEEETEEEEEEEESSSSSTTHHHTGTCS.TTCH................HCSTCHTSTS CS
   HATPase_c   4 krLrqiisnlvdNavkf.......atkag.....eieveikaseddlvisveDnGiGipkedlkklfe.kfsq................ddstkrgggg 73 
                 ++++ i+ +l++Na+++       a   +      i v+i   +d+l ++++D G Gi  ++ +++   ++++                +  +++   g
  KOO20919.1 191 SHMHYICTELLKNAMRAtttrhrrA---PghnlpPIVVTIAFGKDTLGVRISDEGGGIALAETNRVWRyAYTTapvplieldgsadappQTLRRSALAG 286
                 68899************55544431...04444477999998779*******************9998888889999999988888876556666679* PP

                 SSHHHHHHHHHHHHTTTEEEEEEETTTEEEEEEEEE CS
   HATPase_c  74 tGlGlsivkklvelmgGeiwvesepgrGttftftlp 109
                  G+Gl +++ +++ +gG++ ++s +g+Gt+  ++lp
  KOO20919.1 287 YGMGLPLSRLYSQYLGGRLDLRSLEGHGTDCFLHLP 322
                 ******************************999998 PP

>> HATPase_c_3  Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.0   8.3e-07     0.005       7      62 ..     197     262 ..     191     310 .. 0.76

  Alignments for each domain:
  == domain 1  score: 16.7 bits;  conditional E-value: 8.3e-07
  HATPase_c_3   7 laelvdNsldAdaen.............vkievnknrgktgeivieDdGkGmseeelknalrlatsske 62 
                   +el++N++ A  ++             v+i + k+   t  ++i D+G G+  +e  ++ r+a ++  
   KOO20919.1 197 CTELLKNAMRATTTRhrrapghnlppivVTIAFGKD---TLGVRISDEGGGIALAETNRVWRYAYTTAP 262
                  68************9***********8888888876...58****************998888877655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (378 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       396  (0.0220871); expected 358.6 (0.02)
Passed bias filter:                      341  (0.0190195); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.44u 0.21s 00:00:00.65 Elapsed: 00:00:00.36
# Mc/sec: 3148.44
//
Query:       KOO20920.1  [L=1371]
Description: tetratricopeptide repeat protein 21b [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.3e-36  123.6 114.5    1.1e-05   25.8   3.8   20.0 22  TPR_19           Tetratricopeptide repeat
    5.4e-24   82.8 116.3    0.00059   20.4   1.2   25.2 28  TPR_14           Tetratricopeptide repeat
    3.2e-22   77.4  55.4    0.00065   19.4   0.1   16.2 17  TPR_1            Tetratricopeptide repeat
    3.1e-21   73.7  85.9    0.00076   19.4   0.0   21.3 20  TPR_2            Tetratricopeptide repeat
    4.4e-21   75.3  89.9    0.00058   20.5   2.1   16.3 17  TPR_16           Tetratricopeptide repeat
    8.4e-15   54.8  58.4    8.4e-06   25.9   1.8   12.6 13  ANAPC3           Anaphase-promoting complex, cyclosome, subun
    5.2e-10   38.7  43.7       0.21   11.9   0.3   15.3 15  TPR_8            Tetratricopeptide repeat
    3.8e-06   26.9  28.1      0.066   13.6   0.1   10.2  9  TPR_17           Tetratricopeptide repeat
    2.3e-05   24.7  70.2      0.062   14.0   0.1   18.1 17  TPR_6            Tetratricopeptide repeat
    2.4e-05   24.1  52.6       0.55   10.4   0.0   15.7 15  TPR_7            Tetratricopeptide repeat
    2.8e-05   24.2  46.0      0.036   14.2   0.7    9.6  9  TPR_9            Tetratricopeptide repeat
    0.00041   20.0  30.2        1.3    8.8   0.1   10.9 13  TPR_11           TPR repeat
    0.00067   19.0   2.0    0.00067   19.0   2.0    8.1  8  TPR_15           Tetratricopeptide repeat
     0.0013   18.5   6.3     0.0013   18.5   6.3    9.0  9  TPR_21           Tetratricopeptide repeat-like domain
     0.0045   17.3  96.6       0.19   12.1   2.0   16.7 17  TPR_12           Tetratricopeptide repeat
  ------ inclusion threshold ------
      0.022   14.0  11.2       0.71    9.0   1.6    4.2  5  FAT              FAT domain
      0.028   14.8   0.8      0.028   14.8   0.8   12.2 14  TPR_20           Tetratricopeptide repeat
      0.051   13.7   0.4      0.051   13.7   0.4    5.4  3  Fis1_TPR_C       Fis1 C-terminal tetratricopeptide repeat
       0.14   12.9   0.0       0.14   12.9   0.0   12.7 10  TPR_4            Tetratricopeptide repeat
       0.19   10.7  12.6       0.19   10.7   0.1    4.4  5  ChAPs            ChAPs (Chs5p-Arf1p-binding proteins)
       0.67   10.4  17.3        1.5    9.2   0.2    5.8  5  Alkyl_sulf_dimr  Alkyl sulfatase dimerisation
       0.93    9.2  12.1       0.62    9.7   0.1    5.0  5  YfiO             Outer membrane lipoprotein
        2.4    7.4   8.6        1.4    8.2   6.2    1.8  2  DUF3379          Protein of unknown function (DUF3379)


Domain annotation for each model (and alignments):
>> TPR_19  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.5   0.1      0.56   4.3e+02       2      24 ..      45      69 ..      20      82 .. 0.62
   2 ?    1.8   0.0      0.45   3.5e+02      26      57 ..     110     141 ..     108     147 .. 0.88
   3 ?    6.3   0.1     0.017        13       6      41 ..     178     215 ..     176     218 .. 0.83
   4 !   18.1   0.2   3.7e-06    0.0029       3      57 ..     211     265 ..     209     271 .. 0.95
   5 ?   -1.3   0.2       4.2   3.3e+03       4      29 ..     290     315 ..     288     323 .. 0.62
   6 ?    5.5   0.3     0.032        25       5      45 ..     368     408 ..     364     421 .. 0.90
   7 !   18.9   1.5   2.1e-06    0.0016       5      68 .]     503     566 ..     499     566 .. 0.93
   8 !   20.4   3.0   7.1e-07   0.00055       6      56 ..     538     588 ..     534     603 .. 0.86
   9 !    8.8   1.3     0.003       2.4       5      57 ..     571     626 ..     567     634 .. 0.79
  10 ?    4.7   0.1     0.056        44      28      51 ..     670     693 ..     668     702 .. 0.86
  11 !   15.3   1.4   2.7e-05     0.021       5      45 ..     718     758 ..     715     763 .. 0.91
  12 !    8.7   0.2     0.003       2.4      26      62 ..     773     809 ..     755     813 .. 0.80
  13 !   25.8   3.8   1.4e-08   1.1e-05       6      52 ..     821     867 ..     816     869 .. 0.94
  14 ?    1.7   5.2      0.49   3.8e+02      31      66 ..     900     934 ..     895     935 .. 0.82
  15 !   25.4   4.7     2e-08   1.5e-05       6      57 ..     965    1016 ..     958    1031 .. 0.89
  16 ?    4.3   0.4     0.077        60      25      56 ..    1022    1053 ..    1013    1061 .. 0.83
  17 !   10.5   0.7   0.00087      0.68       6      57 ..    1037    1088 ..    1032    1092 .. 0.88
  18 ?   -1.3   0.1       4.2   3.3e+03       2      27 ..    1104    1128 ..    1103    1138 .. 0.73
  19 ?   -2.3   0.0       8.7   6.8e+03       9      24 ..    1159    1174 ..    1156    1187 .. 0.59
  20 !   12.5   0.7    0.0002      0.16       4      54 ..    1191    1241 ..    1189    1249 .. 0.93
  21 ?    6.2   0.0     0.019        15      24      50 ..    1251    1277 ..    1243    1293 .. 0.80
  22 !   15.4   0.1   2.6e-05      0.02       6      62 ..    1301    1358 ..    1298    1360 .. 0.90

  Alignments for each domain:
  == domain 1  score: 1.5 bits;  conditional E-value: 0.56
      TPR_19  2 laegdyaeAlalleqal.qedpk.n 24
                ++eg   eA++ le++l  +dp+ +
  KOO20920.1 45 IKEGAAGEAVRELEAMLrRADPQmQ 69
                4566666666666666523355533 PP

  == domain 2  score: 1.8 bits;  conditional E-value: 0.45
      TPR_19  26 earllLAeallalgqldeAealLdalpeedpd 57 
                 +ar+  A++l+  g++ +A++ ++ ++++++ 
  KOO20920.1 110 RARMTAAQLLWHFGETFDAKQHVQHILRMQKS 141
                 689999******************99998876 PP

  == domain 3  score: 6.3 bits;  conditional E-value: 0.017
      TPR_19   6 dyaeAlalleqalqe..dpknaearllLAeallalgql 41 
                  +++A +++eqa+q+   +k+++a ++ A++   +g+ 
  KOO20920.1 178 EFEAAESFFEQAIQAggGAKDLDAMMGIAKLASMQGNH 215
                 689***********955555999999999999999985 PP

  == domain 4  score: 18.1 bits;  conditional E-value: 3.7e-06
      TPR_19   3 aegdyaeAlalleqalqedpknaearllLAeallalgqldeAealLdalpeedpd 57 
                 ++g++  Al+ l++++  ++  + a++  A +ll+lg++++A ++ ++++++  +
  KOO20920.1 211 MQGNHRGALDKLSEVIGLYAWFLPALAEKALVLLNLGDWEQAVETAQRVLAQSDN 265
                 69***********************************************999876 PP

  == domain 5  score: -1.3 bits;  conditional E-value: 4.2
      TPR_19   4 egdyaeAlalleqalqedpknaearl 29 
                 e d  +A+++l+++ q+   ++ + +
  KOO20920.1 290 ETDARAAASRLTELSQALDRHEPLNA 315
                 55888999999998776444333333 PP

  == domain 6  score: 5.5 bits;  conditional E-value: 0.032
      TPR_19   5 gdyaeAlalleqalqedpknaearllLAeallalgqldeAe 45 
                 +d++ A++ l++a + + + +e+   L++ ++ +g++ +Ae
  KOO20920.1 368 EDHQGAMQVLKRASSLEEGADEVMPFLIKSQILAGEILDAE 408
                 79********************9999999999999999987 PP

  == domain 7  score: 18.9 bits;  conditional E-value: 2.1e-06
      TPR_19   5 gdyaeAlalleqalqedpknaearllLAeallalgqldeAealLdalpeedpddaryasLlAkl 68 
                 + +  A + l ++ +++p+ ++ +++LA+a++   ++++A ++++ + ++dp  a++a L A++
  KOO20920.1 503 QLLGKATRVLHEVAKHSPGLLDSQMQLARAHYLRADYEAALRCCSSIAKADPTFADAALLHAQI 566
                 55678889999999************************************************97 PP

  == domain 8  score: 20.4 bits;  conditional E-value: 7.1e-07
      TPR_19   6 dyaeAlalleqalqedpknaearllLAeallalgqldeAealLdalpeedp 56 
                 dy++Al+  +++ ++dp  a+a+ll A++ll+l  + +A a+Ld ++ ++ 
  KOO20920.1 538 DYEAALRCCSSIAKADPTFADAALLHAQILLKLDKTRQAGAVLDSALSHNF 588
                 9*******************************************9988765 PP

  == domain 9  score: 8.8 bits;  conditional E-value: 0.003
      TPR_19   5 gdyaeAlalleqalqe...dpknaearllLAeallalgqldeAealLdalpeedpd 57 
                  +  +A a l +al++     +++  +l  A++l  +g+++eAe +L+++ +++  
  KOO20920.1 571 DKTRQAGAVLDSALSHnfaVREQPLFQLIKAQILHLQGEFAEAETMLSRAIAAQGG 626
                 566788888888888844445588888888*******************9888765 PP

  == domain 10  score: 4.7 bits;  conditional E-value: 0.056
      TPR_19  28 rllLAeallalgqldeAealLdal 51 
                  ++L++alla+  + eA+ +++a+
  KOO20920.1 670 HMQLVDALLAQQKVSEAQSAMAAA 693
                 6889**************999986 PP

  == domain 11  score: 15.3 bits;  conditional E-value: 2.7e-05
      TPR_19   5 gdyaeAlalleqalqedpknaearllLAeallalgqldeAe 45 
                 gd ++Al+ll+++ +e++++ +ar +LA+++l+  + + A 
  KOO20920.1 718 GDIESALQLLRAIPSESAHYHAARKALADLYLEHRNDKRAY 758
                 9*******************************998888775 PP

  == domain 12  score: 8.7 bits;  conditional E-value: 0.003
      TPR_19  26 earllLAeallalgqldeAealLdalpeedpddarya 62 
                 +  + L ea++a  ++++A+a+ ++++++ p+d+ +a
  KOO20920.1 773 ASYMMLGEAYMAVLEPEKAIAAFETALRKSPNDPVLA 809
                 4455789*************************99877 PP

  == domain 13  score: 25.8 bits;  conditional E-value: 1.4e-08
      TPR_19   6 dyaeAlalleqalqedpknaearllLAeallalgqldeAealLdalp 52 
                  ya A+++++ a ++dp    +r+ LA ++l+l+++d+A+  L++l 
  KOO20920.1 821 AYAKAIEYYSDAAAADPSKTPLRYELAALYLNLKRYDAAMTELKQLI 867
                 69******************************************986 PP

  == domain 14  score: 1.7 bits;  conditional E-value: 0.49
      TPR_19  31 L.AeallalgqldeAealLdalpeedpddaryasLlA 66 
                 L A+++ al+ l eA ++L +++  +++  ++a+L+A
  KOO20920.1 900 LqAKVHKALNALPEALEALHQAQSNQQN--ALAQLRA 934
                 44999***********************..5555665 PP

  == domain 15  score: 25.4 bits;  conditional E-value: 2e-08
      TPR_19    6 dyaeAlalleqalqedpknaearllLAeallalgqldeAealLdalpeedpd 57  
                  d ++Al++++ al+++ +++ + l+LA+++la g++d+A++ ++ l+  ++ 
  KOO20920.1  965 DTDAALDAYKTALKHNEDDEKVMLALARLHLARGEVDAAQQQCSSLMTLNAA 1016
                  89***************************************99988876655 PP

  == domain 16  score: 4.3 bits;  conditional E-value: 0.077
      TPR_19   25 aearllLAeallalgqldeAealLdalpeedp 56  
                  ++ar+l A+++++  ++d+A+   ++l++++p
  KOO20920.1 1022 DAARILIADIMIQKSEWDAAIYHFEQLLLKQP 1053
                  4677788*************988888888877 PP

  == domain 17  score: 10.5 bits;  conditional E-value: 0.00087
      TPR_19    6 dyaeAlalleqalqedpknaearllLAeallalgqldeAealLdalpeedpd 57  
                    ++A+ ++eq+l + p    a + +  +l  +g+ +eA+++L+ + ++ p 
  KOO20920.1 1037 EWDAAIYHFEQLLLKQPALFGAIAKMLSLLRRAGRMAEAIQVLKNAERSSPR 1088
                  679***************8888888******************998888776 PP

  == domain 18  score: -1.3 bits;  conditional E-value: 4.2
      TPR_19    2 laegdyaeAlalleqalqedpknaea 27  
                   +++++ +Al++l  a   d +++e 
  KOO20920.1 1104 RYQNQPRAALRHLNMA-RRDGEYGEP 1128
                  57999*******9998.555555554 PP

  == domain 19  score: -2.3 bits;  conditional E-value: 8.7
      TPR_19    9 eAlalleqalqedpkn 24  
                  eA+++ e++l e p +
  KOO20920.1 1159 EAVKAAERLLREMPSS 1174
                  5555555555555543 PP

  == domain 20  score: 12.5 bits;  conditional E-value: 0.0002
      TPR_19    4 egdyaeAlalleqalqedpknaearllLAeallalgqldeAealLdalpee 54  
                  +++ ++A+a+l ++l  + +++ a+  L +a+l l+q  +A++ L+++ + 
  KOO20920.1 1191 RNQIDRAVAMLLELLGVEKDYLPALVCLSQAYLMLKQAPKARNHLKRVAKI 1241
                  6899******************************************99875 PP

  == domain 21  score: 6.2 bits;  conditional E-value: 0.019
      TPR_19   24 naearllLAeallalgqldeAealLda 50  
                   ++ +l LA++++  g +d Ae+l+ +
  KOO20920.1 1251 FERGWLMLADVYIVGGKYDLAEELCWR 1277
                  6677999***************99755 PP

  == domain 22  score: 15.4 bits;  conditional E-value: 2.6e-05
      TPR_19    6 dyaeAlalleqalqedpk.naearllLAeallalgqldeAealLdalpeedpddarya 62  
                   y +A++++e+a+  +++ +a++ + L   +l+++ + eA++++ +++ ++pd +r++
  KOO20920.1 1301 AYKDAASHYEKAWGFENEaSAAVGYKLSFNYLKAKKYVEAIDVCHKVLGQYPDYPRIK 1358
                  699*********9775555999999****************************99986 PP

>> TPR_14  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.3   0.0         1   8.1e+02       5      37 ..       4      36 ..       2      43 .. 0.86
   2 ?    0.9   0.3       1.4   1.1e+03      14      33 ..      47      67 ..      38      77 .. 0.77
   3 ?    3.0   0.2       0.3   2.3e+02       2      38 ..     110     146 ..     109     157 .. 0.81
   4 ?    0.2   0.0       2.4   1.8e+03      15      35 ..     177     197 ..     176     208 .. 0.72
   5 ?   -0.6   0.0       4.4   3.4e+03       7      33 ..     205     231 ..     199     239 .. 0.73
   6 !   11.1   0.3   0.00075      0.58       3      31 ..     235     263 ..     233     269 .. 0.89
   7 ?    6.6   0.1      0.02        16       8      39 ..     361     392 ..     354     397 .. 0.83
   8 ?   -0.7   0.1       4.8   3.8e+03      12      29 ..     435     452 ..     429     459 .. 0.77
   9 !   12.3   1.7    0.0003      0.24       4      44 .]     526     566 ..     523     567 .. 0.93
  10 ?    0.9   0.2       1.4   1.1e+03       3      30 ..     559     586 ..     557     587 .. 0.87
  11 !   10.6   0.4    0.0011      0.83       5      32 ..     598     625 ..     594     633 .. 0.85
  12 ?    1.8   0.3      0.76   5.9e+02       3      38 ..     669     705 ..     668     711 .. 0.75
  13 ?    6.3   0.4     0.026        21       4      44 .]     705     747 ..     702     747 .. 0.82
  14 ?    2.4   0.4      0.47   3.7e+02       2      26 ..     739     763 ..     738     771 .. 0.82
  15 !   17.5   0.0   6.6e-06    0.0052       2      37 ..     773     808 ..     772     813 .. 0.92
  16 ?    5.4   0.1      0.05        39       6      33 ..     811     838 ..     808     841 .. 0.89
  17 !   12.5   0.8   0.00027      0.21       3      37 ..     842     876 ..     840     878 .. 0.91
  18 ?    2.7   2.1      0.37   2.9e+02       3      39 ..     897     932 ..     895     934 .. 0.83
  19 !   20.4   1.2   7.5e-07   0.00059       5      44 .]     954     993 ..     950     993 .. 0.95
  20 ?    5.9   0.7     0.036        28       5      27 ..     988    1010 ..     985    1030 .. 0.75
  21 ?    1.7   0.1       0.8   6.2e+02       3      33 ..    1024    1054 ..    1021    1063 .. 0.85
  22 !    9.1   0.3    0.0034       2.7       3      33 ..    1058    1088 ..    1056    1092 .. 0.86
  23 ?    2.9   0.1      0.33   2.5e+02       4      33 ..    1096    1125 ..    1093    1136 .. 0.74
  24 ?    1.0   0.1       1.4   1.1e+03      16      35 ..    1156    1175 ..    1153    1188 .. 0.78
  25 ?    2.7   0.1      0.38   2.9e+02      13      43 ..    1190    1220 ..    1178    1221 .. 0.86
  26 ?    2.6   0.0       0.4   3.1e+02       3      29 ..    1214    1240 ..    1212    1243 .. 0.90
  27 !   13.8   0.0   9.9e-05     0.077       3      42 ..    1254    1293 ..    1252    1295 .. 0.95
  28 ?    4.1   0.0      0.13     1e+02      11      38 ..    1331    1358 ..    1322    1362 .. 0.87

  Alignments for each domain:
  == domain 1  score: 1.3 bits;  conditional E-value: 1
      TPR_14  5 lalaeallalGdpdeAiallrralalaPddaea 37
                l l+ ++++lG ++   +++ ++l++  +d+ +
  KOO20920.1  4 LSLVNYYARLGYYRHVQTVCAEVLKKRANDPLV 36
                56899********************99999865 PP

  == domain 2  score: 0.9 bits;  conditional E-value: 1.4
      TPR_14 14 lGdpdeAiallrralal.aPd 33
                 G   eA++ l+++l++ +P+
  KOO20920.1 47 EGAAGEAVRELEAMLRRaDPQ 67
                577889999999999962565 PP

  == domain 3  score: 3.0 bits;  conditional E-value: 0.3
      TPR_14   2 eallalaeallalGdpdeAiallrralalaPddaeaw 38 
                 +a++ +a++l++ G++ +A ++ + +l+ + ++  a+
  KOO20920.1 110 RARMTAAQLLWHFGETFDAKQHVQHILRMQKSNVPAL 146
                 68999****************9999999887775544 PP

  == domain 4  score: 0.2 bits;  conditional E-value: 2.4
      TPR_14  15 GdpdeAiallrralalaPdda 35 
                 +++++A+  +++a++++ +  
  KOO20920.1 177 EEFEAAESFFEQAIQAGGGAK 197
                 6899***********976443 PP

  == domain 5  score: -0.6 bits;  conditional E-value: 4.4
      TPR_14   7 laeallalGdpdeAiallrralalaPd 33 
                 +a++   +G++++A++ l +++ l+ +
  KOO20920.1 205 IAKLASMQGNHRGALDKLSEVIGLYAW 231
                 56667779*******999998876655 PP

  == domain 6  score: 11.1 bits;  conditional E-value: 0.00075
      TPR_14   3 allalaeallalGdpdeAiallrralala 31 
                 al++ a +ll+lGd+++A++ ++r+la+ 
  KOO20920.1 235 ALAEKALVLLNLGDWEQAVETAQRVLAQS 263
                 6788899*******************986 PP

  == domain 7  score: 6.6 bits;  conditional E-value: 0.02
      TPR_14   8 aeallalGdpdeAiallrralalaPddaeawl 39 
                 a  l+ l+d+++A+++l+ra +l  + +e+  
  KOO20920.1 361 AYQLMLLEDHQGAMQVLKRASSLEEGADEVMP 392
                 5678899**************99988877765 PP

  == domain 8  score: -0.7 bits;  conditional E-value: 4.8
      TPR_14  12 lalGdpdeAiallrrala 29 
                 ++  d d+A+ +l+ra  
  KOO20920.1 435 RRYKDVDTAVGHLDRAST 452
                 45678999******9954 PP

  == domain 9  score: 12.3 bits;  conditional E-value: 0.0003
      TPR_14   4 llalaeallalGdpdeAiallrralalaPddaeawlllaql 44 
                 +++la+a++ + d+++A++++  + +++P++a+a ll aq+
  KOO20920.1 526 QMQLARAHYLRADYEAALRCCSSIAKADPTFADAALLHAQI 566
                 789*******************************9999885 PP

  == domain 10  score: 0.9 bits;  conditional E-value: 1.4
      TPR_14   3 allalaeallalGdpdeAiallrralal 30 
                 a l+ a++ll l+++++A a+l+ al++
  KOO20920.1 559 AALLHAQILLKLDKTRQAGAVLDSALSH 586
                 66667999*****************997 PP

  == domain 11  score: 10.6 bits;  conditional E-value: 0.0011
      TPR_14   5 lalaeallalGdpdeAiallrralalaP 32 
                 l  a++l  +G+++eA+++l ra+a++ 
  KOO20920.1 598 LIKAQILHLQGEFAEAETMLSRAIAAQG 625
                 556899999***************9865 PP

  == domain 12  score: 1.8 bits;  conditional E-value: 0.76
      TPR_14   3 allalaeallalGdpdeAiallrralala.Pddaeaw 38 
                 ++++l++alla+++  eA  +  +a+  +  ++ e +
  KOO20920.1 669 LHMQLVDALLAQQKVSEAQSAMAAAVVEFdGTPVEGR 705
                 5789**************9988888665414444555 PP

  == domain 13  score: 6.3 bits;  conditional E-value: 0.026
      TPR_14   4 llalaealla..lGdpdeAiallrralalaPddaeawlllaql 44 
                 +l++a a  +   Gd + A++llr++ +      +a+ +la+l
  KOO20920.1 705 RLQIANAKVQvvKGDIESALQLLRAIPSESAHYHAARKALADL 747
                 5666666555336***************************986 PP

  == domain 14  score: 2.4 bits;  conditional E-value: 0.47
      TPR_14   2 eallalaeallalGdpdeAiallrr 26 
                 +a++ala+++l+ ++ ++A a++++
  KOO20920.1 739 AARKALADLYLEHRNDKRAYAACHE 763
                 6899***************998876 PP

  == domain 15  score: 17.5 bits;  conditional E-value: 6.6e-06
      TPR_14   2 eallalaeallalGdpdeAiallrralalaPddaea 37 
                 + +++l+ea++a  +p++Aia+++ al++ P+d+++
  KOO20920.1 773 ASYMMLGEAYMAVLEPEKAIAAFETALRKSPNDPVL 808
                 5689*****************************986 PP

  == domain 16  score: 5.4 bits;  conditional E-value: 0.05
      TPR_14   6 alaeallalGdpdeAiallrralalaPd 33 
                 +++++l     +++Ai+++ +a a++P+
  KOO20920.1 811 RIGHVLVSTHAYAKAIEYYSDAAAADPS 838
                 57899999999*************9995 PP

  == domain 17  score: 12.5 bits;  conditional E-value: 0.00027
      TPR_14   3 allalaeallalGdpdeAiallrralalaPddaea 37 
                 ++++la+++l+l ++d+A++ l++++a++  +a a
  KOO20920.1 842 LRYELAALYLNLKRYDAAMTELKQLIAACGYSAGA 876
                 689************************99887765 PP

  == domain 18  score: 2.7 bits;  conditional E-value: 0.37
      TPR_14   3 allalaeallalGdpdeAiallrralalaPddaeawl 39 
                 al++ a+++ al  + eA+++l++a + + ++a a+l
  KOO20920.1 897 ALQLQAKVHKALNALPEALEALHQAQS-NQQNALAQL 932
                 78899********************55.666676665 PP

  == domain 19  score: 20.4 bits;  conditional E-value: 7.5e-07
      TPR_14   5 lalaeallalGdpdeAiallrralalaPddaeawlllaql 44 
                 ++l++++++l d+d+A+++++ al+++ dd+ + l+la+l
  KOO20920.1 954 MELGALHEQLHDTDAALDAYKTALKHNEDDEKVMLALARL 993
                 789***********************************97 PP

  == domain 20  score: 5.9 bits;  conditional E-value: 0.036
      TPR_14    5 lalaeallalGdpdeAiallrra 27  
                  lala+++la+G+ d+A + +  +
  KOO20920.1  988 LALARLHLARGEVDAAQQQCSSL 1010
                  89**************9998776 PP

  == domain 21  score: 1.7 bits;  conditional E-value: 0.8
      TPR_14    3 allalaeallalGdpdeAiallrralalaPd 33  
                  a+ ++a+++ +  ++d+Ai +++++l ++P+
  KOO20920.1 1024 ARILIADIMIQKSEWDAAIYHFEQLLLKQPA 1054
                  6778899999***************999986 PP

  == domain 22  score: 9.1 bits;  conditional E-value: 0.0034
      TPR_14    3 allalaeallalGdpdeAiallrralalaPd 33  
                  a ++++++l+++G+ +eAi++l+ a +  P 
  KOO20920.1 1058 AIAKMLSLLRRAGRMAEAIQVLKNAERSSPR 1088
                  6688999******************887776 PP

  == domain 23  score: 2.9 bits;  conditional E-value: 0.33
      TPR_14    4 llalaeallalGdpdeAiallrralalaPd 33  
                  +++ + + + + +p++A+++l+ a +++  
  KOO20920.1 1096 RYCQGLLARYQNQPRAALRHLNMARRDGEY 1125
                  678888888899************776653 PP

  == domain 24  score: 1.0 bits;  conditional E-value: 1.4
      TPR_14   16 dpdeAiallrralalaPdda 35  
                  +p eA+++++r+l+  P++a
  KOO20920.1 1156 EPNEAVKAAERLLREMPSSA 1175
                  67899999999999888775 PP

  == domain 25  score: 2.7 bits;  conditional E-value: 0.38
      TPR_14   13 alGdpdeAiallrralalaPddaeawlllaq 43  
                  ++ + d+A+a+l ++l    d + a+  l q
  KOO20920.1 1190 ERNQIDRAVAMLLELLGVEKDYLPALVCLSQ 1220
                  6789*************99999999999887 PP

  == domain 26  score: 2.6 bits;  conditional E-value: 0.4
      TPR_14    3 allalaeallalGdpdeAiallrrala 29  
                  al +l +a+l l +  +A+++l+r+ +
  KOO20920.1 1214 ALVCLSQAYLMLKQAPKARNHLKRVAK 1240
                  7889*******************9865 PP

  == domain 27  score: 13.8 bits;  conditional E-value: 9.9e-05
      TPR_14    3 allalaeallalGdpdeAiallrralalaPddaeawllla 42  
                   +l+la+++   G++d A++l+ r+la + + a aw +l+
  KOO20920.1 1254 GWLMLADVYIVGGKYDLAEELCWRCLASNKSCAKAWEFLG 1293
                  6***********************************9998 PP

  == domain 28  score: 4.1 bits;  conditional E-value: 0.13
      TPR_14   11 llalGdpdeAiallrralalaPddaeaw 38  
                  +l + ++ eAi++++++l ++Pd +++ 
  KOO20920.1 1331 YLKAKKYVEAIDVCHKVLGQYPDYPRIK 1358
                  67788999***************99875 PP

>> TPR_1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.0   0.2      0.26     2e+02      15      29 ..     177     191 ..     176     192 .. 0.91
   2 ?   -2.1   0.0       5.1   3.9e+03       3      23 ..     201     221 ..     200     228 .. 0.78
   3 !    9.4   0.0    0.0012      0.93       3      29 ..     235     261 ..     234     265 .. 0.90
   4 !    7.2   0.1    0.0062       4.8       5      34 .]     527     556 ..     524     556 .. 0.87
   5 !    6.9   0.1    0.0077         6       7      29 ..     600     622 ..     598     624 .. 0.93
   6 !   18.2   0.0   2.1e-06    0.0016       3      34 .]     774     805 ..     772     805 .. 0.94
   7 !    8.5   0.0    0.0023       1.8       6      33 ..     811     838 ..     809     839 .. 0.90
   8 !    7.6   0.2    0.0045       3.5       5      21 ..     844     860 ..     841     864 .. 0.92
   9 ?    2.4   0.3      0.19   1.5e+02       3      28 ..     897     922 ..     895     927 .. 0.84
  10 !   19.4   0.1   8.3e-07   0.00065       6      34 .]     955     983 ..     950     983 .. 0.93
  11 ?   -1.0   0.0       2.4   1.9e+03      14      26 ..    1035    1047 ..    1033    1053 .. 0.81
  12 ?   -2.5   0.0       7.2   5.6e+03      11      27 ..    1066    1082 ..    1065    1082 .. 0.79
  13 ?    2.1   0.1      0.25     2e+02       5      27 ..    1097    1119 ..    1095    1121 .. 0.91
  14 ?   -1.7   0.1         4   3.1e+03       9      30 ..    1220    1241 ..    1220    1242 .. 0.88
  15 !    8.5   0.0    0.0023       1.8       3      31 ..    1254    1282 ..    1252    1285 .. 0.89
  16 ?    3.3   1.2      0.11        82       1      27 [.    1286    1312 ..    1286    1312 .. 0.95
  17 !    9.4   0.2    0.0012      0.93      11      34 .]    1331    1354 ..    1331    1354 .. 0.95

  Alignments for each domain:
  == domain 1  score: 2.0 bits;  conditional E-value: 0.26
                 T-HHHHHHHHHHHHH CS
       TPR_1  15 gkydeAleyyekALe 29 
                 ++++ A+ ++e+A++
  KOO20920.1 177 EEFEAAESFFEQAIQ 191
                 589**********97 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 5.1
                 HHHHHHHHHHHTT-HHHHHHH CS
       TPR_1   3 alynlGnayfklgkydeAley 23 
                 a  +++ +   +g++  Al+ 
  KOO20920.1 201 AMMGIAKLASMQGNHRGALDK 221
                 56778999999*****99985 PP

  == domain 3  score: 9.4 bits;  conditional E-value: 0.0012
                 HHHHHHHHHHHTT-HHHHHHHHHHHHH CS
       TPR_1   3 alynlGnayfklgkydeAleyyekALe 29 
                 al  +++++++lg++++A+e  +++L 
  KOO20920.1 235 ALAEKALVLLNLGDWEQAVETAQRVLA 261
                 77889***************9999996 PP

  == domain 4  score: 7.2 bits;  conditional E-value: 0.0062
                 HHHHHHHHHTT-HHHHHHHHHHHHHHSTTH CS
       TPR_1   5 ynlGnayfklgkydeAleyyekALelnPnn 34 
                  +l+ a++   +y+ Al +++   + +P++
  KOO20920.1 527 MQLARAHYLRADYEAALRCCSSIAKADPTF 556
                 67999***************9888888875 PP

  == domain 5  score: 6.9 bits;  conditional E-value: 0.0077
                 HHHHHHHTT-HHHHHHHHHHHHH CS
       TPR_1   7 lGnayfklgkydeAleyyekALe 29 
                 ++++++ +g++ eA+   ++A+ 
  KOO20920.1 600 KAQILHLQGEFAEAETMLSRAIA 622
                 689******************95 PP

  == domain 6  score: 18.2 bits;  conditional E-value: 2.1e-06
                 HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH CS
       TPR_1   3 alynlGnayfklgkydeAleyyekALelnPnn 34 
                 ++  lG ay+   ++++A++++e AL+  Pn+
  KOO20920.1 774 SYMMLGEAYMAVLEPEKAIAAFETALRKSPND 805
                 7999**************************96 PP

  == domain 7  score: 8.5 bits;  conditional E-value: 0.0023
                 HHHHHHHHTT-HHHHHHHHHHHHHHSTT CS
       TPR_1   6 nlGnayfklgkydeAleyyekALelnPn 33 
                 ++G+++ +   y +A+eyy+ A   +P+
  KOO20920.1 811 RIGHVLVSTHAYAKAIEYYSDAAAADPS 838
                 7899999999**********99988886 PP

  == domain 8  score: 7.6 bits;  conditional E-value: 0.0045
                 HHHHHHHHHTT-HHHHH CS
       TPR_1   5 ynlGnayfklgkydeAl 21 
                 y l+++y++l++yd A 
  KOO20920.1 844 YELAALYLNLKRYDAAM 860
                 89*************96 PP

  == domain 9  score: 2.4 bits;  conditional E-value: 0.19
                 HHHHHHHHHHHTT-HHHHHHHHHHHH CS
       TPR_1   3 alynlGnayfklgkydeAleyyekAL 28 
                 al   + ++  l+ + eAle+  +A 
  KOO20920.1 897 ALQLQAKVHKALNALPEALEALHQAQ 922
                 6667789999*************996 PP

  == domain 10  score: 19.4 bits;  conditional E-value: 8.3e-07
                 HHHHHHHHTT-HHHHHHHHHHHHHHSTTH CS
       TPR_1   6 nlGnayfklgkydeAleyyekALelnPnn 34 
                  lG+++ +l + d Al++y+ AL++n+++
  KOO20920.1 955 ELGALHEQLHDTDAALDAYKTALKHNEDD 983
                 69************************986 PP

  == domain 11  score: -1.0 bits;  conditional E-value: 2.4
                  TT-HHHHHHHHHH CS
       TPR_1   14 lgkydeAleyyek 26  
                  + ++d A+ ++e+
  KOO20920.1 1035 KSEWDAAIYHFEQ 1047
                  5689*******98 PP

  == domain 12  score: -2.5 bits;  conditional E-value: 7.2
                  HHHTT-HHHHHHHHHHH CS
       TPR_1   11 yfklgkydeAleyyekA 27  
                  +++ g+  eA++  + A
  KOO20920.1 1066 LRRAGRMAEAIQVLKNA 1082
                  567899*****977765 PP

  == domain 13  score: 2.1 bits;  conditional E-value: 0.25
                  HHHHHHHHHTT-HHHHHHHHHHH CS
       TPR_1    5 ynlGnayfklgkydeAleyyekA 27  
                  y  G++ ++++++  Al + + A
  KOO20920.1 1097 YCQGLLARYQNQPRAALRHLNMA 1119
                  7789***************9988 PP

  == domain 14  score: -1.7 bits;  conditional E-value: 4
                  HHHHHTT-HHHHHHHHHHHHHH CS
       TPR_1    9 nayfklgkydeAleyyekALel 30  
                  +ay+ l++  +A  + +++ ++
  KOO20920.1 1220 QAYLMLKQAPKARNHLKRVAKI 1241
                  58*************9998776 PP

  == domain 15  score: 8.5 bits;  conditional E-value: 0.0023
                  HHHHHHHHHHHTT-HHHHHHHHHHHHHHS CS
       TPR_1    3 alynlGnayfklgkydeAleyyekALeln 31  
                   +  l+ +y   gkyd A+e + ++L  n
  KOO20920.1 1254 GWLMLADVYIVGGKYDLAEELCWRCLASN 1282
                  69999********************9866 PP

  == domain 16  score: 3.3 bits;  conditional E-value: 0.11
                  HHHHHHHHHHHHHTT-HHHHHHHHHHH CS
       TPR_1    1 akalynlGnayfklgkydeAleyyekA 27  
                  aka+  lG++  k   y++A  +yekA
  KOO20920.1 1286 AKAWEFLGVVKEKEAAYKDAASHYEKA 1312
                  799999********************9 PP

  == domain 17  score: 9.4 bits;  conditional E-value: 0.0012
                  HHHTT-HHHHHHHHHHHHHHSTTH CS
       TPR_1   11 yfklgkydeAleyyekALelnPnn 34  
                  y+k +ky eA++ + k+L  +P++
  KOO20920.1 1331 YLKAKKYVEAIDVCHKVLGQYPDY 1354
                  99****************999997 PP

>> TPR_2  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.0   0.3      0.75   5.8e+02      16      29 ..     178     191 ..     176     192 .. 0.89
   2 ?    0.3   0.0       1.3     1e+03       3      28 ..     201     226 ..     200     229 .. 0.84
   3 !   10.7   0.0   0.00061      0.47       3      30 ..     235     262 ..     234     265 .. 0.89
   4 ?    0.3   0.7       1.3     1e+03       6      31 ..     359     384 ..     354     387 .. 0.82
   5 !    8.4   0.1    0.0032       2.5       5      33 ..     527     555 ..     524     556 .. 0.90
   6 ?    5.4   0.1     0.029        23       8      29 ..     601     622 ..     596     626 .. 0.90
   7 !   19.4   0.0   9.7e-07   0.00076       3      34 .]     774     805 ..     772     805 .. 0.95
   8 !    8.2   0.0    0.0039         3       6      33 ..     811     838 ..     807     839 .. 0.89
   9 !    8.7   0.8    0.0026         2       5      29 ..     844     868 ..     841     871 .. 0.91
  10 ?    3.8   0.4       0.1        78       2      28 ..     896     922 ..     895     928 .. 0.89
  11 !   15.6   0.2   1.6e-05     0.013       5      34 .]     954     983 ..     950     983 .. 0.91
  12 ?    0.0   0.0       1.6   1.2e+03       4      23 ..     987    1006 ..     985    1014 .. 0.83
  13 ?    6.2   0.1     0.016        13       6      32 ..    1027    1053 ..    1023    1055 .. 0.88
  14 ?    1.0   0.0      0.79   6.1e+02      11      32 ..    1066    1087 ..    1064    1089 .. 0.84
  15 ?    3.4   0.1      0.13     1e+02       5      27 ..    1097    1119 ..    1093    1121 .. 0.89
  16 ?    0.7   0.0      0.95   7.4e+02      17      33 ..    1157    1173 ..    1156    1174 .. 0.88
  17 !    8.7   0.0    0.0026         2       3      31 ..    1214    1242 ..    1213    1244 .. 0.92
  18 ?    4.3   0.1     0.067        52       3      24 ..    1254    1275 ..    1252    1284 .. 0.87
  19 ?    4.0   1.6     0.086        67       1      27 [.    1286    1312 ..    1286    1312 .. 0.96
  20 !    8.8   0.1    0.0024       1.9       5      33 ..    1325    1353 ..    1325    1354 .. 0.92

  Alignments for each domain:
  == domain 1  score: 1.0 bits;  conditional E-value: 0.75
       TPR_2  16 dyeeAleafekAle 29 
                 ++e A+ +fe+A++
  KOO20920.1 178 EFEAAESFFEQAIQ 191
                 79**********97 PP

  == domain 2  score: 0.3 bits;  conditional E-value: 1.3
       TPR_2   3 alynlGlayyklgdyeeAleafekAl 28 
                 a + +++++  +g++  Al+ + +++
  KOO20920.1 201 AMMGIAKLASMQGNHRGALDKLSEVI 226
                 5677899999*********9998876 PP

  == domain 3  score: 10.7 bits;  conditional E-value: 0.00061
       TPR_2   3 alynlGlayyklgdyeeAleafekAlel 30 
                 al + +l++++lgd+e+A+e  +++l+ 
  KOO20920.1 235 ALAEKALVLLNLGDWEQAVETAQRVLAQ 262
                 677899******************9986 PP

  == domain 4  score: 0.3 bits;  conditional E-value: 1.3
       TPR_2   6 nlGlayyklgdyeeAleafekAleld 31 
                 + ++ ++ l d++ A + +++A +l+
  KOO20920.1 359 ENAYQLMLLEDHQGAMQVLKRASSLE 384
                 5688999**************98876 PP

  == domain 5  score: 8.4 bits;  conditional E-value: 0.0032
       TPR_2   5 ynlGlayyklgdyeeAleafekAleldPn 33 
                 ++l++a+y + dye Al+++    + dP+
  KOO20920.1 527 MQLARAHYLRADYEAALRCCSSIAKADPT 555
                 689*****************999999997 PP

  == domain 6  score: 5.4 bits;  conditional E-value: 0.029
       TPR_2   8 GlayyklgdyeeAleafekAle 29 
                 ++++  +g+++eA+  + +A++
  KOO20920.1 601 AQILHLQGEFAEAETMLSRAIA 622
                 899****************997 PP

  == domain 7  score: 19.4 bits;  conditional E-value: 9.7e-07
       TPR_2   3 alynlGlayyklgdyeeAleafekAleldPnn 34 
                  +++lG+ay++  ++e+A++afe Al+  Pn+
  KOO20920.1 774 SYMMLGEAYMAVLEPEKAIAAFETALRKSPND 805
                 6899**************************97 PP

  == domain 8  score: 8.2 bits;  conditional E-value: 0.0039
       TPR_2   6 nlGlayyklgdyeeAleafekAleldPn 33 
                 ++G ++     y++A+e++  A + dP 
  KOO20920.1 811 RIGHVLVSTHAYAKAIEYYSDAAAADPS 838
                 78889999999*************9995 PP

  == domain 9  score: 8.7 bits;  conditional E-value: 0.0026
       TPR_2   5 ynlGlayyklgdyeeAleafekAle 29 
                 y+l+ +y++l++y+ A   +++ ++
  KOO20920.1 844 YELAALYLNLKRYDAAMTELKQLIA 868
                 89*****************999986 PP

  == domain 10  score: 3.8 bits;  conditional E-value: 0.1
       TPR_2   2 ealynlGlayyklgdyeeAleafekAl 28 
                 +al  +++++ +l+ + eAlea+ +A 
  KOO20920.1 896 KALQLQAKVHKALNALPEALEALHQAQ 922
                 588899*******************96 PP

  == domain 11  score: 15.6 bits;  conditional E-value: 1.6e-05
       TPR_2   5 ynlGlayyklgdyeeAleafekAleldPnn 34 
                 ++lG ++++l d + Al+a++ Al++++++
  KOO20920.1 954 MELGALHEQLHDTDAALDAYKTALKHNEDD 983
                 689************************986 PP

  == domain 12  score: 0.0 bits;  conditional E-value: 1.6
       TPR_2    4 lynlGlayyklgdyeeAlea 23  
                    +l+++++++g+ + A + 
  KOO20920.1  987 MLALARLHLARGEVDAAQQQ 1006
                  5689***********99875 PP

  == domain 13  score: 6.2 bits;  conditional E-value: 0.016
       TPR_2    6 nlGlayyklgdyeeAleafekAleldP 32  
                   ++++ +++ +++ A+ +fe+ l   P
  KOO20920.1 1027 LIADIMIQKSEWDAAIYHFEQLLLKQP 1053
                  6789999999*************9888 PP

  == domain 14  score: 1.0 bits;  conditional E-value: 0.79
       TPR_2   11 yyklgdyeeAleafekAleldP 32  
                  ++++g+ +eA++ ++ A +  P
  KOO20920.1 1066 LRRAGRMAEAIQVLKNAERSSP 1087
                  7899*********999977666 PP

  == domain 15  score: 3.4 bits;  conditional E-value: 0.13
       TPR_2    5 ynlGlayyklgdyeeAleafekA 27  
                  y++Gl++++++++  Al++++ A
  KOO20920.1 1097 YCQGLLARYQNQPRAALRHLNMA 1119
                  899****************9865 PP

  == domain 16  score: 0.7 bits;  conditional E-value: 0.95
       TPR_2   17 yeeAleafekAleldPn 33  
                  ++eA++a e+ l+  P 
  KOO20920.1 1157 PNEAVKAAERLLREMPS 1173
                  58***********9995 PP

  == domain 17  score: 8.7 bits;  conditional E-value: 0.0026
       TPR_2    3 alynlGlayyklgdyeeAleafekAleld 31  
                  al +l +ay+ l++  +A+++++++ +++
  KOO20920.1 1214 ALVCLSQAYLMLKQAPKARNHLKRVAKIA 1242
                  7889********************99985 PP

  == domain 18  score: 4.3 bits;  conditional E-value: 0.067
       TPR_2    3 alynlGlayyklgdyeeAleaf 24  
                  ++ +l+++y+  g+y+ A+e++
  KOO20920.1 1254 GWLMLADVYIVGGKYDLAEELC 1275
                  799***************9976 PP

  == domain 19  score: 4.0 bits;  conditional E-value: 0.086
       TPR_2    1 aealynlGlayyklgdyeeAleafekA 27  
                  a+a+  lG + +k   y++A+ ++ekA
  KOO20920.1 1286 AKAWEFLGVVKEKEAAYKDAASHYEKA 1312
                  789***********************9 PP

  == domain 20  score: 8.8 bits;  conditional E-value: 0.0024
       TPR_2    5 ynlGlayyklgdyeeAleafekAleldPn 33  
                  y l   y+k+++y eA++ + k+l  +P+
  KOO20920.1 1325 YKLSFNYLKAKKYVEAIDVCHKVLGQYPD 1353
                  779999*****************999887 PP

>> TPR_16  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.0   0.1    0.0013         1      12      62 ..     178     227 ..     176     230 .. 0.84
   2 !    8.8   0.1    0.0032       2.5       3      26 ..     239     262 ..     237     267 .. 0.90
   3 ?    5.5   0.6     0.035        27      17      65 ..     509     554 ..     505     557 .. 0.84
   4 ?    5.5   3.9     0.034        27       2      61 ..     528     584 ..     527     588 .. 0.91
   5 !    8.5   1.1    0.0041       3.2       2      63 ..     562     623 ..     561     629 .. 0.83
   6 !   13.6   0.1   0.00011     0.082       2      60 ..     672     730 ..     671     738 .. 0.94
   7 !   20.5   2.1   7.5e-07   0.00058       2      68 .]     743     806 ..     742     806 .. 0.96
   8 !   16.6   2.7   1.2e-05    0.0091       4      60 ..     813     866 ..     811     874 .. 0.84
   9 ?    5.8   5.7     0.029        23      22      67 ..     941     983 ..     900     984 .. 0.88
  10 !   16.3   3.6   1.5e-05     0.012       3      53 ..     956    1003 ..     954    1020 .. 0.90
  11 ?    4.1   2.7     0.096        75       1      61 [.     988    1049 ..     988    1055 .. 0.88
  12 ?    5.4   0.5     0.038        30      12      67 ..    1037    1089 ..    1027    1090 .. 0.60
  13 ?    1.7   0.5      0.53   4.1e+02       3      27 ..    1099    1123 ..    1097    1126 .. 0.87
  14 ?    0.4   0.0       1.4   1.1e+03      13      32 ..    1157    1176 ..    1156    1188 .. 0.77
  15 ?   -0.2   0.1       2.1   1.6e+03      10      59 ..    1191    1237 ..    1189    1244 .. 0.83
  16 !   15.0   0.0   3.8e-05      0.03       1      60 [.    1256    1312 ..    1256    1314 .. 0.96
  17 ?    2.2   0.0      0.37   2.9e+02      38      68 .]    1325    1355 ..    1316    1356 .. 0.82

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.0013
      TPR_16  12 dyddAaaaleaalkrdpssPdaaeAllllgdaalrqgrlaeAaalyraalr 62 
                 ++++A+  +e+a+ ++++   + +A+++ + +a  qg++ +A++ + + ++
  KOO20920.1 178 EFEAAESFFEQAIQAGGGAK-DLDAMMGIAKLASMQGNHRGALDKLSEVIG 227
                 577777778*******7776.8********************988777665 PP

  == domain 2  score: 8.8 bits;  conditional E-value: 0.0032
      TPR_16   3 laraalragdyddAaaaleaalkr 26 
                 +a+ +l++gd+++A++ ++++l++
  KOO20920.1 239 KALVLLNLGDWEQAVETAQRVLAQ 262
                 7999******************97 PP

  == domain 3  score: 5.5 bits;  conditional E-value: 0.035
      TPR_16  17 aaaleaalkrdpssPdaaeAllllgdaalrqgrlaeAaalyraalraap 65 
                  ++l+++ k     P   ++++ l++a++ + ++++A+  + + ++a+p
  KOO20920.1 509 TRVLHEVAKHS---PGLLDSQMQLARAHYLRADYEAALRCCSSIAKADP 554
                 57788888888...99999******************977777777766 PP

  == domain 4  score: 5.5 bits;  conditional E-value: 0.034
      TPR_16   2 alaraalragdyddAaaaleaalkrdpssPdaaeAllllgdaalrqgrlaeAaalyraal 61 
                 +lara++ + dy++A++      k+d   P  a+A+ll ++++l++     A a++++al
  KOO20920.1 528 QLARAHYLRADYEAALRCCSSIAKAD---PTFADAALLHAQILLKLDKTRQAGAVLDSAL 584
                 68999*********************...99999************88888889999887 PP

  == domain 5  score: 8.5 bits;  conditional E-value: 0.0041
      TPR_16   2 alaraalragdyddAaaaleaalkrdpssPdaaeAllllgdaalrqgrlaeAaalyraalra 63 
                  +a+++l++ + ++A a+l+ al  +    + + ++l +++++  qg++aeA+  + +a++a
  KOO20920.1 562 LHAQILLKLDKTRQAGAVLDSALSHNFAVREQPLFQLIKAQILHLQGEFAEAETMLSRAIAA 623
                 6899999999999999999888888755555888*******************999998755 PP

  == domain 6  score: 13.6 bits;  conditional E-value: 0.00011
      TPR_16   2 alaraalragdyddAaaaleaalkrdpssPdaaeAllllgdaalrqgrlaeAaalyraa 60 
                 +l +a+l++++  +A+ a  aa+  + ++P+  + + + + +  ++g+ + A++l+ra 
  KOO20920.1 672 QLVDALLAQQKVSEAQSAMAAAVVEFDGTPVEGRLQIANAKVQVVKGDIESALQLLRAI 730
                 5789****************************************************986 PP

  == domain 7  score: 20.5 bits;  conditional E-value: 7.5e-07
      TPR_16   2 alaraalragd.yddAaaaleaalkrdpssPdaaeAllllgdaalrqgrlaeAaalyraalraapdap 68 
                 ala+++l++++  ++ aa  e++ +++   P ++++++ lg+a+ +  + ++A+a+++ alr +p++p
  KOO20920.1 743 ALADLYLEHRNdKRAYAACHEEVAAAN---P-TVASYMMLGEAYMAVLEPEKAIAAFETALRKSPNDP 806
                 79999***999899999999*******...9.**********************************98 PP

  == domain 8  score: 16.6 bits;  conditional E-value: 1.2e-05
      TPR_16   4 araalragdyddAaaaleaalkrdpssPdaaeAllllgdaalrqgrlaeAaalyraa 60 
                 ++ ++    y++A++++  a ++d   P     +++l+ ++l ++r+++A   ++ +
  KOO20920.1 813 GHVLVSTHAYAKAIEYYSDAAAAD---PSKTPLRYELAALYLNLKRYDAAMTELKQL 866
                 677778888********9999999...999999*****************9655555 PP

  == domain 9  score: 5.8 bits;  conditional E-value: 0.029
      TPR_16  22 aalkrdpssPdaaeAllllgdaalrqgrlaeAaalyraalraapda 67 
                 ++  ++    +aa  +++lg ++ ++ + ++A+++y+ al++  d+
  KOO20920.1 941 QLATQQ---AVAASVAMELGALHEQLHDTDAALDAYKTALKHNEDD 983
                 455556...67999**************************998876 PP

  == domain 10  score: 16.3 bits;  conditional E-value: 1.5e-05
      TPR_16    3 laraalragdyddAaaaleaalkrdpssPdaaeAllllgdaalrqgrlaeA 53  
                  l+ ++ ++ d d+A+ a+++alk +    d+   +l+l++++l++g++++A
  KOO20920.1  956 LGALHEQLHDTDAALDAYKTALKHN---EDDEKVMLALARLHLARGEVDAA 1003
                  78889999*****************...77777*****************9 PP

  == domain 11  score: 4.1 bits;  conditional E-value: 0.096
      TPR_16    1 lalaraalragdyddAaaaleaalkrdpssPd.aaeAllllgdaalrqgrlaeAaalyraal 61  
                  lalar++l++g+ d+A+ +   +  +++ +P+   +A+ l +d+  +++++++A+  ++ +l
  KOO20920.1  988 LALARLHLARGEVDAAQQQCSSLMTLNAAPPAdLDAARILIADIMIQKSEWDAAIYHFEQLL 1049
                  79*************************99999788888889999999999999997777654 PP

  == domain 12  score: 5.4 bits;  conditional E-value: 0.038
      TPR_16   12 dyddAaaaleaalkrdpssPdaaeAllllgdaalrqgrlaeAaalyraalraapda 67  
                  ++d+A+  +e++l ++   P+   A      ++ r+gr+aeA+++++ a r +p a
  KOO20920.1 1037 EWDAAIYHFEQLLLKQ---PALFGAIAKMLSLLRRAGRMAEAIQVLKNAERSSPRA 1089
                  5666666666666666...6533333333345567777777777777776666654 PP

  == domain 13  score: 1.7 bits;  conditional E-value: 0.53
      TPR_16    3 laraalragdyddAaaaleaalkrd 27  
                  ++++a++++++++A++ l+ a++++
  KOO20920.1 1099 QGLLARYQNQPRAALRHLNMARRDG 1123
                  7999************998777765 PP

  == domain 14  score: 0.4 bits;  conditional E-value: 1.4
      TPR_16   13 yddAaaaleaalkrdpssPd 32  
                  + +A++a+e++l+  pss +
  KOO20920.1 1157 PNEAVKAAERLLREMPSSAR 1176
                  579**********9866554 PP

  == domain 15  score: -0.2 bits;  conditional E-value: 2.1
      TPR_16   10 agdyddAaaaleaalkrdpssPdaaeAllllgdaalrqgrlaeAaalyra 59  
                  +++ d+A+a+l ++l       d   Al  l +a+l ++  ++A+  +++
  KOO20920.1 1191 RNQIDRAVAMLLELLGVE---KDYLPALVCLSQAYLMLKQAPKARNHLKR 1237
                  678999999999999999...99999999999999999999999866655 PP

  == domain 16  score: 15.0 bits;  conditional E-value: 3.8e-05
      TPR_16    1 lalaraalragdyddAaaaleaalkrdpssPdaaeAllllgdaalrqgrlaeAaalyraa 60  
                  l+la+ ++  g+yd A+++  + l+++     +a A+ +lg++  +   +++Aa  y++a
  KOO20920.1 1256 LMLADVYIVGGKYDLAEELCWRCLASN---KSCAKAWEFLGVVKEKEAAYKDAASHYEKA 1312
                  79*************************...99**********************999876 PP

  == domain 17  score: 2.2 bits;  conditional E-value: 0.37
      TPR_16   38 lllgdaalrqgrlaeAaalyraalraapdap 68  
                  + l   +l+++ + eA++++ + l+++pd+p
  KOO20920.1 1325 YKLSFNYLKAKKYVEAIDVCHKVLGQYPDYP 1355
                  5566678889999999999999999999987 PP

>> ANAPC3  Anaphase-promoting complex, cyclosome, subunit 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.9   0.0     0.019        15      28      49 ..     238     259 ..     196     269 .. 0.85
   2 ?    1.5   0.0      0.45   3.5e+02      20      51 ..     351     383 ..     338     412 .. 0.80
   3 !   25.9   1.8   1.1e-08   8.4e-06      17      81 ..     517     582 ..     501     583 .. 0.88
   4 ?    1.9   0.0      0.35   2.7e+02      27      49 ..     598     620 ..     586     630 .. 0.77
   5 ?    3.3   0.1      0.12        96      30      67 ..     711     744 ..     707     751 .. 0.83
   6 ?    5.5   1.8     0.026        20      11      81 ..     726     797 ..     717     798 .. 0.81
   7 !   14.5   1.4     4e-05     0.031       7      80 ..     790     864 ..     789     866 .. 0.82
   8 ?    0.4   0.3      0.99   7.7e+02      24      49 ..     889     914 ..     886     932 .. 0.68
   9 !   13.3   0.9   9.3e-05     0.073       4      81 ..     965    1047 ..     962    1048 .. 0.86
  10 ?   -0.2   0.0       1.6   1.2e+03      33      55 ..    1066    1086 ..    1063    1116 .. 0.78
  11 !    9.6   0.3    0.0013         1       7      81 ..    1159    1237 ..    1157    1238 .. 0.88
  12 ?    4.8   1.8     0.043        34      28      81 ..    1257    1311 ..    1251    1312 .. 0.95
  13 ?    2.8   1.3      0.18   1.4e+02      39      78 ..    1302    1343 ..    1297    1347 .. 0.51

  Alignments for each domain:
  == domain 1  score: 5.9 bits;  conditional E-value: 0.019
                 HHHHHHHHTT-HHHHHHHHHCT CS
      ANAPC3  28 llAlclylngqykrAyellrka 49 
                  +Al+l+++g++++A e +++ 
  KOO20920.1 238 EKALVLLNLGDWEQAVETAQRV 259
                 579*************999988 PP

  == domain 2  score: 1.5 bits;  conditional E-value: 0.45
                 H--HHHHHHHHHHHHHTT-HHHHHHHHHCT.SH CS
      ANAPC3  20 tespedayllAlclylngqykrAyellrka.kl 51 
                 ++ +e a   A+ l l+++++ A+++l++a  l
  KOO20920.1 351 PDKAEYAAENAYQLMLLEDHQGAMQVLKRAsSL 383
                 5556666677999****************9333 PP

  == domain 3  score: 25.9 bits;  conditional E-value: 1.1e-08
                 .HHH--HHHHHHHHHHHHHTT-HHHHHHHHHCT.SHHHC-HHHHHHHHHHHHHTT-HHHHHHHH-S CS
      ANAPC3  17 aaetespedayllAlclylngqykrAyellrka.klnskslgcrylfAqcllkLkkyeeAiaaLek 81 
                 + ++  +++ + lA ++yl+ +y+ A++ +++  k +++   +++l+Aq llkL+k  +A a+L++
  KOO20920.1 517 KHSPGLLDSQMQLARAHYLRADYEAALRCCSSIaKADPTFADAALLHAQILLKLDKTRQAGAVLDS 582
                 577888999************************99999999*******************999975 PP

  == domain 4  score: 1.9 bits;  conditional E-value: 0.35
                 HHHHHHHHHTT-HHHHHHHHHCT CS
      ANAPC3  27 yllAlclylngqykrAyellrka 49 
                 + +A+ l l+g++ +A + l++a
  KOO20920.1 598 LIKAQILHLQGEFAEAETMLSRA 620
                 45699999999999999998887 PP

  == domain 5  score: 3.3 bits;  conditional E-value: 0.12
                 HHHHHHTT-HHHHHHHHHCTSHHHC-HHHHHHHHHHHH CS
      ANAPC3  30 AlclylngqykrAyellrkaklnskslgcrylfAqcll 67 
                 A++    g+ ++A++llr       s+ ++y +A+ +l
  KOO20920.1 711 AKVQVVKGDIESALQLLRAI----PSESAHYHAARKAL 744
                 66677789************....9999*****96444 PP

  == domain 6  score: 5.5 bits;  conditional E-value: 0.026
                 HHHHHH.HHH--HHHHHHHHHHHHHTT-HHHHHHHHHCT.SHHHC-HHHHHHHHHHHHHTT-HHHHHHHH-S CS
      ANAPC3  11 laerllaaetespedayllAlclylngqykrAyellrka.klnskslgcrylfAqcllkLkkyeeAiaaLek 81 
                 l+  + + +++ + ++ +lA  +++  + krAy  +++    ++ + ++ + +++++ +  + e+Aiaa+e 
  KOO20920.1 726 LLRAIPSESAHYHAARKALADLYLEHRNDKRAYAACHEEvAAANPTVASYMMLGEAYMAVLEPEKAIAAFET 797
                 4444444455556667789********************9999***************999******99985 PP

  == domain 7  score: 14.5 bits;  conditional E-value: 4e-05
                 HHHHHHHHHH.HHH--HHH...HHHHHHHHHHTT-HHHHHHHHHCT.SHHHC-HHHHHHHHHHHHHTT-HHHHHHHH- CS
      ANAPC3   7 nAiflaerllaaetesped...ayllAlclylngqykrAyellrka.klnskslgcrylfAqcllkLkkyeeAiaaLe 80 
                 +Ai  +e +l   ++sp+d   a   + +l ++  y +A+e++++a   +++    ry +A  +l Lk+y+ A + L+
  KOO20920.1 790 KAIAAFETAL---RKSPNDpvlASRIGHVLVSTHAYAKAIEYYSDAaAADPSKTPLRYELAALYLNLKRYDAAMTELK 864
                 5777777777...6666662115557********************88888888******************999886 PP

  == domain 8  score: 0.4 bits;  conditional E-value: 0.99
                 HHHHHHHHHHHHTT-HHHHHHHHHCT CS
      ANAPC3  24 edayllAlclylngqykrAyellrka 49 
                 eda+l  ++l l+ + ++A++ l +a
  KOO20920.1 889 EDALLVTKALQLQAKVHKALNALPEA 914
                 56777777777777777777777666 PP

  == domain 9  score: 13.3 bits;  conditional E-value: 9.3e-05
                  -HHHHHHHHHHHH.HHH--HHHHHH.HHHHHHHTT-HHHHHHHHHCT.SHHHC-H....HHHHHHHHHHHHTT-HHHHHHHH-S CS
      ANAPC3    4 nyknAiflaerllaaetespedayl.lAlclylngqykrAyellrka.klnsksl....gcrylfAqcllkLkkyeeAiaaLek 81  
                  +++ A+  +  +l +++e++e ++l lA  ++ +g+ + A++ ++++  ln   +    ++r+l+A   ++ ++++ Ai ++e 
  KOO20920.1  965 DTDAALDAYKTAL-KHNEDDEKVMLaLARLHLARGEVDAAQQQCSSLmTLNAAPPadldAARILIADIMIQKSEWDAAIYHFEQ 1047
                  5666666677777.7788888888868********************999988888999**********************986 PP

  == domain 10  score: -0.2 bits;  conditional E-value: 1.6
                  HHHTT-HHHHHHHHHCTSHHHC- CS
      ANAPC3   33 lylngqykrAyellrkaklnsks 55  
                  l ++g+  +A+++l++a  + +s
  KOO20920.1 1066 LRRAGRMAEAIQVLKNA--ERSS 1086
                  56788888888888888..3344 PP

  == domain 11  score: 9.6 bits;  conditional E-value: 0.0013
                  HHHHHHHHHH.HHH--HHHHHHHHHHHHHTT-...HHHHHHHHHCT.SHHHC-HHHHHHHHHHHHHTT-HHHHHHHH-S CS
      ANAPC3    7 nAiflaerllaaetespedayllAlclylngq...ykrAyellrka.klnskslgcrylfAqcllkLkkyeeAiaaLek 81  
                  +A+  aerll  ++ s+    l ++ l+ +++    +rA   l ++ + ++  l +++++ q++l Lk+  +A+++L++
  KOO20920.1 1159 EAVKAAERLLREMPSSARREVLECYMLLATKErnqIDRAVAMLLELlGVEKDYLPALVCLSQAYLMLKQAPKARNHLKR 1237
                  7999******7777777778888999998766666***********99999999**********************986 PP

  == domain 12  score: 4.8 bits;  conditional E-value: 0.043
                  HHHHHHHHTT-HHHHHHHHHCT.SHHHC-HHHHHHHHHHHHHTT-HHHHHHHH-S CS
      ANAPC3   28 llAlclylngqykrAyellrka.klnskslgcrylfAqcllkLkkyeeAiaaLek 81  
                  +lA ++   g+y+ A el+ ++  +n++  +++  ++ +  k   y++A +++ek
  KOO20920.1 1257 MLADVYIVGGKYDLAEELCWRClASNKSCAKAWEFLGVVKEKEAAYKDAASHYEK 1311
                  68**************************************************998 PP

  == domain 13  score: 2.8 bits;  conditional E-value: 0.18
                  HHHHHHHHHCT..SHHHC-HHHHHHHHHHHHHTT-HHHHHHH CS
      ANAPC3   39 ykrAyellrka..klnskslgcrylfAqcllkLkkyeeAiaa 78  
                  yk A   ++ka   +n+ s ++ y +   +lk kky eAi++
  KOO20920.1 1302 YKDAASHYEKAwgFENEASAAVGYKLSFNYLKAKKYVEAIDV 1343
                  444444444442334444445555555556666666666665 PP

>> TPR_8  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.2   0.1      0.17   1.3e+02      16      29 ..     178     191 ..     175     192 .. 0.89
   2 ?    5.0   0.0     0.043        34       2      28 ..     234     260 ..     233     265 .. 0.89
   3 ?    0.8   0.0      0.97   7.5e+02      13      31 ..     366     384 ..     362     386 .. 0.88
   4 ?    0.5   0.1       1.2   9.2e+02       3      32 ..     525     554 ..     523     556 .. 0.82
   5 ?    0.6   0.0       1.1   8.6e+02       2      29 ..     558     585 ..     557     587 .. 0.87
   6 ?    2.8   0.1      0.22   1.7e+02       7      29 ..     600     622 ..     597     625 .. 0.90
   7 !   10.5   0.0   0.00073      0.57       3      33 ..     774     804 ..     772     805 .. 0.90
   8 ?    4.7   0.0     0.053        41       6      33 ..     811     838 ..     810     839 .. 0.88
   9 !   11.9   0.3   0.00027      0.21       3      28 ..     842     867 ..     840     870 .. 0.90
  10 ?    6.2   0.1     0.018        14       5      32 ..     954     981 ..     950     983 .. 0.86
  11 ?   -0.7   0.0       2.9   2.2e+03       3      23 ..     986    1006 ..     984    1016 .. 0.82
  12 ?    3.4   0.0      0.14   1.1e+02       6      32 ..    1061    1087 ..    1057    1088 .. 0.84
  13 ?    5.5   0.0      0.03        24       2      32 ..    1253    1283 ..    1252    1285 .. 0.87
  14 ?   -0.3   0.7       2.1   1.6e+03       1      27 [.    1286    1312 ..    1286    1313 .. 0.94
  15 ?   -1.6   0.1       5.8   4.5e+03       6      33 ..    1326    1353 ..    1325    1354 .. 0.72

  Alignments for each domain:
  == domain 1  score: 3.2 bits;  conditional E-value: 0.17
                 -HHHHHHHHHHHHH CS
       TPR_8  16 dyeeAkeyyekale 29 
                 ++e+A++++e+a++
  KOO20920.1 178 EFEAAESFFEQAIQ 191
                 79**********96 PP

  == domain 2  score: 5.0 bits;  conditional E-value: 0.043
                 CHHHHHHHHHHHTT-HHHHHHHHHHHH CS
       TPR_8   2 eayynlgsiylklgdyeeAkeyyekal 28 
                 +a+  +++++l+lgd e+A+e+ +++l
  KOO20920.1 234 PALAEKALVLLNLGDWEQAVETAQRVL 260
                 68899****************999887 PP

  == domain 3  score: 0.8 bits;  conditional E-value: 0.97
                 HTT-HHHHHHHHHHHHHHH CS
       TPR_8  13 klgdyeeAkeyyekaleld 31 
                  l+d++ A++++++a +l+
  KOO20920.1 366 LLEDHQGAMQVLKRASSLE 384
                 689************9997 PP

  == domain 4  score: 0.5 bits;  conditional E-value: 1.2
                 HHHHHHHHHHHTT-HHHHHHHHHHHHHHHH CS
       TPR_8   3 ayynlgsiylklgdyeeAkeyyekaleldp 32 
                 + ++l++++    dye+A  ++    ++dp
  KOO20920.1 525 SQMQLARAHYLRADYEAALRCCSSIAKADP 554
                 678999999999******999877777777 PP

  == domain 5  score: 0.6 bits;  conditional E-value: 1.1
                 CHHHHHHHHHHHTT-HHHHHHHHHHHHH CS
       TPR_8   2 eayynlgsiylklgdyeeAkeyyekale 29 
                 +a ++ ++i+lkl +  +A +++  al+
  KOO20920.1 558 DAALLHAQILLKLDKTRQAGAVLDSALS 585
                 667789*************999988875 PP

  == domain 6  score: 2.8 bits;  conditional E-value: 0.22
                 HHHHHHHTT-HHHHHHHHHHHHH CS
       TPR_8   7 lgsiylklgdyeeAkeyyekale 29 
                 +++i++ +g++ eA+  + +a+ 
  KOO20920.1 600 KAQILHLQGEFAEAETMLSRAIA 622
                 79****************99986 PP

  == domain 7  score: 10.5 bits;  conditional E-value: 0.00073
                 HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH CS
       TPR_8   3 ayynlgsiylklgdyeeAkeyyekaleldpd 33 
                 +y++lg +y+   + e+A++++e al+ +p+
  KOO20920.1 774 SYMMLGEAYMAVLEPEKAIAAFETALRKSPN 804
                 8************************986665 PP

  == domain 8  score: 4.7 bits;  conditional E-value: 0.053
                 HHHHHHHHTT-HHHHHHHHHHHHHHHHH CS
       TPR_8   6 nlgsiylklgdyeeAkeyyekaleldpd 33 
                 ++g+++ ++  y +A+eyy  a  +dp+
  KOO20920.1 811 RIGHVLVSTHAYAKAIEYYSDAAAADPS 838
                 58899999999***********999996 PP

  == domain 9  score: 11.9 bits;  conditional E-value: 0.00027
                 HHHHHHHHHHHTT-HHHHHHHHHHHH CS
       TPR_8   3 ayynlgsiylklgdyeeAkeyyekal 28 
                 + y l+ +yl+l++y++A+  +++ +
  KOO20920.1 842 LRYELAALYLNLKRYDAAMTELKQLI 867
                 6799******************9987 PP

  == domain 10  score: 6.2 bits;  conditional E-value: 0.018
                 HHHHHHHHHTT-HHHHHHHHHHHHHHHH CS
       TPR_8   5 ynlgsiylklgdyeeAkeyyekaleldp 32 
                 + lg ++++l d ++A  +y+ al+ ++
  KOO20920.1 954 MELGALHEQLHDTDAALDAYKTALKHNE 981
                 67999*******************9665 PP

  == domain 11  score: -0.7 bits;  conditional E-value: 2.9
                  HHHHHHHHHHHTT-HHHHHHH CS
       TPR_8    3 ayynlgsiylklgdyeeAkey 23  
                  +++ l++++l  g+ ++A++ 
  KOO20920.1  986 VMLALARLHLARGEVDAAQQQ 1006
                  6789**************975 PP

  == domain 12  score: 3.4 bits;  conditional E-value: 0.14
                  HHHHHHHHTT-HHHHHHHHHHHHHHHH CS
       TPR_8    6 nlgsiylklgdyeeAkeyyekaleldp 32  
                  ++ s+++  g++ eA+++++ a + +p
  KOO20920.1 1061 KMLSLLRRAGRMAEAIQVLKNAERSSP 1087
                  66789999***********99877666 PP

  == domain 13  score: 5.5 bits;  conditional E-value: 0.03
                  CHHHHHHHHHHHTT-HHHHHHHHHHHHHHHH CS
       TPR_8    2 eayynlgsiylklgdyeeAkeyyekaleldp 32  
                  + +++l+++y+  g+y+ A+e + ++l  ++
  KOO20920.1 1253 RGWLMLADVYIVGGKYDLAEELCWRCLASNK 1283
                  67*******************9888887666 PP

  == domain 14  score: -0.3 bits;  conditional E-value: 2.1
                  CCHHHHHHHHHHHTT-HHHHHHHHHHH CS
       TPR_8    1 aeayynlgsiylklgdyeeAkeyyeka 27  
                  a+a+  lg + +k   y+ A + yeka
  KOO20920.1 1286 AKAWEFLGVVKEKEAAYKDAASHYEKA 1312
                  789999********************8 PP

  == domain 15  score: -1.6 bits;  conditional E-value: 5.8
                  HHHHHHHHTT-HHHHHHHHHHHHHHHHH CS
       TPR_8    6 nlgsiylklgdyeeAkeyyekaleldpd 33  
                  +l+  ylk ++y eA+ ++ k+l   pd
  KOO20920.1 1326 KLSFNYLKAKKYVEAIDVCHKVLGQYPD 1353
                  5666688888888888888887776665 PP

>> TPR_17  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.0       7.6   5.9e+03      12      33 ..     198     219 ..     186     220 .. 0.83
   2 ?    4.0   0.1     0.098        76      14      34 .]     234     254 ..     228     254 .. 0.89
   3 ?   -0.3   0.1       2.3   1.8e+03       6      33 ..     516     543 ..     514     544 .. 0.84
   4 ?    5.5   0.1     0.033        25       6      32 ..     550     576 ..     538     578 .. 0.85
   5 ?    2.7   0.0      0.26     2e+02       2      24 ..     795     817 ..     794     827 .. 0.77
   6 !   10.9   1.4   0.00063      0.49       2      32 ..     829     859 ..     828     860 .. 0.94
   7 !   13.6   0.1   8.5e-05     0.066       1      34 []     972    1005 ..     972    1005 .. 0.97
   8 ?   -0.3   0.1       2.4   1.9e+03      10      33 ..    1209    1232 ..    1201    1233 .. 0.85
   9 ?   -1.8   0.0       7.2   5.6e+03      16      34 .]    1255    1273 ..    1254    1273 .. 0.90

  Alignments for each domain:
  == domain 1  score: -1.9 bits;  conditional E-value: 7.6
      TPR_17  12 nadaynnLAelllknGdlmtAr 33 
                 + da+   A+l +++G+++ A+
  KOO20920.1 198 DLDAMMGIAKLASMQGNHRGAL 219
                 668888999********99885 PP

  == domain 2  score: 4.0 bits;  conditional E-value: 0.098
      TPR_17  14 daynnLAelllknGdlmtArq 34 
                 +a+ ++A +ll++Gd+++A++
  KOO20920.1 234 PALAEKALVLLNLGDWEQAVE 254
                 578999************975 PP

  == domain 3  score: -0.3 bits;  conditional E-value: 2.3
      TPR_17   6 leldPnnadaynnLAelllknGdlmtAr 33 
                 +++ P   d+  +LA++++ + d++ A+
  KOO20920.1 516 AKHSPGLLDSQMQLARAHYLRADYEAAL 543
                 6788888899999****99999999986 PP

  == domain 4  score: 5.5 bits;  conditional E-value: 0.033
      TPR_17   6 leldPnnadaynnLAelllknGdlmtA 32 
                 ++ dP+ ada  + A++llk+ ++++A
  KOO20920.1 550 AKADPTFADAALLHAQILLKLDKTRQA 576
                 4568*******************9998 PP

  == domain 5  score: 2.7 bits;  conditional E-value: 0.26
      TPR_17   2 ylkaleldPnnadaynnLAelll 24 
                 ++ al++ Pn++++    + +l 
  KOO20920.1 795 FETALRKSPNDPVLASRIGHVLV 817
                 89**********99887777765 PP

  == domain 6  score: 10.9 bits;  conditional E-value: 0.00063
      TPR_17   2 ylkaleldPnnadaynnLAelllknGdlmtA 32 
                 y  a++ dP+  ++ ++LA l+l++++++ A
  KOO20920.1 829 YSDAAAADPSKTPLRYELAALYLNLKRYDAA 859
                 88999***********************988 PP

  == domain 7  score: 13.6 bits;  conditional E-value: 8.5e-05
      TPR_17    1 lylkaleldPnnadaynnLAelllknGdlmtArq 34  
                  +y+ al+++ ++ +++  LA+l+l +G+ + A+q
  KOO20920.1  972 AYKTALKHNEDDEKVMLALARLHLARGEVDAAQQ 1005
                  59******************************98 PP

  == domain 8  score: -0.3 bits;  conditional E-value: 2.4
      TPR_17   10 PnnadaynnLAelllknGdlmtAr 33  
                  +++ +a+  L +++l++++  +Ar
  KOO20920.1 1209 KDYLPALVCLSQAYLMLKQAPKAR 1232
                  66778999***********99987 PP

  == domain 9  score: -1.8 bits;  conditional E-value: 7.2
      TPR_17   16 ynnLAelllknGdlmtArq 34  
                  + +LA ++   G+++ A++
  KOO20920.1 1255 WLMLADVYIVGGKYDLAEE 1273
                  899******99***99986 PP

>> TPR_6  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.5   0.0     0.039        30       1      30 [.     200     229 ..     200     230 .. 0.93
   2 !   11.6   0.0   0.00043      0.34       2      29 ..     235     262 ..     234     265 .. 0.87
   3 ?    5.5   0.2     0.038        30       1      30 [.     524     553 ..     524     555 .. 0.81
   4 ?    0.1   0.1       2.1   1.6e+03       1      26 [.     558     583 ..     558     586 .. 0.86
   5 ?   -1.2   0.1       5.3   4.2e+03       7      27 ..     601     621 ..     595     623 .. 0.74
   6 !   14.0   0.1     8e-05     0.062       2      32 ..     774     804 ..     773     805 .. 0.94
   7 ?    6.7   2.2     0.016        13       4      27 ..     844     867 ..     842     869 .. 0.93
   8 ?   -0.2   0.2       2.6     2e+03       2      27 ..     897     922 ..     896     927 .. 0.85
   9 ?    2.2   0.0      0.43   3.3e+02       5      28 ..     955     978 ..     952     980 .. 0.83
  10 ?    0.5   0.1       1.5   1.2e+03       2      21 ..     986    1005 ..     985    1012 .. 0.84
  11 ?    2.8   0.1       0.3   2.3e+02       5      31 ..    1027    1053 ..    1023    1054 .. 0.85
  12 ?    0.7   0.0       1.3     1e+03      10      26 ..    1065    1082 ..    1062    1088 .. 0.71
  13 ?   -1.8   0.1       8.4   6.5e+03       7      26 ..    1100    1119 ..    1099    1122 .. 0.77
  14 ?    0.9   0.0       1.2   9.1e+02      16      33 .]    1157    1174 ..    1153    1174 .. 0.84
  15 ?    1.7   0.1      0.62   4.9e+02       7      28 ..    1219    1240 ..    1214    1242 .. 0.88
  16 ?   -1.5   0.0       6.5   5.1e+03       4      21 ..    1256    1273 ..    1254    1274 .. 0.86
  17 !    7.4   0.0    0.0096       7.5       4      32 ..    1325    1353 ..    1322    1354 .. 0.94

  Alignments for each domain:
  == domain 1  score: 5.5 bits;  conditional E-value: 0.039
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHH- CS
       TPR_6   1 dAlyklalsyrklgdtdkAlealerlikeY 30 
                 dA++ +a++  ++g+++ Al+ l ++i  Y
  KOO20920.1 200 DAMMGIAKLASMQGNHRGALDKLSEVIGLY 229
                 89**********************999776 PP

  == domain 2  score: 11.6 bits;  conditional E-value: 0.00043
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
       TPR_6   2 AlyklalsyrklgdtdkAlealerlike 29 
                 Al   al +++lgd+++A+e+ +r++ +
  KOO20920.1 235 ALAEKALVLLNLGDWEQAVETAQRVLAQ 262
                 5666799999999************975 PP

  == domain 3  score: 5.5 bits;  conditional E-value: 0.038
                 HHHHHHHHHHHH.HHHHHHHHHHHHHHHHH- CS
       TPR_6   1 dAlyklalsyrk.lgdtdkAlealerlikeY 30 
                 d++++la++++  + d+++Al+   ++ k  
  KOO20920.1 524 DSQMQLARAHYLrA-DYEAALRCCSSIAKAD 553
                 6789*******956.******9877776655 PP

  == domain 4  score: 0.1 bits;  conditional E-value: 2.1
                 HHHHHHHHHHHHHHHHHHHHHHHHHH CS
       TPR_6   1 dAlyklalsyrklgdtdkAlealerl 26 
                 dA ++ a+ ++kl++t++A + l++ 
  KOO20920.1 558 DAALLHAQILLKLDKTRQAGAVLDSA 583
                 688999******99*****9888765 PP

  == domain 5  score: -1.2 bits;  conditional E-value: 5.3
                 HHHHHHHHHHHHHHHHHHHHH CS
       TPR_6   7 alsyrklgdtdkAlealerli 27 
                 a+ +  +g+ ++A ++l r i
  KOO20920.1 601 AQILHLQGEFAEAETMLSRAI 621
                 555555799****99999987 PP

  == domain 6  score: 14.0 bits;  conditional E-value: 8e-05
                 HHHHHHHHHHH.HHHHHHHHHHHHHHHHH-TT CS
       TPR_6   2 Alyklalsyrk.lgdtdkAlealerlikeYPd 32 
                 ++++l+++y + l +++kA++a+e  +++ P+
  KOO20920.1 774 SYMMLGEAYMAvL-EPEKAIAAFETALRKSPN 804
                 5789*********.*****************8 PP

  == domain 7  score: 6.7 bits;  conditional E-value: 0.016
                 HHHHHHHHHHHHHHHHHHHHHHHH CS
       TPR_6   4 yklalsyrklgdtdkAlealerli 27 
                 y la +y++l+++d+A++ l++li
  KOO20920.1 844 YELAALYLNLKRYDAAMTELKQLI 867
                 99*********************9 PP

  == domain 8  score: -0.2 bits;  conditional E-value: 2.6
                 HHHHHHHHHHHHHHHHHHHHHHHHHH CS
       TPR_6   2 AlyklalsyrklgdtdkAlealerli 27 
                 Al ++a+ +++l+   +Aleal +  
  KOO20920.1 897 ALQLQAKVHKALNALPEALEALHQAQ 922
                 6778999999999999*****99875 PP

  == domain 9  score: 2.2 bits;  conditional E-value: 0.43
                 HHHHHHHH.HHHHHHHHHHHHHHHH CS
       TPR_6   5 klalsyrk.lgdtdkAlealerlik 28 
                  l+ ++++   dtd+Al+a++  +k
  KOO20920.1 955 ELGALHEQlH-DTDAALDAYKTALK 978
                 5788899956.*********98876 PP

  == domain 10  score: 0.5 bits;  conditional E-value: 1.5
                  HHHHHHHHHHHHHHHHHHHH CS
       TPR_6    2 AlyklalsyrklgdtdkAle 21  
                  +++ la+++++ g+ d+A +
  KOO20920.1  986 VMLALARLHLARGEVDAAQQ 1005
                  68899*****989***9987 PP

  == domain 11  score: 2.8 bits;  conditional E-value: 0.3
                  HHHHHHHHHHHHHHHHHHHHHHHHH-T CS
       TPR_6    5 klalsyrklgdtdkAlealerlikeYP 31  
                  ++a  +++  ++d+A+  +e+l+ + P
  KOO20920.1 1027 LIADIMIQKSEWDAAIYHFEQLLLKQP 1053
                  7889999867************98887 PP

  == domain 12  score: 0.7 bits;  conditional E-value: 1.3
                  HHH.HHHHHHHHHHHHHH CS
       TPR_6   10 yrk.lgdtdkAlealerl 26  
                  +++ +g+ ++A++ l++ 
  KOO20920.1 1065 LLRrAGRMAEAIQVLKNA 1082
                  343378*******99876 PP

  == domain 13  score: -1.8 bits;  conditional E-value: 8.4
                  HHHHHHHHHHHHHHHHHHHH CS
       TPR_6    7 alsyrklgdtdkAlealerl 26  
                  +l+ r ++++++Al+ l+  
  KOO20920.1 1100 GLLARYQNQPRAALRHLNMA 1119
                  66777788*****9998876 PP

  == domain 14  score: 0.9 bits;  conditional E-value: 1.2
                  HHHHHHHHHHHHHH-TT- CS
       TPR_6   16 tdkAlealerlikeYPdS 33  
                  + +A++a erl++e P S
  KOO20920.1 1157 PNEAVKAAERLLREMPSS 1174
                  679*********997765 PP

  == domain 15  score: 1.7 bits;  conditional E-value: 0.62
                  HHHHHHHHHHHHHHHHHHHHHH CS
       TPR_6    7 alsyrklgdtdkAlealerlik 28  
                   ++y++l+++ kA+  l+r+ k
  KOO20920.1 1219 SQAYLMLKQAPKARNHLKRVAK 1240
                  67999999**********9976 PP

  == domain 16  score: -1.5 bits;  conditional E-value: 6.5
                  HHHHHHHHHHHHHHHHHH CS
       TPR_6    4 yklalsyrklgdtdkAle 21  
                  ++la  y+ +g++d A e
  KOO20920.1 1256 LMLADVYIVGGKYDLAEE 1273
                  899******99**99965 PP

  == domain 17  score: 7.4 bits;  conditional E-value: 0.0096
                  HHHHHHHHHHHHHHHHHHHHHHHHHH-TT CS
       TPR_6    4 yklalsyrklgdtdkAlealerlikeYPd 32  
                  ykl   y+k++++ +A++   +++ +YPd
  KOO20920.1 1325 YKLSFNYLKAKKYVEAIDVCHKVLGQYPD 1353
                  899999***99*****************9 PP

>> TPR_7  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.2   0.0       1.8   1.4e+03       5      32 ..       6      31 ..       4      36 .. 0.73
   2 ?    2.1   0.0      0.32   2.5e+02      14      26 ..     178     190 ..     176     199 .. 0.84
   3 !   10.0   0.1   0.00097      0.76       3      30 ..     237     264 ..     235     269 .. 0.75
   4 ?    2.4   0.4      0.25   1.9e+02       4      22 ..     528     546 ..     527     548 .. 0.92
   5 ?    2.3   0.0      0.27   2.1e+02       6      28 ..     601     621 ..     599     626 .. 0.85
   6 !   10.4   0.0   0.00071      0.55       2      35 ..     775     806 ..     774     807 .. 0.93
   7 ?    2.0   0.0      0.35   2.7e+02       6      32 ..     813     837 ..     808     840 .. 0.71
   8 ?    2.2   0.9      0.29   2.3e+02       4      27 ..     845     868 ..     842     876 .. 0.88
   9 ?   -1.2   0.2       3.6   2.8e+03       4      23 ..     914     933 ..     910     943 .. 0.78
  10 !    6.9   0.3    0.0093       7.3       5      32 ..     956     983 ..     954     987 .. 0.79
  11 ?    1.9   0.1      0.36   2.8e+02       3      18 ..     988    1003 ..     986    1007 .. 0.89
  12 ?    0.8   0.0      0.79   6.1e+02       5      28 ..    1028    1049 ..    1026    1054 .. 0.78
  13 ?    2.4   0.0      0.26     2e+02       8      31 ..    1065    1086 ..    1063    1089 .. 0.84
  14 ?   -0.2   0.0       1.7   1.3e+03       3      27 ..    1256    1280 ..    1255    1286 .. 0.81
  15 ?    3.5   0.0      0.12        90       2      24 ..    1289    1311 ..    1288    1320 .. 0.86

  Alignments for each domain:
  == domain 1  score: -0.2 bits;  conditional E-value: 1.8
       TPR_7  5 LarlysrlGdyeeAielyeqsLaltkdp 32
                L + y rlG+y+   +++ +  +l k+ 
  KOO20920.1  6 LVNYYARLGYYRHVQTVCAE--VLKKRA 31
                67889******999999998..554444 PP

  == domain 2  score: 2.1 bits;  conditional E-value: 0.32
       TPR_7  14 dyeeAielyeqsL 26 
                 ++e A++++eq++
  KOO20920.1 178 EFEAAESFFEQAI 190
                 89*********55 PP

  == domain 3  score: 10.0 bits;  conditional E-value: 0.00097
       TPR_7   3 lnLarlysrlGdyeeAielyeqsLaltk 30 
                    a +  +lGd+e+A+e  +++La  +
  KOO20920.1 237 AEKALVLLNLGDWEQAVETAQRVLAQSD 264
                 556778899*************665444 PP

  == domain 4  score: 2.4 bits;  conditional E-value: 0.25
       TPR_7   4 nLarlysrlGdyeeAiely 22 
                 +Lar++  + dye A++++
  KOO20920.1 528 QLARAHYLRADYEAALRCC 546
                 69**************996 PP

  == domain 5  score: 2.3 bits;  conditional E-value: 0.27
       TPR_7   6 arlysrlGdyeeAielyeqsLal 28 
                 a++ + +G+++eA++ + +  a+
  KOO20920.1 601 AQILHLQGEFAEAETMLSR--AI 621
                 789999*********9988..44 PP

  == domain 6  score: 10.4 bits;  conditional E-value: 0.00071
       TPR_7   2 LlnLarlysrlGdyeeAielyeqsLaltkdpeda 35 
                 +  L+++y ++ + e+Ai  +e   al+k+p+d+
  KOO20920.1 775 YMMLGEAYMAVLEPEKAIAAFET--ALRKSPNDP 806
                 6789*******************..******996 PP

  == domain 7  score: 2.0 bits;  conditional E-value: 0.35
       TPR_7   6 arlysrlGdyeeAielyeqsLaltkdp 32 
                 +++ ++   y++Aie+y    a + dp
  KOO20920.1 813 GHVLVSTHAYAKAIEYYSD--AAAADP 837
                 5556666669*******87..655555 PP

  == domain 8  score: 2.2 bits;  conditional E-value: 0.29
       TPR_7   4 nLarlysrlGdyeeAielyeqsLa 27 
                  La ly +l +y+ A + ++q++a
  KOO20920.1 845 ELAALYLNLKRYDAAMTELKQLIA 868
                 69**************99999654 PP

  == domain 9  score: -1.2 bits;  conditional E-value: 3.6
       TPR_7   4 nLarlysrlGdyeeAielye 23 
                 +L  l++++ + ++A+  ++
  KOO20920.1 914 ALEALHQAQSNQQNALAQLR 933
                 67888999999999887665 PP

  == domain 10  score: 6.9 bits;  conditional E-value: 0.0093
       TPR_7   5 LarlysrlGdyeeAielyeqsLaltkdp 32 
                 L+ l+++l d++ A++ y+ +L   +d+
  KOO20920.1 956 LGALHEQLHDTDAALDAYKTALKHNEDD 983
                 99******************55433444 PP

  == domain 11  score: 1.9 bits;  conditional E-value: 0.36
       TPR_7    3 lnLarlysrlGdyeeA 18  
                  l+Larl+ ++G+ + A
  KOO20920.1  988 LALARLHLARGEVDAA 1003
                  79**********9988 PP

  == domain 12  score: 0.8 bits;  conditional E-value: 0.79
       TPR_7    5 LarlysrlGdyeeAielyeqsLal 28  
                  +a++  +  +++ Ai ++eq+  l
  KOO20920.1 1028 IADIMIQKSEWDAAIYHFEQL--L 1049
                  566777889***********4..4 PP

  == domain 13  score: 2.4 bits;  conditional E-value: 0.26
       TPR_7    8 lysrlGdyeeAielyeqsLaltkd 31  
                  l +r G+++eAi++++   a +++
  KOO20920.1 1065 LLRRAGRMAEAIQVLKN--AERSS 1086
                  7899**********998..76665 PP

  == domain 14  score: -0.2 bits;  conditional E-value: 1.7
       TPR_7    3 lnLarlysrlGdyeeAielyeqsLa 27  
                  l La++y   G+y+ A+el+ ++La
  KOO20920.1 1256 LMLADVYIVGGKYDLAEELCWRCLA 1280
                  6789999999********9977666 PP

  == domain 15  score: 3.5 bits;  conditional E-value: 0.12
       TPR_7    2 LlnLarlysrlGdyeeAielyeq 24  
                  +  L+++ +++  y++A+++ye+
  KOO20920.1 1289 WEFLGVVKEKEAAYKDAASHYEK 1311
                  5678999999999*********9 PP

>> TPR_9  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.2   0.0       1.5   1.2e+03      43      59 ..      48      64 ..      40      78 .. 0.81
   2 !    7.1   0.1    0.0077         6      34      61 ..     238     265 ..     233     301 .. 0.81
   3 ?   -1.8   0.2       4.8   3.7e+03      22      60 ..     347     385 ..     331     390 .. 0.74
   4 !    8.4   1.4     0.003       2.3       5      59 ..     533     587 ..     529     603 .. 0.86
   5 ?   -1.1   0.1       2.8   2.2e+03      36      65 ..     601     630 ..     598     636 .. 0.83
   6 !    8.9   0.2    0.0021       1.7       4      64 ..     747     807 ..     744     816 .. 0.88
   7 !   14.2   0.7   4.6e-05     0.036       5      60 ..     816     871 ..     812     886 .. 0.89
   8 !   10.4   2.1   0.00073      0.57      33      72 ..     954     993 ..     940     994 .. 0.92
   9 ?    0.9   0.5      0.65     5e+02       4      60 ..    1031    1087 ..    1028    1092 .. 0.83

  Alignments for each domain:
  == domain 1  score: -0.2 bits;  conditional E-value: 1.5
       TPR_9 43 GclsaAladLeaylala 59
                G+  +A+++Lea+l+ a
  KOO20920.1 48 GAAGEAVRELEAMLRRA 64
                78889*********654 PP

  == domain 2  score: 7.1 bits;  conditional E-value: 0.0077
       TPR_9  34 dRGlllaqlGclsaAladLeaylalapd 61 
                 + +l+l  lG++++A++  ++ la++++
  KOO20920.1 238 EKALVLLNLGDWEQAVETAQRVLAQSDN 265
                 89****************9999999873 PP

  == domain 3  score: -1.8 bits;  conditional E-value: 4.8
       TPR_9  22 lllaPddpeerrdRGlllaqlGclsaAladLeaylalap 60 
                   +aPd +e   + +  l+ l++ ++A++ L ++ +l++
  KOO20920.1 347 CRIAPDKAEYAAENAYQLMLLEDHQGAMQVLKRASSLEE 385
                 566788888888888888888888888888888877666 PP

  == domain 4  score: 8.4 bits;  conditional E-value: 0.003
       TPR_9   5 aireedweralavverllllaPddpeerrdRGlllaqlGclsaAladLeaylala 59 
                 +  + d+e+al+++ ++   +P  ++  +  +++l +l+ +++A a L+ +l+++
  KOO20920.1 533 HYLRADYEAALRCCSSIAKADPTFADAALLHAQILLKLDKTRQAGAVLDSALSHN 587
                 555679******************************************9999875 PP

  == domain 5  score: -1.1 bits;  conditional E-value: 2.8
       TPR_9  36 GlllaqlGclsaAladLeaylalapdapda 65 
                 +++l+ +G +++A   L +++a ++ a ++
  KOO20920.1 601 AQILHLQGEFAEAETMLSRAIAAQGGAGAR 630
                 7899999************99988877665 PP

  == domain 6  score: 8.9 bits;  conditional E-value: 0.0021
       TPR_9   4 iaireedweralavverllllaPddpeerrdRGlllaqlGclsaAladLeaylalapdapd 64 
                 +++++++  ra a++   ++ a  ++  ++  G +++ +  +++A+a++e++l+++p++p 
  KOO20920.1 747 LYLEHRNDKRAYAACHEEVAAANPTVASYMMLGEAYMAVLEPEKAIAAFETALRKSPNDPV 807
                 6888888889999988888888999999999**************************8886 PP

  == domain 7  score: 14.2 bits;  conditional E-value: 4.6e-05
       TPR_9   5 aireedweralavverllllaPddpeerrdRGlllaqlGclsaAladLeaylalap 60 
                 + + + +++a++++    + +P    +r++ + l+  l ++ aA+ +L + +a ++
  KOO20920.1 816 LVSTHAYAKAIEYYSDAAAADPSKTPLRYELAALYLNLKRYDAAMTELKQLIAACG 871
                 56778899********************************************9998 PP

  == domain 8  score: 10.4 bits;  conditional E-value: 0.00073
       TPR_9  33 rdRGlllaqlGclsaAladLeaylalapdapdaeairaqL 72 
                 ++ G l++ql ++ aAl++  ++l +++d++ + ++ a+L
  KOO20920.1 954 MELGALHEQLHDTDAALDAYKTALKHNEDDEKVMLALARL 993
                 689*****************************99999998 PP

  == domain 9  score: 0.9 bits;  conditional E-value: 0.65
       TPR_9    4 iaireedweralavverllllaPddpeerrdRGlllaqlGclsaAladLeaylalap 60  
                  i+i++ +w++a+   e lll +P   + +     ll + G++++A++ L  + + +p
  KOO20920.1 1031 IMIQKSEWDAAIYHFEQLLLKQPALFGAIAKMLSLLRRAGRMAEAIQVLKNAERSSP 1087
                  78999***************9999999998888889999999999888877666665 PP

>> TPR_11  TPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.2   0.0       1.1   8.3e+02       4      16 ..     243     255 ..     240     265 .. 0.77
   2 ?   -2.4   0.0         5   3.9e+03      18      29 ..     344     355 ..     344     356 .. 0.89
   3 ?   -1.7   0.0       3.1   2.4e+03       7      23 ..     367     383 ..     362     385 .. 0.81
   4 ?   -3.0   0.0       7.7     6e+03       7      15 ..     536     544 ..     530     559 .. 0.61
   5 ?   -0.0   0.0      0.92   7.2e+02       2      22 ..     602     622 ..     601     623 .. 0.88
   6 !    8.6   0.0    0.0019       1.5      11      37 ..     789     815 ..     779     819 .. 0.86
   7 !    8.0   1.5    0.0029       2.3       1      41 [.     813     853 ..     813     854 .. 0.92
   8 ?    1.4   0.2      0.34   2.7e+02       4      22 ..     850     868 ..     849     870 .. 0.85
   9 ?   -0.9   0.2       1.7   1.3e+03       5      20 ..     906     921 ..     902     929 .. 0.79
  10 !    8.8   0.1    0.0017       1.3      10      39 ..     966     995 ..     962     998 .. 0.85
  11 ?    1.3   0.0      0.37   2.9e+02       2      21 ..    1030    1049 ..    1029    1056 .. 0.85
  12 ?    3.7   0.0     0.064        50       4      26 ..    1066    1088 ..    1064    1091 .. 0.83
  13 ?   -3.1   0.0       8.4   6.6e+03       6      38 ..    1190    1222 ..    1189    1225 .. 0.71

  Alignments for each domain:
  == domain 1  score: -0.2 bits;  conditional E-value: 1.1
      TPR_11   4 yyeqGkyeeAiea 16 
                 +  +G++e+A+e 
  KOO20920.1 243 LLNLGDWEQAVET 255
                 5668*******97 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 5
      TPR_11  18 kkAlkldPdnae 29 
                 ++A+++ Pd ae
  KOO20920.1 344 NTACRIAPDKAE 355
                 68*******998 PP

  == domain 3  score: -1.7 bits;  conditional E-value: 3.1
      TPR_11   7 qGkyeeAieaYkkAlkl 23 
                 + +  +A++++k+A  l
  KOO20920.1 367 LEDHQGAMQVLKRASSL 383
                 567889********887 PP

  == domain 4  score: -3.0 bits;  conditional E-value: 7.7
      TPR_11   7 qGkyeeAie 15 
                 + +ye+A+ 
  KOO20920.1 536 RADYEAALR 544
                 445555554 PP

  == domain 5  score: -0.0 bits;  conditional E-value: 0.92
      TPR_11   2 dayyeqGkyeeAieaYkkAlk 22 
                 ++++ qG++ eA + +++A++
  KOO20920.1 602 QILHLQGEFAEAETMLSRAIA 622
                 68999*******999999986 PP

  == domain 6  score: 8.6 bits;  conditional E-value: 0.0019
      TPR_11  11 eeAieaYkkAlkldPdnaeayynLGla 37 
                 e+Ai+a+++Al+ +P+++ + + +G++
  KOO20920.1 789 EKAIAAFETALRKSPNDPVLASRIGHV 815
                 89***************9777777766 PP

  == domain 7  score: 8.0 bits;  conditional E-value: 0.0029
      TPR_11   1 GdayyeqGkyeeAieaYkkAlkldPdnaeayynLGlayykq 41 
                 G+++++   y +Aie Y+ A + dP+   + y+L+++y+++
  KOO20920.1 813 GHVLVSTHAYAKAIEYYSDAAAADPSKTPLRYELAALYLNL 853
                 778888888*****************************875 PP

  == domain 8  score: 1.4 bits;  conditional E-value: 0.34
      TPR_11   4 yyeqGkyeeAieaYkkAlk 22 
                 y  + +y++A++++k+ ++
  KOO20920.1 850 YLNLKRYDAAMTELKQLIA 868
                 666789**********886 PP

  == domain 9  score: -0.9 bits;  conditional E-value: 1.7
      TPR_11   5 yeqGkyeeAieaYkkA 20 
                  +++ ++eA+ea+ +A
  KOO20920.1 906 KALNALPEALEALHQA 921
                 5678888999888887 PP

  == domain 10  score: 8.8 bits;  conditional E-value: 0.0017
      TPR_11  10 yeeAieaYkkAlkldPdnaeayynLGlayy 39 
                  ++A+ aYk+Alk ++d+  + ++L+ +++
  KOO20920.1 966 TDAALDAYKTALKHNEDDEKVMLALARLHL 995
                 699***************999888887765 PP

  == domain 11  score: 1.3 bits;  conditional E-value: 0.37
      TPR_11    2 dayyeqGkyeeAieaYkkAl 21  
                  d+  ++ ++++Ai ++++ l
  KOO20920.1 1030 DIMIQKSEWDAAIYHFEQLL 1049
                  777899*********99966 PP

  == domain 12  score: 3.7 bits;  conditional E-value: 0.064
      TPR_11    4 yyeqGkyeeAieaYkkAlkldPd 26  
                  ++  G+  eAi+++k+A + +P 
  KOO20920.1 1066 LRRAGRMAEAIQVLKNAERSSPR 1088
                  5678999**********987776 PP

  == domain 13  score: -3.1 bits;  conditional E-value: 8.4
      TPR_11    6 eqGkyeeAieaYkkAlkldPdnaeayynLGlay 38  
                  e+++++ A++ + + l    d+  a+ +L +ay
  KOO20920.1 1190 ERNQIDRAVAMLLELLGVEKDYLPALVCLSQAY 1222
                  689999999988887777777766666666666 PP

>> TPR_15  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.2       6.2   4.8e+03     153     177 ..     240     264 ..     235     266 .. 0.76
   2 ?    4.2   0.1     0.026        21       9      37 ..     524     551 ..     514     562 .. 0.76
   3 ?    0.7   0.2      0.32   2.5e+02     120     177 ..     567     625 ..     559     632 .. 0.68
   4 ?    1.1   0.2      0.24   1.8e+02      12      68 ..     708     759 ..     696     769 .. 0.80
   5 !   19.0   2.0   8.6e-07   0.00067     141     236 ..     767     862 ..     758     869 .. 0.86
   6 !    6.0  10.3    0.0076       5.9     200     269 ..     926    1005 ..     891    1016 .. 0.75
   7 ?    3.9   0.6     0.033        26     114     171 ..    1060    1118 ..    1019    1132 .. 0.72
   8 ?    0.5   1.3      0.36   2.8e+02     161     243 ..    1156    1241 ..    1151    1309 .. 0.72

  Alignments for each domain:
  == domain 1  score: -3.5 bits;  conditional E-value: 6.2
      TPR_15 153 aelyrqegqtdaAlrdyreAlalap 177
                 a + ++ g++++A++ ++++la ++
  KOO20920.1 240 ALVLLNLGDWEQAVETAQRVLAQSD 264
                 6677788999999999999998765 PP

  == domain 2  score: 4.2 bits;  conditional E-value: 0.026
      TPR_15   9 nealklatllykqgdvkkAlevLkeaaqk 37 
                 + +++la+ +y + d+++Al+   + ++k
  KOO20920.1 524 DSQMQLARAHYLRADYEAALRCCSS-IAK 551
                 689*****************99844.444 PP

  == domain 3  score: 0.7 bits;  conditional E-value: 0.32
      TPR_15 120 lerakdydriaellkslee.eeaaeqsaafllaraelyrqegqtdaAlrdyreAlalap 177
                 l ++ + ++ +++l s+ + + a++++++f l+ a++   +g+ ++A +++ +A+a+++
  KOO20920.1 567 LLKLDKTRQAGAVLDSALShNFAVREQPLFQLIKAQILHLQGEFAEAETMLSRAIAAQG 625
                 44555566666777775541445678888888888888888888888888888887765 PP

  == domain 4  score: 1.1 bits;  conditional E-value: 0.24
      TPR_15  12 lklatllykqgdvkkAlevLkeaaqkaapskdteyWrtladLAwalqqedearkAyr 68 
                 ++ a++   +gd++ Al+ L     +a+ps+ + y   + +LA+   + ++ ++Ay 
  KOO20920.1 708 IANAKVQVVKGDIESALQLL-----RAIPSESAHYHAARKALADLYLEHRNDKRAYA 759
                 455999999***********.....34589999999999999999888888888875 PP

  == domain 5  score: 19.0 bits;  conditional E-value: 8.6e-07
      TPR_15 141 aaeqsaafllaraelyrqegqtdaAlrdyreAlalapdsselraallWlliDlgrraeLrellkawkara...esdasLwgplaaAlllLgrpkkALey 236
                 aa+   a +++++e+y +  ++++A+ +++ Al+++p++  l +++  +l+ +  +a+   +++ + ++a    s+++L+  laa +l L+r+++A+  
  KOO20920.1 767 AANPTVASYMMLGEAYMAVLEPEKAIAAFETALRKSPNDPVLASRIGHVLVSTHAYAK---AIEYYSDAAaadPSKTPLRYELAALYLNLKRYDAAMTE 862
                 4556667889999**************************************9998885...88888888866688889*****************9865 PP

  == domain 6  score: 6.0 bits;  conditional E-value: 0.0076
      TPR_15  200 rellkawkara..........esdasLwgplaaAlllLgrpkkALeylrkqakenrkdplwllaYADaleqagradeAwr 269 
                  +++l++++a++          +  as    l+a    L ++++AL+ ++  +k n++d  ++la A  + + g++d+A++
  KOO20920.1  926 QNALAQLRAETggadqlatqqAVAASVAMELGALHEQLHDTDAALDAYKTALKHNEDDEKVMLALARLHLARGEVDAAQQ 1005
                  344555555555544444433556777788999999******************************************97 PP

  == domain 7  score: 3.9 bits;  conditional E-value: 0.033
      TPR_15  114 ssalellerakdydriaellksle.eeeaaeqsaafllaraelyrqegqtdaAlrdyre 171 
                   ++l ll ra+ + +  ++lk++e + ++a+ ++ f +  + l+r ++q+ aAlr +  
  KOO20920.1 1060 AKMLSLLRRAGRMAEAIQVLKNAErSSPRAALEPGFRYCQGLLARYQNQPRAALRHLNM 1118
                  35666667777777777777777744677778888888888888888888888776654 PP

  == domain 8  score: 0.5 bits;  conditional E-value: 0.36
      TPR_15  161 qtdaAlrdyreAlalapdsselraallWlliDlgrraeLrellkawkaraesdasLwgp...laaAlllLgrpkkALeylrkqake 243 
                  ++++A++++++ l+  p s+       ++l+ +++r+++ ++++ + +    ++++ ++   l  A+l+L++  kA ++l++ ak 
  KOO20920.1 1156 EPNEAVKAAERLLREMPSSARREVLECYMLLATKERNQIDRAVAMLLELLGVEKDYLPAlvcLSQAYLMLKQAPKARNHLKRVAKI 1241
                  56777777777777777755444444577777777777777777777766444444444111456788888888887777776654 PP

>> TPR_21  Tetratricopeptide repeat-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.0   0.0      0.19   1.5e+02      49     108 ..      82     141 ..      36     155 .. 0.81
   2 ?   -0.4   0.2         1   7.9e+02      91     139 ..     178     225 ..     170     279 .. 0.72
   3 ?   -0.8   0.2       1.3     1e+03      36      67 ..     430     461 ..     357     473 .. 0.73
   4 !    6.4   6.2    0.0085       6.6      78     179 ..     525     627 ..     494     636 .. 0.78
   5 !   18.5   6.3   1.6e-06    0.0013      44     179 ..     671     805 ..     660     815 .. 0.83
   6 ?    4.3   0.4     0.038        30     104     138 ..     831     865 ..     813     874 .. 0.73
   7 ?   -0.1  16.8      0.83   6.4e+02      50     166 ..     924    1042 ..     900    1054 .. 0.56
   8 ?    1.5   0.3      0.27   2.1e+02      77     146 ..    1023    1089 ..    1019    1139 .. 0.71
   9 ?    2.2   0.5      0.17   1.3e+02      55     148 ..    1157    1247 ..    1141    1274 .. 0.78

  Alignments for each domain:
  == domain 1  score: 2.0 bits;  conditional E-value: 0.19
      TPR_21  49 aveakdaakakeaaeeladeyggtaYaalaaLllAkaaveagdlaaAkaqLewvlekakd 108
                 a +  d+++++++ +el+ + ++t+  ++a + +A+     g++ +Ak++ + +l  +k+
  KOO20920.1  82 ACKVVDTETLTRLETELMGSTEDTSVPDRARMTAAQLLWHFGETFDAKQHVQHILRMQKS 141
                 444678899999999**********************************99998877665 PP

  == domain 2  score: -0.4 bits;  conditional E-value: 1
      TPR_21  91 dlaaAkaqLewvlekakdeelkal.arlRLarvllaekkydeAlktLeak 139
                 +++aA++ +e++++ +  +  k+l a + +a++   ++++  Al +L+++
  KOO20920.1 178 EFEAAESFFEQAIQAGGGA--KDLdAMMGIAKLASMQGNHRGALDKLSEV 225
                 6777777777777777444..44436778899999999999999988765 PP

  == domain 3  score: -0.8 bits;  conditional E-value: 1.3
      TPR_21  36 aeeAsalYqqlqeaveakdaakakeaaeelad 67 
                 a  As  Y+ +++av + d+a+++++a++ + 
  KOO20920.1 430 ALVASRRYKDVDTAVGHLDRASTQQLAKARKL 461
                 44567777777777777777766666665555 PP

  == domain 4  score: 6.4 bits;  conditional E-value: 0.0085
      TPR_21  78 aaLllAkaaveagdlaaAkaqLewvlekakdeelkalarlRLarvllaekkydeAlktLeakkeeafaal....vaelrGDilvaqgkldeAraaYqaA 172
                 ++++lA+a + + d++aA    +++++   d ++++ a l  a++ll+ +k+ +A + L+++ +++fa++    ++ ++  il  qg+++eA +  ++A
  KOO20920.1 525 SQMQLARAHYLRADYEAALRCCSSIAKA--DPTFADAALL-HAQILLKLDKTRQAGAVLDSALSHNFAVReqplFQLIKAQILHLQGEFAEAETMLSRA 620
                 6899999999999999887777666544..4555665544.59************************98622226778********************* PP

      TPR_21 173 laaleek 179
                 +aa++  
  KOO20920.1 621 IAAQGGA 627
                 9998765 PP

  == domain 5  score: 18.5 bits;  conditional E-value: 1.6e-06
      TPR_21  44 qqlqea.veakdaakakeaaeeladeyggtaYaalaaLllAkaaveagdlaaAkaqLewvlekakdeelkalarlRLarvllaekkydeAlktLeakke 141
                  ql++a +++++  +a+ a+++ + e++gt+   + +++ Ak++v +gd+++A + L+++ ++++     + ar  La ++l++ + ++A ++ +++ +
  KOO20920.1 671 MQLVDAlLAQQKVSEAQSAMAAAVVEFDGTPVEGRLQIANAKVQVVKGDIESALQLLRAIPSESA---HYHAARKALADLYLEHRNDKRAYAACHEEVA 766
                 45555404556666899999999******************************999998877774...45899********************966655 PP

      TPR_21 142 ea.faalvaelrGDilvaqgkldeAraaYqaAlaaleek 179
                 +a  +++   + G++++a  + ++A aa++ Al++  ++
  KOO20920.1 767 AAnPTVASYMMLGEAYMAVLEPEKAIAAFETALRKSPND 805
                 541566777789*********************998776 PP

  == domain 6  score: 4.3 bits;  conditional E-value: 0.038
      TPR_21 104 ekakdeelkalarlRLarvllaekkydeAlktLea 138
                 + a+ +  k+  r  La+++l+ k yd+A+++L++
  KOO20920.1 831 DAAAADPSKTPLRYELAALYLNLKRYDAAMTELKQ 865
                 334444455778999****************9986 PP

  == domain 7  score: -0.1 bits;  conditional E-value: 0.83
      TPR_21   50 veakdaakakeaaeeladeyggtaYaalaaLllAkaaveagdlaaAkaqLewvlekakdee..lkalarlRLarvllaekkyd.eAlktLeakkeea 143 
                   ++++ a+++++++   +   ++a aa  a+ l     +  d++aA  +++ +l++++d+e  + alarl Lar  +++ + +   l tL+a++++ 
  KOO20920.1  924 NQQNALAQLRAETGGADQLATQQAVAASVAMELGALHEQLHDTDAALDAYKTALKHNEDDEkvMLALARLHLARGEVDAAQQQcSSLMTLNAAPPAD 1020
                  122222233333334444444555566666777777777889999999999***9999986223445555555544433222213466677777777 PP

      TPR_21  144 faalvaelrGDilvaqgkldeAr 166 
                   +a++  l  Di++++ + d A 
  KOO20920.1 1021 LDAARI-LIADIMIQKSEWDAAI 1042
                  776654.4446666666666665 PP

  == domain 8  score: 1.5 bits;  conditional E-value: 0.27
      TPR_21   77 laaLllAkaaveagdlaaAkaqLewvlekakdeelkalarlRLarvllaekkydeAlktLeakkeeafaa 146 
                   a +l A+ ++++ +++aA  ++e++l k++   + a+a+  + ++l  ++ ++eA++ L+++++++ +a
  KOO20920.1 1023 AARILIADIMIQKSEWDAAIYHFEQLLLKQPAL-FGAIAK--MLSLLRRAGRMAEAIQVLKNAERSSPRA 1089
                  577888999999999999999999999888655.888875..5789999999999999998776655443 PP

  == domain 9  score: 2.2 bits;  conditional E-value: 0.17
      TPR_21   55 aakakeaaeeladeyggtaYaalaaLllAkaaveagdlaaAkaqLewvlekakdeelkalarlRLarvllaekkydeAlktLeakkeeafaalv 148 
                   ++a +aae+l  e +++a  ++ +     a  e++++++A a L ++l  +kd  l al+ l   + +l  k++ +A + L+++ + af+a+ 
  KOO20920.1 1157 PNEAVKAAERLLREMPSSARREVLECYMLLATKERNQIDRAVAMLLELLGVEKDY-LPALVCLS--QAYLMLKQAPKARNHLKRVAKIAFQAEL 1247
                  3347888999999999998888888777777889999********9999999877.88888765..5555567889999999999999999975 PP

>> TPR_12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.0       7.2   5.6e+03      51      76 ..     115     140 ..     110     141 .. 0.70
   2 !    8.2   0.2    0.0037       2.9      18      72 ..     178     226 ..     176     230 .. 0.82
   3 !   12.1   2.0   0.00024      0.19       8      69 ..     238     301 ..     233     309 .. 0.75
   4 ?   -1.2   0.3       3.4   2.6e+03      20      55 ..     291     325 ..     278     343 .. 0.76
   5 ?    6.3   0.8     0.015        12      26      66 ..     505     544 ..     497     545 .. 0.81
   6 !    7.5   0.6    0.0064         5      10      33 ..     601     624 ..     597     634 .. 0.79
   7 ?   -2.3   0.0       7.4   5.8e+03      28      60 ..     722     753 ..     719     757 .. 0.66
   8 ?    4.7   0.2     0.047        36      28      73 ..     756     800 ..     751     804 .. 0.72
   9 !    7.3   0.3    0.0071       5.5       7      75 ..     776     836 ..     770     838 .. 0.75
  10 ?    6.8   2.4      0.01       8.2       7      54 ..     810     856 ..     805     870 .. 0.77
  11 ?    6.7   7.3     0.011       8.9      17      75 ..     916     980 ..     913     982 .. 0.78
  12 ?    5.7   0.7     0.024        19       6      72 ..     987    1049 ..     982    1049 .. 0.85
  13 ?    2.3   0.9      0.26     2e+02      12      71 ..    1065    1119 ..    1058    1121 .. 0.58
  14 ?    5.1   0.1     0.036        28      45      74 ..    1212    1241 ..    1193    1249 .. 0.68
  15 ?    4.1   0.3     0.073        57       9      71 ..    1258    1312 ..    1250    1323 .. 0.63
  16 ?    1.5   0.2      0.48   3.8e+02       3      29 ..    1286    1312 ..    1284    1343 .. 0.73
  17 ?    1.0   0.0      0.66   5.1e+02       8      33 ..    1326    1351 ..    1317    1357 .. 0.82

  Alignments for each domain:
  == domain 1  score: -2.3 bits;  conditional E-value: 7.2
      TPR_12  51 LgrlyralgryeeAlelleealaiae 76 
                  ++l++ +g++ +A ++ ++ l++ +
  KOO20920.1 115 AAQLLWHFGETFDAKQHVQHILRMQK 140
                 57777777777788888887777765 PP

  == domain 2  score: 8.2 bits;  conditional E-value: 0.0037
      TPR_12  18 rydeAlellekaleiarrllGpdhpltattlrnLgrlyralgryeeAlelleeal 72 
                 +++ A++++e+a+++     G +    + ++ +++ l +++g+++ Al+ l e++
  KOO20920.1 178 EFEAAESFFEQAIQAG---GGAK---DLDAMMGIAKLASMQGNHRGALDKLSEVI 226
                 6899999999997777...4444...789*******************9887776 PP

  == domain 3  score: 12.1 bits;  conditional E-value: 0.00024
      TPR_12   8 nlaavlrrlgrydeAlellekaleiarrllGpdh.pltattlrnLgrly.ralgryeeAlelle 69 
                 + a+vl+ lg++++A e  +++l++  +  G    ++t+ +lr  +    ++  + ++A ++l+
  KOO20920.1 238 EKALVLLNLGDWEQAVETAQRVLAQSDNQGGRGAgAGTLDALRVCALHAiSQETDARAAASRLT 301
                 589***********************87755555588888888888776444455555555555 PP

  == domain 4  score: -1.2 bits;  conditional E-value: 3.4
      TPR_12  20 deAlellekaleiarrllGpdh.pltattlrnLgrly 55 
                 ++A++   +  e+ ++l  + h pl a+ +++ +r +
  KOO20920.1 291 TDARAAASRLTELSQAL--DRHePLNARLYIDVARPF 325
                 68899999999999988..555599999999988755 PP

  == domain 5  score: 6.3 bits;  conditional E-value: 0.015
      TPR_12  26 lekaleiarrllGpdhpltattlrnLgrlyralgryeeAle 66 
                 l ka ++  ++  +++p+++ ++  L+r+++++ +ye+Al+
  KOO20920.1 505 LGKATRVLHEV-AKHSPGLLDSQMQLARAHYLRADYEAALR 544
                 55666666666.3678***********************96 PP

  == domain 6  score: 7.5 bits;  conditional E-value: 0.0064
      TPR_12  10 aavlrrlgrydeAlellekaleia 33 
                 a++l+ +g+++eA+++l +a++++
  KOO20920.1 601 AQILHLQGEFAEAETMLSRAIAAQ 624
                 778888888888888888887765 PP

  == domain 7  score: -2.3 bits;  conditional E-value: 7.4
      TPR_12  28 kaleiarrllGpdhpltattlrnLgrlyralgr 60 
                  al++ r+++  +++ + +++ +L++ly++  +
  KOO20920.1 722 SALQLLRAIPS-ESAHYHAARKALADLYLEHRN 753
                 57777777754.355566788999999987644 PP

  == domain 8  score: 4.7 bits;  conditional E-value: 0.047
      TPR_12  28 kaleia.rrllGpdhpltattlrnLgrlyralgryeeAlelleeala 73 
                 +a++++ +++       t++++  Lg++y a  ++e+A++++e al+
  KOO20920.1 756 RAYAAChEEV--AAANPTVASYMMLGEAYMAVLEPEKAIAAFETALR 800
                 6667774555..33446788888888888777888888888888886 PP

  == domain 9  score: 7.3 bits;  conditional E-value: 0.0071
      TPR_12   7 nnlaavlrrlgrydeAlellekaleiarrllGpdhpltattlrnLgrlyralgryeeAlelleealaia 75 
                   l++++++  + ++A++ +e+al+       p+ p        +g ++  +  y++A+e++ +a a++
  KOO20920.1 776 MMLGEAYMAVLEPEKAIAAFETALRKS-----PNDP---VLASRIGHVLVSTHAYAKAIEYYSDAAAAD 836
                 458888888888888888888885444.....6654...468899999999999999999999888765 PP

  == domain 10  score: 6.8 bits;  conditional E-value: 0.01
      TPR_12   7 nnlaavlrrlgrydeAlellekaleia.rrllGpdhpltattlrnLgrl 54 
                 +++++vl     y++A+e++  a ++  +++  p ++++a+ + nL r+
  KOO20920.1 810 SRIGHVLVSTHAYAKAIEYYSDAAAADpSKT--PLRYELAALYLNLKRY 856
                 57999999***************99997777..7777777777777554 PP

  == domain 11  score: 6.7 bits;  conditional E-value: 0.011
      TPR_12  17 grydeAlellekaleiarrl.lGpdhplt.....attlrnLgrlyralgryeeAlelleealaia 75 
                 + +++A+++ + al++ r+   G d ++t     a++   Lg l+++l ++++Al++++ al+  
  KOO20920.1 916 EALHQAQSNQQNALAQLRAEtGGADQLATqqavaASVAMELGALHEQLHDTDAALDAYKTALKHN 980
                 5577888888888888855537777666544444999999*********************9865 PP

  == domain 12  score: 5.7 bits;  conditional E-value: 0.024
      TPR_12    6 lnnlaavlrrlgrydeAlellekaleiarrllGpdhpltattlrnLgrlyralgryeeAlelleeal 72  
                  +  la +++++g+ d A++ +   + +  +++ p   ++ ++++ ++++  +  ++++A++++e+ l
  KOO20920.1  987 MLALARLHLARGEVDAAQQQCSSLMTLN-AAP-PA--DLDAARILIADIMIQKSEWDAAIYHFEQLL 1049
                  448999********************99.453.44..47889999*****9999*********9965 PP

  == domain 13  score: 2.3 bits;  conditional E-value: 0.26
      TPR_12   12 vlrrlgrydeAlellekaleiarrllGpdhpltattlrnLgrlyralgryeeAlelleea 71  
                  +lrr+gr++eA++ l+ a +       p  +l+   ++  g l r+++++++Al++l+ a
  KOO20920.1 1065 LLRRAGRMAEAIQVLKNAERSS-----PRAALEPGFRYCQGLLARYQNQPRAALRHLNMA 1119
                  5677777777777776662222.....444444444444566666667777777777666 PP

  == domain 14  score: 5.1 bits;  conditional E-value: 0.036
      TPR_12   45 attlrnLgrlyralgryeeAlelleealai 74  
                  + +l  L+++y++l++  +A+++l+++ +i
  KOO20920.1 1212 LPALVCLSQAYLMLKQAPKARNHLKRVAKI 1241
                  555555777788888888888888777665 PP

  == domain 15  score: 4.1 bits;  conditional E-value: 0.073
      TPR_12    9 laavlrrlgrydeAlellekaleiarrllGpdhpltattlrnLgrlyralgryeeAlelleea 71  
                  la+v+   g+yd A+el+ ++l+  ++         a +   Lg + ++   y++A +++e+a
  KOO20920.1 1258 LADVYIVGGKYDLAEELCWRCLASNKS--------CAKAWEFLGVVKEKEAAYKDAASHYEKA 1312
                  888888889999999999888776632........4444445555554444555555555544 PP

  == domain 16  score: 1.5 bits;  conditional E-value: 0.48
      TPR_12    3 atalnnlaavlrrlgrydeAlelleka 29  
                  a+a+  l++v  +   y +A +++eka
  KOO20920.1 1286 AKAWEFLGVVKEKEAAYKDAASHYEKA 1312
                  566666777777777788888887777 PP

  == domain 17  score: 1.0 bits;  conditional E-value: 0.66
      TPR_12    8 nlaavlrrlgrydeAlellekaleia 33  
                  +l   ++++++y eA++ ++k+l ++
  KOO20920.1 1326 KLSFNYLKAKKYVEAIDVCHKVLGQY 1351
                  7888999*************999766 PP

>> FAT  FAT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.0       3.3   2.6e+03     170     217 ..      91     138 ..      88     166 .. 0.68
   2 ?   -2.4   0.0       2.8   2.2e+03     144     175 ..     196     227 ..     175     254 .. 0.84
   3 ?   -1.7   0.1       1.6   1.3e+03     188     216 ..     705     733 ..     661     802 .. 0.66
   4 ?    9.0   1.6   0.00091      0.71     194     296 ..     895     994 ..     845    1017 .. 0.72
   5 ?    8.3   0.1    0.0015       1.1     149     210 ..    1058    1116 ..    1033    1171 .. 0.75

  Alignments for each domain:
  == domain 1  score: -2.7 bits;  conditional E-value: 3.3
                 CCCCCHCTT......TT.TSSCCCHHHHHHHCCHHHHHSSCCHHHHCCT CS
         FAT 170 Lkelleedpeewlp.rappevvyaylKylwssgeqkealqkLreftsel 217
                 L++l++e   + ++ + p++  ++ +++lw+ ge  +a q++++ +  +
  KOO20920.1  91 LTRLETELMGSTEDtSVPDRARMTAAQLLWHFGETFDAKQHVQHILR-M 138
                 55554444423333134568888999999999998888888877665.3 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 2.8
                 S-STTCCCCCCCCHCHHHHCCSTTHHCCCCCH CS
         FAT 144 gvkaemwlkfanlarksgrlslAekaLkelle 175
                 + ++++ + +a+la  +g+ + A + L+e+++
  KOO20920.1 196 AKDLDAMMGIAKLASMQGNHRGALDKLSEVIG 227
                 56788999999999999999999999998865 PP

  == domain 3  score: -1.7 bits;  conditional E-value: 1.6
                 SSCCCHHHHHHHCCHHHHHSSCCHHHHCC CS
         FAT 188 evvyaylKylwssgeqkealqkLreftse 216
                 ++++a++K++  +g++++alq Lr   se
  KOO20920.1 705 RLQIANAKVQVVKGDIESALQLLRAIPSE 733
                 77889999999999999999988543333 PP

  == domain 4  score: 9.0 bits;  conditional E-value: 0.00091
                 HHHHHHCCHHHHHSSCCHHHHCCTSSCCCSS-SS---.................HHHHCCCTCCCCCCCCCCCT.S...-SSCCHHHHCCHHCTCCCHS CS
         FAT 194 lKylwssgeqkealqkLreftsellekkeelqsgleaq.....keptnleeftkllarcylkkGewqealqkldwseekieeilqsysaateidpswyk 287
                  K l  + ++++al+ L e ++ l + +++ q++  aq       +++l+++++  a +  ++G   e+l++        +++l++y++a +++ + +k
  KOO20920.1 895 TKALQLQAKVHKALNALPEALEALHQAQSNQQNA-LAQlraetGGADQLATQQAVAASVAMELGALHEQLHD-------TDAALDAYKTALKHNEDDEK 985
                 4444445567888888888888555555433333.333466688999*************************.......89*************99999 PP

                 TTCCCCHHH CS
         FAT 288 awhtwalfn 296
                    ++a+++
  KOO20920.1 986 VMLALARLH 994
                 888877665 PP

  == domain 5  score: 8.3 bits;  conditional E-value: 0.0015
                  CCCCCCCCHCHHHHCCSTTHHCCCCCHCTT.....TT.TSSCCCHHHHHHHCCH..HHHHSSCC CS
         FAT  149 mwlkfanlarksgrlslAekaLkelleedpeewlprappevvyaylKylwssge..qkealqkL 210 
                  +  k+ +l r++gr+  A+++Lk++++++p     ra  e  + y++ l+++ +   + al +L
  KOO20920.1 1058 AIAKMLSLLRRAGRMAEAIQVLKNAERSSP-----RAALEPGFRYCQGLLARYQnqPRAALRHL 1116
                  5669*********************99998.....44444556666666665553345555555 PP

>> TPR_20  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.2   0.1     0.004       3.1      19      50 ..     196     227 ..     184     262 .. 0.83
   2 ?   -1.3   0.2       3.8   2.9e+03      13      45 ..     345     377 ..     337     386 .. 0.85
   3 ?    7.9   0.2    0.0051       3.9      10      58 ..     511     559 ..     506     570 .. 0.87
   4 ?   -0.6   0.1       2.3   1.8e+03       6      46 ..     650     691 ..     646     699 .. 0.74
   5 ?    4.8   0.6     0.046        36      21      67 ..     703     747 ..     685     750 .. 0.82
   6 ?    1.5   0.1      0.49   3.8e+02       5      53 ..     755     803 ..     751     811 .. 0.80
   7 ?    2.7   0.0       0.2   1.6e+02       6      43 ..     790     827 ..     785     829 .. 0.93
   8 ?   14.8   0.8   3.5e-05     0.028       6      50 ..     824     868 ..     819     877 .. 0.90
   9 ?   -2.2   3.1       6.9   5.4e+03      27      78 ..     893     943 ..     888     947 .. 0.71
  10 ?    7.7   3.9    0.0056       4.3       6      65 ..     968    1029 ..     964    1040 .. 0.80
  11 ?    1.2   0.1      0.61   4.7e+02      11      49 ..    1010    1049 ..    1004    1055 .. 0.78
  12 ?   -2.2   0.1       7.1   5.6e+03      35      55 ..    1191    1211 ..    1186    1240 .. 0.72
  13 ?   -1.1   0.0       3.2   2.5e+03      27      54 ..    1257    1284 ..    1254    1301 .. 0.89
  14 ?   -2.0   0.0       6.1   4.8e+03      22      48 ..    1321    1347 ..    1298    1356 .. 0.79

  Alignments for each domain:
  == domain 1  score: 8.2 bits;  conditional E-value: 0.004
      TPR_20  19 pddldarldlAlallaagryeeAleqLleilk 50 
                  +dlda++  A++  ++g+++ Al++L e++ 
  KOO20920.1 196 AKDLDAMMGIAKLASMQGNHRGALDKLSEVIG 227
                 68*************************99985 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 3.8
      TPR_20  13 aalaanpddldarldlAlallaagryeeAleqL 45 
                 +a+  +pd  + + + A +l+  ++++ A++ L
  KOO20920.1 345 TACRIAPDKAEYAAENAYQLMLLEDHQGAMQVL 377
                 667778999999*****************9877 PP

  == domain 3  score: 7.9 bits;  conditional E-value: 0.0051
      TPR_20  10 eleaalaanpddldarldlAlallaagryeeAleqLleilkrdrkwedd 58 
                  l + ++ +p  ld +++lA+a + + +ye+Al    +i k+d +++d 
  KOO20920.1 511 VLHEVAKHSPGLLDSQMQLARAHYLRADYEAALRCCSSIAKADPTFADA 559
                 567778899999**********************999999999988765 PP

  == domain 4  score: -0.6 bits;  conditional E-value: 2.3
      TPR_20   6 pelaeleaalaanpddl.darldlAlallaagryeeAleqLl 46 
                 p++++l ++l+ n +d   ++++l +alla++++ eA +++ 
  KOO20920.1 650 PPPTTLPEELKLNLSDKcSLHMQLVDALLAQQKVSEAQSAMA 691
                 55666666666555554488999***********99987765 PP

  == domain 5  score: 4.8 bits;  conditional E-value: 0.046
      TPR_20  21 dldarldlAlallaagryeeAleqLleilkrdrkweddaarkqllki 67 
                 +  ++++ A++++ +g+ e Al++L +i ++  ++   aark+l ++
  KOO20920.1 703 EGRLQIANAKVQVVKGDIESALQLLRAIPSESAHY--HAARKALADL 747
                 55678888999999********9999999988888..8999999876 PP

  == domain 6  score: 1.5 bits;  conditional E-value: 0.49
      TPR_20   5 apelaeleaalaanpddldarldlAlallaagryeeAleqLleilkrdr 53 
                 +   a+  +++aa+   ++  + l +a++a  + e+A++++ + l++  
  KOO20920.1 755 KRAYAACHEEVAAANPTVASYMMLGEAYMAVLEPEKAIAAFETALRKSP 803
                 556667777777777778999999*************999988888765 PP

  == domain 7  score: 2.7 bits;  conditional E-value: 0.2
      TPR_20   6 pelaeleaalaanpddldarldlAlallaagryeeAle 43 
                 + +a++e+al ++p+d  ++     +l++   y++A+e
  KOO20920.1 790 KAIAAFETALRKSPNDPVLASRIGHVLVSTHAYAKAIE 827
                 6799*******************************997 PP

  == domain 8  score: 14.8 bits;  conditional E-value: 3.5e-05
      TPR_20   6 pelaeleaalaanpddldarldlAlallaagryeeAleqLleilk 50 
                 + ++   +a+aa+p+   +r++lA ++l  +ry++A+++L ++++
  KOO20920.1 824 KAIEYYSDAAAADPSKTPLRYELAALYLNLKRYDAAMTELKQLIA 868
                 667778899*******************************88875 PP

  == domain 9  score: -2.2 bits;  conditional E-value: 6.9
      TPR_20  27 dlAlallaagryeeAleqLleilkrdrkweddaarkqllkifealgsqdplv 78 
                  + +al  + ++ +Al++L e l++ +++ +   +++l ++ +  g +d+l+
  KOO20920.1 893 LVTKALQLQAKVHKALNALPEALEALHQA-QSNQQNALAQLRAETGGADQLA 943
                 56677788889999999999999987777.4455667777777777777666 PP

  == domain 10  score: 7.7 bits;  conditional E-value: 0.0056
      TPR_20    6 pelaeleaalaanpddldarldlAlallaagryeeAleqLleilkrdrkw..eddaarkqll 65  
                  + l++ ++al+ n dd + +l+lA++ la+g++++A +q  +++  + +   + daar  + 
  KOO20920.1  968 AALDAYKTALKHNEDDEKVMLALARLHLARGEVDAAQQQCSSLMTLNAAPpaDLDAARILIA 1029
                  6789999*****************************99987666555443336666666655 PP

  == domain 11  score: 1.2 bits;  conditional E-value: 0.61
      TPR_20   11 leaalaanpddl.darldlAlallaagryeeAleqLleil 49  
                  l +  aa p+dl +ar+  A+  +++++ ++A+ ++ ++l
  KOO20920.1 1010 LMTLNAAPPADLdAARILIADIMIQKSEWDAAIYHFEQLL 1049
                  5566688999994578999*************98876665 PP

  == domain 12  score: -2.2 bits;  conditional E-value: 7.1
      TPR_20   35 agryeeAleqLleilkrdrkw 55  
                  +++ + A++ Lle+l  ++++
  KOO20920.1 1191 RNQIDRAVAMLLELLGVEKDY 1211
                  567788888888888777766 PP

  == domain 13  score: -1.1 bits;  conditional E-value: 3.2
      TPR_20   27 dlAlallaagryeeAleqLleilkrdrk 54  
                   lA++++ +g+y+ A e+ ++ l+++++
  KOO20920.1 1257 MLADVYIVGGKYDLAEELCWRCLASNKS 1284
                  69*************9999999988876 PP

  == domain 14  score: -2.0 bits;  conditional E-value: 6.1
      TPR_20   22 ldarldlAlallaagryeeAleqLlei 48  
                   +  ++l+  +l+a++y eA++   ++
  KOO20920.1 1321 AAVGYKLSFNYLKAKKYVEAIDVCHKV 1347
                  5667999999999***99999866655 PP

>> Fis1_TPR_C  Fis1 C-terminal tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.4   6.5e-05     0.051       6      45 ..     528     567 ..     526     573 .. 0.91
   2 ?   -0.8   1.3       2.2   1.7e+03       5      28 ..     844     867 ..     842     869 .. 0.85
   3 ?    2.8   0.2      0.16   1.2e+02       9      27 ..    1323    1341 ..    1321    1354 .. 0.65

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 6.5e-05
                 HHHHHHHHHT-HHHHHHHHHHHHHHTTS-HHHHHHHHHHH CS
  Fis1_TPR_C   6 ylAlGhyklgeYseArryvdalLeiEPenrQaqsLkelie 45 
                 +lA +hy   +Y+ A+r++  + + +P +  a+ L++ i 
  KOO20920.1 528 QLARAHYLRADYEAALRCCSSIAKADPTFADAALLHAQIL 567
                 6999*******************************99885 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 2.2
                 HHHHHHHHHHT-HHHHHHHHHHHH CS
  Fis1_TPR_C   5 YylAlGhyklgeYseArryvdalL 28 
                 Y lA  ++ l++Y+ A+  +++l+
  KOO20920.1 844 YELAALYLNLKRYDAAMTELKQLI 867
                 677888999********9999986 PP

  == domain 3  score: 2.8 bits;  conditional E-value: 0.16
                  HHHHHHT-HHHHHHHHHHH CS
  Fis1_TPR_C    9 lGhyklgeYseArryvdal 27  
                  +G+    +Y +A++yv+a+
  KOO20920.1 1323 VGYKLSFNYLKAKKYVEAI 1341
                  5555556677777776653 PP

>> TPR_4  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.6   0.1       1.7   1.3e+03       2      17 ..     110     125 ..     110     133 .. 0.81
   2 ?    9.7   0.5    0.0019       1.5       3      26 .]     235     258 ..     233     258 .. 0.89
   3 ?    2.6   0.9      0.37   2.9e+02       5      22 ..     527     544 ..     524     546 .. 0.88
   4 ?    0.1   0.5       2.3   1.8e+03       3      25 ..     559     581 ..     557     582 .. 0.90
   5 ?   12.9   0.0   0.00018      0.14       3      24 ..     596     617 ..     594     619 .. 0.87
   6 ?    2.7   0.0      0.35   2.7e+02       2      26 .]     705     729 ..     704     729 .. 0.88
   7 ?   -1.2   0.0       6.3   4.9e+03       4      24 ..     843     863 ..     841     865 .. 0.84
   8 ?   11.6   2.1   0.00046      0.36       4      22 ..     987    1005 ..     986    1007 .. 0.91
   9 ?   -1.4   0.1       7.4   5.7e+03       4      24 ..    1096    1116 ..    1093    1117 .. 0.74
  10 ?    1.8   0.0      0.67   5.2e+02       4      23 ..    1255    1274 ..    1253    1275 .. 0.89

  Alignments for each domain:
  == domain 1  score: 0.6 bits;  conditional E-value: 1.7
       TPR_4   2 rallaLArallalGdl 17 
                 ra+   A++l++ G+ 
  KOO20920.1 110 RARMTAAQLLWHFGET 125
                 78999*******9987 PP

  == domain 2  score: 9.7 bits;  conditional E-value: 0.0019
       TPR_4   3 allaLArallalGdldeAraller 26 
                 al+  A +ll lGd+++A ++++r
  KOO20920.1 235 ALAEKALVLLNLGDWEQAVETAQR 258
                 677789**************9986 PP

  == domain 3  score: 2.6 bits;  conditional E-value: 0.37
       TPR_4   5 laLArallalGdldeAra 22 
                   LAra++++ d+++A++
  KOO20920.1 527 MQLARAHYLRADYEAALR 544
                 679*************98 PP

  == domain 4  score: 0.1 bits;  conditional E-value: 2.3
       TPR_4   3 allaLArallalGdldeAralle 25 
                 a+l+ A+ ll l    +A a+l+
  KOO20920.1 559 AALLHAQILLKLDKTRQAGAVLD 581
                 88999*************99997 PP

  == domain 5  score: 12.9 bits;  conditional E-value: 0.00018
       TPR_4   3 allaLArallalGdldeArall 24 
                 ++l  A+ l+++G+++eA+++l
  KOO20920.1 596 FQLIKAQILHLQGEFAEAETML 617
                 67788***************98 PP

  == domain 6  score: 2.7 bits;  conditional E-value: 0.35
       TPR_4   2 rallaLArallalGdldeAraller 26 
                 r+++a A ++   Gd + A++ll++
  KOO20920.1 705 RLQIANAKVQVVKGDIESALQLLRA 729
                 6788889999999**********95 PP

  == domain 7  score: -1.2 bits;  conditional E-value: 6.3
       TPR_4   4 llaLArallalGdldeArall 24 
                 ++ LA ++l l ++d+A + l
  KOO20920.1 843 RYELAALYLNLKRYDAAMTEL 863
                 7899*****999999997765 PP

  == domain 8  score: 11.6 bits;  conditional E-value: 0.00046
       TPR_4    4 llaLArallalGdldeAra 22  
                   laLAr++la+G+ d+A++
  KOO20920.1  987 MLALARLHLARGEVDAAQQ 1005
                  689**************97 PP

  == domain 9  score: -1.4 bits;  conditional E-value: 7.4
       TPR_4    4 llaLArallalGdldeArall 24  
                  ++ ++ ++  + ++ +A+++l
  KOO20920.1 1096 RYCQGLLARYQNQPRAALRHL 1116
                  566666666688999999998 PP

  == domain 10  score: 1.8 bits;  conditional E-value: 0.67
       TPR_4    4 llaLArallalGdldeAral 23  
                   l+LA ++   G +d A++l
  KOO20920.1 1255 WLMLADVYIVGGKYDLAEEL 1274
                  689**************987 PP

>> ChAPs  ChAPs (Chs5p-Arf1p-binding proteins)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.3   0.0      0.54   4.2e+02     189     245 ..     543     612 ..     512     628 .. 0.71
   2 ?    3.9   0.1     0.028        22     237     306 ..     669     742 ..     653     753 .. 0.69
   3 ?   10.7   0.1   0.00024      0.19     193     291 ..     763     863 ..     748     869 .. 0.90
   4 ?   -3.2   0.2       3.9   3.1e+03     221     288 ..     971    1042 ..     961    1047 .. 0.55
   5 ?    1.2   0.1      0.18   1.4e+02     215     285 ..    1192    1269 ..    1155    1275 .. 0.61

  Alignments for each domain:
  == domain 1  score: -0.3 bits;  conditional E-value: 0.54
                 HHHHHHHHTT-...GGGHHHHHHHHHHTT-HHHHHHHHHHHH-SSS-H..........HHHHHHHHHHHH CS
       ChAPs 189 lellekLkeee...pevvillarvllladeEvdavkllneeleeeekd..........aelLllqaefll 245
                 l+  + +++++    +++ l a++ll  d+  +a  +l ++l+++             a++L+lq ef  
  KOO20920.1 543 LRCCSSIAKADptfADAALLHAQILLKLDKTRQAGAVLDSALSHNFAVreqplfqlikAQILHLQGEFAE 612
                 4444444444411157888889999999999999999999996665444566777888888888888864 PP

  == domain 2  score: 3.9 bits;  conditional E-value: 0.028
                 HHHH.HHHHHHSS--...HHHHHHHHHHHHH-TT-HHHHHHHHHHHHHTT-HHHHHHHHHT----SS------- CS
       ChAPs 237 Lllq.aefllskkke...elAlevakravksaPsefktWalLvkvYikledienALltLNscPmftykekdvlr 306
                 L++q ++ ll ++k    + A+++a    + +P e +  +  +kv +  +die+AL  L ++P  + + + + +
  KOO20920.1 669 LHMQlVDALLAQQKVseaQSAMAAAVVEFDGTPVEGRLQIANAKVQVVKGDIESALQLLRAIPSESAHYHAARK 742
                 33332555665555522344444555555779*******************************99887776655 PP

  == domain 3  score: 10.7 bits;  conditional E-value: 0.00024
                 HHHHTT-GGGHH..HHHHHHHHTT-HHHHHHHHHHHH-SSS-HHHHHHHHHHHHHHSS--HHHHHHHHHHHHH-TT-HHHHHHHHHHHHHTT-HHHHHH CS
       ChAPs 193 ekLkeeepevvi..llarvllladeEvdavkllneeleeeekdaelLllqaefllskkkeelAlevakravksaPsefktWalLvkvYikledienALl 289
                 e++++++p v++  +l + ++++ e  +a+   +++l+++++d  l +   + l+s + +  A+e  + a  + Ps+    ++L+  Y++l+ ++ A++
  KOO20920.1 763 EEVAAANPTVASymMLGEAYMAVLEPEKAIAAFETALRKSPNDPVLASRIGHVLVSTHAYAKAIEYYSDAAAADPSKTPLRYELAALYLNLKRYDAAMT 861
                 567778888875337889999999999**********************************************************************99 PP

                 HH CS
       ChAPs 290 tL 291
                  L
  KOO20920.1 862 EL 863
                 88 PP

  == domain 4  score: -3.2 bits;  conditional E-value: 3.9
                  HHHHHHH-SSS-HHHHHHHHHHHHHHSS--HHHHH.HHH.HHHHH-TT.-HH.HHHHHHHHHHHTT-HHHHH CS
       ChAPs  221 kllneeleeeekdaelLllqaefllskkkeelAle.vak.ravksaPs.efk.tWalLvkvYikledienAL 288 
                  +  +++l+++e+d +++l+ a   l + + + A++ +++  + ++aP  +     +l++++ i+  +++ A+
  KOO20920.1  971 DAYKTALKHNEDDEKVMLALARLHLARGEVDAAQQqCSSlMTLNAAPPaDLDaARILIADIMIQKSEWDAAI 1042
                  445566777777766666666666666666555541332135555553133313344566777777776665 PP

  == domain 5  score: 1.2 bits;  conditional E-value: 0.18
                  -HHH.HHHHHHHHH-SSS-H..HHHHHHHHHHHHHSS--...HHHHHHHHHHHHH-.TT-HH.HHHHHHHHHHHTT-HH CS
       ChAPs  215 eEvd.avkllneeleeeekd..aelLllqaefllskkke...elAlevakravksa.Psefk.tWalLvkvYikledie 285 
                  + +d av +l e l   ekd   +l++l   +l+ k+     +  ++vak a ++    +f+  W +L++vYi  + ++
  KOO20920.1 1192 NQIDrAVAMLLELL-GVEKDylPALVCLSQAYLMLKQAPkarNHLKRVAKIAFQAElIDDFErGWLMLADVYIVGGKYD 1269
                  33432555555555.5556645689999999999988875665667788888877624677526********9876665 PP

>> Alkyl_sulf_dimr  Alkyl sulfatase dimerisation
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.1       4.1   3.2e+03      72     115 ..     236     278 ..     233     307 .. 0.66
   2 ?    9.2   0.2     0.002       1.5      72     124 ..     526     578 ..     494     592 .. 0.86
   3 ?    5.2   0.5     0.035        27      73     118 ..     708     753 ..     680     765 .. 0.83
   4 ?   -2.1   0.1       6.3   4.9e+03      82     120 ..     819     857 ..     810     867 .. 0.83
   5 ?    3.8   0.2     0.092        72      68     115 ..     983    1034 ..     909    1042 .. 0.82

  Alignments for each domain:
  == domain 1  score: -1.5 bits;  conditional E-value: 4.1
                      HHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHH CS
  Alkyl_sulf_dimr  72 vlekakealkegdyrwaaellnhlvfadpenaeakelkadaleq 115
                      ++eka   l+ gd + a+e ++ ++++ ++n+  + + a +l++
       KOO20920.1 236 LAEKALVLLNLGDWEQAVETAQRVLAQ-SDNQGGRGAGAGTLDA 278
                      566777777889999999999988765.4444444443333333 PP

  == domain 2  score: 9.2 bits;  conditional E-value: 0.002
                      HHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHHHHH-SSHH CS
  Alkyl_sulf_dimr  72 vlekakealkegdyrwaaellnhlvfadpenaeakelkadaleqlgyqaesat 124
                       ++ a++++ + dy++a+  ++ +  adp+ a+a  l a++l +l +  ++++
       KOO20920.1 526 QMQLARAHYLRADYEAALRCCSSIAKADPTFADAALLHAQILLKLDKTRQAGA 578
                      57889999**********************************99988777665 PP

  == domain 3  score: 5.2 bits;  conditional E-value: 0.035
                      HHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHHHH CS
  Alkyl_sulf_dimr  73 lekakealkegdyrwaaellnhlvfadpenaeakelkadaleqlgy 118
                      +++ak ++ +gd++ a++ll  +  +  + ++a++++ad + +  +
       KOO20920.1 708 IANAKVQVVKGDIESALQLLRAIPSESAHYHAARKALADLYLEHRN 753
                      467888999*******************************987665 PP

  == domain 4  score: -2.1 bits;  conditional E-value: 6.3
                      TT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHHHHH- CS
  Alkyl_sulf_dimr  82 egdyrwaaellnhlvfadpenaeakelkadaleqlgyqa 120
                         y  a+e  + + +adp+++  +  +a+ + +l +  
       KOO20920.1 819 THAYAKAIEYYSDAAAADPSKTPLRYELAALYLNLKRYD 857
                      5668889999999999*****999999999999987755 PP

  == domain 5  score: 3.8 bits;  conditional E-value: 0.092
                       SHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT...-.HHHHHHHHHHHHH CS
  Alkyl_sulf_dimr   68 gaekvlekakealkegdyrwaaellnhlvfadpe...n.aeakelkadaleq 115 
                       +++ +l+ a+ +l++g++ +a+++++ l++ +     + ++a+ l ad++ q
       KOO20920.1  983 DEKVMLALARLHLARGEVDAAQQQCSSLMTLNAAppaDlDAARILIADIMIQ 1034
                       677889999*******************996443222225777777777765 PP

>> YfiO  Outer membrane lipoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.8   0.0     0.051        40      37      66 ..     518     547 ..     497     562 .. 0.79
   2 ?   -1.3   0.5         2   1.5e+03      44      74 ..     774     804 ..     734     840 .. 0.76
   3 ?   -1.8   0.0       2.7   2.1e+03      48      65 ..    1028    1045 ..     980    1087 .. 0.59
   4 ?   -3.4   0.0       8.6   6.7e+03      59      77 ..    1158    1176 ..    1154    1201 .. 0.62
   5 ?    9.7   0.1    0.0008      0.62     139     178 ..    1319    1358 ..    1306    1368 .. 0.86

  Alignments for each domain:
  == domain 1  score: 3.8 bits;  conditional E-value: 0.051
                 TSTTHHHHHHHHHHHHHHTT-HHHHHHHHH CS
        YfiO  37 fspyaeqaqldliyAyykdadyaealasae 66 
                  sp   ++q++l+ A y +ady++al    
  KOO20920.1 518 HSPGLLDSQMQLARAHYLRADYEAALRCCS 547
                 4677789******************97665 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 2
                 HHHHHHHHHHHTT-HHHHHHHHHHHHHH-SS CS
        YfiO  44 aqldliyAyykdadyaealasaerFlrlyPt 74 
                 + ++l  Ay+   + ++a+a+ e+ lr+ P+
  KOO20920.1 774 SYMMLGEAYMAVLEPEKAIAAFETALRKSPN 804
                 3456666666666666666666666666665 PP

  == domain 3  score: -1.8 bits;  conditional E-value: 2.7
                  HHHHHHHTT-HHHHHHHH CS
        YfiO   48 liyAyykdadyaealasa 65  
                  +++ + ++++  +a+   
  KOO20920.1 1028 IADIMIQKSEWDAAIYHF 1045
                  333333333333333333 PP

  == domain 4  score: -3.4 bits;  conditional E-value: 8.6
                  HHHHHHHHHHHHH-SSSTT CS
        YfiO   59 aealasaerFlrlyPthkn 77  
                   ea+++aer lr  P++  
  KOO20920.1 1158 NEAVKAAERLLREMPSSAR 1176
                  5566666666666665543 PP

  == domain 5  score: 9.7 bits;  conditional E-value: 0.0008
                  HHHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHSTTSHHHH CS
        YfiO  139 rLArhElevaefylkreayvaainRvkevlknypdtesve 178 
                  + A++ ++ +  ylk+++yv ai  +++vl +ypd++  +
  KOO20920.1 1319 ASAAVGYKLSFNYLKAKKYVEAIDVCHKVLGQYPDYPRIK 1358
                  557777888888************************9874 PP

>> DUF3379  Protein of unknown function (DUF3379)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.0       4.8   3.7e+03      56      88 ..     662     695 ..     650     701 .. 0.68
   2 ?    8.2   6.2    0.0018       1.4      34     126 ..     893     991 ..     884    1018 .. 0.79

  Alignments for each domain:
  == domain 1  score: -3.0 bits;  conditional E-value: 4.8
     DUF3379  56 dLaeklllkqsleeka.arkrktrvalAlaASva 88 
                 +L +k  l+ +l     a+++ ++ + A+aA+v+
  KOO20920.1 662 NLSDKCSLHMQLVDALlAQQKVSEAQSAMAAAVV 695
                 4555555554443333578888888999999975 PP

  == domain 2  score: 8.2 bits;  conditional E-value: 0.0018
     DUF3379  34 fvkdlkaldkklkqalkvdvPedLaeklllkqsleeka........arkrktrvalAlaASvafvvglslallelenvlaslaeaalaHvvheekkale 124
                 +v ++ +l +k+++al+ + Pe L+  l   qs +++a            +   + A+aASva+ +g +  +l+ + ++ +  ++al+H  ++ek +l+
  KOO20920.1 893 LVTKALQLQAKVHKALN-ALPEALEA-LHQAQSNQQNAlaqlraetGGADQLATQQAVAASVAMELGALHEQLHDTDAALDAYKTALKHNEDDEKVMLA 989
                 67888999999999998.57888864.555555555558878776655566677889********************************9999887776 PP

     DUF3379 125 ld 126
                 l+
  KOO20920.1 990 LA 991
                 65 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1371 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       730  (0.0407162); expected 358.6 (0.02)
Passed bias filter:                      403  (0.0224776); expected 358.6 (0.02)
Passed Vit filter:                        62  (0.00345808); expected 17.9 (0.001)
Passed Fwd filter:                        26  (0.00145016); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              23  [number of targets reported over threshold]
# CPU time: 1.00u 0.25s 00:00:01.25 Elapsed: 00:00:00.54
# Mc/sec: 7652.97
//
Query:       KOO20921.1  [L=223]
Description: hypothetical protein Ctob_003671 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    7.2e-05   22.9   0.0        0.1   12.8   0.0    2.7  2  PPR_2     PPR repeat family


Domain annotation for each model (and alignments):
>> PPR_2  PPR repeat family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.7   0.0   1.2e-05      0.22       4      48 ..      38      85 ..      37      87 .. 0.88
   2 !   12.8   0.0   5.6e-06       0.1       1      46 [.      73     116 ..      73     117 .. 0.88

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 1.2e-05
       PPR_2  4 vtyNtlIsglckkgkveeAfklfneMkk..rgl.ePnsyTysilikgl 48
                v +N  I + ++ ++   A++l+++M++   g  +P + Ty+++++ l
  KOO20921.1 38 VLWNLAIEARLRLRDKTGALRLLQDMRDgmDGApPPGTDTYNSMLTVL 85
                789************************95436689*********9765 PP

  == domain 2  score: 12.8 bits;  conditional E-value: 5.6e-06
       PPR_2   1 pdvvtyNtlIsglckkgkveeAfklfneMkkrglePnsyTysilik 46 
                 p + tyN++++ l ++g++  A+ +++ M   g +P++ T +il+k
  KOO20921.1  73 PGTDTYNSMLTVLGERGEP-FAW-VLHAMAADGMQPDEWTLCILLK 116
                 66789**********9995.566.5689****************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (223 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       240  (0.0133861); expected 358.6 (0.02)
Passed bias filter:                      181  (0.0100954); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.25s 00:00:00.65 Elapsed: 00:00:00.42
# Mc/sec: 1590.29
//
Query:       KOO20922.1  [L=318]
Description: hypothetical protein Ctob_003672, partial [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (318 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       506  (0.0282224); expected 358.6 (0.02)
Passed bias filter:                      265  (0.0147805); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.47u 0.21s 00:00:00.68 Elapsed: 00:00:00.39
# Mc/sec: 2444.91
//
Query:       KOO20923.1  [L=336]
Description: hypothetical protein Ctob_003673 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.7e-05   24.2   4.3    3.2e-05   23.3   4.3    1.4  1  TF_Zn_Ribbon  TFIIB zinc-binding
  ------ inclusion threshold ------
      0.024   14.7   0.0      0.068   13.3   0.0    1.8  1  ASL_C         Adenylosuccinate lyase C-terminal
      0.029   13.7   0.1      0.042   13.2   0.1    1.2  1  YPEB          YpeB sporulation
      0.043   14.1   1.2      0.099   12.9   1.2    1.5  1  SVWC          Single domain von Willebrand factor type C
      0.078   12.6   0.0        0.2   11.3   0.0    1.7  1  HTH_24        Winged helix-turn-helix DNA-binding
      0.087   13.3   0.2       0.43   11.1   0.0    2.2  3  HTH_40        Helix-turn-helix domain
       0.13   12.4   0.0       0.38   10.9   0.0    1.8  1  HTH_AraC      Bacterial regulatory helix-turn-helix proteins,
       0.14   12.0   0.0       0.33   10.8   0.0    1.6  1  TetR_N        Bacterial regulatory proteins, tetR family
        0.2   11.5   1.7       0.69    9.8   0.2    2.6  3  HTH_IclR      IclR helix-turn-helix domain


Domain annotation for each model (and alignments):
>> TF_Zn_Ribbon  TFIIB zinc-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.3   4.3   1.6e-08   3.2e-05       5      39 ..      41      75 ..      36      79 .. 0.89

  Alignments for each domain:
  == domain 1  score: 23.3 bits;  conditional E-value: 1.6e-08
                  TTTCEECHEETSTTCEEESSSSBEEEECCCCCCCH CS
  TF_Zn_Ribbon  5 nCgstnlveDpergelvCtdCGlVlednsidegpe 39
                  +Cg+t++++D+ +g+ vC +CG+V   + +++  e
    KOO20923.1 41 ECGGTEFENDYRSGDRVCRSCGAVQNARNCESQEE 75
                  7***********************98888887766 PP

>> ASL_C  Adenylosuccinate lyase C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.0   3.4e-05     0.068      54     101 ..     188     236 ..     178     247 .. 0.82

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 3.4e-05
                 GGHHH.HHHHHHHTT-TTHHHHHHHHHTTS---HHHHHHHHHCS-S-HH CS
       ASL_C  54 vlaEa.iqtvlrregiekpYeklkeltrgkkitkeslkefieslevsee 101
                 v+a a ++ ++r++gi++ +e+lk++ +g ++++++  + i+ l++ ++
  KOO20923.1 188 VIAAAlLKEAMRKNGIDRLFEELKKVLKGDDVDAADTGKTISALALLRA 236
                 5555525789****************************99999987554 PP

>> YPEB  YpeB sporulation
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.1   2.1e-05     0.042      98     155 ..     107     164 ..     104     213 .. 0.89

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 2.1e-05
        YPEB  98 fsyslakkdldgepLteeeyktLeeLyeqakelekeLrkvqekvaegglrwgelekal 155
                  +++la+ ++dg++Lt +++k++++++++ + l++ L+ + +   +g++  ++l ++ 
  KOO20923.1 107 QANQLAHGQADGDELTHKQRKKIADYKDKVTVLSDALELTDTIKFDGHMLCEDLVRKQ 164
                 6899*********************************999888888888777766664 PP

>> SVWC  Single domain von Willebrand factor type C
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   1.2     5e-05     0.099      13      54 ..      29      77 ..      23      82 .. 0.84

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 5e-05
        SVWC 13 esikppepCeritCse........dgsltietCgvvalppkCklgekdkt 54
                 ++++++ C++++C+         +g  +  +Cg+v+++ +C+ +e+ ++
  KOO20923.1 29 SDLNRKSMCRNWECGGtefendyrSGDRVCRSCGAVQNARNCESQEE-EH 77
                5678889********999*9988888888**************9984.44 PP

>> HTH_24  Winged helix-turn-helix DNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   9.9e-05       0.2      16      39 ..     258     281 ..     258     282 .. 0.95

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 9.9e-05
      HTH_24  16 prisqreLAerlglSpstvnrrlk 39 
                 p++s +++A++ gl+  t++++++
  KOO20923.1 258 PKLSVADIAQEAGLTEKTLTQHMR 281
                 789*******************98 PP

>> HTH_40  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.0       4.1   8.1e+03      49      64 ..     121     136 ..     108     151 .. 0.64
   2 ?   -2.7   0.0       4.2   8.4e+03      57      76 ..     194     214 ..     189     222 .. 0.61
   3 ?   11.1   0.0   0.00022      0.43      12      33 ..     259     280 ..     257     294 .. 0.94

  Alignments for each domain:
  == domain 1  score: -2.6 bits;  conditional E-value: 4.1
      HTH_40  49 vseeeekeIeeaiekv 64 
                 ++++++k+I+++ +kv
  KOO20923.1 121 LTHKQRKKIADYKDKV 136
                 3667777787776665 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 4.2
      HTH_40  57 Ieeaiekvgsek.lkpikeal 76 
                 ++ea++k g ++ + ++k+ l
  KOO20923.1 194 LKEAMRKNGIDRlFEELKKVL 214
                 566777766444445555444 PP

  == domain 3  score: 11.1 bits;  conditional E-value: 0.00022
      HTH_40  12 glsieeIAkerglkesTIegHL 33 
                 +ls+++IA+e gl+e+T  +H+
  KOO20923.1 259 KLSVADIAQEAGLTEKTLTQHM 280
                 589******************7 PP

>> HTH_AraC  Bacterial regulatory helix-turn-helix proteins, AraC family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   0.00019      0.38       8      31 ..     259     282 ..     257     283 .. 0.91

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00019
                 T--HHHHHHHTTSSHHHHHHHHHH CS
    HTH_AraC   8 nltiediAdelgfSrsyFsrlFkk 31 
                 +l+++diA+e+g+ + ++++ ++ 
  KOO20923.1 259 KLSVADIAQEAGLTEKTLTQHMRH 282
                 69****************999885 PP

>> TetR_N  Bacterial regulatory proteins, tetR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   0.00016      0.33      16      36 ..     259     279 ..     257     280 .. 0.91

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00016
                 T--HHHHHHHHTSSHHHHHHH CS
      TetR_N  16 attvreIAkrAGvskgalYry 36 
                 +++v++IA++AG+++ +l ++
  KOO20923.1 259 KLSVADIAQEAGLTEKTLTQH 279
                 589**************9877 PP

>> HTH_IclR  IclR helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   0.2   0.00035      0.69       5      31 ..     230     272 ..     230     282 .. 0.96
   2 ?   -0.5   0.0      0.56   1.1e+03      20      37 ..     291     308 ..     274     309 .. 0.80
   3 ?   -2.9   0.0       3.1   6.3e+03       3      11 ..     316     324 ..     315     331 .. 0.70

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.00035
                 HHHHHCT-CTTBSS................-BHHHHHHHHTS- CS
    HTH_IclR   5 alaiLdalaeapqe................ltlselArrtglp 31 
                 ala+L+a++e  q+                l+++++A+++gl+
  KOO20923.1 230 ALALLRAFEELVQPklrngkqnrplpqlpkLSVADIAQEAGLT 272
                 89***************************************97 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 0.56
                 BHHHHHHHHTS-HHHHHH CS
    HTH_IclR  20 tlselArrtglpkStvhR 37 
                  l++lA+r++ p++ ++R
  KOO20923.1 291 LLQDLAHRLAPPPPFAFR 308
                 589999999988887776 PP

  == domain 3  score: -2.9 bits;  conditional E-value: 3.1
                 HHHHHHHCT CS
    HTH_IclR   3 dRalaiLda 11 
                 dR l+ Lda
  KOO20923.1 316 DRILQALDA 324
                 677776664 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (336 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1301  (0.072564); expected 358.6 (0.02)
Passed bias filter:                      788  (0.0439511); expected 358.6 (0.02)
Passed Vit filter:                        72  (0.00401584); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.52u 0.29s 00:00:00.81 Elapsed: 00:00:00.44
# Mc/sec: 2304.65
//
Query:       KOO20924.1  [L=426]
Description: nod3 protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    7.9e-13   47.4  13.8    7.4e-07   28.7   0.3    5.8  6  LRR_6     Leucine Rich repeat
    0.00096   19.2   0.0     0.0052   16.9   0.0    2.2  2  Skp1      Skp1 family, dimerisation domain
     0.0015   18.9   0.9       0.97    9.9   0.1    3.1  3  LRR_4     Leucine Rich repeats (2 copies)
  ------ inclusion threshold ------
      0.026   15.0   0.1         59    4.8   0.0    4.1  4  LRR_1     Leucine Rich Repeat
      0.098   12.4   1.5        7.1    6.5   0.0    3.0  2  LRR_8     Leucine rich repeat


Domain annotation for each model (and alignments):
>> LRR_6  Leucine Rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.7   0.3   2.1e-10   7.4e-07       2      23 ..     254     275 ..     253     276 .. 0.95
   2 !    8.7   0.0   0.00053       1.9       2      24 .]     282     304 ..     281     304 .. 0.93
   3 !    5.2   0.1    0.0073        26       5      21 ..     329     345 ..     328     346 .. 0.89
   4 !    5.6   0.4    0.0054        19       4      24 .]     371     391 ..     369     391 .. 0.91
   5 ?    4.6   0.1     0.011        40       2      12 ..     397     407 ..     396     408 .. 0.87
   6 ?   -3.5   0.0       4.4   1.6e+04      12      16 ..     412     416 ..     411     418 .. 0.80

  Alignments for each domain:
  == domain 1  score: 28.7 bits;  conditional E-value: 2.1e-10
       LRR_6   2 nthLteLdLsgNdIgDeGaeaL 23 
                 n++Lt+LdL++N Ig eGa+aL
  KOO20924.1 254 NSSLTSLDLTCNRIGSEGASAL 275
                 9********************9 PP

  == domain 2  score: 8.7 bits;  conditional E-value: 0.00053
       LRR_6   2 nthLteLdLsgNdIgDeGaeaLa 24 
                 n++L  +d++gN I ++Ga  L+
  KOO20924.1 282 NRSLLRVDVRGNIIAGDGAAQLS 304
                 9******************9885 PP

  == domain 3  score: 5.2 bits;  conditional E-value: 0.0073
       LRR_6   5 LteLdLsgNdIgDeGae 21 
                  teL+++g +IgDeG++
  KOO20924.1 329 FTELNINGKGIGDEGIM 345
                 6999****9******86 PP

  == domain 4  score: 5.6 bits;  conditional E-value: 0.0054
       LRR_6   4 hLteLdLsgNdIgDeGaeaLa 24 
                 +Lt+L+L++N +g +G ++L+
  KOO20924.1 371 SLTKLSLASNMLGEDGTKSLC 391
                 7************99999887 PP

  == domain 5  score: 4.6 bits;  conditional E-value: 0.011
       LRR_6   2 nthLteLdLsg 12 
                 + +L+eLdLsg
  KOO20924.1 397 SKTLKELDLSG 407
                 579******97 PP

  == domain 6  score: -3.5 bits;  conditional E-value: 4.4
       LRR_6  12 gNdIg 16 
                 +N+Ig
  KOO20924.1 412 YNNIG 416
                 8***9 PP

>> Skp1  Skp1 family, dimerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   0.0   1.4e-06    0.0052       9      40 ..      33      65 ..      28      72 .. 0.86
   2 ?   -1.8   0.0      0.96   3.4e+03       4      11 ..     260     267 ..     260     274 .. 0.86

  Alignments for each domain:
  == domain 1  score: 16.9 bits;  conditional E-value: 1.4e-06
        Skp1  9 ktvAdmikgktpeeiReiFnIenDft.pEEeee 40
                +++A+++ gk+  eiR++++   Df  +EE ++
  KOO20924.1 33 RAIASRLNGKRALEIRALLGEGSDFGsAEEHAA 65
                689**********************98888776 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 0.96
        Skp1   4 ldltcktv 11 
                 ldltc ++
  KOO20924.1 260 LDLTCNRI 267
                 8****987 PP

>> LRR_4  Leucine Rich repeats (2 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.0   0.0    0.0049        18       2      18 ..     256     272 ..     248     296 .. 0.62
   2 ?   -4.0   0.0         5   1.8e+04      26      32 ..     330     336 ..     328     341 .. 0.60
   3 !    9.9   0.1   0.00027      0.97       2      33 ..     371     408 ..     371     416 .. 0.74

  Alignments for each domain:
  == domain 1  score: 6.0 bits;  conditional E-value: 0.0049
                 S--EEE--SS---E-S- CS
       LRR_4   2 nLevLdLsnNqltdipl 18 
                 +L++LdL  N++ + + 
  KOO20924.1 256 SLTSLDLTCNRIGSEGA 272
                 56666666666666555 PP

  == domain 2  score: -4.0 bits;  conditional E-value: 5
                 -EEE-.- CS
       LRR_4  26 keLdLsg 32 
                 +eL+++g
  KOO20924.1 330 TELNING 336
                 5666644 PP

  == domain 3  score: 9.9 bits;  conditional E-value: 0.00027
                 S--EEE--SS---E-S-.......HHH-TT--EEE-.-S CS
       LRR_4   2 nLevLdLsnNqltdipl.......leklpnLkeLdLsgN 33 
                 +L++L+L++N+l + ++       l+  + LkeLdLsg 
  KOO20924.1 371 SLTKLSLASNMLGE-DGtkslceaLQDSKTLKELDLSGS 408
                 69***********4.345676444345777******984 PP

>> LRR_1  Leucine Rich Repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.8   0.0     0.016        59       1      19 [.     256     274 ..     256     278 .. 0.81
   2 ?   -1.0   0.0       1.4   4.9e+03       2      14 ..     285     297 ..     284     311 .. 0.68
   3 ?   -0.3   0.0      0.77   2.8e+03       1      12 [.     371     382 ..     371     394 .. 0.74
   4 ?    4.0   0.0     0.031   1.1e+02       2      12 ..     400     410 ..     399     416 .. 0.85

  Alignments for each domain:
  == domain 1  score: 4.8 bits;  conditional E-value: 0.016
       LRR_1   1 nLrhLdLsnnpllglppns 19 
                 +L++LdL+ n++++ ++++
  KOO20924.1 256 SLTSLDLTCNRIGSEGASA 274
                 69*********97776665 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 1.4
       LRR_1   2 LrhLdLsnnpllg 14 
                 L + d+++n++ g
  KOO20924.1 285 LLRVDVRGNIIAG 297
                 667899***9843 PP

  == domain 3  score: -0.3 bits;  conditional E-value: 0.77
       LRR_1   1 nLrhLdLsnnpl 12 
                 +L++L L +n l
  KOO20924.1 371 SLTKLSLASNML 382
                 699****99988 PP

  == domain 4  score: 4.0 bits;  conditional E-value: 0.031
       LRR_1   2 LrhLdLsnnpl 12 
                 L++LdLs+ ++
  KOO20924.1 400 LKELDLSGSFP 410
                 9******9886 PP

>> LRR_8  Leucine rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.5   0.0     0.002       7.1       2      15 ..     256     269 ..     254     281 .. 0.80
   2 ?    3.2   0.5     0.021        75      26      57 ..     371     406 ..     364     408 .. 0.46

  Alignments for each domain:
  == domain 1  score: 6.5 bits;  conditional E-value: 0.002
                 T-SEEE-TTS--SE CS
       LRR_8   2 nLtsLdLsnNrlts 15 
                 +LtsLdL++Nr+ s
  KOO20924.1 256 SLTSLDLTCNRIGS 269
                 79999999999865 PP

  == domain 2  score: 3.2 bits;  conditional E-value: 0.021
                 T--EEE--SS---GGGG....GGGTT--S-.EEE-- CS
       LRR_8  26 nLkvLdLsnNllttlsp....gafsgLpsLrsLdLs 57 
                 +L+ L+L +N l         +a+++ + L++LdLs
  KOO20924.1 371 SLTKLSLASNMLGEDGTkslcEALQDSKTLKELDLS 406
                 455555555544322220111344444444555444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (426 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       431  (0.0240393); expected 358.6 (0.02)
Passed bias filter:                      389  (0.0216967); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.50u 0.25s 00:00:00.75 Elapsed: 00:00:00.42
# Mc/sec: 3013.63
//
Query:       KOO20925.1  [L=190]
Description: hypothetical protein Ctob_000440, partial [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (190 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       637  (0.035529); expected 358.6 (0.02)
Passed bias filter:                      430  (0.0239835); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.44u 0.23s 00:00:00.67 Elapsed: 00:00:00.41
# Mc/sec: 1390.09
//
Query:       KOO20926.1  [L=363]
Description: violaxanthin de-epoxidase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.9e-66  224.0   0.1    2.3e-66  223.8   0.1    1.1  1  VDE       VDE lipocalin domain


Domain annotation for each model (and alignments):
>> VDE  VDE lipocalin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  223.8   0.1   1.3e-70   2.3e-66       2     238 .]      73     314 ..      72     314 .. 0.94

  Alignments for each domain:
  == domain 1  score: 223.8 bits;  conditional E-value: 1.3e-70
         VDE   2 lkcllkkckvelkrcladkdClkglvclakCkkdeqaCqikCgdlyenevldefleCaiedkkcvk..qksdegeaevkapsalvkafdlkslegkWyi 98 
                  +c++++ck+++k+c+++++Clkg++cl +C+ +eq C+++C++++++e+l+++l+C++e+k+cv+   k+d++++ ++ap +++ af++++legkWy+
  KOO20926.1  73 PNCFFTDCKEPTKACFTNPACLKGITCLGNCR-GEQLCATQCFARFGSEKLNSWLSCTLEEKECVStgVKQDTSKFYANAP-PVAPAFKPSDLEGKWYK 169
                 68******************************.*********************************886789999988888.999************** PP

         VDE  99 vaGlnpafDvFdCQkhtfsksekkklegdlefrvkrpdgg.fferslveklvqd........tksegklfnhdneyLhyeedwyilgkekdeeeyklvy 188
                 v G+ p++D+++CQ++tf++ +++ le d+ frv++pdg   ++++++e++  +           egk+f+     L+++edwy++g     + y++v+
  KOO20926.1 170 VLGYSPKYDMYPCQTNTFTARADGGLENDILFRVPKPDGSgSWTNNFKETMDNSkgprgtasMVVEGKMFG-----LTFHEDWYVIG---VGKGYRVVA 260
                 *******************99***************97654**********99899999984489999999.....***********...5789***** PP

         VDE 189 YrGktdaqkgYeGavvysrsaelpeeaipeveeaa.....kkagldlskfikidN 238
                 Y+G+t +q+ YeGa+v++++++  + ++++  ++a     ++ gld+s++  idN
  KOO20926.1 261 YKGDT-QQGPYEGAFVFTETKDALQGSASDAMRLAidadiRRGGLDPSQMAPIDN 314
                 *****.9*************99999888887777767777999***********9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (363 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       585  (0.0326287); expected 358.6 (0.02)
Passed bias filter:                      345  (0.0192426); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.26s 00:00:00.71 Elapsed: 00:00:00.40
# Mc/sec: 2717.99
//
Query:       KOO20927.1  [L=538]
Description: septin 5 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    5.5e-61  206.3   0.0    3.7e-52  177.4   0.0    2.1  2  Septin        Septin
    3.1e-05   24.4   5.4    3.1e-05   24.4   5.4    2.0  2  AAA_16        AAA ATPase domain
    3.1e-05   23.6   0.1        1.2    8.7   0.0    3.3  3  GTP_EFTU      Elongation factor Tu GTP binding domain
    0.00055   20.2   0.3     0.0017   18.6   0.1    1.9  2  AAA_22        AAA domain
     0.0018   17.5   0.0     0.0044   16.2   0.0    1.6  1  NB-ARC        NB-ARC domain
     0.0027   17.8   2.9      0.019   15.0   0.8    2.8  2  Dynamin_N     Dynamin family
     0.0038   17.7   0.1     0.0092   16.5   0.1    1.6  1  ABC_tran      ABC transporter
     0.0062   16.5   0.0      0.015   15.2   0.0    1.7  1  NACHT         NACHT domain
     0.0068   16.5   0.0        1.8    8.6   0.0    2.6  2  MMR_HSR1      50S ribosome-binding GTPase
     0.0077   15.3   0.0      0.014   14.4   0.0    1.3  1  T2SSE         Type II/IV secretion system protein
     0.0089   15.9   0.0       0.02   14.8   0.0    1.6  1  MobB          Molybdopterin guanine dinucleotide synthesis pr
  ------ inclusion threshold ------
      0.013   15.5   1.4        5.6    6.8   0.0    3.4  4  RsgA_GTPase   RsgA GTPase
      0.017   15.4   0.0      0.039   14.2   0.0    1.6  1  Roc           Ras of Complex, Roc, domain of DAPkinase
      0.026   14.5   0.1      0.045   13.7   0.1    1.4  1  AAA_5         AAA domain (dynein-related subfamily)
      0.036   13.6   0.0      0.069   12.7   0.0    1.4  1  AAA_7         P-loop containing dynein motor region
      0.042   13.5   0.4       0.22   11.1   0.0    2.4  3  Ras           Ras family
      0.065   12.6   0.4       0.13   11.6   0.0    1.8  2  TniB          Bacterial TniB protein
      0.066   12.7   0.0       0.13   11.7   0.0    1.4  1  Pox_A32       Poxvirus A32 protein
       0.09   12.7   0.3       0.22   11.4   0.1    1.7  2  ATPase_2      ATPase domain predominantly from Archaea
      0.098   12.4   0.0        3.4    7.4   0.0    2.8  3  ATP_bind_1    Conserved hypothetical ATP binding protein
       0.33   10.7   1.9         12    5.6   0.1    3.2  3  PduV-EutP     Ethanolamine utilisation - propanediol utilisat
       0.43   11.1   3.1       0.66   10.5   0.7    2.3  2  DUF16         Protein of unknown function DUF16
        1.9    9.1  11.3        4.4    7.9  11.3    1.6  1  IHABP4_N      Intracellular hyaluronan-binding protein 4 N-te
          3    8.1   9.0        2.2    8.5   6.7    2.0  1  Seryl_tRNA_N  Seryl-tRNA synthetase N-terminal domain
        3.9    7.2  18.6       0.79    9.5  13.8    2.0  2  ERM           Ezrin/radixin/moesin family
        5.2    6.1   9.9        9.4    5.2   9.9    1.3  1  Atg14         Vacuolar sorting 38 and autophagy-related subun
        5.5    7.7   6.4         17    6.1   1.5    3.1  3  SlyX          SlyX


Domain annotation for each model (and alignments):
>> Septin  Septin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.8   0.0   4.4e-09   2.9e-06       4      56 ..     107     158 ..     105     166 .. 0.79
   2 !  177.4   0.0   5.6e-55   3.7e-52      33     269 ..     296     532 ..     288     534 .. 0.87

  Alignments for each domain:
  == domain 1  score: 26.8 bits;  conditional E-value: 4.4e-09
                 EEEEEEEEBTTSSCCCCCCTTSSSS------------------S-EEEEEEEE CS
      Septin   4 eftlmvvGesglGkttlintlfetdlieeekleeasekkkktveikkkkvvie 56 
                 +f+lmvvGe glGkttl++++f++   +e ++    e+k++ +ei++++++ e
  KOO20927.1 107 SFNLMVVGEAGLGKTTLLESFFQSFKDDEASFA-LFERKETAIEIETRRQLAE 158
                 69********************99877776555.5577778888887766554 PP

  == domain 2  score: 177.4 bits;  conditional E-value: 5.6e-55
                 --------------S-E.EEEEEEEETTCEEEEEEEE---BSSSSSHHCCCHHHHHHHHHHHHHHHHHCTS.....S--SS-----EEEEEEEE-TTSS CS
      Septin  33 ekleeasekkkktveik.kkkvvieedgvklnltviDtpgfGdavdnskswepiveyideqfeeylreesk.....lkRkkivDkRvHaclyfisPtgh 125
                 ++ ++++  ++ tv ik     +i   + +l++t++Dtpg+G+++d ++s++++ +yid  fe+ lr+es      ++R +++D  vH+clyfi+P  h
  KOO20927.1 296 RSRRSRRALTSATVCIKaFDPFSITVGKHELQVTLVDTPGYGESLDAQESFDVVEQYIDGLFERQLRAESSwsprdAERLRLQDPLVHVCLYFIAP--H 392
                 555555556667777773345567777889***************************************862222267999**************9..8 PP

                 SS-HHHHHHHHHHTTTS-EEEEESSGGGS-HHHHHHHHHHHHHHHHHTT--------SSSS-SCCHHHHHHHHHHC-SEEB-SSSSEEEESSSEEEEEE CS
      Septin 126 glkpldvelmkklsekvnliPviaKaDtltkeElkefKkkireeleeeeikiyklpdeeededeeakelseklkeslPfaivgsneliekkgkkvrgRk 224
                 +lk++d+++m++l++kvn++P+iaK+Dt+t++E +efK+++re+l++e i+ y  +d+        +e++ k + + P+a++gs++ + + g++v  Rk
  KOO20927.1 393 RLKHMDIAFMRALHKKVNIVPIIAKSDTMTTKEKEEFKQQLRETLQREGIEAYA-FDQGVIRS---MEAQDKCEYQQPWAVIGSTDAFLDAGHQVYLRK 487
                 9*****************************************************.88888884...458889999************************ PP

                 ETTEEEETT-TTT-SCCHHHHHHHHH.CHHHHHHHHHHTHHHHHHH CS
      Septin 225 ypWGvvevenekhsdFlkLrklllkt.hledLkevteellYetyRs 269
                 ypWG     ++ hsd  +Lr+ll+ +   +dLk   ++  Ye +R+
  KOO20927.1 488 YPWGDALSSEPAHSDLPALRNLLMWSgQWHDLKMAARS-KYEIWRA 532
                 **********************9854278999977665.8999986 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.4   5.4   4.6e-08   3.1e-05      26     107 ..     109     202 ..      98     308 .. 0.76
   2 ?   -2.5   0.0       9.1     6e+03     108     122 ..     418     432 ..     345     459 .. 0.55

  Alignments for each domain:
  == domain 1  score: 24.4 bits;  conditional E-value: 4.6e-08
      AAA_16  26 lvllsGesGvGKsslvrellralekdggiflrgkcdqlesaipysalaqalareellrqlldeaesaeleawrekleeala.................. 106
                 +++++Ge+G GK++l++++++++++d++ f+  + ++          +++ +r++l ++ +++ ++ e+e  ++  +++++                  
  KOO20927.1 109 NLMVVGEAGLGKTTLLESFFQSFKDDEASFALFERKET--------AIEIETRRQLAEAGAQRNAA-ERELQAAVEKAQYTrasakqaeieqmgqsmaa 198
                 688***********************999988888888........78888887777777777333.44444444444444333333333333333333 PP

      AAA_16 107 ...a 107
                     
  KOO20927.1 199 lgaK 202
                 3332 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 9.1
      AAA_16 108 vpelagaeasrllel 122
                 ++ ++ +e++ + ++
  KOO20927.1 418 SDTMTTKEKEEFKQQ 432
                 222222222222222 PP

>> GTP_EFTU  Elongation factor Tu GTP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.6   0.0    0.0039       2.6       4      32 ..     108     136 ..     105     191 .. 0.74
   2 ?    3.5   0.0     0.067        45      40      80 ..     290     336 ..     278     339 .. 0.72
   3 !    8.7   0.0    0.0018       1.2     117     154 ..     403     449 ..     396     503 .. 0.78

  Alignments for each domain:
  == domain 1  score: 7.6 bits;  conditional E-value: 0.0039
                 EEEEEEESTTSSHHHHHHHHHHHTTSSCH CS
    GTP_EFTU   4 rnigiighvDhGKtTLtdrLlyktgaisk 32 
                  n++++g    GKtTL+++  ++ ++++ 
  KOO20927.1 108 FNLMVVGEAGLGKTTLLESFFQSFKDDEA 136
                 699****************9988777655 PP

  == domain 2  score: 3.5 bits;  conditional E-value: 0.067
                 HSTHCHSHHHHHHTSCSSCEEEEEE......TTCSSEEEEEEEESSS CS
    GTP_EFTU  40 ervlDtlkeErergiTiksaaisle......ketkkylinliDtPGH 80 
                 + ++ +++   +r +T  +  i+ +        +++ +++l+DtPG 
  KOO20927.1 290 DDTIERRSRRSRRALTSATVCIKAFdpfsitVGKHELQVTLVDTPGY 336
                 4556666777777777777777766777764378999*********5 PP

  == domain 3  score: 8.7 bits;  conditional E-value: 0.0018
                 HHHHTTTEEEEEEESCGST.HHHHHHHHHHHHHHHHHH........H CS
    GTP_EFTU 117 lalkegvpiivfiNKmDrl.kaelkeiveevkqklsrk........e 154
                  al ++v+i+ +i K D +  +e +e +++++++l+r+        +
  KOO20927.1 403 RALHKKVNIVPIIAKSDTMtTKEKEEFKQQLRETLQREgieayafdQ 449
                 578899*************9899999999999999555444444431 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.6   0.1   2.6e-06    0.0017       8     102 ..     110     214 ..     107     249 .. 0.59
   2 ?   -2.2   0.0       7.1   4.7e+03      71      90 ..     422     441 ..     376     449 .. 0.63

  Alignments for each domain:
  == domain 1  score: 18.6 bits;  conditional E-value: 2.6e-06
      AAA_22   8 lvvtGesGtGKTtllrrlleqldeeakaee....erpevvfvtlpsst.sskdllrellralglelka...erlsseell.ealeqalrarav..iell 95 
                 l+v+Ge+G GKTtll+ ++++++ +++       ++ + ++++   +  +    +++  r+l+   ++    r+s ++   e++ q + a ++  +el 
  KOO20927.1 110 LMVVGEAGLGKTTLLESFFQSFKDDEAS-FalfeRKETAIEIETRRQLaEAGAQRNAAERELQAAVEKaqyTRASAKQAEiEQMGQSMAALGAklKELS 207
                 78*******************9643222.2467444444444443333222222333333333333334442333333333555555555555555677 PP

      AAA_22  96 iiDEaqh 102
                   DE q+
  KOO20927.1 208 AADERQR 214
                 7777666 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 7.1
      AAA_22  71 erlsseellealeqalrara 90 
                  ++++ee+ ++l++ l++ +
  KOO20927.1 422 TTKEKEEFKQQLRETLQREG 441
                 34555666666666666555 PP

>> NB-ARC  NB-ARC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.0   6.6e-06    0.0044      13      51 ..     101     138 ..      94     161 .. 0.89

  Alignments for each domain:
  == domain 1  score: 16.2 bits;  conditional E-value: 6.6e-06
                 HCTTTSCSEEEEEEESTTSSHHHHHHHHCCSHCCCCCCB CS
      NB-ARC  13 lekdelqslvvalvGmgGvGKttlakqilnksdevegrF 51 
                   +  ++s+ + +vG +G+GKttl+++ +++++  e  F
  KOO20927.1 101 R-EPAMESFNLMVVGEAGLGKTTLLESFFQSFKDDEASF 138
                 3.77889999*******************9998777666 PP

>> Dynamin_N  Dynamin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.8   2.9e-05     0.019       2     126 ..     111     353 ..     110     356 .. 0.65
   2 ?   -2.2   0.1       5.4   3.6e+03     127     157 ..     406     436 ..     395     444 .. 0.70

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 2.9e-05
                 EEEEBTTTTHHHHHHHHHTS--S-.--SSS---S-EEEEECCT---CCS...SSEEEE.......T-EB--CHHHHHHHHHHHHHHHTSSSS--SS... CS
   Dynamin_N   2 avvGsqSsGKSSvlnaLlgedilp.rgpnptTrrplelqlgeeeeaseravkeelkek.......ekkledfsevreeieketekiagankgiskk... 89 
                 +vvG+   GK+++l++  ++      +  +  r+ + ++ ++  +  e+ ++ +  e+       +++++ +s+ + eie+  +  a  +     k   
  KOO20927.1 111 MVVGEAGLGKTTLLESFFQSFKDDeASFALFERKETAIEIETRRQLAEAGAQRNAAERelqaaveKAQYTRASAKQAEIEQMGQSMAALGA----Klke 205
                 6888888888888888887532222555566666666666444443322222222222222222222333333333333332222222222....0222 PP

                 ................................................................................................... CS
   Dynamin_N  90 ................................................................................................... 89 
                                                                                                                    
  KOO20927.1 206 lsaaderqrnelrslreccrgrrlemkraadqadfvaaaerqleasilqsecdavhiqlkqmrrasdepaggpggadddgadddddtierrsrrsrral 304
                 344555566677777777888888888899999999999999999999999999999999999999999999999999999999999999999999999 PP

                 ...........-EEEEEEETTS-SEEEEE---B-SSSGTTS..HHHHHHH CS
   Dynamin_N  90 ...........villkilsllvkgltlvDlPGldsvnkrdq..elvkeyi 126
                            + ++++ + ++ ++tlvD+PG+ ++ + ++  ++v++yi
  KOO20927.1 305 tsatvcikafdPFSITV-GKHELQVTLVDTPGYGESLDAQEsfDVVEQYI 353
                 99999988876555544.67999**********99776666679***999 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 5.4
                 STTEEEEEEEETTS-CCC-CHHHHHHHHSTT CS
   Dynamin_N 127 kkadiilavtsanhdlsnsealflarevdpk 157
                 +k+  i+ + + +  ++++e++++++++++ 
  KOO20927.1 406 HKKVNIVPIIAKSDTMTTKEKEEFKQQLRET 436
                 5555566666777778888888888888765 PP

>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.1   1.4e-05    0.0092      14     110 ..     110     207 ..     105     234 .. 0.68

  Alignments for each domain:
  == domain 1  score: 16.5 bits;  conditional E-value: 1.4e-05
                 EEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGGB-HHHCCHCEEEE-SS--S-TTSB.HHHH.......HHHTCHHHHHHHSTTGGTTCBGEST CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxx.......xxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  14 vaivGenGaGKStLlkllagllkpteGeilldgkdlkeqeleslrkeigvlpqepqlfpelt.vren.......esdeeiekalsklglkelkdtvvks 104
                 + +vGe G GK+tLl+ + +  k++e +  l +++ + +e+e  r+  +   q +   +el+ + e+       +         +++++ +     ++ 
  KOO20927.1 110 LMVVGEAGLGKTTLLESFFQSFKDDEASFALFERKETAIEIETRRQLAEAGAQRNAAERELQaAVEKaqytrasA-------KQAEIEQMGQSMAALGA 201
                 679*********************999998887777777888888888888888777777764444434444442.......33333333333333333 PP

                 TSGGS- CS
                 xxxxxx RF
    ABC_tran 105 spssLS 110
                 + ++LS
  KOO20927.1 202 KLKELS 207
                 334444 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.0   2.2e-05     0.015       3      28 ..     110     135 ..     109     181 .. 0.83

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 2.2e-05
                 EEEEC-TTTCHHHHHHHHHHHHCTS- CS
       NACHT   3 vilqGeaGsGKTtLlqklalawaegk 28 
                 +++ GeaG GKTtLl+++ +  ++++
  KOO20927.1 110 LMVVGEAGLGKTTLLESFFQSFKDDE 135
                 5799**************99988765 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.3   0.0      0.03        20       2      22 ..     110     130 ..     109     168 .. 0.80
   2 !    8.6   0.0    0.0028       1.8      40      68 ..     320     350 ..     293     439 .. 0.71

  Alignments for each domain:
  == domain 1  score: 5.3 bits;  conditional E-value: 0.03
                 EEEEESTTSSHHHHHHHHHTS CS
    MMR_HSR1   2 vaivGrpNvGKStLinaltge 22 
                  ++vG    GK+tL+ + +++
  KOO20927.1 110 LMVVGEAGLGKTTLLESFFQS 130
                 689************999875 PP

  == domain 2  score: 8.6 bits;  conditional E-value: 0.0028
                 EEEETTEEEEEEECGGCSS...HHHHHHHHHH CS
    MMR_HSR1  40 rvklkgkeielvDtpGlie...gaseekglgk 68 
                 +v +++ +++lvDtpG +    +a+e+ ++ +
  KOO20927.1 320 TVGKHELQVTLVDTPG-YGeslDAQESFDVVE 350
                 44455689********.742222222223222 PP

>> T2SSE  Type II/IV secretion system protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.4   0.0   2.2e-05     0.014     120     194 ..      98     172 ..      91     177 .. 0.79

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 2.2e-05
       T2SSE 120 evlrkavrerglilvsGgTgsGKttllyallkeinksderivtvEDpvEiqleganqvqlnak.kakvtfadllra 194
                 ++lr++  e  +++v G  g GKttll +  + +++++  + + E   E+ +e + + ql ++ ++++ +++ l+a
  KOO20927.1  98 KTLREPAMESFNLMVVGEAGLGKTTLLESFFQSFKDDEASFALFE-RKETAIEIETRRQLAEAgAQRNAAERELQA 172
                 68999999*****************************99999988.456666666666666554445555555555 PP

>> MobB  Molybdopterin guanine dinucleotide synthesis protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.0     3e-05      0.02       2      74 ..     110     178 ..     109     200 .. 0.78

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 3e-05
        MobB   2 lgivgksgsGKTtLleklipelkarglrvgtiKhahhgfdvdkpgkDsyrhrkAGAkevlvaskerlalikel 74 
                 l +vg  g GKTtLle   + +k+ + + ++   ++ ++++++      ++++AGA+  + + + + a+ k +
  KOO20927.1 110 LMVVGEAGLGKTTLLESFFQSFKDDEASFALFERKETAIEIETRR----QLAEAGAQRNAAERELQAAVEKAQ 178
                 689************************************999975....688888888776666666654444 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.8   0.0    0.0085       5.6     101     121 ..     109     129 ..      95     147 .. 0.81
   2 ?   -0.2   0.1       1.3   8.4e+02      61      95 ..     185     219 ..     164     227 .. 0.78
   3 ?   -2.5   0.0       6.3   4.2e+03     153     161 ..     328     336 ..     323     339 .. 0.79
   4 ?    4.6   0.0      0.04        27      36      74 ..     398     435 ..     385     472 .. 0.75

  Alignments for each domain:
  == domain 1  score: 6.8 bits;  conditional E-value: 0.0085
                  EEEEECSTTSSHHHHHHHHCT CS
  RsgA_GTPase 101 tsvlvGqSGvGKStLinallp 121
                    ++vG+ G GK+tL++++ +
   KOO20927.1 109 NLMVVGEAGLGKTTLLESFFQ 129
                  56789***********98765 PP

  == domain 2  score: -0.2 bits;  conditional E-value: 1.3
                  HHHHHHHHHHHHHHTTSEEEE--TTTHTTHHHHHH CS
  RsgA_GTPase  61 eeeeleelkeelealgyevllvsaktkegleelke 95 
                  ++ e+e++ + ++alg ++  +sa ++++ +el++
   KOO20927.1 185 KQAEIEQMGQSMAALGAKLKELSAADERQRNELRS 219
                  23369999999999999999999999988888775 PP

  == domain 3  score: -2.5 bits;  conditional E-value: 6.3
                  EEEESS-SS CS
  RsgA_GTPase 153 glliDtPGf 161
                   +l+DtPG 
   KOO20927.1 328 VTLVDTPGY 336
                  579*****6 PP

  == domain 4  score: 4.6 bits;  conditional E-value: 0.04
                  HHHHHHHHHTT-EEEEEEE-GGG--HHHHHHHHHHHHHH CS
  RsgA_GTPase  36 drfLvlaeekgiepvivlnKiDlleeeeeleelkeelea 74 
                  d + + a +k++++v ++ K D ++++e  ee+k++l++
   KOO20927.1 398 DIAFMRALHKKVNIVPIIAKSDTMTTKE-KEEFKQQLRE 435
                  55667888999*************9999.5555555543 PP

>> Roc  Ras of Complex, Roc, domain of DAPkinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   0.0   5.9e-05     0.039       2      31 ..     110     138 ..     109     163 .. 0.75

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 5.9e-05
                 EEEESSTTSSHHHHHHCHCT-CCC-EEETT CS
         Roc   2 vvlvGdsgvGKtsllkrfvedkfsekekst 31 
                 +++vG++g GKt+ll++f + +f+++e s 
  KOO20927.1 110 LMVVGEAGLGKTTLLESFFQ-SFKDDEASF 138
                 79****************95.566555554 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.1   6.8e-05     0.045       1      64 [.     109     178 ..     109     247 .. 0.82

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 6.8e-05
                 EEEEE--SSSSHHHHHHHGGGGB.S--EEEEE--TT--HHHHH--B--..............-------- CS
       AAA_5   1 dvlLvGppGtgKselaerlaaal.nreveyvqltrdtteedlkgrreik.....ngttslvdsplvraar 64 
                 ++++vG+ G gK++l e++ + +  +e    ++ r+ t+ ++  rr+++        ++++ +++v++a+
  KOO20927.1 109 NLMVVGEAGLGKTTLLESFFQSFkDDEASFALFERKETAIEIETRRQLAeagaqRNAAERELQAAVEKAQ 178
                 6899*******************999**********************9986655555666666666665 PP

>> AAA_7  P-loop containing dynein motor region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0    0.0001     0.069      32      65 ..     106     139 ..      99     158 .. 0.85

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 0.0001
       AAA_7  32 nkkpvllvGptGtGKtviikdllkkldkekylsl 65 
                 ++ ++++vG++G GKt++++++++++++++ +++
  KOO20927.1 106 ESFNLMVVGEAGLGKTTLLESFFQSFKDDEASFA 139
                 56789********************998877655 PP

>> Ras  Ras family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   0.00033      0.22       2      46 ..     110     153 ..     109     161 .. 0.79
   2 ?   -2.3   0.0       4.5     3e+03     131     147 ..     172     188 ..     152     199 .. 0.70
   3 ?   -1.9   0.0       3.2   2.1e+03      40      58 ..     318     336 ..     305     357 .. 0.69

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00033
                 EEEEESTTSSHHHHHHHHHHSSCSSSCTTTSSEEEEEEEEEETTE CS
         Ras   2 lvlvGdsavGKtslllrfvkdkFkeeyesTigvdfytkeievdgk 46 
                 l++vG+ + GKt+ll +f ++ Fk++  s   ++ +++ ie++ +
  KOO20927.1 110 LMVVGEAGLGKTTLLESFFQS-FKDDEASFALFERKETAIEIETR 153
                 689***************985.66666665558888888887755 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 4.5
                 HHHHTSEEEEEBTTTTC CS
         Ras 131 akelglkfletSAktne 147
                 a   +++++ +SAk++e
  KOO20927.1 172 AAVEKAQYTRASAKQAE 188
                 44455899999999864 PP

  == domain 3  score: -1.9 bits;  conditional E-value: 3.2
                 EEEETTEEEEEEEEEETTS CS
         Ras  40 eievdgkevkleiwDTAGq 58 
                 +i+v ++e+++++ DT G 
  KOO20927.1 318 SITVGKHELQVTLVDTPGY 336
                 6777888888888888873 PP

>> TniB  Bacterial TniB protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0    0.0002      0.13      36      62 ..     108     134 ..      95     203 .. 0.76
   2 ?   -3.5   0.1       8.7   5.8e+03     107     147 ..     394     434 ..     391     439 .. 0.65

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 0.0002
        TniB  36 pnlllvGdsnnGKtmivekFarlhppe 62 
                  nl++vG+   GKt+++e+F ++ +++
  KOO20927.1 108 FNLMVVGEAGLGKTTLLESFFQSFKDD 134
                 599*****************9776554 PP

  == domain 2  score: -3.5 bits;  conditional E-value: 8.7
        TniB 107 leqqvlrllrelkvrvLiiDEihnllagsarkqreflnalk 147
                 l+++ ++++r+l+ +v i+  i +  + + ++++ef ++l+
  KOO20927.1 394 LKHMDIAFMRALHKKVNIVPIIAKSDTMTTKEKEEFKQQLR 434
                 55666667777777777666666666666777777766666 PP

>> Pox_A32  Poxvirus A32 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   0.00019      0.13      12      38 ..     106     132 ..      99     141 .. 0.89

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.00019
     Pox_A32  12 kpFrlalvGgsGsGktvyLlsLlrtlv 38 
                 + F+l +vG++G Gkt+ L s ++++ 
  KOO20927.1 106 ESFNLMVVGEAGLGKTTLLESFFQSFK 132
                 68*********************9875 PP

>> ATPase_2  ATPase domain predominantly from Archaea
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.1   0.00033      0.22      23     113 ..     110     203 ..      93     209 .. 0.68
   2 ?   -2.3   0.0         5   3.3e+03      70      90 ..     419     441 ..     388     465 .. 0.56

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00033
    ATPase_2  23 yfiYGpegsGKtaLlkeiienledkdk.yviyyialreesiskldefieeeeekkklekalgiavpkaeleeilk..eksklvfkaiellleki 113
                 +++ G  g GKt+Ll  + +  +d +    ++  +   ++i++ ++  e   +++ +e+ l+ av+ka+  + +    +++++ +++++l +k+
  KOO20927.1 110 LMVVGEAGLGKTTLLESFFQSFKDDEAsFALFERKETAIEIETRRQLAEAGAQRNAAERELQAAVEKAQYTRASAkqAEIEQMGQSMAALGAKL 203
                 5678******************877662455555555555555555545556666677778888888888666554444555555555555555 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 5
    ATPase_2  70 e..eeeekkklekalgiavpkae 90 
                 +  +++ek++++++l +++++  
  KOO20927.1 419 DtmTTKEKEEFKQQLRETLQREG 441
                 12244444445555544444444 PP

>> ATP_bind_1  Conserved hypothetical ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.4   0.0    0.0052       3.4       1      24 [.     112     135 ..     112     141 .. 0.86
   2 ?    1.1   0.0      0.43   2.8e+02      75     105 ..     310     340 ..     288     354 .. 0.64
   3 ?   -0.9   0.0       1.7   1.1e+03     145     179 ..     397     431 ..     376     456 .. 0.65

  Alignments for each domain:
  == domain 1  score: 7.4 bits;  conditional E-value: 0.0052
  ATP_bind_1   1 vvGpaGsGKttfvgalseilelrg 24 
                 vvG aG GKtt+ +++ + +++ +
  KOO20927.1 112 VVGEAGLGKTTLLESFFQSFKDDE 135
                 89*************999888765 PP

  == domain 2  score: 1.1 bits;  conditional E-value: 0.43
  ATP_bind_1  75 lresldwldeelekeeddyllfDtPGQielf 105
                   + +d ++ +++k+e +  l+DtPG  e  
  KOO20927.1 310 CIKAFDPFSITVGKHELQVTLVDTPGYGESL 340
                 444456666666666779********77655 PP

  == domain 3  score: -0.9 bits;  conditional E-value: 1.7
  ATP_bind_1 145 llsalsamlrlelPhvvvlnkfDllkeklekelef 179
                 + +a    l+ ++  v ++ k D + +k+++e++ 
  KOO20927.1 397 MDIAFMRALHKKVNIVPIIAKSDTMTTKEKEEFKQ 431
                 33344444777888899999999888654444433 PP

>> PduV-EutP  Ethanolamine utilisation - propanediol utilisation
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.6   0.1     0.018        12       3      20 ..     109     126 ..     107     136 .. 0.87
   2 ?    1.7   0.0       0.3     2e+02      90     140 ..     144     195 ..     127     198 .. 0.81
   3 ?    0.7   0.0      0.62   4.1e+02      84     121 ..     401     443 ..     386     455 .. 0.67

  Alignments for each domain:
  == domain 1  score: 5.6 bits;  conditional E-value: 0.018
   PduV-EutP   3 killiGkvgsGKttLtqa 20 
                 +++++G+ g GKttL ++
  KOO20927.1 109 NLMVVGEAGLGKTTLLES 126
                 58*************865 PP

  == domain 2  score: 1.7 bits;  conditional E-value: 0.3
   PduV-EutP  90 ke.viGiitkidlaedeenieaveelLksaGaekifevsavekegieellky 140
                 ke  i i t+ +lae  ++ +a+e++L++a  +  ++  + ++  ie++ + 
  KOO20927.1 144 KEtAIEIETRRQLAEAGAQRNAAERELQAAVEKAQYTRASAKQAEIEQMGQS 195
                 44258899999***9999*********9999999999999999999998665 PP

  == domain 3  score: 0.7 bits;  conditional E-value: 0.62
   PduV-EutP  84 fasvfnk..eviGiitkidlaedeen..i.eaveelLksaGae 121
                 f++ ++k  +++ ii k d+++++e+    ++ +e+L+  G+e
  KOO20927.1 401 FMRALHKkvNIVPIIAKSDTMTTKEKeeFkQQLRETLQREGIE 443
                 6666666224699999999875544311213456667766665 PP

>> DUF16  Protein of unknown function DUF16
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.7   0.00099      0.66      21      82 ..     152     221 ..     127     265 .. 0.78
   2 ?   -0.0   0.1       1.8   1.2e+03      16      37 ..     417     438 ..     403     460 .. 0.75

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00099
                 BHHHHHHB-..BHHHHHHHHHHHH...........HHHHHHHHHHHHHHHHHHHHHHHHHHHHH...... CS
       DUF16  21 TrkqlnefkdsnkqrLkkieakvd........klgeqinkleqkvekqgekikelkveqkaqgeelnkvd 82 
                 Tr+ql e   + ++  ++++a v+        +++ +i+++ q + ++g+k+kel++  + q++el ++ 
  KOO20927.1 152 TRRQLAEAGAQRNAAERELQAAVEkaqytrasAKQAEIEQMGQSMAALGAKLKELSAADERQRNELRSLR 221
                 6777777333333333333333335557887789999***************************998554 PP

  == domain 2  score: -0.0 bits;  conditional E-value: 1.8
                 XTTB-BHHHHHHB-..BHHHHH CS
       DUF16  16 kteYVTrkqlnefkdsnkqrLk 37 
                 k++  T k+ +efk++  + L+
  KOO20927.1 417 KSDTMTTKEKEEFKQQLRETLQ 438
                 5666799999999988666554 PP

>> IHABP4_N  Intracellular hyaluronan-binding protein 4 N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.9  11.3    0.0066       4.4      34     156 ..     170     303 ..     141     308 .. 0.62

  Alignments for each domain:
  == domain 1  score: 7.9 bits;  conditional E-value: 0.0066
    IHABP4_N  34 keekkkkkreekenkgkrkagpkgaksaakaa...............aakagkkesqkerkkpkkegeeqpekprtpgvdrnvkfsaskkekaq.kvlg 116
                  ++   +k++   +++k+             +               ++  +  e q+++ ++ +e   + +  + ++++ ++ f+a  +++ + ++l+
  KOO20927.1 170 LQA-AVEKAQYTRASAKQA------------EieqmgqsmaalgaklKELSAADERQRNELRSLRECC-RGRRLEMKRAADQADFVAAAERQLEaSILQ 254
                 222.222222222222233............1333333333333333333333444433333333333.444455677777778888888888866666 PP

    IHABP4_N 117 ........ekrapRrnedeqq.qqgqnegrgtpvkrdkaerRpfrErrp 156
                         + +  Rr  de+   +g ++  g + + d  erR+ r rr+
  KOO20927.1 255 secdavhiQLKQMRRASDEPAgGPGGADDDGADDDDDTIERRSRRSRRA 303
                 7899999999999*********999999999************999996 PP

>> Seryl_tRNA_N  Seryl-tRNA synthetase N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.5   6.7    0.0033       2.2      40      96 ..     151     209 ..     129     221 .. 0.83

  Alignments for each domain:
  == domain 1  score: 8.5 bits;  conditional E-value: 0.0033
                   HHHHHHHHHHHHHHHHHHHCCCCCCTT..S-TCCCCCCCHHHHHHHHHHHHHHHHHHHH CS
  Seryl_tRNA_N  40 elqveleelqaerNelskeIgkakkkk..edaeeliaevkelkeelkaleaelkeleae 96 
                   e++ +l e+ a+rN++ +e + a +k     a++  ae++++++ ++al a+lkel+a+
    KOO20927.1 151 ETRRQLAEAGAQRNAAERELQAAVEKAqyTRASAKQAEIEQMGQSMAALGAKLKELSAA 209
                   4455677888999999999999998888899**********************999875 PP

>> ERM  Ezrin/radixin/moesin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5  13.8    0.0012      0.79      24     137 ..     136     254 ..     124     310 .. 0.75
   2 ?   -0.3   0.2       1.2     8e+02      68      87 ..     417     436 ..     405     459 .. 0.76

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 0.0012
         ERM  24 aqeaLreseetaelLaekarraeeeaelLeqkaaeaeeeiqrlkesaekeeeekeklerklreaeleaarleeeserkeeeaerLkeeleeareaeeea 122
                 a  aL e +eta + + +++ ae  a++ +++++   +  ++   +a+++++e e++ + +++  +++++l  + er+ +e + L+e  +  r + ++a
  KOO20927.1 136 ASFALFERKETAIEIETRRQLAEAGAQRNAAERELQAAVEKAQYTRASAKQAEIEQMGQSMAALGAKLKELSAADERQRNELRSLRECCRGRRLEMKRA 234
                 666899999********99999999988777665444444444556677888999*******************************9998888888888 PP

         ERM 123 kekllealstpsks.....e 137
                 + +   +++++++      +
  KOO20927.1 235 ADQADFVAAAERQLeasilQ 254
                 76665555555332444431 PP

  == domain 2  score: -0.3 bits;  conditional E-value: 1.2
         ERM  68 esaekeeeekeklerklrea 87 
                 +s  ++ +eke+ +++lre 
  KOO20927.1 417 KSDTMTTKEKEEFKQQLRET 436
                 55566666777666666664 PP

>> Atg14  Vacuolar sorting 38 and autophagy-related subunit 14
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.2   9.9     0.014       9.4      26     138 ..     151     255 ..     147     274 .. 0.76

  Alignments for each domain:
  == domain 1  score: 5.2 bits;  conditional E-value: 0.014
       Atg14  26 elrerlaklksekeslkkkiekalegkeeaeqledkiknkkakleelksliadlrerlqelkdklsqlkkeieekkkklaklsdklkkRrsdleslqne 124
                 e r +la   +++++ ++++++a+e+ +      +++  k+a +e++ + +a l ++l+el++  ++++ e++  ++  ++++ ++k R +d   + + 
  KOO20927.1 151 ETRRQLAEAGAQRNAAERELQAAVEKAQ-----YTRASAKQAEIEQMGQSMAALGAKLKELSAADERQRNELRSLRECCRGRRLEMK-RAAD--QADFV 241
                 7788999999****************99.....889999999999999999999999999999999999999999999999999996.5555..44444 PP

       Atg14 125 leerrkkqiaklqd 138
                  +++r+ + + lq+
  KOO20927.1 242 AAAERQLEASILQS 255
                 44444444444443 PP

>> SlyX  SlyX
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.0       9.3   6.2e+03      25      48 ..     155     178 ..     151     185 .. 0.62
   2 ?    6.1   1.5     0.025        17      28      58 ..     184     214 ..     171     219 .. 0.89
   3 ?    2.6   0.1      0.33   2.2e+02      27      55 ..     244     272 ..     228     283 .. 0.81

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 9.3
                 HHHHHHHHHHHHHHHHHHHHHT-X CS
        SlyX  25 vvaeqqqqidrlqrqlrllaerlk 48 
                 ++ae   q  + +r+l++ +e+ +
  KOO20927.1 155 QLAEAGAQRNAAERELQAAVEKAQ 178
                 455555666666777777776665 PP

  == domain 2  score: 6.1 bits;  conditional E-value: 0.025
                 HHHHHHHHHHHHHHHHHHT-XXXXXXXXXXX CS
        SlyX  28 eqqqqidrlqrqlrllaerlkeleessgase 58 
                 + q +i+++ + +++l  +lkel++++++++
  KOO20927.1 184 AKQAEIEQMGQSMAALGAKLKELSAADERQR 214
                 5799********************9987654 PP

  == domain 3  score: 2.6 bits;  conditional E-value: 0.33
                 HHHHHHHHHHHHHHHHHHHT-XXXXXXXX CS
        SlyX  27 aeqqqqidrlqrqlrllaerlkeleessg 55 
                 ae q + + lq ++++++ +lk+++ +s 
  KOO20927.1 244 AERQLEASILQSECDAVHIQLKQMRRASD 272
                 5667777889***********99998865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (538 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1614  (0.0900218); expected 358.6 (0.02)
Passed bias filter:                      865  (0.0482459); expected 358.6 (0.02)
Passed Vit filter:                       126  (0.00702772); expected 17.9 (0.001)
Passed Fwd filter:                        31  (0.00172904); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              27  [number of targets reported over threshold]
# CPU time: 0.72u 0.32s 00:00:01.04 Elapsed: 00:00:00.43
# Mc/sec: 3725.05
//
Query:       KOO20928.1  [L=352]
Description: regulator of g-protein signaling loco-like protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    9.5e-23   80.7   0.3    9.6e-09   35.5   0.0    3.1  3  RGS       Regulator of G protein signaling domain
  ------ inclusion threshold ------
        9.2    5.9   9.0         12    5.5   0.1    3.4  3  RecR      RecR protein


Domain annotation for each model (and alignments):
>> RGS  Regulator of G protein signaling domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.3   0.0   1.7e-05      0.16      73     111 ..       2      38 ..       1      41 [. 0.94
   2 !   35.5   0.0   1.1e-12   9.6e-09       2     110 ..      62     175 ..      61     179 .. 0.91
   3 !   29.7   0.0   6.9e-11   6.2e-07       4     111 ..     216     321 ..     213     324 .. 0.94

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 1.7e-05
                 HHHHHHHHCSSSTTTTTTHHHHHHHHHHHHHHHHHHHHT CS
         RGS  73 reelekrlekeqpsrklfeeaqeevfellekdsypkFlk 111
                 r+++e rl++  p  ++fee+q e ++++  + +p+F++
  KOO20928.1   2 RTKIEGRLSN--PPVDIFEELQMEMYQVMLLELFPRFCE 38 
                 78999*****..*************************97 PP

  == domain 2  score: 35.5 bits;  conditional E-value: 1.1e-12
                 HHHHHTSHH.HHHHHHHHHHHTTCTHHHHHHHHHHHHHTSSHHHHHHHHHHHHHHHHTSTTSTTSSTS-HHHHHHHHHHHCSSSTTT....TTTHHHHH CS
         RGS   2 leslledqp.grslFreFlesefseenlsFwlaveefkkakeqeelkkkakeIyneylapsspkelnidkklreelekrlekeqpsr....klfeeaqe 95 
                 l++l+e q+  +  F e++++  +++ + F+l+v +++   +  +l+ +ak+I  +yla +s++ + + ++ r++l + le+ +p++    +lf+++ +
  KOO20928.1  62 LKELFEAQDiEVYRFCEYCRTIMCDDLVVFLLEVGDYRLLFSPADLLHQAKKISTRYLAAQSETRIVVRSEERTRLIHALETPNPMEalplDLFDKLYD 160
                 78899999988999********************************************************************97776333378****** PP

                 HHHHHHHHHHHHHHH CS
         RGS  96 evfellekdsypkFl 110
                 evf +l+ + +p + 
  KOO20928.1 161 EVFIMLNLETWPTYK 175
                 ******999999886 PP

  == domain 3  score: 29.7 bits;  conditional E-value: 6.9e-11
                 HHHTSHHHHHHHHHHHHHTTCTHHHHHHHHHHHHHTSSHHHHHHHHHHHHHHHHTSTTSTTSSTS-HHHHHHHHHHHCSSSTTTTTTHHHHHHHHHHHH CS
         RGS   4 slledqpgrslFreFlesefseenlsFwlaveefkkakeqeelkkkakeIyneylapsspkelnidkklreelekrlekeqpsrklfeeaqeevfelle 102
                 ++l +++ +++ r+   ++  +en++F  a++++    + +++k ka+ I+n++lap+++  +n+ +++ + ++ ++ +     ++fe   +e + +l 
  KOO20928.1 216 EVLRSPDKLECMRTAAAKQGVKENVDFCVACQQYSLLFSADDRKPKAEMIWNTHLAPGCDAPVNLADHMIKFMKPKIDE--GETDAFEVGYQEMLLVLC 312
                 6788888888899999999999*********************************************************..9***************** PP

                 HHHHHHHHT CS
         RGS 103 kdsypkFlk 111
                 ++ ++++lk
  KOO20928.1 313 NNTFKQYLK 321
                 *******98 PP

>> RecR  RecR protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.5   0.5      0.05   4.5e+02      17      28 ..      35      46 ..      35      56 .. 0.73
   2 ?    3.0   0.5    0.0082        74      17      26 ..      75      84 ..      71      88 .. 0.79
   3 ?    5.5   0.1    0.0014        12      11      26 ..     235     250 ..     230     251 .. 0.87

  Alignments for each domain:
  == domain 1  score: 0.5 bits;  conditional E-value: 0.05
                EE-TTT--EESS CS
        RecR 17 rhCsrCgnltee 28
                r+C+ C n  e 
  KOO20928.1 35 RFCEACANRGEA 46
                689999986555 PP

  == domain 2  score: 3.0 bits;  conditional E-value: 0.0082
                EE-TTT--EE CS
        RecR 17 rhCsrCgnlt 26
                r+C+ C+++ 
  KOO20928.1 75 RFCEYCRTIM 84
                89*****995 PP

  == domain 3  score: 5.5 bits;  conditional E-value: 0.0014
                 HHHHH-EE-TTT--EE CS
        RecR  11 eakekvrhCsrCgnlt 26 
                  +ke+v +C  C+ ++
  KOO20928.1 235 GVKENVDFCVACQQYS 250
                 69**********9876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (352 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       478  (0.0266607); expected 358.6 (0.02)
Passed bias filter:                      348  (0.0194099); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.45u 0.24s 00:00:00.69 Elapsed: 00:00:00.40
# Mc/sec: 2627.90
//
Query:       KOO20929.1  [L=405]
Description: rmnd5a protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.1e-10   40.7   0.0    1.7e-09   37.7   0.0    2.2  1  CLTH      CTLH/CRA C-terminal to LisH motif domain


Domain annotation for each model (and alignments):
>> CLTH  CTLH/CRA C-terminal to LisH motif domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.7   0.0   9.4e-14   1.7e-09      11     147 ..     151     333 ..     142     334 .. 0.87

  Alignments for each domain:
  == domain 1  score: 37.7 bits;  conditional E-value: 9.4e-14
        CLTH  11 lilegdlseaiewinenkpellesnsnLeFkLkllqfielirgktkd....ieealeyarenl.efend.............................. 74 
                 ++++g ++ + +w +e+ +el+++   Le + + l+f++ +  + +d    ++++  +++++l ++                                 
  KOO20929.1 151 ELEAGGTELVSAWLQEHGHELRDHGAMLELEVLQLRFTQRVL-S-GDtagaLQTLRDFSTRQLlRAG-Asddgsgprpgvwsaprmagtkgvaqtyplt 246
                 567788888999******************************.6.5623335555566666884433.3367889999999999999999999999999 PP

        CLTH  75 ................ehlkelekamsLLafsdpeskelssplknlldp.srrekvakefnsailkllglskespLeillsaglsalktl 147
                                 +  + + k++++La+  ++    ssp++++l+  ++r ++ ++f++++l  l  + +s+Le l+ ag+ al++l
  KOO20929.1 247 gtsfdgarwpvqssqlTAEARMRKLAGALAYAHQPA---SSPYAEMLNEpAQRAQLRDLFTKEYLLRLRRPASSSLETLVDAGTLALPKL 333
                 999999999999999999999************777...99******999*************************************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (405 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       718  (0.0400469); expected 358.6 (0.02)
Passed bias filter:                      583  (0.0325172); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.54u 0.25s 00:00:00.79 Elapsed: 00:00:00.78
# Mc/sec: 1562.67
//
Query:       KOO20930.1  [L=272]
Description: hypothetical protein Ctob_000435 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
        1.5    8.7  32.3      0.095   12.6  11.5    2.4  2  DASH_Spc19  Spc19


Domain annotation for each model (and alignments):
>> DASH_Spc19  Spc19
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.9  12.8     0.011   1.9e+02      70     157 .]      14     107 ..       4     107 .. 0.56
   2 ?   12.6  11.5   5.3e-06     0.095      81     153 ..     148     237 ..     133     240 .. 0.74

  Alignments for each domain:
  == domain 1  score: 1.9 bits;  conditional E-value: 0.011
                 HHHHHHHHHHHHHHHHHHH....HHHHHHHHHHH......HHHHT-XXXXXXXXXXXX....XXXX.......XXXXXXXXXXXXXXXXXXXXXXXXXX CS
  DASH_Spc19  70 ekaekeleklerreetLka....klelqegrlsnaesskkeeeeseeskeeeeeeenkeeekskkk.......ltkeelerlkkLkqkKerLkytlerL 157
                 e++e+ le  +r +e+L +    +l+ +e+ l + +s+  ++ ++ ++++e  + ++ ++     +       + +e  e l++  +k+erL+ +le+L
  KOO20930.1  14 EELEQALEAAARDKEALATahreELRVKELILADLSSQLVQARQALSTAQEGAKGASAAR-----DvaeretaACREAREALRASEAKRERLETALEEL 107
                 667777777777777775311112333344444433333333333333333332222222.....1223346566777899***************987 PP

  == domain 2  score: 12.6 bits;  conditional E-value: 5.3e-06
                 HHHHHHHHHHHHHHHHHHH......HHHHT-XXXXXXXXXXXX....XXXX.............XXXXXX....XXXXXXXXXXXXXXXX CS
  DASH_Spc19  81 rreetLkaklelqegrlsnaesskkeeeeseeskeeeeeeenkeeekskkk.............ltkeel....erlkkLkqkKerLkyt 153
                  +e++L+a+l+ ++g l+ ++++++++++++e+++e+e+++++e+e++k+              +++e+l    ++l  L++ KerL+ +
  KOO20930.1 148 DKEQQLQAELRERSGMLEAEARQARAATAEAEKATERERQRADEAERQKAAseakallvaaekeAAAEQLsarvAELASLRADKERLEGE 237
                 68999999999999999998887777776666666655555555555444468899998877773333336666*************976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (272 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2499  (0.139383); expected 358.6 (0.02)
Passed bias filter:                      458  (0.0255452); expected 358.6 (0.02)
Passed Vit filter:                        84  (0.00468515); expected 17.9 (0.001)
Passed Fwd filter:                        34  (0.00189637); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.93u 0.35s 00:00:01.28 Elapsed: 00:00:00.53
# Mc/sec: 1554.56
//
Query:       KOO20931.1  [L=275]
Description: leucine-rich repeat and coiled-coil domain-containing protein 1 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.1e-13   51.0   0.2    4.2e-09   36.2   0.0    2.1  2  LRR_9     Leucine-rich repeat
    4.9e-13   49.0   7.6      2e-05   24.8   0.2    3.8  4  LRR_4     Leucine Rich repeats (2 copies)
    1.6e-10   40.6  12.1    3.3e-05   23.6   0.4    2.8  3  LRR_8     Leucine rich repeat
    4.2e-05   23.3   6.4          1    9.6   0.0    4.7  4  LRR_6     Leucine Rich repeat
  ------ inclusion threshold ------
      0.061   13.9   8.3         33    5.6   0.1    4.4  4  LRR_1     Leucine Rich Repeat
      0.072   13.8   0.3         22    5.9   0.0    3.3  3  LRR_2     Leucine Rich Repeat


Domain annotation for each model (and alignments):
>> LRR_9  Leucine-rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.2   0.1   1.1e-07   0.00033      42     116 ..      10      85 ..       5      86 .. 0.85
   2 !   36.2   0.0   1.4e-12   4.2e-09      24     146 ..      62     187 ..      61     191 .. 0.93

  Alignments for each domain:
  == domain 1  score: 20.2 bits;  conditional E-value: 1.1e-07
       LRR_9  42 dqfdtidlsdndir...kldgfPllkrlktlllnnnrivriaegleevlPnleelvltnnelqeladldPlaslkkle 116
                 dq   + l d  i    +l ++P +  l++l l  nri  i++ l e+l  l+ l l++n+++ +++l+ l+ l+ l+
  KOO20931.1  10 DQISELSLYDAGIVslaELSDLPRMTALRSLNLHCNRIEAISN-L-ESLGGLTYLNLSSNHIEAMTNLHGLVRLQTLD 85 
                 7777788888776512267789999999************986.4.789*************************9986 PP

  == domain 2  score: 36.2 bits;  conditional E-value: 1.4e-12
       LRR_9  24 ldlrgykipvienlGatldqfdtidlsdndirkldgfPllkrlktlllnnnrivriaegleevlPnleelvltnnelqeladldPlaslkklellsll. 121
                 l+l ++ i  ++nl   l ++ t+dls n +r +dg+  l+ l+ lll+ nri+ +a  ++    +l ++   +n++  + + + l  l+ l  + l  
  KOO20931.1  62 LNLSSNHIEAMTNLH-GLVRLQTLDLSCNRVRIVDGLATLRSLRRLLLAYNRITSLAGLVQCHGGQLAHFEAYGNRIALIREAEYLRGLPMLAEVVLRr 159
                 689999999999996.57799************************************9999999*******************************9963 PP

       LRR_9 122 ...knpvtnkkeyrlyviyklkqlrlld 146
                    +npv++++ yr+ v+  l+ l+ ld
  KOO20931.1 160 hgqDNPVCREPGYREKVLTLLPGLQTLD 187
                 33369*****************999998 PP

>> LRR_4  Leucine Rich repeats (2 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.7   0.1   1.1e-06    0.0034      13      43 ..      28      54 ..      12      55 .. 0.77
   2 !   24.8   0.2   6.7e-09     2e-05       3      43 ..      59      98 ..      58      99 .. 0.90
   3 !    9.0   0.0   0.00066         2       2      21 ..     102     121 ..     101     130 .. 0.88
   4 ?   -2.1   0.1       1.9   5.8e+03      22      29 ..     180     187 ..     175     187 .. 0.76

  Alignments for each domain:
  == domain 1  score: 17.7 bits;  conditional E-value: 1.1e-06
                --E-S-HHH-TT--EEE-.-S-----GGGGX CS
       LRR_4 13 ltdiplleklpnLkeLdLsgNnlitdldeLk 43
                l+d  l++ ++ L++L+L ++n+i+ +++L+
  KOO20931.1 28 LSD--LPR-MTALRSLNL-HCNRIEAISNLE 54
                334..255.*********.999******997 PP

  == domain 2  score: 24.8 bits;  conditional E-value: 6.7e-09
                --EEE--SS---E-S-HHH-TT--EEE-.-S-----GGGGX CS
       LRR_4  3 LevLdLsnNqltdiplleklpnLkeLdLsgNnlitdldeLk 43
                L++L+Ls+N++    +l +l  L++LdL ++n+++ +d+L+
  KOO20931.1 59 LTYLNLSSNHIEAMTNLHGLVRLQTLDL-SCNRVRIVDGLA 98
                9***************************.777998888875 PP

  == domain 3  score: 9.0 bits;  conditional E-value: 0.00066
                 S--EEE--SS---E-S-HHH CS
       LRR_4   2 nLevLdLsnNqltdipllek 21 
                 +L+ L L+ N++t++ +l +
  KOO20931.1 102 SLRRLLLAYNRITSLAGLVQ 121
                 7*************988775 PP

  == domain 4  score: -2.1 bits;  conditional E-value: 1.9
                 -TT--EEE CS
       LRR_4  22 lpnLkeLd 29 
                 lp L++Ld
  KOO20931.1 180 LPGLQTLD 187
                 78888887 PP

>> LRR_8  Leucine rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.6   3.0   2.3e-08   6.7e-05      24      61 .]      34      69 ..      31      69 .. 0.93
   2 !   23.6   0.4   1.1e-08   3.3e-05      21      61 .]      75     113 ..      71     113 .. 0.93
   3 ?   -3.3   0.0       2.7     8e+03      48      55 ..     180     187 ..     174     187 .. 0.53

  Alignments for each domain:
  == domain 1  score: 22.6 bits;  conditional E-value: 2.3e-08
                -TT--EEE--SS---GGGGGGGTT--S-.EEE--SS-- CS
       LRR_8 24 lsnLkvLdLsnNllttlspgafsgLpsLrsLdLsgNrL 61
                +++L++L+L +N+++ +s   +++L  L++L+Ls+N++
  KOO20931.1 34 MTALRSLNLHCNRIEAIS--NLESLGGLTYLNLSSNHI 69
                789**************9..9***************98 PP

  == domain 2  score: 23.6 bits;  conditional E-value: 1.1e-08
                 STT-TT--EEE--SS---GGGGGGGTT--S-.EEE--SS-- CS
       LRR_8  21 FkglsnLkvLdLsnNllttlspgafsgLpsLrsLdLsgNrL 61 
                  +gl +L++LdLs+N+ + ++   ++ L+sLr L L +Nr+
  KOO20931.1  75 LHGLVRLQTLDLSCNRVRIVD--GLATLRSLRRLLLAYNRI 113
                 67999***************6..****************97 PP

  == domain 3  score: -3.3 bits;  conditional E-value: 2.7
                 --S-.EEE CS
       LRR_8  48 LpsLrsLd 55 
                 Lp L+ Ld
  KOO20931.1 180 LPGLQTLD 187
                 45555543 PP

>> LRR_6  Leucine Rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.7   0.0     0.027        80       5      15 ..      37      47 ..      34      49 .. 0.89
   2 !    9.6   0.0   0.00034         1       5      16 ..      59      70 ..      58      71 .. 0.92
   3 !    7.6   0.1    0.0015       4.6       5      15 ..      81      91 ..      78      92 .. 0.88
   4 ?    2.3   0.1     0.074   2.2e+02       3      16 ..     101     114 ..      99     116 .. 0.89

  Alignments for each domain:
  == domain 1  score: 3.7 bits;  conditional E-value: 0.027
       LRR_6  5 LteLdLsgNdI 15
                L++L+L +N I
  KOO20931.1 37 LRSLNLHCNRI 47
                9********99 PP

  == domain 2  score: 9.6 bits;  conditional E-value: 0.00034
       LRR_6  5 LteLdLsgNdIg 16
                Lt+L+Ls+N+I 
  KOO20931.1 59 LTYLNLSSNHIE 70
                9*********95 PP

  == domain 3  score: 7.6 bits;  conditional E-value: 0.0015
       LRR_6  5 LteLdLsgNdI 15
                L++LdLs+N +
  KOO20931.1 81 LQTLDLSCNRV 91
                99*******75 PP

  == domain 4  score: 2.3 bits;  conditional E-value: 0.074
       LRR_6   3 thLteLdLsgNdIg 16 
                 ++L+ L L++N I+
  KOO20931.1 101 RSLRRLLLAYNRIT 114
                 79**********98 PP

>> LRR_1  Leucine Rich Repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.7   0.4     0.046   1.4e+02       2      13 ..      37      48 ..      36      56 .. 0.75
   2 ?    5.6   0.1     0.011        33       2      12 ..      59      69 ..      58      78 .. 0.84
   3 ?    4.9   0.0     0.018        55       1      11 [.      80      90 ..      80     100 .. 0.83
   4 ?    1.4   0.0      0.25   7.5e+02       1      14 [.     102     115 ..     102     131 .. 0.82

  Alignments for each domain:
  == domain 1  score: 3.7 bits;  conditional E-value: 0.046
       LRR_1  2 LrhLdLsnnpll 13
                Lr+L+L  n+++
  KOO20931.1 37 LRSLNLHCNRIE 48
                9*****999873 PP

  == domain 2  score: 5.6 bits;  conditional E-value: 0.011
       LRR_1  2 LrhLdLsnnpl 12
                L++L+Ls+n++
  KOO20931.1 59 LTYLNLSSNHI 69
                99*******98 PP

  == domain 3  score: 4.9 bits;  conditional E-value: 0.018
       LRR_1  1 nLrhLdLsnnp 11
                +L++LdLs n+
  KOO20931.1 80 RLQTLDLSCNR 90
                69******997 PP

  == domain 4  score: 1.4 bits;  conditional E-value: 0.25
       LRR_1   1 nLrhLdLsnnpllg 14 
                 +Lr+L L +n++++
  KOO20931.1 102 SLRRLLLAYNRITS 115
                 69********9854 PP

>> LRR_2  Leucine Rich Repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.9   0.0    0.0073        22       1      17 [.      36      55 ..      36      59 .. 0.74
   2 ?    3.8   0.0     0.035   1.1e+02       2      15 ..      81      96 ..      80     100 .. 0.75
   3 ?   -0.5   0.0      0.79   2.4e+03       1      14 [.     102     115 ..     102     120 .. 0.77

  Alignments for each domain:
  == domain 1  score: 5.9 bits;  conditional E-value: 0.0073
       LRR_2  1 sLKtLhLdsVrf...sdeds 17
                +L++L+L+++r+   s+ +s
  KOO20931.1 36 ALRSLNLHCNRIeaiSNLES 55
                69*********955444444 PP

  == domain 2  score: 3.8 bits;  conditional E-value: 0.035
       LRR_2  2 LKtLhLdsVrf..sde 15
                L tL L+++r    d+
  KOO20931.1 81 LQTLDLSCNRVriVDG 96
                99******99755555 PP

  == domain 3  score: -0.5 bits;  conditional E-value: 0.79
       LRR_2   1 sLKtLhLdsVrfsd 14 
                 sL+ L+L ++r+++
  KOO20931.1 102 SLRRLLLAYNRITS 115
                 79999999999865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (275 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       471  (0.0262703); expected 358.6 (0.02)
Passed bias filter:                      288  (0.0160634); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.44u 0.27s 00:00:00.71 Elapsed: 00:00:00.43
# Mc/sec: 1940.97
//
Query:       KOO20932.1  [L=1347]
Description: hypothetical protein Ctob_000431 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00081   18.3   1.0    0.00081   18.3   1.0    3.0  3  Anoctamin  Calcium-activated chloride channel
  ------ inclusion threshold ------
       0.71    9.6   5.0        8.7    6.0   1.0    2.7  2  DUF2291    Predicted periplasmic lipoprotein (DUF2291)


Domain annotation for each model (and alignments):
>> Anoctamin  Calcium-activated chloride channel
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.5     0.098   8.8e+02       7      42 ..     328     383 ..     324     440 .. 0.57
   2 !   18.3   1.0     9e-08   0.00081     110     234 ..     676     873 ..     644     904 .. 0.63
   3 !    7.3   3.2    0.0002       1.8     325     366 ..    1005    1046 ..     999    1066 .. 0.90

  Alignments for each domain:
  == domain 1  score: -1.6 bits;  conditional E-value: 0.098
   Anoctamin   7 ekiAlYFawlgfytsallppavlGlllflyglati........................t 42 
                   i lYF +l f t++    a++G+l+ l +l+                           
  KOO20932.1 328 IGIRLYFDFLLFVTCV----AFCGILVSLPSLIASlnylnagaggrdydqdetrfdvsaM 383
                 5577999999999975....5556665553232223334555555555555555555540 PP

  == domain 2  score: 18.3 bits;  conditional E-value: 9e-08
   Anoctamin 110 yyppwkrrlfrllvslplvllliclavvgvlil..................................rcla............................ 146
                  y+++ rr++ ++v + ++  ++ la+ ++  +                                  +                               
  KOO20932.1 676 DYSTKVRRCIAWCVLVCVI--IVSLAISITA-FtlssvgaslsviveqelqrgtaqfsnataqtiklT--Ctadkkalignvtdylafftavyeevgaa 769
                 2344445777777766544..3333222222.223445555555555555555555555555555550..05555555555555555544544553333 PP

   Anoctamin 147 .....lqelvssvke.....................llsflptvlnlvlililnevykklaiwltdlEnhrtqseyekslilKvflfqfvnsylslfyi 219
                      +        +                      +++  +v   ++ +iln v +++   l d+ n  t +e++  ++l v l qf+n+ + +f+i
  KOO20932.1 770 fssnnT--------DatlaalarsdnidvaldvmdcYITTALSVFTSFITIILNLVITSVVSSLADFSNFSTYTEVNMFVVLAVALAQFLNTAVVIFII 860
                 333330........255555555556677766544333355566667777788********************************************** PP

   Anoctamin 220 aFvkgkflkypgkyl 234
                     g   +yp ++ 
  KOO20932.1 861 NWSTG--IQYPYPRD 873
                 99987..66665554 PP

  == domain 3  score: 7.3 bits;  conditional E-value: 0.0002
   Anoctamin  325 GyvtlFsaafPlapllallnniieirldafklvtelrRpvpe 366 
                  G v +Fs+  P+ +l++l+++++   +d++ +++++r p p 
  KOO20932.1 1005 GVVLVFSSLMPILFLFMLVFCFLAYFVDKWAFLRIYRTPPPF 1046
                  8899*********************************99765 PP

>> DUF2291  Predicted periplasmic lipoprotein (DUF2291)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.0   1.0   0.00097       8.7      42     121 ..      14      93 ..      10      98 .. 0.84
   2 ?    4.2   0.2    0.0035        31      81     121 ..     109     148 ..     107     155 .. 0.76

  Alignments for each domain:
  == domain 1  score: 6.0 bits;  conditional E-value: 0.00097
                 HHHHHH--SEEHHHHHHHHHH-HHHHHHHHEB-.-TTSSEEEEEEEEEEEEEEEETTE......EEEE-SSS-SS-SEEEE CS
     DUF2291  42 llpaleekAvdlaellaalkadpeaagekygkr.vgissplvfaVkgtGtvvsvdtesragtltvdvdgddgkadvkvqiG 121
                 ++++++e+A++ a+l ++++a+ ++a+ k   +  g+s ++  a    G+  s+ + + + t+tv  + ++g+ ++k+ +G
  KOO20932.1  14 MVNEAAESAAESARLSTEMAAKLDQAATKLQAAhRGTSTRKLGAAAAAGRAASARDVTLRFTITVPAKKKAGD-TIKMELG 93 
                 567788**************************9999***************9999999888888887776655.4555554 PP

  == domain 2  score: 4.2 bits;  conditional E-value: 0.0035
                 EEEEEEEEEEEEEEETTE......EEEE-SSS-SS-SEEEE CS
     DUF2291  81 lvfaVkgtGtvvsvdtesragtltvdvdgddgkadvkvqiG 121
                 ++ +V gtG+vv+ ++++++ t+tv  + ++g++ +k+ +G
  KOO20932.1 109 RILIVDGTGKVVEEEKADQRFTITVPAKKKAGDT-IKMELG 148
                 6789*******99999998888888888876654.555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1347 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1225  (0.0683251); expected 358.6 (0.02)
Passed bias filter:                      621  (0.0346366); expected 358.6 (0.02)
Passed Vit filter:                        49  (0.002733); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.91u 0.30s 00:00:01.21 Elapsed: 00:00:00.47
# Mc/sec: 8705.46
//
Query:       KOO20933.1  [L=789]
Description: hypothetical protein Ctob_000430 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.3e-29  103.2   7.0    2.1e-29  102.5   7.0    1.3  1  Ion_trans    Ion transport protein
    0.00033   19.5   7.5     0.0091   14.7   0.9    2.8  3  PKD_channel  Polycystin cation channel
  ------ inclusion threshold ------
        1.3    9.0   4.9          3    7.7   4.9    1.6  1  DUF5090      Domain of unknown function (DUF5090)


Domain annotation for each model (and alignments):
>> Ion_trans  Ion transport protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  102.5   7.0   3.6e-33   2.1e-29       7     238 ..      52     303 ..      46     308 .. 0.85

  Alignments for each domain:
  == domain 1  score: 102.5 bits;  conditional E-value: 3.6e-33
                 HHHHHHHHHHHHHHCCCSSSSHHHHC...HHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHCHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHG CS
   Ion_trans   7 filllillncvflaletyfpedelek...tileilelvftaiftlemllkilalgllikkrYlrdpwnilDflvvlpsllslvlseesllllsvlrlfr 102
                  + l+i+ n v+  +e   ++d ++     ++  ++++f++if++e+  +++++g    k++++  wni+D ++v ++++++ +     + +  l+l+r
  KOO20933.1  52 AVALIIMANFVINIVEKEIDPDANDLqypGLWYGADTFFNIIFIFELWANVWGYGG-PVKEWITG-WNIFDTIIVAVGVATMANV--LGPPFDKLKLMR 146
                 67899************999988877999************************655.24777777.9***************553..488899999999 PP

                 GGGGGHHHCHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCCCC.....................SCCSTSSSTTTSSSSSSHH CS
   Ion_trans 103 vlrllklisrleglrtlvtalirsvkdllnvlllllvvlfifaligvqlfkgklrekne.....................caktwenpnngntnFdnff 180
                  +r+++l++r++ l  ++ ++++s++++ + ++++++++ i+a+++v+lf        +                      + t+++  +g   + +f+
  KOO20933.1 147 AFRVFRLFKRVKELNQIIVSILKSIPAVSYAFVVMFIFFAIYAILAVELF--------RgfgaggsyetyddvtddtlviTSLTKRGYVYGMEYYGTFS 237
                 9999999999999999**********************************........112222333344445555566655666666777777888** PP

                 HHHHHHHHHHTTSSHHHHHHHHHHHS........HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
   Ion_trans 181 tallwlfrlmttegwgdilyatldek........skvaliyfvifiilgsflllNlliaviadnfq 238
                  a+++lf++ ++e w + ++ +l             + l+yf +f il+ ++llN+++av  d+f 
  KOO20933.1 238 RAMYTLFQVQSGESWSEAVARPLIFGltstgggdDPIVLTYFYSFRILMKVVLLNVVVAVLLDSFG 303
                 *****************99988876679999*********************************96 PP

>> PKD_channel  Polycystin cation channel
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.3   0.1     0.054   3.2e+02     219     260 ..      88     131 ..      74     136 .. 0.81
   2 !   14.7   0.9   1.5e-06    0.0091     307     357 ..     142     192 ..     141     249 .. 0.82
   3 !    7.3   0.1   0.00027       1.6     399     423 ..     278     302 ..     262     304 .. 0.92

  Alignments for each domain:
  == domain 1  score: -0.3 bits;  conditional E-value: 0.054
                  HHHHHHHHHHHH-------..-------HHHHHHHHHHHHHHHH CS
  PKD_channel 219 vvfvlyfvveeilkirker..asylrsvwnlldlaivvlsvvli 260
                  ++f + f++e   +++  +   +   + wn+ d +iv++ v+++
   KOO20933.1  88 TFFNIIFIFELWANVWGYGgpVKEWITGWNIFDTIIVAVGVATM 131
                  6788999999999999887666777799*********9999886 PP

  == domain 2  score: 14.7 bits;  conditional E-value: 1.5e-06
                  HHHHGGGGG------------------------HHHHHHHHHHHHHHHHHH CS
  PKD_channel 307 lttlkllkvlrfnktlslltktlaralkdvlgfalvivilflayaqlgvll 357
                  l ++++++v r++k+++ l + + + lk + +++ ++v++f+ +a+ ++l 
   KOO20933.1 142 LKLMRAFRVFRLFKRVKELNQIIVSILKSIPAVSYAFVVMFIFFAIYAILA 192
                  6789*****************999888888777777777777777766653 PP

  == domain 3  score: 7.3 bits;  conditional E-value: 0.00027
                  HHHHHHHHHHHHHHHHHHHHHHT-X CS
  PKD_channel 399 lllalvflvifillnlflaiindsy 423
                  ++ ++ +l+ ++lln+++a++ ds+
   KOO20933.1 278 YFYSFRILMKVVLLNVVVAVLLDSF 302
                  8999*******************98 PP

>> DUF5090  Domain of unknown function (DUF5090)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.7   4.9   0.00051         3     110     158 ..     142     190 ..      88     196 .. 0.82

  Alignments for each domain:
  == domain 1  score: 7.7 bits;  conditional E-value: 0.00051
     DUF5090 110 selsslfkvflllkiikllitlivllalsistglfilvlsliylllcli 158
                 ++l+  f vf l k +k l+ +iv++  si    + +v ++i+++  +i
  KOO20933.1 142 LKLMRAFRVFRLFKRVKELNQIIVSILKSIPAVSYAFVVMFIFFAIYAI 190
                 578899*************************889999999999887665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (789 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       638  (0.0355848); expected 358.6 (0.02)
Passed bias filter:                      463  (0.0258241); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.64u 0.31s 00:00:00.95 Elapsed: 00:00:00.46
# Mc/sec: 5109.09
//
Query:       KOO20934.1  [L=320]
Description: zinc finger protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    4.2e-10   39.8   8.0    6.6e-08   32.8   3.2    2.3  2  zf-RING_2      Ring finger domain
    3.4e-09   36.8   2.5    6.1e-09   36.0   2.5    1.4  1  zf-rbx1        RING-H2 zinc finger domain
    7.1e-05   22.7   2.8    0.00026   20.9   2.8    1.9  1  zf-RING_UBOX   RING-type zinc-finger
    0.00016   21.4   8.1    0.00021   21.1   2.0    2.4  3  zf-C3HC4_2     Zinc finger, C3HC4 type (RING finger)
    0.00016   21.4   3.1     0.0023   17.7   3.1    2.2  1  zf-C3HC4       Zinc finger, C3HC4 type (RING finger)
     0.0026   17.6   1.5       0.84    9.5   0.5    2.3  2  zf-C3HC4_3     Zinc finger, C3HC4 type (RING finger)
     0.0045   17.1   2.3      0.041   14.0   2.3    2.1  1  RINGv          RING-variant domain
  ------ inclusion threshold ------
      0.011   15.7   0.1      0.011   15.7   0.1    1.6  2  zf-ANAPC11     Anaphase-promoting complex subunit 11 RING-H2 
      0.023   14.4   4.4        1.3    8.8   1.4    2.4  2  zf-RING_11     RING-like zinc finger
      0.031   13.9   2.3       0.13   11.9   0.1    2.2  2  zf-P11         P-11 zinc finger
       0.15   12.0   4.9        1.3    9.0   4.1    2.2  2  zf-RING_5      zinc-RING finger domain
       0.15   11.9   6.0       0.75    9.7   0.6    2.4  2  Prok-RING_4    Prokaryotic RING finger family 4
        1.2    9.3   4.2        6.7    7.0   4.2    2.1  1  FANCL_C        FANCL C-terminal domain
        2.9    7.8   4.5         23    4.9   0.1    3.1  4  Rad50_zn_hook  Rad50 zinc hook motif
          4    7.3   4.6         14    5.6   1.0    2.7  2  GAGA           GAGA factor


Domain annotation for each model (and alignments):
>> zf-RING_2  Ring finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.1   0.8   0.00015      0.18       2      22 ..     199     219 ..     198     224 .. 0.91
   2 !   32.8   3.2   5.5e-11   6.6e-08       6      44 .]     218     254 ..     216     254 .. 0.96

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 0.00015
   zf-RING_2   2 eCpICleelssadsvlllpCg 22 
                 +CpICle++++ +++l +pC 
  KOO20934.1 199 SCPICLEPITDLSEALEMPCT 219
                 7***************99**5 PP

  == domain 2  score: 32.8 bits;  conditional E-value: 5.5e-11
   zf-RING_2   6 CleelssadsvlllpCgHvfhreClerwlrssstCPlCr 44 
                 C+ els++ s++++  +H fhr Cl++wl ++stCP+Cr
  KOO20934.1 218 CTRELSRDASAPAV--SHAFHRPCLQQWLGTRSTCPVCR 254
                 9999*999999999..9*********************9 PP

>> zf-rbx1  RING-H2 zinc finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.0   2.5   5.1e-12   6.1e-09       2      55 .]     199     254 ..     198     254 .. 0.84

  Alignments for each domain:
  == domain 1  score: 36.0 bits;  conditional E-value: 5.1e-12
     zf-rbx1   2 tCaiCrneleeacieckapgdee..cpvvlGeCgHaFHlhCiskWlktrkvCPlcr 55 
                 +C iC +++++     + p ++e        + +HaFH  C+++Wl tr++CP+cr
  KOO20934.1 199 SCPICLEPITDLSEALEMPCTRElsRDASAPAVSHAFHRPCLQQWLGTRSTCPVCR 254
                 69********999888888888875333344669*********************8 PP

>> zf-RING_UBOX  RING-type zinc-finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.9   2.8   2.2e-07   0.00026       1      39 []     200     251 ..     200     251 .. 0.90

  Alignments for each domain:
  == domain 1  score: 20.9 bits;  conditional E-value: 2.2e-07
  zf-RING_UBOX   1 CpIClelft...................dPlvlpCGHtFCreClwelskslegafkCP 39 
                   CpICle+ t                    P     +H F+r+Cl   +++l+++ +CP
    KOO20934.1 200 CPICLEPITdlsealempctrelsrdasAPA---VSHAFHRPCL---QQWLGTRSTCP 251
                   *********9999999888888888877773...49********...9*********9 PP

>> zf-C3HC4_2  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.8   0.6      0.19   2.2e+02      31      40 .]     193     203 ..     187     203 .. 0.74
   2 ?    3.2   0.7     0.066        78       2      11 ..     200     209 ..     199     220 .. 0.75
   3 !   21.1   2.0   1.7e-07   0.00021      19      40 .]     232     253 ..     218     253 .. 0.86

  Alignments for each domain:
  == domain 1  score: 1.8 bits;  conditional E-value: 0.19
  zf-C3HC4_2  31 Leekn.eCPlC 40 
                 L++   +CP+C
  KOO20934.1 193 LDQTPaSCPIC 203
                 66677799999 PP

  == domain 2  score: 3.2 bits;  conditional E-value: 0.066
  zf-C3HC4_2   2 CpiCldmlkd 11 
                 CpiCl+ + d
  KOO20934.1 200 CPICLEPITD 209
                 99**998876 PP

  == domain 3  score: 21.1 bits;  conditional E-value: 1.7e-07
  zf-C3HC4_2  19 gHvfCqkCilrsLeekneCPlC 40 
                  H f++ C++++L   + CP+C
  KOO20934.1 232 SHAFHRPCLQQWLGTRSTCPVC 253
                 7********************* PP

>> zf-C3HC4  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.7   3.1     2e-06    0.0023       1      41 []     200     253 ..     200     253 .. 0.90

  Alignments for each domain:
  == domain 1  score: 17.7 bits;  conditional E-value: 2e-06
                 -TTT-S--SS-E................E-TTS--B-CHHHHHHHHCTSSB--TTT CS
    zf-C3HC4   1 CpiCleeakepn...............elleCkHsfCskCirkilksrkkvkCPlC 41 
                 CpiCle +++ +                +    H+f+++C++++l   +  +CP+C
  KOO20934.1 200 CPICLEPITDLSealempctrelsrdaSAPAVSHAFHRPCLQQWLG--TRSTCPVC 253
                 99****999999999999999999987666679*************..8889**** PP

>> zf-C3HC4_3  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.7   0.0    0.0055       6.6      37      49 ..     197     209 ..     190     210 .. 0.82
   2 !    9.5   0.5   0.00071      0.84      27      44 ..     237     254 ..     217     258 .. 0.84

  Alignments for each domain:
  == domain 1  score: 6.7 bits;  conditional E-value: 0.0055
                 T-B-TTT--B--E CS
  zf-C3HC4_3  37 kkkCpiCrrpiek 49 
                  ++CpiC +pi++
  KOO20934.1 197 PASCPICLEPITD 209
                 679*******986 PP

  == domain 2  score: 9.5 bits;  conditional E-value: 0.00071
                 HHHHHHHHHTT-B-TTT- CS
  zf-C3HC4_3  27 eeCaekllkrkkkCpiCr 44 
                   C++++l  + +Cp+Cr
  KOO20934.1 237 RPCLQQWLGTRSTCPVCR 254
                 57*****99********9 PP

>> RINGv  RING-variant domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.0   2.3   3.5e-05     0.041       1      48 []     200     253 ..     200     253 .. 0.67

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 3.5e-05
                 ETTTTEE-SSSS.--B-SS--STC........CCSB-HHHHHHHHHHTCT-SB-TTT CS
       RINGv   1 CriCleeeeese.plispCkCrGs........lklvHesClekWldekeantqCeiC 48 
                 C iCle  ++ + +l++pC  + s         + +H+ Cl++Wl +    ++C +C
  KOO20934.1 200 CPICLEPITDLSeALEMPCTRELSrdasapavSHAFHRPCLQQWLGT---RSTCPVC 253
                 778888877766677777754322111111115789**********9...8899999 PP

>> zf-ANAPC11  Anaphase-promoting complex subunit 11 RING-H2 finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.1       7.3   8.8e+03      34      41 ..     199     206 ..     195     220 .. 0.69
   2 ?   15.7   0.1   9.5e-06     0.011      52      81 ..     231     257 ..     225     261 .. 0.84

  Alignments for each domain:
  == domain 1  score: -3.2 bits;  conditional E-value: 7.3
                 --TTCSTT CS
  zf-ANAPC11  34 tcpsckfp 41 
                 +cp c  p
  KOO20934.1 199 SCPICLEP 206
                 46666555 PP

  == domain 2  score: 15.7 bits;  conditional E-value: 9.5e-06
                 TS-EEEHHHHHHHHHHHSTSSB-TTTSSB- CS
  zf-ANAPC11  52 ckhnfhlhcilkwletetskglcpmcrqtf 81 
                  +h+fh  c+++wl t+   + cp+cr ++
  KOO20934.1 231 VSHAFHRPCLQQWLGTR---STCPVCRFAL 257
                 68************875...68****9765 PP

>> zf-RING_11  RING-like zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.8   1.4    0.0011       1.3       2      20 ..     200     218 ..     199     219 .. 0.88
   2 ?    6.1   0.1    0.0079       9.4      21      29 .]     232     240 ..     228     240 .. 0.93

  Alignments for each domain:
  == domain 1  score: 8.8 bits;  conditional E-value: 0.0011
  zf-RING_11   2 CsICLeefkpgqalfilpC 20 
                 C ICLe++++  +   +pC
  KOO20934.1 200 CPICLEPITDLSEALEMPC 218
                 *********9888888899 PP

  == domain 2  score: 6.1 bits;  conditional E-value: 0.0079
  zf-RING_11  21 sHtFHfkCI 29 
                 sH+FH  C+
  KOO20934.1 232 SHAFHRPCL 240
                 8*******5 PP

>> zf-P11  P-11 zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.5   0.2       0.2   2.4e+02      37      45 ..     199     207 ..     193     210 .. 0.84
   2 ?   11.9   0.1   0.00011      0.13      21      48 ..     233     260 ..     230     261 .. 0.90

  Alignments for each domain:
  == domain 1  score: 1.5 bits;  conditional E-value: 0.2
                 BETTTSSB- CS
      zf-P11  37 rCpiCkkPL 45 
                  CpiC  P+
  KOO20934.1 199 SCPICLEPI 207
                 6****9996 PP

  == domain 2  score: 11.9 bits;  conditional E-value: 0.00011
                 SEEEHHHHHHHHHHSSBETTTSSB---- CS
      zf-P11  21 HYLClrClqllLsvserCpiCkkPLPtk 48 
                 H   + Clq  L     Cp+C+  LPt+
  KOO20934.1 233 HAFHRPCLQQWLGTRSTCPVCRFALPTE 260
                 666788********************95 PP

>> zf-RING_5  zinc-RING finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.2   0.5      0.32   3.8e+02      35      42 ..     196     203 ..     187     205 .. 0.79
   2 ?    9.0   4.1    0.0011       1.3      19      43 ..     230     254 ..     199     255 .. 0.70

  Alignments for each domain:
  == domain 1  score: 1.2 bits;  conditional E-value: 0.32
   zf-RING_5  35 keavCpiC 42 
                  +a CpiC
  KOO20934.1 196 TPASCPIC 203
                 4789***9 PP

  == domain 2  score: 9.0 bits;  conditional E-value: 0.0011
   zf-RING_5  19 sCgHifCekClkkllekeavCpiCr 43 
                 + +H f+  Cl++ l+ + +Cp+Cr
  KOO20934.1 230 AVSHAFHRPCLQQWLGTRSTCPVCR 254
                 448*********************8 PP

>> Prok-RING_4  Prokaryotic RING finger family 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.6   0.5     0.025        30      30      40 ..     197     207 ..     188     212 .. 0.76
   2 ?    9.7   0.6   0.00063      0.75      18      38 ..     233     255 ..     217     261 .. 0.81

  Alignments for each domain:
  == domain 1  score: 4.6 bits;  conditional E-value: 0.025
  Prok-RING_4  30 lssCPlCqrri 40 
                   +sCP+C + i
   KOO20934.1 197 PASCPICLEPI 207
                  459****8766 PP

  == domain 2  score: 9.7 bits;  conditional E-value: 0.00063
  Prok-RING_4  18 HlvCkeCfdsk..dlssCPlCqr 38 
                  H + + C++++    s+CP+C+ 
   KOO20934.1 233 HAFHRPCLQQWlgTRSTCPVCRF 255
                  777789*****88888*****95 PP

>> FANCL_C  FANCL C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.0   4.2    0.0056       6.7       4      45 ..     199     248 ..     196     259 .. 0.67

  Alignments for each domain:
  == domain 1  score: 7.0 bits;  conditional E-value: 0.0056
                 S-SSS--SS-TT-----B--........S-TT----B-SGGGHHHHHHHH CS
     FANCL_C   4 eCgiCyayrldsgevpdisC........dnekCnkkfHsaCLkeWlrslk 45 
                 +C+iC+    d +e  ++ C          +  ++ fH+ CL++Wl + +
  KOO20934.1 199 SCPICLEPITDLSEALEMPCtrelsrdaSAPAVSHAFHRPCLQQWLGTRS 248
                 577777766666666665552211111123567889**********8765 PP

>> Rad50_zn_hook  Rad50 zinc hook motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.2   0.1     0.066        79      16      31 ..     194     209 ..     193     214 .. 0.80
   2 ?   -2.9   0.1       5.3   6.3e+03      25      32 ..     218     225 ..     218     227 .. 0.86
   3 ?    4.9   0.1     0.019        23      21      33 ..     249     261 ..     243     265 .. 0.81
   4 ?   -2.7   0.0       4.7   5.7e+03       3      15 ..     278     290 ..     277     292 .. 0.77

  Alignments for each domain:
  == domain 1  score: 3.2 bits;  conditional E-value: 0.066
                    TT-SEE-TTT--EE-H CS
  Rad50_zn_hook  16 keakgcCPlCgRelde 31 
                     ++ ++CP C  ++++
     KOO20934.1 194 DQTPASCPICLEPITD 209
                    567789****999886 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 5.3
                    T--EE-HH CS
  Rad50_zn_hook  25 CgReldee 32 
                    C Rel+++
     KOO20934.1 218 CTRELSRD 225
                    99**9987 PP

  == domain 3  score: 4.9 bits;  conditional E-value: 0.019
                    E-TTT--EE-HHH CS
  Rad50_zn_hook  21 cCPlCgReldeeh 33 
                     CP+C   l++e+
     KOO20934.1 249 TCPVCRFALPTEE 261
                    8****98888886 PP

  == domain 4  score: -2.7 bits;  conditional E-value: 4.7
                    HHHHHHHHHHHHH CS
  Rad50_zn_hook   3 qeteelnkkieel 15 
                    ++++e+ +++e++
     KOO20934.1 278 ATIAEIAENAEMV 290
                    5788888888876 PP

>> GAGA  GAGA factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.6   1.0     0.012        14      23      31 ..     196     204 ..     194     209 .. 0.83
   2 ?    1.7   0.1      0.18   2.2e+02      25      31 ..     248     254 ..     245     257 .. 0.85

  Alignments for each domain:
  == domain 1  score: 5.6 bits;  conditional E-value: 0.012
                 --EE-TTT- CS
        GAGA  23 qPAtCPiCq 31 
                  PA CPiC 
  KOO20934.1 196 TPASCPICL 204
                 5*******6 PP

  == domain 2  score: 1.7 bits;  conditional E-value: 0.18
                 EE-TTT- CS
        GAGA  25 AtCPiCq 31 
                  tCP+C 
  KOO20934.1 248 STCPVCR 254
                 6*****6 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (320 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       550  (0.0306766); expected 358.6 (0.02)
Passed bias filter:                      420  (0.0234257); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                        15  (0.000836633); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              15  [number of targets reported over threshold]
# CPU time: 0.45u 0.25s 00:00:00.70 Elapsed: 00:00:00.41
# Mc/sec: 2341.15
//
Query:       KOO20935.1  [L=1311]
Description: ankyrin repeat protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.6e-20   73.4   0.0    3.9e-13   49.8   0.0    2.5  2  Ank_2            Ankyrin repeats (3 copies)
    5.4e-16   58.4   0.4    5.2e-11   42.6   0.2    2.7  2  Ank_5            Ankyrin repeats (many copies)
    3.4e-15   56.2   1.6    1.1e-08   35.5   0.1    3.4  3  Ank_4            Ankyrin repeats (many copies)
    4.5e-12   45.8   0.2    0.00095   19.5   0.1    3.9  3  Ank              Ankyrin repeat
    2.2e-08   33.7   0.0     0.0068   16.8   0.0    3.3  2  Ank_3            Ankyrin repeat
    8.7e-05   21.4   0.1    0.00012   20.9   0.1    1.1  1  Aa_trans         Transmembrane amino acid transporter protein
    0.00026   21.4   0.2     0.0045   17.4   0.0    3.0  3  DUF4231          Protein of unknown function (DUF4231)
  ------ inclusion threshold ------
      0.017   14.6   0.0      0.046   13.2   0.0    1.7  1  EF-hand_5        EF hand
      0.024   13.8   0.0      0.047   12.8   0.0    1.4  1  Methyltrans_SAM  S-adenosylmethionine-dependent methyltransfe
       0.18   11.4   0.0       0.53   10.0   0.0    1.8  1  EF-hand_1        EF hand


Domain annotation for each model (and alignments):
>> Ank_2  Ankyrin repeats (3 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.8   0.0   2.2e-16   3.9e-13      15      83 .]     260     339 ..     246     339 .. 0.86
   2 !   31.1   0.0   1.5e-10   2.6e-07      24      75 ..     306     363 ..     299     370 .. 0.77

  Alignments for each domain:
  == domain 1  score: 49.8 bits;  conditional E-value: 2.2e-16
       Ank_2  15 lLl.egadpn.k...ngktaLhyAakngnleivklLleh......adndgrtpLhyAarsghleivklLlekgadinlkd 83 
                  L+ +g d+n k    g+t+L++Aa ng+l +v++Ll++      +d + +t+LhyAa  ++++iv+ Ll +g+++ +kd
  KOO20935.1 260 ALIaSGGDINwKrpaSGWTPLMIAAGNGHLPCVETLLAAgvqvdaTDLTQWTALHYAAGGNRPNIVRRLLASGSNKAMKD 339
                 577899999994568**********************967776655688*********8899********99*9999887 PP

  == domain 2  score: 31.1 bits;  conditional E-value: 1.5e-10
       Ank_2  24 k.ngktaLhyAakngnleivklLleh......adndgrtpLhyAarsghleivklLlek 75 
                 + + +taLhyAa ++  +iv+ Ll+        dndg+t+L +A ++ h  +v  Ll++
  KOO20935.1 306 DlTQWTALHYAAGGNRPNIVRRLLASgsnkamKDNDGKTALDLARWERH-AAVIALLDS 363
                 3467**********999*******8555567666**********75555.888888866 PP

>> Ank_5  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.4   0.0   2.6e-07   0.00047       8      46 ..     267     306 ..     261     308 .. 0.79
   2 !   42.6   0.2   2.9e-14   5.2e-11       1      56 []     295     349 ..     295     349 .. 0.89

  Alignments for each domain:
  == domain 1  score: 20.4 bits;  conditional E-value: 2.6e-07
       Ank_5   8 dvnrldgggn.tpLhvAakygaadvvrlLlargadlnltd 46 
                 d+n++++ +  tpL++Aa +g++++v+ Lla g+  ++td
  KOO20935.1 267 DINWKRPASGwTPLMIAAGNGHLPCVETLLAAGVQVDATD 306
                 45555554444*******************9999999887 PP

  == domain 2  score: 42.6 bits;  conditional E-value: 2.9e-14
       Ank_5   1 Llehg.padvnrldgggntpLhvAakygaadvvrlLlargadlnltdsrGltaldlA 56 
                 Ll++g ++d  +l ++  t+Lh+Aa ++++++vr+Lla g++  ++d++G+taldlA
  KOO20935.1 295 LLAAGvQVDATDLTQW--TALHYAAGGNRPNIVRRLLASGSNKAMKDNDGKTALDLA 349
                 899**55555555555..**************************************9 PP

>> Ank_4  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.3   0.0   7.1e-07    0.0013      21      55 .]     262     296 ..     260     296 .. 0.82
   2 !   35.5   0.1     6e-12   1.1e-08       3      55 .]     278     329 ..     277     329 .. 0.96
   3 !   17.9   0.1     2e-06    0.0035       2      54 ..     310     360 ..     309     361 .. 0.85

  Alignments for each domain:
  == domain 1  score: 19.3 bits;  conditional E-value: 7.1e-07
       Ank_4  21 lekgadinaqdnrsGetalhiAakrgnveilklLl 55 
                 +++g din   ++sG+t+l iAa +g++ +++ Ll
  KOO20935.1 262 IASGGDINWKRPASGWTPLMIAAGNGHLPCVETLL 296
                 556555555559********************997 PP

  == domain 2  score: 35.5 bits;  conditional E-value: 6e-12
       Ank_4   3 taLhyaaisgrlelvrlLlekgadinaqdnrsGetalhiAakrgnveilklLl 55 
                 t+L  aa  g+l++v+ Ll+ g++++a+ +  ++talh+Aa +++++i++ Ll
  KOO20935.1 278 TPLMIAAGNGHLPCVETLLAAGVQVDAT-DLTQWTALHYAAGGNRPNIVRRLL 329
                 89999999********************.********************9887 PP

  == domain 3  score: 17.9 bits;  conditional E-value: 2e-06
       Ank_4   2 ltaLhyaaisgrlelvrlLlekgadinaqdnrsGetalhiAakrgnveilklL 54 
                 +taLhyaa  +r  +vr+Ll++g +  +  +++G tal+ A ++++  +++ L
  KOO20935.1 310 WTALHYAAGGNRPNIVRRLLASGSNKAMK-DNDGKTALDLA-RWERHAAVIAL 360
                 69**********************98898.999******99.66655555555 PP

>> Ank  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.5   0.1   5.3e-07   0.00095       2      31 ..     276     306 ..     275     307 .. 0.93
   2 !   18.2   0.0   1.4e-06    0.0025       3      32 .]     310     340 ..     309     340 .. 0.87
   3 ?    3.6   0.0     0.055        99       1      22 [.     341     361 ..     341     371 .. 0.80

  Alignments for each domain:
  == domain 1  score: 19.5 bits;  conditional E-value: 5.3e-07
                 SBBHHHHHHHHTTHHHHHHHH.TTTSTTCBT CS
         Ank   2 GnTPLHlAatngkkriiklLL.hGAnlnald 31 
                 G+TPL++Aa ng++ +++ LL  G  ++a+d
  KOO20935.1 276 GWTPLMIAAGNGHLPCVETLLaAGVQVDATD 306
                 9********************8899999998 PP

  == domain 2  score: 18.2 bits;  conditional E-value: 1.4e-06
                 BBHHHHHHHHTT.HHHHHHHH.TTTSTTCBTT CS
         Ank   3 nTPLHlAatngk.kriiklLL.hGAnlnaldn 32 
                 +T+LH+Aa +g+ ++i++ LL +G+n +++dn
  KOO20935.1 310 WTALHYAA-GGNrPNIVRRLLaSGSNKAMKDN 340
                 7*******.555599******99*99888886 PP

  == domain 3  score: 3.6 bits;  conditional E-value: 0.055
                 TSBBHHHHHHHHTTHHHHHHHH CS
         Ank   1 dGnTPLHlAatngkkriiklLL 22 
                 dG T+L lA ++ ++ +i  LL
  KOO20935.1 341 DGKTALDLARWERHAAVIA-LL 361
                 8*******88888888998.55 PP

>> Ank_3  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   0.0   3.8e-06    0.0068       2      30 ..     276     303 ..     275     304 .. 0.91
   2 !   13.2   0.0   5.7e-05       0.1       2      23 ..     309     330 ..     308     336 .. 0.89

  Alignments for each domain:
  == domain 1  score: 16.8 bits;  conditional E-value: 3.8e-06
       Ank_3   2 GetpLhlAarsgnleivkfLlenkgadvn 30 
                 G+tpL++Aa +g+l+ v+ Ll   g+ v+
  KOO20935.1 276 GWTPLMIAAGNGHLPCVETLLA-AGVQVD 303
                 9**************9*****9.788776 PP

  == domain 2  score: 13.2 bits;  conditional E-value: 5.7e-05
       Ank_3   2 GetpLhlAarsgnleivkfLle 23 
                 ++t+Lh+Aa  ++++iv+ Ll 
  KOO20935.1 309 QWTALHYAAGGNRPNIVRRLLA 330
                 69******************98 PP

>> Aa_trans  Transmembrane amino acid transporter protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.9   0.1   6.8e-08   0.00012     150     361 ..       4     259 ..       1     263 [. 0.82

  Alignments for each domain:
  == domain 1  score: 20.9 bits;  conditional E-value: 6.8e-08
    Aa_trans 150 lSllalvsslyyivilvlvvaelvklelkgvseetv..kkasklkglflaigiivFAftghavlleiqnelkdpskfk.kmtkvlllsiilatvlyilv 245
                 +Sll++ ++    v+++++ +   ++++++   +t+  +  +   +l+ a++i+ FA+  +   l++   l   ++   +   +l+++++++ + y++v
  KOO20935.1   4 VSLLGVALM----VAISAYLVFSAVMRDTDADADTLllSLPQGSMKLTEAASIFGFAWYVQPYPLPLLRALPPGEQGAaTLVAALHVTFVITGMAYLSV 98 
                 455555555....555666666666666666666666644444459*************************995554448999**************** PP

    Aa_trans 246 GlvGYltFGne.vkgnillnlpkssilivivnlllvlhlilsfplqlhplrqvvenllikk...................................... 305
                 Gl G + FG+  v+  +l+ +  +  +  +   +++l l+l f  ++ plr+ +  l+++                                       
  KOO20935.1  99 GLGGLFLFGEGhVPQDVLQGFHGR--VGGTLAGAFCLYLMLCFAPNVVPLRETLVRLYHESpmdssltkpmdssltkpmdssltkpmdssltkptvsra 195
                 *********964999******977..788999999999999999999***********999************************************99 PP

    Aa_trans 306 .......eavagasekeapkskllrlvirlllvvityliAlsvpsl.akvlslvGatsstplsf 361
                        e     s   a +  l+   ++++lv ++  +A+  p   a++++l+Gat++  + +
  KOO20935.1 196 lnpsrshEDAMLPSSRSAVLPPLQNAAFTAALVGSSFGVAAVLPDAsAQIFALTGATGVCAIGY 259
                 999888633333444444455566999*************888765379*********988876 PP

>> DUF4231  Protein of unknown function (DUF4231)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.1   0.0        10   1.8e+04      65      81 ..     557     573 ..     554     574 .. 0.80
   2 ?   -0.6   0.0         1   1.8e+03       4      32 ..     926     954 ..     923     975 .. 0.79
   3 !   17.4   0.0   2.5e-06    0.0045      31      98 ..    1028    1095 ..    1025    1098 .. 0.95

  Alignments for each domain:
  == domain 1  score: -4.1 bits;  conditional E-value: 10
     DUF4231  65 effrykerWrryRstaE 81 
                 ++  ++e W+ +R+ +E
  KOO20935.1 557 ALPSFNEFWTDARAQSE 573
                 5667999*****99777 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 1
     DUF4231   4 swyekkasrakrrfrllrlitivlgallp 32 
                 +++e+ a r + + ++l++it ++++l +
  KOO20935.1 926 DKFERIADRLQLLLYSLAIITTLAAILYT 954
                 56778888888888888888887777655 PP

  == domain 3  score: 17.4 bits;  conditional E-value: 2.5e-06
     DUF4231   31 lpilvssklgagvsvlkiltallsalvailaaleeffrykerWrryRstaEsLktekwlflakagpYs 98  
                  +pi++s +  ag +++ +++++l +l+a +  l + +r++e+W    ++a ++  + +++ +++  Y+
  KOO20935.1 1028 TPIAASNEVIAGMTWWGLSVVMLPVLSAGVGTLRTRMRPREKWASCLMAAHQVVDQIYKYRLRTDVYD 1095
                  788888888999*****************************************************997 PP

>> EF-hand_5  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.0   2.6e-05     0.046       8      21 ..    1195    1208 ..    1195    1211 .. 0.93

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 2.6e-05
                  H-SS-SSCE-HHHH CS
   EF-hand_5    8 iDlNgDGkIskeEL 21  
                  iD++gDGk+s  EL
  KOO20935.1 1195 IDMDGDGKVSTTEL 1208
                  8************9 PP

>> Methyltrans_SAM  S-adenosylmethionine-dependent methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0   2.6e-05     0.047     218     243 ..     985    1010 ..     975    1018 .. 0.88

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 2.6e-05
  Methyltrans_SAM  218 kkilrrlpellveggevlacvnspav 243 
                        ++lrrl  l+++ggev++cv +p +
       KOO20935.1  985 GRVLRRLQSLMCPGGEVFTCVADPPI 1010
                       589*********************88 PP

>> EF-hand_1  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   0.0    0.0003      0.53       9      25 ..    1195    1211 ..    1195    1214 .. 0.90

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.0003
                  HTTTSSSEEEHHHHHHH CS
   EF-hand_1    9 fDkDgdGkIdfeEfkel 25  
                  +D DgdGk++  E++++
  KOO20935.1 1195 IDMDGDGKVSTTELVAA 1211
                  69************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1311 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       582  (0.0324614); expected 358.6 (0.02)
Passed bias filter:                      440  (0.0245412); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.83u 0.31s 00:00:01.13 Elapsed: 00:00:00.47
# Mc/sec: 8308.08
//
Query:       KOO20936.1  [L=1203]
Description: cyclic nucleotide-binding protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    9.7e-20   70.8  14.6    2.6e-09   36.7   1.5    3.4  3  Ion_trans     Ion transport protein
    9.7e-19   67.1  20.0    3.6e-09   36.4   0.9    4.2  4  Ion_trans_2   Ion channel
      9e-15   54.5   0.4    1.1e-09   38.2   0.4    3.5  2  cNMP_binding  Cyclic nucleotide-binding domain
  ------ inclusion threshold ------
       0.15   12.1   0.0       0.45   10.6   0.0    1.8  1  Med26         TFIIS helical bundle-like domain


Domain annotation for each model (and alignments):
>> Ion_trans  Ion transport protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.0   0.2     7e-08   0.00031     165     235 ..      11      75 ..       5      84 .. 0.82
   2 !   21.5   1.4   2.5e-08   0.00011     111     244 ..     314     462 ..     185     463 .. 0.66
   3 !   36.7   1.5   5.7e-13   2.6e-09       2     235 ..     755    1018 ..     754    1022 .. 0.71

  Alignments for each domain:
  == domain 1  score: 20.0 bits;  conditional E-value: 7e-08
                 STSSSTTTSSSSSSHHHHHHHHHHHHTTSSHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
   Ion_trans 165 twenpnngntnFdnfftallwlfrlmttegwgdilyatldekskvaliyfvifiilgsflllNlliaviad 235
                 ++++p+++ + F +++ +l+w+++  +t g+gdi+++t+ e        +++++i ++ ll+  + + +++
  KOO20936.1  11 SDAYPDDQSNPFYSYLRSLYWMIVAVSTMGLGDIVPKTIAET------WVASIFITFGALLYPAFTGAMMS 75 
                 56788899999*******************************......77777777777776666666665 PP

  == domain 2  score: 21.5 bits;  conditional E-value: 2.5e-08
                 CHSHHHHH........HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCCCCSCCSTSSSTTTSSSSSS....................... CS
   Ion_trans 111 srleglrt........lvtalirsvkdllnvlllllvvlfifaligvqlfkgklreknecaktwenpnngntnFdn....................... 178
                 +++ ++++        + +  +r  + +l v++l+++ ++++a ig   f+ ++  +     t +   +                              
  KOO20936.1 314 RHTYNIEVwllnqspaMTMQHMRLGRLVLIVIMLSHLSACVWAYIGWREFDASFVTN-----TSAHTWQ------Ayswwardvvvlegaarcqplavl 401
                 44444444444444434445677778888899******************7777722.....2222222......123344468888888889989988 PP

                 .HHHHHHHHHHHHTTSSHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
   Ion_trans 179 .fftallwlfrlmttegwgdilyatldekskvaliyfvifiilgsflllNlliaviadnfqeltere 244
                   +  l+ ++ +   +  gd++++t+ e       y++if+i+++  l +  ++vi++++++l ++e
  KOO20936.1 402 aWLRGLYISIGTFVVVPIGDMVPDTMPET------YYMIFLIVAGSTLSSTGLGVIVNAIARLDQEE 462
                 89999999999******************......**************************999875 PP

  == domain 3  score: 36.7 bits;  conditional E-value: 5.7e-13
                  HHHHHHHHHHHHHHHHHHHC.CCSSSSHHHHC...HHHHHH.HHHHHHHHHHHHHHHHHHHTH................HHHHHHCHSHHHHHHHHH CS
   Ion_trans    2 svfelfilllillncvflal.etyfpedelek...tileil.elvftaiftlemllkilalgl................likkrYlrdpwnilDflv 77  
                  +++el++ l++ + ++ +++    f + ++      ++  +  + +++i + + ll+ +++++                 i+ +Y++    +lD+l+
  KOO20936.1  755 QLWELVMALTTAILATSIPFlIAVFGPRSPLSvanAWAALVpQWSIDVILLCDSLLRAYCFPFlppgretfmqselthmAIRTHYVQVK-LRLDLLA 850 
                  678888866664444444443344444333334544444445999*******************************************7.******* PP

                  HHHHHHHH.......HHHH..HHHHHHHHHHHHGGGGGGHHHCHSHHHHHHHH.HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCC...CC CS
   Ion_trans   78 vlpsllsl.......vlse..esllllsvlrlfrvlrllklisrleglrtlvt.alirsvkdllnvlllllvvlfifaligvqlfkgklrek...ne 161 
                   lp+ + +          +  + ll++++lrl r+lr  +++++++   +l+   l  s  +  + ++ +l+v +  + + + lf+     k   ++
  KOO20936.1  851 SLPYEALApiglavtS--DtkTILLAVALLRLPRLLRCSRILEHCRVAFALLPpQLHLSSGQARLAVVTCLWVYVCHGFACLWLFDAYALPKsalGR 945 
                  ******8887776542..1345566666666666666666666666654444434444555555555555555555555555666333333344411 PP

                  ....SCCSTSSSTTTSSS.SSSHHHHHHHHHHHHTTSSHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
   Ion_trans  162 ....caktwenpnngntn.FdnfftallwlfrlmttegwgdilyatldekskvaliyfvifiilgsflllNlliaviad 235 
                      +  +w++++  ++n   +++ a+ +++  m+t+g+gd+ +++  e       +f++++ l+s  l++ li++i++
  KOO20936.1  946 nwmtEDIAWKDADWAHSNvGLSYLRAVHFTLSHMSTVGLGDVRPQNALET------VFAMLLTLISASLFACLIGLISS 1018
                  4556677899998888885457****************************......********************987 PP

>> Ion_trans_2  Ion channel
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.4   0.9   8.1e-13   3.6e-09      20      77 ..      23      77 ..       5      79 .. 0.90
   2 ?   -2.8   0.1       1.5   6.6e+03      50      68 ..     337     355 ..     330     357 .. 0.77
   3 !   12.0   1.3   3.5e-05      0.16      21      77 ..     399     455 ..     370     457 .. 0.87
   4 !   30.4   0.7   6.1e-11   2.7e-07      22      77 ..     965    1020 ..     917    1021 .. 0.81

  Alignments for each domain:
  == domain 1  score: 36.4 bits;  conditional E-value: 8.1e-13
                 .T---HHHHHHHHHHHHTTS----SSTT-----HHHHHHHHHHHHHHHHHHHHHHHHH CS
  Ion_trans_2 20 wekwsfldalYfsfvtltTiGYGdivpetdagrlftivyillGlalfalflavlgkvl 77
                 +   s+l +lY+++v ++T G Gdivp+t a  +++ ++i++G +l+ +f+  + ++l
   KOO20936.1 23 Y---SYLRSLYWMIVAVSTMGLGDIVPKTIAETWVASIFITFGALLYPAFTGAMMSLL 77
                 4...99********************************************99988776 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 1.5
                  ---HHHHHHHHHHHHHHHH CS
  Ion_trans_2  50 agrlftivyillGlalfal 68 
                  +grl+ iv++l  l+ +++
   KOO20936.1 337 LGRLVLIVIMLSHLSACVW 355
                  5899999999988877766 PP

  == domain 3  score: 12.0 bits;  conditional E-value: 3.5e-05
                  T---HHHHHHHHHHHHTTS----SSTT-----HHHHHHHHHHHHHHHHHHHHHHHHH CS
  Ion_trans_2  21 ekwsfldalYfsfvtltTiGYGdivpetdagrlftivyillGlalfalflavlgkvl 77 
                  +   +l  lY s+ t+  +  Gd+vp+t    + +i++i+ G +l ++ l v+++++
   KOO20936.1 399 AVLAWLRGLYISIGTFVVVPIGDMVPDTMPETYYMIFLIVAGSTLSSTGLGVIVNAI 455
                  4567999********************99999******************9999887 PP

  == domain 4  score: 30.4 bits;  conditional E-value: 6.1e-11
                   ---HHHHHHHHHHHHTTS----SSTT-----HHHHHHHHHHHHHHHHHHHHHHHHH CS
  Ion_trans_2   22 kwsfldalYfsfvtltTiGYGdivpetdagrlftivyillGlalfalflavlgkvl 77  
                   + s+l a+ f++  ++T+G Gd+ p++++  +f+++++l+  +lfa+++ ++++++
   KOO20936.1  965 GLSYLRAVHFTLSHMSTVGLGDVRPQNALETVFAMLLTLISASLFACLIGLISSLV 1020
                   679**********************************************9998876 PP

>> cNMP_binding  Cyclic nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.2   0.4   2.4e-13   1.1e-09       5      86 ..     555     668 ..     552     670 .. 0.89
   2 !    9.2   0.0   0.00028       1.3       4      30 ..    1119    1145 ..    1116    1152 .. 0.89

  Alignments for each domain:
  == domain 1  score: 38.2 bits;  conditional E-value: 2.4e-13
                   -TT-EEE-TTSB-S.EEEEEEES-EEEE..............................EEETTS.EEEEEEE-TTEEESHHHHH.HTS--SSEEEES CS
  cNMP_binding   5 kagevifrqGdpad.slyivlsGevrvy..............................rlsedgkevvlavlgpGdlfGelall.tgeprtatvvAl 69 
                    + e +  +Gd+++  +yi+++G ++v                                  e+ k++v++++gpG+++Ge++++ +g+ r a+v+A+
    KOO20936.1 555 TPSELLMLEGDKGTqDMYIIVEGVFEVLtagrrpslsapvhrrrkaealmgekmgfakDHFEQTKSTVVGTVGPGAVLGEVSFFlQGTARNASVRAV 651
                   57789999****755************9999999999999999999988888888887666777889*****************98899******** PP

                   STEEEEEEEHHHHHHHH CS
  cNMP_binding  70 tdsellalprddflell 86 
                   t++++l+l+r ++++++
    KOO20936.1 652 TRAVVLQLTRTQLDAAC 668
                   ************99876 PP

  == domain 2  score: 9.2 bits;  conditional E-value: 0.00028
                    E-TT-EEE-TTSB-SEEEEEEES-EEE CS
  cNMP_binding    4 fkagevifrqGdpadslyivlsGevrv 30  
                    f  g++++++Gdpa +ly+v  G++r 
    KOO20936.1 1119 FLEGDTVITKGDPAVKLYLVDLGKLRA 1145
                    678********************9996 PP

>> Med26  TFIIS helical bundle-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0    0.0001      0.45      15      38 ..     442     468 ..     437     476 .. 0.74

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.0001
                 HHHHHSHHHHHHHHHH...-TTS-HHH CS
       Med26  15 tLkstgIGkvVnalrk...hkhetaev 38 
                 tL stg+G++Vna+++   ++ e+a v
  KOO20936.1 442 TLSSTGLGVIVNAIARldqEEYEHAMV 468
                 89************9633344445555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1203 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       549  (0.0306208); expected 358.6 (0.02)
Passed bias filter:                      360  (0.0200792); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.79u 0.25s 00:00:01.04 Elapsed: 00:00:00.46
# Mc/sec: 7777.29
//
Query:       KOO20937.1  [L=397]
Description: purple acid phosphatase 22-like protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.1e-16   62.0   0.1    1.3e-14   55.2   0.0    2.7  2  Metallophos    Calcineurin-like phosphoesterase
    3.7e-13   50.1   0.7    3.1e-12   47.2   0.4    2.5  2  Metallophos_C  Iron/zinc purple acid phosphatase-like protein
    0.00016   21.9   0.0    0.00024   21.3   0.0    1.2  1  Metallophos_2  Calcineurin-like phosphoesterase superfamily d
  ------ inclusion threshold ------
       0.02   14.4   0.3      0.052   13.0   0.2    1.5  1  PGA_cap        Bacterial capsule synthesis protein PGA_cap


Domain annotation for each model (and alignments):
>> Metallophos  Calcineurin-like phosphoesterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.2   0.0   2.8e-18   1.3e-14       2     204 .]      51     213 ..      50     213 .. 0.78
   2 ?   -1.4   0.0      0.62   2.8e+03      72      92 ..     238     267 ..     222     326 .. 0.65

  Alignments for each domain:
  == domain 1  score: 55.2 bits;  conditional E-value: 2.8e-18
                  EEEEEESBTBTTCCTHHHHHHHHHHHHHHHTTESEEEEEST..SSSSS..HHHHHHHHHHHHHHHHTSEEEEEC-TTSCHHHHHHHHHHHHHHHHHHH CS
  Metallophos   2 rilvigDlHlalgggqlddllkllddllreekpdlvllaGD..lvdrg..dlekellellaalvkypipvylllGNHegfeeellnkygylgifsepw 95 
                  ++ +++Dl+   +    ++ ++ll++ ++  ++ +vllaGD  + d+    +++ + +++++l +  +pv++++GNHe                    
   KOO20937.1  51 SVGLTADLG---QTRASRANVELLRRRAETVGVGVVLLAGDlsYADGWlpRWDT-YGRMMEPLAAA-VPVMTTAGNHE-------------------L 124
                  677888888...6666666777776666778999*******6666665******.*********95.***********...................2 PP

                  EHHHCEEETSEEEEEETTEEEEEEEESECEEETHHHHHHHHHHHSCHHHHCC.HHHHHH...HHHHTTCSEEEEEESSESSCSSSCSCCHHHHH.... CS
  Metallophos  96 rsdaevfnnlplaslgsgslkvlllhGgspellvsldklgslnleleapepg.dewlkd...lekrekadwvivlgHsplyrgsgylfgdeale.... 185
                   sd++ +  + l+s      +  +++G                          + wl++     +r+ ++wviv+ H p+y+ ++ ++g+ +l+    
   KOO20937.1 125 GSDVGPVHLISLCS------YAATAPGS-----------------------LqHRWLRRdlaRIDRSMTPWVIVMMHAPWYNTNSGHKGEAELMrqhm 193
                  22233336666666......55556666.......................1288999999999*****************66666666666666999 PP

                  HH.HHHTTESEEEEESSSSE CS
  Metallophos 186 dl.lkkygvdlvisGHtHvy 204
                  +  l++ gvdlv+sGH+H y
   KOO20937.1 194 EAdLYEAGVDLVLSGHVHAY 213
                  8889**************86 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 0.62
                  -TTSCHHHHHHHHHHHHHHH.........H CS
  Metallophos  72 GNHegfeeellnkygylgif.........s 92 
                  GN eg ++ +l++++++  f          
   KOO20937.1 238 GNYEGAYMPWLPSQPSWSAFrqatfgvglL 267
                  888877778888888887775433333222 PP

>> Metallophos_C  Iron/zinc purple acid phosphatase-like protein C
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.2   0.4   6.8e-16   3.1e-12       1      56 [.     228     283 ..     228     293 .. 0.91
   2 ?   -0.3   0.0      0.45     2e+03      28      42 ..     343     357 ..     325     359 .. 0.77

  Alignments for each domain:
  == domain 1  score: 47.2 bits;  conditional E-value: 6.8e-16
  Metallophos_C   1 ApvhiviGaAGndegdafkgeppqpewsafrstdyGygrltvhNathLlwefvrss 56 
                    +pv++  G++Gn+eg  + + p qp+wsafr+  +G g lt++N++h+ + + rss
     KOO20937.1 228 GPVYLNLGDGGNYEGAYMPWLPSQPSWSAFRQATFGVGLLTIVNQSHAWYNWSRSS 283
                    8**************87888899****************************99985 PP

  == domain 2  score: -0.3 bits;  conditional E-value: 0.45
  Metallophos_C  28 safrstdyGygrltv 42 
                      + +t +G+grl +
     KOO20937.1 343 EQYNATIHGHGRLIF 357
                    5677899*****976 PP

>> Metallophos_2  Calcineurin-like phosphoesterase superfamily domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.3   0.0   5.3e-08   0.00024      10     131 ..      62     214 ..      51     238 .. 0.67

  Alignments for each domain:
  == domain 1  score: 21.3 bits;  conditional E-value: 5.3e-08
  Metallophos_2  10 HsnldaleavlealkevgvdaiihaGDl.eeeep........evleellelapvlaVrGNnD..............eevveedvlreaaelgtdlp 82 
                    +++++ +e + ++++ vgv  +++aGDl ++            ++e l +  pv +  GN++              ++++    + +   l++dl 
     KOO20937.1  62 RASRANVELLRRRAETVGVGVVLLAGDLsYADGWlprwdtygRMMEPLAAAVPVMTTAGNHElgsdvgpvhlislcSYAATAPGSLQHRWLRRDL- 156
                    456666777788889999*********8533322567776656888888888************9887554443322222222222222222222. PP

  Metallophos_2  83 eeaelelagekvlliHgdpl............gvkdalaellkeaeegsdvvvcGHtHvpe 131
                    ++ + ++  + + ++H   +              +++++++l+e  +g+d+v++GH H  e
     KOO20937.1 157 ARIDRSMTPWVIVMMHAP-WyntnsghkgeaeLMRQHMEADLYE--AGVDLVLSGHVHAYE 214
                    44444446666*****98.559**88876555555555555555..8899********874 PP

>> PGA_cap  Bacterial capsule synthesis protein PGA_cap
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.2   1.2e-05     0.052     178     236 ..     150     214 ..     138     236 .. 0.71

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 1.2e-05
     PGA_cap 178 eklladirear.keadlvivslHw...geeyqek..padeqrelaralidaGadvviGhhpHvlq 236
                 + l++d+++++      viv++H+    ++ ++k   +   +++  +l +aG+d+v+  h H  +
  KOO20937.1 150 RWLRRDLARIDrSMTPWVIVMMHApwyNTNSGHKgeAELMRQHMEADLYEAGVDLVLSGHVHAYE 214
                 5577888888866789********633233333311444455566678888***********876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (397 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       408  (0.0227564); expected 358.6 (0.02)
Passed bias filter:                      364  (0.0203023); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.48u 0.27s 00:00:00.75 Elapsed: 00:00:00.41
# Mc/sec: 2900.09
//
Query:       KOO20938.1  [L=924]
Description: major facilitator superfamily 12 transmembrane domain [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.5e-42  145.8   0.4    7.3e-42  143.6   0.0    2.1  3  Pkinase         Protein kinase domain
    9.6e-25   87.2  25.9    9.6e-25   87.2  25.9    2.4  2  MFS_1           Major Facilitator Superfamily
    7.5e-18   64.1   1.1      2e-15   56.1   0.0    2.2  2  OATP            Organic Anion Transporter Polypeptide (OATP) 
    6.6e-16   58.4   0.0    1.1e-15   57.7   0.0    1.3  1  Pkinase_Tyr     Protein tyrosine kinase
    4.7e-11   42.2   4.3    4.7e-11   42.2   4.3    3.0  2  Sugar_tr        Sugar (and other) transporter
  ------ inclusion threshold ------
       0.13   11.6   0.3       0.23   10.8   0.3    1.3  1  Kdo             Lipopolysaccharide kinase (Kdo/WaaP) family


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.3   0.0       3.1   9.3e+03      20      39 ..      14      33 ..       4      41 .. 0.65
   2 !  143.6   0.0   2.4e-45   7.3e-42       1     212 [.      68     304 ..      68     312 .. 0.90
   3 ?   -0.4   0.0      0.21   6.1e+02     176     198 ..     735     757 ..     710     762 .. 0.72

  Alignments for each domain:
  == domain 1  score: -4.3 bits;  conditional E-value: 3.1
                ETTTTEEEEEEEEECHCHCH CS
     Pkinase 20 eketgkivAvKkikkekakk 39
                +++   + A+Kk +k+++  
  KOO20938.1 14 HRAAALKAAMKKAEKDQNAR 33
                55556667777777766654 PP

  == domain 2  score: 143.6 bits;  conditional E-value: 2.4e-45
                 EEEEEEEEEESSEEEEEEEETTTTEEEEEEEEECHCHCHHHH.HHHHHHHHHHHHHS...CTTB--EEEEEEE.SSEEEEEEE--TTEBHHHHHHHHSS CS
     Pkinase   1 yekleklGeGsfGkVykaveketgkivAvKkikkekakkkke.kkvlrEikilkklk...hpnivrlyevfee.kdelylvleyveggeladllerkgs 94 
                 y+++ klGeG+fG+V k+ + ++gk++A K++ +++ ++ ++ k+ + E+++   ++   hp i++l+ev++  + +++lv+e+++ ++la +   +  
  KOO20938.1  68 YRVIDKLGEGAFGVVSKVQKVTDGKEYAAKEVLRSRCQHAQQwKASVDEMTLWSIISspyHPSILQLIEVVYLeDVSFHLVTEVMK-DDLAGAFG-HFE 164
                 67899****************************9999998888*******9998888888*********9886266889******9.55999995.799 PP

                 --HHHHHHHHHHHHHHHHHHH.HTTEE-SS-SGGGEEEETTTE......EEE-SGTTSEESSSSCS...BCTTTSCGGGS-HHHH............TT CS
     Pkinase  95 lseeeakkiakqilegleylH.skgiiHrDlKpeNiLidekge......lKitDFGlakelesssk...ltsfvgtseYlAPEvl............ke 171
                 +se++a+ i+ q+++++++lH ++++ HrD+KpeN+L+ ++ +      lK++DFG++++++ + k   ++ + g+ +Y APE+             ++
  KOO20938.1 165 MSEQNARMITVQLAAAIAHLHkNHSMAHRDIKPENVLCRRRHNpmlvgsLKLADFGFCAKFSGGPKepcFSLYAGSVDYFAPELAqivravrkrqsqQG 263
                 *********************55669*************6655789999**************999999**************9888999999887666 PP

                 SCBSHHHHHHHHHHHHHHHHHSS-STTTSSHHHHHHHHHHT CS
     Pkinase 172 neyskkvDvWslGvilyelltgkppfsgekgkekvekeldq 212
                  +y++ vD ++lG++++e+++g++p +  ++++++ek+++ 
  KOO20938.1 264 MKYGAGVDCYALGCVVFEMFNGSTPHYFPDENKQIEKIIKG 304
                 899**********************9988888888877765 PP

  == domain 3  score: -0.4 bits;  conditional E-value: 0.21
                 HHHHHHHHHHHHHHHHHSS-STT CS
     Pkinase 176 kkvDvWslGvilyelltgkppfs 198
                 ++  +W +G+i+++l++g  + +
  KOO20938.1 735 TAGFWWCIGLIFITLVFGGAIIP 757
                 45559***********9987766 PP

>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   87.2  25.9   3.2e-28   9.6e-25      15     353 .]     324     792 ..     312     792 .. 0.80
   2 !    8.6  11.3   0.00026      0.76      83     148 ..     736     802 ..     714     894 .. 0.84

  Alignments for each domain:
  == domain 1  score: 87.2 bits;  conditional E-value: 3.2e-28
       MFS_1  15 lgpalplalaedlgispseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalg.lllllfasslwlllvlrvlqGlgagalfpagaaliad 112
                 + pa  l+++ ++ +  se+gll+ l++ g a++ l +G+ +  +++ r+  l+++l +++ +l+++ a+s+ +ll++r+l G+ +++ +    +++ +
  KOO20938.1 324 AVPAGLLHIGATFDMGTSELGLLAMLVYQGVALGCLTVGPATRYMSPLRFTQLTMALNIACtCLFGA-AQSMGMLLAFRLLIGFLQAMPAVYFPVWVDE 421
                 445555599*********************************99*****************344444.46666*************9999999999999 PP

       MFS_1 113 wfpkeergraigllsagfslGailgpllggllasslg...................Wravfyilaivsllafvlfllll................peep 176
                  +p +  ++ ++l++ag  lG+ +g++++g+++ s+                    Wr++fy+  ++++++f   ++ll                +   
  KOO20938.1 422 FAPADAVTFWMALINAGGPLGITIGYVFSGAMT-SGEldptseafvpcatsdvscaWRVPFYLQSGALVMLFF--GMLLipkslfdlgqdkppaeT--- 514
                 9999*****************************.33367*******************************955..444448888888554444430... PP

       MFS_1 177 perkrkspkeee.............................................................kgtgpaplvp........awkallkd 206
                      k+p+                                                                 g++pa+ +p        ++ +l+ +
  KOO20938.1 515 -----KEPANAPvaapgqsprresagmpspspdrspgnspkttpdlapkttpmtsvdqseaptslsvaevdeeRGDAPAGTTPkttpkkrnLICELFGN 608
                 .....333333355666667777788888888889999999999999************99999***99999955555555554445555644444444 PP

       MFS_1 207 pvlwillialllfffgfsglltllplylqevlglsglllaglllallalvgailallagrls.drlgr...rrrlllallllllaalglallavt.... 297
                  +  + +++l + ff+++g+ +++++y++ v g s   +++ +++++++ + i++++ag +  d++g    + ++ l+l +++++a++ a +a t    
  KOO20938.1 609 GPYIFTVMGLSSLFFVVTGVQVWVTSYIVVVIGKS-QAEVTPAFGVTSITAPIIGVIAGGIFiDKIGGykgEAAMALTLKICFAFACLAATFAITcayv 706
                 4443699999999**********************.7999999*******9999888888888**6665444455555444444444444444446778 PP

       MFS_1 298 ............................ssavllllvlvliGf.glgfvfpsllalasdlappeeagtasglfntags.lggalgp 353
                                             +  +++ ++l++i++ ++g + p+++ ++++ +pp+++   s+l +++++ +g a++p
  KOO20938.1 707 pkavadqgvscitntsspfyvapddaraTAGFWWCIGLIFITLvFGGAIIPAAMGCLVSAVPPDMRSVGSALSMFCFQqFGYAFSP 792
                 88889*********99999999999985444444448888999888888*************************666659999987 PP

  == domain 2  score: 8.6 bits;  conditional E-value: 0.00026
       MFS_1  83 sslwlllvlrvlqGlgagalfpagaaliadwfpkeergraigllsa.gfslGailgpllggllassl 148
                 +++w+ + l +++ +++ga++pa++  ++  +p++ r+ + +l +  + ++G+++ pl+++l+ +++
  KOO20938.1 736 AGFWWCIGLIFITLVFGGAIIPAAMGCLVSAVPPDMRSVGSALSMFcFQQFGYAFSPLASALIGDLA 802
                 88999*****************************99999999988857789********99998765 PP

>> OATP  Organic Anion Transporter Polypeptide (OATP) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.1   0.0   6.7e-19     2e-15     140     393 ..     402     708 ..     389     723 .. 0.73
   2 !    4.1   2.2    0.0037        11     460     520 ..     738     798 ..     717     803 .. 0.80

  Alignments for each domain:
  == domain 1  score: 56.1 bits;  conditional E-value: 6.7e-19
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        OATP 140 lllGiGatpiytlGisYidDnvkkknsplylgilyalrilGpalGfllGslllklyvdidseisltpkdprWvgaWWlgflilgvllllaaiplffFPk 238
                 ll+G+ +++       ++d+++     ++ ++++ a   lG  +G+++++++++   d++se  +    +    aW + f + + +l+++ + +++ Pk
  KOO20938.1 402 LLIGFLQAMPAVYFPVWVDEFAPADAVTFWMALINAGGPLGITIGYVFSGAMTSGELDPTSEAFVPCATSDVSCAWRVPFYLQSGALVMLFFGMLLIPK 500
                 555555555555556789*****************************************87777666889999************************** PP

                 x...xxxxxxxxxxxxxxxxxx...........x.....xxxxxxxxxxxxxxx.......................................x..... RF
        OATP 239 e...lpkkkeerakkkseeesa...........e.....kkeekkkkeksksse.......................................e..... 274
                 +   l ++ +  a++k+  ++a           e     +             +                                       +     
  KOO20938.1 501 SlfdL-GQDKPPAETKEP-ANApvaapgqsprrEsagmpS------------PSpdrspgnspkttpdlapkttpmtsvdqseaptslsvaevDeergd 585
                 *6542.222222222222.222344444433330232220............22223333333333444444444444444444444444333034444 PP

                 ....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        OATP 275 ....eelkslkdfpkalkrllknpifllvilssvfeillvaGfitFlpkylEtqFslsaseAnlltGvvvipgaalGillgGllvkklklsakklaklv 369
                     ++ k++ +  + +++l+ n  +++++++  + +++v+G+ ++++ y+ +  ++s++e +  +Gv++i + ++G+++gG+ + k+     ++a+  
  KOO20938.1 586 apagTTPKTTPKKRNLICELFGNGPYIFTVMGLSSLFFVVTGVQVWVTSYIVVVIGKSQAEVTPAFGVTSITAPIIGVIAGGIFIDKIGGYKGEAAMAL 684
                 44554444444445566***********************************************************************98888888888 PP

                 xxxxxxxxxxxxxxxxxxxxxxxx RF
        OATP 370 lvvsllsllllllllflgCetskv 393
                 ++  ++++++l++ ++++C   + 
  KOO20938.1 685 TLKICFAFACLAATFAITCAYVPK 708
                 88888999999999999**87665 PP

  == domain 2  score: 4.1 bits;  conditional E-value: 0.0037
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        OATP 460 lllflillflvsflgalgrvpallvilRcVkkedksfalGlqlllirllgliPgPiifGai 520
                 +++ + l+f++ ++g     +a+  ++  V+++ +s+  +l++++++ +g+  +P+    i
  KOO20938.1 738 FWWCIGLIFITLVFGGAIIPAAMGCLVSAVPPDMRSVGSALSMFCFQQFGYAFSPLASALI 798
                 566666677776666665555555999****************************876555 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.7   0.0   3.6e-19   1.1e-15       3     221 ..      70     305 ..      68     313 .. 0.79

  Alignments for each domain:
  == domain 1  score: 57.7 bits;  conditional E-value: 3.6e-19
                  EEEEEEEESSEEEEEEEEETTTTSSEEEEEEEE.ESTTSSHHHHHHHHHHHHHHHTS-BTTB--EEEEEE.SSSSEEEEEE--TTEBHHHHHHHTCTT CS
  Pkinase_Tyr   3 lgkklGeGafGkVvegtlkgekekkevkVavKt.lkeeateeekeelleeakimkklkhpnivkllgvct.keepllivteyvkgGdLlkfLrkkeke 98 
                  + +klGeGafG V + +  ++ ++   k ++++ +++ ++ + + + ++  +i+++  hp i++l+ v++ ++ +  +vte +k  dL     +    
   KOO20938.1  70 VIDKLGEGAFGVVSKVQKVTDGKEYAAKEVLRSrCQHAQQWKASVDEMTLWSIISSPYHPSILQLIEVVYlEDVSFHLVTEVMKD-DLAGAFGHF--- 163
                  5689***********9988644443333333330344444444556666677888889***********978888*******987.666666555... PP

                  TSBHHHHHHHHHHHHHHHHHHHHTT.EEEST-SGGGEEEEE......TTEEEE-STTTHEETTTSSEEEETTSSTSGGGGS-HHHHHHSE........ CS
  Pkinase_Tyr  99 kltlkdllsfalqvAkGmeyLeskk.lvHrdlaarNvLlse......nkvvkisDfGLardiekddeyvkkeeaklpvkWmapEslkekk........ 181
                  +++ ++   +++q+A+++++L++++ + Hrd+   NvL ++          k++DfG + + +   +    +    +v + apE  +  +        
   KOO20938.1 164 EMSEQNARMITVQLAAAIAHLHKNHsMAHRDIKPENVLCRRrhnpmlVGSLKLADFGFCAKFSGGPKEPCFSLYAGSVDYFAPELAQIVRavrkrqsq 261
                  6888999999************987589************97777766789***********99999999999***********98876667788899 PP

                  ....EEHHHHHHHHHHHHHHHHTTSSGTTTTS.HHHHHHHHHHTT CS
  Pkinase_Tyr 182 ....ftsksDvWsfGvllwEiftlgespypgl.kneevleklkeg 221
                      +    D ++ G +++E+f+ g++p+    +n+++ + +k g
   KOO20938.1 262 qgmkYGAGVDCYALGCVVFEMFN-GSTPHYFPdENKQIEKIIKGG 305
                  99999999***************.666655552566655555554 PP

>> Sugar_tr  Sugar (and other) transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.2   4.3   1.6e-14   4.7e-11      45     194 ..     340     501 ..     264     516 .. 0.87
   2 ?  -10.3  14.8         6   1.8e+04      60     118 ..     660     717 ..     590     794 .. 0.56

  Alignments for each domain:
  == domain 1  score: 42.2 bits;  conditional E-value: 1.6e-14
                 ..HHHHHHHTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH-TTTTSS-TGGGGGHHHHHHHHHHHHHHHHHHHHTTS-SCCHHHHHHHH CS
    Sugar_tr  45 svlsglivsiflvGaiiGslfagllgdrfGRkkslliaavlfvigavlqaaakgknsvevlivgRvlvGigvGlasvlvPmyisEiApkklRgalvsly 143
                 ++ +gl++ +++ G ++G+l++g+++ +++       + +l +++++l +aa+   s+ +l++ R+l+G+   +  v  P++++E+Ap++   + + l 
  KOO20938.1 340 TSELGLLAMLVYQGVALGCLTVGPATRYMSPLRFTQLTMALNIACTCLFGAAQ---SMGMLLAFRLLIGFLQAMPAVYFPVWVDEFAPADAVTFWMALI 435
                 678999999**********************999999****************...**********************************988888888 PP

                 HHHHHHHHHHHHHHHHHHHTSS-...............TTHHHHHHHCCHHHHHHHHHHGGGS--- CS
    Sugar_tr 144 qlaitfGilvaaifglglnktsn...............adgwrillglqlvpallllilllflPES 194
                 + +  +Gi ++++f  ++   +                +  wr++++lq+   ++l++++l++P S
  KOO20938.1 436 NAGGPLGITIGYVFSGAMTSGELdptseafvpcatsdvSCAWRVPFYLQSGALVMLFFGMLLIPKS 501
                 8777777777777766654444378899**********99************************99 PP

  == domain 2  score: -10.3 bits;  conditional E-value: 6
                 HHHHHHHHHHHHHT.THHHHHHHHHHHHHHHHHHHH-TTTTSS-TGGGGGHHHHHHHHHH CS
    Sugar_tr  60 iiGslfagllgdrf.GRkkslliaavlfvigavlqaaakgknsvevlivgRvlvGigvGl 118
                 iiG + +g+++d++ G+k   ++a +l +  a+ + aa+  +++   +v + ++  gv +
  KOO20938.1 660 IIGVIAGGIFIDKIgGYKGEAAMALTLKICFAFACLAAT--FAITCAYVPKAVADQGVSC 717
                 222222222222221233333333333333333333333..3333333334444444444 PP

>> Kdo  Lipopolysaccharide kinase (Kdo/WaaP) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.3   7.6e-05      0.23     112     155 ..     162     206 ..     145     222 .. 0.81

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 7.6e-05
         Kdo 112 waelaeelkrallkavgrliaklhrag.vnHadlyaknillqqee 155
                 + e++e+  r++  +++++ia lh+ + + H+d+ + n+l + ++
  KOO20938.1 162 HFEMSEQNARMITVQLAAAIAHLHKNHsMAHRDIKPENVLCRRRH 206
                 3558899999**************987367**********99876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (924 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       660  (0.0368119); expected 358.6 (0.02)
Passed bias filter:                      429  (0.0239277); expected 358.6 (0.02)
Passed Vit filter:                        47  (0.00262145); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.77u 0.26s 00:00:01.03 Elapsed: 00:00:00.41
# Mc/sec: 6757.67
//
Query:       KOO20939.1  [L=739]
Description: folic acid synthesis protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
      6e-71  239.0   0.1      1e-44  153.1   0.0    2.2  2  Pterin_bind  Pterin binding enzyme
      8e-35  119.7   0.0    1.5e-34  118.8   0.0    1.5  1  HPPK         7,8-dihydro-6-hydroxymethylpterin-pyrophosphokin
    2.2e-20   73.3   0.0      4e-20   72.4   0.0    1.4  1  FolB         Dihydroneopterin aldolase


Domain annotation for each model (and alignments):
>> Pterin_bind  Pterin binding enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   83.8   0.2   2.5e-27   1.5e-23       1      71 [.     422     494 ..     422     499 .. 0.95
   2 !  153.1   0.0   1.7e-48     1e-44      73     244 .]     520     706 ..     514     706 .. 0.95

  Alignments for each domain:
  == domain 1  score: 83.8 bits;  conditional E-value: 2.5e-27
                  EEEEETTTTTCHCCHHC..THHHHHHHHHHHHHHTT-SEEEEESS-TSTT--CCHHHHHHHHHHHHHHHHHHH CS
  Pterin_bind   1 mgilNvtpdsfsdggkf..edldkalaqarkmveeGAdilDiggestrPgaervdeeeelervvpvlealrde 71 
                  m+ilN+tpdsfsdgg+    d+ +a+a+a+++ve+GAd++D+g+estrPgaerv e ee++r++pv++a+rd 
   KOO20939.1 422 MAILNLTPDSFSDGGRAldTDVHAAVAEAKALVEAGADVVDLGAESTRPGAERVTEHEEMRRLLPVIRAIRDA 494
                  89**************9778899***********************************************996 PP

  == domain 2  score: 153.1 bits;  conditional E-value: 1.7e-48
                  TSEEEEE-S-HHHHHHHHHTTSEEEEETTTTSSSTTHHHHHHHHT-EEEEESECSSTTTHCCCC.CCCSSHHHHHHHHHHHHHHHHHHTT--GGGEEE CS
  Pterin_bind  73 dvpisiDttkaevaeaAlkagadivNdvsgeerdpkmlelvaeagaavvvmhmrgtpktmqeee.gqyedvveeveaflearveaaeeaGvaperill 169
                  +v +s+Dtt+a+va aA++agadi+Nd+sg++ d+ m+++va  g+++++mh+rgtpktm+  +     +v   v  +le+ v+aa +aG+ap+ ++ 
   KOO20939.1 520 RVVLSVDTTRASVAAAAVAAGADIINDISGGTFDEGMVKTVATLGVPYIAMHTRGTPKTMRSLAsYPGGQVTSIVCDELERVVRAAHAAGLAPWSLIA 617
                  789*************************************************************88888899999999******************** PP

                  ETTTTSSTTHHHHHHHHHTHHHHHHTTS...............SEBEEEGTTGHHHHHHHCTTCHGHHHHHHHHHHHHHHHTT-SEEEES CS
  Pterin_bind 170 Dpgigfgkteehnlellrrldelreale...............vpvllGvSrksflgrllelgkaeeRdagtaaflalaaaaGadivrVh 244
                  Dpgigf+k++++++ ll++l+++ ++                 +  l+G+Srk f+g++l+  ++ +R++g+aa++++a  aG+divrVh
   KOO20939.1 618 DPGIGFAKDPQQSMTLLHELPAFVQR-IvgaqpgggggggggcCASLVGASRKGFIGQVLSQPDPLQRQWGNAATTVAATVAGVDIVRVH 706
                  ***********************444.34799**************************9955559************************9 PP

>> HPPK  7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  118.8   0.0   2.5e-38   1.5e-34       1     112 []     239     371 ..     239     371 .. 0.95

  Alignments for each domain:
  == domain 1  score: 118.8 bits;  conditional E-value: 2.5e-38
                 EEEEEE-SSSHHHHHHHHHHHHHH...EEEEE---EEE--S...SS-GEEEEEEEEEESS-HHHHHHHHHHHHHHTT--C...STS-BS-EEEEEEET. CS
        HPPK   1 ylalGsNlgdreanleealealee...kvvkvSslyetepv...dqpdFlNavvevetelspeellealkeiEkelgrer...rwgpRtlDlDillyg. 89 
                 y+alGsNlgdr+a+ ++al++l++   +v++vS+ly t+p    +qpdFlNa++e++t+lsp++ll alk iE++lgr++   r+gpR++DlD+llyg 
  KOO20939.1 239 YIALGSNLGDRAAHATSALRELRTrcgEVTRVSQLYVTAPQhviEQPDFLNAACELRTALSPAALLVALKGIERDLGRSSggvRYGPRVIDLDLLLYGd 337
                 89********************77677899***********8888*********************************965667*************** PP

                 ...........EEES-TTGGG-HHHHHHHHHHCT CS
        HPPK  90 ...........ltlPhprlaeraFvlvplaelap 112
                            l++Ph+ l +r+Fvl+pl+++ap
  KOO20939.1 338 rvvecdtsegpLSVPHKLLLQRTFVLAPLCDVAP 371
                 *******************************987 PP

>> FolB  Dihydroneopterin aldolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   72.4   0.0   6.7e-24     4e-20       1     107 [.      10     122 ..      10     126 .. 0.90

  Alignments for each domain:
  == domain 1  score: 72.4 bits;  conditional E-value: 6.7e-24
                 EEEEEEEEEEEESSSHHHHHC-EEEEEEEEEEE-CHHHHHHTTGGGSS-HHHHHHHHHHHHHSSEES-HHHHHHHHHHHHH.......CHST..ESEEE CS
        FolB   1 ieikglrvpaiiGvnpeErelkQrvvvdleleldlskaaesddledtvdYaelakavkelvesssfkllEalaeriaeall.......eefp..vekve 90 
                 iei++lrv++i+G+ + E++  Q++++d++l+l l+  a++ dl+ +v+Y +++k++  ++++ ++ llE+la+++a+++l          +  v++ve
  KOO20939.1  10 IEINDLRVDCIVGIREREQRSLQPLIIDARLSLPLDGPANTGDLTTSVNYSAISKQLAFVAAHGQWGLLESLASALASHILlppagaeG--RaqVRAVE 106
                 79********************************************************999999*****************99999753..235***** PP

                 EEEEETTSSSTC.ESEEE CS
        FolB  91 vrveKpnapiga.adavg 107
                 vr++Kp+a+  + ++ ++
  KOO20939.1 107 VRIRKPDAL--KgLAVPA 122
                 ********5..2245444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (739 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       375  (0.0209158); expected 358.6 (0.02)
Passed bias filter:                      251  (0.0139997); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.60u 0.27s 00:00:00.87 Elapsed: 00:00:00.46
# Mc/sec: 4829.85
//
Query:       KOO20940.1  [L=192]
Description: hypothetical protein Ctob_000432 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.047   13.8   0.4      0.088   13.0   0.4    1.4  1  TetR_C_35  Bacterial Tetracyclin repressor,  C-terminal domai


Domain annotation for each model (and alignments):
>> TetR_C_35  Bacterial Tetracyclin repressor,  C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.4   4.9e-06     0.088       3      78 ..      14      91 ..      13      95 .. 0.92

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 4.9e-06
   TetR_C_35  3 raairaavrafleeaaadpLvravltge..akedLlpllTtdseplleaAsarlaevlaeswpqldeadaevladavv 78
                ++a+ +avr+f + ++++ +vr  ++g       L++l+T    ++ ++A+   a++l +   q ++++ ++++d+++
  KOO20940.1 14 AEAVSNAVRTFWNLSHSSDVVRHAMAGIdgPIAALVRLVTGSNPQIASKAAIGAASLLSTLIHQSEDEAKRAIIDTII 91
                589********************99999676789*******99999999**999****99999999999999999986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (192 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       391  (0.0218082); expected 358.6 (0.02)
Passed bias filter:                      350  (0.0195214); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.23s 00:00:00.62 Elapsed: 00:00:00.38
# Mc/sec: 1512.36
//
Query:       KOO20941.1  [L=591]
Description: hypothetical protein Ctob_002174 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
  ------ inclusion threshold ------
        5.3    6.8   8.1        2.8    7.7   5.7    1.7  1  Sec5          Exocyst complex component Sec5


Domain annotation for each model (and alignments):
>> Sec5  Exocyst complex component Sec5
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.7   5.7   0.00015       2.8      32     175 ..     269     423 ..     261     439 .. 0.85

  Alignments for each domain:
  == domain 1  score: 7.7 bits;  conditional E-value: 0.00015
        Sec5  32 skteaqedslveeLeeslneairkttllfkpvlenkekadklraaleviernkflFnLPksLkesiakgdydklindYkkakslfestrqslv...... 124
                 sk +aq++ l   L   l+ a++++t+  + +  ++ ++++l+  ++v     ++++L k+L e+ ++ d d + + Y+k k  + +  +         
  KOO20941.1 269 SKMAAQQEALATALLIDLDHAEMEHTRHARTLQ-EALESKELQRLTAVRRLDAEVLQLTKELAEARQRSDEDAA-QWYQKEKAYVAEASAMRSkltkve 365
                 566788888999999999999999999987765.555689999999******************9999998765.679888888877743333788999 PP

        Sec5 125 .......eedkkqvkvfkkvwsevekiieeyrkklwekLleldesqeeflkliskLle 175
                        +e + q++vf+ + +e  ++ +e+r+ + ++  + +++ e+ +  ++ Ll+
  KOO20941.1 366 aelrqsrDETSDQKTVFEAMVAELRQTLSELRTAMGDDAAKAQSQIEQLKGQLEVLLR 423
                 999999999999*************************999999999999999998886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (591 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2001  (0.111607); expected 358.6 (0.02)
Passed bias filter:                      472  (0.0263261); expected 358.6 (0.02)
Passed Vit filter:                        74  (0.00412739); expected 17.9 (0.001)
Passed Fwd filter:                        24  (0.00133861); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.86u 0.31s 00:00:01.17 Elapsed: 00:00:00.48
# Mc/sec: 3729.99
//
Query:       KOO20942.1  [L=755]
Description: acid trehalase-like protein 1 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.5e-49  168.1   0.0    5.4e-43  147.3   0.1    2.2  2  Glyco_hydro_65m  Glycosyl hydrolase family 65 central catalyt
    8.8e-06   24.3   0.0       0.11   10.8   0.0    2.7  2  DUF2152          Uncharacterized conserved protein (DUF2152)


Domain annotation for each model (and alignments):
>> Glyco_hydro_65m  Glycosyl hydrolase family 65 central catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  147.3   0.1   6.1e-47   5.4e-43       4     208 ..     318     512 ..     315     542 .. 0.92
   2 !   18.7   0.0   6.8e-08   0.00061     281     386 ..     546     657 ..     534     658 .. 0.83

  Alignments for each domain:
  == domain 1  score: 147.3 bits;  conditional E-value: 6.1e-47
  Glyco_hydro_65m   4 lfhllqtlaaadarldvgakGltGegYrGhvfWDtElfvlPlylltepevarnlLeyRynrleaArekAkekg..lkGAlyPwesasdGeEesq 95 
                      l+ ll  +++++ r ++++ Gl  +gY+Gh fWD E+++ P++l+ +p +a++lLeyR++rl+ Ar kAk+      GA++Pwesa +G E+  
       KOO20942.1 318 LYYLL-SSVREEVRFSLSPGGLASNGYNGHSFWDCETWMFPTLLAWHPSIAQSLLEYRVERLPLARAKAKSYKppYAGAMFPWESAVSGAETC- 409
                      77887.567888999******************************************************97652278************9999. PP

  Glyco_hydro_65m  96 elhlnirsgewepdaseeeiHvnaaiayavvqYveatgDeefleeeglellvetarfWasraeldkdkgryeidgviGPdEYeenvdnNaytnl 189
                                w  d+++ e H+++++a+a+ q++++t  + + ++ g++l    a fW+sr+el+ + g  +i+ vi PdEY  + d+ +ytn 
       KOO20942.1 410 --------PSWA-DTGQLEQHITGDVAFAARQFFAMTRNATWANSSGFDLASGAADFWVSRVELNATDGLAHIKHVIPPDEYATG-DDSVYTNC 493
                      ........7899.999******************************************************************987.9******* PP

  Glyco_hydro_65m 190 iaawnlelalealeeleee 208
                      +aa  l+la+  ++++ + 
       KOO20942.1 494 VAAESLRLAAAWAARFGRM 512
                      *********9999888765 PP

  == domain 2  score: 18.7 bits;  conditional E-value: 6.8e-08
  Glyco_hydro_65m 281 viKQaDvllllyllkeefseeqikanldfYeprtv.hdSslSalvhaivaaelgklekalelfkea.ariDl..daqerstedGiH..iaslag 368
                       iKQaDv+ll y l  ++s++  +a l  Ye  t  ++ ++  ++hai   + g+ + a  lf+++ a++ +  ++ +++ + G    ++  +g
       KOO20942.1 546 QIKQADVVLLAYPLMLNMSDAVRQADLAAYESATDpNGPAMTWAMHAIGHLDNGRPDLAASLFNRSfANVQMpfAVWTETPQGGTTnlLTGAGG 639
                      58*****************************9996367899**********************9873345554266666666665333677889 PP

  Glyco_hydro_65m 369 tleaivqgfaglrlrege 386
                       l+ +  g+aglr++++ 
       KOO20942.1 640 FLQGVLMGYAGLRIHDEY 657
                      9************99875 PP

>> DUF2152  Uncharacterized conserved protein (DUF2152)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.8   0.0   1.2e-05      0.11      88     345 ..      53     326 ..      39     334 .. 0.52
   2 !   10.0   0.0   2.1e-05      0.19     408     463 ..     629     682 ..     605     728 .. 0.74

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 1.2e-05
     DUF2152  88 yvgnGyigldvaadnLrvkekervlavetnfsPivsvkaqgalaekeatv.....vefkeGlvrrlrCl................ssdrecvlvsedyy 165
                 ++gnG ++ ++ a+ L +         +  fs   s +a+   +++ atv     v+  e +  r++                   +d+ + ++++ ++
  KOO20942.1  53 TIGNGQLATQIDANALYIAGVF-NGPAAKPFSDRASAAADDDVSHR-ATVtsplnVQCAESMTARFKPAgaaldlrgarylrrstAADGSGGIIEQRFF 149
                 5666666666666666666222.22223334444443333332222.2220111133344444444444667777777777776677788888999999 PP

     DUF2152 166 AHRtrPnvlvqeiqitnptervvdlelvvprvsdlpral..........tsslkkvee..lgellvlsgrvasvs..dgkiilvvvvakklvaklqvsk 250
                 AHRt+  +lv   +++n     ++  lv+  ++ + +++          + ++k+       + +v+sgr  + +  ++   lv+++ + +++   +  
  KOO20942.1 150 AHRTERGLLVL--ELANVGSAPITCTLVGGLAAGVKSRIdtkdiafglrSANVKLPGGsgTANVTVMSGRTRVSEtaQTPTVLVALAVTAMDEISPIVL 246
                 99999888885..45676666666666555443333322000000011122222222222225555555543333222233344444444444433333 PP

     DUF2152 251 rgeldetvllvihaskpiseskvaktlealeeeakkemikllq....sskkakelkqeHidvWadlfatGfeikkskaehtlngdrinatlYallsqsr 345
                       t+l ++ +s                ++a  e+  l       + ++ +l     + Wa+l+++G+  +   +        +na lY+lls +r
  KOO20942.1 247 PPGATRTLLASVATSI---------------DTADPEAAALAAygaaAALPTGALATSSAKAWAQLWESGVAFEGRPDVA----VAVNASLYYLLSSVR 326
                 3333334444443332...............223333322222222245668899999**************99877764....58**********987 PP

  == domain 2  score: 10.0 bits;  conditional E-value: 2.1e-05
     DUF2152 408 GCknLvraGAsGilqamvlsfgglrfsenHLelqidpkvLHrdyalrginYknkdh 463
                 G  nL  +GA G lq++++ ++glr ++++L l        ++ a+rg++Y    +
  KOO20942.1 629 GTTNL-LTGAGGFLQGVLMGYAGLRIHDEYLTLRPALIEGTQSVAVRGLRYRGA-T 682
                 44555.59***********************99988888899999999999874.3 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (755 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       325  (0.0181271); expected 358.6 (0.02)
Passed bias filter:                      237  (0.0132188); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.58u 0.26s 00:00:00.84 Elapsed: 00:00:00.40
# Mc/sec: 5596.98
//
Query:       KOO20943.1  [L=936]
Description: wd40 repeat-containing protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    7.4e-26   90.6   6.9    2.9e-11   43.8   0.3    3.7  3  Ank_2        Ankyrin repeats (3 copies)
    2.1e-19   69.3  11.2    3.9e-07   30.2   0.0    4.7  4  Ank_5        Ankyrin repeats (many copies)
    2.1e-19   69.6   2.6      2e-06   28.2   0.0    4.7  4  Ank_4        Ankyrin repeats (many copies)
    2.2e-19   69.4   2.7     0.0016   19.2   0.0    6.6  6  WD40         WD domain, G-beta repeat
    1.9e-12   47.0  10.7     0.0006   20.2   0.6    6.1  6  Ank          Ankyrin repeat
    4.4e-10   38.9   7.3      0.035   14.6   0.0    6.0  5  Ank_3        Ankyrin repeat
    3.8e-08   32.8   1.8    4.1e-06   26.4   0.1    4.1  4  LRR_6        Leucine Rich repeat
      5e-07   29.9   0.0       0.15   12.4   0.0    4.4  5  ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain
  ------ inclusion threshold ------
      0.093   13.2   0.3        3.9    8.0   0.0    2.8  2  LRR_4        Leucine Rich repeats (2 copies)
       0.18   11.8   0.0       0.35   10.8   0.0    1.5  1  F-box        F-box domain
       0.25   11.1   1.2         32    4.4   0.0    2.8  3  LRR_8        Leucine rich repeat


Domain annotation for each model (and alignments):
>> Ank_2  Ankyrin repeats (3 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.8   0.3   1.8e-14   2.9e-11       2      81 ..     593     683 ..     592     685 .. 0.87
   2 !   29.4   2.1   5.4e-10   8.8e-07       1      66 [.     659     735 ..     659     740 .. 0.81
   3 !   32.2   0.0   7.4e-11   1.2e-07      25      73 ..     742     796 ..     733     803 .. 0.87

  Alignments for each domain:
  == domain 1  score: 43.8 bits;  conditional E-value: 1.8e-14
       Ank_2   2 hlAakngnlelvklLl.eg.adpn..k.ngktaLhyAakngnleivklLleh......adndgrtpLhyAarsghleivklLlekgadinl 81 
                   A k+g+le+v++Ll  g +d+n  +  g t+L++A+ +g++ i   Ll++      +++dg+ +L +Aa  g+ e+v++Ll ++a +++
  KOO20943.1 593 LRATKEGDLETVDHLLeVGmVDINfpNqHGDTPLILACWYGHKYITARLLDNgallnlTNCDGNCALNVAAYRGNAEAVEMLLRHKATVDV 683
                 67899999********8445999997369*************999999999778877777***********99**********88887765 PP

  == domain 2  score: 29.4 bits;  conditional E-value: 5.4e-10
       Ank_2   1 LhlAakngnlelvklLl.egadpn..k..ngktaLhyAakngnleivklLleh......adndgrtpLhyAarsghl 66 
                 L +Aa+ gn e+v+ Ll ++a ++  +  +gktaL  Aa  g++ ++  Ll++      ad +g+t+L +A +++h+
  KOO20943.1 659 LNVAAYRGNAEAVEMLLrHKATVDvpDnmTGKTALVKAAYVGHTPTAINLLDAkanvnhADTQGYTALAFATSFNHE 735
                 5689999999*******877666665358***************8877777633555557799*********99995 PP

  == domain 3  score: 32.2 bits;  conditional E-value: 7.4e-11
       Ank_2  25 ngktaLhyAakngnleivklLleh......adndgrtpLhyAarsghleivklLl 73 
                 +g t+L++Aa +g le+v+lLl+h      +d++g+t+L yA + + +ei+  L 
  KOO20943.1 742 FGITPLIHAAARGRLETVQLLLQHgarpllVDSEGKTALDYAESANFQEIASELR 796
                 89*********************998898888**********999999***9997 PP

>> Ank_5  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.0   0.6   3.4e-06    0.0055       7      49 ..     613     655 ..     607     657 .. 0.88
   2 !   22.3   2.3   7.2e-08   0.00012       1      53 [.     641     693 ..     641     693 .. 0.95
   3 !   13.3   0.5   4.7e-05     0.077      16      56 .]     689     729 ..     677     729 .. 0.87
   4 !   30.2   0.0   2.4e-10   3.9e-07      12      56 .]     739     783 ..     737     783 .. 0.95

  Alignments for each domain:
  == domain 1  score: 17.0 bits;  conditional E-value: 3.4e-06
       Ank_5   7 advnrldgggntpLhvAakygaadvvrlLlargadlnltdsrG 49 
                 +d+n ++++g tpL++A++yg+  +  +Ll++ga lnlt+ +G
  KOO20943.1 613 VDINFPNQHGDTPLILACWYGHKYITARLLDNGALLNLTNCDG 655
                 57777899999****************************9666 PP

  == domain 2  score: 22.3 bits;  conditional E-value: 7.2e-08
       Ank_5   1 LlehgpadvnrldgggntpLhvAakygaadvvrlLlargadlnltdsrG.ltal 53 
                 Ll++g a +n ++ +gn +L+vAa++g+a+ v++Ll + a  ++ d++  +tal
  KOO20943.1 641 LLDNG-ALLNLTNCDGNCALNVAAYRGNAEAVEMLLRHKATVDVPDNMTgKTAL 693
                 89***.******************************999999999999989987 PP

  == domain 3  score: 13.3 bits;  conditional E-value: 4.7e-05
       Ank_5  16 gntpLhvAakygaadvvrlLlargadlnltdsrGltaldlA 56 
                 g t+L  Aa+ g+ + +++Ll+  a+ n  d +G+tal +A
  KOO20943.1 689 GKTALVKAAYVGHTPTAINLLDAKANVNHADTQGYTALAFA 729
                 23************************************887 PP

  == domain 4  score: 30.2 bits;  conditional E-value: 2.4e-10
       Ank_5  12 ldgggntpLhvAakygaadvvrlLlargadlnltdsrGltaldlA 56 
                 +d +g tpL++Aa +g+++ v+lLl +ga + l ds+G+tald+A
  KOO20943.1 739 QDVFGITPLIHAAARGRLETVQLLLQHGARPLLVDSEGKTALDYA 783
                 677899**************************************9 PP

>> Ank_4  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.1   0.0   0.00014      0.24       4      48 ..     591     635 ..     588     642 .. 0.81
   2 !   14.9   0.3   1.8e-05     0.029      12      55 .]     633     675 ..     632     675 .. 0.91
   3 !   12.6   0.1   9.9e-05      0.16       3      51 ..     691     738 ..     686     740 .. 0.90
   4 !   28.2   0.0   1.2e-09     2e-06       3      42 ..     745     783 ..     743     791 .. 0.95

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 0.00014
       Ank_4   4 aLhyaaisgrlelvrlLlekg.adinaqdnrsGetalhiAakrgnv 48 
                 +L +a ++g+le+v+ Lle g +din   n  G+t+l+ A++ g++
  KOO20943.1 591 PLLRATKEGDLETVDHLLEVGmVDINFP-NQHGDTPLILACWYGHK 635
                 68888899**********8776777776.777*********99984 PP

  == domain 2  score: 14.9 bits;  conditional E-value: 1.8e-05
       Ank_4  12 grlelvrlLlekgadinaqdnrsGetalhiAakrgnveilklLl 55 
                 g+  + ++Ll++ga +n + n +G+ al  Aa+rgn e++++Ll
  KOO20943.1 633 GHKYITARLLDNGALLNLT-NCDGNCALNVAAYRGNAEAVEMLL 675
                 56667789**********9.999********************8 PP

  == domain 3  score: 12.6 bits;  conditional E-value: 9.9e-05
       Ank_4   3 taLhyaaisgrlelvrlLlekgadinaqdnrsGetalhiAakrgnveil 51 
                 taL +aa+ g+++++  Ll+ +a++n+  + +G tal +A ++++  +l
  KOO20943.1 691 TALVKAAYVGHTPTAINLLDAKANVNHA-DTQGYTALAFATSFNHEYML 738
                 7889999999999999999********8.***************97665 PP

  == domain 4  score: 28.2 bits;  conditional E-value: 1.2e-09
       Ank_4   3 taLhyaaisgrlelvrlLlekgadinaqdnrsGetalhiA 42 
                 t+L +aa+ grle+v+lLl++ga +  + +++G tal++A
  KOO20943.1 745 TPLIHAAARGRLETVQLLLQHGARPLLV-DSEGKTALDYA 783
                 8999************************.*********99 PP

>> WD40  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.1   0.0   0.00076       1.2      10      37 ..     340     368 ..     334     369 .. 0.85
   2 !   10.9   0.1   0.00042      0.69       9      38 .]     373     410 ..     366     410 .. 0.85
   3 !   15.7   0.0   1.3e-05     0.021      10      34 ..     422     447 ..     415     448 .. 0.87
   4 !    7.0   0.0    0.0072        12      24      38 .]     469     483 ..     460     483 .. 0.88
   5 !   19.2   0.0     1e-06    0.0016      12      38 .]     498     524 ..     486     524 .. 0.85
   6 ?   -2.0   0.0       4.9     8e+03      13      37 ..     540     563 ..     534     563 .. 0.78

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.00076
                 S.SSEEEEEEETTSSEEEEEETTSEEEEE CS
        WD40  10 H.ssvtslafspdgawlasGsdDgtvriW 37 
                 H + v++l+ ++dg++la+++ D++v  W
  KOO20943.1 340 HeNVVNALQLNHDGSLLATCGNDKKVTTW 368
                 74448***************99**99766 PP

  == domain 2  score: 10.9 bits;  conditional E-value: 0.00042
                 SSSS........EEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40   9 GHss........vtslafspdgawlasGsdDgtvriWd 38 
                 GH+         + ++afs+ g +la+G+    v++Wd
  KOO20943.1 373 GHKAkelpldgwIKAVAFSRGGEMLAAGGATSAVHVWD 410
                 7733457777789****************9*******9 PP

  == domain 3  score: 15.7 bits;  conditional E-value: 1.3e-05
                 S.SSEEEEEEETTSSEEEEEETTSEE CS
        WD40  10 H.ssvtslafspdgawlasGsdDgtv 34 
                 H + v+++afs+dg+ lasG++D+ v
  KOO20943.1 422 HeGTVNAVAFSSDGSKLASGGMDKYV 447
                 7566*******************987 PP

  == domain 4  score: 7.0 bits;  conditional E-value: 0.0072
                 EEEEEETTSEEEEEE CS
        WD40  24 wlasGsdDgtvriWd 38 
                  lasG+ D+ v iW+
  KOO20943.1 469 ILASGGGDRRVSIWN 483
                 5899988*******8 PP

  == domain 5  score: 19.2 bits;  conditional E-value: 1e-06
                 SEEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40  12 svtslafspdgawlasGsdDgtvriWd 38 
                  v++l+fsp g++lasG+ D+ v +W+
  KOO20943.1 498 TVYALRFSPAGDLLASGGGDKQVSLWS 524
                 499**************88*******5 PP

  == domain 6  score: -2.0 bits;  conditional E-value: 4.9
                 EEEEEEETTSSEEEEEETTSEEEEE CS
        WD40  13 vtslafspdgawlasGsdDgtvriW 37 
                 + +l fs +g+ +a++s  + vr++
  KOO20943.1 540 IKALGFSASGTDVACAS-GKEVRLY 563
                 66777999999999888.8888875 PP

>> Ank  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.2   0.6   3.7e-07    0.0006       1      32 []     621     653 ..     621     653 .. 0.93
   2 !   10.5   0.1   0.00042      0.69       1      32 []     654     686 ..     654     686 .. 0.94
   3 ?    1.6   0.4      0.27   4.5e+02       2      31 ..     689     719 ..     688     720 .. 0.83
   4 ?   -1.1   0.0         2   3.2e+03       2      18 ..     722     738 ..     721     740 .. 0.77
   5 !   15.5   0.0   1.1e-05     0.018       2      31 ..     743     773 ..     742     774 .. 0.90
   6 ?   -0.9   0.0       1.6   2.6e+03       2      20 ..     776     794 ..     775     803 .. 0.68

  Alignments for each domain:
  == domain 1  score: 20.2 bits;  conditional E-value: 3.7e-07
                 TSBBHHHHHHHHTTHHHHHHHH.TTTSTTCBTT CS
         Ank   1 dGnTPLHlAatngkkriiklLL.hGAnlnaldn 32 
                 +G+TPL lA+++g+k i+  LL +GA ln++++
  KOO20943.1 621 HGDTPLILACWYGHKYITARLLdNGALLNLTNC 653
                 69********************88**9999985 PP

  == domain 2  score: 10.5 bits;  conditional E-value: 0.00042
                 TSBBHHHHHHHHTTHHHHHHHH.TTTSTTCBTT CS
         Ank   1 dGnTPLHlAatngkkriiklLL.hGAnlnaldn 32 
                 dGn +L +Aa++g+++ +++LL h A ++  dn
  KOO20943.1 654 DGNCALNVAAYRGNAEAVEMLLrHKATVDVPDN 686
                 8999******************99999999886 PP

  == domain 3  score: 1.6 bits;  conditional E-value: 0.27
                 SBBHHHHHHHHTTHHHHHHHH.TTTSTTCBT CS
         Ank   2 GnTPLHlAatngkkriiklLL.hGAnlnald 31 
                 G T+L  Aa+ g++  + +LL   An+n  d
  KOO20943.1 689 GKTALVKAAYVGHTPTAINLLdAKANVNHAD 719
                 89999999999998888889*446***9866 PP

  == domain 4  score: -1.1 bits;  conditional E-value: 2
                 SBBHHHHHHHHTTHHHH CS
         Ank   2 GnTPLHlAatngkkrii 18 
                 G+T+L  A +++++ ++
  KOO20943.1 722 GYTALAFATSFNHEYML 738
                 9****998888876655 PP

  == domain 5  score: 15.5 bits;  conditional E-value: 1.1e-05
                 SBBHHHHHHHHTTHHHHHHHH.TTTSTTCBT CS
         Ank   2 GnTPLHlAatngkkriiklLL.hGAnlnald 31 
                 G TPL  Aa +g ++ ++lLL hGA + ++d
  KOO20943.1 743 GITPLIHAAARGRLETVQLLLqHGARPLLVD 773
                 99****99989**********99*9887776 PP

  == domain 6  score: -0.9 bits;  conditional E-value: 1.6
                 SBBHHHHHHHHTTHHHHHH CS
         Ank   2 GnTPLHlAatngkkriikl 20 
                 G T+L +A + +  +i+++
  KOO20943.1 776 GKTALDYAESANFQEIASE 794
                 99*****743333455555 PP

>> Ank_3  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.7   0.0      0.35   5.7e+02       4      29 ..     590     615 ..     589     617 .. 0.83
   2 ?    2.0   0.1      0.29   4.7e+02       1      27 [.     621     646 ..     621     650 .. 0.76
   3 !   13.9   0.0   3.7e-05     0.061       1      30 [.     654     682 ..     654     683 .. 0.92
   4 ?    5.5   0.0      0.02        32       2      31 .]     689     717 ..     688     717 .. 0.94
   5 !   14.6   0.0   2.2e-05     0.035       2      27 ..     743     767 ..     742     771 .. 0.91

  Alignments for each domain:
  == domain 1  score: 1.7 bits;  conditional E-value: 0.35
       Ank_3   4 tpLhlAarsgnleivkfLlenkgadv 29 
                  pL +A + g+le v+ Lle   +d+
  KOO20943.1 590 LPLLRATKEGDLETVDHLLEVGMVDI 615
                 699*****************665555 PP

  == domain 2  score: 2.0 bits;  conditional E-value: 0.29
       Ank_3   1 nGetpLhlAarsgnleivkfLlenkga 27 
                 +G tpL lA+ +g+  i   Ll+ +ga
  KOO20943.1 621 HGDTPLILACWYGHKYITARLLD-NGA 646
                 699*******9998855777777.566 PP

  == domain 3  score: 13.9 bits;  conditional E-value: 3.7e-05
       Ank_3   1 nGetpLhlAarsgnleivkfLlenkgadvn 30 
                 +G+++L +Aa  gn e v++Ll+ + a v+
  KOO20943.1 654 DGNCALNVAAYRGNAEAVEMLLR-HKATVD 682
                 69*********************.788876 PP

  == domain 4  score: 5.5 bits;  conditional E-value: 0.02
       Ank_3   2 GetpLhlAarsgnleivkfLlenkgadvna 31 
                 G t+L  Aa  g+++ ++ Ll+   a+vn+
  KOO20943.1 689 GKTALVKAAYVGHTPTAINLLD-AKANVNH 717
                 89************99******.8999996 PP

  == domain 5  score: 14.6 bits;  conditional E-value: 2.2e-05
       Ank_3   2 GetpLhlAarsgnleivkfLlenkga 27 
                 G tpL +Aa  g+le v++Ll+ +ga
  KOO20943.1 743 GITPLIHAAARGRLETVQLLLQ-HGA 767
                 99********************.898 PP

>> LRR_6  Leucine Rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.0       4.1   6.7e+03      14      23 ..      48      57 ..      47      57 .. 0.89
   2 ?    0.3   0.0      0.62     1e+03       3      12 ..     156     165 ..     156     171 .. 0.89
   3 !   26.4   0.1   2.5e-09   4.1e-06       4      24 .]     185     205 ..     182     205 .. 0.93
   4 ?    1.5   0.1      0.25   4.1e+02       5      15 ..     278     288 ..     275     290 .. 0.83

  Alignments for each domain:
  == domain 1  score: -2.3 bits;  conditional E-value: 4.1
       LRR_6 14 dIgDeGaeaL 23
                dI+D+ +e+L
  KOO20943.1 48 DITDVDVEKL 57
                7*****9997 PP

  == domain 2  score: 0.3 bits;  conditional E-value: 0.62
       LRR_6   3 thLteLdLsg 12 
                 +++teLdLs+
  KOO20943.1 156 SSVTELDLSY 165
                 579*****96 PP

  == domain 3  score: 26.4 bits;  conditional E-value: 2.5e-09
       LRR_6   4 hLteLdLsgNdIgDeGaeaLa 24 
                  Lt+L+Ls+N+Ig eGa+aLa
  KOO20943.1 185 VLTSLNLSSNNIGPEGAKALA 205
                 69******************8 PP

  == domain 4  score: 1.5 bits;  conditional E-value: 0.25
       LRR_6   5 LteLdLsgNdI 15 
                 L +L+Ls N++
  KOO20943.1 278 LASLNLSQNQL 288
                 679******97 PP

>> ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.7   0.0     0.023        38      39      76 ..     342     379 ..     338     382 .. 0.86
   2 !    6.7   0.0    0.0054       8.9      39      89 ..     383     431 ..     380     434 .. 0.85
   3 ?    0.4   0.0      0.49   7.9e+02      37      62 ..     422     447 ..     409     451 .. 0.86
   4 ?    1.0   0.0      0.33   5.4e+02      52      79 ..     469     496 ..     468     500 .. 0.88
   5 !   12.4   0.0     9e-05      0.15      30      89 ..     482     545 ..     476     548 .. 0.79

  Alignments for each domain:
  == domain 1  score: 4.7 bits;  conditional E-value: 0.023
  ANAPC4_WD40  39 sevrsLaWkpdgklLavaysdgevrlldaesgkvvhsl 76 
                  + v++L+ ++dg+lLa   +d +v   ++ +g+  ++l
   KOO20943.1 342 NVVNALQLNHDGSLLATCGNDKKVTTWSMPDGHKAKEL 379
                  6799********************99999988876665 PP

  == domain 2  score: 6.7 bits;  conditional E-value: 0.0054
  ANAPC4_WD40  39 sevrsLaWkpdgklLavaysdgevrlldaesgkvvhslsvksekavtclgW 89 
                  + ++++a++  g++La + + ++v++ d+ s    h+l+ + +  v+ + +
   KOO20943.1 383 GWIKAVAFSRGGEMLAAGGATSAVHVWDVPSYAHRHALPHEGT--VNAVAF 431
                  66999**************************999999987765..666655 PP

  == domain 3  score: 0.4 bits;  conditional E-value: 0.49
  ANAPC4_WD40  37 edsevrsLaWkpdgklLavaysdgev 62 
                  ++++v+++a++ dg+ La +  d  v
   KOO20943.1 422 HEGTVNAVAFSSDGSKLASGGMDKYV 447
                  57899*************99888765 PP

  == domain 4  score: 1.0 bits;  conditional E-value: 0.33
  ANAPC4_WD40  52 lLavaysdgevrlldaesgkvvhslsvk 79 
                  +La +  d +v++ ++++g++ +sl+ +
   KOO20943.1 469 ILASGGGDRRVSIWNVQTGELKSSLQRD 496
                  7999****************99988765 PP

  == domain 5  score: 12.4 bits;  conditional E-value: 9e-05
  ANAPC4_WD40  30 wtl......eedkedsevrsLaWkpdgklLavaysdgevrlldaesgkvvhslsvksekavtclgW 89 
                  w++      ++ ++ds+v +L+++p g lLa +  d +v+l +  +g++++++++ +  a++ lg+
   KOO20943.1 482 WNVqtgelkSSLQRDSTVYALRFSPAGDLLASGGGDKQVSLWS-RHGRLLSESPALDG-AIKALGF 545
                  544444666667899*************************997.56888888888777.4777776 PP

>> LRR_4  Leucine Rich repeats (2 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.0   0.0    0.0024       3.9       3      34 ..     158     195 ..     156     199 .. 0.67
   2 ?    2.1   0.1      0.18   2.9e+02      22      35 ..     275     287 ..     267     291 .. 0.72

  Alignments for each domain:
  == domain 1  score: 8.0 bits;  conditional E-value: 0.0024
                 --EEE--SS---E-S-...HH.....H-TT--EEE-.-S- CS
       LRR_4   3 LevLdLsnNqltdipl...le.....klpnLkeLdLsgNn 34 
                  ++LdLs  ql    +   l       ++ L++L+Ls+Nn
  KOO20943.1 158 VTELDLSYKQLEG--PaviLVaflipAMTVLTSLNLSSNN 195
                 6888999888776..3345224444458889999998883 PP

  == domain 2  score: 2.1 bits;  conditional E-value: 0.18
                 -TT--EEE-.-S-- CS
       LRR_4  22 lpnLkeLdLsgNnl 35 
                 +p L +L+Ls+N +
  KOO20943.1 275 MPLLASLNLSQN-Q 287
                 888888999888.4 PP

>> F-box  F-box domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   0.00021      0.35      17      40 ..      26      49 ..      24      51 .. 0.94

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00021
                TS-HHHHHHHCTT-HHHHHHHTTH CS
       F-box 17 rLplsdllalrrVSkgwrilidsd 40
                +L++++ la+++ +k++r++i ++
  KOO20943.1 26 HLDFTSCLAAASACKTLRRAITDI 49
                9********************986 PP

>> LRR_8  Leucine rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.0       4.1   6.7e+03      26      34 ..     157     165 ..     156     169 .. 0.47
   2 ?    4.4   0.1      0.02        32      27      37 ..     186     196 ..     180     197 .. 0.61
   3 ?    4.4   0.0      0.02        32      48      61 .]     275     288 ..     268     294 .. 0.61

  Alignments for each domain:
  == domain 1  score: -3.0 bits;  conditional E-value: 4.1
                 T--EEE--S CS
       LRR_8  26 nLkvLdLsn 34 
                 ++++LdLs+
  KOO20943.1 157 SVTELDLSY 165
                 344555554 PP

  == domain 2  score: 4.4 bits;  conditional E-value: 0.02
                 --EEE--SS-- CS
       LRR_8  27 LkvLdLsnNll 37 
                 L++L+Ls+N++
  KOO20943.1 186 LTSLNLSSNNI 196
                 55666666655 PP

  == domain 3  score: 4.4 bits;  conditional E-value: 0.02
                 --S-.EEE--SS-- CS
       LRR_8  48 LpsLrsLdLsgNrL 61 
                 +p L sL+Ls+N+L
  KOO20943.1 275 MPLLASLNLSQNQL 288
                 44555555555554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (936 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       333  (0.0185733); expected 358.6 (0.02)
Passed bias filter:                      297  (0.0165653); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.68u 0.25s 00:00:00.93 Elapsed: 00:00:00.44
# Mc/sec: 6325.11
//
Query:       KOO20944.1  [L=1565]
Description: kinesin [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.2e-75  254.5   0.0    2.3e-75  253.6   0.0    1.5  1  Kinesin          Kinesin motor domain
    7.4e-29  100.6   0.0      6e-28   97.7   0.0    2.5  2  Microtub_bd      Microtubule binding
    5.9e-09   36.3   0.0    1.8e-06   28.3   0.0    3.4  3  Calpain_III      Calpain large subunit, domain III
  ------ inclusion threshold ------
      0.023   15.0   0.0       0.12   12.7   0.0    2.2  1  AAA_22           AAA domain
      0.026   14.6   0.4        4.8    7.4   0.0    3.4  3  Arm              Armadillo/beta-catenin-like repeat
      0.088   12.7   1.9        0.2   11.6   0.4    2.5  2  Sec20            Sec20
       0.24   11.5   1.7         17    5.5   0.0    3.9  4  Atx10homo_assoc  Spinocerebellar ataxia type 10 protein domai
        8.9    6.5  16.0        1.5    9.0   0.0    3.9  3  Fib_alpha        Fibrinogen alpha/beta chain family


Domain annotation for each model (and alignments):
>> Kinesin  Kinesin motor domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  253.6   0.0     1e-78   2.3e-75      32     330 ..      42     330 ..      17     333 .. 0.93

  Alignments for each domain:
  == domain 1  score: 253.6 bits;  conditional E-value: 1e-78
                 EEEECTTSCEEEEESEEEETTS-HHHHHHHHHHHHHHHHHTTSEEEEEEEESTTSSHHHHHTBC......TTTSBSHHHHHHHHHHHHHHHCTTTHEEE CS
     Kinesin  32 kkenkeeeekkfkFdkvfdeeatqeevyeetakplvesvleGynatifaYGqtgsGKTyTmegk......eeeeeGiipraleelFesikkekeekeke 124
                  ++++++  ++f+Fdkvf+ +++qeev++++ +  ++s+ +G+n+ti+aYGqtgsGKT++meg       + +++G+ipr +e++F + +++++   k+
  KOO20944.1  42 YRKEETSDISRFTFDKVFGMDSKQEEVFTTIGEVALSSLRQGFNSTILAYGQTGSGKTFSMEGAkdkdtgRYTQPGLIPRLFEQIFIKFRSDETI--KS 138
                 5567778889******************************************************9999998899***************987766..99 PP

                 EEEEEEEEEEETTEEEETTSTTTTSTSSEBEEEECTTSCCEEETTS--EEESSHHHHHHHHHHHHHHHTSTTSSCTSHHCCSEEEEEEEEEEEETTTTT CS
     Kinesin 125 fsvkvsylEiYneeiyDLLeskkskkkkklkiredskkgevyvkgltevevksaeevlellekgeknrkvaetklneeSSRSHavftitleqknlkeet 223
                 f+++++++E+Yne+  DLL ++     k +++  d++ g ++ k+   + +k+a e++++ e+g + r++a+tk+ne+SSRSHa+++i ++ +++k   
  KOO20944.1 139 FEMSLQFIELYNEQPQDLLGKR-----KVVDVSMDPSGG-YQCKDAVRHVCKDALEAQRVYEQGCAMRATAATKMNEASSRSHALLQISVNWTEQKG-- 229
                 ********************88.....5699*****966.***************************************************999663.. PP

                 CEEEEEEEEEEEEEEECCCHHHHSSTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCCTSTSCGGGSHHHHHTGGGHSSSSEEEEEEEE-TBGGGHHHHHH CS
     Kinesin 224 eekvkisklnLvDLAGsErasktgaaegerlkEaaniNkSLlaLgrvisaLaekkkskhipYRdSkLTrlLqdsLgGnsktlmivtvspssenleetls 322
                    ++ + +nLvDLAGsE ++k+g aeg++ kE+ +iN SL  L   ++ Lae   ++hipYR+SkLT++L + LgG++   +i+ +s s+e+++e + 
  KOO20944.1 230 ---KSFGVVNLVDLAGSEGLKKSG-AEGQNAKEGIKINLSLCKLALTVKCLAEG--ATHIPYRESKLTMMLAKGLGGSNMLHIILALSNSREQVAEGTA 322
                 ...258******************.58999************************..******************************************* PP

                 HHHHHHHH CS
     Kinesin 323 tlkfaera 330
                 +l+f++ +
  KOO20944.1 323 CLRFGQSC 330
                 ****9875 PP

>> Microtub_bd  Microtubule binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   97.7   0.0   2.7e-31     6e-28      23     149 .]      13     157 ..       4     157 .. 0.93
   2 ?   -1.4   0.0       0.9     2e+03      94     110 ..    1349    1367 ..    1334    1381 .. 0.67

  Alignments for each domain:
  == domain 1  score: 97.7 bits;  conditional E-value: 2.7e-31
                  EEEEEEECCCS-T............EEEETTT...TTTEEEE-SEEEECTTHCCCCCCCCHHHHHHHH.TT--EEEEEEES................. CS
  Microtub_bd  23 Rvfarvrpelesek...........akikfpeeekkkkkefsFdrvfeseseqeevfeeisqlvqsal.dgynvcifaygqTGsGKtyTmeg...... 102
                  Rv+ar+rp+  +++           +++++ +ee++   +f+Fd+vf  +s+qeevf  i  ++ s+l +g n +i+aygqTGsGKt+ meg      
   KOO20944.1  13 RVYARLRPMFGRDAgqpelftvvdgTSLDYRKEETSDISRFTFDKVFGMDSKQEEVFTTIGEVALSSLrQGFNSTILAYGQTGSGKTFSMEGakdkdt 110
                  9**********98889999988888888888899**********************************************************988777 PP

                  ......ST-HCHHHHHHHHHHCCTSCCCCEEEEEEEEEEESS-EEETT CS
  Microtub_bd 103 .eeeeagmipraveeifetiselkekgwkyeielqfveiynekvqDlL 149
                   + +++g ipr++e+if ++++  e+ +++e++lqf+e+yne+ qDlL
   KOO20944.1 111 gRYTQPGLIPRLFEQIFIKFRSD-ETIKSFEMSLQFIELYNEQPQDLL 157
                  667899************99999.6899*******************8 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 0.9
                   ................ST- CS
  Microtub_bd   94 sGKtyTmeg..eeeeagmi 110 
                   +G tyTm++   +++++ +
   KOO20944.1 1349 AGTTYTMTTrcINQRQEPV 1367
                   4668888875533333333 PP

>> Calpain_III  Calpain large subunit, domain III
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.0       1.7   3.8e+03      44      90 ..     306     350 ..     299     362 .. 0.74
   2 ?    3.7   0.0     0.031        69      24      89 ..     767     830 ..     758     848 .. 0.68
   3 !   28.3   0.0     8e-10   1.8e-06       2     140 ..     988    1138 ..     987    1139 .. 0.77

  Alignments for each domain:
  == domain 1  score: -1.9 bits;  conditional E-value: 1.7
  Calpain_III  44 vlvslmqknrrkerkkgeelltigfavykveeeeenrklrkeffakn 90 
                  ++++l   n+r++  +g+ +l  g + + ++ + +++kl+ke+ + +
   KOO20944.1 306 IILALS--NSREQVAEGTACLRFGQSCLSMSVNPSTNKLEKEQAEMR 350
                  444444..588888999999******999989999999988875544 PP

  == domain 2  score: 3.7 bits;  conditional E-value: 0.031
  Calpain_III  24 qfrleleeeededeeekkctvlvslmqknrrkerkkgeelltigfavykveeeeenrklrkeffak 89 
                  q+   l +++d d++e+ c  + +  q  + ++r+ + e   i   vy+v +e++++ ++++ +++
   KOO20944.1 767 QYLSALLQSADPDDKENACVAIAAAAQD-SPTTRQACFE-QGISALVYQVLHETSQHAMPRQRLQR 830
                  6777776767999999999999999994.4444555444.679999***94444444444444333 PP

  == domain 3  score: 28.3 bits;  conditional E-value: 8e-10
  Calpain_III    2 eWvkgstAGGcrnkketfwkNPqfrleleeeededeeekkctvlvslmqknrrkerkkgeelltigfavykveeeeenrklrkeffakn....... 90  
                   eW++g +AGG r+ +++f+ NPqf l+ ++        + c vl  +    r+++r k+++ +   + v   + e+  ++l++  ++ +       
   KOO20944.1  988 EWTDG-NAGGDRK-HASFVDNPQFLLRAPKG------ANVCLVLQDVDEAAREQARVKQRPIFLRLCVVAA-SAETLATRLTQLDINASgarpasl 1074
                   68655.7***985.79************993......4678888888887777777777765554444444.555666666666666667778888 PP

  Calpain_III   91 ..........qevarsstfinsrevvkrfklpp....GeYvivPstfepneegeFlLrvFsekk 140 
                              +v++  + +++revv r+++++      +++vP+   ++++++F+L  F++++
   KOO20944.1 1075 kdesgvlmlePDVQAALDVSKTREVVLRCHVRQstleDAWIVVPHVGCSHQHARFVLSAFADQP 1138
                   888999998778888899***********99994444469********************9875 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   5.1e-05      0.12       8      58 ..      88     140 ..      85     192 .. 0.81

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 5.1e-05
      AAA_22   8 lvvtGesGtGKTtllrrlleqldeeakaee...erpevvfvtlpsstsskdllr 58 
                 ++ +G++G+GKT++++  +++++ ++ +     +  e++f++  s+++ k++ +
  KOO20944.1  88 ILAYGQTGSGKTFSMEGAKDKDTGRYTQPGlipRLFEQIFIKFRSDETIKSF-E 140
                 7889******************999988889999999999999999999988.3 PP

>> Arm  Armadillo/beta-catenin-like repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.4   0.1     0.038        86      17      36 ..     769     788 ..     766     789 .. 0.90
   2 ?    7.4   0.0    0.0021       4.8       2      32 ..     844     875 ..     843     883 .. 0.80
   3 ?   -2.3   0.0       2.4   5.4e+03       7      39 ..     892     926 ..     887     928 .. 0.74

  Alignments for each domain:
  == domain 1  score: 3.4 bits;  conditional E-value: 0.038
                 HHHHTTTSSHHHHHHHHHHH CS
         Arm  17 LvrLLssedeevqeeAawAL 36 
                 L +LL+s d++ +e+A+ A+
  KOO20944.1 769 LSALLQSADPDDKENACVAI 788
                 889***************98 PP

  == domain 2  score: 7.4 bits;  conditional E-value: 0.0021
                 HHHHHHHHHTTHHHHHHHHTT.TSSHHHHHHH CS
         Arm   2 senkdavieaGavppLvrLLs.sedeevqeeA 32 
                 +++kd+++ + +vp L+++Ls   de + +e 
  KOO20944.1 844 DPFKDLLRAQQGVPLLLSFLSpKHDEYLIKET 875
                 6799*****************76666666555 PP

  == domain 3  score: -2.3 bits;  conditional E-value: 2.4
                 HHHHTTHHHHHHHHTT..TSSHHHHHHHHHHHHHH CS
         Arm   7 avieaGavppLvrLLs..sedeevqeeAawALsNL 39 
                 ++ ++ a+ +   LL     d ++ e Aa AL NL
  KOO20944.1 892 ELQRYEAISAYSGLLFaqMHDGQIAELAALALVNL 926
                 56667777777777777777777888899999998 PP

>> Sec20  Sec20
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.1       3.7   8.4e+03      14      34 ..     328     348 ..     319     371 .. 0.58
   2 ?   11.6   0.4   8.8e-05       0.2       2      62 ..    1435    1495 ..    1434    1513 .. 0.79

  Alignments for each domain:
  == domain 1  score: -3.2 bits;  conditional E-value: 3.7
       Sec20  14 sqllsqevqqSeenleeldas 34 
                 +  ls  v+ S++ le+ +a 
  KOO20944.1 328 QSCLSMSVNPSTNKLEKEQAE 348
                 555555555555555543333 PP

  == domain 2  score: 11.6 bits;  conditional E-value: 8.8e-05
       Sec20    2 qakqiTeslraisqllsqevqqSeenleeldastkslekleeeykqvedvlsrskklvkkl 62  
                  q++q+  sl +++++l ++v q +e + el as +++e+le e+   ++  + +   + kl
  KOO20944.1 1435 QNEQLRGSLTKSNEQLRAAVTQVAELMSELAASKRQVEHLELEWRIANGAARDASAEIAKL 1495
                  789999***********************************99988887766554444444 PP

>> Atx10homo_assoc  Spinocerebellar ataxia type 10 protein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.0       2.9   6.5e+03      52      69 ..     178     195 ..     177     212 .. 0.79
   2 ?   -1.5   0.4       1.2   2.6e+03      61      93 ..     462     496 ..     459     502 .. 0.75
   3 ?    5.5   0.0    0.0076        17       3      45 ..     830     872 ..     828     876 .. 0.84
   4 ?    2.6   0.0     0.063   1.4e+02       4      59 ..     874     929 ..     871     955 .. 0.88

  Alignments for each domain:
  == domain 1  score: -2.8 bits;  conditional E-value: 2.9
  Atx10homo_assoc  52 airnLlegneenqelvae 69 
                      a+r+++++  e+q++ ++
       KOO20944.1 178 AVRHVCKDALEAQRVYEQ 195
                      79***********98765 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 1.2
  Atx10homo_assoc  61 eenqelvaeLeakgvv..deevLeelgleveided 93 
                       e+q+  ++Le+ ++v  +e+ +++++ e+e++ +
       KOO20944.1 462 IEAQRRARALERIKAVaeNEQDIRAIETEIEMQAE 496
                      589999999*9888753477888888888888755 PP

  == domain 3  score: 5.5 bits;  conditional E-value: 0.0076
  Atx10homo_assoc   3 relvrllgnlvyknkevqdkvreldgleliLsqcniDdnnPfi 45 
                      r +v+ ++ l+++    +d +r+++g++l+Ls  +  +++ +i
       KOO20944.1 830 RVVVAAMAELAHDFDPFKDLLRAQQGVPLLLSFLSPKHDEYLI 872
                      67899**************************977665555555 PP

  == domain 4  score: 2.6 bits;  conditional E-value: 0.063
  Atx10homo_assoc   4 elvrllgnlvyknkevqdkvreldgleliLsqcniDdnnPfirewailairnLleg 59 
                      e ++llg ++ +n+ +q+++++ +++++       + ++  i e a la+ nL+ +
       KOO20944.1 874 ETLQLLGRMTQSNTGIQQELQRYEAISAYSGLLFAQMHDGQIAELAALALVNLISE 929
                      6799***********************99888899999999999999999999876 PP

>> Fib_alpha  Fibrinogen alpha/beta chain family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.0   0.0   0.00065       1.5      78     122 ..     334     378 ..     323     385 .. 0.88
   2 ?   -2.1   0.3       1.8   4.1e+03      75      95 ..     594     614 ..     544     627 .. 0.55
   3 ?    5.0   2.9     0.012        26      35     128 ..    1434    1530 ..    1420    1533 .. 0.74

  Alignments for each domain:
  == domain 1  score: 9.0 bits;  conditional E-value: 0.00065
                 HHHHHHHHHHHCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH CS
   Fib_alpha  78 vikksskeleeeilrlketidaqesnirvLqnvlesneqkiqkLe 122
                  ++ s+++le+e++++++ i +q ++i  Lq+  e+++ ++++ +
  KOO20944.1 334 SVNPSTNKLEKEQAEMRAVIAEQLQEIADLQGENENLKLELERAK 378
                 678899**************************9999988887765 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 1.8
                 HHHHHHHHHHHHHHCCCHHHH CS
   Fib_alpha  75 ndnvikksskeleeeilrlke 95 
                 ++  ++  +++le e +++++
  KOO20944.1 594 QEAELEVTRSNLEAELEKMRA 614
                 333333333333333333332 PP

  == domain 3  score: 5.0 bits;  conditional E-value: 0.012
                  HHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH...HHHHHHHHHHHHHCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
   Fib_alpha   35 kdlekleneleeisnstkeaeelvkeikdslrekqkskkdn...dnvikksskeleeeilrlketidaqesnirvLqnvlesneqkiqkLeqdidqk 128 
                  ++ e+l+ +l++ +++ + a + v e+++ l++ +++ ++     ++ +  +++   ei++lk++i +   ++rv  +   + + +i+kL+ +i+++
  KOO20944.1 1434 RQNEQLRGSLTKSNEQLRAAVTQVAELMSELAASKRQVEHLeleWRIANGAARDASAEIAKLKDEIAKLKDKLRVQAGASAASSDEIAKLKDEIAKL 1530
                  4456777777777777777777777777666666666665434367777888888889999999999999999999999999999999999999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1565 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1675  (0.0934241); expected 358.6 (0.02)
Passed bias filter:                      599  (0.0334096); expected 358.6 (0.02)
Passed Vit filter:                        90  (0.0050198); expected 17.9 (0.001)
Passed Fwd filter:                        43  (0.00239835); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 1.46u 0.31s 00:00:01.77 Elapsed: 00:00:00.54
# Mc/sec: 8758.28
//
Query:       KOO20945.1  [L=379]
Description: hypothetical protein Ctob_002177 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.011   14.7   3.0      0.016   14.2   3.0    1.2  1  MFS_1     Major Facilitator Superfamily


Domain annotation for each model (and alignments):
>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   3.0   8.8e-07     0.016      65     143 ..       5      86 ..       3     102 .. 0.61

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 8.8e-07
       MFS_1  65 lllglllfalglllllf..asslwlllvlrv...lqGlgagalfpagaaliadwfpkeergraigllsagfslGailgpllggl 143
                  +++l+l a++   ++f  a++  ++l + +   l+++++ +  +a  al+++++pke+ g a+++l + +s+  i+ pl g+ 
  KOO20945.1   5 AVISLALVASA-GNAAFesAHTR-FFLYAGLnlpLSAIAGNLNRTALSALFSKVVPKEDMGAALSVLDVLNSAVGIISPLYGPQ 86 
                 45555666666.33333212222.333333334677777777777777777777777777777777777777777777776665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (379 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       635  (0.0354175); expected 358.6 (0.02)
Passed bias filter:                      373  (0.0208043); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.27s 00:00:00.75 Elapsed: 00:00:00.44
# Mc/sec: 2570.30
//
Query:       KOO20946.1  [L=202]
Description: calcium-dependent protein kinase 13-like protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.6e-13   47.2   0.1    4.2e-05   22.8   0.0    2.4  2  EF-hand_1  EF hand
    1.5e-11   43.3   0.1      5e-05   22.9   0.0    2.3  2  EF-hand_6  EF-hand domain
    1.8e-10   41.1   0.1      3e-10   40.4   0.1    1.4  1  EF-hand_7  EF-hand domain pair
    5.5e-09   35.1   0.2     0.0011   18.4   0.1    2.3  2  EF-hand_5  EF hand
    0.00044   20.0   0.8     0.0092   15.8   0.1    2.1  2  EF-hand_8  EF-hand domain pair
  ------ inclusion threshold ------
        0.1   12.6   0.1       0.28   11.1   0.1    1.7  1  EF-hand_4  Cytoskeletal-regulatory complex EF hand
       0.94    9.8   4.4         10    6.4   0.1    2.1  2  THOC7      Tho complex subunit 7


Domain annotation for each model (and alignments):
>> EF-hand_1  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.8   0.0   1.7e-08   4.2e-05       2      27 ..      93     118 ..      92     120 .. 0.92
   2 !   22.4   0.1   2.2e-08   5.6e-05       3      27 ..     130     154 ..     128     155 .. 0.91

  Alignments for each domain:
  == domain 1  score: 22.8 bits;  conditional E-value: 1.7e-08
                 HHHHHHHHTTTSSSEEEHHHHHHHHH CS
   EF-hand_1   2 lkeiFrefDkDgdGkIdfeEfkellk 27 
                 l++iF+ +DkDg+G +d +E+k +l 
  KOO20946.1  93 LRKIFSGIDKDGSGALDPDELKVALI 118
                 89********************9985 PP

  == domain 2  score: 22.4 bits;  conditional E-value: 2.2e-08
                 HHHHHHHTTTSSSEEEHHHHHHHHH CS
   EF-hand_1   3 keiFrefDkDgdGkIdfeEfkellk 27 
                  +iF+++D D++G+++f+E++++++
  KOO20946.1 130 LKIFEKYDYDKSGTLEFSEYQSMIA 154
                 68*******************9985 PP

>> EF-hand_6  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.9   0.0     2e-08     5e-05       1      26 [.      92     117 ..      92     122 .. 0.90
   2 !   18.1   0.0   6.7e-07    0.0017       4      27 ..     131     154 ..     128     160 .. 0.90

  Alignments for each domain:
  == domain 1  score: 22.9 bits;  conditional E-value: 2e-08
   EF-hand_6   1 elreaFklfDkdgdGkidaeElrkal 26 
                 +lr++F  +Dkdg+G +d++El+ al
  KOO20946.1  92 RLRKIFSGIDKDGSGALDPDELKVAL 117
                 69********************9877 PP

  == domain 2  score: 18.1 bits;  conditional E-value: 6.7e-07
   EF-hand_6   4 eaFklfDkdgdGkidaeElrkalr 27 
                 ++F+++D+d++G++ ++E ++++ 
  KOO20946.1 131 KIFEKYDYDKSGTLEFSEYQSMIA 154
                 79****************999876 PP

>> EF-hand_7  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.4   0.1   1.2e-13     3e-10       2      70 ..      91     153 ..      90     154 .. 0.93

  Alignments for each domain:
  == domain 1  score: 40.4 bits;  conditional E-value: 1.2e-13
   EF-hand_7   2 eklkeaFkelDtdgdgyldkeellrllrkifqgagegsklsdeelellfkefDtdkdGvisfdEFlkly 70 
                 e+l+ +F  +D+dg+g ld++el+ +l       + g++ s+e + ++f++ D dk+G++ f+E++ ++
  KOO20946.1  91 ERLRKIFSGIDKDGSGALDPDELKVALI------RAGKDASEEVVLKIFEKYDYDKSGTLEFSEYQSMI 153
                 78999*******************8887......8888889999*********************9875 PP

>> EF-hand_5  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.4   0.1   4.2e-07    0.0011       1      22 [.      93     114 ..      93     118 .. 0.89
   2 !   14.7   0.0   6.3e-06     0.016       4      24 ..     132     152 ..     129     153 .. 0.89

  Alignments for each domain:
  == domain 1  score: 18.4 bits;  conditional E-value: 4.2e-07
                 HHHHHHHH-SS-SSCE-HHHHH CS
   EF-hand_5   1 lkdtFqaiDlNgDGkIskeELk 22 
                 l++ F+ iD++g+G ++++ELk
  KOO20946.1  93 LRKIFSGIDKDGSGALDPDELK 114
                 6788999**************8 PP

  == domain 2  score: 14.7 bits;  conditional E-value: 6.3e-06
                 HHHHH-SS-SSCE-HHHHHHH CS
   EF-hand_5   4 tFqaiDlNgDGkIskeELktl 24 
                  F++ D +++G++ ++E + +
  KOO20946.1 132 IFEKYDYDKSGTLEFSEYQSM 152
                 5****************9976 PP

>> EF-hand_8  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.7   0.1    0.0003      0.76      27      51 ..      91     116 ..      78     117 .. 0.79
   2 !   15.8   0.1   3.6e-06    0.0092       2      48 ..     105     149 ..     104     155 .. 0.91

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 0.0003
   EF-hand_8  27 e.vdilfrefDtdgdGkisfeEFcvl 51 
                 e ++ +f+ +D dg+G+++ +E  v 
  KOO20946.1  91 ErLRKIFSGIDKDGSGALDPDELKVA 116
                 447789*************9999876 PP

  == domain 2  score: 15.8 bits;  conditional E-value: 3.6e-06
   EF-hand_8   2 kgkItreelrril.rilglkkglseeevdilfrefDtdgdGkisfeEF 48 
                 +g ++++el+ +l r+ g+    see v  +f + D d++G++ f E+
  KOO20946.1 105 SGALDPDELKVALiRA-GKD--ASEEVVLKIFEKYDYDKSGTLEFSEY 149
                 6899************.866..***********************998 PP

>> EF-hand_4  Cytoskeletal-regulatory complex EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.1   0.00011      0.28       8      66 ..      89     150 ..      85     173 .. 0.74

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00011
   EF-hand_4   8 eikkyweifsglkpe.dnkltgd..kvapvlknskleedklekiwdladidedgkldfeefc 66 
                 ++++  +ifsg++++ +  l  d  kva +      +e+ + ki++  d d+ g+l+f e+ 
  KOO20946.1  89 DVERLRKIFSGIDKDgSGALDPDelKVALIRAGKDASEEVVLKIFEKYDYDKSGTLEFSEYQ 150
                 577888999999754167888772244444455667888999******************96 PP

>> THOC7  Tho complex subunit 7
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.9   1.7     0.024        63      52      95 ..      36      79 ..      34      83 .. 0.89
   2 ?    6.4   0.1    0.0039        10      46      78 ..     143     175 ..     132     181 .. 0.88

  Alignments for each domain:
  == domain 1  score: 3.9 bits;  conditional E-value: 0.024
       THOC7 52 felsierlqllakanerereryeaekeeieseieavreeieelk 95
                +e +i+++q+++++     ++ +++  e+++  + +r++  el+
  KOO20946.1 36 LEDEIAKMQASMDMALNVTQSAARQGLEMDERVSRARKKSRELE 79
                5778999****************999***********9999986 PP

  == domain 2  score: 6.4 bits;  conditional E-value: 0.0039
       THOC7  46 lldfaafelsierlqllakanerereryeaeke 78 
                 +l+f++++++i+  +++ k+  +e +r+e+ k+
  KOO20946.1 143 TLEFSEYQSMIADWDNVVKTIDEETARIERAKA 175
                 899************************998775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (202 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       846  (0.0471861); expected 358.6 (0.02)
Passed bias filter:                      636  (0.0354733); expected 358.6 (0.02)
Passed Vit filter:                        59  (0.00329076); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.44u 0.27s 00:00:00.71 Elapsed: 00:00:00.41
# Mc/sec: 1463.90
//
Query:       KOO20947.1  [L=465]
Description: hypothetical protein Ctob_002181 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.023   13.5   1.6      0.033   13.0   1.6    1.2  1  VKG_Carbox  Vitamin K-dependent gamma-carboxylase


Domain annotation for each model (and alignments):
>> VKG_Carbox  Vitamin K-dependent gamma-carboxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   1.6   1.9e-06     0.033      96     224 ..      68     203 ..      63     260 .. 0.72

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 1.9e-06
  VKG_Carbox  96 yYllgllallllflpanryfslDalknkki....kkksvprwnllilkfqlfivYfyAglaKlns...dWlegaaplklwlfskfkllligelleeeid 187
                  Yl+ +  +  +f  a+ ++  Da++  +i    +++ vp+ + +++++q+ + Y+ Ag  K+n+   dW  + ap+ + l+  + l+  g+l    ++
  KOO20947.1  68 IYLIAC-KMPCIFDSAHWAMQTDAVLLAAIllvpRRAVVPA-VEWVVRTQMGLFYLAAGFWKINTsflDWTVSCAPIFT-LSLAAYLP-EGALPPPLVH 162
                 555543.3444566777777777755555444434555555.56799*****************833356666555555.55555555.8999999999 PP

  VKG_Carbox 188 alivs..wfgllfDllivflLl..lkktRilalllvvvFhl 224
                 al+v   w++++ +++i+ lLl  +++ R +++ll+ v hl
  KOO20947.1 163 ALAVGapWMTIVGEMAIGALLLlpFRAARRMGVLLCAVLHL 203
                 99984449**********988744799*************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (465 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       449  (0.0250432); expected 358.6 (0.02)
Passed bias filter:                      223  (0.0124379); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.23s 00:00:00.69 Elapsed: 00:00:00.39
# Mc/sec: 3556.37
//
Query:       KOO20948.1  [L=587]
Description: hypothetical protein Ctob_002180 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.9e-05   24.1   0.0     0.0074   15.6   0.0    2.3  2  Frigida   Frigida-like protein


Domain annotation for each model (and alignments):
>> Frigida  Frigida-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.0   0.0   0.00033         6     154     205 ..     353     406 ..     344     433 .. 0.70
   2 !   15.6   0.0   4.1e-07    0.0074     181     222 ..     448     489 ..     443     497 .. 0.88

  Alignments for each domain:
  == domain 1  score: 6.0 bits;  conditional E-value: 0.00033
     Frigida 154 lklvvavarrkqapeLcrslgLseki..pdiieeLikkgkqieAVkfayafgLt 205
                 ++ + a+++ + a  L     L +    + + e+L++ ++   A +fa +fgL+
  KOO20948.1 353 VRSLLASNQLRAACVLVSRWKLHAHFepSQLLEHLVNAKMFSAAMRFAREFGLS 406
                 455566666777777777777765542257889999999999999999999985 PP

  == domain 2  score: 15.6 bits;  conditional E-value: 4.1e-07
     Frigida 181 diieeLikkgkqieAVkfayafgLtdkfsPvslLksylkesk 222
                 d+   L+  g++  A+k++++fg +++f+P++l+ s+l+   
  KOO20948.1 448 DVLRLLVGAGHHAIALKYVHKFGASERFPPQQLVSSCLEAEG 489
                 7778899******************************99755 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (587 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       326  (0.0181828); expected 358.6 (0.02)
Passed bias filter:                      252  (0.0140554); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.50u 0.24s 00:00:00.74 Elapsed: 00:00:00.38
# Mc/sec: 4574.16
//
Query:       KOO20949.1  [L=1555]
Description: u-box domain-containing protein 35-like protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    6.7e-24   84.7   0.0    1.3e-23   83.7   0.0    1.4  1  Pkinase         Protein kinase domain
    1.8e-20   72.9   0.0    5.1e-19   68.2   0.0    2.6  2  U-box           U-box domain
    1.1e-13   51.0   0.0    2.6e-13   49.9   0.0    1.5  1  Pkinase_Tyr     Protein tyrosine kinase
     0.0002   20.3   0.1    0.00099   18.0   0.0    2.0  2  Pkinase_fungal  Fungal protein kinase
    0.00043   20.4   0.0     0.0013   18.9   0.0    1.8  1  zf-NOSIP        Zinc-finger of nitric oxide synthase-interact
     0.0025   17.9   0.0     0.0096   16.0   0.0    2.0  1  DnaJ            DnaJ domain
  ------ inclusion threshold ------
       0.15   11.9   0.0       0.34   10.8   0.0    1.5  1  zf-Nse          Zinc-finger of the MIZ type in Nse subunit
        2.3    8.4   4.6        5.1    7.3   0.1    3.4  3  HR1             Hr1 repeat
          4    7.8  11.9          2    8.7   0.0    4.0  4  Muted           Organelle biogenesis, Muted-like protein


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   83.7   0.0   6.6e-27   1.3e-23     102     196 ..    1259    1371 ..    1246    1390 .. 0.91

  Alignments for each domain:
  == domain 1  score: 83.7 bits;  conditional E-value: 6.6e-27
                  HHHHHHHHHHHHHHHTTEE-SS-SGGGEEEETTTE...EEE-SGTTSEESSSSCS...............BCTTTSCGGGS-HHHHTTSCBSHHHHH CS
     Pkinase  102 kiakqilegleylHskgiiHrDlKpeNiLidekge...lKitDFGlakelesssk...............ltsfvgtseYlAPEvlkeneyskkvDv 180 
                   ia+ +++gl++lH  gi+HrD+Kp+N+L+++ ++    +i+DFG+a+ le + +                 +  gt  Y+APE lk+ + ++kvD 
  KOO20949.1 1259 IIASDVCRGLAFLHGLGIVHRDIKPANLLLQQVQQgllARIGDFGVARALEAEAQaagsgtmmtrtktwqGAQAAGTLAYMAPEYLKAPNSTPKVDS 1355
                  57889**************************66667899*************9999*********999988899*********************** PP

                  HHHHHHHHHHHHSS-S CS
     Pkinase  181 WslGvilyelltgkpp 196 
                  ++ G++l+ lltg+p 
  KOO20949.1 1356 FAFGLTLVVLLTGRPA 1371
                  *************974 PP

>> U-box  U-box domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.6   0.0      0.16   3.2e+02      39      69 ..      93     124 ..      82     126 .. 0.89
   2 !   68.2   0.0   2.6e-22   5.1e-19       2      66 ..    1487    1551 ..    1486    1554 .. 0.98

  Alignments for each domain:
  == domain 1  score: 1.6 bits;  conditional E-value: 0.16
                 SSB-TTT.-SB--GGGSEE-HHHHHHHHHHHH CS
       U-box  39 dktdPft.repltqdqlipnlelKekIdefle 69 
                 ++ dP+  r++  ++++ p ++l ++ +++++
  KOO20949.1  93 SPEDPVPnRAAAVEAMMAPVQALENALATWIK 124
                 68999965**********************97 PP

  == domain 2  score: 68.2 bits;  conditional E-value: 2.6e-22
                  SGGGB-TTT-SB-SSEEEETTTEEEEHHHHHHHHTT.SSB-TTT-SB--GGGSEE-HHHHHHHHH CS
       U-box    2 PdefldpitlelmkdPvilpsgvvvdrstiekhllsrdktdPftrepltqdqlipnlelKekIde 66  
                  P+ef++p++le+m dPv++++g +++r  ie++++  + ++P+t + l++ +l+pnl+lK++I++
  KOO20949.1 1487 PEEFCCPLSLEMMVDPVVAADGFTYERCHIERWIRGGGVSSPMTGQRLPHTKLTPNLTLKAMIKA 1551
                  9**************************************************************85 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.9   0.0   1.3e-16   2.6e-13     104     216 ..    1256    1385 ..    1248    1405 .. 0.79

  Alignments for each domain:
  == domain 1  score: 49.9 bits;  conditional E-value: 1.3e-16
                   HHHHHHHHHHHHHHHHHHTTEEEST-SGGGEEEEE...TTEEEE-STTTHEETTTSSEE............EETTSSTSGGGGS-HHHHHHSEEEH CS
  Pkinase_Tyr  104 dllsfalqvAkGmeyLeskklvHrdlaarNvLlse...nkvvkisDfGLardiekddey............vkkeeaklpvkWmapEslkekkfts 184 
                   + + +a +v++G+++L+   +vHrd+   N Ll++   + +++i+DfG+ar++e + +              +  +a   + +mapE lk+ + t 
   KOO20949.1 1256 QRMIIASDVCRGLAFLHGLGIVHRDIKPANLLLQQvqqGLLARIGDFGVARALEAEAQAagsgtmmtrtktWQGAQAAGTLAYMAPEYLKAPNSTP 1351
                   6677999*************************998655779***********977766555554443322223345567899************** PP

                   HHHHHHHHHHHHHHHTT..SSGTTTTSHHHHHHH CS
  Pkinase_Tyr  185 ksDvWsfGvllwEiftl..gespypglkneevle 216 
                   k D ++fG +l  ++t   +e+p++g + e++++
   KOO20949.1 1352 KVDSFAFGLTLVVLLTGrpAEKPVQGPSGETFAN 1385
                   ***********99988322456666666666655 PP

>> Pkinase_fungal  Fungal protein kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.6      0.38   7.5e+02     200     275 ..     186     258 ..     176     345 .. 0.53
   2 !   18.0   0.0     5e-07   0.00099     308     388 ..    1257    1346 ..    1149    1358 .. 0.88

  Alignments for each domain:
  == domain 1  score: -1.4 bits;  conditional E-value: 0.38
  Pkinase_fungal 200 egvarlvahedveekdddi.aeiRkgldvtkaekfrskrkvvsssssqelsskaevklkksesskkvekrsvdssv.s 275
                      ++ar+v+h++v+   d++ ++  ++   + a +f ++  ++ ++  +   ++a+ ++   +++ +  k++++ ++ +
      KOO20949.1 186 AELARHVNHNTVT---DTTlEQHLEQCAERLAADFAKHVMTLPAQYDKGRVQQARDAKG--RAEAQLAKARSEVKSlH 258
                     5789999999998...4444333333333333344443332222222211111111111..11112222222222222 PP

  == domain 2  score: 18.0 bits;  conditional E-value: 5e-07
  Pkinase_fungal  308 llealrDaIkghrsLflkagiLHrDiSenNilitdskkegerkglLiDLDlakelsddssesga............rertGTleFmaievlkg 388 
                       +    D+ +g+  L+   gi+HrDi   N+l+   + +++    + D+ +a  l+ + +++g+             +  GTl++ma e lk+
      KOO20949.1 1257 RMIIASDVCRGLAFLH-GLGIVHRDIKPANLLLQ--QVQQGLLARIGDFGVARALEAEAQAAGSgtmmtrtktwqgAQAAGTLAYMAPEYLKA 1346
                      455568999*******.*****************..56667778888*******998777775544555555555577*********999985 PP

>> zf-NOSIP  Zinc-finger of nitric oxide synthase-interacting protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.9   0.0   6.3e-07    0.0013      42      71 ..    1491    1520 ..    1474    1522 .. 0.90

  Alignments for each domain:
  == domain 1  score: 18.9 bits;  conditional E-value: 6.3e-07
    zf-NOSIP   42 ccslslqacrdpvltedgylyekeaileyi 71  
                  cc lsl+   dpv++ dg+ ye+  i ++i
  KOO20949.1 1491 CCPLSLEMMVDPVVAADGFTYERCHIERWI 1520
                  ***********************9887766 PP

>> DnaJ  DnaJ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.0   4.8e-06    0.0096       6      33 ..     554     581 ..     552     605 .. 0.82

  Alignments for each domain:
  == domain 1  score: 16.0 bits;  conditional E-value: 4.8e-06
                 HTSSTTG-HHHHHHHHHHHHHHHSTTTS CS
        DnaJ   6 LgvskdasedeIkkaYrklalkyHPDkn 33 
                 Lg++  ++ +++ +aYr+l++ +HPD+ 
  KOO20949.1 554 LGLNDVSTLSDVNAAYRRLSRVHHPDRG 581
                 899999********************97 PP

>> zf-Nse  Zinc-finger of the MIZ type in Nse subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   0.00017      0.34      11      50 ..    1489    1526 ..    1484    1533 .. 0.81

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00017
                  XSB-TTTSSB-SSEEEESSS--EEEHHHHHHHCTTTS-EE CS
      zf-Nse   11 slkCPltlqpfeePvtskkCpHvFEreaIlelikrkktvk 50  
                  +++CPl+l+ +++Pv       ++Er  I++ i r   v 
  KOO20949.1 1489 EFCCPLSLEMMVDPVVAAD-GFTYERCHIERWI-RGGGVS 1526
                  689************9876.7899999999999.555555 PP

>> HR1  Hr1 repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.3   0.1    0.0025       5.1      25      56 ..     227     259 ..     221     270 .. 0.88
   2 ?    0.4   0.4      0.36   7.2e+02      17      49 ..     310     350 ..     307     371 .. 0.73
   3 ?   -2.9   0.0       3.8   7.5e+03      46      61 ..     918     933 ..     916     939 .. 0.80

  Alignments for each domain:
  == domain 1  score: 7.3 bits;  conditional E-value: 0.0025
         HR1  25 alesk.ktqnkkvrqeaeselsesnskielLre 56 
                 +++++  +q ++++ +ae++l +++s+++ L++
  KOO20949.1 227 QYDKGrVQQARDAKGRAEAQLAKARSEVKSLHD 259
                 578887788999*******************97 PP

  == domain 2  score: 0.4 bits;  conditional E-value: 0.36
         HR1  17 eGAenllrale......skktqnkk.......vrqeaeselsesns 49 
                  GAe  l al+                     +r+ ae+els s++
  KOO20949.1 310 TGAEERLAALQkkgakvC-----ALteeslgeQRRHAEAELSASQR 350
                 577777777774433220.....2233345669999*****99987 PP

  == domain 3  score: -2.9 bits;  conditional E-value: 3.8
         HR1  46 esnskielLreqLeel 61 
                 e+ +++e L eqL e 
  KOO20949.1 918 EATRRVERLGEQLDEH 933
                 8999********9775 PP

>> Muted  Organelle biogenesis, Muted-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.2      0.82   1.6e+03      49     140 ..     199     229 ..     178     273 .. 0.49
   2 ?    3.6   0.9      0.04        79      65     133 ..     307     375 ..     270     383 .. 0.81
   3 ?   -0.4   0.2      0.68   1.3e+03      48      91 ..     923     978 ..     900    1018 .. 0.47
   4 ?    8.7   0.0     0.001         2       6      39 ..    1442    1475 ..    1437    1484 .. 0.90

  Alignments for each domain:
  == domain 1  score: -0.7 bits;  conditional E-value: 0.82
       Muted  49 nelkeqllpkclesmkenLselnkkleaalekverllqkeleeekrkseqlqekeeerkaeweeflkelqekkeevDeefeekveelkekYs 140
                   + eq l++c e+++ +  +                                                              v +l ++Y+
  KOO20949.1 199 DTTLEQHLEQCAERLAADFAK-------------------------------------------------------------HVMTLPAQYD 229
                 223333333333333333333.............................................................3333333332 PP

  == domain 2  score: 3.6 bits;  conditional E-value: 0.04
       Muted  65 enLselnkkleaalekverllqkeleeekrkseqlqekeeerkaeweeflkelqekkeevDeefeekve 133
                  +L+  +++l a+++k  ++    +e+  ++ ++ +++  ++++  +++  ++  +++e+D+ ++e+ e
  KOO20949.1 307 ASLTGAEERLAALQKKGAKVCALTEESLGEQRRHAEAELSASQRIFDSVAADMMARERELDQVHSEASE 375
                 45777778999999999999888777777777888888899999********************99865 PP

  == domain 3  score: -0.4 bits;  conditional E-value: 0.68
       Muted  48 vnelkeqllpkclesmkenLseln.............kkleaalekverllqkelee 91 
                 v+ l eql +++++  ++ L +++             +k  ++  k++r++ + +++
  KOO20949.1 923 VERLGEQLDEHIKTHASDALDSTElkelhrvladmlhQKAAELGAKTKRVQAE-AKA 978
                 33333333333333333333333310000111111122233333333333333.222 PP

  == domain 4  score: 8.7 bits;  conditional E-value: 0.001
       Muted    6 eiysRLlDhRpviqgEikyfvkeFEekRgdreve 39  
                   i  R l+hR+   +E++ +v+e+E  R   e +
  KOO20949.1 1442 GIAGRCLEHRARPRAEVRDLVDELERARHTAETS 1475
                  6889************************999875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1555 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1082  (0.0603492); expected 358.6 (0.02)
Passed bias filter:                      539  (0.030063); expected 358.6 (0.02)
Passed Vit filter:                        55  (0.00306766); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.99u 0.30s 00:00:01.29 Elapsed: 00:00:00.46
# Mc/sec: 10235.15
//
Query:       KOO20950.1  [L=205]
Description: hypothetical protein Ctob_000396 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (205 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       299  (0.0166769); expected 358.6 (0.02)
Passed bias filter:                      266  (0.0148363); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.41u 0.25s 00:00:00.65 Elapsed: 00:00:00.43
# Mc/sec: 1446.77
//
Query:       KOO20951.1  [L=137]
Description: prefoldin subunit 4 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    7.4e-21   74.1   0.2    8.6e-21   73.9   0.2    1.1  1  Prefoldin_2  Prefoldin subunit
     0.0012   19.1   1.9      0.019   15.2   0.5    2.1  2  Tup_N        Tup N-terminal
  ------ inclusion threshold ------
      0.062   12.4   0.9       0.88    8.6   0.0    2.0  2  RmuC         RmuC family
      0.075   13.0   3.8       0.12   12.3   1.7    1.9  2  Prefoldin    Prefoldin subunit


Domain annotation for each model (and alignments):
>> Prefoldin_2  Prefoldin subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   73.9   0.2   1.9e-24   8.6e-21       1     105 [.      27     131 ..      27     132 .. 0.98

  Alignments for each domain:
  == domain 1  score: 73.9 bits;  conditional E-value: 1.9e-24
                  HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-TT--EEEEETTEEEEE-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
  Prefoldin_2   1 qelinkfqqlqqqlqqlaqqikqletqlkelelvleelelldedtkvyklvGdvlvkqdkeevkeeLeerketlekeiktlekqleklekeleelkee 98 
                  q+ in+f +l+ ++++++ ++k ++ + + l+++++e+ l+d+d +v +l G+++++ +k+++ e+Le++k +++++i++ + +l +++++l++lk +
   KOO20951.1  27 QDCINQFGRLNGRMHDIEDELKAAQSKYELLDDASNEIILADDDVPVRYLFGECFFELSKDSTDEMLEKQKSEVQEQIDSHKAELLTIRETLADLKGK 124
                  7789********************************************************************************************** PP

                  HHCCTS- CS
  Prefoldin_2  99 lqkklqq 105
                  l+ ++++
   KOO20951.1 125 LYGRFGK 131
                  *****98 PP

>> Tup_N  Tup N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.1   0.0     0.026   1.2e+02      23      63 ..      13      55 ..       6      58 .. 0.84
   2 !   15.2   0.5   4.3e-06     0.019      21      52 ..      91     122 ..      81     126 .. 0.87

  Alignments for each domain:
  == domain 1  score: 3.1 bits;  conditional E-value: 0.026
       Tup_N 23 lkaqkdeyelk..iqsqiqElqqirqtlyeLeeahrkikqqYE 63
                ++++ +++e +   q +i+ + ++   ++++e + ++ + +YE
  KOO20951.1 13 CRNEDKDVEVRreDQDCINQFGRLNGRMHDIEDELKAAQSKYE 55
                6778888888844566799999999999999999999999998 PP

  == domain 2  score: 15.2 bits;  conditional E-value: 4.3e-06
       Tup_N  21 sslkaqkdeyelkiqsqiqElqqirqtlyeLe 52 
                 ++l++qk e+  +i s+ +El +ir+tl +L+
  KOO20951.1  91 EMLEKQKSEVQEQIDSHKAELLTIRETLADLK 122
                 46899**************************8 PP

>> RmuC  RmuC family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.6   0.0    0.0002      0.88     228     268 ..      19      59 ..      12      68 .. 0.83
   2 ?    2.6   0.2     0.013        60     222     255 ..      91     124 ..      83     134 .. 0.52

  Alignments for each domain:
  == domain 1  score: 8.6 bits;  conditional E-value: 0.0002
        RmuC 228 aeeiaellgelydkfekfgedleklgkklekaqksydkavk 268
                   e+ ++ ++  ++f+++  ++++++++l+ aq++y+ + +
  KOO20951.1  19 DVEVRREDQDCINQFGRLNGRMHDIEDELKAAQSKYELLDD 59 
                 56899999999*************************98443 PP

  == domain 2  score: 2.6 bits;  conditional E-value: 0.013
        RmuC 222 eaqeknaeeiaellgelydkfekfgedleklgkk 255
                 e +ek+ +e++e++ + + ++ ++ e+l +l+ k
  KOO20951.1  91 EMLEKQKSEVQEQIDSHKAELLTIRETLADLKGK 124
                 3344444444444444444444444444444433 PP

>> Prefoldin  Prefoldin subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.8   0.0     0.096   4.3e+02      89     105 ..      43      59 ..      31      82 .. 0.52
   2 ?   12.3   1.7   2.7e-05      0.12      70     110 ..      81     121 ..      76     126 .. 0.91

  Alignments for each domain:
  == domain 1  score: 0.8 bits;  conditional E-value: 0.096
                 HHHHHHHHHHHHHHHHH CS
   Prefoldin  89 lekqlekleeeleklkd 105
                 +e+ l+  + + e l d
  KOO20951.1  43 IEDELKAAQSKYELLDD 59 
                 33333333333333333 PP

  == domain 2  score: 12.3 bits;  conditional E-value: 2.7e-05
                 EEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
   Prefoldin  70 yveksleeAiellkkkleelekqlekleeeleklkdqittl 110
                 + e+s++   e l+k+++e+++q++++++el  +++++  l
  KOO20951.1  81 FFELSKDSTDEMLEKQKSEVQEQIDSHKAELLTIRETLADL 121
                 6799*******************************998766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (137 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1112  (0.0620224); expected 358.6 (0.02)
Passed bias filter:                      648  (0.0361426); expected 358.6 (0.02)
Passed Vit filter:                        80  (0.00446204); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.44u 0.24s 00:00:00.68 Elapsed: 00:00:00.39
# Mc/sec: 1053.41
//
Query:       KOO20952.1  [L=348]
Description: hypothetical protein Ctob_000395 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (348 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       315  (0.0175693); expected 358.6 (0.02)
Passed bias filter:                      265  (0.0147805); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.46u 0.25s 00:00:00.71 Elapsed: 00:00:00.43
# Mc/sec: 2446.33
//
Query:       KOO20953.1  [L=874]
Description: nb-arc domain protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.3e-66  218.9  41.0    8.7e-13   47.7   0.1    8.7  8  TPR_10    Tetratricopeptide repeat
    3.8e-54  180.9  39.6    1.1e-16   60.8   2.7    5.9  5  TPR_12    Tetratricopeptide repeat
    2.7e-17   61.5  16.6     0.0011   19.0   0.2    7.9  7  TPR_8     Tetratricopeptide repeat
    2.9e-17   63.1  25.5    5.7e-11   42.4   2.1    4.0  3  TPR_MalT  MalT-like TPR region
    4.9e-17   60.6  33.8     0.0012   18.8   0.1    8.5  8  TPR_7     Tetratricopeptide repeat
      1e-15   56.5  28.4     0.0062   16.6   0.2    8.5  8  TPR_2     Tetratricopeptide repeat
    4.5e-15   54.8  19.7     0.0008   19.1   0.1    8.1  8  TPR_1     Tetratricopeptide repeat
    6.3e-13   48.0  27.7       0.07   13.8   0.5    9.1  7  TPR_4     Tetratricopeptide repeat
    6.9e-10   38.6   8.6       0.69   10.4   0.0    7.6  7  TPR_17    Tetratricopeptide repeat
    2.3e-09   36.5   3.5     0.0021   18.0   0.0    3.6  3  LRR_6     Leucine Rich repeat
      2e-08   34.7  51.5    1.4e-05   25.6   0.8    7.6  6  TPR_16    Tetratricopeptide repeat
    1.8e-07   31.4  44.8       0.14   13.1   0.1    9.5  8  TPR_14    Tetratricopeptide repeat
    0.00041   20.8  32.4       0.11   13.0   0.5    5.3  4  TPR_19    Tetratricopeptide repeat
  ------ inclusion threshold ------
      0.062   13.6   0.2         64    3.9   0.0    4.0  3  Osmo_CC   Osmosensory transporter coiled coil
       0.21   11.7   4.6        8.6    6.5   0.1    4.9  5  MIT       MIT (microtubule interacting and transport) domain
       0.29   10.8  20.3          7    6.4   0.2    7.0  8  TPR_11    TPR repeat
       0.52   10.0  14.9      0.071   12.8   4.2    3.9  4  TPR_21    Tetratricopeptide repeat-like domain
        2.8    8.2  29.3        0.2   11.9   2.3    6.2  6  TPR_5     Tetratrico peptide repeat
        5.8    7.4   5.8        1.4    9.3   0.1    3.1  3  PPR       PPR repeat


Domain annotation for each model (and alignments):
>> TPR_10  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.2   0.5     0.022        20      21      42 .]     504     525 ..     497     525 .. 0.89
   2 !   25.2   0.2   1.1e-08   1.1e-05       1      40 [.     526     565 ..     526     567 .. 0.94
   3 !   43.2   0.1   2.4e-14   2.3e-11       1      41 [.     568     608 ..     568     609 .. 0.97
   4 !   31.7   1.5     1e-10   9.5e-08       1      42 []     610     651 ..     610     651 .. 0.97
   5 !   34.8   0.5   1.1e-11     1e-08       1      42 []     652     693 ..     652     693 .. 0.97
   6 !   38.3   1.0   8.2e-13   7.7e-10       1      41 [.     694     734 ..     694     735 .. 0.96
   7 !   47.7   0.1   9.2e-16   8.7e-13       1      42 []     736     777 ..     736     777 .. 0.98
   8 !   18.1   0.2   1.9e-06    0.0018       1      40 [.     778     817 ..     778     819 .. 0.91

  Alignments for each domain:
  == domain 1  score: 5.2 bits;  conditional E-value: 0.022
      TPR_10  21 AealleealairrrllGpdHPd 42 
                 A  l++eala +r+ lG+ H d
  KOO20953.1 504 AAVLYREALAQCREKLGDRHED 525
                 8889**************9965 PP

  == domain 2  score: 25.2 bits;  conditional E-value: 1.1e-08
      TPR_10   1 tAsslnNLanalrqrgrydeAealleealairrrllGpdH 40 
                 t++s nNLa++l ++ +++eA +ll eal++ r+++Gp H
  KOO20953.1 526 TLTSINNLAMLLLAQDELEEAGQLLCEALDASRETFGPMH 565
                 89***********************************754 PP

  == domain 3  score: 43.2 bits;  conditional E-value: 2.4e-14
      TPR_10   1 tAsslnNLanalrqrgrydeAealleealairrrllGpdHP 41 
                 t+ s++NL+ ++ + g+++eAe+l++eal+  r++lG+dH 
  KOO20953.1 568 TLVSMTNLGSLYKNAGELEEAEKLYREALDGARKTLGDDHH 608
                 789*************************************6 PP

  == domain 4  score: 31.7 bits;  conditional E-value: 1e-10
      TPR_10   1 tAsslnNLanalrqrgrydeAealleealairrrllGpdHPd 42 
                 t++sl  La++l+ rg++++A+ l+ eala+ rrllG+ H d
  KOO20953.1 610 TLASLYLLAMLLHTRGELEAARPLYVEALAASRRLLGDTHND 651
                 8999************************************76 PP

  == domain 5  score: 34.8 bits;  conditional E-value: 1.1e-11
      TPR_10   1 tAsslnNLanalrqrgrydeAealleealairrrllGpdHPd 42 
                 t+ s nNL+ + +++g+ d+A al++eala+rr +lG+ HPd
  KOO20953.1 652 TLISINNLGGLMQALGDVDAAAALYREALAARRTALGDMHPD 693
                 67799************************************8 PP

  == domain 6  score: 38.3 bits;  conditional E-value: 8.2e-13
      TPR_10   1 tAsslnNLanalrqrgrydeAealleealairrrllGpdHP 41 
                 t+ s nNLa +l+++g++++A al++eala+rr++lG+ HP
  KOO20953.1 694 TLISINNLASLLQETGELEGASALYREALAARRATLGNRHP 734
                 67799***********************************9 PP

  == domain 7  score: 47.7 bits;  conditional E-value: 9.2e-16
      TPR_10   1 tAsslnNLanalrqrgrydeAealleealairrrllGpdHPd 42 
                 t +slnNL+ +l +rg++++Ae ll+eala +r+ lG++HPd
  KOO20953.1 736 TITSLNNLGTLLKARGDLEGAEPLLREALASCREELGDEHPD 777
                 789**************************************9 PP

  == domain 8  score: 18.1 bits;  conditional E-value: 1.9e-06
      TPR_10   1 tAsslnNLanalrqrgrydeAealleealairrrllGpdH 40 
                 t+ssl NL+++l +rg++++A +ll+e l ++ + +G  H
  KOO20953.1 778 TLSSLYNLGILLEERGDLEGAAKLLREELHACTARYGSGH 817
                 89************************98888888888887 PP

>> TPR_12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.6   3.8   1.6e-10   1.5e-07      21      76 ..     503     558 ..     497     559 .. 0.93
   2 !   53.2   5.5     3e-17   2.8e-14       5      75 ..     571     641 ..     567     642 .. 0.94
   3 !   49.4   6.7   4.5e-16   4.2e-13       5      76 ..     613     684 ..     611     685 .. 0.95
   4 !   60.8   2.7   1.2e-19   1.1e-16       2      77 .]     694     769 ..     693     769 .. 0.96
   5 !   44.0   1.2   2.2e-14     2e-11      15      72 ..     749     806 ..     747     811 .. 0.94

  Alignments for each domain:
  == domain 1  score: 31.6 bits;  conditional E-value: 1.6e-10
      TPR_12  21 eAlellekaleiarrllGpdhpltattlrnLgrlyralgryeeAlelleealaiae 76 
                  A  l+++al+++r+ lG+ h++t+t+ +nL++l++a++++eeA +ll eal++ +
  KOO20953.1 503 TAAVLYREALAQCREKLGDRHEDTLTSINNLAMLLLAQDELEEAGQLLCEALDASR 558
                 56669***********************************************9877 PP

  == domain 2  score: 53.2 bits;  conditional E-value: 3e-17
      TPR_12   5 alnnlaavlrrlgrydeAlellekaleiarrllGpdhpltattlrnLgrlyralgryeeAlelleealaia 75 
                 +++nl++++  +g+++eA++l+++al+ ar++lG+dh+ t+++l+ L++l++ +g++e+A+ l+ eala+ 
  KOO20953.1 571 SMTNLGSLYKNAGELEEAEKLYREALDGARKTLGDDHHMTLASLYLLAMLLHTRGELEAARPLYVEALAAS 641
                 456*****************************************************************975 PP

  == domain 3  score: 49.4 bits;  conditional E-value: 4.5e-16
      TPR_12   5 alnnlaavlrrlgrydeAlellekaleiarrllGpdhpltattlrnLgrlyralgryeeAlelleealaiae 76 
                 +l+ la++l+ +g+++ A+ l+ +al++ rrllG++h +t+++ +nLg l +alg+ ++A +l++eala+++
  KOO20953.1 613 SLYLLAMLLHTRGELEAARPLYVEALAASRRLLGDTHNDTLISINNLGGLMQALGDVDAAAALYREALAARR 684
                 4559*****************************************************************987 PP

  == domain 4  score: 60.8 bits;  conditional E-value: 1.2e-19
      TPR_12   2 vatalnnlaavlrrlgrydeAlellekaleiarrllGpdhpltattlrnLgrlyralgryeeAlelleealaiaek 77 
                 ++++ nnla++l++ g+++ A +l+++al+++r++lG  hp t+t+l+nLg+l+ a+g++e A+ ll+eala +++
  KOO20953.1 694 TLISINNLASLLQETGELEGASALYREALAARRATLGNRHPRTITSLNNLGTLLKARGDLEGAEPLLREALASCRE 769
                 678889******************************************************************9885 PP

  == domain 5  score: 44.0 bits;  conditional E-value: 2.2e-14
      TPR_12  15 rlgrydeAlellekaleiarrllGpdhpltattlrnLgrlyralgryeeAlelleeal 72 
                 ++g+++ A+ ll++al+ +r+ lG++hp+t+++l+nLg+l++++g++e A +ll+e l
  KOO20953.1 749 ARGDLEGAEPLLREALASCREELGDEHPDTLSSLYNLGILLEERGDLEGAAKLLREEL 806
                 79****************************************************9865 PP

>> TPR_8  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.7   0.1    0.0049       4.6       3      33 ..     529     559 ..     527     560 .. 0.91
   2 !   19.0   0.2   1.2e-06    0.0011       4      29 ..     572     597 ..     570     601 .. 0.93
   3 !    9.5   0.1    0.0013       1.3       3      31 ..     613     641 ..     611     643 .. 0.91
   4 ?    6.6   0.0     0.011        11       5      31 ..     657     683 ..     655     685 .. 0.86
   5 !   10.6   0.1   0.00056      0.53       5      32 ..     699     726 ..     697     728 .. 0.91
   6 !    8.4   0.0    0.0029       2.7       3      29 ..     739     765 ..     737     769 .. 0.91
   7 ?    4.8   0.1     0.042        40       2      25 ..     780     803 ..     779     804 .. 0.89

  Alignments for each domain:
  == domain 1  score: 7.7 bits;  conditional E-value: 0.0049
                 HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH CS
       TPR_8   3 ayynlgsiylklgdyeeAkeyyekaleldpd 33 
                 + +nl++++l + ++eeA + + +al+++++
  KOO20953.1 529 SINNLAMLLLAQDELEEAGQLLCEALDASRE 559
                 568***********************99875 PP

  == domain 2  score: 19.0 bits;  conditional E-value: 1.2e-06
                 HHHHHHHHHHTT-HHHHHHHHHHHHH CS
       TPR_8   4 yynlgsiylklgdyeeAkeyyekale 29 
                 + nlgs+y++ g++eeA++ y++al+
  KOO20953.1 572 MTNLGSLYKNAGELEEAEKLYREALD 597
                 679*********************95 PP

  == domain 3  score: 9.5 bits;  conditional E-value: 0.0013
                 HHHHHHHHHHHTT-HHHHHHHHHHHHHHH CS
       TPR_8   3 ayynlgsiylklgdyeeAkeyyekaleld 31 
                 ++y+l++++++ g++e+A   y +al ++
  KOO20953.1 613 SLYLLAMLLHTRGELEAARPLYVEALAAS 641
                 79**********************99765 PP

  == domain 4  score: 6.6 bits;  conditional E-value: 0.011
                 HHHHHHHHHTT-HHHHHHHHHHHHHHH CS
       TPR_8   5 ynlgsiylklgdyeeAkeyyekaleld 31 
                 +nlg + + lgd ++A + y++al ++
  KOO20953.1 657 NNLGGLMQALGDVDAAAALYREALAAR 683
                 678888899**************9765 PP

  == domain 5  score: 10.6 bits;  conditional E-value: 0.00056
                 HHHHHHHHHTT-HHHHHHHHHHHHHHHH CS
       TPR_8   5 ynlgsiylklgdyeeAkeyyekaleldp 32 
                 +nl+s+++++g++e A + y++al +++
  KOO20953.1 699 NNLASLLQETGELEGASALYREALAARR 726
                 79*********************98776 PP

  == domain 6  score: 8.4 bits;  conditional E-value: 0.0029
                 HHHHHHHHHHHTT-HHHHHHHHHHHHH CS
       TPR_8   3 ayynlgsiylklgdyeeAkeyyekale 29 
                 +++nlg +++  gd+e A+  +++al 
  KOO20953.1 739 SLNNLGTLLKARGDLEGAEPLLREALA 765
                 799**********************95 PP

  == domain 7  score: 4.8 bits;  conditional E-value: 0.042
                 CHHHHHHHHHHHTT-HHHHHHHHH CS
       TPR_8   2 eayynlgsiylklgdyeeAkeyye 25 
                 +++ynlg ++++ gd+e A + ++
  KOO20953.1 780 SSLYNLGILLEERGDLEGAAKLLR 803
                 589**************9998876 PP

>> TPR_MalT  MalT-like TPR region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.6       1.6   1.5e+03     257     292 ..     374     409 ..     365     456 .. 0.70
   2 !   30.1   8.1   3.2e-10     3e-07      39     155 ..     526     644 ..     501     656 .. 0.77
   3 !   42.4   2.1     6e-14   5.7e-11      43     187 ..     656     805 ..     642     832 .. 0.83

  Alignments for each domain:
  == domain 1  score: -1.8 bits;  conditional E-value: 1.6
    TPR_MalT 257 deAlellerLlkaaeelgrvrslieiliLqalalqa 292
                 +++++l +++ ++a ++gr   +++++ L   al  
  KOO20953.1 374 AAVEQLCTSIAATASRHGRLANRVQVMSLDGNALTN 409
                 566777778888888888888777777775554443 PP

  == domain 2  score: 30.1 bits;  conditional E-value: 3.2e-10
    TPR_MalT  39 riaatavlGeasllqGdleaAlqalqeaeklarqa.dslhv.allallqqaeilvaqGrLheAletyeqalqlateqglqqlplvgfllvlladllyEw 135
                  ++   +l+   l q +le+A q l ea +++r+  + +h+ +l++++ ++ ++   G+L+eA+++y++al  a+++ +    +    l lla ll+ +
  KOO20953.1 526 TLTSINNLAMLLLAQDELEEAGQLLCEALDASRETfGPMHQhTLVSMTNLGSLYKNAGELEEAEKLYREALDGARKTLGDDHHMTLASLYLLAMLLHTR 624
                 333334555566779999999999999999886542666887999999999999999999999999999999999999999999999999999999999 PP

    TPR_MalT 136 ndLeeAeqhlqeGielleql 155
                 ++Le+A+    e+++ +++l
  KOO20953.1 625 GELEAARPLYVEALAASRRL 644
                 99999999999999988886 PP

  == domain 3  score: 42.4 bits;  conditional E-value: 6e-14
    TPR_MalT  43 tavlGeasllqGdleaAlqalqeaekl.arqadslhv.allallqqaeilvaqGrLheAletyeqalqlateqglqqlplvgfllvlladllyEwndLe 139
                   +lG+ ++  Gd++aA + ++ea ++   + + +h  +l ++  +a +l++ G+L+ A  +y++al+  + + + + p     l  l+ ll  ++dLe
  KOO20953.1 656 INNLGGLMQALGDVDAAAALYREALAArRTALGDMHPdTLISINNLASLLQETGELEGASALYREALAARRATLGNRHPRTITSLNNLGTLLKARGDLE 754
                 56899*****************9887522344555444*****************************************999999************** PP

    TPR_MalT 140 eAeqhlqeGielleql...epeaaldayvllarialaqGdleeAetlleka 187
                 +Ae  l+e+++ +++    e   +l ++  l  +   +Gdle+A++ll++ 
  KOO20953.1 755 GAEPLLREALASCREElgdEHPDTLSSLYNLGILLEERGDLEGAAKLLREE 805
                 ***********88885453234456666667777778***********986 PP

>> TPR_7  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.7   0.1      0.71   6.7e+02       4      16 ..     511     523 ..     502     524 .. 0.76
   2 ?    0.2   0.2         1   9.9e+02       1      24 [.     529     552 ..     529     562 .. 0.80
   3 !   18.8   0.1   1.2e-06    0.0012       3      30 ..     573     601 ..     571     606 .. 0.81
   4 ?    5.6   0.5      0.02        19       1      31 [.     613     643 ..     613     648 .. 0.85
   5 !   14.3   0.2   3.2e-05      0.03       1      31 [.     655     685 ..     655     690 .. 0.88
   6 !   14.1   0.6   3.9e-05     0.036       1      32 [.     697     728 ..     697     732 .. 0.89
   7 !   14.1   0.1   3.9e-05     0.037       1      34 [.     739     772 ..     739     774 .. 0.93
   8 !   11.8   0.2   0.00021      0.19       1      29 [.     781     807 ..     781     821 .. 0.90

  Alignments for each domain:
  == domain 1  score: 0.7 bits;  conditional E-value: 0.71
       TPR_7   4 nLarlysrlGdye 16 
                 +La+++++lGd+ 
  KOO20953.1 511 ALAQCREKLGDRH 523
                 6888888888876 PP

  == domain 2  score: 0.2 bits;  conditional E-value: 1
       TPR_7   1 aLlnLarlysrlGdyeeAielyeq 24 
                 +++nLa l  ++ + eeA +l+ +
  KOO20953.1 529 SINNLAMLLLAQDELEEAGQLLCE 552
                 679**************9777655 PP

  == domain 3  score: 18.8 bits;  conditional E-value: 1.2e-06
       TPR_7   3 lnLarlysrlGdyeeAielyeqsL.altk 30 
                  nL++ly + G+ eeA++ly+++L + +k
  KOO20953.1 573 TNLGSLYKNAGELEEAEKLYREALdGARK 601
                 7*********************8844444 PP

  == domain 4  score: 5.6 bits;  conditional E-value: 0.02
       TPR_7   1 aLlnLarlysrlGdyeeAielyeqsLaltkd 31 
                 +L+ La l + +G+ e A  ly ++La  ++
  KOO20953.1 613 SLYLLAMLLHTRGELEAARPLYVEALAASRR 643
                 6999********************9966555 PP

  == domain 5  score: 14.3 bits;  conditional E-value: 3.2e-05
       TPR_7   1 aLlnLarlysrlGdyeeAielyeqsLaltkd 31 
                 +++nL+ l ++lGd + A+ ly+++La ++ 
  KOO20953.1 655 SINNLGGLMQALGDVDAAAALYREALAARRT 685
                 689*********************9987765 PP

  == domain 6  score: 14.1 bits;  conditional E-value: 3.9e-05
       TPR_7   1 aLlnLarlysrlGdyeeAielyeqsLaltkdp 32 
                 +++nLa+l ++ G+ e A  ly+++La +++ 
  KOO20953.1 697 SINNLASLLQETGELEGASALYREALAARRAT 728
                 689*********************99988765 PP

  == domain 7  score: 14.1 bits;  conditional E-value: 3.9e-05
       TPR_7   1 aLlnLarlysrlGdyeeAielyeqsLaltkdped 34 
                 +L+nL+ l  ++Gd e A+ l++++La ++++++
  KOO20953.1 739 SLNNLGTLLKARGDLEGAEPLLREALASCREELG 772
                 79************************99999876 PP

  == domain 8  score: 11.8 bits;  conditional E-value: 0.00021
       TPR_7   1 aLlnLarlysrlGdyeeAielyeqsLalt 29 
                 +L+nL+ l +++Gd e A++l+++  +l+
  KOO20953.1 781 SLYNLGILLEERGDLEGAAKLLRE--ELH 807
                 79**********************..665 PP

>> TPR_2  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   0.1         2   1.9e+03      18      31 ..     502     515 ..     495     521 .. 0.74
   2 ?    3.3   0.1      0.11   1.1e+02       5      22 ..     531     548 ..     529     557 .. 0.86
   3 !   16.6   0.2   6.6e-06    0.0062       6      28 ..     574     596 ..     571     597 .. 0.94
   4 !    8.9   0.4    0.0019       1.8       4      29 ..     614     639 ..     612     643 .. 0.92
   5 !   11.3   0.2   0.00032       0.3       5      30 ..     657     682 ..     654     686 .. 0.90
   6 !    9.3   0.2    0.0014       1.3       5      29 ..     699     723 ..     696     726 .. 0.93
   7 !   10.4   0.0   0.00061      0.58       4      29 ..     740     765 ..     738     769 .. 0.92
   8 !   10.9   0.1   0.00044      0.41       4      26 ..     782     804 ..     780     807 .. 0.93

  Alignments for each domain:
  == domain 1  score: -0.6 bits;  conditional E-value: 2
       TPR_2  18 eeAleafekAleld 31 
                 e A+ ++++Al+ +
  KOO20953.1 502 ETAAVLYREALAQC 515
                 56777888888765 PP

  == domain 2  score: 3.3 bits;  conditional E-value: 0.11
       TPR_2   5 ynlGlayyklgdyeeAle 22 
                 +nl++++++++++eeA +
  KOO20953.1 531 NNLAMLLLAQDELEEAGQ 548
                 79*************955 PP

  == domain 3  score: 16.6 bits;  conditional E-value: 6.6e-06
       TPR_2   6 nlGlayyklgdyeeAleafekAl 28 
                 nlG +y ++g++eeA++++++Al
  KOO20953.1 574 NLGSLYKNAGELEEAEKLYREAL 596
                 8*********************9 PP

  == domain 4  score: 8.9 bits;  conditional E-value: 0.0019
       TPR_2   4 lynlGlayyklgdyeeAleafekAle 29 
                 ly l++++  +g++e A+ ++ +Al+
  KOO20953.1 614 LYLLAMLLHTRGELEAARPLYVEALA 639
                 8***********************98 PP

  == domain 5  score: 11.3 bits;  conditional E-value: 0.00032
       TPR_2   5 ynlGlayyklgdyeeAleafekAlel 30 
                 +nlG +  +lgd + A++++++Al+ 
  KOO20953.1 657 NNLGGLMQALGDVDAAAALYREALAA 682
                 79999*******************85 PP

  == domain 6  score: 9.3 bits;  conditional E-value: 0.0014
       TPR_2   5 ynlGlayyklgdyeeAleafekAle 29 
                 +nl+ ++ + g++e A +++++Al+
  KOO20953.1 699 NNLASLLQETGELEGASALYREALA 723
                 79*********************97 PP

  == domain 7  score: 10.4 bits;  conditional E-value: 0.00061
       TPR_2   4 lynlGlayyklgdyeeAleafekAle 29 
                 l+nlG ++ ++gd+e A+ ++++Al+
  KOO20953.1 740 LNNLGTLLKARGDLEGAEPLLREALA 765
                 89**********************97 PP

  == domain 8  score: 10.9 bits;  conditional E-value: 0.00044
       TPR_2   4 lynlGlayyklgdyeeAleafek 26 
                 lynlG +++++gd+e A++++++
  KOO20953.1 782 LYNLGILLEERGDLEGAAKLLRE 804
                 8******************9987 PP

>> TPR_1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.2       3.6   3.4e+03      18      29 ..     502     513 ..     496     517 .. 0.76
   2 ?    3.1   0.1     0.095        89       5      20 ..     531     546 ..     529     550 .. 0.94
   3 !   19.1   0.1   8.5e-07    0.0008       5      28 ..     573     596 ..     570     597 .. 0.94
   4 !    7.7   0.1    0.0034       3.2       3      29 ..     613     639 ..     612     641 .. 0.94
   5 ?    5.6   0.1     0.016        15       5      29 ..     657     681 ..     655     685 .. 0.86
   6 !    7.5   0.1     0.004       3.8       5      29 ..     699     723 ..     697     725 .. 0.95
   7 !   10.9   0.0   0.00033      0.31       3      29 ..     739     765 ..     737     768 .. 0.94
   8 !    7.7   0.0    0.0033       3.2       3      24 ..     781     802 ..     780     804 .. 0.88

  Alignments for each domain:
  == domain 1  score: -1.9 bits;  conditional E-value: 3.6
                 HHHHHHHHHHHH CS
       TPR_1  18 deAleyyekALe 29 
                 + A   y++AL 
  KOO20953.1 502 ETAAVLYREALA 513
                 668888999986 PP

  == domain 2  score: 3.1 bits;  conditional E-value: 0.095
                 HHHHHHHHHTT-HHHH CS
       TPR_1   5 ynlGnayfklgkydeA 20 
                 +nl+++++ + +++eA
  KOO20953.1 531 NNLAMLLLAQDELEEA 546
                 8**************9 PP

  == domain 3  score: 19.1 bits;  conditional E-value: 8.5e-07
                 HHHHHHHHHTT-HHHHHHHHHHHH CS
       TPR_1   5 ynlGnayfklgkydeAleyyekAL 28 
                  nlG +y + g+++eA++ y++AL
  KOO20953.1 573 TNLGSLYKNAGELEEAEKLYREAL 596
                 6**********************9 PP

  == domain 4  score: 7.7 bits;  conditional E-value: 0.0034
                 HHHHHHHHHHHTT-HHHHHHHHHHHHH CS
       TPR_1   3 alynlGnayfklgkydeAleyyekALe 29 
                 +ly l+++++  g+++ A   y +AL 
  KOO20953.1 613 SLYLLAMLLHTRGELEAARPLYVEALA 639
                 69***********************95 PP

  == domain 5  score: 5.6 bits;  conditional E-value: 0.016
                 HHHHHHHHHTT-HHHHHHHHHHHHH CS
       TPR_1   5 ynlGnayfklgkydeAleyyekALe 29 
                 +nlG + + lg+ d A + y++AL 
  KOO20953.1 657 NNLGGLMQALGDVDAAAALYREALA 681
                 577777789**************96 PP

  == domain 6  score: 7.5 bits;  conditional E-value: 0.004
                 HHHHHHHHHTT-HHHHHHHHHHHHH CS
       TPR_1   5 ynlGnayfklgkydeAleyyekALe 29 
                 +nl+ ++++ g+++ A + y++AL 
  KOO20953.1 699 NNLASLLQETGELEGASALYREALA 723
                 8**********************95 PP

  == domain 7  score: 10.9 bits;  conditional E-value: 0.00033
                 HHHHHHHHHHHTT-HHHHHHHHHHHHH CS
       TPR_1   3 alynlGnayfklgkydeAleyyekALe 29 
                 +l+nlG ++   g+++ A+   ++AL 
  KOO20953.1 739 SLNNLGTLLKARGDLEGAEPLLREALA 765
                 69***********************95 PP

  == domain 8  score: 7.7 bits;  conditional E-value: 0.0033
                 HHHHHHHHHHHTT-HHHHHHHH CS
       TPR_1   3 alynlGnayfklgkydeAleyy 24 
                 +lynlG ++ + g+++ A +  
  KOO20953.1 781 SLYNLGILLEERGDLEGAAKLL 802
                 69**************998865 PP

>> TPR_4  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.2   0.7    0.0049       4.6       6      24 ..     532     550 ..     531     550 .. 0.93
   2 ?    2.9   0.0      0.24   2.3e+02       4      25 ..     572     593 ..     569     594 .. 0.83
   3 !   13.8   0.5   7.5e-05      0.07       2      23 ..     612     633 ..     611     636 .. 0.90
   4 !    8.8   0.5     0.003       2.8       6      26 .]     658     678 ..     657     678 .. 0.90
   5 ?    4.8   0.1     0.061        57       6      26 .]     700     720 ..     699     720 .. 0.93
   6 !   11.8   0.0   0.00032       0.3       5      26 .]     741     762 ..     738     762 .. 0.92
   7 !   10.9   0.1   0.00064       0.6       3      26 .]     781     804 ..     779     804 .. 0.92

  Alignments for each domain:
  == domain 1  score: 8.2 bits;  conditional E-value: 0.0049
       TPR_4   6 aLArallalGdldeArall 24 
                 +LA++lla+ +l+eA +ll
  KOO20953.1 532 NLAMLLLAQDELEEAGQLL 550
                 7**************9887 PP

  == domain 2  score: 2.9 bits;  conditional E-value: 0.24
       TPR_4   4 llaLArallalGdldeAralle 25 
                   +L+ ++  +G+l+eA+ l +
  KOO20953.1 572 MTNLGSLYKNAGELEEAEKLYR 593
                 5689999999*******98877 PP

  == domain 3  score: 13.8 bits;  conditional E-value: 7.5e-05
       TPR_4   2 rallaLArallalGdldeAral 23 
                 + l++LA++l+ +G+l++Ar l
  KOO20953.1 612 ASLYLLAMLLHTRGELEAARPL 633
                 5799****************87 PP

  == domain 4  score: 8.8 bits;  conditional E-value: 0.003
       TPR_4   6 aLArallalGdldeAraller 26 
                 +L+ +++alGd d+A+al ++
  KOO20953.1 658 NLGGLMQALGDVDAAAALYRE 678
                 6788899***********996 PP

  == domain 5  score: 4.8 bits;  conditional E-value: 0.061
       TPR_4   6 aLArallalGdldeAraller 26 
                 +LA +l+++G+l+ A al ++
  KOO20953.1 700 NLASLLQETGELEGASALYRE 720
                 799**************9996 PP

  == domain 6  score: 11.8 bits;  conditional E-value: 0.00032
       TPR_4   5 laLArallalGdldeAraller 26 
                  +L+ +l a+Gdl+ A+ ll++
  KOO20953.1 741 NNLGTLLKARGDLEGAEPLLRE 762
                 589*****************97 PP

  == domain 7  score: 10.9 bits;  conditional E-value: 0.00064
       TPR_4   3 allaLArallalGdldeAraller 26 
                  l++L+ +l ++Gdl+ A+ ll++
  KOO20953.1 781 SLYNLGILLEERGDLEGAAKLLRE 804
                 689****************99996 PP

>> TPR_17  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.2   0.1      0.15   1.4e+02      15      32 ..     529     546 ..     527     548 .. 0.88
   2 !   10.4   0.0   0.00073      0.69      15      34 .]     571     590 ..     569     590 .. 0.93
   3 ?    3.4   0.2      0.13   1.2e+02      15      33 ..     613     631 ..     612     631 .. 0.93
   4 ?   -2.1   0.0       7.2   6.8e+03      16      31 ..     656     671 ..     645     673 .. 0.74
   5 ?    2.3   0.0      0.29   2.7e+02      15      32 ..     697     714 ..     689     716 .. 0.85
   6 !    9.5   0.0    0.0015       1.4      14      33 ..     738     757 ..     731     757 .. 0.89
   7 ?    6.7   0.0     0.011        10      15      32 ..     781     798 ..     774     800 .. 0.89

  Alignments for each domain:
  == domain 1  score: 3.2 bits;  conditional E-value: 0.15
      TPR_17  15 aynnLAelllknGdlmtA 32 
                 + nnLA lll + +l++A
  KOO20953.1 529 SINNLAMLLLAQDELEEA 546
                 569**********99998 PP

  == domain 2  score: 10.4 bits;  conditional E-value: 0.00073
      TPR_17  15 aynnLAelllknGdlmtArq 34 
                 +++nL+ l++++G+l++A++
  KOO20953.1 571 SMTNLGSLYKNAGELEEAEK 590
                 89****************85 PP

  == domain 3  score: 3.4 bits;  conditional E-value: 0.13
      TPR_17  15 aynnLAelllknGdlmtAr 33 
                 ++++LA ll+ +G+l+ Ar
  KOO20953.1 613 SLYLLAMLLHTRGELEAAR 631
                 79*************9997 PP

  == domain 4  score: -2.1 bits;  conditional E-value: 7.2
      TPR_17  16 ynnLAelllknGdlmt 31 
                  nnL+ l+  +Gd + 
  KOO20953.1 656 INNLGGLMQALGDVDA 671
                 5777777777777665 PP

  == domain 5  score: 2.3 bits;  conditional E-value: 0.29
      TPR_17  15 aynnLAelllknGdlmtA 32 
                 + nnLA ll + G+l+ A
  KOO20953.1 697 SINNLASLLQETGELEGA 714
                 679*********999876 PP

  == domain 6  score: 9.5 bits;  conditional E-value: 0.0015
      TPR_17  14 daynnLAelllknGdlmtAr 33 
                  ++nnL++ll+ +Gdl+ A+
  KOO20953.1 738 TSLNNLGTLLKARGDLEGAE 757
                 589*************9986 PP

  == domain 7  score: 6.7 bits;  conditional E-value: 0.011
      TPR_17  15 aynnLAelllknGdlmtA 32 
                 +++nL+ ll+++Gdl+ A
  KOO20953.1 781 SLYNLGILLEERGDLEGA 798
                 89************9977 PP

>> LRR_6  Leucine Rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.0       6.5   6.1e+03      10      24 .]     402     416 ..     399     416 .. 0.88
   2 !   18.0   0.0   2.2e-06    0.0021       3      24 .]     425     446 ..     423     446 .. 0.92
   3 !   17.5   0.2     3e-06    0.0029       5      24 .]     459     478 ..     459     478 .. 0.98

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 6.5
       LRR_6  10 LsgNdIgDeGaeaLa 24 
                 L gN +++  a aLa
  KOO20953.1 402 LDGNALTNRAAAALA 416
                 789*****9999997 PP

  == domain 2  score: 18.0 bits;  conditional E-value: 2.2e-06
       LRR_6   3 thLteLdLsgNdIgDeGaeaLa 24 
                 ++Lt+L+L +N Ig eG+  La
  KOO20953.1 425 RTLTTLSLGSNRIGAEGVAVLA 446
                 89****************9886 PP

  == domain 3  score: 17.5 bits;  conditional E-value: 3e-06
       LRR_6   5 LteLdLsgNdIgDeGaeaLa 24 
                 LteL+L gN +gD+Ga+aLa
  KOO20953.1 459 LTELNLFGNSMGDDGATALA 478
                 9******************8 PP

>> TPR_16  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.3       9.6     9e+03       6      20 ..     445     459 ..     439     462 .. 0.55
   2 ?    1.0   2.1      0.76   7.2e+02      38      63 ..     531     556 ..     498     559 .. 0.79
   3 !   22.4   3.8   1.5e-07   0.00014       2      63 ..     574     640 ..     573     643 .. 0.92
   4 ?    4.7  11.1      0.05        47       5      63 ..     661     724 ..     657     728 .. 0.81
   5 !   14.5   3.3   4.5e-05     0.043       3      62 ..     701     765 ..     699     772 .. 0.81
   6 !   25.6   0.8   1.5e-08   1.4e-05       2      62 ..     742     807 ..     741     812 .. 0.88

  Alignments for each domain:
  == domain 1  score: -2.6 bits;  conditional E-value: 9.6
      TPR_16   6 aalragdyddAaaal 20 
                 +a++++ +++A+ al
  KOO20953.1 445 LAAASRSWQQALGAL 459
                 445555566665555 PP

  == domain 2  score: 1.0 bits;  conditional E-value: 0.76
      TPR_16  38 lllgdaalrqgrlaeAaalyraalra 63 
                 ++l+ ++l+q +l+eA +l+ +al+a
  KOO20953.1 531 NNLAMLLLAQDELEEAGQLLCEALDA 556
                 68999999********9777666665 PP

  == domain 3  score: 22.4 bits;  conditional E-value: 1.5e-07
      TPR_16   2 alaraalragdyddAaaaleaalkrdpssPd.....aaeAllllgdaalrqgrlaeAaalyraalra 63 
                 +l+ ++ +ag+ ++A++++++al+ ++++       + ++l+ll+ ++  +g+l++A+ ly +al+a
  KOO20953.1 574 NLGSLYKNAGELEEAEKLYREALDGARKTLGddhhmTLASLYLLAMLLHTRGELEAARPLYVEALAA 640
                 689999********************99999***************************777777765 PP

  == domain 4  score: 4.7 bits;  conditional E-value: 0.05
      TPR_16   5 raalragdyddAaaaleaalkrdpssPd.....aaeAllllgdaalrqgrlaeAaalyraalra 63 
                  +  ++gd d+Aaa++++al++++         +  + ++l+ ++ + g+l++A alyr+al+a
  KOO20953.1 661 GLMQALGDVDAAAALYREALAARRTALGdmhpdTLISINNLASLLQETGELEGASALYREALAA 724
                 555789***************997743355444888889999999999************9965 PP

  == domain 5  score: 14.5 bits;  conditional E-value: 4.5e-05
      TPR_16   3 laraalragdyddAaaaleaalkrdpssPd.....aaeAllllgdaalrqgrlaeAaalyraalr 62 
                 la ++ + g+ + A a++++al++++ +       +  +l++lg ++ ++g+l++A+ l+r+al+
  KOO20953.1 701 LASLLQETGELEGASALYREALAARRATLGnrhprTITSLNNLGTLLKARGDLEGAEPLLREALA 765
                 7888888888888888888888887543334444499*************************996 PP

  == domain 6  score: 25.6 bits;  conditional E-value: 1.5e-08
      TPR_16   2 alaraalragdyddAaaaleaalkr.....dpssPdaaeAllllgdaalrqgrlaeAaalyraalr 62 
                 +l++++ ++gd + A+++l++al++     + ++Pd+  +l++lg ++ ++g+l++Aa l+r++l 
  KOO20953.1 742 NLGTLLKARGDLEGAEPLLREALAScreelGDEHPDTLSSLYNLGILLEERGDLEGAAKLLREELH 807
                 6899999****************9644444778899**************************9885 PP

>> TPR_14  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.3   0.5      0.88   8.3e+02      12      31 ..     496     515 ..     489     519 .. 0.86
   2 ?    1.6   0.4      0.68   6.4e+02       7      30 ..     533     556 ..     532     561 .. 0.88
   3 !   13.1   0.1   0.00015      0.14       7      29 ..     575     597 ..     574     607 .. 0.91
   4 ?    5.3   2.3     0.046        44       3      30 ..     613     640 ..     611     645 .. 0.90
   5 !    8.9   1.2    0.0031         3       8      30 ..     660     682 ..     658     689 .. 0.86
   6 !    7.4   0.8      0.01       9.4       7      30 ..     701     724 ..     700     732 .. 0.91
   7 !   10.3   0.1    0.0011       1.1       7      31 ..     743     767 ..     741     777 .. 0.88
   8 !    7.8   0.1    0.0071       6.7       4      26 ..     782     804 ..     779     811 .. 0.89

  Alignments for each domain:
  == domain 1  score: 1.3 bits;  conditional E-value: 0.88
      TPR_14  12 lalGdpdeAiallrralala 31 
                 + ++ +++A+ l+r+ala++
  KOO20953.1 496 MDADALETAAVLYREALAQC 515
                 66788999*********997 PP

  == domain 2  score: 1.6 bits;  conditional E-value: 0.68
      TPR_14   7 laeallalGdpdeAiallrralal 30 
                 la +lla+++++eA +ll +al++
  KOO20953.1 533 LAMLLLAQDELEEAGQLLCEALDA 556
                 78899************9999976 PP

  == domain 3  score: 13.1 bits;  conditional E-value: 0.00015
      TPR_14   7 laeallalGdpdeAiallrrala 29 
                 l++++ ++G+++eA++l+r+al+
  KOO20953.1 575 LGSLYKNAGELEEAEKLYREALD 597
                 7899*****************97 PP

  == domain 4  score: 5.3 bits;  conditional E-value: 0.046
      TPR_14   3 allalaeallalGdpdeAiallrralal 30 
                  l++la +l ++G++++A+ l+ +ala+
  KOO20953.1 613 SLYLLAMLLHTRGELEAARPLYVEALAA 640
                 5899*********************986 PP

  == domain 5  score: 8.9 bits;  conditional E-value: 0.0031
      TPR_14   8 aeallalGdpdeAiallrralal 30 
                 + ++ alGd d+A+al+r+ala+
  KOO20953.1 660 GGLMQALGDVDAAAALYREALAA 682
                 667889***************96 PP

  == domain 6  score: 7.4 bits;  conditional E-value: 0.01
      TPR_14   7 laeallalGdpdeAiallrralal 30 
                 la++l + G++++A al+r+ala+
  KOO20953.1 701 LASLLQETGELEGASALYREALAA 724
                 79999*****************96 PP

  == domain 7  score: 10.3 bits;  conditional E-value: 0.0011
      TPR_14   7 laeallalGdpdeAiallrralala 31 
                 l+ +l a+Gd+++A+ llr+ala +
  KOO20953.1 743 LGTLLKARGDLEGAEPLLREALASC 767
                 67899*****************955 PP

  == domain 8  score: 7.8 bits;  conditional E-value: 0.0071
      TPR_14   4 llalaeallalGdpdeAiallrr 26 
                 l+ l+ +l+++Gd+++A++llr+
  KOO20953.1 782 LYNLGILLEERGDLEGAAKLLRE 804
                 57799****************97 PP

>> TPR_19  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6   3.8     0.012        11       2      54 ..     496     556 ..     495     561 .. 0.78
   2 !    7.4   2.1    0.0064       6.1       4      45 ..     582     631 ..     581     643 .. 0.78
   3 !    8.3   4.4    0.0035       3.3       5      54 ..     667     724 ..     664     728 .. 0.84
   4 !   13.0   0.5   0.00012      0.11       3      49 ..     749     803 ..     747     806 .. 0.92

  Alignments for each domain:
  == domain 1  score: 6.6 bits;  conditional E-value: 0.012
      TPR_19   2 laegdyaeAlalleqalqe........dpknaearllLAeallalgqldeAealLdalpee 54 
                 +++  ++ A+ l+++al++          + +    +LA +lla+ +l+eA +lL +++++
  KOO20953.1 496 MDADALETAAVLYREALAQcreklgdrHEDTLTSINNLAMLLLAQDELEEAGQLLCEALDA 556
                 567778899999999997766666644555666677****************999777766 PP

  == domain 2  score: 7.4 bits;  conditional E-value: 0.0064
      TPR_19   4 egdyaeAlalleqalqedpk........naearllLAeallalgqldeAe 45 
                 +g ++eA +l+++al+ + k         ++ ++lLA +l   g+l++A+
  KOO20953.1 582 AGELEEAEKLYREALDGARKtlgddhhmTLASLYLLAMLLHTRGELEAAR 631
                 6999**********9884444444456556666688*************8 PP

  == domain 3  score: 8.3 bits;  conditional E-value: 0.0035
      TPR_19   5 gdyaeAlalleqalqe........dpknaearllLAeallalgqldeAealLdalpee 54 
                 gd ++A+al+++al++         p+ +    +LA +l ++g+l+ A al  +++++
  KOO20953.1 667 GDVDAAAALYREALAArrtalgdmHPDTLISINNLASLLQETGELEGASALYREALAA 724
                 9************97766666655888888888*****************99888766 PP

  == domain 4  score: 13.0 bits;  conditional E-value: 0.00012
      TPR_19   3 aegdyaeAlalleqal........qedpknaearllLAeallalgqldeAealLd 49 
                 a+gd++ A +ll++al        +e p+ +  +++L ++l + g+l+ A +lL 
  KOO20953.1 749 ARGDLEGAEPLLREALascreelgDEHPDTLSSLYNLGILLEERGDLEGAAKLLR 803
                 79*************98888777788**************************996 PP

>> Osmo_CC  Osmosensory transporter coiled coil
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.8   0.0     0.073        69      29      44 ..     678     693 ..     663     694 .. 0.67
   2 ?    3.9   0.0     0.068        64      29      44 ..     720     735 ..     717     736 .. 0.92
   3 ?   -0.5   0.0       1.7   1.6e+03      30      44 ..     763     777 ..     761     778 .. 0.85

  Alignments for each domain:
  == domain 1  score: 3.8 bits;  conditional E-value: 0.073
                 HHHHHHHHHHHHH--- CS
     Osmo_CC  29 aaLeekRqrLvdqHPk 44 
                 +aL ++R+ L d HP+
  KOO20953.1 678 EALAARRTALGDMHPD 693
                 35666**********7 PP

  == domain 2  score: 3.9 bits;  conditional E-value: 0.068
                 HHHHHHHHHHHHH--- CS
     Osmo_CC  29 aaLeekRqrLvdqHPk 44 
                 +aL ++R +L ++HP+
  KOO20953.1 720 EALAARRATLGNRHPR 735
                 58999**********7 PP

  == domain 3  score: -0.5 bits;  conditional E-value: 1.7
                 HHHHHHHHHHHH--- CS
     Osmo_CC  30 aLeekRqrLvdqHPk 44 
                 aL   R++L d HP+
  KOO20953.1 763 ALASCREELGDEHPD 777
                 677789********7 PP

>> MIT  MIT (microtubule interacting and transport) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.1       1.9   1.8e+03      20      38 ..     501     519 ..     497     534 .. 0.75
   2 ?    6.5   0.1    0.0091       8.6      16      32 ..     581     597 ..     571     607 .. 0.89
   3 ?   -0.7   0.0       1.6   1.5e+03      14      32 ..     621     639 ..     616     652 .. 0.81
   4 ?   -0.8   0.0       1.7   1.6e+03      18      32 ..     667     681 ..     664     692 .. 0.84
   5 ?    1.0   0.0      0.49   4.6e+02      11      32 ..     702     723 ..     696     740 .. 0.83

  Alignments for each domain:
  == domain 1  score: -0.9 bits;  conditional E-value: 1.9
         MIT  20 yeeAlelYkealelLlqal 38 
                  e+A  lY+eal  + + l
  KOO20953.1 501 LETAAVLYREALAQCREKL 519
                 6889999***998776655 PP

  == domain 2  score: 6.5 bits;  conditional E-value: 0.0091
         MIT  16 nagnyeeAlelYkeale 32 
                 nag+ eeA +lY+eal+
  KOO20953.1 581 NAGELEEAEKLYREALD 597
                 99*************98 PP

  == domain 3  score: -0.7 bits;  conditional E-value: 1.6
         MIT  14 eDnagnyeeAlelYkeale 32 
                 +  +g+ e+A  lY eal 
  KOO20953.1 621 LHTRGELEAARPLYVEALA 639
                 557899**********986 PP

  == domain 4  score: -0.8 bits;  conditional E-value: 1.7
         MIT  18 gnyeeAlelYkeale 32 
                 g+ ++A  lY+eal 
  KOO20953.1 667 GDVDAAAALYREALA 681
                 7889999*****986 PP

  == domain 5  score: 1.0 bits;  conditional E-value: 0.49
         MIT  11 AveeDnagnyeeAlelYkeale 32 
                 A  + + g+ e A  lY+eal 
  KOO20953.1 702 ASLLQETGELEGASALYREALA 723
                 666678899***********85 PP

>> TPR_11  TPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.5   0.2      0.52   4.9e+02      10      24 ..     501     515 ..     496     518 .. 0.86
   2 ?    5.3   0.6     0.016        16       1      22 [.     576     597 ..     576     597 .. 0.90
   3 ?    1.4   0.0      0.28   2.6e+02       5      22 ..     622     639 ..     620     642 .. 0.88
   4 ?    4.4   0.3     0.033        31       6      22 ..     665     681 ..     664     685 .. 0.91
   5 ?    6.4   0.2    0.0074         7       6      22 ..     707     723 ..     703     726 .. 0.90
   6 ?   -1.5   0.0       2.2   2.1e+03       3      21 ..     746     764 ..     744     767 .. 0.76
   7 ?   -1.2   0.0       1.8   1.7e+03      25      40 ..     776     791 ..     776     793 .. 0.75
   8 ?   -1.2   0.0       1.8   1.7e+03       6      18 ..     791     803 ..     786     804 .. 0.85

  Alignments for each domain:
  == domain 1  score: 0.5 bits;  conditional E-value: 0.52
      TPR_11  10 yeeAieaYkkAlkld 24 
                 +e A   Y++Al+ +
  KOO20953.1 501 LETAAVLYREALAQC 515
                 799*********976 PP

  == domain 2  score: 5.3 bits;  conditional E-value: 0.016
      TPR_11   1 GdayyeqGkyeeAieaYkkAlk 22 
                 G +y   G++eeA + Y++Al+
  KOO20953.1 576 GSLYKNAGELEEAEKLYREALD 597
                 6788899*************95 PP

  == domain 3  score: 1.4 bits;  conditional E-value: 0.28
      TPR_11   5 yeqGkyeeAieaYkkAlk 22 
                 + +G++e+A   Y +Al+
  KOO20953.1 622 HTRGELEAARPLYVEALA 639
                 669*************96 PP

  == domain 4  score: 4.4 bits;  conditional E-value: 0.033
      TPR_11   6 eqGkyeeAieaYkkAlk 22 
                 ++G+ ++A + Y++Al+
  KOO20953.1 665 ALGDVDAAAALYREALA 681
                 58*************97 PP

  == domain 5  score: 6.4 bits;  conditional E-value: 0.0074
      TPR_11   6 eqGkyeeAieaYkkAlk 22 
                 e G++e+A + Y++Al+
  KOO20953.1 707 ETGELEGASALYREALA 723
                 67*************97 PP

  == domain 6  score: -1.5 bits;  conditional E-value: 2.2
      TPR_11   3 ayyeqGkyeeAieaYkkAl 21 
                 ++ ++G++e+A   +++Al
  KOO20953.1 746 LLKARGDLEGAEPLLREAL 764
                 67799*****966666666 PP

  == domain 7  score: -1.2 bits;  conditional E-value: 1.8
      TPR_11  25 PdnaeayynLGlayyk 40 
                 Pd  + +ynLG ++ +
  KOO20953.1 776 PDTLSSLYNLGILLEE 791
                 5666789****99876 PP

  == domain 8  score: -1.2 bits;  conditional E-value: 1.8
      TPR_11   6 eqGkyeeAieaYk 18 
                 e+G++e+A + ++
  KOO20953.1 791 ERGDLEGAAKLLR 803
                 79******98765 PP

>> TPR_21  Tetratricopeptide repeat-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   4.2   7.5e-05     0.071      38     178 ..     447     601 ..     441     614 .. 0.82
   2 ?   -2.2   0.0         3   2.8e+03     156     176 ..     621     641 ..     620     660 .. 0.85
   3 ?    1.3   0.4      0.26   2.5e+02     153     178 ..     660     685 ..     657     703 .. 0.83
   4 ?   -0.2   0.0      0.75     7e+02     156     179 ..     705     728 ..     702     745 .. 0.74

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 7.5e-05
      TPR_21  38 eAsalYqqlqeave.......akdaakakeaaeeladeyggtaYaalaaLllAkaaveagdlaaAkaqLewvlekakdeelkalarlRLarvllaekky 129
                 +As  +qq + a++       +  ++ a+++a+e+a+e +++   + a++ +   + +a  + +A aq ++ l + ++++l+++ +  La +lla++++
  KOO20953.1 447 AASRSWQQALGALTelnlfgnSMGDDGATALANEVAKERPKSVRLQPAQMDADALETAAVLYREALAQCREKLGDRHEDTLTSINN--LAMLLLAQDEL 543
                 6888888888877777777775555568999*********************99****************************9987..799******** PP

      TPR_21 130 deAlktL...eakkeeafaalvael......rGDilvaqgkldeAraaYqaAlaalee 178
                 +eA ++L    ++++e+f  + +         G ++ + g+l+eA + Y++Al+   +
  KOO20953.1 544 EEAGQLLceaLDASRETFGPMHQHTlvsmtnLGSLYKNAGELEEAEKLYREALDGARK 601
                 ******95543345566766555432222226*********************98765 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 3
      TPR_21 156 lvaqgkldeAraaYqaAlaal 176
                 l  +g+l+ Ar  Y +Alaa 
  KOO20953.1 621 LHTRGELEAARPLYVEALAAS 641
                 5678999**********9986 PP

  == domain 3  score: 1.3 bits;  conditional E-value: 0.26
      TPR_21 153 GDilvaqgkldeAraaYqaAlaalee 178
                 G ++ a g+ d A a Y++Alaa  +
  KOO20953.1 660 GGLMQALGDVDAAAALYREALAARRT 685
                 6788999**************98765 PP

  == domain 4  score: -0.2 bits;  conditional E-value: 0.75
      TPR_21 156 lvaqgkldeAraaYqaAlaaleek 179
                 l ++g+l+ A a Y++Alaa  ++
  KOO20953.1 705 LQETGELEGASALYREALAARRAT 728
                 678899999999999999987765 PP

>> TPR_5  Tetratrico peptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   1.1       2.9   2.8e+03      59      97 ..     406     445 ..     368     451 .. 0.64
   2 ?    1.2   0.3      0.44   4.2e+02      18      63 ..     502     552 ..     496     562 .. 0.56
   3 ?    5.7   1.2     0.018        17      43      81 ..     574     612 ..     542     643 .. 0.65
   4 ?   11.9   2.3   0.00021       0.2       8      70 ..     660     727 ..     654     732 .. 0.80
   5 ?    9.0   2.6    0.0016       1.5       8      74 ..     702     773 ..     692     813 .. 0.73
   6 ?    3.2   0.5       0.1        96      14      69 ..     750     810 ..     742     847 .. 0.62

  Alignments for each domain:
  == domain 1  score: -1.5 bits;  conditional E-value: 2.9
       TPR_5  59 aLLraelea.psdelddalaaflaLvLsdlgrereavsiv 97 
                 aL +  ++a  +   ++al++++ L L +    +e+v+++
  KOO20953.1 406 ALTNRAAAAlAGAAEQGALRTLTTLSLGSNRIGAEGVAVL 445
                 3433333333455567888888889888888888888876 PP

  == domain 2  score: 1.2 bits;  conditional E-value: 0.44
       TPR_5  18 dkavplYrraLaeGLagarrrr...at.i.qLassLRnlGeaeealaLLra 63 
                 + a+ lYr+aLa+  ++   r+   +t i  La  L    e+eea +LL +
  KOO20953.1 502 ETAAVLYREALAQCREKLGDRHedtLTsInNLAMLLLAQDELEEAGQLLCE 552
                 578889999999865544333311111122455555555555555555555 PP

  == domain 3  score: 5.7 bits;  conditional E-value: 0.018
       TPR_5  43 qLassLRnlGeaeealaLLraeleapsdelddalaafla 81 
                  L s  +n Ge+eea++L r+ l+   + l d  +++la
  KOO20953.1 574 NLGSLYKNAGELEEAEKLYREALDGARKTLGDDHHMTLA 612
                 567777888888888888888877766665544333332 PP

  == domain 4  score: 11.9 bits;  conditional E-value: 0.00021
       TPR_5   8 agarDstGhedkavplYrraLae...GLagarrrra.ti.qLassLRnlGeaeealaLLraeleapsd 70 
                 +g +   G+ d+a+ lYr+aLa+    L +++   +  i  Las L   Ge+e a aL r+ l+a+  
  KOO20953.1 660 GGLMQALGDVDAAAALYREALAArrtALGDMHPDTLiSInNLASLLQETGELEGASALYREALAARRA 727
                 6778899**************97333577776655413437******************999888765 PP

  == domain 5  score: 9.0 bits;  conditional E-value: 0.0016
       TPR_5   8 agarDstGhedkavplYrraLae.....GLagarrrratiqLassLRnlGeaeealaLLraeleapsdeldd 74 
                 a+    tG+ + a  lYr+aLa+     G +  r       L   L+  G++e a+ LLr+ l++  +el d
  KOO20953.1 702 ASLLQETGELEGASALYREALAArratlGNRHPRTITSLNNLGTLLKARGDLEGAEPLLREALASCREELGD 773
                 5666789**************9733322222333333345788999999***********999887766654 PP

  == domain 6  score: 3.2 bits;  conditional E-value: 0.1
       TPR_5  14 tGhedkavplYrraLaeGLagarrrr.....atiqLassLRnlGeaeealaLLraeleaps 69 
                  G+ + a+pl r+aLa   ++    +         L   L   G++e a +LLr+el+a +
  KOO20953.1 750 RGDLEGAEPLLREALASCREELGDEHpdtlsSLYNLGILLEERGDLEGAAKLLREELHACT 810
                 5788889999999999876655443300000233444445555677888888888887644 PP

>> PPR  PPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3   0.1    0.0015       1.4       1      25 [.     570     594 ..     570     597 .. 0.89
   2 ?   -2.0   0.0       6.3   5.9e+03       6      25 ..     701     720 ..     697     722 .. 0.78
   3 ?   -2.3   0.1       7.7   7.2e+03      14      25 ..     793     804 ..     791     804 .. 0.89

  Alignments for each domain:
  == domain 1  score: 9.3 bits;  conditional E-value: 0.0015
         PPR   1 vtynslIsgycknGkleeAlelfke 25 
                 v+ + l s y  +G+leeA++l++e
  KOO20953.1 570 VSMTNLGSLYKNAGELEEAEKLYRE 594
                 677888899**************98 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 6.3
         PPR   6 lIsgycknGkleeAlelfke 25 
                 l s +   G+le A  l++e
  KOO20953.1 701 LASLLQETGELEGASALYRE 720
                 5556666899*****99998 PP

  == domain 3  score: -2.3 bits;  conditional E-value: 7.7
         PPR  14 GkleeAlelfke 25 
                 G+le A +l++e
  KOO20953.1 793 GDLEGAAKLLRE 804
                 99*******987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (874 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       450  (0.025099); expected 358.6 (0.02)
Passed bias filter:                      329  (0.0183502); expected 358.6 (0.02)
Passed Vit filter:                        48  (0.00267723); expected 17.9 (0.001)
Passed Fwd filter:                        20  (0.00111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              19  [number of targets reported over threshold]
# CPU time: 0.73u 0.26s 00:00:00.99 Elapsed: 00:00:00.49
# Mc/sec: 5326.18
//
Query:       KOO20954.1  [L=275]
Description: alpha beta fold family protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    4.7e-12   47.0   4.2    5.6e-12   46.7   4.2    1.1  1  Abhydrolase_6  Alpha/beta hydrolase family
    2.1e-06   27.2   0.0    2.3e-05   23.8   0.0    2.0  1  Hydrolase_4    Serine aminopeptidase, S33
  ------ inclusion threshold ------
      0.059   13.0   0.0       0.36   10.4   0.0    1.9  1  Abhydrolase_1  alpha/beta hydrolase fold
      0.074   12.9   0.0        1.4    8.8   0.0    2.2  2  Ser_hydrolase  Serine hydrolase
      0.087   12.9   0.0       0.15   12.1   0.0    1.4  1  Abhydrolase_4  TAP-like protein
       0.18   11.3   0.0       0.25   10.9   0.0    1.2  1  DLH            Dienelactone hydrolase family


Domain annotation for each model (and alignments):
>> Abhydrolase_6  Alpha/beta hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.7   4.2   1.9e-15   5.6e-12      43     218 ..      57     263 ..      22     265 .. 0.58

  Alignments for each domain:
  == domain 1  score: 46.7 bits;  conditional E-value: 1.9e-15
                    CS--HHH.CHHH.HHHHCCTT..TTSEEEEEETCHHHHHHHHHHCC.......EE.EEES-..----TTT........S----TTHHHHHHTT-C. CS
  Abhydrolase_6  43 ppldled.ladl.aalldelaagggpvvlvGHSlGGalalaaapla.....lvvg.vlldppptalpagl........laaalelllallallrl. 121
                      +++++ lad+ ++++ ++    g + lv++S G++ al+   +a     l +g  +++p    ++ +         ++ a++l+ a+ + lr  
     KOO20954.1  57 NFYTWAEqLADFtSEVIGAE----GGATLVANSIGTISALQ---AAidrpeLFRGvFVVNP---NFRELHaaeqpgwlRPLAMPLIGAVQRTLREr 142
                    33788444455555555555....899**************...66777987777666777...44444411111113333333333333322223 PP

                    ..CCCHCCH.......S-HSCCCCHHH.CCCCHCHCCCGHH............HHCCHHCHTTCCHHTT-TTGCEEE.CTT-CHHHHCHHCCCH.. CS
  Abhydrolase_6 122 ..lawlsre.......plprlfladed.adaawrarlarla............allaglgllpaaawadlpvpllvl.ggeDplvprllerlla.. 192
                      + ++ ++       +l +++++d   +d+ + + la+l+             + ag+ + p+   ++l +p++vl g+eDp+ p+   r+l   
     KOO20954.1 143 gqPLFDLLAnpstvktILKEPYHDDAQvTDELVDVLLAPLLskgaadvvfdtlSYSAGPLPEPLLSDERLAAPVMVLfGEEDPWTPPARVRALEry 238
                    3444443333444444444455554443245555555555554444444443322223333333333333333355559****9997755666678 PP

                    STTEEETCE...SSS-HHHHSHHHHH CS
  Abhydrolase_6 193 qagarlpvvlpgaGHlphleepdeva 218
                    + ++++ + lpg GH+ph+e+p+ v+
     KOO20954.1 239 RSVRGV-IGLPGVGHCPHDEAPELVN 263
                    899999.************9999886 PP

>> Hydrolase_4  Serine aminopeptidase, S33
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.8   0.0   7.6e-09   2.3e-05      49     214 ..      52     236 ..      47     258 .. 0.70

  Alignments for each domain:
  == domain 1  score: 23.8 bits;  conditional E-value: 7.6e-09
  Hydrolase_4  49 rghvpsfddyvdDlaafvekvkeehpelplfllGhSmGGliallyllrypdkvaglilsaPalkikaklk.appllklllkllgkllpklqv...... 139
                   g v +f ++ + la f+++v   ++++  +l++ S G + al+++ ++p+ ++g+ +++P+++  +  + + +l  l++ l+g + ++l+       
   KOO20954.1  52 EGSVYNFYTWAEQLADFTSEVIGAEGGA--TLVANSIGTISALQAAIDRPELFRGVFVVNPNFRELHAAEqPGWLRPLAMPLIGAVQRTLRErgqplf 147
                  5788999999999999999999777777..8********************************99888886777778899999999999999888888 PP

  Hydrolase_4 140 ...snnlkadslsrdpevvaayeadplvhgkitvrlllelldamkrlee.raakit..........lPllllhGeaDkvvdpeasrely 214
                      n++  + + ++p + +a  +d+lv   +   l  ++ d++ ++++ +a  +           +P+++l Ge+D+ ++p+  r+l 
   KOO20954.1 148 dllANPSTVKTILKEPYHDDAQVTDELVDVLLAPLLSKGAADVVFDTLSySAGPLPepllsderlaAPVMVLFGEEDPWTPPARVRALE 236
                  88855555566666666666666665554444333333333332222211222222333445555599999999999999988776543 PP

>> Abhydrolase_1  alpha/beta hydrolase fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.0   0.00012      0.36      57     252 ..      59     254 ..      31     259 .. 0.68

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00012
                    HHHHHHHHHH.HHHCTTSSEE.EEEETHHHHHHHHHHHHHGGGEEEEEEESECSSCCHHHHHHHHHHHHHHCHHC..HHHHHHHHHHHHHHHHCCS CS
  Abhydrolase_1  57 asvaddldri.ldalgddklt.lvGhSmGGmialayaaeyperVkalvllgaidpaaslieaqrqqaksfpdffd..gyaadcarnpagplladel 148
                     + a+ l  +  +  g +  + lv+ S G+  al++a + pe  +++  +++   ++   +a++q  +  p ++   g ++   r ++ pl++  +
     KOO20954.1  59 YTWAEQLADFtSEVIGAEGGAtLVANSIGTISALQAAIDRPELFRGVFVVNP---NFRELHAAEQPGWLRPLAMPliGAVQRTLRERGQPLFDLLA 151
                    55555555444555555555559*****************************...77777777777777777776335677777778888888888 PP

                    CHHHHHHHHHHHHHH..HCHHHCCHHHHHHHCHHHHHHHHHHHHHHHHCCHHHHHHHHHCTHHHHSEEEEEEETTCSSSCHHHHHHHHHCHTSEEE CS
  Abhydrolase_1 149 aaleqrhrlvdalkf..pdkskrfpssgsdnasslatgalksieqwpttdsaklllrlrelknvlaptlvisgtsDplvppkaledlaqllpkkrl 242
                    + +++ + l+ + ++  + ++   +    +  s +a+  +++  ++++ +    ll++++     ap++v+ g++Dp +pp   + l++  +   +
     KOO20954.1 152 NPSTVKTILKEPYHDdaQVTDELVDVLLAPLLSKGAADVVFDTLSYSAGPLPEPLLSDER---LAAPVMVLFGEEDPWTPPARVRALERYRSVRGV 244
                    888888777777777753344444445567777777777777777777777777777777...455888888888888888666666665222335 PP

                    EEEETCSSSH CS
  Abhydrolase_1 243 vvisdagHla 252
                    + +++ gH+ 
     KOO20954.1 245 IGLPGVGHCP 254
                    5566666655 PP

>> Ser_hydrolase  Serine hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.8   0.0   0.00046       1.4      41      90 ..      60     111 ..      48     124 .. 0.80
   2 ?    2.3   0.0     0.045   1.4e+02     108     140 ..     207     239 ..     111     258 .. 0.61

  Alignments for each domain:
  == domain 1  score: 8.8 bits;  conditional E-value: 0.00046
                    HHHHHHH...HHHHC-STTEEEEEETCHHHHHHHHHHHTTSSSEEEEEEET-- CS
  Ser_hydrolase  41 dWvaale...aaveaaeekvvlvAHSlgclavlhaaelqlakkvagalLVapa 90 
                    +W+++l+   ++v  ae+ ++lvA S+g + +l+aa   +++  +g++ V p 
     KOO20954.1  60 TWAEQLAdftSEVIGAEGGATLVANSIGTISALQAA-IDRPELFRGVFVVNPN 111
                    57666651114566677789**************99.999*******999986 PP

  == domain 2  score: 2.3 bits;  conditional E-value: 0.045
                    S-SSHHCCHCEEEEETTBTTC-HHHHHHHHHHC CS
  Ser_hydrolase 108 lpreklpfpslvvaSenDpyvsfeeaeelaeaw 140
                    l+ e+l  p +v+  e+Dp+ + ++ ++l +  
     KOO20954.1 207 LSDERLAAPVMVLFGEEDPWTPPARVRALERYR 239
                    445677778899999999999998888776654 PP

>> Abhydrolase_4  TAP-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   5.2e-05      0.15      30      89 ..     209     268 ..     196     273 .. 0.72

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 5.2e-05
  Abhydrolase_4  30 takgaapvLllqnerDpaTPyegakklakalggavlvtvegeGHgalaagntCvdkavda 89 
                     ++ aapv++l +e Dp TP++  ++l ++     ++   g GH+   +  + v+ ++ +
     KOO20954.1 209 DERLAAPVMVLFGEEDPWTPPARVRALERYRSVRGVIGLPGVGHCPHDEAPELVNPLIID 268
                    344479******************999887666667777777887666555555555555 PP

>> DLH  Dienelactone hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   8.3e-05      0.25     125     167 ..     194     236 ..     178     252 .. 0.82

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 8.3e-05
         DLH 125 avafYGlspekeleeaakikapilalfgeeDefipadevekle 167
                 ++++    ++++l  +++++ap+++lfgeeD+  p + v  le
  KOO20954.1 194 TLSYSAGPLPEPLLSDERLAAPVMVLFGEEDPWTPPARVRALE 236
                 555655688999********************99999887776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (275 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       217  (0.0121033); expected 358.6 (0.02)
Passed bias filter:                      210  (0.0117129); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.45u 0.28s 00:00:00.73 Elapsed: 00:00:00.43
# Mc/sec: 1933.68
//
Query:       KOO20955.1  [L=295]
Description: vesicle-associated membrane [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.1e-13   50.8   0.8    1.6e-13   50.2   0.8    1.2  1  Synaptobrevin  Synaptobrevin
    3.2e-07   30.3   0.0      6e-07   29.4   0.0    1.4  1  Longin         Regulated-SNARE-like domain
  ------ inclusion threshold ------
      0.023   14.7   1.3      0.042   13.8   1.3    1.3  1  SoDot-IcmSS    Substrate of the Dot/Icm secretion system, put


Domain annotation for each model (and alignments):
>> Synaptobrevin  Synaptobrevin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.2   0.8   2.7e-17   1.6e-13       8      80 ..     134     206 ..     127     213 .. 0.93

  Alignments for each domain:
  == domain 1  score: 50.2 bits;  conditional E-value: 2.7e-17
                    HHHHHHCCCCHHCCHHHHCHCCCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHTXXXXXXXXXXXXXXX CS
  Synaptobrevin   8 ikaevdevkdimkeNidkvlergekldeLvdktenLqssaqqFkkqarklkrkmwwknmkliiililvvlili 80 
                    + +evd+vk+i+ e ++++l+ +e+l+ L+d++e+L++++q+F+k ar+ k+ +  kn kl  i+++v+l+ i
     KOO20955.1 134 LIREVDSVKGIVSETVHRLLNTHENLEVLEDRSEQLKAQTQTFQKVARETKNIQKKKNNKLCRIFCCVILFGI 206
                    6689****************************************************************99866 PP

>> Longin  Regulated-SNARE-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.4   0.0     1e-10     6e-07      12      65 ..      42      97 ..      26     109 .. 0.84

  Alignments for each domain:
  == domain 1  score: 29.4 bits;  conditional E-value: 1e-10
      Longin 12 s.pqkltyt.hdsytfhylaedgltylviadesyprrlaFafLeeikreFlakygt 65
                +  ++l++  ++  t+hy ++   +yl ++ ++yp+r+aF +L e+k++++ ++g+
  KOO20955.1 42 TiHPRLSVAdKEIGTMHYETDRYAMYLAVTIADYPQRIAFKCLAELKERWADAFGE 97
                35789999988888**************************************9993 PP

>> SoDot-IcmSS  Substrate of the Dot/Icm secretion system, putative
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   1.3     7e-06     0.042       6      65 ..     136     195 ..     134     203 .. 0.93

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 7e-06
                  --HHHHHHHHHHHHHHHHHHCCCGSSGGGS-TTHHHHHHHHHHHHHHHHTCCCHHHHHHH CS
  SoDot-IcmSS   6 keydeLkkalkesiktllkrhkkvekieklsneRkaqlkfLtavleaLdassiepeekar 65 
                  +e d  k+ + e+++ ll+ h+++e +e+ s++ kaq +  ++v+ +  + ++++++k++
   KOO20955.1 136 REVDSVKGIVSETVHRLLNTHENLEVLEDRSEQLKAQTQTFQKVARETKNIQKKKNNKLC 195
                  678999****************************************99999999999976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (295 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1511  (0.0842769); expected 358.6 (0.02)
Passed bias filter:                      987  (0.0550505); expected 358.6 (0.02)
Passed Vit filter:                        99  (0.00552178); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.56u 0.29s 00:00:00.85 Elapsed: 00:00:00.46
# Mc/sec: 1938.94
//
Query:       KOO20956.1  [L=142]
Description: 30s ribosomal protein s6 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.2e-18   67.1   0.0    1.5e-18   66.8   0.0    1.1  1  Ribosomal_S6  Ribosomal protein S6


Domain annotation for each model (and alignments):
>> Ribosomal_S6  Ribosomal protein S6
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.8   0.0   8.5e-23   1.5e-18       2      90 .]       5      98 ..       4      98 .. 0.96

  Alignments for each domain:
  == domain 1  score: 66.8 bits;  conditional E-value: 8.5e-23
                  EEEEEEE-TTS-HH.HHHHHHHHHHHHHHHTTEEEEEEEEEEEEEEEEEETTE....EEEEEEEEEEEESCCHHHHHHHHHHCSTTEEEEEEEE CS
  Ribosomal_S6  2 YElvfilrpelsee.evkelvekvgklilenggvvrkveswGkrkLaypikkk....teGyyvlmnfdaspevikelertlrldervlRylivk 90
                  YE+v++++    ++ ++++l+++++k + ++g+v+ ++  wG r+Lay+i+k+     +++yv m++++sp ++++le +lr +++vlRyl++k
    KOO20956.1  5 YEVVMMTKSGKGATvQLTSLLQNCAKSLWSRGAVLADIRPWGARDLAYRIRKQsenhYSAQYVSMDVYCSPPTLHQLEGQLRTSPHVLRYLTFK 98
                  ********99998889************************************9777788888******************************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (142 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       267  (0.0148921); expected 358.6 (0.02)
Passed bias filter:                      246  (0.0137208); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.24s 00:00:00.63 Elapsed: 00:00:00.41
# Mc/sec: 1035.16
//
Query:       KOO20957.1  [L=1080]
Description: armadillo beta-catenin-like repeat-containing protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.3e-10   39.1   0.2    1.8e-09   37.3   0.2    2.0  1  IBN_N     Importin-beta N-terminal domain
  ------ inclusion threshold ------
      0.073   12.2   0.1       0.24   10.5   0.1    1.8  1  CRM1_C    CRM1 C terminal


Domain annotation for each model (and alignments):
>> IBN_N  Importin-beta N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.3   0.2   2.1e-13   1.8e-09       1      73 [.      32      97 ..      32      98 .. 0.97

  Alignments for each domain:
  == domain 1  score: 37.3 bits;  conditional E-value: 2.1e-13
                HHHHHHHHHCSTCHHHHHHHHHHCTTSHHHHHHHHHHHHHHHHHHHGGSCCCHCGSXHHHHHHHHHHHHHHHH CS
       IBN_N  1 AekqLkqlekqpgflsallqilanseselevRqlAalyLknlitkhWsdeeekqslpseekeqIrnnllnllg 73
                Ae +L ql+++p++ ++++++l++s+ + ++++ Aa  +k+li ++W+      ++++ ++++ rn+ ln l+
  KOO20957.1 32 AEAALVQLASNPEHIPQCQFVLTSSTMP-QAQLVAANAFKKLIVQSWN------HFTPAQRAEYRNYTLNFLA 97
                899*************************.*******************......***************9986 PP

>> CRM1_C  CRM1 C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.1   2.6e-05      0.24     112     178 ..     871     937 ..     861     957 .. 0.86

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 2.6e-05
      CRM1_C 112 pkileavfectldmikkdfeeyPehrveFfellrainkkcfkallklpseqfklvidsivwafkHte 178
                 +  le +++  l++  +d+  yP+ +  +f l++ +++++ +++ +l+++ ++ + +s+  ++k +e
  KOO20957.1 871 SDCLEVMIQMCLRVKLEDILAYPKLSRAYFTLMELLMRNHTTVIAELEPPVLRHLCNSLSEGLKSHE 937
                 55677888888998899*****************************************998888444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1080 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       628  (0.0350271); expected 358.6 (0.02)
Passed bias filter:                      522  (0.0291148); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.73u 0.29s 00:00:01.02 Elapsed: 00:00:00.43
# Mc/sec: 7598.13
//
Query:       KOO20958.1  [L=175]
Description: hypothetical protein Ctob_000391 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (175 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       306  (0.0170673); expected 358.6 (0.02)
Passed bias filter:                      271  (0.0151152); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.39u 0.24s 00:00:00.63 Elapsed: 00:00:00.40
# Mc/sec: 1325.76
//
Query:       KOO20959.1  [L=333]
Description: fog: ankyrin repeat [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.2e-14   54.6   4.4      8e-10   39.2   0.0    3.2  3  Ank_2          Ankyrin repeats (3 copies)
    1.2e-12   48.1   0.1    2.9e-08   34.1   0.0    3.2  4  Ank_4          Ankyrin repeats (many copies)
    7.3e-12   45.3   2.4    4.7e-05   23.6   0.0    4.0  4  Ank_5          Ankyrin repeats (many copies)
    2.4e-11   42.8   0.1      0.018   15.6   0.0    3.7  3  Ank_3          Ankyrin repeat
    4.3e-09   36.4   1.6    0.00045   20.5   0.0    3.6  3  Ank            Ankyrin repeat
  ------ inclusion threshold ------
        6.5    7.5   6.0        2.9    8.6   0.6    2.4  2  ATC_hydrolase  L-2-amino-thiazoline-4-carboxylic acid hydrola


Domain annotation for each model (and alignments):
>> Ank_2  Ankyrin repeats (3 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.2   0.0   2.7e-13     8e-10      21      82 ..      52     122 ..      37     123 .. 0.84
   2 !   14.1   0.2   1.8e-05     0.054      28      73 ..     128     178 ..     123     187 .. 0.72
   3 ?    2.0   1.0      0.11   3.1e+02       8      72 ..     169     243 ..     163     254 .. 0.55

  Alignments for each domain:
  == domain 1  score: 39.2 bits;  conditional E-value: 2.7e-13
       Ank_2  21 dpnk...ngktaLhyAakngnleivklLleh...ad..ndgr.tpLhyAarsghleivklLlekgadinlk 82 
                 dp++    g t+L+ A ++++ e+v+lL+ +   +d   +g+ tpL +A+++g  e+++ Ll  gad++++
  KOO20959.1  52 DPSQacfGGATPLYMASSRNHAEVVRLLVRAgapVDalANGYyTPLLAAVSHGCDEAARTLLAEGADVHVR 122
                 4442356789*******************97789667755666*******************99***9986 PP

  == domain 2  score: 14.1 bits;  conditional E-value: 1.8e-05
       Ank_2  28 taLhyAakngnleivklLleh.ad....ndgrtpLhyAarsghleivklLl 73 
                 t +h+Aak+g+++++k+L+++ ad     dg  +  +A r gh+e+++lL 
  KOO20959.1 128 TYVHAAAKSGKVDMLKILIAFdADlealFDGLAAQALAERRGHTEAANLLR 178
                 667888888888888888886644445566887778888888888888775 PP

  == domain 3  score: 2.0 bits;  conditional E-value: 0.11
       Ank_2   8 gnlelvklLl...egadpn......k.ngktaLhyAakngnleivklLleh....ad.ndgrtpLhyAarsghleivklL 72 
                 g++e+ +lL    e    +      +   + a h+ + n   e++ +  ++     d +   ++L +Aa+   le +  L
  KOO20959.1 169 GHTEAANLLRkaiER---RaqrvaaQeLARDAAHAVCDNSTPEALAAAYAEaverRDaERSSNALNAAAS--ELEGASAL 243
                 555666666532211...1112322145577888888887667766666545554334445678988884..34665555 PP

>> Ank_4  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.2   0.0   0.00029      0.88      35      55 .]      60      80 ..      49      92 .. 0.82
   2 !   34.1   0.0   9.7e-12   2.9e-08       1      55 []      93     146 ..      93     146 .. 0.96
   3 !   14.3   0.0   1.6e-05     0.048       3      30 ..     128     155 ..     127     178 .. 0.76
   4 ?   -1.8   0.0       1.7   5.1e+03      10      21 ..     166     178 ..     152     191 .. 0.72

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.00029
       Ank_4 35 GetalhiAakrgnveilklLl 55
                G t+l++A +r++ e+++lL+
  KOO20959.1 60 GATPLYMASSRNHAEVVRLLV 80
                778899999999988888885 PP

  == domain 2  score: 34.1 bits;  conditional E-value: 9.7e-12
       Ank_4   1 eltaLhyaaisgrlelvrlLlekgadinaqdnrsGetalhiAakrgnveilklLl 55 
                 ++t+L +a+++g+ e++r Ll+ gad++ + ++   t +h Aak g+v++lk L+
  KOO20959.1  93 YYTPLLAAVSHGCDEAARTLLAEGADVHVR-SDKWGTYVHAAAKSGKVDMLKILI 146
                 579***************************.88899****************997 PP

  == domain 3  score: 14.3 bits;  conditional E-value: 1.6e-05
       Ank_4   3 taLhyaaisgrlelvrlLlekgadinaq 30 
                 t  h+aa+sg+++++++L++++ad+ a 
  KOO20959.1 128 TYVHAAAKSGKVDMLKILIAFDADLEAL 155
                 568********************98776 PP

  == domain 4  score: -1.8 bits;  conditional E-value: 1.7
       Ank_4  10 i.sgrlelvrlLl 21 
                 +  g++e++ lL 
  KOO20959.1 166 ErRGHTEAANLLR 178
                 2567777777764 PP

>> Ank_5  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.6   0.0   1.6e-08   4.7e-05       6      53 ..      50      97 ..      46      97 .. 0.88
   2 !   16.7   0.1   2.3e-06    0.0068       1      46 [.      79     123 ..      79     125 .. 0.83
   3 !   10.6   0.0   0.00018      0.54      10      42 ..     121     152 ..     119     155 .. 0.90
   4 ?   -2.1   0.1       1.9   5.5e+03      18      41 ..     175     198 ..     167     210 .. 0.64

  Alignments for each domain:
  == domain 1  score: 23.6 bits;  conditional E-value: 1.6e-08
       Ank_5  6 padvnrldgggntpLhvAakygaadvvrlLlargadlnltdsrGltal 53
                 ad+   + gg tpL +A+++++a+vvrlL+  ga  ++  + ++t+l
  KOO20959.1 50 AADPSQACFGGATPLYMASSRNHAEVVRLLVRAGAPVDALANGYYTPL 97
                5777778999*********************99999999998889987 PP

  == domain 2  score: 16.7 bits;  conditional E-value: 2.3e-06
       Ank_5   1 LlehgpadvnrldgggntpLhvAakygaadvvrlLlargadlnltd 46 
                 L+++g a v++l +g +tpL  A+++g+ + +r Lla+gad  ++ 
  KOO20959.1  79 LVRAG-APVDALANGYYTPLLAAVSHGCDEAARTLLAEGADVHVRS 123
                 78889.55555555556************************99986 PP

  == domain 3  score: 10.6 bits;  conditional E-value: 0.00018
       Ank_5  10 nrldgggntpLhvAakygaadvvrlLlargadl 42 
                  r+d++g t  h Aak g  d++++L+a+ adl
  KOO20959.1 121 VRSDKWG-TYVHAAAKSGKVDMLKILIAFDADL 152
                 6889999.*******************999997 PP

  == domain 4  score: -2.1 bits;  conditional E-value: 1.9
       Ank_5  18 tpLhvAakygaadvvrlLlargad 41 
                 + L  A++++a++v+   lar a+
  KOO20959.1 175 NLLRKAIERRAQRVAAQELARDAA 198
                 556667777777777666655555 PP

>> Ank_3  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.0   5.9e-06     0.018       2      30 ..      60      87 ..      59      88 .. 0.94
   2 !   13.0   0.0   4.1e-05      0.12       2      30 ..      93     120 ..      92     121 .. 0.94
   3 !   10.1   0.0   0.00036       1.1       6      30 ..     130     153 ..     128     154 .. 0.90

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 5.9e-06
       Ank_3  2 GetpLhlAarsgnleivkfLlenkgadvn 30
                G tpL++A + ++ e+v++L++  ga+v+
  KOO20959.1 60 GATPLYMASSRNHAEVVRLLVR-AGAPVD 87
                89********************.8*9998 PP

  == domain 2  score: 13.0 bits;  conditional E-value: 4.1e-05
       Ank_3   2 GetpLhlAarsgnleivkfLlenkgadvn 30 
                 ++tpL  A+++g+ e ++ Ll   gadv+
  KOO20959.1  93 YYTPLLAAVSHGCDEAARTLLA-EGADVH 120
                 58********************.8***98 PP

  == domain 3  score: 10.1 bits;  conditional E-value: 0.00036
       Ank_3   6 LhlAarsgnleivkfLlenkgadvn 30 
                  h Aa+sg+++++k L+  + ad+ 
  KOO20959.1 130 VHAAAKSGKVDMLKILIA-FDADLE 153
                 599***************.999985 PP

>> Ank  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.5   0.0   1.5e-07   0.00045       2      30 ..      60      89 ..      59      91 .. 0.91
   2 !    7.4   0.0    0.0021       6.2       3      30 ..      94     122 ..      93     124 .. 0.90
   3 !    5.6   0.0    0.0078        23       7      29 ..     131     154 ..     130     157 .. 0.88

  Alignments for each domain:
  == domain 1  score: 20.5 bits;  conditional E-value: 1.5e-07
                SBBHHHHHHHHTTHHHHHHHH.TTTSTTCB CS
         Ank  2 GnTPLHlAatngkkriiklLL.hGAnlnal 30
                G TPL +A++++++++++lL+  GA ++al
  KOO20959.1 60 GATPLYMASSRNHAEVVRLLVrAGAPVDAL 89
                78*******************77**99986 PP

  == domain 2  score: 7.4 bits;  conditional E-value: 0.0021
                 BBHHHHHHHHTTHHHHHHHH.TTTSTTCB CS
         Ank   3 nTPLHlAatngkkriiklLL.hGAnlnal 30 
                 +TPL  A++ g  + ++ LL  GA+++ +
  KOO20959.1  94 YTPLLAAVSHGCDEAARTLLaEGADVHVR 122
                 8*******99*9999999**88***9876 PP

  == domain 3  score: 5.6 bits;  conditional E-value: 0.0078
                 HHHHHHTTHHHHHHHH.TTTSTTC CS
         Ank   7 HlAatngkkriiklLL.hGAnlna 29 
                 H Aa  gk++++k L+   A+l a
  KOO20959.1 131 HAAAKSGKVDMLKILIaFDADLEA 154
                 999999**********76899977 PP

>> ATC_hydrolase  L-2-amino-thiazoline-4-carboxylic acid hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.6   0.6   0.00098       2.9       8      63 ..     156     212 ..     150     238 .. 0.74
   2 ?    0.8   0.5      0.25   7.4e+02      13      56 ..     265     308 ..     254     316 .. 0.82

  Alignments for each domain:
  == domain 1  score: 8.6 bits;  conditional E-value: 0.00098
  ATC_hydrolase   8 ilvalyealkkeigkeeakeiirkalerlg.kergkklaekakakkdkadvekflal 63 
                    + + + +al+++ g+ ea +++rka+er + + ++++la+ a+ +  +++++++la+
     KOO20959.1 156 FDGLAAQALAERRGHTEAANLLRKAIERRAqRVAAQELARDAAHAVCDNSTPEALAA 212
                    4477889999999*************9999888888888887765555555555544 PP

  == domain 2  score: 0.8 bits;  conditional E-value: 0.25
  ATC_hydrolase  13 yealkkeigkeeakeiirkalerlgkergkklaekakakkdkad 56 
                    ++a++k  ++ ++++++  a++r ++ ++ ++++++ +  d ++
     KOO20959.1 265 VAAAQKDEKRSKLRALVGAAMRRDATTQALAIRARLEGGEDAEE 308
                    667788889999**********9999999999999887666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (333 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1559  (0.0869541); expected 358.6 (0.02)
Passed bias filter:                      607  (0.0338558); expected 358.6 (0.02)
Passed Vit filter:                        49  (0.002733); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.54u 0.25s 00:00:00.79 Elapsed: 00:00:00.42
# Mc/sec: 2376.43
//
Query:       KOO20960.1  [L=784]
Description: DNA2 nam7 helicase family protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      3e-62  210.8   0.1    2.9e-32  112.5   0.2    2.2  2  AAA_11           AAA domain
    3.6e-60  203.0   0.0    5.4e-60  202.4   0.0    1.3  1  AAA_12           AAA domain
    9.9e-11   41.7   0.0    8.3e-09   35.4   0.0    2.9  1  AAA_30           AAA domain
    3.5e-10   40.4   0.1    4.1e-09   36.9   0.1    2.5  1  AAA_19           AAA domain
    8.6e-07   28.9   0.2     0.0045   16.8   0.0    3.2  3  Viral_helicase1  Viral (Superfamily 1) RNA helicase
     0.0013   18.3   0.0        1.3    8.5   0.0    2.4  2  UvrD-helicase    UvrD/REP helicase N-terminal domain
  ------ inclusion threshold ------
      0.014   15.7   0.8       0.19   12.1   0.1    2.8  3  AAA_16           AAA ATPase domain
      0.046   13.5   0.0      0.087   12.6   0.0    1.5  1  DEAD             DEAD/DEAH box helicase
      0.078   13.3   0.0       0.28   11.4   0.0    2.1  1  AAA_22           AAA domain
       0.12   11.7   0.1       0.24   10.8   0.1    1.4  1  Mg_chelatase     Magnesium chelatase, subunit ChlI


Domain annotation for each model (and alignments):
>> AAA_11  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   96.2   0.0   1.5e-30   2.8e-27       3     118 ..     248     395 ..     246     407 .. 0.86
   2 !  112.5   0.2   1.6e-35   2.9e-32     188     260 ..     409     481 ..     399     482 .. 0.95

  Alignments for each domain:
  == domain 1  score: 96.2 bits;  conditional E-value: 1.5e-30
      AAA_11   3 ndsqreaiksalseseitliqGPPGtgKTktivellsqll....................sr...........rkseeeksakpriLvCapSNaAvDel 70 
                 n sq+ ai+++l  +++tliqGPPGtgKTkti+++ls+ll                    +               + ++++++++LvCapSNaA+De+
  KOO20960.1 248 NPSQLAAIRTCLCGRGVTLIQGPPGTGKTKTILGILSVLLashsahtltksersswrdvgEGgdaastdrhvhLGRAVAEEPPKHVLVCAPSNAAIDEI 346
                 89**************************************988888877776665555550055555555544226788999***************** PP

      AAA_11  71 lerllr....glldsegekykpkivRvgneeeriseavksvsleekvekrle 118
                 ++rllr    g+l+++ge+  p +vRvg++    +e++ +v le++ +kr++
  KOO20960.1 347 VSRLLRhtgpGMLNARGESFLPYVVRVGPNV---KESLIEVALETMAKKRMA 395
                 ****************************999...9*************9996 PP

  == domain 2  score: 112.5 bits;  conditional E-value: 1.6e-35
      AAA_11 188 leeevldeaeivltTlsgagsklleklakkfdvviIDEAaqavEpstliPlrlgakkvvLvGDpkQLpatvis 260
                 +++ vl+ea+iv+tTls+ag + +++l+++fd+v+IDEAaqavE+stliPl++++++++LvGDp QLpatv+s
  KOO20960.1 409 AKTLVLNEASIVCTTLSCAGYSIFSQLKQGFDTVLIDEAAQAVEVSTLIPLKYACRRLILVGDPSQLPATVFS 481
                 5689********************************************************************9 PP

>> AAA_12  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  202.4   0.0     3e-63   5.4e-60       1     198 [.     489     687 ..     489     688 .. 0.95

  Alignments for each domain:
  == domain 1  score: 202.4 bits;  conditional E-value: 3e-63
      AAA_12   1 lerSlferllkkekekvvlLdtqYRmhpeIsrfpsklfYkgkLkdaesvkkreleaqealeepleplvfidvekseeekekkeksyiNeeEaelvvklv 99 
                 +e+Slf+rl+  + ++v +L+tqYRmhp+Isrfp + fY g+L da+  ++ +    ++ +  l p+vf+dv++ + ++ +  +s++Ne Ea+l + +v
  KOO20960.1 489 YEQSLFQRLQIGG-QRVAMLTTQYRMHPAISRFPGRRFYAGALLDAPGQSQLRRA-AWHSQRWLGPYVFYDVSDGTASEVS--SSWSNELEAQLALAIV 583
                 79***********.*********************************87777777.799**************99999997..7*************** PP

      AAA_12 100 ekllkkgsee.erkkigvitpYraqvellkkklkekeeeksekeievntvdgfQGrekdviilslVRsn....ekkeigflkderrlNValTRAkskli 193
                 ++ll++++++ + ++ig+i+pY+ qv+ ++  lke+++e++++ i+vn+vdgfQGrekd+i+ls+VRs      ++ igfl+d+rr+NV++TRA+s+++
  KOO20960.1 584 RHLLNAYPDAiAPSSIGIISPYNGQVRHIRTLLKESFDEATARLIDVNSVDGFQGREKDIIVLSTVRSDlgqrGQRGIGFLRDARRMNVSITRARSSVF 682
                 **********999***************************9999************************887556667********************** PP

      AAA_12 194 ivGnk 198
                 ++G++
  KOO20960.1 683 VLGHA 687
                 ***86 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.4   0.0   4.6e-12   8.3e-09       3     130 ..     248     477 ..     246     514 .. 0.82

  Alignments for each domain:
  == domain 1  score: 35.4 bits;  conditional E-value: 4.6e-12
      AAA_30   3 naeQaaavealltsgdrvavltGpAGtGKttalkalreaweaag........................................grviglAptgkaAkv 61 
                 n++Q aa+++ l ++  v++++Gp+GtGKt ++ ++  ++ a+                                         ++v+++Ap+++a ++
  KOO20960.1 248 NPSQLAAIRTCLCGRG-VTLIQGPPGTGKTKTILGILSVLLASHsahtltksersswrdvgeggdaastdrhvhlgravaeeppKHVLVCAPSNAAIDE 345
                 899******9999886.*************999888777766644799************************************************999 PP

      AAA_30  62 La...............................e...elgieastiakllkrlk...............................grarlepg.tlliv 94 
                 +                                e   e+ +e++  +++ + l+                                  +l++g + +++
  KOO20960.1 346 IVsrllrhtgpgmlnargesflpyvvrvgpnvkEsliEVALETMAKKRMATLLEhgetisfdaaktlvlneasivcttlscagysIFSQLKQGfDTVLI 444
                 764666666666666555555555554444444144444444444444444444778999999999999999************944589999****** PP

      AAA_30  95 DEagmvdtkqlaallkaaekagakvilvGDerQlas 130
                 DEa+ +   ++   lk a +   ++ilvGD+ Ql++
  KOO20960.1 445 DEAAQAVEVSTLIPLKYACR---RLILVGDPSQLPA 477
                 *****998888888999988...9**********98 PP

>> AAA_19  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.9   0.1   2.3e-12   4.1e-09       7     143 ..     259     477 ..     251     480 .. 0.77

  Alignments for each domain:
  == domain 1  score: 36.9 bits;  conditional E-value: 2.3e-12
      AAA_19   7 alkekvllvtaGpGtGKTrvlkhivallvelggvkp....................................eeillvaftgrAakelrerlaalgae. 68 
                  + ++v l+ ++pGtGKT+++ +i+++l++ ++ +                                     +++l++a+ + A +e+  rl   +++ 
  KOO20960.1 259 LCGRGVTLIQGPPGTGKTKTILGILSVLLASHSAHTltksersswrdvgeggdaastdrhvhlgravaeeppKHVLVCAPSNAAIDEIVSRLLRHTGPg 357
                 5678999*************************99889*******************************************************7777779 PP

      AAA_19  69 ...................................atTiHrlal.........ldfddlltealelle.............eaeeekklqeee.llivD 109
                                                            +         + fd  +t  l   +             + +  ++l++++ ++++D
  KOO20960.1 358 mlnargesflpyvvrvgpnvkeslievaletmakkR-------MatllehgetISFDAAKTLVL---NeasivcttlscagY-SIFSQLKQGFdTVLID 445
                 999999999999999999998888888855444330.......244555555634444332222...123355566667754.55677888999***** PP

      AAA_19 110 Efqdvd.elqyrLlkallgekkklllvGDpdQliy 143
                 E+ +         lk  +    +l+lvGDp Ql+ 
  KOO20960.1 446 EAAQAVeVSTLIPLKYAC---RRLILVGDPSQLPA 477
                 *86654144333344444...67**********95 PP

>> Viral_helicase1  Viral (Superfamily 1) RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.2   0.1    0.0083        15       2      26 ..     266     288 ..     265     319 .. 0.72
   2 !   16.8   0.0   2.5e-06    0.0045      56     122 ..     434     497 ..     397     514 .. 0.84
   3 ?    3.1   0.0     0.036        65     161     232 ..     606     683 ..     581     685 .. 0.73

  Alignments for each domain:
  == domain 1  score: 5.2 bits;  conditional E-value: 0.0083
  Viral_helicase1   2 vvhGvpGcGKStlirkllrtslilt 26 
                      +++G pG GK++ i  +l+    l 
       KOO20960.1 266 LIQGPPGTGKTKTILGILSV--LLA 288
                      899***********999976..222 PP

  == domain 2  score: 16.8 bits;  conditional E-value: 2.5e-06
  Viral_helicase1  56 alvkstkgkililDEylllhaGyill.laalskaklvilfGDplQipfhsrnasfllahlpsslshrv 122
                      +l++  +++++++DE+ ++   ++   +  ++ ++ +il+GDp Q p    ++++  ++++ sl +r 
       KOO20960.1 434 QLKQ--GFDTVLIDEAAQAV--EVSTlIPLKYACRRLILVGDPSQLPATVFSDHSMKHNYEQSLFQRL 497
                      3444..49********8876..677768899******************9999999999999987765 PP

  == domain 3  score: 3.1 bits;  conditional E-value: 0.036
  Viral_helicase1 161 kgq.ekvlvyltftqalkealgvrevttvhevqGltfdkVtlvllketdlelis.........esrenllvAlTRhrkslvi 232
                      +gq  ++ ++l+++ ++ +a   + v+ v + qG + d  +l + ++ dl   +         ++   + v +TR+r+s+ +
       KOO20960.1 606 NGQvRHIRTLLKESFDEATARLID-VNSVDGFQGREKDIIVLSTVRS-DLG--QrgqrgigflRDARRMNVSITRARSSVFV 683
                      555224555555555555555565.9**********99888888755.433..33679999998899999*******99865 PP

>> UvrD-helicase  UvrD/REP helicase N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.3   0.1    0.0016       2.9       2      37 ..     248     286 ..     247     296 .. 0.78
   2 !    8.5   0.0   0.00073       1.3     236     294 ..     418     474 ..     379     475 .. 0.75

  Alignments for each domain:
  == domain 1  score: 7.3 bits;  conditional E-value: 0.0016
                    SHHHHHHHHS...-SSEEEEEE-TTSSHHHHHHHHHHHH CS
  UvrD-helicase   2 npeqreaias...lggpilveAsAGsGKTfvlaerilrl 37 
                    np+q +ai++    +g +l+   +G+GKT+++      l
     KOO20960.1 248 NPSQLAAIRTclcGRGVTLIQGPPGTGKTKTILGILSVL 286
                    678888887765567899*************98655555 PP

  == domain 2  score: 8.5 bits;  conditional E-value: 0.00073
                    HHHHHHHHHHCHHHHHHHHHHSSEEEESSGGG-BHHHHHHHHHHHTTTTTEEEEE-GGG CS
  UvrD-helicase 236 lhallelleeneelaealrerykeiliDEyQDTnkiQyrilkllasgheelfmvGDpkQ 294
                     + +++l+ ++ +++++l++ ++++liDE+ +  ++  + l  l  + + l++vGDp Q
     KOO20960.1 418 SIVCTTLSCAGYSIFSQLKQGFDTVLIDEAAQAVEV--STLIPLKYACRRLILVGDPSQ 474
                    4556667777999****************9554444..444444444456*******99 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.1   0.00011      0.19       8      56 ..     251     295 ..     250     354 .. 0.82
   2 ?   -2.6   0.0       3.6   6.4e+03      95     107 ..     568     594 ..     522     632 .. 0.53
   3 ?    0.5   0.0      0.38   6.8e+02      47     117 ..     673     745 ..     656     765 .. 0.64

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 0.00011
      AAA_16   8 eleqLlsalervrsgrpelvllsGesGvGKsslvrellralekdg.gifl 56 
                 +l++++++l+    gr +++l+ G++G+GK++ +  +l  l +++ +++l
  KOO20960.1 251 QLAAIRTCLC----GR-GVTLIQGPPGTGKTKTILGILSVLLASHsAHTL 295
                 5666666666....55.799************998887766666545554 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 3.6
      AAA_16  95 eawrekleeala..............a 107
                 + w+ +le++la              +
  KOO20960.1 568 SSWSNELEAQLAlaivrhllnaypdaI 594
                 334444444433333333333333330 PP

  == domain 3  score: 0.5 bits;  conditional E-value: 0.38
      AAA_16  47 alekdg.giflrgkcdqlesaipysalaqalareellrqlldeaesaeleawrekleeala..avpelagaea....s 117
                 ++++++  +f+ g++d l +    ++l++a  + +     +  ++ +  ++w e+ +++ +  a +el++++a    +
  KOO20960.1 673 SITRARsSVFVLGHADTLAK----DPLWEAVLQ-DATDRHCLVKALKPIGPWFEAARKEPErsAPDELDADHAgadgE 745
                 56666658889999999933....356777755.66666677777777888888888888855444444444444444 PP

>> DEAD  DEAD/DEAH box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   4.9e-05     0.087       2     131 ..     249     418 ..     248     448 .. 0.69

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 4.9e-05
                 HHHHHHHHHHH.TTCEEEEEESTTSSHHHHHHHHHHHHHHHS.....TTSTS.................................-EEEEEESSHHHHH CS
                 xxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.....xxxxx.................................xxxxxxxxxxxxxx RF
        DEAD   2 diQaeaiplil.gggdvlvaaeTGsGKTlaflipvlqivyet.....kgktg.................................pkalivePtreLae 61 
                 + Q +ai ++l g g  l++++ G+GKT   l  +   ++++     +   +                                 + +l+ +P+ + + 
  KOO20960.1 249 PSQLAAIRTCLcGRGVTLIQGPPGTGKTKTILGILSVLLASHsahtlT---KsersswrdvgeggdaastdrhvhlgravaeeppKHVLVCAPSNAAID 344
                 679999999995556889**********99554444334333444341...15567888888888999999999999999999989999********** PP

                 HHHHHHHHHTTT..STSEEEEEET.TSSHHHHHHHHHTTCSEEEEEHHHHHHHHHCTS.SHCTTEEEEEEETHH CS
                 xxxxxxxxxxxx..xxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxx RF
        DEAD  62 qtlnnlkkfkky..idlrvlliig.gvaardqlskldngvdivvgtpgrlddllstgk.lnlsqvrflVlDEad 131
                 +++++l + + +  ++ r ++++   v+   ++++   +v +  +  +r++ ll+ g+ ++++  ++lVl Ea 
  KOO20960.1 345 EIVSRLLRHTGPgmLNARGESFLPyVVRVGPNVKESLIEVALETMAKKRMATLLEHGEtISFDAAKTLVLNEAS 418
                 **999988877533444444333321222222222224666667777888888855544779999999998885 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   0.00016      0.28       5      65 ..     262     355 ..     259     417 .. 0.74

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00016
      AAA_22   5 agilvvtGesGtGKTtllrrlleqldeeakaee.................................erpevvfvtlpsstsskdllrellralg 65 
                 +g++++ G++GtGKT ++  +l+ l +  +a +                                 e+p+ v+v++ps    +++ ++llr +g
  KOO20960.1 262 RGVTLIQGPPGTGKTKTILGILSVLLASHSAHTltksersswrdvgeggdaastdrhvhlgravaeEPPKHVLVCAPSNAAIDEIVSRLLRHTG 355
                 799*************998888877554444436667777777777777777777777777777766666666666666677777666666665 PP

>> Mg_chelatase  Magnesium chelatase, subunit ChlI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.1   0.00013      0.24      12      62 ..     252     302 ..     244     320 .. 0.79

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00013
  Mg_chelatase  12 kraleiaaaGgHnlllvGppGsGKtmlakrlpsllpplseeealevakias 62 
                     a++ + +G+   l+ GppG+GKt  +  + s+l + +++ +l  ++ +s
    KOO20960.1 252 LAAIRTCLCGRGVTLIQGPPGTGKTKTILGILSVLLASHSAHTLTKSERSS 302
                   5688889999999************98888888887777777776666555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (784 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       424  (0.0236488); expected 358.6 (0.02)
Passed bias filter:                      397  (0.0221429); expected 358.6 (0.02)
Passed Vit filter:                        63  (0.00351386); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.70u 0.34s 00:00:01.04 Elapsed: 00:00:00.49
# Mc/sec: 4794.37
//
Query:       KOO20961.1  [L=446]
Description: 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    9.2e-31  106.9   0.1    9.2e-22   77.4   0.0    2.1  2  6PF2K       6-phosphofructo-2-kinase
    1.1e-19   70.9   1.5    3.3e-18   66.1   0.1    2.2  2  His_Phos_1  Histidine phosphatase superfamily (branch 1)


Domain annotation for each model (and alignments):
>> 6PF2K  6-phosphofructo-2-kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.2   0.0   1.2e-10   1.1e-06      18      42 ..       1      25 [.       1      29 [. 0.93
   2 !   77.4   0.0     1e-25   9.2e-22     109     220 ..      28     139 ..      24     142 .. 0.91

  Alignments for each domain:
  == domain 1  score: 28.2 bits;  conditional E-value: 1.2e-10
                EESSTTSSHHHHHHHHHHHHHHTT- CS
       6PF2K 18 lvGLpargKtyiskkltrylkwlgv 42
                +vGLpargK++iskkl r+l+w g 
  KOO20961.1  1 MVGLPARGKSFISKKLERFLSWRGE 25
                9*********************985 PP

  == domain 2  score: 77.4 bits;  conditional E-value: 1e-25
                 HHHHHHHHHHHHHTT...-EEEEEEEE--HHHHHHHHHHHHTTTSGGGTTS-HHHHHHHHHHHHHHHHTT-----TTTTTTSEEEEEETTTTEEEEE-- CS
       6PF2K 109 rerRklilefveenn...lkvlflesicsdeeiikeNikevklsspDYkdketeeaikdflkRlenyekqyeplddeedeelsyIkvidvgkslvvnnv 204
                   rR+++ +++ ++    ++v+f+es+c+d +++++N+ ++ + spDY   e e a++d   R+++ye+qye l+  + e+ls+Ik++d  ++l  n +
  KOO20961.1  28 VRRRQVVAQTLDRELhgeCQVIFVESVCNDTSVLERNLLQKISMSPDYCAMECEAALADLRTRIAQYESQYETLT--THERLSFIKLFDLSSELHLNLI 124
                 567788877776654677*********************************************************..99******************** PP

                 -SHHHHHHHHHHTT-- CS
       6PF2K 205 qgylqsrivyyllNih 220
                  g   +r v+y++ ih
  KOO20961.1 125 YG-SVARLVPYMMGIH 139
                 **.5679******998 PP

>> His_Phos_1  Histidine phosphatase superfamily (branch 1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    3.7   0.1    0.0048        43      23      54 ..     189     220 ..     174     232 .. 0.87
   2 !   66.1   0.1   3.7e-22   3.3e-18      47     180 ..     258     387 ..     250     398 .. 0.92

  Alignments for each domain:
  == domain 1  score: 3.7 bits;  conditional E-value: 0.0048
                 --B-HHHHHHHHHHHHHHTTS---EEEE-SSH CS
  His_Phos_1  23 vpLteeGreqAealaerlagepidaiysSplk 54 
                 + L+eeG   A++l+++++++ +++ ++S+  
  KOO20961.1 189 AALSEEGLLFAQRLGAFVRARCVEHHVASDAT 220
                 67***************************976 PP

  == domain 2  score: 66.1 bits;  conditional E-value: 3.7e-22
                 EEEE-SSHHHHHHHHHHHHCTT--EEE-GGGS----GGGTT-B.HHHHHH..HSHHHHHHHHH-GGG-BS-BHHHHHHHHHHHHHHHHHHTTTSEEEEE CS
  His_Phos_1  47 aiysSplkRarqTaeliaealglpveldegLrEidfGdweglttaeiaeeypeeleawlrdpadvrppggEsledvaaRvaaaleelaarhegetvlvV 145
                 +iy+S+l Ra+qTa  + +   ++++ +  L+ +d G+  glt +  a  ++e++++w++d  + r+pggEs+ d+ aR++++l el+++++   vlvV
  KOO20961.1 258 VIYTSTLPRAIQTASFVPR--LTRPHATSTLNPLDRGVAYGLTEEAFATGMAEDYARWRADLRHTRFPGGESYSDLIARLEPTLIELEQQTSP--VLVV 352
                 68*************9997..478999****************************************************************98..**** PP

                 E-HHHHHHHHHHHHT--GGGGGGB---TT-EEEEE CS
  His_Phos_1 146 sHggvirallarllglpleelrrleldnaslsvle 180
                 sH  ++++l a+++  +lee+    ++++++ +++
  KOO20961.1 353 SHVSTLQVLSAYFTANSLEEALATSIPHHTVIEFK 387
                 ********************999999887776655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (446 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       384  (0.0214178); expected 358.6 (0.02)
Passed bias filter:                      353  (0.0196888); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.49u 0.26s 00:00:00.75 Elapsed: 00:00:00.42
# Mc/sec: 3168.19
//
Query:       KOO20962.1  [L=678]
Description: anaphase-promoting complex subunit 2-like protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.7e-22   79.0   0.1    7.4e-22   77.6   0.1    1.8  1  ANAPC2     Anaphase promoting complex (APC) subunit 2
    2.8e-21   75.8   0.0    6.5e-21   74.6   0.0    1.5  2  Cullin     Cullin family
     0.0036   17.8   3.5      0.081   13.4   0.0    4.2  5  TilS       TilS substrate binding domain
  ------ inclusion threshold ------
      0.011   15.9   0.7       0.54   10.4   0.2    3.5  3  MCD_N      Malonyl-CoA decarboxylase N-terminal domain
      0.014   15.4   0.0      0.053   13.6   0.0    2.0  1  FeoC       FeoC like transcriptional regulator
      0.065   13.3   0.0        0.2   11.8   0.0    1.8  1  AAA_lid_5  Midasin AAA lid domain


Domain annotation for each model (and alignments):
>> ANAPC2  Anaphase promoting complex (APC) subunit 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   77.6   0.1   2.5e-25   7.4e-22       1      60 []     614     676 ..     614     676 .. 0.97

  Alignments for each domain:
  == domain 1  score: 77.6 bits;  conditional E-value: 2.5e-25
      ANAPC2   1 fIvgMLtNlgslpleRIhsmLkmfvpk...degydisdeeLkefLdelvkegkLelsgGkYkL 60 
                 ++ gMLtNl +lpl RI +mL+mfvp+   d gyd s+ eL++fL++lv++gkLels G+Yk+
  KOO20962.1 614 YVIGMLTNLTELPLARINNMLRMFVPAsggDRGYDRSEAELQRFLQRLVEDGKLELSAGMYKI 676
                 9************************8877999*****************************96 PP

>> Cullin  Cullin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.0      0.65   1.9e+03     301     338 ..      17      54 ..      14      81 .. 0.83
   2 !   74.6   0.0   2.2e-24   6.5e-21     396     587 ..     363     551 ..     348     572 .. 0.89

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 0.65
      Cullin 301 kektedakkyveklLelkdkfdklvkeafnndkefeka 338
                 k+++e ++++  +l+e   + + +v+   ++++e+ ++
  KOO20962.1  17 KHQREHPEQWTPELIETTASWTVIVRSIVQSQQEIMAS 54 
                 46789999*****************9999988877655 PP

  == domain 2  score: 74.6 bits;  conditional E-value: 2.2e-24
      Cullin 396 dKDvFekyYkkhLakRLllgksasddaEksmiskLkeecGseftskLegMfkDiklskdlnkefkeyleeekkkkkkvdlsvkVLtagaWpterskese 494
                  + +F + ++++La  Ll     + d E + ++ Lk+  G +  s+ e M+kDi+ sk  +++ +++ ++ +++     l++++++  +Wp  ++    
  KOO20962.1 363 SRALFVNEFRNMLADKLLTASDYDTDREVRNLELLKKRFGETALSQCEVMLKDIAESKRNTRAIQQHFDDGSAR----VLDATIVSRLCWPALAN---- 453
                 5789999************************************************************9855555....89***********7555.... PP

      Cullin 495 vsvklpeeledlieeFeefYks.....khsgrkLtWlhslgsaelkatfpkkky.elqvstfqmvvLllFndeeeklsyeeiqeatglpekeLkrtLqs 587
                 ++++lp+ l + + ++e+ Y +         rkL W+++lg+++l +tf +++  ++ +s +++ +L +F  ++ ++s++ ++++ +++ + Lk+ L  
  KOO20962.1 454 ETFELPAALVSEMARYEKQYAHgpymhIKAPRKLVWKPALGMVTLDVTFADRTVkNVRCSPLHATILDAFG-TQPQWSLRTLSAKLKVDAQTLKKRLAL 551
                 46*****************988666545788********************96669***************.559********************9974 PP

>> TilS  TilS substrate binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.0       1.4   4.2e+03      10      35 ..     124     150 ..     122     157 .. 0.78
   2 ?   -2.1   0.0       1.9   5.6e+03      20      43 ..     166     191 ..     165     202 .. 0.71
   3 ?   -1.7   0.1       1.4   4.3e+03       4      18 ..     216     230 ..     214     231 .. 0.87
   4 ?    1.3   0.0      0.16   4.9e+02      22      52 ..     247     280 ..     245     284 .. 0.77
   5 !   13.4   0.0   2.7e-05     0.081       4      61 ..     620     678 .]     619     678 .] 0.88

  Alignments for each domain:
  == domain 1  score: -1.7 bits;  conditional E-value: 1.4
                 -HHHHHHHHHHHHHHTT.TT--HHHHH CS
        TilS  10 sparqrrlLRrWLaqlg.lpmpsaahL 35 
                 s+a qrr+  +++a+ + l++   a+L
  KOO20962.1 124 SAAVQRRIQAAFFAATHeLSAYVGAQL 150
                 899999999999999887766666666 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 1.9
                 HHHHHTT...TT--HHHHHHH.HHHHH CS
        TilS  20 rWLaqlg...lpmpsaahLeellrqll 43 
                 rWLa+l+    +++ ++++ e l +l+
  KOO20962.1 166 RWLARLQfflRQALGSLRIGE-LFDLI 191
                 799999887655888888887.66665 PP

  == domain 3  score: -1.7 bits;  conditional E-value: 1.4
                 HHHHHS-HHHHHHHH CS
        TilS   4 aaLaaLsparqrrlL 18 
                 +a +aLs+a+ +rlL
  KOO20962.1 216 DAVRALSAAIEARLL 230
                 57799*****99998 PP

  == domain 4  score: 1.3 bits;  conditional E-value: 0.16
                 HHHTTTT--HHHHHHH....HHHHH.H-S-SEEE CS
        TilS  22 LaqlglpmpsaahLeel...lrqlllaaedaqpq 52 
                 +++l +++ps   Le++   +r+ l a++d+  q
  KOO20962.1 247 IKALSCLDPSGVKLEAVserVRAYLKARPDTIRQ 280
                 6788899*********866666666688887665 PP

  == domain 5  score: 13.4 bits;  conditional E-value: 2.7e-05
                 HHHHHS-HHHHHHHHHHHHHHTT...TT--HHHHHHH.HHHHH.H-S-SEEEEE-S..TEEEE CS
        TilS   4 aaLaaLsparqrrlLRrWLaqlg...lpmpsaahLeellrqlllaaedaqpqldlp..gevrR 61 
                 + L +L+ ar +++LR++  ++g     + s+a L+++l++l+   ed++ +l+ +    +rR
  KOO20962.1 620 TNLTELPLARINNMLRMFVPASGgdrGYDRSEAELQRFLQRLV---EDGKLELSAGmyK-IRR 678
                 6799***************999988877***************...8999999988533.887 PP

>> MCD_N  Malonyl-CoA decarboxylase N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.5   0.0      0.23   6.9e+02      72      85 .]      78      91 ..      30      91 .. 0.84
   2 ?   10.4   0.2   0.00018      0.54      13      81 ..     157     229 ..     149     231 .. 0.83
   3 ?   -0.4   0.0      0.44   1.3e+03       3      41 ..     258     295 ..     257     300 .. 0.76

  Alignments for each domain:
  == domain 1  score: 0.5 bits;  conditional E-value: 0.23
                HHHHHHHHHHHHHT CS
       MCD_N 72 aldadlehllssWF 85
                 +d+++  ll++WF
  KOO20962.1 78 VVDRNMYGLLKAWF 91
                489**********9 PP

  == domain 2  score: 10.4 bits;  conditional E-value: 0.00018
                 HHHCC--.SH...HHHHHHHHHCSBHHH.HHHHHHTTSTTHHHHHHHHHHHHHHHTTT-GCHHHHHHHHHHHH CS
       MCD_N  13 eayraakgse...kaeeeLrealeprrq.eLlrrlnlapgGvkfLVdmRadllallkkekelraldadlehll 81 
                 e+y++ + s+   +    Lr+al + r  eL+  +  +p+ + ++ d+R+ l +  ++++++ral a++e  l
  KOO20962.1 157 EEYETPEMSRwlaRLQFFLRQALGSLRIgELFDLIVDFPDSMPAILDLRECLSHTQQHSDAVRALSAAIEARL 229
                 666666656566566777999999988659***********************************99998765 PP

  == domain 3  score: -0.4 bits;  conditional E-value: 0.44
                 B-HHHHHHHHHHHCC--.SHHHHHHHHHHCSBHHHHHHH CS
       MCD_N   3 pdkeavekaieayraakgsekaeeeLrealeprrqeLlr 41 
                 +  eav++ ++ay +a+  ++  + + + + p+ +eLl 
  KOO20962.1 258 VKLEAVSERVRAYLKAR-PDTIRQIVTSLTDPETSELLE 295
                 5668999999***9999.556666667777788888886 PP

>> FeoC  FeoC like transcriptional regulator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.0   1.8e-05     0.053      10      46 ..     524     560 ..     518     568 .. 0.84

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 1.8e-05
        FeoC  10 eergrvslkeLsrhfkaspealeamLeqwvrkGrvek 46 
                  ++ + sl+ Ls ++k+++++l++ L++w+ +G + +
  KOO20962.1 524 GTQPQWSLRTLSAKLKVDAQTLKKRLALWINRGFILE 560
                 5667889*************************97655 PP

>> AAA_lid_5  Midasin AAA lid domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   6.5e-05       0.2      38      93 ..     517     628 ..     507     640 .. 0.65

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 6.5e-05
   AAA_lid_5  38 keltdgagqkphfSlRtlsraLsyartilkl...aglrr.....................................................alyeGfs 80 
                  ++ d+ g +p++SlRtls  L++ +++lk+   + ++r                                                      +ye ++
  KOO20962.1 517 ATILDAFGTQPQWSLRTLSAKLKVDAQTLKKrlaLWINRgfilekgrsadgdvnyeapthlgkggegrpggeddeeegagggaaeaqldaemRVYEQYV 615
                 46889*****************98666654434222333666666666666666666666666666666666666666666666666666666666666 PP

   AAA_lid_5  81 msFltqLdsesrk 93 
                 +  lt+L +   +
  KOO20962.1 616 IGMLTNLTELPLA 628
                 6666666655555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (678 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       678  (0.0378158); expected 358.6 (0.02)
Passed bias filter:                      587  (0.0327403); expected 358.6 (0.02)
Passed Vit filter:                        47  (0.00262145); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.65u 0.30s 00:00:00.95 Elapsed: 00:00:00.46
# Mc/sec: 4440.43
//
Query:       KOO20963.1  [L=156]
Description: NADH-ubiquinone oxidoreductase subunit [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.6e-26   91.7   0.5    1.5e-12   47.6   0.1    2.0  2  GRIM-19   GRIM-19 protein
  ------ inclusion threshold ------
      0.095   12.6   0.1       0.13   12.2   0.1    1.1  1  YfdX      YfdX protein
       0.13   12.0   0.1       0.24   11.2   0.1    1.3  1  DUF2555   Protein of unknown function (DUF2555)


Domain annotation for each model (and alignments):
>> GRIM-19  GRIM-19 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.0   0.0   6.8e-15   4.1e-11       2      58 ..      19      75 ..      18      92 .. 0.89
   2 !   47.6   0.1   2.6e-16   1.5e-12      57     123 ..      92     150 ..      81     153 .. 0.93

  Alignments for each domain:
  == domain 1  score: 43.0 bits;  conditional E-value: 6.8e-15
                XXXXXXXSTTXSXXXXSXXXXXXXSXSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
     GRIM-19  2 vkQdmpPkGGYapinykrklpktllsglsllalviavtavglyavlksnkerrreki 58
                + Qd pP+GG+++++++r lp  +ls ++l+ +++ ++++g+y++++ n++rr+ + 
  KOO20963.1 19 FVQDGPPPGGFPAVKIQRSLPAGGLSSVALMSGLVLTFTYGMYQIIAANRQRRQARR 75
                78***********************************************99998763 PP

  == domain 2  score: 47.6 bits;  conditional E-value: 2.6e-16
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSSSSXXXSX....XXSSSS...XSXXXXX CS
     GRIM-19  57 kiekrsarlailPlllAerdrrylkqlrknrdeeaklmkdvpgWkvGtyygepvYktlekdrwvePa 123
                 + e+ ++r+a+lP+l+Ae+d +      k +++ea+lmkdvp+W+ G     +vYkt    r+++P+
  KOO20963.1  92 NREELDIRMAVLPFLTAESDVKAAFIKSKMLENEAELMKDVPNWEAG----ASVYKT----RYMSPM 150
                 57999******************9999********************....******....999997 PP

>> YfdX  YfdX protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.1   2.1e-05      0.13      71     120 ..      66     115 ..      57     127 .. 0.92

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 2.1e-05
                 HHHHHHHHHHHHHTT-HHHHHHHHHHTT-EEEEEEEEEEHHHHHHHHHHH CS
        YfdX  71 kkaaikkanellkkgdtqaArelLkllgseidittallPLatypaavkkA 120
                 +++++++a++++++g   +  ++L+  ++e+di +a+lP  t + +vk+A
  KOO20963.1  66 ANRQRRQARRAFEAGSALQLLRALAFNREELDIRMAVLPFLTAESDVKAA 115
                 577889999***************************************99 PP

>> DUF2555  Protein of unknown function (DUF2555)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.1     4e-05      0.24      26      47 ..      75      96 ..      65      98 .. 0.89

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 4e-05
     DUF2555 26 npFegLkDWhlLRaiafqrpeL 47
                 +Fe+ +  +lLRa+af+r+eL
  KOO20963.1 75 RAFEAGSALQLLRALAFNREEL 96
                5788888889***********9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (156 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       511  (0.0285013); expected 358.6 (0.02)
Passed bias filter:                      424  (0.0236488); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.41u 0.24s 00:00:00.64 Elapsed: 00:00:00.40
# Mc/sec: 1167.43
//
Query:       KOO20964.1  [L=206]
Description: 50s ribosomal protein l13 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
      5e-48  162.5   0.0    6.3e-48  162.2   0.0    1.1  1  Ribosomal_L13  Ribosomal protein L13


Domain annotation for each model (and alignments):
>> Ribosomal_L13  Ribosomal protein L13
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  162.2   0.0   3.5e-52   6.3e-48       1     125 []      65     189 ..      65     189 .. 0.99

  Alignments for each domain:
  == domain 1  score: 162.2 bits;  conditional E-value: 3.5e-52
                    -EEEEEETTSBHHHHHHHHHHHHHTTTSTT--TTS--S-EEEEEEGGCBB-SSTHHTT-EEEEE-SSTTSEEEEEHHHHHCCSHHHHHHHHHHCCS CS
  Ribosomal_L13   1 kWyviDAegqvlgrlaskiakvLrGkhkptytphvdcGdyvvvinaekvaltgkkleqkvyyrhtgypgglkevtakellekkpeeilekaVkgmL 96 
                    kW+viDAeg  lgr+as++ak+L Gkhk+t+t+ +d+Gd v+++n+ekv +tg+k+++k+y+rh+g+pgg+   t++el+++ pe+i+eka+ gmL
     KOO20964.1  65 KWVVIDAEGLRLGRMASEAAKLLLGKHKATFTHGADVGDAVIIVNCEKVIVTGNKAKDKFYRRHSGRPGGMTIETFEELQARIPERIVEKAIVGML 160
                    7*********************************************************************************************** PP

                    -SSHHHHHHGCTEEEESSSTTSGGGGSCE CS
  Ribosomal_L13  97 pknklgrrrlkrLkvyageehpheaqkpe 125
                    pkn+ gr+ +++Lkvy+g++hphe q+pe
     KOO20964.1 161 PKNSHGRNLFRHLKVYKGPSHPHESQSPE 189
                    **************************985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (206 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       444  (0.0247643); expected 358.6 (0.02)
Passed bias filter:                      405  (0.0225891); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.22s 00:00:00.63 Elapsed: 00:00:00.37
# Mc/sec: 1653.09
//
Query:       KOO20965.1  [L=499]
Description: hypothetical protein Ctob_000384 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
  ------ inclusion threshold ------
      0.024   13.9   4.4       0.13   11.4   2.5    2.1  2  DUF2046          Uncharacterized conserved protein H4 (DUF204
      0.056   13.9   2.6        5.2    7.5   0.7    2.3  2  Fez1             Fez1
       0.17   11.7  10.2       0.81    9.5   9.8    2.2  2  Gly-zipper_YMGG  YMGG-like Gly-zipper
       0.29   10.5   1.0       0.67    9.3   0.5    1.7  2  NBP1             Fungal Nap binding protein NBP1
        1.2    9.5   7.9        0.3   11.4   2.6    2.3  2  DUF641           Plant protein of unknown function (DUF641)
        1.7    9.4   4.7         23    5.7   0.4    2.6  2  DUF2203          Uncharacterized conserved protein (DUF2203)
        2.4    8.2  10.0        1.5    8.8   1.2    2.5  2  Gly-zipper_Omp   Glycine zipper
        3.4    7.9  22.7        1.1    9.5   7.4    2.9  3  ATG16            Autophagy protein 16 (ATG16)
        6.1    6.9  20.3        5.7    7.0   7.2    2.7  2  TPR_MLP1_2       TPR/MLP1/MLP2-like protein


Domain annotation for each model (and alignments):
>> DUF2046  Uncharacterized conserved protein H4 (DUF2046)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.0   0.0      0.05     1e+02     152     210 ..      20      78 ..       4     111 .. 0.51
   2 ?   11.4   2.5   6.7e-05      0.13     199     265 ..     172     238 ..     159     247 .. 0.82

  Alignments for each domain:
  == domain 1  score: 2.0 bits;  conditional E-value: 0.05
     DUF2046 152 vlakqtkleqlrrekvelentleqeqealvnrlWkrldkleae..krllqekldqpvsapp 210
                 + + +++  +lrr ++e   +     eal   l k+ ++l +e   rl+  kl qp  a p
  KOO20965.1  20 AAELRSQAAELRRARIEATASAA-RLEAL-GTLIKQQQQLASElqIRLMGAKLPQPALAMP 78 
                 33333444566776666544433.34555.4677777777666224667778887754433 PP

  == domain 2  score: 11.4 bits;  conditional E-value: 6.7e-05
     DUF2046 199 qekldqpvsappsPrdlvsegdtaeklsahikalrkeverlrkqlkksqkeheekmaqfakeerqir 265
                 q+  +q+  + ++   +++++  a +l ++ ++lr+ v+ lr+qlk++ + h+++++   +e rq+r
  KOO20965.1 172 QRCDEQRARHQAASERVSRSEAEARRLLTETHQLRASVRLLREQLKAAAQSHATELTVVHSEMRQLR 238
                 54444555555555556668889999**************************************998 PP

>> Fez1  Fez1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.1   0.0    0.0066        13      52     106 ..       7      61 ..       3     116 .. 0.73
   2 ?    7.5   0.7    0.0026       5.2      39     153 ..     180     225 ..     130     287 .. 0.57

  Alignments for each domain:
  == domain 1  score: 6.1 bits;  conditional E-value: 0.0066
        Fez1  52 eeikeleesleektlelevcenelqrkkseaellrekvekleeelkelreelsel 106
                 +ei++l+++++++++el    +el+r++ ea+    ++e+l + +k+ ++ +sel
  KOO20965.1   7 DEITRLQSTVRSQAAELRSQAAELRRARIEATASAARLEALGTLIKQQQQLASEL 61 
                 4567777777777777777777777777777777777777766666666544443 PP

  == domain 2  score: 7.5 bits;  conditional E-value: 0.0026
        Fez1  39 qlrelrakleekeeeikeleesleektlelevcenelqrkkseaellrekvekleeelkelreelselsleeeeaalesdeakaqrqeaeeleelkrev 137
                 +                             +   ++++r+++ea  l                                          +e+++l+++v
  KOO20965.1 180 R----------------------------HQAASERVSRSEAEARRLL-----------------------------------------TETHQLRASV 209
                 1............................1111122222222222222.........................................2222222222 PP

        Fez1 138 erlraeLkeerqkkee 153
                   lr++Lk   q++ +
  KOO20965.1 210 RLLREQLKAAAQSHAT 225
                 2222222222222222 PP

>> Gly-zipper_YMGG  YMGG-like Gly-zipper
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   9.8    0.0004      0.81       9      44 ..     329     396 ..     327     398 .. 0.88
   2 ?    9.4   1.3   0.00042      0.83       7      23 ..     381     398 ..     376     409 .. 0.71

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 0.0004
                      XXXXXXXXXXXXXX.XXXXXX.................................XXXXXXXXXXXXXXXX CS
  Gly-zipper_YMGG   9 iGAaaGAvvGaliG.sgggkG.................................AaiGAaaGalaGgaiG 44 
                       G+++GA++Ga +G      G                                  ++GA  Ga +G+++G
       KOO20965.1 329 RGGGVGALGGAPAGpR--DEGelshaedktadleafendrllgaeltwhiadeeGLVGAMLGASVGAMVG 396
                      79************42..34677788999*********************99998999999999999998 PP

  == domain 2  score: 9.4 bits;  conditional E-value: 0.00042
                      XXXXXXXXXXXXXXXX.X CS
  Gly-zipper_YMGG   7 AaiGAaaGAvvGaliG.s 23 
                      +++GA +GA vGa +G +
       KOO20965.1 381 GLVGAMLGASVGAMVGvE 398
                      567888888888888853 PP

>> NBP1  Fungal Nap binding protein NBP1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.0      0.66   1.3e+03     187     215 ..       6      34 ..       2      50 .. 0.85
   2 ?    9.3   0.5   0.00034      0.67     115     177 ..     154     224 ..     148     244 .. 0.75

  Alignments for each domain:
  == domain 1  score: -1.5 bits;  conditional E-value: 0.66
        NBP1 187 eDqvvlLqkkikklesklkdlekeLeitk 215
                  D+++ Lq  +++ + +l +   eL+ ++
  KOO20965.1   6 TDEITRLQSTVRSQAAELRSQAAELRRAR 34 
                 69999999999999999999999998766 PP

  == domain 2  score: 9.3 bits;  conditional E-value: 0.00034
        NBP1 115 nasenlnallp.......seelksreerkklkdrilrseaFkkkl.lelkydkqmleqLrrgrssnkserr 177
                 +a+++l++++p       +  +++r +++++++r+ rsea  ++l +e +  ++ ++ Lr++ +   +++ 
  KOO20965.1 154 RACSSLKQMVPlaeaaavQRCDEQRARHQAASERVSRSEAEARRLlTETHQLRASVRLLREQLKAAAQSHA 224
                 6899999999999988866677888899999*********8777615777777888888888877777666 PP

>> DUF641  Plant protein of unknown function (DUF641)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.4   0.3      0.37   7.5e+02      97     120 ..      12      35 ..       3      68 .. 0.52
   2 ?   11.4   2.6   0.00015       0.3      45     122 ..     148     223 ..     135     229 .. 0.85

  Alignments for each domain:
  == domain 1  score: 0.4 bits;  conditional E-value: 0.37
      DUF641  97 leaelkakdseieeLkekLeeaek 120
                 l++ ++++ +e+ +  ++L++a+ 
  KOO20965.1  12 LQSTVRSQAAELRSQAAELRRARI 35 
                 333333333333333333333322 PP

  == domain 2  score: 11.4 bits;  conditional E-value: 0.00015
      DUF641  45 avvseLkklselkrlyrkkqkkkaseaeeseleaeiqeqrsllktyeitvkkleaelkakdseieeLkekLeeaeksn 122
                  +v+ L+  s+lk++    + +    ++  e +a+ q   + +   e+ +++l +e+++ ++ +  L+e+L++a +s+
  KOO20965.1 148 RLVAALRACSSLKQMVPLAEAAAV--QRCDEQRARHQAASERVSRSEAEARRLLTETHQLRASVRLLREQLKAAAQSH 223
                 5899***********988877664..5788888888999999******************************988765 PP

>> DUF2203  Uncharacterized conserved protein (DUF2203)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.7   0.4     0.011        23      33      83 ..      13      58 ..       3      70 .. 0.64
   2 ?    4.9   0.4     0.021        41      48      80 ..     181     213 ..     139     257 .. 0.59

  Alignments for each domain:
  == domain 1  score: 5.7 bits;  conditional E-value: 0.011
     DUF2203 33 eeeleeakaeaekseaaeleaeleeleaeieelveeieelGvevkdleagl 83
                ++ ++++ ae      ++++ael++++ e+ +  +++e+lG  +k+ +++ 
  KOO20965.1 13 QSTVRSQAAE-----LRSQAAELRRARIEATASAARLEALGTLIKQQQQLA 58
                3233222222.....667778888888888888888888888888877654 PP

  == domain 2  score: 4.9 bits;  conditional E-value: 0.021
     DUF2203  48 aaeleaeleeleaeieelveeieelGvevkdle 80 
                 ++++ +++++ eae+++l++e ++l + v+ l+
  KOO20965.1 181 HQAASERVSRSEAEARRLLTETHQLRASVRLLR 213
                 444444444444444444444444444444332 PP

>> Gly-zipper_Omp  Glycine zipper
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.4   2.0      0.04        80       6      17 ..     330     341 ..     324     349 .. 0.55
   2 ?    8.8   1.2   0.00077       1.5       1      14 [.     383     396 ..     377     410 .. 0.68

  Alignments for each domain:
  == domain 1  score: 3.4 bits;  conditional E-value: 0.04
  Gly-zipper_Omp   6 GAaaGaliGgav 17 
                     G+ +Gal G+ +
      KOO20965.1 330 GGGVGALGGAPA 341
                     333344433333 PP

  == domain 2  score: 8.8 bits;  conditional E-value: 0.00077
  Gly-zipper_Omp   1 iGaaiGAaaGaliG 14 
                     +Ga++GA +Ga +G
      KOO20965.1 383 VGAMLGASVGAMVG 396
                     46666666666665 PP

>> ATG16  Autophagy protein 16 (ATG16)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.4   3.9    0.0048       9.7     103     157 ..       8      62 ..       3      67 .. 0.75
   2 ?    9.5   7.4   0.00053       1.1      33     169 ..      93     243 ..      84     248 .. 0.67
   3 ?   -3.0   0.1       3.5     7e+03     166     185 ..     348     368 ..     347     368 .. 0.82

  Alignments for each domain:
  == domain 1  score: 6.4 bits;  conditional E-value: 0.0048
       ATG16 103 rllelneelqkleeklkedeerlaeleaeraaletklkdreeelrekeklvqdlq 157
                  +++l+++++ + ++l++++++l++++ e +a   +l+ +   ++++++l  +lq
  KOO20965.1   8 EITRLQSTVRSQAAELRSQAAELRRARIEATASAARLEALGTLIKQQQQLASELQ 62 
                 5677777888888888888888888888888888888888888888887777766 PP

  == domain 2  score: 9.5 bits;  conditional E-value: 0.00053
       ATG16  33 aleaenaklekaaasaks...sksskksakekeasasqsnskqsakiqsleqklaqlreelaelyksrgelaqrllelnee....lqkleeklkedeer 124
                 +l+a +a+l +   s  +   s s+++++k+ +  +s+     +a+ ++  +++  l   l +++++++ l+q++  ++++     ++++++ ++ +er
  KOO20965.1  93 HLDAAQASLAQCVLSLAAggtSDSPASVSKRLPPPPSD----ADASDSEGVDEVDDLSIRLVAALRACSSLKQMVPLAEAAavqrCDEQRARHQAASER 187
                 44445555533333333355444555555555555444....667777777788888888999999999999999888876222246677788888899 PP

       ATG16 125 laeleaeraaletklkdreeelrekeklvq...........dlqDElsaLqlqlnq 169
                 + + eae ++l t+  ++++ +r +++ ++            ++ E+ +L+l+l+ 
  KOO20965.1 188 VSRSEAEARRLLTETHQLRASVRLLREQLKaaaqshateltVVHSEMRQLRLALST 243
                 99999999999999888888888877777666667777777777777777777765 PP

  == domain 3  score: -3.0 bits;  conditional E-value: 3.5
       ATG16 166 qlnqaEeklrklek.ENkeLv 185
                 +l++aE+k  +le+ EN  L+
  KOO20965.1 348 ELSHAEDKTADLEAfENDRLL 368
                 689999999999976887775 PP

>> TPR_MLP1_2  TPR/MLP1/MLP2-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.7   5.2     0.014        29      60     105 ..      14      61 ..       3      64 .. 0.56
   2 ?    7.0   7.2    0.0029       5.7      42     109 ..     171     238 ..     150     243 .. 0.86

  Alignments for each domain:
  == domain 1  score: 4.7 bits;  conditional E-value: 0.014
  TPR_MLP1_2  60 qalreelnelkaeiaelkaeaesakaeleesee..sweeqkeelekel 105
                 +++r++++el++++ael+ ++ +a+a+ ++ e+   + +q+++l +el
  KOO20965.1  14 STVRSQAAELRSQAAELRRARIEATASAARLEAlgTLIKQQQQLASEL 61 
                 356777777777777777666555555444443115556666665555 PP

  == domain 2  score: 7.0 bits;  conditional E-value: 0.0029
  TPR_MLP1_2  42 qqkYerelvkhaedvkelqalreelnelkaeiaelkaeaesakaeleeseesweeqkeelekelsele 109
                  q+  ++   h ++++ +++  +e+ +l +e ++l+a++  ++++l+++ +s +++ +   +e+++l+
  KOO20965.1 171 VQRCDEQRARHQAASERVSRSEAEARRLLTETHQLRASVRLLREQLKAAAQSHATELTVVHSEMRQLR 238
                 4556778889******************************************9999999999998876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (499 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1183  (0.0659825); expected 358.6 (0.02)
Passed bias filter:                      553  (0.0308439); expected 358.6 (0.02)
Passed Vit filter:                        82  (0.0045736); expected 17.9 (0.001)
Passed Fwd filter:                        14  (0.000780858); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.62u 0.27s 00:00:00.89 Elapsed: 00:00:00.43
# Mc/sec: 3472.68
//
Query:       KOO20966.1  [L=137]
Description: hypothetical protein Ctob_000387 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (137 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       334  (0.018629); expected 358.6 (0.02)
Passed bias filter:                      283  (0.0157845); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.25s 00:00:00.63 Elapsed: 00:00:00.40
# Mc/sec: 1020.65
//
Query:       KOO20967.1  [L=1432]
Description: hypothetical protein Ctob_000386 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1432 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       340  (0.0189637); expected 358.6 (0.02)
Passed bias filter:                      255  (0.0142228); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.74u 0.27s 00:00:01.01 Elapsed: 00:00:00.45
# Mc/sec: 9571.06
//
Query:       KOO20968.1  [L=698]
Description: hypothetical protein Ctob_000389 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    7.9e-30  104.2   0.0    1.8e-29  103.0   0.0    1.6  1  Pro_isomerase  Cyclophilin type peptidyl-prolyl cis-trans iso
    9.6e-11   41.9   0.0      2e-10   40.9   0.0    1.5  1  FKBP_C         FKBP-type peptidyl-prolyl cis-trans isomerase
    6.8e-05   22.5   0.1       0.44   10.5   0.0    2.7  2  TPR_1          Tetratricopeptide repeat
     0.0048   16.9   1.5        2.9    8.2   0.0    3.3  3  TPR_2          Tetratricopeptide repeat
  ------ inclusion threshold ------
      0.032   13.7   0.0      0.054   13.0   0.0    1.3  1  GP11           GP11 baseplate wedge protein
       0.05   13.7   0.1       0.17   12.0   0.0    2.0  2  Fis1_TPR_C     Fis1 C-terminal tetratricopeptide repeat
      0.055   13.8   2.1       0.26   11.6   1.1    2.5  2  TPR_12         Tetratricopeptide repeat
       0.55   10.4   2.3       0.97    9.6   0.1    2.6  3  TPR_7          Tetratricopeptide repeat
       0.89    9.8   5.0       0.18   12.0   0.9    2.1  2  TPR_9          Tetratricopeptide repeat
        1.1   10.1   5.2         29    5.6   0.2    4.0  4  TPR_6          Tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> Pro_isomerase  Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  103.0   0.0     1e-32   1.8e-29       9     156 ..     399     603 ..     389     605 .. 0.82

  Alignments for each domain:
  == domain 1  score: 103.0 bits;  conditional E-value: 1e-32
  Pro_isomerase   9 kGrivieLfadkaPktvenFlklvkeg...........fYdgttFhRv........................ikgfmvqgGdptgktsageqekkg 69 
                    + riv+eLf d+aPkt+enF+ l+ +g           +Y+gt+FhR+                         kgf+vqgGd+++++  g      
     KOO20968.1 399 MPRIVFELFVDRAPKTCENFRCLC-TGergvstrgtrlHYKGTKFHRAvptddlpseyinesadgtgrnfeiWKGFLVQGGDISHGDGSGG----- 488
                    669*********************.5558888888999*********99**********************999********999866333..... PP

  Pro_isomerase  70 gesi..raipdEit.sklkh.krGalamartg...........kepnsagsqFfItlke.........aphldgkytvFGkVveGmdvvekiekve 141
                     esi   +++dE   + + h  +G+l+ma +              p+ ++sqFfIt+++           h dg++++FG+VveGm +v++i+k+ 
     KOO20968.1 489 -ESIwgGPFEDELPlDYVCHsGPGLLSMAGSLpmrdkaseemmHVPHRNTSQFFITTNAknaaqggsaIRHFDGHHVCFGRVVEGMSTVNQIHKCL 583
                    .333334899**9988899989*******87778888999999889***********9955555555555************************76 PP

  Pro_isomerase 142 tde......erpkkn.vkivsa 156
                    +d       +  +   v iv++
     KOO20968.1 584 VDPtafhaiD-ER-HsVEIVDC 603
                    6665564322.22.23777776 PP

>> FKBP_C  FKBP-type peptidyl-prolyl cis-trans isomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.9   0.0   1.1e-13     2e-10      10      94 .]     111     190 ..     106     190 .. 0.89

  Alignments for each domain:
  == domain 1  score: 40.9 bits;  conditional E-value: 1.1e-13
                 EEEEEEEEEET.TSSEEEEHCCHTSEEEEETTSSSSCHHHHHHHTTSBTT-EEEEEEEGGGTTTTTTBCTTTB.TTSEEEEEEEEE CS
      FKBP_C  10 tVtvhykgkle.dgkvfdssrsrakplefkvGsgqvikGfeealegmkvGekrtltippelaYgekglaggvippnatLvFeveLl 94 
                 +V+v y + l  + + f+         ef++G+ +v kG+e+ + +m+ Ge+++l++  e+aYg+ g  ++ +pp+  + +eveL+
  KOO20968.1 111 KVKVRYIASLLpECRSFEAA-----VREFVLGEHEVPKGLEKCVGTMRRGETCELICRAEYAYGAVGR-PPDVPPGTSIRYEVELI 190
                 57777777776667777776.....789****************************************.889************97 PP

>> TPR_1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.4   0.1   0.00054      0.97       3      29 ..     265     291 ..     263     293 .. 0.92
   2 !   10.5   0.0   0.00024      0.44       2      33 ..     306     337 ..     305     338 .. 0.96

  Alignments for each domain:
  == domain 1  score: 9.4 bits;  conditional E-value: 0.00054
                 HHHHHHHHHHHTT-HHHHHHHHHHHHH CS
       TPR_1   3 alynlGnayfklgkydeAleyyekALe 29 
                 +l n++++ +k +++  A+ ++ + Le
  KOO20968.1 265 CLLNIAQCALKRNEWSAAERACTETLE 291
                 789********************9998 PP

  == domain 2  score: 10.5 bits;  conditional E-value: 0.00024
                 HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT CS
       TPR_1   2 kalynlGnayfklgkydeAleyyekALelnPn 33 
                 kaly+++ a     ++ +A ++ + +L+l+P+
  KOO20968.1 306 KALYRRAKARTGRSEFSDARADLKAVLSLQPS 337
                 8******************************7 PP

>> TPR_2  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.1       5.6     1e+04       2      28 ..     212     238 ..     211     240 .. 0.71
   2 !    6.2   0.1    0.0071        13       3      29 ..     265     291 ..     263     294 .. 0.91
   3 !    8.2   0.0    0.0016       2.9       2      33 ..     306     337 ..     305     338 .. 0.95

  Alignments for each domain:
  == domain 1  score: -2.8 bits;  conditional E-value: 5.6
       TPR_2   2 ealynlGlayyklgdyeeAleafekAl 28 
                 +al + G   + +g + eA   + +A 
  KOO20968.1 212 QALKAKGTREFGSGLWLEAQVSYHEAS 238
                 566666777777788889999998885 PP

  == domain 2  score: 6.2 bits;  conditional E-value: 0.0071
       TPR_2   3 alynlGlayyklgdyeeAleafekAle 29 
                 +l n++++++k++++  A++a+ + le
  KOO20968.1 265 CLLNIAQCALKRNEWSAAERACTETLE 291
                 6899*****************999887 PP

  == domain 3  score: 8.2 bits;  conditional E-value: 0.0016
       TPR_2   2 ealynlGlayyklgdyeeAleafekAleldPn 33 
                 +aly++++a   + ++ +A+++++++l+l P 
  KOO20968.1 306 KALYRRAKARTGRSEFSDARADLKAVLSLQPS 337
                 69****************************96 PP

>> GP11  GP11 baseplate wedge protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.0     3e-05     0.054      30      84 ..     558     612 ..     539     621 .. 0.91

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 3e-05
                 .........TB-T.T---HHHHTTT--S-BHHHHHHHHHHHH---TTBEEEESS- CS
        GP11  30 lfpggrfnfrqavlGdvtidelakGayePnveaaindlanaaikdvGtiisskda 84 
                  f g ++ f   v G +t++++ k   +P    ai + + + i d G + s++da
  KOO20968.1 558 HFDGHHVCFGRVVEGMSTVNQIHKCLVDPTAFHAIDERHSVEIVDCGHLKSKEDA 612
                 58899999999************************************99998886 PP

>> Fis1_TPR_C  Fis1 C-terminal tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.7   0.0       7.5   1.3e+04       4      28 ..     266     290 ..     265     291 .. 0.74
   2 ?   12.0   0.0   9.4e-05      0.17       4      46 ..     308     350 ..     305     352 .. 0.90

  Alignments for each domain:
  == domain 1  score: -3.7 bits;  conditional E-value: 7.5
                 HHHHHHHHHHHT-HHHHHHHHHHHH CS
  Fis1_TPR_C   4 lYylAlGhyklgeYseArryvdalL 28 
                 l  +A   +k  e s A r +   L
  KOO20968.1 266 LLNIAQCALKRNEWSAAERACTETL 290
                 5566667788899999999997766 PP

  == domain 2  score: 12.0 bits;  conditional E-value: 9.4e-05
                 HHHHHHHHHHHT-HHHHHHHHHHHHHHTTS-HHHHHHHHHHHH CS
  Fis1_TPR_C   4 lYylAlGhyklgeYseArryvdalLeiEPenrQaqsLkelied 46 
                 lY  A + +   e+s+Ar  ++a+L+++P+ r a++L e ++d
  KOO20968.1 308 LYRRAKARTGRSEFSDARADLKAVLSLQPSSREARELWESLKD 350
                 788888888889*************************998887 PP

>> TPR_12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   1.1   0.00014      0.26       2      74 ..     263     334 ..     262     337 .. 0.93
   2 ?   -0.4   0.0      0.83   1.5e+03      27      55 ..     339     363 ..     335     369 .. 0.81

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 0.00014
      TPR_12   2 vatalnnlaavlrrlgrydeAlellekaleiarrllGpdhpltattlrnLgrlyralgryeeAlelleealai 74 
                 va++l n+a++ +++ ++  A++ + + le+ +  lG +++  + +l+  + +   + ++ +A++ l+ +l +
  KOO20968.1 263 VACLL-NIAQCALKRNEWSAAERACTETLERLTDPLGLEKESHIKALYRRAKARTGRSEFSDARADLKAVLSL 334
                 79999.**************************9999******************9999******999988876 PP

  == domain 2  score: -0.4 bits;  conditional E-value: 0.83
      TPR_12  27 ekaleiarrllGpdhpltattlrnLgrly 55 
                 ++a+e++++l  +d+  ++++ r  g +y
  KOO20968.1 339 REARELWESL--KDR--ELSASRSEGKVY 363
                 689******9..999..788888888877 PP

>> TPR_7  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   0.1   0.00054      0.97       1      29 [.     265     294 ..     265     302 .. 0.85
   2 ?   -2.5   0.1       4.1   7.4e+03       1      31 [.     307     335 ..     307     340 .. 0.70
   3 ?   -3.2   0.0       6.7   1.2e+04      16      28 ..     639     649 ..     636     653 .. 0.85

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 0.00054
       TPR_7   1 aLlnLarlysrlGdyeeAielyeqsL.alt 29 
                 +Lln+a++  ++++++ A++ +++ L +lt
  KOO20968.1 265 CLLNIAQCALKRNEWSAAERACTETLeRLT 294
                 79**********************774444 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 4.1
       TPR_7   1 aLlnLarlysrlGdyeeAielyeqsLaltkd 31 
                 aL++ a ++  + ++++A   +++  +l  +
  KOO20968.1 307 ALYRRAKARTGRSEFSDARADLKA--VLSLQ 335
                 567777888888899999888888..55555 PP

  == domain 3  score: -3.2 bits;  conditional E-value: 6.7
       TPR_7  16 eeAielyeqsLal 28 
                 +eA+e+ ++  a+
  KOO20968.1 639 DEAVEVITR--AT 649
                 79***9999..65 PP

>> TPR_9  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.2         4   7.2e+03      12      30 ..      49      67 ..      45      68 .. 0.84
   2 ?   12.0   0.9    0.0001      0.18       3      68 ..     271     344 ..     269     349 .. 0.84

  Alignments for each domain:
  == domain 1  score: -2.8 bits;  conditional E-value: 4
       TPR_9 12 eralavverllllaPddpe 30
                 +a+a++e   ++ P++p 
  KOO20968.1 49 TAAIAAAEVPAAWSPEPPA 67
                5899999999999999986 PP

  == domain 2  score: 12.0 bits;  conditional E-value: 0.0001
       TPR_9   3 aiaireedweralavverllll........aPddpeerrdRGlllaqlGclsaAladLeaylalapdapdaeai 68 
                 ++a+ +++w++a +++   l          +  ++  ++ R+ ++  +  +s A+adL a l+l+p+ ++a+ +
  KOO20968.1 271 QCALKRNEWSAAERACTETLERltdplgleKESHIKALYRRAKARTGRSEFSDARADLKAVLSLQPSSREAREL 344
                 6778888888888877777776688888888999999*****************************99998876 PP

>> TPR_6  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.6   0.1     0.033        59       2      24 ..     265     287 ..     264     295 .. 0.75
   2 ?    5.6   0.2     0.016        29       2      33 .]     307     338 ..     306     338 .. 0.93
   3 ?   -2.9   0.0         8   1.4e+04      18      29 ..     340     351 ..     339     351 .. 0.84
   4 ?   -3.4   0.1        10   1.8e+04      13      22 ..     655     664 ..     652     666 .. 0.76

  Alignments for each domain:
  == domain 1  score: 4.6 bits;  conditional E-value: 0.033
                 HHHHHHHHHHHHHHHHHHHHHHH CS
       TPR_6   2 AlyklalsyrklgdtdkAleale 24 
                 +l+++a++ +k +++++A +a  
  KOO20968.1 265 CLLNIAQCALKRNEWSAAERACT 287
                 69*********889998877543 PP

  == domain 2  score: 5.6 bits;  conditional E-value: 0.016
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHH-TT- CS
       TPR_6   2 AlyklalsyrklgdtdkAlealerlikeYPdS 33 
                 Aly++a+++    + ++A++ l+ +++  P S
  KOO20968.1 307 ALYRRAKARTGRSEFSDARADLKAVLSLQPSS 338
                 9*********877**************99987 PP

  == domain 3  score: -2.9 bits;  conditional E-value: 8
                 HHHHHHHHHHHH CS
       TPR_6  18 kAlealerlike 29 
                 +A+e++e+l ++
  KOO20968.1 340 EARELWESLKDR 351
                 8******99875 PP

  == domain 4  score: -3.4 bits;  conditional E-value: 10
                 HHHHHHHHHH CS
       TPR_6  13 lgdtdkAlea 22 
                 +gdtd+A  a
  KOO20968.1 655 AGDTDRAAPA 664
                 58****9765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (698 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       438  (0.0244297); expected 358.6 (0.02)
Passed bias filter:                      366  (0.0204139); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.61u 0.26s 00:00:00.87 Elapsed: 00:00:00.44
# Mc/sec: 4738.25
//
Query:       KOO20969.1  [L=175]
Description: DNA-directed RNA polymerase ii subunit rpb9-like protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    5.3e-10   39.0  13.2    6.6e-09   35.5   4.9    3.3  3  TFIIS_C         Transcription factor S-II (TFIIS)
    2.5e-06   27.2   1.4    2.5e-06   27.2   1.4    2.9  3  RNA_POL_M_15KD  RNA polymerases M/15 Kd subunit
    0.00027   21.2   9.9       0.11   12.9   0.0    3.5  3  GFA             Glutathione-dependent formaldehyde-activating
  ------ inclusion threshold ------
       0.03   14.4   0.7       0.03   14.4   0.7    2.7  2  DZR             Double zinc ribbon
       0.36   10.4   6.7        8.2    6.0   0.0    3.8  3  TF_Zn_Ribbon    TFIIB zinc-binding
        0.7    9.9  12.4        4.8    7.2   2.9    2.8  3  Zn_Tnp_IS1595   Transposase zinc-ribbon domain
        2.5    8.1   0.0        2.5    8.1   0.0    3.8  4  PhnA_Zn_Ribbon  PhnA Zinc-Ribbon
        5.1    7.1  10.1        4.5    7.3   1.9    3.5  3  Nudix_N_2       Nudix N-terminal


Domain annotation for each model (and alignments):
>> TFIIS_C  Transcription factor S-II (TFIIS)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.4   0.1      0.03        68      30      36 ..      70      76 ..      64      78 .. 0.59
   2 ?    4.3   0.2     0.017        38      30      37 ..      92      99 ..      86     105 .. 0.67
   3 !   35.5   4.9   2.9e-12   6.6e-09       3      38 ..     139     173 ..     137     174 .. 0.96

  Alignments for each domain:
  == domain 1  score: 3.4 bits;  conditional E-value: 0.03
     TFIIS_C 30 kCtkCgh 36
                 C +Cg+
  KOO20969.1 70 LCPECGN 76
                5555554 PP

  == domain 2  score: 4.3 bits;  conditional E-value: 0.017
     TFIIS_C 30 kCtkCghr 37
                +C +C+h+
  KOO20969.1 92 VCRNCQHT 99
                56666654 PP

  == domain 3  score: 35.5 bits;  conditional E-value: 2.9e-12
     TFIIS_C   3 CpkCgsreayffqlQtRsaDEpmtvfykCtkCghrW 38 
                 C +C+++ea+ffq+ tR +DE+m +++ CtkC +rW
  KOO20969.1 139 CTNCQHTEAVFFQAVTR-GDEGMKLIFMCTKCAYRW 173
                 ****************9.7***************** PP

>> RNA_POL_M_15KD  RNA polymerases M/15 Kd subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.2   1.4   1.1e-09   2.5e-06       4      28 ..      71      97 ..      69     104 .. 0.90
   2 ?   -3.0   1.1       3.2   7.3e+03      24      28 ..     139     143 ..     133     146 .. 0.80
   3 ?    4.2   0.0     0.018        41      14      29 ..     154     171 ..     152     172 .. 0.80

  Alignments for each domain:
  == domain 1  score: 27.2 bits;  conditional E-value: 1.1e-09
                    ESTTTSBEEEEECSCCCE..EEESSSS CS
  RNA_POL_M_15KD  4 CpkCgNlLlpkedkegkn..feCrqCg 28
                    Cp+CgN+L+pke   +k     Cr+C+
      KOO20969.1 71 CPECGNMLYPKENAATKTlqRVCRNCQ 97
                    ************9999887777****8 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 3.2
                     ESSSS CS
  RNA_POL_M_15KD  24 CrqCg 28 
                     C +C+
      KOO20969.1 139 CTNCQ 143
                     88887 PP

  == domain 3  score: 4.2 bits;  conditional E-value: 0.018
                     EECSCCCE..EEESSSS- CS
  RNA_POL_M_15KD  14 kedkegkn..feCrqCgY 29 
                     ++++eg    f C +C Y
      KOO20969.1 154 TRGDEGMKliFMCTKCAY 171
                     6777777679******99 PP

>> GFA  Glutathione-dependent formaldehyde-activating enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.9   0.0   4.9e-05      0.11      26      67 ..      44      86 ..      28      92 .. 0.75
   2 ?    4.6   0.1     0.018        40       5      22 ..      93     110 ..      90     128 .. 0.80
   3 !    8.2   1.5    0.0014       3.1       2      19 ..     136     153 ..     135     165 .. 0.82

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 4.9e-05
         GFA 26 alelleg.elkeykktadsgnkvtrsfCpeCgsplyseesaap 67
                 le+++  +   +++++d g++   + CpeCg  ly +e+aa 
  KOO20969.1 44 VLEYTSTgRRPRIQYNSDPGRQTPFWLCPECGNMLYPKENAAT 86
                55555444444577789*******************8766554 PP

  == domain 2  score: 4.6 bits;  conditional E-value: 0.018
         GFA   5 CsdCrkasgsaftanavv 22 
                 C++C+++ ++  ++++v 
  KOO20969.1  93 CRNCQHTDAAERNLVFVN 110
                 *******99887777665 PP

  == domain 3  score: 8.2 bits;  conditional E-value: 0.0014
         GFA   2 lChCsdCrkasgsaftan 19 
                 +C C++C+++++  f+a+
  KOO20969.1 136 QCLCTNCQHTEAVFFQAV 153
                 8*********98776654 PP

>> DZR  Double zinc ribbon
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.4   0.7   1.3e-05      0.03      14      38 ..      70     100 ..      61     106 .. 0.83
   2 ?   -1.2   5.1      0.93   2.1e+03      14      34 ..     138     169 ..     119     175 .] 0.59

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 1.3e-05
         DZR  14 fCseCgtklkavaa......edrCpsCgekv 38 
                  C+eCg+ l + ++      +++C +C++  
  KOO20969.1  70 LCPECGNMLYPKENaatktlQRVCRNCQHTD 100
                 6*******97666689***********9875 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 0.93
         DZR  14 fCseCgtk....lkavaa.......edrCpsC 34 
                  C +C+++     +av++         +C +C
  KOO20969.1 138 LCTNCQHTeavfFQAVTRgdegmklIFMCTKC 169
                 56666555333322222255555554556666 PP

>> TF_Zn_Ribbon  TFIIB zinc-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.0   0.0    0.0037       8.2      21      29 ..      70      78 ..      65      87 .. 0.79
   2 ?    3.6   0.0     0.021        46       2      10 ..      92     100 ..      91     109 .. 0.79
   3 ?    0.1   2.2      0.26   5.8e+02       3      11 ..     139     148 ..     137     171 .. 0.59

  Alignments for each domain:
  == domain 1  score: 6.0 bits;  conditional E-value: 0.0037
                  EESSSSBEE CS
  TF_Zn_Ribbon 21 vCtdCGlVl 29
                  +C++CG++l
    KOO20969.1 70 LCPECGNML 78
                  577777765 PP

  == domain 2  score: 3.6 bits;  conditional E-value: 0.021
                   EETTTTCEE CS
  TF_Zn_Ribbon   2 kCPnCgstn 10 
                   +C nC +t+
    KOO20969.1  92 VCRNCQHTD 100
                   8*****997 PP

  == domain 3  score: 0.1 bits;  conditional E-value: 0.26
                   ETTTTCEE.C CS
  TF_Zn_Ribbon   3 CPnCgstn.l 11 
                   C nC +t+ +
    KOO20969.1 139 CTNCQHTEaV 148
                   7788877744 PP

>> Zn_Tnp_IS1595  Transposase zinc-ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.2   2.9    0.0021       4.8      21      46 .]      71      99 ..      64      99 .. 0.78
   2 ?    2.6   0.6      0.06   1.3e+02      19      27 ..      91      99 ..      85     103 .. 0.77
   3 ?    6.9   2.2    0.0027       6.1      19      45 ..     136     171 ..     131     172 .. 0.87

  Alignments for each domain:
  == domain 1  score: 7.2 bits;  conditional E-value: 0.0021
  Zn_Tnp_IS1595 21 CPhCgsr...kayriktrglfqCkeCrkq 46
                   CP Cg++   k    ++  +  C+ C+++
     KOO20969.1 71 CPECGNMlypKENAATKTLQRVCRNCQHT 99
                   *******998555555559999****985 PP

  == domain 2  score: 2.6 bits;  conditional E-value: 0.06
  Zn_Tnp_IS1595 19 fvCPhCgsr 27
                   +vC +C+++
     KOO20969.1 91 RVCRNCQHT 99
                   789999986 PP

  == domain 3  score: 6.9 bits;  conditional E-value: 0.0027
  Zn_Tnp_IS1595  19 fv.CPhCgsrkayrikt........rglfqCkeCrk 45 
                    ++ C +C++++a ++++           f+C +C +
     KOO20969.1 136 QClCTNCQHTEAVFFQAvtrgdegmKLIFMCTKCAY 171
                    556*************999999998889******87 PP

>> PhnA_Zn_Ribbon  PhnA Zinc-Ribbon
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.1   0.0    0.0011       2.5      18      27 ..      67      76 ..      57      76 .. 0.86
   2 ?   -0.3   0.2      0.49   1.1e+03      21      27 ..      92      98 ..      91      98 .. 0.84
   3 ?   -0.5   0.9      0.56   1.3e+03      20      27 ..     137     144 ..     128     144 .. 0.72
   4 ?    3.6   0.1     0.029        65      19      29 ..     163     173 ..     160     174 .. 0.86

  Alignments for each domain:
  == domain 1  score: 8.1 bits;  conditional E-value: 0.0011
  PhnA_Zn_Ribbon 18 allvCpeCah 27
                      ++CpeC++
      KOO20969.1 67 PFWLCPECGN 76
                    579*****85 PP

  == domain 2  score: -0.3 bits;  conditional E-value: 0.49
  PhnA_Zn_Ribbon 21 vCpeCah 27
                    vC +C h
      KOO20969.1 92 VCRNCQH 98
                    7999987 PP

  == domain 3  score: -0.5 bits;  conditional E-value: 0.56
  PhnA_Zn_Ribbon  20 lvCpeCah 27 
                      +C +C h
      KOO20969.1 137 CLCTNCQH 144
                     57999987 PP

  == domain 4  score: 3.6 bits;  conditional E-value: 0.029
  PhnA_Zn_Ribbon  19 llvCpeCahEw 29 
                     ++ C +Ca+ w
      KOO20969.1 163 IFMCTKCAYRW 173
                     799*****988 PP

>> Nudix_N_2  Nudix N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.3   1.9     0.002       4.5       3      31 ..      71      99 ..      70     100 .. 0.81
   2 ?    2.0   0.3     0.088     2e+02      24      31 ..     138     145 ..     120     148 .. 0.84
   3 ?    0.7   0.0      0.22   4.9e+02      24      29 ..     165     170 ..     150     172 .. 0.79

  Alignments for each domain:
  == domain 1  score: 7.3 bits;  conditional E-value: 0.002
                -TTT--B-EEE--TT-SS-EEEETTTTEE CS
   Nudix_N_2  3 CsqCGtpvelripdgDnreRlvCpaCgti 31
                C++CG+ +  +  +  +    vC +C+++
  KOO20969.1 71 CPECGNMLYPKENAATKTLQRVCRNCQHT 99
                *******998777666666669****986 PP

  == domain 2  score: 2.0 bits;  conditional E-value: 0.088
                 EETTTTEE CS
   Nudix_N_2  24 vCpaCgti 31 
                  C++C+++
  KOO20969.1 138 LCTNCQHT 145
                 59999986 PP

  == domain 3  score: 0.7 bits;  conditional E-value: 0.22
                 EETTTT CS
   Nudix_N_2  24 vCpaCg 29 
                 +C++C 
  KOO20969.1 165 MCTKCA 170
                 688885 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (175 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       700  (0.0390429); expected 358.6 (0.02)
Passed bias filter:                      384  (0.0214178); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                        14  (0.000780858); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.44u 0.25s 00:00:00.69 Elapsed: 00:00:00.43
# Mc/sec: 1209.13
//
Query:       KOO20970.1  [L=461]
Description: hypothetical protein Ctob_000039 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    5.2e-11   42.6   0.0    6.3e-10   39.0   0.0    2.7  1  Glyco_transf_8  Glycosyl transferase family 8


Domain annotation for each model (and alignments):
>> Glyco_transf_8  Glycosyl transferase family 8
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.0   0.0   3.5e-14   6.3e-10      86     251 ..     137     373 ..      19     376 .. 0.79

  Alignments for each domain:
  == domain 1  score: 39.0 bits;  conditional E-value: 3.5e-14
  Glyco_transf_8  86 lsllnylRlylpel..fpkldkilylDaDvvvqgdlseLwdldlk.gkvlaaved........................................ 137
                       + n++R+ylp l  f +ld +   D+D+vvq+++s L +++++ g ++aa                                           
      KOO20970.1 137 HDPFNLIRFYLPYLgpFRELDSLFLCDDDIVVQKSISTL-EVPMGdGPIIAATCNgwlwaedcmrnepyyngkgwldypatylgkdkahgysgct 230
                     45679********95559*******************97.8999978888888889*************************************** PP

  Glyco_transf_8 138 ..............krfkkylnksepliaenfkpe.acyFnaGvllfdldewrkenitetlikwlnlnekrtllklgdqdilniv.fkgkvkeld 216
                                   +  ++ +  s++++ ++++p+ +  +n+G+  ++l+ewrk+n+t +  ++++ n + +l+   ++ +++ + f     +++
      KOO20970.1 231 kkasesgnricqkdEFAETVMRWSKKFNGKELIPAdQPRWNFGLSRVNLTEWRKQNMTHVFDSYMRANYEAKLIPETSLAFGLGIpFFAFADKIK 325
                     *******99888866666677778888888888762568*****************************999********9998653555555555 PP

  Glyco_transf_8 217 kkynvlglgy.............eqskkskkeitenaaviHyiGpaKP 251
                     +  +v+g+               + ++ +  e+  +a+v+H++G+ KP
      KOO20970.1 326 CWNDVVGDPAfvdglgyiskadlSLNNLNASEVLGQANVLHWSGRNKP 373
                     4444544444555666688999988899999999*************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (461 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       316  (0.0176251); expected 358.6 (0.02)
Passed bias filter:                      300  (0.0167327); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.53u 0.23s 00:00:00.76 Elapsed: 00:00:00.42
# Mc/sec: 3272.10
//
Query:       KOO20971.1  [L=176]
Description: hypothetical protein Ctob_000038 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
     0.0015   18.5   0.1      0.074   13.2   0.0    2.3  2  Rubi_NSP_C       Rubivirus non-structural protein
     0.0022   17.8   0.0     0.0075   16.1   0.0    1.9  2  Methyltransf_23  Methyltransferase domain


Domain annotation for each model (and alignments):
>> Rubi_NSP_C  Rubivirus non-structural protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.2   0.0   8.3e-06     0.074      29      60 ..      52      83 ..      48      87 .. 0.94
   2 ?    3.0   0.0     0.012   1.1e+02      51      65 ..     139     153 ..     134     154 .. 0.89

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 8.3e-06
  Rubi_NSP_C 29 tcaatdeGlaqayyddlevrrlGddamaraal 60
                tc  ++e l+qa ++  +v+++Gd  ma a l
  KOO20971.1 52 TCMGAQEILTQAGFEITDVKKVGDSHMASAYL 83
                9***************************9977 PP

  == domain 2  score: 3.0 bits;  conditional E-value: 0.012
  Rubi_NSP_C  51 Gddamaraalasvqr 65 
                  dd + raa a vq+
  KOO20971.1 139 QDDNILRAATANVQQ 153
                 69***********96 PP

>> Methyltransf_23  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.0   8.4e-07    0.0075      89     120 ..       3      34 ..       1      70 [. 0.87
   2 ?   -2.7   0.0      0.52   4.6e+03      16      30 ..     104     120 ..      75     121 .. 0.60

  Alignments for each domain:
  == domain 1  score: 16.1 bits;  conditional E-value: 8.4e-07
  Methyltransf_23  89 revlehvpdppellrqiatllkpgGylllsep 120
                      r+v+ehv+dp ++ r +++l++pgG ++ s p
       KOO20971.1   3 RNVFEHVKDPFAAARGLFQLVRPGGFVFWSAP 34 
                      789************************98876 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 0.52
  Methyltransf_23  16 llpk..lraggrvLdiG 30 
                      +++k  + +++ +L+i 
       KOO20971.1 104 FSAKqdDHSDKQWLSIS 120
                      22222244555555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (176 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       328  (0.0182944); expected 358.6 (0.02)
Passed bias filter:                      315  (0.0175693); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.41u 0.23s 00:00:00.64 Elapsed: 00:00:00.40
# Mc/sec: 1309.97
//
Query:       KOO20972.1  [L=344]
Description: iduronate 2-sulfatase-like protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.5e-23   82.9   0.0    3.4e-23   82.5   0.0    1.1  1  Sulfatase  Sulfatase


Domain annotation for each model (and alignments):
>> Sulfatase  Sulfatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   82.5   0.0   1.9e-27   3.4e-23       1     236 [.       7     327 ..       7     333 .. 0.84

  Alignments for each domain:
  == domain 1  score: 82.5 bits;  conditional E-value: 1.9e-27
                 EEEEEEEESSE-TT.....GSGGGTTTSCSSHHHHHHHHTSEEESSEE-SSSSHHHHHHHHHHSS-HHHHTHSSCCSTTTHHCTTTS-HHHHHHHHTT- CS
   Sulfatase   1 pnvvliladdlgag.....dlglyggktattpnldrlaeeglrftnfysaaplcspsraalltgryphnsgvasntevgggglpqteatLpellkeaGY 94 
                 pnv++i  ddl+ +       ++  +k+ +tpnld+ ++  +++tn ++ +++cspsr ++l gr p++++v++  + + +    ++ t+p ++ +aGY
  KOO20972.1   7 PNVLFIPNDDLRPMinrwpEPQTLKYKYMMTPNLDKFMDDAILLTNSHVQQAVCSPSRTSVLYGRRPDTTHVYNLYDNTREVGCADCITIPGIFTAAGY 105
                 8**********88788888******************************************************999999999***************** PP

                 EEEEEEES-SCCSGGGSHHC...........CTTTSE.EEETSSSCHHTCCCCCCCCCECTCCC................................... CS
   Sulfatase  95 ntaaigkwhlgwssrqsvyk...........nrgfdr.flgfptgsaalkdpekseyngevlrv................................... 146
                  t  +g    +++   s y+             g d  flg +     ++             +                                   
  KOO20972.1 106 IT--VGMGKIFHDGHASYYDdpnswtdfngtTTGKDGwFLG-QDDGPGQC-------------Qpkadfwpwhegdiselqaseqgsglswrsvnesvv 188
                 **..7777777777777655666666666663333331333.33333333.............2333344446666799999***************** PP

                 ........TTTTCSHHHHHHHHHHHHH.HCCCTSSEEEEEEE-TTSSSTCTCGGHTCCGSTTTTCCCCCCH............................ CS
   Sulfatase 147 ........ppeggysddrlldealefl.larndkpfflylatlapHappeapdeyakkyatffddgseaar............................ 208
                         ++ g ++++rl+      l   ++ +pffl + +  pH p+ ap  + + y + + ++  ++                             
  KOO20972.1 189 glcqdsqvREHGLMWMRRLAAAQRSALvNGETPQPFFLAVGLRKPHLPFVAPSSFFDLYPAADTQLAPNPYapwdmpavayaseelqsysdvaalgftg 287
                 *********************99999955555***********************99998887766665337888888889999999999********* PP

                 ............HHHHHHHHHHHHHHHHHHHHHHHHHHTT CS
   Sulfatase 209 ............qlleaylnsveyvDdligrvlaaLeeng 236
                             +l++ay ++++ +D + g +l++L+ + 
  KOO20972.1 288 ainetlpdwkalELVRAYQAALSFTDSNMGALLNELKVLC 327
                 ************************************7655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (344 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       261  (0.0145574); expected 358.6 (0.02)
Passed bias filter:                      249  (0.0138881); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.23s 00:00:00.67 Elapsed: 00:00:00.38
# Mc/sec: 2680.39
//
Query:       KOO20973.1  [L=115]
Description: iduronate 2-sulfatase-like protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
  ------ inclusion threshold ------
      0.018   15.3   0.1      0.076   13.3   0.0    1.8  2  DUF4976      Domain of unknown function (DUF4976)
      0.046   14.4   0.0      0.061   14.1   0.0    1.2  1  Sulfatase_C  C-terminal region of aryl-sulfatase


Domain annotation for each model (and alignments):
>> DUF4976  Domain of unknown function (DUF4976)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.2   0.0      0.13   1.2e+03      12      30 ..       2      19 ..       1      33 [. 0.81
   2 ?   13.3   0.0   8.5e-06     0.076      61      95 ..      63      97 ..      48     104 .. 0.79

  Alignments for each domain:
  == domain 1  score: -0.2 bits;  conditional E-value: 0.13
     DUF4976 12 pllkgkkkkewrkalyYhy 30
                pl+k + +++w++a y +y
  KOO20973.1  2 PLIK-NPTRAWKNASYSQY 19
                6777.78889999999887 PP

  == domain 2  score: 13.3 bits;  conditional E-value: 8.5e-06
     DUF4976 61 ewelyDlkkDpkelknlyddpeyeevvkelkkkle 95
                 +ely+l +Dp e +nl  ++ +++ vk+  ++l+
  KOO20973.1 63 GFELYNLTADPLENRNLAYHDGMQQKVKMHFEQLK 97
                48**************9887777776666556665 PP

>> Sulfatase_C  C-terminal region of aryl-sulfatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   0.0   6.8e-06     0.061      56      99 ..      66     109 ..      47     114 .. 0.83

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 6.8e-06
                  EEETTT-TT--S-TTSTTCCHHHHHHHHHHHHHHHCCC------ CS
  Sulfatase_C  56 lFdlerDpsEkyplsaespeykevlkeikkaveehkktlkpvpn 99 
                  l++l++Dp E+++l+ ++   ++v  + +++++ +++t ++ p+
   KOO20973.1  66 LYNLTADPLENRNLAYHDGMQQKVKMHFEQLKAGWRATASALPS 109
                  9**************99977778888888888888887776665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (115 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       332  (0.0185175); expected 358.6 (0.02)
Passed bias filter:                      273  (0.0152267); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.37u 0.26s 00:00:00.63 Elapsed: 00:00:00.41
# Mc/sec: 841.84
//
Query:       KOO20974.1  [L=108]
Description: hypothetical protein Ctob_000031 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (108 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       354  (0.0197445); expected 358.6 (0.02)
Passed bias filter:                      268  (0.0149478); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.25s 00:00:00.59 Elapsed: 00:00:00.39
# Mc/sec: 825.74
//
Query:       KOO20975.1  [L=257]
Description: hypothetical protein Ctob_000030 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (257 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       401  (0.022366); expected 358.6 (0.02)
Passed bias filter:                      327  (0.0182386); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.44u 0.25s 00:00:00.69 Elapsed: 00:00:00.42
# Mc/sec: 1830.36
//
Query:       KOO20976.1  [L=109]
Description: hypothetical protein Ctob_000037 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
        0.1   12.6   0.2       0.36   10.8   0.2    1.8  2  Cbl_N     CBL proto-oncogene N-terminal domain 1


Domain annotation for each model (and alignments):
>> Cbl_N  CBL proto-oncogene N-terminal domain 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.7   0.0     0.027   4.8e+02      32      66 ..       3      37 ..       1      43 [. 0.85
   2 ?   10.8   0.2     2e-05      0.36      66     103 ..      65     105 ..      16     107 .. 0.81

  Alignments for each domain:
  == domain 1  score: 0.7 bits;  conditional E-value: 0.027
                S-HHHHHHHHHHHHHHHHHHS..-HHHHTT-HHHH CS
       Cbl_N 32 PylldllpdtaqlLrevaekrrekeealseaeylr 66
                P l+d++   a  L++ +++ r+   +l++ +ylr
  KOO20976.1  3 PPLPDTIRAPAIVLQHSMKAIRTGPPELNKYDYLR 37
                56889999999999999999999888999999986 PP

  == domain 2  score: 10.8 bits;  conditional E-value: 2e-05
                 HHHHHHHHHHHHHHHHHH...HTTHHHHT-TTSHHHHHHHH CS
       Cbl_N  66 riflanllkkskqvakLf...keakeklfeeeselRrqLtk 103
                  i+++n +++sk vakL+   ++a+e+  e  ++ R  Ltk
  KOO20976.1  65 DITIENWEQRSKAVAKLMienEKAEEEAKERVASFRAALTK 105
                 699***************99878899999999999*99998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (109 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       724  (0.0403815); expected 358.6 (0.02)
Passed bias filter:                      461  (0.0257125); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.24s 00:00:00.62 Elapsed: 00:00:00.39
# Mc/sec: 848.22
//
Query:       KOO20977.1  [L=387]
Description: hypothetical protein Ctob_000036, partial [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.4e-48  163.8   0.0    8.4e-48  163.4   0.0    1.1  1  CLPTM1    Cleft lip and palate transmembrane protein 1 (CLPTM


Domain annotation for each model (and alignments):
>> CLPTM1  Cleft lip and palate transmembrane protein 1 (CLPTM1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  163.4   0.0   4.7e-52   8.4e-48       4     374 ..       5     380 ..       2     386 .. 0.81

  Alignments for each domain:
  == domain 1  score: 163.4 bits;  conditional E-value: 4.7e-52
      CLPTM1   4 llrvlllyllvslvtlsgkansppceeepseestpkclapllkegekldlsvyvseseefeklkseeklvlkeknlkygdweesreveltiklpkevqn 102
                 +  v++l++++s+  ++ ++ +p+c+    +   + c++p l+ g ++d++ ++ e   ++      + v++ +n+  +++ee  e+ +t ++p +v++
  KOO20977.1   5 VGAVMVLWIAMSAKEFYVLFYPPACKL---R---HGCYHPRLPWGARVDITAHMGE-GAIR------AAVWNVTNV--SSVEE-LEAAITTPVPPSVRR 87 
                 678999********************2...2...45******************74.3333......459999999..33444.677999*******77 PP

      CLPTM1 103 Ng..tlyahvfltksgssldpkdekydkksvvhktkqLtkylpkkkekktknLlkekeeeeeee........ekeekpv............ivsywkpn 179
                      l++++ l+++gs+   ++ +++  ++++ ++     +  ++        +++e+   +e        +     +               y    
  KOO20977.1  88 GEmrELWLTFELSRTGSDDVLSAARVNIVQMYEARERSQASMLLERDVFGDVFASSDEKPAVTEapstsstvS-----AelapadrhgrvpHFIYSYRM 181
                 65569**********9999777666666666666654444444423333333333333322222444444441.....044444555543434444578 PP

      CLPTM1 180 ltlslvsdktalskeqlppevaeyik.leetggqYlPilfvnefwqlkkdlveinetvke..lpLtitlsplslwklqlyasmeeslkqqaklgfseke 275
                  +l+lv+d  a+    l p+   + + ++   ++Y P ++v++f+ l+k++ ++ + v++    L+++++p+s+++ +++a++ + ++++ ++ + ++e
  KOO20977.1 182 CELRLVTDARAYASPFLAPDGTPIGQsWDVHARTYAPHFYVDTFSLLRKHALPLSADVQKahPRLKLKFKPISVGRHRIMAQLGSLFESLGASLGLGTE 280
                 89****************9988887756666688************************762257*********************************** PP

      CLPTM1 276 ideiKeilldtnpyLLalTivVsllHsvfefLAFknDisfWrkkksleGlSvrsilanvfsqlvifLYLlDn.eTSwlilisqgiGllielWKitkvvk 373
                 +dei+e+l +  +y  ++  ++s+lH++f++LAF +Di fW+ k+++ GlS r+++ ++ ++++i LYLlD  + + ++l++  + +++elWK+ +v++
  KOO20977.1 281 LDEIRELLSEERLYRFVVMQIISILHVIFDVLAFRSDIGFWKGKETMSGLSSRAVISSAAQTVIIYLYLLDAdNLNSIVLATYTFSTAVELWKVVRVLQ 379
                 ************************************************************************9************************98 PP

      CLPTM1 374 v 374
                 +
  KOO20977.1 380 I 380
                 7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (387 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       379  (0.0211389); expected 358.6 (0.02)
Passed bias filter:                      304  (0.0169558); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.25s 00:00:00.74 Elapsed: 00:00:00.42
# Mc/sec: 2748.88
//
Query:       KOO20978.1  [L=104]
Description: hypothetical protein Ctob_000035, partial [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (104 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       405  (0.0225891); expected 358.6 (0.02)
Passed bias filter:                      242  (0.0134977); expected 358.6 (0.02)
Passed Vit filter:                        12  (0.000669307); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.24s 00:00:00.62 Elapsed: 00:00:00.42
# Mc/sec: 745.21
//
Query:       KOO20979.1  [L=443]
Description: gtp-binding protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    2.7e-28   98.5   0.1    6.1e-28   97.3   0.1    1.6  1  GTP-bdg_N    GTP-binding GTPase N-terminal
    5.3e-22   78.2   1.4    8.6e-22   77.5   1.4    1.3  1  GTP-bdg_M    GTP-binding GTPase Middle Region
    2.4e-20   72.7   0.1    6.1e-20   71.4   0.1    1.7  1  MMR_HSR1     50S ribosome-binding GTPase
    0.00012   22.2   0.1      0.012   15.7   0.0    2.3  2  Dynamin_N    Dynamin family
    0.00032   20.3   4.3       0.14   11.7   0.2    2.7  3  cobW         CobW/HypB/UreG, nucleotide-binding domain
    0.00041   19.9   0.1        0.3   10.6   0.0    2.3  2  GTP_EFTU     Elongation factor Tu GTP binding domain
    0.00046   19.8   0.4     0.0017   17.9   0.4    1.9  1  FeoB_N       Ferrous iron transport protein B
    0.00052   20.5   0.0     0.0013   19.2   0.0    1.7  1  ABC_tran     ABC transporter
    0.00079   19.4   0.0      0.035   14.0   0.0    2.4  2  RsgA_GTPase  RsgA GTPase
     0.0093   16.4   0.6       0.02   15.3   0.6    1.5  1  AAA_16       AAA ATPase domain
  ------ inclusion threshold ------
      0.013   15.0   0.1        3.6    7.0   0.0    2.4  2  Arf          ADP-ribosylation factor family
      0.027   15.0   0.1      0.073   13.6   0.0    1.6  2  AAA_23       AAA domain


Domain annotation for each model (and alignments):
>> GTP-bdg_N  GTP-binding GTPase N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   97.3   0.1   4.1e-31   6.1e-28       2      88 ..      84     176 ..      83     177 .. 0.97

  Alignments for each domain:
  == domain 1  score: 97.3 bits;  conditional E-value: 4.1e-31
   GTP-bdg_N   2 esleEleeLaktaglevvgevvqkrekpdpatyiGkGkveeikelveeeeadlvifddeLspsqqrnLekel......evkViDRtqLILdIF 88 
                 +sl+El++L++taglev+g+ +q +++p+p+t+iG+Gk++ei++lv++ ++++vifd+eL+p+q rn+++ l      +v+V+DRt+LIL IF
  KOO20979.1  84 DSLDELQRLCETAGLEVLGRDYQTLQHPSPSTFIGQGKLDEIAALVKSMRVSTVIFDEELTPAQGRNIQNVLieacgeQVQVLDRTMLILVIF 176
                 79********************************************************************888888989************** PP

>> GTP-bdg_M  GTP-binding GTPase Middle Region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   77.5   1.4   5.7e-25   8.6e-22       1      79 []     179     263 ..     179     263 .. 0.92

  Alignments for each domain:
  == domain 1  score: 77.5 bits;  conditional E-value: 5.7e-25
                 H--SHHHHHHHHHHHHHHHHHHHC...XXXXXXXXX..X.....XXXXXXXXXHHHHHHHHHHHHHHHHHHHHHHHHHH.....T CS
   GTP-bdg_M   1 rArtkeaklQVelAqlkyllprLe...glgkelsrqgGgig...trGpGetkleldrrlireriaklkkeLekvkkkrelqrkkR 79 
                 rArt eaklQV+ Aq+ky+lprL+   ++g+ ++  gG++g   ++G+Get+le drrl+r++  k++ +L++v+ +r+ +r+kR
  KOO20979.1 179 RARTSEAKLQVAAAQMKYMLPRLKfflTQGAGMDAKGGSGGgmfLKGSGETQLEEDRRLFRKQLGKIEDDLAAVQAQRDMLRAKR 263
                 9**********************98888888888887754468899*************************************98 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   71.4   0.1   4.1e-23   6.1e-20       2     114 .]     272     391 ..     271     391 .. 0.77

  Alignments for each domain:
  == domain 1  score: 71.4 bits;  conditional E-value: 4.1e-23
                 EEEEESTTSSHHHHHHHHHTS.TEEESSSTTSSSSEEEEEEE.ETTEEEEEEECGGCSSHHHHHHHHHHHHHH....HHCTSEEEEEEETTTT.CSHHH CS
    MMR_HSR1   2 vaivGrpNvGKStLinaltge.kaivsdkpgtTrdinegrvk.lkgkeielvDtpGliegaseekglgkafla....leeadlillvvdasee.klkpl 93 
                 vaivG++N+GKStL+n+l+g+ ++ + d  ++T+d++ +  +  +gke+ l+Dt+G+i+  +   +l  af+a    l +a l+++vvdas+e  +++ 
  KOO20979.1 272 VAIVGYTNAGKSTLLNTLCGSsEVYADDLLFATLDPTSRLHAlPGGKEVLLTDTVGFIQ--KLPTKLVAAFRAtldeLVDATLLVHVVDASSEiAVQQ- 367
                 8*******************9889************9997774555**********988..445567777776322255699*******995522333. PP

                 HHHHHHHHHH...TTSEEEEEEES CS
    MMR_HSR1  94 deeleellee...akkplilvlnk 114
                  ++++ + +e   ++kp ilvlnk
  KOO20979.1 368 VRSVQGIVKEleaSGKPQILVLNK 391
                 344444444455599********8 PP

>> Dynamin_N  Dynamin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.0   8.1e-06     0.012       1      21 [.     272     292 ..     272     299 .. 0.93
   2 ?    4.3   0.0     0.026        38     102     167 ..     319     391 ..     311     392 .. 0.70

  Alignments for each domain:
  == domain 1  score: 15.7 bits;  conditional E-value: 8.1e-06
                 EEEEEBTTTTHHHHHHHHHTS CS
   Dynamin_N   1 iavvGsqSsGKSSvlnaLlge 21 
                 +a+vG +++GKS++ln L+g+
  KOO20979.1 272 VAIVGYTNAGKSTLLNTLCGS 292
                 79*****************97 PP

  == domain 2  score: 4.3 bits;  conditional E-value: 0.026
                 SEEEEE---B-SSSGTTS....HHHHHHHSTTEEEEEEEETTS-CCC-CHHH...HHHHHSTTBTTEEEEEE- CS
   Dynamin_N 102 gltlvDlPGldsvnkrdq....elvkeyikkadiilavtsanhdlsnsealf...larevdpkgkrtivvltk 167
                 ++ l D+ G+++    +     + +   + +a+++++v++a+++++ ++++    + +e++  gk  i vl+k
  KOO20979.1 319 EVLLTDTVGFIQKLPTKLvaafRATLDELVDATLLVHVVDASSEIAVQQVRSvqgIVKELEASGKPQILVLNK 391
                 66778888887755544456666666667788889999*****999886665111566666777779999998 PP

>> cobW  CobW/HypB/UreG, nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.0       2.4   3.6e+03      81      92 ..     149     160 ..     117     192 .. 0.67
   2 !    9.7   0.2    0.0004       0.6       1      23 [.     270     292 ..     270     304 .. 0.87
   3 !   11.7   0.2   9.7e-05      0.14      76     161 ..     311     403 ..     297     414 .. 0.73

  Alignments for each domain:
  == domain 1  score: -2.6 bits;  conditional E-value: 2.4
                 TT-SEEEEEECT CS
        cobW  81 erldviliEttG 92 
                 ++++ +liE+ G
  KOO20979.1 149 RNIQNVLIEACG 160
                 567777777777 PP

  == domain 2  score: 9.7 bits;  conditional E-value: 0.0004
                 EEEEEEESTTCCHHHHHHHHHCT CS
        cobW   1 pvtvltGflGsGKTtLlnhllen 23 
                 pv+ ++G+  +GK+tLln+l+  
  KOO20979.1 270 PVVAIVGYTNAGKSTLLNTLCGS 292
                 7899****************943 PP

  == domain 3  score: 11.7 bits;  conditional E-value: 9.7e-05
                 HHHHHTT-SEEEEEECT..TTTHHHH.HTTSHHHHHCCCECEEEEEEETTTH..CCHCCHHHHHHHHHHTS...SEEEEE-HHHHCHC...HHH CS
        cobW  76 leereerldviliEttG..laePapv.afteeelksdltldavvavvDaknl.eaeeekieekaedqlaaa...dllvlnKtDlldee.allek 161
                 l ++++  +v+l  t+G     P+ + a    +l + + ++ +v vvDa+     ++ ++ + + ++l+a+    +lvlnK+D + ++ +l ++
  KOO20979.1 311 LHALPGGKEVLLTDTVGfiQKLPTKLvAAFRATLDELVDATLLVHVVDASSEiAVQQVRSVQGIVKELEASgkpQILVLNKADAVGADpTL-AA 403
                 45555667899999***53345777755559999999************765555666666777777777644479*********999544.33 PP

>> GTP_EFTU  Elongation factor Tu GTP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.0   0.0    0.0025       3.8       5      26 ..     271     292 ..     267     301 .. 0.84
   2 !   10.6   0.0    0.0002       0.3      96     148 ..     352     408 ..     341     430 .. 0.74

  Alignments for each domain:
  == domain 1  score: 7.0 bits;  conditional E-value: 0.0025
                 EEEEEESTTSSHHHHHHHHHHH CS
    GTP_EFTU   5 nigiighvDhGKtTLtdrLlyk 26 
                  ++i+g +++GK+TL+ +L  +
  KOO20979.1 271 VVAIVGYTNAGKSTLLNTLCGS 292
                 589*************999755 PP

  == domain 2  score: 10.6 bits;  conditional E-value: 0.0002
                 EEEEEEETTTBSTHHHHH.H...HHHHHHTTTEEEEEEESCGSTHHHHHHHHHHHHH CS
    GTP_EFTU  96 gavlvvdaveGvepqtee.v...lrlalkegvpiivfiNKmDrlkaelkeiveevkq 148
                 + v vvda++ + +q  + v   ++ + + g p i+++NK+D ++a+    ++++++
  KOO20979.1 352 LLVHVVDASSEIAVQQVRsVqgiVKELEASGKPQILVLNKADAVGADPTLAARAAST 408
                 567799*99997766544141114555566777***********9998887776665 PP

>> FeoB_N  Ferrous iron transport protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.9   0.4   1.1e-06    0.0017       3     118 ..     272     395 ..     270     400 .. 0.64

  Alignments for each domain:
  == domain 1  score: 17.9 bits;  conditional E-value: 1.1e-06
                 EEEEESTTSSHHHHHHHHHTTSEEEE.ESTTSSSEEEEEEEEETT.EEEEEEE----SSS..SSSSHHHHHHHHHHHCTSSSEEEEEEEGG.....GHH CS
      FeoB_N   3 valvGnpnvGkttlfnaltgakqkvg.NwpGvtvekkegklklkg.keveivDlPGiYsl..sayseeekvardflleeepdvvvnvvdat.....nle 92 
                 va+vG  n+Gk+tl+n+l+g+++  +      t + ++    l g kev ++D  G  +   ++     + + d l+  ++ ++v+vvda+     +  
  KOO20979.1 272 VAIVGYTNAGKSTLLNTLCGSSEVYAdDLLFATLDPTSRLHALPGgKEVLLTDTVGFIQKlpTKLVAAFRATLDELV--DATLLVHVVDASseiavQQV 368
                 89******************986554156777888777777765558899999988754313333333344444444..44567788887522211233 PP

                 HHHH.HHHHHHHTTSSEEEEEETHHHH CS
      FeoB_N  93 rnLy.Ltlqllelgvpvvlalnmidea 118
                 r+++ ++ +l   g+p +l+ln+ d++
  KOO20979.1 369 RSVQgIVKELEASGKPQILVLNKADAV 395
                 555414444445568888888888876 PP

>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.2   0.0   8.8e-07    0.0013      13      46 ..     271     304 ..     266     389 .. 0.82

  Alignments for each domain:
  == domain 1  score: 19.2 bits;  conditional E-value: 8.8e-07
                 EEEEEESTTSSHHHHHHHHTTSS--SEEEEEETT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  13 kvaivGenGaGKStLlkllagllkpteGeilldg 46 
                 +vaivG + aGKStLl++l+g ++  ++++l+  
  KOO20979.1 271 VVAIVGYTNAGKSTLLNTLCGSSEVYADDLLFAT 304
                 79********************999888876654 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.0   0.0   2.4e-05     0.035      69     124 ..     239     294 ..     227     329 .. 0.76
   2 ?    2.8   0.0     0.066        98      32      63 ..     368     399 ..     347     420 .. 0.72

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 2.4e-05
                  HHHHHHTTSEEEE--TTTHTTHHHHHHHCTTSEEEEECSTTSSHHHHHHHHCTT-- CS
  RsgA_GTPase  69 keelealgyevllvsaktkegleelkellkdktsvlvGqSGvGKStLinallpele 124
                  +++l +++ ++ +v+a++    ++ +e  +  ++++vG + +GKStL+n+l ++ e
   KOO20979.1 239 RKQLGKIEDDLAAVQAQRDMLRAKRREGDRRPVVAIVGYTNAGKSTLLNTLCGSSE 294
                  56666666666666666444444444444557999****************99865 PP

  == domain 2  score: 2.8 bits;  conditional E-value: 0.066
                  HHHHHHHHHHHHHTT-EEEEEEE-GGG--HHH CS
  RsgA_GTPase  32 lnlldrfLvlaeekgiepvivlnKiDlleeee 63 
                  ++ ++ ++ ++e++g + ++vlnK+D +  + 
   KOO20979.1 368 VRSVQGIVKELEASGKPQILVLNKADAVGADP 399
                  455566677889999999********987766 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.6   1.3e-05      0.02      13     154 ..     256     410 ..     247     415 .. 0.68

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 1.3e-05
      AAA_16  13 lsale.rvrsgrp.elvllsGesGvGKsslvrellr..alekdggiflrgkcdqlesaipysa.laqalareellrqlldeaesaeleawrekleeala 106
                 +++l+ + r+g+  ++v ++G+   GKs+l+++l    ++ +d+ +f++ + ++   a+p    ++ +  + +++++l ++    +++a+r++l+e + 
  KOO20979.1 256 RDMLRaKRREGDRrPVVAIVGYTNAGKSTLLNTLCGssEVYADDLLFATLDPTSRLHALPGGKeVLLTD-TVGFIQKLPTK----LVAAFRATLDELVD 349
                 455554344444479****************99995224444456665555555545555533233333.33888888888....66666666666666 PP

      AAA_16 107 .....avpelagaeasrllellkrllallsrderplvlvlDdlq........wadeaslql 154
                       v ++++++a +  + ++ +++ l+  ++p +lvl  ++         a++as ++
  KOO20979.1 350 atllvHVVDASSEIAVQQVRSVQGIVKELEASGKPQILVLNKADavgadptlAARAASTDW 410
                 666798888888888888888888888888889999***9999966666665555566555 PP

>> Arf  ADP-ribosylation factor family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.0   0.0    0.0024       3.6      15      36 ..     270     291 ..     256     306 .. 0.81
   2 ?    5.4   0.1    0.0073        11      83     131 ..     351     398 ..     343     414 .. 0.86

  Alignments for each domain:
  == domain 1  score: 7.0 bits;  conditional E-value: 0.0024
                 EEEEEEESTTSSHHHHHHHHHH CS
         Arf  15 lrilllGLDnaGKtTilkklkl 36 
                   + ++G  naGK+T+l+ l  
  KOO20979.1 270 PVVAIVGYTNAGKSTLLNTLCG 291
                 55779*************9865 PP

  == domain 2  score: 5.4 bits;  conditional E-value: 0.0073
                 SEEEEEEETT-CTTHHHHHHHHHHHCTSGCCTTSEEEEEEE-TTSTTSS CS
         Arf  83 davifvvDsadreRleeakeeLkalleeeelkevallvlaNKqDlpeal 131
                 + +++vvD++ +  +++ +  ++ +++e e +  + +++ NK D+ +a 
  KOO20979.1 351 TLLVHVVDASSEIAVQQVR-SVQGIVKELEASGKPQILVLNKADAVGAD 398
                 4689*****9999998876.5899********************99885 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.0       2.7     4e+03     147     172 ..     233     252 ..     148     266 .. 0.61
   2 ?   13.6   0.0   4.9e-05     0.073      19      40 ..     269     290 ..     267     292 .. 0.92

  Alignments for each domain:
  == domain 1  score: -1.9 bits;  conditional E-value: 2.7
      AAA_23 147 elkdkkerleelekeleeledekkll 172
                 e        + ++k+l ++ed+   +
  KOO20979.1 233 E------DRRLFRKQLGKIEDDLAAV 252
                 1......2222233333333333333 PP

  == domain 2  score: 13.6 bits;  conditional E-value: 4.9e-05
      AAA_23  19 kgltlItGpNGaGKTTildAik 40 
                 +++++I+G + aGK+T+l+ ++
  KOO20979.1 269 RPVVAIVGYTNAGKSTLLNTLC 290
                 6899**************9988 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (443 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       528  (0.0294495); expected 358.6 (0.02)
Passed bias filter:                      463  (0.0258241); expected 358.6 (0.02)
Passed Vit filter:                        73  (0.00407162); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.56u 0.26s 00:00:00.82 Elapsed: 00:00:00.43
# Mc/sec: 3119.18
//
Query:       KOO20980.1  [L=22]
Description: hypothetical protein Ctob_000025 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (22 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       152  (0.00847788); expected 358.6 (0.02)
Passed bias filter:                      122  (0.00680462); expected 358.6 (0.02)
Passed Vit filter:                         3  (0.000167327); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.28u 0.24s 00:00:00.52 Elapsed: 00:00:00.37
# Mc/sec: 176.99
//
Query:       KOO20981.1  [L=629]
Description: splicing factor u2af 65 kda [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    6.1e-20   70.8   1.2    2.1e-08   33.9   0.0    5.1  5  RRM_1            RNA recognition motif. (a.k.a. RRM, RBD, or 
    3.9e-08   33.0   0.0        0.1   12.4   0.0    3.2  3  RRM_occluded     Occluded RNA-recognition motif
  ------ inclusion threshold ------
      0.054   13.1   0.0        7.2    6.3   0.0    2.6  2  SH3_6            SH3 domain (SH3b1 type)
       0.12   12.4   0.1        2.8    8.0   0.1    2.4  2  tRNA_anti-codon  OB-fold nucleic acid binding domain


Domain annotation for each model (and alignments):
>> RRM_1  RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.4   0.0    0.0035        16       1      21 [.     222     243 ..     222     244 .. 0.83
   2 !   12.1   0.0   2.9e-05      0.13      40      69 ..     269     297 ..     259     298 .. 0.93
   3 ?    0.4   0.0      0.13   5.7e+02       1       9 [.     386     394 ..     386     411 .. 0.71
   4 !   12.8   0.0   1.8e-05      0.08      23      69 ..     424     466 ..     421     467 .. 0.89
   5 !   33.9   0.0   4.6e-12   2.1e-08      13      70 .]     558     613 ..     551     613 .. 0.95

  Alignments for each domain:
  == domain 1  score: 5.4 bits;  conditional E-value: 0.0035
                 EEEESE.TTTSSHHHHHHHHHT CS
       RRM_1   1 lfVgnL.ppdvteeeLkelFsk 21 
                 l+VgnL    v++++Lke+Fs 
  KOO20981.1 222 LYVGNLaVGIVNQDMLKEFFSS 243
                 8*****44568999******96 PP

  == domain 2  score: 12.1 bits;  conditional E-value: 2.9e-05
                 EEEEEEESSHHHHHHHHHHHTTEEETTEEE CS
       RRM_1  40 gfafVeFeskedAekAlealngkklggrel 69 
                 +fafVeF ++  A  Al+ l++ ++ gr+l
  KOO20981.1 269 KFAFVEFRDELIAVTALQ-LDKVEFAGRPL 297
                 79****************.********987 PP

  == domain 3  score: 0.4 bits;  conditional E-value: 0.13
                 EEEESETTT CS
       RRM_1   1 lfVgnLppd 9  
                 l++gnLp++
  KOO20981.1 386 LYIGNLPTN 394
                 89****986 PP

  == domain 4  score: 12.8 bits;  conditional E-value: 1.8e-05
                 SCE.EEEEEEEETTTSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEE CS
       RRM_1  23 Gpi.ksiklvrdetgkskgfafVeFeskedAekAlealngkklggrel 69 
                 Gp+  +++l++d      +fafVeF ++   + Al  ++++++ gr l
  KOO20981.1 424 GPVvINVDLSTD-----GKFAFVEFRDETICTIALTLFDKMEVCGRAL 466
                 555589999999.....9*************************99986 PP

  == domain 5  score: 33.9 bits;  conditional E-value: 4.6e-12
                 HHHHHHHHTTSCEEEEEEEEETTTSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE CS
       RRM_1  13 eeLkelFskfGpiksiklvrdetgkskgfafVeFeskedAekAlealngkklggrelk 70 
                 +++k+  +  Gp+++ k+vr  tg+  g+afV+Fe   +A+kA e+l++++++g+++k
  KOO20981.1 558 DDIKTECETNGPVTEMKVVR--TGPMAGVAFVKFEMLVAAAKARESLDKRQFDGNTVK 613
                 7999999*************..8********************************986 PP

>> RRM_occluded  Occluded RNA-recognition motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.4   0.0   2.3e-05       0.1      27      72 ..     257     301 ..     231     305 .. 0.75
   2 !    7.8   0.0   0.00066         3      30      72 ..     428     470 ..     414     473 .. 0.90
   3 !    8.7   0.0   0.00034       1.5      22      73 ..     564     617 ..     548     619 .. 0.79

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 2.3e-05
  RRM_occluded  27 geikkivLvpdheGAivefkdekiagkasLaLdgsefegkklrcGt 72 
                    ++  ++L  + + A+vef+de ia   +L+Ld  ef+g+ l++G 
    KOO20981.1 257 PPVAVVQLSGEGKFAFVEFRDELIAV-TALQLDKVEFAGRPLNIGR 301
                   56777888888999*******99875.67***************97 PP

  == domain 2  score: 7.8 bits;  conditional E-value: 0.00066
  RRM_occluded  30 kkivLvpdheGAivefkdekiagkasLaLdgsefegkklrcGt 72 
                    ++ L +d + A+vef+de+i   a+   d +e  g+ l++G 
    KOO20981.1 428 INVDLSTDGKFAFVEFRDETICTIALTLFDKMEVCGRALNVGR 470
                   56889999999******************************97 PP

  == domain 3  score: 8.7 bits;  conditional E-value: 0.00034
  RRM_occluded  22 veek..egeikkivLvpdheGAivefkdekiagkasLaLdgsefegkklrcGtv 73 
                   +e++    e+k +   p  + A+v+f+   +a+ka  +Ld  +f+g++++ + v
    KOO20981.1 564 CETNgpVTEMKVVRTGPMAGVAFVKFEMLVAAAKARESLDKRQFDGNTVKASFV 617
                   555533345555566689999**************************9987765 PP

>> SH3_6  SH3 domain (SH3b1 type)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.3   0.0    0.0016       7.2      25      45 ..     255     275 ..     254     278 .. 0.91
   2 ?    3.9   0.0    0.0087        39      28      45 ..     425     443 ..     421     446 .. 0.78

  Alignments for each domain:
  == domain 1  score: 6.3 bits;  conditional E-value: 0.0016
                 TT-EEEEEEE-TTSSEEEEE- CS
       SH3_6  25 agtPVlilhaSkDgaWlfVet 45 
                 +g PV++   S  g+++fVe 
  KOO20981.1 255 MGPPVAVVQLSGEGKFAFVEF 275
                 688****************95 PP

  == domain 2  score: 3.9 bits;  conditional E-value: 0.0087
                 EEEEE.EE-TTSSEEEEE- CS
       SH3_6  28 PVlil.haSkDgaWlfVet 45 
                 PV+i    S+Dg+++fVe 
  KOO20981.1 425 PVVINvDLSTDGKFAFVEF 443
                 77774258*********95 PP

>> tRNA_anti-codon  OB-fold nucleic acid binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.6   0.0      0.06   2.7e+02      13      26 ..     265     278 ..     259     288 .. 0.86
   2 ?    8.0   0.1   0.00062       2.8      13      38 ..     433     458 ..     426     470 .. 0.80

  Alignments for each domain:
  == domain 1  score: 1.6 bits;  conditional E-value: 0.06
                      EEETTEEEEEEEET CS
  tRNA_anti-codon  13 rsggkvifidlrDg 26 
                       ++gk++f++ rD+
       KOO20981.1 265 SGEGKFAFVEFRDE 278
                      689**********7 PP

  == domain 2  score: 8.0 bits;  conditional E-value: 0.00062
                      EEETTEEEEEEEETT.EEEEEEEETHH CS
  tRNA_anti-codon  13 rsggkvifidlrDgt.griqvvlfree 38 
                         gk++f++ rD+t  +i ++lf+ +
       KOO20981.1 433 STDGKFAFVEFRDETiCTIALTLFD-K 458
                      5679*******************99.3 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (629 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       681  (0.0379832); expected 358.6 (0.02)
Passed bias filter:                      339  (0.0189079); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.62u 0.25s 00:00:00.87 Elapsed: 00:00:00.42
# Mc/sec: 4495.60
//
Query:       KOO20982.1  [L=3079]
Description: hypothetical protein Ctob_000029 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0038   17.3   5.0        1.2    9.4   0.0    4.4  4  CH_2       CH-like domain in sperm protein
  ------ inclusion threshold ------
      0.062   13.2   0.0         21    5.0   0.0    4.0  3  DUF4478    Pyrimidine/purine nucleotide 5'-monophosphate nucl
       0.29   11.0   3.9         14    5.6   0.3    4.5  4  EF-hand_8  EF-hand domain pair


Domain annotation for each model (and alignments):
>> CH_2  CH-like domain in sperm protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.4   0.0   0.00019       1.2      37      85 ..     867     915 ..     861     926 .. 0.78
   2 ?    1.6   0.0     0.051   3.1e+02      17      70 ..    1595    1648 ..    1586    1658 .. 0.85
   3 !    5.0   0.1    0.0043        26      36      86 ..    1709    1759 ..    1705    1763 .. 0.82
   4 ?   -2.6   0.1         1     6e+03      38      74 ..    2103    2139 ..    2099    2152 .. 0.74

  Alignments for each domain:
  == domain 1  score: 9.4 bits;  conditional E-value: 0.00019
        CH_2  37 klvdlhnysngsslaaklnNWetLekvlkklgiklskelieevasekpg 85 
                 +l ++h + + s+l++++ N++t++ v+ k + + s++++ e ++++++
  KOO20982.1 867 ELEEFHDFIKDSKLETRMINFTTMTNVFAKANASDSATVFMERMAGRRN 915
                 6779**************************9998777766555554444 PP

  == domain 2  score: 1.6 bits;  conditional E-value: 0.051
        CH_2   17 lkrdfsdGvlvAeilkkyypklvdlhnysngsslaaklnNWetLekvlkklgik 70  
                    r++s +v++   +k++  ++   ++ ++++ ++a ++NW++ +++l   ++k
  KOO20982.1 1595 PIRQMSAAVMITSFCKNLLGEENTEECMNTATLIKAERYNWKRYSQTLPGQSLK 1648
                  56999****************99999****************998888665555 PP

  == domain 3  score: 5.0 bits;  conditional E-value: 0.0043
        CH_2   36 pklvdlhnysngsslaaklnNWetLekvlkklgiklskelieevasekpga 86  
                   ++ ++h + +++ l++k+ N+++++  + k + + s  + ++ a++++ +
  KOO20982.1 1709 MEMAEFHDFIDECGLETKQVNFDLMTNNFIKANATNSGAVRDQHAESRRTS 1759
                  57789********************99998888887777777777766655 PP

  == domain 4  score: -2.6 bits;  conditional E-value: 1
        CH_2   38 lvdlhnysngsslaaklnNWetLekvlkklgiklske 74  
                  + ++h +     l++k++ +++++  + k + + +++
  KOO20982.1 2103 MDEFHDFVVDVGLETKQYKFDVMSTQFIKANATNTAQ 2139
                  56899999999************66666665554444 PP

>> DUF4478  Pyrimidine/purine nucleotide 5'-monophosphate nucleosidases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.9   0.0     0.033     2e+02      17      63 ..    1675    1721 ..    1669    1738 .. 0.81
   2 ?   -0.4   0.0      0.18   1.1e+03      41      72 ..    2091    2122 ..    2046    2128 .. 0.65
   3 ?    5.0   0.0    0.0036        21      14      63 ..    2453    2502 ..    2450    2516 .. 0.83

  Alignments for each domain:
  == domain 1  score: 1.9 bits;  conditional E-value: 0.033
                  HHTTSTSSSCHHHHHHHHHHHHHHTTT----SSSTTCGTTTT-EEEE CS
     DUF4478   17 verlkdsseselyelfRncalavLnsgsetDdskellekykdFdikv 63  
                  v+ + ++  +el  +f   +  +L sgs +D ++  + +++dF  + 
  KOO20982.1 1675 VHDILQKHFAELTLIFLAYCRSLLGSGSAEDAMEMEMAEFHDFIDEC 1721
                  777888888899999****************************6555 PP

  == domain 2  score: -0.4 bits;  conditional E-value: 0.18
                  TTT----SSSTTCGTTTT-EEEEEEETTEEEE CS
     DUF4478   41 nsgsetDdskellekykdFdikvlqkerGikl 72  
                  + +s +D ++  +++++dF ++v  +++  k+
  KOO20982.1 2091 SEDSAEDAMEMSMDEFHDFVVDVGLETKQYKF 2122
                  34566777777899******999877766555 PP

  == domain 3  score: 5.0 bits;  conditional E-value: 0.0036
                  HHHHHTTSTSSSCHHHHHHHHHHHHHHTTT----SSSTT.CGTTTT-EEEE CS
     DUF4478   14 qleverlkdsseselyelfRncalavLnsgsetDdskel.lekykdFdikv 63  
                  ++ev+ l +++ +el ++fR+ +  + +  +++D+s+++ +e+++dF i+ 
  KOO20982.1 2453 EAEVHDLLHANFKELASIFRSYCKSLGE-TATSDSSRTMdMEEFHDFVIDC 2502
                  689******************9987555.5666777776599*****9975 PP

>> EF-hand_8  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.0      0.31   1.9e+03      40      54 ..     971     985 ..     970     985 .. 0.90
   2 ?    5.6   0.3    0.0023        14       5      44 ..    1307    1347 ..    1306    1349 .. 0.85
   3 ?   -2.9   0.1       1.1   6.3e+03      43      53 ..    1970    1980 ..    1969    1983 .. 0.73
   4 ?    2.7   0.1      0.02   1.2e+02       3      31 ..    2099    2125 ..    2097    2129 .. 0.89

  Alignments for each domain:
  == domain 1  score: -1.2 bits;  conditional E-value: 0.31
   EF-hand_8  40 dGkisfeEFcvller 54 
                 d++++++EF+ +l+r
  KOO20982.1 971 DNRLTLTEFLGCLVR 985
                 789********9975 PP

  == domain 2  score: 5.6 bits;  conditional E-value: 0.0023
   EF-hand_8    5 Itreelrrilrilglkk.glseeevdilfrefDtdgdGkis 44  
                  +t++e+++ ++ +gl+  +l  + ++ +f+++   ++++++
  KOO20982.1 1307 MTMTEFKDLVKDVGLETkDLKFDVMCNMFKKANALNSNAVM 1347
                  8*******99999***8889999999999998888887776 PP

  == domain 3  score: -2.9 bits;  conditional E-value: 1.1
   EF-hand_8   43 isfeEFcvlle 53  
                  ++feEF+++ +
  KOO20982.1 1970 LDFEEFLECCA 1980
                  78899988755 PP

  == domain 4  score: 2.7 bits;  conditional E-value: 0.02
   EF-hand_8    3 gkItreelrrilrilglkkglseeevdil 31  
                  ++++++e+++++  +gl+  +  +++d++
  KOO20982.1 2099 MEMSMDEFHDFVVDVGLE--TKQYKFDVM 2125
                  899*********888***..999999998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (3079 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       824  (0.0459591); expected 358.6 (0.02)
Passed bias filter:                      519  (0.0289475); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 1.39u 0.31s 00:00:01.70 Elapsed: 00:00:00.53
# Mc/sec: 17364.89
//
Query:       KOO20983.1  [L=261]
Description: prolyl 4-hydroxylase alpha subunit [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.2e-13   51.8   0.0    5.9e-13   49.5   0.0    1.9  2  2OG-FeII_Oxy_3  2OG-Fe(II) oxygenase superfamily
  ------ inclusion threshold ------
      0.024   15.1   0.0      0.043   14.3   0.0    1.4  1  2OG-FeII_Oxy    2OG-Fe(II) oxygenase superfamily


Domain annotation for each model (and alignments):
>> 2OG-FeII_Oxy_3  2OG-Fe(II) oxygenase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.5   0.0      0.26   2.3e+03       8      24 ..      37      49 ..      32      75 .. 0.70
   2 !   49.5   0.0   6.6e-17   5.9e-13       2      96 .]     131     232 ..     130     232 .. 0.84

  Alignments for each domain:
  == domain 1  score: -0.5 bits;  conditional E-value: 0.26
                    TT-EEEEE-SS----TT CS
  2OG-FeII_Oxy_3  8 egqeykpHvDnfekeeg 24
                     g +++ H D+     g
      KOO20983.1 37 SGMHLHIHEDYP----G 49
                    588999999984....3 PP

  == domain 2  score: 49.5 bits;  conditional E-value: 6.6e-17
                     EEEEE-TT-EEEEE-SS--........--TT.-.EEEEEEEEE....ET-B--EEE..........---TT-EEEEE-..B-T........EEE- CS
  2OG-FeII_Oxy_3   2 qvlrygegqeykpHvDnfe........keegsgqrrltvllyLnekeseeGGelelyekdkeavkikpkkgrlvlFesdellp........Hevl 80 
                     qv+ry++gq+y+ H+D+++        +e+g g r +tvl+y+n  +   GG  ++   +    +++p+kg++++F+ + + +        He+l
      KOO20983.1 131 QVARYECGQFYRMHYDSTDaessgrmsDEPG-GPRACTVLIYCN--DVAVGGGTRF---NMLGLQLQPRKGTALVFFPTFT-DgtidtdtlHEAL 218
                     99**************999******965555.99*********8..4467777666...3356677********9999655.469********** PP

                     -B.-SS-EEEEEEEEE CS
  2OG-FeII_Oxy_3  81 pvtkggeRlsltgwir 96 
                     p     +++++ +w+r
      KOO20983.1 219 PA-D-ETKFVCQIWVR 232
                     *7.3.4********86 PP

>> 2OG-FeII_Oxy  2OG-Fe(II) oxygenase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   0.0   4.8e-06     0.043       5     100 ..     131     232 ..     128     233 .. 0.68

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 4.8e-06
                   EEEEE.....E-S------..---EEEEEESSS....EEEEEEE-...TT---EEEETEEEE----TTEEEEEE-HHHHHHTTS....-S----EEE CS
  2OG-FeII_Oxy   5 lvlny.....ypphpdpev..ilglgahtdasl....ltillqdd...vgglevfkdgkwlrvppvdnslivniGdallflsng....ryksvlHrV 83 
                   +v++y     y  h d  +  ++g    +d +      t+l+ ++   v        g+ +r ++  ++l++ +G al f++       ++++lH++
    KOO20983.1 131 QVARYecgqfYRMHYDSTDaeSSG--RMSDEPGgpraCTVLIYCNdvaV--------GGGTRFNMLGLQLQPRKGTALVFFPTFtdgtIDTDTLHEA 217
                   566666666667776655543333..22222222444566555552224........445689**************999988778899******** PP

                   ----GTGSEEEEEEEE- CS
  2OG-FeII_Oxy  84 lpvnegerRvsiayfie 100
                   lp +e+  ++ +  +++
    KOO20983.1 218 LPADET--KFVCQIWVR 232
                   *99994..899999976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (261 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       322  (0.0179597); expected 358.6 (0.02)
Passed bias filter:                      283  (0.0157845); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.41u 0.25s 00:00:00.65 Elapsed: 00:00:00.41
# Mc/sec: 1890.23
//
Query:       KOO20984.1  [L=153]
Description: 14 kda zinc-binding [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.9e-24   84.7   0.0    7.6e-24   84.3   0.0    1.1  1  HIT       HIT domain
    4.5e-17   62.6   0.0    5.5e-17   62.3   0.0    1.1  1  DcpS_C    Scavenger mRNA decapping enzyme C-term binding


Domain annotation for each model (and alignments):
>> HIT  HIT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   84.3   0.0   8.4e-28   7.6e-24       3      97 ..      52     147 ..      50     148 .. 0.93

  Alignments for each domain:
  == domain 1  score: 84.3 bits;  conditional E-value: 8.4e-28
                 CC-CCEEEE-SSEEEEE-SS-SSSSEEEEEESS..TGCSGGGCC...HHHHHHHHHHHHHHHHHHHTCTTCCCEEEEEEESGGGT-SSSS-EEEEEEC- CS
         HIT   3 eipstvvyeddlvlafldidpkapghlLvipkk..hlselhdlt...eeelakllsavkkvakalqkkfknkglrvvinngahagqsvahlHiHviprr 96 
                  ips++vyeddl++af+di+p ap+h+L+ipk+   l  l  +t   e++l++l++++  +ak+++     + +r+v+n g+ a+qsv hlH+H++++r
  KOO20984.1  52 RIPSDKVYEDDLCYAFRDINPVAPTHILLIPKQrdGLIGLGAATaehEAILGHLMVTAAAIAKKEGL----NDFRLVTNSGPGACQSVSHLHLHILGGR 146
                 69******************************9655888988888899******************8....589***********************99 PP

                 T CS
         HIT  97 e 97 
                 +
  KOO20984.1 147 Q 147
                 7 PP

>> DcpS_C  Scavenger mRNA decapping enzyme C-term binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.3   0.0   6.2e-21   5.5e-17       2     101 ..      43     144 ..      42     149 .. 0.96

  Alignments for each domain:
  == domain 1  score: 62.3 bits;  conditional E-value: 6.2e-21
                 -HHHHHHTTSS-B-EEEE-SSEEEEE-SS-SSSEEEEEEESS..---SGGG--TTTTTHHHHHHHHHHHHHHHTT-T-EEEEE--SCCCT--S-S--EE CS
      DcpS_C   2 wvfnilakgkepervvyedekfvvlkDikpkaklhllvipkr..dikslrdLtkehlpllkemrekakkvieekynevdaeelrvgvhyqPsvyhlHlH 98 
                 ++f+++  +++p++ vyed+ + +++Di+p a++h+l ipk+   +  l   t+eh  +l +++ +a ++++++  +  +   + g  + +sv+hlHlH
  KOO20984.1  43 TIFDEILARRIPSDKVYEDDLCYAFRDINPVAPTHILLIPKQrdGLIGLGAATAEHEAILGHLMVTAAAIAKKEGLNDFRLVTNSGPGACQSVSHLHLH 141
                 6899999***********************************999******************************9999999***************** PP

                 EEE CS
      DcpS_C  99 vis 101
                 ++ 
  KOO20984.1 142 ILG 144
                 986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (153 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       229  (0.0127726); expected 358.6 (0.02)
Passed bias filter:                      220  (0.0122706); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.35u 0.26s 00:00:00.61 Elapsed: 00:00:00.39
# Mc/sec: 1179.41
//
Query:       KOO20985.1  [L=394]
Description: hypothetical protein Ctob_000044, partial [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (394 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       383  (0.021362); expected 358.6 (0.02)
Passed bias filter:                      339  (0.0189079); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.47u 0.21s 00:00:00.68 Elapsed: 00:00:00.37
# Mc/sec: 3150.11
//
Query:       KOO20986.1  [L=162]
Description: hypothetical protein Ctob_000042 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (162 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       553  (0.0308439); expected 358.6 (0.02)
Passed bias filter:                      325  (0.0181271); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.21s 00:00:00.56 Elapsed: 00:00:00.35
# Mc/sec: 1389.83
//
Query:       KOO20987.1  [L=888]
Description: hypothetical protein Ctob_000040 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
  ------ inclusion threshold ------
      0.062   12.6   0.1      0.095   12.0   0.1    1.2  1  Glyco_hydro_42  Beta-galactosidase


Domain annotation for each model (and alignments):
>> Glyco_hydro_42  Beta-galactosidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.1   5.3e-06     0.095      31      87 ..      82     142 ..      74     188 .. 0.75

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 5.3e-06
                     TT-HHHH-SBTTB---HHHHHHHHHHHCTT....-EEEEE-STTS--HHHHHH-GGGS-B- CS
  Glyco_hydro_42  31 efaWaklePeegkydFewLdevldllekag....ikviLatptaapPaWlvkkyPeilavd 87 
                     ++ W+  eP+ +++d++ +d +l  + k++    + +   ++ +  P+Wl+++  e+ +  
      KOO20987.1  82 IVRWSDFEPKPDEFDWAAFDSLLLDVTKRNkpfaVGITFLSGPNYYPQWLFESPFEVTKYA 142
                     678*****************99888877763322456666778899***999877776654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (888 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       296  (0.0165096); expected 358.6 (0.02)
Passed bias filter:                      241  (0.0134419); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.57u 0.24s 00:00:00.81 Elapsed: 00:00:00.38
# Mc/sec: 6975.80
//
Query:       KOO20988.1  [L=5448]
Description: hypothetical protein Ctob_000046 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    5.4e-22   78.2   0.0    1.3e-21   77.0   0.0    1.6  1  DUF3638      Protein of unknown function (DUF3638)
    2.5e-13   49.1   0.2    5.9e-13   47.9   0.2    1.7  1  DUF3645      Protein of unknown function (DUF3645)
    5.8e-12   45.4   0.0    4.7e-11   42.4   0.0    2.2  1  ART          NAD:arginine ADP-ribosyltransferase
    1.5e-09   37.7   0.1    3.3e-09   36.7   0.1    1.6  1  Thioredoxin  Thioredoxin
    3.8e-07   30.6   0.0    0.00066   20.2   0.0    4.7  4  Ank_2        Ankyrin repeats (3 copies)
    7.3e-06   25.5   0.2     0.0045   16.8   0.1    3.4  3  EF-hand_6    EF-hand domain
    0.00019   21.8   2.2      0.002   18.6   0.1    3.5  3  EF-hand_7    EF-hand domain pair
  ------ inclusion threshold ------
      0.012   15.1   0.8        7.9    6.3   0.0    3.0  2  EF-hand_1    EF hand
      0.027   14.8   0.0        8.1    6.9   0.0    3.0  2  Ank_5        Ankyrin repeats (many copies)
      0.057   14.0   0.1        1.8    9.3   0.0    3.7  4  Ank_4        Ankyrin repeats (many copies)


Domain annotation for each model (and alignments):
>> DUF3638  Protein of unknown function (DUF3638)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   77.0   0.0   7.4e-25   1.3e-21      10     216 ..    2443    2663 ..    2438    2671 .. 0.82

  Alignments for each domain:
  == domain 1  score: 77.0 bits;  conditional E-value: 7.4e-25
     DUF3638   10 pewLlleiesniliReeQaevAkemisps.....sgensvlQLnmGeGKssvIvPivaaaladgkkLvrvivlkpllkqmaqlLvskLggllnrrvy 101 
                  p+ L +e   ++++R  Q++     ++++     ++++ v Q+ mG GK+sv+ P++ ++la+g+ Lv  +++ +ll  ++++L +++++ +++rvy
  KOO20988.1 2443 PRFLAFEFIWSLQLRARQVDLVLDCVRAAsapdeRQRSIVKQMIMGAGKTSVVSPLISLMLAQGEYLVVQCMPAALLPMSFNILRTTFSSAIQKRVY 2539
                  788999999999******99887776654222335677899******************************************************** PP

     DUF3638  102 hlpfsRslklteekaeairklleeclkeggvllvqpehilSfkLmglekllskkeek.......vakelletqkwldessrd...ilDEsDells.v 187 
                   +  +Rs+      ++a+++ + + +++++v++++p+ i S++L  +e+l+ +++++       + +  +e+   l + +r    i+DE+D +l+  
  KOO20988.1 2540 TFACERSTA----GTSALEAKMVSAKERSAVVVTTPQAIKSLHLNFIESLTIATDSSnaryrnpELRPSVEVWASLLKLMRAgccIMDEVDLVLHpL 2632
                  ******665....55667788889999*********************9876555446789888444444544444444442233*********945 PP

     DUF3638  188 kfeLiYtvGsqepvegsp..dRwkvvqevLs 216 
                  k eL +++G++e+++++   +Rw+v   +++
  KOO20988.1 2633 KSELNFPIGKKERLDFTDggQRWQVPAVLFD 2663
                  9*************9875449***9887776 PP

>> DUF3645  Protein of unknown function (DUF3645)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.9   0.2   3.3e-16   5.9e-13       1      33 []    2857    2889 ..    2857    2889 .. 0.97

  Alignments for each domain:
  == domain 1  score: 47.9 bits;  conditional E-value: 3.3e-16
     DUF3645    1 dpsRtllAVPYrAKDvPserSEFsHpDvvIvLT 33  
                  ++sR +lA+P+ +KDvP++ SEF++pDvvI+LT
  KOO20988.1 2857 PRSRAKLAIPFISKDVPAPASEFAQPDVVIGLT 2889
                  589*****************************9 PP

>> ART  NAD:arginine ADP-ribosyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.4   0.0   2.6e-14   4.7e-11       4     201 ..    4979    5215 ..    4977    5224 .. 0.81

  Alignments for each domain:
  == domain 1  score: 42.4 bits;  conditional E-value: 2.6e-14
         ART    4 asnafddqykgcleemea...klpsllkeefaakqala.esweqakkkwker.....kaklelpegfkdehgiAllaYtssselyrelneavreaGr 91  
                  +++ + d+y+  +e +e+   kl++ +++ f+ k +l+ +++    +++ +      + k++++     +h  Al++Yt++s++y++ n+a+r +G 
  KOO20988.1 4979 VPKHYPDDYAEHAEPLEEflkKLGDKNEDAFSHKGELRaDEFDGKMSRLLAFaklfvQDKVATGCTVAPKHIFALHLYTMQSSIYEDTNAAMR-GGD 5074
                  5667777777776655542215666666677777666424555555665533445558888899999**************************.788 PP

         ART   92 sreeylsnfdfkalhfyLtraLqlLrkdsqrcsqvyRgvk...............................glrfsrakkgksvRfgqFtssslkkk 157 
                  +++  +    + ++ f L raL++L++   r+  v+Rg++                                +  +  ++gk v   +F s  ++  
  KOO20988.1 5075 AKKIKV----WMPFIFHLDRALAALNA---RSTIVFRGIHlprdssgdgtvrkfldgnthlrgckdamaqdEIDVT-YHEGKRVLWPAFSSMTTDPA 5163
                  777655....68***************...9*******************************99999887655555.56788999999999999998 PP

         ART  158 vae........efgqdtllsiktclgvpIkefskfpsedevLIppfevFkvt 201 
                  +a           + +++++i+t  + pI+efs++p e+e   p+ + F++ 
  KOO20988.1 5164 IALayatknldTMEAAVIFKIHTRKAYPIREFSYYPFEEELVYPGSTCFRIK 5215
                  8877788888788999*********************************976 PP

>> Thioredoxin  Thioredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.7   0.1   1.8e-12   3.3e-09       4     102 ..    4229    4331 ..    4226    4332 .. 0.93

  Alignments for each domain:
  == domain 1  score: 36.7 bits;  conditional E-value: 1.8e-12
                   ESSHHHHHHHHTTTSSEEEEEEE-TTSHHHHCHHHHHHHHHHHCTT..TSEEEEEETTTSHHHHHHTT-SSSSEEEEEETTE..EEEEEESS-HHH CS
  Thioredoxin    4 vltkenFeeevakekklvlveFyApwCghCkalaPeleklaeelkd..kvklakvdvdenedlakkyevegiPtlklfkngk..evkkyegareke 95  
                   ++t++nF++ev +++ ++lv F A+wC+  k+ +P++ +la+ l++  +v++   d++ n+   k y   +iP +k+f  gk  ++  yeg+r+ +
   KOO20988.1 4229 TFTAANFDKEVIDADADCLVVFSADWCPASKKAKPHVLDLAKLLAEcdDVRVGLFDTELNQADRKYYWEGSIPCFKFFVRGKkqRPMCYEGERKVN 4324
                   6799*****************************************999************99999999999**********97778899****999 PP

                   HHHHHHH CS
  Thioredoxin   96 klaaflk 102 
                   +++++++
   KOO20988.1 4325 AFMRYIA 4331
                   9998886 PP

>> Ank_2  Ankyrin repeats (3 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.1   0.0      0.71   1.3e+03      27      74 ..     320     342 ..     288     361 .. 0.56
   2 ?    4.6   0.0     0.028        51      12      72 ..    4471    4546 ..    4466    4555 .. 0.73
   3 !   20.2   0.0   3.7e-07   0.00066       4      76 ..    4534    4612 ..    4531    4617 .. 0.81
   4 ?    0.3   0.0       0.6   1.1e+03      18      61 ..    4732    4805 ..    4716    4819 .. 0.60

  Alignments for each domain:
  == domain 1  score: 0.1 bits;  conditional E-value: 0.71
       Ank_2  27 ktaLhyAakngnleivklLlehadndgrtpLhyAars..ghleivklLle 74 
                 +                           tp++ A ++  + le+v+++l 
  KOO20988.1 320 R---------------------------TPMYSATSHyrSLLEVVRYMLR 342
                 4...........................5555555444334555555553 PP

  == domain 2  score: 4.6 bits;  conditional E-value: 0.028
       Ank_2   12 lvklLl.egadpn.k.ngktaLhyAakngnleivklLle.h............adndgrtpLhyAarsghleivklL 72  
                  ++ +L+  g  ++ + +g+t  h++a++g+ + + lL + +            a+++g+ p+ +Aa  g+  +v+ L
  KOO20988.1 4471 VLAQLIrRGLSLDtQpQGLTMCHLCASYGD-DYLPLLNQlYwsganiaaastsARSHGMLPIELAATMGYVAAVRRL 4546
                  666777777666664699999999999997.7777776651445456665555558899999999999999988877 PP

  == domain 3  score: 20.2 bits;  conditional E-value: 3.7e-07
       Ank_2    4 AakngnlelvklLl.egadpnkngktaLhyAakngnleivklLleh......ad...ndgrtpLhyAarsghleivklLlekg 76  
                  Aa  g+  +v+ L+  g+ ++     aL++A+++ ++e+v lLl++      a+       tpL +A+  g+++++++L+++ 
  KOO20988.1 4534 AATMGYVAAVRRLHaMGSPIG----RALFCAIEESQIEVVNLLLKElkvpidARwagHFHVTPLEWAVILGSTDVAEVLIKYH 4612
                  666676778899987777777....8******************97778855335447788*******************654 PP

  == domain 4  score: 0.3 bits;  conditional E-value: 0.6
       Ank_2   18 egadpn..k.ngktaLhyAakngnleivklLleh.....................ad......ndgrtpLhyAa 61  
                  +g dp   +  g+t +++ a +    ++++Ll++                     a+       +g t+L++++
  KOO20988.1 4732 KGGDPAcqNdIGWTCMMVVALASEPVAAEALLQErtlvagkdsdpveeqrrqaeaARvlyatsASGLTALMWSS 4805
                  55555443247899999888877656678888744444444545544444443331133333455999999875 PP

>> EF-hand_6  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.7   0.0       9.6   1.7e+04      15      25 ..     416     426 ..     414     428 .. 0.84
   2 !   16.8   0.1   2.5e-06    0.0045       2      27 ..    3814    3839 ..    3813    3842 .. 0.90
   3 ?    4.7   0.0     0.019        35      10      27 ..    3858    3875 ..    3852    3878 .. 0.89

  Alignments for each domain:
  == domain 1  score: -3.7 bits;  conditional E-value: 9.6
   EF-hand_6  15 GkidaeElrka 25 
                 G++d++El ++
  KOO20988.1 416 GTLDPQELCAV 426
                 8*******986 PP

  == domain 2  score: 16.8 bits;  conditional E-value: 2.5e-06
   EF-hand_6    2 lreaFklfDkdgdGkidaeElrkalr 27  
                  +++aF +fD++ dG++d eE+ ++l 
  KOO20988.1 3814 IEDAFSYFDNSPDGELDEEEVLDMLI 3839
                  789********************997 PP

  == domain 3  score: 4.7 bits;  conditional E-value: 0.019
   EF-hand_6   10 DkdgdGkidaeElrkalr 27  
                  Dkdg+ +i+++E+r+ l+
  KOO20988.1 3858 DKDGSLTISIKEFRQYLN 3875
                  899999*********996 PP

>> EF-hand_7  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.2   0.1       0.6   1.1e+03       3      53 ..    3583    3628 ..    3581    3645 .. 0.78
   2 !   18.6   0.1   1.1e-06     0.002       3      69 ..    3813    3873 ..    3812    3875 .. 0.91
   3 ?   -1.4   0.0       1.9   3.4e+03       2      36 ..    4918    4956 ..    4917    5020 .. 0.59

  Alignments for each domain:
  == domain 1  score: 0.2 bits;  conditional E-value: 0.6
   EF-hand_7    3 klkeaFkelDtdgdgyldkeellrllrkifqgagegsklsdeelellfkef 53  
                  ++  +F++l   ++g+l ++ ++ llr        + +++d+e+++ ++ +
  KOO20988.1 3583 AMNKVFDLLKFPRSGRLPMRAIQLLLRE-----TFDRPFDDQEVRTAVRAV 3628
                  56678****************9999998.....778899999999887776 PP

  == domain 2  score: 18.6 bits;  conditional E-value: 1.1e-06
   EF-hand_7    3 klkeaFkelDtdgdgyldkeellrllrkifqgagegsklsdeelellfkefDtdkdGvisfdEFlkl 69  
                   +++aF  +D+  dg ld+ee+l++l       + g +  +  + +++   D+d++ +is  EF+++
  KOO20988.1 3813 NIEDAFSYFDNSPDGELDEEEVLDMLI------RLGLPCKPVDVLRFITSADKDGSLTISIKEFRQY 3873
                  5899*****************888999......788887888899********************98 PP

  == domain 3  score: -1.4 bits;  conditional E-value: 1.9
   EF-hand_7    2 eklkeaFkelDtdgdgyldkeellrllrkifqga.....g 36  
                  e+lk+a+++ D  ++  l+ +  ++l r+ ++g      +
  KOO20988.1 4918 ERLKCAYRAADAEDRELLTFDP-RHLRRSVSDGGggaldE 4956
                  7899999999999999888766.33555555544444440 PP

>> EF-hand_1  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.1   0.2     0.005       8.9       2      28 ..    3814    3840 ..    3813    3841 .. 0.92
   2 ?    6.3   0.0    0.0044       7.9       4      27 ..    3852    3875 ..    3849    3877 .. 0.86

  Alignments for each domain:
  == domain 1  score: 6.1 bits;  conditional E-value: 0.005
                  HHHHHHHHTTTSSSEEEHHHHHHHHHH CS
   EF-hand_1    2 lkeiFrefDkDgdGkIdfeEfkellkk 28  
                  ++++F+ fD   dG +d eE +++l +
  KOO20988.1 3814 IEDAFSYFDNSPDGELDEEEVLDMLIR 3840
                  789*********************976 PP

  == domain 2  score: 6.3 bits;  conditional E-value: 0.0044
                  HHHHHHTTTSSSEEEHHHHHHHHH CS
   EF-hand_1    4 eiFrefDkDgdGkIdfeEfkellk 27  
                  +++  +DkDg+ +I+++Ef+++l+
  KOO20988.1 3852 RFITSADKDGSLTISIKEFRQYLN 3875
                  567789**************9986 PP

>> Ank_5  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.5   0.0     0.025        44      13      42 ..    4524    4553 ..    4518    4555 .. 0.90
   2 ?    6.9   0.0    0.0045       8.1      12      41 ..    4585    4614 ..    4573    4617 .. 0.80

  Alignments for each domain:
  == domain 1  score: 4.5 bits;  conditional E-value: 0.025
       Ank_5   13 dgggntpLhvAakygaadvvrlLlargadl 42  
                  + +g++p+ +Aa  g+   vr+L+a+g+ +
  KOO20988.1 4524 RSHGMLPIELAATMGYVAAVRRLHAMGSPI 4553
                  679*********************988765 PP

  == domain 2  score: 6.9 bits;  conditional E-value: 0.0045
       Ank_5   12 ldgggntpLhvAakygaadvvrlLlargad 41  
                     + +tpL +A+  g+ dv+++L++++a 
  KOO20988.1 4585 AGHFHVTPLEWAVILGSTDVAEVLIKYHAQ 4614
                  555567*******************98875 PP

>> Ank_4  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.0       2.7   4.8e+03      19      49 ..    1000    1030 ..     997    1039 .. 0.75
   2 ?    3.3   0.0     0.072   1.3e+02       2      55 .]    4528    4573 ..    4527    4573 .. 0.86
   3 ?    9.3   0.0   0.00099       1.8       3      55 .]    4555    4609 ..    4553    4609 .. 0.87
   4 ?   -3.1   0.0       7.4   1.3e+04      26      43 ..    4735    4751 ..    4729    4754 .. 0.82

  Alignments for each domain:
  == domain 1  score: -1.7 bits;  conditional E-value: 2.7
       Ank_4   19 lLlekgadinaqdnrsGetalhiAakrgnve 49  
                   Ll++ +++  q+ r+  t l+ ++ + +v+
  KOO20988.1 1000 DLLSQVIQLGTQPFRCKTTSLILCVIGLFVH 1030
                  57778888899988***********998743 PP

  == domain 2  score: 3.3 bits;  conditional E-value: 0.072
       Ank_4    2 ltaLhyaaisgrlelvrlLlekgadinaqdnrsGetalhiAakrgnveilklLl 55  
                  + ++  aa +g + +vr+L++ g  i +        al +A+  +++e++ lLl
  KOO20988.1 4528 MLPIELAATMGYVAAVRRLHAMGSPIGR--------ALFCAIEESQIEVVNLLL 4573
                  5678889999999999999999999888........599999999999999997 PP

  == domain 3  score: 9.3 bits;  conditional E-value: 0.00099
       Ank_4    3 taLhyaaisgrlelvrlLl.ekgadinaqdnrsGe..talhiAakrgnveilklLl 55  
                  +aL+ a++++++e+v lLl e ++ i+a+  + ++  t+l  A+  g+ ++++ L+
  KOO20988.1 4555 RALFCAIEESQIEVVNLLLkELKVPIDAR-WAGHFhvTPLEWAVILGSTDVAEVLI 4609
                  58*****************677*******.76655449999999999999999987 PP

  == domain 4  score: -3.1 bits;  conditional E-value: 7.4
       Ank_4   26 dinaqdnrsGetalhiAa 43  
                  d+ +q n+ G+t++  +a
  KOO20988.1 4735 DPACQ-NDIGWTCMMVVA 4751
                  77888.9*****997665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (5448 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       834  (0.0465168); expected 358.6 (0.02)
Passed bias filter:                      618  (0.0344693); expected 358.6 (0.02)
Passed Vit filter:                        63  (0.00351386); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 1.94u 0.28s 00:00:02.21 Elapsed: 00:00:00.50
# Mc/sec: 32915.61
//
Query:       KOO20989.1  [L=1142]
Description: tubulin-tyrosine ligase family protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
      2e-53  181.5   0.0    3.1e-53  180.8   0.0    1.2  1  TTL             Tubulin-tyrosine ligase family
    1.2e-15   57.4   0.0    3.5e-15   55.9   0.0    1.7  1  NAP             Nucleosome assembly protein (NAP)
     0.0091   15.3   0.0      0.016   14.5   0.0    1.3  1  ATPgrasp_YheCD  YheC/D like ATP-grasp
  ------ inclusion threshold ------
       0.02   14.2   0.3      0.035   13.4   0.3    1.3  1  Glyco_hydro_42  Beta-galactosidase


Domain annotation for each model (and alignments):
>> TTL  Tubulin-tyrosine ligase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  180.8   0.0   6.9e-57   3.1e-53       7     271 ..     792    1106 ..     787    1111 .. 0.92

  Alignments for each domain:
  == domain 1  score: 180.8 bits;  conditional E-value: 6.9e-57
                  S-SS-SSS--EEEE--------------------...-------TTHHHHHHHTTTS--S-......B----SS---XX------BSSTHHHHHH.. CS
         TTL    7 kdqllnhfpnsseitrkdllvknlkrtkkklekk.lkflprtfvlpadlaefveeaekees......ntwIvKpsasarGkgirvfnkledikki.. 94  
                  ++q++n+fp+ + +t k  l+ +++ ++k ++   ++f+p+ fvlp  l++++++  ++ s       +wI+Kp   + +kg+ + +k ++   i  
  KOO20989.1  792 PWQRINKFPQTTALTSKLALWTHFEAMQKLHGGAsYDFMPECFVLPGSLEAYESHLARRLSepdganDLWILKPDDVDLSKGVSLASKGASCG-Igi 887 
                  49***************************999877******************99999888899**9******************99988877.557 PP

                  .......................HH..SSS-EEEEB--SSB--BTTEEEEEEEEEEE-..TT-XXXXXXXXXXXXXXXXXX..XXXXXXXXXXXXXX CS
         TTL   95 .......................vsqsqkeplvvqkYierPLLidgrKFDlRlyvlvtsvnpLrvYvYkegllRfasvkYspsvsdlddlevHLTNy 168 
                                              + + v+++Yi+ P+L++g K D Rlyvlvts++pL +Y+Y+egl Rfa+++Y+  + d++ +++HLTNy
  KOO20989.1  888 flhratrssrwggwgggggggllSDAVRRHRGVACRYIDPPMLMGGYKSDVRLYVLVTSFHPLVCYLYNEGLGRFATEPYT--TRDIETRTAHLTNY 982 
                  9*********************9777889999*************************************************..9************* PP

                  XXXXXXX.......X.XXXXXXXXXXXXXXXXXXXXXXXX....XXXXXXXXXXXXXXXXXXXXX..........XXXXXXXXXXXXXXXXXXXXXX CS
         TTL  169 siqkksk.......s.lneesnekkgkkwslqelekylee....vrkeeiweeiesiiiktilaae.........veasrlnvqrlkncfelyGvDi 244 
                  si+k+s+          +  +    g+kw+l++ +k+  e      + + w+++ ++iik++la e           ++  + +++++cf+++G+D+
  KOO20989.1  983 SINKHSStfvapqaTlASAADADATGSKWTLSAYKKRMVEqlgeAVAARAWASVDDLIIKALLAVEptvtrateaQLPAEAHGAPNQHCFQVFGFDV 1079
                  *****999998865235667778899*********999887777778899*****************999987754555667899************ PP

                  XXXXXXXXXXXXXXXXX..XXXXXXXX CS
         TTL  245 lidenlkpwLlEvNasPdlksttklda 271 
                  l+d + kpwLlE N  P+l ++t+ld 
  KOO20989.1 1080 LFDAAAKPWLLEANLDPSLDADTPLDL 1106
                  ***********************9986 PP

>> NAP  Nucleosome assembly protein (NAP)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.9   0.0   7.9e-19   3.5e-15      79     193 ..     489     591 ..     455     698 .. 0.81

  Alignments for each domain:
  == domain 1  score: 55.9 bits;  conditional E-value: 7.9e-19
                 .--SSSSTTSTTHHHHHHHTSHHHHTT--HHHHHHHTTEEEEEEEE-------EEEEEEEE.-S-SSB--SEEEEEEEE----........----EEEE CS
         NAP  79 eekkeeakgipeFWltvlknvellaeliqerDepiLkhLkdirveyllskekegFtleFeF.deNpyFtnevLtktyilksevdkedpfiydgpeieka 176
                  e++     i  FW +++  + +l++  ++rD++iL hL+d+rve    + + g+tl  +F ++Np+F+n+vL+k+ ++       d        + + 
  KOO20989.1 489 AERARALTAIRGFWRRAILGHGTLERFATKRDREILTHLEDVRVEE-AADVHSGYTLILTFnESNPFFSNRVLEKRITWT------D-------GLLRL 573
                 556667789************************************8.556699********889*************999......2.......34566 PP

                 EE----B-T.T--TTS-- CS
         NAP 177 egckIdWke.gkdvtvkt 193
                 e ++I W++ + d  v +
  KOO20989.1 574 EASEIAWRRpEYDPEVAL 591
                 777777776566666655 PP

>> ATPgrasp_YheCD  YheC/D like ATP-grasp
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.5   0.0   3.5e-06     0.016     203     240 ..    1070    1108 ..    1051    1129 .. 0.84

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 3.5e-06
  ATPgrasp_YheCD  203 r.lgElGlDlgidkegkvWllEvNskpgrsifkeagdke 240 
                      + +  +G+D+  d   k WllE+N  p+  + + ++ k+
      KOO20989.1 1070 HcFQVFGFDVLFDAAAKPWLLEANLDPSLDADTPLDLKT 1108
                      557779**********************98888776644 PP

>> Glyco_hydro_42  Beta-galactosidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.3   7.9e-06     0.035      31      95 ..      82     150 ..      69     160 .. 0.80

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 7.9e-06
                     TT-HHHH-SBTTB---HHHHHHHHHHHCTT....-EEEEE-STTS--HHHHHH-GGGS-B-TTS-B--S CS
  Glyco_hydro_42  31 efaWaklePeegkydFewLdevldllekag....ikviLatptaapPaWlvkkyPeilavdadgskrkf 95 
                     ++ W+  eP+ ++y+++ +d +l  + k+     + +   ++ +  P+Wl+++  ++ +v++dg +r+ 
      KOO20989.1  82 VVRWSEFEPKPDEYNWAAFDSLLLDVTKRSkpfaVGITFLSGPNYYPQWLFESPFNVTKVTEDGPVRSR 150
                     467***************9998766665432222667777889999****************9988765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1142 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       362  (0.0201908); expected 358.6 (0.02)
Passed bias filter:                      271  (0.0151152); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.67u 0.29s 00:00:00.96 Elapsed: 00:00:00.43
# Mc/sec: 7915.85
//
Query:       KOO20990.1  [L=589]
Description: isoform b [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    8.8e-12   45.1   0.2    1.1e-10   41.5   0.2    2.1  1  Glyco_transf_8   Glycosyl transferase family 8
     0.0015   18.5   0.0     0.0028   17.6   0.0    1.4  1  Nucleotid_trans  Nucleotide-diphospho-sugar transferase
  ------ inclusion threshold ------
      0.067   12.5   0.0       0.11   11.9   0.0    1.2  1  Mannosyl_trans3  Mannosyltransferase putative


Domain annotation for each model (and alignments):
>> Glyco_transf_8  Glycosyl transferase family 8
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.5   0.2   1.9e-14   1.1e-10      80     253 ..     378     533 ..     330     535 .. 0.88

  Alignments for each domain:
  == domain 1  score: 41.5 bits;  conditional E-value: 1.9e-14
  Glyco_transf_8  80 lrspkylsllnylRlylpelfpkldkilylDaDvvvqgdlseLwdldlkgkvlaavedkrfkkylnksepliaenfkpeacyFnaGvllfdldew 174
                     ++++++  l +  +++++ l  +l+k+l+lDaD++v + +++L d + +  ++aa  +                    +a+ Fn+Gv+++ + + 
      KOO20990.1 378 YQQKRAKWLSTCTKFHAWAL-TSLRKVLFLDADTLVLKPVDALVDHPSA--FAAAPDT-------------------FPADQFNSGVMVITPSA- 449
                     5667777777889*******.***********************99999..6666555...................699***********976. PP

  Glyco_transf_8 175 rkenitetlikwlnlnekrtllklgdqdilnivfk.........gkvkeldkkynvlglgy.eqskkskkeitenaaviHyiG.paKPWl 253
                        +++e l  w + n++    + gdq++ln +f              +l+  +nv    y + ++ +k + ++++a++H++G ++KPW 
      KOO20990.1 450 ---SVFEALKAWNRVNGT---AEGGDQCLLNDFFGewfyaawddATNGRLPWIFNVGAAHYpQYKTLTKMQSRDEPAIVHFVGgESKPWG 533
                     ...89*******999999...99***********999999999878889*******99999855555556666********9989****6 PP

>> Nucleotid_trans  Nucleotide-diphospho-sugar transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.6   0.0   4.8e-07    0.0028      98     200 ..     417     525 ..     397     531 .. 0.77

  Alignments for each domain:
  == domain 1  score: 17.6 bits;  conditional E-value: 4.8e-07
  Nucleotid_trans  98 Dsldgttadelknli........NsGfffvrateatkallkkwaeelasesglwDqdvfnlllregaake.sglkvrvLdtalfvngkgyfvqv 182
                      D l ++++  + + +        NsG++++ ++ +  + lk w++   + +g  Dq  +n++  e++ ++  +++ + L+ + f+ g   + q 
       KOO20990.1 417 DALVDHPS-AFAAAPdtfpadqfNSGVMVITPSASVFEALKAWNRVNGTAEG-GDQCLLNDFFGEWFYAAwDDATNGRLP-WIFNVGAAHYPQY 507
                      33333322.22222233344444*********************99999855.8************98889999999998.8998899999999 PP

  Nucleotid_trans 183 rdeeevktkkkpvavhan 200
                      +  ++++ + +p++vh+ 
       KOO20990.1 508 KTLTKMQSRDEPAIVHFV 525
                      99999999********85 PP

>> Mannosyl_trans3  Mannosyltransferase putative
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   1.8e-05      0.11      80     115 ..     387     422 ..     358     424 .. 0.85

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 1.8e-05
  Mannosyl_trans3  80 gfqnKalAllfssFeevllLDaDnvplknpdklFes 115
                      +   K+ A  ++s ++vl+LDaD+++lk++d l ++
       KOO20990.1 387 STCTKFHAWALTSLRKVLFLDADTLVLKPVDALVDH 422
                      556799999*********************998765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (589 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       299  (0.0166769); expected 358.6 (0.02)
Passed bias filter:                      276  (0.0153941); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.52u 0.22s 00:00:00.74 Elapsed: 00:00:00.38
# Mc/sec: 4647.20
//
Query:       KOO20991.1  [L=628]
Description: hypothetical protein Ctob_000043 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.8e-09   36.9   0.4    8.9e-08   32.0   0.5    2.8  2  Glyco_transf_8  Glycosyl transferase family 8


Domain annotation for each model (and alignments):
>> Glyco_transf_8  Glycosyl transferase family 8
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.0   0.5     5e-12   8.9e-08      88     251 ..     116     350 ..     108     353 .. 0.80
   2 ?   -4.1   0.0       0.5   8.9e+03     119     137 ..     486     503 ..     484     517 .. 0.71

  Alignments for each domain:
  == domain 1  score: 32.0 bits;  conditional E-value: 5e-12
  Glyco_transf_8  88 llnylRlylpel..fpkldkilylDaDvvvqgdlseLwdldlk.gkvlaaved.......................................... 137
                     + n+lR+ylp l  f +ld +   D+D+vvq+++s+L +++++ g ++aa                                             
      KOO20991.1 116 PFNLLRFYLPYLgpFRELDSLFLCDDDIVVQKSISML-EVPMGdGPIIAATCNgwlwaedcmrnepyyngkgwldypatylgkdkahgysgctrt 209
                     679********95559******************976.9999988888888889***************************************** PP

  Glyco_transf_8 138 ...........krfkkyl..nksepliaenfkpeacyFnaGvllfdldewrkenitetlikwlnlnekrtllklgdqdilnivfk.......... 209
                                  f+++   ++++ + +    + +  +n+G+  ++l+ewr++n+t +  ++++ n + +l+   ++ +++ + +          
      KOO20991.1 210 aaesgnlicqkDEFAETVlrWSKDIQGKGLVAADQPRWNFGLSRVNLTEWRAQNMTHVFDNYMRANYEAKLIPETSLAFGLGIPYfafadkimcw 304
                     *****99988833333321144444445556677889*****************************999********999988774444444333 PP

  Glyco_transf_8 210 gkvkeldkkynvlglgy.............eqskkskkeitenaaviHyiGpaKP 251
                     ++v   +                       + +  +  +   +a+v+H++G+ KP
      KOO20991.1 305 NDVVGDP---------AfvdglgyiskadlKANHLNASKLLGEATVLHWSGRNKP 350
                     2222222.........1333333366888877777777788999********999 PP

  == domain 2  score: -4.1 bits;  conditional E-value: 0.5
  Glyco_transf_8 119 lseLwdldlkgkvlaaved 137
                     +++Lw+l+ + +v+ + +d
      KOO20991.1 486 IQALWNLYEQ-NVFSMATD 503
                     7899999988.55555544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (628 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       303  (0.0169); expected 358.6 (0.02)
Passed bias filter:                      287  (0.0160076); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.51u 0.26s 00:00:00.77 Elapsed: 00:00:00.39
# Mc/sec: 4804.54
//
Query:       KOO20992.1  [L=606]
Description: glucan -beta [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.2e-07   30.6   0.6    3.8e-07   29.8   0.6    1.3  1  Cellulase     Cellulase (glycosyl hydrolase family 5)
    9.6e-05   21.9   0.1    0.00052   19.5   0.0    2.2  3  AP_endonuc_2  Xylose isomerase-like TIM barrel


Domain annotation for each model (and alignments):
>> Cellulase  Cellulase (glycosyl hydrolase family 5)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.8   0.6   4.2e-11   3.8e-07      14     246 ..     126     384 ..     108     403 .. 0.69

  Alignments for each domain:
  == domain 1  score: 29.8 bits;  conditional E-value: 4.2e-11
                 CETTSCGGSHHHHHHHHHHHT-SEEEEEEE.CTGGTTSSTTTGCTHHHHHHHHHHHHHHHHTT-EEEEEEESS.......................... CS
   Cellulase  14 stswgnpyttkalidevkdagfntvRlpvs.wgelvenapdykvdenslerveevvkyakenglyvildiHse.......................... 85 
                 +++w      ++  +++++ag n++R+pv  w   v+ +p +   + +le+++ +++++ + +l+ ++d+H                            
  KOO20992.1 126 RLHWAAW-VRDEDVKAIAAAGANVIRVPVPdW-IFVPREPFIGCWDGALEELNRLIELCRKYNLKMLIDVHTApgsqngfdnsgrtwnlkwdldpatgl 222
                 5555443.45678899*************966.55555555556667*************************966666666666555555555555555 PP

                 ..........TTTCSSSSTTTTHHHHHHH..................HHH......HHHHHHHHHTTTTTTEEEESSSS--STTCTCCTCHHHTTHHHH CS
   Cellulase  86 ..........egwltkadgnssedtaeef..................fkk......lwtqiAerykkndevvifelmNEPhgnntgaewtseeadevka 150
                           +                                      +      ++  i +ry++++ +++ e +NEP    t+        + +k+
  KOO20992.1 223 pvfnhwgvrsA-----------------DwigtwdlakwtyggeynyE-HinhslsVLDVIIDRYQQEPVIWGLEPLNEPWYF-TP-------IEPLKQ 295
                 55544444441.................03333333333333333320.12223336888*****7777788999*****993.34.......599*** PP

                 HHHHHHHHHHHHTTS.SEEEEECHHHHTBHHHHHCT....SGSSSSTTEEEEEEEETTTHHHTGCGSHSCTHHHHHHHHHHHHHHHHHHTTSEEEEEEE CS
   Cellulase 151 yaeeaikaIRavgpn.rliivegnswsgnldgavln....dPndsqdnliysvHfYgpsdfaqtefgkdltdktnlaqrledaakylvekgipviigEf 244
                 ++   ++ +Ra  p+  +++ ++  + g +     +     P     n +++ H+Y  +++ q+++ +  ++   l++ l d+ + +++  +p+i gE+
  KOO20992.1 296 FYWDGYQKVRARVPSwKYVMQDS--FRGYPAL-WWDfmrgCP-----NKAMDTHTYMAWEYDQEAS-FYHNKACGLDGILHDMET-FLD--MPMITGEW 382
                 *************9955666665..7777776.444333456.....5599**********99888.555555555555555544.444..79999999 PP

                 ES CS
   Cellulase 245 Gg 246
                  +
  KOO20992.1 383 SL 384
                 86 PP

>> AP_endonuc_2  Xylose isomerase-like TIM barrel
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.5   0.0   5.8e-08   0.00052      75     141 ..     137     203 ..      75     217 .. 0.84
   2 ?   -1.8   0.0      0.19   1.7e+03      99     140 ..     247     289 ..     227     306 .. 0.77
   3 ?   -2.3   0.0      0.28   2.5e+03     175     209 ..     535     596 ..     530     597 .. 0.69

  Alignments for each domain:
  == domain 1  score: 19.5 bits;  conditional E-value: 5.8e-08
                   HHHHHHHHTBSEEEEEBCCGBCTTTSGHHHHHHHHHHHHHHHHHHHHHHTSEEEEE--TTTTSSSTC CS
  AP_endonuc_2  75 aielaaaLGapllvlhpGtagagpkgseeeawerlaeslneladyaekegvklalEtlagsgvelgd 141
                    +++ aa Ga ++ +++ ++ + p+++   +w+ + e ln+l++ ++k++ k ++  ++ +g+++g 
    KOO20992.1 137 DVKAIAAAGANVIRVPVPDWIFVPREPFIGCWDGALEELNRLIELCRKYNLKMLIDVHTAPGSQNGF 203
                   57888999*****************************************************999886 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 0.19
                   TSGHH.HHHHHHHHHHHHHHHHHHHHTSEEEEE--TTTTSSST CS
  AP_endonuc_2  99 kgsee.eawerlaeslneladyaekegvklalEtlagsgvelg 140
                   +g+++ e +++  ++l+ ++d  ++e v  +lE+l+++  ++ 
    KOO20992.1 247 GGEYNyEHINHSLSVLDVIIDRYQQEPVIWGLEPLNEPWYFTP 289
                   4444457788889999999999999999999999999876655 PP

  == domain 3  score: -2.3 bits;  conditional E-value: 0.28
                   HHHHHHGGEEEEEE.EESS...........................TTTTSSTTEESTTSSS CS
  AP_endonuc_2 175 alraladrikhvHikDakg...........................dlgagrdrhvpigeGe 209
                   +l a+a+r+++ H+  + g                            ++a+r  ++ ++eG+
    KOO20992.1 535 QLLAYAPRLAAAHVEGSSGgsvafasypsvrvafgalavllgagvlLERARRKSRADPNEGD 596
                   56689999999999888777777777777666666666666666666666666666666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (606 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       389  (0.0216967); expected 358.6 (0.02)
Passed bias filter:                      321  (0.017904); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.53u 0.25s 00:00:00.78 Elapsed: 00:00:00.40
# Mc/sec: 4498.56
//
Query:       KOO20993.1  [L=290]
Description: morn repeat protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.3e-63  207.2  74.9    8.6e-08   31.6   1.3   10.8 11  MORN       MORN repeat
      0.003   17.9  28.6        0.7   10.3   0.6    6.2  7  DUF3048_C  Protein of unknown function (DUF3048) C-terminal d
  ------ inclusion threshold ------
       0.35   10.7   5.5         25    4.8   0.2    4.3  4  DUF448     Protein of unknown function (DUF448)


Domain annotation for each model (and alignments):
>> MORN  MORN repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.0      0.32   1.9e+03      16      22 ..       1       7 [.       1       8 [. 0.87
   2 !   22.7   2.7     1e-08     6e-05       1      22 [.       9      30 ..       9      31 .. 0.95
   3 !   27.1   0.2   4.1e-10   2.5e-06       1      21 [.      32      52 ..      32      54 .. 0.91
   4 !   31.6   1.3   1.4e-11   8.6e-08       1      23 []      55      77 ..      55      77 .. 0.95
   5 !   27.4   2.6   3.2e-10   1.9e-06       1      22 [.      78      99 ..      78     100 .. 0.95
   6 !   23.0   0.7   8.3e-09     5e-05       2      23 .]     102     123 ..     101     123 .. 0.95
   7 !   30.3   1.7   3.9e-11   2.3e-07       1      23 []     124     146 ..     124     146 .. 0.97
   8 !   30.2   0.9   4.3e-11   2.5e-07       1      23 []     147     169 ..     147     169 .. 0.97
   9 !   22.2   1.2   1.5e-08   8.9e-05       2      21 ..     171     190 ..     170     192 .. 0.93
  10 !   31.0   1.3   2.2e-11   1.3e-07       1      23 []     204     226 ..     204     226 .. 0.97
  11 !    9.0   0.4   0.00024       1.4       1      12 [.     227     238 ..     227     239 .. 0.92

  Alignments for each domain:
  == domain 1  score: -0.9 bits;  conditional E-value: 0.32
        MORN 16 ytwpdGd 22
                +t+++Gd
  KOO20993.1  1 MTFANGD 7 
                69****8 PP

  == domain 2  score: 22.7 bits;  conditional E-value: 1e-08
        MORN  1 YeGeWknGkrhGkGvytwpdGd 22
                Y GeWk+Gk +G G yt ++G 
  KOO20993.1  9 YNGEWKGGKQEGRGMYTLANGH 30
                99*******************7 PP

  == domain 3  score: 27.1 bits;  conditional E-value: 4.1e-10
        MORN  1 YeGeWknGkrhGkGvytwpdG 21
                YeGeW+++krhG G++t + G
  KOO20993.1 32 YEGEWRENKRHGRGKMTLSRG 52
                ****************98766 PP

  == domain 4  score: 31.6 bits;  conditional E-value: 1.4e-11
        MORN  1 YeGeWknGkrhGkGvytwpdGdr 23
                ++GeWk+G  +G G+yt+pdGd+
  KOO20993.1 55 FDGEWKDGEQEGRGKYTFPDGDV 77
                69*******************96 PP

  == domain 5  score: 27.4 bits;  conditional E-value: 3.2e-10
        MORN  1 YeGeWknGkrhGkGvytwpdGd 22
                +eG+Wk+Gk +G G+yt+++G 
  KOO20993.1 78 FEGNWKGGKQEGRGKYTYANGA 99
                79*******************6 PP

  == domain 6  score: 23.0 bits;  conditional E-value: 8.3e-09
        MORN   2 eGeWknGkrhGkGvytwpdGdr 23 
                 eGeWk G ++G G+ t+++Gd+
  KOO20993.1 102 EGEWKSGSMEGRGKTTYANGDV 123
                 9*******************96 PP

  == domain 7  score: 30.3 bits;  conditional E-value: 3.9e-11
        MORN   1 YeGeWknGkrhGkGvytwpdGdr 23 
                 Y+GeWk+G r+G G++t+++Gd+
  KOO20993.1 124 YSGEWKGGARNGRGKMTYANGDV 146
                 9********************96 PP

  == domain 8  score: 30.2 bits;  conditional E-value: 4.3e-11
        MORN   1 YeGeWknGkrhGkGvytwpdGdr 23 
                 Y+GeWknG  +G G++t+++G++
  KOO20993.1 147 YDGEWKNGEQEGRGKMTFASGNV 169
                 9********************95 PP

  == domain 9  score: 22.2 bits;  conditional E-value: 1.5e-08
        MORN   2 eGeWknGkrhGkGvytwpdG 21 
                  GeWk+Gk +G G++t+++G
  KOO20993.1 171 NGEWKGGKQEGRGKMTYSSG 190
                 5******************9 PP

  == domain 10  score: 31.0 bits;  conditional E-value: 2.2e-11
        MORN   1 YeGeWknGkrhGkGvytwpdGdr 23 
                 YeGeW  G+ hG G++t+++G++
  KOO20993.1 204 YEGEWACGMQHGRGKMTYANGNV 226
                 *********************95 PP

  == domain 11  score: 9.0 bits;  conditional E-value: 0.00024
        MORN   1 YeGeWknGkrhG 12 
                 ++GeW +Gkr+G
  KOO20993.1 227 FDGEWTGGKREG 238
                 69*********9 PP

>> DUF3048_C  Protein of unknown function (DUF3048) C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.3   0.6   0.00012       0.7      67     100 ..      19      53 ..       1      58 [. 0.75
   2 !    9.5   0.8   0.00021       1.3      68     100 ..      66      99 ..      52     102 .. 0.81
   3 !    5.6   0.8    0.0033        20      70      99 ..      92     121 ..      84     123 .. 0.73
   4 !    4.9   4.0    0.0054        32      66     100 ..     135     168 ..      99     171 .. 0.62
   5 !    5.7   1.6    0.0032        19      65     110 ..     157     199 ..     147     200 .. 0.74
   6 ?    2.4   0.9     0.033     2e+02      73     101 ..     198     226 ..     175     231 .. 0.72
   7 ?    2.3   0.2     0.036   2.1e+02      76     101 ..     201     226 ..     198     243 .. 0.62

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.00012
                 -EE.EEEEETTEEEEEEEEE..ETTEEEEE.ETTE CS
   DUF3048_C  67 sge.gyvftnGkaieitWskesedgptkyydedGk 100
                 +g+ +y + nG+++e++W+++++ g+ k++ + G+
  KOO20993.1  19 EGRgMYTLANGHVYEGEWRENKRHGRGKMTLSRGA 53 
                 333267799************99999888876665 PP

  == domain 2  score: 9.5 bits;  conditional E-value: 0.00021
                 EE.EEEEETTEEEEEEEEE..ETTEEEEE.ETTE CS
   DUF3048_C  68 ge.gyvftnGkaieitWskesedgptkyydedGk 100
                 g+  y f +G + e++W+  +++g+ ky++++G+
  KOO20993.1  66 GRgKYTFPDGDVFEGNWKGGKQEGRGKYTYANGA 99 
                 33147799*********************99885 PP

  == domain 3  score: 5.6 bits;  conditional E-value: 0.0033
                 EEEEETTEEEEEEEEE..ETTEEEEE.ETT CS
   DUF3048_C  70 gyvftnGkaieitWskesedgptkyydedG 99 
                  y   nG + e++W+  s +g+ k ++++G
  KOO20993.1  92 KYTYANGAVHEGEWKSGSMEGRGKTTYANG 121
                 355689***********9997777666666 PP

  == domain 4  score: 4.9 bits;  conditional E-value: 0.0054
                 S-EEEEEEETTEEEEEEEEE..ETTEEEEE.ETTE CS
   DUF3048_C  66 gsgegyvftnGkaieitWskesedgptkyydedGk 100
                 g g++    nG +++++W++ +++g+ k++ ++G+
  KOO20993.1 135 GRGKM-TYANGDVYDGEWKNGEQEGRGKMTFASGN 168
                 33333.34577888888888877777776665665 PP

  == domain 5  score: 5.7 bits;  conditional E-value: 0.0032
                 SS-EEEEEEETTEEEEEEEEE..ETTEEEEE.ETTEE--B-SS-EE CS
   DUF3048_C  65 tgsgegyvftnGkaieitWskesedgptkyydedGkeiklnpGktw 110
                 +g g+ + f  G++ +++W+  +++g+ k+++++G+   + +G+++
  KOO20993.1 157 EGRGK-MTFASGNVFNGEWKGGKQEGRGKMTYSSGAA--VYDGNVY 199
                 34443.45788**************999999988984..4556555 PP

  == domain 6  score: 2.4 bits;  conditional E-value: 0.033
                 EETTEEEEEEEEE..ETTEEEEE.ETTEE CS
   DUF3048_C  73 ftnGkaieitWskesedgptkyydedGke 101
                 +  G+++e++W    + g+ k+++++G+ 
  KOO20993.1 198 VYVGNVYEGEWACGMQHGRGKMTYANGNV 226
                 4459999****999999999999988885 PP

  == domain 7  score: 2.3 bits;  conditional E-value: 0.036
                 TEEEEEEEEE..ETTEEEEE.ETTEE CS
   DUF3048_C  76 GkaieitWskesedgptkyydedGke 101
                 G+++e++W    + g+ k+++++G+ 
  KOO20993.1 201 GNVYEGEWACGMQHGRGKMTYANGNV 226
                 55666666666666555555555553 PP

>> DUF448  Protein of unknown function (DUF448)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.8   0.2    0.0042        25      32      46 ..      16      30 ..      14      44 .. 0.81
   2 ?    2.8   0.1     0.018   1.1e+02      31      49 ..      61      79 ..      38      86 .. 0.85
   3 ?    2.5   0.2     0.023   1.4e+02      32      59 ..      85     112 ..      83     125 .. 0.75
   4 ?   -1.7   0.0      0.46   2.7e+03      26      44 ..     250     268 ..     244     273 .. 0.75

  Alignments for each domain:
  == domain 1  score: 4.8 bits;  conditional E-value: 0.0042
      DUF448 32 gklpGRGaYvcpsee 46
                gk++GRG+Y  ++  
  KOO20993.1 16 GKQEGRGMYTLANGH 30
                899******988765 PP

  == domain 2  score: 2.8 bits;  conditional E-value: 0.018
      DUF448 31 tgklpGRGaYvcpseecle 49
                +g+++GRG Y  p+ +++e
  KOO20993.1 61 DGEQEGRGKYTFPDGDVFE 79
                5889*******99988877 PP

  == domain 3  score: 2.5 bits;  conditional E-value: 0.023
      DUF448  32 gklpGRGaYvcpseeclekaikkkaler 59 
                 gk++GRG Y  ++ ++ e   k+ ++e 
  KOO20993.1  85 GKQEGRGKYTYANGAVHEGEWKSGSMEG 112
                 899******9999888887777776665 PP

  == domain 4  score: -1.7 bits;  conditional E-value: 0.46
      DUF448  26 vvlDltgklpGRGaYvcps 44 
                  vl ++++  GR+  ++ s
  KOO20993.1 250 AVLEPEKQRAGRSLVISHS 268
                 5788889999999877766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (290 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       234  (0.0130515); expected 358.6 (0.02)
Passed bias filter:                      142  (0.00792013); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.43u 0.24s 00:00:00.67 Elapsed: 00:00:00.39
# Mc/sec: 2235.12
//
Query:       KOO20994.1  [L=261]
Description: hypothetical protein Ctob_001174 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0052   17.2   0.0        2.3    8.8   0.0    2.9  2  EF-hand_7  EF-hand domain pair
  ------ inclusion threshold ------
      0.048   14.0   0.1        1.3    9.4   0.0    3.2  4  EF-hand_9  EF-hand domain
       0.19   11.8   0.0        6.8    6.9   0.0    3.1  3  EF-hand_6  EF-hand domain


Domain annotation for each model (and alignments):
>> EF-hand_7  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.3   0.0    0.0045        27      20      70 ..      94     138 ..      87     139 .. 0.74
   2 !    8.8   0.0   0.00038       2.3       1      34 [.     148     178 ..     148     236 .. 0.71

  Alignments for each domain:
  == domain 1  score: 5.3 bits;  conditional E-value: 0.0045
   EF-hand_7  20 dkeellrllrkifqgagegsklsdeelellfkefDtdkdGvisfdEFlkly 70 
                 + +ellrllr +    + + +++    + ++  +D   ++ i+fdEF  ++
  KOO20994.1  94 TGAELLRLLRLL----CGDCPIDV--SRSVLVLIDRAESDPITFDEFSGAV 138
                 566777777744....44444443..45899999*************8776 PP

  == domain 2  score: 8.8 bits;  conditional E-value: 0.00038
   EF-hand_7   1 eeklkeaFkelDtdgdgyldkeellrllrkifqg 34 
                 +++ ++ F+  D  ++g + ++ l+ ++r+   g
  KOO20994.1 148 FKRARTLFDTCDPLHTGTIPRTTLQLVIRQ---G 178
                 578899*******************56654...3 PP

>> EF-hand_9  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.0      0.37   2.2e+03      44      59 ..       3      18 ..       2      27 .. 0.81
   2 ?   -0.9   0.0      0.35   2.1e+03      17      46 ..      39      68 ..      37      77 .. 0.69
   3 ?    9.4   0.0   0.00022       1.3       2      33 ..     153     184 ..     152     193 .. 0.88
   4 ?   -2.2   0.0      0.93   5.5e+03      51      60 ..     224     233 ..     220     235 .. 0.76

  Alignments for each domain:
  == domain 1  score: -0.9 bits;  conditional E-value: 0.37
   EF-hand_9 44 lDPdgedasvdldtfl 59
                +DP   da+ +ld + 
  KOO20994.1  3 IDPTSLDAEEYLDRYG 18
                5999999999999985 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 0.35
   EF-hand_9 17 vsrlidyLravtaqdpeeseLeelakelDP 46
                ++ + +y r vt+ +++ ++   + +++ P
  KOO20994.1 39 IAFISKYFRTVTQGSSPLLRAYRYIRLAHP 68
                666889999999966655566666666665 PP

  == domain 3  score: 9.4 bits;  conditional E-value: 0.00022
   EF-hand_9   2 tvFevcDtqktGrVpvsrlidyLravtaqdpe 33 
                 t+F+ cD+  tG++p + l  + r+ ++ +p+
  KOO20994.1 153 TLFDTCDPLHTGTIPRTTLQLVIRQGASATPS 184
                 78**********************99998876 PP

  == domain 4  score: -2.2 bits;  conditional E-value: 0.93
   EF-hand_9  51 asvdldtflr 60 
                  sv+ld fl+
  KOO20994.1 224 SSVELDEFLE 233
                 6899999985 PP

>> EF-hand_6  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.3   0.0      0.23   1.4e+03      17      27 ..      93     103 ..      77     107 .. 0.84
   2 ?   -0.1   0.0       0.2   1.2e+03      10      27 ..     122     139 ..     115     142 .. 0.74
   3 ?    6.9   0.0    0.0011       6.8       2      28 ..     151     177 ..     150     189 .. 0.89

  Alignments for each domain:
  == domain 1  score: -0.3 bits;  conditional E-value: 0.23
   EF-hand_6  17 idaeElrkalr 27 
                 ++ +El ++lr
  KOO20994.1  93 VTGAELLRLLR 103
                 7999***9999 PP

  == domain 2  score: -0.1 bits;  conditional E-value: 0.2
   EF-hand_6  10 DkdgdGkidaeElrkalr 27 
                 D+  +  i+++E+  a r
  KOO20994.1 122 DRAESDPITFDEFSGAVR 139
                 55555569****988877 PP

  == domain 3  score: 6.9 bits;  conditional E-value: 0.0011
   EF-hand_6   2 lreaFklfDkdgdGkidaeElrkalrk 28 
                  r +F+  D  ++G+i +  l+ ++r+
  KOO20994.1 151 ARTLFDTCDPLHTGTIPRTTLQLVIRQ 177
                 5889*******************9996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (261 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       382  (0.0213063); expected 358.6 (0.02)
Passed bias filter:                      329  (0.0183502); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.44u 0.24s 00:00:00.68 Elapsed: 00:00:00.40
# Mc/sec: 1936.01
//
Query:       KOO20995.1  [L=368]
Description: protein kinase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    9.2e-31  107.2   0.0    1.2e-30  106.8   0.0    1.1  1  Pkinase      Protein kinase domain
    2.5e-20   72.9   0.0    3.6e-20   72.3   0.0    1.2  1  Pkinase_Tyr  Protein tyrosine kinase
  ------ inclusion threshold ------
      0.011   15.4   0.0      0.017   14.7   0.0    1.2  1  RIO1         RIO1 family
      0.048   13.6   0.1      0.076   12.9   0.1    1.2  1  APH          Phosphotransferase enzyme family


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  106.8   0.0   2.7e-34   1.2e-30       5     169 ..     174     345 ..     170     351 .. 0.91

  Alignments for each domain:
  == domain 1  score: 106.8 bits;  conditional E-value: 2.7e-34
                 EEEEEESSEEEEEEEETTTTEEEEEEEEECHCHCHHHHHHHHHHHHHHHHHSCTTB--EEEEEEESSEEEEEEE--TTEBHHHHHH..........HHS CS
     Pkinase   5 eklGeGsfGkVykaveketgkivAvKkikkekakkkkekkvlrEikilkklkhpnivrlyevfeekdelylvleyveggeladlle..........rkg 93 
                  ++G+Gs++ V  a+    g+ vAvK++++++ + +  + +l+E + l +++hp+ivr+++ +  +  ++lv+e +e  ++++l++          r  
  KOO20995.1 174 VRIGQGSSSIVSAAT--LYGELVAVKQMEVSRLTREFASMFLTEAECLSHCRHPHIVRFVGGCVAPPLVCLVMEQCE-SSVHRLVHprrsaaarhmRLA 269
                 68************9..8***********************************************************.558888887777777443333 PP

                 S--HHHHHHHHHHHHHHHHHHH.HTTEE-SS-SGGGEEEETTTEEEE-SGTTSEESSSSCSBCTTTSCGGGS-HHHH CS
     Pkinase  94 slseeeakkiakqilegleylH.skgiiHrDlKpeNiLidekgelKitDFGlakelessskltsfvgtseYlAPEvl 169
                  l+++ + ++++ +++g+++lH  +gi H DlKp N+L+   + +K++DFG ++ l+++ +   f +t  Y+APE+l
  KOO20995.1 270 PLPDKVVCELLRGVVSGMAFLHdVMGITHGDLKPLNMLLR-GNCVKLCDFGSSRLLQHDLSELAFSATLPYMAPELL 345
                 46777999**************7799**************.667*******************************98 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   72.3   0.0     8e-24   3.6e-20       2     178 ..     171     346 ..     170     350 .. 0.85

  Alignments for each domain:
  == domain 1  score: 72.3 bits;  conditional E-value: 8e-24
                  EEEEEEEEESSEEEEEEEEETTTTSSEEEEEEEEESTTSSHHH.HHHHHHHHHHHHTS-BTTB--EEEEEESSSSEEEEEE--TTEBHHHHHHHT... CS
  Pkinase_Tyr   2 elgkklGeGafGkVvegtlkgekekkevkVavKtlkeeateee.keelleeakimkklkhpnivkllgvctkeepllivteyvkgGdLlkfLrkk... 95 
                  ++g ++G+G+ + V  +tl+       + VavK+++ +   +e  +++l+ea+++++++hp+iv+++g c+    +++v+e +++  ++  ++ +   
   KOO20995.1 171 RFGVRIGQGSSSIVSAATLY------GELVAVKQMEVSRLTREfASMFLTEAECLSHCRHPHIVRFVGGCVAPPLVCLVMEQCESS-VHRLVHPRrsa 261
                  67889***************......899******8666555548999***********************9999********975.55555555567 PP

                  .....CTTTSBHHHHHHHHHHHHHHHHHHHHTT.EEEST-SGGGEEEEETTEEEE-STTTHEETTTSSEEEETTSSTSGGGGS-HHHHH CS
  Pkinase_Tyr  96 .....ekekltlkdllsfalqvAkGmeyLeskk.lvHrdlaarNvLlsenkvvkisDfGLardiekddeyvkkeeaklpvkWmapEslk 178
                       + ++l  k ++++   v +Gm++L++   + H dl   N+Ll+ +++vk++DfG +r +   ++  ++      + +mapE l 
   KOO20995.1 262 aarhmRLAPLPDKVVCELLRGVVSGMAFLHDVMgITHGDLKPLNMLLR-GNCVKLCDFGSSRLL---QHDLSELAFSATLPYMAPELLV 346
                  88777777788888999*************965389***********9.99*************...444555666778889****985 PP

>> RIO1  RIO1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.7   0.0   3.8e-06     0.017      93     161 ..     261     330 ..     241     335 .. 0.81

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 3.8e-06
                 EEGGBHHHCG-.HHHHHHHHHHHHHHHHHHHHTSTEEESS-STTSEEEETTEEEE--GTTEEETTSTTHH CS
        RIO1  93 vaapklkdvee.eeeaeelyeevleemrklykeaglvHaDLSeyNvlvdedkvviIDvsQaveldhpnal 161
                  aa +++ ++  ++   el++ v++ m+ l   +g+ H+DL   N+l+  + v + D++ +  l+h+ ++
  KOO20995.1 261 AAARHMRLAPLpDKVVCELLRGVVSGMAFLHDVMGITHGDLKPLNMLLRGNCVKLCDFGSSRLLQHDLSE 330
                 4555555555336777889999************************************988888887665 PP

>> APH  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.1   1.7e-05     0.076     129     194 ..     243     319 ..     234     338 .. 0.69

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 1.7e-05
                 HHCHHHCCCGCCTCCHHHHHHHH......HHHHHHHH--S.................SS-EEEE-SS-SGGGEEEC..TTEEEEE---T CS
         APH 129 lesatarllaselldlleeleeq......vlaalaallpg.................elptvllHgDlhpgNllvdpddgrvtGviDfe 194
                 +++++  ++++++++++ ++++                                   ++ ++++HgDl+p N+l++ ++     + Df+
  KOO20995.1 243 VMEQCESSVHRLVHPRRSAAARHmrlaplP---------DkvvcellrgvvsgmaflHDVMGITHGDLKPLNMLLR-GNCVK--LCDFG 319
                 567777777777777322222223333330.........24555555555559999999****************9.44433..66666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (368 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       306  (0.0170673); expected 358.6 (0.02)
Passed bias filter:                      243  (0.0135535); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.47u 0.24s 00:00:00.71 Elapsed: 00:00:00.43
# Mc/sec: 2598.34
//
Query:       KOO20996.1  [L=351]
Description: hypothetical protein Ctob_001176 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.2e-09   35.3   1.4      5e-05   22.6   0.0    2.4  2  EF-hand_1  EF hand
    1.1e-08   34.4   2.0    0.00023   20.9   0.1    2.4  2  EF-hand_6  EF-hand domain
    1.2e-08   35.3   0.1    2.6e-08   34.2   0.1    1.6  1  EF-hand_7  EF-hand domain pair
    1.3e-05   24.5   2.2      0.038   13.5   0.3    2.4  2  EF-hand_5  EF hand
    3.2e-05   23.7   0.0    6.2e-05   22.8   0.0    1.5  1  EF-hand_8  EF-hand domain pair


Domain annotation for each model (and alignments):
>> EF-hand_1  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.6   0.3   4.5e-05      0.16       3      29 .]      37      63 ..      35      63 .. 0.90
   2 !   22.6   0.0   1.4e-08     5e-05       1      26 [.      71      96 ..      71      98 .. 0.95

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 4.5e-05
                HHHHHHHTTTSSSEEEHHHHHHHHHHH CS
   EF-hand_1  3 keiFrefDkDgdGkIdfeEfkellkkl 29
                 ++Fr++D++ dG I++ E+k +l kl
  KOO20996.1 37 LDFFRDADTNFDGCISKGEMKFALHKL 63
                579******************999875 PP

  == domain 2  score: 22.6 bits;  conditional E-value: 1.4e-08
                HHHHHHHHHTTTSSSEEEHHHHHHHH CS
   EF-hand_1  1 elkeiFrefDkDgdGkIdfeEfkell 26
                e++++F+++D Dg+G ++f E++++l
  KOO20996.1 71 EVDQLFDMLDPDGNGVLEFGELQQAL 96
                799********************997 PP

>> EF-hand_6  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.7   0.4   2.6e-05     0.094       3      31 .]      37      64 ..      35      64 .. 0.91
   2 !   20.9   0.1   6.3e-08   0.00023       2      26 ..      72      96 ..      71     104 .. 0.92

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 2.6e-05
   EF-hand_6  3 reaFklfDkdgdGkidaeElrkalrkalg 31
                 ++F+  D++ dG+i++ E++ al  +lg
  KOO20996.1 37 LDFFRDADTNFDGCISKGEMKFALH-KLG 64
                689********************99.676 PP

  == domain 2  score: 20.9 bits;  conditional E-value: 6.3e-08
   EF-hand_6  2 lreaFklfDkdgdGkidaeElrkal 26
                ++++F+++D dg+G + + El++al
  KOO20996.1 72 VDQLFDMLDPDGNGVLEFGELQQAL 96
                6789*******************98 PP

>> EF-hand_7  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.2   0.1   7.2e-12   2.6e-08       6      69 ..      38      95 ..      34      97 .. 0.89

  Alignments for each domain:
  == domain 1  score: 34.2 bits;  conditional E-value: 7.2e-12
   EF-hand_7  6 eaFkelDtdgdgyldkeellrllrkifqgagegsklsdeelellfkefDtdkdGvisfdEFlkl 69
                + F+  Dt+ dg ++k e++ +l+        g + s+ e+++lf+++D d++Gv+ f E++++
  KOO20996.1 38 DFFRDADTNFDGCISKGEMKFALH------KLGINASPREVDQLFDMLDPDGNGVLEFGELQQA 95
                67****************997777......7777778889*********************997 PP

>> EF-hand_5  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.5   0.3   1.1e-05     0.038       3      22 ..      38      57 ..      36      60 .. 0.91
   2 !   10.5   0.1   9.2e-05      0.33       2      24 ..      73      96 ..      72      97 .. 0.87

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 1.1e-05
                HHHHHH-SS-SSCE-HHHHH CS
   EF-hand_5  3 dtFqaiDlNgDGkIskeELk 22
                d+F+ +D+N DG Isk E k
  KOO20996.1 38 DFFRDADTNFDGCISKGEMK 57
                79**************9976 PP

  == domain 2  score: 10.5 bits;  conditional E-value: 9.2e-05
                HHHHHHH-SS-SSCE-HHHHHH.H CS
   EF-hand_5  2 kdtFqaiDlNgDGkIskeELkt.l 24
                +++F+++D +g G + + EL++ l
  KOO20996.1 73 DQLFDMLDPDGNGVLEFGELQQaL 96
                459*****************9844 PP

>> EF-hand_8  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.8   0.0   1.7e-08   6.2e-05       2      47 ..      48      91 ..      48      97 .. 0.93

  Alignments for each domain:
  == domain 1  score: 22.8 bits;  conditional E-value: 1.7e-08
   EF-hand_8  2 kgkItreelrrilrilglkkglseeevdilfrefDtdgdGkisfeE 47
                +g+I++ e++ +l +lg++   s+ evd lf+ +D dg+G++ f E
  KOO20996.1 48 DGCISKGEMKFALHKLGIN--ASPREVDQLFDMLDPDGNGVLEFGE 91
                79***********888***..********************98866 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (351 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       672  (0.0374812); expected 358.6 (0.02)
Passed bias filter:                      327  (0.0182386); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.47u 0.25s 00:00:00.72 Elapsed: 00:00:00.41
# Mc/sec: 2546.62
//
Query:       KOO20997.1  [L=949]
Description: tubulin polyglutamylase ttll5 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    6.1e-73  245.5   0.0      1e-72  244.8   0.0    1.2  1  TTL             Tubulin-tyrosine ligase family
    4.9e-05   22.7   0.0       0.29   10.4   0.0    2.4  2  ATPgrasp_YheCD  YheC/D like ATP-grasp
  ------ inclusion threshold ------
      0.018   14.3   0.0        4.2    6.5   0.0    2.3  2  ATPgrasp_ST     Sugar-transfer associated ATP-grasp


Domain annotation for each model (and alignments):
>> TTL  Tubulin-tyrosine ligase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  244.8   0.0   1.7e-76     1e-72       7     259 ..     132     386 ..     128     387 .. 0.97

  Alignments for each domain:
  == domain 1  score: 244.8 bits;  conditional E-value: 1.7e-76
                 S-SS-SSS--EEEE--------------------...-------TTHHHHHHHTTTS--S-B----SS---XX------BSSTHHHHHHHH..SSS-EE CS
         TTL   7 kdqllnhfpnsseitrkdllvknlkrtkkklekk.lkflprtfvlpadlaefveeaekeesntwIvKpsasarGkgirvfnkledikkivsqsqkeplv 104
                 k+q++nhfp+  e+trkdll++ l   ++ ++++  +flp+tfvlpad++++  +  +e+  +wIvKp as+ G+gi ++++ ++++       +e++v
  KOO20997.1 132 KYQKVNHFPRTQELTRKDLLARTLGSLREAHGPSaCDFLPQTFVLPADYDALHAAMARERV-AWIVKPVASSCGRGISIVQQPHQLP-------HEDVV 222
                 59******************************9999***************9998888887.*************************.......8**** PP

                 EEB--SSB--BTTEEEEEEEEEEE-..TT-XXXXXXXXXXXXXXXXXX...XXXXXXXXXXXXXXXXXXXXX...XXXXXXXXXXXXXXXXXXXXXXXX CS
         TTL 105 vqkYierPLLidgrKFDlRlyvlvtsvnpLrvYvYkegllRfasvkYsp.svsdlddlevHLTNysiqkksk...slneesnekkgkkwslqelekyle 199
                 v++Yi +PLLidg KFDlR+yv vts+ pLr+YvY++gl+Rf+++ Y++  +   +++++HLTNysi+k+s    ++ + s+ ++g+kwsl++l+++l+
  KOO20997.1 223 VSRYIANPLLIDGFKFDLRIYVAVTSFYPLRCYVYEDGLARFSTERYQNsGSGGYKNVFMHLTNYSINKHSAhfvENTDASSDDHGNKWSLSALKRCLA 321
                 ************************************************9667899***************9999889999******************* PP

                 X..XXXXXXXXXXXXXXXXXXXXX....XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
         TTL 200 e..vrkeeiweeiesiiiktilaae...veasrlnvqrlkncfelyGvDilidenlkpwLlEvNa 259
                 +  v+   ++++i  +i +t++a e   v+a+r++   ++ cf+l+G+D+lid++lkpwLlEv a
  KOO20997.1 322 RngVDVPALFARIDALIVRTLIAVEpsvVSACRRYCGHKNCCFQLLGFDVLIDDALKPWLLEVKA 386
                 99*************************************************************86 PP

>> ATPgrasp_YheCD  YheC/D like ATP-grasp
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.7   0.0   7.7e-05      0.46      23      69 ..     164     212 ..     161     229 .. 0.83
   2 !   10.4   0.0   4.8e-05      0.29     203     228 ..     362     388 ..     339     409 .. 0.77

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 7.7e-05
  ATPgrasp_YheCD  23 pelrpyLPetelle.sledleemlekyks.vylKpanGskGkgilriek 69 
                     p++ ++LP+t  l+ ++++l++ +++++   ++Kp+++s G+gi  +++
      KOO20997.1 164 PSACDFLPQTFVLPaDYDALHAAMARERVaWIVKPVASSCGRGISIVQQ 212
                     677899****99986889999999888875799***********99998 PP

  == domain 2  score: 10.4 bits;  conditional E-value: 4.8e-05
  ATPgrasp_YheCD 203 r.lgElGlDlgidkegkvWllEvNskp 228
                       +  lG+D+ id+  k WllEv ++ 
      KOO20997.1 362 CcFQLLGFDVLIDDALKPWLLEVKAEM 388
                     446679****************98765 PP

>> ATPgrasp_ST  Sugar-transfer associated ATP-grasp
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.3   0.0    0.0017        10      50      81 ..     181     212 ..     154     221 .. 0.79
   2 ?    6.5   0.0    0.0007       4.2     236     265 ..     358     387 ..     347     400 .. 0.83

  Alignments for each domain:
  == domain 1  score: 5.3 bits;  conditional E-value: 0.0017
  ATPgrasp_ST  50 seleafvkeleegvviKpakgsgGkGilvite 81 
                  ++l+a +++     ++Kp+ +s G+Gi+++++
   KOO20997.1 181 DALHAAMARERVAWIVKPVASSCGRGISIVQQ 212
                  45555555444669***************976 PP

  == domain 2  score: 6.5 bits;  conditional E-value: 0.0007
  ATPgrasp_ST 236 aeklpglgylGwDivldeekgplllElNar 265
                   +k ++ ++lG D+ +d+  +p llE+ a+
   KOO20997.1 358 GHKNCCFQLLGFDVLIDDALKPWLLEVKAE 387
                  45578899******************9776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (949 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       472  (0.0263261); expected 358.6 (0.02)
Passed bias filter:                      293  (0.0163422); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.64u 0.28s 00:00:00.92 Elapsed: 00:00:00.44
# Mc/sec: 6446.95
//
Query:       KOO20998.1  [L=520]
Description: cgmp-dependent protein kinase 21d [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.3e-52  178.7   0.0    2.2e-52  178.0   0.0    1.4  1  Pkinase         Protein kinase domain
      8e-30  104.0   0.0    1.4e-29  103.2   0.0    1.3  1  Pkinase_Tyr     Protein tyrosine kinase
    1.4e-08   34.7   0.0    1.3e-07   31.5   0.0    2.2  2  cNMP_binding    Cyclic nucleotide-binding domain
    1.1e-06   27.7   0.0    1.7e-06   27.1   0.0    1.2  1  Pkinase_fungal  Fungal protein kinase
    9.1e-05   21.9   0.0    0.00019   20.9   0.0    1.5  1  Kdo             Lipopolysaccharide kinase (Kdo/WaaP) family
     0.0045   16.4   0.0     0.0074   15.6   0.0    1.4  1  Kinase-like     Kinase-like
  ------ inclusion threshold ------
      0.068   13.1   0.0       0.64    9.9   0.0    2.3  3  APH             Phosphotransferase enzyme family


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  178.0   0.0   8.8e-56   2.2e-52       4     264 .]     222     491 ..     219     491 .. 0.91

  Alignments for each domain:
  == domain 1  score: 178.0 bits;  conditional E-value: 8.8e-56
                 EEEEEEESSEEEEEEEETTTTEEEEEEEEECHCHCHHHH..HHHHHHHHHHHHHSCTTB--EEEEEEE.SSEEEEEEE--TTEBHHHHHH...HHSS-- CS
     Pkinase   4 leklGeGsfGkVykaveketgkivAvKkikkekakkkke..kkvlrEikilkklkhpnivrlyevfee.kdelylvleyveggeladlle...rkgsls 96 
                 +  lG+G+fG+V  +v+k t+k +A+K+ +   ++ ++   + + rEi+ +++  +p+++r+y+ + + +++ y++le++ gg+l+dl+    ++g++s
  KOO20998.1 222 VAILGKGQFGEVHLIVHKPTRKAYALKIQDSAGMNGRTPlrTLIDREIACMREGASPFLMRFYGEYVDaQKKSYMLLEHLGGGSLEDLMAdhrNSGAMS 320
                 5689****************************9999999988899******************866665999*****************98877778** PP

                 HHHHHHHHHHHHHHHHHHHHTTEE-SS-SGGGEEEETTTEEEE-SGTTSEESSSSCSBCTTTSCGGGS-HHHHTTSCBSHHHHHHHHHHHHHHHHHSS- CS
     Pkinase  97 eeeakkiakqilegleylHskgiiHrDlKpeNiLidekgelKitDFGlakelessskltsfvgtseYlAPEvlkeneyskkvDvWslGvilyelltgkp 195
                  ++++++++ ++++++ lHs+  +HrDl  +N++i+++g  K++D Glak++++s+++ + +gt+ YlAPE++++++y++k+ vW+lGv+l++++tg+ 
  KOO20998.1 321 LHTCRFYFACMCSAFDALHSAAWMHRDLSAKNVMISRRGYCKVIDVGLAKRVSESEHTYTSCGTPLYLAPEIIHKTGYGHKAEVWALGVLLFQITTGRF 419
                 *************************************************************************************************** PP

                 STTTSSHHHHHHHHHHTHHHHHHHCT....SHH...HHHTTS-HHHHHHHHHHT-SSGCCSTTHHHHHTSGGG CS
     Pkinase 196 pfsgekgkekvekeldqlekilkilg....etkeklpeaseiseeakdllkkllkkdpkkRltaeellqhpyl 264
                 pf    ++++++  ++++e  + i++     ++  + +   + +  k+l++++l+k p++R+ + ++ +++++
  KOO20998.1 420 PFM-PPKDSTATGAARKMELYQAIIKsqpaMSDPCFTQTGALGQATKELIERMLDKRPSERINIPNIFKSSFF 491
                 ***.66666788899998888998887443334444444455***************************9998 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  103.2   0.0   5.5e-33   1.4e-29       6     252 ..     224     482 ..     220     488 .. 0.75

  Alignments for each domain:
  == domain 1  score: 103.2 bits;  conditional E-value: 5.5e-33
                  EEEEESSEEEEEEEEETTTTSSEEEEEEEEESTTSSHHH...HHHHHHHHHHHHTS-BTTB--EEEEEE.SSSSEEEEEE--TTEBHHHHHHHTCTT. CS
  Pkinase_Tyr   6 klGeGafGkVvegtlkgekekkevkVavKtlkeeateee...keelleeakimkklkhpnivkllgvct.keepllivteyvkgGdLlkfLrkkeke. 98 
                   lG+G+fG+V+    k     ++   a+K+ ++  ++ +   ++ + +e+++m++   p +++++g ++  +++ ++++e + gG+L++ + +++++ 
   KOO20998.1 224 ILGKGQFGEVHLIVHK----PTRKAYALKIQDSAGMNGRtplRTLIDREIACMREGASPFLMRFYGEYVdAQKKSYMLLEHLGGGSLEDLMADHRNSg 317
                  69*********99888....6777788888865444333242444556******************999777889****************9995441 PP

                  TSBHHHHHHHHHHHHHHHHHHHHTTEEEST-SGGGEEEEETTEEEE-STTTHEETTTSSEEEETTSSTSGGGGS-HHHHHHSEEEHHHHHHHHHHHHH CS
  Pkinase_Tyr  99 kltlkdllsfalqvAkGmeyLeskklvHrdlaarNvLlsenkvvkisDfGLardiekddeyvkkeeaklpvkWmapEslkekkftsksDvWsfGvllw 196
                  +++l++   + + ++++ + L+s   +Hrdl+a+Nv++s++  +k+ D GLa++++++++++  +++ +p+ ++apE+++++ + +k+ vW+ Gvll+
   KOO20998.1 318 AMSLHTCRFYFACMCSAFDALHSAAWMHRDLSAKNVMISRRGYCKVIDVGLAKRVSESEHTY--TSCGTPL-YLAPEIIHKTGYGHKAEVWALGVLLF 412
                  55566666666779*****************************************5554444..4455554.9************************* PP

                  HHHTTSSGT.........TTTSHHHHHHHHH.HTTEES-BBTTSB.....HHHHHHHHHHT-SSGGGS--H CS
  Pkinase_Tyr 197 Eiftlgesp.........ypglkneevlekl.kegkrlekpekcp.....eelyelmkkcweedpeeRptf 252
                   i t g+ p             +++e+++++ k++  ++ p  ++     ++ +el+++ ++++p+eR ++
   KOO20998.1 413 QITT-GRFPfmppkdstaTGAARKMELYQAIiKSQPAMSDPCFTQtgalgQATKELIERMLDKRPSERINI 482
                  **99.999966666666433346666676664555556655433211111456666666666666666665 PP

>> cNMP_binding  Cyclic nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.5   0.0   5.2e-11   1.3e-07       6      83 ..      76     147 ..      72     153 .. 0.91
   2 ?    0.3   0.0      0.29   7.4e+02      40      66 ..     220     246 ..     211     252 .. 0.73

  Alignments for each domain:
  == domain 1  score: 31.5 bits;  conditional E-value: 5.2e-11
                   TT-EEE-TTSB-SEEEEEEES-EEEEEEETTS.EEEEEEE-TTEEESHHHHHHTS--SSEEEESSTEEEEEEEHHHHH CS
  cNMP_binding   6 agevifrqGdpadslyivlsGevrvyrlsedgkevvlavlgpGdlfGelalltgeprtatvvAltdsellalprddfl 83 
                   + ev +r+G + d+ly+v++G+v v  +s + k+     lgpGd+fG  al tg++   t++ ++ +el++l r+ f+
    KOO20998.1  76 PREVAVREGSTIDYLYVVHTGRVLV--QSLNTKR----MLGPGDTFGQEALDTGGRADFTAIGQGSAELYRLHRQVFK 147
                   778999*******************..8888888....899*********************************9986 PP

  == domain 2  score: 0.3 bits;  conditional E-value: 0.29
                   EEEEEE-TTEEESHHHHHHTS-.-SSEE CS
  cNMP_binding  40 vvlavlgpGdlfGelalltgep.rtatv 66 
                   + +a+lg+G  fGe+ l+ ++p r+a +
    KOO20998.1 220 SSVAILGKG-QFGEVHLIVHKPtRKAYA 246
                   467788888.699*99995455477765 PP

>> Pkinase_fungal  Fungal protein kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.1   0.0   6.7e-10   1.7e-06     318     392 ..     334     401 ..     328     412 .. 0.85

  Alignments for each domain:
  == domain 1  score: 27.1 bits;  conditional E-value: 6.7e-10
  Pkinase_fungal 318 ghrsLflkagiLHrDiSenNilitdskkegerkglLiDLDlakelsddssesgarertGTleFmaievlkgee..Hs 392
                     ++  L+  a ++HrD S++N++i      ++    +iD+ lak +s+ s++    +  GT+ ++a e+++++   H+
      KOO20998.1 334 AFDALH-SAAWMHRDLSAKNVMIS-----RRGYCKVIDVGLAKRVSE-SEH--TYTSCGTPLYLAPEIIHKTGygHK 401
                     788999.9****************.....6777789**********7.333..35799*********9997545676 PP

>> Kdo  Lipopolysaccharide kinase (Kdo/WaaP) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.9   0.0   7.5e-08   0.00019      47     166 ..     243     366 ..     232     377 .. 0.76

  Alignments for each domain:
  == domain 1  score: 20.9 bits;  conditional E-value: 7.5e-08
         Kdo  47 dlyrfklgrtravrEfrllkrLeeagvavpk......pvaagavkvgleyrAlllterlegaqdLedllakwae...laeelkrallkavgrliaklhr 136
                  +y +k++    ++    l+ L ++ +a ++       + ++ + v+ + ++ +l e+l g  +Ledl+a++++   ++ +  r  +     ++  lh+
  KOO20998.1 243 KAYALKIQDSAGMNGRTPLRTLIDREIACMRegaspfLMRFYGEYVDAQKKSYMLLEHLGG-GSLEDLMADHRNsgaMSLHTCRFYFACMCSAFDALHS 340
                 55555555555666666666666666666652222113445566788999*********77.69*******99987777777788889999******** PP

         Kdo 137 agvnHadlyaknillqqeeeeeaeiwliDl 166
                 a ++H+dl akn+++  ++     + +iD 
  KOO20998.1 341 AAWMHRDLSAKNVMISRRG----YCKVIDV 366
                 ****************999....8888886 PP

>> Kinase-like  Kinase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.0   2.9e-06    0.0074     127     284 ..     306     475 ..     290     479 .. 0.74

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 2.9e-06
  Kinase-like 127 lnkvlqkrsethkkletiarlllTlqlirlaanLqakglvhgkftvdnllldekgglmlggftaLvragtkvvlseve..kgfaPpEllgsrggytrk 222
                  l +++  + +  +   + +r +    +      L++   +h +++++n++  ++g  ++ +++   r+ ++    + +    +  pE++         
   KOO20998.1 306 LEDLMADHRNSGAMSLHTCRFYFAC-MCSAFDALHSAAWMHRDLSAKNVMISRRGYCKVIDVGLAKRVSESEHTYTSCgtPLYLAPEII--------- 393
                  5566666666666666777777755.777778899999***********************9987777777663222212334444554......... PP

  Kinase-like 223 nktkmthkldaWqlGlviyriwclklPltlateeakeew....................kfklckkipekvkaLlkkfLqls 284
                  +kt + hk ++W+lG+  + i     P+  +++                           f +    +++ k L++++L   
   KOO20998.1 394 HKTGYGHKAEVWALGVLLFQITTGRFPFMPPKDSTATGAarkmelyqaiiksqpamsdpCFTQTGALGQATKELIERMLDKR 475
                  56899******************99998766554443333555888888888888888888888888888888888888655 PP

>> APH  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.0      0.83   2.1e+03      63      94 ..     287     319 ..     235     341 .. 0.66
   2 ?    9.9   0.0   0.00025      0.64     161     196 ..     339     369 ..     331     371 .. 0.78
   3 ?   -1.9   0.0      0.97   2.5e+03     111     162 ..     420     477 ..     402     482 .. 0.67

  Alignments for each domain:
  == domain 1  score: -1.6 bits;  conditional E-value: 0.83
                 -EEETTEEEEEEE----EE-SS.HHHHHHHHHH CS
         APH  63 ddeeigllfalieyvpgrsllr.klsaaqlpel 94 
                   + +   + l+e ++g sl++ + +++ ++++
  KOO20998.1 287 YVDAQKKSYMLLEHLGGGSLEDlMADHRNSGAM 319
                 334444458899999999999977777776665 PP

  == domain 2  score: 9.9 bits;  conditional E-value: 0.00025
                 -SSS-EEEE-SS-SGGGEEEC..TTEEEEE---TT- CS
         APH 161 pgelptvllHgDlhpgNllvdpddgrvtGviDfeda 196
                 +   ++ ++H+Dl+  N+++  + g +  viD ++a
  KOO20998.1 339 H---SAAWMHRDLSAKNVMIS-RRGYC-KVIDVGLA 369
                 4...689**************.44444.68998776 PP

  == domain 3  score: -1.9 bits;  conditional E-value: 0.97
                 STTTB-SHHC....HTCCHHHHHHCHHHCCCGCCTCC..HHHHHHHHHHHHHHHH--S CS
         APH 111 aalpladfla....qdlellrqlesatarllaselld..lleeleeqvlaalaallpg 162
                 ++ p+ d +a    + +el++ + +++++  ++ + +   l ++++++++++++ +p+
  KOO20998.1 420 PFMPPKDSTAtgaaRKMELYQAIIKSQPAMSDPCFTQtgALGQATKELIERMLDKRPS 477
                 4444444444222255667788888888777777777898899999999999999984 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (520 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       430  (0.0239835); expected 358.6 (0.02)
Passed bias filter:                      416  (0.0232026); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.55u 0.25s 00:00:00.80 Elapsed: 00:00:00.41
# Mc/sec: 3762.47
//
Query:       KOO20999.1  [L=174]
Description: arsenate glutathione glutaredoxin type [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.1e-15   56.8   0.0    4.3e-15   56.3   0.0    1.2  1  LMWPc     Low molecular weight phosphotyrosine protein phosph


Domain annotation for each model (and alignments):
>> LMWPc  Low molecular weight phosphotyrosine protein phosphatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.3   0.0   2.4e-19   4.3e-15       1     142 []      17     150 ..      17     150 .. 0.84

  Alignments for each domain:
  == domain 1  score: 56.3 bits;  conditional E-value: 2.4e-19
                 EEEEESSSSSHHHHHHHHHHHHHHHTT-CCCEEEEEEESTSTTT-B--HHHHHHHHHTTS--TT-BB-BS-HHHHHHSSEEEESSHHHHHHHHHHCCTT CS
       LMWPc   1 vlfvClgNicRSpmAealfrkelekagleekvevdSaGtgalvgkradpravevlkekgislsghvarqlskeelaelDlilamdeenkreleslapek 99 
                 v+f C+ N+cRS+mA+  +r++ e ag    + v SaG++   ++++++ a+ v++e gi+ls+ ++  ls    + +D+++  ++   +   +l+  +
  KOO20999.1  17 VMFLCMHNSCRSQMADGWMRRLCEVAG--VPIGVASAGIK--DSREIKRGAIVVMAEVGIDLSQATSHALSSYSSDVFDVVVSCCACGDHLSGELETWR 111
                 79***********************75..5569*******..****************************************99776665555555552 PP

                 GGGGEEEGGGGSSTSS---HT...TSSHHHHHHHHHHHHHHHHHHH CS
       LMWPc 100 ekakvkllgeyteqldieDPy...ygeieafeevldeieeavkkll 142
                 +  + +l+     +++++ P     g+ + +++v+de  e++ +ll
  KOO20999.1 112 H--R-TLFF----DWNLDGPEkldPGDLSVYRRVRDETHEKCADLL 150
                 2..2.3444....578888883334558999999999999999886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (174 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       495  (0.0276089); expected 358.6 (0.02)
Passed bias filter:                      372  (0.0207485); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.22s 00:00:00.65 Elapsed: 00:00:00.41
# Mc/sec: 1268.54
//
Query:       KOO21000.1  [L=436]
Description: ef hand family protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (436 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       525  (0.0292822); expected 358.6 (0.02)
Passed bias filter:                      362  (0.0201908); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.47u 0.25s 00:00:00.72 Elapsed: 00:00:00.40
# Mc/sec: 3300.86
//
Query:       KOO21001.1  [L=198]
Description: hypothetical protein Ctob_001162, partial [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.25   11.1   4.2       0.34   10.7   4.2    1.1  1  MCPVI     Minor capsid protein VI


Domain annotation for each model (and alignments):
>> MCPVI  Minor capsid protein VI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   4.2   1.9e-05      0.34     116     216 ..      66     168 ..      62     173 .. 0.65

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 1.9e-05
                 XXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.....XXXXXXXXXXXXXXXX..XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
       MCPVI 116 qeeleaLiaaldpkdeeavkqgeptvePiaPeaksvl.....vPvtldlpesvdevkk..PvlssesavvvsrPsrlelrraaskrrrkRkrasgWrat 207
                 qe l+a  +a ++ de av q  p +eP+ Pe +        vPv+ +   +v   k+  Pv++++s  + + P    lrr+++   r    +    ++
  KOO21001.1  66 QEALDAFGTAHQSADEAAVSQ--PEAEPAEPESSDEEapaatVPVEKPANATVPRPKPaaPVVAAPSVPTGTSP---RLRRSSPFTGRTMMTPKAASSF 159
                 777888888889999999876..678899998877663334466666665555533322255555444444455...8999888777766666677788 PP

                 XXXXXXX-- CS
       MCPVI 208 LdslvGlGv 216
                 +++++  G 
  KOO21001.1 160 VEAITDAGL 168
                 888887775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (198 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       534  (0.0297841); expected 358.6 (0.02)
Passed bias filter:                      359  (0.0200234); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.25s 00:00:00.65 Elapsed: 00:00:00.40
# Mc/sec: 1483.73
//
Query:       KOO21002.1  [L=1454]
Description: calcium dependent protein kinase 15 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      2e-18   64.5   2.5    3.9e-05   22.9   0.0    3.9  3  EF-hand_1        EF hand
    1.3e-16   59.0   5.5    2.1e-05   24.0   0.0    3.8  3  EF-hand_6        EF-hand domain
    4.1e-16   59.2   3.6      8e-11   42.2   0.9    2.7  2  EF-hand_7        EF-hand domain pair
    5.1e-13   48.7   4.1    7.3e-08   32.1   0.5    3.7  3  EF-hand_8        EF-hand domain pair
    1.8e-09   36.6   3.8      0.017   14.6   0.2    3.8  3  EF-hand_5        EF hand
    3.4e-06   26.8   1.5    0.00043   20.1   0.3    3.1  3  EF-hand_10       EF hand
     0.0062   16.5   0.3        9.2    6.3   0.0    3.3  3  EF-hand_4        Cytoskeletal-regulatory complex EF hand
     0.0062   16.5   8.7       0.25   11.4   0.0    6.3  9  Atx10homo_assoc  Spinocerebellar ataxia type 10 protein domai
  ------ inclusion threshold ------
       0.13   12.3   0.1       0.13   12.3   0.1   10.2 11  Arm              Armadillo/beta-catenin-like repeat
        5.1    7.0   8.8        8.4    6.3   0.8    3.5  3  zf_C2HC_14       C2HC Zing finger domain


Domain annotation for each model (and alignments):
>> EF-hand_1  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.9   0.0   2.2e-08   3.9e-05       2      27 ..      35      60 ..      34      62 .. 0.91
   2 !   17.2   0.2   1.4e-06    0.0025       2      23 ..      71      92 ..      70      93 .. 0.91
   3 !   22.1   0.1   3.9e-08   7.1e-05       2      28 ..     161     187 ..     160     188 .. 0.93

  Alignments for each domain:
  == domain 1  score: 22.9 bits;  conditional E-value: 2.2e-08
                HHHHHHHHTTTSSSEEEHHHHHHHHH CS
   EF-hand_1  2 lkeiFrefDkDgdGkIdfeEfkellk 27
                l e+Fr+ D+D++G+++++Ef+++l+
  KOO21002.1 35 LIEVFRHHDTDQSGTLEYDEFRRALS 60
                5699*******************997 PP

  == domain 2  score: 17.2 bits;  conditional E-value: 1.4e-06
                HHHHHHHHTTTSSSEEEHHHHH CS
   EF-hand_1  2 lkeiFrefDkDgdGkIdfeEfk 23
                +k +F ++D+Dg+Gk++f Ef 
  KOO21002.1 71 CKTLFHIADTDGSGKLEFAEFF 92
                7899*****************5 PP

  == domain 3  score: 22.1 bits;  conditional E-value: 3.9e-08
                 HHHHHHHHTTTSSSEEEHHHHHHHHHH CS
   EF-hand_1   2 lkeiFrefDkDgdGkIdfeEfkellkk 28 
                 ++e F+ fD DgdG+++ +Ef++++++
  KOO21002.1 161 VRETFARFDFDGDGRMSAKEFVKVIRA 187
                 689********************9987 PP

>> EF-hand_6  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.0   0.0   1.2e-08   2.1e-05       2      28 ..      35      61 ..      34      67 .. 0.91
   2 !   12.9   0.5   4.4e-05     0.078       3      27 ..      72      96 ..      70     102 .. 0.87
   3 !   22.2   0.1   4.7e-08   8.5e-05       2      30 ..     161     188 ..     160     189 .. 0.92

  Alignments for each domain:
  == domain 1  score: 24.0 bits;  conditional E-value: 1.2e-08
   EF-hand_6  2 lreaFklfDkdgdGkidaeElrkalrk 28
                l e+F+++D+d +G++ ++E+r+al++
  KOO21002.1 35 LIEVFRHHDTDQSGTLEYDEFRRALSQ 61
                789**********************96 PP

  == domain 2  score: 12.9 bits;  conditional E-value: 4.4e-05
   EF-hand_6  3 reaFklfDkdgdGkidaeElrkalr 27
                + +F++ D+dg+Gk+ ++E+ + +r
  KOO21002.1 72 KTLFHIADTDGSGKLEFAEFFNNFR 96
                579*****************88777 PP

  == domain 3  score: 22.2 bits;  conditional E-value: 4.7e-08
   EF-hand_6   2 lreaFklfDkdgdGkidaeElrkalrkal 30 
                 +re F  fD+dgdG  +a+E++k++r al
  KOO21002.1 161 VRETFARFDFDGDGRMSAKEFVKVIR-AL 188
                 6899*********************9.65 PP

>> EF-hand_7  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.2   0.9   4.5e-14     8e-11       3      68 ..      34      93 ..      32      96 .. 0.93
   2 !   16.7   0.1   4.2e-06    0.0076      45      70 ..     160     185 ..     143     207 .. 0.62

  Alignments for each domain:
  == domain 1  score: 42.2 bits;  conditional E-value: 4.5e-14
   EF-hand_7  3 klkeaFkelDtdgdgyldkeellrllrkifqgagegsklsdeelellfkefDtdkdGvisfdEFlk 68
                +l e+F+ +Dtd++g l+++e++r+l         + +l+++  ++lf+  Dtd++G++ f EF +
  KOO21002.1 34 ALIEVFRHHDTDQSGTLEYDEFRRALS------QINLELTEKDCKTLFHIADTDGSGKLEFAEFFN 93
                68899**********************......7889999999*********************75 PP

  == domain 2  score: 16.7 bits;  conditional E-value: 4.2e-06
   EF-hand_7  45 elellfkefDtdkdGvisfdEFlkly 70 
                  +++ f  fD d+dG++s  EF+k +
  KOO21002.1 160 NVRETFARFDFDGDGRMSAKEFVKVI 185
                 36666666666666666666666654 PP

>> EF-hand_8  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.2   0.0   6.7e-05      0.12      31      49 ..      38      56 ..      32      59 .. 0.90
   2 !   32.1   0.5   4.1e-11   7.3e-08       8      50 ..      53      93 ..      53      97 .. 0.94
   3 !   10.0   0.2   0.00034      0.62       6      50 ..     143     183 ..     143     186 .. 0.80

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 6.7e-05
   EF-hand_8 31 lfrefDtdgdGkisfeEFc 49
                +fr++Dtd++G++ ++EF 
  KOO21002.1 38 VFRHHDTDQSGTLEYDEFR 56
                7*****************6 PP

  == domain 2  score: 32.1 bits;  conditional E-value: 4.1e-11
   EF-hand_8  8 eelrrilrilglkkglseeevdilfrefDtdgdGkisfeEFcv 50
                +e+rr+l+ + l+  l+e+++ +lf  +Dtdg+Gk+ f EF++
  KOO21002.1 53 DEFRRALSQINLE--LTEKDCKTLFHIADTDGSGKLEFAEFFN 93
                79*****999***..**************************97 PP

  == domain 3  score: 10.0 bits;  conditional E-value: 0.00034
   EF-hand_8   6 treelrril.rilglkkglseeevdilfrefDtdgdGkisfeEFcv 50 
                 tr+el +++ +++       +++v++ f +fD+dgdG+ s +EF+ 
  KOO21002.1 143 TRDELLEMIqSKV-----DCASNVRETFARFDFDGDGRMSAKEFVK 183
                 6777777666665.....246889999*****************86 PP

>> EF-hand_5  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.3   0.0   0.00096       1.7       3      23 ..      37      57 ..      35      60 .. 0.83
   2 !   12.6   0.2   4.1e-05     0.074       4      21 ..      74      91 ..      72      95 .. 0.91
   3 !   14.6   0.2   9.6e-06     0.017       2      24 ..     162     184 ..     161     185 .. 0.90

  Alignments for each domain:
  == domain 1  score: 8.3 bits;  conditional E-value: 0.00096
                HHHHHH-SS-SSCE-HHHHHH CS
   EF-hand_5  3 dtFqaiDlNgDGkIskeELkt 23
                ++F+  D++++G++  +E+++
  KOO21002.1 37 EVFRHHDTDQSGTLEYDEFRR 57
                567777*************98 PP

  == domain 2  score: 12.6 bits;  conditional E-value: 4.1e-05
                HHHHH-SS-SSCE-HHHH CS
   EF-hand_5  4 tFqaiDlNgDGkIskeEL 21
                +F  +D++g+Gk+ + E+
  KOO21002.1 74 LFHIADTDGSGKLEFAEF 91
                799**************9 PP

  == domain 3  score: 14.6 bits;  conditional E-value: 9.6e-06
                 HHHHHHH-SS-SSCE-HHHHHHH CS
   EF-hand_5   2 kdtFqaiDlNgDGkIskeELktl 24 
                 ++tF ++D +gDG+ s+ E+ ++
  KOO21002.1 162 RETFARFDFDGDGRMSAKEFVKV 184
                 689*****************765 PP

>> EF-hand_10  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.5   0.0     0.018        32      25      44 ..      37      56 ..      31      58 .. 0.91
   2 !   20.1   0.3   2.4e-07   0.00043       2      43 ..      50      91 ..      49      97 .. 0.92
   3 ?    3.8   0.0     0.029        51       1      26 [.     175     200 ..     175     203 .. 0.94

  Alignments for each domain:
  == domain 1  score: 4.5 bits;  conditional E-value: 0.018
  EF-hand_10 25 kLFkkcDkSksgrLegeEie 44
                ++F++ D+ +sg+Le  E+ 
  KOO21002.1 37 EVFRHHDTDQSGTLEYDEFR 56
                68*************99985 PP

  == domain 2  score: 20.1 bits;  conditional E-value: 2.4e-07
  EF-hand_10  2 msfkEvkrlLreiNievddeYAekLFkkcDkSksgrLegeEi 43
                + ++E +r L +iN+e+ ++  ++LF  +D+  sg+Le  E+
  KOO21002.1 50 LEYDEFRRALSQINLELTEKDCKTLFHIADTDGSGKLEFAEF 91
                579**********************************99886 PP

  == domain 3  score: 3.8 bits;  conditional E-value: 0.029
  EF-hand_10   1 kmsfkEvkrlLreiNievddeYAekL 26 
                 +ms kE  + +r + ++v ++ Ae++
  KOO21002.1 175 RMSAKEFVKVIRALQVDVTESQAEQV 200
                 7********************99985 PP

>> EF-hand_4  Cytoskeletal-regulatory complex EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.2   0.0     0.092   1.7e+02      43      68 ..      33      58 ..      26      63 .. 0.84
   2 !    6.3   0.0    0.0052       9.2      38      66 ..      64      92 ..      60      97 .. 0.87
   3 ?    3.5   0.0     0.038        67      45      89 ..     161     206 ..     137     220 .. 0.75

  Alignments for each domain:
  == domain 1  score: 2.2 bits;  conditional E-value: 0.092
   EF-hand_4 43 dklekiwdladidedgkldfeefcia 68
                + l +++   d d+ g+l+++ef  a
  KOO21002.1 33 NALIEVFRHHDTDQSGTLEYDEFRRA 58
                568889999**************755 PP

  == domain 2  score: 6.3 bits;  conditional E-value: 0.0052
   EF-hand_4 38 skleedklekiwdladidedgkldfeefc 66
                 +l+e+  + ++++ad d  gkl+f ef 
  KOO21002.1 64 LELTEKDCKTLFHIADTDGSGKLEFAEFF 92
                5788999999*****************96 PP

  == domain 3  score: 3.5 bits;  conditional E-value: 0.038
   EF-hand_4  45 lekiwdladidedgkldfeefciamr.lifdlvngeikdvPselPe 89 
                 + + +   d d dg++  +ef+ ++r l  d+ + + ++v s +  
  KOO21002.1 161 VRETFARFDFDGDGRMSAKEFVKVIRaLQVDVTESQAEQVISAINA 206
                 555666779************9887746789999999998877765 PP

>> Atx10homo_assoc  Spinocerebellar ataxia type 10 protein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.0       1.4   2.4e+03      24      67 ..     616     659 ..     612     678 .. 0.78
   2 ?   -2.5   0.1       2.9   5.2e+03      16      49 ..     652     685 ..     641     702 .. 0.61
   3 ?   -0.8   0.1      0.88   1.6e+03       7      67 ..     863     923 ..     860     931 .. 0.88
   4 ?   -0.3   0.0      0.61   1.1e+03      31      62 ..     932     963 ..     907     967 .. 0.85
   5 !    9.9   0.0   0.00041      0.74      20      69 ..    1017    1066 ..    1013    1095 .. 0.82
   6 !   11.4   0.0   0.00014      0.25       4      62 ..    1045    1103 ..    1044    1110 .. 0.93
   7 ?    1.9   0.0      0.12   2.2e+02      17      63 ..    1102    1148 ..    1092    1161 .. 0.76
   8 ?   -0.4   0.0      0.67   1.2e+03      22      59 ..    1160    1197 ..    1154    1201 .. 0.89
   9 ?   -1.9   0.0       1.9   3.4e+03      22      66 ..    1373    1420 ..    1366    1435 .. 0.69

  Alignments for each domain:
  == domain 1  score: -1.4 bits;  conditional E-value: 1.4
  Atx10homo_assoc  24 reldgleliLsqcniDdnnPfirewailairnLlegneenqelv 67 
                       +++gl +i  +++++ + P i+++a  a+ ++    ++ ++lv
       KOO21002.1 616 AQCGGLDAIVLAMRVHLSAPDIQQRASTALAQVASVDNKCRHLV 659
                      57889999999999999999999999999877766655555555 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 2.9
  Atx10homo_assoc  16 nkevqdkvreldgleliLsqcniDdnnPfirewa 49 
                      +++++  v e +g++ +  ++ ++++  ++  ++
       KOO21002.1 652 DNKCRHLVIEIGGIQSLVAAMTMHQDLAILCIRC 685
                      5566666777777777776666665555444444 PP

  == domain 3  score: -0.8 bits;  conditional E-value: 0.88
  Atx10homo_assoc   7 rllgnlvyknkevqdkvreldgleliLsqcniDdnnPfirewailairnLlegneenqelv 67 
                      ++l nl  + k+v d++ + ++l ++  +   ++ n    ++a  ++ n   g  e+++++
       KOO21002.1 863 AVLCNLLTSGKQVADRLLQSGALHIVRGAAIANAMNKHALDQACRCVLNASTGDTESKAFI 923
                      68999999****************9999999999999999999999999888888888877 PP

  == domain 4  score: -0.3 bits;  conditional E-value: 0.61
  Atx10homo_assoc  31 liLsqcniDdnnPfirewailairnLlegnee 62 
                      ++L +++ ++++  + e +i a+ nL+ g+e+
       KOO21002.1 932 VLLASMRSHSDDANLAELSISALANLVAGSEA 963
                      68899999999999*************99875 PP

  == domain 5  score: 9.9 bits;  conditional E-value: 0.00041
  Atx10homo_assoc   20 qdkvreldgleliLsqcniDdnnPfirewailairnLlegneenqelvae 69  
                       ++ ++e+++++++L +++++     + e a+  +rnL  gn++ ++ + e
       KOO21002.1 1017 RQAIVEESAVSIVLGAMVVHTYCQPVVEEAVAFVRNLAAGNHKCRSAIVE 1066
                       678999999**********9999999999*************99998854 PP

  == domain 6  score: 11.4 bits;  conditional E-value: 0.00014
  Atx10homo_assoc    4 elvrllgnlvyknkevqdkvreldgleliLsqcniDdnnPfirewailairnLlegnee 62  
                       e v+++ nl+  n ++++ ++e +gl  ++++++ +     i e + la+rn+  g+ e
       KOO21002.1 1045 EAVAFVRNLAAGNHKCRSAIVEANGLRHLIKAIKQHGTSEAIAELGCLALRNIASGTTE 1103
                       5788999**********************************************988765 PP

  == domain 7  score: 1.9 bits;  conditional E-value: 0.12
  Atx10homo_assoc   17 kevqdkvreldgleliLsqcniDdnnPfirewailairnLlegneen 63  
                       +e    v + +g+e i s+ + +     +   ++ a+rnL     en
       KOO21002.1 1102 TEHLAGVMAAGGIECIVSSLRRHTCSSTVVYAGLAALRNLAVAEWEN 1148
                       55666788999*****************************8754443 PP

  == domain 8  score: -0.4 bits;  conditional E-value: 0.67
  Atx10homo_assoc   22 kvreldgleliLsqcniDdnnPfirewailairnLleg 59  
                        + + dg+++i + +  + nn  ++ ++  a+rn+  g
       KOO21002.1 1160 AIIDADGISAIVEVMGAHINNANVQLQGCAALRNIACG 1197
                       577899****************************9776 PP

  == domain 9  score: -1.9 bits;  conditional E-value: 1.9
  Atx10homo_assoc   22 kvreldg.leliLsqcniDdnnPfirewailairn..Llegneenqel 66  
                       ++ +ldg l+++++ + +++n+  +  +ai ++ +  L+ ++ e + +
       KOO21002.1 1373 QFCALDGaLQALIDVVPFHENDEGVFGQAIACLGQivLCLSSDEMKLI 1420
                       455566669999999999999999999999999762245555555555 PP

>> Arm  Armadillo/beta-catenin-like repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.4   0.2       0.2   3.6e+02       5      37 ..     612     646 ..     610     650 .. 0.78
   2 ?    5.0   0.1     0.015        26       1      30 [.     652     682 ..     652     694 .. 0.86
   3 ?    1.4   0.0       0.2   3.6e+02       2      29 ..     697     725 ..     696     732 .. 0.78
   4 ?   -0.1   0.0      0.58     1e+03      12      25 ..     860     873 ..     854     874 .. 0.81
   5 ?   -3.1   0.0       5.2   9.3e+03      19      33 ..     878     892 ..     878     892 .. 0.89
   6 ?   -1.1   0.3       1.3   2.3e+03      22      40 ..     938     958 ..     931     959 .. 0.79
   7 ?    0.8   0.1       0.3   5.4e+02       6      41 .]    1018    1055 ..    1016    1055 .. 0.71
   8 ?   12.3   0.1   7.4e-05      0.13       1      41 []    1057    1099 ..    1057    1099 .. 0.92
   9 ?   -0.7   0.1      0.95   1.7e+03      11      40 ..    1111    1142 ..    1108    1143 .. 0.65
  10 ?    6.4   0.6    0.0052       9.4       7      40 ..    1160    1195 ..    1157    1196 .. 0.96
  11 ?   -0.1   0.3      0.61   1.1e+03      25      39 ..    1278    1292 ..    1277    1293 .. 0.90

  Alignments for each domain:
  == domain 1  score: 1.4 bits;  conditional E-value: 0.2
                 HHHHHHTTHHHHHHHHTT..TSSHHHHHHHHHHHH CS
         Arm   5 kdavieaGavppLvrLLs..sedeevqeeAawALs 37 
                 ++a+ ++G++++ v  ++     +++q+ A +AL+
  KOO21002.1 612 IRALAQCGGLDAIVLAMRvhLSAPDIQQRASTALA 646
                 78999******999888886667778888877776 PP

  == domain 2  score: 5.0 bits;  conditional E-value: 0.015
                 SHHHHHHHHHTTHHHHHHHHTT.TSSHHHHH CS
         Arm   1 nsenkdavieaGavppLvrLLs.sedeevqe 30 
                 +++++ +vie G+++ Lv+ ++ ++d  +++
  KOO21002.1 652 DNKCRHLVIEIGGIQSLVAAMTmHQDLAILC 682
                 6899*******************99998876 PP

  == domain 3  score: 1.4 bits;  conditional E-value: 0.2
                 HHHHHHHHHTTHHHHHHHHTT.TSSHHHH CS
         Arm   2 senkdavieaGavppLvrLLs.sedeevq 29 
                 +e k a i++G++++ v+ ++ +  + v 
  KOO21002.1 697 DESKNACIQHGVIQVTVSVMReHLRVAVI 725
                 788999********999988877766665 PP

  == domain 4  score: -0.1 bits;  conditional E-value: 0.58
                 THHHHHHHHTTTSS CS
         Arm  12 GavppLvrLLssed 25 
                  ++ +L++LL+s++
  KOO21002.1 860 RGLAVLCNLLTSGK 873
                 58999******986 PP

  == domain 5  score: -3.1 bits;  conditional E-value: 5.2
                 HHTTTSSHHHHHHHH CS
         Arm  19 rLLssedeevqeeAa 33 
                 rLL+s+   +++ Aa
  KOO21002.1 878 RLLQSGALHIVRGAA 892
                 699****99999997 PP

  == domain 6  score: -1.1 bits;  conditional E-value: 1.3
                 T..TSSHHHHHHHHHHHHHHT CS
         Arm  22 s..sedeevqeeAawALsNLa 40 
                 +  s+d ++ e + +AL+NL 
  KOO21002.1 938 RshSDDANLAELSISALANLV 958
                 4569999999999******97 PP

  == domain 7  score: 0.8 bits;  conditional E-value: 0.3
                  HHHHHTTHHHHHHHHTT..TSSHHHHHHHHHHHHHHTT CS
         Arm    6 davieaGavppLvrLLs..sedeevqeeAawALsNLaa 41  
                  +a++e  av + +  +   +  + v+eeA++ ++NLaa
  KOO21002.1 1018 QAIVEESAVSIVLGAMVvhTYCQPVVEEAVAFVRNLAA 1055
                  56666666666666666666667799**********96 PP

  == domain 8  score: 12.3 bits;  conditional E-value: 7.4e-05
                  SHHHHHHHHHTTHHHHHHHHTT..TSSHHHHHHHHHHHHHHTT CS
         Arm    1 nsenkdavieaGavppLvrLLs..sedeevqeeAawALsNLaa 41  
                  n +++ a++ea+++++L++ ++   ++e + e  + AL+N+a+
  KOO21002.1 1057 NHKCRSAIVEANGLRHLIKAIKqhGTSEAIAELGCLALRNIAS 1099
                  5689*******************99999999999999999986 PP

  == domain 9  score: -0.7 bits;  conditional E-value: 0.95
                  TTHHHHHHHHTT.TSSHHHHHHH.HHHHHHHT CS
         Arm   11 aGavppLvrLLs.sedeevqeeA.awALsNLa 40  
                  aG+++  v+ L+ ++  +++  A ++AL+NLa
  KOO21002.1 1111 AGGIECIVSSLRrHTCSSTVVYAgLAALRNLA 1142
                  66666666666665555555555478999998 PP

  == domain 10  score: 6.4 bits;  conditional E-value: 0.0052
                  HHHHTTHHHHHHHHTT..TSSHHHHHHHHHHHHHHT CS
         Arm    7 avieaGavppLvrLLs..sedeevqeeAawALsNLa 40  
                  a+i+a ++ + v+ +     + +vq + ++AL+N+a
  KOO21002.1 1160 AIIDADGISAIVEVMGahINNANVQLQGCAALRNIA 1195
                  89*********************************8 PP

  == domain 11  score: -0.1 bits;  conditional E-value: 0.61
                  SHHHHHHHHHHHHHH CS
         Arm   25 deevqeeAawALsNL 39  
                  + e+q +A ++L+NL
  KOO21002.1 1278 HAETQLQASACLANL 1292
                  5799**********9 PP

>> zf_C2HC_14  C2HC Zing finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.2   0.1      0.48   8.6e+02      17      23 ..     210     216 ..     210     217 .. 0.91
   2 ?    3.3   0.2      0.04        71      13      24 ..     710     721 ..     709     722 .. 0.91
   3 ?    6.3   0.8    0.0047       8.4      10      22 ..     928     940 ..     926     942 .. 0.92

  Alignments for each domain:
  == domain 1  score: -0.2 bits;  conditional E-value: 0.48
  zf_C2HC_14  17 SkMRaHi 23 
                 S+MR Hi
  KOO21002.1 210 SEMRTHI 216
                 8*****8 PP

  == domain 2  score: 3.3 bits;  conditional E-value: 0.04
  zf_C2HC_14  13 qVcLSkMRaHia 24 
                 qV+ S MR+H++
  KOO21002.1 710 QVTVSVMREHLR 721
                 899*******97 PP

  == domain 3  score: 6.3 bits;  conditional E-value: 0.0047
  zf_C2HC_14  10 CekqVcLSkMRaH 22 
                 C+  V L+ MR+H
  KOO21002.1 928 CHRDVLLASMRSH 940
                 ************* PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1454 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       684  (0.0381505); expected 358.6 (0.02)
Passed bias filter:                      439  (0.0244855); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.85u 0.29s 00:00:01.13 Elapsed: 00:00:00.44
# Mc/sec: 9839.94
//
Query:       KOO21003.1  [L=378]
Description: hypothetical protein Ctob_001166 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
  ------ inclusion threshold ------
      0.035   13.9   0.0        1.9    8.2   0.0    2.5  2  DSBA          DSBA-like thioredoxin domain
       0.13   12.2   0.0        4.4    7.3   0.0    2.4  2  Dicistro_VP4  Cricket paralysis virus, VP4


Domain annotation for each model (and alignments):
>> DSBA  DSBA-like thioredoxin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.5   0.0     0.012   1.1e+02      54      78 ..     116     140 ..      98     151 .. 0.81
   2 ?    8.2   0.0   0.00022       1.9      52      82 ..     247     277 ..     233     286 .. 0.81

  Alignments for each domain:
  == domain 1  score: 2.5 bits;  conditional E-value: 0.012
                 SHHHHHHHHHHHHHHHHHHT....G CS
        DSBA  54 lpeklkylledlkrlaeaegiplrf 78 
                 lp+ +++++ +l++la+ egi+++ 
  KOO21003.1 116 LPRWMQEIFIKLRVLAKSEGIDMER 140
                 788899***************9975 PP

  == domain 2  score: 8.2 bits;  conditional E-value: 0.00022
                 GGSHHHHHHHHHHHHHHHHHHT....GGSSH CS
        DSBA  52 selpeklkylledlkrlaeaegiplrfpkdk 82 
                  +lp+ l++l +dl+r+a+ egi+l+f  ++
  KOO21003.1 247 DDLPPMLQQLCKDLRRMAKIEGISLEFSLQQ 277
                 3489999********************8776 PP

>> Dicistro_VP4  Cricket paralysis virus, VP4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.2   0.0      0.02   1.8e+02      11      32 ..      96     117 ..      87     119 .. 0.83
   2 ?    7.3   0.0   0.00049       4.4       5      32 ..     223     250 ..     220     253 .. 0.91

  Alignments for each domain:
  == domain 1  score: 2.2 bits;  conditional E-value: 0.02
                   ----GGG---.......TT--- CS
  Dicistro_VP4  11 lgsiSellttVakvAaalsriP 32 
                    g   + +t+  kvA+  s +P
    KOO21003.1  96 AGYADKIATGFDKVAGDYSTLP 117
                   5666689**********99999 PP

  == domain 2  score: 7.3 bits;  conditional E-value: 0.00049
                   TSS--S----GGG---.......TT--- CS
  Dicistro_VP4   5 kteetklgsiSellttVakvAaalsriP 32 
                   +t+et  g   + +t++ k+A++ +++P
    KOO21003.1 223 DTDETDAGYSDGIATGIDKIAGGFDDLP 250
                   6899999999999**************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (378 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       348  (0.0194099); expected 358.6 (0.02)
Passed bias filter:                      307  (0.0171231); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.44u 0.22s 00:00:00.66 Elapsed: 00:00:00.37
# Mc/sec: 3035.35
//
Query:       KOO21004.1  [L=892]
Description: kif3a protein, partial [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
   8.3e-119  396.4   0.0     1e-118  396.1   0.0    1.1  1  Kinesin      Kinesin motor domain
    3.2e-27   95.3   0.0    5.1e-27   94.6   0.0    1.3  1  Microtub_bd  Microtubule binding
  ------ inclusion threshold ------
      0.016   14.4   0.1      0.025   13.8   0.1    1.2  1  PIF1         PIF1-like helicase
        1.9    9.1  11.7       0.41   11.3   4.6    2.7  2  DoxX         DoxX


Domain annotation for each model (and alignments):
>> Kinesin  Kinesin motor domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  396.1   0.0  2.3e-122    1e-118       1     333 []     551     876 ..     551     876 .. 0.97

  Alignments for each domain:
  == domain 1  score: 396.1 bits;  conditional E-value: 2.3e-122
                 EE-SSSHHHHTTTTEBCEEEECTCTCEEEEEEEEECTTSCEEEEESEEEETTS-HHHHHHHHHHHHHHHHHTTSEEEEEEEESTTSSHHHHHTBC..TT CS
     Kinesin   1 RvRplnekekeeeeeeeveveeekkeeekkskkenkeeeekkfkFdkvfdeeatqeevyeetakplvesvleGynatifaYGqtgsGKTyTmegk..ee 97 
                 R+Rpln+ke e+  e++v+++   ++ + + +    +e  k+f+Fd+v+++++ qe +y++ a+++v+svl+Gyn+tifaYGqtg+GKT+Tmeg   +e
  KOO21004.1 551 RCRPLNKKELEDGREQIVHMD--PTNGTCTVTPPGANEPPKNFTFDAVYAPNTRQEVLYKQSASSIVDSVLQGYNGTIFAYGQTGTGKTFTMEGVnhDE 647
                 9*****************998..677888888999999********************************************************97778 PP

                 TSBSHHHHHHHHHHHHHHHCTTTHEEEEEEEEEEEEEETTEEEETTSTTTTSTSSEBEEEECTTSCCEEETTS--EEESSHHHHHHHHHHHHHHHTSTT CS
     Kinesin  98 eeeGiipraleelFesikkekeekekefsvkvsylEiYneeiyDLLeskkskkkkklkiredskkgevyvkgltevevksaeevlellekgeknrkvae 196
                 e +Giipra+ ++F  i+++    + ef v+ sylEiYneei+DLL+++   +++kl+++e+++ g vyv++lt+  vks++e+ +l + g+knr+v++
  KOO21004.1 648 ELKGIIPRAFMQIFAGIETSGGA-NREFLVRASYLEIYNEEIRDLLSKN---SANKLELKENPDAG-VYVRDLTSYVVKSTRECDKLRDFGAKNRHVGA 741
                 889**************987766.99*********************99...5667********98.******************************** PP

                 SSCTSHHCCSEEEEEEEEEEEETTTTTCEEEEEEEEEEEEEEECCCHHHHSSTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCCTSTSCGGGSHHHHHTG CS
     Kinesin 197 tklneeSSRSHavftitleqknlkeeteekvkisklnLvDLAGsErasktgaaegerlkEaaniNkSLlaLgrvisaLaekkkskhipYRdSkLTrlLq 295
                 t++n++SSRSH+++tit+e+ ++ e+ + +++++klnLvDLAGsEr+skt+a +g+rlkEa++iN SL+aLg++isaL++  ks+hipYRdSkLTrlLq
  KOO21004.1 742 TAMNQDSSRSHSIYTITVESCETREDGSPSIRMGKLNLVDLAGSERQSKTQA-SGDRLKEATKINLSLSALGNCISALVDG-KSAHIPYRDSKLTRLLQ 838
                 ************************999999*********************5.7999************************.***************** PP

                 GGHSSSSEEEEEEEE-TBGGGHHHHHHHHHHHHHHCTT CS
     Kinesin 296 dsLgGnsktlmivtvspssenleetlstlkfaerakei 333
                 dsLgGn+kt+m++++ p++ n++et+stl++a+rak+i
  KOO21004.1 839 DSLGGNTKTVMVANLGPADWNYDETISTLRYANRAKNI 876
                 ************************************98 PP

>> Microtub_bd  Microtubule binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   94.6   0.0   1.1e-30   5.1e-27      21     149 .]     545     692 ..     539     692 .. 0.88

  Alignments for each domain:
  == domain 1  score: 94.6 bits;  conditional E-value: 1.1e-30
                  B-EEEEEEECCCS-T........EEEETTT..............TTTEEEE-SEEEECTTHCCCCC.CCCHHHHHHHHTT--EEEEEEES........ CS
  Microtub_bd  21 niRvfarvrpelesek.......akikfpe...........eekkkkkefsFdrvfeseseqeevf.eeisqlvqsaldgynvcifaygqTGsGKtyT 99 
                  ++Rv +r+rp +++e        +++   +             ++  k+f+Fd v+ +++ qe ++ +  s +v+s+l+gyn +ifaygqTG GKt+T
   KOO21004.1 545 TVRVVVRCRPLNKKELedgreqiVHM---DptngtctvtppGANEPPKNFTFDAVYAPNTRQEVLYkQSASSIVDSVLQGYNGTIFAYGQTGTGKTFT 639
                  69********9999877788655333...13346677777877899**************999887256799************************** PP

                  ...........ST-HCHHHHHHHHHHCCTSCCCCEEEEEEEEEEESS-EEETT CS
  Microtub_bd 100 meg...eeeeagmipraveeifetiselkekgwkyeielqfveiynekvqDlL 149
                  meg   +ee +g ipra+ +if  i++    + ++ ++++++eiyne+++DlL
   KOO21004.1 640 MEGvnhDEELKGIIPRAFMQIFAGIETSGGANREFLVRASYLEIYNEEIRDLL 692
                  ***98778889*****************************************8 PP

>> PIF1  PIF1-like helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.1   5.5e-06     0.025       8      39 ..     609     640 ..     600     649 .. 0.87

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 5.5e-06
                 HHHHHH......HCTS-EEEEESTTSSCHHHH CS
        PIF1   8 kvfdaiieavlnekgklfFvtGsgGtgKtflw 39 
                 + + +i+++vl+   +++F +G+ GtgKtf  
  KOO21004.1 609 QSASSIVDSVLQGYNGTIFAYGQTGTGKTFTM 640
                 456789************************76 PP

>> DoxX  DoxX
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.9   0.6      0.15   6.8e+02      44      70 ..      82     108 ..      61     111 .. 0.75
   2 ?   11.3   4.6   9.3e-05      0.41       8      76 ..     129     202 ..     128     221 .. 0.83

  Alignments for each domain:
  == domain 1  score: 0.9 bits;  conditional E-value: 0.15
        DoxX  44 laylaalvElvgglllllGlltRlaAl 70 
                 +  l + + +v+g+  ++G++t l A 
  KOO21004.1  82 AMPLGMQAAIVFGIIAAIGVGTALIAG 108
                 555666677899999999999998885 PP

  == domain 2  score: 11.3 bits;  conditional E-value: 9.3e-05
        DoxX   8 llgvlfiahGlqkltgfglegtaaslaalglpp.......pellaylaalvElvgglllllGlltRlaAlalavtl 76 
                 +lg++++a+G+  +t  +leg+++   + g          p + ++ +++vE++gg  +l+G l++la + l +tl
  KOO21004.1 129 ALGLIYLAAGIAHFT--ELEGFENITPPNGTWGwfytpfsPKVNVIWTGVVEIFGGSWMLFGALAPLAGFTLPATL 202
                 7999***********..88887777775554445555566***************************998876665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (892 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       522  (0.0291148); expected 358.6 (0.02)
Passed bias filter:                      418  (0.0233142); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.69u 0.25s 00:00:00.94 Elapsed: 00:00:00.43
# Mc/sec: 6183.36
//
Query:       KOO21005.1  [L=572]
Description: peptide chain release factor 2 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      7e-39  133.7   0.1    1.3e-38  132.9   0.1    1.4  1  PCRF      PCRF domain
    4.5e-34  116.9   0.2    7.9e-34  116.1   0.2    1.4  1  RF-1      RF-1 domain
    4.5e-10   39.7   0.0    5.2e-09   36.3   0.0    2.3  2  FKBP_C    FKBP-type peptidyl-prolyl cis-trans isomerase


Domain annotation for each model (and alignments):
>> PCRF  PCRF domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  132.9   0.1   2.1e-42   1.3e-38      32     193 .]     246     412 ..     229     412 .. 0.82

  Alignments for each domain:
  == domain 1  score: 132.9 bits;  conditional E-value: 2.1e-42
                 HHTHHHHHHHHHHHHHTTTHHH...HT.........-...S-..-GGGTHHHHHHHHHH..HHHHHT-..SSSTTSEEEEEEEE-SSTHHHHHHHHHHH CS
        PCRF  32 aeleeivealeeleealedleeakell.e....edee...laelaeeeleelekeleeleeelkklLlpkdendeknaileiraGaGGdeaalfaedLl 122
                 +e ++++e++ee+ +  +d++ a el+ e    e +e   l ++a+++l +l++ele++  e++ l+   +e+d ++a+l+++aG+GG +a++++++Ll
  KOO21005.1 246 EEHKATIEQAEEWLRSVDDAKVALELApElvadETQEavaLIDEARQKLGSLASELERW--EVRALMG--GEHDGCGAVLTLTAGSGGLDAMDWTAMLL 340
                 45566777777777777777777766632342222221113333455688899999999..9999999..***************************** PP

                 HHHHHHHHTT.T-EEEEEEEEESSS.SEEEEEEEEESTTHHHHHGGG-EEEEEEEE-TTSSS--EEEEEEEE CS
        PCRF 123 rmYtryaerk.gwkvevldaseeeagGikevtleiegegaYgkLkfEsGvHRvqRvpetesqgrihTStatV 193
                 rmYtr+ e + g++v ++++s  e  G+k++tl++eg++aYg L++E+G+HR++R ++++++++++TS+a V
  KOO21005.1 341 RMYTRWGEAQpGFRVALTEQSIGEEAGLKSATLHVEGPYAYGLLRAEHGTHRLVRFSPFNADNKRQTSFAGV 412
                 *******98769**********5555********************************************98 PP

>> RF-1  RF-1 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  116.1   0.2   1.3e-37   7.9e-34       4     116 .]     425     532 ..     422     532 .. 0.88

  Alignments for each domain:
  == domain 1  score: 116.1 bits;  conditional E-value: 1.3e-37
                 CCE--GGGEEEEEE---SSSSSSGCSSSCEEEEEETTTTEEEEEEECSSSHHHHHHHHHHHHHHHHHHHHHHHCCCCCHTTTTT-.S.-S---S--ECE CS
        RF-1   4 eieidekdleidtfrssGaGGQnVNktesaVrlthlptgvivvecqeeRsqekNrekAlerLkaklkekeleeekeeekkrrvkkekkkigtgssekiR 102
                 +i+i++kdl+++t+rs+GaGGQnVNk+e+aVr+ h+ptg + v+cq+eRsq++N+e Al +Lkakl    +++++++e+ ++++ ++ ++  g   +iR
  KOO21005.1 425 DIDIPDKDLDVSTMRSGGAGGQNVNKVETAVRIRHIPTG-LAVRCQQERSQQRNKEVALALLKAKL--LVIRQQQRAEDIAQIRGDRIEADYG--TQIR 518
                 589************************************.8*************************..5556666666777766744444455..5*** PP

                 EEECGCTTEEEETT CS
        RF-1 103 tynkkpqsrvkdhr 116
                 +y++ p+++vkd+r
  KOO21005.1 519 SYVLAPYKMVKDLR 532
                 ************98 PP

>> FKBP_C  FKBP-type peptidyl-prolyl cis-trans isomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.3   0.0   8.8e-13   5.2e-09       7      93 ..     158     244 ..     152     245 .. 0.85
   2 ?    0.5   0.0      0.13   7.6e+02      45      76 ..     350     386 ..     340     411 .. 0.75

  Alignments for each domain:
  == domain 1  score: 36.3 bits;  conditional E-value: 8.8e-13
                 TTCEEEEEEEEEETTSSEEEEHCCHTSEEEEETTSSS....SCHHHHHHHTTSBTT-EEEEEEEGGGTTTTTTBCTTTB.TTSEEEEEEEE CS
      FKBP_C   7 egdtVtvhykgkledgkvfdssrsrakplefkvGsgq....vikGfeealegmkvGekrtltippelaYgekglaggvippnatLvFeveL 93 
                  g++V +  k  ++d+ + d+    +kp+ f+ G+++    +++G e++++gmkvG+ r+lt+p +la   kgl+ + ++++  L+++ve+
  KOO21005.1 158 MGSIVGIRAKVSIADKVLYDTA--GEKPIAFRYGKRPfenvLCEGVEQGVKGMKVGGVRELTVPASLA--PKGLQAQLEAAGRPLIYTVEV 244
                 5788888889999888888888..***********653335778*********************998..78888888***********97 PP

  == domain 2  score: 0.5 bits;  conditional E-value: 0.13
                 CHHHHHHHTTSBTT-E.....EEEEEEGGGTTTTTTB CS
      FKBP_C  45 ikGfeealegmkvGek.....rtltippelaYgekgl 76 
                  +Gf  al++ + Ge+     +tl+++ ++aYg   +
  KOO21005.1 350 QPGFRVALTEQSIGEEaglksATLHVEGPYAYGLLRA 386
                 5788888888888887222235888999999986555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (572 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       524  (0.0292264); expected 358.6 (0.02)
Passed bias filter:                      385  (0.0214736); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.56u 0.25s 00:00:00.81 Elapsed: 00:00:00.41
# Mc/sec: 4180.56
//
Query:       KOO21006.1  [L=993]
Description: p-type ATPase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.9e-38  130.8   0.3    2.1e-14   54.2   0.0    5.9  5  Filamin     Filamin/ABP280 repeat
    1.3e-07   31.8   5.4    0.00072   19.8   0.6    4.4  4  Invasin_D3  Invasin, domain 3
    0.00072   20.1   1.2        7.1    7.3   0.0    5.2  5  YtkA        YtkA-like


Domain annotation for each model (and alignments):
>> Filamin  Filamin/ABP280 repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.2   0.0   3.5e-18   2.1e-14       3     103 .]     117     209 ..     115     209 .. 0.90
   2 !   25.0   0.2   4.4e-09   2.6e-05       4      97 ..     219     532 ..     216     536 .. 0.85
   3 !   21.1   0.0   7.1e-08   0.00043       3      90 ..     547     639 ..     545     668 .. 0.79
   4 !   13.5   0.0   1.6e-05     0.096      17     103 .]     703     796 ..     687     796 .. 0.75
   5 !    9.3   0.0   0.00032       1.9      20      94 ..     822     901 ..     803     907 .. 0.62

  Alignments for each domain:
  == domain 1  score: 54.2 bits;  conditional E-value: 3.5e-18
                 STTSEEEESGGGTEEETTS-EEEEEEESSSTSCCCSTTS..EEEEE..ESSTS.....EEEEEEEE-SSSEEEEEE--SSSCEEEEEEEETTCE-TTSS CS
     Filamin   3 dpskskvnGpGieasvagesltFtvytkdakgeksevggdelqvrivtgsphgaatkssvkievvdnedgtytvsYtpeepgtyrvsvkldgkhiggsP 101
                  +  +kv G+Gi ++    ++ F +++ d  g+k++vggd + v i  ++ +       v ++++d++dgty+v+++p ++g y + +++ g + +gsP
  KOO21006.1 117 CAVECKVHGKGIIEAAPRLPVDFFIDAYDFTGRKRKVGGDAFFVAI--RGAS------TVRARIEDKGDGTYRVEWKPPQSGSYAIAISYFGMPLQGSP 207
                 6789********5556789***************************..4442......46678************************************ PP

                 EE CS
     Filamin 102 fd 103
                 ++
  KOO21006.1 208 YK 209
                 96 PP

  == domain 2  score: 25.0 bits;  conditional E-value: 4.4e-09
                 TTSEEEESGGGTEEETTS-EEEEEEESSSTSCCCSTTS..EEEEE.....................................ESSTS............ CS
     Filamin   4 pskskvnGpGieasvagesltFtvytkdakgeksevggdelqvriv...................................tgsphgaatk........ 59 
                 + +++++G+ +  +va    +F v+ kd  g+ + +    ++++++                                    +s      +        
  KOO21006.1 219 APNCRALGDALTMAVARNVQSFFVQFKDRLGN-VAH---AVDLDVYvepmpieglaagtvanpdlltklpepppvveaksgLES------Pkrdskkvg 307
                 5689*******999999999*********999.433...344444455999999999998888888888888888655555333......244455588 PP

                 ................................................................................................... CS
     Filamin  60 ................................................................................................... 59 
                                                                                                                    
  KOO21006.1 308 dkgakkeegdkeggakkdggatnrkatdegaskegrkegskpqpaapappssalkegskpqpssapapnkkevgkpqptaatstplpdnkegskpqpaa 406
                 888888889999999999999999999999999****************************************************************** PP

                 .........................................................................................EEEEEEEE-S CS
     Filamin  60 ...........................................................................s.............svkievvdne 70 
                                                                                            +             sv++ v+dn+
  KOO21006.1 407 tappsekkegdkpkpvekkegsgskgpsgkahaastrlpktvvvggvgmaagfgcgiaistadimgnkcitggaiVtgdcfnadgsrcdSVQTTVRDNG 505
                 ***********9999999999999999999999999999998888888888888888777777777666666655055566666778889999****** PP

                 SSEEEEEE--SSSCEEEEEEEETTCE- CS
     Filamin  71 dgtytvsYtpeepgtyrvsvkldgkhi 97 
                 dgty  +++ +++gty+  +k+ g++i
  KOO21006.1 506 DGTYYLHWNSTQAGTYNAAIKIYGEQI 532
                 **********************99998 PP

  == domain 3  score: 21.1 bits;  conditional E-value: 7.1e-08
                 STTSEEEESGGGTEEETTS-EEEEEEESSSTSCCCSTTS....EEEEE.........ESSTS.....EEEEEEEE-SSSEEEEEE--SSSCEEEEEE CS
     Filamin   3 dpskskvnGpGieasvagesltFtvytkdakgeksevgg..delqvriv.......tgsphgaatkssvkievvdnedgtytvsYtpeepgtyrvsv 90 
                 d  ks+++G G+ +++ag  ++F+++  d++g+     g  +++++          +++++++ +    ++ ++d+e+g y+ s+ p + gt+ ++v
  KOO21006.1 547 DMLKSQISGVGLSRATAGADTKFQIKFFDQYGNSALLDGkqNKIGM--AllkagekIKDEKSKPY--LHTMACIDEEEGLYEFSFIPFKDGTFDLHV 639
                 677999***************************7766552244444..34466655555555533..35788**********************999 PP

  == domain 4  score: 13.5 bits;  conditional E-value: 1.6e-05
                 E....ETTS-EEEEEEESSSTSCCCSTTS..EEEEE..ESSTS...........EEEEEEEE-SSSEEEEEE--SSSCEEEEEEEETTCE-TTSSEE CS
     Filamin  17 s....vagesltFtvytkdakgeksevggdelqvrivtgsphgaatks......svkievvdnedgtytvsYtpeepgtyrvsvkldgkhiggsPfd 103
                      vag+ ++F  +  d  g+    g+  l+v+i  + p g++++       +++   v+ +  t++++  ++ +g++ v++kl+g +i gsP +
  KOO21006.1 703 DnsciVAGDAVVFRPQICDDLGNVASLGEGMLDVEI--EYPAGNKDNLsntnalKFT-TLVKGGITTHDIRHDATHAGEHFVRLKLNGHEISGSPVH 796
                 344567788889999999999998888888888999..6666664442333344322.26666678*****************************75 PP

  == domain 5  score: 9.3 bits;  conditional E-value: 0.00032
                 TS-EEEEEEESSSTSCCCSTTS..EEEEE............ESSTS.....EEEEEEEE-SSSEEEEEE--SS.SCEEEEEEEETT CS
     Filamin  20 gesltFtvytkdakgeksevggdelqvriv..........tgsphgaatkssvkievvdnedgtytvsYtpee.pgtyrvsvkldg 94 
                 ++ +t+  +t d  g+++++gg     r++          t  p+      +  +evvd+++g y+v+ t+ +   t+rv + +d+
  KOO21006.1 822 NKMATIVLKTYDRFGNPLTKGGLAGSARLQlvksgvsdltTLMPN------NNSVEVVDQNNGEYNVNVTLIKiTATVRVIINMDK 901
                 466677777778888888888844444443223333333233333......44589************976651456666666655 PP

>> Invasin_D3  Invasin, domain 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.1   0.0    0.0023        14      36      82 ..     153     200 ..     141     210 .. 0.73
   2 !   19.8   0.6   1.2e-07   0.00072      30      94 ..     469     542 ..     463     544 .. 0.76
   3 ?   -1.9   0.0       0.7   4.2e+03      57      82 ..     760     787 ..     700     797 .. 0.61
   4 !    4.6   0.2    0.0066        40      22      74 ..     825     893 ..     819     905 .. 0.60

  Alignments for each domain:
  == domain 1  score: 6.1 bits;  conditional E-value: 0.0023
  Invasin_D3  36 vsgltvtfsttsagtls.avtdngdGtytatLtattagtatitptvnG 82 
                 v+g++  ++ + a t+   ++d+gdGty ++ +  ++g++ i  ++ G
  KOO21006.1 153 VGGDAFFVAIRGASTVRaRIEDKGDGTYRVEWKPPQSGSYAIAISYFG 200
                 667764444443334442689******************999988777 PP

  == domain 2  score: 19.8 bits;  conditional E-value: 1.2e-07
  Invasin_D3  30 Dangnp.vsgltvtfstt..sag.....tlsavtdngdGtytatLtattagtatitptvnG.vaiaatatvtlt 94 
                 D  gn  ++g +++      ++g     + ++v+dngdGty     +t+agt++   ++ G ++ ++++++tl 
  KOO21006.1 469 DIMGNKcITGGAIVTGDCfnADGsrcdsVQTTVRDNGDGTYYLHWNSTQAGTYNAAIKIYGeQILGTSQQITLK 542
                 6666666666554433112334445565678999***************************9999999999985 PP

  == domain 3  score: -1.9 bits;  conditional E-value: 0.7
  Invasin_D3  57 ngdGtytatLta..ttagtatitptvnG 82 
                  + G+ t  +    t ag+  +  ++nG
  KOO21006.1 760 VKGGITTHDIRHdaTHAGEHFVRLKLNG 787
                 3334555544433255677667777776 PP

  == domain 4  score: 4.6 bits;  conditional E-value: 0.0066
  Invasin_D3  22 stltvtlkDangnp.....vsglt.vtfsttsag.....tls......avtdngdGtytatLta.ttagta 74 
                 +t+ ++  D +gnp     ++g +  ++   ++g     tl       +v d+++G y + +t  + + t+
  KOO21006.1 825 ATIVLKTYDRFGNPltkggLAGSArLQLV--KSGvsdltTLMpnnnsvEVVDQNNGEYNVNVTLiKITATV 893
                 67889999******754443332223333..4443433322234444456699999999999874444444 PP

>> YtkA  YtkA-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.3   0.0    0.0012       7.1      56      85 ..     167     196 ..     162     197 .. 0.86
   2 !    4.5   0.0    0.0091        54      46      84 ..     488     524 ..     467     526 .. 0.81
   3 ?    0.2   0.0      0.19   1.2e+03      53      84 ..     608     638 ..     599     639 .. 0.76
   4 ?    0.7   0.0      0.14   8.4e+02      55      75 ..     866     886 ..     852     888 .. 0.81
   5 ?   -1.8   0.3      0.85   5.1e+03      18      54 ..     948     986 ..     940     993 .] 0.65

  Alignments for each domain:
  == domain 1  score: 7.3 bits;  conditional E-value: 0.0012
        YtkA  56 ttkvelkesedGvYeaevnfsmeGtWqvql 85 
                 t+ +  ++++dG Y++e + +++G + + +
  KOO21006.1 167 TVRARIEDKGDGTYRVEWKPPQSGSYAIAI 196
                 566778899*****************9965 PP

  == domain 2  score: 4.5 bits;  conditional E-value: 0.0091
        YtkA  46 mpameGmeemttkvelkesedGvYeaevnfsmeGtWqvq 84 
                     +G  + ++  ++ + +dG Y +  n +++Gt++  
  KOO21006.1 488 NA--DGSRCDSVQTTVRDNGDGTYYLHWNSTQAGTYNAA 524
                 44..57888888889999******************865 PP

  == domain 3  score: 0.2 bits;  conditional E-value: 0.19
        YtkA  53 eemttkvelkesedGvYeaevnfsmeGtWqvq 84 
                 ++ +t++   e e G Ye+  +  ++Gt  ++
  KOO21006.1 608 PYLHTMACIDE-EEGLYEFSFIPFKDGTFDLH 638
                 56677888888.*******9877788887665 PP

  == domain 4  score: 0.7 bits;  conditional E-value: 0.14
        YtkA  55 mttkvelkesedGvYeaevnf 75 
                 ++  ve+ ++++G+Y ++v++
  KOO21006.1 866 NNNSVEVVDQNNGEYNVNVTL 886
                 4678999999******99986 PP

  == domain 5  score: -1.8 bits;  conditional E-value: 0.85
        YtkA  18 kagenti.vvtvtqggkpVedad.vkvefwmpameGmee 54 
                 kag++ + +++v ++g+ V  ++ v v ++  a +G+++
  KOO21006.1 948 KAGQEIVsMIQVAKEGDDVRPKNaVAVAIDAFAAAGQAK 986
                 566666546689999999986655777666666556664 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (993 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       678  (0.0378158); expected 358.6 (0.02)
Passed bias filter:                      444  (0.0247643); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.74u 0.29s 00:00:01.03 Elapsed: 00:00:00.45
# Mc/sec: 6583.75
//
Query:       KOO21007.1  [L=106]
Description: hypothetical protein Ctob_001171 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (106 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       250  (0.0139439); expected 358.6 (0.02)
Passed bias filter:                      211  (0.0117686); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.26s 00:00:00.62 Elapsed: 00:00:00.41
# Mc/sec: 772.26
//
Query:       KOO21008.1  [L=1000]
Description: putative importin-7-like protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.8e-12   47.0   0.0    7.8e-12   44.9   0.0    2.2  2  IBN_N     Importin-beta N-terminal domain
    2.1e-06   26.9   0.0    2.8e-05   23.1   0.0    2.2  2  Cse1      Cse1
     0.0034   17.4   0.0      0.032   14.3   0.0    2.5  2  Xpo1      Exportin 1-like protein
  ------ inclusion threshold ------
       0.13   12.8   8.9        0.9   10.1   0.1    5.3  6  HEAT_EZ   HEAT-like repeat
       0.42   11.0   3.2        3.6    8.1   0.0    4.5  4  HEAT      HEAT repeat


Domain annotation for each model (and alignments):
>> IBN_N  Importin-beta N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.9   0.0   2.2e-15   7.8e-12       1      73 [.      26     111 ..      26     112 .. 0.90
   2 ?   -3.7   0.0       3.2   1.2e+04      55      71 ..     956     972 ..     951     975 .. 0.78

  Alignments for each domain:
  == domain 1  score: 44.9 bits;  conditional E-value: 2.2e-15
                 HHHHHHHHHCSTCHHHHHHHHHHCTTSH..HHHHHHHHHHHHHHHHHHGGSCCCHC...........GSXHHHHHHHHHHHHHHHH CS
       IBN_N   1 AekqLkqlekqpgflsallqilansese..levRqlAalyLknlitkhWsdeeekq...........slpseekeqIrnnllnllg 73 
                 Ae++Lk  + qpg+++ l++++++ + +  + +Rq+A++y+kn+i+++W ++++ +            l+++ k+++rnnl ++l+
  KOO21008.1  26 AEEALKLSQDQPGHVVVLFRLAVDPAIPaePALRQSAVIYMKNMIHRRWEPRDPPKylrekgeqsspGLSEDGKALVRNNLFQALA 111
                 8***********************88886349******************6666667777777889****************9985 PP

  == domain 2  score: -3.7 bits;  conditional E-value: 3.2
                 GSXHHHHHHHHHHHHHH CS
       IBN_N  55 slpseekeqIrnnllnl 71 
                 ++++ee + +r++l ++
  KOO21008.1 956 QISAEENAALRSYLQEA 972
                 89999999999999766 PP

>> Cse1  Cse1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.9   0.0     0.045   1.6e+02      57     129 ..     212     288 ..     184     296 .. 0.82
   2 !   23.1   0.0   7.9e-09   2.8e-05     184     251 ..     363     431 ..     338     448 .. 0.79

  Alignments for each domain:
  == domain 1  score: 0.9 bits;  conditional E-value: 0.045
                 HHHHHHHHHHHHSSS--HHH..HHTHHHHHHHHHHHHH--SGGG-TT-SSS--HHH..HHHHHHHHHHHHHHHH-HH CS
        Cse1  57 llllvklfydlnsqdlPeff..Ednlkelmealhkylsldnplletdddeeasvle..klkasicelvqlyvekyee 129
                  ll+ k+ ++ +   lP+++    nl  + e+++ +l+   p    +d++ea      k+k+ i+ +++  +++y +
  KOO21008.1 212 ALLIGKIMWSTTQLGLPPWLlqPANLGPWFETMLALLEQPLPEGCPTDEDEAIKWApfKVKKRIAAIFHRLIQRYGN 288
                 578889999999999999872246999**********9999988855555555443249****************76 PP

  == domain 2  score: 23.1 bits;  conditional E-value: 7.9e-09
                 HHHHHHHHTHHHHHS--HHHHHHHHHSHHHHHHHHSCS.S---SHHHHHHHHHHHHHHHHHHHHHHHHH CS
        Cse1 184 vlkeiiekvvlpnvtlResDeElFEdepieyirrDlEG.sdvdtRrraatdllkeLkekfeakvtevvl 251
                  l  +  +++lp +++ ++D El+E++p ey+r++++   d+ + r aat+ll  L++k  +  ++ ++
  KOO21008.1 363 QLGALFSEMMLPLLSFSQKDSELWEEDPHEYVRKEFDMiEDFYSPRTAATNLLTALTKKRGKDCLHGIV 431
                 57788999**************************9986379***************9998776655444 PP

>> Xpo1  Exportin 1-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.3   0.0     9e-06     0.032       1      38 [.     114     151 ..     114     198 .. 0.86
   2 ?   -0.2   0.0      0.27   9.5e+02     125     138 ..     564     579 ..     545     672 .. 0.73

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 9e-06
                 THHHHHHHHHHHHHHHHHHTTTTSTTHHHHHHHHHCT. CS
        Xpo1   1 pkflrnklaealaelflqeypnnWpsffddllsllsss 38 
                 p+ +r++l ++l +++  +yp++Wps+++++++ ls+ 
  KOO21008.1 114 PPQIRSQLGLCLRTIAFTDYPERWPSLLPSIVAGLSAT 151
                 6789****************************888775 PP

  == domain 2  score: -0.2 bits;  conditional E-value: 0.27
                 T..SCHHHHHHHHCCS CS
        Xpo1 125 n..npllnllfqlLsd 138
                 +  ++ll+llf+lL++
  KOO21008.1 564 QvlPQLLELLFSLLKE 579
                 3233355555554422 PP

>> HEAT_EZ  HEAT-like repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.5   0.0      0.54   1.9e+03       2      15 ..     451     468 ..     450     490 .. 0.75
   2 ?   10.1   0.1   0.00025       0.9       3      54 ..     496     551 ..     494     552 .. 0.77
   3 ?    3.5   0.7     0.029     1e+02      16      38 ..     552     574 ..     550     578 .. 0.84
   4 ?   -2.9   0.0       3.1   1.1e+04      14      34 ..     592     612 ..     586     621 .. 0.76
   5 ?   -2.3   0.1         2   7.1e+03      14      34 ..     648     668 ..     637     686 .. 0.68
   6 ?   -2.6   0.0       2.5   8.9e+03      25      36 ..     787     798 ..     781     799 .. 0.80

  Alignments for each domain:
  == domain 1  score: -0.5 bits;  conditional E-value: 0.54
     HEAT_EZ   2 rvRraAawaLGr....la 15 
                 r++ +A++a+G+    la
  KOO21008.1 451 RLKDGALLAIGTlhkdLA 468
                 78889******8666655 PP

  == domain 2  score: 10.1 bits;  conditional E-value: 0.00025
     HEAT_EZ   3 vRraAawaLGr.........laggepellqplvpeilpaLlalLnddsd.eVRaaAagaLgn 54 
                 +R+ A+w+ G           a  epe+l ++ ++ + ++      d++ +VR +A +a+++
  KOO21008.1 496 LRARAIWTYGQfarsifregRA-TEPEHLTLAFQRFMECMR-----DPAlPVRVNASIAIEA 551
                 5666777776655566555533.47999999**********.....***999*******986 PP

  == domain 3  score: 3.5 bits;  conditional E-value: 0.029
     HEAT_EZ  16 ggepellqplvpeilpaLlalLn 38 
                 ++ +e ++++v ++lp+Ll lL 
  KOO21008.1 552 FVQGEVVPQAVVQVLPQLLELLF 574
                 67788999999999999999885 PP

  == domain 4  score: -2.9 bits;  conditional E-value: 3.1
     HEAT_EZ  14 laggepellqplvpeilpaLl 34 
                 l +  +e++ p+  +++ aL+
  KOO21008.1 592 LIEKHGEQMVPYAVQVVTALC 612
                 556778888999999999987 PP

  == domain 5  score: -2.3 bits;  conditional E-value: 2
     HEAT_EZ  14 laggepellqplvpeilpaLl 34 
                 + +g pe  + l   +lp+L+
  KOO21008.1 648 AVAGTPEVYAALEAPLLPLLA 668
                 555777777777777777776 PP

  == domain 6  score: -2.6 bits;  conditional E-value: 2.5
     HEAT_EZ  25 lvpeilpaLlal 36 
                  +++++p+L+a+
  KOO21008.1 787 RIDALMPELVAM 798
                 57899****976 PP

>> HEAT  HEAT repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.0       4.3   1.6e+04      17      29 ..     408     420 ..     408     421 .. 0.86
   2 ?   -2.3   0.0       2.1   7.6e+03      15      29 ..     495     509 ..     486     511 .. 0.80
   3 ?    8.1   0.0     0.001       3.6       4      29 ..     529     554 ..     527     555 .. 0.91
   4 ?   -4.3   0.3         5   1.8e+04       1       9 [.     565     573 ..     565     574 .. 0.86

  Alignments for each domain:
  == domain 1  score: -3.2 bits;  conditional E-value: 4.3
                 HHHHHHHHHHHHH CS
        HEAT  17 ReaAakaLgalae 29 
                 R aA + L+al +
  KOO21008.1 408 RTAATNLLTALTK 420
                 8899999999986 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 2.1
                 HHHHHHHHHHHHHHH CS
        HEAT  15 eVReaAakaLgalae 29 
                 + R+ A+++ g++a+
  KOO21008.1 495 FLRARAIWTYGQFAR 509
                 67999******9997 PP

  == domain 3  score: 8.1 bits;  conditional E-value: 0.001
                 HHHHHHT-SSHHHHHHHHHHHHHHHH CS
        HEAT   4 lllkllsDpspeVReaAakaLgalae 29 
                  ++++++Dp+  VR +A  a+ a+++
  KOO21008.1 529 RFMECMRDPALPVRVNASIAIEAFVQ 554
                 689*******************9998 PP

  == domain 4  score: -4.3 bits;  conditional E-value: 5
                 HHHHHHHHH CS
        HEAT   1 llPlllkll 9  
                 +lP ll+ll
  KOO21008.1 565 VLPQLLELL 573
                 699**9997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1000 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       592  (0.0330191); expected 358.6 (0.02)
Passed bias filter:                      495  (0.0276089); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.75u 0.26s 00:00:01.01 Elapsed: 00:00:00.43
# Mc/sec: 6981.75
//
Query:       KOO21009.1  [L=302]
Description: hypothetical protein Ctob_001178 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.099   12.5   0.1       0.14   12.1   0.1    1.2  1  FliP      FliP family


Domain annotation for each model (and alignments):
>> FliP  FliP family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.1   7.6e-06      0.14      37     109 ..     111     182 ..      98     213 .. 0.80

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 7.6e-06
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT CS
        FliP  37 vppnqvliglallltlfvmaPvleeineeavkplleeeiteeealekakeplrefllkqtrekdlalflelae 109
                 +pp + ligl +l  + v aP ++++ ++ +k  +++ ++ ++ +++++e+ +ef++k+t + + + ++++  
  KOO21009.1 111 LPPMLFLIGLKVLGYFLVRAPFMRSTRDRSMKL-VRTALKRKANVRRMTEEGKEFVVKRTAKATGQDMAQAIV 182
                 6999********9999999****9999998775.7779********************999887766665543 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (302 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       685  (0.0382063); expected 358.6 (0.02)
Passed bias filter:                      452  (0.0252106); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.26s 00:00:00.71 Elapsed: 00:00:00.41
# Mc/sec: 2223.20
//
Query:       KOO21010.1  [L=86]
Description: hypothetical protein Ctob_002056 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    3.7e-05   23.6   0.0    5.1e-05   23.1   0.0    1.3  1  TFIID_30kDa  Transcription initiation factor TFIID 23-30kDa s


Domain annotation for each model (and alignments):
>> TFIID_30kDa  Transcription initiation factor TFIID 23-30kDa subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.1   0.0   2.8e-09   5.1e-05       1      24 [.      33      56 ..      33      68 .. 0.87

  Alignments for each domain:
  == domain 1  score: 23.1 bits;  conditional E-value: 2.8e-09
  TFIID_30kDa  1 PiIPDavtayyLekaGletsDprl 24
                 Pi+PDavt+yyL  +G++ +  rl
   KOO21010.1 33 PIVPDAVTQYYLGLSGYQQQKGRL 56
                 9***************99765554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (86 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       407  (0.0227007); expected 358.6 (0.02)
Passed bias filter:                      355  (0.0198003); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.24s 00:00:00.60 Elapsed: 00:00:00.39
# Mc/sec: 664.52
//
Query:       KOO21011.1  [L=601]
Description: hypothetical protein Ctob_002053 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (601 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       632  (0.0352502); expected 358.6 (0.02)
Passed bias filter:                      465  (0.0259356); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.59u 0.25s 00:00:00.84 Elapsed: 00:00:00.44
# Mc/sec: 4129.45
//
Query:       KOO21012.1  [L=80]
Description: hypothetical protein Ctob_002057 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (80 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       529  (0.0295053); expected 358.6 (0.02)
Passed bias filter:                      219  (0.0122148); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.22s 00:00:00.56 Elapsed: 00:00:00.38
# Mc/sec: 629.89
//
Query:       KOO21013.1  [L=217]
Description: er lumen protein retaining receptor [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.7e-53  180.3   2.8    5.8e-53  179.7   2.8    1.3  1  ER_lumen_recept  ER lumen protein retaining receptor


Domain annotation for each model (and alignments):
>> ER_lumen_recept  ER lumen protein retaining receptor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  179.7   2.8   3.2e-57   5.8e-53       1     147 []      28     171 ..      28     171 .. 0.98

  Alignments for each domain:
  == domain 1  score: 179.7 bits;  conditional E-value: 3.2e-57
  ER_lumen_recept   1 svaGlSlktqilyalvfltryldlflylreeislyntlmkialillsiyiiylilvk..fketyekekDtfklellivpslllallfhpgsskt 92 
                      s+aG+Sl+tq ly++vf++ryldlf++++   slyn+++k+++i++s++i+y+i++k   k+t++ e D+f +++li p+++ +ll+++  ++t
       KOO21013.1  28 SAAGISLRTQELYMIVFCSRYLDLFWNFS---SLYNSFLKVVFIACSSAIVYIIRFKspQKDTWNPELDNFPIQYLIGPCAVAGLLINQ--DWT 116
                      79***********************9998...9************************999****************************9..*** PP

  ER_lumen_recept  93 llevlwtfsiiLesvAilPQlillqktgevesltshyvfalglyRalyllnWivr 147
                       +e++w+fsi+Le+vAilPQl+llqk+geve+ltshyv+alg+yR lyl+nW++r
       KOO21013.1 117 PFEMIWAFSIYLEAVAILPQLFLLQKQGEVENLTSHYVAALGAYRGLYLMNWVYR 171
                      *****************************************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (217 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       412  (0.0229795); expected 358.6 (0.02)
Passed bias filter:                      260  (0.0145016); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.25s 00:00:00.63 Elapsed: 00:00:00.39
# Mc/sec: 1687.98
//
Query:       KOO21014.1  [L=352]
Description: hypothetical protein Ctob_002054 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.6e-15   55.9   1.4    5.1e-15   55.7   0.1    1.7  2  Enkurin   Calmodulin-binding


Domain annotation for each model (and alignments):
>> Enkurin  Calmodulin-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.1      0.35   6.3e+03      19      22 ..      60      63 ..      45      82 .. 0.52
   2 !   55.7   0.1   2.8e-19   5.1e-15       1      97 [.     200     295 ..     200     296 .. 0.91

  Alignments for each domain:
  == domain 1  score: -2.3 bits;  conditional E-value: 0.35
     Enkurin 19 eeee 22
                e+ +
  KOO21014.1 60 EQRR 63
                1111 PP

  == domain 2  score: 55.7 bits;  conditional E-value: 2.8e-19
     Enkurin   1 GkvPkYLkkrkkeleeeeeeeekeeaekkeappgmrllseeerqellegLkkkweelnkeyqslpllidtlskrqrKeklEkeLkqlEkdikllekk 97 
                 G+ P YL  rk el+++ ee ++++++ +e+p+g   l+e er ++l   ++ +++l+ e+ ++p++idt + r++ e l  +L+qlE++ k ++++
  KOO21014.1 200 GRLPPYLLDRKLELAQQAEERAARARP-RECPEGTHFLEELERVRVLGLVRDGQRKLHAELDKMPFVIDTHGLRAKHEALSLQLTQLEAAEKAFSRR 295
                 899*********777776666665555.569***************************************************************996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (352 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       523  (0.0291706); expected 358.6 (0.02)
Passed bias filter:                      291  (0.0162307); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.25s 00:00:00.73 Elapsed: 00:00:00.42
# Mc/sec: 2541.28
//
Query:       KOO21015.1  [L=250]
Description: hypothetical protein Ctob_002059 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (250 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       339  (0.0189079); expected 358.6 (0.02)
Passed bias filter:                      327  (0.0182386); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.42u 0.24s 00:00:00.65 Elapsed: 00:00:00.40
# Mc/sec: 1861.85
//
Query:       KOO21016.1  [L=617]
Description: vacuolar transporter chaperone 3 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.2e-09   36.2   0.6      2e-05   24.7   0.0    4.1  5  SPX       SPX domain
     0.0043   17.1  12.4     0.0043   17.1  12.4    1.9  3  Zn_clus   Fungal Zn(2)-Cys(6) binuclear cluster domain


Domain annotation for each model (and alignments):
>> SPX  SPX domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.1   0.5   2.3e-07    0.0021       1      30 [.       1      30 [.       1      36 [. 0.97
   2 ?    0.1   0.0     0.068   6.1e+02     183     221 ..      43      81 ..      31      96 .. 0.85
   3 !   24.7   0.0   2.2e-09     2e-05     350     383 ..     108     141 ..     106     142 .. 0.89
   4 ?   -3.2   0.7      0.67     6e+03     123     144 ..     184     214 ..     170     238 .. 0.37
   5 ?    0.7   0.7     0.044   3.9e+02     114     146 ..     549     579 ..     493     598 .. 0.56

  Alignments for each domain:
  == domain 1  score: 18.1 bits;  conditional E-value: 2.3e-07
         SPX  1 MKFakeLeenlvpEWrdaYldYkqLKKlIk 30
                MKF+k L +     W+  Y+ YkqLKKl+k
  KOO21016.1  1 MKFGKRLLAAQWGPWQGIYVPYKQLKKLLK 30
                ****************************99 PP

  == domain 2  score: 0.1 bits;  conditional E-value: 0.068
         SPX 183 ekeFferLdseLnkvetFykakeeefterlesLrkqlea 221
                 e  F+++  +  + +++F++++ + + er+ +L   +++
  KOO21016.1  43 EGSFVSMFLKSIQAIDEFFESQMTLLGERTRDLGATVDE 81 
                 66799999999**********************988876 PP

  == domain 3  score: 24.7 bits;  conditional E-value: 2.2e-09
         SPX 350 LKsYqeLNrtAFrKIlKKfDKvtaltaskrymke 383
                 L +Y eLN  A+rKI+KK+DK +  ++s  ++ +
  KOO21016.1 108 LRNYVELNLQAVRKIMKKHDKLSPVRMSGALIAF 141
                 789******************9999888877766 PP

  == domain 4  score: -3.2 bits;  conditional E-value: 0.67
         SPX 123 ssssddssesnpa.........dssssssss 144
                 +++s++  +++ a         ++ ++ ++ 
  KOO21016.1 184 ATQSASAAHADAApvsasasigSTRTTPPHM 214
                 2222222222211111111111222222222 PP

  == domain 5  score: 0.7 bits;  conditional E-value: 0.044
         SPX 114 vssppsansssssddssesnpadsssssssses 146
                 ++++p++ ++sss++ ++    +s+ +s+ + +
  KOO21016.1 549 QPPHPNDVHASSSSHARSRT--TSNATSHTTPN 579
                 33333333322222222222..11111111111 PP

>> Zn_clus  Fungal Zn(2)-Cys(6) binuclear cluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.9   0.1       1.8   1.6e+04      20      24 ..     241     245 ..     237     246 .. 0.73
   2 !   17.1  12.4   4.8e-07    0.0043       1      39 [.     276     311 ..     276     313 .. 0.90
   3 ?   -3.4   0.3       1.3   1.1e+04      12      21 ..     358     367 ..     357     368 .. 0.59

  Alignments for each domain:
  == domain 1  score: -3.9 bits;  conditional E-value: 1.8
                 -HHHH CS
     Zn_clus  20 CsnCk 24 
                 Cs C 
  KOO21016.1 241 CSGCD 245
                 88885 PP

  == domain 2  score: 17.1 bits;  conditional E-value: 4.8e-07
                 SS-HHHHHCT---STSSSS-HHHHHCTHHHCCCCTCCCE CS
     Zn_clus   1 haCdnCrkkKvKCdakkPaCsnCkklnleCtfysesskr 39 
                 +aC +C++ K+ C +  P C++C++l++ C+  +e++kr
  KOO21016.1 276 QACVECHRAKSACQG-YP-CTRCVRLGKACV-MREKRKR 311
                 69***********75.8*.************.8888877 PP

  == domain 3  score: -3.4 bits;  conditional E-value: 1.3
                 --STSSSS-H CS
     Zn_clus  12 KCdakkPaCs 21 
                 +C+   P C 
  KOO21016.1 358 RCESSVPPCL 367
                 6777666565 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (617 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       731  (0.0407719); expected 358.6 (0.02)
Passed bias filter:                      399  (0.0222544); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.57u 0.28s 00:00:00.85 Elapsed: 00:00:00.42
# Mc/sec: 4441.34
//
Query:       KOO21017.1  [L=309]
Description: hypothetical protein Ctob_002063 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (309 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1180  (0.0658152); expected 358.6 (0.02)
Passed bias filter:                      534  (0.0297841); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.44u 0.25s 00:00:00.69 Elapsed: 00:00:00.38
# Mc/sec: 2467.99
//
Query:       KOO21018.1  [L=297]
Description: hypothetical protein Ctob_002061 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    0.00033   21.4   6.2        2.9    8.9   0.0    4.8  5  WD40      WD domain, G-beta repeat
  ------ inclusion threshold ------
       0.05   12.3   0.0      0.068   11.8   0.0    1.1  1  Nup160    Nucleoporin Nup120/160


Domain annotation for each model (and alignments):
>> WD40  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.9   0.0   0.00032       2.9      12      37 ..       7      32 ..       2      33 .. 0.80
   2 ?    3.3   0.0     0.019   1.7e+02       6      31 ..      50      79 ..      45      85 .. 0.73
   3 !    5.9   0.0     0.003        27      18      38 .]     129     149 ..     119     149 .. 0.79
   4 ?    2.5   0.5     0.034     3e+02       3      29 ..     155     188 ..     153     195 .. 0.70
   5 ?   -2.8   0.0       1.6   1.4e+04      17      26 ..     216     225 ..     203     232 .. 0.70

  Alignments for each domain:
  == domain 1  score: 8.9 bits;  conditional E-value: 0.00032
                SEEEEEEETTSSEEEEEETTSEEEEE CS
        WD40 12 svtslafspdgawlasGsdDgtvriW 37
                sv++laf+p+g+ l+ G+  g +++W
  KOO21018.1  7 SVNALAFDPSGTHLVGGTGLGRLHVW 32
                59************966447777777 PP

  == domain 2  score: 3.3 bits;  conditional E-value: 0.019
                EEESS.SSEEEEE...EETTSSE.EEEEETT CS
        WD40  6 tltGH.ssvtsla...fspdgaw.lasGsdD 31
                + ++H +s+++l    +s+ g++ l+sG  D
  KOO21018.1 50 SVRAHgCSIYALElkpTSSTGRLmLLSGA-D 79
                4679*888****97776666666656998.7 PP

  == domain 3  score: 5.9 bits;  conditional E-value: 0.003
                 EETTSSEEEEEETTSEEEEEE CS
        WD40  18 fspdgawlasGsdDgtvriWd 38 
                 ++  +a l s+s Dg+ ++Wd
  KOO21018.1 129 VDAASAHLYSASGDGNAYVWD 149
                 5666777888877*******9 PP

  == domain 4  score: 2.5 bits;  conditional E-value: 0.034
                 EEEEEE....SSSS...EEEEEEETTSSEEEEE.E CS
        WD40   3 clrtlt....GHss...vtslafspdgawlasG.s 29 
                 c+ t+t    G  +     ++a++   +wl++G s
  KOO21018.1 155 CVATYTgvggGS-GggwCGCVATDAAETWLVAGwS 188
                 777776443333.1345789**********99865 PP

  == domain 5  score: -2.8 bits;  conditional E-value: 1.6
                 EEETTSSEEE CS
        WD40  17 afspdgawla 26 
                 +f p +++++
  KOO21018.1 216 CFEPGSDFHL 225
                 5777777754 PP

>> Nup160  Nucleoporin Nup120/160
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   7.5e-06     0.068     228     255 ..     129     158 ..     114     182 .. 0.87

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 7.5e-06
                 ...TTTEEEEEETT-EEEEEETTTTEEEEE CS
      Nup160 228 i..gqtylfalsrdgkLrvWnlltgkclat 255
                 +  ++++l+++s dg+  vW+l+t++c+at
  KOO21018.1 129 VdaASAHLYSASGDGNAYVWDLATQSCVAT 158
                 234899**********************99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (297 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       304  (0.0169558); expected 358.6 (0.02)
Passed bias filter:                      215  (0.0119917); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.40u 0.22s 00:00:00.62 Elapsed: 00:00:00.36
# Mc/sec: 2467.81
//
Query:       KOO21019.1  [L=278]
Description: 1 family protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.1e-36  126.0   0.1    2.4e-36  125.8   0.1    1.0  1  DegT_DnrJ_EryC1  DegT/DnrJ/EryC1/StrS aminotransferase family
  ------ inclusion threshold ------
      0.041   14.0   0.1       0.08   13.1   0.1    1.4  1  BRCC36_C         BRCC36 C-terminal helical domain


Domain annotation for each model (and alignments):
>> DegT_DnrJ_EryC1  DegT/DnrJ/EryC1/StrS aminotransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  125.8   0.1   2.7e-40   2.4e-36     102     358 ..       2     265 ..       1     268 [. 0.82

  Alignments for each domain:
  == domain 1  score: 125.8 bits;  conditional E-value: 2.7e-40
                      GGCGGG--TTEEEEEEB-GGGB---HHHHHHHHHHCT-EEEEE-TT-TT-EETTEECCCSSSEEEEE-BTTSSS-SSS-EEEEESTHHHHHHHH CS
  DegT_DnrJ_EryC1 102 aaieaaitertkaIlpVhlyGqvadmdalkaiaakhglkvieDaAhAlGatykgkkvGalgdaavfSFyptKnlttGeGGavvtndeelaekar 195
                      +++e++i++  k +l+ h+ G+va+m+++ aiaakhg+ vieD+AhAlG +y+g ++G  + +a+fS +++K +  GeGG ++t+d+e+a ka 
       KOO21019.1   2 DDLERKIEPDIKFVLLTHMRGKVANMQRVYAIAAKHGITVIEDCAHALGVQYDGVQLGRSSRVACFSTQQAKAINSGEGGFLMTDDDEIAAKAM 95 
                      5789**************************************************************************************9987 PP

                      HHHBTTCECCTCSSCECCS..............S---B-B-BHHHHHHHHHHHCTHHHHHHHHHHHHHHHHHHHHTCCCCEESCGGTTSSSEEE CS
  DegT_DnrJ_EryC1 196 vlrnhGlkrkaekryvgev..............elGynyrlteiqAAiglaqLerldelvarRreiaelykeeLaelegtaelttpketkkhaw 275
                      +    G+ ++   +    v               + y++r++++ A + + q++ l+  ++  ++ +e++ ++La +e    ++ + + +  + 
       KOO21019.1  96 C--YAGCYEDLVAQH---VnapptaifdavkkeIPNYSLRMSDLTACCIRPQIDTLEARIEMYNRRYEMICKQLAHCEHLHIPAIDARVR-PVS 183
                      3..344443111222...12234444555555449*******************************************987777777776.455 PP

                      SCEEEEEHCCHHHCHHHHHHHHHHCCEE-B-SGSCHGGGSCCHHHHHHCCCHC-HHHHHHHHHEEEEEGGTTGSHHHHHHHHH CS
  DegT_DnrJ_EryC1 276 hlyavlveeeaevkrdelvealkeegigtrvhypnplhrqpvyaerkeeasgdlpnaerlaervlsLplypelteedvdrVve 358
                        + + ++  +  ++ +++ + k++g+ + ++ + + +  ++ + +++  ++ ++++e++ + ++   l  ++++ed++++ +
       KOO21019.1 184 DSLQINLRGMSGEQVHAFLGHTKRRGMPVGLFGS-ADNARNFHNWKYSPMATGVEQTEAMIKAAIDVRLPLSFADEDITQIGA 265
                      55555555555568999************99983.445444444455566778999*******99999999999999999876 PP

>> BRCC36_C  BRCC36 C-terminal helical domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.1     9e-06      0.08      41      76 ..     127     162 ..     125     166 .. 0.91

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 9e-06
    BRCC36_C  41 ytkslcalseviavPllqtLesrlkenknrlaaLeq 76 
                 y+  +++l+ ++  P + tLe+r++ +++r++ +++
  KOO21019.1 127 YSLRMSDLTACCIRPQIDTLEARIEMYNRRYEMICK 162
                 77889*************************998876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (278 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       395  (0.0220313); expected 358.6 (0.02)
Passed bias filter:                      354  (0.0197445); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.41u 0.22s 00:00:00.63 Elapsed: 00:00:00.36
# Mc/sec: 2316.08
//
Query:       KOO21020.1  [L=631]
Description: putative histone-lysine n-methyltransferase nsd2 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
     0.0038   17.4   1.6     0.0038   17.4   1.6    2.1  2  zf-HC5HC2H_2  PHD-zinc-finger like domain
     0.0086   15.9   8.1     0.0086   15.9   8.1    3.0  3  PHD           PHD-finger
  ------ inclusion threshold ------
      0.015   15.6   4.1      0.015   15.6   4.1    2.1  2  zf-HC5HC2H    PHD-like zinc-binding domain


Domain annotation for each model (and alignments):
>> zf-HC5HC2H_2  PHD-zinc-finger like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.4   1.6   6.3e-07    0.0038      51      90 ..     490     528 ..     472     548 .. 0.83
   2 ?   -4.0   2.9       2.8   1.7e+04      57      78 ..     579     602 ..     567     615 .. 0.64

  Alignments for each domain:
  == domain 1  score: 17.4 bits;  conditional E-value: 6.3e-07
  zf-HC5HC2H_2  51 kerlkekCllCkkrkGaciqCskkeCktafHvtCalaagl 90 
                   + + ++ Cl Ck+  G  + C ++ C++++H+ Ca  + +
    KOO21020.1 490 PGEEESFCLKCKD-GGDVLLCDYSGCTKSYHPACANLKTV 528
                   5556788****99.6********************98765 PP

  == domain 2  score: -4.0 bits;  conditional E-value: 2.8
  zf-HC5HC2H_2  57 kCllCkkr....kGaciqCskkeCkt 78 
                    C  C  +    +G+ i C +  C++
    KOO21020.1 579 YCERCLPKevtfAGVEIVCES--CQE 602
                   333343335556788888877..665 PP

>> PHD  PHD-finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.2      0.86   5.1e+03      17      22 ..     207     212 ..     205     214 .. 0.59
   2 !   15.9   8.1   1.4e-06    0.0086       4      49 ..     496     543 ..     495     546 .. 0.72
   3 ?    2.1   4.8      0.03   1.8e+02      13      51 ..     567     602 ..     560     603 .. 0.81

  Alignments for each domain:
  == domain 1  score: -2.5 bits;  conditional E-value: 0.86
                 EETTTS CS
         PHD  17 qCdgCk 22 
                  C++C+
  KOO21020.1 207 RCESCD 212
                 466665 PP

  == domain 2  score: 15.9 bits;  conditional E-value: 1.4e-06
                 TTTSTTSTTSCEEEET..TTSCEEETTTSSSTHSHHSHHSS.TBSSTTT CS
         PHD   4 vCkkksdeeeelvqCd..gCkrwfHqkClkppleseekpeg.ewlCekC 49 
                 +C k  ++++++++Cd  gC +++H++C +++  +e + e  +  C +C
  KOO21020.1 496 FCLK-CKDGGDVLLCDysGCTKSYHPACANLKTVPEGIWECpRHRCVQC 543
                 4555.555*******9778************966444433345555555 PP

  == domain 3  score: 2.1 bits;  conditional E-value: 0.03
                 SCEEEETTTSCEEETTTSSSTHSHHSHHSSTBSSTTTHT CS
         PHD  13 eelvqCdgCkrwfHqkClkppleseekpegewlCekCke 51 
                  +l  C +C +++   Cl  +++ + ++    +Ce+C+e
  KOO21020.1 567 CTLWACRTCPTTYCERCLPKEVTFAGVE---IVCESCQE 602
                 56678************99998866664...69999985 PP

>> zf-HC5HC2H  PHD-like zinc-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.6   4.1   2.5e-06     0.015      36      70 ..     494     527 ..     487     546 .. 0.85
   2 ?   -5.6   3.9         3   1.8e+04      54      59 ..     577     582 ..     565     604 .. 0.50

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 2.5e-06
  zf-HC5HC2H  36 klkCylCkkkvGaciqCskkkCkkafHvtCakeag 70 
                 +  C  Ck+  G ++ C+ + C+k++H+ Ca  + 
  KOO21020.1 494 ESFCLKCKDG-GDVLLCDYSGCTKSYHPACANLKT 527
                 667******9.********************8765 PP

  == domain 2  score: -5.6 bits;  conditional E-value: 3
  zf-HC5HC2H  54 kkkCkk 59 
                  + C++
  KOO21020.1 577 TTYCER 582
                 222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (631 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       660  (0.0368119); expected 358.6 (0.02)
Passed bias filter:                      347  (0.0193541); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.58u 0.25s 00:00:00.83 Elapsed: 00:00:00.42
# Mc/sec: 4483.04
//
Query:       KOO21021.1  [L=181]
Description: hypothetical protein Ctob_002062 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (181 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       327  (0.0182386); expected 358.6 (0.02)
Passed bias filter:                      266  (0.0148363); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.40u 0.24s 00:00:00.64 Elapsed: 00:00:00.41
# Mc/sec: 1334.17
//
Query:       KOO21022.1  [L=343]
Description: 60s ribosome subunit biogenesis protein nip7-like protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.5e-27   94.4   0.1    7.8e-27   93.7   0.1    1.3  1  UPF0113_N  UPF0113 Pre-PUA domain
    7.8e-23   80.5   0.0    1.2e-22   79.9   0.0    1.3  1  UPF0113    UPF0113 PUA domain


Domain annotation for each model (and alignments):
>> UPF0113_N  UPF0113 Pre-PUA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   93.7   0.1   8.7e-31   7.8e-27       9      82 .]     173     246 ..     172     246 .. 0.98

  Alignments for each domain:
  == domain 1  score: 93.7 bits;  conditional E-value: 8.7e-31
   UPF0113_N   9 rivfekLtkyigdnvkelldrkdgtycfrlkkkrVyyvseellklaetikpenlisaGtclGkftktkkFrlsi 82 
                 ++ fekL+kyig ++k l+dr+dg ycfrl+++rVyyvse llk a+ +++++l+ +G  +Gkftkt+kFrl++
  KOO21022.1 173 KTFFEKLAKYIGHGIKRLIDRPDGRYCFRLHNNRVYYVSEALLKHASALPRDKLHQIGCTFGKFTKTGKFRLHV 246
                 689*********************************************************************96 PP

>> UPF0113  UPF0113 PUA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   79.9   0.0   1.4e-26   1.2e-22       1      76 []     259     338 ..     259     338 .. 0.98

  Alignments for each domain:
  == domain 1  score: 79.9 bits;  conditional E-value: 1.4e-26
     UPF0113   1 kvvvkekaeklFLYGrdvlkesilkitesvkenqvvvVlnengeplGiGkirkdt...k.aspgkivvknlaDiGeYlRr 76 
                 kv++k++ae++FLYG++vlk ++ +ite++++ q+v+Vln+ + plG+G ++k+t   + + p++iv+ ++aD+GeYlR+
  KOO21022.1 259 KVWLKPSAEQSFLYGNHVLKAGLGRITEDTPQYQGVIVLNMADVPLGFGTAAKSTaevRkLVPQGIVAFHQADVGEYLRD 338
                 89********************************************************77*******************5 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (343 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       269  (0.0150036); expected 358.6 (0.02)
Passed bias filter:                      252  (0.0140554); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.42u 0.24s 00:00:00.65 Elapsed: 00:00:00.38
# Mc/sec: 2671.96
//
Query:       KOO21023.1  [L=97]
Description: hypothetical protein Ctob_007901 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (97 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       820  (0.045736); expected 358.6 (0.02)
Passed bias filter:                      515  (0.0287244); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.22s 00:00:00.59 Elapsed: 00:00:00.37
# Mc/sec: 784.44
//
Query:       KOO21024.1  [L=221]
Description: hypothetical protein Ctob_001669 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (221 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       436  (0.0243181); expected 358.6 (0.02)
Passed bias filter:                      337  (0.0187964); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.24s 00:00:00.61 Elapsed: 00:00:00.37
# Mc/sec: 1779.89
//
Query:       KOO21025.1  [L=551]
Description: membrane protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    6.7e-25   88.1   1.4    1.2e-24   87.2   1.4    1.3  1  Bestrophin  Bestrophin, RFP-TM, chloride channel
    3.6e-12   44.9   1.8    1.2e-06   27.7   0.1    2.6  2  EF-hand_1   EF hand
    5.8e-12   44.5   0.4    2.8e-06   26.8   0.0    2.7  2  EF-hand_6   EF-hand domain
    4.9e-11   42.9   0.1    9.3e-11   42.0   0.1    1.4  1  EF-hand_7   EF-hand domain pair
      9e-10   38.3   0.1    2.3e-09   37.0   0.1    1.7  1  EF-hand_8   EF-hand domain pair
      3e-08   32.8   0.7     0.0049   16.3   0.0    2.5  2  EF-hand_5   EF hand
    0.00099   18.9   1.4     0.0033   17.2   0.2    2.2  2  EF-hand_10  EF hand


Domain annotation for each model (and alignments):
>> Bestrophin  Bestrophin, RFP-TM, chloride channel
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   87.2   1.4   4.7e-28   1.2e-24      53     291 ..     234     451 ..     185     455 .. 0.77

  Alignments for each domain:
  == domain 1  score: 87.2 bits;  conditional E-value: 4.7e-28
  Bestrophin  53 lsicelipLsfvLgFrvnavydRWweqrkllgwldkaarslarqvrglsdeegrlarrtilrylvlllvlffralssrvrkrfptlehlleagllteee 151
                 l      +L+f+ + r+ a+++ Wwe+r ++ ++ + ++s+  q+        + + ++ +   ++ l++f+ + ++ +r +  ++e++   g +  e 
  KOO21025.1 234 L----GGALAFLVVMRTDASMSHWWEARCSWQQIMNSCVSIGCQTAPA---LPTVQATEQM---LMELMAFCVCFKAFLRDTTVQPEECG--GRMDWEY 320
                 3....448************************************9994...3466666667...89*********************976..5567777 PP

  Bestrophin 152 akilenkywvplqWavsllrrlaerlkelakegrikddqalkeleeelnelraklgsleridwtpiPlvYtqvvtravylyfllallgrqfldseidly 250
                  ++l++++++p++    +l++l++  ++ + ++++ +   ++e  e++ e+ +++g++++i+ t++ ++Y  ++  +++l++ +             + 
  KOO21025.1 321 IRALNAAHNPPIT----ALQHLTKT-ARENLSKQLGAA-IYDETSESIREINDAVGACMKIKRTSMVFSYVATLRSFLILWLST-------------MS 400
                 78888********....77776633.334444444443.5579*****************************************.............66 PP

  Bestrophin 251 lPvftllq.........faffffGllkvaeqlenPFGedddDlelnal.id 291
                 +P+++ +          +af+f+ +++ a ++e+PFG+d +Dl+++a+ id
  KOO21025.1 401 IPLIGEFGwlavpasslIAFLFLNIEQMAVEIEQPFGNDANDLPIEAFlID 451
                 66544333555777777889*************************998655 PP

>> EF-hand_1  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.7   0.1   4.5e-10   1.2e-06       1      28 [.      53      80 ..      53      81 .. 0.94
   2 !   16.2   0.2   2.1e-06    0.0054       1      26 [.      89     114 ..      89     117 .. 0.91

  Alignments for each domain:
  == domain 1  score: 27.7 bits;  conditional E-value: 4.5e-10
                HHHHHHHHHTTTSSSEEEHHHHHHHHHH CS
   EF-hand_1  1 elkeiFrefDkDgdGkIdfeEfkellkk 28
                e++++F+ +DkDg+Gk++ eE+k++l+ 
  KOO21025.1 53 EVRKAFESYDKDGSGKLEEEEMKAALRL 80
                799**********************986 PP

  == domain 2  score: 16.2 bits;  conditional E-value: 2.1e-06
                 HHHHHHHHHTTTSSSEEEHHHHHHHH CS
   EF-hand_1   1 elkeiFrefDkDgdGkIdfeEfkell 26 
                 e +++F+ +D D++G+I ++Ef+e++
  KOO21025.1  89 EANDLFKQMDADNSGFIVLNEFVEVW 114
                 56899******************998 PP

>> EF-hand_6  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.8   0.0   1.1e-09   2.8e-06       1      31 []      53      82 ..      53      82 .. 0.93
   2 !   15.2   0.1   5.6e-06     0.014       2      24 ..      90     112 ..      89     118 .. 0.90

  Alignments for each domain:
  == domain 1  score: 26.8 bits;  conditional E-value: 1.1e-09
   EF-hand_6  1 elreaFklfDkdgdGkidaeElrkalrkalg 31
                e+r+aF+ +Dkdg+Gk+  eE+++alr ++g
  KOO21025.1 53 EVRKAFESYDKDGSGKLEEEEMKAALR-LMG 82
                679************************.665 PP

  == domain 2  score: 15.2 bits;  conditional E-value: 5.6e-06
   EF-hand_6   2 lreaFklfDkdgdGkidaeElrk 24 
                  +++Fk++D d++G+i  +E++ 
  KOO21025.1  90 ANDLFKQMDADNSGFIVLNEFVE 112
                 689*****************986 PP

>> EF-hand_7  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.0   0.1   3.6e-14   9.3e-11       4      69 ..      54     113 ..      52     115 .. 0.94

  Alignments for each domain:
  == domain 1  score: 42.0 bits;  conditional E-value: 3.6e-14
   EF-hand_7   4 lkeaFkelDtdgdgyldkeellrllrkifqgagegsklsdeelellfkefDtdkdGvisfdEFlkl 69 
                 ++ aF+++D+dg+g+l++ee++ +lr        g+ + ++e  +lfk +D d++G i ++EF++ 
  KOO21025.1  54 VRKAFESYDKDGSGKLEEEEMKAALR------LMGVATNEKEANDLFKQMDADNSGFIVLNEFVEV 113
                 6789**********************......9999999************************985 PP

>> EF-hand_8  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.0   0.1   8.9e-13   2.3e-09       2      52 ..      66     114 ..      65     115 .. 0.96

  Alignments for each domain:
  == domain 1  score: 37.0 bits;  conditional E-value: 8.9e-13
   EF-hand_8   2 kgkItreelrrilrilglkkglseeevdilfrefDtdgdGkisfeEFcvll 52 
                 +gk+  ee++ +lr++g +  ++e+e+ +lf+ +D d++G i ++EF++++
  KOO21025.1  66 SGKLEEEEMKAALRLMGVA--TNEKEANDLFKQMDADNSGFIVLNEFVEVW 114
                 799****************..***************************998 PP

>> EF-hand_5  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.0   1.9e-06    0.0049       2      23 ..      55      76 ..      54      78 .. 0.89
   2 !   14.5   0.1     7e-06     0.018       2      21 ..      91     110 ..      90     114 .. 0.84

  Alignments for each domain:
  == domain 1  score: 16.3 bits;  conditional E-value: 1.9e-06
                HHHHHHH-SS-SSCE-HHHHHH CS
   EF-hand_5  2 kdtFqaiDlNgDGkIskeELkt 23
                +++F+  D++g+Gk+  eE k+
  KOO21025.1 55 RKAFESYDKDGSGKLEEEEMKA 76
                678****************986 PP

  == domain 2  score: 14.5 bits;  conditional E-value: 7e-06
                 HHHHHHH-SS-SSCE-HHHH CS
   EF-hand_5   2 kdtFqaiDlNgDGkIskeEL 21 
                 +d+F+++D++++G+I   E+
  KOO21025.1  91 NDLFKQMDADNSGFIVLNEF 110
                 79************966666 PP

>> EF-hand_10  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.0   0.2    0.0041        11      20      44 ..      49      75 ..      47      76 .. 0.85
   2 !   17.2   0.2   1.3e-06    0.0033       1      45 [.      68     112 ..      68     118 .. 0.90

  Alignments for each domain:
  == domain 1  score: 6.0 bits;  conditional E-value: 0.0041
  EF-hand_10 20 deYAe..kLFkkcDkSksgrLegeEie 44
                ++YAe  k F   Dk  sg+Le+eE++
  KOO21025.1 49 QQYAEvrKAFESYDKDGSGKLEEEEMK 75
                688853389****************86 PP

  == domain 2  score: 17.2 bits;  conditional E-value: 1.3e-06
  EF-hand_10   1 kmsfkEvkrlLreiNievddeYAekLFkkcDkSksgrLegeEiee 45 
                 k+  +E+k  Lr++ +  +++ A+ LFk+ D  +sg++  +E++e
  KOO21025.1  68 KLEEEEMKAALRLMGVATNEKEANDLFKQMDADNSGFIVLNEFVE 112
                 67779*******************************998888876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (551 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       626  (0.0349155); expected 358.6 (0.02)
Passed bias filter:                      489  (0.0272742); expected 358.6 (0.02)
Passed Vit filter:                        48  (0.00267723); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.58u 0.28s 00:00:00.86 Elapsed: 00:00:00.45
# Mc/sec: 3663.97
//
Query:       KOO21026.1  [L=379]
Description: scp-like extracellular [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    4.8e-12   45.9   8.7    2.6e-08   33.9   3.7    2.4  2  LIM           LIM domain
      0.009   15.9   5.2       0.11   12.4   0.2    2.9  2  Prok-RING_1   Prokaryotic RING finger family 1
  ------ inclusion threshold ------
        1.5    8.8  10.8       0.42   10.6   0.3    3.5  3  zf-dskA_traR  Prokaryotic dksA/traR C4-type zinc finger
          2    8.3   7.1         47    3.9   0.0    3.4  3  VATC          Vms1-associating treble clef domain


Domain annotation for each model (and alignments):
>> LIM  LIM domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.9   3.7   5.9e-12   2.6e-08       1      58 []     247     304 ..     247     304 .. 0.86
   2 !   14.5   0.2     7e-06     0.031       1      26 [.     308     331 ..     308     332 .. 0.98

  Alignments for each domain:
  == domain 1  score: 33.9 bits;  conditional E-value: 5.9e-12
                 -TTT--BE-TTTEEEEETTEEEETTTSB-TTT-SB-CTT.CEEETTEEEEHHHHHHHC CS
         LIM   1 CagCnkkiadrelvlkaldkvwHeeCFtCsdCqkeLkegsfyekdgklyCkkdylkkf 58 
                 CagC+++i+   ++   +  ++H+eCF+C +C k+L        +++ +C ++++++f
  KOO21026.1 247 CAGCGEPIQGGAVMETDKLGKFHKECFKCITCTKSLVGVPWKAEKADAFCAECHVQAF 304
                 *********999887666679****************9965555559*******9875 PP

  == domain 2  score: 14.5 bits;  conditional E-value: 7e-06
                 -TTT--BE-TTTEEEEETTEEEETTT CS
         LIM   1 CagCnkkiadrelvlkaldkvwHeeC 26 
                 CagC+kkia + ++  +++  +H+eC
  KOO21026.1 308 CAGCGKKIAGAGVT--VSGTPYHKEC 331
                 ************99..9********* PP

>> Prok-RING_1  Prokaryotic RING finger family 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.2   1.2    0.0095        42       6      36 ..     246     274 ..     243     288 .. 0.84
   2 !   12.4   0.2   2.5e-05      0.11       6      34 ..     307     331 ..     302     339 .. 0.82

  Alignments for each domain:
  == domain 1  score: 4.2 bits;  conditional E-value: 0.0095
  Prok-RING_1   6 kCpvCgkelkeedDiVvCpeCgtpyHraCye 36 
                  +C  Cg++++ +  +V+ ++    +H++C++
   KOO21026.1 246 RCAGCGEPIQGG--AVMETDKLGKFHKECFK 274
                  6999*****999..89988888999****97 PP

  == domain 2  score: 12.4 bits;  conditional E-value: 2.5e-05
  Prok-RING_1   6 kCpvCgkelkeedDiVvCpeCgtpyHraC 34 
                  +C  Cgk+++ +      ++ gtpyH++C
   KOO21026.1 307 ECAGCGKKIAGAGV----TVSGTPYHKEC 331
                  7********99943....457******** PP

>> zf-dskA_traR  Prokaryotic dksA/traR C4-type zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.3   9.3e-05      0.42       2      13 ..     243     254 ..     242     255 .. 0.89
   2 ?   -2.3   0.4      0.98   4.4e+03      26      30 ..     295     299 ..     294     300 .. 0.53
   3 ?    3.8   0.5     0.012        55       5      14 ..     307     316 ..     305     318 .. 0.86

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 9.3e-05
  zf-dskA_traR   2 iygsCeeCGEpI 13 
                    +g+C++CGEpI
    KOO21026.1 243 NLGRCAGCGEPI 254
                   5799*******9 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 0.98
  zf-dskA_traR  26 lCveC 30 
                   +C eC
    KOO21026.1 295 FCAEC 299
                   45555 PP

  == domain 3  score: 3.8 bits;  conditional E-value: 0.012
  zf-dskA_traR   5 sCeeCGEpIp 14 
                    C++CG++I+
    KOO21026.1 307 ECAGCGKKIA 316
                   5*******96 PP

>> VATC  Vms1-associating treble clef domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.6   0.2     0.014        61       2      15 ..     243     256 ..     242     271 .. 0.83
   2 ?    2.6   1.1     0.027   1.2e+02       2      19 ..     271     287 ..     270     302 .. 0.83
   3 ?    3.9   0.0      0.01        47       5      21 ..     307     329 ..     305     330 .. 0.85

  Alignments for each domain:
  == domain 1  score: 3.6 bits;  conditional E-value: 0.014
        VATC   2 nvlrCsiCgesleg 15 
                 n+ rC +Cge ++g
  KOO21026.1 243 NLGRCAGCGEPIQG 256
                 778*******9987 PP

  == domain 2  score: 2.6 bits;  conditional E-value: 0.027
        VATC   2 nvlrCsiCgeslegkvyF 19 
                 ++ +C  C +sl+g v++
  KOO21026.1 271 ECFKCITCTKSLVG-VPW 287
                 5679*********9.886 PP

  == domain 3  score: 3.9 bits;  conditional E-value: 0.01
        VATC   5 rCsiCgesleg......kvyFek 21 
                 +C +Cg+++ g       ++++k
  KOO21026.1 307 ECAGCGKKIAGagvtvsGTPYHK 329
                 7*********9888777779998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (379 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       580  (0.0323498); expected 358.6 (0.02)
Passed bias filter:                      374  (0.0208601); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.48u 0.23s 00:00:00.71 Elapsed: 00:00:00.40
# Mc/sec: 2857.08
//
Query:       KOO21027.1  [L=315]
Description: mta sah nucleosidase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.2e-21   76.2   3.1    3.3e-21   75.6   3.1    1.2  1  PNP_UDP_1  Phosphorylase superfamily


Domain annotation for each model (and alignments):
>> PNP_UDP_1  Phosphorylase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   75.6   3.1   1.8e-25   3.3e-21       1     199 [.       3     218 ..       3     232 .. 0.86

  Alignments for each domain:
  == domain 1  score: 75.6 bits;  conditional E-value: 1.8e-25
                 CEEEEESSHHHHHHHHHH.EEEEEEEEEE..TTEEEEEEEETTEEEEEEE--SSHHHHHHHHHHHHHHHC--SEEEEEEEEEESSTTT-TT-EEEEEE. CS
   PNP_UDP_1   1 kiaiivgspgevellaes.pleetpfgre.grgfkfvtGtlkgkpvvivstGiGkpnaavvaeirllkefgvkaiiriGtaGglnpdlkvGDvvipdd. 96 
                 +++++v++++e++ l    +   + ++++     k ++G++ g +v +v +GiG++ aa  a++++l +  + a+i++G++G+  p+ + GD+vi +  
  KOO21027.1   3 RVIVMVAMEEEAQFLYPLiE-NGLVEQPPiRGIVKSFRGEVDGLTVDVVVSGIGAVFAA-SAMTAALSASPAMAVISCGCSGAHIPEQRMGDIVIGSTv 99 
                 589***************43.33333333366899************************.**************************************4 PP

                 ......EEESSSCCGCCTHHCCTCCCCTTSSEE--HHHHHHHHHCHHTTT...........TTEEEEEEEEESESS-CHHHHHHHHHHTC-CEEESSHH CS
   PNP_UDP_1  97 ......ainfdgrsplygpkeegqyfpdsydapadpelrallkeaaealg...........ikvhrGvvatadgfyaeteaelrllrrlgadaveMEta 178
                       +i+  g s+l g++   +   +  ++ a+p l++l+ eaa+a             ++v  G+v+++d ++ +    ++ ++     + eME++
  KOO21027.1 100 vplqaeVIDRHGKSRLAGVRCL-MTEEHTKEFVAHPVLLRLATEAAHAVSaeiggegaapaPRVDIGAVGSSDLWRQSPSLIAETHAAHKTLCEEMEAH 197
                 4433333668888888888887.*********************55555566778999999******************66666777777889****** PP

                 HHHHHHHHTT--EEEEEEEEE CS
   PNP_UDP_1 179 avaqlArelgipfaairvvsd 199
                 a+aq++r +++pf++i+ v++
  KOO21027.1 198 ALAQVCRVFEVPFVSIKDVAN 218
                 ****************99888 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (315 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       464  (0.0258799); expected 358.6 (0.02)
Passed bias filter:                      322  (0.0179597); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.25s 00:00:00.68 Elapsed: 00:00:00.40
# Mc/sec: 2341.55
//
Query:       KOO21028.1  [L=491]
Description: acyl-CoA-binding protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    6.3e-17   61.6   0.1    1.2e-16   60.7   0.1    1.4  1  ACBP            Acyl CoA binding protein
  ------ inclusion threshold ------
       0.17   11.4   0.0       0.27   10.8   0.0    1.2  1  Choline_kinase  Choline/ethanolamine kinase


Domain annotation for each model (and alignments):
>> ACBP  Acyl CoA binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.7   0.1   1.3e-20   1.2e-16       3      83 ..     119     195 ..     118     197 .. 0.90

  Alignments for each domain:
  == domain 1  score: 60.7 bits;  conditional E-value: 1.3e-20
                 HHHHHHHHH.H...HSTS---HHHHHHHHHHHHHHHTSS--S---.-TTSHHHHHHHHHHHHTTT--HHHHHHHHHHHHHHH CS
        ACBP   3 eFekavaavkklekklkkkpsneeklelYglyKqateGdvntsrP.saldfkgkaKwdaWkalkglskeeAkkkYiellkel 83 
                 +Fe+a++ +++        +s++++l+l+glyKqat+Gd + + P s ld+k+++Kw aW a++g+s   A++ Y el   l
  KOO21028.1 119 SFEAAAERMRN-----VRGLSTDTQLQLFGLYKQATSGDAPLTSPaSRLDVKEQKKWVAWAAMRGQSASTAQACYLELTHTL 195
                 69*******66.....2347********************87888899****************************998776 PP

>> Choline_kinase  Choline/ethanolamine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0     3e-05      0.27     149     175 ..      22      48 ..      11      72 .. 0.87

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 3e-05
                     -S--SGGGEEE.-CTTEEEE--GTT-E CS
  Choline_kinase 149 HnDlqegNillnkeekklvlIDFEYag 175
                     H Dl  gN+l+   ++++ ++DF  +g
      KOO21028.1  22 HADLHMGNMLYCAATDSVAFVDFGVCG 48 
                     ***********************8776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (491 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       726  (0.0404931); expected 358.6 (0.02)
Passed bias filter:                      399  (0.0222544); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.58u 0.25s 00:00:00.83 Elapsed: 00:00:00.44
# Mc/sec: 3328.11
//
Query:       KOO21029.1  [L=560]
Description: f-box only protein 18 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.5e-09   36.6   0.0    5.2e-09   36.1   0.0    1.2  1  UvrD-helicase    UvrD/REP helicase N-terminal domain
    6.1e-06   26.0   0.0      0.034   14.0   0.0    2.9  2  UvrD_C_2         UvrD-like helicase C-terminal domain
     0.0001   21.9   0.0    0.00016   21.2   0.0    1.3  1  UvrD_C           UvrD-like helicase C-terminal domain
     0.0085   15.9   0.0       0.59    9.8   0.0    2.9  3  Viral_helicase1  Viral (Superfamily 1) RNA helicase
  ------ inclusion threshold ------
      0.015   15.6   0.0      0.029   14.7   0.0    1.5  1  AAA_19           AAA domain
      0.058   12.8   0.0      0.099   12.1   0.0    1.2  1  PhoH             PhoH-like protein
       0.15   11.0   0.0       0.24   10.3   0.0    1.2  1  IFT57            Intra-flagellar transport protein 57


Domain annotation for each model (and alignments):
>> UvrD-helicase  UvrD/REP helicase N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.1   0.0     2e-12   5.2e-09     247     307 ..     140     199 ..      32     204 .. 0.76

  Alignments for each domain:
  == domain 1  score: 36.1 bits;  conditional E-value: 2e-12
                    HHHHHHHHHHSSEEEESSGGG-BHHHHHHHHHHHTTTTTEEEEE-GGG--GGGGTB-THHH CS
  UvrD-helicase 247 eelaealrerykeiliDEyQDTnkiQyrilkllasgheelfmvGDpkQsIYgFRgAdielf 307
                     +l+ +  +++  il DE+QD   +Q + + l   +h  +f+vGD  Q+ Y++R A++  +
     KOO21029.1 140 AQLRGMELSEFSAILLDEAQDCTDCQLDAFVL-QPSHADIFVVGDMAQALYSWRHAKPAQL 199
                    5677777889******************9965.555568*****************99765 PP

>> UvrD_C_2  UvrD-like helicase C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.0   0.0   1.3e-05     0.034       3      23 ..     424     444 ..     422     447 .. 0.87
   2 !    8.9   0.0    0.0005       1.3      34      49 ..     492     507 ..     469     509 .. 0.73

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 1.3e-05
    UvrD_C_2   3 yaltihkaQGsefpaVivfdp 23 
                   +t+ +a+G+e+p V+v d+
  KOO21029.1 424 LLSTVCQAKGLEWPRVQVLDD 444
                 678***************875 PP

  == domain 2  score: 8.9 bits;  conditional E-value: 0.0005
    UvrD_C_2  34 rrrlLYtavTRArekl 49 
                   +  ++avTRA+e+l
  KOO21029.1 492 ELNSWFVAVTRAQEEL 507
                 67788*********98 PP

>> UvrD_C  UvrD-like helicase C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.2   0.0   6.1e-08   0.00016     264     343 ..     404     508 ..     328     510 .. 0.73

  Alignments for each domain:
  == domain 1  score: 21.2 bits;  conditional E-value: 6.1e-08
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx................................xxxxxxxxxxxxxxxx RF
      UvrD_C 264 lneileiatLseseleeskkkekipiiTiHqAKGlEFdvVflagleegtfP................................syrskkekrleEEkRl 330
                 ++++ e   L+++   +s     + ++T+ qAKGlE++ V +++   + +P                                 + + +++    E + 
  KOO21029.1 404 IRKFDECV-LRAGHTASS---ADVLLSTVCQAKGLEWPRVQVLD---DCIPidvlhvigdadlgdgkgpcarvlfqpdyecgdPSKKARLDWKGDELNS 495
                 44444444.566555444...78*****************9999...9***********************9999998888763333446777899*** PP

                 xxxxxxxxxxxxx RF
      UvrD_C 331 fYVaiTRAkkrLf 343
                  +Va+TRA+++L 
  KOO21029.1 496 WFVAVTRAQEELQ 508
                 **********995 PP

>> Viral_helicase1  Viral (Superfamily 1) RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.8   0.0   0.00023      0.59      55     114 ..     145     199 ..     114     220 .. 0.73
   2 ?    2.2   0.0     0.051   1.3e+02     178     202 ..     419     442 ..     355     451 .. 0.80
   3 ?   -1.3   0.0      0.56   1.4e+03     217     231 ..     494     508 ..     483     509 .. 0.81

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.00023
  Viral_helicase1  55 malvkstkgkililDEylllhaGyill.laalskaklvilfGDplQipfhsrnasfllahl 114
                      m l    ++  ++lDE++ ++ +++++ +++ s+a  ++++GD +Q  ++ r+a  + a+l
       KOO21029.1 145 MEL---SEFSAILLDEAQDCTDCQLDAfVLQPSHA-DIFVVGDMAQALYSWRHA--KPAQL 199
                      333...358899***************88888888.5999******99997766..55554 PP

  == domain 2  score: 2.2 bits;  conditional E-value: 0.051
  Viral_helicase1 178 ealgvrevttvhevqGltfdkVtlv 202
                      ++  v   +tv+++ Gl++++V+++
       KOO21029.1 419 SSADVL-LSTVCQAKGLEWPRVQVL 442
                      334444.79*************986 PP

  == domain 3  score: -1.3 bits;  conditional E-value: 0.56
  Viral_helicase1 217 enllvAlTRhrkslv 231
                      +  +vA TR+ ++l 
       KOO21029.1 494 NSWFVAVTRAQEELQ 508
                      6779******99985 PP

>> AAA_19  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.7   0.0   1.2e-05     0.029      99     144 ..     146     190 ..     114     192 .. 0.80

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 1.2e-05
      AAA_19  99 klqeee.llivDEfqdvdelqyrLlkallgekkklllvGDpdQliyv 144
                 +l +e+ +++ DE+qd ++ q   +   + +++++++vGD  Q+ y+
  KOO21029.1 146 EL-SEFsAILLDEAQDCTDCQLDAFVLQP-SHADIFVVGDMAQALYS 190
                 56.55559**********88888776666.5556**********997 PP

>> PhoH  PhoH-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   3.8e-05     0.099     110     158 ..     139     187 ..     133     202 .. 0.84

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 3.8e-05
                 GGGGTT--B-S.EEEEE-SGGG--HHHHHHHHTTB-TT-EEEEEE----- CS
        PhoH 110 laymRGrTlnd.afvilDEAQnttkeqmkmfltRlGenskvvvtGdvtqi 158
                  a +RG  l++ + ++lDEAQ++t  q+  f+    +++ + v+Gd++q 
  KOO21029.1 139 WAQLRGMELSEfSAILLDEAQDCTDCQLDAFVLQ-PSHADIFVVGDMAQA 187
                 6889****99868999**************9986.467788888999885 PP

>> IFT57  Intra-flagellar transport protein 57
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.0   9.3e-05      0.24      43      76 ..      59      94 ..      49     103 .. 0.82

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 9.3e-05
       IFT57 43 FylFtslaaWLlkkag.kkfea.pqeyDdpnatisn 76
                Fy F +l++WL +k     +++ p ++Dd+    ++
  KOO21029.1 59 FYIFKTLVSWLASKHDeARLQQpPAQFDDITYYPAK 94
                ****************655555499****9766555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (560 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       343  (0.019131); expected 358.6 (0.02)
Passed bias filter:                      313  (0.0174578); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.52u 0.26s 00:00:00.78 Elapsed: 00:00:00.43
# Mc/sec: 3945.75
//
Query:       KOO21030.1  [L=473]
Description: violaxanthin de-epoxidase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.2e-75  254.2   0.3    1.5e-75  253.8   0.3    1.1  1  VDE       VDE lipocalin domain


Domain annotation for each model (and alignments):
>> VDE  VDE lipocalin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  253.8   0.3   8.4e-80   1.5e-75       3     238 .]     115     373 ..     113     373 .. 0.91

  Alignments for each domain:
  == domain 1  score: 253.8 bits;  conditional E-value: 8.4e-80
         VDE   3 kcllkkckvelkrcladkdClkglvclakCkkdeqaCqikCgdlyenevldefleCaiedkkcvk.....qksdegeaevkapsalvkafdlkslegkW 96 
                  c++++ck+e+++c ad+dC+kgl+c akC+ ++++C+++C+++y+n++ld++l+C+ied  c++         ++ ++++++ +++ + ++++++gkW
  KOO21030.1 115 GCFATSCKAETEACGADRDCVKGLACSAKCM-GDAQCTMGCFARYGNPTLDRVLQCTIEDAGCIQiatqaP-GADSPYDAPKAPKALVKATPAMMSGKW 211
                 7******************************.*********************************887532.334677777888889999********* PP

         VDE  97 yivaGlnpafDvFdCQkhtfs.............ksekkklegdlefrvkrpdgg....fferslveklvqd........tksegklfnhdneyLhyee 170
                 y+v G+np++D+F+CQk++fs             +  +++ ++d+e+ ++r+++g    +f+ +lve+lv+d         ++eg++f+     L+++e
  KOO21030.1 212 YKVLGFNPNYDCFECQKNSFSagavantasvsamTVGPQSAVVDVEYTMPRERVGapttTFQAHLVESLVFDsapgavrtAHTEGHMFG-----LTFWE 305
                 *********************8888887777764446777999********854444449******************955********.....***** PP

         VDE 171 dwyilg.kekdeeeyklvyYrGktdaqkgYeGavvysrsaelpeeaipeveeaakkagldlskfikidN 238
                 +wy++g ++++e+e+++vyY+Gkt +q++YeGa+vy+r++elp++++p+++++a++ag+d+++ + idN
  KOO21030.1 306 NWYLIGtNQPKEPEFRFVYYTGKT-LQNRYEGAFVYARKPELPTASMPSIYKLAREAGMDPTRACCIDN 373
                 ******9999**************.*******************************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (473 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       548  (0.030565); expected 358.6 (0.02)
Passed bias filter:                      314  (0.0175135); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.24s 00:00:00.73 Elapsed: 00:00:00.40
# Mc/sec: 3552.72
//
Query:       KOO21031.1  [L=527]
Description: serine carboxypeptidase-like 20-like protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.9e-85  286.8   0.0    4.8e-85  286.5   0.0    1.1  1  Peptidase_S10  Serine carboxypeptidase


Domain annotation for each model (and alignments):
>> Peptidase_S10  Serine carboxypeptidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  286.5   0.0   2.7e-89   4.8e-85       1     418 [.      32     523 ..      32     524 .. 0.91

  Alignments for each domain:
  == domain 1  score: 286.5 bits;  conditional E-value: 2.7e-89
                    TTCSST-SSEEEEEEEECS.TTTTEEEEEEEEE-SSGTTTS-EEEEE--TTTB-THH.HHHHTTSSEEEE.....TTTTSEEEE-TT-GGGCSEEE CS
  Peptidase_S10   1 PgleetvnfkqysGYldve.eeedkslFYwfveseknpeedplvlWLnGGPGCsSld.GlleElGPfrvn.....kdstkkleenpysWnkvanvl 89 
                    Pg  + +++k  sGYl+++ e ++ + +Y+++es++np+ dplvlW +GGPG+s+++ G l ElGP+++n     + + +++++n  sW+ ++n+l
     KOO21031.1  32 PGYPGVMPSKVFSGYLKAHaEGQTFYSHYVLTESQRNPSADPLVLWQQGGPGSSGFGyGYLAELGPYVLNadsldNATVPTPQRNFKSWDTISNLL 127
                    6666678999********9344555679******************************************88887677899*************** PP

                    EE--STTSTT-EETTSSG....S--SHHHHHHHHHHHHHHHHHHSTCGTTSEEEEEEETTHHHHHHHHHHHHHTHCCH--SSTSEEEEEEEESE-S CS
  Peptidase_S10  90 fldqPvGvGFSysntksd....vktddeevaedlyefLkkffekfpeyksrdfyitGESYaGhyvPalakeilkknkkekkkkinLkGlligNgli 181
                      + P G+GFSy  + ++     +++d++ a+++y+ L  f+e  p ++ +d+ i GESYaG  +P l+ ei  ++ +e ++  +L+G++igNg+ 
     KOO21031.1 128 LFEHPPGTGFSYCVDAAEkpiaCEWNDQTQAKAFYNTLLAFYEAWPTFAAHDLKIIGESYAGLLIPFLVYEIFTQHPDE-TPARQLSGIAIGNGCP 222
                    ************98888779999*****************************************************885.8*************** PP

                    BHHHHHCCHHH................HHHHTTSSHHHHHHHHHHHHEET.......HHHHHHHHHHHHHHHHHHHHHHHHHCHCEETTETTSEET CS
  Peptidase_S10 182 deaeqvnsyve................fayehgliseeeyeslkkacekk.......eeleqesekcanllekaskvavekenkglnvynileecc 254
                      a +++s                    ay+hg++    ++ l kac +        e++++ se+c++ll++as+     + +++n+yn+  +c 
     KOO21031.1 223 GTAGSTPSKRGscngpfgsydtqhimeLAYGHGALPRALWNALAKACGFPcaaplwtEDCASFSEECSALLNNASA-----AIGDFNIYNFVDNCG 313
                    ***99999888899**********************************99999***999***************98.....4579**********8 PP

                    TSSEE...............................HHHCTTCCCCTTTTTCHHHHHHHHTSHHHHHHTT--...TTSSS--SB-HHHHHHCTCCC CS
  Peptidase_S10 255 klkae...............................lkksstdaqggedpydesyvekylnkkeVrkalhvn...asvkkweecndsvfeqleddi 316
                    + ++e                                + + ++  +++ + + ++++ + n ++Vr+alh++      + w         +++++ 
     KOO21031.1 314 DGNQEatgvssagarrpqigsfldhrvrfgaaadgaSEGVPHEGGQEYPCGTGTAATRWCNIPSVREALHMHpeaFYGQPWALQAG--AGMHYTTY 407
                    8544468999************************9766677778888888899999**************9754333345655555..44777888 PP

                    -SBCHHHHHHHHHTT-EEEEEEETT-STT-HHHHHHHHHH....TECTTECCSCCCEEEETTTCESEEEEEEEE...........TTEEEEEETT- CS
  Peptidase_S10 317 sksveeileellesglrvliynGdvDlicnvlgteawikk....lelsgkkefrpwevspkkengqvaGyvkey...........enltfltvkga 397
                    +  + ++++e++++ ++vliynGdvD+++++ ++ +wi++     ++++++++rpw+       ++v+Gyv++y            nltflt+k++
     KOO21031.1 408 TGASYDLYPEIVQH-IPVLIYNGDVDACVPYNSNADWIDSmvtmQGYRVAEPWRPWMLDRGGGAKVVSGYVTSYatapgpfrpdhYNLTFLTIKDS 502
                    899999*******9.*************************888779************9999***************9999997777********* PP

                    -SSHHHHSHHHHHHHHHHHHT CS
  Peptidase_S10 398 GHmvPedkpeealqllerfis 418
                    GHmvP+++p +al++++r+++
     KOO21031.1 503 GHMVPQYQPDRALAFFTRWLD 523
                    *******************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (527 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       343  (0.019131); expected 358.6 (0.02)
Passed bias filter:                      299  (0.0166769); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.24s 00:00:00.73 Elapsed: 00:00:00.38
# Mc/sec: 4128.23
//
Query:       KOO21032.1  [L=630]
Description: protein of unknown function duf1765 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      5e-20   72.2   1.1    8.7e-20   71.4   0.1    1.8  2  DUF1765   Protein of unknown function (DUF1765)


Domain annotation for each model (and alignments):
>> DUF1765  Protein of unknown function (DUF1765)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.1       0.2   3.7e+03     100     113 ..     230     243 ..     227     259 .. 0.71
   2 !   71.4   0.1   4.8e-24   8.7e-20       3     125 .]     303     438 ..     301     438 .. 0.94

  Alignments for each domain:
  == domain 1  score: -1.6 bits;  conditional E-value: 0.2
     DUF1765 100 evfeklflhwsplV 113
                 ++f ++f +w ++V
  KOO21032.1 230 HMFCRFFWEWMQVV 243
                 46777777776665 PP

  == domain 2  score: 71.4 bits;  conditional E-value: 4.8e-24
     DUF1765   3 sllkaiakktslydsnavfllldlleefinileeneks.................elpelldwefwlsvikmmlesdnvqsllrtlsflfniwdliped 84 
                  l+k+ ++k s++d+ av ++l+l+  ++  l    ++                  l + +d+ f+++++  ++es+++q+ll+ + fl+ +wdl+   
  KOO21032.1 303 LLVKITFRKCSVHDVCAVSTTLNLIGSWMASLAARLQAdavrsrteleaapvsqpLLRSTFDFGFFFEGMCLIFESEHAQVLLKGIEFLYRHWDLL--- 398
                 578999**************************9999889***************9999**************************************... PP

     DUF1765  85 eerkkklfldlLlseevfeklflhwsplVRsyyirLLvwri 125
                 +e++  ++  l+l  +++ +l+lhw p VR ++ +L v+r+
  KOO21032.1 399 PEDQAIKLRGLILG-DCYWRLLLHWAPAVRKFFAHLAVFRL 438
                 68888888888888.66669********************7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (630 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       739  (0.0412181); expected 358.6 (0.02)
Passed bias filter:                      412  (0.0229795); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.56u 0.20s 00:00:00.76 Elapsed: 00:00:00.36
# Mc/sec: 5209.19
//
Query:       KOO21033.1  [L=349]
Description: solute carrier family 39 protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.3e-44  152.4  12.4    3.3e-28   98.4   6.1    2.1  2  FPN1      Ferroportin1 (FPN1)


Domain annotation for each model (and alignments):
>> FPN1  Ferroportin1 (FPN1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.9   0.2   1.8e-20   3.3e-16     114     221 ..       2     110 ..       1     115 [. 0.93
   2 !   98.4   6.1   1.8e-32   3.3e-28     251     418 ..     115     286 ..     103     291 .. 0.86

  Alignments for each domain:
  == domain 1  score: 58.9 bits;  conditional E-value: 1.8e-20
        FPN1 114 vllaavakLastaetiaieRdWvvvis.geesaklaklNavlrriDllckllapllvglllsfvslkiaigfilvvnlvsvvveyillakvYrkvpala 211
                 ++ + v+++ ++++ iai +dWv  i  ++++ +l+++N+ +  iDll++ ++pl+ g+ + +++  ++ ++++++n+v+  +e+ ll+ vY ++ ala
  KOO21033.1   2 IVCGVVESIGALISDIAIRKDWVATIWaEGDHEELSSMNSAMASIDLLAESFGPLAAGVAIHLLGADAGFVAVASANVVTFAIELRLLSAVYAENKALA 100
                 67899******************88866**********************************************************************9 PP

        FPN1 212 ekeekkeeee 221
                   +  ++ +e
  KOO21033.1 101 APKPATHMQE 110
                 9887776655 PP

  == domain 2  score: 98.4 bits;  conditional E-value: 1.8e-32
        FPN1 251 vvagWkeYvrqpvfla..slalslLyltVLsF.dtlmtaylkseglsasvisllrgvsavtgilgTfafpllekrigllrtGlislvaqlsclllavas 346
                 +  +W  +++ p+ ++   l++slLy+tVLs+ d + tayl+ +g++++ ++++r+++a++g+lgT  f++l  r gl       l++q++ +  a a 
  KOO21033.1 115 FFTAWPIFIQHPSGIPllVLSYSLLYFTVLSPhDVVLTAYLQIRGVPPAALAAFRAAGALAGVLGTTFFTWLSARAGLRMVATGHLWLQSAAVSGATAC 213
                 6678999999886544227899*********868899****************************************9888888899***999999888 PP

        FPN1 347 vllpgspm.skisvvlllagvalsRlGlwsfdlavtqllQegvpesernvvggvqnslqslldllkfilviia 418
                 ++++  ++   +++ ++la +++sR+Gl++fdla   l+Q  v+e  r+ vg+v+ sl+sl  + +++ + ++
  KOO21033.1 214 FYATHGEVgLSAPMLVFLALIVVSRFGLYGFDLANETLQQLHVDEAYRGSVGAVEKSLCSLGTMSAYVGAFAV 286
                 8776655426788999********************************************9988888766555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (349 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       455  (0.0253779); expected 358.6 (0.02)
Passed bias filter:                      208  (0.0116013); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.27s 00:00:00.69 Elapsed: 00:00:00.38
# Mc/sec: 2727.05
//
Query:       KOO21034.1  [L=311]
Description: protein fucoxanthin chlorophyll a c protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.1e-29  104.1   0.5      6e-29  101.6   0.5    2.1  1  Chloroa_b-bind  Chlorophyll A-B binding protein


Domain annotation for each model (and alignments):
>> Chloroa_b-bind  Chlorophyll A-B binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  101.6   0.5   3.4e-33     6e-29       2     160 ..      34     278 ..      33     279 .. 0.84

  Alignments for each domain:
  == domain 1  score: 101.6 bits;  conditional E-value: 3.4e-33
                     HHHXXSXSTTXSXBXTT-T.T-S.................................................BSHHHHHHHHHHHHHHHHHHHHH CS
  Chloroa_b-bind   2 paeldgslpgdlgfDplglskdp.................................................etlkrlreaEliHGRvAMlavlG 47 
                     p++ldg+l+gd+g Dpl+l ++                                                  ++l+++reaE++H+R+AMla++G
      KOO21034.1  34 PEYLDGTLAGDVGLDPLNLVTKYnsitipaivlretvsaaspeagyktlkrvsnkmfatepitlgantknaeRALMWMREAEVKHARLAMLAAAG 128
                     99******************655789********************************************************************* PP

                     HHHHHHHHH.HTSSSCCCT--....TTTTTTS..........SS-HHHHHH.HHHHHHHHHHHHHHHHHHSTTCSS........-SSSSSSSSHC CS
  Chloroa_b-bind  48 alvpelltk.lsaassfaegpa...waeagkv..........alsvptllalqillligflelareqelkapeseg........eeekrgypGgl 120
                     + ++el  + l   s+ ++ p    ++    +          + +v+ ++ l++ l+i+++e++   ++   + +g          +k ++pG++
      KOO21034.1 129 WPLAELWHGgL---SNLLGLPYeleVT----QgrslsvlnggLGEVAPFM-LAVALAISVVEVKTLDQVYGLTATGktmkpdgtIVMKSYVPGDC 215
                     *****987651...3344444443222....1223455555433444444.47888888999888877776666667889998867899****** PP

                     HHSTTSTT........................TSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
  Chloroa_b-bind 121 gfdplgla.......................kkdeeekaelkekEiknGRlAMiaflgfvvqe 160
                     gfdpl+l                        +  ee+ +e++++EiknGRlAM++++gf++qe
      KOO21034.1 216 GFDPLNLYgwyganigvmedmrakvdpqyqfELIEEARREMETAEIKNGRLAMLGITGFALQE 278
                     *****777777999999999*9*99999999999***************************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (311 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       387  (0.0215851); expected 358.6 (0.02)
Passed bias filter:                      360  (0.0200792); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.24s 00:00:00.68 Elapsed: 00:00:00.40
# Mc/sec: 2351.07
//
Query:       KOO21035.1  [L=541]
Description: hypothetical protein Ctob_001675 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (541 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       650  (0.0362541); expected 358.6 (0.02)
Passed bias filter:                      343  (0.019131); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.54u 0.27s 00:00:00.81 Elapsed: 00:00:00.44
# Mc/sec: 3713.60
//
Query:       KOO21036.1  [L=404]
Description: taurine catabolism dioxygenase like protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.4e-29  101.6   0.3      1e-28  100.9   0.3    1.4  1  TauD      Taurine catabolism dioxygenase TauD, TfdA family
  ------ inclusion threshold ------
       0.14   11.8   0.0       0.25   11.0   0.0    1.4  1  NepR      Anti-sigma factor NepR


Domain annotation for each model (and alignments):
>> TauD  Taurine catabolism dioxygenase TauD, TfdA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  100.9   0.3   1.2e-32     1e-28      13     262 ..     103     396 ..      57     402 .. 0.86

  Alignments for each domain:
  == domain 1  score: 100.9 bits;  conditional E-value: 1.2e-32
        TauD  13 gvdlsdleslddelkeelrellaeygvvvfrgfpl.speqqlefarrfGplygtpgrgtntkygevldvssvyesadianlayttllwHtDls.ylesp 109
                  v+l++++++    +++l   l ++g+v++rg+p+ + ++  ef+ ++ p  g+   +    +++  d +++  +a+  + ++t  + H+D++    +p
  KOO21036.1 103 PVPLAEWADVA---AQVLSTKLVDHGAVLLRGLPIaNSADYNEFIGALEPRVGWTAVKLGGGGTQRKDLQAKVRTASEEPAEHTIEP-HMDMAhSVAHP 197
                 56677765555...889999999********************************999999999999999999999999999*****.*****556666 PP

        TauD 110 pgiqlLhcleapa.tGGetpfvDgraaynaLp.eelpell..........egltavrvyyhyrg.............................gglrte 167
                  +i ++++  +p+  GGet ++D+r++y  L+   +pe++          + ++a+ v + y +                             g+   e
  KOO21036.1 198 KRIAFFCAAGPPKgVGGETVLSDMRRVYATLAqLGIPEQFaahggvayrkRLWSAEKVSHSYTWqqffftqeresavdevrrrdpkarvdeatGRIDFE 296
                 6666666666655899***************944689999887666666555555555555555*****************************9999** PP

        TauD 168 qelpavdkhprtghpvvrthpvltgrkallvn.p........pfatrieglgtpeskelldaleelledpeftyrfqwqeGdlvifdNrrvlHgrtafd 257
                 ++lpav +hp+tg+p++++    t  k+ +   +        p++t +  +g ++++  ++++++++  ++++++++ q Gd++++dN+  +Hgr+ + 
  KOO21036.1 297 EHLPAVWEHPTTGEPLWFNGVH-TNHKSYYEEaEhvdtsdgsPMHTAY-ADGAEIPETTIATVRAAV--WNHSVAVRCQTGDVIVVDNMLAAHGRMGWI 391
                 *********************5.9999999996357889999999999.9999**************..8**************************553 PP

        TauD 258 egeeR 262
                 +g +R
  KOO21036.1 392 SGNQR 396
                 55466 PP

>> NepR  Anti-sigma factor NepR
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   2.8e-05      0.25       7      25 ..     220     238 ..     219     239 .. 0.92

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 2.8e-05
        NepR   7 nLRrlYddvvdEpvPDrFl 25 
                  +Rr+Y+ +++ ++P++F+
  KOO21036.1 220 DMRRVYATLAQLGIPEQFA 238
                 68****************7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (404 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       384  (0.0214178); expected 358.6 (0.02)
Passed bias filter:                      329  (0.0183502); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.48u 0.26s 00:00:00.74 Elapsed: 00:00:00.42
# Mc/sec: 2899.37
//
Query:       KOO21037.1  [L=422]
Description: hypothetical protein Ctob_001673 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.9e-19   67.7   0.6    0.00036   19.9   0.1    4.5  4  EF-hand_1   EF hand
    2.6e-17   61.2   0.1     0.0048   16.7   0.1    4.4  4  EF-hand_6   EF-hand domain
    1.3e-16   60.8   0.5    2.3e-06   28.0   0.1    4.5  3  EF-hand_7   EF-hand domain pair
    7.5e-13   47.3   2.0     0.0023   17.3   0.1    5.1  5  EF-hand_5   EF hand
    6.3e-05   22.7   0.4        1.7    8.5   0.0    3.8  4  EF-hand_8   EF-hand domain pair
  ------ inclusion threshold ------
      0.011   16.1   1.4        2.3    8.6   0.2    2.7  2  DED         Death effector domain
      0.014   16.2   0.0      0.067   14.1   0.0    2.1  2  EF-hand_11  EF-hand domain
        1.4    9.8   5.2       0.28   12.0   1.2    1.9  2  Rotamase_2  PPIC-type PPIASE domain


Domain annotation for each model (and alignments):
>> EF-hand_1  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.6   0.0   1.6e-05     0.036       3      27 ..     181     205 ..     179     207 .. 0.87
   2 !   19.9   0.1   1.6e-07   0.00036       2      25 ..     220     243 ..     219     246 .. 0.90
   3 !   16.2   0.0   2.4e-06    0.0055       3      27 ..     322     346 ..     320     348 .. 0.91
   4 !   13.1   0.0   2.3e-05     0.051       3      28 ..     362     387 ..     360     388 .. 0.91

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 1.6e-05
                 HHHHHHHTTTSSSEEEHHHHHHHHH CS
   EF-hand_1   3 keiFrefDkDgdGkIdfeEfkellk 27 
                  ++F+e+D Dg+ +I++ E  +l +
  KOO21037.1 181 FKLFKEADLDGSHRISYVEVEKLAR 205
                 689**************99987765 PP

  == domain 2  score: 19.9 bits;  conditional E-value: 1.6e-07
                 HHHHHHHHTTTSSSEEEHHHHHHH CS
   EF-hand_1   2 lkeiFrefDkDgdGkIdfeEfkel 25 
                 l+ +++ +DkDg+G+Id  E+ ++
  KOO21037.1 220 LDMLWKAMDKDGSGFIDAGELSRF 243
                 7899****************9876 PP

  == domain 3  score: 16.2 bits;  conditional E-value: 2.4e-06
                 HHHHHHHTTTSSSEEEHHHHHHHHH CS
   EF-hand_1   3 keiFrefDkDgdGkIdfeEfkellk 27 
                  ++F  +D+  +Gk+++eEf+++++
  KOO21037.1 322 HKLFLNMDRKESGKVTIEEFRTACR 346
                 68999*****************997 PP

  == domain 4  score: 13.1 bits;  conditional E-value: 2.3e-05
                 HHHHHHHTTTSSSEEEHHHHHHHHHH CS
   EF-hand_1   3 keiFrefDkDgdGkIdfeEfkellkk 28 
                  +++r +D + +G+I   E+ +++++
  KOO21037.1 362 WRLWRALDENENGFICAGEWGRFMRA 387
                 6789********************96 PP

>> EF-hand_6  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.4   0.0   0.00011      0.25       2      28 ..     180     206 ..     179     212 .. 0.89
   2 !   16.7   0.1   2.1e-06    0.0048       2      23 ..     220     241 ..     219     245 .. 0.87
   3 !   15.3   0.0   6.1e-06     0.014       3      27 ..     322     346 ..     320     352 .. 0.91
   4 !   12.1   0.0   6.5e-05      0.14       2      27 ..     361     386 ..     360     393 .. 0.92

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00011
   EF-hand_6   2 lreaFklfDkdgdGkidaeElrkalrk 28 
                 + ++Fk+ D dg+  i++ E+ k+ r+
  KOO21037.1 180 FFKLFKEADLDGSHRISYVEVEKLARH 206
                 789******************998775 PP

  == domain 2  score: 16.7 bits;  conditional E-value: 2.1e-06
   EF-hand_6   2 lreaFklfDkdgdGkidaeElr 23 
                 l+ ++k++Dkdg+G+ida El 
  KOO21037.1 220 LDMLWKAMDKDGSGFIDAGELS 241
                 67899***************96 PP

  == domain 3  score: 15.3 bits;  conditional E-value: 6.1e-06
   EF-hand_6   3 reaFklfDkdgdGkidaeElrkalr 27 
                 +++F  +D+  +Gk+++eE+r a+r
  KOO21037.1 322 HKLFLNMDRKESGKVTIEEFRTACR 346
                 689********************99 PP

  == domain 4  score: 12.1 bits;  conditional E-value: 6.5e-05
   EF-hand_6   2 lreaFklfDkdgdGkidaeElrkalr 27 
                 l+++++++D + +G+i a E+ +++r
  KOO21037.1 361 LWRLWRALDENENGFICAGEWGRFMR 386
                 7899*********************9 PP

>> EF-hand_7  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.5   0.1   6.7e-05      0.15      42      70 ..     176     204 ..     144     205 .. 0.80
   2 !   28.0   0.1     1e-09   2.3e-06       4      71 .]     220     346 ..     218     346 .. 0.76
   3 !   11.6   0.0   0.00013      0.29       2      31 ..     359     388 ..     358     417 .. 0.87

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 6.7e-05
   EF-hand_7  42 sdeelellfkefDtdkdGvisfdEFlkly 70 
                 +d +  +lfke D+d++++is+ E +kl 
  KOO21037.1 176 DDRSFFKLFKEADLDGSHRISYVEVEKLA 204
                 55667799**************9998875 PP

  == domain 2  score: 28.0 bits;  conditional E-value: 1e-09
   EF-hand_7   4 lkeaFkelDtdgdgyldkeellrllrkifqga...............................................................gegs 39 
                 l + +k++D+dg+g++d  el r+ ++    +                                                                 ++
  KOO21037.1 220 LDMLWKAMDKDGSGFIDAGELSRFTKI-G--KpktltpvqlarlklqaerdrqaaadraaadkrqemhtikkqlqvepasreeleqlsamfskalAKMK 315
                 77889*****************96663.2..23467777777777777888888888888999999999999988888877666666555555532222 PP

   EF-hand_7  40 klsdeelellfkefDtdkdGvisfdEFlklyr 71 
                 +    ++ +lf ++D   +G+++ +EF++++r
  KOO21037.1 316 V-GHVSVHKLFLNMDRKESGKVTIEEFRTACR 346
                 2.335688999999**************9986 PP

  == domain 3  score: 11.6 bits;  conditional E-value: 0.00013
   EF-hand_7   2 eklkeaFkelDtdgdgyldkeellrllrki 31 
                 ekl + +++lD + +g+++  e  r++r++
  KOO21037.1 359 EKLWRLWRALDENENGFICAGEWGRFMRAH 388
                 778889*********************974 PP

>> EF-hand_5  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.7   0.0     0.022        49       4      13 ..     183     192 ..     182     203 .. 0.84
   2 !   17.3   0.1     1e-06    0.0023       6      24 ..     225     243 ..     225     244 .. 0.93
   3 ?   -0.6   0.3      0.49   1.1e+03      17      24 ..     296     303 ..     296     304 .. 0.88
   4 !   12.1   0.0   4.7e-05      0.11       3      23 ..     323     343 ..     321     345 .. 0.90
   5 !    8.9   0.0   0.00047       1.1       6      25 .]     366     385 ..     366     385 .. 0.94

  Alignments for each domain:
  == domain 1  score: 3.7 bits;  conditional E-value: 0.022
                 HHHHH-SS-S CS
   EF-hand_5   4 tFqaiDlNgD 13 
                 +F+++Dl+g+
  KOO21037.1 183 LFKEADLDGS 192
                 7********8 PP

  == domain 2  score: 17.3 bits;  conditional E-value: 1e-06
                 HHH-SS-SSCE-HHHHHHH CS
   EF-hand_5   6 qaiDlNgDGkIskeELktl 24 
                 +a+D++g+G+I++ EL ++
  KOO21037.1 225 KAMDKDGSGFIDAGELSRF 243
                 68**************997 PP

  == domain 3  score: -0.6 bits;  conditional E-value: 0.49
                 -HHHHHHH CS
   EF-hand_5  17 skeELktl 24 
                 s+eEL++l
  KOO21037.1 296 SREELEQL 303
                 89***997 PP

  == domain 4  score: 12.1 bits;  conditional E-value: 4.7e-05
                 HHHHHH-SS-SSCE-HHHHHH CS
   EF-hand_5   3 dtFqaiDlNgDGkIskeELkt 23 
                 ++F  +D   +Gk+++eE++t
  KOO21037.1 323 KLFLNMDRKESGKVTIEEFRT 343
                 57899**************97 PP

  == domain 5  score: 8.9 bits;  conditional E-value: 0.00047
                 HHH-SS-SSCE-HHHHHHHH CS
   EF-hand_5   6 qaiDlNgDGkIskeELktlv 25 
                 +a+D N  G+I + E+ +++
  KOO21037.1 366 RALDENENGFICAGEWGRFM 385
                 799**************997 PP

>> EF-hand_8  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.8   0.0     0.023        51      31      47 ..     183     199 ..     156     207 .. 0.89
   2 !    6.2   0.0    0.0042       9.5      20      44 ..     211     236 ..     197     245 .. 0.77
   3 !    8.5   0.0   0.00077       1.7      23      49 ..     316     342 ..     297     347 .. 0.76
   4 !    6.4   0.0    0.0035       7.9       1      41 [.     332     374 ..     332     376 .. 0.89

  Alignments for each domain:
  == domain 1  score: 3.8 bits;  conditional E-value: 0.023
   EF-hand_8  31 lfrefDtdgdGkisfeE 47 
                 lf+e+D+dg+ +is+ E
  KOO21037.1 183 LFKEADLDGSHRISYVE 199
                 9*********9999865 PP

  == domain 2  score: 6.2 bits;  conditional E-value: 0.0042
   EF-hand_8  20 kk.glseeevdilfrefDtdgdGkis 44 
                    +l +  +d+l +++D dg+G i+
  KOO21037.1 211 SVkQLPPARLDMLWKAMDKDGSGFID 236
                 224599999**************997 PP

  == domain 3  score: 8.5 bits;  conditional E-value: 0.00077
   EF-hand_8  23 lseeevdilfrefDtdgdGkisfeEFc 49 
                 ++   v+ lf  +D++++Gk++ eEF 
  KOO21037.1 316 VGHVSVHKLFLNMDRKESGKVTIEEFR 342
                 555556668889**************6 PP

  == domain 4  score: 6.4 bits;  conditional E-value: 0.0035
   EF-hand_8   1 ekgkItreelrril.rilglkk.glseeevdilfrefDtdgdG 41 
                 e+gk+t ee+r++    l+l    l ee++  l r++D++++G
  KOO21037.1 332 ESGKVTIEEFRTACrEDLHLSTnMLPEEKLWRLWRALDENENG 374
                 589***************9988889999999999999999998 PP

>> DED  Death effector domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.6   0.1    0.0088        20      13      45 ..     154     186 ..     152     191 .. 0.89
   2 ?    8.6   0.2     0.001       2.3      13      50 ..     296     332 ..     280     337 .. 0.90

  Alignments for each domain:
  == domain 1  score: 5.6 bits;  conditional E-value: 0.0088
                 -HHHHHHHHHHCCGCSTTS--TT.S.HHHHHHH CS
         DED  13 teeelesLkfLlkdelpkrklekiksglelfle 45 
                 te+++++L+ L++++l k    + +s+ +lf e
  KOO21037.1 154 TEDDIKELSVLFNEQLAKHYAPDDRSFFKLFKE 186
                 89***************997755599*999986 PP

  == domain 2  score: 8.6 bits;  conditional E-value: 0.001
                 -HHHHHHHHHHCCGCSTTS--TT.S.HHHHHHHHHHCT CS
         DED  13 teeelesLkfLlkdelpkrklekiksglelfleLekrg 50 
                 + eele+L+ ++++ l k k+ +  s ++lfl + +++
  KOO21037.1 296 SREELEQLSAMFSKALAKMKVGH-VSVHKLFLNMDRKE 332
                 689******************99.9*********9886 PP

>> EF-hand_11  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.0       2.7   6.1e+03      50      69 ..     212     231 ..     171     248 .. 0.61
   2 ?   14.1   0.0     3e-05     0.067      21      72 ..     320     375 ..     298     393 .. 0.79

  Alignments for each domain:
  == domain 1  score: -1.9 bits;  conditional E-value: 2.7
                 T----HHHHHHHHHTS-B-T CS
  EF-hand_11  50 vqiltdeqfdrlwselpvna 69 
                 v+ l   ++d lw+ +  + 
  KOO21037.1 212 VKQLPPARLDMLWKAMDKDG 231
                 33344556677777666555 PP

  == domain 2  score: 14.1 bits;  conditional E-value: 3e-05
                 HHHHHHHHH-TT-SSEE-HHHHHHHHHHHT-....---HHHHHHHHHTS-B-TTS- CS
  EF-hand_11  21 aivqefenfdtlksntvsreefraictrrvq....iltdeqfdrlwselpvnakgr 72 
                 ++ + f n+d   s  v+ eefr+ c   +     +l +e++ rlw  l  n +g 
  KOO21037.1 320 SVHKLFLNMDRKESGKVTIEEFRTACREDLHlstnMLPEEKLWRLWRALDENENGF 375
                 4667799*******************9877511126778********999998875 PP

>> Rotamase_2  PPIC-type PPIASE domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.2       2.9   6.6e+03      43      43 ..      99      99 ..      69     163 .. 0.58
   2 ?   12.0   1.2   0.00013      0.28      23      91 ..     253     320 ..     242     323 .. 0.60

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 2.9
  Rotamase_2 43 a 43
                 
  KOO21037.1 99 S 99
                1 PP

  == domain 2  score: 12.0 bits;  conditional E-value: 0.00013
  Rotamase_2  23 ktlelavvkdqvaaeaalalakagae..kdfaalakgnskkaadlgifesasnlpeelakaafalkpgevs 91 
                  +++la  k q++ + + a+ +a a+  +++ +++k+   ++a+    e+ ++l++ + ka++++k+g+vs
  KOO21037.1 253 TPVQLARLKLQAERDRQAAADRAAADkrQEMHTIKKQLQVEPAS---REELEQLSAMFSKALAKMKVGHVS 320
                 55666666655444444444444432114555555555333333...33347799**************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (422 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1351  (0.0753528); expected 358.6 (0.02)
Passed bias filter:                      606  (0.0338); expected 358.6 (0.02)
Passed Vit filter:                        49  (0.002733); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.57u 0.27s 00:00:00.84 Elapsed: 00:00:00.42
# Mc/sec: 3026.07
//
Query:       KOO21038.1  [L=692]
Description: hypothetical protein Ctob_001670 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    0.00079   19.3   0.0      0.033   14.0   0.0    2.2  2  Peptidase_M10  Matrixin
  ------ inclusion threshold ------
      0.012   15.2   0.0       0.02   14.5   0.0    1.2  1  Astacin        Astacin (Peptidase family M12A)
      0.054   13.1   0.2       0.13   11.9   0.1    1.6  2  Reprolysin_4   Metallo-peptidase family M12B Reprolysin-like


Domain annotation for each model (and alignments):
>> Peptidase_M10  Matrixin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.9   0.0     0.014        85      18      47 ..     347     377 ..     333     390 .. 0.86
   2 !   14.0   0.0   5.5e-06     0.033     105     129 ..     574     598 ..     414     604 .. 0.74

  Alignments for each domain:
  == domain 1  score: 2.9 bits;  conditional E-value: 0.014
                    SXHHHHHHHHHHHHHHHHTTSS.SEEEEESS CS
                    xxxxxxxxxxxxxxxxxxxxxx.xxxxxxxx RF
  Peptidase_M10  18 leeeevrkairrAfkvwsevtp.lkFtevkk 47 
                    l+ +++++a+ r f++ws+  + l+F ++++
     KOO21038.1 347 LNCDDIKAALLRGFATWSDNHRlLNFVDISE 377
                    677899**************98799*99865 PP

  == domain 2  score: 14.0 bits;  conditional E-value: 5.5e-06
                    SSEEHHHHHHHHHHHHTTBESXSST CS
                    xxxxxxxxxxxxxxxxxxxxxxxxx RF
  Peptidase_M10 105 qgvslflVaaHEiGHalGLeHssdk 129
                    + ++++   aHE GH+lG +H +++
     KOO21038.1 574 ECYDFEAAMAHETGHVLGFDHPDQR 598
                    56899999*************8765 PP

>> Astacin  Astacin (Peptidase family M12A)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.5   0.0   3.4e-06      0.02      69     103 ..     566     602 ..     563     630 .. 0.82

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 3.4e-06
                 EEEEE-.CCC-SH.HHHHHHHHHHHTB--GGGSTTGG CS
     Astacin  69 qevslg.kgCekl.giivHElmHalGffHeqsRtdrd 103
                 q+++l   +C  + + ++HE++H+lGf H  +R d +
  KOO21038.1 566 QRIYLPcIECYDFeAAMAHETGHVLGFDHPDQRADEN 602
                 667776567877624578****************975 PP

>> Reprolysin_4  Metallo-peptidase family M12B Reprolysin-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.0       0.9   5.4e+03      83     104 ..     400     421 ..     376     423 .. 0.79
   2 ?   11.9   0.1   2.2e-05      0.13     138     169 ..     580     620 ..     571     623 .. 0.81

  Alignments for each domain:
  == domain 1  score: -3.2 bits;  conditional E-value: 0.9
  Reprolysin_4  83 ltstrdskdyDlaallrdtras 104
                   +t   +s+  Dlaa ++ +ras
    KOO21038.1 400 ITTDDGSAHPDLAAYVTTFRAS 421
                   5667789999999999999987 PP

  == domain 2  score: 11.9 bits;  conditional E-value: 2.2e-05
  Reprolysin_4 138 i.fAHEiGHtfGaaHdls........degeglsskteegsg 169
                     +AHE GH +G +H  +         e++ ++ +t+ + +
    KOO21038.1 580 AaMAHETGHVLGFDHPDQradenlvaREACAVNNATCRDAF 620
                   459************87778888888888888888888765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (692 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       407  (0.0227007); expected 358.6 (0.02)
Passed bias filter:                      312  (0.017402); expected 358.6 (0.02)
Passed Vit filter:                        47  (0.00262145); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.57u 0.24s 00:00:00.81 Elapsed: 00:00:00.39
# Mc/sec: 5302.95
//
Query:       KOO21039.1  [L=324]
Description: hypothetical protein Ctob_001092 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.4e-39  135.7   8.3    3.6e-39  135.1   8.3    1.2  1  Peptidase_C1  Papain family cysteine protease


Domain annotation for each model (and alignments):
>> Peptidase_C1  Papain family cysteine protease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  135.1   8.3     2e-43   3.6e-39       2     204 ..      54     288 ..      53     299 .. 0.87

  Alignments for each domain:
  == domain 1  score: 135.1 bits;  conditional E-value: 2e-43
                   TSCEETTT.TTTG.SG---B-T...SSBTHHHHHHHHHHHHHHHHHHS..SS---B-HHHHHHHSTTTSTGGGBB-HHHHHHHHHH.....TEBEBT CS
  Peptidase_C1   2 pesvDwre.kgga.vtpvkdqg...sCGsCWafsavgaledrlaiktk..kklvslSeqelvdCskeenegCnGGlmenafeyikk.....ggivte 86 
                   p+++ w +  g++ +t  ++q+    CGsCWa++a++al dr++i+++  +  v+l+ q+l++C +     C+GG  +  ++++++      g++ e
    KOO21039.1  54 PSNFTWCNnAGVNyCTMSRNQHipqYCGSCWAHGAISALGDRIKIARGaeGIDVNLAVQHLLNCGN--VGSCSGGSIDGPYQWMMEisktgAGVAYE 148
                   888999985444479999***88889********************9988999***********76..579************98776667799999 PP

                   TTS--SSSCS..............................SS-CGCGGGSEEBEESEEEEEESSBHHHHHHHHHHHSSEEEEEECCSHHHHTEESSE CS
  Peptidase_C1  87 kdypYkakeg..............................gkCkkkkkkekvakikgygkvkenseealkkalakngPvsvaidaseedfqlYksGv 153
                   +++pY a ++                              g+C+  ++  + a+i++yg+++ +  +a++k++ ++gP+s+ ida    + +Y++G+
    KOO21039.1 149 TSNPYIACTSdssegfckhvdttckainiartcgsfsqegGTCTGLSSYPN-ATISDYGSISGK--DAMMKEIIARGPISCGIDAGP--LLNYEKGI 240
                   999***76666788999*************888888888888887766555.9********996..89*******************..6******* PP

                   ESSTSCETSS-EEEEEEEEEEEETTEEEEEEE-SBTTTSTBTTEEEEESSS CS
  Peptidase_C1 154 yketecsktelnhavlivGygvengkkyWivkNsWgtdwgekGYiriargk 204
                    +    s++ ++h + +vG+g+e g++yWiv+NsWg+ wge GY+r+a g 
    KOO21039.1 241 ADA---SGEGVDHVISVVGWGNEAGVPYWIVRNSWGEYWGEMGYVRVAFGA 288
                   *98...44579***********************************99774 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (324 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       460  (0.0256568); expected 358.6 (0.02)
Passed bias filter:                      279  (0.0155614); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.21s 00:00:00.68 Elapsed: 00:00:00.40
# Mc/sec: 2431.97
//
Query:       KOO21040.1  [L=416]
Description: amidase signature enzyme [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    7.6e-82  275.7   0.0    1.1e-81  275.2   0.0    1.2  1  Amidase   Amidase


Domain annotation for each model (and alignments):
>> Amidase  Amidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  275.2   0.0   5.9e-86   1.1e-81       3     297 ..      21     341 ..      19     407 .. 0.89

  Alignments for each domain:
  == domain 1  score: 275.2 bits;  conditional E-value: 5.9e-86
                 HHHHHHHHHHHHHHH--EEEEEHCCCCHHHHT---TTT......TTTT-EEEEETTB--TTSB--TTSGG.GTT-B-SS--HHHHHHHHTT-EEEEEE- CS
     Amidase   3 veaflkrieavneklnalvtvfieealaqAakldkkrargkekgpLhGvPisvKDnidvkgvpttaGska.lenypaekDatvverLkkaGavilgkTn 100
                  + f++r+ +v+e+l a+ + ++eeala+A++ d +ra+gk +gpLhG+P+svK++i+ +g+++t+G  + l++ p+e+ a +v++ k+aGa+++ +Tn
  KOO21040.1  21 MRCFIARAIEVDETLRAVTEQAYEEALAEAKACDLERAEGKLRGPLHGLPFSVKEQIRMAGFQSTCGACCrLAEAPSEETALLVTLAKQAGAIPFARTN 119
                 5779**************************************************************98872577788889******************* PP

                 -SGGG-SSSSTT-TT---BBTTCTCCB--SSSHHHHHHHHTTSSSCEEEEESSSTTHHHHHHCTSEEEE--TTSC--TTB-........-SSTTT-EEE CS
     Amidase 101 mdefamgsstensvfgptrNPwdksrtpGGSSGGsAAavAaglvplaiGtDtGGSiRiPAsfcglvGlKPtygrvSragvv........alessldvvG 191
                 +++++m  +t n ++g+t NP+d+ r+pGGS GG+ A++Aa+++pl++GtD+GGS+RiPA ++gl+ +KPt+ r+S++g++        ++   ++  G
  KOO21040.1 120 VPQLLMLPETFNAIYGTTCNPYDLGRSPGGSTGGECALIAARGSPLGLGTDVGGSVRIPAFMTGLCAFKPTVDRLSYKGITvprrgnrsGQREVRSAPG 218
                 *****************************************************************************************9********* PP

                 EEESSHHHHHHHHHHHBS--TT-TTS----.................HHHHHHHH..CTT---TT-EEEEEGGGCSS---CCHHHHHHHHHHHHHCTT- CS
     Amidase 192 plarsvedlalllrvilgedpkdstssvip.................eesedlae..elkkslkglriGvvkedgvasldpevqravekalkaLeeaGh 271
                 p+ar+v dl l++++ +++ +   +++  p                   ++ +++  + ++ +k+lr G+  +d+++++ ++++rav+ +++aL++aGh
  KOO21040.1 219 PIARCVADLELVMHAFCQPAMYAADTTI-PrmpwdrasvahrakgptA-KGPTSPsrRGSEGSKPLRFGYFVTDHWFEPAEACKRAVRGTAEALRAAGH 315
                 *******************998777764.4478*******99999852.333333003344579*********************************** PP

                 EEEEEE-CCGGGHHHHHHHHHHHHHH CS
     Amidase 272 evvevelpsleealslyylilvaeas 297
                 evve+++ +++ea++ly+++l a++ 
  KOO21040.1 316 EVVEFTPLEMAEAAKLYVALLSADGN 341
                 ******************99999984 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (416 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       386  (0.0215294); expected 358.6 (0.02)
Passed bias filter:                      331  (0.0184617); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.24s 00:00:00.72 Elapsed: 00:00:00.41
# Mc/sec: 3054.87
//
Query:       KOO21041.1  [L=375]
Description: hypothetical protein Ctob_001094 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    8.7e-09   34.9   1.0     0.0018   17.9   0.0    2.8  3  TPR_11          TPR repeat
    4.7e-08   32.5   0.5    0.00042   20.2   0.0    2.9  2  TPR_2           Tetratricopeptide repeat
    1.2e-07   31.2   0.1    1.4e-05   24.7   0.0    2.6  2  TPR_1           Tetratricopeptide repeat
    1.6e-07   31.2   0.4      0.011   16.1   0.0    3.0  2  TPR_17          Tetratricopeptide repeat
    6.4e-05   23.4   3.4     0.0033   18.1   0.5    3.8  3  TPR_14          Tetratricopeptide repeat
    0.00011   22.3   2.0    0.00032   20.8   1.7    2.0  1  TPR_9           Tetratricopeptide repeat
    0.00092   20.1   0.0     0.0015   19.4   0.0    1.3  1  2OG-FeII_Oxy_3  2OG-Fe(II) oxygenase superfamily
      0.002   18.2   0.0       0.13   12.6   0.0    2.5  2  TPR_8           Tetratricopeptide repeat
     0.0054   17.0   0.4      0.031   14.6   0.4    2.2  1  TPR_12          Tetratricopeptide repeat
  ------ inclusion threshold ------
       0.01   16.4   2.7       0.01   16.4   2.7    3.0  4  TPR_16          Tetratricopeptide repeat
      0.018   14.9   0.5       0.11   12.3   0.1    2.5  2  TPR_10          Tetratricopeptide repeat
      0.041   14.4   2.0      0.041   14.4   2.0    2.9  3  TPR_19          Tetratricopeptide repeat
      0.048   13.7   0.0        2.2    8.5   0.0    2.7  2  TPR_7           Tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> TPR_11  TPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.0       2.6   3.6e+03      27      35 ..     245     253 ..     243     260 .. 0.79
   2 !   17.9   0.0   1.3e-06    0.0018       7      42 .]     259     294 ..     253     294 .. 0.91
   3 !   15.7   0.2   6.4e-06    0.0088      12      40 ..     298     326 ..     292     327 .. 0.86

  Alignments for each domain:
  == domain 1  score: -2.3 bits;  conditional E-value: 2.6
      TPR_11  27 naeayynLG 35 
                 + e++y LG
  KOO21041.1 245 DHEIWYDLG 253
                 5689****9 PP

  == domain 2  score: 17.9 bits;  conditional E-value: 1.3e-06
      TPR_11   7 qGkyeeAieaYkkAlkldPdnaeayynLGlayykqG 42 
                 +G  eeA+ +Y++A +l+P +  ++ n+G+a++++G
  KOO21041.1 259 LGVPEEALWNYERAEALNPRDSLLLTNMGVALAELG 294
                 55569****************************998 PP

  == domain 3  score: 15.7 bits;  conditional E-value: 6.4e-06
      TPR_11  12 eAieaYkkAlkldPdnaeayynLGlayyk 40 
                  A  aY++Al++dP n++a +  G++++k
  KOO21041.1 298 RAFVAYRRALAIDPYNVNARLSAGELLLK 326
                 57789*******************99876 PP

>> TPR_2  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.7   0.1    0.0007      0.96       2      34 .]     247     279 ..     246     279 .. 0.95
   2 !   20.2   0.0   3.1e-07   0.00042       3      34 .]     282     313 ..     280     313 .. 0.93

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 0.0007
       TPR_2   2 ealynlGlayyklgdyeeAleafekAleldPnn 34 
                 e++y lG  + +lg +eeAl  +e+A +l+P++
  KOO21041.1 247 EIWYDLGTRAHELGVPEEALWNYERAEALNPRD 279
                 89*****************************86 PP

  == domain 2  score: 20.2 bits;  conditional E-value: 3.1e-07
       TPR_2   3 alynlGlayyklgdyeeAleafekAleldPnn 34 
                 +l n+G a+++lg++ +A  a+++Al++dP n
  KOO21041.1 282 LLTNMGVALAELGQPRRAFVAYRRALAIDPYN 313
                 6789**************************76 PP

>> TPR_1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.1   0.0     0.034        46       3      34 .]     248     279 ..     246     279 .. 0.81
   2 !   24.7   0.0     1e-08   1.4e-05       3      34 .]     282     313 ..     280     313 .. 0.94

  Alignments for each domain:
  == domain 1  score: 4.1 bits;  conditional E-value: 0.034
                 HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH CS
       TPR_1   3 alynlGnayfklgkydeAleyyekALelnPnn 34 
                 ++y lG   ++lg ++eAl  ye+A  lnP +
  KOO21041.1 248 IWYDLGTRAHELGVPEEALWNYERAEALNPRD 279
                 677777777777888999999*********75 PP

  == domain 2  score: 24.7 bits;  conditional E-value: 1e-08
                 HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH CS
       TPR_1   3 alynlGnayfklgkydeAleyyekALelnPnn 34 
                  l n+G+a+ +lg++  A  +y++AL ++P n
  KOO21041.1 282 LLTNMGVALAELGQPRRAFVAYRRALAIDPYN 313
                 589***************************76 PP

>> TPR_17  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.0   7.6e-06     0.011       2      32 ..     269     299 ..     268     300 .. 0.93
   2 !   12.2   0.1   0.00014      0.19       1      28 [.     302     329 ..     302     334 .. 0.90

  Alignments for each domain:
  == domain 1  score: 16.1 bits;  conditional E-value: 7.6e-06
      TPR_17   2 ylkaleldPnnadaynnLAelllknGdlmtA 32 
                 y++a +l+P ++ +++n++++l+++G++++A
  KOO21041.1 269 YERAEALNPRDSLLLTNMGVALAELGQPRRA 299
                 7777789**********************98 PP

  == domain 2  score: 12.2 bits;  conditional E-value: 0.00014
      TPR_17   1 lylkaleldPnnadaynnLAelllknGd 28 
                 +y++al++dP n++a    +elllk+ +
  KOO21041.1 302 AYRRALAIDPYNVNARLSAGELLLKARR 329
                 59*********************98765 PP

>> TPR_14  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.8   0.1     6e-05     0.082       2      42 ..     247     287 ..     246     289 .. 0.93
   2 !   18.1   0.5   2.4e-06    0.0033       8      42 ..     287     321 ..     286     323 .. 0.89
   3 ?    2.1   0.7      0.34   4.7e+02       2      40 ..     315     354 ..     314     359 .. 0.72

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 6e-05
      TPR_14   2 eallalaeallalGdpdeAiallrralalaPddaeawllla 42 
                 e +++l+    +lG p+eA+  ++ra al+P d  +++ ++
  KOO21041.1 247 EIWYDLGTRAHELGVPEEALWNYERAEALNPRDSLLLTNMG 287
                 78********************************9999887 PP

  == domain 2  score: 18.1 bits;  conditional E-value: 2.4e-06
      TPR_14   8 aeallalGdpdeAiallrralalaPddaeawllla 42 
                 + al++lG+p++A  ++rrala +P +  a+l  +
  KOO21041.1 287 GVALAELGQPRRAFVAYRRALAIDPYNVNARLSAG 321
                 5689***********************99998665 PP

  == domain 3  score: 2.1 bits;  conditional E-value: 0.34
      TPR_14   2 eallalaeallalGdpdeAiallrralala.Pddaeawll 40 
                 +a+l ++e+ll ++++++ + ll +a      +d  +++l
  KOO21041.1 315 NARLSAGELLLKARRLRGLEVLLAEAPVESlAADVGLQRL 354
                 79999*****************999943331344444444 PP

>> TPR_9  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.8   1.7   2.3e-07   0.00032       9      66 ..     260     317 ..     252     324 .. 0.89

  Alignments for each domain:
  == domain 1  score: 20.8 bits;  conditional E-value: 2.3e-07
       TPR_9   9 edweralavverllllaPddpeerrdRGlllaqlGclsaAladLeaylalapdapdae 66 
                    e+al+ +er  +l+P+d  ++   G++la+lG+++ A  +  ++la++p +  a+
  KOO21041.1 260 GVPEEALWNYERAEALNPRDSLLLTNMGVALAELGQPRRAFVAYRRALAIDPYNVNAR 317
                 55789***********************************************776665 PP

>> 2OG-FeII_Oxy_3  2OG-Fe(II) oxygenase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.4   0.0   1.1e-06    0.0015      15      95 ..     164     233 ..     151     234 .. 0.78

  Alignments for each domain:
  == domain 1  score: 19.4 bits;  conditional E-value: 1.1e-06
                     E-SS----TT.-.EEEEEEEEE....ET-B--EEE..........---TT-EEEEE-..B-TEEE--B.-SS-EEEEEEEE CS
  2OG-FeII_Oxy_3  15 HvDnfekeegsgqrrltvllyLnekeseeGGelelyekdkeavkikpkkgrlvlFesdellpHevlpvtkggeRlsltgwi 95 
                     H+       ++++  +++++ L+e+++++GG   +   ++  + i+ ++g ++l +s  +  H++ ++t+g eR++l++++
      KOO21041.1 164 HQP-----IHRDHSLISCVVPLSERREYSGGGTFI---EPLGRAIALEQGCALLHPSAVR--HAGHRITAG-ERWVLVLFL 233
                     444.....3456799*******999999***9999...555677777**********766..******875.*****9987 PP

>> TPR_8  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.1   0.0       0.1   1.4e+02       2      33 ..     247     278 ..     246     279 .. 0.91
   2 !   12.6   0.0   9.1e-05      0.13       4      33 ..     283     312 ..     282     313 .. 0.93

  Alignments for each domain:
  == domain 1  score: 3.1 bits;  conditional E-value: 0.1
                 CHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH CS
       TPR_8   2 eayynlgsiylklgdyeeAkeyyekaleldpd 33 
                 e++y lg   ++lg  eeA   ye+a  l+p 
  KOO21041.1 247 EIWYDLGTRAHELGVPEEALWNYERAEALNPR 278
                 79*****999**********99***9999996 PP

  == domain 2  score: 12.6 bits;  conditional E-value: 9.1e-05
                 HHHHHHHHHHTT-HHHHHHHHHHHHHHHHH CS
       TPR_8   4 yynlgsiylklgdyeeAkeyyekaleldpd 33 
                 + n+g ++ +lg+   A  +y++al +dp 
  KOO21041.1 283 LTNMGVALAELGQPRRAFVAYRRALAIDPY 312
                 6799************************95 PP

>> TPR_12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.6   0.4   2.2e-05     0.031       7      75 ..     250     310 ..     244     311 .. 0.77

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 2.2e-05
      TPR_12   7 nnlaavlrrlgrydeAlellekaleiarrllGpdhpltattlrnLgrlyralgryeeAlelleealaia 75 
                 + l++  ++lg  +eAl ++e+a    ++l    +p  +  l n+g ++ +lg+++ A  ++++alai+
  KOO21041.1 250 YDLGTRAHELGVPEEALWNYERA----EAL----NPRDSLLLTNMGVALAELGQPRRAFVAYRRALAID 310
                 55666666677777777777777....433....4446789**************************96 PP

>> TPR_16  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.7       5.7   7.8e+03      43      53 ..      16      26 ..      10      39 .. 0.48
   2 ?    3.8   0.1     0.065        90      23      63 ..     235     275 ..     231     280 .. 0.66
   3 ?   16.4   2.7   7.5e-06      0.01       1      67 [.     250     313 ..     250     314 .. 0.94
   4 ?   11.5   1.1   0.00026      0.36       3      50 ..     286     330 ..     284     332 .. 0.91

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 5.7
      TPR_16 43 aalrqgrlaeA 53
                aa+++ +l + 
  KOO21041.1 16 AAAHAAELLAS 26
                33333222222 PP

  == domain 2  score: 3.8 bits;  conditional E-value: 0.065
      TPR_16  23 alkrdpssPdaaeAllllgdaalrqgrlaeAa.alyraalra 63 
                 +l+r   +  ++e ++ lg  a ++g  +eA+  + ra+ + 
  KOO21041.1 235 TLAREVTEESDHEIWYDLGTRAHELGVPEEALwNYERAE-AL 275
                 566666666688888888888888888888885555554.34 PP

  == domain 3  score: 16.4 bits;  conditional E-value: 7.5e-06
      TPR_16   1 lalaraalragdyddAaaaleaalkrdpssPdaaeAllllgdaalrqgrlaeAaalyraalraapda 67 
                 ++l++ a ++g +++A+  +e+a +++   P++   l + g+a++++g   +A  +yr+al+ +p++
  KOO21041.1 250 YDLGTRAHELGVPEEALWNYERAEALN---PRDSLLLTNMGVALAELGQPRRAFVAYRRALAIDPYN 313
                 6788888899999**************...88888******************************86 PP

  == domain 4  score: 11.5 bits;  conditional E-value: 0.00026
      TPR_16   3 laraalragdyddAaaaleaalkrdpssPdaaeAllllgdaalrqgrl 50 
                 ++ a++++g++++A  a+++al+ d   P ++ A+l  g+++l++ rl
  KOO21041.1 286 MGVALAELGQPRRAFVAYRRALAID---PYNVNARLSAGELLLKARRL 330
                 677999*******************...99*************99887 PP

>> TPR_10  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.0         2   2.8e+03      16      23 ..     269     276 ..     255     282 .. 0.71
   2 ?   12.3   0.1   8.3e-05      0.11       5      31 ..     283     309 ..     281     309 .. 0.96

  Alignments for each domain:
  == domain 1  score: -1.6 bits;  conditional E-value: 2
      TPR_10  16 grydeAea 23 
                 ++++eA++
  KOO21041.1 269 YERAEALN 276
                 45556665 PP

  == domain 2  score: 12.3 bits;  conditional E-value: 8.3e-05
      TPR_10   5 lnNLanalrqrgrydeAealleealai 31 
                 l+N+++al ++g+  +A   +++alai
  KOO21041.1 283 LTNMGVALAELGQPRRAFVAYRRALAI 309
                 89***********************97 PP

>> TPR_19  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.3       7.4     1e+04       4      17 ..      14      27 ..      10      30 .. 0.60
   2 ?    7.3   0.1     0.005         7       7      44 ..     262     299 ..     256     299 .. 0.91
   3 ?   14.4   2.0     3e-05     0.041       2      52 ..     291     341 ..     290     358 .. 0.82

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 7.4
      TPR_19  4 egdyaeAlalleqa 17
                ++  a A++ll++a
  KOO21041.1 14 ANAAAHAAELLASA 27
                44455566666555 PP

  == domain 2  score: 7.3 bits;  conditional E-value: 0.005
      TPR_19   7 yaeAlalleqalqedpknaearllLAeallalgqldeA 44 
                 ++eAl  +e+a + +p ++ ++ ++  al +lgq+  A
  KOO21041.1 262 PEEALWNYERAEALNPRDSLLLTNMGVALAELGQPRRA 299
                 6899999***************************9776 PP

  == domain 3  score: 14.4 bits;  conditional E-value: 3e-05
      TPR_19   2 laegdyaeAlalleqalqedpknaearllLAeallalgqldeAealLdalp 52 
                  + g++ +A  ++++al+ dp n +arl   e+ll++ +l   e lL+++p
  KOO21041.1 291 AELGQPRRAFVAYRRALAIDPYNVNARLSAGELLLKARRLRGLEVLLAEAP 341
                 5779*********************************99876666666655 PP

>> TPR_7  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.0   0.0      0.19   2.6e+02      11      30 ..     258     275 ..     252     280 .. 0.78
   2 ?    8.5   0.0    0.0016       2.2       2      34 ..     283     313 ..     282     315 .. 0.87

  Alignments for each domain:
  == domain 1  score: 2.0 bits;  conditional E-value: 0.19
       TPR_7  11 rlGdyeeAielyeqsLaltk 30 
                 +lG  eeA++ ye+  a + 
  KOO21041.1 258 ELGVPEEALWNYER--AEAL 275
                 578889*******9..6554 PP

  == domain 2  score: 8.5 bits;  conditional E-value: 0.0016
       TPR_7   2 LlnLarlysrlGdyeeAielyeqsLaltkdped 34 
                 L n++++  +lG+ ++A   y++  al+ dp++
  KOO21041.1 283 LTNMGVALAELGQPRRAFVAYRR--ALAIDPYN 313
                 89*********************..77766665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (375 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       304  (0.0169558); expected 358.6 (0.02)
Passed bias filter:                      269  (0.0150036); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                        13  (0.000725082); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 0.46u 0.26s 00:00:00.72 Elapsed: 00:00:00.42
# Mc/sec: 2653.84
//
Query:       KOO21042.1  [L=294]
Description: reversion-to-ethylene sensitivity1 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.5e-19   71.1   0.1    4.8e-13   49.9   0.1    2.2  2  DUF778    Protein of unknown function (DUF778)
    0.00084   19.0   0.0     0.0013   18.4   0.0    1.2  1  DUF4796   Domain of unknown function (DUF4796)


Domain annotation for each model (and alignments):
>> DUF778  Protein of unknown function (DUF778)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.9   0.1   5.3e-17   4.8e-13       4      64 ..      82     137 ..      79     141 .. 0.90
   2 !   19.0   0.0   1.6e-07    0.0014     134     185 ..     142     193 ..     138     197 .. 0.85

  Alignments for each domain:
  == domain 1  score: 49.9 bits;  conditional E-value: 5.3e-17
      DUF778   4 vswlfPfiGHvgicnseGvildFagsyyvaveklafGaparywqlkpllmesrarrtrreP 64 
                 ++w++P++GHvg+ + +G i+dFag  +v  + +afG+pary+ql+p     ra+r    P
  KOO21042.1  82 LTWVAPYVGHVGLGDRDGIIHDFAGR-HVGRDAMAFGWPARYLQLDP----ARASRSAGAP 137
                 89**********************96.79******************....7777766555 PP

  == domain 2  score: 19.0 bits;  conditional E-value: 1.6e-07
      DUF778 134 PdlsssseefqgeeynLltanchsfvalaLnklryedeedwgvvklailvlv 185
                  ++s+++  f++ ey Llt nchsf a  Ln ++++ e + g + l+   +v
  KOO21042.1 142 AEVSHAADAFEKVEYGLLTWNCHSFLAGFLNAIEHTPEGQPGSFGLLRTWTV 193
                 67899999************************99998888887777766655 PP

>> DUF4796  Domain of unknown function (DUF4796)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.4   0.0   1.4e-07    0.0013      48     156 ..      67     177 ..      59     184 .. 0.83

  Alignments for each domain:
  == domain 1  score: 18.4 bits;  conditional E-value: 1.4e-07
     DUF4796  48 akkepcsivvkpteG.dfleeyenekdLHigitdskgkvveydkkGvqkdee..kWeqcv.lvekvseslle..qwdevLeqvsseekwskerYeeesh 140
                 a++ pc++v  p +  +++  y      H+g+ d +g + ++  + v +d +  +W      +++ + s  +   +d   e   ++++++k +Y   ++
  KOO21042.1  67 AHRYPCCLVWTPIHPlTWVAPYV----GHVGLGDRDGIIHDFAGRHVGRDAMafGWPARYlQLDPARASRSAgaPLDWAAEVSHAADAFEKVEYGLLTW 161
                 78999999999999877888887....5***************9999988762267544337777766655444888888888999************* PP

     DUF4796 141 nCydfvLeflkalkla 156
                 nC++f   fl+a++++
  KOO21042.1 162 NCHSFLAGFLNAIEHT 177
                 ************9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (294 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       432  (0.024095); expected 358.6 (0.02)
Passed bias filter:                      244  (0.0136092); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.46u 0.25s 00:00:00.71 Elapsed: 00:00:00.42
# Mc/sec: 2100.39
//
Query:       KOO21043.1  [L=856]
Description: hypothetical protein Ctob_001078 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (856 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       491  (0.0273858); expected 358.6 (0.02)
Passed bias filter:                      368  (0.0205254); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.62u 0.27s 00:00:00.89 Elapsed: 00:00:00.45
# Mc/sec: 5722.64
//
Query:       KOO21044.1  [L=162]
Description: tctex1 domain-containing protein 2, partial [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    8.3e-27   93.4   0.0      1e-26   93.1   0.0    1.1  1  Tctex-1   Tctex-1 family


Domain annotation for each model (and alignments):
>> Tctex-1  Tctex-1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   93.1   0.0   5.7e-31     1e-26       1     103 []      62     160 ..      62     160 .. 0.97

  Alignments for each domain:
  == domain 1  score: 93.1 bits;  conditional E-value: 5.7e-31
                 HHHHHHHHHHHHHHCTSSS--CCCHHHHHHHHHHHHHHHHHHHTS.SS..SCEEEEEEEEEETTTS-EEEEEEEES-TTT-EEEEEEECTTSEEEEEEE CS
     Tctex-1   1 elkqiakealesalesaesYdhekveqwnstiinsilkalksestelelpryKfivnvtivqkkgqgmhsasgaywdektDgmvsfkyenkgldvvvtv 99 
                 e+k+i+   l++ l +++ Y++e ++qw++++++ i++++k   t+lelpryK++v+v+i++ +g+g+++ ++++wd +tD+++  +y+n++l++v+  
  KOO21044.1  62 EVKKIIGSYLNEFLADKT-YSPELTAQWTRELADGIKQSIK---TQLELPRYKIVVQVVIGEMRGEGVRMGCRCFWDADTDNYADESYRNDSLFCVAAA 156
                 69**************97.**********************...6788*************************************************** PP

                 EEEE CS
     Tctex-1 100 fwva 103
                 f+v+
  KOO21044.1 157 FGVY 160
                 *997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (162 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       497  (0.0277205); expected 358.6 (0.02)
Passed bias filter:                      481  (0.026828); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.25s 00:00:00.65 Elapsed: 00:00:00.39
# Mc/sec: 1236.53
//
Query:       KOO21045.1  [L=822]
Description: penicillin-resistant dd-carboxypeptidase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.1e-22   79.9   0.3    2.5e-07   30.8   0.0    3.7  3  PG_binding_1  Putative peptidoglycan binding domain
    7.3e-18   65.1   0.0    1.2e-17   64.4   0.0    1.3  1  Popeye        Popeye protein conserved region
    1.6e-11   44.3   6.9       0.14   12.4   0.1    6.0  6  PG_binding_3  Predicted Peptidoglycan domain
    4.7e-06   26.6   1.1    8.6e-06   25.8   0.0    2.1  2  cNMP_binding  Cyclic nucleotide-binding domain


Domain annotation for each model (and alignments):
>> PG_binding_1  Putative peptidoglycan binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.8   0.0   5.7e-11   2.5e-07      21      57 .]     483     519 ..     475     519 .. 0.94
   2 !   17.1   0.0     1e-06    0.0046       4      42 ..     546     585 ..     544     587 .. 0.86
   3 !   27.7   0.0     5e-10   2.3e-06       2      44 ..     723     766 ..     722     775 .. 0.88

  Alignments for each domain:
  == domain 1  score: 30.8 bits;  conditional E-value: 5.7e-11
                   SSSSB--HHHHHHHHHHHHHTTST-SSSBSHHHHHHH CS
  PG_binding_1  21 padgtfgpateeaVkefQqffgLpvtGildpaTlaal 57 
                   ++dg+fgp t++aV  fQ + gL ++G ++p T++al
    KOO21045.1 483 KVDGNFGPLTQQAVELFQIKCGLRADGTVGPITWTAL 519
                   79********************************997 PP

  == domain 2  score: 17.1 bits;  conditional E-value: 1e-06
                   HHHHHHHHHHHTT--.S.SSSSB--HHHHHHHHHHHHHTT CS
  PG_binding_1   4 dvkelqryLsrlGylsg.padgtfgpateeaVkefQqffg 42 
                   dv  lq++L+      + ++dg++gp te+aV++f  + g
    KOO21045.1 546 DVVMLQQKLQLVMGEHIcKVDGVYGPRTEAAVQAFMAQSG 585
                   8999********776558****************965555 PP

  == domain 3  score: 27.7 bits;  conditional E-value: 5e-10
                   SHHHHHHHHHHHHTT--..SSSSSB--HHHHHHHHHHHHHTTST CS
  PG_binding_1   2 gedvkelqryLsrlGyl.sgpadgtfgpateeaVkefQqffgLp 44 
                   +ed+k lq +L+        ++dg++gp t++aV +fQ++fg+p
    KOO21045.1 723 DEDIKMLQLFLNEVMGReLVKPDGVYGPRTRQAVLDFQSRFGMP 766
                   589***********554266**********************98 PP

>> Popeye  Popeye protein conserved region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.4   0.0   2.6e-21   1.2e-17       3     133 ..      83     298 ..      81     303 .. 0.94

  Alignments for each domain:
  == domain 1  score: 64.4 bits;  conditional E-value: 2.6e-21
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxx RF
      Popeye   3 hllfhlanillllaflapsgvlgllvlrsllvlGflllalwawlvvCaldiflWnlllvlinlaqllyllyklrp.vkfekeleelYkklFqplkvsrk 100
                 +l+ h+a++l ++afl p+  l+l++l+++ ++++l++++++ +  + +  f Wn+l++ in  ++  +l    +  ++++++ +l+k++F+  +vs  
  KOO21045.1  83 ELFGHTAFALAATAFLDPDI-LNLRLLSVASGAATLIFTYYHPVGRPLWLPFGWNVLFMTINAGHIYSILSSKWEaERMPPQAVDLWKAVFSHQGVSAV 180
                 6789**************99.8999999**************************************9988766551567******************** PP

                 xxxxxxxxxxxxxx..................................................................................... RF
      Popeye 101 eFkklvseeeakil..................................................................................... 114
                 +F+kl+ +  ++++                                                                                     
  KOO21045.1 181 DFNKLLAC--GTWTtlrkgtalqaegqpsasifllvqggadvsvggtkthrlsqhqfigdmglssgiaisqpvrgvatvttnqqttclvwsraalhell 277
                 *******5..445456*********************************************************************************** PP

                 ..xxxxxxxxxxxxxxxxxxx RF
      Popeye 115 ..eryLaavfsvligkDiteK 133
                   e++L+a+f+ ++ +D+ +K
  KOO21045.1 278 erEPMLRAAFQRALSADVLRK 298
                 *******************99 PP

>> PG_binding_3  Predicted Peptidoglycan domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.0      0.48   2.2e+03      45      74 ..     371     400 ..     369     401 .. 0.88
   2 !    8.6   0.0   0.00048       2.2      16      32 ..     481     497 ..     477     504 .. 0.86
   3 !    8.1   0.0   0.00069       3.1      17      33 ..     505     522 ..     498     536 .. 0.77
   4 !   12.4   0.1   3.1e-05      0.14       3      33 ..     547     579 ..     546     595 .. 0.75
   5 ?    0.4   0.2      0.18   8.2e+02      15      40 ..     594     618 ..     583     631 .. 0.71
   6 !   12.3   0.0   3.6e-05      0.16       3      31 ..     726     756 ..     724     762 .. 0.77

  Alignments for each domain:
  == domain 1  score: -1.0 bits;  conditional E-value: 0.48
                   HHHHHHHHHHHHHHHHHHSTHHHHHHHHHH CS
  PG_binding_3  45 ainlarrefyldlaerritnerflrGWvkr 74 
                   ++ la+ +   ++++ +++++  l GW+++
    KOO21045.1 371 RLQLAQFRQIHRVSDEEHAEQLRLLGWTAK 400
                   77889999999*********999****975 PP

  == domain 2  score: 8.6 bits;  conditional E-value: 0.00048
                   .S---S---HHHHHHH. CS
  PG_binding_3  16 dvkvDGiiGpkTlaAve 32 
                    +kvDG++Gp T +Ave
    KOO21045.1 481 ALKVDGNFGPLTQQAVE 497
                   579*************6 PP

  == domain 3  score: 8.1 bits;  conditional E-value: 0.00069
                   S---S---HHHHHHH... CS
  PG_binding_3  17 vkvDGiiGpkTlaAve.a 33 
                   +++DG +Gp T +A++ a
    KOO21045.1 505 LRADGTVGPITWTALRrA 522
                   79*************641 PP

  == domain 4  score: 12.4 bits;  conditional E-value: 3.1e-05
                   HHHHHHHH....T.....S---S---HHHHHHH.. CS
  PG_binding_3   3 ivilQriL....gklgydvkvDGiiGpkTlaAvea 33 
                   +v+lQ+ L    g      kvDG+ Gp+T aAv+a
    KOO21045.1 547 VVMLQQKLqlvmG--EHICKVDGVYGPRTEAAVQA 579
                   6889998864333..34579*************83 PP

  == domain 5  score: 0.4 bits;  conditional E-value: 0.18
                   ..S---S--.-HHHHHHH...HHS-HH CS
  PG_binding_3  15 ydvkvDGii.GpkTlaAvearasaded 40 
                     + +DG++ G +T  Av  ++sa+  
    KOO21045.1 594 ERTPADGAVaGTRTEGAV--AGSAGAS 618
                   56789**9879*******..5555544 PP

  == domain 6  score: 12.3 bits;  conditional E-value: 3.6e-05
                   HHHHHHHH....T.....S---S---HHHHHHH CS
  PG_binding_3   3 ivilQriL....gklgydvkvDGiiGpkTlaAv 31 
                   i++lQ  L    g     vk+DG+ Gp+T++Av
    KOO21045.1 726 IKMLQLFLnevmG--RELVKPDGVYGPRTRQAV 756
                   7888988854322..3459*************9 PP

>> cNMP_binding  Cyclic nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.8   0.0   1.9e-09   8.6e-06       3      88 ..     193     279 ..     191     280 .. 0.88
   2 ?   -3.0   0.3       1.8   8.1e+03      41      68 ..     602     627 ..     590     635 .. 0.55

  Alignments for each domain:
  == domain 1  score: 25.8 bits;  conditional E-value: 1.9e-09
                   EE-TT-EEE-TTSB-SEEEEEEES-EEEEEEETTS.EEEEEEE-TTEEESHHHHH.....HTS-..-SSEEEESSTEEEEEEEHHHHHHHHHH CS
  cNMP_binding   3 sfkagevifrqGdpadslyivlsGevrvyrlsedgkevvlavlgpGdlfGelall.....tgep..rtatvvAltdsellalprddflellqq 88 
                    +++g+ +  +G+p  s++++++G + v    + g +  +++l++ +++G+++l        +p    atv++  ++++l+ +r++++ell++
    KOO21045.1 193 TLRKGTALQAEGQPSASIFLLVQGGADV----SVGGT-KTHRLSQHQFIGDMGLSsgiaiS-QPvrGVATVTTNQQTTCLVWSRAALHELLER 279
                   589*************************....34444.6789*************999963.55448999********************987 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 1.8
                   EEEEE-TTEEESHHHHHHTS--SSEEEE CS
  cNMP_binding  41 vlavlgpGdlfGelalltgeprtatvvA 68 
                   v ++ ++G++ G  ++    +  at+vA
    KOO21045.1 602 VAGTRTEGAVAGSAGASA--TAVATAVA 627
                   455666777777766664..33444443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (822 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       691  (0.0385409); expected 358.6 (0.02)
Passed bias filter:                      372  (0.0207485); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.62u 0.29s 00:00:00.90 Elapsed: 00:00:00.43
# Mc/sec: 5695.90
//
Query:       KOO21046.1  [L=677]
Description: hsd3b1 protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.9e-39  135.4   0.0    2.6e-39  134.9   0.0    1.1  1  3Beta_HSD        3-beta hydroxysteroid dehydrogenase/isomeras
    2.4e-27   96.0   0.0    3.4e-27   95.5   0.0    1.2  1  Epimerase        NAD dependent epimerase/dehydratase family
    8.3e-17   61.6   0.0    1.2e-16   61.1   0.0    1.1  1  GDP_Man_Dehyd    GDP-mannose 4,6 dehydratase
    3.5e-15   55.9   2.1    5.1e-13   48.8   0.0    2.2  2  NAD_binding_4    Male sterility protein
      1e-11   45.3   0.6    2.4e-11   44.1   0.6    1.5  1  Polyketide_cyc2  Polyketide cyclase / dehydrase and lipid tra
      4e-09   36.0   0.0    6.6e-09   35.3   0.0    1.2  1  RmlD_sub_bind    RmlD substrate binding domain
    7.3e-08   32.7   0.1    1.4e-07   31.8   0.1    1.4  1  Polyketide_cyc   Polyketide cyclase / dehydrase and lipid tra
    1.3e-05   25.2   0.0    2.5e-05   24.3   0.0    1.3  1  NAD_binding_10   NAD(P)H-binding
    2.1e-05   23.8   0.0    0.00018   20.8   0.0    2.0  1  Polysacc_synt_2  Polysaccharide biosynthesis protein
     0.0005   20.0   0.0    0.00091   19.2   0.0    1.4  1  KR               KR domain
  ------ inclusion threshold ------
      0.014   15.6   0.0      0.026   14.7   0.0    1.4  1  AHSA1            Activator of Hsp90 ATPase homolog 1-like pro


Domain annotation for each model (and alignments):
>> 3Beta_HSD  3-beta hydroxysteroid dehydrogenase/isomerase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  134.9   0.0   1.6e-42   2.6e-39       1     250 [.     271     528 ..     271     541 .. 0.85

  Alignments for each domain:
  == domain 1  score: 134.9 bits;  conditional E-value: 1.6e-42
   3Beta_HSD   1 vvtGgaGFlGralvkeLvrleelkevrvlDlrespelleelskvnvkk........viegDvtdkdkleealegv..dvvihlaslvdvag.kltedei 88 
                 vvtGg+GFlG+++v+ L  l+ +  v+v+D++  ++ +      n  k        v++  +td++ l+e    +    v+h+asl+d++    ++d +
  KOO21046.1 271 VVTGGCGFLGAHIVRLLCLLDGVTSVHVIDVQLPQPDSGLPMAANGCKwrgggkveVHQMSITDTPALDELFTRIrpTTVFHTASLIDLRDdAASQDAL 369
                 8*****************************98776665544444433334477778***************99883358***********9788999** PP

   3Beta_HSD  89 mkvnvkGTrnvleacvkagvrvlvYtSsaevvgpnslgeeilngdEeleyeslhqdaypesKalaEklvlkaNgrtlknggrlyTcaLRpagiyG...e 184
                  +vnv GTr +l+ + ++g +++vYtSs+e  +   ++  ++ +dEe +y   +++ y+++K  aE+lvl+aN       +++ T+++Rpa i G   e
  KOO21046.1 370 EHVNVDGTRALLALAAQHGATRFVYTSSIECTYA--YNRSVQ-ADEEHPYSAHPTNSYQRTKVAAERLVLEANS------AKMATVSVRPAHIVGdplE 459
                 *********************************9..888888.*******************************......89*************5444 PP

   3Beta_HSD 185 gdkllvpllkqlaklglalfk..igdeevlsdrvYvgNvawahilAaralqdp.kkkssvagqayfisd 250
                  d  ++  ++ +   +l+l +  +  +++++++v v+N a  h+lAa + +   ++  svag+++  +d
  KOO21046.1 460 DDLYFLSGVQACFSEELSLPSldVSGKSAKMSMVHVENCALLHVLAAAKCRIGaRPVRSVAGRKFNATD 528
                 56667888889988888876522688999*****************98876540347778888877665 PP

>> Epimerase  NAD dependent epimerase/dehydratase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   95.5   0.0   2.1e-30   3.4e-27       2     231 ..     271     511 ..     270     525 .. 0.88

  Alignments for each domain:
  == domain 1  score: 95.5 bits;  conditional E-value: 2.1e-30
                 EEETTTSHHHHHHHHHHHHCT.SE.EEEEES-STTTTCHHCHHC...........EEEE--TT-HHHHHHHHHHHT-SEEEE--S---HHHHHHSHHHH CS
   Epimerase   2 lVtGatGfiGsalvkallekg.ye.vigldrlssasntarledl...........elveldltdrsalerlfkeeqpdavihlAavggvaassedpadf 87 
                 +VtG+ Gf+G+++v+ l   + ++ v+++d +  +  +++   +           e++++ +td  al++lf + +p++v+h A   + ++ + ++ ++
  KOO21046.1 271 VVTGGCGFLGAHIVRLLCLLDgVTsVHVIDVQLPQPDSGLPMAAngckwrgggkvEVHQMSITDTPALDELFTRIRPTTVFHTASLIDLRDDAASQDAL 369
                 7**************9976665666*******8888888877779****************************************************** PP

                 HHHHTHHHHHHHHHHHHHTCTEEEEEEE.GGGGTSCSSSSBSTCSTTS--..--SSHHHHHHHHHHHHHHHHHHHHT-EEEEEEESEEESTT.S-TTS. CS
   Epimerase  88 ieknlqgtlnlleaarkagvkrllflsS.sevYGkdaeqpkeettltgpl..kpnspYaaaKlageklveayaaqyglnaiilrlfnlyGpr.ngege. 181
                  + n+ gt+ ll  a ++g+ r+++ sS  ++Y  + +++ +e+    p+  +p++ Y ++K+a+e+lv +++ +  + ++++r+ +++G   + +   
  KOO21046.1 370 EHVNVDGTRALLALAAQHGATRFVYTSSiECTYAYNRSVQADEEH---PYsaHPTNSYQRTKVAAERLVLEANSAK-MATVSVRPAHIVGDPlEDDLYf 464
                 ****************************99****99996466666...7888*******************98888.9************996444444 PP

                 TTSHHHHHHHHHHTTSSSEEEETTST-EEEEEEHHHHHHHHHHHHHHHTT CS
   Epimerase 182 vsrvipalirkilegkqevtllgdgtalRdflyveDvaeaillvlehvda 231
                  s+v +++ + + +   ++ + +  +a++  ++ve +a +++l++++++ 
  KOO21046.1 465 LSGVQACFSEELSLP--SLDV-SGKSAKMSMVHVENCALLHVLAAAKCRI 511
                 777777777776653..3555.45899****************9998665 PP

>> GDP_Man_Dehyd  GDP-mannose 4,6 dehydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.1   0.0   7.1e-20   1.2e-16       2     169 ..     272     440 ..     271     451 .. 0.86

  Alignments for each domain:
  == domain 1  score: 61.1 bits;  conditional E-value: 7.1e-20
                    EETTTSHHHHHHHHHH..HHCT-CCEEEEEEESS-TTHHHHHCTTT...TTGCCEEEEE--TT-HHHHHHHHHHHT-SEEEE--S---HHHHTTSH CS
  GDP_Man_Dehyd   2 iTGiaGfiGsylaelL..lekgyevhgivrrsssfntgriehlakdpkeeleenlklhkgDltDssslerllaevqpdevynLAAqshVdvsfekP 95 
                    +TG+ Gf G+++++lL  l+    vh+i+ +  + + g   +    +  +  +++++h++ +tD+ +l++l+ +++p++v++ A     +    + 
     KOO21046.1 272 VTGGCGFLGAHIVRLLclLDGVTSVHVIDVQLPQPDSGLPMAANGCK-WRGGGKVEVHQMSITDTPALDELFTRIRPTTVFHTASLIDLRDDAASQ 366
                    9************9873256668899998887777766665555444.45678******************************************* PP

                    HHHHHHHTHHHHHHHHHHHHCT..TTSEEEEEEEGGG.G-S-SSSSB-TTS--..---SHHHHHHHHHHHHHHHHHH CS
  GDP_Man_Dehyd  96 eytaevnvlGtlrLLeairalglekkvrfyqaStsEv.YGkvqevpqtEttpf..yPrsPYaaaKlyadwivvnyre 169
                    ++   vnv Gt  LL ++ ++g    +rf+ +S+ E+ Y   ++v  +E++p+  +P++ Y  +K++a+ +v + + 
     KOO21046.1 367 DALEHVNVDGTRALLALAAQHGA---TRFVYTSSIECtYAYNRSVQADEEHPYsaHPTNSYQRTKVAAERLVLEANS 440
                    ********************995...8*******9954999999999*****9667*************99987655 PP

>> NAD_binding_4  Male sterility protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.5   0.5    0.0024         4       1      16 [.     272     287 ..     272     299 .. 0.80
   2 !   48.8   0.0   3.1e-16   5.1e-13      89     253 ..     348     498 ..     334     501 .. 0.75

  Alignments for each domain:
  == domain 1  score: 6.5 bits;  conditional E-value: 0.0024
                    EE-TTSHHHHHHHHHH CS
  NAD_binding_4   1 lTGaTGFLGkvLlekL 16 
                    +TG+ GFLG+++++ L
     KOO21046.1 272 VTGGCGFLGAHIVRLL 287
                    7***********9865 PP

  == domain 2  score: 48.8 bits;  conditional E-value: 3.1e-16
                    -EEEE--SS-S.ST...TSSEEHHHHHHHHHHHHHHHTSSS--.-EEEEEE.GGGTTS-TTT--SSS-H......HHH--EEEETTTCCCHHHHHH CS
  NAD_binding_4  89 dviihsaAtvnfde...pykellrvNveGtrevlelakklkklkvllhvST.ayvngeregeveekvyeegekeekldederaklkglpntYeqsK 180
                    + ++h a  +++ +   + + l  vNv+Gtr +l la++  ++  +++ S+  + + +++  v               ++e+  ++  +n Y+++K
     KOO21046.1 348 TTVFHTASLIDLRDdaaSQDALEHVNVDGTRALLALAAQHGAT-RFVYTSSiECTYAYNR-SV-------------QADEEHPYSAHPTNSYQRTK 428
                    579********9983334456999**************99999.9999999655555555.45.............678899999999******** PP

                    HHHHHHHHHHHHHH---EEEEEE-EEE--SSST---TTSHHHHHHHHHHH.H-EEES-S.B---TT--EEEHHHH CS
  NAD_binding_4 181 alaEklvrearrrsglpvvivRpsiitgesktGwingsdlgirgllglia.kgvlpeil.gdkeavldlvpvDyv 253
                    ++aE+lv ea++  ++ +v vRp  i+g++     +     ++g+ +++  +  lp++    k+a++ +v v+ +
     KOO21046.1 429 VAAERLVLEANSA-KMATVSVRPAHIVGDPLE---DDLY-FLSGVQACFSeELSLPSLDvSGKSAKMSMVHVENC 498
                    ***********77.999999********9987...4444.44455555441333443320233444666666655 PP

>> Polyketide_cyc2  Polyketide cyclase / dehydrase and lipid transport
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.1   0.6   1.5e-14   2.4e-11       8     120 ..     105     217 ..     103     239 .. 0.77

  Alignments for each domain:
  == domain 1  score: 44.1 bits;  conditional E-value: 1.5e-14
                      EEESS-HHHHHHHHTTTTGGGGT-TTEEEEECSE.STSSSTTTEEEEECCCS.SE..EEEEEEEEETTTTEEEEEEE.SSS-TSEEEEEEEEEC CS
  Polyketide_cyc2   8 vviaappekVwalvsdfenwprWhpevarveleg.gggpargvegtvrvggr.gt..vreelvevdpegrllsyrivkpvpvanyvatwtvtpd 97 
                      vviaappe Vw+++ dfe + +W p+ ++v++++ +gg+ + v  tv +g + gt  ++e++  vd+++ +l+y i+  ++ a  +a w v  +
       KOO21046.1 105 VVIAAPPEYVWRVLLDFERYKEWNPFHRDVRVVDqPGGT-VAVSLTVDMGELlGTlvSEETVYYVDEKRYILAYGIG-RKGPACLRAVWLVPTA 196
                      89****************************999856666.444589999998*444488999999988999999995.6777778999999999 PP

                      CETEEEE.EEEEEEEE--TT--HH CS
  Polyketide_cyc2  98 gggtrvt.wtgefdagplggpfek 120
                       ggt +  w+    +g+++++++ 
       KOO21046.1 197 NGGTIFNsWDT---IGGVPALLSR 217
                      99998765766...4445555444 PP

>> RmlD_sub_bind  RmlD substrate binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.3   0.0   4.1e-12   6.6e-09       4     142 ..     271     441 ..     269     459 .. 0.76

  Alignments for each domain:
  == domain 1  score: 35.3 bits;  conditional E-value: 4.1e-12
                    EEESTTSHHHHHHHHHCTT.TSE.EEEEE-TT..........................T--TTSHHHHHHHHHHH--SEEEE------HHHHHHSH CS
  RmlD_sub_bind   4 lvtGanGqlGseLakqlae.egl.evlaltre..........................eldltdaeavaellkeakpdvvvnaAAytavDkaEsee 71 
                    +vtG+ G lG +++++l   +g+ +v+ ++ +                          ++ +td  a++el+  ++p  v ++A   +       +
     KOO21046.1 271 VVTGGCGFLGAHIVRLLCLlDGVtSVHVIDVQlpqpdsglpmaangckwrgggkvevhQMSITDTPALDELFTRIRPTTVFHTASLIDLRDDAASQ 366
                    6788888888888887665233213344455577888888888888888888888888****************************9986666667 PP

                    HHHHHHHTHHHHHHHHHHHHCT-E.EEEEEE...GGGS-S-TTS-B-TTS----SSHHHHHHHHHHHHHHHH-SS CS
  RmlD_sub_bind  72 eaayavnaeavealAeaaaavgal.LihvSt...DyVFdGekkrpYeeddetsPlnvYGrtKlaGEqavlaagkk 142
                    +a ++vn+++++al ++aa++ga+ +++ S+    y ++ + +   e     +P n Y rtK+a E+ vl+a+  
     KOO21046.1 367 DALEHVNVDGTRALLALAAQHGATrFVYTSSiecTYAYNRSVQADEEHPYSAHPTNSYQRTKVAAERLVLEANSA 441
                    88899********9999999987549***984334666555444444445679*****************96653 PP

>> Polyketide_cyc  Polyketide cyclase / dehydrase and lipid transport
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.8   0.1   8.3e-11   1.4e-07       1      54 [.     107     160 ..     107     175 .. 0.81

  Alignments for each domain:
  == domain 1  score: 31.8 bits;  conditional E-value: 8.3e-11
                     ESS-HHHHHHHHTTTGGCCSCCCCEEEEEE.SSSEE...E.EEECSTTSSCEEEE CS
  Polyketide_cyc   1 vpapadqvyalvadvesypeflphcssvevleeaesglsa.dlevgfggltesft 54 
                     ++ap++ v++++ d+e+y+e++p+ ++v+v+++ + g+ a +l+v  g+l  +++
      KOO21046.1 107 IAAPPEYVWRVLLDFERYKEWNPFHRDVRVVDQPG-GTVAvSLTVDMGELLGTLV 160
                     78*********************************.5555566666666555554 PP

>> NAD_binding_10  NAD(P)H-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.3   0.0   1.5e-08   2.5e-05      39     150 ..     323     457 ..     316     475 .. 0.75

  Alignments for each domain:
  == domain 1  score: 24.3 bits;  conditional E-value: 1.5e-08
                     TTCEEEE--TT-CCHHHHHHTT-S..EEEES-.........--TCC....HHHHHHHHHHHHHHCT--EEEEEEETTTTSGCGCH.....HHHHH CS
  NAD_binding_10  39 eglevvegdvtdvedlaealkgad..aVvsal.........ggggk....deegaknivdaakeagvkRfvlvsaigvgdevpge.....fgewn 113
                      ++ev ++++td+ +l e ++ +   +V+ ++         ++++     + +g++++++ a ++g  Rfv+ s+i ++   +++      +++ 
      KOO21046.1 323 GKVEVHQMSITDTPALDELFTRIRptTVFHTAslidlrddaASQDAlehvNVDGTRALLALAAQHGATRFVYTSSIECTYAYNRSvqadeEHPYS 417
                     6899*****************997658999998888776643333344444444***********************986544440000144455 PP

                     HHCCHHHHHHHHHHHHHH.HH..SSSEEEEEEE-CEE-ST CS
  NAD_binding_10 114 kellkaylaakraaeell.ra..sgldwTivrpggLtdep 150
                      +  ++y + k aae+l+ +a   ++  + vrp+++  +p
      KOO21046.1 418 AHPTNSYQRTKVAAERLVlEAnsAKMATVSVRPAHIVGDP 457
                     567789999*******96344545899999***9998776 PP

>> Polysacc_synt_2  Polysaccharide biosynthesis protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.8   0.0   1.1e-07   0.00018       2     128 ..     271     397 ..     270     455 .. 0.71

  Alignments for each domain:
  == domain 1  score: 20.8 bits;  conditional E-value: 1.1e-07
                      EEETTTSHHHHHHHHHHHHH.B-SEEEEEES-HHHHHH.HHHH......-TTEEEE....E--TT-HHHHHHHTT..T-SEEEE------HHHH CS
  Polysacc_synt_2   2 lvtGagGsiGselvrqilkk.kpkkiillerdElklye.iekeleeelkkkklkveivpvigdvrdkerlekaleelkvdvvfhaAAlKhVPlv 93 
                      +vtG+ G +G ++vr ++    ++++ +++ +  + ++ + +   ++  k +   ++ +   +++d+  l+++++++++ +vfh+A l  +   
       KOO21046.1 271 VVTGGCGFLGAHIVRLLCLLdGVTSVHVIDVQLPQPDSgLPMA--ANGCKWRGGGKVEVHQMSITDTPALDELFTRIRPTTVFHTASLIDLRDD 362
                      6999999999999998776658999999998765544312222..222223333444456889************************9877654 PP

                      HHSHHHHHHHHHHHHHHHHHHHHHTT-SEEEEEEE CS
  Polysacc_synt_2  94 eenpleaiktNvlgtenvieaaieagvkkvvliSt 128
                              + Nv gt+ ++  a ++g +++v+ S+
       KOO21046.1 363 AASQDALEHVNVDGTRALLALAAQHGATRFVYTSS 397
                      4445555568**********************997 PP

>> KR  KR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.2   0.0   5.6e-07   0.00091       2     139 ..     269     400 ..     268     412 .. 0.79

  Alignments for each domain:
  == domain 1  score: 19.2 bits;  conditional E-value: 5.6e-07
                 EEEEETTTSHHHHHHHHHHH.HHHS-EEEEE-SS..--HHHH..HHHHHHHHT.T-EEEE----TT-HHHHHHHHHHHHHHSS---EEEE--------- CS
          KR   2 tylitGGlGgLGlelarwla.ekgarhlvllsRsaaadedsk..aliaeleal.gaevevvaaDvsdkdavealleeikaeeppikGvihaAgvlrdkl 96 
                 + ++tGG+G LG +++r l+  +g +++ ++  +  +++ds      + ++ + g +vev ++ ++d  a+ +l+++i+ ++     v+h+A +++ + 
  KOO21046.1 269 VCVVTGGCGFLGAHIVRLLClLDGVTSVHVIDVQ-LPQPDSGlpMAANGCKWRgGGKVEVHQMSITDTPALDELFTRIRPTT-----VFHTASLIDLRD 361
                 679****************845999999999888.344444411455555555566**********************9655.....*****9987554 PP

                 TTT--HHHHHHHHTTTTHHHHHHHHHTTTS--SEEEEEEEHHH CS
          KR  97 leemtaedleqvlapKvkGawnLhelledesldffvlfSSiag 139
                  +  ++++le+v    v+G++ L  l +++    fv++SSi  
  KOO21046.1 362 -DAASQDALEHV---NVDGTRALLALAAQHGATRFVYTSSIEC 400
                 .44455555554...69***********************965 PP

>> AHSA1  Activator of Hsp90 ATPase homolog 1-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.7   0.0   1.6e-05     0.026       1      39 [.     108     148 ..     108     184 .. 0.75

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 1.6e-05
                 SS-HHHHHHHHH-HHHHHHH..EEEEEEEE--STTEEEEE.E CS
       AHSA1   1 dapperVfraltdpellkrW..ftlteaemdlrpGgkfrl.r 39 
                 +appe V+r+l+d e+ k W  f++++  +d +pGg++ +  
  KOO21046.1 108 AAPPEYVWRVLLDFERYKEWnpFHRDVRVVD-QPGGTVAVsL 148
                 59******************75555555555.6999988743 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (677 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       469  (0.0261587); expected 358.6 (0.02)
Passed bias filter:                      400  (0.0223102); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.62u 0.30s 00:00:00.92 Elapsed: 00:00:00.46
# Mc/sec: 4451.04
//
Query:       KOO21047.1  [L=380]
Description: methyltransferase family protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    6.5e-07   29.5   0.0    9.1e-07   29.0   0.0    1.3  1  Methyltransf_21  Methyltransferase FkbM domain


Domain annotation for each model (and alignments):
>> Methyltransf_21  Methyltransferase FkbM domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.0   0.0   5.1e-11   9.1e-07      20     156 ..      95     235 ..      65     276 .. 0.72

  Alignments for each domain:
  == domain 1  score: 29.0 bits;  conditional E-value: 5.1e-11
  Methyltransf_21  20 cggggev..laiEPvpns..lpkfeklranlltlavgndvglyelivegksg...gkyfpfavgdtngfstssvlg..gedaryievpvvtlds 104
                      +g +++v  +a+E+ p++  + k e lr+n++++  ++     +++  g+++   +  f +  g+tn+++  +  +  +   +  evpv  ld+
       KOO21047.1  95 AGFKDQVdvHAFEARPDKaeALKVEALRRNSTSAYASKR---LHVHAMGAADvagQLRFANCGGSTNWMIVDRGATppRGCVVKYEVPVSSLDD 185
                      4555666669*********99999999999885554433...3333333333355556777778888888887777877888999********* PP

  Methyltransf_21 105 fleei..kksridllkiDvEGaElevLeGaqkglkrcqpnlivvEvhkfk.efet 156
                      + +e+  k +r  ++k+D+EG+E  v +G   +l r      +vE  +f+ ++ +
       KOO21047.1 186 LVREGmlKGRRLLYIKVDIEGSEVAVAKGMALLLAR-----QMVELMSFEyAKNW 235
                      *66666***********************9999988.....45777777733333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (380 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       367  (0.0204696); expected 358.6 (0.02)
Passed bias filter:                      344  (0.0191868); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.26s 00:00:00.70 Elapsed: 00:00:00.40
# Mc/sec: 2832.56
//
Query:       KOO21048.1  [L=310]
Description: fkbp-type peptidyl-prolyl cis-trans isomerase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.6e-17   61.9   0.0    1.3e-16   60.7   0.0    1.6  1  FKBP_C    FKBP-type peptidyl-prolyl cis-trans isomerase
    3.2e-08   34.4   0.5    9.2e-08   33.0   0.0    1.9  2  FKBP_N    Domain amino terminal to FKBP-type peptidyl-prolyl 


Domain annotation for each model (and alignments):
>> FKBP_C  FKBP-type peptidyl-prolyl cis-trans isomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.7   0.0   1.4e-20   1.3e-16       3      93 ..      58     152 ..      56     153 .. 0.89

  Alignments for each domain:
  == domain 1  score: 60.7 bits;  conditional E-value: 1.4e-20
                 CBB-TTCEEEEEEEEEET.T......SSEEEEHCCHTSEEEEETTSSSSCHHHHHHHTTSBTT-EEEEEEEGGGTTTTTTBCTTTB.TTSEEEEEEEE CS
      FKBP_C   3 eeakegdtVtvhykgkle.d......gkvfdssrsrakplefkvGsgqvikGfeealegmkvGekrtltippelaYgekglaggvippnatLvFeveL 93 
                 ++++ g+ +++hy+g+ + +      gk+fdss++r++p++f  +   vi G+ ea++ m  G+k++l ip+elaYg+ g+ gg i+++  LvF+  +
  KOO21048.1  58 KHPNVGTDCSCHYEGRTAqEwskdpkGKKFDSSFDRGSPANFAPN--GVIAGWTEAMQLMVEGDKWELYIPSELAYGDSGQ-GGDIKGGDVLVFTLHM 152
                 668889999********433555577****************988..7*********************************.999*********9765 PP

>> FKBP_N  Domain amino terminal to FKBP-type peptidyl-prolyl isomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.0   0.0     1e-11   9.2e-08      69      97 .]      22      50 ..      13      50 .. 0.90
   2 ?   -2.2   0.1      0.92   8.3e+03      31      49 ..     217     235 ..     212     260 .. 0.51

  Alignments for each domain:
  == domain 1  score: 33.0 bits;  conditional E-value: 1e-11
      FKBP_N 69 nkaegeaFlaenkkkeGVkttesGLqYkV 97
                + a g++Flaen +k+GV+t+ sGLqYkV
  KOO21048.1 22 TNAFGKKFLAENGQKPGVVTLRSGLQYKV 50
                56789***********************9 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 0.92
      FKBP_N  31 Glkdalkgkskltdeeiqe 49 
                 G+k+a  +++k +d ++ +
  KOO21048.1 217 GFKAAARQSAKAADGSMYA 235
                 5555554444432223322 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (310 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       420  (0.0234257); expected 358.6 (0.02)
Passed bias filter:                      283  (0.0157845); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.45u 0.24s 00:00:00.69 Elapsed: 00:00:00.51
# Mc/sec: 1821.00
//
Query:       KOO21049.1  [L=674]
Description: ca2 :cation antiporter family [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    9.8e-10   38.8   0.2    2.3e-09   37.6   0.2    1.6  1  EF-hand_7  EF-hand domain pair
    4.4e-09   36.5  32.3    2.3e-05   24.4  15.8    3.0  2  Na_Ca_ex   Sodium/calcium exchanger protein
    2.6e-08   33.2   1.3    0.00017   21.2   0.2    3.0  3  EF-hand_6  EF-hand domain
    2.7e-08   32.8   0.9    0.00047   19.5   0.2    2.7  2  EF-hand_1  EF hand
    4.3e-05   23.3   0.4    0.00012   21.8   0.2    1.9  2  EF-hand_8  EF-hand domain pair
    7.7e-05   22.0   0.0       0.53    9.9   0.0    2.5  2  EF-hand_5  EF hand
  ------ inclusion threshold ------
       0.12   12.3   0.1       0.39   10.7   0.1    1.8  1  CcmE       CcmE


Domain annotation for each model (and alignments):
>> EF-hand_7  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.6   0.2   8.9e-13   2.3e-09       7      69 ..     323     380 ..     317     382 .. 0.89

  Alignments for each domain:
  == domain 1  score: 37.6 bits;  conditional E-value: 8.9e-13
   EF-hand_7   7 aFkelDtdgdgyldkeellrllrkifqgagegsklsdeelellfkefDtdkdGvisfdEFlkl 69 
                  F+++Dtdg+g +d++el+ ll+        + ++ ++e   ++k +D + dG++ +dE+l +
  KOO21049.1 323 YFDKYDTDGTGAIDEAELKYLLKD-----LGARDIGKKEAAMWMKRLDRNEDGQLGRDELLDA 380
                 5**********************9.....677777788999******************9977 PP

>> Na_Ca_ex  Sodium/calcium exchanger protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   8.5     2e-06    0.0052       5      92 ..      53     156 ..      49     256 .. 0.73
   2 !   24.4  15.8     9e-09   2.3e-05       3     149 ..     500     665 ..     498     667 .. 0.82

  Alignments for each domain:
  == domain 1  score: 16.8 bits;  conditional E-value: 2e-06
                 HHHHHHHHHHHHHHHHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHHHHHHHHHHHT....TTHHHHHHHHHHHHHHHHHTHHHHHHHHHH........ CS
    Na_Ca_ex   5 lfilslllisvladflvssaeeiakslgisgsvlGltllAlgnslpElissiiaalt....gevdlaignvlGsnifnlllviGlialigs........ 91 
                 l+++   +++ ++++l++  e +   +     v+G ++l++ + +p+ ++ +++ l+     + ++++g++ Gs i+ l++ +Gl++l gs        
  KOO21049.1  53 LLLMYGYILMYASNMLSEGSELLL-LVPSLAGVVGSVVLPILGAVPDGAIMLFSGLGpgaqEQLQVGVGTLAGSTIMLLTIPWGLCILGGSvgiadgva 150
                 455555666699999999999999.45555669***********************7654355*************************99977776665 PP

                 .....B CS
    Na_Ca_ex  92 .....l 92 
                       
  KOO21049.1 151 sytvkK 156
                 554330 PP

  == domain 2  score: 24.4 bits;  conditional E-value: 9e-09
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHHHHHHHHHHHT..........................TT.HHHHHHHHHHH CS
    Na_Ca_ex   3 fvlfilslllisvladflvssaeeiakslgisgsvlGltllAlgnslpElissiiaalt..........................ge.vdlaignvlGs 74 
                 f ++ ++++l+ +++d +v+ ++++++ + +++  ++ +l +l++++ Eli+s++ al+                          ++ +++a++++ G+
  KOO21049.1 500 FSMMGMGTALVLIFSDPMVEVMSNVGERVSVPPFYISFVLAPLASNASELIASVTYALSttrslvglpnssallasliryarkktQKtITVALAALEGA 598
                 567889****************************************************555556666666666666666666554226*********** PP

                 HHHHHHTHHHHHHHHHHBTTSSCECCHHHHHHHHHHHHHHHHHHHTCHHHHHHTEEHHHHHHHHHHHHHHHHHHH CS
    Na_Ca_ex  75 nifnlllviGlialigslkvdseslkldlgllllvallllllvlllllplfvpgrltvleglvllllYalylvls 149
                 +++n ++++++ +++  ++ +++ +k++ + l ++++ ll+ +++ +     ++++t  ++ + l+l+ l +v+ 
  KOO21049.1 599 ACMNNTFCLAIFMCL--VYFKNLAWKFSAETLAILLVELLVGMVA-M-----QKVMTTTTAYMVLALFPLSIVFI 665
                 ***********9999..6677777788886655555555444444.3.....49******************996 PP

>> EF-hand_6  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.0       1.8   4.6e+03      15      24 ..     160     169 ..     158     170 .. 0.86
   2 !   21.2   0.2   6.7e-08   0.00017       6      31 .]     324     348 ..     323     349 .. 0.94
   3 !    9.1   0.1   0.00052       1.3       7      25 ..     362     380 ..     360     387 .. 0.89

  Alignments for each domain:
  == domain 1  score: -1.9 bits;  conditional E-value: 1.8
   EF-hand_6  15 GkidaeElrk 24 
                 G+++aeE+r+
  KOO21049.1 160 GSLTAEEVRA 169
                 99*****986 PP

  == domain 2  score: 21.2 bits;  conditional E-value: 6.7e-08
   EF-hand_6   6 FklfDkdgdGkidaeElrkalrkalg 31 
                 F+++D+dg+G id +El+ +l+ +lg
  KOO21049.1 324 FDKYDTDGTGAIDEAELKYLLK-DLG 348
                 *********************9.776 PP

  == domain 3  score: 9.1 bits;  conditional E-value: 0.00052
   EF-hand_6   7 klfDkdgdGkidaeElrka 25 
                 k +D++ dG++ ++El +a
  KOO21049.1 362 KRLDRNEDGQLGRDELLDA 380
                 679*************997 PP

>> EF-hand_1  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.5   0.2   1.8e-07   0.00047       6      28 ..     324     346 ..     323     347 .. 0.94
   2 !   11.3   0.0   7.9e-05       0.2       5      26 ..     360     381 ..     356     384 .. 0.88

  Alignments for each domain:
  == domain 1  score: 19.5 bits;  conditional E-value: 1.8e-07
                 HHHHTTTSSSEEEHHHHHHHHHH CS
   EF-hand_1   6 FrefDkDgdGkIdfeEfkellkk 28 
                 F+++D+Dg+G Id  E+k llk+
  KOO21049.1 324 FDKYDTDGTGAIDEAELKYLLKD 346
                 99******************997 PP

  == domain 2  score: 11.3 bits;  conditional E-value: 7.9e-05
                 HHHHHTTTSSSEEEHHHHHHHH CS
   EF-hand_1   5 iFrefDkDgdGkIdfeEfkell 26 
                  ++ +D++ dG++ ++E+++++
  KOO21049.1 360 WMKRLDRNEDGQLGRDELLDAV 381
                 5899**************9986 PP

>> EF-hand_8  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   0.0       3.5     9e+03      21      29 ..     158     168 ..     153     169 .. 0.72
   2 !   21.8   0.2   4.8e-08   0.00012       2      52 ..     332     381 ..     324     383 .. 0.94

  Alignments for each domain:
  == domain 1  score: -3.4 bits;  conditional E-value: 3.5
   EF-hand_8  21 k..glseeevd 29 
                 k  +l++eev+
  KOO21049.1 158 KhgSLTAEEVR 168
                 45799999997 PP

  == domain 2  score: 21.8 bits;  conditional E-value: 4.8e-08
   EF-hand_8   2 kgkItreelrrilrilglkkglseeevdilfrefDtdgdGkisfeEFcvll 52 
                 +g I+ +el+  l+ lg ++ ++++e+ + ++++D+++dG ++ +E ++ +
  KOO21049.1 332 TGAIDEAELKYLLKDLGARD-IGKKEAAMWMKRLDRNEDGQLGRDELLDAV 381
                 899********99999*997.*************************99865 PP

>> EF-hand_5  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.4   0.0   0.00029      0.76       4      22 ..     323     341 ..     321     344 .. 0.93
   2 !    9.9   0.0   0.00021      0.53       4      22 ..     360     378 ..     357     382 .. 0.88

  Alignments for each domain:
  == domain 1  score: 9.4 bits;  conditional E-value: 0.00029
                 HHHHH-SS-SSCE-HHHHH CS
   EF-hand_5   4 tFqaiDlNgDGkIskeELk 22 
                 +F++ D++g G I+  ELk
  KOO21049.1 323 YFDKYDTDGTGAIDEAELK 341
                 6****************97 PP

  == domain 2  score: 9.9 bits;  conditional E-value: 0.00021
                 HHHHH-SS-SSCE-HHHHH CS
   EF-hand_5   4 tFqaiDlNgDGkIskeELk 22 
                 + +++D N DG++ ++EL 
  KOO21049.1 360 WMKRLDRNEDGQLGRDELL 378
                 7899*************95 PP

>> CcmE  CcmE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.1   0.00015      0.39       6      60 ..     234     289 ..     230     304 .. 0.76

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00015
                 XXXXXXXXXXXXXXXXXXXXXXX.XSSSXXBXTTTTTS--S-TTSEEEEEEEE-TT CS
        CcmE   6 lklivllllvlaavvvlvlsalq.enlvyfltpsevlekkaeegrrlrvgGlVkeg 60 
                 ++l+ ll+++ + v++lv++  q +  v   +++e+++k+ ++grr  + GlV++ 
  KOO21049.1 234 WALYGLLVAIAGFVTYLVIMVGQsDDDVKQQKVEEAMKKELSAGRRTTILGLVQPL 289
                 5566666777777778876655505568899**********************984 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (674 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1045  (0.0582855); expected 358.6 (0.02)
Passed bias filter:                      590  (0.0329076); expected 358.6 (0.02)
Passed Vit filter:                        56  (0.00312343); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.66u 0.31s 00:00:00.97 Elapsed: 00:00:00.45
# Mc/sec: 4474.98
//
Query:       KOO21050.1  [L=122]
Description: sequestosome 1 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.4e-07   30.0   0.7    4.8e-07   29.5   0.7    1.2  1  ZZ        Zinc finger, ZZ type
  ------ inclusion threshold ------
      0.047   14.0   0.5      0.069   13.5   0.5    1.3  1  C1_2      C1 domain


Domain annotation for each model (and alignments):
>> ZZ  Zinc finger, ZZ type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.5   0.7   5.3e-11   4.8e-07       3      37 ..      69     102 ..      67     109 .. 0.88

  Alignments for each domain:
  == domain 1  score: 29.5 bits;  conditional E-value: 5.3e-11
                 S-EE-TTT-S..EESSEEEESSSSS-EE-HHHHHH CS
          ZZ   3 kkytCdgCseapligvRyhclrcsdYDLCqsCfst 37 
                   + CdgC   p++g R++cl  s +DLC  C  +
  KOO21050.1  69 LSVVCDGCEG-PVVGHRFQCLTRSHFDLCEACMWS 102
                 5688******.*********************865 PP

>> C1_2  C1 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.5   7.7e-06     0.069      18      47 .]      70     100 ..      60     100 .. 0.89

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 7.7e-06
        C1_2  18 sfnCsaCgrkidgffYsCse.CdfslhvrCa 47 
                 s  C++C+ ++ g ++ C +   f l++ C+
  KOO21050.1  70 SVVCDGCEGPVVGHRFQCLTrSHFDLCEACM 100
                 678*******99******88899*******5 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (122 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       438  (0.0244297); expected 358.6 (0.02)
Passed bias filter:                      281  (0.0156729); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.42u 0.21s 00:00:00.63 Elapsed: 00:00:00.41
# Mc/sec: 888.60
//
Query:       KOO21051.1  [L=663]
Description: hypothetical protein Ctob_001082 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.056   13.8   0.4        0.2   12.0   0.0    2.0  2  NAPRTase_N  Nicotinate phosphoribosyltransferase (NAPRTase) N


Domain annotation for each model (and alignments):
>> NAPRTase_N  Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.2      0.17   3.1e+03       3      15 ..     101     113 ..     100     121 .. 0.79
   2 ?   12.0   0.0   1.1e-05       0.2      87     124 ..     235     272 ..     223     273 .. 0.78

  Alignments for each domain:
  == domain 1  score: -1.5 bits;  conditional E-value: 0.17
  NAPRTase_N   3 tDlYkltmaqavf 15 
                 +D Ykl m+ + +
  KOO21051.1 101 NDYYKLVMSRVQY 113
                 7*******98765 PP

  == domain 2  score: 12.0 bits;  conditional E-value: 1.1e-05
  NAPRTase_N  87 sevaveeeevvfpgepeirveGpwieaillEtplLaiv 124
                 s+ a e   v ++g+  +  +Gpw++++++Etp+L+++
  KOO21051.1 235 STEACEVRVVEQHGQAVVLAQGPWFRVTFVETPVLQCM 272
                 5544544444668999999****************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (663 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       397  (0.0221429); expected 358.6 (0.02)
Passed bias filter:                      321  (0.017904); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.56u 0.25s 00:00:00.81 Elapsed: 00:00:00.42
# Mc/sec: 4794.15
//
Query:       KOO21052.1  [L=105]
Description: hypothetical protein Ctob_001087 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (105 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       511  (0.0285013); expected 358.6 (0.02)
Passed bias filter:                      273  (0.0152267); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.22s 00:00:00.59 Elapsed: 00:00:00.39
# Mc/sec: 804.42
//
Query:       KOO21053.1  [L=700]
Description: choline transporter-like protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    6.2e-59  199.8  37.6    6.2e-59  199.8  37.6    2.1  2  Choline_transpo  Plasma-membrane choline transporter


Domain annotation for each model (and alignments):
>> Choline_transpo  Plasma-membrane choline transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.7   1.9     0.013   2.4e+02      50     268 ..     225     251 ..     208     301 .. 0.66
   2 !  199.8  37.6   3.5e-63   6.2e-59       1     324 [.     313     631 ..     313     633 .. 0.90

  Alignments for each domain:
  == domain 1  score: 0.7 bits;  conditional E-value: 0.013
  Choline_transpo  50 lllllvsafwivvavalylassgestdkvnsgsesglaavefessskvkalllyllfgllWtleflralqqvtvagavasWYfskkkdlpskfp 143
                      ++ +++                                                                                        
       KOO21053.1 225 FIWAIF---------------------------------------------------------------------------------------- 230
                      333333........................................................................................ PP

  Choline_transpo 144 vlkslkraltyhlGSialgSlilaivqllrlileylekklkkkenavakcllcclkcclwclekflkflnrnayimvaiyGksFcesakdafel 237
                                                                                                                    
       KOO21053.1   - ----------------------------------------------------------------------------------------------   -
                      .............................................................................................. PP

  Choline_transpo 238 lkrnglrvavldsvvdfvlflgkllialltg 268
                                l+ + +++++l++++ +ll+g
       KOO21053.1 231 ----------LWFFAGVMVYLISIFLVLLMG 251
                      ..........344444444444444444444 PP

  == domain 2  score: 199.8 bits;  conditional E-value: 3.5e-63
  Choline_transpo   1 iillivavllllllivlrkrirlaiallkvaskaiksnpslllvplltllllllvsafwivvavalylassgestdkvnsgsesglaavefess 94 
                      ii++i+++ll+++l++ rk ++  + +l++++k++k+++ ++l p++  l+++++++++i+++  ++  ++ +++d         l    + s+
       KOO21053.1 313 IIFIIATILLVIFLVANRKALDRLVGILRETTKIFKAMFGIVLWPFWDILFQTVFFVYFIFIL--IF--TVNSPPD---------L----YPSE 389
                      79*************************************************************..65..3444443.........2....2334 PP

  Choline_transpo  95 skvkalllyllfgllWtleflralqqvtvagavasWYfs.kkkdlp..skfp.......vlkslkraltyhlGSialgSlilaivqllrliley 178
                      ++  +++++++f+++W+++f+ra++ +  ++a+++WY + ++ d++  +          ++++ + ++ +hlG++a+g+li+aivq++r++++y
       KOO21053.1 390 AENGVAVAFVVFVYYWISQFIRATIWTSMSAAICRWYITqNEPDQKrcC--GighglnkLFSGTCLIICKHLGTMAFGALIIAIVQTIRTVVMY 481
                      445789*********************************5333333431..2456666688********************************* PP

  Choline_transpo 179 lekklkkk..enavakcllcclkcclwclekflkflnrnayimvaiyGksFcesakdafellkrnglrvavldsvvdfvlflgkllialltgli 270
                      +++++++   +n v+k++++ ++ccl+cl+k ++ ++ + +++va++G++Fc+++ ++f ++ +n+++va+++ vv+++++l+ l+  ++++++
       KOO21053.1 482 IDQQTQQMqnQNLVLKVVMKGVQCCLACLQKTIEVITYYGFVFVAMQGQPFCKACYSTFVFVISNPAQVAINKVVVKILVILIGLSTPVISACA 575
                      *****999889999******************************************************************************** PP

  Choline_transpo 271 aylllkatltnpe..elnsplvpllvvfiiayliasiflsvyesavdtifvcfaeD 324
                      a+ +l+  + +p+  + ++ lv+++v+f+i+y++++ ++s+ye a+d+if+c   D
       KOO21053.1 576 AFAYLEWCSIDPFykDKYNNLVAVAVTFLISYIVTTGVVSIYECAIDSIFLCAFKD 631
                      999999776666699777777*******************************9988 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (700 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1306  (0.0728429); expected 358.6 (0.02)
Passed bias filter:                      422  (0.0235373); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.70u 0.27s 00:00:00.97 Elapsed: 00:00:00.43
# Mc/sec: 4846.28
//
Query:       KOO21054.1  [L=418]
Description: hypothetical protein Ctob_001081 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.086   13.0   0.9       0.24   11.6   0.9    1.7  1  DUF2590   Protein of unknown function (DUF2590)


Domain annotation for each model (and alignments):
>> DUF2590  Protein of unknown function (DUF2590)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.9   1.3e-05      0.24      34      83 ..     298     347 ..     284     354 .. 0.90

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 1.3e-05
     DUF2590  34 ailesgllveliaersptlradiltqlellvedDeRlvPGtvkveeesle 83 
                 a++e   lv+ +aer +++ ad   + +ll+++ eR+   t ++e+ ++ 
  KOO21054.1 298 AVREKEELVAQVAERHRREAADKARNATLLLQEQERILKSTEEIERRHAA 347
                 79999999************************************998765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (418 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      3203  (0.178649); expected 358.6 (0.02)
Passed bias filter:                      499  (0.027832); expected 358.6 (0.02)
Passed Vit filter:                       124  (0.00691617); expected 17.9 (0.001)
Passed Fwd filter:                        38  (0.00211947); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 1.25u 0.38s 00:00:01.63 Elapsed: 00:00:00.59
# Mc/sec: 2141.67
//
Query:       KOO21055.1  [L=105]
Description: chloroplast 50s ribosomal protein l12 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.7e-11   42.9   8.3    4.7e-11   42.9   8.3    2.0  2  Ribosomal_L12    Ribosomal protein L7/L12 C-terminal domain
    1.7e-08   34.1   1.8    1.7e-08   34.1   1.8    2.3  3  Ribosomal_L12_N  Ribosomal protein L7/L12 dimerisation domain
  ------ inclusion threshold ------
      0.099   12.5   0.0       0.12   12.3   0.0    1.1  1  DUF2222          Uncharacterised signal transduction histidin
        0.1   12.9   0.3       0.18   12.1   0.3    1.4  1  DUF4777          Domain of unknown function (DUF4777)


Domain annotation for each model (and alignments):
>> Ribosomal_L12  Ribosomal protein L7/L12 C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.0   0.4     0.029   1.3e+02      21      37 ..      45      61 ..      26      65 .. 0.65
   2 !   42.9   8.3     1e-14   4.7e-11      19      67 .]      58     105 .]      56     105 .] 0.93

  Alignments for each domain:
  == domain 1  score: 3.0 bits;  conditional E-value: 0.029
                   HHH---HHHHHHHHTTT CS
  Ribosomal_L12 21 eitglgLkeaKdlVeaa 37
                   +++ + L ea +lV a 
     KOO21055.1 45 KLKKMTLLEASELVKAI 61
                   33467999999999876 PP

  == domain 2  score: 42.9 bits;  conditional E-value: 1e-14
                    HHHHH---HHHHHHHHTTTTSTEEEEE-HHHHHHHHHHHHCTT-EEEEE CS
  Ribosomal_L12  19 VreitglgLkeaKdlVeaapkvvkegvskeeAeeikkkLeeaGAevelk 67 
                    V++i ++   eaKd Ve+ap+++keg+sk+++e++++kL+eaGA+v++k
     KOO21055.1  58 VKAI-EVTFDEAKDAVEKAPNKIKEGASKADCEAAAAKLKEAGAVVSIK 105
                    5555.78899*************************************98 PP

>> Ribosomal_L12_N  Ribosomal protein L7/L12 dimerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   1.0      0.46   2.1e+03      36      43 ..      10      20 ..       6      30 .. 0.57
   2 !   34.1   1.8   3.7e-12   1.7e-08       2      29 ..      39      66 ..      39      76 .. 0.95
   3 ?   -2.5   0.7      0.94   4.2e+03      43      44 ..      91      92 ..      82     100 .. 0.56

  Alignments for each domain:
  == domain 1  score: -1.5 bits;  conditional E-value: 0.46
                     HHHH.H...HH CS
  Ribosomal_L12_N 36 vavaaa...aa 43
                     va+a +   +a
       KOO21055.1 10 VAAASGfmsPA 20
                     44442222233 PP

  == domain 2  score: 34.1 bits;  conditional E-value: 3.7e-12
                     HHHHHHHHHTSBHHHHHHHHHHHHHHTT CS
  Ribosomal_L12_N  2 ieeiieaikeltvLElseLvkalEekFG 29
                     ++ei+e +k++t+LE+seLvka+E +F+
       KOO21055.1 39 VDEIMEKLKKMTLLEASELVKAIEVTFD 66
                     69**********************9996 PP

  == domain 3  score: -2.5 bits;  conditional E-value: 0.94
                     HH CS
  Ribosomal_L12_N 43 aa 44
                     aa
       KOO21055.1 91 AA 92
                     11 PP

>> DUF2222  Uncharacterised signal transduction histidine kinase domain (DUF2222)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   2.6e-05      0.12      25      64 ..      30      70 ..      27      97 .. 0.87

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 2.6e-05
     DUF2222 25 aseyglttknreslkrLisalhrknselvrsIai.Fdaenq 64
                as++ +++   e++++L ++++ + selv++I + Fd+++ 
  KOO21055.1 30 ASKVHMSAVVDEIMEKLKKMTLLEASELVKAIEVtFDEAKD 70
                899999999***********************987888765 PP

>> DUF4777  Domain of unknown function (DUF4777)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.3     4e-05      0.18      17      51 ..      34      68 ..      29      71 .. 0.91

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 4e-05
     DUF4777 17 nrPaTldEivervaerydlseeelkkvVkntLeaA 51
                + +a +dEi+e++ +++ l+ +el k +++t+++A
  KOO21055.1 34 HMSAVVDEIMEKLKKMTLLEASELVKAIEVTFDEA 68
                567889***************************99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (105 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1128  (0.0629148); expected 358.6 (0.02)
Passed bias filter:                      595  (0.0331865); expected 358.6 (0.02)
Passed Vit filter:                        61  (0.00340231); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.43u 0.25s 00:00:00.68 Elapsed: 00:00:00.43
# Mc/sec: 729.36
//
Query:       KOO21056.1  [L=2128]
Description: tenascin xb-like protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.6e-21   75.5   4.7    2.4e-05   24.8   0.1    6.0  5  RCC1           Regulator of chromosome condensation (RCC1) re
    3.8e-12   45.7  19.6     0.0011   18.8   2.5    5.9  5  RCC1_2         Regulator of chromosome condensation (RCC1) re
  ------ inclusion threshold ------
        2.1    8.8  96.8      0.044   14.2   8.9    7.3  7  EGF_2          EGF-like domain


Domain annotation for each model (and alignments):
>> RCC1  Regulator of chromosome condensation (RCC1) repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.0      0.38   2.3e+03       4      19 ..    1414    1429 ..    1413    1449 .. 0.86
   2 !   12.3   0.0   3.3e-05       0.2       1      50 []    1482    1548 ..    1482    1548 .. 0.70
   3 !   18.4   0.0   4.1e-07    0.0025       1      49 [.    1551    1604 ..    1551    1605 .. 0.79
   4 !   24.8   0.1   4.1e-09   2.4e-05       3      49 ..    1611    1666 ..    1609    1667 .. 0.68
   5 !   15.0   1.3   4.8e-06     0.028       1      16 [.    1670    1685 ..    1670    1696 .. 0.92

  Alignments for each domain:
  == domain 1  score: -0.7 bits;  conditional E-value: 0.38
                  EEEEE--GGGTTSSSS CS
        RCC1    4 VysWGrndyGqLGlgt 19  
                  V++ G  ++G LGl+ 
  KOO21056.1 1414 VFAAGHATDGALGLPA 1429
                  99***********965 PP

  == domain 2  score: 12.3 bits;  conditional E-value: 3.3e-05
                  TTEEEEEE--GGGTTSS...SS---E..........EE.EEE-GGGTTS...-EEEEEEETTEEEEE CS
        RCC1    1 dGrVysWGrndyGqLGl...gttesv..........lv.Ptkveglsgn...rvvkvacGddhtval 50  
                  dG+Vy+WG+   G  G    g+++++          lv P   +g ++    r++++a+G+ h ++l
  KOO21056.1 1482 DGSVYTWGSRIVGAAGErieGPRDRSpdifpgsrdhLVlPAPAPGAPAGsaiRAIAIAAGCAHALVL 1548
                  9*******9999999998885554442222222222224666666666699************9986 PP

  == domain 3  score: 18.4 bits;  conditional E-value: 4.1e-07
                  TTEEEEEE--GGGTTSSSS-..........--EEEEEE-GGGTTS-EEEEEEETTEEEE CS
        RCC1    1 dGrVysWGrndyGqLGlgtt..........esvlvPtkveglsgnrvvkvacGddhtva 49  
                  dGrV ++G +d+GqL   ++           ++l+P+ ++     r+ k+acG++h+++
  KOO21056.1 1551 DGRVCGFGADDEGQLAGAPSaanatlaafvTCHLLPSTLP-----RMRKIACGCSHSLL 1604
                  9**************9977755445565555558897773.....789*********97 PP

  == domain 4  score: 24.8 bits;  conditional E-value: 4.1e-09
                  EEEEEE--GGGTTSSSS---EEEEEE-...GGGTTS......-EEEEEEETTEEEE CS
        RCC1    3 rVysWGrndyGqLGlgttesvlvPtkv...eglsgn......rvvkvacGddhtva 49  
                   +y++G ++ GqLG++   s   P +     +l+++       +v va+G dh+va
  KOO21056.1 1611 ALYAFGASNAGQLGRPAGSSAFEPIQSyhpHWLPARgayanvSIVGVAAGRDHSVA 1666
                  79*************666444444444344222222334557*************9 PP

  == domain 5  score: 15.0 bits;  conditional E-value: 4.8e-06
                  TTEEEEEE--GGGTTS CS
        RCC1    1 dGrVysWGrndyGqLG 16  
                  +G V +WG+ndyGqLG
  KOO21056.1 1670 SGAVCTWGFNDYGQLG 1685
                  599************9 PP

>> RCC1_2  Regulator of chromosome condensation (RCC1) repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.1   0.0      0.14   8.6e+02      12      21 ..    1240    1249 ..    1240    1250 .. 0.93
   2 !   12.9   0.1   1.2e-05     0.074       7      25 ..    1472    1490 ..    1462    1492 .. 0.89
   3 !   13.7   0.4   6.9e-06     0.041       2      30 .]    1536    1564 ..    1535    1564 .. 0.95
   4 !    8.1   0.1   0.00038       2.3       3      30 .]    1594    1622 ..    1592    1622 .. 0.91
   5 !   18.8   2.5   1.8e-07    0.0011       2      30 .]    1655    1683 ..    1654    1683 .. 0.95

  Alignments for each domain:
  == domain 1  score: -0.1 bits;  conditional E-value: 0.14
      RCC1_2   12 caLtedGeVl 21  
                  c++t+dG+V+
  KOO21056.1 1240 CSITSDGRVR 1249
                  99******96 PP

  == domain 2  score: 12.9 bits;  conditional E-value: 1.2e-05
      RCC1_2    7 GdyHscaLtedGeVlcWGs 25  
                  G  +s++L+edG V++WGs
  KOO21056.1 1472 GKGFSMVLLEDGSVYTWGS 1490
                  5578**************7 PP

  == domain 3  score: 13.7 bits;  conditional E-value: 6.9e-06
      RCC1_2    2 ksvsaGdyHscaLtedGeVlcWGsNsdGQ 30  
                  ++++aG  H+++L++dG+V ++G ++ GQ
  KOO21056.1 1536 IAIAAGCAHALVLLSDGRVCGFGADDEGQ 1564
                  6899**********************999 PP

  == domain 4  score: 8.1 bits;  conditional E-value: 0.00038
      RCC1_2    3 svsaGdyHscaLt.edGeVlcWGsNsdGQ 30  
                  ++++G +Hs+ +  e+++++++G  + GQ
  KOO21056.1 1594 KIACGCSHSLLVAaESDALYAFGASNAGQ 1622
                  79*********99568*********9999 PP

  == domain 5  score: 18.8 bits;  conditional E-value: 1.8e-07
      RCC1_2    2 ksvsaGdyHscaLtedGeVlcWGsNsdGQ 30  
                  + v+aG++Hs+a +++G+V +WG N++GQ
  KOO21056.1 1655 VGVAAGRDHSVAWLASGAVCTWGFNDYGQ 1683
                  669*************************9 PP

>> EGF_2  EGF-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.0   1.0         3   1.8e+04       1      12 [.     629     635 ..     627     642 .. 0.44
   2 ?   -2.1   1.4      0.88   5.3e+03      23      32 .]    1778    1787 ..    1774    1787 .. 0.89
   3 ?    4.4   7.6    0.0083        50       5      32 .]    1804    1841 ..    1800    1841 .. 0.77
   4 ?    0.9  12.8       0.1   6.1e+02       7      32 .]    1852    1896 ..    1846    1896 .. 0.76
   5 ?   14.2   8.9   7.3e-06     0.044       5      27 ..    1906    1930 ..    1900    1931 .. 0.84
   6 ?   14.1  10.7   7.5e-06     0.045       5      32 .]    1954    1986 ..    1947    1986 .. 0.85
   7 ?   13.2   8.3   1.4e-05     0.085       1      32 []    1991    2030 ..    1991    2030 .. 0.79

  Alignments for each domain:
  == domain 1  score: -4.0 bits;  conditional E-value: 3
       EGF_2   1 CsasdeiCgghG 12 
                 C+as     ++G
  KOO21056.1 629 CRAS-----VNG 635
                 3332.....234 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 0.88
       EGF_2   23 CdsgyqGktC 32  
                  Cd g+ G++C
  KOO21056.1 1778 CDMGFRGPSC 1787
                  9********* PP

  == domain 3  score: 4.4 bits;  conditional E-value: 0.0083
       EGF_2    5 deiCgghGtC.vnqcG.........qCdCdsgyqGktC 32  
                  +++C ghG   ++ c           C C +g+qG +C
  KOO21056.1 1804 SSNCAGHGLGpDDGCYqrsgasgtfACACAPGWQGTSC 1841
                  46799999887655557777877767************ PP

  == domain 4  score: 0.9 bits;  conditional E-value: 0.1
       EGF_2    7 iCgg..hGtCvnqc.G..................qCdCdsgyqGktC 32  
                  +C+g  +G C   c                    qC+C++g+ G+tC
  KOO21056.1 1852 NCNGfsRGLCK--CrStvdgsdlgfacaganttaQCVCSDGHAGPTC 1896
                  57777777777..7447777788888888888889************ PP

  == domain 5  score: 14.2 bits;  conditional E-value: 7.3e-06
       EGF_2    5 deiCgghGtCvnqcG..qCdCdsgy 27  
                  +  CgghG+C++ +G  qC+Cd g+
  KOO21056.1 1906 GQRCGGHGVCRTMGGvpQCMCDGGW 1930
                  788********8888888******9 PP

  == domain 6  score: 14.1 bits;  conditional E-value: 7.5e-06
       EGF_2    5 deiCgghGtC.vnqcG....qCdCdsgyqGktC 32  
                  + +C+ +G+C  +++G     C C++g+ G++C
  KOO21056.1 1954 SGECSSNGVCnSAATGatgaTCICNAGFEGDDC 1986
                  568*******55566988877************ PP

  == domain 7  score: 13.2 bits;  conditional E-value: 1.4e-05
       EGF_2    1 Csas..deiCgghGtC.vnqcG.....qCdCdsgyqGktC 32  
                  C++      C ghG C  +++G     +C+Cd g++G  C
  KOO21056.1 1991 CPSIglAGPCTGHGLCrLSTEGgqripVCQCDYGWSGTAC 2030
                  555556668*******766666677666***********9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (2128 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       531  (0.0296168); expected 358.6 (0.02)
Passed bias filter:                      283  (0.0157845); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 1.03u 0.33s 00:00:01.36 Elapsed: 00:00:00.53
# Mc/sec: 12071.16
//
Query:       KOO21057.1  [L=280]
Description: yip1 domain containing protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.6e-38  131.1   0.0    5.8e-38  130.8   0.0    1.0  1  TIMELESS  Timeless protein


Domain annotation for each model (and alignments):
>> TIMELESS  Timeless protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  130.8   0.0   3.2e-42   5.8e-38       2     224 ..      41     273 ..      40     278 .. 0.89

  Alignments for each domain:
  == domain 1  score: 130.8 bits;  conditional E-value: 3.2e-42
    TIMELESS   2 YklgddclecLkdLkrwlrlDdddnrrdvaralaeakilqndLipiLiqweekkkklalaclrLlvaLT.wPlelleeee......etee....qtahy 89 
                 Y +g++c +c+ dL+r+lr+ dd  +    ra++++++lqn Lip+L    +++ kl + +l++ v LT  P +l +++       +  +      a +
  KOO21057.1  41 YLIGEECKDCISDLQRYLRR-DDPMKLAATRAVGSWRVLQNHLIPLLRVTADSDPKLCFEVLKVVVKLTlKPEDLGYKMVnhlkekK--QpdpsIGAYL 136
                 99******************.999999**********************9998999*************889999777768886441..2334355678 PP

    TIMELESS  90 tqlkkalleyKaailseekgkvlkalvrlllevlakdreerterdegiieliLtLiRNilaiedp...qekeksasskkeddilhskliealeesgvld 185
                  +l++++  yK+a++++   +++  +vrll+ +l++  +er+e+d   iel + L+ N+l   +p   +++ ++a++ ++++ +  +l+ a+e+++ l+
  KOO21057.1 137 DELRRYHRAYKSAFVRS---DAMGSVVRLLARPLSVREDERSEQDSLSIELLFALLLNLLYTAHPdepPPEPSRAADVQTRTEVLRSLLVAMEREHALE 232
                 9****************...****************************************8866522255666666666699999************** PP

    TIMELESS 186 llltlassigkef..eqeqfnllllEiiylllkgqdpeeLa 224
                 l l++ +++++     ++++nl+llEi+y++l   +p +L+
  KOO21057.1 233 LALYVLQQVEEPGalAYRALNLTLLEIVYYVLSAHTPTALY 273
                 *********9655888999******************9997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (280 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       355  (0.0198003); expected 358.6 (0.02)
Passed bias filter:                      321  (0.017904); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.24s 00:00:00.69 Elapsed: 00:00:00.42
# Mc/sec: 1982.52
//
Query:       KOO21058.1  [L=772]
Description: protein timeless-like protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    4.1e-15   56.0   0.2    4.1e-15   56.0   0.2    3.6  4  TIMELESS_C      Timeless protein C terminal region
  ------ inclusion threshold ------
      0.077   13.3   0.0       0.16   12.2   0.0    1.5  1  Myb_DNA-bind_6  Myb-like DNA-binding domain
       0.18   11.0   0.0       0.39    9.9   0.0    1.6  2  TIMELESS        Timeless protein


Domain annotation for each model (and alignments):
>> TIMELESS_C  Timeless protein C terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   0.4     0.094   5.6e+02     228     258 ..     286     318 ..     274     352 .. 0.53
   2 !   56.0   0.2   6.8e-19   4.1e-15       5      85 ..     378     460 ..     374     469 .. 0.89
   3 ?    0.5   0.1     0.043   2.6e+02      93     219 ..     587     636 ..     554     686 .. 0.64
   4 ?   -0.8   0.9      0.11   6.4e+02     514     565 ..     726     770 ..     693     771 .. 0.80

  Alignments for each domain:
  == domain 1  score: -0.6 bits;  conditional E-value: 0.094
                 .XXXXXXXXXXXXXXXXXXX..XXXXXXXXXXX CS
  TIMELESS_C 228 akkkrkkrkpkkdveeeged..dfaedpeeeee 258
                  kkk+ krk+k ++++ ge+  d+a  + e +e
  KOO21058.1 286 KKKKKAKRKKKASAAMPGEEgdDVALGLPEPDE 318
                 344444444444555554433333333222222 PP

  == domain 2  score: 56.0 bits;  conditional E-value: 6.8e-19
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX..XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
  TIMELESS_C   5 iaydlemaalLFqlsllrlFqrilsepkavaskeleelv..kqlvrkllkkaevnpklfvELLFsKntsearelesgYekaev 85 
                 +  +++++a+LFqls l +F +il+ p+a a +    l+  +++ r+++ +ae np++fvE L +K+ +e++ + + Y++ + 
  KOO21058.1 378 LVKKCKLEAMLFQLSTLTTFLKILESPAARAPQHADLLAtcRYVTRRFFTVAERNPAVFVEALVWKKAHECEDIVNAYQERKA 460
                 6789***********************99988666666666***********************************9998764 PP

  == domain 3  score: 0.5 bits;  conditional E-value: 0.043
                 XXXXXXXXXXXXXXXXXXXXX..XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.......XXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
  TIMELESS_C  93 evwseeeeaelreLylankdvkeedkdvvewilesLadaarereavikklkdlGladkakdiisvKSAqsrkakrrllltsdedlelkslyeeerdedd 191
                 ++                                                                            +ts+ed  l++ ye      d
  KOO21058.1 587 PA----------------------------------------------------------------------------WTSEEDATLRERYEALGA-MD 608
                 34............................................................................555555555555544433.34 PP

                 XXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
  TIMELESS_C 192 vLekllkeiagkrSkaqvvkkLlqlglv 219
                   ++++  + + rS+ +v  +  +lgl 
  KOO21058.1 609 GWHHIMAGFLAPRSALEVLRRATKLGLT 636
                 4455555555555555555555555554 PP

  == domain 4  score: -0.8 bits;  conditional E-value: 0.11
                 ..........XXXXXXXXXXXXXXXXXXX.................XXX.XX CS
  TIMELESS_C 514 rarekdeissdrdnaddgalprkkkdkreraeakvdlePakRRrLkvveddd 565
                 r      i+s ++ ++  ++++++  k++        +P+++Rr  v ++dd
  KOO21058.1 726 RPAAAAAIDSPENADPH-SSAAWQSAKSP------APAPMHKRRNVVNDSDD 770
                 55566678888887777.99********9......56799999988888887 PP

>> Myb_DNA-bind_6  Myb-like DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   2.7e-05      0.16       1      36 [.     589     627 ..     589     633 .. 0.83

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 2.7e-05
  Myb_DNA-bind_6   1 WteeEdeiLlklvekygn..dWknI.aealnrRtpkqcf 36 
                     Wt eEd +L++ +e+ g    W++I a  l+ R+++++ 
      KOO21058.1 589 WTSEEDATLRERYEALGAmdGWHHImAGFLAPRSALEVL 627
                     ****************96647****55555789999885 PP

>> TIMELESS  Timeless protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   0.0   6.6e-05      0.39     239     276 .]       3      39 ..       1      39 [. 0.86
   2 ?   -3.2   0.0      0.65   3.9e+03     177     195 ..     233     251 ..     182     299 .. 0.58

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 6.6e-05
    TIMELESS 239 rasdelskllekekakkkasikknastRHsrFggtlsv 276
                 r +  l+++l++++a++ a ++   ++RH++Fgg + v
  KOO21058.1   3 RPGGALAQMLASQRAENAALQS-ARPSRHANFGGAYRV 39 
                 5677899*********999995.45*********9976 PP

  == domain 2  score: -3.2 bits;  conditional E-value: 0.65
    TIMELESS 177 aleesgvldllltlassig 195
                  ++e +vl+ll  l ++ +
  KOO21058.1 233 IFYEGQVLELLRGLIENYE 251
                 4666666666666666554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (772 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       624  (0.0348039); expected 358.6 (0.02)
Passed bias filter:                      416  (0.0232026); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.63u 0.32s 00:00:00.95 Elapsed: 00:00:00.46
# Mc/sec: 5061.16
//
Query:       KOO21059.1  [L=767]
Description: Tankyrase-1 like protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    7.4e-18   64.4   0.1    1.4e-17   63.5   0.1    1.5  1  DnaJ           DnaJ domain
    1.1e-13   51.5   0.1    2.8e-13   50.3   0.1    1.6  1  Ank_2          Ankyrin repeats (3 copies)
    8.2e-13   48.3   0.8      1e-06   28.9   0.1    2.6  2  Ank_5          Ankyrin repeats (many copies)
    5.3e-12   46.0   0.1    3.2e-08   34.0   0.0    3.2  3  Ank_4          Ankyrin repeats (many copies)
    4.4e-11   42.7   1.7     0.0018   18.6   0.0    3.6  3  Ank            Ankyrin repeat
    1.7e-10   40.2   0.1    0.00023   21.4   0.0    3.4  3  Ank_3          Ankyrin repeat
    2.3e-10   39.8   4.5      0.014   15.5   0.1    4.2  3  TPR_2          Tetratricopeptide repeat
    2.5e-07   30.2   2.0      0.038   13.8   0.1    3.6  3  TPR_1          Tetratricopeptide repeat
    0.00042   20.5   0.7    0.00042   20.5   0.7    4.2  3  TPR_12         Tetratricopeptide repeat
     0.0017   18.4   0.1       0.77   10.1   0.0    3.0  2  TPR_8          Tetratricopeptide repeat
     0.0027   18.3   3.9     0.0027   18.3   3.9    6.6  4  TPR_16         Tetratricopeptide repeat
  ------ inclusion threshold ------
      0.066   13.2   1.8       0.14   12.2   0.3    2.2  2  HTH_37         Helix-turn-helix domain


Domain annotation for each model (and alignments):
>> DnaJ  DnaJ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.5   0.1   9.6e-21   1.4e-17       2      63 .]     588     653 ..     587     653 .. 0.88

  Alignments for each domain:
  == domain 1  score: 63.5 bits;  conditional E-value: 9.6e-21
                 HHHHHTSSTTG-HHHHHHHHHHHHHHHSTTTSCCHH....HHHHHHHHHHHHHHHHTSHHHHHHHH CS
        DnaJ   2 yYeiLgvskdasedeIkkaYrklalkyHPDknpkdp....eaeekFkeineAyevLsdpekRkqYD 63 
                 +Ye+Lgv+ +a++  Ik+aYr ++l++HPDk++k      +a+ +F+++++Aye+Lsd+  R++ D
  KOO21059.1 588 PYEVLGVPDTADAPAIKRAYRVQCLQWHPDKHQKTAeeraRASAMFQRVTRAYETLSDELARADLD 653
                 7*****************************99444333457888***************9999876 PP

>> Ank_2  Ankyrin repeats (3 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.3   0.1   1.9e-16   2.8e-13       8      81 ..     347     428 ..     340     430 .. 0.87

  Alignments for each domain:
  == domain 1  score: 50.3 bits;  conditional E-value: 1.9e-16
       Ank_2   8 gnlelvklLl.egadpn..k.ngktaLhyAakngnleivklLleh......adndgrtpLhyAarsghleivklLlekgadinl 81 
                 g   l++ Ll  ga +n  + +g+ta+h+A+++g+  i+ lL++h      +d  grtpLh+Aa  g+  +v+lLl +gad ++
  KOO21059.1 347 G--ALIEALLlRGAQVNavDeTGRTAIHWACERGQPLIAALLVQHhaslevVDARGRTPLHAAAARGSGTLVELLLRHGADETV 428
                 4..48899988**99998747*************988999999988998887899*********99**********99**9765 PP

>> Ank_5  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.9   0.1     7e-10     1e-06       1      54 [.     353     405 ..     353     405 .. 0.95
   2 !   26.8   0.1   3.2e-09   4.7e-06       1      52 [.     386     436 ..     386     440 .. 0.89

  Alignments for each domain:
  == domain 1  score: 28.9 bits;  conditional E-value: 7e-10
       Ank_5   1 LlehgpadvnrldgggntpLhvAakygaadvvrlLlargadlnltdsrGltald 54 
                 Ll +g a+vn+ d+ g t++h+A+++g + ++ lL+ ++a+l + d+rG+t+l+
  KOO21059.1 353 LLLRG-AQVNAVDETGRTAIHWACERGQPLIAALLVQHHASLEVVDARGRTPLH 405
                 56677.9*********************************************96 PP

  == domain 2  score: 26.8 bits;  conditional E-value: 3.2e-09
       Ank_5   1 LlehgpadvnrldgggntpLhvAakygaadvvrlLlargadlnltdsrGlta 52 
                 L++h  a++   d +g tpLh Aa +g+ ++v+lLl +gad ++  s+G+ta
  KOO21059.1 386 LVQHH-ASLEVVDARGRTPLHAAAARGSGTLVELLLRHGADETVEASDGSTA 436
                 78887.67777777777*********************************98 PP

>> Ank_4  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.0       2.9   4.3e+03      33      51 ..     135     153 ..     129     157 .. 0.80
   2 !   18.8   0.0   1.2e-06    0.0018      17      47 ..     350     379 ..     348     383 .. 0.90
   3 !   34.0   0.0   2.1e-11   3.2e-08       3      55 .]     369     420 ..     369     420 .. 0.98

  Alignments for each domain:
  == domain 1  score: -1.5 bits;  conditional E-value: 2.9
       Ank_4  33 rsGetalhiAakrgnveil 51 
                 r G+ al  Aa r +++++
  KOO21059.1 135 RLGLDALLSAAARLDLQAA 153
                 5689999999999999886 PP

  == domain 2  score: 18.8 bits;  conditional E-value: 1.2e-06
       Ank_4  17 vrlLlekgadinaqdnrsGetalhiAakrgn 47 
                 ++ Ll +ga++na+ ++ G+ta+h A+ rg+
  KOO21059.1 350 IEALLLRGAQVNAV-DETGRTAIHWACERGQ 379
                 6678889*******.**************98 PP

  == domain 3  score: 34.0 bits;  conditional E-value: 2.1e-11
       Ank_4   3 taLhyaaisgrlelvrlLlekgadinaqdnrsGetalhiAakrgnveilklLl 55 
                 ta+h+a++ g+  +++lL+++ a++  + +++G+t+lh Aa rg+   ++lLl
  KOO21059.1 369 TAIHWACERGQPLIAALLVQHHASLEVV-DARGRTPLHAAAARGSGTLVELLL 420
                 79*************************9.**********************98 PP

>> Ank  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.7   0.1      0.03        45      17      31 ..     349     364 ..     342     365 .. 0.82
   2 !   16.7   0.0   4.9e-06    0.0073       2      31 ..     367     397 ..     366     398 .. 0.92
   3 !   18.6   0.0   1.2e-06    0.0018       2      26 ..     400     425 ..     399     432 .. 0.85

  Alignments for each domain:
  == domain 1  score: 4.7 bits;  conditional E-value: 0.03
                 HHHHHH.TTTSTTCBT CS
         Ank  17 iiklLL.hGAnlnald 31 
                  i++LL +GA +na+d
  KOO21059.1 349 LIEALLlRGAQVNAVD 364
                 7888877*******99 PP

  == domain 2  score: 16.7 bits;  conditional E-value: 4.9e-06
                 SBBHHHHHHHHTTHHHHHHHH.TTTSTTCBT CS
         Ank   2 GnTPLHlAatngkkriiklLL.hGAnlnald 31 
                 G+T+ H+A+ +g++ i+ lL+ h A+l  +d
  KOO21059.1 367 GRTAIHWACERGQPLIAALLVqHHASLEVVD 397
                 99*******************9899998877 PP

  == domain 3  score: 18.6 bits;  conditional E-value: 1.2e-06
                 SBBHHHHHHHHTTHHHHHHHH.TTTS CS
         Ank   2 GnTPLHlAatngkkriiklLL.hGAn 26 
                 G+TPLH Aa +g+   ++lLL hGA+
  KOO21059.1 400 GRTPLHAAAARGSGTLVELLLrHGAD 425
                 9*****999677777**********9 PP

>> Ank_3  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.0       2.4   3.5e+03      17      31 .]     349     362 ..     339     362 .. 0.80
   2 !   14.6   0.0   2.3e-05     0.035       2      28 ..     367     392 ..     366     395 .. 0.88
   3 !   21.4   0.0   1.5e-07   0.00023       2      28 ..     400     425 ..     399     428 .. 0.95

  Alignments for each domain:
  == domain 1  score: -0.7 bits;  conditional E-value: 2.4
       Ank_3  17 ivkfLlenkgadvna 31 
                 ++++Ll  +ga vna
  KOO21059.1 349 LIEALLL-RGAQVNA 362
                 6999999.9**9996 PP

  == domain 2  score: 14.6 bits;  conditional E-value: 2.3e-05
       Ank_3   2 GetpLhlAarsgnleivkfLlenkgad 28 
                 G+t++h+A++ g + i+ +L++ ++a 
  KOO21059.1 367 GRTAIHWACERGQPLIAALLVQ-HHAS 392
                 9**************9999999.6665 PP

  == domain 3  score: 21.4 bits;  conditional E-value: 1.5e-07
       Ank_3   2 GetpLhlAarsgnleivkfLlenkgad 28 
                 G+tpLh Aa  g+ ++v++Ll+ +gad
  KOO21059.1 400 GRTPLHAAAARGSGTLVELLLR-HGAD 425
                 9*********************.9*99 PP

>> TPR_2  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.1   9.3e-06     0.014       4      30 ..     462     488 ..     459     491 .. 0.91
   2 !    8.2   0.1    0.0019       2.9       1      34 []     503     536 ..     503     536 .. 0.93
   3 !   15.3   0.1   1.1e-05     0.016       7      34 .]     543     570 ..     541     570 .. 0.94

  Alignments for each domain:
  == domain 1  score: 15.5 bits;  conditional E-value: 9.3e-06
       TPR_2   4 lynlGlayyklgdyeeAleafekAlel 30 
                   ++++a+y++g + +A  afekAle 
  KOO21059.1 462 MARRANALYRRGLFGKATTAFEKALEV 488
                 579**********************96 PP

  == domain 2  score: 8.2 bits;  conditional E-value: 0.0019
       TPR_2   1 aealynlGlayyklgdyeeAleafekAleldPnn 34 
                 a +++n ++a++k g++  Ale   +A++  P++
  KOO21059.1 503 ATLHFNCARAAIKEGRHVFALEQATEAVRARPDY 536
                 5689*************************99985 PP

  == domain 3  score: 15.3 bits;  conditional E-value: 1.1e-05
       TPR_2   7 lGlayyklgdyeeAleafekAleldPnn 34 
                 +++++++l d++ A++a++++ +l+P+n
  KOO21059.1 543 QAECHMELFDFDAAAAAYRRVASLEPHN 570
                 799***********************97 PP

>> TPR_1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.8   0.1   2.5e-05     0.038       6      30 ..     464     488 ..     460     489 .. 0.94
   2 ?    2.4   0.0       0.1   1.5e+02       3      34 .]     505     536 ..     503     536 .. 0.91
   3 !   11.5   0.1   0.00014      0.21       8      34 .]     544     570 ..     541     570 .. 0.94

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 2.5e-05
                 HHHHHHHHTT-HHHHHHHHHHHHHH CS
       TPR_1   6 nlGnayfklgkydeAleyyekALel 30 
                 +++na+++ g + +A  ++ekALe+
  KOO21059.1 464 RRANALYRRGLFGKATTAFEKALEV 488
                 89*********************97 PP

  == domain 2  score: 2.4 bits;  conditional E-value: 0.1
                 HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH CS
       TPR_1   3 alynlGnayfklgkydeAleyyekALelnPnn 34 
                  ++n + a  k g++  Ale   +A++ +P++
  KOO21059.1 505 LHFNCARAAIKEGRHVFALEQATEAVRARPDY 536
                 78999********************9999986 PP

  == domain 3  score: 11.5 bits;  conditional E-value: 0.00014
                 HHHHHHTT-HHHHHHHHHHHHHHSTTH CS
       TPR_1   8 GnayfklgkydeAleyyekALelnPnn 34 
                 + ++++l ++d A ++y+++ +l+P+n
  KOO21059.1 544 AECHMELFDFDAAAAAYRRVASLEPHN 570
                 789**********************97 PP

>> TPR_12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.5   0.7   2.8e-07   0.00042       3      76 ..     460     534 ..     458     535 .. 0.89
   2 ?   -0.6   0.4       1.1   1.6e+03       9      29 ..     543     563 ..     537     567 .. 0.64
   3 ?   -1.7   0.3       2.4   3.6e+03      60      76 ..     625     641 ..     620     642 .. 0.83

  Alignments for each domain:
  == domain 1  score: 20.5 bits;  conditional E-value: 2.8e-07
      TPR_12   3 atalnnlaavlrrlgrydeAlellekaleiarrl..lGpdhpltattlrnLgrlyralgryeeAlelleealaiae 76 
                 a ++ ++a++l+r+g + +A + +ekale+a+ +    +   ++at  +n +r+  + gr+  Ale  +ea+++++
  KOO21059.1 460 AGMA-RRANALYRRGLFGKATTAFEKALEVATGAgaSVCSATDVATLHFNCARAAIKEGRHVFALEQATEAVRARP 534
                 5566.89************************877335567799*****************************9875 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 1.1
      TPR_12   9 laavlrrlgrydeAlelleka 29 
                  a+++++l ++d A + ++++
  KOO21059.1 543 QAECHMELFDFDAAAAAYRRV 563
                 566666666666666666665 PP

  == domain 3  score: -1.7 bits;  conditional E-value: 2.4
      TPR_12  60 ryeeAlelleealaiae 76 
                 + + A ++++++++++e
  KOO21059.1 625 ERARASAMFQRVTRAYE 641
                 667899*******9998 PP

>> TPR_8  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.9   0.0     0.025        38       6      30 ..     464     488 ..     460     490 .. 0.88
   2 !   10.1   0.0   0.00052      0.77       7      34 .]     543     570 ..     541     570 .. 0.91

  Alignments for each domain:
  == domain 1  score: 4.9 bits;  conditional E-value: 0.025
                 HHHHHHHHTT-HHHHHHHHHHHHHH CS
       TPR_8   6 nlgsiylklgdyeeAkeyyekalel 30 
                 + ++++   g + +A  ++ekale 
  KOO21059.1 464 RRANALYRRGLFGKATTAFEKALEV 488
                 67899999999************97 PP

  == domain 2  score: 10.1 bits;  conditional E-value: 0.00052
                 HHHHHHHTT-HHHHHHHHHHHHHHHHH. CS
       TPR_8   7 lgsiylklgdyeeAkeyyekaleldpdn 34 
                  + ++++l d+++A ++y+++ +l+p n
  KOO21059.1 543 QAECHMELFDFDAAAAAYRRVASLEPHN 570
                 57899********************975 PP

>> TPR_16  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   2.3       2.7     4e+03      32      60 ..     341     370 ..     333     374 .. 0.74
   2 ?    2.6   0.1      0.14   2.2e+02      22      41 ..     394     413 ..     390     423 .. 0.88
   3 ?    4.0   0.8     0.053        79      40      63 ..     465     488 ..     456     494 .. 0.63
   4 !   18.3   3.9   1.8e-06    0.0027       4      61 ..     510     564 ..     507     571 .. 0.92

  Alignments for each domain:
  == domain 1  score: -1.4 bits;  conditional E-value: 2.7
      TPR_16  32 daaeAllllgdaalrqgrlaeAa.alyraa 60 
                 + aeA+ +l +a+l +g    A+ +  r a
  KOO21059.1 341 RSAEAAGALIEALLLRGAQVNAVdETGRTA 370
                 467888888888888888888877766665 PP

  == domain 2  score: 2.6 bits;  conditional E-value: 0.14
      TPR_16  22 aalkrdpssPdaaeAllllg 41 
                 +++++++++P++a+A+ ++g
  KOO21059.1 394 EVVDARGRTPLHAAAARGSG 413
                 578999999*******9998 PP

  == domain 3  score: 4.0 bits;  conditional E-value: 0.053
      TPR_16  40 lgdaalrqgrlaeAaalyraalra 63 
                 +++a++r+g + +A  ++++al+ 
  KOO21059.1 465 RANALYRRGLFGKATTAFEKALEV 488
                 566666666666666666666543 PP

  == domain 4  score: 18.3 bits;  conditional E-value: 1.8e-06
      TPR_16   4 araalragdyddAaaaleaalkrdpssPdaaeAllllgdaalrqgrlaeAaalyraal 61 
                 araa++ g+   A++++++a++++   Pd a A +l ++++ ++ ++++Aaa+yr+ +
  KOO21059.1 510 ARAAIKEGRHVFALEQATEAVRAR---PDYANAGMLQAECHMELFDFDAAAAAYRRVA 564
                 899999999999************...****************************987 PP

>> HTH_37  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.1       2.1   3.2e+03      50      76 ..      28      53 ..      22      55 .. 0.79
   2 ?   12.2   0.3   9.1e-05      0.14       9      74 ..      83     151 ..      80     153 .. 0.88

  Alignments for each domain:
  == domain 1  score: -1.8 bits;  conditional E-value: 2.1
                HHHTT--TT--HHHHHHHHHHTTEEEE CS
      HTH_37 50 rllrgklsrfsldkLlnlltalGqkve 76
                +l+  +l++++ +++ + l al ++ +
  KOO21059.1 28 SLR-HRLQQCETERMQSQLHALQLEAQ 53
                444.79999999999999999977765 PP

  == domain 2  score: 12.2 bits;  conditional E-value: 9.1e-05
                 HHHHHHHHHHHHHH...HHHHHHHCT--HHHHHHHHT--HHHHHHHHTT--TT--HHHHHHHHHHTTEE CS
      HTH_37   9 daeelkaKaqlala...iaeliekrelsqseaaqllgiaqPkvsrllrgklsrfsldkLlnlltalGqk 74 
                 d ++++ ++  a++   i+el +++  +  e+a++lg   P  +     ++sr+ ld+Ll+++++l+++
  KOO21059.1  83 DHDKREERTVEAAQlarINELSRELIATRFELAAALGLLPPTATPSASTEVSRLGLDALLSAAARLDLQ 151
                 56667777777766666*************************************************976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (767 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1281  (0.0714485); expected 358.6 (0.02)
Passed bias filter:                      545  (0.0303977); expected 358.6 (0.02)
Passed Vit filter:                        94  (0.0052429); expected 17.9 (0.001)
Passed Fwd filter:                        18  (0.00100396); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.77u 0.29s 00:00:01.06 Elapsed: 00:00:00.45
# Mc/sec: 5085.11
//
Query:       KOO21060.1  [L=473]
Description: hypothetical protein Ctob_002656 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.3e-15   55.7   1.2      9e-05   22.6   0.0    3.7  3  TPR_17          Tetratricopeptide repeat
    2.4e-13   50.8   0.0    4.8e-13   49.8   0.0    1.5  1  2OG-FeII_Oxy_3  2OG-Fe(II) oxygenase superfamily
    1.3e-12   46.9   6.5    0.00096   18.9   0.1    5.1  4  TPR_1           Tetratricopeptide repeat
    4.3e-12   45.5   9.3      1e-06   28.3   0.1    4.0  4  TPR_11          TPR repeat
    1.6e-11   43.4  12.7      0.013   15.6   0.1    5.2  4  TPR_2           Tetratricopeptide repeat
      2e-08   34.7  14.2    7.5e-05   23.3   0.3    4.3  4  TPR_16          Tetratricopeptide repeat
    7.6e-07   29.6   9.7     0.0046   17.4   1.5    3.5  3  TPR_19          Tetratricopeptide repeat
    5.3e-05   23.4  12.5      0.025   14.9   5.1    3.3  3  TPR_12          Tetratricopeptide repeat
    0.00046   20.2   8.1        2.6    8.5   0.1    4.9  5  TPR_8           Tetratricopeptide repeat
    0.00094   19.8  12.3       0.93   10.5   0.3    5.0  4  TPR_14          Tetratricopeptide repeat
  ------ inclusion threshold ------
      0.064   13.1   8.9         15    5.6   0.1    4.8  4  TPR_10          Tetratricopeptide repeat
      0.086   13.5   4.2         13    6.8   0.0    4.5  3  TPR_4           Tetratricopeptide repeat
       0.21   11.7   3.3        9.8    6.5   0.1    3.6  3  TPR_7           Tetratricopeptide repeat
       0.66    9.7   8.6        1.5    8.5   8.6    1.6  1  TPR_21          Tetratricopeptide repeat-like domain


Domain annotation for each model (and alignments):
>> TPR_17  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.2   0.0   3.3e-05     0.042       2      33 ..      33      64 ..      32      65 .. 0.95
   2 !   22.6   0.0     7e-08     9e-05       3      33 ..      68     100 ..      67     101 .. 0.85
   3 !   15.7   0.1   1.1e-05     0.014       1      33 [.     102     134 ..     102     135 .. 0.97

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 3.3e-05
      TPR_17  2 ylkaleldPnnadaynnLAelllknGdlmtAr 33
                y+++++++P  a ++nn A ++l++G++ +A+
  KOO21060.1 33 YQEVIAINPGIAAVHNNVAAIFLSQGKKLDAE 64
                9*************************998887 PP

  == domain 2  score: 22.6 bits;  conditional E-value: 7e-08
      TPR_17   3 lkaleldPnnadaynnLAelllknGd..lmtAr 33 
                 +ka++l P +a+a++nLA +l+++Gd  l +A+
  KOO21060.1  68 RKAIKLKPEYAEAHYNLAIILSERGDehLPEAQ 100
                 69***********************83344666 PP

  == domain 3  score: 15.7 bits;  conditional E-value: 1.1e-05
      TPR_17   1 lylkaleldPnnadaynnLAelllknGdlmtAr 33 
                 l+++a+++   +a a+++L+++l+++ +l++Ar
  KOO21060.1 102 LCEQAIAHKDGYAAAHHLLGNILSSLQQLDDAR 134
                 79*****************************98 PP

>> 2OG-FeII_Oxy_3  2OG-Fe(II) oxygenase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.8   0.0   3.7e-16   4.8e-13       1      95 [.     274     385 ..     274     386 .. 0.80

  Alignments for each domain:
  == domain 1  score: 49.8 bits;  conditional E-value: 3.7e-16
                     -EEEEE-TT-EEEEE-SS----TT.-.EEEEEEEEE....ET-B--EEE...........................---TT-EEEEE-..B-T.. CS
  2OG-FeII_Oxy_3   1 lqvlrygegqeykpHvDnfekeegsgqrrltvllyLnekeseeGGelelyekdk.................eavkikpkkgrlvlFesdellp.. 76 
                     lqv++y ++  ++ H+D++    +  +r lt+++yLn  +   GGe ++   dk                     +kp++g+++lF++++  +  
      KOO21060.1 274 LQVVHYSTNATFSMHHDSS----KFHSRLLTAFYYLN--DVPRGGETAFPAADKamtpgeamklaepaahgLGLIVKPRRGSALLFYNHDE-Sga 361
                     699***9999*******74....4589*********8..4579***6664444466666666666666677667779***********766.35* PP

                     ......EEE--B.-SS-EEEEEEEE CS
  2OG-FeII_Oxy_3  77 ......HevlpvtkggeRlsltgwi 95 
                           H++++v + ge++ +++wi
      KOO21060.1 362 vdptavHAGCRVLE-GEKWGANHWI 385
                     ************66.6********8 PP

>> TPR_1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.4   0.0   0.00036      0.46      12      32 ..      21      41 ..      12      42 .. 0.82
   2 !   18.9   0.1   7.5e-07   0.00096       1      34 []      44      77 ..      44      77 .. 0.96
   3 !    7.2   0.2    0.0038       4.8       1      16 [.      78      93 ..      78     113 .. 0.75
   4 !    9.8   0.0   0.00054      0.69       1      27 [.     114     140 ..     114     143 .. 0.91

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00036
                HHTT-HHHHHHHHHHHHHHST CS
       TPR_1 12 fklgkydeAleyyekALelnP 32
                ++  +++ Al+ y++++ +nP
  KOO21060.1 21 HRSHNLQAALASYQEVIAINP 41
                566799**************9 PP

  == domain 2  score: 18.9 bits;  conditional E-value: 7.5e-07
                HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH CS
       TPR_1  1 akalynlGnayfklgkydeAleyyekALelnPnn 34
                a +++n +++++++gk  +A++  +kA++l P++
  KOO21060.1 44 AAVHNNVAAIFLSQGKKLDAEASWRKAIKLKPEY 77
                679*****************************86 PP

  == domain 3  score: 7.2 bits;  conditional E-value: 0.0038
                HHHHHHHHHHHHHTT- CS
       TPR_1  1 akalynlGnayfklgk 16
                a+a+ynl+ ++ + g+
  KOO21060.1 78 AEAHYNLAIILSERGD 93
                89**********9998 PP

  == domain 4  score: 9.8 bits;  conditional E-value: 0.00054
                 HHHHHHHHHHHHHTT-HHHHHHHHHHH CS
       TPR_1   1 akalynlGnayfklgkydeAleyyekA 27 
                 a a+  lGn++ +l+++d+A   y+ A
  KOO21060.1 114 AAAHHLLGNILSSLQQLDDARTQYQLA 140
                 7899****************9999865 PP

>> TPR_11  TPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.2   3.5e-06    0.0044      10      42 .]      26      58 ..      23      58 .. 0.95
   2 !   28.3   0.1   8.1e-10     1e-06       4      38 ..      54      88 ..      53      92 .. 0.87
   3 ?    2.9   0.0     0.071        92      18      38 ..     104     124 ..      97     128 .. 0.86
   4 !    6.5   0.1    0.0051       6.6       1      20 [.     121     140 ..     121     143 .. 0.91

  Alignments for each domain:
  == domain 1  score: 16.7 bits;  conditional E-value: 3.5e-06
      TPR_11 10 yeeAieaYkkAlkldPdnaeayynLGlayykqG 42
                + +A+++Y++ ++++P  a +++n +++++ qG
  KOO21060.1 26 LQAALASYQEVIAINPGIAAVHNNVAAIFLSQG 58
                789**************************9998 PP

  == domain 2  score: 28.3 bits;  conditional E-value: 8.1e-10
      TPR_11  4 yyeqGkyeeAieaYkkAlkldPdnaeayynLGlay 38
                + +qGk  +A ++++kA+kl+P++aea+ynL+ ++
  KOO21060.1 54 FLSQGKKLDAEASWRKAIKLKPEYAEAHYNLAIIL 88
                778888889999*******************9876 PP

  == domain 3  score: 2.9 bits;  conditional E-value: 0.071
      TPR_11  18 kkAlkldPdnaeayynLGlay 38 
                 ++A++ +  +a a++ LG+++
  KOO21060.1 104 EQAIAHKDGYAAAHHLLGNIL 124
                 5888888889********987 PP

  == domain 4  score: 6.5 bits;  conditional E-value: 0.0051
      TPR_11   1 GdayyeqGkyeeAieaYkkA 20 
                 G+++ +++++++A ++Y+ A
  KOO21060.1 121 GNILSSLQQLDDARTQYQLA 140
                 99***************966 PP

>> TPR_2  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.6   0.0   4.4e-05     0.056       4      33 ..      13      42 ..      11      43 .. 0.94
   2 !   15.6   0.1     1e-05     0.013       1      33 [.      44      76 ..      44      77 .. 0.95
   3 !    7.3   0.2    0.0045       5.7       1      30 [.      78     109 ..      78     113 .. 0.84
   4 !   12.5   0.1   9.6e-05      0.12       1      27 [.     114     140 ..     114     145 .. 0.92

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 4.4e-05
       TPR_2  4 lynlGlayyklgdyeeAleafekAleldPn 33
                +y+ +  + ++ +++ Al+ ++++++++P+
  KOO21060.1 13 HYQAAVDAHRSHNLQAALASYQEVIAINPG 42
                899999***********************6 PP

  == domain 2  score: 15.6 bits;  conditional E-value: 1e-05
       TPR_2  1 aealynlGlayyklgdyeeAleafekAleldPn 33
                a +++n + + + +g+  +A++ ++kA++l P+
  KOO21060.1 44 AAVHNNVAAIFLSQGKKLDAEASWRKAIKLKPE 76
                6799****************************8 PP

  == domain 3  score: 7.3 bits;  conditional E-value: 0.0045
       TPR_2   1 aealynlGlayyklgdy..eeAleafekAlel 30 
                 aea+ynl+ ++ ++gd    eA +++e+A+++
  KOO21060.1  78 AEAHYNLAIILSERGDEhlPEAQQLCEQAIAH 109
                 79************986558999999999875 PP

  == domain 4  score: 12.5 bits;  conditional E-value: 9.6e-05
       TPR_2   1 aealynlGlayyklgdyeeAleafekA 27 
                 a a++ lG+++  l+++++A+  ++ A
  KOO21060.1 114 AAAHHLLGNILSSLQQLDDARTQYQLA 140
                 689*********************987 PP

>> TPR_16  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.8   1.7e-05     0.022       2      54 ..      15      64 ..      14      65 .. 0.91
   2 !   23.3   0.3   5.8e-08   7.5e-05       4      49 ..      51      93 ..      49     109 .. 0.82
   3 !   11.0   1.0    0.0004      0.51      13      61 ..      96     141 ..      94     148 .. 0.86
   4 ?   -0.9   0.2       2.2   2.8e+03       9      32 ..     403     426 ..     399     432 .. 0.62

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 1.7e-05
      TPR_16  2 alaraalragdyddAaaaleaalkrdpssPdaaeAllllgdaalrqgrlaeAa 54
                ++a +a r+ + ++A+a ++++++ +   P  a+ +++ + ++l qg   +A+
  KOO21060.1 15 QAAVDAHRSHNLQAALASYQEVIAIN---PGIAAVHNNVAAIFLSQGKKLDAE 64
                6777888999****************...*****************9998887 PP

  == domain 2  score: 23.3 bits;  conditional E-value: 5.8e-08
      TPR_16  4 araalragdyddAaaaleaalkrdpssPdaaeAllllgdaalrqgr 49
                a ++l +g+  dA+a ++ a+k+    P+ aeA+++l+ ++ ++g+
  KOO21060.1 51 AAIFLSQGKKLDAEASWRKAIKLK---PEYAEAHYNLAIILSERGD 93
                668999******************...***************8864 PP

  == domain 3  score: 11.0 bits;  conditional E-value: 0.0004
      TPR_16  13 yddAaaaleaalkrdpssPdaaeAllllgdaalrqgrlaeAaalyraal 61 
                  ++A+ + e+a++        a+A+ llg+++  ++ l++A+ +y+ a 
  KOO21060.1  96 LPEAQQLCEQAIAHK---DGYAAAHHLLGNILSSLQQLDDARTQYQLAE 141
                 568888899999999...99**********************8888775 PP

  == domain 4  score: -0.9 bits;  conditional E-value: 2.2
      TPR_16   9 ragdyddAaaaleaalkrdpssPd 32 
                 +a d +  a+a+e+ +++d+++P 
  KOO21060.1 403 EATDAEPGAEAAERETESDGDTPS 426
                 444444456666777777766665 PP

>> TPR_19  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.5   0.3    0.0021       2.7       5      46 ..      24      65 ..      20      68 .. 0.92
   2 !    9.3   0.1    0.0012       1.6       9      40 ..      62      93 ..      54      94 .. 0.82
   3 !   17.4   1.5   3.6e-06    0.0046       6      46 ..      95     135 ..      90     140 .. 0.92

  Alignments for each domain:
  == domain 1  score: 8.5 bits;  conditional E-value: 0.0021
      TPR_19  5 gdyaeAlalleqalqedpknaearllLAeallalgqldeAea 46
                 ++++Ala ++++++ +p+ a++  + A + l++g   +Aea
  KOO21060.1 24 HNLQAALASYQEVIAINPGIAAVHNNVAAIFLSQGKKLDAEA 65
                589********************************9999987 PP

  == domain 2  score: 9.3 bits;  conditional E-value: 0.0012
      TPR_19  9 eAlalleqalqedpknaearllLAeallalgq 40
                +A a  ++a++ +p++aea ++LA++l + g+
  KOO21060.1 62 DAEASWRKAIKLKPEYAEAHYNLAIILSERGD 93
                6777778999*****************99886 PP

  == domain 3  score: 17.4 bits;  conditional E-value: 3.6e-06
      TPR_19   6 dyaeAlalleqalqedpknaearllLAeallalgqldeAea 46 
                  + eA++l eqa++++ ++a+a  lL ++l +l qld+A+ 
  KOO21060.1  95 HLPEAQQLCEQAIAHKDGYAAAHHLLGNILSSLQQLDDART 135
                 6789***********************************96 PP

>> TPR_12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.9   0.8   0.00034      0.43       8      75 ..      15      74 ..       7      76 .. 0.75
   2 !   11.6   0.6    0.0002      0.26       2      73 ..      43     108 ..      42     111 .. 0.78
   3 !   14.9   5.1     2e-05     0.025       3      70 ..      78     139 ..      76     141 .. 0.87

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00034
      TPR_12  8 nlaavlrrlgrydeAlellekaleiarrllGpdhpltattlrnLgrlyralgryeeAlelleealaia 75
                + a+  +r  +++ Al+ ++++++i         p+ a++ +n + +++ +g+  +A++  ++a++++
  KOO21060.1 15 QAAVDAHRSHNLQAALASYQEVIAIN--------PGIAAVHNNVAAIFLSQGKKLDAEASWRKAIKLK 74
                55555566777777777777776666........569********************99999998876 PP

  == domain 2  score: 11.6 bits;  conditional E-value: 0.0002
      TPR_12   2 vatalnnlaavlrrlgrydeAlellekaleiarrllGpdhpltattlrnLgrlyral..gryeeAlelleeala 73 
                 +a+++nn+aa+ + +g+  +A++  +ka+ +      p+   +a++ +nL+++++++  +++ eA++l e+a+a
  KOO21060.1  43 IAAVHNNVAAIFLSQGKKLDAEASWRKAIKLK-----PE---YAEAHYNLAIILSERgdEHLPEAQQLCEQAIA 108
                 6889999*********************8887.....55...58888888888876623457778777777776 PP

  == domain 3  score: 14.9 bits;  conditional E-value: 2e-05
      TPR_12   3 atalnnlaavlrrlgrydeAlellekaleiarrllGpdhpltattlrnLgrlyralgryeeAlellee 70 
                 a a++nla +l ++g+     e+l +a ++++++   +++++a++ + Lg +++ l ++++A+  ++ 
  KOO21060.1  78 AEAHYNLAIILSERGD-----EHLPEAQQLCEQAI-AHKDGYAAAHHLLGNILSSLQQLDDARTQYQL 139
                 78899***********.....88888888886665.45679***********************9985 PP

>> TPR_8  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.7   0.0      0.14   1.8e+02      16      32 ..      25      41 ..      22      42 .. 0.92
   2 !    8.5   0.1     0.002       2.6       3      33 ..      46      76 ..      44      77 .. 0.91
   3 ?    2.6   0.0      0.15     2e+02       1      18 [.      78      95 ..      78     108 .. 0.79
   4 !    7.7   0.1    0.0037       4.7       2      27 ..     115     140 ..     114     141 .. 0.90
   5 ?   -2.7   0.3       7.8     1e+04      10      21 ..     431     442 ..     430     442 .. 0.84

  Alignments for each domain:
  == domain 1  score: 2.7 bits;  conditional E-value: 0.14
                -HHHHHHHHHHHHHHHH CS
       TPR_8 16 dyeeAkeyyekaleldp 32
                ++++A ++y++++ ++p
  KOO21060.1 25 NLQAALASYQEVIAINP 41
                6789***********99 PP

  == domain 2  score: 8.5 bits;  conditional E-value: 0.002
                HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH CS
       TPR_8  3 ayynlgsiylklgdyeeAkeyyekaleldpd 33
                +++n + i l++g++  A+++ +ka++l+p+
  KOO21060.1 46 VHNNVAAIFLSQGKKLDAEASWRKAIKLKPE 76
                6789999***********************7 PP

  == domain 3  score: 2.6 bits;  conditional E-value: 0.15
                CCHHHHHHHHHHHTT-HH CS
       TPR_8  1 aeayynlgsiylklgdye 18
                aea+ynl+ i+++ gd +
  KOO21060.1 78 AEAHYNLAIILSERGDEH 95
                799*********999976 PP

  == domain 4  score: 7.7 bits;  conditional E-value: 0.0037
                 CHHHHHHHHHHHTT-HHHHHHHHHHH CS
       TPR_8   2 eayynlgsiylklgdyeeAkeyyeka 27 
                  a+++lg+i+++l++++ A   y+ a
  KOO21060.1 115 AAHHLLGNILSSLQQLDDARTQYQLA 140
                 6899***************9999865 PP

  == domain 5  score: -2.7 bits;  conditional E-value: 7.8
                 HHHHTT-HHHHH CS
       TPR_8  10 iylklgdyeeAk 21 
                 + +++++ e+Ak
  KOO21060.1 431 AAMNKKKREKAK 442
                 578999999997 PP

>> TPR_14  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.9   0.1    0.0049       6.2       5      38 ..      14      47 ..      10      53 .. 0.82
   2 !    8.9   0.1    0.0023       2.9       8      42 ..      51      85 ..      50      87 .. 0.88
   3 !   10.5   0.3   0.00072      0.93       2      42 ..      79     121 ..      78     123 .. 0.92
   4 !    7.5   0.2    0.0067       8.6       2      28 ..     115     141 ..     114     146 .. 0.88

  Alignments for each domain:
  == domain 1  score: 7.9 bits;  conditional E-value: 0.0049
      TPR_14  5 lalaeallalGdpdeAiallrralalaPddaeaw 38
                +++a    ++ ++++A+a +++++a +P+ a+++
  KOO21060.1 14 YQAAVDAHRSHNLQAALASYQEVIAINPGIAAVH 47
                55555567899*****************998886 PP

  == domain 2  score: 8.9 bits;  conditional E-value: 0.0023
      TPR_14  8 aeallalGdpdeAiallrralalaPddaeawllla 42
                a+++l +G+  +A+a  r+a++l P+ aea++ la
  KOO21060.1 51 AAIFLSQGKKLDAEASWRKAIKLKPEYAEAHYNLA 85
                566778888889********************999 PP

  == domain 3  score: 10.5 bits;  conditional E-value: 0.00072
      TPR_14   2 eallalaeallalGd..pdeAiallrralalaPddaeawllla 42 
                 ea++ la +l ++Gd  + eA +l+++a+a+  + a+a+ ll+
  KOO21060.1  79 EAHYNLAIILSERGDehLPEAQQLCEQAIAHKDGYAAAHHLLG 121
                 8999********9987799************999*****9998 PP

  == domain 4  score: 7.5 bits;  conditional E-value: 0.0067
      TPR_14   2 eallalaeallalGdpdeAiallrral 28 
                 +a+ +l+ +l  l+++d+A++ ++ a 
  KOO21060.1 115 AAHHLLGNILSSLQQLDDARTQYQLAE 141
                 68999******************9875 PP

>> TPR_10  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.5   0.2      0.23     3e+02      16      31 ..      24      39 ..      15      40 .. 0.74
   2 ?    2.7   0.0     0.097   1.2e+02       6      30 ..      48      72 ..      43      74 .. 0.90
   3 ?    5.6   0.1     0.012        15       7      30 ..      83     108 ..      79     108 .. 0.87
   4 ?    5.0   0.3     0.018        23       7      26 ..     119     138 ..     114     140 .. 0.87

  Alignments for each domain:
  == domain 1  score: 1.5 bits;  conditional E-value: 0.23
      TPR_10 16 grydeAealleealai 31
                 ++++A+a ++e++ai
  KOO21060.1 24 HNLQAALASYQEVIAI 39
                5778888888888876 PP

  == domain 2  score: 2.7 bits;  conditional E-value: 0.097
      TPR_10  6 nNLanalrqrgrydeAealleeala 30
                nN a++  ++g+  +Aea  ++a+ 
  KOO21060.1 48 NNVAAIFLSQGKKLDAEASWRKAIK 72
                99********************997 PP

  == domain 3  score: 5.6 bits;  conditional E-value: 0.012
      TPR_10   7 NLanalrqrgr..ydeAealleeala 30 
                 NLa++l++rg+  + eA +l+e+a+a
  KOO21060.1  83 NLAIILSERGDehLPEAQQLCEQAIA 108
                 9******9998557899999999986 PP

  == domain 4  score: 5.0 bits;  conditional E-value: 0.018
      TPR_10   7 NLanalrqrgrydeAealle 26 
                  L+n+l++++++d+A+  ++
  KOO21060.1 119 LLGNILSSLQQLDDARTQYQ 138
                 59**************9886 PP

>> TPR_4  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.8   0.0    0.0099        13       1      16 [.      78      93 ..      78     105 .. 0.75
   2 ?    4.5   0.2     0.056        72       1      23 [.     114     136 ..     114     138 .. 0.91
   3 ?    2.4   0.1      0.27   3.4e+02       1      15 [.     133     147 ..     133     150 .. 0.88

  Alignments for each domain:
  == domain 1  score: 6.8 bits;  conditional E-value: 0.0099
       TPR_4  1 arallaLArallalGd 16
                a a+++LA  l ++Gd
  KOO21060.1 78 AEAHYNLAIILSERGD 93
                679************9 PP

  == domain 2  score: 4.5 bits;  conditional E-value: 0.056
       TPR_4   1 arallaLArallalGdldeAral 23 
                 a+a+++L+  l  l +ld+Ar+ 
  KOO21060.1 114 AAAHHLLGNILSSLQQLDDARTQ 136
                 689*****************986 PP

  == domain 3  score: 2.4 bits;  conditional E-value: 0.27
       TPR_4   1 arallaLArallalG 15 
                 ar+++ LA++l+  G
  KOO21060.1 133 ARTQYQLAEVLAGGG 147
                 689********9877 PP

>> TPR_7  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.0       5.5     7e+03      15      24 ..      26      35 ..      11      42 .. 0.56
   2 ?    3.8   0.1     0.055        71       1      29 [.      80     108 ..      80     112 .. 0.80
   3 ?    6.5   0.1    0.0077       9.8       1      24 [.     116     139 ..     116     148 .. 0.90

  Alignments for each domain:
  == domain 1  score: -2.5 bits;  conditional E-value: 5.5
       TPR_7 15 yeeAielyeq 24
                 + A+  y++
  KOO21060.1 26 LQAALASYQE 35
                3445555555 PP

  == domain 2  score: 3.8 bits;  conditional E-value: 0.055
       TPR_7   1 aLlnLarlysr..lGdyeeAielyeqsLalt 29 
                 a++nLa + s+  + +  eA +l+eq  a++
  KOO21060.1  80 AHYNLAIILSErgDEHLPEAQQLCEQ--AIA 108
                 689********777788889999998..655 PP

  == domain 3  score: 6.5 bits;  conditional E-value: 0.0077
       TPR_7   1 aLlnLarlysrlGdyeeAielyeq 24 
                 a++ L+++ s+l++ ++A + y+ 
  KOO21060.1 116 AHHLLGNILSSLQQLDDARTQYQL 139
                 6899**************999986 PP

>> TPR_21  Tetratricopeptide repeat-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.5   8.6    0.0012       1.5      33     172 ..       4     140 ..       1     149 [. 0.81

  Alignments for each domain:
  == domain 1  score: 8.5 bits;  conditional E-value: 0.0012
      TPR_21  33 eeqaeeAsalYqqlqeaveakdaakakeaaeeladeyggtaYaalaaLllAkaaveagdlaaAkaqLewvlekakdeelkalarlRLarvllaekk..y 129
                 ++q++   + Yq+ ++a ++++ ++a ++++e+++ ++g   aa+ +  +A    ++g+  +A+a+ +++++ +++    a a+  La +l + ++  +
  KOO21060.1   4 QQQQQLLMTHYQAAVDAHRSHNLQAALASYQEVIAINPGI--AAVHN-NVAAIFLSQGKKLDAEASWRKAIKLKPEY---AEAHYNLAIILSERGDehL 96 
                 5666667789999999999999999999999999999998..44444.67788899999999*********999776...5689999999999765226 PP

      TPR_21 130 deAlktLea..kkeeafaalvaelrGDilvaqgkldeAraaYqaA 172
                  eA ++ e+  ++++++aa +  l G+il++  +ld+Ar+ Yq A
  KOO21060.1  97 PEAQQLCEQaiAHKDGYAA-AHHLLGNILSSLQQLDDARTQYQLA 140
                 7999988662246677766.57899******************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (473 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       710  (0.0396006); expected 358.6 (0.02)
Passed bias filter:                      460  (0.0256568); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                        15  (0.000836633); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              14  [number of targets reported over threshold]
# CPU time: 0.58u 0.26s 00:00:00.84 Elapsed: 00:00:00.45
# Mc/sec: 3148.16
//
Query:       KOO21061.1  [L=261]
Description: hypothetical protein Ctob_002655 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (261 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       553  (0.0308439); expected 358.6 (0.02)
Passed bias filter:                      346  (0.0192983); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.41u 0.26s 00:00:00.67 Elapsed: 00:00:00.42
# Mc/sec: 1872.24
//
Query:       KOO21062.1  [L=464]
Description: mitochondrial-processing peptidase subunit beta [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      1e-53  181.3   0.3    1.6e-53  180.7   0.3    1.3  1  Peptidase_M16    Insulinase (Peptidase family M16)
    7.7e-29  101.0   0.0    7.7e-27   94.5   0.0    2.2  2  Peptidase_M16_C  Peptidase M16 inactive domain
  ------ inclusion threshold ------
      0.015   14.4   0.1      0.028   13.6   0.1    1.4  1  M16C_assoc       Peptidase M16C associated


Domain annotation for each model (and alignments):
>> Peptidase_M16  Insulinase (Peptidase family M16)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  180.7   0.3   2.7e-57   1.6e-53       1     149 []      37     184 ..      37     184 .. 0.99

  Alignments for each domain:
  == domain 1  score: 180.7 bits;  conditional E-value: 2.7e-57
                    EEEEEE-TSSSEEEEEEEES-SGGGSCTTTTTHHHHHHHHTTSBBSSSCHHHHHHHHHHTTCEEEEEEESSEEEEEEEEEGGGHHHHHHHHHHHHH CS
  Peptidase_M16   1 rvalesdppaktsavglvvdaGSryepkdlnGlAHllehmafkgTkkypsnklaeeleklGgslnAttsrentvYyvevlskdlekaldvladvfk 96 
                    rva+es+    t++vg+++d+GSrye++++nG+AH+lehmafkgTkk+++ +l+ e+e++G++lnA+tsre+tvYy++vl++d++ka+++l+d+++
     KOO21062.1  37 RVASEST-GGATATVGVWIDTGSRYETDANNGVAHFLEHMAFKGTKKRSQLALEVEVENMGAQLNAYTSREQTVYYAKVLKEDVPKAVELLSDILT 131
                    6899999.9*************************************************************************************** PP

                    SBTTSHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHTTTSGGGSHSS-TH CS
  Peptidase_M16  97 aplleesevererkvvekeveavdaepekvveenlhaaayrekalgrsllgpe 149
                    +++++  +verer+v+++e+e+v++  e+v++++lh+ ay  ++l+r++lgpe
     KOO21062.1 132 NSTFSAAAVERERDVILREMEEVESMTEEVIFDMLHEVAYVGTPLARTILGPE 184
                    **************************************************995 PP

>> Peptidase_M16_C  Peptidase M16 inactive domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.5   0.0    0.0052        31      91     163 ..      61     130 ..      14     146 .. 0.73
   2 !   94.5   0.0   1.3e-30   7.7e-27       2     183 .]     190     378 ..     189     378 .. 0.94

  Alignments for each domain:
  == domain 1  score: 4.5 bits;  conditional E-value: 0.0052
                      CTHTTHHHHHHHHHHHHSS..TTSHHHHHHHTTTTSESEEEEEEEEESSCEEEEEEEEEECTTHHHHHHHHHHHH CS
  Peptidase_M16_C  91 endeddlalavlntlLggg..mesrLytnlrekeglaysvsafndsyrdsglfgisatadpenveevvevilkel 163
                      e+d ++ + + l+++   g    s L  ++      +++ +a ++ y+    ++ +a++ +e+v ++ve++ + l
       KOO21062.1  61 ETDANNGVAHFLEHMAFKGtkKRSQLALEVE-----VENMGAQLNAYTSREQTVYYAKVLKEDVPKAVELLSDIL 130
                      6677777777777777777566677777777.....99*****999********************999886665 PP

  == domain 2  score: 94.5 bits;  conditional E-value: 1.3e-30
                      H-HHHHHHHHHHHSSGGGEEEEEEESS-HHHHHHHHHHHHTTSTHHSHCSGSCTSSSSSGGGSSEEEEEEEESSSSSEEEEEEEEEECTCTHTT CS
  Peptidase_M16_C   2 ltredlkefykkfYrpenmvlaivGdvdheelvkliekyfgdlkaskappakptgepltpatlkkppvvlkkldeeqahlslafegpskended 95 
                      ++++d+k+++ ++Y++ +mv+a+ G vdh+elvkl  ++fg+++  +  pa ++ e  tp  +++++v+  ++d +  h++lafeg+ + +d+d
       KOO21062.1 190 ISADDIKAYIATHYTAPRMVVAASGAVDHDELVKLSGDFFGKVPTEA--PAGYAIEH-TPSLFSGGDVRDYNDDMNVGHFALAFEGLKW-TDPD 279
                      899*****************************************986..66666554.559****************************.**** PP

                      HHHHHHHHHHHHSS.........TTSHHHHHHHTTTTSESEEEEEEEEESSCEEEEEEEEEECT...THHHHHHHHHHHHHHHHHHTS-HHHHH CS
  Peptidase_M16_C  96 dlalavlntlLggg.........mesrLytnlrekeglaysvsafndsyrdsglfgisatadpe...nveevvevilkelrklkkeglteeele 177
                      ++ l++ + l+g            + +L ++l      ++ ++ f + y+d+glfg+++t++      v+++   i +el +l++    +e+l+
       KOO21062.1 280 IFTLMLTQSLIGTFdakkggsafSSAKLASELSKLDCGVELFQPFCTCYNDTGLFGVYFTSNMSkkeSVDDLFSTIQEELVALTTG-TADEDLQ 372
                      *********************************66666**********************99888889*****************9.9****** PP

                      HHHHHH CS
  Peptidase_M16_C 178 raknql 183
                       aknql
       KOO21062.1 373 MAKNQL 378
                      ****98 PP

>> M16C_assoc  Peptidase M16C associated
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.1   4.6e-06     0.028     160     210 ..     103     155 ..      86     170 .. 0.81

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 4.6e-06
  M16C_assoc 160 kyeegfvlsgkaLdrnvekmfeLlreilletkfdd..kerlkelvkesksrle 210
                 + +e+ v  +k+L++ v+k++eLl++il+++ f+    er ++++ ++ +++e
  KOO21062.1 103 TSREQTVYYAKVLKEDVPKAVELLSDILTNSTFSAaaVERERDVILREMEEVE 155
                 456788999************************98787777777777766665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (464 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       605  (0.0337442); expected 358.6 (0.02)
Passed bias filter:                      493  (0.0274974); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.55u 0.26s 00:00:00.81 Elapsed: 00:00:00.44
# Mc/sec: 3181.31
//
Query:       KOO21063.1  [L=238]
Description: vesicle transport v-snare 13-like protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    4.1e-14   52.6   0.6    4.1e-14   52.6   0.6    1.9  2  V-SNARE_C       Snare region anchored in the vesicle membrane
    1.6e-11   44.4   3.6      3e-11   43.5   0.2    2.5  3  V-SNARE         Vesicle transport v-SNARE protein N-terminus
    9.4e-05   22.3   0.1    0.00023   21.0   0.1    1.6  1  Sec20           Sec20
    0.00062   19.2   1.9    0.00085   18.8   1.9    1.3  1  DUF4407         Domain of unknown function (DUF4407)
     0.0036   16.5   0.0     0.0053   15.9   0.0    1.2  1  Effector_1      Effector from type III secretion system
  ------ inclusion threshold ------
       0.02   14.7   0.1      0.052   13.4   0.1    1.7  1  Pox_A_type_inc  Viral A-type inclusion protein repeat
      0.046   13.9   2.3        7.6    6.8   0.1    2.4  2  TMF_TATA_bd     TATA element modulatory factor 1 TATA binding
      0.049   14.0   2.6       0.56   10.6   0.3    2.3  2  Uso1_p115_C     Uso1 / p115 like vesicle tethering protein, C
      0.055   14.1   0.5      0.055   14.1   0.5    2.2  2  GTP-bdg_M       GTP-binding GTPase Middle Region
       0.11   12.8   0.3       0.38   11.0   0.1    1.9  2  DUF5082         Domain of unknown function (DUF5082)
       0.11   12.3   1.3       0.17   11.7   0.1    1.9  2  DivIC           Septum formation initiator
       0.14   12.2   6.6        1.3    9.1   1.5    2.8  2  TPR_MLP1_2      TPR/MLP1/MLP2-like protein
       0.17   10.6   2.1        0.3    9.8   0.0    2.0  2  Tektin          Tektin family
       0.34   10.4   6.7        1.3    8.5   1.6    2.2  2  MscS_porin      Mechanosensitive ion channel porin domain
        1.2    9.1   4.7         37    4.4   0.1    3.3  3  SNARE           SNARE domain
        6.2    7.0   8.2       0.39   10.9   1.7    2.3  2  HR1             Hr1 repeat


Domain annotation for each model (and alignments):
>> V-SNARE_C  Snare region anchored in the vesicle membrane C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.1       2.1   2.3e+03      30      50 ..      73      93 ..      66      94 .. 0.80
   2 !   52.6   0.6   3.7e-17   4.1e-14       1      65 [.     128     192 ..     128     193 .. 0.97

  Alignments for each domain:
  == domain 1  score: -1.1 bits;  conditional E-value: 2.1
   V-SNARE_C 30 dLhsQretLkrarsklhnvan 50
                +L+s r+ ++  +++++++ +
  KOO21063.1 73 QLRSYRDEISALKTRIKDLKS 93
                677779999999999998876 PP

  == domain 2  score: 52.6 bits;  conditional E-value: 3.7e-17
   V-SNARE_C   1 erllresdrlknShrivdetisiGaailedLhsQretLkrarsklhnvanrlgksnsiLrsikrR 65 
                 +r  +++d+lk++h ++ ++++ + ail+dL++QretL +a+  l+ +a+ l  s+++L  + rR
  KOO21063.1 128 DRMSKATDKLKQAHAVTLDMEQTANAILGDLGKQRETLMHAQGSLRYAADGLEGSRKLLAQMGRR 192
                 57889***********************************************************9 PP

>> V-SNARE  Vesicle transport v-SNARE protein N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.5   0.2   2.6e-14     3e-11       2      78 ..      12      89 ..      11      90 .. 0.95
   2 ?    1.1   0.2      0.47   5.2e+02      22      51 ..     125     154 ..     110     180 .. 0.76
   3 ?   -1.9   0.0       4.1   4.6e+03      31      45 ..     176     190 ..     159     193 .. 0.77

  Alignments for each domain:
  == domain 1  score: 43.5 bits;  conditional E-value: 2.6e-14
     V-SNARE  2 kellaeiksklarlsslag.eerkaalreiekkldeaeelldqMelEvrnlpsserasykaklreykselkklkkelk 78
                + +++ ++++la +s +++ ++r+ al+ +e++ +  +++++ MelE r+l+ ++r++++a+lr+y+ e+  lk+ +k
  KOO21063.1 12 RGHVQAAEERLAHASRSSSpDDRRTALSGAERAAEAGKDVVQLMELEGRSLSGAARSKLQAQLRSYRDEISALKTRIK 89
                66788999*******999999*****************************************************9887 PP

  == domain 2  score: 1.1 bits;  conditional E-value: 0.47
     V-SNARE  22 erkaalreiekkldeaeelldqMelEvrnl 51 
                   +  ++++  kl++a  +   Me  ++ +
  KOO21063.1 125 ANNDRMSKATDKLKQAHAVTLDMEQTANAI 154
                 567888999999999999988888888877 PP

  == domain 3  score: -1.9 bits;  conditional E-value: 4.1
     V-SNARE  31 ekkldeaeelldqMe 45 
                    l+  ++ll qM 
  KOO21063.1 176 ADGLEGSRKLLAQMG 190
                 556777888888885 PP

>> Sec20  Sec20
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.0   0.1     2e-07   0.00023       4      84 ..     131     211 ..     128     216 .. 0.90

  Alignments for each domain:
  == domain 1  score: 21.0 bits;  conditional E-value: 2e-07
       Sec20   4 kqiTeslraisqllsqevqqSeenleeldastkslekleeeykqvedvlsrskklvkklerrdktdkllvflalglflacv 84 
                 ++ T++l++ +++  +  q  +  l +l ++ ++l +++  +   +d l+ s+kl+ ++ rr   +k+ + + +gl++ + 
  KOO21063.1 131 SKATDKLKQAHAVTLDMEQTANAILGDLGKQRETLMHAQGSLRYAADGLEGSRKLLAQMGRRAAMNKMTLWIVIGLLISML 211
                 56789999999888877777778899***************************************************9765 PP

>> DUF4407  Domain of unknown function (DUF4407)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.8   1.9   7.5e-07   0.00085     130     269 ..      55     214 ..       5     217 .. 0.61

  Alignments for each domain:
  == domain 1  score: 18.8 bits;  conditional E-value: 7.5e-07
     DUF4407 130 a.......ltaelaeleaqiaalqaeidaaearldalraeaqkeldgtk.........gtgttgvaGkgpaake..................kkaqlda 194
                         + a  ++l+aq+++ + ei+a+++r+++l+ +a++  +            +              +                  ++++l++
  KOO21063.1  55 MelegrslSGAARSKLQAQLRSYRDEISALKTRIKDLKSTARSPDHCREencaggdsyS--------------NpspgersrllanndrmskATDKLKQ 139
                 15556665667889999***********************9987765445555543330..............33344344433322222225555555 PP

     DUF4407 195 aqaelaelkakldatarlaalraelaeleaerakeraasqaaaaaddGllarl...ealdrltkedatallarlllfl 269
                 a a   +++++  a+a l +l +++++l  ++ + r a +   ++++ lla++    a++++t    + ll+++ll+l
  KOO21063.1 140 AHAVTLDMEQT--ANAILGDLGKQRETLMHAQGSLRYAADG-LEGSRKLLAQMgrrAAMNKMTLWIVIGLLISMLLLL 214
                 55555555555..7777777777777777777766665554.666666666442224566665333344444444433 PP

>> Effector_1  Effector from type III secretion system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.0   4.7e-06    0.0053     177     260 ..       8      97 ..       3     115 .. 0.84

  Alignments for each domain:
  == domain 1  score: 15.9 bits;  conditional E-value: 4.7e-06
  Effector_1 177 eneFagsieeakdklakEkeqv.....rkdlksaekAkekvkellkrveadk.kltteqkaklkdelngYadeleaiveqLaelkvllrk 260
                 e eF g ++ a+++la+    +     r  l  ae+A e +k++++ +e +  +l+ + + kl+++l +Y de+ a+   ++ lk++ r+
  KOO21063.1   8 EREFRGHVQAAEERLAHASRSSspddrRTALSGAERAAEAGKDVVQLMELEGrSLSGAARSKLQAQLRSYRDEISALKTRIKDLKSTARS 97 
                 6789999999999999876544222226789*****************98866******************************9998765 PP

>> Pox_A_type_inc  Viral A-type inclusion protein repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.1   4.6e-05     0.052       2      15 ..      80      93 ..      79      94 .. 0.94

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 4.6e-05
  Pox_A_type_inc  2 EmsrlRsRIsDLEr 15
                    E+s+l++RI DL++
      KOO21063.1 80 EISALKTRIKDLKS 93
                    9***********97 PP

>> TMF_TATA_bd  TATA element modulatory factor 1 TATA binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.5   0.2    0.0085       9.5      15      40 ..      68      93 ..      55     104 .. 0.81
   2 ?    6.8   0.1    0.0068       7.6      50      93 ..     121     164 ..     116     169 .. 0.92

  Alignments for each domain:
  == domain 1  score: 6.5 bits;  conditional E-value: 0.0085
  TMF_TATA_bd 15 erlsseirrlEgElaslkeelerlea 40
                 ++l++++r+   E+++lk++++ l++
   KOO21063.1 68 SKLQAQLRSYRDEISALKTRIKDLKS 93
                 78999999999999999999988875 PP

  == domain 2  score: 6.8 bits;  conditional E-value: 0.0068
  TMF_TATA_bd  50 vklmkeneelkelkkeleelekeleelqeryetlLellGeksEe 93 
                   +l+++n++++++ ++l++  +   ++++  +++L  lG++ E 
   KOO21063.1 121 SRLLANNDRMSKATDKLKQAHAVTLDMEQTANAILGDLGKQRET 164
                  68999***********************************9997 PP

>> Uso1_p115_C  Uso1 / p115 like vesicle tethering protein, C terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.3    0.0005      0.56       4      69 ..      39      96 ..      36     106 .. 0.87
   2 ?    3.4   0.1     0.083        93      26      72 ..     129     169 ..     113     188 .. 0.64

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.0005
  Uso1_p115_C  4 seleseaaslkdeneklkaelqslskalesleqkeakkaaesqakeleaenkklekeleklraelk 69
                 s +e+ a+  kd+ + ++ e +sls a++s+ q+        q +++++e+++l+ ++++l+++++
   KOO21063.1 39 SGAERAAEAGKDVVQLMELEGRSLSGAARSKLQA--------QLRSYRDEISALKTRIKDLKSTAR 96
                 5678888999999999999999999999999999........99999*******999999998876 PP

  == domain 2  score: 3.4 bits;  conditional E-value: 0.083
  Uso1_p115_C  26 slskalesleqkeakkaaesqakeleaenkklekeleklraelkeek 72 
                   +ska+ +      +k+a+++  ++e+++++   +l k r++l  ++
   KOO21063.1 129 RMSKATDK------LKQAHAVTLDMEQTANAILGDLGKQRETLMHAQ 169
                  23333333......444466777777777777777777777666655 PP

>> GTP-bdg_M  GTP-binding GTPase Middle Region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   0.5     5e-05     0.055      34      72 ..      58      95 ..      34     102 .. 0.80
   2 ?   -2.8   0.1         9     1e+04      55      67 ..     127     139 ..     119     144 .. 0.66

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 5e-05
                ..X..XXXXXXXXXHHHHHHHHHHHHHHHHHHHHHHHHH CS
   GTP-bdg_M 34 gGgigtrGpGetkleldrrlireriaklkkeLekvkkkr 72
                +G  +++G+  +kl+ + r +r+ i+ lk++++++k++ 
  KOO21063.1 58 EG-RSLSGAARSKLQAQLRSYRDEISALKTRIKDLKSTA 95
                33.3589****************************9875 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 9
                 HHHHHHHHHHHHH CS
   GTP-bdg_M  55 reriaklkkeLek 67 
                 ++r++k   +L++
  KOO21063.1 127 NDRMSKATDKLKQ 139
                 4666666666665 PP

>> DUF5082  Domain of unknown function (DUF5082)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.1   0.00034      0.38       5      33 ..      67      96 ..      64     110 .. 0.86
   2 ?   -1.6   0.0       2.7     3e+03      88     107 ..     149     168 ..     121     181 .. 0.49

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00034
     DUF5082  5 isklqaqiaelrseiaaleekIerLk.eak 33
                +sklqaq  ++r ei+al   I+ Lk +a+
  KOO21063.1 67 RSKLQAQLRSYRDEISALKTRIKDLKsTAR 96
                89************************4444 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 2.7
     DUF5082  88 elidaieeEIerLenqisea 107
                 ++  ai  +  + ++++++a
  KOO21063.1 149 QTANAILGDLGKQRETLMHA 168
                 33333333333333334444 PP

>> DivIC  Septum formation initiator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.1   0.00015      0.17      27      52 ..      68      93 ..      65     103 .. 0.85
   2 ?   -2.2   0.1       3.2   3.6e+03      30      45 ..     124     139 ..     119     150 .. 0.60

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.00015
                HHHHHHHHHHHHHHHHHHHHHCC-XX CS
       DivIC 27 aalqaelaklkaeneeLeaevkdLks 52
                 +lqa+l + ++e+ +L+ ++kdLks
  KOO21063.1 68 SKLQAQLRSYRDEISALKTRIKDLKS 93
                6899********************75 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 3.2
                 HHHHHHHHHHHHHHHH CS
       DivIC  30 qaelaklkaeneeLea 45 
                  a+++++++  ++L++
  KOO21063.1 124 LANNDRMSKATDKLKQ 139
                 4455555555555554 PP

>> TPR_MLP1_2  TPR/MLP1/MLP2-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.1   1.5    0.0011       1.3      89     117 ..      65      93 ..       2      96 .. 0.86
   2 ?    4.6   0.3     0.028        31       4      43 ..     131     170 ..     128     176 .. 0.90

  Alignments for each domain:
  == domain 1  score: 9.1 bits;  conditional E-value: 0.0011
  TPR_MLP1_2  89 eseesweeqkeelekelselekriedlne 117
                 +++++++ q  ++++e+s l++ri+dl++
  KOO21063.1  65 AARSKLQAQLRSYRDEISALKTRIKDLKS 93 
                 678999999*****************986 PP

  == domain 2  score: 4.6 bits;  conditional E-value: 0.028
  TPR_MLP1_2   4 ksleeeikslkeekeeaeaklqklqedlekqaeiakeaqq 43 
                 +++++++k++ +   + e++++++  dl kq+e + +aq 
  KOO21063.1 131 SKATDKLKQAHAVTLDMEQTANAILGDLGKQRETLMHAQG 170
                 678899999*************************999995 PP

>> Tektin  Tektin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   0.0   0.00027       0.3     258     289 ..      65      96 ..       2     100 .. 0.88
   2 ?    0.1   0.6      0.24   2.7e+02     333     368 ..     130     165 ..     122     169 .. 0.64

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.00027
      Tektin 258 daknkleeqlkkvleeiaeleknieeLekair 289
                  a++kl+ ql+  ++ei++l++ i++L+++ r
  KOO21063.1  65 AARSKLQAQLRSYRDEISALKTRIKDLKSTAR 96 
                 699************************98765 PP

  == domain 2  score: 0.1 bits;  conditional E-value: 0.24
      Tektin 333 ieaLkeklaeaeaslkaLertrleleediavKansl 368
                 +++  +kl++a+a   ++e+t +++  d+   +++l
  KOO21063.1 130 MSKATDKLKQAHAVTLDMEQTANAILGDLGKQRETL 165
                 444456677777777777777777777766666666 PP

>> MscS_porin  Mechanosensitive ion channel porin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.5   1.6    0.0012       1.3     110     170 ..      26      86 ..      14      93 .. 0.86
   2 ?    4.5   0.3      0.02        22      80     128 ..     144     192 ..     116     198 .. 0.75

  Alignments for each domain:
  == domain 1  score: 8.5 bits;  conditional E-value: 0.0012
  MscS_porin 110 elqtrperaqqqltearqrlqeirnrLnstaaagealsqaqrtalqaelaaleaqieeleq 170
                 + +++p+  +++l+ a ++ ++  +  +  + +g  ls a r +lqa+l +++++i+ l++
  KOO21063.1  26 SRSSSPDDRRTALSGAERAAEAGKDVVQLMELEGRSLSGAARSKLQAQLRSYRDEISALKT 86 
                 668999999**********9999998888888999*********************99986 PP

  == domain 2  score: 4.5 bits;  conditional E-value: 0.02
  MscS_porin  80 leeLeqrllqtssqlqelqeqlaqlnsqlvelqtrperaqqqltearqr 128
                 + + eq  ++ + +l +++e+l  ++ +l+ + + +e  ++ l+++ +r
  KOO21063.1 144 TLDMEQTANAILGDLGKQRETLMHAQGSLRYAADGLEGSRKLLAQMGRR 192
                 4467899999999999999999999999999999999988888887776 PP

>> SNARE  SNARE domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.0   0.1     0.089     1e+02      16      31 ..      14      29 ..      11      30 .. 0.89
   2 ?    1.6   0.1      0.26   2.9e+02      15      27 ..     128     140 ..     127     142 .. 0.87
   3 ?    4.4   0.1     0.033        37      24      52 ..     186     214 ..     175     216 .. 0.53

  Alignments for each domain:
  == domain 1  score: 3.0 bits;  conditional E-value: 0.089
                HHHHHHHHHHHHHHHH CS
       SNARE 16 nveraqkeLkkavkyq 31
                +v++a ++L++a++++
  KOO21063.1 14 HVQAAEERLAHASRSS 29
                89***********987 PP

  == domain 2  score: 1.6 bits;  conditional E-value: 0.26
                 HHHHHHHHHHHHH CS
       SNARE  15 snveraqkeLkka 27 
                 +++++a+++Lk+a
  KOO21063.1 128 DRMSKATDKLKQA 140
                 8999999999998 PP

  == domain 3  score: 4.4 bits;  conditional E-value: 0.033
                 HHHHHHHHCTXXXXXXXXXXXXXXXXXXX CS
       SNARE  24 LkkavkyqksnRklkciillilviillvv 52 
                 L+++ +++  n + ++i +++l+  ll++
  KOO21063.1 186 LAQMGRRAAMNKMTLWIVIGLLISMLLLL 214
                 55555555555555555555555444443 PP

>> HR1  Hr1 repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   1.7   0.00035      0.39      22      63 ..      51      93 ..      38      98 .. 0.83
   2 ?   -1.1   0.5       1.9   2.1e+03      36      36 ..     164     164 ..     122     198 .. 0.56

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00035
         HR1 22 llralesk.ktqnkkvrqeaeselsesnskielLreqLeelqa 63
                +++++e +  + +  +r++ +++l++ + +i+ L+ ++++l++
  KOO21063.1 51 VVQLMELEgRSLSGAARSKLQAQLRSYRDEISALKTRIKDLKS 93
                5666665667788889*************************97 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 1.9
         HR1  36 v 36 
                  
  KOO21063.1 164 T 164
                 1 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (238 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1184  (0.0660383); expected 358.6 (0.02)
Passed bias filter:                      865  (0.0482459); expected 358.6 (0.02)
Passed Vit filter:                        95  (0.00529868); expected 17.9 (0.001)
Passed Fwd filter:                        17  (0.000948185); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              16  [number of targets reported over threshold]
# CPU time: 0.54u 0.28s 00:00:00.82 Elapsed: 00:00:00.43
# Mc/sec: 1667.60
//
Query:       KOO21064.1  [L=348]
Description: pseudouridylate synthase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.9e-13   49.8   0.0    5.7e-13   49.2   0.0    1.3  1  PseudoU_synth_2  RNA pseudouridylate synthase
      1e-08   34.7   0.4    3.1e-08   33.2   0.4    1.9  1  S4               S4 domain
  ------ inclusion threshold ------
      0.077   12.8   0.1       0.16   11.8   0.1    1.6  1  S4_2             S4 domain
       0.13   13.0   0.0       0.34   11.6   0.0    1.7  1  ThiS             ThiS family


Domain annotation for each model (and alignments):
>> PseudoU_synth_2  RNA pseudouridylate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.2   0.0   1.3e-16   5.7e-13       5     160 .]     122     265 ..     118     265 .. 0.85

  Alignments for each domain:
  == domain 1  score: 49.2 bits;  conditional E-value: 1.3e-16
  PseudoU_synth_2   5 vnKPagvpvqpeakdgsekekettatssraeeekkelklvhRLDkatsGllllAksseaanklakafeerkvrKkYlalvfgapeeeegaikkk 98 
                      + K  gv+++ +      + +   ++ ++ ++ ++++++++RLD +++Gl+ll+ ++ ++n l +  ++ + +K+Y++ ++      + a++++
       KOO21064.1 122 MWKRRGVVCTTDQ----RQPNNIIDALGPVPGVTDRIYPIGRLDADSTGLILLTSDGGIVNGLLR--SSARKSKEYIVSTD------TRATDAQ 203
                      5688888888888....6666667777777899********************************..888899*******6......7777888 PP

  PseudoU_synth_2  99 iskd.....tekqegarrkaeeldgkkavtylkvlksgsseksakvslveleletGrkhQiRvhlaa 160
                      i ++     ++    +  +a+ l++  + ++++ ++ g     ++   ++ +l++Gr++QiR++++a
       KOO21064.1 204 IARLargvtITTVAQRDGQAKPLTAPTKPCVVERIATG-----HDECRLRFVLQEGRNRQIRRMCEA 265
                      88776666667777777778888999999999999999.....9999******************86 PP

>> S4  S4 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.2   0.4   6.9e-12   3.1e-08      14      47 ..      61      93 ..      51      94 .. 0.93

  Alignments for each domain:
  == domain 1  score: 33.2 bits;  conditional E-value: 6.9e-12
                SSHHHHHHHHHTTTEEETTEEE--TT-EE-TTCE CS
          S4 14 ssrreArqlIehGrVlVNGkvvkdpsyrVkpgDv 47
                 srr+A ql+ +GrV+VNG +v+ +++r++ gD+
  KOO21064.1 61 HSRRQADQLVADGRVQVNGAIVD-AGTRLTRGDI 93
                58*********************.*********8 PP

>> S4_2  S4 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.1   3.7e-05      0.16      25      60 ..      65      99 ..      53     102 .. 0.85

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 3.7e-05
        S4_2 25 eaKafiaegeVkvNGevetrRgkKlraGdvVeidge 60
                +a +++a+g V+vNG++ +  g +l +Gd++++dg 
  KOO21064.1 65 QADQLVADGRVQVNGAIVDA-GTRLTRGDILSLDGA 99
                78899***********9986.899******999986 PP

>> ThiS  ThiS family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   7.5e-05      0.34      14      69 ..      43      95 ..      35      96 .. 0.89

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 7.5e-05
                EEEEESSTSBHHHHHHHHHHHTCHHGTTTTEEEEETTEEEGCCTTTSB--TTCEEE CS
        ThiS 14 eelelaegstvaelleaLgerypelalerrvavavNgeivprlwldtelkdgDeva 69
                + ++++eg  v  +l+a   r ++ +l +  +v vNg iv+     t+l  gD ++
  KOO21064.1 43 RAELEPEGVRVNKALRATHSRRQADQLVADGRVQVNGAIVDA---GTRLTRGDILS 95
                567899*************9999999889*************...********876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (348 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       351  (0.0195772); expected 358.6 (0.02)
Passed bias filter:                      276  (0.0153941); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.43u 0.23s 00:00:00.66 Elapsed: 00:00:00.38
# Mc/sec: 2749.85
//
Query:       KOO21065.1  [L=130]
Description: hypothetical protein Ctob_002653 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (130 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       332  (0.0185175); expected 358.6 (0.02)
Passed bias filter:                      302  (0.0168442); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.39u 0.24s 00:00:00.63 Elapsed: 00:00:00.42
# Mc/sec: 932.56
//
Query:       KOO21066.1  [L=798]
Description: agc ndr protein kinase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.7e-56  191.5   0.0    4.9e-38  131.0   0.0    2.1  2  Pkinase        Protein kinase domain
    1.7e-29  102.9   0.0    3.2e-24   85.6   0.0    2.2  2  Pkinase_Tyr    Protein tyrosine kinase
      3e-05   24.1   0.2      0.012   15.5   0.1    2.6  2  APH            Phosphotransferase enzyme family
     0.0011   18.0   0.0     0.0016   17.4   0.0    1.1  1  Haspin_kinase  Haspin like kinase domain
     0.0038   17.4   0.0        0.3   11.2   0.0    2.4  2  ABC1           ABC1 family
     0.0046   16.6   0.0     0.0089   15.6   0.0    1.4  1  RIO1           RIO1 family
  ------ inclusion threshold ------
      0.019   14.3   0.3        3.6    6.8   0.0    2.8  3  Kinase-like    Kinase-like


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  131.0   0.0   1.9e-41   4.9e-38       3     146 ..     108     255 ..     106     266 .. 0.93
   2 !   58.5   0.0   2.5e-19   6.5e-16     147     264 .]     333     456 ..     329     456 .. 0.83

  Alignments for each domain:
  == domain 1  score: 131.0 bits;  conditional E-value: 1.9e-41
                 EEEEEEEESSEEEEEEEETTTTEEEEEEEEECHCHCHHHH...HHHHHHHHHHHHHSCTTB--EEEEEEESSEEEEEEE--TTEBHHHHHHHHSS--HH CS
     Pkinase   3 kleklGeGsfGkVykaveketgkivAvKkikkekakkkke...kkvlrEikilkklkhpnivrlyevfeekdelylvleyveggeladllerkgslsee 98 
                  ++ + +G+fG+Vy a++k+tg+ +AvK+ +k+ a  +     k++l E  il + +hp++v+l+++f+++++lylv+e++ gg+l +ll+r g l+e+
  KOO21066.1 108 IIRPISKGAFGRVYLARKKRTGDFFAVKVQRKDLALARGGdnaKRILGERDILIEADHPFVVKLFYSFQSQHNLYLVMEFLGGGDLRTLLKRVGRLTEQ 206
                 5778999*************************988766555679******************************************************* PP

                 HHHHHHHHHHHHHHHHH.HTTEE-SS-SGGGEEEETTTEEEE-SGTTSE CS
     Pkinase  99 eakkiakqilegleylH.skgiiHrDlKpeNiLidekgelKitDFGlak 146
                  a  ++++i+ gleylH + +++HrDlKpeN+L++++g+lK+tDFGl+ 
  KOO21066.1 207 LACVYLAEIVLGLEYLHnRLRVVHRDLKPENVLVSSTGHLKLTDFGLSG 255
                 *****************5567**************************96 PP

  == domain 2  score: 58.5 bits;  conditional E-value: 2.5e-19
                 ESSSSCS..BCTTTSCGGGS-HHHHTTSCBSHHHHHHHHHHHHHHHHHSS-STTTSSHHHHHHHHHHTHHHHHHHCT.SHH...HHHTTS-HHHHHHHH CS
     Pkinase 147 elesssk..ltsfvgtseYlAPEvlkeneyskkvDvWslGvilyelltgkppfsgekgkekvekeldqlekilkilg.etkeklpeaseiseeakdllk 242
                 +l+ + +    s+vg+++Y+APE+l+++++s +vD+W+lGvi +elltg  pf+g++  + + + +  +    k    ++    +  s+is++a +l++
  KOO21066.1 333 QLNDGPQarCYSIVGSPHYVAPEMLDGRGHSMPVDWWALGVIAFELLTGYLPFAGDSIAQVHDNVVSGHIDWPKGASaDSAAGEDGSSSISKSAHSLIS 431
                 5555555557899*****************************************888888777777776666665555556666777889********* PP

                 HHT-SSGCCSTT...HHHHHTSGGG CS
     Pkinase 243 kllkkdpkkRlt...aeellqhpyl 264
                 +ll+    +Rl+   a+e+ +h+++
  KOO21066.1 432 SLLTLPAVSRLGaggAAEVRAHRFF 456
                 ***********97778888888886 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   85.6   0.0   1.2e-27   3.2e-24       3     150 ..     108     254 ..     106     270 .. 0.93
   2 !   15.0   0.0   4.3e-06     0.011     169     221 ..     349     400 ..     335     411 .. 0.88

  Alignments for each domain:
  == domain 1  score: 85.6 bits;  conditional E-value: 1.2e-27
                  EEEEEEEESSEEEEEEEEETTTTSSEEEEEEEEESTTSSHHHHHHHHHHHHHHHTS-BTTB--EEEEEESSSSEEEEEE--TTEBHHHHHHHTCTTTS CS
  Pkinase_Tyr   3 lgkklGeGafGkVvegtlkgekekkevkVavKtlkeeateeekeelleeakimkklkhpnivkllgvctkeepllivteyvkgGdLlkfLrkkekekl 100
                  + + + +GafG+V+ ++ k++ +   vkV  K l      ++ +++l e +i+ + +hp +vkl     ++++l++v+e++ gGdL++ L++    +l
   KOO21066.1 108 IIRPISKGAFGRVYLARKKRTGDFFAVKVQRKDLALARGGDNAKRILGERDILIEADHPFVVKLFYSFQSQHNLYLVMEFLGGGDLRTLLKRV--GRL 203
                  568899*************88888899999999998999999*************************************************98..99* PP

                  BHHHHHHHHHHHHHHHHHHHHT.TEEEST-SGGGEEEEETTEEEE-STTTH CS
  Pkinase_Tyr 101 tlkdllsfalqvAkGmeyLesk.klvHrdlaarNvLlsenkvvkisDfGLa 150
                  t +  + + +++  G+eyL+++ ++vHrdl   NvL+s++ + k++DfGL+
   KOO21066.1 204 TEQLACVYLAEIVLGLEYLHNRlRVVHRDLKPENVLVSSTGHLKLTDFGLS 254
                  *999***************98847**************************8 PP

  == domain 2  score: 15.0 bits;  conditional E-value: 4.3e-06
                  GGGS-HHHHHHSEEEHHHHHHHHHHHHHHHHTTSSGTTTTSHHHHHHHHHHTT CS
  Pkinase_Tyr 169 vkWmapEslkekkftsksDvWsfGvllwEiftlgespypglkneevleklkeg 221
                   +++apE+l+ +  +   D W+ Gv+ +E++t g  p++g + ++v +++ +g
   KOO21066.1 349 PHYVAPEMLDGRGHSMPVDWWALGVIAFELLT-GYLPFAGDSIAQVHDNVVSG 400
                  579*****************************.**9*9998888887777555 PP

>> APH  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.4   0.0    0.0015       3.8       2     101 ..     109     203 ..     108     213 .. 0.73
   2 !   15.5   0.1   4.7e-06     0.012     145     199 ..     200     257 ..     195     299 .. 0.78

  Alignments for each domain:
  == domain 1  score: 7.4 bits;  conditional E-value: 0.0015
                 EEEE--.SSCEEEEEEETT.--EE.EEE.......E-TTS-HHHHHHHHHHHHHHHHTT-B--B-CTTBS-EEETTEEEEEEE----EE-SSHHHHHHH CS
         APH   2 vrelsggasnrtylvttpa.gryv.lrr.......npparaaeeirrevallrlLakagvpvPevlagdtddeeigllfalieyvpgrsllrklsaaql 91 
                 +r++s ga  r+yl   ++ g+++ +++       ++ +++a +i +e ++l   a++++ v ++++   + + +  l++++e+++g +l++       
  KOO21066.1 109 IRPISKGAFGRVYLARKKRtGDFFaVKVqrkdlalARGGDNAKRILGERDILIE-ADHPF-VVKLFY---SFQSQHNLYLVMEFLGGGDLRT------- 195
                 7999*************9988777644433444437777999999999999999.99988.779999...6666666678999999999988....... PP

                 HHHHHHHHHH CS
         APH  92 pellealgef 101
                   ll ++g++
  KOO21066.1 196 --LLKRVGRL 203
                 ..33333333 PP

  == domain 2  score: 15.5 bits;  conditional E-value: 4.7e-06
                 HHHHHHHHHHHHHHH--S.....SS-EEEE-SS-SGGGEEEC..TTEEEEE---TT-EEE CS
         APH 145 leeleeqvlaalaallpg.....elptvllHgDlhpgNllvdpddgrvtGviDfedaglg 199
                 + +l+eq++   +a+        + + +++H+Dl+p N+lv ++ g++  + Df+++gl+
  KOO21066.1 200 VGRLTEQLACVYLAEIVLgleylHNRLRVVHRDLKPENVLVSST-GHL-KLTDFGLSGLS 257
                 566667766666666655677778999***************55.444.48999888765 PP

>> Haspin_kinase  Haspin like kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.4   0.0   6.4e-07    0.0016     176     257 ..     173     257 ..     153     267 .. 0.73

  Alignments for each domain:
  == domain 1  score: 17.4 bits;  conditional E-value: 6.4e-07
  Haspin_kinase 176 pdfyseqqlflvlllkdkGtdLeev..klkswkqalsifw..qivkiLyvaEtkfeFEHRdLhldniLvdknlnvtlidlklsRle 257
                      f+s+++l+lv+++  +G dL ++  ++    + l   +  +iv  L    ++++  HRdL+ +n+Lv ++++  l d+ ls l+
     KOO21066.1 173 YSFQSQHNLYLVMEFL-GGGDLRTLlkRVGRLTEQLACVYlaEIVLGLEYLHNRLRVVHRDLKPENVLVSSTGHLKLTDFGLSGLS 257
                    4455566666666664.45677777664544444444333248999999*******************************999765 PP

>> ABC1  ABC1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.2   0.0   0.00012       0.3      17      48 ..     110     142 ..     103     150 .. 0.90
   2 ?    3.3   0.0     0.033        85      18      31 ..     384     397 ..     380     402 .. 0.85

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00012
        ABC1  17 ePiAaASiaqVhrAklk.sgeeVavKvqrpgvk 48 
                 +Pi  + ++ V+ A+ k +g+  avKvqr +++
  KOO21066.1 110 RPISKGAFGRVYLARKKrTGDFFAVKVQRKDLA 142
                 69999************99**********9987 PP

  == domain 2  score: 3.3 bits;  conditional E-value: 0.033
        ABC1  18 PiAaASiaqVhrAk 31 
                 P+A  SiaqVh  +
  KOO21066.1 384 PFAGDSIAQVHDNV 397
                 99*********865 PP

>> RIO1  RIO1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.0   3.5e-06    0.0089      82     149 ..     182     251 ..     175     254 .. 0.81

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 3.5e-06
                 EEEEE--EETTEEGGBHHHCG-.HHHHHHHH.HHHHHHHHHHHHTSTEEESS-STTSEEEETT.EEEE--G CS
        RIO1  82 vlvmefigedgvaapklkdvee.eeeaeely.eevleemrklykeaglvHaDLSeyNvlvded.kvviIDv 149
                  lvmef+g  g   + lk v + +e+++++y +e++  ++ l ++ ++vH DL   Nvlv++  ++ + D+
  KOO21066.1 182 YLVMEFLG-GGDLRTLLKRVGRlTEQLACVYlAEIVLGLEYLHNRLRVVHRDLKPENVLVSSTgHLKLTDF 251
                 59******.66666778888844777777763688889**********************98768888776 PP

>> Kinase-like  Kinase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.0      0.28   7.3e+02      19      45 ..     111     137 ..     108     140 .. 0.91
   2 ?    6.8   0.0    0.0014       3.6     157     189 ..     219     252 ..     176     283 .. 0.81
   3 ?    3.8   0.0     0.012        31     228     253 ..     363     388 ..     356     395 .. 0.89

  Alignments for each domain:
  == domain 1  score: -0.8 bits;  conditional E-value: 0.28
  Kinase-like  19 llkkgdrsvvfevkdqetgeplavkvf 45 
                  ++ kg ++ v++++ + tg+ +avkv 
   KOO21066.1 111 PISKGAFGRVYLARKKRTGDFFAVKVQ 137
                  799999*******************95 PP

  == domain 2  score: 6.8 bits;  conditional E-value: 0.0014
  Kinase-like 157 aanLqa.kglvhgkftvdnllldekgglmlggft 189
                    +L++ + +vh +++++n+l    g l+l++f+
   KOO21066.1 219 LEYLHNrLRVVHRDLKPENVLVSSTGHLKLTDFG 252
                  466765258***********************97 PP

  == domain 3  score: 3.8 bits;  conditional E-value: 0.012
  Kinase-like 228 thkldaWqlGlviyriwclklPltla 253
                  ++++d W+lG+ ++ +   +lP+  +
   KOO21066.1 363 SMPVDWWALGVIAFELLTGYLPFAGD 388
                  6789******************9865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (798 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       352  (0.019633); expected 358.6 (0.02)
Passed bias filter:                      317  (0.0176809); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.64u 0.30s 00:00:00.94 Elapsed: 00:00:00.46
# Mc/sec: 5236.18
//
Query:       KOO21067.1  [L=481]
Description: hypothetical protein Ctob_002660 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      4e-19   67.0   1.1    0.00044   20.1   0.0    5.9  5  LRR_6     Leucine Rich repeat
     0.0011   19.4   0.0        4.2    7.9   0.0    3.6  3  LRR_4     Leucine Rich repeats (2 copies)


Domain annotation for each model (and alignments):
>> LRR_6  Leucine Rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.3   0.0   6.9e-05      0.61       4      24 .]     288     308 ..     286     308 .. 0.93
   2 !   20.1   0.0     5e-08   0.00044       7      24 .]     319     336 ..     316     336 .. 0.95
   3 !   11.7   0.0   2.4e-05      0.22       5      24 .]     344     363 ..     340     363 .. 0.93
   4 ?    1.7   0.0     0.037   3.3e+02      14      23 ..     384     393 ..     379     394 .. 0.83
   5 !   16.2   0.1   8.3e-07    0.0075       2      24 .]     401     423 ..     400     423 .. 0.93

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 6.9e-05
       LRR_6   4 hLteLdLsgNdIgDeGaeaLa 24 
                 +L+   L+ N +gD+Ga+++a
  KOO21067.1 288 TLRQIYLTKNAVGDAGAISIA 308
                 899999*************98 PP

  == domain 2  score: 20.1 bits;  conditional E-value: 5e-08
       LRR_6   7 eLdLsgNdIgDeGaeaLa 24 
                 +L+Ls+N+IgD+G+ aLa
  KOO21067.1 319 TLHLSDNQIGDAGVAALA 336
                 7***************98 PP

  == domain 3  score: 11.7 bits;  conditional E-value: 2.4e-05
       LRR_6   5 LteLdLsgNdIgDeGaeaLa 24 
                 Lt+  L+ N +g++Ga+a+a
  KOO21067.1 344 LTTIVLTRNPFGNAGAKAIA 363
                 99****************98 PP

  == domain 4  score: 1.7 bits;  conditional E-value: 0.037
       LRR_6  14 dIgDeGaeaL 23 
                  I DeGa aL
  KOO21067.1 384 RIADEGAAAL 393
                 699*****99 PP

  == domain 5  score: 16.2 bits;  conditional E-value: 8.3e-07
       LRR_6   2 nthLteLdLsgNdIgDeGaeaLa 24 
                 ++ L  L L gN+IgDeG+ aLa
  KOO21067.1 401 CRQLNRLALHGNQIGDEGCRALA 423
                 78899****************98 PP

>> LRR_4  Leucine Rich repeats (2 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.9   0.0   0.00047       4.2       5      18 ..     319     332 ..     288     356 .. 0.58
   2 !    4.7   0.0    0.0047        42       2      38 ..     374     416 ..     373     420 .. 0.82
   3 ?    2.0   0.0     0.033     3e+02       2      15 ..     434     447 ..     433     451 .. 0.83

  Alignments for each domain:
  == domain 1  score: 7.9 bits;  conditional E-value: 0.00047
                 EEE--SS---E-S- CS
       LRR_4   5 vLdLsnNqltdipl 18 
                 +L+Ls+Nq+ d + 
  KOO21067.1 319 TLHLSDNQIGDAGV 332
                 56666666666555 PP

  == domain 2  score: 4.7 bits;  conditional E-value: 0.0047
                 S--EEE--SS---E-S-..HH.....H-TT--EEE-.-S----- CS
       LRR_4   2 nLevLdLsnNqltdipl..le.....klpnLkeLdLsgNnlitd 38 
                 +Le L L+ +++ d +   l+     ++ +L  L L+gN +i+d
  KOO21067.1 374 RLEWLFLNETRIADEGAaaLGralltGCRQLNRLALHGN-QIGD 416
                 79999********99998833555658999******888.8876 PP

  == domain 3  score: 2.0 bits;  conditional E-value: 0.033
                 S--EEE--SS---E CS
       LRR_4   2 nLevLdLsnNqltd 15 
                  Le+L+++nN  t+
  KOO21067.1 434 ALEFLYFQNNPFTE 447
                 6999****998775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (481 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       307  (0.0171231); expected 358.6 (0.02)
Passed bias filter:                      289  (0.0161191); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.49u 0.26s 00:00:00.75 Elapsed: 00:00:00.42
# Mc/sec: 3439.19
//
Query:       KOO21068.1  [L=422]
Description: hypothetical protein Ctob_002661 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    6.6e-06   25.9   2.3     0.0073   16.3   0.2    3.1  2  TPR_2           Tetratricopeptide repeat
    0.00041   20.4   0.2     0.0011   19.1   0.2    1.7  1  TPR_9           Tetratricopeptide repeat
  ------ inclusion threshold ------
      0.069   13.0   5.3        1.3    9.0   0.4    3.0  3  TPR_1           Tetratricopeptide repeat
       0.09   13.0   0.8          9    6.8   0.0    2.9  2  TPR_8           Tetratricopeptide repeat
        0.1   12.4   0.5       0.16   11.8   0.5    1.4  1  DUF5113         Domain of unknown function (DUF5113)
          1   10.1   8.4       0.12   13.1   2.6    2.4  2  TPR_16          Tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> TPR_2  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.2   0.2     0.001         3      17      34 .]     155     172 ..     142     172 .. 0.93
   2 !   16.3   0.2   2.5e-06    0.0073       1      34 []     173     206 ..     173     206 .. 0.95

  Alignments for each domain:
  == domain 1  score: 8.2 bits;  conditional E-value: 0.001
       TPR_2  17 yeeAleafekAleldPnn 34 
                 ye+Al+a ++Ale+ P++
  KOO21068.1 155 YEDALAAVNEALEIKPHH 172
                 9***************86 PP

  == domain 2  score: 16.3 bits;  conditional E-value: 2.5e-06
       TPR_2   1 aealynlGlayyklgdyeeAleafekAleldPnn 34 
                 a a++++ ++++kl  + eA+++ + A +++P++
  KOO21068.1 173 APAYFRRSQIHEKLEMWSEAVDDARNAYRYAPED 206
                 569*****************************86 PP

>> TPR_9  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.1   0.2   3.5e-07    0.0011      10      60 ..     154     204 ..     147     215 .. 0.88

  Alignments for each domain:
  == domain 1  score: 19.1 bits;  conditional E-value: 3.5e-07
       TPR_9  10 dweralavverllllaPddpeerrdRGlllaqlGclsaAladLeaylalap 60 
                  +e ala+v+  l ++P+++  ++ R +++++l+ +s+A++d   + + ap
  KOO21068.1 154 AYEDALAAVNEALEIKPHHAPAYFRRSQIHEKLEMWSEAVDDARNAYRYAP 204
                 5799*************************************9766666555 PP

>> TPR_1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.0   0.4   0.00043       1.3      17      34 .]     155     172 ..     137     172 .. 0.93
   2 ?    5.7   0.1    0.0046        14       1      33 [.     173     205 ..     173     206 .. 0.87
   3 ?   -3.6   0.1       4.1   1.2e+04      23      28 ..     254     259 ..     253     260 .. 0.79

  Alignments for each domain:
  == domain 1  score: 9.0 bits;  conditional E-value: 0.00043
                 HHHHHHHHHHHHHHSTTH CS
       TPR_1  17 ydeAleyyekALelnPnn 34 
                 y++Al++ ++ALe+ P++
  KOO21068.1 155 YEDALAAVNEALEIKPHH 172
                 9***************86 PP

  == domain 2  score: 5.7 bits;  conditional E-value: 0.0046
                 HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT CS
       TPR_1   1 akalynlGnayfklgkydeAleyyekALelnPn 33 
                 a a++++ +++ kl+++ eA+++ + A +  P+
  KOO21068.1 173 APAYFRRSQIHEKLEMWSEAVDDARNAYRYAPE 205
                 678999999**************9999777776 PP

  == domain 3  score: -3.6 bits;  conditional E-value: 4.1
                 HHHHHH CS
       TPR_1  23 yyekAL 28 
                 +y++AL
  KOO21068.1 254 AYKQAL 259
                 688887 PP

>> TPR_8  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.7   0.2     0.029        88      17      34 .]     155     172 ..     146     172 .. 0.92
   2 ?    6.8   0.0     0.003         9       1      34 []     173     206 ..     173     206 .. 0.93

  Alignments for each domain:
  == domain 1  score: 3.7 bits;  conditional E-value: 0.029
                 HHHHHHHHHHHHHHHHH. CS
       TPR_8  17 yeeAkeyyekaleldpdn 34 
                 ye A ++ ++ale++p +
  KOO21068.1 155 YEDALAAVNEALEIKPHH 172
                 899************975 PP

  == domain 2  score: 6.8 bits;  conditional E-value: 0.003
                 CCHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH. CS
       TPR_8   1 aeayynlgsiylklgdyeeAkeyyekaleldpdn 34 
                 a+ay++ ++i++kl+   eA+   + a +++p++
  KOO21068.1 173 APAYFRRSQIHEKLEMWSEAVDDARNAYRYAPED 206
                 79********************999999999975 PP

>> DUF5113  Domain of unknown function (DUF5113)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.5   5.4e-05      0.16      18     107 ..     149     241 ..     131     268 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 5.4e-05
     DUF5113  18 lnvegeyeeALeyldsaleylNahyekYakkkadtldklkmllegegeaaelkWlkdekfktdy....evildiReelavaylalkdkeaydYN 107
                    +  ye+AL+ +++ale+  +h   Y +++ +  +kl+m  e  ++a +    + e+fk d     e ++++R e++    a++   +  YN
  KOO21068.1 149 NLKNPAYEDALAAVNEALEIKPHHAPAYFRRS-QIHEKLEMWSEAVDDARNAYRYAPEDFKFDLwkhrEHMVQLRREASFFWTAVGFVADAPYN 241
                 344568*************************9.5999999999998888888777778999885444478999999999999999999999998 PP

>> TPR_16  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   2.6     4e-05      0.12      13      62 ..     155     201 ..     143     207 .. 0.81
   2 ?   -1.3   0.4       1.2   3.6e+03      39      59 ..     261     271 ..     252     281 .. 0.53

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 4e-05
      TPR_16  13 yddAaaaleaalkrdpssPdaaeAllllgdaalrqgrlaeAaalyraalr 62 
                 y+dA+aa ++al+     P +a A++ + +++ ++  + eA++  r a+r
  KOO21068.1 155 YEDALAAVNEALEIK---PHHAPAYFRRSQIHEKLEMWSEAVDDARNAYR 201
                 9**************...*****************888888855555554 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 1.2
      TPR_16  39 llgdaalrqgrlaeAaalyra 59 
                  l++          A+al ++
  KOO21068.1 261 VLAL----------ALALGAK 271
                 4444..........4444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (422 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       756  (0.0421663); expected 358.6 (0.02)
Passed bias filter:                      500  (0.0278878); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.53u 0.23s 00:00:00.76 Elapsed: 00:00:00.41
# Mc/sec: 3118.38
//
Query:       KOO21069.1  [L=285]
Description: hypothetical protein Ctob_000485 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (285 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       333  (0.0185733); expected 358.6 (0.02)
Passed bias filter:                      242  (0.0134977); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.42u 0.26s 00:00:00.68 Elapsed: 00:00:00.41
# Mc/sec: 2076.05
//
Query:       KOO21070.1  [L=116]
Description: hypothetical protein Ctob_000489 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (116 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       278  (0.0155056); expected 358.6 (0.02)
Passed bias filter:                      259  (0.0144459); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.24s 00:00:00.62 Elapsed: 00:00:00.40
# Mc/sec: 869.41
//
Query:       KOO21071.1  [L=238]
Description: aldo keto reductase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.3e-13   50.9   0.0    1.5e-13   50.6   0.0    1.0  1  Aldo_ket_red  Aldo/keto reductase family


Domain annotation for each model (and alignments):
>> Aldo_ket_red  Aldo/keto reductase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.6   0.0   8.2e-18   1.5e-13      33     193 ..      48     219 ..       9     231 .. 0.88

  Alignments for each domain:
  == domain 1  score: 50.6 bits;  conditional E-value: 8.2e-18
                   -....EEE--TT-TTTHHHHHHHHHHHH-TTTGGG-EEEEEE....--SSSTTSSSS-HHHHHHHHHHHHHHHT-S-EEEEEE-S--TTS-.HHHHH CS
  Aldo_ket_red  33 n....ffDtAevYgkgqseellGealkksrkkreeviiatKv....dlrdaeiksglskeniresleeslkrLgtdyvDllllHrpdpslpsieevl 121
                        ++DtA  Y  g+se+ +G +l ++       +iatK     + +++e   +++++  ++ le+sl +L    +Dl++ H+    ++  +e++
    KOO21071.1  48 DgaklMLDTASGY--GESEQRVGSWLTNNATLASRCVIATKFgetfNCSTGETTTCHTAAGAMTVLEASLLTLS-RPIDLFYSHITSQLTEAQAEAV 141
                   1444689******..*****************************9999**************************.7************999777777 PP

                   .......HHHHHHHHTTSEEEEEEES--HHHHHHH.HHTTT--EEEEE-B-BTT-HHHHTTHHHHHHHTT-EEEEBSTTG CS
  Aldo_ket_red 122 .......daleelvkeGkiraiGvSnfsveqleka.kkkkkvkivavqveynllreleeegllelckkkgvpliaysplg 193
                           al+  + eGk+  +G+S      ++ a +k +  ++++vq     +  ++e +l+  +++ g  +ia sp+ 
    KOO21071.1 142 laddglrHALVSAKAEGKVGMLGTSCSYPNVVRTAlRKGWLDELAVVQLPARTC--VAEPELIAELRAAGKLVIANSPVR 219
                   7999999*******************99*******66666667***********..9999999999999*******9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (238 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       325  (0.0181271); expected 358.6 (0.02)
Passed bias filter:                      269  (0.0150036); expected 358.6 (0.02)
Passed Vit filter:                         9  (0.00050198); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.26s 00:00:00.67 Elapsed: 00:00:00.41
# Mc/sec: 1727.80
//
Query:       KOO21072.1  [L=211]
Description: tetratricopeptide repeat protein 1-like protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    5.6e-18   63.9   0.0    1.4e-06   27.9   0.0    3.5  3  TPR_1          Tetratricopeptide repeat
    4.3e-14   51.4   0.6    1.5e-05   24.7   0.0    3.4  3  TPR_2          Tetratricopeptide repeat
    7.9e-06   26.1   0.4     0.0022   18.3   0.0    2.4  2  TPR_12         Tetratricopeptide repeat
    4.3e-05   23.6   5.2      0.024   14.8   2.6    2.2  2  TPR_9          Tetratricopeptide repeat
    9.4e-05   22.0   0.5       0.03   14.0   0.0    3.5  3  TPR_11         TPR repeat
    0.00016   22.2   6.0       0.59   11.1   0.0    3.2  3  TPR_14         Tetratricopeptide repeat
    0.00057   19.7   1.2      0.005   16.8   0.0    2.9  4  TPR_7          Tetratricopeptide repeat
     0.0074   16.9   7.4        1.2    9.9   0.2    2.5  2  TPR_16         Tetratricopeptide repeat
     0.0077   16.5   0.2          2    9.0   0.1    3.4  3  TPR_17         Tetratricopeptide repeat
     0.0081   16.3   0.0        9.6    6.7   0.0    3.5  3  TPR_8          Tetratricopeptide repeat
  ------ inclusion threshold ------
      0.016   14.5   0.9       0.64    9.2   1.0    2.3  2  TPR_15         Tetratricopeptide repeat
      0.025   15.2   0.2        7.2    7.5   0.2    2.8  2  TPR_6          Tetratricopeptide repeat
      0.039   13.5   0.5      0.049   13.2   0.5    1.1  1  Lant_dehydr_C  Lantibiotic biosynthesis dehydratase C-term
      0.084   13.0   1.7       0.51   10.5   0.0    2.8  3  MIT            MIT (microtubule interacting and transport) do
        1.4    8.3   8.0        1.4    8.3   4.5    2.1  2  CAP_N          Adenylate cyclase associated (CAP) N terminal


Domain annotation for each model (and alignments):
>> TPR_1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.9   0.0   1.1e-09   1.4e-06       1      30 [.      42      71 ..      42      74 .. 0.95
   2 !   16.0   0.0   6.7e-06    0.0081       4      34 .]      83     113 ..      80     113 .. 0.93
   3 !   16.2   0.0   5.5e-06    0.0066       2      34 .]     115     147 ..     114     147 .. 0.96

  Alignments for each domain:
  == domain 1  score: 27.9 bits;  conditional E-value: 1.1e-09
                HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH CS
       TPR_1  1 akalynlGnayfklgkydeAleyyekALel 30
                a+a++ +Gn++fk +++d A+++y  A+e+
  KOO21072.1 42 ARAHKERGNVHFKAQEWDAAIDCYTHAIEV 71
                89**************************98 PP

  == domain 2  score: 16.0 bits;  conditional E-value: 6.7e-06
                 HHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH CS
       TPR_1   4 lynlGnayfklgkydeAleyyekALelnPnn 34 
                 + n+++a+ k  +++  ++++  ALel+P++
  KOO21072.1  83 FANRAAAFAKIDEHEGVVDDCTAALELQPQY 113
                 78***************************86 PP

  == domain 3  score: 16.2 bits;  conditional E-value: 5.5e-06
                 HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH CS
       TPR_1   2 kalynlGnayfklgkydeAleyyekALelnPnn 34 
                 kal ++++a   l ++ eAle+ + A  l+P++
  KOO21072.1 115 KALVRRALAREALDQPTEALEDAKTAAALDPSD 147
                 7999***************************86 PP

>> TPR_2  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.7   0.0   1.3e-08   1.5e-05       1      32 [.      42      73 ..      42      75 .. 0.94
   2 ?    6.3   0.1      0.01        12       5      34 .]      84     113 ..      80     113 .. 0.91
   3 !   17.3   0.1     3e-06    0.0036       2      34 .]     115     147 ..     114     147 .. 0.95

  Alignments for each domain:
  == domain 1  score: 24.7 bits;  conditional E-value: 1.3e-08
       TPR_2  1 aealynlGlayyklgdyeeAleafekAleldP 32
                a+a+ ++G++++k+++++ A++++  A+e  P
  KOO21072.1 42 ARAHKERGNVHFKAQEWDAAIDCYTHAIEVMP 73
                789**************************998 PP

  == domain 2  score: 6.3 bits;  conditional E-value: 0.01
       TPR_2   5 ynlGlayyklgdyeeAleafekAleldPnn 34 
                  n++ a +k +++e  ++++ +Alel P++
  KOO21072.1  84 ANRAAAFAKIDEHEGVVDDCTAALELQPQY 113
                 68999***********************85 PP

  == domain 3  score: 17.3 bits;  conditional E-value: 3e-06
       TPR_2   2 ealynlGlayyklgdyeeAleafekAleldPnn 34 
                 +al +++la ++l+++ eAle+ + A +ldP +
  KOO21072.1 115 KALVRRALAREALDQPTEALEDAKTAAALDPSD 147
                 6899***************************86 PP

>> TPR_12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.3   0.0   1.8e-06    0.0022       3      62 ..      42      97 ..      40     112 .. 0.86
   2 ?    6.0   0.2     0.012        15       5      37 ..     116     145 ..     112     171 .. 0.75

  Alignments for each domain:
  == domain 1  score: 18.3 bits;  conditional E-value: 1.8e-06
      TPR_12  3 atalnnlaavlrrlgrydeAlellekaleiarrllGpdhpltattlrnLgrlyralgrye 62
                a+a+ ++++v+++++++d A++++ +a+e++   + pd p+ a    n + ++ + +++e
  KOO21072.1 42 ARAHKERGNVHFKAQEWDAAIDCYTHAIEVM---P-PDEPERAVFFANRAAAFAKIDEHE 97
                6778789***********************9...4.999999999999999998888776 PP

  == domain 2  score: 6.0 bits;  conditional E-value: 0.012
      TPR_12   5 alnnlaavlrrlgrydeAlellekaleiarrll 37 
                 al+++a++  +l + +eAle  ++a ++    +
  KOO21072.1 116 ALVRRALAREALDQPTEALEDAKTAAALD---P 145
                 7889999999999******9999999886...4 PP

>> TPR_9  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.4   0.1   0.00099       1.2      29      65 ..      42      79 ..      40      89 .. 0.86
   2 !   14.8   2.6     2e-05     0.024      13      70 ..      98     155 ..      85     158 .. 0.84

  Alignments for each domain:
  == domain 1  score: 9.4 bits;  conditional E-value: 0.00099
       TPR_9 29 peerrdRGlllaqlGclsaAladLeaylalap.dapda 65
                ++ + +RG ++++   + aA+++  +++++ p d p++
  KOO21072.1 42 ARAHKERGNVHFKAQEWDAAIDCYTHAIEVMPpDEPER 79
                678899**********************9998655554 PP

  == domain 2  score: 14.8 bits;  conditional E-value: 2e-05
       TPR_9  13 ralavverllllaPddpeerrdRGlllaqlGclsaAladLeaylalapdapdaeaira 70 
                      +   l l+P+    +  R+l+++ l+++ +Al+d  +++al+p++    a+ +
  KOO21072.1  98 GVVDDCTAALELQPQYTKALVRRALAREALDQPTEALEDAKTAAALDPSDKGLVAAVS 155
                 55666778899*************************************8876655555 PP

>> TPR_11  TPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.0   0.0   2.5e-05      0.03       1      25 [.      49      73 ..      49      93 .. 0.91
   2 ?    2.0   0.0      0.14   1.6e+02      19      38 ..     105     124 ..     104     128 .. 0.82
   3 ?    2.0   0.3      0.14   1.7e+02      11      27 ..     131     147 ..     126     148 .. 0.89

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 2.5e-05
      TPR_11  1 GdayyeqGkyeeAieaYkkAlkldP 25
                G++ ++ +++++Ai +Y  A++  P
  KOO21072.1 49 GNVHFKAQEWDAAIDCYTHAIEVMP 73
                9********************9755 PP

  == domain 2  score: 2.0 bits;  conditional E-value: 0.14
      TPR_11  19 kAlkldPdnaeayynLGlay 38 
                 +Al+l P++  a+  ++la 
  KOO21072.1 105 AALELQPQYTKALVRRALAR 124
                 59*******99998888876 PP

  == domain 3  score: 2.0 bits;  conditional E-value: 0.14
      TPR_11  11 eeAieaYkkAlkldPdn 27 
                 +eA+e+ k+A +ldP++
  KOO21072.1 131 TEALEDAKTAAALDPSD 147
                 6899999********86 PP

>> TPR_14  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.1   0.0   0.00049      0.59       2      34 ..      43      76 ..      42      89 .. 0.80
   2 ?    4.5   0.6     0.063        76       7      42 ..      86     123 ..      82     125 .. 0.78
   3 !   10.2   2.2   0.00098       1.2       3      37 ..     116     150 ..     114     157 .. 0.88

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00049
      TPR_14  2 eallalaeallalGdpdeAiallrralalaP.dd 34
                +a+++++ +++ ++++d+Ai+++  a++  P d+
  KOO21072.1 43 RAHKERGNVHFKAQEWDAAIDCYTHAIEVMPpDE 76
                7999********************9999543143 PP

  == domain 2  score: 4.5 bits;  conditional E-value: 0.063
      TPR_14   7 laeallalGdpdeAiallrralalaPddaeaw..llla 42 
                 +a+a++  +++++ ++ + +al+l+P+   a+  ++la
  KOO21072.1  86 RAAAFAKIDEHEGVVDDCTAALELQPQYTKALvrRALA 123
                 688888889999999999********996655115555 PP

  == domain 3  score: 10.2 bits;  conditional E-value: 0.00098
      TPR_14   3 allalaeallalGdpdeAiallrralalaPddaea 37 
                 al ++a a +al++p eA++ ++ a al+P+d  +
  KOO21072.1 116 ALVRRALAREALDQPTEALEDAKTAAALDPSDKGL 150
                 78899*************************99765 PP

>> TPR_7  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   0.0   4.2e-06     0.005       6      31 ..      49      75 ..      44      80 .. 0.78
   2 ?   -1.3   0.0       2.5     3e+03       4      28 ..      85     109 ..      83     112 .. 0.74
   3 ?   -0.2   0.1       1.1   1.3e+03       1      34 [.     116     147 ..     116     149 .. 0.72
   4 ?   -3.1   0.1       9.2   1.1e+04      18      31 ..     153     164 ..     152     169 .. 0.64

  Alignments for each domain:
  == domain 1  score: 16.8 bits;  conditional E-value: 4.2e-06
       TPR_7  6 arlysrlGdyeeAielyeqsL.altkd 31
                ++++++ ++++ Ai++y+ ++ ++  d
  KOO21072.1 49 GNVHFKAQEWDAAIDCYTHAIeVMPPD 75
                99*****************76444344 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 2.5
       TPR_7   4 nLarlysrlGdyeeAielyeqsLal 28 
                 n a ++ +  ++e  ++ ++++L+l
  KOO21072.1  85 NRAAAFAKIDEHEGVVDDCTAALEL 109
                 6677888888999999999995544 PP

  == domain 3  score: -0.2 bits;  conditional E-value: 1.1
       TPR_7   1 aLlnLarlysrlGdyeeAielyeqsLaltkdped 34 
                 aL++ a ++++l +  eA+e  +   a + dp+d
  KOO21072.1 116 ALVRRALAREALDQPTEALEDAKT--AAALDPSD 147
                 567778888888888899888888..66666655 PP

  == domain 4  score: -3.1 bits;  conditional E-value: 9.2
       TPR_7  18 AielyeqsLaltkd 31 
                 A++ +e+  a ++ 
  KOO21072.1 153 AVSRLEK--ASAEK 164
                 7777888..65554 PP

>> TPR_16  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.9   0.2   0.00098       1.2      33      61 ..      41      69 ..      35      92 .. 0.78
   2 !    9.4   2.3    0.0013       1.6      22      67 ..     105     147 ..     103     148 .. 0.94

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.00098
      TPR_16 33 aaeAllllgdaalrqgrlaeAaalyraal 61
                 a+A+ ++g+++++++++++A++ y  a+
  KOO21072.1 41 EARAHKERGNVHFKAQEWDAAIDCYTHAI 69
                58899999999999999999987666555 PP

  == domain 2  score: 9.4 bits;  conditional E-value: 0.0013
      TPR_16  22 aalkrdpssPdaaeAllllgdaalrqgrlaeAaalyraalraapda 67 
                 aal+++   P+   Al  +++a+ ++   +eA++  + a++ +p++
  KOO21072.1 105 AALELQ---PQYTKALVRRALAREALDQPTEALEDAKTAAALDPSD 147
                 89****...************************9999999999986 PP

>> TPR_17  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.5   0.0       0.2   2.3e+02       1      28 [.      64      95 ..      64      98 .. 0.80
   2 !    9.0   0.1    0.0017         2       2      34 .]     103     135 ..     102     135 .. 0.93
   3 ?    0.4   0.0      0.92   1.1e+03       3      28 ..     138     168 ..     137     178 .. 0.74

  Alignments for each domain:
  == domain 1  score: 2.5 bits;  conditional E-value: 0.2
      TPR_17  1 lylkalel....dPnnadaynnLAelllknGd 28
                +y+ a+e     +P  a+++ n+A +++k+ +
  KOO21072.1 64 CYTHAIEVmppdEPERAVFFANRAAAFAKIDE 95
                78888888777668889*******99998765 PP

  == domain 2  score: 9.0 bits;  conditional E-value: 0.0017
      TPR_17   2 ylkaleldPnnadaynnLAelllknGdlmtArq 34 
                 ++ alel P + +a+  +A + + + ++ +A++
  KOO21072.1 103 CTAALELQPQYTKALVRRALAREALDQPTEALE 135
                 678************************999975 PP

  == domain 3  score: 0.4 bits;  conditional E-value: 0.92
      TPR_17   3 lkaleldPnn.....adaynnLAelllknGd 28 
                 + a++ldP++     a++  ++A + +  ++
  KOO21072.1 138 KTAAALDPSDkglvaAVSRLEKASAEKLEKQ 168
                 5788999999888888888888887774444 PP

>> TPR_8  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.9   0.0     0.031        37       7      30 ..      48      71 ..      42      74 .. 0.84
   2 ?    0.0   0.0       1.1   1.3e+03      21      33 ..     100     112 ..      80     113 .. 0.72
   3 !    6.7   0.0    0.0081       9.6       2      34 .]     115     147 ..     114     147 .. 0.93

  Alignments for each domain:
  == domain 1  score: 4.9 bits;  conditional E-value: 0.031
                HHHHHHHTT-HHHHHHHHHHHHHH CS
       TPR_8  7 lgsiylklgdyeeAkeyyekalel 30
                 g++++k ++ ++A+ +y +a+e 
  KOO21072.1 48 RGNVHFKAQEWDAAIDCYTHAIEV 71
                577888888889**********95 PP

  == domain 2  score: 0.0 bits;  conditional E-value: 1.1
                 HHHHHHHHHHHHH CS
       TPR_8  21 keyyekaleldpd 33 
                 +  +  alel+p+
  KOO21072.1 100 VDDCTAALELQPQ 112
                 5677899***998 PP

  == domain 3  score: 6.7 bits;  conditional E-value: 0.0081
                 CHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH. CS
       TPR_8   2 eayynlgsiylklgdyeeAkeyyekaleldpdn 34 
                 +a+++ +++ + l +  eA e  + a  ldp++
  KOO21072.1 115 KALVRRALAREALDQPTEALEDAKTAAALDPSD 147
                 689999*************************75 PP

>> TPR_15  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.5   0.0     0.057        69     152     182 ..      48      78 ..      36      83 .. 0.83
   2 ?    9.2   1.0   0.00054      0.64     145     184 ..     113     152 ..      84     154 .. 0.83

  Alignments for each domain:
  == domain 1  score: 2.5 bits;  conditional E-value: 0.057
      TPR_15 152 raelyrqegqtdaAlrdyreAlalapdssel 182
                 r++++ ++ ++daA+ +y  A+++ p ++  
  KOO21072.1  48 RGNVHFKAQEWDAAIDCYTHAIEVMPPDEPE 78 
                 7889999****************99988765 PP

  == domain 2  score: 9.2 bits;  conditional E-value: 0.00054
      TPR_15 145 saafllaraelyrqegqtdaAlrdyreAlalapdsselra 184
                     l++ra + ++ +q+ +Al+d++ A al+p ++ l a
  KOO21072.1 113 YTKALVRRALAREALDQPTEALEDAKTAAALDPSDKGLVA 152
                 4557999***************************998766 PP

>> TPR_6  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.6   0.0      0.05        60       7      24 ..      49      66 ..      47      70 .. 0.82
   2 ?    7.5   0.2     0.006       7.2       2      23 ..     116     137 ..     115     146 .. 0.85

  Alignments for each domain:
  == domain 1  score: 4.6 bits;  conditional E-value: 0.05
                HHHHHHHHHHHHHHHHHH CS
       TPR_6  7 alsyrklgdtdkAleale 24
                +  ++k++++d+A++ + 
  KOO21072.1 49 GNVHFKAQEWDAAIDCYT 66
                78899977*******996 PP

  == domain 2  score: 7.5 bits;  conditional E-value: 0.006
                 HHHHHHHHHHHHHHHHHHHHHH CS
       TPR_6   2 AlyklalsyrklgdtdkAleal 23 
                 Al ++al++++l+++++Ale  
  KOO21072.1 116 ALVRRALAREALDQPTEALEDA 137
                 99**********9*****9865 PP

>> Lant_dehydr_C  Lantibiotic biosynthesis dehydratase C-term
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.5   4.1e-05     0.049     151     271 ..      49     168 ..      40     196 .. 0.75

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 4.1e-05
                    HHHHTT--HHHHHHHHHHHHSSSS-HHHHH..HHHHHHHHHHHH..TSTTHHH.HHHHHHHHHHHTHHHHHHHHHHHHHHHH-SSS-SS.....HH CS
  Lant_dehydr_C 151 ervrsreqrlglalqlvdvllstfgldleekvdlleryaeafla..efsdtkkalrealdrkyraqrealearlravlaaaaepesegesadlppf 244
                     +v+ ++q +++a++  + +  ++ +d  e++ ++ ++a+af++  e+++ ++  ++al+ + + +++ ++++l   ++a+++p++++e+a+  ++
     KOO21072.1  49 GNVHFKAQEWDAAIDCYTHAIEVMPPDEPERAVFFANRAAAFAKidEHEGVVDDCTAALELQPQYTKALVRRAL--AREALDQPTEALEDAKTAAA 142
                    6788899***********************************97447777777777777777776666666666..34555556777777777777 PP

                    HHHHHHHHHHHHHHHHHHHHTTS---- CS
  Lant_dehydr_C 245 laewaerlrelrrrlealeasgeltld 271
                    l +  + l ++  rle++  +++l+ +
     KOO21072.1 143 LDPSDKGLVAAVSRLEKA-SAEKLEKQ 168
                    777777777777777777.44445443 PP

>> MIT  MIT (microtubule interacting and transport) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.0   0.00042      0.51      16      34 ..      54      72 ..      54      74 .. 0.90
   2 ?   -0.6   0.1       1.2   1.4e+03       3      11 ..     132     140 ..     113     148 .. 0.59
   3 ?   -0.9   0.3       1.5   1.8e+03      30      52 ..     153     175 ..     150     179 .. 0.55

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00042
         MIT 16 nagnyeeAlelYkealelL 34
                +a+++++A+++Y++a+e++
  KOO21072.1 54 KAQEWDAAIDCYTHAIEVM 72
                5899************975 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 1.2
         MIT   3 kAlelvkkA 11 
                 +Ale +k+A
  KOO21072.1 132 EALEDAKTA 140
                 345555555 PP

  == domain 3  score: -0.9 bits;  conditional E-value: 1.5
         MIT  30 alelLlqalkekneerrellrek 52 
                 a+  L +a +ek e+++e +  k
  KOO21072.1 153 AVSRLEKASAEKLEKQKEEMLGK 175
                 44555666666555666655555 PP

>> CAP_N  Adenylate cyclase associated (CAP) N terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.3   4.5    0.0012       1.4     241     270 ..      14      45 ..       2      54 .. 0.46
   2 ?    1.1   0.1      0.18   2.2e+02       7      21 ..     150     164 ..     125     187 .. 0.71

  Alignments for each domain:
  == domain 1  score: 8.3 bits;  conditional E-value: 0.0012
                 XXXXXX....XXXXXXXX.......XXXXXXX CS
       CAP_N 241 aaaaggpppPpPpPppasvf..eeesaaasas 270
                  +++++p+pPpPpP p +v+  ee  a+a a+
  KOO21072.1  14 DKSKEAPAPPPPPPLPVPVPvpEEILAEARAH 45 
                 33344444545544344444224433333333 PP

  == domain 2  score: 1.1 bits;  conditional E-value: 0.18
                 XXXXXXXXXXX.... CS
       CAP_N   7 LEaatsrLEdiaise 21 
                 L aa+srLE+ ++++
  KOO21072.1 150 LVAAVSRLEKASAEK 164
                 557788888874321 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (211 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       985  (0.0549389); expected 358.6 (0.02)
Passed bias filter:                      689  (0.0384294); expected 358.6 (0.02)
Passed Vit filter:                        73  (0.00407162); expected 17.9 (0.001)
Passed Fwd filter:                        16  (0.000892409); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              15  [number of targets reported over threshold]
# CPU time: 0.50u 0.26s 00:00:00.76 Elapsed: 00:00:00.44
# Mc/sec: 1435.91
//
Query:       KOO21073.1  [L=266]
Description: hypothetical protein Ctob_000481 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.014   16.0   0.7        1.4    9.6   0.1    2.4  2  YabA       Initiation control protein YabA
      0.068   12.2   1.6       0.18   10.9   0.0    2.0  2  Dus        Dihydrouridine synthase (Dus)
        0.3   11.5   2.4        1.4    9.3   0.4    2.7  3  FlaC_arch  Flagella accessory protein C (FlaC)
       0.89    9.9   4.5        2.3    8.6   0.7    2.7  2  CCDC-167   Coiled-coil domain-containing protein 167
        1.4    9.3   7.2         12    6.2   0.8    3.0  2  BLOC1_2    Biogenesis of lysosome-related organelles complex-
        7.8    7.2  10.5         12    6.6   0.4    2.9  3  SlyX       SlyX


Domain annotation for each model (and alignments):
>> YabA  Initiation control protein YabA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   0.1   0.00046       1.4       8      42 ..      99     133 ..      93     181 .. 0.85
   2 ?    4.7   0.0     0.016        47       7      58 ..     201     252 ..     196     264 .. 0.81

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 0.00046
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
        YabA   8 dkleeleeqleelleeleelkeelaelleenaeLe 42 
                 +++++l  q++el ++ ee++++l++l +en +++
  KOO21073.1  99 KRVNTLRLQFSELASQAEEMQQQLERLAQENYAIS 133
                 57899999999999999999999999999998776 PP

  == domain 2  score: 4.7 bits;  conditional E-value: 0.016
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHXXXXXX CS
        YabA   7 fdkleeleeqleelleeleelkeelaelleenaeLeleneklrerleeeekk 58 
                  +++ ele +lee+    e+l++ l +l + +a+L +  ++lr++  + +k+
  KOO21073.1 201 ERQVIELEPRLEEVDVYTETLEMMLFRLRDAHAALLAHIDTLRDHGLQMDKE 252
                 57899**************************************986333332 PP

>> Dus  Dihydrouridine synthase (Dus)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.3   0.4       0.1     3e+02     240     302 ..      54     123 ..      28     131 .. 0.47
   2 ?   10.9   0.0     6e-05      0.18      54      80 ..     178     204 ..     159     208 .. 0.78

  Alignments for each domain:
  == domain 1  score: 0.3 bits;  conditional E-value: 0.1
                 HHHHHHHHHHHHHHCHHTTCCCC...CCHHHHHHHHHHHHH...HTTTTCHHHHHHHHHHHHCC.HHCHH CS
         Dus 240 laeeaeiveehlkkleeelgedk...glrkirkhlawylkg...lkkaaelrreleevsdkeea.lenle 302
                   ++ ++++ +++ +++ l  d+   g+r + ++  + ++     k+ ++lr +++e+++++e+ +++le
  KOO21073.1  54 TFKRRALLSDRYPLVASALAADEagmGMRVVQRQALQSIEAdlaEKRVNTLRLQFSELASQAEEmQQQLE 123
                 3344555555555555555444311134444444444444344344445677777777776666444443 PP

  == domain 2  score: 10.9 bits;  conditional E-value: 6e-05
                 SCEEEEEE-S-HHHHHHHHHHHHHTT- CS
         Dus  54 tplavQlggsdpallaeaAklvadlga 80 
                   l+vQlgg++p++++e A++++++++
  KOO21073.1 178 LELSVQLGGNHPQVVLETARVAVERQV 204
                 569*******************99654 PP

>> FlaC_arch  Flagella accessory protein C (FlaC)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3   0.4   0.00048       1.4      13      40 ..      98     125 ..      87     127 .. 0.80
   2 ?   -1.7   0.0       1.4   4.1e+03       9      22 ..     160     173 ..     158     180 .. 0.70
   3 ?    0.2   0.0      0.33   9.9e+02       4      23 ..     206     225 ..     200     244 .. 0.69

  Alignments for each domain:
  == domain 1  score: 9.3 bits;  conditional E-value: 0.00048
   FlaC_arch  13 steletvkkeneelsksveelkenVkdl 40 
                 + +++t++ +++el ++ ee++++ ++l
  KOO21073.1  98 EKRVNTLRLQFSELASQAEEMQQQLERL 125
                 458999***************9998876 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 1.4
   FlaC_arch   9 lsklsteletvkke 22 
                 l+kl+ +l++++++
  KOO21073.1 160 LDKLDARLASIEAS 173
                 67777788877765 PP

  == domain 3  score: 0.2 bits;  conditional E-value: 0.33
   FlaC_arch   4 elEnklsklsteletvkken 23 
                 elE +l+++++  et++  +
  KOO21073.1 206 ELEPRLEEVDVYTETLEMML 225
                 77777777777666666544 PP

>> CCDC-167  Coiled-coil domain-containing protein 167
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.6   0.7   0.00077       2.3      21      67 ..      90     131 ..      82     138 .. 0.71
   2 ?    1.9   0.2     0.097   2.9e+02      20      59 ..     160     212 ..     155     239 .. 0.54

  Alignments for each domain:
  == domain 1  score: 8.6 bits;  conditional E-value: 0.00077
    CCDC-167  21 eaverrlrkeelseeeResleeEeaslkeqleenekeLksLrkeNrk 67 
                 +++e  l ++++       l    ++l +q+ee +++L++L +eN  
  KOO21073.1  90 QSIEADLAEKRVN-----TLRLQFSELASQAEEMQQQLERLAQENYA 131
                 5555544444444.....445556799******************75 PP

  == domain 2  score: 1.9 bits;  conditional E-value: 0.097
    CCDC-167  20 Leaverrlrkeelseee.............ResleeEeaslkeqleenekeLk 59 
                 L++++ rl + e s+ +                le+ + +++ q+ e e++L+
  KOO21073.1 160 LDKLDARLASIEASSRAllelsvqlggnhpQVVLETARVAVERQVIELEPRLE 212
                 55556666666655555555555555555533333333333333333333333 PP

>> BLOC1_2  Biogenesis of lysosome-related organelles complex-1 subunit 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.8   0.8     0.011        34      26      68 ..      98     126 ..      85     134 .. 0.56
   2 ?    6.2   0.8    0.0041        12      69      93 ..     199     223 ..     157     225 .. 0.82

  Alignments for each domain:
  == domain 1  score: 4.8 bits;  conditional E-value: 0.011
     BLOC1_2  26 eklNeaasekykklkdvaaslekkleklnekyeelqpylqqid 68 
                 e              ++++ l+ ++++l ++ ee+q++l+++ 
  KOO21073.1  98 E--------------KRVNTLRLQFSELASQAEEMQQQLERLA 126
                 3..............3444555555555555555555554443 PP

  == domain 2  score: 6.2 bits;  conditional E-value: 0.0041
     BLOC1_2  69 qiekqvteLeeavseLDeyskeLEa 93 
                 ++e+qv eLe   +e+D y+  LE 
  KOO21073.1 199 AVERQVIELEPRLEEVDVYTETLEM 223
                 5899*******************96 PP

>> SlyX  SlyX
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.4   2.1    0.0093        28      15      46 ..      97     128 ..      86     144 .. 0.78
   2 ?   -2.4   0.0       2.6   7.7e+03      40      53 ..     160     173 ..     157     180 .. 0.52
   3 ?    6.6   0.4    0.0039        12       2      53 ..     201     252 ..     200     260 .. 0.88

  Alignments for each domain:
  == domain 1  score: 5.4 bits;  conditional E-value: 0.0093
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT CS
        SlyX  15 qedtieeLndvvaeqqqqidrlqrqlrllaer 46 
                  e+ +++L  +  e + q +++q+ql++la++
  KOO21073.1  97 AEKRVNTLRLQFSELASQAEEMQQQLERLAQE 128
                 47777888888888888888888888888775 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 2.6
                 HHHHHHT-XXXXXX CS
        SlyX  40 lrllaerlkelees 53 
                 l++l  rl+++e+s
  KOO21073.1 160 LDKLDARLASIEAS 173
                 33444444444444 PP

  == domain 3  score: 6.6 bits;  conditional E-value: 0.0039
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-XXXXXX CS
        SlyX   2 eerleeLEiklafqedtieeLndvvaeqqqqidrlqrqlrllaerlkelees 53 
                 e +++eLE +l   +   e+L  ++++ ++  ++l ++++ l+++  +++++
  KOO21073.1 201 ERQVIELEPRLEEVDVYTETLEMMLFRLRDAHAALLAHIDTLRDHGLQMDKE 252
                 77899*************************************9987666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (266 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1450  (0.0808746); expected 358.6 (0.02)
Passed bias filter:                      764  (0.0426125); expected 358.6 (0.02)
Passed Vit filter:                        89  (0.00496402); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.51u 0.27s 00:00:00.78 Elapsed: 00:00:00.42
# Mc/sec: 1891.16
//
Query:       KOO21074.1  [L=123]
Description: hypothetical protein Ctob_000488 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (123 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       269  (0.0150036); expected 358.6 (0.02)
Passed bias filter:                      252  (0.0140554); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.25s 00:00:00.62 Elapsed: 00:00:00.41
# Mc/sec: 899.35
//
Query:       KOO21075.1  [L=194]
Description: hypothetical protein Ctob_000486 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (194 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       292  (0.0162865); expected 358.6 (0.02)
Passed bias filter:                      259  (0.0144459); expected 358.6 (0.02)
Passed Vit filter:                        11  (0.000613531); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.41u 0.24s 00:00:00.64 Elapsed: 00:00:00.41
# Mc/sec: 1415.27
//
Query:       KOO21076.1  [L=464]
Description: hypothetical protein Ctob_000480 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
  ------ inclusion threshold ------
      0.086   12.2   0.1       0.19   11.1   0.0    1.6  2  ThrE          Putative threonine/serine exporter
       0.14   12.4   0.9       0.47   10.7   0.5    2.1  1  Seryl_tRNA_N  Seryl-tRNA synthetase N-terminal domain


Domain annotation for each model (and alignments):
>> ThrE  Putative threonine/serine exporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   2.1e-05      0.19      12      53 ..      70     112 ..      66     170 .. 0.68
   2 ?   -3.4   0.0      0.55     5e+03     219     238 ..     179     198 ..     178     199 .. 0.87

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 2.1e-05
        ThrE  12 esGaetyrvedtmkriaralgleevevfvtptsiivsv.deee 53 
                  sGa ++ +e++   +ara g e+++v+++++sii  + +++e
  KOO21076.1  70 GSGARAQALEASFAEMARAAGAETADVDAGMQSIIEKFvSRDE 112
                 58*********************************99965322 PP

  == domain 2  score: -3.4 bits;  conditional E-value: 0.55
        ThrE 219 RlveailialaiafGivlal 238
                 R+vea  + l ia+G +++l
  KOO21076.1 179 RAVEAHQLQLQIATGLAAVL 198
                 99999999999999999887 PP

>> Seryl_tRNA_N  Seryl-tRNA synthetase N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.5   5.3e-05      0.47      24      54 ..     100     130 ..      90     173 .. 0.77

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 5.3e-05
                   CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
  Seryl_tRNA_N  24 dkadvdelleldekrrelqveleelqaerNe 54 
                    ++ ++++++ de+rr l +e e lqa+r +
    KOO21076.1 100 MQSIIEKFVSRDEARRGLLAEQERLQAKRTN 130
                   67889***********************976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (464 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       605  (0.0337442); expected 358.6 (0.02)
Passed bias filter:                      283  (0.0157845); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.48u 0.27s 00:00:00.75 Elapsed: 00:00:00.43
# Mc/sec: 3263.76
//
Query:       KOO21077.1  [L=294]
Description: kynurenine 3-monooxygenase and related flavoprotein monooxygenase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.6e-06   28.0   0.0     0.0015   18.4   0.0    3.0  3  FAST_1        FAST kinase-like protein, subdomain 1
  ------ inclusion threshold ------
       0.36   10.9   2.1         21    5.1   0.1    2.9  3  Peptidase_C1  Papain family cysteine protease


Domain annotation for each model (and alignments):
>> FAST_1  FAST kinase-like protein, subdomain 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    3.6   0.0    0.0073        66      29      57 ..     137     165 ..     122     167 .. 0.81
   2 !   18.4   0.0   1.7e-07    0.0015       5      61 ..     153     206 ..     149     210 .. 0.91
   3 !    6.3   0.0     0.001       9.2      19      58 ..     236     275 ..     221     277 .. 0.85

  Alignments for each domain:
  == domain 1  score: 3.6 bits;  conditional E-value: 0.0073
      FAST_1  29 epylsslspeelldavwsLcileqfpeal 57 
                 +++l+s++++el + +w+++  ++  ++l
  KOO21077.1 137 STRLASMNSQELSNTAWAFATAGHRAPDL 165
                 67999***************999977666 PP

  == domain 2  score: 18.4 bits;  conditional E-value: 1.7e-07
      FAST_1   5 lvfarLNykpenaeeFfeklesrlepylsslspeelldavwsLcileqfpeallnkv 61 
                 ++fa+ +++ +    +f++l+++ e +++ ++p+el +++w+++ +e+  +al ++v
  KOO21077.1 153 WAFATAGHRAP---DLFDALAEVAEAQIDAFNPQELSNLCWAFATVEHDAPALYDAV 206
                 89999999999...6********************************9888887776 PP

  == domain 3  score: 6.3 bits;  conditional E-value: 0.001
      FAST_1  19 eFfeklesrlepylsslspeelldavwsLcileqfpeall 58 
                  +f++l++  + +  +l p++l +++w+ +  ++  ++l 
  KOO21077.1 236 VLFDALAETASARVLELAPQHLANMAWAYTTSQHEAPRLY 275
                 589***************************9999777765 PP

>> Peptidase_C1  Papain family cysteine protease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.0   0.0     0.085   7.6e+02      14      34 ..     140     160 ..     132     171 .. 0.82
   2 ?    4.0   0.0     0.005        45      11      34 ..     174     197 ..     162     206 .. 0.73
   3 ?    5.1   0.1    0.0024        21      16      34 ..     214     232 ..     199     259 .. 0.76

  Alignments for each domain:
  == domain 1  score: 0.0 bits;  conditional E-value: 0.085
                   SG---B-TSSBTHHHHHHHHH CS
  Peptidase_C1  14 vtpvkdqgsCGsCWafsavga 34 
                   + +++ q+    +Waf+++g 
    KOO21077.1 140 LASMNSQELSNTAWAFATAGH 160
                   667788999999******985 PP

  == domain 2  score: 4.0 bits;  conditional E-value: 0.005
                   TTGSG---B-TSSBTHHHHHHHHH CS
  Peptidase_C1  11 ggavtpvkdqgsCGsCWafsavga 34 
                   + ++ + + q+    CWaf++v+ 
    KOO21077.1 174 EAQIDAFNPQELSNLCWAFATVEH 197
                   345888888999999******985 PP

  == domain 3  score: 5.1 bits;  conditional E-value: 0.0024
                   ---B-TSSBTHHHHHHHHH CS
  Peptidase_C1  16 pvkdqgsCGsCWafsavga 34 
                   +++ q+    CWaf++++ 
    KOO21077.1 214 QMNAQNMANTCWAFATAKH 232
                   678899999*******975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (294 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       506  (0.0282224); expected 358.6 (0.02)
Passed bias filter:                      338  (0.0188521); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.45u 0.25s 00:00:00.70 Elapsed: 00:00:00.40
# Mc/sec: 2227.39
//
Query:       KOO21078.1  [L=178]
Description: hypothetical protein Ctob_000490 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.049   14.1   0.5       0.08   13.4   0.5    1.3  1  DUF3357   Domain of unknown function (DUF3357)


Domain annotation for each model (and alignments):
>> DUF3357  Domain of unknown function (DUF3357)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.5   4.4e-06      0.08      14      92 ..      33     121 ..      24     133 .. 0.68

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 4.4e-06
     DUF3357  14 aaaararrpllaavliasalvvlvvlvalagv..........rlagqaslvapgevavsetaesvsaaveetaSRGveaGVSeKssgaa 92 
                 a++ ++r ++l+a ++a+al +++ + +  g            lag+++  a+   + ++  e+ +   +e ++R ve G SeK+++ a
  KOO21078.1  33 AQPMNRRSAVLSAAAAAAALPLMARAEIYQGGtslgmksdkdYLAGSDDALAAIAARANKANEEEKRRKAEEYARAVERGDSEKANALA 121
                 44445555888888888888888888777777888877777655555555444433333333333556669**************9876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (178 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       858  (0.0478554); expected 358.6 (0.02)
Passed bias filter:                      492  (0.0274416); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.26s 00:00:00.66 Elapsed: 00:00:00.39
# Mc/sec: 1383.81
//
Query:       KOO21079.1  [L=385]
Description: hypothetical protein Ctob_000493 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.1e-06   29.0   0.3    1.9e-06   28.2   0.3    1.4  1  CDT1_C    DNA replication factor Cdt1 C-terminal domain


Domain annotation for each model (and alignments):
>> CDT1_C  DNA replication factor Cdt1 C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.2   0.3   1.1e-10   1.9e-06      41      95 ..       5      59 ..       1      60 [. 0.91

  Alignments for each domain:
  == domain 1  score: 28.2 bits;  conditional E-value: 1.1e-10
      CDT1_C 41 lrllfvaekksalpmeevvkklkdSlrtpvskeeaekhlrlLaelaPdWvtivkl 95
                 r  +++ +++ +p +++v +l +  + + s+ e e++l+lL e++P+W+++v l
  KOO21079.1  5 TRECMFEARRRLMPQPDLVRRLLQNAKWISSTAELEAQLQLLTEIVPQWISLVRL 59
                56667889*******************************************9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (385 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       370  (0.020637); expected 358.6 (0.02)
Passed bias filter:                      311  (0.0173462); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.25s 00:00:00.74 Elapsed: 00:00:00.43
# Mc/sec: 2672.74
//
Query:       KOO21080.1  [L=289]
Description: acyl-CoA-binding domain-containing protein 6 isoform [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.2e-28   98.1   6.8    3.2e-17   62.9   2.0    2.1  2  Ank_2     Ankyrin repeats (3 copies)
    4.1e-23   81.1  12.2    1.6e-11   44.2   0.9    3.0  3  Ank_5     Ankyrin repeats (many copies)
    5.2e-20   71.6   6.2    8.8e-12   45.3   0.5    2.4  2  Ank_4     Ankyrin repeats (many copies)
    7.3e-16   58.2   0.0    1.8e-15   56.9   0.0    1.6  2  ACBP      Acyl CoA binding protein
    2.2e-15   55.2   6.9    5.5e-05   23.2   0.1    3.8  4  Ank_3     Ankyrin repeat
    2.7e-15   56.0  11.2    9.9e-06   25.8   0.9    3.5  3  Ank       Ankyrin repeat


Domain annotation for each model (and alignments):
>> Ank_2  Ankyrin repeats (3 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.1   0.2   3.8e-15   1.1e-11      25      83 .]     170     234 ..     148     234 .. 0.82
   2 !   62.9   2.0   1.1e-20   3.2e-17       1      83 []     175     267 ..     175     267 .. 0.92

  Alignments for each domain:
  == domain 1  score: 45.1 bits;  conditional E-value: 3.8e-15
       Ank_2  25 ngktaLhyAakngnleivklLleh......adndgrtpLhyAarsghleivklLlekgadinlkd 83 
                  +  aLh+Aak+g++ ++++L++h      +d+dg+++Lh+A+ sgh  +++ L+e ga +n+++
  KOO21080.1 170 INAIALHAAAKAGDVALCEALVAHgadvdqLDEDGHSALHWACDSGHVAVARCLIEAGAAPNVQN 234
                 3489*********9999******99775555599*************************999875 PP

  == domain 2  score: 62.9 bits;  conditional E-value: 1.1e-20
       Ank_2   1 LhlAakngnlelvklLl.egadpn..k.ngktaLhyAakngnleivklLleh......adndgrtpLhyAarsghleivklLlekgadinlkd 83 
                 Lh Aak g+  l++ L+ +gad++  + +g++aLh+A+ +g++ +++ L+e+      ++ dg tpLh+A+ + h +++klL+  gad +l+d
  KOO21080.1 175 LHAAAKAGDVALCEALVaHGADVDqlDeDGHSALHWACDSGHVAVARCLIEAgaapnvQNVDGLTPLHMACACEHADLAKLLIAIGADTTLRD 267
                 899*****99*******9******7647**********************966677777799*********************88***99987 PP

>> Ank_5  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.3   0.5   8.4e-08   0.00025      19      54 ..     174     209 ..     173     211 .. 0.96
   2 !   36.8   0.3   1.1e-12   3.3e-09       1      53 [.     190     241 ..     190     241 .. 0.95
   3 !   44.2   0.9   5.3e-15   1.6e-11       1      56 []     223     277 ..     223     277 .. 0.98

  Alignments for each domain:
  == domain 1  score: 21.3 bits;  conditional E-value: 8.4e-08
       Ank_5  19 pLhvAakygaadvvrlLlargadlnltdsrGltald 54 
                 +Lh Aak+g   +++ L+a+gad ++ d++G +al+
  KOO21080.1 174 ALHAAAKAGDVALCEALVAHGADVDQLDEDGHSALH 209
                 79********************************97 PP

  == domain 2  score: 36.8 bits;  conditional E-value: 1.1e-12
       Ank_5   1 LlehgpadvnrldgggntpLhvAakygaadvvrlLlargadlnltdsrGltal 53 
                 L++hg adv+ ld++g ++Lh+A+  g+  v+r L++ ga++n+++ +Glt+l
  KOO21080.1 190 LVAHG-ADVDQLDEDGHSALHWACDSGHVAVARCLIEAGAAPNVQNVDGLTPL 241
                 899**.88888888888***********************************8 PP

  == domain 3  score: 44.2 bits;  conditional E-value: 5.3e-15
       Ank_5   1 LlehgpadvnrldgggntpLhvAakygaadvvrlLlargadlnltdsrGltaldlA 56 
                 L+e+g a++n ++ +g tpLh+A+ + +ad+++lL+a gad++l+d +G ta++lA
  KOO21080.1 223 LIEAG-AAPNVQNVDGLTPLHMACACEHADLAKLLIAIGADTTLRDLDGCTAVELA 277
                 89999.************************************************99 PP

>> Ank_4  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.5   0.8   1.7e-12   5.1e-09       4      55 .]     174     224 ..     174     224 .. 0.98
   2 !   45.3   0.5     3e-15   8.8e-12       2      55 .]     205     257 ..     204     257 .. 0.97

  Alignments for each domain:
  == domain 1  score: 36.5 bits;  conditional E-value: 1.7e-12
       Ank_4   4 aLhyaaisgrlelvrlLlekgadinaqdnrsGetalhiAakrgnveilklLl 55 
                 aLh+aa++g++ l++ L+++gad++   +++G +alh A+  g+v +++ L+
  KOO21080.1 174 ALHAAAKAGDVALCEALVAHGADVDQL-DEDGHSALHWACDSGHVAVARCLI 224
                 69************************9.*********************997 PP

  == domain 2  score: 45.3 bits;  conditional E-value: 3e-15
       Ank_4   2 ltaLhyaaisgrlelvrlLlekgadinaqdnrsGetalhiAakrgnveilklLl 55 
                 ++aLh+a+ sg++ ++r L+e ga +n q n +G+t+lh+A+  ++ + +klL+
  KOO21080.1 205 HSALHWACDSGHVAVARCLIEAGAAPNVQ-NVDGLTPLHMACACEHADLAKLLI 257
                 689**************************.***********************8 PP

>> ACBP  Acyl CoA binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.9   0.0   5.9e-19   1.8e-15       2      78 ..      47     119 ..      46     121 .. 0.87
   2 ?   -3.5   0.0       4.1   1.2e+04      22      42 ..     164     184 ..     159     187 .. 0.74

  Alignments for each domain:
  == domain 1  score: 56.9 bits;  conditional E-value: 5.9e-19
                 HHHHHHHHHH.H...HSTS---HHHHHHHHHHHHHHHTSS--S-.---TTSHHHHHHHHHHHHTTT--HHHHHHHHHH CS
        ACBP   2 eeFekavaavkklekklkkkpsneeklelYglyKqateGdvnts.rPsaldfkgkaKwdaWkalkglskeeAkkkYie 78 
                 ++F++a+ +  +      k +s +++l lY+l+Kq t+Gd + s   ++ld++++ Kw+aW +l gl +++A+++Y +
  KOO21080.1  47 ARFHEAARDALS-----LKGLSVSTRLSLYALFKQGTVGDAPSSsSGNLLDPAARSKWKAWSRLAGLPRADAMRQYMQ 119
                 578888888844.....23589*******************88746699***************************86 PP

  == domain 2  score: -3.5 bits;  conditional E-value: 4.1
                 --HHHHHHHHHHHHHHHTSS- CS
        ACBP  22 psneeklelYglyKqateGdv 42 
                 p++e  ++  +l   a++Gdv
  KOO21080.1 164 PEPEPEINAIALHAAAKAGDV 184
                 556666677788888888887 PP

>> Ank_3  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.0         6   1.8e+04       6      12 ..      49      55 ..      49      57 .. 0.81
   2 !   14.6   0.1   1.2e-05     0.036       5      30 ..     174     198 ..     174     199 .. 0.95
   3 !   23.2   0.1   1.9e-08   5.5e-05       1      30 [.     203     231 ..     203     232 .. 0.94
   4 !   19.6   0.1   2.9e-07   0.00088       1      28 [.     236     262 ..     236     264 .. 0.94

  Alignments for each domain:
  == domain 1  score: -3.3 bits;  conditional E-value: 6
       Ank_3  6 LhlAars 12
                +h+Aar 
  KOO21080.1 49 FHEAARD 55
                699*996 PP

  == domain 2  score: 14.6 bits;  conditional E-value: 1.2e-05
       Ank_3   5 pLhlAarsgnleivkfLlenkgadvn 30 
                 +Lh Aa++g+++++++L+  +gadv+
  KOO21080.1 174 ALHAAAKAGDVALCEALVA-HGADVD 198
                 79*****************.9***97 PP

  == domain 3  score: 23.2 bits;  conditional E-value: 1.9e-08
       Ank_3   1 nGetpLhlAarsgnleivkfLlenkgadvn 30 
                 +G ++Lh+A+ sg++++++ L+e  ga +n
  KOO21080.1 203 DGHSALHWACDSGHVAVARCLIE-AGAAPN 231
                 699********************.8*9999 PP

  == domain 4  score: 19.6 bits;  conditional E-value: 2.9e-07
       Ank_3   1 nGetpLhlAarsgnleivkfLlenkgad 28 
                 +G tpLh+A+ + + +++k+L+   gad
  KOO21080.1 236 DGLTPLHMACACEHADLAKLLIA-IGAD 262
                 699********************.6998 PP

>> Ank  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.6   4.5e-06     0.013       5      31 ..     174     201 ..     173     202 .. 0.95
   2 !   20.0   0.1   2.2e-07   0.00066       1      31 [.     203     234 ..     203     235 .. 0.93
   3 !   25.8   0.9   3.3e-09   9.9e-06       1      31 [.     236     267 ..     236     268 .. 0.93

  Alignments for each domain:
  == domain 1  score: 15.9 bits;  conditional E-value: 4.5e-06
                 HHHHHHHHTTHHHHHHHH.TTTSTTCBT CS
         Ank   5 PLHlAatngkkriiklLL.hGAnlnald 31 
                 +LH Aa  g++  +++L+ hGA++++ld
  KOO21080.1 174 ALHAAAKAGDVALCEALVaHGADVDQLD 201
                 8*****99*****************998 PP

  == domain 2  score: 20.0 bits;  conditional E-value: 2.2e-07
                 TSBBHHHHHHHHTTHHHHHHHH.TTTSTTCBT CS
         Ank   1 dGnTPLHlAatngkkriiklLL.hGAnlnald 31 
                 dG+++LH+A+  g++ +++ L+  GA +n ++
  KOO21080.1 203 DGHSALHWACDSGHVAVARCLIeAGAAPNVQN 234
                 8*********99**********88*8899998 PP

  == domain 3  score: 25.8 bits;  conditional E-value: 3.3e-09
                 TSBBHHHHHHHHTTHHHHHHHH.TTTSTTCBT CS
         Ank   1 dGnTPLHlAatngkkriiklLL.hGAnlnald 31 
                 dG TPLH+A+ + +++ +klL+  GA+ +++d
  KOO21080.1 236 DGLTPLHMACACEHADLAKLLIaIGADTTLRD 267
                 8*********99*********966****9998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (289 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       304  (0.0169558); expected 358.6 (0.02)
Passed bias filter:                      239  (0.0133304); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.45u 0.23s 00:00:00.68 Elapsed: 00:00:00.40
# Mc/sec: 2150.25
//
Query:       KOO21081.1  [L=2146]
Description: hypothetical protein Ctob_000478, partial [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (2146 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       526  (0.0293379); expected 358.6 (0.02)
Passed bias filter:                      415  (0.0231469); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.99u 0.30s 00:00:01.29 Elapsed: 00:00:00.43
# Mc/sec: 15122.48
//
Query:       KOO21082.1  [L=90]
Description: hypothetical protein Ctob_000492 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.4e-07   31.0   5.2    2.1e-07   30.4   5.2    1.3  1  UVR            UvrB/uvrC motif
     0.0021   17.5   0.3     0.0026   17.2   0.3    1.1  1  DUF4618        Domain of unknown function (DUF4618)
  ------ inclusion threshold ------
      0.015   15.6   2.5        1.1    9.7   1.0    2.2  2  HalX           HalX domain
      0.027   14.7   7.8      0.046   14.0   7.8    1.4  1  ABC_tran_CTD   ABC transporter C-terminal domain
      0.044   14.3   5.3      0.051   14.1   3.1    1.9  2  HSCB_C         HSCB C-terminal oligomerisation domain
      0.063   12.8   0.1      0.067   12.7   0.1    1.1  1  ADC            Acetoacetate decarboxylase (ADC)
       0.16   12.6   1.5       0.22   12.2   1.5    1.4  1  F420_oxidored  NADP oxidoreductase coenzyme F420-dependent


Domain annotation for each model (and alignments):
>> UVR  UvrB/uvrC motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.4   5.2   8.3e-11   2.1e-07       2      35 ..      28      61 ..      27      62 .. 0.94

  Alignments for each domain:
  == domain 1  score: 30.4 bits;  conditional E-value: 8.3e-11
         UVR  2 klikeLeeemeeAaenedFEkAAklRDqinalkk 35
                 ++ eL++e++eA+e+ed+ kAA+l+ qi++lk+
  KOO21082.1 28 TRLAELQAELKEAVEAEDYAKAAELKPQIKELKA 61
                6899****************************96 PP

>> DUF4618  Domain of unknown function (DUF4618)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   0.3     1e-06    0.0026      50     102 ..      15      68 ..       7      71 .. 0.86

  Alignments for each domain:
  == domain 1  score: 17.2 bits;  conditional E-value: 1e-06
     DUF4618  50 lktvisileksskkqleqakaeLqeweeke.ekklekLeqqleqlnakvqklqe 102
                 +++v++++ + ++++l +++aeL+e  e e   k ++L+ q+++l+a++  + e
  KOO21082.1  15 VRKVSAVVAQRNETRLAELQAELKEAVEAEdYAKAAELKPQIKELKATIDAATE 68 
                 578999*****************997665516899**************98765 PP

>> HalX  HalX domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   1.0   0.00041       1.1      41      66 ..      27      48 ..      23      50 .. 0.88
   2 ?    5.7   0.0    0.0072        18      38      57 ..      50      69 ..      48      82 .. 0.81

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 0.00041
        HalX 41 earleelraqldetldelddaddfea 66
                e+rl+el+a+l e +++    +d++ 
  KOO21082.1 27 ETRLAELQAELKEAVEA----EDYAK 48
                79**************9....99976 PP

  == domain 2  score: 5.7 bits;  conditional E-value: 0.0072
        HalX 38 qeLearleelraqldetlde 57
                +eL+ ++ el+a++d+  ++
  KOO21082.1 50 AELKPQIKELKATIDAATEA 69
                69999**********99887 PP

>> ABC_tran_CTD  ABC transporter C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   7.8   1.8e-05     0.046      21      62 ..      27      68 ..      24      69 .. 0.94

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 1.8e-05
  ABC_tran_CTD 21 EeeiaeleaeladpelysdpeklaelsaeleeleaeLeelye 62
                  E+++ael+ael ++   +d++k ael  +++el+a +++++e
    KOO21082.1 27 ETRLAELQAELKEAVEAEDYAKAAELKPQIKELKATIDAATE 68
                  99**********99888**********************998 PP

>> HSCB_C  HSCB C-terminal oligomerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   3.1     2e-05     0.051      31      61 ..      22      52 ..       2      57 .. 0.86
   2 ?    1.4   0.1      0.18   4.5e+02      27      42 ..      55      70 ..      50      82 .. 0.52

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 2e-05
                HHHHHHHHHHHHHHHHHHHHHTT-HHHHHHH CS
      HSCB_C 31 lkaeveerieeleaeleeafekkdleaaadl 61
                +++++e+r++el ael+ea e++d+++aa+l
  KOO21082.1 22 VAQRNETRLAELQAELKEAVEAEDYAKAAEL 52
                6899****************999*****986 PP

  == domain 2  score: 1.4 bits;  conditional E-value: 0.18
                HHHHHHHHHHHHHHHH CS
      HSCB_C 27 eleelkaeveerieel 42
                +++elka +++  e+ 
  KOO21082.1 55 QIKELKATIDAATEAA 70
                3344444444444443 PP

>> ADC  Acetoacetate decarboxylase (ADC)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.1   2.6e-05     0.067     106     155 ..       3      53 ..       2      73 .. 0.85

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 2.6e-05
                 -EEE-EEEEEEETTEEEEEEEE.TTEEEEEEEEEEEEEE-HHHHHHHHHTS CS
         ADC 106 PKklAditltregdtlggtver.ggkrlaeltvelkerapddeealpslka 155
                 +++lA+i  +++ +++++ v + + +rlael++elke++ +++ a++++ +
  KOO21082.1   3 ARELASIAADHPVRKVSAVVAQrNETRLAELQAELKEAVEAEDYAKAAELK 53 
                 5789*******99999999999899**************887777766555 PP

>> F420_oxidored  NADP oxidoreductase coenzyme F420-dependent
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   1.5   8.4e-05      0.22      14      60 ..       6      51 ..       1      72 [. 0.77

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 8.4e-05
                   HHHHHHHTTS..-GGCEEEEEESSCCCHHHHHHHHC-EEECECHHHHHH CS
  F420_oxidored 14 lasgllaaga..qpheivvansrnpekaeelaeelgvkvtavdneeaae 60
                   las  +aa+   ++ + vva +rn+ +++el++el+  v+a d+++aae
     KOO21082.1  6 LAS--IAADHpvRKVSAVVA-QRNETRLAELQAELKEAVEAEDYAKAAE 51
                   555..444443344444547.***************9999988888887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (90 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1291  (0.0720062); expected 358.6 (0.02)
Passed bias filter:                      619  (0.0345251); expected 358.6 (0.02)
Passed Vit filter:                        74  (0.00412739); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.39u 0.25s 00:00:00.64 Elapsed: 00:00:00.39
# Mc/sec: 686.84
//
Query:       KOO21083.1  [L=272]
Description: pyridoxal-5 -phosphate-dependent protein beta subunit [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.1e-57  194.2   2.8    4.1e-57  193.9   2.8    1.2  1  PALP      Pyridoxal-phosphate dependent enzyme
  ------ inclusion threshold ------
      0.022   14.7   0.2      0.086   12.7   0.0    2.1  2  YjeF_N    YjeF-related protein N-terminus


Domain annotation for each model (and alignments):
>> PALP  Pyridoxal-phosphate dependent enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  193.9   2.8   4.5e-61   4.1e-57       4     244 ..       5     244 ..       3     255 .. 0.95

  Alignments for each domain:
  == domain 1  score: 193.9 bits;  conditional E-value: 4.5e-61
                 CSSS--EEEECCTCCCCCCEEEEEEGGGSTTSBTTHHHHHHHHHHHHTTTTTSEEEEEBSSHHHHHHHHHHHHHT-EEEEEEETTS-HHHHHHHHHTT- CS
        PALP   4 gigpTPlvrlprlskelgvplflKlEslnptgSfKdRgaeyllarlkegtgaktvveassGNhgralAaaaallGlkvtivvpadaspekvallrllGa 102
                  i +TPl+++  ls+++g++++lK + l+p+gSfKdRg+++++++l+e  g + v+++s+GN+g a+Aa++++lG+ v + vp +++  +++++r+ Ga
  KOO21083.1   5 LISQTPLLESAPLSAAVGTRVLLKVDALQPSGSFKDRGMAFMCSTLRER-GVTSVICSSGGNAGHAVAAMGRRLGMSVKVIVPTTTKRIMLDKIRAQGA 102
                 5889*********************************************.************************************************* PP

                 EEEEECCHHHHHHHHHHHHHHHSTTCEE--TTTSHHHHHHHHTHHHHHHHHTTTTEEEEEEE-SSSHHHHHHHHHHHH.HSTT-EEEEEEECTTCGGTT CS
        PALP 103 evvevggdydeavaaaaelaaegegaylvsqfdnptviegygtiglEileqlggkpdavvvpvGgGgliaGiaaglke.rrpdvrvigvepegsdalar 200
                 ev++ g +++ea  +a+el a ++ a +++++d+++ +eg+++++ E+    g +p avv++vGgGgli G++ g++  ++ dvrv+ +e++g++++a+
  KOO21083.1 103 EVTVHGANWNEADGLARELVAADPAAEYIPPYDHELLWEGHSSLVDEL-VAAGIRPGAVVASVGGGGLINGLYVGMRRhGWHDVRVVSAETDGANCFAA 200
                 ************************************************.68889************************56666**************** PP

                 CCS..S.SS..B.SSS.CCSTCSCGTTCCHHHHSEEEEEEEEEE CS
        PALP 201 slragrrvtvpvsdtiadglavgspselafelldrlvdeivtvs 244
                 +++ag++v++   ++ a++l++ + s+  ++l++++ +++ t +
  KOO21083.1 201 AFAAGKPVRLNAITSVATSLGALQCSATSLRLAAEHPTTACTHD 244
                 ***********************999999999999888666554 PP

>> YjeF_N  YjeF-related protein N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   9.6e-06     0.086      28      89 ..      55     115 ..      10     157 .. 0.80
   2 ?   -0.7   0.0      0.13   1.1e+03      20      35 ..     238     253 ..     215     257 .. 0.67

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 9.6e-06
      YjeF_N  28 kvlvlvGsgnnGgdglaa.ArhLaqegakVtvllleeeekldedaeralellkkaggkvveek 89 
                    v+++sg n g ++aa +r L  +++kV+v ++  ++ + ++++++ ++++  g ++ e +
  KOO21083.1  55 VTSVICSSGGNAGHAVAAmGRRL-GMSVKVIVPTT-TKRIMLDKIRAQGAEVTVHGANWNEAD 115
                 45699999999999987549999.77788877655.446888888888888887777777655 PP

  == domain 2  score: -0.7 bits;  conditional E-value: 0.13
      YjeF_N  20 lgnspaekkvlvlvGs 35 
                  + + +++ v+v++G+
  KOO21083.1 238 TTACTHDEVVVVVCGG 253
                 3366788899999986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (272 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       366  (0.0204139); expected 358.6 (0.02)
Passed bias filter:                      282  (0.0157287); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.38u 0.22s 00:00:00.60 Elapsed: 00:00:00.35
# Mc/sec: 2306.26
//
Query:       KOO21084.1  [L=389]
Description: methylthioribose kinase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    8.3e-08   32.4   0.1    1.4e-07   31.7   0.1    1.3  1  APH       Phosphotransferase enzyme family


Domain annotation for each model (and alignments):
>> APH  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.7   0.1   7.7e-12   1.4e-07       4     186 ..      64     274 ..      61     277 .. 0.66

  Alignments for each domain:
  == domain 1  score: 31.7 bits;  conditional E-value: 7.7e-12
                 EE--.SSCEEEEEEETT.-.-EEEEE......E-TT..S-HHHHHHHHHHHHHHHHTT-......B--B-CTTBS-EEETTEEEEEEE----.EE-SS. CS
         APH   4 elsggasnrtylvttpa.g.ryvlrr......nppa..raaeeirrevallrlLakagv......pvPevlagdtddeeigllfalieyvpg.rsllr. 84 
                 e+ +g+ n   +++t++ g + ++++      + p+   + e+++re +++   a+a        + P+++++     +++  ++++ey+ g r+l + 
  KOO21084.1  64 EITDGNVN-FSFCVTGRfGhQIFVKQahgflkWQPQmkLERERMAREIRYYSDAARALGgdraaeYLPRIVHF-----DAESTVVVMEYLSGfRVLFDv 156
                 55555555.3334444445455555533333322222223344556666664444333337557778888885.....344457888888884445558 PP

                 .HHHHHHHHHHHHHHHHHHCCHHCH.-STTTB-SHHC.HTCCHHHHHHCHHHCCCGCCTCC..HHHHHHHH...HHHHHHHH--S........SS-EEE CS
         APH  85 .klsaaqlpellealgeflaalhqvdpaalpladfla.qdlellrqlesatarllaselld..lleeleeq...vlaalaallpg........elptvl 168
                   +  ++ ++++  lg +l+++h ++  ++ ++  ++   ++ ++ l + +  ++ s ++    + +  ++   v++++  l+++        +++ vl
  KOO21084.1 157 iFEEGSVPRAAAVHLGTYLGHVHLASLVQSSPTAVADsAVAYWNPALRAIQLEHVFSICFThsTRGRTLAEdpaVMREVSLLRAKylgytfdpHDRLVL 255
                 8888999*******************55555555554044444455555555999999999887777777788899999888888999*********** PP

                 E-SS-SGGGEEEC...TTE CS
         APH 169 lHgDlhpgNllvd.pddgr 186
                 +HgDlhpg +++  ++ gr
  KOO21084.1 256 CHGDLHPGSVMISeDGSGR 274
                 *************555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (389 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       366  (0.0204139); expected 358.6 (0.02)
Passed bias filter:                      339  (0.0189079); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.22s 00:00:00.66 Elapsed: 00:00:00.36
# Mc/sec: 3215.52
//
Query:       KOO21085.1  [L=328]
Description: hypothetical protein Ctob_001429 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.2e-17   63.1   0.1    8.2e-11   42.2   0.1    2.2  2  LCM       Leucine carboxyl methyltransferase


Domain annotation for each model (and alignments):
>> LCM  Leucine carboxyl methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.2   0.1   4.6e-15   8.2e-11      16     118 ..     131     229 ..     118     232 .. 0.78
   2 !   20.1   0.0   2.8e-08    0.0005     153     187 ..     229     263 ..     227     264 .. 0.92

  Alignments for each domain:
  == domain 1  score: 42.2 bits;  conditional E-value: 4.6e-15
                 HHTSSHTCCCCCCCHHHHHHHHCHCCCHCHHCHGCHCCCCT--HHHHHHHHHHHHHHHHHHHHHH.HCTT.....ESEEEEET-TT--HHHHHHHTTTE CS
         LCM  16 adglidDplaeslvsaaglellerkadkelekekeeekkekkapelnrgiavRtrffddllkaal.saag.....irqvViLGAGlDtrayRlpwlagl 108
                 a g ++D++a+ l+ +a+++++++  +++l++           p+  ++i  Rt f+d++l+++l ++a        qvV++G+G+Dtra+R+ +  g 
  KOO21085.1 131 AAGELEDDVAAELLPSATRWVVSAPLARTLWAPV--------LPK-LAWIKQRTQFIDAALDDFLaKTAAttpleRVQVVLIGSGYDTRALRYREA-GA 219
                 4667899999999999999988777777776642........344.478889*************766668888844***************9876.9* PP

                 EEEEEE-HHH CS
         LCM 109 kvfEvDqpev 118
                 ++fEvD p++
  KOO21085.1 220 RFFEVDLPSL 229
                 *******975 PP

  == domain 2  score: 20.1 bits;  conditional E-value: 2.8e-08
                 HHHHTT-TTSEEEEEEESSGGGS-HHHHHHHHHHH CS
         LCM 153 LaaagfdpekptawvaeGvlvYLtpeasdalleai 187
                 L+a g+d+ +pt++v+e vl+YL+p a +all+ +
  KOO21085.1 229 LEALGLDRRQPTLVVSEAVLFYLSPPAKRALLQDV 263
                 7888***************************9875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (328 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       397  (0.0221429); expected 358.6 (0.02)
Passed bias filter:                      297  (0.0165653); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.25s 00:00:00.69 Elapsed: 00:00:00.41
# Mc/sec: 2429.74
//
Query:       KOO21086.1  [L=322]
Description: protein phosphatase 2c [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.4e-28  100.3   0.0    9.1e-28   97.6   0.0    1.9  1  PP2C      Protein phosphatase 2C
     0.0055   16.8   0.0     0.0091   16.1   0.0    1.3  1  MotY_N    MotY N-terminal domain
     0.0084   16.0   0.1      0.033   14.1   0.0    1.8  2  SpoIIE    Stage II sporulation protein E (SpoIIE)


Domain annotation for each model (and alignments):
>> PP2C  Protein phosphatase 2C
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   97.6   0.0   1.5e-31   9.1e-28      44     251 ..      43     245 ..      32     249 .. 0.79

  Alignments for each domain:
  == domain 1  score: 97.6 bits;  conditional E-value: 1.5e-31
                 SSSHHHHHHHHHHHHHHHHHHHCHTTH.....HHHHHHHHHHHHHHHHHHHH.HHHHCHCCT-EEEEEEEEEETTE.....EEEEEESS-EEEEEETTE CS
        PP2C  44 ggseaakyarehleeilksqksfeele.....kleqalrksfladtdeelks.skantepsksGstavvalirgtk.....lyvAnvGDSravLcrkgn 131
                 gg+ ++++a+ ++ ++l+++  +++++       +  + k+f  +++ ++++ ++  +     G+t + ++i +++     + v++vGDSr + ++ + 
  KOO21086.1  43 GGESISRIAALKVGRSLELSMADTPSKplgvrIAQLRFEKAFEFAEACVKELlPA--DVYACAGTTGTAIVIHDDDdgvrrMAVGHVGDSRLIRGSVQP 139
                 4667777777777777777766666665443322223333333322222332122..2466789****999999999****************999888 PP

                 EE......EECS---STTSHHHHHHHHHTT--EEECCEEETTTBSBSB-EE-GGGTCCCCCCSTSB---EEEEEEE-TTEEEEEEE-HHHHTTSHHHHH CS
        PP2C 132 ak......keltedHkpsdedEreRIeeaggsvsngegrvngsLavsRalGDlelkpketeeqlvsaePdvtsvklteedefliLacdGlwdvlsdqea 224
                 ++      ++ t+dHkpsd++Er+RIe+agg            Lav+Ra+GD e+k        vsa P +  ++l eed+ l++a+dGlw++lsd+e+
  KOO21086.1 140 DGtegwivTARTRDHKPSDPEERARIEKAGG------------LAVARAIGDGEMKT-----VGVSAVPSTMCIPLREEDKVLVIASDGLWEHLSDEEV 221
                 88899*************************9............678**********8.....69*********************************** PP

                 HHHHHHHHHHHTHHHHHHHHHHHHHHH CS
        PP2C 225 vdlvrdelekkkspeevaeelvdeaia 251
                   ++ + + +   ++ +a++lv ea +
  KOO21086.1 222 LAFCYRYRAD---ASLAAKALVLEAAR 245
                 *********7...9******9998865 PP

>> MotY_N  MotY N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.0   1.5e-06    0.0091      86     146 .]      38      96 ..      23      96 .. 0.88

  Alignments for each domain:
  == domain 1  score: 16.1 bits;  conditional E-value: 1.5e-06
      MotY_N  86 dvelekkaawrlLseLeeGrsptfsyqdwyseeekvevalssvnFkkaYeeflqClakLlP 146
                 d++ ++ ++ + +++L+ Grs ++s++d    ++ + v++ + +F+ka+e  ++C+++LlP
  KOO21086.1  38 DGHGKGGESISRIAALKVGRSLELSMAD--TPSKPLGVRIAQLRFEKAFEFAEACVKELLP 96 
                 55556667778899**************..778***************************9 PP

>> SpoIIE  Stage II sporulation protein E (SpoIIE)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.0      0.19   1.1e+03       3      26 ..      30      53 ..      28     124 .. 0.82
   2 !   14.1   0.0   5.4e-06     0.033     118     190 ..     195     262 ..     169     264 .. 0.73

  Alignments for each domain:
  == domain 1  score: -0.7 bits;  conditional E-value: 0.19
                TEEEEEEEECSSSSHHHHHHHHHH CS
      SpoIIE  3 grlalvvgDvvGhGleAalimgll 26
                g+l +++ D+ G+G e+   +++l
  KOO21086.1 30 GTLIAGIFDGHGKGGESISRIAAL 53
                678889999999998887666555 PP

  == domain 2  score: 14.1 bits;  conditional E-value: 5.4e-06
                 EEE--TTE.EEEEESCCCCSSSHHHHHHCCCHHCH.HHHCT.....HCCHHHHHHHHHHH..HTTSSSSS-EEEEEE CS
      SpoIIE 118 elelepgd.tlllyTDGvtEardsdgelfgkerll.allasaegesleelldalveelle..lgsgeleDDitllvl 190
                  ++l+++d +l++++DG+ E  ++++ l    +++ ++      ++++  ++alv e+ +   ++g  +DDit++v+
  KOO21086.1 195 CIPLREEDkVLVIASDGLWEHLSDEEVL----AFCyRYR-----ADASLAAKALVLEAARawYEKGTYRDDITVCVF 262
                 5666555428999*********666666....5553332.....3366677777766666677789********985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (322 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       376  (0.0209716); expected 358.6 (0.02)
Passed bias filter:                      339  (0.0189079); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.46u 0.26s 00:00:00.72 Elapsed: 00:00:00.42
# Mc/sec: 2320.54
//
Query:       KOO21087.1  [L=496]
Description: hypothetical protein Ctob_001427 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (496 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       496  (0.0276647); expected 358.6 (0.02)
Passed bias filter:                      263  (0.014669); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.47u 0.21s 00:00:00.68 Elapsed: 00:00:00.37
# Mc/sec: 3975.99
//
Query:       KOO21088.1  [L=479]
Description: fad fmn-binding protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.5e-08   34.3   0.0    4.8e-05   22.8   0.0    2.3  2  Oxidored_FMN    NADH:flavin oxidoreductase / NADH oxidase fam
     0.0073   15.7   3.8     0.0073   15.7   3.8    1.9  2  NMO             Nitronate monooxygenase
  ------ inclusion threshold ------
       0.16   11.8   7.6       0.38   10.6   7.6    1.6  1  Apolipoprotein  Apolipoprotein A1/A4/E domain


Domain annotation for each model (and alignments):
>> Oxidored_FMN  NADH:flavin oxidoreductase / NADH oxidase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.8   0.0     8e-09   4.8e-05       2     159 ..       3     146 ..       2     152 .. 0.77
   2 !    9.1   0.0   0.00011      0.68     272     333 ..     236     296 ..     197     303 .. 0.80

  Alignments for each domain:
  == domain 1  score: 22.8 bits;  conditional E-value: 8e-09
                   CCS-EEETT.EEESSSEEE----S-TTTTTCS.HHHHHHHHHHHHHHTT-SEEEEEEEESSCCC-SCTTSEE-SSGGGHHHHHHHHHHHHHTT-EEE CS
  Oxidored_FMN   2 LFkPikign.mtLknRivmapmtrlraldkgnvledlaaeyysqraeipvtliiteaafvnpksggfdnapgiwdeeqieewrklteavhengskvv 97 
                   +F P+++     LknR++ a++   +  +        aae   + a+++ +l+  ++++v++++++f+ +  + +++      +++ avh+ g++  
    KOO21088.1   3 VFSPLTLPCgLCLKNRLLRAAAFSGETVPA-------AAETLGEAARGGCALVTLAYTSVSADGRTFPSQFVLSEASA---PPAIAAAVHAGGALFS 89 
                   688888877678899988887766655544.......467788899**********************9988765554...45899*********** PP

                   EEEE--GGGS..SCSTCEC....SS.ESSSSSTTT-.S...CS-EE--HHHHHHHHHHHHHHHH CS
  Oxidored_FMN  98 vqlwhlGreakseyladqe..vdspsdpvaldaqeeesaeevykkeltkeeikqliqefveAAk 159
                   vql h+G  a    l+      ++ps++++l+a     +   ++ + t+ +++ l  +f+ AA+
    KOO21088.1  90 VQLTHAGSFASRALLPAGSrgPVAPSAVFDLPAL----G---WSAAATEADMARLLSDFAAAAA 146
                   **********888887766455666767777766....2...2346678888888888888876 PP

  == domain 2  score: 9.1 bits;  conditional E-value: 0.00011
                   TTTHHHCCTTHHHHHHCCCHSSEEEE-SS--SHHHHHHHHHTTS-SEEEESTHHHH-TTHHH CS
  Oxidored_FMN 272 gagsvrteqekntefvkevwkkplitvgriadeekaaeivaegeadLvamgRefladpdlve 333
                    +++ r+  e+    + e   +p+ +vg++   e  a ++ eg a  v m+R+++++pdl++
    KOO21088.1 236 LPFEPRFLAEGARAVLAEARGVPVFAVGGYVALEAVAAALGEGFA-GVQMARALIREPDLPK 296
                   566777777777788889999*************66666666555.59************96 PP

>> NMO  Nitronate monooxygenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   3.8   1.2e-06    0.0073     189     227 ..     252     290 ..     243     307 .. 0.87
   2 ?   -1.7   0.3      0.25   1.5e+03     113     148 ..     417     451 ..     380     469 .. 0.50

  Alignments for each domain:
  == domain 1  score: 15.7 bits;  conditional E-value: 1.2e-06
         NMO 189 ldavdiPviAaGGiidrrgvaaaLalGAsgvqigtrfLl 227
                 ++a  +Pv A GG +  + vaaaL  G +gvq++ +++ 
  KOO21088.1 252 AEARGVPVFAVGGYVALEAVAAALGEGFAGVQMARALIR 290
                 56777*****************************99985 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 0.25
         NMO 113 kvevvsfgfglpteevvarlkeagvvliptissvke 148
                  ++v+   +++   + + r    ++++  ++s + +
  KOO21088.1 417 SANVIAAKADAR-ADEISRMRSEIAAAAASVSEAAA 451
                 334443333333.44444444444444444333332 PP

>> Apolipoprotein  Apolipoprotein A1/A4/E domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   7.6   6.3e-05      0.38      72     189 ..     319     472 ..     318     473 .. 0.86

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 6.3e-05
                     HHHCCHHHHHHHHHHHHCHHCCHHCHCCHCHH.................................HHHHHHHHHHHHHHHHCHHHHHHH....HH CS
  Apolipoprotein  72 rqrlapyteelrerlaadaeelqeqlavyaee.................................lrerlerhvealkarlapyveelr....qk 129
                     r++l+  +++l+++ ++   el+eq+a++  +                                 + + ++ ++++  a+l+  +ee+r    + 
      KOO21088.1 319 RATLSRGLRRLNKSFEKSEVELREQIAQKTGKaiashwevarpsldevhaevsalvswrlppeqpALDDVRLAASEFAATLGISAEEARdshvST 413
                     56677778888888888888888888887777888888888888888888899999999999999999999999***************666559 PP

                     HHHHHHHHHH-----..-----SSSHHHHHHHTS-TTSHHHHHS--XXXXXXXXXXXXXX CS
  Apolipoprotein 130 laerleelkeslaphaeeveerlssrveelrekleeqaeelrerleanleelkaqlealv 189
                     +a ++  +  +++++a+e+  r++s++ ++ ++++e+a++  +rl a+  e +a  ++l+
      KOO21088.1 414 VATSANVIAAKADARADEIS-RMRSEIAAAAASVSEAAAASDRRLAAVRGEAQATAARLS 472
                     99999999999999999999.*************************99999999888776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (479 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       769  (0.0428914); expected 358.6 (0.02)
Passed bias filter:                      398  (0.0221987); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.53u 0.30s 00:00:00.83 Elapsed: 00:00:00.44
# Mc/sec: 3287.40
//
Query:       KOO21089.1  [L=381]
Description: glycerol-3-phosphate dehydrogenase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.6e-44  150.5   0.2    6.5e-44  149.7   0.2    1.4  1  NAD_Gly3P_dh_C  NAD-dependent glycerol-3-phosphate dehydrogen
    2.5e-38  131.5   0.0    6.5e-38  130.2   0.0    1.7  1  NAD_Gly3P_dh_N  NAD-dependent glycerol-3-phosphate dehydrogen


Domain annotation for each model (and alignments):
>> NAD_Gly3P_dh_C  NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  149.7   0.2   7.2e-48   6.5e-44       1     141 [.     225     377 ..     225     378 .. 0.95

  Alignments for each domain:
  == domain 1  score: 149.7 bits;  conditional E-value: 7.2e-48
                     -HHHHHHHHHHHHHHHHHHHHHHHTTH-HHHHHHHHHHHHHHHHHHHHHHTSS....GGGGGSTTTHHHHHHHHHSCT.HHHHHHHHHHC..... CS
  NAD_Gly3P_dh_C   1 DviGvelagalKNviAiaaGivdglglgdntkaalitrglaEmarlakalgak....petflglaglgDlivtctsgksRNrrfGeelgk..... 86 
                     Dv+G+el+galKNv+A++aG+vdglg+g ntkaa+i++gl+Em+++++ + ++    +etfl+++g++Dl++tc++g  RNr+++  ++k     
      KOO21089.1 225 DVAGAELCGALKNVVALGAGFVDGLGMGGNTKAAIIRIGLKEMQKFCQVFYGDrnilSETFLESCGVADLVTTCFGG--RNRKCADIFAKcikdg 317
                     9************************************************9886689999******************..*************999 PP

                     .T--HHHHHH.HHC.C--HHHHHHHHHHHHHHHTT...G.HHHHHHHHHHHS---HHHHH CS
  NAD_Gly3P_dh_C  87 .gesleeiek.eln.qvleGvetakevyellkkkgv..emplleavykilyegkspeeli 141
                       ++++ ie+ eln q+l+G+ t+k v+e ++k g   ++pl+ +++ki +eg+ p+++i
      KOO21089.1 318 tPKTWDVIEAeELNgQKLQGTGTSKDVMECIHKAGKekDFPLMVQIHKIAFEGAAPDTII 377
                     978999999889999***************99986556******************9987 PP

>> NAD_Gly3P_dh_N  NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  130.2   0.0   7.3e-42   6.5e-38       1     154 [.       4     203 ..       4     205 .. 0.98

  Alignments for each domain:
  == domain 1  score: 130.2 bits;  conditional E-value: 7.3e-42
                     -EEEE--SHHHHHHHHHHHTTT........--EEEE-S-H..............................HHHHHHHHHSSBTTTBTT----TTE CS
  NAD_Gly3P_dh_N   1 kiavlGaGswGtalAkvlaeng........hevrlwvree..............................elieeineehenvkyLpgiklpenl 57 
                     k+a++G+G+wG+a+A+ l+ n         + v +wv+ee                               l+++ine+hen  yLp+i lp ++
      KOO21089.1   4 KVALIGSGNWGSAIATKLGVNVlkpengfdPVVEMWVFEEyvkfeggkwerpargakppegktwvdegysPLTQVINEKHENIIYLPDIPLPVSI 98 
                     79***************************999*************************************99************************ PP

                     EEES-HHHHHTT--EEEE---HHHHHHHHHHHCCC--TT-EEEE---SE..ET.TTEEHHHHHHHHH-S--......EEEEESS--HHHHHTT-- CS
  NAD_Gly3P_dh_N  58 vattdlaealkgadiivlvvPsqalrevlkklkgllkkkailvsliKGi..eegtlkllsevieeelkeek......vavlsGpslAeEvakgkp 144
                     +a++d++++++ga+++++v+P+++l+  + kl+g  ++  i +sliKGi  ++g+  l+s+ ++ee+k+++      ++vl+G+++A+Evakg++
      KOO21089.1  99 HANPDIKSTVTGATMMIFVIPHNFLAPLVPKLQGAFAPGCIGISLIKGIefKDGKPILISDLLAEEMKKAEgapvvnMSVLMGANVANEVAKGDF 193
                     *************************************************8889999*************999999999***************** PP

                     EEEEEEES-H CS
  NAD_Gly3P_dh_N 145 tavviaskdk 154
                     ++++i+++d 
      KOO21089.1 194 AEATIGCTDL 203
                     *******985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (381 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       318  (0.0177366); expected 358.6 (0.02)
Passed bias filter:                      292  (0.0162865); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.48u 0.24s 00:00:00.72 Elapsed: 00:00:00.42
# Mc/sec: 2744.35
//
Query:       KOO21090.1  [L=261]
Description: peptidyl-prolyl cis-trans isomerase cwc27-like protein, partial [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    6.5e-45  153.2   0.0    8.4e-45  152.9   0.0    1.1  1  Pro_isomerase  Cyclophilin type peptidyl-prolyl cis-trans iso


Domain annotation for each model (and alignments):
>> Pro_isomerase  Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  152.9   0.0   4.7e-49   8.4e-45       2     158 .]      17     168 ..      16     168 .. 0.91

  Alignments for each domain:
  == domain 1  score: 152.9 bits;  conditional E-value: 4.7e-49
  Pro_isomerase   2 vdietsskGrivieLfadkaPktvenFlklvkegfYdgttFhRvikgfmvqgGdptgktsageqekkggesiraipdEitsklkh.krGalamart 96 
                    v ++ts  G++ ieL +++aP++++nF++l+ eg+Ydg++FhRvi++fm+q+Gdptg+++ ge  +  g    +++dE++s+l++ +rG++ama +
     KOO21090.1  17 VVVHTS-IGPLDIELWPKEAPMACRNFVQLCLEGYYDGCIFHRVIRDFMAQTGDPTGTGKGGE--SVFG---SKFKDEFHSRLRFtHRGLIAMASE 106
                    678995.**************************************************977444..2222...479*****666666*********9 PP

  Pro_isomerase  97 gkepnsagsqFfItlkeaphldgkytvFGkVv.eGmdvvekiekvetde.erpkknvkivsaev 158
                    g  p+++gsqFf+tl+ +++ld+k+t+FGkV+ +++  + + +++e+d+ +rp+ + +i+++ev
     KOO21090.1 107 G--PDTNGSQFFVTLDRCEWLDRKHTIFGKVTgNSLYNLHRFNELEVDAaDRPEFAPRIERCEV 168
                    7..8****************************99***************************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (261 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       426  (0.0237604); expected 358.6 (0.02)
Passed bias filter:                      295  (0.0164538); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.24s 00:00:00.68 Elapsed: 00:00:00.42
# Mc/sec: 1852.87
//
Query:       KOO21091.1  [L=475]
Description: meiosis-specific nuclear structural protein 1 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      3e-64  216.8 126.5      3e-64  216.8 126.5    2.1  1  TPH       Trichohyalin-plectin-homology domain


Domain annotation for each model (and alignments):
>> TPH  Trichohyalin-plectin-homology domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  216.8 126.5   1.7e-68     3e-64       1     350 [.     107     454 ..     107     458 .. 0.99

  Alignments for each domain:
  == domain 1  score: 216.8 bits;  conditional E-value: 1.7e-68
         TPH   1 lreneeelrelnskllaakvnkerdaQieekkrikaeekeeerrldemmekerekaleeeeekeeerkekrkeyrqeLeeQieereqkrqeeeeekleE 99 
                 ++e++eelr l++kl+aa++nker+ Qi+e   + a+++e e  +++ me++r++ l++e  +e  r++  ++ r+eL++Q++e+ + + e+++++l+E
  KOO21091.1 107 ICEQSEELRALEEKLKAAYMNKERECQIKESAHLIAKQAESESIMAQTMEADRQRGLQAEAYREYLRQQDGRAMRAELDKQVQEKMTLKAEAYQQFLKE 205
                 69************************************************************************************************* PP

         TPH 100 keqldeivekieeedeaeaeekkekqkelreeldefneeqkerkekekeeekeederileylkekeereeereaerkekeeekereiarlraqqekaed 198
                 ke++d++ve+i eed++e e++++k+ke++ ++d+f+ +q+e+k k++ e +ee+ +i++y++ +++re++++ er++++ +k++ +++++  ++ +++
  KOO21091.1 206 KEMVDKVVEAIIEEDRRETEARHAKEKEIKSYIDAFIVQQEEYKHKRRVEIEEENAKIRAYAEHVMAREQAMRLEREKDQNAKDAALEKISGDMAARQR 304
                 *************************************************************************************************** PP

         TPH 199 ekaerdelraklaqeeaerkwrqkereeaekkarqreelkeareeqvelkerrlaeeaereeeefervlrkqaedeekeqeeaekrrekrlehrrelek 297
                 ek+e+d+lr++l+++e e+k  qke+e++++  +qr +++ a+e q +lk  r++ee+++ee ++  +l+k+aed++ +q++a+krr+k+lehr+++e+
  KOO21091.1 305 EKDEMDNLRNELVIQETEEKILQKEKEKMARAVQQRMDIALANEYQRQLKAIRREEEKQEEEGFRVAMLAKFAEDDRLDQMNAQKRRMKQLEHRKAIEQ 403
                 *************************************************************************************************** PP

         TPH 298 qieereeqreaereeeleegealreeeeerrerieeerqklLkehlrellggl 350
                 ++e r+++ e+er +el+e+   ++ e+ r+++ieeer+++L  h+++l  gl
  KOO21091.1 404 LLELRRAKYEQERGAELQEQLNAERVEQVRQQIIEEERKRMLAAHAKNL--GL 454
                 ***********************************************99..65 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (475 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      3344  (0.186513); expected 358.6 (0.02)
Passed bias filter:                      368  (0.0205254); expected 358.6 (0.02)
Passed Vit filter:                        62  (0.00345808); expected 17.9 (0.001)
Passed Fwd filter:                        18  (0.00100396); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.96u 0.28s 00:00:01.24 Elapsed: 00:00:00.51
# Mc/sec: 2799.20
//
Query:       KOO21092.1  [L=432]
Description: DNAj-like protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.8e-24   86.5   0.0    2.5e-24   86.1   0.0    1.1  1  DnaJ_C    DnaJ C terminal domain
    2.6e-14   53.1   0.0    4.6e-14   52.3   0.0    1.4  1  DnaJ      DnaJ domain


Domain annotation for each model (and alignments):
>> DnaJ_C  DnaJ C terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   86.1   0.0   2.7e-28   2.5e-24      12     148 .]     214     414 ..     211     414 .. 0.95

  Alignments for each domain:
  == domain 1  score: 86.1 bits;  conditional E-value: 2.7e-28
                 HHH-.EEE.EEEE............................................................TEEEEEE-TT--TT-EEEETT-SSSS CS
                 xxxxxxxxxxxxxxxx.....................................................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
      DnaJ_C  12 lykGktkkikikrnvi.....................................................kkekktlevkipaGikdgqkirlegeGdee 57 
                 +y+G++k ++i+r+v                                                      ++++++lev++ +G+ dg+ ++++   +++
  KOO21092.1 214 VYTGVHKSLTITRRVVckgcgkgatpsarssrrcarcgecpaeirpvnvqlapgfviqqqqevpsdercEQRQRQLEVRVLRGMADGDVLTFSRASEQR 312
                 79***********999***************************************************98777889**********************99 PP

                 ...S---EEEEEEE---SS-EEETTEEEEEEEEEHHHHHHTEEEEEE-SS-EEEE....EE--TT-EEEETT-S-EET.........TEE--EEEEEEE CS
                 x.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx....xxxxxxxxxxxxxxxxxxxx......xxxxxxxxxxxxxx RF
      DnaJ_C  58 g.gepGDlivtikvkphpvFkrkgndlyveveislaeallGgklevptldgkvkl....kitqpgevlrikgkGmpklk......kpgkrGdlyvevkv 145
                 + + pGD+ +++kv ++p+Fkr g+ l+++++++l++allG + +++ ldg+v       ++qpgevl+++g+Gmp  +       +g  G l+v++ v
  KOO21092.1 313 PgMIPGDVKLKLKVISDPRFKRVGQALHTSMHLTLRQALLGFNSTLSHLDGHVVAlsrhGVSQPGEVLKVEGEGMPEREredegeANGAAGALHVKIFV 411
                 99***********99**************************9999999*999887788888*****************99999999999********** PP

                 E-- CS
                 xxx RF
      DnaJ_C 146 efP 148
                 +fP
  KOO21092.1 412 DFP 414
                 **9 PP

>> DnaJ  DnaJ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.3   0.0   5.2e-18   4.6e-14       2      63 .]     120     189 ..     119     189 .. 0.89

  Alignments for each domain:
  == domain 1  score: 52.3 bits;  conditional E-value: 5.2e-18
                 HHHHHTSSTT.....G-HHHHHHHHHHHHHHHSTTTSCCHH...HHHHHHHHHHHHHHHHTSHHHHHHHH CS
        DnaJ   2 yYeiLgvskd.....asedeIkkaYrklalkyHPDknpkdp...eaeekFkeineAyevLsdpekRkqYD 63 
                 +Ye+Lg++++      +e+ Ik+++r+l+lk+HPDk++  +    a+++F e+ +Ay+vL  p+ R  YD
  KOO21092.1 120 LYEVLGLPEEggdggVNEQAIKQSFRRLSLKLHPDKQRTAEqreFAARRFAEVRAAYDVLAAPDARILYD 189
                 7*********8887778999***************9944333458999*********************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (432 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       486  (0.0271069); expected 358.6 (0.02)
Passed bias filter:                      278  (0.0155056); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.47u 0.24s 00:00:00.71 Elapsed: 00:00:00.40
# Mc/sec: 3207.27
//
Query:       KOO21093.1  [L=478]
Description: calmodulin-like protein 1 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.5e-28   96.2   6.2    1.5e-07   30.5   0.3    4.4  4  EF-hand_1       EF hand
      1e-24   86.8   1.8    6.6e-11   42.5   0.0    3.1  3  EF-hand_7       EF-hand domain pair
    1.5e-22   78.0   5.2    0.00011   21.5   0.4    4.6  4  EF-hand_5       EF hand
    5.1e-20   69.6   0.3     0.0031   17.3   0.0    4.5  4  EF-hand_6       EF-hand domain
    4.2e-16   58.5   9.1      4e-07   29.8   0.2    4.3  4  EF-hand_8       EF-hand domain pair
    1.8e-08   34.5   0.7    0.00031   21.0   0.0    2.6  2  EF-hand_9       EF-hand domain
    1.7e-07   31.2   0.3       0.01   15.8   0.0    3.2  3  EF-hand_4       Cytoskeletal-regulatory complex EF hand
    2.3e-06   27.9   0.0      0.054   13.8   0.0    2.4  2  SPARC_Ca_bdg    Secreted protein acidic and rich in cysteine 
    8.2e-05   22.7   2.5       0.21   11.8   0.4    3.0  3  Dockerin_1      Dockerin type I domain
  ------ inclusion threshold ------
       0.02   15.0   0.0       0.31   11.2   0.0    2.3  2  p25-alpha       p25-alpha
       0.11   12.2   0.3         60    3.5   0.1    3.7  3  AP_endonuc_2_N  AP endonuclease family 2 C terminus
       0.41   10.5   1.0         59    3.6   0.0    3.2  4  EF-hand_10      EF hand
        4.2    7.8   5.5         12    6.3   0.8    3.3  2  DUF4440         Domain of unknown function (DUF4440)


Domain annotation for each model (and alignments):
>> EF-hand_1  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.3   0.0   1.9e-07   0.00026       2      26 ..      85     109 ..      84     112 .. 0.90
   2 !   30.5   0.3   1.1e-10   1.5e-07       2      28 ..     122     148 ..     121     149 .. 0.95
   3 !   20.0   0.0   2.3e-07   0.00032       2      26 ..     270     294 ..     269     297 .. 0.90
   4 !   25.9   0.2   3.2e-09   4.4e-06       2      28 ..     311     337 ..     310     338 .. 0.93

  Alignments for each domain:
  == domain 1  score: 20.3 bits;  conditional E-value: 1.9e-07
                 HHHHHHHHTTTSSSEEEHHHHHHHH CS
   EF-hand_1   2 lkeiFrefDkDgdGkIdfeEfkell 26 
                 l+ +F+++D+D++Gk++  E+k+++
  KOO21093.1  85 LEAAFEKVDTDKSGKLSAAEMKAYI 109
                 689******************9876 PP

  == domain 2  score: 30.5 bits;  conditional E-value: 1.1e-10
                 HHHHHHHHTTTSSSEEEHHHHHHHHHH CS
   EF-hand_1   2 lkeiFrefDkDgdGkIdfeEfkellkk 28 
                 ++e+++ +D+DgdG Id++Efk ++++
  KOO21093.1 122 IDEMMAAADTDGDGEIDLSEFKVIMRA 148
                 89***********************86 PP

  == domain 3  score: 20.0 bits;  conditional E-value: 2.3e-07
                 HHHHHHHHTTTSSSEEEHHHHHHHH CS
   EF-hand_1   2 lkeiFrefDkDgdGkIdfeEfkell 26 
                 l+ +F+++D+D dGkI+  E+k+++
  KOO21093.1 270 LEAAFAKVDTDEDGKINTAEMKAYI 294
                 689******************9876 PP

  == domain 4  score: 25.9 bits;  conditional E-value: 3.2e-09
                 HHHHHHHHTTTSSSEEEHHHHHHHHHH CS
   EF-hand_1   2 lkeiFrefDkDgdGkIdfeEfkellkk 28 
                 + e+++ +D+++dGk++++Efk ++++
  KOO21093.1 311 IGEMIAAADTNKDGKMSIDEFKVIMRA 337
                 679**********************86 PP

>> EF-hand_7  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.7   0.0   1.3e-06    0.0018      32      70 ..      71     109 ..      56     110 .. 0.85
   2 !   39.2   0.2   5.3e-13   7.3e-10       4      71 .]      85     147 ..      82     147 .. 0.91
   3 !   42.5   0.0   4.8e-14   6.6e-11       2      71 .]     268     336 ..     236     336 .. 0.95

  Alignments for each domain:
  == domain 1  score: 18.7 bits;  conditional E-value: 1.3e-06
   EF-hand_7  32 fqgagegsklsdeelellfkefDtdkdGvisfdEFlkly 70 
                  + +geg ++sd  le+ f+++Dtdk+G++s  E+++++
  KOO21093.1  71 QAVFGEGIDKSDAGLEAAFEKVDTDKSGKLSAAEMKAYI 109
                 33449999999999*********************9875 PP

  == domain 2  score: 39.2 bits;  conditional E-value: 5.3e-13
   EF-hand_7   4 lkeaFkelDtdgdgyldkeellrllrkifqgagegsklsdeelellfkefDtdkdGvisfdEFlklyr 71 
                 l+ aF++ Dtd++g+l+ +e++ ++ +        + l d+ +++++   Dtd+dG+i+++EF+ ++r
  KOO21093.1  85 LEAAFEKVDTDKSGKLSAAEMKAYILS-----MYPKGLEDQVIDEMMAAADTDGDGEIDLSEFKVIMR 147
                 6789******************76666.....7788889999**********************9996 PP

  == domain 3  score: 42.5 bits;  conditional E-value: 4.8e-14
   EF-hand_7   2 eklkeaFkelDtdgdgyldkeellrllrkifqgagegsklsdeelellfkefDtdkdGvisfdEFlklyr 71 
                 e l+ aF + Dtd dg+++ +e++ ++ +++++ g  + l+d+++ +++   Dt+kdG++s dEF+ ++r
  KOO21093.1 268 EGLEAAFAKVDTDEDGKINTAEMKAYILSLYSK-GYPDGLDDQKIGEMIAAADTNKDGKMSIDEFKVIMR 336
                 568889******************999999888.999999**************************9996 PP

>> EF-hand_5  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.1   0.0   1.1e-07   0.00015       1      23 [.      85     107 ..      85     110 .. 0.91
   2 !   21.5   0.4     8e-08   0.00011       2      24 ..     123     145 ..     122     146 .. 0.86
   3 !   17.6   0.0   1.3e-06    0.0019       1      23 [.     270     292 ..     270     295 .. 0.90
   4 !   16.7   0.1   2.6e-06    0.0036       5      24 ..     315     334 ..     311     335 .. 0.85

  Alignments for each domain:
  == domain 1  score: 21.1 bits;  conditional E-value: 1.1e-07
                 HHHHHHHH-SS-SSCE-HHHHHH CS
   EF-hand_5   1 lkdtFqaiDlNgDGkIskeELkt 23 
                 l+++F+++D++++Gk+s+ E k+
  KOO21093.1  85 LEAAFEKVDTDKSGKLSAAEMKA 107
                 6789****************986 PP

  == domain 2  score: 21.5 bits;  conditional E-value: 8e-08
                 HHHHHHH-SS-SSCE-HHHHHHH CS
   EF-hand_5   2 kdtFqaiDlNgDGkIskeELktl 24 
                 +++  a+D++gDG I+ +E+k +
  KOO21093.1 123 DEMMAAADTDGDGEIDLSEFKVI 145
                 567889**************975 PP

  == domain 3  score: 17.6 bits;  conditional E-value: 1.3e-06
                 HHHHHHHH-SS-SSCE-HHHHHH CS
   EF-hand_5   1 lkdtFqaiDlNgDGkIskeELkt 23 
                 l+++F ++D++ DGkI+  E k+
  KOO21093.1 270 LEAAFAKVDTDEDGKINTAEMKA 292
                 6789**************99885 PP

  == domain 4  score: 16.7 bits;  conditional E-value: 2.6e-06
                 HHHH-SS-SSCE-HHHHHHH CS
   EF-hand_5   5 FqaiDlNgDGkIskeELktl 24 
                   a+D+N+DGk s++E+k +
  KOO21093.1 315 IAAADTNKDGKMSIDEFKVI 334
                 679**************975 PP

>> EF-hand_6  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   0.0   2.3e-06    0.0031       2      26 ..      85     109 ..      84     116 .. 0.87
   2 !   17.2   0.1   2.4e-06    0.0033       8      29 ..     128     148 ..     122     155 .. 0.87
   3 !   15.0   0.0   1.2e-05     0.017       2      26 ..     270     294 ..     269     299 .. 0.88
   4 !   14.4   0.0   1.9e-05     0.027       9      29 ..     318     337 ..     311     344 .. 0.90

  Alignments for each domain:
  == domain 1  score: 17.3 bits;  conditional E-value: 2.3e-06
   EF-hand_6   2 lreaFklfDkdgdGkidaeElrkal 26 
                 l++aF++ D+d++Gk++a+E+++ +
  KOO21093.1  85 LEAAFEKVDTDKSGKLSAAEMKAYI 109
                 678******************9843 PP

  == domain 2  score: 17.2 bits;  conditional E-value: 2.4e-06
   EF-hand_6   8 lfDkdgdGkidaeElrkalrka 29 
                 + D+dgdG+id +E++ ++r a
  KOO21093.1 128 AADTDGDGEIDLSEFKVIMR-A 148
                 67*****************9.4 PP

  == domain 3  score: 15.0 bits;  conditional E-value: 1.2e-05
   EF-hand_6   2 lreaFklfDkdgdGkidaeElrkal 26 
                 l++aF + D+d dGki+++E+++ +
  KOO21093.1 270 LEAAFAKVDTDEDGKINTAEMKAYI 294
                 678******************9854 PP

  == domain 4  score: 14.4 bits;  conditional E-value: 1.9e-05
   EF-hand_6   9 fDkdgdGkidaeElrkalrka 29 
                  D+++dGk +++E++ ++r a
  KOO21093.1 318 ADTNKDGKMSIDEFKVIMR-A 337
                 6*****************9.4 PP

>> EF-hand_8  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.1   0.0    0.0017       2.3      29      49 ..      86     106 ..      72     110 .. 0.84
   2 !   29.8   0.2   2.9e-10     4e-07       2      52 ..      97     146 ..      96     148 .. 0.91
   3 !   10.6   0.1   0.00028      0.39      25      50 ..     267     292 ..     254     297 .. 0.83
   4 !   18.2   0.1   1.2e-06    0.0016      15      52 ..     299     335 ..     294     337 .. 0.88

  Alignments for each domain:
  == domain 1  score: 8.1 bits;  conditional E-value: 0.0017
   EF-hand_8  29 dilfrefDtdgdGkisfeEFc 49 
                 ++ f ++Dtd++Gk+s  E  
  KOO21093.1  86 EAAFEKVDTDKSGKLSAAEMK 106
                 67899***********88865 PP

  == domain 2  score: 29.8 bits;  conditional E-value: 2.9e-10
   EF-hand_8   2 kgkItreelrril.rilglkkglseeevdilfrefDtdgdGkisfeEFcvll 52 
                 +gk++ +e++  + +  +++kgl ++ +d+++ ++DtdgdG i++ EF v +
  KOO21093.1  97 SGKLSAAEMKAYIlS--MYPKGLEDQVIDEMMAAADTDGDGEIDLSEFKVIM 146
                 7999*******8866..77889**************************9977 PP

  == domain 3  score: 10.6 bits;  conditional E-value: 0.00028
   EF-hand_8  25 eeevdilfrefDtdgdGkisfeEFcv 50 
                 +e +++ f ++Dtd+dGki+  E  +
  KOO21093.1 267 DEGLEAAFAKVDTDEDGKINTAEMKA 292
                 444788999***********988665 PP

  == domain 4  score: 18.2 bits;  conditional E-value: 1.2e-06
   EF-hand_8  15 rilglkkglseeevdilfrefDtdgdGkisfeEFcvll 52 
                 ++ g+++gl ++++ +++ ++Dt++dGk s +EF v +
  KOO21093.1 299 SK-GYPDGLDDQKIGEMIAAADTNKDGKMSIDEFKVIM 335
                 44.78889**************************9977 PP

>> EF-hand_9  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.0   0.0   2.3e-07   0.00031       2      63 ..      87     147 ..      86     149 .. 0.95
   2 !   11.5   0.0    0.0002      0.28       2      63 ..     272     336 ..     271     338 .. 0.80

  Alignments for each domain:
  == domain 1  score: 21.0 bits;  conditional E-value: 2.3e-07
   EF-hand_9   2 tvFevcDtqktGrVpvsrlidyLravtaqdpeeseLeelakelDPdgedasvdldtflrvmr 63 
                 + Fe  Dt+k G+   +++++y   +  +  e+  ++e  + +D dg  +++dl+ f+++mr
  KOO21093.1  87 AAFEKVDTDKSGKLSAAEMKAYILSMYPKGLEDQVIDEMMAAADTDGD-GEIDLSEFKVIMR 147
                 7899******************9999999******************9.************9 PP

  == domain 2  score: 11.5 bits;  conditional E-value: 0.0002
   EF-hand_9   2 tvFevcDtqktGrVpvsrlidyLravtaq.dpees...eLeelakelDPdgedasvdldtflrvmr 63 
                 + F   Dt++ G++  +++++y     ++  p  +   ++ e  + +D +  d+++ +d f+++mr
  KOO21093.1 272 AAFAKVDTDEDGKINTAEMKAYILSLYSKgYPDGLddqKIGEMIAAADTNK-DGKMSIDEFKVIMR 336
                 679999***************976666654343223359*********665.5************9 PP

>> EF-hand_4  Cytoskeletal-regulatory complex EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.0   7.3e-06      0.01      38      70 ..     115     147 ..      84     149 .. 0.83
   2 ?    0.5   0.0      0.43   5.9e+02      39      65 ..     264     290 ..     246     298 .. 0.81
   3 !   10.7   0.0   0.00027      0.37      40      70 ..     306     336 ..     302     338 .. 0.93

  Alignments for each domain:
  == domain 1  score: 15.8 bits;  conditional E-value: 7.3e-06
   EF-hand_4  38 skleedklekiwdladidedgkldfeefciamr 70 
                   le++ ++++   ad d dg++d+ ef ++mr
  KOO21093.1 115 KGLEDQVIDEMMAAADTDGDGEIDLSEFKVIMR 147
                 569999**************************9 PP

  == domain 2  score: 0.5 bits;  conditional E-value: 0.43
   EF-hand_4  39 kleedklekiwdladidedgkldfeef 65 
                   +++ le  +   d dedgk++  e+
  KOO21093.1 264 DKSDEGLEAAFAKVDTDEDGKINTAEM 290
                 55678899999999*******987775 PP

  == domain 3  score: 10.7 bits;  conditional E-value: 0.00027
   EF-hand_4  40 leedklekiwdladidedgkldfeefciamr 70 
                 l+++k+ ++   ad ++dgk+  +ef ++mr
  KOO21093.1 306 LDDQKIGEMIAAADTNKDGKMSIDEFKVIMR 336
                 88999999**********************9 PP

>> SPARC_Ca_bdg  Secreted protein acidic and rich in cysteine Ca binding region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.8   0.0   3.9e-05     0.054      58     110 ..      87     142 ..      72     144 .. 0.88
   2 !   11.5   0.0    0.0002      0.28      41     110 ..     255     331 ..     237     333 .. 0.82

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 3.9e-05
  SPARC_Ca_bdg  58 wkFsklDtnsdkvlsksELaplraplvkl...ehCikpflescDadkdkkislkEw 110
                     F+k+Dt++ + ls +E+++  +++ +    ++ i++++ ++D+d d++i+l+E+
    KOO21093.1  87 AAFEKVDTDKSGKLSAAEMKAYILSMYPKgleDQVIDEMMAAADTDGDGEIDLSEF 142
                   57*******************9999987433389*********************9 PP

  == domain 2  score: 11.5 bits;  conditional E-value: 0.0002
  SPARC_Ca_bdg  41 ekkeeeknlkeckepvawkFsklDtnsdkvlsksELaplraplvkl.......ehCikpflescDadkdkkislkEw 110
                    +  + +n ++  e ++  F k+Dt++d+ ++++E+++  ++l +        ++ i +++ ++D++kd+k+s  E+
    KOO21093.1 255 LQAVFGENIDKSDEGLEAAFAKVDTDEDGKINTAEMKAYILSLYSKgypdgldDQKIGEMIAAADTNKDGKMSIDEF 331
                   5566777888888999999******************999999764333333378999*****************98 PP

>> Dockerin_1  Dockerin type I domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.6   0.1   0.00075         1      15      52 ..     102     144 ..      91     148 .. 0.81
   2 ?    2.6   0.1      0.11   1.6e+02      35      48 ..     275     288 ..     262     297 .. 0.75
   3 !   11.8   0.4   0.00015      0.21       3      46 ..     278     327 ..     276     337 .. 0.84

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 0.00075
                 HHHHHHHCT.....SSEBTTSCCCHGGGSTT-SSCESHHHHHH CS
  Dockerin_1  15 alliinyln.....qregqssssngkaaDvNgDGrvnalDall 52 
                 a+ ++ y++       e+q  +++ +aaD +gDG+++   + +
  KOO21093.1 102 AAEMKAYILsmypkGLEDQVIDEMMAAADTDGDGEIDLSEFKV 144
                 567788888888887789999***************9776665 PP

  == domain 2  score: 2.6 bits;  conditional E-value: 0.11
                 GGGSTT-SSCESHH CS
  Dockerin_1  35 kaaDvNgDGrvnal 48 
                 ++ D ++DG++n  
  KOO21093.1 275 AKVDTDEDGKINTA 288
                 67888999999865 PP

  == domain 3  score: 11.8 bits;  conditional E-value: 0.00015
                 ETTSSSC-SHHHHHHHHHHCT.........SSEBTTSCCCHGGGSTT-SSCES CS
  Dockerin_1   3 DVNgDgkVnalDalliinyln.........qregqssssngkaaDvNgDGrvn 46 
                 D ++Dgk+n    + ++ y++           ++q+  ++ +aaD N+DG+++
  KOO21093.1 278 DTDEDGKINT---AEMKAYILslyskgypdGLDDQKIGEMIAAADTNKDGKMS 327
                 8999999996...67788888888****99788999***************97 PP

>> p25-alpha  p25-alpha
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.3   0.0      0.25   3.4e+02      45      85 ..      86     126 ..      73     163 .. 0.75
   2 ?   11.2   0.0   0.00022      0.31      45      94 ..     271     318 ..     257     373 .. 0.82

  Alignments for each domain:
  == domain 1  score: 1.3 bits;  conditional E-value: 0.25
   p25-alpha  45 DiiFsKvkaksarkitfeqfkealeelaekkfkkkkkeeel 85 
                 + +F+Kv + ++ k++ +++k+ +  +  k  ++++ +e +
  KOO21093.1  86 EAAFEKVDTDKSGKLSAAEMKAYILSMYPKGLEDQVIDEMM 126
                 56899999999999999999999999998877666655544 PP

  == domain 2  score: 11.2 bits;  conditional E-value: 0.00022
   p25-alpha  45 DiiFsKvkaksarkitfeqfkealeelaekkfkkkkkeeelelieklieg 94 
                 + +F+Kv + ++ ki+ +++k+ +  l +k ++++ +++++   e+++++
  KOO21093.1 271 EAAFAKVDTDEDGKINTAEMKAYILSLYSKGYPDGLDDQKI--GEMIAAA 318
                 679**********************************9999..3333333 PP

>> AP_endonuc_2_N  AP endonuclease family 2 C terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.3   0.0       0.1   1.4e+02      26      49 ..      27      49 ..      25      53 .. 0.75
   2 ?    3.5   0.1     0.044        60      26      49 ..     205     228 ..     203     233 .. 0.76
   3 ?    1.6   0.0      0.17   2.3e+02      29      45 ..     397     413 ..     393     416 .. 0.82

  Alignments for each domain:
  == domain 1  score: 2.3 bits;  conditional E-value: 0.1
  AP_endonuc_2_N 26 lmsreeGareAvaflkdklliees 49
                     +    G++ ++ f+++k+ + ++
      KOO21093.1 27 TKAVGTGLENGATFVDQKI-VAPT 49
                    566778**********988.5555 PP

  == domain 2  score: 3.5 bits;  conditional E-value: 0.044
  AP_endonuc_2_N  26 lmsreeGareAvaflkdklliees 49 
                      +    G++ ++ f+++k++++ +
      KOO21093.1 205 AKAVATGLENGATFIDEKIVVPAA 228
                     567789**********99865543 PP

  == domain 3  score: 1.6 bits;  conditional E-value: 0.17
  AP_endonuc_2_N  29 reeGareAvaflkdkll 45 
                       +Ga+ ++ f+++k++
      KOO21093.1 397 VVDGANNGATFIDEKIV 413
                     568**********9874 PP

>> EF-hand_10  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.6   0.0     0.043        59      24      46 ..      86     108 ..      78     112 .. 0.83
   2 ?   -2.4   0.0       3.2   4.4e+03      28      45 ..     127     144 ..     117     147 .. 0.75
   3 ?    3.3   0.1     0.055        75      15      47 ..     262     294 ..     258     297 .. 0.90
   4 ?   -0.9   0.0       1.1   1.5e+03       1      12 [.     325     336 ..     315     337 .. 0.79

  Alignments for each domain:
  == domain 1  score: 3.6 bits;  conditional E-value: 0.043
  EF-hand_10  24 ekLFkkcDkSksgrLegeEieeF 46 
                 e  F k D+ ksg+L   E++ +
  KOO21093.1  86 EAAFEKVDTDKSGKLSAAEMKAY 108
                 56699**************9876 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 3.2
  EF-hand_10  28 kkcDkSksgrLegeEiee 45 
                   +D+  +g ++ +E++ 
  KOO21093.1 127 AAADTDGDGEIDLSEFKV 144
                 568999999999999875 PP

  == domain 3  score: 3.3 bits;  conditional E-value: 0.055
  EF-hand_10  15 NievddeYAekLFkkcDkSksgrLegeEieeFy 47 
                 Ni+ +de  e  F k D+ ++g+++  E++ + 
  KOO21093.1 262 NIDKSDEGLEAAFAKVDTDEDGKINTAEMKAYI 294
                 899999999999****************99875 PP

  == domain 4  score: -0.9 bits;  conditional E-value: 1.1
  EF-hand_10   1 kmsfkEvkrlLr 12 
                 kms +E k ++r
  KOO21093.1 325 KMSIDEFKVIMR 336
                 788888887665 PP

>> DUF4440  Domain of unknown function (DUF4440)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.3   0.8    0.0088        12      64      85 ..     172     193 ..      78     203 .. 0.82
   2 ?    1.9   0.3      0.21   2.9e+02      50      84 ..     347     381 ..     311     407 .. 0.79

  Alignments for each domain:
  == domain 1  score: 6.3 bits;  conditional E-value: 0.0088
                 EEEETTEEEEEEEEEEEECCTT CS
     DUF4440  64 vrvlgdlAvvtgrytfegrgdg 85 
                 v+ +gd+A+v+g+ tf+g ++g
  KOO21093.1 172 VKAVGDGAAVVGTATFDGAKAG 193
                 7789**************9999 PP

  == domain 2  score: 1.9 bits;  conditional E-value: 0.21
                 CHCEEEEEEEEEEEEEEETTEEEEEEEEEEEECCT CS
     DUF4440  50 gfaagrslelteeevrvlgdlAvvtgrytfegrgd 84 
                 g+a + s++ t   v+ +gd+A+ +g+ t +g ++
  KOO21093.1 347 GGAVDASIAATVGGVKATGDGAAYVGTATLDGAKA 381
                 455667888888899999*********99988654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (478 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       413  (0.0230353); expected 358.6 (0.02)
Passed bias filter:                      199  (0.0110993); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                        14  (0.000780858); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 0.52u 0.26s 00:00:00.78 Elapsed: 00:00:00.42
# Mc/sec: 3446.98
//
Query:       KOO21094.1  [L=483]
Description: NHL repeat containing protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.4e-42  140.4   8.1    2.1e-08   33.8   0.0    5.5  5  NHL             NHL repeat
    6.1e-20   71.9  13.3    0.00016   21.4   0.1    5.2  5  SGL             SMP-30/Gluconolactonase/LRE-like region
    1.1e-19   70.6   0.1    1.9e-19   69.9   0.1    1.4  1  BTB             BTB/POZ domain
    1.3e-12   47.7   5.3      0.013   14.7   0.1    4.7  5  DUF839          Bacterial protein of unknown function (DUF839
    5.5e-07   29.8   0.1      0.064   13.2   0.0    4.0  4  Phytase-like    Esterase-like activity of phytase
     0.0083   16.1   0.1        1.5    8.8   0.0    2.8  2  Tcp10_C         T-complex protein 10 C-terminus
  ------ inclusion threshold ------
      0.013   15.5   5.0         15    5.7   0.0    4.9  5  SBBP            Beta-propeller repeat
      0.015   14.6   0.1        7.7    5.7   0.0    3.0  3  SdiA-regulated  SdiA-regulated
      0.081   13.4   4.2         36    5.0   0.0    4.9  5  Ldl_recept_b    Low-density lipoprotein receptor repeat class


Domain annotation for each model (and alignments):
>> NHL  NHL repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.2   0.1   1.3e-09   2.5e-06       1      27 [.      37      63 ..      37      64 .. 0.96
   2 !   28.7   0.0   4.5e-10   8.9e-07       1      27 [.      93     119 ..      93     120 .. 0.96
   3 !   25.5   0.1   4.4e-09   8.7e-06       1      27 [.     149     175 ..     149     176 .. 0.95
   4 !   33.8   0.0     1e-11   2.1e-08       1      27 [.     205     231 ..     205     232 .. 0.96
   5 !   26.4   0.1   2.4e-09   4.7e-06       1      27 [.     261     287 ..     261     288 .. 0.92

  Alignments for each domain:
  == domain 1  score: 27.2 bits;  conditional E-value: 1.3e-09
                BSSEEEEEEETTTEEEEEECCCTEEEE CS
         NHL  1 fnyPhGvavdsnGdiyVaDsenhrvqv 27
                f++P+Gva+d  G+++ aDs nh++++
  KOO21094.1 37 FRSPAGVAIDVEGNLILADSDNHCIRK 63
                899**********************86 PP

  == domain 2  score: 28.7 bits;  conditional E-value: 4.5e-10
                 BSSEEEEEEETTTEEEEEECCCTEEEE CS
         NHL   1 fnyPhGvavdsnGdiyVaDsenhrvqv 27 
                 f++P+Gva+d  G+i+VaD++n ++++
  KOO21094.1  93 FYWPEGVAIDAEGNIIVADRNNYCIRK 119
                 899**********************86 PP

  == domain 3  score: 25.5 bits;  conditional E-value: 4.4e-09
                 BSSEEEEEEETTTEEEEEECCCTEEEE CS
         NHL   1 fnyPhGvavdsnGdiyVaDsenhrvqv 27 
                 fn+P+Gva+d  G+++VaDs+n ++++
  KOO21094.1 149 FNWPAGVAIDAEGNLIVADSGNDCIRK 175
                 99********************99985 PP

  == domain 4  score: 33.8 bits;  conditional E-value: 1e-11
                 BSSEEEEEEETTTEEEEEECCCTEEEE CS
         NHL   1 fnyPhGvavdsnGdiyVaDsenhrvqv 27 
                 f+ P+Gva+d  G+i+VaDs+nh++++
  KOO21094.1 205 FRGPEGVAIDAEGNIIVADSGNHCIRK 231
                 899**********************86 PP

  == domain 5  score: 26.4 bits;  conditional E-value: 2.4e-09
                 BSSEEEEEEETTTEEEEEECCCTEEEE CS
         NHL   1 fnyPhGvavdsnGdiyVaDsenhrvqv 27 
                 f  P +va+d +G ++VaD+enh++++
  KOO21094.1 261 FDGPYSVAIDADGSVLVADNENHCIRK 287
                 677889*******************97 PP

>> SGL  SMP-30/Gluconolactonase/LRE-like region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.7   0.0   1.8e-05     0.035     176     217 ..      27      71 ..       9      75 .. 0.80
   2 !   18.2   0.1   7.4e-07    0.0015     176     217 ..      83     127 ..      71     133 .. 0.82
   3 !   17.5   0.1   1.2e-06    0.0023     181     217 ..     144     183 ..     129     187 .. 0.81
   4 !   21.4   0.1     8e-08   0.00016     176     216 ..     195     238 ..     185     242 .. 0.82
   5 !    7.3   0.1    0.0015         3     176     214 ..     251     292 ..     239     298 .. 0.76

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 1.8e-05
         SGL 176 fadlkkge...gepDGlavDaeGnvwvAvwgggkvvrfdpdGkli 217
                 fad++ ++     p G+a+D eGn++ A  +++++++++pdG++ 
  KOO21094.1  27 FADGAAADarfRSPAGVAIDVEGNLILADSDNHCIRKVTPDGTVR 71 
                 555555555555599***************************975 PP

  == domain 2  score: 18.2 bits;  conditional E-value: 7.4e-07
         SGL 176 fadlkkge...gepDGlavDaeGnvwvAvwgggkvvrfdpdGkli 217
                 fad++ ++     p G+a+DaeGn++vA  ++ ++++++pdG++ 
  KOO21094.1  83 FADGAAADarfYWPEGVAIDAEGNIIVADRNNYCIRKVTPDGTVS 127
                 666666665544499***************************975 PP

  == domain 3  score: 17.5 bits;  conditional E-value: 1.2e-06
         SGL 181 kge...gepDGlavDaeGnvwvAvwgggkvvrfdpdGkli 217
                  ++   + p G+a+DaeGn++vA  g++++++++pdG++ 
  KOO21094.1 144 AAGarfNWPAGVAIDAEGNLIVADSGNDCIRKVTPDGTVR 183
                 4444433588***************************975 PP

  == domain 4  score: 21.4 bits;  conditional E-value: 8e-08
         SGL 176 fadlkkge...gepDGlavDaeGnvwvAvwgggkvvrfdpdGkl 216
                 fad++ ++     p G+a+DaeGn++vA  g++++++++pdG++
  KOO21094.1 195 FADGAAADarfRGPEGVAIDAEGNIIVADSGNHCIRKVTPDGTV 238
                 55555555555339****************************97 PP

  == domain 5  score: 7.3 bits;  conditional E-value: 0.0015
         SGL 176 fadlkkgegepDG...lavDaeGnvwvAvwgggkvvrfdpdG 214
                 fad++ ++ ++DG   +a+Da+G v vA  ++++++++++ G
  KOO21094.1 251 FADGAAADARFDGpysVAIDADGSVLVADNENHCIRKLTNCG 292
                 6666666655555444899***********999999998766 PP

>> BTB  BTB/POZ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.9   0.1   9.5e-23   1.9e-19       6     107 ..     315     414 ..     310     418 .. 0.90

  Alignments for each domain:
  == domain 1  score: 69.9 bits;  conditional E-value: 9.5e-23
                 HHTTTS-EEEEETTTEEEEE-HHHHHHH-HHHHHHHTSTTTTTCCCEEEEETTSGHHHHHHHHHHHHHSEEEC-CGGGHHHHHHHHHHHT-HHHHHHHH CS
         BTB   6 esgelcDvtlvvgdgkefkahkavLaarSpyFkalftskeieessvseielddvepeafealLefiYtgeleitseenleelLaaadllqiprlkkace 104
                   +++ Dvt+ v+ g ++ ah+avL +rS yF+ +f s   e++   +i +   ++ af++lL ++Y++ le++ ++ + ++++ a+ +q+ r  ++c 
  KOO21094.1 315 ADDAFADVTFEVE-GARITAHRAVLVSRSAYFRGMFMSPCRETRPGAVIVVHGTTSAAFRSLLAYLYSDSLELD-DDVVIDVMQKAREYQLTRAFNMCV 411
                 45689********.9************************33455555899***********************7.***********************9 PP

                 HHH CS
         BTB 105 efl 107
                 +++
  KOO21094.1 412 RYC 414
                 987 PP

>> DUF839  Bacterial protein of unknown function (DUF839)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.6   0.0   5.5e-05      0.11     412     476 ..      14      75 ..       2      79 .. 0.81
   2 !   12.8   0.0   2.4e-05     0.048     417     489 ..      75     145 ..      72     147 .. 0.76
   3 !   12.1   0.2     4e-05      0.08     423     477 ..     137     188 ..     130     194 .. 0.83
   4 !   14.7   0.1   6.3e-06     0.013     416     478 ..     186     245 ..     181     261 .. 0.81
   5 ?    0.5   0.0      0.13   2.6e+02     422     463 ..     248     289 ..     242     302 .. 0.75

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 5.5e-05
      DUF839 412 lfllaGdpedakaasaessegndlespDnlafdpaGrlwiatDgsgskdellgvtaeGkvynlar 476
                 + + +G  e ++ +  +  +++ ++sp ++a+d +G+l++a+  ++    ++ vt++G v +la+
  KOO21094.1  14 VSVFSGSREGENGFADGAAADARFRSPAGVAIDVEGNLILADSDNH---CIRKVTPDGTVRTLAG 75 
                 456677766677799999********************99854444...5789*******99986 PP

  == domain 2  score: 12.8 bits;  conditional E-value: 2.4e-05
      DUF839 417 GdpedakaasaessegndlespDnlafdpaGrlwiatDgsgskdellgvtaeGkvynlarn.dGnnvltsdaar 489
                 G  e +k +  +  +++ +  p ++a+d++G++++a D+++    ++ vt++G v++la+  +G+n ++++aa+
  KOO21094.1  75 GSREGEKGFADGAAADARFYWPEGVAIDAEGNIIVA-DRNNY--CIRKVTPDGTVSTLAGSrEGENGFADGAAA 145
                 655666668889999*****************9887.66663..4789*********99651577666666655 PP

  == domain 3  score: 12.1 bits;  conditional E-value: 4e-05
      DUF839 423 kaasaessegndlespDnlafdpaGrlwiatDgsgskdellgvtaeGkvynlarn 477
                 + +  +  +g+ ++ p ++a+d++G+l++a+ g++    ++ vt++G v +la+ 
  KOO21094.1 137 NGFADGAAAGARFNWPAGVAIDAEGNLIVADSGNDC---IRKVTPDGTVRTLAGS 188
                 4467788999*******************9988884...678********99864 PP

  == domain 4  score: 14.7 bits;  conditional E-value: 6.3e-06
      DUF839 416 aGdpedakaasaessegndlespDnlafdpaGrlwiatDgsgskdellgvtaeGkvynlarnd 478
                 aG  e ++ +  +  +++ ++ p ++a+d++G++++a+ g++    ++ vt++G v++la+ +
  KOO21094.1 186 AGSREGEDGFADGAAADARFRGPEGVAIDAEGNIIVADSGNHC---IRKVTPDGTVSTLAGSR 245
                 666666667889999*********************9988884...678*********99654 PP

  == domain 5  score: 0.5 bits;  conditional E-value: 0.13
      DUF839 422 akaasaessegndlespDnlafdpaGrlwiatDgsgskdell 463
                 ++ +  +  +++ ++ p  +a+d+ G +++a+  ++   +l 
  KOO21094.1 248 EDGFADGAAADARFDGPYSVAIDADGSVLVADNENHCIRKLT 289
                 445778889999******************988777554444 PP

>> Phytase-like  Esterase-like activity of phytase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.2   0.0    0.0011       2.1      59     100 ..      57     126 ..      25     151 .. 0.70
   2 ?    3.1   0.0     0.037        75      72     101 ..     154     183 ..     139     191 .. 0.89
   3 !   13.2   0.0   3.2e-05     0.064      60     101 ..     198     239 ..     188     289 .. 0.72
   4 ?   -1.3   0.0      0.83   1.7e+03      72      95 ..     266     289 ..     250     300 .. 0.83

  Alignments for each domain:
  == domain 1  score: 8.2 bits;  conditional E-value: 0.0011
  Phytase-like  59 d............................gapfpkkglDpEgiavapdgtfwvssEggpfilefdadGkl 100
                   d                            ga+ + + + pEg+a++++g+++v++  +  i+++++dG++
    KOO21094.1  57 DnhcirkvtpdgtvrtlagsregekgfadGAAADARFYWPEGVAIDAEGNIIVADRNNYCIRKVTPDGTV 126
                   33333333333333333333555555555677666788*****************************998 PP

  == domain 2  score: 3.1 bits;  conditional E-value: 0.037
  Phytase-like  72 giavapdgtfwvssEggpfilefdadGkll 101
                   g+a++++g+++v++ g+  i+++++dG+++
    KOO21094.1 154 GVAIDAEGNLIVADSGNDCIRKVTPDGTVR 183
                   8999***********************985 PP

  == domain 3  score: 13.2 bits;  conditional E-value: 3.2e-05
  Phytase-like  60 gapfpkkglDpEgiavapdgtfwvssEggpfilefdadGkll 101
                   ga+ + +   pEg+a++++g+++v++ g++ i+++++dG++ 
    KOO21094.1 198 GAAADARFRGPEGVAIDAEGNIIVADSGNHCIRKVTPDGTVS 239
                   55555555689****************************993 PP

  == domain 4  score: -1.3 bits;  conditional E-value: 0.83
  Phytase-like  72 giavapdgtfwvssEggpfilefd 95 
                   ++a+++dg+++v++  ++ i++ +
    KOO21094.1 266 SVAIDADGSVLVADNENHCIRKLT 289
                   688999999999999999998876 PP

>> Tcp10_C  T-complex protein 10 C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.3   0.0     0.017        34      86     148 ..      64     129 ..      37     144 .. 0.62
   2 !    8.8   0.0   0.00074       1.5      86     151 ..     176     244 ..     100     257 .. 0.78

  Alignments for each domain:
  == domain 1  score: 4.3 bits;  conditional E-value: 0.017
                 E-TTS-EEEE-TTS-EEEE-TTS-EEEE-TTS-EEEE-T.TS-EEE..E-SSEEEEE-TTS-EEEE CS
     Tcp10_C  86 vfpdgtvkslksdgreetvfpdGtvlkvernGdkvielp.nGqrEi..htkefkrReyPdGTvKtv 148
                 v pdgtv++l  +++ e  f+dG+    +    + + ++ +G+  +  + + + r++ PdGTv t+
  KOO21094.1  64 VTPDGTVRTLAGSREGEKGFADGAAADARFYWPEGVAIDaEGNIIVadRNNYCIRKVTPDGTVSTL 129
                 557777777777777777777777777666444444443144443311233456777777777766 PP

  == domain 2  score: 8.8 bits;  conditional E-value: 0.00074
                 E-TTS-EEEE-TTS-EEEE-TTS-EEEE-TTS-EEEE-T.TS-EEEE..-SSEEEEE-TTS-EEEEETT CS
     Tcp10_C  86 vfpdgtvkslksdgreetvfpdGtvlkvernGdkvielp.nGqrEih..tkefkrReyPdGTvKtvysd 151
                 v pdgtv++l  +++ e  f+dG+    +  G + + ++ +G+  +    +++ r++ PdGTv t+   
  KOO21094.1 176 VTPDGTVRTLAGSREGEDGFADGAAADARFRGPEGVAIDaEGNIIVAdsGNHCIRKVTPDGTVSTLAGS 244
                 569999999999999999999999999999999999886245554431145678999999999987555 PP

>> SBBP  Beta-propeller repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.5   0.0      0.32   6.4e+02      15      25 ..      40      50 ..      39      53 .. 0.86
   2 ?    5.7   0.0    0.0075        15      13      26 ..      94     107 ..      91     110 .. 0.91
   3 ?    2.5   0.0     0.074   1.5e+02      14      26 ..     151     163 ..     143     166 .. 0.86
   4 ?    3.2   0.2     0.045        89      15      26 ..     208     219 ..     208     226 .. 0.90
   5 ?    0.1   0.1      0.41   8.2e+02      15      29 ..     264     278 ..     262     278 .. 0.87

  Alignments for each domain:
  == domain 1  score: 0.5 bits;  conditional E-value: 0.32
        SBBP 15 gngIavDsnGN 25
                + g+a+D +GN
  KOO21094.1 40 PAGVAIDVEGN 50
                779******** PP

  == domain 2  score: 5.7 bits;  conditional E-value: 0.0075
        SBBP  13 tygngIavDsnGNi 26 
                 +++ g+a+D +GNi
  KOO21094.1  94 YWPEGVAIDAEGNI 107
                 5899*********8 PP

  == domain 3  score: 2.5 bits;  conditional E-value: 0.074
        SBBP  14 ygngIavDsnGNi 26 
                 ++ g+a+D +GN 
  KOO21094.1 151 WPAGVAIDAEGNL 163
                 689*********4 PP

  == domain 4  score: 3.2 bits;  conditional E-value: 0.045
        SBBP  15 gngIavDsnGNi 26 
                 + g+a+D +GNi
  KOO21094.1 208 PEGVAIDAEGNI 219
                 679********8 PP

  == domain 5  score: 0.1 bits;  conditional E-value: 0.41
        SBBP  15 gngIavDsnGNiYvt 29 
                 ++++a+D +G + v+
  KOO21094.1 264 PYSVAIDADGSVLVA 278
                 79*****99988775 PP

>> SdiA-regulated  SdiA-regulated
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.7   0.0    0.0039       7.7     184     238 ..      49     109 ..      32     116 .. 0.69
   2 ?   -0.8   0.0      0.36   7.2e+02     225     238 ..     152     165 ..     146     171 .. 0.84
   3 ?    5.1   0.1    0.0057        11     221     238 ..     204     221 ..     153     227 .. 0.72

  Alignments for each domain:
  == domain 1  score: 5.7 bits;  conditional E-value: 0.0039
  SdiA-regulated 184 ghllvLSdeSrllleldeegevlsslsLlkgsngLeedipq......aEGvamDeegnlYi 238
                     g+l++   + + + +++ +g v+     ++g++g  +          +EGva+D+egn+ +
      KOO21094.1  49 GNLILADSDNHCIRKVTPDGTVRTLAGSREGEKGFADGAAAdarfywPEGVAIDAEGNIIV 109
                     555555556677777777777777777777777776554322222339**********966 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 0.36
  SdiA-regulated 225 aEGvamDeegnlYi 238
                     + Gva+D+egnl +
      KOO21094.1 152 PAGVAIDAEGNLIV 165
                     56*********976 PP

  == domain 3  score: 5.1 bits;  conditional E-value: 0.0057
  SdiA-regulated 221 dipqaEGvamDeegnlYi 238
                       + +EGva+D+egn+ +
      KOO21094.1 204 RFRGPEGVAIDAEGNIIV 221
                     45679**********976 PP

>> Ldl_recept_b  Low-density lipoprotein receptor repeat class B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.9   0.0      0.34   6.7e+02      32      41 ..      37      46 ..      25      47 .. 0.81
   2 ?    5.0   0.0     0.018        36      31      41 ..      90     102 ..      58     103 .. 0.87
   3 ?    3.6   0.0     0.049        97      32      41 ..     149     158 ..     136     159 .. 0.84
   4 ?    0.1   0.0      0.59   1.2e+03      32      41 ..     205     214 ..     166     215 .. 0.72
   5 ?   -0.7   0.1       1.1   2.1e+03       7      23 ..     258     275 ..     257     280 .. 0.83

  Alignments for each domain:
  == domain 1  score: 0.9 bits;  conditional E-value: 0.34
                  -S-EEEEEEE CS
  Ldl_recept_b 32 lqnPrgiAvD 41
                  ++ P+g+A+D
    KOO21094.1 37 FRSPAGVAID 46
                  899******9 PP

  == domain 2  score: 5.0 bits;  conditional E-value: 0.018
                   S..-S-EEEEEEE CS
  Ldl_recept_b  31 d..lqnPrgiAvD 41 
                   d  +++P+g+A+D
    KOO21094.1  90 DarFYWPEGVAID 102
                   1469********9 PP

  == domain 3  score: 3.6 bits;  conditional E-value: 0.049
                   -S-EEEEEEE CS
  Ldl_recept_b  32 lqnPrgiAvD 41 
                   +++P+g+A+D
    KOO21094.1 149 FNWPAGVAID 158
                   89*******9 PP

  == domain 4  score: 0.1 bits;  conditional E-value: 0.59
                   -S-EEEEEEE CS
  Ldl_recept_b  32 lqnPrgiAvD 41 
                   ++ P+g+A+D
    KOO21094.1 205 FRGPEGVAID 214
                   7889999999 PP

  == domain 5  score: -0.7 bits;  conditional E-value: 1.1
                   ETTTT.EEEES-STTS-- CS
  Ldl_recept_b   7 Dwsld.asisvadlnGsh 23 
                   D++ d ++  ++d++Gs 
    KOO21094.1 258 DARFDgPYSVAIDADGSV 275
                   888899999999999996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (483 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       453  (0.0252663); expected 358.6 (0.02)
Passed bias filter:                      385  (0.0214736); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.57u 0.28s 00:00:00.85 Elapsed: 00:00:00.43
# Mc/sec: 3402.59
//
Query:       KOO21095.1  [L=923]
Description: monogalactosyldiacylglycerol synthase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    7.1e-15   55.5   0.0    1.4e-14   54.6   0.0    1.5  1  MGDG_synth       Monogalactosyldiacylglycerol (MGDG) synthase
    1.5e-07   31.5   0.0    1.5e-07   31.5   0.0    3.0  3  Glyco_tran_28_C  Glycosyltransferase family 28 C-terminal dom
      1e-05   26.0   0.2      1e-05   26.0   0.2    3.0  3  Glyco_trans_1_4  Glycosyl transferases group 1


Domain annotation for each model (and alignments):
>> MGDG_synth  Monogalactosyldiacylglycerol (MGDG) synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.6   0.0   2.3e-18   1.4e-14       1     169 []     188     368 ..     188     368 .. 0.81

  Alignments for each domain:
  == domain 1  score: 54.6 bits;  conditional E-value: 2.3e-18
                 -HHHHHHHH......HHHHHHHGGGEEEEEEE------------.-----------.-..---------------------------HHHHHHHHHHH- CS
  MGDG_synth   1 Hnqaaealk......ealkaefgdeyqvlvkdllkelnpfllka.vlksYlflvkv.s..alyrllyygteekiqkksilaklatflakelaalleeeq 89 
                 H+ aa+a++      +a + e+  + +v+ +d +  l p +  + + ++++ l ++ +   +++ ly+ +++ +qk ++ a  + + +  + + + e++
  KOO21095.1 188 HKVAAKAVEaaiearKAANPERYGKVNVVLLDAMD-LCPEPFRIiMQGMFQELTQSlAgqHMLGYLYDMGDGGRQKARFQAVAENLCLVPMLERIAEYR 285
                 89999999988888777788888899999999998.555555550555577766664256999************************************ PP

                 -SEEEE-STTTTHHHHHHH..HTTT-TTTSEEEEE---SSS--GGG--TT-SEEEESSHHHH...HHHHHCT--GG.GEEE--S-- CS
  MGDG_synth  90 PDiiisthplvaelplsvL..kskellkrvlvvtvvtDfellhktWlrkeidryyvaskevk...kealekGidks.nikvtGiPv 169
                 PD +++th l+a+l + +L  +s++l  r++v+tv+tD+ l  ++W++k +dr +v+ +e++   +   +kG ++   ++++GiP+
  KOO21095.1 286 PDAVLCTHFLPAQL-MATLrsRSRTLERRLPVATVLTDLDL-QYMWVQK-VDRMFVPREEARimlDAYAAKGAPSAgSVSMVGIPI 368
                 **************.99995566778899**********86.****975.9*********76222445557876543788888887 PP

>> Glyco_tran_28_C  Glycosyltransferase family 28 C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.5   0.0   2.6e-11   1.5e-07      31     139 ..     463     570 ..     445     597 .. 0.73
   2 ?   -0.5   0.9      0.18   1.1e+03     119     160 ..     677     712 ..     653     722 .. 0.45
   3 ?   -5.0   4.1         3   1.8e+04     116     136 ..     876     896 ..     805     922 .. 0.63

  Alignments for each domain:
  == domain 1  score: 31.5 bits;  conditional E-value: 2.6e-11
                      HHCHHHCCT-EEC---STT-TTTT....CEEEEEESSSSHHHHHHHH-EEEECS-CHHHHHHHHTT--EEEE.--TT....S-HHHHHHHHHHH CS
  Glyco_tran_28_C  31 elqvlhqtGkreleevkikveelt....lkvevfefidkmaeaikaadLvIsRAGagtiaEllalgkplIlv.plpeaaenhqdnNakelekag 119
                       l ++  tG++  ++++ +++++     + v+ + ++++m  +++ adL +s++G  ++aE++al +p+++  p p     + + Na  l +ag
       KOO21095.1 463 ALRLVVVTGRQ--ADIRADLARVPvparHAVKLLGYVTQMPTLLSCADLLVSKSGGLSVAEAAALSVPMVVLdPIPG----QEQRNADVLLEAG 550
                      56677777855..33333333333333689**************************************987656666....667899999999* PP

                      HHHSSEEEE-STTCHHHHHH CS
  Glyco_tran_28_C 120 aalvleqkeltpekLeeall 139
                      aa  + +  l + k+ ++l+
       KOO21095.1 551 AAVKINDLPLLGVKVDAVLR 570
                      99999988886666655554 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 0.18
                      HHHHSSEEEE-STTCHHHHHHHHCCS---S---SSCH..CHH CS
  Glyco_tran_28_C 119 gaalvleqkeltpekLeeallelaaeklrlaekskasaaskf 160
                      +++ ++ q+    ++++e+l e ++ek+ +++ s+ +   + 
       KOO21095.1 677 LVEKGIGQA----KQIAETLAEQMKEKQLAEQASSRA--DAS 712
                      333334443....444555555444444433333332..222 PP

  == domain 3  score: -5.0 bits;  conditional E-value: 3
                      HHHHHHHSSEEEE-STTCHHH CS
  Glyco_tran_28_C 116 ekagaalvleqkeltpekLee 136
                      ++a aa++   ++++ e+L++
       KOO21095.1 876 ADAEAARMATAAQAEVERLAA 896
                      344444444444444444444 PP

>> Glyco_trans_1_4  Glycosyl transferases group 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.0   0.2   1.7e-09     1e-05      32     117 ..     464     548 ..     445     560 .. 0.73
   2 ?    0.9   0.0     0.093   5.5e+02       3      43 ..     635     680 ..     633     735 .. 0.75
   3 ?   -3.9   0.3       2.8   1.7e+04      86     116 ..     804     839 ..     803     848 .. 0.52

  Alignments for each domain:
  == domain 1  score: 26.0 bits;  conditional E-value: 1.7e-09
                      EEEEEES---..HHHHHHHT....T-T.TEEEE---THHHHHHHH-SEEEE-----SHHHHHHHHTT-EEEE-T.GGGTTT--TTSS.EE-- CS
  Glyco_trans_1_4  32 vrlvivGdgprpeeleelaa....gleerveftGfvedlaellaaadvfvaPsegfglkllEamaaglpvVatd.vggiaevvgeng.llvp 117
                      +rlv+v  g r++++++ +a      ++ v+++G+v++++ ll+ ad++v  s   gl++ Ea+a+ +p+V+ d ++g +e  ++n+ +l++
       KOO21095.1 464 LRLVVVT-G-RQADIRADLArvpvPARHAVKLLGYVTQMPTLLSCADLLVSKSG--GLSVAEAAALSVPMVVLDpIPG-QE--QRNAdVLLE 548
                      7899998.5.4446665443253544577*********************9995..79**************963778.55..444435554 PP

  == domain 2  score: 0.9 bits;  conditional E-value: 0.093
                      EEEEES---GG.GTHHHHHHHH.HHHH.H.H...EEEEEES---... CS
  Glyco_trans_1_4   3 vilfvGrleenvkgvdllleav.pllrkk.d...vrlvivGdgp.rp 43 
                       +l v +l + +++   l+e + p+ ++k +   ++lv v +g  ++
       KOO21095.1 635 YVLAVAQL-AYEDATAALAEVWtPEAQEKaQraaAELVAVSKGLvEK 680
                      67889999.556999***********977535779999999874433 PP

  == domain 3  score: -3.9 bits;  conditional E-value: 2.8
                      HHHHHHHTT-EEEE-TGGG..TTT--...TTSSEE- CS
  Glyco_trans_1_4  86 kllEamaaglpvVatdvgg..iaevv...gengllv 116
                      k+ E +a +++ Va++ +   +++++   +e+g ++
       KOO21095.1 804 KAAEIAATKKAAVASKEEErrLERLLteqNEAGRIA 839
                      567888888888888764311333333222333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (923 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1478  (0.0824363); expected 358.6 (0.02)
Passed bias filter:                      449  (0.0250432); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.80u 0.28s 00:00:01.08 Elapsed: 00:00:00.45
# Mc/sec: 6219.62
//
Query:       KOO21096.1  [L=329]
Description: hypothetical protein Ctob_001435 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    0.00017   21.7   0.3     0.0009   19.3   0.3    2.0  1  ARL2_Bind_BART  The ARF-like 2 binding protein BART
  ------ inclusion threshold ------
       0.02   14.8   0.1       0.23   11.3   0.0    2.6  2  Rossmann-like   Rossmann-like domain


Domain annotation for each model (and alignments):
>> ARL2_Bind_BART  The ARF-like 2 binding protein BART
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.3   0.3     1e-07    0.0009       7     112 ..      78     182 ..      74     185 .. 0.74

  Alignments for each domain:
  == domain 1  score: 19.3 bits;  conditional E-value: 1e-07
                     HHHHHHTS-HHHHHHHHHHHHHHHHTT--SS-SSTTHHHHHHHHHHHHHHHHHH.HHTT-.SSS--THHHHH..........SS-G...GSSHHH CS
  ARL2_Bind_BART   7 esleeflaspefkspvqeFidencivFddeeenkleytdihkeYkklveklles.lleei.gismeefleal......ekslsekk...evakkv 90 
                      ++  f++s+e++ +v+ F +++c           e   +++ ++klv+kl+++ ll+     +m +++  +             +    v+ +v
      KOO21096.1  78 PAISLFFTSDEWRLAVTAFFERYCA---------AETHAVYMAFRKLVDKLISEqLLQLEhVPDMATLAMFCervgasD------DldgWVEADV 157
                     67899*******************8.........57789**************98777663556777777775443321......1222233333 PP

                     H...HHHHGGG-HHHHHHHHHHHHH CS
  ARL2_Bind_BART  91 f...eqllaadDFeaFkkmMvkrnk 112
                         + +l +dD + F ++M ++  
      KOO21096.1 158 AeqaKLMLLCDDEARFAELMREYAS 182
                     33337899999999*****999876 PP

>> Rossmann-like  Rossmann-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.4   0.0      0.11   9.6e+02      76      95 ..      26      45 ..       4      53 .. 0.71
   2 ?   11.3   0.0   2.6e-05      0.23      63     112 ..     155     206 ..     119     211 .. 0.87

  Alignments for each domain:
  == domain 1  score: -0.4 bits;  conditional E-value: 0.11
  Rossmann-like 76 vPdaelpglvkglaatgavr 95
                   v  ael +lv+ l a+++ +
     KOO21096.1 26 VGKAELVELVESLDASSSEK 45
                   56678888888777766555 PP

  == domain 2  score: 11.3 bits;  conditional E-value: 2.6e-05
  Rossmann-like  63 edvaaraellllavPdaelpglvkglaatgav..raGtivahtsganGveil 112
                     dva++a+l+ll+  +a++++l+++ a+ ++    +G ++a    a+G   l
     KOO21096.1 155 ADVAEQAKLMLLCDDEARFAELMREYASMTSAveADGDMLADLEDAFGFSAL 206
                    499***********************986543126899***99999998655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (329 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       602  (0.0335769); expected 358.6 (0.02)
Passed bias filter:                      510  (0.0284455); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.49u 0.26s 00:00:00.75 Elapsed: 00:00:00.42
# Mc/sec: 2366.83
//
Query:       KOO21097.1  [L=292]
Description: ankyrin domain protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    9.8e-41  138.2   0.7    4.6e-14   52.8   0.0    4.2  4  Ank_2     Ankyrin repeats (3 copies)
    1.1e-27   95.2   3.8    3.8e-05   23.9   0.1    6.4  6  Ank       Ankyrin repeat
    3.5e-23   81.7   1.4    1.7e-07   31.7   0.0    5.3  6  Ank_4     Ankyrin repeats (many copies)
    1.8e-22   79.1   2.2    3.7e-05   23.9   0.0    5.5  6  Ank_5     Ankyrin repeats (many copies)
    1.6e-20   71.0   2.0      0.029   14.9   0.0    6.3  6  Ank_3     Ankyrin repeat


Domain annotation for each model (and alignments):
>> Ank_2  Ankyrin repeats (3 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.6   0.0   4.5e-15   1.6e-11       2      78 ..      17     117 ..      16     122 .. 0.73
   2 !   32.7   0.0   2.4e-11   8.7e-08      26      83 .]      92     155 ..      91     155 .. 0.90
   3 !   52.8   0.0   1.3e-17   4.6e-14       1      79 [.     129     218 ..     129     222 .. 0.88
   4 !   24.8   0.0   6.6e-09   2.4e-05      25      65 ..     191     237 ..     189     242 .. 0.81

  Alignments for each domain:
  == domain 1  score: 44.6 bits;  conditional E-value: 4.5e-15
       Ank_2   2 hlAakn.gnlelvklLl...eg...adpn.......k......ngktaLhyAakngnleivklLleh......adndgrtpLhyAarsghleivklLle 74 
                 +lAa + + l+ vk++l   ++   +  n              +g+ +L++Aa++g++++++lL+ +      ad+ g tpLh A+  g  ++v++L+ 
  KOO21097.1  17 MLAAVKeNRLDDVKIFLdveKNkdfC--NvvdgvygAtslkdeKGLEPLMIAAIEGHEKMCELLIRKranltcADQRGDTPLHRAVVLGFANVVEVLIS 113
                 55555426668999999875333341..1222333303344679*********************977667777799*********************8 PP

       Ank_2  75 kgad 78 
                 k+a 
  KOO21097.1 114 KNAP 117
                 7775 PP

  == domain 2  score: 32.7 bits;  conditional E-value: 2.4e-11
       Ank_2  26 gktaLhyAakngnleivklLleh...ad...ndgrtpLhyAarsghleivklLlekgadinlkd 83 
                 g t+Lh A+  g  ++v+ L+++   +d   ++g t+Lhy+   g+  + +lLl kga++n++d
  KOO21097.1  92 GDTPLHRAVVLGFANVVEVLISKnapLDsrsKTGSTALHYSTLRGNRGLSELLLMKGANPNVFD 155
                 79*******************977895555799**********9**8999999999*****987 PP

  == domain 3  score: 52.8 bits;  conditional E-value: 1.3e-17
       Ank_2   1 LhlAakngnlelvklLl.egadpn..k..ngktaLhyAakngnleivklLleh......adndgrtpLhyAarsghleivklLlekgadi 79 
                 Lh+  + gn  l +lLl +ga+pn  +  +g+t+Lh+Aa++g++ i  +Ll+       +++ g tpLh Aa +g+ +++k+Ll++ga++
  KOO21097.1 129 LHYSTLRGNRGLSELLLmKGANPNvfDepFGNTPLHFAAMEGHVGIGLILLNSrasmdsVNSFGDTPLHDAAGYGQANFCKMLLKRGANV 218
                 788888777779999999******98458*************999999999966676677799*********************999987 PP

  == domain 4  score: 24.8 bits;  conditional E-value: 6.6e-09
       Ank_2  25 ngktaLhyAakngnleivklLleh......adndgrtpLhyAarsgh 65 
                 +g t+Lh Aa +g+ +++k+Ll+       +  + +tpL++A + ++
  KOO21097.1 191 FGDTPLHDAAGYGQANFCKMLLKRganvlaLSATRKTPLMCATSRSY 237
                 799*******************96744544338999******97665 PP

>> Ank  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.0   2.1e-06    0.0076       5      30 ..      62      88 ..      59      90 .. 0.89
   2 !   17.7   0.0     1e-06    0.0036       2      30 ..      92     121 ..      91     123 .. 0.85
   3 !   14.2   0.0   1.3e-05     0.045       2      31 ..     125     155 ..     124     156 .. 0.79
   4 !   15.7   0.0   4.1e-06     0.015       2      31 ..     159     189 ..     158     190 .. 0.71
   5 !   23.9   0.1   1.1e-08   3.8e-05       2      30 ..     192     221 ..     191     223 .. 0.92
   6 ?    2.2   0.0     0.078   2.8e+02       3      10 ..     226     233 ..     225     248 .. 0.80

  Alignments for each domain:
  == domain 1  score: 16.7 bits;  conditional E-value: 2.1e-06
                HHHHHHHHTTHHHHHHHH.TTTSTTCB CS
         Ank  5 PLHlAatngkkriiklLL.hGAnlnal 30
                PL++Aa +g++ +++lL+ ++Anl+  
  KOO21097.1 62 PLMIAAIEGHEKMCELLIrKRANLTCA 88
                9*****999999******889**9765 PP

  == domain 2  score: 17.7 bits;  conditional E-value: 1e-06
                 SBBHHHHHHHHTTHHHHHHHH.TTTSTTCB CS
         Ank   2 GnTPLHlAatngkkriiklLL.hGAnlnal 30 
                 G+TPLH+A+  g +++++ L+ + A l+++
  KOO21097.1  92 GDTPLHRAVVLGFANVVEVLIsKNAPLDSR 121
                 9********888889******667888876 PP

  == domain 3  score: 14.2 bits;  conditional E-value: 1.3e-05
                 SBBHHHHHH....HHTTHHHHHHHH.TTTSTTCBT CS
         Ank   2 GnTPLHlAa....tngkkriiklLL.hGAnlnald 31 
                 G T+LH+ +    ++g     +lLL +GAn+n  d
  KOO21097.1 125 GSTALHY-StlrgNRG---LSELLLmKGANPNVFD 155
                 88*****.54655555...88899999*****765 PP

  == domain 4  score: 15.7 bits;  conditional E-value: 4.1e-06
                 SBBHHHHHHHHTTHHHHHHHH.TTTSTTCBT CS
         Ank   2 GnTPLHlAatngkkriiklLL.hGAnlnald 31 
                 GnTPLH Aa++g++ i   LL ++A+ ++++
  KOO21097.1 159 GNTPLHFAAMEGHVGIGLILLnSRASMDSVN 189
                 9********9996444333665568777665 PP

  == domain 5  score: 23.9 bits;  conditional E-value: 1.1e-08
                 SBBHHHHHHHHTTHHHHHHHH.TTTSTTCB CS
         Ank   2 GnTPLHlAatngkkriiklLL.hGAnlnal 30 
                 G+TPLH Aa +g+++ +k+LL +GAn+ al
  KOO21097.1 192 GDTPLHDAAGYGQANFCKMLLkRGANVLAL 221
                 9********99**********88***9876 PP

  == domain 6  score: 2.2 bits;  conditional E-value: 0.078
                 BBHHHHHH CS
         Ank   3 nTPLHlAa 10 
                  TPL++A 
  KOO21097.1 226 KTPLMCAT 233
                 5*****85 PP

>> Ank_4  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.0      0.73   2.6e+03       7      30 ..      19      45 ..      15      54 .. 0.64
   2 !   29.4   0.0   2.4e-10   8.7e-07       2      55 .]      60     112 ..      59     112 .. 0.87
   3 !   14.2   0.0   1.4e-05      0.05      16      55 .]     107     145 ..     105     145 .. 0.92
   4 !   17.1   0.0   1.8e-06    0.0063      19      48 ..     143     172 ..     139     175 .. 0.89
   5 !   31.7   0.0   4.7e-11   1.7e-07       2      55 .]     160     212 ..     159     212 .. 0.97
   6 !   11.9   0.0   7.1e-05      0.26       2      48 ..     193     238 ..     192     241 .. 0.91

  Alignments for each domain:
  == domain 1  score: -0.9 bits;  conditional E-value: 0.73
       Ank_4  7 yaaisgrlelvrlLl..ekgad.inaq 30
                +a++++rl+ v++ l  ek++d +n +
  KOO21097.1 19 AAVKENRLDDVKIFLdvEKNKDfCNVV 45
                566677777777777666777755555 PP

  == domain 2  score: 29.4 bits;  conditional E-value: 2.4e-10
       Ank_4   2 ltaLhyaaisgrlelvrlLlekgadinaqdnrsGetalhiAakrgnveilklLl 55 
                 l++L  aai+g++++++lL+ k+a++ +  + +G+t+lh+A+  g+ ++++ L+
  KOO21097.1  60 LEPLMIAAIEGHEKMCELLIRKRANLTCA-DQRGDTPLHRAVVLGFANVVEVLI 112
                 789*****************99***9887.889********9777666666665 PP

  == domain 3  score: 14.2 bits;  conditional E-value: 1.4e-05
       Ank_4  16 lvrlLlekgadinaqdnrsGetalhiAakrgnveilklLl 55 
                 +v+ L++k+a ++ + ++ G talh+  +rgn    +lLl
  KOO21097.1 107 VVEVLISKNAPLDSR-SKTGSTALHYSTLRGNRGLSELLL 145
                 6899***********.****************88888876 PP

  == domain 4  score: 17.1 bits;  conditional E-value: 1.8e-06
       Ank_4  19 lLlekgadinaqdnrsGetalhiAakrgnv 48 
                 lLl kga++n  d   G+t+lh+Aa+ g+v
  KOO21097.1 143 LLLMKGANPNVFDEPFGNTPLHFAAMEGHV 172
                 67779*******8889************98 PP

  == domain 5  score: 31.7 bits;  conditional E-value: 4.7e-11
       Ank_4   2 ltaLhyaaisgrlelvrlLlekgadinaqdnrsGetalhiAakrgnveilklLl 55 
                 +t+Lh aa++g++ +  +Ll+++a+ + + n+ G+t+lh Aa  g+ ++ k+Ll
  KOO21097.1 160 NTPLHFAAMEGHVGIGLILLNSRASMDSV-NSFGDTPLHDAAGYGQANFCKMLL 212
                 89***************************.*********************997 PP

  == domain 6  score: 11.9 bits;  conditional E-value: 7.1e-05
       Ank_4   2 ltaLhyaaisgrlelvrlLlekgadinaqdnrsGetalhiAakrgnv 48 
                  t+Lh aa +g+   ++ Ll +ga++ a  ++   t+l +A +r+++
  KOO21097.1 193 DTPLHDAAGYGQANFCKMLLKRGANVLAL-SATRKTPLMCATSRSYP 238
                 69**************************9.99889******999865 PP

>> Ank_5  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.6   0.0      0.11   3.8e+02      23      37 ..      20      37 ..      17      47 .. 0.79
   2 !   23.1   0.0   1.9e-08   6.8e-05      12      56 .]      55      99 ..      50      99 .. 0.95
   3 !   19.0   0.0   3.7e-07    0.0013       9      55 ..      85     131 ..      82     132 .. 0.90
   4 !   11.7   0.0   7.2e-05      0.26       7      47 ..     116     156 ..     111     157 .. 0.88
   5 !   21.9   0.1   4.5e-08   0.00016      11      53 ..     155     196 ..     144     196 .. 0.87
   6 !   23.9   0.0     1e-08   3.7e-05      13      53 ..     189     229 ..     183     230 .. 0.89

  Alignments for each domain:
  == domain 1  score: 1.6 bits;  conditional E-value: 0.11
       Ank_5 23 AakygaadvvrlLl...a 37
                A+k +++d v+++l   +
  KOO21097.1 20 AVKENRLDDVKIFLdveK 37
                899**********95433 PP

  == domain 2  score: 23.1 bits;  conditional E-value: 1.9e-08
       Ank_5 12 ldgggntpLhvAakygaadvvrlLlargadlnltdsrGltaldlA 56
                +d++g +pL++Aa  g+  +++lL+  +a+l++ d rG+t+l+ A
  KOO21097.1 55 KDEKGLEPLMIAAIEGHEKMCELLIRKRANLTCADQRGDTPLHRA 99
                799***************************************976 PP

  == domain 3  score: 19.0 bits;  conditional E-value: 3.7e-07
       Ank_5   9 vnrldgggntpLhvAakygaadvvrlLlargadlnltdsrGltaldl 55 
                 + + d++g tpLh A+  g a+vv++L+  +a l+ + + G+tal++
  KOO21097.1  85 LTCADQRGDTPLHRAVVLGFANVVEVLISKNAPLDSRSKTGSTALHY 131
                 556677777************************************98 PP

  == domain 4  score: 11.7 bits;  conditional E-value: 7.2e-05
       Ank_5   7 advnrldgggntpLhvAakygaadvvrlLlargadlnltds 47 
                 a ++ + + g t+Lh++  +g+  + +lLl+ ga++n+ d+
  KOO21097.1 116 APLDSRSKTGSTALHYSTLRGNRGLSELLLMKGANPNVFDE 156
                 66777888999**************************9985 PP

  == domain 5  score: 21.9 bits;  conditional E-value: 4.5e-08
       Ank_5  11 rldgggntpLhvAakygaadvvrlLlargadlnltdsrGltal 53 
                 + +++gntpLh+Aa  g+  + ++Ll+ +a+ +  +s G+t+l
  KOO21097.1 155 D-EPFGNTPLHFAAMEGHVGIGLILLNSRASMDSVNSFGDTPL 196
                 3.589*************************************8 PP

  == domain 6  score: 23.9 bits;  conditional E-value: 1e-08
       Ank_5  13 dgggntpLhvAakygaadvvrlLlargadlnltdsrGltal 53 
                 + +g tpLh Aa yg a+ +++Ll+rga+  +  +  +t+l
  KOO21097.1 189 NSFGDTPLHDAAGYGQANFCKMLLKRGANVLALSATRKTPL 229
                 55667************************999999988887 PP

>> Ank_3  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.6   0.0     1e-05     0.036       2      29 ..      59      85 ..      58      87 .. 0.89
   2 !   14.9   0.0   8.1e-06     0.029       2      30 ..      92     119 ..      91     120 .. 0.91
   3 !    7.2   0.0    0.0027       9.5       2      30 ..     125     152 ..     124     153 .. 0.88
   4 !   13.0   0.0   3.4e-05      0.12       2      21 ..     159     178 ..     158     184 .. 0.78
   5 !   14.5   0.0   1.1e-05      0.04       2      29 ..     192     218 ..     191     220 .. 0.94
   6 ?   -0.2   0.0      0.68   2.4e+03       4      11 ..     227     234 ..     225     240 .. 0.82

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 1e-05
       Ank_3  2 GetpLhlAarsgnleivkfLlenkgadv 29
                G  pL++Aa  g+ +++++L++ k a++
  KOO21097.1 59 GLEPLMIAAIEGHEKMCELLIR-KRANL 85
                788*******************.78776 PP

  == domain 2  score: 14.9 bits;  conditional E-value: 8.1e-06
       Ank_3   2 GetpLhlAarsgnleivkfLlenkgadvn 30 
                 G tpLh+A+  g  ++v+ L+  k+a+++
  KOO21097.1  92 GDTPLHRAVVLGFANVVEVLIS-KNAPLD 119
                 89********************.888775 PP

  == domain 3  score: 7.2 bits;  conditional E-value: 0.0027
       Ank_3   2 GetpLhlAarsgnleivkfLlenkgadvn 30 
                 G t+Lh+  + gn  + ++Ll  kga++n
  KOO21097.1 125 GSTALHYSTLRGNRGLSELLLM-KGANPN 152
                 89************97888888.8***99 PP

  == domain 4  score: 13.0 bits;  conditional E-value: 3.4e-05
       Ank_3   2 GetpLhlAarsgnleivkfL 21 
                 G+tpLh+Aa+ g++ i   L
  KOO21097.1 159 GNTPLHFAAMEGHVGIGLIL 178
                 9************9853333 PP

  == domain 5  score: 14.5 bits;  conditional E-value: 1.1e-05
       Ank_3   2 GetpLhlAarsgnleivkfLlenkgadv 29 
                 G tpLh Aa +g  + +k+Ll+ +ga+v
  KOO21097.1 192 GDTPLHDAAGYGQANFCKMLLK-RGANV 218
                 89********************.9**98 PP

  == domain 6  score: -0.2 bits;  conditional E-value: 0.68
       Ank_3   4 tpLhlAar 11 
                 tpL++A +
  KOO21097.1 227 TPLMCATS 234
                 9****966 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (292 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       318  (0.0177366); expected 358.6 (0.02)
Passed bias filter:                      228  (0.0127168); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.47u 0.23s 00:00:00.70 Elapsed: 00:00:00.40
# Mc/sec: 2186.28
//
Query:       KOO21098.1  [L=594]
Description: hypothetical protein Ctob_001437 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.1e-24   83.9   0.0    8.6e-08   31.9   0.0    5.4  6  RRM_1     RNA recognition motif. (a.k.a. RRM, RBD, or RNP dom
  ------ inclusion threshold ------
       0.12   12.5   0.1       0.32   11.1   0.0    1.7  2  YqeY      Yqey-like protein
       0.19   11.9   0.0        0.8    9.9   0.0    2.0  2  RRM_7     RNA recognition motif
       0.68   10.0   3.9        1.6    8.7   1.2    2.7  3  PilJ      Type IV pili methyl-accepting chemotaxis transducer


Domain annotation for each model (and alignments):
>> RRM_1  RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.0   0.1      0.17   7.6e+02      10      24 ..      48      62 ..      47      93 .. 0.75
   2 ?   -2.1   0.0       0.8   3.6e+03      11      24 ..      77      90 ..      73     104 .. 0.71
   3 !   31.9   0.0   1.9e-11   8.6e-08       1      62 [.     165     232 ..     165     238 .. 0.85
   4 !   29.6   0.0   9.9e-11   4.4e-07      28      69 ..     255     296 ..     232     297 .. 0.82
   5 ?   -1.0   0.0      0.35   1.6e+03       1      20 [.     397     416 ..     397     433 .. 0.82
   6 !   14.4   0.0   5.6e-06     0.025      33      69 ..     499     535 ..     490     536 .. 0.92

  Alignments for each domain:
  == domain 1  score: 0.0 bits;  conditional E-value: 0.17
                SSHHHHHHHHHTTSC CS
       RRM_1 10 vteeeLkelFskfGp 24
                +t+e+L + F+kf++
  KOO21098.1 48 TTNEKLAAAFRKFEE 62
                688899999998864 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 0.8
                SHHHHHHHHHTTSC CS
       RRM_1 11 teeeLkelFskfGp 24
                t + +ke F++f+ 
  KOO21098.1 77 TAQAMKETFRNFEN 90
                77889999999865 PP

  == domain 3  score: 31.9 bits;  conditional E-value: 1.9e-11
                 EEEESETTTSSHHHHHHHHH......TTSCEEEEEEEEETTTSEEEEEEEEESSHHHHHHHHHHHTTE CS
       RRM_1   1 lfVgnLppdvteeeLkelFs......kfGpiksiklvrdetgkskgfafVeFeskedAekAlealngk 62 
                 lfVg++p+ +te e+ +lF       ++ p+ +++l+  ++g+skg++fVe +s  +Ae+A + l+++
  KOO21098.1 165 LFVGGIPFGMTEAEIARLFDgvalphEVSPVLEVSLMLSSDGSSKGWGFVELASVAQAERARKLLHRR 232
                 8******************72222225579999999999**********************9988875 PP

  == domain 4  score: 29.6 bits;  conditional E-value: 9.9e-11
                 EEEEEETTTSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEE CS
       RRM_1  28 iklvrdetgkskgfafVeFeskedAekAlealngkklggrel 69 
                 ++++rd+ g+++gfa V+F++ ++A++Ale +n ++lggr l
  KOO21098.1 255 CNVPRDSAGRAMGFATVRFPDVSSAARALEVMNQTMLGGRAL 296
                 8999***********************************987 PP

  == domain 5  score: -1.0 bits;  conditional E-value: 0.35
                 EEEESETTTSSHHHHHHHHH CS
       RRM_1   1 lfVgnLppdvteeeLkelFs 20 
                 ++++nLp+++    L+++  
  KOO21098.1 397 VVLRNLPHELRAAHLRRVIA 416
                 6789*****99999988765 PP

  == domain 6  score: 14.4 bits;  conditional E-value: 5.6e-06
                 ETTTSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEE CS
       RRM_1  33 detgkskgfafVeFeskedAekAlealngkklggrel 69 
                 d+ g+skg++ V   s ++A k ++ l+g +l+gr +
  KOO21098.1 499 DRFGRSKGIGLVFVRSAREAHKVVRLLDGFELNGRAV 535
                 5679******************************987 PP

>> YqeY  Yqey-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.1       1.2   5.3e+03      23      45 ..     328     350 ..     321     356 .. 0.77
   2 ?   11.1   0.0   7.2e-05      0.32      77     119 ..     392     436 ..     372     449 .. 0.85

  Alignments for each domain:
  == domain 1  score: -2.6 bits;  conditional E-value: 1.2
                 HHHHHHHHHHHHHHTTSS--HHH CS
        YqeY  23 lrllkaaikqeevderkelsdee 45 
                 l  l+ a+ qee+++r+e +d++
  KOO21098.1 328 LVELENALLQEEMASRREKEDDD 350
                 55678899999999999877775 PP

  == domain 2  score: 11.1 bits;  conditional E-value: 7.2e-05
                 HHHHHHHGGGS-----HHHHHHHHHHHHHHTT--..BGGGHHHHH CS
        YqeY  77 kaEievleeYlPeqlseeeiealvkeaiaevgae..smkdmGkvm 119
                  +E +v+ + lP++l  + ++++++e i+ev  e  + ++mGk+ 
  KOO21098.1 392 LREHRVVLRNLPHELRAAHLRRVIAERIEEVADEfvNDAEMGKLA 436
                 5799999************************998667889**975 PP

>> RRM_7  RNA recognition motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.0      0.92   4.1e+03      12      35 ..      75      98 ..      73     122 .. 0.72
   2 ?    9.9   0.0   0.00018       0.8       2      23 ..     163     184 ..     162     193 .. 0.91

  Alignments for each domain:
  == domain 1  score: -2.0 bits;  conditional E-value: 0.92
       RRM_7 12 DiteeelkatfkefgkvlvdwPkk 35
                D t +++k+tf++f + l +   +
  KOO21098.1 75 DETAQAMKETFRNFENKLAELKLR 98
                567789999999998887776555 PP

  == domain 2  score: 9.9 bits;  conditional E-value: 0.00018
       RRM_7   2 rkvFvGGlPiDiteeelkatfk 23 
                 +++FvGG+P  +te+e+ + f 
  KOO21098.1 163 CRLFVGGIPFGMTEAEIARLFD 184
                 789**************99885 PP

>> PilJ  Type IV pili methyl-accepting chemotaxis transducer N-term
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.0   0.1    0.0026        12      41      85 ..      47      89 ..      40      96 .. 0.76
   2 ?    8.7   1.2   0.00037       1.6      34      95 ..      68     129 ..      62     150 .. 0.81
   3 ?   -1.7   0.0      0.62   2.8e+03      20      37 ..     362     379 ..     361     425 .. 0.70

  Alignments for each domain:
  == domain 1  score: 6.0 bits;  conditional E-value: 0.0026
        PilJ 41 aearaqlretiaqfdrtlaalrlgdpapgllvpaeavraqleave 85
                 +  ++l+++ + f+++ a+l+ g+++p+  +   a+++ + + e
  KOO21098.1 47 PTTNEKLAAAFRKFEERYARLQAGEDEPDETAQ--AMKETFRNFE 89
                5677899999***************99766555..7777776665 PP

  == domain 2  score: 8.7 bits;  conditional E-value: 0.00037
        PilJ  34 aagaydaaearaqlretiaqfdrtlaalrlgdpapgllvpaeavraqleaveqlWqelkkpa 95 
                 +ag  + +e  ++ +et + f++ la+l+l  ++ g ++ ++a  +++   e++  +l++  
  KOO21098.1  68 QAGEDEPDETAQAMKETFRNFENKLAELKLRRQTEGAASLSGALADAFTTFEKNYTALEEER 129
                 44446789999*****************************9999999999998888888776 PP

  == domain 3  score: -1.7 bits;  conditional E-value: 0.62
        PilJ  20 RMqsqRlakeallaaaga 37 
                 R +sqR++   ++a a +
  KOO21098.1 362 RARSQRIGPPSTHASAHN 379
                 889999996666666666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (594 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       641  (0.0357521); expected 358.6 (0.02)
Passed bias filter:                      449  (0.0250432); expected 358.6 (0.02)
Passed Vit filter:                        50  (0.00278878); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.61u 0.28s 00:00:00.89 Elapsed: 00:00:00.44
# Mc/sec: 4073.75
//
Query:       KOO21099.1  [L=415]
Description: voltage-gated ion channel superfamily [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.8e-05   24.1   0.7    2.7e-05   23.5   0.7    1.2  1  Ion_trans  Ion transport protein


Domain annotation for each model (and alignments):
>> Ion_trans  Ion transport protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.5   0.7   1.5e-09   2.7e-05      52     229 ..      10     208 ..       2     222 .. 0.65

  Alignments for each domain:
  == domain 1  score: 23.5 bits;  conditional E-value: 1.5e-09
                 HHHHHHTH...............HHHHHHCHSH.HHHHHHHHHHHHHHHHHHHH.....HHHHHHHHHHHHGGGGGGHHHCHSHHHHHHHH.HHHHHHH CS
   Ion_trans  52 lkilalgl...............likkrYlrdp.wnilDflvvlpsllslvlse.....esllllsvlrlfrvlrllklisrleglrtlvt.alirsvk 128
                 ++++ +++                i+k+Yl++p  + +D++  lp+   ++ +       ++ ll+  r++rvl +  ++ r  + +t +  ++++ vk
  KOO21099.1  10 VRLFRTPFreparkgarlvynpkRIAKHYLSKPgGFAFDLITSLPTHWFFYETPkgtwgYAWRLLRCNRMLRVLDIQDVLYRPLS-KTKIDlSVLELVK 107
                 5555555566666677777778899*******989**********9998844334533344555666666666666665544333.4445558****** PP

                 HHHHHHHHHHHHHHHHHHHHHHHHTTSCCCCCCSCCSTSSSTTTSSSSSS........................HHHHHHHHHHHHTTSSHHHHHHHHH CS
   Ion_trans 129 dllnvlllllvvlfifaligvqlfkgklreknecaktwenpnngntnFdn........................fftallwlfrlmttegwgdilyatl 203
                   +++++ ++++++ +a +g+ +                  ++++ ++d+                        ++ +l+ +f l++  g +di + t 
  KOO21099.1 108 LSIYTFVTAHWFACYWAYLGQCVP-----------------IDPTKEWDTwyvaerntswiekqflqdatptrlYIISLYVSFSLIF-GGPNDINPSTD 188
                 ********************7776.................222222222222223333344577777888888*********9555.56999999999 PP

                 HHSHHHHHHHHHHHHHHHHHHHHHHH CS
   Ion_trans 204 dekskvaliyfvifiilgsflllNll 229
                 +e  +  ++++v+ +++      +++
  KOO21099.1 189 SEY-MAQVTMLVLGCCF-----WAYV 208
                 888.3333333333333.....2222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (415 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       487  (0.0271627); expected 358.6 (0.02)
Passed bias filter:                      397  (0.0221429); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.27s 00:00:00.76 Elapsed: 00:00:00.44
# Mc/sec: 2833.02
//
Query:       KOO21100.1  [L=552]
Description: hypothetical protein Ctob_001431 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (552 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2681  (0.149534); expected 358.6 (0.02)
Passed bias filter:                      547  (0.0305092); expected 358.6 (0.02)
Passed Vit filter:                       148  (0.00825478); expected 17.9 (0.001)
Passed Fwd filter:                        54  (0.00301188); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 1.54u 0.34s 00:00:01.88 Elapsed: 00:00:00.55
# Mc/sec: 3001.71
//
Query:       KOO21101.1  [L=210]
Description: hypothetical protein Ctob_001432 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (210 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1017  (0.0567237); expected 358.6 (0.02)
Passed bias filter:                      589  (0.0328518); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.43u 0.26s 00:00:00.69 Elapsed: 00:00:00.41
# Mc/sec: 1527.35
//
Query:       KOO21102.1  [L=241]
Description: hypothetical protein Ctob_001433 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
     0.0009   19.4   1.6        0.3   11.3   0.1    2.7  2  DUF2475   Protein of unknown function (DUF2475)


Domain annotation for each model (and alignments):
>> DUF2475  Protein of unknown function (DUF2475)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.5   0.1   0.00053       9.5       5      14 ..     102     111 ..      99     117 .. 0.87
   2 !   11.3   0.1   1.7e-05       0.3       5      18 ..     171     184 ..     168     190 .. 0.84

  Alignments for each domain:
  == domain 1  score: 6.5 bits;  conditional E-value: 0.00053
     DUF2475   5 mPGYrGyvPq 14 
                 +PGY+G+ P 
  KOO21102.1 102 IPGYTGHKPH 111
                 8*******97 PP

  == domain 2  score: 11.3 bits;  conditional E-value: 1.7e-05
     DUF2475   5 mPGYrGyvPqvkys 18 
                 mPGY+G+ Pq + +
  KOO21102.1 171 MPGYTGFLPQNREH 184
                 **********8765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (241 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       304  (0.0169558); expected 358.6 (0.02)
Passed bias filter:                      260  (0.0145016); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.26s 00:00:00.69 Elapsed: 00:00:00.43
# Mc/sec: 1692.80
//
Query:       KOO21103.1  [L=281]
Description: mitochondrial carrier family [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      9e-35  118.5   0.8    7.6e-16   57.8   0.0    3.0  3  Mito_carr   Mitochondrial carrier protein
  ------ inclusion threshold ------
      0.045   13.3   0.1      0.081   12.5   0.1    1.4  1  Lys_export  Lysine exporter LysO


Domain annotation for each model (and alignments):
>> Mito_carr  Mitochondrial carrier protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.8   0.1   1.1e-11     1e-07       3      92 ..       3      90 ..       1      95 [. 0.90
   2 !   26.5   0.0     5e-10   4.5e-06       4      95 ..      98     187 ..      95     189 .. 0.91
   3 !   57.8   0.0   8.5e-20   7.6e-16       4      93 ..     192     276 ..     189     279 .. 0.96

  Alignments for each domain:
  == domain 1  score: 31.8 bits;  conditional E-value: 1.1e-11
                HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSTTTSCSSHHHHHHHHHH..HHHHHGGGT.THHHHHHHHHHHHHHHHHHHHHHHHH CS
   Mito_carr  3 lsvlkellaGglagavatlvttPldvvKtrlqtqkksskksksaaildvlkkiyk..eeGlrglyr.Gllpnllrvapasalkfvlyetlkrl 92
                +++++e+laGg + a+ + + +P+dv+Ktr q+ + ++ +     +l+v +k+ +    G+ +l+  Gl++++ r  ++s+++ ++y   + +
  KOO21103.1  3 TTFFREVLAGGGSTAIVSAFLNPVDVIKTRRQLFAYRELS-----ALEVARKLSQegRGGIVALWApGLSATIARELVYSGCTKGVYPIARGF 90
                689******************************9999998.....9********94457******77***************99999776655 PP

  == domain 2  score: 26.5 bits;  conditional E-value: 5e-10
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSTTTSCSSHHHHHHHHHHHHHHHG..GGTTHHHHHHHHHHHHHHHHHHHHHHHHHHCT CS
   Mito_carr   4 svlkellaGglagavatlvttPldvvKtrlqtqkksskksksaaildvlkkiykeeGlrg..lyrGllpnllrvapasalkfvlyetlkrlllk 95 
                 +++++++a+++ g ++++ ++ +dvvK+r   ++ +++     ++l++++ i +eeGl    l rG++++  r a  ++  +++y+ +k +l +
  KOO21103.1  98 TLMQRVAAASATGFTGSIGANAFDVVKIRQFDAPARYEG----GLLSAMRAIAREEGLVTglLLRGCSASAPRGAAIAVGEVTTYDHTKSILRQ 187
                 67899************************9999999887....49*************555799*************************99976 PP

  == domain 3  score: 57.8 bits;  conditional E-value: 8.5e-20
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSTTTSCSSHHHHHHHHHHHHHHHGGGTTHHHHHHHHHHHHHHHHHHHHHHHHHH CS
   Mito_carr   4 svlkellaGglagavatlvttPldvvKtrlqtqkksskksksaaildvlkkiykeeGlrglyrGllpnllrvapasalkfvlyetlkrll 93 
                 +++ +++++++ g+vat+v++P+d++K r +++++ +       +++vl +++++eG ++l+ G+lp+ +r  p + l+f l+e ++r+l
  KOO21103.1 192 GFALHVVVSLITGVVATTVAAPFDLIKSRTMASSDPADG-----FASVLLRLLRHEGPMALFNGWLPTYFRLGPHAILTFPLFEAMRRWL 276
                 678899******************************998.....*******************************************998 PP

>> Lys_export  Lysine exporter LysO
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.1     9e-06     0.081     118     182 ..     142     211 ..     125     217 .. 0.74

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 9e-06
  Lys_export 118 lanllRE..llalllipllakrfgklaaisvaGatsmDttLPiitkssgkev...vvlaivhGvilsllv 182
                 +  ++RE  l++ ll+       ++ aai+v+ +t+ D t  i+++ ++  +   vv+++++Gv+ + ++
  KOO21103.1 142 MRAIAREegLVTGLLLRGCSASAPRGAAIAVGEVTTYDHTKSILRQHYEDGFalhVVVSLITGVVATTVA 211
                 556666644344445555556678889********************98665223799******987654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (281 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       282  (0.0157287); expected 358.6 (0.02)
Passed bias filter:                      233  (0.0129957); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.44u 0.28s 00:00:00.72 Elapsed: 00:00:00.44
# Mc/sec: 1902.31
//
Query:       KOO21104.1  [L=833]
Description: major facilitator family protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.8e-27   96.2  52.4    5.7e-20   71.5  23.2    2.1  2  MFS_1           Major Facilitator Superfamily
    1.2e-16   60.6   0.0    1.9e-16   60.0   0.0    1.2  1  Methyltransf_4  Putative methyltransferase
     0.0045   15.9   7.2     0.0045   15.9   7.2    2.6  2  Sugar_tr        Sugar (and other) transporter
  ------ inclusion threshold ------
       0.05   13.4   1.3      0.084   12.7   1.3    1.4  1  zf-TRM13_CCCH   CCCH zinc finger in TRM13 protein
        1.9    7.3  12.4       0.19   10.5   5.6    2.1  2  MFS_1_like      MFS_1 like family


Domain annotation for each model (and alignments):
>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   71.5  23.2   1.6e-23   5.7e-20       4     293 ..     405     694 ..     402     697 .. 0.77
   2 !   39.5  21.1   8.7e-14   3.1e-10       4     188 ..     617     813 ..     614     832 .. 0.83

  Alignments for each domain:
  == domain 1  score: 71.5 bits;  conditional E-value: 1.6e-23
       MFS_1   4 aaflsalarsilgpalplalaedlgispseigl...lltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllllfa.sslwlllvlrvlqGlg 98 
                 +++l+al + + +p+ p +l e +   +++++    l++++++ ++v+s+++G+l d +G r ++ l +l+ a++ ++ll a +++  +l+l  + +l+
  KOO21104.1 405 LVVLYALCYQLQSPLEP-FLVEKFVKGEDAASSyarLVSFFSFMQIVGSFVVGYLLDVIGLRAMFALNFLSCAAS-YALL-ArATSIEMLFLSKVPALF 500
                 56788888888999999.999999988888777888***************************************.5555.445555699999999999 PP

       MFS_1  99 agalfpagaaliadwfpk.eergraigllsagfslGailgpllggllasslgWravfyilaivsllafvlfllllpeepperkrkspkeeekgtgpapl 196
                 + a+f  ++++ a+++p+ +er+  +g l++++ +G ++gp+lgg l +++  r++ +   ++ ll+++   l  ++e+++   k+++++     pa++
  KOO21104.1 501 Q-AGFLCAQTASAKLTPDgQERATSLGRLTTAYTVGGVIGPALGGHLGTQVAARVAVVGSFAAILLVMM---LPTTVEEVPQDAKRGADK----LPAAV 591
                 7.89999999999999999*****************************777777664444444444333...334555555555555566....44444 PP

       MFS_1 197 vp.....awkallkdpvl...willialllfffgfsglltllplylqevlglsglllaglllallalvgailallagrlsdrlgrrrrlllalllllla 287
                 ++      w  l +   l   w ll++    ++++s++ +  pl+l+e++ ++    +g+++++++l++a+++l +g++   lg +r  ++++l+++++
  KOO21104.1 592 ASsaattNWPRLMRTI-LplvWPLLATKMASGLINSSAGAVRPLLLKERFAFD-QSRLGAFMSAMFLGNAVVGLGLGKITALLGGERSAIVTCLGMMAL 688
                 4423333333333332.12348677777777789999****************.899999********************9999977777777666665 PP

       MFS_1 288 alglal 293
                   +++ 
  KOO21104.1 689 GYAVMA 694
                 555443 PP

  == domain 2  score: 39.5 bits;  conditional E-value: 8.7e-14
       MFS_1   4 aaflsalarsilgpalplalaedlgispseigllltlyalgaavaslplGrlsdrfGrrr.vlllglllfalg.lllll.f....a........sslwl 87 
                 + + s+l  s +g++ pl+l+e + ++ s +g  +++ +lg av  l lG ++  +G  r  ++++l ++alg +++++ f    a         ++wl
  KOO21104.1 617 TKMASGLINSSAGAVRPLLLKERFAFDQSRLGAFMSAMFLGNAVVGLGLGKITALLGGERsAIVTCLGMMALGyAVMAMvFeeafAniaqstphGGVWL 715
                 567788888889999999*************************************975555************66666665765524445555555*** PP

       MFS_1  88 llvlrvlqGlgagalfpagaaliadwfpkeergraigllsagfslGailgpllggllasslgWravfyilaivsllafvlfllllpeepperkrkspke 186
                 +++l +l +l++  l+++  al +  +p++ +g  +g   a+f+l+ ++gp +g ++++++g  a+   +a +++++  l++l+ ++++++ + +++ e
  KOO21104.1 716 FMALTLLLSLFQFPLATTLTALSTSRVPPNLKGTLVGAEHAAFALAGLVGPSAGVAMLQLGG-LAAVASAASLAFVL--LWALWRMDRERDTAASTSSE 811
                 **********************************************************5555.45556666666666..88899999999999999999 PP

       MFS_1 187 ee 188
                 ++
  KOO21104.1 812 DS 813
                 84 PP

>> Methyltransf_4  Putative methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.0   0.0   5.4e-20   1.9e-16       2     131 ..     118     261 ..     117     268 .. 0.88

  Alignments for each domain:
  == domain 1  score: 60.0 bits;  conditional E-value: 5.4e-20
                     -EEEEEET-TTSHHHHHHHHHSTT......SEEEEEES-HHHHHHHHHHHHHC.......TTSSEEEEES-C.CCHHHHCS-TTSEEEEEEES-- CS
  Methyltransf_4   2 apvvleiGcGkGeflvalAkknPd......knflGiEirvkvvakvlkkieal.......elkNlrilrgda.lkvllelledgslekifilFPD 82 
                     apv+l+iGc++G+++++l  + P+      +n +++Eir ++va +++ ++++        +  + + ++ a  + ll  l++ +l+  +++FPD
      KOO21104.1 118 APVHLDIGCARGRWVLELGLEPPEalsqlhVNHVAVEIRADLVADANRVAAEQgvygttaAYVAVDMANNTAhRRALLATLAP-TLRVASVCFPD 211
                     79****************999986333333799***************99999999988777777888888877889999999.9********** PP

                     ---.SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEEESHHHHHHHHHHHHH CS
  Methyltransf_4  83 Pwf.KkrhhKrRllqpellkelarvLkkgGvlelaTDveeyaeemlkvle 131
                     P++ K+r ++ R l+++l  +l ++L  gGv+ +a+D   +ae+m++ le
      KOO21104.1 212 PYPpKRRDERGRTLTRQLALDLYEALPAGGVVFVASDKVHVAEDMCTLLE 261
                     **637777888***********************************9987 PP

>> Sugar_tr  Sugar (and other) transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   7.2   1.3e-06    0.0045      44     120 ..     433     506 ..     408     577 .. 0.79
   2 !    3.2   8.4    0.0089        32      44     181 ..     643     786 ..     616     821 .. 0.73

  Alignments for each domain:
  == domain 1  score: 15.9 bits;  conditional E-value: 1.3e-06
                 ...HHHHHHHTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH-TTTTSS-TGGGGGHHHHHHHHHHHH CS
    Sugar_tr  44 ssvlsglivsiflvGaiiGslfagllgdrfGRkkslliaavlfvigavlqaaakgknsvevlivgRvlvGigvGlas 120
                 +++ +  +vs+f++ +i+Gs+++g+l d++G +  ++   + + ++ +l a a+   s+e+l++++v + + +G+ +
  KOO21104.1 433 AASSYARLVSFFSFMQIVGSFVVGYLLDVIGLRAMFALNFLSCAASYALLARAT---SIEMLFLSKVPALFQAGFLC 506
                 35678899**************************99999999999999999999...********998777777655 PP

  == domain 2  score: 3.2 bits;  conditional E-value: 0.0089
                 ...HHHHHHHTHHHHHHHHHHHHHHHHHHTTHHHHHHH.HHHHHHHHHHHHH-TTTT...........SS-TGGGGGHHHHHHH.HHHHHHHHHHHHHT CS
    Sugar_tr  44 ssvlsglivsiflvGaiiGslfagllgdrfGRkkslli.aavlfvigavlqaaakgk...........nsvevlivgRvlvGig.vGlasvlvPmyisE 129
                  ++++g+++s++++G ++ +l +g+++  +G   s ++ +  ++  g +++a+  ++             v+++++  +l+ ++   la++l+ + +s 
  KOO21104.1 643 DQSRLGAFMSAMFLGNAVVGLGLGKITALLGGERSAIVtCLGMMALGYAVMAMVFEEafaniaqstphGGVWLFMALTLLLSLFqFPLATTLTALSTSR 741
                 46899************************9865555552777888899999888766788888888887888888877776654156666666666666 PP

                 TS-SCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTSS-TTHHHHHHHCCHHHH CS
    Sugar_tr 130 iApkklRgalvslyqlaitfGilvaaifglglnktsnadgwrillglqlvpa 181
                 + p++l g+lv+    a ++  lv+   g+++ + ++      l +++++ +
  KOO21104.1 742 V-PPNLKGTLVGAEHAAFALAGLVGPSAGVAMLQLGG------LAAVASAAS 786
                 6.88889999999988888888888888887766666......333333333 PP

>> zf-TRM13_CCCH  CCCH zinc finger in TRM13 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   1.3   2.3e-05     0.084       2      28 ..      13      40 ..      12      41 .. 0.93

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 2.3e-05
  zf-TRM13_CCCH  2 rCeffipnKkRfC.kmtrkkgsryCgeH 28
                   rC+++i +  R C  m    g+ +C++H
     KOO21104.1 13 RCAHWIRRQERLCtSMVIQTGEHFCSQH 40
                   9************66999********** PP

>> MFS_1_like  MFS_1 like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   5.6   5.4e-05      0.19     227     375 ..     402     548 ..     391     557 .. 0.84
   2 ?    0.6   0.5     0.056     2e+02     155     234 ..     687     762 ..     645     772 .. 0.80

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 5.4e-05
  MFS_1_like 227 viifllvalilgmswgiienFl.flYLkelgasntllGslvalgvvaeiplfffaeklleklGhvklliiallayilrfllyaiienawlvlpievLhg 324
                 v ++++  +++  + +++e Fl + + k  +a ++    lv +  +++i+  f+  +ll+ +G++ +  + +l+ ++ + l+a  ++  ++++  v  +
  KOO21104.1 402 VYALVVLYALCYQLQSPLEPFLvEKFVKGEDAASS-YARLVSFFSFMQIVGSFVVGYLLDVIGLRAMFALNFLSCAASYALLARATSIEMLFLSKV--P 497
                 56777788888899999999972456666666555.56788899999999999***************************************9998..6 PP

  MFS_1_like 325 isfgllwaaaveyvskiapksle.atgqgllsglyfglGralGsliGGllwd 375
                 + f + ++ a + ++k++p++ e at  g l+++ + +G+ +G  +GG l  
  KOO21104.1 498 ALFQAGFLCAQTASAKLTPDGQErATSLGRLTTA-YTVGGVIGPALGGHLGT 548
                 6777778899999******987549999999988.689**********8764 PP

  == domain 2  score: 0.6 bits;  conditional E-value: 0.056
  MFS_1_like 155 svGyaifafitGilidhysvnllpysallyvlaallvisllvvlilnetekesklkvtkslqvllnilknpeviifllva 234
                 ++Gya++a+++  ++  +  ++ p +  + +++al ++ +l+   ++  +  ++l    ++ +l+ +l   e ++f l+ 
  KOO21104.1 687 ALGYAVMAMVFEEAFANIAQST-P-HGGVWLFMALTLLLSLF--QFPLATTLTALSTSRVPPNLKGTLVGAEHAAFALAG 762
                 7899999999888888888866.5.35555555555554444..588888888888888888888888888888888765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (833 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       737  (0.0411066); expected 358.6 (0.02)
Passed bias filter:                      370  (0.020637); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.69u 0.26s 00:00:00.95 Elapsed: 00:00:00.42
# Mc/sec: 5969.48
//
Query:       KOO21105.1  [L=151]
Description: NAD dependent epimerase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.6e-24   87.0   0.2    4.6e-24   85.5   0.2    1.6  1  Sulfotransfer_4  Sulfotransferase domain
     0.0011   19.4   0.0     0.0015   19.0   0.0    1.2  1  Sulfotransfer_3  Sulfotransferase family


Domain annotation for each model (and alignments):
>> Sulfotransfer_4  Sulfotransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   85.5   0.2   5.1e-28   4.6e-24      67     202 ..       8     128 ..       5     150 .. 0.85

  Alignments for each domain:
  == domain 1  score: 85.5 bits;  conditional E-value: 5.1e-28
  Sulfotransfer_4  67 ggydavvdvpaalfaeelleayPdakvIlteRdpekWlksmkktllalrsetlsrllalldpllellaklvellralvrrlfgagsdaedeeaa 160
                      ++++av+d+p++ f++e+l  yP+akvIlt R+p++Wl+s +k    + + ++    ++l+p           +r+  + ++g+  +  ++e+a
       KOO21105.1   8 KHVEAVLDTPVVDFWNEILLSYPRAKVILTIRNPRSWLRSQQKFYSGFARGCR----KWLEP-----------WRRGSNLVYGT--ECPSKEQA 84 
                      5899***************************************9999996644....45666...........44444555666..4689**** PP

  Sulfotransfer_4 161 keayeehnervrevvpaerlLvykvk..dGWepLceFLgkpvPd 202
                       + y +hn++v + vp+erlL ++++  dGWe+Lc F+g + P 
       KOO21105.1  85 IKRYVQHNRNVFDSVPPERLLIMDMTggDGWEKLCPFMGLDPPV 128
                      **********************99964479**********9886 PP

>> Sulfotransfer_3  Sulfotransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.0   0.0   1.7e-07    0.0015     117     190 ..      23     106 ..       7     109 .. 0.70

  Alignments for each domain:
  == domain 1  score: 19.0 bits;  conditional E-value: 1.7e-07
                      HHHHHHBSSEEEEEEE--H.HHHHHHHHHTT--------.........--..-.HHHHHHHHHHHHHHHHHHHHHH....S-TTSEEE CS
  Sulfotransfer_3 117 dlllelfPdAkfihlvRdpvdtvlssyvslfgkkresys.........edsld.eledaleewarayerllaarar....lppdrfld 190
                       ++l  +P Ak+i ++R+p ++ l+s  ++++   +  +         +   +  +++++   ++a++r+ ++ ++    +pp+r+l 
       KOO21105.1  23 NEILLSYPRAKVILTIRNP-RSWLRSQQKFYSGFARGCRkwlepwrrgS---NlVYGTECPSKEQAIKRYVQHNRNvfdsVPPERLLI 106
                      578999*************.99999988887666555553333332222...234444455566677777777777777788887765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (151 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       337  (0.0187964); expected 358.6 (0.02)
Passed bias filter:                      304  (0.0169558); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.43u 0.24s 00:00:00.67 Elapsed: 00:00:00.44
# Mc/sec: 1039.56
//
Query:       KOO21106.1  [L=96]
Description: RNA superfamily protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.078   12.8   0.0       0.11   12.4   0.0    1.3  1  T2SSM_b   Type II secretion system (T2SS), protein M subtype 


Domain annotation for each model (and alignments):
>> T2SSM_b  Type II secretion system (T2SS), protein M subtype b
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   5.9e-06      0.11       5      41 ..       3      39 ..       1      49 [. 0.87

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 5.9e-06
     T2SSM_b  5 aflegataslagaalqqrvralvsaaggsltssqvlp 41
                 f e+ ++s+a+a ++qr+ ++++++ g+l +++++ 
  KOO21106.1  3 GFTESFNVSVAAALVLQRLLDAAHESRGQLPAAELAA 39
                5788999***********************9998765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (96 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       398  (0.0221987); expected 358.6 (0.02)
Passed bias filter:                      260  (0.0145016); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.27s 00:00:00.63 Elapsed: 00:00:00.42
# Mc/sec: 693.10
//
Query:       KOO21107.1  [L=368]
Description: glycoside hydrolase family protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.4e-50  170.2   0.5    6.6e-50  170.0   0.5    1.0  1  BNR_2     BNR repeat-like domain
  ------ inclusion threshold ------
      0.016   15.1   1.7          3    8.2   1.4    3.0  2  BNR       BNR/Asp-box repeat
       0.23   10.6   0.1       0.54    9.4   0.0    1.4  2  DUF3498   Domain of unknown function (DUF3498)


Domain annotation for each model (and alignments):
>> BNR_2  BNR repeat-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  170.0   0.5   1.1e-53   6.6e-50       3     273 ..      67     339 ..      65     345 .. 0.89

  Alignments for each domain:
  == domain 1  score: 170.0 bits;  conditional E-value: 1.1e-53
                 EEEEEESSSSGGGEEEEEEEEEE.TTEEE.EEEEEE-TTS-...BTTEEEEEEEEEEETTTEEEEEEEEEETT--HHT----EEEESS.....TTSS-- CS
       BNR_2   3 Llaawfggsregapdvaiwvsvs.dkgsneWsapqvvadreqsrearkklgNPvlfqdpsgtliLfykvgvsvggwagskitrvtSkD.....dGktWs 95 
                 L  +wf+g++ega  v+i  + + +++s  Ws++ v++ r+     + + +NPvl + ++g l+Lf+++++  +g+  +++ +  + D      G  Ws
  KOO21107.1  67 LAMVWFSGTKEGADNVSIVIAHLtTANSLAWSTAFVISRRP-----GYSNQNPVLHTSQDGSLHLFHSSQPASQGEDNASVWTAVAPDgigaaPG-MWS 159
                 7789*****************88667788***********9.....**************************99999999777888886555333.6** PP

                 --EHHHGGEEEEEE-SS--...EE--T--EEEE.EE..SS--.EEEEEEEESSTTSS.-EE----SSSEEEEEEEE.EEETT..EEEEEEEE....EEE CS
       BNR_2  96 aprrlpkspflnisgpvknkp.iqladGrlilP.sshelagk.wrallelsddggkt.Wkkgrvveqisgeiqpsilvekdg..slvalaRsrka.ail 187
                 +p+++  +    +  + kn++ ++l++ +++lP ++ +  ++   +++++s+  g+  W   ++  ++s+ +qp+++++ +g  +l+a++R+r a +i+
  KOO21107.1 160 QPEEIFSK----AGSFTKNRVlFALDNSTWLLPmYYATGPNDdQYSHIKTSNTLGQGpWGNLDFK-DTSHLVQPTVIRSRSGypRLTAFFRDRDAaHIY 253
                 ******99....9999999873567799*****6555544442668899999988889******9.778***********************5555*** PP

                 EEEESSTTSS-EEE-EEEEE----.......---SEEEEEEEE--SSEEEEEEESTT-GGG----EEEEEEE...EEEEEEEEEEE CS
       BNR_2 188 eseSedgGetWskveltslpnpnsgidavtlkdgrlllvyNhesapRkpLtvalskdngkswkevltLekgpkseysYPsliqaed 273
                 +++S d+G++W+ + +t lpn+n+gi+a +l+dgr+++v N++++ R+ L++als+d+g +w    +Le++ ++e+sYP+l+q++ 
  KOO21107.1 254 RATSDDDGKSWTSPAATPLPNNNAGIQACQLQDGRVAMVFNPTTKSRSLLAIALSEDEGLTWPHQRLLENETSGEFSYPTLFQDAV 339
                 *****************************************88888************************************9865 PP

>> BNR  BNR/Asp-box repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.2   1.4    0.0005         3       2      11 ..     256     265 ..     255     266 .. 0.90
   2 ?    3.8   0.0     0.014        83       3      10 ..     308     315 ..     306     315 .. 0.91

  Alignments for each domain:
  == domain 1  score: 8.2 bits;  conditional E-value: 0.0005
                 EESSTTSS-E CS
         BNR   2 yStDgGktWs 11 
                 +S+D Gk+W+
  KOO21107.1 256 TSDDDGKSWT 265
                 6********7 PP

  == domain 2  score: 3.8 bits;  conditional E-value: 0.014
                 ESSTTSS- CS
         BNR   3 StDgGktW 10 
                 S D G tW
  KOO21107.1 308 SEDEGLTW 315
                 99****** PP

>> DUF3498  Domain of unknown function (DUF3498)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   0.0     9e-05      0.54     183     278 ..     108     196 ..      50     214 .. 0.77
   2 ?   -2.3   0.0      0.32   1.9e+03      68     114 ..     243     290 ..     217     327 .. 0.68

  Alignments for each domain:
  == domain 1  score: 9.4 bits;  conditional E-value: 9e-05
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXXX. CS
     DUF3498 183 PLSFqNPvYhlaaslpvspahklsedsssetesslsshsnsedlssaakskksilsssslseefarrsteftrRqlsltekqhqvavprqnsagpt 278
                   S qNPv h +++++++  h+ +  s  e ++s+      + +++a       +   s  ee+  ++++ft+ ++    ++++ ++p   ++gp+
  KOO21107.1 108 GYSNQNPVLHTSQDGSLHLFHSSQPASQGEDNASVWTAVAPDGIGAA-------PGMWSQPEEIFSKAGSFTKNRVLFALDNSTWLLPMYYATGPN 196
                 4799**************************9***9999999999666.......455677888888888999877766645556888888888884 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 0.32
                 XXXXXXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
     DUF3498  68 ffvsrspll.qqsparstsysdaeerdqklpngnkSvSlvDLQdsrsl 114
                 ff+ r +     + +     s +    ++lpn n  +    LQd r++
  KOO21107.1 243 FFRDRDAAHiYRATSDDDGKSWTSPAATPLPNNNAGIQACQLQDGRVA 290
                 444444443355555666666667777889999999999999998885 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (368 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       251  (0.0139997); expected 358.6 (0.02)
Passed bias filter:                      228  (0.0127168); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.44u 0.25s 00:00:00.69 Elapsed: 00:00:00.39
# Mc/sec: 2813.67
//
Query:       KOO21108.1  [L=51]
Description: hypothetical protein Ctob_001976 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (51 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       160  (0.00892409); expected 358.6 (0.02)
Passed bias filter:                      134  (0.00747392); expected 358.6 (0.02)
Passed Vit filter:                         8  (0.000446204); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.25s 00:00:00.57 Elapsed: 00:00:00.39
# Mc/sec: 394.06
//
Query:       KOO21109.1  [L=724]
Description: hypothetical protein Ctob_001971 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    5.5e-54  182.1   0.1    6.9e-38  130.1   0.0    2.4  2  AAA              ATPase family associated with various cellul
    8.2e-11   41.5   0.1    1.8e-10   40.4   0.1    1.6  1  AAA_lid_3        AAA+ lid domain
    1.1e-09   38.0   0.1     0.0012   18.2   0.0    2.2  2  TIP49            TIP49 P-loop domain
    1.5e-09   38.3   0.9     0.0047   17.2   0.1    4.1  3  AAA_22           AAA domain
      8e-09   35.6   0.2    5.6e-05   23.2   0.0    3.0  2  AAA_5            AAA domain (dynein-related subfamily)
      1e-07   32.0   0.0    3.2e-07   30.4   0.0    1.9  1  CDC48_N          Cell division protein 48 (CDC48), N-terminal
    2.4e-07   31.3   0.3      0.019   15.4   0.0    2.8  2  AAA_16           AAA ATPase domain
    3.8e-07   30.4   1.2    6.3e-05   23.2   0.4    2.9  3  AAA_2            AAA domain (Cdc48 subfamily)
    1.8e-06   28.0   0.4      0.015   15.3   0.1    2.5  2  TsaE             Threonylcarbamoyl adenosine biosynthesis pro
    2.5e-06   27.3   0.1      0.021   14.6   0.0    2.8  2  RuvB_N           Holliday junction DNA helicase RuvB P-loop d
      7e-06   25.6   0.6     0.0055   16.1   0.1    2.5  2  Mg_chelatase     Magnesium chelatase, subunit ChlI
      8e-06   26.4   0.0      0.092   13.3   0.0    2.9  2  AAA_18           AAA domain
    2.1e-05   24.6   0.0       0.23   11.5   0.0    2.6  2  AAA_14           AAA domain
    7.6e-05   22.5   0.1       0.52   10.0   0.0    2.7  2  Sigma54_activat  Sigma-54 interaction domain
    0.00015   22.0   0.0       0.71   10.0   0.0    2.5  2  AAA_33           AAA domain
    0.00015   21.6   0.1      0.034   13.9   0.0    2.7  2  AAA_24           AAA domain
    0.00019   21.0   1.2      0.029   13.9   0.1    2.9  3  AAA_7            P-loop containing dynein motor region
     0.0002   21.4   3.9        7.7    6.3   0.1    4.2  4  ATPase_2         ATPase domain predominantly from Archaea
    0.00027   20.7   0.0       0.24   11.1   0.0    2.6  2  IstB_IS21        IstB-like ATP binding protein
    0.00041   20.4   0.0        1.4    8.9   0.0    2.6  2  ResIII           Type III restriction enzyme, res subunit
    0.00099   19.1   2.9       0.67    9.8   0.1    3.5  3  NACHT            NACHT domain
     0.0011   18.3   0.2        1.2    8.3   0.2    3.0  2  NB-ARC           NB-ARC domain
     0.0011   18.5   0.4        1.3    8.4   0.0    2.6  2  PhoH             PhoH-like protein
     0.0011   19.4   0.3      0.061   13.8   0.1    2.6  2  ABC_tran         ABC transporter
     0.0012   19.2   0.0       0.16   12.4   0.0    2.6  2  RNA_helicase     RNA helicase
     0.0013   18.1   1.8      0.028   13.8   0.1    3.1  3  ATPase           KaiC
     0.0019   18.0   3.3        2.2    8.0   0.0    4.1  4  DEAD             DEAD/DEAH box helicase
     0.0036   17.6   0.1        4.3    7.6   0.0    2.4  2  AAA_28           AAA domain
     0.0041   17.0   0.0       0.22   11.4   0.0    2.8  2  AAA_3            ATPase family associated with various cellul
     0.0056   16.4   0.3        1.1    8.9   0.1    2.5  2  AAA_30           AAA domain
     0.0057   16.4   0.0       0.11   12.3   0.0    2.7  2  CDC48_2          Cell division protein 48 (CDC48), domain 2
     0.0058   16.6   0.7        9.8    6.1   0.1    3.8  4  Rad17            Rad17 P-loop domain
     0.0075   16.1   0.1       0.33   10.7   0.0    2.3  2  AAA_11           AAA domain
  ------ inclusion threshold ------
      0.012   15.3   2.9        2.7    7.5   0.0    3.3  3  AAA_25           AAA domain
       0.02   13.9   0.0        2.5    7.1   0.0    2.5  2  T2SSE            Type II/IV secretion system protein
      0.026   13.6   0.0       0.69    8.9   0.0    2.1  2  Parvo_NS1        Parvovirus non-structural protein NS1
      0.029   14.8   0.3         20    5.6   0.0    3.3  3  AAA_17           AAA domain
      0.032   13.1   0.0        3.7    6.3   0.0    2.3  2  AFG1_ATPase      AFG1-like ATPase
      0.046   14.1   1.3       0.81   10.0   0.2    3.1  3  AAA_19           AAA domain
      0.049   13.0   0.2          2    7.7   0.0    2.9  3  IPT              Isopentenyl transferase
      0.063   12.7   1.3        7.4    5.9   0.0    3.6  4  TniB             Bacterial TniB protein
      0.078   12.7   0.1         14    5.5   0.0    2.6  2  AAA_29           P-loop containing region of AAA domain
       0.08   12.7   0.1        4.3    7.0   0.0    2.4  2  Cytidylate_kin   Cytidylate kinase
       0.11   12.3   0.1       0.33   10.8   0.0    1.8  2  dNK              Deoxynucleoside kinase
        0.2   10.8   1.6        2.1    7.5   0.1    2.7  2  DUF2075          Uncharacterized conserved protein (DUF2075)
       0.36   10.6   1.2        4.3    7.1   0.0    2.7  3  AAA_21           AAA domain, putative AbiEii toxin, Type IV T


Domain annotation for each model (and alignments):
>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  130.1   0.0   1.8e-40   6.9e-38       1     131 [.     248     389 ..     248     390 .. 0.92
   2 !   49.8   0.0   1.1e-15   4.3e-13       1     129 [.     528     654 ..     528     657 .. 0.87

  Alignments for each domain:
  == domain 1  score: 130.1 bits;  conditional E-value: 1.8e-40
                 EEEESSTTSSHHHHHHHHHHHHT.HEEEEEETTTCSSSSTTHHHHHHHHHHHHHHHTS.......TSEEEEEETGGGHHHHH...TTCCCHHHHHHHHH CS
         AAA   1 vllyGppGtGKTllakavakelg.vefleisgsellskyvgesekkirelfkeakeka.......kpsilfiDEidalaksr...sgseseeeervvnq 88 
                 +llyGppGtGKTl+a+++ k l+  e   ++g+e+lsk+vgese+++r+lf++a+ +        + +i+++DEid+++k+r     ++++++++vvnq
  KOO21109.1 248 MLLYGPPGTGKTLIARQIGKMLNgKEPKIVNGPEILSKFVGESEANVRKLFEDAELEMkergddsDLHIIIFDEIDSVCKQRgsgGAGSTGVGDTVVNQ 346
                 89********************65889**************************95444456799667***************98666799********* PP

                 HHHHHHHTTTSSSTEEEEEEESSGGGSTHHHHS.TTSSEEEETT CS
         AAA  89 Llteldgvkkkeskvivigatnrpdkldpallr.gRfdrkieie 131
                 +l+++dgv+   +++++ig+tnr d++d+allr gR+++++ei+
  KOO21109.1 347 MLSKIDGVNAL-NNILLIGMTNRKDMIDDALLRpGRLEVHVEIS 389
                 **********7.66***************************997 PP

  == domain 2  score: 49.8 bits;  conditional E-value: 1.1e-15
                 EEEESSTTSSHHHHHHHHHHHHTHEEEEEETTTCS.SSSTTHHHHHHHHHHHHHHHTSTS.EEEEEETGGGHHHHHTTCCCHHHHHHHHHHHHHHHHTT CS
         AAA   1 vllyGppGtGKTllakavakelgvefleisgsell.skyvgesekkirelfkeakekakp.silfiDEidalaksrsgseseeeervvnqLlteldgvk 97 
                 +ll Gp G GKT+la  +a  +g++f+++ +++ l  +   ++++ i+ +f++a ++  p s +++DE+++l +   +   ++++ v+++L+t +++v 
  KOO21109.1 528 ILLEGPVGSGKTALAATLALRSGFPFVKLLAPTSLvGMGETQKAAVIARVFDDAYKS--PlSLIVLDEVERLLEYV-RIGPRFSNVVLQTLITCIKKVP 623
                 699****************************99885777777777899999998776..55***********9998.7899****************** PP

                 TSSSTEEEEEEESSGGGSTHHHHSTTSSEEEE CS
         AAA  98 kkeskvivigatnrpdkldpallrgRfdrkie 129
                 kk sk+iv+++t +  +l++  l++ f++ ++
  KOO21109.1 624 KK-SKLIVLATTSSLATLESLELLDAFNVTLH 654
                 *6.77********9999987655477766665 PP

>> AAA_lid_3  AAA+ lid domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.4   0.1   4.7e-13   1.8e-10       1      44 [.     416     471 ..     416     472 .. 0.80

  Alignments for each domain:
  == domain 1  score: 40.4 bits;  conditional E-value: 4.7e-13
   AAA_lid_3   1 dvdlkeLAerTeGySGADlaalcreAallAlrr...........gik.eitmedfe 44 
                 dvdl+ LA++T+++SGA+++ l+++Aa  A +r           +++ ++t +dfe
  KOO21109.1 416 DVDLQVLASETKNFSGAEIEGLVKAAASYAFSRqvqvdniksvnVEElQVTRADFE 471
                 9*******************************977777555553233247777776 PP

>> TIP49  TIP49 P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5   0.0   4.8e-06    0.0019      50     114 ..     245     308 ..     227     322 .. 0.87
   2 !   18.2   0.0     3e-06    0.0012      33     102 ..     508     577 ..     493     586 .. 0.82

  Alignments for each domain:
  == domain 1  score: 17.5 bits;  conditional E-value: 4.8e-06
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX- CS
       TIP49  50 GravLlaGpsgtGktalaiaiskelgedvpfvalsgsevyslevkktevltqalrksigvrikee 114
                  +++Ll Gp+gtGkt +a  i k l+ + p  +++g e+ s  v  +e+ +++l     + +ke+
  KOO21109.1 245 VKGMLLYGPPGTGKTLIARQIGKMLNGKEP-KIVNGPEILSKFVGESEANVRKLFEDAELEMKER 308
                 3789**********************8888.679**************99999988888888886 PP

  == domain 2  score: 18.2 bits;  conditional E-value: 3e-06
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX..XXXXXXXXXXXXXXXXX CS
       TIP49  33 reaagvivelikekklaGravLlaGpsgtGktalaiaiskelgedvpfvalsg..sevyslevkktevltqa 102
                 + aa++i +l ++++    ++Ll Gp g+Gktala +++  l +  pfv+l +  s v   e +k+ v+ + 
  KOO21109.1 508 QSAASLISQLQQSERTPLLSILLEGPVGSGKTALAATLA--LRSGFPFVKLLAptSLVGMGETQKAAVIARV 577
                 569999*********9999****************9997..66779**998763255666777777777665 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   0.1   1.2e-05    0.0047       8      70 ..     248     311 ..     242     372 .. 0.80
   2 !   10.2   0.1    0.0017      0.68       7      28 ..     527     548 ..     523     562 .. 0.86
   3 ?    6.2   0.0     0.029        11      74     121 ..     569     624 ..     553     640 .. 0.67

  Alignments for each domain:
  == domain 1  score: 17.2 bits;  conditional E-value: 1.2e-05
      AAA_22   8 lvvtGesGtGKTtllrrlleqldeeakaee.erpevv.fvtlpsstsskdllrellralglelka 70 
                 ++++G++GtGKT+ +r++ + l+  ++++  ++pe++ ++   s+ + ++l+++   ++++++++
  KOO21109.1 248 MLLYGPPGTGKTLIARQIGKMLN-GKEPKIvNGPEILsKFVGESEANVRKLFEDAELEMKERGDD 311
                 789******************94.55555578888888777777778999988888888877766 PP

  == domain 2  score: 10.2 bits;  conditional E-value: 0.0017
      AAA_22   7 ilvvtGesGtGKTtllrrlleq 28 
                 ++++ G++G+GKT l+++l+ +
  KOO21109.1 527 SILLEGPVGSGKTALAATLALR 548
                 68999*************9876 PP

  == domain 3  score: 6.2 bits;  conditional E-value: 0.029
      AAA_22  74 sseellealeqalraravielliiDEaqhlr.........seealeeLrsllnlsrk 121
                 ++ ++++++ + + +    +l+++DE+++l          s+ +l++L ++ +   k
  KOO21109.1 569 QKAAVIARVFDDAYKSPL-SLIVLDEVERLLeyvrigprfSNVVLQTLITCIKKVPK 624
                 555566666666666677.9*********7657766554448888888888775333 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.2   0.0   1.4e-07   5.6e-05       2      76 ..     248     324 ..     247     328 .. 0.87
   2 !    9.3   0.2    0.0026         1       2      26 ..     528     552 ..     527     600 .. 0.85

  Alignments for each domain:
  == domain 1  score: 23.2 bits;  conditional E-value: 1.4e-07
                 EEEE--SSSSHHHHHHHGGGGB.S--EEEEE--TT--HHHHH--B--.........--------....G-SEEEEESGGG CS
       AAA_5   2 vlLvGppGtgKselaerlaaal.nreveyvqltrdtteedlkgrreikngttslvdsplvraar....egeilvlDEver 76 
                 +lL GppGtgK+ +a+++ ++l ++e  +v++++ ++  +++g+ e  n ++ ++d +l  + r      +i+++DE++ 
  KOO21109.1 248 MLLYGPPGTGKTLIARQIGKMLnGKEPKIVNGPEILS--KFVGESEA-NVRKLFEDAELEMKERgddsDLHIIIFDEIDS 324
                 79********************999999**9999765..69999995.99999999999866668999999999999985 PP

  == domain 2  score: 9.3 bits;  conditional E-value: 0.0026
                 EEEE--SSSSHHHHHHHGGGGBS-- CS
       AAA_5   2 vlLvGppGtgKselaerlaaalnre 26 
                 +lL Gp G+gK+ la  la + + +
  KOO21109.1 528 ILLEGPVGSGKTALAATLALRSGFP 552
                 79**************998766555 PP

>> CDC48_N  Cell division protein 48 (CDC48), N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.4   0.0   8.1e-10   3.2e-07       2      82 ..       3      79 ..       2      82 .. 0.95

  Alignments for each domain:
  == domain 1  score: 30.4 bits;  conditional E-value: 8.1e-10
                EEEECCS.S-CSSTTEEEE-HHHHHHHTS-TTSEEEEECCCCEEEEEEEBSTTST.TTTEEEE-HHHHHHHT--TTEEEEEEE CS
     CDC48_N  2 LrVaeap.qedvgrgivridpedmeelglepgdvveiegkrkTvaivwpaepede.gkgiIrmdgvtRknagvsiGdkVtVrk 82
                L+Va+ap q ++ +++v++ +++++ lg  +  + ei+g      ++++++p+d  + ++I +++++R+ + vs G++ tV  
  KOO21109.1  3 LTVANAPsQGLAFTNCVYVTQSTLSTLGGDKELYGEIKG------LIYTLKPHDGmQANCIGLNSIQRRILSVSAGETLTVAV 79
                89***********************************96......78*******99************************975 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.0   4.8e-05     0.019      25      51 ..     246     272 ..     234     321 .. 0.84
   2 !   12.9   0.2   0.00027       0.1      20      45 ..     518     546 ..     503     650 .. 0.77

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 4.8e-05
      AAA_16  25 elvllsGesGvGKsslvrellralekd 51 
                   +ll+G++G+GK+ ++r++ + l+++
  KOO21109.1 246 KGMLLYGPPGTGKTLIARQIGKMLNGK 272
                 679***************998877766 PP

  == domain 2  score: 12.9 bits;  conditional E-value: 0.00027
      AAA_16  20 rsgrp...elvllsGesGvGKsslvrell 45 
                  +++     ++ll G+ G+GK++l+ +l+
  KOO21109.1 518 QQSERtplLSILLEGPVGSGKTALAATLA 546
                 333333489****************9887 PP

>> AAA_2  AAA domain (Cdc48 subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.2   0.4   1.6e-07   6.3e-05       6     104 ..     248     352 ..     243     359 .. 0.70
   2 ?    1.8   0.0      0.58   2.2e+02       9      41 ..     334     366 ..     333     373 .. 0.82
   3 ?    4.6   0.0     0.081        32       2      24 ..     524     546 ..     523     599 .. 0.86

  Alignments for each domain:
  == domain 1  score: 23.2 bits;  conditional E-value: 1.6e-07
                 EEEE--TTSSHHHHHHHHHHHTT-....-EEEEEGGG---..----THHHHHHHHHTTT-HHHHTTS......EEEEETGGG----...---------H CS
       AAA_2   6 illlgptgvGktelakalaellfvkkekkliradaselle..eeevehlvsrligappgyvgaeegG......ivllDEidKihpk...essgadvSre 93 
                 +ll gp g+Gkt++a+++ ++l+ +k  +  +++  e+l     e+e  v +l   +    + +e+G      i+ +DEid ++++   + +g+   ++
  KOO21109.1 248 MLLYGPPGTGKTLIARQIGKMLN-GK--EPKIVNGPEILSkfVGESEANVRKLFEDA--ELEMKERGddsdlhIIIFDEIDSVCKQrgsGGAGSTGVGD 341
                 7899******************9.33..44444555555534456677777776555..55667888889***************98553333333345 PP

                 HHHHHHHHHHH CS
       AAA_2  94 gVqrdLLqile 104
                  V++ +L  ++
  KOO21109.1 342 TVVNQMLSKID 352
                 56666666555 PP

  == domain 2  score: 1.8 bits;  conditional E-value: 0.58
                 E--TTSSHHHHHHHHHHHTT-....-EEEEEGG CS
       AAA_2   9 lgptgvGktelakalaellfvkkekkliradas 41 
                 +g+tgvG t ++++l+++  v+  +++  + ++
  KOO21109.1 334 AGSTGVGDTVVNQMLSKIDGVNALNNILLIGMT 366
                 689**************9998777776666665 PP

  == domain 3  score: 4.6 bits;  conditional E-value: 0.081
                 ----EEEE--TTSSHHHHHHHHH CS
       AAA_2   2 piisilllgptgvGktelakala 24 
                 p+ sill gp g+Gkt la +la
  KOO21109.1 524 PLLSILLEGPVGSGKTALAATLA 546
                 6789***************9998 PP

>> TsaE  Threonylcarbamoyl adenosine biosynthesis protein TsaE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.2   0.0    0.0015      0.58      21      46 ..     242     272 ..     224     282 .. 0.71
   2 !   15.3   0.1   3.9e-05     0.015       5      46 ..     504     552 ..     499     571 .. 0.74

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.0015
                 E.....EEEEESTTSSHHHHHHHHHHHTT-- CS
        TsaE  21 v.....ilLeGdLGaGKTtlvrglakalgve 46 
                 v     +lL+G+ G+GKT ++r++ k l+ +
  KOO21109.1 242 VrhvkgMLLYGPPGTGKTLIARQIGKMLNGK 272
                 0223449******************999654 PP

  == domain 2  score: 15.3 bits;  conditional E-value: 3.9e-05
                 HHHHHHHHHHHHCHTEE.......EEEEESTTSSHHHHHHHHHHHTT-- CS
        TsaE   5 eetealgkklakalgdv.......ilLeGdLGaGKTtlvrglakalgve 46 
                 +++++ +++l ++l++        ilLeG++G+GKT+l+  la   g+ 
  KOO21109.1 504 KQLQQSAASLISQLQQSertpllsILLEGPVGSGKTALAATLALRSGFP 552
                 566677777777663323456778***************9999877765 PP

>> RuvB_N  Holliday junction DNA helicase RuvB P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.6   0.0   5.4e-05     0.021      32      69 ..     244     282 ..     229     297 .. 0.79
   2 !    9.5   0.0    0.0019      0.75      28      67 ..     520     559 ..     501     602 .. 0.64

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 5.4e-05
      RuvB_N  32 aldhvllyGpPGlGkttlakiiakelgv.klkitsgPvl 69 
                 ++  +llyGpPG Gkt +a+ i k l+  + ki  gP +
  KOO21109.1 244 HVKGMLLYGPPGTGKTLIARQIGKMLNGkEPKIVNGPEI 282
                 34457******************9997515688888876 PP

  == domain 2  score: 9.5 bits;  conditional E-value: 0.0019
      RuvB_N  28 kreealdhvllyGpPGlGkttlakiiakelgvklkitsgP 67 
                 + +++l  +ll Gp G Gkt+la+ +a   g  +    +P
  KOO21109.1 520 SERTPLLSILLEGPVGSGKTALAATLALRSGFPFVKLLAP 559
                 455677889****************998877665444444 PP

>> Mg_chelatase  Magnesium chelatase, subunit ChlI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.1   1.4e-05    0.0055      24      47 ..     247     270 ..     233     290 .. 0.86
   2 !    7.2   0.0    0.0075       2.9      24      43 ..     527     546 ..     525     581 .. 0.88

  Alignments for each domain:
  == domain 1  score: 16.1 bits;  conditional E-value: 1.4e-05
  Mg_chelatase  24 nlllvGppGsGKtmlakrlpsllp 47 
                    +ll+GppG+GKt++a+++ ++l 
    KOO21109.1 247 GMLLYGPPGTGKTLIARQIGKMLN 270
                   58****************999986 PP

  == domain 2  score: 7.2 bits;  conditional E-value: 0.0075
  Mg_chelatase  24 nlllvGppGsGKtmlakrlp 43 
                   ++ll Gp GsGKt la+ l+
    KOO21109.1 527 SILLEGPVGSGKTALAATLA 546
                   589*************9874 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.3   0.0   0.00024     0.092       2      37 ..     249     303 ..     248     326 .. 0.73
   2 !   10.0   0.0    0.0025      0.99       1      24 [.     528     551 ..     528     633 .. 0.81

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 0.00024
      AAA_18   2 lltGtpGvGKttlakeLskrlgf...................gvnlrdvakengl 37 
                 ll G+pG+GKt +a+ + k+l+                      n+r+++ + +l
  KOO21109.1 249 LLYGPPGTGKTLIARQIGKMLNGkepkivngpeilskfvgesEANVRKLFEDAEL 303
                 689*****************83357777777666666666665666666555555 PP

  == domain 2  score: 10.0 bits;  conditional E-value: 0.0025
      AAA_18   1 IlltGtpGvGKttlakeLskrlgf 24 
                 Ill G+ G+GKt la  L+ r gf
  KOO21109.1 528 ILLEGPVGSGKTALAATLALRSGF 551
                 99**************99877644 PP

>> AAA_14  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.5   0.0    0.0006      0.23       5      76 ..     248     325 ..     245     360 .. 0.73
   2 !   10.3   0.0    0.0014      0.55       5     105 ..     528     640 ..     526     658 .. 0.74

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.0006
      AAA_14   5 lvitGaRrvGKTtllkqlikell......vkkesilyinldderdkkla.dpekllelileklkeekktylflDEiqev 76 
                 +++ G+  +GKT +++q+ k l       v+  +il  ++  e++++ +  +e+ + +++e+  +++ +++++DEi  v
  KOO21109.1 248 MLLYGPPGTGKTLIARQIGKMLNgkepkiVNGPEILS-KFVGESEANVRkLFEDAELEMKERGDDSDLHIIIFDEIDSV 325
                 6799***************998877777544444443.33333443333145556666666533367889******876 PP

  == domain 2  score: 10.3 bits;  conditional E-value: 0.0014
      AAA_14   5 lvitGaRrvGKTtllkqlikellvkkesilyinldderd.....kkladpe.kllelileklkeekktylflDEiqev...............peweka 82 
                 ++++G+  +GKT l+ +l+ +     + + +++l  ++      +  ++++  + +++ + +k+   ++++lDE+ ++               +++ ++
  KOO21109.1 528 ILLEGPVGSGKTALAATLALR-----SGFPFVKLLAPTSlvgmgE--TQKAaVIARVFDDAYKS-PLSLIVLDEVERLleyvrigprfsnvvlQTLITC 618
                 6899**************944.....5588888888777554321..22221334455554444.7889*********9******99999999999999 PP

      AAA_14  83 lkslvdegknldvivtGSnskll 105
                 +k++ +++ +l v++t S++  l
  KOO21109.1 619 IKKVPKKS-KLIVLATTSSLATL 640
                 99999988.77777777777665 PP

>> Sigma54_activat  Sigma-54 interaction domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.3   0.0    0.0021      0.83      23      49 ..     246     272 ..     233     286 .. 0.79
   2 !   10.0   0.0    0.0013      0.52       5      42 ..     507     545 ..     503     558 .. 0.83

  Alignments for each domain:
  == domain 1  score: 9.3 bits;  conditional E-value: 0.0021
                      S-EEEECSTTSSHHHHHHHHHHHSTTT CS
  Sigma54_activat  23 lsvlitGesGtGKellaraiheaskrk 49 
                        +l+ G  GtGK+l+ar+i +  + k
       KOO21109.1 246 KGMLLYGPPGTGKTLIARQIGKMLNGK 272
                      5689***************98765554 PP

  == domain 2  score: 10.0 bits;  conditional E-value: 0.0013
                      SHHHHHHHHHHHHHCTSS.S-EEEECSTTSSHHHHHHHH CS
  Sigma54_activat   5 sealkelleqikkvaktd.lsvlitGesGtGKellarai 42 
                      +++ ++l++q+++  +t+ ls+l++G  G+GK+ la ++
       KOO21109.1 507 QQSAASLISQLQQSERTPlLSILLEGPVGSGKTALAATL 545
                      56677889999999999989***************9876 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.5   0.0    0.0026         1       3      39 ..     249     288 ..     248     331 .. 0.81
   2 !   10.0   0.0    0.0018      0.71       2      38 ..     528     578 ..     528     639 .. 0.71

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 0.0026
      AAA_33   3 llvGlpGsGKstlaerllkklg...avllssdtlrrrlfg 39 
                 ll G+pG+GK+  a+++ k l      +++ ++++++ +g
  KOO21109.1 249 LLYGPPGTGKTLIARQIGKMLNgkePKIVNGPEILSKFVG 288
                 688*************988877667777777777766666 PP

  == domain 2  score: 10.0 bits;  conditional E-value: 0.0018
      AAA_33   2 vllvGlpGsGKstlaerllkklg..avllssdt............lrrrlf 38 
                 +ll G+ GsGK+ la  l+ + g  +v l  +t            ++ r+f
  KOO21109.1 528 ILLEGPVGSGKTALAATLALRSGfpFVKLLAPTslvgmgetqkaaVIARVF 578
                 6899**************999997766666666555555555555444444 PP

>> AAA_24  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.9   0.0   8.8e-05     0.034       5      23 ..     248     271 ..     245     330 .. 0.66
   2 ?    4.7   0.1     0.055        21       4      22 ..     527     545 ..     526     603 .. 0.76

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 8.8e-05
      AAA_24   5 iliyGpsgiGKTtlakel.....g 23 
                 +l+yGp+g+GKT +a+++     g
  KOO21109.1 248 MLLYGPPGTGKTLIARQIgkmlnG 271
                 79***************9555553 PP

  == domain 2  score: 4.7 bits;  conditional E-value: 0.055
      AAA_24   4 kiliyGpsgiGKTtlakel 22 
                 +il+ Gp g+GKT la++l
  KOO21109.1 527 SILLEGPVGSGKTALAATL 545
                 68999************99 PP

>> AAA_7  P-loop containing dynein motor region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.9   0.1   7.4e-05     0.029      27      60 ..     239     272 ..     233     279 .. 0.83
   2 ?   -1.7   0.1       4.4   1.7e+03      40      58 ..     335     352 ..     331     372 .. 0.72
   3 ?    4.5   0.0     0.056        22      35      52 ..     527     544 ..     510     552 .. 0.83

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 7.4e-05
       AAA_7  27 elllknkkpvllvGptGtGKtviikdllkkldke 60 
                 ++ +++ k +ll+Gp GtGKt+i++++ k l+ +
  KOO21109.1 239 KMGVRHVKGMLLYGPPGTGKTLIARQIGKMLNGK 272
                 556889999****************998888744 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 4.4
       AAA_7  40 GptGtGKtviikdllkkld 58 
                 G+tG+G tv+  ++l+k+d
  KOO21109.1 335 GSTGVGDTVVN-QMLSKID 352
                 99****99864.5666666 PP

  == domain 3  score: 4.5 bits;  conditional E-value: 0.056
       AAA_7  35 pvllvGptGtGKtviikd 52 
                 ++ll Gp+G+GKt+++ +
  KOO21109.1 527 SILLEGPVGSGKTALAAT 544
                 58999*********9987 PP

>> ATPase_2  ATPase domain predominantly from Archaea
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.8   0.1      0.06        23      24      46 ..     249     271 ..     244     278 .. 0.83
   2 ?    4.8   0.2     0.059        23      93     131 ..     285     326 ..     267     335 .. 0.82
   3 ?    3.5   0.0      0.15        59      16      39 ..     521     544 ..     512     550 .. 0.77
   4 ?    6.3   0.1      0.02       7.7     121     168 ..     588     638 ..     565     651 .. 0.77

  Alignments for each domain:
  == domain 1  score: 4.8 bits;  conditional E-value: 0.06
    ATPase_2  24 fiYGpegsGKtaLlkeiienled 46 
                 ++YGp g GKt + ++i + l+ 
  KOO21109.1 249 LLYGPPGTGKTLIARQIGKMLNG 271
                 79************999777655 PP

  == domain 2  score: 4.8 bits;  conditional E-value: 0.059
    ATPase_2  93 eilk.eksklvfkaielllekikkkgkk...iiiiiDelqkli 131
                 ++   e  ++v k +e++  ++k++g      iii+De+  + 
  KOO21109.1 285 KF-VgESEANVRKLFEDAELEMKERGDDsdlHIIIFDEIDSVC 326
                 33.259999******************99*99******98765 PP

  == domain 3  score: 3.5 bits;  conditional E-value: 0.15
    ATPase_2  16 erepneiyfiYGpegsGKtaLlke 39 
                 er+p   +++ Gp gsGKtaL   
  KOO21109.1 521 ERTPLLSILLEGPVGSGKTALAAT 544
                 55566667888*********9865 PP

  == domain 4  score: 6.3 bits;  conditional E-value: 0.02
    ATPase_2 121 iiiiDelqklid...lglngaellvkeLlnliesltkekhlcvviclsSeg 168
                  i++De+ +l +   +g + ++ +++ L+++i++ +k+ +l+v   +sS  
  KOO21109.1 588 LIVLDEVERLLEyvrIGPRFSNVVLQTLITCIKKVPKKSKLIVLATTSSLA 638
                 6889***9987622256778999******************9999999854 PP

>> IstB_IS21  IstB-like ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.1   0.0   0.00061      0.24      44      70 ..     242     268 ..     220     277 .. 0.84
   2 ?    6.8   0.0     0.013       5.2      49      69 ..     527     547 ..     500     595 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00061
   IstB_IS21  44 iekkenivllGpsGvGKshlaialgve 70 
                 +++ ++++l Gp+G+GK+ +a  +g+ 
  KOO21109.1 242 VRHVKGMLLYGPPGTGKTLIARQIGKM 268
                 6677899**************999975 PP

  == domain 2  score: 6.8 bits;  conditional E-value: 0.013
   IstB_IS21  49 nivllGpsGvGKshlaialgv 69 
                 +i+l Gp G GK+ la++l+ 
  KOO21109.1 527 SILLEGPVGSGKTALAATLAL 547
                 58899************9986 PP

>> ResIII  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.9   0.0    0.0035       1.4      23     112 ..     244     323 ..     218     355 .. 0.79
   2 !    8.6   0.0    0.0043       1.7       4      46 ..     503     547 ..     500     552 .. 0.73

  Alignments for each domain:
  == domain 1  score: 8.9 bits;  conditional E-value: 0.0035
                 TTSEEEEEESTTSTHHHHHHHHHHHH-S.....-EEEEESSHHHHHHHHHHGGGGTGG....GEEEESSS-B--.......-SEEEEEHH CS
      ResIII  23 rdkrglikmaTGtGKTlvaaklierllkkgkeekflflvprkslleqtleefkkflseaykeigkkvsgdkkkakekdstnkkilvttiq 112
                 + k +l+  + GtGKTl+a ++ + l  k+++     +v++ ++l++   e +    + +++++ +++++++++     +   i++ +i+
  KOO21109.1 244 HVKGMLLYGPPGTGKTLIARQIGKMLNGKEPK-----IVNGPEILSKFVGESEANVRKLFEDAELEMKERGDDS-----DLHIIIFDEID 323
                 4566779999****************999885.....8999999999998888888888887777777777777.....33334444555 PP

  == domain 2  score: 8.6 bits;  conditional E-value: 0.0043
                 E-HHHHHHHHHHT......TTS...EEEEEESTTSTHHHHHHHHHH CS
      ResIII   4 lreyQeeaienlleklkskrdk...rglikmaTGtGKTlvaaklie 46 
                 l++ Q++a   + +  +  +++    +l++ + G+GKT +aa l+ 
  KOO21109.1 503 LKQLQQSAASLISQLQQ-SERTpllSILLEGPVGSGKTALAATLAL 547
                 56667777665554444.3333578999*************99876 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.4   0.0      0.02       7.6       3      25 ..     248     270 ..     246     299 .. 0.87
   2 !    9.8   0.1    0.0017      0.67       3      22 ..     528     547 ..     526     550 .. 0.91
   3 ?    1.0   0.1      0.93   3.6e+02      84     136 ..     588     641 ..     560     670 .. 0.68

  Alignments for each domain:
  == domain 1  score: 6.4 bits;  conditional E-value: 0.02
                 EEEEC-TTTCHHHHHHHHHHHHC CS
       NACHT   3 vilqGeaGsGKTtLlqklalawa 25 
                 ++l G++G GKT  ++++   + 
  KOO21109.1 248 MLLYGPPGTGKTLIARQIGKMLN 270
                 6899************9976665 PP

  == domain 2  score: 9.8 bits;  conditional E-value: 0.0017
                 EEEEC-TTTCHHHHHHHHHH CS
       NACHT   3 vilqGeaGsGKTtLlqklal 22 
                 ++l+G+ GsGKT+L++ lal
  KOO21109.1 528 ILLEGPVGSGKTALAATLAL 547
                 799*************9986 PP

  == domain 3  score: 1.0 bits;  conditional E-value: 0.93
                 EEEEE-STT-SS-TCH.........HHHHHC..TTTTT--EEEEEEECCCHHHHC CS
       NACHT  84 LlilDglDelvtdlgqkekqpvrtlLselir..kkllpeasllltvrpralrdle 136
                 L++lD +++l +  +  +++ ++++L++li+  kk++++++l++ +++++l  le
  KOO21109.1 588 LIVLDEVERLLEYVRI-GPRFSNVVLQTLITciKKVPKKSKLIVLATTSSLATLE 641
                 4777777777776665.77777778888876667899999988877777774433 PP

>> NB-ARC  NB-ARC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.3   0.2    0.0031       1.2      22      42 ..     247     267 ..     235     274 .. 0.83
   2 ?    6.4   0.0     0.012       4.5       4      39 ..     509     544 ..     506     549 .. 0.86

  Alignments for each domain:
  == domain 1  score: 8.3 bits;  conditional E-value: 0.0031
                 EEEEEESTTSSHHHHHHHHCC CS
      NB-ARC  22 vvalvGmgGvGKttlakqiln 42 
                  + l+G +G GKt +a+qi +
  KOO21109.1 247 GMLLYGPPGTGKTLIARQIGK 267
                 589***************976 PP

  == domain 2  score: 6.4 bits;  conditional E-value: 0.012
                 HHHHHHHHHHCTTTSCSEEEEEEESTTSSHHHHHHH CS
      NB-ARC   4 svekviekLlekdelqslvvalvGmgGvGKttlakq 39 
                 s   +i +L +++   +l + l G  G+GKt la+ 
  KOO21109.1 509 SAASLISQLQQSERTPLLSILLEGPVGSGKTALAAT 544
                 5667899999999999999**************986 PP

>> PhoH  PhoH-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.4   0.1    0.0068       2.6      22      40 ..     248     266 ..     235     277 .. 0.81
   2 !    8.4   0.0    0.0034       1.3      13      42 ..     514     548 ..     502     550 .. 0.67

  Alignments for each domain:
  == domain 1  score: 7.4 bits;  conditional E-value: 0.0068
                 EEEE--TTSSTTHHHHHHH CS
        PhoH  22 vfaiGpaGtGKtylavala 40 
                 +   Gp GtGKt++a +++
  KOO21109.1 248 MLLYGPPGTGKTLIARQIG 266
                 5678***********8876 PP

  == domain 2  score: 8.4 bits;  conditional E-value: 0.0034
                 HHHHHH-S.....EEEEE--TTSSTTHHHHHHHHH CS
        PhoH  13 lealkknd.....ivfaiGpaGtGKtylavalave 42 
                 +++l++++      +   Gp G+GKt la +la++
  KOO21109.1 514 ISQLQQSErtpllSILLEGPVGSGKTALAATLALR 548
                 445553333444345678*************9986 PP

>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.8   0.1   0.00016     0.061      11      80 ..     245     317 ..     239     373 .. 0.77
   2 ?    2.7   0.0      0.42   1.6e+02      15      32 ..     529     546 ..     517     549 .. 0.87

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 0.00016
                 TSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGGB-HHHCCHCEEEE-SS--S-TTSBHHHH....H CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx....x RF
    ABC_tran  11 gekvaivGenGaGKStLlkllagllkpteGeilldgkdlkeqeleslrkeigvlpqepqlfpeltvren....e 80 
                  + + + G+ G+GK+ +++ + ++l+ +e +i ++g ++ ++   +++++++ l+++++l  + +  ++     
  KOO21109.1 245 VKGMLLYGPPGTGKTLIARQIGKMLNGKEPKI-VNGPEILSKFVGESEANVRKLFEDAELEMKERGDDSdlhiI 317
                 5667899*************************.************************99887765444455551 PP

  == domain 2  score: 2.7 bits;  conditional E-value: 0.42
                 EEEESTTSSHHHHHHHHT CS
                 xxxxxxxxxxxxxxxxxx RF
    ABC_tran  15 aivGenGaGKStLlklla 32 
                  + G+ G+GK+ L+++la
  KOO21109.1 529 LLEGPVGSGKTALAATLA 546
                 5679*********99986 PP

>> RNA_helicase  RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.4   0.0   0.00041      0.16       2      25 ..     249     272 ..     248     292 .. 0.83
   2 ?    4.1   0.0      0.15        60       1      19 [.     528     546 ..     528     583 .. 0.89

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 0.00041
  RNA_helicase   2 wlyGpsgeGKStlakeLakallkk 25 
                   +lyGp+g+GK+++a+++ k l +k
    KOO21109.1 249 LLYGPPGTGKTLIARQIGKMLNGK 272
                   79**************98888754 PP

  == domain 2  score: 4.1 bits;  conditional E-value: 0.15
  RNA_helicase   1 iwlyGpsgeGKStlakeLa 19 
                   i+l Gp g GK+ la +La
    KOO21109.1 528 ILLEGPVGSGKTALAATLA 546
                   6789***********9987 PP

>> ATPase  KaiC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.8   0.1   7.3e-05     0.028       4      38 ..     211     264 ..     208     271 .. 0.89
   2 ?   -0.8   0.0       2.1   8.1e+02     112     147 ..     438     473 ..     414     523 .. 0.71
   3 ?    1.6   0.0      0.39   1.5e+02      21      41 ..     527     547 ..     525     551 .. 0.86

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 7.3e-05
      ATPase   4 gIeglDeilk...................gGipegrvvlitGepGtGKtifalq 38 
                 gI glD+ ++                    G+ + + +l++G pGtGKt++a q
  KOO21109.1 211 GIGGLDKEFSdifrrafasrifpaavvkkMGVRHVKGMLLYGPPGTGKTLIARQ 264
                 888999888668889999999999999999*********************987 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 2.1
      ATPase 112 aeaikeika.krvviDsitglayeekeavaReilrql 147
                  +a +++   ++v +D+i+++ + e+ +v+R+ + + 
  KOO21109.1 438 VKAAASYAFsRQVQVDNIKSV-NVEELQVTRADFERA 473
                 444444444366778888888.777777777766654 PP

  == domain 3  score: 1.6 bits;  conditional E-value: 0.39
      ATPase  21 vvlitGepGtGKtifalqFli 41 
                 ++l+ G  G+GKt +a++ ++
  KOO21109.1 527 SILLEGPVGSGKTALAATLAL 547
                 5899***********987665 PP

>> DEAD  DEAD/DEAH box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.3   0.1         2   7.7e+02      16      31 ..     247     262 ..     234     265 .. 0.84
   2 ?    1.4   0.0      0.59   2.3e+02     119     136 ..     311     328 ..     263     336 .. 0.78
   3 ?    5.5   0.1     0.034        13      16      36 ..     527     547 ..     505     575 .. 0.81
   4 !    8.0   0.0    0.0055       2.2     120     170 ..     584     636 ..     557     643 .. 0.75

  Alignments for each domain:
  == domain 1  score: -0.3 bits;  conditional E-value: 2
                 EEEEEESTTSSHHHHH CS
                 xxxxxxxxxxxxxxxx RF
        DEAD  16 dvlvaaeTGsGKTlaf 31 
                  +l+ ++ G+GKTl++
  KOO21109.1 247 GMLLYGPPGTGKTLIA 262
                 5889999******986 PP

  == domain 2  score: 1.4 bits;  conditional E-value: 0.59
                 CTTEEEEEEETHHHHHHT CS
                 xxxxxxxxxxxxxxxxxx RF
        DEAD 119 lsqvrflVlDEadrlldq 136
                  s++ ++++DE+d + +q
  KOO21109.1 311 DSDLHIIIFDEIDSVCKQ 328
                 578999*******99887 PP

  == domain 3  score: 5.5 bits;  conditional E-value: 0.034
                 EEEEEESTTSSHHHHHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxx RF
        DEAD  16 dvlvaaeTGsGKTlaflipvl 36 
                 ++l+++++GsGKT+ ++  +l
  KOO21109.1 527 SILLEGPVGSGKTALAATLAL 547
                 5899*********99877666 PP

  == domain 4  score: 8.0 bits;  conditional E-value: 0.0055
                 TTEEEEEEETHHHHHHT.TTHHHHHHHHHHSHHHCTTST..TTSEEEEEESSBS CS
                 xxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxx RF
        DEAD 120 sqvrflVlDEadrlldq.gfsdfinrilnqlpqitcdgk..lqrqvivlSATlp 170
                 s ++++VlDE+ rll+    ++  ++++ q+  itc +k  +++++ivl  T +
  KOO21109.1 584 SPLSLIVLDEVERLLEYvRIGPRFSNVVLQT-LITCIKKvpKKSKLIVLATTSS 636
                 56899***********987777777766666.4787777624444676666654 PP

>> AAA_28  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.6   0.0     0.011       4.3       4      38 ..     250     290 ..     248     310 .. 0.74
   2 ?    7.6   0.1     0.011       4.3       2      27 ..     528     554 ..     527     573 .. 0.88

  Alignments for each domain:
  == domain 1  score: 7.6 bits;  conditional E-value: 0.011
      AAA_28   4 itGgestGKTtlleaLaar....gypvv..pEaareileek 38 
                 + G+++tGKT +++++ ++    + ++v  pE+  +++ e 
  KOO21109.1 250 LYGPPGTGKTLIARQIGKMlngkEPKIVngPEILSKFVGES 290
                 89************999776655555666788777777555 PP

  == domain 2  score: 7.6 bits;  conditional E-value: 0.011
      AAA_28   2 ivitGgestGKTtlleaLaar.gypvv 27 
                 i + G+ ++GKT l++ La r g+p v
  KOO21109.1 528 ILLEGPVGSGKTALAATLALRsGFPFV 554
                 7899***************76699987 PP

>> AAA_3  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.4   0.0   0.00057      0.22       2      44 ..     248     289 ..     247     331 .. 0.70
   2 ?    2.4   0.0      0.33   1.3e+02       2      28 ..     528     554 ..     527     638 .. 0.79

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00057
       AAA_3   2 vllegvPGlaktllvkalakaldlefkriqftpdllPsdilGt 44 
                 +ll g PG++ktl++++++k+l+ +  +i   p++l    +G 
  KOO21109.1 248 MLLYGPPGTGKTLIARQIGKMLNGKEPKIVNGPEILSK-FVGE 289
                 6899*************************999999854.4443 PP

  == domain 2  score: 2.4 bits;  conditional E-value: 0.33
       AAA_3   2 vllegvPGlaktllvkalakaldlefk 28 
                 +lleg  G +kt l+ +la   +  f 
  KOO21109.1 528 ILLEGPVGSGKTALAATLALRSGFPFV 554
                 7999999*****999999976655554 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.9   0.1    0.0029       1.1      21      46 ..     248     273 ..     234     283 .. 0.79
   2 ?    5.1   0.0     0.043        17      21      57 ..     528     562 ..     504     598 .. 0.62

  Alignments for each domain:
  == domain 1  score: 8.9 bits;  conditional E-value: 0.0029
      AAA_30  21 avltGpAGtGKttalkalreaweaag 46 
                 ++l Gp+GtGKt + +++ ++++ ++
  KOO21109.1 248 MLLYGPPGTGKTLIARQIGKMLNGKE 273
                 6899************9988887665 PP

  == domain 2  score: 5.1 bits;  conditional E-value: 0.043
      AAA_30  21 avltGpAGtGKttalkalreaweaaggrviglAptgk 57 
                  +l+Gp G+GKt + ++l+  +++    v +lApt+ 
  KOO21109.1 528 ILLEGPVGSGKTALAATLA--LRSGFPFVKLLAPTSL 562
                 5799********8865543..3333344557777764 PP

>> CDC48_2  Cell division protein 48 (CDC48), domain 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.3   0.0   0.00029      0.11       2      49 ..     109     157 ..     108     161 .. 0.94
   2 ?    0.8   0.1       1.1   4.2e+02       2      19 ..     215     232 ..     214     234 .. 0.85

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 0.00029
                 .SCCCCH.HHHCCCTTEEE-TTEEEEECCTCCCEEEEEEEECCCCSCEE CS
     CDC48_2   2 idgdema.ylkrqFlgrpvtkGdlvvfefkgqeiklvVvstePkgpvgi 49 
                 idg e++  + +++  + vt G++++ e  g ++ l++ + e++g+v+ 
  KOO21109.1 109 IDGKELSrLILQRYSRQYVTTGQQLATECQGVNLLLTIGGLEAVGDVKG 157
                 89999**99************************************9985 PP

  == domain 2  score: 0.8 bits;  conditional E-value: 1.1
                 .SCCCCHHHHCCCTTEEE CS
     CDC48_2   2 idgdemaylkrqFlgrpv 19 
                 +d ++ + ++r+F +r++
  KOO21109.1 215 LDKEFSDIFRRAFASRIF 232
                 5777777*********98 PP

>> Rad17  Rad17 P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.1   0.1     0.025       9.8      47      82 ..     247     282 ..     234     328 .. 0.83
   2 ?    0.1   0.0       1.6   6.4e+02      52      77 ..     335     360 ..     333     376 .. 0.80
   3 ?    5.2   0.0     0.047        18      40      82 ..     517     562 ..     499     583 .. 0.70
   4 ?   -2.2   0.0       8.6   3.4e+03     127     161 ..     580     616 ..     567     634 .. 0.70

  Alignments for each domain:
  == domain 1  score: 6.1 bits;  conditional E-value: 0.025
       Rad17  47 iLLisGPsGCgkstvvkvLskelgiklrewlnpvsl 82 
                  +L+ GP+G gk+ + + + k l  k  + +n+ ++
  KOO21109.1 247 GMLLYGPPGTGKTLIARQIGKMLNGKEPKIVNGPEI 282
                 57999*****************99998888887654 PP

  == domain 2  score: 0.1 bits;  conditional E-value: 1.6
       Rad17  52 GPsGCgkstvvkvLskelgiklrewl 77 
                 G +G g + v ++Lsk+ g++  +++
  KOO21109.1 335 GSTGVGDTVVNQMLSKIDGVNALNNI 360
                 8899**************99877665 PP

  == domain 3  score: 5.2 bits;  conditional E-value: 0.047
       Rad17  40 Lesrkkr....iLLisGPsGCgkstvvkvLskelgiklrewlnpvsl 82 
                 L++ + r     +L+ GP G gk+     L+   g+ + + l p+sl
  KOO21109.1 517 LQQSE-RtpllSILLEGPVGSGKTALAATLALRSGFPFVKLLAPTSL 562
                 22222.1454446899**************99999999999988886 PP

  == domain 4  score: -2.2 bits;  conditional E-value: 8.6
       Rad17 127 ddlrtdkklilvedlP..nkfyrdsdalrevirkylr 161
                 d  ++ ++li+++++    ++ r   ++ +v+++ l 
  KOO21109.1 580 DAYKSPLSLIVLDEVErlLEYVRIGPRFSNVVLQTLI 616
                 3346778999999998444555555888888888764 PP

>> AAA_11  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.7   0.0   0.00085      0.33      19      58 ..     247     283 ..     234     314 .. 0.72
   2 ?    2.9   0.0       0.2        79      11      37 ..     515     545 ..     503     570 .. 0.73

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00085
      AAA_11  19 itliqGPPGtgKTktivellsqllsrrkseeeksakpriL 58 
                   l+ GPPGtgKT    ++ ++l+    +e +  ++p+iL
  KOO21109.1 247 GMLLYGPPGTGKTLIARQIGKMLNG---KEPKIVNGPEIL 283
                 4799*********998888888842...344444455544 PP

  == domain 2  score: 2.9 bits;  conditional E-value: 0.2
      AAA_11  11 ksalsese....itliqGPPGtgKTktivel 37 
                 ++  +++       l++GP G+gKT   + l
  KOO21109.1 515 SQLQQSERtpllSILLEGPVGSGKTALAATL 545
                 3333333367776799*********766555 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.5   0.0    0.0069       2.7      37      52 ..     249     264 ..     236     277 .. 0.88
   2 ?    4.9   0.3     0.045        17      36      55 ..     528     547 ..     526     560 .. 0.92
   3 ?    0.7   0.0      0.87   3.4e+02     125     156 ..     569     599 ..     548     633 .. 0.76

  Alignments for each domain:
  == domain 1  score: 7.5 bits;  conditional E-value: 0.0069
      AAA_25  37 llaGapgtGKttlald 52 
                 ll+G+pgtGKt +a +
  KOO21109.1 249 LLYGPPGTGKTLIARQ 264
                 89**********9976 PP

  == domain 2  score: 4.9 bits;  conditional E-value: 0.045
      AAA_25  36 allaGapgtGKttlaldlal 55 
                 +ll G+ g+GKt+la  lal
  KOO21109.1 528 ILLEGPVGSGKTALAATLAL 547
                 6899*************998 PP

  == domain 3  score: 0.7 bits;  conditional E-value: 0.87
      AAA_25 125 lltadvdaleaaieevegvrlvviDplsralg 156
                 + +a+++++ +++ +   + l+v+D + r+l+
  KOO21109.1 569 QKAAVIARVFDDAYK-SPLSLIVLDEVERLLE 599
                 345778888888888.56********999875 PP

>> T2SSE  Type II/IV secretion system protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.1   0.0     0.054        21     126     161 ..     242     277 ..     221     278 .. 0.86
   2 ?    7.1   0.0    0.0065       2.5     124     148 ..     523     544 ..     448     548 .. 0.75

  Alignments for each domain:
  == domain 1  score: 4.1 bits;  conditional E-value: 0.054
       T2SSE 126 vrerglilvsGgTgsGKttllyallkeinksderiv 161
                 vr+ + +l+ G+ g+GKt ++  + k++n ++ +iv
  KOO21109.1 242 VRHVKGMLLYGPPGTGKTLIARQIGKMLNGKEPKIV 277
                 566677999************999999998887776 PP

  == domain 2  score: 7.1 bits;  conditional E-value: 0.0065
       T2SSE 124 kavrerglilvsGgTgsGKttllya 148
                 ++     +il+ G+ gsGKt l+ +
  KOO21109.1 523 TP---LLSILLEGPVGSGKTALAAT 544
                 22...468************98765 PP

>> Parvo_NS1  Parvovirus non-structural protein NS1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.9   0.0    0.0018      0.69     117     137 ..     248     268 ..     226     271 .. 0.78
   2 ?    2.2   0.0       0.2        76     116     135 ..     527     546 ..     507     561 .. 0.72

  Alignments for each domain:
  == domain 1  score: 8.9 bits;  conditional E-value: 0.0018
   Parvo_NS1 117 vwfyGpantGktnlaeaIaka 137
                  ++yGp+ tGkt +a++I k 
  KOO21109.1 248 MLLYGPPGTGKTLIARQIGKM 268
                 5799*************9775 PP

  == domain 2  score: 2.2 bits;  conditional E-value: 0.2
   Parvo_NS1 116 tvwfyGpantGktnlaeaIa 135
                  +++ Gp+  Gkt la+++a
  KOO21109.1 527 SILLEGPVGSGKTALAATLA 546
                 57888************776 PP

>> AAA_17  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.0       9.8   3.8e+03      13      39 ..     116     142 ..     111     156 .. 0.80
   2 ?    5.6   0.0     0.052        20       1      25 [.     251     278 ..     251     330 .. 0.68
   3 ?    5.6   0.0     0.051        20       2      24 ..     532     554 ..     531     557 .. 0.93

  Alignments for each domain:
  == domain 1  score: -1.8 bits;  conditional E-value: 9.8
                 HHHHHHHTEEEEEHHHHHHHHHHTTTS CS
      AAA_17  13 eklvekygfthlsaGdllreeakrggl 39 
                 + + ++y  +++++G+ l  e++  +l
  KOO21109.1 116 RLILQRYSRQYVTTGQQLATECQGVNL 142
                 557899999*********999987766 PP

  == domain 2  score: 5.6 bits;  conditional E-value: 0.052
                 EE-TTSSHHHHHHHHHHHH...TEEEEE CS
      AAA_17   1 lGgPGsGKgtqceklveky...gfthls 25 
                 +G+PG GK+ +++++ + +   + ++++
  KOO21109.1 251 YGPPGTGKTLIARQIGKMLngkEPKIVN 278
                 7***********9998877443344444 PP

  == domain 3  score: 5.6 bits;  conditional E-value: 0.051
                 E-TTSSHHHHHHHHHHHHTEEEE CS
      AAA_17   2 GgPGsGKgtqceklvekygfthl 24 
                 G+ GsGK+ ++++l+ + gf+++
  KOO21109.1 532 GPVGSGKTALAATLALRSGFPFV 554
                 899*****************997 PP

>> AFG1_ATPase  AFG1-like ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.3   0.0     0.039        15      50      79 ..     234     262 ..     191     279 .. 0.71
   2 ?    6.3   0.0    0.0095       3.7      55      81 ..     518     544 ..     462     548 .. 0.76

  Alignments for each domain:
  == domain 1  score: 4.3 bits;  conditional E-value: 0.039
  AFG1_ATPase  50 klfgrkrksvepvrglYlwGgvGrGKtylm 79 
                    + +k   v+ v+g+ l+G+ G GKt + 
   KOO21109.1 234 AAVVKK-MGVRHVKGMLLYGPPGTGKTLIA 262
                  344444.356679**************875 PP

  == domain 2  score: 6.3 bits;  conditional E-value: 0.0095
  AFG1_ATPase  55 krksvepvrglYlwGgvGrGKtylmdl 81 
                  ++ + +p  ++ l G+vG GKt l ++
   KOO21109.1 518 QQSERTPLLSILLEGPVGSGKTALAAT 544
                  335678999*************99765 PP

>> AAA_19  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   0.2    0.0021      0.81      11      35 ..     246     270 ..     238     283 .. 0.84
   2 ?   -0.5   0.0       3.7   1.4e+03      19      53 ..     332     368 ..     316     478 .. 0.67
   3 ?    0.1   0.0       2.3   9.1e+02      13      27 ..     528     542 ..     516     572 .. 0.83

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.0021
      AAA_19  11 kvllvtaGpGtGKTrvlkhivallv 35 
                 k +l+ ++pGtGKT + ++i ++l+
  KOO21109.1 246 KGMLLYGPPGTGKTLIARQIGKMLN 270
                 5699***********9999887765 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 3.7
      AAA_19  19 pGtGKTrvlkhiva.llvelggvkp.eeillvaftgr 53 
                  G G T v  ++v+ +l ++ gv++ ++ill+ +t+r
  KOO21109.1 332 GGAGSTGVGDTVVNqMLSKIDGVNAlNNILLIGMTNR 368
                 5556666655555413445555554488999999988 PP

  == domain 3  score: 0.1 bits;  conditional E-value: 2.3
      AAA_19  13 llvtaGpGtGKTrvl 27 
                 +l+ ++ G+GKT + 
  KOO21109.1 528 ILLEGPVGSGKTALA 542
                 5777888*****864 PP

>> IPT  Isopentenyl transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.9   0.0      0.65   2.5e+02       4      23 ..     248     267 ..     245     270 .. 0.86
   2 ?   -0.7   0.0         2   7.7e+02     171     199 ..     433     462 ..     416     467 .. 0.79
   3 ?    7.7   0.0    0.0052         2       5      32 ..     529     556 ..     527     557 .. 0.91

  Alignments for each domain:
  == domain 1  score: 0.9 bits;  conditional E-value: 0.65
         IPT   4 ylifGatttGKtaeaiklak 23 
                  l++G+ +tGKt  a ++ k
  KOO21109.1 248 MLLYGPPGTGKTLIARQIGK 267
                 589*********99988866 PP

  == domain 2  score: -0.7 bits;  conditional E-value: 2
         IPT 171 didGy.ryildyarkkkvtidklanldadq 199
                 +i+G+ + + +ya  ++v++d++++++ + 
  KOO21109.1 433 EIEGLvKAAASYAFSRQVQVDNIKSVNVEE 462
                 67776356789**************99865 PP

  == domain 3  score: 7.7 bits;  conditional E-value: 0.0052
         IPT   5 lifGatttGKtaeaiklaketgapvivl 32 
                 l+ G+ ++GKta a  la + g+p + l
  KOO21109.1 529 LLEGPVGSGKTALAATLALRSGFPFVKL 556
                 677*********************9865 PP

>> TniB  Bacterial TniB protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.9   0.0     0.019       7.4      33      56 ..     243     266 ..     234     283 .. 0.82
   2 ?   -0.3   0.0       1.6   6.1e+02     114     133 ..     308     327 ..     280     331 .. 0.72
   3 ?    2.4   0.0      0.23        91      15      53 ..     505     543 ..     499     549 .. 0.80
   4 ?   -2.2   0.0       5.9   2.3e+03     120     133 ..     586     599 ..     567     611 .. 0.82

  Alignments for each domain:
  == domain 1  score: 5.9 bits;  conditional E-value: 0.019
        TniB  33 krmpnlllvGdsnnGKtmivekFa 56 
                   ++ +ll+G++ +GKt i+++  
  KOO21109.1 243 RHVKGMLLYGPPGTGKTLIARQIG 266
                 56789**************99865 PP

  == domain 2  score: -0.3 bits;  conditional E-value: 1.6
        TniB 114 llrelkvrvLiiDEihnlla 133
                   ++ +++++i+DEi+++ +
  KOO21109.1 308 RGDDSDLHIIIFDEIDSVCK 327
                 55667899*******99865 PP

  == domain 3  score: 2.4 bits;  conditional E-value: 0.23
        TniB  15 rakeilerLeeLleypkrkrmpnlllvGdsnnGKtmive 53 
                 + ++  ++L + l+  +r+   ++ll G+   GKt+++ 
  KOO21109.1 505 QLQQSAASLISQLQQSERTPLLSILLEGPVGSGKTALAA 543
                 556666777777777888888899***********9875 PP

  == domain 4  score: -2.2 bits;  conditional E-value: 5.9
        TniB 120 vrvLiiDEihnlla 133
                 + ++++DE+++ll+
  KOO21109.1 586 LSLIVLDEVERLLE 599
                 67899****99985 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.2   0.0     0.092        36      21      36 ..     245     259 ..     238     265 .. 0.83
   2 ?    5.5   0.0     0.035        14      24      38 ..     527     541 ..     515     548 .. 0.80

  Alignments for each domain:
  == domain 1  score: 4.2 bits;  conditional E-value: 0.092
      AAA_29  21 lkgatlltGpsGsGKS 36 
                 +kg +ll Gp G+GK+
  KOO21109.1 245 VKG-MLLYGPPGTGKT 259
                 467.9**********6 PP

  == domain 2  score: 5.5 bits;  conditional E-value: 0.035
      AAA_29  24 atlltGpsGsGKSTl 38 
                 ++ll Gp GsGK++l
  KOO21109.1 527 SILLEGPVGSGKTAL 541
                 479*********988 PP

>> Cytidylate_kin  Cytidylate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.9   0.0       0.2        77       5      23 ..     252     270 ..     249     273 .. 0.90
   2 ?    7.0   0.0     0.011       4.3       1      27 [.     528     554 ..     528     557 .. 0.89

  Alignments for each domain:
  == domain 1  score: 2.9 bits;  conditional E-value: 0.2
                     -STTSSHHHHHHHHHHHHT CS
  Cytidylate_kin   5 GPagsGKssvaralaeklg 23 
                     GP g+GK  +ar++++ l+
      KOO21109.1 252 GPPGTGKTLIARQIGKMLN 270
                     9**************9987 PP

  == domain 2  score: 7.0 bits;  conditional E-value: 0.011
                     EEEE-STTSSHHHHHHHHHHHHT-EEE CS
  Cytidylate_kin   1 iaiDGPagsGKssvaralaeklglkyl 27 
                     i + GP gsGK ++a +la + g+ ++
      KOO21109.1 528 ILLEGPVGSGKTALAATLALRSGFPFV 554
                     5689***************99998876 PP

>> dNK  Deoxynucleoside kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.0       9.5   3.7e+03       5      28 ..     335     358 ..     334     362 .. 0.86
   2 ?   10.8   0.0   0.00084      0.33       1      27 [.     528     554 ..     528     583 .. 0.91

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 9.5
                 ESTTSSHHHHHHHHHCCSTCEEEE CS
         dNK   5 GnIgaGKstlvklLskklgvkvfe 28 
                 G  g+G + + ++Lsk  gv++++
  KOO21109.1 335 GSTGVGDTVVNQMLSKIDGVNALN 358
                 8889************99998876 PP

  == domain 2  score: 10.8 bits;  conditional E-value: 0.00084
                 EEEEESTTSSHHHHHHHHHCCSTCEEE CS
         dNK   1 ivveGnIgaGKstlvklLskklgvkvf 27 
                 i +eG++g+GK+ l+ +L+ + g++++
  KOO21109.1 528 ILLEGPVGSGKTALAATLALRSGFPFV 554
                 679****************99998876 PP

>> DUF2075  Uncharacterized conserved protein (DUF2075)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.5   0.1    0.0055       2.1       5      25 ..     249     269 ..     246     329 .. 0.77
   2 ?    1.5   0.1      0.35   1.4e+02       4      24 ..     528     548 ..     527     577 .. 0.86

  Alignments for each domain:
  == domain 1  score: 7.5 bits;  conditional E-value: 0.0055
     DUF2075   5 lVtGvaGtGKtvvllnllael 25 
                 l  G +GtGKt+++ ++   l
  KOO21109.1 249 LLYGPPGTGKTLIARQIGKML 269
                 6789**********9997776 PP

  == domain 2  score: 1.5 bits;  conditional E-value: 0.35
     DUF2075   4 vlVtGvaGtGKtvvllnllae 24 
                 +l +G  G+GKt ++ +l+ +
  KOO21109.1 528 ILLEGPVGSGKTALAATLALR 548
                 578999*********999876 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.1       4.2   1.6e+03       3      15 ..     249     261 ..     248     289 .. 0.83
   2 ?    0.9   0.1      0.85   3.3e+02       6      20 ..     532     546 ..     528     557 .. 0.83
   3 ?    7.1   0.0     0.011       4.3     236     292 ..     562     628 ..     551     640 .. 0.72

  Alignments for each domain:
  == domain 1  score: -1.4 bits;  conditional E-value: 4.2
      AAA_21   3 vliGpNgsGKSnL 15 
                 +l+Gp g+GK+ +
  KOO21109.1 249 LLYGPPGTGKTLI 261
                 79*********76 PP

  == domain 2  score: 0.9 bits;  conditional E-value: 0.85
      AAA_21   6 GpNgsGKSnLLdald 20 
                 Gp gsGK+ L  +l 
  KOO21109.1 532 GPVGSGKTALAATLA 546
                 9********988875 PP

  == domain 3  score: 7.1 bits;  conditional E-value: 0.011
      AAA_21 236 elSdGtkrllalltallralkkg..sllliDEpEngLHP.........kllrrllellkelsrngaQv 292
                  +++G  + +a+++ +++++ k+  sl+++DE+E  L++          +l +l++ +k+  + ++++
  KOO21109.1 562 LVGMGETQKAAVIARVFDDAYKSplSLIVLDEVERLLEYvrigprfsnVVLQTLITCIKKVPK-KSKL 628
                 4589999999*************************9999544444443333555555544444.4444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (724 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       545  (0.0303977); expected 358.6 (0.02)
Passed bias filter:                      496  (0.0276647); expected 358.6 (0.02)
Passed Vit filter:                       102  (0.00568911); expected 17.9 (0.001)
Passed Fwd filter:                        46  (0.00256568); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              46  [number of targets reported over threshold]
# CPU time: 0.80u 0.28s 00:00:01.08 Elapsed: 00:00:00.43
# Mc/sec: 5023.62
//
Query:       KOO21110.1  [L=297]
Description: conserved unknown protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
     0.0019   18.4   0.9      0.005   17.0   0.0    2.1  2  HIG_1_N   Hypoxia induced protein conserved region
  ------ inclusion threshold ------
       0.26   11.2   3.2       0.27   11.1   0.3    2.3  3  ENOD93    Early nodulin 93 ENOD93 protein
        4.4    7.5   5.9         31    4.7   0.0    2.9  3  CwsA      Cell wall synthesis protein CwsA


Domain annotation for each model (and alignments):
>> HIG_1_N  Hypoxia induced protein conserved region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.3      0.72   4.3e+03      13      15 ..      27      29 ..      19      48 .. 0.56
   2 !   17.0   0.0   8.3e-07     0.005      29      50 ..     138     167 ..     127     168 .. 0.73

  Alignments for each domain:
  == domain 1  score: -2.0 bits;  conditional E-value: 0.72
     HIG_1_N 13 vga 15
                +++
  KOO21110.1 27 TVV 29
                222 PP

  == domain 2  score: 17.0 bits;  conditional E-value: 8.3e-07
     HIG_1_N  29 k........qsnrlmraRiaaQaftvlalv 50 
                 +         s+rl+++R++ Q ++vl  v
  KOO21110.1 138 ThpstahmpLSQRLIHTRVYGQMVAVLSTV 167
                 3344456669****************9766 PP

>> ENOD93  Early nodulin 93 ENOD93 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.3   4.6e-05      0.27      14      71 ..      17      74 ..      13      79 .. 0.91
   2 ?   -0.5   0.0       0.2   1.2e+03      52      62 ..     162     172 ..     155     177 .. 0.76
   3 ?   -3.4   0.0       1.6   9.4e+03      57      71 ..     278     292 ..     273     294 .. 0.81

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 4.6e-05
      ENOD93 14 iagaKaAavaavvsavpTlaavrmlpWakanlNytaqaliisaaaiaayFitadKtil 71
                i+g+ aA+v++vv+  +  aa  ++p  ++     ++  +i + +  a+F+ +++ti 
  KOO21110.1 17 INGTVAAVVTTVVTGGAVAAANAFSPRFRSMFGVSGKLALIVTPSLGAFFLRSQQTIN 74
                5789999999999999999999***************999999*********999995 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 0.2
      ENOD93  52 liisaaaiaay 62 
                  ++s++a++++
  KOO21110.1 162 AVLSTVAVMGF 172
                 57899999988 PP

  == domain 3  score: -3.4 bits;  conditional E-value: 1.6
      ENOD93  57 aaiaayFitadKtil 71 
                  + a+y + +d t+l
  KOO21110.1 278 LSHAGYIMFSDSTVL 292
                 577899999999998 PP

>> CwsA  Cell wall synthesis protein CwsA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.3   1.5     0.014        86      93     108 ..      21      36 ..      17      43 .. 0.88
   2 ?    4.7   0.0    0.0052        31      46      74 ..      70      98 ..      62     118 .. 0.86
   3 ?   -1.1   0.0      0.33     2e+03      88      98 ..     199     209 ..     140     232 .. 0.67

  Alignments for each domain:
  == domain 1  score: 3.3 bits;  conditional E-value: 0.014
        CwsA  93 lagvavavlaGGavaf 108
                 +a+v ++v++GGava 
  KOO21110.1  21 VAAVVTTVVTGGAVAA 36 
                 799***********96 PP

  == domain 2  score: 4.7 bits;  conditional E-value: 0.0052
        CwsA 46 esrlarelaaaqeaiaqelaaaqevvagl 74
                ++ +++ l +a+  ia +laaa+ v a +
  KOO21110.1 70 QQTINQALHDADGFIAPQLAAAETVAAPI 98
                567889999*************9998765 PP

  == domain 3  score: -1.1 bits;  conditional E-value: 0.33
        CwsA  88 krplllagvav 98 
                 +rp+   g++ 
  KOO21110.1 199 RRPFYEIGIGS 209
                 44443333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (297 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       453  (0.0252663); expected 358.6 (0.02)
Passed bias filter:                      333  (0.0185733); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.41u 0.26s 00:00:00.67 Elapsed: 00:00:00.41
# Mc/sec: 2186.36
//
Query:       KOO21111.1  [L=179]
Description: hypothetical protein Ctob_001973 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.18   11.3   0.0        2.1    7.8   0.0    2.0  2  Gemin6    Gemin6 protein


Domain annotation for each model (and alignments):
>> Gemin6  Gemin6 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.4   0.0    0.0054        97      19      71 ..      74     126 ..      66     128 .. 0.87
   2 ?    7.8   0.0   0.00012       2.1     112     154 ..     125     170 ..     119     177 .. 0.83

  Alignments for each domain:
  == domain 1  score: 2.4 bits;  conditional E-value: 0.0054
      Gemin6  19 evkvllsekeikGwlltvdpvsksvvlvnfledGalsvsvvlGhavktveiis 71 
                 +v ++  ++ ++G l   d   ++vv +  +e  +   s++lG    + ei++
  KOO21111.1  74 NVSLINGKRYVDGKLADKDANGRKVVQTAEIETSRRGISGMLGGGKLNAEIQK 126
                 57788888999999999*************************98877777765 PP

  == domain 2  score: 7.8 bits;  conditional E-value: 0.00012
      Gemin6 112 nrlsvteegdadrllcvlGvl...tieppyaqescrssneiilsri 154
                  + +v e g    ++ vlG l   +++p y +es + s    +++i
  KOO21111.1 125 QKNPVVEAGSLAATVIVLGALvfgAVNPAYIEESAQKSQATCVEKI 170
                 55689999***********99444589*********9998877776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (179 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       364  (0.0203023); expected 358.6 (0.02)
Passed bias filter:                      302  (0.0168442); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.27s 00:00:00.67 Elapsed: 00:00:00.43
# Mc/sec: 1264.50
//
Query:       KOO21112.1  [L=106]
Description: hypothetical protein Ctob_001972 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (106 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       339  (0.0189079); expected 358.6 (0.02)
Passed bias filter:                      177  (0.00987227); expected 358.6 (0.02)
Passed Vit filter:                        10  (0.000557756); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.25s 00:00:00.61 Elapsed: 00:00:00.40
# Mc/sec: 801.93
//
Query:       KOO21113.1  [L=314]
Description: hypothetical protein Ctob_001966 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (314 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1383  (0.0771376); expected 358.6 (0.02)
Passed bias filter:                      543  (0.0302861); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.49u 0.27s 00:00:00.76 Elapsed: 00:00:00.43
# Mc/sec: 2215.60
//
Query:       KOO21114.1  [L=245]
Description: hypothetical protein Ctob_001967 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (245 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       803  (0.0447878); expected 358.6 (0.02)
Passed bias filter:                      393  (0.0219198); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.43u 0.26s 00:00:00.69 Elapsed: 00:00:00.41
# Mc/sec: 1801.45
//
Query:       KOO21115.1  [L=1271]
Description: hypothetical protein Ctob_001965, partial [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1271 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1165  (0.0649785); expected 358.6 (0.02)
Passed bias filter:                      451  (0.0251548); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.84u 0.29s 00:00:01.12 Elapsed: 00:00:00.44
# Mc/sec: 8634.77
//
Query:       KOO21116.1  [L=415]
Description: neutral amino acid transport protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.8e-35  122.0  18.9    3.8e-35  121.5  18.9    1.2  1  AA_permease_2  Amino acid permease
    8.1e-25   87.3  13.7    1.6e-23   83.1  13.7    2.0  1  AA_permease    Amino acid permease


Domain annotation for each model (and alignments):
>> AA_permease_2  Amino acid permease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  121.5  18.9   4.3e-39   3.8e-35      18     405 ..       5     399 ..       1     411 [. 0.81

  Alignments for each domain:
  == domain 1  score: 121.5 bits;  conditional E-value: 4.3e-39
  AA_permease_2  18 gifvkn........laasggpa.lilwvwiavligslavllvyaElssalprsgGiyvytkaafgkkvaflsawfnwfayvpvlasilsvaasyll 104
                    ++f++         +++++gp  +++ +++  + +sl+ +l  aEls+++p  gG +v++++a g+++a+ +a +n++a ++ +a++ ++++ yl 
     KOO21116.1   5 TFFAVCggnygmedAVGAAGPRlTMIGLLLLPMFWSLPIGLMTAELSAMIPEAGGYVVWVHRALGPFWAHQNALWNLVANAFDNALYPVMFVDYLK 100
                    444433444555566777888536777778889999***********************************************************5 PP

  AA_permease_2 105 na.lgpdlqgntwltyliaiaililvalinirgikesakiqnilgilkillpliiliilglitvdgggfsslstetdtffpngwpgvllglliv.l 198
                    ++ l+  l  n   + l+ ++ li v+ +n++g+  +a   +  ++l+i  p++ l i+g  ++d +           f p   p+ ++++l v l
     KOO21116.1 101 FFqLFRRL--NGLRSWLVSVGMLICVTGLNLLGVDVVASSSTLFAVLVI-SPFAALTIAGAPALDMHAL---------FAPCERPIEWGTFLSVlL 184
                    54366677..567799999********************9999999999.8*99999999999966544.........345566666777666439 PP

  AA_permease_2 199 wsfdGfesaanvseevkk..kdvpkaifigllivlvlyllvniaflgvvpddeianlsnlgsvaalffeavggkvvaiivvilialsllgaintav 292
                    w ++G++sa   + ev+   +d+pka+++ +++v+++yll  +a+++ +  ++++   + + +a++  + vg  ++++ +++++a+s++g +nt++
     KOO21116.1 185 WNTSGYDSAGALAAEVRDpgTDFPKAMVVTIVLVTIVYLLP-LAVAISLDHENLDDWTDGH-FAQVAQAHVG-EWLSAWIALGGAISAVGLLNTLL 277
                    ***************8877689****************997.9999999*****8766644.5555555555.*********************** PP

  AA_permease_2 293 igssrvlealardgvlPrffakvn.kfgspiraiiltaivslillllfllassaaynfllsvsslgliisyllliigalilrkkrphlkrpgk... 384
                     +s+rv+ + a+  vlP  +     + g p ra+      s++l++++ll     ++ l+s+s+l++    +l ++++++lr++++h  rp++   
     KOO21116.1 278 CTSARVAASSAKLYVLPPCLGELErRDGQPRRATLAM---SCLLAVACLL----EFSELVSISMLFYGATTFLEFVALIVLRYREEHTYRPYRipl 366
                    ************************99******98643...3466777877....69**********************************999555 PP

  AA_permease_2 385 .......ilvaiigalfllfll.....valffp 405
                           + +  +g+++ll++l     v++ff 
     KOO21116.1 367 gnrmlvvASLPSLGLCVLLIALsdyrsVIFFFF 399
                    555433212222234444444344444444433 PP

>> AA_permease  Amino acid permease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   83.1  13.7   1.8e-27   1.6e-23      20     423 ..      17     385 ..      11     409 .. 0.81

  Alignments for each domain:
  == domain 1  score: 83.1 bits;  conditional E-value: 1.8e-27
  AA_permease  20 gvvlsqaGplgallayl.lagvviflvmlslgeiatngpksggfytyasrflgpelGfviGlnylfswitvlaleltaasiliqfwelvtdlpkawvt 116
                    ++++aGp  +++++l l+++ ++ ++l+++e++ ++p++gg+ ++++r lgp ++   +l  l+  ++  al  +  + +++f +l++ l+ +  +
   KOO21116.1  17 EDAVGAAGPRLTMIGLLlLPMFWSLPIGLMTAELSAMIPEAGGYVVWVHRALGPFWAHQNALWNLVANAFDNALYPVMFVDYLKFFQLFRRLNGLRSW 114
                  568999******9997526899999************************************999****************************999888 PP

  AA_permease 117 ..gavflvvlliinlvgvkvygeaefilalikiiaiiafiivgiillaggkpnkgagfrflgdngsifknnlppgfakeeegafknfisvfvivvfaf 212
                    ++ +l+ ++++nl+gv v +  ++++a+++i  ++a+ i g+ +  + +                  + + p  + +       +  ++++++   
   KOO21116.1 115 lvSVGMLICVTGLNLLGVDVVASSSTLFAVLVISPFAALTIAGA-PALDMH------------------ALFAPCERPI------EWGTFLSVLLWNT 187
                  878889999**********************************2.222222..................1233332222......2445556667889 PP

  AA_permease 213 tGielvaiiagEvkdPeksiPkailqvviritifYvlsllligllvprndlgllndsasaaspfvifikesgvsvlaplinaviltaalssansslys 310
                  +G+ + +++a+Ev+dP  + Pka+  +++++ti+Y+l l+++++l   n ++ +       + f  + + +    l+  i+++  ++a++ +n +l +
   KOO21116.1 188 SGYDSAGALAAEVRDPGTDFPKAMVVTIVLVTIVYLLPLAVAISLDHENLDDWTD------GHFAQVAQAHVGEWLSAWIALGGAISAVGLLNTLLCT 279
                  9*******************************************99999999888......7999********************************* PP

  AA_permease 311 asRvlyslakdglaPkvlkkvskr.gvPlraillsmiisllalllaslnlaapivfnfllaisaliglivwlliilsylrfRkalkyqgrsieelgfk 407
                  + Rv  s ak  ++P +l+ +++r g P ra l+++++ ++a ll+ + l       + + ++++ +++ +++ i+   r+R +  y+  +i  lg +
   KOO21116.1 280 SARVAASSAKLYVLPPCLGELERRdGQPRRATLAMSCLLAVACLLEFSEL-----VSISMLFYGATTFLEFVALIVL--RYREEHTYRPYRI-PLGNR 369
                  ***************888888876499***98876666666664444444.....5777778888888888877764..5577777777766.33333 PP

  AA_permease 408 aallplgvilvlaali 423
                  + ++  ++ l+l +l+
   KOO21116.1 370 MLVVASLPSLGLCVLL 385
                  3333333333333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (415 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       647  (0.0360868); expected 358.6 (0.02)
Passed bias filter:                      307  (0.0171231); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.50u 0.26s 00:00:00.76 Elapsed: 00:00:00.41
# Mc/sec: 3007.93
//
Query:       KOO21117.1  [L=141]
Description: phospholipid methyltransferase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.4e-09   38.3   0.7      2e-09   37.8   0.7    1.3  1  PEMT      Phospholipid methyltransferase
    9.6e-05   22.7   0.2    0.00016   22.0   0.2    1.3  1  ICMT      Isoprenylcysteine carboxyl methyltransferase (ICMT)
  ------ inclusion threshold ------
      0.044   13.3   0.1      0.056   13.0   0.1    1.1  1  DUF1295   Protein of unknown function (DUF1295)


Domain annotation for each model (and alignments):
>> PEMT  Phospholipid methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.8   0.7   3.3e-13     2e-09      32     106 .]      55     129 ..      25     129 .. 0.76

  Alignments for each domain:
  == domain 1  score: 37.8 bits;  conditional E-value: 3.3e-13
        PEMT  32 gdfFlelmdklvtsGiYrylnnPeyvgstlgfl.Gla.LitgsaaglllallvllvylialkfvEephlakiYgkre 106
                 g+fF    + l t+G+Y++++nP+yv+++   +  ++ Li++ +  l+  l++ ++++i++   Ee+ l++ + k++
  KOO21117.1  55 GTFFT-PVNGLATTGLYKFTRNPMYVAVIFFAIpSVScLINSAWPLLVSPLTWCYLNFIVIA-AEEKLLSQTFPKQY 129
                 55555.5778****************998776624442555555557778888999999888.**********9876 PP

>> ICMT  Isoprenylcysteine carboxyl methyltransferase (ICMT) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.0   0.2   2.7e-08   0.00016      35      93 ..      64     122 ..      56     123 .. 0.87

  Alignments for each domain:
  == domain 1  score: 22.0 bits;  conditional E-value: 2.7e-08
        ICMT  35 lvksglykylrHPnYllfvilelatllLlcnakltalvllalvalllf.vRikeEekaLa 93 
                 l ++glyk++r P Y++ ++ ++  ++ l+n     l++++l+ + l    i +Eek L 
  KOO21117.1  64 LATTGLYKFTRNPMYVAVIFFAIPSVSCLINS-AWPLLVSPLTWCYLNfIVIAAEEKLLS 122
                 7799*******************999999888.688899999988887799******996 PP

>> DUF1295  Protein of unknown function (DUF1295)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.1   9.4e-06     0.056     155     233 ..      64     134 ..      59     136 .. 0.73

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 9.4e-06
     DUF1295 155 vldsGLwrysRHPNYfgealiWwglflialealeglealaiagpllltlllvfvsgipllEkkalkkykdkeeyreYqk 233
                 + ++GL++++R P Y +  +i +++  +++   +   + ++++pl  t++ +++  i   Ek   + +   ++y++Y +
  KOO21117.1  64 LATTGLYKFTRNPMYVA--VIFFAIPSVSCLINSA--WPLLVSPL--TWCYLNFIVIAAEEKLLSQTF--PKQYEKYCE 134
                 5689***********95..8889999888876544..69999*97..566666665655554444444..588998865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (141 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       280  (0.0156172); expected 358.6 (0.02)
Passed bias filter:                      208  (0.0116013); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.37u 0.28s 00:00:00.65 Elapsed: 00:00:00.42
# Mc/sec: 1004.27
//
Query:       KOO21118.1  [L=170]
Description: hypothetical protein Ctob_001984 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.4e-10   40.0   0.0    5.7e-10   39.6   0.0    1.2  1  PH        PH domain
     0.0004   20.6   0.8      0.014   15.6   0.1    2.1  2  PH_8      Pleckstrin homology domain
  ------ inclusion threshold ------
      0.021   14.5   0.0      0.032   14.0   0.0    1.4  1  PH_17     PH domain
      0.037   14.4   3.3        1.1    9.8   1.6    2.2  2  PH_11     Pleckstrin homology domain


Domain annotation for each model (and alignments):
>> PH  PH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.6   0.0   1.3e-13   5.7e-10       3     101 ..      31     125 ..      29     129 .. 0.81

  Alignments for each domain:
  == domain 1  score: 39.6 bits;  conditional E-value: 1.3e-13
                 EEEEEEEETSSSSC...SEEEEEEEEETTE..EEEESSTTCTTESSEEEEEESTTEEEEEEECTTSSSSTSEEEEEESTSSSTEEEEEEESSHHHHHHH CS
          PH   3 keGwLlkkgsgkkk...swkkrwfvLkdse..llyykndksekdkepkgsislsncevvevvatedpkrkfcfelriverngsrtyllqasseeerkeW 96 
                  eGwL+kk+ +k+     w  r+f +++    l y kn+ s ++  +    ++++++      + ++  ++cf++  +    + +++l+a+++ e+++W
  KOO21118.1  31 LEGWLQKKHAKKRMfgsEWGTRYFSISQRYgtLNYAKNK-SRSANIMLPLCDMKKVDRL----PIEEYGPYCFSVHCP----PASLILKAEDNAECNRW 120
                 79****99999988999**********88899*******.4444444444444444444....34**********666....7**************** PP

                 HHHHH CS
          PH  97 ikaiq 101
                 i+ai 
  KOO21118.1 121 IEAIT 125
                 ***97 PP

>> PH_8  Pleckstrin homology domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.1   3.2e-06     0.014       1      37 [.      33      72 ..      33      85 .. 0.81
   2 ?    3.6   0.0     0.018        82      70      86 ..     109     125 ..     105     128 .. 0.91

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 3.2e-06
        PH_8  1 gillkkrrkk...lqgyakRfFvLdlksstlsYyrddnss 37
                g+l+kk  kk   + ++  R+F++  +++tl+Y +++  s
  KOO21118.1 33 GWLQKKHAKKrmfGSEWGTRYFSISQRYGTLNYAKNKSRS 72
                7999998776333468*****************9987654 PP

  == domain 2  score: 3.6 bits;  conditional E-value: 0.018
        PH_8  70 LkasnekdfqeWveale 86 
                 Lka+++++ ++W+ea+ 
  KOO21118.1 109 LKAEDNAECNRWIEAIT 125
                 89************985 PP

>> PH_17  PH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.0   7.2e-06     0.032      38      57 ..     105     124 ..      69     126 .. 0.89

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 7.2e-06
       PH_17  38 ealiLRckdeaeAssWfeAi 57 
                  +liL+++d+ae + W eAi
  KOO21118.1 105 ASLILKAEDNAECNRWIEAI 124
                 48*****************9 PP

>> PH_11  Pleckstrin homology domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   1.6   0.00024       1.1       2      34 ..      32      71 ..      31     100 .. 0.83
   2 ?    4.8   0.0    0.0085        38      85     103 ..     107     125 ..      74     127 .. 0.84

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.00024
       PH_11  2 kGylkkkgsk......aWkrrwfavl.kdgvLeyYksekk 34
                +G+l+kk +k       W +r+f++  + g L+y k++  
  KOO21118.1 32 EGWLQKKHAKkrmfgsEWGTRYFSISqRYGTLNYAKNKSR 71
                79*****9999****99******66515569999998865 PP

  == domain 2  score: 4.8 bits;  conditional E-value: 0.0085
       PH_11  85 fflkgdsneeteeWvealk 103
                 ++lk+++n e + W+ea+ 
  KOO21118.1 107 LILKAEDNAECNRWIEAIT 125
                 78***************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (170 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       333  (0.0185733); expected 358.6 (0.02)
Passed bias filter:                      257  (0.0143343); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.42u 0.22s 00:00:00.64 Elapsed: 00:00:00.39
# Mc/sec: 1297.38
//
Query:       KOO21119.1  [L=247]
Description: hypothetical protein Ctob_001985 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    3.6e-22   78.6  17.6      5e-08   33.3   0.3    3.2  5  EF-hand_7     EF-hand domain pair
    3.5e-16   57.7   2.9      0.002   17.9   0.0    4.3  4  EF-hand_6     EF-hand domain
    3.6e-15   54.3   7.1    0.00074   18.9   0.1    4.4  4  EF-hand_1     EF hand
    4.3e-13   48.1   4.2    0.00068   19.0   0.0    4.4  4  EF-hand_5     EF hand
      9e-11   42.1   0.7      0.004   17.5   0.1    3.3  3  SPARC_Ca_bdg  Secreted protein acidic and rich in cysteine Ca
    1.6e-09   37.4   3.3     0.0084   15.9   0.1    4.4  4  EF-hand_8     EF-hand domain pair
    0.00042   20.1   0.9        5.7    6.9   0.0    4.0  4  EF-hand_10    EF hand
  ------ inclusion threshold ------
       0.12   12.3   0.3         14    5.5   0.0    3.1  3  Caleosin      Caleosin related protein
        1.2    9.8   5.3        4.1    8.1   0.3    3.3  3  Excalibur     Excalibur calcium-binding domain
        1.8    8.0   3.1        5.6    6.3   3.1    1.7  1  MSC           Man1-Src1p-C-terminal domain


Domain annotation for each model (and alignments):
>> EF-hand_7  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.6   0.2   7.9e-05      0.14      43      69 ..      71      97 ..      60      99 .. 0.82
   2 !   29.6   1.6   3.8e-10   6.9e-07       6      65 ..      76     131 ..      70     137 .. 0.83
   3 !   33.3   0.3   2.8e-11     5e-08       5      69 ..     113     192 ..     112     194 .. 0.83
   4 !   28.4   0.1   9.6e-10   1.7e-06       7      69 ..     172     230 ..     167     232 .. 0.86
   5 !   10.6   0.0   0.00034      0.62       8      29 ..     211     232 ..     205     245 .. 0.78

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 7.9e-05
   EF-hand_7 43 deelellfkefDtdkdGvisfdEFlkl 69
                ++   +lf+ +D+++d+ + +dE++++
  KOO21119.1 71 EHMAARLFNRLDKNSDDMLQRDEMRAM 97
                45577999***************9986 PP

  == domain 2  score: 29.6 bits;  conditional E-value: 3.8e-10
   EF-hand_7   6 eaFkelDtdgdgyldkeellrllrkifqga.gegsklsdeelellfkefDtdkdGvisfdE 65 
                 + F+ lD++ d +l ++e++ +l  i+++a   g++   e+  +lfk +D d+dG++s++E
  KOO21119.1  76 RLFNRLDKNSDDMLQRDEMRAMLDEINAAArAKGEP---EH--DLFKTLDRDQDGKVSRTE 131
                 56******************9999999885444444...33..7***************99 PP

  == domain 3  score: 33.3 bits;  conditional E-value: 2.8e-11
   EF-hand_7   5 keaFkelDtdgdgyldkeellrllrkifqga................gegsklsdeelellfkefDtdkdGvisfdEFlkl 69 
                 ++ Fk lD+d+dg+++++e ++ ++++ ++                 ++g +   +  + +f ++D +kdG++s  E+++ 
  KOO21119.1 113 HDLFKTLDRDQDGKVSRTEAEETFKAMAAKMmqststpaskagskdqSPGMS-EHDMADGMFTNLDANKDGQLSKAEMKAV 192
                 578****************888777655555888888989888887777777.44689*******************9875 PP

  == domain 4  score: 28.4 bits;  conditional E-value: 9.6e-10
   EF-hand_7   7 aFkelDtdgdgyldkeellrllrkifqgagegsklsdeelellfkefDtdkdGvisfdEFlkl 69 
                 +F  lD ++dg l+k+e++ +l+++      ++   ++e++ +    D d +G++s +E + +
  KOO21119.1 172 MFTNLDANKDGQLSKAEMKAVLEQFA---AQQKAEGEDEVDFWASL-DADTNGYLSKTEVQGF 230
                 799********************998...55666677888888766.************8876 PP

  == domain 5  score: 10.6 bits;  conditional E-value: 0.00034
   EF-hand_7   8 FkelDtdgdgyldkeellrllr 29 
                 + +lD d +gyl+k+e++ ++ 
  KOO21119.1 211 WASLDADTNGYLSKTEVQGFIA 232
                 456*************986554 PP

>> EF-hand_6  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.4   0.1   3.2e-05     0.057       4      27 ..      76      99 ..      73     105 .. 0.92
   2 !   14.9   0.1     1e-05     0.018       4      23 ..     114     133 ..     112     140 .. 0.86
   3 !   17.9   0.0   1.1e-06     0.002       5      28 ..     172     195 ..     169     204 .. 0.90
   4 !    8.7   0.0     0.001       1.8       4      26 ..     209     231 ..     207     237 .. 0.87

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 3.2e-05
   EF-hand_6  4 eaFklfDkdgdGkidaeElrkalr 27
                ++F+ +Dk+ d  + ++E+r++l 
  KOO21119.1 76 RLFNRLDKNSDDMLQRDEMRAMLD 99
                69********************96 PP

  == domain 2  score: 14.9 bits;  conditional E-value: 1e-05
   EF-hand_6   4 eaFklfDkdgdGkidaeElr 23 
                 ++Fk +D+d dGk+++ E  
  KOO21119.1 114 DLFKTLDRDQDGKVSRTEAE 133
                 89**************9965 PP

  == domain 3  score: 17.9 bits;  conditional E-value: 1.1e-06
   EF-hand_6   5 aFklfDkdgdGkidaeElrkalrk 28 
                  F  +D ++dG+++++E++++l +
  KOO21119.1 172 MFTNLDANKDGQLSKAEMKAVLEQ 195
                 599******************986 PP

  == domain 4  score: 8.7 bits;  conditional E-value: 0.001
   EF-hand_6   4 eaFklfDkdgdGkidaeElrkal 26 
                 +++  +D d +G++++ E++ ++
  KOO21119.1 209 DFWASLDADTNGYLSKTEVQGFI 231
                 678889*************9876 PP

>> EF-hand_1  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.2   0.3   0.00012      0.21       4      27 ..      76      99 ..      74     101 .. 0.91
   2 !   15.9   0.1   3.8e-06    0.0068       4      27 ..     114     137 ..     113     139 .. 0.85
   3 !   18.9   0.1   4.2e-07   0.00074       3      27 ..     170     194 ..     168     196 .. 0.90
   4 !    9.8   0.0   0.00032      0.58       5      28 ..     210     233 ..     208     234 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00012
                HHHHHHTTTSSSEEEHHHHHHHHH CS
   EF-hand_1  4 eiFrefDkDgdGkIdfeEfkellk 27
                ++F+ +Dk+ d  + ++E++++l 
  KOO21119.1 76 RLFNRLDKNSDDMLQRDEMRAMLD 99
                68*******************985 PP

  == domain 2  score: 15.9 bits;  conditional E-value: 3.8e-06
                 HHHHHHTTTSSSEEEHHHHHHHHH CS
   EF-hand_1   4 eiFrefDkDgdGkIdfeEfkellk 27 
                 ++F+ +D+D+dGk+++ E  e +k
  KOO21119.1 114 DLFKTLDRDQDGKVSRTEAEETFK 137
                 68**************99777666 PP

  == domain 3  score: 18.9 bits;  conditional E-value: 4.2e-07
                 HHHHHHHTTTSSSEEEHHHHHHHHH CS
   EF-hand_1   3 keiFrefDkDgdGkIdfeEfkellk 27 
                 + +F  +D ++dG++++ E+k++l+
  KOO21119.1 170 DGMFTNLDANKDGQLSKAEMKAVLE 194
                 669******************9987 PP

  == domain 4  score: 9.8 bits;  conditional E-value: 0.00032
                 HHHHHTTTSSSEEEHHHHHHHHHH CS
   EF-hand_1   5 iFrefDkDgdGkIdfeEfkellkk 28 
                 +++ +D D +G++++ E + ++++
  KOO21119.1 210 FWASLDADTNGYLSKTEVQGFIAA 233
                 67889************9988765 PP

>> EF-hand_5  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.5   0.1     0.007        12       4      23 ..      77      96 ..      73      98 .. 0.77
   2 !   18.8   0.1   4.6e-07   0.00082       3      22 ..     114     133 ..     113     137 .. 0.87
   3 !   19.0   0.0   3.8e-07   0.00068       3      24 ..     170     192 ..     168     193 .. 0.87
   4 ?    3.5   0.0     0.031        56       8      22 ..     214     228 ..     212     231 .. 0.85

  Alignments for each domain:
  == domain 1  score: 5.5 bits;  conditional E-value: 0.007
                HHHHH-SS-SSCE-HHHHHH CS
   EF-hand_5  4 tFqaiDlNgDGkIskeELkt 23
                +F+++D+N D  + ++E ++
  KOO21119.1 77 LFNRLDKNSDDMLQRDEMRA 96
                8********97777777766 PP

  == domain 2  score: 18.8 bits;  conditional E-value: 4.6e-07
                 HHHHHH-SS-SSCE-HHHHH CS
   EF-hand_5   3 dtFqaiDlNgDGkIskeELk 22 
                 d+F+ +D ++DGk+s+ E +
  KOO21119.1 114 DLFKTLDRDQDGKVSRTEAE 133
                 79***************965 PP

  == domain 3  score: 19.0 bits;  conditional E-value: 3.8e-07
                 H.HHHHH-SS-SSCE-HHHHHHH CS
   EF-hand_5   3 d.tFqaiDlNgDGkIskeELktl 24 
                 d +F  +D+N+DG++sk E k++
  KOO21119.1 170 DgMFTNLDANKDGQLSKAEMKAV 192
                 557899**************997 PP

  == domain 4  score: 3.5 bits;  conditional E-value: 0.031
                 H-SS-SSCE-HHHHH CS
   EF-hand_5   8 iDlNgDGkIskeELk 22 
                 +D++  G++sk E +
  KOO21119.1 214 LDADTNGYLSKTEVQ 228
                 799*********976 PP

>> SPARC_Ca_bdg  Secreted protein acidic and rich in cysteine Ca binding region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5   0.1   2.2e-06     0.004      49     109 ..      67     131 ..      52     135 .. 0.77
   2 !   15.3   0.0     1e-05     0.018      35      81 ..     148     194 ..     133     202 .. 0.74
   3 !    6.3   0.0    0.0064        11      58      85 ..     210     236 ..     194     239 .. 0.79

  Alignments for each domain:
  == domain 1  score: 17.5 bits;  conditional E-value: 2.2e-06
  SPARC_Ca_bdg  49 lkeckepvawkFsklDtnsdkvlsksELaplraplv....klehCikpflescDadkdkkislkE 109
                   +++ ++ +a  F++lD+nsd +l++ E++++  ++        +  + ++++ D d+d+k+s++E
    KOO21119.1  67 TPKLEHMAARLFNRLDKNSDDMLQRDEMRAMLDEINaaarAKGEPEHDLFKTLDRDQDGKVSRTE 131
                   55666777778****************877665555000045566789**************988 PP

  == domain 2  score: 15.3 bits;  conditional E-value: 1e-05
  SPARC_Ca_bdg  35 ehleelekkeeeknlkeckepvawkFsklDtnsdkvlsksELaplra 81 
                   ++ ++++ +++++   + ++ +  +F++lD n+d+ lsk+E++++ +
    KOO21119.1 148 STPASKAGSKDQSPGMSEHDMADGMFTNLDANKDGQLSKAEMKAVLE 194
                   334556666777777778889999******************99866 PP

  == domain 3  score: 6.3 bits;  conditional E-value: 0.0064
  SPARC_Ca_bdg  58 wkFsklDtnsdkvlsksELaplraplvk 85 
                   + + +lD +++++lsk+E++   a ++k
    KOO21119.1 210 F-WASLDADTNGYLSKTEVQGFIAAMMK 236
                   4.899**************998887776 PP

>> EF-hand_8  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.9   0.1      0.24   4.3e+02      31      52 ..      77      98 ..      74     103 .. 0.74
   2 !   14.1   0.0   1.8e-05     0.032      30      47 ..     114     131 ..     112     131 .. 0.93
   3 !   15.9   0.1   4.7e-06    0.0084      21      53 ..     147     194 ..     133     195 .. 0.75
   4 ?    3.4   0.0     0.039        70      35      47 ..     214     226 ..     212     232 .. 0.91

  Alignments for each domain:
  == domain 1  score: 0.9 bits;  conditional E-value: 0.24
   EF-hand_8 31 lfrefDtdgdGkisfeEFcvll 52
                lf+++D + d ++  +E  ++l
  KOO21119.1 77 LFNRLDKNSDDMLQRDEMRAML 98
                6888888888888777766665 PP

  == domain 2  score: 14.1 bits;  conditional E-value: 1.8e-05
   EF-hand_8  30 ilfrefDtdgdGkisfeE 47 
                 +lf+++D+d+dGk+s +E
  KOO21119.1 114 DLFKTLDRDQDGKVSRTE 131
                 79*************998 PP

  == domain 3  score: 15.9 bits;  conditional E-value: 4.7e-06
   EF-hand_8  21 k..............glseee.vdilfrefDtdgdGkisfeEFcvlle 53 
                                g+se++ +d +f  +D ++dG +s+ E  ++le
  KOO21119.1 147 TstpaskagskdqspGMSEHDmADGMFTNLDANKDGQLSKAEMKAVLE 194
                 3555566666668999*****9********************988876 PP

  == domain 4  score: 3.4 bits;  conditional E-value: 0.039
   EF-hand_8  35 fDtdgdGkisfeE 47 
                 +D d +G++s++E
  KOO21119.1 214 LDADTNGYLSKTE 226
                 69*********99 PP

>> EF-hand_10  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.9   0.0    0.0032       5.7      22      47 ..      73      98 ..      70     104 .. 0.86
   2 ?    5.0   0.1     0.012        22      25      47 ..     114     136 ..     108     139 .. 0.88
   3 ?    3.4   0.0     0.038        68      23      45 ..     169     191 ..     164     196 .. 0.86
   4 ?   -0.5   0.0      0.65   1.2e+03      31      47 ..     215     231 ..     212     234 .. 0.80

  Alignments for each domain:
  == domain 1  score: 6.9 bits;  conditional E-value: 0.0032
  EF-hand_10 22 YAekLFkkcDkSksgrLegeEieeFy 47
                 A  LF + Dk  ++ L+  E+   +
  KOO21119.1 73 MAARLFNRLDKNSDDMLQRDEMRAML 98
                5899***************9997665 PP

  == domain 2  score: 5.0 bits;  conditional E-value: 0.012
  EF-hand_10  25 kLFkkcDkSksgrLegeEieeFy 47 
                  LFk+ D+ ++g+    E ee +
  KOO21119.1 114 DLFKTLDRDQDGKVSRTEAEETF 136
                 69************999998755 PP

  == domain 3  score: 3.4 bits;  conditional E-value: 0.038
  EF-hand_10  23 AekLFkkcDkSksgrLegeEiee 45 
                 A  +F + D  k+g+L   E++ 
  KOO21119.1 169 ADGMFTNLDANKDGQLSKAEMKA 191
                 8899**************99875 PP

  == domain 4  score: -0.5 bits;  conditional E-value: 0.65
  EF-hand_10  31 DkSksgrLegeEieeFy 47 
                 D   +g+L   E++ F 
  KOO21119.1 215 DADTNGYLSKTEVQGFI 231
                 55678999999999986 PP

>> Caleosin  Caleosin related protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.4   0.0      0.15   2.6e+02      98     121 ..      77     100 ..      70     110 .. 0.72
   2 ?    5.5   0.0    0.0079        14      13      41 ..     119     147 ..     112     154 .. 0.89
   3 ?    1.5   0.1      0.14   2.5e+02      96     123 ..     170     197 ..     150     233 .. 0.63

  Alignments for each domain:
  == domain 1  score: 1.4 bits;  conditional E-value: 0.15
    Caleosin  98 ifskyakekkdaltlkevlellkg 121
                 +f++ +k+++d l+ +e+ ++l +
  KOO21119.1  77 LFNRLDKNSDDMLQRDEMRAMLDE 100
                 677777777777777777777765 PP

  == domain 2  score: 5.5 bits;  conditional E-value: 0.0079
    Caleosin  13 fDrdkdGiiypldtyrgfralgfnvllsl 41 
                  Drd+dG +  ++  + f+a+  +++ s+
  KOO21119.1 119 LDRDQDGKVSRTEAEETFKAMAAKMMQST 147
                 59*******************99999886 PP

  == domain 3  score: 1.5 bits;  conditional E-value: 0.14
    Caleosin  96 eeifskyakekkdaltlkevlellkgqr 123
                 + +f++ +++k+++l+  e++++l++  
  KOO21119.1 170 DGMFTNLDANKDGQLSKAEMKAVLEQFA 197
                 5577777777777777777777665433 PP

>> Excalibur  Excalibur calcium-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.1   0.3    0.0023       4.1       6      34 ..     100     125 ..      99     126 .. 0.78
   2 ?    2.0   0.1      0.18   3.3e+02      26      34 ..     174     182 ..     150     183 .. 0.77
   3 ?   -0.6   0.0       1.2   2.2e+03      26      34 ..     212     220 ..     194     221 .. 0.54

  Alignments for each domain:
  == domain 1  score: 8.1 bits;  conditional E-value: 0.0023
   Excalibur   6 elrkagkggvakgapgYkankklDrDkDG 34 
                 e ++a+    akg+p+ ++ k lDrD DG
  KOO21119.1 100 EINAAAR---AKGEPEHDLFKTLDRDQDG 125
                 5566666...78888888779*******9 PP

  == domain 2  score: 2.0 bits;  conditional E-value: 0.18
   Excalibur  26 kklDrDkDG 34 
                 + lD +kDG
  KOO21119.1 174 TNLDANKDG 182
                 78******9 PP

  == domain 3  score: -0.6 bits;  conditional E-value: 1.2
   Excalibur  26 kklDrDkDG 34 
                   lD D +G
  KOO21119.1 212 ASLDADTNG 220
                 579999888 PP

>> MSC  Man1-Src1p-C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.3   3.1    0.0031       5.6      98     175 ..      75     149 ..      62     230 .. 0.77

  Alignments for each domain:
  == domain 1  score: 6.3 bits;  conditional E-value: 0.0031
         MSC  98 erkvkevakkalelLreknakvecgeskddeekakksglseeeLkeslsekksksiskeefeelwkealkeLkkeeei 175
                 +r+ +++ k++ ++L++   +    e ++    a+++g  e++L ++l + ++ ++s+ e ee++k+  +++ ++   
  KOO21119.1  75 ARLFNRLDKNSDDMLQRDEMRAMLDEINAA---ARAKGEPEHDLFKTLDRDQDGKVSRTEAEETFKAMAAKMMQSTST 149
                 455556666666666666666666666555...599**************99999************99999998665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (247 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1017  (0.0567237); expected 358.6 (0.02)
Passed bias filter:                      582  (0.0324614); expected 358.6 (0.02)
Passed Vit filter:                        52  (0.00290033); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.46u 0.25s 00:00:00.71 Elapsed: 00:00:00.38
# Mc/sec: 1948.26
//
Query:       KOO21120.1  [L=401]
Description: rhabdoid tumor deletion region protein 1 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
     0.0006   19.8  14.4       0.45   10.6   0.2    5.8  4  Arm       Armadillo/beta-catenin-like repeat
     0.0028   17.8   3.0       0.08   13.2   0.2    3.9  3  HEAT      HEAT repeat
  ------ inclusion threshold ------
       0.02   15.1   0.1        5.6    7.2   0.0    3.4  4  RTP1_C1   Required for nuclear transport of RNA pol II C-term
       0.16   12.0   0.0       0.81    9.7   0.0    2.2  2  Cnd1      non-SMC mitotic condensation complex subunit 1
       0.23   12.0   3.9         15    6.2   0.0    4.2  4  HEAT_EZ   HEAT-like repeat
          2    8.7   7.3         17    5.8   5.4    2.8  3  DUF3017   Protein of unknown function (DUF3017)
        2.8    8.4   8.7        7.7    7.0   0.2    3.8  5  HEAT_2    HEAT repeats


Domain annotation for each model (and alignments):
>> Arm  Armadillo/beta-catenin-like repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.8   0.0     0.051   1.3e+02      15      34 ..      53      72 ..      53      78 .. 0.90
   2 ?   -0.1   0.2      0.43   1.1e+03      14      34 ..     137     157 ..     135     161 .. 0.86
   3 !   10.6   0.2   0.00017      0.45       2      22 ..     256     276 ..     255     305 .. 0.85
   4 !    7.3   1.6     0.002       5.1      19      40 ..     337     358 ..     307     359 .. 0.86

  Alignments for each domain:
  == domain 1  score: 2.8 bits;  conditional E-value: 0.051
                HHHHHHTTTSSHHHHHHHHH CS
         Arm 15 ppLvrLLssedeevqeeAaw 34
                p Lv+  +s d+e+++ A++
  KOO21120.1 53 PKLVNQATSSDDELRRKALA 72
                89**************9987 PP

  == domain 2  score: -0.1 bits;  conditional E-value: 0.43
                 HHHHHHHTTTSSHHHHHHHHH CS
         Arm  14 vppLvrLLssedeevqeeAaw 34 
                 v +L+rL  ++ + v+ +A++
  KOO21120.1 137 VGALLRLVCDPEPVVRANALA 157
                 568999999999999999985 PP

  == domain 3  score: 10.6 bits;  conditional E-value: 0.00017
                 HHHHHHHHHTTHHHHHHHHTT CS
         Arm   2 senkdavieaGavppLvrLLs 22 
                 +e+k++ +++G++++Lv++L+
  KOO21120.1 256 PEQKMLAVSQGVLRVLVSMLT 276
                 89******************8 PP

  == domain 4  score: 7.3 bits;  conditional E-value: 0.002
                 HHTTTSSHHHHHHHHHHHHHHT CS
         Arm  19 rLLssedeevqeeAawALsNLa 40 
                 +L+++ + +++++A+ ++sNLa
  KOO21120.1 337 QLMTNASSTLTTNALKCISNLA 358
                 678899**************98 PP

>> HEAT  HEAT repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.5   0.0      0.39     1e+03       3      25 ..      53      75 ..      52      80 .. 0.75
   2 !   13.2   0.2   3.1e-05      0.08       4      28 ..     139     163 ..     137     165 .. 0.88
   3 ?    0.8   0.1      0.32   8.3e+02      19      29 ..     349     359 ..     348     360 .. 0.88

  Alignments for each domain:
  == domain 1  score: 0.5 bits;  conditional E-value: 0.39
                HHHHHHHT-SSHHHHHHHHHHHH CS
        HEAT  3 PlllkllsDpspeVReaAakaLg 25
                P l++  ++++ e R+ A+  + 
  KOO21120.1 53 PKLVNQATSSDDELRRKALAHIL 75
                77888888999999888886655 PP

  == domain 2  score: 13.2 bits;  conditional E-value: 3.1e-05
                 HHHHHHT-SSHHHHHHHHHHHHHHH CS
        HEAT   4 lllkllsDpspeVReaAakaLgala 28 
                 +ll+l +Dp+p VR++A+  + +l+
  KOO21120.1 139 ALLRLVCDPEPVVRANALAVCLQLS 163
                 699999************9988876 PP

  == domain 3  score: 0.8 bits;  conditional E-value: 0.32
                 HHHHHHHHHHH CS
        HEAT  19 aAakaLgalae 29 
                 +A+k++ +lae
  KOO21120.1 349 NALKCISNLAE 359
                 79*******98 PP

>> RTP1_C1  Required for nuclear transport of RNA pol II C-terminus 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.0       2.7     7e+03      26      49 ..      55      78 ..      47      96 .. 0.58
   2 ?    2.8   0.0      0.05   1.3e+02       5      32 ..     141     168 ..     138     209 .. 0.72
   3 ?    7.2   0.0    0.0022       5.6       7      51 ..     233     277 ..     231     287 .. 0.91
   4 ?    0.1   0.0      0.34   8.8e+02       9      81 ..     309     340 ..     291     360 .. 0.57

  Alignments for each domain:
  == domain 1  score: -2.8 bits;  conditional E-value: 2.7
     RTP1_C1 26 liekkskeavldiekilkllleaL 49
                l+++ ++++ +  +k l  +le+L
  KOO21120.1 55 LVNQATSSDDELRRKALAHILEML 78
                444444444444444444444433 PP

  == domain 2  score: 2.8 bits;  conditional E-value: 0.05
     RTP1_C1   5 lkdlqdpllpvrahglvlLrkliekksk 32 
                 l+ + dp++ vra++l    +l + ++ 
  KOO21120.1 141 LRLVCDPEPVVRANALAVCLQLSRFRDG 168
                 67889***********988887776664 PP

  == domain 3  score: 7.2 bits;  conditional E-value: 0.0022
     RTP1_C1   7 dlqdpllpvrahglvlLrkliekkskeavldiekilkllleaLkd 51 
                 +l+ p+++v  hg  lLr+l    +++ ++  + +l++l+++L+ 
  KOO21120.1 233 QLEQPIPAVCEHGFALLRTLTLGPEQKMLAVSQGVLRVLVSMLTP 277
                 68999************************************9985 PP

  == domain 4  score: 0.1 bits;  conditional E-value: 0.34
     RTP1_C1   9 qdpllpvrahglvlLrkliekkskeavldiekilkllleaLkdedsYvYLnaikgLvaLadvfpeevlklLle 81 
                 ++++ +v+  ++  L+++++++                                         ++   k+L+ 
  KOO21120.1 309 ESKEEAVKLGAIAPLSDIVHAS-----------------------------------------HDAEAKQLMT 340
                 4444445555555555555544.........................................4444444433 PP

>> Cnd1  non-SMC mitotic condensation complex subunit 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   0.0   0.00032      0.81      59      93 ..     136     170 ..     109     212 .. 0.73
   2 ?   -1.8   0.0       1.1   2.7e+03      95     104 ..     337     346 ..     292     373 .. 0.56

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 0.00032
        Cnd1  59 flselaklleDenprVvanalaalteiseksenai 93 
                  +  l++l++D++p V+anala+  ++s+  + a 
  KOO21120.1 136 TVGALLRLVCDPEPVVRANALAVCLQLSRFRDGAR 170
                 77889999999999999999999998887754444 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 1.1
        Cnd1  95 nllpdiiskl 104
                 +l+ +  s l
  KOO21120.1 337 QLMTNASSTL 346
                 2222222222 PP

>> HEAT_EZ  HEAT-like repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.2   0.0    0.0058        15      31      51 ..      53      73 ..      52      78 .. 0.88
   2 ?    3.3   0.2     0.047   1.2e+02      30      49 ..     137     156 ..     134     159 .. 0.88
   3 ?   -1.4   0.1       1.4   3.5e+03      15      36 ..     180     201 ..     166     208 .. 0.53
   4 ?   -1.4   0.0       1.4   3.7e+03       7      28 ..     350     374 ..     348     381 .. 0.54

  Alignments for each domain:
  == domain 1  score: 6.2 bits;  conditional E-value: 0.0058
     HEAT_EZ 31 paLlalLnddsdeVRaaAaga 51
                p L++  ++++de R +A+ +
  KOO21120.1 53 PKLVNQATSSDDELRRKALAH 73
                89************8888766 PP

  == domain 2  score: 3.3 bits;  conditional E-value: 0.047
     HEAT_EZ  30 lpaLlalLnddsdeVRaaAa 49 
                 + aLl+l +d+++ VRa+A+
  KOO21120.1 137 VGALLRLVCDPEPVVRANAL 156
                 67899999**********97 PP

  == domain 3  score: -1.4 bits;  conditional E-value: 1.4
     HEAT_EZ  15 aggepellqplvpeilpaLlal 36 
                  +++++  ++l +++ + L+al
  KOO21120.1 180 VFVRRCSEEKLADQLAAVLAAL 201
                 4444444444444444444433 PP

  == domain 4  score: -1.4 bits;  conditional E-value: 1.4
     HEAT_EZ   7 AawaLGr...laggepellqplvpe 28 
                 A+ ++++   ++ g+++l  +++p+
  KOO21120.1 350 ALKCISNlaeCPLGRKQLRTKALPD 374
                 6667766333444454444445555 PP

>> DUF3017  Protein of unknown function (DUF3017)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.8   5.4    0.0066        17      10      68 ..     114     178 ..     109     182 .. 0.69
   2 ?    1.7   1.8      0.13   3.2e+02      13      49 ..     158     194 ..     150     199 .. 0.77
   3 ?   -2.1   0.0       1.9   4.8e+03      32      47 ..     196     211 ..     193     212 .. 0.60

  Alignments for each domain:
  == domain 1  score: 5.8 bits;  conditional E-value: 0.0066
     DUF3017  10 vglllvaldhwRrGalllGvalllaAvlRlvlpsr...rvGlLaVR...sRafDvllllvlGaai 68 
                 ++ll  a d   rGa+l  ++  ++A+lRlv++ +   r+  LaV    sR+ D +  l+ G+ +
  KOO21120.1 114 AALLPLAKDLNGRGAILAQGSATVGALLRLVCDPEpvvRANALAVClqlSRFRDGARALIAGGCV 178
                 3344466666779999999*************877555777888744446666666666666555 PP

  == domain 2  score: 1.7 bits;  conditional E-value: 0.13
     DUF3017  13 llvaldhwRrGalllGvalllaAvlRlvlpsrrvGlL 49 
                 +   l+++R Ga +l ++ ++a ++R +  ++ +  L
  KOO21120.1 158 VCLQLSRFRDGARALIAGGCVAVFVRRCSEEKLADQL 194
                 3455679********9999*******99888766555 PP

  == domain 3  score: -2.1 bits;  conditional E-value: 1.9
     DUF3017  32 llaAvlRlvlpsrrvG 47 
                 +++A+l +v++++ +G
  KOO21120.1 196 AVLAALTMVTDTEAAG 211
                 3556666666666666 PP

>> HEAT_2  HEAT repeats
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.6   0.1     0.034        86       2      24 ..      53      74 ..      52     117 .. 0.72
   2 ?    7.0   0.2     0.003       7.7      31      53 ..     135     157 ..     112     174 .. 0.80
   3 ?    6.4   0.4    0.0047        12      34      53 ..     138     157 ..     135     217 .. 0.69
   4 ?   -0.5   0.1      0.67   1.7e+03      50      78 ..     296     334 ..     271     344 .. 0.51
   5 ?    0.4   0.1      0.35     9e+02      36      58 ..     335     357 ..     298     393 .. 0.47

  Alignments for each domain:
  == domain 1  score: 3.6 bits;  conditional E-value: 0.034
      HEAT_2  2 daLlqalendpdpevrraairaL 24
                ++L++++ +++d+e+rr+a+  +
  KOO21120.1 53 PKLVNQA-TSSDDELRRKALAHI 74
                5788888.778888887666433 PP

  == domain 2  score: 7.0 bits;  conditional E-value: 0.003
      HEAT_2  31 ealpaLvellededpavRraaae 53 
                  ++ aL++l+ d++p vR++a  
  KOO21120.1 135 ATVGALLRLVCDPEPVVRANALA 157
                 56889999999999999999875 PP

  == domain 3  score: 6.4 bits;  conditional E-value: 0.0047
      HEAT_2  34 paLvellededpavRraaae 53 
                  aL++l+ d++p vR++a  
  KOO21120.1 138 GALLRLVCDPEPVVRANALA 157
                 56677777777777776654 PP

  == domain 4  score: -0.5 bits;  conditional E-value: 0.67
      HEAT_2  50 aaaeaLgai......gdpe......alpaLkellddddddv 78 
                 +aa aL  i      +  e      a++ L ++++  +d++
  KOO21120.1 296 EAAGALMSItahtesK--EeavklgAIAPLSDIVHASHDAE 334
                 3333333332221111..12233445555555555555554 PP

  == domain 5  score: 0.4 bits;  conditional E-value: 0.35
      HEAT_2  36 LvellededpavRraaaeaLgai 58 
                   +l++++++    +a + ++ +
  KOO21120.1 335 AKQLMTNASSTLTTNALKCISNL 357
                 44444444444444444444433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (401 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       593  (0.0330749); expected 358.6 (0.02)
Passed bias filter:                      482  (0.0268838); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.51u 0.28s 00:00:00.79 Elapsed: 00:00:00.42
# Mc/sec: 2854.27
//
Query:       KOO21121.1  [L=144]
Description: hypothetical protein Ctob_001981 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.13   12.2   0.0       0.18   11.7   0.0    1.2  1  Trm56     tRNA ribose 2'-O-methyltransferase, aTrm56


Domain annotation for each model (and alignments):
>> Trm56  tRNA ribose 2'-O-methyltransferase, aTrm56
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0     1e-05      0.18       5      46 ..      41      83 ..      39     102 .. 0.76

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 1e-05
                -EEE.E--HHHHHHC-S...S.EEEEE-TTSEEHHHHHHHHHC CS
       Trm56  5 fkvevakslkklikefkkegg.ivvhltmyGenieevieeikk 46
                f+ ++++  ++ ik + + +g  vv ltm G +++++ e+++ 
  KOO21121.1 41 FRADTESAGRAHIKAWAALNGvDVVALTMQGSSLDRFEEDVTI 83
                566777888999****99655269************9999853 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (144 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       281  (0.0156729); expected 358.6 (0.02)
Passed bias filter:                      259  (0.0144459); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.21s 00:00:00.56 Elapsed: 00:00:00.36
# Mc/sec: 1198.24
//
Query:       KOO21122.1  [L=203]
Description: troponin c [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.3e-12   46.3   0.0    1.9e-05   23.8   0.0    2.3  2  EF-hand_1        EF hand
    3.4e-12   46.6   0.0    5.9e-12   45.9   0.0    1.4  1  EF-hand_7        EF-hand domain pair
    3.8e-11   42.7   0.0    7.2e-10   38.6   0.0    2.1  2  EF-hand_8        EF-hand domain pair
    4.8e-09   35.4   0.0     0.0017   18.1   0.0    2.7  3  EF-hand_6        EF-hand domain
    1.4e-07   30.6   0.0     0.0017   17.7   0.0    3.1  3  EF-hand_5        EF hand
    1.7e-05   25.0   0.0    2.8e-05   24.3   0.0    1.3  1  EF-hand_9        EF-hand domain
    0.00011   20.9   0.0    0.00015   20.5   0.0    1.1  1  DUF5580          Family of unknown function (DUF5580)
    0.00077   19.4   0.4     0.0047   16.9   0.0    2.2  2  Frankia_peptide  Ribosomally synthesized peptide prototyped b
  ------ inclusion threshold ------
      0.015   15.2   0.0      0.024   14.6   0.0    1.3  1  EF-hand_4        Cytoskeletal-regulatory complex EF hand
      0.042   14.7   0.0      0.062   14.2   0.0    1.2  1  EF-hand_11       EF-hand domain
      0.052   13.9   0.0       0.12   12.7   0.0    1.5  1  SPARC_Ca_bdg     Secreted protein acidic and rich in cysteine
      0.079   13.3   0.0       0.15   12.4   0.0    1.4  1  DUF1456          Protein of unknown function (DUF1456)


Domain annotation for each model (and alignments):
>> EF-hand_1  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.4   0.0   1.6e-07   0.00024       5      28 ..       9      32 ..       5      33 .. 0.91
   2 !   23.8   0.0   1.3e-08   1.9e-05       1      26 [.      41      66 ..      41      69 .. 0.90

  Alignments for each domain:
  == domain 1  score: 20.4 bits;  conditional E-value: 1.6e-07
                HHHHHTTTSSSEEEHHHHHHHHHH CS
   EF-hand_1  5 iFrefDkDgdGkIdfeEfkellkk 28
                iF++fD + +G+++  E+ e++k+
  KOO21122.1  9 IFDKFDANSSGTVSTTELAEMCKA 32
                9********************997 PP

  == domain 2  score: 23.8 bits;  conditional E-value: 1.3e-08
                HHHHHHHHHTTTSSSEEEHHHHHHHH CS
   EF-hand_1  1 elkeiFrefDkDgdGkIdfeEfkell 26
                el+ i +++D D++G Idf+Ef++ l
  KOO21122.1 41 ELQAIVNDADPDNSGEIDFNEFVATL 66
                789999****************9876 PP

>> EF-hand_7  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.9   0.0     4e-15   5.9e-12       3      68 ..       5      64 ..       3      66 .. 0.96

  Alignments for each domain:
  == domain 1  score: 45.9 bits;  conditional E-value: 4e-15
   EF-hand_7  3 klkeaFkelDtdgdgyldkeellrllrkifqgagegsklsdeelellfkefDtdkdGvisfdEFlk 68
                +l+ +F+++D + +g ++ +el ++++        g +l++eel++++++ D d++G+i+f+EF++
  KOO21122.1  5 QLRPIFDKFDANSSGTVSTTELAEMCK------AIGMNLTPEELQAIVNDADPDNSGEIDFNEFVA 64
                7899***********************......99*****************************86 PP

>> EF-hand_8  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.9   0.0   0.00089       1.3      31      51 ..       9      29 ..       5      31 .. 0.88
   2 !   38.6   0.0   4.8e-13   7.2e-10       2      54 ..      18      68 ..      17      69 .. 0.93

  Alignments for each domain:
  == domain 1  score: 8.9 bits;  conditional E-value: 0.00089
   EF-hand_8 31 lfrefDtdgdGkisfeEFcvl 51
                +f++fD + +G++s +E  ++
  KOO21122.1  9 IFDKFDANSSGTVSTTELAEM 29
                8***************98766 PP

  == domain 2  score: 38.6 bits;  conditional E-value: 4.8e-13
   EF-hand_8  2 kgkItreelrrilrilglkkglseeevdilfrefDtdgdGkisfeEFcvller 54
                +g ++++el ++ +++g++  l++ee++++++ +D d++G i+f+EF++ l+r
  KOO21122.1 18 SGTVSTTELAEMCKAIGMN--LTPEELQAIVNDADPDNSGEIDFNEFVATLVR 68
                799********77999***..***************************98877 PP

>> EF-hand_6  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.1   0.0   1.1e-06    0.0017       2      30 ..       6      33 ..       5      34 .. 0.88
   2 ?   -0.1   0.0      0.78   1.2e+03      17      27 ..      37      47 ..      36      49 .. 0.85
   3 !   14.3   0.0   1.9e-05     0.029       2      26 ..      42      66 ..      41      77 .. 0.86

  Alignments for each domain:
  == domain 1  score: 18.1 bits;  conditional E-value: 1.1e-06
   EF-hand_6  2 lreaFklfDkdgdGkidaeElrkalrkal 30
                lr +F++fD + +G++++ El  +++ a 
  KOO21122.1  6 LRPIFDKFDANSSGTVSTTELAEMCK-AI 33
                5669******************9998.65 PP

  == domain 2  score: -0.1 bits;  conditional E-value: 0.78
   EF-hand_6 17 idaeElrkalr 27
                +++eEl+++ +
  KOO21122.1 37 LTPEELQAIVN 47
                799****9975 PP

  == domain 3  score: 14.3 bits;  conditional E-value: 1.9e-05
   EF-hand_6  2 lreaFklfDkdgdGkidaeElrkal 26
                l+++ +  D d++G+id++E+++ l
  KOO21122.1 42 LQAIVNDADPDNSGEIDFNEFVATL 66
                67778888*************9866 PP

>> EF-hand_5  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.7   0.0   1.2e-06    0.0017       4      24 ..       9      29 ..       6      30 .. 0.89
   2 ?    0.4   0.0      0.34   5.1e+02      16      25 .]      37      46 ..      36      46 .. 0.82
   3 !    8.4   0.1     0.001       1.5       8      23 ..      49      64 ..      47      67 .. 0.80

  Alignments for each domain:
  == domain 1  score: 17.7 bits;  conditional E-value: 1.2e-06
                HHHHH-SS-SSCE-HHHHHHH CS
   EF-hand_5  4 tFqaiDlNgDGkIskeELktl 24
                 F+++D+N +G++s  EL ++
  KOO21122.1  9 IFDKFDANSSGTVSTTELAEM 29
                6*****************875 PP

  == domain 2  score: 0.4 bits;  conditional E-value: 0.34
                E-HHHHHHHH CS
   EF-hand_5 16 IskeELktlv 25
                +++eEL+++v
  KOO21122.1 37 LTPEELQAIV 46
                689***9865 PP

  == domain 3  score: 8.4 bits;  conditional E-value: 0.001
                H-SS-SSCE-HHHHHH CS
   EF-hand_5  8 iDlNgDGkIskeELkt 23
                +D +++G I++ E+ +
  KOO21122.1 49 ADPDNSGEIDFNEFVA 64
                6779**********54 PP

>> EF-hand_9  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.3   0.0   1.9e-08   2.8e-05       3      61 ..       9      65 ..       7      69 .. 0.91

  Alignments for each domain:
  == domain 1  score: 24.3 bits;  conditional E-value: 1.9e-08
   EF-hand_9  3 vFevcDtqktGrVpvsrlidyLravtaqdpeeseLeelakelDPdgedasvdldtflrv 61
                +F+ +D ++ G+V  ++l ++ +a + + ++e eL+   + +DPd+  +++d++ f + 
  KOO21122.1  9 IFDKFDANSSGTVSTTELAEMCKAIGMNLTPE-ELQAIVNDADPDNS-GEIDFNEFVAT 65
                799************************86555.69************.********876 PP

>> DUF5580  Family of unknown function (DUF5580)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.5   0.0     1e-07   0.00015     325     412 ..       6      93 ..       3     107 .. 0.83

  Alignments for each domain:
  == domain 1  score: 20.5 bits;  conditional E-value: 1e-07
     DUF5580 325 LnlsFrkeDrsfsGlLpppkvraiCgkhglyltlslletllnhqdlgyqdeikWqnfvelLsrassdlssdlPtgkeekevsakpvep 412
                 L+  F k D   sG+++ +++  +C+  g+ lt+  l +++n  d    +ei +++fv  L r   +  ++  + k +  ++ + ++ 
  KOO21122.1   6 LRPIFDKFDANSSGTVSTTELAEMCKAIGMNLTPEELQAIVNDADPDNSGEIDFNEFVATLVRQQKEAAANGGKPKADAATARANAAC 93 
                 666799*********************************************************9998887766655555555544445 PP

>> Frankia_peptide  Ribosomally synthesized peptide prototyped by Frankia Franean1_4349.
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   0.0   3.1e-06    0.0047      23      49 ..      26      51 ..      23      61 .. 0.81
   2 ?   -0.1   0.1      0.64   9.6e+02      49      61 ..     168     180 ..     162     181 .. 0.80

  Alignments for each domain:
  == domain 1  score: 16.9 bits;  conditional E-value: 3.1e-06
  Frankia_peptide 23 peeavkeagYdltpeElqalekadads 49
                     ++e++k+ g +ltpeElqa+   dad+
       KOO21122.1 26 LAEMCKAIGMNLTPEELQAIV-NDADP 51
                     689****************95.55555 PP

  == domain 2  score: -0.1 bits;  conditional E-value: 0.64
  Frankia_peptide  49 sleavalglderl 61 
                      +++  al+ld++l
       KOO21122.1 168 ESDLRALQLDAQL 180
                      6889999999997 PP

>> EF-hand_4  Cytoskeletal-regulatory complex EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.6   0.0   1.6e-05     0.024      24      68 ..      19      65 ..       5      69 .. 0.77

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 1.6e-05
   EF-hand_4 24 nkltgdkvapvlkn..skleedklekiwdladidedgkldfeefcia 68
                 +++  ++a + k    +l+ ++l+ i + ad d+ g++df+ef+ +
  KOO21122.1 19 GTVSTTELAEMCKAigMNLTPEELQAIVNDADPDNSGEIDFNEFVAT 65
                5566666666666522578899**********************976 PP

>> EF-hand_11  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   0.0   4.1e-05     0.062      26      89 ..      10      73 ..       5      89 .. 0.86

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 4.1e-05
                HHHH-TT-SSEE-HHHHHHHHHHHT----HHHHHHHHHTS-B-TTS-EEHHHHHHHHCS-.--- CS
  EF-hand_11 26 fenfdtlksntvsreefraictrrvqiltdeqfdrlwselpvnakgrlkyqdflsklsiervaa 89
                f++fd+  s tvs  e+  +c+     lt e+++ + ++   +  g + +++f++ l  ++  a
  KOO21122.1 10 FDKFDANSSGTVSTTELAEMCKAIGMNLTPEELQAIVNDADPDNSGEIDFNEFVATLVRQQKEA 73
                999*******************99999*************99************9998765443 PP

>> SPARC_Ca_bdg  Secreted protein acidic and rich in cysteine Ca binding region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   7.8e-05      0.12      60     111 ..      10      63 ..       2      65 .. 0.83

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 7.8e-05
  SPARC_Ca_bdg  60 FsklDtnsdkvlsksELaplraplvkl..ehCikpflescDadkdkkislkEwc 111
                   F+k+D ns +++s++ELa++ + +  +   +  ++ ++ +D d+ ++i+ +E++
    KOO21122.1  10 FDKFDANSSGTVSTTELAEMCKAIGMNltPEELQAIVNDADPDNSGEIDFNEFV 63 
                   99****************99876533211345899*****************97 PP

>> DUF1456  Protein of unknown function (DUF1456)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0    0.0001      0.15      15      49 ..      22      56 ..      20      68 .. 0.85

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 0.0001
     DUF1456 15 kdedmveifklggvevtkeelsalLkkedeegyee 49
                +++++ e++k+ g+++t+eel+a+    d ++  e
  KOO21122.1 22 STTELAEMCKAIGMNLTPEELQAIVNDADPDNSGE 56
                7899********************99987776555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (203 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       586  (0.0326845); expected 358.6 (0.02)
Passed bias filter:                      448  (0.0249875); expected 358.6 (0.02)
Passed Vit filter:                        50  (0.00278878); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.40u 0.22s 00:00:00.62 Elapsed: 00:00:00.37
# Mc/sec: 1627.09
//
Query:       KOO21123.1  [L=290]
Description: hypothetical protein Ctob_001983 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
     0.0087   16.1   0.5       0.56   10.3   0.3    3.1  2  Arm       Armadillo/beta-catenin-like repeat


Domain annotation for each model (and alignments):
>> Arm  Armadillo/beta-catenin-like repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.3   0.3   3.1e-05      0.56      25      40 ..      79      94 ..      74      95 .. 0.85
   2 ?    2.2   0.0     0.011     2e+02      10      22 ..     216     228 ..     208     234 .. 0.78

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 3.1e-05
                SHHHHHHHHHHHHHHT CS
         Arm 25 deevqeeAawALsNLa 40
                +  +qe ++wA+ NL+
  KOO21123.1 79 SALLQEGCCWAMHNLC 94
                6678***********9 PP

  == domain 2  score: 2.2 bits;  conditional E-value: 0.011
                 HTTHHHHHHHHTT CS
         Arm  10 eaGavppLvrLLs 22 
                  +G++p+ v+ L+
  KOO21123.1 216 AHGVIPAIVNVLR 228
                 68********998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (290 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       416  (0.0232026); expected 358.6 (0.02)
Passed bias filter:                      338  (0.0188521); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.22s 00:00:00.61 Elapsed: 00:00:00.34
# Mc/sec: 2522.38
//
Query:       KOO21124.1  [L=307]
Description: hypothetical protein Ctob_005689 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    7.2e-06   26.9   7.8      0.007   17.4   0.2    2.8  2  PRKCSH    Glucosidase II beta subunit-like protein
     0.0034   17.1   0.1      0.011   15.4   0.1    1.8  2  PRKCSH_1  Glucosidase II beta subunit-like protein


Domain annotation for each model (and alignments):
>> PRKCSH  Glucosidase II beta subunit-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.4   2.9   5.8e-05      0.52       1      19 [.     100     118 ..     100     159 .. 0.92
   2 !   17.4   0.2   7.8e-07     0.007       1      20 [.     226     245 ..     226     258 .. 0.92

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 5.8e-05
                 X-EEEEEETTEEEEEETTT CS
      PRKCSH   1 gkCvsskegwwtYelCygk 19 
                 g+C+   +g+wtYe+C+ k
  KOO21124.1 100 GTCYLMRVGYWTYEVCPWK 118
                 689*************977 PP

  == domain 2  score: 17.4 bits;  conditional E-value: 7.8e-07
                 X-EEEEEETTEEEEEETTTE CS
      PRKCSH   1 gkCvsskegwwtYelCygkk 20 
                 g+C+s   ++wtYe+C+g +
  KOO21124.1 226 GRCFSMVRDYWTYEFCPGAQ 245
                 68***************976 PP

>> PRKCSH_1  Glucosidase II beta subunit-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.0      0.31   2.7e+03      38      56 ..      97     115 ..      94     122 .. 0.85
   2 !   15.4   0.1   1.2e-06     0.011      89     129 ..     249     292 ..     232     305 .. 0.81

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 0.31
                 TTTT-EEEEEETTEEEEEE CS
    PRKCSH_1  38 alegrevkekigdYeYkvv 56 
                  leg++   ++g ++Y+v+
  KOO21124.1  97 PLEGTCYLMRVGYWTYEVC 115
                 58999999*********98 PP

  == domain 2  score: 15.4 bits;  conditional E-value: 1.2e-06
                 TS.SC-EEEEEEEE-SS-E..EEEEEEEETTEEEEEEEEGGG-- CS
    PRKCSH_1  89 nG.PvRsaiveveCGdene..lvsvseaekCeYllkvkspaaCs 129
                 nG  +R+ +v+v+C ++ne  l++v e+   +Y ++  sp +C+
  KOO21124.1 249 NGtANRRVQVRVRCSTKNEhsLIAVDEPAMHDYVMVFSSPLGCE 292
                 6624799*******9887555**********************4 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (307 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       914  (0.0509789); expected 358.6 (0.02)
Passed bias filter:                      487  (0.0271627); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.46u 0.27s 00:00:00.73 Elapsed: 00:00:00.41
# Mc/sec: 2257.40
//
Query:       KOO21125.1  [L=291]
Description: hypothetical protein Ctob_005688 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    8.8e-10   38.3   3.4    5.7e-06   26.2   0.2    3.9  4  Arm           Armadillo/beta-catenin-like repeat
    1.1e-08   35.4   0.1    2.7e-08   34.2   0.1    1.7  2  EF-hand_7     EF-hand domain pair
    1.9e-07   30.1   0.1     0.0066   15.9   0.0    2.6  2  EF-hand_1     EF hand
    4.7e-06   26.1   0.1     0.0047   16.8   0.0    2.5  2  EF-hand_6     EF-hand domain
    9.5e-05   22.2   0.6       0.17   11.8   0.1    2.6  2  EF-hand_8     EF-hand domain pair
    0.00015   21.1   0.1      0.052   13.1   0.0    2.6  2  EF-hand_5     EF hand
     0.0057   16.9   0.1      0.011   16.1   0.1    1.4  1  EF-hand_9     EF-hand domain
     0.0068   16.7   0.4      0.012   15.9   0.4    1.3  1  SPARC_Ca_bdg  Secreted protein acidic and rich in cysteine Ca
  ------ inclusion threshold ------
      0.065   13.8   3.4        4.1    8.0   1.1    3.7  3  HEAT_EZ       HEAT-like repeat
       0.09   12.6   0.0       0.23   11.2   0.0    1.7  1  Imm48         Immunity protein 48


Domain annotation for each model (and alignments):
>> Arm  Armadillo/beta-catenin-like repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.1   0.1     0.014        25      29      41 .]      15      27 ..       7      27 .. 0.88
   2 !   26.2   0.2   3.2e-09   5.7e-06       7      40 ..      35      68 ..      31      69 .. 0.94
   3 ?   -1.9   0.1       2.2     4e+03      31      41 .]     101     111 ..      99     111 .. 0.84
   4 ?    5.1   0.0     0.014        25       3      24 ..     115     136 ..     113     142 .. 0.80

  Alignments for each domain:
  == domain 1  score: 5.1 bits;  conditional E-value: 0.014
                HHHHHHHHHHHTT CS
         Arm 29 qeeAawALsNLaa 41
                +e+Aa+AL+ +++
  KOO21125.1 15 KEAAAGALWSMCS 27
                79********996 PP

  == domain 2  score: 26.2 bits;  conditional E-value: 3.2e-09
                HHHHTTHHHHHHHHTTTSSHHHHHHHHHHHHHHT CS
         Arm  7 avieaGavppLvrLLssedeevqeeAawALsNLa 40
                av + G++ pLv LL s + + q++Aa+AL+ La
  KOO21125.1 35 AVADEGGIAPLVMLLGSSSNTAQKQAAGALASLA 68
                799***************************9997 PP

  == domain 3  score: -1.9 bits;  conditional E-value: 2.2
                 HHHHHHHHHTT CS
         Arm  31 eAawALsNLaa 41 
                  Aa+A+s La+
  KOO21125.1 101 KAARAVSRLAR 111
                 69*****9996 PP

  == domain 4  score: 5.1 bits;  conditional E-value: 0.014
                 HHHHHHHHTTHHHHHHHHTTTS CS
         Arm   3 enkdavieaGavppLvrLLsse 24 
                  n  a+ +aG+++ L+++ +++
  KOO21125.1 115 SNQYALKRAGGIQKLIEMADDG 136
                 5778999*********998844 PP

>> EF-hand_7  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.0         7   1.3e+04      46      56 ..     126     136 ..     108     140 .. 0.71
   2 !   34.2   0.1   1.5e-11   2.7e-08       5      67 ..     181     238 ..     177     242 .. 0.93

  Alignments for each domain:
  == domain 1  score: -3.2 bits;  conditional E-value: 7
   EF-hand_7  46 lellfkefDtd 56 
                 +++l+++ D  
  KOO21125.1 126 IQKLIEMADDG 136
                 78888888765 PP

  == domain 2  score: 34.2 bits;  conditional E-value: 1.5e-11
   EF-hand_7   5 keaFkelDtdgdgyldkeellrllrkifqgagegsklsdeelellfkefDtdkdGvisfdEFl 67 
                  +aF  +D+d dg+++++e++  l+k     ++ +++s+  ++ + + +D+++dG +  +EF 
  KOO21125.1 181 AQAFSTIDKDCDGSISVTEIMATLHK-----DTLEEVSEADIRSICDRVDQSGDGDLQIQEFT 238
                 579****************9998888.....*******************************6 PP

>> EF-hand_1  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.0   3.7e-06    0.0066       4      27 ..     182     205 ..     179     207 .. 0.88
   2 !   11.7   0.1   8.1e-05      0.14       1      27 [.     216     242 ..     216     244 .. 0.91

  Alignments for each domain:
  == domain 1  score: 15.9 bits;  conditional E-value: 3.7e-06
                 HHHHHHTTTSSSEEEHHHHHHHHH CS
   EF-hand_1   4 eiFrefDkDgdGkIdfeEfkellk 27 
                 ++F+ +DkD dG I+  E ++ l 
  KOO21125.1 182 QAFSTIDKDCDGSISVTEIMATLH 205
                 79****************998765 PP

  == domain 2  score: 11.7 bits;  conditional E-value: 8.1e-05
                 HHHHHHHHHTTTSSSEEEHHHHHHHHH CS
   EF-hand_1   1 elkeiFrefDkDgdGkIdfeEfkellk 27 
                 +++ i + +D+ gdG + ++Ef  l+k
  KOO21125.1 216 DIRSICDRVDQSGDGDLQIQEFTLLWK 242
                 588999****************99887 PP

>> EF-hand_6  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   0.0   2.6e-06    0.0047       4      28 ..     182     206 ..     179     212 .. 0.90
   2 !    6.8   0.0    0.0041       7.4       2      22 ..     217     237 ..     216     242 .. 0.89

  Alignments for each domain:
  == domain 1  score: 16.8 bits;  conditional E-value: 2.6e-06
   EF-hand_6   4 eaFklfDkdgdGkidaeElrkalrk 28 
                 +aF  +Dkd dG+i+  E+++ l k
  KOO21125.1 182 QAFSTIDKDCDGSISVTEIMATLHK 206
                 79******************99974 PP

  == domain 2  score: 6.8 bits;  conditional E-value: 0.0041
   EF-hand_6   2 lreaFklfDkdgdGkidaeEl 22 
                 +r++ +  D++gdG + ++E+
  KOO21125.1 217 IRSICDRVDQSGDGDLQIQEF 237
                 78899999************9 PP

>> EF-hand_8  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.8   0.1   9.4e-05      0.17      32      50 ..     184     202 ..     182     206 .. 0.91
   2 !   11.0   0.1   0.00016      0.28      12      48 ..     199     237 ..     198     243 .. 0.85

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 9.4e-05
   EF-hand_8  32 frefDtdgdGkisfeEFcv 50 
                 f+++D d+dG is +E ++
  KOO21125.1 184 FSTIDKDCDGSISVTEIMA 202
                 899*************987 PP

  == domain 2  score: 11.0 bits;  conditional E-value: 0.00016
   EF-hand_8  12 rilrilglkk..glseeevdilfrefDtdgdGkisfeEF 48 
                 +i+++l++     +se +++++ +++D+ gdG +   EF
  KOO21125.1 199 EIMATLHKDTleEVSEADIRSICDRVDQSGDGDLQIQEF 237
                 6888888666999*******************9988888 PP

>> EF-hand_5  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.1   0.0   2.9e-05     0.052       4      22 ..     183     201 ..     181     205 .. 0.86
   2 !    5.3   0.1    0.0086        15       7      22 ..     223     238 ..     222     241 .. 0.86

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 2.9e-05
                 HHHHH-SS-SSCE-HHHHH CS
   EF-hand_5   4 tFqaiDlNgDGkIskeELk 22 
                 +F+ iD++ DG Is+ E +
  KOO21125.1 183 AFSTIDKDCDGSISVTEIM 201
                 5***************975 PP

  == domain 2  score: 5.3 bits;  conditional E-value: 0.0086
                 HH-SS-SSCE-HHHHH CS
   EF-hand_5   7 aiDlNgDGkIskeELk 22 
                 ++D  gDG + ++E+ 
  KOO21125.1 223 RVDQSGDGDLQIQEFT 238
                 68999*********96 PP

>> EF-hand_9  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.1   5.9e-06     0.011       3      57 ..     183     236 ..     181     243 .. 0.89

  Alignments for each domain:
  == domain 1  score: 16.1 bits;  conditional E-value: 5.9e-06
   EF-hand_9   3 vFevcDtqktGrVpvsrlidyLravtaqdpeeseLeelakelDPdgedasvdldt 57 
                  F+  D ++ G + v+++++ L + t ++ +e+++ + +  +D  g  + +++  
  KOO21125.1 183 AFSTIDKDCDGSISVTEIMATLHKDTLEEVSEADIRSICDRVDQSGD-GDLQIQE 236
                 5999***************************************9887.5555555 PP

>> SPARC_Ca_bdg  Secreted protein acidic and rich in cysteine Ca binding region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.4   6.6e-06     0.012       8     111 ..     131     238 ..     128     239 .. 0.76

  Alignments for each domain:
  == domain 1  score: 15.9 bits;  conditional E-value: 6.6e-06
  SPARC_Ca_bdg   8 elaelpeRlrdWlknlleelkereeekehleelekkee.eknlkeckepvawkFsklDtnsdkvlsksELap.lrap.lvk.lehCikpflescDad 100
                   e+a+ +++ +d lk    el+  +e +++ +++++ ++ +++   +k ++a  Fs++D++ d+++s +E+ + l+++ l +  e  i+   ++ D+ 
    KOO21125.1 131 EMADDGKKSKDFLKRKSDELNAAAEASTAAMKEMHFKFsKQSGLDVKMTAAQAFSTIDKDCDGSISVTEIMAtLHKDtLEEvSEADIRSICDRVDQS 227
                   566777888999999999999998888777776666550555667899999******************9761444313322466688888889999 PP

  SPARC_Ca_bdg 101 kdkkislkEwc 111
                    d++++ +E++
    KOO21125.1 228 GDGDLQIQEFT 238
                   9******9996 PP

>> HEAT_EZ  HEAT-like repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.0   1.1    0.0023       4.1      27      55 .]      39      67 ..      12      67 .. 0.73
   2 ?    2.2   0.1      0.16   2.8e+02      30      55 .]      83     109 ..      81     109 .. 0.85
   3 ?    0.5   0.0      0.52   9.4e+02      40      55 .]     172     187 ..     167     187 .. 0.80

  Alignments for each domain:
  == domain 1  score: 8.0 bits;  conditional E-value: 0.0023
     HEAT_EZ 27 peilpaLlalLnddsdeVRaaAagaLgnl 55
                +  +++L+ lL ++s + +++AagaL+ l
  KOO21125.1 39 EGGIAPLVMLLGSSSNTAQKQAAGALASL 67
                456899********************875 PP

  == domain 2  score: 2.2 bits;  conditional E-value: 0.16
     HEAT_EZ  30 lpaLlalLnddsdeV.RaaAagaLgnl 55 
                 + +L +   dds++   ++Aa+a ++l
  KOO21125.1  83 IELLTNSVADDSPLYaAEKAARAVSRL 109
                 6788899999999667*******9987 PP

  == domain 3  score: 0.5 bits;  conditional E-value: 0.52
     HEAT_EZ  40 dsdeVRaaAagaLgnl 55 
                 +  +V+ +Aa a++ +
  KOO21125.1 172 SGLDVKMTAAQAFSTI 187
                 55689*******9975 PP

>> Imm48  Immunity protein 48
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   0.00013      0.23      35      92 ..      62     120 ..      57     144 .. 0.80

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00013
       Imm48  35 Gvlnalaleesispidiqavmieilieklgy.seeeaaelaqfvIeaTdkefhptlyai 92 
                 G l  lal+++++ ++i ++mie+l++ +   s+  aae+a  ++    +++ + +ya+
  KOO21125.1  62 GALASLALNNDVNETKISVMMIELLTNSVADdSPLYAAEKAARAVSRLARAHSSNQYAL 120
                 899***********************998641567788888888777777777777775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (291 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       807  (0.0450109); expected 358.6 (0.02)
Passed bias filter:                      478  (0.0266607); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.43u 0.24s 00:00:00.67 Elapsed: 00:00:00.38
# Mc/sec: 2324.72
//
Query:       KOO21126.1  [L=382]
Description: hypothetical protein Ctob_005687 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (382 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       332  (0.0185175); expected 358.6 (0.02)
Passed bias filter:                      173  (0.00964917); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.41u 0.22s 00:00:00.63 Elapsed: 00:00:00.36
# Mc/sec: 3165.53
//
Query:       KOO21127.1  [L=1315]
Description: tetratricopeptide repeat domain containing protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    5.6e-22   75.6   2.7    2.4e-06   26.7   0.0    4.7  4  EF-hand_1     EF hand
    1.4e-19   70.3   2.8    4.1e-09   36.8   0.5    2.7  2  EF-hand_7     EF-hand domain pair
    7.8e-19   65.9   1.4    0.00032   20.4   0.0    4.7  4  EF-hand_6     EF-hand domain
    2.5e-12   47.0   0.0    1.7e-11   44.3   0.0    2.5  2  DUF4062       Domain of unknown function (DUF4062)
    7.1e-12   44.3   2.0    0.00018   20.8   0.0    4.3  4  EF-hand_5     EF hand
    7.4e-10   38.5   3.9    8.4e-06   25.5   0.0    3.5  3  EF-hand_8     EF-hand domain pair
    2.5e-08   34.2   0.2     0.0017   18.6   0.0    2.7  2  SPARC_Ca_bdg  Secreted protein acidic and rich in cysteine Ca
      1e-06   29.0   0.4    6.8e-05   23.1   0.1    3.9  4  TPR_12        Tetratricopeptide repeat
      3e-06   27.0   5.4     0.0011   18.8   0.4    3.0  3  EF-hand_10    EF hand
    1.2e-05   25.6   0.0    4.1e-05   23.9   0.0    1.9  1  AAA_22        AAA domain
     0.0001   22.2   0.0    0.00023   21.1   0.0    1.6  1  NACHT         NACHT domain
    0.00048   20.5   0.0     0.0019   18.6   0.0    2.1  1  AAA_16        AAA ATPase domain
     0.0034   16.9   0.0     0.0065   16.0   0.0    1.3  1  AAA_7         P-loop containing dynein motor region
  ------ inclusion threshold ------
       0.11   12.8   1.0         43    4.7   0.0    4.2  3  TPR_8         Tetratricopeptide repeat
       0.14   12.5   0.2        4.1    7.8   0.0    2.9  3  EF-hand_9     EF-hand domain
       0.85   10.4   0.0       0.85   10.4   0.0    3.4  2  LZ_Tnp_IS66   Transposase C of IS166 homeodomain
        2.6    8.4   4.2        1.4    9.3   1.3    2.0  2  CCDC53        Subunit CCDC53 of WASH complex


Domain annotation for each model (and alignments):
>> EF-hand_1  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.4   0.0     1e-06    0.0011       5      29 .]       3      27 ..       1      27 [. 0.90
   2 !   16.5   0.0   4.1e-06    0.0043       1      25 [.      35      59 ..      35      62 .. 0.93
   3 !   26.7   0.0   2.2e-09   2.4e-06       2      28 ..      70      96 ..      69      97 .. 0.91
   4 !   10.7   0.2   0.00028       0.3       6      28 ..     110     132 ..     105     133 .. 0.91

  Alignments for each domain:
  == domain 1  score: 18.4 bits;  conditional E-value: 1e-06
                HHHHHTTTSSSEEEHHHHHHHHHHH CS
   EF-hand_1  5 iFrefDkDgdGkIdfeEfkellkkl 29
                +F + DkDg+G ++++Efk+++++l
  KOO21127.1  3 AFGLSDKDGSGELSRDEFKSVIRRL 27
                78899****************9975 PP

  == domain 2  score: 16.5 bits;  conditional E-value: 4.1e-06
                HHHHHHHHHTTTSSSEEEHHHHHHH CS
   EF-hand_1  1 elkeiFrefDkDgdGkIdfeEfkel 25
                el ei  e D +gdG ++ +Ef+e+
  KOO21127.1 35 ELSEIYHECDPNGDGVVTVKEFLEC 59
                6889******************986 PP

  == domain 3  score: 26.7 bits;  conditional E-value: 2.2e-09
                HHHHHHHHTTTSSSEEEHHHHHHHHHH CS
   EF-hand_1  2 lkeiFrefDkDgdGkIdfeEfkellkk 28
                + ++F+ +DkDg+G ++feE+k+++ +
  KOO21127.1 70 IMRAFQRYDKDGNGALNFEELKTVMLS 96
                679*********************965 PP

  == domain 4  score: 10.7 bits;  conditional E-value: 0.00028
                 HHHHTTTSSSEEEHHHHHHHHHH CS
   EF-hand_1   6 FrefDkDgdGkIdfeEfkellkk 28 
                 F+e D  +dGk++  Ef +++++
  KOO21127.1 110 FNECDSRKDGKVTGVEFNDFMAR 132
                 9********************86 PP

>> EF-hand_7  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.9   0.1   6.1e-11   6.5e-08       7      68 ..       3      58 ..       1      59 [. 0.95
   2 !   36.8   0.5   3.8e-12   4.1e-09       3      70 ..      69     130 ..      67     131 .. 0.95

  Alignments for each domain:
  == domain 1  score: 32.9 bits;  conditional E-value: 6.1e-11
   EF-hand_7  7 aFkelDtdgdgyldkeellrllrkifqgagegsklsdeelellfkefDtdkdGvisfdEFlk 68
                aF + D+dg+g l+++e+++++r      + + +l++ el ++ +e D ++dGv++  EFl+
  KOO21127.1  3 AFGLSDKDGSGELSRDEFKSVIR------RLNYDLTESELSEIYHECDPNGDGVVTVKEFLE 58
                68888******************......99*****************************86 PP

  == domain 2  score: 36.8 bits;  conditional E-value: 3.8e-12
   EF-hand_7   3 klkeaFkelDtdgdgyldkeellrllrkifqgagegsklsdeelellfkefDtdkdGvisfdEFlkly 70 
                 ++++aF+ +D+dg+g l+ eel+ ++       + +s+l+d  +   f+e D++kdG+++  EF  ++
  KOO21127.1  69 AIMRAFQRYDKDGNGALNFEELKTVML------SLNSELTDSDMLSYFNECDSRKDGKVTGVEFNDFM 130
                 799********************8888......9*******99**********************998 PP

>> EF-hand_6  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.1   0.1   1.7e-06    0.0018       4      28 ..       2      26 ..       1      31 [. 0.91
   2 !   10.7   0.0   0.00038       0.4       2      24 ..      36      58 ..      35      59 .. 0.88
   3 !   20.4   0.0   3.1e-07   0.00032       2      26 ..      70      94 ..      69      98 .. 0.90
   4 !   12.0   0.1   0.00015      0.16       2      27 ..     106     131 ..     105     141 .. 0.90

  Alignments for each domain:
  == domain 1  score: 18.1 bits;  conditional E-value: 1.7e-06
   EF-hand_6  4 eaFklfDkdgdGkidaeElrkalrk 28
                +aF l Dkdg+G+++++E+++++r+
  KOO21127.1  2 AAFGLSDKDGSGELSRDEFKSVIRR 26
                6999*******************94 PP

  == domain 2  score: 10.7 bits;  conditional E-value: 0.00038
   EF-hand_6  2 lreaFklfDkdgdGkidaeElrk 24
                l e++++ D +gdG ++ +E+  
  KOO21127.1 36 LSEIYHECDPNGDGVVTVKEFLE 58
                668999***************75 PP

  == domain 3  score: 20.4 bits;  conditional E-value: 3.1e-07
   EF-hand_6  2 lreaFklfDkdgdGkidaeElrkal 26
                +++aF+ +Dkdg+G +++eEl+ ++
  KOO21127.1 70 IMRAFQRYDKDGNGALNFEELKTVM 94
                689*******************988 PP

  == domain 4  score: 12.0 bits;  conditional E-value: 0.00015
   EF-hand_6   2 lreaFklfDkdgdGkidaeElrkalr 27 
                 + + F++ D  +dGk++  E+ +++ 
  KOO21127.1 106 MLSYFNECDSRKDGKVTGVEFNDFMA 131
                 6789*******************996 PP

>> DUF4062  Domain of unknown function (DUF4062)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.3   0.0   1.6e-14   1.7e-11       1      72 [.     199     284 ..     199     311 .. 0.81
   2 ?   -2.4   0.0       6.3   6.7e+03      43      76 ..     718     754 ..     690     757 .. 0.70

  Alignments for each domain:
  == domain 1  score: 44.3 bits;  conditional E-value: 1.6e-14
     DUF4062   1 rvFiSStfrdlkeeRealieallelglep...............vgmee.......faardqsqlelcleevdecdifililgerYGsipeksg 72 
                 +vF+SStfrd+++eR+   +        p               v   +       ++a++   +++cle + ++++f+ +lg rYG++p+k++
  KOO21127.1 199 QVFLSSTFRDMNAERAIFTKRYA-----PslrllaksrglfitfV---DlrwgvtvEQATSGAVVSICLERLASSRYFVNFLGLRYGWMPAKED 284
                 7****************999999.....65666778888775440...2556666689*******************************55443 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 6.3
     DUF4062  43 lelcl...eevdecdifililgerYGsipeksgiSyt 76 
                 l  cl   + v  +d+++  + +++G +  +++ Sy 
  KOO21127.1 718 LRHCLaqkDMVALADMVLQRIEDQFGALLVQRTFSYL 754
                 4455544477888999999999999998777777775 PP

>> EF-hand_5  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.5   0.1   3.6e-05     0.038       9      24 ..       8      23 ..       2      24 .. 0.87
   2 !    5.9   0.0    0.0088       9.3      11      23 ..      46      58 ..      44      59 .. 0.88
   3 !   20.8   0.0   1.7e-07   0.00018       2      25 .]      72      94 ..      70      94 .. 0.92
   4 ?   -1.8   0.0       2.5   2.6e+03      12      25 .]     117     130 ..     109     130 .. 0.79

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 3.6e-05
                -SS-SSCE-HHHHHHH CS
   EF-hand_5  9 DlNgDGkIskeELktl 24
                D++g+G +s++E+k +
  KOO21127.1  8 DKDGSGELSRDEFKSV 23
                *************986 PP

  == domain 2  score: 5.9 bits;  conditional E-value: 0.0088
                S-SSCE-HHHHHH CS
   EF-hand_5 11 NgDGkIskeELkt 23
                NgDG +++ E+ +
  KOO21127.1 46 NGDGVVTVKEFLE 58
                9*********965 PP

  == domain 3  score: 20.8 bits;  conditional E-value: 1.7e-07
                HHHHHHH-SS-SSCE-HHHHHHHH CS
   EF-hand_5  2 kdtFqaiDlNgDGkIskeELktlv 25
                ++ Fq+ D++g G +++eELkt++
  KOO21127.1 72 RA-FQRYDKDGNGALNFEELKTVM 94
                45.*******************87 PP

  == domain 4  score: -1.8 bits;  conditional E-value: 2.5
                 -SSCE-HHHHHHHH CS
   EF-hand_5  12 gDGkIskeELktlv 25 
                 +DGk++  E+  ++
  KOO21127.1 117 KDGKVTGVEFNDFM 130
                 7****988887765 PP

>> EF-hand_8  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.5   0.0     8e-09   8.4e-06       2      51 ..      12      59 ..      11      59 .. 0.95
   2 !    7.7   0.1    0.0029         3      32      53 ..      74      95 ..      65      97 .. 0.85
   3 !   10.0   0.9   0.00057       0.6       3      54 ..      83     132 ..      81     133 .. 0.85

  Alignments for each domain:
  == domain 1  score: 25.5 bits;  conditional E-value: 8e-09
   EF-hand_8  2 kgkItreelrrilrilglkkglseeevdilfrefDtdgdGkisfeEFcvl 51
                +g+++r+e+++ +r l +   l+e+e+ ++  e D +gdG+++ +EF+++
  KOO21127.1 12 SGELSRDEFKSVIRRLNYD--LTESELSEIYHECDPNGDGVVTVKEFLEC 59
                79*********99999999..**************************976 PP

  == domain 2  score: 7.7 bits;  conditional E-value: 0.0029
   EF-hand_8 32 frefDtdgdGkisfeEFcvlle 53
                f + D dg+G+++feE   ++ 
  KOO21127.1 74 FQRYDKDGNGALNFEELKTVML 95
                7778************998885 PP

  == domain 3  score: 10.0 bits;  conditional E-value: 0.00057
   EF-hand_8   3 gkItreelrril.rilglkkglseeevdilfrefDtdgdGkisfeEFcvller 54 
                 g + +eel++ + + l  +  l+++++ + f+e D  +dGk++  EF ++++r
  KOO21127.1  83 GALNFEELKTVMlS-LNSE--LTDSDMLSYFNECDSRKDGKVTGVEFNDFMAR 132
                 66779*****8855.4666..**********************9999888875 PP

>> SPARC_Ca_bdg  Secreted protein acidic and rich in cysteine Ca binding region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.7   0.0   0.00011      0.12      60     113 .]       4      59 ..       2      59 .. 0.86
   2 !   18.6   0.0   1.6e-06    0.0017      56     110 ..      70     126 ..      61     128 .. 0.84

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 0.00011
  SPARC_Ca_bdg  60 FsklDtnsdkvlsksELaplrapl..vklehCikpflescDadkdkkislkEwceC 113
                   F   D++  + ls+ E +++   l  + +e+  ++  ++cD + d+ ++ kE+ eC
    KOO21127.1   4 FGLSDKDGSGELSRDEFKSVIRRLnyDLTESELSEIYHECDPNGDGVVTVKEFLEC 59 
                   555688889999999*99997666336789999**********************9 PP

  == domain 2  score: 18.6 bits;  conditional E-value: 1.6e-06
  SPARC_Ca_bdg  56 vawkFsklDtnsdkvlsksELaplraplvk..lehCikpflescDadkdkkislkEw 110
                   +   F++ D++ ++ l+ +EL+ + ++l +  +++ +  ++++cD+ kd+k++  E+
    KOO21127.1  70 IMRAFQRYDKDGNGALNFEELKTVMLSLNSelTDSDMLSYFNECDSRKDGKVTGVEF 126
                   4456*******************9999865226888999**************9998 PP

>> TPR_12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.1   0.1   6.5e-08   6.8e-05       3      75 ..     968    1040 ..     966    1041 .. 0.95
   2 !   13.6   0.0   5.7e-05     0.061       4      76 ..    1053    1127 ..    1050    1128 .. 0.88
   3 ?   -1.2   0.1       2.4   2.6e+03       9      31 ..    1150    1172 ..    1143    1189 .. 0.65
   4 ?   -2.6   0.5       6.5   6.9e+03      62      76 ..    1223    1237 ..    1218    1250 .. 0.68

  Alignments for each domain:
  == domain 1  score: 23.1 bits;  conditional E-value: 6.5e-08
      TPR_12    3 atalnnlaavlrrlgrydeAlellekaleiarrllGpdhpltattlrnLgrlyralgryeeAlelleealaia 75  
                  a+++ + +a+l rl +y+ A+ l +++++i r+ +G+ ++ +a+ lr L+ +++++gr e+A + l +a+ i+
  KOO21127.1  968 AKIYGQAGAFLVRLMQYEGAIILQQEVVDIDRSRFGTMSERVAEGLRQLSATQFLMGRIEAAMSSLYRAIGIY 1040
                  789999**********************************************************999998776 PP

  == domain 2  score: 13.6 bits;  conditional E-value: 5.7e-05
      TPR_12    4 talnnlaavlrrlgrydeAlellekaleiarrllGpdhpltattlrnLgrlyral..gryeeAlelleealaiae 76  
                   +l ++  v ++ ++ + A   +  al i+++++G d p +a +l+ L+ l  ++  +++++A+++ +++l++++
  KOO21127.1 1053 ETLFEMSRVALYTEDIAGAKNKCLLALHIFQKVYGLDDPRLAPVLNRLACLMIEMgpEEQDDAVNHATRSLKLCT 1127
                  5555778888899999999999999***************************766578*************9986 PP

  == domain 3  score: -1.2 bits;  conditional E-value: 2.4
      TPR_12    9 laavlrrlgrydeAlellekale 31  
                  ++a +++ gr  eA++ le a++
  KOO21127.1 1150 VGANHFKCGRIGEACRVLEDARA 1172
                  56666777777777777776654 PP

  == domain 4  score: -2.6 bits;  conditional E-value: 6.5
      TPR_12   62 eeAlelleealaiae 76  
                  ++A+++ ++a+a ae
  KOO21127.1 1223 AAAEAAARKAYATAE 1237
                  566666666666554 PP

>> EF-hand_10  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.7   0.1   0.00071      0.75       2      43 ..      15      56 ..      14      59 .. 0.90
   2 !   18.8   0.4     1e-06    0.0011       2      47 ..      85     130 ..      84     132 .. 0.96
   3 ?   -3.0   0.0       6.5   6.8e+03      21      28 ..    1050    1057 ..    1050    1058 .. 0.87

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 0.00071
  EF-hand_10  2 msfkEvkrlLreiNievddeYAekLFkkcDkSksgrLegeEi 43
                +s +E k+ +r +N ++ ++   +++ +cD   +g    +E+
  KOO21127.1 15 LSRDEFKSVIRRLNYDLTESELSEIYHECDPNGDGVVTVKEF 56
                6889**************************999998777765 PP

  == domain 2  score: 18.8 bits;  conditional E-value: 1e-06
  EF-hand_10   2 msfkEvkrlLreiNievddeYAekLFkkcDkSksgrLegeEieeFy 47 
                 ++f+E+k+ +  +N e+ d+   + F +cD  k+g+  g E++ F+
  KOO21127.1  85 LNFEELKTVMLSLNSELTDSDMLSYFNECDSRKDGKVTGVEFNDFM 130
                 79******************************************97 PP

  == domain 3  score: -3.0 bits;  conditional E-value: 6.5
  EF-hand_10   21 eYAekLFk 28  
                  eYAe+LF 
  KOO21127.1 1050 EYAETLFE 1057
                  6******5 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.9   0.0   3.9e-08   4.1e-05       5     104 ..     498     601 ..     494     632 .. 0.66

  Alignments for each domain:
  == domain 1  score: 23.9 bits;  conditional E-value: 3.9e-08
      AAA_22   5 agilvvtGesGtGKTtllrrlleqldeeakaeeerpevv......fvtlpsst.sskdllrellralglelka......erlsseell.ealeqalrar 89 
                 +  lvv+G sGtGK+  +++ l++++        + ev       f++ ++ +  ++d+ ++l+++l++  +       er ++ e++   l++a++++
  KOO21127.1 498 RLPLVVVGNSGTGKSAAIANWLMRAE--------DQEVTgfvlphFCDSTANStHPEDIVKRLAEELKRAFNFenqiptERSDLLEMVpIWLAKACETA 588
                 5679********************96........44444111555444443334777777777777776555599955555555555534444444444 PP

      AAA_22  90 avielliiDEaqhlr 104
                   ++ ++iD ++hl 
  KOO21127.1 589 --PVTILIDGIDHLK 601
                 ..56**********4 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.1   0.0   2.2e-07   0.00023       3     158 ..     501     666 ..     499     673 .. 0.71

  Alignments for each domain:
  == domain 1  score: 21.1 bits;  conditional E-value: 2.2e-07
                 EEEEC-TTTCHHHHHHHHHHHHCTS-SCCCC-SEEEEEETTTTTTS-.......-HCHHHCCCCTS--SSS-CCHHHHCCSCCCEE..........EEE CS
       NACHT   3 vilqGeaGsGKTtLlqklalawaegklpqgafklvFflslrelsrsgna....rsladllfsqlpepaapvsevwavllelperlL..........lil 87 
                 +++ G +G GK++ ++   + + +++  +    +v+ +++ ++  s+       +la+ l + +  +++ ++e ++ lle     L          +++
  KOO21127.1 501 LVVVGNSGTGKSAAIANWLMRAEDQEVTG----FVLPHFCDSTANSTHPedivKRLAEELKRAFNFENQIPTE-RSDLLEMVPIWLakacetapvtILI 594
                 799*********98877777777666566....8999999888888766455655666555555555555555.4444444444447888888888*** PP

                 E-STT-SS-TCH.........HHHHHCTTTTT--EEEEEEECCCHHH...HCTTSSCE...EEEE--TCCHHHHH CS
       NACHT  88 DglDelvtdlgqkekqpvrtlLselirkkllpeasllltvrpralrd...leeqleea.ivlevegfsesrrkql 158
                 Dg+D l+ +  +       + L ++++ +l +++s++l++ +++      + ++ ++a + +++++++ ++ + l
  KOO21127.1 595 DGIDHLKVEYAA--DGTRLDPL-SWVPSTLHSNCSIILSTASESPAFaalVSRGWADAkHTVQLPALTGDDKQLL 666
                 *******97777..44455556.9***************999887334444444444478888988888887755 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.6   0.0   1.8e-06    0.0019      22      91 ..     497     558 ..     489     698 .. 0.70

  Alignments for each domain:
  == domain 1  score: 18.6 bits;  conditional E-value: 1.8e-06
      AAA_16  22 grpelvllsGesGvGKsslvrellralekdg..giflrgkcdqlesaipysalaqalareellrqlldeaes 91 
                 +r   ++++G+sG+GKs+ +  +l ++e+++  g++l   cd+   +++          e++++ l++e++ 
  KOO21127.1 497 PR-LPLVVVGNSGTGKSAAIANWLMRAEDQEvtGFVLPHFCDSTANSTH---------PEDIVKRLAEELKR 558
                 44.5688*****************9999996525557777777722232.........43444444444222 PP

>> AAA_7  P-loop containing dynein motor region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.0   6.2e-06    0.0065      30      88 ..     495     554 ..     489     564 .. 0.72

  Alignments for each domain:
  == domain 1  score: 16.0 bits;  conditional E-value: 6.2e-06
       AAA_7  30 lknkkpvllvGptGtGKtviikd.llkkldkekylsltinfsaqtsanqlqdiiesklek 88 
                  k + p+++vG++GtGK++ i + l+++ d+e + ++   f  +t  ++  + i ++l  
  KOO21127.1 495 AKPRLPLVVVGNSGTGKSAAIANwLMRAEDQEVTGFVLPHFCDSTANSTHPEDIVKRLAE 554
                 5667899****************7777777666666666676666655555555555555 PP

>> TPR_8  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.9   0.0      0.31   3.3e+02       1      32 [.     968     999 ..     968    1001 .. 0.92
   2 ?    4.7   0.0      0.04        43      11      31 ..    1020    1040 ..    1015    1043 .. 0.83
   3 ?    0.9   0.3      0.65   6.8e+02      15      30 ..    1173    1188 ..    1171    1189 .. 0.88

  Alignments for each domain:
  == domain 1  score: 1.9 bits;  conditional E-value: 0.31
                 CCHHHHHHHHHHHTT-HHHHHHHHHHHHHHHH CS
       TPR_8   1 aeayynlgsiylklgdyeeAkeyyekaleldp 32 
                 a++y + g  +  l +ye A+   ++++++d+
  KOO21127.1 968 AKIYGQAGAFLVRLMQYEGAIILQQEVVDIDR 999
                 6899999999999*****************98 PP

  == domain 2  score: 4.7 bits;  conditional E-value: 0.04
                  HHHTT-HHHHHHHHHHHHHHH CS
       TPR_8   11 ylklgdyeeAkeyyekaleld 31  
                   + +g++e+A++++ +a+ + 
  KOO21127.1 1020 QFLMGRIEAAMSSLYRAIGIY 1040
                  5679**************986 PP

  == domain 3  score: 0.9 bits;  conditional E-value: 0.65
                  T-HHHHHHHHHHHHHH CS
       TPR_8   15 gdyeeAkeyyekalel 30  
                  g++ +A+++++ka el
  KOO21127.1 1173 GKISNAEAALKKAEEL 1188
                  8899*********988 PP

>> EF-hand_9  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.8   0.0     0.004       4.2       4      59 ..       4      57 ..       2      60 .. 0.82
   2 ?    7.8   0.0    0.0039       4.1       3      62 ..      39      94 ..      37      97 .. 0.88
   3 ?   -0.7   0.0       1.8   1.9e+03       3      16 ..     109     122 ..     103     130 .. 0.90

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 0.004
   EF-hand_9  4 FevcDtqktGrVpvsrlidyLravtaqdpeeseLeelakelDPdgedasvdldtfl 59
                F + D +  G+    + +++ r     d +eseL e ++e DP+g  + v    fl
  KOO21127.1  4 FGLSDKDGSGELSRDEFKSVIRRLNY-DLTESELSEIYHECDPNGD-GVVTVKEFL 57
                67778888888888888888888888.899**************98.888777776 PP

  == domain 2  score: 7.8 bits;  conditional E-value: 0.0039
   EF-hand_9  3 vFevcDtqktGrVpvsrlidyLravtaqdpeeseLeelakelDPdgedasvdldtflrvm 62
                +++ cD++  G+V+v++   +L+  ++   ee+++    + +D dg+ + ++++  ++vm
  KOO21127.1 39 IYHECDPNGDGVVTVKE---FLECRGKACAEEVAIMRAFQRYDKDGN-GALNFEELKTVM 94
                7999*********9986...6777777778999*************9.999****99999 PP

  == domain 3  score: -0.7 bits;  conditional E-value: 1.8
   EF-hand_9   3 vFevcDtqktGrVp 16 
                  F+ cD  k G+V+
  KOO21127.1 109 YFNECDSRKDGKVT 122
                 6999********96 PP

>> LZ_Tnp_IS66  Transposase C of IS166 homeodomain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.2       2.8     3e+03      26      61 ..     454     495 ..     450     504 .. 0.54
   2 ?   10.4   0.0   0.00081      0.85       2      31 ..     990    1022 ..     989    1044 .. 0.79

  Alignments for each domain:
  == domain 1  score: -0.9 bits;  conditional E-value: 2.8
  LZ_Tnp_IS66  26 eQleL......aleeleaeeaeveakapkskkrkkrgRkpLp 61 
                  eQ++       ++++++a +a+++a ++++ + +k++  +  
   KOO21127.1 454 EQIDAyvraakSAATPSATPAAAAASVKPAVAGAKPTAAAVA 495
                  677776654444444555555555555566666666555444 PP

  == domain 2  score: 10.4 bits;  conditional E-value: 0.00081
  LZ_Tnp_IS66    2 LeeqlallkrklFGrsSEltardpeQleL...a 31  
                   L++++    r +FG +SE+ a+   Ql+     
   KOO21127.1  990 LQQEVVDIDRSRFGTMSERVAEGLRQLSAtqfL 1022
                   889999999*********888888888875442 PP

>> CCDC53  Subunit CCDC53 of WASH complex
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.1       4.7     5e+03      72      90 ..     464     482 ..     427     500 .. 0.52
   2 ?    9.3   1.3    0.0014       1.4      27      99 ..    1233    1311 ..    1222    1315 .] 0.70

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 4.7
      CCDC53  72 ppppppsseaaaaaaqaee 90 
                 + + +ps+++aaaaa+ ++
  KOO21127.1 464 KSAATPSATPAAAAASVKP 482
                 2222222222222221111 PP

  == domain 2  score: 9.3 bits;  conditional E-value: 0.0014
      CCDC53   27 ekrlqrleitlalLEakLs.Sipgleeveaeaaeastsddn.....aarkgppppppsseaaaaaaqaeeasqaeesae 99  
                      +r e++  lL + L+  ip+ e+++ e+a +  ++++     ++++++pp +p++++++aa++a++++++ ++++
  KOO21127.1 1233 YATAERFETRCVLLLQSLNkTIPKDEKEKDEGAGKGGTKRGsgakgSTSEAAPPASPKKTPSEAAPPASPKKTTFAKED 1311
                  5667899***********99***99999999877666666677777666666666667777777766665555544433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1315 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       832  (0.0464053); expected 358.6 (0.02)
Passed bias filter:                      626  (0.0349155); expected 358.6 (0.02)
Passed Vit filter:                        85  (0.00474092); expected 17.9 (0.001)
Passed Fwd filter:                        20  (0.00111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              17  [number of targets reported over threshold]
# CPU time: 0.91u 0.25s 00:00:01.16 Elapsed: 00:00:00.41
# Mc/sec: 9555.34
//
Query:       KOO21128.1  [L=235]
Description: ATP-dependent protease peptidase subunit [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.5e-18   67.0   0.8    4.7e-18   65.3   0.8    1.6  1  Proteasome  Proteasome subunit


Domain annotation for each model (and alignments):
>> Proteasome  Proteasome subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.3   0.8   2.6e-22   4.7e-18       3     185 ..      53     218 ..      52     222 .. 0.90

  Alignments for each domain:
  == domain 1  score: 65.3 bits;  conditional E-value: 2.6e-22
                 HS-EEEEEEETTEEEEEEEEEEEETTEEEESSSSTSEEEEETTEEEEEEESHHHHHHHHHHHHHHHHHHHHHHSSGTCHHHHHHHHHHHHHHHHHHCTT CS
  Proteasome   3 kGttvvGikgkdgvvlaadkratagskllskstveKifkiddhigvafaGlaaDartlvrraraeaqlyrlrygrpipverlvarvaaklqaytqrsgr 101
                 ++tt++ ++ ++ v l++d +++ gs++++++ ++K++k+++ ++++faG +aDa tl++r+++++q++     + ++             +++++++r
  KOO21128.1  53 RATTILSVRKEGKVFLIGDGQVSLGSQVIKPN-ARKVRKLKEGVICGFAGATADAMTLFERLEMKLQEHP----ETMRA-----------CVEMAKAWR 135
                 68*****************************9.7***********************************9....44444...........488999999 PP

                 TTTSEEEEEEEEETTTEEEEEEEETTSEEEEES.SEEEESTTHHHHHHHHHHHHSTTBSHHHHHHHHHHHHHHHHHHBTTSCSSE CS
  Proteasome 102 rpfgvslliagvdeeggpeLyqidpsGsyieek.davaiGsgseaaktalekeykedltleeavelavkalkealerdklsgkni 185
                  + +++ l a +   ++   ++++ +G++ie++  ++ iGsg  +a +a  +++  d +  +a+ + +ka+  a++ +++++kn+
  KOO21128.1 136 MDKYLRRLEAIMIVCDKDVSLTLTGTGDVIEPEkGVIGIGSGGAFASAAALALV--DVEGYSAEMIGRKAMDIASDMCVYTNKNY 218
                 9999888888888666667788999*******9788888999999999999999..**************************997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (235 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       468  (0.026103); expected 358.6 (0.02)
Passed bias filter:                      427  (0.0238162); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.27s 00:00:00.70 Elapsed: 00:00:00.42
# Mc/sec: 1698.29
//
Query:       KOO21129.1  [L=514]
Description: hypothetical protein Ctob_005690 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (514 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       415  (0.0231469); expected 358.6 (0.02)
Passed bias filter:                      389  (0.0216967); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.51u 0.23s 00:00:00.74 Elapsed: 00:00:00.39
# Mc/sec: 3954.58
//
Query:       KOO21130.1  [L=149]
Description: hypothetical protein Ctob_005691 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.067   12.6   0.0      0.087   12.2   0.0    1.1  1  T2SSK     Type II secretion system (T2SS), protein K


Domain annotation for each model (and alignments):
>> T2SSK  Type II secretion system (T2SS), protein K
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   4.9e-06     0.087     134     209 ..      40     117 ..      19     119 .. 0.82

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 4.9e-06
       T2SSK 134 edsayasleppylpanqpladvseLrlvkgvtpelyarLrPyvtvlp....ektkiNiNtasaevLaAlveglslsqaqr 209
                  ++  a+ +   ++  ++++++se+  ++g++p + ++L+P   v       ++    N ++ae + A+ + +s+ +a++
  KOO21130.1  40 SEAHRATSTAFEHA--MYMRSISEWVVLMGFSPLVERALAPGPNVFEglqiVQLDGQPNVMKAEMIVAMLSLMSVGDARA 117
                 44444444444555..99************************9999988666777789******************9985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (149 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       300  (0.0167327); expected 358.6 (0.02)
Passed bias filter:                      263  (0.014669); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.22s 00:00:00.57 Elapsed: 00:00:00.37
# Mc/sec: 1191.83
//
Query:       KOO21131.1  [L=238]
Description: DNA binding, partial [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    5.8e-14   52.0   0.0    1.3e-11   44.5   0.0    2.4  2  Myb_DNA-binding  Myb-like DNA-binding domain
     0.0004   20.2   0.1       0.49   10.3   0.0    2.5  2  Myb_DNA-bind_7   Myb DNA-binding like
    0.00045   20.4   0.1    0.00094   19.4   0.1    1.5  1  Myb_DNA-bind_6   Myb-like DNA-binding domain
  ------ inclusion threshold ------
      0.015   15.7   0.0       0.03   14.8   0.0    1.4  1  RuvA_C           RuvA, C-terminal domain
      0.035   13.5   0.1      0.051   13.0   0.1    1.1  1  ZnuA             Zinc-uptake complex component A periplasmic
       0.13   12.4   0.1       0.13   12.4   0.1    1.6  2  Bacteriocin_IIc  Bacteriocin class II with double-glycine lea


Domain annotation for each model (and alignments):
>> Myb_DNA-binding  Myb-like DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.2   0.0    0.0083        25       4      24 ..       9      29 ..       6      30 .. 0.88
   2 !   44.5   0.0   4.3e-15   1.3e-11       3      45 ..     152     196 ..     150     197 .. 0.94

  Alignments for each domain:
  == domain 1  score: 5.2 bits;  conditional E-value: 0.0083
                     SBHHHHHHHHHHHHHHTTCHH CS
  Myb_DNA-binding  4 WteeEdelLleavkkhGnrWk 24
                     + +eE  +++ea+ ++G +++
       KOO21131.1  9 FKPEEAAQFIEALDQLGADFD 29
                     679**************7765 PP

  == domain 2  score: 44.5 bits;  conditional E-value: 4.3e-15
                      SSBHHHHHHHHHHHHHHT.TCHHHHHHHHT.SS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 kWteeEdelLleavkkhG.nrWkkIaerlg.gRtekqcrsrwrny 45 
                      +W+eeE++l+l+++ k+G ++W++I++    +Rt+ q+ s+ ++y
       KOO21131.1 152 AWSEEEHKLFLQGLDKFGkGDWRSISRQCVlTRTPAQVASHAQKY 196
                      8************************997667*************9 PP

>> Myb_DNA-bind_7  Myb DNA-binding like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.2   0.0    0.0015       4.5      13      31 ..      11      29 ..       3      33 .. 0.89
   2 !   10.3   0.0   0.00016      0.49       7      33 ..     149     176 ..     142     195 .. 0.75

  Alignments for each domain:
  == domain 1  score: 7.2 bits;  conditional E-value: 0.0015
  Myb_DNA-bind_7 13 keetekFYkaLsqfGtDFs 31
                     ee  +F +aL q+G DF 
      KOO21131.1 11 PEEAAQFIEALDQLGADFD 29
                    68999*************7 PP

  == domain 2  score: 10.3 bits;  conditional E-value: 0.00016
  Myb_DNA-bind_7   7 ktkkWskeetekFYkaLsqfGt.DFsli 33 
                     +   Ws+ee ++F ++L +fG  D+  i
      KOO21131.1 149 RGVAWSEEEHKLFLQGLDKFGKgDWRSI 176
                     6679*****************6466555 PP

>> Myb_DNA-bind_6  Myb-like DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.4   0.1   3.1e-07   0.00094       1      35 [.     153     189 ..     153     195 .. 0.89

  Alignments for each domain:
  == domain 1  score: 19.4 bits;  conditional E-value: 3.1e-07
  Myb_DNA-bind_6   1 WteeEdeiLlklvekygn.dWknIaea..lnrRtpkqc 35 
                     W+eeE ++ l++  k+g+ dW++I+++  l  Rtp q+
      KOO21131.1 153 WSEEEHKLFLQGLDKFGKgDWRSISRQcvLT-RTPAQV 189
                     *****************77******995445.***998 PP

>> RuvA_C  RuvA, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.8   0.0   9.9e-06      0.03      12      36 ..       6      31 ..       6      34 .. 0.88

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 9.9e-06
                HCTS-HHHHHHHHHHHHC.-TTS-HH CS
      RuvA_C 12 aLGYkekeaekAvakvla.npgasve 36
                +LG+k++ea++ ++++++ +++ +++
  KOO21131.1  6 TLGFKPEEAAQFIEALDQlGADFDTD 31
                6****************998887776 PP

>> ZnuA  Zinc-uptake complex component A periplasmic
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.1   1.7e-05     0.051     127     195 ..      13      88 ..      10      98 .. 0.85

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 1.7e-05
                 HHHHHHHHHHHHHHHHHHHHTTSSGTEGEEEESSSTTHHHHHHTT-EEEEEESSSSS........HHHHHHHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx........xxxxxxxxxxxx RF
        ZnuA 127 naaayiekLeeldaeireelaeipeekrklvtthdafgylarayglevagiagiste........aaqiaalieeik 195
                  aa++ie L++l a++ +   +  e+ +++v  +d ++ l+++  l  +g+  +s+          +qiaa +e+i 
  KOO21131.1  13 EAAQFIEALDQLGADFDTDATSGAED-QQFVIEEDDWHWLTKQAELAHLGVLDASHLsaivggvnDEQIAACAEHIA 88 
                 799****************8877655.59********************9987777777888888777777777664 PP

>> Bacteriocin_IIc  Bacteriocin class II with double-glycine leader peptide
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.1   4.2e-05      0.13       6      32 ..      62      91 ..      57      93 .. 0.93
   2 ?   -3.6   0.4       4.4   1.3e+04      19      29 ..     114     124 ..     104     127 .. 0.47

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 4.2e-05
  Bacteriocin_IIc  6 eLdeeeLakVeGG...kcaqgtvggivgga 32
                     +Ld  +L++++GG    ++++++++i+++a
       KOO21131.1 62 VLDASHLSAIVGGvndEQIAACAEHIAACA 91
                     799************************998 PP

  == domain 2  score: -3.6 bits;  conditional E-value: 4.4
  Bacteriocin_IIc  19 kcaqgtvggiv 29 
                      k++ +++++++
       KOO21131.1 114 KDWGHRGADAA 124
                      55555555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (238 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       498  (0.0277762); expected 358.6 (0.02)
Passed bias filter:                      331  (0.0184617); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.42u 0.27s 00:00:00.69 Elapsed: 00:00:00.42
# Mc/sec: 1684.18
//
Query:       KOO21132.1  [L=394]
Description: protease precursor [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    5.5e-32  111.7   0.7      1e-31  110.8   0.7    1.5  1  Trypsin_2      Trypsin-like peptidase domain
    9.4e-16   58.3   0.0      2e-15   57.2   0.0    1.5  1  Trypsin        Trypsin
    3.1e-12   46.6   0.1    8.1e-12   45.3   0.1    1.6  1  PDZ_2          PDZ domain
    0.00062   19.6   0.6      0.015   15.1   0.2    2.8  2  PDZ_6          PDZ domain
  ------ inclusion threshold ------
      0.029   14.1   0.1      0.088   12.6   0.0    1.8  2  Peptidase_S29  Hepatitis C virus NS3 protease
      0.037   13.2   1.4       0.98    8.6   0.1    2.2  2  Peptidase_S32  Equine arteritis virus serine endopeptidase S3
       0.13   12.7   0.2        1.5    9.2   0.2    2.6  1  PDZ            PDZ domain
       0.14   10.8   1.3        1.3    7.6   0.5    2.2  2  Peptidase_S46  Peptidase S46


Domain annotation for each model (and alignments):
>> Trypsin_2  Trypsin-like peptidase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  110.8   0.7   4.7e-35     1e-31       1     150 []     104     246 ..     104     246 .. 0.96

  Alignments for each domain:
  == domain 1  score: 110.8 bits;  conditional E-value: 4.7e-35
   Trypsin_2   1 GsGflvgsdglilTnaHvvdsadgaavkaikkkveeagadgrevpakvvaadpelDlAllkvssderaglpplplgpsealkggepvyvvGyplggeks 99 
                 GsGf++++ g+i+Tn+Hv++sa+ a v     + +      ++++a++v+++p++D+A+lk+ +   +  pp+ lg+s++l++g++  ++G+p g ++ 
  KOO21132.1 104 GSGFVWDDAGHIVTNYHVIRSAEAAKV-----VLTDENGLQKRFDARLVGYNPDKDVAVLKI-DAGLSRPPPISLGSSSSLRVGQTTLAIGNPFGLDH- 195
                 9**************************.....566667778999999***************.999999999**************************. PP

   Trypsin_2 100 gsvssGivsgvve.sesaasgegesflqtdaatspGsSGGplfdsdGrvvGl 150
                  +++ G+vsg+ +  +s ++++ ++++qtdaa++pG+SGG+l+ds Gr++G+
  KOO21132.1 196 -TLTMGVVSGLGReVQSPSGRPITNVIQTDAAINPGNSGGALLDSSGRLIGM 246
                 .9*************************************************8 PP

>> Trypsin  Trypsin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.2   0.0     9e-19     2e-15      26     218 ..     103     270 ..      84     273 .. 0.80

  Alignments for each domain:
  == domain 1  score: 57.2 bits;  conditional E-value: 9e-19
                 EEEEEEEETT.EEEEEGGGTTTGGGEEEEESESBTTSCTTTEEEEEEEEEEEETTEBTTTTTTTEEEEEESSSSTSBSSBHCCBBCSTTHTTSTTTEEE CS
     Trypsin  26 lCgGslisen.wvlTAaHCvsnasdvkvvlgehnlkksegkeqklkvekvivhpnynpstldnDiallklkepvklgdtvrpiclpaassslpvgttcl 123
                 + +G++ ++   ++T+ H++++a++ kvvl++     ++g +++++ + v    +ynp++   D+a+lk+++     ++  pi+l + sssl vg   +
  KOO21132.1 103 TGSGFVWDDAgHIVTNYHVIRSAEAAKVVLTD-----ENGLQKRFDARLV----GYNPDK---DVAVLKIDAG---LSRPPPISLGS-SSSLRVG--QT 183
                 346888888889**********9999998886.....5555566776663....7***99...**********...77888******.6767888..56 PP

                 EEESSBSSTSSBSSBEEEEEEEEEEHHHHHHHTTTTSTTTEEEEESTTSSSBCTTTTTTSEEEETTTEEEEEEEEESSSSCTTS.EEEEEEGGGGH CS
     Trypsin 124 vsGwgrtkekgksdtlqevevpvvsretcksaykgkvtenmlcagakeggkdacqGDSGGPlvcsdgelvGivswgkgcakgnr.pgvytkvssyl 218
                 + ++g+++     +tl+ + v+ + re  +   ++ + +n ++++a     ++++G+SGG+l+ s+g l+G++++ ++ + +   +g++++v++++
  KOO21132.1 184 TLAIGNPFGLD--HTLTMGVVSGLGREVQSP-SGRPI-TNVIQTDA-----AINPGNSGGALLDSSGRLIGMNTAIYSPSGASAgIGFAIPVDTLK 270
                 66778887777..9************74333.34545.788*****.....*************************5555555459******9765 PP

>> PDZ_2  PDZ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.3   0.1   3.6e-15   8.1e-12       2      79 ..     286     383 ..     285     387 .. 0.88

  Alignments for each domain:
  == domain 1  score: 45.3 bits;  conditional E-value: 3.6e-15
                 ...XX------........-EEEEEE-TTSGGGGT.--T...........T-EEEEETTB--SSHHHHHHHHHTS-TT-EEEEEEEE...TTEEEEEE CS
       PDZ_2   2 ylGvsvsdeed......tggvlvvsVkeggPaakaglka...........gDvilkvdgkkvksledlislllkkkpGdtVkltvlR...dgkkktve 79 
                 ++G+s  +  +      ++gvlv +V e++ a+kagl+            gDvi++v++ +v+++ +l +++ k kpGd V+ltv+R   d++++++ 
  KOO21132.1 286 AIGISYMSYGQaralgvDRGVLVLDVPEQSSADKAGLRGsyrsrsgeiviGDVITAVNSDVVDDDIELFRAIDKFKPGDRVTLTVSRfdeDDNEQELR 383
                 6777766666667777789********************************************************************87766666665 PP

>> PDZ_6  PDZ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.2   0.0     0.074   1.7e+02       4      17 ..     310     323 ..     307     324 .. 0.82
   2 !   15.1   0.2   6.8e-06     0.015      12      56 .]     328     372 ..     319     372 .. 0.88

  Alignments for each domain:
  == domain 1  score: 2.2 bits;  conditional E-value: 0.074
       PDZ_6   4 aVdpgsPAdrAGlr 17 
                  V + s Ad+AGlr
  KOO21132.1 310 DVPEQSSADKAGLR 323
                 5667899******8 PP

  == domain 2  score: 15.1 bits;  conditional E-value: 6.8e-06
       PDZ_6  12 drAG.lrvGDiilsvNGqpveglsladvaallr.gsagesvvlvvrr 56 
                  r G + +GD+i++vN   v   +  ++ +++   ++g +v+l+v r
  KOO21132.1 328 SRSGeIVIGDVITAVNSDVV--DDDIELFRAIDkFKPGDRVTLTVSR 372
                 677889**************..***********999*******9976 PP

>> Peptidase_S29  Hepatitis C virus NS3 protease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.0       1.9   4.2e+03      99     123 ..      95     117 ..      79     131 .. 0.63
   2 ?   12.6   0.0   3.9e-05     0.088     105     148 ..     227     271 ..     212     272 .. 0.90

  Alignments for each domain:
  == domain 1  score: -2.6 bits;  conditional E-value: 1.9
  Peptidase_S29  99 sprelselkGssGsPilCdsGhvvG 123
                    s++e+s   Gs  + +  d Gh+v 
     KOO21132.1  95 SATEVSAGTGS--GFVWDDAGHIVT 117
                    45555554444..456777788775 PP

  == domain 2  score: 12.6 bits;  conditional E-value: 3.9e-05
  Peptidase_S29 105 elkGssGsPilCdsGhvvGllvaavcsggvvkavrfv.Pvetlet 148
                       G sG+ +l +sG  +G+ +a+    g    + f  Pv+tl++
     KOO21132.1 227 INPGNSGGALLDSSGRLIGMNTAIYSPSGASAGIGFAiPVDTLKY 271
                    5569********************************99**99986 PP

>> Peptidase_S32  Equine arteritis virus serine endopeptidase S32
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.6   0.1   0.00044      0.98     104     147 ..      92     136 ..      69     146 .. 0.77
   2 ?    3.6   0.2     0.014        31     206     227 ..     228     249 ..     206     261 .. 0.86

  Alignments for each domain:
  == domain 1  score: 8.6 bits;  conditional E-value: 0.00044
                    TEEEEESSSEEEEEEEECTTEEEEEEEHHHH-.TSEEEEEETTEE CS
  Peptidase_S32 104 nvvsvvGsslGsGgvftidgevvvvtashvlg.dnkarvsivgas 147
                     + s + +s G+G+ f  d+   +vt  hv+  ++ a+v  ++ +
     KOO21132.1  92 MSMSATEVSAGTGSGFVWDDAGHIVTNYHVIRsAEAAKVVLTDEN 136
                    4566777899999999999999*********86888888776654 PP

  == domain 2  score: 3.6 bits;  conditional E-value: 0.014
                    -GGGTT-EEEETTE.EEEEEEE CS
  Peptidase_S32 206 kcGDsGspvvdedgelvGvhtG 227
                    ++G+sG +++d +g l+G+ t 
     KOO21132.1 228 NPGNSGGALLDSSGRLIGMNTA 249
                    79****************9995 PP

>> PDZ  PDZ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.2   0.2   0.00068       1.5      35      81 ..     323     370 ..     275     371 .. 0.79

  Alignments for each domain:
  == domain 1  score: 9.2 bits;  conditional E-value: 0.00068
                 TTSHHHHHT.SSTTEEEEEETTEETTT.SHHHHHHHHHHTTTSEEEEEE CS
         PDZ  35 pggaaeadg.lkvGDkIlsvNgvdven.vsheeavqaikgskgkvtLti 81 
                 +g+   ++g + +GD+I++vN   v + +++ +a+++ k+  + vtLt+
  KOO21132.1 323 RGSYRSRSGeIVIGDVITAVNSDVVDDdIELFRAIDKFKPG-DRVTLTV 370
                 4566678999***********96665414444555555444.5777776 PP

>> Peptidase_S46  Peptidase S46
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.4   0.0     0.042        95      32      70 ..      87     125 ..      82     144 .. 0.85
   2 ?    7.6   0.5   0.00058       1.3     627     651 ..     223     247 ..     213     249 .. 0.87

  Alignments for each domain:
  == domain 1  score: 1.4 bits;  conditional E-value: 0.042
                    S-SSS--GGG--EETTTEE-EE-STT-EEEE-HHHHHHH CS
  Peptidase_S46  32 adlrrsskdAvvsflggCtasfVSpeGLvlTNHHCayga 70 
                    ++++r s+ A+   +g  ++ +  + G ++TN H++++a
     KOO21132.1  87 QKTDRMSMSATEVSAGTGSGFVWDDAGHIVTNYHVIRSA 125
                    567888888875559999999999**********99875 PP

  == domain 2  score: 7.6 bits;  conditional E-value: 0.00058
                    ES----TT-TT-EEE-TTS-EEEEE CS
  Peptidase_S46 627 stnDitGGNSGSPvlngkgelvGla 651
                    +++ i  GNSG ++l+++g+l+G++
     KOO21132.1 223 TDAAINPGNSGGALLDSSGRLIGMN 247
                    5667889****************87 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (394 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       457  (0.0254894); expected 358.6 (0.02)
Passed bias filter:                      411  (0.0229238); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.48u 0.24s 00:00:00.72 Elapsed: 00:00:00.39
# Mc/sec: 3016.13
//
Query:       KOO21133.1  [L=492]
Description: mitochondrial substrate carrier family protein ucpb [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.5e-50  169.1   4.7    1.1e-19   70.2   0.1    3.2  3  Mito_carr     Mitochondrial carrier protein
    1.1e-20   71.6   2.1    2.6e-06   26.6   0.0    3.5  3  EF-hand_1     EF hand
    3.6e-19   67.3   3.4    5.9e-06   25.5   0.1    3.5  3  EF-hand_5     EF hand
    6.3e-18   65.0   4.2    1.4e-10   41.5   0.3    2.7  3  EF-hand_7     EF-hand domain pair
    1.5e-17   63.2   1.9    1.5e-09   37.5   0.3    3.0  3  EF-hand_8     EF-hand domain pair
    1.2e-16   59.1   5.7    9.6e-06   25.1   0.1    4.4  4  EF-hand_6     EF-hand domain
     0.0027   18.0   0.0       0.02   15.2   0.0    2.0  2  SPARC_Ca_bdg  Secreted protein acidic and rich in cysteine Ca
  ------ inclusion threshold ------
      0.022   14.7   0.1       0.51   10.3   0.0    2.3  2  EF-hand_4     Cytoskeletal-regulatory complex EF hand
       0.05   13.9   0.1       0.13   12.6   0.0    1.8  1  EF-hand_9     EF-hand domain


Domain annotation for each model (and alignments):
>> Mito_carr  Mitochondrial carrier protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.2   0.1   5.3e-23   1.1e-19       4      91 ..     210     298 ..     207     302 .. 0.93
   2 !   64.3   0.1   3.6e-21   7.1e-18       2      94 ..     307     395 ..     306     398 .. 0.94
   3 !   35.5   0.2   3.6e-12   7.2e-09       6      95 ..     406     489 ..     402     491 .. 0.91

  Alignments for each domain:
  == domain 1  score: 70.2 bits;  conditional E-value: 5.3e-23
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSTTTSCSS.HHHHHHHHHHHHHHHGGGTTHHHHHHHHHHHHHHHHHHHHHHHH CS
   Mito_carr   4 svlkellaGglagavatlvttPldvvKtrlqtqkksskksksaa.ildvlkkiykeeGlrglyrGllpnllrvapasalkfvlyetlkr 91 
                 +++++ll Gglag+va++v++P+++vK+rlq+ +  +   k+++ i ++++ i+ eeG+++l++G+ p+ lr  ++s l+f+ly+ +k 
  KOO21133.1 210 PLAAQLLPGGLAGVVAQTVVQPIETVKVRLQAGSVGKMPCKYGGsISNCFRIIMVEEGVHALWKGMYPSALRELSYSTLRFGLYKPIKV 298
                 67899***************************9999988888888***************************************98885 PP

  == domain 2  score: 64.3 bits;  conditional E-value: 3.6e-21
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSTTTSCSSHHHHHHHHHHHHHHHGGGTTHHHHHHHHHHHHHHHHHHHHHHHHHHC CS
   Mito_carr   2 elsvlkellaGglagavatlvttPldvvKtrlqtqkksskksksaaildvlkkiykeeGlrglyrGllpnllrvapasalkfvlyetlkrlll 94 
                 +++++k ++aGglag +a+++++P+d++Ktr+q+++++   s    ++   + i+   G+ +++rG++ ++ r +   a+k+++y+t k+++ 
  KOO21133.1 307 DTPLWKMMFAGGLAGGIASFIANPTDLLKTRMQNDQTNPPRS----TMAHTRDIFAMGGVGAFWRGASTTVARAVTLGAVKMASYDTAKEVIE 395
                 57899*********************************9875....78899**************************************9986 PP

  == domain 3  score: 35.5 bits;  conditional E-value: 3.6e-12
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSTTTSCSSHHHHHHHHHHHHHHHGGGTTHHHHHHHHHHHHHHHHHHHHHHHHHHCT CS
   Mito_carr   6 lkellaGglagavatlvttPldvvKtrlqtqkksskksksaaildvlkkiykeeGlrglyrGllpnllrvapasalkfvlyetlkrlllk 95 
                 ++++ a+ l +a ++++t+P+d+++t++++  +s        ++++    +   G + l+ G+lp+ +r+ p+  l+f++ e+l ++l +
  KOO21133.1 406 ANTIGAAFLTAANTVFFTAPVDFIRTQVMLGDGSRG------MARIAVDAVSARGPLVLWNGWLPQYMRILPYGTLQFFFMEKLANMLGT 489
                 56677888899999****************999966......89999*************************************999865 PP

>> EF-hand_1  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.1   0.1   1.6e-07   0.00031       2      26 ..      57      81 ..      56      84 .. 0.90
   2 !   23.0   0.1   1.8e-08   3.6e-05       2      28 ..      88     114 ..      87     115 .. 0.90
   3 !   26.6   0.0   1.3e-09   2.6e-06       2      27 ..     124     149 ..     123     151 .. 0.92

  Alignments for each domain:
  == domain 1  score: 20.1 bits;  conditional E-value: 1.6e-07
                HHHHHHHHTTTSSSEEEHHHHHHHH CS
   EF-hand_1  2 lkeiFrefDkDgdGkIdfeEfkell 26
                +++iF+ +D DgdG I ++Ef +++
  KOO21133.1 57 MEDIFARVDLDGDGIIQYSEFSAYV 81
                689******************8765 PP

  == domain 2  score: 23.0 bits;  conditional E-value: 1.8e-08
                 HHHHHHHHTTTSSSEEEHHHHHHHHHH CS
   EF-hand_1   2 lkeiFrefDkDgdGkIdfeEfkellkk 28 
                 l+ +F+ +D+Dg+G I+++E+k ll +
  KOO21133.1  88 LRTAFDAIDVDGSGEITKDELKLLLDR 114
                 6889******************99865 PP

  == domain 3  score: 26.6 bits;  conditional E-value: 1.3e-09
                 HHHHHHHHTTTSSSEEEHHHHHHHHH CS
   EF-hand_1   2 lkeiFrefDkDgdGkIdfeEfkellk 27 
                 ++e+ r +D+Dg+G+I+feE++++++
  KOO21133.1 124 IDELLRNVDTDGSGTISFEEWRSAFA 149
                 899********************987 PP

>> EF-hand_5  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.4   0.1   5.4e-07    0.0011       2      22 ..      58      78 ..      57      81 .. 0.90
   2 !   25.5   0.1     3e-09   5.9e-06       1      24 [.      88     111 ..      88     112 .. 0.90
   3 !   22.7   0.0   2.4e-08   4.7e-05       2      23 ..     125     146 ..     124     149 .. 0.88

  Alignments for each domain:
  == domain 1  score: 18.4 bits;  conditional E-value: 5.4e-07
                HHHHHHH-SS-SSCE-HHHHH CS
   EF-hand_5  2 kdtFqaiDlNgDGkIskeELk 22
                +d F ++Dl+gDG I  +E+ 
  KOO21133.1 58 EDIFARVDLDGDGIIQYSEFS 78
                799****************97 PP

  == domain 2  score: 25.5 bits;  conditional E-value: 3e-09
                 HHHHHHHH-SS-SSCE-HHHHHHH CS
   EF-hand_5   1 lkdtFqaiDlNgDGkIskeELktl 24 
                 l+ +F+aiD++g+G I+k+ELk l
  KOO21133.1  88 LRTAFDAIDVDGSGEITKDELKLL 111
                 5778*****************976 PP

  == domain 3  score: 22.7 bits;  conditional E-value: 2.4e-08
                 HHHHHHH-SS-SSCE-HHHHHH CS
   EF-hand_5   2 kdtFqaiDlNgDGkIskeELkt 23 
                 +++++ +D++g+G+Is+eE++ 
  KOO21133.1 125 DELLRNVDTDGSGTISFEEWRS 146
                 678999**************86 PP

>> EF-hand_7  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.5   0.1   1.4e-08   2.7e-05       5      69 ..      23      80 ..      19      82 .. 0.90
   2 !   41.5   0.3   6.9e-14   1.4e-10       1      68 [.      85     146 ..      85     149 .. 0.82
   3 ?   -2.2   0.0         3     6e+03      19      43 ..     151     168 ..     150     181 .. 0.61

  Alignments for each domain:
  == domain 1  score: 24.5 bits;  conditional E-value: 1.4e-08
   EF-hand_7  5 kea.FkelDtdgdgyldkeellrllrkifqgagegsklsdeelellfkefDtdkdGvisfdEFlkl 69
                k+  F+e+ + g   l+k++l+ +l          +++s+  +e++f  +D+d+dG i ++EF ++
  KOO21133.1 23 KRSlFDEYVKEGKDGLSKADLRGVLD------KLHVPPSR--MEDIFARVDLDGDGIIQYSEFSAY 80
                5566******************9999......89999999..88*******************987 PP

  == domain 2  score: 41.5 bits;  conditional E-value: 6.9e-14
   EF-hand_7   1 eeklkeaFkelDtdgdgyldkeellrllrkifqgagegsklsdee.lellfkefDtdkdGvisfdEFlk 68 
                 e+ l++aF+++D+dg+g ++k+el+ ll       +   k  + + +++l++++Dtd++G+isf+E + 
  KOO21133.1  85 EYSLRTAFDAIDVDGSGEITKDELKLLLD------RMHMK-CEASrIDELLRNVDTDGSGTISFEEWRS 146
                 5789*********************6555......44444.44334*******************9665 PP

  == domain 3  score: -2.2 bits;  conditional E-value: 3
   EF-hand_7  19 ldkeellrllrkifqgagegsklsd 43 
                 ld+e+llr l       +e ++++d
  KOO21133.1 151 LDPEDLLRSL-------DESVSFTD 168
                 7888866544.......44555554 PP

>> EF-hand_8  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.8   0.0   1.4e-08   2.8e-05       2      52 ..      35      81 ..      34      83 .. 0.90
   2 !    6.7   0.1    0.0032       6.4      28      47 ..      88     107 ..      85     107 .. 0.89
   3 !   37.5   0.3   7.6e-13   1.5e-09       2      48 ..     100     144 ..      99     151 .. 0.90

  Alignments for each domain:
  == domain 1  score: 23.8 bits;  conditional E-value: 1.4e-08
   EF-hand_8  2 kgkItreelrrilrilglkkglseeevdilfrefDtdgdGkisfeEFcvll 52
                k+ +++++lr  l +l+    + ++ ++++f ++D+dgdG+i + EF +++
  KOO21133.1 35 KDGLSKADLRGVLDKLH----VPPSRMEDIFARVDLDGDGIIQYSEFSAYV 81
                78899999999787765....9*************************9987 PP

  == domain 2  score: 6.7 bits;  conditional E-value: 0.0032
   EF-hand_8  28 vdilfrefDtdgdGkisfeE 47 
                 +++ f+++D dg+G i+++E
  KOO21133.1  88 LRTAFDAIDVDGSGEITKDE 107
                 7889*************998 PP

  == domain 3  score: 37.5 bits;  conditional E-value: 7.6e-13
   EF-hand_8   2 kgkItreelrrilrilglkkglseeevdilfrefDtdgdGkisfeEF 48 
                 +g+It++el+  l  +++k  + ++ +d+l+r +Dtdg+G+isfeE 
  KOO21133.1 100 SGEITKDELKLLLDRMHMK--CEASRIDELLRNVDTDGSGTISFEEW 144
                 79***********656***..************************95 PP

>> EF-hand_6  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.9   0.0     0.064   1.3e+02       3      27 ..      24      48 ..      22      51 .. 0.90
   2 !   13.6   0.1   2.5e-05     0.049       1      24 [.      56      79 ..      56      83 .. 0.90
   3 !   25.1   0.1   4.8e-09   9.6e-06       2      27 ..      88     113 ..      87     118 .. 0.92
   4 !   17.2   0.0   1.7e-06    0.0035       2      27 ..     124     149 ..     123     155 .. 0.89

  Alignments for each domain:
  == domain 1  score: 2.9 bits;  conditional E-value: 0.064
   EF-hand_6  3 reaFklfDkdgdGkidaeElrkalr 27
                r++F+++ k+g   +++++lr +l 
  KOO21133.1 24 RSLFDEYVKEGKDGLSKADLRGVLD 48
                689*******9999*******9997 PP

  == domain 2  score: 13.6 bits;  conditional E-value: 2.5e-05
   EF-hand_6  1 elreaFklfDkdgdGkidaeElrk 24
                +++++F   D dgdG i ++E+ +
  KOO21133.1 56 RMEDIFARVDLDGDGIIQYSEFSA 79
                589******************965 PP

  == domain 3  score: 25.1 bits;  conditional E-value: 4.8e-09
   EF-hand_6   2 lreaFklfDkdgdGkidaeElrkalr 27 
                 lr aF+++D+dg+G+i+++El+ +l 
  KOO21133.1  88 LRTAFDAIDVDGSGEITKDELKLLLD 113
                 899*******************9886 PP

  == domain 4  score: 17.2 bits;  conditional E-value: 1.7e-06
   EF-hand_6   2 lreaFklfDkdgdGkidaeElrkalr 27 
                 ++e+ +  D+dg+G+i++eE+r+a+ 
  KOO21133.1 124 IDELLRNVDTDGSGTISFEEWRSAFA 149
                 67889999**************9986 PP

>> SPARC_Ca_bdg  Secreted protein acidic and rich in cysteine Ca binding region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.6   0.0      0.17   3.4e+02      70     111 ..      37      78 ..      13      80 .. 0.76
   2 !   15.2   0.0     1e-05      0.02      45     111 ..      77     145 ..      70     147 .. 0.84

  Alignments for each domain:
  == domain 1  score: 1.6 bits;  conditional E-value: 0.17
  SPARC_Ca_bdg  70 vlsksELaplraplvklehCikpflescDadkdkkislkEwc 111
                    lsk++L+ +  +l    + ++  + + D+d d+ i+ +E+ 
    KOO21133.1  37 GLSKADLRGVLDKLHVPPSRMEDIFARVDLDGDGIIQYSEFS 78 
                   577778887777777777888889999999999999999985 PP

  == domain 2  score: 15.2 bits;  conditional E-value: 1e-05
  SPARC_Ca_bdg  45 eeknlkeckepvawkFsklDtnsdkvlsksELaplrapl.vklehC.ikpflescDadkdkkislkEwc 111
                   ++  +++++++++  F+ +D++  + ++k EL+ l   + +k e   i+++l++ D+d  ++is +Ew 
    KOO21133.1  77 FSAYVDAHEYSLRTAFDAIDVDGSGEITKDELKLLLDRMhMKCEASrIDELLRNVDTDGSGTISFEEWR 145
                   55667888999999*******************9866442556643499*******************6 PP

>> EF-hand_4  Cytoskeletal-regulatory complex EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.0   0.00025      0.51      19      67 ..      31      79 ..      14      95 .. 0.84
   2 ?    1.6   0.1      0.14   2.7e+02      39      68 ..     118     147 ..      96     159 .. 0.70

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.00025
   EF-hand_4 19 lkpednkltgdkvapvlknskleedklekiwdladidedgkldfeefci 67
                +k+ ++ l++  + +vl + +++ +++e i+   d+d dg + + ef  
  KOO21133.1 31 VKEGKDGLSKADLRGVLDKLHVPPSRMEDIFARVDLDGDGIIQYSEFSA 79
                566778899999***********************************75 PP

  == domain 2  score: 1.6 bits;  conditional E-value: 0.14
   EF-hand_4  39 kleedklekiwdladidedgkldfeefcia 68 
                 k e ++++++    d d  g++ fee+  a
  KOO21133.1 118 KCEASRIDELLRNVDTDGSGTISFEEWRSA 147
                 445667778888889999999*****8655 PP

>> EF-hand_9  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   6.7e-05      0.13       2      58 ..      90     144 ..      89     149 .. 0.93

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 6.7e-05
   EF-hand_9   2 tvFevcDtqktGrVpvsrlidyLravtaqdpeeseLeelakelDPdgedasvdldtf 58 
                 t F++ D++  G+++  +l+ +L  +   + e s+++el +++D dg  +++ ++ +
  KOO21133.1  90 TAFDAIDVDGSGEITKDELKLLLDRMHM-KCEASRIDELLRNVDTDGS-GTISFEEW 144
                 67***********************999.99999**************.99999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (492 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       397  (0.0221429); expected 358.6 (0.02)
Passed bias filter:                      354  (0.0197445); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.49u 0.25s 00:00:00.74 Elapsed: 00:00:00.38
# Mc/sec: 3908.44
//
Query:       KOO21134.1  [L=257]
Description: hypothetical protein Ctob_001826 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
  ------ inclusion threshold ------
       0.25   11.7   1.5       0.41   11.0   1.5    1.3  1  zf-C2H2_jaz    Zinc-finger double-stranded RNA-binding
       0.89   10.0   2.4        1.6    9.3   2.4    1.3  1  zf-met         Zinc-finger of C2H2 type
        1.1   10.1   8.4        2.4    9.1   4.2    2.6  2  Stm1_N         Stm1


Domain annotation for each model (and alignments):
>> zf-C2H2_jaz  Zinc-finger double-stranded RNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   1.5   6.8e-05      0.41       3      21 ..       6      24 ..       6      25 .. 0.94

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 6.8e-05
                 BBTTTTBBBSSHHHHHCCT CS
  zf-C2H2_jaz  3 YCvlCdKyFksenaldnHl 21
                 +C +C+ +F+++ +l +H+
   KOO21134.1  6 FCAICSIHFSNSATLAKHC 24
                 7*****************6 PP

>> zf-met  Zinc-finger of C2H2 type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3   2.4   0.00026       1.6       2      20 ..       6      24 ..       5      25 .. 0.93

  Alignments for each domain:
  == domain 1  score: 9.3 bits;  conditional E-value: 0.00026
      zf-met  2 yCelCnvtfnsesqlksHl 20
                +C +C + f++ ++l  H 
  KOO21134.1  6 FCAICSIHFSNSATLAKHC 24
                7*****************6 PP

>> Stm1_N  Stm1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.1   4.2    0.0004       2.4      19      49 ..      31      60 ..      16      64 .. 0.81
   2 ?    2.3   0.1     0.053   3.2e+02       9      39 ..     219     254 ..     218     257 .] 0.47

  Alignments for each domain:
  == domain 1  score: 9.1 bits;  conditional E-value: 0.0004
      Stm1_N 19 sqaapapppkevdkkstrsaKrptkpepPsq 49
                s aap+pp+ ++++++++  Krp++ + P +
  KOO21134.1 31 S-AAPSPPAPAAAAAPATREKRPAGSSIPVE 60
                4.677777777888888999*****999976 PP

  == domain 2  score: 2.3 bits;  conditional E-value: 0.053
      Stm1_N   9 LLGdDdeeDpsq.....aapapppkevdkkstrsaK 39 
                 LLGdD++          +a+ + +    ++s++++K
  KOO21134.1 219 LLGDDEITQLRLlfeglQAAVKSAEGETAPSKKQKK 254
                 999995544433775553333333333334444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (257 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       671  (0.0374254); expected 358.6 (0.02)
Passed bias filter:                      457  (0.0254894); expected 358.6 (0.02)
Passed Vit filter:                        55  (0.00306766); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.44u 0.25s 00:00:00.69 Elapsed: 00:00:00.42
# Mc/sec: 1854.89
//
Query:       KOO21135.1  [L=382]
Description: nuclear cap-binding protein subunit 1-like protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.6e-07   30.5   0.0      4e-07   29.9   0.0    1.4  2  MIF4G     MIF4G domain


Domain annotation for each model (and alignments):
>> MIF4G  MIF4G domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.9   0.0   2.2e-11     4e-07      34     136 ..      21     113 ..       3     208 .. 0.84
   2 ?   -4.0   0.0      0.51   9.2e+03     122     146 ..     218     243 ..     216     245 .. 0.78

  Alignments for each domain:
  == domain 1  score: 29.9 bits;  conditional E-value: 2.2e-11
                 HHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHC-S-HHHHHHHHHHHHHHHHHHHHHHHHHHTTSSEHHHHHHHHHHH CS
       MIF4G  34 elkevielifekaveepsfsplyarlcgklnsrfqqnFrikllnklqeefekryeleneleenedgnrrrrlglvrflgelfklkmltskilldclkel 132
                 +++ +ie+++++a++  ++s+ ya+l+g ln+  + +++  ++++ + e++            ed + + ++gl rf++ l    ++ ++ +++ l++l
  KOO21135.1  21 QRSLIIETVIDCARSLHTKSTVYATLTGLLNAADS-DIGGEIVEAAHRELQG---------AFEDHAPMAIRGLTRFFCGLMSARTIACSSVVELLERL 109
                 6789*******************************.****************.........999*********************************** PP

                 HHGG CS
       MIF4G 133 lssl 136
                 l+  
  KOO21135.1 110 LDAR 113
                 9864 PP

  == domain 2  score: -4.0 bits;  conditional E-value: 0.51
                 HHHHHHHHHHHHHGGCCCCSC.CHSC CS
       MIF4G 122 skilldclkellssltketad.dppq 146
                 s +++d+++ l+ + + ++ad ++++
  KOO21135.1 218 SPPMVDSMDALIGDADADEADeMQVD 243
                 66899999999999999887777665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (382 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       432  (0.024095); expected 358.6 (0.02)
Passed bias filter:                      338  (0.0188521); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.23s 00:00:00.71 Elapsed: 00:00:00.41
# Mc/sec: 2796.01
//
Query:       KOO21136.1  [L=352]
Description: guanylate cyclase activator 1a [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0003   21.2   0.5       0.02   15.3   0.1    2.7  4  EF-hand_7  EF-hand domain pair
     0.0008   19.1   0.1     0.0062   16.4   0.0    2.4  2  EF-hand_6  EF-hand domain
     0.0062   16.0   0.0      0.037   13.6   0.0    2.3  2  EF-hand_1  EF hand


Domain annotation for each model (and alignments):
>> EF-hand_7  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.0   0.0     0.011        68      42      67 ..     130     156 ..      93     160 .. 0.79
   2 !   15.3   0.1   3.3e-06      0.02      23      66 ..     151     191 ..     136     196 .. 0.82
   3 !   11.8   0.0   4.3e-05      0.25       2      25 ..     169     192 ..     168     218 .. 0.72
   4 ?   -2.2   0.0      0.97   5.8e+03      19      33 ..     238     258 ..     236     293 .. 0.64

  Alignments for each domain:
  == domain 1  score: 4.0 bits;  conditional E-value: 0.011
   EF-hand_7  42 sdeelellfkefDtdkd.GvisfdEFl 67 
                 ++ ++++lfk+f++ +   +i+f E+ 
  KOO21136.1 130 DPVHIDRLFKNFNHPNQpEKIDFREYI 156
                 4567********998887999999997 PP

  == domain 2  score: 15.3 bits;  conditional E-value: 3.3e-06
   EF-hand_7  23 ellrllrkifqgagegsklsdeelellfkefDtdkdGvisfdEF 66 
                 ++++++r +    + ++++ ++ l+llf+ +D d++G++s++E+
  KOO21136.1 151 DFREYIRTLC---SVNEEPIEDRLRLLFDVWDVDHSGSLSYSEL 191
                 4555677766...7888888899******************996 PP

  == domain 3  score: 11.8 bits;  conditional E-value: 4.3e-05
   EF-hand_7   2 eklkeaFkelDtdgdgyldkeell 25 
                 ++l+  F+  D+d++g+l+++el 
  KOO21136.1 169 DRLRLLFDVWDVDHSGSLSYSELG 192
                 566677888888888888888887 PP

  == domain 4  score: -2.2 bits;  conditional E-value: 0.97
   EF-hand_7  19 ldkeellr......llrkifq 33 
                 ++ke+l +      ++r +f 
  KOO21136.1 238 ISKEDLVEsarrpgFVRDFFM 258
                 778887775556664444443 PP

>> EF-hand_6  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.0      0.47   2.8e+03       2      21 ..     134     154 ..     133     160 .. 0.62
   2 !   16.4   0.0     1e-06    0.0062       2      26 ..     171     195 ..     170     203 .. 0.88

  Alignments for each domain:
  == domain 1  score: -1.3 bits;  conditional E-value: 0.47
   EF-hand_6   2 lreaFklfD.kdgdGkidaeE 21 
                 ++++Fk f   +   kid+ E
  KOO21136.1 134 IDRLFKNFNhPNQPEKIDFRE 154
                 567888883244444777776 PP

  == domain 2  score: 16.4 bits;  conditional E-value: 1e-06
   EF-hand_6   2 lreaFklfDkdgdGkidaeElrkal 26 
                 lr +F+ +D+d++G+++++El  ++
  KOO21136.1 171 LRLLFDVWDVDHSGSLSYSELGIII 195
                 7889*****************9876 PP

>> EF-hand_1  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.0      0.57   3.4e+03      16      24 ..     149     157 ..     149     159 .. 0.76
   2 !   13.6   0.0   6.2e-06     0.037       3      24 ..     172     193 ..     170     197 .. 0.86

  Alignments for each domain:
  == domain 1  score: -2.0 bits;  conditional E-value: 0.57
                 EEEHHHHHH CS
   EF-hand_1  16 kIdfeEfke 24 
                 kIdf E+++
  KOO21136.1 149 KIDFREYIR 157
                 799999875 PP

  == domain 2  score: 13.6 bits;  conditional E-value: 6.2e-06
                 HHHHHHHTTTSSSEEEHHHHHH CS
   EF-hand_1   3 keiFrefDkDgdGkIdfeEfke 24 
                 + +F++ D+D++G ++++E+  
  KOO21136.1 172 RLLFDVWDVDHSGSLSYSELGI 193
                 668****************975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (352 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       643  (0.0358637); expected 358.6 (0.02)
Passed bias filter:                      444  (0.0247643); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.47u 0.23s 00:00:00.70 Elapsed: 00:00:00.39
# Mc/sec: 2678.24
//
Query:       KOO21137.1  [L=448]
Description: hypothetical protein Ctob_001832 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    5.4e-10   40.0   0.0    0.00062   20.6   0.0    3.5  4  Filamin      Filamin/ABP280 repeat
  ------ inclusion threshold ------
        1.7    9.0   8.9          3    8.2   8.9    1.3  1  Uso1_p115_C  Uso1 / p115 like vesicle tethering protein, C te
        2.9    6.9   8.9        4.4    6.3   8.9    1.2  1  FAM199X      Protein family FAM199X


Domain annotation for each model (and alignments):
>> Filamin  Filamin/ABP280 repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.8   0.0      0.14   8.4e+02      73      94 ..      31      52 ..      14      68 .. 0.74
   2 !   20.6   0.0     1e-07   0.00062      72     103 .]     167     198 ..     110     198 .. 0.90
   3 !   14.1   0.0   1.1e-05     0.065      21      94 ..     224     294 ..     206     306 .. 0.81
   4 ?   -3.2   0.0       2.5   1.5e+04      65      85 ..     362     382 ..     334     384 .. 0.69

  Alignments for each domain:
  == domain 1  score: 0.8 bits;  conditional E-value: 0.14
                EEEEEE--SSSCEEEEEEEETT CS
     Filamin 73 tytvsYtpeepgtyrvsvkldg 94
                 ++++Ytp+++g++++ + l +
  KOO21137.1 31 QFEMHYTPTQAGELELFLWLSD 52
                6899*********998776655 PP

  == domain 2  score: 20.6 bits;  conditional E-value: 1e-07
                 SEEEEEE--SSSCEEEEEEEETTCE-TTSSEE CS
     Filamin  72 gtytvsYtpeepgtyrvsvkldgkhiggsPfd 103
                  ty+ +Ytp+ +g+y v+v+l g +i gsP +
  KOO21137.1 167 TTYESRYTPTIKGEYAVQVTLEGAQINGSPVH 198
                 69****************************75 PP

  == domain 3  score: 14.1 bits;  conditional E-value: 1.1e-05
                 S-EEEEEEESSSTSCCCSTTS..EEEEE...ESSTS.....EEEEEEEE-SSSEEEEEE--SSSCEEEEEEEETT CS
     Filamin  21 esltFtvytkdakgeksevggdelqvriv.tgsphgaatkssvkievvdnedgtytvsYtpeepgtyrvsvkldg 94 
                  +++++ +t d++g+ +  gg  +  r++  + p+g+    + +  v+d++dgty+ + +++ +++++  +++++
  KOO21137.1 224 TPYEIILHTADKYGNACSRGGGSVAGRLQsATLPSGQ----DSNLMVTDRDDGTYVLHVNMNGSCDIKTIITVAN 294
                 6789999********9999996666666434456666....66778*********************99999988 PP

  == domain 4  score: -3.2 bits;  conditional E-value: 2.5
                 EEEE-SSSEEEEEE--SSSCE CS
     Filamin  65 evvdnedgtytvsYtpeepgt 85 
                   +   d +y +s+ ++++gt
  KOO21137.1 362 AGSPAADSSYSASMAAAAKGT 382
                 455566888888888888876 PP

>> Uso1_p115_C  Uso1 / p115 like vesicle tethering protein, C terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.2   8.9   0.00051         3      18     102 ..     332     416 ..     309     426 .. 0.53

  Alignments for each domain:
  == domain 1  score: 8.2 bits;  conditional E-value: 0.00051
  Uso1_p115_C  18 eklkaelqslskalesleqkeakkaaesqakeleaenkklek.........eleklraelkeekekekekqkEldDLLlllgDleeKvekykar 102
                  ++ ka l ++ska+ s+ ++         a  +ea++ +  +          + ++ +  k+ekek k  ++  +++L  +g  +e+++k+ a+
   KOO21137.1 332 SAPKATLAEASKATSSTSSS---------AAAAEATMPAAGSpaadssysaSMAAAAKGTKKEKEKVKGLKAAANEMLQAMGTRDERRQKLVAK 416
                  22334444444444444444.........33333333333335554433325555555555555555555********************9876 PP

>> FAM199X  Protein family FAM199X
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.3   8.9   0.00073       4.4     214     304 ..     328     420 ..     311     431 .. 0.70

  Alignments for each domain:
  == domain 1  score: 6.3 bits;  conditional E-value: 0.00073
     FAM199X 214 saasssnasmvssassstasvgssaansaanisrahsdsnlssaaerirdskkrskqrklqqkalrkr..qlkeqrqarkerlsglflneevl 304
                 +a ss+  + ++ as +t+s++ssaa++ a +  a s ++ ss +  +  + k +k+ k + k l+    ++ +   +r er   l  +ee +
  KOO21137.1 328 AAPSSAPKATLAEASKATSSTSSSAAAAEATMPAAGSPAADSSYSASMAAAAKGTKKEKEKVKGLKAAanEMLQAMGTRDERRQKLVAKEEAF 420
                 455666777888999999999999999999999998877777666666666666666666666665431123334455777777777777765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (448 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1080  (0.0602376); expected 358.6 (0.02)
Passed bias filter:                      501  (0.0279436); expected 358.6 (0.02)
Passed Vit filter:                        51  (0.00284455); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.55u 0.24s 00:00:00.79 Elapsed: 00:00:00.41
# Mc/sec: 3248.67
//
Query:       KOO21138.1  [L=359]
Description: hypothetical protein Ctob_001833, partial [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    8.3e-16   58.8   0.2    1.3e-15   58.1   0.2    1.4  1  DUF563    Protein of unknown function (DUF563)
  ------ inclusion threshold ------
       0.12   12.2   0.3        0.5   10.1   0.0    2.3  3  GlutR_N   Glutamyl-tRNAGlu reductase, N-terminal domain


Domain annotation for each model (and alignments):
>> DUF563  Protein of unknown function (DUF563)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.1   0.2   1.5e-19   1.3e-15       2     186 ..      38     256 ..      36     282 .. 0.60

  Alignments for each domain:
  == domain 1  score: 58.1 bits;  conditional E-value: 1.5e-19
      DUF563   2 nygHwlvdvlprl.llleqlvlddddril............vpalaspqpfqrellkllgirpekrikveldepvhve..........klivpvppr.. 75 
                 ++ H ++   p +  lle+ ++  d +++             p+ +  +++   +l++l  ++ + i  +l++ + ++          + +++ ++r  
  KOO21138.1  38 MF-HAMFHAPPAWqHLLEHVRQVADHVFIplvgyvagrawvKPPEWKAHAWE-FSLRALTAKATEEIARDLGKLLSATctcfgrvegsTGYFSLASRqr 134
                 55.7777777777777777777777333332233232222244444444444.3556666667777766666444444445556666633333333322 PP

      DUF563  76 .....ssggfqgallpklrdrlrerlnlekr.........kkptrvlyisRlkagsRrilNeeev...lkllpkrgfevvdpeslsfeeqiklfssakv 157
                        +g+++++l    ++ r+++ l             +  r l+i R  +gsR i+N+ ev   l+llp   +++v +e+l++ eqi l ssa+ 
  KOO21138.1 135 satlpVLHGWRSSAL----EHARAAVRLAAVtlrqnsvthASL-RALFIKR-ISGSRVIVNQVEVddaLRLLP--MVQIVIMETLTLCEQILLASSAQT 225
                 322222233333333....333333333332332334443555.999****.*********999944346666..5779999***************** PP

      DUF563 158 ivgphGsgltnliFmpp...gttvielvppnr 186
                 ++g+hG +l++++F+pp   +t+ +e++p+  
  KOO21138.1 226 LIGVHGQALSHMVFLPPsptHTAFVEILPK-I 256
                 ***************998888******665.3 PP

>> GlutR_N  Glutamyl-tRNAGlu reductase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.0   5.5e-05       0.5      34      55 ..      13      34 ..       2     115 .. 0.71
   2 ?   -2.9   0.1      0.56     5e+03     111     140 ..     156     185 ..     153     191 .. 0.72
   3 ?   -1.8   0.0      0.26   2.3e+03     108     131 ..     330     353 ..     328     357 .. 0.76

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 5.5e-05
     GlutR_N 34 vkeaviLsTCNRtEiylsaeee 55
                 +e+  LsTCNR E+ ++   +
  KOO21138.1 13 KDEVDHLSTCNRHELGVALYFQ 34
                458889********97533332 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 0.56
     GlutR_N 111 vkeayelakeagtlgkvLerlfqkaikvak 140
                 v+ a  + +++ ++++ L+ lf k i+ ++
  KOO21138.1 156 VRLAAVTLRQNSVTHASLRALFIKRISGSR 185
                 556667778888888889888888777665 PP

  == domain 3  score: -1.8 bits;  conditional E-value: 0.26
     GlutR_N 108 lgQvkeayelakeagtlgkvLerl 131
                 + Qv++a++   e g l+  ++ l
  KOO21138.1 330 VRQVRSAVHHVCEDGELSGCVQAL 353
                 579999999999888877766666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (359 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       403  (0.0224776); expected 358.6 (0.02)
Passed bias filter:                      315  (0.0175693); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.47u 0.26s 00:00:00.73 Elapsed: 00:00:00.42
# Mc/sec: 2576.84
//
Query:       KOO21139.1  [L=334]
Description: hypothetical protein Ctob_001835 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
  ------ inclusion threshold ------
      0.015   14.9   0.0      0.023   14.2   0.0    1.2  1  Glycos_transf_1  Glycosyl transferases group 1


Domain annotation for each model (and alignments):
>> Glycos_transf_1  Glycosyl transferases group 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   0.0   1.3e-06     0.023      73     123 ..     194     246 ..     190     249 .. 0.88

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 1.3e-06
                      CGGGEEECCH.SSSHHHHHHCESEEEEEESS.BSS-HHHHHHHHTT--EEEET CS
  Glycos_transf_1  73 dnviflgevs.redleellknadifvlpsis.EgfGivllEAmaaglpviasn 123
                       n+i l + s + ++ ++++ +d++++     E fG+++ E  a + pv+as+
       KOO21139.1 194 RNIIHLPRTSdVGRISSFIRTCDAMLHARSGgETFGLACAEFSAHNRPVLASA 246
                      5778888888899**************95559*******************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (334 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       300  (0.0167327); expected 358.6 (0.02)
Passed bias filter:                      287  (0.0160076); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.24s 00:00:00.67 Elapsed: 00:00:00.39
# Mc/sec: 2538.43
//
Query:       KOO21140.1  [L=254]
Description: hypothetical protein Ctob_001834 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.2e-06   25.9   0.0    6.4e-06   25.6   0.0    1.1  1  TRAP_alpha  Translocon-associated protein (TRAP), alpha subun


Domain annotation for each model (and alignments):
>> TRAP_alpha  Translocon-associated protein (TRAP), alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.6   0.0   3.6e-10   6.4e-06      40     276 ..      21     253 ..      14     254 .] 0.80

  Alignments for each domain:
  == domain 1  score: 25.6 bits;  conditional E-value: 3.6e-10
  TRAP_alpha  40 dveaedeeveeeeeeeeeeee..eeeedeeelkaspdadttilFtkpvekaeeelpageiveflvgFtnkGsedfvvesleAsfrYpmDfnfyiqnFsa 136
                  v+ae++e+ +e ++++ +    +e+ + ++++++ d++   +   p +  +++l  g +   lv+  n+G++ f +  +   +r + D + y ++   
  KOO21140.1  21 AVSAEESEAPDEVDRTDFSDPslSEDIKLTATESHSDIEPAWIL--PESPDSTKLHIGGTTDLLVAMINNGNKMFNMSHIVVKLRTS-DGTLY-KDLGR 115
                 45556666655555544333345666666677777777776665..46778899999****************************65.66666.799** PP

  TRAP_alpha 137 laynkvvkPkkqatleYsFipaeafagRPfGlvinlaYkdaeGnqfqeavfnetvnivEveeglDgEtlFlYvflaalvvLllvilqqvlesvkkkrva 235
                 ++y + + P++q ++ Y      + +   + l  + +Y d+e   f + v n+  ++v +  + ++    l + l ++ +Ll+++    l + +   ++
  KOO21140.1 116 FEYGQPLGPREQRSFRYPLELDAEETLGTYKLEATAYYNDKEKYPFLNVVVNQSFELVPARPNRESQMQMLQMGLGGVGMLLILASVAKLLTGGGGAAK 214
                 ******************98776666668*****************************************************99999888888777666 PP

  TRAP_alpha 236 kkkkkvEtGtankndvDldWlPketlnelnkssPkqsPrkr 276
                 +k+    +  +    v+ +Wl   tl   +++sPk+   kr
  KOO21140.1 215 AKE-GAAKKAKAPAAVENEWLA-GTLAGTENRSPKKDKSKR 253
                 663.34555667899******6.678788887888654444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (254 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       512  (0.0285571); expected 358.6 (0.02)
Passed bias filter:                      419  (0.02337); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.24s 00:00:00.67 Elapsed: 00:00:00.40
# Mc/sec: 1927.46
//
Query:       KOO21141.1  [L=312]
Description: magnesium transporter nipa2-like protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
   2.5e-111  371.5  17.1     3e-111  371.2  17.1    1.0  1  Mg_trans_NIPA   Magnesium transporter NIPA
    0.00023   21.3   7.1    0.00023   21.3   7.1    4.2  4  EamA            EamA-like transporter family
  ------ inclusion threshold ------
      0.061   12.5   0.2      0.091   11.9   0.2    1.2  1  CNOT1_TTP_bind  CCR4-NOT transcription complex subunit 1 TTP 
        6.5    6.9   8.0        2.1    8.4   2.1    2.4  2  DUF3671         Protein of unknown function


Domain annotation for each model (and alignments):
>> Mg_trans_NIPA  Magnesium transporter NIPA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  371.2  17.1  6.8e-115    3e-111       3     283 ..      20     299 ..      18     303 .. 0.99

  Alignments for each domain:
  == domain 1  score: 371.2 bits;  conditional E-value: 6.8e-115
  Mg_trans_NIPA   3 fliGvlLavssslfigssfilkkkgllrlarkgevrageGGyaylkevlWwaGlltmavGeaanfaayafaPatLvtPLGalsvivsavlasllLk 98 
                    +  G+ La+ ss+fig+sfi+kkkgl+ +++kg +rag+GGy+yl e+lWw G+ltm+ Ge anfaaya+aPa++vtPLGa ++i+sa+la+++L 
     KOO21141.1  20 NRRGIYLALCSSIFIGASFIIKKKGLILASQKG-TRAGAGGYSYLTEPLWWVGMLTMIGGEFANFAAYAYAPAIVVTPLGASTIIISAILANFFLG 114
                    678******************************.************************************************************** PP

  Mg_trans_NIPA  99 ekLkllgllGcllailGstvlvihaPkeeeieslkevadllvdpaflvyvilvvvvvlvlilyveprkGktnilvyitlcsllgsltvisvkalgi 194
                    e L++ g+l c+la+ Gs +l+ haP e   es++e++ l+++p+flvy+ lv++++++l++ ++pr+G+t++l+y+++csl+gsl+v+s+kalgi
     KOO21141.1 115 ESLHACGILACVLAVCGSLILLSHAPAEAPLESVEEIWALATQPQFLVYACLVISLSILLMYRFAPRYGRTHLLIYVLICSLVGSLSVVSCKALGI 210
                    ************************************************************************************************ PP

  Mg_trans_NIPA 195 aikltlaGkaqlkyalawilllvlvicvvlqinyLnkaldifntsivtPvyyvlfttlvivasailfkefleasvddvlgelsGfllvl 283
                    a+kltl G +q+ +  ++ +l +++ c+ +q+nyLnkald+fnt++v+  yyv+ftt +i+as+i++k++ ++++ ++  +++Gf++++
     KOO21141.1 211 ALKLTLRGSNQVFKKETFAFLCCVICCILVQMNYLNKALDTFNTAVVSSTYYVFFTTCTITASMIMYKDWEGQAAGTITVQVAGFMVLM 299
                    *************************************************************************************9875 PP

>> EamA  EamA-like transporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.9   0.1    0.0007       3.1       2      25 ..      22      45 ..      21      51 .. 0.92
   2 !   21.3   7.1   5.2e-08   0.00023      70     136 ..      70     136 ..      62     137 .. 0.95
   3 ?   -3.8   7.4       2.9   1.3e+04      44     102 ..     207     262 ..     157     278 .. 0.43
   4 ?    0.3   0.3      0.16   7.3e+02      11      51 ..     263     303 ..     260     310 .. 0.73

  Alignments for each domain:
  == domain 1  score: 7.9 bits;  conditional E-value: 0.0007
        EamA  2 lgillallaalfwaiyfvlskill 25
                +gi+lal++++f +++f++ k++l
  KOO21141.1 22 RGIYLALCSSIFIGASFIIKKKGL 45
                79*****************99875 PP

  == domain 2  score: 21.3 bits;  conditional E-value: 5.2e-08
        EamA  70 lgllgtvlafllffyalkktsasnaslitslePvftlilsvlllgekltlkqllgivlillGvllil 136
                 +g l ++ + ++ f a  + +a +++++ + + ++++il+ ++lge+l    +l++vl+++G l++l
  KOO21141.1  70 VGMLTMIGGEFANFAAYAYAPAIVVTPLGASTIIISAILANFFLGESLHACGILACVLAVCGSLILL 136
                 6889999999****************************************************99886 PP

  == domain 3  score: -3.8 bits;  conditional E-value: 2.9
        EamA  44 llliiallkegkl.aklslkdwllllllgllgtvlafllffyalkktsasnaslitsleP 102
                 +l i + l+ +   +++++    + +l ++++ +l++  ++y+ k ++  n ++++s+  
  KOO21141.1 207 ALGIALKLTLRGSnQVFKK--ETFAFLCCVICCILVQ--MNYLNKALDTFNTAVVSSTYY 262
                 2222222222222223333..3344555555555555..344444444444444444443 PP

  == domain 4  score: 0.3 bits;  conditional E-value: 0.16
        EamA  11 alfwaiyfvlskillrkvspltltfvrfliagillliiall 51 
                 ++f   ++++s i++++++ +++ +++  +ag+++l+ + +
  KOO21141.1 263 VFFTTCTITASMIMYKDWEGQAAGTITVQVAGFMVLMPYSI 303
                 46666777888899999999999998888777777665544 PP

>> CNOT1_TTP_bind  CCR4-NOT transcription complex subunit 1 TTP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.2     2e-05     0.091      55     139 ..     145     231 ..     135     244 .. 0.78

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 2e-05
  CNOT1_TTP_bind  55 ietLkkfksskskrekevfacmiknLfdE..yrffpqYPekeLkitaqLfGsii.eeqLvsykalgiaLrivLealrkppgskmfefg 139
                     +e ++++    ++ +  v+ac++  L     yrf p+Y ++ L i   L  s++ +  +vs kalgiaL++ L   ++  +++ f f 
      KOO21141.1 145 LESVEEIWALATQPQFLVYACLVISLSILlmYRFAPRYGRTHLLIYV-LICSLVgSLSVVSCKALGIALKLTLRGSNQVFKKETFAFL 231
                     5666666666677777899999988754444************9984.4444444779****************99999888888775 PP

>> DUF3671  Protein of unknown function
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.2   0.4     0.081   3.6e+02      49     109 ..     122     193 ..     117     196 .. 0.60
   2 ?    8.4   2.1   0.00048       2.1      55     106 ..     230     277 ..     218     278 .. 0.84

  Alignments for each domain:
  == domain 1  score: 1.2 bits;  conditional E-value: 0.081
     DUF3671  49 ilpvllpliglivpilfeakskkslkkkelevlatsieklytiffiilvviillv...........liYili 109
                 il ++l ++g+++++     +    + +e+ +lat+ + l +  ++i+ +i l+            liY+li
  KOO21141.1 122 ILACVLAVCGSLILLSHAPAEAPLESVEEIWALATQPQFLVYACLVISLSILLMYrfaprygrthlLIYVLI 193
                 677888888877766544444444555555555555444444444444444444478888888888888887 PP

  == domain 2  score: 8.4 bits;  conditional E-value: 0.00048
     DUF3671  55 pliglivpilfeakskkslkkkelevlatsieklytiffiilvviillvliY 106
                 +l+ +i++il+++     + +k+l++++t++ +  +++f+ +++i   +++Y
  KOO21141.1 230 FLCCVICCILVQM----NYLNKALDTFNTAVVSSTYYVFFTTCTITASMIMY 277
                 6777888888664....5678888999******999**************99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (312 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       967  (0.053935); expected 358.6 (0.02)
Passed bias filter:                      386  (0.0215294); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.47u 0.25s 00:00:00.72 Elapsed: 00:00:00.41
# Mc/sec: 2292.81
//
Query:       KOO21142.1  [L=216]
Description: hypothetical protein Ctob_001837 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
     0.0015   17.6   0.0     0.0064   15.5   0.0    1.8  2  Rif1_N    Rap1-interacting factor 1 N terminal


Domain annotation for each model (and alignments):
>> Rif1_N  Rap1-interacting factor 1 N terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.0   3.6e-07    0.0064     154     208 ..      41      96 ..      20     116 .. 0.85
   2 ?   -0.3   0.0     0.023   4.1e+02     245     280 ..     166     201 ..     161     204 .. 0.83

  Alignments for each domain:
  == domain 1  score: 15.5 bits;  conditional E-value: 3.6e-07
                 HHHHHHHHHHSHHHHHHTHHHHHHHHHHHHHHHHHTTT-HHHH.HTTSBHHHHS-H CS
      Rif1_N 154 lniyrrLleqapslmlahaelWlpdlfsgllssvkdirekaiq.lgleaalalgke 208
                 l  +r Ll+  ++ m ahaelWlp +++ +l+ +k+ r   ++   l aa a+gk+
  KOO21142.1  41 LICLRLLLSADRAAMHAHAELWLPGVVEFVLDELKEARLADAEaARLAAAEATGKK 96 
                 677899*****************************999887776777777777665 PP

  == domain 2  score: -0.3 bits;  conditional E-value: 0.023
                 --HHHHHHHHHHHHHHHH-STTGGGGSHHHHHHHHH CS
      Rif1_N 245 knekivpqiWsvvilLlrkkrkslesweffnewLkl 280
                   e + +++W++v  Ll+  + + ++ + +n++L+l
  KOO21142.1 166 AREEATARLWGAVAELLGPYLGEPDRRDQLNQFLTL 201
                 56788899*********9998888899999999887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (216 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       782  (0.0436165); expected 358.6 (0.02)
Passed bias filter:                      445  (0.0248201); expected 358.6 (0.02)
Passed Vit filter:                        48  (0.00267723); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.24s 00:00:00.68 Elapsed: 00:00:00.40
# Mc/sec: 1614.48
//
Query:       KOO21143.1  [L=226]
Description: hypothetical protein Ctob_001838 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (226 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       305  (0.0170115); expected 358.6 (0.02)
Passed bias filter:                      285  (0.015896); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.42u 0.27s 00:00:00.69 Elapsed: 00:00:00.43
# Mc/sec: 1565.02
//
Query:       KOO21144.1  [L=644]
Description: protein kinase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
      9e-57  192.4   0.0    1.4e-56  191.8   0.0    1.3  1  Pkinase         Protein kinase domain
    7.1e-36  123.8   0.0    1.2e-35  123.0   0.0    1.4  1  Pkinase_Tyr     Protein tyrosine kinase
      0.001   18.5   0.0     0.0065   15.8   0.0    2.1  2  Kinase-like     Kinase-like
     0.0049   15.7   0.0      0.074   11.8   0.0    2.2  2  Pkinase_fungal  Fungal protein kinase
  ------ inclusion threshold ------
       0.12   12.5   3.5        0.1   12.7   1.6    1.8  2  Mito_fiss_reg   Mitochondrial fission regulator
        1.2    9.2   3.2       0.47   10.5   0.2    1.8  2  DUF4715         Domain of unknown function (DUF4715)
        4.1    6.8   8.2       0.18   11.3   2.4    1.5  2  CAP_N           Adenylate cyclase associated (CAP) N terminal


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  191.8   0.0   5.6e-60   1.4e-56       1     258 [.      21     285 ..      21     289 .. 0.88

  Alignments for each domain:
  == domain 1  score: 191.8 bits;  conditional E-value: 5.6e-60
                 EEEEEEEEEESSEEEEEEEETTT.TEEEEEEEEECHCHCHHHHHHHHHHHHHHHHHSCTTB--EEEEEEESSEEEEEEE--TTEBHHHHHH....HHSS CS
     Pkinase   1 yekleklGeGsfGkVykaveket.gkivAvKkikkekakkkkekkvlrEikilkklkhpnivrlyevfeekdelylvleyveggeladlle....rkgs 94 
                 y+kl+ +G+GsfG V  ++++++ g+  ++K++ ++  ++++ +++ +Ei++lk+l+hpni+r++ +fee+ ++ +v+e++ gg+la+l+     +kg+
  KOO21144.1  21 YTKLSLIGRGSFGAVWLVRHTKKgGESLVLKEVVTNGLSQSEVRSAKQEINVLKRLSHPNIIRYVTTFEESGTINIVMEFAAGGDLARLIAkrskEKGA 119
                 788999************9977626889**********99999***********************************************999985555 PP

                 .--HHHHHHHHHHHHHHHHHHHHTT.EE-SS-SGGGEEEETTTEEEE-SGTTSEESSSSCS.BCTTTSCGGGS-HHHHTTSCBSHHHHHHHHHHHHHHH CS
     Pkinase  95 .lseeeakkiakqilegleylHskg.iiHrDlKpeNiLidekgelKitDFGlakelesssk.ltsfvgtseYlAPEvlkeneyskkvDvWslGvilyel 190
                  ++e+e++++a+q++++leylH++  ++HrD+Kp+N++++  g+++++DFGl+k l++    ++ +vgt+ Y++PE+  +++y++++DvW+ G+++ye 
  KOO21144.1 120 rFTETEVRRYATQLASALEYLHREVyLLHRDIKPKNVFLSGVGDVRLGDFGLSKVLSKVDGvAEMQVGTPLYMSPELAAGKPYDRNADVWAFGCTIYEA 218
                 6*********************77659******************************98878999********************************** PP

                 HHSS-STTTSSHHHHHHHHHHTHHHHHHHCTSHH...HH.HTTS-HHHHHHHHHHT-SSGCCSTTHHHH CS
     Pkinase 191 ltgkppfsgekgkekvekeldqlekilkilgetkeklpe.aseiseeakdllkkllkkdpkkRltaeel 258
                 ++  pp+++ ++ e   +  ++   +l+ ++  +++++  +++ s e+ d+++kll+k+p++Rl  + l
  KOO21144.1 219 MSFVPPWNELTTPEGGPEGGMK--GLLMHIRAHELDVEAlRTNYSLEMVDVVRKLLAKKPSERLPLKVL 285
                 ********77776655555555..33333444456665515567*******************977655 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  123.0   0.0   4.9e-39   1.2e-35       6     212 ..      26     231 ..      22     289 .. 0.78

  Alignments for each domain:
  == domain 1  score: 123.0 bits;  conditional E-value: 4.9e-39
                  EEEEESSEEEEEEEEETTTTSSEEEEEEEEE.STTSSHHHHHHHHHHHHHHHTS-BTTB--EEEEEESSSSEEEEEE--TTEBHHHHHHHT...CTTT CS
  Pkinase_Tyr   6 klGeGafGkVvegtlkgekekkevkVavKtl.keeateeekeelleeakimkklkhpnivkllgvctkeepllivteyvkgGdLlkfLrkk...ekek 99 
                   +G+G+fG V+  + +   +k  ++ ++K + +++ +++e ++  +e++++k+l+hpni++++    +++++ iv+e+++gGdL   + k+   + ++
   KOO21144.1  26 LIGRGSFGAVWLVRHT---KKGGESLVLKEVvTNGLSQSEVRSAKQEINVLKRLSHPNIIRYVTTFEESGTINIVMEFAAGGDLARLIAKRskeKGAR 120
                  69*********99998...5555666667654999999**************************************************9985556678 PP

                  SBHHHHHHHHHHHHHHHHHHHHTT.EEEST-SGGGEEEEETTEEEE-STTTHEETTTSSEEEETTSSTSGGGGS-HHHHHHSEEEHHHHHHHHHHHHH CS
  Pkinase_Tyr 100 ltlkdllsfalqvAkGmeyLeskk.lvHrdlaarNvLlsenkvvkisDfGLardiekddeyvkkeeaklpvkWmapEslkekkftsksDvWsfGvllw 196
                  +t +++ ++a+q+A+++eyL+++  l+Hrd+  +Nv+ls    v+++DfGL++ + ++ + v +e +     +m+pE    k +  ++DvW+fG +++
   KOO21144.1 121 FTETEVRRYATQLASALEYLHREVyLLHRDIKPKNVFLSGVGDVRLGDFGLSKVL-SKVDGV-AEMQVGTPLYMSPELAAGKPYDRNADVWAFGCTIY 216
                  9999*****************987378**************************99.333334.4445555569************************* PP

                  HHHTTSSGTTTTSHHH CS
  Pkinase_Tyr 197 Eiftlgespypglkne 212
                  E +++   p+++l++ 
   KOO21144.1 217 EAMSF-VPPWNELTTP 231
                  ***94.5666666544 PP

>> Kinase-like  Kinase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   0.0      0.26   6.7e+02      16      65 ..      23      72 ..      19      83 .. 0.73
   2 !   15.8   0.0   2.6e-06    0.0065     143     257 ..     124     233 ..      93     260 .. 0.71

  Alignments for each domain:
  == domain 1  score: -0.6 bits;  conditional E-value: 0.26
  Kinase-like 16 rgellkkgdrsvvfevkdqetgeplavkvfllpseaskkdlerlkeqela 65
                 + +l+++g +++v++v+  ++g +  v   ++++  s++++   k++   
   KOO21144.1 23 KLSLIGRGSFGAVWLVRHTKKGGESLVLKEVVTNGLSQSEVRSAKQEINV 72
                 67899***********9998876666666667777777777766665544 PP

  == domain 2  score: 15.8 bits;  conditional E-value: 2.6e-06
  Kinase-like 143 tiarlllTlqlirlaanLqak.glvhgkftvdnllldekgglmlggftaLvragtkvvl.seve...kgfaPpEllgsrggytrknktkmthkldaWq 235
                  t  r + T ql     +L+ +  l+h +++++n++l   g + lg+f+ L ++  kv   +e++     +  pEl + +  y r        + d+W+
   KOO21144.1 124 TEVRRYAT-QLASALEYLHREvYLLHRDIKPKNVFLSGVGDVRLGDFG-LSKVLSKVDGvAEMQvgtPLYMSPELAAGKP-YDR--------NADVWA 210
                  44444543.5666677787652699**********************7.5555444432266663334589999998833.454........68**** PP

  Kinase-like 236 lGlviyriwclklPlt.lateea 257
                   G +iy   +++ P + l t+e+
   KOO21144.1 211 FGCTIYEAMSFVPPWNeLTTPEG 233
                  ***********999651455665 PP

>> Pkinase_fungal  Fungal protein kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.2   0.0     0.047   1.2e+02     152     194 ..      25      76 ..      21     117 .. 0.70
   2 !   11.8   0.0   2.9e-05     0.074     318     387 ..     136     198 ..     129     208 .. 0.86

  Alignments for each domain:
  == domain 1  score: 1.2 bits;  conditional E-value: 0.047
  Pkinase_fungal 152 aivgRgT..tcwrarkegergkeyvvKdsWr.....daerk..sEaelLkka 194
                     +++gRg   ++w +r++++ g+++v+K + +     ++ r+  +E ++Lk+ 
      KOO21144.1  25 SLIGRGSfgAVWLVRHTKKGGESLVLKEVVTnglsqSEVRSakQEINVLKRL 76 
                     6788886447*******99999999998766222222333223455555555 PP

  == domain 2  score: 11.8 bits;  conditional E-value: 2.9e-05
  Pkinase_fungal 318 ghrsLflkagiLHrDiSenNilitdskkegerkglLiDLDlakelsddssesgarertGTleFmaievlk 387
                     +++ L+++  +LHrDi  +N+ +      g     L D+ l k ls++  + +a+ ++GT+ +m+ e+  
      KOO21144.1 136 ALEYLHREVYLLHRDIKPKNVFLS-----GVGDVRLGDFGLSKVLSKV--DGVAEMQVGTPLYMSPELAA 198
                     6788999999**************.....888999***********75..555679********988765 PP

>> Mito_fiss_reg  Mitochondrial fission regulator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.0       1.2   3.1e+03     166     205 ..     277     317 ..     255     322 .. 0.51
   2 ?   12.7   1.6     4e-05       0.1     137     212 ..     511     597 ..     507     617 .. 0.56

  Alignments for each domain:
  == domain 1  score: -2.0 bits;  conditional E-value: 1.2
  Mito_fiss_reg 166 ssaspslep.sss..lppppppppppippespsvldssnsaie 205
                    s+  p l+  +++   +p ppp+   ++ e++  ld++n+a+ 
     KOO21144.1 277 SERLP-LKVlLTQftEAPKPPPSWG-LSAEAQAALDAANAAVA 317
                    33222.2112222322344443332.24567777777777665 PP

  == domain 2  score: 12.7 bits;  conditional E-value: 4e-05
  Mito_fiss_reg 137 AkIVaaqeasnssaslels.dtpdllepksssaspslep..ssslpppppppppp.........ippespsvldssnsaielikqrrg 212
                    A++Va +ea++++a+ +l+ ++ d+++   ++++++ +    +sl+p+pp pppp         i +++ ++++++   ++l   +r+
     KOO21144.1 511 AALVARDEAAAKAAEEALTdEATDVMQALAEQKAAEEAAaaAASLTPSPP-PPPPdnaarvrqrIVETMRKGIQENRDRTDLADGERK 597
                    89999999999955554441444455444444444442222333434444.3333233333333255666666666666666655554 PP

>> DUF4715  Domain of unknown function (DUF4715)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.7   0.4       4.4   1.1e+04      74      87 ..     526     539 ..     508     550 .. 0.50
   2 ?   10.5   0.2   0.00018      0.47      92     130 ..     565     603 ..     563     608 .. 0.93

  Alignments for each domain:
  == domain 1  score: -3.7 bits;  conditional E-value: 4.4
     DUF4715  74 hrledaycemsral 87 
                   l d   ++ +al
  KOO21144.1 526 EALTDEATDVMQAL 539
                 23344444444444 PP

  == domain 2  score: 10.5 bits;  conditional E-value: 0.00018
     DUF4715  92 eqaarvkqrlreeedrgivrnkvltfllprekqlrehck 130
                 ++aarv+qr+ e   +gi  n+  t l   e+++ eh +
  KOO21144.1 565 DNAARVRQRIVETMRKGIQENRDRTDLADGERKMLEHMQ 603
                 579*********************************986 PP

>> CAP_N  Adenylate cyclase associated (CAP) N terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.3   0.3       3.8   9.7e+03     249     264 ..     292     305 ..     276     315 .. 0.55
   2 ?   11.3   2.4   6.9e-05      0.18     226     260 ..     533     568 ..     520     589 .. 0.61

  Alignments for each domain:
  == domain 1  score: -4.3 bits;  conditional E-value: 3.8
                 ..XXXXXXXX.....X CS
       CAP_N 249 pPpPpPppasvfeees 264
                 +  P+Ppp+   ++e+
  KOO21144.1 292 A--PKPPPSWGLSAEA 305
                 2..3333433333333 PP

  == domain 2  score: 11.3 bits;  conditional E-value: 6.9e-05
                 BE.......SSC--XXXXXXX.....XXXXXXXX.. CS
       CAP_N 226 kdaeealkaaaaaasaaaagg.pppPpPpPppasvf 260
                 +d+ +al++++aa++aaaa++   p+pPpPpp +++
  KOO21144.1 533 TDVMQALAEQKAAEEAAAAAAsLTPSPPPPPPDNAA 568
                 455666665566666666555455545555554433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (644 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1046  (0.0583412); expected 358.6 (0.02)
Passed bias filter:                      546  (0.0304535); expected 358.6 (0.02)
Passed Vit filter:                        49  (0.002733); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.65u 0.28s 00:00:00.93 Elapsed: 00:00:00.44
# Mc/sec: 4382.82
//
Query:       KOO21145.1  [L=952]
Description: ATP-dependent RNA helicase dhx8 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    5.4e-24   84.4   0.0      1e-23   83.5   0.0    1.5  1  OB_NTP_bind      Oligonucleotide/oligosaccharide-binding (OB)
    8.1e-23   80.8   0.0    1.9e-22   79.6   0.0    1.7  1  HA2              Helicase associated domain (HA2)
    7.1e-06   25.9   0.2    2.1e-05   24.4   0.2    1.8  1  DEAD             DEAD/DEAH box helicase
    8.4e-06   26.0   0.0    1.6e-05   25.1   0.0    1.4  1  S1               S1 RNA binding domain
    2.4e-05   24.6   0.1    5.4e-05   23.5   0.1    1.6  1  AAA_22           AAA domain
    0.00027   20.7   0.0    0.00052   19.8   0.0    1.4  1  AAA_30           AAA domain
    0.00064   20.1   0.2     0.0016   18.8   0.2    1.7  1  AAA_19           AAA domain
     0.0086   15.2   0.1      0.017   14.2   0.1    1.4  1  T2SSE            Type II/IV secretion system protein
  ------ inclusion threshold ------
      0.037   14.1   0.1       0.33   11.0   0.1    2.3  1  AAA_14           AAA domain
      0.037   13.3   0.0      0.058   12.6   0.0    1.2  1  DUF2075          Uncharacterized conserved protein (DUF2075)
       0.04   13.9   0.1      0.077   13.0   0.1    1.4  1  Flavi_DEAD       Flavivirus DEAD domain
      0.045   13.2   0.2       0.11   12.0   0.2    1.6  1  PhoH             PhoH-like protein
      0.049   14.1   0.4       0.87   10.1   0.2    2.6  2  ABC_tran         ABC transporter
      0.054   13.4   0.2        1.2    9.1   0.1    2.4  2  Microtub_bd      Microtubule binding
      0.072   13.2   0.1       0.35   11.0   0.0    2.1  2  Sigma54_activ_2  Sigma-54 interaction domain
      0.085   12.0   0.0       0.17   11.0   0.0    1.4  1  DAP3             Mitochondrial ribosomal death-associated pro
      0.091   12.4   0.1       0.17   11.5   0.1    1.4  1  SRP54            SRP54-type protein, GTPase domain
       0.16   11.5   0.1       0.32   10.5   0.1    1.4  1  AAA_7            P-loop containing dynein motor region
       0.17   11.3   0.1       0.31   10.5   0.1    1.4  1  UvrD-helicase    UvrD/REP helicase N-terminal domain


Domain annotation for each model (and alignments):
>> OB_NTP_bind  Oligonucleotide/oligosaccharide-binding (OB)-fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   83.5   0.0   1.1e-26     1e-23       1      82 [.     837     913 ..     837     914 .. 0.96

  Alignments for each domain:
  == domain 1  score: 83.5 bits;  conditional E-value: 1.1e-26
                  HHHHHHHHHTTCEEEEEETTCCEEETTTCEEEEE-TTSTTTTT...TSSSEEEEEEEEESSSEEEEEEEEE-HHHHHHHSTT CS
  OB_NTP_bind   1 lraillaGlypqiarkdpskkdyktartktrvfihpsSvlaknekekepewvvytelvettklylrdltaidpawLllfagq 82 
                  +r+++++G++++ a+kdp++  ykt+ +++ v+ihpsS l++     +pew++y+elv ttk y+r+++ i+p wLl++a+ 
   KOO21145.1 837 VRKAITSGFFMHAAKKDPQEG-YKTMDEGQVVYIHPSSSLFN----RNPEWLIYHELVLTTKEYMREIISIEPKWLLELAPR 913
                  69************9999997.****99*************8....**********************************96 PP

>> HA2  Helicase associated domain (HA2)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   79.6   0.0     2e-25   1.9e-22       1     107 [.     691     778 ..     691     814 .. 0.89

  Alignments for each domain:
  == domain 1  score: 79.6 bits;  conditional E-value: 2e-25
         HA2   1 AlelLvalgALdeegnlTelGrkmaelPlsprlakmLlaaaeleegcldevitivAalsveeifleeneeekeeeeeeeekakkkrkeeekarrklahk 99 
                 A+e L+algALdeeg lT lGr+mae+Pl+p l+k+L+ ++el  gc dev+t+ A+lsv++i  +++e++               ++++++r+k+ ++
  KOO21145.1 691 AMESLFALGALDEEGLLTLLGRRMAEFPLEPPLSKILIQSVEL--GCSDEVLTVTAMLSVQNIWYRPKEKQ---------------AQADQKRAKFFQP 772
                 899*************************************777..**********************9754...............3444445555556 PP

         HA2 100 daegDhlt 107
                 +  gDhlt
  KOO21145.1 773 E--GDHLT 778
                 6..88887 PP

>> DEAD  DEAD/DEAH box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.4   0.2   2.2e-08   2.1e-05       4     171 ..     336     488 ..     333     492 .. 0.76

  Alignments for each domain:
  == domain 1  score: 24.4 bits;  conditional E-value: 2.2e-08
                 HHHHHHHHHTTCEEEEEESTTSSHHHHHHHHHHHHHHHSTTSTS-EEEEEESSHHHHHHHHHHHHHHTTTSTSEEEEEETTSSHHHHHHHHH.TTCSEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxx RF
        DEAD   4 QaeaiplilgggdvlvaaeTGsGKTlaflipvlqivyetkgktgpkalivePtreLaeqtlnnlkkfkkyidlrvlliiggvaardqlskld.ngvdiv 101
                  +e ++++ +++ ++v +eTGsGKT+ +   + ++ +    +++  + +  P r  a  +++++ + +    +r+   +g   ++   ++    ++ i 
  KOO21145.1 336 KQELVNAVTENQVLVVIGETGSGKTTQMTQYMAEAGF----TSKGIIACTQPRRVAAMSVAKRVAEEFG---CRLGQEVG---YSIRFEDCTsPETVIK 424
                 56788999999999************99888887764....4555788999**********99987777...34443333...4444555531348899 PP

                 EEEHHHHHHHH.HCTSSHCTTEEEEEEETHHHHHHTTTHHHHHHHHHHSHHHCTTSTTTSEEEEEESSBS.H CS
                 xxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.x RF
        DEAD 102 vgtpgrlddll.stgklnlsqvrflVlDEadrlldqgfsdfinrilnqlpqitcdgklqrqvivlSATlp.k 171
                 ++t g+l++ +  + +  l + +++ lDEa++       d +  +l+ l +  +d k    +i+ SATl  +
  KOO21145.1 425 YMTDGMLLREClVDTE--LTRYSLIMLDEAHERTIH--TDVLFGLLKGLLKRRKDLK----LICTSATLDaE 488
                 9********5524444..9************99886..8999999999965555555....*******9855 PP

>> S1  S1 RNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.1   0.0   1.7e-08   1.6e-05       4      61 ..       7      66 ..       4      72 .. 0.94

  Alignments for each domain:
  == domain 1  score: 25.1 bits;  conditional E-value: 1.7e-08
                TTCEEEEEEEEEETTEEEEEET...TTEEEEEEGGGSSSSCEESCHHHCEETTEEEEEEEE CS
          S1  4 kgevveGeVtsvtkgGafVelg...ngvegfvpaselsrdarvedpdevlkvGdevkvkvl 61
                 g v+ G+V +v ++G fV+l+   +++eg++++s+l     +  p + +k G++ ++kvl
  KOO21145.1  7 PGRVYRGTVANVLDFGCFVQLEgirGKAEGLCHVSHLGGP-QGGRPQDLVKRGQRCYAKVL 66
                699******************99999************97.*******************8 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.5   0.1   5.8e-08   5.4e-05       5     126 ..     346     479 ..     343     490 .. 0.74

  Alignments for each domain:
  == domain 1  score: 23.5 bits;  conditional E-value: 5.8e-08
      AAA_22   5 agilvvtGesGtGKTtllrrlleqldeeakaeeerpevvfvtlpsstsskdllrellralglelka..................erlsseellealeqa 85 
                  ++lvv+Ge+G+GKTt + +++ ++         +++++ +t p      ++++++++++g +l                    +         ++++ 
  KOO21145.1 346 NQVLVVIGETGSGKTTQMTQYMAEAGF------TSKGIIACTQPRRVAAMSVAKRVAEEFGCRLGQevgysirfedctspetviK---------YMTDG 429
                 689*********************842......4777777777777799999*********999989999999995555444432.........44444 PP

      AAA_22  86 lrarav........ielliiDEaqhlr..seealeeLrsllnlsrkgvqli 126
                 +  r           +l+++DEa+  +  ++ ++  L+ ll+ +rk+++li
  KOO21145.1 430 MLLREClvdteltrYSLIMLDEAHERTihTDVLFGLLKGLLK-RRKDLKLI 479
                 4433334455566668********954455777777788777.78888777 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.8   0.0   5.5e-07   0.00052      11      98 ..     341     453 ..     335     479 .. 0.68

  Alignments for each domain:
  == domain 1  score: 19.8 bits;  conditional E-value: 5.5e-07
      AAA_30  11 ealltsgdrvavltGpAGtGKttalkal.rea.weaag.......grviglAptgkaAkvLa..................eelgieastiakllkrlk. 81 
                 + ++t++ +v v+ G  G+GKtt ++++ +ea ++++g       +rv++++  +++A++ +                   e+ i+ +t          
  KOO21145.1 341 N-AVTEN-QVLVVIGETGSGKTTQMTQYmAEAgFTSKGiiactqpRRVAAMSVAKRVAEEFGcrlgqevgysirfedctsPETVIKYMTDG------Ml 431
                 3.44455.4*****************99755514555799999999999999999999998844443333333222111112223444444......14 PP

      AAA_30  82 .....grarlepgtllivDEag 98 
                        ++l++ +l++ DEa 
  KOO21145.1 432 lreclVDTELTRYSLIMLDEAH 453
                 5555555889999999999985 PP

>> AAA_19  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.8   0.2   1.7e-06    0.0016       4     132 ..     339     476 ..     336     480 .. 0.59

  Alignments for each domain:
  == domain 1  score: 18.8 bits;  conditional E-value: 1.7e-06
      AAA_19   4 ave.alkekvllvtaGpGtGKTrvlkhivallvelggvkpeeillvaftgr.Aakelrerlaalgae....................atTiHrlalldf 80 
                  v+  ++++vl+v++  G+GKT+ +++ +a++  +     + i++++  +r Aa+ +++r+a   +e                     +T+ +     +
  KOO21145.1 339 LVNaVTENQVLVVIGETGSGKTTQMTQYMAEAGFTS----KGIIACTQPRRvAAMSVAKRVA---EEfgcrlgqevgysirfedctsPETVIKY----M 426
                 565568999**************9999888776655....3344444333325555555552...22222343346666666643332232222....2 PP

      AAA_19  81 ddlltealelleeaeeekklqeeellivDEfqd..vd.elqyrLlkallgekkkl 132
                 +d +     ll+e   +++l++  l++ DE+ +  +  ++ + Llk ll+++k+l
  KOO21145.1 427 TDGM-----LLRECLVDTELTRYSLIMLDEAHErtIHtDVLFGLLKGLLKRRKDL 476
                 2222.....4445556778855559999999763355677888888888777666 PP

>> T2SSE  Type II/IV secretion system protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.2   0.1   1.8e-05     0.017     118     155 ..     335     372 ..     296     391 .. 0.82

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 1.8e-05
       T2SSE 118 iaevlrkavrerglilvsGgTgsGKttllyallkeink 155
                 +++ l +av+e+++++v G TgsGKtt +   ++e   
  KOO21145.1 335 LKQELVNAVTENQVLVVIGETGSGKTTQMTQYMAEAGF 372
                 567788999******************99877776655 PP

>> AAA_14  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.1   0.00035      0.33       2     100 ..     346     483 ..     345     494 .. 0.71

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00035
      AAA_14   2 rkilvitGaRrvGKTtllkqlikell.........vkkesilyinldderd.................kkladpekllelilek..lke........ek 64 
                 +++lv+ G   +GKTt + q++ e           ++++++  +++ +                    ++ + pe++++++ +   l +         +
  KOO21145.1 346 NQVLVVIGETGSGKTTQMTQYMAEAGftskgiiacTQPRRVAAMSVAKRVAeefgcrlgqevgysirfEDCTSPETVIKYMTDGmlL-ReclvdtelTR 443
                 7899******************99987777777776777777777666444677888887777655443333444555555554322.24677777777 PP

      AAA_14  65 ktylflDEiqev....pewekalkslvdegknldvivtGS 100
                  ++++lDE++e     + ++  lk+l++++k+l++i+t  
  KOO21145.1 444 YSLIMLDEAHERtihtDVLFGLLKGLLKRRKDLKLICTSA 483
                 8889999999985555667788888888999999999965 PP

>> DUF2075  Uncharacterized conserved protein (DUF2075)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   6.2e-05     0.058       2      98 ..     347     453 ..     346     465 .. 0.91

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 6.2e-05
     DUF2075   2 avvlVtGvaGtGKtvvllnllael.......eddeeertavylsvNhplvlvlrealakkeekkkkkeafeklssfinnlsef...kkaeekkeepked 90 
                 +v++V G++G+GKt  + + +ae+           + r+++ +sv ++  +    +l ++   + + e+ + ++++i+ ++ +   ++   + e  +  
  KOO21145.1 347 QVLVVIGETGSGKTTQMTQYMAEAgftskgiIACTQPRRVAAMSVAKRVAEEFGCRLGQEVGYSIRFEDCTSPETVIKYMTDGmllRECLVDTELTRYS 445
                 799*********************9877777666699999***********999999999977778899************999*99999999****** PP

     DUF2075  91 vvivDEAh 98 
                 ++  DEAh
  KOO21145.1 446 LIMLDEAH 453
                 ******** PP

>> Flavi_DEAD  Flavivirus DEAD domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.1   8.2e-05     0.077       5     105 ..     347     453 ..     343     486 .. 0.75

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 8.2e-05
                 -EEEEE--TTS-TTTTHHHHHHHHHHHTT--EEEEESSHHHHHHHHHHTT.......TS-EEE-------------SEEEEEHHHHHHHHHHT------ CS
  Flavi_DEAD   5 kltvldlhPGaGktrkvlpelvkeaierrlrtlvLaPtrvvlaemeealk.......glevryktsavkeektgrelvdvmchatftkrllspvrkkny 96 
                 ++ v+    G+Gkt ++   + ++ ++++       P rv +  +++ ++       g+ev y+ + +++ ++ + ++  m    + +  l +++ ++y
  KOO21145.1 347 QVLVVIGETGSGKTTQMTQYMAEAGFTSKGIIACTQPRRVAAMSVAKRVAeefgcrlGQEVGYSIR-FEDCTSPETVIKYMTDGMLLRECLVDTELTRY 444
                 5556666789*****999999999999999999999999987777665541111222345555444.457788999*********************** PP

                 SEEEEETTT CS
  Flavi_DEAD  97 eliimDeah 105
                  li++Deah
  KOO21145.1 445 SLIMLDEAH 453
                 ********* PP

>> PhoH  PhoH-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.2   0.00011      0.11      10      35 ..     337     362 ..     331     381 .. 0.83

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 0.00011
                 HHHHHHHHH-SEEEEE--TTSSTTHH CS
        PhoH  10 keylealkkndivfaiGpaGtGKtyl 35 
                 +e+++a+++n+++++iG++G+GKt  
  KOO21145.1 337 QELVNAVTENQVLVVIGETGSGKTTQ 362
                 6789*******************964 PP

>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.2   0.00092      0.87       8      28 ..     343     363 ..     337     400 .. 0.84
   2 ?    1.0   0.0       0.6   5.7e+02     101     135 ..     422     452 ..     409     454 .. 0.84

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.00092
                 EETTSEEEEEESTTSSHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran   8 lkegekvaivGenGaGKStLl 28 
                 + e+++++++Ge+G+GK+t +
  KOO21145.1 343 VTENQVLVVIGETGSGKTTQM 363
                 77899*************965 PP

  == domain 2  score: 1.0 bits;  conditional E-value: 0.6
                 GESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEEST CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran 101 vvksspssLSgGqkqrvalarallkkpkllllDEp 135
                 v+    + +  G+  r +l+ + l++ +l++lDE+
  KOO21145.1 422 VI----KYMTDGMLLRECLVDTELTRYSLIMLDEA 452
                 44....78999***********************8 PP

>> Microtub_bd  Microtubule binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.1   0.1    0.0013       1.2      81     108 ..     344     371 ..     296     389 .. 0.81
   2 ?    1.6   0.0      0.25   2.4e+02      90     119 ..     626     656 ..     624     667 .. 0.84

  Alignments for each domain:
  == domain 1  score: 9.1 bits;  conditional E-value: 0.0013
                  T--EEEEEEES................S CS
  Microtub_bd  81 gynvcifaygqTGsGKtyTmegeeeeag 108
                    n  ++ +g+TGsGKt  m++  +eag
   KOO21145.1 344 TENQVLVVIGETGSGKTTQMTQYMAEAG 371
                  46888999***********998555555 PP

  == domain 2  score: 1.6 bits;  conditional E-value: 0.25
                  ES.................ST-HCHHHHHHH CS
  Microtub_bd  90 gqTGsGKtyTmeg.eeeeagmipraveeife 119
                  g+TG GK y + +    +++m+p +v ei +
   KOO21145.1 626 GRTGPGKCYRLYTeAAYRNEMLPTSVPEIQR 656
                  89*********99667788999999888865 PP

>> Sigma54_activ_2  Sigma-54 interaction domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   0.00037      0.35       3      54 ..     328     380 ..     327     398 .. 0.81
   2 ?   -2.0   0.0       3.7   3.5e+03      90     109 ..     466     484 ..     458     490 .. 0.73

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00037
                      --HHHHHHHHHHHHHHT-SS-EEEEEETT--HHH.HHHCC--TTS-EE--SST CS
  Sigma54_activ_2   3 asaaiqelkerLeqaaqsklpvfltGekGsgkel.vArlLhknsgpwleifvv 54 
                      as +i +lk++L +a+ ++ ++ ++Ge Gsgk++ + +++++ + +   i  +
       KOO21145.1 328 ASLPIYALKQELVNAVTENQVLVVIGETGSGKTTqMTQYMAEAGFTSKGIIAC 380
                      58899**************************9863678887777666666655 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 3.7
                      HHHHHHHTTTT-EEEEEEEE CS
  Sigma54_activ_2  90 lellakaeksslrlVstssk 109
                      l+ l k  +++l+l++ts++
       KOO21145.1 466 LKGLLKR-RKDLKLICTSAT 484
                      4444444.799******974 PP

>> DAP3  Mitochondrial ribosomal death-associated protein 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   0.00018      0.17      20      52 ..     343     376 ..     326     383 .. 0.76

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00018
                 SS---EEEEE-SSSSSTTTTHHHHHHHG.GGS-- CS
        DAP3  20 kkkvkrlvltGekgsGKSvlLlqalayA.lekgw 52 
                  ++++ lv+ Ge+gsGK++ ++q +a A ++++ 
  KOO21145.1 343 VTENQVLVVIGETGSGKTTQMTQYMAEAgFTSKG 376
                 4566778999***************965255555 PP

>> SRP54  SRP54-type protein, GTPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.1   0.00018      0.17       2      58 ..     347     402 ..     346     416 .. 0.81

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.00018
                 EEEEEEESTTSSHHHHHHHHHHHHHHT..TS-EEEEEESTSSTTHHHHHHHHHHHTTEE CS
       SRP54   2 nvillvGlqGaGKTttlaKLaallkke..gkkvllvaaDtfRaaAveQLktlaeklgvp 58 
                 +v++++G +G+GKTt +++   ++ +     k +++++   R+aA+   k +ae+ g +
  KOO21145.1 347 QVLVVIGETGSGKTTQMTQ---YMAEAgfTSKGIIACTQPRRVAAMSVAKRVAEEFGCR 402
                 68999**********8765...455554567889999999*****99999999888765 PP

>> AAA_7  P-loop containing dynein motor region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.1   0.00034      0.32      29      57 ..     342     370 ..     334     401 .. 0.84

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00034
       AAA_7  29 llknkkpvllvGptGtGKtviikdllkkl 57 
                  +++++ ++++G+tG+GKt+ +++++ + 
  KOO21145.1 342 AVTENQVLVVIGETGSGKTTQMTQYMAEA 370
                 46777888999*************99875 PP

>> UvrD-helicase  UvrD/REP helicase N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.1   0.00033      0.31       4      98 ..     338     458 ..     335     472 .. 0.67

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00033
                    HHHHHHHS-SSEEEEEE-TTSSHHHHHHHHHHHH.HHTSS....STGGGEEEEESSHHHHHHHHHHHHH.........................HH CS
  UvrD-helicase   4 eqreaiaslggpilveAsAGsGKTfvlaerilrl.ikeee....iepdrilvvTFTnkAaeElkeRiee.........................al 69 
                    e  +a++  ++ ++v+   GsGKT+ +++ +++   + ++    ++p+r+ ++   ++ aeE   R+ +                         +l
     KOO21145.1 338 ELVNAVTE-NQVLVVIGETGSGKTTQMTQYMAEAgFTSKGiiacTQPRRVAAMSVAKRVAEEFGCRLGQevgysirfedctspetvikymtdgmLL 432
                    55566666.9999999**************998633333344446777788888888888888888777777777666666666666555544322 PP

                    HHCCHHCTT-HHHHHHHHHCTTSEEEEHH CS
  UvrD-helicase  70 kkaeqessdderlrlalqnlseanisTlH 98 
                    ++ +    d e  r +l  l+ea+  T+H
     KOO21145.1 433 RECL---VDTELTRYSLIMLDEAHERTIH 458
                    2221...2333445566666777777776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (952 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       559  (0.0311785); expected 358.6 (0.02)
Passed bias filter:                      489  (0.0272742); expected 358.6 (0.02)
Passed Vit filter:                        89  (0.00496402); expected 17.9 (0.001)
Passed Fwd filter:                        19  (0.00105974); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              19  [number of targets reported over threshold]
# CPU time: 0.75u 0.29s 00:00:01.04 Elapsed: 00:00:00.43
# Mc/sec: 6636.77
//
Query:       KOO21146.1  [L=416]
Description: serine o-acetyltransferase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    7.2e-14   52.0   0.2    6.2e-13   49.0   0.2    2.2  1  SATase_N   Serine acetyltransferase, N-terminal
    1.6e-09   37.1  10.2    3.2e-05   23.5   1.6    2.8  2  Hexapep    Bacterial transferase hexapeptide (six repeats)
    8.6e-08   31.8   9.4     0.0016   18.2   4.0    3.4  3  Hexapep_2  Hexapeptide repeat of succinyl-transferase


Domain annotation for each model (and alignments):
>> SATase_N  Serine acetyltransferase, N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.0   0.2     1e-16   6.2e-13       1     104 [.     114     233 ..     114     234 .. 0.88

  Alignments for each domain:
  == domain 1  score: 49.0 bits;  conditional E-value: 1e-16
                 HHHHHHHHHHHHHHH-GGGHHHHHHHTTT-SSHHHHHHHHHHHHH-BSS....S-HHHHHHHHHHHHHH-T.............HHHHHHHHHHHHHHH CS
    SATase_N   1 vWeslraeaeeaaekepllasflyatilsheslesaLaflLanklasst....lsaeqlrelfeealeadp.............eiveaaraDlkAvle 82 
                 v+++lr+ea ++     + as+   +il+h+sl +a+a++L+nkl+ +     + a+++  +++ea +a++               ++++++Dl  vl 
  KOO21146.1 114 VFNTLRREAGDL-LGSKMTASLASLCILKHASLPEAVAATLSNKLHPPLpgsfVGASTVGGALAEATTAEEalrstmvrvlsgaAARRSVVSDLVKVLV 211
                 578899999655.56679999************************986644447788888888888887779***********999************* PP

                 H-TT---THHHHHH-HHHHHHH CS
    SATase_N  83 rDpAcksylepllyfKGFhAlq 104
                  DpA++ +l+p+l+fKGFhAl 
  KOO21146.1 212 VDPAAEGLLQPMLFFKGFHALA 233
                 ********************95 PP

>> Hexapep  Bacterial transferase hexapeptide (six repeats)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.6   1.7   3.9e-07    0.0023       1      35 [.     271     307 ..     265     308 .. 0.94
   2 !   23.5   1.6   5.3e-09   3.2e-05       1      36 []     319     354 ..     319     354 .. 0.95

  Alignments for each domain:
  == domain 1  score: 17.6 bits;  conditional E-value: 3.9e-07
                 TEEEETTEEE-T..TEEEETTEEE-TTEEEETTEEEE CS
     Hexapep   1 stvIGsnvlIgp..faviggnVkIGdnvkIgagvvig 35 
                 +++IG++v++++  ++vig+ +++G++v+  +gv++g
  KOO21146.1 271 GATIGNGVMLDHasGVVIGATAIVGSDVYMLHGVTLG 307
                 579999999999*********************9997 PP

  == domain 2  score: 23.5 bits;  conditional E-value: 5.3e-09
                 TEEEETTEEE-TTEEEETTEEE-TTEEEETTEEEES CS
     Hexapep   1 stvIGsnvlIgpfaviggnVkIGdnvkIgagvvigg 36 
                 +++IGs v++g++a ++g++++ d++++ ag+ +++
  KOO21146.1 319 HPTIGSSVILGAGAAVLGDITVADGCTVSAGAIVTK 354
                 689*****************************9985 PP

>> Hexapep_2  Hexapeptide repeat of succinyl-transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.4   0.0    0.0006       3.6      15      33 ..     261     281 ..     258     282 .. 0.82
   2 !    7.5   0.2   0.00058       3.5       2      21 ..     286     307 ..     285     308 .. 0.93
   3 !   18.2   4.0   2.7e-07    0.0016       3      34 .]     321     354 ..     321     354 .. 0.90

  Alignments for each domain:
  == domain 1  score: 7.4 bits;  conditional E-value: 0.0006
                 EE..SEEE-TT-EE-TT-EE- CS
   Hexapep_2  15 gi..GvslGdncvvgaGvvit 33 
                     Gv++  ++++g+Gv+++
  KOO21146.1 261 SElfGVDIHPGATIGNGVMLD 281
                 43369*************997 PP

  == domain 2  score: 7.5 bits;  conditional E-value: 0.00058
                 EEE-TT-EE-TT-EE..SEEE- CS
   Hexapep_2   2 viIGdnCliGanagi..GvslG 21 
                 v IG+  ++G++ ++  Gv+lG
  KOO21146.1 286 VVIGATAIVGSDVYMlhGVTLG 307
                 89************889****9 PP

  == domain 3  score: 18.2 bits;  conditional E-value: 2.7e-07
                 EE-TT-EE-TT-EE.S.EEE-TT-EE-TT-EE-S CS
   Hexapep_2   3 iIGdnCliGanagi.G.vslGdncvvgaGvvita 34 
                 +IG  +++Ga a + G +++ d+c+v+aG ++t+
  KOO21146.1 321 TIGSSVILGAGAAVlGdITVADGCTVSAGAIVTK 354
                 69*********776666***************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (416 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       543  (0.0302861); expected 358.6 (0.02)
Passed bias filter:                      348  (0.0194099); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.49u 0.25s 00:00:00.74 Elapsed: 00:00:00.41
# Mc/sec: 3048.39
//
Query:       KOO21147.1  [L=319]
Description: nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    8.4e-77  258.6  10.1      1e-76  258.3  10.1    1.0  1  DBI_PRT   Phosphoribosyltransferase
  ------ inclusion threshold ------
      0.081   13.0   2.5       0.11   12.6   0.6    2.2  2  DUF5429   Family of unknown function (DUF5429)


Domain annotation for each model (and alignments):
>> DBI_PRT  Phosphoribosyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  258.3  10.1   1.2e-80     1e-76      17     262 ..       2     271 ..       1     281 [. 0.92

  Alignments for each domain:
  == domain 1  score: 258.3 bits;  conditional E-value: 1.2e-80
                 CTBSSSTTTTHHHHHHHHHHHCHHCGTTS---EEEEEEEEE-BGGG..GGT--SS-TTHHHHHHHHHHCT-SHHHHHHHHCTEEEEEEEEE-S.--T.. CS
     DBI_PRT  17 dsltkPlgsLGrLeelavqlagiqgtlkpelekkavlvfagDhGva..aegvsaypqevTaqmvenflaggaavnvlarqagaelrvvDvgva.dle.. 110
                 dsl+kP+gsLG Lee+++ l+ +q+tl+p  + + v+vf++DhGv   +  +s +pq vT +++++++ag +a+ vlar+aga+l+vvD+g++  ++  
  KOO21147.1   2 DSLAKPPGSLGLLEEWSLVLCRMQRTLSPVATPQSVIVFCADHGVKrcDPSISPFPQLVTCAVFRALAAGVSATGVLARAAGAALTVVDCGIDgVVDdv 100
                 89*******************************************944556****************************************98744455 PP

                 ........EE-.-SSSSB--TTTS-SS-HHHHHHHHHHHHHHHHHHHCT.TECEEEEEEE-TTCHHHHHHHHHHHHT--HHHH---TTT--HHHHHHHH CS
     DBI_PRT 111 ........vdr.kvrrgtaniakepAmtreeaeaaleaGieladelada.gadllalGemGigNttaaaallaallglepeevvGrGtglddeglarKi 199
                         v++ k+++gta++++ pAm++e +eaale+G+++++e++++ ga+++a+Ge+GigNtt+aaallaal+g  p e++GrGtgldd+gl++K 
  KOO21147.1 101 qpgsssirVRHaKLAKGTADMRTSPAMDEEGVEAALELGRACVREEVARrGARVIAIGEVGIGNTTSAAALLAALTGVAPCECCGRGTGLDDAGLRHKE 199
                 599999885566********************************998876************************************************* PP

                 HHHHHHHHCH........-TT..HHHHHHHHS-HHHHHHHHHHHHHHHTT--EEE-SHHHHHHHHHHHHHSG CS
     DBI_PRT 200 avieqalarh........aek.dplevLakvGGleiaalaGailgAaarripvvlDGfistaAalvAvrlap 262
                 av++  +a h        +++  + e+L+++GG+e+aa+aGa+++A +++++ v+DGfis++Aal+A++  +
  KOO21147.1 200 AVVSVCCANHqsalefapTPSaRAKEALRRLGGFELAAMAGAYIEAERAGVVAVVDGFISAVAALCAMATLQ 271
                 **********77665533233468*******************************************98755 PP

>> DUF5429  Family of unknown function (DUF5429)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.1      0.37   3.3e+03      52      65 ..      73      86 ..      68      91 .. 0.73
   2 ?   12.6   0.6   1.2e-05      0.11      17      63 ..     173     219 ..     168     224 .. 0.84

  Alignments for each domain:
  == domain 1  score: -1.8 bits;  conditional E-value: 0.37
     DUF5429 52 lGtrvlaraatkpv 65
                  t+vlaraa    
  KOO21147.1 73 SATGVLARAAGAAL 86
                56889999987655 PP

  == domain 2  score: 12.6 bits;  conditional E-value: 1.2e-05
     DUF5429  17 aavsGvavclsvrrGaGsvPaGnrgkktiiteyrilGtrvlaraatk 63 
                 aa++Gva c    rG+G   aG r k  +++        +l  a+t+
  KOO21147.1 173 AALTGVAPCECCGRGTGLDDAGLRHKEAVVSVCCANHQSALEFAPTP 219
                 89*************************99987766666666666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (319 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       656  (0.0365888); expected 358.6 (0.02)
Passed bias filter:                      379  (0.0211389); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.47u 0.26s 00:00:00.73 Elapsed: 00:00:00.44
# Mc/sec: 2202.17
//
Query:       KOO21148.1  [L=549]
Description: tubulin polyglutamylase ttll6-like protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.5e-25   88.1   0.0    7.7e-25   87.6   0.0    1.1  1  TTL       Tubulin-tyrosine ligase family


Domain annotation for each model (and alignments):
>> TTL  Tubulin-tyrosine ligase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   87.6   0.0   4.3e-29   7.7e-25      25     259 ..     158     389 ..     149     391 .. 0.88

  Alignments for each domain:
  == domain 1  score: 87.6 bits;  conditional E-value: 4.3e-29
                 ----------------...-------TTHHHHHHHTTTS--S-B----SS---XX------BSSTHHHHHHHH..SSS-EEEEB--SSB--BTTEEEEE CS
         TTL  25 llvknlkrtkkklekk.lkflprtfvlpadlaefveeaekeesntwIvKpsasarGkgirvfnkledikkivsqsqkeplvvqkYierPLLidgrKFDl 122
                 +l + l+    +++ +  +f+p  + +p + a+ +e++++++   w  K +    ++ + + ++l+++++     + ++++ q+Y+ rPLL +g K Dl
  KOO21148.1 158 FLGHALQLCAAQFGHEaCDFIPPIYAMPHQMARWREAFRTHRY--WMRKDKKVWGSASVSILSSLKQLPA-----EGTSYLLQQYVARPLLWQGFKHDL 249
                 5556666666666666789**********************99..************************5.....************************ PP

                 EEEEEE-..TT-XXXXXXXXXXXXXXXXXX....XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
         TTL 123 RlyvlvtsvnpLrvYvYkegllRfasvkYsp..svsdlddlevHLTNysiqkkskslneesnekkgkkwslqelekyleevrkeeiweeiesiiiktil 219
                 Rl++++tsv+pLr+Y+ ++g++R a++ Y+     ++++d+++HLT +   +       +s + ++ +    +    +++  ++e+w  ie++i kt+l
  KOO21148.1 250 RLWAVLTSVRPLRLYLLQDGWARIAARRYDAegLETNAEDVCMHLTATYCAEV----PTDSLRLMRTNLGTYRNGLATHSPFARELWPAIERAILKTVL 344
                 *******************************8889***********9988887....789999999999999999999999999*************** PP

                 XX......XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
         TTL 220 aae.....veasrlnvqrlkncfelyGvDilidenlkpwLlEvNa 259
                  a+     +ea+ ++   ++  f  +  D+++  +   ++ EvN+
  KOO21148.1 345 FAApllegYEAMLSTEGASYRRFGFLSLDLILTATGAAYVEEVNT 389
                 999997777777777777777777777799988888888888886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (549 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       302  (0.0168442); expected 358.6 (0.02)
Passed bias filter:                      239  (0.0133304); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.50u 0.24s 00:00:00.74 Elapsed: 00:00:00.41
# Mc/sec: 4049.49
//
Query:       KOO21149.1  [L=175]
Description: caltractin [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.6e-33  111.7  11.0    4.3e-09   35.3   0.0    4.2  4  EF-hand_1        EF hand
    9.3e-30  102.9   8.5    1.5e-16   60.6   0.4    2.2  2  EF-hand_7        EF-hand domain pair
    9.7e-26   87.5   9.6    2.5e-09   36.3   0.0    4.9  6  EF-hand_6        EF-hand domain
    1.1e-25   89.2  11.0    5.3e-12   45.4   0.3    4.0  4  EF-hand_8        EF-hand domain pair
    3.5e-20   70.5   8.5      2e-06   27.0   0.2    4.8  5  EF-hand_5        EF hand
    5.6e-14   52.2   0.2    7.6e-08   32.6   0.1    2.1  2  EF-hand_9        EF-hand domain
    2.5e-06   27.4   4.0       0.19   11.7   0.8    3.6  4  EF-hand_4        Cytoskeletal-regulatory complex EF hand
    0.00011   22.0   0.8        0.4   10.4   0.1    2.1  2  SurA_N_3         SurA N-terminal domain
    0.00041   20.3   1.0        3.5    7.5   0.0    3.7  4  Caleosin         Caleosin related protein
     0.0008   19.3   0.7       0.73    9.7   0.0    2.3  2  SurA_N_2         SurA N-terminal domain
      0.002   18.4   0.4        1.2    9.4   0.2    2.1  2  SPARC_Ca_bdg     Secreted protein acidic and rich in cysteine
     0.0037   17.6   0.7        1.5    9.2   0.1    2.3  2  EF-hand_14       EF-hand domain
  ------ inclusion threshold ------
      0.011   15.5   1.3      0.024   14.5   0.4    1.9  2  SUB1_ProdP9      SUB1 protease Prodomain ProdP9
      0.018   15.2   4.8      0.023   14.8   0.2    3.0  4  DUF3008          Protein of unknwon function (DUF3008)
      0.042   13.2   0.8       0.13   11.6   0.7    1.9  2  LETM1            LETM1-like protein
      0.067   13.2   1.7        3.1    7.9   0.1    2.8  3  YolD             YolD-like protein
      0.079   12.6   0.2        1.7    8.3   0.0    2.4  3  Peptidase_M24    Metallopeptidase family M24
        0.1   12.8   0.2         22    5.4   0.0    4.4  6  PMBR             Pseudomurein-binding repeat
       0.13   12.8   0.4        1.1    9.8   0.1    2.4  2  Acetyltransf_11  Udp N-acetylglucosamine O-acyltransferase; D
       0.16   12.1   1.5        0.6   10.3   0.5    2.3  3  DUF3911          Protein of unknown function (DUF3911)
        1.1    9.3   5.9        3.2    7.9   0.2    2.7  2  SapB_1           Saposin-like type B, region 1


Domain annotation for each model (and alignments):
>> EF-hand_1  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.3   0.0   5.1e-12   4.3e-09       1      29 []      25      53 ..      25      53 .. 0.96
   2 !   29.0   0.1   5.1e-10   4.3e-07       1      27 [.      61      87 ..      61      89 .. 0.95
   3 !   21.9   0.3   9.3e-08     8e-05       1      28 [.      98     125 ..      98     126 .. 0.91
   4 !   30.9   0.5   1.3e-10   1.1e-07       1      28 [.     134     161 ..     134     162 .. 0.96

  Alignments for each domain:
  == domain 1  score: 35.3 bits;  conditional E-value: 5.1e-12
                HHHHHHHHHTTTSSSEEEHHHHHHHHHHH CS
   EF-hand_1  1 elkeiFrefDkDgdGkIdfeEfkellkkl 29
                e++e+F++fD+D++G Id+ E+k+++++l
  KOO21149.1 25 EIREAFNLFDTDHSGSIDYRELKAAMRAL 53
                79************************985 PP

  == domain 2  score: 29.0 bits;  conditional E-value: 5.1e-10
                HHHHHHHHHTTTSSSEEEHHHHHHHHH CS
   EF-hand_1  1 elkeiFrefDkDgdGkIdfeEfkellk 27
                el++++ ++D Dg+G+I+f Ef+e+++
  KOO21149.1 61 ELRKMITDIDADGSGHIEFPEFLEMMT 87
                79************************8 PP

  == domain 3  score: 21.9 bits;  conditional E-value: 9.3e-08
                 HHHHHHHHHTTTSSSEEEHHHHHHHHHH CS
   EF-hand_1   1 elkeiFrefDkDgdGkIdfeEfkellkk 28 
                 e+ ++F++fD D +GkI+f+ +k++ k+
  KOO21149.1  98 EILKVFKLFDDDSTGKISFKNLKRVAKE 125
                 6889*******************99876 PP

  == domain 4  score: 30.9 bits;  conditional E-value: 1.3e-10
                 HHHHHHHHHTTTSSSEEEHHHHHHHHHH CS
   EF-hand_1   1 elkeiFrefDkDgdGkIdfeEfkellkk 28 
                 el+++++ +D+DgdG I+ +Ef +++kk
  KOO21149.1 134 ELQDMIDQADRDGDGEINPDEFYRIMKK 161
                 799***********************97 PP

>> EF-hand_7  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.6   0.4   1.8e-19   1.5e-16       2      70 ..      24      86 ..      23      87 .. 0.97
   2 !   46.1   2.5   5.7e-15   4.8e-12       2      71 .]      97     160 ..      96     160 .. 0.97

  Alignments for each domain:
  == domain 1  score: 60.6 bits;  conditional E-value: 1.8e-19
   EF-hand_7  2 eklkeaFkelDtdgdgyldkeellrllrkifqgagegsklsdeelellfkefDtdkdGvisfdEFlkly 70
                e+++eaF+++Dtd++g++d++el+ ++r        g+++ +eel++++ ++D d++G i f EFl+++
  KOO21149.1 24 EEIREAFNLFDTDHSGSIDYRELKAAMR------ALGFEVKKEELRKMITDIDADGSGHIEFPEFLEMM 86
                789*************************......9********************************99 PP

  == domain 2  score: 46.1 bits;  conditional E-value: 5.7e-15
   EF-hand_7   2 eklkeaFkelDtdgdgyldkeellrllrkifqgagegsklsdeelellfkefDtdkdGvisfdEFlklyr 71 
                 e++  +Fk++D d +g+++   l+r+ +      + g+++++eel+++++  D d+dG+i+ dEF+++++
  KOO21149.1  97 EEILKVFKLFDDDSTGKISFKNLKRVAK------ELGENMTEEELQDMIDQADRDGDGEINPDEFYRIMK 160
                 78999***********************......*********************************996 PP

>> EF-hand_6  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.3   0.0   2.9e-12   2.5e-09       1      31 []      25      54 ..      25      54 .. 0.96
   2 ?   -0.6   0.0         2   1.7e+03      19      27 ..      59      67 ..      56      68 .. 0.82
   3 !   12.8   0.0    0.0001     0.089       2      27 ..      62      87 ..      61      91 .. 0.85
   4 !   20.9   0.2   2.6e-07   0.00022       1      31 []      98     127 ..      98     127 .. 0.90
   5 ?   -0.4   0.0       1.7   1.4e+03      18      27 ..     131     140 ..     130     141 .. 0.83
   6 !   20.4   0.3   3.7e-07   0.00032       2      28 ..     135     161 ..     134     172 .. 0.86

  Alignments for each domain:
  == domain 1  score: 36.3 bits;  conditional E-value: 2.9e-12
   EF-hand_6  1 elreaFklfDkdgdGkidaeElrkalrkalg 31
                e+reaF+lfD+d++G+id+ El++a+r alg
  KOO21149.1 25 EIREAFNLFDTDHSGSIDYRELKAAMR-ALG 54
                79*************************.887 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 2
   EF-hand_6 19 aeElrkalr 27
                +eElrk+++
  KOO21149.1 59 KEELRKMIT 67
                79****997 PP

  == domain 3  score: 12.8 bits;  conditional E-value: 0.0001
   EF-hand_6  2 lreaFklfDkdgdGkidaeElrkalr 27
                lr+    +D dg+G+i + E+  +++
  KOO21149.1 62 LRKMITDIDADGSGHIEFPEFLEMMT 87
                66666779***************998 PP

  == domain 4  score: 20.9 bits;  conditional E-value: 2.6e-07
   EF-hand_6   1 elreaFklfDkdgdGkidaeElrkalrkalg 31 
                 e+ ++FklfD d +Gki+++ l+++ + +lg
  KOO21149.1  98 EILKVFKLFDDDSTGKISFKNLKRVAK-ELG 127
                 5789*******************9988.665 PP

  == domain 5  score: -0.4 bits;  conditional E-value: 1.7
   EF-hand_6  18 daeElrkalr 27 
                 + eEl++++ 
  KOO21149.1 131 TEEELQDMID 140
                 899***9985 PP

  == domain 6  score: 20.4 bits;  conditional E-value: 3.7e-07
   EF-hand_6   2 lreaFklfDkdgdGkidaeElrkalrk 28 
                 l++  ++ D+dgdG+i+++E+ ++++k
  KOO21149.1 135 LQDMIDQADRDGDGEINPDEFYRIMKK 161
                 67777899*****************95 PP

>> EF-hand_8  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.7   0.1   3.1e-07   0.00026      26      52 ..      24      50 ..       8      50 .. 0.79
   2 !   32.5   0.2   6.4e-11   5.5e-08       7      53 ..      43      87 ..      41      89 .. 0.94
   3 !    9.1   0.2    0.0014       1.2      24      46 ..      95     117 ..      87     118 .. 0.86
   4 !   45.4   0.3   6.2e-15   5.3e-12       2      55 .]     111     162 ..     110     162 .. 0.95

  Alignments for each domain:
  == domain 1  score: 20.7 bits;  conditional E-value: 3.1e-07
   EF-hand_8 26 eevdilfrefDtdgdGkisfeEFcvll 52
                ee+++ f++fDtd++G i++ E  + +
  KOO21149.1 24 EEIREAFNLFDTDHSGSIDYRELKAAM 50
                578889***************998765 PP

  == domain 2  score: 32.5 bits;  conditional E-value: 6.4e-11
   EF-hand_8  7 reelrrilrilglkkglseeevdilfrefDtdgdGkisfeEFcvlle 53
                  el+ ++r+lg +  + +ee++ ++  +D dg+G+i f EF+++++
  KOO21149.1 43 YRELKAAMRALGFE--VKKEELRKMITDIDADGSGHIEFPEFLEMMT 87
                569***********..*****************************95 PP

  == domain 3  score: 9.1 bits;  conditional E-value: 0.0014
   EF-hand_8  24 seeevdilfrefDtdgdGkisfe 46 
                 ++ee+  +f++fD d  Gkisf+
  KOO21149.1  95 TKEEILKVFKLFDDDSTGKISFK 117
                 78888899*************96 PP

  == domain 4  score: 45.4 bits;  conditional E-value: 6.2e-15
   EF-hand_8   2 kgkItreelrrilrilglkkglseeevdilfrefDtdgdGkisfeEFcvllerr 55 
                 +gkI++ +l+r ++ lg +  ++eee++++++ +D+dgdG i+ +EF+  +++r
  KOO21149.1 111 TGKISFKNLKRVAKELGEN--MTEEELQDMIDQADRDGDGEINPDEFYRIMKKR 162
                 8**********99999*99..***************************999885 PP

>> EF-hand_5  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.9   0.0   9.8e-08   8.4e-05       1      23 [.      26      48 ..      26      50 .. 0.90
   2 ?   -1.0   0.0       1.6   1.4e+03      18      24 ..      59      65 ..      59      66 .. 0.84
   3 !   16.3   0.0   5.8e-06     0.005       6      25 .]      67      86 ..      62      86 .. 0.84
   4 !    7.4   0.2    0.0037       3.2       3      23 ..     101     121 ..      99     123 .. 0.84
   5 !   27.0   0.2   2.4e-09     2e-06       1      25 []     135     159 ..     135     159 .. 0.94

  Alignments for each domain:
  == domain 1  score: 21.9 bits;  conditional E-value: 9.8e-08
                HHHHHHHH-SS-SSCE-HHHHHH CS
   EF-hand_5  1 lkdtFqaiDlNgDGkIskeELkt 23
                ++++F+ +D++++G I+  ELk+
  KOO21149.1 26 IREAFNLFDTDHSGSIDYRELKA 48
                5778*****************97 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 1.6
                HHHHHHH CS
   EF-hand_5 18 keELktl 24
                keEL+++
  KOO21149.1 59 KEELRKM 65
                79**997 PP

  == domain 3  score: 16.3 bits;  conditional E-value: 5.8e-06
                HHH-SS-SSCE-HHHHHHHH CS
   EF-hand_5  6 qaiDlNgDGkIskeELktlv 25
                  iD++g+G+I + E+ +++
  KOO21149.1 67 TDIDADGSGHIEFPEFLEMM 86
                579*************9986 PP

  == domain 4  score: 7.4 bits;  conditional E-value: 0.0037
                 HHHHHH-SS-SSCE-HHHHHH CS
   EF-hand_5   3 dtFqaiDlNgDGkIskeELkt 23 
                 ++F+ +D +  GkIs+  Lk+
  KOO21149.1 101 KVFKLFDDDSTGKISFKNLKR 121
                 68*************976665 PP

  == domain 5  score: 27.0 bits;  conditional E-value: 2.4e-09
                 HHHHHHHH-SS-SSCE-HHHHHHHH CS
   EF-hand_5   1 lkdtFqaiDlNgDGkIskeELktlv 25 
                 l+d+ +++D +gDG I+++E+++++
  KOO21149.1 135 LQDMIDQADRDGDGEINPDEFYRIM 159
                 7999******************976 PP

>> EF-hand_9  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.8   0.0   3.7e-06    0.0032       3      63 ..      29      87 ..      27      90 .. 0.93
   2 !   32.6   0.1   8.9e-11   7.6e-08       3      64 ..     102     161 ..     101     162 .. 0.93

  Alignments for each domain:
  == domain 1  score: 17.8 bits;  conditional E-value: 3.7e-06
   EF-hand_9  3 vFevcDtqktGrVpvsrlidyLravtaqdpeeseLeelakelDPdgedasvdldtflrvmr 63
                 F+++Dt+  G +   +l++ +ra +  + +  eL +    +D dg  + +++  fl++m 
  KOO21149.1 29 AFNLFDTDHSGSIDYRELKAAMRALGF-EVKKEELRKMITDIDADGS-GHIEFPEFLEMMT 87
                5**************************.788889*************.**********996 PP

  == domain 2  score: 32.6 bits;  conditional E-value: 8.9e-11
   EF-hand_9   3 vFevcDtqktGrVpvsrlidyLravtaqdpeeseLeelakelDPdgedasvdldtflrvmre 64 
                 vF+++D ++tG++  ++l+ + +  ++++ +e eL++   ++D dg  ++++ d f r+m++
  KOO21149.1 102 VFKLFDDDSTGKISFKNLKRVAKELGENM-TEEELQDMIDQADRDGD-GEINPDEFYRIMKK 161
                 7**************************66.5669************9.************97 PP

>> EF-hand_4  Cytoskeletal-regulatory complex EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.0   0.0   0.00077      0.66      40      72 ..      18      53 ..      10      64 .. 0.76
   2 ?    5.1   0.0     0.024        21      41      69 ..      58      86 ..      53      90 .. 0.76
   3 ?    2.2   0.1      0.21   1.8e+02      42      64 ..      96     118 ..      75     126 .. 0.86
   4 !   11.7   0.8   0.00022      0.19       8      70 ..      98     160 ..      91     165 .. 0.73

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.00077
   EF-hand_4 40 leedkleki...wdladidedgkldfeefciamrli 72
                l+e+++e+i   ++l d d+ g++d+ e+  amr +
  KOO21149.1 18 LSEEQIEEIreaFNLFDTDHSGSIDYRELKAAMRAL 53
                66666666533378*******************954 PP

  == domain 2  score: 5.1 bits;  conditional E-value: 0.024
   EF-hand_4 41 eedklekiwdladidedgkldfeefciam 69
                ++++l k+ +  d d  g+++f ef  +m
  KOO21149.1 58 KKEELRKMITDIDADGSGHIEFPEFLEMM 86
                6677778766666677789******8776 PP

  == domain 3  score: 2.2 bits;  conditional E-value: 0.21
   EF-hand_4  42 edklekiwdladidedgkldfee 64 
                 ++++ k+++l d d+ gk+ f++
  KOO21149.1  96 KEEILKVFKLFDDDSTGKISFKN 118
                 56788999**********99986 PP

  == domain 4  score: 11.7 bits;  conditional E-value: 0.00022
   EF-hand_4   8 eikkyweifsglkpednkltgdkvapvlkn..skleedklekiwdladidedgkldfeefciamr 70 
                 ei k +++f   +    k++ +++  v k+   +++e++l+ + d ad d dg+++ +ef  +m+
  KOO21149.1  98 EILKVFKLFDDDS--TGKISFKNLKRVAKElgENMTEEELQDMIDQADRDGDGEINPDEFYRIMK 160
                 5666666665444..3455555555555542268999***********************99987 PP

>> SurA_N_3  SurA N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.2   0.0   0.00055      0.47      89     121 ..      38      70 ..      12      76 .. 0.83
   2 !   10.4   0.1   0.00047       0.4      67     144 ..      88     165 ..      78     168 .. 0.78

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.00055
    SurA_N_3  89 dqlidealllqeakklglsvsdeevakeiasip 121
                 +  id + l+++++ lg++v++ee++k+i++i+
  KOO21149.1  38 SGSIDYRELKAAMRALGFEVKKEELRKMITDID 70 
                 66799999*********************9997 PP

  == domain 2  score: 10.4 bits;  conditional E-value: 0.00047
    SurA_N_3  67 qqlgg.nldaelldelglrqqvldqlidealllqeakklglsvsdeevakeiasipaFq.edGkFdkerYkqlLaanglt 144
                  ++g+ + ++e l+  +l ++     i+ + l+  ak+lg ++++ee++++i + +  +  dG+ +++++ ++++++g +
  KOO21149.1  88 GKMGEkDTKEEILKVFKLFDDDSTGKISFKNLKRVAKELGENMTEEELQDMIDQAD--RdGDGEINPDEFYRIMKKRGDN 165
                 4555523444444447777777888899999*********************9988..6469**********99998865 PP

>> Caleosin  Caleosin related protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.5   0.0    0.0041       3.5      10      37 ..      30      57 ..      22      66 .. 0.89
   2 ?    2.6   0.0      0.13   1.1e+02      93     132 ..      60      99 ..      56     106 .. 0.82
   3 ?    1.7   0.0      0.26   2.2e+02      10      37 ..     103     130 ..      95     139 .. 0.68
   4 ?    5.9   0.1     0.013        11       5      32 ..     134     161 ..     130     168 .. 0.82

  Alignments for each domain:
  == domain 1  score: 7.5 bits;  conditional E-value: 0.0041
    Caleosin 10 vaFfDrdkdGiiypldtyrgfralgfnv 37
                ++ fD+d+ G i   +   ++ralgf+v
  KOO21149.1 30 FNLFDTDHSGSIDYRELKAAMRALGFEV 57
                578***********************97 PP

  == domain 2  score: 2.6 bits;  conditional E-value: 0.13
    Caleosin  93 qkfeeifskyakekkdaltlkevlellkgqrealDlfgwl 132
                 +++ ++ +  +++ ++++++ e+le+++g++  +D+   +
  KOO21149.1  60 EELRKMITDIDADGSGHIEFPEFLEMMTGKMGEKDTKEEI 99 
                 667788889999999**************99999987655 PP

  == domain 3  score: 1.7 bits;  conditional E-value: 0.26
    Caleosin  10 vaFfDrdkdGiiypldtyrgfralgfnv 37 
                 ++ fD d+ G i + +  r  ++lg n+
  KOO21149.1 103 FKLFDDDSTGKISFKNLKRVAKELGENM 130
                 4557777777777777666666666655 PP

  == domain 4  score: 5.9 bits;  conditional E-value: 0.013
    Caleosin   5 vLqqHvaFfDrdkdGiiypldtyrgfra 32 
                  Lq  ++  Drd dG i p + yr +++
  KOO21149.1 134 ELQDMIDQADRDGDGEINPDEFYRIMKK 161
                 688888888*************997766 PP

>> SurA_N_2  SurA N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.7   0.0   0.00085      0.73      94     122 ..      41      69 ..      22      99 .. 0.83
   2 !    8.5   0.3    0.0019       1.7      95     124 ..     115     144 ..      78     159 .. 0.82

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 0.00085
    SurA_N_2  94 vseklleqeaeklGltvsdeelqdaiqgn 122
                 ++ + l+ +++ lG++v +eel+++i+ +
  KOO21149.1  41 IDYRELKAAMRALGFEVKKEELRKMITDI 69 
                 66677999******************983 PP

  == domain 2  score: 8.5 bits;  conditional E-value: 0.0019
    SurA_N_2  95 seklleqeaeklGltvsdeelqdaiqgnpa 124
                 s k l+  a++lG ++++eelqd+i +   
  KOO21149.1 115 SFKNLKRVAKELGENMTEEELQDMIDQADR 144
                 55668899*****************99655 PP

>> SPARC_Ca_bdg  Secreted protein acidic and rich in cysteine Ca binding region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.5   0.0    0.0059         5      48     111 ..      18      83 ..       5      85 .. 0.76
   2 !    9.4   0.2    0.0014       1.2      50     111 ..      93     156 ..      83     158 .. 0.86

  Alignments for each domain:
  == domain 1  score: 7.5 bits;  conditional E-value: 0.0059
  SPARC_Ca_bdg  48 nlkeckepvawkFsklDtnsdkvlsksELaplrapl...vklehCikpflescDadkdkkislkEwc 111
                    ++e  e+++  F+ +Dt++ ++++ +EL++    l   vk  +  +++++  Dad  ++i+  E+ 
    KOO21149.1  18 LSEEQIEEIREAFNLFDTDHSGSIDYRELKAAMRALgfeVK-KEELRKMITDIDADGSGHIEFPEFL 83 
                   456777889999*****************876555533223.3447788999999999999999886 PP

  == domain 2  score: 9.4 bits;  conditional E-value: 0.0014
  SPARC_Ca_bdg  50 keckepvawkFsklDtnsdkvlsksELaplrapl..vklehCikpflescDadkdkkislkEwc 111
                   k +ke++   F+ +D +s + +s + L+ + ++l    +e+  + +++++D d d++i+  E+ 
    KOO21149.1  93 KDTKEEILKVFKLFDDDSTGKISFKNLKRVAKELgeNMTEEELQDMIDQADRDGDGEINPDEFY 156
                   5567888889999*******************99333469999******************996 PP

>> EF-hand_14  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.8   0.0      0.01       8.6       6      46 ..      30      70 ..      27      89 .. 0.90
   2 !    9.2   0.1    0.0018       1.5       5      45 ..     102     142 ..      98     162 .. 0.89

  Alignments for each domain:
  == domain 1  score: 6.8 bits;  conditional E-value: 0.01
  EF-hand_14  6 fdlfkdeetdklsvakllkaLaetGirkdDpRLkellkklk 46
                f+lf++++++++   +l +a+++ G + +   L+++++ + 
  KOO21149.1 30 FNLFDTDHSGSIDYRELKAAMRALGFEVKKEELRKMITDID 70
                9*************************999999999998775 PP

  == domain 2  score: 9.2 bits;  conditional E-value: 0.0018
  EF-hand_14   5 lfdlfkdeetdklsvakllkaLaetGirkdDpRLkellkkl 45 
                 +f+lf+d++t+k+s+++l ++ +e G + +   L++++++ 
  KOO21149.1 102 VFKLFDDDSTGKISFKNLKRVAKELGENMTEEELQDMIDQA 142
                 8*************************999999999998875 PP

>> SUB1_ProdP9  SUB1 protease Prodomain ProdP9
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.0         2   1.7e+03      40      64 ..      61      86 ..      50     102 .. 0.69
   2 ?   14.5   0.4   2.8e-05     0.024      30      68 ..     109     146 ..      96     155 .. 0.86

  Alignments for each domain:
  == domain 1  score: -1.1 bits;  conditional E-value: 2
  SUB1_ProdP9 40 nlksiiielkedttde.elieyikil 64
                 +l+ +i +++ d + + e+ e+++++
   KOO21149.1 61 ELRKMITDIDADGSGHiEFPEFLEMM 86
                 56778888777754332555555555 PP

  == domain 2  score: 14.5 bits;  conditional E-value: 2.8e-05
  SUB1_ProdP9  30 eskGklanlknlksiiielkedttdeelieyikileekG 68 
                  +s Gk++ +knlk +  el e++t+eel + i+  ++ G
   KOO21149.1 109 DSTGKIS-FKNLKRVAKELGENMTEEELQDMIDQADRDG 146
                  5788886.8**********************99888877 PP

>> DUF3008  Protein of unknwon function (DUF3008)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.0       8.2     7e+03      20      24 ..      12      16 ..       4      27 .. 0.52
   2 ?    0.8   0.0      0.64   5.5e+02      19      45 ..      39      65 ..      37      70 .. 0.84
   3 ?   14.8   0.2   2.7e-05     0.023      19      46 ..     112     139 ..     110     147 .. 0.86
   4 ?   -3.0   0.0        10   8.5e+03      17      26 ..     161     170 ..     160     171 .. 0.85

  Alignments for each domain:
  == domain 1  score: -2.7 bits;  conditional E-value: 8.2
     DUF3008 20 etkks 24
                + kk 
  KOO21149.1 12 KAKKP 16
                44333 PP

  == domain 2  score: 0.8 bits;  conditional E-value: 0.64
     DUF3008 19 GetkkseLkgaSksMyesMsekeLeel 45
                G  + +eLk a + +     ++eL+++
  KOO21149.1 39 GSIDYRELKAAMRALGFEVKKEELRKM 65
                666778999999999999999999998 PP

  == domain 3  score: 14.8 bits;  conditional E-value: 2.7e-05
     DUF3008  19 GetkkseLkgaSksMyesMsekeLeelA 46 
                 G+ + ++Lk  +k++ e M+e+eL+++ 
  KOO21149.1 112 GKISFKNLKRVAKELGENMTEEELQDMI 139
                 777889********************96 PP

  == domain 4  score: -3.0 bits;  conditional E-value: 10
     DUF3008  17 KrGetkkseL 26 
                 KrG+++ ++L
  KOO21149.1 161 KRGDNPLDDL 170
                 99*9998887 PP

>> LETM1  LETM1-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.0      0.86   7.4e+02     211     246 ..      32      64 ..      15      68 .. 0.62
   2 ?   11.6   0.7   0.00015      0.13     128     173 ..      73     121 ..      42     140 .. 0.70

  Alignments for each domain:
  == domain 1  score: -0.7 bits;  conditional E-value: 0.86
       LETM1 211 aikreGvdsLseeeLqeacrsRGlraaglseeelre 246
                 + + +   s++ +eL+ a r+ G+   ++++eelr+
  KOO21149.1  32 LFDTDHSGSIDYRELKAAMRALGF---EVKKEELRK 64 
                 445555567777777777666666...466666665 PP

  == domain 2  score: 11.6 bits;  conditional E-value: 0.00015
       LETM1 128 kekaeelkeflkkvrsggepeevsneeilkvaklFkde....ltLdnlsr 173
                  + + e+ efl+ +  +   e+ ++eeilkv klF+d+    ++++nl+r
  KOO21149.1  73 GSGHIEFPEFLEMMTGKM-GEKDTKEEILKVFKLFDDDstgkISFKNLKR 121
                 346778889998876554.5688**************9544445555554 PP

>> YolD  YolD-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.9   0.1    0.0036       3.1      16      35 ..      10      29 ..       6      67 .. 0.90
   2 ?    3.9   0.0     0.063        54      56      93 ..      83     122 ..      80     123 .. 0.89
   3 ?   -2.0   0.2       4.5   3.9e+03       7      34 ..     133     160 ..     131     161 .. 0.74

  Alignments for each domain:
  == domain 1  score: 7.9 bits;  conditional E-value: 0.0036
        YolD 16 qkkvekpeLDeqqleeinek 35
                + k +kp L+e+q+eei e+
  KOO21149.1 10 KGKAKKPGLSEEQIEEIREA 29
                77999************886 PP

  == domain 2  score: 3.9 bits;  conditional E-value: 0.063
        YolD  56 leevtgyiekidelnkelkledeedeek..kiklsnIvev 93 
                 le +tg++ + d+ ++ lk+ + +d+++  ki+++n+ +v
  KOO21149.1  83 LEMMTGKMGEKDTKEEILKVFKLFDDDStgKISFKNLKRV 122
                 67799999999**********999999999******9887 PP

  == domain 3  score: -2.0 bits;  conditional E-value: 4.5
        YolD   7 ealrelkeeqkkvekpeLDeqqleeine 34 
                 e+l++++ + ++    e+ ++++ +i +
  KOO21149.1 133 EELQDMIDQADRDGDGEINPDEFYRIMK 160
                 5677888888888888888888877765 PP

>> Peptidase_M24  Metallopeptidase family M24
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.0       1.6   1.4e+03      22      38 ..      15      31 ..       9      45 .. 0.79
   2 ?    1.5   0.0      0.24     2e+02       6      51 ..      38      81 ..      34      87 .. 0.84
   3 ?    8.3   0.0     0.002       1.7       8      44 ..     113     147 ..     110     160 .. 0.81

  Alignments for each domain:
  == domain 1  score: -1.2 bits;  conditional E-value: 1.6
                   HTTCBHHHHHHHHHHHH CS
  Peptidase_M24 22 kpgvterelaaeieatt 38
                   kpg +e++++++ ea+ 
     KOO21149.1 15 KPGLSEEQIEEIREAFN 31
                   79999999999988764 PP

  == domain 2  score: 1.5 bits;  conditional E-value: 0.24
                   HHHHHHHHHHHHHHHHHTTCBHHHHHHHHHHHHHHHTTTCEESSSS CS
  Peptidase_M24  6 aariasaaleavleaikpgvterelaaeieattlkrhgarglafpp 51
                   ++ i+++ l+a+++a+   v+ +el ++i++    + g++ + fp 
     KOO21149.1 38 SGSIDYRELKAAMRALGFEVKKEELRKMITDI--DADGSGHIEFPE 81
                   5778889999999999999**********988..888888877775 PP

  == domain 3  score: 8.3 bits;  conditional E-value: 0.002
                    HHHHHHHHHHHHHHHTTCBHHHHHHHHHHHHHHHTTT CS
  Peptidase_M24   8 riasaaleavleaikpgvterelaaeieattlkrhga 44 
                    +i+ + l++v++++ + +te+el+++i+++   r g 
     KOO21149.1 113 KISFKNLKRVAKELGENMTEEELQDMIDQA--DRDGD 147
                    6777789999999***************98..66554 PP

>> PMBR  Pseudomurein-binding repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.5   0.0       1.9   1.6e+03       2      13 ..      38      49 ..      38      51 .. 0.86
   2 ?   -1.7   0.0       4.6   3.9e+03       7      16 ..      59      68 ..      57      69 .. 0.81
   3 ?   -1.3   0.0       3.4   2.9e+03       1      13 [.      73      85 ..      73      86 .. 0.90
   4 ?   -0.9   0.0       2.5   2.2e+03       6      15 ..      95     104 ..      95     105 .. 0.89
   5 ?    5.4   0.0     0.026        22       1      22 [.     110     131 ..     110     133 .. 0.87
   6 ?   -1.2   0.0       3.1   2.7e+03       2      13 ..     147     158 ..     146     161 .. 0.76

  Alignments for each domain:
  == domain 1  score: -0.5 bits;  conditional E-value: 1.9
        PMBR  2 sgkisyeeyldm 13
                sg+i y+e++++
  KOO21149.1 38 SGSIDYRELKAA 49
                799*****9875 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 4.6
        PMBR  7 yeeyldmasr 16
                +ee+++m+ +
  KOO21149.1 59 KEELRKMITD 68
                799***9876 PP

  == domain 3  score: -1.3 bits;  conditional E-value: 3.4
        PMBR  1 gsgkisyeeyldm 13
                gsg i + e+l+m
  KOO21149.1 73 GSGHIEFPEFLEM 85
                6899*******98 PP

  == domain 4  score: -0.9 bits;  conditional E-value: 2.5
        PMBR   6 syeeyldmas 15 
                 ++ee+l++++
  KOO21149.1  95 TKEEILKVFK 104
                 79*****997 PP

  == domain 5  score: 5.4 bits;  conditional E-value: 0.026
        PMBR   1 gsgkisyeeyldmasrvlafie 22 
                 ++gkis+ +++++a++   +++
  KOO21149.1 110 STGKISFKNLKRVAKELGENMT 131
                 68*************9888776 PP

  == domain 6  score: -1.2 bits;  conditional E-value: 3.1
        PMBR   2 sgkisyeeyldm 13 
                 +g i ++e+ ++
  KOO21149.1 147 DGEINPDEFYRI 158
                 688999999877 PP

>> Acetyltransf_11  Udp N-acetylglucosamine O-acyltransferase; Domain 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   0.1    0.0013       1.1      24      72 ..      14      67 ..      12     104 .. 0.70
   2 ?    0.8   0.0      0.78   6.7e+02      52      75 ..     117     140 ..      83     148 .. 0.50

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.0013
                     HHTT--HHHHHHHHHHHHHHHS......SSS-HHHHHHHH..HHHTTTSCCHHHHHH CS
  Acetyltransf_11 24 kRrgfseeeikalkkayrllyr......sglsleealeel..eeeaeespevqelld 72
                     k+ g+see+i+++++a++l+        +  +l+ a+++l  e    +++e++++++
       KOO21149.1 14 KKPGLSEEQIEEIREAFNLFDTdhsgsiDYRELKAAMRALgfE---VKKEELRKMIT 67
                     56799************98866543222222233333333331...22445666655 PP

  == domain 2  score: 0.8 bits;  conditional E-value: 0.78
                      HHHHHHHHHTTTSCCHHHHHHHHH CS
  Acetyltransf_11  52 ealeeleeeaeespevqelldFie 75 
                      + l+++++e+ e+   +el d i+
       KOO21149.1 117 KNLKRVAKELGENMTEEELQDMID 140
                      233444333333333444444444 PP

>> DUF3911  Protein of unknown function (DUF3911)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.0       3.7   3.2e+03      11      22 ..      24      35 ..      19      48 .. 0.61
   2 ?   -0.8   0.0         2   1.7e+03      10      37 ..      59      85 ..      50      94 .. 0.72
   3 ?   10.3   0.5    0.0007       0.6       7      46 ..      93     134 ..      87     148 .. 0.75

  Alignments for each domain:
  == domain 1  score: -1.7 bits;  conditional E-value: 3.7
     DUF3911 11 kevvemlqlfdl 22
                +e+ e + lfd 
  KOO21149.1 24 EEIREAFNLFDT 35
                455555556653 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 2
     DUF3911 10 rkevvemlqlfdlmdtkGfckfknyvev 37
                ++e+ +m+   d  d  G   f +++e+
  KOO21149.1 59 KEELRKMITDIDA-DGSGHIEFPEFLEM 85
                6677777777764.77888888888886 PP

  == domain 3  score: 10.3 bits;  conditional E-value: 0.0007
     DUF3911   7 kGtrkevvemlqlfdlmdtkGfckfknyveve...anetkhne 46 
                 k t++e++++++lfd  d  G   fkn   v     ++ +++e
  KOO21149.1  93 KDTKEEILKVFKLFDD-DSTGKISFKNLKRVAkelGENMTEEE 134
                 789************7.8889999*998777522444555555 PP

>> SapB_1  Saposin-like type B, region 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.3   0.0     0.051        43      17      30 ..      90     103 ..      82     104 .. 0.82
   2 ?    7.9   0.2    0.0037       3.2      13      32 ..     122     141 ..     119     142 .. 0.87

  Alignments for each domain:
  == domain 1  score: 4.3 bits;  conditional E-value: 0.051
                 H-SS--HHHHHHHH CS
      SapB_1  17 LkdNkTeeeIieaL 30 
                 +++++T+eeI++++
  KOO21149.1  90 MGEKDTKEEILKVF 103
                 6789******9975 PP

  == domain 2  score: 7.9 bits;  conditional E-value: 0.0037
                 HHHHH-SS--HHHHHHHHHH CS
      SapB_1  13 veklLkdNkTeeeIieaLek 32 
                 v k+L++N Teee+ +++++
  KOO21149.1 122 VAKELGENMTEEELQDMIDQ 141
                 6789**********999997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (175 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       931  (0.051927); expected 358.6 (0.02)
Passed bias filter:                      675  (0.0376485); expected 358.6 (0.02)
Passed Vit filter:                        80  (0.00446204); expected 17.9 (0.001)
Passed Fwd filter:                        21  (0.00117129); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              21  [number of targets reported over threshold]
# CPU time: 0.51u 0.30s 00:00:00.81 Elapsed: 00:00:00.44
# Mc/sec: 1194.52
//
Query:       KOO21150.1  [L=1217]
Description: epithelial splicing regulatory protein 2 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    4.4e-21   74.5   0.0    3.8e-07   29.8   0.0    4.5  4  RRM_1         RNA recognition motif. (a.k.a. RRM, RBD, or RNP


Domain annotation for each model (and alignments):
>> RRM_1  RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.6   0.0     0.014   2.4e+02      37      69 ..     728     759 ..     696     760 .. 0.88
   2 !   23.0   0.0   2.8e-09   5.1e-05       2      67 ..     791     857 ..     790     859 .. 0.93
   3 !   14.1   0.0   1.7e-06      0.03       4      69 ..     903     968 ..     900     969 .. 0.86
   4 !   29.8   0.0   2.1e-11   3.8e-07       3      61 ..    1008    1065 ..    1006    1073 .. 0.91

  Alignments for each domain:
  == domain 1  score: 1.6 bits;  conditional E-value: 0.014
                 SEEEEEEEEESSHHHHHHHHHHHTTEEETTEEE CS
       RRM_1  37 kskgfafVeFeskedAekAlealngkklggrel 69 
                 ++ g afV+  +  +  + l+  n++++g r +
  KOO21150.1 728 NAAGEAFVTLSTAAQLGEVLQ-ANHQEIGRRYV 759
                 6889*****************.9****999875 PP

  == domain 2  score: 23.0 bits;  conditional E-value: 2.8e-09
                 EEESETTTSSHHHHHHHHHTTSCE..EEEEEEEETTTSEEEEEEEEESSHHHHHHHHHHHTTEEETTE CS
       RRM_1   2 fVgnLppdvteeeLkelFskfGpi..ksiklvrdetgkskgfafVeFeskedAekAlealngkklggr 67 
                  +++Lp++++ e++  +F+       +++ l+r+++g+s g a+  F+++e+A +Al+ ++++klg+r
  KOO21150.1 791 RMRGLPFSTSPEDILVFFGSPPTLqlSNVHLMRKADGRSSGDAYAVFDTEEAAVEALQ-YDKQKLGSR 857
                 689*****************8877669*******************************.*****9987 PP

  == domain 3  score: 14.1 bits;  conditional E-value: 1.7e-06
                 ESETTTSSHHHHHHHHHTTSCE.EEEEEEEETTTSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEE CS
       RRM_1   4 gnLppdvteeeLkelFskfGpi.ksiklvrdetgkskgfafVeFeskedAekAlealngkklggrel 69 
                 ++Lp++vt e++  +++++      + l++  +g++ g a+Ve  s+ed ++Al   +++ +ggr +
  KOO21150.1 903 RGLPWSVTLENIAIFLNGITIPkGGVHLMNGVNGRPSGLAYVELSSEEDQKEALC-RDKQSIGGRYI 968
                 7899999999999999996666256788888***********************9.99999999976 PP

  == domain 4  score: 29.8 bits;  conditional E-value: 2.1e-11
                  EESETTTSSHHHHHHHHHTTSCEEEEEEEEETTTSEEEEEEEEESSHHHHHHHHHHHTT CS
       RRM_1    3 VgnLppdvteeeLkelFskfGpiksiklvrdetgkskgfafVeFeskedAekAlealng 61  
                  +++Lp+ ++e++++++F++   +  +++  +  +++ gf++V+F ++ed ++Al + n 
  KOO21150.1 1008 LRGLPYQINEQQISAFFQPLFVV-AVQIAFNPSRQPSGFGYVQFRTPEDTTQALHRTNQ 1065
                  589****************8666.9*****************************98886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1217 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1540  (0.0858944); expected 358.6 (0.02)
Passed bias filter:                      472  (0.0263261); expected 358.6 (0.02)
Passed Vit filter:                        65  (0.00362541); expected 17.9 (0.001)
Passed Fwd filter:                        18  (0.00100396); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 1.17u 0.34s 00:00:01.51 Elapsed: 00:00:00.52
# Mc/sec: 7017.47
//
Query:       KOO21151.1  [L=367]
Description: ribosome maturation protein sbds-like protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.8e-25   88.8   0.8    2.8e-25   88.2   0.4    1.5  2  SBDS      Shwachman-Bodian-Diamond syndrome (SBDS) protein
    5.6e-24   84.4   0.0    8.8e-24   83.8   0.0    1.3  1  SBDS_C    SBDS protein C-terminal domain
    4.5e-05   24.0   0.0    8.8e-05   23.1   0.0    1.5  1  Sel1      Sel1 repeat
  ------ inclusion threshold ------
       0.15   12.3   0.4        9.2    6.5   0.1    2.4  2  DUF4170   Domain of unknown function (DUF4170)


Domain annotation for each model (and alignments):
>> SBDS  Shwachman-Bodian-Diamond syndrome (SBDS) protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   88.2   0.4   6.2e-29   2.8e-25       1      88 []      14     101 ..      14     101 .. 0.98
   2 ?   -3.3   0.0       2.2     1e+04      46      62 ..     310     326 ..     309     341 .. 0.77

  Alignments for each domain:
  == domain 1  score: 88.2 bits;  conditional E-value: 6.2e-29
                 T-EEEEEEETTEEEEEEE-HHHHHHHHCTT---HHHHBSSSS-EEETTTTEE--HHHHHHHHS---HHHHHHHHHHHSEEE--HHHHH CS
        SBDS   1 nvsivrykkgkkrFeiavyknklleyregkeidLsevlqsekiFtnaskGetaskselekafgteskdeiikeILkkGeiqvsaeerk 88 
                 n  ivr+k+++krFe+a y n++  +r++ e +++evlq+++iF+n++kG  a+ +++  afgt+++d+++ e+L++Ge q s+eer+
  KOO21151.1  14 NICIVRLKRNGKRFEVAAYRNTVVAWRNKVEKNIDEVLQVHTIFENVEKGILAKSEDMLDAFGTDDEDKVCVEVLDRGEFQMSEEERQ 101
                 5679*********************************************************************************985 PP

  == domain 2  score: -3.3 bits;  conditional E-value: 2.2
                 ETTTTEE--HHHHHHHH CS
        SBDS  46 naskGetaskselekaf 62 
                 na+kG+ + + e+ kaf
  KOO21151.1 310 NAEKGDPVAQLEVGKAF 326
                 88999999988888888 PP

>> SBDS_C  SBDS protein C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   83.8   0.0     2e-27   8.8e-24       2     114 ..     108     243 ..     107     245 .. 0.83

  Alignments for each domain:
  == domain 1  score: 83.8 bits;  conditional E-value: 2e-27
                 HHHHHHHHHHHEEBTTTTB---HHHHHHHHH.HTT----TTS-CCCCHHHHHHHHT..TTS--EE-EEEEEEEE-...CCCHHHHHHHH.HH.....S. CS
      SBDS_C   2 ekeiieivaeklvnpqtkrpytttmIekalk.elgtsvktnksaksQalevikaLi..qeipiqrarmrlritcptsikdkilklieqv.esqkvaeke 96 
                 ++++++ v++++vnp+t+ py+ + Ie+a++  l++   tnksak Qal+vi++L+  + +pi+rarm+lr+ +pt++  k++ +++ + e++   +  
  KOO21151.1 108 FRDVASRVTDMCVNPETRLPYPLSTIERAMReTLHFAPATNKSAKMQALQVIRQLEvaNVVPIARARMQLRLLVPTEELAKMQTALQALaEAEAAGG-A 205
                 79****************************9899*********************999********************9999999999955544333.3 PP

                 EE...................EEEE.EEGGGHHHHHHH CS
      SBDS_C  97 we...................vvvl.iePgaykeleef 114
                  e                    +++  +P++++ l+e+
  KOO21151.1 206 SErlqlntpepaadaaavpmsAIGChSDPSLFRPLSEL 243
                 22233445556666677777755555999999999986 PP

>> Sel1  Sel1 repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.1   0.0     2e-08   8.8e-05       1      37 [.     316     350 ..     316     351 .. 0.96

  Alignments for each domain:
  == domain 1  score: 23.1 bits;  conditional E-value: 2e-08
        Sel1   1 aeAmyrLGmfylylnGlgvpkDpekAiewyekAAeqG 37 
                 + A+  +G   ++l+G gv++D++++  w+++AA+qG
  KOO21151.1 316 PVAQLEVG--KAFLDGMGVEADVQQGKDWLRQAAQQG 350
                 579*****..**************************9 PP

>> DUF4170  Domain of unknown function (DUF4170)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.4   0.0     0.019        86      34      53 ..      31      50 ..      28      58 .. 0.85
   2 ?    6.5   0.1    0.0021       9.2      27      56 ..     328     357 ..     324     361 .. 0.84

  Alignments for each domain:
  == domain 1  score: 3.4 bits;  conditional E-value: 0.019
                SHHHHHHHHHHHHCCTSS-S CS
     DUF4170 34 dyaeAeaaWkakaqrtvDnA 53
                 y +   aW+ k ++ +D+ 
  KOO21151.1 31 AYRNTVVAWRNKVEKNIDEV 50
                5889999***********85 PP

  == domain 2  score: 6.5 bits;  conditional E-value: 0.0021
                 ---B--SSHHHHHHHHHHHHCCTSS-SSBE CS
     DUF4170  27 divGifpdyaeAeaaWkakaqrtvDnAemr 56 
                 d +G+ +d ++ ++  +++aq+ vD A++r
  KOO21151.1 328 DGMGVEADVQQGKDWLRQAAQQGVDAAKIR 357
                 5567778888888888************99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (367 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       702  (0.0391544); expected 358.6 (0.02)
Passed bias filter:                      460  (0.0256568); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.51u 0.25s 00:00:00.76 Elapsed: 00:00:00.43
# Mc/sec: 2553.00
//
Query:       KOO21152.1  [L=521]
Description: fad dependent oxidoreductase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.2e-28   99.3   5.4    2.9e-27   96.2   5.4    2.1  1  DAO             FAD dependent oxidoreductase
    2.2e-07   31.0   0.1    9.8e-07   28.9   0.1    2.2  1  NAD_binding_8   NAD(P)-binding Rossmann-like domain
      6e-07   28.9   6.1    1.6e-05   24.2   6.1    2.3  1  FAD_binding_2   FAD binding domain
    1.2e-05   24.7   0.1    2.4e-05   23.7   0.1    1.5  1  Pyr_redox_2     Pyridine nucleotide-disulphide oxidoreductase
    2.9e-05   24.5   0.0    0.00014   22.4   0.0    2.1  2  Pyr_redox       Pyridine nucleotide-disulphide oxidoreductase
    6.8e-05   22.3   0.1    0.00012   21.4   0.1    1.4  1  FAD_binding_3   FAD binding domain
     0.0011   18.5   0.3     0.0028   17.1   0.2    1.8  2  FAD_oxidored    FAD dependent oxidoreductase
     0.0013   18.0   0.2     0.0071   15.6   0.1    1.9  2  Thi4            Thi4 family
     0.0015   17.8   0.1     0.0015   17.8   0.1    1.9  2  AlaDh_PNT_C     Alanine dehydrogenase/PNT, C-terminal domain
     0.0055   17.0   0.0      0.012   15.8   0.0    1.6  1  TrkA_N          TrkA-N domain
  ------ inclusion threshold ------
       0.01   16.3   0.0      0.023   15.2   0.0    1.6  1  XdhC_C          XdhC Rossmann domain
      0.012   14.3   0.1      0.018   13.7   0.1    1.2  1  HI0933_like     HI0933-like protein
      0.016   14.3   0.1      0.038   13.0   0.0    1.7  1  Lycopene_cycl   Lycopene cyclase protein
      0.026   13.6   0.0       0.04   13.0   0.0    1.3  1  GIDA            Glucose inhibited division protein A
      0.027   14.1   0.0      0.058   13.0   0.0    1.6  1  ApbA            Ketopantoate reductase PanE/ApbA
      0.028   14.5   0.1      0.052   13.6   0.1    1.4  1  AdoHcyase_NAD   S-adenosyl-L-homocysteine hydrolase, NAD bind
      0.034   13.4   0.0      0.049   12.9   0.0    1.2  1  Pyr_redox_3     Pyridine nucleotide-disulphide oxidoreductase
      0.061   13.2   0.0        0.1   12.5   0.0    1.4  1  3HCDH_N         3-hydroxyacyl-CoA dehydrogenase, NAD binding 
      0.093   12.3   0.2       0.14   11.7   0.2    1.2  1  UDPG_MGDP_dh_N  UDP-glucose/GDP-mannose dehydrogenase family,


Domain annotation for each model (and alignments):
>> DAO  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   96.2   5.4   3.1e-30   2.9e-27       1     351 [.      18     476 ..      18     477 .. 0.68

  Alignments for each domain:
  == domain 1  score: 96.2 bits;  conditional E-value: 3.1e-30
                 EEEEECTSHHHHHHHHHHHHTT..EEEEESSSSTTSSGGGSSEEEEESSSSTHHSTHHHHHHHHHHHHHHHHHHHHHSSTTSEEEEEEEEEESSHHHHH CS
         DAO   1 dvviiGGGiiGlstAyeLarrg..VtllekgdiagsgaSgrnsgllhsglrylpeaselarlslealeelreleeelgididyrrtGllslaadeeele 97 
                 d vi+G+G++G+++A++L+rrg  V+++++++ ++  +S  ++   + ++    ++ ++  ++ +++++l+  ++e +  + + r+G+ +l a++e ++
  KOO21152.1  18 DAVIVGAGVVGVACAHYLSRRGarVLIVDSRPPLS-YTSAMSTECYRTYF---GDHVQMTAFMNRSVDLLETRAAECDNAFSLNRRGYCFLSATDEGKA 112
                 78*****************************8888.99999999999954...4445999**********99999977779**********87653333 PP

                 HHH..............................HHHHHHHHTTTTE.EEEEH.HHHHHHSTTST......TTSEEEEETTEEEEEHHHHHHHHHHHHHH CS
         DAO  98 ald..............................kllallleaglda.ellda.eevrelepalp......gllgalfypdtgqvdpakltaalaraaea 158
                   +                              ++la   +a +d  +++ + + vr  +  lp      +++  l++  +g++ ++++   l+  a+a
  KOO21152.1 113 --KhvaqaaaaatlghtggavhkdgghgvryrgDKLAY--DAAVDGiSVFQGhDAVRSFFGELPadfvsaETKSLLHCGRAGWMSAQQMGTQLLLGARA 207
                 ..233456677777777777777777777666633333..2233444666665678877766445455556666699********************** PP

                 TT-EEEESECEEEEEEEE..TCEEEEEEECT.EEE.E.....EEEEEEE--GGGHHHHHTTCTTTSEEEEEEEEEEEEEECCTHSTGSGCSEEEEE... CS
         DAO 159 lGveilegtevtgleeed..gkvwgverttp.gen.d.....aadavVnaaGawsdllgllkeldlpispvrgqvlvlkplseklvspaailpvpe... 245
                 +G++ l+ + v+g+   d   +v+gv  t + g+  +     a+ avVn+aG++++++   +el   +++ r  +l  +  + + +++a  +++p+   
  KOO21152.1 208 AGARTLTPASVVGVTTADegARVSGV--TVQlGADpSahthvACGAVVNCAGPFAGEM---GEL--LVRASRPRSLLGATSEAAANAHARAFTLPFvne 299
                 *************9554445899999..455555433444457788*********988...666..567777777666444444444456666665555 PP

                 .......EEETTTTEEEEEE.............TTSEEEEEESSE................................................EETTCS CS
         DAO 246 .......tdddgrgvyvtpr.............kdgrvlvGgtad................................................eesgdd 276
                        +d  g ++    +                        +                                                +     
  KOO21152.1 300 ihakamlRDPLGAVPMTA-PmmiwedevelrwaD----------EertallemggfeatlarplpggahfrpypgatgtvvmlwealhmdmhvP----- 382
                 666444233333333333.257754444444330..........23455555555556777777777777777777777777777666554332..... PP

                 STSCSHH............HHHHHHHHHHHHSGGG.....CG......EEEEEEEEEE.ETTSSEEEEEEETEE.EEEEEEECTTTHHHHHHHHHHHHH CS
         DAO 277 dpevdee............didellealrklfPql.....gd......vlrkwaGlrp.lpdglpligetpgvk.glylatGhsghGltlapatGklla 350
                       +             ++ l++ l++++P+l     +d       ++   G+++ +pd+lplig +pg + g ++++G sg G++ + a+G+lla
  KOO21152.1 383 ------ApappepqlrgalFAELLIRGLSTMVPKLaecylADdgsmqaTVSVDGGYYTkTPDNLPLIGAVPGAPaGSFVCAGLSGYGVMASNAAGELLA 475
                 ......022333334444444449999*******644444223443322235557888669********997777***********************9 PP

                 H CS
         DAO 351 e 351
                  
  KOO21152.1 476 A 476
                 5 PP

>> NAD_binding_8  NAD(P)-binding Rossmann-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.9   0.1     1e-09   9.8e-07       1      31 [.      21      51 ..      21      67 .. 0.92

  Alignments for each domain:
  == domain 1  score: 28.9 bits;  conditional E-value: 1e-09
                   EE--SHHHHHHHHHHHCCTEEEEEE-SSSSS CS
  NAD_binding_8  1 IvGaGlsGlvaAylLakagfdvlllekrdrl 31
                   IvGaG+ G ++A++L+++g++vl++++r+ l
     KOO21152.1 21 IVGAGVVGVACAHYLSRRGARVLIVDSRPPL 51
                   9**************************9866 PP

>> FAD_binding_2  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.2   6.1   1.7e-08   1.6e-05       1     215 [.      18     271 ..      18     316 .. 0.67

  Alignments for each domain:
  == domain 1  score: 24.2 bits;  conditional E-value: 1.7e-08
                    SEEEE--SHHHHHHHHHHHHTTT-EEEEESSSGGGSGGGG-.-S-EE-TT..SSGGSTC.CHHHHHHHHHHHHT.....................T CS
  FAD_binding_2   1 DviViGsGlAGLaAAleaaeaGlkvavvekeqefggataws.qGgidavlspeqkkagikdspelhrtdtlkal.....................d 74 
                    D++++G+G+ G a+A+ ++++G++v++v+  ++ + ++a+s +      + + q  a  ++s++  + +t++a                       
     KOO21152.1  18 DAVIVGAGVVGVACAHYLSRRGARVLIVDSRPPLSYTSAMStECYRTYFGDHVQMTAFMNRSVD--LLETRAAEcdnafslnrrgycflsatdegK 111
                    89***************************************44555555666665555544444..444444433344444444444444443332 PP

                    T-S.-HHHHHHHHHTHHHHHHHHHHTT----BCCTSSB-EEE-TT-SST................................EEEE-.STT-..... CS
  FAD_binding_2  75 ela.dqplveafveaapeavdeLeelgvpfsrtedgpvdvrelGglsat................................artlhdaadarretl 137
                      + +q+++ a + + + av+             dg  +vr +G+  a                                 + +l ++++a    +
     KOO21152.1 112 AKHvAQAAAAATLGHTGGAVHK------------DGGHGVRYRGDKLAYdaavdgisvfqghdavrsffgelpadfvsaetK-SLLHCGRA---GW 191
                    2222333333333333333333............444444444444444555555555555666677777777789998853.33336665...89 PP

                    .HHHHHHHHHHHHHHTCTEEEEESEEEEEEEECTT..EEEEEEEEETTTTCEEEEEES.EEEE-----GG..........G CS
  FAD_binding_2 138 vtghallarlvesarkagvdfqerteadeLivedg..rvtGavvenpesgrevrirak.avvlatgGfgrallkellgaaa 215
                    ++ +++   l+ +ar+ag + ++ ++++ +++ d+  rv+G++v+  ++++ ++ +a  avv  +g f + ++ ell +a 
     KOO21152.1 192 MSAQQMGTQLLLGARAAGARTLTPASVVGVTTADEgaRVSGVTVQLGADPSAHTHVACgAVVNCAGPFAG-EMGELLVRAS 271
                    9*****************9***********9966668********99****9*99999889888888886.4444444444 PP

>> Pyr_redox_2  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.7   0.1   2.5e-08   2.4e-05     143     189 ..      17      62 ..       2      88 .. 0.77

  Alignments for each domain:
  == domain 1  score: 23.7 bits;  conditional E-value: 2.5e-08
                  SEEEEES-SHHHHHHHHHHHHHT-EEEEEESSSSSSTTS-HHHHHHH CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2 143 krivvvGgGyiGvElAaalaklgkevtlveardrllraldkelsaal 189
                   ++v+vG+G++Gv +A +l++ g++v +v+ r+ l   +  + ++++
   KOO21152.1  17 VDAVIVGAGVVGVACAHYLSRRGARVLIVDSRPPLS-YTSAMSTECY 62 
                  5789***********************999999885.3444444444 PP

>> Pyr_redox  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.4   0.0   1.5e-07   0.00014       2      43 ..      19      58 ..      18      87 .. 0.84
   2 ?   -1.5   0.0       4.2     4e+03      48      78 ..     203     235 ..     193     239 .. 0.63

  Alignments for each domain:
  == domain 1  score: 22.4 bits;  conditional E-value: 1.5e-07
                EEEECSSHHHHHHHHHHHHTTSEEEEEESSSSSSTTSSHHHH CS
   Pyr_redox  2 vvvvGgGyiglElAgalaelgkkVtvversdkllrllDeeas 43
                +v+vG+G++g+ +A +l++ g++V +v+ ++ l   +  ++s
  KOO21152.1 19 AVIVGAGVVGVACAHYLSRRGARVLIVDSRPPLS--YTSAMS 58
                69**************************999887..555554 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 4.2
                 HHHHHTTEEEECSEEEEEEEEETTS..EEEEEE CS
   Pyr_redox  48 eklekngievllntkveeiegsedg..vesvkl 78 
                    ++ g + l+ ++v+ +++ ++g  v++v++
  KOO21152.1 203 LGARAAGARTLTPASVVGVTTADEGarVSGVTV 235
                 445666777777777777776655546666665 PP

>> FAD_binding_3  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.4   0.1   1.3e-07   0.00012       2      40 ..      17      55 ..      16      64 .. 0.90

  Alignments for each domain:
  == domain 1  score: 21.4 bits;  conditional E-value: 1.3e-07
                   EEEEEE--SHHHHHHHHHHHHTTHHEEEEESSSSSCCSS CS
  FAD_binding_3  2 tdVlIVGaGpaGlmlallLseaGvrvvlvekrsttvvlp 40
                   +d +IVGaG +G+  a+ Ls++G rv++v+ r   ++++
     KOO21152.1 17 VDAVIVGAGVVGVACAHYLSRRGARVLIVDSRPPLSYTS 55
                   6899**************************998877765 PP

>> FAD_oxidored  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   0.2     3e-06    0.0028       1      34 [.      18      51 ..      18     134 .. 0.86
   2 ?   -1.7   0.0       1.5   1.4e+03      95     126 ..     200     236 ..     190     273 .. 0.69

  Alignments for each domain:
  == domain 1  score: 17.1 bits;  conditional E-value: 3e-06
  FAD_oxidored  1 DvvVvGGgpaGvaAAiaAaraGakvlLveergvl 34
                  D v+vG+g+ Gva+A    r+Ga+vl+v+ r+ l
    KOO21152.1 18 DAVIVGAGVVGVACAHYLSRRGARVLIVDSRPPL 51
                  779**************************99866 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 1.5
  FAD_oxidored  95 eml...aeagvtvllntrlvevek..egkriesvtve 126
                   ++l   + ag + l+ + +v+v++  eg r+ +vtv+
    KOO21152.1 200 QLLlgaRAAGARTLTPASVVGVTTadEGARVSGVTVQ 236
                   4445666677888888888888884335778888885 PP

>> Thi4  Thi4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.1   7.5e-06    0.0071      18      49 ..      17      47 ..       4      53 .. 0.90
   2 ?   -0.5   0.0      0.62   5.8e+02     111     151 ..     208     249 ..     193     269 .. 0.81

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 7.5e-06
                EEEEEE--SHHHHHHHHHHHHCTTS-EEEEES CS
        Thi4 18 sDvvivGaGssGLtaayylakkpdlkvailer 49
                 D vivGaG  G+++a+yl+++ + +v+i+++
  KOO21152.1 17 VDAVIVGAGVVGVACAHYLSRR-GARVLIVDS 47
                699*******************.*****9987 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 0.62
                 TTEEEEESEEEEEEEEETB.TEEEEEEEEEHHHHTCTTTSS. CS
        Thi4 111 anvkllnavaveDlivreg.egvaGvvinwtlvelahdtqsc 151
                 a+++ l+  +v  + + ++  +v+Gv ++  +   ah + +c
  KOO21152.1 208 AGARTLTPASVVGVTTADEgARVSGVTVQLGADPSAHTHVAC 249
                 788888888999999988559******999998888866666 PP

>> AlaDh_PNT_C  Alanine dehydrogenase/PNT, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.8   0.1   1.6e-06    0.0015      29      62 ..      17      50 ..       5     120 .. 0.82
   2 ?   -3.8   0.3       6.7   6.3e+03      19      44 ..     442     470 ..     437     476 .. 0.65

  Alignments for each domain:
  == domain 1  score: 17.8 bits;  conditional E-value: 1.6e-06
                 -EEEEESTSHHHHHHHHHHHHTT-EEEEEESSHH CS
  AlaDh_PNT_C 29 akvlviGgGvaGlqAiatakglgakVtvlDvrpa 62
                    +++G+Gv+G++ ++  ++ ga+V ++D rp 
   KOO21152.1 17 VDAVIVGAGVVGVACAHYLSRRGARVLIVDSRPP 50
                 4789***************************986 PP

  == domain 2  score: -3.8 bits;  conditional E-value: 6.7
                  TTCEETCB---EEEEES...TSHHHHHHH CS
  AlaDh_PNT_C  19 laGgvpgvepakvlviG...gGvaGlqAi 44 
                  l+G vpg+ ++  +  G    Gv   +A+
   KOO21152.1 442 LIGAVPGAPAGSFVCAGlsgYGVMASNAA 470
                  67889988888887765111466666655 PP

>> TrkA_N  TrkA-N domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.0   1.3e-05     0.012       2      50 ..      20      70 ..      19      92 .. 0.80

  Alignments for each domain:
  == domain 1  score: 15.8 bits;  conditional E-value: 1.3e-05
                EEES-SHHHHHHHHHHHHTTEEEEEEESSHHH..HHHHHHTTSEEEES-TT CS
      TrkA_N  2 iiiGlGrvGrslaeeLseggkdvvvidkdeer..veelreeglevvvgdat 50
                +i+G+G vG + a++Ls++g +v+++d+++       ++ e ++++ gd  
  KOO21152.1 20 VIVGAGVVGVACAHYLSRRGARVLIVDSRPPLsyTSAMSTECYRTYFGDHV 70
                8*****************6667******99443255555666778877765 PP

>> XdhC_C  XdhC Rossmann domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.2   0.0   2.4e-05     0.023       2      45 ..      20      69 ..      19     129 .. 0.71

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 2.4e-05
                EEE--STTHHHHHHHHHHHTEEEEEEES-GGGG-GGG-TT-SE......- CS
      XdhC_C  2 vifGaghvaqalarlaaalgfrvtvvdpreefatkerfpeade......t 45
                vi+Gag v+ a+a+++++ g rv +vd+r+ +  ++ + ++        +
  KOO21152.1 20 VIVGAGVVGVACAHYLSRRGARVLIVDSRPPLSYTSAMSTECYrtyfgdH 69
                79****************************87744444422214444441 PP

>> HI0933_like  HI0933-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.1     2e-05     0.018       2      33 ..      18      49 ..      17      58 .. 0.92

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 2e-05
                 SEEEE--SHHHHHHHHHHHHTT--EEEE-SSS CS
  HI0933_like  2 dviviGgGaAGlmaAisaakrgkrVlllekak 33
                 d +++G+G  G+ +A  +++rg+rVl++++ +
   KOO21152.1 18 DAVIVGAGVVGVACAHYLSRRGARVLIVDSRP 49
                 789*************************9865 PP

>> Lycopene_cycl  Lycopene cyclase protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.0     4e-05     0.038       1      47 [.      18      62 ..      18     100 .. 0.83

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 4e-05
  Lycopene_cycl  1 DvvviGaGpAglslAarlteakpglkvvlieaspsllfpnnyvWsde 47
                   D v++GaG  g++ A+ l  ++ g +v+++++ p l ++   + +++
     KOO21152.1 18 DAVIVGAGVVGVACAHYL--SRRGARVLIVDSRPPLSYTSAMSTECY 62
                   88****************..************999988887755544 PP

>> GIDA  Glucose inhibited division protein A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.0   4.2e-05      0.04       1      29 [.      18      50 ..      18      99 .. 0.82

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 4.2e-05
                CEEEE-SSHHHHHHHHHHHHTT--EEEE....E CS
        GIDA  1 dviViGgGhAGceAAlaaarlGakvlLi....t 29
                d +++G+G  G+++A  ++r+Ga+vl++     
  KOO21152.1 18 DAVIVGAGVVGVACAHYLSRRGARVLIVdsrpP 50
                579***********************9966541 PP

>> ApbA  Ketopantoate reductase PanE/ApbA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.0   6.1e-05     0.058       2      31 ..      20      49 ..      19      81 .. 0.90

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 6.1e-05
                EEES-SHHHHHHHHHHHHHTHCEEEE-SCH CS
        ApbA  2 ailGaGaiGsllaakLakagadvtlilrsr 31
                +i+GaG +G  +a++L++ ga v +++ ++
  KOO21152.1 20 VIVGAGVVGVACAHYLSRRGARVLIVDSRP 49
                69**********************999887 PP

>> AdoHcyase_NAD  S-adenosyl-L-homocysteine hydrolase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.1   5.5e-05     0.052      25      64 ..      18      57 ..       5      75 .. 0.81

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 5.5e-05
                   EEEEE--SHHHHHHHHHHHHCT-EEEEE-S-HHHHHHHHC CS
  AdoHcyase_NAD 25 vavvaGyGdvGkGcaaslkglGarvivtevdPicalqaam 64
                    av++G G vG  ca+ l   Garv++ +  P  +  +am
     KOO21152.1 18 DAVIVGAGVVGVACAHYLSRRGARVLIVDSRPPLSYTSAM 57
                   489************************9888766666665 PP

>> Pyr_redox_3  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   5.2e-05     0.049       1      29 [.      20      47 ..      20      57 .. 0.93

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 5.2e-05
  Pyr_redox_3  1 iIiGaGPaGlaaaielkkagledylilEk 29
                 +I+GaG  G+a+a+ l + g  ++li++ 
   KOO21152.1 20 VIVGAGVVGVACAHYLSRRGA-RVLIVDS 47
                 7*******************9.79**986 PP

>> 3HCDH_N  3-hydroxyacyl-CoA dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   0.00011       0.1       3      32 ..      20      49 ..      18      78 .. 0.91

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 0.00011
                EEE--SCCHHHHHHHHHHTT-EEEEE-S-H CS
     3HCDH_N  3 aviGaGtmGagiaavfasagleVvlvdise 32
                 ++GaG++G   a+ + ++g +V +vd ++
  KOO21152.1 20 VIVGAGVVGVACAHYLSRRGARVLIVDSRP 49
                59*************************865 PP

>> UDPG_MGDP_dh_N  UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.2   0.00015      0.14       4      31 ..      20      47 ..      17      50 .. 0.93

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.00015
                    EEE--STTHHHHHHHHHHCTSEEEEE-S CS
  UDPG_MGDP_dh_N  4 sviGlGYvGlvtaavlaeighevigvDi 31
                    +++G+G vG+ +a  l+++g  v++vD 
      KOO21152.1 20 VIVGAGVVGVACAHYLSRRGARVLIVDS 47
                    69*************************6 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (521 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       460  (0.0256568); expected 358.6 (0.02)
Passed bias filter:                      345  (0.0192426); expected 358.6 (0.02)
Passed Vit filter:                        59  (0.00329076); expected 17.9 (0.001)
Passed Fwd filter:                        19  (0.00105974); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              19  [number of targets reported over threshold]
# CPU time: 0.60u 0.27s 00:00:00.87 Elapsed: 00:00:00.42
# Mc/sec: 3688.08
//
Query:       KOO21153.1  [L=246]
Description: hypothetical protein Ctob_003155 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (246 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       602  (0.0335769); expected 358.6 (0.02)
Passed bias filter:                      423  (0.0235931); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.43u 0.26s 00:00:00.69 Elapsed: 00:00:00.41
# Mc/sec: 1788.94
//
Query:       KOO21154.1  [L=149]
Description: fkbp-type peptidylprolyl cis-trans isomerase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.8e-33  114.7   0.0    2.2e-33  114.4   0.0    1.1  1  FKBP_C    FKBP-type peptidyl-prolyl cis-trans isomerase


Domain annotation for each model (and alignments):
>> FKBP_C  FKBP-type peptidyl-prolyl cis-trans isomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  114.4   0.0   1.2e-37   2.2e-33       5      94 .]      50     139 ..      46     139 .. 0.97

  Alignments for each domain:
  == domain 1  score: 114.4 bits;  conditional E-value: 1.2e-37
                 B-TTCEEEEEEEEEET.TSSEEEEHCCHTSEEEEETTSSSSCHHHHHHHTTSBTT-EEEEEEEGGGTTTTTTBCTTTB.TTSEEEEEEEEE CS
      FKBP_C   5 akegdtVtvhykgkle.dgkvfdssrsrakplefkvGsgqvikGfeealegmkvGekrtltippelaYgekglaggvippnatLvFeveLl 94 
                  k+gdt ++hy+g+l  d ++fdssr+r+ p++f++G+g+vikG++ +l+gm+vGekr+ltip++laYg++g  g +ip+++tL FeveLl
  KOO21154.1  50 SKPGDTLSMHYTGTLYsDCSKFDSSRDRGDPFKFTLGKGEVIKGWDAGLRGMCVGEKRKLTIPSDLAYGDEGS-GDKIPAKSTLQFEVELL 139
                 799************99********************************************************.99*************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (149 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       193  (0.0107647); expected 358.6 (0.02)
Passed bias filter:                      187  (0.01043); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.21s 00:00:00.57 Elapsed: 00:00:00.37
# Mc/sec: 1194.06
//
Query:       KOO21155.1  [L=277]
Description: superoxide dismutase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      9e-41  139.4   1.2    1.7e-22   80.1   0.3    2.1  2  Sod_Cu    Copper/zinc superoxide dismutase (SODC)


Domain annotation for each model (and alignments):
>> Sod_Cu  Copper/zinc superoxide dismutase (SODC)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.1   0.0   5.9e-20   1.1e-15       6      66 ..      66     122 ..      62     129 .. 0.89
   2 !   80.1   0.3   9.3e-27   1.7e-22      64     142 .]     149     243 ..     140     243 .. 0.95

  Alignments for each domain:
  == domain 1  score: 58.1 bits;  conditional E-value: 5.9e-20
                 EEEEEEEEEEECSTTSTCEEEEEEEECSS-STEEEEEEEESSTTTTTTTGGG-SB-STT-. CS
      Sod_Cu   6 gevsGtvtftqeeskesgsvevtvevkglppggkhgfHiHengdcsagfksagghfnptgk 66 
                 g vsG+vt+t++++   g + + ++v+gl+pg +hgfHiHe +d s+g+ sag+h+np+g+
  KOO21155.1  66 GRVSGSVTLTEQPN---GDTLIAWDVTGLSPG-EHGFHIHESADFSNGCVSAGPHYNPFGT 122
                 689*******9873...5599*********97.5************************986 PP

  == domain 2  score: 80.1 bits;  conditional E-value: 9.3e-27
                 T-.CSSTTTTTCS-TTEEEEEEESTTSEEEEEEEEESC.BCSTTTBCTTEEEEEESS---TT.................SCHHHTTSSSEEEEEEE CS
      Sod_Cu  64 tgkkhgapndeerhaGDLgnievdadgtakleittdklvslkgensilgralvihagaDdlg.................eskptgnagariacGvI 142
                  gk+hg+pnd++rh+GDLgni++d  g+ak ++  d+lv+l g+ s++gr++++ha++Ddlg                  sk tgnagar+ cG I
  KOO21155.1 149 AGKNHGGPNDKDRHVGDLGNIKADVTGRAKGQMI-DSLVKLRGPYSVIGRSMMVHADPDDLGrgdnskahepgppkngfVSKITGNAGARLVCGEI 243
                 5699****************************98.********99******************************99999**************87 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (277 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       200  (0.0111551); expected 358.6 (0.02)
Passed bias filter:                      152  (0.00847788); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.24s 00:00:00.64 Elapsed: 00:00:00.41
# Mc/sec: 2033.54
//
Query:       KOO21156.1  [L=311]
Description: hypothetical protein Ctob_000095 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    4.4e-08   33.1   0.5    0.00032   20.4   0.0    2.4  3  Amidoligase_2  Putative amidoligase enzyme


Domain annotation for each model (and alignments):
>> Amidoligase_2  Putative amidoligase enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.5   0.1   1.9e-05      0.34     101     146 ..      32      82 ..      12      94 .. 0.78
   2 !   20.4   0.0   1.8e-08   0.00032     214     253 .]     215     253 ..     199     253 .. 0.89
   3 ?   -3.2   0.0      0.29   5.1e+03      97     189 ..     273     293 ..     261     304 .. 0.58

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 1.9e-05
  Amidoligase_2 101 Lreagavgtnas......cglhvHldaevpdleaetlrnllkilalledwle 146
                    L+++ga +t  s      +++hvH++  +p+    tl++ ++ l +l +w++
     KOO21156.1  32 LASTGAAATSISavghsaTAIHVHVNVRNPAA-GGTLLSAVELLGVLFAWIR 82 
                    555555555444445556*************5.8999999999999988887 PP

  == domain 2  score: 20.4 bits;  conditional E-value: 1.8e-08
  Amidoligase_2 214 nflnlksrlkerpTvEfRlpngtldaeeikawirlclalv 253
                     ++nl  ++++++T+EfR + g+lda+ i +w+ +c+a+v
     KOO21156.1 215 CSINLM-AIRKHGTLEFRRFHGSLDATLIVRWAHFCVAFV 253
                    567888.889899************************986 PP

  == domain 3  score: -3.2 bits;  conditional E-value: 0.29
  Amidoligase_2  97 lvraLreagavgtnascglhvHldaevpdleaetlrnllkilalledwleklldvdlarrlnpyckpldeeyvervrleasksatldeliddy 189
                    +++aL+ a +++                                                                        t del+ ++
     KOO21156.1 273 ALQALQTAQEEA------------------------------------------------------------------------TADELMACM 293
                    444444444444........................................................................444444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (311 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       496  (0.0276647); expected 358.6 (0.02)
Passed bias filter:                      344  (0.0191868); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.23s 00:00:00.66 Elapsed: 00:00:00.38
# Mc/sec: 2479.26
//
Query:       KOO21157.1  [L=318]
Description: alanine racemase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.7e-16   60.5   0.1    2.1e-16   60.2   0.1    1.1  1  Ala_racemase_N  Alanine racemase, N-terminal domain
    5.3e-06   27.0   1.1    2.9e-05   24.7   0.1    2.4  2  D-ser_dehydrat  Putative serine dehydratase domain


Domain annotation for each model (and alignments):
>> Ala_racemase_N  Alanine racemase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.2   0.1   2.4e-20   2.1e-16      19     216 ..       8     223 ..       1     226 [. 0.83

  Alignments for each domain:
  == domain 1  score: 60.2 bits;  conditional E-value: 2.4e-20
                     TTSEEEEE-HHHHHTTHHHHHHHHHHHTTESEEEESSHHHHHHHHHTTSCSEEEEESCSTGGGHHHHHH.....TTEEEEESSHHHHHHHHHHHH CS
  Ala_racemase_N  19 pgaklmavvKanayghgavevaralaeggadgfgvatleEalelreagitapilvlegfspeelaalae.....ydltvtvdsleqlealaaaar 108
                      g+ l++++K+  + ++a  +a     g  ++++v+t++Ea   ++ag++  il+  + ++++++++ +     ++++v++d+ eq+ al a ++
      KOO21157.1   8 LGCSLRPHLKT-CKTVEAGVIAT---GGTRRRVTVSTIAEAKFFADAGFDD-ILYAVPLTADKVDDVEKlhaglAQFHVMIDHAEQAAALIARLS 97 
                     36779******.88888888888...45579*****************776.88888855555555544555877*************9999998 PP

                     H.......TTS-EEEEEEBESSSSSSSBSCHHH..HHHHHHHHHTTTEEEEEEE-S-SST....TSTS....HHHHHHHHHHHHHHHHHHHTTGG CS
  Ala_racemase_N 109 e.......agkplrvhlkidtgmgRlGftpeel..eellealaalpglrleglmtHfasa....depd....eeteaqlarfeealeelekaglr 186
                     +         +pl v++ +d+g +R G++p++    +l+  la++   +l g++tH +++       +      +e+++++   ++ +l++ gl+
      KOO21157.1  98 RpevreqmLARPLSVFVGVDCGYHRDGCDPNDPssVALVHMLAESGVTTLAGIYTHGGHSydaaN--AaeivRIAEQERDVTVGFATKLRSIGLN 190
                     89****************************55545788888888777************976541..14575677779************999** PP

                     GSEEEEESHHHHHHSGGG...TTEEEESGGGGT CS
  Ala_racemase_N 187 ppvvslanSaaillaaah...fdmvRpGialyG 216
                      p   ++++++  la++h    d+  pG +ly 
      KOO21157.1 191 VPRAGVGSTPTCSLAPSHldgIDEMHPGNFLYY 223
                     ***************878889**********96 PP

>> D-ser_dehydrat  Putative serine dehydratase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.8   0.1     0.085   7.7e+02      51      66 ..      74      89 ..      17     217 .. 0.71
   2 !   24.7   0.1   3.2e-09   2.9e-05      44      96 .]     245     300 ..     218     300 .. 0.79

  Alignments for each domain:
  == domain 1  score: 0.8 bits;  conditional E-value: 0.085
                    .EE-SS-EEEE--TT- CS
  D-ser_dehydrat 51 rrlsdEhgiltleees 66
                    + l + h +++++e++
      KOO21157.1 74 AGLAQFHVMIDHAEQA 89
                    3466666666665443 PP

  == domain 2  score: 24.7 bits;  conditional E-value: 3.2e-09
                     EEEEB-..EE-SS-EEEE--TT-...GGGS-TT-EEEEE-S-HHHHHTT-SEEEEE CS
  D-ser_dehydrat  44 egwvvsvrrlsdEhgiltleees...addlrvGdvvrlipnHaCptvnlhdayvvv 96 
                     e+ ++++++l++E g ++ ++++    +++++G+ +++ p H+C+++++h++++vv
      KOO21157.1 245 EHPELRISNLKQECGEVSTADGApleYARYPIGSLLAIAPHHSCAATHQHQHVYVV 300
                     33344566**********99777999999*************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (318 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       405  (0.0225891); expected 358.6 (0.02)
Passed bias filter:                      370  (0.020637); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.47u 0.25s 00:00:00.72 Elapsed: 00:00:00.41
# Mc/sec: 2307.03
//
Query:       KOO21158.1  [L=911]
Description: DNAj heat shock n-terminal domain-containing protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.2e-27   92.8  20.1    3.8e-06   26.5   0.3    7.1  6  TPR_1            Tetratricopeptide repeat
    5.1e-23   79.3  31.7    1.3e-05   24.9   0.3    8.3  8  TPR_2            Tetratricopeptide repeat
    9.7e-16   57.2  24.5    2.4e-07   30.3   0.6    6.4  7  TPR_11           TPR repeat
    1.3e-13   51.4  27.0      1e-07   32.4   4.3    6.8  7  TPR_16           Tetratricopeptide repeat
    6.7e-13   48.6   2.1    1.1e-12   47.8   0.2    2.4  2  DnaJ             DnaJ domain
    8.8e-13   47.7  16.6      0.008   16.5   0.1    8.0  7  TPR_17           Tetratricopeptide repeat
    1.2e-12   48.1  24.3    2.6e-05   24.6   2.3    6.4  6  TPR_19           Tetratricopeptide repeat
    8.3e-11   41.2  12.3       0.17   12.2   0.3    6.9  7  TPR_8            Tetratricopeptide repeat
    2.8e-10   40.1  37.7       0.02   15.7   0.1    9.8  9  TPR_14           Tetratricopeptide repeat
    8.6e-08   32.3  10.4     0.0015   18.7   2.1    3.7  3  ANAPC3           Anaphase-promoting complex, cyclosome, subun
    1.3e-07   31.6  24.9      2e-05   24.6   1.5    6.7  7  TPR_9            Tetratricopeptide repeat
    2.7e-07   30.8  31.3     0.0013   19.0   1.0    6.0  5  TPR_12           Tetratricopeptide repeat
    0.00013   21.7  15.2       0.54   10.4   0.1    6.5  7  TPR_7            Tetratricopeptide repeat
     0.0013   18.7  11.3        2.9    8.0   0.2    5.1  5  Fis1_TPR_C       Fis1 C-terminal tetratricopeptide repeat
  ------ inclusion threshold ------
      0.018   14.9   0.1       0.38   10.7   0.0    2.9  2  RPT              A repeated domain in UCH-protein
      0.094   12.8  11.9       0.59   10.2   1.1    4.1  3  MIT              MIT (microtubule interacting and transport) 
       0.14   12.0   0.0       0.26   11.1   0.0    1.5  1  Sulfotransfer_2  Sulfotransferase family
       0.16   12.0   0.4         18    5.3   0.0    2.7  2  SRP_TPR_like     Putative TPR-like repeat
       0.18   12.5  23.0         21    6.0   0.2    7.8  7  TPR_6            Tetratricopeptide repeat
          1    9.8  39.5       0.99    9.8   3.6    6.2  5  BTAD             Bacterial transcriptional activator domain


Domain annotation for each model (and alignments):
>> TPR_1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.5   0.3   4.3e-09   3.8e-06       1      34 []      30      63 ..      30      63 .. 0.93
   2 !   12.2   0.1   0.00014      0.12       5      34 .]      68      97 ..      64      97 .. 0.93
   3 ?    1.6   0.0      0.31   2.8e+02      13      29 ..     110     126 ..     105     127 .. 0.85
   4 !   22.1   0.4   1.1e-07   9.5e-05       8      34 .]     251     277 ..     243     277 .. 0.96
   5 !   18.7   0.0   1.2e-06    0.0011       3      33 ..     284     314 ..     282     315 .. 0.92
   6 !   20.8   0.5   2.7e-07   0.00024       2      34 .]     317     349 ..     316     349 .. 0.96

  Alignments for each domain:
  == domain 1  score: 26.5 bits;  conditional E-value: 4.3e-09
                HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH CS
       TPR_1  1 akalynlGnayfklgkydeAleyyekALelnPnn 34
                a+a + +Gn ++k g+y  A++yy+kA++l+P+n
  KOO21158.1 30 AEAAKARGNDLYKRGEYSNAVDYYSKAVRLQPTN 63
                5667789*************************98 PP

  == domain 2  score: 12.2 bits;  conditional E-value: 0.00014
                HHHHHHHHHTT-HHHHHHHHHHHHHHSTTH CS
       TPR_1  5 ynlGnayfklgkydeAleyyekALelnPnn 34
                 n+++a + l++ ++Al +++ ALe +P+n
  KOO21158.1 68 INRAAAALMLERAEDALSDCQAALESEPTN 97
                69***********************99987 PP

  == domain 3  score: 1.6 bits;  conditional E-value: 0.31
                 HTT-HHHHHHHHHHHHH CS
       TPR_1  13 klgkydeAleyyekALe 29 
                  lg++ eA  + e+A +
  KOO21158.1 110 MLGQLSEARRHLERAAT 126
                 69************965 PP

  == domain 4  score: 22.1 bits;  conditional E-value: 1.1e-07
                 HHHHHHTT-HHHHHHHHHHHHHHSTTH CS
       TPR_1   8 GnayfklgkydeAleyyekALelnPnn 34 
                 Gn  f+ g+y eA++ y +ALe++P+n
  KOO21158.1 251 GNEAFSAGRYAEAIQKYTEALEIDPEN 277
                 8999*********************97 PP

  == domain 5  score: 18.7 bits;  conditional E-value: 1.2e-06
                 HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT CS
       TPR_1   3 alynlGnayfklgkydeAleyyekALelnPn 33 
                  + n++ a fk+g+y  A+++++ AL   P 
  KOO21158.1 284 FWTNRATARFKNGEYTAAVADCDAALAAAPR 314
                 59************************98886 PP

  == domain 6  score: 20.8 bits;  conditional E-value: 2.7e-07
                 HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH CS
       TPR_1   2 kalynlGnayfklgkydeAleyyekALelnPnn 34 
                 kal +++++ ++l++y+ A+ +ye+A  ++P++
  KOO21158.1 317 KALLRRAACKLELEDYKGAISDYEEAQAIEPED 349
                 89*****************************86 PP

>> TPR_2  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.9   0.3   1.5e-08   1.3e-05       1      34 []      30      63 ..      30      63 .. 0.96
   2 !   11.5   0.3   0.00029      0.26       4      34 .]      67      97 ..      64      97 .. 0.92
   3 !    7.9   0.1    0.0042       3.8       8      29 ..     105     126 ..      99     127 .. 0.87
   4 ?   -2.6   0.0       9.6   8.6e+03      26      34 .]     223     231 ..     222     231 .. 0.89
   5 ?   -0.3   0.0       1.7   1.5e+03      13      27 ..     240     254 ..     239     256 .. 0.86
   6 !   23.1   0.5   5.6e-08   5.1e-05       7      34 .]     250     277 ..     245     277 .. 0.93
   7 !   14.1   0.0   4.3e-05     0.039       3      34 .]     284     315 ..     282     315 .. 0.94
   8 !   16.2   0.6   8.8e-06    0.0079       2      34 .]     317     349 ..     316     349 .. 0.95

  Alignments for each domain:
  == domain 1  score: 24.9 bits;  conditional E-value: 1.5e-08
       TPR_2  1 aealynlGlayyklgdyeeAleafekAleldPnn 34
                aea  ++G+ +yk+g+y  A++++ kA++l P+n
  KOO21158.1 30 AEAAKARGNDLYKRGEYSNAVDYYSKAVRLQPTN 63
                688899**************************98 PP

  == domain 2  score: 11.5 bits;  conditional E-value: 0.00029
       TPR_2  4 lynlGlayyklgdyeeAleafekAleldPnn 34
                  n++ a++ l + e+Al ++++Ale +P+n
  KOO21158.1 67 RINRAAAALMLERAEDALSDCQAALESEPTN 97
                579**************************97 PP

  == domain 3  score: 7.9 bits;  conditional E-value: 0.0042
       TPR_2   8 GlayyklgdyeeAleafekAle 29 
                 ++a + lg++ eA++++e+A  
  KOO21158.1 105 AKARIMLGQLSEARRHLERAAT 126
                 567789**************76 PP

  == domain 4  score: -2.6 bits;  conditional E-value: 9.6
       TPR_2  26 kAleldPnn 34 
                 +Al+ dP++
  KOO21158.1 223 QALRQDPDH 231
                 8******97 PP

  == domain 5  score: -0.3 bits;  conditional E-value: 1.7
       TPR_2  13 klgdyeeAleafekA 27 
                 +l + eeA++a ++A
  KOO21158.1 240 QLRQIEEAKKAGNEA 254
                 78999*****99988 PP

  == domain 6  score: 23.1 bits;  conditional E-value: 5.6e-08
       TPR_2   7 lGlayyklgdyeeAleafekAleldPnn 34 
                  G+ ++ +g+y+eA++ + +Ale+dP+n
  KOO21158.1 250 AGNEAFSAGRYAEAIQKYTEALEIDPEN 277
                 58999*********************97 PP

  == domain 7  score: 14.1 bits;  conditional E-value: 4.3e-05
       TPR_2   3 alynlGlayyklgdyeeAleafekAleldPnn 34 
                  + n++ a +k+g+y  A++++++Al+ +P++
  KOO21158.1 284 FWTNRATARFKNGEYTAAVADCDAALAAAPRH 315
                 699**************************986 PP

  == domain 8  score: 16.2 bits;  conditional E-value: 8.8e-06
       TPR_2   2 ealynlGlayyklgdyeeAleafekAleldPnn 34 
                 +al +++ + ++l dy+ A+ ++e+A +++P++
  KOO21158.1 317 KALLRRAACKLELEDYKGAISDYEEAQAIEPED 349
                 6899***************************86 PP

>> TPR_11  TPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.3   0.7   1.1e-09     1e-06       1      37 [.      37      73 ..      37      77 .. 0.95
   2 ?   -1.3   0.0         2   1.8e+03      12      31 ..      82     101 ..      79     104 .. 0.83
   3 ?    1.6   0.0      0.26   2.3e+02       7      23 ..     111     127 ..     105     139 .. 0.82
   4 ?   -3.1   0.1       7.2   6.5e+03      19      26 ..     223     230 ..     222     230 .. 0.90
   5 !   30.3   0.6   2.7e-10   2.4e-07       1      30 [.     251     280 ..     251     282 .. 0.96
   6 ?    2.4   0.1      0.14   1.2e+02       3      22 ..     291     310 ..     289     324 .. 0.79
   7 !    7.8   0.4    0.0029       2.6       6      30 ..     328     352 ..     326     359 .. 0.88

  Alignments for each domain:
  == domain 1  score: 28.3 bits;  conditional E-value: 1.1e-09
      TPR_11  1 GdayyeqGkyeeAieaYkkAlkldPdnaeayynLGla 37
                G+ +y++G+y +A+  Y+kA++l P+na+   n+++a
  KOO21158.1 37 GNDLYKRGEYSNAVDYYSKAVRLQPTNATYRINRAAA 73
                99*****************************999987 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 2
      TPR_11  12 eAieaYkkAlkldPdnaeay 31 
                 +A+ + ++Al+  P+n  a+
  KOO21158.1  82 DALSDCQAALESEPTNIKAH 101
                 56666689*********999 PP

  == domain 3  score: 1.6 bits;  conditional E-value: 0.26
      TPR_11   7 qGkyeeAieaYkkAlkl 23 
                 +G++ eA  ++++A  l
  KOO21158.1 111 LGQLSEARRHLERAATL 127
                 8*************877 PP

  == domain 4  score: -3.1 bits;  conditional E-value: 7.2
      TPR_11  19 kAlkldPd 26 
                 +Al+ dPd
  KOO21158.1 223 QALRQDPD 230
                 9******8 PP

  == domain 5  score: 30.3 bits;  conditional E-value: 2.7e-10
      TPR_11   1 GdayyeqGkyeeAieaYkkAlkldPdnaea 30 
                 G++ ++ G+y eAi++Y +Al++dP+na++
  KOO21158.1 251 GNEAFSAGRYAEAIQKYTEALEIDPENADL 280
                 8999************************96 PP

  == domain 6  score: 2.4 bits;  conditional E-value: 0.14
      TPR_11   3 ayyeqGkyeeAieaYkkAlk 22 
                 a ++ G+y++A+++  +Al+
  KOO21158.1 291 ARFKNGEYTAAVADCDAALA 310
                 6799********98777776 PP

  == domain 7  score: 7.8 bits;  conditional E-value: 0.0029
      TPR_11   6 eqGkyeeAieaYkkAlkldPdnaea 30 
                 e+ +y++Ai +Y++A ++ P++ ++
  KOO21158.1 328 ELEDYKGAISDYEEAQAIEPEDQTI 352
                 6789****************98665 PP

>> TPR_16  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.5   1.6   3.5e-08   3.1e-05       2      65 ..      35      95 ..      34      98 .. 0.94
   2 ?   -0.8   1.5       2.9   2.6e+03      10      27 ..     111     128 ..     102     170 .. 0.70
   3 ?   -1.5   0.2       4.6   4.1e+03      22      37 ..     223     235 ..     220     242 .. 0.66
   4 !   32.4   4.3   1.2e-10     1e-07       2      66 ..     249     314 ..     248     316 .. 0.95
   5 !   23.6   5.8   6.7e-08     6e-05       2      63 ..     287     345 ..     286     350 .. 0.93
   6 ?   -2.0   0.0       6.7     6e+03      20      42 ..     566     584 ..     565     585 .. 0.85
   7 ?   -0.6   1.0       2.5   2.2e+03      35      55 ..     694     716 ..     681     720 .. 0.71

  Alignments for each domain:
  == domain 1  score: 24.5 bits;  conditional E-value: 3.5e-08
      TPR_16  2 alaraalragdyddAaaaleaalkrdpssPdaaeAllllgdaalrqgrlaeAaalyraalraap 65
                a++++++++g+y  A+ ++  a++++   P +a  + +++ aal + r ++A+  ++aal+  p
  KOO21158.1 35 ARGNDLYKRGEYSNAVDYYSKAVRLQ---PTNATYRINRAAAALMLERAEDALSDCQAALESEP 95
                689***********************...*****************************997655 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 2.9
      TPR_16  10 agdyddAaaaleaalkrd 27 
                 +g+  +A++ le+a  + 
  KOO21158.1 111 LGQLSEARRHLERAATLP 128
                 566677777777776655 PP

  == domain 3  score: -1.5 bits;  conditional E-value: 4.6
      TPR_16  22 aalkrdpssPdaaeAl 37 
                 +al++d   Pd+ +++
  KOO21158.1 223 QALRQD---PDHSASR 235
                 899999...6665554 PP

  == domain 4  score: 32.4 bits;  conditional E-value: 1.2e-10
      TPR_16   2 alaraalragdyddAaaaleaalkrdpssPd.aaeAllllgdaalrqgrlaeAaalyraalraapd 66 
                 +++++a+ ag+y++A+  +++al+ dp+  d ++ ++ +++ a++++g++++A+a ++aal+aap 
  KOO21158.1 249 KAGNEAFSAGRYAEAIQKYTEALEIDPENADlNVTFWTNRATARFKNGEYTAAVADCDAALAAAPR 314
                 5799**********************87777*********************************96 PP

  == domain 5  score: 23.6 bits;  conditional E-value: 6.7e-08
      TPR_16   2 alaraalragdyddAaaaleaalkrdpssPdaaeAllllgdaalrqgrlaeAaalyraalra 63 
                 ++a+a++++g+y++A+a  +aal+++   P++  All ++ + l++ ++++A+  y++a++ 
  KOO21158.1 287 NRATARFKNGEYTAAVADCDAALAAA---PRHIKALLRRAACKLELEDYKGAISDYEEAQAI 345
                 689***********************...************************999998765 PP

  == domain 6  score: -2.0 bits;  conditional E-value: 6.7
      TPR_16  20 leaalkrdpssPdaaeAllllgd 42 
                 +e++++++   P +a+++l lg 
  KOO21158.1 566 FERFVALN---P-NAQSHLTLGG 584
                 89******...9.9999998875 PP

  == domain 7  score: -0.6 bits;  conditional E-value: 2.5
      TPR_16  35 eAllllgdaal.rqgrlaeAa.a 55 
                 eAl+ l+  ++ r+g  ++A+ +
  KOO21158.1 694 EALYSLASTRArRRGQPDRARlE 716
                 67777777777555777777644 PP

>> DnaJ  DnaJ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.8   0.2   1.3e-15   1.1e-12       1      45 [.     370     419 ..     370     422 .. 0.86
   2 ?   -2.7   0.1       7.6   6.8e+03      23      32 ..     500     509 ..     499     512 .. 0.79

  Alignments for each domain:
  == domain 1  score: 47.8 bits;  conditional E-value: 1.3e-15
                 HHHHHHTSSTTG-HHHHHHHHHHHHHHHSTTTS....CCHH.HHHHHHHH CS
        DnaJ   1 dyYeiLgvskdasedeIkkaYrklalkyHPDkn....pkdp.eaeekFke 45 
                 d+Y++Lg++k+a++ eIkkaY+k+al++HPD+     p+++  ae++Fke
  KOO21158.1 370 DLYKVLGITKNATDHEIKKAYKKKALECHPDRLgsatPEEKaVAEKRFKE 419
                 79*****************************6544455566689999986 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 7.6
                 HHHHHHSTTT CS
        DnaJ  23 klalkyHPDk 32 
                  l   +HPD 
  KOO21158.1 500 MLFHLHHPDS 509
                 57789****6 PP

>> TPR_17  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.8   0.3    0.0012       1.1       1      33 [.      52      84 ..      52      85 .. 0.93
   2 !    8.3   0.0    0.0038       3.4       2      33 ..      87     118 ..      86     119 .. 0.94
   3 !   11.1   0.1   0.00046      0.42       3      34 .]     222     265 ..     221     265 .. 0.92
   4 !   16.5   0.1   8.9e-06     0.008       2      33 ..     267     302 ..     266     303 .. 0.94
   5 ?    1.2   0.1      0.66   5.9e+02       2      33 ..     305     336 ..     304     337 .. 0.91
   6 ?    0.2   0.1       1.5   1.3e+03       3      11 ..     392     400 ..     392     401 .. 0.90
   7 ?    4.4   0.0     0.063        57      14      33 ..     694     714 ..     681     714 .. 0.82

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.0012
      TPR_17  1 lylkaleldPnnadaynnLAelllknGdlmtAr 33
                +y ka++l P+na    n+A + l++ + ++A+
  KOO21158.1 52 YYSKAVRLQPTNATYRINRAAAALMLERAEDAL 84
                599*********************999999986 PP

  == domain 2  score: 8.3 bits;  conditional E-value: 0.0038
      TPR_17   2 ylkaleldPnnadaynnLAelllknGdlmtAr 33 
                 ++ ale +P+n +a+   A++  ++G+l +Ar
  KOO21158.1  87 CQAALESEPTNIKAHVRGAKARIMLGQLSEAR 118
                 799*************************9998 PP

  == domain 3  score: 11.1 bits;  conditional E-value: 0.00046
      TPR_17   3 lkaleldPnnadaynnLAelll............knGdlmtArq 34 
                 l+al++dP+++ + +++A+l              ++G++++A+q
  KOO21158.1 222 LQALRQDPDHSASRQMRAQLRQieeakkagneafSAGRYAEAIQ 265
                 79******************999999999999999999999987 PP

  == domain 4  score: 16.5 bits;  conditional E-value: 8.9e-06
      TPR_17   2 ylkaleldPnn....adaynnLAelllknGdlmtAr 33 
                 y++ale+dP n    + +++n+A++  knG++  A+
  KOO21158.1 267 YTEALEIDPENadlnVTFWTNRATARFKNGEYTAAV 302
                 99*****************************99886 PP

  == domain 5  score: 1.2 bits;  conditional E-value: 0.66
      TPR_17   2 ylkaleldPnnadaynnLAelllknGdlmtAr 33 
                 +  al+  P + +a+  +A + l++ d++ A+
  KOO21158.1 305 CDAALAAAPRHIKALLRRAACKLELEDYKGAI 336
                 5689999*********************9986 PP

  == domain 6  score: 0.2 bits;  conditional E-value: 1.5
      TPR_17   3 lkaleldPn 11 
                 +kale++P+
  KOO21158.1 392 KKALECHPD 400
                 69******7 PP

  == domain 7  score: 4.4 bits;  conditional E-value: 0.063
      TPR_17  14 daynnLAelll.knGdlmtAr 33 
                 +a++ LA + + ++G++++Ar
  KOO21158.1 694 EALYSLASTRArRRGQPDRAR 714
                 89*******97588******7 PP

>> TPR_19  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.5   0.9   0.00018      0.16       1      56 [.      40      95 ..      40      96 .. 0.93
   2 !   15.7   1.7   1.8e-05     0.016       3      63 ..      76     136 ..      74     141 .. 0.88
   3 ?    0.6   0.2      0.93   8.3e+02      16      36 ..     223     241 ..     217     250 .. 0.64
   4 !   24.6   2.3   2.9e-08   2.6e-05       2      64 ..     255     319 ..     254     323 .. 0.88
   5 !   13.9   1.1   6.5e-05     0.058       2      44 ..     293     335 ..     292     336 .. 0.95
   6 !   11.2   0.2   0.00044      0.39       2      39 ..     327     364 ..     326     366 .. 0.92

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 0.00018
      TPR_19  1 llaegdyaeAlalleqalqedpknaearllLAeallalgqldeAealLdalpeedp 56
                l+++g y +A++++++a    p na  r++ A a l l + ++A   ++a++e++p
  KOO21158.1 40 LYKRGEYSNAVDYYSKAVRLQPTNATYRINRAAAALMLERAEDALSDCQAALESEP 95
                6899****************************************988888888776 PP

  == domain 2  score: 15.7 bits;  conditional E-value: 1.8e-05
      TPR_19   3 aegdyaeAlalleqalqedpknaearllLAeallalgqldeAealLdalpeedpddaryas 63 
                 + ++ ++Al+  ++al+ +p n  a  + A+a + lgql eA++ L+++      da +a+
  KOO21158.1  76 MLERAEDALSDCQAALESEPTNIKAHVRGAKARIMLGQLSEARRHLERAATLPTADATVAT 136
                 5578899****************************************99887777777776 PP

  == domain 3  score: 0.6 bits;  conditional E-value: 0.93
      TPR_19  16 qalqedpknaearllLAeall 36 
                 qal +dp++++ r   ++a+l
  KOO21158.1 223 QALRQDPDHSASRQ--MRAQL 241
                 45555888888877..44433 PP

  == domain 4  score: 24.6 bits;  conditional E-value: 2.9e-08
      TPR_19   2 laegdyaeAlalleqalqedpknaearllL....AeallalgqldeAealLdalpeedpddaryasL 64 
                 + +g+yaeA++ +++al+ dp+na++        A a +++g++++A a +da+++++p    +++L
  KOO21158.1 255 FSAGRYAEAIQKYTEALEIDPENADLNVTFwtnrATARFKNGEYTAAVADCDAALAAAPR--HIKAL 319
                 679***********************99666666*********************99998..55555 PP

  == domain 5  score: 13.9 bits;  conditional E-value: 6.5e-05
      TPR_19   2 laegdyaeAlalleqalqedpknaearllLAeallalgqldeA 44 
                 +++g y++A+a   +al+++p +  a+l+ A + l+l +++ A
  KOO21158.1 293 FKNGEYTAAVADCDAALAAAPRHIKALLRRAACKLELEDYKGA 335
                 589*************************************988 PP

  == domain 6  score: 11.2 bits;  conditional E-value: 0.00044
      TPR_19   2 laegdyaeAlalleqalqedpknaearllLAeallalg 39 
                 l+ +dy  A++ +e+a + +p+++ +r +L +a l+l+
  KOO21158.1 327 LELEDYKGAISDYEEAQAIEPEDQTIRQGLRNAKLELK 364
                 6778**************************99999875 PP

>> TPR_8  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.5   0.0   0.00067       0.6      13      34 .]      42      63 ..      40      63 .. 0.90
   2 ?    0.1   0.1       1.5   1.3e+03      14      34 .]      77      97 ..      64      97 .. 0.81
   3 ?   -1.1   0.0       3.4   3.1e+03      14      29 ..     111     126 ..     105     128 .. 0.75
   4 ?   -1.1   0.0       3.4   3.1e+03      13      26 ..     240     253 ..     239     257 .. 0.78
   5 !   12.2   0.3   0.00019      0.17       8      34 .]     251     277 ..     248     277 .. 0.90
   6 !    8.8   0.0    0.0023       2.1       3      33 ..     284     314 ..     282     315 .. 0.92
   7 !   10.8   0.5   0.00053      0.47       2      34 .]     317     349 ..     316     349 .. 0.91

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00067
                HTT-HHHHHHHHHHHHHHHHH. CS
       TPR_8 13 klgdyeeAkeyyekaleldpdn 34
                k g+y +A+ yy ka++l+p+n
  KOO21158.1 42 KRGEYSNAVDYYSKAVRLQPTN 63
                6799****************86 PP

  == domain 2  score: 0.1 bits;  conditional E-value: 1.5
                TT-HHHHHHHHHHHHHHHHH. CS
       TPR_8 14 lgdyeeAkeyyekaleldpdn 34
                l++ e A + ++ ale +p+n
  KOO21158.1 77 LERAEDALSDCQAALESEPTN 97
                889999**********99975 PP

  == domain 3  score: -1.1 bits;  conditional E-value: 3.4
                 TT-HHHHHHHHHHHHH CS
       TPR_8  14 lgdyeeAkeyyekale 29 
                 lg++ eA   +e+a +
  KOO21158.1 111 LGQLSEARRHLERAAT 126
                 7888888888888865 PP

  == domain 4  score: -1.1 bits;  conditional E-value: 3.4
                 HTT-HHHHHHHHHH CS
       TPR_8  13 klgdyeeAkeyyek 26 
                 +l ++eeAk++ ++
  KOO21158.1 240 QLRQIEEAKKAGNE 253
                 7899*****98555 PP

  == domain 5  score: 12.2 bits;  conditional E-value: 0.00019
                 HHHHHHTT-HHHHHHHHHHHHHHHHH. CS
       TPR_8   8 gsiylklgdyeeAkeyyekaleldpdn 34 
                 g+  ++ g+y eA++ y +ale+dp+n
  KOO21158.1 251 GNEAFSAGRYAEAIQKYTEALEIDPEN 277
                 6777899******************86 PP

  == domain 6  score: 8.8 bits;  conditional E-value: 0.0023
                 HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH CS
       TPR_8   3 ayynlgsiylklgdyeeAkeyyekaleldpd 33 
                  + n + + +k g+y +A++ +  al ++p 
  KOO21158.1 284 FWTNRATARFKNGEYTAAVADCDAALAAAPR 314
                 699***********************99996 PP

  == domain 7  score: 10.8 bits;  conditional E-value: 0.00053
                 CHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH. CS
       TPR_8   2 eayynlgsiylklgdyeeAkeyyekaleldpdn 34 
                 +a+++ + + l+l+dy+ A++ ye+a  ++p++
  KOO21158.1 317 KALLRRAACKLELEDYKGAISDYEEAQAIEPED 349
                 6888999999*******************9985 PP

>> TPR_14  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.1   2.2e-05      0.02       2      42 ..      31      71 ..      30      73 .. 0.92
   2 ?    3.7   0.6      0.15   1.4e+02       8      42 ..      71     105 ..      70     109 .. 0.86
   3 !    9.1   0.8    0.0029       2.6       9      42 ..     106     139 ..     103     141 .. 0.79
   4 ?    0.8   0.0       1.4   1.2e+03      11      37 ..     155     183 ..     148     191 .. 0.75
   5 ?    1.8   0.2      0.62   5.6e+02      26      44 .]     223     241 ..     208     241 .. 0.88
   6 !   11.3   0.1   0.00056       0.5       9      38 ..     252     281 ..     245     287 .. 0.86
   7 !   10.7   1.6   0.00091      0.82       7      43 ..     288     324 ..     282     325 .. 0.90
   8 !    9.5   0.3    0.0021       1.9       2      40 ..     317     355 ..     316     356 .. 0.93
   9 ?    2.8   0.4      0.31   2.8e+02       2      21 ..     694     714 ..     693     720 .. 0.83

  Alignments for each domain:
  == domain 1  score: 15.7 bits;  conditional E-value: 2.2e-05
      TPR_14  2 eallalaeallalGdpdeAiallrralalaPddaeawllla 42
                ea +a++  l+ +G++  A++++ +a++l+P++a++++  a
  KOO21158.1 31 EAAKARGNDLYKRGEYSNAVDYYSKAVRLQPTNATYRINRA 71
                789999*****************************998877 PP

  == domain 2  score: 3.7 bits;  conditional E-value: 0.15
      TPR_14   8 aeallalGdpdeAiallrralalaPddaeawllla 42 
                 a+a l l++ ++A+  +++al+  P++  a+ + a
  KOO21158.1  71 AAAALMLERAEDALSDCQAALESEPTNIKAHVRGA 105
                 77888899999****************99997755 PP

  == domain 3  score: 9.1 bits;  conditional E-value: 0.0029
      TPR_14   9 eallalGdpdeAiallrralalaP.ddaeawllla 42 
                 +a   lG++ eA+++l+ra a+ P +da++ ++la
  KOO21158.1 106 KARIMLGQLSEARRHLERA-ATLPtADATVATELA 139
                 566779*************.556626778888887 PP

  == domain 4  score: 0.8 bits;  conditional E-value: 1.4
      TPR_14  11 llalG..dpdeAiallrralalaPddaea 37 
                 l+++G    +eA++l+  + +++P ++++
  KOO21158.1 155 LEQAGgaAAREALRLFTSLSQRCPCSETV 183
                 55554445789********99**987754 PP

  == domain 5  score: 1.8 bits;  conditional E-value: 0.62
      TPR_14  26 ralalaPddaeawlllaql 44 
                 +al+++Pd+ + + + aql
  KOO21158.1 223 QALRQDPDHSASRQMRAQL 241
                 68899****9999999996 PP

  == domain 6  score: 11.3 bits;  conditional E-value: 0.00056
      TPR_14   9 eallalGdpdeAiallrralalaPddaeaw 38 
                    + +G+++eAi+ + +al+ +P++a+++
  KOO21158.1 252 NEAFSAGRYAEAIQKYTEALEIDPENADLN 281
                 556789********************9865 PP

  == domain 7  score: 10.7 bits;  conditional E-value: 0.00091
      TPR_14   7 laeallalGdpdeAiallrralalaPddaeawlllaq 43 
                 +a a + +G++ +A+a +++ala+aP +  a+l+ a 
  KOO21158.1 288 RATARFKNGEYTAAVADCDAALAAAPRHIKALLRRAA 324
                 7889999*************************99986 PP

  == domain 8  score: 9.5 bits;  conditional E-value: 0.0021
      TPR_14   2 eallalaeallalGdpdeAiallrralalaPddaeawll 40 
                 +all++a+  l+l+d+++Ai  +++a a  P+d++++  
  KOO21158.1 317 KALLRRAACKLELEDYKGAISDYEEAQAIEPEDQTIRQG 355
                 6899*****************************999865 PP

  == domain 9  score: 2.8 bits;  conditional E-value: 0.31
      TPR_14   2 eallalaeal.lalGdpdeAi 21 
                 eal+ la+   +++G+pd+A+
  KOO21158.1 694 EALYSLASTRaRRRGQPDRAR 714
                 78999999852689*****97 PP

>> ANAPC3  Anaphase-promoting complex, cyclosome, subunit 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.0   0.9    0.0001     0.089      22      76 ..      29      84 ..      19      89 .. 0.90
   2 ?    4.0   0.0     0.066        59      48      81 ..      89     123 ..      83     124 .. 0.84
   3 !   18.7   2.1   1.6e-06    0.0015       4      77 ..     259     337 ..     254     342 .. 0.85

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 0.0001
                -HHHHHHHHHHHHHTT-HHHHHHHHHCT.SHHHC-HHHHHHHHHHHHHTT-HHHHH CS
      ANAPC3 22 spedayllAlclylngqykrAyellrka.klnskslgcrylfAqcllkLkkyeeAi 76
                 +e+a + +  ly++g+y  A ++++ka +l++++  +r+  A ++l L++ e+A+
  KOO21158.1 29 AAEAAKARGNDLYKRGEYSNAVDYYSKAvRLQPTNATYRINRAAAALMLERAEDAL 84
                55666666888*******************************************98 PP

  == domain 2  score: 4.0 bits;  conditional E-value: 0.066
                 CT.SHHHC-HHHHHHHHHHHHHTT-HHHHHHHH-S CS
      ANAPC3  48 ka.klnskslgcrylfAqcllkLkkyeeAiaaLek 81 
                  a +++++++++++  A++ + L+++ eA+++Le+
  KOO21158.1  89 AAlESEPTNIKAHVRGAKARIMLGQLSEARRHLER 123
                 5556679999999999*****************97 PP

  == domain 3  score: 18.7 bits;  conditional E-value: 1.6e-06
                 -HHHHHHHHHHHH...HHH--HHHHHHH..HHHHHHTT-HHHHHHHHHCT.SHHHC-HHHHHHHHHHHHHTT-HHHHHH CS
      ANAPC3   4 nyknAiflaerlla..aetespedayll..AlclylngqykrAyellrka.klnskslgcrylfAqcllkLkkyeeAia 77 
                 +y +Ai  +  +l+   e+ +++ +++   A + ++ng+y+ A   ++ a   +++++++++  A c l+L+ y+ Ai+
  KOO21158.1 259 RYAEAIQKYTEALEidPENADLNVTFWTnrATARFKNGEYTAAVADCDAAlAAAPRHIKALLRRAACKLELEDYKGAIS 337
                 666777777777763355666677999889***********************************************97 PP

>> TPR_9  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.7   0.1     0.018        17      29      67 ..      30      68 ..      26      78 .. 0.73
   2 !   11.9   0.5   0.00021      0.19      10      65 ..      45     100 ..      40     109 .. 0.87
   3 ?    4.9   4.7     0.031        28       4      60 ..      73     129 ..      71     170 .. 0.90
   4 ?    1.2   0.8      0.46   4.1e+02      55      73 .]     224     242 ..     221     242 .. 0.91
   5 ?    2.6   0.0      0.17   1.6e+02      41      65 ..     256     280 ..     245     283 .. 0.90
   6 !   24.6   1.5   2.2e-08     2e-05       8      66 ..     295     353 ..     285     356 .. 0.93
   7 ?   -2.7   0.0       7.8     7e+03      52      63 ..     566     577 ..     562     581 .. 0.83

  Alignments for each domain:
  == domain 1  score: 5.7 bits;  conditional E-value: 0.018
       TPR_9 29 peerrdRGlllaqlGclsaAladLeaylalapdapdaea 67
                +e    RG  l+++G +s A++    +++l+p +++ + 
  KOO21158.1 30 AEAAKARGNDLYKRGEYSNAVDYYSKAVRLQPTNATYRI 68
                56666788889*********************5544333 PP

  == domain 2  score: 11.9 bits;  conditional E-value: 0.00021
       TPR_9  10 dweralavverllllaPddpeerrdRGlllaqlGclsaAladLeaylalapdapda 65 
                 +++ a  ++   + l+P  +  r  R+ +   l++ + Al d +a+l+ +p +  a
  KOO21158.1  45 EYSNAVDYYSKAVRLQPTNATYRINRAAAALMLERAEDALSDCQAALESEPTNIKA 100
                 677899999999***************************************65554 PP

  == domain 3  score: 4.9 bits;  conditional E-value: 0.031
       TPR_9   4 iaireedweralavverllllaPddpeerrdRGlllaqlGclsaAladLeaylalap 60 
                 +a+  e++e al  ++  l   P  +  +   + ++  lG+ls+A++ Le+++ l  
  KOO21158.1  73 AALMLERAEDALSDCQAALESEPTNIKAHVRGAKARIMLGQLSEARRHLERAATLPT 129
                 56677999*******************************************986544 PP

  == domain 4  score: 1.2 bits;  conditional E-value: 0.46
       TPR_9  55 ylalapdapdaeairaqLn 73 
                 +l+++pd  + +++raqL+
  KOO21158.1 224 ALRQDPDHSASRQMRAQLR 242
                 689**************96 PP

  == domain 5  score: 2.6 bits;  conditional E-value: 0.17
       TPR_9  41 qlGclsaAladLeaylalapdapda 65 
                   G++++A++    +l+++p+++d 
  KOO21158.1 256 SAGRYAEAIQKYTEALEIDPENADL 280
                 579*****************99986 PP

  == domain 6  score: 24.6 bits;  conditional E-value: 2.2e-08
       TPR_9   8 eedweralavverllllaPddpeerrdRGlllaqlGclsaAladLeaylalapdapdae 66 
                 + ++ +a a ++  l+ aP+++  ++ R+ +  +l+++++A+ d e + a++p++++++
  KOO21158.1 295 NGEYTAAVADCDAALAAAPRHIKALLRRAACKLELEDYKGAISDYEEAQAIEPEDQTIR 353
                 667889**************************************************987 PP

  == domain 7  score: -2.7 bits;  conditional E-value: 7.8
       TPR_9  52 Leaylalapdap 63 
                 +e+++al+p+a+
  KOO21158.1 566 FERFVALNPNAQ 577
                 789999999876 PP

>> TPR_12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.8   5.1   6.1e-05     0.055       2      66 ..      29      92 ..      28      94 .. 0.86
   2 !    6.9   5.4    0.0082       7.4       6      72 ..      66     125 ..      62     129 .. 0.79
   3 !    9.7   0.2    0.0011      0.99      56      76 ..     255     275 ..     247     276 .. 0.77
   4 !   19.0   1.0   1.5e-06    0.0013       6      74 ..     285     345 ..     280     347 .. 0.94
   5 ?   -0.6   0.1       1.8   1.6e+03      46      65 ..     694     714 ..     681     715 .. 0.77

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 6.1e-05
      TPR_12  2 vatalnnlaavlrrlgrydeAlellekaleia.rrllGpdhpltattlrnLgrlyralgryeeAle 66
                +a a+  +++ l+++g+y  A +++ ka++++ +++  +++ + a++   L r+ +al + ++Ale
  KOO21158.1 29 AAEAAKARGNDLYKRGEYSNAVDYYSKAVRLQpTNA--TYRINRAAAALMLERAEDALSDCQAALE 92
                56777789************************6666..8888889999888888888888888886 PP

  == domain 2  score: 6.9 bits;  conditional E-value: 0.0082
      TPR_12   6 ln.nlaavlrrlgrydeAlellekaleiarrllGpdhpltattlrnLgrlyralgryeeAlelleeal 72 
                 ++ n+aa+ + l+r ++Al+ +++ale       p++   a ++ + +r+  +lg++ eA+++le+a 
  KOO21158.1  66 YRiNRAAAALMLERAEDALSDCQAALESE-----PTN-IKAHVRGAKARI--MLGQLSEARRHLERAA 125
                 44599********************9999.....766.677777777777..6777888888888875 PP

  == domain 3  score: 9.7 bits;  conditional E-value: 0.0011
      TPR_12  56 ralgryeeAlelleealaiae 76 
                 + +gry+eA++ ++eal+i++
  KOO21158.1 255 FSAGRYAEAIQKYTEALEIDP 275
                 567899999999999998875 PP

  == domain 4  score: 19.0 bits;  conditional E-value: 1.5e-06
      TPR_12   6 lnnlaavlrrlgrydeAlellekaleiarrllGpdhpltattlrnLgrlyralgryeeAlelleealai 74 
                 ++n+a++ ++ g+y+ A + +++al++a     p h   + +l   + + ++l++y+ A++ +eea ai
  KOO21158.1 285 WTNRATARFKNGEYTAAVADCDAALAAA-----PRH---IKALLRRAACKLELEDYKGAISDYEEAQAI 345
                 669*************************.....*99...899***********************9776 PP

  == domain 5  score: -0.6 bits;  conditional E-value: 1.8
      TPR_12  46 ttlrnLgrl.yralgryeeAl 65 
                 ++l+ L+ +  r++g+++ A+
  KOO21158.1 694 EALYSLASTrARRRGQPDRAR 714
                 678888888447888888885 PP

>> TPR_7  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.0   0.0    0.0036       3.2      11      35 ..      42      64 ..      36      65 .. 0.87
   2 ?   -2.3   0.0       7.1   6.3e+03      16      34 ..      81      97 ..      77      99 .. 0.79
   3 ?   -1.6   0.0       4.1   3.7e+03      12      29 ..     111     126 ..     107     133 .. 0.66
   4 !   10.4   0.1    0.0006      0.54      11      33 ..     256     276 ..     254     281 .. 0.76
   5 ?    2.5   0.0       0.2   1.8e+02       4      32 ..     287     313 ..     285     317 .. 0.80
   6 ?    5.4   0.2     0.024        21       2      34 ..     319     349 ..     318     352 .. 0.75
   7 ?   -0.4   0.1       1.7   1.5e+03       1      18 [.     695     713 ..     695     714 .. 0.82

  Alignments for each domain:
  == domain 1  score: 8.0 bits;  conditional E-value: 0.0036
       TPR_7 11 rlGdyeeAielyeqsLaltkdpeda 35
                ++G+y++A+++y +  a++ +p++a
  KOO21158.1 42 KRGEYSNAVDYYSK--AVRLQPTNA 64
                56************..999999876 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 7.1
       TPR_7 16 eeAielyeqsLaltkdped 34
                e+A++ +++  al+++p++
  KOO21158.1 81 EDALSDCQA--ALESEPTN 97
                789999999..99888876 PP

  == domain 3  score: -1.6 bits;  conditional E-value: 4.1
       TPR_7  12 lGdyeeAielyeqsLalt 29 
                 lG+ +eA +++e+  a t
  KOO21158.1 111 LGQLSEARRHLER--AAT 126
                 5666777777777..433 PP

  == domain 4  score: 10.4 bits;  conditional E-value: 0.0006
       TPR_7  11 rlGdyeeAielyeqsLaltkdpe 33 
                 + G+y+eAi+ y+++L+++  pe
  KOO21158.1 256 SAGRYAEAIQKYTEALEID--PE 276
                 67************55555..44 PP

  == domain 5  score: 2.5 bits;  conditional E-value: 0.2
       TPR_7   4 nLarlysrlGdyeeAielyeqsLaltkdp 32 
                 n a ++++ G+y  A+  + +  al+ +p
  KOO21158.1 287 NRATARFKNGEYTAAVADCDA--ALAAAP 313
                 7789999*************9..555554 PP

  == domain 6  score: 5.4 bits;  conditional E-value: 0.024
       TPR_7   2 LlnLarlysrlGdyeeAielyeqsLaltkdped 34 
                 Ll+ a +  +l dy+ Ai+ ye+  a + +ped
  KOO21158.1 319 LLRRAACKLELEDYKGAISDYEE--AQAIEPED 349
                 56666666779************..76666655 PP

  == domain 7  score: -0.4 bits;  conditional E-value: 1.7
       TPR_7   1 aLlnLarlysr.lGdyeeA 18 
                 aL+ La+++ r +G+ ++A
  KOO21158.1 695 ALYSLASTRARrRGQPDRA 713
                 7999****66659999988 PP

>> Fis1_TPR_C  Fis1 C-terminal tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.0   0.2    0.0032       2.9      12      34 ..      41      63 ..      40      67 .. 0.94
   2 ?    2.1   0.1      0.22     2e+02      18      35 ..      81      98 ..      70     101 .. 0.83
   3 ?   -2.4   0.0       5.7   5.1e+03      13      26 ..     110     123 ..     105     124 .. 0.79
   4 ?    4.6   0.0     0.039        35      15      35 ..     258     278 ..     255     281 .. 0.91
   5 !    7.5   0.2    0.0049       4.4       8      33 ..     289     314 ..     287     325 .. 0.89

  Alignments for each domain:
  == domain 1  score: 8.0 bits;  conditional E-value: 0.0032
                HHHT-HHHHHHHHHHHHHHTTS- CS
  Fis1_TPR_C 12 yklgeYseArryvdalLeiEPen 34
                yk geYs+A  y     +++P n
  KOO21158.1 41 YKRGEYSNAVDYYSKAVRLQPTN 63
                9********************99 PP

  == domain 2  score: 2.1 bits;  conditional E-value: 0.22
                HHHHHHHHHHHHHTTS-H CS
  Fis1_TPR_C 18 seArryvdalLeiEPenr 35
                ++A+  ++a Le EP n 
  KOO21158.1 81 EDALSDCQAALESEPTNI 98
                689999**********96 PP

  == domain 3  score: -2.4 bits;  conditional E-value: 5.7
                 HHT-HHHHHHHHHH CS
  Fis1_TPR_C  13 klgeYseArryvda 26 
                  lg+ seArr +++
  KOO21158.1 110 MLGQLSEARRHLER 123
                 5899******8875 PP

  == domain 4  score: 4.6 bits;  conditional E-value: 0.039
                 T-HHHHHHHHHHHHHHTTS-H CS
  Fis1_TPR_C  15 geYseArryvdalLeiEPenr 35 
                 g+Y eA +     Lei+Pen 
  KOO21158.1 258 GRYAEAIQKYTEALEIDPENA 278
                 89*****************96 PP

  == domain 5  score: 7.5 bits;  conditional E-value: 0.0049
                 HHHHHHHT-HHHHHHHHHHHHHHTTS CS
  Fis1_TPR_C   8 AlGhyklgeYseArryvdalLeiEPe 33 
                 A + +k geY+ A   +da L+  P+
  KOO21158.1 289 ATARFKNGEYTAAVADCDAALAAAPR 314
                 8899*****************99997 PP

>> RPT  A repeated domain in UCH-protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.2   0.2       0.8   7.2e+02      29      50 ..     228     249 ..     222     250 .. 0.81
   2 ?   10.7   0.0   0.00043      0.38       6      30 ..     372     396 ..     369     418 .. 0.77

  Alignments for each domain:
  == domain 1  score: 0.2 bits;  conditional E-value: 0.8
         RPT  29 eddpsqkdklrrALkvIAeeRk 50 
                 ++d s  +++r++L+ I e++k
  KOO21158.1 228 DPDHSASRQMRAQLRQIEEAKK 249
                 44668899*********99987 PP

  == domain 2  score: 10.7 bits;  conditional E-value: 0.00043
         RPT   6 yklLgidentdDdviitayqvkled 30 
                 yk+Lgi++n++D +i +ay+ k  +
  KOO21158.1 372 YKVLGITKNATDHEIKKAYKKKALE 396
                 9*******************99844 PP

>> MIT  MIT (microtubule interacting and transport) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.5   0.3      0.02        18      17      33 ..      43      59 ..      39      82 .. 0.69
   2 ?   10.2   1.1   0.00066      0.59       8      32 ..     247     272 ..     244     273 .. 0.78
   3 ?    1.6   0.2      0.32   2.9e+02       7      30 ..     319     342 ..     317     360 .. 0.87

  Alignments for each domain:
  == domain 1  score: 5.5 bits;  conditional E-value: 0.02
         MIT 17 agnyeeAlelYkealel 33
                +g+y+ A+++Y++a++l
  KOO21158.1 43 RGEYSNAVDYYSKAVRL 59
                56777777777777654 PP

  == domain 2  score: 10.2 bits;  conditional E-value: 0.00066
         MIT   8 vkkA.veeDnagnyeeAlelYkeale 32 
                 +kkA  e+ +ag y+eA+++Y+eale
  KOO21158.1 247 AKKAgNEAFSAGRYAEAIQKYTEALE 272
                 56665555589*************98 PP

  == domain 3  score: 1.6 bits;  conditional E-value: 0.32
         MIT   7 lvkkAveeDnagnyeeAlelYkea 30 
                 l+++A+ + + ++y+ A++ Y+ea
  KOO21158.1 319 LLRRAACKLELEDYKGAISDYEEA 342
                 677888888899**********98 PP

>> Sulfotransfer_2  Sulfotransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0    0.0003      0.26      79     192 ..     536     637 ..     419     645 .. 0.68

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.0003
  Sulfotransfer_2  79 yfkfilvRdPfeRllSayrnkcvgdkergatwkgrlivckgrlpacyegddwsgvsfeeFleclsnlapersrnnrhwap..acdlctpclady 170
                       +  ++vR+P++ ++S+y++  +     ++ w++ +    +  p+++++      ++    +++s++  ++    rh  p    +  ++++a  
       KOO21158.1 536 VTVAMVVREPWSFFVSWYYYIGA----ARCGWCTFERFVALN-PNAQSH-----LTLGGAPRIYSDKLRAQ--HARH-DPvlLARV-HTIVAGI 615
                      556799**************886....569997544444444.555555.....56666666555555222..2345.55422224.48999** PP

  Sulfotransfer_2 171 dlvgkyetleedrnailrllal 192
                      d++g++e+l+e + ++++ ++l
       KOO21158.1 616 DVIGVTERLDEFMLELCDAAGL 637
                      ***********99999998887 PP

>> SRP_TPR_like  Putative TPR-like repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.3   0.0     0.021        18       5      72 ..      53     125 ..      47     136 .. 0.74
   2 ?    3.9   0.1     0.059        53      27      66 ..     264     303 ..     242     354 .. 0.79

  Alignments for each domain:
  == domain 1  score: 5.3 bits;  conditional E-value: 0.021
  SRP_TPR_like   5 yekilrle..gkelkkfkvvaliklekyeeaLkllkkgs...alsedvrfEkaYvlYklkkykkalkilkkve 72 
                   y k +rl+  ++++   ++ a + le+ e+aL+ ++ +     ++ + ++  a +   l ++ +a + l+++ 
    KOO21158.1  53 YSKAVRLQptNATYRINRAAAALMLERAEDALSDCQAALesePTNIKAHVRGAKARIMLGQLSEARRHLERAA 125
                   555555542256677779**************98876543335666777777888888999999999988876 PP

  == domain 2  score: 3.9 bits;  conditional E-value: 0.059
  SRP_TPR_like  27 lekyeeaLkllkkgsalsedvrfEkaYvlYklkkykkalk 66 
                   ++ky+eaL++  ++  l+      +a + +k  +y++a+ 
    KOO21158.1 264 IQKYTEALEIDPENADLNVTFWTNRATARFKNGEYTAAVA 303
                   689*******999999*******************99975 PP

>> TPR_6  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.0   0.2     0.023        21      10      32 ..      40      62 ..      29      63 .. 0.84
   2 ?    3.9   0.1      0.11        97       2      26 ..     100     124 ..      99     127 .. 0.86
   3 ?   -0.4   0.0       2.6   2.3e+03      10      29 ..     155     176 ..     145     178 .. 0.62
   4 ?    3.9   0.2      0.11     1e+02      11      32 ..     255     276 ..     235     277 .. 0.73
   5 ?    0.1   0.1       1.8   1.6e+03       6      25 ..     288     307 ..     287     315 .. 0.76
   6 ?    5.7   0.2     0.029        26       2      28 ..     318     344 ..     317     349 .. 0.86
   7 ?    2.5   0.1       0.3   2.7e+02       1      20 [.     694     714 ..     694     716 .. 0.92

  Alignments for each domain:
  == domain 1  score: 6.0 bits;  conditional E-value: 0.023
                HHHHHHHHHHHHHHHHHHHH-TT CS
       TPR_6 10 yrklgdtdkAlealerlikeYPd 32
                ++k g++++A++++ + ++  P+
  KOO21158.1 40 LYKRGEYSNAVDYYSKAVRLQPT 62
                35556*************99986 PP

  == domain 2  score: 3.9 bits;  conditional E-value: 0.11
                 HHHHHHHHHHHHHHHHHHHHHHHHH CS
       TPR_6   2 AlyklalsyrklgdtdkAlealerl 26 
                 A  + a+++++lg+ ++A++ ler 
  KOO21158.1 100 AHVRGAKARIMLGQLSEARRHLERA 124
                 56677999***99*********997 PP

  == domain 3  score: -0.4 bits;  conditional E-value: 2.6
                 HHH.HH.HHHHHHHHHHHHHHH CS
       TPR_6  10 yrk.lg.dtdkAlealerlike 29 
                 +++ +g  +++Al+++ +l ++
  KOO21158.1 155 LEQaGGaAAREALRLFTSLSQR 176
                 5543443556888888888776 PP

  == domain 4  score: 3.9 bits;  conditional E-value: 0.11
                 HHHHHHHHHHHHHHHHHHH-TT CS
       TPR_6  11 rklgdtdkAlealerlikeYPd 32 
                 +++g++++A++ + + ++  P+
  KOO21158.1 255 FSAGRYAEAIQKYTEALEIDPE 276
                 3348***********9999886 PP

  == domain 5  score: 0.1 bits;  conditional E-value: 1.8
                 HHHHHHHHHHHHHHHHHHHH CS
       TPR_6   6 lalsyrklgdtdkAlealer 25 
                 +a +++k g++++A++  + 
  KOO21158.1 288 RATARFKNGEYTAAVADCDA 307
                 7999***99*****986555 PP

  == domain 6  score: 5.7 bits;  conditional E-value: 0.029
                 HHHHHHHHHHHHHHHHHHHHHHHHHHH CS
       TPR_6   2 AlyklalsyrklgdtdkAlealerlik 28 
                 Al+++a + ++l d+  A+  +e+   
  KOO21158.1 318 ALLRRAACKLELEDYKGAISDYEEAQA 344
                 9**********88*******9998765 PP

  == domain 7  score: 2.5 bits;  conditional E-value: 0.3
                 HHHHHHHHHHHH.HHHHHHHH CS
       TPR_6   1 dAlyklalsyrk.lgdtdkAl 20 
                 +Aly la  + +  g++d+A+
  KOO21158.1 694 EALYSLASTRARrRGQPDRAR 714
                 79*********9889****97 PP

>> BTAD  Bacterial transcriptional activator domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.0   6.3     0.002       1.8      21     122 ..      25     124 ..      15     138 .. 0.83
   2 ?    6.3   1.4     0.014        12      77     143 ..     162     227 ..     134     228 .. 0.82
   3 ?    9.8   3.6    0.0011      0.99       4      94 ..     242     332 ..     239     360 .. 0.87
   4 ?   -0.1   0.4       1.3   1.2e+03      27      64 ..     682     722 ..     661     727 .. 0.74
   5 ?    2.0   0.5      0.28   2.5e+02      21      56 ..     825     862 ..     812     867 .. 0.81

  Alignments for each domain:
  == domain 1  score: 9.0 bits;  conditional E-value: 0.002
                 -HHHHHHHHHH.HHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHH CS
        BTAD  21 dpeeaaellea.AlalwrGpaladleagewleaererleelrlealealaeaelrlGraeealaelealvaehPlrErlhrqlmrAlarsGrqaeALev 118
                 dp+eaae+++a + +l++   ++++ +     ++++rl+    +    +a+a l l+rae+al++ +a+++ +P++ ++h    +A   +G+ +eA + 
  KOO21158.1  25 DPAEAAEAAKArGNDLYKRGEYSNAVD---YYSKAVRLQPTNATYRINRAAAALMLERAEDALSDCQAALESEPTNIKAHVRGAKARIMLGQLSEARRH 120
                 666666655432677777766777565...67889999999999999*********************************************9999877 PP

                 HHHH CS
        BTAD 119 Yerl 122
                  er+
  KOO21158.1 121 LERA 124
                 7665 PP

  == domain 2  score: 6.3 bits;  conditional E-value: 0.014
                 -HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHHHHHH CS
        BTAD  77 raeealaelealvaehPlrErlhrqlmrAlarsGrqaeALevYerlrrlLaeeLgvepgpelralhe 143
                  a+eal+  ++l + +P  E+  ++ m+Al+r    +   +v  +  r L++     pgp+l+al++
  KOO21158.1 162 AAREALRLFTSLSQRCPCSETVACLQMEALMRARPDQGPQQVVAESARWLRKS-ADNPGPALQALRQ 227
                 6789***************************9988888888888888888887.5578888888876 PP

  == domain 3  score: 9.8 bits;  conditional E-value: 0.0011
                 HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT..-HHHHHHHHHHHHHHSTT CS
        BTAD   4 arfealvaagraalaagdpeeaaelleaAlalwrGpaladleagewleaererleelrlealealaeaelrlG..raeealaelealvaehPl 94 
                 +++e++++ag++a +ag+ +ea++++ +Al++  +p  adl+   w + + +r+++   +a  a ++a l+ +  +++++l+++++ ++++++
  KOO21158.1 242 RQIEEAKKAGNEAFSAGRYAEAIQKYTEALEI--DPENADLNVTFWTNRATARFKNGEYTAAVADCDAALAAAprHIKALLRRAACKLELEDY 332
                 678999*************************8..89999999999999999999999999999999988888875556888888887777765 PP

  == domain 4  score: -0.1 bits;  conditional E-value: 1.3
                 HHHHHHHTT--SSTTGGGTT...STTHHHHHHHHHHHHHHH CS
        BTAD  27 elleaAlalwrGpaladlea...gewleaererleelrlea 64 
                  +   A+a w ++al  l +   +++ ++ r+rle+ r++ 
  KOO21158.1 682 HRRAVAVAGWLDEALYSLAStraRRRGQPDRARLEAWRMQP 722
                 44445888899998888777666899999999999999975 PP

  == domain 5  score: 2.0 bits;  conditional E-value: 0.28
                 -HHHHHHHHHHHHTT--SSTTGGGTT..STTHHHHHHH CS
        BTAD  21 dpeeaaelleaAlalwrGpaladlea..gewleaerer 56 
                 + + +++ ++aAla   ++a  dl+a  ++wl +er++
  KOO21158.1 825 REQLRCADVRAALAGVGARATRDLPAvlRPWLLPERAQ 862
                 567889999*****************99******9987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (911 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       602  (0.0335769); expected 358.6 (0.02)
Passed bias filter:                      394  (0.0219756); expected 358.6 (0.02)
Passed Vit filter:                        55  (0.00306766); expected 17.9 (0.001)
Passed Fwd filter:                        23  (0.00128284); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              20  [number of targets reported over threshold]
# CPU time: 0.74u 0.29s 00:00:01.03 Elapsed: 00:00:00.50
# Mc/sec: 5484.86
//
Query:       KOO21159.1  [L=352]
Description: calcyphosin isoform 2 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      1e-25   87.3   7.5    1.7e-05   24.0   0.1    5.3  5  EF-hand_1  EF hand
    2.2e-24   83.3   8.6    6.7e-06   25.6   0.3    5.2  5  EF-hand_6  EF-hand domain
    7.5e-19   68.0   8.8    1.7e-08   34.8   0.2    4.2  5  EF-hand_7  EF-hand domain pair
    3.7e-17   61.0  11.1     0.0009   18.6   0.2    5.1  5  EF-hand_5  EF hand
    1.1e-11   44.3  13.2    0.00048   19.9   0.3    5.1  5  EF-hand_8  EF-hand domain pair
  ------ inclusion threshold ------
      0.035   14.4   0.0         11    6.4   0.0    3.8  4  EF-hand_9  EF-hand domain
       0.58   10.1   1.6          3    7.7   0.1    2.6  3  Caleosin   Caleosin related protein
       0.62   10.0   3.9         12    6.0   0.0    3.7  5  EF-hand_4  Cytoskeletal-regulatory complex EF hand


Domain annotation for each model (and alignments):
>> EF-hand_1  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.8   0.0     0.023        51      14      28 ..      96     110 ..      95     111 .. 0.84
   2 !   21.0   0.1   7.1e-08   0.00016       3      28 ..     159     184 ..     157     185 .. 0.90
   3 !   20.2   0.0   1.2e-07   0.00028       4      24 ..     196     216 ..     193     220 .. 0.88
   4 !   24.0   0.1   7.7e-09   1.7e-05       3      28 ..     277     302 ..     275     303 .. 0.90
   5 !   19.0   0.1   3.1e-07    0.0007       1      23 [.     311     333 ..     311     338 .. 0.89

  Alignments for each domain:
  == domain 1  score: 3.8 bits;  conditional E-value: 0.023
                 SSEEEHHHHHHHHHH CS
   EF-hand_1  14 dGkIdfeEfkellkk 28 
                 d +++f+Ef +l+++
  KOO21159.1  96 DSTLSFDEFTALVAT 110
                 5689******99876 PP

  == domain 2  score: 21.0 bits;  conditional E-value: 7.1e-08
                 HHHHHHHTTTSSSEEEHHHHHHHHHH CS
   EF-hand_1   3 keiFrefDkDgdGkIdfeEfkellkk 28 
                  ++Fr+ D Dg+G +d +Ef ++l+ 
  KOO21159.1 159 IDLFRKWDDDGSGSVDADEFGRALSQ 184
                 589*******************9976 PP

  == domain 3  score: 20.2 bits;  conditional E-value: 1.2e-07
                 HHHHHHTTTSSSEEEHHHHHH CS
   EF-hand_1   4 eiFrefDkDgdGkIdfeEfke 24 
                  iF+++D+Dg+G++d++E+ +
  KOO21159.1 196 FIFEHLDVDGSGTVDYNELNS 216
                 59****************965 PP

  == domain 4  score: 24.0 bits;  conditional E-value: 7.7e-09
                 HHHHHHHTTTSSSEEEHHHHHHHHHH CS
   EF-hand_1   3 keiFrefDkDgdGkIdfeEfkellkk 28 
                  + Fr+ D+DgdG I+ eEf +++++
  KOO21159.1 277 LDTFRMWDVDGDGAISCEEFADAFAA 302
                 678*******************9986 PP

  == domain 5  score: 19.0 bits;  conditional E-value: 3.1e-07
                 HHHHHHHHHTTTSSSEEEHHHHH CS
   EF-hand_1   1 elkeiFrefDkDgdGkIdfeEfk 23 
                 +l+ +F+ fD+Dg+G++d+ E+ 
  KOO21159.1 311 DLDAVFDRFDQDGSGRVDYLEMS 333
                 6899***************9975 PP

>> EF-hand_6  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.4   0.0      0.67   1.5e+03      14      25 ..      96     107 ..      93     112 .. 0.82
   2 !   25.6   0.3     3e-09   6.7e-06       2      31 .]     158     186 ..     157     189 .. 0.90
   3 !   18.0   0.0   8.5e-07    0.0019       5      27 ..     197     219 ..     195     228 .. 0.90
   4 !   21.8   0.1   5.2e-08   0.00012       2      31 .]     276     304 ..     275     304 .. 0.91
   5 !   18.4   0.1   6.1e-07    0.0014       2      26 ..     312     336 ..     311     339 .. 0.88

  Alignments for each domain:
  == domain 1  score: -0.4 bits;  conditional E-value: 0.67
   EF-hand_6  14 dGkidaeElrka 25 
                 d +++++E+ ++
  KOO21159.1  96 DSTLSFDEFTAL 107
                 789*****9876 PP

  == domain 2  score: 25.6 bits;  conditional E-value: 3e-09
   EF-hand_6   2 lreaFklfDkdgdGkidaeElrkalrkalg 31 
                 + ++F+++D dg+G++da+E+ +al+  lg
  KOO21159.1 158 VIDLFRKWDDDGSGSVDADEFGRALS-QLG 186
                 5799*********************9.455 PP

  == domain 3  score: 18.0 bits;  conditional E-value: 8.5e-07
   EF-hand_6   5 aFklfDkdgdGkidaeElrkalr 27 
                 +F+++D+dg+G++d++El + lr
  KOO21159.1 197 IFEHLDVDGSGTVDYNELNSRLR 219
                 7*****************87666 PP

  == domain 4  score: 21.8 bits;  conditional E-value: 5.2e-08
   EF-hand_6   2 lreaFklfDkdgdGkidaeElrkalrkalg 31 
                 + + F+++D+dgdG i+ eE+ +a+  alg
  KOO21159.1 276 ILDTFRMWDVDGDGAISCEEFADAFA-ALG 304
                 6789********************98.776 PP

  == domain 5  score: 18.4 bits;  conditional E-value: 6.1e-07
   EF-hand_6   2 lreaFklfDkdgdGkidaeElrkal 26 
                 l+++F+ fD+dg+G +d+ E+ + l
  KOO21159.1 312 LDAVFDRFDQDGSGRVDYLEMSAQL 336
                 789*****************98776 PP

>> EF-hand_7  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.4   0.0       0.2   4.5e+02      58      70 ..      96     108 ..      92     109 .. 0.85
   2 !   14.6   0.2   1.5e-05     0.034       3      66 ..     121     178 ..     119     183 .. 0.77
   3 !   27.9   0.3     1e-09   2.3e-06       6      67 ..     160     215 ..     155     219 .. 0.92
   4 !   15.6   0.0   7.4e-06     0.017       5      47 ..     195     266 ..     191     271 .. 0.65
   5 !   34.8   0.2   7.7e-12   1.7e-08       4      67 ..     276     333 ..     273     336 .. 0.92

  Alignments for each domain:
  == domain 1  score: 1.4 bits;  conditional E-value: 0.2
   EF-hand_7  58 dGvisfdEFlkly 70 
                 d ++sfdEF +l+
  KOO21159.1  96 DSTLSFDEFTALV 108
                 789******9875 PP

  == domain 2  score: 14.6 bits;  conditional E-value: 1.5e-05
   EF-hand_7   3 klkeaFkelDtdgdgyldkeellrllrkifqgagegsklsdee..lellfkefDtdkdGvisfdEF 66 
                 +l ++F+el    dg++  ++++  l        e+ +  +++  + +lf+++D d++G+++ dEF
  KOO21159.1 121 DLSRRFDELKPSADGRVFAQDVRLTLL------WEALS--RKAgrVIDLFRKWDDDGSGSVDADEF 178
                 577889999999999999999884343......44444..4443499******************* PP

  == domain 3  score: 27.9 bits;  conditional E-value: 1e-09
   EF-hand_7   6 eaFkelDtdgdgyldkeellrllrkifqgagegsklsdeelellfkefDtdkdGvisfdEFl 67 
                 + F++ D dg+g++d +e+ r+l         g+++s+     +f+ +D d++G+++++E+ 
  KOO21159.1 160 DLFRKWDDDGSGSVDADEFGRALS------QLGFVFSSRDTAFIFEHLDVDGSGTVDYNELN 215
                 68**********************......889999998999******************86 PP

  == domain 4  score: 15.6 bits;  conditional E-value: 7.4e-06
   EF-hand_7   5 keaFkelDtdgdgyldkeellr......llrkifqga.......................gegsklsdeele 47 
                   +F+ lD+dg+g +d++el +      + r+++                          ++g ++ +e+++
  KOO21159.1 195 AFIFEHLDVDGSGTVDYNELNSrlrpktMARQLYKLRtdaslkrgaarmnlqggkqtldlSPGAPPVQEQIQ 266
                 578******************988888855555543344444444444445444555555555555555555 PP

  == domain 5  score: 34.8 bits;  conditional E-value: 7.7e-12
   EF-hand_7   4 lkeaFkelDtdgdgyldkeellrllrkifqgagegsklsdeelellfkefDtdkdGvisfdEFl 67 
                 + + F++ D+dgdg ++ ee+ +++         g    +  l+++f+ fD+d++G++++ E+ 
  KOO21159.1 276 ILDTFRMWDVDGDGAISCEEFADAFA------ALGYAAARADLDAVFDRFDQDGSGRVDYLEMS 333
                 6788*********************9......7888888999******************9985 PP

>> EF-hand_5  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.5   0.0      0.46     1e+03      16      25 .]      99     108 ..      98     108 .. 0.83
   2 !   16.7   0.4   1.6e-06    0.0036       2      23 ..     159     180 ..     158     183 .. 0.89
   3 !   12.0   0.0   5.1e-05      0.11       5      22 ..     198     215 ..     195     218 .. 0.88
   4 !   18.6   0.2     4e-07    0.0009       3      22 ..     278     297 ..     276     301 .. 0.90
   5 !   17.1   0.1   1.3e-06    0.0028       1      21 [.     312     332 ..     312     337 .. 0.88

  Alignments for each domain:
  == domain 1  score: -0.5 bits;  conditional E-value: 0.46
                 E-HHHHHHHH CS
   EF-hand_5  16 IskeELktlv 25 
                 +s++E+ +lv
  KOO21159.1  99 LSFDEFTALV 108
                 89****9875 PP

  == domain 2  score: 16.7 bits;  conditional E-value: 1.6e-06
                 HHHHHHH-SS-SSCE-HHHHHH CS
   EF-hand_5   2 kdtFqaiDlNgDGkIskeELkt 23 
                  d+F++ D +g+G ++++E+ +
  KOO21159.1 159 IDLFRKWDDDGSGSVDADEFGR 180
                 589*****************76 PP

  == domain 3  score: 12.0 bits;  conditional E-value: 5.1e-05
                 HHHH-SS-SSCE-HHHHH CS
   EF-hand_5   5 FqaiDlNgDGkIskeELk 22 
                 F+ +D++g+G+++  EL 
  KOO21159.1 198 FEHLDVDGSGTVDYNELN 215
                 7889************96 PP

  == domain 4  score: 18.6 bits;  conditional E-value: 4e-07
                 HHHHHH-SS-SSCE-HHHHH CS
   EF-hand_5   3 dtFqaiDlNgDGkIskeELk 22 
                 dtF++ D++gDG Is eE+ 
  KOO21159.1 278 DTFRMWDVDGDGAISCEEFA 297
                 89****************96 PP

  == domain 5  score: 17.1 bits;  conditional E-value: 1.3e-06
                 HHHHHHHH-SS-SSCE-HHHH CS
   EF-hand_5   1 lkdtFqaiDlNgDGkIskeEL 21 
                 l+++F+++D +g+G+++  E 
  KOO21159.1 312 LDAVFDRFDQDGSGRVDYLEM 332
                 689**************9887 PP

>> EF-hand_8  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.9   0.0      0.19   4.3e+02      40      53 ..      96     109 ..      93     111 .. 0.77
   2 !    9.7   0.3   0.00034      0.75      30      48 ..     160     178 ..     158     179 .. 0.95
   3 !   19.9   0.3   2.1e-07   0.00048       2      48 ..     170     214 ..     169     219 .. 0.94
   4 !   14.0   0.1   1.6e-05     0.035      33      53 ..     281     301 ..     278     303 .. 0.86
   5 !   14.3   0.2   1.3e-05     0.028      19      47 ..     305     331 ..     298     336 .. 0.80

  Alignments for each domain:
  == domain 1  score: 0.9 bits;  conditional E-value: 0.19
   EF-hand_8  40 dGkisfeEFcvlle 53 
                 d ++sf+EF +l++
  KOO21159.1  96 DSTLSFDEFTALVA 109
                 557999**988875 PP

  == domain 2  score: 9.7 bits;  conditional E-value: 0.00034
   EF-hand_8  30 ilfrefDtdgdGkisfeEF 48 
                 +lfr+ D dg+G ++ +EF
  KOO21159.1 160 DLFRKWDDDGSGSVDADEF 178
                 69****************9 PP

  == domain 3  score: 19.9 bits;  conditional E-value: 2.1e-07
   EF-hand_8   2 kgkItreelrrilrilglkkglseeevdilfrefDtdgdGkisfeEF 48 
                 +g+++ +e+ r+l+ lg    +s  +   +f ++D dg+G+++++E 
  KOO21159.1 170 SGSVDADEFGRALSQLGFV--FSSRDTAFIFEHLDVDGSGTVDYNEL 214
                 799**********999***..************************96 PP

  == domain 4  score: 14.0 bits;  conditional E-value: 1.6e-05
   EF-hand_8  33 refDtdgdGkisfeEFcvlle 53 
                 r  D dgdG+is+eEF + ++
  KOO21159.1 281 RMWDVDGDGAISCEEFADAFA 301
                 56699***********99886 PP

  == domain 5  score: 14.3 bits;  conditional E-value: 1.3e-05
   EF-hand_8  19 lkkglseeevdilfrefDtdgdGkisfeE 47 
                 ++      ++d++f++fD+dg+G++++ E
  KOO21159.1 305 YA--AARADLDAVFDRFDQDGSGRVDYLE 331
                 55..555689***************9855 PP

>> EF-hand_9  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.4   0.0      0.18   4.1e+02      37      63 ..     158     183 ..     135     185 .. 0.85
   2 ?    1.2   0.0      0.21   4.7e+02       3      29 ..     197     223 ..     195     237 .. 0.87
   3 ?   -2.7   0.0       3.5   7.8e+03       3      16 ..     279     292 ..     278     299 .. 0.77
   4 ?    6.4   0.0    0.0049        11       1      35 [.     313     346 ..     313     352 .] 0.89

  Alignments for each domain:
  == domain 1  score: 1.4 bits;  conditional E-value: 0.18
   EF-hand_9  37 LeelakelDPdgedasvdldtflrvmr 63 
                 + +l ++ D dg  +svd d f r ++
  KOO21159.1 158 VIDLFRKWDDDGS-GSVDADEFGRALS 183
                 5678899999999.9******988765 PP

  == domain 2  score: 1.2 bits;  conditional E-value: 0.21
   EF-hand_9   3 vFevcDtqktGrVpvsrlidyLravta 29 
                 +Fe  D++  G+V   +l + Lr  t 
  KOO21159.1 197 IFEHLDVDGSGTVDYNELNSRLRPKTM 223
                 79999*********9999999997765 PP

  == domain 3  score: -2.7 bits;  conditional E-value: 3.5
   EF-hand_9   3 vFevcDtqktGrVp 16 
                 +F++ D++  G + 
  KOO21159.1 279 TFRMWDVDGDGAIS 292
                 59999999988876 PP

  == domain 4  score: 6.4 bits;  conditional E-value: 0.0049
   EF-hand_9   1 etvFevcDtqktGrVpvsrlidyLravtaqdpees 35 
                 ++vF+ +D +  GrV   ++ + L a ++ +p+e+
  KOO21159.1 313 DAVFDRFDQDGSGRVDYLEMSAQLHASAE-APPEA 346
                 689*********************99999.88886 PP

>> Caleosin  Caleosin related protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.1      0.58   1.3e+03      13      37 ..     165     189 ..     161     210 .. 0.80
   2 ?    7.7   0.1    0.0013         3      12      40 ..     282     310 ..     277     317 .. 0.87
   3 ?    0.1   0.0      0.29   6.6e+02      93     122 ..     310     339 ..     306     343 .. 0.81

  Alignments for each domain:
  == domain 1  score: -0.8 bits;  conditional E-value: 0.58
    Caleosin  13 fDrdkdGiiypldtyrgfralgfnv 37 
                 +D d  G +   +  r++ +lgf +
  KOO21159.1 165 WDDDGSGSVDADEFGRALSQLGFVF 189
                 9999999999999999999999854 PP

  == domain 2  score: 7.7 bits;  conditional E-value: 0.0013
    Caleosin  12 FfDrdkdGiiypldtyrgfralgfnvlls 40 
                  +D d dG i   +   +f alg+ ++ +
  KOO21159.1 282 MWDVDGDGAISCEEFADAFAALGYAAARA 310
                 6**********************988765 PP

  == domain 3  score: 0.1 bits;  conditional E-value: 0.29
    Caleosin  93 qkfeeifskyakekkdaltlkevlellkgq 122
                 + ++++f++++++ ++ + + e+ + l++ 
  KOO21159.1 310 ADLDAVFDRFDQDGSGRVDYLEMSAQLHAS 339
                 568999999999999999999998877765 PP

>> EF-hand_4  Cytoskeletal-regulatory complex EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.1         1   2.3e+03      56      67 ..      95     106 ..      90     110 .. 0.81
   2 ?   -1.8   0.0       1.3     3e+03      52      68 ..     165     181 ..     141     194 .. 0.77
   3 ?    2.0   0.0     0.086   1.9e+02      46      66 ..     195     215 ..     188     220 .. 0.82
   4 ?    6.0   0.0    0.0052        12      29      66 ..     263     297 ..     254     303 .. 0.79
   5 ?   -1.3   0.0      0.91     2e+03      44      66 ..     311     333 ..     306     337 .. 0.83

  Alignments for each domain:
  == domain 1  score: -1.4 bits;  conditional E-value: 1
   EF-hand_4  56 edgkldfeefci 67 
                 +d +l f+ef+ 
  KOO21159.1  95 DDSTLSFDEFTA 106
                 6899******75 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 1.3
   EF-hand_4  52 adidedgkldfeefcia 68 
                  d d  g++d +ef  a
  KOO21159.1 165 WDDDGSGSVDADEFGRA 181
                 45677789999999655 PP

  == domain 3  score: 2.0 bits;  conditional E-value: 0.086
   EF-hand_4  46 ekiwdladidedgkldfeefc 66 
                 + i++  d+d  g++d++e+ 
  KOO21159.1 195 AFIFEHLDVDGSGTVDYNELN 215
                 5688889***********975 PP

  == domain 4  score: 6.0 bits;  conditional E-value: 0.0052
   EF-hand_4  29 dkvapvlknskleedklekiwdladidedgkldfeefc 66 
                 +++ +++   +l+     ++w   d+d dg +  eef+
  KOO21159.1 263 EQIQAIIMANRLRILDTFRMW---DVDGDGAISCEEFA 297
                 677777777777766666666...89***********7 PP

  == domain 5  score: -1.3 bits;  conditional E-value: 0.91
   EF-hand_4  44 klekiwdladidedgkldfeefc 66 
                  l+ ++d  d d  g++d+ e+ 
  KOO21159.1 311 DLDAVFDRFDQDGSGRVDYLEMS 333
                 68999999999*******98875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (352 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       406  (0.0226449); expected 358.6 (0.02)
Passed bias filter:                      280  (0.0156172); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.49u 0.25s 00:00:00.74 Elapsed: 00:00:00.43
# Mc/sec: 2480.16
//
Query:       KOO21160.1  [L=359]
Description: hypothetical protein Ctob_000093 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    7.2e-12   45.2  12.1    5.9e-08   32.7   0.8    2.3  2  WW              WW domain
     0.0032   17.4   0.0          2    8.4   0.0    2.6  2  Phage_Arf       Accessory recombination function protein
  ------ inclusion threshold ------
      0.019   15.3   0.2        5.2    7.4   0.0    2.5  2  Glyco_hyd_101C  Glycosyl hydrolase 101 beta sandwich domain
        0.1   12.3   0.0       0.31   10.9   0.0    1.9  1  SAP             SAP domain


Domain annotation for each model (and alignments):
>> WW  WW domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.7   0.8   1.3e-11   5.9e-08       4      31 .]     122     148 ..     120     148 .. 0.96
   2 !   17.1   4.7   9.8e-07    0.0044       4      31 .]     318     344 ..     315     344 .. 0.92

  Alignments for each domain:
  == domain 1  score: 32.7 bits;  conditional E-value: 1.3e-11
                 TEEEEE-TTTT-EEEEETTT--EESS-- CS
          WW   4 GWeeqwdpdsGrvYYyNheTgetqWekP 31 
                  W +++ pd Gr+YY+N+ T +t+W+ P
  KOO21160.1 122 SWSMHTAPD-GRKYYHNPITSVTTWDMP 148
                 5********.****************99 PP

  == domain 2  score: 17.1 bits;  conditional E-value: 9.8e-07
                 TEEEEE-TTTT-EEEEETTT--EESS-- CS
          WW   4 GWeeqwdpdsGrvYYyNheTgetqWekP 31 
                  W+  + pd Gr YYyN++T+ t+W+ P
  KOO21160.1 318 TWQRTKAPD-GRDYYYNPRTKMTSWTNP 344
                 599999***.****************99 PP

>> Phage_Arf  Accessory recombination function protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.4   0.0   0.00044         2       9      30 ..       9      30 ..       1      35 [. 0.82
   2 !    6.2   0.0    0.0023        10      22      40 ..     301     320 ..     296     324 .. 0.85

  Alignments for each domain:
  == domain 1  score: 8.4 bits;  conditional E-value: 0.00044
   Phage_Arf  9 EFiALisPEiEEEvEqqinLAA 30
                 +i LisP + E  Eq + L A
  KOO21160.1  9 PYISLISPGLIETAEQRMHLLA 30
                58***************99866 PP

  == domain 2  score: 6.2 bits;  conditional E-value: 0.0023
   Phage_Arf  22 vEqqinLA.AERqnPiitWd 40 
                 vEq   LA A R+ P++tW+
  KOO21160.1 301 VEQVRVLAlAHRNLPPVTWQ 320
                 78877787799********7 PP

>> Glyco_hyd_101C  Glycosyl hydrolase 101 beta sandwich domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.4   0.0    0.0012       5.2      79     105 ..     129     155 ..     116     158 .. 0.80
   2 ?    5.3   0.0    0.0052        23      74      99 ..     320     345 ..     257     352 .. 0.74

  Alignments for each domain:
  == domain 1  score: 7.4 bits;  conditional E-value: 0.0012
                     GG-EEEEEESS-SEEEEE--HHHHT.S CS
  Glyco_hyd_101C  79 deeklYhynpkggtstwkLpekwakks 105
                      + + Y++np  + +tw++p++++++s
      KOO21160.1 129 PDGRKYYHNPITSVTTWDMPDELRARS 155
                     44577999*************988765 PP

  == domain 2  score: 5.3 bits;  conditional E-value: 0.0052
                     -B--GGG-EEEEEESS-SEEEEE--H CS
  Glyco_hyd_101C  74 kkekadeeklYhynpkggtstwkLpe 99 
                     +++ka + + Y+ynp+   + w+ pe
      KOO21160.1 320 QRTKAPDGRDYYYNPRTKMTSWTNPE 345
                     3456667788************9887 PP

>> SAP  SAP domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   6.9e-05      0.31       1      18 [.     276     293 ..     276     295 .. 0.92

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 6.9e-05
                 HTT--HHHHHHHHHHTT- CS
         SAP   1 lskltVaeLKeeLkkrGL 18 
                 +s+++  +L++++++r+ 
  KOO21160.1 276 YSNMSARQLRKFCAARNV 293
                 89**************95 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (359 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1176  (0.0655921); expected 358.6 (0.02)
Passed bias filter:                      451  (0.0251548); expected 358.6 (0.02)
Passed Vit filter:                        53  (0.0029561); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.52u 0.27s 00:00:00.79 Elapsed: 00:00:00.43
# Mc/sec: 2513.17
//
Query:       KOO21161.1  [L=280]
Description: hypothetical protein Ctob_000092 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.014   15.8   0.0      0.043   14.3   0.0    1.8  1  PH        PH domain


Domain annotation for each model (and alignments):
>> PH  PH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   0.0   2.4e-06     0.043      61      97 ..     111     143 ..      47     144 .. 0.83

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 2.4e-06
                 TTSSSSTSEEEEEESTSSSTEEEEEEESSHHHHHHHH CS
          PH  61 tedpkrkfcfelriverngsrtyllqasseeerkeWi 97 
                  + p+ + cf+++++    +r ++l a+s+ee++ W+
  KOO21161.1 111 GPAPDAPGCFQVILD----KRMVFLVADSAEEKQIWV 143
                 568999******999....69***************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (280 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       229  (0.0127726); expected 358.6 (0.02)
Passed bias filter:                      187  (0.01043); expected 358.6 (0.02)
Passed Vit filter:                        10  (0.000557756); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.24s 00:00:00.67 Elapsed: 00:00:00.41
# Mc/sec: 2035.69
//
Query:       KOO21162.1  [L=557]
Description: hypothetical protein Ctob_000099 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.6e-14   54.0   0.0    4.3e-14   52.6   0.0    1.6  1  Bestrophin   Bestrophin, RFP-TM, chloride channel
  ------ inclusion threshold ------
      0.018   15.0   4.2      0.018   15.0   4.2    2.4  2  Ion_trans_2  Ion channel


Domain annotation for each model (and alignments):
>> Bestrophin  Bestrophin, RFP-TM, chloride channel
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.6   0.0   4.8e-18   4.3e-14      11     290 ..     126     463 ..     118     469 .. 0.71

  Alignments for each domain:
  == domain 1  score: 52.6 bits;  conditional E-value: 4.8e-18
  Bestrophin  11 lkllfrwkGsvyklilrelllflllyalvvllyr...leerl......fellsicelipLsfvLgFrvnavydRWweqrkl.......lgwldkaarsl 93 
                 l+ll+  +Gs +++ ++  l+++++++l+ l+     l++ l      f+ +++      +f L+Fr++++y+R+we  ++       +g   ++a+++
  KOO21162.1 126 LRLLMLPQGSAIPQAIPFGLYTAIFTLLIELFVPasvLSN-LmqhpypFQPFAY----ISAFALVFRTQVAYNRFWECATAltlmsgkWGDAFTEAITF 219
                 7899999999999999988888888888888877553333.1234566777777....678****************9998222222244445556666 PP

  Bestrophin  94 arqvrgls......d.eegrlarrtilrylvlllvlffralssr.vrkr...................................fptlehlleagllte 149
                    +++ +         +  l+ r++ ++l+     +++al  + vr+                                    +p+ ++l   g lte
  KOO21162.1 220 DELINT-NkreygeAgAKW-LEVRRRYQMLMARRYSLCHALALQyVRRDdslsnlveapeagrkpsvpmgpgafggmnqpssraDPKWQQLEVLGGLTE 316
                 666666.246554312222.233333333444444445555544155559****************************999998888889999999*** PP

  Bestrophin 150 eeakilenkywvplqWavsllrrlaerlkelakegrikddq.alkeleeelnelraklgsleridwtpiPlvYtqvvtravylyfllallgrqfldsei 247
                 +e + len+  +    ++++++  +   ++++ +g + +d   l + ++ l + +  + +  +i+ +p P  Ytq vt ++yl+ ++            
  KOO21162.1 317 SEIQTLENSADRVGFIFAQIMHI-S---AQRRCDGGLGSDPpVLSRYWQVLGDGSIGMRQARKIEDIPFPWPYTQAVTAMTYLFIVV------------ 399
                 *******7777766623333333.3...33455555555555999*****************************************9............ PP

  Bestrophin 248 dlylPvftllq........................faffffGllkvaeqlenPFGedddDlelnal.i 290
                    +P + l+                          +  ++ l+ v+ +le+P  + ++Dl+ na+ +
  KOO21162.1 400 ---FP-LVLAHfancgadktciapnywvgpflgfiTSTSYVTLDIVSRALEDPCVHPPNDLPGNAMqC 463
                 ...44.44444444444444444444445555544459**************************9953 PP

>> Ion_trans_2  Ion channel
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.0   4.2     2e-06     0.018      23      43 ..      70      90 ..      32     102 .. 0.84
   2 ?   -1.8   0.1      0.35   3.2e+03      48      73 ..     141     166 ..     134     169 .. 0.71

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 2e-06
                 --HHHHHHHHHHHHTTS---- CS
  Ion_trans_2 23 wsfldalYfsfvtltTiGYGd 43
                  s++ ++Yf++vt+ ++GYGd
   KOO21162.1 70 ESYIISIYFATVTIVSVGYGD 90
                 48999***************9 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 0.35
                  -----HHHHHHHHHHHHHHHHHHHHH CS
  Ion_trans_2  48 tdagrlftivyillGlalfalflavl 73 
                   ++g + +i+++l+ l++ a +l++l
   KOO21162.1 141 IPFGLYTAIFTLLIELFVPASVLSNL 166
                  55566677899999999888888876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (557 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       351  (0.0195772); expected 358.6 (0.02)
Passed bias filter:                      279  (0.0155614); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.55u 0.23s 00:00:00.78 Elapsed: 00:00:00.41
# Mc/sec: 4109.39
//
Query:       KOO21163.1  [L=136]
Description: hypothetical protein Ctob_000098 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (136 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       732  (0.0408277); expected 358.6 (0.02)
Passed bias filter:                      492  (0.0274416); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.41u 0.22s 00:00:00.63 Elapsed: 00:00:00.39
# Mc/sec: 1036.61
//
Query:       KOO21164.1  [L=156]
Description: carnitine-acylcarnitine carrier [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    8.1e-09   35.3   3.3       0.36   10.8   0.1    4.0  4  Mito_carr  Mitochondrial carrier protein
  ------ inclusion threshold ------
      0.054   13.3   0.1       0.18   11.6   0.0    1.8  2  BPS        BPS (Between PH and SH2)


Domain annotation for each model (and alignments):
>> Mito_carr  Mitochondrial carrier protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.6   0.0   0.00079       7.1      10      37 ..       7      34 ..       3      37 .. 0.89
   2 !    7.5   0.0   0.00041       3.7      63      92 ..      40      69 ..      37      74 .. 0.91
   3 !    9.1   0.0   0.00013       1.2       4      39 ..      74     109 ..      71     114 .. 0.87
   4 !   10.8   0.1     4e-05      0.36      60      92 ..     116     148 ..     107     151 .. 0.87

  Alignments for each domain:
  == domain 1  score: 6.6 bits;  conditional E-value: 0.00079
                HHHHHHHHHHHHHHHHHHHHHHHHHHCC CS
   Mito_carr 10 laGglagavatlvttPldvvKtrlqtqk 37
                +aG++++++ t++  P++++K++ qt +
  KOO21164.1  7 IAGVVGATARTIIESPIEYAKVKGQTGQ 34
                899*******************999865 PP

  == domain 2  score: 7.5 bits;  conditional E-value: 0.00041
                GGGTTHHHHHHHHHHHHHHHHHHHHHHHHH CS
   Mito_carr 63 glyrGllpnllrvapasalkfvlyetlkrl 92
                  y+G+  ++ r+ p    +f +++++kr 
  KOO21164.1 40 EIYQGAHLQWARTGPMMTFYFCAFDMCKRN 69
                58**************************95 PP

  == domain 3  score: 9.1 bits;  conditional E-value: 0.00013
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCS CS
   Mito_carr   4 svlkellaGglagavatlvttPldvvKtrlqtqkks 39 
                 ++l +++++g++++++  ++ P++++K r q+  +s
  KOO21164.1  74 TALGQFISSGCCALLGFWIVWPFETLKNRAQAGMDS 109
                 67889**************************97665 PP

  == domain 4  score: 10.8 bits;  conditional E-value: 4e-05
                 HHHGGGTTHHHHHHHHHHHHHHHHHHHHHHHHH CS
   Mito_carr  60 GlrglyrGllpnllrvapasalkfvlyetlkrl 92 
                 Gl+glyrG++p  + v+  +++ + + ++  r 
  KOO21164.1 116 GLLGLYRGIGPGSVSVFLRNGAAMIAMQFANRK 148
                 99****************999999888887766 PP

>> BPS  BPS (Between PH and SH2)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   2.1e-05      0.18      17      39 ..      14      37 ..      11      40 .. 0.86
   2 ?   -1.7   0.0      0.31   2.7e+03       7      14 ..     138     145 ..     136     148 .. 0.79

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 2.1e-05
         BPS 17 kgr.vIeNptEalsaaleegqaWR 39
                + r +Ie p E   ++ + gq+WR
  KOO21164.1 14 TARtIIESPIEYAKVKGQTGQTWR 37
                54439******************9 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 0.31
         BPS   7 sLVaMDFS 14 
                 +++aM F+
  KOO21164.1 138 AMIAMQFA 145
                 789**997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (156 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       371  (0.0206927); expected 358.6 (0.02)
Passed bias filter:                      308  (0.0171789); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.39u 0.23s 00:00:00.62 Elapsed: 00:00:00.39
# Mc/sec: 1200.58
//
Query:       KOO21165.1  [L=628]
Description: hypothetical protein Ctob_000109 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.019   15.1   2.0      0.019   15.1   2.0    2.1  2  TcpQ      Toxin co-regulated pilus biosynthesis protein Q


Domain annotation for each model (and alignments):
>> TcpQ  Toxin co-regulated pilus biosynthesis protein Q
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.0       0.5     9e+03       5      18 ..      62      75 ..      61      76 .. 0.85
   2 ?   15.1   2.0     1e-06     0.019       7      58 ..     255     306 ..     252     311 .. 0.92

  Alignments for each domain:
  == domain 1  score: -3.1 bits;  conditional E-value: 0.5
        TcpQ  5 aekGetLretlerW 18
                +++++++r++ler+
  KOO21165.1 62 LKNDKRVRTQLERF 75
                56899******996 PP

  == domain 2  score: 15.1 bits;  conditional E-value: 1e-06
        TcpQ   7 kGetLretlerWakragwtvvWeadedypieadatfsgdfedavsqvleala 58 
                 + +tL +t ++Wa+ra   + W a+     +a+a+ +g++++++ +++++l+
  KOO21165.1 255 QAQTLAATADQWADRAQALLRWSAAARAVTAAAARPDGSMAQVAAEIVHQLS 306
                 669**********************************************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (628 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       880  (0.0490825); expected 358.6 (0.02)
Passed bias filter:                      352  (0.019633); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.61u 0.25s 00:00:00.86 Elapsed: 00:00:00.43
# Mc/sec: 4352.33
//
Query:       KOO21166.1  [L=301]
Description: hypothetical protein Ctob_000108 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.026   14.6   3.1      0.057   13.5   3.1    1.5  1  bZIP_1    bZIP transcription factor
      0.097   12.8   3.5       0.18   11.9   3.5    1.4  1  bZIP_2    Basic region leucine zipper


Domain annotation for each model (and alignments):
>> bZIP_1  bZIP transcription factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   3.1   6.4e-06     0.057       3      30 ..     244     271 ..     242     271 .. 0.91

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 6.4e-06
                 XXXXXXXX--HHHHHHHHHHHHHHHHHH CS
      bZIP_1   3 elKrekrkqkNReaArrsRqRKqaeiee 30 
                 + ++ +r+++N+ a  ++R RK +++++
  KOO21166.1 244 PDRKGRRRESNKKASVKYRARKTMSMQQ 271
                 67999******************99976 PP

>> bZIP_2  Basic region leucine zipper
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   3.5     2e-05      0.18       3      29 ..     245     271 ..     243     272 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 2e-05
                 XXXXXXXXXXXXXXXX-HHHHHHHHHH CS
      bZIP_2   3 deyrerRrkNreAarrsRekkkakeee 29 
                 d + +rR+ N  A+ ++R +k + +++
  KOO21166.1 245 DRKGRRRESNKKASVKYRARKTMSMQQ 271
                 55667777*************999986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (301 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       520  (0.0290033); expected 358.6 (0.02)
Passed bias filter:                      424  (0.0236488); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.46u 0.22s 00:00:00.68 Elapsed: 00:00:00.39
# Mc/sec: 2299.61
//
Query:       KOO21167.1  [L=286]
Description: ion transport protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    2.3e-36  125.3  13.0    2.8e-36  125.0  13.0    1.0  1  Ion_trans    Ion transport protein
  ------ inclusion threshold ------
       0.31    9.7  13.7      0.068   11.8   3.3    2.4  3  PKD_channel  Polycystin cation channel


Domain annotation for each model (and alignments):
>> Ion_trans  Ion transport protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  125.0  13.0   3.1e-40   2.8e-36       2     237 ..       3     258 ..       2     260 .. 0.81

  Alignments for each domain:
  == domain 1  score: 125.0 bits;  conditional E-value: 3.1e-40
                 HHHHHHHHHHHHHHHHHHHCCCSSSS.HHHHC..HHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHCHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
   Ion_trans   2 svfelfilllillncvflaletyfpe.delek..tileilelvftaiftlemllkilalgllikkrYlrdpwnilDflvvlpsllslvlseesllllsv 97 
                 ++  + + ++i+ n v+  le   ++  ++ k  ++++ ++++f+aif++e+l++++++g+   kr++ + wn++Df+++ ++++ l     + + +s 
  KOO21167.1   3 PIVVWSVAVVIVGNFVVNILEKEYDPnPRMLKyePLWDGFDTAFNAIFLVELLWNLYGFGF--GKRFWYSGWNVFDFVITAVGVVLLSG---VSGPISQ 96 
                 5667788899999*****9965555534444467***************************..**********************9965...4688888 PP

                 HHHHGGGGGGHHHCHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCC..............CCSCCSTSSSTTTSSSSSS.... CS
   Ion_trans  98 lrlfrvlrllklisrleglrtlvtalirsvkdllnvlllllvvlfifaligvqlfkgklrek..............necaktwenpnngntnFdn.... 178
                 l+l+r +r+++l++r+++l  +v +l++sv+ + n +++l+++++i+++++v+lf     +               +                 +    
  KOO21167.1  97 LKLLRAFRVFRLFKRIKSLNKIVVSLLGSVPGVANAFVILFIFFCIYSILAVELF-----RDfgingtyqvddlgiG-----------------Ewqpe 173
                 999999999999999999999999*******************************.....22233334444444431.................03333 PP

                 .....................HHHHHHHHHHHHTTSSHHHHHHHHHHHS.....HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
   Ion_trans 179 .....................fftallwlfrlmttegwgdilyatldek.....skvaliyfvifiilgsflllNlliaviadnf 237
                                      ++ ++l+lf++mt++ w + ++ ++        +++  +++v+f+il +++l N+++av  d+f
  KOO21167.1 174 rhildshtprgythgieywglYSRSMLTLFQIMTGDSWAEGVARPMTFGlyqksTFTVSFFMVSFFILTNMVLANVVVAVLLDQF 258
                 333333444444444445555*******************99999877778888999999999******************9998 PP

>> PKD_channel  Polycystin cation channel
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.1     0.065   5.9e+02     239     259 ..      66      86 ..      31      91 .. 0.75
   2 ?   11.8   3.3   7.6e-06     0.068     298     356 ..      88     146 ..      75     153 .. 0.71
   3 ?    3.6   1.5    0.0024        21     371     424 ..     198     259 ..     189     260 .. 0.66

  Alignments for each domain:
  == domain 1  score: -1.1 bits;  conditional E-value: 0.065
                  ------HHHHHHHHHHHHHHH CS
  PKD_channel 239 sylrsvwnlldlaivvlsvvl 259
                  +   s wn+ d++i ++ vvl
   KOO21167.1  66 RFWYSGWNVFDFVITAVGVVL 86 
                  444578999999999998886 PP

  == domain 2  score: 11.8 bits;  conditional E-value: 7.6e-06
                  HHHHHHHHHHHHHGGGGG------------------------HHHHHHHHHHHHHHHHH CS
  PKD_channel 298 riilavlvflttlkllkvlrfnktlslltktlaralkdvlgfalvivilflayaqlgvl 356
                    +++ +  l +l++++v r++k+++ l k + + l  v g+a ++vilf+ +++  +l
   KOO21167.1  88 SGVSGPISQLKLLRAFRVFRLFKRIKSLNKIVVSLLGSVPGVANAFVILFIFFCIYSIL 146
                  556677778999******************87776555555555555555555554443 PP

  == domain 3  score: 3.6 bits;  conditional E-value: 0.0024
                  HHHHHHHHHTT---HH........HHHHH-TTHHHHHHHHHHHHHHHHHHHHHHHHHHT-XX CS
  PKD_channel 371 siltlfrlilgdfqyt........elesgnrvLGpllllalvflvifillnlflaiindsye 424
                  s+ltlf+++ gd   +         l +   +    +++++ +l  ++l n+++a++ d+++
   KOO21167.1 198 SMLTLFQIMTGDSWAEgvarpmtfGLYQKSTFTVSFFMVSFFILTNMVLANVVVAVLLDQFV 259
                  66666666666643335555554444333334444566788888889999999999999986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (286 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       646  (0.036031); expected 358.6 (0.02)
Passed bias filter:                      292  (0.0162865); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.43u 0.24s 00:00:00.67 Elapsed: 00:00:00.38
# Mc/sec: 2233.48
//
Query:       KOO21168.1  [L=401]
Description: hypothetical protein Ctob_000102 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (401 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       914  (0.0509789); expected 358.6 (0.02)
Passed bias filter:                      526  (0.0293379); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.48u 0.25s 00:00:00.73 Elapsed: 00:00:00.38
# Mc/sec: 3128.58
//
Query:       KOO21169.1  [L=263]
Description: hypothetical protein Ctob_000101 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (263 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1431  (0.0798148); expected 358.6 (0.02)
Passed bias filter:                      480  (0.0267723); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.44u 0.23s 00:00:00.67 Elapsed: 00:00:00.37
# Mc/sec: 2127.26
//
Query:       KOO21170.1  [L=571]
Description: hypothetical protein Ctob_000100 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.8e-24   85.4   9.8    6.8e-10   39.3   1.3    5.3  6  EF-hand_7        EF-hand domain pair
      3e-20   70.2  13.4    0.00015   21.1   0.0    6.9  7  EF-hand_1        EF hand
    6.6e-19   66.2  12.8     0.0018   18.1   0.9    6.8  7  EF-hand_6        EF-hand domain
    1.1e-18   66.9  12.6    5.9e-10   38.8   0.6    5.7  5  EF-hand_8        EF-hand domain pair
    8.7e-09   34.5  14.6      0.003   17.0   0.0    5.5  6  EF-hand_5        EF hand
  ------ inclusion threshold ------
       0.01   16.1   1.3        3.4    8.0   0.2    3.6  3  SPARC_Ca_bdg     Secreted protein acidic and rich in cysteine
      0.012   15.6   2.2       0.13   12.2   0.5    3.4  3  EF-hand_4        Cytoskeletal-regulatory complex EF hand
      0.021   15.3   3.1        2.6    8.6   0.0    3.6  3  NPV_P10          Nucleopolyhedrovirus P10 protein
      0.025   14.0   1.8        0.2   11.0   0.0    2.6  3  Med14            Mediator complex subunit MED14
      0.065   13.4   2.9        6.1    7.0   0.1    3.4  3  p25-alpha        p25-alpha
      0.076   12.8   3.8       0.47   10.2   0.9    2.9  2  DUF4201          Domain of unknown function (DUF4201)
      0.099   12.4   0.1       0.23   11.2   0.1    1.5  1  PRT_C            Plant phosphoribosyltransferase C-terminal
       0.11   12.5   2.2        4.6    7.1   0.1    3.7  4  Caleosin         Caleosin related protein
       0.76    9.8   4.3        5.7    7.0   0.2    3.3  3  DUF1664          Protein of unknown function (DUF1664)
        1.4    9.0   6.0         11    6.0   2.2    2.7  2  UPF0242          Uncharacterised protein family (UPF0242) N-t
        1.8    9.1   5.7         16    6.2   0.1    2.9  2  FoP_duplication  C-terminal duplication domain of Friend of P
        7.7    6.5  11.1        7.3    6.6   0.4    3.4  3  Prefoldin_2      Prefoldin subunit


Domain annotation for each model (and alignments):
>> EF-hand_7  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.3   1.3   6.4e-13   6.8e-10       1      70 [.     170     233 ..     170     234 .. 0.96
   2 !   23.1   0.0   7.4e-08   7.8e-05      14      68 ..     258     303 ..     253     306 .. 0.86
   3 !   15.4   0.2   1.9e-05      0.02      41      69 ..     313     341 ..     308     352 .. 0.82
   4 ?   -1.2   0.1       2.7   2.9e+03      58      68 ..     441     451 ..     416     454 .. 0.53
   5 ?   -1.7   0.0       3.9   4.1e+03      17      29 ..     442     454 ..     435     472 .. 0.61
   6 !    8.4   0.0    0.0028         3       2      38 ..     481     518 ..     480     542 .. 0.78

  Alignments for each domain:
  == domain 1  score: 39.3 bits;  conditional E-value: 6.4e-13
   EF-hand_7   1 eeklkeaFkelDtdgdgyldkeellrllrkifqgagegsklsdeelellfkefDtdkdGvisfdEFlkly 70 
                 +ekl++ F  +D d  g++dk+el+ +l         g+k++de+l+++f+  D d+ G i++dEF k +
  KOO21170.1 170 DEKLRTLFAHMDADLGGSIDKDELKGALD------AAGKKVTDEQLQHMFDHADEDGGGDIDYDEFAKVV 233
                 589**********************9999......999999*************************9976 PP

  == domain 2  score: 23.1 bits;  conditional E-value: 7.4e-08
   EF-hand_7  14 dgdgyldkeellrllrkifqgagegsklsdeelellfkefDtdkdGvisfdEFlk 68 
                  ++ +l++eel+ +lr+         k+++    +++ efD +k+Gvis+ EF+ 
  KOO21170.1 258 KKRTKLTMEELEAALRR-----ALLTKTPK----EVLAEFDVNKNGVISRAEFRD 303
                 67889***********8.....77777455....7******************86 PP

  == domain 3  score: 15.4 bits;  conditional E-value: 1.9e-05
   EF-hand_7  41 lsdeelellfkefDtdkdGvisfdEFlkl 69 
                 + ++ l++lf+ fD+++d++i+ +E+++ 
  KOO21170.1 313 FKPKDLDALFDTFDHNRDHSIDINELQES 341
                 55667899999999999999999998875 PP

  == domain 4  score: -1.2 bits;  conditional E-value: 2.7
   EF-hand_7  58 dGvisfdEFlk 68 
                  G +++dEF +
  KOO21170.1 441 EGFMDLDEFTT 451
                 35566666655 PP

  == domain 5  score: -1.7 bits;  conditional E-value: 3.9
   EF-hand_7  17 gyldkeellrllr 29 
                 g++d +e+  l++
  KOO21170.1 442 GFMDLDEFTTLVK 454
                 5555555554444 PP

  == domain 6  score: 8.4 bits;  conditional E-value: 0.0028
   EF-hand_7   2 eklkeaFkelDtdgdgyldkee.llrllrkifqgageg 38 
                 ++++  F +lD  g+g++  ++ l+r++ + f+ ag++
  KOO21170.1 481 SEIQAQFAALDPEGTGSIQIRQsLKRMIDAEFARAGRD 518
                 578889*******************9999877766443 PP

>> EF-hand_1  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.2   0.1   0.00021      0.22       2      26 ..     173     197 ..     172     199 .. 0.91
   2 !   19.7   0.3   3.8e-07    0.0004       2      27 ..     209     234 ..     208     236 .. 0.92
   3 ?   -1.9   0.0         3   3.2e+03      16      28 ..     262     274 ..     261     275 .. 0.86
   4 !   21.1   0.0   1.4e-07   0.00015       3      27 ..     282     306 ..     282     308 .. 0.90
   5 !   16.6   0.5   3.9e-06    0.0041       1      28 [.     317     344 ..     317     345 .. 0.92
   6 ?    2.4   0.1      0.13   1.3e+02      15      28 ..     442     455 ..     442     456 .. 0.90
   7 ?    1.8   0.0       0.2   2.1e+02       1      18 [.     482     499 ..     482     502 .. 0.88

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00021
                 HHHHHHHHTTTSSSEEEHHHHHHHH CS
   EF-hand_1   2 lkeiFrefDkDgdGkIdfeEfkell 26 
                 l+ +F+++D D  G Id++E+k +l
  KOO21170.1 173 LRTLFAHMDADLGGSIDKDELKGAL 197
                 7889*****************9887 PP

  == domain 2  score: 19.7 bits;  conditional E-value: 3.8e-07
                 HHHHHHHHTTTSSSEEEHHHHHHHHH CS
   EF-hand_1   2 lkeiFrefDkDgdGkIdfeEfkellk 27 
                 l+ +F+++D Dg G Id++Ef +++k
  KOO21170.1 209 LQHMFDHADEDGGGDIDYDEFAKVVK 234
                 688*******************9987 PP

  == domain 3  score: -1.9 bits;  conditional E-value: 3
                 EEEHHHHHHHHHH CS
   EF-hand_1  16 kIdfeEfkellkk 28 
                 k++ eE+ ++l++
  KOO21170.1 262 KLTMEELEAALRR 274
                 6899****99986 PP

  == domain 4  score: 21.1 bits;  conditional E-value: 1.4e-07
                 HHHHHHHTTTSSSEEEHHHHHHHHH CS
   EF-hand_1   3 keiFrefDkDgdGkIdfeEfkellk 27 
                 ke+ +efD++++G I++ Ef++ ++
  KOO21170.1 282 KEVLAEFDVNKNGVISRAEFRDGVS 306
                 68999****************9876 PP

  == domain 5  score: 16.6 bits;  conditional E-value: 3.9e-06
                 HHHHHHHHHTTTSSSEEEHHHHHHHHHH CS
   EF-hand_1   1 elkeiFrefDkDgdGkIdfeEfkellkk 28 
                 +l+ +F+ fD ++d  Id++E++e +k+
  KOO21170.1 317 DLDALFDTFDHNRDHSIDINELQESFKS 344
                 5899*******************99887 PP

  == domain 6  score: 2.4 bits;  conditional E-value: 0.13
                 SEEEHHHHHHHHHH CS
   EF-hand_1  15 GkIdfeEfkellkk 28 
                 G++d++Ef +l+k+
  KOO21170.1 442 GFMDLDEFTTLVKA 455
                 99*******99985 PP

  == domain 7  score: 1.8 bits;  conditional E-value: 0.2
                 HHHHHHHHHTTTSSSEEE CS
   EF-hand_1   1 elkeiFrefDkDgdGkId 18 
                 e++  F+ +D  g+G I 
  KOO21170.1 482 EIQAQFAALDPEGTGSIQ 499
                 68889**********995 PP

>> EF-hand_6  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.7   0.1   4.4e-05     0.046       1      27 [.     172     198 ..     172     201 .. 0.91
   2 !   14.6   0.3   2.2e-05     0.023       2      27 ..     209     234 ..     208     237 .. 0.92
   3 ?    2.6   0.0      0.15   1.6e+02      16      28 ..     262     274 ..     257     278 .. 0.87
   4 !   15.6   0.0     1e-05     0.011       4      27 ..     283     306 ..     282     311 .. 0.86
   5 !   18.1   0.9   1.7e-06    0.0018       2      27 ..     318     343 ..     317     346 .. 0.88
   6 ?   -2.8   0.0       8.2   8.7e+03      15      24 ..     442     451 ..     442     455 .. 0.79
   7 ?    3.4   0.0     0.087        92       1      19 [.     482     500 ..     482     502 .. 0.86

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 4.4e-05
   EF-hand_6   1 elreaFklfDkdgdGkidaeElrkalr 27 
                 +lr +F ++D d  G+id++El+ al 
  KOO21170.1 172 KLRTLFAHMDADLGGSIDKDELKGALD 198
                 5899*******************9997 PP

  == domain 2  score: 14.6 bits;  conditional E-value: 2.2e-05
   EF-hand_6   2 lreaFklfDkdgdGkidaeElrkalr 27 
                 l++ F++ D dg G id++E+ k+ +
  KOO21170.1 209 LQHMFDHADEDGGGDIDYDEFAKVVK 234
                 899******************99876 PP

  == domain 3  score: 2.6 bits;  conditional E-value: 0.15
   EF-hand_6  16 kidaeElrkalrk 28 
                 k+++eEl +alr+
  KOO21170.1 262 KLTMEELEAALRR 274
                 79*********95 PP

  == domain 4  score: 15.6 bits;  conditional E-value: 1e-05
   EF-hand_6   4 eaFklfDkdgdGkidaeElrkalr 27 
                 e+  +fD++++G i+++E+r+  +
  KOO21170.1 283 EVLAEFDVNKNGVISRAEFRDGVS 306
                 66789***************9765 PP

  == domain 5  score: 18.1 bits;  conditional E-value: 1.7e-06
   EF-hand_6   2 lreaFklfDkdgdGkidaeElrkalr 27 
                 l+++F+ fD+++d +id++El+  ++
  KOO21170.1 318 LDALFDTFDHNRDHSIDINELQESFK 343
                 789******************98666 PP

  == domain 6  score: -2.8 bits;  conditional E-value: 8.2
   EF-hand_6  15 GkidaeElrk 24 
                 G+ d +E+  
  KOO21170.1 442 GFMDLDEFTT 451
                 8999999966 PP

  == domain 7  score: 3.4 bits;  conditional E-value: 0.087
   EF-hand_6   1 elreaFklfDkdgdGkida 19 
                 e+++ F ++D +g+G+i +
  KOO21170.1 482 EIQAQFAALDPEGTGSIQI 500
                 57788***********986 PP

>> EF-hand_8  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.0   0.2   0.00013      0.14      24      50 ..     169     195 ..     156     197 .. 0.85
   2 !   38.8   0.6   5.6e-13   5.9e-10       2      52 ..     185     233 ..     184     234 .. 0.94
   3 ?    2.6   0.0      0.12   1.2e+02       4      26 ..     262     282 ..     259     290 .. 0.78
   4 !   25.9   0.2   6.1e-09   6.4e-06       2      47 ..     293     337 ..     292     344 .. 0.92
   5 ?    0.6   0.0       0.5   5.3e+02      18      41 ..     474     496 ..     441     499 .. 0.51

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 0.00013
   EF-hand_8  24 seeevdilfrefDtdgdGkisfeEFcv 50 
                 ++e++++lf ++D d  G i+++E   
  KOO21170.1 169 NDEKLRTLFAHMDADLGGSIDKDELKG 195
                 7888********************875 PP

  == domain 2  score: 38.8 bits;  conditional E-value: 5.6e-13
   EF-hand_8   2 kgkItreelrril.rilglkkglseeevdilfrefDtdgdGkisfeEFcvll 52 
                 +g+I+++el+ +l ++ g+k  +++e+++++f+++D+dg G i+++EF  ++
  KOO21170.1 185 GGSIDKDELKGALdAA-GKK--VTDEQLQHMFDHADEDGGGDIDYDEFAKVV 233
                 69***********888.999..**************************9765 PP

  == domain 3  score: 2.6 bits;  conditional E-value: 0.12
   EF-hand_8   4 kItreelrril.rilglkkglsee 26 
                 k+t+eel  +l r+l +k  + ++
  KOO21170.1 262 KLTMEELEAALrRALLTK--T-PK 282
                 79************9888..3.33 PP

  == domain 4  score: 25.9 bits;  conditional E-value: 6.1e-09
   EF-hand_8   2 kgkItreelrril.rilglkkglseeevdilfrefDtdgdGkisfeE 47 
                 +g+I+r+e+r+ + +il+l+  + ++++d+lf++fD ++d  i+ +E
  KOO21170.1 293 NGVISRAEFRDGVsNILKLE--FKPKDLDALFDTFDHNRDHSIDINE 337
                 79***********9999999..******************9999887 PP

  == domain 5  score: 0.6 bits;  conditional E-value: 0.5
   EF-hand_8  18 glkkglseeevdilfrefDtdgdG 41 
                 g+   l  +e+++ f ++D +g G
  KOO21170.1 474 GQT-ALDQSEIQAQFAALDPEGTG 496
                 222.25556666666666666655 PP

>> EF-hand_5  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.2   0.0     0.031        33       4      22 ..     176     194 ..     173     197 .. 0.76
   2 !    8.7   0.2    0.0012       1.2       1      25 []     209     233 ..     209     233 .. 0.92
   3 ?   -1.0   0.0       1.4   1.5e+03      15      23 ..     262     270 ..     262     272 .. 0.84
   4 !   17.0   0.0   2.8e-06     0.003       4      23 ..     284     303 ..     282     306 .. 0.87
   5 !   10.8   0.5   0.00026      0.27       1      24 [.     318     342 ..     318     343 .. 0.90
   6 ?   -2.9   0.0       5.6   5.9e+03      17      25 .]     445     453 ..     442     453 .. 0.75

  Alignments for each domain:
  == domain 1  score: 4.2 bits;  conditional E-value: 0.031
                 HHHHH-SS-SSCE-HHHHH CS
   EF-hand_5   4 tFqaiDlNgDGkIskeELk 22 
                 +F  +D++  G I+k+ELk
  KOO21170.1 176 LFAHMDADLGGSIDKDELK 194
                 5666777777********8 PP

  == domain 2  score: 8.7 bits;  conditional E-value: 0.0012
                 HHHHHHHH-SS-SSCE-HHHHHHHH CS
   EF-hand_5   1 lkdtFqaiDlNgDGkIskeELktlv 25 
                 l+++F+ +D +g G I+ +E+ ++v
  KOO21170.1 209 LQHMFDHADEDGGGDIDYDEFAKVV 233
                 6889*****************9976 PP

  == domain 3  score: -1.0 bits;  conditional E-value: 1.4
                 CE-HHHHHH CS
   EF-hand_5  15 kIskeELkt 23 
                 k+++eEL++
  KOO21170.1 262 KLTMEELEA 270
                 799****86 PP

  == domain 4  score: 17.0 bits;  conditional E-value: 2.8e-06
                 HHHHH-SS-SSCE-HHHHHH CS
   EF-hand_5   4 tFqaiDlNgDGkIskeELkt 23 
                 ++ ++D+N+ G Is+ E++ 
  KOO21170.1 284 VLAEFDVNKNGVISRAEFRD 303
                 6789**************85 PP

  == domain 5  score: 10.8 bits;  conditional E-value: 0.00026
                 HHHHHHHH-SS-SSCE-HHHHHH.H CS
   EF-hand_5   1 lkdtFqaiDlNgDGkIskeELkt.l 24 
                 l+++F+ +D N+D  I++ EL++ +
  KOO21170.1 318 LDALFDTFDHNRDHSIDINELQEsF 342
                 6889*****************9855 PP

  == domain 6  score: -2.9 bits;  conditional E-value: 5.6
                 -HHHHHHHH CS
   EF-hand_5  17 skeELktlv 25 
                 + +E+ tlv
  KOO21170.1 445 DLDEFTTLV 453
                 789999876 PP

>> SPARC_Ca_bdg  Secreted protein acidic and rich in cysteine Ca binding region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.7   0.1     0.035        37      55     112 ..     172     231 ..     141     232 .. 0.79
   2 ?    8.0   0.2    0.0033       3.4      61     110 ..     286     338 ..     249     341 .. 0.74
   3 ?    3.9   0.2     0.062        66      60      80 ..     322     342 ..     306     361 .. 0.78

  Alignments for each domain:
  == domain 1  score: 4.7 bits;  conditional E-value: 0.035
  SPARC_Ca_bdg  55 pvawkFsklDtnsdkvlsksELa.plrapl.vklehCikpflescDadkdkkislkEwce 112
                   +++  F ++D +  ++++k EL+ +l a     +++  +++++++D d  ++i+  E+++
    KOO21170.1 172 KLRTLFAHMDADLGGSIDKDELKgALDAAGkKVTDEQLQHMFDHADEDGGGDIDYDEFAK 231
                   566679999999999999999983455543134677889999999*99999999999975 PP

  == domain 2  score: 8.0 bits;  conditional E-value: 0.0033
  SPARC_Ca_bdg  61 sklDtnsdkvlsksELaplraplvkle...hCikpflescDadkdkkislkEw 110
                    ++D+n+++v+s++E ++  +++ kle   +  ++++++ D ++d++i+ +E 
    KOO21170.1 286 AEFDVNKNGVISRAEFRDGVSNILKLEfkpKDLDALFDTFDHNRDHSIDINEL 338
                   57899**********998888888888433567889*************9996 PP

  == domain 3  score: 3.9 bits;  conditional E-value: 0.062
  SPARC_Ca_bdg  60 FsklDtnsdkvlsksELaplr 80 
                   F+++D n+d++++ +EL++  
    KOO21170.1 322 FDTFDHNRDHSIDINELQESF 342
                   788888888888888887655 PP

>> EF-hand_4  Cytoskeletal-regulatory complex EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.3   0.0         1   1.1e+03      32      65 ..     160     193 ..     146     200 .. 0.80
   2 ?   12.2   0.5   0.00013      0.13      38      69 ..     202     233 ..     168     237 .. 0.83
   3 ?    0.1   0.0      0.72   7.6e+02      31      67 ..     305     340 ..     259     390 .. 0.79

  Alignments for each domain:
  == domain 1  score: -0.3 bits;  conditional E-value: 1
   EF-hand_4  32 apvlknskleedklekiwdladidedgkldfeef 65 
                 a+ l  +  +++kl  ++   d d  g++d +e+
  KOO21170.1 160 ASSLDAALHNDEKLRTLFAHMDADLGGSIDKDEL 193
                 455666667889999***99****99**999986 PP

  == domain 2  score: 12.2 bits;  conditional E-value: 0.00013
   EF-hand_4  38 skleedklekiwdladidedgkldfeefciam 69 
                  k+++++l++++d ad d  g++d++ef+ ++
  KOO21170.1 202 KKVTDEQLQHMFDHADEDGGGDIDYDEFAKVV 233
                 57899***********************8665 PP

  == domain 3  score: 0.1 bits;  conditional E-value: 0.72
   EF-hand_4  31 vapvlknskleedklekiwdladidedgkldfeefci 67 
                 v+++lk  +++ + l+ ++d  d + d ++d +e+  
  KOO21170.1 305 VSNILKL-EFKPKDLDALFDTFDHNRDHSIDINELQE 340
                 5555553.45666788888888888888888887654 PP

>> NPV_P10  Nucleopolyhedrovirus P10 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.6   0.0    0.0025       2.6      34      71 ..      82     116 ..      58     124 .. 0.79
   2 ?    4.9   0.2     0.034        36      27      59 ..     335     367 ..     328     384 .. 0.73
   3 ?   -1.6   0.0       3.7   3.9e+03       8      46 ..     452     489 ..     449     492 .. 0.67

  Alignments for each domain:
  == domain 1  score: 8.6 bits;  conditional E-value: 0.0025
     NPV_P10  34 lpdvtelnekLdaqsaqLaeletkvenIqdiLnpdevP 71 
                 l     l+e L+a  a+L ++e+++e+I++ L ++e+P
  KOO21170.1  82 L---APLEELLEAKRAELGQVENELESINEELEEPEEP 116
                 3...347888**********************955555 PP

  == domain 2  score: 4.9 bits;  conditional E-value: 0.034
     NPV_P10  27 vddvqenlpdvtelnekLdaqsaqLaeletkve 59 
                 ++++qe ++ + e+++++ aq a+L +  +k++
  KOO21170.1 335 INELQESFKSLREVTKRIKAQVANLRAQRAKLK 367
                 577777777777777777777777766555554 PP

  == domain 3  score: -1.6 bits;  conditional E-value: 3.7
     NPV_P10   8 vIradikavddkVdalqqqvddvqenlpdvtelnekLda 46 
                 +++a+ +a ++k++a q+  +  q+ l + +e+++++ a
  KOO21170.1 452 LVKAELTASKSKLTAAQTLFNLGQTALDQ-SEIQAQFAA 489
                 56677778888888888876666665555.666666554 PP

>> Med14  Mediator complex subunit MED14
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.4   0.0      0.17   1.8e+02     131     165 ..     252     284 ..     235     299 .. 0.76
   2 ?   11.0   0.0   0.00019       0.2      79     163 ..     338     422 ..     324     428 .. 0.77
   3 ?   -4.0   0.1       7.6   8.1e+03      62     102 ..     518     558 ..     512     563 .. 0.69

  Alignments for each domain:
  == domain 1  score: 1.4 bits;  conditional E-value: 0.17
                 --S---SHHHHHHHHHHHHHHHHHHHHBS---CCG CS
       Med14 131 ppkpltakeilktlkdlnelirlrLalhekiPkef 165
                  +++ t+k+++ t+++l++++r  L +  k Pke+
  KOO21170.1 252 HQEAATKKRTKLTMEELEAALRRALLT--KTPKEV 284
                 6788999****************9993..466654 PP

  == domain 2  score: 11.0 bits;  conditional E-value: 0.00019
                 HHHCCCCCHCCCCCHHHHHHCCHHHHHHHHCHHCHCTTCHCHCCCCCCSCSH--S--..-SHHHHHHHHHHHHHHHHHHHHBS---C CS
       Med14  79 qneafedaadalkelkeslanaklpnpdlktAleVLstGrysrlpslikeeyppkpl..takeilktlkdlnelirlrLalhekiPk 163
                  +e f+ + +  k +k ++an +++   lktAl VL   r+ +++ + +  +++++l  + +  +++  ++ +++  r++ +e+ Pk
  KOO21170.1 338 LQESFKSLREVTKRIKAQVANLRAQRAKLKTALVVLEARRA-DVSAVTQASFDEDALlvAHRSAQRVDAKVGAVLNGRIK-SESNPK 422
                 56778888888999************************999.88877755575555545666677777777777777777.555555 PP

  == domain 3  score: -4.0 bits;  conditional E-value: 7.6
                 GHHHCCHHHHHHHHHHHHHHCCCCCHCCCCCHHHHHHCCHH CS
       Med14  62 kaekvsklidllaflrqqneafedaadalkelkeslanakl 102
                 +a+ v+ + + +a   + ++af++++ +  + +++ a a +
  KOO21170.1 518 DAALVTSCAERKAAALEAQAAFKKLVFEFVQQEQEAADAAM 558
                 56677777777777777777777777777777777666655 PP

>> p25-alpha  p25-alpha
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.0   0.1    0.0058       6.1      36      75 ..     201     240 ..     196     263 .. 0.90
   2 ?   -1.1   0.0       1.9     2e+03      53      82 ..     257     286 ..     250     299 .. 0.75
   3 ?    4.3   0.2     0.038        40      33      74 ..     307     348 ..     304     392 .. 0.73

  Alignments for each domain:
  == domain 1  score: 7.0 bits;  conditional E-value: 0.0058
   p25-alpha  36 dkkvtstdvDiiFsKvkaksarkitfeqfkealeelaekk 75 
                 +kkvt ++   +F    + +  +i++++f ++++ + +++
  KOO21170.1 201 GKKVTDEQLQHMFDHADEDGGGDIDYDEFAKVVKGVKASR 240
                 59********************************998775 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 1.9
   p25-alpha  53 aksarkitfeqfkealeelaekkfkkkkke 82 
                 +k++ k+t+e+ ++al+     k +k++  
  KOO21170.1 257 TKKRTKLTMEELEAALRRALLTKTPKEVLA 286
                 678889999999999999887777766555 PP

  == domain 3  score: 4.3 bits;  conditional E-value: 0.038
   p25-alpha  33 kiidkkvtstdvDiiFsKvkaksarkitfeqfkealeelaek 74 
                 +i+  +++ +d D +F  +  + + +i++++ +e  + l e 
  KOO21170.1 307 NILKLEFKPKDLDALFDTFDHNRDHSIDINELQESFKSLREV 348
                 567778999*************************99988655 PP

>> DUF4201  Domain of unknown function (DUF4201)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.0   0.1      0.15   1.5e+02     103     130 ..      85     112 ..      47     124 .. 0.63
   2 ?   10.2   0.9   0.00044      0.47      94     134 ..     329     369 ..     326     375 .. 0.90

  Alignments for each domain:
  == domain 1  score: 2.0 bits;  conditional E-value: 0.15
     DUF4201 103 keerlaklrkelykvklerdklrkqnek 130
                 +ee l++ r+el +v++e + + ++ e+
  KOO21170.1  85 LEELLEAKRAELGQVENELESINEELEE 112
                 4444444444444444444444444444 PP

  == domain 2  score: 10.2 bits;  conditional E-value: 0.00044
     DUF4201  94 selkkelkekeerlaklrkelykvklerdklrkqneklkqq 134
                 +++  +++e++e  ++lr+ + + k++ ++lr+q++klk+ 
  KOO21170.1 329 RDHSIDINELQESFKSLREVTKRIKAQVANLRAQRAKLKTA 369
                 567889********************************986 PP

>> PRT_C  Plant phosphoribosyltransferase C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.1   0.00022      0.23      37      95 ..     314     376 ..     305     388 .. 0.78

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00022
       PRT_C  37 npdeLdEEFDsfPssrdldv....vrmRYdrlRsvagrvqtvlGdvAtqgErlqallswrDpr 95 
                 +p +Ld  FD+f  +rd  +    ++  +  lR+v++r++  + ++ +q  +l+++l   + r
  KOO21170.1 314 KPKDLDALFDTFDHNRDHSIdineLQESFKSLREVTKRIKAQVANLRAQRAKLKTALVVLEAR 376
                 6889********9888654333448999***********************998766554443 PP

>> Caleosin  Caleosin related protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.1   0.0      0.32   3.4e+02      83     122 ..     196     236 ..     141     245 .. 0.86
   2 ?   -0.6   0.0       1.1   1.1e+03      13      32 ..     288     307 ..     282     311 .. 0.85
   3 ?    7.1   0.1    0.0044       4.6      89     126 ..     312     349 ..     309     362 .. 0.89
   4 ?   -0.3   0.0      0.86   9.1e+02      94     125 ..     426     459 ..     421     475 .. 0.81

  Alignments for each domain:
  == domain 1  score: 1.1 bits;  conditional E-value: 0.32
    Caleosin  83 aYdeeGr.fvpqkfeeifskyakekkdaltlkevlellkgq 122
                 a d+ G+  + ++++++f++ +++  + + ++e+ +++kg 
  KOO21170.1 196 ALDAAGKkVTDEQLQHMFDHADEDGGGDIDYDEFAKVVKGV 236
                 56777752456899999*99999999999999999999875 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 1.1
    Caleosin  13 fDrdkdGiiypldtyrgfra 32 
                 fD +k+G+i   +   g+ +
  KOO21170.1 288 FDVNKNGVISRAEFRDGVSN 307
                 9********99998888765 PP

  == domain 3  score: 7.1 bits;  conditional E-value: 0.0044
    Caleosin  89 rfvpqkfeeifskyakekkdaltlkevlellkgqreal 126
                 +f p+ ++++f+ +++++++++ ++e++e +k+ re++
  KOO21170.1 312 EFKPKDLDALFDTFDHNRDHSIDINELQESFKSLREVT 349
                 699**************************999988875 PP

  == domain 4  score: -0.3 bits;  conditional E-value: 0.86
    Caleosin  94 kfeeifskyakekk..daltlkevlellkgqrea 125
                  fe++ +k+++++k  + + l+e+++l+k++ +a
  KOO21170.1 426 SFEDMVAKWDNRRKveGFMDLDEFTTLVKAELTA 459
                 59********997655889999999999887655 PP

>> DUF1664  Protein of unknown function (DUF1664)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.7   0.1      0.12   1.3e+02      65     104 ..      72     111 ..      56     115 .. 0.83
   2 ?    7.0   0.2    0.0054       5.7      49     103 ..     317     370 ..     302     381 .. 0.78
   3 ?   -2.3   0.1       4.2   4.4e+03      53      84 ..     453     486 ..     444     489 .. 0.61

  Alignments for each domain:
  == domain 1  score: 2.7 bits;  conditional E-value: 0.12
     DUF1664  65 ssridrvdkkldeqkeiskeikeevtevredlseigedve 104
                 +sr++ +++ l   +e+ ++ ++e+ +v+++l++i+e++e
  KOO21170.1  72 TSRVEPLNELLAPLEELLEAKRAELGQVENELESINEELE 111
                 6889999999999999999999999999999999999887 PP

  == domain 2  score: 7.0 bits;  conditional E-value: 0.0054
     DUF1664  49 qleqvseslaatkrhLssridrvdkkldeqkeiskeikeevtevredlseigedv 103
                 +l+ + ++  + ++h s +i++++++ ++  e++k ik++v+++r + +++++ +
  KOO21170.1 317 DLDALFDTFDHNRDH-SIDINELQESFKSLREVTKRIKAQVANLRAQRAKLKTAL 370
                 566666666666666.667999999999999999999999999988877777654 PP

  == domain 3  score: -2.3 bits;  conditional E-value: 4.2
     DUF1664  53 vseslaatkrhLs..sridrvdkkldeqkeiske 84 
                 v+++l+a k +L+  + + +++++  +q+ei+++
  KOO21170.1 453 VKAELTASKSKLTaaQTLFNLGQTALDQSEIQAQ 486
                 5566677777765334566666666666666655 PP

>> UPF0242  Uncharacterised protein family (UPF0242) N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.0   2.2     0.011        11      69     128 ..      51     112 ..      35     184 .. 0.77
   2 ?    3.8   0.1     0.052        55     149     178 ..     333     362 ..     305     394 .. 0.71

  Alignments for each domain:
  == domain 1  score: 6.0 bits;  conditional E-value: 0.011
     UPF0242  69 kleekeaklteld.e.glktkeealeelqeeeeeLkeeldakeeelerlkeenqqLqeklea 128
                 k e+k++ l   + e  l+++   +e l+e    L+e l+ak  el + ++e ++++e+le+
  KOO21170.1  51 KSEKKKSALDTVSeEgVLEQETSRVEPLNELLAPLEELLEAKRAELGQVENELESINEELEE 112
                 33444444433332204556666888888888888888888888888888888888888876 PP

  == domain 2  score: 3.8 bits;  conditional E-value: 0.052
     UPF0242 149 ellqeyqetieeqrsvlekrqdqieqLesk 178
                 + ++e+qe+++++r+v ++ ++q+++L ++
  KOO21170.1 333 IDINELQESFKSLREVTKRIKAQVANLRAQ 362
                 345666666666666666666666666543 PP

>> FoP_duplication  C-terminal duplication domain of Friend of PRMT1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.7   2.4      0.17   1.8e+02      16      51 ..      30      58 ..      14      62 .. 0.39
   2 ?    6.2   0.1     0.015        16      31      56 ..     247     272 ..     234     285 .. 0.81

  Alignments for each domain:
  == domain 1  score: 2.7 bits;  conditional E-value: 0.17
  FoP_duplication 16 grrgrgrggrggrggrgrgrggrggrkkkkpltkee 51
                      r    + ++ + ++ +rg+ +++g   k ++ k  
       KOO21170.1 30 HR----GDTPSKEKKSSRGKAEKKG---KSEKKKSA 58
                     22....2222223333333333333...44444444 PP

  == domain 2  score: 6.2 bits;  conditional E-value: 0.015
  FoP_duplication  31 rgrgrggrggrkkkkpltkeeLDaeL 56 
                      rg  r++ + +kk+++lt eeL+a+L
       KOO21170.1 247 RGVRRHQEAATKKRTKLTMEELEAAL 272
                      45556666668899**********98 PP

>> Prefoldin_2  Prefoldin subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.3   1.1     0.018        19      59      95 ..      77     113 ..      75     116 .. 0.84
   2 ?   -2.8   0.1       5.6   5.9e+03      28      39 ..     258     269 ..     252     284 .. 0.60
   3 ?    6.6   0.4    0.0069       7.3       2      39 ..     337     374 ..     335     384 .. 0.74

  Alignments for each domain:
  == domain 1  score: 5.3 bits;  conditional E-value: 0.018
                  -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
  Prefoldin_2  59 dkeevkeeLeerketlekeiktlekqleklekeleel 95 
                  +++e+++ Lee +e   +e+ ++e++le++++elee 
   KOO21170.1  77 PLNELLAPLEELLEAKRAELGQVENELESINEELEEP 113
                  5678888899999999999999999999999999985 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 5.6
                  HHHHHHHHHHHH CS
  Prefoldin_2  28 lkelelvleele 39 
                  +k+ +l+ eele
   KOO21170.1 258 KKRTKLTMEELE 269
                  334444444443 PP

  == domain 3  score: 6.6 bits;  conditional E-value: 0.0069
                  HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
  Prefoldin_2   2 elinkfqqlqqqlqqlaqqikqletqlkelelvleele 39 
                  el++ f+ l++  + +++q+++l++q  +l+++l  le
   KOO21170.1 337 ELQESFKSLREVTKRIKAQVANLRAQRAKLKTALVVLE 374
                  56777777777777888888888888777777776666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (571 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1495  (0.0833845); expected 358.6 (0.02)
Passed bias filter:                      574  (0.0320152); expected 358.6 (0.02)
Passed Vit filter:                        80  (0.00446204); expected 17.9 (0.001)
Passed Fwd filter:                        24  (0.00133861); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              17  [number of targets reported over threshold]
# CPU time: 0.72u 0.28s 00:00:01.00 Elapsed: 00:00:00.46
# Mc/sec: 3759.95
//
Query:       KOO21171.1  [L=1112]
Description: hypothetical protein Ctob_000107 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    9.5e-15   54.8   0.0    1.4e-14   54.3   0.0    1.2  1  RabGAP-TBC    Rab-GTPase-TBC domain
  ------ inclusion threshold ------
        3.8    6.4   5.3         12    4.7   0.9    2.2  2  IFT57         Intra-flagellar transport protein 57
          4    6.7  11.6        1.8    7.9   4.9    2.4  2  GAS           Growth-arrest specific micro-tubule binding


Domain annotation for each model (and alignments):
>> RabGAP-TBC  Rab-GTPase-TBC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.3   0.0   2.3e-18   1.4e-14      47     215 .]     850    1026 ..     820    1026 .. 0.87

  Alignments for each domain:
  == domain 1  score: 54.3 bits;  conditional E-value: 2.3e-18
  RabGAP-TBC   47 lsqIkkDvprtfp....esesfknkqgqnqLeriLkaysiynp....evgYcqGmndivaplllvsldeeeaFwcfvsLlekyklrdlytsslpglk 135 
                  l  I +D+prt p    e+  ++ +   ++L+ iL a     +    +vgY qGm d++a ll+  l+ + a+ ++ ++ +   lr   + +l++  
  KOO21171.1  850 LDVILNDIPRTWPdwqiETVGESGRFSAEDLRVILDAQVCAAEsdlgAVGYSQGMADLAAWLLMRPLSRTAAYSALRRFSSLPLLRLCWRLDLDEWD 946 
                  677999*******875444555555788999999998777777777899**************9999*************999************** PP

  RabGAP-TBC  136 rklkvleellkkkdpklykhlkeegldlelfaikwfltlflrefpletvlrlwD.lllegekfvllrvalailklleeell 215 
                  +  ++   l+++  p ++ hl+++g+   +++ +w++ + +r+++ e+v+ ++  +lleg+ + +l va a++ + e+ell
  KOO21171.1  947 ALGELHTALIRRDRPVVAAHLDRIGISAAIYLPEWLMPIWCRSLSEECVAVVFSlMLLEGDAV-ILLVASAVIACIEAELL 1026
                  ******************************************************8888**966.99999999999998886 PP

>> IFT57  Intra-flagellar transport protein 57
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.3   0.2    0.0055        33     274     344 ..     180     250 ..     176     253 .. 0.92
   2 ?    4.7   0.9     0.002        12     233     317 ..     384     469 ..     377     480 .. 0.87

  Alignments for each domain:
  == domain 1  score: 3.3 bits;  conditional E-value: 0.0055
       IFT57 274 ellqeyreaqeelsevkekykqlsegvseltrelaeiseelekvkqemeergssmtDgsplvkikkaltkl 344
                 ++++ +++a++el+++   ++q+++++     el ++ ee + v  ++ +   + +++ pl +  + l+k+
  KOO21171.1 180 KMVAAHQAAKAELEKAMAAIEQAEATLARADAELVRLVEEAQPVALKVASSARRDAENGPLSQAAEELAKV 250
                 5678899*****************************************************99988888775 PP

  == domain 2  score: 4.7 bits;  conditional E-value: 0.002
       IFT57 233 kksieeslpetksqlkklhedisktlekiesrEkylnsqleellqe.yreaqeelsevkekykqlsegvseltrelaeiseelekv 317
                 + +++e++++  ++lk l  + +++ +++++ E  l + +++  +e + + ++e +++   ++ +s+++++++ e a++ ee+   
  KOO21171.1 384 QVTLAEEYEKKDKALKLLVGKRDEAAHQVSKLEGELGKLIDKREEEwHAAGSKEGAKAVAAVERASASLEKKSAEHAKLVEEVALK 469
                 56789999999***********************************555568899************************9998755 PP

>> GAS  Growth-arrest specific micro-tubule binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.4   0.5     0.014        84      61     100 ..     180     219 ..     145     263 .. 0.66
   2 ?    7.9   4.9    0.0003       1.8      92     188 ..     389     482 ..     380     486 .. 0.93

  Alignments for each domain:
  == domain 1  score: 2.4 bits;  conditional E-value: 0.014
         GAS  61 epLkkaeeeveeLrkqlknyekdkqslknlkarlkeleke 100
                 + + + ++ ++eL+k+++  e+  + l+++ a+l +l +e
  KOO21171.1 180 KMVAAHQAAKAELEKAMAAIEQAEATLARADAELVRLVEE 219
                 3344445555555555555555555555555555444444 PP

  == domain 2  score: 7.9 bits;  conditional E-value: 0.0003
         GAS  92 arlkelekelkdlkwehevleqrfekvekerdelykkfeaaiqevqqktglknllLekklkalqeelEkkeaqleevlaaanldpaalsavseklee 188
                 +++++ +k lk l  + +   ++++k+e e  +l +k e+  + +  k g k++     +++ +++lEkk a+ ++++++  l+++al+++++++e 
  KOO21171.1 389 EEYEKKDKALKLLVGKRDEAAHQVSKLEGELGKLIDKREEEWHAAGSKEGAKAVAA---VERASASLEKKSAEHAKLVEEVALKTTALEQAAAEIEA 482
                 6789999999999****************************************986...7778899*************************999986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1112 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       838  (0.0467399); expected 358.6 (0.02)
Passed bias filter:                      366  (0.0204139); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.79u 0.28s 00:00:01.07 Elapsed: 00:00:00.46
# Mc/sec: 7304.22
//
Query:       KOO21172.1  [L=197]
Description: hypothetical protein Ctob_000106 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.6e-05   23.9   0.0    4.6e-05   23.1   0.0    1.4  1  B12D      NADH-ubiquinone reductase complex 1 MLRQ subunit


Domain annotation for each model (and alignments):
>> B12D  NADH-ubiquinone reductase complex 1 MLRQ subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.1   0.0   2.6e-09   4.6e-05       3      39 ..     102     138 ..     100     143 .. 0.93

  Alignments for each domain:
  == domain 1  score: 23.1 bits;  conditional E-value: 2.6e-09
        B12D   3 peliPLfvfigagvggavfylvRllltnPDVrwnkkn 39 
                  ++ PL++ ig+++ ++ f+++++ ++++++ w+k+ 
  KOO21172.1 102 HAVTPLYAVIGLATLLMFFFMWKYFTRHTEIAWSKSL 138
                 589********************************85 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (197 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       498  (0.0277762); expected 358.6 (0.02)
Passed bias filter:                      360  (0.0200792); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.24s 00:00:00.65 Elapsed: 00:00:00.49
# Mc/sec: 1210.44
//
Query:       KOO21173.1  [L=132]
Description: ubiquitin-conjugating enzyme e2 n, partial [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.7e-45  153.4   0.0      3e-45  153.3   0.0    1.0  1  UQ_con     Ubiquitin-conjugating enzyme
    2.3e-05   24.1   0.0    2.8e-05   23.8   0.0    1.1  1  Prok-E2_B  Prokaryotic E2 family B
      0.005   16.7   0.1     0.0077   16.1   0.1    1.4  1  UEV        UEV domain
  ------ inclusion threshold ------
      0.044   14.1   0.2       0.06   13.6   0.2    1.4  1  RWD        RWD domain


Domain annotation for each model (and alignments):
>> UQ_con  Ubiquitin-conjugating enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  153.3   0.0   6.8e-49     3e-45      18     131 ..      16     128 ..       2     132 .] 0.91

  Alignments for each domain:
  == domain 1  score: 153.3 bits;  conditional E-value: 6.8e-49
                 EEEEEETTEECEEEEEEEB.TTSTTTTEEEEEEEE--TTTTTS--EEEESST-SCTTBETTSBB-CGGGSTTT--TTSHHHHHHHHHHHHHHS--TTS- CS
      UQ_con  18 saklvddenlfewkvlikgpedtpYeggvFklelefpedYPlkpPkvkfvtkifHPnvdksGevcldiLkeekWspaltlesvllsiqsLlaepnpesp 116
                 ++ +++ +nl  ++v+++gp+++pYegg+Fklel +pe+YP+ pPkv+f tk++HPn+dk G++cldiLk++ Wspal++++vllsiq+Ll+ pnp++p
  KOO21173.1  16 QRLMTEPDNLRYFNVVMQGPSESPYEGGTFKLELFLPEEYPMAPPKVRFLTKMYHPNIDKLGRICLDILKDK-WSPALQIRTVLLSIQALLSAPNPDDP 113
                 44455558**************************************************************55.************************** PP

                 SSHHHHHHHHHTHHH CS
      UQ_con 117 lnkeaakllkkdree 131
                 l +++a+++k+++ e
  KOO21173.1 114 LANDVAEMWKTNEPE 128
                 ***********9544 PP

>> Prok-E2_B  Prokaryotic E2 family B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.8   0.0   6.2e-09   2.8e-05      33     129 ..      37     126 ..      11     130 .. 0.79

  Alignments for each domain:
  == domain 1  score: 23.8 bits;  conditional E-value: 6.2e-09
   Prok-E2_B  33 t...sggtvdlrlvypdsfpllppavflqdpeqlkllpHintfg.gaLClleeeldldewdpngsvadvleqlqqvLn.egisgdedaefagEfqsYwe 126
                 +   +ggt++l+l +p+++p +pp+v+          +H n ++ g +Cl       d+w p+  ++ vl ++q++L   ++ +      a+ +++ w+
  KOO21173.1  37 EspyEGGTFKLELFLPEEYPMAPPKVRFLTKM-----YHPNIDKlGRICL---DILKDKWSPALQIRTVLLSIQALLSaPNPDDPL----ANDVAEMWK 123
                 04448*********************886555.....78888557*****...999*********************977777666....555555555 PP

   Prok-E2_B 127 see 129
                   e
  KOO21173.1 124 TNE 126
                 555 PP

>> UEV  UEV domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.1   1.7e-06    0.0077      51     120 ..      46     113 ..      14     114 .. 0.76

  Alignments for each domain:
  == domain 1  score: 16.1 bits;  conditional E-value: 1.7e-06
                 EEEEE--TTTTTS--EEEE-GCC--TSGGGGGB-TTSBB--HHHH.S--T..TT--HHHHHHHHHH-----XX CS
         UEV  51 PiliwvlesyPveaPivyvkptksmvikknenvdaqGlvylpyLe.eWkr..eksnlvslvqelaqafeeesP 120
                  ++++++e+yP+++P v    +       + n+d+ G++ l++L+ +W++  +  +++  +q l +a + + P
  KOO21173.1  46 KLELFLPEEYPMAPPKVRFLTKMY-----HPNIDKLGRICLDILKdKWSPalQIRTVLLSIQALLSAPNPDDP 113
                 4689***********986544433.....569************73688855455566777777777777666 PP

>> RWD  RWD domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.2   1.3e-05      0.06      54      79 ..      44      75 ..      26     129 .. 0.75

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 1.3e-05
                EEEEEEEE-SSTTSS--EEEEEECC......S CS
                xxxxxxxxxxxxxxxxxxxxxxxxx......x RF
         RWD 54 slkleiklpeeYPeeaPiislsste......n 79
                ++kle  lpeeYP  +P++++ ++       +
  KOO21173.1 44 TFKLELFLPEEYPMAPPKVRFLTKMyhpnidK 75
                799****************9988874443331 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (132 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       313  (0.0174578); expected 358.6 (0.02)
Passed bias filter:                      306  (0.0170673); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.40u 0.25s 00:00:00.65 Elapsed: 00:00:00.41
# Mc/sec: 969.79
//
Query:       KOO21174.1  [L=855]
Description: armadillo repeat-containing protein 3-like protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
      1e-29  103.7   0.0    1.7e-29  103.0   0.0    1.3  1  EDR1           Ethylene-responsive protein kinase Le-CTR1
  ------ inclusion threshold ------
       0.68   10.0   1.9        1.9    8.5   1.9    1.8  1  Mito_fiss_reg  Mitochondrial fission regulator


Domain annotation for each model (and alignments):
>> EDR1  Ethylene-responsive protein kinase Le-CTR1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  103.0   0.0   1.9e-33   1.7e-29       6     200 .]     604     792 ..     600     792 .. 0.93

  Alignments for each domain:
  == domain 1  score: 103.0 bits;  conditional E-value: 1.9e-33
        EDR1   6 sarfwvtgvLsyddkipdgFYdvigillteseeqgkipsleelqavepenssvevvlvdrekDseLkeleqtavklvselnst....kelvkklAelVa 100
                 +a++w +g++  + +++dgFY            ++ ++ le+l +    n+  ev+ vd + D+ L +l  +a++l ++ +++    ++l   lA++V+
  KOO21174.1 604 AAQLWYKGSIPLSLPTSDGFYGCTR--------DTAFLALEDLATS---NAGPEVLSVDAADDPPLAALITSARALLQTHAKKgatpAALASTLATFVC 691
                 578999***9999*******98766........57899****9976...99*************************9999988999999********** PP

        EDR1 101 dvmggsvsk.eeelllrweessselkaslnsvvlplGslkiGlcrhRAlLFKvLADsiglpcrlvkgskyc.gsddaasnlvkiedsreylVDLmgePG 197
                 ++mgg+v+  e e+ ++ ee++  l+  +++ v+plG++k G  rhRAlLFKvL+D++gl++    g+     + ++a n+  + + +e lVD+m++PG
  KOO21174.1 692 QQMGGAVEYlEYEYYTEPEEQLAALRVVSGTRVVPLGEVKAGATRHRALLFKVLCDKLGLQASYEMGACVRgAHAHHAWNTMIL-NRKEVLVDVMHAPG 789
                 *********99*****************************************************99988884667778888877.9************* PP

        EDR1 198 tLi 200
                 tL+
  KOO21174.1 790 TLH 792
                 *95 PP

>> Mito_fiss_reg  Mitochondrial fission regulator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.5   1.9   0.00022       1.9     158     190 ..     486     537 ..     454     557 .. 0.51

  Alignments for each domain:
  == domain 1  score: 8.5 bits;  conditional E-value: 0.00022
  Mito_fiss_reg 158 pdllepksssaspslepsss.........lppppppppppi..................p 190
                    p++  ++ +++        s         ++pppppppppi                  +
     KOO21174.1 486 PETAPEDAAPE--------SkeggeldeaAAPPPPPPPPPIaiaitllahalpsmqragC 537
                    11111111111........12344455545577777788855566666655555554443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (855 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       603  (0.0336327); expected 358.6 (0.02)
Passed bias filter:                      304  (0.0169558); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.67u 0.28s 00:00:00.95 Elapsed: 00:00:00.45
# Mc/sec: 5681.70
//
Query:       KOO21175.1  [L=217]
Description: fkbp-like peptidyl-prolyl cis-trans isomerase family protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.6e-15   56.5   0.0    3.7e-15   56.0   0.0    1.3  1  FKBP_C    FKBP-type peptidyl-prolyl cis-trans isomerase


Domain annotation for each model (and alignments):
>> FKBP_C  FKBP-type peptidyl-prolyl cis-trans isomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.0   0.0   2.1e-19   3.7e-15      10      93 ..      99     208 ..      84     209 .. 0.83

  Alignments for each domain:
  == domain 1  score: 56.0 bits;  conditional E-value: 2.1e-19
                 EEEEEEEEEE.....T.TSSEEEEHCCHTSEEEEETTSSSSCHHHHHHHTTSBTT-EEEEEEEGGGTTTTTTBCTTTB.TT.................. CS
      FKBP_C  10 tVtvhykgkl.....e.dgkvfdssrsrakplefkvGsgqvikGfeealegmkvGekrtltippelaYgekglaggvippn.................. 84 
                  Vtv y+g++     + +g  f+++   ++pl f+vG g vi++++ea++gm +G+ r++++p e +Y + g +   + p+                  
  KOO21175.1  99 GVTVGYQGRYfetrnKpKGGAFADDGFLQEPLAFTVGGGTVIPAIDEAVRGMALGGIRRIIVPEEIGYPADGWKR--VGPKpstfsgqraldfvlaskd 195
                 3799999999876654459999988679******************************************99955..3333357777788888888889 PP

                 ....SEEEEEEEE CS
      FKBP_C  85 ....atLvFeveL 93 
                     +tL+F+ +L
  KOO21175.1 196 smmdKTLMFDLKL 208
                 9999999999887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (217 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       219  (0.0122148); expected 358.6 (0.02)
Passed bias filter:                      186  (0.0103743); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.25s 00:00:00.65 Elapsed: 00:00:00.42
# Mc/sec: 1549.01
//
Query:       KOO21176.1  [L=173]
Description: hypothetical protein Ctob_000089 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
     0.0059   16.6   2.5         18    5.5   0.1    3.3  3  DUF2810      Protein of unknown function (DUF2810)
  ------ inclusion threshold ------
       0.14   11.3   0.2       0.18   11.0   0.2    1.1  1  HIGH_NTase1  HIGH Nucleotidyl Transferase
        2.3    9.2   6.0         69    4.5   2.0    2.9  3  DUF3720      Protein of unknown function (DUF3720)


Domain annotation for each model (and alignments):
>> DUF2810  Protein of unknown function (DUF2810)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.5   0.1     0.003        18      35      51 ..      51      67 ..      41      69 .. 0.70
   2 !    4.9   0.1    0.0044        26      35      51 ..      78      94 ..      74      96 .. 0.77
   3 !    4.9   0.1    0.0044        26      35      51 ..     105     121 ..     101     123 .. 0.77

  Alignments for each domain:
  == domain 1  score: 5.5 bits;  conditional E-value: 0.003
     DUF2810 35 mTalGrelglkevTGyA 51
                mT+lG +  ++   G+A
  KOO21176.1 51 MTKLGDDSEMTGFAGFA 67
                88888887666666665 PP

  == domain 2  score: 4.9 bits;  conditional E-value: 0.0044
     DUF2810 35 mTalGrelglkevTGyA 51
                mT+lG +  ++   G+A
  KOO21176.1 78 MTKLGDDSEMTGFAGFA 94
                99999998777777776 PP

  == domain 3  score: 4.9 bits;  conditional E-value: 0.0044
     DUF2810  35 mTalGrelglkevTGyA 51 
                 mT+lG +  ++   G+A
  KOO21176.1 105 MTKLGDDSEMTGFAGFA 121
                 99999998777777776 PP

>> HIGH_NTase1  HIGH Nucleotidyl Transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.2     3e-05      0.18      74     109 ..      20      55 ..      16      84 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 3e-05
  HIGH_NTase1  74 yavqsAelFAkgaVslLnalgvvdslvFGsEsgdie 109
                   av sA  F+k+ Vs+L+ lgv  s + GsE +++ 
   KOO21176.1  20 AAVVSAGAFSKAVVSVLSGLGVTRSTAVGSEMTKLG 55 
                  7999***************************87654 PP

>> DUF3720  Protein of unknown function (DUF3720)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.7   0.2      0.02   1.2e+02      24      51 ..      45      72 ..      36      76 .. 0.81
   2 ?    3.3   0.2     0.028   1.6e+02      25      51 ..      73      99 ..      69     101 .. 0.81
   3 ?    4.5   2.0     0.012        69      23      56 ..      98     131 ..      82     137 .. 0.78

  Alignments for each domain:
  == domain 1  score: 3.7 bits;  conditional E-value: 0.02
     DUF3720 24 seesspdnklgdntegggapGaggagva 51
                ++ +s+  klgd+ e +g +G + ag a
  KOO21176.1 45 TAVGSEMTKLGDDSEMTGFAGFAAAGSA 72
                56789999*****999999888877654 PP

  == domain 2  score: 3.3 bits;  conditional E-value: 0.028
     DUF3720 25 eesspdnklgdntegggapGaggagva 51
                e +s+  klgd+ e +g +G + ag a
  KOO21176.1 73 EVGSEMTKLGDDSEMTGFAGFAAAGSA 99
                6789999*****999999998877754 PP

  == domain 3  score: 4.5 bits;  conditional E-value: 0.012
     DUF3720  23 kseesspdnklgdntegggapGaggagvagqpaa 56 
                 + e +s+  klgd+ e +g +G + ag a + ++
  KOO21176.1  98 SAEVGSEMTKLGDDSEMTGFAGFAAAGSAEEGSE 131
                 56789999**********9999988888776443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (173 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       310  (0.0172904); expected 358.6 (0.02)
Passed bias filter:                      157  (0.00875676); expected 358.6 (0.02)
Passed Vit filter:                        12  (0.000669307); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.39u 0.25s 00:00:00.64 Elapsed: 00:00:00.41
# Mc/sec: 1272.04
//
Query:       KOO21177.1  [L=649]
Description: 5 -3 exoribonuclease 3-like protein, partial [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   8.1e-119  397.5   0.0    7.8e-82  275.6   0.0    2.0  2  XRN_M     Xrn1 helical domain


Domain annotation for each model (and alignments):
>> XRN_M  Xrn1 helical domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  120.0   0.0   7.1e-39   1.3e-34       2      99 ..      89     186 ..      88     199 .. 0.89
   2 !  275.6   0.0   4.4e-86   7.8e-82     156     442 ..     321     617 ..     282     618 .. 0.89

  Alignments for each domain:
  == domain 1  score: 120.0 bits;  conditional E-value: 7.1e-39
       XRN_M   2 fdleriiDDfvFlcFFvGNDFLPhlPsLeiregaidlllkvYkkelkklggyltdngevkldrveklvslvgkveekifrkrkeredrkekklakeee 99 
                 fdler+iDDfvFlcFFvGNDFLPh+P+Leir+gaid l+  Yk+ l++lggy+ d g v+l r+e ++ +v++ ee++f++ ++re+ +++ +a +++
  KOO21177.1  89 FDLERVIDDFVFLCFFVGNDFLPHIPALEIRDGAIDMLIYSYKALLPSLGGYISDAGRVHLPRAEAVLREVAQFEEEVFERSRRREEGRARAQAARTM 186
                 79*****************************************************************************8766666555555444433 PP

  == domain 2  score: 275.6 bits;  conditional E-value: 4.4e-86
       XRN_M 156 eseeeeeeeDkvrLgeeGykeRYYkekfevsseeieqrrevvqkYveGLcWvlrYYyqGvaSWkWfyPyhyaPFaSDlknladl.kikFekgspfkple 253
                  +e   ++ D vr ge+G+keRYY++k++v++ + + +r vv +Yv+GLcW+l YYyqGv  W WfyP+hyaP aSD+++l+++   +F +g pf+p++
  KOO21177.1 321 LEEAAASQPDVVRYGESGWKERYYAHKLQVHKGDEAMKRYVVGCYVQGLCWTLMYYYQGVQDWGWFYPFHYAPCASDIIGLHEFaGGQFTLGAPFTPFQ 419
                 455566778***************************************************************************6689*********** PP

       XRN_M 254 qLmavlPaaskkalPkayqkLmtdpdSpiidlypedfeidlnGkrvaWqgvaklPfidekrLlealakleeeLteeEkkRNtrksdvlfvsktskkaea 352
                 qLmav+P++s +alP++y++Lm  p Spiid+yp df++dlnGk++ Wq++a+lPfid+ rL + la+l+++L++eE++RN+ + ++lf +++s++ + 
  KOO21177.1 420 QLMAVFPPSSGHALPESYRTLMVHPASPIIDFYPIDFRMDLNGKKFFWQAIALLPFIDAARLRASLAPLDTTLEAEEARRNSFGAELLFARASSPLGAL 518
                 ************************************************************************************************996 PP

       XRN_M 353 llaklsekekdee....klkidek.lseglngslala.e.eavvekklssplk....elediednkvlcvkyelPkkddyvhiaellpgvvlpekvlke 440
                 ++a + ++  +++    ++ +d +  + g +g l+ a +    +++ l +p+     +l  +++ +v  ++y  P +   +h+++llp   lp+ vl++
  KOO21177.1 519 IVAATAHHGAASAgapcRAPLDISpYVPGFGGALSWAgDrVGSAGSPLPAPIGgdayGLAPLKESTVAGAEYTPPAY--VTHVPRLLPTIHLPPIVLQP 615
                 6666666554333111144555545789******99944344567778888878888999*****************..78****************** PP

       XRN_M 441 eD 442
                 +D
  KOO21177.1 616 HD 617
                 99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (649 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       403  (0.0224776); expected 358.6 (0.02)
Passed bias filter:                      340  (0.0189637); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.57u 0.23s 00:00:00.80 Elapsed: 00:00:00.42
# Mc/sec: 4679.55
//
Query:       KOO21178.1  [L=193]
Description: s-adenosylmethionine-dependent [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    0.00013   22.6   0.0    0.00019   22.1   0.0    1.2  1  Methyltransf_25  Methyltransferase domain
     0.0025   18.4   0.0     0.0034   18.0   0.0    1.2  1  Methyltransf_11  Methyltransferase domain
  ------ inclusion threshold ------
      0.054   14.2   0.0      0.077   13.7   0.0    1.2  1  Methyltransf_12  Methyltransferase domain
      0.073   12.7   0.0      0.095   12.3   0.0    1.1  1  NodS             Nodulation protein S (NodS)


Domain annotation for each model (and alignments):
>> Methyltransf_25  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.1   0.0   4.2e-08   0.00019       1      76 [.      98     171 ..      98     187 .. 0.85

  Alignments for each domain:
  == domain 1  score: 22.1 bits;  conditional E-value: 4.2e-08
                      EEEET-TTSHHHHHHHCTSTSSEEEEEESSHHHHHHHHHHHHHTTT.TEEEEESBCCGBSSSTTTEEEEEEESTGGG CS
  Methyltransf_25   1 vLdlGcGtGrltlalakrlgkakvtgvDiseemleaareraeeegl.nvefvqgdaedlpfedgsfDlvvssgalhh 76 
                      +L +G G+  l ++l +  g +  ++ Dis++ + +++er ++  +  +++ + da+ +p + ++fD+++  g++  
       KOO21178.1  98 ILHVGNGNSALPERLWAC-GYKWQHASDISPTVISRMAERTRD--CeGLHWAVEDATCMPHAMETFDAIIDKGTYDA 171
                      8999***********988.67888*****************76..348*********************98766554 PP

>> Methyltransf_11  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.0   0.0   7.6e-07    0.0034       1      74 [.      99     172 ..      99     187 .. 0.79

  Alignments for each domain:
  == domain 1  score: 18.0 bits;  conditional E-value: 7.6e-07
                      EEET-TTSHHHHHHHHTT.SEEEEEES-HHHHHHHHHHCCHHT-EEEETTEECCCTSS-TT-EEEEEEES-CCC- CS
  Methyltransf_11   1 LdvGcGtGrlaealakrg.arvvgvDlskemlklakekaseeglkvefvvadaeklpfednsfDlvvssevlhhv 74 
                      L+vG G+ +l e l   g +   + D+s++++ +  e++++ +  + + v+da+ +p + ++fD+++ + + + +
       KOO21178.1  99 LHVGNGNSALPERLWACGyKWQHASDISPTVISRMAERTRDCEG-LHWAVEDATCMPHAMETFDAIIDKGTYDAL 172
                      6789999998888886777778999*******777677666663.899******************998877766 PP

>> Methyltransf_12  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.0   1.7e-05     0.077       2      79 ..     100     172 ..      99     185 .. 0.79

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 1.7e-05
  Methyltransf_12   2 eiGcGtGsllralleklpdieytgvDispsaiedakeklakrennnnnnvelealdlldldggssfDlvvasnvlhhl 79 
                      ++G G+++l ++l +    +  +++Disp +i + +e++++ e++++++ + +    + +    +fD+++  ++  +l
       KOO21178.1 100 HVGNGNSALPERLWAC-GYKWQHASDISPTVISRMAERTRDCEGLHWAVEDATCMPHAME----TFDAIIDKGTYDAL 172
                      5666666666666666.4444589**************************9999996544....99*99988887776 PP

>> NodS  Nodulation protein S (NodS)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   2.1e-05     0.095      45     111 ..      96     164 ..      70     169 .. 0.86

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 2.1e-05
        NodS  45 adalevGcaaGalterlapyc.krltvvdvveeaiararervkesshiswivsdvqqf.stdekfdliv 111
                 a +l vG    al erl     k     d+ +  i+r  er+++   + w v d + +  + e fd i+
  KOO21178.1  96 ALILHVGNGNSALPERLWACGyKWQHASDISPTVISRMAERTRDCEGLHWAVEDATCMpHAMETFDAII 164
                 55789999999****9966651556788**************************9888356799**998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (193 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       304  (0.0169558); expected 358.6 (0.02)
Passed bias filter:                      268  (0.0149478); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.41u 0.23s 00:00:00.64 Elapsed: 00:00:00.39
# Mc/sec: 1489.72
//
Query:       KOO21179.1  [L=366]
Description: hypothetical protein Ctob_000085 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    8.3e-06   25.0   0.5     0.0012   18.2   0.0    2.7  3  EF-hand_1  EF hand
    2.8e-05   24.5   0.0    5.1e-05   23.6   0.0    1.4  1  EF-hand_7  EF-hand domain pair
      3e-05   23.6   0.0     0.0057   16.5   0.0    2.4  2  EF-hand_6  EF-hand domain
    0.00052   19.4   0.0     0.0042   16.5   0.0    2.4  2  EF-hand_5  EF hand
  ------ inclusion threshold ------
       0.12   12.2   0.4        3.8    7.4   0.2    2.6  3  EF-hand_8  EF-hand domain pair


Domain annotation for each model (and alignments):
>> EF-hand_1  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.2   0.0   3.4e-07    0.0012       2      27 ..     170     195 ..     169     197 .. 0.91
   2 ?   -3.8   0.3       3.7   1.3e+04       2      10 ..     207     215 ..     207     216 .. 0.79
   3 !    4.6   0.0    0.0076        27      12      28 ..     222     238 ..     221     239 .. 0.88

  Alignments for each domain:
  == domain 1  score: 18.2 bits;  conditional E-value: 3.4e-07
                 HHHHHHHHTTTSSSEEEHHHHHHHHH CS
   EF-hand_1   2 lkeiFrefDkDgdGkIdfeEfkellk 27 
                 l+ +F+ +D++++G Id  E++++++
  KOO21179.1 170 LEAAFATVDTNQSGSIDAAEMRAYIR 195
                 689*******************9876 PP

  == domain 2  score: -3.8 bits;  conditional E-value: 3.7
                 HHHHHHHHT CS
   EF-hand_1   2 lkeiFrefD 10 
                 ++++++ +D
  KOO21179.1 207 VDDMMMAAD 215
                 588999888 PP

  == domain 3  score: 4.6 bits;  conditional E-value: 0.0076
                 TSSSEEEHHHHHHHHHH CS
   EF-hand_1  12 DgdGkIdfeEfkellkk 28 
                 ++ G I  +Efk ++++
  KOO21179.1 222 NKEGEIGVSEFKLIMRA 238
                 7779***********86 PP

>> EF-hand_7  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.6   0.0   1.4e-08   5.1e-05       4      71 .]     170     237 ..     167     237 .. 0.79

  Alignments for each domain:
  == domain 1  score: 23.6 bits;  conditional E-value: 1.4e-08
   EF-hand_7   4 lkeaFkelDtdgdgyldkeellrllrkifqgagegsklsdee...lellfkefDtdkdGvisfdEFlklyr 71 
                 l+ aF   Dt+++g++d +e++ ++r  +++ g ++k+ d+     ++++     +k G+i  +EF+ ++r
  KOO21179.1 170 LEAAFATVDTNQSGSIDAAEMRAYIRGVYDK-GLDDKTVDDMmmaADAMIWL--RNKEGEIGVSEFKLIMR 237
                 6789**********************98887.66666555444445555555..8999********98775 PP

>> EF-hand_6  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.0   1.6e-06    0.0057       2      27 ..     170     195 ..     169     201 .. 0.92
   2 ?    4.6   0.0      0.01        37      12      29 ..     222     238 ..     221     246 .. 0.89

  Alignments for each domain:
  == domain 1  score: 16.5 bits;  conditional E-value: 1.6e-06
   EF-hand_6   2 lreaFklfDkdgdGkidaeElrkalr 27 
                 l++aF   D++ +G+ida+E+r+ +r
  KOO21179.1 170 LEAAFATVDTNQSGSIDAAEMRAYIR 195
                 6789*******************998 PP

  == domain 2  score: 4.6 bits;  conditional E-value: 0.01
   EF-hand_6  12 dgdGkidaeElrkalrka 29 
                 ++ G+i  +E++ ++r a
  KOO21179.1 222 NKEGEIGVSEFKLIMR-A 238
                 899************9.4 PP

>> EF-hand_5  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.0   1.2e-06    0.0042       1      22 [.     170     191 ..     170     194 .. 0.91
   2 ?   -0.4   0.1      0.25   9.1e+02      11      24 ..     222     235 ..     221     236 .. 0.82

  Alignments for each domain:
  == domain 1  score: 16.5 bits;  conditional E-value: 1.2e-06
                 HHHHHHHH-SS-SSCE-HHHHH CS
   EF-hand_5   1 lkdtFqaiDlNgDGkIskeELk 22 
                 l+++F  +D+N++G I++ E +
  KOO21179.1 170 LEAAFATVDTNQSGSIDAAEMR 191
                 6789****************97 PP

  == domain 2  score: -0.4 bits;  conditional E-value: 0.25
                 S-SSCE-HHHHHHH CS
   EF-hand_5  11 NgDGkIskeELktl 24 
                 N+ G I ++E+k +
  KOO21179.1 222 NKEGEIGVSEFKLI 235
                 77799******975 PP

>> EF-hand_8  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.7   0.0     0.015        55      29      47 ..     171     189 ..     166     194 .. 0.81
   2 ?    7.4   0.2    0.0011       3.8       2      36 ..     182     215 ..     181     217 .. 0.85
   3 ?    1.8   0.0     0.061   2.2e+02       3      17 ..     225     239 ..     223     250 .. 0.83

  Alignments for each domain:
  == domain 1  score: 3.7 bits;  conditional E-value: 0.015
   EF-hand_8  29 dilfrefDtdgdGkisfeE 47 
                 ++ f ++Dt+++G i+  E
  KOO21179.1 171 EAAFATVDTNQSGSIDAAE 189
                 5668899********9877 PP

  == domain 2  score: 7.4 bits;  conditional E-value: 0.0011
   EF-hand_8   2 kgkItreelrrilrilglkk.glseeevdilfrefD 36 
                 +g+I+ +e+r  +r  g  + gl ++ vd++++++D
  KOO21179.1 182 SGSIDAAEMRAYIR--GVYDkGLDDKTVDDMMMAAD 215
                 79*********777..444468************99 PP

  == domain 3  score: 1.8 bits;  conditional E-value: 0.061
   EF-hand_8   3 gkItreelrrilril 17 
                 g+I + e++ i+r+ 
  KOO21179.1 225 GEIGVSEFKLIMRAG 239
                 89**********874 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (366 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       360  (0.0200792); expected 358.6 (0.02)
Passed bias filter:                      215  (0.0119917); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.46u 0.26s 00:00:00.72 Elapsed: 00:00:00.43
# Mc/sec: 2568.00
//
Query:       KOO21180.1  [L=171]
Description: RNA-binding protein ews [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      1e-11   44.4   0.0    3.1e-09   36.5   0.0    2.3  1  RRM_1     RNA recognition motif. (a.k.a. RRM, RBD, or RNP dom
  ------ inclusion threshold ------
       0.06   13.1   0.2       0.11   12.2   0.2    1.4  1  UVR       UvrB/uvrC motif


Domain annotation for each model (and alignments):
>> RRM_1  RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.5   0.0   3.5e-13   3.1e-09       1      65 [.      66     142 ..      66     144 .. 0.89

  Alignments for each domain:
  == domain 1  score: 36.5 bits;  conditional E-value: 3.5e-13
                 EEEESETTTSSHHHHHHHHHTTSCEEE...........EEEEEE.TTTSEEEEEEEEESSHHHHHHHHHHHTTEEET CS
       RRM_1   1 lfVgnLppdvteeeLkelFskfGpiks...........iklvrd.etgkskgfafVeFeskedAekAlealngkklg 65 
                 ++V+++p d+t eeL e+F+k+G ik+           i +++d +tg++kg + + ++ +e A++A++ ++g+k++
  KOO21180.1  66 IYVSGIPMDATLEELAEWFGKIGTIKKskknfnqgepvIHIYKDkRTGRPKGDCTISYDEPETATAAVKWFDGTKFE 142
                 8************************8745555555555679999******************************997 PP

>> UVR  UvrB/uvrC motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.2   1.3e-05      0.11      19      32 ..       4      17 ..       2      17 .. 0.90

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 1.3e-05
         UVR 19 dFEkAAklRDqina 32
                dFE A k+RDq++a
  KOO21180.1  4 DFEGADKIRDQLRA 17
                9**********986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (171 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       305  (0.0170115); expected 358.6 (0.02)
Passed bias filter:                      272  (0.015171); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.38u 0.23s 00:00:00.61 Elapsed: 00:00:00.39
# Mc/sec: 1310.02
//
Query:       KOO21181.1  [L=484]
Description: iq and ubiquitin-like domain-containing [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    0.00029   20.5   0.0    0.00088   19.0   0.0    1.8  1  ubiquitin    Ubiquitin family
     0.0034   17.8   0.0     0.0081   16.6   0.0    1.7  1  Ubiquitin_2  Ubiquitin-like domain
  ------ inclusion threshold ------
        3.9    7.9   6.3        6.8    7.1   6.3    1.3  1  AAA_23       AAA domain


Domain annotation for each model (and alignments):
>> ubiquitin  Ubiquitin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.0   0.0   1.5e-07   0.00088      10      57 ..      23      69 ..      14      83 .. 0.78

  Alignments for each domain:
  == domain 1  score: 19.0 bits;  conditional E-value: 1.5e-07
                EEEEEEETTSBHHHHHHHHHHHHTSSGGGEEEEETTEEE-TTSBHGGH CS
   ubiquitin 10 kitleveesdtveelKekiaekegipaeqqrLiysGkvLedertleey 57
                +++ +++   t+ elK++i+e  +ipa +++L ++G++++    l++y
  KOO21181.1 23 SHSRRFALRLTLVELKAQIEEDLRIPAASMKLSFKGQEMRSA-LLSDY 69
                5566677778999*************************8753.46666 PP

>> Ubiquitin_2  Ubiquitin-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   0.0   1.4e-06    0.0081      14      54 ..      22      60 ..      13      93 .. 0.74

  Alignments for each domain:
  == domain 1  score: 16.6 bits;  conditional E-value: 1.4e-06
                 SEEEEEEETTSBHHHHHHHHHHHH---TTCEEEEEE.-SSS CS
  Ubiquitin_2 14 vsserrfsksltieelKekLelitGtspasmrLqlyddkkd 54
                 +s+ rrf + lt+ elK+++e    +++asm+L+++   ++
   KOO21181.1 22 FSHSRRFALRLTLVELKAQIEEDLRIPAASMKLSFKG--QE 60
                 6899******************************982..22 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.1   6.3    0.0011       6.8     114     193 ..     269     351 ..     235     355 .. 0.80

  Alignments for each domain:
  == domain 1  score: 7.1 bits;  conditional E-value: 0.0011
      AAA_23 114 ideleqfisellgskki...ilnlilflgqerfeefelkdkkerleelekeleeledekkllekleqekekekeleeleeele 193
                 i+ ++++ ++  + ++i   +l+   ++   r +  e++++ e+ e+l++ l ++++  + +++l q+ + e++ + ++++l+
  KOO21181.1 269 IEIQRRMHPHTHEDFEIlynELEAWRLHETARIKAAEEMNEVEKAEALQQLLLKEQKLLQTIDRLRQQADSENRDKRIRSTLQ 351
                 4444445554333333344499999999999*99999******************************************9998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (484 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1202  (0.0670422); expected 358.6 (0.02)
Passed bias filter:                      474  (0.0264376); expected 358.6 (0.02)
Passed Vit filter:                        51  (0.00284455); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.54u 0.26s 00:00:00.80 Elapsed: 00:00:00.41
# Mc/sec: 3566.44
//
Query:       KOO21182.1  [L=352]
Description: camp-dependent protein kinase type i-beta regulatory subunit [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
      7e-23   80.5   0.0    6.6e-12   45.3   0.0    2.3  2  cNMP_binding  Cyclic nucleotide-binding domain


Domain annotation for each model (and alignments):
>> cNMP_binding  Cyclic nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.3   0.0   3.7e-16   6.6e-12       2      84 ..     104     183 ..     103     186 .. 0.90
   2 !   33.1   0.0   2.4e-12   4.4e-08       2      87 ..     227     325 ..     226     327 .. 0.86

  Alignments for each domain:
  == domain 1  score: 45.3 bits;  conditional E-value: 3.7e-16
                   EEE-TT-EEE-TTSB-SEEEEEEES-EEEEEEETTS.EEEEEEE-TTEEESHHHHH.HTS--SSEEEESSTEEEEEEEHHHHHH CS
  cNMP_binding   2 rsfkagevifrqGdpadslyivlsGevrvyrlsedgkevvlavlgpGdlfGelall.tgeprtatvvAltdsellalprddfle 84 
                   r f++ ++i+r+G + +++yi+l G+vr+  ++ +g +   a l+ G+ fGe al+     r  ++vA tds +l l+++d++ 
    KOO21182.1 104 RLFPRYTTIVREGSESNNFYILLHGQVRMH-STVHGTS---ALLTVGSSFGEDALIvSRVMREESAVAETDSYVLILSAADMHG 183
                   6789999**********************6.9****55...8**************64455******************99975 PP

  == domain 2  score: 33.1 bits;  conditional E-value: 2.4e-12
                   EEE-TT-EEE-TTSB-...SEEEEEEES-EEEE.EEETTS.EEEEE...EE-TTEEESHHHHH......HTS--SSEEEESSTEEEEEEEHHHHHHH CS
  cNMP_binding   2 rsfkagevifrqGdpa...dslyivlsGevrvy.rlsedgkevvla...vlgpGdlfGelall......tgeprtatvvAltdsellalprddflel 85 
                   +++  g ++f +Gd++   + ++iv +G+v++  r +++g e  ++      +G +fGe al       +  pr++t+v  +++++++++ ++f+++
    KOO21182.1 227 VEYTSGATVFAEGDEPspfTAMFIVCEGRVSLHkRDAASGGEANIGwrtPQDEGPWFGEGALAnhadggRPRPRPCTAVCTEHTKCVVVRVAHFDRF 323
                   7899*********886344699**********86888999998888543338889***********9876778***********************9 PP

                   HH CS
  cNMP_binding  86 lq 87 
                   l+
    KOO21182.1 324 LE 325
                   97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (352 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       325  (0.0181271); expected 358.6 (0.02)
Passed bias filter:                      293  (0.0163422); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.23s 00:00:00.66 Elapsed: 00:00:00.38
# Mc/sec: 2765.48
//
Query:       KOO21183.1  [L=784]
Description: 1-hydroxy-2-methyl-2-(E)-butenyl-4-diphosphate synthase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   3.4e-147  490.1   0.0   6.3e-147  489.2   0.0    1.4  1  GcpE      GcpE protein
  ------ inclusion threshold ------
       0.19   11.3   0.9        1.1    8.9   0.1    2.2  2  Sgf11     Sgf11 (transcriptional regulation protein)


Domain annotation for each model (and alignments):
>> GcpE  GcpE protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  489.2   0.0    7e-151  6.3e-147       1     351 []     122     767 ..     122     767 .. 1.00

  Alignments for each domain:
  == domain 1  score: 489.2 bits;  conditional E-value: 7e-151
                 .--EEETTEEESTTS--EEEEE--S-TT-HHHHHHHHHHHHHCT-SEEEEEE-SHHHHHHHHHHHHHHHHTT-SS-EEEEE-SSCHHHHHHHHCC-SEE CS
        GcpE   1 trevkvgkvkiGgeapiavqsMtntdtadveatvkqikrlaeaGaelvRvtvqdeeeaealkeikeklkkkglkvplvaDihfnpklaleaaeagvdkv 99 
                 tr+v++g +k+G+e++++ q+M++t t+dve t++q+ r+a+ G +lvRvtv ++++a a+k+i+e l+++g+++pl aD+hf pk+al++a+a v+k+
  KOO21183.1 122 TRTVECGPIKFGSEHRLVRQTMATTLTSDVEGTIEQVIRCADEGFDLVRVTVVGMKDAIACKKIREGLDARGYNIPLAADMHFAPKVALAVADA-VEKI 219
                 799*******************************************************************************************.**** PP

                 EE-TTTSSSTTHH...................HHHHHHHHHHHHHHT-EEEEEEEGGG--HHHHHHHCCTHHHHHHHHHHHHHHHHHTT--GEEEEEE- CS
        GcpE 100 RiNPGnigdgkkk...................eekvkelveaakekgtaiRiGvNhGSLskrllskygdtpealvesalefleilekldfkdiviSlKa 179
                 RiNPGn++dg+k+                    e +++lv+++ke ++++RiG+NhGSLs r+ls ygdtp+++vesa+ef++i+++ldf+++v+S+Ka
  KOO21183.1 220 RINPGNFVDGRKTfetmvyetdedyfkeraffVEAFTPLVKKCKELNRCMRIGTNHGSLSARVLSFYGDTPRGMVESAIEFADICRSLDFHNFVFSMKA 318
                 ************9************************************************************************************** PP

                 SSHHHHHHHHHHHHHH--.....S-EEE--TT-ECHHHHHHHHHHHHHHHHHTT--SEE---ECS-CCHHHHHHH........................ CS
        GcpE 180 snvvvmveayrllaeeld.....yplHlGvTEAGegedgriksavgigaLLaegiGdTiRvSLtedpeeEvkvak........................ 249
                 sn+ vmv+ayrlla+e+d     yplHlGvTEAGegedgr+ksa+gigaLLa+g+GdTiRvSLtedpe E  +++                        
  KOO21183.1 319 SNPLVMVQAYRLLAAEMDrlgwdYPLHLGVTEAGEGEDGRMKSAIGIGALLADGLGDTIRVSLTEDPEFEYAPCNrlaeiadakllpsalatqravppy 417
                 *************************************************************************************************** PP

                 ................................................................................................... CS
        GcpE 250 ................................................................................................... 249
                                                                                                                    
  KOO21183.1 418 vdirditsfarrsgrlpaqkegdtfdyrgllnrdgsvlsavtakelrepntlynalgcktvvglpfkdiatsdtlmlreppalddeiarrtlkrlmdva 516
                 *************************************************************************************************** PP

                 ................................................................................................... CS
        GcpE 250 ................................................................................................... 249
                                                                                                                    
  KOO21183.1 517 vlpvvpadalakapiegavalmsldeaasgakkpacasrvvlsvrgdesaelmnkikgiehafvlldppptlsrlhaarrlfslfgalnidsavihhfr 615
                 *************************************************************************************************** PP

                 .................................................HHHHHTTS--SS-EEEE----TTS-CHHHHHHHHHHHHCCCHHCG-EEEE CS
        GcpE 250 .................................................eiLqalrlrksktelisCPsCgRtlfdlqelveeveealehlkkglkiav 299
                                                                   +Lq +r+r+ kte++sCPsCgRtlf+lqe++++++e+++hl  g+++a+
  KOO21183.1 616 pvpsdsselalqmgtevggllvdglgdgvlvepqtpgsfelsmlrtvsfGLLQGSRMRSVKTEFVSCPSCGRTLFNLQEVTAQISERTGHL-PGVTVAI 713
                 *******************************************************************************************.******* PP

                 ESSTCCHHHHCCCSSEEEEEBT.TCEEEEETTEEE.ECEESSCHHHHHHHHHHH CS
        GcpE 300 mGCiVNGpgEaadAdlGivggk.gkvslykkkevv.kkvpeeeavdellelikk 351
                 mGCiVNGpgE+adAd+G+vgg+ gkv+ly++kevv + v++e a+d+l+elik+
  KOO21183.1 714 MGCIVNGPGEMADADFGYVGGApGKVDLYVGKEVVrRGVDNEVACDQLIELIKE 767
                 *******************9999************99***************85 PP

>> Sgf11  Sgf11 (transcriptional regulation protein)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.4   0.1     0.054   4.8e+02      23      32 ..     265     274 ..     265     275 .. 0.85
   2 ?    8.9   0.1   0.00012       1.1       1      13 [.     676     688 ..     676     689 .. 0.89

  Alignments for each domain:
  == domain 1  score: 0.4 bits;  conditional E-value: 0.054
                 HHHHCHHXXX CS
       Sgf11  23 LekClgrgrr 32 
                 L++C+ +g +
  KOO21183.1 265 LNRCMRIGTN 274
                 89***99975 PP

  == domain 2  score: 8.9 bits;  conditional E-value: 0.00012
                 GC-EEE-TTTSSE CS
       Sgf11   1 kseyvtCpnCgRq 13 
                 k+e+v+Cp CgR+
  KOO21183.1 676 KTEFVSCPSCGRT 688
                 589*********7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (784 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       427  (0.0238162); expected 358.6 (0.02)
Passed bias filter:                      408  (0.0227564); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.60u 0.26s 00:00:00.86 Elapsed: 00:00:00.41
# Mc/sec: 5764.90
//
Query:       KOO21184.1  [L=304]
Description: chloroplast inner membrane import protein tic22 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.3e-11   43.0   0.0    8.8e-11   41.6   0.0    1.6  1  Tic22     Tic22-like family
     0.0078   16.4   0.6      0.016   15.4   0.6    1.5  1  RhlB      ATP-dependent RNA helicase RhlB


Domain annotation for each model (and alignments):
>> Tic22  Tic22-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.6   0.0   9.8e-15   8.8e-11      47     236 ..      35     234 ..       6     243 .. 0.83

  Alignments for each domain:
  == domain 1  score: 41.6 bits;  conditional E-value: 9.8e-15
       Tic22  47 ataLssdevaktLaGvpvytvsnsnnefvlvsdpdgeksigllcfrqedAeafLaqvkkrkrelrsqakvvpvaLdkvvkl.................. 127
                 a++ +sd v ++L+ vpv+ v+ns++++ l    ++++  g +++  ++A a L+++k  ++    +a++  v+L+ v+                    
  KOO21184.1  35 AAGAPSDDVLRKLSRVPVFVVTNSKDAPYLTEVDEQSRRSGFFYLGPQEALAALNDIKAFDP----KASLSVVSLESVYFDisksaveaasapqptagt 129
                 34789*************************9988899999*****************77665....577888999999864489999999999988776 PP

       Tic22 128 kvegiaFrflPdpvqvknAlelkasevkdgfdGvPvFqsrlLvvkkenkryiPvffrkediekelsrvsreqrkladslkiqvgslEdvlkkletsens 226
                  ++   Fr+   p q  +Al  ++++     d vP++   +L++  +    +P ffr +d++++ +  +++ +kla+   + v++l+ ++++l+  ++s
  KOO21184.1 130 STDLRLFRL--RPLQDSAALADREKDATLKPDDVPLYYDVSLLLTVDGTAQRPYFFRLQDLKRTYE--QQSGKKLANLPSLSVTTLDALVQSLQAGDKS 224
                 566666776..56899999999999999999*********************************99..45556666777799*************9998 PP

       Tic22 227 gWdDlifipP 236
                   +   +++ 
  KOO21184.1 225 AMQPSALLVA 234
                 8766555555 PP

>> RhlB  ATP-dependent RNA helicase RhlB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.6   1.8e-06     0.016      45      93 ..     235     283 ..     199     292 .. 0.81

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 1.8e-06
        RhlB  45 areqreadearrgggksgpggasrsgsgggrresagadgkprpprrkpr 93 
                 a e  +  e+   g  s  gga   g+ ggr ++ ga+ +pr     p+
  KOO21184.1 235 ASEAAAVVERMSAGSTSSLGGAQGDGAQGGRVQGVGAEAQPRGLPEAPK 283
                 5566666777888999999***********************7666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (304 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       401  (0.022366); expected 358.6 (0.02)
Passed bias filter:                      328  (0.0182944); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.45u 0.28s 00:00:00.73 Elapsed: 00:00:00.44
# Mc/sec: 2090.70
//
Query:       KOO21185.1  [L=126]
Description: hypothetical protein Ctob_005946 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (126 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       230  (0.0128284); expected 358.6 (0.02)
Passed bias filter:                      202  (0.0112667); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.23s 00:00:00.57 Elapsed: 00:00:00.37
# Mc/sec: 1017.07
//
Query:       KOO21186.1  [L=433]
Description: DNA repair protein rad51-like 3 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.4e-30  105.6   0.1    4.8e-29  101.4   0.1    2.0  1  Rad51     Rad51
    1.4e-09   37.9   0.1    2.5e-09   37.0   0.1    1.4  1  AAA_25    AAA domain
     0.0002   20.9   0.1       0.04   13.4   0.0    2.1  2  RecA      recA bacterial DNA recombination protein
    0.00058   19.3   0.0     0.0015   17.9   0.0    1.6  1  DnaB_C    DnaB-like helicase C terminal domain
     0.0026   17.1   0.1     0.0097   15.3   0.0    1.8  2  ATPase    KaiC
  ------ inclusion threshold ------
      0.038   14.4   0.2      0.079   13.3   0.2    1.6  1  AAA_16    AAA ATPase domain
      0.077   13.2   0.0       0.14   12.3   0.0    1.5  1  AAA_33    AAA domain
       0.17   11.9   0.1       0.72    9.9   0.0    1.9  2  AAA_5     AAA domain (dynein-related subfamily)


Domain annotation for each model (and alignments):
>> Rad51  Rad51
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  101.4   0.1   2.1e-32   4.8e-29      12     254 ..      81     349 ..      71     350 .. 0.84

  Alignments for each domain:
  == domain 1  score: 101.4 bits;  conditional E-value: 2.1e-32
                 HHHSS-EE--S-HHHHHHHTSSEESSSEEEEEESTTSSHHHHHHHHHHHTTS-TTTS--SSEEEEEESSS---GGGGHHHH.................. CS
       Rad51  12 krsellqlttGskklDelLgGGietgsiteifGefrsGktqlchtlcvtvqlplelgGgegkavyidtegtfrperlveia.................. 92 
                 + +   +++t + +lD+lL GG++ ++++e  G  + Gktql+++l+++vqlp  l+G +g a+yidteg+f + r +++a                  
  KOO21186.1  81 EERAEQRISTCAGELDRLLAGGVQLQKLSEFSGVPGVGKTQLAMQLALAVQLPEALNGLDGDAIYIDTEGSFFAPRCLAMAesllsqiqdeasrhgspe 179
                 44455689************************************************************************************9999998 PP

                 ......HHTT--HHHHGGGEEEEE--STTHHHHHHHHTHHHH...HHS-.......EEEEEEETTTGGGCH-------THHHHHHHHHHHHHHHHHHHH CS
       Rad51  93 ......erykldkeevlenvayaRaytiehqeellqqaaall...aedk.......fallivDsvtalyRtdfsgrgelakRqqklgkllrtLrklade 175
                          k   +++l ++ y R++   +q  + + +++ +   a++        ++l++vDs++ + R+        akR q +g++++ L++ a +
  KOO21186.1 180 qraevgALVKSGARAMLGRIHYYRVHDLAEQLAVCHVLPEAIgeiARNApgrpgrcVRLVVVDSIAFHVRAS--TELTYAKRLQLVGQMAQLLSHAARR 276
                 555443333556788999*********9888776665555441115442233333489*******9988885..556789******************* PP

                 H--EEEEEEE-------.------------HHHHHHHH-SEEEEEEE-STTEEEEEEES-SSS-S-EEEEEEETTEEE- CS
       Rad51 176 fevavvitnqvvaqvdgqaalfsadpkkPigGlvlahasttRlalrkgkgeeRivkvvdsPnlpeleavfaigeeGied 254
                    avv+ nqv+ +v+    +  +    P +G+ +ah+  + ++l   +++ R++ + +  +    ea+fa++ +Gi +
  KOO21186.1 277 SPCAVVLINQVTTRVNE---VLGTSGLVPALGEAWAHMCNVQVSLEW-RDDVRLAALSKGGE--PGEAQFAVTADGIRS 349
                 ***************99...8888999******************75.78899998877655..457889999999976 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.0   0.1   1.1e-12   2.5e-09      22     189 ..      95     287 ..      74     290 .. 0.82

  Alignments for each domain:
  == domain 1  score: 37.0 bits;  conditional E-value: 1.1e-12
      AAA_25  22 rrwlvkgllpagelallaGapgtGKttlaldlalavatGkpwlgpvapeqgkVlyvsaEdsedelrrRlravgeal....................... 97 
                 ++ l+ g + +++l+ + G pg+GKt la++lalav + + + g      g  +y+++E+s   +++R  a+ e l                       
  KOO21186.1  95 LDRLLAGGVQLQKLSEFSGVPGVGKTQLAMQLALAVQLPEALNG----LDGDAIYIDTEGSF--FAPRCLAMAESLlsqiqdeasrhgspeqraevgal 187
                 5566666668999999*********************9999999....68************..***********9999******99999998888888 PP

      AAA_25  98 ......rddarllvldlagveslpLfakdrggtlltadvdaleaaieeveg..vrlvviDplsralggdensnsd.....vgalvealeriarrtgaav 183
                       +    l  +++ +v   +L+++ +  ++l++++ ++++ +  ++g  vrlvv+D++++ ++++ +   +     vg++ + l + arr  +av
  KOO21186.1 188 vksgarA---MLGRIHYYRV--HDLAEQLAVCHVLPEAIGEIARNAPGRPGrcVRLVVVDSIAFHVRASTELTYAkrlqlVGQMAQLLSHAARRSPCAV 281
                 8885442...3333333333..3355555666789*************999*************99995555444467878****************** PP

      AAA_25 184 llvhHv 189
                 +l+ +v
  KOO21186.1 282 VLINQV 287
                 **9876 PP

>> RecA  recA bacterial DNA recombination protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.5   0.0    0.0047        10      29      92 ..      83     151 ..      74     195 .. 0.77
   2 !   13.4   0.0   1.8e-05      0.04     131     218 ..     235     317 ..     230     334 .. 0.77

  Alignments for each domain:
  == domain 1  score: 5.5 bits;  conditional E-value: 0.0047
                 ----EE--S-HHHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHHH......TT--EEEEESS-- CS
        RecA  29 lkvetissGslaldialGiGGlpkGriieiyGpessGkttlalhaiaeaqk......kggvaafidaeha 92 
                    + is+ +  ld  l  GG+   ++ e  G+   Gkt la+++   +q        +g a +id+e +
  KOO21186.1  83 RAEQRISTCAGELDRLLA-GGVQLQKLSEFSGVPGVGKTQLAMQLALAVQLpealngLDGDAIYIDTEGS 151
                 455778999999999887.***********************9987777741111113466777777765 PP

  == domain 2  score: 13.4 bits;  conditional E-value: 1.8e-05
                 --SEEEEE-TTT--.-STT-----------HHHHHHHHHHHHHHHHHTTT--EEEEEEE---------------.--HHHHHHH-SEEEE CS
        RecA 131 aidlivvdsvaalv.pkaeieGemgdskvglqarlmsqalrkltgaisksntvvifinqirekiGvmfgnpett.tGGralkfyasvrld 218
                 ++ l+vvds+a  v   +e+      + vg  a+l+s+a r       +s ++v++inq+ +++  + g+     + G+a    ++v++ 
  KOO21186.1 235 CVRLVVVDSIAFHVrASTELTYAKRLQLVGQMAQLLSHAAR-------RSPCAVVLINQVTTRVNEVLGTSGLVpALGEAWAHMCNVQVS 317
                 5889*******877256799999999999*99***999988.......6899999****9999987777554440447776666666655 PP

>> DnaB_C  DnaB-like helicase C terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.9   0.0   6.9e-07    0.0015       7     183 ..      93     292 ..      88     297 .. 0.71

  Alignments for each domain:
  == domain 1  score: 17.9 bits;  conditional E-value: 6.9e-07
                 HHHHHHC.TSBXTTXEEEEEEXTTSSHHHHHHHHHHHHHHCSTSE...EEEEESSSXHHHHHHHHHH....HHHTXXHHHHHHTTSX.HHHHHHHHH.. CS
                 xxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxx....xxxxxxxxxxxxxxxx.xxxxxxxxx.. RF
      DnaB_C   7 kdLDklt.sGlqkgdliiiAarpsmGktalalniaenaavkeklp...vavfslemsaeqlvqRlls....seaeidskklrtgklk.eedweklte.. 94 
                  +LD+l+ +G+q ++l    + p++Gkt la+++a ++   e l+      + ++ + +  + R+l+      ++i+ ++ r+g+ + ++++  l +  
  KOO21186.1  93 GELDRLLaGGVQLQKLSEFSGVPGVGKTQLAMQLALAVQLPEALNgldGDAIYIDTEGSFFAPRCLAmaesLLSQIQDEASRHGSPEqRAEVGALVKsg 191
                 68998762689************************9988755443333445556777777888888732223468888889999876577888888744 PP

                 HHHHHHHSEEE.EEEXS.SX.....CHHHHHHHHHHHHHH..TTEEEEEEEEGGGTBTS.CS..SSCCCHHHHHHHHHHHHHHHHCTSXEEEEEEXSGG CS
                 xxxxxxxxxxx.xxxxx.xx.....xxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxx.xx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
      DnaB_C  95 aieelseaklf.iddtp.al.....tvseirskarrlkke..kglgliviDyLqlmegs.ee..kenreqevseisrsLkalakelnvpvialsqLsra 181
                 a ++l + + + ++d + +l      ++ i + ar+   +  + ++l+v+D +     + +e    +r q v ++++ L + a+   + v+ + q+  +
  KOO21186.1 192 ARAMLGRIHYYrVHDLAeQLavchvLPEAIGEIARNAPGRpgRCVRLVVVDSIAFHVRAsTEltYAKRLQLVGQMAQLLSHAARRSPCAVVLINQVTTR 290
                 466777777654566442442222234455555666555577889********986654355656699999***********************99877 PP

                 GC CS
                 xx RF
      DnaB_C 182 ve 183
                 v+
  KOO21186.1 291 VN 292
                 65 PP

>> ATPase  KaiC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.0   4.3e-06    0.0097       3      40 ..      90     127 ..      88     139 .. 0.90
   2 ?   -1.1   0.0      0.45     1e+03     122     152 ..     238     267 ..     233     297 .. 0.46

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 4.3e-06
      ATPase   3 tgIeglDeilkgGipegrvvlitGepGtGKtifalqFl 40 
                 t   +lD++l gG+  ++    +G+pG GKt +a+q +
  KOO21186.1  90 TCAGELDRLLAGGVQLQKLSEFSGVPGVGKTQLAMQLA 127
                 56668******************************976 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 0.45
      ATPase 122 rvviDsitglayeekeavaReilrqlvrvlk 152
                  vv+Dsi+ +  +++++++ +   qlv +++
  KOO21186.1 238 LVVVDSIAFH-VRASTELTYAKRLQLVGQMA 267
                 5677777655.22222222222222222222 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.2   3.5e-05     0.079      29     132 ..     111     275 ..      85     286 .. 0.59

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 3.5e-05
      AAA_16  29 lsGesGvGKsslvrellralekd........ggiflrgkcdqlesaipysa.laqalareellrqlldeaesaeleawrekleeala............ 106
                 +sG +GvGK+ l+ +l+ a++          ++i++ ++   +      ++  + ++  e+ll q+ dea+    ++ r++  + ++            
  KOO21186.1 111 FSGVPGVGKTQLAMQLALAVQLPealngldgDAIYIDTEGSFF------APrCLAMA--ESLLSQIQDEASRHGSPEQRAEVGALVKsgaramlgrihy 201
                 69***********999976666644665553344433333333......55355555..4899999999666555555554444444777888889998 PP

      AAA_16 107 ................................................avpelagaeasrllellkrllallsr 132
                                                                 a+ el+ a++ +l  ++++ll+ ++r
  KOO21186.1 202 yrvhdlaeqlavchvlpeaigeiarnapgrpgrcvrlvvvdsiafhvrASTELTYAKRLQLVGQMAQLLSHAAR 275
                 85555555555555555555555555555555555555555555555544555555555555555555544444 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   6.4e-05      0.14       3      21 ..     110     128 ..     108     214 .. 0.82

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 6.4e-05
      AAA_33   3 llvGlpGsGKstlaerllk 21 
                 ++ G+pG+GK++la +l+ 
  KOO21186.1 110 EFSGVPGVGKTQLAMQLAL 128
                 689*************963 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   0.0   0.00032      0.72       6      23 ..     113     130 ..     111     136 .. 0.87
   2 ?   -1.2   0.0      0.81   1.8e+03      14      38 ..     265     290 ..     259     297 .. 0.77

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.00032
                 --SSSSHHHHHHHGGGGB CS
       AAA_5   6 GppGtgKselaerlaaal 23 
                 G pG+gK++la++la a+
  KOO21186.1 113 GVPGVGKTQLAMQLALAV 130
                 99************9776 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 0.81
                 HHHHHGGGGB.S--EEEEE--TT--H CS
       AAA_5  14 elaerlaaal.nreveyvqltrdtte 38 
                 ++a+ l++a  +++  +v++++ tt+
  KOO21186.1 265 QMAQLLSHAArRSPCAVVLINQVTTR 290
                 46777777778888888888888875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (433 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       330  (0.0184059); expected 358.6 (0.02)
Passed bias filter:                      295  (0.0164538); expected 358.6 (0.02)
Passed Vit filter:                        49  (0.002733); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.50u 0.23s 00:00:00.73 Elapsed: 00:00:00.39
# Mc/sec: 3297.58
//
Query:       KOO21187.1  [L=116]
Description: hypothetical protein Ctob_005943 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (116 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       406  (0.0226449); expected 358.6 (0.02)
Passed bias filter:                      212  (0.0118244); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.24s 00:00:00.60 Elapsed: 00:00:00.40
# Mc/sec: 865.51
//
Query:       KOO21188.1  [L=487]
Description: histone deacetylase 1 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.3e-79  267.9   0.0    1.7e-79  267.5   0.0    1.1  1  Hist_deacetyl  Histone deacetylase domain


Domain annotation for each model (and alignments):
>> Hist_deacetyl  Histone deacetylase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  267.5   0.0   9.6e-84   1.7e-79       1     306 [.      37     334 ..      37     335 .. 0.94

  Alignments for each domain:
  == domain 1  score: 267.5 bits;  conditional E-value: 9.6e-84
                    SCCGTHHHHHHHHHHHHT.THHHHCCE.EE-----HHHHTTTS-HHHHHHHHCHHHHCHHT.TTHCCHHHCCTSTSSSSSTHCTTTCCHHHHHHHH CS
                    xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Hist_deacetyl   1 hpenpkRlsaileslaesvglldelelliqpseatkeellkvHskeYlelleslsnelkkkeeakekeleeiasklldddtpvspktlkaallavg 96 
                    hp++p+R++ ++++l  ++gl +++  +++p++a   +l+++Hs+eY+++l++++ e  ++  +    le+ +     dd+p+++++++++++ +g
     KOO21188.1  37 HPMRPHRVR-MTHHLVVNYGLYKQMN-IFRPKPAAYGDLTTFHSDEYINFLRTVTPENMEEP-NFRSVLERFN---ICDDCPIFDGLYEYCQAYTG 126
                    89*******.99*****9**998766.6*************************998887776.3444444444...6799**************** PP

                    HHHHHHHHHHTTSSSEEEETT.SS--TT-BTTB-BTTBSS-HHHHHHHHHHHCC-SS-EEEEE-SSS--HHHHHHCTT-TTEEEEEEEE-C....C CS
                    xxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx....x RF
  Hist_deacetyl  97 avleavdavlsgsvkaafvlv.rPpgHHakaseasGFClvNnvaiaikylqakhelkrvailDvDvHhGnGteeafysdpdvltlSiHrye....g 187
                    +++ ++ ++ +g   +++v++  ++ HHak++easGFC+ N++++ai +l ++h   rv+++D+D+HhG+G+eeafy +++vltlS+H ++    +
     KOO21188.1 127 GSIGGAARINQG--CSDIVINwAGGLHHAKRGEASGFCYTNDIVLAILELLKVHA--RVLYIDIDIHHGDGVEEAFYLTNRVLTLSFHASHdtsgT 218
                    **********99..99999999******************************766..********************************9555669 PP

                    TSTTSS--TT---SGGGTTSEEEEEE-TT-BHHHHHHHHHHCHHHHHCCH--SEEEEEE-STTBTTSTT-S-BB-HHHHHHHHHHHCCCHGS-G.E CS
                    xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Hist_deacetyl 188 ifyPgtgaledlgegkgkgfnlnvpleegtgdeeylkvfeeilrpvleefkPdlilvsaGfDalkgdplgelnlsvegykeltkklaeladkvkkv 283
                    +f+P tg+++d+g ++gk++++n+p+ +g++d  y ++f+ ++r+++e+f+P++++  +G+D+l+gd++g +nls++g++ + + ++++     ++
     KOO21188.1 219 SFFPRTGHINDTGGKAGKNYSVNFPMFAGVDDVAYESIFKPVIRKIMEKFQPSVVVFCCGADSLSGDRVGCWNLSIKGHAAVLEFVKTFNL---PM 311
                    ****************************************************************************************998...99 PP

                    EEEE-S---HHHHHHHHHHHHHH CS
                    xxxxxxxxxxxxxxxxxxxxxxx RF
  Hist_deacetyl 284 vllleGGYnlealaravtavlsa 306
                    ++l++GGY+++++ar++ + +s 
     KOO21188.1 312 LVLGGGGYSIRNVARCWCYETSR 334
                    *****************998875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (487 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       528  (0.0294495); expected 358.6 (0.02)
Passed bias filter:                      465  (0.0259356); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.56u 0.26s 00:00:00.82 Elapsed: 00:00:00.43
# Mc/sec: 3372.69
//
Query:       KOO21189.1  [L=212]
Description: chaperone protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    9.4e-24   83.3   0.7    2.3e-22   78.9   0.1    2.5  2  DnaJ       DnaJ domain
      0.006   16.8   1.1     0.0089   16.3   1.1    1.3  1  DUF1977    Domain of unknown function (DUF1977)
  ------ inclusion threshold ------
       0.54   10.5   6.8       0.12   12.6   1.3    2.5  2  THDPS_N_2  Tetrahydrodipicolinate N-succinyltransferase N-ter


Domain annotation for each model (and alignments):
>> DnaJ  DnaJ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   78.9   0.1   3.8e-26   2.3e-22       2      63 .]       6      71 ..       5      71 .. 0.89
   2 ?    2.3   0.1     0.031   1.9e+02      42      63 .]      83     104 ..      76     104 .. 0.83

  Alignments for each domain:
  == domain 1  score: 78.9 bits;  conditional E-value: 3.8e-26
                HHHHHTSSTTG-HHHHHHHHHHHHHHHSTTTSCCHH....HHHHHHHHHHHHHHHHTSHHHHHHHH CS
        DnaJ  2 yYeiLgvskdasedeIkkaYrklalkyHPDknpkdp....eaeekFkeineAyevLsdpekRkqYD 63
                +Y+ Lg+++da ed+Ik+++r+lalk+HPDk+++ +     ae++Fke+n+Ay+vLsdpe+R++YD
  KOO21189.1  6 PYDSLGLPPDAGEDDIKRSFRRLALKLHPDKQTGTSeereIAERQFKEVNAAYSVLSDPERRQRYD 71
                7*****************************99444422346778*********************9 PP

  == domain 2  score: 2.3 bits;  conditional E-value: 0.031
                 HHHHHHHHHHHHTSHHHHHHHH CS
        DnaJ  42 kFkeineAyevLsdpekRkqYD 63 
                 + k i++A e L  +++R++ D
  KOO21189.1  83 ARKLIEAAVESLDAEKQRAACD 104
                 5589**************9866 PP

>> DUF1977  Domain of unknown function (DUF1977)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   1.1   1.5e-06    0.0089      36     104 ..      66     145 ..      32     146 .. 0.73

  Alignments for each domain:
  == domain 1  score: 16.3 bits;  conditional E-value: 1.5e-06
     DUF1977  36 evskyss.........kklrklekeveeeyvqnlraeCerekeqkerlieraqgwf.gtd.eeklekaekmklpsCeeLk 104
                  +++y++         ++++ +e  ve+   ++ ra C  + +qk+  +++a++   g + e+++  ae++ +p+C++Lk
  KOO21189.1  66 RRQRYDQtatlvnsdaQARKLIEAAVESLDAEKQRAACDAQLRQKQLATNEARRRPkGPErEQHVSAAEALLTPACDALK 145
                 3555533444444443457779******************************954445555999**************98 PP

>> THDPS_N_2  Tetrahydrodipicolinate N-succinyltransferase N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   1.3   2.1e-05      0.12      12      54 ..      69     115 ..      65     120 .. 0.73
   2 ?    0.0   0.4      0.17     1e+03      39      46 ..     149     168 ..     118     194 .. 0.52

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 2.1e-05
                 TGGG--S.SS--HHHHHHHHHHHHHHHTTSS-SEEE...ETTEEEE- CS
   THDPS_N_2  12 rrdelep.etagaearaaveevleaLdaGelRvAek...kdgeWevn 54 
                 r+d+  +  +++a+ar+ +e+++e+Lda + R+A +   ++ +  +n
  KOO21189.1  69 RYDQTATlVNSDAQARKLIEAAVESLDAEKQRAACDaqlRQKQLATN 115
                 4555554466789*********************8533333445555 PP

  == domain 2  score: 0.0 bits;  conditional E-value: 0.17
                 TSS-SEE............E CS
   THDPS_N_2  39 GelRvAe............k 46 
                 Ge R A+            +
  KOO21189.1 149 GEKRSASeafkakvaegalP 168
                 55555553333332224431 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (212 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1261  (0.070333); expected 358.6 (0.02)
Passed bias filter:                      524  (0.0292264); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.41u 0.25s 00:00:00.65 Elapsed: 00:00:00.38
# Mc/sec: 1654.89
//
Query:       KOO21190.1  [L=678]
Description: ATP-binding cassette [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.4e-26   93.7   0.0    1.9e-26   93.2   0.0    1.2  1  ABC_tran       ABC transporter
    5.2e-06   27.0   0.0    1.6e-05   25.3   0.0    1.9  1  AAA_16         AAA ATPase domain
    2.6e-05   23.8  18.5    3.4e-05   23.4  17.1    2.0  1  ABC2_membrane  ABC-2 type transporter
    3.7e-05   23.7   0.4       0.17   11.6   0.1    2.2  2  AAA_21         AAA domain, putative AbiEii toxin, Type IV TA 
    0.00062   19.7   0.0     0.0011   18.9   0.0    1.3  1  RsgA_GTPase    RsgA GTPase
     0.0043   16.8   0.1      0.013   15.2   0.1    1.9  1  AAA_29         P-loop containing region of AAA domain
     0.0065   16.4   0.1      0.011   15.6   0.1    1.3  1  Rad17          Rad17 P-loop domain
     0.0085   16.4   0.2      0.028   14.7   0.1    1.9  2  AAA_22         AAA domain
     0.0086   15.5   0.0        3.7    6.9   0.0    2.2  2  SMC_N          RecF/RecN/SMC N terminal domain
  ------ inclusion threshold ------
      0.011   15.3   0.5       0.05   13.2   0.1    2.0  2  AAA_25         AAA domain
      0.027   14.4   0.0      0.045   13.7   0.0    1.2  1  ATPase_2       ATPase domain predominantly from Archaea
      0.055   13.9   0.0       0.49   10.8   0.0    2.1  2  RNA_helicase   RNA helicase
      0.062   12.8   0.0         11    5.5   0.0    2.3  2  AAA_7          P-loop containing dynein motor region
       0.15   10.8   0.1       0.23   10.2   0.1    1.2  1  Adeno_IVa2     Adenovirus IVa2 protein
       0.17   11.6   0.0        1.3    8.7   0.0    2.0  2  AAA_30         AAA domain
       0.24   11.6   0.1       0.46   10.7   0.1    1.4  1  AAA_28         AAA domain
       0.33   11.4   0.0       0.53   10.8   0.0    1.2  1  AAA_23         AAA domain


Domain annotation for each model (and alignments):
>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   93.2   0.0   1.8e-29   1.9e-26       2     137 .]      38     187 ..      37     187 .. 0.95

  Alignments for each domain:
  == domain 1  score: 93.2 bits;  conditional E-value: 1.8e-29
                 EEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGGB-HHHCCHCEEEE-SS--S-TTSBHHHH................HHHTC CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx................xxxxx RF
    ABC_tran   2 knvslklkegekvaivGenGaGKStLlkllagllkpteGeilldgkdlkeqeleslrkeigvlpqepqlfpeltvren................esdee 84 
                 ++ s  ++++e+++++G++G+GKStLl+ll+g+l+pt G+i l+gk+ +    +++ k ig++pqe+ +   ltv e                 + +++
  KOO21190.1  38 SDASGVVEPDEITVVMGPSGCGKSTLLSLLSGKLRPTRGTIFLNGKPGSV---REMYKLIGFVPQEDVMLTSLTVMELlwfsaicrlprdlpraTLNAW 133
                 56778899************************************999887...8999************************************9999** PP

                 HHHHHHHSTTGGTTCBGESTTS.GGS-HHHHHHHHHHHHHHHTSSEEEEESTTT CS
                 xxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  85 iekalsklglkelkdtvvkssp.ssLSgGqkqrvalarallkkpkllllDEpta 137
                 ++ +l+ lgl++ +++++++ + + LSgGq++rv +a  l+ +p+l++lDEpt+
  KOO21190.1 134 VHMVLDLLGLTQHRHKRIGDAQrRGLSGGQRKRVNVAIELVADPSLIFLDEPTS 187
                 ************99999988888*****************************96 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.3   0.0   1.5e-08   1.6e-05      24     164 ..      46     207 ..      36     215 .. 0.66

  Alignments for each domain:
  == domain 1  score: 25.3 bits;  conditional E-value: 1.5e-08
      AAA_16  24 p.elvllsGesGvGKsslvrellralekdg.giflrgkcdqlesa...........ipy...salaqalareellrqlldeaesaeleawrekleeala 106
                 p e++++ G+sG+GKs+l+  l   l+ ++  ifl+gk  + ++            + +   +++ ++l + + +  l +++  a l+aw +  ++ l+
  KOO21190.1  46 PdEITVVMGPSGCGKSTLLSLLSGKLRPTRgTIFLNGKPGSVREMykligfvpqedV-MltsLTVMELL-WFSAICRLPRDLPRATLNAWVHMVLDLLG 142
                 3489********************9999966999*******9222344444333331.03424466666.55777777777777788888887777777 PP

      AAA_16 107 ............avpelagaeasrllellkrllallsrderplvlvlDdlq..wadeaslqllaaLlrlles 164
                             + + l+g +++r++ ++          ++p +++lD+       +a l+l+++L rl+++
  KOO21190.1 143 ltqhrhkrigdaQRRGLSGGQRKRVNVAIELV-------ADPSLIFLDEPTsgLDSTAALELMQCLHRLSSH 207
                 77776666655555555555556665554333.......347889999766433444667777777777665 PP

>> ABC2_membrane  ABC-2 type transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.4  17.1   3.2e-08   3.4e-05      52     210 .]     309     515 ..     260     515 .. 0.74

  Alignments for each domain:
  == domain 1  score: 23.4 bits;  conditional E-value: 3.2e-08
  ABC2_membrane  52 r.....................................................pgllffsvlflafsaltsvapvferergvlerelvsplysls 94 
                                                                          + +l  s+l +a+++++ + ++f  er+v+ re  s+ +s +
     KOO21190.1 309 WgaacreqlwekrswfarpawfcaselfapfadlfpdqaleievdqfmgvrmgyAQALTLSLLAMAIVSIQVSLNLFGAERPVFWRE--SRHFSIA 402
                    14455555555566666666666666666666666666666666666677777788899999999999999999**********766..444577* PP

  ABC2_membrane  95 ayvlakvlvelpvsllqalifllivyflv.gldlsrfflflllllltalaasslgllisalapsfedasqlaslvllpllllsGffipidsmpkwl 189
                    ay l+k l++lp++l+  + fll+++ l+  + +  f  f++++ll+ +a+ ++g lis  +   ++ +   ++  l++++l+G f  ++s+   +
     KOO21190.1 403 AYTLGKNLAFLPLTLAYPFFFLLFFFQLLrPYAP--FHAFYVVFLLVEWAGEGVGQLISLQLNASRQLAG--GIAALIFTVLTGSFPLLSSLGLGF 494
                    ***********************88877625555..99999******************97776666554..4445556679****9*****7699 PP

  ABC2_membrane 190 qwiaylnPltyavealrsnlf 210
                      i+y ++ +++++al+s +f
     KOO21190.1 495 EIISYTSFCRWGMQALLSLEF 515
                    9****************9987 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.6   0.1   0.00016      0.17       1      21 [.      49      69 ..      49      88 .. 0.80
   2 !   10.2   0.0   0.00046      0.48     226     288 ..     148     207 ..      86     220 .. 0.79

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 0.00016
      AAA_21  1 lnvliGpNgsGKSnLLdaldl 21
                ++v+ Gp g+GKS+LL +l++
  KOO21190.1 49 ITVVMGPSGCGKSTLLSLLSG 69
                79****************975 PP

  == domain 2  score: 10.2 bits;  conditional E-value: 0.00046
      AAA_21 226 ngdgqelparelSdGtkrllalltallralkkgsllliDEpEngLHPkllrrllellkelsrn 288
                 +++ ++ + r lS G+++   ++  l +++   sl+++DEp +gL+  +  +l++ l +ls++
  KOO21190.1 148 HKRIGDAQRRGLSGGQRKRVNVAIELVADP---SLIFLDEPTSGLDSTAALELMQCLHRLSSH 207
                 555555555678888888888888899888...*************99998888888666654 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.9   0.0     1e-06    0.0011      99     124 ..      47      72 ..      22      86 .. 0.86

  Alignments for each domain:
  == domain 1  score: 18.9 bits;  conditional E-value: 1e-06
                  TSEEEEECSTTSSHHHHHHHHCTT-- CS
  RsgA_GTPase  99 dktsvlvGqSGvGKStLinallpele 124
                  d+++v++G+SG GKStL+  l ++l+
   KOO21190.1  47 DEITVVMGPSGCGKSTLLSLLSGKLR 72 
                  589*****************999865 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.1   1.3e-05     0.013      19      39 ..      44      64 ..      35      82 .. 0.82

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 1.3e-05
      AAA_29 19 idlkgatlltGpsGsGKSTll 39
                ++++++t+++GpsG GKSTll
  KOO21190.1 44 VEPDEITVVMGPSGCGKSTLL 64
                456689**************9 PP

>> Rad17  Rad17 P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.1   1.1e-05     0.011      44      69 ..      46      71 ..      34      84 .. 0.85

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 1.1e-05
       Rad17 44 kkriLLisGPsGCgkstvvkvLskel 69
                + +i ++ GPsGCgkst +  Ls +l
  KOO21190.1 46 PDEITVVMGPSGCGKSTLLSLLSGKL 71
                567999****************9776 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   0.1   2.6e-05     0.028       5      29 ..      47      71 ..      44      96 .. 0.79
   2 ?   -2.4   0.0       5.1   5.4e+03      81     117 ..     166     203 ..     126     217 .. 0.51

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 2.6e-05
      AAA_22  5 agilvvtGesGtGKTtllrrlleql 29
                + i+vv+G+sG+GK+tll  l  +l
  KOO21190.1 47 DEITVVMGPSGCGKSTLLSLLSGKL 71
                5799**************9987776 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 5.1
      AAA_22  81 aleqalraravielliiDEaqh.lrseealeeLrslln 117
                 +++ a++  a+++l+ +DE    l+s +ale    l+ 
  KOO21190.1 166 RVNVAIELVADPSLIFLDEPTSgLDSTAALELMQCLHR 203
                 33333333333677777777776664444444433333 PP

>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.9   0.0    0.0035       3.7      24      41 ..      47      64 ..      38      71 .. 0.87
   2 !    6.5   0.0    0.0047         5     136     190 ..     158     208 ..      73     230 .. 0.80

  Alignments for each domain:
  == domain 1  score: 6.9 bits;  conditional E-value: 0.0035
                SSEEEEEESTTSSHHHHH CS
                xxxxxxxxxxxxxxxxxx RF
       SMC_N 24 ksftaivGpNGSGKsnll 41
                +++t+++Gp G+GKs ll
  KOO21190.1 47 DEITVVMGPSGCGKSTLL 64
                469************987 PP

  == domain 2  score: 6.5 bits;  conditional E-value: 0.0047
                 CS-HHHHHHHHHHHHHHHHCCS--SEEEECTTTTTS-HHHHHHHHHHHHHHCTTS CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N 136 lLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvkkvaellkekskna 190
                  LSgG+++ v +a    i+ v   +l +lDe  + LD +   ++ + l++ s++ 
  KOO21190.1 158 GLSGGQRKRVNVA----IELVADPSLIFLDEPTSGLDSTAALELMQCLHRLSSHG 208
                 69*****987765....6678888999*********************9988764 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.1   4.8e-05      0.05      28      55 ..      42      69 ..      40      88 .. 0.83
   2 ?   -0.5   0.1      0.76     8e+02     117     188 ..     152     216 ..     122     220 .. 0.60

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 4.8e-05
      AAA_25 28 gllpagelallaGapgtGKttlaldlal 55
                g++  +e+++++G++g+GK+tl++ l+ 
  KOO21190.1 42 GVVEPDEITVVMGPSGCGKSTLLSLLSG 69
                788999****************998875 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 0.76
      AAA_25 117 fakdrggtlltadvdaleaaieevegvrlvviDplsralggdensnsdvgalvealeriarrtgaavllvhH 188
                  +++r+g    ++ +++  aie v+++ l+ +D  ++ l     +++++ +l+++l r+   +g+av++v H
  KOO21190.1 152 GDAQRRGLS-GGQRKRVNVAIELVADPSLIFLDEPTSGL-----DSTAALELMQCLHRL-SSHGVAVCAVIH 216
                 444444444.45566777777777888888888644432.....344556666677776.467777777776 PP

>> ATPase_2  ATPase domain predominantly from Archaea
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.0   4.2e-05     0.045      18      38 ..      45      65 ..      42      81 .. 0.87

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 4.2e-05
    ATPase_2 18 epneiyfiYGpegsGKtaLlk 38
                ep+ei ++ Gp g+GK++Ll 
  KOO21190.1 45 EPDEITVVMGPSGCGKSTLLS 65
                799****************96 PP

>> RNA_helicase  RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   0.00047      0.49       2      23 ..      51      72 ..      50      98 .. 0.78
   2 ?    0.1   0.0      0.98     1e+03       8      58 ..     234     283 ..     233     287 .. 0.71

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00047
  RNA_helicase  2 wlyGpsgeGKStlakeLakall 23
                  ++ Gpsg+GKStl   L+ +l 
    KOO21190.1 51 VVMGPSGCGKSTLLSLLSGKLR 72
                  689***********99776665 PP

  == domain 2  score: 0.1 bits;  conditional E-value: 0.98
  RNA_helicase   8 geGKStlakeLakallkklklkkkdsvys.rnpeddfwdgYtgqevvvidDf 58 
                   g+GK++++ +  +al+    l     + +  n++d+ +d  ++ +v+++ D+
    KOO21190.1 234 GTGKTVYMGPTLQALAYFQSL--GFVFSTrENVADQLLDVLERGAVNIVRDL 283
                   89*******988877733222..23444457788888888888888888886 PP

>> AAA_7  P-loop containing dynein motor region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.8   0.0     0.017        18      35      58 ..      49      72 ..      40      81 .. 0.79
   2 ?    5.5   0.0      0.01        11      35      82 ..     228     272 ..     221     284 .. 0.78

  Alignments for each domain:
  == domain 1  score: 4.8 bits;  conditional E-value: 0.017
       AAA_7 35 pvllvGptGtGKtviikdllkkld 58
                 ++++Gp+G+GK+++++ l  kl 
  KOO21190.1 49 ITVVMGPSGCGKSTLLSLLSGKLR 72
                57899*********9988777766 PP

  == domain 2  score: 5.5 bits;  conditional E-value: 0.01
       AAA_7  35 pvllvGptGtGKtviikdllkkldkekylsltinfsaqts.anqlqdii 82 
                 ++ll G  GtGKtv++  +l++l    ++sl + fs + + a ql d++
  KOO21190.1 228 SLLLLG--GTGKTVYMGPTLQALA--YFQSLGFVFSTRENvADQLLDVL 272
                 566666..88*************9..99999999998866244555555 PP

>> Adeno_IVa2  Adenovirus IVa2 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.1   0.00022      0.23      89     121 ..      49      79 ..      37      85 .. 0.84

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.00022
  Adeno_IVa2  89 iGviyGPtGsGksqllrnlissklisPiPetvi 121
                 i v+ GP G+Gks ll +l+s kl  P+  t++
  KOO21190.1  49 ITVVMGPSGCGKSTLL-SLLSGKL-RPTRGTIF 79 
                 88************99.6889886.67776665 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.7   0.0    0.0013       1.3      16      43 ..      45      72 ..      41     122 .. 0.83
   2 ?    0.1   0.0      0.54   5.7e+02      28      43 ..     234     249 ..     230     283 .. 0.71

  Alignments for each domain:
  == domain 1  score: 8.7 bits;  conditional E-value: 0.0013
      AAA_30 16 sgdrvavltGpAGtGKttalkalreawe 43
                ++d ++v+ Gp G GK+t+l+ l   ++
  KOO21190.1 45 EPDEITVVMGPSGCGKSTLLSLLSGKLR 72
                567899**************99876555 PP

  == domain 2  score: 0.1 bits;  conditional E-value: 0.54
      AAA_30  28 GtGKttalkalreawe 43 
                 GtGKt  ++   +a++
  KOO21190.1 234 GTGKTVYMGPTLQALA 249
                 9*******98877765 PP

>> AAA_28  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.1   0.00043      0.46       3      21 ..      51      69 ..      49      93 .. 0.81

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00043
      AAA_28  3 vitGgestGKTtlleaLaa 21
                v++G++++GK+tll+ L+ 
  KOO21190.1 51 VVMGPSGCGKSTLLSLLSG 69
                89**************994 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0    0.0005      0.53      20      37 ..      48      65 ..      41      69 .. 0.89

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.0005
      AAA_23 20 gltlItGpNGaGKTTild 37
                 +t++ Gp G+GK+T+l 
  KOO21190.1 48 EITVVMGPSGCGKSTLLS 65
                589*************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (678 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       567  (0.0316247); expected 358.6 (0.02)
Passed bias filter:                      420  (0.0234257); expected 358.6 (0.02)
Passed Vit filter:                        87  (0.00485247); expected 17.9 (0.001)
Passed Fwd filter:                        17  (0.000948185); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              17  [number of targets reported over threshold]
# CPU time: 0.67u 0.29s 00:00:00.96 Elapsed: 00:00:00.45
# Mc/sec: 4529.64
//
Query:       KOO21191.1  [L=681]
Description: s9a b c catalytic domain protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    6.8e-48  162.9   0.0    2.4e-47  161.1   0.0    1.8  2  Peptidase_S9   Prolyl oligopeptidase family
    1.4e-09   37.8   0.0    2.4e-09   37.1   0.0    1.4  1  DLH            Dienelactone hydrolase family
    1.6e-05   24.3   0.3    0.00053   19.3   0.0    2.2  2  Hydrolase_4    Serine aminopeptidase, S33
    0.00093   18.7   1.2     0.0013   18.2   0.1    1.8  2  Esterase_phd   Esterase PHB depolymerase
     0.0028   17.7   0.0      0.015   15.4   0.0    2.0  2  Abhydrolase_4  TAP-like protein
     0.0063   16.2   0.0      0.017   14.8   0.0    1.7  2  Abhydrolase_1  alpha/beta hydrolase fold
  ------ inclusion threshold ------
      0.015   15.1   0.1      0.086   12.7   0.1    2.1  1  Abhydrolase_3  alpha/beta hydrolase fold
      0.083   12.0   0.1       0.14   11.3   0.1    1.2  1  PAE            Pectinacetylesterase


Domain annotation for each model (and alignments):
>> Peptidase_S9  Prolyl oligopeptidase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.0      0.62   1.4e+03     122     157 ..     205     241 ..     190     250 .. 0.72
   2 !  161.1   0.0   1.1e-50   2.4e-47       2     210 ..     453     660 ..     452     662 .. 0.96

  Alignments for each domain:
  == domain 1  score: -1.4 bits;  conditional E-value: 0.62
                   TTCHHHHHHHHHH-CGGG--.---EEEEEEETT-SSS CS
  Peptidase_S9 122 eeneegykelspyspldnvk.aypplLlihGlaDdrv 157
                    ++ ++ +++  ++++++    ++++L+  G+ D+ v
    KOO21191.1 205 PWDATELRTRPLADDAAAAPeTTTHTLVAGGDGDTSV 241
                   34444465666666666655799***********998 PP

  == domain 2  score: 161.1 bits;  conditional E-value: 1.1e-50
                   ---HHHHHHHCCT-EEEEE--TTSSTTHCHHHHTTSGGGGHHHHHHHHHHHHHHHHTTS--GGGEEEEEETHHHHHHHHHHHH-GGG-SEEEEESE- CS
  Peptidase_S9   2 sfsselqlladrGyvvvvanirGsggyGeafhdagkrklgqnefdDfiaaaealakegyvdserlaitGgSyGGyltgaalnqrpdlFkaavaevpv 98 
                   sf+ ++q++++rG++v+ +++ Gs+gyG+++++++++ +g +++dD+ a+a++l++eg++d++rl+i GgS+GGy+t+ al+   d+F a+ + ++v
    KOO21191.1 453 SFNANIQFFTSRGFAVLDVDYGGSTGYGRDYRRRLRGAWGVVDIDDVCAGAQYLVSEGLADPKRLCIDGGSAGGYTTLSALA-FRDVFTAGTSLYGV 548
                   799*******************************************************************************.99************ PP

                   --CCCHHCSTTSTHHHCCCC--TTT..CHHHHHHHHHH-CGGG-----EEEEEEETT-SSS-THHHHHHHHHHH--S-SEEEEEETTS-SSTTSSHH CS
  Peptidase_S9  99 vdvlrydsdtdllteeymewgnpee..neegykelspyspldnvkaypplLlihGlaDdrvppaealklvaaLqkkgknvlllifpdegHgvgkpra 193
                   +d+ +   dt+ ++ +y +    ++  +++ y++++p++ +d+   ++p+Ll++G++D+ vpp++a+ + aaL +kg +  l+++ +e+Hg+++  +
    KOO21191.1 549 ADLGTLAGDTHKFESRYLDGLVGRYpeDKALYDARAPINAVDQ--LSCPILLLQGTEDKIVPPNQAELMHAALLSKGLPCALKMYEGEQHGFRQAPN 643
                   *********999***9999766654559999************..**************************************************** PP

                   HHHHHHHHHHHHHHHCT CS
  Peptidase_S9 194 kveelarllaFlkealg 210
                     + l+++l F+ +++g
    KOO21191.1 644 IEDALNSELYFYSRVFG 660
                   ************99987 PP

>> DLH  Dienelactone hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.1   0.0   1.1e-12   2.4e-09     120     192 ..     564     641 ..     496     655 .. 0.89

  Alignments for each domain:
  == domain 1  score: 37.1 bits;  conditional E-value: 1.1e-12
         DLH 120 pevdaavafYG.....lspekeleeaakikapilalfgeeDefipadevekleealkaanvdlelkvYpgagHaFand 192
                  ++d+ v+ Y+       +  ++++++++++pil l g+eD+++p +++e ++ al  ++ +++lk+Y+g +H+F ++
  KOO21191.1 564 RYLDGLVGRYPedkalYDARAPINAVDQLSCPILLLQGTEDKIVPPNQAELMHAALLSKGLPCALKMYEGEQHGFRQA 641
                 467888888889998888999******************************************************875 PP

>> Hydrolase_4  Serine aminopeptidase, S33
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.6   0.2      0.03        68      15      94 ..     449     533 ..     437     546 .. 0.71
   2 !   19.3   0.0   2.4e-07   0.00053     186     233 ..     588     637 ..     578     641 .. 0.91

  Alignments for each domain:
  == domain 1  score: 2.6 bits;  conditional E-value: 0.03
  Hydrolase_4  15 ehsgryaelaeaLaaqGfavyalDhrG...hGrse.....gkrghvpsfddyvdDlaafvekvkeehpelplfllGhSmGGliallyl 94 
                    s  ++  ++ ++ +Gfav+ +D+ G   +Gr       g+   v ++dd+++ ++ +v++  ++   ++l + G S GG+++l++l
   KOO21191.1 449 AASTSFNANIQFFTSRGFAVLDVDYGGstgYGRDYrrrlrGAW-GVVDIDDVCAGAQYLVSEGLADP--KRLCIDGGSAGGYTTLSAL 533
                  567778888999************9651115665577553333.46777888888877776655333..2568889999999998876 PP

  == domain 2  score: 19.3 bits;  conditional E-value: 2.4e-07
  Hydrolase_4 186 raakitlPllllhGeaDkvvdpeasrelyerlgsk..dktlklypglyHe 233
                   +++++ P+lll+G++Dk+v+p++++ ++++l sk   + lk+y+g  H 
   KOO21191.1 588 AVDQLSCPILLLQGTEDKIVPPNQAELMHAALLSKglPCALKMYEGEQHG 637
                  567899***************************998899******99995 PP

>> Esterase_phd  Esterase PHB depolymerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   0.1       2.5   5.6e+03     169     183 ..     227     241 ..     215     243 .. 0.72
   2 !   18.2   0.1     6e-07    0.0013      77     197 ..     495     621 ..     416     629 .. 0.68

  Alignments for each domain:
  == domain 1  score: -3.4 bits;  conditional E-value: 2.5
  Esterase_phd 169 glpalvvqGdadtvv 183
                      +lv  Gd+dt v
    KOO21191.1 227 TTHTLVAGGDGDTSV 241
                   456899999999987 PP

  == domain 2  score: 18.2 bits;  conditional E-value: 6e-07
  Esterase_phd  77 eaavvvalvdalvdehrvdaarvyvaGlsaGaaladllalhypdvfaava.lhsGlalGeaadvisaldv.mr...rGlrqapaaavdalveagayp 168
                   + + v a ++ lv+e   d+ r+ + G saG+  + l al + dvf+a + l+    lG+ a     ++        G  ++  a  da++   a  
    KOO21191.1 495 DIDDVCAGAQYLVSEGLADPKRLCIDGGSAGG-YTTLSALAFRDVFTAGTsLYGVADLGTLAGDTHKFESrYLdglVGRYPEDKALYDARAPINAVD 590
                   44557888999*******************96.6789*********986515555568876655544443134111455677789999998777665 PP

  Esterase_phd 169 ..glpalvvqGdadtvvavknaeslvvalrr 197
                     + p l++qG  d++v +++ae + +al +
    KOO21191.1 591 qlSCPILLLQGTEDKIVPPNQAELMHAALLS 621
                   115699*****************99999876 PP

>> Abhydrolase_4  TAP-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.0       1.2   2.8e+03      32      53 ..     432     453 ..     407     482 .. 0.64
   2 !   15.4   0.0   6.6e-06     0.015      33      77 ..     592     640 ..     579     651 .. 0.77

  Alignments for each domain:
  == domain 1  score: -1.5 bits;  conditional E-value: 1.2
  Abhydrolase_4  32 kgaapvLllqnerDpaTPyega 53 
                     +a+p+Ll+++ + p+   ++ 
     KOO21191.1 432 DEATPPLLVKAHGGPTGAASTS 453
                    2359999999988876555544 PP

  == domain 2  score: 15.4 bits;  conditional E-value: 6.6e-06
  Abhydrolase_4  33 gaapvLllqnerDpaTPyegakklakalgg.a...vlvtvegeGHgala 77 
                     + p+Lllq++ D ++P+++a+ ++ al + +   +l ++ege Hg+ +
     KOO21191.1 592 LSCPILLLQGTEDKIVPPNQAELMHAALLSkGlpcALKMYEGEQHGFRQ 640
                    358************************9865466577788888888654 PP

>> Abhydrolase_1  alpha/beta hydrolase fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.0       1.2   2.6e+03       2      40 ..     438     476 ..     437     537 .. 0.60
   2 !   14.8   0.0   7.5e-06     0.017     206     250 ..     570     636 ..     530     638 .. 0.73

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 1.2
                    EEEEE-STTTCGGGGTTGHHHHHHHHTTSEEEEEEETTS CS
  Abhydrolase_1   2 vlvilhGlpgssdvwaerglapaLakdgfdvillDlrGv 40 
                    +lv  hG+p ++ +   ++ ++ +  +gf v+ +D  G+
     KOO21191.1 438 LLVKAHGGPTGAASTSFNANIQFFTSRGFAVLDVDYGGS 476
                    677779999877776666677777777888887777765 PP

  == domain 2  score: 14.8 bits;  conditional E-value: 7.5e-06
                    C..................THHHHSEEEEEEETTCSSSCHHHHHHHHHC.....HTSEEEEEEETCSS CS
  Abhydrolase_1 206 e..................lknvlaptlvisgtsDplvppkaledlaql.....lpkkrlvvisdagH 250
                                       +++ ++p+l+++gt+D++vpp++ e + ++     lp   l+ +++++H
     KOO21191.1 570 VgrypedkalydarapinaVDQLSCPILLLQGTEDKIVPPNQAELMHAAllskgLPC-ALKMYEGEQH 636
                    3444445555555666667888999***************99999988877666666.7777777777 PP

>> Abhydrolase_3  alpha/beta hydrolase fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.1   3.8e-05     0.086      49     209 ..     496     638 ..     494     640 .. 0.73

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 3.8e-05
                    HHHHHHHHHHHHHTHHHHTETTCEEEEEEETHHHHHHHHHHHHHHHTT---EEEEEEESE-SSTSSTTSHHHHHCHHTTTSSSSCHHHHHHHHHHH CS
  Abhydrolase_3  49 vedalaalrwlaeqawelgadpsrivlaGdSaGGnlaaavalrardegepkvagqvliyPvtdlertesesikkaeeladgplltraaldlfwrly 144
                    ++d+ a +++l+++     adp+r+++ G SaGG  ++  al++rd      ++   +y v dl +  ++++    +      ++ + ld ++  y
     KOO21191.1 496 IDDVCAGAQYLVSEG---LADPKRLCIDGGSAGGYTTLS-ALAFRDV----FTAGTSLYGVADLGTLAGDTH----K------FESRYLDGLVGRY 573
                    789999999999994...59**************86655.6688886....889999999999933333333....2......3344557777778 PP

                    SSGGGGGSTTTSGGGC.S-SST---EEEEEETT-TTH..HHHHHHHHHHHHTT--EEEEEETTEETTG CS
  Abhydrolase_3 145 lpeadrddplasplla.edlsglpptlvvvaefDplr..degeayaerlraagvevelieyegmvHgf 209
                     +++ + d +a p+ a ++ls  +p+l++ +++D +   +++e ++++l ++g ++ l+ yeg+ Hgf
     KOO21191.1 574 PEDKALYDARA-PINAvDQLS--CPILLLQGTEDKIVppNQAELMHAALLSKGLPCALKMYEGEQHGF 638
                    66666666655.476634576..667777677776552357888999999*****************9 PP

>> PAE  Pectinacetylesterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.1   6.1e-05      0.14     137     187 ..     504     553 ..     500     566 .. 0.90

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 6.1e-05
         PAE 137 edLlekglkkakkvlLsGcSAGglaailhcdklrellpkeakvkclsdaGf 187
                 ++L+++gl++ k++ + G+SAGg++++  +  +r+++ + +++ +++d G 
  KOO21191.1 504 QYLVSEGLADPKRLCIDGGSAGGYTTLSAL-AFRDVFTAGTSLYGVADLGT 553
                 6899********************997665.8**************99885 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (681 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       281  (0.0156729); expected 358.6 (0.02)
Passed bias filter:                      251  (0.0139997); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.58u 0.25s 00:00:00.83 Elapsed: 00:00:00.42
# Mc/sec: 4872.37
//
Query:       KOO21192.1  [L=252]
Description: condensin complex subunit smc1, partial [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    0.00062   19.6  10.1    0.00081   19.2  10.1    1.0  1  DUF1387       Protein of unknown function (DUF1387)
  ------ inclusion threshold ------
        4.3    7.3  28.0       0.85    9.6  21.1    2.2  2  YscO          Type III secretion protein YscO
        4.4    7.9   6.8        3.1    8.4   0.6    2.6  2  DUF16         Protein of unknown function DUF16
          6    5.9  12.8       0.59    9.2   1.1    2.1  2  FH2           Formin Homology 2 Domain


Domain annotation for each model (and alignments):
>> DUF1387  Protein of unknown function (DUF1387)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.2  10.1   1.8e-07   0.00081       8     174 ..      14     181 ..       9     187 .. 0.65

  Alignments for each domain:
  == domain 1  score: 19.2 bits;  conditional E-value: 1.8e-07
     DUF1387   8 knkkkKkkkkkqkeankeakdkektaekeseee....eglnglhvngsakdtesvdslsekldtasldakeleseesasaeteeke.selelqkaevel 101
                 k +k K+   k +e+ k+a++ +++ae++ ++     +++ +  +   ak+   ++sl+e+ld +slda e +s+++  +++   e se ++  + +  
  KOO21192.1  14 KSDKLKEDAAKAEEEAKKAREARAAAEAALKNAkrdlKAVADQTAAARAKEAAARESLEERLDFSSLDALERTSKPADFEKHLGAEiSEASRAIDAMTP 112
                 4556666666666666666666655555544445556899999999999***********************999998777644333555555566666 PP

     DUF1387 102 epklvaksesseaqqksakkqq.kneskpksrtssessvkasskkevktddvqessagkklgsnieksvKdLqr 174
                 + k++++ e+ ++   +++++    + k+ +++      ++s +++ ++  ++  s  k ++++i+   KdL +
  KOO21192.1 113 NMKAIEQYEEVQQRLLEVETEYmYDAVKASQKE-----ANSSFQNARNQRYSKFMSCFKVISESIDDKYKDLTQ 181
                 666666655554444444444424444444433.....333343444444455567789************976 PP

>> YscO  Type III secretion protein YscO
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6  21.1   0.00019      0.85      71     140 ..       4      73 ..       1      75 [. 0.94
   2 ?    2.0   0.6      0.04   1.8e+02      64      96 ..     113     145 ..      81     171 .. 0.51

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 0.00019
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
        YscO  71 vkqqvalLrekeaelekqveeakqqleaerealrqarkelqearraveKfaelarlvraeasrqqerkEe 140
                 + +++ l  ek+ +l++++++a+++++++rea ++a+++l++a+r ++ +a   +  ra +++ +e++Ee
  KOO21192.1   4 LEHKLRLAHEKSDKLKEDAAKAEEEAKKAREARAAAEAALKNAKRDLKAVADQTAAARAKEAAARESLEE 73 
                 678889999******************************************999999**99999999999 PP

  == domain 2  score: 2.0 bits;  conditional E-value: 0.04
                 -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
        YscO  64 llkelekvkqqvalLrekeaelekqveeakqql 96 
                 ++k++e++ +  + L e e e+  ++ +a q++
  KOO21192.1 113 NMKAIEQYEEVQQRLLEVETEYMYDAVKASQKE 145
                 444444444333333333333333333333322 PP

>> DUF16  Protein of unknown function DUF16
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.4   0.6   0.00068       3.1      37      90 ..       2      55 ..       1      63 [. 0.90
   2 ?    2.3   0.8     0.054   2.4e+02      31      53 ..     122     144 ..      69     184 .. 0.60

  Alignments for each domain:
  == domain 1  score: 8.4 bits;  conditional E-value: 0.00068
                HHHHHHHH...HHHHHHHHHHHHHHHHHHHHHHHHHHHHH.......HHHHHHH CS
       DUF16 37 kkieakvdklgeqinkleqkvekqgekikelkveqkaqgeelnkvdetlelile 90
                  +e+k++   e+ +kl++   k +e+ k+ ++   a +++l++ ++ l+ +++
  KOO21192.1  2 SALEHKLRLAHEKSDKLKEDAAKAEEEAKKAREARAAAEAALKNAKRDLKAVAD 55
                678999*************************************99999998875 PP

  == domain 2  score: 2.3 bits;  conditional E-value: 0.054
                 .BHHHHHHHHHHHH...HHHHHH CS
       DUF16  31 snkqrLkkieakvdklgeqinkl 53 
                 + +qrL ++e++ +   ++ ++ 
  KOO21192.1 122 EVQQRLLEVETEYMYDAVKASQK 144
                 23334444444333333333332 PP

>> FH2  Formin Homology 2 Domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.0   4.5      0.02        88     279     340 ..       2      63 ..       1      83 [. 0.86
   2 ?    9.2   1.1   0.00013      0.59     249     319 ..      96     165 ..      92     200 .. 0.78

  Alignments for each domain:
  == domain 1  score: 2.0 bits;  conditional E-value: 0.02
                 HHHHHHHHHHHHHHHHHHHHHHHCCTTSSTT-THHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
         FH2 279 eslekevkklekglkklekelessekkeepsdkflevlkeflkeaeeklkkleeelkeakel 340
                  +le++++  +++ +kl++++ + e+++++  + +++ +  lk+a+++lk + ++   a+++
  KOO21192.1   2 SALEHKLRLAHEKSDKLKEDAAKAEEEAKKAREARAAAEAALKNAKRDLKAVADQTAAARAK 63 
                 57899999999999999999999999999999999999999999999999999887776655 PP

  == domain 2  score: 9.2 bits;  conditional E-value: 0.00013
                 HHHHHHTTSGGGGGHHHHTTTHHHCCTS-HHHHHHHHHHHHHHHHHHHHHHHHCCTTSSTT-THHHHHHHH CS
         FH2 249 lvkiireklpevldfsseLknvkkaakvnleslekevkklekglkklekelessekkeepsdkflevlkef 319
                 l ++i+e+   ++ ++  +k++++  +v+   le e++ +++ +k+ +ke++ss + +  +++ ++ ++ f
  KOO21192.1  96 LGAEISEASRAIDAMTPNMKAIEQYEEVQQRLLEVETEYMYDAVKASQKEANSSFQ-NARNQRYSKFMSCF 165
                 55788999999999***************************************999.55555555555544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (252 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2538  (0.141558); expected 358.6 (0.02)
Passed bias filter:                      836  (0.0466284); expected 358.6 (0.02)
Passed Vit filter:                       101  (0.00563333); expected 17.9 (0.001)
Passed Fwd filter:                        17  (0.000948185); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.66u 0.29s 00:00:00.95 Elapsed: 00:00:00.46
# Mc/sec: 1642.46
//
Query:       KOO21193.1  [L=710]
Description: protein serine threonine kinase, partial [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    4.4e-36  124.6   0.0    6.8e-36  124.0   0.0    1.3  1  Pkinase        Protein kinase domain
    7.5e-15   54.9   0.0    1.7e-14   53.8   0.0    1.6  1  Pkinase_Tyr    Protein tyrosine kinase
    0.00016   21.1   0.9    0.00043   19.7   0.0    2.1  2  Kdo            Lipopolysaccharide kinase (Kdo/WaaP) family
  ------ inclusion threshold ------
       0.12   12.6   7.9       0.64   10.2   2.6    2.5  2  Fib_alpha      Fibrinogen alpha/beta chain family
        0.8    9.4  12.2      0.026   14.2   4.3    2.2  2  SHE3           SWI5-dependent HO expression protein 3
        2.8    6.7  36.6        1.7    7.4  10.0    3.2  3  Spc7           Spc7 kinetochore protein


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  124.0   0.0   2.3e-39   6.8e-36       4     213 ..      97     330 ..      94     387 .. 0.85

  Alignments for each domain:
  == domain 1  score: 124.0 bits;  conditional E-value: 2.3e-39
                 EEEEEE.ESSEEEEEEEETTTTEEEEEEEEECHCHCHHHH..HHHHHHHHHHHHHS.CTTB--EEEEEEESSEEEEEEE--TTEBHHHHHH.HHSS--H CS
     Pkinase   4 leklGe.GsfGkVykaveketgkivAvKkikkekakkkke..kkvlrEikilkklk.hpnivrlyevfeekdelylvleyveggeladlle.rkgslse 97 
                 +++lG+ G++++Vy+a++++++  v++K+++ e ++++++   k+ +E+  l+++  h++i +l +++ +++++ l ++ ++++ l +l+e r g l+e
  KOO21193.1  97 HRQLGQeGQMSTVYQARRHSDDANVVLKVLNLEMIRESERalLKACAEVGALRTIApHMHISQLHGILCTPSQIALTFDAIDTD-LLSLIEeRGGRLQE 194
                 6889955*****************************999988899*************************************88.55555537777*** PP

                 HHHHHHHHHHHHHHHHHHHTTEE-SS-SGGGEEEETTTE.......EEE-SGTTSEESSSSCS.BCTTTSCGGGS-HHHH............TTSCBSH CS
     Pkinase  98 eeakkiakqilegleylHskgiiHrDlKpeNiLidekge.......lKitDFGlakelesssk.ltsfvgtseYlAPEvl............keneysk 176
                 ++ + +++q+++++++lH  g  HrDlKpe + + ++g         +++DFG a++   ++  l+ f gt+ Y+APEv                +y+ 
  KOO21193.1 195 KDGRLLFRQVATAVAHLHGLGWAHRDLKPEHVGLARTGSgpssswcCRLVDFGEAARCVIGEAsLSGFRGTPLYMAPEVAawyrgqtsfgvaAPPSYGV 293
                 ********************************999998899999*********99887776666****************9999877666655599*** PP

                 HHHHHHHHHHHHHHHHSS-STTTSSHHHHHHHHHHTH CS
     Pkinase 177 kvDvWslGvilyelltgkppfsgekgkekvekeldql 213
                 ++D WslGv+ly +l+g+ p++++ g  +  + ++++
  KOO21193.1 294 ECDCWSLGVTLYVMLSGESPWNQDVGLPELIASIRTV 330
                 **********************888877766666662 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.8   0.0   5.6e-18   1.7e-14       3     208 ..      96     316 ..      94     351 .. 0.86

  Alignments for each domain:
  == domain 1  score: 53.8 bits;  conditional E-value: 5.6e-18
                  EEEEEE.EESSEEEEEEEEETTTTSSEEEEEEEEESTTSSHHHHHHHHH...HHHHHHTS.-BTTB--EEEEEESSSSEEEEEE--TTEBHHHHHHHT CS
  Pkinase_Tyr   3 lgkklG.eGafGkVvegtlkgekekkevkVavKtlkeeateeekeelle...eakimkkl.khpnivkllgvctkeepllivteyvkgGdLlkfLrkk 95 
                  ++++lG eG+ ++V++++ +    +++ +V++K+l+ e+ +e++++ll+   e+  ++++  h +i +l+g+    +++ + ++ ++  dLl+ ++++
   KOO21193.1  96 IHRQLGqEGQMSTVYQARRH----SDDANVVLKVLNLEMIRESERALLKacaEVGALRTIaPHMHISQLHGILCTPSQIALTFDAIDT-DLLSLIEER 188
                  67888845**********99....8899*******9888777777776555599******************9999999999998875.99999**99 PP

                  CTTTSBHHHHHHHHHHHHHHHHHHHHTTEEEST-SGGGEEEEE.......TTEEEE-STTTHEETTTSSEEEETTSSTSGGGGS-HHHHHHSE..... CS
  Pkinase_Tyr  96 ekekltlkdllsfalqvAkGmeyLeskklvHrdlaarNvLlse.......nkvvkisDfGLardiekddeyvkkeeaklpvkWmapEslkekk..... 181
                     +l+ kd   +  qvA ++++L+     Hrdl    v l++       + ++++ DfG a +     e  + ++ +    +mapE+    +     
   KOO21193.1 189 -GGRLQEKDGRLLFRQVATAVAHLHGLGWAHRDLKPEHVGLARtgsgpssSWCCRLVDFGEAARCVIG-E-ASLSGFRGTPLYMAPEVAAWYRgqtsf 283
                  .**************************************9998899998788********99888333.3.33445566667******998888899* PP

                  .......EEHHHHHHHHHHHHHHHHTTSSGTTTT CS
  Pkinase_Tyr 182 .......ftsksDvWsfGvllwEiftlgespypg 208
                         + ++ D Ws Gv+l+ +++ gesp+++
   KOO21193.1 284 gvaappsYGVECDCWSLGVTLYVMLS-GESPWNQ 316
                  **********************9999.****865 PP

>> Kdo  Lipopolysaccharide kinase (Kdo/WaaP) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.7   0.0   1.5e-07   0.00043     115     170 ..     192     250 ..     178     257 .. 0.81
   2 ?   -2.5   1.0       0.9   2.7e+03      97     134 ..     361     399 ..     339     406 .. 0.65

  Alignments for each domain:
  == domain 1  score: 19.7 bits;  conditional E-value: 1.5e-07
         Kdo 115 laeelkrallkavgrliaklhragvnHadlyaknillqqee...eeeaeiwliDldkar 170
                 l+e+  r l+++v++++a lh +g+ H+dl + ++ l  ++   +    + l+D+  a+
  KOO21193.1 192 LQEKDGRLLFRQVATAVAHLHGLGWAHRDLKPEHVGLARTGsgpSSSWCCRLVDFGEAA 250
                 5666777889*************************888877677777888899997665 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 0.9
         Kdo  97 erlega.qdLedllakwaelaeelkrallkavgrliakl 134
                 ++l+ a q L++  ++ ++ +++ ++a+  a g ++a+ 
  KOO21193.1 361 RELARAqQALAEAQQQTSQAQQQATEAQAAAAGLAAADV 399
                 444444145777777766677777777777766655544 PP

>> Fib_alpha  Fibrinogen alpha/beta chain family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.7   0.2     0.011        33      31      86 ..     329     384 ..     319     397 .. 0.70
   2 ?   10.2   2.6   0.00021      0.64      37     133 ..     431     530 ..     419     531 .. 0.76

  Alignments for each domain:
  == domain 1  score: 4.7 bits;  conditional E-value: 0.011
                 CCCCHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
   Fib_alpha  31 kdvkkdlekleneleeisnstkeaeelvkeikdslrekqkskkdndnvikksskel 86 
                 +  +++le+++++l++ +  ++ a+e   e +  l+++q+  ++ ++ +++ +++ 
  KOO21193.1 329 TVETDELESMRERLRKSRAAETAASERGAEAMRELARAQQALAEAQQQTSQAQQQA 384
                 5556789999****999988888887766666666666666666677666666654 PP

  == domain 2  score: 10.2 bits;  conditional E-value: 0.00021
                 HCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH...HHHHHHHHHHHHHCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT CS
   Fib_alpha  37 lekleneleeisnstkeaeelvkeikdslrekqkskkdn...dnvikksskeleeeilrlketidaqesnirvLqnvlesneqkiqkLeqdidqkerkC 132
                 ++ + +e+++  ++  e e++  +++  l+ k +  + +   ++ +k+s++ le e ++l+++ ++   +  +L   l++ e ++q+L+ + ++++++C
  KOO21193.1 431 MAPMLHEIASRDERIAELEHVEAQLRLELQTKRQRIAASertSEELKQSTEVLEAEASELRAKWQQGSLRCSALEVSLQRAEAEVQRLQHAFAALQEDC 529
                 5555555555556666666666666655555444433332448899***************************************************** PP

                 T CS
   Fib_alpha 133 k 133
                 +
  KOO21193.1 530 N 530
                 6 PP

>> SHE3  SWI5-dependent HO expression protein 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   1.0      0.36   1.1e+03      53     101 ..     331     379 ..     320     392 .. 0.45
   2 ?   14.2   4.3   8.7e-06     0.026      45     134 ..     443     539 ..     435     594 .. 0.82

  Alignments for each domain:
  == domain 1  score: -0.8 bits;  conditional E-value: 0.36
                 HHHHHHHHHHHHHHHHHHHHHHHHHH.HHHHHHHHHHHHHHHHHHHHCCC CS
        SHE3  53 ENdnLsslLkRKerrlkdlekelsel.kesveelklekkqlkkrlenssa 101
                 E d L s+ +R  r+ +  e+  se   e + el+  +++l +  +++s+
  KOO21193.1 331 ETDELESMRERL-RKSRAAETAASERgAEAMRELARAQQALAEAQQQTSQ 379
                 555555555542.3344444444443123344444444444433333332 PP

  == domain 2  score: 14.2 bits;  conditional E-value: 8.7e-06
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHH.......HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
        SHE3  45 enlaslkhENdnLsslLkRKerrlkdlekelselkesveelklekkqlkkrlenssase.......teleeelerlkvqYdalvdsqkeYkehYqqe 134
                 e +a+l h   +L   L+ K +r+   e+  +elk+s e l++e  +l+ ++++ s +        ++ e+e++rl+  + al + ++  +e+   e
  KOO21193.1 443 ERIAELEHVEAQLRLELQTKRQRIAASERTSEELKQSTEVLEAEASELRAKWQQGSLRCsalevslQRAEAEVQRLQHAFAALQEDCNLLQERLTGE 539
                 789**********************************************999986544301111115567889999999999988888777766555 PP

>> Spc7  Spc7 kinetochore protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.4  10.0   0.00057       1.7     191     262 ..     325     393 ..     318     409 .. 0.84
   2 ?    6.1  12.0    0.0015       4.5     166     259 ..     428     517 ..     401     520 .. 0.76
   3 ?    4.8   3.3    0.0037        11     161     237 ..     507     583 ..     503     597 .. 0.80

  Alignments for each domain:
  == domain 1  score: 7.4 bits;  conditional E-value: 0.00057
        Spc7 191 eelesidkeeLeelreelaelkaeieekkkelaelqeqleeleekieelkeqkseleeeiaeaervleeckg 262
                 +++ +++ +eLe++re+l++  a   + +++ ae  ++l++ +++++e+++q s+++++  ea+       g
  KOO21193.1 325 ASIRTVETDELESMRERLRKSRAAETAASERGAEAMRELARAQQALAEAQQQTSQAQQQATEAQAAAA---G 393
                 56778999***************9999****************************9999999887654...5 PP

  == domain 2  score: 6.1 bits;  conditional E-value: 0.0015
        Spc7 166 dellpeleeekaeleeeleklqeaaeelesidkeeLeelreelaelkaeieekkkelaelqeqleeleekieelkeqkseleeeiaeaervlee 259
                 del+  + +e a+  e++++l+     +e+  + eL++ r+++a+ + + ee+k+ ++ l+++  el++k+++ + ++s le  +++ae  +++
  KOO21193.1 428 DELMAPMLHEIASRDERIAELEH----VEAQLRLELQTKRQRIAASERTSEELKQSTEVLEAEASELRAKWQQGSLRCSALEVSLQRAEAEVQR 517
                 44444444444444444444444....33445889*****************************************************998775 PP

  == domain 3  score: 4.8 bits;  conditional E-value: 0.0037
        Spc7 161 qeeeldellpeleeekaeleeeleklqeaaeelesidkeeLeelreelaelkaeieekkkelaelqeqleeleekie 237
                 + + +++ +++l++ +a+l+e  + lqe+ +  +  d++ +e+l  ela+l    e   + + e +++ e+l+++ +
  KOO21193.1 507 SLQRAEAEVQRLQHAFAALQEDCNLLQERLTGEAPGDSTMVEALDAELATLRLRREVEAALIGEHEREHEQLRARHN 583
                 55666777889999999999999999998888888899999999999999999999999999999999998887764 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (710 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1968  (0.109766); expected 358.6 (0.02)
Passed bias filter:                      630  (0.0351386); expected 358.6 (0.02)
Passed Vit filter:                       112  (0.00624686); expected 17.9 (0.001)
Passed Fwd filter:                        44  (0.00245412); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 1.02u 0.31s 00:00:01.33 Elapsed: 00:00:00.46
# Mc/sec: 4680.57
//
Query:       KOO21194.1  [L=328]
Description: hypothetical protein Ctob_003592 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (328 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       445  (0.0248201); expected 358.6 (0.02)
Passed bias filter:                      413  (0.0230353); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.46u 0.22s 00:00:00.68 Elapsed: 00:00:00.39
# Mc/sec: 2507.99
//
Query:       KOO21195.1  [L=99]
Description: hypothetical protein Ctob_003595 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
  ------ inclusion threshold ------
      0.014   15.8   0.7      0.023   15.2   0.3    1.5  2  Spectrin         Spectrin repeat
      0.027   14.5   0.6       0.12   12.4   0.6    1.8  1  PilJ             Type IV pili methyl-accepting chemotaxis tra
       0.04   13.9   0.5      0.048   13.7   0.5    1.1  1  DUF892           Domain of unknown function (DUF892)
      0.085   11.8   0.1      0.091   11.7   0.1    1.0  1  DUF913           Domain of Unknown Function (DUF913)
       0.35   10.7   3.6        3.8    7.4   0.1    2.6  3  PhdYeFM_antitox  Antitoxin Phd_YefM, type II toxin-antitoxin 


Domain annotation for each model (and alignments):
>> Spectrin  Spectrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.2   0.3   6.4e-06     0.023       3      38 ..       2      38 ..       1      49 [. 0.83
   2 ?   -1.9   0.0       1.3   4.7e+03      58      58 ..      76      76 ..      55      95 .. 0.55

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 6.4e-06
                HHHHHHHHHHHHHHHHHHHHHHCCSSC.SSSHHHHHH CS
    Spectrin  3 lqqfaqdadeleeWieekeellssedl.gkdleevqa 38
                +q++ ++++ele+W+ee e  ++s  +   ++e+v +
  KOO21195.1  2 QQELDKHVSELEQWLEELEGSAESSKYlLASVEAVMD 38
                6999******************999886666666655 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 1.3
                H CS
    Spectrin 58 k 58
                 
  KOO21195.1 76 V 76
                1 PP

>> PilJ  Type IV pili methyl-accepting chemotaxis transducer N-term
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.6   3.4e-05      0.12      44      96 ..       2      56 ..       1      93 [. 0.67

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 3.4e-05
        PilJ 44 raqlretiaqfdrtlaalrlgdpapgllvpaeavraqleaveqlWqelkkpa....e 96
                +++l++++++++++l++l+ ++++   +  a +v a +++v  +  + +k++    +
  KOO21195.1  2 QQELDKHVSELEQWLEELEGSAESS-KYLLA-SVEAVMDEVCMHDPATRKAVlipvA 56
                589***************9998885.55555.7777777777776666666644441 PP

>> DUF892  Domain of unknown function (DUF892)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.5   1.3e-05     0.048      45     130 ..       3      83 ..       2      96 .. 0.77

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 1.3e-05
                 HHHHHHHHHHHHHHHHTT-------.-HHHHTTT---------.--THHHHHHH...HHHHHHHHHHHHHHHHHHHHHCTT-HHHHH CS
      DUF892  45 eeTegqierLeqvferlgesasekkcdamegliaegqelieea.aedeslkdaaliaaaqavehyEiAsYgtLialAeqlgekeaak 130
                 +e  +++ +Leq +e+l+ sa+  k      l+a ++++++e  + d +++ a+li  a  +   + A  + +  +A+ +  + aa+
  KOO21195.1   3 QELDKHVSELEQWLEELEGSAESSK-----YLLASVEAVMDEVcMHDPATRKAVLIPVAEVYAEVQEAVLRRVS-AAKLVTADRAAA 83 
                 57789***************99999.....788888888887624566799*****999999999988888764.455555555554 PP

>> DUF913  Domain of Unknown Function (DUF913)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.1   2.5e-05     0.091     212     269 ..      25      84 ..       5      98 .. 0.75

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 2.5e-05
      DUF913 212 sdgdlasnlGssfdELvRhhpsLktaiikavikmlarvvelgkeka..akllvedassas 269
                 s + l +++   +dE + h p+ ++a++  v +++a+v+e   +    akl++ d++ a+
  KOO21195.1  25 SSKYLLASVEAVMDEVCMHDPATRKAVLIPVAEVYAEVQEAVLRRVsaAKLVTADRAAAK 84 
                 666778888899***************************999888778999998832222 PP

>> PhdYeFM_antitox  Antitoxin Phd_YefM, type II toxin-antitoxin system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.1      0.45   1.6e+03      44      51 ..      11      18 ..       8      40 .. 0.55
   2 ?    3.9   0.4     0.013        46      22      54 ..      35      68 ..      26      81 .. 0.67
   3 ?    7.4   0.1    0.0011       3.8      33      47 ..      79      93 ..      77      97 .. 0.91

  Alignments for each domain:
  == domain 1  score: -1.0 bits;  conditional E-value: 0.45
                     HHHHHHH. CS
  PhdYeFM_antitox 44 eyerlqel 51
                     e+e+++e+
       KOO21195.1 11 ELEQWLEE 18
                     45555553 PP

  == domain 2  score: 3.9 bits;  conditional E-value: 0.013
                     HHT-EEEEEETTEEEEEEEEH.HHHHHHHH.HHH CS
  PhdYeFM_antitox 22 egeepviItrrGkpvaVlvsl.eeyerlqeltek 54
                     +  ++v+  +    +aVl+++ e y   qe+ ++
       KOO21195.1 35 AVMDEVCMHDPATRKAVLIPVaEVYAEVQEAVLR 68
                     555556666666789******8888888885443 PP

  == domain 3  score: 7.4 bits;  conditional E-value: 0.0011
                     TEEEEEEEEHHHHHH CS
  PhdYeFM_antitox 33 GkpvaVlvsleeyer 47
                     ++++a lvs+++ye+
       KOO21195.1 79 DRAAAKLVSADDYES 93
                     5899*********97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (99 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1063  (0.0592894); expected 358.6 (0.02)
Passed bias filter:                      728  (0.0406046); expected 358.6 (0.02)
Passed Vit filter:                        65  (0.00362541); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.40u 0.26s 00:00:00.66 Elapsed: 00:00:00.41
# Mc/sec: 731.66
//
Query:       KOO21196.1  [L=275]
Description: hypothetical protein Ctob_003594 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (275 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       271  (0.0151152); expected 358.6 (0.02)
Passed bias filter:                      172  (0.0095934); expected 358.6 (0.02)
Passed Vit filter:                         9  (0.00050198); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.25s 00:00:00.63 Elapsed: 00:00:00.39
# Mc/sec: 2134.67
//
Query:       KOO21197.1  [L=560]
Description: zeaxanthin epoxidase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.5e-17   63.9   0.0    2.1e-07   30.5   0.0    2.7  2  FAD_binding_3  FAD binding domain
    7.7e-05   22.1   0.1     0.0033   16.7   0.0    2.2  2  Pyr_redox_2    Pyridine nucleotide-disulphide oxidoreductase
    0.00051   19.2   0.1    0.00083   18.5   0.1    1.3  1  FAD_binding_2  FAD binding domain
    0.00064   19.4   0.7     0.0065   16.1   0.7    2.1  1  DAO            FAD dependent oxidoreductase
     0.0015   18.8   0.1     0.0035   17.5   0.1    1.6  1  NAD_binding_8  NAD(P)-binding Rossmann-like domain
  ------ inclusion threshold ------
      0.026   13.8   0.1      0.044   13.1   0.1    1.3  1  AlaDh_PNT_C    Alanine dehydrogenase/PNT, C-terminal domain
      0.033   12.9   0.0      0.094   11.4   0.1    1.6  2  HI0933_like    HI0933-like protein
      0.064   12.3   0.1       0.11   11.6   0.1    1.3  1  GIDA           Glucose inhibited division protein A


Domain annotation for each model (and alignments):
>> FAD_binding_3  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.5   0.0   9.6e-11   2.1e-07       3     172 ..      48     240 ..      46     252 .. 0.72
   2 !   30.0   0.0   1.3e-10     3e-07     262     321 ..     363     422 ..     351     435 .. 0.86

  Alignments for each domain:
  == domain 1  score: 30.5 bits;  conditional E-value: 9.6e-11
                    EEEEE--SHHHHHHHHHHHHTTHHEEEEESSSSSCCSSS--EEEHHHHHHHHH......TT-HHHHHHHSEECCCCEEEEEEE.......CCCC.. CS
  FAD_binding_3   3 dVlIVGaGpaGlmlallLseaGvrvvlvekrsttvvlpradglnqrtmellrq......lGledrilaegapnelmgealyne.......lsdt.. 83 
                    +V+I G+G  Gl+++l + +aG +v+l ek ++ ++ +    + +  + +l+       + + +++  +g+++ ++++ l+++       +     
     KOO21197.1  48 KVVIAGGGVGGLTTSLAMLKAGFDVTLYEKTQKYARFGGPIQFASNALSTLKAidenlfARVMEKFTFTGTRRCGIKDGLRADgtfrmtnV--Adp 141
                    79*******************************9999955555555555555411122245555555555555555555444466554441..044 PP

                    .............CEEEEEHH......CH.HCST-CEE--HHHHHHHHHHHHHHHTEEETCSEE.EECCEECCCCCCCEEEECCTTEEEEEEEEEE CS
  FAD_binding_3  84 .............pkaradle......le.sspervtvypqteleriLvehaeerglqvrfkte.vesleqdeegvtaevrdketgeeetvrakYl 158
                                        e      ++ ++ +++ v++ ++l+ iLve+ ++   ++  +   v + e++ egv+ +++d +     t++a+ l
     KOO21197.1 142 kylidpgvpadwyL------EfplrqcADfFQLPYTGVINRPDLQEILVEECRKLKPDFLVNGApVAAYENTPEGVSVRLKDGT-----TISADVL 226
                    55555454444442......3444444566999******************99998666655444*************999994.....9****** PP

                    EE--GTT-HHHHHH CS
  FAD_binding_3 159 vGaDGgrStvrktl 172
                    vG DG +S+vr+++
     KOO21197.1 227 VGSDGIWSAVRAQM 240
                    ***********986 PP

  == domain 2  score: 30.0 bits;  conditional E-value: 1.3e-10
                    EEEEEEEEEEEEEEEEESSSEETTEEE-GGGTEEE-STTSHHHHHHHHHHHHHHHHHHHH CS
  FAD_binding_3 262 dveieevsawtvaqrvaekyrkgrvflaGDAaHihpPtgGqGlNtaiqDavnLawkLaav 321
                     + +e+   ++ +  + +++ +g   l+GDA+H + P  GqG   ai+Da++L ++L ++
     KOO21197.1 363 AAAVEQRDLYDRWPELFRSWADGSAVLVGDAVHPMMPNLGQGGCQAIEDAFELTKALKEA 422
                    45778888899999999***************************************9753 PP

>> Pyr_redox_2  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.0   1.5e-06    0.0033       2      39 ..      48      85 ..      47     134 .. 0.80
   2 ?    3.2   0.0      0.02        44     188     237 ..     182     232 ..     175     253 .. 0.75

  Alignments for each domain:
  == domain 1  score: 16.7 bits;  conditional E-value: 1.5e-06
                 SEEEE--SHHHHHHHHHHHHHTS-EEEEETTHCHHHCS CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2  2 dvvviGgGpAGlaaaltlaqagakvtlvelegtclngg 39
                 +vv+ GgG++Gl+++l + +ag++vtl+e+++    +g
   KOO21197.1 48 KVVIAGGGVGGLTTSLAMLKAGFDVTLYEKTQKYARFG 85
                 79**************************8554444333 PP

  == domain 2  score: 3.2 bits;  conditional E-value: 0.02
                  HHHHHHHHTTEEEEESCEEEEEEETTE.EEEEEETTSCEEEESEEEE-S-E CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2 188 aleealekeGvevklgtsvkeidgnge.klevvledgeeidadlvvvavGv 237
                  +l e+ +k + ++ ++  ++++ +n+   ++v l+dg++i ad +v + G+
   KOO21197.1 182 ILVEECRKLKPDFLVNGAPVAAYENTPeGVSVRLKDGTTISADVLVGSDGI 232
                  5555566666666666666555555555899**************988875 PP

>> FAD_binding_2  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.5   0.1   3.7e-07   0.00083       2      49 ..      49      92 ..      48     109 .. 0.80

  Alignments for each domain:
  == domain 1  score: 18.5 bits;  conditional E-value: 3.7e-07
                   EEEE--SHHHHHHHHHHHHTTT-EEEEESSSGGGSGGGG--S-EE-TT CS
  FAD_binding_2  2 viViGsGlAGLaAAleaaeaGlkvavvekeqefggatawsqGgidavl 49
                   v++ G+G++GL+ +l++ +aG +v++ ek+q+     a  +G i++++
     KOO21197.1 49 VVIAGGGVGGLTTSLAMLKAGFDVTLYEKTQK----YARFGGPIQFAS 92
                   9*****************************97....444455555555 PP

>> DAO  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.7   2.9e-06    0.0065       1     208 [.      48     239 ..      48     312 .. 0.54

  Alignments for each domain:
  == domain 1  score: 16.1 bits;  conditional E-value: 2.9e-06
                 EEEEECTSHHHHHHHHHHHHTT..EEEEESSSSTTSSGGGSSEEEEESSSSTHHSTHHHH.HHHHHHHHHH.HHHHHHHSSTTSEEEEEEEEEESSHHH CS
         DAO   1 dvviiGGGiiGlstAyeLarrg..VtllekgdiagsgaSgrnsgllhsglrylpeasela.rlslealeel.releeelgididyrrtGllslaadeee 95 
                 +vvi GGG+ Gl+t ++  ++g  Vtl+ek    +     r +g +  +   l    ++   l ++ +e +     ++ gi+ ++r  G+  ++ +   
  KOO21197.1  48 KVVIAGGGVGGLTTSLAMLKAGfdVTLYEKTQKYA-----RFGGPIQFASNALSTLKAIDeNLFARVMEKFtFTGTRRCGIKDGLRADGTFRMT-N--- 137
                 59****************************97766.....777777554322221101111222222222211111222333333333333332.1... PP

                 HHHHHHHHHHHHHTTTTE.EEEEHHHHHHHSTTST.TTSEEEE.ETTEEEEEHHHHHHHHHHHHHHTT-EE.EESECEEEEEEEETCEEEEE.EECTEE CS
         DAO  96 lealdkllallleaglda.elldaeevrelepalp.gllgalf.ypdtgqvdpakltaalaraaealGvei.legtevtgleeedgkvwgve.rttpge 189
                                +d  +l+d+   ++++   p + ++ +f  p tg+++   l   l +++++l  ++ ++g++v + e++     gv  r ++g+
  KOO21197.1 138 --------------VADPkYLIDPGVPADWYLEFPlRQCADFFqLPYTGVINRPDLQEILVEECRKLKPDFlVNGAPVAAYENT---PEGVSvRLKDGT 219
                 ..............1122124444322233311112223444448888888888888888888888887651466888887664...333333455566 PP

                 EEEEEEEEE--GGGHH.HHH CS
         DAO 190 ndaadavVnaaGawsd.llg 208
                 + +ad +V + G+ws   ++
  KOO21197.1 220 TISADVLVGSDGIWSAvRAQ 239
                 64457788888888764433 PP

>> NAD_binding_8  NAD(P)-binding Rossmann-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5   0.1   1.6e-06    0.0035       1      29 [.      51      79 ..      51      90 .. 0.90

  Alignments for each domain:
  == domain 1  score: 17.5 bits;  conditional E-value: 1.6e-06
                   EE--SHHHHHHHHHHHCCTEEEEEE-SSS CS
  NAD_binding_8  1 IvGaGlsGlvaAylLakagfdvlllekrd 29
                   I G+G++Gl++  ++ kagfdv+l+ek +
     KOO21197.1 51 IAGGGVGGLTTSLAMLKAGFDVTLYEKTQ 79
                   67************************975 PP

>> AlaDh_PNT_C  Alanine dehydrogenase/PNT, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.1   1.9e-05     0.044      16      63 ..      34      81 ..      21     112 .. 0.83

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 1.9e-05
                 EEETTCEETCB---EEEEESTSHHHHHHHHHHHHTT-EEEEEESSHHH CS
  AlaDh_PNT_C 16 kgtlaGgvpgvepakvlviGgGvaGlqAiatakglgakVtvlDvrpar 63
                 + ++a  ++ v p kv++ GgGv Gl    +  + g +Vt++++ ++ 
   KOO21197.1 34 RCVAAPCMQAVPPLKVVIAGGGVGGLTTSLAMLKAGFDVTLYEKTQKY 81
                 668888899999***************99999999*****99987765 PP

>> HI0933_like  HI0933-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.1   4.2e-05     0.094       2      37 ..      48      83 ..      47      84 .. 0.94
   2 ?   -2.0   0.0      0.49   1.1e+03     112     161 ..     180     229 ..     177     236 .. 0.75

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 4.2e-05
                 SEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSS-H CS
  HI0933_like  2 dviviGgGaAGlmaAisaakrgkrVlllekakklgr 37
                 +v++ GgG  Gl +++++ k+g +V+l+ek++k +r
   KOO21197.1 48 KVVIAGGGVGGLTTSLAMLKAGFDVTLYEKTQKYAR 83
                 79*****************************99875 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 0.49
                  HHHHHHHHHHHT-EEE-S--.EEEEECETTE.EEEEE.TTEEEEESEEEE- CS
  HI0933_like 112 vdallkelkeagvklrlete.vksvekeedgkfrvktkseeeleadklvlA 161
                   ++l++e+++ + ++ ++ + v++ e+ + + ++v++k++++++ad lv +
   KOO21197.1 180 QEILVEECRKLKPDFLVNGApVAAYEN-TPEGVSVRLKDGTTISADVLVGS 229
                  578999999999998877651555555.55559****99*****9999865 PP

>> GIDA  Glucose inhibited division protein A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.1   4.8e-05      0.11       1      35 [.      48      84 ..      48     105 .. 0.82

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 4.8e-05
                CEEEE-SSHHHHHHHHHHHHTT--EEEE..ES-GGGT CS
        GIDA  1 dviViGgGhAGceAAlaaarlGakvlLi..thkldti 35
                +v++ GgG  G+  +la+ ++G++v+L+  t+k+ ++
  KOO21197.1 48 KVVIAGGGVGGLTTSLAMLKAGFDVTLYekTQKYARF 84
                6999************************554444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (560 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       310  (0.0172904); expected 358.6 (0.02)
Passed bias filter:                      291  (0.0162307); expected 358.6 (0.02)
Passed Vit filter:                        48  (0.00267723); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.53u 0.25s 00:00:00.78 Elapsed: 00:00:00.39
# Mc/sec: 4285.73
//
Query:       KOO21198.1  [L=320]
Description: hypothetical protein Ctob_003596 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.13   12.0   1.4       0.46   10.2   1.4    1.8  1  DUF3553   Protein of unknown function (DUF3553)


Domain annotation for each model (and alignments):
>> DUF3553  Protein of unknown function (DUF3553)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   1.4   2.6e-05      0.46      12      34 ..     198     228 ..     184     233 .. 0.69

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 2.6e-05
     DUF3553  12 qpdWGlGqV........qSaiagrvtvnFen 34 
                 +p+ G+G+V        + + ag+vtv+Fe 
  KOO21198.1 198 EPETGWGSVnkdmigtvKEVKAGKVTVDFEG 228
                 56656666655555555************94 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (320 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1025  (0.0571699); expected 358.6 (0.02)
Passed bias filter:                      629  (0.0350828); expected 358.6 (0.02)
Passed Vit filter:                        62  (0.00345808); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.50u 0.28s 00:00:00.78 Elapsed: 00:00:00.43
# Mc/sec: 2228.77
//
Query:       KOO21199.1  [L=957]
Description: hypothetical protein Ctob_003599 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (957 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2693  (0.150204); expected 358.6 (0.02)
Passed bias filter:                      501  (0.0279436); expected 358.6 (0.02)
Passed Vit filter:                       162  (0.00903564); expected 17.9 (0.001)
Passed Fwd filter:                        76  (0.00423894); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 2.81u 0.40s 00:00:03.21 Elapsed: 00:00:00.72
# Mc/sec: 4031.03
//
Query:       KOO21200.1  [L=356]
Description: tryptophanyl-tRNA synthetase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.4e-62  211.7   0.0    2.8e-62  210.7   0.0    1.5  1  tRNA-synt_1b  tRNA synthetases class I (W and Y)


Domain annotation for each model (and alignments):
>> tRNA-synt_1b  tRNA synthetases class I (W and Y)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  210.7   0.0   1.5e-66   2.8e-62      18     292 ..       2     300 ..       1     301 [. 0.93

  Alignments for each domain:
  == domain 1  score: 210.7 bits;  conditional E-value: 1.5e-66
                   -BGG.GHHHHHHHHHHHHTTSEEEEEEEHHHHHTTTTT-SSHHHHHHHHHHHHHHHHHHHHHTCHTTTEEEEETHHHHTTHHHHHHHHHHH.TTCBH CS
  tRNA-synt_1b  18 lHlG.ylvplkklvelqkaghevffliaDlhAiigdpskaeerklrkreevlenaikaqlakgldpekaevvlqsewlehlelaellrdlg.klgsl 112
                   lHlG yl++++++v+ q + ++ +f+++DlhAi+ +++   +++l k++ +++++   +la+g+dpe++++++qs++ +h el+   +    ++   
    KOO21200.1   2 LHLGnYLGAIRQWVANQ-ELYDNYFCVVDLHAITAPHT---PKELTKDTYRTAAL---YLASGIDPEQSRIFVQSHVTAHAELTVAAQLARrPWAGS 91 
                   8****************.********************...**************...************************998776654146667 PP

                   HHHHHHHHCCHHCSSS.........................C--BHHHHHHHHHHHHHHHHTCHSEEEEEGGGHHHHHHHHHHHHHHHHH....... CS
  tRNA-synt_1b 113 nrmlqfksvkkrleeg.........................egislgeftYplLqaaDilllkadlvpgGsDQkqnielgrdlarrfnkk....... 177
                   +r +q+k+  k++++g                         +++s+g+f Yp+L+aaDill++++lvp+G+DQ+q++el+rd+arrfn++       
    KOO21200.1  92 RRSIQYKE--KSAKQGansesvrrilyscspaiaadrtvvaRQVSVGLFDYPVLMAADILLYQTQLVPVGEDQRQHLELTRDIARRFNDQycknker 186
                   78888888..777774478899*******************99****************************************************** PP

                   STTSS-EEEEET....-BBSTTSSSBTTCETTC..GC-BTTCCHHHHHHHHHHCHCSTTCSHHHHHHHHHTHHHCHHHHHHHHCCSEEESSHHHHHH CS
  tRNA-synt_1b 178 evfkkpegltvp....lltgldGekKmSKSagn..saIfLddekesvkkkiqkavtdsdeevekllklktelsnelierleavsgkkpkreaeella 268
                   ++f +pe+l+v+    ++++ dG  KmSKSa+n  s+I+L+d ++ + +ki++++tds +++ +++  ++e  n l+ ++ea+sg++      e++ 
    KOO21200.1 187 KTFVEPEALIVKsnarVMSLQDGSAKMSKSAENdmSRINLLDPPDVIAQKIKRCKTDSVKGLSYDPA-RPEAVN-LLGIYEAMSGRSR----AEVEL 277
                   ************************************************************9998875.677777.7***********9....88888 PP

                   HHHCCCCHHHHHHHHHHHHHHHHH CS
  tRNA-synt_1b 269 eevtklvhggdlkkalaealnell 292
                   + +++  ++g++k  l+ea++++l
    KOO21200.1 278 DLESM-AGWGTFKPLLTEATIAHL 300
                   88888.599***********9998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (356 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       493  (0.0274974); expected 358.6 (0.02)
Passed bias filter:                      389  (0.0216967); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.23s 00:00:00.71 Elapsed: 00:00:00.39
# Mc/sec: 2747.77
//
Query:       KOO21201.1  [L=272]
Description: histone-lysine n-methyltransferase atxr2-like protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.2e-09   38.7   0.0      4e-09   37.1   0.0    1.8  2  SET       SET domain


Domain annotation for each model (and alignments):
>> SET  SET domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.0     0.097   1.7e+03     124     141 ..      12      26 ..       2      47 .. 0.69
   2 !   37.1   0.0   2.2e-13     4e-09     114     168 ..     168     224 ..      69     225 .. 0.71

  Alignments for each domain:
  == domain 1  score: -0.8 bits;  conditional E-value: 0.097
                 TTGGGCEEXSSSSEEEEE CS
                 xxxxxxxxxxxxxxxxxx RF
         SET 124 plarflNHsCdpNcnltv 141
                 p+arf+ H    N++ ++
  KOO21201.1  12 PFARFVAHA---NATNEI 26 
                 999*****8...774444 PP

  == domain 2  score: 37.1 bits;  conditional E-value: 2.2e-13
                 EEEEEECCCGTTGGGCEEXSSSSEEEEEEEE....TTSSEEEEEESSXBXTTEEEEEXT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx....xxxxxxxxxxxxxxxxxxxxxxxx RF
         SET 114 ralksgngagplarflNHsCdpNcnltvqnv....lrgprvavfAtrdIkkGeEltidY 168
                 ++   g+g++p+   lNHsC+pN+  t+       +r++rv+ +  rd+++GeEl++ Y
  KOO21201.1 168 STPCDGTGIFPMQATLNHSCEPNV--TLLKEegaeERDGRVVARLMRDVAAGEELCNAY 224
                 2334455559**************..4444447*************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (272 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       369  (0.0205812); expected 358.6 (0.02)
Passed bias filter:                      272  (0.015171); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.24s 00:00:00.65 Elapsed: 00:00:00.40
# Mc/sec: 2016.37
//
Query:       KOO21202.1  [L=154]
Description: ubiquitin-conjugating enzyme e2, partial [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.8e-37  128.1   0.0    2.2e-37  127.8   0.0    1.0  1  UQ_con    Ubiquitin-conjugating enzyme


Domain annotation for each model (and alignments):
>> UQ_con  Ubiquitin-conjugating enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  127.8   0.0   1.2e-41   2.2e-37       6     139 ..      12     144 ..       7     145 .. 0.94

  Alignments for each domain:
  == domain 1  score: 127.8 bits;  conditional E-value: 1.2e-41
                 HHHHHHSTTTTEEEEEEETTEECEEEEEEEB.TTSTTTTEEEEEEEE--TTTTTS--EEEESST-SCTTBE.TTSBB-CGGGSTTT--TTSHHHHHHH. CS
      UQ_con   6 lkelakkkpsgisaklvddenlfewkvlikgpedtpYeggvFklelefpedYPlkpPkvkfvtkifHPnvd.ksGevcldiLkeekWspaltlesvll. 102
                 l+ ++k  +s ++++lv++ + + ++vl++gp+d+pYegg +k+++ +pe YP+k+P++ f ++ifHPnvd  sG+vcld+++ ++Wsp+ +l +v+  
  KOO21202.1  12 LD-VTKLMMSDFEVHLVNE-STNDMHVLFHGPSDSPYEGGSWKVHVGLPEGYPYKSPSIGFCNRIFHPNVDeMSGTVCLDVIN-QTWSPMFDLVNVFDv 107
                 44.6789999********7.***************************************************9***********.55***********87 PP

                 HHHHHHHS--TTS-SSHHHHHHHHHTHHHHHHHHHHH CS
      UQ_con 103 siqsLlaepnpesplnkeaakllkkdreeykkkvkey 139
                  + +Ll  pnp++pln eaa+l+ +++++y ++++++
  KOO21202.1 108 FLPQLLLYPNPTDPLNGEAAALMMRNPSQYAQRIRDC 144
                 9********************************9887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (154 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       355  (0.0198003); expected 358.6 (0.02)
Passed bias filter:                      344  (0.0191868); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.25s 00:00:00.62 Elapsed: 00:00:00.39
# Mc/sec: 1197.95
//
Query:       KOO21203.1  [L=445]
Description: carbohydrate sulfotransferase 15 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
     0.0031   17.9   0.0        3.8    7.8   0.0    2.4  2  Sulfotransfer_3  Sulfotransferase family


Domain annotation for each model (and alignments):
>> Sulfotransfer_3  Sulfotransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.8   0.0   0.00021       3.8       2     202 ..      79     300 ..      77     303 .. 0.69
   2 !    7.8   0.0   0.00022         4     181     214 ..     322     355 ..     304     358 .. 0.85

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 0.00021
                      EEEE--TTSSHHHHHHHHHTSTT......EE--S--.--TT.-SBHHHHHHHHTT-S...TTTHHHHHHHHHH...........T--HHHHHHH CS
  Sulfotransfer_3   2 ifivGlpRSGTTlLhrlLaahpd......vripeetlfvaprllalleawskdgrelrrlldagltqeeaelp...........hledaeepee 78 
                       f +G + S +  L +  +ahpd       r+++ t+ +++  +++l++ +  g++ rr+l a l    ++l+            +e+++ p +
       KOO21203.1  79 AFLIGNWQSNSKGLGAAIGAHPDikavgnDRCFQ-TWTDDKGGRRWLRQTAPAGFDARRQLLAALGCV-TMLTfypgfagrfhkFWEKEYWPCK 170
                      6889999999999999999999966655444443.446666667777777778888888777755555.4444577888777665555555555 PP

                      HHHHHHTT-BHHHH.HHHHHHHTTTSEEEE.........EESSGGG-HHHHHHHBSSEEE..EEEE--H.HHHHHHHHHTT----------..- CS
  Sulfotransfer_3  79 dlqllraalasvil.ealarvpsyarwlvd.........KsPshlfrldlllelfPdAkf..ihlvRdpvdtvlssyvslfgkkresysedsld 160
                      +  + ++a  ++++ + ++++++ a    d          +P+      +ll++f  A++  +  vR p+d+   ++ +   ++ ++y+    +
       KOO21203.1 171 AKCVREKACEKTYYqREMWPCKQAALAAHDraallpttaSTPALNVTPPYLLRAFYGARVklVACVRSPIDRLRHAFYTH-PHYAKKYG---QG 260
                      55555555554444144566655555555599999999999999999999****98776433*******88665555554.44445555...22 PP

                      HHHHHHHHHHHHHHHHHHHHHHS-TTSEEEEEHHHHHH-HHH CS
  Sulfotransfer_3 161 eledaleewarayerllaararlppdrfldvrYedLvadpeg 202
                           l+ +a +++   +a+ +   +r + +++e+L a ++g
       KOO21203.1 261 A--AGLHAYAMEQRAGWQACVQSYGARRCAIHFEQLGAAQDG 300
                      4..459999999999999999988888999*****9988776 PP

  == domain 2  score: 7.8 bits;  conditional E-value: 0.00022
                      HHS-TTSEEEEEHHHHHH-HHHHHHHHHHHHT-- CS
  Sulfotransfer_3 181 arlppdrfldvrYedLvadpegtlrriyeflglp 214
                        +p++++l vr ed++ + +  l+ri ++lg++
       KOO21203.1 322 GAFPESQLLVVRTEDFIDKRQPLLNRIWRHLGVE 355
                      449*****************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (445 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       339  (0.0189079); expected 358.6 (0.02)
Passed bias filter:                      277  (0.0154498); expected 358.6 (0.02)
Passed Vit filter:                        12  (0.000669307); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.24s 00:00:00.72 Elapsed: 00:00:00.41
# Mc/sec: 3265.49
//
Query:       KOO21204.1  [L=595]
Description: nmd3p [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.1e-67  225.6   3.4    9.2e-67  225.0   3.4    1.3  1  NMD3      NMD3 family
     0.0084   16.4   1.1      0.021   15.1   1.1    1.7  1  Nif11     Nif11 domain
  ------ inclusion threshold ------
       0.11   11.2   0.0       0.19   10.4   0.0    1.3  1  DUF521    Protein of unknown function (DUF521)


Domain annotation for each model (and alignments):
>> NMD3  NMD3 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  225.0   3.4   1.5e-70   9.2e-67       1     243 []       5     233 ..       5     233 .. 0.98

  Alignments for each domain:
  == domain 1  score: 225.0 bits;  conditional E-value: 1.5e-70
        NMD3   1 CcrCGkeieeling..lCedCllkevditegiek.ievevCkeCgryl.pkgkWvkaeleseellaeclkklvekgLkvseeveevkvelvdaefiwte 95 
                 Cc+CG++i+ + n+   C+dCl +++di  g  k ++ + C+ C+r+  + g W+ +e es+ella++lkk   +gL          v+lvda+f+wte
  KOO21204.1   5 CCQCGVAIK-S-NPinTCVDCLQNRYDIGAGVAKqVQQHTCRGCNRFErRDGGWTAVEMESKELLALLLKKP--RGLG--------AVRLVDASFVWTE 91 
                 ********6.4.5556******************9*************9888********************..****........************* PP

        NMD3  96 phskrikvkvtvqgevrgenetilqqevevevkvkrqqCprCsriagg.yyeaivQvRqkrelteeehkrtfelleqlilkhdahafiskikevkeGlD 193
                 phskrik++vt+q+e+   ++++lqq++++e+++ ++qCp C+r++++ ++ a++QvRqk     + hkrtf+++eqlil+h ah ++++i evk+GlD
  KOO21204.1  92 PHSKRIKLRVTIQKEI--ITNAVLQQSFVIEYVIGNKQCPHCQRREAKdTWVAMLQVRQK-----VPHKRTFLWMEQLILRHAAHVDATNILEVKDGLD 183
                 ****************..8899**************************************.....********************************** PP

        NMD3 194 fyfgsksaArklveflksevggkvkeseklvsedkksgkevyrltysvrl 243
                 f+f ++s+A+kl++fl+ + ++++k+s++  s d+++gk + ++ty++++
  KOO21204.1 184 FFFDQRSHAEKLMSFLQGVAPTRYKTSKSDLSIDTQTGKCKTKFTYALEI 233
                 ***********************************************997 PP

>> Nif11  Nif11 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   1.1   3.4e-06     0.021       3      32 ..     438     467 ..     437     485 .. 0.90

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 3.4e-06
       Nif11   3 eeqlkaFlekvkqDpalreqlkacsdheev 32 
                 e + ++Fl+ +++Dp+ r+q++  +dhe++
  KOO21204.1 438 EADYEDFLQELEEDPEMRKQINLYKDHEAL 467
                 57899***********************97 PP

>> DUF521  Protein of unknown function (DUF521)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.0   3.2e-05      0.19     297     348 ..     127     179 ..      84     188 .. 0.81

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 3.2e-05
      DUF521 297 GcPhlsleElrel.aellkgkkkkvkvelwvttsrevkeeaerlglvekleka 348
                  cPh++ +E ++  +++l+ ++k + +++++++++ + + a +++ +++le +
  KOO21204.1 127 QCPHCQRREAKDTwVAMLQVRQKVPHKRTFLWMEQLILRHAAHVDATNILEVK 179
                 4*********97549999******************************99954 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (595 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       986  (0.0549947); expected 358.6 (0.02)
Passed bias filter:                      531  (0.0296168); expected 358.6 (0.02)
Passed Vit filter:                        53  (0.0029561); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.60u 0.27s 00:00:00.87 Elapsed: 00:00:00.43
# Mc/sec: 4122.41
//
Query:       KOO21205.1  [L=341]
Description: sugar o-methyltransferase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    5.2e-07   30.6   0.1    1.5e-06   29.2   0.0    1.8  2  Methyltransf_24  Methyltransferase domain
  ------ inclusion threshold ------
       0.19   11.0   0.0       0.55    9.5   0.0    1.6  2  TylF             Macrocin-O-methyltransferase (TylF)


Domain annotation for each model (and alignments):
>> Methyltransf_24  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.2   0.0   1.7e-10   1.5e-06       2     105 ..       3     129 ..       2     130 .. 0.81
   2 ?   -2.0   0.1      0.81   7.2e+03      44      50 ..     277     283 ..     236     309 .. 0.48

  Alignments for each domain:
  == domain 1  score: 29.2 bits;  conditional E-value: 1.7e-10
  Methyltransf_24   2 EiGvysGvstlwllralrrnga.grlvavdhdpgaeeaaalareaglddrvrlikads........................eealasla.ags 69 
                      EiG   G  t+  ++a   +    +++ vd +   +e+a+ ar +g +dr+  ++a++                        +++l+ +   ++
       KOO21205.1   3 EIG--IGEDTAPSVQAWATYFPnAHIYPVDIKT-RKEVAERARPSGPTDRLVKHQAQFgcdynrsmwdnprihltletdasdPKQLGAVPlPEQ 93 
                      555..5555555555555443346899999988.6889999999**********999999999999999999888776665555555555999* PP

  Methyltransf_24  70 iDllfiDgghaaeavledleallprlapggvvlfdD 105
                       D+++ Dg+h+  + ++ l++l+prl+pgg+ ++ D
       KOO21205.1  94 LDIILDDGSHKFFDQQRTLHTLWPRLRPGGFYIIED 129
                      *********************************998 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 0.81
  Methyltransf_24  44 eaglddr 50 
                      +a+l+++
       KOO21205.1 277 QAKLQEQ 283
                      1333333 PP

>> TylF  Macrocin-O-methyltransferase (TylF)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   0.0   6.1e-05      0.55     198     223 ..     107     132 ..      87     139 .. 0.80
   2 ?   -2.0   0.0      0.19   1.7e+03      23      59 ..     283     319 ..     266     324 .. 0.56

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 6.1e-05
        TylF 198 stldaleaLYdkvskGGfviiDDyaa 223
                   + +l++L++++ +GGf ii+D+ +
  KOO21205.1 107 DQQRTLHTLWPRLRPGGFYIIEDMLV 132
                 45789******************875 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 0.19
        TylF  23 reillkklekkaallvkkskfdeekraegedwPslah 59 
                 ++++l++  ++a++ +++   +  ++   +dwP+la 
  KOO21205.1 283 QQAVLAARLQRAEAEAARPMEEPGAEIARSDWPALAL 319
                 3344444445555555555555566667789999886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (341 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       553  (0.0308439); expected 358.6 (0.02)
Passed bias filter:                      348  (0.0194099); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.49u 0.22s 00:00:00.71 Elapsed: 00:00:00.41
# Mc/sec: 2514.32
//
Query:       KOO21206.1  [L=744]
Description: cyanophycinase-like protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.8e-08   33.7   0.0    7.6e-08   32.2   0.0    1.8  2  Peptidase_S51    Peptidase family S51
  ------ inclusion threshold ------
      0.012   14.5   0.0      0.022   13.7   0.0    1.4  1  Chlorophyllase2  Chlorophyllase enzyme
      0.052   12.5   0.0       0.09   11.8   0.0    1.3  1  Chlorophyllase   Chlorophyllase
       0.06   13.1   0.0       0.11   12.3   0.0    1.3  1  Abhydrolase_5    Alpha/beta hydrolase family
        1.5    8.8   8.1        1.6    8.7   2.1    2.7  2  Tme5_EGF_like    Thrombomodulin like fifth domain, EGF-like


Domain annotation for each model (and alignments):
>> Peptidase_S51  Peptidase family S51
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.2   0.0   2.1e-11   7.6e-08      65     199 ..      97     254 ..      46     259 .. 0.69
   2 ?   -3.0   0.0       1.3   4.7e+03     116     131 ..     534     549 ..     519     559 .. 0.79

  Alignments for each domain:
  == domain 1  score: 32.2 bits;  conditional E-value: 2.1e-11
                    E--TTTS-HHH...HHHHHHHSSEEEE--S-HHHHHHHHHHTTHHHHHHHHHHTT-EEEEETHHHHTTSSB-......GGGTTTS-GGG-S.---B CS
  Peptidase_S51  65 eLelskdpeee...ieeklleadviyvgGGntfrLlkllketgldkllreavqqglvyiGvSAGaivagesi......ettsysdspikap.esfe 150
                     L ++++  +e   + +k+  ad+i  +GG++   l++++   +++ l+ a+++g+++ G+SAG  + g s+       +ts  d+   +p +++ 
     KOO21206.1  97 TLLTKNRAAAEdpfVLSKIDGADAIWFAGGDQSVYLDEWQASTMQQRLQAAIARGVPVGGTSAGCDIQGGSVytgangSATS--DEALADPyNKYM 190
                    343444444444668889*********************************************8766655540000004444..666666666666 PP

                    -............---SSSEEET.TT...T-TTSHHHHHHHHHH----..-EEE--TTEEEEEE CS
  Peptidase_S51 151 a............LgLvkfqivP.Hylghkeeereerlaefvesneek..pvigldegtallie 199
                    +             gL+  +iv+ H+++ +   r  +la  + +++e     +g+de+ta+ i+
     KOO21206.1 191 TlqpyaflkhsppAGLLANIIVDtHFMTRDRFGRLLALAARLWKDDELprAAVGIDEKTAIAID 254
                    6666666666666666666666545556666666666666655555543556777777777665 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 1.3
                    T-EEEEETHHHHTTSS CS
  Peptidase_S51 116 glvyiGvSAGaivage 131
                     l++ G SAG  ++ +
     KOO21206.1 534 ALIVTGHSAGGQIVQR 549
                    57889*****988766 PP

>> Chlorophyllase2  Chlorophyllase enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.0   6.1e-06     0.022      72     111 ..     515     554 ..     447     565 .. 0.90

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 6.1e-06
  Chlorophyllase2  72 WlakgLesvlpeevepdlsklalsgHSrGgktafalalgk 111
                       l++ L+ ++ +   p+l+ l ++gHS+Gg+++   al +
       KOO21206.1 515 VLDEMLHAMMDQRTYPNLKALIVTGHSAGGQIVQRFALAS 554
                      57788999999*********************98888765 PP

>> Chlorophyllase  Chlorophyllase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   2.5e-05      0.09     102     142 ..     515     557 ..     501     573 .. 0.78

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 2.5e-05
  Chlorophyllase 102 WlseglkavlptsveanlsklalvGhsrGGkta..falalgys 142
                      l e l+a++++ + +nl+ l ++Ghs GG+    fala  + 
      KOO21206.1 515 VLDEMLHAMMDQRTYPNLKALIVTGHSAGGQIVqrFALASSFE 557
                     467889999**********************752267666665 PP

>> Abhydrolase_5  Alpha/beta hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   2.9e-05      0.11      51      91 ..     527     568 ..     514     579 .. 0.78

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 2.9e-05
  Abhydrolase_5  51 keapklekfvvgGhslGGvvasrfaaeee.kiegvvflasYP 91 
                    + +p+l+ ++v+Ghs GG ++ rfa   + +  + v l+ +P
     KOO21206.1 527 RTYPNLKALIVTGHSAGGQIVQRFALASSfEPRSGVTLGYFP 568
                    579*********************987654444555566666 PP

>> Tme5_EGF_like  Thrombomodulin like fifth domain, EGF-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.4   0.4     0.042   1.5e+02       2      13 ..     382     393 ..     381     395 .. 0.88
   2 ?    8.7   2.1   0.00044       1.6       5      21 ..     668     687 ..     665     688 .. 0.88

  Alignments for each domain:
  == domain 1  score: 2.4 bits;  conditional E-value: 0.042
  Tme5_EGF_like   2 hCeekkCpaqCD 13 
                    +Ce   C +qC 
     KOO21206.1 382 WCEGGACNPQCG 393
                    69*********6 PP

  == domain 2  score: 8.7 bits;  conditional E-value: 0.00044
  Tme5_EGF_like   5 ekkCpaqCDpnsqg...sCf 21 
                    e++C + CDp  +g   sC+
     KOO21206.1 668 EQRCTPGCDPQDGGldtSCE 687
                    89***********9988886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (744 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       340  (0.0189637); expected 358.6 (0.02)
Passed bias filter:                      295  (0.0164538); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.55u 0.24s 00:00:00.79 Elapsed: 00:00:00.39
# Mc/sec: 5672.23
//
Query:       KOO21207.1  [L=145]
Description: 3-oxo-5-alpha-steroid 4-dehydrogenase 1 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.2e-27   96.7   0.6    1.3e-27   96.6   0.6    1.1  1  Steroid_dh  3-oxo-5-alpha-steroid 4-dehydrogenase
    1.3e-05   24.8   0.1    1.4e-05   24.7   0.1    1.2  1  DUF1295     Protein of unknown function (DUF1295)
    8.8e-05   22.9   0.3    0.00017   21.9   0.3    1.6  1  PEMT        Phospholipid methyltransferase


Domain annotation for each model (and alignments):
>> Steroid_dh  3-oxo-5-alpha-steroid 4-dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   96.6   0.6   2.2e-31   1.3e-27      38     150 .]      32     145 .]       1     145 [] 0.84

  Alignments for each domain:
  == domain 1  score: 96.6 bits;  conditional E-value: 2.2e-31
  Steroid_dh  38 kkdrlllgivlfvlgmliniksdiiLrelrkegetkykiprgglFelvsapnyfgEilewigyalvtkslaalaFalftvln.ltvraaahhkwykkkf 135
                  + ++l+g++lf++g+  n + ++ L +lrk+ e++ykip+gglFelv+ap+y++E+l w+g alv +  +  aF + ++++ l+ r++a+  w + kf
  KOO21207.1  32 MERTHLIGVALFFTGLAGNLYHHYLLSNLRKADEKEYKIPTGGLFELVAAPHYLFELLGWLGAALVGQ-HPVHAFVFASMTFyLADRSVAQSTWNRGKF 129
                 345789************************************************************99.788888886554428899************ PP

  Steroid_dh 136 .ekYpksRkiliPfvf 150
                    Yp +Rk l+P++f
  KOO21207.1 130 gARYPATRKHLVPYIF 145
                 99*************8 PP

>> DUF1295  Protein of unknown function (DUF1295)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.7   0.1   2.4e-09   1.4e-05     116     190 ..      31     105 ..       5     137 .. 0.85

  Alignments for each domain:
  == domain 1  score: 24.7 bits;  conditional E-value: 2.4e-09
     DUF1295 116 alkaldviglalwlvgivlealaDqQlsafkkdpankgkvldsGLwrysRHPNYfgealiWwglflialealegl 190
                  ++ + +ig+al+ +g++++ +    ls+ +k  + + k+ + GL+++   P Y++e l W+g  l++ + ++  
  KOO21207.1  31 DMERTHLIGVALFFTGLAGNLYHHYLLSNLRKADEKEYKIPTGGLFELVAAPHYLFELLGWLGAALVGQHPVHAF 105
                 6788999**********************************************************9998765554 PP

>> PEMT  Phospholipid methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.9   0.3   2.9e-08   0.00017       4      85 ..      37     112 ..      34     133 .. 0.75

  Alignments for each domain:
  == domain 1  score: 21.9 bits;  conditional E-value: 2.9e-08
        PEMT   4 ilGlllialglllvlssiealgefgtfygdfFlelmdklvtsGiYrylnnPeyvgstlgflGlaLitgsaag.lllallvllv 85 
                 ++G++l+++gl+ +l  ++ l++      d   e++ k+ t+G+++++  P y++ +lg+lG+aL+ + ++  +++a  ++++
  KOO21207.1  37 LIGVALFFTGLAGNLYHHYLLSNLRKA--D---EKEYKIPTGGLFELVAAPHYLFELLGWLGAALVGQHPVHaFVFA--SMTF 112
                 567777777777777777777776666..3...455699***************************99999533333..2222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (145 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       341  (0.0190195); expected 358.6 (0.02)
Passed bias filter:                      265  (0.0147805); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.37u 0.27s 00:00:00.64 Elapsed: 00:00:00.41
# Mc/sec: 1067.92
//
Query:       KOO21208.1  [L=490]
Description: putative cysteine desulfurylase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.2e-11   42.8   0.0    2.5e-10   39.9   0.0    2.1  1  Aminotran_5    Aminotransferase class-V
    0.00011   22.6   0.1    0.00022   21.6   0.1    1.5  1  EF-hand_7      EF-hand domain pair
     0.0012   18.3   2.7     0.0081   15.6   0.3    2.5  2  EF-hand_1      EF hand
  ------ inclusion threshold ------
      0.021   14.7   4.1      0.072   13.1   0.4    2.5  2  EF-hand_6      EF-hand domain
       0.15   12.0   0.0       0.25   11.3   0.0    1.3  1  Pol_alpha_B_N  DNA polymerase alpha subunit B N-terminal


Domain annotation for each model (and alignments):
>> Aminotran_5  Aminotransferase class-V
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.9   0.0   6.9e-14   2.5e-10      11     297 ..     125     417 ..     119     473 .. 0.70

  Alignments for each domain:
  == domain 1  score: 39.9 bits;  conditional E-value: 6.9e-14
                  --HHHHHHHHHHHHCTCCSSSSSSSHHHHHHHHH.HHHHHHHHHHHHT-STGGGEEEESSHHHHHHHHHHHCCCC-TTTSE....EEEETTSHGGGTH CS
  Aminotran_5  11 kpqeVldalqeyytdynanvhrsvhhlgkeatka.veearekvaelinaeseeeiiftsGtteainlvalslarslkpgde....ivvteaehhanlv 103
                   pq Vl+a + + + + an+  +    g+   +a + +a +  a  i+a+    +  + ++t a +++a  +a++l++g++    +++ ++ ++a+  
   KOO21208.1 125 APQPVLKAEMAHRSWWRANPDAAYFGIGASSLDArLAAAADAAAVAIGAPA-GSVALVENATVATAIIASRWAKALREGRHerrsVLLLDVCYKAAAY 221
                  6999********999*****9988888776665515666666666788885.********************9997766433333************* PP

                  HHHHHHHHHTEEEEEEEBETTSCBE...GGGHHHH--.TTEEEEEEESBETTTTEB--HHHHHHHHHHTT-.EEEEE-TTTTTT.S---HHHHTESEE CS
  Aminotran_5 104 pwqelakrtgakvkvipldeegeld...ldeleklln.ektklvaithvsnvtGtiqpveeigklakkkga.lvlvDaaqavgh.ipidvkklgvDfl 195
                    ++++ + g  + ++++    + +   l+ l+ +l+  +++  ++ hvs+   ++ p+ e+++l++++++  v+vD+a ++g    +dv++lg+Df+
   KOO21208.1 222 SVRDICGAAGGALSFASVPFPDTTTesiLKSLDGTLAaTRPRFAMLDHVSSQPAIVMPLREMIALCRAHDVeEVAVDGAHGLGLvEAVDVSALGADFY 319
                  *************999874333333234666666665499****************************976369********862679********** PP

                  EEETTT.TTSSTT-EEEEEEHHHHHTS..SS.STTSEEEEETTEEEEHCTTGGGS.SS--HHHHHHHHHHHHHHHCH...HHHHHHHHHHHHHHHHHH CS
  Aminotran_5 196 afsghK.llgPtGiGvlyvrkellekleplllggemveevsleettfaeapskfeaGTpnvagiiglgaaleyleei...gleaiekhekelaeylle 289
                  +   hK  + P   +vl v ++   +  ++++  +        + +++ea +    GT   a++ ++ +aleyl+ +   ++ ++ +++++  + + +
   KOO21208.1 320 FTNLHKhAFVPGTATVLHVATDTARAS-TAHIAPS----WHSGQGVITEARW---PGTRDFASLLAVPEALEYLATWrsvDALNAPTYNARGWQDAAA 409
                  ******555565567888777665554.2222111....1222222344445...5899999999999999998554111334444555555555555 PP

                  HHCTSTTE CS
  Aminotran_5 290 rlkslpgv 297
                  +l++  gv
   KOO21208.1 410 QLSEAWGV 417
                  55555555 PP

>> EF-hand_7  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.6   0.1   6.2e-08   0.00022      10      69 ..      29      89 ..      22      91 .. 0.81

  Alignments for each domain:
  == domain 1  score: 21.6 bits;  conditional E-value: 6.2e-08
   EF-hand_7 10 elDtdgdgyldkeellrllrkifqga.gegsklsdee...lellfkefDtdkdGvisfdEFlkl 69
                 +D d+d +l+ +el++l +++ +++ +++      +    ++l+k++D d+dG  +++E++ +
  KOO21208.1 29 DYDEDDDERLSLRELEQLKKQLQAQTaSPAAQQ---AplpTQTLMKMVDADDDGFATRNELVDM 89
                59**************99999876445333333...244589*****************99876 PP

>> EF-hand_1  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.4   0.1     0.038   1.4e+02       8      25 ..      29      46 ..      23      50 .. 0.87
   2 !   15.6   0.3   2.2e-06    0.0081       5      29 .]      69      93 ..      66      93 .. 0.93

  Alignments for each domain:
  == domain 1  score: 2.4 bits;  conditional E-value: 0.038
                HHTTTSSSEEEHHHHHHH CS
   EF-hand_1  8 efDkDgdGkIdfeEfkel 25
                ++D D d ++++ E+ +l
  KOO21208.1 29 DYDEDDDERLSLRELEQL 46
                69************9886 PP

  == domain 2  score: 15.6 bits;  conditional E-value: 2.2e-06
                HHHHHTTTSSSEEEHHHHHHHHHHH CS
   EF-hand_1  5 iFrefDkDgdGkIdfeEfkellkkl 29
                +++++D D dG+ +++E++++lk++
  KOO21208.1 69 LMKMVDADDDGFATRNELVDMLKRM 93
                79********************986 PP

>> EF-hand_6  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.3   0.3     0.058   2.1e+02       9      24 ..      30      45 ..      28      46 .. 0.92
   2 ?   13.1   0.4     2e-05     0.072       7      28 ..      71      92 ..      67      99 .. 0.86

  Alignments for each domain:
  == domain 1  score: 2.3 bits;  conditional E-value: 0.058
   EF-hand_6  9 fDkdgdGkidaeElrk 24
                +D d+d  ++  El +
  KOO21208.1 30 YDEDDDERLSLRELEQ 45
                8************987 PP

  == domain 2  score: 13.1 bits;  conditional E-value: 2e-05
   EF-hand_6  7 klfDkdgdGkidaeElrkalrk 28
                k+ D d+dG+ +++El+++l++
  KOO21208.1 71 KMVDADDDGFATRNELVDMLKR 92
                899*****************96 PP

>> Pol_alpha_B_N  DNA polymerase alpha subunit B N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   7.1e-05      0.25      17      90 ..      15      90 ..       8     136 .. 0.72

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 7.1e-05
                   XXXXXXXXXXXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXX.XXXXXXXXX.XXXX........XXXX. CS
  Pol_alpha_B_N 17 svedLfiKWEsfsikmkleeskkltlknlrefkkdlqdqlek.rakss.kkpktekksaaatpraaakngdlfgml 90
                   s e+L    +s+ i  ++++++ l+l++l+++kk+lq+q     a+++    +t+ k++ a     a  + l +ml
     KOO21208.1 15 SLEELIETADSWLIDYDEDDDERLSLRELEQLKKQLQAQTASpAAQQApLPTQTLMKMVDADDDGFATRNELVDML 90
                   67888888889999999**********************9995333333333333333333333334444555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (490 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       709  (0.0395449); expected 358.6 (0.02)
Passed bias filter:                      484  (0.0269954); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.55u 0.25s 00:00:00.80 Elapsed: 00:00:00.40
# Mc/sec: 3720.30
//
Query:       KOO21209.1  [L=311]
Description: hypothetical protein Ctob_004933 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.4e-05   24.2   0.9        0.5   10.9   0.3    3.2  2  Agenet    Agenet domain
     0.0053   16.3   0.1        2.9    7.6   0.0    2.4  2  SH3_1     SH3 domain
  ------ inclusion threshold ------
        1.9    8.3  10.7        2.6    7.8  10.7    1.2  1  RR_TM4-6  Ryanodine Receptor TM 4-6


Domain annotation for each model (and alignments):
>> Agenet  Agenet domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.9   0.3   8.4e-05       0.5       1      60 [.     173     238 ..     173     239 .. 0.65
   2 !   10.3   0.0   0.00013      0.75      14      59 ..     257     293 ..     248     295 .. 0.86

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 8.4e-05
      Agenet   1 GdkVEvlsdeegfrGaWfrAtilkvkegdkylVeYddlddddgskpl.eE......wvdasdiRPlp 60 
                 G  VEv+ +  + +  W++A  l+  ++++     +    + +++pl  E      w +  ++RPlp
  KOO21209.1 173 GAVVEVSLRLGEAYANWYEARLLEN-NKGRWRLALQRRVAEGDWEPLlLEgrpateWAKPDMLRPLP 238
                 6789999997777788*********.65644444444223334444433333333399999****98 PP

  == domain 2  score: 10.3 bits;  conditional E-value: 0.00013
      Agenet  14 rGaWfrAtilkvkegdkylVeYddlddddgskpleEwvdasdiRPl 59 
                 +G W++  + +  +g++++V Y          + + +v ++++RPl
  KOO21209.1 257 DG-WWKVRVQEA-SGGTFTVVYVP-------ANATHTVTRERLRPL 293
                 56.*********.99*********.......88889*********7 PP

>> SH3_1  SH3 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.6   0.0   0.00049       2.9      15      43 ..     169     199 ..     163     201 .. 0.90
   2 !    6.2   0.1    0.0013       7.9      29      39 ..     256     266 ..     249     272 .. 0.85

  Alignments for each domain:
  == domain 1  score: 7.6 bits;  conditional E-value: 0.00049
                 EBSTTEEEEEEEECSS...SEEEEEETTSTEE CS
       SH3_1  15 sfkkGDviivleksed...gWwkgrlkgtgke 43 
                 sf+ G v++v+ +  +   +W+++rl  ++ +
  KOO21209.1 169 SFEAGAVVEVSLRLGEayaNWYEARLLENN-K 199
                 799*******999999999*******9975.4 PP

  == domain 2  score: 6.2 bits;  conditional E-value: 0.0013
                 SSSEEEEEETT CS
       SH3_1  29 edgWwkgrlkg 39 
                 +dgWwk+r++ 
  KOO21209.1 256 DDGWWKVRVQE 266
                 68******985 PP

>> RR_TM4-6  Ryanodine Receptor TM 4-6
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.8  10.7   0.00043       2.6      37     146 ..      44     162 ..      20     186 .. 0.39

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 0.00043
                 XXXXXXXXXXXXXXXXXXXXXXXX...XXXXXXXXXXXXXXXXXXXX....XXXXXXXX........XXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXX CS
    RR_TM4-6  37 eeeeedllsdvfgldlkkeggqykvvakkseagLgDlseteaeespt....pelkkkla........eeeeaeeekeeeeepeaeaeekadaengekee 123
                  ++ ++   +vf+ +++ e++ +++ a++    L D s+ +++++ +    p   kk          e+e+a ++++ e   e+ea +k++ae++e++ 
  KOO21209.1  44 IKAAQEAQNEVFAAEEDVEET-KRMLAEGLI--LADGSQAPPKRKRPssirPPGPKKSLggndggggEAEQARKRMAVEVA-EKEAAKKTKAEEKEAKA 138
                 234445555555555555554.445555544..555555555554433444222222222333333211122222221111.11111222222222222 PP

                 XXXX...........XXXXXXXXX CS
    RR_TM4-6 124 keke.keeeekeseeeeeekkkkk 146
                 ++k  ++e++++++  e+ +kkk+
  KOO21209.1 139 AAKVaEKEAAQATKLAEKDAKKKA 162
                 222211111111111111111111 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (311 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2413  (0.134586); expected 358.6 (0.02)
Passed bias filter:                     1034  (0.0576719); expected 358.6 (0.02)
Passed Vit filter:                       148  (0.00825478); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.62u 0.26s 00:00:00.88 Elapsed: 00:00:00.38
# Mc/sec: 2440.16
//
Query:       KOO21210.1  [L=739]
Description: hypothetical protein Ctob_004930 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (739 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      3053  (0.170283); expected 358.6 (0.02)
Passed bias filter:                      542  (0.0302304); expected 358.6 (0.02)
Passed Vit filter:                       248  (0.0138323); expected 17.9 (0.001)
Passed Fwd filter:                        90  (0.0050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 2.71u 0.46s 00:00:03.17 Elapsed: 00:00:00.68
# Mc/sec: 3288.69
//
Query:       KOO21211.1  [L=1382]
Description: heavy metal p-type ATPase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.5e-89  294.4  25.1    1.2e-13   51.3   0.2    7.5  7  HMA           Heavy-metal-associated domain
      8e-43  147.2   7.1    1.1e-41  143.4   4.9    2.9  2  Hydrolase     haloacid dehalogenase-like hydrolase
    1.3e-42  145.4   9.3    1.3e-36  125.8   0.4    3.4  3  E1-E2_ATPase  E1-E2 ATPase
    3.6e-05   23.6   0.2    0.00025   20.9   0.3    2.0  2  Hydrolase_3   haloacid dehalogenase-like hydrolase
    0.00065   20.2   0.6     0.0036   17.7   0.1    2.4  2  HAD           haloacid dehalogenase-like hydrolase
  ------ inclusion threshold ------
       0.24   11.8   0.8         17    5.9   0.0    4.0  5  GFA           Glutathione-dependent formaldehyde-activating e


Domain annotation for each model (and alignments):
>> HMA  Heavy-metal-associated domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.4   0.1   1.2e-09   3.5e-06       2      57 ..       6      58 ..       5      62 .. 0.87
   2 !   48.5   1.1   2.9e-16   8.8e-13       2      61 ..      74     130 ..      73     131 .. 0.95
   3 !   51.3   0.2     4e-17   1.2e-13       1      60 [.     152     208 ..     152     210 .. 0.97
   4 !   48.7   0.1   2.5e-16   7.5e-13       1      61 [.     222     279 ..     222     280 .. 0.97
   5 !   49.6   0.0   1.3e-16   3.9e-13       1      61 [.     318     375 ..     318     376 .. 0.97
   6 !   34.7   0.3   5.9e-12   1.8e-08       4      62 .]     415     470 ..     412     470 .. 0.96
   7 !   47.5   0.1   6.1e-16   1.8e-12       2      61 ..     523     582 ..     522     583 .. 0.97

  Alignments for each domain:
  == domain 1  score: 27.4 bits;  conditional E-value: 1.2e-09
         HMA  2 vrvsgmhCagCaakvekvLselpgVesvkvdlatktvtVegdaestklrkiieaie 57
                ++vs + C gC+ +ve  Ls ++gVe++ vd  t++vtV g+a+     +++ a++
  KOO21211.1  6 YQVSSIVCSGCKEAVEAELSQIDGVEAARVDIPTGSVTVWGNAPF---TALQVAVS 58
                7889999********************************999986...55665555 PP

  == domain 2  score: 48.5 bits;  conditional E-value: 2.9e-16
         HMA   2 vrvsgmhCagCaakvekvLselpgVesvkvdlatktvtVegdaestklrkiieaiekagy 61 
                 + v+gm C++C akve+ L+++ gV svkvdl++  +tV+g+a+s    ++i aie +g+
  KOO21211.1  74 LHVDGMMCGHCTAKVEQGLQAVVGVASVKVDLKAELATVVGTATS---AALIHAIETTGH 130
                 579******************************************...99****998875 PP

  == domain 3  score: 51.3 bits;  conditional E-value: 4e-17
         HMA   1 tvrvsgmhCagCaakvekvLselpgVesvkvdlatktvtVegdaestklrkiieaiekag 60 
                 t+ v gm C++C+akvek+L+ ++gV s+ vdl++  + V+g+a+     ++++a+ekag
  KOO21211.1 152 TLTVRGMSCGHCSAKVEKALHDVEGVLSAQVDLEAALAIVVGTAPL---AALLAAVEKAG 208
                 689*******************************************...*********98 PP

  == domain 4  score: 48.7 bits;  conditional E-value: 2.5e-16
         HMA   1 tvrvsgmhCagCaakvekvLselpgVesvkvdlatktvtVegdaestklrkiieaiekagy 61 
                 t++v gm C++C akvek+L+ ++gV s  vdlat+ +t++g+++     ++i+a+e++g+
  KOO21211.1 222 TLSVGGMMCDHCTAKVEKSLQVIEGVISTQVDLATGLATIVGTVPL---AALIAAVEATGH 279
                 6899******************************************...*********997 PP

  == domain 5  score: 49.6 bits;  conditional E-value: 1.3e-16
         HMA   1 tvrvsgmhCagCaakvekvLselpgVesvkvdlatktvtVegdaestklrkiieaiekagy 61 
                 t++v+gm C++C+a++++ Ls+lpgV+ v v+l  + vtV+g+ +    +++ie+i++ag+
  KOO21211.1 318 TLQVDGMFCEACRATIKRELSALPGVTFVAVNLHWGIVTVRGTSSV---EELIESISSAGR 375
                 789*******************************************...*********995 PP

  == domain 6  score: 34.7 bits;  conditional E-value: 5.9e-12
         HMA   4 vsgmhCagCaakvekvLselpgVesvkvdlatktvtVegdaestklrkiieaiekagyk 62 
                 v +m C gC+ kv ++   + gV  v++dl+t+ + V+g+ +    +++++a+++agy+
  KOO21211.1 415 VMDMLCSGCKDKVDRAARMVRGVAHVDIDLDTHVLSVSGQLAT---EDVLAAVKAAGYE 470
                 669***************************************9...************7 PP

  == domain 7  score: 47.5 bits;  conditional E-value: 6.1e-16
         HMA   2 vrvsgmhCagCaakvekvLselpgVesvkvdlatktvtVegdaestklrkiieaiekagy 61 
                 + ++gm+Ca+C+++ve  L++l+gV+s++v+l  k+  V +da  +++ +i++ + k+gy
  KOO21211.1 523 LTIDGMTCASCVGAVEGGLLSLEGVHSATVSLMGKSGKVAYDARRVDVPAILARVVKTGY 582
                 679********************************************************9 PP

>> Hydrolase  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.6   0.0     0.047   1.4e+02     124     147 ..     458     481 ..     247     487 .. 0.90
   2 !  143.4   4.9   3.8e-45   1.1e-41       1     210 []    1035    1242 ..    1035    1242 .. 0.89

  Alignments for each domain:
  == domain 1  score: 2.6 bits;  conditional E-value: 0.047
                 HHHHHHHHHTTEEEEEEESSEHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxx RF
   Hydrolase 124 aeavasLkaagievvlltgdnpet 147
                 ++++a+ kaag+e +ll+ d+p+ 
  KOO21211.1 458 EDVLAAVKAAGYEPCLLSEDFPAK 481
                 58999***************9975 PP

  == domain 2  score: 143.4 bits;  conditional E-value: 3.8e-45
                  SSEEEEESBTTTBCHHHHHHHHHHHH.CHHHHHHHHHH......HHCHHHHHHHHHHHHHHHHH...HHHHHETTTE........HHHHTHHHHHHH CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxx......xxxxxxxxxxxxxxxxxxxx...xxxxxxxxxx........xxxxxxxxxxxx RF
   Hydrolase    1 iktvvfDkdGTLttgepsvedvivsa.alalaaaletg......sehpigkalvaaakarsgal...tgfatfigrg........ayaigkpewlta 79  
                  + t++fDk+GTLttg+ sv +v+  a  + +a  l+ +      sehpi+ka+++ a+  + ++   ++f + +g+g        ++++g++ w+++
  KOO21211.1 1035 VQTICFDKTGTLTTGKLSVARVLLWAqGVNEAILLRAAgsaergSEHPIAKAIINHAELFGVQTaepADFVAAAGQGlqcvvdgkTVLMGNRSWMEE 1131
                  579*************9999999999844444444444555699*********99999995555557****************************** PP

                  HHCHHHHHHHHHHHHHHCHHHHHHTTHHHHHHHHHHTHHBHTTHHHHHHHHHHTTEEEEEEESSEHHHHHHHHHHTTGGGESEEEEHHCES...STT CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxx RF
   Hydrolase   80 ldippdlgaaigsaqsqgrtvallqaralavftiadplkvkpeaaeavasLkaagievvlltgdnpetaeraanqlGddyfdaviasdiet...vak 173 
                  +               q  +va l  + ++ +++ad+  +kp+a  +v++L + g +v++++gdn++ta ++a q+G           i+    va+
  KOO21211.1 1132 N--------GLKLSDVQEAEVAAL--ESRGALAVADS--LKPDAPAVVKQLTQLGMKVWMISGDNERTAAHIAAQAG-----------IDLmyvVAG 1205
                  *........555555566666667..99*********..**************************************...........665679*** PP

                  TSHHHHHHHHHHHTSTGGGEEEEESSHHHHHHHHHTT CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   Hydrolase  174 pspegkvaaireLqgkpeevamVGDgvnDaaalaaAg 210 
                  ++p gk+a+++eL+  ++++a+VGDg+nDa+alaaA+
  KOO21211.1 1206 VKPAGKLAKVQELRDAGAKIAFVGDGINDAPALAAAD 1242
                  **************99********************8 PP

>> E1-E2_ATPase  E1-E2 ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.0       1.1   3.3e+03     148     157 ..     718     727 ..     682     763 .. 0.51
   2 !  125.8   0.4   4.4e-40   1.3e-36      15     143 ..     771     899 ..     752     915 .. 0.94
   3 !   23.0   1.2   1.5e-08   4.5e-05     143     179 ..     981    1017 ..     969    1019 .. 0.83

  Alignments for each domain:
  == domain 1  score: -2.6 bits;  conditional E-value: 1.1
                   HHHHHHHHHH CS
  E1-E2_ATPase 148 llralallva 157
                   ++++ a+l+ 
    KOO21211.1 718 FFETAAVLIT 727
                   4444444433 PP

  == domain 2  score: 125.8 bits;  conditional E-value: 4.4e-40
                   -EEEEGGG--TTSEEEEETT-B--SEEEEEEE-SEEE-TTTS---S-EE-G-TTEE-TT-EEEE-EEEEEEEE-TTTSTTTTTSTTS--------HH CS
  E1-E2_ATPase  15 eeeidakelvpGDivllkagdrvpaDgrivegsaevdesaLTGEslpvekekgdmvfsGtvvvsgeakavVtatgedtelgkiarlveeakskktpl 111
                    +e++++ l+ GD+v++ +g ++paDg ++ g++ v+es++TGEslp  k k+d+v +Gt++ sg + + Vta+g dt+l++i+r v++a+++k+++
    KOO21211.1 771 ATEVPVSGLRKGDVVKVLPGAQMPADGTVLFGESAVNESMITGESLPQPKRKNDKVVGGTINGSGVLYVLVTAVGADTTLAQIMRIVADAQHRKPRI 867
                   468********************************************************************************************** PP

                   HHHHHHHHHHHHHHHHHHHHHHHHS-STTTSS CS
  E1-E2_ATPase 112 qkkldklgkvlvpvvlliallvflialllgks 143
                   q  +d++++v+vpvv+++a+++++++ + g +
    KOO21211.1 868 QAVADRISAVFVPVVITLAIFTWAAWAIAGAT 899
                   **************************987765 PP

  == domain 3  score: 23.0 bits;  conditional E-value: 1.5e-08
                    STTHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHHHH CS
  E1-E2_ATPase  143 slaeallralallvaaiPcaLplavplalalgarrla 179 
                    +   a+++++a+lv+a+PcaL+la+p+a+++g +  a
    KOO21211.1  981 PQLLAFMFGCAVLVIACPCALGLATPTAVMVGGGVGA 1017
                    4448999************************988766 PP

>> Hydrolase_3  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.1   0.0      0.22   6.5e+02      21      59 ..    1164    1202 ..    1156    1206 .. 0.86
   2 !   20.9   0.3   8.4e-08   0.00025     202     243 ..    1221    1262 ..    1207    1272 .. 0.88

  Alignments for each domain:
  == domain 1  score: -0.1 bits;  conditional E-value: 0.22
                   HHHHHHHHHTTSEEEEE-SS-HHHHHHHHHHCCCCSEEE CS
  Hydrolase_3   21 keaikklkekgikvviATGRslravlpvleelgldlpvi 59  
                    +++k+l + g+kv   +G + r++ +++ + g+dl+++
   KOO21211.1 1164 PAVVKQLTQLGMKVWMISGDNERTAAHIAAQAGIDLMYV 1202
                   57899******************************5554 PP

  == domain 2  score: 20.9 bits;  conditional E-value: 8.4e-08
                   -GGGEEEEESSGGGHHHHHHSSEEEEETTS-HHHHHHSSEEE CS
  Hydrolase_3  202 sleeviafGDgeNDieMLeaaglgvAmgnaseevkkaAdyvt 243 
                     ++++ +GDg ND + L aa++g+A+g++++ +++aAd v 
   KOO21211.1 1221 AGAKIAFVGDGINDAPALAAADVGIAVGSGTDVAIEAADVVL 1262
                   5678999********************************997 PP

>> HAD  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.1       0.9   2.7e+03      91     109 ..     268     286 ..     250     290 .. 0.87
   2 !   17.7   0.1   1.2e-06    0.0036      81     187 ..    1155    1238 ..    1124    1239 .. 0.77

  Alignments for each domain:
  == domain 1  score: -1.4 bits;  conditional E-value: 0.9
         HAD  91 lellaahraaGdrvvvvSg 109
                  +l+aa+ a G+++vv S+
  KOO21211.1 268 AALIAAVEATGHPTVVASA 286
                 56788899*********98 PP

  == domain 2  score: 17.7 bits;  conditional E-value: 1.2e-06
         HAD   81 irpklldpgalellaahraaGdrvvvvSgglrplvepllaelgadevlatelevddrltgelglegkpvrgegkvaalrewlaaegegidleevvay 177 
                  ++   l+p+a +++++  + G +v+++Sg +++ +  ++a+ g    ++       ++ ++       v+ +gk+a+++e        ++ +++ ++
  KOO21211.1 1155 VADS-LKPDAPAVVKQLTQLGMKVWMISGDNERTAAHIAAQAG----IDLM-----YVVAG-------VKPAGKLAKVQE------LRDAGAKIAFV 1228
                  3333.7899******999*************************....8873.....44555.......677777888888......5556777999* PP

         HAD  178 GDspsDlpll 187 
                  GD+++D p+l
  KOO21211.1 1229 GDGINDAPAL 1238
                  ********98 PP

>> GFA  Glutathione-dependent formaldehyde-activating enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.1   0.0      0.42   1.2e+03       5      38 ..      13      46 ..      10      57 .. 0.90
   2 ?   -1.2   0.0      0.87   2.6e+03      47      65 ..      76      94 ..      72     113 .. 0.68
   3 ?   -2.2   0.0       1.8   5.3e+03      46      60 ..     154     168 ..     143     187 .. 0.76
   4 ?   -1.9   0.0       1.4   4.3e+03      47      60 ..     225     238 ..     198     252 .. 0.72
   5 ?    5.9   0.0    0.0056        17      18      74 ..     293     348 ..     285     352 .. 0.68

  Alignments for each domain:
  == domain 1  score: -0.1 bits;  conditional E-value: 0.42
         GFA  5 CsdCrkasgsaftanavvkaealellegelkeyk 38
                Cs C++a  + ++    v+a+++ + +g+++++ 
  KOO21211.1 13 CSGCKEAVEAELSQIDGVEAARVDIPTGSVTVWG 46
                9**********************99999999886 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 0.87
         GFA 47 vtrsfCpeCgsplyseesa 65
                v+ ++C +C +++    +a
  KOO21211.1 76 VDGMMCGHCTAKVEQGLQA 94
                56689****9998754444 PP

  == domain 3  score: -2.2 bits;  conditional E-value: 1.8
         GFA  46 kvtrsfCpeCgsply 60 
                 +v+ + C +C +++ 
  KOO21211.1 154 TVRGMSCGHCSAKVE 168
                 566689****99875 PP

  == domain 4  score: -1.9 bits;  conditional E-value: 1.4
         GFA  47 vtrsfCpeCgsply 60 
                 v  ++C++C +++ 
  KOO21211.1 225 VGGMMCDHCTAKVE 238
                 44579999999876 PP

  == domain 5  score: 5.9 bits;  conditional E-value: 0.0056
         GFA  18 anavvkaealellegelkeykktadsgnkvtrsfCpeCgsplyseesaapevvivrv 74 
                 a ++ ++e le  +g + + +  +  + +v+ +fC++C +++  e sa p+v++v+v
  KOO21211.1 293 AGTAGPSEGLE-GTGLTHKHAADSSVTLQVDGMFCEACRATIKRELSALPGVTFVAV 348
                 55555566666.44433333333455566777***********99999999988876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1382 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       602  (0.0335769); expected 358.6 (0.02)
Passed bias filter:                      333  (0.0185733); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.79u 0.27s 00:00:01.06 Elapsed: 00:00:00.45
# Mc/sec: 9264.65
//
Query:       KOO21212.1  [L=432]
Description: hypothetical protein Ctob_004938 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    0.00055   20.6   0.7     0.0012   19.5   0.7    1.6  1  Rubis-subs-bind  Rubisco LSMT substrate-binding
  ------ inclusion threshold ------
       0.15   12.4   0.0       0.26   11.6   0.0    1.4  1  SET              SET domain


Domain annotation for each model (and alignments):
>> Rubis-subs-bind  Rubisco LSMT substrate-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.5   0.7   1.4e-07    0.0012       8     114 ..     247     372 ..     229     418 .. 0.68

  Alignments for each domain:
  == domain 1  score: 19.5 bits;  conditional E-value: 1.4e-07
  Rubis-subs-bind   8 eKlqlLerhglpstqefplkle...egipeeLlaylrvllasekdakeleelask..eedsg.............laseplsddnEaaalrlll 83 
                      ++l+lLe   l++ +  pl ++     ++  Lla +r++ a   +  ele+ ++   +++++              a+e    + + aa++ll+
       KOO21212.1 247 RRLRLLE--ALDAVD-APLAVRpgsLAASGHLLACTRLFAA---SDAELEGEGEGaiAFKENfdpavghhtlcvcGATEEQRMELDRAACELLA 334
                      5556666..333333.445555667788999**********...6777776665523343337788888565555444444444459******* PP

  Rubis-subs-bind  84 drckalLsaypttleeDeellkdadaavtn.......r 114
                       ++ ++L a ptt eeD  ll++   +v +        
       KOO21212.1 335 LAADECLGALPTTAEEDAILLAQTAIDVEEhvgaveaL 372
                      *****************999999877765555554440 PP

>> SET  SET domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   2.9e-05      0.26      95     169 .]      94     198 ..      10     198 .. 0.54

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 2.9e-05
                 X.........XXHCCCCC.....HCCCHEEEETEEEEEECCC.........GTTGGGCEEXSSSSEEEEEEEE................TTSSEEEEEE CS
                 x.........xxxxxxxx.....xxxxxxxxxxxxxxxxxxx.........xxxxxxxxxxxxxxxxxxxxxx................xxxxxxxxxx RF
         SET  95 a.........skpeagaf.....saiagysidaralksgnga.........gplarflNHsCdpNcnltvqnv................lrgprvavfA 154
                 +         sk+ ++ +        ++++++  +                +p+++++NH   p   +++ ++                l+g +v++ A
  KOO21212.1  94 SrtggvysakSKNRDEMRwalsiVYSRSFAVE--DA-----DdesaavrclAPVLDLFNHV--PESPVEYAARwaeqdddddppaspwrLKGSQVELLA 183
                 12222222221111111111222222222233..22.....122234678889*******5..444334444456778888999999999********* PP

                 SSXBXTTEEEEEXTT CS
                 xxxxxxxxxxxxxxx RF
         SET 155 trdIkkGeEltidYg 169
                   d+++G+E+ i Yg
  KOO21212.1 184 YEDVAAGDEVRIPYG 198
                 **********99998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (432 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       318  (0.0177366); expected 358.6 (0.02)
Passed bias filter:                      224  (0.0124937); expected 358.6 (0.02)
Passed Vit filter:                        12  (0.000669307); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.48u 0.22s 00:00:00.70 Elapsed: 00:00:00.40
# Mc/sec: 3247.40
//
Query:       KOO21213.1  [L=310]
Description: hypothetical protein Ctob_004939 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.076   13.3   0.1         17    5.7   0.0    2.6  2  RcbX      RbcX protein
      0.089   12.9   0.0        0.2   11.7   0.0    1.6  1  E2F_TDP   E2F/DP family winged-helix DNA-binding domain


Domain annotation for each model (and alignments):
>> RcbX  RbcX protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.7   0.0    0.0019        17      64      93 ..     140     169 ..     134     181 .. 0.80
   2 ?    4.5   0.0    0.0044        39       8      45 ..     188     227 ..     179     241 .. 0.78

  Alignments for each domain:
  == domain 1  score: 5.7 bits;  conditional E-value: 0.0019
                 -HHHHHHHHHHHHHHHHHHGGGHHHHHHHH CS
        RcbX  64 nkeLalRiltvRehlaeevleflpelvrkg 93 
                  +++ l +++vRe+la   +++l+++++ +
  KOO21213.1 140 PPKVGLQLMAVREDLAGVWVQHLERISTLT 169
                 577899***********9999999987655 PP

  == domain 2  score: 4.5 bits;  conditional E-value: 0.0044
                 HHHHHHHHHHHHHHHHHHHHHHHHHH..SHHHHHHHHHHH CS
        RcbX   8 kdtakvlqsyltYqavrvvlaqLset..npeaaiwLskfs 45 
                  + +++l s  t +avr +l++++    ++e+ +wLs+f 
  KOO21213.1 188 AADSQMLRSVATKVAVREMLSDIAHLpsQKEKHEWLSTFV 227
                 334589*****************98532678899**9996 PP

>> E2F_TDP  E2F/DP family winged-helix DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   2.3e-05       0.2      34      55 ..      68     100 ..      27     103 .. 0.72

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 2.3e-05
     E2F_TDP  34 v...........dkkdekvkkRRiYDilNVLea 55 
                 +           ++++e+ +k R+YD lNVL  
  KOO21213.1  68 QiwlhgkwtkffEEQKEQKQKGRLYDFLNVLRT 100
                 1555566666667888999************75 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (310 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       651  (0.0363099); expected 358.6 (0.02)
Passed bias filter:                      473  (0.0263818); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.44u 0.23s 00:00:00.67 Elapsed: 00:00:00.38
# Mc/sec: 2456.38
//
Query:       KOO21214.1  [L=630]
Description: calpain family cysteine protease containing protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    4.9e-35  121.0   0.0    7.4e-35  120.4   0.0    1.2  1  Peptidase_C2  Calpain family cysteine protease
  ------ inclusion threshold ------
      0.031   14.5   0.0       0.12   12.6   0.0    1.9  2  Calpain_III   Calpain large subunit, domain III


Domain annotation for each model (and alignments):
>> Peptidase_C2  Calpain family cysteine protease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  120.4   0.0   8.3e-39   7.4e-35       1     172 [.     223     404 ..     223     419 .. 0.84

  Alignments for each domain:
  == domain 1  score: 120.4 bits;  conditional E-value: 8.3e-39
  Peptidase_C2   1 feDpeFpaeesslfykkskkkkkkveWkRpkeiven..pk.fivdgasrtdikqGelgdCwllaaiasltlkekllkrvvpkeq.......sf.eek 86 
                   f D  F +  +s++   +++  +++ W+Rp++++++  p   +++ +s  di qGelg  w++ a+asl + +++++ ++ +             ++
    KOO21214.1 223 FIDIFFTPLWRSIGG--EEADARRLAWRRPEQFLDEtvPLgVFLQTVSADDIVQGELGSGWFMCALASLVEFPEMIDSIFGEAWlalseehGRpMHD 317
                   778899999999998..4456789*********997444457899**********************************998766666544114446 PP

  Peptidase_C2  87 yaGifhfrfwrfgewvdvvvDDrlPtv..ngklvfvksaeknefWsalleKAyAklhgsyealkggstsealedftggvtesielelk 172
                    +G++++rf+ +g+w++v++DD lP++  ++ lv+ +  +  e+W++++eKAyAkl+gsy++++ g   e+l d+tg+ t  ++++++
    KOO21214.1 318 DQGLYELRFCMHGQWINVLIDDFLPCKgpTQGLVYSRA-NGPELWVSFIEKAYAKLQGSYSNIRLGLPDEGLLDLTGAPTIRLRFDEA 404
                   79************************632566777776.679*************************************998886443 PP

>> Calpain_III  Calpain large subunit, domain III
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.0      0.37   3.3e+03      17      31 ..     407     421 ..     403     427 .. 0.77
   2 ?   12.6   0.0   1.4e-05      0.12      39     122 ..     490     563 ..     477     569 .. 0.72

  Alignments for each domain:
  == domain 1  score: -1.8 bits;  conditional E-value: 0.37
  Calpain_III  17 etfwkNPqfrlelee 31 
                   +++ NPq+  + ++
   KOO21214.1 407 GSTLANPQYLTSTPD 421
                  57889****987665 PP

  == domain 2  score: 12.6 bits;  conditional E-value: 1.4e-05
  Calpain_III  39 ekkctvlvslmqknrrkerkkgeelltigfavykveeeeenrklrkeffaknqevarsstfinsrevvkrfklppGeYvivPst 122
                    ++t++  l q ++r+ ++    +l++g+ +y++ ++   +  +++      +++++++ +  r+v  +  l +GeYv+vP t
   KOO21214.1 490 AMHETLMFTLSQVDDRSPQS--PGYLDVGLGLYRL-DR--AAGAQSHL-----TLVARTEGSAVRNVLLEAYLAAGEYVLVPLT 563
                  45788999999988888554..4689********5.22..22222222.....23334456789******************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (630 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       357  (0.0199119); expected 358.6 (0.02)
Passed bias filter:                      289  (0.0161191); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.52u 0.21s 00:00:00.73 Elapsed: 00:00:00.37
# Mc/sec: 5056.96
//
Query:       KOO21215.1  [L=480]
Description: gpi-anchored wall transfer [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    9.2e-24   84.3   0.7    2.3e-23   83.0   0.0    2.1  2  GWT1      GWT1


Domain annotation for each model (and alignments):
>> GWT1  GWT1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   83.0   0.0   1.3e-27   2.3e-23       1     149 []     299     422 ..     299     422 .. 0.95
   2 ?   -3.8   0.3       0.7   1.3e+04      55      67 ..     438     450 ..     429     462 .. 0.46

  Alignments for each domain:
  == domain 1  score: 83.0 bits;  conditional E-value: 1.3e-27
        GWT1   1 aNkEGlfsliGylaiyllgvslgkyvlkrekeaeeeekkkkkkkkesketlkllikllllsilllllllllelyvefvSRrlaNlpYvlwvvalnltll 99 
                 aNkEGl sl+G+l i l+g ++  ++ +               + + + + ++l +l++l + l++l+l++++ v++ SRrl+Nl+Y lwv+a+ l  l
  KOO21215.1 299 ANKEGLGSLPGFLGIALMGSAFRDLLRP---------------RGSLEAWRAALRQLAALDVGLWALALAADALVQPASRRLCNLAYALWVLAQVLLAL 382
                 7********************9988883...............34567899************************************************ PP

        GWT1 100 llflliellfvekeeekerkekatstvleainrngLlvFLlaNlltGlvN 149
                 l +ll++l          r     s +le+ nr  L  FLlaN+ltGlvN
  KOO21215.1 383 LGCLLVSL----------RCPLVMSPLLETTNRSPLSAFLLANVLTGLVN 422
                 ********..........88999**************************9 PP

  == domain 2  score: -3.8 bits;  conditional E-value: 0.7
        GWT1  55 ikllllsilllll 67 
                 + ++++s+++ +l
  KOO21215.1 438 VLVVYMSTVVSAL 450
                 2222222222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (480 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       602  (0.0335769); expected 358.6 (0.02)
Passed bias filter:                      257  (0.0143343); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.20s 00:00:00.67 Elapsed: 00:00:00.35
# Mc/sec: 4113.91
//
Query:       KOO21216.1  [L=229]
Description: hypothetical protein Ctob_004929 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
  ------ inclusion threshold ------
      0.061   13.4   1.1          4    7.5   1.1    2.2  1  DUF1896        Domain of unknown function (DUF1896)
        0.1   11.9   0.1       0.22   10.8   0.0    1.5  2  Peptidase_M50  Peptidase family M50
       0.15   11.9   0.2       0.68    9.7   0.2    1.9  1  Peptidase_M41  Peptidase family M41


Domain annotation for each model (and alignments):
>> DUF1896  Domain of unknown function (DUF1896)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.5   1.1   0.00067         4      30      59 ..     184     212 ..     149     221 .. 0.51

  Alignments for each domain:
  == domain 1  score: 7.5 bits;  conditional E-value: 0.00067
                 HHHHHHHHHHHHHHHHHHHT--HHHHHHHH CS
     DUF1896  30 fikeRadeAaeayeeaveeGlsvaeaeela 59 
                 ++++R  +A++a ++a+++G sv e+  + 
  KOO21216.1 184 LLRQR-AAAYDALCDAMRKGRSVGECVMAI 212
                 22222.345666667777777776666555 PP

>> Peptidase_M50  Peptidase family M50
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   3.6e-05      0.22      10      30 ..      59      79 ..      57      85 .. 0.90
   2 ?   -3.0   0.0      0.59   3.5e+03      86      97 ..     122     133 ..     111     139 .. 0.72

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 3.6e-05
                   XXXXXXXXXXXXXXXXXXXXX CS
                   xxxxxxxxxxxxxxxxxxxxx RF
  Peptidase_M50 10 vvvHElGHflvAklcgvkvee 30
                   vv HE GHfl+A   gv v++
     KOO21216.1 59 VVRHEAGHFLCAYSLGVPVQA 79
                   788**************9975 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 0.59
                    XXXXXXXXXXXX CS
                    xxxxxxxxxxxx RF
  Peptidase_M50  86 qrllivlAGpla 97 
                     r++ivlAG +a
     KOO21216.1 122 LRAAIVLAGGIA 133
                    477788887765 PP

>> Peptidase_M41  Peptidase family M41
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   0.2   0.00011      0.68       3      89 ..      51     148 ..      49     159 .. 0.72

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 0.00011
                    --HHHHHHHHHHHHHHHHHHCCSS...S-S-B--..EES--TTS..-----------TSS-....-BHHHHHHHHHHHHHHHHHHHHHHHS-BGGG CS
  Peptidase_M41   3 isekekklvAyHEaGHalvglllk...eadpveK..vtiiPRgq..alGltlslPeedkls....ltkeellarlavllGGraaEelifgevttGa 87 
                    i   ++++v  HEaGH l+++ l    +a +++   +   PR +  + G+ +  P  + l+    ++++++l   +vl GG aaE l  g+   Ga
     KOO21216.1  51 IVPSRREAVVRHEAGHFLCAYSLGvpvQACRLNPlgAPFDPRWSeaSAGTIFLSPAIECLQegrrADEDDVLRAAIVLAGGIAAEALWAGSAEGGA 146
                    55678999999********99875111233333211445688666678888999987766654456777888888899999999999999999999 PP

                    HH CS
  Peptidase_M41  88 sn 89 
                    ++
     KOO21216.1 147 AD 148
                    86 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (229 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       402  (0.0224218); expected 358.6 (0.02)
Passed bias filter:                      250  (0.0139439); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.42u 0.27s 00:00:00.69 Elapsed: 00:00:00.43
# Mc/sec: 1581.18
//
Query:       KOO21217.1  [L=1057]
Description: agc family protein kinase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    6.2e-53  179.8   0.0    8.5e-53  179.4   0.0    1.2  1  Pkinase         Protein kinase domain
    3.3e-24   85.6   0.0    5.2e-24   84.9   0.0    1.3  1  Pkinase_Tyr     Protein tyrosine kinase
    2.1e-15   56.9   0.0     0.0001   22.5   0.0    4.0  4  PAS_9           PAS domain
    6.3e-08   32.6   0.0     0.0022   18.0   0.0    3.6  3  PAS             PAS fold
    3.2e-05   23.4   0.0    5.8e-05   22.5   0.0    1.4  1  Kinase-like     Kinase-like
    4.6e-05   23.6   0.0     0.0049   17.1   0.0    3.2  3  PAS_4           PAS fold
    0.00043   19.2   0.0    0.00083   18.2   0.0    1.4  1  Pkinase_fungal  Fungal protein kinase
     0.0026   17.1   0.7     0.0046   16.3   0.7    1.3  1  Kdo             Lipopolysaccharide kinase (Kdo/WaaP) family
     0.0094   15.9   1.6     0.0094   15.9   1.6    2.3  3  APH             Phosphotransferase enzyme family
     0.0098   16.5   0.0        8.2    7.2   0.0    3.0  3  PAS_2           PAS fold
  ------ inclusion threshold ------
      0.013   15.2   0.1      0.023   14.3   0.1    1.3  1  RIO1            RIO1 family
      0.025   14.2   0.0        1.4    8.4   0.0    2.2  2  FTA2            Kinetochore Sim4 complex subunit FTA2
      0.049   13.7   0.0       0.72    9.9   0.0    2.5  2  PAS_8           PAS domain
       0.23   10.5   0.0       0.38    9.8   0.0    1.2  1  Seadorna_VP7    Seadornavirus VP7


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  179.4   0.0   6.6e-56   8.5e-53       2     253 ..     803    1049 ..     802    1057 .] 0.89

  Alignments for each domain:
  == domain 1  score: 179.4 bits;  conditional E-value: 6.6e-56
                  EEEEEEEEESSEEEEEEEETTTTEEEEEEEEECHCHCHHHHHHHHHHHHHHHHHSCTTB--EEEEEEESSEEEEEEE--TTEBHHHHHHHHSS--HH CS
     Pkinase    2 ekleklGeGsfGkVykaveketgkivAvKkikkekakkkkekkvlrEikilkklkhpnivrlyevfeekdelylvleyveggeladllerkgslsee 98  
                  e ++++ +Gs ++V  +++++t++ +A+K+i+k++ +    +++++E k+l  +++p++v+ + +fe++d lylv+e ++++  +++l+ +g++se+
  KOO21217.1  803 EMVKEIQRGSHATVWLVRKRQTKDVFAMKVIDKRSGRL---NRLQTERKVLFLCSSPFVVKTFFAFEDPDALYLVMERLQQD-CKHVLQVHGAMSEQ 895 
                  6678999**************************98877...468************************************66.************** PP

                  HHHHHHHHHHHHHHHHHHTTEE-SS-SGGGEEEETTTEEEE-SGTTSEESSSSCS.......BCTTTSCGGGS-HHHH..TTSCBSHHHHHHHHHHH CS
     Pkinase   99 eakkiakqilegleylHskgiiHrDlKpeNiLidekgelKitDFGlakelesssk.......ltsfvgtseYlAPEvl..keneyskkvDvWslGvi 186 
                  +a+ +++ +l +le+lH+ gi+HrDlKpeN+L+d  g lK++DFGl+  + ++s          s+vgt+ Y+APE +  k++ +++++D+Ws Gvi
  KOO21217.1  896 HARPVLADLLLALEHLHACGIVHRDLKPENMLLDPAGRLKLADFGLSHIMARQSVraddiakDPSIVGTPFYMAPETIrgKARFFEAAADWWSFGVI 992 
                  ****************************************************998999*998889*************6444445************ PP

                  HHHHHHSS-STTTSSHHHHHHHHHHTHHHHHHHCTSHH...H.HHTTS-HHHHHHHHHHT-SSGCCST CS
     Pkinase  187 lyelltgkppfsgekgkekvekeldqlekilkilgetkeklp.easeiseeakdllkkllkkdpkkRl 253 
                  lye+l g ppf+g k  e ++++l             +++ p  +  +s+e  dl+++ll  dp+ Rl
  KOO21217.1  993 LYEFLLGFPPFQGAKVGEIYRAILSL-----------TFAAPiANCAVSPESADLISRLLVADPRYRL 1049
                  ************55555533333332...........34444044578*****************998 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   84.9   0.0   4.1e-27   5.2e-24       2     221 ..     803    1018 ..     802    1049 .. 0.84

  Alignments for each domain:
  == domain 1  score: 84.9 bits;  conditional E-value: 4.1e-27
                   EEEEEEEEESSEEEEEEEEETTTTSSEEEEEEEEESTTSSHHHHHHHHHHHHHHHTS-BTTB--EEEEEESSSSEEEEEE--TTEBHHHHHHHTCT CS
  Pkinase_Tyr    2 elgkklGeGafGkVvegtlkgekekkevkVavKtlkeeateeekeelleeakimkklkhpnivkllgvctkeepllivteyvkgGdLlkfLrkkek 97  
                   e+ k++ +G+ ++V+  + +    +++   a+K++++++   + ++l +e k++  ++ p +vk   +  + + l++v+e +++ d ++ L+ +  
   KOO21217.1  803 EMVKEIQRGSHATVWLVRKR----QTKDVFAMKVIDKRSG--RLNRLQTERKVLFLCSSPFVVKTFFAFEDPDALYLVMERLQQ-DCKHVLQVH-- 889 
                   57789999999999988877....788889*****55544..4699***********************************998.7799***99.. PP

                   TTSBHHHHHHHHHHHHHHHHHHHHTTEEEST-SGGGEEEEETTEEEE-STTTHEETTTSSEE....EETTSSTSGGGGS-HHHHHHSE..EEHHHH CS
  Pkinase_Tyr   98 ekltlkdllsfalqvAkGmeyLeskklvHrdlaarNvLlsenkvvkisDfGLardiekddey....vkkeeaklpvkWmapEslkekk..ftsksD 187 
                    +++ ++   + +++  ++e+L++  +vHrdl   N+Ll+     k++DfGL++ + +++       k+ +      +mapE+++ k   f+ ++D
   KOO21217.1  890 GAMSEQHARPVLADLLLALEHLHACGIVHRDLKPENMLLDPAGRLKLADFGLSHIMARQSVRaddiAKDPSIVGTPFYMAPETIRGKArfFEAAAD 985 
                   9999***********************************************99877444333222266666667789*******988888****** PP

                   HHHHHHHHHHHHTTSSGTTTTSHHHHHHHHHHTT CS
  Pkinase_Tyr  188 vWsfGvllwEiftlgespypglkneevleklkeg 221 
                    WsfGv+l+E +  g  p++g k  e+++++ + 
   KOO21217.1  986 WWSFGVILYEFLL-GFPPFQGAKVGEIYRAILSL 1018
                   **********887.********999999988654 PP

>> PAS_9  PAS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.5   0.0   8.2e-08    0.0001      13      86 ..      25      98 ..      15     112 .. 0.86
   2 !    6.7   0.0    0.0066       8.4       8      40 ..     274     306 ..     270     334 .. 0.85
   3 ?   -1.0   0.0       1.6     2e+03      49      85 ..     371     408 ..     354     425 .. 0.76
   4 !   22.0   0.0   1.2e-07   0.00015      10      99 ..     472     574 ..     466     577 .. 0.81

  Alignments for each domain:
  == domain 1  score: 22.5 bits;  conditional E-value: 8.2e-08
       PAS_9 13 ilyaNeaalrllGyspeevlgksitdlfvtdpeanerlraaleqgrk..kerevevvlirkngetfwvlltaspvk 86
                i+ aNea+++ +Gy ++e+lg++++ l+  ++     l +al++ +    +   ev+l rk+g +  + ++asp++
  KOO21217.1 25 IIAANEAFCDHIGYVEAELLGQPLRRLQ--PQTVSGSLINALQAQQAgsGFSVHEVHLLRKSGAEERATIRASPLY 98
                88**************************..999999999999999999999999*********9999999999994 PP

  == domain 2  score: 6.7 bits;  conditional E-value: 0.0066
       PAS_9   8 npdgrilyaNeaalrllGyspeevlgksitdlf 40 
                 +p + i ++++++++llG  +++++g++++ l 
  KOO21217.1 274 DPGHYIWHVSPGLEQLLGKMADDLIGQDVSALS 306
                 5667788***********99********99887 PP

  == domain 3  score: -1.0 bits;  conditional E-value: 1.6
       PAS_9  49 rlraaleqgrk.kerevevvlirkngetfwvlltaspv 85 
                  lr+++e+      +  ev+l  ++g ++++l+ + p+
  KOO21217.1 371 PLRELFEAVAAqRNCLIEVILPSESGAPLFCLAYVLPL 408
                 45555555555559999*************99998887 PP

  == domain 4  score: 22.0 bits;  conditional E-value: 1.2e-07
       PAS_9  10 dgrilyaNeaalrllGyspeevlgksitdlf...........vtdpeanerlraaleqgrk.kerevevvlirkngetfwvlltaspvkdd.dgelvgi 95 
                  ++i++a+ ++  + G  p ev++++++ l+           + +   +e ++++  +++  +e    +++ rk+g++f +ll ++p+ d  +g++ ++
  KOO21217.1 472 RNPIVFASAGFGVMCGCAPHEVMHRNCRFLQspsfveskpgvDASFPQHEAVAHMSAALDArHESLTYLHNFRKDGSPFANLLFMTPILDRaGGGVLFW 570
                 56899***************************9999987777333333333333333333367*************************99988888888 PP

       PAS_9  96 ivil 99 
                 ++++
  KOO21217.1 571 VGVQ 574
                 8775 PP

>> PAS  PAS fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.0   0.0   1.7e-06    0.0022      14     108 ..      16     106 ..      12     110 .. 0.86
   2 ?   -0.4   0.0      0.89   1.1e+03      23      48 ..     279     304 ..     272     310 .. 0.83
   3 !    9.2   0.0   0.00089       1.1      23     106 ..     475     567 ..     461     576 .. 0.80

  Alignments for each domain:
  == domain 1  score: 18.0 bits;  conditional E-value: 1.7e-06
                 EEEEETTSBEEEECHHHHHHHSSTHHHCTTSBGGGGBSTTHHHHHHHHHHHHHHHTT-ECCCCEEEEC...TTSSEEEEEEEEEEEEETTEEEEEEEE CS
         PAS  14 ifvvDedgrilyvNaaaeellGlsreevlgkslldliheeddaelaelleqlleqgeesrageisfkl...rdgrpihlevraspvrdaggeilgflg 108
                  +v      i+ +N+a+++  G+ + e+lg++l +l + +    +   l ++l++++ ++++ + +     + g +  + +rasp+++++    g+l+
  KOO21217.1  16 LVVSSPAALIIAANEAFCDHIGYVEAELLGQPLRRLQPQT----VSGSLINALQAQQAGSGFSVHEVHllrKSGAEERATIRASPLYCIET---GALL 106
                 4455588999****************************99....*****************999888888899999999999999999876...6655 PP

  == domain 2  score: -0.4 bits;  conditional E-value: 0.89
                 EEEECHHHHHHHSSTHHHCTTSBGGG CS
         PAS  23 ilyvNaaaeellGlsreevlgkslld 48 
                 i +v++  e+llG  +++++g+ ++ 
  KOO21217.1 279 IWHVSPGLEQLLGKMADDLIGQDVSA 304
                 567888899*************9875 PP

  == domain 3  score: 9.2 bits;  conditional E-value: 0.00089
                 EEEECHHHHHHHSSTHHHCTTSBGGGGBSTTHHH.............HHHHHHHHHHHHTT-ECCCCEEEECTTSSEEEEEEEEEEEEETTEEEEEE CS
         PAS  23 ilyvNaaaeellGlsreevlgkslldliheedda.............elaelleqlleqgeesrageisfklrdgrpihlevraspvrdaggeilgf 106
                 i++++a +  ++G ++ ev++++   ++  ++               e +++++ +l +++es ++ ++f++ dg+p+  ++ ++p++d+ g    +
  KOO21217.1 475 IVFASAGFGVMCGCAPHEVMHRNCR-FLQSPSFVeskpgvdasfpqhEAVAHMSAALDARHESLTYLHNFRK-DGSPFANLLFMTPILDRAGGG--V 567
                 7788888888888888888888877.444444556777777778888999**********************.****************99963..3 PP

>> Kinase-like  Kinase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.5   0.0   4.6e-08   5.8e-05     138     189 ..     890     940 ..     864     996 .. 0.79

  Alignments for each domain:
  == domain 1  score: 22.5 bits;  conditional E-value: 4.6e-08
  Kinase-like 138 hkkletiarlllTlqlirlaanLqakglvhgkftvdnllldekgglmlggft 189
                   +  e++ar +l ++l+    +L+a g+vh +++++n+lld+ g+l+l +f+
   KOO21217.1 890 GAMSEQHARPVL-ADLLLALEHLHACGIVHRDLKPENMLLDPAGRLKLADFG 940
                  445688999999.78888899*****************************96 PP

>> PAS_4  PAS fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   0.0   3.9e-06    0.0049      11      89 ..      18      98 ..      12     110 .. 0.80
   2 ?   -1.4   0.0       2.2   2.8e+03      49      93 ..     369     412 ..     356     425 .. 0.79
   3 ?    2.1   0.0      0.17   2.2e+02      50      99 ..     521     571 ..     485     579 .. 0.76

  Alignments for each domain:
  == domain 1  score: 17.1 bits;  conditional E-value: 3.9e-06
       PAS_4 11 l.dpdgrvlyaNaaaaelfgappeellGktlaellpeedaarleralrrvlegeepiefleelll..pgeerhyelrllPlr 89
                + +p   +++aN+a+++++g+  +ellG++l+ l p+ + + l +al++  +g    + +e++ll  +g+e+   +r++Pl 
  KOO21217.1 18 VsSPAALIIAANEAFCDHIGYVEAELLGQPLRRLQPQTVSGSLINALQAQQAG-SGFSVHEVHLLrkSGAEERATIRASPLY 98
                33777779******************************888888888776666.4555555555568***********9996 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 2.2
       PAS_4  49 aarleralrrvlegeepiefleelllpgeerhyelrllPlrdesG 93 
                   +l++  ++v++++  +++++ +  +g++ +++  +lPl + +G
  KOO21217.1 369 SSPLRELFEAVAAQRNCLIEVILPSESGAPLFCLAYVLPL-ACKG 412
                 56788888888888888888888888999*****999999.5666 PP

  == domain 3  score: 2.1 bits;  conditional E-value: 0.17
       PAS_4  50 arleralrrvlegeepiefleelllpgeerhyelrllPlrdesGe.vigvl 99 
                 +++++  +++ + +e+++ l+  + +g++   +l+++P++d+ G+ v++++
  KOO21217.1 521 EAVAHMSAALDARHESLTYLHNFRKDGSPFANLLFMTPILDRAGGgVLFWV 571
                 44555555555566666666666669999999************9565555 PP

>> Pkinase_fungal  Fungal protein kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.2   0.0   6.5e-07   0.00083     310     388 ..     899     975 ..     886     992 .. 0.85

  Alignments for each domain:
  == domain 1  score: 18.2 bits;  conditional E-value: 6.5e-07
  Pkinase_fungal 310 ealrDaIkghrsLflkagiLHrDiSenNilitdskkegerkglLiDLDlakelsddssesga....rertGTleFmaievlkg 388
                      +l+D + +++ L+  +gi+HrD   +N+l+      +  +  L+D+ l   ++++s ++++       +GT+ +ma e ++g
      KOO21217.1 899 PVLADLLLALEHLH-ACGIVHRDLKPENMLLD-----PAGRLKLADFGLSHIMARQSVRADDiakdPSIVGTPFYMAPETIRG 975
                     689***********.**************999.....788999*****999999988777545555889********999886 PP

>> Kdo  Lipopolysaccharide kinase (Kdo/WaaP) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.7   3.6e-06    0.0046      94     167 ..     873     940 ..     869     957 .. 0.88

  Alignments for each domain:
  == domain 1  score: 16.3 bits;  conditional E-value: 3.6e-06
         Kdo  94 llterlegaqdLedllakwaelaeelkrallkavgrliaklhragvnHadlyaknillqqeeeeeaeiwliDld 167
                 l++erl+  qd + +l+ +  ++e+  r  l ++  + + lh+ g+ H+dl + n+ll+ ++    ++ l D+ 
  KOO21217.1 873 LVMERLQ--QDCKHVLQVHGAMSEQHARPVLADLLLALEHLHACGIVHRDLKPENMLLDPAG----RLKLADFG 940
                 8899996..8999****9888***************************************99....88888875 PP

>> APH  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.1       3.1   3.9e+03      85     104 ..     181     248 ..     144     300 .. 0.50
   2 ?   -2.4   0.0       2.9   3.7e+03      99     108 ..     601     613 ..     529     667 .. 0.64
   3 !   15.9   1.6   7.4e-06    0.0094     135     198 ..     886     944 ..     763     948 .. 0.72

  Alignments for each domain:
  == domain 1  score: -2.5 bits;  conditional E-value: 3.1
                 HHHHHHHHHHHHHHHHHHC................................................C CS
         APH  85 klsaaqlpellealgefla................................................a 104
                 +  aa+++++++ +++f a                                                 
  KOO21217.1 181 AAAAAVAERQAGHAADFGAsdddgsgdegdgrnglplpplpvneataraawsvlcasvlqksmfsnvL 248
                 44455666666666666654444444444444444444444444444444444444444444444443 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 2.9
                 HHHHC...CHHCH CS
         APH  99 gefla...alhqv 108
                 ++++    alh+v
  KOO21217.1 601 AQLRScgsALHAV 613
                 2222222222222 PP

  == domain 3  score: 15.9 bits;  conditional E-value: 7.4e-06
                 CCCGCCTCCHHHHHHHH....HHHHHHHH--SSS-EEEE-SS-SGGGEEEC..TTEEEEE---TT-EE CS
         APH 135 rllaselldlleeleeq....vlaalaallpgelptvllHgDlhpgNllvdpddgrvtGviDfedagl 198
                  ++         ++ eq    vla l+  l    + +++H+Dl+p N+l+dp+ gr+  + Df+++++
  KOO21217.1 886 LQV-------HGAMSEQharpVLADLLLALEHLHACGIVHRDLKPENMLLDPA-GRL-KLADFGLSHI 944
                 233.......333333343333444443333378999**************77.554.3778877766 PP

>> PAS_2  PAS fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.7   0.0     0.018        23      19      73 ..      16      70 ..      13      95 .. 0.82
   2 !    7.2   0.0    0.0064       8.2      20      58 ..     271     309 ..     269     315 .. 0.89
   3 ?   -2.8   0.0       7.8     1e+04      57      95 ..     520     556 ..     516     558 .. 0.74

  Alignments for each domain:
  == domain 1  score: 5.7 bits;  conditional E-value: 0.018
                EEEETTTTEEEEEETTHHHHCSS-CCCCTTTCCCCCSECTTHHHHCCHS-CCCHC CS
       PAS_2 19 lavdekslrvlqvSeNaaemLglteekllgtdlralltassaalLekalsareis 73
                l+v  +   ++++ e   +  g +e++llg++lr l  +    +L +al+a++  
  KOO21217.1 16 LVVSSPAALIIAANEAFCDHIGYVEAELLGQPLRRLQPQTVSGSLINALQAQQAG 70
                789999999***************************9999888888888877654 PP

  == domain 2  score: 7.2 bits;  conditional E-value: 0.0064
                 EEETTTTEEEEEETTHHHHCSS-CCCCTTTCCCCCSECT CS
       PAS_2  20 avdekslrvlqvSeNaaemLglteekllgtdlralltas 58 
                  v+++   + +vS   +++Lg ++++l+g+d++al  + 
  KOO21217.1 271 QVQDPGHYIWHVSPGLEQLLGKMADDLIGQDVSALSAPR 309
                 58889999*************************997765 PP

  == domain 3  score: -2.8 bits;  conditional E-value: 7.8
                 CTTHHHHCCHS-CCCHCCCCCEEEE.EEECCCEEEEEEEE CS
       PAS_2  57 assaalLekalsareisllnpilih.srtsgkpfyailhr 95 
                 ++ +a +++al ar++sl   + +h +r++g pf  +l++
  KOO21217.1 520 HEAVAHMSAALDARHESL---TYLHnFRKDGSPFANLLFM 556
                 567788888999999886...3334488999999888775 PP

>> RIO1  RIO1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   0.1   1.8e-05     0.023      83     150 ..     873     940 ..     869     953 .. 0.89

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 1.8e-05
                 EEEE--EETTEEGGBHHHCG-HHHHHHHHHHHHHHHHHHHHTSTEEESS-STTSEEEETT.EEEE--GT CS
        RIO1  83 lvmefigedgvaapklkdveeeeeaeelyeevleemrklykeaglvHaDLSeyNvlvded.kvviIDvs 150
                 lvme +++d  ++ +++ + +e++a+ +++++l +++ l   +g+vH DL   N+l+d   ++ + D++
  KOO21217.1 873 LVMERLQQDCKHVLQVHGAMSEQHARPVLADLLLALEHLH-ACGIVHRDLKPENMLLDPAgRLKLADFG 940
                 9****************9999999*********9888877.****************988778777775 PP

>> FTA2  Kinetochore Sim4 complex subunit FTA2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.3   0.0     0.043        55      22      53 ..     800     833 ..     782     860 .. 0.82
   2 ?    8.4   0.0    0.0011       1.4     178     204 ..     901     927 ..     885     942 .. 0.80

  Alignments for each domain:
  == domain 1  score: 3.3 bits;  conditional E-value: 0.043
        FTA2  22 kdiefleyLgkglhsiVlkvkirgk..eYALKlF 53 
                 +d+e+++ +++g h+ V+ v+ r+   ++A+K+ 
  KOO21217.1 800 ADFEMVKEIQRGSHATVWLVRKRQTkdVFAMKVI 833
                 6899****************99877668999974 PP

  == domain 2  score: 8.4 bits;  conditional E-value: 0.0011
        FTA2 178 lpkllrdlkklhklgIvvrDlkeenyi 204
                 l +ll  l+ lh++gIv+rDlk+en++
  KOO21217.1 901 LADLLLALEHLHACGIVHRDLKPENML 927
                 56788899****************987 PP

>> PAS_8  PAS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   0.0   0.00056      0.72      22      50 ..      24      53 ..       8      69 .. 0.76
   2 ?    0.3   0.0       0.6   7.6e+02      23      45 ..     279     302 ..     267     316 .. 0.74

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.00056
       PAS_8 22 rivdvNqaalellG.ysadlkgellgqllp 50
                +i+ +N+a+++  G ++a+l+g++l++l p
  KOO21217.1 24 LIIAANEAFCDHIGyVEAELLGQPLRRLQP 53
                59************4448888888865444 PP

  == domain 2  score: 0.3 bits;  conditional E-value: 0.6
       PAS_8  23 ivdvNqaalellGys..adlkgell 45 
                 i +v +  ++llG +  +dl+g+++
  KOO21217.1 279 IWHVSPGLEQLLG-KmaDDLIGQDV 302
                 66799999*****.86666666655 PP

>> Seadorna_VP7  Seadornavirus VP7
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   0.0    0.0003      0.38     153     187 ..     907     939 ..     897     953 .. 0.83

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.0003
  Seadorna_VP7 153 dLmdfhsestnllhGDcnpenlmcDknGylklvDP 187
                   +L+++h    +++h D +pen++ D+ G lkl D 
    KOO21217.1 907 ALEHLH--ACGIVHRDLKPENMLLDPAGRLKLADF 939
                   455555..899*********************995 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1057 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       645  (0.0359752); expected 358.6 (0.02)
Passed bias filter:                      407  (0.0227007); expected 358.6 (0.02)
Passed Vit filter:                        48  (0.00267723); expected 17.9 (0.001)
Passed Fwd filter:                        14  (0.000780858); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              14  [number of targets reported over threshold]
# CPU time: 0.77u 0.28s 00:00:01.05 Elapsed: 00:00:00.44
# Mc/sec: 7151.61
//
Query:       KOO21218.1  [L=671]
Description: peptidyl-glycine alpha-amidating monooxygenase isoform 3 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    4.4e-21   73.8   2.5    3.7e-09   36.2   0.1    4.4  3  NHL             NHL repeat
    1.2e-13   50.9   0.0      2e-13   50.2   0.0    1.2  1  Cu2_monoox_C    Copper type II ascorbate-dependent monooxygen
    1.4e-06   28.1   0.2      0.048   13.2   0.2    2.4  2  SGL             SMP-30/Gluconolactonase/LRE-like region
    1.3e-05   25.4   0.0    3.1e-05   24.2   0.0    1.6  1  Cu2_monooxygen  Copper type II ascorbate-dependent monooxygen
  ------ inclusion threshold ------
      0.054   13.8   0.0       0.44   10.8   0.0    2.5  2  US22            US22 like
      0.062   12.5   0.1        7.5    5.6   0.1    2.9  2  DUF839          Bacterial protein of unknown function (DUF839
      0.077   12.1   0.0       0.15   11.2   0.0    1.4  1  DUF5128         6-bladed beta-propeller
      0.079   13.0   0.2          3    7.9   0.0    2.9  2  SBBP            Beta-propeller repeat
       0.11   12.3   0.1        0.3   11.0   0.1    1.7  1  DUF1952         Domain of unknown function (DUF1952)


Domain annotation for each model (and alignments):
>> NHL  NHL repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.7   0.0   0.00021      0.43       1      26 [.     399     424 ..     399     426 .. 0.93
   2 !   23.8   0.0   1.5e-08     3e-05       1      28 []     448     477 ..     448     477 .. 0.97
   3 !   36.2   0.1   1.9e-12   3.7e-09       1      28 []     497     524 ..     497     524 .. 0.98

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00021
                 BSSEEEEEEETTTEEEEEECCCTEEE CS
         NHL   1 fnyPhGvavdsnGdiyVaDsenhrvq 26 
                 f  PhG+++d  G ++ +D   hr++
  KOO21218.1 399 FTVPHGLSIDHHGKLWATDVAQHRIF 424
                 678*********************97 PP

  == domain 2  score: 23.8 bits;  conditional E-value: 1.5e-08
                 BSSEEEEEEE.TTTEEEEEE.CCCTEEEEE CS
         NHL   1 fnyPhGvavd.snGdiyVaD.senhrvqvF 28 
                 f  P++vav+ ++ +++VaD ++n+rv v+
  KOO21218.1 448 FDKPTDVAVNaQTEEVFVADgYGNSRVAVY 477
                 789*************************98 PP

  == domain 3  score: 36.2 bits;  conditional E-value: 1.9e-12
                 BSSEEEEEEETTTEEEEEECCCTEEEEE CS
         NHL   1 fnyPhGvavdsnGdiyVaDsenhrvqvF 28 
                 f+ Ph++++d+ Gd+yVaD+en+rvqvF
  KOO21218.1 497 FRVPHSIVIDKRGDVYVADRENSRVQVF 524
                 889************************9 PP

>> Cu2_monoox_C  Copper type II ascorbate-dependent monooxygenase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.2   0.0     1e-16     2e-13      34     134 ..     209     309 ..     205     326 .. 0.85

  Alignments for each domain:
  == domain 1  score: 50.2 bits;  conditional E-value: 1e-16
  Cu2_monoox_C  34 ectkvalpeegihifasrlHtHllgkkvstyrvreg.kelellgkddpysphyQeirplekevkvkkGDalaarCtynted.rekvtlgGlti.edE 127
                   ec+   + + g   +a r H+H+l++ +   ++ ++ + l++lg  + ++p  Q +r l ++  +  GDal+ +C y+ +   +++t+ G+++ + E
    KOO21218.1 209 ECVACRVAHGG-VAVAWRNHAHRLARDIYSEHFDREgQPLPQLGFISAQQP--QIFRLLPETRPLSTGDALLLHCNYDATAiTDHITYLGADErTHE 302
                   56666664444.4689****************96544**************..************************977636789****976279* PP

  Cu2_monoox_C 128 MCvfYim 134
                   MC+ Y+m
    KOO21218.1 303 MCNQYLM 309
                   ******9 PP

>> SGL  SMP-30/Gluconolactonase/LRE-like region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.2   0.0     5e-05       0.1     138     218 ..     350     434 ..     340     441 .. 0.73
   2 !   13.2   0.2   2.4e-05     0.048     139     219 ..     454     533 ..     442     540 .. 0.79

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 5e-05
         SGL 138 GlawspdgktlYlaDsltrkiwaydvdaeggklsnrrvfadlkkge.....gepDGlavDaeGnvwvAvwgggkvvrfdpdGklie 218
                 Gla++ +++tlY  +   ++ ++  +  +++ + +  ++  ++k+       +p Gl +D +G++w++ ++++++ r+dp  +++e
  KOO21218.1 350 GLAFDDATNTLYAFHRSGNTFVSSALI-QQPAILAFSLLGAITKKLsrnvfTVPHGLSIDHHGKLWATDVAQHRIFRIDPTRDVVE 434
                 677777777777766666666666663.333366666664444444566776799*************************987665 PP

  == domain 2  score: 13.2 bits;  conditional E-value: 2.4e-05
         SGL 139 lawspdgktlYlaDsltrk.iwaydvdaeggklsnrrvfadlkkgegepDGlavDaeGnvwvAvwgggkvvrfdpdGkliee 219
                 +a++++++ +++aD   ++ + +y +d  g++l +  ++ + + +  +p ++++D+ G v+vA  ++++v++f ++G+  ++
  KOO21218.1 454 VAVNAQTEEVFVADGYGNSrVAVYRYD--GTYLREFGTVGNADGQFRVPHSIVIDKRGDVYVADRENSRVQVFYTNGTHKAT 533
                 678888999999999887669999996..6656666655444444467*****************************97665 PP

>> Cu2_monooxygen  Copper type II ascorbate-dependent monooxygenase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.2   0.0   1.6e-08   3.1e-05      37     126 ..      81     164 ..      70     167 .. 0.69

  Alignments for each domain:
  == domain 1  score: 24.2 bits;  conditional E-value: 1.6e-08
  Cu2_monooxygen  37 epiiqkgneelvhhmllyeCe.eeeeeeeveesggeCyssekkpeelesCse..viaawavg.......aeaftlPeevGlpiGgdssskylvLe 121
                     +p +   n+e+vhhm++++ + ++++++  + ++               C +  +++awa+         +  +   + G++iG  +s++++ L+
      KOO21218.1  81 QPEV---NMEIVHHMIMFAGKgSRSSRTLQRANSPM-------------CDQgqIVYAWARTgqttpigLDFAEAAGDLGFAIGPGTSYEWFALQ 159
                     5666...99***********5322233333333333.............554459*****98333333222334556789*************** PP

  Cu2_monooxygen 122 vHYnn 126
                     +HY+ 
      KOO21218.1 160 IHYQQ 164
                     ***86 PP

>> US22  US22 like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.0       2.3   4.5e+03     100     117 ..     225     244 ..     163     248 .. 0.65
   2 ?   10.8   0.0   0.00022      0.44      64     103 ..     484     521 ..     300     525 .. 0.90

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 2.3
        US22 100 ddevyrlAasL..seFlraG 117
                 +++ +rlA+++  ++F r+G
  KOO21218.1 225 RNHAHRLARDIysEHFDREG 244
                 45677777775335666555 PP

  == domain 2  score: 10.8 bits;  conditional E-value: 0.00022
        US22  64 lavvGtvavgptamagpaalvvlldelgaVygydplddev 103
                 l  +Gtv++ ++++++p    +++d+ g Vy+ d+++  v
  KOO21218.1 484 LREFGTVGNADGQFRVP--HSIVIDKRGDVYVADRENSRV 521
                 4558*************..59*************988765 PP

>> DUF839  Bacterial protein of unknown function (DUF839)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.6   0.0     0.031        62     427     458 ..     391     421 ..     353     444 .. 0.78
   2 ?    5.6   0.1    0.0037       7.5     345     374 ..     444     473 ..     428     533 .. 0.78

  Alignments for each domain:
  == domain 1  score: 2.6 bits;  conditional E-value: 0.031
      DUF839 427 aessegndlespDnlafdpaGrlwiatDgsgs 458
                 +++ + n++  p +l +d +G+lw atD +++
  KOO21218.1 391 TKKLSRNVFTVPHGLSIDHHGKLW-ATDVAQH 421
                 55667899****************.5777764 PP

  == domain 2  score: 5.6 bits;  conditional E-value: 0.0037
      DUF839 345 GatkmdrpEdievnPttgevyvvltnnkkr 374
                  at++d+p d++vn +t ev+v++  +++r
  KOO21218.1 444 SATQFDKPTDVAVNAQTEEVFVADGYGNSR 473
                 59999****************999888866 PP

>> DUF5128  6-bladed beta-propeller
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   7.7e-05      0.15      63     126 ..     461     524 ..     454     533 .. 0.87

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 7.7e-05
     DUF5128  63 krifvlDsaknn.lfvFdkkGkfvrkIgaqGeGPgEYlqindfiidksnesIyildfmknkiltY 126
                 + +fv D + n  + v+  +G + r+ g  G+  g +   ++++idk    +y+ d+ ++++ ++
  KOO21218.1 461 EEVFVADGYGNSrVAVYRYDGTYLREFGTVGNADGQFRVPHSIVIDKRG-DVYVADRENSRVQVF 524
                 6789*****9766*********************************887.899999988877665 PP

>> SBBP  Beta-propeller repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.7   0.0      0.13   2.6e+02      14      27 ..     347     361 ..     339     362 .. 0.80
   2 ?    7.9   0.0    0.0015         3      15      29 ..     500     514 ..     483     514 .. 0.87

  Alignments for each domain:
  == domain 1  score: 1.7 bits;  conditional E-value: 0.13
        SBBP  14 ygngIavDsnGN.iY 27 
                 +++g+a+D+  N  Y
  KOO21218.1 347 QITGLAFDDATNtLY 361
                 89********99665 PP

  == domain 2  score: 7.9 bits;  conditional E-value: 0.0015
        SBBP  15 gngIavDsnGNiYvt 29 
                 +++I +D+ G +Yv+
  KOO21218.1 500 PHSIVIDKRGDVYVA 514
                 89************7 PP

>> DUF1952  Domain of unknown function (DUF1952)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.1   0.00015       0.3      11      70 ..     482     541 ..     479     544 .. 0.78

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00015
     DUF1952  11 dyleeWGaveedeGvyrldGavvrfrelePlkvGslrisrleve.veGeeaerWaeriava 70 
                  yl+e+G+v + +G +r++ ++v  +      v   + sr++v   +G     W  r+a +
  KOO21218.1 482 TYLREFGTVGNADGQFRVPHSIVIDKR-GDVYVADRENSRVQVFyTNGTHKATWLSRVATG 541
                 6******************99996554.445677778888887425788888888888876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (671 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       442  (0.0246528); expected 358.6 (0.02)
Passed bias filter:                      405  (0.0225891); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.60u 0.29s 00:00:00.88 Elapsed: 00:00:00.44
# Mc/sec: 4620.18
//
Query:       KOO21219.1  [L=94]
Description: hypothetical protein Ctob_007521 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (94 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       792  (0.0441742); expected 358.6 (0.02)
Passed bias filter:                      371  (0.0206927); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.24s 00:00:00.60 Elapsed: 00:00:00.40
# Mc/sec: 713.48
//
Query:       KOO21220.1  [L=538]
Description: hypothetical protein Ctob_007522 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (538 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       482  (0.0268838); expected 358.6 (0.02)
Passed bias filter:                      347  (0.0193541); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.51u 0.24s 00:00:00.75 Elapsed: 00:00:00.39
# Mc/sec: 4128.98
//
Query:       KOO21221.1  [L=466]
Description: hypothetical protein Ctob_007523 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    7.3e-07   29.5   6.6    7.3e-07   29.5   6.6    1.8  2  Notch     LNR domain


Domain annotation for each model (and alignments):
>> Notch  LNR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.5   6.6   4.1e-11   7.3e-07       3      35 ..     300     331 ..     298     332 .. 0.94
   2 ?   -3.7   0.7         1   1.8e+04      32      36 .]     380     384 ..     380     384 .. 0.85

  Alignments for each domain:
  == domain 1  score: 29.5 bits;  conditional E-value: 4.1e-11
       Notch   3 qCsaeeyCaekf.gdgvCDeeCnneeClfDGgDC 35 
                 +Cs  ++C + +  dgvCD+ Cn   C++D gDC
  KOO21221.1 300 TCS--PGCMAEWlSDGVCDRLCNVTRCEYDHGDC 331
                 799..79**9999********************* PP

  == domain 2  score: -3.7 bits;  conditional E-value: 1
       Notch  32 GgDCs 36 
                 GgDC+
  KOO21221.1 380 GGDCE 384
                 89**6 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (466 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       422  (0.0235373); expected 358.6 (0.02)
Passed bias filter:                      298  (0.0166211); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.27s 00:00:00.75 Elapsed: 00:00:00.42
# Mc/sec: 3312.68
//
Query:       KOO21222.1  [L=315]
Description: wd40 repeat-containing protein, partial [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
      7e-20   71.0   8.5    2.2e-05   25.1   0.1    4.5  4  WD40         WD domain, G-beta repeat
    5.3e-14   52.3   0.1    4.6e-05   23.6   0.0    4.2  4  ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain
      7e-05   21.9   2.0      0.002   17.1   0.3    2.4  2  PALB2_WD40   Partner and localizer of BRCA2 WD40 domain
     0.0014   18.3   0.3     0.0032   17.1   0.3    1.7  1  PQQ_2        PQQ-like domain
  ------ inclusion threshold ------
      0.069   13.1   0.2       0.42   10.6   0.0    2.4  3  PQQ          PQQ enzyme repeat


Domain annotation for each model (and alignments):
>> WD40  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.2   4.9e-06     0.017       2      38 .]       8      46 ..       7      46 .. 0.87
   2 !   15.9   0.0   4.9e-06     0.017       7      36 ..     113     140 ..     104     140 .. 0.83
   3 !   16.4   0.2   3.4e-06     0.012      12      38 .]     200     234 ..     190     234 .. 0.66
   4 !   25.1   0.1   6.2e-09   2.2e-05       5      35 ..     243     274 ..     240     276 .. 0.84

  Alignments for each domain:
  == domain 1  score: 15.9 bits;  conditional E-value: 4.9e-06
                EEEEEEESSSS.EEEEEEETTSSEEE.EEETTSEEEEEE CS
        WD40  2 qclrtltGHss.vtslafspdgawla.sGsdDgtvriWd 38
                + ++tl GH++ v +l ++p    la sG++D  + +Wd
  KOO21222.1  8 TYQGTLQGHTDlVFCLVTHPTIEHLAaSGGKDAAIVLWD 46
                56899****7779***99999999974889********9 PP

  == domain 2  score: 15.9 bits;  conditional E-value: 4.9e-06
                 EESSSSEEEEEEETTSSEEEEEETTSEEEE CS
        WD40   7 ltGHssvtslafspdgawlasGsdDgtvri 36 
                  +GH  v+++   pdg+ l+ G  Dg+vr+
  KOO21222.1 113 PRGH--VSCVHCAPDGNALLVGAADGSVRM 140
                 4799..9999999*****999*99****96 PP

  == domain 3  score: 16.4 bits;  conditional E-value: 3.4e-06
                 S.....EEEEE...EETTSSEEEEEETTSEEEEEE CS
        WD40  12 s.....vtsla...fspdgawlasGsdDgtvriWd 38 
                 +     v++++    +++++ l++G dD tvr+Wd
  KOO21222.1 200 PlegknVNGVSaawAHHSHSTLLTGADDATVRLWD 234
                 355555888877764444444679**********9 PP

  == domain 4  score: 25.1 bits;  conditional E-value: 6.2e-09
                 EEEESS.SSEEEEEEETTSSEEEEEETTSEEE CS
        WD40   5 rtltGH.ssvtslafspdgawlasGsdDgtvr 35 
                 + l GH s+v+++a+ pd ++lasG+d g+v 
  KOO21222.1 243 KRLVGHtSPVSCVAWAPDDDLLASGDDGGKVV 274
                 5688**999**************999666665 PP

>> ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.8   0.0    0.0011       4.1      50      89 ..      30      67 ..       8      69 .. 0.84
   2 !   23.6   0.0   1.3e-08   4.6e-05      35      85 ..     111     160 ..      93     167 .. 0.86
   3 !   12.1   0.0   5.1e-05      0.18      30      90 ..     195     258 ..     178     259 .. 0.80
   4 !   12.1   0.0   5.2e-05      0.19      37      66 ..     248     277 ..     244     293 .. 0.88

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 0.0011
  ANAPC4_WD40 50 gklLavaysdgevrlldaesgkvvhslsvksekavtclgW 89
                 ++l a + +d ++ l d e g+ v++l+v++e  v+ l +
   KOO21222.1 30 EHLAASGGKDAAIVLWDHERGEAVRKLKVAHE--VMALAY 67
                 67788999*********************998..888776 PP

  == domain 2  score: 23.6 bits;  conditional E-value: 1.3e-08
  ANAPC4_WD40  35 dkedsevrsLaWkpdgklLavaysdgevrlldaesgkvvhslsvksekavt 85 
                  +++ ++v++++  pdg+ L v+ +dg+vr+l++ +gk v s++++  + v+
   KOO21222.1 111 PQPRGHVSCVHCAPDGNALLVGAADGSVRMLSSRDGKEVFSFKTGMGD-VN 160
                  5677899***********************************998774.55 PP

  == domain 3  score: 12.1 bits;  conditional E-value: 5.1e-05
  ANAPC4_WD40  30 wtleedkedsevr..sLaWkpd.gklLavaysdgevrlldaesgkvvhslsvksekavtclgWg 90 
                   + +e+ e+++v+  s aW +   + L  + +d +vrl d+  ++   +  v++++ v+c+ W+
   KOO21222.1 195 LEHDEPLEGKNVNgvSAAWAHHsHSTLLTGADDATVRLWDVRRAQPALKRLVGHTSPVSCVAWA 258
                  4556666777777334478665156899***********************************6 PP

  == domain 4  score: 12.1 bits;  conditional E-value: 5.2e-05
  ANAPC4_WD40  37 edsevrsLaWkpdgklLavaysdgevrlld 66 
                  + s v+++aW pd+ lLa + + g+v l+ 
   KOO21222.1 248 HTSPVSCVAWAPDDDLLASGDDGGKVVLYG 277
                  5789**********************9985 PP

>> PALB2_WD40  Partner and localizer of BRCA2 WD40 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   0.3   5.6e-07     0.002     265     348 ..      57     139 ..      18     142 .. 0.86
   2 !    4.0   0.1    0.0053        19     302     350 ..     228     276 ..     200     277 .. 0.83

  Alignments for each domain:
  == domain 1  score: 17.1 bits;  conditional E-value: 5.6e-07
  PALB2_WD40 265 ktarsvevllytlPeGqtGr.yleGdvkdqlaaavltsGaiavWdlllghctalllpesdesWslvrWsgtdsqllaGqkdGsvl 348
                 k a+ v  l+y l +  +Gr y   d   +++ a +  G +  Wd   g+c a ++p+   + s v+ +     ll G +dGsv 
  KOO21222.1  57 KVAHEVMALAYGLGAS-AGRlYAAVDCPTAASGAAIGHGQLNAWDTEAGQC-AYVVPQPRGHVSCVHCAPDGNALLVGAADGSVR 139
                 4445555556666554.56658899999999999*****************.999****************************96 PP

  == domain 2  score: 4.0 bits;  conditional E-value: 0.0053
  PALB2_WD40 302 GaiavWdlllghctalllpesdesWslvrWsgtdsqllaGqkdGsvlvy 350
                  ++ +Wd+ +++ +   l    +  s v W+  d  l +G   G+v++y
  KOO21222.1 228 ATVRLWDVRRAQPALKRLVGHTSPVSCVAWAPDDDLLASGDDGGKVVLY 276
                 5899******999777777788889*******99999999999999999 PP

>> PQQ_2  PQQ-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   0.3   9.1e-07    0.0032      25     140 ..      71     186 ..      38     283 .. 0.65

  Alignments for each domain:
  == domain 1  score: 17.1 bits;  conditional E-value: 9.1e-07
       PQQ_2  25 lgggvsravlsggtlfvat..gggrlvaldaatGkvlWettlegpvvga..plvaegrvvvvasdgqlialdaedGkrlWstqqrseepaelrssaspa 119
                  ++g+  a ++  t +++   g g+l a+d++ G+    +  +   v+      +++ ++v a+dg+++ l+++dGk+++s ++++  +++     s +
  KOO21222.1  71 ASAGRLYAAVDCPTAASGAaiGHGQLNAWDTEAGQCAYVVPQPRGHVSCvhCAPDGNALLVGAADGSVRMLSSRDGKEVFS-FKTGMGDVN---LVSLS 165
                 333333333344444444255999999*******999999885554444456999999999********************.666634444...22333 PP

       PQQ_2 120 vagdtvvvgessgklvaldpk 140
                  +  +v +++  +++++ld++
  KOO21222.1 166 CGETYVQAAGDESRVYILDVR 186
                 334444444447777777766 PP

>> PQQ  PQQ enzyme repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.1       2.5   9.1e+03       6      14 ..      70      78 ..      68      78 .. 0.78
   2 ?   10.6   0.0   0.00012      0.42       4      35 ..     130     161 ..     127     164 .. 0.88
   3 ?   -2.1   0.0       1.2   4.4e+03       9      17 ..     177     185 ..     171     186 .. 0.77

  Alignments for each domain:
  == domain 1  score: -3.1 bits;  conditional E-value: 2.5
                EETTSEEEE CS
         PQQ  6 gsadGylyA 14
                g   G+lyA
  KOO21222.1 70 GASAGRLYA 78
                56789**99 PP

  == domain 2  score: 10.6 bits;  conditional E-value: 0.00012
                 EEEETTSEEEEEETTTCCEEEEEESSSCGSSE CS
         PQQ   4 ylgsadGylyAlDadTGkvlWrfktggpvlsl 35 
                  +g adG ++ l  ++Gk++ +fktg  +++l
  KOO21222.1 130 LVGAADGSVRMLSSRDGKEVFSFKTGMGDVNL 161
                 67899*********************999875 PP

  == domain 3  score: -2.1 bits;  conditional E-value: 1.2
                 TSEEEEEET CS
         PQQ   9 dGylyAlDa 17 
                   ++y lD+
  KOO21222.1 177 ESRVYILDV 185
                 5699***98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (315 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       370  (0.020637); expected 358.6 (0.02)
Passed bias filter:                      317  (0.0176809); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.47u 0.23s 00:00:00.70 Elapsed: 00:00:00.39
# Mc/sec: 2400.18
//
Query:       KOO21223.1  [L=1204]
Description: hypothetical protein Ctob_000814, partial [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    9.9e-09   35.7   0.1      2e-06   28.4   0.0    2.9  2  WD40      WD domain, G-beta repeat
      7e-07   29.5   0.7    4.2e-06   26.9   0.7    2.3  1  TPR_12    Tetratricopeptide repeat
    9.7e-05   22.2   2.8     0.0098   15.9   0.2    2.8  2  TPR_2     Tetratricopeptide repeat
    0.00011   22.0   0.0     0.0012   18.7   0.0    2.6  3  TPR_7     Tetratricopeptide repeat
    0.00017   21.3   1.6      0.014   15.2   0.2    2.6  2  TPR_1     Tetratricopeptide repeat
  ------ inclusion threshold ------
      0.011   15.8   0.1      0.039   14.2   0.1    1.9  1  TPR_8     Tetratricopeptide repeat
      0.077   13.3   0.0       0.28   11.5   0.0    2.0  1  FinO_N    Fertility inhibition protein N terminal
        2.3    9.3   0.0        2.3    9.3   0.0    4.4  4  TPR_14    Tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> WD40  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.2   0.0      0.04        91       5      21 ..    1033    1047 ..    1029    1058 .. 0.74
   2 !   28.4   0.0   8.9e-10     2e-06       8      38 .]    1089    1120 ..    1082    1120 .. 0.88

  Alignments for each domain:
  == domain 1  score: 4.2 bits;  conditional E-value: 0.04
                  EEEESSSSEEEEEEETT CS
        WD40    5 rtltGHssvtslafspd 21  
                  ++ tGH  vt++afsp 
  KOO21223.1 1033 TKPTGH--VTDIAFSPA 1047
                  4578**..*****9995 PP

  == domain 2  score: 28.4 bits;  conditional E-value: 8.9e-10
                  ESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40    8 tGH.ssvtslafspdgawlasGsdDgtvriWd 38  
                   +H s v++++fs +g  l+++s+D+tvr+Wd
  KOO21223.1 1089 AAHnSTVCCVRFSASGERLLTASYDRTVRVWD 1120
                  589555*************************9 PP

>> TPR_12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.9   0.7   1.9e-09   4.2e-06      14      76 ..     100     166 ..      99     167 .. 0.86

  Alignments for each domain:
  == domain 1  score: 26.9 bits;  conditional E-value: 1.9e-09
      TPR_12  14 rrlgrydeAlellekaleiarrl.lGpdh...pltattlrnLgrlyralgryeeAlelleealaiae 76 
                 +++g+++eAl  ++ +l++a+++   +d+   +++ + l+n++ +++ lg+++ A  ++e+al+++e
  KOO21223.1 100 FHQGNFEEALHGFQYCLAVAEKTtGSGDSskiAEYGAMLHNIASCLHCLGDFATAKTYYERALQAFE 166
                 79******************999666666334445568*************************9876 PP

>> TPR_2  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.5   0.2    0.0099        22      12      30 ..     100     118 ..      95     121 .. 0.86
   2 !   15.9   0.2   4.4e-06    0.0098       4      30 ..     138     164 ..     136     167 .. 0.92

  Alignments for each domain:
  == domain 1  score: 5.5 bits;  conditional E-value: 0.0099
       TPR_2  12 yklgdyeeAleafekAlel 30 
                 +++g++eeAl+ f+ +l+ 
  KOO21223.1 100 FHQGNFEEALHGFQYCLAV 118
                 79*********99999876 PP

  == domain 2  score: 15.9 bits;  conditional E-value: 4.4e-06
       TPR_2   4 lynlGlayyklgdyeeAleafekAlel 30 
                 l+n++ ++  lgd++ A+ ++e+Al+ 
  KOO21223.1 138 LHNIASCLHCLGDFATAKTYYERALQA 164
                 789**********************96 PP

>> TPR_7  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.0       1.5   3.4e+03      11      27 ..     101     117 ..      99     124 .. 0.73
   2 !   18.7   0.0   5.2e-07    0.0012       2      29 ..     138     166 ..     138     172 .. 0.90
   3 ?   -3.3   0.0         6   1.3e+04       3      11 ..     567     575 ..     567     577 .. 0.86

  Alignments for each domain:
  == domain 1  score: -1.5 bits;  conditional E-value: 1.5
       TPR_7  11 rlGdyeeAielyeqsLa 27 
                  +G++eeA+  ++ +La
  KOO21223.1 101 HQGNFEEALHGFQYCLA 117
                 58******866666555 PP

  == domain 2  score: 18.7 bits;  conditional E-value: 5.2e-07
       TPR_7   2 LlnLarlysrlGdyeeAielyeqsL.alt 29 
                 L+n+a++ + lGd+++A ++ye++L a++
  KOO21223.1 138 LHNIASCLHCLGDFATAKTYYERALqAFE 166
                 89*********************997765 PP

  == domain 3  score: -3.3 bits;  conditional E-value: 6
       TPR_7   3 lnLarlysr 11 
                 ++++rlysr
  KOO21223.1 567 NAIGRLYSR 575
                 689****98 PP

>> TPR_1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.5   0.1     0.015        33      12      30 ..     100     118 ..      99     121 .. 0.85
   2 !   15.2   0.2   6.1e-06     0.014       4      29 ..     138     163 ..     136     166 .. 0.94

  Alignments for each domain:
  == domain 1  score: 4.5 bits;  conditional E-value: 0.015
                 HHTT-HHHHHHHHHHHHHH CS
       TPR_1  12 fklgkydeAleyyekALel 30 
                 f++g+++eAl  ++ +L +
  KOO21223.1 100 FHQGNFEEALHGFQYCLAV 118
                 78********999988876 PP

  == domain 2  score: 15.2 bits;  conditional E-value: 6.1e-06
                 HHHHHHHHHHTT-HHHHHHHHHHHHH CS
       TPR_1   4 lynlGnayfklgkydeAleyyekALe 29 
                 l n++ +++ lg++  A  yye+AL+
  KOO21223.1 138 LHNIASCLHCLGDFATAKTYYERALQ 163
                 679**********************8 PP

>> TPR_8  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   0.1   1.7e-05     0.039       3      29 ..     137     163 ..     135     166 .. 0.93

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 1.7e-05
                 HHHHHHHHHHHTT-HHHHHHHHHHHHH CS
       TPR_8   3 ayynlgsiylklgdyeeAkeyyekale 29 
                 +++n++s+++ lgd+  Ak yye+al+
  KOO21223.1 137 MLHNIASCLHCLGDFATAKTYYERALQ 163
                 689**********************97 PP

>> FinO_N  Fertility inhibition protein N terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   0.00013      0.28      32      51 ..     504     523 ..     501     529 .. 0.93

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.00013
      FinO_N  32 tPPkWkvkkekLaekakreA 51 
                 tPP+++vkk++La + kreA
  KOO21223.1 504 TPPEFRVKKKRLAPRHKREA 523
                 9******************9 PP

>> TPR_14  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3   0.0     0.001       2.3       9      35 ..     143     169 ..     137     177 .. 0.83
   2 ?   -2.1   0.1       4.5     1e+04       6      34 ..     441     470 ..     438     473 .. 0.70
   3 ?   -2.2   0.1       4.8   1.1e+04      17      37 ..     565     586 ..     553     591 .. 0.67
   4 ?   -0.8   0.4       1.7   3.9e+03      10      24 ..     647     661 ..     642     671 .. 0.81

  Alignments for each domain:
  == domain 1  score: 9.3 bits;  conditional E-value: 0.001
      TPR_14   9 eallalGdpdeAiallrralalaPdda 35 
                 + l  lGd+++A ++++ral+++ +++
  KOO21223.1 143 SCLHCLGDFATAKTYYERALQAFEGPP 169
                 556779***************997765 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 4.5
      TPR_14   6 alaeallalG.dpdeAiallrralalaPdd 34 
                 al+++l+a   + +++ + l+r+ + +P+ 
  KOO21223.1 441 ALGHLLYAGKaRIRAMQEQLDRIADVHPSA 470
                 677777765425666677999999888875 PP

  == domain 3  score: -2.2 bits;  conditional E-value: 4.8
      TPR_14  17 pdeAia.llrralalaPddaea 37 
                 p+ Ai  l+ r+l+l+ + +++
  KOO21223.1 565 PENAIGrLYSRVLSLHKERERL 586
                 5556665999999999887766 PP

  == domain 4  score: -0.8 bits;  conditional E-value: 1.7
      TPR_14  10 allalGdpdeAiall 24 
                 al +l + d+Ai++l
  KOO21223.1 647 ALTRLAQIDAAINAL 661
                 678888888888887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1204 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       556  (0.0310112); expected 358.6 (0.02)
Passed bias filter:                      285  (0.015896); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.72u 0.24s 00:00:00.96 Elapsed: 00:00:00.39
# Mc/sec: 9204.51
//
Query:       KOO21224.1  [L=713]
Description: upf0470 protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    2.7e-77  260.0   0.0    7.7e-77  258.5   0.0    1.8  2  DUF4471      Domain of unknown function (DUF4471)
    7.1e-21   74.2   0.0    1.3e-20   73.4   0.0    1.4  1  DUF4470      Domain of unknown function (DUF4470)
    4.3e-13   48.8   0.1      1e-12   47.5   0.1    1.7  1  YL1_C        YL1 nuclear protein C-terminal domain
  ------ inclusion threshold ------
       0.34   11.8   3.7        5.4    7.9   1.7    2.9  3  ANAPC_CDC26  Anaphase-promoting complex APC subunit CDC26


Domain annotation for each model (and alignments):
>> DUF4471  Domain of unknown function (DUF4471)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  258.5   0.0   1.7e-80   7.7e-77       1     304 [.     149     477 ..     149     480 .. 0.89
   2 ?   -2.4   0.2      0.49   2.2e+03     175     202 ..     644     669 ..     630     708 .. 0.41

  Alignments for each domain:
  == domain 1  score: 258.5 bits;  conditional E-value: 1.7e-80
     DUF4471   1 ldlseLKfkeRDeLedifkfWrrkekkefdiekawdqrlRqhlgeRYDsrknvfDWDlsmklkekgasvihkqeYrrWRetGvAFevreseyqepNrtl 99 
                 +d+++LK+keRD+L +++++W+++   efd+ +++d+rlR ++g RYD+r+nv DWD++m+l +  as++hk ++r+WR tGv Fevr+s+y+ pNrt+
  KOO21224.1 149 FDVNALKSKERDALLEVLRSWAESV--EFDVVRLRDERLRTFYGARYDARRNVLDWDYTMELVPM-ASIVHKIHFREWRLTGVCFEVRDSDYKAPNRTM 244
                 799**********************..**************************************.********************************* PP

     DUF4471 100 asgrvakkkgekvavrgywGDivtgPyisfGietedeellktsngqhvktatdvserNvlellqeletreeyklkkkksersdkveeekk......... 189
                 as +++++kg +v+ rg+wGD+++gP+ + G+++ede+l+k+  +qh k++ d++ +Nvl++l  le+++++ lk+++ e  +   +  +         
  KOO21224.1 245 ASFALGRQKGLTVEKRGFWGDVANGPWAAVGVTCEDERLTKKRSDQHFKSSCDIAYHNVLNWLSALESGTPFALKQEDIEAFEYGGSVADgglakgflg 343
                 **************************************************************************999998877776666577899**** PP

     DUF4471 190 ...................ekkeeeeekeeeeeakdeeeek..............eseleelekvkvkflplesleklkekkkyknlFdiifvsasmvh 255
                                    e        e ++ea                     ++++ +l+ +k+ +l+ + ++++ +k ++kn+F+++++s+  + 
  KOO21224.1 344 ggakgtlpavveevapeptE--------EARKEA------AaeelrakevrakvaAARMSKLPPFKLRLLSGQFVDTM-RKPRHKNMFEVVTLSTHLAY 427
                 **999998776544322111........111111......01123345567788799999***********6666655.59****************** PP

     DUF4471 256 llkpelfq.lladdavlivEtakylvdlkkeqlkefeekvkelakeaglk 304
                 +l ++  + +l+++a+++vEt+k+l +++ e +++++ k  ++a++ g++
  KOO21224.1 428 VLGSDRLNmILRPKATVLVETVKFLCEVRSELRRNYAAKQGQFADRLGWT 477
                 ***987777************************************99986 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 0.49
     DUF4471 175 kkksersdkveeekkekkeeeeekeeee 202
                 k+++er++k++ e+ ++ + + ++  ++
  KOO21224.1 644 KEERERQAKIDAEQAAQAQAAATA--KD 669
                 222222222222222111111111..11 PP

>> DUF4470  Domain of unknown function (DUF4470)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   73.4   0.0   2.8e-24   1.3e-20       1      98 []       9     119 ..       9     119 .. 0.90

  Alignments for each domain:
  == domain 1  score: 73.4 bits;  conditional E-value: 2.8e-24
     DUF4470   1 lwGntpaldllqllk..........edeendlniLllgsgDlRhvlktiasl.....kpssksrklditlndneaeivaRnlllLslllepddslglee 84 
                 +wG++ a dl+ + +          +++ ++l+ L+++ gD+Rhvl+tia +     ++ +  r  ++ ++++e+e++aR++llL+++l+   +l+ +e
  KOO21224.1   9 FWGFSAAADLFAEKPanvsasdddgDSGAQPLRALCIAPGDVRHVLQTIAMEarrakESGKPARAAEFSVYEREPETLARHMLLLAIALD--FELPRRE 105
                 7************88999887766555666**********************9998744568899************************8..77899** PP

     DUF4470  85 aaellleiwyslll 98 
                 +ae+lle+w ++l+
  KOO21224.1 106 RAEVLLEVWANTLV 119
                 ***********985 PP

>> YL1_C  YL1 nuclear protein C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.5   0.1   2.3e-16     1e-12       1      28 [.     607     634 ..     607     635 .. 0.96

  Alignments for each domain:
  == domain 1  score: 47.5 bits;  conditional E-value: 2.3e-16
       YL1_C   1 yCdITGlpAkYrDPkTgLpYanveaykv 28 
                 +C+ITG pAkYrDP +gLpYa++ a+k+
  KOO21224.1 607 LCAITGAPAKYRDPISGLPYADLAAFKE 634
                 6**************************8 PP

>> ANAPC_CDC26  Anaphase-promoting complex APC subunit CDC26
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.3   0.0     0.068     3e+02      10      20 ..     317     327 ..     314     387 .. 0.90
   2 ?   -3.3   0.0       3.8   1.7e+04      61      65 ..     503     507 ..     460     528 .. 0.61
   3 ?    7.9   1.7    0.0012       5.4      15      54 ..     628     674 ..     624     689 .. 0.70

  Alignments for each domain:
  == domain 1  score: 2.3 bits;  conditional E-value: 0.068
  ANAPC_CDC26  10 tLtseDiaeye 20 
                   L++eDi+++e
   KOO21224.1 317 ALKQEDIEAFE 327
                  69*******98 PP

  == domain 2  score: -3.3 bits;  conditional E-value: 3.8
  ANAPC_CDC26  61 ndelk 65 
                  ++ ++
   KOO21224.1 503 ANAER 507
                  33333 PP

  == domain 3  score: 7.9 bits;  conditional E-value: 0.0012
  ANAPC_CDC26  15 Diaeyede.......rqrqkeqaaqqqrsqasastsqasdtdaddft 54 
                  D+a++ +        +++++e++a+ +++qa++++ +a+++da +++
   KOO21224.1 628 DLAAFKELrklypdvKKEERERQAKIDAEQAAQAQAAATAKDAEASD 674
                  88888888888888888888888888888888777777766655444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (713 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       827  (0.0461264); expected 358.6 (0.02)
Passed bias filter:                      419  (0.02337); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.63u 0.26s 00:00:00.89 Elapsed: 00:00:00.41
# Mc/sec: 5255.11
//
Query:       KOO21225.1  [L=689]
Description: hypothetical protein Ctob_000811, partial [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.7e-08   33.4   0.0    2.2e-07   30.4   0.0    2.2  1  ART             NAD:arginine ADP-ribosyltransferase
    4.6e-08   32.7   0.0    8.8e-08   31.7   0.0    1.4  1  ADPrib_exo_Tox  ADP-ribosyltransferase exoenzyme
  ------ inclusion threshold ------
       0.23   11.2   0.3        7.7    6.4   0.0    2.6  2  FluMu_N         Mu-like prophage FluMu N-terminal domain


Domain annotation for each model (and alignments):
>> ART  NAD:arginine ADP-ribosyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.4   0.0   3.8e-11   2.2e-07      63     207 ..     255     423 ..     212     432 .. 0.66

  Alignments for each domain:
  == domain 1  score: 30.4 bits;  conditional E-value: 3.8e-11
         ART  63 dehgiAllaYtssselyrelneavreaGrsreeylsn...............fdfkalhfyLtraLqlLrkdsqrcsqvyRgvk..glrfsrakkgk.s 143
                  e+ +A  +Yt+   l+ + n+ +r +  s ++yl+                + + +    + +a+ +L+k   r+ +vyRgv   gl  +++k+++  
  KOO21225.1 255 PEEVVAARLYTGP--LFVKYNAVLR-GIDSSNKYLEGemkkycaereggtkiNMYCTTLHCINSAIIKLSK-LTRATAVYRGVSdkGLPEQFFKANDcG 349
                 4555666666665..5555555555.3444444432211111111122222256777777899********.99*********9886555555555425 PP

         ART 144 vR...fgqFtssslkkkvae....efgqdtllsiktcl...gvpIkefskfpsedevLIppfevFkvtnlskee 207
                 vR    g+F+s+  +++va          +ll+i   +   g++I ++s++p+e+evL  p++  +v  ++ e+
  KOO21225.1 350 VRggvEGAFMSTTENREVALgyatGKKGSILLEIDQGMiarGADISSISQYPHEKEVLFNPLTGLEVKSTRVEG 423
                 99444579**********986644444568999987543339*********************99998866554 PP

>> ADPrib_exo_Tox  ADP-ribosyltransferase exoenzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.7   0.0   1.5e-11   8.8e-08       6     171 ..     242     418 ..     238     429 .. 0.79

  Alignments for each domain:
  == domain 1  score: 31.7 bits;  conditional E-value: 1.5e-11
                     HHHHHHHHH.TS-HHHHHHHHHHCCTTHHHHHHHHHCTTTSGGGS-SCHHHHH................HHHHHHHCCT-.B-SS-EEEEEEE-G CS
  ADPrib_exo_Tox   6 akkykklke.kltssekeaireYtgsgysdINnyLrqnkgerndldkselekk................iknldsaleks.ripeniivYRrvde 82 
                     ++k k+lk+ +l ++e+ a r Ytg    + N  Lr  + + n+ ++ e++k                  + ++sa+ k  +++    vYR+v+ 
      KOO21225.1 242 NQKLKELKQdELVPEEVVAARLYTGPLFVKYNAVLRGID-SSNKYLEGEMKKYcaereggtkinmycttLHCINSAIIKLsKLTRATAVYRGVSD 335
                     5666766642689999*******************9888.66667768998889999**********9999******9999***********966 PP

                     GGG-HHHHTT-HHHHHHHHHHHTT-EEEESS-EEEESSSS.SCCCTTT...SEEEEEEE-TTSBEEE-CCCSSSGCG-EEEE-TTEEEEEEE CS
  ADPrib_exo_Tox  83 aelgleldskneekvsefeakvkgkvfkergyvSTslvkdtaasfggr...eilleltvpkgsegayisplslypgeaEvLlprgltykink 171
                     + l         e++ + +     +   e +++ST+ ++++a +++     +ille+       ga+is++s+yp e+EvL++  + +++++
      KOO21225.1 336 KGL--------PEQFFKAN-DCGVRGGVEGAFMSTTENREVALGYATGkkgSILLEIDQGMIARGADISSISQYPHEKEVLFNPLTGLEVKS 418
                     655........33333333.3445567799**********8887766553455555555555789******************877777754 PP

>> FluMu_N  Mu-like prophage FluMu N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.4   0.0    0.0013       7.7       9      17 ..     583     591 ..     579     597 .. 0.83
   2 ?    1.8   0.1     0.034     2e+02       8      17 ..     657     666 ..     654     668 .. 0.87

  Alignments for each domain:
  == domain 1  score: 6.4 bits;  conditional E-value: 0.0013
                 S----SSS- CS
     FluMu_N   9 dGYRRAGfa 17 
                 dGY+R+G +
  KOO21225.1 583 DGYCRCGNI 591
                 9******65 PP

  == domain 2  score: 1.8 bits;  conditional E-value: 0.034
                 -S----SSS- CS
     FluMu_N   8 hdGYRRAGfa 17 
                  dG +R+Gf+
  KOO21225.1 657 ADGVCRCGFI 666
                 59******95 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (689 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       618  (0.0344693); expected 358.6 (0.02)
Passed bias filter:                      447  (0.0249317); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.60u 0.27s 00:00:00.87 Elapsed: 00:00:00.44
# Mc/sec: 4724.75
//
Query:       KOO21226.1  [L=465]
Description: mitochondrial inner membrane protease subunit 1, partial [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    8.3e-06   25.6   0.0    2.7e-05   24.0   0.0    1.8  2  Peptidase_S26  Signal peptidase, peptidase S26
  ------ inclusion threshold ------
        1.7    9.2   7.4        3.8    8.0   7.4    1.6  1  DUF3391        Domain of unknown function (DUF3391)


Domain annotation for each model (and alignments):
>> Peptidase_S26  Signal peptidase, peptidase S26
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.0      0.65   5.8e+03      62      88 ..      74      95 ..      67      98 .. 0.63
   2 !   24.0   0.0     3e-09   2.7e-05      91     132 ..     420     461 ..     405     464 .. 0.85

  Alignments for each domain:
  == domain 1  score: -3.0 bits;  conditional E-value: 0.65
  Peptidase_S26 62 qevcvadgavtidgvavsealerDrkg 88
                    +v      ++i+++ ++e+ + D+ g
     KOO21226.1 74 STVA-----MAINAYVIGELVKLDKAG 95
                   4443.....456777777777777776 PP

  == domain 2  score: 24.0 bits;  conditional E-value: 3e-09
  Peptidase_S26  91 lpslqgcrvlaegelfllskevadSfDsRYfGpvpassvigv 132
                    +p+  ++ +++ g+ fl +++ +dS DsRY+Gpvp + + g 
     KOO21226.1 420 MPTDYNGIIVPRGHCFLQGDNERDSTDSRYYGPVPLALIRGI 461
                    5555567889*************************9888775 PP

>> DUF3391  Domain of unknown function (DUF3391)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.0   7.4   0.00042       3.8      43     103 ..     229     308 ..     217     326 .. 0.46

  Alignments for each domain:
  == domain 1  score: 8.0 bits;  conditional E-value: 0.00042
     DUF3391  43 LrasgiqeVwidtdksdeeelagldvpaaeaaeeakaaeesaeleeekqerperleaere.....................e 103
                 Lr++g   V++++ + d++  +++ +++a+aa+eakaa+e + +++e+q++++ ++++++                     +
  KOO21226.1 229 LRSHGADAVVTNVIV-DVMAGEDEAAAEAQAAAEAKAAAEAK-AAAEAQATQALQRVREAkaaqeaadkaaadrveanrlfA 308
                 777777777777777.44444444333333333333222222.222222222222222223334444444444444444443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (465 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1696  (0.0945953); expected 358.6 (0.02)
Passed bias filter:                      770  (0.0429472); expected 358.6 (0.02)
Passed Vit filter:                       105  (0.00585643); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.66u 0.29s 00:00:00.95 Elapsed: 00:00:00.44
# Mc/sec: 3152.40
//
Query:       KOO21227.1  [L=275]
Description: hypothetical protein Ctob_000799 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
  ------ inclusion threshold ------
       0.12   12.3   0.2        8.6    6.3   0.1    2.6  2  YdaS_antitoxin  Putative antitoxin of bacterial toxin-antitox


Domain annotation for each model (and alignments):
>> YdaS_antitoxin  Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.3   0.1   0.00048       8.6      12      26 ..     215     229 ..     202     236 .. 0.78
   2 ?    3.5   0.0    0.0037        66      12      24 ..     236     248 ..     230     250 .. 0.87

  Alignments for each domain:
  == domain 1  score: 6.3 bits;  conditional E-value: 0.00048
  YdaS_antitoxin  12 kaLAealgvsqqaVs 26 
                       LA++lgv++q+ +
      KOO21227.1 215 MSLARELGVTPQNAW 229
                     57**********755 PP

  == domain 2  score: 3.5 bits;  conditional E-value: 0.0037
  YdaS_antitoxin  12 kaLAealgvsqqa 24 
                     ++LA+ lgv+++a
      KOO21227.1 236 ARLAKDLGVTPSA 248
                     68********986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (275 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       544  (0.0303419); expected 358.6 (0.02)
Passed bias filter:                      237  (0.0132188); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.23s 00:00:00.66 Elapsed: 00:00:00.40
# Mc/sec: 2042.90
//
Query:       KOO21228.1  [L=126]
Description: hypothetical protein Ctob_000808 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.6e-10   40.2   1.6    0.00028   20.7   0.0    3.6  4  LRR_6     Leucine Rich repeat
    0.00068   20.0   0.0     0.0049   17.3   0.0    2.1  2  LRR_4     Leucine Rich repeats (2 copies)
     0.0072   16.1   0.0      0.044   13.5   0.0    2.2  1  LRR_8     Leucine rich repeat


Domain annotation for each model (and alignments):
>> LRR_6  Leucine Rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.1       1.1   6.8e+03      15      24 .]       6      15 ..       2      15 .. 0.76
   2 !    9.0   0.1   0.00026       1.6       7      24 .]      27      44 ..      25      44 .. 0.89
   3 !   20.7   0.0   4.7e-08   0.00028       1      24 []      49      72 ..      49      72 .. 0.95
   4 !    7.8   0.0   0.00062       3.7       2      23 ..      79     100 ..      78     100 .. 0.90

  Alignments for each domain:
  == domain 1  score: -2.3 bits;  conditional E-value: 1.1
       LRR_6 15 IgDeGaeaLa 24
                + D+ a a+a
  KOO21228.1  6 LKDADAAAIA 15
                7888898987 PP

  == domain 2  score: 9.0 bits;  conditional E-value: 0.00026
       LRR_6  7 eLdLsgNdIgDeGaeaLa 24
                +L L++Nd+gD+ ae +a
  KOO21228.1 27 KLTLADNDLGDAAAEVIA 44
                588*********999887 PP

  == domain 3  score: 20.7 bits;  conditional E-value: 4.7e-08
       LRR_6  1 snthLteLdLsgNdIgDeGaeaLa 24
                +n ++t+L+L  N+IgD G++aLa
  KOO21228.1 49 TNKSITYLSLHKNKIGDRGGKALA 72
                5999*******************8 PP

  == domain 4  score: 7.8 bits;  conditional E-value: 0.00062
       LRR_6   2 nthLteLdLsgNdIgDeGaeaL 23 
                 +++Lt+L ++gN ++ e  +a+
  KOO21228.1  79 CPSLTTLFVTGNPLSAEARSAI 100
                 89*************9988776 PP

>> LRR_4  Leucine Rich repeats (2 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.2   0.1   0.00057       3.4       6      38 ..      28      65 ..      27      67 .. 0.68
   2 !   17.3   0.0   8.2e-07    0.0049       2      36 ..      52      92 ..      51      97 .. 0.83

  Alignments for each domain:
  == domain 1  score: 8.2 bits;  conditional E-value: 0.00057
                EE--SS---E-S-..HH...H.-TT--EEE-.-S----- CS
       LRR_4  6 LdLsnNqltdipl..le...k.lpnLkeLdLsgNnlitd 38
                L L++N l d     ++   k +++ ++L+L+ N +i+d
  KOO21228.1 28 LTLADNDLGDAAAevIAeqlKtNKSITYLSLHKN-KIGD 65
                7788888888666651145544999999999666.7754 PP

  == domain 2  score: 17.3 bits;  conditional E-value: 8.2e-07
                S--EEE--SS---E-S-..HH.....H-TT--EEE-.-S--- CS
       LRR_4  2 nLevLdLsnNqltdipl..le.....klpnLkeLdLsgNnli 36
                + ++L+L+ N++ d ++  l+     ++p+L++L ++gN ++
  KOO21228.1 52 SITYLSLHKNKIGDRGGkaLAqalaeGCPSLTTLFVTGN-PL 92
                789***********9999944566668*********999.43 PP

>> LRR_8  Leucine rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.5   0.0   7.4e-06     0.044      18      61 .]      44      92 ..      25      92 .. 0.75

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 7.4e-06
                TTSSTT-TT--EEE--SS--.....-GGGGGGGTT--S-.EEE--SS-- CS
       LRR_8 18 deaFkglsnLkvLdLsnNll.....ttlspgafsgLpsLrsLdLsgNrL 61
                 e+ k++++ ++L+L  N++     + l +   +g+psL+ L ++gN+L
  KOO21228.1 44 AEQLKTNKSITYLSLHKNKIgdrggKALAQALAEGCPSLTTLFVTGNPL 92
                5678899*************444444455555679************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (126 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       484  (0.0269954); expected 358.6 (0.02)
Passed bias filter:                      417  (0.0232584); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.38u 0.27s 00:00:00.65 Elapsed: 00:00:00.41
# Mc/sec: 919.27
//
Query:       KOO21229.1  [L=340]
Description: plastidic triose-phosphate phosphate translocator [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   1.1e-100  336.7  14.9   1.3e-100  336.5  14.9    1.0  1  TPT       Triose-phosphate Transporter family
    9.6e-09   35.5  30.3    0.00011   22.4   9.5    2.5  2  EamA      EamA-like transporter family
    7.1e-06   25.4  10.3    7.1e-06   25.4  10.3    1.6  2  UAA       UAA transporter family
  ------ inclusion threshold ------
        2.5    7.9  19.6       0.21   11.4   2.1    3.3  3  Imp-YgjV  Bacterial inner membrane protein


Domain annotation for each model (and alignments):
>> TPT  Triose-phosphate Transporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  336.5  14.9  2.9e-104  1.3e-100       3     290 .]      41     333 ..      39     333 .. 0.95

  Alignments for each domain:
  == domain 1  score: 336.5 bits;  conditional E-value: 2.9e-104
         TPT   3 lgllfllWYllnvvfnilnKkilnvfpyPltvsavqllvgsvlilvlwalglkkrpkisseflkailplalvktlghvlavvslskvaVSfthtvKase 101
                 +g++f+lWY++n+ +ni+nKk+ln++p+P+t++a+ql+vg+ ++++lwa+gl+k+pk+s++ +k+++p++l ++ +h+ avvsl++ aVSfth++Kase
  KOO21229.1  41 TGIFFTLWYIFNIGYNIYNKKALNALPLPYTMAALQLFVGIPYCALLWATGLRKAPKLSVDNVKTLIPVSLGHLGTHIGAVVSLGAGAVSFTHIIKASE 139
                 789************************************************************************************************ PP

         TPT 102 PiFtvilsrlllgeklsllvylsLlpivgGvalasvtElsFnligfisAlisnltfslrnifsKkllkk..lkdldalnlfaiitilslllllPvallv 198
                 P+ ++ils lllg + s + yl+Llp+vgGvalas++ElsF+++gfi+A+ snl+++lr+i++Kk++ +    ++d+ nl+a++til+++ +lP++l++
  KOO21229.1 140 PVVSAILSFLLLGAVSSWQTYLTLLPVVGGVALASLKELSFTWVGFIAAMGSNLSSALRGILAKKTMGGgvGENMDEANLYAVLTILAFIAILPISLAI 238
                 ********************************************************************985555************************* PP

         TPT 199 eg.vlktpsllkst.k.vslkevllllllsgvlfhlynqvaymvLervspvthsvantvKrvvvIvlsvlvfknpvsllnaiGtavaivGvflYs 290
                 e+ +  +  ++k+t +  + + +++++ll+g +++lyn+va+ +L rv+pvth+v+ntvKrvv+Iv+sv+ fk+p+s++ +iG+++aivG++lYs
  KOO21229.1 239 ESpAAISACIAKATaSgLTPTYLWTQSLLAGAFYYLYNEVAFLALGRVNPVTHAVGNTVKRVVIIVASVIAFKTPISTQGIIGSTIAIVGTLLYS 333
                 **75555555555522366889999*********************************************************************8 PP

>> EamA  EamA-like transporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.4   9.5   2.5e-08   0.00011      17     136 ..      55     174 ..      40     175 .. 0.81
   2 !   18.9  12.7   2.9e-07    0.0013       3     136 ..     184     333 ..     182     334 .. 0.84

  Alignments for each domain:
  == domain 1  score: 22.4 bits;  conditional E-value: 2.5e-08
        EamA  17 yfvlskillrkvs.pltltfvrfliagillliiallkegkl.aklslkdwllllllgl..lgtvlafllffyalkktsasnaslitslePvftlilsvl 111
                 y ++ k++l+ ++ p+t++++++ + gi  +++++ ++ ++ +kls+ +++ l+ ++l  lgt ++    + +l  + +s+  +i + ePv+++ils+l
  KOO21229.1  55 YNIYNKKALNALPlPYTMAALQL-FVGIPYCALLWATGLRKaPKLSVDNVKTLIPVSLghLGTHIG---AVVSLGAGAVSFTHIIKASEPVVSAILSFL 149
                 55777888888853889999997.677777788888888887788988888887766422666666...6889999*********************** PP

        EamA 112 llgekltlkqllgivlillGvllil 136
                 llg   ++ ++l ++ ++ Gv+l +
  KOO21229.1 150 LLGAVSSWQTYLTLLPVVGGVALAS 174
                 **********************976 PP

  == domain 2  score: 18.9 bits;  conditional E-value: 2.9e-07
        EamA   3 gillallaalfwaiyfvlskil.....lrkvspltltfvrfliagillliiallkegkl...........aklslkdwlll.lllgllgtvlafllffy 84 
                 g + a+ + l++a+ ++l+k++      ++++   l +v +++a+i+ l+i+l  e++            + l+++ +l+   ll+     l++ + f 
  KOO21229.1 184 GFIAAMGSNLSSALRGILAKKTmgggvGENMDEANLYAVLTILAFIAILPISLAIESPAaisaciakataSGLTPT-YLWTqSLLAGAFYYLYNEVAFL 281
                 789999*************9987887788889999999*************8888888877776644333444444.444447777777888888999* PP

        EamA  85 alkktsasnaslitslePvftlilsvlllgekltlkqllgivlillGvllil 136
                 al ++++ + ++ +++  v++++ sv+ ++ +++   ++g  ++++G+ll +
  KOO21229.1 282 ALGRVNPVTHAVGNTVKRVVIIVASVIAFKTPISTQGIIGSTIAIVGTLLYS 333
                 ************************************************9975 PP

>> UAA  UAA transporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.0      0.56   2.5e+03      68      93 ..      48      72 ..      44      75 .. 0.81
   2 !   25.4  10.3   1.6e-09   7.1e-06      93     301 ..     133     335 ..     113     336 .. 0.82

  Alignments for each domain:
  == domain 1  score: -2.6 bits;  conditional E-value: 0.56
         UAA 68 lvalffitsvlnnealkydisvPvhi 93
                  +++++ ++ n++al+  +++P  +
  KOO21229.1 48 WYIFNIGYNIYNKKALNA-LPLPYTM 72
                567899999999***999.9998765 PP

  == domain 2  score: 25.4 bits;  conditional E-value: 1.6e-09
         UAA  93 iifrssklipvmilGililgkrYsllqylsvllltlGviiftllsakdkkedskeslnkfllGiallvlallldavlglvqeklyk.kygkhskealfy 190
                  i+++s  +   il+ l+lg   s++ yl++l ++ Gv +++l           ++l+++ +G++  +++ l +a+ g++  k++    g++ +ea +y
  KOO21229.1 133 HIIKASEPVVSAILSFLLLGAVSSWQTYLTLLPVVGGVALASL-----------KELSFTWVGFIAAMGSNLSSALRGILAKKTMGgGVGENMDEANLY 220
                 4789***************************************...........3478899***********************972578888888887 PP

         UAA 191 s..hllslplfl..llqgellsavkflsesedvallslpsklfylllnvltqyvcikgV.lilisefgaltvtlvltlRKfvslllSillFknpltlqh 284
                    ++l+++ +l   l+ e   a+ ++ ++++++    p+ l+   l++ + y   + V ++   +++  t ++  t+ ++v ++ S++ Fk p++ q 
  KOO21229.1 221 AvlTILAFIAILpiSLAIESPAAISACIAKATAS-GLTPTYLWTQSLLAGAFYYLYNEVaFLALGRVNPVTHAVGNTVKRVVIIVASVIAFKTPISTQG 318
                 6124566666666544555566778888888777.56677766666655555555555516667899******************************** PP

         UAA 285 lvgtllVflglllysyv 301
                 ++g+ + ++g+llys +
  KOO21229.1 319 IIGSTIAIVGTLLYSIS 335
                 **************875 PP

>> Imp-YgjV  Bacterial inner membrane protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   2.1   4.6e-05      0.21      36     100 ..     106     170 ..      73     176 .. 0.86
   2 ?    4.2   3.4    0.0079        35      39     128 ..     178     276 ..     170     297 .. 0.74
   3 ?    2.2   0.9     0.033   1.5e+02      77     107 ..     300     330 ..     282     339 .. 0.72

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 4.6e-05
    Imp-YgjV  36 lfalhfalLgaytaalsnllsavRtllslktrkkkvmllfilltlvlglltwqglisllpiaasl 100
                 l+ +++  Lg   +a+++l + + +++ + + ++ v+  ++++ l+ ++ +wq+++ llp+++ +
  KOO21229.1 106 LIPVSLGHLGTHIGAVVSLGAGAVSFTHIIKASEPVVSAILSFLLLGAVSSWQTYLTLLPVVGGV 170
                 555677889****************************************************9965 PP

  == domain 2  score: 4.2 bits;  conditional E-value: 0.0079
    Imp-YgjV  39 lhfalLgaytaalsnllsavRtllslktrk........kkvmllfilltlvlglltwqglisllpiaasllatialfslngikmRll.flvssllWlvy 128
                 l+f   g ++a+ snl sa+R +l+ kt +        +   + ++++  ++++l ++  i+  +++++++a  ++  l++  +    +l++++ +l +
  KOO21229.1 178 LSFTWVGFIAAMGSNLSSALRGILAKKTMGggvgenmdEANLYAVLTILAFIAILPISLAIESPAAISACIAKATASGLTPTYLWTQsLLAGAFYYLYN 276
                 688899999********************9999999753333444444444888888888888888888888888887777777444144444444444 PP

  == domain 3  score: 2.2 bits;  conditional E-value: 0.033
    Imp-YgjV  77 lltlvlglltwqglisllpiaasllatialf 107
                 ++++v++++ ++++is   i++s++a ++ +
  KOO21229.1 300 VVIIVASVIAFKTPISTQGIIGSTIAIVGTL 330
                 4556677777788888888888888777655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (340 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       516  (0.0287802); expected 358.6 (0.02)
Passed bias filter:                      211  (0.0117686); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.50u 0.25s 00:00:00.75 Elapsed: 00:00:00.43
# Mc/sec: 2376.02
//
Query:       KOO21230.1  [L=1234]
Description: hypothetical protein Ctob_000802 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
      1e-36  126.5   0.1    4.5e-20   71.6   0.0    2.2  2  AMP-binding    AMP-binding enzyme
    2.4e-09   38.0   0.1    3.3e-08   34.4   0.0    2.6  2  AMP-binding_C  AMP-binding enzyme C-terminal domain
    2.4e-08   33.4   4.1     0.0039   16.9   0.0    5.2  7  Hexapep        Bacterial transferase hexapeptide (six repeats
    4.6e-06   26.9   0.0    9.8e-06   25.8   0.0    1.6  1  PP-binding     Phosphopantetheine attachment site
  ------ inclusion threshold ------
      0.036   13.8   9.9        1.2    8.9   0.1    4.5  4  Hexapep_2      Hexapeptide repeat of succinyl-transferase
      0.097   11.5   0.0       0.14   11.0   0.0    1.1  1  GH3            GH3 auxin-responsive promoter


Domain annotation for each model (and alignments):
>> AMP-binding  AMP-binding enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   71.6   0.0   1.5e-23   4.5e-20       8     239 ..      49     290 ..      45     296 .. 0.78
   2 !   53.5   0.2   4.8e-18   1.4e-14     334     422 ..     292     382 ..     287     383 .. 0.88

  Alignments for each domain:
  == domain 1  score: 71.6 bits;  conditional E-value: 1.5e-23
                  STTSEEEEECCSTEEEEHHHHHHHHHHHHHHHHHTTSSTT-EEEEEESSSHHHHHHHHHHHHTT-EEEEEETTS-HHHHHHHHHHHTESEEEETCTCC CS
  AMP-binding   8 tpdkvalvdsgegqtlTYreldervnrlAagLrslGvkkgdrVaillpnspewvvallailkaGavvvplnptltaeelayiledseakvliatvdse 105
                  + d++a++  +    +T +el++ + +  ++L +  v+++drVa+l p +p++vval+ + +  a+++pl+ ++t +el   l++++a+v+i   +++
   KOO21230.1  49 QTDRPAIYVAKNCPAITHAELHNFAASGLSVLDEYQVGPDDRVALLFPDGPQMVVALISV-MCRATAIPLSIASTDDELVGDLRSVRATVVI-GFQDK 144
                  568888855667889*******************************************87.689****************************.44444 PP

                  CHHHHHHHHSCC-EECEEEEESCCS-HCCHCCCHCCCCSCTTS......................-TSCCCS-BTTSEEEEEEE--SSSS-EEEEEEH CS
  AMP-binding 106 lleklleaaakleavklvivldadellkeeelkeeeeseekae......................kpeeeeelkpddlayiiYTSGTTGkPKGVmlsh 181
                  l  +ll ++    +  ++++ +a++++ +++++  +      +                      +p  +++l+ +d+a+++ TSGTTG+ K V +  
   KOO21230.1 145 LRGELLTQRV--AHELSILLFEAGPAQGTSRSPPLAA-----TlfslrcyfdaqrgsrttggsspRP-SPRWLTREDTAVLLQTSGTTGQKKLVPHLL 234
                  4444444332..3333344444433333322222222.....1344556677778888888888545.7789************************** PP

                  HHHHHHHHHHHHHHCSCCTTT-EEEESS-TTSCHHHHHHHHHHHHTT-EEEE-TTCGC CS
  AMP-binding 182 rnlvanvaslkletrfklkeddvvlsilplahifglilelllallsGatvvllpkdaa 239
                  + +va +  ++      l+++d ++s +pl+h+ g+  ++ +++lsG++v  l ++a+
   KOO21230.1 235 EDVVAGALCIA--ASVPLGAEDLCVSQMPLHHVGGILRSVVAPILSGGAVAHLGGFAP 290
                  *****988864..33457789****************************998877766 PP

  == domain 2  score: 53.5 bits;  conditional E-value: 4.8e-18
                  TSTTS-BEE-TTEEEEEE-TTTSCBEETTSEEEEEEEETTS-SEBTT.-HHHHHHHEEE..T.CCEEEEEEEEEEETTSEEEEEEECCCEEEE CS
  AMP-binding 334 kklgsvGkplpgvevkivDeetgepvpdgeeGellvrgpgvmkgYlk.kpeataeafds..e.grwlrTGDlgrldedGyleivgRkkdlikl 422
                  +++ s G p+ g  + i   + ge +p+ge+G + vrg  +++gY    p+  +++     + ++w++TGD g+ld+dGyl+++gR+k++ik+
   KOO21230.1 292 PSPDSSGIPI-GPAMQIQGAA-GEALPHGEVGAIAVRGCPLFRGYMTwTPDGGESVRGVgiGdNGWFQTGDNGYLDADGYLFVTGRAKETIKR 382
                  4677888886.7799999998.*************************999999998876663456**************************97 PP

>> AMP-binding_C  AMP-binding enzyme C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.3   0.0      0.48   1.4e+03      11      29 ..     132     150 ..     125     156 .. 0.85
   2 !   34.4   0.0   1.1e-11   3.3e-08       1      76 []     391     467 ..     391     467 .. 0.86

  Alignments for each domain:
  == domain 1  score: 0.3 bits;  conditional E-value: 0.48
                    TEEEEEEE-----TTS--- CS
  AMP-binding_C  11 aVaeaaVvGvpdevkGeal 29 
                     V+  +V+G +d+++Ge l
     KOO21230.1 132 SVRATVVIGFQDKLRGELL 150
                    688999**********976 PP

  == domain 2  score: 34.4 bits;  conditional E-value: 1.1e-11
                    HHHHHHHSSTTEEEEEEE-----TTS---EEEEEE---.---HHHHHHHHHHHHT-TTTS-SEEEE-S---B-TTS- CS
  AMP-binding_C   1 evEsalvshpaVaeaaVvGvpdevkGealvafVvlkdg.sealeeeLkahvrkelgpyavpkkvvfvdelpktrsGK 76 
                    e+E +lv+hp+Va++a++ +p+++  e++ ++Vv k+g ++++  eL++++  +l p +  + +v  ++lp+  sGK
     KOO21230.1 391 EIEDVLVTHPKVAQCAAFSMPHATLQEVVGVCVVTKAGcERPTLSELRQYCSLRLHPSKWLEILVHSSALPMGPSGK 467
                    8**********************888888888888989756799*******99999987777666677888888887 PP

>> Hexapep  Bacterial transferase hexapeptide (six repeats)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.0      0.76   2.3e+03      20      28 ..     779     787 ..     778     789 .. 0.54
   2 !    8.5   0.2   0.00056       1.7      13      34 ..     824     845 ..     821     847 .. 0.83
   3 !   11.1   0.8   8.5e-05      0.25       2      30 ..     831     859 ..     830     861 .. 0.86
   4 ?   -2.7   0.0       1.9   5.8e+03       8      18 ..     975     985 ..     974     989 .. 0.80
   5 ?    0.4   0.0       0.2   6.1e+02      21      33 ..    1072    1084 ..    1071    1086 .. 0.73
   6 !   16.9   0.0   1.3e-06    0.0039       2      32 ..    1096    1126 ..    1095    1127 .. 0.90
   7 ?   -2.8   0.0         2     6e+03       2      11 ..    1176    1185 ..    1173    1187 .. 0.41

  Alignments for each domain:
  == domain 1  score: -1.4 bits;  conditional E-value: 0.76
                 EEE-TTEEE CS
     Hexapep  20 VkIGdnvkI 28 
                 + IG++v I
  KOO21230.1 779 ASIGPDVSI 787
                 455666655 PP

  == domain 2  score: 8.5 bits;  conditional E-value: 0.00056
                 TEEEETTEEE-TTEEEETTEEE CS
     Hexapep  13 faviggnVkIGdnvkIgagvvi 34 
                 ++ ++++V++Gd++++ + + i
  KOO21230.1 824 GTLLMEPVVVGDDCVVCSSTHI 845
                 5668999*********998877 PP

  == domain 3  score: 11.1 bits;  conditional E-value: 8.5e-05
                 EEEETTEEE-TTEEEETTEEE-TTEEEET CS
     Hexapep   2 tvIGsnvlIgpfaviggnVkIGdnvkIga 30 
                 +v+G+++++ + ++i++++++ d+++Ig+
  KOO21230.1 831 VVVGDDCVVCSSTHIAPGAVLPDGTCIGP 859
                 78999999999999999999999999987 PP

  == domain 4  score: -2.7 bits;  conditional E-value: 1.9
                 EEE-TTEEEET CS
     Hexapep   8 vlIgpfavigg 18 
                 +l++pf+++g+
  KOO21230.1 975 ALVRPFVHFGA 985
                 68999999874 PP

  == domain 5  score: 0.4 bits;  conditional E-value: 0.2
                  EE-TTEEEETTEE CS
     Hexapep   21 kIGdnvkIgagvv 33  
                  ++Gd+v+ g+ + 
  KOO21230.1 1072 TVGDDVTFGSRSQ 1084
                  6888888888664 PP

  == domain 6  score: 16.9 bits;  conditional E-value: 1.3e-06
                  EEEETTEEE-TTEEEETTEEE-TTEEEETTE CS
     Hexapep    2 tvIGsnvlIgpfaviggnVkIGdnvkIgagv 32  
                  ++++ ++++   +v++++V++G+n+++g+g+
  KOO21230.1 1096 VTLHAGSMVADRCVVLPGVVLGRNATLGSGS 1126
                  56788999999******************98 PP

  == domain 7  score: -2.8 bits;  conditional E-value: 2
                  EEEETTEEE- CS
     Hexapep    2 tvIGsnvlIg 11  
                  + IG+ ++++
  KOO21230.1 1176 ALIGDSSTLR 1185
                  2344444333 PP

>> PP-binding  Phosphopantetheine attachment site
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.8   0.0   3.3e-09   9.8e-06       9      66 ..     551     607 ..     543     608 .. 0.88

  Alignments for each domain:
  == domain 1  score: 25.8 bits;  conditional E-value: 3.3e-09
  PP-binding   9 evlgvpleeidpdtdlfdlGlDSllavellaaleeefgveiplsdlfehptlaelaay 66 
                  +l++ + + ++d+dl  +G  Sl++ +l ++++e++gv++ + ++f  ++l+++a+ 
  KOO21230.1 551 ALLQLKEAP-GLDDDLLLYGASSLVVGQLCSQINEQYGVRVAVGTVFLKRSLRRIAEE 607
                 567776666.8*******************************************9986 PP

>> Hexapep_2  Hexapeptide repeat of succinyl-transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   1.4       1.8   5.5e+03      12      23 ..     342     353 ..     341     353 .. 0.74
   2 ?    5.8   0.1    0.0038        11      17      27 ..     830     840 ..     824     843 .. 0.86
   3 ?    2.3   0.0     0.049   1.5e+02       3      15 ..    1072    1084 ..    1071    1090 .. 0.88
   4 ?    8.9   0.1   0.00041       1.2      13      30 ..    1107    1126 ..    1096    1127 .. 0.88

  Alignments for each domain:
  == domain 1  score: -2.8 bits;  conditional E-value: 1.8
                 TT-EESEEE-TT CS
   Hexapep_2  12 anagiGvslGdn 23 
                   ++ Gv +Gdn
  KOO21230.1 342 GESVRGVGIGDN 353
                 566669999998 PP

  == domain 2  score: 5.8 bits;  conditional E-value: 0.0038
                 SEEE-TT-EE- CS
   Hexapep_2  17 GvslGdncvvg 27 
                 +v +Gd+cvv+
  KOO21230.1 830 PVVVGDDCVVC 840
                 6999****998 PP

  == domain 3  score: 2.3 bits;  conditional E-value: 0.049
                  EE-TT-EE-TT-E CS
   Hexapep_2    3 iIGdnCliGanag 15  
                  ++Gd++ +G+++ 
  KOO21230.1 1072 TVGDDVTFGSRSQ 1084
                  79********995 PP

  == domain 4  score: 8.9 bits;  conditional E-value: 0.00041
                  T-EE..SEEE-TT-EE-TT- CS
   Hexapep_2   13 nagi..GvslGdncvvgaGv 30  
                  ++++  Gv lG+n+++g+G+
  KOO21230.1 1107 RCVVlpGVVLGRNATLGSGS 1126
                  588889***********996 PP

>> GH3  GH3 auxin-responsive promoter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   4.6e-05      0.14      67      98 ..     205     235 ..     194     305 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 4.6e-05
                 CC.CTSSSS-SEEEEECCEETTEEEEEEESHH CS
         GH3  67 eqnvLtsepiklfalsSGTtsgksKliPvtee 98 
                 +++ Lt+e +  ++++SGTt g++Kl+P   e
  KOO21230.1 205 SPRWLTREDTAVLLQTSGTT-GQKKLVPHLLE 235
                 67789***************.*******8765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1234 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       368  (0.0205254); expected 358.6 (0.02)
Passed bias filter:                      289  (0.0161191); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.76u 0.28s 00:00:01.04 Elapsed: 00:00:00.47
# Mc/sec: 7901.90
//
Query:       KOO21231.1  [L=77]
Description: hypothetical protein Ctob_000803 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      4e-09   36.5   0.2    4.9e-09   36.2   0.2    1.1  1  FeThRed_A  Ferredoxin thioredoxin reductase variable alpha ch


Domain annotation for each model (and alignments):
>> FeThRed_A  Ferredoxin thioredoxin reductase variable alpha chain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.2   0.2   2.7e-13   4.9e-09       2      66 ..       8      70 ..       7      71 .. 0.94

  Alignments for each domain:
  == domain 1  score: 36.2 bits;  conditional E-value: 2.7e-13
                T-EEEE-S--EES--TTSTTS-EE-TT-EEEEEEE-SEETTEE---SS-EEEEE..TTTEEEEE-GG CS
   FeThRed_A  2 GdrVrVkesvkVYhvpkhrkealdlkgmeGevvqivtewkGrkiSanlpvkVqf..ekkfkaHlred 66
                G++VrV ++v+  hvp h+ +++  +g  G v+ +++e    ++S+n  vk+qf  +kk+  H+++ 
  KOO21231.1  8 GQKVRVSKQVTFMHVPGHK-DGFQAQGSVGIVTRVIDE---SNLSPNRKVKIQFeePKKWAGHFESF 70
                99*****************.99**************98...67***********9999*****9865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (77 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       340  (0.0189637); expected 358.6 (0.02)
Passed bias filter:                      294  (0.016398); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.35u 0.27s 00:00:00.62 Elapsed: 00:00:00.42
# Mc/sec: 547.22
//
Query:       KOO21232.1  [L=294]
Description: mitochondrial DNA replication protein yhm2 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    7.3e-20   70.7   7.4    8.2e-11   41.7   0.5    3.6  4  Mito_carr  Mitochondrial carrier protein


Domain annotation for each model (and alignments):
>> Mito_carr  Mitochondrial carrier protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.5   0.5   2.7e-06     0.049      38      91 ..      40      91 ..      31      97 .. 0.71
   2 ?    0.8   0.0     0.027   4.8e+02      24      37 ..      84      97 ..      71     105 .. 0.58
   3 !   41.7   0.5   4.6e-15   8.2e-11       8      94 ..     104     185 ..      97     188 .. 0.92
   4 !   17.7   0.0   1.3e-07    0.0024       3      93 ..     197     285 ..     195     289 .. 0.82

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 2.7e-06
                CSSTTTSCSSHHHHHHHHHHHHHHHGGGTTHHHHHHHHHHHHHHHHH.HHHHHHH CS
   Mito_carr 38 ksskksksaaildvlkkiykeeGlrglyrGllpnllrvapasalkfv.lyetlkr 91
                + +++        + ++++++ G++g+y+G+ p    +  ++++ ++ + +++kr
  KOO21232.1 40 QAGTYPS---YGAAARHMWQQLGIAGFYKGFFPYGALQGLYKGVPVLfTQDVVKR 91
                3333332...557899*****************9999999998876524455555 PP

  == domain 2  score: 0.8 bits;  conditional E-value: 0.027
                HHHHHHHHHHHHCC CS
   Mito_carr 24 tPldvvKtrlqtqk 37
                +  dvvK rl +++
  KOO21232.1 84 FTQDVVKRRLVSSG 97
                33466666666655 PP

  == domain 3  score: 41.7 bits;  conditional E-value: 4.6e-15
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSTTTSCSSHHHHHHHHHHHHHHHGGGTTHHHHHHHHHHHHHHHHHHHHHHHHHHC CS
   Mito_carr   8 ellaGglagavatlvttPldvvKtrlqtqkksskksksaaildvlkkiykeeGlrglyrGllpnllrvapasalkfvlyetlkrlll 94 
                  + aG++ag+v++ +++P+ ++K ++ t+++ ++          + +++k+eG+   ++G +++++r  + ++++f   e + r+l 
  KOO21232.1 104 GVGAGVAAGMVQGAFVAPTQRLKSMIATNPEAGAM-----STGLIAQVIKTEGVQTVFKGTSATVVRRGIDWGMRFYGKELFERVLR 185
                 5779****************************998.....5689**************************************99986 PP

  == domain 4  score: 17.7 bits;  conditional E-value: 1.3e-07
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSTTTSCSSHHHHHHHHHHHHHH.HGGGTTHHHHHHHHHHHHHHHHHHHHHHHHHH CS
   Mito_carr   3 lsvlkellaGglagavatlvttPldvvKtrlqtqkksskksksaaildvlkkiykeeGl.rglyrGllpnllrvapasalkfvlyetlkrll 93 
                 ls++++++aG+++g++  ++ +Pldv    lq ++    + +  +++  l    + +G+ + +yrG+ +++l  +  +a++ +l  ++ ++ 
  KOO21232.1 197 LSAAESFAAGLFGGLC-CSINHPLDVFVANLQKHRVLPLSPG--GVAAELMAEARAKGFfAVFYRGVAMRCLHASYHTAWMAGLGGYISEMW 285
                 6788999999999998.7899****************99955..355556666677777355*****************9999888777765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (294 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       361  (0.020135); expected 358.6 (0.02)
Passed bias filter:                      276  (0.0153941); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.30s 00:00:00.68 Elapsed: 00:00:00.40
# Mc/sec: 2227.19
//
Query:       KOO21233.1  [L=404]
Description: cathepsin d [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.3e-76  258.1   0.0    1.7e-76  257.7   0.0    1.1  1  Asp       Eukaryotic aspartyl protease
    8.7e-09   35.9   0.6    5.6e-07   30.0   0.1    2.7  3  TAXi_N    Xylanase inhibitor N-terminal


Domain annotation for each model (and alignments):
>> Asp  Eukaryotic aspartyl protease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  257.7   0.0   1.9e-80   1.7e-76       1     299 [.      74     383 ..      74     386 .. 0.96

  Alignments for each domain:
  == domain 1  score: 257.7 bits;  conditional E-value: 1.9e-80
                 EEEEEEEETTTTEEEEEEEETT--SEEEEBTTESTSHCHHTSS-B-GGG-TT-EEEEEEEEEECTTSEEEEEEEEEEEEETTEEEEEEEEEEEEEESSH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
         Asp   1 eYfgeisiGtpeqkftvifDTGSsdlWVpsskckkssackshstydpskSstykkngkslsisYGdgsvsGflsqdtvkvggltvknqefgeatkepgs 99 
                 +Y+g+++iGtp q+f+ + DTGSs++W+p ++c     ++++++y+++kSsty+ ng++++i+YG+g+v+G++  d v++ggl+ ++  f+e t+epg 
  KOO21233.1  74 QYYGPLDIGTPAQSFKAVYDTGSSNTWIPGKNCP----VEKRDKYHSEKSSTYHYNGSKFEIQYGSGAVEGVIDADDVSIGGLVATQHLFAETTQEPGL 168
                 7********************************9....789********************************************************** PP

                 HHTTSSSSEEEE-S-GGGSCGGSCCHHHHHHHTTSSSSSEEEEEE-S....TTSSEEEEEESSEEGGGEEEEEEEEEESSTSSTEEEEEEEEETTEEEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
         Asp 100 tflaakfdGiLGlgfkeisveeatpvfdnlvsqglikepvfsvylnr....eeeeggeivfGgvDeskykGsltyvpvtskgywqielesvtvggktvl 194
                 + ++ +fdGiLG g++eisv+++ p f  l++q  ++epvfs+y+ +    + + gge+ +Gg+D+++y+G+l y+pv++kgywqi  +++tvg++tv 
  KOO21233.1 169 SWEVGRFDGILGFGWPEISVNKIPPYFHVLIAQSKVEEPVFSFYFGSttgeKPQVGGELSLGGTDPAHYTGKLEYIPVSKKGYWQIAAGNLTVGKETV- 266
                 **********************************************9887677889*****************************************9. PP

                 EEEEEEEEEETTCSSEEEEHHHHHHHHHHHTTEEEET........TCEEEEETTGGGGSEEEEEEETTEEEEEEGGGGEEEESSSTTSEEEESE....E CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx........xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx....x RF
         Asp 195 cssgcqailDtGTsllalptsivekiakaigakkses........egeyvvdCdslsslpdisftiggakitvpvselvlkeeeseesqCilgl....v 281
                     ++++lDtGTsllalp   + +i++++g  +                  C + ++lp++s+++gg+ +t++ ++l++k ++ +++ C++g+     
  KOO21233.1 267 IGGDFEVVLDTGTSLLALPLREAVEINSKLGCVDIGIecefirpnPDDPSSTCPDPKTLPSLSIELGGKVYTLSGEDLLVKITQAGQTVCLSGImgfpG 365
                 8999***************************988777778888876677889******************************************99887 PP

                 ECCTSSSEEEEHHHHTTE CS
                 xxxxxxxxxxxxxxxxxx RF
         Asp 282 seeegdlwiLGdvFlrsa 299
                 + ++g + iLGdvFl+s+
  KOO21233.1 366 PLPGGLKAILGDVFLKSV 383
                 889999*********985 PP

>> TAXi_N  Xylanase inhibitor N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.0   0.1   6.3e-11   5.6e-07       1      52 [.      75     123 ..      75     130 .. 0.83
   2 !    3.8   0.0    0.0069        62      81     146 ..     129     189 ..     123     231 .. 0.61
   3 ?   -2.9   0.0      0.77   6.9e+03      14      25 ..     271     282 ..     267     285 .. 0.83

  Alignments for each domain:
  == domain 1  score: 30.0 bits;  conditional E-value: 6.3e-11
      TAXi_N   1 YlvsisiGtppqplklvvDtGsdltWvqCkpckacssqkkpvfdpsksstyk 52 
                 Y+  ++iGtp+q++k+v DtGs+ tW+  k+c     +k+  ++ +kssty+
  KOO21233.1  75 YYGPLDIGTPAQSFKAVYDTGSSNTWIPGKNCP---VEKRDKYHSEKSSTYH 123
                 88899************************5554...6666667777777775 PP

  == domain 2  score: 3.8 bits;  conditional E-value: 0.0069
      TAXi_N  81 yeisygadgssssGvlatdtltlsstdgksvkvpnlvfGCgk.snlgglaagadGilGLGrgklSlv 146
                 +ei+yg  g  ++Gv+  d +++    g+ v  ++l    ++   l+    + dGilG+G  ++S+ 
  KOO21233.1 129 FEIQYG-SG-AVEGVIDADDVSI----GGLVATQHLFAETTQePGLSWEVGRFDGILGFGWPEISVN 189
                 678886.44.8999999999999....55555554333333333344444569*******9999864 PP

  == domain 3  score: -2.9 bits;  conditional E-value: 0.77
      TAXi_N  14 lklvvDtGsdlt 25 
                 + +v+DtG +l+
  KOO21233.1 271 FEVVLDTGTSLL 282
                 789*****9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (404 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       275  (0.0153383); expected 358.6 (0.02)
Passed bias filter:                      262  (0.0146132); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.47u 0.24s 00:00:00.71 Elapsed: 00:00:00.40
# Mc/sec: 2994.91
//
Query:       KOO21234.1  [L=312]
Description: hypothetical protein Ctob_000806 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.6e-05   24.3   0.3    4.7e-05   23.5   0.3    1.3  1  COG2      COG (conserved oligomeric Golgi) complex component,


Domain annotation for each model (and alignments):
>> COG2  COG (conserved oligomeric Golgi) complex component, COG2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.5   0.3   2.6e-09   4.7e-05      16     132 ..      20     136 ..      16     137 .. 0.98

  Alignments for each domain:
  == domain 1  score: 23.5 bits;  conditional E-value: 2.6e-09
        COG2  16 dqFvselrhgvpLeslrrdLeaylkllekellelvnedyadFvslSghLvglqeeleevesplaaarkkvesvreklsereeeveskleeakeleekre 114
                 ++Fv ++r+ vpLe+++  L + +k l ++l +    ++    ++  +    +e+l+++   ++  +++  ++  +++ r  e ++ ++e+++l + ++
  KOO21234.1  20 AAFVRSMRETVPLETMKASLSEQEKVLGAALTNTMQANFPALHEVVREVGTAEERLRKLCDAIEVNQSNGAEFAGSVQSRLFEFQAAMDEREALIKRSN 118
                 78************************************************************************************************* PP

        COG2 115 llklllkldevvekleal 132
                  ++ll++l++ v++le+l
  KOO21234.1 119 DVRLLRRLIDAVSNLEHL 136
                 ****************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (312 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       599  (0.0334096); expected 358.6 (0.02)
Passed bias filter:                      466  (0.0259914); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.26s 00:00:00.73 Elapsed: 00:00:00.42
# Mc/sec: 2210.63
//
Query:       KOO21235.1  [L=3516]
Description: small gtp-binding protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.4e-10   39.4  40.9      0.031   14.7   0.2    9.8 11  LRR_4     Leucine Rich repeats (2 copies)
    2.1e-09   37.0  15.2    6.6e-07   29.0   5.2    8.7 10  LRR_8     Leucine rich repeat
    1.2e-06   28.8   0.0    3.1e-06   27.4   0.0    1.7  1  Roc       Ras of Complex, Roc, domain of DAPkinase
    5.9e-05   22.8  51.4      0.039   14.0   0.1   12.5 14  LRR_6     Leucine Rich repeat
  ------ inclusion threshold ------
      0.035   14.4   0.3       0.16   12.3   0.0    2.3  3  AAA_19    AAA domain
      0.052   14.0   0.0        2.1    8.8   0.0    3.2  2  AAA       ATPase family associated with various cellular acti
      0.088   12.3   0.0       0.19   11.2   0.0    1.5  1  Arf       ADP-ribosylation factor family
       0.11   12.1   0.0       0.23   11.0   0.0    1.5  1  Ras       Ras family
       0.37   11.5  22.4         12    6.9   0.0    9.5 11  LRR_1     Leucine Rich Repeat


Domain annotation for each model (and alignments):
>> LRR_4  Leucine Rich repeats (2 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.0       6.5   1.3e+04       1      16 [.    1075    1090 ..    1075    1093 .. 0.87
   2 !    6.7   0.4     0.005        10       2      42 ..    1589    1633 ..    1588    1635 .. 0.67
   3 !    8.3   0.1    0.0016       3.3       2      33 ..    1649    1686 ..    1648    1692 .. 0.83
   4 ?   -0.8   0.0       1.2   2.3e+03      22      39 ..    1781    1794 ..    1774    1799 .. 0.67
   5 !    6.7   0.1     0.005        10       3      36 ..    2011    2039 ..    2011    2042 .. 0.86
   6 ?   -1.5   0.0         2     4e+03       2      18 ..    2053    2069 ..    2052    2096 .. 0.61
   7 !    9.8   0.8   0.00054       1.1      19      41 ..    2149    2170 ..    2122    2173 .. 0.62
   8 ?   -1.6   0.2       2.1   4.1e+03       6      32 ..    2250    2279 ..    2218    2282 .. 0.63
   9 ?   -1.5   0.0       1.9   3.8e+03      21      41 ..    2324    2343 ..    2314    2345 .. 0.72
  10 !   14.7   0.2   1.5e-05     0.031       4      40 ..    2351    2387 ..    2349    2390 .. 0.82
  11 !   14.6   1.7   1.7e-05     0.034       2      39 ..    2395    2432 ..    2394    2436 .. 0.91

  Alignments for each domain:
  == domain 1  score: -3.2 bits;  conditional E-value: 6.5
                  SS--EEE--SS---E- CS
       LRR_4    1 pnLevLdLsnNqltdi 16  
                  ++ +vL L ++q++d+
  KOO21235.1 1075 TRCRVLLLTGTQIKDF 1090
                  5789**********95 PP

  == domain 2  score: 6.7 bits;  conditional E-value: 0.005
                  S--EEE--SS---.E-S-.HH......H-TT--EEE-.-S-----GGGG CS
       LRR_4    2 nLevLdLsnNqlt.dipl.le......klpnLkeLdLsgNnlitdldeL 42  
                  +L++L+L +N +  + +  ++        + L++L+L +N    +l eL
  KOO21235.1 1589 SLQKLNLMHNGVGvKHEDaIGmsrmllTSTALQTLNLGSN----SLGEL 1633
                  7999999999988554446224443334666******778....77666 PP

  == domain 3  score: 8.3 bits;  conditional E-value: 0.0016
                  S--EEE--SS-.....--.E-S-HHH-TT--EEE-.-S CS
       LRR_4    2 nLevLdLsnNq.....lt.diplleklpnLkeLdLsgN 33  
                   L+ Ld snN+     ++     l+ ++ ++eLdLs N
  KOO21235.1 1649 TLTMLDVSNNRllpegIKhVCTALRTCTAMRELDLSYN 1686
                  69********9777776666666889*********999 PP

  == domain 4  score: -0.8 bits;  conditional E-value: 1.2
                  -TT--EEE-.-S-----G CS
       LRR_4   22 lpnLkeLdLsgNnlitdl 39  
                  +  Lk+L++s+     d+
  KOO21235.1 1781 NSTLKTLNISNG----DI 1794
                  566999999543....55 PP

  == domain 5  score: 6.7 bits;  conditional E-value: 0.005
                  --EEE--SS---E-S-HHH-TT--EEE-.-S--- CS
       LRR_4    3 LevLdLsnNqltdiplleklpnLkeLdLsgNnli 36  
                  L++++L++N ltd    + l n  +Ld+++N +i
  KOO21235.1 2011 LKTIHLGSNALTD---MA-LCNISTLDIHDN-QI 2039
                  899**********...44.9********666.87 PP

  == domain 6  score: -1.5 bits;  conditional E-value: 2
                  S--EEE--SS---E-S- CS
       LRR_4    2 nLevLdLsnNqltdipl 18  
                  +L++Ld++ + + d +l
  KOO21235.1 2053 SLTNLDIRKCPIEDEGL 2069
                  68899999888887665 PP

  == domain 7  score: 9.8 bits;  conditional E-value: 0.00054
                  HHH-TT--EEE-.-S-----GGG CS
       LRR_4   19 leklpnLkeLdLsgNnlitdlde 41  
                  l++++ Lk+LdL +Nn+i+++++
  KOO21235.1 2149 LQNNTTLKSLDL-SNNPISTVSN 2170
                  446888999999.5558888765 PP

  == domain 8  score: -1.6 bits;  conditional E-value: 2.1
                  EE--SS---.E-S-.HH..H.-TT--EEE-.- CS
       LRR_4    6 LdLsnNqlt.dipl.le..k.lpnLkeLdLsg 32  
                  L L++N lt + +  +   +   +Lk+Ld+  
  KOO21235.1 2250 LVLHSNELTpT-GAtIVvkQlSRSLKSLDI-T 2279
                  55555555532.223223242334777777.4 PP

  == domain 9  score: -1.5 bits;  conditional E-value: 1.9
                  H-TT--EEE-.-S-----GGG CS
       LRR_4   21 klpnLkeLdLsgNnlitdlde 41  
                  +l  L++L++    +++dl++
  KOO21235.1 2324 QLSALEKLTMDKD-FLRDLTS 2343
                  5999999999555.8888875 PP

  == domain 10  score: 14.7 bits;  conditional E-value: 1.5e-05
                  -EEE--SS---E-S-HHH.-TT--EEE-.-S-----GG CS
       LRR_4    4 evLdLsnNqltdipllek.lpnLkeLdLsgNnlitdld 40  
                  ++ + snN+l+ ip   + +  Lk+L+L+gN +++ l+
  KOO21235.1 2351 KFFSASNNKLSFIPADIQlIRGLKSLTLNGN-QLRELN 2387
                  56789**********7775677******999.777764 PP

  == domain 11  score: 14.6 bits;  conditional E-value: 1.7e-05
                  S--EEE--SS---E-S-.HHH-TT--EEE-.-S-----G CS
       LRR_4    2 nLevLdLsnNqltdipl.leklpnLkeLdLsgNnlitdl 39  
                  n e++dL++Nqlt +p  l+kl  Lk+Ld s+N li++l
  KOO21235.1 2395 NIEKIDLRSNQLTFLPTsLAKLRLLKQLDASEN-LIQTL 2432
                  899**************999**********999.88776 PP

>> LRR_8  Leucine rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.1   0.1      0.39   7.8e+02      49      59 ..    1588    1598 ..    1584    1600 .. 0.72
   2 ?    0.7   5.3      0.22   4.4e+02      24      61 .]    1617    1660 ..    1588    1660 .. 0.57
   3 !    5.3   1.5    0.0082        16       3      59 ..    1620    1686 ..    1618    1687 .. 0.59
   4 ?   -2.9   0.0         3     6e+03      24      34 ..    1781    1791 ..    1776    1798 .. 0.68
   5 ?    0.0   0.1      0.37   7.4e+02      27      60 ..    2011    2038 ..    2007    2039 .. 0.70
   6 !    9.1   0.1   0.00055       1.1      19      42 ..    2147    2170 ..    2142    2175 .. 0.87
   7 ?   -2.0   0.2       1.6   3.1e+03      21      37 ..    2241    2257 ..    2217    2261 .. 0.43
   8 !    8.5   0.9   0.00082       1.6      27      61 .]    2350    2383 ..    2326    2383 .. 0.83
   9 !   29.0   5.2   3.3e-10   6.6e-07       1      61 []    2371    2429 ..    2371    2429 .. 0.97
  10 !   24.6   2.4   8.1e-09   1.6e-05       2      61 .]    2395    2452 ..    2394    2452 .. 0.96

  Alignments for each domain:
  == domain 1  score: -0.1 bits;  conditional E-value: 0.39
                  -S-.EEE--SS CS
       LRR_8   49 psLrsLdLsgN 59  
                  +sL++L+L +N
  KOO21235.1 1588 ESLQKLNLMHN 1598
                  67888888888 PP

  == domain 2  score: 0.7 bits;  conditional E-value: 0.22
                  -TT--EEE--SS---GGGG......GGGTT--S-.EEE--SS-- CS
       LRR_8   24 lsnLkvLdLsnNllttlsp......gafsgLpsLrsLdLsgNrL 61  
                   ++L++L+L++N+l  l +      + +   + L++Ld+s+NrL
  KOO21235.1 1617 STALQTLNLGSNSLGELKQyirtfaRGLGANKTLTMLDVSNNRL 1660
                  46788888888887666422211114555566677777777765 PP

  == domain 3  score: 5.3 bits;  conditional E-value: 0.0082
                  -SEEE-TTS--SEE-TT..S....STT-TT--EEE--SS--.....-GGGGGGGTT--S-.EEE--SS CS
       LRR_8    3 LtsLdLsnNrltsldde..a....FkglsnLkvLdLsnNll.....ttlspgafsgLpsLrsLdLsgN 59  
                  L++L+L +N+l +l++   +       ++ L++Ld snN+l     +++   a++ +++ r+LdLs+N
  KOO21235.1 1620 LQTLNLGSNSLGELKQYirTfargLGANKTLTMLDVSNNRLlpegiKHV-CTALRTCTAMRELDLSYN 1686
                  7888888888888887422311112335778888888885322222455.356667777777777777 PP

  == domain 4  score: -2.9 bits;  conditional E-value: 3
                  -TT--EEE--S CS
       LRR_8   24 lsnLkvLdLsn 34  
                  +s Lk+L++sn
  KOO21235.1 1781 NSTLKTLNISN 1791
                  56677777765 PP

  == domain 5  score: 0.0 bits;  conditional E-value: 0.37
                  --EEE--SS---GGGGGGGTT--S-.EEE--SS- CS
       LRR_8   27 LkvLdLsnNllttlspgafsgLpsLrsLdLsgNr 60  
                  Lk+++L++N lt +       L ++  Ld+ +N+
  KOO21235.1 2011 LKTIHLGSNALTDMA------LCNISTLDIHDNQ 2038
                  788889999888873......4455666666666 PP

  == domain 6  score: 9.1 bits;  conditional E-value: 0.00055
                  TSSTT-TT--EEE--SS---GGGG CS
       LRR_8   19 eaFkglsnLkvLdLsnNllttlsp 42  
                  +a ++++ Lk+LdLsnN ++t+s+
  KOO21235.1 2147 TALQNNTTLKSLDLSNNPISTVSN 2170
                  57889999*************986 PP

  == domain 7  score: -2.0 bits;  conditional E-value: 1.6
                  STT-TT--EEE--SS-- CS
       LRR_8   21 FkglsnLkvLdLsnNll 37  
                   +g++  ++L L +N+l
  KOO21235.1 2241 LRGNTYINELVLHSNEL 2257
                  23344445555555554 PP

  == domain 8  score: 8.5 bits;  conditional E-value: 0.00082
                  --EEE--SS---GGGGGGGTT--S-.EEE--SS-- CS
       LRR_8   27 LkvLdLsnNllttlspgafsgLpsLrsLdLsgNrL 61  
                  +k ++ snN+l+++ p  ++  + L+sL+L+gN+L
  KOO21235.1 2350 MKFFSASNNKLSFI-PADIQLIRGLKSLTLNGNQL 2383
                  5555569*******.9*****************98 PP

  == domain 9  score: 29.0 bits;  conditional E-value: 3.3e-10
                  TT-SEEE-TTS--SEE-TTSSTT-TT--EEE--SS---GGGGGGGTT--S-.EEE--SS-- CS
       LRR_8    1 pnLtsLdLsnNrltslddeaFkglsnLkvLdLsnNllttlspgafsgLpsLrsLdLsgNrL 61  
                  ++L+sL L+ N+l +l++ + + l+n + +dL++N+lt+l p +++ L+ L++Ld s N +
  KOO21235.1 2371 RGLKSLTLNGNQLRELNPAVGE-LENIEKIDLRSNQLTFL-PTSLAKLRLLKQLDASENLI 2429
                  58********************.*****************.9****************986 PP

  == domain 10  score: 24.6 bits;  conditional E-value: 8.1e-09
                  T-SEEE-TTS--SEE-TTSSTT-TT--EEE--SS---GGGGGGGTT--S-.EEE--SS-- CS
       LRR_8    2 nLtsLdLsnNrltslddeaFkglsnLkvLdLsnNllttlspgafsgLpsLrsLdLsgNrL 61  
                  n +++dL++N+lt l+ +  k l+ Lk Ld s+Nl++tl+  ++ +L+++++L L  N+L
  KOO21235.1 2395 NIEKIDLRSNQLTFLPTSLAK-LRLLKQLDASENLIQTLH-PSICDLHAIEKLELKENPL 2452
                  7899*****************.*****************9.79***************87 PP

>> Roc  Ras of Complex, Roc, domain of DAPkinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.4   0.0   1.5e-09   3.1e-06       1      88 [.    2486    2572 ..    2486    2602 .. 0.75

  Alignments for each domain:
  == domain 1  score: 27.4 bits;  conditional E-value: 1.5e-09
                  EEEEESSTTSSHHHHHHCHCT-CC...C-EEETTTTEEEEEEECGGSGGCTTBTTTTCEEEEEEEE-SGGCTTT.T-HHHHCTSCEEEEEEE CS
         Roc    1 KvvlvGdsgvGKtsllkrfvedkf...sekekstigvdfltkevtkikgvendkkvkkvklniWDtaGqerfrs.lhplylreaalailvyd 88  
                  +++l+G +++GKt+l + +  + +   s+++++t  +d+       i g e+ + +k+v l+iWD+aG   f++ l+p+y  ++  ++ v  
  KOO21235.1 2486 RLILLGAERSGKTTLERALRAGIVqppSPNYEPTNDMDINAMV---I-GPES-NPTKQVWLSIWDMAGSVPFDArLAPHYADGSIFVLTVAA 2572
                  589************9999998883335789999999996543...2.4443.44689***************9567777777666665554 PP

>> LRR_6  Leucine Rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.5   0.1     0.011        21       1      16 [.    1586    1601 ..    1586    1603 .. 0.91
   2 ?    0.8   0.2      0.35   6.9e+02       5      16 ..    1620    1631 ..    1616    1631 .. 0.85
   3 !    5.7   0.1    0.0091        18       2      24 .]    1647    1669 ..    1646    1669 .. 0.90
   4 ?    1.2   0.0      0.25     5e+02       2      13 ..    1675    1686 ..    1674    1687 .. 0.84
   5 !    9.1   0.8   0.00076       1.5       1      17 [.    1780    1796 ..    1780    1796 .. 0.96
   6 ?   -1.8   0.1       2.3   4.5e+03       2      12 ..    1857    1867 ..    1856    1868 .. 0.90
   7 ?   -0.1   0.1      0.64   1.3e+03       5      17 ..    2011    2023 ..    2008    2023 .. 0.94
   8 ?    0.8   0.1      0.34   6.7e+02       3      16 ..    2027    2040 ..    2025    2042 .. 0.87
   9 !   14.0   0.1   1.9e-05     0.039       1      20 [.    2050    2069 ..    2050    2073 .. 0.91
  10 !   12.0   1.0   8.7e-05      0.17       1      17 [.    2151    2167 ..    2151    2169 .. 0.92
  11 ?    1.3   0.1      0.23   4.6e+02       2      20 ..    2244    2262 ..    2243    2263 .. 0.93
  12 ?   -1.8   0.1       2.3   4.6e+03       3      11 ..    2271    2279 ..    2270    2280 .. 0.86
  13 ?   -1.4   0.1       1.7   3.4e+03       5      15 ..    2373    2383 ..    2371    2384 .. 0.89
  14 ?   -1.2   0.1       1.5     3e+03       5      16 ..    2396    2407 ..    2394    2407 .. 0.85

  Alignments for each domain:
  == domain 1  score: 5.5 bits;  conditional E-value: 0.011
       LRR_6    1 snthLteLdLsgNdIg 16  
                  +n +L++L+L++N++g
  KOO21235.1 1586 QNESLQKLNLMHNGVG 1601
                  589**********998 PP

  == domain 2  score: 0.8 bits;  conditional E-value: 0.35
       LRR_6    5 LteLdLsgNdIg 16  
                  L++L+L +N +g
  KOO21235.1 1620 LQTLNLGSNSLG 1631
                  99*******886 PP

  == domain 3  score: 5.7 bits;  conditional E-value: 0.0091
       LRR_6    2 nthLteLdLsgNdIgDeGaeaLa 24  
                  n +Lt Ld+s N +  eG++  +
  KOO21235.1 1647 NKTLTMLDVSNNRLLPEGIKHVC 1669
                  99************999998765 PP

  == domain 4  score: 1.2 bits;  conditional E-value: 0.25
       LRR_6    2 nthLteLdLsgN 13  
                  +t ++eLdLs+N
  KOO21235.1 1675 CTAMRELDLSYN 1686
                  56689******9 PP

  == domain 5  score: 9.1 bits;  conditional E-value: 0.00076
       LRR_6    1 snthLteLdLsgNdIgD 17  
                  sn++L++L++s  dIgD
  KOO21235.1 1780 SNSTLKTLNISNGDIGD 1796
                  69**************9 PP

  == domain 6  score: -1.8 bits;  conditional E-value: 2.3
       LRR_6    2 nthLteLdLsg 12  
                  n+++t+L Lsg
  KOO21235.1 1857 NRTITSLTLSG 1867
                  9********97 PP

  == domain 7  score: -0.1 bits;  conditional E-value: 0.64
       LRR_6    5 LteLdLsgNdIgD 17  
                  L++ +L +N ++D
  KOO21235.1 2011 LKTIHLGSNALTD 2023
                  9**********98 PP

  == domain 8  score: 0.8 bits;  conditional E-value: 0.34
       LRR_6    3 thLteLdLsgNdIg 16  
                  +++ +Ld+ +N+Ig
  KOO21235.1 2027 CNISTLDIHDNQIG 2040
                  67889********9 PP

  == domain 9  score: 14.0 bits;  conditional E-value: 1.9e-05
       LRR_6    1 snthLteLdLsgNdIgDeGa 20  
                  +n++Lt Ld++ + I DeG+
  KOO21235.1 2050 YNRSLTNLDIRKCPIEDEGL 2069
                  69*****************8 PP

  == domain 10  score: 12.0 bits;  conditional E-value: 8.7e-05
       LRR_6    1 snthLteLdLsgNdIgD 17  
                  +nt+L++LdLs N I+ 
  KOO21235.1 2151 NNTTLKSLDLSNNPIST 2167
                  7*************986 PP

  == domain 11  score: 1.3 bits;  conditional E-value: 0.23
       LRR_6    2 nthLteLdLsgNdIgDeGa 20  
                  nt++ eL L +N+++  Ga
  KOO21235.1 2244 NTYINELVLHSNELTPTGA 2262
                  999***************8 PP

  == domain 12  score: -1.8 bits;  conditional E-value: 2.3
       LRR_6    3 thLteLdLs 11  
                  ++L++Ld++
  KOO21235.1 2271 RSLKSLDIT 2279
                  89*****97 PP

  == domain 13  score: -1.4 bits;  conditional E-value: 1.7
       LRR_6    5 LteLdLsgNdI 15  
                  L++L L+gN++
  KOO21235.1 2373 LKSLTLNGNQL 2383
                  9********98 PP

  == domain 14  score: -1.2 bits;  conditional E-value: 1.5
       LRR_6    5 LteLdLsgNdIg 16  
                  +++ dL++N+++
  KOO21235.1 2396 IEKIDLRSNQLT 2407
                  6889******96 PP

>> AAA_19  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0     8e-05      0.16       8      36 ..     612     640 ..     606     743 .. 0.88
   2 ?   -3.6   0.0       6.5   1.3e+04      46      79 ..     869     902 ..     860     945 .. 0.72
   3 ?   -4.2   0.0         9   1.8e+04      47      84 ..    2407    2443 ..    2392    2450 .. 0.71

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 8e-05
      AAA_19   8 lkekvllvtaGpGtGKTrvlkhivallve 36 
                 ++ +++lv aGpGtGKT + k++v  l +
  KOO21235.1 612 HSTQPVLVRAGPGTGKTWMAKQAVFTLAD 640
                 67899************999988876665 PP

  == domain 2  score: -3.6 bits;  conditional E-value: 6.5
      AAA_19  46 llvaftgrAakelrerlaalgaeatTiHrlalld 79 
                  +va+t+r a+++  ++++ +++++   ++alld
  KOO21235.1 869 RIVAVTQRMASQMLRSIDQKLKSTDNACKIALLD 902
                 6899999999999988866666554444444444 PP

  == domain 3  score: -4.2 bits;  conditional E-value: 9
      AAA_19   47 lvaftgrAakelrerlaalgaeatTiHrlalldfddll 84  
                     +t+ A  +l ++l+a +  ++T+H   + d++ ++
  KOO21235.1 2407 TFLPTSLAKLRLLKQLDASENLIQTLHPS-ICDLHAIE 2443
                  45588889999999998888889999944.35555554 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.8   0.0     0.001       2.1       2      86 ..     618     755 ..     617     762 .. 0.74
   2 ?    0.8   0.1      0.32   6.3e+02      37      90 ..     873     932 ..     857     955 .. 0.63

  Alignments for each domain:
  == domain 1  score: 8.8 bits;  conditional E-value: 0.001
                 EEESSTTSSHHHHHHHHHHHHTHEEEEEETTTCSSS......................................................STTHHHHHH CS
         AAA   2 llyGppGtGKTllakavakelgvefleisgsellsk......................................................yvgesekki 46 
                 l+   pGtGKT +ak+ + +l  ++l+  g++                                                          y g++++  
  KOO21235.1 618 LVRAGPGTGKTWMAKQAVFTLADRLLRGTGPSDGIRlvpivvfvqriiyllretmdqnkstkggsaaavpaagetppkskslleryiasvYSGKKMEAW 716
                 66677**********999998655444444433322334444444444444455566678888888999999999999999999999999999999998 PP

                 HHHHHHHHHTSTSEEEEEETGGGHHHHHTTCCCHHHHHHH CS
         AAA  47 relfkeakekakpsilfiDEidalaksrsgseseeeervv 86 
                   ++ +a  ++   ++++D +d+ a+ r++ e+ ++++vv
  KOO21235.1 717 CTMLMQAYDMR-ALVVLLDGVDEAAGLRDHVEHFVHKEVV 755
                 88888888887.8999999999999999888888888877 PP

  == domain 2  score: 0.8 bits;  conditional E-value: 0.32
                 SSTTHHHHHHHHHHHHHHHTS.TSEEEEEETGGGHHHHH.....TTCCCHHHHHHHHHHH CS
         AAA  37 kyvgesekkirelfkeakeka.kpsilfiDEidalaksr.....sgseseeeervvnqLl 90 
                  ++  +++ +r + +++k+   +++i ++D id ++k+       ++e + ++rv++ +l
  KOO21235.1 873 VTQRMASQMLRSIDQKLKSTDnACKIALLDRIDTVIKNYpidgeADTEGDLADRVLEDML 932
                 333334444444444444444456888888888888887765444444455555555555 PP

>> Arf  ADP-ribosylation factor family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   9.5e-05      0.19      12      70 ..    2482    2551 ..    2471    2585 .. 0.77

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 9.5e-05
                  TTEEEEEEEESTTSSHHHHHHHHHHSSCEE....CSSSSSEEEEEEEE.......TTEEEEEEEE-SSGG CS
         Arf   12 kkelrilllGLDnaGKtTilkklkleelvt....tvPTigfnveelei.......knlkftvwDvGGqek 70  
                   + +r++llG + +GKtT+   l+ + ++       PT  ++++ + i       k++ +++wD+ G   
  KOO21235.1 2482 AHGARLILLGAERSGKTTLERALRAGIVQPpspnYEPTNDMDINAMVIgpesnptKQVWLSIWDMAGSVP 2551
                  56789*****************9999887544448899999999999899999999*********99765 PP

>> Ras  Ras family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   0.00012      0.23       1      77 [.    2486    2568 ..    2486    2578 .. 0.78

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00012
                  EEEEEESTTSSHHHHHHHHHHSSC...SSSCTTTSSEEEEEEEEEET...TEEEEEEEEEETTSGGGHHHHHHHHTTESEEEE CS
         Ras    1 KlvlvGdsavGKtslllrfvkdkF...keeyesTigvdfytkeievd...gkevkleiwDTAGqeefkslrelyyrdaegill 77  
                  +l+l+G +  GKt+l      +     + +ye+T  +d     i  +    k+v l+iwD AG   f++     y d++ ++l
  KOO21235.1 2486 RLILLGAERSGKTTLERALRAGIVqppSPNYEPTNDMDINAMVIGPEsnpTKQVWLSIWDMAGSVPFDARLAPHYADGSIFVL 2568
                  589************888777665111579****977766666654466799***************9877777777777766 PP

>> LRR_1  Leucine Rich Repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.0   0.1         9   1.8e+04       1      10 [.    1589    1598 ..    1589    1599 .. 0.82
   2 ?    3.6   0.0     0.075   1.5e+02       2      16 ..    1620    1633 ..    1619    1644 .. 0.80
   3 ?    0.0   0.0       1.1   2.2e+03       2      13 ..    1650    1661 ..    1649    1669 .. 0.73
   4 ?    1.7   0.0       0.3     6e+02       3      14 ..    1679    1690 ..    1678    1699 .. 0.84
   5 ?   -1.3   0.0         3     6e+03       2       9 ..    1784    1791 ..    1783    1804 .. 0.83
   6 ?   -4.1   0.0         9   1.8e+04       2      12 ..    2011    2021 ..    2011    2024 .. 0.83
   7 ?    1.5   0.4      0.37   7.4e+02       1      17 [.    2053    2069 ..    2053    2085 .. 0.73
   8 ?    6.9   0.0     0.006        12       2      13 ..    2155    2166 ..    2154    2181 .. 0.84
   9 ?   -2.8   0.1         9   1.8e+04       1       9 [.    2272    2280 ..    2272    2280 .. 0.87
  10 ?    0.8   0.1      0.61   1.2e+03       2      19 ..    2373    2389 ..    2372    2393 .. 0.79
  11 ?    2.6   0.1      0.16   3.2e+02       1      23 []    2395    2416 ..    2395    2416 .. 0.85

  Alignments for each domain:
  == domain 1  score: -4.0 bits;  conditional E-value: 9
       LRR_1    1 nLrhLdLsnn 10  
                  +L++L+L +n
  KOO21235.1 1589 SLQKLNLMHN 1598
                  69****9776 PP

  == domain 2  score: 3.6 bits;  conditional E-value: 0.075
       LRR_1    2 LrhLdLsnnpllglp 16  
                  L++L+L++n+l g +
  KOO21235.1 1620 LQTLNLGSNSL-GEL 1633
                  9*********9.444 PP

  == domain 3  score: 0.0 bits;  conditional E-value: 1.1
       LRR_1    2 LrhLdLsnnpll 13  
                  L+ Ld+snn+ll
  KOO21235.1 1650 LTMLDVSNNRLL 1661
                  788*******83 PP

  == domain 4  score: 1.7 bits;  conditional E-value: 0.3
       LRR_1    3 rhLdLsnnpllg 14  
                  r+LdLs+n++++
  KOO21235.1 1679 RELDLSYNSPGR 1690
                  89*******965 PP

  == domain 5  score: -1.3 bits;  conditional E-value: 3
       LRR_1    2 LrhLdLsn 9   
                  L++L++sn
  KOO21235.1 1784 LKTLNISN 1791
                  9*****98 PP

  == domain 6  score: -4.1 bits;  conditional E-value: 9
       LRR_1    2 LrhLdLsnnpl 12  
                  L++++L++n l
  KOO21235.1 2011 LKTIHLGSNAL 2021
                  89999999976 PP

  == domain 7  score: 1.5 bits;  conditional E-value: 0.37
       LRR_1    1 nLrhLdLsnnpllglpp 17  
                  +L+ Ld++ +p+++ + 
  KOO21235.1 2053 SLTNLDIRKCPIEDEGL 2069
                  5999*******955443 PP

  == domain 8  score: 6.9 bits;  conditional E-value: 0.006
       LRR_1    2 LrhLdLsnnpll 13  
                  L++LdLsnnp++
  KOO21235.1 2155 LKSLDLSNNPIS 2166
                  9*********94 PP

  == domain 9  score: -2.8 bits;  conditional E-value: 9
       LRR_1    1 nLrhLdLsn 9   
                  +L++Ld++n
  KOO21235.1 2272 SLKSLDITN 2280
                  69*****86 PP

  == domain 10  score: 0.8 bits;  conditional E-value: 0.61
       LRR_1    2 LrhLdLsnnpllglppns 19  
                  L++L L++n+l + ++++
  KOO21235.1 2373 LKSLTLNGNQL-RELNPA 2389
                  9*********9.666655 PP

  == domain 11  score: 2.6 bits;  conditional E-value: 0.16
       LRR_1    1 nLrhLdLsnnpllglppnsfqnL 23  
                  n +++dL++n+l  ++p s+ +L
  KOO21235.1 2395 NIEKIDLRSNQL-TFLPTSLAKL 2416
                  7899********.6888888765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (3516 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       709  (0.0395449); expected 358.6 (0.02)
Passed bias filter:                      434  (0.0242066); expected 358.6 (0.02)
Passed Vit filter:                        53  (0.0029561); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 1.47u 0.31s 00:00:01.78 Elapsed: 00:00:00.50
# Mc/sec: 21283.63
//
Query:       KOO21236.1  [L=154]
Description: hypothetical protein Ctob_000804 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.5e-07   28.8  11.0      0.033   14.0   0.3    3.5  3  IQ        IQ calmodulin-binding motif


Domain annotation for each model (and alignments):
>> IQ  IQ calmodulin-binding motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.8   0.2     9e-06      0.16       2      19 ..      72      89 ..      71      91 .. 0.88
   2 !    8.6   1.0   9.6e-05       1.7       2      19 ..      99     116 ..      98     117 .. 0.92
   3 !   14.0   0.3   1.8e-06     0.033       2      18 ..     126     142 ..     125     143 .. 0.93

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 9e-06
                HHHHHHHHHHHHHHHHHH CS
          IQ  2 kaaikIQaawRGylaRkr 19
                +aa+k+Qa  RG + R++
  KOO21236.1 72 EAAVKMQAIARGRVGRQA 89
                69**********999986 PP

  == domain 2  score: 8.6 bits;  conditional E-value: 9.6e-05
                 HHHHHHHHHHHHHHHHHH CS
          IQ   2 kaaikIQaawRGylaRkr 19 
                 +aa+k+ aa RG laR++
  KOO21236.1  99 DAATKLAAARRGQLARRQ 116
                 79***************8 PP

  == domain 3  score: 14.0 bits;  conditional E-value: 1.8e-06
                 HHHHHHHHHHHHHHHHH CS
          IQ   2 kaaikIQaawRGylaRk 18 
                 +aa k+Q+  RG laRk
  KOO21236.1 126 AAAAKLQKMQRGKLARK 142
                 69**************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (154 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1104  (0.0615762); expected 358.6 (0.02)
Passed bias filter:                      307  (0.0171231); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.25s 00:00:00.62 Elapsed: 00:00:00.39
# Mc/sec: 1184.33
//
Query:       KOO21237.1  [L=690]
Description: lipase esterase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.1e-40  138.8   0.1    3.5e-40  138.1   0.1    1.4  1  Abhydrolase_3  alpha/beta hydrolase fold
    1.1e-15   58.2   0.1    1.9e-15   57.5   0.1    1.4  1  KIAA1430       KIAA1430 homologue
    0.00038   19.4   0.0     0.0019   17.1   0.0    1.9  2  Say1_Mug180    Steryl acetyl hydrolase
    0.00068   19.2   3.4       0.98    9.4   0.1    2.9  2  IQ             IQ calmodulin-binding motif
  ------ inclusion threshold ------
      0.013   14.8   0.1       0.25   10.5   0.1    2.3  2  Hydrolase_4    Serine aminopeptidase, S33
       0.13   12.5   0.0       0.57   10.4   0.0    2.1  2  CUT            CUT domain


Domain annotation for each model (and alignments):
>> Abhydrolase_3  alpha/beta hydrolase fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  138.1   0.1   1.2e-43   3.5e-40       1     210 [.     329     540 ..     329     541 .. 0.93

  Alignments for each domain:
  == domain 1  score: 138.1 bits;  conditional E-value: 1.2e-43
                    EEEE--STTTS--TTTTHHHHHHHHHHHTSEEEEEE---TTTS-TTHHHHHHHHHHHHHHHTHHHHTETTCEEEEEEETHHHHHHHHHHHHHHHTT CS
  Abhydrolase_3   1 lvyfHGGGfvlgsldthdalcrelakelgavvvsvdYrlAPehpfPaavedalaalrwlaeqawelgadpsrivlaGdSaGGnlaaavalrardeg 96 
                    lv +HGG fv+gs++  ++l+++l++ +ga v  +  rlAPehp+Paa++d  aa+  l +     g+ p++++l+ +S GG la+a++ r+ ++ 
     KOO21237.1 329 LVLVHGGMFVTGSPRAGRHLAAKLSELVGAPVATPTLRLAPEHPYPAALDDLSAAYAALGSMPLCGGVPPKQLALFAESSGGALALAMLSRQTSSR 424
                    6889**********************************************************88999*********************97776665 PP

                    .---EEEEEEESE-SSTSSTTSHHHHHCHHTTTSSSSCHHHHHHHHHHHSS..GGGGGSTTTSGGGC.S.-SST---EEEEEETT-TTHHHHHHHH CS
  Abhydrolase_3  97 .epkvagqvliyPvtdlertesesikkaeeladgplltraaldlfwrlylp..eadrddplasplla.e.dlsglpptlvvvaefDplrdegeaya 187
                      +++a++vl +P++dl + +++s+   +++a++p+++r++l  + r+yl+  + +++dp++sp+++ + +l glpptlv+v+  ++l d++ ++ 
     KOO21237.1 425 kLMEPAAIVLASPWLDL-TCSGQSY--VANEARDPVMQRKRLLGISRAYLGetGISASDPAVSPVHGsSpSLLGLPPTLVQVGLSEVLVDDSYELE 517
                    2667*************.9999999..3445777****************64788999*********6346************************* PP

                    HHHHHTT--EEEEEETTEETTGG CS
  Abhydrolase_3 188 erlraagvevelieyegmvHgfa 210
                    +  + ag +v+++ ++g+ H+++
     KOO21237.1 518 NLAKGAGADVRVQLWDGVLHAWH 540
                    *********************98 PP

>> KIAA1430  KIAA1430 homologue
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.5   0.1   6.4e-19   1.9e-15       1     102 []      20     156 ..      20     156 .. 0.87

  Alignments for each domain:
  == domain 1  score: 57.5 bits;  conditional E-value: 6.4e-19
    KIAA1430   1 Hlnklknikssidnk...........apkkpshlskkkkklqleeerlkeiereNqiLleklseimrrkgk........................kksa 64 
                 Hl++l ++ +++d++           +   ++h + ++k+ q++ er++eie+eN  Llekls+i rr+++                          sa
  KOO21237.1  20 HLRNLYEMSPQVDTRwgglrngvreqKQPMYNHVRANLKRAQIQDERFAEIEQENTVLLEKLSKILRRSRNptvgtrdwtggirltpnmvpvidhWISA 118
                 889999999995555555555554334446888************************************778888899999999999999999998889 PP

    KIAA1430  65 ssqsqksktaskslnaenrkkelqkIeeENqkllkRlq 102
                 +++ +  ++++ sln + r++e  +Ie EN++l  Rlq
  KOO21237.1 119 ETTAFGAAMEPTSLNLSLRRNERLRIEVENRALVARLQ 156
                 9999********************************97 PP

>> Say1_Mug180  Steryl acetyl hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   0.0      0.15   4.5e+02     119     134 ..     323     338 ..     317     343 .. 0.84
   2 !   17.1   0.0   6.5e-07    0.0019     195     241 ..     399     445 ..     368     474 .. 0.85

  Alignments for each domain:
  == domain 1  score: -0.6 bits;  conditional E-value: 0.15
  Say1_Mug180 119 PkvDpvllylHGGgfa 134
                  P v  +l+ +HGG+f+
   KOO21237.1 323 PIVPTLLVLVHGGMFV 338
                  777789********97 PP

  == domain 2  score: 17.1 bits;  conditional E-value: 6.5e-07
  Say1_Mug180 195 knvvvlGdSaGGnlvLslllklsklnkvvlPkkaiaiSPWlnltild 241
                  k++ ++ +S+GG l L +l +     k + P  +++ SPWl+lt   
   KOO21237.1 399 KQLALFAESSGGALALAMLSRQTSSRKLMEPAAIVLASPWLDLTCSG 445
                  778999***************9999******************9544 PP

>> IQ  IQ calmodulin-binding motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.2   0.9   0.00038       1.1       2      19 ..     612     629 ..     611     630 .. 0.92
   2 !    9.4   0.1   0.00033      0.98       2      18 ..     657     673 ..     656     675 .. 0.91

  Alignments for each domain:
  == domain 1  score: 9.2 bits;  conditional E-value: 0.00038
                 HHHHHHHHHHHHHHHHHH CS
          IQ   2 kaaikIQaawRGylaRkr 19 
                 +aa+k+Qa  RG  aRk 
  KOO21237.1 612 QAALKLQALTRGRAARKS 629
                 69**************95 PP

  == domain 2  score: 9.4 bits;  conditional E-value: 0.00033
                 HHHHHHHHHHHHHHHHH CS
          IQ   2 kaaikIQaawRGylaRk 18 
                 +aa++ Qa  RG +aR 
  KOO21237.1 657 AAAVRVQALTRGRKARN 673
                 79**************6 PP

>> Hydrolase_4  Serine aminopeptidase, S33
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.1   8.5e-05      0.25      74     114 ..     397     442 ..     373     465 .. 0.81
   2 ?    1.3   0.0     0.057   1.7e+02     193     234 ..     498     539 ..     488     541 .. 0.88

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 8.5e-05
  Hydrolase_4  74 pelplfllGhSmGGliallyllrypd.....kvaglilsaPalkik 114
                  p ++l l+++S GG++al++l r+ +     + a+++l++P+l++ 
   KOO21237.1 397 PPKQLALFAESSGGALALAMLSRQTSsrklmEPAAIVLASPWLDLT 442
                  556899***************55555567767789******99876 PP

  == domain 2  score: 1.3 bits;  conditional E-value: 0.057
  Hydrolase_4 193 PllllhGeaDkvvdpeas.relyerlgskdktlklypglyHel 234
                  P+l+  G ++ +vd +   ++l++ +g+ d++++l +g  H  
   KOO21237.1 498 PTLVQVGLSEVLVDDSYElENLAKGAGA-DVRVQLWDGVLHAW 539
                  89************99997777787875.************76 PP

>> CUT  CUT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.0   0.00019      0.57       7      48 ..      46      89 ..      40     100 .. 0.81
   2 ?   -2.0   0.0       1.4   4.2e+03      37      66 ..     502     532 ..     488     532 .. 0.82

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00019
         CUT  7 tkdiaqkvkeeLkrasisqavFAekvlnrs..qgtlselLrkPk 48
                 + ++++v+  Lkra+i+ + FAe   + +     ls++Lr+ +
  KOO21237.1 46 KQPMYNHVRANLKRAQIQDERFAEIEQENTvlLEKLSKILRRSR 89
                56789*******************99999944456999999655 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 1.4
         CUT  37 qgtlselLr.kPkpwenlkagrevyirmqnw 66 
                 q  lse+L  +   +enl +g  + +r q w
  KOO21237.1 502 QVGLSEVLVdDSYELENLAKGAGADVRVQLW 532
                 7789999996677799999998888888877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (690 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       406  (0.0226449); expected 358.6 (0.02)
Passed bias filter:                      297  (0.0165653); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.61u 0.26s 00:00:00.87 Elapsed: 00:00:00.43
# Mc/sec: 4783.90
//
Query:       KOO21238.1  [L=536]
Description: snf1-related protein kinase catalytic subunit alpha kin10 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    6.9e-77  258.4   0.0    9.1e-77  258.0   0.0    1.1  1  Pkinase          Protein kinase domain
      1e-42  146.2   0.0    1.4e-42  145.7   0.0    1.1  1  Pkinase_Tyr      Protein tyrosine kinase
    3.7e-08   33.0   0.0    6.9e-08   32.1   0.0    1.4  1  Kinase-like      Kinase-like
    1.7e-07   30.9   1.6    1.7e-07   30.9   0.1    1.8  2  KA1              Kinase associated domain 1
    2.2e-07   31.4   0.0    7.8e-07   29.6   0.0    2.0  1  AdenylateSensor  Adenylate sensor of SNF1-like protein kinase
    1.9e-05   24.6   0.4    4.4e-05   23.5   0.4    1.6  1  UBA_2            Ubiquitin associated domain (UBA)
     0.0041   17.1   0.1      0.093   12.6   0.1    2.3  2  APH              Phosphotransferase enzyme family
     0.0042   15.2   3.7     0.0057   14.8   3.7    1.1  1  Totivirus_coat   Totivirus coat protein
     0.0098   15.5   0.2      0.018   14.6   0.2    1.4  1  RIO1             RIO1 family


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  258.0   0.0   4.6e-80   9.1e-77       1     264 []      13     265 ..      13     265 .. 0.94

  Alignments for each domain:
  == domain 1  score: 258.0 bits;  conditional E-value: 4.6e-80
                 EEEEEEEEEESSEEEEEEEETTTTEEEEEEEEECHCHCHHHH.HHHHHHHHHHHHHSCTTB--EEEEEEESSEEEEEEE--TTEBHHHHHHHHSS--HH CS
     Pkinase   1 yekleklGeGsfGkVykaveketgkivAvKkikkekakkkke.kkvlrEikilkklkhpnivrlyevfeekdelylvleyveggeladllerkgslsee 98 
                 y+  ++lG GsfGkV  a ++ tg++vAvK+++++++++ +  +kv+rEikilk + hp+i+rlyev+++++++y+v+e+v+ggel+d++  +g lse 
  KOO21238.1  13 YRLGKNLGIGSFGKVRLAEHQLTGHKVAVKILNRNRIRQLEMdEKVRREIKILKLFYHPHIIRLYEVIYTPTDIYMVMEFVPGGELFDFIVSNGRLSEP 111
                 677899******************************99988779******************************************************* PP

                 HHHHHHHHHHHHHHHHHHTTEE-SS-SGGGEEEETTTEEEE-SGTTSEESSSSCSBCTTTSCGGGS-HHHHTTSCB.SHHHHHHHHHHHHHHHHHSS-S CS
     Pkinase  99 eakkiakqilegleylHskgiiHrDlKpeNiLidekgelKitDFGlakelessskltsfvgtseYlAPEvlkeney.skkvDvWslGvilyelltgkpp 196
                 +a+++++q+++g+ey+H++ ++HrDlKpeN+L+d +++l+i+DFGl++ ++ +  +++ +g+++Y APEv++++ y +++vDvWs+Gvily ll+g+ p
  KOO21238.1 112 RARSMFQQLVSGVEYCHQHMVVHRDLKPENLLLDGEQQLRIADFGLSNVMKDGDFFKTSCGSPNYAAPEVISGRLYaGPEVDVWSCGVILYALLCGSLP 210
                 ***********************************************************************999999********************** PP

                 TTTSSHHHHHHHHHHTHHHHHHHCTSHH...HHHTTS-HHHHHHHHHHT-SSGCCSTTHHHHHTSGGG CS
     Pkinase 197 fsgekgkekvekeldqlekilkilgetkeklpeaseiseeakdllkkllkkdpkkRltaeellqhpyl 264
                 f +e+  + ++k+                 +  + ++s+e+kdl++++l +dp +R+t  e+ +h+++
  KOO21238.1 211 FDDENIPNLFKKIKGG-------------IFTLPGHMSDEIKDLISRMLVVDPLQRITLPEIRRHRWF 265
                 **55554433333333.............45667889******************************8 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  145.7   0.0   7.3e-46   1.4e-42       2     257 ..      14     261 ..      13     262 .. 0.90

  Alignments for each domain:
  == domain 1  score: 145.7 bits;  conditional E-value: 7.3e-46
                  EEEEEEEEESSEEEEEEEEETTTTSSEEEEEEEEESTTSSHHH..HHHHHHHHHHHHTS-BTTB--EEEEEESSSSEEEEEE--TTEBHHHHHHHTCT CS
  Pkinase_Tyr   2 elgkklGeGafGkVvegtlkgekekkevkVavKtlkeeateee..keelleeakimkklkhpnivkllgvctkeepllivteyvkgGdLlkfLrkkek 97 
                  +lgk+lG G+fGkV  ++ +     +  kVavK+l+++  ++    e++ +e+ki+k + hp+i++l+ v++    +++v+e+v+gG+L +f+ ++  
   KOO21238.1  14 RLGKNLGIGSFGKVRLAEHQ----LTGHKVAVKILNRNRIRQLemDEKVRREIKILKLFYHPHIIRLYEVIYTPTDIYMVMEFVPGGELFDFIVSN-- 105
                  5789*************999....8999*******7655444324899999********************************************9.. PP

                  TTSBHHHHHHHHHHHHHHHHHHHHTTEEEST-SGGGEEEEETTEEEE-STTTHEETTTSSEEEETTSSTSGGGGS-HHHHHHSEEE.HHHHHHHHHHH CS
  Pkinase_Tyr  98 ekltlkdllsfalqvAkGmeyLeskklvHrdlaarNvLlsenkvvkisDfGLardiekddeyvkkeeaklpvkWmapEslkekkft.sksDvWsfGvl 194
                   +l+  +  s+ +q+ +G+ey +++ +vHrdl   N Ll+ +++ +i+DfGL++ + kd +   k+++  + ++ apE+++ + +   + DvWs Gv+
   KOO21238.1 106 GRLSEPRARSMFQQLVSGVEYCHQHMVVHRDLKPENLLLDGEQQLRIADFGLSNVM-KDGDFF-KTSC-GSPNYAAPEVISGRLYAgPEVDVWSCGVI 200
                  9*****************************************************98.444443.4444.4569***********87369********* PP

                  HHHHHTTSSGTTTTSHHHHHHHHHHTTEES-BBTTSBHHHHHHHHHHT-SSGGGS--HHHHHH CS
  Pkinase_Tyr 195 lwEiftlgespypglkneevleklkegkrlekpekcpeelyelmkkcweedpeeRptfselve 257
                  l+ +++ g+ p+ + +  ++++k+k g   + p ++++e+++l+++ +  dp +R t+ e+++
   KOO21238.1 201 LYALLC-GSLPFDDENIPNLFKKIKGG-IFTLPGHMSDEIKDLISRMLVVDPLQRITLPEIRR 261
                  *****9.********999*99999755.6899*************************999875 PP

>> Kinase-like  Kinase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.1   0.0   3.5e-11   6.9e-08     145     284 ..     113     249 ..      88     253 .. 0.84

  Alignments for each domain:
  == domain 1  score: 32.1 bits;  conditional E-value: 3.5e-11
  Kinase-like 145 arlllTlqlirlaanLqakglvhgkftvdnllldekgglmlggf..taLvragtkvvlsevekgfaPpEllgsrggytrknktkmthkldaWqlGlvi 240
                  ar +   ql+  + + +++ +vh +++++nllld + +l + +f  ++ +++g+  + s     +a pE+++ r        +    ++d+W  G+  
   KOO21238.1 113 ARSMF-QQLVSGVEYCHQHMVVHRDLKPENLLLDGEQQLRIADFglSNVMKDGDFFKTSCGSPNYAAPEVISGR--------LYAGPEVDVWSCGVIL 201
                  66666.78999999***************************998446899*******99999*********994........456789********** PP

  Kinase-like 241 yriwclklPltla.teeakeew...kfklckkipekvkaLlkkfLqls 284
                  y + c  lP++    ++  ++    +f l  ++++++k L+ ++L ++
   KOO21238.1 202 YALLCGSLPFDDEnIPNLFKKIkggIFTLPGHMSDEIKDLISRMLVVD 249
                  **********8641455544446669******************9765 PP

>> KA1  Kinase associated domain 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.7   0.1       5.6   1.1e+04      22      28 ..     220     226 ..     220     228 .. 0.85
   2 !   30.9   0.1   8.7e-11   1.7e-07       7      45 .]     499     536 .]     494     536 .] 0.95

  Alignments for each domain:
  == domain 1  score: -3.7 bits;  conditional E-value: 5.6
         KA1  22 fkRlsGd 28 
                 fk+++G 
  KOO21238.1 220 FKKIKGG 226
                 9****97 PP

  == domain 2  score: 30.9 bits;  conditional E-value: 8.7e-11
         KA1   7 ievcKlpelslygvrfkRlsGdtwqYkrlasqilseLkL 45 
                 ++++K+++ s y++++++++Gd +++++++s +l eLkL
  KOO21238.1 499 LQLYKIQDDS-YLLDIRKVDGDVLPFMDVCSLLLGELKL 536
                 79********.***************************8 PP

>> AdenylateSensor  Adenylate sensor of SNF1-like protein kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.6   0.0   3.9e-10   7.8e-07       1      78 [.     429     514 ..     429     525 .. 0.71

  Alignments for each domain:
  == domain 1  score: 29.6 bits;  conditional E-value: 3.9e-10
                      SEEESEEEES-HHHHHHHHHHHHHHTTEEE-----GGGGEEEE.EEE-HHHHH..TT--E.....EEEEEEEEEEEETTEEEEEEE CS
  AdenylateSensor   1 rWhfGirsrsypldvlgeiyralknlGaewakPseeelwtikv.rwkykkaek..enked.....lmkleiqlfqlepnnylvdfk 78 
                      rWh+G++s   p d++ ei+r+l++l  ew    +  l    + r  ++  ++   ++++      +k+ +ql++++ ++yl+d++
       KOO21238.1 429 RWHLGVQSSLSPADMMLEIFRTLRTLRFEWKIVAQYSLKCRPCtRPPIEAPAAgtLDASSmavrcKVKVGLQLYKIQDDSYLLDIR 514
                      8*****************************98887555443331222322222222222222333566999*************95 PP

>> UBA_2  Ubiquitin associated domain (UBA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.5   0.4   2.2e-08   4.4e-05       1      43 [.     287     325 ..     287     327 .. 0.94

  Alignments for each domain:
  == domain 1  score: 23.5 bits;  conditional E-value: 2.2e-08
       UBA_2   1 IdedvvsaLsktMGYdkdeIieaLekaekskssneIkDAYlLm 43 
                 +dedv s+   + G+d++e +eaL+k+e++        AY L+
  KOO21238.1 287 LDEDVLSEVVMKIGFDRQELLEALQKQERN----QMTVAYYLI 325
                 69****************************....999999987 PP

>> APH  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.4   0.0     0.064   1.3e+02      29      99 ..      48     121 ..      34     131 .. 0.71
   2 !   12.6   0.1   4.7e-05     0.093     166     196 ..     130     158 ..     113     162 .. 0.80

  Alignments for each domain:
  == domain 1  score: 2.4 bits;  conditional E-value: 0.064
                 -TT..S-HHHHHHHHHHHHHHHHTT-.B--B-CTTBS-EEETTEEEEEEE----EE-SS......HHHHHHHHHHHHHHH CS
         APH  29 ppa..raaeeirrevallrlLakagv.pvPevlagdtddeeigllfalieyvpgrsllr......klsaaqlpellealg 99 
                 + +  + +e++rre ++l+l+    + +  ev++     ++i+    ++e+vpg  l +      +ls++ ++ ++++l+
  KOO21238.1  48 RIRqlEMDEKVRREIKILKLFYHPHIiRLYEVIY---TPTDIY---MVMEFVPGGELFDfivsngRLSEPRARSMFQQLV 121
                 4444557888899999998888555557777777...455555...7999999999988887777777777777776665 PP

  == domain 2  score: 12.6 bits;  conditional E-value: 4.7e-05
                 EEEE-SS-SGGGEEEC..TTEEEEE---TT- CS
         APH 166 tvllHgDlhpgNllvdpddgrvtGviDfeda 196
                 + ++H+Dl+p Nll+d +++++  + Df+++
  KOO21238.1 130 HMVVHRDLKPENLLLD-GEQQL-RIADFGLS 158
                 6789************.55555.57788765 PP

>> Totivirus_coat  Totivirus coat protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   3.7   2.9e-06    0.0057     630     729 ..     329     428 ..     314     449 .. 0.69

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 2.9e-06
  Totivirus_coat 630 gemeisgvppvsetappkkeanrtge.aglvsergaeqvsaeaetakpervargdpvrltahhaalrapqlpraggasdGgggvppppalgaaag 723
                       ++++g  pv ++a++  +++   + ag+   + a+  ++  +++++   a g+p  ++ah aa+  p+lp  +++ +Ggg++++ pa++ +++
      KOO21238.1 329 KRRKMLGASPVLRAAQMGTQQQLQLQgAGGEMLESAVAGGVADGAQHAAAAATGQPPPPAAHGAAAGQPPLPW-PQQMGGGGVMALSPAGSVGGA 422
                     6789999*******99766665544404444444455555555666677778*********************.556667777777776665555 PP

  Totivirus_coat 724 dapspp 729
                      a++  
      KOO21238.1 423 AAAPAR 428
                     544332 PP

>> RIO1  RIO1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.6   0.2   9.2e-06     0.018      52     150 ..      55     156 ..      28     163 .. 0.79

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 9.2e-06
                 HHHHHHHHHHHHHHHHTT.--S--EEEEETTE.EEEE--EETTEEGGBHHHCG.-..HHHHHHHHHHHHHHHHHHHHTSTEEESS-STTSEEEETT.EE CS
        RIO1  52 klwaekEfrnLkrleeag.vpvPkpielkrhv.lvmefigedgvaapklkdve.e..eeeaeelyeevleemrklykeaglvHaDLSeyNvlvded.kv 144
                    +++E+++Lk  ++ + ++  ++i    ++ +vmef+   g ++ +    + +  e  a+++++++++ ++    ++ +vH DL   N+l+d + ++
  KOO21238.1  55 DEKVRREIKILKLFYHPHiIRLYEVIYTPTDIyMVMEFVP--GGELFDFIVSNgRlsEPRARSMFQQLVSGVEYCH-QHMVVHRDLKPENLLLDGEqQL 150
                 4567899999999988776899999888777659******..666666555554345999**********887776.999*************999788 PP

                 EE--GT CS
        RIO1 145 viIDvs 150
                  i D++
  KOO21238.1 151 RIADFG 156
                 888875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (536 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       627  (0.0349713); expected 358.6 (0.02)
Passed bias filter:                      528  (0.0294495); expected 358.6 (0.02)
Passed Vit filter:                        58  (0.00323498); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.60u 0.28s 00:00:00.88 Elapsed: 00:00:00.44
# Mc/sec: 3659.30
//
Query:       KOO21239.1  [L=174]
Description: hypothetical protein Ctob_000812 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.037   14.2   0.1      0.074   13.3   0.1    1.5  1  DUF2475    Protein of unknown function (DUF2475)


Domain annotation for each model (and alignments):
>> DUF2475  Protein of unknown function (DUF2475)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.1   4.1e-06     0.074       3      14 ..      94     105 ..      92     114 .. 0.89

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 4.1e-06
     DUF2475   3 klmPGYrGyvPq 14 
                 k+mPGY+Gy+P+
  KOO21239.1  94 KFMPGYSGYIPN 105
                 89*********7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (174 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       188  (0.0104858); expected 358.6 (0.02)
Passed bias filter:                      173  (0.00964917); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.26s 00:00:00.65 Elapsed: 00:00:00.42
# Mc/sec: 1240.47
//
Query:       KOO21240.1  [L=592]
Description: hypothetical protein Ctob_006789 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.2e-21   76.1   0.0    4.3e-21   75.2   0.0    1.4  1  DUF547    Protein of unknown function, DUF547
    7.3e-06   25.8   2.3     0.0023   17.9   0.1    3.7  3  Arm       Armadillo/beta-catenin-like repeat


Domain annotation for each model (and alignments):
>> DUF547  Protein of unknown function, DUF547
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   75.2   0.0   4.8e-25   4.3e-21       6     120 ..     422     551 ..     418     553 .. 0.83

  Alignments for each domain:
  == domain 1  score: 75.2 bits;  conditional E-value: 4.8e-25
      DUF547   6 reeklAfwiNlYNalvlhaileyg.....pesnvkrlslfkkaayniggqslslddIehgiLrknlsrlkkka.........rderrkya.leqpdpri 89 
                 ++++lAfw+N+YN+++++ + ++      +es    l++ + + ynigg s+s+ +Ieh iLr++ +r++  +         +d+rr+ a    p p++
  KOO21240.1 422 DDARLAFWLNVYNLICMQGFAANArqvpcSESTLAVLRMHSSFVYNIGGFSISAIEIEHAILRASKPRPSFFIaflipkfssHDPRRALAfSGLPSPLL 520
                 689******************77677765444455555669************************55555444777777788666666551568***** PP

      DUF547  90 hfaLvcgsascpplriytaerleeqLeaaae 120
                  f Lv g+a +pplr+y+a  +++qL  +a+
  KOO21240.1 521 SFGLVAGTAFSPPLRAYSAGAVHTQLAMNAR 551
                 **************************98886 PP

>> Arm  Armadillo/beta-catenin-like repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.5   0.1     0.039   3.5e+02      21      40 ..      25      44 ..      25      45 .. 0.85
   2 !    3.8   0.0     0.007        63       8      25 ..      55      72 ..      51      74 .. 0.86
   3 !   17.9   0.1   2.6e-07    0.0023       5      40 ..      92     127 ..      88     128 .. 0.91

  Alignments for each domain:
  == domain 1  score: 1.5 bits;  conditional E-value: 0.039
                TTTSSHHHHHHHHHHHHHHT CS
         Arm 21 LssedeevqeeAawALsNLa 40
                L+s d +vq eAa  L+ L+
  KOO21240.1 25 LRSSDARVQAEAANRLWQLS 44
                789*********98777776 PP

  == domain 2  score: 3.8 bits;  conditional E-value: 0.007
                HHHTTHHHHHHHHTTTSS CS
         Arm  8 vieaGavppLvrLLssed 25
                +  aGa+  Lv+LL+++ 
  KOO21240.1 55 IAAAGAMGLLVELLRCPE 72
                6789***********986 PP

  == domain 3  score: 17.9 bits;  conditional E-value: 2.6e-07
                 HHHHHHTTHHHHHHHHTTTSSHHHHHHHHHHHHHHT CS
         Arm   5 kdavieaGavppLvrLLssedeevqeeAawALsNLa 40 
                 k a+++aGa+ pLv++L+++d + qe++a  L+NL+
  KOO21240.1  92 KAAIVNAGALAPLVEMLRTGDADDQEVVAMVLANLS 127
                 789*******************99999999999997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (592 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       759  (0.0423336); expected 358.6 (0.02)
Passed bias filter:                      380  (0.0211947); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.62u 0.27s 00:00:00.89 Elapsed: 00:00:00.46
# Mc/sec: 3839.38
//
Query:       KOO21241.1  [L=421]
Description: extl3 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.9e-08   33.0   0.0    8.1e-08   32.3   0.0    1.3  1  Methyltransf_23  Methyltransferase domain
    3.4e-07   30.9   0.0    6.5e-07   30.0   0.0    1.5  1  Methyltransf_12  Methyltransferase domain
    1.1e-05   25.9   0.0    2.2e-05   25.0   0.0    1.5  1  Methyltransf_11  Methyltransferase domain
     0.0026   18.4   0.0     0.0053   17.4   0.0    1.6  1  Methyltransf_25  Methyltransferase domain


Domain annotation for each model (and alignments):
>> Methyltransf_23  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.3   0.0   1.8e-11   8.1e-08      20     124 ..     226     345 ..     205     401 .. 0.73

  Alignments for each domain:
  == domain 1  score: 32.3 bits;  conditional E-value: 1.8e-11
  Methyltransf_23  20 lraggrvLdiGcGtGillevlren.gf...svtgvDlspeaveiaekakkaqkdqfdeqeaaepqg....................kfdlIvlr 89 
                       +a g vL+iG G  + +++l  + g    s+t+vD+        + +    k +++ ++     +                      d+ v+ 
       KOO21241.1 226 PDALGHVLEIGSGPYTQTQSLLLRpGSstsSITLVDPLA------RVFMDRTKGCTYKEQ-----RlhgrpvrvlnvpaeslslthVADTLVMV 308
                      367789*******998888884432223469******64......355556666664443.....233344666666667888888******** PP

  Methyltransf_23  90 evlehvpdppellrqiatllkpgGylllse..plasl 124
                       vl +v+d+p++l+ +++ lkpgG+l++ +  ++a++
       KOO21241.1 309 SVLQSVRDVPAVLQAAYNALKPGGWLVFADrvFDARW 345
                      ****************************995445544 PP

>> Methyltransf_12  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.0   0.0   1.5e-10   6.5e-07       1      99 []     233     334 ..     233     334 .. 0.87

  Alignments for each domain:
  == domain 1  score: 30.0 bits;  conditional E-value: 1.5e-10
  Methyltransf_12   1 LeiGcGtGsllrallekl..pdieytgvDispsai.edakeklakrennnnnnvelealdlldldggssfDlvvasnvlhhlkdirevldnirk 91 
                      LeiG+G  + ++ ll +   +++++t vD+ ++++ +++k  + k+++++   v++ +  +++l+  +  D+ v+ +vl+ ++d+ +vl+ +++
       KOO21241.1 233 LEIGSGPYTQTQSLLLRPgsSTSSITLVDPLARVFmDRTKGCTYKEQRLHGRPVRVLNVPAESLSLTHVADTLVMVSVLQSVRDVPAVLQAAYN 326
                      67777777777777766677899999***988877688888888889999999999999999999999************************** PP

  Methyltransf_12  92 lLkpgGrl 99 
                      +LkpgG+l
       KOO21241.1 327 ALKPGGWL 334
                      ******97 PP

>> Methyltransf_11  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.0   0.0   4.8e-09   2.2e-05       1      96 []     233     336 ..     233     336 .. 0.77

  Alignments for each domain:
  == domain 1  score: 25.0 bits;  conditional E-value: 4.8e-09
                      EEET-TTSHHHHHHH.HTT...SEEEEEES-HHHH.......HHHHHHCCHHT-...EEEETTEECCCTSS-TT-EEEEEEES-CCC-CCHHHH CS
  Methyltransf_11   1 LdvGcGtGrlaeala.krg...arvvgvDlskeml.......klakekaseegl...kvefvvadaeklpfednsfDlvvssevlhhvedpeka 80 
                      L++G+G    ++ l  + g   ++++ vD+ +++        ++ +++     l    v+++   ae+l +     D  v+ +vl+ v d+ ++
       KOO21241.1 233 LEIGSGPYTQTQSLLlRPGsstSSITLVDPLARVFmdrtkgcTYKEQR-----LhgrPVRVLNVPAESLSLTH-VADTLVMVSVLQSVRDVPAV 320
                      788888777777766555566788888888777765433222222444.....14555999********9988.9******************* PP

                      HHHHHHHEEEEEEEEE CS
  Methyltransf_11  81 lkeiaRvLkpgGllvi 96 
                      l+ ++  LkpgG+lv+
       KOO21241.1 321 LQAAYNALKPGGWLVF 336
                      **************97 PP

>> Methyltransf_25  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.4   0.0   1.2e-06    0.0053       1      97 []     232     332 ..     232     332 .. 0.78

  Alignments for each domain:
  == domain 1  score: 17.4 bits;  conditional E-value: 1.2e-06
                      EEEET-TTSHHHHHHHCTST..SSEEEEEESSH.HHHHHHH.HHHHHTTT...TEEEEESBCCGBSSSTTTEEEEEEESTGGGSSHHHHHHHHH CS
  Methyltransf_25   1 vLdlGcGtGrltlalakrlg..kakvtgvDise.emleaar.eraeeegl...nvefvqgdaedlpfedgsfDlvvssgalhhlsdedlekalk 87 
                      vL++G G+ + t+ l+ r g   +++t vD+ +  ++++++   ++e++l    v++++  ae+l++ +   D  v++ +l+ +   d++++l+
       KOO21241.1 232 VLEIGSGPYTQTQSLLLRPGssTSSITLVDPLArVFMDRTKgCTYKEQRLhgrPVRVLNVPAESLSLTH-VADTLVMVSVLQSVR--DVPAVLQ 322
                      8********99999998874569*******965155677774233333335569999999999999876.778888866788765..99***** PP

                      HHHHHEEEEE CS
  Methyltransf_25  88 eiarvLkpgG 97 
                       ++++LkpgG
       KOO21241.1 323 AAYNALKPGG 332
                      *********9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (421 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       508  (0.028334); expected 358.6 (0.02)
Passed bias filter:                      382  (0.0213063); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.48u 0.25s 00:00:00.73 Elapsed: 00:00:00.40
# Mc/sec: 3185.44
//
Query:       KOO21242.1  [L=1724]
Description: hypothetical protein Ctob_006790 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      9e-10   39.5   0.4      8e-09   36.5   0.2    2.8  2  Methyltransf_24  Methyltransferase domain
    1.1e-09   37.8   0.1    0.00064   18.8   0.0    2.8  3  MOR2-PAG1_N      Cell morphogenesis N-terminal
     0.0013   18.7   0.0     0.0047   16.8   0.0    1.9  1  MOR2-PAG1_C      Cell morphogenesis C-terminal


Domain annotation for each model (and alignments):
>> Methyltransf_24  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.5   0.2   1.3e-12     8e-09       2     106 .]      37     142 ..      36     142 .. 0.86
   2 ?   -1.9   0.0       1.2   7.1e+03      39      78 ..     720     775 ..     692     790 .. 0.64

  Alignments for each domain:
  == domain 1  score: 36.5 bits;  conditional E-value: 1.3e-12
  Methyltransf_24   2 EiGvysGvstlwllralrrngagrlvavdhdpg..aeeaaalareaglddrvrlikadseealasla...agsiDllfiDgghaaeavledlea 90 
                      E+G+  G s++++l a  +    r++++d +    ++  a l+r+  +  r++l+++ds+e+++ +a   +g + l+++Dg+h+   +  dl++
       KOO21242.1  37 EVGMNGGHSAVAMLHANPSL---RVHTFDIMYWnySWPIAHLLRT-LFGGRFTLHSGDSRETVPAWAarhHGLCNLVLVDGDHTPLGAELDLRN 126
                      99********9999765555...5788888552113447778877.99******************9999999********************* PP

  Methyltransf_24  91 llprlapggvvlfdDi 106
                      l+   ap+++v++dD+
       KOO21242.1 127 LRAAAAPNATVVVDDT 142
                      ***************7 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 1.2
  Methyltransf_24  39 aalare.aglddrvrlikads...........eealasla..........agsiDllfiDgg 78 
                      aala++ a+++dr+++i+++                   +          ++s+ +l+ D +
       KOO21242.1 720 AALAEQrAYFADRIQMIVERCdcavgsrvmglA------NtalgiaplvqDDSVQVLLTDVS 775
                      455555789999999998887444433333330......03333444555667777777766 PP

>> MOR2-PAG1_N  Cell morphogenesis N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.8   0.0   1.1e-07   0.00064       6     216 ..     306     524 ..     301     527 .. 0.79
   2 ?   -1.6   0.0      0.16   9.9e+02     256     313 ..     635     694 ..     631     714 .. 0.78
   3 !   15.5   0.0   1.1e-06    0.0064     396     517 ..     729     854 ..     708     900 .. 0.71

  Alignments for each domain:
  == domain 1  score: 18.8 bits;  conditional E-value: 1.1e-07
  MOR2-PAG1_N   6 vsiyilcrvLieilkq..stkeslteelgekLeeivFkqlkk.adpesl........sssplrlanwnlfAelLGvlSeirFasVsdrFiaeLeklrk 92 
                  v+   +c  L+++l+    + + +++++g+   +++F q+    +++ +         + +l ++ +   + +LG+l+++rF+++ + F + + + ++
   KOO21242.1 306 VVCVAVCDLLVAVLQPreGRSSPIDPDIGNVCVQLAFAQFYPqSERANTsrqllhpdLATSLSQRTVASWSSVLGHLARSRFDQIVREFAQRIHHAKS 403
                  555667888888887743446677888888888888888865333333311122222223344455577889*********************99999 PP

  MOR2-PAG1_N  93 easkeleaklellirGmrylklkvypeeafeesadFlkslakffeea.kgsevkhAyaellselLlpv.aasataevnhpk.waeavellypraakms 187
                        + ++  l+ G++ + + +++  a    +d  +++ +  ++  k    + ++a  l++l+ ++   +++ ++ + + +   +  +++++++  
   KOO21242.1 404 ------TDEVLILLVGIQSVTIPHISAPACAPLLDQFRQIVTSDKKLyKIDTTRLCLAYNLEQLVRQIdCGQIEGDMRVMDsLYTSLHAMFNTLQEWG 495
                  ......899999***************9998888888888888888658889999*************445666777665459*************** PP

  MOR2-PAG1_N 188 kkpkhwnaafpLvttlLCvspkefFlanW 216
                  +kp+   ++ +L+++++C sp++f ++++
   KOO21242.1 496 EKPEIQMTISQLLALIVCHSPPAFWQSHM 524
                  *****99*****************98875 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 0.16
  MOR2-PAG1_N 256 ntttkkLeeilkllfpkgk..rklitpd.delleplvqiirfiaskhldfafkniifplln 313
                  ++++++L+ +++ lf ++   r++ +p+  e  ++lv++i  +a ++l ++++  i  ll 
   KOO21242.1 635 KEMMERLRFVVEKLFARKAagRTVRLPRlLECGDVLVYLIGQVAAHDLTVGME-AIEALLG 694
                  678999999**99996654356666665256779******************9.6666665 PP

  == domain 3  score: 15.5 bits;  conditional E-value: 1.1e-06
  MOR2-PAG1_N 396 vskilgkililldqtvGrqlvldeklss...pktiaesfsfrkdd.haavd.ekqakleLlktaiealPrclpes..ipfkslielLcrgtvHvdpei 486
                  +   ++ i+  +d +vG+ ++   +      p  +++s+++  +d +   d e    + +++ ai ++P++lp++  ++ +    +   + +H+d e+
   KOO21242.1 729 FADRIQMIVERCDCAVGSRVMGLANTALgiaPLVQDDSVQVLLTDvSRRKDrELAVRIAMYREAIGCIPMTLPPAclMTHQ----FVGELILHADGEL 822
                  666678888899999996665554443134455577888884445255556688899*****************9633333....3445568****** PP

  MOR2-PAG1_N 487 aesaaqaLkaliar.qkkrqqvvtgfarfifk 517
                  a++a+++ ++l  + ++ r++++  fa+++ +
   KOO21242.1 823 ANQASRVVQQLTLHePSTRKDMLACFANLLTN 854
                  **********98888*************9933 PP

>> MOR2-PAG1_C  Cell morphogenesis C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   0.0   7.8e-07    0.0047     139     211 ..    1558    1634 ..    1527    1666 .. 0.88

  Alignments for each domain:
  == domain 1  score: 16.8 bits;  conditional E-value: 7.8e-07
  MOR2-PAG1_C  139 lenLarvltsyakgrf...r.tkddflkqvvkalreayfpehesealvlllgllengpewlrrktlqiLkvllqeid 211 
                    +++arvl+ + +g+f   r +++++l+q++  l +ay+p h+ +++ +l +ll+ gp    + ++ ++   lq+ +
   KOO21242.1 1558 APSMARVLECFFMGEFgggRaAASELLAQLCHPLFAAYLPSHSDRLAQMLTRLLHAGPVAWEEPLMLLVAYALQHPQ 1634
                   5678899999999988444346799*********************************************9999865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1724 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       417  (0.0232584); expected 358.6 (0.02)
Passed bias filter:                      305  (0.0170115); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.85u 0.29s 00:00:01.13 Elapsed: 00:00:00.43
# Mc/sec: 12149.97
//
Query:       KOO21243.1  [L=404]
Description: ATP-dependent DNA helicase, partial [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    7.7e-15   55.1   0.0    1.4e-14   54.2   0.0    1.4  1  DEAD        DEAD/DEAH box helicase
    1.8e-05   25.1   0.0    3.3e-05   24.2   0.0    1.5  1  Helicase_C  Helicase conserved C-terminal domain


Domain annotation for each model (and alignments):
>> DEAD  DEAD/DEAH box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.2   0.0   1.6e-18   1.4e-14       3     173 ..      93     257 ..      91     260 .. 0.83

  Alignments for each domain:
  == domain 1  score: 54.2 bits;  conditional E-value: 1.6e-18
                 HHHHHHHHHHTTCEEEEEESTTSSHHHHHHHHHHHHHHHSTTSTS-EEEEEESSHHHHHHHHHHHHHHTTTST.SEEEEEETTSSHHHHHHHHHTTCSE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD   3 iQaeaiplilgggdvlvaaeTGsGKTlaflipvlqivyetkgktgpkalivePtreLaeqtlnnlkkfkkyid.lrvlliiggvaardqlskldngvdi 100
                  Q+++++++l g+d lv  +T  GK+l++++p+l         tg  ++++eP  +L+ +++ +l+ +    +   +   +++ +ar++ ++ + + ++
  KOO21243.1  93 GQRHVVEAVLAGRDALVVWPTDRGKSLCYQLPAL--------HTGSITVVIEPNISLMDNQVAELNARAAASGtAPWATQLHSADARNESAAARGDFNL 183
                 699*******************************........78999**********************986634444556777777888888666*** PP

                 EEEEHHHHHH.HH....HCTSSHCTTEEEEEEETHHHHHHT..TTHHHHHHHHHHSHHHCTTSTTTSEEEEEESSBSHHH CS
                 xxxxxxxxxx.xx....xxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD 101 vvgtpgrldd.ll....stgklnlsqvrflVlDEadrlldq..gfsdfinrilnqlpqitcdgklqrqvivlSATlpkdv 173
                 v+  p+r ++  +    ++ + nl +++++ +DEa++++++  +f+++ ++ l ql+q     +    +++l+AT+++ v
  KOO21243.1 184 VFISPQRAMSpRFlqlmKSWHANL-KLKLVAVDEAHCISESddSFRREFRE-LGQLRQCVPGVP----FLALTATATSHV 257
                 *****8888742246555555555.689**********9998889999999.899988887777....999***998766 PP

>> Helicase_C  Helicase conserved C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.2   0.0   3.7e-09   3.3e-05      14      96 ..     306     399 ..     295     404 .] 0.72

  Alignments for each domain:
  == domain 1  score: 24.2 bits;  conditional E-value: 3.7e-09
                 TTTSEEEEEESSHHHHHH.HHHHHHHT....TSTEEEESTT.......STHHHHHHHHHHHHTTSSSEEEESGGGTSSSTSTTESEEEESSSSSS CS
  Helicase_C  14 eeggkilifvntidrlek.vklllekk....gikvavlhge.......lpqnereeileqfnkgesdvLiatdvaerGidipkvnlVinfdlprn 96 
                 ++g  +l++v++ +++e  +  l++ k    ++ v ++hg         + +er ++l++f +g+++v++at + + Gi+  +++ Vi++++p n
  KOO21243.1 306 AHGTPALVYVTRPKDAELlLAALRR-KlddsSLVVETYHGPgrshsvkQSDSERSRVLSDFLAGKVHVVVATCAFGLGINKRGIRQVIHIGVPHN 399
                 5666677777777766433222211.123445666666665556666588999***************************************988 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (404 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       447  (0.0249317); expected 358.6 (0.02)
Passed bias filter:                      385  (0.0214736); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.47u 0.24s 00:00:00.71 Elapsed: 00:00:00.41
# Mc/sec: 2990.82
//
Query:       KOO21244.1  [L=1096]
Description: hypothetical protein Ctob_006198 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
  ------ inclusion threshold ------
      0.037   13.7   0.0      0.096   12.4   0.0    1.8  1  TPR_11          TPR repeat
        1.6    8.6   6.5         11    5.9   0.3    3.7  3  Rad50_zn_hook   Rad50 zinc hook motif
        2.6    8.1   5.8       0.55   10.2   0.1    3.0  3  Pox_A_type_inc  Viral A-type inclusion protein repeat


Domain annotation for each model (and alignments):
>> TPR_11  TPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   1.6e-05     0.096       5      42 .]     474     511 ..     472     511 .. 0.95

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 1.6e-05
      TPR_11   5 yeqGkyeeAieaYkkAlkldPdnaeayynLGlayykqG 42 
                 +e G+ ++A+  +++A+ ldP+ ++ ++  G+ ++k+G
  KOO21244.1 474 HESGDCKGALGLLEEAIGLDPQTPNYLLRAGDMHLKLG 511
                 689999****************************9998 PP

>> Rad50_zn_hook  Rad50 zinc hook motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.9   0.3    0.0019        11      26      44 ..      36      54 ..      36      59 .. 0.91
   2 ?    3.8   0.1    0.0089        53      29      48 ..     807     826 ..     805     829 .. 0.87
   3 ?   -0.4   0.2      0.18   1.1e+03      33      50 ..     832     850 ..     829     853 .. 0.55

  Alignments for each domain:
  == domain 1  score: 5.9 bits;  conditional E-value: 0.0019
                   --EE-HHHHHHHHHHHHHH CS
  Rad50_zn_hook 26 gReldeehrseLikelqsk 44
                   +Rel+ee+++eL++el+++
     KOO21244.1 36 ERELGEEKMRELAEELRAQ 54
                   69**************986 PP

  == domain 2  score: 3.8 bits;  conditional E-value: 0.0089
                    E-HHHHHHHHHHHHHHHHHH CS
  Rad50_zn_hook  29 ldeehrseLikelqsklerl 48 
                    l++ +r+++i++l++++++ 
     KOO21244.1 807 LSSVERQSIIQKLHAEMDEA 826
                    78899***********9986 PP

  == domain 3  score: -0.4 bits;  conditional E-value: 0.18
                    H.HHHHHHHHHHHHHHHH. CS
  Rad50_zn_hook  33 h.rseLikelqsklerlpe 50 
                    +   eL  +lq+k++++ e
     KOO21244.1 832 EfLDELKMQLQAKHKSKAE 850
                    4455666666666666555 PP

>> Pox_A_type_inc  Viral A-type inclusion protein repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.2      0.71   4.3e+03      11      17 ..      33      39 ..      33      41 .. 0.79
   2 ?   10.2   0.1   9.2e-05      0.55       1      17 [.     384     400 ..     384     402 .. 0.89
   3 ?   -2.6   0.2         1   6.2e+03       2       8 ..     449     455 ..     448     455 .. 0.87

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 0.71
  Pox_A_type_inc 11 sDLErqL 17
                    +++Er+L
      KOO21244.1 33 REIEREL 39
                    6899999 PP

  == domain 2  score: 10.2 bits;  conditional E-value: 9.2e-05
  Pox_A_type_inc   1 rEmsrlRsRIsDLErqL 17 
                     +E+++ R RI DLEr+ 
      KOO21244.1 384 TEVEAVRQRIADLERKM 400
                     69*************85 PP

  == domain 3  score: -2.6 bits;  conditional E-value: 1
  Pox_A_type_inc   2 EmsrlRs 8  
                     E++rlR+
      KOO21244.1 449 EVTRLRE 455
                     9****96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1096 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1946  (0.108539); expected 358.6 (0.02)
Passed bias filter:                      483  (0.0269396); expected 358.6 (0.02)
Passed Vit filter:                        86  (0.0047967); expected 17.9 (0.001)
Passed Fwd filter:                        18  (0.00100396); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 1.08u 0.34s 00:00:01.42 Elapsed: 00:00:00.50
# Mc/sec: 6654.50
//
Query:       KOO21245.1  [L=370]
Description: hypothetical protein Ctob_006199 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.4e-10   41.5  30.6    1.3e-06   28.6  11.5    2.1  2  EamA      EamA-like transporter family


Domain annotation for each model (and alignments):
>> EamA  EamA-like transporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.6  11.5   7.4e-11   1.3e-06       3     136 ..      18     151 ..      16     152 .. 0.90
   2 !   19.0  11.1   6.6e-08    0.0012       2     133 ..     193     330 ..     192     332 .. 0.82

  Alignments for each domain:
  == domain 1  score: 28.6 bits;  conditional E-value: 7.4e-11
        EamA   3 gillallaalfwaiyfvlskillrkvspl.tltfvrfliagillliiallkegkl.aklslkdwllllllgllgtvlafllffyalkktsasnaslits 99 
                 g+ +  ++a++++i  ++ +i+  +  pl  +++vrf + ++++   ++ k+ +l ++ +  ++++l+   +++++ a  l++++    + + a+ ++ 
  KOO21245.1  18 GYGMTTVSAVVYSILVLTVRIATDSGAPLmLVLAVRFGAQTAAFACQMAAKRMPLrPVTRSGQLFWLAAGTTISSATA--LYMIGAALAPLGDAGALSG 114
                 67778899******************99945566****9999999999999999966777777888888888888888..9****************** PP

        EamA 100 lePvftlilsvlllgekltlkqllgivlillGvllil 136
                 l Pv tli++ l+l+e+l++  + +i+l+ +Gv li+
  KOO21245.1 115 LYPVGTLIIARLWLHEPLGIAGIPSICLSAAGVTLIS 151
                 ***********************************97 PP

  == domain 2  score: 19.0 bits;  conditional E-value: 6.6e-08
        EamA   2 lgillallaalfwaiyfvlskillrkvspltltfvrfliagillliiallkegkl....aklslkd.wllllllgllgtvlaf.llffyalkktsasna 94 
                 +g+  al+++ + ++++v+ +++ ++++ l+   + ++++ ++ l+++l     +    +  ++   + +ll +g  g+v+   l + + ++   a++ 
  KOO21245.1 193 WGLAAALASSALNSVSYVTVRQAGTSMDALQWMLLYSMLGLLVTLPLCLQPSADQlgfsSFAPWAKvLPCLLAVGGWGVVAQTlLGYGQMMRGCRAGIT 291
                 89999*************************555555558********999999888885555555545555666665555544233556678899**** PP

        EamA  95 slitslePvftlilsvlllgekltlkqllgivlillGvl 133
                 +l++s e v++ +l v++l ++ t   + g++lil++++
  KOO21245.1 292 ALLSSSEIVWSYVLQVIVLDQPTTPVAISGAALILVAII 330
                 ************************************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (370 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       439  (0.0244855); expected 358.6 (0.02)
Passed bias filter:                      217  (0.0121033); expected 358.6 (0.02)
Passed Vit filter:                        12  (0.000669307); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.27s 00:00:00.72 Elapsed: 00:00:00.43
# Mc/sec: 2604.17
//
Query:       KOO21246.1  [L=266]
Description: hypothetical protein Ctob_006196 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (266 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       721  (0.0402142); expected 358.6 (0.02)
Passed bias filter:                      472  (0.0263261); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.45u 0.25s 00:00:00.70 Elapsed: 00:00:00.41
# Mc/sec: 1932.53
//
Query:       KOO21247.1  [L=269]
Description: hypothetical protein Ctob_006197 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.6e-08   33.6  11.3       0.22   12.5   0.2    5.3  5  SHIPPO-rpt  Sperm-tail PG-rich repeat


Domain annotation for each model (and alignments):
>> SHIPPO-rpt  Sperm-tail PG-rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    3.4   0.1    0.0095   1.7e+02       2      16 ..      28      44 ..      27      58 .. 0.61
   2 !   12.5   0.2   1.3e-05      0.22       4      27 ..      76     110 ..      75     114 .. 0.87
   3 ?    0.7   0.1     0.069   1.2e+03       1      19 [.     124     148 ..     124     158 .. 0.63
   4 !    9.8   0.1   8.5e-05       1.5       2      11 ..     169     178 ..     169     203 .. 0.76
   5 !   10.7   0.1   4.5e-05      0.81       3      19 ..     217     232 ..     216     248 .. 0.81

  Alignments for each domain:
  == domain 1  score: 3.4 bits;  conditional E-value: 0.0095
  SHIPPO-rpt  2 PGPGtYkpnk..nvpsn 16
                 GP +Y+p    ++  n
  KOO21247.1 28 VGPASYEPRGvsSSRLN 44
                6*******995533333 PP

  == domain 2  score: 12.5 bits;  conditional E-value: 1.3e-05
  SHIPPO-rpt   4 PGtYkpnk..........nvpsn.ksaPkysfGqr 27 
                 PG+Y+p+           +++++  ++ + sfG+ 
  KOO21247.1  76 PGAYDPDVhrnfkatserTFYRKaNKSGAGSFGSL 110
                 ******************6666666999****985 PP

  == domain 3  score: 0.7 bits;  conditional E-value: 0.069
  SHIPPO-rpt   1 lPGPGtYkpnk.....nvpsn.ksa 19 
                 +P P tY  ++     +  s+ ksa
  KOO21247.1 124 TPSPTTYADETmkgmsQHASKmKSA 148
                 7999999999987666444443333 PP

  == domain 4  score: 9.8 bits;  conditional E-value: 8.5e-05
  SHIPPO-rpt   2 PGPGtYkpnk 11 
                 PGPG Y+p+ 
  KOO21247.1 169 PGPGKYSPKF 178
                 9*******98 PP

  == domain 5  score: 10.7 bits;  conditional E-value: 4.5e-05
  SHIPPO-rpt   3 GPGtYkpnknvpsn.ksa 19 
                 GPGtY+ ++  +sn  +a
  KOO21247.1 217 GPGTYSSDS--LSNgAKA 232
                 9********..**94443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (269 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       334  (0.018629); expected 358.6 (0.02)
Passed bias filter:                      231  (0.0128842); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.25s 00:00:00.69 Elapsed: 00:00:00.42
# Mc/sec: 1927.54
//
Query:       KOO21248.1  [L=274]
Description: lipid phosphate phosphatase 3 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.4e-23   81.6   1.4    6.6e-23   81.0   1.4    1.2  1  PAP2      PAP2 superfamily
    1.1e-08   35.3   0.0    1.6e-08   34.7   0.0    1.2  1  BTB       BTB/POZ domain
  ------ inclusion threshold ------
      0.085   12.5   6.2       0.74    9.5   6.2    2.1  1  PAP2_3    PAP2 superfamily


Domain annotation for each model (and alignments):
>> PAP2  PAP2 superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   81.0   1.4   1.1e-26   6.6e-23      21     132 ..     122     239 ..      98     242 .. 0.90

  Alignments for each domain:
  == domain 1  score: 81.0 bits;  conditional E-value: 1.1e-26
        PAP2  21 dlvgrpRPfflaeetkldtqvstletses..keakesfPSgHsafafalalllalllrrkrkkig.......lvllalillllavlvalsRlylgvHfl 110
                   vgr+RP+fla++ + ++ ++      s   e+++sfPSgHsa +fa++ +++l l+ +  +         ++ ++++++lla+ valsR+++++H++
  KOO21248.1 122 LKVGRLRPDFLARCVPVNGVCTGVA---SvvEEGRRSFPSGHSALSFAGLGFVSLCLGARLVQAPgrsgalwKLCVVALPWLLALHVALSRVADYWHHW 217
                 5689***************976543...4569*******************************99********************************** PP

        PAP2 111 sDvlaGlliGialaalayrlvq 132
                  Dvl+G l+G + a++ayrl++
  KOO21248.1 218 EDVLVGSLLGHVAAYAAYRLRF 239
                 ******************9976 PP

>> BTB  BTB/POZ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.7   0.0   2.8e-12   1.6e-08       9      78 ..      29     108 ..      24     127 .. 0.80

  Alignments for each domain:
  == domain 1  score: 34.7 bits;  conditional E-value: 2.8e-12
                 TTS-EEEEETT...TEEEEE-HHHHHHH...-HHHHHHHTST....TTTTCCCEEEEETTSGHHHHHHHHHHHHHSEEEC CS
         BTB   9 elcDvtlvvgd...gkefkahkavLaar...SpyFkalftsk....eieessvseielddvepeafealLefiYtgelei 78 
                 +l+D t+ v     +++f +hk+ Laa    S+yFk+ ft++    ++  s+++++el++  ++af   L+f+Yt+  ++
  KOO21248.1  29 SLSDWTIIVTCgarTQTFNVHKVMLAAGvqlSEYFKSVFTGGgrdlREGISKTTTLELEETAADAFPHYLDFAYTALGST 108
                 567777666655689***********95555************999666667779********************85544 PP

>> PAP2_3  PAP2 superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   6.2   0.00012      0.74     120     189 ..     149     232 ..     100     233 .. 0.68

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 0.00012
      PAP2_3 120 ienglaafPSlHvawal.......lvalalwrlrrkr.........llrvlalllnvlmivatvatgnHYlvDviaGvalalvaia 189
                 +e+g  +fPS H a+++       l++   +rl + +          + +l +ll++ ++++ va  +H + Dv++G +l+ va++
  KOO21248.1 149 VEEGRRSFPSGHSALSFaglgfvsLCLG--ARLVQAPgrsgalwklCVVALPWLLALHVALSRVADYWHHWEDVLVGSLLGHVAAY 232
                 4455555888887776522221111111..2222222334544433566777888999999********************99987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (274 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       274  (0.0152825); expected 358.6 (0.02)
Passed bias filter:                      225  (0.0125495); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.42u 0.24s 00:00:00.65 Elapsed: 00:00:00.40
# Mc/sec: 2056.78
//
Query:       KOO21249.1  [L=306]
Description: hypothetical protein Ctob_006201 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (306 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       654  (0.0364772); expected 358.6 (0.02)
Passed bias filter:                      285  (0.015896); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.43u 0.19s 00:00:00.62 Elapsed: 00:00:00.35
# Mc/sec: 2610.97
//
Query:       KOO21250.1  [L=947]
Description: protein nlrc3 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.4e-27   93.3  36.5     0.0061   16.5   0.4   14.8 15  LRR_6     Leucine Rich repeat
    0.00037   20.6   3.2         51    5.0   0.0    8.1 10  LRR_1     Leucine Rich Repeat
    0.00058   20.2   7.3       0.71   10.4   0.0    6.8  7  LRR_4     Leucine Rich repeats (2 copies)
  ------ inclusion threshold ------
       0.21   11.9   7.3         48    4.3   0.0    5.4  6  PCP       Peridinin-chlorophyll A binding protein
        2.7    8.0   5.4         68    3.6   0.2    3.6  3  TM_helix  Conserved TM helix


Domain annotation for each model (and alignments):
>> LRR_6  Leucine Rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.2   0.1      0.14   5.2e+02       7      24 .]     349     366 ..     346     366 .. 0.86
   2 ?    3.3   0.0      0.03   1.1e+02       5      15 ..     442     452 ..     441     454 .. 0.88
   3 !    9.2   0.0   0.00037       1.3       5      19 ..     484     498 ..     483     503 .. 0.91
   4 !    7.3   0.0    0.0015       5.4       4      19 ..     543     558 ..     543     563 .. 0.90
   5 !   16.5   0.4   1.7e-06    0.0061       5      24 .]     604     623 ..     603     623 .. 0.96
   6 ?    1.1   0.0      0.15   5.3e+02       6      22 ..     635     652 ..     632     654 .. 0.81
   7 !    9.1   0.0    0.0004       1.4       5      19 ..     663     677 ..     663     682 .. 0.91
   8 !   16.5   0.4   1.7e-06    0.0061       5      24 .]     723     742 ..     722     742 .. 0.96
   9 !    8.2   0.0   0.00079       2.8       5      23 ..     753     771 ..     750     772 .. 0.84
  10 ?    3.2   0.1     0.031   1.1e+02       5      16 ..     781     792 ..     781     793 .. 0.88
  11 ?   -2.7   0.0       2.5   8.9e+03      16      24 .]     807     815 ..     807     815 .. 0.87
  12 !   11.6   0.1   6.7e-05      0.24       5      24 .]     824     843 ..     823     843 .. 0.96
  13 !   12.2   0.0   4.1e-05      0.15       1      18 [.     848     865 ..     848     869 .. 0.90
  14 !    6.3   0.0    0.0032        12       5      19 ..     881     895 ..     880     900 .. 0.90
  15 ?   -2.3   0.0       1.8   6.5e+03      15      24 .]     921     930 ..     920     930 .. 0.91

  Alignments for each domain:
  == domain 1  score: 1.2 bits;  conditional E-value: 0.14
       LRR_6   7 eLdLsgNdIgDeGaeaLa 24 
                 eLdL+  +Ig eG++ La
  KOO21250.1 349 ELDLQKINIGVEGGMLLA 366
                 78888889*******997 PP

  == domain 2  score: 3.3 bits;  conditional E-value: 0.03
       LRR_6   5 LteLdLsgNdI 15 
                 Lt+ +LsgN++
  KOO21250.1 442 LTSINLSGNQM 452
                 9********96 PP

  == domain 3  score: 9.2 bits;  conditional E-value: 0.00037
       LRR_6   5 LteLdLsgNdIgDeG 19 
                 Lt++ L+gN++gDeG
  KOO21250.1 484 LTSVKLRGNELGDEG 498
                 89************9 PP

  == domain 4  score: 7.3 bits;  conditional E-value: 0.0015
       LRR_6   4 hLteLdLsgNdIgDeG 19 
                 +Lt+ +L+gN++g eG
  KOO21250.1 543 TLTSFNLRGNKLGEEG 558
                 8************999 PP

  == domain 5  score: 16.5 bits;  conditional E-value: 1.7e-06
       LRR_6   5 LteLdLsgNdIgDeGaeaLa 24 
                 Lt+L+Ls N + DeG++a +
  KOO21250.1 604 LTALNLSLNSLKDEGVSAVC 623
                 9****************987 PP

  == domain 6  score: 1.1 bits;  conditional E-value: 0.15
       LRR_6   6 teLdLsgNd.IgDeGaea 22 
                  +L+  +N+ +g +Ga a
  KOO21250.1 635 ASLNFEDNGiVGPVGANA 652
                 68*******999999966 PP

  == domain 7  score: 9.1 bits;  conditional E-value: 0.0004
       LRR_6   5 LteLdLsgNdIgDeG 19 
                 Lt++ L+gN++gDeG
  KOO21250.1 663 LTSVKLRGNELGDEG 677
                 89************9 PP

  == domain 8  score: 16.5 bits;  conditional E-value: 1.7e-06
       LRR_6   5 LteLdLsgNdIgDeGaeaLa 24 
                 Lt+L+Ls N + DeG++a +
  KOO21250.1 723 LTALNLSLNSLKDEGVSAVC 742
                 9****************987 PP

  == domain 9  score: 8.2 bits;  conditional E-value: 0.00079
       LRR_6   5 LteLdLsgNdIgDeGaeaL 23 
                 + +L+  +N+Ig +Ga a 
  KOO21250.1 753 IASLNFGSNCIGPVGANAV 771
                 568************9765 PP

  == domain 10  score: 3.2 bits;  conditional E-value: 0.031
       LRR_6   5 LteLdLsgNdIg 16 
                 L++ +LsgN++ 
  KOO21250.1 781 LKSINLSGNQLC 792
                 89********75 PP

  == domain 11  score: -2.7 bits;  conditional E-value: 2.5
       LRR_6  16 gDeGaeaLa 24 
                 + eG++a+a
  KOO21250.1 807 TAEGVTAIA 815
                 579****98 PP

  == domain 12  score: 11.6 bits;  conditional E-value: 6.7e-05
       LRR_6   5 LteLdLsgNdIgDeGaeaLa 24 
                 Lt+L+L++N++g eG +a++
  KOO21250.1 824 LTKLSLAHNNLGEEGTKAIC 843
                 9***************9998 PP

  == domain 13  score: 12.2 bits;  conditional E-value: 4.1e-05
       LRR_6   1 snthLteLdLsgNdIgDe 18 
                 +nt+L+eLd+++ dIg++
  KOO21250.1 848 QNTTLKELDIRDSDIGGS 865
                 69**************86 PP

  == domain 14  score: 6.3 bits;  conditional E-value: 0.0032
       LRR_6   5 LteLdLsgNdIgDeG 19 
                 Lt ++L+ N++gD+G
  KOO21250.1 881 LTNVELRRNHLGDKG 895
                 8999**********9 PP

  == domain 15  score: -2.3 bits;  conditional E-value: 1.8
       LRR_6  15 IgDeGaeaLa 24 
                 Ig +G++ +a
  KOO21250.1 921 IGPAGVKLIA 930
                 99*****997 PP

>> LRR_1  Leucine Rich Repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.1   0.0      0.26   9.4e+02       2      12 ..     442     452 ..     441     461 .. 0.86
   2 ?   -3.7   0.0         5   1.8e+04       2      14 ..     484     496 ..     484     500 .. 0.78
   3 ?    0.7   0.0      0.37   1.3e+03       2      13 ..     544     555 ..     543     572 .. 0.79
   4 ?   -0.1   0.0      0.68   2.4e+03       2      17 ..     604     619 ..     603     625 .. 0.76
   5 ?   -3.4   0.0         5   1.8e+04       2      14 ..     663     675 ..     663     681 .. 0.77
   6 ?    0.5   0.2      0.43   1.5e+03       2      18 ..     723     739 ..     722     770 .. 0.66
   7 ?    5.0   0.0     0.014        51       2      14 ..     781     793 ..     780     799 .. 0.86
   8 ?    0.3   0.0       0.5   1.8e+03       2      13 ..     824     835 ..     823     845 .. 0.81
   9 ?    0.9   0.0      0.32   1.2e+03       2      12 ..     852     862 ..     851     870 .. 0.83
  10 ?   -3.2   0.0         5   1.8e+04       4      15 ..     883     894 ..     881     899 .. 0.74

  Alignments for each domain:
  == domain 1  score: 1.1 bits;  conditional E-value: 0.26
       LRR_1   2 LrhLdLsnnpl 12 
                 L++++Ls+n+ 
  KOO21250.1 442 LTSINLSGNQM 452
                 89*******85 PP

  == domain 2  score: -3.7 bits;  conditional E-value: 5
       LRR_1   2 LrhLdLsnnpllg 14 
                 L++  L++n l++
  KOO21250.1 484 LTSVKLRGNELGD 496
                 6778899**9854 PP

  == domain 3  score: 0.7 bits;  conditional E-value: 0.37
       LRR_1   2 LrhLdLsnnpll 13 
                 L++ +L++n l+
  KOO21250.1 544 LTSFNLRGNKLG 555
                 8999*****993 PP

  == domain 4  score: -0.1 bits;  conditional E-value: 0.68
       LRR_1   2 LrhLdLsnnpllglpp 17 
                 L+ L+Ls n+l + + 
  KOO21250.1 604 LTALNLSLNSLKDEGV 619
                 889******9966555 PP

  == domain 5  score: -3.4 bits;  conditional E-value: 5
       LRR_1   2 LrhLdLsnnpllg 14 
                 L++  L++n l++
  KOO21250.1 663 LTSVKLRGNELGD 675
                 6778899**9965 PP

  == domain 6  score: 0.5 bits;  conditional E-value: 0.43
       LRR_1   2 LrhLdLsnnpllglppn 18 
                 L+ L+Ls n+l + + +
  KOO21250.1 723 LTALNLSLNSLKDEGVS 739
                 77788888888443333 PP

  == domain 7  score: 5.0 bits;  conditional E-value: 0.014
       LRR_1   2 LrhLdLsnnpllg 14 
                 L++++Ls+n+l g
  KOO21250.1 781 LKSINLSGNQLCG 793
                 9*********943 PP

  == domain 8  score: 0.3 bits;  conditional E-value: 0.5
       LRR_1   2 LrhLdLsnnpll 13 
                 L++L L +n+l+
  KOO21250.1 824 LTKLSLAHNNLG 835
                 899*******94 PP

  == domain 9  score: 0.9 bits;  conditional E-value: 0.32
       LRR_1   2 LrhLdLsnnpl 12 
                 L++Ld+++  +
  KOO21250.1 852 LKELDIRDSDI 862
                 9*****99887 PP

  == domain 10  score: -3.2 bits;  conditional E-value: 5
       LRR_1   4 hLdLsnnpllgl 15 
                    L++n+l+++
  KOO21250.1 883 NVELRRNHLGDK 894
                 56799**99776 PP

>> LRR_4  Leucine Rich repeats (2 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.5   0.0      0.12   4.4e+02      24      33 ..     441     450 ..     431     464 .. 0.76
   2 ?   -3.6   0.0       4.9   1.8e+04       3      15 ..     484     496 ..     483     499 .. 0.70
   3 ?   -0.7   0.0      0.61   2.2e+03       3      15 ..     544     556 ..     543     562 .. 0.78
   4 ?    0.8   0.0      0.21   7.4e+02       3      18 ..     604     619 ..     603     628 .. 0.77
   5 ?    0.9   0.2       0.2     7e+02       3      18 ..     723     738 ..     722     768 .. 0.80
   6 ?    2.0   0.2     0.089   3.2e+02      25      35 ..     781     790 ..     751     794 .. 0.79
   7 !   10.4   0.0    0.0002      0.71       3      32 ..     824     859 ..     823     866 .. 0.82

  Alignments for each domain:
  == domain 1  score: 1.5 bits;  conditional E-value: 0.12
                 T--EEE-.-S CS
       LRR_4  24 nLkeLdLsgN 33 
                  L++++LsgN
  KOO21250.1 441 GLTSINLSGN 450
                 4666666666 PP

  == domain 2  score: -3.6 bits;  conditional E-value: 4.9
                 --EEE--SS---E CS
       LRR_4   3 LevLdLsnNqltd 15 
                 L+++ L++N l d
  KOO21250.1 484 LTSVKLRGNELGD 496
                 7777788887776 PP

  == domain 3  score: -0.7 bits;  conditional E-value: 0.61
                 --EEE--SS---E CS
       LRR_4   3 LevLdLsnNqltd 15 
                 L++ +L++N+l +
  KOO21250.1 544 LTSFNLRGNKLGE 556
                 7888888888875 PP

  == domain 4  score: 0.8 bits;  conditional E-value: 0.21
                 --EEE--SS---E-S- CS
       LRR_4   3 LevLdLsnNqltdipl 18 
                 L+ L+Ls N l+d + 
  KOO21250.1 604 LTALNLSLNSLKDEGV 619
                 899****889999655 PP

  == domain 5  score: 0.9 bits;  conditional E-value: 0.2
                 --EEE--SS---E-S- CS
       LRR_4   3 LevLdLsnNqltdipl 18 
                 L+ L+Ls N l+d + 
  KOO21250.1 723 LTALNLSLNSLKDEGV 738
                 8999***889999665 PP

  == domain 6  score: 2.0 bits;  conditional E-value: 0.089
                 --EEE-.-S-- CS
       LRR_4  25 LkeLdLsgNnl 35 
                 Lk+++LsgN +
  KOO21250.1 781 LKSINLSGN-Q 790
                 777777777.3 PP

  == domain 7  score: 10.4 bits;  conditional E-value: 0.0002
                 --EEE--SS---E-S-......HHH-TT--EEE-.- CS
       LRR_4   3 LevLdLsnNqltdipl......leklpnLkeLdLsg 32 
                 L++L+L++N+l + +       le+++ LkeLd+ +
  KOO21250.1 824 LTKLSLAHNNLGEEGTkaiceaLEQNTTLKELDIRD 859
                 9***********9888998777669999*****943 PP

>> PCP  Peridinin-chlorophyll A binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.6   0.0     0.086   3.1e+02      69      93 ..     462     486 ..     457     489 .. 0.88
   2 ?   -0.8   0.0      0.49   1.7e+03      68     111 ..     504     548 ..     493     556 .. 0.84
   3 ?    2.0   0.0     0.068   2.4e+02      66     113 ..     562     610 ..     551     641 .. 0.78
   4 ?    2.4   0.1      0.05   1.8e+02      62     112 ..     677     728 ..     648     760 .. 0.76
   5 ?    4.3   0.0     0.013        48      71      95 ..     804     828 ..     799     858 .. 0.73
   6 ?   -2.2   0.0       1.4   4.9e+03      62     103 ..     895     937 ..     836     944 .. 0.68

  Alignments for each domain:
  == domain 1  score: 1.6 bits;  conditional E-value: 0.086
                 HHHHTTTTC---HHHHHHHHHHHHH CS
         PCP  69 AigsidakgvaskaDyaavnaAlgr 93 
                  +g+ +a+g++  aD  +vn Al+ 
  KOO21250.1 462 QLGTYTAEGITAIADALRVNGALTS 486
                 578999****************986 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 0.49
                 HHH.HHTTTTC---HHHHHHHHHHHHHHHHTS-HHHHHHGGGTST CS
         PCP  68 kAi.gsidakgvaskaDyaavnaAlgrviasvpkskvmdvynafa 111
                  Ai +++d+k ++  a  + +  A g++ia +  + v   +++f+
  KOO21250.1 504 AAIcANKDSKIMSLDASGENIGLAGGKLIAKALCTSVTGTLTSFN 548
                 68878888999999999*************998888888877775 PP

  == domain 3  score: 2.0 bits;  conditional E-value: 0.068
                 HHHHH.HHTTTTC---HHHHHHHHHHHHHHHHTS-HHHHHHGGGTSTTH CS
         PCP  66 HhkAi.gsidakgvaskaDyaavnaAlgrviasvpkskvmdvynafael 113
                    Ai gs+d+k ++  a  + +  A g++ia + ++ v   ++a++ +
  KOO21250.1 562 IFAAIcGSKDSKIMSLDASGENIGLAGGKLIAKALRTSVTGGLTALNLS 610
                 5678989999*****9999*************99988887766666544 PP

  == domain 4  score: 2.4 bits;  conditional E-value: 0.05
                 HHHHHHHHH.HHTTTTC---HHHHHHHHHHHHHHHHTS-HHHHHHGGGTSTT CS
         PCP  62 aveAHhkAi.gsidakgvaskaDyaavnaAlgrviasvpkskvmdvynafae 112
                 +  A   Ai gs+d+k ++  a  + +  A g++ia + ++ v   ++a++ 
  KOO21250.1 677 GWGAIFAAIcGSKDSKIMSLDASGENIGLAGGKLIAKALRTSVTGGLTALNL 728
                 55566789999*************************9998888776666654 PP

  == domain 5  score: 4.3 bits;  conditional E-value: 0.013
                 HHTTTTC---HHHHHHHHHHHHHHH CS
         PCP  71 gsidakgvaskaDyaavnaAlgrvi 95 
                 g+ +a+gv+  aD  +vn Al+++ 
  KOO21250.1 804 GTYTAEGVTAIADALRVNGALTKLS 828
                 6788******************973 PP

  == domain 6  score: -2.2 bits;  conditional E-value: 1.4
                 HHHHHHHHH.HHTTTTC---HHHHHHHHHHHHHHHHTS-HHHH CS
         PCP  62 aveAHhkAi.gsidakgvaskaDyaavnaAlgrviasvpkskv 103
                 +  A   Ai g++d+k ++  a  + +  A  ++ia + +s v
  KOO21250.1 895 GWGAIFAAIcGNKDSKIMSLDAAAESIGPAGVKLIAEALRSSV 937
                 4455666787888888888888888888888888887766665 PP

>> TM_helix  Conserved TM helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.6   0.0      0.16   5.6e+02      24      47 ..     526     549 ..     526     550 .. 0.87
   2 ?    3.6   0.2     0.019        68      24      47 ..     586     609 ..     586     610 .. 0.90
   3 ?    3.6   0.2     0.019        68      24      47 ..     705     728 ..     705     729 .. 0.90

  Alignments for each domain:
  == domain 1  score: 0.6 bits;  conditional E-value: 0.16
                 HHHHHHHHHHHHHHHHHHHHHHTS CS
    TM_helix  24 LlvGwiiAkfvsrlvtkllaktgi 47 
                 L+ G +iAk +   vt  l+++++
  KOO21250.1 526 LAGGKLIAKALCTSVTGTLTSFNL 549
                 56799***********99998875 PP

  == domain 2  score: 3.6 bits;  conditional E-value: 0.019
                 HHHHHHHHHHHHHHHHHHHHHHTS CS
    TM_helix  24 LlvGwiiAkfvsrlvtkllaktgi 47 
                 L+ G +iAk ++  vt  l+++++
  KOO21250.1 586 LAGGKLIAKALRTSVTGGLTALNL 609
                 56799***************9986 PP

  == domain 3  score: 3.6 bits;  conditional E-value: 0.019
                 HHHHHHHHHHHHHHHHHHHHHHTS CS
    TM_helix  24 LlvGwiiAkfvsrlvtkllaktgi 47 
                 L+ G +iAk ++  vt  l+++++
  KOO21250.1 705 LAGGKLIAKALRTSVTGGLTALNL 728
                 56799***************9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (947 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       362  (0.0201908); expected 358.6 (0.02)
Passed bias filter:                      290  (0.0161749); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.63u 0.25s 00:00:00.88 Elapsed: 00:00:00.39
# Mc/sec: 7361.15
//
Query:       KOO21251.1  [L=415]
Description: hypothetical protein Ctob_000508 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    9.3e-47  159.6   0.0    1.2e-46  159.2   0.0    1.1  1  Dus       Dihydrouridine synthase (Dus)
  ------ inclusion threshold ------
      0.048   12.7   0.0      0.094   11.7   0.0    1.4  1  FMN_dh    FMN-dependent dehydrogenase


Domain annotation for each model (and alignments):
>> Dus  Dihydrouridine synthase (Dus)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  159.2   0.0   1.4e-50   1.2e-46      50     231 ..      44     225 ..      24     278 .. 0.88

  Alignments for each domain:
  == domain 1  score: 159.2 bits;  conditional E-value: 1.4e-50
                 GGGTSCEEEEEE-S-HHHHHHHHHHHHHTT-SCEEEEESSTTEEETTEEEGGGGGGSHHHHHHHHHHHHCCSS..S-EEEEEESESSTTTC.HHHHHHH CS
         Dus  50 eeeetplavQlggsdpallaeaAklvadlgadeIdlNvGCPskkvtrggaGaaLlrkpdlvaqivkavvkave..iPvtvkirigiddeeenalelaki 146
                  ++e  +++Qlg+++   ++ aA+++a+ ++ +Id+N+GCP+k++ +gg+G+aLl +p+ + +i+++++++++  +P+t kir+      ++++elak 
  KOO21251.1  44 TPNE-RVVLQLGTASGPAALLAAQVAAA-DVRAIDINMGCPVKFSVQGGMGSALLSQPERIRDILTTLRRNLPasMPLTCKIRLLDA--TQETIELAKL 138
                 4445.79*******99999999999999.9******************************************9999***99999865..8889****** PP

                 HHHCT-SEEEEESSECCCTT-CG--CHHHHHHHHH-S..S-EEEESS--SHHHHHHHHHHH--SEEEESCHHCCSTTHHHHHHHHHH CS
         Dus 147 veaaGaqaltvHgRtraqnyegtadweaIkevkqavs..ipviaNGdIkdaedaqaileetGadgvmigrgalgnPwlfaestavkt 231
                 +e +G+ al+vH+R r ++ +  a+w++ + +++ ++  +pvi NGd++ +ed+ ++l+ tGad +m +rgal nP +f++s  +  
  KOO21251.1 139 IESCGVSALAVHARRRHDRPRHWAQWDQFAILRETLPrsLPVILNGDVFAPEDVPRALAITGADSLMLARGALWNPSIFRSSSLLVD 225
                 *******************************************************************************97544444 PP

>> FMN_dh  FMN-dependent dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   1.1e-05     0.094     261     306 ..     167     213 ..     124     217 .. 0.82

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 1.1e-05
                 HHHHHHHH..SS-EEEESS--SHHHHHHHHHT.T-SEEEESHHHHHH CS
      FMN_dh 261 LpeiveavggrievlvDgGirrGsDvlkAlal.GAdavllGRpflyg 306
                    ++e ++++++v++ g +   +Dv +Ala+ GAd  +l+R +l+ 
  KOO21251.1 167 FAILRETLPRSLPVILNGDVFAPEDVPRALAItGADSLMLARGALWN 213
                 55567888999********************55***********995 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (415 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       424  (0.0236488); expected 358.6 (0.02)
Passed bias filter:                      357  (0.0199119); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.49u 0.24s 00:00:00.73 Elapsed: 00:00:00.41
# Mc/sec: 3067.17
//
Query:       KOO21252.1  [L=67]
Description: hypothetical protein Ctob_000507 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (67 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       519  (0.0289475); expected 358.6 (0.02)
Passed bias filter:                      342  (0.0190752); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.25s 00:00:00.59 Elapsed: 00:00:00.39
# Mc/sec: 514.88
//
Query:       KOO21253.1  [L=208]
Description: hypothetical protein Ctob_000506, partial [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.6e-11   43.4   0.1    3.5e-11   43.0   0.1    1.1  1  BAH       BAH domain


Domain annotation for each model (and alignments):
>> BAH  BAH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.0   0.1   1.9e-15   3.5e-11       3     113 ..      13     128 ..      11     135 .. 0.88

  Alignments for each domain:
  == domain 1  score: 43.0 bits;  conditional E-value: 1.9e-15
                 EETTGEEEEEETTSTTEEEEEEEEEEEEETTST.CEEEEEEEEEEECGGGS.TTTTHCCCT.....TEEEEEEE.EEEEEGGGEEEEEEEEEHHHHCTE CS
         BAH   3 yavGdfVyfddtstdepyqirrIeeLkenakne.eaeatvlvdwflrpeet.ksalklrqk.....rElfltrq.seilplaairgkcrVvllsdleea 93 
                 y+v ++Vy+ +   +  + ++rIee+  +  ++ ++++ + v+wf+r ++   s + ++       rE++l +  ++ + +++  g c+Vv  +d++++
  KOO21253.1  13 YSVFEYVYLRPWP-NSEPWVARIEEIVASIGRSnKVQQSLSVRWFYRRRDLlPSGECEFPAcdneaREVYLVPGkLDQVEIKTLLGSCKVVCSTDVPDL 110
                 7888999999999.89999*******888887778999*************855444554466679******9879*********************** PP

                 CCHCHHCSTTEEEEEEEEET CS
         BAH  94 qnylpkklddtFycslvydp 113
                   yl+  +ddt+++++ yd 
  KOO21253.1 111 AAYLQ--EDDTYFYRYEYDL 128
                 ****9..***********96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (208 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       442  (0.0246528); expected 358.6 (0.02)
Passed bias filter:                      354  (0.0197445); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.26s 00:00:00.67 Elapsed: 00:00:00.42
# Mc/sec: 1504.44
//
Query:       KOO21254.1  [L=588]
Description: na-h exchanger [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.3e-55  188.7  35.8    1.7e-55  188.4  35.8    1.1  1  Na_H_Exchanger  Sodium/hydrogen exchanger family
  ------ inclusion threshold ------
       0.11   12.7   0.3       0.28   11.4   0.3    1.7  1  FG-GAP          FG-GAP repeat


Domain annotation for each model (and alignments):
>> Na_H_Exchanger  Sodium/hydrogen exchanger family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  188.4  35.8   1.9e-59   1.7e-55       5     379 ..      48     477 ..      45     479 .. 0.91

  Alignments for each domain:
  == domain 1  score: 188.4 bits;  conditional E-value: 1.9e-59
                     HHHHHHHHH....H.HHHTTSXHHHHHHHHHHHHTTTTTS................HHHCHCCHHHHCHHCCHHHHCTCGCCTGCCTHHHHHHHH CS
  Na_H_Exchanger   5 illallvgl....l.arrlklpeivgliiaGlllGpsglglieps...........eedlevlselglilllFlaGleldlrelrknlksillla 83 
                     i++++lvgl    + a+r  +p++v++i++G  lG++ +   e+s            +  e+++ ++l++++F+aG++l+++++++nl +il++a
      KOO21254.1  48 IVSYSLVGLigiaIwAERRHIPSSVAAIVVGSTLGLVMRLAGENSapktsaihlleYFNEEFFLYFLLPPIIFEAGFSLSRHHFFHNLATILIFA 142
                     4444444444668889**********************98333337888999999888888999999**************************** PP

                     HHHHHHHHHHHHHHHH.H...............HTXTTCHHHHHHHHHHHTSSXHHHHHHHC.CCCTSTCCCCCCHHHHHHHHHHHCCCCCHHHH CS
  Na_H_Exchanger  84 llgvlitvvliGlllyll...............lilgiplleallfgailsatdpvvvlailkeegrvperlgtlllgesvlnDavavvllavll 163
                     ++g+++t++liG ++ +                +    +  +a+lfga++satdpv++l+i+  +  v+  ++tl+ gesvlnDava+vl+ +l 
      KOO21254.1 143 VVGTILTMLLIGCAAQAAgaagwfrsgtadaldFS---NPKDAFLFGALISATDPVATLSIM-GAFNVEPLMYTLVAGESVLNDAVAIVLVRILD 233
                     **********9988887688888899999966555...99**********************.******************************** PP

                     HHTXXXXXTSSSTSXHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS..CTHHHHHHHHHHHHHHHHHHHHHTSXXXHHHHHHHHHHHHHHHHHHTT CS
  Na_H_Exchanger 164 alakeeaggetslllllliflvvavgglllglvigwllrlitrft..dddrelevllvlllallaallaellgvsgilgaflaGlvlseyefsnk 256
                     +l +e  +  ++ll +l  f+vv +g+ll+g+ i   ++l+++++  +++++le++l ll+ ++a+ +ae+l++sgil+ f++ + +++y +++ 
      KOO21254.1 234 ELGPEAFSSPSALLVGLYMFVVVSLGSLLTGITIAASSALLLKRVdlSHHASLELALLLLIGYAAYPTAEALHCSGILALFACAVFMGQYHVHT- 327
                     **9988899999999999**********************************************************************999999. PP

                     HHHH........HHHHHHHHHHHHHHHHHHHHSX...............HHHHHXXHHHHHHHHHHHHHHHTHHHHHHHHHTTTX........SS CS
  Na_H_Exchanger 257 lsek........lesfreglfnplfFvlvGlsld...............lkvlnnhlsvlilvllilvaillgrilavflllrll........gl 320
                     ls++        l++++  l+++++F+++Gl l                l+ ++++ s   +v++++v++ ++r+++v +l+ +          l
      KOO21254.1 328 LSAEtaaavglvLKALA-HLAETFVFMYMGLDLVakrgavddlfdedhgLAGVDESRSTRHFVAFAVVVVPAARAVVVPPLVCFAnlwrgrkrSL 421
                     77777899999999999.9***************99999877777776655555567777788888888889********99988******988* PP

                     XHHHHHHCCCCSS.BHHHHHHHHHHHHHHXHHHHTTSSTTTCSTSXHHHHHHHHHHHHH CS
  Na_H_Exchanger 321 slrealiigfgglqrgavalalaalgpalgllarelyallivvvlftvlvqGlslkpll 379
                     sl+e ++++f+gl rga+a+ala  + ++    r+l+a++++v++ft++v G+ ++p+l
      KOO21254.1 422 SLNETIFLVFAGL-RGAIAFALARNAASA--HGRTLIAATTAVIVFTTFVLGGLTRPML 477
                     *************.**********99999..99999*********************98 PP

>> FG-GAP  FG-GAP repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.3   3.1e-05      0.28       4      18 ..      20      34 ..      17      34 .. 0.85

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 3.1e-05
                SEEEESTSSSSS-EE CS
      FG-GAP  4 slavgDvNGDGyaDL 18
                + ++gDvNGDG +++
  KOO21254.1 20 QSTLGDVNGDGQDEV 34
                6789*******9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (588 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       652  (0.0363657); expected 358.6 (0.02)
Passed bias filter:                      293  (0.0163422); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.59u 0.29s 00:00:00.87 Elapsed: 00:00:00.46
# Mc/sec: 3838.99
//
Query:       KOO21255.1  [L=351]
Description: putative not transcription complex subunit vip2-like protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.4e-28   99.6   7.5    2.2e-28   99.0   7.5    1.2  1  NOT2_3_5  NOT2 / NOT3 / NOT5 family


Domain annotation for each model (and alignments):
>> NOT2_3_5  NOT2 / NOT3 / NOT5 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   99.0   7.5   1.2e-32   2.2e-28       2     119 ..     216     321 ..     215     324 .. 0.87

  Alignments for each domain:
  == domain 1  score: 99.0 bits;  conditional E-value: 1.2e-32
    NOT2_3_5   2 sllnspdsedaekprqyepklphptsisypqeplyeklesakklekldedtLFyiFYysqgtleqllAakeLkkrsWryhkelktWflreekeepkekt 100
                 ++++sp+++++++    e +lp++   +y q+p+   l+    ++k++++tLFyiFY +++++ q +Aa+eL++r+Wryhk+lk+Wf++     +++  
  KOO21255.1 216 ATFASPWADSPAQR-DPEYSLPQC---YYMQPPA---LK-TGHFSKFQLETLFYIFYNMPRDTLQAYAATELYNRGWRYHKDLKLWFTKA----SRQGA 302
                 68999**9999554.556699999...6666663...55.478***********************************************....57788 PP

    NOT2_3_5 101 eeyekgsYkyFDyetWlkr 119
                 +e+++g+Y+yFD ++W+k+
  KOO21255.1 303 DETQRGQYIYFDINEWKKK 321
                 999*********77**986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (351 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       284  (0.0158403); expected 358.6 (0.02)
Passed bias filter:                      205  (0.011434); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.23s 00:00:00.69 Elapsed: 00:00:00.39
# Mc/sec: 2694.27
//
Query:       KOO21256.1  [L=516]
Description: nitrate transporter [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.2e-19   69.1  21.0    5.5e-19   68.3  21.0    1.4  1  MFS_1     Major Facilitator Superfamily
     0.0026   16.4  12.6      0.057   12.0   4.1    2.3  2  MFS_2     MFS/sugar transport protein
  ------ inclusion threshold ------
       0.89    8.1   9.5        1.4    7.5   0.2    2.6  3  ATG22     Vacuole effluxer Atg22 like


Domain annotation for each model (and alignments):
>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   68.3  21.0   9.2e-23   5.5e-19       2     286 ..      71     366 ..      58     382 .. 0.76

  Alignments for each domain:
  == domain 1  score: 68.3 bits;  conditional E-value: 9.2e-23
       MFS_1   2 llaaflsalarsilgpalplalaedlgispseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllllfasslw.lllvlrvlqGlga 99 
                 ++a+f+s++a +++g+ +     e l +++ e+ l   l   g++++ l++G++ dr+G+r+++ + l++ + g ++l+++++ +  ++ +r+l Gl  
  KOO21256.1  71 FFATFFSCFAPAAIGSYIKRPAPEGLDLTAEELVLGGNLAVTGCILMRLVAGVMCDRMGARKTFAIFLAVGCPG-MILMMCATTPgHFIGARLLIGLSL 168
                 566666666666666666554446677778887777888889********************************.77776789999************8 PP

       MFS_1 100 galfpagaaliadwfpkeergraigllsagfslGailgpllggllasslg.........Wravfyilaivsllafvlfllllpeepperkrkspkeee. 188
                  a f  +++++++ f k+  g a++ +++  ++G  ++ l+ g l+  l          Wr++f++  ++ +l+++++++    ++ + k  ++   + 
  KOO21256.1 169 -ATFVPCQVWVTQFFDKKVVGGATSTAAGWGNAGGGFTLLIMGQLMLFLRdstgdislsWRVCFILPLVMHILSIIFIMCCRDLPDGSYKDLETSGAKq 266
                 .8888899***********************************55544445566********************9976666655555555554444422 PP

       MFS_1 189 ....kgtgpaplvpawkallkdpvlwillialllfffgfsg.lltllplylqevlglsglllaglllallalvgailallagrlsdr....lgrrrrll 278
                     k  g  +++      +++   w ++++ ++ +fg+ + +   l+ y+   +gl++  +ag l a ++l++++++ ++g lsd     +g r rl+
  KOO21256.1 267 kakgKLGGDVAIIG-----FTNVNAW-IMCMTYGLCFGIELtMNNRLTDYFENYFGLPN-EQAGPLGATFSLMNLFARSWGGLLSDWcaarWGLRGRLW 358
                 23222223333333.....5555557.444444443345445777777799*******5.***************************888866666666 PP

       MFS_1 279 lallllll 286
                  + +  ++
  KOO21256.1 359 AMWIMQVC 366
                 66555544 PP

>> MFS_2  MFS/sugar transport protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.0   4.1   9.5e-06     0.057     267     332 ..     109     172 ..      61     181 .. 0.90
   2 !    9.2   1.3   6.6e-05      0.39     144     289 ..     199     354 ..     189     381 .. 0.61

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 9.5e-06
       MFS_2 267 vvtisallgiplwqplakrlgkkntyllgalltivllvlvlllqpsnlllflvllviagfgvgvaa 332
                 +++++ +l+ +++ +++ r+g ++t+++++++  ++++l++ +  +   +f+ + +++g+++++++
  KOO21256.1 109 LAVTGCILMRLVAGVMCDRMGARKTFAIFLAVGCPGMILMMCA--TTPGHFIGARLLIGLSLATFV 172
                 5689999*********************************999..999999999999999988875 PP

  == domain 2  score: 9.2 bits;  conditional E-value: 6.6e-05
       MFS_2 144 vlggvlaailafllvlilgg.lkserkgylifaliialLmllgviivvlg.tkervem..rkkekteqkeklslleqlkev..frnraflillllflla 236
                 ++gg  + +++++l+l+l+  +++    +++  ++  ++ +l++i+++ +    + ++   + + ++qk k++l +++  +   +  a+++ ++++l++
  KOO21256.1 199 NAGGGFTLLIMGQLMLFLRDsTGDISLSWRVCFILPLVMHILSIIFIMCCrDLPDGSYkdLETSGAKQKAKGKLGGDVAIIgfTNVNAWIMCMTYGLCF 297
                 5666677777777777777755666667777777777777777665544303444444442333445666677777776652156789999******** PP

       MFS_2 237 alalgvlnglllYyltyvlgngsaasvfllvvtisal....lgiplwqplakrlgkk 289
                    l+++n l+ Y+ +y+   +++a  + +++ +++l     g +l  + a+r+g +
  KOO21256.1 298 GIELTMNNRLTDYFENYFGLPNEQAGPLGATFSLMNLfarsWGGLLSDWCAARWGLR 354
                 **************9998653333333333333333323335555555666666655 PP

>> ATG22  Vacuole effluxer Atg22 like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.5   0.5   0.00047       2.8      85     151 ..     115     181 ..     106     183 .. 0.87
   2 ?    7.5   0.2   0.00023       1.4     195     256 ..     192     256 ..     188     306 .. 0.76
   3 ?   -2.4   0.3      0.23   1.4e+03     359     394 ..     332     370 ..     307     377 .. 0.64

  Alignments for each domain:
  == domain 1  score: 6.5 bits;  conditional E-value: 0.00047
       ATG22  85 avvvislsglADygnyrknlLlafaligslstilfllvtpkkYllgavlyivsntcfgaslvllnsf 151
                 +++ ++ + ++D+   rk++ +++a+    + +++ + tp  ++ + +l+ +s+++f  ++v  + f
  KOO21256.1 115 ILMRLVAGVMCDRMGARKTFAIFLAVGCPGMILMMCATTPGHFIGARLLIGLSLATFVPCQVWVTQF 181
                 567788999*************99999999999999999*9**9999999*******9999987766 PP

  == domain 2  score: 7.5 bits;  conditional E-value: 0.00023
       ATG22 195 slGlaigylg.ailvqiisilivialgstatfslrlal.llvGlwWliftipaalllkkrp.gpp 256
                 s+++++g+ g +++++i++ l+++ ++st  +sl++ + ++  l+  i++i+ ++  ++ p g+ 
  KOO21256.1 192 STAAGWGNAGgGFTLLIMGQLMLFLRDSTGDISLSWRVcFILPLVMHILSIIFIMCCRDLPdGSY 256
                 78899999861577888999999999999999999976145689999*******99999995433 PP

  == domain 3  score: -2.4 bits;  conditional E-value: 0.23
       ATG22 359 lfeliplyG.llGii.lgkiGlkqp.wEfyvlavvyglv 394
                 +  ++  +G ll  +   + Gl+ + w +++++v  gl+
  KOO21256.1 332 MNLFARSWGgLLSDWcAARWGLRGRlWAMWIMQVCEGLM 370
                 344444554133333556666665447777777777765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (516 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       568  (0.0316805); expected 358.6 (0.02)
Passed bias filter:                      372  (0.0207485); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.54u 0.26s 00:00:00.80 Elapsed: 00:00:00.42
# Mc/sec: 3685.44
//
Query:       KOO21257.1  [L=833]
Description: nitrate reductase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.4e-59  199.3   0.0    6.8e-59  198.3   0.0    1.5  1  Oxidored_molyb  Oxidoreductase molybdopterin binding domain
    2.8e-46  157.0   0.0    5.4e-46  156.0   0.0    1.5  1  Mo-co_dimer     Mo-co oxidoreductase dimerisation domain
    6.6e-28   97.0   0.0    2.3e-27   95.2   0.0    1.9  2  FAD_binding_6   Oxidoreductase FAD-binding domain
      1e-25   90.5   0.0    3.1e-25   88.9   0.0    1.9  2  NAD_binding_1   Oxidoreductase NAD-binding domain
      5e-24   84.3   0.0      1e-23   83.2   0.0    1.6  1  Cyt-b5          Cytochrome b5-like Heme/Steroid binding domai
    0.00019   21.6   0.0     0.0038   17.4   0.0    2.2  2  NAD_binding_6   Ferric reductase NAD binding domain
  ------ inclusion threshold ------
      0.017   14.6   0.0      0.033   13.7   0.0    1.4  1  Toxin_10        Insecticidal Crystal Toxin, P42


Domain annotation for each model (and alignments):
>> Oxidored_molyb  Oxidoreductase molybdopterin binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  198.3   0.0   2.7e-62   6.8e-59       1     171 [.      77     251 ..      77     252 .. 0.96

  Alignments for each domain:
  == domain 1  score: 198.3 bits;  conditional E-value: 2.7e-62
                     SS----.GCCC-EEEEESTCSSEEEEEHHHHHHC-EEEEEEEEE-TTTTHHHHC.HH--SS----TTSEEEEEEEEEEHHHHHHHTTB-..ETT. CS
  Oxidored_molyb   1 hgavpkvdpekwrlevdglvekplslslddLkalpavevtatlqCagnrrkeln.kkkvkglqwgagavsnaeWtGvrlrdvLekagvk..kpea 92 
                     hgavp++++e++rl+v+glv kp+++++ddL +lp++e+++tl Cagnrrke n + ++ g++wga+ v+++ W+Gvrl dvL+++g+k  k+ a
      KOO21257.1  77 HGAVPNIKWEEHRLSVTGLVGKPTTFTMDDLLKLPSRELPITLVCAGNRRKEENlTAQTIGFNWGASGVGTSVWKGVRLCDVLKACGIKtpKEGA 171
                     89****************************************************777*******************************9777889 PP

                     .EEEEEEEEE-TCCTEEEEEEEHHHHCTT..T-EEEEEETTEE--CCCTTT-EEE-TTB-GGGSBTTEEEEEEESS---SH CS
  Oxidored_molyb  93 rhvvfegadeeleeskygasiplekaled..dvlLAyemngepLppdhGyPlRlvvpglvgarsvKwlkrievsdeesegy 171
                     +hv+f g ++ + +++yg+si   +a++   dvlLA+e+ng +L+pdhGyPlRl++pg++g+r++Kwl++i+v++ees+++
      KOO21257.1 172 NHVCFVGVEKMP-KGRYGTSITYFTAMDPacDVLLAWEQNGARLTPDHGYPLRLIIPGYIGGRMIKWLNEITVTTEESDNF 251
                     ********8766.**************43569**********************************************998 PP

>> Mo-co_dimer  Mo-co oxidoreductase dimerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  156.0   0.0   2.1e-49   5.4e-46       2     137 ..     280     411 ..     279     412 .. 0.95

  Alignments for each domain:
  == domain 1  score: 156.0 bits;  conditional E-value: 2.1e-49
                  ----S---EEEE-SS-SEEEE-S....EEEEEEEEEE-STT--EEEEEEESSTTSS-EE-EEESSSSS---..SSTTS-TTS-EEEEEEEEESS.... CS
  Mo-co_dimer   2 yaiydlnvnsvicspeheekvklkeaeetytikGyaysGgGrritrvevsldkGksWklaeieyeedkereakeesretafcwvfweldvevse..la 97 
                  y+i++ln+ns+i++p h e+v l++ ++ty i+Gy y+GgGr+++rvevs+d+GksW+l+e++++e ++++++      ++cwvf++l+v++s+    
   KOO21257.1 280 YIINELNINSAIAYPGHLEVVPLSKPDQTYPISGYCYTGGGRKVIRVEVSIDGGKSWTLSELTHPETPTEYGR------YWCWVFFKLEVPLSKiyEC 371
                  89******************************************************************99977......**************95445 PP

                  .E.EEEEEEEETT--B--SHHH--TT-------EEEEEEE CS
  Mo-co_dimer  98 kekeilvravDealnvqPeemiwnvlgmlnnawfrvkikk 137
                  ++ e+l+r++D a+n qPe+ +wnv+gm+nn++frvk+++
   KOO21257.1 372 ETPELLCRGWDAAMNRQPEALTWNVMGMMNNSYFRVKVHR 411
                  6779**********************************96 PP

>> FAD_binding_6  Oxidoreductase FAD-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.0       2.1   5.5e+03      63      84 ..     222     243 ..     217     246 .. 0.85
   2 !   95.2   0.0   8.9e-31   2.3e-27       3      97 ..     570     672 ..     568     674 .. 0.95

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 2.1
                    EEEEEE--TT-HHHHHHHCS-T CS
  FAD_binding_6  63 lellvkvypgGkmsqaLdelki 84 
                    l l++  y gG+m + L+e+ +
     KOO21257.1 222 LRLIIPGYIGGRMIKWLNEITV 243
                    5789999********9999876 PP

  == domain 2  score: 95.2 bits;  conditional E-value: 8.9e-31
                    EEEEEEECCTTEEEEEEEESTTTS-----TT-EEEEEEC.ETTCCEEEEEE.BSSTTECCEEEEEEE--.........TT-HHHHHHHCS-TT-EE CS
  FAD_binding_6   3 kltekeevsedtrifrfklpsekqklglpvGqhvflrlk.ikgeaviRsYtpissenekGelellvkvy.........pgGkmsqaLdelkigdtl 88 
                    +l+ k+++s+dtr+frf+lps++++lglpvGqh+f+r+k  +g +v+R+Ytp+      G++++++kvy          gGk++q+L+ lk gdt+
     KOO21257.1 570 PLEWKKTISHDTRVFRFQLPSKEHELGLPVGQHLFIRAKgPDGANVMRAYTPMG--CGAGYVDFVIKVYfanvhprfpDGGKLTQILEGLKEGDTI 663
                    68899**********************************999*********986..579************************************* PP

                    EEEEEE-SE CS
  FAD_binding_6  89 eikGPlGkf 97 
                    ++kGPlG++
     KOO21257.1 664 DVKGPLGEY 672
                    *******86 PP

>> NAD_binding_1  Oxidoreductase NAD-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.1       4.1   1.1e+04      89     104 ..     168     183 ..     160     185 .. 0.82
   2 !   88.9   0.0   1.2e-28   3.1e-25       1     109 []     709     817 ..     709     817 .. 0.95

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 4.1
                    SSTTEEEEEECSHHHH CS
  NAD_binding_1  89 kkeethvyvCGppgMi 104
                    k++  hv++ G ++M 
     KOO21257.1 168 KEGANHVCFVGVEKMP 183
                    567899******9996 PP

  == domain 2  score: 88.9 bits;  conditional E-value: 1.2e-28
                    EEEEGGGGHHHHHHHHHHHHHCTTCSEEEEEEEESSGCGSTTHHHHHHHHHHCTTEEEEEEE..ESSCTTTSSSEESSHHHHHHHHHHHHSSTTEE CS
  NAD_binding_1   1 miagGtGiaPvrsvlraileeakdktkvvlvyGnrteedllyreeleelakklpgrlkvvav..vsreeagweggkgrvqdalleellslkkeeth 94 
                    +iagG+Gi+Pv+++ +a+++++ ++ k+ ++++nrt +d+l+++ l+el +k p r+ v+++  v+ ee+ w+++ g+++++++e +l+ + e+t 
     KOO21257.1 709 FIAGGSGITPVLQTCHALVANKARNLKISILFANRTVDDILCKDLLDEL-AKDP-RVSVWYTldVQPEEQPWKYSIGFINQEMVEAHLPKPAEKTV 802
                    7********************999*************************.4444.58999999999***********************99***** PP

                    EEEECSHHHHHHHHH CS
  NAD_binding_1  95 vyvCGppgMikavrk 109
                    +++CGpp+Mi++++k
     KOO21257.1 803 IFMCGPPPMINFACK 817
                    ***********9986 PP

>> Cyt-b5  Cytochrome b5-like Heme/Steroid binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   83.2   0.0     4e-27     1e-23       1      74 []     467     538 ..     467     538 .. 0.97

  Alignments for each domain:
  == domain 1  score: 83.2 bits;  conditional E-value: 4e-27
                 EHHHHTTTECTTEEEEEETTEEEECTTTCCCSTTCSHHHHTTTTSBBHHHHHHTTGGCHHHHHHHHGGEEEEEC CS
      Cyt-b5   1 tleelskhngkndlwvairgkVYDvskflskhpGgesailkyaGkDateafksvvhsekdaekllkkylvGkla 74 
                 +le+++khn+k+d+w++++gkVYD +k+l  hpGge++il +aG+D+te+f++  hs+k a+kll++y++G+la
  KOO21257.1 467 SLEDVAKHNTKEDVWIVVKGKVYDATKYLPLHPGGEASILITAGQDCTEDFEAL-HSSK-AWKLLDEYYIGELA 538
                 589***************************************************.*999.8**********985 PP

>> NAD_binding_6  Ferric reductase NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.4   0.0   1.5e-06    0.0038       1      61 [.     704     759 ..     704     775 .. 0.90
   2 ?    1.8   0.0      0.09   2.3e+02     123     148 ..     787     812 ..     783     817 .. 0.80

  Alignments for each domain:
  == domain 1  score: 17.4 bits;  conditional E-value: 1.5e-06
                    xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  NAD_binding_6   1 yenvllvagGiGitpfisilkdllkkskkealktkkikliwvvressslewfkdvLnelee 61 
                    ++++ ++agG+Gitp++  +  l+++ +    ++ ki++ +++r  +++ ++kd+L+el++
     KOO21257.1 704 FDTIGFIAGGSGITPVLQTCHALVANKA----RNLKISILFANRTVDDI-LCKDLLDELAK 759
                    678899********************99....999************99.67889999876 PP

  == domain 2  score: 1.8 bits;  conditional E-value: 0.09
                    xxxxxxxxxxxxxxxxxxxxxxxxxx RF
  NAD_binding_6 123 evlkdiaskhknssvgvfvCGppklv 148
                    +++ +++  ++ +++ +f+CGpp ++
     KOO21257.1 787 QEMVEAHLPKPAEKTVIFMCGPPPMI 812
                    555666677889999********986 PP

>> Toxin_10  Insecticidal Crystal Toxin, P42
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.0   1.3e-05     0.033      94     146 ..     234     285 ..     209     294 .. 0.89

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 1.3e-05
    Toxin_10  94 svqyqrevkvttttsekieettertlereyeavggrvaeilWyreDrytlerl 146
                  +++ +e++vtt +s++  +  ++ +  e+ +     ae  Wy+ D y+++ l
  KOO21257.1 234 MIKWLNEITVTTEESDNFFHFNDNRVLPEHVTAEIANAEGWWYKPD-YIINEL 285
                 589*****************************************99.455555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (833 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       392  (0.021864); expected 358.6 (0.02)
Passed bias filter:                      379  (0.0211389); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.61u 0.26s 00:00:00.87 Elapsed: 00:00:00.41
# Mc/sec: 6133.31
//
Query:       KOO21258.1  [L=621]
Description: nitrite reductase-ferredoxin dependent [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    6.8e-52  175.2   0.2    2.6e-38  131.0   0.0    2.6  3  NIR_SIR       Nitrite and sulphite reductase 4Fe-4S domain
    4.4e-38  129.0   0.0    5.1e-18   64.7   0.0    2.5  2  NIR_SIR_ferr  Nitrite/Sulfite reductase ferredoxin-like half 
  ------ inclusion threshold ------
      0.095   12.7   0.0       0.21   11.6   0.0    1.5  1  FR47          FR47-like protein


Domain annotation for each model (and alignments):
>> NIR_SIR  Nitrite and sulphite reductase 4Fe-4S domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.0      0.55   3.3e+03     103     137 ..      76     108 ..      59     109 .. 0.66
   2 !  131.0   0.0   4.4e-42   2.6e-38       3     157 ..     193     357 ..     191     358 .. 0.92
   3 !   41.3   0.0   1.7e-14     1e-10       8     127 ..     468     593 ..     463     600 .. 0.84

  Alignments for each domain:
  == domain 1  score: -2.6 bits;  conditional E-value: 0.55
                 EEEEGGGHHHHHHHHHHHHHHHS-CSSGGG-SHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
     NIR_SIR 103 gfvpeeevlevveaivevyrdhgdrknrkkeRlky 137
                 +f++  e+ ++++a + +++    +kn   +Rlk+
  KOO21258.1  76 AFTDVYEIAKAIRAGTLTWE--EVEKNDMDQRLKW 108
                 55555677777777788888..7777777778876 PP

  == domain 2  score: 131.0 bits;  conditional E-value: 4.4e-42
                 SSCCCCCCSTCCCTBSS-SS-THHHHHHHH........HHHCTCCCCTSSSS-BEEEEESSTCSTSSGGGSSEEEEEEEETTCEE.EEEEEE--B-SSS CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx........xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxx RF
     NIR_SIR   3 anlrnvtlcpgaglceeallDttelakaie........delepeygetylPrKfKiavsgcpnncvaveanDiglvgvkkdekei.gfnilvGGglgrt 92 
                 +n+rn +++p ag+++ +l+Dt++++ a++            ++++  +lPrKf+ia+sg +++ ++ ++nDiglv+v ++e+   gfn+++GG ++++
  KOO21258.1 193 DNVRNMVGSPLAGIDPAELVDTRPYCDALNdwytidsaTGARGNPKWGNLPRKFNIAISGSRDDYAHTHINDIGLVPVAHKETGAmGFNVVLGGYMSIK 291
                 79****************************7777766655567778889****************************988776655************* PP

                 TC-TCEEEEEEEEEGG..GHHHHHHHHHHHHHHHS-CSSGGG-SHHHHHHHHHHHHHHHHHHHCCTC CS
                 xxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
     NIR_SIR  93 hgakktsarlgfvpee..evlevveaivevyrdhgdrknrkkeRlkylverlGvekFrekveeelgk 157
                 + a++ +++  ++p+e  + +++++ai++++rd+g r +r+k+Rl++lve++GvekFre+v  e+ k
  KOO21258.1 292 RVAASIPMD-LWLPAEveHSVQLCDAILRIFRDEGARGDRQKARLMWLVEEYGVEKFREAVLAEMAK 357
                 *********.7*****978******************************************888765 PP

  == domain 3  score: 41.3 bits;  conditional E-value: 1.7e-14
                 CCCSTCCCTBSS-SS-THHHHHHHHHHHCTCCCCTSSSS-BEEEEESSTCSTSSGGGSSEEEEEEEETTCEE.........EEEEEE--B-SSSTC-TC CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.........xxxxxxxxxxxxxxxxxx RF
     NIR_SIR   8 vtlcpgaglceeallDttelakaiedelepeygetylPrKfKiavsgcpnncvaveanDiglvgvkkdekei.........gfnilvGGglgrthgakk 97 
                 +++c+ga++c  al++t++ a a+ +   +  +  ++Pr ++i  +gcpn c++v++ Dig++g   ++ ++         g+ ++vGG++g++     
  KOO21258.1 468 TVSCTGAQFCGLALVETKNNADAVAR---KLEALVEVPRPLRIHWTGCPNSCGQVQVADIGIMGAPAKKFNEaegkdkavpGCDLFVGGKIGEHAFLSL 563
                 679*********************94...44466789******************************999999********************998877 PP

                 EEEEE..EEEEGGG.HHHHHHHHHHHHHHHS-C CS
                 xxxxx..xxxxxxx.xxxxxxxxxxxxxxxxxx RF
     NIR_SIR  98 tsarl..gfvpeee.vlevveaivevyrdhgdr 127
                 ++ +   +  ++ + v e+v+ iv  +   g++
  KOO21258.1 564 EPYKKgiPLDHD-DlVPELVKIIVSKFG--GRK 593
                 766643333333.448889999988877..544 PP

>> NIR_SIR_ferr  Nitrite/Sulfite reductase ferredoxin-like half domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.7   0.0   8.5e-22   5.1e-18       3      66 ..     116     180 ..     114     182 .. 0.92
   2 !   61.5   0.0   8.2e-21   4.9e-17      10      66 ..     394     450 ..     386     452 .. 0.90

  Alignments for each domain:
  == domain 1  score: 64.7 bits;  conditional E-value: 8.5e-22
  NIR_SIR_ferr   3 qkdgkgyymvrlrvpnGritaeqlraladiaekyg..sgeirlTtrQnlqlhgvpeedleeileeL 66 
                   +++++ + m+rlr+pnG++taeq+r  a+ +e yg  +g +++TtrQn+ql+gv  ed+++i++ L
    KOO21258.1 116 KRTPGRF-MMRLRTPNGIVTAEQMRFYAECVEPYGpeIGVVDITTRQNIQLRGVALEDADKIIDGL 180
                   7888777.***************************766************************9987 PP

  == domain 2  score: 61.5 bits;  conditional E-value: 8.2e-21
  NIR_SIR_ferr  10 ymvrlrvpnGritaeqlraladiaekygsgeirlTtrQnlqlhgvpeedleeileeL 66 
                   + v+++vp Gr++a++ r la++a++y+ ge+rlT +Qn++l++vp e+++++l+e 
    KOO21258.1 394 VRVGVHVPVGRLSADECRTLAKLADEYSAGELRLTVEQNIILPNVPVERVDALLAEP 450
                   469***************************************************986 PP

>> FR47  FR47-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   3.5e-05      0.21       3      58 ..     131     188 ..     130     196 .. 0.91

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 3.5e-05
                 EEEETTT--EEEEEEE-TTSSEEEE..EE-GGG-SSSHHHHHHHHHHHHHHHS-S-EE CS
        FR47   3 Glyrkelgelaawilrkdggelgal..qvlpehrrrGlgsrlvkalakeiaergktvl 58 
                 G++  e  + +a++++++g e+g +   ++++ + rG +   + +++ ++  r++t++
  KOO21258.1 131 GIVTAEQMRFYAECVEPYGPEIGVVdiTTRQNIQLRGVALEDADKIIDGLHVRNQTSF 188
                 999999****************986336899*********************999987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (621 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       369  (0.0205812); expected 358.6 (0.02)
Passed bias filter:                      353  (0.0196888); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.55u 0.24s 00:00:00.79 Elapsed: 00:00:00.41
# Mc/sec: 4522.79
//
Query:       KOO21259.1  [L=362]
Description: hypothetical protein Ctob_000500 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (362 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       270  (0.0150594); expected 358.6 (0.02)
Passed bias filter:                      260  (0.0145016); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.43u 0.23s 00:00:00.66 Elapsed: 00:00:00.38
# Mc/sec: 2874.19
//
Query:       KOO21260.1  [L=153]
Description: hypothetical protein Ctob_000510 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (153 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       328  (0.0182944); expected 358.6 (0.02)
Passed bias filter:                      200  (0.0111551); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.39u 0.23s 00:00:00.62 Elapsed: 00:00:00.41
# Mc/sec: 1119.90
//
Query:       KOO21261.1  [L=579]
Description: aminoglycoside phosphotransferase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.5e-13   50.8   0.0    3.2e-13   49.7   0.0    1.5  1  EcKinase  Ecdysteroid kinase
    7.4e-09   35.9   0.0    1.3e-08   35.1   0.0    1.5  1  APH       Phosphotransferase enzyme family
    1.1e-05   24.6   0.0    1.6e-05   23.9   0.0    1.2  1  DUF1679   Protein of unknown function (DUF1679)


Domain annotation for each model (and alignments):
>> EcKinase  Ecdysteroid kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.7   0.0   5.3e-17   3.2e-13      18     287 ..     212     485 ..     193     487 .. 0.72

  Alignments for each domain:
  == domain 1  score: 49.7 bits;  conditional E-value: 5.3e-17
    EcKinase  18 lkkdkskkekslivKtmpeeeekrellkslklfkkEiamYekvlPeleallreagdefklapkcykae..eeeeeevlvleDLk...ekgyknadRlkg 111
                  k++     ++l++K  p    + ++++ +++f +E+ +Y++   e   l r +     l++ + k +    +++ ++++e  +   e+  +  +R  g
  KOO21261.1 212 AKGAAPRLARHLVAKFSPP---DLSAVELAQVFGTEAHFYNDTSVEAGGLNRPE----ALYVGYCKGSgcCGKRQYCIIMESAAgtrEAPTVCYKRVDG 303
                 4445555568888888884...44556666799999999999999999888877....45555555554433334799999865111444555677777 PP

    EcKinase 112 ld.lehlklvlkkLAkfHAaSlalkeekpevfkelkkglleedyvssalk....eafeelleellkaalealreelpelekea.......ekleklken 198
                  +   h++l+++ LA+fHA    +++ + +v+k++ + +     + +  +    +a+  +++++lka+ + + ++ p+++          + + +l++ 
  KOO21261.1 304 CNsPHHMRLAMRSLARFHAR--WWQHPQASVLKHYSHPFTAGGPLPKFPSciaiTAWMLMFKNGLKALPHCF-STHPKYDGVPkfaseyaQFIMELRPV 399
                 762579*************6..56666668888888655544444443330000445566777777777777.44455543336777666777788888 PP

    EcKinase 199 lferllelveekeeefnvlnHGDlwvnNimfkydeegepedvilvDFQlsrygSpalDLlyflytsteeelrkekfdellriYhesLve 287
                 l +r l+ v+e   e  +l+HGD ++ N+ f+ + eg    ++ +DF l  +g p  D++ ++   +  e r+e+   l+r Yhe+L e
  KOO21261.1 400 LRRRRLAAVREMFREPLTLVHGDAHLENVFFSPEYEG---GCTWIDFGLTMLGQPLGDVSTIIAGGMPVEARREHEHVLVRCYHEALLE 485
                 88888888889999*******************9998...9*********************************************976 PP

>> APH  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.1   0.0   2.2e-12   1.3e-08     138     225 ..     386     474 ..     220     486 .. 0.76

  Alignments for each domain:
  == domain 1  score: 35.1 bits;  conditional E-value: 2.2e-12
                 GCCTCC....HHHHHHHHHHHHHHHH--S..SS-EEEE-SS-SGGGEEEC..TTEEEEE---TT-EEEECCHHHHCCHHHCSCHCCCHCHHHHH CS
         APH 138 aselld....lleeleeqvlaalaallpg..elptvllHgDlhpgNllvdpddgrvtGviDfedaglgpplyDlavllrswtseldpeflaall 225
                 ase+ +    l+      ++++++a ++    +p +l+HgD h+ N+ + p+     + iDf++++lg pl D+ + + + +++  ++  ++ +
  KOO21261.1 386 ASEYAQfimeLRPV----LRRRRLAAVREmfREPLTLVHGDAHLENVFFSPEYEGGCTWIDFGLTMLGQPLGDVSTII-AGGMPVEARREHEHV 474
                 44444422222223....444555555556779*****************777777799*******************.667777766665554 PP

>> DUF1679  Protein of unknown function (DUF1679)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.9   0.0   2.7e-09   1.6e-05     268     370 ..     416     513 ..     380     543 .. 0.83

  Alignments for each domain:
  == domain 1  score: 23.9 bits;  conditional E-value: 2.7e-09
     DUF1679 268 kvlvhgDlwsaNiLfseeeegklklkkviDyQlvslgnpaeDlvrlllscLsgedRrarkeelLeqyyetflkaledngeepytleqLkd..sYklyfp 364
                   lvhgD    N++fs e eg ++    iD+ l  lg+p  D++ ++++ +  e Rr++++ l  +y+e +l+       + y++e   +  +Y+++ p
  KOO21261.1 416 LTLVHGDAHLENVFFSPEYEGGCT---WIDFGLTMLGQPLGDVSTIIAGGMPVEARREHEHVLVRCYHEALLEFG----VTGYDFERCWQdyTYQIIKP 507
                 579*****************9998...5******************************************99876....34466666543114555555 PP

     DUF1679 365 lmalll 370
                    ll+
  KOO21261.1 508 FFQLLI 513
                 555544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (579 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       360  (0.0200792); expected 358.6 (0.02)
Passed bias filter:                      283  (0.0157845); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.58u 0.25s 00:00:00.83 Elapsed: 00:00:00.44
# Mc/sec: 3989.55
//
Query:       KOO21262.1  [L=545]
Description: hypothetical protein Ctob_000499 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
      2e-05   24.8   0.6    4.7e-05   23.6   0.6    1.6  1  zf-met          Zinc-finger of C2H2 type
     0.0012   18.6   3.1     0.0028   17.3   3.1    1.7  1  UVR             UvrB/uvrC motif
     0.0072   16.1   0.0      0.011   15.4   0.0    1.3  1  DNA_pol_A_exo1  3'-5' exonuclease
  ------ inclusion threshold ------
      0.034   15.0   0.9          4    8.5   0.2    2.6  2  zf-C2H2_4       C2H2-type zinc finger
      0.045   14.1   1.0       0.09   13.1   0.2    1.8  2  zf-C2H2_jaz     Zinc-finger double-stranded RNA-binding
      0.077   12.8   1.6        1.1    9.1   0.1    2.3  2  zf-C2H2_11      zinc-finger C2H2-type
       0.13   12.1   0.0       0.39   10.5   0.0    1.7  2  DUF3449         Domain of unknown function (DUF3449)
       0.15   11.7   0.1       0.99    9.0   0.0    1.9  2  LUC7            LUC7 N_terminus
        0.4   11.2   2.1         14    6.4   0.7    2.4  2  zf-C2H2         Zinc finger, C2H2 type


Domain annotation for each model (and alignments):
>> zf-met  Zinc-finger of C2H2 type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.6   0.6   2.3e-08   4.7e-05       3      25 .]     420     442 ..     419     442 .. 0.99

  Alignments for each domain:
  == domain 1  score: 23.6 bits;  conditional E-value: 2.3e-08
      zf-met   3 CelCnvtfnsesqlksHlqGKkH 25 
                 Ce+C v f++ +ql+ HlqGK+H
  KOO21262.1 420 CEVCGVCFSGTKQLDEHLQGKRH 442
                 *********************** PP

>> UVR  UvrB/uvrC motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   3.1   1.4e-06    0.0028       4      35 ..     130     161 ..     128     162 .. 0.90

  Alignments for each domain:
  == domain 1  score: 17.3 bits;  conditional E-value: 1.4e-06
         UVR   4 ikeLeeemeeAaenedFEkAAklRDqinalkk 35 
                 + e ++++e+A+++ed+ kAA+l  qi++lk+
  KOO21262.1 130 LAEFQAALERAVAAEDYAKAAELQPQIKQLKA 161
                 6677899***********************96 PP

>> DNA_pol_A_exo1  3'-5' exonuclease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.0   5.7e-06     0.011     101     175 ..     215     298 ..     201     299 .. 0.86

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 5.7e-06
                     SSEEEHHHHHHHTTHSTTSSHHHHHHHHHS.B---GHCCTTSSTTT..........SSS-HHHHHHHHHHHHHTHHHHHHHHHHHH CS
  DNA_pol_A_exo1 101 enlfdtmlaayvldyershsLdsLaekylg.dleldkeeqiakwqk..........arplleeqllYAaeDadvllrlfkkLtkel 175
                     ++ +d +l  + l y+   +L+ La+ y+  +++  + e++++  +          + pl+  + +YAa+D++    ++++L+  l
      KOO21262.1 215 PPAADKQLVDRGLPYPT--GLSRLAATYCPrEVAAPVAELKERFGAlfdaghspfrTLPLSAAAASYAAADVWHIWLVYEALWTGL 298
                     55556666666666666..**************************9************************************9766 PP

>> zf-C2H2_4  C2H2-type zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.3   0.0     0.047        94       1      19 [.      90     108 ..      90     111 .. 0.82
   2 ?    8.5   0.2     0.002         4       3      21 ..     420     438 ..     419     440 .. 0.93

  Alignments for each domain:
  == domain 1  score: 4.3 bits;  conditional E-value: 0.047
   zf-C2H2_4   1 fkCpiCgksFsskkaLlrH 19 
                 fkC  Cg+ F s+ a   H
  KOO21262.1  90 FKCADCGELFLSRGARVAH 108
                 89********999874446 PP

  == domain 2  score: 8.5 bits;  conditional E-value: 0.002
   zf-C2H2_4   3 CpiCgksFsskkaLlrHlk 21 
                 C++Cg  Fs  k+L  Hl+
  KOO21262.1 420 CEVCGVCFSGTKQLDEHLQ 438
                 *****************86 PP

>> zf-C2H2_jaz  Zinc-finger double-stranded RNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.0       1.7   3.4e+03       1      20 [.      89     108 ..      89     109 .. 0.75
   2 ?   13.1   0.2   4.5e-05      0.09       4      26 ..     420     442 ..     420     443 .. 0.98

  Alignments for each domain:
  == domain 1  score: -1.5 bits;  conditional E-value: 1.7
                  ECBBTTTTBBBSSHHHHHCC CS
  zf-C2H2_jaz   1 qfYCvlCdKyFksenaldnH 20 
                  qf C  C   F s  a  +H
   KOO21262.1  89 QFKCADCGELFLSRGARVAH 108
                  89**9998777776666666 PP

  == domain 2  score: 13.1 bits;  conditional E-value: 4.5e-05
                  BTTTTBBBSSHHHHHCCTTSHHH CS
  zf-C2H2_jaz   4 CvlCdKyFksenaldnHlkSKkH 26 
                  C++C   F+  ++ld+Hl +K+H
   KOO21262.1 420 CEVCGVCFSGTKQLDEHLQGKRH 442
                  9********************** PP

>> zf-C2H2_11  zinc-finger C2H2-type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.5   0.1     0.062   1.2e+02       4      17 ..      89     102 ..      86     105 .. 0.77
   2 ?    9.1   0.1   0.00056       1.1       7      24 ..     420     437 ..     416     438 .. 0.86

  Alignments for each domain:
  == domain 1  score: 2.5 bits;  conditional E-value: 0.062
  zf-C2H2_11   4 tcqCleCGlcftSq 17 
                  ++C +CG  f S 
  KOO21262.1  89 QFKCADCGELFLSR 102
                 579*****888775 PP

  == domain 2  score: 9.1 bits;  conditional E-value: 0.00056
  zf-C2H2_11   7 CleCGlcftSqlsLsRHl 24 
                 C  CG+cf+    L  Hl
  KOO21262.1 420 CEVCGVCFSGTKQLDEHL 437
                 999******999888887 PP

>> DUF3449  Domain of unknown function (DUF3449)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.0       2.7   5.3e+03      80      97 ..      80      97 ..      75     102 .. 0.79
   2 ?   10.5   0.0    0.0002      0.39      92     117 ..     420     444 ..     418     460 .. 0.88

  Alignments for each domain:
  == domain 1  score: -3.0 bits;  conditional E-value: 2.7
                XXXXXXXXXXXXXXXXXX CS
     DUF3449 80 LykLhgLgkeykCeiCgn 97
                L  L   g+++kC  Cg+
  KOO21262.1 80 LAALTANGTQFKCADCGE 97
                6667777899******97 PP

  == domain 2  score: 10.5 bits;  conditional E-value: 0.0002
                 XXXXXXXXXXXXXXXXXXXXXXXXXX CS
     DUF3449  92 CeiCgnavYkGrkaFekHFseerHae 117
                 Ce+Cg + + G k+ ++H + +rHa 
  KOO21262.1 420 CEVCG-VCFSGTKQLDEHLQGKRHAI 444
                 ****9.78****************85 PP

>> LUC7  LUC7 N_terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.4   0.0      0.22   4.3e+02     120     173 ..     143     168 ..     126     223 .. 0.62
   2 ?    9.0   0.0    0.0005      0.99     179     221 ..     353     443 ..     307     451 .. 0.64

  Alignments for each domain:
  == domain 1  score: 0.4 bits;  conditional E-value: 0.22
                 X....XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
        LUC7 120 akakkqeqlkeleekiekllaeaeelgeeGkVdeaqklmkeveelkeekeeleq 173
                 a  +  ++ +el+ +i++l a +e ++                          +
  KOO21262.1 143 A--EDYAKAAELQPQIKQLKATIEAAA--------------------------A 168
                 2..233333333333333333333332..........................2 PP

  == domain 2  score: 9.0 bits;  conditional E-value: 0.0005
                 .....................................................XXXXXXXXXXXXXX....XXXXXXXXXXXXXXXXXXXXXXXXXXX CS
        LUC7 179 a...................................................aneeseasqekkmkv....CeiCGaflivgDaqqRiedHlmGKqHl 221
                 a                                                         +s+ kk +v    Ce+CG   +     + +++Hl+GK H 
  KOO21262.1 353 AaanaaanaaantaasaalaaavsdgdaaaaraasapspavgvgavvgavgaD----GQSTRKKRQVsgpgCEVCGVCFS---GTKQLDEHLQGKRHA 443
                 23444445555555555555666666666666666666666666666654332....23333333333344*****7665...5688**********6 PP

>> zf-C2H2  Zinc finger, C2H2 type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.9   0.0     0.043        86       1      16 [.      90     105 ..      90     111 .. 0.72
   2 ?    6.4   0.7     0.007        14       3      21 ..     420     438 ..     420     442 .. 0.90

  Alignments for each domain:
  == domain 1  score: 3.9 bits;  conditional E-value: 0.043
                 EEETTTTEEESSHHHH CS
     zf-C2H2   1 ykCpdCgksFkrksnL 16 
                 +kC dCg+ F ++   
  KOO21262.1  90 FKCADCGELFLSRGAR 105
                 8******877555555 PP

  == domain 2  score: 6.4 bits;  conditional E-value: 0.007
                 ETTTTEEESSHHHHHHHHH CS
     zf-C2H2   3 CpdCgksFkrksnLkrHir 21 
                 C++Cg +F+   +L  H++
  KOO21262.1 420 CEVCGVCFSGTKQLDEHLQ 438
                 9***************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (545 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1060  (0.0591221); expected 358.6 (0.02)
Passed bias filter:                      439  (0.0244855); expected 358.6 (0.02)
Passed Vit filter:                        69  (0.00384851); expected 17.9 (0.001)
Passed Fwd filter:                        13  (0.000725082); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.59u 0.25s 00:00:00.84 Elapsed: 00:00:00.43
# Mc/sec: 3837.35
//
Query:       KOO21263.1  [L=308]
Description: nitrite transporter nar1 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    8.3e-71  238.1  26.6      1e-70  237.8  26.6    1.1  1  Form_Nir_trans  Formate/nitrite transporter


Domain annotation for each model (and alignments):
>> Form_Nir_trans  Formate/nitrite transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  237.8  26.6   5.6e-75     1e-70       3     235 ..      57     298 ..      55     299 .. 0.95

  Alignments for each domain:
  == domain 1  score: 237.8 bits;  conditional E-value: 5.6e-75
                     HHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHCCT...TCHHHHHHHHHC.CCHHHHHHHHHT---CCCCCCHHHHHHCTTSS CS
  Form_Nir_trans   3 vekvvaagvkkaklsldklfllgilAGafigfgvllalvvaaalaes...npglakllgglv.FpvGlilvvllgaeLfTgntllltlavlkkkv 93 
                     ++++vaag+kka++++dk+f lgil+Ga igfg++l+l +++a++     npgl+k+++g++  p+Gl++ +l g+eLfTgnt+l+t+a+l++k+
      KOO21263.1  57 FNGAVAAGEKKANMPADKIFHLGILSGAHIGFGAFLMLSIGGACPGLaatNPGLQKIVLGAFgLPFGLMMTLLSGGELFTGNTALVTMALLEGKA 151
                     67899**************************************9776999******9988777******************************** PP

                     SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTGG..HHHHHHHHHCCCSS-HHHHHHHHHHHHHHHHHHHHHHCC-SSHHHHHHHHHHHHHHHHH CS
  Form_Nir_trans  94 slkkllknwlvvllgNliGsllvalllvvlsgll..aekllsiaeaklslsfleaflrGilCNwlVclavwlalaakdvigkilaiflpifafva 186
                     ++++l+k w ++++gN++Gs+l+a +lv+++++l  + + +++++ak+sl+f++af+rG+lCNwlV++av+la  akd++gk++ i+++i afva
      KOO21263.1 152 TMGQLIKSWSASFAGNFVGSVLLA-VLVFYGNTLsgGGASIAVSAAKTSLTFTQAFVRGVLCNWLVTMAVYLASFAKDTAGKMVPIWFCISAFVA 245
                     ***********************9.55556665447999999999************************************************** PP

                     CT---HHHHHHHHHHHHHH....SHHHHHHHCHHHHHHHHHHHHHCCHHHHHH CS
  Form_Nir_trans 187 sgfeHsvanmfliplglll....tvadfilknlipvtlGNivGGallvgllyl 235
                     +g+eHs+anmf+iplg++     ++ +f+lknl+pvtlGN+ GGa++v+l++ 
      KOO21263.1 246 LGLEHSIANMFIIPLGIFSgasvSWPTFLLKNLLPVTLGNTFGGAVCVALAFC 298
                     *****************9899999*************************9875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (308 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       515  (0.0287244); expected 358.6 (0.02)
Passed bias filter:                      229  (0.0127726); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.22s 00:00:00.66 Elapsed: 00:00:00.39
# Mc/sec: 2348.38
//
Query:       KOO21264.1  [L=570]
Description: hypothetical protein Ctob_000495 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.2e-05   24.5   0.1    5.2e-05   23.8   0.1    1.3  1  Metallophos      Calcineurin-like phosphoesterase
     0.0065   17.2   0.2      0.023   15.4   0.1    2.1  2  Methyltransf_25  Methyltransferase domain
  ------ inclusion threshold ------
      0.023   14.5   0.0      0.048   13.5   0.0    1.6  1  Methyltransf_23  Methyltransferase domain
      0.028   14.6   0.3       0.19   11.9   0.1    2.1  2  Metallophos_2    Calcineurin-like phosphoesterase superfamily
      0.054   14.1   0.0        4.2    8.1   0.0    2.3  2  Bin3             Bicoid-interacting protein 3 (Bin3)
       0.13   12.0   0.1       0.67    9.7   0.1    2.0  2  Methyltransf_31  Methyltransferase domain
       0.15   12.5   0.4       0.37   11.3   0.4    1.7  1  PhoR             Phosphate regulon sensor protein PhoR


Domain annotation for each model (and alignments):
>> Metallophos  Calcineurin-like phosphoesterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.8   0.1     2e-08   5.2e-05      25     203 ..      31     235 ..      24     236 .. 0.58

  Alignments for each domain:
  == domain 1  score: 23.8 bits;  conditional E-value: 2e-08
                  HHHHHHHTTESEEEEEST....SSSSS........HHHHHHHHHHHHHHHH........TSEEEEEC-TTSCHHHHHHHHHHHHHHH.......HHHH CS
  Metallophos  25 lddllreekpdlvllaGD....lvdrg........dlekellellaalvky........pipvylllGNHegfeeellnkygylgif.......sepw 95 
                  +++++++  +++++  GD     +d++         ++  l ++++               ++++++GN +   +++  k++++++        +   
   KOO21264.1  31 YSKAAANATVYFFV--GDsqahSFDGSpskadnakAVNLTLTRMMS----DvlkrfggsAANIVWTAGNND-GPHDSIFKQQDNATQawagallA--- 118
                  44445556899999..**9888777778987555544443444444....3444488889999********.34455555555554435433332... PP

                  EHH.................HCEEETSEEEEEETTEEEEEEEESECEEE.THHHHHHHHHHHSCHHHHCC......HHHHHHHHHHTTCSEEEEEESS CS
  Metallophos  96 rsd.................aevfnnlplaslgsgslkvlllhGgspel.lvsldklgslnleleapepg......dewlkdlekrekadwvivlgHs 169
                                      +evf+   ++ l++   +   l++    l + s   + + nl  ++p ++       +w ++    ++a +v+vlgH+
   KOO21264.1 119 --AnvvtddlgvkytssfseTEVFSQTDVFKLVGF--YMKALPA----LtNRSYAIVLNTNLGGDNPAQQsyleqsLDWVHR--THGDAGIVYVLGHH 206
                  ..134444566666555555555555555554444..3333333....2222222233333333333333445567889999..999*********** PP

                  ESSCSSSCSCCHHHHHHHHHHTTESEEEEESSSS CS
  Metallophos 170 plyrgsgylfgdealedllkkygvdlvisGHtHv 203
                  p   + g    +ea++     + v+ v++GH Hv
   KOO21264.1 207 PEVMSVGTDVVPEAYR-----PMVKGVFCGHNHV 235
                  ***5555555555555.....55**********7 PP

>> Methyltransf_25  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   0.0       6.7   1.7e+04      46      61 ..      38      53 ..      27      68 .. 0.59
   2 !   15.4   0.1   9.1e-06     0.023       1      97 []     386     493 ..     386     493 .. 0.61

  Alignments for each domain:
  == domain 1  score: -3.4 bits;  conditional E-value: 6.7
                     TTEEEEESBCCGBSSS CS
  Methyltransf_25 46 lnvefvqgdaedlpfe 61
                     + v f +gd ++ +f+
       KOO21264.1 38 ATVYFFVGDSQAHSFD 53
                     3566666666555543 PP

  == domain 2  score: 15.4 bits;  conditional E-value: 9.1e-06
                      EEEET-TTSHHHHHHHCTS..TSSEEEEEES...SHHHHHHHHHHHHH...TTTTEEEEESBCCGBSS..STTTEEEEEEESTGGGSSHHHHHH CS
  Methyltransf_25   1 vLdlGcGtGrltlalakrl..gkakvtgvDi...seemleaareraee...eglnvefvqgdaedlpf..edgsfDlvvssgalhhlsdedlek 84 
                      vLd+GcG G+ +++l  +l   +++++++++   ++++ +++r+ + +   e++ +e   + +  l +    +   l++ss ++hhl+ +++++
       KOO21264.1 386 VLDFGCGDGEALRELGSHLhaDASQLHCIEVyelNDTAGQYVRHVLPDpkdESAYCEAAAALVAPLREasTGEGLALIFSSVTFHHLPTSRMRA 479
                      9*****************9643889999877222444445555444333223333333333333333222556899999987799999888776 PP

                      .HHHHHHHHEEEEE CS
  Methyltransf_25  85 .alkeiarvLkpgG 97 
                       +++ ia +L p G
       KOO21264.1 480 cVYALIAAALGPRG 493
                      24566666666665 PP

>> Methyltransf_23  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.0   1.9e-05     0.048      20     120 ..     380     500 ..     352     546 .. 0.57

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 1.9e-05
  Methyltransf_23  20 lraggrvLdiGcGtGillevl.......rengfsvtgvDlspeaveiae.........kakkaqkdqfdeqeaaepqg................ 81 
                      + ++  vLd+GcG+G+ l++l       + + + +++++l++ a + ++         +                  +                
       KOO21264.1 380 QTRSCVVLDFGCGDGEALRELgshlhadASQLHCIEVYELNDTAGQYVRhvlpdpkdeS------------------Ayceaaaalvaplreas 455
                      455568*************9954333222244467777777655444432222211110..................01112222333333333 PP

  Methyltransf_23  82 ...kfdlIvlrevlehvpdpp...ellrqiatllkpgGylllsep 120
                            lI ++ +++h+p       + + ia+ l p G ++l+++
       KOO21264.1 456 tgeGLALIFSSVTFHHLPTSRmraCVYALIAAALGPRGAFVLHYS 500
                      334666666666666666432222334445555666666666665 PP

>> Metallophos_2  Calcineurin-like phosphoesterase superfamily domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.3   0.0      0.28   7.1e+02      43      82 ..      71     117 ..      24     145 .. 0.61
   2 ?   11.9   0.1   7.5e-05      0.19      94     164 ..     200     268 ..     161     269 .. 0.69

  Alignments for each domain:
  == domain 1  score: 0.3 bits;  conditional E-value: 0.28
  Metallophos_2  43 evleellela.....pvlaVrGNnD..eev.veedvlreaaelgtdlp 82 
                     ++ ++l+++      ++   GNnD    + + ++  ++ + ++++l 
     KOO21264.1  71 RMMSDVLKRFggsaaNIVWTAGNNDgpH-DsIFKQQDNATQAWAGALL 117
                    3555666655666678888899999642.2466666666666666664 PP

  == domain 2  score: 11.9 bits;  conditional E-value: 7.5e-05
  Metallophos_2  94 vlliHgdpl..gvkdalaellkeaeegsdvvvcGHtHvpevekeggvlvvnPGsvgeprdgdpetyaildtde 164
                    v+++ ++p   +v  ++ + +++    ++ v+cGH Hv+  +     l+ n G ++  +  +p  ++i ++d+
     KOO21264.1 200 VYVLGHHPEvmSVGTDVVPEAYR--PMVKGVFCGHNHVAMSTSS--KLFTNVGGLTFSSVPRPHNFLIAQVDA 268
                    33333332357666666666666..66668********977777..69**********999999999998876 PP

>> Bin3  Bicoid-interacting protein 3 (Bin3)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.6   0.0     0.041   1.1e+02      11      38 ..     188     215 ..     186     222 .. 0.81
   2 ?    8.1   0.0    0.0016       4.2      25      71 ..     481     527 ..     461     553 .. 0.75

  Alignments for each domain:
  == domain 1  score: 3.6 bits;  conditional E-value: 0.041
        Bin3  11 kwihLnkgDeglkrlfkkiyellkpgGv 38 
                  w+h  +gD+g++ ++ +  e+++ g  
  KOO21264.1 188 DWVHRTHGDAGIVYVLGHHPEVMSVGTD 215
                 5************999888777777655 PP

  == domain 2  score: 8.1 bits;  conditional E-value: 0.0016
        Bin3  25 lfkkiyellkpgGvlilEpqewksYkkkkklseelkenykelklrpe 71 
                 +++ i+++l p G ++l + +w+ Y+++++    + ++  +l + +e
  KOO21264.1 481 VYALIAAALGPRGAFVLHYSSWRVYEQQANAAGLVFNESLQLAVLKE 527
                 56778899******************999987666666555544444 PP

>> Methyltransf_31  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   0.1   0.00026      0.67       3      26 ..     382     405 ..     380     418 .. 0.76
   2 ?   -1.1   0.0      0.55   1.4e+03      90     119 ..     478     506 ..     459     535 .. 0.70

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 0.00026
  Methyltransf_31   3 kglrvlDlGCGtGeltfelaeelg 26 
                      + ++vlD GCG Ge + el + l 
       KOO21264.1 382 RSCVVLDFGCGDGEALRELGSHLH 405
                      6789************99987443 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 0.55
  Methyltransf_31  90 pdkileeiervlkpggilliedprllaelp 119
                       ++++  i  +l p g++++ + + ++ + 
       KOO21264.1 478 RACVYALIAAALGPRGAFVLHYSS-WRVYE 506
                      4689999999999******99998.33333 PP

>> PhoR  Phosphate regulon sensor protein PhoR
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.4   0.00014      0.37      47      69 ..     346     368 ..     341     383 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00014
        PhoR  47 rLsrWLrkpkklepPdgsGlWee 69 
                  L  WL+ p++++pP  sG+W +
  KOO21264.1 346 ALAAWLQPPPYKRPPPVSGVWAS 368
                 6999*****************86 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (570 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       332  (0.0185175); expected 358.6 (0.02)
Passed bias filter:                      294  (0.016398); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.50u 0.21s 00:00:00.71 Elapsed: 00:00:00.37
# Mc/sec: 4565.19
//
Query:       KOO21265.1  [L=748]
Description: hypothetical protein Ctob_000494 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (748 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       565  (0.0315132); expected 358.6 (0.02)
Passed bias filter:                      405  (0.0225891); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.59u 0.26s 00:00:00.85 Elapsed: 00:00:00.40
# Mc/sec: 5664.46
//
Query:       KOO21266.1  [L=374]
Description: molybdenum cofactor biosynthesis protein 1 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    4.6e-36  123.6   0.0    7.3e-36  122.9   0.0    1.3  1  Mob_synth_C  Molybdenum Cofactor Synthesis C
    2.9e-28   99.4   0.0    4.7e-28   98.7   0.0    1.4  1  Radical_SAM  Radical SAM superfamily
    4.8e-05   23.6   0.0    7.7e-05   23.0   0.0    1.3  1  Fer4_12      4Fe-4S single cluster domain
     0.0022   18.1   0.0     0.0037   17.4   0.0    1.3  1  Fer4_14      4Fe-4S single cluster domain


Domain annotation for each model (and alignments):
>> Mob_synth_C  Molybdenum Cofactor Synthesis C
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  122.9   0.0   1.6e-39   7.3e-36       1     127 [.     230     356 ..     230     357 .. 0.96

  Alignments for each domain:
  == domain 1  score: 122.9 bits;  conditional E-value: 1.6e-39
                  -EEEEEE---B-TTSSB--SSB--HHHHHHHHHHHS-EEEE-.-SST-SSEEEEETTT--EEEEE-TTTS--GGG--EEEE-TTSEEESSSS-SS-EE CS
  Mob_synth_C   1 ielrfIElmpvgegeewrekkvvsadeilerieerlalleak.ketkgpakrykikdgkgeiglIapvsepFCasCnRlRltadGklktCLfaeeeid 97 
                  i++rfIE+mp++ g++w+++++++ +++l r++++++ l+++ ++ ++ a  +k+++  g++ +Ia++++pFC sCnR+RltadG lk+CLf+++e++
   KOO21266.1 230 IDVRFIEYMPFD-GNRWKHESMMPFEDMLGRLKREHPTLAKQpTPANDVAVSWKLPESAGSVSFIASMTQPFCGSCNRIRLTADGSLKVCLFGSREVS 326
                  69*********9.899*********************999985666**************************************************** PP

                  HHHHHHTT--HHHHHHHHHHHHHT----HH CS
  Mob_synth_C  98 lrdllregaseeeLkelikealarkkekhk 127
                  lrd++rega++ eL el+  al+rk++ h+
   KOO21266.1 327 LRDAMREGATDAELLELVGGALQRKHAAHA 356
                  **************************9985 PP

>> Radical_SAM  Radical SAM superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   98.7   0.0     1e-31   4.7e-28       1     166 [.      61     224 ..      61     225 .. 0.98

  Alignments for each domain:
  == domain 1  score: 98.7 bits;  conditional E-value: 1e-31
                  EEEESEESS--TTTSCCTTHHHHHHHHHHHHHHHHHHHHHHHHHTTSEEEEEESSTGGGSTTHHHHHHHHHHTC.CCTEEEEEEECSSCHGHHHHHHH CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxx RF
  Radical_SAM   1 vvvtrgCnlrCsfCarpetvrregrgrslsveeileevkelkaekgvkevilgggepllypdfvellerlakla.vpgiritvetngtlpdeeklerl 97 
                  ++ t+ C+lrC++C     v  ++++r l ++e +++++ l ++ gv+ + l+ggep++++d+ e++  l  l+ +  + i++++ng+ + +++l  l
   KOO21266.1  61 ISLTERCSLRCVYCMPENGVDLTPDARLLRTDEMMRIARLL-VNAGVNKIRLTGGEPTVRRDLPEIVGGLNTLRpNGLRQIALTSNGIAL-PRMLPSL 156
                  57899************99**********************.9*******************************99**************.******* PP

                  HHTT-SEEEEEEBSSSHHHHHHHHTCTSHHHHHHHHHHHHHHTTSETEEEEEEEBTTTSHHHHHHHHHH CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Radical_SAM  98 lelgvdrvslgleaaddekvlklmnrghtfeevlealeklreagikrvvdrivglpGendeeleellel 166
                  +  g+dr++++++++d +++ k++ r++++ +vlea++++ e+g+ + + ++v++ G+nd+el +l+el
   KOO21266.1 157 VLNGLDRLNISIDTLDRDRFIKIT-RRDGLPRVLEAIDLALELGLAPLKLNCVLMAGVNDDELLALAEL 224
                  ************************.88*************************************99986 PP

>> Fer4_12  4Fe-4S single cluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.0   0.0   1.7e-08   7.7e-05      11     102 ..      63     155 ..      54     171 .. 0.78

  Alignments for each domain:
  == domain 1  score: 23.0 bits;  conditional E-value: 1.7e-08
     Fer4_12  11 fvsgCnlsCkgCfnketwsfksgkef.tkelleeiiedlkkesiegltllGGEPllpenaeallelvkevkeekpekdiwlytgytleelskk 102
                 ++++C+l+C +C+ ++  + +       ++ + +i + l +  ++++ l+GGEP ++   ++++  ++ ++ +++ +  + ++g  l  ++++
  KOO21266.1  63 LTERCSLRCVYCMPENGVDLTPDARLlRTDEMMRIARLLVNAGVNKIRLTGGEPTVRRDLPEIVGGLNTLRPNGLRQIALTSNGIALPRMLPS 155
                 3789*************99987766635777789**********************8888888888888888888777888888877777665 PP

>> Fer4_14  4Fe-4S single cluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.4   0.0   8.3e-07    0.0037       5      90 ..      64     147 ..      60     169 .. 0.82

  Alignments for each domain:
  == domain 1  score: 17.4 bits;  conditional E-value: 8.3e-07
     Fer4_14   5 lsgCnlsCkgCd..nketwkselgkpqteelleqilkdlkkseikiqglvltGGePLhyenkkellklvkrlkeeypekkiwletngt 90 
                 + +C+l C+ C   n  +   ++    t+e++ +i + l +  +  +++ ltGGeP    + +e++  ++ l+ ++   +i l +ng 
  KOO21266.1  64 TERCSLRCVYCMpeNGVDLTPDARLLRTDEMM-RIARLLVNAGV--NKIRLTGGEPTVRRDLPEIVGGLNTLRPNG-LRQIALTSNGI 147
                 679*********66666666788888888888.66656666666..779**********99999999999999999.67888888876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (374 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       352  (0.019633); expected 358.6 (0.02)
Passed bias filter:                      315  (0.0175693); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.41u 0.25s 00:00:00.65 Elapsed: 00:00:00.37
# Mc/sec: 3030.13
//
Query:       KOO21267.1  [L=384]
Description: transaminase transferring nitrogenous group [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      9e-47  160.0   0.0      1e-46  159.8   0.0    1.0  1  Aminotran_1_2    Aminotransferase class I and II
     0.0077   15.5   0.0       0.01   15.2   0.0    1.2  1  Beta_elim_lyase  Beta-eliminating lyase


Domain annotation for each model (and alignments):
>> Aminotran_1_2  Aminotransferase class I and II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  159.8   0.0   1.1e-50     1e-46       2     363 .]      10     362 ..       9     362 .. 0.86

  Alignments for each domain:
  == domain 1  score: 159.8 bits;  conditional E-value: 1.1e-50
                    EEEESSSSSTTSTTSSHHHHHHHHHHHHHHHHHTSTTST-BTTHHHHHHHHHHHHHCTCTTCHTTGGEGEEEESHHHHHHHHHHHHHHHTTT-EEE CS
  Aminotran_1_2   2 dvinLgsneylgdsgkptlpevakaekegalaggtlneygpidglpeleealakflgrseklklkreaavvvgsGagaliealifllklnpgdeil 97 
                    d++ L+++         ++pe++  +++ +   +++  yg  dglpe++ al   l   ++ +++++ +v v+ Ga+++   +   l l+++d+  
     KOO21267.1  10 DILSLAQGIVHWS----PPPEALASAAQ-LVGEHSTSLYGADDGLPEVRAALKTKLA--QENSITAS-EVMVTAGANQAFTNIVLSL-LDASDACA 96 
                    6788899999888....66666666666.57778899***************98888..45566666.9******************.******** PP

                    EEESS-THHHHHHHHTTSE....EEEEEBEETTTTEE-HHHHHHHHTTHHCTTE.TEEEEEEESS-TTT--B--HHHHHHHHHHHHHTTEEEEEEE CS
  Aminotran_1_2  98 vpdptyasyknilrlsgge....vvryplyseedfhldlealeealkeapegnk.ktkvilvesphNPtGtvatleeleklldlakkynlllfvDe 188
                    +++p+y ++  +l++ g+     ++  p  s  + + d++al     + +++   ++k++ v +p NPtG++++++ l +l +++ +++++l++D 
     KOO21267.1  97 LFKPYYFNHLMALQMTGAGsgadIFIAP--STTELQPDVNALRGEMHQRKAQGRpPIKLVTVSNPGNPTGVMIPKARLLELSAVCAEHGAWLVIDN 190
                    **************97665420144444..669**********9888765555469**************************************** PP

                    TTTTCBSSSSHTHHHHGGSTTSTTEEEEEESSSTTSSGGG-EEEEEEEHHHHHHHHHHHHHHTS..SHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
  Aminotran_1_2 189 aYagfvfgsldavatranveeepnllivgslsKafGlaGeRvGyilgnaavvsqlrklsrpfls..ssllqaavaaalsdallkqseleemrqrlq 282
                    +Y++f++ ++      ++  e+ +++ v s+sKafG++G+RvGy+++ + ++  l k++ ++ +  s l q++++aa+ ++ +   +++e+++ l+
     KOO21267.1 191 TYEHFAYPNEA----PHECIEAAHIVNVFSFSKAFGMMGWRVGYLAYPPPLAPELLKAQDTIVIcpSILSQRLALAAM-APGRC--WVHERVSGLA 279
                    *******9653....667777777788*******************************99999995555555555555.55545..********** PP

                    HHHHHHHHHHHHS..TEEEECCSCSSEEEEEETHHCHHHHHHHHHHTCTEEEEEGGGGTSTTEEEEECTTS-HHHHHHHHHHH CS
  Aminotran_1_2 283 krrkelrdeLael..glkvlasqsgmflltdlsaetakelskkLleevgvyvtpgtsftvpgrlRitvAglteeeleelveal 363
                    ++   + d+L+ +    ++ +  ++++l+  l+ e++ ++ + L+++++v+ +pg+ +++pg++R+++A+l+ e  + ++e+l
     KOO21267.1 280 EQKALVLDALTTAlpAGSIQGGSGAIYLFCKLPVEDDLAAVRWLTKKHKVATIPGSACGMPGHFRVCYANLPLESTRVAAERL 362
                    **********9999966666777************88888888*************************************997 PP

>> Beta_elim_lyase  Beta-eliminating lyase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.0   1.1e-06      0.01     107     201 ..     129     222 ..      54     241 .. 0.78

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 1.1e-06
                      TBE-HHHHHHHS--S-T.TS-EEEEEEEESSBTTTTTB---HHHHHHHHHHHHHCT-EEEEEETTHHHHHHHHTS-CHHHHTTSSEE.EEESSS CS
  Beta_elim_lyase 107 Gkmdlekleaaikevga.heekiklisltvTnntagGqvvsleelrevaaiakkygiplhlDgARfanaakslgeivkemfsyvDsv.tmslkK 198
                       + d+++l+  +++++a  +++ikl+++ +  n   G +++ + l e++a++ ++g  l++D +  ++  +  +e ++e+++ + +v ++s++K
       KOO21267.1 129 LQPDVNALRGEMHQRKAqGRPPIKLVTVSNPGNP-TGVMIPKARLLELSAVCAEHGAWLVIDNT--YEHFAYPNEAPHECIEAAHIVnVFSFSK 219
                      56799999999999888889***********995.9**************************86..7777777777777776666553566666 PP

                      TT- CS
  Beta_elim_lyase 199 dll 201
                        +
       KOO21267.1 220 AFG 222
                      655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (384 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       345  (0.0192426); expected 358.6 (0.02)
Passed bias filter:                      313  (0.0174578); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.44u 0.24s 00:00:00.68 Elapsed: 00:00:00.39
# Mc/sec: 2941.64
//
Query:       KOO21268.1  [L=519]
Description: myb-like DNA-binding domain containing protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.5e-30  104.4   4.9    4.8e-15   55.5   0.2    2.4  2  Myb_DNA-binding  Myb-like DNA-binding domain
    1.6e-24   85.9   0.8    3.4e-14   52.8   0.1    2.4  2  Myb_DNA-bind_6   Myb-like DNA-binding domain
     0.0088   15.9   0.1      0.026   14.4   0.0    1.8  2  Myb_DNA-bind_7   Myb DNA-binding like


Domain annotation for each model (and alignments):
>> Myb_DNA-binding  Myb-like DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.5   0.8   2.8e-17   1.7e-13       1      45 [.      33      82 ..      33      83 .. 0.88
   2 !   55.5   0.2     8e-19   4.8e-15       1      44 [.      89     132 ..      89     134 .. 0.96

  Alignments for each domain:
  == domain 1  score: 50.5 bits;  conditional E-value: 2.8e-17
                     CSSSBHHHHHHHHHHHHHHT.TC....HHHHHHHHTSS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgkWteeEdelLleavkkhG.nr....WkkIaerlggRtekqcrsrwrny 45
                     + +Wt eEd+   ++v+++  ++    W++Ia++l+gR +kqcr+rw+n 
       KOO21268.1 33 KRPWTLEEDDTVRRLVAEQRgVDganrWAEIAKYLPGRNGKQCRERWHNQ 82
                     579***************776445555*********************96 PP

  == domain 2  score: 55.5 bits;  conditional E-value: 8e-19
                      CSSSBHHHHHHHHHHHHHHTTCHHHHHHHHTSS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgkWteeEdelLleavkkhGnrWkkIaerlggRtekqcrsrwrn 44 
                      + +W++eEd++L+   +++Gn+W++Ia++l+gRt+++++++w++
       KOO21268.1  89 KDAWSKEEDDILIAKQREMGNKWAEIAKYLPGRTDNAIKNHWNS 132
                      579***************************************85 PP

>> Myb_DNA-bind_6  Myb-like DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.8   0.1   5.7e-18   3.4e-14       1      57 [.      36      97 ..      36      97 .. 0.92
   2 !   39.8   0.1   6.5e-14   3.9e-10       1      48 [.      92     139 ..      92     151 .. 0.92

  Alignments for each domain:
  == domain 1  score: 52.8 bits;  conditional E-value: 5.7e-18
  Myb_DNA-bind_6  1 WteeEdeiLlklveky.....gndWknIaealnrRtpkqcfdrwknkLrpkisrkkwskeed 57
                    Wt eEd++ ++lv ++      n W +Ia+ l+ R+ kqc++rw+n+L+p i++++wskeed
      KOO21268.1 36 WTLEEDDTVRRLVAEQrgvdgANRWAEIAKYLPGRNGKQCRERWHNQLDPAIRKDAWSKEED 97
                    ***************976663369********55**************************98 PP

  == domain 2  score: 39.8 bits;  conditional E-value: 6.5e-14
  Myb_DNA-bind_6   1 WteeEdeiLlklvekygndWknIaealnrRtpkqcfdrwknkLrpkis 48 
                     W++eEd+iL+   +++gn+W +Ia+ l+ Rt ++++++w+++Lr + +
      KOO21268.1  92 WSKEEDDILIAKQREMGNKWAEIAKYLPGRTDNAIKNHWNSGLRRVAE 139
                     ***************************55**************88755 PP

>> Myb_DNA-bind_7  Myb DNA-binding like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.0      0.57   3.4e+03      33      49 ..      63      79 ..      29      84 .. 0.66
   2 !   14.4   0.0   4.3e-06     0.026       7      51 ..      88     132 ..      79     165 .. 0.92

  Alignments for each domain:
  == domain 1  score: -2.0 bits;  conditional E-value: 0.57
  Myb_DNA-bind_7 33 iaklfpkrtrrqlKlKF 49
                    iak++p+r+ +q ++++
      KOO21268.1 63 IAKYLPGRNGKQCRERW 79
                    67777777777776665 PP

  == domain 2  score: 14.4 bits;  conditional E-value: 4.3e-06
  Myb_DNA-bind_7   7 ktkkWskeetekFYkaLsqfGtDFsliaklfpkrtrrqlKlKFkk 51 
                     +++ Wskee +      +++G  +  iak++p+rt++ +K+ +++
      KOO21268.1  88 RKDAWSKEEDDILIAKQREMGNKWAEIAKYLPGRTDNAIKNHWNS 132
                     7899*************************************9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (519 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       514  (0.0286686); expected 358.6 (0.02)
Passed bias filter:                      380  (0.0211947); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.51u 0.23s 00:00:00.74 Elapsed: 00:00:00.39
# Mc/sec: 3985.88
//
Query:       KOO21269.1  [L=669]
Description: syntaxin-binding protein 1-like protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   4.8e-111  372.8   0.6   5.8e-111  372.5   0.6    1.0  1  Sec1      Sec1 family
  ------ inclusion threshold ------
      0.071   12.8   0.0        0.2   11.4   0.0    1.7  1  Crp       Bacterial regulatory proteins, crp family


Domain annotation for each model (and alignments):
>> Sec1  Sec1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  372.5   0.6  6.4e-115  5.8e-111       3     573 ..      72     646 ..      71     647 .. 0.79

  Alignments for each domain:
  == domain 1  score: 372.5 bits;  conditional E-value: 6.4e-115
                 EEE-HHHHHHHHTT--HHHHHTTTEEETT..T--S-.........BTTSEEEEEE-S-HHHHHHHHHHHHSS..-SBS-EEEEESS---HHHHHHHHH. CS
        Sec1   3 LvlDkelskilssvlkvsdlleegVtkieklkkrepsk....realphlkaiyflrptkenidrlakdfisa..rrykeyhifftprlseslleglaka 95 
                 +  D  + ++lssv+k+s+llee++t +e+++ ++ps     r++lp+l+a yf++pt e+++rl+ df+++  ++yk++h+ff++++s+ l+ +++  
  KOO21269.1  72 MCADSFTVRVLSSVFKMSQLLEENITVVENITMKQPSGeylqRQPLPDLPAAYFIQPTIESVNRLITDFKDKkkPMYKSCHLFFSSHVSDALFGKIKA- 169
                 56799*********************7776653444336888999**********************9998899********************9995. PP

                 .SG.GGGEE.EEE----SEEEETTEEE-STTHHHHSTTG.....GG.......--HHHHHHHHHHHHHHH-..--EEEE.-TT-HHHHHHHH....... CS
        Sec1  96 deevvkkvk.lkelnldfvplesdlfslnpelplsfrdlyldndnsaleeeieslldriakgLlsvllslekkiPiiry.kgsaasmvakkladelkek 192
                  +++++ v+ +kelnl+fv++es+ f+l+   p+s ++l+  +d  a  e + ++  r+a  L+++++s+ + iP ir   ++ as     +a++l+ k
  KOO21269.1 170 -SNAINYVQsFKELNLEFVCTESNAFVLD--SPQSLPTLFAPEDMPAASEAKLQEQHRLAAMLATLCISM-GEIPLIRHsTRPVAS----AVAQLLQGK 260
                 .47899999999****************6..44444444443344444445667789*************.77******5555566....777777777 PP

                 ....HHHHTTT.....--SS--EEEEE-GGG-SSTTTS---BHHHHHHHHS--B..TEEEEEE--SSSEEEEEE--TT..-TTHHHHTTSBHHHHHHHH CS
        Sec1 193 ids.kknfese.....ssrqrpvLiIlDRsvDlvtpllhqwTYqaliddllggl..nnnnvvleeepkeekeaelvesssDeffaelrhlnfgevgekl 283
                 +++   +  s+     +++++ +L++lDRs D ++pl+h++TYqa+++dll  +  +++++  + +++e+++++++++ +D+++++lr ++++++g++l
  KOO21269.1 261 LTElAASGASFvtrtpEEKEKTTLLLLDRSYDAISPLVHEFTYQAMAHDLLS-IhdDKYTYHFVANNNEKQSKTVLLNDTDPLWTRLRSMHIADLGTLL 358
                 66644444444789999**********************************7.654455555555556666666666668******************* PP

                 HHHHHHHHHHH.HTTT....-..TTHHHHHHHHHH-GGGHHHHHHHHHHHHHHHHHHHHS-HHH.HHHHHHHHHHHH.SS--.B--..-HHHHHHHH.. CS
        Sec1 284 kkeakeyqeen.ekkrn.gak..esiadlkkfvaklpelqeekkklskHtnlaeellkevkkrkldellelEqdlat.gesdkkikekkvieeliad.. 375
                 ++e+k++ ++n e+ +  ++   ++++d+   ++ lp++qe ++ +s+H+ +++el+ +++k+ l+ ++ lEq++a+ ++s+ k   k+++ +l a   
  KOO21269.1 359 HTEFKQFLADNpEAAKLlSKDksKNLKDMTAGLRGLPKFQETHARYSLHMAVTQELMTKYNKHCLEAIATLEQNMACrEDSSGKAYGKQSLTDLRALle 457
                 ***********998887654488999999999*********************************************7433445555666666666677 PP

                 ..-TTS-H.HHHHHHHHHHHH...-B.-H.........T--GG....GGHHHHGGGGG........---.BGGG-------.......---------S. CS
        Sec1 376 ..deptseledklRLlllyslvegglkek.........elkellrelvqsalygleylktlrsleklgllkkrkgkksskkksslklikeeedeesnyd 463
                   d p s+ edk+RLl++y  +++g+k++         +++ +    +q a+ +l yl       ++++l+  k kk +k     k  ++ e+++ +  
  KOO21269.1 458 reDIPFSP-EDKMRLLMIYVATQDGIKQDerrqllnlaGISPE----DQVAILNLFYL-------NVTMLQGTKEKKEKK-----KVLRDFEEATYD-- 537
                 67666677.8************99**98855544433333333....44444566666.......577774444433333.....345666666666.. PP

                 ..TT-----HHHHHHHHHTTT-S-TTTS-BSS-GGGS----....----------------------S-EEEEEEEEEE-HHHHHHHHHHT...TSSSE CS
        Sec1 464 lsgvsryaPllvrlvealikgkklssespslskkdpsqees....ssslrsakktnsaskesaekkkkqrviVffvGGvTysEiralrllskqekknke 558
                    vsry+P l++l+ +l++ k l+  ++++++++++  e      + ++ ++k ++a  + +     +r+i++++GG +ysE+ral+++      ++e
  KOO21269.1 538 ---VSRYVPPLKQLCGDLLD-KGLELVEYPYTTEPKALVERarelAAEKAAKAKDKAAAVPVEVPATGKRLIIIMLGGLCYSELRALHEVRVMY-PGRE 631
                 ...9****************.6666666666666655555579996666666666666666666667899*****************9999433.8899 PP

                 EEEEEEEE--HHHHH CS
        Sec1 559 iiigttsilnpksfl 573
                 iiigtt +l+p+ +l
  KOO21269.1 632 IIIGTTAMLTPQAYL 646
                 ***********9876 PP

>> Crp  Bacterial regulatory proteins, crp family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   2.2e-05       0.2      15      30 ..     129     144 ..     123     144 .. 0.87

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 2.2e-05
                 -HHHHHHHHHHHHHTT CS
         Crp  15 TrETVSRlLtrLrekG 30 
                 T+E+V+Rl t+++ k+
  KOO21269.1 129 TIESVNRLITDFKDKK 144
                 9***********9886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (669 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       760  (0.0423894); expected 358.6 (0.02)
Passed bias filter:                      586  (0.0326845); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.63u 0.28s 00:00:00.91 Elapsed: 00:00:00.43
# Mc/sec: 4682.94
//
Query:       KOO21270.1  [L=1273]
Description: hypothetical protein Ctob_001706 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.6e-14   52.5   4.5      3e-05   23.6   0.1    4.6  4  EF-hand_6     EF-hand domain
    5.6e-14   50.6   8.1    2.5e-06   26.6   0.1    4.5  4  EF-hand_1     EF hand
    6.7e-13   48.3   2.0      2e-05   24.4   0.0    3.4  3  EF-hand_8     EF-hand domain pair
      9e-12   43.9   9.4     0.0007   19.0   0.1    4.6  4  EF-hand_5     EF hand
    2.3e-10   40.8   0.3    4.5e-06   27.0   0.1    3.0  2  EF-hand_7     EF-hand domain pair
  ------ inclusion threshold ------
       0.36   11.2   3.5        1.2    9.6   3.5    1.8  1  DUF3510       Domain of unknown function (DUF3510)
        1.1    8.6  17.7      0.061   12.7  10.8    2.1  2  DUF4407       Domain of unknown function (DUF4407)
        1.2    9.6   5.1        3.1    8.3   4.9    1.8  1  DUF16         Protein of unknown function DUF16
        3.7    7.3  19.4        9.5    6.0  19.4    1.6  1  MAT1          CDK-activating kinase assembly factor MAT1


Domain annotation for each model (and alignments):
>> EF-hand_6  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.4   0.0     0.044        88      12      27 ..     930     945 ..     929     953 .. 0.86
   2 !   14.8   0.1     1e-05     0.021       2      28 ..     961     987 ..     960     996 .. 0.90
   3 !    8.8   0.2   0.00084       1.7       5      21 ..    1059    1075 ..    1057    1075 .. 0.91
   4 !   23.6   0.1   1.5e-08     3e-05       1      27 [.    1102    1128 ..    1102    1137 .. 0.92

  Alignments for each domain:
  == domain 1  score: 3.4 bits;  conditional E-value: 0.044
   EF-hand_6  12 dgdGkidaeElrkalr 27 
                 +gdG+i++ E+r+  r
  KOO21270.1 930 SGDGEISPMEFRQNVR 945
                 69**********9777 PP

  == domain 2  score: 14.8 bits;  conditional E-value: 1e-05
   EF-hand_6   2 lreaFklfDkdgdGkidaeElrkalrk 28 
                 ++++F+ +D d++G +d  E++ al++
  KOO21270.1 961 VDALFNDLDLDKSGALDVGEIKIALKR 987
                 6789*********************94 PP

  == domain 3  score: 8.8 bits;  conditional E-value: 0.00084
   EF-hand_6    5 aFklfDkdgdGkidaeE 21  
                  + k++D++gdG +d++E
  KOO21270.1 1059 IVKQWDVNGDGRLDKDE 1075
                  6799***********98 PP

  == domain 4  score: 23.6 bits;  conditional E-value: 1.5e-08
   EF-hand_6    1 elreaFklfDkdgdGkidaeElrkalr 27  
                  e++e+F  fD+d+dG i+aeE+r al+
  KOO21270.1 1102 EIDELFSSFDTDNDGAITAEEVRVALK 1128
                  689**********************99 PP

>> EF-hand_1  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.2   0.0     0.082   1.6e+02      13      24 ..     931     942 ..     930     945 .. 0.93
   2 !   15.2   0.2   5.5e-06     0.011       1      29 []     960     988 ..     960     988 .. 0.94
   3 !    8.2   0.4     0.001         2       5      21 ..    1059    1075 ..    1057    1075 .. 0.89
   4 !   26.6   0.1   1.3e-09   2.5e-06       1      29 []    1102    1130 ..    1102    1130 .. 0.96

  Alignments for each domain:
  == domain 1  score: 2.2 bits;  conditional E-value: 0.082
                 SSSEEEHHHHHH CS
   EF-hand_1  13 gdGkIdfeEfke 24 
                 gdG I+  Ef++
  KOO21270.1 931 GDGEISPMEFRQ 942
                 9*********96 PP

  == domain 2  score: 15.2 bits;  conditional E-value: 5.5e-06
                 HHHHHHHHHTTTSSSEEEHHHHHHHHHHH CS
   EF-hand_1   1 elkeiFrefDkDgdGkIdfeEfkellkkl 29 
                 e++ +F+++D D++G +d  E k +lk+l
  KOO21270.1 960 EVDALFNDLDLDKSGALDVGEIKIALKRL 988
                 7899*********************9985 PP

  == domain 3  score: 8.2 bits;  conditional E-value: 0.001
                  HHHHHTTTSSSEEEHHH CS
   EF-hand_1    5 iFrefDkDgdGkIdfeE 21  
                  i +  D++gdG++d++E
  KOO21270.1 1059 IVKQWDVNGDGRLDKDE 1075
                  66789**********99 PP

  == domain 4  score: 26.6 bits;  conditional E-value: 1.3e-09
                  HHHHHHHHHTTTSSSEEEHHHHHHHHHHH CS
   EF-hand_1    1 elkeiFrefDkDgdGkIdfeEfkellkkl 29  
                  e++e+F+ fD+D+dG I+ eE + +lk+l
  KOO21270.1 1102 EIDELFSSFDTDNDGAITAEEVRVALKRL 1130
                  79************************986 PP

>> EF-hand_8  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.6   0.0   1.4e-07   0.00029       2      49 ..     932     982 ..     931     988 .. 0.83
   2 ?    0.4   0.3       0.3     6e+02      31      47 ..    1059    1075 ..    1058    1075 .. 0.88
   3 !   24.4   0.0   9.8e-09     2e-05      10      54 ..    1086    1129 ..    1084    1130 .. 0.86

  Alignments for each domain:
  == domain 1  score: 20.6 bits;  conditional E-value: 1.4e-07
   EF-hand_8   2 kgkItreelrrilrilglkk....glseeevdilfrefDtdgdGkisfeEFc 49 
                 +g+I++ e+r ++r+l l+     gl  +evd+lf+ +D+d++G+++  E  
  KOO21270.1 932 DGEISPMEFRQNVRKL-LPTelhaGLVISEVDALFNDLDLDKSGALDVGEIK 982
                 8************776.33335689*********************987765 PP

  == domain 2  score: 0.4 bits;  conditional E-value: 0.3
   EF-hand_8   31 lfrefDtdgdGkisfeE 47  
                  +++  D +gdG+++++E
  KOO21270.1 1059 IVKQWDVNGDGRLDKDE 1075
                  6788899********98 PP

  == domain 3  score: 24.4 bits;  conditional E-value: 9.8e-09
   EF-hand_8   10 lrrilrilglkkglseeevdilfrefDtdgdGkisfeEFcvller 54  
                  +r+++ +lg + g+   e+d+lf+ fDtd+dG+i+ eE  v l+r
  KOO21270.1 1086 FRTCVLKLGVE-GVRTTEIDELFSSFDTDNDGAITAEEVRVALKR 1129
                  77777445777.59999**********************999987 PP

>> EF-hand_5  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.9   0.0    0.0022       4.5      12      23 ..     931     942 ..     930     944 .. 0.91
   2 !   10.0   0.2   0.00024      0.48       2      21 ..     962     981 ..     961     986 .. 0.88
   3 !   10.8   0.2   0.00013      0.27       9      20 ..    1064    1075 ..    1061    1075 .. 0.92
   4 !   19.0   0.1   3.5e-07    0.0007       1      21 [.    1103    1123 ..    1103    1128 .. 0.89

  Alignments for each domain:
  == domain 1  score: 6.9 bits;  conditional E-value: 0.0022
                 -SSCE-HHHHHH CS
   EF-hand_5  12 gDGkIskeELkt 23 
                 gDG Is+ E+++
  KOO21270.1 931 GDGEISPMEFRQ 942
                 9*********97 PP

  == domain 2  score: 10.0 bits;  conditional E-value: 0.00024
                 HHHHHHH-SS-SSCE-HHHH CS
   EF-hand_5   2 kdtFqaiDlNgDGkIskeEL 21 
                 +++F+ +Dl+++G +++ E 
  KOO21270.1 962 DALFNDLDLDKSGALDVGEI 981
                 579*************9886 PP

  == domain 3  score: 10.8 bits;  conditional E-value: 0.00013
                  -SS-SSCE-HHH CS
   EF-hand_5    9 DlNgDGkIskeE 20  
                  D+NgDG+++k+E
  KOO21270.1 1064 DVNGDGRLDKDE 1075
                  9**********9 PP

  == domain 4  score: 19.0 bits;  conditional E-value: 3.5e-07
                  HHHHHHHH-SS-SSCE-HHHH CS
   EF-hand_5    1 lkdtFqaiDlNgDGkIskeEL 21  
                  ++++F+ +D+++DG I++eE 
  KOO21270.1 1103 IDELFSSFDTDNDGAITAEEV 1123
                  5679****************6 PP

>> EF-hand_7  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.7   0.0   0.00029      0.57       6      32 ..     963     989 ..     930    1022 .. 0.76
   2 !   27.0   0.1   2.3e-09   4.5e-06      10      68 ..    1062    1125 ..    1058    1143 .. 0.83

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00029
   EF-hand_7   6 eaFkelDtdgdgyldkeellrllrkif 32 
                   F+ lD d++g ld+ e++ +l+++ 
  KOO21270.1 963 ALFNDLDLDKSGALDVGEIKIALKRLQ 989
                 358888888888888888887777765 PP

  == domain 2  score: 27.0 bits;  conditional E-value: 2.3e-09
   EF-hand_7   10 elDtdgdgyldkeellr...........llrkifqgagegsklsdeelellfkefDtdkdGvisfdEFlk 68  
                  + D++gdg+ldk+e  r           +l+      g + + + +e+++lf  fDtd+dG i+ +E + 
  KOO21270.1 1062 QWDVNGDGRLDKDERARqrvpppqfrtcVLK-----LGVEGV-RTTEIDELFSSFDTDNDGAITAEEVRV 1125
                  66************55468888865544443.....266666.7799*******************9875 PP

>> DUF3510  Domain of unknown function (DUF3510)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   3.5   0.00059       1.2      65     117 ..    1135    1187 ..    1102    1194 .. 0.79

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 0.00059
     DUF3510   65 evleevtsrYletisevlssvkkteesLkrlkkarkgaaasanggeeasDddk 117 
                  e +++  +rY eti+e+ ++vk  +  +k+l++a++ a++++++ +e++ ++k
  KOO21270.1 1135 EDMKHTLKRYGETIKELTDQVKTRQAEWKKLQEAEEVAQRERAERKEMEAQEK 1187
                  4578899*****************************99988666666666666 PP

>> DUF4407  Domain of unknown function (DUF4407)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.6      0.41   8.2e+02     108     160 ..     981    1037 ..     966    1048 .. 0.55
   2 ?   12.7  10.8   3.1e-05     0.061     153     249 ..    1122    1222 ..    1071    1232 .. 0.80

  Alignments for each domain:
  == domain 1  score: -0.9 bits;  conditional E-value: 0.41
     DUF4407  108 Idaelaeeqqeeakelkeqlaaa....ltaelaeleaqiaalqaeidaaearldalr 160 
                  I+  l++ q+e+a +  ++ +      +  ++a++ + +a+l +e++ a++++++++
  KOO21270.1  981 IKIALKRLQNEAALASVDKANMLleveALRKQAKEYEALASLTGELEGAKKAIEKAN 1037
                  444455555555444433333224444333444444444455555555555554443 PP

  == domain 2  score: 12.7 bits;  conditional E-value: 3.1e-05
     DUF4407  153 earldalraeaqkeldgtkgtgttgvaGkgpaakekkaqldaaqaelaelkakld..........atarlaalraelaeleaerakeraasqaaaaa 239 
                  e r       a k l++++ +     +++g+  ke ++q +++qae+++l++  +          + +++++++a+ a  +a++a +++++qaaa++
  KOO21270.1 1122 EVR------VALKRLQNETEDMKHTLKRYGETIKELTDQVKTRQAEWKKLQEAEEvaqreraerkEMEAQEKAQAKEAAKAARLAIIEEKKQAAAQE 1212
                  222......2333333333233334789***********************9977999*9999998889999999999999999999999******* PP

     DUF4407  240 ddGllarlea 249 
                  ++ ++ar+ea
  KOO21270.1 1213 KAEFAARIEA 1222
                  ********99 PP

>> DUF16  Protein of unknown function DUF16
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.3   4.9    0.0016       3.1      27      86 ..    1105    1170 ..    1095    1191 .. 0.79

  Alignments for each domain:
  == domain 1  score: 8.3 bits;  conditional E-value: 0.0016
                  H....B-..BHHHHHHHHHHHH.....HHHHHHHHHHHHHHHHHHHHHHHHHHHHH.......HHH CS
       DUF16   27 e....fkdsnkqrLkkieakvd..klgeqinkleqkvekqgekikelkveqkaqgeelnkvdetle 86  
                  e    f  +n+  ++  e +v+   l+++ + ++++ ++ ge ikel+ ++k++++e +k++e+ e
  KOO21270.1 1105 ElfssFDTDNDGAITAEEVRVAlkRLQNETEDMKHTLKRYGETIKELTDQVKTRQAEWKKLQEAEE 1170
                  554459999999999999888743556777888999999999999999999999998888777665 PP

>> MAT1  CDK-activating kinase assembly factor MAT1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.0  19.4    0.0047       9.5      63     181 ..    1134    1248 ..    1120    1269 .. 0.66

  Alignments for each domain:
  == domain 1  score: 6.0 bits;  conditional E-value: 0.0047
        MAT1   63 veeTekkleqYekenkelIlknkeklkqeeeeleeleelekeekeekrkeekqeeeeekekkekakeelideLatssk.daeeiiekvkkkakkkks 158 
                  +e+ +++l+ Y +  kel  + k+++ +e ++l+e+ee+ ++e++e++++e+qe++++ke  + a+ ++i+e +++ + +  e  +++++k +   +
  KOO21270.1 1134 TEDMKHTLKRYGETIKELTDQVKTRQ-AEWKKLQEAEEVAQRERAERKEMEAQEKAQAKEAAKAARLAIIEEKKQAAAqEKAEFAARIEAKRRGGVK 1229
                  56678899********9999988886.57899**************************************997776652333344444444333322 PP

        MAT1  159 sekekleelnkelkkkatkfssg 181 
                  s ++++    ++ ++++++++ +
  KOO21270.1 1230 SPSKTA----ESPRTRRNSTEPS 1248
                  222222....2222222222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1273 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2081  (0.116069); expected 358.6 (0.02)
Passed bias filter:                      849  (0.0473534); expected 358.6 (0.02)
Passed Vit filter:                       153  (0.00853366); expected 17.9 (0.001)
Passed Fwd filter:                        26  (0.00145016); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 1.25u 0.33s 00:00:01.58 Elapsed: 00:00:00.57
# Mc/sec: 6735.63
//
Query:       KOO21271.1  [L=599]
Description: putative aarf domain-containing protein kinase 1-like protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    7.4e-24   84.2   0.0    1.9e-23   82.9   0.0    1.6  1  ABC1      ABC1 family
    1.2e-06   28.6   0.6    1.2e-05   25.4   0.3    2.7  2  APH       Phosphotransferase enzyme family
      0.003   17.0   0.0     0.0049   16.3   0.0    1.2  1  Pkinase   Protein kinase domain


Domain annotation for each model (and alignments):
>> ABC1  ABC1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   82.9   0.0   3.2e-27   1.9e-23       6     112 ..     186     294 ..     182     300 .. 0.90

  Alignments for each domain:
  == domain 1  score: 82.9 bits;  conditional E-value: 3.2e-27
        ABC1   6 kleeiFaefdeePiAaASiaqVhrAklks...geeVavKvqrpgvkkriksDlellkllakllkkflkelrldleelvdefskslleEldferEAknae 101
                 + e++Faefd+eP++aAS+aqVhrA+l     g eVavKvqrp ++ ++  D++ lk lak ++ +   +  d+ ++  e++ +l  E df +EA+++e
  KOO21271.1 186 SFESVFAEFDPEPLGAASVAQVHRAVLTPaygGGEVAVKVQRPAIEAKLLGDVAALKALAKSVRGIEA-IPVDYYTVFSELEVQLGDEFDFVKEAAAME 283
                 6799***********************9447799***************************8877665.5569************************** PP

        ABC1 102 kfrenfaklke 112
                 ++ + ++ +++
  KOO21271.1 284 RIGRTLSTDPM 294
                 **999988775 PP

>> APH  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.4   0.3     2e-09   1.2e-05      22     196 ..     220     397 ..     196     451 .. 0.59
   2 ?   -1.3   0.0      0.28   1.7e+03      87     117 ..     423     481 ..     403     572 .. 0.51

  Alignments for each domain:
  == domain 1  score: 25.4 bits;  conditional E-value: 2e-09
                 -EEEEEE-TTS-HHHHHHHHHHHHHHHHTT-B--B-CTTBS-EEETTEEEEEEE----EE-SSHHHHHHHHHHHHHHHHHHCCHHCH.-STTTB-.... CS
         APH  22 ryvlrrnpparaaeeirrevallrlLakagvpvPevlagdtddeeigllfalieyvpgrsllrklsaaqlpellealgeflaalhqvdpaalpla.... 116
                 ++++++ +pa  ++++ + va l++Lak+ v+  e++       +++++f  +e + g  ++         ++ e++g++l     ++ +  p+     
  KOO21271.1 220 EVAVKVQRPA-IEAKLLGDVAALKALAKS-VRGIEAIP-----VDYYTVFSELEVQLGDEFDF----VKEAAAMERIGRTLSTDPMTGSPVTPVVvtpr 307
                 6666666666.666666666666666666.43334444.....33333333333333333333....33334455666666554444333333333333 PP

                 ............SHHCHTCCHHHHHHCHHHCCCGCCTCCHHHHHHHHHHHHHHHH--S.SS-EEEE-SS-SGGGEEEC..TTEEEEE---TT- CS
         APH 117 ............dflaqdlellrqlesatarllaselldlleeleeqvlaalaallpg.elptvllHgDlhpgNllvdpddgrvtGviDfeda 196
                              +l q + l r +e+  +r++++  ++ ++ + +++laal +      l  ++ H D+hpgN+ v  ddgr+ G+iDf+ +
  KOO21271.1 308 pvgglvtkrvlvMDLLQGVPLSRAVEAMEKRGIDPGSPE-AQLFGRRLLAALTEAFGItILFGGFFHADPHPGNIFVL-DDGRI-GLIDFGQV 397
                 333333333333333355556677777777777777777.444444433333333333566899**************.99**9.*****765 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 0.28
                 HHHHHHHHHHHHHHHHCCHHCH.-STTTB-............................S CS
         APH  87 saaqlpellealgeflaalhqvdpaalpla............................d 117
                 ++aql+e+ + + e+  +l + +p++ p a                             
  KOO21271.1 423 DPAQLDEISRLALELGVRLREGAPREGPAAtaiwlfdgsvktlpggfdtnelspdspvK 481
                 56666666666666666666665554444444444444444444444444433333330 PP

>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.0   8.2e-07    0.0049      72     153 ..     315     405 ..     301     417 .. 0.77

  Alignments for each domain:
  == domain 1  score: 16.3 bits;  conditional E-value: 8.2e-07
                 EEEEEEE--TTEBHHHHHH..HHSS--HH..HHHHHHHHHHHHHHHHHHTT.....EE-SS-SGGGEEEETTTEEEE-SGTTSEESSSSCS CS
     Pkinase  72 elylvleyveggeladlle..rkgslsee..eakkiakqilegleylHskg.....iiHrDlKpeNiLidekgelKitDFGlakelesssk 153
                 +++lv+++++g  l +++e  +k+ +++   ea+ + +++l++l   +        ++H D  p Ni++ ++g + ++DFG +k++ ++ +
  KOO21271.1 315 KRVLVMDLLQGVPLSRAVEamEKRGIDPGspEAQLFGRRLLAALTEAFGITilfggFFHADPHPGNIFVLDDGRIGLIDFGQVKQIGQRAS 405
                 5678888888888888888764444544444888888888888876554443333399****************************99876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (599 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       397  (0.0221429); expected 358.6 (0.02)
Passed bias filter:                      352  (0.019633); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.56u 0.26s 00:00:00.82 Elapsed: 00:00:00.43
# Mc/sec: 4205.47
//
Query:       KOO21272.1  [L=2558]
Description: chromodomain helicase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.9e-45  153.8   0.0    1.9e-44  151.8   0.0    1.9  2  SNF2_N           SNF2 family N-terminal domain
    2.4e-33  115.2   0.0    6.1e-33  113.9   0.0    1.7  1  DUF3578          Domain of unknown function (DUF3578)
    4.4e-19   68.9   0.1    1.3e-18   67.4   0.0    1.9  1  Helicase_C       Helicase conserved C-terminal domain
    4.5e-13   48.9   0.0    1.1e-06   28.5   0.1    3.4  2  Chromo           Chromo (CHRromatin Organisation MOdifier) do
    5.4e-12   45.4   3.6    1.3e-11   44.2   3.6    1.7  1  PHD              PHD-finger
    8.3e-12   44.9  20.4    5.1e-08   32.8   1.8    2.9  2  zf-CXXC          CXXC zinc finger domain
    1.2e-09   38.5   2.2    2.5e-06   27.8   0.0    3.7  3  Agenet           Agenet domain
    6.8e-06   25.5   0.0    1.4e-05   24.5   0.0    1.4  1  HDA2-3           Class II histone deacetylase complex subunit
    8.6e-06   25.8   0.0    5.4e-05   23.2   0.0    2.2  2  ResIII           Type III restriction enzyme, res subunit
     0.0001   22.1   0.0    0.00023   21.0   0.0    1.6  1  DEAD             DEAD/DEAH box helicase
     0.0013   18.8   0.4     0.0034   17.4   0.4    1.6  1  Zf_RING          KIAA1045 RING finger
     0.0035   17.5   0.0     0.0096   16.1   0.0    1.8  1  Myb_DNA-binding  Myb-like DNA-binding domain
  ------ inclusion threshold ------
      0.046   13.3   0.1      0.096   12.3   0.1    1.6  1  PHD_2            PHD-finger
      0.054   13.4   0.8       0.14   12.0   0.8    1.7  1  C1_1             Phorbol esters/diacylglycerol binding domain
       0.11   12.4   1.2       0.23   11.4   1.2    1.5  1  zf-RING_9        Putative zinc-RING and/or ribbon
       0.15   12.2   0.6       0.36   11.0   0.6    1.6  1  DUF2318          Predicted membrane protein (DUF2318)
       0.57    9.8   4.3       0.32   10.6   0.3    2.7  2  zf-PHD-like      PHD/FYVE-zinc-finger like domain
        1.4    9.3  16.1      0.033   14.5   6.0    3.1  3  zf-RING_2        Ring finger domain


Domain annotation for each model (and alignments):
>> SNF2_N  SNF2 family N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.2       0.5     5e+02       1      13 [.     519     529 ..     519     536 .. 0.84
   2 !  151.8   0.0   1.9e-47   1.9e-44      56     349 ..     535     813 ..     525     814 .. 0.85

  Alignments for each domain:
  == domain 1  score: -0.8 bits;  conditional E-value: 0.5
                 HHHHHHHHH.... CS
                 xxxxxxxxxxxxx RF
      SNF2_N   1 yQkeavkwmlkRe 13 
                 yQ+++v+wm  R 
  KOO21272.1 519 YQRAGVQWM--RW 529
                 9********..54 PP

  == domain 2  score: 151.8 bits;  conditional E-value: 1.9e-47
                 --EEE---TTS--HHHHHHHHH...HHTTTS---.......S-EEEE--HHHHHHHHHHHHHH-TTS-EEE--SSHHHH...............----- CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...............xxxxx RF
      SNF2_N  56 rGGiLaDemGLGKTvqvlalilaqrakeekdkekkrkdtlagptLivvPaslldqWeneierhvsssalrvlvyggqkk...............mkkkn 139
                 r  iL DemGLGKT q+ +l++     ++ +k+       +gp+LivvP s++ +W++e++ ++s  a+  l +g                    +k +
  KOO21272.1 535 RSVILGDEMGLGKTAQSATLLH---CLHTFHKA-------KGPYLIVVPLSTVPHWQREVRDWTSLHAV--LFHGPADArevlldyewaskpraLTKAK 621
                 667******************9...44455554.......49***********************9987..4444433358*********998755665 PP

                 ------------EEEE-HHHHHHHT......TTS-S-S.-SEEEES-GGGT--TTSHHHHHHHH---S-EEEE-S--SSS-HHHHHHHHHHH-TTTT-- CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
      SNF2_N 140 tkvapklladydvvittYdvlsreaelqkkrsvlkqve.wkrvvlDEghtlknstskaaeavskLstsnrwiltGTPiqnsledlygLlkfLreepfge 237
                  + a     ++dv+ittY++    a      +++ +ve w +++lDE+h+lkn+  ka  a+++L     + ltGTP+qn++ +l+++l++L  e f +
  KOO21272.1 622 GFGATLARPNFDVCITTYETFTACA------ETFRKVErWAYLILDEAHRLKNKFGKALAALQSLGPIPTLALTGTPLQNNVGELWSILNLLDAEGFPS 714
                 6767777779************555......7888876699********************************************************** PP

                 HHHHHHHTHHHHHHHHHHHHHHHHTT-STTEE---GGGT--S---EEEEEEEEE--HHHHHHHH....................HHHHHH-HH.H-HHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxx RF
      SNF2_N 238 kqtfdkllqrpieaqaekgrsrLlqllqrlmlrrakkdveknlPpkteeiiflklskverksYnrllevlrkkalakllkrseaalksssksk.ekile 335
                  +tf +++ +       ++++ L + l++++lrr+k dv+  + p +e ++ +++++++++ Y  lle+           ++   l  +s+ +   + +
  KOO21272.1 715 IDTFLEQYGDMTS---AAQVEALTERLRPYLLRRTKGDVDLGITPMEETLVTVEITNYQKQTYRALLEQ-----------NRSLLLRGASHVNgPSFNN 799
                 ******9887777...999*********************************************33332...........2223333333333333789 PP

                 HHHHHHHHHH---X CS
                 xxxxxxxxxxxxxx RF
      SNF2_N 336 lllelrqacnhpql 349
                 l ++lr +cnhp l
  KOO21272.1 800 LAMQLRHCCNHPFL 813
                 99*********987 PP

>> DUF3578  Domain of unknown function (DUF3578)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  113.9   0.0   6.2e-36   6.1e-33       1     180 [.    1890    2071 ..    1890    2074 .. 0.89

  Alignments for each domain:
  == domain 1  score: 113.9 bits;  conditional E-value: 6.2e-36
     DUF3578    1 kilkeYkqar.tekfkghdlakllrkeipealekalkvkkdkykvkgsvGqGnwaevPWiavldkeittsaqkGvyivYLfsedmegvYLsLnqGvt 96  
                  k+++eY  ++ +e fk+ + +  l + i+  l+++     + + v++s G G wa+vPWiav d+   +s+q G y++YLf++dm++vYL+L qG++
  KOO21272.1 1890 KMMNEYDYRKkHEAFKKGHRWMTLMESIELGLQRNV---GEAFAVRSSCGCGGWAKVPWIAVSDPL--ESTQAGLYMQYLFRADMSAVYLCLGQGTS 1981
                  589***9998899***88888888888888888876...679**********************97..6899************************* PP

     DUF3578   97 klekelgkkkekkelkkraeeireelk......isseek....kdesidLkakkklgkgYeagtiaykeYdleelpseeeLeeDLkellevyee 180 
                  kl+  lg++++ ++l+++a+ +r++ +      +         ++ +idL+a+  l+ +Ye+++i+++ Y+  +  +e  L ++L e+l++y +
  KOO21272.1 1982 KLKAVLGSSAAMRHLEHVANFVRSKFSelttagE----LegwdTNGEIDLRADGGLAGDYEKACIISRMYEYGANLDEATLLKELDEMLTLYLA 2071
                  *************************774322233....14455999*********************************************965 PP

>> Helicase_C  Helicase conserved C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.4   0.0   1.3e-21   1.3e-18       2     111 .]     841     954 ..     840     954 .. 0.90

  Alignments for each domain:
  == domain 1  score: 67.4 bits;  conditional E-value: 1.3e-21
                 HHHHHHHHH.HHTTTTSEEEEEESSHHHHHH.HHHHHHHTTSTEEEESTTSTHHHHHHHHHHHH...TTSSSEEEESGGGTSSSTSTTESEEEESSSSS CS
  Helicase_C   2 kleallell.kleeeggkilifvntidrlek.vklllekkgikvavlhgelpqnereeileqfn...kgesdvLiatdvaerGidipkvnlVinfdlpr 95 
                 kl  l +ll kl+++g+++l+f++++  l+   ++l + + +++ +l+g+++ ++r++++++f    ++++ +L+ t++++ Gi+++ +++Vi++d+++
  KOO21272.1 841 KLVLLDKLLpKLQQQGHRVLLFSQFTMLLDLlEDYL-KLSRYSYERLDGSITGEKRQAAIDRFShpeSKTFLFLLGTRAGGVGINLTAADTVIIYDPDW 938
                 5666788889*****************997755666.5568**********************97755666699************************* PP

                 SHHHHHHHHTTSSSTT CS
  Helicase_C  96 nvtsyiqriGRtgRag 111
                 n+++ +q+  R++R+g
  KOO21272.1 939 NPQNDVQAQARCHRIG 954
                 **************97 PP

>> Chromo  Chromo (CHRromatin Organisation MOdifier) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.0   5.9e-06    0.0059       3      44 ..     265     311 ..     263     321 .. 0.86
   2 !   28.5   0.1   1.1e-09   1.1e-06      14      54 .]     444     485 ..     438     485 .. 0.78

  Alignments for each domain:
  == domain 1  score: 16.5 bits;  conditional E-value: 5.9e-06
                 EEEEEEEEEETTEEC..EEEEEEETTSTGGGTEEEEGGGCSSH...S CS
      Chromo   3 VerIidhrtdkdgle..leYlVKWkglpysentWEpeenlekc...f 44 
                 +++I+d r++ +g    +eYl+K +gl + ++ W +++++ek    +
  KOO21272.1 265 IDKILDGRMVAGGAPgeEEYLCKERGLAHVHALWLSAAEIEKNgrlS 311
                 89************9**************************986663 PP

  == domain 2  score: 28.5 bits;  conditional E-value: 1.1e-09
                 TEEC....EEEEEEETTSTGGGTEEEEGGGCSSHSHHHHHHHHHH CS
      Chromo  14 dgle....leYlVKWkglpysentWEpeenlekcfqelideFkkr 54 
                 dg+e    ++YlVKW+gl y+ +tWE  + ++    ++i ++++r
  KOO21272.1 444 DGEEddieTYYLVKWRGLGYEGCTWEY-ARIAGA--DAIAAYEER 485
                 444466669*****************8.566655..568888876 PP

>> PHD  PHD-finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.2   3.6   1.3e-14   1.3e-11       2      51 ..     115     163 ..     114     164 .. 0.93

  Alignments for each domain:
  == domain 1  score: 44.2 bits;  conditional E-value: 1.3e-14
                 BTTTTS.TTSTTSCEEEETTTSCEEETTTSSSTHSHHSHHSSTBSSTTTHT CS
         PHD   2 CavCkk.ksdeeeelvqCdgCkrwfHqkClkppleseekpegewlCekCke 51 
                 C+vC+  ++ e++el++Cd C ++fH++Cl+ppl   ++peg+w+C++C +
  KOO21272.1 115 CEVCGVeSWIEGNELLLCDACPKAFHTQCLTPPLA--SVPEGDWFCPSCAS 163
                 ******77778**********************99..99999*******86 PP

>> zf-CXXC  CXXC zinc finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.4   4.9   9.2e-08   9.2e-05      18      45 ..     185     212 ..     183     213 .. 0.92
   2 !   32.8   1.8   5.1e-11   5.1e-08      19      46 ..    1568    1595 ..    1565    1596 .. 0.92

  Alignments for each domain:
  == domain 1  score: 22.4 bits;  conditional E-value: 9.2e-08
                 --.BS-SCCCCTSCCCTS-S-S---BGG CS
     zf-CXXC  18 tedCgkCsaCrdkkkfggpgkkkqkCrk 45 
                 + dCg+C +Crdk+kfgg++k++++C++
  KOO21272.1 185 RLDCGTCINCRDKPKFGGENKRHKTCKL 212
                 569***********************85 PP

  == domain 2  score: 32.8 bits;  conditional E-value: 5.1e-11
                  -.BS-SCCCCTSCCCTS-S-S---BGGG CS
     zf-CXXC   19 edCgkCsaCrdkkkfggpgkkkqkCrkR 46  
                  +dCg+C +C+dk+kfggp++k+qkC++ 
  KOO21272.1 1568 DDCGECVFCLDKPKFGGPNTKRQKCVLK 1595
                  89***********************975 PP

>> Agenet  Agenet domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.8   0.0   2.5e-09   2.5e-06       1      60 [.    2205    2274 ..    2205    2275 .. 0.90
   2 ?    2.1   0.0      0.28   2.8e+02      49      60 ..    2328    2339 ..    2320    2340 .. 0.87
   3 ?    5.3   0.8     0.028        28       3      53 ..    2464    2510 ..    2460    2525 .. 0.66

  Alignments for each domain:
  == domain 1  score: 27.8 bits;  conditional E-value: 2.5e-09
      Agenet    1 GdkVEvlsdeegfrGaWfrAtilkvkegdkylVeYdd.lddddgskpleEwvdas.........diRPlp 60  
                  G  VEvl+d ++  GaWf+A +l+ k  dk+ VeY++ l d d+ +++  +             ++RPlp
  KOO21272.1 2205 GMSVEVLQDSAEHFGAWFEARVLDHKAPDKIRVEYEElLADGDDVDEMDDTAQMPglqqlefvrKVRPLP 2274
                  778*******9999***********9999*********99999999999988888888888888888877 PP

  == domain 2  score: 2.1 bits;  conditional E-value: 0.28
      Agenet   49 EwvdasdiRPlp 60  
                   +vdas++RP+p
  KOO21272.1 2328 HTVDASQLRPQP 2339
                  59*********9 PP

  == domain 3  score: 5.3 bits;  conditional E-value: 0.028
      Agenet    3 kVEvlsdeegfrGaWfrAtilkv.kegd.kylVeYddlddddgskpleEwvda 53  
                  +VEv   e+ + + W++A ++ v  +g  ++ +  +d     gs+  e w+++
  KOO21272.1 2464 EVEVAASEDAPAV-WVPAEVIAVlVDGTfQARIVLPD-----GSDQWEDWFSW 2510
                  4556666999955.********953333566666666.....55555556655 PP

>> HDA2-3  Class II histone deacetylase complex subunits 2 and 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.5   0.0   1.4e-08   1.4e-05      50     247 ..     796     978 ..     755     988 .. 0.77

  Alignments for each domain:
  == domain 1  score: 24.5 bits;  conditional E-value: 1.4e-08
                 HHHHHH.HHHHHHH-GGGT--TT--S-S-S...TTHHHHHHHT-HHHHHHHHHHHHHTTSS....EEEEEEE-STHHHHHHHHHHTTSSSEEEESSS-- CS
      HDA2-3  50 slticlenlslvanHPsLLvdHympkklll...kelpeklaetSgKFkvlndlvnliierkrksslnvlvvakskkeldLiEalllGkklkikrysgek 145
                 s++ +  +l+   nHP L+   +    l +   ++  e+l+ +SgK+ +l +l+  ++++       vl+ ++    ldL+E +l   + +++r++g +
  KOO21272.1 796 SFNNLAMQLRHCCNHPFLIKGVIQAERLHTaadSDYLERLIASSGKLVLLDKLLPKLQQQG----HRVLLFSQFTMLLDLLEDYLKLSRYSYERLDG-S 889
                 45555557778889999987777777776522268889**********************9....99****************************99.5 PP

                 S--S---S-..................-SEEEEEEESS---TTTS--TT-S-EEEEEE-SST--TTSHHHHHHH--------.--EEEEEETTSHHHHH CS
      HDA2-3 146 lydekkkkskdtkknsrktkeklkkkihsltihllsttrqltkdksllenikfdliiafDssvdtsspsveslrtqnrkknk.lpiirlvpinSieHvk 243
                 + +ek++ +            +  ++  s+t+++l  tr         + + +d +i  D++ +++++   + r ++  + k + ++rl++  + e+ +
  KOO21272.1 890 ITGEKRQAAI-----------DRFSHPESKTFLFLLGTRAGGV---GINLTAADTVIIYDPDWNPQNDVQAQARCHRIGQTKvVSVYRLITKGTYEQTM 974
                 8888888882...........2223346789999999988744...4677788***************99999998876555599**********9999 PP

                 HHHT CS
      HDA2-3 244 Lcfk 247
                 +++ 
  KOO21272.1 975 YERA 978
                 8876 PP

>> ResIII  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.2   0.0   5.5e-08   5.4e-05       4     169 ..     516     692 ..     514     694 .. 0.69
   2 ?   -0.9   0.0       1.4   1.4e+03       4      96 ..     766     897 ..     763     916 .. 0.67

  Alignments for each domain:
  == domain 1  score: 23.2 bits;  conditional E-value: 5.5e-08
                 E-HHHHHHHHHHT......TTSEEEEEESTTSTHHHHHHHHHHHH-S......-EEEEESSHHHHHHHHHHGGGGTGG..................... CS
      ResIII   4 lreyQeeaienlleklkskrdkrglikmaTGtGKTlvaaklierllkkgkee.kflflvprkslleqtleefkkflseayke................. 84 
                 lr+yQ   ++ ++ ++   r + +++  + G GKT  +a l   l++ +k +   l++vp    +  +++e+++++s ++                   
  KOO21272.1 516 LRDYQRAGVQWMRWNYV--RGRSVILGDEMGLGKTAQSATLLHCLHTFHKAKgPYLIVVPLS-TVPHWQREVRDWTSLHAVLfhgpadarevlldyewa 611
                 67788888877777774..77888899999*****************999995666666655.556677777444443321123344433443333322 PP

                 ....GEEEESSS-B--..............-SEEEEEHHHHHHTH........HHHTTT-SEEEEETGGGTTS.TTTHHH..HHT---SEEEEEESS- CS
      ResIII  85 ....igkkvsgdkkka.......kekdstnkkilvttiqsldadseeeeeeseellrdrfdviiiDEaHrlgakkswrei..lekfkeavllglTATp 169
                     +                     ++ n ++++tt+++++a        ++  + +r  ++i DEaHrl+  k+ +++  l+++ +   l+lT+Tp
  KOO21272.1 612 skprA----------LtkakgfgATLARPNFDVCITTYETFTACA------ETFRKVERWAYLILDEAHRLKN-KFGKALaaLQSLGPIPTLALTGTP 692
                 32222..........03344444555789****************......6667778889************.54443233999999*********9 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 1.4
                 E-HHHHHHHHHHT................................................TTSEEEEEESTTSTHHHHHHHHHHHH-S.....-EEEE CS
      ResIII   4 lreyQeeaienlleklks..........................................krdkrglikmaTGtGKTlvaaklierllkkgkeekflfl 60 
                 + +yQ++  ++lle+  s                                            d  +l  +   +GK +++ kl  +l+++g+  ++l++
  KOO21272.1 766 ITNYQKQTYRALLEQNRSlllrgashvngpsfnnlamqlrhccnhpflikgviqaerlhtAADSDYLERLIASSGKLVLLDKLLPKLQQQGH--RVLLF 862
                 56677777777776666666666666666666666666666777777777776666666656667777777778888888888889998888..77777 PP

                 ESSHHHHHHHHHHGGGGTGG....GEEEESSS-B-- CS
      ResIII  61 vprkslleqtleefkkflseaykeigkkvsgdkkka 96 
                  + + ll+ +le++ k++   y++  ++++g+k++a
  KOO21272.1 863 SQFTMLLD-LLEDYLKLSRYSYERLDGSITGEKRQA 897
                 77766665.556666666666677888888888877 PP

>> DEAD  DEAD/DEAH box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.0   0.0   2.3e-07   0.00023      12     144 ..     532     676 ..     517     699 .. 0.70

  Alignments for each domain:
  == domain 1  score: 21.0 bits;  conditional E-value: 2.3e-07
                 HTTCEEEEEESTTSSHHHHHHHHHHHHHHHSTTSTS-EEEEEESSHHHHHHHHHHHHHHTT........TSTSEEE.EEETTSSHHHHHHHH....... CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx........xxxxxxx.xxxxxxxxxxxxxxx....... RF
        DEAD  12 lgggdvlvaaeTGsGKTlaflipvlqivyetkgktgpkalivePtreLaeqtlnnlkkfkk........yidlrvl.liiggvaardqlskl....... 94 
                 ++g++v++  e G GKT+  +  +l+++ +t +k +   liv+P+        ++++ +++        ++d r++ l ++  ++ + l+k        
  KOO21272.1 532 VRGRSVILGDEMGLGKTAQ-SATLLHCL-HTFHKAKGPYLIVVPLSTV-PHWQREVRDWTSlhavlfhgPADAREVlLDYEWASKPRALTKAkgfgatl 627
                 3799*************86.55555555.456788889999***9875.44556666666633355443345666635577666666666664555544 PP

                 .HTTCSEEEEEHHHHHHHHHCTSSHCTTEEEEEEETHHHHHHTTTHHHHHH CS
                 .xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD  95 .dngvdivvgtpgrlddllstgklnlsqvrflVlDEadrlldqgfsdfinr 144
                  + + d+ ++t + +    +t + ++++  +l+lDEa+rl ++ f++ + +
  KOO21272.1 628 aRPNFDVCITTYETFTACAETFR-KVERWAYLILDEAHRLKNK-FGKALAA 676
                 3445*************997766.7****************98.9888877 PP

>> Zf_RING  KIAA1045 RING finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.4   0.4   3.4e-06    0.0034       5      35 ..     112     145 ..     108     150 .. 0.84

  Alignments for each domain:
  == domain 1  score: 17.4 bits;  conditional E-value: 3.4e-06
     Zf_RING   5 delCeiC...evytaeelypCRvCtkvfHegClr 35 
                  e+Ce+C   +  +++el+ C  C k fH++Cl 
  KOO21272.1 112 GETCEVCgveSWIEGNELLLCDACPKAFHTQCLT 145
                 589****55233479*****************96 PP

>> Myb_DNA-binding  Myb-like DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.0   9.6e-06    0.0096       3      27 ..    1403    1428 ..    1402    1434 .. 0.92

  Alignments for each domain:
  == domain 1  score: 16.1 bits;  conditional E-value: 9.6e-06
                       SSBHHHHHHHHHHHHHHT.TCHHHHH CS
  Myb_DNA-binding    3 kWteeEdelLleavkkhG.nrWkkIa 27  
                        Wt  Ed  Ll +v+ hG  +W++I+
       KOO21272.1 1403 TWTSAEDAALLLGVHTHGyANWAAIL 1428
                       6************************6 PP

>> PHD_2  PHD-finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.1   9.6e-05     0.096       2      36 .]     127     162 ..     126     162 .. 0.87

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 9.6e-05
       PHD_2   2 npllsCdkCsvaVHasCYGvskesdgee.WlCrrCe 36 
                 n ll Cd C  a+H +C   +  s+ e+ W C  C+
  KOO21272.1 127 NELLLCDACPKAFHTQCLTPPLASVPEGdWFCPSCA 162
                 889**************987777777667****995 PP

>> C1_1  Phorbol esters/diacylglycerol binding domain (C1 domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.8   0.00015      0.14       9      43 ..     110     144 ..     103     146 .. 0.90

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 0.00015
                 SS--B-TTT-SB--SSSS-EEEETTT--EE-CCCC CS
        C1_1   9 kqptfCkhCgeflwgkekqglkCswCkllvHkkCh 43 
                 ++  +C+ Cg   w ++   l C++C   +H +C+
  KOO21272.1 110 DRGETCEVCGVESWIEGNELLLCDACPKAFHTQCL 144
                 56789*****************************7 PP

>> zf-RING_9  Putative zinc-RING and/or ribbon
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   1.2   0.00023      0.23     153     203 ..     110     163 ..     106     166 .. 0.81

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00023
   zf-RING_9 153 akgfiCelCkseellfpfqlktverCekCkavfHkeClkkkekk......ecpkcer 203
                 ++g +Ce+C  e+ +     ++   C++C + fH++Cl+    +       cp c+ 
  KOO21272.1 110 DRGETCEVCGVESWIEG---NELLLCDACPKAFHTQCLTPPLASvpegdwFCPSCAS 163
                 789*******9998865...77888************97655446777888888876 PP

>> DUF2318  Predicted membrane protein (DUF2318)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.6   0.00036      0.36      35      65 ..     113     143 ..     104     147 .. 0.91

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00036
     DUF2318  35 daCevCekkgYvqegeelvCknCgvrfalds 65 
                 ++CevC+ +++++ +e l C +C + f+++ 
  KOO21272.1 113 ETCEVCGVESWIEGNELLLCDACPKAFHTQC 143
                 68************************99876 PP

>> zf-PHD-like  PHD/FYVE-zinc-finger like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.3   0.00032      0.32       1      31 [.     115     145 ..     115     149 .. 0.93
   2 ?   -2.0   0.4       2.4   2.4e+03      60     106 ..    2370    2416 ..    2366    2423 .. 0.86

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00032
  zf-PHD-like   1 CdtCaeskdeekgqlvyCqGCslsyhkaClG 31 
                  C++C+ ++  e  +l+ C  C +++h +Cl 
   KOO21272.1 115 CEVCGVESWIEGNELLLCDACPKAFHTQCLT 145
                  9******988889****************96 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 2.4
  zf-PHD-like   60 kkkdklapkldvCqeCkeegksckpfrekktakqeeklreendgvdP 106 
                    +kd++ap+ +v q+  e+g + + + +k+++++ +k   ++  ++P
   KOO21272.1 2370 VAKDESAPEPEVEQATGEAGPAEALIAKKMSPRKAKKSAPDEPDDNP 2416
                   579*******************9999999999999998877766666 PP

>> zf-RING_2  Ring finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.5   6.0   3.3e-05     0.033       2      43 ..     114     161 ..     113     162 .. 0.92
   2 ?    0.6   0.1      0.74   7.3e+02      12      27 ..     548     563 ..     542     564 .. 0.80
   3 ?   -2.4   0.6       6.6   6.5e+03       2       9 ..    1572    1579 ..    1566    1592 .. 0.67

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 3.3e-05
   zf-RING_2   2 eCpIC.leelssadsvlll.pCgHvfhreClerwlrssst....CPlC 43 
                 +C +C  e++ +++++ll+  C + fh +Cl+  l+s ++    CP C
  KOO21272.1 114 TCEVCgVESWIEGNELLLCdACPKAFHTQCLTPPLASVPEgdwfCPSC 161
                 7****99********998857************999999999****** PP

  == domain 2  score: 0.6 bits;  conditional E-value: 0.74
   zf-RING_2  12 sadsvlllpCgHvfhr 27 
                 +a+s++ll+C H+fh+
  KOO21272.1 548 TAQSATLLHCLHTFHK 563
                 456777889******7 PP

  == domain 3  score: -2.4 bits;  conditional E-value: 6.6
   zf-RING_2    2 eCpIClee 9   
                  eC+ Cl++
  KOO21272.1 1572 ECVFCLDK 1579
                  56666654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (2558 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1748  (0.0974957); expected 358.6 (0.02)
Passed bias filter:                      585  (0.0326287); expected 358.6 (0.02)
Passed Vit filter:                       126  (0.00702772); expected 17.9 (0.001)
Passed Fwd filter:                        37  (0.0020637); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              18  [number of targets reported over threshold]
# CPU time: 1.75u 0.37s 00:00:02.12 Elapsed: 00:00:00.57
# Mc/sec: 13448.68
//
Query:       KOO21273.1  [L=483]
Description: camk family protein kinase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.2e-39  135.4   0.0    2.2e-39  135.4   0.0    2.7  3  Pkinase         Protein kinase domain
    2.1e-19   69.8   0.0    1.4e-18   67.1   0.0    2.3  1  Pkinase_Tyr     Protein tyrosine kinase
    0.00083   18.7   0.0     0.0033   16.8   0.0    1.9  1  Kinase-like     Kinase-like
     0.0072   15.7   0.0      0.013   14.8   0.0    1.4  1  Kdo             Lipopolysaccharide kinase (Kdo/WaaP) family
  ------ inclusion threshold ------
      0.067   11.9   0.0      0.067   11.9   0.0    2.6  3  Pkinase_fungal  Fungal protein kinase


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  135.4   0.0   6.2e-43   2.2e-39       4     216 ..       2     241 ..       1     286 [. 0.84
   2 ?   -5.8   3.3         5   1.8e+04      35      46 ..     391     406 ..     377     433 .. 0.48
   3 ?   -3.9   0.6         2   7.1e+03      16      42 ..     420     445 ..     415     453 .. 0.64

  Alignments for each domain:
  == domain 1  score: 135.4 bits;  conditional E-value: 6.2e-43
                 EEEEEEESSEEEEEEEETT..TTEEEEEEEEECHCHCHHHH...HHHHHHHHHHH.HHSCTTB--EEEEEEESSEEEEEEE--TTEBHHHHHHHHSS-- CS
     Pkinase   4 leklGeGsfGkVykaveke..tgkivAvKkikkekakkkke...kkvlrEikilk.klkhpnivrlyevfeekdelylvleyveggeladllerkgsls 96 
                 +e+lG+G ++ V+ a +++   +++vA+K++  +   + k    +++ +E+++l+ k+khp ivrl+e++ + +++++vle ++gg+l  +l +++ ++
  KOO21273.1   2 HEELGTGFSSAVLLASRRDipGKEEVALKVLPLKVLLNPKSellDTLKTEVELLRgKVKHPCIVRLIETCCDAKSFFIVLEPLKGGDLLGALANRRFFP 100
                 589**********99987633689*******99987666655789*********85788**************************************** PP

                 HHHHHHHHHHHHHHHHHHHHTTEE-SS-SGGGEE.EE.TTTEEEE-SGTTSEESSSSCSBCTTTSCGGGS-HHHH...................TTSCB CS
     Pkinase  97 eeeakkiakqilegleylHskgiiHrDlKpeNiL.id.ekgelKitDFGlakelessskltsfvgtseYlAPEvl...................keney 174
                 e+ ak i+++++ ++e+lH+ +++HrD+K eN+  id ++ e K++DFG ++  + +  ++   +t +Y+APEvl                   ++ +y
  KOO21273.1 101 EDLAKGIFANVVLAVEHLHKCKLVHRDIKAENLCtIDvNSTEYKLIDFGSCADTSAGD-VNGLAATAHYCAPEVLksagyaeatgkkgavsiigSGLGY 198
                 ********************************9736777888**************98.****************999998888877777666666889 PP

                 .SHHHHHHHHHHHHHHHHHSS-STTTSSHHHHHHHHHHTHHHH CS
     Pkinase 175 .skkvDvWslGvilyelltgkppfsgekgkekvekeldqleki 216
                  ++++D+WslGv+l+ +lt+k pf ++ +++ v  +   l+k 
  KOO21273.1 199 nGPASDMWSLGVLLFFMLTRKLPFGSTMDTSGVIVKRIPLTKK 241
                 8************************555544333333223333 PP

  == domain 2  score: -5.8 bits;  conditional E-value: 5
                 HCHCHHHH....HHHH CS
     Pkinase  35 ekakkkke....kkvl 46 
                   ak +ke     k+ 
  KOO21273.1 391 AAAKAEKEkvaaAKAE 406
                 3333333322112222 PP

  == domain 3  score: -3.9 bits;  conditional E-value: 2
                 EEEEETTTTEEEEEEEEECHCHCHHHH CS
     Pkinase  16 ykaveketgkivAvKkikkekakkkke 42 
                  ka+ ++t++  A K  k   ak  k+
  KOO21273.1 420 AKAK-AKTEEAAAAKAAKAAAAKAAKD 445
                 5555.5677777777777766666555 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.1   0.0   3.9e-22   1.4e-18       4     209 ..       2     225 ..       1     257 [. 0.80

  Alignments for each domain:
  == domain 1  score: 67.1 bits;  conditional E-value: 3.9e-22
                  EEEEEEESSEEEEEEEEETTTTSSEEEEEEEEEST....TSSHHHHHHHHHHHHHHHTS.-BTTB--EEEEEESSSSEEEEEE--TTEBHHHHHHHTC CS
  Pkinase_Tyr   4 gkklGeGafGkVvegtlkgekekkevkVavKtlke....eateeekeelleeakimkkl.khpnivkllgvctkeepllivteyvkgGdLlkfLrkke 96 
                  +++lG G  + V  ++ +  +   +++Va+K+l      + ++e  + l +e+++++   khp iv+l+  c ++++ +iv+e +kgGdLl  L ++ 
   KOO21273.1   2 HEELGTGFSSAVLLASRR--DIPGKEEVALKVLPLkvllNPKSELLDTLKTEVELLRGKvKHPCIVRLIETCCDAKSFFIVLEPLKGGDLLGALANR- 96 
                  689*************99..6666778888887541121334444777888*****9766**********************************998. PP

                  TTTSBHHHHH.HHHHHHHHHHHHHHHTTEEEST-SGGG.EEEEE.TTEEEE-STTTHEETTTSSEEEETTSSTSGGGGS-HHHHHHSE.......... CS
  Pkinase_Tyr  97 kekltlkdll.sfalqvAkGmeyLeskklvHrdlaarN.vLlse.nkvvkisDfGLardiekddeyvkkeeaklpvkWmapEslkekk.......... 181
                    ++  +dl   + ++v  ++e+L++ klvHrd+ a N + ++  ++  k+ DfG + d+    +  + ++     +++apE+lk+            
   KOO21273.1  97 --RFFPEDLAkGIFANVVLAVEHLHKCKLVHRDIKAENlCTIDVnSTEYKLIDFGSCADT----SAGDVNGLAATAHYCAPEVLKSAGyaeatgkkga 188
                  ..55555555168899**********************44455425589********999....556667888999*********998899999**** PP

                  ..........EEHHHHHHHHHHHHHHHHTTSSGTTTTS CS
  Pkinase_Tyr 182 ..........ftsksDvWsfGvllwEiftlgespypgl 209
                               +sD+Ws Gvll+ ++t  + p+ + 
   KOO21273.1 189 vsiigsglgyNGPASDMWSLGVLLFFMLT-RKLPFGST 225
                  *******9966689***********9998.45555444 PP

>> Kinase-like  Kinase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   0.0   9.2e-07    0.0033     136     254 ..      95     226 ..      81     235 .. 0.72

  Alignments for each domain:
  == domain 1  score: 16.8 bits;  conditional E-value: 9.2e-07
  Kinase-like 136 ethkkletiarlllTlqlirlaanLqakglvhgkftvdnllld..ekgglmlggftaLvragtkvvlseve..kgfaPpEllgsrgg..ytrknktkm 227
                  ++++  e++a+ +  ++++  + +L++  lvh +++++nl+    +    +l +f++     +  v +  +  + +  pE+l s+g    t k+ + +
   KOO21273.1  95 NRRFFPEDLAKGIF-ANVVLAVEHLHKCKLVHRDIKAENLCTIdvNSTEYKLIDFGSCADTSAGDV-NGLAatAHYCAPEVLKSAGYaeATGKKGAVS 190
                  55666678888888.7899999******************97522577899*****9887665555.4444335678899999966543333344433 PP

  Kinase-like 228 th.........kldaWqlGlviyriwclklPltlat 254
                   +         + d W lG+  +++  +klP++   
   KOO21273.1 191 IIgsglgyngpASDMWSLGVLLFFMLTRKLPFGSTM 226
                  3333333333347*******************9765 PP

>> Kdo  Lipopolysaccharide kinase (Kdo/WaaP) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.0   3.7e-06     0.013      93     173 ..      78     155 ..      64     160 .. 0.83

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 3.7e-06
         Kdo  93 lllterlegaqdLedllakwaelaeelkrallkavgrliaklhragvnHadlyaknillqqeeeeeaeiwliDldkarlrl 173
                 +++ e l+g  dL   la+ + ++e l + ++ +v  +++ lh+ ++ H+d+ a n+     +    e  liD+  ++  +
  KOO21273.1  78 FIVLEPLKGG-DLLGALANRRFFPEDLAKGIFANVVLAVEHLHKCKLVHRDIKAENLCTIDVN--STEYKLIDFGSCADTS 155
                 6788888876.455555554669*********************************8766555..799******9998665 PP

>> Pkinase_fungal  Fungal protein kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   1.9e-05     0.067     312     363 ..     108     155 ..     102     181 .. 0.73
   2 ?   -2.2   0.3      0.37   1.3e+03     237     270 ..     248     281 ..     225     309 .. 0.47
   3 ?   -7.4   9.6         5   1.8e+04     209     278 ..     407     463 ..     373     479 .. 0.32

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 1.9e-05
  Pkinase_fungal 312 lrDaIkghrsLflkagiLHrDiSenNilitdskkegerkglLiDLDlakels 363
                     +++++ + + L+ k++++HrDi ++N+   d    ++ +  LiD+    ++s
      KOO21273.1 108 FANVVLAVEHLH-KCKLVHRDIKAENLCTIDV---NSTEYKLIDFGSCADTS 155
                     678999******.**************99965...45567788877666666 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 0.37
  Pkinase_fungal 237 rkvvsssssqelsskaevklkksesskkvekrsv 270
                     ++  +++   + +++a+ k kk+e+    ++++ 
      KOO21273.1 248 KAEKEKVAAAKAEKEAAAKAKKEEAAAAAKAKIE 281
                     2222222222233333333333333333322222 PP

  == domain 3  score: -7.4 bits;  conditional E-value: 5
  Pkinase_fungal 209 edveekdddiaeiRkgldvtkaekfrskrkvvsssssqe......lsskaevklkksesskkvekrsvdssv.stsk 278
                     ++        a ++k+  v ka k  +           +          ++ + k+ +  kk ++++ ds   ++++
      KOO21273.1 407 KEAA------AIAKKEEAVAKA-K-AK-----------TeeaaaaK-AAKAAAAKAAKDAKKAKNNKADSADsTPQQ 463
                     1111......122222222222.1.11...........01111111.111111111111111111111111112222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (483 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2810  (0.156729); expected 358.6 (0.02)
Passed bias filter:                      755  (0.0421105); expected 358.6 (0.02)
Passed Vit filter:                       273  (0.0152267); expected 17.9 (0.001)
Passed Fwd filter:                       121  (0.00674884); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 1.67u 0.42s 00:00:02.09 Elapsed: 00:00:00.54
# Mc/sec: 2691.40
//
Query:       KOO21274.1  [L=831]
Description: hypothetical protein Ctob_001717 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
     0.0083   16.1   0.1      0.016   15.2   0.1    1.4  1  Nucleotid_trans  Nucleotide-diphospho-sugar transferase


Domain annotation for each model (and alignments):
>> Nucleotid_trans  Nucleotide-diphospho-sugar transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.1   8.7e-07     0.016      61     124 ..     229     288 ..     207     292 .. 0.79

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 8.7e-07
  Nucleotid_trans  61 ellklGynvllsDvDvvWlrnpfpllkyedaDvlvssDsldgttadelknliNsGfffvratea 124
                      ++lk G nvl +DvD+v l ++ +ll+   a  l+ +D + +++ad +k  +N Gf+++  + a
       KOO21274.1 229 QFLKEGANVLSLDVDAVLLTDIYQLLR---APPLSEQDVILTQNADASK-SLNCGFVYFNRDAA 288
                      79************************4...6666667777766555555.66888888766555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (831 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       476  (0.0265492); expected 358.6 (0.02)
Passed bias filter:                      388  (0.0216409); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.61u 0.30s 00:00:00.90 Elapsed: 00:00:00.43
# Mc/sec: 5773.08
//
Query:       KOO21275.1  [L=466]
Description: calmodulin, partial [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    8.5e-29   96.9  21.3    1.6e-08   33.5   0.7    4.7  4  EF-hand_1      EF hand
    6.4e-22   77.8  13.1    1.3e-11   44.8   3.6    2.5  2  EF-hand_7      EF-hand domain pair
    4.1e-21   73.5  20.6    1.5e-06   27.4   0.5    4.6  4  EF-hand_5      EF hand
    7.2e-21   72.3  14.4    2.6e-07   30.0   0.6    4.7  4  EF-hand_6      EF-hand domain
    1.1e-19   70.0  13.7    3.7e-10   39.5   2.2    4.5  4  EF-hand_8      EF-hand domain pair
    3.9e-05   23.9   0.1      0.058   13.7   0.1    3.3  3  EF-hand_9      EF-hand domain
    0.00015   20.6   1.5    0.00025   19.9   1.5    1.2  1  DUF4764        Domain of unknown function (DUF4764)
     0.0037   17.4   0.2      0.013   15.6   0.0    1.8  2  zf-C2H2_aberr  Aberrant zinc-finger
  ------ inclusion threshold ------
      0.018   14.6   0.1      0.077   12.5   0.0    1.9  2  ERAP1_C        ERAP1-like C-terminal domain
       0.13   12.4   0.0          3    8.2   0.0    2.4  2  PMBR           Pseudomurein-binding repeat
        1.2    9.0   3.7        7.3    6.5   0.0    2.9  3  Caleosin       Caleosin related protein
        1.6    8.7   4.7        5.4    7.0   0.3    2.6  3  EF-hand_4      Cytoskeletal-regulatory complex EF hand
        3.5    7.4   4.1          8    6.3   0.4    2.4  2  PPR_1          PPR repeat


Domain annotation for each model (and alignments):
>> EF-hand_1  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.5   0.7   1.2e-11   1.6e-08       1      28 [.     298     325 ..     298     326 .. 0.93
   2 !   22.4   0.1   4.2e-08   5.8e-05       3      27 ..     363     387 ..     361     389 .. 0.92
   3 !   28.3   0.2   5.1e-10   7.1e-07       2      28 ..     399     425 ..     398     426 .. 0.95
   4 !   22.3   5.3   4.5e-08   6.2e-05       1      21 [.     438     458 ..     438     458 .. 0.96

  Alignments for each domain:
  == domain 1  score: 33.5 bits;  conditional E-value: 1.2e-11
                 HHHHHHHHHTTTSSSEEEHHHHHHHHHH CS
   EF-hand_1   1 elkeiFrefDkDgdGkIdfeEfkellkk 28 
                 +l+e+F++fDkDg+G+I+++E+++++++
  KOO21275.1 298 DLDEAFKLFDKDGSGTISLDELRTVFET 325
                 69*********************99875 PP

  == domain 2  score: 22.4 bits;  conditional E-value: 4.2e-08
                 HHHHHHHTTTSSSEEEHHHHHHHHH CS
   EF-hand_1   3 keiFrefDkDgdGkIdfeEfkellk 27 
                  +++re+D+D++G Id  Ef el+ 
  KOO21275.1 363 LKMMREVDTDNSGSIDPIEFAELMI 387
                 69*********************96 PP

  == domain 3  score: 28.3 bits;  conditional E-value: 5.1e-10
                 HHHHHHHHTTTSSSEEEHHHHHHHHHH CS
   EF-hand_1   2 lkeiFrefDkDgdGkIdfeEfkellkk 28 
                 l+e+Fr fD+Dg+G I+++E ke++k+
  KOO21275.1 399 LEEAFRFFDQDGSGSITRDEIKEAFKS 425
                 79***********************97 PP

  == domain 4  score: 22.3 bits;  conditional E-value: 4.5e-08
                 HHHHHHHHHTTTSSSEEEHHH CS
   EF-hand_1   1 elkeiFrefDkDgdGkIdfeE 21 
                 +++++++efD DgdG+IdfeE
  KOO21275.1 438 DIDDMIQEFDADGDGTIDFEE 458
                 699*****************9 PP

>> EF-hand_7  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.9   2.1   1.3e-12   1.8e-09       4      70 ..     299     386 ..     297     387 .. 0.85
   2 !   44.8   3.6   9.3e-15   1.3e-11       3      65 ..     398     458 ..     397     462 .. 0.94

  Alignments for each domain:
  == domain 1  score: 37.9 bits;  conditional E-value: 1.3e-12
   EF-hand_7   4 lkeaFkelDtdgdgyldkeellrllrkifqga....................gegsklsd.......eelellfkefDtdkdGvisfdEFlkly 70 
                 l eaFk++D+dg+g ++ +el+ +++ + q++                    +      +       e + ++++e+Dtd++G+i+  EF +l+
  KOO21275.1 299 LDEAFKLFDKDGSGTISLDELRTVFETFGQKTkptwdifsgriqnredqdamR------EqaerefdENILKMMREVDTDNSGSIDPIEFAELM 386
                 789***************************************99996666651......3222224366*****************99999988 PP

  == domain 2  score: 44.8 bits;  conditional E-value: 9.3e-15
   EF-hand_7   3 klkeaFkelDtdgdgyldkeellrllrkifqgagegsklsdeelellfkefDtdkdGvisfdE 65 
                 +l+eaF+ +D+dg+g+++++e+++++++   +a++g++l+++ ++++++efD d+dG+i+f+E
  KOO21275.1 398 VLEEAFRFFDQDGSGSITRDEIKEAFKSV--MAETGEELPEDDIDDMIQEFDADGDGTIDFEE 458
                 689*********************99975..44*****************************9 PP

>> EF-hand_5  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.4   0.5   1.1e-09   1.5e-06       1      24 [.     299     322 ..     299     323 .. 0.91
   2 !   16.0   0.0   4.3e-06    0.0059       3      25 .]     364     386 ..     362     386 .. 0.90
   3 !   20.8   0.7   1.3e-07   0.00018       1      23 [.     399     421 ..     399     424 .. 0.88
   4 !   18.6   4.4   6.6e-07   0.00091       1      20 [.     439     458 ..     439     461 .. 0.95

  Alignments for each domain:
  == domain 1  score: 27.4 bits;  conditional E-value: 1.1e-09
                 HHHHHHHH-SS-SSCE-HHHHHHH CS
   EF-hand_5   1 lkdtFqaiDlNgDGkIskeELktl 24 
                 l+++F+ +D++g+G+Is +EL+t+
  KOO21275.1 299 LDEAFKLFDKDGSGTISLDELRTV 322
                 5778******************96 PP

  == domain 2  score: 16.0 bits;  conditional E-value: 4.3e-06
                 HHHHHH-SS-SSCE-HHHHHHHH CS
   EF-hand_5   3 dtFqaiDlNgDGkIskeELktlv 25 
                 ++ +++D++++G I++ E+ +l+
  KOO21275.1 364 KMMREVDTDNSGSIDPIEFAELM 386
                 56899**************9987 PP

  == domain 3  score: 20.8 bits;  conditional E-value: 1.3e-07
                 HHHHHHHH-SS-SSCE-HHHHHH CS
   EF-hand_5   1 lkdtFqaiDlNgDGkIskeELkt 23 
                 l+++F+ +D +g+G I+++E k+
  KOO21275.1 399 LEEAFRFFDQDGSGSITRDEIKE 421
                 5778****************987 PP

  == domain 4  score: 18.6 bits;  conditional E-value: 6.6e-07
                 HHHHHHHH-SS-SSCE-HHH CS
   EF-hand_5   1 lkdtFqaiDlNgDGkIskeE 20 
                 ++d+ q++D++gDG+I++eE
  KOO21275.1 439 IDDMIQEFDADGDGTIDFEE 458
                 6899***************9 PP

>> EF-hand_6  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.0   0.6   1.9e-10   2.6e-07       2      27 ..     299     324 ..     298     330 .. 0.91
   2 !   10.2   0.0   0.00042      0.57       7      26 ..     367     386 ..     361     392 .. 0.83
   3 !   26.6   0.1   2.5e-09   3.4e-06       2      27 ..     399     424 ..     398     430 .. 0.93
   4 !   10.9   2.3   0.00025      0.35       5      21 ..     442     458 ..     438     458 .. 0.85

  Alignments for each domain:
  == domain 1  score: 30.0 bits;  conditional E-value: 1.9e-10
   EF-hand_6   2 lreaFklfDkdgdGkidaeElrkalr 27 
                 l+eaFklfDkdg+G+i+ +Elr ++ 
  KOO21275.1 299 LDEAFKLFDKDGSGTISLDELRTVFE 324
                 89********************9997 PP

  == domain 2  score: 10.2 bits;  conditional E-value: 0.00042
   EF-hand_6   7 klfDkdgdGkidaeElrkal 26 
                 ++ D+d++G+id+ E+  ++
  KOO21275.1 367 REVDTDNSGSIDPIEFAELM 386
                 678*************8865 PP

  == domain 3  score: 26.6 bits;  conditional E-value: 2.5e-09
   EF-hand_6   2 lreaFklfDkdgdGkidaeElrkalr 27 
                 l+eaF+ fD+dg+G+i+++E++ a++
  KOO21275.1 399 LEEAFRFFDQDGSGSITRDEIKEAFK 424
                 689*********************98 PP

  == domain 4  score: 10.9 bits;  conditional E-value: 0.00025
   EF-hand_6   5 aFklfDkdgdGkidaeE 21 
                   ++fD dgdG+id+eE
  KOO21275.1 442 MIQEFDADGDGTIDFEE 458
                 5579***********98 PP

>> EF-hand_8  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.0   0.2   2.9e-06     0.004      26      53 ..     297     324 ..     296     325 .. 0.90
   2 !   15.9   0.0   6.3e-06    0.0087      31      52 ..     365     386 ..     359     389 .. 0.92
   3 !   14.8   0.2   1.4e-05     0.019      28      53 ..     399     424 ..     389     425 .. 0.88
   4 !   39.5   2.2   2.7e-13   3.7e-10       2      47 ..     411     458 ..     410     458 .. 0.90

  Alignments for each domain:
  == domain 1  score: 17.0 bits;  conditional E-value: 2.9e-06
   EF-hand_8  26 eevdilfrefDtdgdGkisfeEFcvlle 53 
                 +++d+ f++fD dg+G+is++E   ++e
  KOO21275.1 297 HDLDEAFKLFDKDGSGTISLDELRTVFE 324
                 578999****************988776 PP

  == domain 2  score: 15.9 bits;  conditional E-value: 6.3e-06
   EF-hand_8  31 lfrefDtdgdGkisfeEFcvll 52 
                 ++re+Dtd++G i+  EF +l+
  KOO21275.1 365 MMREVDTDNSGSIDPIEFAELM 386
                 9*****************9998 PP

  == domain 3  score: 14.8 bits;  conditional E-value: 1.4e-05
   EF-hand_8  28 vdilfrefDtdgdGkisfeEFcvlle 53 
                 +++ fr fD+dg+G i+ +E  + ++
  KOO21275.1 399 LEEAFRFFDQDGSGSITRDEIKEAFK 424
                 6788****************988775 PP

  == domain 4  score: 39.5 bits;  conditional E-value: 2.7e-13
   EF-hand_8   2 kgkItreelrrilrilglkk..glseeevdilfrefDtdgdGkisfeE 47 
                 +g+Itr+e +++ ++++ +    l e+++d+++ efD dgdG+i+feE
  KOO21275.1 411 SGSITRDEIKEAFKSVMAETgeELPEDDIDDMIQEFDADGDGTIDFEE 458
                 79***********7765555788************************9 PP

>> EF-hand_9  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.0       1.9   2.6e+03      50      61 ..     124     135 ..     120     138 .. 0.78
   2 ?    5.6   0.0     0.015        20       2      30 ..     301     329 ..     299     335 .. 0.86
   3 !   13.7   0.1   4.2e-05     0.058       2      57 ..     401     458 ..     400     463 .. 0.91

  Alignments for each domain:
  == domain 1  score: -1.2 bits;  conditional E-value: 1.9
   EF-hand_9  50 dasvdldtflrv 61 
                 ++ v+ld++ r+
  KOO21275.1 124 KEYVNLDGYRRH 135
                 4789*****997 PP

  == domain 2  score: 5.6 bits;  conditional E-value: 0.015
   EF-hand_9   2 tvFevcDtqktGrVpvsrlidyLravtaq 30 
                   F+++D +  G++ + +l ++ +  +++
  KOO21275.1 301 EAFKLFDKDGSGTISLDELRTVFETFGQK 329
                 56****************99999988885 PP

  == domain 3  score: 13.7 bits;  conditional E-value: 4.2e-05
   EF-hand_9   2 tvFevcDtqktGrVpvsrlidyLravtaqdpees...eLeelakelDPdgedasvdldt 57 
                   F+ +D +  G ++  ++++  + v a++ ee+   ++++  +e+D dg  +++d++ 
  KOO21275.1 401 EAFRFFDQDGSGSITRDEIKEAFKSVMAETGEELpedDIDDMIQEFDADGD-GTIDFEE 458
                 56************************99988888888*************9.9***986 PP

>> DUF4764  Domain of unknown function (DUF4764)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.9   1.5   1.8e-07   0.00025     181     314 ..     105     236 ..      99     266 .. 0.64

  Alignments for each domain:
  == domain 1  score: 19.9 bits;  conditional E-value: 1.8e-07
     DUF4764 181 lsscsLrPktFkCq..tCeKSYIGkGGLARHyKLNPgHgelepevllsekangsvtlgkveertisltspelstpallseeg..aesaraglqngqsve 275
                  ss + rP+ F C+   C+K Y+   G  RH   N gHg l+p +    +a+gs++    +e t+s t   ++++a+   +   a+  r+ +q  +s  
  KOO21275.1 105 RSSSAPRPRPFVCRypGCGKEYVNLDGYRRHAN-NSGHGYLNPRKAGASTAQGSAA---PDEYTVSETMMGPAMMAVRAPQPpsAQ-LRTEVQMEES-- 196
                 577888*******7447**************97.*******************776...567777778888887777544442133.3555566666.. PP

     DUF4764 276 veeaLvsepengsssallg..serhkgpkrsrksealaeas 314
                   ++Lv++ e + ++a+    + r k +   r s++la+ +
  KOO21275.1 197 DGTNLVAKAEAELRAAMAAgdPVRIKAA-IARASATLAKMT 236
                 4577777777776655543113333333.344444444444 PP

>> zf-C2H2_aberr  Aberrant zinc-finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.0   9.5e-06     0.013     141     167 ..     115     141 ..     102     145 .. 0.90
   2 ?   -1.5   0.0       1.8   2.4e+03      49      77 ..     342     370 ..     336     395 .. 0.74

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 9.5e-06
  zf-C2H2_aberr 141 iyCripGCgkrfkslmaYkYhckkflh 167
                    + Cr pGCgk++ +l +Y+ h+++  h
     KOO21275.1 115 FVCRYPGCGKEYVNLDGYRRHANNSGH 141
                    89********************99877 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 1.8
  zf-C2H2_aberr  49 velentelleehlekehaakllellkele 77 
                     + e ++ ++e  e+e+ +++l++++e++
     KOO21275.1 342 QNREDQDAMREQAEREFDENILKMMREVD 370
                    55566778888888888888888887654 PP

>> ERAP1_C  ERAP1-like C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.1       1.8   2.5e+03     170     193 ..     209     231 ..     199     244 .. 0.76
   2 ?   12.5   0.0   5.6e-05     0.077     120     193 ..     375     449 ..     337     462 .. 0.75

  Alignments for each domain:
  == domain 1  score: -2.3 bits;  conditional E-value: 1.8
                 HHHHHHHS-HHHHHHHHHHHHC-S CS
     ERAP1_C 170 ycalaanggeaewdallerykdts 193
                 ++a++a+g++  ++a+++r  +++
  KOO21275.1 209 LRAAMAAGDPVRIKAAIARA-SAT 231
                 57888888888888888885.333 PP

  == domain 2  score: 12.5 bits;  conditional E-value: 5.6e-05
                 TS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHCSTT-S-HHHHHHHHHHHHHH.S...-HHHHHHHHHHHHC-S CS
     ERAP1_C 120 eshldaqlrslllsaacaagdpevveearklfkawlegddlippdlrwavycalaan.g...geaewdallerykdts 193
                  s +  ++ +l+++ +   +dp+v+eea + f++  +g  +i  d  + ++ +++a  g    e+++d +++++ d++
  KOO21275.1 375 GSIDPIEFAELMIRKMNEQDDPAVLEEAFRFFDQDGSG--SITRDEIKEAFKSVMAEtGeelPEDDIDDMIQEF-DAD 449
                 46677788899999999999***************666..8**************99557777779******99.655 PP

>> PMBR  Pseudomurein-binding repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.5   0.0      0.28   3.9e+02       1      11 [.     310     320 ..     310     324 .. 0.84
   2 ?    8.2   0.0    0.0022         3       1      17 [.     410     426 ..     410     431 .. 0.91

  Alignments for each domain:
  == domain 1  score: 1.5 bits;  conditional E-value: 0.28
        PMBR   1 gsgkisyeeyl 11 
                 gsg+is++e++
  KOO21275.1 310 GSGTISLDELR 320
                 69*******97 PP

  == domain 2  score: 8.2 bits;  conditional E-value: 0.0022
        PMBR   1 gsgkisyeeyldmasrv 17 
                 gsg+i+++e++++++ v
  KOO21275.1 410 GSGSITRDEIKEAFKSV 426
                 69************987 PP

>> Caleosin  Caleosin related protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.3   0.0       0.1   1.4e+02      93     120 ..     297     324 ..     273     339 .. 0.68
   2 ?    6.5   0.0    0.0053       7.3       4      33 ..     397     426 ..     394     431 .. 0.83
   3 ?   -2.3   0.8       2.6   3.6e+03      12      23 ..     445     456 ..     439     460 .. 0.81

  Alignments for each domain:
  == domain 1  score: 2.3 bits;  conditional E-value: 0.1
    Caleosin  93 qkfeeifskyakekkdaltlkevlellk 120
                 + ++e f+ ++k+ +++++l+e+ ++++
  KOO21275.1 297 HDLDEAFKLFDKDGSGTISLDELRTVFE 324
                 5566666666666666666666655543 PP

  == domain 2  score: 6.5 bits;  conditional E-value: 0.0053
    Caleosin   4 tvLqqHvaFfDrdkdGiiypldtyrgfral 33 
                 +vL++ + FfD+d  G i+  ++ ++f+++
  KOO21275.1 397 AVLEEAFRFFDQDGSGSITRDEIKEAFKSV 426
                 57888999**********999998888765 PP

  == domain 3  score: -2.3 bits;  conditional E-value: 2.6
    Caleosin  12 FfDrdkdGiiyp 23 
                  fD d dG+i +
  KOO21275.1 445 EFDADGDGTIDF 456
                 59******9976 PP

>> EF-hand_4  Cytoskeletal-regulatory complex EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.0       5.3   7.3e+03      45      65 ..     299     319 ..     294     329 .. 0.79
   2 ?    3.0   0.2     0.069        95       9      69 ..     330     386 ..     322     393 .. 0.65
   3 ?    7.0   0.3    0.0039       5.4      38      64 ..     432     458 ..     405     466 .] 0.82

  Alignments for each domain:
  == domain 1  score: -3.0 bits;  conditional E-value: 5.3
   EF-hand_4  45 lekiwdladidedgkldfeef 65 
                 l++ ++l d d  g++ ++e+
  KOO21275.1 299 LDEAFKLFDKDGSGTISLDEL 319
                 777888999999999998886 PP

  == domain 2  score: 3.0 bits;  conditional E-value: 0.069
   EF-hand_4   9 ikkyweifsglkpednkltgdkvapvlknskleedklekiwdladidedgkldfeefciam 69 
                  k  w+ifsg+ ++ +    d+ a   +  +  ++++ k+    d d+ g++d  ef+  m
  KOO21275.1 330 TKPTWDIFSGRIQNRE----DQDAMREQAEREFDENILKMMREVDTDNSGSIDPIEFAELM 386
                 5667999999754432....33333333444445556666677799999999988887554 PP

  == domain 3  score: 7.0 bits;  conditional E-value: 0.0039
   EF-hand_4  38 skleedklekiwdladidedgkldfee 64 
                  +l+ed ++ + +  d d dg++dfee
  KOO21275.1 432 EELPEDDIDDMIQEFDADGDGTIDFEE 458
                 47999999999999************9 PP

>> PPR_1  PPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.3   0.4    0.0058         8      22      32 ..     298     308 ..     298     308 .. 0.92
   2 ?    2.0   0.2      0.13   1.7e+02      23      32 ..     399     408 ..     398     408 .. 0.91

  Alignments for each domain:
  == domain 1  score: 6.3 bits;  conditional E-value: 0.0058
                 -HHHHHHHHHH CS
       PPR_1  22 rvdeAfelfde 32 
                 ++deAf+lfd+
  KOO21275.1 298 DLDEAFKLFDK 308
                 69*******97 PP

  == domain 2  score: 2.0 bits;  conditional E-value: 0.13
                 HHHHHHHHHH CS
       PPR_1  23 vdeAfelfde 32 
                 ++eAf++fd+
  KOO21275.1 399 LEEAFRFFDQ 408
                 79******97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (466 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       850  (0.0474092); expected 358.6 (0.02)
Passed bias filter:                      507  (0.0282782); expected 358.6 (0.02)
Passed Vit filter:                        60  (0.00334653); expected 17.9 (0.001)
Passed Fwd filter:                        13  (0.000725082); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 0.55u 0.29s 00:00:00.84 Elapsed: 00:00:00.42
# Mc/sec: 3327.55
//
Query:       KOO21276.1  [L=318]
Description: 3-hydroxyisobutyrate dehydrogenase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
      3e-29  101.7   0.4    7.4e-29  100.5   0.4    1.7  1  NAD_binding_11  NAD-binding of NADP-dependent 3-hydroxyisobut
    2.8e-06   27.3   0.1    5.6e-06   26.3   0.1    1.5  1  Hydrolase_like  HAD-hyrolase-like
    5.9e-06   26.5   0.0    6.4e-05   23.1   0.0    2.0  2  HAD_2           Haloacid dehalogenase-like hydrolase
  ------ inclusion threshold ------
      0.014   15.7   1.4      0.039   14.2   1.3    1.8  1  Hydrolase       haloacid dehalogenase-like hydrolase
        0.1   12.6   0.0       0.26   11.3   0.0    1.6  1  DUF2025         Protein of unknown function (DUF2025)


Domain annotation for each model (and alignments):
>> NAD_binding_11  NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  100.5   0.4   2.1e-32   7.4e-29       1     119 [.      30     148 ..      30     151 .. 0.98

  Alignments for each domain:
  == domain 1  score: 100.5 bits;  conditional E-value: 2.1e-32
  NAD_binding_11   1 GaGqavKlvnnlllainlaaasEalvlaekaGldpekvlevinassgrsnalenklpqrvlsrdfdpgFaldlmlKDlglalelareagaplpll 95 
                     G+G+avK+vnnll+  +l+ a+E+l++++ +G++p+++l++in+ssgrs  ++ +lp+ vl+++f  gF+l+lmlKD++ a++ a ++  ++ ll
      KOO21276.1  30 GSGHAVKAVNNLLNVGHLMLAGEGLLALRGFGVEPATALAAINGSSGRSLQTQVRLPTEVLTGQFGYGFELGLMLKDVRNATAIAGAHFPQATLL 124
                     9********************************************************************************************** PP

  NAD_binding_11  96 alaeqlyaaaaaegggdaDhsaiv 119
                      ++e+ +aaa +++g+ aD+++++
      KOO21276.1 125 PAVEAAVAAATERVGRTADYTEAL 148
                     ********************9986 PP

>> Hydrolase_like  HAD-hyrolase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.3   0.1   1.6e-09   5.6e-06       2      74 ..     242     313 ..     241     314 .. 0.90

  Alignments for each domain:
  == domain 1  score: 26.3 bits;  conditional E-value: 1.6e-09
                     .STTSSHHHHHHHHHH---.GGGEEEEES-TTTHHHHHHHCT-EE.EEESSSSS-TTTHHHHHHHHT---SEEES CS
  Hydrolase_like   2 lgKPepemydfalevlgsd.peevlmiGDrlatDiagAnnaGwks.vLVltGvtrpedleepehkptyvaddlae 74 
                     +g P+p m+ + +++lg++  ++v   GD+ + Di  A naG++  + Vl+G+ ++++l+  + ++t++++++++
      KOO21276.1 242 RGRPSPYMVHALMAKLGVEdVSKVAKAGDT-ERDIGEALNAGCRQaIGVLSGADSEAALR--ASGATVIVQNITK 313
                     589*************76659*********.***********9977**********9988..6689999999876 PP

>> HAD_2  Haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.4   0.0      0.08   2.9e+02       4      58 ..     152     205 ..     149     220 .. 0.87
   2 !   23.1   0.0   1.8e-08   6.4e-05     109     174 ..     218     284 ..     211     288 .. 0.90

  Alignments for each domain:
  == domain 1  score: 1.4 bits;  conditional E-value: 0.08
       HAD_2   4 DlDgTlldteeliiqafnelleeyglselseeelrkliglslrellrklgeseee 58 
                 D+ gT +d+  l++ +++e ++  gl e+se +++   g   +e++ +++ +++ 
  KOO21276.1 152 DMAGTTVDEGGLVYIVLRESMNAAGL-EVSEADMHPWHGAAKEEVVAHFAAKQRG 205
                 8999*****************99999.********************99998764 PP

  == domain 2  score: 23.1 bits;  conditional E-value: 1.8e-08
       HAD_2 109 veekleqlgiesyFdvivtsedvekkKPdpeviekaleklklkk.eeviyvGDsptDieaakkagik 174
                 ++  +++l+++++ d  ++++dv +  P+p ++++++ kl+++  ++v   GD+ +Di  a +ag++
  KOO21276.1 218 TQAIVDRLKLNEIVDGYISAQDVPRGRPSPYMVHALMAKLGVEDvSKVAKAGDTERDIGEALNAGCR 284
                 6678999***********************************87367777***************97 PP

>> Hydrolase  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   1.3   1.1e-05     0.039     146     210 .]     216     282 ..     100     282 .. 0.75

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 1.1e-05
                 HHHHHHHHHTT.GGGESEEEEHHCESSTTTSHHHHHHHHHHHT.STGGGEEEEESSHHHHHHHHHTT CS
                 xxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxx RF
   Hydrolase 146 etaeraanqlG.ddyfdaviasdietvakpspegkvaaireLq.gkpeevamVGDgvnDaaalaaAg 210
                  t +++ ++l  ++++d+ i++ ++  + psp +++a++ +L+ ++ ++va  GD+  D+  + +Ag
  KOO21276.1 216 LTTQAIVDRLKlNEIVDGYISAQDVPRGRPSPYMVHALMAKLGvEDVSKVAKAGDTERDIGEALNAG 282
                 35556777777778889999999999*****************666999**********97766665 PP

>> DUF2025  Protein of unknown function (DUF2025)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   7.2e-05      0.26      29      98 ..     167     242 ..     150     245 .. 0.78

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 7.2e-05
                 EEES-GGG-SSSS-GGG-EE....HHHHTE..EESSSSEEEE-TTHHHHHHHHT-HHHHT--HHHHHHTT--SSSS CS
     DUF2025  29 ivrfsedsfGldvaddsitp....asefvw..aveeaqlmtlkrerlellleqniddrlnlseplrvylrrsdlpe 98 
                 ++r s ++ Gl+v+++ + p    a+e v    + ++    ++   l+ l+ q i drl+l e +  y+  +d+p 
  KOO21276.1 167 VLRESMNAAGLEVSEADMHPwhgaAKEEVVahFAAKQRGADFAPSALAELTTQAIVDRLKLNEIVDGYISAQDVPR 242
                 46999999*********99944443344441123344456678899***************************995 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (318 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       413  (0.0230353); expected 358.6 (0.02)
Passed bias filter:                      308  (0.0171789); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.42u 0.24s 00:00:00.65 Elapsed: 00:00:00.38
# Mc/sec: 2539.20
//
Query:       KOO21277.1  [L=572]
Description: leucine-rich repeat-containing protein 40-like protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.2e-44  147.8  27.9    4.7e-09   35.9   0.4    9.3  9  LRR_8     Leucine rich repeat
      2e-39  132.9  31.0    4.2e-05   23.8   0.2   11.6 15  LRR_4     Leucine Rich repeats (2 copies)
    1.6e-14   52.7  12.4       0.74   10.0   0.1   11.9 12  LRR_6     Leucine Rich repeat
    1.9e-13   50.3  15.4     0.0022   17.5   0.8    6.4  6  LRR_9     Leucine-rich repeat
    1.3e-05   25.1  31.1        9.3    7.2   0.0   13.1 15  LRR_1     Leucine Rich Repeat


Domain annotation for each model (and alignments):
>> LRR_8  Leucine rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.8   0.3   0.00018      0.64      31      61 .]       2      31 ..       1      31 [. 0.95
   2 !   35.9   0.4   1.3e-12   4.7e-09       1      61 []      42     101 ..      42     101 .. 0.97
   3 !   26.5   0.2   1.1e-09   4.1e-06       3      61 .]      91     148 ..      89     148 .. 0.95
   4 !   11.7   0.6   4.5e-05      0.16      24      55 ..     155     183 ..     150     189 .. 0.75
   5 !   28.0   0.6   3.9e-10   1.4e-06       2      61 .]     201     256 ..     191     256 .. 0.94
   6 !   15.2   0.1   3.8e-06     0.013       3      61 .]     349     406 ..     347     406 .. 0.92
   7 ?   -0.6   0.1      0.32   1.1e+03      48      61 .]     416     429 ..     410     429 .. 0.84
   8 !   14.3   0.0   7.3e-06     0.026       1      42 [.     440     483 ..     440     487 .. 0.91
   9 !   30.6   0.0     6e-11   2.2e-07       1      61 []     488     547 ..     488     547 .. 0.98

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.00018
                E--SS---GGGGGGGTT--S-.EEE--SS-- CS
       LRR_8 31 dLsnNllttlspgafsgLpsLrsLdLsgNrL 61
                d s+N+l +l p+ +  L+ L++Ld ++NrL
  KOO21277.1  2 DVSQNELISL-PEELGTLEDLQQLDATNNRL 31
                789*******.9*****************98 PP

  == domain 2  score: 35.9 bits;  conditional E-value: 1.3e-12
                 TT-SEEE-TTS--SEE-TTSSTT-TT--EEE--SS---GGGGGGGTT--S-.EEE--SS-- CS
       LRR_8   1 pnLtsLdLsnNrltslddeaFkglsnLkvLdLsnNllttlspgafsgLpsLrsLdLsgNrL 61 
                 p L++L+L +N+lt l+    ++l+ L  L  s+N lt + p +f+gL  L +LdLs+NrL
  KOO21277.1  42 PALKKLMLAHNQLTQLPELGAFNLPPLVQLVASHNALTAV-PPSFAGLIYLVELDLSHNRL 101
                 67****************99999*****************.9*****************98 PP

  == domain 3  score: 26.5 bits;  conditional E-value: 1.1e-09
                 -SEEE-TTS--SEE-TTSSTT-TT--EEE--SS---GGGGGGGTT--S-.EEE--SS-- CS
       LRR_8   3 LtsLdLsnNrltslddeaFkglsnLkvLdLsnNllttlspgafsgLpsLrsLdLsgNrL 61 
                 L +LdLs+Nrl  l+ +    +++Lk+L L  N+l  l ++  ++ p L sLd s NrL
  KOO21277.1  91 LVELDLSHNRLGTLPSGLGG-MRALKTLMLAKNELIELPADLVQSPPPLVSLDASENRL 148
                 889***********999877.************************************98 PP

  == domain 4  score: 11.7 bits;  conditional E-value: 4.5e-05
                 -TT--EEE--SS---GGGGGGGTT--S-.EEE CS
       LRR_8  24 lsnLkvLdLsnNllttlspgafsgLpsLrsLd 55 
                 +++L++L L nN+l++l+   ++g++ L++L 
  KOO21277.1 155 VPSLRTLLLANNRLESLE---LQGCAGLQELS 183
                 689999999999999997...55555555554 PP

  == domain 5  score: 28.0 bits;  conditional E-value: 3.9e-10
                 T-SEEE-TTS--SEE-TTSSTT-TT--EEE--SS---GGGGGGGTT--S-.EEE--SS-- CS
       LRR_8   2 nLtsLdLsnNrltslddeaFkglsnLkvLdLsnNllttlspgafsgLpsLrsLdLsgNrL 61 
                 +L ++dLs+N+lt++++ +     +L+ LdLs+N+l+ + p  + +L sL +L LsgN+L
  KOO21277.1 201 QLATVDLSSNKLTEVEQLSAC--ASLTRLDLSCNELREV-PPLLGNL-SLNKLALSGNPL 256
                 799************987665..9***************.8999999.**********97 PP

  == domain 6  score: 15.2 bits;  conditional E-value: 3.8e-06
                 -SEEE-TTS--SEE-TTSSTT-TT--EEE--SS---GGGGGGGTT--S-.EEE--SS-- CS
       LRR_8   3 LtsLdLsnNrltslddeaFkglsnLkvLdLsnNllttlspgafsgLpsLrsLdLsgNrL 61 
                 L+++   +N+l +l+d+     ++L+ Ld s N l+ l p  + ++p L+   + +N+L
  KOO21277.1 349 LHTILAASNQLRALPDGLSGLIPGLRCLDVSKNALSLL-PFDLGSCPELQAVRVAHNQL 406
                 5566667899****************************.9*****************98 PP

  == domain 7  score: -0.6 bits;  conditional E-value: 0.32
                 --S-.EEE--SS-- CS
       LRR_8  48 LpsLrsLdLsgNrL 61 
                 L+sL++L+ ++N L
  KOO21277.1 416 LSSLTELNADRNVL 429
                 78999999999965 PP

  == domain 8  score: 14.3 bits;  conditional E-value: 7.3e-06
                 TT-SEEE-TTS--SEE-TTSSTT..-TT--EEE--SS---GGGG CS
       LRR_8   1 pnLtsLdLsnNrltslddeaFkg..lsnLkvLdLsnNllttlsp 42 
                 p+L++++L+ N+lt+ + ++  g     L++LdL++N+l  l p
  KOO21277.1 440 PRLRTVSLCANKLTAASLHMPGGgaAAPLEYLDLGENRLGALPP 483
                 79********************977789***********98877 PP

  == domain 9  score: 30.6 bits;  conditional E-value: 6e-11
                 TT-SEEE-TTS--SEE-TTSSTT-TT--EEE--SS---GGGGGGGTT--S-.EEE--SS-- CS
       LRR_8   1 pnLtsLdLsnNrltslddeaFkglsnLkvLdLsnNllttlspgafsgLpsLrsLdLsgNrL 61 
                 p+L++++++ N + +l+ e    l++L++Ld+s+N  t l p  ++ Lp L+ L++ gN +
  KOO21277.1 488 PRLREVHVQQNGIRELPVEHLMPLQKLQTLDISCNDVTML-PAELALLPVLQNLTIVGNAI 547
                 79**************************************.9*****************87 PP

>> LRR_4  Leucine Rich repeats (2 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.2   0.1   0.00094       3.4       7      36 ..       2      31 ..       2      37 .. 0.80
   2 !   23.8   0.2   1.2e-08   4.2e-05       3      42 ..      21      60 ..      19      67 .. 0.92
   3 !   15.6   0.0   4.4e-06     0.016       1      37 [.      42      79 ..      42      83 .. 0.82
   4 !   16.7   0.0     2e-06    0.0071       6      39 ..      71     104 ..      68     109 .. 0.86
   5 !   19.9   0.1     2e-07   0.00072       3      36 ..      91     125 ..      91     132 .. 0.86
   6 !    5.7   0.1    0.0058        21       3      39 ..     114     151 ..     112     155 .. 0.83
   7 !   11.4   2.4   9.3e-05      0.34       3      40 ..     138     172 ..     136     174 .. 0.80
   8 !   14.5   1.7   9.9e-06     0.036       1      29 [.     156     183 ..     156     219 .. 0.81
   9 !   23.6   0.2   1.4e-08     5e-05       3      42 ..     202     240 ..     200     242 .. 0.88
  10 !   16.7   0.9     2e-06    0.0071       2      37 ..     223     257 ..     222     262 .. 0.89
  11 !   10.8   0.2   0.00015      0.54       3      39 ..     349     383 ..     347     387 .. 0.85
  12 !   15.8   0.0     4e-06     0.014       1      40 [.     371     410 ..     371     418 .. 0.92
  13 !   10.3   0.0   0.00021      0.74       2      37 ..     418     453 ..     417     457 .. 0.89
  14 !   17.1   0.0   1.5e-06    0.0054       3      39 ..     468     503 ..     468     508 .. 0.89
  15 !   13.8   0.2   1.6e-05     0.059       1      39 [.     512     550 ..     512     554 .. 0.89

  Alignments for each domain:
  == domain 1  score: 8.2 bits;  conditional E-value: 0.00094
                E--SS---E-S-.HHH-TT--EEE-.-S--- CS
       LRR_4  7 dLsnNqltdipl.leklpnLkeLdLsgNnli 36
                d s+N l ++p  l+ l +L++Ld   Nn++
  KOO21277.1  2 DVSQNELISLPEeLGTLEDLQQLDA-TNNRL 31
                578999999***8778********9.55566 PP

  == domain 2  score: 23.8 bits;  conditional E-value: 1.2e-08
                --EEE--SS---E-S-.HHH-TT--EEE-.-S-----GGGG CS
       LRR_4  3 LevLdLsnNqltdipl.leklpnLkeLdLsgNnlitdldeL 42
                L+ Ld  nN+l+ +p+ l+ lp Lk+L L +N ++t+l+eL
  KOO21277.1 21 LQQLDATNNRLRVLPPvLAELPALKKLMLAHN-QLTQLPEL 60
                899*************9889*******99777.****9987 PP

  == domain 3  score: 15.6 bits;  conditional E-value: 4.4e-06
                SS--EEE--SS---E-S-HH..H-TT--EEE-.-S---- CS
       LRR_4  1 pnLevLdLsnNqltdiplle..klpnLkeLdLsgNnlit 37
                p L++L L++Nqlt +p l+  +lp L +L  s+N  +t
  KOO21277.1 42 PALKKLMLAHNQLTQLPELGafNLPPLVQLVASHN-ALT 79
                67****************77777*******55777.544 PP

  == domain 4  score: 16.7 bits;  conditional E-value: 2e-06
                 EE--SS---E-S-.HHH-TT--EEE-.-S-----G CS
       LRR_4   6 LdLsnNqltdipl.leklpnLkeLdLsgNnlitdl 39 
                 L  s+N lt +p+ +++l  L eLdLs+N ++++l
  KOO21277.1  71 LVASHNALTAVPPsFAGLIYLVELDLSHN-RLGTL 104
                 899********999999*********999.77666 PP

  == domain 5  score: 19.9 bits;  conditional E-value: 2e-07
                 --EEE--SS---E-S-.HHH-TT--EEE-.-S--- CS
       LRR_4   3 LevLdLsnNqltdipl.leklpnLkeLdLsgNnli 36 
                 L +LdLs+N+l ++p+ l+++  Lk+L L  N li
  KOO21277.1  91 LVELDLSHNRLGTLPSgLGGMRALKTLMLAKNELI 125
                 668*************9999*******99888333 PP

  == domain 6  score: 5.7 bits;  conditional E-value: 0.0058
                 --EEE--SS---E-S-.HHH.-TT--EEE-.-S-----G CS
       LRR_4   3 LevLdLsnNqltdipl.lek.lpnLkeLdLsgNnlitdl 39 
                 L++L L+ N l ++p  l +  p L +Ld s+N ++++l
  KOO21277.1 114 LKTLMLAKNELIELPAdLVQsPPPLVSLDASEN-RLRRL 151
                 99**************97764777999999888.77665 PP

  == domain 7  score: 11.4 bits;  conditional E-value: 9.3e-05
                 --EEE--SS---E-S-HHH-TT--EEE-.-S-----GG CS
       LRR_4   3 LevLdLsnNqltdiplleklpnLkeLdLsgNnlitdld 40 
                 L +Ld s N+l+ + l  + p+L++L L  Nn++++l+
  KOO21277.1 138 LVSLDASENRLRRLRL--SVPSLRTL-LLANNRLESLE 172
                 5679999999999777..46999999.87888999983 PP

  == domain 8  score: 14.5 bits;  conditional E-value: 9.9e-06
                 SS--EEE--SS---E-S-HHH-TT--EEE CS
       LRR_4   1 pnLevLdLsnNqltdiplleklpnLkeLd 29 
                 p+L++L L+nN+l +++l + +  L+eL+
  KOO21277.1 156 PSLRTLLLANNRLESLELQG-CAGLQELS 183
                 79*************99977.88888886 PP

  == domain 9  score: 23.6 bits;  conditional E-value: 1.4e-08
                 --EEE--SS---E-S-HHH-TT--EEE-.-S-----GGGG CS
       LRR_4   3 LevLdLsnNqltdiplleklpnLkeLdLsgNnlitdldeL 42 
                 L ++dLs+N+lt+++ l+ + +L+ LdL ++n ++ +++L
  KOO21277.1 202 LATVDLSSNKLTEVEQLSACASLTRLDL-SCNELREVPPL 240
                 5589************999*********.76699888776 PP

  == domain 10  score: 16.7 bits;  conditional E-value: 2e-06
                 S--EEE--SS---E-S-HHH-TT--EEE-.-S---- CS
       LRR_4   2 nLevLdLsnNqltdiplleklpnLkeLdLsgNnlit 37 
                 +L+ LdLs N l+++p+l ++ +L +L LsgN +++
  KOO21277.1 223 SLTRLDLSCNELREVPPLLGNLSLNKLALSGN-PLR 257
                 79******99*******888************.655 PP

  == domain 11  score: 10.8 bits;  conditional E-value: 0.00015
                 --EEE--SS---E-S-.HHH.-TT--EEE-.-S-----G CS
       LRR_4   3 LevLdLsnNqltdipl.lek.lpnLkeLdLsgNnlitdl 39 
                 L ++  ++Nql+ +p  l++ +p L+ Ld+s N     l
  KOO21277.1 349 LHTILAASNQLRALPDgLSGlIPGLRCLDVSKN----AL 383
                 667777899********9999*********999....55 PP

  == domain 12  score: 15.8 bits;  conditional E-value: 4e-06
                 SS--EEE--SS---E-S-.HHH-TT--EEE-.-S-----GG CS
       LRR_4   1 pnLevLdLsnNqltdipl.leklpnLkeLdLsgNnlitdld 40 
                 p L+ Ld s N l+ +p+ l+++p L+ + + +N +++dl 
  KOO21277.1 371 PGLRCLDVSKNALSLLPFdLGSCPELQAVRVAHN-QLRDLG 410
                 68****************9999*********888.999984 PP

  == domain 13  score: 10.3 bits;  conditional E-value: 0.00021
                 S--EEE--SS---E-S-.HHH-TT--EEE-.-S---- CS
       LRR_4   2 nLevLdLsnNqltdipl.leklpnLkeLdLsgNnlit 37 
                 +L++L+   N l ++p  l+ +p L++++L  N ++t
  KOO21277.1 418 SLTELNADRNVLGEVPAaLWLCPRLRTVSLCAN-KLT 453
                 7*****************999*********788.554 PP

  == domain 14  score: 17.1 bits;  conditional E-value: 1.5e-06
                 --EEE--SS---E-S-HHH-TT--EEE-.-S-----G CS
       LRR_4   3 LevLdLsnNqltdiplleklpnLkeLdLsgNnlitdl 39 
                 Le+LdL+ N+l  +p+l+ +p L+e+++ +N  i+ l
  KOO21277.1 468 LEYLDLGENRLGALPPLALFPRLREVHVQQN-GIREL 503
                 89***************99*********666.77766 PP

  == domain 15  score: 13.8 bits;  conditional E-value: 1.6e-05
                 SS--EEE--SS---E-S-.HHH-TT--EEE-.-S-----G CS
       LRR_4   1 pnLevLdLsnNqltdipl.leklpnLkeLdLsgNnlitdl 39 
                 ++L++Ld+s N +t +p  l+ lp L+ L++ gN  i+++
  KOO21277.1 512 QKLQTLDISCNDVTMLPAeLALLPVLQNLTIVGN-AIRSI 550
                 69*******99*******7666*********999.77777 PP

>> LRR_6  Leucine Rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.1   0.0      0.32   1.1e+03       5      16 ..      44      55 ..      42      55 .. 0.90
   2 !    8.0   0.1   0.00091       3.3       4      16 ..      90     102 ..      88     103 .. 0.89
   3 ?    2.5   0.0     0.055     2e+02       2      13 ..     165     176 ..     164     180 .. 0.88
   4 ?    2.9   0.0     0.039   1.4e+02       5      16 ..     202     213 ..     199     214 .. 0.87
   5 !   10.0   0.1   0.00021      0.74       2      15 ..     221     234 ..     220     235 .. 0.89
   6 ?    3.0   0.2     0.037   1.3e+02       2      15 ..     243     256 ..     242     258 .. 0.87
   7 ?    2.4   0.0     0.059   2.1e+02       5      15 ..     373     383 ..     371     384 .. 0.87
   8 ?    3.4   0.0     0.027        98       2      19 ..     393     410 ..     392     411 .. 0.87
   9 ?   -3.2   0.2       3.6   1.3e+04       3       9 ..     417     423 ..     416     423 .. 0.86
  10 ?    2.6   0.0     0.049   1.8e+02       5      16 ..     468     479 ..     466     480 .. 0.91
  11 ?   -0.9   0.0      0.67   2.4e+03       4      15 ..     489     500 ..     488     501 .. 0.88
  12 !    9.8   0.0   0.00025      0.88       3      16 ..     512     525 ..     510     525 .. 0.90

  Alignments for each domain:
  == domain 1  score: 0.1 bits;  conditional E-value: 0.32
       LRR_6  5 LteLdLsgNdIg 16
                L++L L++N+++
  KOO21277.1 44 LKKLMLAHNQLT 55
                89999*****96 PP

  == domain 2  score: 8.0 bits;  conditional E-value: 0.00091
       LRR_6   4 hLteLdLsgNdIg 16 
                 +L eLdLs+N +g
  KOO21277.1  90 YLVELDLSHNRLG 102
                 699*******998 PP

  == domain 3  score: 2.5 bits;  conditional E-value: 0.055
       LRR_6   2 nthLteLdLsgN 13 
                 n+ L++L+L+g+
  KOO21277.1 165 NNRLESLELQGC 176
                 999*******99 PP

  == domain 4  score: 2.9 bits;  conditional E-value: 0.039
       LRR_6   5 LteLdLsgNdIg 16 
                 L ++dLs+N+++
  KOO21277.1 202 LATVDLSSNKLT 213
                 6689*****997 PP

  == domain 5  score: 10.0 bits;  conditional E-value: 0.00021
       LRR_6   2 nthLteLdLsgNdI 15 
                 + +Lt LdLs+N++
  KOO21277.1 221 CASLTRLDLSCNEL 234
                 789*********97 PP

  == domain 6  score: 3.0 bits;  conditional E-value: 0.037
       LRR_6   2 nthLteLdLsgNdI 15 
                 n +L +L LsgN +
  KOO21277.1 243 NLSLNKLALSGNPL 256
                 899*********87 PP

  == domain 7  score: 2.4 bits;  conditional E-value: 0.059
       LRR_6   5 LteLdLsgNdI 15 
                 L+ Ld+s N +
  KOO21277.1 373 LRCLDVSKNAL 383
                 99*******87 PP

  == domain 8  score: 3.4 bits;  conditional E-value: 0.027
       LRR_6   2 nthLteLdLsgNdIgDeG 19 
                 ++ L+++ +++N++ D G
  KOO21277.1 393 CPELQAVRVAHNQLRDLG 410
                 677999*********977 PP

  == domain 9  score: -3.2 bits;  conditional E-value: 3.6
       LRR_6   3 thLteLd 9  
                 ++LteL+
  KOO21277.1 417 SSLTELN 423
                 79***98 PP

  == domain 10  score: 2.6 bits;  conditional E-value: 0.049
       LRR_6   5 LteLdLsgNdIg 16 
                 L++LdL  N +g
  KOO21277.1 468 LEYLDLGENRLG 479
                 89*******998 PP

  == domain 11  score: -0.9 bits;  conditional E-value: 0.67
       LRR_6   4 hLteLdLsgNdI 15 
                  L+e++++ N+I
  KOO21277.1 489 RLREVHVQQNGI 500
                 69********99 PP

  == domain 12  score: 9.8 bits;  conditional E-value: 0.00025
       LRR_6   3 thLteLdLsgNdIg 16 
                 ++L++Ld+s+Nd++
  KOO21277.1 512 QKLQTLDISCNDVT 525
                 79*********986 PP

>> LRR_9  Leucine-rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5   0.8   6.1e-07    0.0022      48     120 ..       2      73 ..       1      93 [. 0.78
   2 !    9.7   0.0   0.00016      0.57      47     103 ..      94     151 ..      86     154 .. 0.90
   3 !    4.0   0.1    0.0088        31      85     115 ..     153     182 ..     149     186 .. 0.78
   4 !    8.6   0.1   0.00034       1.2      60     125 ..     196     256 ..     192     263 .. 0.54
   5 !    5.7   0.0    0.0027       9.7      64     104 ..     347     387 ..     333     409 .. 0.78
   6 !   10.3   0.2    0.0001      0.38      47     128 ..     471     550 ..     462     558 .. 0.76

  Alignments for each domain:
  == domain 1  score: 17.5 bits;  conditional E-value: 6.1e-07
       LRR_9  48 dlsdndirkl.dgfPllkrlktlllnnnrivriaegleevlPnleelvltnnelqeladldPlaslkklellsl 120
                 d+s n++  l +++  l+ l+ l   nnr++ + + l   lP l++l+l++n+l++l +l    +l+ l  l  
  KOO21277.1   2 DVSQNELISLpEELGTLEDLQQLDATNNRLRVLPPVL-AELPALKKLMLAHNQLTQLPELGA-FNLPPLVQLVA 73 
                 8999999988689****************86665555.569****************99754.34555555544 PP

  == domain 2  score: 9.7 bits;  conditional E-value: 0.00016
       LRR_9  47 idlsdndirkl.dgfPllkrlktlllnnnrivriaegleevlPnleelvltnnelqel 103
                 +dls n +  l  g+  ++ lktl+l++n ++ +  +l ++ P l +l  ++n+l++l
  KOO21277.1  94 LDLSHNRLGTLpSGLGGMRALKTLMLAKNELIELPADLVQSPPPLVSLDASENRLRRL 151
                 68888988888458999*******************************9999999987 PP

  == domain 3  score: 4.0 bits;  conditional E-value: 0.0088
       LRR_9  85 evlPnleelvltnnelqeladldPlaslkkl 115
                  ++P+l++l+l+nn+l++l +l+  a l++l
  KOO21277.1 153 LSVPSLRTLLLANNRLESL-ELQGCAGLQEL 182
                 579*************998.45666666665 PP

  == domain 4  score: 8.6 bits;  conditional E-value: 0.00034
       LRR_9  60 fPllkrlktlllnnnrivriaegleevlPnleelvltnnelqeladldPlaslkklellsllknpv 125
                 +P+l +l t+ l++n+++ ++ +l+ +  +l+ l l+ ne   l ++ Pl    +l+ l+l  np+
  KOO21277.1 196 MPYLAQLATVDLSSNKLTEVE-QLS-ACASLTRLDLSCNE---LREVPPLLGNLSLNKLALSGNPL 256
                 566666666666666666553.232.33455555555443...33445555555555555555555 PP

  == domain 5  score: 5.7 bits;  conditional E-value: 0.0027
       LRR_9  64 krlktlllnnnrivriaegleevlPnleelvltnnelqela 104
                 + l+t+l ++n+++ + +gl+  +P l++l +++n l  l 
  KOO21277.1 347 ETLHTILAASNQLRALPDGLSGLIPGLRCLDVSKNALSLLP 387
                 67999******************************998664 PP

  == domain 6  score: 10.3 bits;  conditional E-value: 0.0001
       LRR_9  47 idlsdndirkldgfPllkrlktlllnnnrivriaegleevlPnleelvltnnelqeladldPlaslkklellsllknpvtnk 128
                 +dl +n +  l  + l+ rl+ + +++n i+ +  +    l +l++l ++ n ++ l     la l+ l++l+++ n++ + 
  KOO21277.1 471 LDLGENRLGALPPLALFPRLREVHVQQNGIRELPVEHLMPLQKLQTLDISCNDVTMLPA--ELALLPVLQNLTIVGNAIRSI 550
                 67888888888888888888888888888888876666677788888888888888876..688888888888888877654 PP

>> LRR_1  Leucine Rich Repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.0       4.9   1.8e+04       6      16 ..       2      12 ..       1      13 [. 0.84
   2 ?    1.0   0.0       0.3   1.1e+03       2      17 ..      21      36 ..      20      41 .. 0.80
   3 ?    2.4   0.0       0.1   3.7e+02       2      16 ..      44      58 ..      43      65 .. 0.90
   4 !    7.2   0.0    0.0026       9.3       2      17 ..      91     106 ..      90     111 .. 0.80
   5 ?    0.4   0.0      0.45   1.6e+03       2      20 ..     114     132 ..     113     135 .. 0.85
   6 ?    3.5   1.2     0.043   1.5e+02       2      18 ..     158     174 ..     138     192 .. 0.76
   7 ?    0.1   0.0       0.6   2.1e+03       2      13 ..     202     213 ..     201     221 .. 0.73
   8 ?    5.0   1.0     0.014        50       1      22 [.     223     243 ..     223     249 .. 0.79
   9 ?    0.3   0.1      0.51   1.8e+03       2      14 ..     246     258 ..     244     275 .. 0.71
  10 ?    1.3   0.2      0.24   8.5e+02       2      20 ..     373     390 ..     372     398 .. 0.77
  11 ?   -1.2   0.0       1.6   5.6e+03       1      17 [.     418     433 ..     418     439 .. 0.75
  12 ?   -3.9   0.0         5   1.8e+04       1      12 [.     441     452 ..     441     456 .. 0.78
  13 ?    4.6   0.0     0.019        68       2      18 ..     468     484 ..     467     487 .. 0.86
  14 ?   -1.1   0.0       1.4     5e+03       1      20 [.     489     508 ..     489     511 .. 0.82
  15 ?    4.8   0.0     0.016        59       1      16 [.     513     528 ..     513     543 .. 0.83

  Alignments for each domain:
  == domain 1  score: -2.7 bits;  conditional E-value: 4.9
       LRR_1  6 dLsnnpllglp 16
                d+s+n l++lp
  KOO21277.1  2 DVSQNELISLP 12
                8999*998876 PP

  == domain 2  score: 1.0 bits;  conditional E-value: 0.3
       LRR_1  2 LrhLdLsnnpllglpp 17
                L+ Ld +nn+l  lpp
  KOO21277.1 21 LQQLDATNNRLRVLPP 36
                889********66655 PP

  == domain 3  score: 2.4 bits;  conditional E-value: 0.1
       LRR_1  2 LrhLdLsnnpllglp 16
                L++L L +n+l++lp
  KOO21277.1 44 LKKLMLAHNQLTQLP 58
                99*********9997 PP

  == domain 4  score: 7.2 bits;  conditional E-value: 0.0026
       LRR_1   2 LrhLdLsnnpllglpp 17 
                 L +LdLs+n+l+ lp+
  KOO21277.1  91 LVELDLSHNRLGTLPS 106
                 779********66665 PP

  == domain 5  score: 0.4 bits;  conditional E-value: 0.45
       LRR_1   2 LrhLdLsnnpllglppnsf 20 
                 L++L L  n l+ lp++  
  KOO21277.1 114 LKTLMLAKNELIELPADLV 132
                 99*********99998765 PP

  == domain 6  score: 3.5 bits;  conditional E-value: 0.043
       LRR_1   2 LrhLdLsnnpllglppn 18 
                 Lr+L L nn+l++l+ +
  KOO21277.1 158 LRTLLLANNRLESLELQ 174
                 67777777777555443 PP

  == domain 7  score: 0.1 bits;  conditional E-value: 0.6
       LRR_1   2 LrhLdLsnnpll 13 
                 L + dLs+n l+
  KOO21277.1 202 LATVDLSSNKLT 213
                 5578*****994 PP

  == domain 8  score: 5.0 bits;  conditional E-value: 0.014
       LRR_1   1 nLrhLdLsnnpllglppnsfqn 22 
                 +L++LdLs n l +  p+ + n
  KOO21277.1 223 SLTRLDLSCNEL-REVPPLLGN 243
                 69*********9.666666655 PP

  == domain 9  score: 0.3 bits;  conditional E-value: 0.51
       LRR_1   2 LrhLdLsnnpllg 14 
                 L +L Ls+npl  
  KOO21277.1 246 LNKLALSGNPLRT 258
                 556669****933 PP

  == domain 10  score: 1.3 bits;  conditional E-value: 0.24
       LRR_1   2 LrhLdLsnnpllglppnsf 20 
                 Lr Ld+s n l +l+p ++
  KOO21277.1 373 LRCLDVSKNAL-SLLPFDL 390
                 8999*999999.5665554 PP

  == domain 11  score: -1.2 bits;  conditional E-value: 1.6
       LRR_1   1 nLrhLdLsnnpllglpp 17 
                 +L++L+  +n l g  p
  KOO21277.1 418 SLTELNADRNVL-GEVP 433
                 699***999998.4444 PP

  == domain 12  score: -3.9 bits;  conditional E-value: 5
       LRR_1   1 nLrhLdLsnnpl 12 
                 +Lr+  L+ n l
  KOO21277.1 441 RLRTVSLCANKL 452
                 599999987776 PP

  == domain 13  score: 4.6 bits;  conditional E-value: 0.019
       LRR_1   2 LrhLdLsnnpllglppn 18 
                 L++LdL+ n+l+ lpp 
  KOO21277.1 468 LEYLDLGENRLGALPPL 484
                 9**********888875 PP

  == domain 14  score: -1.1 bits;  conditional E-value: 1.4
       LRR_1   1 nLrhLdLsnnpllglppnsf 20 
                 +Lr+ ++ +n +  lp +++
  KOO21277.1 489 RLREVHVQQNGIRELPVEHL 508
                 699*******9988887765 PP

  == domain 15  score: 4.8 bits;  conditional E-value: 0.016
       LRR_1   1 nLrhLdLsnnpllglp 16 
                 +L++Ld+s n  + lp
  KOO21277.1 513 KLQTLDISCNDVTMLP 528
                 7*********975555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (572 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       247  (0.0137766); expected 358.6 (0.02)
Passed bias filter:                      213  (0.0118802); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.56u 0.26s 00:00:00.82 Elapsed: 00:00:00.42
# Mc/sec: 4077.12
//
Query:       KOO21278.1  [L=1007]
Description: hypothetical protein Ctob_001713 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
     0.0023   18.1   0.0     0.0041   17.3   0.0    1.4  1  VIT       Vault protein inter-alpha-trypsin domain


Domain annotation for each model (and alignments):
>> VIT  Vault protein inter-alpha-trypsin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   0.0   2.3e-07    0.0041      13     109 ..      35     129 ..      24     131 .. 0.86

  Alignments for each domain:
  == domain 1  score: 17.3 bits;  conditional E-value: 2.3e-07
         VIT  13 rvarvtvtqtfvNpss.eakeakYvfplpe.gaavsgfemeiggkvikgevkekeearkeyeeavaqgktaglleqeepdvftvsvgnippgeevtvel 109
                 r++ +t++ t+vN++  +++ea   fplp+ +a v+gfe++  g  i +   +k++a ++  +  ++g+ ++ + + +  v++v++ ++  +e  +++l
  KOO21278.1  35 RIVLITMRLTIVNDAVcRDIEAALRFPLPDsDALVCGFELD--G--IAAISVPKAKAAEITYKEMEKGRAVATAAAVQGAVYEVTIFPLLYNEPKQLTL 129
                 6777899999*****8888*********963799****766..5..9999999999999999999*********************9999998888877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1007 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       385  (0.0214736); expected 358.6 (0.02)
Passed bias filter:                      283  (0.0157845); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.64u 0.27s 00:00:00.91 Elapsed: 00:00:00.42
# Mc/sec: 7217.14
//
Query:       KOO21279.1  [L=235]
Description: conserved membrane protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
  ------ inclusion threshold ------
      0.036   13.7  17.9       0.68    9.5  18.0    2.5  1  TauE             Sulfite exporter TauE/SafE
      0.098   12.9   0.3       0.31   11.3   0.3    1.8  1  HemY_N           HemY protein N-terminus
        0.1   12.6   2.4        0.1   12.6   0.9    1.8  2  SK_channel       Calcium-activated SK potassium channel
        5.3    6.7   8.5        9.3    5.9   2.2    2.6  3  DUF4131          Domain of unknown function (DUF4131)


Domain annotation for each model (and alignments):
>> TauE  Sulfite exporter TauE/SafE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5  18.0   0.00015      0.68      64     211 ..      12     174 ..       2     210 .. 0.70

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 0.00015
        TauE  64 rlllllllgsliGallGallllllpse....llkllfgvlllllallmllrkkrsrakgrerrptaillvligglvGllsGllGiGgGfllvpllllll 158
                 ++ l+ ++g++iG+ + +++ ++l +     ++ ++fg++llll+ lm++rk +++++    +p  ++lvl+  ++ llsG+           +     
  KOO21279.1  12 STCLWTAAGGIIGGSISVIVNNALIEIsltpFFAAVFGIVLLLLGGLMMWRKLWEAHD----APCMRVLVLCFSALVLLSGISCFLLEKNWFKTISPNA 106
                 45566677777777777666664442222236******************99865444....6666666666444667777666665554455555556 PP

        TauE 159 glplkkavatslllilvislagalgyal...............agavdwpllllllpgallGallGar 211
                 ++p+  + ++sl +++ ++++ +l  +                  +v + l+++++ gal+G ++Ga 
  KOO21279.1 107 KIPMYMSLGVSLCFSVSFTAVDLLNAYHdrrsydmrqrslvstPQQVGVVLAGAVTQGALFGLMFGAM 174
                 99999999999999999999999986334445555565555566666677777788888888888875 PP

>> HemY_N  HemY protein N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.3   6.9e-05      0.31       1      43 [.      25      67 ..      25      71 .. 0.94

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 6.9e-05
      HemY_N  1 GyVliawggyrietslvvavlllvllfvllylllrllrlllrl 43
                G +++ +++  ie+sl+ ++++++++++ll+  l ++r+l+++
  KOO21279.1 25 GSISVIVNNALIEISLTPFFAAVFGIVLLLLGGLMMWRKLWEA 67
                78999***********************************987 PP

>> SK_channel  Calcium-activated SK potassium channel
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.9   2.3e-05       0.1      18      72 ..      41      94 ..      30     129 .. 0.77
   2 ?   -2.3   0.0      0.93   4.2e+03      23      43 ..     165     185 ..     155     197 .. 0.75

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 2.3e-05
  SK_channel 18 faLvlalfGivlmvvetEllalavteklsivslalkvli.slsTviLLvlivlyha 72
                + ++ a+fGivl ++   +++ + +e + +   +++vl+  +s ++LL  i ++ +
  KOO21279.1 41 TPFFAAVFGIVLLLLGGLMMWRKLWEAHDAP--CMRVLVlCFSALVLLSGISCFLL 94
                55899********************984443..44554416899999999988765 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 0.93
  SK_channel  23 alfGivlmvvetEllalavte 43 
                 alfG+++  +++E + ++  +
  KOO21279.1 165 ALFGLMFGAMDVEDAPQKLRT 185
                 889999999988877766554 PP

>> DUF4131  Domain of unknown function (DUF4131)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.9   2.2    0.0021       9.3       6      57 ..      14      69 ..      10      73 .. 0.87
   2 ?    3.9   0.3    0.0084        38       7      64 ..      77     142 ..      71     163 .. 0.51
   3 ?   -0.7   0.0      0.21   9.5e+02       7      54 ..     155     211 ..     148     226 .. 0.53

  Alignments for each domain:
  == domain 1  score: 5.9 bits;  conditional E-value: 0.0021
     DUF4131  6 alvllalllllllllllllrr....rprrrvllllllllllallgfalrapqpnan 57
                 l++ a +++   + +++++       ++ ++++++++lll+++ + +r ++ +++
  KOO21279.1 14 CLWTAAGGIIGGSISVIVNNAlieiSLTPFFAAVFGIVLLLLGGLMMWRKLWEAHD 69
                6889999999999999998889998889999******************9988765 PP

  == domain 2  score: 3.9 bits;  conditional E-value: 0.0084
     DUF4131   7 lvllalllllllllllllrr........rprrrv..llllllllllallgfalrapqpnandlsqlle 64 
                 ++++ +l+ll  + ++ll +        + +  +   ++l++ l++ +++ a+  +++ +++ s+ ++
  KOO21279.1  77 VLCFSALVLLSGISCFLLEKnwfktispNAK--IpmYMSLGVSLCFSVSFTAVDLLNAYHDRRSYDMR 142
                 3444444444455555554466666643333..23255555555555555555555555555555554 PP

  == domain 3  score: -0.7 bits;  conditional E-value: 0.21
     DUF4131   7 lvllalllllllllllllrr.........rprrrvllllllllllallgfalrapqp 54 
                 +vl +++   +l+ l++            r+  r  l +++l+  +++g+ +  +++
  KOO21279.1 155 VVLAGAVTQGALFGLMFGAMdvedapqklRTEERASLPIGILIGGIVGGVNAVLAYR 211
                 444444444444444443337777777775555665555555555555554444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (235 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       737  (0.0411066); expected 358.6 (0.02)
Passed bias filter:                      404  (0.0225333); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.44u 0.25s 00:00:00.69 Elapsed: 00:00:00.39
# Mc/sec: 1825.90
//
Query:       KOO21280.1  [L=371]
Description: synaptic vesicular amine [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.1e-28   99.3  27.3    8.1e-17   61.2   4.9    2.1  2  MFS_1     Major Facilitator Superfamily
  ------ inclusion threshold ------
        2.4    8.0   3.6        9.6    6.0   0.4    2.4  2  Pam17     Mitochondrial import protein Pam17


Domain annotation for each model (and alignments):
>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.2   4.9     9e-21   8.1e-17      80     219 ..       7     151 ..       1     164 [. 0.74
   2 !   43.7  16.8   1.9e-15   1.7e-11       3     179 ..     148     338 ..     146     360 .. 0.77

  Alignments for each domain:
  == domain 1  score: 61.2 bits;  conditional E-value: 9e-21
       MFS_1  80 lfa...sslw.lllvlrvlqGlgagalfpagaaliadwfpkeergraigllsagfslGailgpllggllasslgWravfyilaivsllafvlfllllpe 174
                 +f+    ++  + l +r+ qG+ga++  +a++a+ia++ ++ + ++++g+  ++++lG+++gp+lgg+l  ++g++++f+ ++++ + a+++   +++ 
  KOO21280.1   7 TFVpegWPFAvWCLSMRIAQGVGAALEETAMYAIIAELDAE-NITFYLGICEISTGLGYMIGPPLGGILFMAGGFSLPFVCVGALIAPAALI---FYRS 101
                 243344556667999**********************9888.***********************************************995...5555 PP

       MFS_1 175 epperkrkspkeee........kgtgpaplvpawkallkdpvlwillialllf 219
                  p + +++s+ +e+          + p++ v a ++ll++p++   +ia++ +
  KOO21280.1 102 MPNDAHPVSKDQERvepvatrsLLVNPQEPV-AMRSLLANPHVI--VIAVAAM 151
                 5555555555555344455555444444444.599999999883..3333332 PP

  == domain 2  score: 43.7 bits;  conditional E-value: 1.9e-15
       MFS_1   3 laaflsalarsilgpalpl.alaedlgispseigllltlyalgaavaslplGrlsd..rfGrrrvlllglllfalglllll...fa....sslwlllvl 91 
                 +aa+l   ++++l p+l + al+  l  +p++ig l+++  +++ ++ +++G l+   r+G+r v+++gl++ ++g+ll     +      +++ ++++
  KOO21280.1 148 VAAMLGNSDYAFLEPTLGEhALNLGLAKTPDAIGALFSVTIVAYTLSCPVIGLLAKreRMGPRAVIVIGLVFQLFGFLLVGpspLLqqeqMGMPQMVLA 246
                 5566666677778888888888888999**************************99445*****************4444433321444455788**** PP

       MFS_1  92 rvlqGlgagalfpagaaliadwfpk..eergraig.llsagfslGailgpllggllasslgWravfyilaivsllafv.lfllllpeepper 179
                  +l G+ga+++++  +  i     +  ee + ai+ l++++f+lG ++gpl+g+  +   g++++  ++a ++l  +  ++++  ++++++ 
  KOO21280.1 247 LLLFGVGAAMSMTPLMDDIMLSCRRhaEEASVAIApLIMSSFALGQMIGPLIGASASGRMGFPWACTLMASLLLAHLAvIAIVSAVRPRKAM 338
                 ********99999998555555554337888888756777*************************999999888874424444444444444 PP

>> Pam17  Mitochondrial import protein Pam17
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.0   0.4    0.0011       9.6      70      98 ..      48      76 ..      17      79 .. 0.69
   2 ?    2.3   0.2     0.015   1.3e+02      70      95 ..     276     301 ..     235     306 .. 0.75

  Alignments for each domain:
  == domain 1  score: 6.0 bits;  conditional E-value: 0.0011
       Pam17 70 plvvlglatlasgalGwllGpvlgsavfk 98
                 ++++  +   s++lG+++Gp lg  +f 
  KOO21280.1 48 NITFYLGICEISTGLGYMIGPPLGGILFM 76
                44444444445678**********99985 PP

  == domain 2  score: 2.3 bits;  conditional E-value: 0.015
       Pam17  70 plvvlglatlasgalGwllGpvlgsa 95 
                   v+++  +++s alG ++Gp++g +
  KOO21280.1 276 ASVAIAPLIMSSFALGQMIGPLIGAS 301
                 5566777889999**********976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (371 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       541  (0.0301746); expected 358.6 (0.02)
Passed bias filter:                      295  (0.0164538); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.48u 0.23s 00:00:00.71 Elapsed: 00:00:00.39
# Mc/sec: 2831.63
//
Query:       KOO21281.1  [L=431]
Description: puff-specific protein bx42-like protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.4e-72  241.3   1.9    3.4e-72  241.3   1.9    1.6  2  SKIP_SNW  SKIP/SNW domain


Domain annotation for each model (and alignments):
>> SKIP_SNW  SKIP/SNW domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.0      0.28   5.1e+03      51      66 ..      78      93 ..      66     110 .. 0.65
   2 !  241.3   1.9   1.9e-76   3.4e-72       1     159 [.     144     302 ..     144     303 .. 0.99

  Alignments for each domain:
  == domain 1  score: -3.0 bits;  conditional E-value: 0.28
    SKIP_SNW 51 pvpvlhspprkltkee 66
                +  v+hs+++ lt+++
  KOO21281.1 78 EGKVVHSTKDALTAKQ 93
                4456666666666554 PP

  == domain 2  score: 241.3 bits;  conditional E-value: 1.9e-76
    SKIP_SNW   1 eyikytpsqaeekknseakqriikivekqeDPleppkfkhkkvpagpesppvpvlhspprkltkeeqekwkIPpaiSnwkNpkGytipLdkRlaadgrg 99 
                 +yi+y++s+a++++ s+a++r+i++ve+++DP+eppkfkhk+vp+gp+spp+pv+hspprk+t+++q++wkIPp+iSnwkN kGytipLdkRlaadgr+
  KOO21281.1 144 TYIRYQSSSAGGAQASGATNRVIRMVEAPVDPMEPPKFKHKRVPRGPPSPPAPVMHSPPRKITVQDQQDWKIPPCISNWKNLKGYTIPLDKRLAADGRN 242
                 69******99999************************************************************************************** PP

    SKIP_SNW 100 lqeveindkFaklseaLeeAerkareevklraelkkklaekekeekeeklrelaekaree 159
                 +qev+i+d+Faklse+L++Aer+areev++ra+++k++a keke+ke++lr la++aree
  KOO21281.1 243 MQEVQISDNFAKLSESLYVAERSAREEVEKRAHIQKRIAAKEKESKEDELRLLAQRAREE 302
                 **********************************************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (431 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       744  (0.041497); expected 358.6 (0.02)
Passed bias filter:                      346  (0.0192983); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.24s 00:00:00.71 Elapsed: 00:00:00.38
# Mc/sec: 3363.96
//
Query:       KOO21282.1  [L=395]
Description: neurohypophysial n-terminal domain containing protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.13   11.1  44.9       0.44    9.4  31.9    3.0  2  VSP       Giardia variant-specific surface protein


Domain annotation for each model (and alignments):
>> VSP  Giardia variant-specific surface protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4  31.9   2.4e-05      0.44      15     136 ..      33     138 ..      18     145 .. 0.80
   2 ?    2.2   4.9    0.0037        66     106     129 ..     151     172 ..     143     186 .. 0.66

  Alignments for each domain:
  == domain 1  score: 9.4 bits;  conditional E-value: 2.4e-05
         VSP  15 tkceasadckvenckacseekkevceecnsstyltptkqcidacakignyyaateadnkkickectvancktcedkgqlkacddGfyksgdacspcdes 113
                    ++ + c v  ck+c+  +k++ce c+ +  +t+ kqc +  +               +c++  ++ c tc++  +l +     +++  +c+ c + 
  KOO21282.1  33 GSGKNKNRCSVGRCKRCVRGDKNQCEVCHNGYAVTEEKQCAPCGQ--------G----CSLCHQAGPSSCDTCQKGYTLVT----SFLEKPQCEKCAPH 115
                 334455579999999999999999999999999999999976433........3....34888999999999988777755....57888899999999 PP

         VSP 114 vktcsagtasdcteclaGkvlky 136
                 +  c ++ a +c ec + ++l y
  KOO21282.1 116 CDNCDTAGAGKCNECKTRHMLTY 138
                 99999999999999999999999 PP

  == domain 2  score: 2.2 bits;  conditional E-value: 0.0037
         VSP 106 acspcdesvktcsagtasdctecl 129
                 +c pc e++k+cs      ct+c 
  KOO21282.1 151 ECVPCAENCKSCSFE--EGCTACE 172
                 567777777776643..4566664 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (395 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1001  (0.0558313); expected 358.6 (0.02)
Passed bias filter:                      298  (0.0166211); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.23s 00:00:00.70 Elapsed: 00:00:00.40
# Mc/sec: 2950.14
//
Query:       KOO21283.1  [L=305]
Description: hypothetical protein Ctob_003395 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
     0.0077   16.0   0.7      0.015   15.1   0.7    1.4  1  DivIC            Septum formation initiator
  ------ inclusion threshold ------
      0.056   13.5   1.1      0.085   13.0   1.1    1.2  1  UPF0242          Uncharacterised protein family (UPF0242) N-t
      0.068   13.6   2.2       0.13   12.7   2.2    1.4  1  ZapB             Cell division protein ZapB
       0.14   12.3   0.3       0.24   11.6   0.3    1.3  1  Cnn_1N           Centrosomin N-terminal motif 1
       0.18   11.8   0.0        0.5   10.3   0.0    1.7  2  Acetyltransf_10  Acetyltransferase (GNAT) domain
       0.25   11.0   1.0       0.35   10.5   1.0    1.1  1  GrpE             GrpE


Domain annotation for each model (and alignments):
>> DivIC  Septum formation initiator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.7   4.9e-06     0.015      23      56 ..      97     130 ..      88     140 .. 0.80

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 4.9e-06
                 HHHHHHHHHHHHHHHHHHHHHHHHHCC-XXXXXX CS
       DivIC  23 kqeiaalqaelaklkaeneeLeaevkdLksdedy 56 
                  +++  +q ++a+l+aen +L++e   L++d d 
  KOO21283.1  97 GEQVSLQQGHIAALQAENTKLKREKTALQQDFDE 130
                 5788899999999999999999999999887664 PP

>> UPF0242  Uncharacterised protein family (UPF0242) N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   1.1   2.8e-05     0.085     100     146 ..      95     141 ..      91     150 .. 0.89

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 2.8e-05
     UPF0242 100 eLkeeldakeeelerlkeenqqLqekleaiaedfeelkleleeqLae 146
                  L e+++ ++  ++ l+ en +L+ ++ a ++df+e++  +e + ++
  KOO21283.1  95 PLGEQVSLQQGHIAALQAENTKLKREKTALQQDFDEYRHTAERRAER 141
                 5778999999*****************************99987655 PP

>> ZapB  Cell division protein ZapB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   2.2   4.3e-05      0.13      20      58 ..     107     145 ..      98     151 .. 0.82

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 4.3e-05
        ZapB  20 itlLqmeieeLkeeneelkeenreleeeneqlkeereaw 58 
                 i++Lq e+ +Lk+e+ +l++  +e ++  e+  e + a+
  KOO21283.1 107 IAALQAENTKLKREKTALQQDFDEYRHTAERRAERHDAV 145
                 889999999999999999999999998777776666655 PP

>> Cnn_1N  Centrosomin N-terminal motif 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.3     8e-05      0.24      34      67 ..     103     136 ..      95     142 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 8e-05
      Cnn_1N  34 seeqkeellkenielkveveslqkelkekkkllr 67 
                 ++ ++ +l +en++lk e   lq++ +e++   +
  KOO21283.1 103 QQGHIAALQAENTKLKREKTALQQDFDEYRHTAE 136
                 5578999*********************998654 PP

>> Acetyltransf_10  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.0   0.00017       0.5      66     108 ..       3      45 ..       1      50 [. 0.89
   2 ?   -2.3   0.0       1.4   4.1e+03      41      70 ..     184     214 ..     176     215 .. 0.77

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.00017
  Acetyltransf_10  66 qGigkaLleaveee.aekdgikleltvnaspyavpfYeklGFka 108
                       G+g++L+ ++++  a  ++++ +  v a++ a+pf++++GF +
       KOO21283.1   3 LGVGSRLVGTLLKGeATAERPE-AGIVWADTGAIPFFRRHGFND 45 
                      699*****99988768888888.*******************75 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 1.4
  Acetyltransf_10  41 kivGviel.rdgshisllfVdpeyrgqGigk 70 
                       +vG++++      ++l +V+ ++ + G+g+
       KOO21283.1 184 PLVGMGAVsGAAPLVGLGAVSGAAPRSGLGE 214
                      5789999955555788889999999999996 PP

>> GrpE  GrpE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   1.0   0.00012      0.35      12      55 ..      98     141 ..      91     164 .. 0.82

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00012
                 HHHCCCCCCTTCHHHCTTSCCCCCCTTTTTTTTHHHHHHHHHHH CS
        GrpE  12 deeeeleeeleelekevkelkekllrllaefenlrkrtekekee 55 
                 ++   ++  +++l++e  +lk +   l+++f+++r  +e+++e 
  KOO21283.1  98 EQVSLQQGHIAALQAENTKLKREKTALQQDFDEYRHTAERRAER 141
                 555666778***************************99998875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (305 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       904  (0.0504211); expected 358.6 (0.02)
Passed bias filter:                      559  (0.0311785); expected 358.6 (0.02)
Passed Vit filter:                        89  (0.00496402); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.49u 0.25s 00:00:00.74 Elapsed: 00:00:00.40
# Mc/sec: 2276.97
//
Query:       KOO21284.1  [L=391]
Description: mpv17 protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    6.8e-14   50.3   1.1    0.00055   19.3   0.1    3.6  3  EF-hand_1     EF hand
    4.8e-13   49.3   0.5    2.5e-08   34.3   0.1    2.6  3  EF-hand_7     EF-hand domain pair
    8.7e-13   47.1   0.8    0.00035   20.3   0.0    3.5  3  EF-hand_6     EF-hand domain
    2.1e-09   36.4   4.0    0.00017   21.0   0.3    3.4  3  EF-hand_5     EF hand
    5.2e-09   36.2   0.0      9e-09   35.4   0.0    1.4  1  Mpv17_PMP22   Mpv17 / PMP22 family
    5.6e-08   32.5   0.5    0.00058   19.7   0.1    3.2  3  EF-hand_8     EF-hand domain pair
    3.2e-05   24.2   0.0     0.0015   18.8   0.1    2.5  2  EF-hand_9     EF-hand domain
    0.00041   20.6   0.0        0.1   12.9   0.0    2.2  2  SPARC_Ca_bdg  Secreted protein acidic and rich in cysteine Ca


Domain annotation for each model (and alignments):
>> EF-hand_1  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.7   0.0   1.5e-05     0.034       6      25 ..     238     257 ..     235     261 .. 0.91
   2 !   19.3   0.1   2.5e-07   0.00055       3      26 ..     322     345 ..     320     346 .. 0.92
   3 !   14.1   0.1   1.1e-05     0.024       2      28 ..     358     384 ..     357     385 .. 0.92

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 1.5e-05
                 HHHHTTTSSSEEEHHHHHHH CS
   EF-hand_1   6 FrefDkDgdGkIdfeEfkel 25 
                 F+ +D+D++G+++++E++++
  KOO21284.1 238 FDALDQDRNGRLTLKELQAA 257
                 999**************986 PP

  == domain 2  score: 19.3 bits;  conditional E-value: 2.5e-07
                 HHHHHHHTTTSSSEEEHHHHHHHH CS
   EF-hand_1   3 keiFrefDkDgdGkIdfeEfkell 26 
                 + +F++fD + dG+Id  E+++ll
  KOO21284.1 322 DVVFAMFDENEDGQIDVRELRNLL 345
                 668******************986 PP

  == domain 3  score: 14.1 bits;  conditional E-value: 1.1e-05
                 HHHHHHHHTTTSSSEEEHHHHHHHHHH CS
   EF-hand_1   2 lkeiFrefDkDgdGkIdfeEfkellkk 28 
                 +++i + +D+D + k+++ Ef +l++ 
  KOO21284.1 358 VEDILKAADTDTNRKLSKAEFFALMQQ 384
                 6899*********************86 PP

>> EF-hand_7  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.7   0.0   5.8e-05      0.13       8      29 ..     238     258 ..     235     281 .. 0.84
   2 ?   -3.3   0.0       5.8   1.3e+04      18      30 ..     297     309 ..     296     313 .. 0.70
   3 !   34.3   0.1   1.1e-11   2.5e-08       3      71 .]     319     383 ..     317     383 .. 0.90

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 5.8e-05
   EF-hand_7   8 FkelDtdgdgyldkeellrllr 29 
                 F++lD+d++g+l+  el+ + +
  KOO21284.1 238 FDALDQDRNGRLTLKELQ-AAQ 258
                 999999999999999999.555 PP

  == domain 2  score: -3.3 bits;  conditional E-value: 5.8
   EF-hand_7  18 yldkeellrllrk 30 
                 y++k+e+lr+l +
  KOO21284.1 297 YMSKTEYLRMLDA 309
                 7788887777765 PP

  == domain 3  score: 34.3 bits;  conditional E-value: 1.1e-11
   EF-hand_7   3 klkea.FkelDtdgdgyldkeellrllrkifqgagegsklsdeelellfkefDtdkdGvisfdEFlklyr 71 
                 +l ++ F ++D + dg +d++el++ll        +g+++  + +e+++k  Dtd ++++s  EF +l++
  KOO21284.1 319 RLADVvFAMFDENEDGQIDVRELRNLLCV-----VTGKEPKGKLVEDILKAADTDTNRKLSKAEFFALMQ 383
                 666777******************97765.....8999988899**********************9996 PP

>> EF-hand_6  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   0.0   1.7e-06    0.0037       6      25 ..     238     257 ..     236     261 .. 0.93
   2 !   20.3   0.0   1.5e-07   0.00035       5      26 ..     324     345 ..     320     348 .. 0.92
   3 !    6.1   0.0    0.0057        13       3      28 ..     359     384 ..     357     388 .. 0.87

  Alignments for each domain:
  == domain 1  score: 17.1 bits;  conditional E-value: 1.7e-06
   EF-hand_6   6 FklfDkdgdGkidaeElrka 25 
                 F+++D+d++G ++ +El++a
  KOO21284.1 238 FDALDQDRNGRLTLKELQAA 257
                 9*****************97 PP

  == domain 2  score: 20.3 bits;  conditional E-value: 1.5e-07
   EF-hand_6   5 aFklfDkdgdGkidaeElrkal 26 
                 +F +fD + dG+id  Elr++l
  KOO21284.1 324 VFAMFDENEDGQIDVRELRNLL 345
                 8******************988 PP

  == domain 3  score: 6.1 bits;  conditional E-value: 0.0057
   EF-hand_6   3 reaFklfDkdgdGkidaeElrkalrk 28 
                 +++ k+ D+d + k++++E+ +++++
  KOO21284.1 359 EDILKAADTDTNRKLSKAEFFALMQQ 384
                 5778999**************99985 PP

>> EF-hand_5  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.9   0.0   1.2e-05     0.028       5      23 ..     238     256 ..     236     257 .. 0.93
   2 !   21.0   0.3   7.4e-08   0.00017       2      24 ..     321     344 ..     320     345 .. 0.90
   3 ?    0.7   0.0      0.19   4.4e+02       2      21 ..     359     378 ..     358     385 .. 0.75

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 1.2e-05
                 HHHH-SS-SSCE-HHHHHH CS
   EF-hand_5   5 FqaiDlNgDGkIskeELkt 23 
                 F+a+D ++ G+++  EL++
  KOO21284.1 238 FDALDQDRNGRLTLKELQA 256
                 *****************95 PP

  == domain 2  score: 21.0 bits;  conditional E-value: 7.4e-08
                 HH.HHHHH-SS-SSCE-HHHHHHH CS
   EF-hand_5   2 kd.tFqaiDlNgDGkIskeELktl 24 
                  d +F ++D N DG+I++ EL++l
  KOO21284.1 321 ADvVFAMFDENEDGQIDVRELRNL 344
                 5779******************97 PP

  == domain 3  score: 0.7 bits;  conditional E-value: 0.19
                 HHHHHHH-SS-SSCE-HHHH CS
   EF-hand_5   2 kdtFqaiDlNgDGkIskeEL 21 
                 +d ++a+D++   k+sk E+
  KOO21284.1 359 EDILKAADTDTNRKLSKAEF 378
                 57788999987667777777 PP

>> Mpv17_PMP22  Mpv17 / PMP22 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.4   0.0     4e-12     9e-09       2      61 ..     135     194 ..     134     195 .. 0.91

  Alignments for each domain:
  == domain 1  score: 35.4 bits;  conditional E-value: 4e-12
  Mpv17_PMP22   2 llegksleeikeelkekfwptlkanwkvWppaqlinFyfvPlkfRvlfvnvvslgWntyL 61 
                    +g+s+e+i  el++ f++tl+ +  +W+p+ ++ F  vP+ ++ lf+n+  ++  + L
   KOO21284.1 135 TAQGHSFEKILRELRDSFVSTLVGDAIFWTPVDILCFWKVPVGLQTLFANAGCFVESIAL 194
                  568***********************************************9888766655 PP

>> EF-hand_8  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.9   0.0    0.0012       2.8      32      47 ..     238     253 ..     235     256 .. 0.93
   2 !    8.2   0.1   0.00097       2.2      12      51 ..     305     344 ..     297     346 .. 0.77
   3 !   19.7   0.1   2.6e-07   0.00058       1      53 [.     332     383 ..     332     384 .. 0.92

  Alignments for each domain:
  == domain 1  score: 7.9 bits;  conditional E-value: 0.0012
   EF-hand_8  32 frefDtdgdGkisfeE 47 
                 f+++D+d++G+++++E
  KOO21284.1 238 FDALDQDRNGRLTLKE 253
                 99************99 PP

  == domain 2  score: 8.2 bits;  conditional E-value: 0.00097
   EF-hand_8  12 rilrilglkkglseee.vdilfrefDtdgdGkisfeEFcvl 51 
                 r+l +l++  g+ ++  +d++f  fD+++dG i+  E  +l
  KOO21284.1 305 RMLDALHTT-GYRKSRlADVVFAMFDENEDGQIDVRELRNL 344
                 555566666.47777778999*************9998776 PP

  == domain 3  score: 19.7 bits;  conditional E-value: 2.6e-07
   EF-hand_8   1 ekgkItreelrril.rilglkkglseeevdilfrefDtdgdGkisfeEFcvlle 53 
                 e+g+I++ elr  l  + g++     + v+++++++Dtd + k+s+ EF++l++
  KOO21284.1 332 EDGQIDVRELRNLLcVVTGKE--PKGKLVEDILKAADTDTNRKLSKAEFFALMQ 383
                 69************8877999..77777*************************8 PP

>> EF-hand_9  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.6   0.0     0.077   1.7e+02       2      20 ..     236     254 ..     235     257 .. 0.88
   2 !   18.8   0.1   6.7e-07    0.0015       2      63 ..     323     383 ..     322     385 .. 0.93

  Alignments for each domain:
  == domain 1  score: 2.6 bits;  conditional E-value: 0.077
   EF-hand_9   2 tvFevcDtqktGrVpvsrl 20 
                 + F++ D ++ Gr ++++l
  KOO21284.1 236 SQFDALDQDRNGRLTLKEL 254
                 57*************9987 PP

  == domain 2  score: 18.8 bits;  conditional E-value: 6.7e-07
   EF-hand_9   2 tvFevcDtqktGrVpvsrlidyLravtaqdpeeseLeelakelDPdgedasvdldtflrvmr 63 
                  vF ++D ++ G++ v +l ++L  vt+++p+   +e+  k +D d +  ++ +  f + m+
  KOO21284.1 323 VVFAMFDENEDGQIDVRELRNLLCVVTGKEPKGKLVEDILKAADTDTN-RKLSKAEFFALMQ 383
                 68******************************************9999.8899999999887 PP

>> SPARC_Ca_bdg  Secreted protein acidic and rich in cysteine Ca binding region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.5   0.0    0.0094        21      49      82 ..     227     260 ..     214     266 .. 0.81
   2 !   12.9   0.0   4.6e-05       0.1      58     111 ..     323     379 ..     296     380 .. 0.85

  Alignments for each domain:
  == domain 1  score: 5.5 bits;  conditional E-value: 0.0094
  SPARC_Ca_bdg  49 lkeckepvawkFsklDtnsdkvlsksELaplrap 82 
                   +++++  +  +F+ lD+++++ l+ +EL++ + +
    KOO21284.1 227 VDAVVAGASSQFDALDQDRNGRLTLKELQAAQGS 260
                   55666667789*****************987765 PP

  == domain 2  score: 12.9 bits;  conditional E-value: 4.6e-05
  SPARC_Ca_bdg  58 wkFsklDtnsdkvlsksELaplraplvkle...hCikpflescDadkdkkislkEwc 111
                     F  +D n+d+ ++ +EL++l   +   e   + ++  l+++D+d+++k+s++E+ 
    KOO21284.1 323 VVFAMFDENEDGQIDVRELRNLLCVVTGKEpkgKLVEDILKAADTDTNRKLSKAEFF 379
                   56999*****************9988766632267999*****************95 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (391 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       477  (0.0266049); expected 358.6 (0.02)
Passed bias filter:                      420  (0.0234257); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.49u 0.24s 00:00:00.73 Elapsed: 00:00:00.41
# Mc/sec: 2883.76
//
Query:       KOO21285.1  [L=234]
Description: hypothetical protein Ctob_003398 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.3e-14   53.4   0.0    6.6e-14   52.8   0.0    1.3  1  Methyltransf_24  Methyltransferase domain
     0.0014   19.3   0.0     0.0023   18.6   0.0    1.3  1  Methyltransf_25  Methyltransferase domain
  ------ inclusion threshold ------
      0.025   15.3   0.0      0.043   14.6   0.0    1.4  1  Methyltransf_12  Methyltransferase domain
       0.11   11.8   0.1       0.16   11.2   0.1    1.2  1  TylF             Macrocin-O-methyltransferase (TylF)


Domain annotation for each model (and alignments):
>> Methyltransf_24  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.8   0.0   1.5e-17   6.6e-14       1     106 []      71     176 ..      71     176 .. 0.89

  Alignments for each domain:
  == domain 1  score: 52.8 bits;  conditional E-value: 1.5e-17
  Methyltransf_24   1 vEiGvysGvstlwllralrrnga....grlvavdhdpgaeeaaalareaglddrvrlikadseealaslaagsiDllfiDgghaaeavledlea 90 
                      vE+G+  G  t w+lr lr   a     + +a+  ++  +++++ a  a++ + ++   +ds+++la+l ++s Dl+++Dg+h+++ v  dlea
       KOO21285.1  71 VEVGTLTGAFTRWMLRQLRPISAvamdVSGYAIKECA--SKTQRTA--AEVGAALTCQLGDSKALLAKLPDDSQDLIYVDGDHNYKGVCGDLEA 160
                      8*******************99966665567777777..4444444..469999**************************************** PP

  Methyltransf_24  91 llprlapggvvlfdDi 106
                      ++p+++ gg++ + D+
       KOO21285.1 161 ARPKVKIGGLMALNDY 176
                      *************998 PP

>> Methyltransf_25  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.6   0.0   5.1e-07    0.0023       2      71 ..      71     146 ..      70     161 .. 0.83

  Alignments for each domain:
  == domain 1  score: 18.6 bits;  conditional E-value: 5.1e-07
                      EEET-TTSHHHHHHHCTSTSSEEEEEESSHHHHHHHHHHHHHTTT....TEEEEESBCCGB..SSSTTTEEEEEEE CS
  Methyltransf_25   2 LdlGcGtGrltlalakrlgkakvtgvDiseemleaareraeeegl....nvefvqgdaedl..pfedgsfDlvvss 71 
                      +++G+ tG +t++++++l   + +++D+s  ++++++++ ++  +     ++++ gd ++l  +++d+s Dl+++ 
       KOO21285.1  71 VEVGTLTGAFTRWMLRQLRPISAVAMDVSGYAIKECASKTQRTAAevgaALTCQLGDSKALlaKLPDDSQDLIYVD 146
                      589999************77***************9999888444446688888899988633589*******984 PP

>> Methyltransf_12  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.6   0.0   9.6e-06     0.043       1      57 [.      71     127 ..      71     148 .. 0.72

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 9.6e-06
  Methyltransf_12   1 LeiGcGtGsllralleklpdieytgvDispsaiedakeklakrennnnnnveleald 57 
                      +e+G+ tG+++r +l++l++i+ +++D+s  ai+  + k+++  ++  + ++ +  d
       KOO21285.1  71 VEVGTLTGAFTRWMLRQLRPISAVAMDVSGYAIKECASKTQRTAAEVGAALTCQLGD 127
                      59*******************************777776666655555555544444 PP

>> TylF  Macrocin-O-methyltransferase (TylF)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.1   3.7e-05      0.16     178     228 ..     132     183 ..     124     193 .. 0.89

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 3.7e-05
        TylF 178 LptapieklallRlDgdl.yestldaleaLYdkvskGGfviiDDyaaveecr 228
                 L+++p ++ +l+ +Dgd  y+  +  lea  +kv  GG++ ++Dy ++e++ 
  KOO21285.1 132 LAKLPDDSQDLIYVDGDHnYKGVCGDLEAARPKVKIGGLMALNDYYLFETVF 183
                 7888999999******965***************************998875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (234 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       285  (0.015896); expected 358.6 (0.02)
Passed bias filter:                      278  (0.0155056); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.40u 0.25s 00:00:00.65 Elapsed: 00:00:00.39
# Mc/sec: 1810.57
//
Query:       KOO21286.1  [L=597]
Description: hypothetical protein Ctob_003399 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.4e-05   25.3  17.7    3.7e-05   23.9  17.7    1.7  1  DUF2076         Uncharacterized protein conserved in bacteria
    0.00089   19.3   6.8     0.0019   18.3   6.8    1.5  1  CHCH            CHCH domain
      0.003   17.2   0.0     0.0059   16.3   0.0    1.5  1  TPR_11          TPR repeat
  ------ inclusion threshold ------
      0.017   15.8   1.7      0.039   14.6   1.7    1.5  1  DUF681          Protein of unknown function (DUF681)
      0.022   15.6   0.0      0.052   14.4   0.0    1.6  1  2OG-FeII_Oxy_3  2OG-Fe(II) oxygenase superfamily
       0.14   12.2   1.6        0.3   11.1   1.6    1.6  1  CX9C            CHCH-CHCH-like Cx9C, IMS import disulfide rel
        7.3    7.7  14.3      0.071   14.0   2.7    3.5  4  TPR_14          Tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> DUF2076  Uncharacterized protein conserved in bacteria (DUF2076)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.9  17.7   1.4e-08   3.7e-05      97     199 ..       3     106 ..       1     142 [. 0.70

  Alignments for each domain:
  == domain 1  score: 23.9 bits;  conditional E-value: 1.4e-08
     DUF2076  97 ggkkerpqpspqarpaapagqalgqeeqyaaqpgyaq.qqaqpqygqpaaapqpggGggFLggAlqtAAGVaGGvllangleslfsgksgeegaasasq 194
                  gkk++++p+p+a p +p  q   +++q+aaq+++a+ + +  q+++p  +p++ggG g++g+ ++  AG  +G++++ +l++++sg+ ++ + a+a+q
  KOO21286.1   3 MGKKKAAAPAPPAPPPGPRFQNNTAARQAAAQQHAAPpATYGSQAAPPMMQPSGGGGMGMMGTMASSMAGSMAGSMIGHSLSGMMSGGAPAAQPAAAQQ 101
                 5555545555555555555444444444333333333234444444444444569999*****************************998877777666 PP

     DUF2076 195 saeee 199
                 ++  +
  KOO21286.1 102 PTPAQ 106
                 66554 PP

>> CHCH  CHCH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.3   6.8   7.4e-07    0.0019       4      32 ..     127     155 ..     124     157 .. 0.96

  Alignments for each domain:
  == domain 1  score: 18.3 bits;  conditional E-value: 7.4e-07
                 HHHHHHHHHHHCTSSTTTTHHHHHHHHHH CS
        CHCH   4 efkeylkClkdnsdefskCrkefeafkeC 32 
                 ++ke++ C+ + +d+ ++Cr +f+afk+C
  KOO21286.1 127 QHKEFMMCMSSTGDNLDQCRHLFDAFKSC 155
                 79*************************** PP

>> TPR_11  TPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.0   2.3e-06    0.0059       6      42 .]     452     488 ..     449     488 .. 0.93

  Alignments for each domain:
  == domain 1  score: 16.3 bits;  conditional E-value: 2.3e-06
      TPR_11   6 eqGkyeeAieaYkkAlkldPdnaeayynLGlayykqG 42 
                 e+ ++++A++ Y++A +l   +++++ nL+++ +++G
  KOO21286.1 452 ERHELPQALALYERARALEWRDPRVHTNLAVVRQQLG 488
                 566899****************************998 PP

>> DUF681  Protein of unknown function (DUF681)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.6   1.7   1.5e-05     0.039      46      76 ..      51      81 ..      27      88 .. 0.86

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 1.5e-05
      DUF681 46 iikcavsggmdmtgkissslttsmggsliar 76
                +++ +  ggm m+g ++ss++ sm gs+i  
  KOO21286.1 51 MMQPSGGGGMGMMGTMASSMAGSMAGSMIGH 81
                56666789********************975 PP

>> 2OG-FeII_Oxy_3  2OG-Fe(II) oxygenase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.4   0.0     2e-05     0.052      13      95 ..     327     394 ..     314     395 .. 0.73

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 2e-05
                     EEE-SS----TT.-.EEEEEEEEE....ET-B--EEE...........---TT-EEEEE-..B-TEEE--B.-SS-EEEEEEEE CS
  2OG-FeII_Oxy_3  13 kpHvDnfekeegsgqrrltvllyLnekeseeGGelelyekdk.eavkikpkkgrlvlFesdellpHevlpvtkggeRlsltgwi 95 
                     k H          +   +t+++ Ln+ ++++GG   +   ++  ++ +   +g +++  s  +  H++  +++g +R++l+++i
      KOO21286.1 327 KVHR---------DGALVTCVVPLNDMSEYTGGGTYM---ESlGSAVV-LPRGHALMQASALR--HAGHAIESG-QRWVLVLFI 394
                     3344.........4589********988889998777...22233333.46899999999666..*****9765.*****9997 PP

>> CX9C  CHCH-CHCH-like Cx9C, IMS import disulfide relay-system,
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   1.6   0.00012       0.3       6      39 ..     122     155 ..     119     160 .. 0.87

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00012
        CX9C   6 kyCpkefeaYhkCvssnqswpekCkeqkkeLakC 39 
                   C+++ +++  C+ss  ++ ++C ++ ++   C
  KOO21286.1 122 DPCMMQHKEFMMCMSSTGDNLDQCRHLFDAFKSC 155
                 68**********************9986666666 PP

>> TPR_14  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.5   0.1      0.61   1.6e+03      21      39 ..      91     109 ..      81     111 .. 0.80
   2 ?   -3.4   0.1         7   1.8e+04       5      16 ..     369     380 ..     368     383 .. 0.79
   3 ?   -2.9   0.1         7   1.8e+04      25      38 ..     413     426 ..     405     433 .. 0.46
   4 ?   14.0   2.7   2.8e-05     0.071       2      43 ..     441     482 ..     440     483 .. 0.94

  Alignments for each domain:
  == domain 1  score: 0.5 bits;  conditional E-value: 0.61
      TPR_14  21 iallrralalaPddaeawl 39 
                 + +++ a a++P++a+aw 
  KOO21286.1  91 APAAQPAAAQQPTPAQAWA 109
                 667788999*******996 PP

  == domain 2  score: -3.4 bits;  conditional E-value: 7
      TPR_14   5 lalaeallalGd 16 
                 l+ a+al+++G 
  KOO21286.1 369 LMQASALRHAGH 380
                 678999999986 PP

  == domain 3  score: -2.9 bits;  conditional E-value: 7
      TPR_14  25 rralalaPddaeaw 38 
                 +ra + + d+ e++
  KOO21286.1 413 QRAADEGDDETELR 426
                 33333333334444 PP

  == domain 4  score: 14.0 bits;  conditional E-value: 2.8e-05
      TPR_14   2 eallalaeallalGdpdeAiallrralalaPddaeawlllaq 43 
                 e+l++ a a  ++ ++ +A+al++ra al + d+++++ la 
  KOO21286.1 441 ELLYDQAVAAHERHELPQALALYERARALEWRDPRVHTNLAV 482
                 78999999*******************************995 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (597 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       517  (0.028836); expected 358.6 (0.02)
Passed bias filter:                      307  (0.0171231); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.58u 0.27s 00:00:00.85 Elapsed: 00:00:00.45
# Mc/sec: 3942.97
//
Query:       KOO21287.1  [L=287]
Description: hypothetical protein Ctob_003405 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (287 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       628  (0.0350271); expected 358.6 (0.02)
Passed bias filter:                      315  (0.0175693); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.43u 0.25s 00:00:00.68 Elapsed: 00:00:00.40
# Mc/sec: 2131.14
//
Query:       KOO21288.1  [L=877]
Description: hypothetical protein Ctob_003404 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.2e-25   88.7   9.0    6.8e-10   38.6   0.1    4.5  4  Arm              Armadillo/beta-catenin-like repeat
    3.2e-09   36.9   0.0    6.9e-09   35.9   0.0    1.4  1  O-FucT           GDP-fucose protein O-fucosyltransferase
      0.007   16.9   2.2      0.007   16.9   2.2    4.5  3  HEAT_EZ          HEAT-like repeat
  ------ inclusion threshold ------
      0.049   13.5   0.2       0.12   12.2   0.2    1.6  1  Glycos_trans_3N  Glycosyl transferase family, helical bundle 
       0.88   10.0  11.3       0.34   11.3   5.2    3.0  3  HEAT_2           HEAT repeats


Domain annotation for each model (and alignments):
>> Arm  Armadillo/beta-catenin-like repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.6   0.2     1e-08   3.6e-05       5      40 ..      34      70 ..      30      71 .. 0.91
   2 !   38.6   0.1   1.9e-13   6.8e-10       1      40 [.      73     112 ..      73     113 .. 0.96
   3 !   29.0   0.2   2.1e-10   7.6e-07       6      41 .]     119     154 ..     116     154 .. 0.94
   4 ?   -1.1   0.0      0.63   2.3e+03       7      17 ..     161     171 ..     160     172 .. 0.91

  Alignments for each domain:
  == domain 1  score: 23.6 bits;  conditional E-value: 1e-08
                HHHHHHTTHHHHHHHHTT.TSSHHHHHHHHHHHHHHT CS
         Arm  5 kdavieaGavppLvrLLs.sedeevqeeAawALsNLa 40
                  a+  aGa+ppLv+LL  +   e+q eAa+AL+ L+
  KOO21288.1 34 SSAIAAAGAIPPLVALLGpDSPAELQDEAAAALRALC 70
                578999***************************9777 PP

  == domain 2  score: 38.6 bits;  conditional E-value: 1.9e-13
                 SHHHHHHHHHTTHHHHHHHHTTTSSHHHHHHHHHHHHHHT CS
         Arm   1 nsenkdavieaGavppLvrLLssedeevqeeAawALsNLa 40 
                 ++en+  v  aGavppLv+LLsse+ e+qe+Aa+ L+ La
  KOO21288.1  73 SDENRSDVLAAGAVPPLVSLLSSESAETQEQAAGLLASLA 112
                 689*********************************9997 PP

  == domain 3  score: 29.0 bits;  conditional E-value: 2.1e-10
                 HHHHHTTHHHHHHHHTTTSSHHHHHHHHHHHHHHTT CS
         Arm   6 davieaGavppLvrLLssedeevqeeAawALsNLaa 41 
                  a++ a +++pL+rL     ++vq+eAa+AL+NLaa
  KOO21288.1 119 AAIVTASGLRPLIRLCAERRCGVQFEAASALRNLAA 154
                 689999****************************96 PP

  == domain 4  score: -1.1 bits;  conditional E-value: 0.63
                 HHHHTTHHHHH CS
         Arm   7 avieaGavppL 17 
                 a+ieaGa p+L
  KOO21288.1 161 AIIEAGATPVL 171
                 79******998 PP

>> O-FucT  GDP-fucose protein O-fucosyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.9   0.0   1.9e-12   6.9e-09       7     321 ..     545     815 ..     540     823 .. 0.68

  Alignments for each domain:
  == domain 1  score: 35.9 bits;  conditional E-value: 1.9e-12
      O-FucT   7 aeGgfNnqrdvilrmvavarllnaTLVlPpw.dqlshwrdsskqnrlpFsdfFdiesLkkdvrviemeeflkelppelwsaekr....ksvckeakpsy 100
                  +G +N q +++  +++ a+ l++ LVlP + +  s +++   +    F+ +Fd+e L + vr       l++ ++e           k +  ++++++
  KOO21288.1 545 RMG-LNHQMSSLSCAINEASFLGRALVLPAFiCTDSGHNRG--EACPTFESLFDVELLGRLVRLR-----LSNSTSESG----YttipKTCGSRCARDE 631
                 588.***************************7544544444..48999**********9999998.....343332222....1122244555666666 PP

      O-FucT 101 ylkeilpllkkkkv...vqlakfqklrCrskqgnpfglwdnfevsfe.....aelvlhdefge.eWkarv........daLrFskeieelaaklvkrll 182
                 y +   pll+++++             C     + ++  d++   +e               + +++a+           L +sk ++++a+k+++++ 
  KOO21288.1 632 YSCDRHPLLERRQHgfwF-------QACL----QHSVDTDHLARRTEallglP---------NgHYDAETapslallrSGLFYSKTLKAIARKVRRQI- 709
                 766666766666654321.......2333....11111222221111112221.........123333334444444468******************. PP

      O-FucT 183 ekrkakggpylalHLRrekDflaaCehgggeeellaspresrreegk.ltpeecvpsleeialqlkgllkelkltsvfvAtdeiyggeelkelkkefpn 280
                       gg y ++HLRr  D l+                     +g    + ++  + ++ +l+l++ + +   +++++ + e +  + ++++ + +  
  KOO21288.1 710 ------GGTYSSIHLRRS-DKLR--------------------AAGAvQARVRDQATQTTTLLSLMRHWIP-PRSTIYIGSTEPPA-F-FAPMASSYRL 778
                 ......9***********.****....................3333334444445556666666665555.58***********6.7.********65 PP

      O-FucT 281 lvkvtkeklaskeelekfkdgsva.aiDqiicsrsdvFigty 321
                 l+  ++     +e le++ +++   a++ +  + s+ ++ ty
  KOO21288.1 779 LF-ASN----FSELLEPLSNNYATyAVESLLFVGSELYVETY 815
                 44.444....558999999999999*****999999999988 PP

>> HEAT_EZ  HEAT-like repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.9   1.0     0.011        40      26      55 .]      39      69 ..      18      69 .. 0.76
   2 !   16.9   2.2     2e-06     0.007       2      55 .]      57     111 ..      56     111 .. 0.81
   3 ?    0.7   1.4      0.22   7.9e+02       3      24 ..     141     162 ..     140     193 .. 0.71

  Alignments for each domain:
  == domain 1  score: 4.9 bits;  conditional E-value: 0.011
     HEAT_EZ 26 vpeilpaLlalLnddsd.eVRaaAagaLgnl 55
                   ++p+L+alL  ds+ e +  Aa aL++l
  KOO21288.1 39 AAGAIPPLVALLGPDSPaELQDEAAAALRAL 69
                5678999999995555559999999999876 PP

  == domain 2  score: 16.9 bits;  conditional E-value: 2e-06
     HEAT_EZ   2 rvRraAawaLGrlaggepellqp.lvpeilpaLlalLnddsdeVRaaAagaLgnl 55 
                 +++  Aa+aL +l+ g +e  ++ l   ++p+L++lL+++s+e++++Aag L+ l
  KOO21288.1  57 ELQDEAAAALRALCLGSDENRSDvLAAGAVPPLVSLLSSESAETQEQAAGLLASL 111
                 57889999997755444444444599**************************875 PP

  == domain 3  score: 0.7 bits;  conditional E-value: 0.22
     HEAT_EZ   3 vRraAawaLGrlaggepellqp 24 
                 v++ Aa+aL +la++ p + + 
  KOO21288.1 141 VQFEAASALRNLAAHSPLHHAI 162
                 8999999998888776665544 PP

>> Glycos_trans_3N  Glycosyl transferase family, helical bundle domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.2   3.4e-05      0.12      16      53 ..      60     122 ..      54     125 .. 0.81

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 3.4e-05
                      HHHHHHHHHHHTTS.........................S-HHHHHHHHHHHHHH---HHHHH CS
  Glycos_trans_3N  16 eeirfaihgilkge.........................vtdaqiaAfLmAlrlkGetaeEia 53 
                      +e+++a++++  g+                          t+ q+a +L++l ++Geta+ i+
       KOO21288.1  60 DEAAAALRALCLGSdenrsdvlaagavpplvsllssesaETQEQAAGLLASLAMNGETAAAIV 122
                      677888888888777788888888887777777777777888*****************9886 PP

>> HEAT_2  HEAT repeats
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.0   1.5     0.019        68      27      58 ..      37      69 ..      11      85 .. 0.55
   2 ?   11.3   5.2   9.6e-05      0.34       1      72 [.      43     135 ..      43     150 .. 0.65
   3 ?    8.2   2.7   0.00088       3.2       1      87 [.      86     190 ..      86     191 .. 0.70

  Alignments for each domain:
  == domain 1  score: 4.0 bits;  conditional E-value: 0.019
      HEAT_2 27 ignpealpaLvell.ededpavRraaaeaLgai 58
                i+   a+p Lv ll  d+ ++ + +aa aL a+
  KOO21288.1 37 IAAAGAIPPLVALLgPDSPAELQDEAAAALRAL 69
                333456777777773344456777777777665 PP

  == domain 2  score: 11.3 bits;  conditional E-value: 9.6e-05
      HEAT_2   1 ldaLlqalendpdpevrraairaLg.......rignp.......ealpaLvellededpavRraaaeaLgaig..........dpealpaLkelld 72 
                 +++L+++l  d+  e++ +a+ aL        +            a+p Lv+ll++e+++++++aa  L+ ++          + + l+ L +l++
  KOO21288.1  43 IPPLVALLGPDSPAELQDEAAAALRalclgsdE---NrsdvlaaGAVPPLVSLLSSESAETQEQAAGLLASLAmngetaaaivTASGLRPLIRLCA 135
                 689999998899999998888888866565541...1444555588********************999866422222222223444566666664 PP

  == domain 3  score: 8.2 bits;  conditional E-value: 0.00088
      HEAT_2   1 ldaLlqalendpdpevrraairaLgrignp..........ealpaLvellededpavRraaaeaLgaig..........dpealpaLkellddddddvv 79 
                 +++L+++l ++++ e++ +a+  L++++            + l+ L++l+      v+ +aa aL  ++          +  a p+L+ +  +   + +
  KOO21288.1  86 VPPLVSLL-SSESAETQEQAAGLLASLAMNgetaaaivtaSGLRPLIRLCAERRCGVQFEAASALRNLAahsplhhaiiEAGATPVLEGIR-HGAASAT 182
                 58999999.99**********99995543333344444446699999999999999*********87753333333333566888888855.4556666 PP

      HEAT_2  80 ReaAaeaL 87 
                 R aA  aL
  KOO21288.1 183 RSAAQGAL 190
                 87776666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (877 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       318  (0.0177366); expected 358.6 (0.02)
Passed bias filter:                      225  (0.0125495); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.62u 0.27s 00:00:00.89 Elapsed: 00:00:00.43
# Mc/sec: 6176.30
//
Query:       KOO21289.1  [L=308]
Description: hypothetical protein Ctob_003403 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.01   16.1   4.3      0.015   15.5   4.3    1.2  1  ATG16      Autophagy protein 16 (ATG16)
      0.021   14.0   0.1      0.034   13.3   0.1    1.3  1  Alpha_TIF  Alpha trans-inducing protein (Alpha-TIF)
      0.034   13.2   0.6      0.041   13.0   0.6    1.1  1  Atg14      Vacuolar sorting 38 and autophagy-related subunit 
      0.054   13.5   0.8       0.09   12.8   0.8    1.3  1  FlxA       FlxA-like protein
       0.06   13.5   2.0        0.1   12.8   2.0    1.3  1  K-box      K-box region
       0.18   12.9   0.4        0.4   11.8   0.4    1.6  1  DUF5320    Family of unknown function (DUF5320)
       0.41   11.0   3.8        0.6   10.4   3.8    1.2  1  OmpH       Outer membrane protein (OmpH-like)


Domain annotation for each model (and alignments):
>> ATG16  Autophagy protein 16 (ATG16)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.5   4.3     6e-06     0.015      43     147 ..     151     252 ..     130     262 .. 0.64

  Alignments for each domain:
  == domain 1  score: 15.5 bits;  conditional E-value: 6e-06
       ATG16  43 kaaasakssksskksakekeasasq.......snskqsakiqsleqklaqlreelael.....yksrgelaqrllelneelqkleeklk.edeerlael 128
                 ++ ++++                 +       s+++q++ +++++++ ++lr+ la+l       +++ l++ + +l +el++l++k + ++ e la++
  KOO21289.1 151 AKLEEEPG----------------AprldktpSAKVQRHLSNASSTQGSRLRSALAALvpctsEAEKQALQDEIDNLRDELRELKKKEReSRPEDLAQM 233
                 22222222................0122233344555666666666666666666654111113467789999**********998766156799**** PP

       ATG16 129 eaeraaletklkdreeelr 147
                 +a+ a  + +l++ree+ +
  KOO21289.1 234 QAMEAYYKVELRNREENYN 252
                 ***************9876 PP

>> Alpha_TIF  Alpha trans-inducing protein (Alpha-TIF)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.1   1.3e-05     0.034     105     133 ..     231     259 ..     198     263 .. 0.87

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 1.3e-05
   Alpha_TIF 105 syveevqdfflgelrareesyatllvtyc 133
                 + +++++ ++++elr ree y++l+ ++ 
  KOO21289.1 231 AQMQAMEAYYKVELRNREENYNQLFDAFA 259
                 56899********************9885 PP

>> Atg14  Vacuolar sorting 38 and autophagy-related subunit 14
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.6   1.6e-05     0.041      66     130 ..     184     249 ..     161     293 .. 0.80

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 1.6e-05
       Atg14  66 kakleelksliadlrerlqelkdklsqlkkeiee.kkkklaklsdklkkRrsdleslqneleerrk 130
                 + +  +     + +++++q l+d +++l++e++e kkk+ +++ ++l+++++  +  + el++r++
  KOO21289.1 184 RLRSALAALVPCTSEAEKQALQDEIDNLRDELRElKKKERESRPEDLAQMQAMEAYYKVELRNREE 249
                 555555556679999*****************983566789999*****99996666666666554 PP

>> FlxA  FlxA-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.8   3.5e-05      0.09      15      55 ..     197     237 ..     175     241 .. 0.85

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 3.5e-05
        FlxA  15 sasqiasLqkQiknlqkqLkelsesdeltkeekkkqqqliq 55 
                 s+++ ++Lq +i+nl ++L+el++++ ++  e  +q q ++
  KOO21289.1 197 SEAEKQALQDEIDNLRDELRELKKKERESRPEDLAQMQAME 237
                 67778899999999999999999998888888888877766 PP

>> K-box  K-box region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   2.0   3.9e-05       0.1       5      43 ..     198     236 ..     195     238 .. 0.87

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 3.9e-05
       K-box   5 qdeeeelkqEvskLkkeieklqrsqRkllGedleslslk 43 
                 + e++ l+ E+++L++e+++l+++ R+   edl++++  
  KOO21289.1 198 EAEKQALQDEIDNLRDELRELKKKERESRPEDLAQMQAM 236
                 445678****************************99865 PP

>> DUF5320  Family of unknown function (DUF5320)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.4   0.00016       0.4      67      97 ..     193     223 ..     167     225 .. 0.81

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 0.00016
     DUF5320  67 aeaskeeekelLeeqaeaLeeeleaikkrlk 97 
                  + ++e+ek++L+++++ L++el ++kk+ +
  KOO21289.1 193 VPCTSEAEKQALQDEIDNLRDELRELKKKER 223
                 567899*********************9866 PP

>> OmpH  Outer membrane protein (OmpH-like)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   3.8   0.00024       0.6      32      85 ..     198     253 ..     175     260 .. 0.57

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00024
                 HHHHHHHHHHHHHHHHHHHHHTTTS...-HHHHHHHHHHHHHHHHHHHHHHHHHHH CS
        OmpH  32 qaeleakekelqklqeelqkkakkl.e.keekeqelqkkeqelqqkqqqkaqelqk 85 
                 +ae +a+++e+++l++el + +kk+ e ++e+  ++q++e+ ++ +++++++++++
  KOO21289.1 198 EAEKQALQDEIDNLRDELRELKKKErEsRPEDLAQMQAMEAYYKVELRNREENYNQ 253
                 45555555555555555543333322236666666888888777766666554443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (308 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1395  (0.0778069); expected 358.6 (0.02)
Passed bias filter:                      996  (0.0555525); expected 358.6 (0.02)
Passed Vit filter:                       169  (0.00942607); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.58u 0.31s 00:00:00.88 Elapsed: 00:00:00.47
# Mc/sec: 1988.79
//
Query:       KOO21290.1  [L=125]
Description: hypothetical protein Ctob_003402 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
  ------ inclusion threshold ------
       0.27   11.2   7.5       0.44   10.5   7.5    1.3  1  Trypan_PARP  Procyclic acidic repetitive protein (PARP)


Domain annotation for each model (and alignments):
>> Trypan_PARP  Procyclic acidic repetitive protein (PARP)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   7.5   2.5e-05      0.44      79     131 ..       8      63 ..       2      65 .. 0.48

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 2.5e-05
  Trypan_PARP  79 petepeeepepepepepepepepepepepepe.pgaa..tlksvalpfaiaavalv 131
                  pe  pe e+ pe  pe e  pe  pe e  p  pg+a  + +  +lp + a+ alv
   KOO21290.1   8 PEIRPEIEGSPEIRPEIEGSPEIRPEIEGSPSlPGSAapARQHSSLPPSSASSALV 63 
                  34445555555555554444444444444443344431134556677777777666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (125 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       272  (0.015171); expected 358.6 (0.02)
Passed bias filter:                      146  (0.00814323); expected 358.6 (0.02)
Passed Vit filter:                         6  (0.000334653); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.35u 0.25s 00:00:00.60 Elapsed: 00:00:00.40
# Mc/sec: 948.38
//
Query:       KOO21291.1  [L=299]
Description: u3 small nucleolar ribonucleoprotein imp4-like protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.1e-28  100.7   0.3    1.4e-28  100.3   0.3    1.1  1  Brix         Brix domain
  ------ inclusion threshold ------
       0.14   12.3   0.0        0.3   11.2   0.0    1.5  1  Bromodomain  Bromodomain


Domain annotation for each model (and alignments):
>> Brix  Brix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  100.3   0.3   1.6e-32   1.4e-28       3     192 ..     103     266 ..     101     267 .. 0.86

  Alignments for each domain:
  == domain 1  score: 100.3 bits;  conditional E-value: 1.6e-32
                 T--HHHHHHHHHHHHHCTTSEEEEEE.ECT-TTTHHHHHHH...-HHHHHHHH..HCTCSEEEEEE..SSTTEEEEEEEEECECTGGGSTTTSTS-TT- CS
        Brix   3 ktssrlrqllkdlrslmkphtasflk.rnsnklkdlvelag...vthlellse..kndcslfvfelskkrPngptlefkvenyslmkdlkkakktefgs 95 
                 ++ss+l+q+lk+++ l+++   ++++ r+ n ++ ++ +++   +++l++l+e    +++l++++l    P+gpt++f+++n+++++dl++  ++++++
  KOO21291.1 103 DPSSKLTQFLKEMKLLIPN---AQRMnRGGNTVQTIIDTCRaegFSDLVILQEhrGVPDGLVISHL----PHGPTAYFGLHNVVMRHDLPQV-APMSEA 193
                 68999************66...4444477789999999999999*********877777*******....*******************998.9***** PP

                 --EEEEES.HHH.....HHHHHHHHHHH..SEEEG..-B-GG-SEEEEEEES.CCTTTECEEEEEEEEEEE..STTTTECT..T..EEEEEEESEEEEE CS
        Brix  96 rPllvfngkenf.....kllksllqdlFrvpkislkspklsglrrvvlftaaenqetdktisfRhYaiklkksgkklpnlekekkerveLeEiGPrfdL 189
                 +P+lv++   n+     ++l  +l++lF  p   +  pk+ + +r+v+f+   n + d  is+Rh  ++   ++          k +  + E+GPrf+L
  KOO21291.1 194 YPHLVLD---NLttkvgRRLGMILKHLF--P---V--PKF-DSKRIVSFH---NRD-D-LISMRHHVFT---KD----------KGKPHMMEVGPRFEL 263
                 *******...6666677***********..6...3..688.99*******...445.7.8********6...22..........225589********* PP

                 EEE CS
        Brix 190 klr 192
                 kl+
  KOO21291.1 264 KLY 266
                 *98 PP

>> Bromodomain  Bromodomain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   3.3e-05       0.3      53      78 ..     107     132 ..      83     138 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 3.3e-05
                  SHHHHHHHHHHHHHHHHHHSHTTSHH CS
  Bromodomain  53 sladfeadlkllfsNarkyngegsvi 78 
                  +l++f +++kll+ Na+++n+ g+ +
   KOO21291.1 107 KLTQFLKEMKLLIPNAQRMNRGGNTV 132
                  599*****************977655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (299 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       443  (0.0247086); expected 358.6 (0.02)
Passed bias filter:                      387  (0.0215851); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.44u 0.26s 00:00:00.70 Elapsed: 00:00:00.41
# Mc/sec: 2167.90
//
Query:       KOO21292.1  [L=386]
Description: hypothetical protein Ctob_003400 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.68   10.0   4.1        5.5    7.0   0.4    2.7  2  XPA_C      XPA protein C-terminus


Domain annotation for each model (and alignments):
>> XPA_C  XPA protein C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.2   0.3    0.0047        84       8      28 ..     278     299 ..     276     302 .. 0.88
   2 ?    7.0   0.4    0.0003       5.5       8      33 ..     311     337 ..     304     347 .. 0.83

  Alignments for each domain:
  == domain 1  score: 3.2 bits;  conditional E-value: 0.0047
       XPA_C   8 TeakedYLLtdedLkdre.lLk 28 
                 T+ k++  L++ +L++r+  L+
  KOO21292.1 278 TKTKQELALRENELQKRDaELP 299
                 7779************997776 PP

  == domain 2  score: 7.0 bits;  conditional E-value: 0.0003
       XPA_C   8 TeakedYLLtdedLkdre.lLkflkkk 33 
                 T+ k++  L+d +L+ r+  L+ l k+
  KOO21292.1 311 TKTKQELALRDNELQSRDsELQKLRKQ 337
                 8889**************999998875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (386 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2075  (0.115734); expected 358.6 (0.02)
Passed bias filter:                      419  (0.02337); expected 358.6 (0.02)
Passed Vit filter:                        53  (0.0029561); expected 17.9 (0.001)
Passed Fwd filter:                        16  (0.000892409); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.71u 0.29s 00:00:01.00 Elapsed: 00:00:00.46
# Mc/sec: 2537.96
//
Query:       KOO21293.1  [L=368]
Description: protein phosphatase 2c containing protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.4e-38  131.8   0.0    4.5e-38  131.4   0.0    1.1  1  PP2C      Protein phosphatase 2C
    2.5e-05   24.0   1.5      8e-05   22.4   1.4    1.9  1  PP2C_2    Protein phosphatase 2C
    0.00023   21.1   0.1     0.0032   17.4   0.0    2.1  2  SpoIIE    Stage II sporulation protein E (SpoIIE)


Domain annotation for each model (and alignments):
>> PP2C  Protein phosphatase 2C
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  131.4   0.0   7.5e-42   4.5e-38      33     253 ..     108     341 ..      81     346 .. 0.86

  Alignments for each domain:
  == domain 1  score: 131.4 bits;  conditional E-value: 7.5e-42
                 CCEEEEEEEEES..SSHHHHHHHHHHHHHHHHHHHCHTTHHHHHHHHHHHHHHHHHHHHHHHHHCHCCT-EEEEEEEEEETTE....EEEEEESS-EEE CS
        PP2C  33 svsffavfdghg..gseaakyarehleeilksqksfeelekleqalrksfladtdeelksskantepsksGstavvalirgtk....lyvAnvGDSrav 125
                   ++f+v+dghg  g++a++++  ++   l +qk   +  k+ +alr +fl+ td  lk +++    + sG+tav +l+r+t       +A+vGDSrav
  KOO21293.1 108 VQALFCVYDGHGasGDKASEFTMRKVA-DLVEQKLTAGI-KEPEALRTAFLE-TDALLKADRTI-DAELSGTTAVAMLLRQTGskreAWLAWVGDSRAV 202
                 5789*******9556788888888887.46666666777.89**********.99999985554.799*************9999************** PP

                 EEETTEEE......EECS---STTSHHHHHHHHHTT--EEECCEEETTT.............BSBSB-EE-GGGTCCCCCCSTSB---EEEEEEE-TT. CS
        PP2C 126 Lcrkgnak......keltedHkpsdedEreRIeeaggsvsngegrvngs.............LavsRalGDlelkpketeeqlvsaePdvtsvkltee. 204
                  ++ + ++      + lted+kp+ ++E++RI++agg+vs+ e    g              La++R++GD+ +k        v+aeP+v +  +++  
  KOO21293.1 203 WAQPQPTEksgykaQNLTEDQKPDTPAEMARIKKAGGFVSPPEEEWGGParvwidaemtlpgLAMARSIGDHLVKT-----VGVIAEPEVVH--FDNLa 294
                 ***9999999******************************9444444445666679*******************8.....69******864..45555 PP

                 EEEEEEE-HHHHTTSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHCC CS
        PP2C 205 defliLacdGlwdvlsdqeavdlvrdelekkkspeevaeelvdeaiarg 253
                   f+++a+dG+w+ +++q+avdl+ + ++k+   +e+ ++l++ a a+ 
  KOO21293.1 295 SGFIVIASDGVWEFIDSQQAVDLIAKFISKG--STEAVTKLIETAAAKW 341
                 8****************************98..9999999999998875 PP

>> PP2C_2  Protein phosphatase 2C
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.4   1.4   1.3e-08     8e-05      26     125 ..     111     207 ..      84     338 .. 0.59

  Alignments for each domain:
  == domain 1  score: 22.4 bits;  conditional E-value: 1.3e-08
      PP2C_2  26 llaVaDGaGS..akrSerGariaveavvealaelleseeeeeeallraleaailadvlkeeaeaqdaelkdyatTllaavvt....pdeivalqiGDGa 118
                 l+ V DG+G+   k Se+  r ++++v ++l   ++++e+ + a+l+   +++l       ++ +  +++  +tT +a++++    ++e++++++GD+ 
  KOO21293.1 111 LFCVYDGHGAsgDKASEFTMRKVADLVEQKLTAGIKEPEALRTAFLE---TDAL------LKADRTIDAELSGTTAVAMLLRqtgsKREAWLAWVGDSR 200
                 337******93335666666666666666666666655555444444...3333......14457889999999999999553444588********** PP

      PP2C_2 119 ivvrdrd 125
                 +v+++++
  KOO21293.1 201 AVWAQPQ 207
                 **99854 PP

>> SpoIIE  Stage II sporulation protein E (SpoIIE)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.4   0.0     0.044   2.6e+02      18      96 ..     125     211 ..     109     222 .. 0.69
   2 !   17.4   0.0   5.3e-07    0.0032     112     191 ..     283     358 ..     256     359 .. 0.74

  Alignments for each domain:
  == domain 1  score: 1.4 bits;  conditional E-value: 0.044
                 HHHHHHHHHHHHHHHHHHTTTS..........HHHHHHHHHHHCHCTTSTT.TTCEEEEEEEETTTTEEEEEEESSSSEEEEETTSTEE CS
      SpoIIE  18 eAalimgllrsalrelatagle..........paevlkrlnralardleeeerfaTavlavydpstgkleyanaGhpppllvrpdggtk 96 
                 ++  +m+ +  ++++ +tag++           +++l +++r+++++l  +   a a+l++   s++++ +a +G++  ++ +p+ ++k
  KOO21293.1 125 ASEFTMRKVADLVEQKLTAGIKepealrtaflETDALLKADRTIDAELSGT--TAVAMLLRQTGSKREAWLAWVGDSRAVWAQPQPTEK 211
                 455677777777777777777766666666666666666777776777666..777777777899999999999999999988855555 PP

  == domain 2  score: 17.4 bits;  conditional E-value: 5.3e-07
                 T-EEEEEEE--TTEEEEEESCCCCSSSHHHHHHCCCHHCHHHHCT.....HCCHHHHHHHHHHH...HTTSSSSS-EEEEEEE CS
      SpoIIE 112 adyetaelelepgdtlllyTDGvtEardsdgelfgkerllallasaegesleelldalveelle...lgsgeleDDitllvlr 191
                 a++e+++++  +   +++++DGv E  ds++      +l+a + s+     +e + +l+e++ +   +++g+ +DDit ++++
  KOO21293.1 283 AEPEVVHFDNLASGFIVIASDGVWEFIDSQQAV----DLIAKFISK---GSTEAVTKLIETAAAkwrQEEGDYRDDITAICIQ 358
                 5677778888888899***********999999....777555533...244555555555555555599**********997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (368 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       453  (0.0252663); expected 358.6 (0.02)
Passed bias filter:                      392  (0.021864); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.48u 0.25s 00:00:00.73 Elapsed: 00:00:00.41
# Mc/sec: 2693.05
//
Query:       KOO21294.1  [L=311]
Description: ipt tig domain protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.8e-17   62.6   8.1    6.5e-08   32.6   0.7    4.2  4  TIG         IPT/TIG domain
     0.0002   21.3   0.0        2.2    8.3   0.0    3.2  3  TIG_plexin  TIG domain


Domain annotation for each model (and alignments):
>> TIG  IPT/TIG domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.1   0.0      0.11     1e+03      64      83 ..       6      24 ..       2      26 .. 0.82
   2 !   20.7   0.0   3.6e-08   0.00033       1      69 [.      30      97 ..      30     113 .. 0.84
   3 !   32.6   0.7   7.2e-12   6.5e-08       3      72 ..     119     191 ..     117     202 .. 0.74
   4 !   10.8   0.3   4.4e-05      0.39       3      85 .]     209     290 ..     208     290 .. 0.89

  Alignments for each domain:
  == domain 1  score: -0.1 bits;  conditional E-value: 0.11
         TIG 64 llnvsvlvdgaqlrsdnttf 83
                +++v+++vdg +l+s++ +f
  KOO21294.1  6 DSTVQLQVDG-ALISTAMKF 24
                6799******.999988887 PP

  == domain 2  score: 20.7 bits;  conditional E-value: 3.6e-08
         TIG  1 PvissisPnsgsasgGttititGtnFgtnssdssvtiggtpctvtasvssttlvcttPpgp.sgllnvsv 69
                P + ++sP  g+  gGt+i +tG  + ++ + + +++g t ++     sst+++c++P+ + sg+ ++ +
  KOO21294.1 30 PRLLAVSPRLGPRTGGTIIQVTGLFL-SELDPLFCRFGQTHVPSR-RKSSTEVMCVAPSSTtSGSQPFAI 97
                667799********************.******************.*************99433555544 PP

  == domain 3  score: 32.6 bits;  conditional E-value: 7.2e-12
         TIG   3 issisPnsgsasgGttititGtnF...gtnssdssvtiggtpctvtasvssttlvcttPpgpsgllnvsvlvd 72 
                 i s++P sg++ gGt++t+tG +F     +  ++ v+++ t + + ++ s +t++c tP++++g + v  + +
  KOO21294.1 119 IISLTPGSGPSVGGTRLTVTGEHFsrrAVDLMVLHVRFNATTVLLAEYRSTHTVICSTPSHTPGAVVVEATSN 191
                 7899********************55555555555555555555555***************88666655444 PP

  == domain 4  score: 10.8 bits;  conditional E-value: 4.4e-05
         TIG   3 issisPnsgsasgGttititGtnFgtnssdssvtiggtpctvtasvssttlvcttPpgpsg.llnvsvlvdgaqlrsdnttftY 85 
                 ++s+ P+sg++ gGt++ i  +     +   ++++g  ++ v ++      +c++Pp +++ ++++s+ + + + + +   f+Y
  KOO21294.1 209 LTSVIPASGPVLGGTLLSIVTSAI-PVRGRWTCRFGQHATAVASFAGAGVFRCVSPPSVTAaEVTMSMANAD-AFTLSTILFSY 290
                 58999***************8888.99999*****************************7779999999999.66666666776 PP

>> TIG_plexin  TIG domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.2   0.0   0.00056         5      27      54 ..      61      88 ..      37      94 .. 0.82
   2 ?    2.1   0.0     0.022     2e+02      28      54 ..     153     180 ..     123     193 .. 0.70
   3 !    8.3   0.0   0.00024       2.2      12      55 ..     224     267 ..     213     287 .. 0.73

  Alignments for each domain:
  == domain 1  score: 7.2 bits;  conditional E-value: 0.00056
  TIG_plexin 27 lkCvFgdleeseatvsdnkvtCdtPkpe 54
                l C+Fg++++   + s+++v C  P+++
  KOO21294.1 61 LFCRFGQTHVPSRRKSSTEVMCVAPSST 88
                67******99999999*********986 PP

  == domain 2  score: 2.1 bits;  conditional E-value: 0.022
  TIG_plexin  28 kCvFgdleeseatvs.dnkvtCdtPkpe 54 
                 + +F+ +++  a+     +v C+tP+++
  KOO21294.1 153 HVRFNATTVLLAEYRsTHTVICSTPSHT 180
                 6667777776666444899******975 PP

  == domain 3  score: 8.3 bits;  conditional E-value: 0.00024
  TIG_plexin  12 eltltvenlpalseklkCvFgdleeseatvs.dnkvtCdtPkpee 55 
                  l++  + +p + ++ +C+Fg++ ++ a +   +  +C +P++  
  KOO21294.1 224 LLSIVTSAIP-VRGRWTCRFGQHATAVASFAgAGVFRCVSPPSVT 267
                 5555555555.46699*****998888887768999*****9754 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (311 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       303  (0.0169); expected 358.6 (0.02)
Passed bias filter:                      247  (0.0137766); expected 358.6 (0.02)
Passed Vit filter:                        12  (0.000669307); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.40u 0.25s 00:00:00.65 Elapsed: 00:00:00.39
# Mc/sec: 2385.45
//
Query:       KOO21295.1  [L=133]
Description: hypothetical protein Ctob_006984 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
  ------ inclusion threshold ------
       0.03   14.1   2.5       0.03   14.1   2.5    2.0  3  Gly-zipper_OmpA  Glycine-zipper domain


Domain annotation for each model (and alignments):
>> Gly-zipper_OmpA  Glycine-zipper domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.3      0.45   8.1e+03      12      15 ..      39      42 ..      29      42 .. 0.53
   2 ?   14.1   2.5   1.7e-06      0.03       6      33 ..      62      92 ..      58      96 .. 0.90
   3 ?   -3.4   0.3      0.48   8.7e+03      16      16 ..     124     124 ..     119     132 .. 0.50

  Alignments for each domain:
  == domain 1  score: -3.3 bits;  conditional E-value: 0.45
  Gly-zipper_OmpA 12 AaaG 15
                     AaaG
       KOO21295.1 39 AAAG 42
                     4444 PP

  == domain 2  score: 14.1 bits;  conditional E-value: 1.7e-06
  Gly-zipper_OmpA  6 vGAalGAaaGAa...vGaitGsaGtGAaiGA 33
                     +GA  GA +GAa    + +t  a+tGAa+GA
       KOO21295.1 62 TGAPPGACTGAAhssCDSSTYRASTGAAAGA 92
                     79999*******9988999999********9 PP

  == domain 3  score: -3.4 bits;  conditional E-value: 0.48
  Gly-zipper_OmpA  16 A 16 
                      A
       KOO21295.1 124 A 124
                      1 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (133 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       311  (0.0173462); expected 358.6 (0.02)
Passed bias filter:                      140  (0.00780858); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.34u 0.24s 00:00:00.58 Elapsed: 00:00:00.37
# Mc/sec: 1079.11
//
Query:       KOO21296.1  [L=924]
Description: serine threonine-protein phosphatase 4 regulatory subunit 3b isoform 1 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.6e-61  205.7   0.3    5.6e-61  205.7   0.3    1.7  2  SMK-1     Component of IIS longevity pathway SMK-1


Domain annotation for each model (and alignments):
>> SMK-1  Component of IIS longevity pathway SMK-1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  205.7   0.3   3.1e-65   5.6e-61       2     190 ..      35     225 ..      34     226 .. 0.98
   2 ?   -2.7   0.1      0.24   4.3e+03      97     115 ..     436     456 ..     429     480 .. 0.78

  Alignments for each domain:
  == domain 1  score: 205.7 bits;  conditional E-value: 3.1e-65
       SMK-1   2 edYikkLlelfeeaedleslenLhalcsivktilllndeelleellsdelilgvvGilEydpefpehkanhRefLkqkakfkevipikdeelkkkihqt 100
                 +dY+ +L+ lfe+aedl+  enLh+++ i+k i++ln+++l+e+ll+d+l++gvvG+lEydpe++ h+++hR+fL+++++fkevip+ d++++k++hq+
  KOO21296.1  35 KDYVPQLVALFETAEDLDTAENLHRFFAIFKGIVMLNNTTLYETLLRDDLLMGVVGALEYDPELKCHEIQHRRFLREEVHFKEVIPFGDASVLKRVHQN 133
                 79************************************************************************************************* PP

       SMK-1 101 yrlqylkDvvLarvlddstlsvLnsliffnqveIvsllqedeefLkelfkllk..deetekekrrelvlllkelcslaknlqlpareelfkt 190
                 + + +lkDvvL+r+ldd+t++ Ln++ f+n+v+Ivs l++d  fL++l ++l+   + ++ ++  ++++ll+elc++ak+lql +r +++++
  KOO21296.1 134 FLIGFLKDVVLPRALDDNTFAALNQVQFYNNVQIVSSLTSDGPFLSNLHAKLSavASGADVNELLDALRLLQELCTIAKTLQLYHRASFYRR 225
                 ***************************************************99556788899999*************************96 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 0.24
       SMK-1  97 ihqtyrlqy..lkDvvLarvl 115
                 +++ yr++y  l++ +La+vl
  KOO21296.1 436 LKHSYRIKYfiLRNNILAKVL 456
                 578899998666888888776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (924 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       478  (0.0266607); expected 358.6 (0.02)
Passed bias filter:                      358  (0.0199677); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.60u 0.25s 00:00:00.85 Elapsed: 00:00:00.40
# Mc/sec: 6934.76
//
Query:       KOO21297.1  [L=374]
Description: hypothetical protein Ctob_000150 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    4.1e-05   23.5   0.1    0.00012   22.0   0.1    1.8  1  LON_substr_bdg  ATP-dependent protease La (LON) substrate-bin
  ------ inclusion threshold ------
      0.074   13.7   0.1       0.15   12.7   0.1    1.6  1  AATF-Che1       Apoptosis antagonizing transcription factor
       0.38   11.0   2.3       0.67   10.2   2.3    1.3  1  DUF1328         Protein of unknown function (DUF1328)
       0.83    9.8   3.3        4.1    7.6   1.4    2.6  2  Mst1_SARAH      C terminal SARAH domain of Mst1


Domain annotation for each model (and alignments):
>> LON_substr_bdg  ATP-dependent protease La (LON) substrate-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.0   0.1   2.7e-08   0.00012       1     144 [.      72     245 ..      72     346 .. 0.64

  Alignments for each domain:
  == domain 1  score: 22.0 bits;  conditional E-value: 2.7e-08
  LON_substr_bdg   1 elpllpldnkvlfPgitlpltvsrpksiaaierlldkdkpyigvflvkesqkdaideesiselysvGtvarIvqil...rlddgrikvvle..gl 90 
                     ++pl+pl ++  +P ++ +l++++p+++a+ ++ l +++     f+v   + d+    +++++++vG++    ++    ++ ++r+k +     +
      KOO21297.1  72 VMPLFPL-GVTYLPYTSPVLNIFEPRYRAMYNDILFSGAR---RFMV--CNVDS----ETGRMAEVGVIFYLDELKevsEQTQDRVKYIGShsVI 156
                     58*****.899************************88888...4555..55554....589********99888887765555555555443366 PP

  LON_substr_bdg  91 eRvkikkl.eke...keegylvaeveiiedd....s..epedsdslqkelkalvqeiiekikk..........................s 144
                      R++++k+ ++      ++yl+aev+++ d     +  +   +++l k  + lv   + ++k+                           
      KOO21297.1 157 GRAQLNKVlNPSvaaTRKSYLRAEVTELRDSdaagNaaTANAEAELLKMFENLVDM-QAELKEeprfteavkgtlafgpgtgkedkglwG 245
                     66666666444344457889999999995544544122222222222333332222.222222344444444444444444444444330 PP

>> AATF-Che1  Apoptosis antagonizing transcription factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.1   3.5e-05      0.15      41      87 ..     181     278 ..     157     325 .. 0.65

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 3.5e-05
   AATF-Che1  41 lkeflesseefeealeeaekalkklleslleLreelleqne.ikkla...................................................e 87 
                   e+ +s++  ++a ++ae++l k+ e+l++++ el ++++ ++++                                                    +
  KOO21297.1 181 VTELRDSDAAGNAATANAEAELLKMFENLVDMQAEL-KEEPrFTEAVkgtlafgpgtgkedkglwgtivlwqqfleqraqvvgnkmqreiqkkvvdflQ 278
                 344555577888999*********************.66666444445999999999999999999999888887766666666666666555554331 PP

>> DUF1328  Protein of unknown function (DUF1328)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   2.3   0.00015      0.67       3      16 ..       6      19 ..       5      20 .. 0.92

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.00015
     DUF1328  3 FLviAliAgvLGFg 16
                 Lv+Al Ag+LGFg
  KOO21297.1  6 LLVLALLAGALGFG 19
                79***********8 PP

>> Mst1_SARAH  C terminal SARAH domain of Mst1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.7   0.0      0.12   5.5e+02      12      28 ..     254     270 ..     251     272 .. 0.91
   2 ?    7.6   1.4   0.00091       4.1      15      36 ..     298     319 ..     296     320 .. 0.92

  Alignments for each domain:
  == domain 1  score: 0.7 bits;  conditional E-value: 0.12
  Mst1_SARAH  12 LqqrlasLDpeMEqEie 28 
                 L+qr +   ++M +Ei+
  KOO21297.1 254 LEQRAQVVGNKMQREIQ 270
                 89999***********7 PP

  == domain 2  score: 7.6 bits;  conditional E-value: 0.00091
  Mst1_SARAH  15 rlasLDpeMEqEieelrkrYqa 36 
                 rl+ L +e+  Ei+ +++rY++
  KOO21297.1 298 RLEDLPEELTSEIRSIQRRYRE 319
                 99******************85 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (374 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       784  (0.043728); expected 358.6 (0.02)
Passed bias filter:                      537  (0.0299515); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.49u 0.24s 00:00:00.73 Elapsed: 00:00:00.39
# Mc/sec: 2903.91
//
Query:       KOO21298.1  [L=380]
Description: hypothetical protein Ctob_000153 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.032   14.1   1.7        8.1    6.5   0.1    3.8  4  TPR_1     Tetratricopeptide repeat
       0.08   13.0   0.1       0.19   11.8   0.1    1.6  1  MIT       MIT (microtubule interacting and transport) domain
       0.34   11.1  11.9        2.6    8.3   3.3    3.6  3  TPR_9     Tetratricopeptide repeat
       0.84    9.9   6.8         51    4.3   0.0    4.5  5  TPR_2     Tetratricopeptide repeat
        1.1    9.5  10.4      0.079   13.3   1.1    3.4  4  TPR_12    Tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> TPR_1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.5   0.1    0.0023       8.1      13      30 ..      45      62 ..      44      64 .. 0.90
   2 ?    0.0   0.0      0.24   8.7e+02       7      29 ..      82     104 ..      77     105 .. 0.82
   3 ?    2.8   0.0     0.031   1.1e+02       5      27 ..     121     143 ..     117     144 .. 0.85
   4 ?   -0.3   0.1       0.3   1.1e+03       4      22 ..     184     202 ..     182     204 .. 0.83

  Alignments for each domain:
  == domain 1  score: 6.5 bits;  conditional E-value: 0.0023
                HTT-HHHHHHHHHHHHHH CS
       TPR_1 13 klgkydeAleyyekALel 30
                +++ +d Al++y + L+l
  KOO21298.1 45 RQKLFDAALADYTESLRL 62
                5889***********987 PP

  == domain 2  score: 0.0 bits;  conditional E-value: 0.24
                 HHHHHHHTT-HHHHHHHHHHHHH CS
       TPR_1   7 lGnayfklgkydeAleyyekALe 29 
                 ++ +   l++++ A+++   A+ 
  KOO21298.1  82 RARVQEALERWKFAEADLTAAID 104
                 7788899999999*999999985 PP

  == domain 3  score: 2.8 bits;  conditional E-value: 0.031
                 HHHHHHHHHTT-HHHHHHHHHHH CS
       TPR_1   5 ynlGnayfklgkydeAleyyekA 27 
                   +G+a  +lg++  A e+  +A
  KOO21298.1 121 ASRGAARSRLGDFSGAAEDALRA 143
                 579*************9986665 PP

  == domain 4  score: -0.3 bits;  conditional E-value: 0.3
                 HHHHHHHHHHTT-HHHHHH CS
       TPR_1   4 lynlGnayfklgkydeAle 22 
                 + n+G++ +  g++  A +
  KOO21298.1 184 FQNKGVIAQGRGNWHLAYA 202
                 669**********998865 PP

>> MIT  MIT (microtubule interacting and transport) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.1   5.3e-05      0.19      16      61 ..      45      93 ..      41      96 .. 0.87

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 5.3e-05
         MIT 16 nagnyeeAlelYkealelLlqalkekne...errellrekieeYleRae 61
                +++ +++Al  Y+e+l+l +qa ++ ++   +r   lr++++e leR +
  KOO21298.1 45 RQKLFDAALADYTESLRLVQQAGANPDPaelQRTFVLRARVQEALERWK 93
                677799******************6444668****************76 PP

>> TPR_9  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.3   3.3   0.00073       2.6       5      60 ..      43     107 ..      39     116 .. 0.86
   2 ?    6.6   0.1    0.0024       8.4      34      51 ..     122     139 ..     111     142 .. 0.88
   3 ?   -0.5   0.1       0.4   1.4e+03      34      48 ..     186     200 ..     155     203 .. 0.70

  Alignments for each domain:
  == domain 1  score: 8.3 bits;  conditional E-value: 0.00073
       TPR_9   5 aireedweralavverllll......aPddpeerrd...RGlllaqlGclsaAladLeaylalap 60 
                   r++ +++ala +   l l      +Pd++e+ r    R+++++ l++++ A adL a+++  +
  KOO21298.1  43 IERQKLFDAALADYTESLRLvqqagaNPDPAELQRTfvlRARVQEALERWKFAEADLTAAIDRLD 107
                 578999*******99999999****99999999886666*********************98665 PP

  == domain 2  score: 6.6 bits;  conditional E-value: 0.0024
       TPR_9  34 dRGlllaqlGclsaAlad 51 
                  RG ++ +lG++s+A++d
  KOO21298.1 122 SRGAARSRLGDFSGAAED 139
                 69**************98 PP

  == domain 3  score: -0.5 bits;  conditional E-value: 0.4
       TPR_9  34 dRGlllaqlGclsaA 48 
                   G++ + +G+++ A
  KOO21298.1 186 NKGVIAQGRGNWHLA 200
                 567777777777766 PP

>> TPR_2  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.0   0.1     0.019        67      13      30 ..      45      62 ..      42      66 .. 0.86
   2 ?    1.5   0.1      0.11   4.1e+02       6      29 ..      81     104 ..      77     107 .. 0.88
   3 ?    4.3   0.0     0.014        51       6      27 ..     122     143 ..     117     147 .. 0.87
   4 ?   -1.4   0.0         1   3.6e+03       8      25 ..     164     181 ..     163     186 .. 0.82
   5 ?   -1.5   0.0         1   3.7e+03       4      20 ..     184     200 ..     181     203 .. 0.79

  Alignments for each domain:
  == domain 1  score: 4.0 bits;  conditional E-value: 0.019
       TPR_2 13 klgdyeeAleafekAlel 30
                +++ ++ Al+++ ++l+l
  KOO21298.1 45 RQKLFDAALADYTESLRL 62
                67789***********98 PP

  == domain 2  score: 1.5 bits;  conditional E-value: 0.11
       TPR_2   6 nlGlayyklgdyeeAleafekAle 29 
                  ++++ ++l +++ A++++ +A+ 
  KOO21298.1  81 LRARVQEALERWKFAEADLTAAID 104
                 6899999***********999985 PP

  == domain 3  score: 4.3 bits;  conditional E-value: 0.014
       TPR_2   6 nlGlayyklgdyeeAleafekA 27 
                  +G a  +lgd+  A+e+  +A
  KOO21298.1 122 SRGAARSRLGDFSGAAEDALRA 143
                 5899999**********99988 PP

  == domain 4  score: -1.4 bits;  conditional E-value: 1
       TPR_2   8 GlayyklgdyeeAleafe 25 
                 +l +y +++  eA+e ++
  KOO21298.1 164 ALYLYGADRIPEAVEKMR 181
                 567899999999999876 PP

  == domain 5  score: -1.5 bits;  conditional E-value: 1
       TPR_2   4 lynlGlayyklgdyeeA 20 
                   n G ++  +g++  A
  KOO21298.1 184 FQNKGVIAQGRGNWHLA 200
                 56889999999999877 PP

>> TPR_12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.0       1.5   5.2e+03      62      75 ..      14      27 ..       3      29 .. 0.72
   2 ?   13.3   1.1   2.2e-05     0.079      14      75 ..      44     106 ..      33     108 .. 0.90
   3 ?    0.3   0.2      0.25   8.8e+02      10      66 ..     124     178 ..     119     181 .. 0.75
   4 ?   -1.3   0.0      0.75   2.7e+03       8      26 ..     186     204 ..     182     212 .. 0.83

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 1.5
      TPR_12 62 eeAlelleealaia 75
                +eA++ l++a  +a
  KOO21298.1 14 AEAQSVLRKAFTMA 27
                57777777777665 PP

  == domain 2  score: 13.3 bits;  conditional E-value: 2.2e-05
      TPR_12  14 rrlgrydeAlellekaleiarrl.lGpdhpltattlrnLgrlyralgryeeAlelleealaia 75 
                  r++ +d Al+ + ++l++++++  +pd +++ +t    +r+++al+r++ A++ l+ a++++
  KOO21298.1  44 ERQKLFDAALADYTESLRLVQQAgANPDPAELQRTFVLRARVQEALERWKFAEADLTAAIDRL 106
                 58999***************88878888888899999*****************999999876 PP

  == domain 3  score: 0.3 bits;  conditional E-value: 0.25
      TPR_12  10 aavlrrlgrydeAlellekaleiarrllGpdhpltattlrnLgrlyralgryeeAle 66 
                 +a+  rlg++  A e   +a + ++ +  +d+   +++  + + +++ ++r  eA+e
  KOO21298.1 124 GAARSRLGDFSGAAEDALRAEDEFKMI--GDRVHRLSSAADSALYLYGADRIPEAVE 178
                 666777788888888777777777777..6777788888888888888888888875 PP

  == domain 4  score: -1.3 bits;  conditional E-value: 0.75
      TPR_12   8 nlaavlrrlgrydeAlell 26 
                 n +++ + +g+++ A + +
  KOO21298.1 186 NKGVIAQGRGNWHLAYAAH 204
                 7789999999999997765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (380 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       486  (0.0271069); expected 358.6 (0.02)
Passed bias filter:                      362  (0.0201908); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.47u 0.23s 00:00:00.70 Elapsed: 00:00:00.38
# Mc/sec: 3028.02
//
Query:       KOO21299.1  [L=956]
Description: transitional endoplasmic reticulum ATPase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.3e-94  312.8   0.0    3.8e-46  156.8   0.0    2.9  2  AAA              ATPase family associated with various cellul
    2.4e-29  100.9   5.2    6.2e-16   57.9   1.3    2.9  2  AAA_lid_3        AAA+ lid domain
    2.6e-28   95.4  12.2    1.6e-06   27.2   0.2    5.0  4  EF-hand_1        EF hand
    9.4e-28   96.5   2.6    2.2e-13   50.4   0.1    2.9  2  EF-hand_7        EF-hand domain pair
    4.5e-24   84.4   0.8    5.4e-23   81.0   0.1    2.9  2  CDC48_N          Cell division protein 48 (CDC48), N-terminal
    4.2e-21   74.6   5.5    5.3e-10   39.0   0.2    4.5  4  EF-hand_8        EF-hand domain pair
    1.5e-18   65.1  13.3      7e-06   25.6   0.2    5.2  4  EF-hand_6        EF-hand domain
    2.9e-17   61.3  12.1    8.7e-05   21.8   0.0    5.1  4  EF-hand_5        EF hand
    1.4e-13   50.9   0.0    2.5e-05   24.1   0.0    2.8  2  RuvB_N           Holliday junction DNA helicase RuvB P-loop d
    3.1e-13   50.2   0.0    2.8e-06   27.5   0.0    3.3  2  AAA_2            AAA domain (Cdc48 subfamily)
    2.7e-12   46.3   0.0    5.6e-12   45.3   0.0    1.6  1  CDC48_2          Cell division protein 48 (CDC48), domain 2
      5e-11   43.0   0.0    1.5e-05   25.2   0.0    2.6  2  AAA_33           AAA domain
    8.3e-11   42.6   0.2     0.0011   19.4   0.0    3.9  2  AAA_16           AAA ATPase domain
    1.6e-10   41.1   0.0    3.3e-05   23.9   0.0    3.2  2  AAA_5            AAA domain (dynein-related subfamily)
    2.4e-09   37.6   0.5      0.064   13.5   0.0    4.6  3  AAA_22           AAA domain
    2.4e-08   34.2   0.3    5.5e-05   23.4   0.0    3.2  3  EF-hand_9        EF-hand domain
    3.3e-08   33.1   0.0     0.0019   17.5   0.0    2.6  2  TIP49            TIP49 P-loop domain
    2.2e-07   31.0   0.0      0.018   15.0   0.0    2.8  2  AAA_14           AAA domain
    3.9e-07   29.7   0.3      0.032   13.6   0.1    2.6  2  Mg_chelatase     Magnesium chelatase, subunit ChlI
    1.5e-06   28.8   0.0      0.096   13.2   0.0    2.9  2  AAA_18           AAA domain
    1.8e-06   27.9   0.0     0.0028   17.4   0.0    3.2  3  Viral_helicase1  Viral (Superfamily 1) RNA helicase
    2.1e-06   28.1   0.0      0.009   16.4   0.0    3.0  2  RNA_helicase     RNA helicase
    2.1e-06   27.6   0.8    2.8e-05   24.0   0.1    3.0  2  Vps4_C           Vps4 C terminal oligomerisation domain
    3.3e-06   26.9   0.1      0.067   12.9   0.0    2.7  2  IstB_IS21        IstB-like ATP binding protein
    1.3e-05   25.7   0.1      0.028   15.0   0.0    3.3  2  ABC_tran         ABC transporter
    3.2e-05   24.4   0.3       0.37   11.2   0.0    3.3  2  AAA_17           AAA domain
    4.3e-05   23.5   1.8       0.23   11.4   0.0    4.1  4  ATPase_2         ATPase domain predominantly from Archaea
    4.9e-05   23.6   0.1       0.35   11.1   0.0    3.1  3  AAA_28           AAA domain
    8.1e-05   22.0   0.0       0.43    9.8   0.0    2.5  2  Zeta_toxin       Zeta toxin
    0.00011   21.7   0.1        2.7    7.3   0.0    3.7  3  ATPase           KaiC
    0.00011   21.9   0.0       0.75    9.5   0.0    3.1  2  Sigma54_activat  Sigma-54 interaction domain
    0.00012   21.7   0.0       0.15   11.6   0.0    2.7  2  AAA_7            P-loop containing dynein motor region
    0.00015   21.0   0.1      0.038   13.1   0.0    2.4  2  Parvo_NS1        Parvovirus non-structural protein NS1
    0.00015   21.4   2.0          3    7.4   0.0    4.2  4  AAA_25           AAA domain
    0.00015   21.7   0.0       0.67    9.7   0.0    2.5  2  Bac_DnaA         Bacterial dnaA  protein
    0.00032   20.7   0.0       0.23   11.4   0.0    2.5  2  TsaE             Threonylcarbamoyl adenosine biosynthesis pro
    0.00046   20.3   0.0          1    9.5   0.0    2.7  2  Sigma54_activ_2  Sigma-54 interaction domain
    0.00047   20.5   0.0        1.5    9.1   0.0    2.6  2  SPARC_Ca_bdg     Secreted protein acidic and rich in cysteine
    0.00077   19.4   0.1       0.29   11.0   0.0    3.0  2  NACHT            NACHT domain
     0.0009   18.5   0.0       0.29   10.3   0.0    2.7  2  NB-ARC           NB-ARC domain
    0.00094   19.0   0.2        1.9    8.2   0.0    2.8  2  AAA_24           AAA domain
      0.001   18.5   0.0     0.0021   17.6   0.0    1.4  1  UFD1             Ubiquitin fusion degradation protein UFD1
     0.0016   18.3   0.6       0.12   12.4   0.1    2.5  2  EF-hand_4        Cytoskeletal-regulatory complex EF hand
     0.0017   18.2   0.0          2    8.3   0.0    3.1  2  AAA_3            ATPase family associated with various cellul
      0.002   17.6   0.2        2.4    7.6   0.0    2.5  2  PhoH             PhoH-like protein
     0.0027   17.7   0.0       0.53   10.3   0.0    2.5  2  ResIII           Type III restriction enzyme, res subunit
      0.004   16.4   0.1        2.4    7.3   0.0    2.8  2  DUF2075          Uncharacterized conserved protein (DUF2075)
     0.0062   16.7   0.1          1    9.5   0.0    2.9  2  Cytidylate_kin2  Cytidylate kinase-like family
     0.0075   16.2   0.0       0.84    9.5   0.0    2.7  2  Rad17            Rad17 P-loop domain
      0.008   15.4   0.0        0.3   10.2   0.0    2.5  2  DUF815           Protein of unknown function (DUF815)
     0.0088   16.4   2.5         18    5.6   0.0    4.4  3  AAA_19           AAA domain
  ------ inclusion threshold ------
      0.013   15.4   1.6        6.5    6.6   0.0    4.6  4  NTPase_1         NTPase
      0.018   15.0   0.0        2.7    8.1   0.0    2.7  2  UPF0154          Uncharacterised protein family (UPF0154)
      0.022   14.7   4.4        1.6    8.7   1.1    3.3  2  TerB             Tellurite resistance protein TerB
      0.029   14.5   0.4         11    6.1   0.0    3.2  2  SKI              Shikimate kinase
      0.065   13.0   0.3         10    5.8   0.0    2.8  2  AAA_11           AAA domain
      0.071   12.8   0.3         11    5.7   0.0    2.7  2  Cytidylate_kin   Cytidylate kinase
      0.073   12.8   0.4         23    4.6   0.0    3.2  3  AAA_30           AAA domain
      0.089   12.0   0.0        0.8    8.9   0.0    2.2  2  KAP_NTPase       KAP family P-loop domain
      0.094   12.5   0.0          4    7.2   0.0    2.6  2  PduV-EutP        Ethanolamine utilisation - propanediol utili
       0.18   11.4   0.0        2.3    7.8   0.0    2.6  2  Zot              Zonular occludens toxin (Zot)


Domain annotation for each model (and alignments):
>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  156.8   0.0   1.3e-48   3.8e-46       1     131 [.     385     514 ..     385     515 .. 0.97
   2 !  152.7   0.0   2.3e-47   6.7e-45       1     132 []     658     791 ..     658     791 .. 0.97

  Alignments for each domain:
  == domain 1  score: 156.8 bits;  conditional E-value: 1.3e-48
                 EEEESSTTSSHHHHHHHHHHHHTHEEEEEETTTCSSSSTTHHHHHHHHHHHHHHHTSTSEEEEEETGGGHHHHHTTCCCHHHHHHHHHHHHHHHHTTTS CS
         AAA   1 vllyGppGtGKTllakavakelgvefleisgsellskyvgesekkirelfkeakekakpsilfiDEidalaksrsgseseeeervvnqLlteldgvkkk 99 
                 +l++GppG GKTl+a+ava+e+g+ f+ i+g+e++sk+ gese+++r+ f+ea++++ p i+fiDEid++a++r++++ e+e+r+v+qLlt +dg+k +
  KOO21299.1 385 ILMFGPPGSGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNS-PAIIFIDEIDSIAPKREKTQGEVERRIVSQLLTLMDGLKAR 482
                 699*****************************************************9.****************************************8 PP

                 SSTEEEEEEESSGGGSTHHHHS.TTSSEEEETT CS
         AAA 100 eskvivigatnrpdkldpallr.gRfdrkieie 131
                  + v+vigatnrp+++dpal+r gRfdr++ i+
  KOO21299.1 483 AH-VVVIGATNRPNSIDPALRRfGRFDREVDIG 514
                 66.*************************99886 PP

  == domain 2  score: 152.7 bits;  conditional E-value: 2.3e-47
                 EEEESSTTSSHHHHHHHHHHHHTHEEEEEETTTCSSSSTTHHHHHHHHHHHHHHHTSTSEEEEEETGGGHHHHH...TTCCCHHHHHHHHHHHHHHHHT CS
         AAA   1 vllyGppGtGKTllakavakelgvefleisgsellskyvgesekkirelfkeakekakpsilfiDEidalaksr...sgseseeeervvnqLlteldgv 96 
                 vl+yGppG+GKTllaka+a+e++++f++i+g+ell +++gese+++relf++a+  a p++lf+DE+d++a++r    g++ + ++rv+nq+lte+dg+
  KOO21299.1 658 VLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESESNVRELFDKARGAA-PCVLFFDELDSIARARgssGGDAGGAGDRVINQILTEMDGM 755
                 79****************************************************999.****************9976779999*************** PP

                 TTSSSTEEEEEEESSGGGSTHHHHS.TTSSEEEETTS CS
         AAA  97 kkkeskvivigatnrpdkldpallr.gRfdrkieiel 132
                   k+s v++igatnrpd +dpa+lr gR+d+ i+i+l
  KOO21299.1 756 GAKKS-VFIIGATNRPDIIDPAVLRpGRLDQLIYIPL 791
                 **877.****************************985 PP

>> AAA_lid_3  AAA+ lid domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.9   1.3   2.1e-18   6.2e-16       1      42 [.     537     578 ..     537     582 .. 0.94
   2 !   43.7   0.1     6e-14   1.8e-11       1      43 [.     813     856 ..     813     858 .. 0.93

  Alignments for each domain:
  == domain 1  score: 57.9 bits;  conditional E-value: 2.1e-18
   AAA_lid_3   1 dvdlkeLAerTeGySGADlaalcreAallAlrrgikeitmed 42 
                 dvdl++LA++T+Gy+GADlaalc eAa+ ++r++++ i+ +d
  KOO21299.1 537 DVDLEQLAKETHGYVGADLAALCTEAAMQCIREKMDVIDLDD 578
                 9***********************************998776 PP

  == domain 2  score: 43.7 bits;  conditional E-value: 6e-14
   AAA_lid_3   1 dvdlkeLAerTeGySGADlaalcreAallAlrrgike.itmedf 43 
                 dvd+  LA+  +G+SGADl ++c++Aa +A+r++i++ i+me  
  KOO21299.1 813 DVDIPFLARTLHGFSGADLTEICQRAAKMAIRESIEKeIEMEKE 856
                 89**********************************66***976 PP

>> EF-hand_1  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.9   0.2   6.3e-08   1.9e-05       1      28 [.      30      57 ..      30      58 .. 0.95
   2 !   27.2   0.2   5.4e-09   1.6e-06       1      28 [.      66      93 ..      66      94 .. 0.95
   3 !   24.8   0.0   3.2e-08   9.3e-06       2      27 ..     104     129 ..     103     131 .. 0.93
   4 !   24.6   0.3   3.9e-08   1.1e-05       2      25 ..     140     163 ..     139     166 .. 0.90

  Alignments for each domain:
  == domain 1  score: 23.9 bits;  conditional E-value: 6.3e-08
                HHHHHHHHHTTTSSSEEEHHHHHHHHHH CS
   EF-hand_1  1 elkeiFrefDkDgdGkIdfeEfkellkk 28
                e++e+F+ fDkDg G Id  E+k+l+++
  KOO21299.1 30 EFREAFNSFDKDGGGSIDARELKDLMAS 57
                79************************86 PP

  == domain 2  score: 27.2 bits;  conditional E-value: 5.4e-09
                HHHHHHHHHTTTSSSEEEHHHHHHHHHH CS
   EF-hand_1  1 elkeiFrefDkDgdGkIdfeEfkellkk 28
                el+e++r++D Dg+G Idf Ef++l+++
  KOO21299.1 66 ELEEMIRIADADGTGDIDFAEFVTLMAH 93
                79************************86 PP

  == domain 3  score: 24.8 bits;  conditional E-value: 3.2e-08
                 HHHHHHHHTTTSSSEEEHHHHHHHHH CS
   EF-hand_1   2 lkeiFrefDkDgdGkIdfeEfkellk 27 
                 l+ +F++fD+ gdG+I+ eE+++++ 
  KOO21299.1 104 LRAAFSVFDTSGDGFINAEEMRRIMI 129
                 799*********************95 PP

  == domain 4  score: 24.6 bits;  conditional E-value: 3.9e-08
                 HHHHHHHHTTTSSSEEEHHHHHHH CS
   EF-hand_1   2 lkeiFrefDkDgdGkIdfeEfkel 25 
                 +++++r++Dk+gdG Id++Ef ++
  KOO21299.1 140 VEQVIRKVDKNGDGAIDYDEFTKA 163
                 789******************987 PP

>> EF-hand_7  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.1   0.4   3.5e-14     1e-11       3      70 ..      30      91 ..      28      92 .. 0.96
   2 !   50.4   0.1   7.5e-16   2.2e-13       2      69 ..     102     163 ..     101     165 .. 0.94

  Alignments for each domain:
  == domain 1  score: 45.1 bits;  conditional E-value: 3.5e-14
   EF-hand_7  3 klkeaFkelDtdgdgyldkeellrllrkifqgagegsklsdeelellfkefDtdkdGvisfdEFlkly 70
                + +eaF+++D+dg g++d +el++l+       + g +++deele++++  D d+ G i+f EF++l+
  KOO21299.1 30 EFREAFNSFDKDGGGSIDARELKDLMA------SVGQNPTDEELEEMIRIADADGTGDIDFAEFVTLM 91
                5789***********************......999999**************************998 PP

  == domain 2  score: 50.4 bits;  conditional E-value: 7.5e-16
   EF-hand_7   2 eklkeaFkelDtdgdgyldkeellrllrkifqgagegsklsdeelellfkefDtdkdGvisfdEFlkl 69 
                 e l+ aF  +Dt gdg+++ ee++r++         g++++ e +e++++++D+++dG i++dEF k+
  KOO21299.1 102 ETLRAAFSVFDTSGDGFINAEEMRRIMI------NVGEPVTLEDVEQVIRKVDKNGDGAIDYDEFTKA 163
                 789999********************99......899999999**********************987 PP

>> CDC48_N  Cell division protein 48 (CDC48), N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.4   0.1       4.5   1.3e+03      19      49 ..     119     145 ..     118     163 .. 0.71
   2 !   81.0   0.1   1.8e-25   5.4e-23       1      84 [.     170     251 ..     170     253 .. 0.94

  Alignments for each domain:
  == domain 1  score: -0.4 bits;  conditional E-value: 4.5
                 E-HHHHHHHTS-TTSEEEEECCCCEEEEEEE CS
     CDC48_N  19 idpedmeelglepgdvveiegkrkTvaivwp 49 
                 i+ e m+++ ++ g+ v++e  +    +v++
  KOO21299.1 119 INAEEMRRIMINVGEPVTLEDVE----QVIR 145
                 89999************999855....3444 PP

  == domain 2  score: 81.0 bits;  conditional E-value: 1.8e-25
                 CEEEECCS.S-CSSTTEEEE-HHHHHHHTS-TTSEEEEEC.CCC.EEEEEEEBSTTSTTTTEEEE-HHHHHHHT--TTEEEEEEEE- CS
     CDC48_N   1 rLrVaeap.qedvgrgivridpedmeelglepgdvveieg.krk.TvaivwpaepedegkgiIrmdgvtRknagvsiGdkVtVrkae 84 
                 rL V+ea  +   ++++v+++ ++meel+l++gd+v ++g +rk Tv+iv++++++ e +g+Irm++ +Rkn++v++Gd V+V+++ 
  KOO21299.1 170 RLLVDEASnD---DNSVVALSLATMEELQLFRGDTVLLKGkRRKdTVCIVLADDTC-E-PGKIRMNKTIRKNLKVRLGDVVSVHQCP 251
                 689****977...***************************7777************.4.7************************996 PP

>> EF-hand_8  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.9   0.0      0.16        47      24      44 ..      27      47 ..       4      51 .. 0.76
   2 !   39.0   0.2   1.8e-12   5.3e-10       2      54 ..      43      93 ..      42      94 .. 0.96
   3 !    9.8   0.0    0.0023      0.67      24      47 ..     100     123 ..      95     123 .. 0.92
   4 !   31.0   0.2   5.7e-10   1.7e-07       2      48 ..     116     160 ..     115     163 .. 0.94

  Alignments for each domain:
  == domain 1  score: 3.9 bits;  conditional E-value: 0.16
   EF-hand_8 24 seeevdilfrefDtdgdGkis 44
                  +e+++ f+ fD dg G i+
  KOO21299.1 27 QLDEFREAFNSFDKDGGGSID 47
                4589**************998 PP

  == domain 2  score: 39.0 bits;  conditional E-value: 1.8e-12
   EF-hand_8  2 kgkItreelrrilrilglkkglseeevdilfrefDtdgdGkisfeEFcvller 54
                +g+I+  el++ ++++g++   ++ee+++++r +D dg G i+f EF+ l+++
  KOO21299.1 43 GGSIDARELKDLMASVGQN--PTDEELEEMIRIADADGTGDIDFAEFVTLMAH 93
                79***********999*99..******************************97 PP

  == domain 3  score: 9.8 bits;  conditional E-value: 0.0023
   EF-hand_8  24 seeevdilfrefDtdgdGkisfeE 47 
                 see +++ f+ fDt gdG i+ eE
  KOO21299.1 100 SEETLRAAFSVFDTSGDGFINAEE 123
                 7999****************9887 PP

  == domain 4  score: 31.0 bits;  conditional E-value: 5.7e-10
   EF-hand_8   2 kgkItreelrril.rilglkkglseeevdilfrefDtdgdGkisfeEF 48 
                 +g I  ee+rri+ ++ g +  ++ e+v+ ++r++D +gdG+i+++EF
  KOO21299.1 116 DGFINAEEMRRIMiNV-GEP--VTLEDVEQVIRKVDKNGDGAIDYDEF 160
                 899**********666.*99..************************** PP

>> EF-hand_6  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.6   0.2   2.4e-08     7e-06       1      29 [.      30      57 ..      30      59 .. 0.92
   2 !   10.0   0.1    0.0023      0.68       2      27 ..      67      92 ..      66      98 .. 0.84
   3 !   23.2   0.0   1.4e-07   4.1e-05       2      27 ..     104     129 ..     103     132 .. 0.91
   4 !   12.4   0.2   0.00039      0.11       7      25 ..     145     163 ..     139     163 .. 0.84

  Alignments for each domain:
  == domain 1  score: 25.6 bits;  conditional E-value: 2.4e-08
   EF-hand_6  1 elreaFklfDkdgdGkidaeElrkalrka 29
                e+reaF+ fDkdg G+ida El++++  +
  KOO21299.1 30 EFREAFNSFDKDGGGSIDARELKDLMA-S 57
                79**********************997.5 PP

  == domain 2  score: 10.0 bits;  conditional E-value: 0.0023
   EF-hand_6  2 lreaFklfDkdgdGkidaeElrkalr 27
                l+e  ++ D dg+G id++E++ ++ 
  KOO21299.1 67 LEEMIRIADADGTGDIDFAEFVTLMA 92
                56667889*************99886 PP

  == domain 3  score: 23.2 bits;  conditional E-value: 1.4e-07
   EF-hand_6   2 lreaFklfDkdgdGkidaeElrkalr 27 
                 lr+aF  fD++gdG+i+aeE+r+++ 
  KOO21299.1 104 LRAAFSVFDTSGDGFINAEEMRRIMI 129
                 89*********************996 PP

  == domain 4  score: 12.4 bits;  conditional E-value: 0.00039
   EF-hand_6   7 klfDkdgdGkidaeElrka 25 
                 ++ Dk+gdG id++E+ ka
  KOO21299.1 145 RKVDKNGDGAIDYDEFTKA 163
                 788*************775 PP

>> EF-hand_5  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.7   4.9e-05     0.014       2      25 .]      32      55 ..      31      55 .. 0.91
   2 !    8.6   0.2    0.0046       1.3       2      25 .]      68      91 ..      67      91 .. 0.89
   3 !   21.8   0.0     3e-07   8.7e-05       1      25 []     104     128 ..     104     128 .. 0.93
   4 !   20.4   0.1   8.2e-07   0.00024       3      22 ..     142     161 ..     140     164 .. 0.88

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 4.9e-05
                HHHHHHH-SS-SSCE-HHHHHHHH CS
   EF-hand_5  2 kdtFqaiDlNgDGkIskeELktlv 25
                +++F+ +D++g G I++ ELk l+
  KOO21299.1 32 REAFNSFDKDGGGSIDARELKDLM 55
                678******************986 PP

  == domain 2  score: 8.6 bits;  conditional E-value: 0.0046
                HHHHHHH-SS-SSCE-HHHHHHHH CS
   EF-hand_5  2 kdtFqaiDlNgDGkIskeELktlv 25
                +++ + +D++g G I++ E+ tl+
  KOO21299.1 68 EEMIRIADADGTGDIDFAEFVTLM 91
                677899**************9986 PP

  == domain 3  score: 21.8 bits;  conditional E-value: 3e-07
                 HHHHHHHH-SS-SSCE-HHHHHHHH CS
   EF-hand_5   1 lkdtFqaiDlNgDGkIskeELktlv 25 
                 l+++F+ +D+ gDG+I++eE ++++
  KOO21299.1 104 LRAAFSVFDTSGDGFINAEEMRRIM 128
                 6889******************976 PP

  == domain 4  score: 20.4 bits;  conditional E-value: 8.2e-07
                 HHHHHH-SS-SSCE-HHHHH CS
   EF-hand_5   3 dtFqaiDlNgDGkIskeELk 22 
                 ++ +++D+NgDG I+ +E+ 
  KOO21299.1 142 QVIRKVDKNGDGAIDYDEFT 161
                 5789**************95 PP

>> RuvB_N  Holliday junction DNA helicase RuvB P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.1   0.0   8.6e-08   2.5e-05      36     104 ..     385     461 ..     379     509 .. 0.66
   2 !   23.7   0.0   1.1e-07   3.4e-05      34      69 ..     656     691 ..     634     729 .. 0.84

  Alignments for each domain:
  == domain 1  score: 24.1 bits;  conditional E-value: 8.6e-08
      RuvB_N  36 vllyGpPGlGkttlakiiakelgvklkitsgPvl......ekagdlaalltnleek..dvlfideihrlsraveevl 104
                 +l++GpPG Gkt +a+ +a+e g+ +    gP +      e +++l   + + e++   ++fidei  ++++ e   
  KOO21299.1 385 ILMFGPPGSGKTLIARAVANETGAFFFLINGPEImsklagESESNLRKAFEEAEKNspAIIFIDEIDSIAPKREKTQ 461
                 89******************************8833222233456666666665552369*******9999877654 PP

  == domain 2  score: 23.7 bits;  conditional E-value: 1.1e-07
      RuvB_N  34 dhvllyGpPGlGkttlakiiakelgvklkitsgPvl 69 
                   vl+yGpPG Gkt lak ia+e ++++ +  gP l
  KOO21299.1 656 KGVLFYGPPGCGKTLLAKAIANECQANFISIKGPEL 691
                 569**************************9999987 PP

>> AAA_2  AAA domain (Cdc48 subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.5   0.0   9.6e-09   2.8e-06       6     106 ..     385     479 ..     380     489 .. 0.81
   2 !   18.7   0.0     5e-06    0.0015       6     104 ..     658     753 ..     653     760 .. 0.81

  Alignments for each domain:
  == domain 1  score: 27.5 bits;  conditional E-value: 9.6e-09
                 EEEE--TTSSHHHHHHHHHHHTT-....-EEEEEGGG-------THHHHHHHHHTTT-HHHHTTS..EEEEETGGG-------------HHHHHHHHHH CS
       AAA_2   6 illlgptgvGktelakalaellfvkkekkliradaselleeeevehlvsrligappgyvgaeegG..ivllDEidKihpkessgadvSregVqrdLLqi 102
                 il+ gp g+Gkt++a+a+a+   +     +  ++  e++     +   +++   +++  +ae++   i+++DEid i+pk+++++   +  ++  LL +
  KOO21299.1 385 ILMFGPPGSGKTLIARAVANETGA----FFFLINGPEIMS----KLAGESESNLRKAFEEAEKNSpaIIFIDEIDSIAPKREKTQGEVERRIVSQLLTL 475
                 8999****************9995....99**********....55556666666666666666677*************5555555555677889999 PP

                 HH-- CS
       AAA_2 103 legg 106
                 ++g 
  KOO21299.1 476 MDGL 479
                 9985 PP

  == domain 2  score: 18.7 bits;  conditional E-value: 5e-06
                 EEEE--TTSSHHHHHHHHHHHTT-....-EEEEEGGG---..----THHHHHHHHHTTT-HHHHTTSEEEEETGGG----.---------HH..HHHHH CS
       AAA_2   6 illlgptgvGktelakalaellfvkkekkliradaselle..eeevehlvsrligappgyvgaeegGivllDEidKihpk.essgadvSreg..VqrdL 99 
                 +l+ gp g+Gkt+laka+a+  ++    ++i +   ell+    e+e+ v +l  ++ g        ++++DE+d i++  +ssg d  + g  V + +
  KOO21299.1 658 VLFYGPPGCGKTLLAKAIANECQA----NFISIKGPELLTmwFGESESNVRELFDKARGAA----PCVLFFDELDSIARArGSSGGDAGGAGdrVINQI 748
                 79********************96....999999999999776777888888888877765....46************99888888765443377777 PP

                 HHHHH CS
       AAA_2 100 Lqile 104
                 L  ++
  KOO21299.1 749 LTEMD 753
                 76666 PP

>> CDC48_2  Cell division protein 48 (CDC48), domain 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.3   0.0   1.9e-14   5.6e-12       2      63 ..     271     335 ..     270     336 .. 0.97

  Alignments for each domain:
  == domain 1  score: 45.3 bits;  conditional E-value: 1.9e-14
                 .SCCCCH.HHHCCCTT..EEE-TTEEEEECCTCCCEEEEEEEECCCCSCEEECTSCCEEESTTCC CS
     CDC48_2   2 idgdema.ylkrqFlg..rpvtkGdlvvfefkgqeiklvVvstePkgpvgitetTeielgtkpve 63 
                 i g++++  lk +F+   rpv kGdl+ ++  +++++++Vv+t+P + +++ ++T i+++ +pv+
  KOO21299.1 271 ITGNLFDvFLKPYFMEayRPVRKGDLFLVRGGMRAVEFKVVETDPEDYCIVAPDTVIHCEGDPVK 335
                 7899***********************************************************97 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.2   0.0   5.1e-08   1.5e-05       2      80 ..     385     493 ..     385     548 .. 0.74
   2 !   15.1   0.0   6.7e-05      0.02       2      42 ..     658     700 ..     658     733 .. 0.83

  Alignments for each domain:
  == domain 1  score: 25.2 bits;  conditional E-value: 5.1e-08
      AAA_33   2 vllvGlpGsGKstlaerllkklg..avllssdtlrrrlfgtdqqskt............................dytrvldrlyqilnelarkalsag 70 
                 +l+ G+pGsGK+  a+ +++++g  ++l++ ++++++l+g+ + +++                             + +v+ r+  +l  l  + l+a+
  KOO21299.1 385 ILMFGPPGSGKTLIARAVANETGafFFLINGPEIMSKLAGESESNLRkafeeaeknspaiifideidsiapkrekTQGEVERRIVSQLLTLM-DGLKAR 482
                 689*********************999******99999995555444556666666777888888888888876655667777777775665.567777 PP

      AAA_33  71 rn.vildatnl 80 
                 ++ v++ atn+
  KOO21299.1 483 AHvVVIGATNR 493
                 77244455554 PP

  == domain 2  score: 15.1 bits;  conditional E-value: 6.7e-05
      AAA_33   2 vllvGlpGsGKstlaerllkklg..avllssdtlrrrlfgtdq 42 
                 vl+ G+pG+GK+ la+ ++++ +  ++ +  ++l+++ fg+ +
  KOO21299.1 658 VLFYGPPGCGKTLLAKAIANECQanFISIKGPELLTMWFGESE 700
                 799****************999988888888888888887543 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.0   3.2e-05    0.0094      24     139 ..     382     487 ..     371     488 .. 0.69
   2 !   19.4   0.0   3.7e-06    0.0011      25      74 ..     656     696 ..     647     752 .. 0.68

  Alignments for each domain:
  == domain 1  score: 16.3 bits;  conditional E-value: 3.2e-05
      AAA_16  24 pelvllsGesGvGKsslvrellralekdggiflrgkcdqlesaipysalaqalareellrqlldeaesaeleawrekleealaavpelagaeasrllel 122
                 p+ +l  G++G+GK+ ++r++++   ++g++f+  +  +      +s la    ++ l ++ +++++++ +  + +++++ +    +  g+ ++r+  +
  KOO21299.1 382 PRGILMFGPPGSGKTLIARAVAN---ETGAFFFLINGPEI-----MSKLAGES-ESNLRKAFEEAEKNSPAIIFIDEIDSIAPKREKTQGEVERRIVSQ 471
                 58999*****************6...66777877777777.....33344444.446666666665555555555555555555555555555999999 PP

      AAA_16 123 lkrllallsrderplvl 139
                 l  l++ l+ +++ +v+
  KOO21299.1 472 LLTLMDGLKARAH-VVV 487
                 9999999999899.665 PP

  == domain 2  score: 19.4 bits;  conditional E-value: 3.7e-06
      AAA_16  25 elvllsGesGvGKsslvrellralekdggiflrgkcdqlesaipysalaq 74 
                   vl++G++G+GK+ l+++++++ +++   f++ k  +l      ++ + 
  KOO21299.1 656 KGVLFYGPPGCGKTLLAKAIANECQAN---FISIKGPEL------LTMWF 696
                 78*******************999998...888888877......33333 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.9   0.0   1.1e-07   3.3e-05       2     136 ..     385     503 ..     384     505 .. 0.74
   2 !   13.6   0.0   0.00017      0.05       2      32 ..     658     688 ..     657     729 .. 0.83

  Alignments for each domain:
  == domain 1  score: 23.9 bits;  conditional E-value: 1.1e-07
                 EEEE--SSSSHHHHHHHGGGGBS--EEEEE--TT--HHHHH--B--.........--------.....G-SEEEEESGGG--HH...HHHHHHHHHHSS CS
       AAA_5   2 vlLvGppGtgKselaerlaaalnreveyvqltrdtteedlkgrreikngttslvdsplvraar.....egeilvlDEveraese...vlnsLlslleer 92 
                 +l+ GppG+gK+ +a+ +a  +++ ++ +++++ ++  +l g+ e          s l +a++     +++i+++DE++ + ++   +++++ + +   
  KOO21299.1 385 ILMFGPPGSGKTLIARAVANETGAFFFLINGPEIMS--KLAGESE----------SNLRKAFEeaeknSPAIIFIDEIDSIAPKrekTQGEVERRIVS- 470
                 799******************************887..5788888..........5555555555577***********9986611145555444444. PP

                 EEE..-SSSEEE---......-EEEEEESS--.-TT-TTHHHHT CS
       AAA_5  93 rllleeggelvkaknddllerfrviatanpldrslnelspalrs 136
                      ++ +l++  +      + vi+++n+++    +++palr+
  KOO21299.1 471 -----QLLTLMDGLKA--RAHVVVIGATNRPN----SIDPALRR 503
                 .....44444444331..22299******999....99999986 PP

  == domain 2  score: 13.6 bits;  conditional E-value: 0.00017
                 EEEE--SSSSHHHHHHHGGGGBS--EEEEE- CS
       AAA_5   2 vlLvGppGtgKselaerlaaalnreveyvql 32 
                 vl  GppG+gK+ la+ +a   ++++  + +
  KOO21299.1 658 VLFYGPPGCGKTLLAKAIANECQANFISIKG 688
                 899***************9988888766655 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.7   0.0   0.00078      0.23       8      29 ..     385     406 ..     380     418 .. 0.85
   2 ?    6.2   0.0     0.039        12      73     131 ..     425     491 ..     416     495 .. 0.76
   3 !   13.5   0.0   0.00022     0.064       9      43 ..     659     692 ..     653     714 .. 0.72

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.00078
      AAA_22   8 lvvtGesGtGKTtllrrlleql 29 
                 ++ +G++G+GKT+ +r ++++ 
  KOO21299.1 385 ILMFGPPGSGKTLIARAVANET 406
                 6789*************99986 PP

  == domain 2  score: 6.2 bits;  conditional E-value: 0.039
      AAA_22  73 lsseellealeqalraravielliiDEaqhlr....s......eealeeLrsllnlsrkgvqliLvGtp 131
                  s++ l++a+e+a ++  +  ++ iDE++ +     +       +++++L +l++  +   +++++G +
  KOO21299.1 425 ESESNLRKAFEEAEKNSPA--IIFIDEIDSIApkreKtqgeveRRIVSQLLTLMDGLKARAHVVVIGAT 491
                 6788899999999998888..**********88755156677788888888888876677777777765 PP

  == domain 3  score: 13.5 bits;  conditional E-value: 0.00022
      AAA_22   9 vvtGesGtGKTtllrrlleqldeeakaeeerpevv 43 
                 + +G++G+GKT+l++ ++++  +++++  ++pe++
  KOO21299.1 659 LFYGPPGCGKTLLAKAIANEC-QANFISIKGPELL 692
                 679***************995.4444444555555 PP

>> EF-hand_9  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.4   0.0   1.9e-07   5.5e-05       3      64 ..      34      93 ..      32      95 .. 0.95
   2 ?    6.8   0.0     0.028       8.2       3      60 ..     107     162 ..     105     166 .. 0.88
   3 ?   -0.7   0.0       6.5   1.9e+03      24      43 ..     525     546 ..     521     549 .. 0.78

  Alignments for each domain:
  == domain 1  score: 23.4 bits;  conditional E-value: 1.9e-07
   EF-hand_9  3 vFevcDtqktGrVpvsrlidyLravtaqdpeeseLeelakelDPdgedasvdldtflrvmre 64
                 F+ +D +  G +   +l+d++  v++ +p++ eLee  + +D dg  + +d+  f + m +
  KOO21299.1 34 AFNSFDKDGGGSIDARELKDLMASVGQ-NPTDEELEEMIRIADADGT-GDIDFAEFVTLMAH 93
                5999***********************.*******************.**********9975 PP

  == domain 2  score: 6.8 bits;  conditional E-value: 0.028
   EF-hand_9   3 vFevcDtqktGrVpvsrlidyLravtaqdpees.eLeelakelDPdgedasvdldtflr 60 
                  F+v+Dt   G +   ++  ++  v+++ +  + ++e+  +++D +g  + +d d f +
  KOO21299.1 107 AFSVFDTSGDGFINAEEMRRIMINVGEPVT--LeDVEQVIRKVDKNGD-GAIDYDEFTK 162
                 6*************************9444..449*********8887.9******975 PP

  == domain 3  score: -0.7 bits;  conditional E-value: 6.5
   EF-hand_9  24 Lravtaq..dpeeseLeelake 43 
                 +r+ t++   +e+++Le+lake
  KOO21299.1 525 MRIHTKNmkLTEDVDLEQLAKE 546
                 67777775568999*****997 PP

>> TIP49  TIP49 P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5   0.0   6.3e-06    0.0019      51     107 ..     383     434 ..     375     483 .. 0.78
   2 !   12.6   0.0   0.00019     0.057      50      91 ..     655     694 ..     648     711 .. 0.85

  Alignments for each domain:
  == domain 1  score: 17.5 bits;  conditional E-value: 6.3e-06
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
       TIP49  51 ravLlaGpsgtGktalaiaiskelgedvpfvalsgsevyslevkktevltqalrksi 107
                 r++L+ Gp+g+Gkt +a a+++e g    f  ++g e+ s     +e    +lrk+ 
  KOO21299.1 383 RGILMFGPPGSGKTLIARAVANETG--AFFFLINGPEIMSKLAGESES---NLRKAF 434
                 89*********************99..78999******9987777763...555554 PP

  == domain 2  score: 12.6 bits;  conditional E-value: 0.00019
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
       TIP49  50 GravLlaGpsgtGktalaiaiskelgedvpfvalsgsevysl 91 
                  ++vL+ Gp+g Gkt la ai++e      f++++g e+ ++
  KOO21299.1 655 SKGVLFYGPPGCGKTLLAKAIANECQ--ANFISIKGPELLTM 694
                 589*********************87..78999999998765 PP

>> AAA_14  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.0   6.3e-05     0.018       5      99 ..     385     489 ..     382     507 .. 0.72
   2 !   12.7   0.0   0.00033     0.098       5      78 ..     658     728 ..     655     764 .. 0.81

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 6.3e-05
      AAA_14   5 lvitGaRrvGKTtllkqlikellvkkesilyinldderdkkladpe.kllelileklkeekktylflDEiqev............pewekalkslvd.e 89 
                 +++ G+  +GKT +++ +++e       ++ in  +   k + ++e +l +++ e  +++   ++f+DEi  +            +++ + l  l+d  
  KOO21299.1 385 ILMFGPPGSGKTLIARAVANETG---AFFFLINGPEIMSKLAGESEsNLRKAFEEA-EKNSPAIIFIDEIDSIapkrektqgeveRRIVSQLLTLMDgL 479
                 5678999************9988...778888888877755555552455666665.455999*******99977777777666666666666666642 PP

      AAA_14  90 gknldvivtG 99 
                 + + +v+v G
  KOO21299.1 480 KARAHVVVIG 489
                 2455666666 PP

  == domain 2  score: 12.7 bits;  conditional E-value: 0.00033
      AAA_14   5 lvitGaRrvGKTtllkqlikellvkkesilyinldderdkkladpekllelileklkeekktylflDEiqevpe 78 
                 ++  G+  +GKT l+k +++e      +++ i+  +  +  + ++e++ +++++k+++    +lf+DE   + +
  KOO21299.1 658 VLFYGPPGCGKTLLAKAIANECQ---ANFISIKGPELLTMWFGESESNVRELFDKARGAAPCVLFFDELDSIAR 728
                 6778999*******999997766...7777777777777666666666677777666668899*****987755 PP

>> Mg_chelatase  Magnesium chelatase, subunit ChlI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.6   0.1   0.00011     0.032      25      42 ..     385     402 ..     376     406 .. 0.89
   2 !   13.3   0.0   0.00013     0.039      25      43 ..     658     676 ..     652     680 .. 0.90

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 0.00011
  Mg_chelatase  25 lllvGppGsGKtmlakrl 42 
                   +l++GppGsGKt++a+++
    KOO21299.1 385 ILMFGPPGSGKTLIARAV 402
                   89*************987 PP

  == domain 2  score: 13.3 bits;  conditional E-value: 0.00013
  Mg_chelatase  25 lllvGppGsGKtmlakrlp 43 
                   +l++GppG+GKt+lak+++
    KOO21299.1 658 VLFYGPPGCGKTLLAKAIA 676
                   89**************985 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.5   0.0   0.00057      0.17       1      25 [.     385     423 ..     385     489 .. 0.73
   2 !   13.2   0.0   0.00033     0.096       1      25 [.     658     700 ..     658     731 .. 0.71

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 0.00057
      AAA_18   1 IlltGtpGvGKttlakeLskrl.gf.............g 25 
                 Il  G+pG+GKt +a+++++++ +f              
  KOO21299.1 385 ILMFGPPGSGKTLIARAVANETgAFfflingpeimsklA 423
                 7889***************99855566666544444440 PP

  == domain 2  score: 13.2 bits;  conditional E-value: 0.00033
      AAA_18   1 IlltGtpGvGKttlakeLskrl.gf.................g 25 
                 +l  G+pG+GKt lak++++++ ++                  
  KOO21299.1 658 VLFYGPPGCGKTLLAKAIANECqANfisikgpelltmwfgesE 700
                 6789****************98544565555555555555552 PP

>> Viral_helicase1  Viral (Superfamily 1) RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.2   0.0      0.87   2.6e+02      50      89 ..     157     195 ..     131     202 .. 0.79
   2 ?    5.1   0.0     0.056        17       2      71 ..     386     450 ..     385     455 .. 0.60
   3 !   17.4   0.0   9.4e-06    0.0028       5      70 ..     662     722 ..     658     728 .. 0.91

  Alignments for each domain:
  == domain 1  score: 1.2 bits;  conditional E-value: 0.87
  Viral_helicase1  50 vdsflmalvkstkgkililDEylllhaGyill.laalskak 89 
                       d+f++a++k    ++l++DE+   +  ++ l la++++++
       KOO21299.1 157 YDEFTKAKKKN--PNRLLVDEASNDDNSVVALsLATMEELQ 195
                      57788888876..8********9999999988888777654 PP

  == domain 2  score: 5.1 bits;  conditional E-value: 0.056
  Viral_helicase1   2 vvhGvpGcGKStlirkllrts..liltvnrptaelltegkpklpnlsvrtvdsflmalvkstkgkililDEy 71 
                      ++ G pG+GK+ + r ++++     + +n p  e+ ++ + +++++     ++f++a ++s    i+++DE+
       KOO21299.1 386 LMFGPPGSGKTLIARAVANETgaFFFLINGP--EIMSKLAGESESN---LRKAFEEAEKNS--PAIIFIDEI 450
                      66799*************9966433333333..3333333333333...334455555444..579999997 PP

  == domain 3  score: 17.4 bits;  conditional E-value: 9.4e-06
  Viral_helicase1   5 GvpGcGKStlirkllrts.liltvnrptaelltegkpklpnlsvrtvdsflmalvkstkgkililDE 70 
                      G pGcGK+ l + +++++  ++ +++   ellt+++ +++++  + +d++  a+ +     +l++DE
       KOO21299.1 662 GPPGCGKTLLAKAIANECqANFISIKG-PELLTMWFGESESNVRELFDKARGAAPC-----VLFFDE 722
                      78*****************99999999.9***********99999***99999875.....799999 PP

>> RNA_helicase  RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.4   0.0    0.0096       2.8       1      24 [.     385     408 ..     385     451 .. 0.84
   2 !   16.4   0.0   3.1e-05     0.009       1      26 [.     658     683 ..     658     721 .. 0.79

  Alignments for each domain:
  == domain 1  score: 8.4 bits;  conditional E-value: 0.0096
  RNA_helicase   1 iwlyGpsgeGKStlakeLakallk 24 
                   i+++Gp+g GK+++a+ +a++   
    KOO21299.1 385 ILMFGPPGSGKTLIARAVANETGA 408
                   689**************9988665 PP

  == domain 2  score: 16.4 bits;  conditional E-value: 3.1e-05
  RNA_helicase   1 iwlyGpsgeGKStlakeLakallkkl 26 
                   +++yGp+g+GK++lak +a++ + ++
    KOO21299.1 658 VLFYGPPGCGKTLLAKAIANECQANF 683
                   689****************9998766 PP

>> Vps4_C  Vps4 C terminal oligomerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.5   0.0       4.3   1.3e+03      28      41 ..     134     147 ..     128     150 .. 0.88
   2 !   24.0   0.1   9.6e-08   2.8e-05      26      58 ..     873     905 ..     862     907 .. 0.92

  Alignments for each domain:
  == domain 1  score: -0.5 bits;  conditional E-value: 4.3
      Vps4_C  28 pvtlkDflkalkka 41 
                 pvtl+D++++++k+
  KOO21299.1 134 PVTLEDVEQVIRKV 147
                 8**********986 PP

  == domain 2  score: 24.0 bits;  conditional E-value: 9.6e-08
      Vps4_C  26 ePpvtlkDflkalkkarptVskeDLekheeFTk 58 
                  P++t  +f++++k+ar++Vs++D++k+e F +
  KOO21299.1 873 VPEITKFHFEESMKHARRSVSDNDIRKYEMFSQ 905
                 489****************************87 PP

>> IstB_IS21  IstB-like ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.8   0.0     0.001       0.3      49      71 ..     384     406 ..     377     462 .. 0.70
   2 !   12.9   0.0   0.00023     0.067      48      72 ..     656     680 ..     651     687 .. 0.83

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.001
   IstB_IS21  49 nivllGpsGvGKshlaialgvea 71 
                 +i+++Gp+G GK+ +a a++ e+
  KOO21299.1 384 GILMFGPPGSGKTLIARAVANET 406
                 799***************98763 PP

  == domain 2  score: 12.9 bits;  conditional E-value: 0.00023
   IstB_IS21  48 enivllGpsGvGKshlaialgveav 72 
                 +++++ Gp+G GK+ la a++ e  
  KOO21299.1 656 KGVLFYGPPGCGKTLLAKAIANECQ 680
                 6899****************98754 PP

>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.0   0.0     0.027         8       7      35 ..     378     406 ..     375     584 .. 0.88
   2 !   15.0   0.0   9.4e-05     0.028       6      42 ..     650     684 ..     648     753 .. 0.85

  Alignments for each domain:
  == domain 1  score: 7.0 bits;  conditional E-value: 0.027
                 EEETTSEEEEEESTTSSHHHHHHHHTTSS CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran   7 klkegekvaivGenGaGKStLlkllagll 35 
                  +k+ + + ++G+ G+GK+ +++++a+++
  KOO21299.1 378 GVKPPRGILMFGPPGSGKTLIARAVANET 406
                 56677778899************999875 PP

  == domain 2  score: 15.0 bits;  conditional E-value: 9.4e-05
                 EEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran   6 lklkegekvaivGenGaGKStLlkllagllkpteGei 42 
                 + +++++ v + G+ G+GK+ L+k++a++ +     i
  KOO21299.1 650 FGMQPSKGVLFYGPPGCGKTLLAKAIANECQA--NFI 684
                 78899999*******************99764..444 PP

>> AAA_17  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.2   0.0    0.0012      0.37       1      55 [.     388     443 ..     388     470 .. 0.68
   2 !    9.4   0.0    0.0044       1.3       1      25 [.     661     685 ..     661     702 .. 0.90

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.0012
                 EE-TTSSHHHHHHHHHHHHT..EEEEEHHHHHHHHHHTTTSHSSHHHHCTSHHHHHH CS
      AAA_17   1 lGgPGsGKgtqceklvekyg..fthlsaGdllreeakrgglakardemrklpleekk 55 
                 +G+PGsGK+ +++ ++ + g  f  ++  +++ + a ++++ + r+++++++++   
  KOO21299.1 388 FGPPGSGKTLIARAVANETGafFFLINGPEIMSKLAGESES-NLRKAFEEAEKNSPA 443
                 6***************9997535556666666677666654.556666655554444 PP

  == domain 2  score: 9.4 bits;  conditional E-value: 0.0044
                 EE-TTSSHHHHHHHHHHHHTEEEEE CS
      AAA_17   1 lGgPGsGKgtqceklvekygfthls 25 
                 +G+PG+GK+ +++ ++ + +  ++s
  KOO21299.1 661 YGPPGCGKTLLAKAIANECQANFIS 685
                 7***************999877776 PP

>> ATPase_2  ATPase domain predominantly from Archaea
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.1       4.8   1.4e+03     104     144 ..     138     175 ..      87     179 .. 0.74
   2 ?   -1.6   0.2         7   2.1e+03     111     133 ..     204     227 ..     140     237 .. 0.51
   3 ?    7.3   0.0     0.014         4      22      72 ..     384     428 ..     372     488 .. 0.57
   4 !   11.4   0.0   0.00077      0.23      18      44 ..     653     679 ..     648     686 .. 0.83

  Alignments for each domain:
  == domain 1  score: -1.0 bits;  conditional E-value: 4.8
    ATPase_2 104 kaielllekikkkgkkiiiiiDelqklidlglngaellvke 144
                 + +e++++k+ k+g   +i  De+ k++  + n ++llv+e
  KOO21299.1 138 EDVEQVIRKVDKNGD-GAIDYDEFTKAK--KKNPNRLLVDE 175
                 456666677776665.688899999999..88888998877 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 7
    ATPase_2 111 ekikkkgkk.iiiiiDelqklidl 133
                  k k+++    i+++D+  + +++
  KOO21299.1 204 LKGKRRKDTvCIVLADDTCEPGKI 227
                 222222222466666666666655 PP

  == domain 3  score: 7.3 bits;  conditional E-value: 0.014
    ATPase_2  22 iyfiYGpegsGKtaLlkeiienledkdkyviyyialreesiskldefieee 72 
                  ++ +Gp gsGKt + + ++++        +++i+  e+ ++ + e+  e+
  KOO21299.1 384 GILMFGPPGSGKTLIARAVANETG----AFFFLINGPEIMSKLAGES--ES 428
                 57899*******988888888773....3566666666666555555..22 PP

  == domain 4  score: 11.4 bits;  conditional E-value: 0.00077
    ATPase_2  18 epneiyfiYGpegsGKtaLlkeiienl 44 
                 +p++ ++ YGp g+GKt L k i+++ 
  KOO21299.1 653 QPSKGVLFYGPPGCGKTLLAKAIANEC 679
                 56667889*************999976 PP

>> AAA_28  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.7   0.0    0.0063       1.9       2      37 ..     385     425 ..     384     478 .. 0.68
   2 !   11.1   0.0    0.0012      0.35       2      30 ..     658     691 ..     657     717 .. 0.74
   3 ?   -1.3   0.0       7.6   2.2e+03      45      86 ..     834     873 ..     820     891 .. 0.75

  Alignments for each domain:
  == domain 1  score: 8.7 bits;  conditional E-value: 0.0063
      AAA_28   2 ivitGgestGKTtlleaLaar.gypvv....pEaareilee 37 
                 i ++G++++GKT +++a a++ g   +    pE++ ++  e
  KOO21299.1 385 ILMFGPPGSGKTLIARAVANEtGAFFFlingPEIMSKLAGE 425
                 6789***************7655544411344444444433 PP

  == domain 2  score: 11.1 bits;  conditional E-value: 0.0012
      AAA_28   2 ivitGgestGKTtlleaLaar...gypvv..pEa 30 
                 + + G++++GKT l++a+a++   ++  +  pE 
  KOO21299.1 658 VLFYGPPGCGKTLLAKAIANEcqaNFISIkgPEL 691
                 6799***************765443333335555 PP

  == domain 3  score: -1.3 bits;  conditional E-value: 7.6
      AAA_28  45 alpwvedllafaervleeqleeeaaaaankvlfcDrglldtl 86 
                 +++  + ++a++e  +e+++e e+++aa++   +D +++d++
  KOO21299.1 834 ICQR-AAKMAIRES-IEKEIEMEKERAASGADGMDADVVDPV 873
                 4444.367777777.456788888888888888888888875 PP

>> Zeta_toxin  Zeta toxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.8   0.0    0.0015      0.43      14      40 ..     380     406 ..     372     413 .. 0.88
   2 !    9.4   0.0     0.002       0.6      19      51 ..     658     688 ..     648     695 .. 0.86

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.0015
  Zeta_toxin  14 erPklillgGqpGAGKselaellkdel 40 
                 + P  il+ G pG+GK+ +a+++++e+
  KOO21299.1 380 KPPRGILMFGPPGSGKTLIARAVANET 406
                 568889*****************9986 PP

  == domain 2  score: 9.4 bits;  conditional E-value: 0.002
  Zeta_toxin  19 illgGqpGAGKselaellkdelerqgnvvrldp 51 
                 +l  G pG+GK+ la+++++e   q n++ +++
  KOO21299.1 658 VLFYGPPGCGKTLLAKAIANEC--QANFISIKG 688
                 566799***************9..999999986 PP

>> ATPase  KaiC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.3   0.0     0.077        23      18      37 ..     381     400 ..     372     408 .. 0.83
   2 ?    5.3   0.0     0.036        11     122     156 ..     444     481 ..     414     501 .. 0.69
   3 !    7.3   0.0    0.0093       2.7      13      37 ..     649     673 ..     640     684 .. 0.83

  Alignments for each domain:
  == domain 1  score: 4.3 bits;  conditional E-value: 0.077
      ATPase  18 egrvvlitGepGtGKtifal 37 
                   r +l+ G pG+GKt++a 
  KOO21299.1 381 PPRGILMFGPPGSGKTLIAR 400
                 5577999**********985 PP

  == domain 2  score: 5.3 bits;  conditional E-value: 0.036
      ATPase 122 rvviDsitgl...ayeekeavaReilrqlvrvlkklgv 156
                  + iD i+++    ++++ +v R+i+ ql++ + +l+ 
  KOO21299.1 444 IIFIDEIDSIapkREKTQGEVERRIVSQLLTLMDGLKA 481
                 4455555555321666677789***********88775 PP

  == domain 3  score: 7.3 bits;  conditional E-value: 0.0093
      ATPase  13 kgGipegrvvlitGepGtGKtifal 37 
                 k G+   + vl +G pG+GKt++a+
  KOO21299.1 649 KFGMQPSKGVLFYGPPGCGKTLLAK 673
                 5578888899*************97 PP

>> Sigma54_activat  Sigma-54 interaction domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.5   0.0    0.0026      0.75      23     108 ..     383     456 ..     372     504 .. 0.63
   2 !    8.6   0.0    0.0046       1.4      23      51 ..     656     681 ..     641     725 .. 0.84

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 0.0026
                      S-EEEECSTTSSHHHHHHHHHHHSTTTTS-EEEEETTTS-TTCHHHHHHEBSSSSSTTTSS-BEHHHHHTTTSEEEEETGGGS-HH CS
  Sigma54_activat  23 lsvlitGesGtGKellaraiheaskrkekpfvavncaaipeelleseLFGhekGaFtGAekekkGlfekadgGtlfLDeigelple 108
                        +l+ G  G+GK+l+ara+ +++    + f  +n  +i ++l      G ++     A +e     ek +  ++f+Dei ++ ++
       KOO21299.1 383 RGILMFGPPGSGKTLIARAVANET---GAFFFLINGPEIMSKLA-----GESESNLRKAFEEA----EKNSPAIIFIDEIDSIAPK 456
                      5699***************97654...57788888877655554.....44333333333322....4445677788888777664 PP

  == domain 2  score: 8.6 bits;  conditional E-value: 0.0046
                      S-EEEECSTTSSHHHHHHHHHHHSTTTTS CS
  Sigma54_activat  23 lsvlitGesGtGKellaraiheaskrkek 51 
                        vl  G  G+GK+lla+ai ++ +   +
       KOO21299.1 656 KGVLFYGPPGCGKTLLAKAIANECQ---A 681
                      569*****************98766...3 PP

>> AAA_7  P-loop containing dynein motor region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.9   0.0     0.014         4      34      57 ..     383     406 ..     372     471 .. 0.80
   2 !   11.6   0.0   0.00051      0.15      31      63 ..     653     684 ..     647     689 .. 0.84

  Alignments for each domain:
  == domain 1  score: 6.9 bits;  conditional E-value: 0.014
       AAA_7  34 kpvllvGptGtGKtviikdllkkl 57 
                 + +l+ Gp G+GKt+i++ + ++ 
  KOO21299.1 383 RGILMFGPPGSGKTLIARAVANET 406
                 679*************99988765 PP

  == domain 2  score: 11.6 bits;  conditional E-value: 0.00051
       AAA_7  31 knkkpvllvGptGtGKtviikdllkkldkekyl 63 
                 + +k vl++Gp G+GKt+++k + ++++  +++
  KOO21299.1 653 QPSKGVLFYGPPGCGKTLLAKAIANECQ-ANFI 684
                 66799*****************999988.5554 PP

>> Parvo_NS1  Parvovirus non-structural protein NS1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.3   0.0     0.031       9.1     117     140 ..     385     408 ..     378     414 .. 0.86
   2 !   13.1   0.0   0.00013     0.038     116     138 ..     657     679 ..     651     682 .. 0.88

  Alignments for each domain:
  == domain 1  score: 5.3 bits;  conditional E-value: 0.031
   Parvo_NS1 117 vwfyGpantGktnlaeaIakavpl 140
                 ++++Gp+  Gkt +a+a a+ +  
  KOO21299.1 385 ILMFGPPGSGKTLIARAVANETGA 408
                 7899**************997665 PP

  == domain 2  score: 13.1 bits;  conditional E-value: 0.00013
   Parvo_NS1 116 tvwfyGpantGktnlaeaIakav 138
                  v+fyGp+ +Gkt la+aIa+ +
  KOO21299.1 657 GVLFYGPPGCGKTLLAKAIANEC 679
                 599*****************966 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.0       6.2   1.8e+03     123     160 ..     133     169 ..      97     210 .. 0.63
   2 ?    3.2   0.0       0.2        58      36      52 ..     385     401 ..     381     406 .. 0.85
   3 ?    7.4   0.0      0.01         3     131     187 ..     431     489 ..     415     496 .. 0.81
   4 ?    7.0   0.0     0.013       3.8      36      54 ..     658     676 ..     651     748 .. 0.90

  Alignments for each domain:
  == domain 1  score: -1.7 bits;  conditional E-value: 6.2
      AAA_25 123 gtlltadvdaleaaieevegvrlvviDplsralggden 160
                 ++++ +dv+++++++++ +g + +  D +++a   ++n
  KOO21299.1 133 EPVTLEDVEQVIRKVDK-NGDGAIDYDEFTKAKKKNPN 169
                 44455777777777777.66666666666666555333 PP

  == domain 2  score: 3.2 bits;  conditional E-value: 0.2
      AAA_25  36 allaGapgtGKttlald 52 
                 +l +G+pg+GKt +a  
  KOO21299.1 385 ILMFGPPGSGKTLIARA 401
                 5789********99865 PP

  == domain 3  score: 7.4 bits;  conditional E-value: 0.01
      AAA_25 131 daleaaieevegvrlvviDplsralggdensnsdv.galvealeriar..rtgaavllvh 187
                 ++  +++e+ + ++ + iD ++++ +  e+ + +v +++v++l  + +  + +a+v+++ 
  KOO21299.1 431 RKAFEEAEK-NSPAIIFIDEIDSIAPKREKTQGEVeRRIVSQLLTLMDglKARAHVVVIG 489
                 444556666.66**********************99*********998667778888875 PP

  == domain 4  score: 7.0 bits;  conditional E-value: 0.013
      AAA_25  36 allaGapgtGKttlaldla 54 
                 +l++G+pg+GKt la  +a
  KOO21299.1 658 VLFYGPPGCGKTLLAKAIA 676
                 689***********97766 PP

>> Bac_DnaA  Bacterial dnaA  protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.7   0.0    0.0023      0.67      37     190 ..     385     538 ..     379     560 .. 0.76
   2 !    9.1   0.0    0.0037       1.1      37      63 ..     658     684 ..     649     693 .. 0.89

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 0.0023
                 EEEE-SSSSSHHHHHHHHHHHHHHHSSSS-EEEEEHHHHHHHHHHHHHTT-HHHHHHHHTT-.SEEEEE-GGGGTT-.HHHHHH........HHHHHHH CS
    Bac_DnaA  37 lfiygevGlGktHLlkaignevlenapelrvvYltaeeFlnelvkalrdkkaeefkeklrkv.DvLliDDiqflagk.ektqee........lfhtfna 125
                 ++++g+ G Gkt + +a++ne+      +    +++ e +++l+   +++  ++f e  ++   ++ iD+i  +a k ektq e        l+++++ 
  KOO21299.1 385 ILMFGPPGSGKTLIARAVANETG-----AFFFLINGPEIMSKLAGESESNLRKAFEEAEKNSpAIIFIDEIDSIAPKrEKTQGEverrivsqLLTLMDG 478
                 68999*******99999988765.....5567899********************999886516788*******9763677765223322225667777 PP

                 HHTTT-EEEEEESS-TTT-SS--HHHHHHHHSSEEEE-----HHHHHHHHHHHHHHTT----TTH CS
    Bac_DnaA 126 lleegkqvvlssDrsPkeleeledrlrsrfeaGlvvdieppdletrlailkkkieaeklevpeev 190
                 l   ++ vv+ +   P++++    r+  rf++   vdi  pd++ rl++++  i++++++++e+v
  KOO21299.1 479 LKARAHVVVIGATNRPNSIDPALRRF-GRFDRE--VDIGVPDENGRLEVMR--IHTKNMKLTEDV 538
                 77788899********9988766554.688875..6777899999999986..566666666666 PP

  == domain 2  score: 9.1 bits;  conditional E-value: 0.0037
                 EEEE-SSSSSHHHHHHHHHHHHHHHSS CS
    Bac_DnaA  37 lfiygevGlGktHLlkaignevlenap 63 
                 +++yg+ G Gkt L kai+ne ++n+ 
  KOO21299.1 658 VLFYGPPGCGKTLLAKAIANECQANFI 684
                 79*******************998875 PP

>> TsaE  Threonylcarbamoyl adenosine biosynthesis protein TsaE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.5   0.0     0.027       7.9      20      44 ..     383     407 ..     355     417 .. 0.79
   2 !   11.4   0.0   0.00079      0.23      13      51 ..     653     689 ..     633     694 .. 0.77

  Alignments for each domain:
  == domain 1  score: 6.5 bits;  conditional E-value: 0.027
                 EEEEEEESTTSSHHHHHHHHHHHTT CS
        TsaE  20 dvilLeGdLGaGKTtlvrglakalg 44 
                 + il+ G+ G+GKT ++r++a++ g
  KOO21299.1 383 RGILMFGPPGSGKTLIARAVANETG 407
                 3499****************99877 PP

  == domain 2  score: 11.4 bits;  conditional E-value: 0.00079
                 HHHHCHTEEEEEEESTTSSHHHHHHHHHHHTT--..----T CS
        TsaE  13 klakalgdvilLeGdLGaGKTtlvrglakalgve..evkSP 51 
                 +     ++ +l++G+ G+GKT l++++a++++ +  ++k P
  KOO21299.1 653 QP----SKGVLFYGPPGCGKTLLAKAIANECQANfiSIKGP 689
                 22....4479*******************998876667666 PP

>> Sigma54_activ_2  Sigma-54 interaction domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.5   0.0    0.0034         1      24      86 ..     385     458 ..     379     499 .. 0.64
   2 ?    7.7   0.0     0.012       3.5      22      81 ..     656     726 ..     642     731 .. 0.63

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 0.0034
                      EEEEEETT--HHHHHHCC--TTS-EE....--SSTTHHHH-H.......HHHHHHTTTSEEEEEE-TT--HHHH CS
  Sigma54_activ_2  24 vfltGekGsgkelvArlLhknsgpwl....eifvverlaklp.......ldlleqakggtLylkdiadlskaeq 86 
                      +++ G++Gsgk+l+Ar+ +++ g        + ++ +la +         +  e+ +++++++ +i+++ ++  
       KOO21299.1 385 ILMFGPPGSGKTLIARAVANETGAFFflinGPEIMSKLAGESesnlrkaFEEAEKNSPAIIFIDEIDSIAPKRE 458
                      6899****************9998651111445555555433333433333444459999****9999976543 PP

  == domain 2  score: 7.7 bits;  conditional E-value: 0.012
                      S-EEEEEETT--HHHHHHCC--TTS-EE--SSTTHHHH-H..........HHHHHH...TTTSEEEEEE-TT- CS
  Sigma54_activ_2  22 lpvfltGekGsgkelvArlLhknsgpwleifvverlaklp..........ldlleq...akggtLylkdiadl 81 
                        v+  G++G+gk+l A++++++ + +     ++ +  l+           +l+++   a + +L++ +++++
       KOO21299.1 656 KGVLFYGPPGCGKTLLAKAIANECQAN--FISIKGPELLTmwfgesesnvRELFDKargAAPCVLFFDELDSI 726
                      56999***************9875442..22222222222234444444577777733335567777777766 PP

>> SPARC_Ca_bdg  Secreted protein acidic and rich in cysteine Ca binding region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.6   0.0    0.0078       2.3      57     111 ..      32      88 ..      10      90 .. 0.85
   2 !    9.1   0.0    0.0052       1.5      50     112 ..      98     162 ..      91     163 .. 0.83

  Alignments for each domain:
  == domain 1  score: 8.6 bits;  conditional E-value: 0.0078
  SPARC_Ca_bdg  57 awkFsklDtnsdkvlsksELaplrapl..vklehCikpflescDadkdkkislkEwc 111
                   +  F+++D++  ++++ +EL++l a++   ++++  +++++ +Dad  ++i+ +E++
    KOO21299.1  32 REAFNSFDKDGGGSIDARELKDLMASVgqNPTDEELEEMIRIADADGTGDIDFAEFV 88 
                   5579*********************98334678999*******************97 PP

  == domain 2  score: 9.1 bits;  conditional E-value: 0.0052
  SPARC_Ca_bdg  50 keckepvawkFsklDtnsdkvlsksELaplrapl...vklehCikpflescDadkdkkislkEwce 112
                   ++ +e+++  Fs +Dt  d++++ +E++ +  ++   v+le  +++ +++ D + d+ i+  E+++
    KOO21299.1  98 EKSEETLRAAFSVFDTSGDGFINAEEMRRIMINVgepVTLED-VEQVIRKVDKNGDGAIDYDEFTK 162
                   5667788889*******************9987643345555.7899****************986 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.1   0.0     0.065        19       3      23 ..     385     405 ..     383     408 .. 0.86
   2 !   11.0   0.0   0.00099      0.29       3      26 ..     658     681 ..     656     733 .. 0.89

  Alignments for each domain:
  == domain 1  score: 5.1 bits;  conditional E-value: 0.065
                 EEEEC-TTTCHHHHHHHHHHH CS
       NACHT   3 vilqGeaGsGKTtLlqklala 23 
                 +++ G++GsGKT  ++ +a +
  KOO21299.1 385 ILMFGPPGSGKTLIARAVANE 405
                 6788***********999865 PP

  == domain 2  score: 11.0 bits;  conditional E-value: 0.00099
                 EEEEC-TTTCHHHHHHHHHHHHCT CS
       NACHT   3 vilqGeaGsGKTtLlqklalawae 26 
                 v+  G++G+GKT L++ +a + ++
  KOO21299.1 658 VLFYGPPGCGKTLLAKAIANECQA 681
                 6789**************998765 PP

>> NB-ARC  NB-ARC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.0   0.0     0.039        12      24      43 ..     386     405 ..     379     410 .. 0.88
   2 !   10.3   0.0     0.001      0.29      23      44 ..     658     679 ..     647     686 .. 0.85

  Alignments for each domain:
  == domain 1  score: 5.0 bits;  conditional E-value: 0.039
                 EEEESTTSSHHHHHHHHCCS CS
      NB-ARC  24 alvGmgGvGKttlakqilnk 43 
                  + G +G+GKt +a+ + n+
  KOO21299.1 386 LMFGPPGSGKTLIARAVANE 405
                 578*************9997 PP

  == domain 2  score: 10.3 bits;  conditional E-value: 0.001
                 EEEEESTTSSHHHHHHHHCCSH CS
      NB-ARC  23 valvGmgGvGKttlakqilnks 44 
                 v ++G +G+GKt lak i n+ 
  KOO21299.1 658 VLFYGPPGCGKTLLAKAIANEC 679
                 779***************9984 PP

>> AAA_24  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.2   0.0    0.0063       1.9       5      75 ..     385     451 ..     382     460 .. 0.62
   2 !    7.6   0.0    0.0098       2.9       5      22 ..     658     675 ..     655     689 .. 0.84

  Alignments for each domain:
  == domain 1  score: 8.2 bits;  conditional E-value: 0.0063
      AAA_24   5 iliyGpsgiGKTtlakel..gpkplfidtekGlksldadkfpdieswedfldevvelaaeladyktlviDtid 75 
                 il++Gp+g+GKT +a+    + + +f+ + +G   +    ++   s  +++++++e +++ +   +++iD id
  KOO21299.1 385 ILMFGPPGSGKTLIARAVanE-TGAFFFLINGPEIMSKLAGE---SESNLRKAFEEAEKNSP--AIIFIDEID 451
                 899************999742.33333333334344444433...55566666666555555..556666665 PP

  == domain 2  score: 7.6 bits;  conditional E-value: 0.0098
      AAA_24   5 iliyGpsgiGKTtlakel 22 
                 +l yGp+g GKT lak +
  KOO21299.1 658 VLFYGPPGCGKTLLAKAI 675
                 789************987 PP

>> UFD1  Ubiquitin fusion degradation protein UFD1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.6   0.0     7e-06    0.0021      51     160 ..     206     321 ..     174     331 .. 0.83

  Alignments for each domain:
  == domain 1  score: 17.6 bits;  conditional E-value: 7e-06
        UFD1  51 kkkkksthagVl.eFtaeegtvylPewmmenlgleegdlveiesv.slpkgkfvklqpqsedfldisdp..kavLekaLr.nfatLtkgdvieikyndk 144
                  k++k t + Vl + t e g++ + + + +nl+++ gd+v+++++ +++ gk v + p + ++  i+      +L+  +   +  + kgd + ++   +
  KOO21299.1 206 GKRRKDTVCIVLaDDTCEPGKIRMNKTIRKNLKVRLGDVVSVHQCpDVKYGKRVHILPIDDTIEGITGNlfDVFLKPYFMeAYRPVRKGDLFLVRGGMR 304
                 456678999887467899*************************8758999*************9998542256677665549***************** PP

        UFD1 145 vyelkvlevkpes.avs 160
                  +e+kv+e++pe+  + 
  KOO21299.1 305 AVEFKVVETDPEDyCIV 321
                 ***********994333 PP

>> EF-hand_4  Cytoskeletal-regulatory complex EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.4   0.1   0.00039      0.12       3      69 ..      22      91 ..      20     103 .. 0.67
   2 ?    3.5   0.1      0.23        68      41      68 ..     136     163 ..     108     179 .. 0.77

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 0.00039
   EF-hand_4  3 kleeleikkyweifsglkped.nkltgdkvapvlkns..kleedklekiwdladidedgkldfeefciam 69
                kl e +++++ e f++ +++    +   ++  ++ +   + ++++le++  +ad d  g++df ef+  m
  KOO21299.1 22 KLTEAQLDEFREAFNSFDKDGgGSIDARELKDLMASVgqNPTDEELEEMIRIADADGTGDIDFAEFVTLM 91
                555666666666666655443134444444444443211346899*********************9988 PP

  == domain 2  score: 3.5 bits;  conditional E-value: 0.23
   EF-hand_4  41 eedklekiwdladidedgkldfeefcia 68 
                 + + +e++    d + dg +d++ef+ a
  KOO21299.1 136 TLEDVEQVIRKVDKNGDGAIDYDEFTKA 163
                 456778888899999**********865 PP

>> AAA_3  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.2   0.0      0.03       8.9       2      45 ..     385     426 ..     384     496 .. 0.69
   2 !    8.3   0.0    0.0067         2       2      31 ..     658     687 ..     657     695 .. 0.88

  Alignments for each domain:
  == domain 1  score: 6.2 bits;  conditional E-value: 0.03
       AAA_3   2 vllegvPGlaktllvkalakaldlefkriqftpdllPsdilGte 45 
                 +l+ g PG +ktl+++a+a+  ++ f  i   p+++ s + G +
  KOO21299.1 385 ILMFGPPGSGKTLIARAVANETGAFFFLIN-GPEIM-SKLAGES 426
                 68999***************9998776664.56655.4455555 PP

  == domain 2  score: 8.3 bits;  conditional E-value: 0.0067
       AAA_3   2 vllegvPGlaktllvkalakaldlefkriq 31 
                 vl+ g PG +ktll+ka+a+  +++f  i+
  KOO21299.1 658 VLFYGPPGCGKTLLAKAIANECQANFISIK 687
                 788999*****************9998775 PP

>> PhoH  PhoH-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.2   0.1      0.01         3      23      40 ..     386     403 ..     374     408 .. 0.89
   2 !    7.6   0.0     0.008       2.4      22      42 ..     658     678 ..     651     684 .. 0.83

  Alignments for each domain:
  == domain 1  score: 7.2 bits;  conditional E-value: 0.01
                 EEE--TTSSTTHHHHHHH CS
        PhoH  23 faiGpaGtGKtylavala 40 
                  ++Gp G+GKt++a a+a
  KOO21299.1 386 LMFGPPGSGKTLIARAVA 403
                 689***********9998 PP

  == domain 2  score: 7.6 bits;  conditional E-value: 0.008
                 EEEE--TTSSTTHHHHHHHHH CS
        PhoH  22 vfaiGpaGtGKtylavalave 42 
                 v   Gp G+GKt+la a+a e
  KOO21299.1 658 VLFYGPPGCGKTLLAKAIANE 678
                 6789***********999865 PP

>> ResIII  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.3   0.0    0.0018      0.53      23      88 ..     381     440 ..     354     477 .. 0.71
   2 ?    4.5   0.0      0.11        31      21      50 ..     649     681 ..     627     687 .. 0.76

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.0018
                 TTSEEEEEESTTSTHHHHHHHHHHHH-S.....-EEEEESSHHHHHHHHHHGGGGTGG....GEEE CS
      ResIII  23 rdkrglikmaTGtGKTlvaaklierllkkgkeekflflvprkslleqtleefkkflseaykeigkk 88 
                   + +l+  + G+GKTl+a +++ +         f+fl+++ ++++++  e ++ l +a++e++k+
  KOO21299.1 381 PPRGILMFGPPGSGKTLIARAVANETG------AFFFLINGPEIMSKLAGESESNLRKAFEEAEKN 440
                 45566677899******9988777766......59**************88877777777653332 PP

  == domain 2  score: 4.5 bits;  conditional E-value: 0.11
                 .....TTSEEEEEESTTSTHHHHHHHHHHHH-S CS
      ResIII  21 s...krdkrglikmaTGtGKTlvaaklierllk 50 
                 +   +  k +l+  + G+GKTl+a +++ +++ 
  KOO21299.1 649 KfgmQPSKGVLFYGPPGCGKTLLAKAIANECQA 681
                 3444667788899***********999988876 PP

>> DUF2075  Uncharacterized conserved protein (DUF2075)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.3   0.0    0.0083       2.4       5      55 ..     386     430 ..     383     469 .. 0.64
   2 ?    5.9   0.0     0.021       6.2       4      25 ..     658     679 ..     655     704 .. 0.83

  Alignments for each domain:
  == domain 1  score: 7.3 bits;  conditional E-value: 0.0083
     DUF2075   5 lVtGvaGtGKtvvllnllaeleddeeertavylsvNhplvl.vlrealakke 55 
                 l  G +G+GKt+++ ++++e         a +++ N+p+++ +l  + +++ 
  KOO21299.1 386 LMFGPPGSGKTLIARAVANET-------GAFFFLINGPEIMsKLAGESESNL 430
                 55699***********99998.......555555555554324444444444 PP

  == domain 2  score: 5.9 bits;  conditional E-value: 0.021
     DUF2075   4 vlVtGvaGtGKtvvllnllael 25 
                 vl  G +G GKt+++ ++++e+
  KOO21299.1 658 VLFYGPPGCGKTLLAKAIANEC 679
                 56689****************9 PP

>> Cytidylate_kin2  Cytidylate kinase-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.5   0.0    0.0035         1       8     101 ..     391     488 ..     387     491 .. 0.68
   2 ?    3.8   0.0      0.18        54       8      54 ..     664     711 ..     661     751 .. 0.86

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 0.0035
  Cytidylate_kin2   8 yGsgGetigeaLAekLglpfy..dr.eiieevakelglseeev.eevdersrlssflskllaarvagdtldeklddelfeaqervirelaaees 97 
                       Gsg++ i++a+A++ g  f+  +  ei+ ++a e++ +  ++ ee++++s++  f++++ +   + ++++ + + +++    +++  l a   
       KOO21299.1 391 PGSGKTLIARAVANETGAFFFliNGpEIMSKLAGESESNLRKAfEEAEKNSPAIIFIDEIDSIAPKREKTQGEVERRIVSQLLTLMDGLKARAH 484
                      59***************87762244577777777777777776677777888788888877776666666666666666555555555554445 PP

  Cytidylate_kin2  98 vViv 101
                      vV++
       KOO21299.1 485 VVVI 488
                      5555 PP

  == domain 2  score: 3.8 bits;  conditional E-value: 0.18
  Cytidylate_kin2   8 yGsgGetigeaLAekLglpfydreiieevakelglseeev.eevders 54 
                       G+g++ +++a+A++ + +f++ + +e +   +g se+ v e +d+++
       KOO21299.1 664 PGCGKTLLAKAIANECQANFISIKGPELLTMWFGESESNVrELFDKAR 711
                      59********************99999999999999999977777733 PP

>> Rad17  Rad17 P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.6   0.0      0.19        57      46      73 ..     383     410 ..     373     482 .. 0.73
   2 !    9.5   0.0    0.0029      0.84      44      82 ..     654     692 ..     644     732 .. 0.72

  Alignments for each domain:
  == domain 1  score: 3.6 bits;  conditional E-value: 0.19
       Rad17  46 riLLisGPsGCgkstvvkvLskelgikl 73 
                 r +L+ GP+G gk+ + + ++ e g  +
  KOO21299.1 383 RGILMFGPPGSGKTLIARAVANETGAFF 410
                 557899**********999999988644 PP

  == domain 2  score: 9.5 bits;  conditional E-value: 0.0029
       Rad17  44 kkriLLisGPsGCgkstvvkvLskelgiklrewlnpvsl 82 
                 + + +L  GP+GCgk+   k ++ e   +++    p +l
  KOO21299.1 654 PSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELL 692
                 55667999**************99998888877766665 PP

>> DUF815  Protein of unknown function (DUF815)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.3   0.0      0.27        78      52      78 ..     381     407 ..     355     493 .. 0.84
   2 !   10.2   0.0     0.001       0.3      30      81 ..     626     683 ..     603     706 .. 0.70

  Alignments for each domain:
  == domain 1  score: 2.3 bits;  conditional E-value: 0.27
      DUF815  52 pannvLLwGarGtGKSslvkallneya 78 
                 p + +L++G  G+GK  + +a+ ne+ 
  KOO21299.1 381 PPRGILMFGPPGSGKTLIARAVANETG 407
                 56679****************999875 PP

  == domain 2  score: 10.2 bits;  conditional E-value: 0.001
      DUF815  30 Lvgidkqkealventeqfleg......lpannvLLwGarGtGKSslvkallneyaeeg 81 
                 L g++++ +++v+   +f e+      +p++ vL++G  G+GK  l ka+ ne++++ 
  KOO21299.1 626 LEGVKRELQEVVQYPVEFPEKfekfgmQPSKGVLFYGPPGCGKTLLAKAIANECQANF 683
                 4444444444444444443321112227999**********************99875 PP

>> AAA_19  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.9   0.1       1.8   5.2e+02      91     126 ..     155     191 ..      54     201 .. 0.68
   2 ?    5.2   0.1     0.087        25      12      31 ..     384     403 ..     377     409 .. 0.81
   3 ?    5.6   0.0     0.062        18      10      36 ..     655     681 ..     650     713 .. 0.86

  Alignments for each domain:
  == domain 1  score: 0.9 bits;  conditional E-value: 1.8
      AAA_19  91 leeaeeekkl.qeeellivDEfqdvdelqyrLlkall 126
                 +++ e +k   ++ + l+vDE+++ d   ++L  a +
  KOO21299.1 155 IDYDEFTKAKkKNPNRLLVDEASNDDNSVVALSLATM 191
                 33333333330344599*****999887777755555 PP

  == domain 2  score: 5.2 bits;  conditional E-value: 0.087
      AAA_19  12 vllvtaGpGtGKTrvlkhiv 31 
                  +l+ ++pG+GKT + +++ 
  KOO21299.1 384 GILMFGPPGSGKTLIARAVA 403
                 57899********9987765 PP

  == domain 3  score: 5.6 bits;  conditional E-value: 0.062
      AAA_19  10 ekvllvtaGpGtGKTrvlkhivallve 36 
                 +k +l  ++pG+GKT + k+i +++++
  KOO21299.1 655 SKGVLFYGPPGCGKTLLAKAIANECQA 681
                 6678899********999998887765 PP

>> NTPase_1  NTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.0       7.4   2.2e+03      37      87 ..      98     146 ..      95     158 .. 0.77
   2 ?    2.0   0.0      0.58   1.7e+02       3      21 ..     386     404 ..     384     408 .. 0.83
   3 ?    1.0   0.1       1.2   3.6e+02      85     121 ..     430     467 ..     421     489 .. 0.71
   4 ?    6.6   0.0     0.022       6.5       6      32 ..     662     688 ..     658     692 .. 0.89

  Alignments for each domain:
  == domain 1  score: -1.6 bits;  conditional E-value: 7.4
                 EE-------EEEEEET.T--EEEEEETT---SSEETTEEE-HHHHHHHHHH CS
    NTPase_1  37 evreggrrigFkivdlasgeegiLarveakreprvgkyvvdvesfeelale 87 
                 e  e+  r +F++ d  sg+  i a++  +  ++vg+ v   e++e+++ +
  KOO21299.1  98 EKSEETLRAAFSVFDT-SGDGFINAEEMRRIMINVGEPVTL-EDVEQVIRK 146
                 5567788999999999.999999999888888999998655.888887544 PP

  == domain 2  score: 2.0 bits;  conditional E-value: 0.58
                 EEE--TTSSHHHHHHHHHH CS
    NTPase_1   3 fiTGppGvGKtTlvkkvle 21 
                 ++ GppG+GKt + + v++
  KOO21299.1 386 LMFGPPGSGKTLIARAVAN 404
                 567********99988877 PP

  == domain 3  score: 1.0 bits;  conditional E-value: 1.2
                 HHHHHHHHH.HHH-EEEE---STTGGG-HHHHHHHHHH CS
    NTPase_1  85 alealrkal.seadviviDEiGkmElkskkfkeaveev 121
                   +a+++a  +++ +i iDEi ++  k +k + +ve+ 
  KOO21299.1 430 LRKAFEEAEkNSPAIIFIDEIDSIAPKREKTQGEVERR 467
                 34445555434455*******88877777777777665 PP

  == domain 4  score: 6.6 bits;  conditional E-value: 0.022
                 --TTSSHHHHHHHHHHHH...GGGEEE CS
    NTPase_1   6 GppGvGKtTlvkkvlellkssgvkvgG 32 
                 GppG GKt l k ++++++ + ++++G
  KOO21299.1 662 GPPGCGKTLLAKAIANECQANFISIKG 688
                 9*****************998888887 PP

>> UPF0154  Uncharacterised protein family (UPF0154)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.1   0.0    0.0091       2.7      30      56 ..      46      72 ..      44      75 .. 0.91
   2 ?    3.9   0.0      0.19        56      30      59 ..     119     148 ..     117     149 .. 0.94

  Alignments for each domain:
  == domain 1  score: 8.1 bits;  conditional E-value: 0.0091
     UPF0154 30 inekmirammkqmGrkPSekqikqvmr 56
                i++  ++ +m+++G++P+   +++++r
  KOO21299.1 46 IDARELKDLMASVGQNPTDEELEEMIR 72
                78899*****************99986 PP

  == domain 2  score: 3.9 bits;  conditional E-value: 0.19
     UPF0154  30 inekmirammkqmGrkPSekqikqvmrsmk 59 
                 in++ +r +m  +G   +  +++qv+r++ 
  KOO21299.1 119 INAEEMRRIMINVGEPVTLEDVEQVIRKVD 148
                 9*************************9986 PP

>> TerB  Tellurite resistance protein TerB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.7   1.1    0.0056       1.6      43     108 ..      45     108 ..      17     127 .. 0.55
   2 ?    5.6   0.0      0.05        15      41      94 ..     116     167 ..     113     174 .. 0.79

  Alignments for each domain:
  == domain 1  score: 8.7 bits;  conditional E-value: 0.0056
        TerB  43 qvsesErqafrellksrfglspeeakallelfeeaeeeavdleqftralkrklspeqrraliealw 108
                  ++++E + +++ + ++    +ee+++ ++ +++  +  +d+ +f+  ++ k+++e+ ++ ++a +
  KOO21299.1  45 SIDARELKDLMASVGQNPT--DEELEEMIRIADADGTGDIDFAEFVTLMAHKMADEKSEETLRAAF 108
                 3444444444444433322..555555555555555555555555555555555555555555555 PP

  == domain 2  score: 5.6 bits;  conditional E-value: 0.05
        TerB  41 DgqvsesErqafrellksrfglspeeakallelfeeaeeeavdleqftralkrk 94 
                 Dg ++++E+++++  +     ++ e++++++++ ++  + a+d+++ft+a k++
  KOO21299.1 116 DGFINAEEMRRIMINV--GEPVTLEDVEQVIRKVDKNGDGAIDYDEFTKAKKKN 167
                 6667777777776666..44455789**********************997775 PP

>> SKI  Shikimate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.0   0.0     0.083        25       1      21 [.     391     411 ..     391     437 .. 0.90
   2 ?    6.1   0.0     0.038        11       1      21 [.     664     684 ..     664     688 .. 0.93

  Alignments for each domain:
  == domain 1  score: 5.0 bits;  conditional E-value: 0.083
                 TTSSHHHHHHHHHHHHTSEEE CS
         SKI   1 mGaGKstvGkllAkklglefi 21 
                 +G+GK+ +++++A++ g  f+
  KOO21299.1 391 PGSGKTLIARAVANETGAFFF 411
                 69*************998775 PP

  == domain 2  score: 6.1 bits;  conditional E-value: 0.038
                 TTSSHHHHHHHHHHHHTSEEE CS
         SKI   1 mGaGKstvGkllAkklglefi 21 
                 +G+GK+ ++k++A++ + +fi
  KOO21299.1 664 PGCGKTLLAKAIANECQANFI 684
                 6****************9998 PP

>> AAA_11  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.1   0.0      0.12        34      20      40 ..     385     405 ..     372     444 .. 0.81
   2 ?    5.8   0.0     0.035        10      19      41 ..     657     679 ..     647     718 .. 0.75

  Alignments for each domain:
  == domain 1  score: 4.1 bits;  conditional E-value: 0.12
      AAA_11  20 tliqGPPGtgKTktivellsq 40 
                  l+ GPPG+gKT    ++ ++
  KOO21299.1 385 ILMFGPPGSGKTLIARAVANE 405
                 4889********877776665 PP

  == domain 2  score: 5.8 bits;  conditional E-value: 0.035
      AAA_11  19 itliqGPPGtgKTktivellsql 41 
                  +l+ GPPG+gKT    ++ ++ 
  KOO21299.1 657 GVLFYGPPGCGKTLLAKAIANEC 679
                 47999********7766666665 PP

>> Cytidylate_kin  Cytidylate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.7   0.0     0.037        11       5      26 ..     389     410 ..     385     415 .. 0.87
   2 ?    4.4   0.0     0.093        27       5      28 ..     662     685 ..     658     687 .. 0.93

  Alignments for each domain:
  == domain 1  score: 5.7 bits;  conditional E-value: 0.037
                     -STTSSHHHHHHHHHHHHT-EE CS
  Cytidylate_kin   5 GPagsGKssvaralaeklglky 26 
                     GP gsGK  +ara+a++ g+ +
      KOO21299.1 389 GPPGSGKTLIARAVANETGAFF 410
                     9***************998765 PP

  == domain 2  score: 4.4 bits;  conditional E-value: 0.093
                     -STTSSHHHHHHHHHHHHT-EEEE CS
  Cytidylate_kin   5 GPagsGKssvaralaeklglkyld 28 
                     GP g GK  +a+a+a++ ++++++
      KOO21299.1 662 GPPGCGKTLLAKAIANECQANFIS 685
                     9******************99985 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.0       5.4   1.6e+03      85     106 ..     164     185 ..     124     206 .. 0.71
   2 ?    4.6   0.0      0.08        23      22      40 ..     386     404 ..     372     408 .. 0.83
   3 ?    4.3   0.0       0.1        29      21      43 ..     658     680 ..     646     688 .. 0.80

  Alignments for each domain:
  == domain 1  score: -1.4 bits;  conditional E-value: 5.4
      AAA_30  85 rlepgtllivDEagmvdtkqla 106
                 + ++ + l+vDEa+  d++ +a
  KOO21299.1 164 KKKNPNRLLVDEASNDDNSVVA 185
                 3344488999**9987776655 PP

  == domain 2  score: 4.6 bits;  conditional E-value: 0.08
      AAA_30  22 vltGpAGtGKttalkalre 40 
                 ++ Gp+G+GKt + +a+++
  KOO21299.1 386 LMFGPPGSGKTLIARAVAN 404
                 677**********999865 PP

  == domain 3  score: 4.3 bits;  conditional E-value: 0.1
      AAA_30  21 avltGpAGtGKttalkalreawe 43 
                 ++  Gp+G GKt + ka+++  +
  KOO21299.1 658 VLFYGPPGCGKTLLAKAIANECQ 680
                 6778*************987665 PP

>> KAP_NTPase  KAP family P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.9   0.0    0.0027       0.8     150     191 ..     419     459 ..     392     471 .. 0.75
   2 ?    0.1   0.0       1.3   3.8e+02      23      47 ..     658     682 ..     650     764 .. 0.85

  Alignments for each domain:
  == domain 1  score: 8.9 bits;  conditional E-value: 0.0027
  KAP_NTPase 150 lkklqteveelladmektLdalqkrlVvviDdLDrceteevl 191
                 + kl  e e++l +++++ + ++++ +++iD++D++ +++ +
  KOO21299.1 419 MSKLAGESESNLRKAFEEAE-KNSPAIIFIDEIDSIAPKREK 459
                 55555555544444444444.59*************999865 PP

  == domain 2  score: 0.1 bits;  conditional E-value: 1.3
  KAP_NTPase  23 vgLygkWGsGKssllnkledelkef 47 
                 v  yg+ G+GK+ l + + +e + +
  KOO21299.1 658 VLFYGPPGCGKTLLAKAIANECQAN 682
                 67799999****9999999887765 PP

>> PduV-EutP  Ethanolamine utilisation - propanediol utilisation
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.2   0.0      0.47   1.4e+02       4      24 ..     385     405 ..     383     409 .. 0.89
   2 ?    7.2   0.0     0.014         4       2      24 ..     656     678 ..     655     682 .. 0.90

  Alignments for each domain:
  == domain 1  score: 2.2 bits;  conditional E-value: 0.47
   PduV-EutP   4 illiGkvgsGKttLtqalkge 24 
                 il++G+ gsGKt +++a+ +e
  KOO21299.1 385 ILMFGPPGSGKTLIARAVANE 405
                 899***********9999887 PP

  == domain 2  score: 7.2 bits;  conditional E-value: 0.014
   PduV-EutP   2 kkilliGkvgsGKttLtqalkge 24 
                 k +l+ G+ g+GKt L++a+ +e
  KOO21299.1 656 KGVLFYGPPGCGKTLLAKAIANE 678
                 679****************9986 PP

>> Zot  Zonular occludens toxin (Zot)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.8   0.0    0.0077       2.3       5      62 ..     387     454 ..     385     502 .. 0.80
   2 ?   -0.1   0.0         2     6e+02       4      17 ..     659     672 ..     658     722 .. 0.86

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 0.0077
         Zot   5 vtGapGsgKts..gavkkdllp..alkegRkiitnidGlrlerieqvlgekvs.tarlirid.....n 62 
                   G+pGsgKt+  +av ++     +l +g +i+ ++ G    ++++ ++e+ + ++ +i+id      
  KOO21299.1 387 MFGPPGSGKTLiaRAVANETGAffFLINGPEIMSKLAGESESNLRKAFEEAEKnSPAIIFIDeidsiA 454
                 67999****97224566665556677799999999999999999999999988899999999543332 PP

  == domain 2  score: -0.1 bits;  conditional E-value: 2
         Zot   4 lvtGapGsgKtsga 17 
                 l++G+pG gKt+ a
  KOO21299.1 659 LFYGPPGCGKTLLA 672
                 799********865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (956 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       622  (0.0346924); expected 358.6 (0.02)
Passed bias filter:                      553  (0.0308439); expected 358.6 (0.02)
Passed Vit filter:                       102  (0.00568911); expected 17.9 (0.001)
Passed Fwd filter:                        61  (0.00340231); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              61  [number of targets reported over threshold]
# CPU time: 0.89u 0.30s 00:00:01.19 Elapsed: 00:00:00.45
# Mc/sec: 6318.72
//
Query:       KOO21300.1  [L=1417]
Description: wd repeat-containing protein 19 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.9e-16   59.2   0.0    6.5e-16   58.1   0.0    1.7  1  WD40_3         WD domain, G-beta repeat
    3.2e-07   30.6   0.7        2.2    8.6   0.0    4.8  4  ANAPC4_WD40    Anaphase-promoting complex subunit 4 WD40 doma
    0.00017   20.8   1.8      0.011   14.8   0.1    3.0  3  Coatomer_WDAD  Coatomer WD associated region
    0.00073   19.4   0.8         12    5.8   0.0    3.9  4  Clathrin       Region in Clathrin and VPS
     0.0017   16.4   0.0     0.0073   14.4   0.0    1.8  2  IKI3           IKI3 family
  ------ inclusion threshold ------
      0.014   16.3   0.1        2.8    9.0   0.0    4.1  3  WD40           WD domain, G-beta repeat
      0.019   14.8   0.0       0.22   11.4   0.0    2.4  2  eIF2A          Eukaryotic translation initiation factor eIF2A
      0.042   13.9   8.8    1.7e+02    2.6   0.0    6.8  6  TPR_7          Tetratricopeptide repeat
      0.051   13.5   3.6          5    7.1   0.0    4.6  4  TPR_10         Tetratricopeptide repeat
       0.53   10.4   8.7         16    5.7   0.1    4.5  4  MIT            MIT (microtubule interacting and transport) do
        1.1    7.7   4.3        6.4    5.1   0.1    3.2  4  Nic96          Nup93/Nic96
        2.2    9.3  18.9         61    4.8   0.1    7.0  7  TPR_14         Tetratricopeptide repeat
        4.8    7.0   8.6         28    4.5   0.1    4.8  5  TPR_11         TPR repeat


Domain annotation for each model (and alignments):
>> WD40_3  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.1   0.0   4.7e-19   6.5e-16       1      57 []     558     616 ..     558     616 .. 0.97

  Alignments for each domain:
  == domain 1  score: 58.1 bits;  conditional E-value: 4.7e-19
      WD40_3   1 VneYrHsvgIkklfpnpsGtrlvfiDekgdgfvynPvseelleipdfpst..vkgvLWD 57 
                 V+e+rH+ ++++ fpn+sGtr++f+D+ g g++++P++e++l+ip++p     +++LWD
  KOO21300.1 558 VSEFRHDSPVTACFPNASGTRVAFVDAAGLGHLLSPIDESVLPIPQLPMAnaGHKILWD 616
                 89**********************************************9877889***9 PP

>> ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.2   0.0    0.0094        13      23      70 ..      46      93 ..      41     114 .. 0.78
   2 ?    2.6   0.1      0.12   1.7e+02      41      68 ..     106     134 ..      98     146 .. 0.82
   3 !    7.9   0.1    0.0027       3.8      36      90 ..     148     201 ..     129     203 .. 0.79
   4 !    8.6   0.0    0.0016       2.2      36      62 ..     368     394 ..     361     400 .. 0.88

  Alignments for each domain:
  == domain 1  score: 6.2 bits;  conditional E-value: 0.0094
  ANAPC4_WD40 23 RlngqrvwtleedkedsevrsLaWkpdgklLavaysdgevrlldaesg 70
                 R+  +r+++le++++++     aW+p+g +La   ++  v++++ + g
   KOO21300.1 46 RFAAKRLFSLEAQTHGKGQVICAWHPQGIFLATCGANKIVNVFNRQGG 93
                 77889999997777777777789***********99999999887655 PP

  == domain 2  score: 2.6 bits;  conditional E-value: 0.12
  ANAPC4_WD40  41 vrsLaWkpdgklLavaysdg.evrlldae 68 
                    +L+W  +g+ La+  +++  +rl da+
   KOO21300.1 106 CLQLEWDVEGEKLAILQQNSaIIRLWDAN 134
                  5689************9998567888876 PP

  == domain 3  score: 7.9 bits;  conditional E-value: 0.0027
  ANAPC4_WD40  36 kedsevrsLaWkpdgklLavaysdgevrlldaesgkvvhslsvksekavtclgWg 90 
                  ++++  + ++W  +  lLa++ ++g++ l+d  + k  + l  +++ ++t+  W+
   KOO21300.1 148 DKGEVLTFIKWAANAPLLAIGNQKGTLCLYDKRTLKKQSLLGKHTK-RITSGAWN 201
                  456666789**********************999888777776666.58887776 PP

  == domain 4  score: 8.6 bits;  conditional E-value: 0.0016
  ANAPC4_WD40  36 kedsevrsLaWkpdgklLavaysdgev 62 
                  +++++ ++L+W  dg++L va s g v
   KOO21300.1 368 TDGGQLQHLQWTRDGQILTVASSTGCV 394
                  5788999***************99976 PP

>> Coatomer_WDAD  Coatomer WD associated region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.0      0.57   7.9e+02      69     161 ..     104     209 ..      68     222 .. 0.53
   2 !   14.8   0.1     8e-06     0.011     330     388 ..     711     769 ..     707     788 .. 0.91
   3 ?    3.6   0.2     0.021        28     345     428 ..     956     997 ..     896    1058 .. 0.52

  Alignments for each domain:
  == domain 1  score: -1.2 bits;  conditional E-value: 0.57
                    XXXXXXXXXX.XXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXXXXX..XXX.......XXXXXXXXXX..XXXXXXXXXXXXXXX..XXXXXXXXX CS
  Coatomer_WDAD  69 gkgldfvwvs.snrfavlessksvkifknfkekktksikleyqvdk..ifg.......GalLgvkseg.svsfYDweqgklvrri..dvkkvknVv 151
                    g++l+  w    ++ a+l++++ +  + + + ++++s++++ ++dk  +           lL + +++ ++++YD  + k  + +  + k ++   
     KOO21300.1 104 GQCLQLEWDVeGEKLAILQQNSAIIRLWDANMNTESSVDTNARIDKgeVLTfikwaanAPLLAIGNQKgTLCLYDKRTLKKQSLLgkHTKRITSGA 199
                    666666665534446666664444333444444445666666555422222455666666665554443566666444332222200233355555 PP

                    XXXXXXXXXX CS
  Coatomer_WDAD 152 wsddgelval 161
                    w++  el+  
     KOO21300.1 200 WNERDELILA 209
                    5555555544 PP

  == domain 2  score: 14.8 bits;  conditional E-value: 8e-06
                    HHHTT-HHHHHHHHHHH--HHHHHHHHHHHHHTT-HHHHHHHHHHTT-HHHHHHHHHHH CS
  Coatomer_WDAD 330 AlelgnLelAlelakelddeekWkkLgdaAlsqgniklaeeayqkakdfdkLllLylst 388
                    ++ lg+L+ A +la +l++ + + +Lg aA++  ++ +a  +y + +d    + L  + 
     KOO21300.1 711 SVALGRLSRAWDLAMTLKEAALFVQLGHAAMTLIDLPMATRCYRHLGDAGMVMALQKLE 769
                    789********************************************998887776655 PP

  == domain 3  score: 3.6 bits;  conditional E-value: 0.021
                    HH--HHHHHHHHHHHHHTT-HHHHHHHHHHTT-HHHHHHHHHHHT-HHHHHHHHHHHHHTT-HHHHHHHHHHHT-HHHHHHHHH CS
  Coatomer_WDAD 345 elddeekWkkLgdaAlsqgniklaeeayqkakdfdkLllLylstgnkekLkkLakiaekkgdyniafqaalllgdvekcvdlLi 428
                    +  +++  ++ ++a  ++g+++ a  ay++a+d+d+                                           v lL+
     KOO21300.1 956 KIASPKLHSEFAKAKEAEGSMQEAVTAYERANDLDSV------------------------------------------VRLLL 997
                    3334444455555555666666666666666666653..........................................33332 PP

>> Clathrin  Region in Clathrin and VPS
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.0       5.1   7.1e+03      99     135 ..     814     853 ..     807     854 .. 0.70
   2 ?    5.5   0.2     0.011        15      88     124 ..     910     946 ..     903     970 .. 0.69
   3 !    5.8   0.0    0.0084        12      81     136 ..     971    1028 ..     963    1034 .. 0.86
   4 ?    3.7   0.0     0.037        51      98     136 ..    1100    1140 ..    1091    1144 .. 0.80

  Alignments for each domain:
  == domain 1  score: -3.2 bits;  conditional E-value: 5.1
                 HSSHSSXSSSSHCSCHHH...HTTTTTXXSHHHHHHHHHH CS
    Clathrin  99 fkkaisllkklkdfddai...eyaakvsnpelweklleal 135
                 +++a++l+k+l   +  +   e+a++++  e +e++l+++
  KOO21300.1 814 WEQALKLAKTLAPDQVPMiarEFAKQLEFREQYEQALNMY 853
                 6777776666433333336679999999999999998886 PP

  == domain 2  score: 5.5 bits;  conditional E-value: 0.011
                 HHHHHHHTTXTHSSHSSXSSSSHCSCHHHHTTTTTXX CS
    Clathrin  88 eavilykkinefkkaisllkklkdfddaieyaakvsn 124
                 e  +l+ +++++++a+ l+++ +++d+a+ +++k +n
  KOO21300.1 910 ECAVLLEALKQWNDAARLYETGEQLDKAAAIYIKTKN 946
                 5566777777777777777777777777766666655 PP

  == domain 3  score: 5.8 bits;  conditional E-value: 0.0084
                  HT-SSHHHHHHHHHTTXTHSSHSS.X.SSSSHCSCHHHHTTTTTXXSHHHHHHHHHHH CS
    Clathrin   81 ekadlyeeavilykkinefkkais.l.lkklkdfddaieyaakvsnpelweklleall 136 
                  e ++ ++eav  y + n+ + ++  l l  l+++d+a+ ++++ ++p+ +  +++++ 
  KOO21300.1  971 EAEGSMQEAVTAYERANDLDSVVRlLlLPALEQPDRAMAIVRETKSPQGALLVAQHCQ 1028
                  567789******************85689999***************99999988885 PP

  == domain 4  score: 3.7 bits;  conditional E-value: 0.037
                  THSSHSS..X.SSSSHCSCHHHHTTTTTXXSHHHHHHHHHHH CS
    Clathrin   98 efkkais..l.lkklkdfddaieyaakvsnpelweklleall 136 
                  e++ka+   l +  + + d+aie+++++++  l ++l+++l+
  KOO21300.1 1100 EYAKALRlfLqC-SERAVDQAIEVVGRARSDMLTHQLIDFLM 1140
                  666666654433.34789**********************98 PP

>> IKI3  IKI3 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.4   0.0   5.3e-06    0.0073     260     373 ..      66     174 ..      51     185 .. 0.81
   2 ?   -1.2   0.0      0.27   3.7e+02     301     323 ..     367     389 ..     361     429 .. 0.77

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 5.3e-06
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXXXXXXXXXXX..XXXXXXX.XXXXXXXXXXXXXXX...XXXX CS
        IKI3 260 aLaWrPsGsliAstqrkkdksldvvfFErNGLrhgefslrlekeeeevqsLaWsadSevLavrledr..vqlwtis.NyhWYLKqelrysasegveevk 355
                   aW P+G  +A+   +    + v  F r G  h e+ l+      ++ +L+W  ++e La+  +++  ++lw  + N    +  + r+ + e ++ +k
  KOO21300.1  66 ICAWHPQGIFLATCGAN----KIVNVFNRQGGPHAEIPLE---GAGQCLQLEWDVEGEKLAILQQNSaiIRLWDANmNTESSVDTNARIDKGEVLTFIK 157
                 458*********99873....35689************96...578899*************7777668****86437778888888888888888899 PP

                 XXXXXXXXXXXXXX.XXX CS
        IKI3 356 WdpekpltLlvltesgki 373
                 W +++pl L +++++g++
  KOO21300.1 158 WAANAPL-LAIGNQKGTL 174
                 9998888.8888877665 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 0.27
                 .XXXXXXXXXXXXXXXXXXXXXX CS
        IKI3 301 ekeeeevqsLaWsadSevLavrl 323
                 +++  + q+L+W  d+++L+v+ 
  KOO21300.1 367 KTDGGQLQHLQWTRDGQILTVAS 389
                 46677889999999999999954 PP

>> WD40  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.0   0.0     0.002       2.8      10      38 .]      60      89 ..      50      89 .. 0.77
   2 ?    2.0   0.0      0.33   4.5e+02      13      38 .]     152     178 ..     143     178 .. 0.88
   3 ?   -2.7   0.0       9.7   1.3e+04      14      29 ..     374     389 ..     367     394 .. 0.73

  Alignments for each domain:
  == domain 1  score: 9.0 bits;  conditional E-value: 0.002
                S.SS.EEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40 10 H.ss.vtslafspdgawlasGsdDgtvriWd 38
                H ++ v  +a++p g +la+++ ++ v +++
  KOO21300.1 60 HgKGqV-ICAWHPQGIFLATCGANKIVNVFN 89
                543455.345***********99***99986 PP

  == domain 2  score: 2.0 bits;  conditional E-value: 0.33
                 E.EEEEEETTSSEEEEEETTSEEEEEE CS
        WD40  13 v.tslafspdgawlasGsdDgtvriWd 38 
                 v t +++  + ++la G  +gt+ ++d
  KOO21300.1 152 VlTFIKWAANAPLLAIGNQKGTLCLYD 178
                 44778999*****************98 PP

  == domain 3  score: -2.7 bits;  conditional E-value: 9.7
                 EEEEEETTSSEEEEEE CS
        WD40  14 tslafspdgawlasGs 29 
                  +l++ +dg+ l+ +s
  KOO21300.1 374 QHLQWTRDGQILTVAS 389
                 5788999999986443 PP

>> eIF2A  Eukaryotic translation initiation factor eIF2A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.8   0.0      0.28   3.9e+02     144     164 ..      62      82 ..      42      90 .. 0.79
   2 ?   11.4   0.0   0.00016      0.22      45     160 ..      89     209 ..      77     213 .. 0.77

  Alignments for each domain:
  == domain 1  score: 0.8 bits;  conditional E-value: 0.28
                 TT--EEEE-TTSSEEEEEE-T CS
       eIF2A 144 anatlvewspdgryvlTatta 164
                 +  + + w+p+g +++T+   
  KOO21300.1  62 KGQVICAWHPQGIFLATCGAN 82 
                 55689************9765 PP

  == domain 2  score: 11.4 bits;  conditional E-value: 0.00016
                 SSTT--EEECCEESSS.EEEEEE-TTSS-EEEEESSSSCEEEEEECSCEEEEEEEEES-.......-EEEE-TTSSEEEEE-TTSSS-EEEEEETT..T CS
       eIF2A  45 klkkkksevvelkkegpihdvaWspkskefaviyGkmpakvslfdlkvkviskleeqkr.......NtiffspkgklvllaGfgnlaGeleiwdvk..k 134
                 + ++++   ++l+ +g+  +++W+ +++++a+++ +  a + l+d +++  s++++++r         i++ ++  l+++   gn +G+l ++d+   k
  KOO21300.1  89 NRQGGPHAEIPLEGAGQCLQLEWDVEGEKLAILQ-QNSAIIRLWDANMNTESSVDTNARidkgevlTFIKWAANAPLLAI---GNQKGTLCLYDKRtlK 183
                 668889999***********************98.56789******9666666665554222222256888888888776...789999*****99555 PP

                 TEEEEEEE-TT--EEEE-TTSSEEEE CS
       eIF2A 135 kkkiakaeaanatlvewspdgryvlT 160
                 k+++   + +  t+  w+  ++++l 
  KOO21300.1 184 KQSLLGKHTKRITSGAWNERDELILA 209
                 66666677778888899999988875 PP

>> TPR_7  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.1   0.1      0.38   5.3e+02      14      28 ..     845     857 ..     841     861 .. 0.82
   2 ?    2.6   0.2      0.12   1.7e+02       4      24 ..     910     930 ..     907     944 .. 0.80
   3 ?    1.3   0.0      0.32   4.5e+02      12      28 ..     973     987 ..     967    1003 .. 0.81
   4 ?    2.6   0.0      0.12   1.7e+02       6      22 ..    1024    1040 ..    1021    1048 .. 0.87
   5 ?    2.5   0.1      0.13   1.8e+02       6      27 ..    1092    1113 ..    1089    1121 .. 0.79
   6 ?    1.1   0.0      0.38   5.3e+02       7      20 ..    1155    1168 ..    1152    1169 .. 0.91

  Alignments for each domain:
  == domain 1  score: 1.1 bits;  conditional E-value: 0.38
       TPR_7  14 dyeeAielyeqsLal 28 
                 +ye+A+  y++  +l
  KOO21300.1 845 QYEQALNMYQR--GL 857
                 79********9..76 PP

  == domain 2  score: 2.6 bits;  conditional E-value: 0.12
       TPR_7   4 nLarlysrlGdyeeAielyeq 24 
                   a+l ++l ++ +A++lye 
  KOO21300.1 910 ECAVLLEALKQWNDAARLYET 930
                 5689999999*********97 PP

  == domain 3  score: 1.3 bits;  conditional E-value: 0.32
       TPR_7  12 lGdyeeAielyeqsLal 28 
                 +G ++eA++ ye+  a 
  KOO21300.1 973 EGSMQEAVTAYER--AN 987
                 56689*******9..54 PP

  == domain 4  score: 2.6 bits;  conditional E-value: 0.12
       TPR_7    6 arlysrlGdyeeAiely 22  
                  a+ ++++Gd++ Aie++
  KOO21300.1 1024 AQHCQARGDFRGAIEFL 1040
                  677999*********97 PP

  == domain 5  score: 2.5 bits;  conditional E-value: 0.13
       TPR_7    6 arlysrlGdyeeAielyeqsLa 27  
                  ++ ++++ +y++A++l+ q+ +
  KOO21300.1 1092 GEFWFACKEYAKALRLFLQCSE 1113
                  67899999**********9544 PP

  == domain 6  score: 1.1 bits;  conditional E-value: 0.38
       TPR_7    7 rlysrlGdyeeAie 20  
                  rly +lG+y +A++
  KOO21300.1 1155 RLYMALGNYPQAAK 1168
                  79**********86 PP

>> TPR_10  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.1   0.0    0.0036         5      22      39 ..     843     860 ..     840     863 .. 0.86
   2 ?   -1.0   0.1       1.3   1.8e+03       9      26 ..     912     929 ..     912     930 .. 0.86
   3 ?    3.0   0.1     0.072     1e+02      17      35 ..     968     986 ..     962     991 .. 0.83
   4 ?   -2.1   0.0       2.9   3.9e+03      13      28 ..    1096    1111 ..    1092    1114 .. 0.82

  Alignments for each domain:
  == domain 1  score: 7.1 bits;  conditional E-value: 0.0036
      TPR_10  22 ealleealairrrllGpd 39 
                 ++ +e+al++++r lG+ 
  KOO21300.1 843 REQYEQALNMYQRGLGDA 860
                 7789***********986 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 1.3
      TPR_10   9 analrqrgrydeAealle 26 
                 a++l +++++++A +l+e
  KOO21300.1 912 AVLLEALKQWNDAARLYE 929
                 56778999********99 PP

  == domain 3  score: 3.0 bits;  conditional E-value: 0.072
      TPR_10  17 rydeAealleealairrrl 35 
                 + +eAe  ++ea+ +++r+
  KOO21300.1 968 KAKEAEGSMQEAVTAYERA 986
                 5689*************98 PP

  == domain 4  score: -2.1 bits;  conditional E-value: 2.9
      TPR_10   13 rqrgrydeAealleea 28  
                  ++ ++y++A++l+ ++
  KOO21300.1 1096 FACKEYAKALRLFLQC 1111
                  67899*******9987 PP

>> MIT  MIT (microtubule interacting and transport) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.7   0.1     0.012        16      11      31 ..     837     857 ..     835     859 .. 0.88
   2 ?    1.0   0.3      0.34   4.6e+02      11      30 ..     912     931 ..     910     939 .. 0.89
   3 ?    1.4   0.2      0.25   3.5e+02      11      32 ..     967     988 ..     965     994 .. 0.88
   4 ?    3.6   0.0      0.05        69      16      44 ..    1090    1118 ..    1086    1133 .. 0.78

  Alignments for each domain:
  == domain 1  score: 5.7 bits;  conditional E-value: 0.012
         MIT  11 AveeDnagnyeeAlelYkeal 31 
                 A +++ +++ye Al++Y+ +l
  KOO21300.1 837 AKQLEFREQYEQALNMYQRGL 857
                 66788899***********98 PP

  == domain 2  score: 1.0 bits;  conditional E-value: 0.34
         MIT  11 AveeDnagnyeeAlelYkea 30 
                 Av ++  +++ +A +lY+++
  KOO21300.1 912 AVLLEALKQWNDAARLYETG 931
                 89999************987 PP

  == domain 3  score: 1.4 bits;  conditional E-value: 0.25
         MIT  11 AveeDnagnyeeAlelYkeale 32 
                 A  ++ +g  +eA+ +Y+ a +
  KOO21300.1 967 AKAKEAEGSMQEAVTAYERAND 988
                 6678999***********9966 PP

  == domain 4  score: 3.6 bits;  conditional E-value: 0.05
         MIT   16 nagnyeeAlelYkealelLlqalke.knee 44  
                  +ag++  A++ Y +al+l+lq   +  + +
  KOO21300.1 1090 KAGEFWFACKEYAKALRLFLQCSERaVD-Q 1118
                  6888999**************9875344.4 PP

>> Nic96  Nup93/Nic96
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.4   0.0      0.22     3e+02     399     440 ..     815     855 ..     813     857 .. 0.83
   2 ?    1.1   0.1     0.075     1e+02     415     450 ..     905     940 ..     893     944 .. 0.86
   3 ?    5.1   0.1    0.0046       6.4     417     451 ..     962     996 ..     954    1004 .. 0.91
   4 ?   -1.5   0.0      0.46   6.3e+02     418     450 ..    1020    1052 ..     999    1056 .. 0.85

  Alignments for each domain:
  == domain 1  score: -0.4 bits;  conditional E-value: 0.22
                 HHTGGGGT-SSSSHHHHHHHHHHHHHHHHCT-HHHHHHHHHH CS
       Nic96 399 eerlkliklddeeeflkkiieqaAreaeekgrledAilLydl 440
                 e+ lkl k+   +  +  i+++ A+++e + ++e+A+++y+ 
  KOO21300.1 815 EQALKLAKTLAPD-QVPMIAREFAKQLEFREQYEQALNMYQR 855
                 5667777776555.7889**********************95 PP

  == domain 2  score: 1.1 bits;  conditional E-value: 0.075
                 HHHHHHHHHHHHHCT-HHHHHHHHHHTT-HHHHHHH CS
       Nic96 415 kkiieqaAreaeekgrledAilLydlageydkvlel 450
                 ++ +++ A  +e+ ++++dA +Ly+  +++dk+  +
  KOO21300.1 905 RECCRECAVLLEALKQWNDAARLYETGEQLDKAAAI 940
                 66778899999999******************9877 PP

  == domain 3  score: 5.1 bits;  conditional E-value: 0.0046
                 HHHHHHHHHHHCT-HHHHHHHHHHTT-HHHHHHHH CS
       Nic96 417 iieqaAreaeekgrledAilLydlageydkvlell 451
                 +  + A++ e++g +++A+  y+ a+++d v++ll
  KOO21300.1 962 LHSEFAKAKEAEGSMQEAVTAYERANDLDSVVRLL 996
                 5678899*************************986 PP

  == domain 4  score: -1.5 bits;  conditional E-value: 0.46
                  HHHHHHHHHHCT-HHHHHHHHHHTT-HHHHHHH CS
       Nic96  418 ieqaAreaeekgrledAilLydlageydkvlel 450 
                  ++ +A++++++g +  Ai+ + la+   ++ el
  KOO21300.1 1020 ALLVAQHCQARGDFRGAIEFLVLAKRPTEAFEL 1052
                  56799***************9999998888776 PP

>> TPR_14  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.8   0.1     0.044        61       8      32 ..     837     861 ..     830     871 .. 0.86
   2 ?    3.5   0.3      0.12   1.6e+02       4      22 ..     921     939 ..     909     943 .. 0.57
   3 ?    3.6   0.1      0.11   1.6e+02       4      36 ..     963     992 ..     960    1000 .. 0.74
   4 ?   -2.0   0.0       6.7   9.2e+03      13      25 ..    1000    1012 ..     993    1013 .. 0.79
   5 ?    1.3   0.1      0.61   8.3e+02       5      24 ..    1021    1040 ..    1017    1052 .. 0.85
   6 ?    3.3   0.3      0.13   1.8e+02       5      35 ..    1089    1119 ..    1086    1126 .. 0.87
   7 ?   -1.0   0.0       3.2   4.4e+03       8      23 ..    1154    1169 ..    1152    1179 .. 0.82

  Alignments for each domain:
  == domain 1  score: 4.8 bits;  conditional E-value: 0.044
      TPR_14   8 aeallalGdpdeAiallrralalaP 32 
                 a+ l+ ++++++A+++++r l +aP
  KOO21300.1 837 AKQLEFREQYEQALNMYQRGLGDAP 861
                 78889999************98887 PP

  == domain 2  score: 3.5 bits;  conditional E-value: 0.12
      TPR_14   4 llalaeallalGdpdeAia 22 
                 + ++a+++++ +++d+A+a
  KOO21300.1 921 WNDAARLYETGEQLDKAAA 939
                 4455555555555555555 PP

  == domain 3  score: 3.6 bits;  conditional E-value: 0.11
      TPR_14   4 llalaeallalGdpdeAiallrralalaPddae 36 
                 + + a+a +a G  +eA+++++ra   +  d +
  KOO21300.1 963 HSEFAKAKEAEGSMQEAVTAYERA---NDLDSV 992
                 55668999999999********99...444444 PP

  == domain 4  score: -2.0 bits;  conditional E-value: 6.7
      TPR_14   13 alGdpdeAiallr 25  
                  al++pd+A+a+ r
  KOO21300.1 1000 ALEQPDRAMAIVR 1012
                  789*****99877 PP

  == domain 5  score: 1.3 bits;  conditional E-value: 0.61
      TPR_14    5 lalaeallalGdpdeAiall 24  
                  l+ a+ + a+Gd+++Ai+ l
  KOO21300.1 1021 LLVAQHCQARGDFRGAIEFL 1040
                  66789999*********976 PP

  == domain 6  score: 3.3 bits;  conditional E-value: 0.13
      TPR_14    5 lalaeallalGdpdeAiallrralalaPdda 35  
                  l+++e+ +a  ++++A++l+ ++ ++a d+a
  KOO21300.1 1089 LKAGEFWFACKEYAKALRLFLQCSERAVDQA 1119
                  678999****************999988875 PP

  == domain 7  score: -1.0 bits;  conditional E-value: 3.2
      TPR_14    8 aeallalGdpdeAial 23  
                   ++++alG++ +A++ 
  KOO21300.1 1154 FRLYMALGNYPQAAKT 1169
                  589******9998875 PP

>> TPR_11  TPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.6   0.1     0.077   1.1e+02       8      20 ..     844     856 ..     843     858 .. 0.86
   2 ?   -1.1   0.8       1.1   1.5e+03       7      28 ..     918     939 ..     916     941 .. 0.81
   3 ?    4.5   0.1      0.02        28       7      24 ..     973     990 ..     970     991 .. 0.89
   4 ?    0.3   0.0      0.43   5.9e+02       3      15 ..    1156    1168 ..    1155    1169 .. 0.87
   5 ?   -3.4   0.0       6.1   8.4e+03      28      40 ..    1281    1293 ..    1281    1294 .. 0.83

  Alignments for each domain:
  == domain 1  score: 2.6 bits;  conditional E-value: 0.077
      TPR_11   8 GkyeeAieaYkkA 20 
                  +ye+A++ Y++ 
  KOO21300.1 844 EQYEQALNMYQRG 856
                 69********986 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 1.1
      TPR_11   7 qGkyeeAieaYkkAlkldPdna 28 
                 + ++++A   Y++  +ld   a
  KOO21300.1 918 LKQWNDAARLYETGEQLDKAAA 939
                 5689999999999999998765 PP

  == domain 3  score: 4.5 bits;  conditional E-value: 0.02
      TPR_11   7 qGkyeeAieaYkkAlkld 24 
                  G   eA++aY++A +ld
  KOO21300.1 973 EGSMQEAVTAYERANDLD 990
                 68889*********9998 PP

  == domain 4  score: 0.3 bits;  conditional E-value: 0.43
      TPR_11    3 ayyeqGkyeeAie 15  
                  +y+++G+y++A +
  KOO21300.1 1156 LYMALGNYPQAAK 1168
                  79*********76 PP

  == domain 5  score: -3.4 bits;  conditional E-value: 6.1
      TPR_11   28 aeayynLGlayyk 40  
                  +e  + +G+ay +
  KOO21300.1 1281 PEYRSQIGEAYKR 1293
                  7888999***987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1417 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       414  (0.0230911); expected 358.6 (0.02)
Passed bias filter:                      370  (0.020637); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                        17  (0.000948185); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 0.88u 0.29s 00:00:01.17 Elapsed: 00:00:00.47
# Mc/sec: 9086.16
//
Query:       KOO21301.1  [L=530]
Description: hypothetical protein Ctob_000144 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (530 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       364  (0.0203023); expected 358.6 (0.02)
Passed bias filter:                      320  (0.0178482); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.51u 0.23s 00:00:00.74 Elapsed: 00:00:00.42
# Mc/sec: 3816.30
//
Query:       KOO21302.1  [L=782]
Description: tpr-like protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.8e-18   64.6   0.0    3.1e-06   27.3   0.0    6.7  7  PPR_2     PPR repeat family
    1.3e-14   54.1   2.0    1.4e-07   31.1   0.6    4.3  5  PPR_long  Pentacotripeptide-repeat region of PRORP
      3e-10   40.0   0.0      0.011   15.8   0.0    6.1  6  PPR_3     Pentatricopeptide repeat domain
    0.00014   21.5   0.0       0.39   10.5   0.0    4.9  5  PPR_1     PPR repeat
    0.00029   20.9   0.7        5.9    7.4   0.0    5.4  4  PPR       PPR repeat
  ------ inclusion threshold ------
        0.1   12.7   0.0       0.21   11.7   0.0    1.7  1  FtsJ      FtsJ-like methyltransferase


Domain annotation for each model (and alignments):
>> PPR_2  PPR repeat family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.1   0.0     0.001         3      26      47 ..      53      74 ..      50      76 .. 0.89
   2 ?   -0.2   0.0      0.41   1.2e+03      10      30 ..     157     178 ..     152     181 .. 0.83
   3 ?   -0.7   0.0      0.55   1.7e+03       6      34 ..     198     226 ..     197     229 .. 0.79
   4 !    9.3   0.0   0.00043       1.3       6      46 ..     233     274 ..     230     277 .. 0.88
   5 !   27.3   0.0     1e-09   3.1e-06       4      48 ..     267     312 ..     264     313 .. 0.93
   6 !    9.5   0.0   0.00037       1.1      20      48 ..     390     418 ..     388     420 .. 0.85
   7 !   13.7   0.0   1.7e-05     0.052       3      40 ..     408     445 ..     406     448 .. 0.92

  Alignments for each domain:
  == domain 1  score: 8.1 bits;  conditional E-value: 0.001
       PPR_2 26 fneMkkrglePnsyTysilikg 47
                +  M++ gl+P++ ++  +i++
  KOO21302.1 53 LLRMQQSGLQPDEQSFAAVIRA 74
                567***************9986 PP

  == domain 2  score: -0.2 bits;  conditional E-value: 0.41
       PPR_2  10 Isglck.kgkveeAfklfneMk 30 
                 +sg++k  g++ eA++l   M+
  KOO21302.1 157 LSGCAKqSGRSGEALQLVGMME 178
                 67888779*********98886 PP

  == domain 3  score: -0.7 bits;  conditional E-value: 0.55
       PPR_2   6 yNtlIsglckkgkveeAfklfneMkkrgl 34 
                 y + I+++ +  + e A++l+  Mk  g+
  KOO21302.1 198 YAAAIAACDESCDKEAALELLPRMKTLGV 226
                 556666666778889**********8876 PP

  == domain 4  score: 9.3 bits;  conditional E-value: 0.00043
       PPR_2   6 yNtlIsglckkgk.veeAfklfneMkkrglePnsyTysilik 46 
                 y + I+++ ++g+ v+ A  l  +M++ +l+ ++ +y+ l++
  KOO21302.1 233 YHAAITACRHDGAdVRTARALVAQMRQEKLSLTTRSYNCLLQ 274
                 66778888888888**************************97 PP

  == domain 5  score: 27.3 bits;  conditional E-value: 1e-09
       PPR_2   4 vtyNtlIsglckkgk.veeAfklfneMkkrglePnsyTysilikgl 48 
                  +yN+l++    +g+  +eAf +++e +++gl P+++Ty  l++++
  KOO21302.1 267 RSYNCLLQVVSAAGEsGDEAFAVLDELERQGLAPDEITYLHLLTAC 312
                 58**********99989************************99994 PP

  == domain 6  score: 9.5 bits;  conditional E-value: 0.00037
       PPR_2  20 eeAfklfneMkkrglePnsyTysilikgl 48 
                 + A+ l+  M krg+ P++ Ty   i  +
  KOO21302.1 390 QRALALMPGMLKRGVVPTERTYAAAIELC 418
                 678999999*************9888654 PP

  == domain 7  score: 13.7 bits;  conditional E-value: 1.7e-05
       PPR_2   3 vvtyNtlIsglckkgkveeAfklfneMkkrglePnsyT 40 
                   ty + I  +++  +v eAf+l+  M   gl+P+ y+
  KOO21302.1 408 ERTYAAAIELCARSSEVAEAFRLLYSMPAAGLRPDGYS 445
                 569********************************987 PP

>> PPR_long  Pentacotripeptide-repeat region of PRORP
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.2   0.0     0.066     2e+02      80     103 ..      55      78 ..      45      98 .. 0.72
   2 !   31.1   0.6   4.8e-11   1.4e-07      72     177 ..     212     319 ..     196     337 .. 0.84
   3 !   16.3   0.0   1.6e-06    0.0048      70     123 ..     388     441 ..     374     449 .. 0.88
   4 ?   -1.1   0.0      0.34     1e+03     100     174 ..     570     647 ..     567     660 .. 0.65
   5 ?   -3.0   0.0       1.3   3.8e+03       4      24 ..     728     749 ..     709     751 .. 0.77

  Alignments for each domain:
  == domain 1  score: 1.2 bits;  conditional E-value: 0.066
                 HHHHTT----HHHHHHHHHHHHHT CS
    PPR_long  80 amkakgvspnEatvtalarlaaak 103
                 +m+++g +p E +++a++r  a +
  KOO21302.1  55 RMQQSGLQPDEQSFAAVIRAGAGT 78 
                 688888888888888888876655 PP

  == domain 2  score: 31.1 bits;  conditional E-value: 4.8e-11
                 HHHHHHHHHHHHTT-.---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-S---HHHHHHHHHHHHHTT-H.HHHHHHHHHHHHCT----HHHHHHHHH CS
    PPR_long  72 argfevfeamkakgv.spnEatvtalarlaaakedgdlafelvkemekagvsPrLRsyaPaLaayckagda.dkaleveehlkasgveleEaelaaLLk 168
                 ++++e   +mk+ gv +p+Ea  +a+       +d  +a +lv++m++ ++s   Rsy+ +L+  + ag+  d a++v + l+ +g++++E  +  LL 
  KOO21302.1 212 EAALELLPRMKTLGVgAPAEAYHAAITACRHDGADVRTARALVAQMRQEKLSLTTRSYNCLLQVVSAAGESgDEAFAVLDELERQGLAPDEITYLHLLT 310
                 4567888899998874689999999988888889999*******************************997479************************9 PP

                 HHHHTT-HH CS
    PPR_long 169 vsakagred 177
                 ++  +  + 
  KOO21302.1 311 ACRPTAAQA 319
                 997665555 PP

  == domain 3  score: 16.3 bits;  conditional E-value: 1.6e-06
                 HHHHHHHHHHHHHHTT----HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-S-- CS
    PPR_long  70 alargfevfeamkakgvspnEatvtalarlaaakedgdlafelvkemekagvsP 123
                   +r++  +  m ++gv p E t++a + l+a +++  +af+l  +m +ag+ P
  KOO21302.1 388 PWQRALALMPGMLKRGVVPTERTYAAAIELCARSSEVAEAFRLLYSMPAAGLRP 441
                 56888999999**************************************99988 PP

  == domain 4  score: -1.1 bits;  conditional E-value: 0.34
                 HHHTT-HHHHHHHHHHHHHH-S---HHHHHHHHHHHHHTT-...HHHHHHHHHHHHHCT----HHHHHHHHHHHHHTT CS
    PPR_long 100 aaakedgdlafelvkemekagvsPrLRsyaPaLaayckagd...adkaleveehlkasgveleEaelaaLLkvsakag 174
                 ++a++   +a ++ +  ++a+v  r   y+ aL+ay  a+       ++   + ++ +gv l    l   Lk+ ++ag
  KOO21302.1 570 CVANRAWREAAHVLSVAREANVRVRGEDYGKALHAYGAANPpppWSATVRLLDEIAEQGVVLPRRALLHTLKAGVAAG 647
                 667777777888888888999999999999999999877641113444555555566666666555555555555555 PP

  == domain 5  score: -3.0 bits;  conditional E-value: 1.3
                 XXXXX-HHHH.HHHHHHHHHHH CS
    PPR_long   4 kkkkktpese.lrrqldkCske 24 
                 +k++++p+   l+r+l+ Cs++
  KOO21302.1 728 RKADQAPTGRlLERALHACSQS 749
                 5666777665257789999886 PP

>> PPR_3  Pentatricopeptide repeat domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.1   0.0      0.28   8.4e+02       5      24 ..      55      74 ..      52      79 .. 0.56
   2 ?    3.2   0.0      0.03        91      18      46 ..     198     226 ..     194     241 .. 0.84
   3 !    8.8   0.0   0.00057       1.7       9      60 ..     224     276 ..     217     278 .. 0.81
   4 !   15.8   0.0   3.8e-06     0.011       2      26 ..     289     313 ..     288     324 .. 0.90
   5 ?    1.8   0.0     0.084   2.5e+02      33      60 ..     391     418 ..     389     421 .. 0.84
   6 ?    1.4   0.0      0.12   3.5e+02       2      42 ..     430     470 ..     429     473 .. 0.91

  Alignments for each domain:
  == domain 1  score: 0.1 bits;  conditional E-value: 0.28
       PPR_3  5 emerkgikldvvtYthLLta 24
                 m++ g+++d   + + ++a
  KOO21302.1 55 RMQQSGLQPDEQSFAAVIRA 74
                35555555555555555554 PP

  == domain 2  score: 3.2 bits;  conditional E-value: 0.03
       PPR_3  18 YthLLtayanagnkklalevlermkkkgi 46 
                 Y + + a+    +k++ale l rmk  g+
  KOO21302.1 198 YAAAIAACDESCDKEAALELLPRMKTLGV 226
                 88889999999**************8887 PP

  == domain 3  score: 8.8 bits;  conditional E-value: 0.00057
       PPR_3   9 kgikldvvtYthLLtayanag.nkklalevlermkkkgikPtvvtyNailgvi 60 
                  g+      Y + +ta+   g + + a   +++m++++++ t  +yN +l+v+
  KOO21302.1 224 LGVGAPAEAYHAAITACRHDGaDVRTARALVAQMRQEKLSLTTRSYNCLLQVV 276
                 55555556788889999888756789999*********************986 PP

  == domain 4  score: 15.8 bits;  conditional E-value: 3.8e-06
       PPR_3   2 ilremerkgikldvvtYthLLtaya 26 
                 +l+e+er+g+ +d +tY hLLta+ 
  KOO21302.1 289 VLDELERQGLAPDEITYLHLLTACR 313
                 89*********************85 PP

  == domain 5  score: 1.8 bits;  conditional E-value: 0.084
       PPR_3  33 lalevlermkkkgikPtvvtyNailgvi 60 
                 +al  +  m k g+ Pt  ty a ++++
  KOO21302.1 391 RALALMPGMLKRGVVPTERTYAAAIELC 418
                 5666677799*************99999 PP

  == domain 6  score: 1.4 bits;  conditional E-value: 0.12
       PPR_3   2 ilremerkgikldvvtYthLLtayanagnkklalevlermk 42 
                 +l  m + g+++d++   +  ta+a  g++ ++l+ l +++
  KOO21302.1 430 LLYSMPAAGLRPDGYSIVSAATAAAAFGEYPIVLQLLHEVE 470
                 77789999**************************9999986 PP

>> PPR_1  PPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.0       1.1   3.1e+03       2      15 ..      60      73 ..      59      74 .. 0.85
   2 ?    0.1   0.0      0.23   6.9e+02      20      34 .]     164     178 ..     163     178 .. 0.89
   3 ?    1.5   0.4     0.083   2.5e+02      24      33 ..     284     293 ..     260     294 .. 0.64
   4 ?    1.5   0.0     0.082   2.5e+02       2      10 ..     297     305 ..     296     311 .. 0.87
   5 !   10.5   0.0   0.00013      0.39       1      33 [.     402     434 ..     402     435 .. 0.94

  Alignments for each domain:
  == domain 1  score: -2.0 bits;  conditional E-value: 1.1
                S----HHHHHHHHH CS
       PPR_1  2 GlkPdvvTYNtLId 15
                Gl+Pd  ++  +I 
  KOO21302.1 60 GLQPDEQSFAAVIR 73
                9*****99998885 PP

  == domain 2  score: 0.1 bits;  conditional E-value: 0.23
                 TS-HHHHHHHHHHHH CS
       PPR_1  20 aGrvdeAfelfdeMe 34 
                  Gr  eA++l+  Me
  KOO21302.1 164 SGRSGEALQLVGMME 178
                 69999*******997 PP

  == domain 3  score: 1.5 bits;  conditional E-value: 0.083
                 HHHHHHHHHH CS
       PPR_1  24 deAfelfdeM 33 
                 deAf ++de 
  KOO21302.1 284 DEAFAVLDEL 293
                 8899999885 PP

  == domain 4  score: 1.5 bits;  conditional E-value: 0.082
                 S----HHHH CS
       PPR_1   2 GlkPdvvTY 10 
                 Gl Pd +TY
  KOO21302.1 297 GLAPDEITY 305
                 99******* PP

  == domain 5  score: 10.5 bits;  conditional E-value: 0.00013
                 SS----HHHHHHHHHHHHHTS-HHHHHHHHHHH CS
       PPR_1   1 kGlkPdvvTYNtLIdGlCkaGrvdeAfelfdeM 33 
                 +G++P+  TY   I  + +  +v eAf+l+  M
  KOO21302.1 402 RGVVPTERTYAAAIELCARSSEVAEAFRLLYSM 434
                 69***************************9777 PP

>> PPR  PPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.6   0.0     0.066     2e+02       4      27 ..     155     178 ..     154     180 .. 0.83
   2 ?    0.7   0.0      0.27   8.2e+02      17      31 .]     212     226 ..     209     226 .. 0.90
   3 ?    3.1   0.0     0.047   1.4e+02      16      31 .]     283     298 ..     267     298 .. 0.70
   4 !    7.4   0.0     0.002       5.9       2      30 ..     410     438 ..     409     439 .. 0.91

  Alignments for each domain:
  == domain 1  score: 2.6 bits;  conditional E-value: 0.066
         PPR   4 nslIsgycknGkleeAlelfkeMk 27 
                 n+l  +  ++G+  eAl+l   M+
  KOO21302.1 155 NALSGCAKQSGRSGEALQLVGMME 178
                 5566666799************97 PP

  == domain 2  score: 0.7 bits;  conditional E-value: 0.27
         PPR  17 eeAlelfkeMkekGi 31 
                 e Alel+ +Mk  G+
  KOO21302.1 212 EAALELLPRMKTLGV 226
                 67*********9996 PP

  == domain 3  score: 3.1 bits;  conditional E-value: 0.047
         PPR  16 leeAlelfkeMkekGi 31 
                  +eA+ +++e+++ G+
  KOO21302.1 283 GDEAFAVLDELERQGL 298
                 599*******999985 PP

  == domain 4  score: 7.4 bits;  conditional E-value: 0.002
         PPR   2 tynslIsgycknGkleeAlelfkeMkekG 30 
                 ty + I  ++++ ++ eA++l+  M   G
  KOO21302.1 410 TYAAAIELCARSSEVAEAFRLLYSMPAAG 438
                 888999*******************8877 PP

>> FtsJ  FtsJ-like methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   6.9e-05      0.21      56      95 ..       3      42 ..       1     163 [. 0.93

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 6.9e-05
                SSHHHTTEEEECS-CCCSSHHHHHCHCHHHSSEEEEEE-- CS
        FtsJ 56 pmaplpgvttiqgditdpetiekikealserkvdlvvsDg 95
                p +pl gv +++gd+t++++++ +   l+++ +dl +sD 
  KOO21302.1  3 PLEPLVGVDFVKGDFTEKTVQQDVVGRLNGELCDLLLSDT 42
                457889********************************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (782 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       416  (0.0232026); expected 358.6 (0.02)
Passed bias filter:                      324  (0.0180713); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.66u 0.28s 00:00:00.94 Elapsed: 00:00:00.46
# Mc/sec: 5093.76
//
Query:       KOO21303.1  [L=551]
Description: hypothetical protein Ctob_000142 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
      4e-08   33.1  15.2    1.6e-05   24.7   0.4    4.1  3  TB2_DP1_HVA22  TB2/DP1, HVA22 family


Domain annotation for each model (and alignments):
>> TB2_DP1_HVA22  TB2/DP1, HVA22 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.2      0.34   6.1e+03      25      43 ..     167     185 ..     161     197 .. 0.43
   2 !   12.8   3.6   4.8e-06     0.086       1      72 [.     201     287 ..     201     291 .. 0.74
   3 !   24.7   0.4   8.9e-10   1.6e-05      13      61 ..     399     447 ..     366     458 .. 0.82

  Alignments for each domain:
  == domain 1  score: -2.8 bits;  conditional E-value: 0.34
  TB2_DP1_HVA22  25 vvfafltvvesladvllsw 43 
                    vv+a++  + s++ +  + 
     KOO21303.1 167 VVCACCARLMSWIGLHAQA 185
                    4444444444444333332 PP

  == domain 2  score: 12.8 bits;  conditional E-value: 4.8e-06
  TB2_DP1_HVA22   1 PayaslkaleskeksdetkwltYWvvfafltvvesladvllswi...............Pf..YylfKllfllwlvlpqtqgatyvYek 72 
                    P++ sl +l+ +  ++++ +l+YWvv a++ +++ l+  +  ++               P+   y++ ++++lwl+lp  +g ++ Ye 
     KOO21303.1 201 PMFRSLWLLKAS-PAEQRPCLQYWVVWASVELCKGLLHAVP-FVprlgraalpllerwwPLtiLYEIPFCAYLWLQLPGRRGLHLAYEF 287
                    788899999544.443456***************9996655.44344555554444444226699999*****************9985 PP

  == domain 3  score: 24.7 bits;  conditional E-value: 8.9e-10
  TB2_DP1_HVA22  13 eksdetkwltYWvvfafltvvesladvllswiPfYylfKllfllwlvlp 61 
                    +++ +t+ l YW+  a+++++ + ++ +l wiPf  ++ llf+lwl+  
     KOO21303.1 399 SQAAATQQLRYWLYHALMWFAVRQLEPVLVWIPFMTHLQLLFVLWLQCN 447
                    44456789*****************99999****************865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (551 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       705  (0.0393218); expected 358.6 (0.02)
Passed bias filter:                      247  (0.0137766); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.54u 0.27s 00:00:00.81 Elapsed: 00:00:00.45
# Mc/sec: 3672.75
//
Query:       KOO21304.1  [L=268]
Description: hypothetical protein Ctob_000141 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.032   14.5  15.9      0.072   13.3  15.9    1.6  1  IBR       IBR domain, a half RING-finger domain


Domain annotation for each model (and alignments):
>> IBR  IBR domain, a half RING-finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3  15.9     4e-06     0.072      20      59 ..      94     136 ..      85     139 .. 0.83

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 4e-06
         IBR  20 wCprpdCeaiiekseg.cksvtCskCgfefCfnCkkew....Heg 59 
                  Cp   Ce ++ ++ + c  ++Cs+C+ +fC+ C  +     H++
  KOO21304.1  94 SCP--SCEVFCDPDPDgCIAMKCSSCNVAFCWLCFMPCgcdaHPH 136
                 699..9*****999888999*************965554444665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (268 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       650  (0.0362541); expected 358.6 (0.02)
Passed bias filter:                      310  (0.0172904); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.24s 00:00:00.65 Elapsed: 00:00:00.39
# Mc/sec: 2081.55
//
Query:       KOO21305.1  [L=667]
Description: katanin p80 wd40 repeat-containing subunit b1-like 1-like protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.1e-44  148.6  12.9    5.2e-12   46.1   0.5    7.8  8  WD40           WD domain, G-beta repeat
    1.1e-27   97.0   0.0    1.9e-27   96.2   0.0    1.3  1  Katanin_con80  con80 domain of Katanin
    5.1e-14   52.4   0.0    0.00044   20.5   0.0    5.1  5  ANAPC4_WD40    Anaphase-promoting complex subunit 4 WD40 doma
    4.3e-07   30.0   0.0    0.00053   19.9   0.0    1.9  2  eIF2A          Eukaryotic translation initiation factor eIF2A
      0.002   16.9   0.4        6.7    5.2   0.0    3.3  3  Nup160         Nucleoporin Nup120/160
     0.0036   16.3   0.8       0.14   11.1   0.2    2.9  2  Ge1_WD40       WD40 region of Ge1, enhancer of mRNA-decapping
  ------ inclusion threshold ------
       0.18   10.3   0.0       0.44    9.0   0.0    1.6  1  Cytochrom_D1   Cytochrome D1 heme domain
       0.26    9.5   0.0       0.84    7.9   0.0    1.7  2  Frtz           WD repeat-containing and planar cell polarity 
        1.1    9.7   3.1        4.3    7.9   0.1    3.2  3  HEAT           HEAT repeat


Domain annotation for each model (and alignments):
>> WD40  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.0     5e-06    0.0099       3      37 ..       4      40 ..       2      40 .. 0.86
   2 !   27.5   0.1   1.9e-09   3.8e-06       4      38 .]      48      83 ..      45      83 .. 0.93
   3 !   32.7   0.2   4.3e-11   8.5e-08       5      38 .]      91     125 ..      87     125 .. 0.91
   4 !   46.1   0.5   2.6e-15   5.2e-12       2      38 .]     130     167 ..     129     167 .. 0.95
   5 !   20.3   0.0   3.6e-07   0.00072       1      38 []     171     209 ..     171     209 .. 0.93
   6 ?    3.7   0.0     0.063   1.3e+02       9      37 ..     224     249 ..     214     249 .. 0.84
   7 ?    2.7   0.0      0.13   2.7e+02      15      38 .]     269     293 ..     251     293 .. 0.74
   8 ?   -2.4   0.1       5.6   1.1e+04      14      28 ..     409     435 ..     401     444 .. 0.63

  Alignments for each domain:
  == domain 1  score: 16.7 bits;  conditional E-value: 5e-06
                EEEEEESS.SSEEEEE.EETTSSEEEEEETTSEEEEE CS
        WD40  3 clrtltGH.ssvtsla.fspdgawlasGsdDgtvriW 37
                +l+++ +H s v++l+   ++ga +++G++D++v +W
  KOO21305.1  4 KLQEFVAHgSAVNCLQfGRKSGAVMVTGGEDKKVNVW 40
                578999**777****87777777799*********** PP

  == domain 2  score: 27.5 bits;  conditional E-value: 1.9e-09
                EEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40  4 lrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38
                + +ltGH ssv ++ f+++ + +++Gs  gt+++Wd
  KOO21305.1 48 ILSLTGHtSSVECVTFDSNESTVIAGSAGGTLKLWD 83
                5689***999*************************9 PP

  == domain 3  score: 32.7 bits;  conditional E-value: 4.3e-11
                 EEEESS..SSEEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40   5 rtltGH..ssvtslafspdgawlasGsdDgtvriWd 38 
                 rtltGH  +++ s++++p+g ++asGs D +++iWd
  KOO21305.1  91 RTLTGHrsNCI-SVQWHPYGEFFASGSVDTNLKIWD 125
                 89****95558.***********************9 PP

  == domain 4  score: 46.1 bits;  conditional E-value: 2.6e-15
                 EEEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40   2 qclrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 
                 +c++t++GH  +v+ +afspdg+w++sG+dDg v++Wd
  KOO21305.1 130 SCIQTYKGHtRGVRQIAFSPDGRWVVSGGDDGVVKLWD 167
                 79*******766*************************9 PP

  == domain 5  score: 20.3 bits;  conditional E-value: 3.6e-07
                 TEEEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40   1 gqclrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 
                 g++++++  H  ++++la +p   ++as+s D+t+r+Wd
  KOO21305.1 171 GRLVHEFAPHsAPISGLAMHPTEFLMASASVDRTLRLWD 209
                 578999999*777*************************9 PP

  == domain 6  score: 3.7 bits;  conditional E-value: 0.063
                 SSSSEEEEEEETTSSEEEEEETTSEEEEE CS
        WD40   9 GHssvtslafspdgawlasGsdDgtvriW 37 
                 G+  ++ + fs dg+ l+sG    ++r+W
  KOO21305.1 224 GQ--IRRVMFSEDGSALLSGA-EESLRVW 249
                 33..77788**********99.******9 PP

  == domain 7  score: 2.7 bits;  conditional E-value: 0.13
                 EEEEETTSSEEEEEE.TTSEEEEEE CS
        WD40  15 slafspdgawlasGs.dDgtvriWd 38 
                 +l++sp ++ l++Gs +   v +W+
  KOO21305.1 269 DLCTSPGQQKLLAGSvREAIVSVWN 293
                 7899**********96699999997 PP

  == domain 8  score: -2.4 bits;  conditional E-value: 5.6
                 EEEE............EETTSSEEEEE CS
        WD40  14 tsla............fspdgawlasG 28 
                 ts+a            fs +g+  + G
  KOO21305.1 409 TSCAsasiaeapppeaFSASGNHASVG 435
                 555556666777777788888886555 PP

>> Katanin_con80  con80 domain of Katanin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   96.2   0.0   9.7e-31   1.9e-27       8     158 ..     497     659 ..     491     661 .. 0.94

  Alignments for each domain:
  == domain 1  score: 96.2 bits;  conditional E-value: 9.7e-31
  Katanin_con80   8 svLksRlkkLqvvrtlweqndik.saveaivklqdqsvlvDvlsilkekkesitLdlcvallplleeLLkskyesyvkvglevlrlilknFgseik 102
                    + L sRl  L++++t+w+ +++k ++++ +++l+d+sv+ Dv+++   k  si L++++ llpll++LL+s ye+ v +++++++ +  +Fg++ik
     KOO21305.1 497 ACLHSRLDALRTLHTFWQAGQVKqQMLQRLQQLEDPSVTYDVVAAGIIKGASIDLECVLVLLPLLMSLLDSTYEDVVLTAMRAVSHLSLSFGPLIK 592
                    5799******************835899******************************************************************** PP

  Katanin_con80 103 sal.sapss...........svgvdlsreeRlekcsecfkeLqkirkllkklarrsgkvgsaarelel 158
                    ++    +++           s+ vdl++e R+++c++ ++++  + + lk++a + g++gs+a++l +
     KOO21305.1 593 NTRgV-AQDmlggeyrlsgmSEPVDLNAEARRQRCQAAYEHFSGLIPRLKRIAPARGSLGSTAKDLLA 659
                    ***62.34458899**************************************************9976 PP

>> ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.5   0.0      0.01        21      37      91 ..      11      65 ..       6      66 .. 0.90
   2 !   11.1   0.1   0.00019      0.38      35      85 ..      52     102 ..      38     104 .. 0.86
   3 !   11.7   0.0   0.00013      0.25      42      79 ..     101     138 ..      95     141 .. 0.88
   4 !   20.5   0.0   2.2e-07   0.00044      36      84 ..     137     184 ..     132     190 .. 0.89
   5 ?    5.4   0.0     0.011        22      39      89 ..     182     231 ..     178     234 .. 0.86

  Alignments for each domain:
  == domain 1  score: 5.5 bits;  conditional E-value: 0.01
  ANAPC4_WD40 37 edsevrsLaW.kpdgklLavaysdgevrlldaesgkvvhslsvksekavtclgWge 91
                 ++s v++L++ +++g +++ + +d +v++  +   + + sl+ +++ +v c+++ +
   KOO21305.1 11 HGSAVNCLQFgRKSGAVMVTGGEDKKVNVWAIGRPNAILSLTGHTS-SVECVTFDS 65
                 7899999*997789***************************99988.5****9976 PP

  == domain 2  score: 11.1 bits;  conditional E-value: 0.00019
  ANAPC4_WD40  35 dkedsevrsLaWkpdgklLavaysdgevrlldaesgkvvhslsvksekavt 85 
                  +++ s+v+++ +  +++    + + g+++l d e++kv ++l+ +++++++
   KOO21305.1  52 TGHTSSVECVTFDSNESTVIAGSAGGTLKLWDLEQAKVARTLTGHRSNCIS 102
                  67899*************************************999987665 PP

  == domain 3  score: 11.7 bits;  conditional E-value: 0.00013
  ANAPC4_WD40  42 rsLaWkpdgklLavaysdgevrlldaesgkvvhslsvk 79 
                   s++W+p g+++a +  d+++++ d+  + ++++++ +
   KOO21305.1 101 ISVQWHPYGEFFASGSVDTNLKIWDIRRKSCIQTYKGH 138
                  5899***************************9998755 PP

  == domain 4  score: 20.5 bits;  conditional E-value: 2.2e-07
  ANAPC4_WD40  36 kedsevrsLaWkpdgklLavaysdgevrlldaesgkvvhslsvksekav 84 
                  ++ + vr++a++pdg+  + + +dg v+l d   g++vh++  +s   +
   KOO21305.1 137 GHTRGVRQIAFSPDGRWVVSGGDDGVVKLWDLTAGRLVHEFAPHSAP-I 184
                  57788************************************999874.5 PP

  == domain 5  score: 5.4 bits;  conditional E-value: 0.011
  ANAPC4_WD40  39 sevrsLaWkpdgklLavaysdgevrlldaesgkvvhslsvksekavtclgW 89 
                    +++La +p + l+a a  d ++rl d es + v  ++ +s + +  + +
   KOO21305.1 182 APISGLAMHPTEFLMASASVDRTLRLWDLESFEQVCCMPPDSGQ-IRRVMF 231
                  6799***************************9999998888885.666655 PP

>> eIF2A  Eukaryotic translation initiation factor eIF2A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   0.0   2.8e-06    0.0055      76     177 ..      28     125 ..      14     128 .. 0.75
   2 !   19.9   0.0   2.6e-07   0.00053      70     159 ..      64     155 ..      48     176 .. 0.81

  Alignments for each domain:
  == domain 1  score: 16.6 bits;  conditional E-value: 2.8e-06
                 EEESSSSCEEEEEEC.SCEEEEEEE..EES--EEEE-TTSSEEEEE-TTSSS-EEEEEETT..TTEEEEEEE-TT--EEEE-TTSSEEEEEE-TTT-SS CS
       eIF2A  76 viyGkmpakvslfdl.kvkviskle..eqkrNtiffspkgklvllaGfgnlaGeleiwdvk..kkkkiakaeaanatlvewspdgryvlTattaprlrv 169
                 ++ G  ++kv+++   + ++i +l   +++  ++ f++++  v+ +  g   G+l++wd +  k+    + + +n+ +v+w+p g++++  +      v
  KOO21305.1  28 MVTGGEDKKVNVWAIgRPNAILSLTghTSSVECVTFDSNESTVIAGSAG---GTLKLWDLEqaKVARTLTGHRSNCISVQWHPYGEFFASGS------V 117
                 5677778888888875577777765115567899999999999987665...77******94444555566899**************7544......6 PP

                 S-EEEEEE CS
       eIF2A 170 dngfkiws 177
                 d+++kiw 
  KOO21305.1 118 DTNLKIWD 125
                 77777775 PP

  == domain 2  score: 19.9 bits;  conditional E-value: 2.6e-07
                 TSS-EEEEESSSSCEEEEEECS.CEEEEEEEEES--EE..EE-TTSSEEEEE-TTSSS-EEEEEETTTTEEEEEEE-TT..--EEEE-TTSSEEE CS
       eIF2A  70 kskefaviyGkmpakvslfdlk.vkviskleeqkrNti..ffspkgklvllaGfgnlaGeleiwdvkkkkkiakaeaan..atlvewspdgryvl 159
                 +s+e +vi G +  + +l+dl+ +kv  +l  ++ N+i   ++p g++++ +       +l+iwd  +k++i++++  +    ++ +spdgr+v+
  KOO21305.1  64 DSNESTVIAGSAGGTLKLWDLEqAKVARTLTGHRSNCIsvQWHPYGEFFASGSV---DTNLKIWDIRRKSCIQTYKGHTrgVRQIAFSPDGRWVV 155
                 567889**************96488888899999998633799****9998654...5579******9999999986541145799*******98 PP

>> Nup160  Nucleoporin Nup120/160
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.0   0.1    0.0078        15     223     255 ..      58      92 ..      45     105 .. 0.86
   2 ?    3.5   0.0     0.011        22     237     255 ..     116     134 ..     109     150 .. 0.83
   3 !    5.2   0.0    0.0034       6.7     231     253 ..     194     216 ..     169     227 .. 0.81

  Alignments for each domain:
  == domain 1  score: 4.0 bits;  conditional E-value: 0.0078
                 T.......TTTEEEEEETT-EEEEEETTTTEEEEE CS
      Nup160 223 vavvei..gqtylfalsrdgkLrvWnlltgkclat 255
                 v +v+   +++++ a s  g+L++W+l+ +k+++t
  KOO21305.1  58 VECVTFdsNESTVIAGSAGGTLKLWDLEQAKVART 92 
                 55666678899999*****************9998 PP

  == domain 2  score: 3.5 bits;  conditional E-value: 0.011
                 ETT-EEEEEETTTTEEEEE CS
      Nup160 237 srdgkLrvWnlltgkclat 255
                 s+d +L++W+++ ++c+ t
  KOO21305.1 116 SVDTNLKIWDIRRKSCIQT 134
                 89***************99 PP

  == domain 3  score: 5.2 bits;  conditional E-value: 0.0034
                 TEEEEEETT-EEEEEETTTTEEE CS
      Nup160 231 tylfalsrdgkLrvWnlltgkcl 253
                  + +++s+d++Lr+W+l++  ++
  KOO21305.1 194 FLMASASVDRTLRLWDLESFEQV 216
                 456889***********986655 PP

>> Ge1_WD40  WD40 region of Ge1, enhancer of mRNA-decapping protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.9   0.0     0.044        88     180     233 ..      47     108 ..      33     115 .. 0.78
   2 !   11.1   0.2     7e-05      0.14     184     239 ..     135     185 ..     110     214 .. 0.81

  Alignments for each domain:
  == domain 1  score: 1.9 bits;  conditional E-value: 0.044
    Ge1_WD40 180 gllkieehs.liveaafspdGtalatasedGevkffqvylede......eeprCLh.eWkPh 233
                 ++l ++ h+  + + +f ++  ++ + s+ G++k++ + + +       ++  C+  +W+P+
  KOO21305.1  47 AILSLTGHTsSVECVTFDSNESTVIAGSAGGTLKLWDLEQAKVartltgHRSNCISvQWHPY 108
                 566777775499999**99999999999********99887765666665666764478876 PP

  == domain 2  score: 11.1 bits;  conditional E-value: 7e-05
    Ge1_WD40 184 ieehs.liveaafspdGtalatasedGevkffqvyledeeeprCLheWkPhdGksls 239
                  + h+  + + afspdG  +     dG+vk++ +     +  r +he+ Ph   ++s
  KOO21305.1 135 YKGHTrGVRQIAFSPDGRWVVSGGDDGVVKLWDL-----TAGRLVHEFAPHSA-PIS 185
                 34555469999*******************9976.....57899999999974.555 PP

>> Cytochrom_D1  Cytochrome D1 heme domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.0   0.0   0.00022      0.44      17      74 ..     121     178 ..     111     229 .. 0.77

  Alignments for each domain:
  == domain 1  score: 9.0 bits;  conditional E-value: 0.00022
                   EEEEETTT-SEEEEEE-STTEEEEEE-TT.SSEEEEEETTSEEEEEESSSSSEEEEEE CS
  Cytochrom_D1  17 valldgdskeilavletgyalHisrvfasdgRyvyvigRDgkvtliDLwakeivaevk 74 
                   +++ d  +k+ +++ +++        f++dgR+v   g Dg v+l DL a + v+e  
    KOO21305.1 121 LKIWDIRRKSCIQTYKGHTRGVRQIAFSPDGRWVVSGGDDGVVKLWDLTAGRLVHEFA 178
                   56666666666777776666666778************************99998865 PP

>> Frtz  WD repeat-containing and planar cell polarity effector protein Fritz
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.9   0.0   0.00042      0.84     260     329 ..      56     127 ..      48     135 .. 0.82
   2 ?   -2.1   0.0      0.43   8.5e+02     264     328 ..     144     210 ..     140     211 .. 0.74

  Alignments for each domain:
  == domain 1  score: 7.9 bits;  conditional E-value: 0.00042
        Frtz 260 aqvislafnpdedkLllGceDssviLydeer.kitk.lvkaevvPsliswhpdsaillvasergelqifDla 329
                 + v +++f+++e  ++ G+  +++ L+d e+ k+++ l+        ++whp +  +  +s  ++l+i+D+ 
  KOO21305.1  56 SSVECVTFDSNESTVIAGSAGGTLKLWDLEQaKVARtLTGHRSNCISVQWHPYGEFFASGSVDTNLKIWDIR 127
                 6788999*********************76416655145666677789**********************95 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 0.43
        Frtz 264 slafnpdedkLllGceDssviLydeerk..itklvkaevvPsliswhpdsaillvasergelqifDl 328
                   af+pd   ++ G  D+ v L+d + +  + +++      s +++hp + ++  as    l+++Dl
  KOO21305.1 144 QIAFSPDGRWVVSGGDDGVVKLWDLTAGrlVHEFAPHSAPISGLAMHPTEFLMASASVDRTLRLWDL 210
                 6799999999999*********998654114445544444456888999988888888888888886 PP

>> HEAT  HEAT repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.5   0.0      0.49   9.7e+02      10      28 ..     370     388 ..     367     390 .. 0.78
   2 ?    7.9   0.1    0.0021       4.3       1      28 [.     557     584 ..     557     587 .. 0.93
   3 ?   -3.2   0.1       7.5   1.5e+04       9      21 ..     617     629 ..     617     630 .. 0.82

  Alignments for each domain:
  == domain 1  score: 0.5 bits;  conditional E-value: 0.49
                 T-SSHHHHHHHHHHHHHHH CS
        HEAT  10 sDpspeVReaAakaLgala 28 
                   p+  VR+  a++ ++la
  KOO21305.1 370 GNPDEAVRQQIAQCRAQLA 388
                 67999*******9955555 PP

  == domain 2  score: 7.9 bits;  conditional E-value: 0.0021
                 HHHHHHHHHT-SSHHHHHHHHHHHHHHH CS
        HEAT   1 llPlllkllsDpspeVReaAakaLgala 28 
                 llPll++ll ++  +V  +A +a+ +l+
  KOO21305.1 557 LLPLLMSLLDSTYEDVVLTAMRAVSHLS 584
                 89*********************99885 PP

  == domain 3  score: -3.2 bits;  conditional E-value: 7.5
                 HT-SSHHHHHHHH CS
        HEAT   9 lsDpspeVReaAa 21 
                 l+ ++ ++R+ Aa
  KOO21305.1 617 LNAEARRQRCQAA 629
                 67888899**998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (667 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       673  (0.037537); expected 358.6 (0.02)
Passed bias filter:                      480  (0.0267723); expected 358.6 (0.02)
Passed Vit filter:                        59  (0.00329076); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.69u 0.28s 00:00:00.97 Elapsed: 00:00:00.45
# Mc/sec: 4458.92
//
Query:       KOO21306.1  [L=131]
Description: hypothetical protein Ctob_000149 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.18   12.5   9.3       0.25   12.0   3.7    2.2  2  SlyX      SlyX


Domain annotation for each model (and alignments):
>> SlyX  SlyX
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   3.7   1.4e-05      0.25      31      65 ..      10      44 ..       3      45 .. 0.87
   2 ?    3.7   0.3    0.0055        99      34      57 ..      61      84 ..      58      89 .. 0.80

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 1.4e-05
                HHHHHHHHHHHHHHHT-XXXXXXXXXXXXXXXXXX CS
        SlyX 31 qqidrlqrqlrllaerlkeleessgaseaeeepPP 65
                + +++ +rq+++ + r ++lee+++ase+e e+PP
  KOO21306.1 10 RAMQEERRQMAEAEARQRALEEQAAASESESERPP 44
                667888999999999************99888887 PP

  == domain 2  score: 3.7 bits;  conditional E-value: 0.0055
                HHHHHHHHHHHHT-XXXXXXXXXX CS
        SlyX 34 drlqrqlrllaerlkeleessgas 57
                d+l+rq +ll  +l+++++s +++
  KOO21306.1 61 DALKRQQQLLLLQLAKRQTSRSGG 84
                899***********9999887654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (131 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1664  (0.0928105); expected 358.6 (0.02)
Passed bias filter:                      836  (0.0466284); expected 358.6 (0.02)
Passed Vit filter:                        85  (0.00474092); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.25s 00:00:00.68 Elapsed: 00:00:00.39
# Mc/sec: 999.36
//
Query:       KOO21307.1  [L=296]
Description: hypothetical protein Ctob_000146 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    0.00034   20.2   0.0     0.0093   15.5   0.0    2.1  2  Porin_3   Eukaryotic porin


Domain annotation for each model (and alignments):
>> Porin_3  Eukaryotic porin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    2.8   0.0    0.0038        68     213     245 ..      88     119 ..      63     139 .. 0.80
   2 !   15.5   0.0   5.2e-07    0.0093     205     270 .]     226     289 ..     205     289 .. 0.86

  Alignments for each domain:
  == domain 1  score: 2.8 bits;  conditional E-value: 0.0038
                 EEEEEEEEEEEECTCEEEEEEEECTTEEEEEEE CS
     Porin_3 213 estttlGakydldksttvkakidsngkvgllle 245
                  + +++G++y ++   ++ka + sng + +++e
  KOO21307.1  88 HTHAQVGTQYFTPFG-ALKAELMSNGMLQASFE 119
                 456779999999999.99999999999988887 PP

  == domain 2  score: 15.5 bits;  conditional E-value: 5.2e-07
                 EEEETTEEEEEEEEEEEEEECTCEEEEEEEECTTEEEEEEEEEECTTEEEEEEEEEECCCTEEEEE CS
     Porin_3 205 ltlnassqestttlGakydldksttvkakidsngkvgllleqkLrpgvtltlsaelDhkknahkfG 270
                 l++  +++ + +t+G   ++ + t++++k +++g+++l+le    +++t+ l +e++++  + kfG
  KOO21307.1 226 LEWEPKTE-GVMTVGGTRQVTDHTRLRGKWSTTGVLALALEVA-GEKSTVQLTTEVNTVSGEPKFG 289
                 55666554.667777777777777*******************.*********************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (296 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       306  (0.0170673); expected 358.6 (0.02)
Passed bias filter:                      229  (0.0127726); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.23s 00:00:00.67 Elapsed: 00:00:00.40
# Mc/sec: 2242.94
//
Query:       KOO21308.1  [L=436]
Description: pyrazinamidase nicotinamidase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.2e-21   75.9   0.1    5.6e-13   49.4   0.0    2.2  2  Isochorismatase  Isochorismatase family


Domain annotation for each model (and alignments):
>> Isochorismatase  Isochorismatase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.4   0.0   3.1e-17   5.6e-13       2      88 ..      71     165 ..      70     184 .. 0.95
   2 !   24.4   0.1   1.6e-09   2.8e-05     110     153 ..     275     317 ..     262     349 .. 0.85

  Alignments for each domain:
  == domain 1  score: 49.4 bits;  conditional E-value: 3.1e-17
  Isochorismatase   2 alvviDmqndfv........eegvkeseeisavveninkllkaarkagipviftrdvheleevkgdlderkaaphfkpgttgaelvpelapleg 87 
                      alvviDmq dfv        ++g+  ++e + +v+ i  l++aa + g  +++trd+h++++ +  ++ ++++ph+++gt gael+p +a   +
       KOO21308.1  71 ALVVIDMQADFVpcdpttnpHGGRFGVPEGDLIVPTICSLIAAATACGATIVATRDYHPYDHASFNTEGGPFPPHCVQGTAGAELLPPIALALS 164
                      9**************************************************************************************9987665 PP

  Isochorismatase  88 d 88 
                      d
       KOO21308.1 165 D 165
                      5 PP

  == domain 2  score: 24.4 bits;  conditional E-value: 1.6e-09
  Isochorismatase 110 elgiktivlaGiatdvCVeatardaldlGy.evvvvsDAvaalsp 153
                          k++ ++G+a d+CV+ t++ ++  G+ ev++v D+  a + 
       KOO21308.1 275 D--KKRLFVCGLALDFCVLDTCINGVAAGFaEVYLVLDCARAAHL 317
                      3..4789***********************9********998874 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (436 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       283  (0.0157845); expected 358.6 (0.02)
Passed bias filter:                      231  (0.0128842); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.26s 00:00:00.72 Elapsed: 00:00:00.42
# Mc/sec: 3086.88
//
Query:       KOO21309.1  [L=554]
Description: RNA exonuclease [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    0.00082   20.0   0.0     0.0017   19.0   0.0    1.6  1  RNase_T   Exonuclease
  ------ inclusion threshold ------
      0.078   13.3   0.0        3.1    8.2   0.0    3.0  2  DIMCO_N   Dinitrogenase iron-molybdenum cofactor, N-terminal


Domain annotation for each model (and alignments):
>> RNase_T  Exonuclease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.0   0.0   1.8e-07    0.0017       2      95 ..     247     343 ..     246     420 .. 0.83

  Alignments for each domain:
  == domain 1  score: 19.0 bits;  conditional E-value: 1.8e-07
                 EEEEEESSSTT.....CTTS-EEEEEEEEEETTCCEEEEEEEEEEEHSSHCSSSHHHHHHHHHCHHHHHTCEBHHH.HHHHHHHHHHHH.TCCCETTTC CS
     RNase_T   2 viDlEttglda.....kekdeiieiaaisidggeneigetfhfyvkptelakltdecteftgitqemldeapsfke.vleefkellrkl.allvahnaa 93 
                 ++D+E++ +       +  + + ++a++ ++ +   +    + +v p+++  + d+ t+++git++ l +a ++ e v  ++++l+  + +++v+h  +
  KOO21309.1 247 AFDCEMVLVRGprmadGGWPLMKQLARVAVVDES--GRTLLDELVIPERP--VVDYKTQYSGITPAILATATKTLEeVRAAIRQLMAGGdTVMVGHSLE 341
                 689999999988888855778889********99..78889*********..***************99998777657777777666433777777644 PP

                 EE CS
     RNase_T  94 fd 95 
                  d
  KOO21309.1 342 SD 343
                 44 PP

>> DIMCO_N  Dinitrogenase iron-molybdenum cofactor, N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.2   0.0   0.00035       3.1      23      70 ..     361     408 ..     357     424 .. 0.81
   2 ?    1.1   0.0     0.057   5.1e+02      57      83 ..     445     470 ..     439     473 .. 0.73

  Alignments for each domain:
  == domain 1  score: 8.2 bits;  conditional E-value: 0.00035
     DIMCO_N  23 qLlevLqerlgeplteekLakltvtdLktalasadgeeeeldigvese 70 
                 +Ll  L   l  p+ +++L++ltv++Lk  +++  +e   +++g++++
  KOO21309.1 361 ALLYPLRCNLHGPPAKAALRNLTVQHLKREIQQPRMEPGVMNVGMGHS 408
                 577778889999*****************9998888887777776654 PP

  == domain 2  score: 1.1 bits;  conditional E-value: 0.057
     DIMCO_N  57 dgeeeeldigveseaLkeAvrlLkGeg 83 
                 d+ ++   i+ +++a ++Av++L+G +
  KOO21309.1 445 DMVNQM-VIADDEAAVQAAVHALSGTQ 470
                 555543.34677999**********86 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (554 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       322  (0.0179597); expected 358.6 (0.02)
Passed bias filter:                      265  (0.0147805); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.52u 0.24s 00:00:00.76 Elapsed: 00:00:00.41
# Mc/sec: 4061.17
//
Query:       KOO21310.1  [L=428]
Description: hypothetical protein Ctob_000137 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    2.4e-47  161.5   0.0    2.8e-47  161.3   0.0    1.1  1  Pkinase      Protein kinase domain
      5e-22   78.4   0.1    7.1e-22   77.9   0.1    1.1  1  Pkinase_Tyr  Protein tyrosine kinase
    0.00025   20.7   0.0    0.00047   19.8   0.0    1.4  1  RIO1         RIO1 family
     0.0076   15.9   0.0          1    9.0   0.0    2.3  2  FTA2         Kinetochore Sim4 complex subunit FTA2
  ------ inclusion threshold ------
      0.011   15.1   0.0      0.016   14.6   0.0    1.3  1  Kdo          Lipopolysaccharide kinase (Kdo/WaaP) family
      0.057   13.3   0.0       0.12   12.3   0.0    1.4  1  APH          Phosphotransferase enzyme family


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  161.3   0.0   9.5e-51   2.8e-47       1     263 [.      70     357 ..      70     358 .. 0.85

  Alignments for each domain:
  == domain 1  score: 161.3 bits;  conditional E-value: 9.5e-51
                 EEEEEEEEEESSEEEEEEEETTTTEEEEEEEEECHCHCHHHH...HHHHHHHHHHHHHS.....CTTB--EEEEEEE..SSEEEEEEE--TTEBHHHHH CS
     Pkinase   1 yekleklGeGsfGkVykaveketgkivAvKkikkekakkkke...kkvlrEikilkklk.....hpnivrlyevfee..kdelylvleyveggeladll 89 
                 y++le lG+G++++V+k++ +  ++  A+Kk++ e ++++ +   ++v++Ei ++ ++k      + i++l+++  +  ++ +y+v+e+ e + ++ +l
  KOO21310.1  70 YKVLELLGKGGTSQVFKVL-SPLNEVLALKKVALEADSEEANglaEAVQNEIDLMMRFKsvpeaTRCIIELVDAEVNlaERVVYMVMECGEID-FKGIL 166
                 78899**************.799***************99999*9*************986666677999998887787999********987.88888 PP

                 H.......HHSS.--HHHHHHHHHHHHHHHHHHHHTTEE-SS-SGGGEEEETTTEEEE-SGTTSEESSSSCS......BCTTTSCGGGS-HHHH..... CS
     Pkinase  90 e.......rkgs.lseeeakkiakqilegleylHskgiiHrDlKpeNiLidekgelKitDFGlakelesssk......ltsfvgtseYlAPEvl..... 169
                 +       +kg  l+e+ +  +++q+l++++ +H++++iH DlKp N+L+  kg lK++DFG+ak ++++++       ++ vgt +Y++PE +     
  KOO21310.1 167 QrdqeerqAKGLeLNETFVCGYWEQMLSAVDVMHKARVIHGDLKPMNFLCV-KGALKLIDFGIAKSMTNDNPdvtkieRENTVGTLNYMSPETIvgqda 264
                 88878876333348888999*******************************.******************999****99****************9988 PP

                 .....TTSCB..SHHHHHHHHHHHHHHHHHSS-STTTSSHHHHHHHHHHTHHHHHHHCT.SHH...HHHTTS.-HHHHHHHHHHT-SSGCCSTTHHHHH CS
     Pkinase 170 .....keney..skkvDvWslGvilyelltgkppfsgekgkekvekeldqlekilkilg.etkeklpeasei.seeakdllkkllkkdpkkRltaeell 259
                      k + +  ++++DvWslG+ily++++g ppf++ k+       l++++    i +  ++ ++p  ++   + +++++k +l+++p+ R+  +ell
  KOO21310.1 265 qdehgK-SVFtqGRASDVWSLGCILYQMVYGAPPFAHVKN------YLRKMQ---AITDeRVEIQFPPLRTSkFPYLLEVMKACLQRKPECRPKLSELL 353
                 766422.22235889*********************4444......444422...22222455666655554268999********************* PP

                 TSGG CS
     Pkinase 260 qhpy 263
                 qhp 
  KOO21310.1 354 QHPL 357
                 **97 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   77.9   0.1   2.4e-25   7.1e-22       4     257 ..      73     354 ..      70     355 .. 0.76

  Alignments for each domain:
  == domain 1  score: 77.9 bits;  conditional E-value: 2.4e-25
                  EEEEEEESSEEEEEEEEETTTTSSEEEEEEEEESTTSSHHHHHHHHHHHHHHHTS.-BTT....B--EEEEEE..SSSSEEEEEE--TTEBHHHHHHH CS
  Pkinase_Tyr   4 gkklGeGafGkVvegtlkgekekkevkVavKtlkeeateeekeelleeakimkkl.khpn....ivkllgvct..keepllivteyvkgGdLlkfLrk 94 
                   + lG+G  ++V++     ++  +  kVa+   +eea+    e++ +e+++m+++ + p+    i++l+ + +   e+ +++v+e   + d++  L++
   KOO21310.1  73 LELLGKGGTSQVFKVLSPLNEVLALKKVALEADSEEANGL-AEAVQNEIDLMMRFkSVPEatrcIIELVDAEVnlAERVVYMVMEC-GEIDFKGILQR 168
                  6789999999999988885566666666666665555554.899999******996666523337777777665455668888884.44577888888 PP

                  T......CTTTSBHHHHHHHHHHHHHHHHHHHHTTEEEST-SGGGEEEEETTEEEE-STTTHEETTTSSEE...EETTSSTSGGGGS-HHHHHHSE.. CS
  Pkinase_Tyr  95 k......ekekltlkdllsfalqvAkGmeyLeskklvHrdlaarNvLlsenkvvkisDfGLardiekddey...vkkeeaklpvkWmapEslkekk.. 181
                  +      +  +l+ + ++ +  q+ ++++ +++ +++H dl   N L   +   k+ DfG+a+++++d+      ++e++   +++m+pE++  +   
   KOO21310.1 169 DqeerqaKGLELNETFVCGYWEQMLSAVDVMHKARVIHGDLKPMNFLCV-KGALKLIDFGIAKSMTNDNPDvtkIERENTVGTLNYMSPETIVGQDaq 265
                  7666644444555555778999***********************9988.7899***********87765534477889999**********887778 PP

                  .......EEH..HHHHHHHHHHHHHHHTTSSGTTTTSHHH.HHHHHH.HTTEES-BBTTSBHH...HHHHHHHHT-SSGGGS--HHHHHH CS
  Pkinase_Tyr 182 .......fts..ksDvWsfGvllwEiftlgespypglkne.evlekl.kegkrlekpekcpee...lyelmkkcweedpeeRptfselve 257
                         ft+  +sDvWs G +l+ ++  g+ p++++kn  + ++++ +e+ +++ p   +++   l e+mk c++++pe Rp++sel++
   KOO21310.1 266 dehgksvFTQgrASDVWSLGCILYQMVY-GAPPFAHVKNYlRKMQAItDERVEIQFPPLRTSKfpyLLEVMKACLQRKPECRPKLSELLQ 354
                  8999999654339************998.********776245555535555677776555442227899****************9976 PP

>> RIO1  RIO1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.8   0.0   1.6e-07   0.00047     109     158 ..     187     237 ..     164     245 .. 0.74

  Alignments for each domain:
  == domain 1  score: 19.8 bits;  conditional E-value: 1.6e-07
                 HHHHHHHHHHHHHHHTSTEEESS-STTSEEEETTEEEE--GT..TEEETTST CS
        RIO1 109 elyeevleemrklykeaglvHaDLSeyNvlvdedkvviIDvs..Qaveldhp 158
                  + e++l+++ ++ ++a+++H+DL   N l+ ++ + +ID++   +++ d+p
  KOO21310.1 187 GYWEQMLSAVDVM-HKARVIHGDLKPMNFLCVKGALKLIDFGiaKSMTNDNP 237
                 4556777766655.5*************************962255555555 PP

>> FTA2  Kinetochore Sim4 complex subunit FTA2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.8   0.0    0.0064        19      24      51 ..      70      98 ..      61     133 .. 0.75
   2 !    9.0   0.0   0.00034         1     171     212 ..     182     227 ..     153     230 .. 0.82

  Alignments for each domain:
  == domain 1  score: 4.8 bits;  conditional E-value: 0.0064
        FTA2 24 iefleyLgkglhsiVlkvki.rgkeYALK 51
                ++ le+Lgkg +s+V+kv    +++ ALK
  KOO21310.1 70 YKVLELLGKGGTSQVFKVLSpLNEVLALK 98
                789**************965145677877 PP

  == domain 2  score: 9.0 bits;  conditional E-value: 0.00034
        FTA2 171 eelevsqlpkllrdlkklhklgIvvrDlkeenyi..dg..kLvDls 212
                 e +   + +++l+ ++ +hk+ +++ Dlk+ n++  +g  kL+D++
  KOO21310.1 182 ETFVCGYWEQMLSAVDVMHKARVIHGDLKPMNFLcvKGalKLIDFG 227
                 556667789***********************97443333678887 PP

>> Kdo  Lipopolysaccharide kinase (Kdo/WaaP) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.6   0.0   5.3e-06     0.016     121     170 ..     186     230 ..     117     249 .. 0.86

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 5.3e-06
         Kdo 121 rallkavgrliaklhragvnHadlyaknillqqeeeeeaeiwliDldkar 170
                    +++   ++  +h+a v H+dl + n+l  +++     + liD+  a+
  KOO21310.1 186 CGYWEQMLSAVDVMHKARVIHGDLKPMNFLCVKGA-----LKLIDFGIAK 230
                 5579999999********************99997.....9999996554 PP

>> APH  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   3.9e-05      0.12     151     197 ..     176     230 ..     156     233 .. 0.70

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 3.9e-05
                 H...........HHHHHHHH--SSS-EEEE-SS-SGGGEEEC..TTEEEEE---TT-E CS
         APH 151 q...........vlaalaallpgelptvllHgDlhpgNllvdpddgrvtGviDfedag 197
                              +++++  ++   +++++HgDl+p N+l    +g +  +iDf+ a+
  KOO21310.1 176 KglelnetfvcgYWEQMLSAVDVMHKARVIHGDLKPMNFLCV--KGAL-KLIDFGIAK 230
                 133333444444677777777777899***************..5665.59***9876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (428 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       566  (0.031569); expected 358.6 (0.02)
Passed bias filter:                      475  (0.0264934); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.52u 0.29s 00:00:00.81 Elapsed: 00:00:00.45
# Mc/sec: 2878.58
//
Query:       KOO21311.1  [L=845]
Description: hypothetical protein Ctob_000138 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    6.2e-46  156.2   0.0    1.9e-45  154.6   0.0    1.9  1  DEAD_2        DEAD_2
    7.9e-41  140.1   0.0    1.7e-40  138.9   0.0    1.6  1  Helicase_C_2  Helicase C-terminal domain
    9.8e-29  100.4   2.6    2.5e-23   82.7   1.0    3.4  2  HBB           Helical and beta-bridge domain
    8.5e-09   35.6   0.0      6e-06   26.4   0.0    2.6  3  ResIII        Type III restriction enzyme, res subunit
    0.00082   18.2   0.0        0.2   10.3   0.0    2.3  2  SNF2_N        SNF2 family N-terminal domain
  ------ inclusion threshold ------
      0.023   14.5   0.2      0.066   13.0   0.0    1.7  2  AAA_11        AAA domain
       0.11   11.7   0.0         10    5.2   0.0    2.3  2  DUF2075       Uncharacterized conserved protein (DUF2075)


Domain annotation for each model (and alignments):
>> DEAD_2  DEAD_2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  154.6   0.0   7.5e-49   1.9e-45       1     172 [.      71     313 ..      71     317 .. 0.96

  Alignments for each domain:
  == domain 1  score: 154.6 bits;  conditional E-value: 7.5e-49
                 EEESSHHHHHHHHHHHHHHHHHCHH......HS---EEEE--CCCC-SCHHCCCHHCCCCHHHHHHHHHCCHHCCH....................... CS
      DEAD_2   1 ycsRThsqleqvvkelkklesykkk......kekvkvviLgSRknlCineevkkekkekavneaCkelkkkkaeek....................... 70 
                 yc+RT  ++e++++elk le+ + +        ++++v+L+SR+nlC++e+v++++++++v++ C++l++ +++e+                       
  KOO21311.1  71 YCTRTIPEMEKCLEELKTLERHRDEcfgsarPRRLLAVGLSSRRNLCVHERVSQHTEKSQVDQECRQLTAPWVRERagvrslgpdgrycasggrqqggi 169
                 9******************999986777777899***************************************999*********************** PP

                 ...........................................TTTTTT-SCCCCHHHHHHHHHHC---CHHHHHHHHHCT--HHHHHHHHHCCTSEEE CS
      DEAD_2  71 ...........................................eekCsffenleelkklkkllleevvdiedlvelgeklklCPYylsrelledadiii 126
                                                             e C++fe+le  + +  ll ++v+++e+l+e+g+++++CPY+l+r+++ +ad+++
  KOO21311.1 170 ssagehpgaagssgggedegtsghagrcsaaaasssspigdsgIELCEYFEALE-RQGTDALLAAGVYTLEELKEFGKSKGWCPYFLARHVIAFADVVV 267
                 *****************************************99999*****995.555689************************************** PP

                 EEHHHHTSCCCHHHHHT..GCGCEEEECTCCCHHHHHHHCC-EEEE CS
      DEAD_2 127 lpYqyLldekireslkgislknsivilDEAhNiedvceeaasveis 172
                 + YqyLld+ki + +++  +++++v++DEAhNi+++c+e++s++++
  KOO21311.1 268 YNYQYLLDPKISQLVSKSMQRECVVVFDEAHNIDNICIEVMSINFR 313
                 ****************8889**********************9986 PP

>> Helicase_C_2  Helicase C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  138.9   0.0   6.8e-44   1.7e-40       1     170 [.     585     760 ..     585     761 .. 0.91

  Alignments for each domain:
  == domain 1  score: 138.9 bits;  conditional E-value: 6.8e-44
  Helicase_C_2   1 llellevvpggvlvffpSyklleevverlkeeleskki....eifvee.keesrekvleeykek..kkkgaillavcrGklsEGidfsddllravii 90 
                   lle+++vvp+g+++ff+Sy++++evv+++++++  k +     +f e+ +  +++  le++k++   ++ga++l+v+rGk+ EG+df  +++rav++
    KOO21311.1 585 LLECARVVPDGIVAFFTSYSYMQEVVREWHSTGLLKTVlqhkLVFIETtDVLETTLALENFKKAcdCGRGAVFLSVARGKVAEGVDFDRHYGRAVLL 681
                   57899**************************995554444447777752444888889*****556******************************* PP

  Helicase_C_2  91 vglPfpnpkdpeveakreyldekgkknsgkewylpealravnQaiGRliRhkdDygaivllDeRfakeeireklpkwlre 170
                    g+Pf+ +    ++a+ eyl+++ +  +  ++ + +a+r+  Q++GR+iR k Dyg++v+ D+R++k + r+klp w+++
    KOO21311.1 682 LGVPFQYTLGRVLRARLEYLRDTCG-INEADFLTFDAIRQAAQCAGRVIRGKSDYGIVVFADSRYSKHDKRSKLPMWIQQ 760
                   *************************.999************************************************986 PP

>> HBB  Helical and beta-bridge domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   82.7   1.0   9.8e-27   2.5e-23       2     189 ..     331     473 ..     330     474 .. 0.93
   2 !   13.0   0.0   2.4e-05     0.062     119     171 ..     492     546 ..     488     556 .. 0.80

  Alignments for each domain:
  == domain 1  score: 82.7 bits;  conditional E-value: 9.8e-27
                 CHCHCCCCHHCCCCCCCHHHHHHHHHCCCCHHHHSTTTECCHCHHHHHCHCHHHCHHHHHHHHHHHHHHHHHHHCCHHCCCTCC-SHHHHHHHHHHHHH CS
         HBB   2 ikeaketdepklqdeysrLvegLreaeeereeeyvleeepilpdeileeavpglirsaehflsllkrlveygkarreekieksesPrsflsrlaeflla 100
                 i+++k+td+ +l++ey+rLv gL++      + ++ ++ p+lpdeil++avpg+ r+a+ f++ l++lv y+ +r++++++++esP++fl++l      
  KOO21311.1 331 IERMKQTDASRLREEYERLVHGLAQSGTLPINAELASN-PVLPDEILTQAVPGNLRRADMFVKYLRKLVHYLTQRLQVNEVVQESPTAFLHKLD----- 423
                 799*************************8888888888.*******************************************************..... PP

                 HHTS.TTTEEEEEE.STT.EECCCCS-TCCHHHHHHHCHCCCCCCTS-SSHHHHHHHHT....EEE.S..S.GGHCCCCCCCCCSHTCC CS
         HBB 101 wlssdeedYvrlvskeegesLeavcldPskalrflkerlssllmsgtltpleeysdiiGleaklkkfpspfpkEnlivlfatdVsTkyk 189
                                +e+        d sk ++f+++rl+sll+++++t+++++s++                  li+ fat+V+T +k
  KOO21311.1 424 ---------------NEE-------EDFSKSMKFVSDRLRSLLRTLEVTDVQDFSPL-----------------VLIADFATLVATFQK 473
                 ...............211.......2558****************************.................9*********99766 PP

  == domain 2  score: 13.0 bits;  conditional E-value: 2.4e-05
                 .EECCCCS-TCCHHHHHHHC.HCCCCCCTS-SSHHHHHHHHT.....EEE.S..S CS
         HBB 119 esLeavcldPskalrflker.lssllmsgtltpleeysdiiGle.aklkkfpspf 171
                 +  +++c d s a+++  er +s++++sgtl+pl+ y++i+ ++  +++ f   f
  KOO21311.1 492 PLFQLCCNDASIAIKPAFERfQSVVITSGTLSPLDMYKKILSVQpVVVQSFQMSF 546
                 667888888777777766652788899**************99977888887666 PP

>> ResIII  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.4   0.0   2.3e-09     6e-06       5      58 ..      18      70 ..      15     124 .. 0.83
   2 !    6.3   0.0    0.0035       8.9     105     145 ..     264     301 ..     238     333 .. 0.80
   3 ?   -3.1   0.0       2.6   6.6e+03      56      76 ..     625     647 ..     601     653 .. 0.73

  Alignments for each domain:
  == domain 1  score: 26.4 bits;  conditional E-value: 2.3e-09
                -HHHHHHHHHHT......TTSEEEEEESTTSTHHHHHHHHHHHH-S......-EE CS
      ResIII  5 reyQeeaienlleklkskrdkrglikmaTGtGKTlvaaklierllkkgkee.kfl 58
                ++ Q + + +l+ +l+   + + +++m+TGtGKT+++++li +++++++e  k +
  KOO21311.1 18 YPEQYQYMLELKRSLD--AKGHSMLEMPTGTGKTITLLSLITSYQRAHPEMgKLI 70
                6789999999999995..8889***********************9988764444 PP

  == domain 2  score: 6.3 bits;  conditional E-value: 0.0035
                 SEEEEEHHHHHHTH........HHHTTT-SEEEEETGGGTT CS
      ResIII 105 kilvttiqsldadseeeeeeseellrdrfdviiiDEaHrlg 145
                 +++v ++q l  ++    ++  +++ +r+ v+++DEaH++ 
  KOO21311.1 264 DVVVYNYQYLLDPK---ISQLVSKSMQRECVVVFDEAHNID 301
                 67888888888888...3344444555566********975 PP

  == domain 3  score: -3.1 bits;  conditional E-value: 2.6
                 -EEEEESSHHHHHHHH..HHGGG CS
      ResIII  56 kflflvprkslleqtl..eefkk 76 
                 + l+++ ++++le tl  e+fkk
  KOO21311.1 625 HKLVFIETTDVLETTLalENFKK 647
                 66888888888888887777776 PP

>> SNF2_N  SNF2 family N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.4   0.0    0.0025       6.4      64      80 ..      44      60 ..      35     141 .. 0.76
   2 !   10.3   0.0   7.9e-05       0.2     142     191 ..     255     302 ..     235     318 .. 0.80

  Alignments for each domain:
  == domain 1  score: 5.4 bits;  conditional E-value: 0.0025
                TTS--HHHHHHHHH... CS
                xxxxxxxxxxxxxxxxx RF
      SNF2_N 64 mGLGKTvqvlalilaqr 80
                +G GKT+++l+li+  +
  KOO21311.1 44 TGTGKTITLLSLITSYQ 60
                799***********544 PP

  == domain 2  score: 10.3 bits;  conditional E-value: 7.9e-05
                 ----------EEEE-HHHHHHHT......TTS-S-S-SE...EEES-GGGT-- CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxx RF
      SNF2_N 142 vapklladydvvittYdvlsreaelqkkrsvlkqvewkr...vvlDEghtlkn 191
                 +a+++ a +dvv+ +Y++l   +     +s+l++++++r   vv DE+h++ n
  KOO21311.1 255 LARHVIAFADVVVYNYQYLLDPK-----ISQLVSKSMQRecvVVFDEAHNIDN 302
                 67899999************555.....66666665443333778*****988 PP

>> AAA_11  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.0   2.6e-05     0.066      11     119 ..      29     137 ..      20     167 .. 0.83
   2 ?   -1.7   0.1      0.81   2.1e+03      79      98 ..     313     335 ..     275     450 .. 0.53

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 2.6e-05
      AAA_11  11 ksalseseitliqGPPGtgKTktivellsqllsrrkseeeksakpriLvCapSNaAvDellerllr..glldse.gekykpkivRvgnee...erisea 103
                 k+ l  ++ ++++ P GtgKT t+++l+ +       ++++ +  ++ +C+ +   + + le l +  +  d+  g+ +  +++ vg ++     ++e+
  KOO21311.1  29 KRSLDAKGHSMLEMPTGTGKTITLLSLITSY------QRAHPEMGKLIYCTRTIPEMEKCLEELKTleRHRDECfGSARPRRLLAVGLSSrrnLCVHER 121
                 6777778889*********************......46789999999999999999999999999855555555666666889999999888678999 PP

      AAA_11 104 vksvsleekvekrlek 119
                 v++++ +++v++++++
  KOO21311.1 122 VSQHTEKSQVDQECRQ 137
                 9999999999988765 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 0.81
      AAA_11  79 ldsegekykpkivRvgnee...e 98 
                    + e  + +i R+ +e    +
  KOO21311.1 313 RLPTLEAASKNITRISSEIermK 335
                 44444444444444444432111 PP

>> DUF2075  Uncharacterized conserved protein (DUF2075)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.0   0.0    0.0093        24      10      55 ..      44      90 ..      43     104 .. 0.80
   2 ?    5.2   0.0     0.004        10      83     100 ..     283     300 ..     266     328 .. 0.87

  Alignments for each domain:
  == domain 1  score: 4.0 bits;  conditional E-value: 0.0093
     DUF2075 10 aGtGKtvvllnllael.eddeeertavylsvNhplvlvlrealakke 55
                +GtGKt+ ll+l++ + + + e  + +y ++  p++++  e+l+  e
  KOO21311.1 44 TGTGKTITLLSLITSYqRAHPEMGKLIYCTRTIPEMEKCLEELKTLE 90
                5*************996667778888999999999999988886555 PP

  == domain 2  score: 5.2 bits;  conditional E-value: 0.004
     DUF2075  83 kkeepkedvvivDEAhrl 100
                 +k+ ++e+vv++DEAh +
  KOO21311.1 283 SKSMQRECVVVFDEAHNI 300
                 578899**********76 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (845 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       852  (0.0475208); expected 358.6 (0.02)
Passed bias filter:                      759  (0.0423336); expected 358.6 (0.02)
Passed Vit filter:                        65  (0.00362541); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.80u 0.30s 00:00:01.10 Elapsed: 00:00:00.47
# Mc/sec: 5366.48
//
Query:       KOO21312.1  [L=262]
Description: phosphomannomutase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.1e-94  316.4   0.0    1.2e-94  316.2   0.0    1.0  1  PMM          Eukaryotic phosphomannomutase
    6.8e-06   26.0   0.0    1.5e-05   24.9   0.0    1.5  1  Hydrolase_3  haloacid dehalogenase-like hydrolase


Domain annotation for each model (and alignments):
>> PMM  Eukaryotic phosphomannomutase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  316.2   0.0   1.4e-98   1.2e-94       3     219 ..      32     248 ..      30     250 .. 0.96

  Alignments for each domain:
  == domain 1  score: 316.2 bits;  conditional E-value: 1.4e-98
                 HHHHHHCTTSEEEEE-SS-HHHHHHHHS.TTHHHH-SEEEEGGGTEEEETTEEEEE--HHHHH-HHHHHHHHHHHHHHHHCS--S---S-SEEEESSEE CS
         PMM   3 eflqklrkkveigvvgGsdlekikeqlagdevldefdyvfsenGlvaykkgkelasqsiiealgeeklkklinfvlryladldlPvkrGtfiefrngll 101
                 +fl++lr+k++igvvgGsdl+k+keql+  +    fd++f+enGl a+k+g  + + s+ ++lge+ lk+lin+vl yl+ ld+PvkrGtfiefr+g+l
  KOO21312.1  32 AFLAELRSKIAIGVVGGSDLTKQKEQLG--DSPALFDWCFAENGLLAHKDGSVIGQMSLVKHLGEDSLKRLINWVLAYLSTLDIPVKRGTFIEFRQGML 128
                 6899***********************7..44567**************************************************************** PP

                 EE-SS-TTSSHHHHHHHHHHHHHHTHHHHHHHHHHHHTTTSSEEEEEETTTEEEEEETT-SGGGGGGGCTTST-SEEEEEESS-STTSTTHHHHHSTTC CS
         PMM 102 nvsPiGrnasqeernefeeydkkekireklvealkeefadlgltfsiGGqisfdvfPkgWdktyclqhvekdsfdeihffGdktaeGGndyeiyadprt 200
                 n+sPiGrn+++eern+fe++d  +kire++v+++++ef+dl+lt+siGGqisfdvfP+gWdkt+cl+++ +  fdeihffGdkt eGGnd+ei+++prt
  KOO21312.1 129 NISPIGRNCNREERNDFEKFDLANKIRETMVAKMRTEFKDLNLTYSIGGQISFDVFPQGWDKTFCLNYLPEADFDEIHFFGDKTFEGGNDFEIFSHPRT 227
                 *************************************************************************************************** PP

                 EEEE-S..SHHHHHHHHHHHH CS
         PMM 201 ighsvt..spddtvkkleell 219
                  ghs+   +p  t kkl+el+
  KOO21312.1 228 KGHSIDdaNPMTTLKKLSELF 248
                 ****97225778889999887 PP

>> Hydrolase_3  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.9   0.0   1.7e-09   1.5e-05       3     221 ..      13     224 ..      11     246 .. 0.74

  Alignments for each domain:
  == domain 1  score: 24.9 bits;  conditional E-value: 1.7e-09
                  EEIIIIIS-TTS---HHHHHHHHHHHHTTSEEEEE-SS-HHHHHHHHH.HCCCCSEEEEGGGTEEECTTTEEEEE--B-HHHHHHHHHHHHHTTCEEE CS
  Hydrolase_3   3 lDlDGTLlnsdkkisektkeaikklkekgikvviATGRslravlpvle.elgldlpvialNGaliddekgkilykstiskedvkeiikllkennveil 99 
                  +D+DGTL    k +s++t + +++l+   i + +  G  l++ ++ l  +  l   + a NG l  +++g ++ + ++ k   ++ +k l +    ++
   KOO21312.1  13 FDVDGTLTEPRKLVSPETLAFLAELR-SKIAIGVVGGSDLTKQKEQLGdSPALFDWCFAENGLLA-HKDGSVIGQMSLVKHLGEDSLKRLIN--WVLA 106
                  9*************************.67999999998776666555514445589999******.99999998877775555555554444..3333 PP

                  EEESSEEEESTT.THHHHHHHHHCHCTCEEEESHHHHHCHCSESEEEEES-HHHHHHHHHHHHHHCTTTEEEEEESTTEEEEEETT-SHHHHHHHHHH CS
  Hydrolase_3 100 lytedkvyvlnkeksekkkkeeektkkkkeeidseeeledeeiakililkdkekldelekelksklnklltitssskgyleimpkgvsKgtalkklak 197
                  + ++ ++ v++   +  ++++ + + +    + + ee++d+e + +     ++ + +++ e+k+++   lt++  ++ ++++ p+g++K   l++l  
   KOO21312.1 107 YLSTLDIPVKRG--TFIEFRQGMLNISPIGRNCNREERNDFEKFDLANKIRETMVAKMRTEFKDLN---LTYSIGGQISFDVFPQGWDKTFCLNYLP- 198
                  344455555555..2333336666666666666666666666666667778888899999999996...49************************99. PP

                  HCT--GGGEEEEES....SGGGHHHHHH CS
  Hydrolase_3 198 elnisleeviafGD....geNDieMLea 221
                      + +e+  fGD    g ND e +++
   KOO21312.1 199 --EADFDEIHFFGDktfeGGNDFEIFSH 224
                  ..789*********44444699999986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (262 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       419  (0.02337); expected 358.6 (0.02)
Passed bias filter:                      418  (0.0233142); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.42u 0.29s 00:00:00.71 Elapsed: 00:00:00.42
# Mc/sec: 1885.36
//
Query:       KOO21313.1  [L=405]
Description: hypothetical protein Ctob_000154 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.4e-36  123.4  35.3    3.3e-16   59.3   3.6    4.5  4  TPR_12      Tetratricopeptide repeat
    1.3e-32  110.8  37.9    7.4e-09   35.2   0.2    6.5  6  TPR_10      Tetratricopeptide repeat
    4.2e-21   73.8   7.0      0.001   18.8   0.5    6.6  7  TPR_1       Tetratricopeptide repeat
    2.9e-19   67.5  18.2     0.0033   17.4   0.1    6.9  6  TPR_2       Tetratricopeptide repeat
      4e-17   60.9   0.8      0.018   15.2   0.0    6.5  6  TPR_8       Tetratricopeptide repeat
    2.4e-16   58.5  17.9      0.047   13.7   0.3    7.1  6  TPR_7       Tetratricopeptide repeat
    8.6e-11   42.3  51.1     0.0002   21.9  10.0    6.3  4  TPR_16      Tetratricopeptide repeat
    1.9e-08   34.4  42.9      0.086   13.7   0.7    7.1  6  TPR_14      Tetratricopeptide repeat
    8.5e-08   31.8   4.9        0.2   11.3   0.1    6.4  6  TPR_11      TPR repeat
    4.6e-06   27.0  28.2    0.00025   21.5   1.1    5.8  5  TPR_19      Tetratricopeptide repeat
    0.00034   20.8   4.5         13    6.5   0.0    5.0  4  TPR_17      Tetratricopeptide repeat
     0.0021   18.6   9.8         21    6.0   0.1    5.6  5  TPR_6       Tetratricopeptide repeat
     0.0097   15.2   0.2       0.21   10.9   0.1    2.1  2  DUF1442     Protein of unknown function (DUF1442)
  ------ inclusion threshold ------
      0.017   14.3   0.1      0.066   12.4   0.0    1.9  2  2-ph_phosp  2-phosphosulpholactate phosphatase
      0.018   15.1   7.8       0.38   10.8   1.2    3.2  3  DUF3856     Domain of Unknown Function (DUF3856)
      0.032   13.6  20.7      0.069   12.5   1.0    2.5  3  TPR_MalT    MalT-like TPR region
       0.21   12.3   0.0       0.21   12.3   0.0    9.6  7  TPR_4       Tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> TPR_12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.3   3.1   3.7e-10   3.9e-07      16      75 ..      44     103 ..      38     105 .. 0.92
   2 !   21.4   0.3   2.2e-07   0.00023       2      47 ..     112     158 ..     111     161 .. 0.88
   3 !   50.9   7.1   1.3e-16   1.4e-13       3      75 ..     174     246 ..     172     247 .. 0.96
   4 !   59.3   3.6   3.1e-19   3.3e-16       1      75 [.     214     288 ..     214     290 .. 0.96

  Alignments for each domain:
  == domain 1  score: 30.3 bits;  conditional E-value: 3.7e-10
      TPR_12  16 lgrydeAlellekaleia.rrllGpdhpltattlrnLgrlyralgryeeAlelleealaia 75 
                  gry+eA  lle+a++   +r+ G+ + ++at+ ++Lg ++ algr+ eAl+++++ala++
  KOO21313.1  44 GGRYAEAVPLLERAIRSPpTRTAGE-RQAAATAENALGGAFKALGRHNEALAAFRRALALL 103
                 69********************887.55******************************986 PP

  == domain 2  score: 21.4 bits;  conditional E-value: 2.2e-07
      TPR_12   2 vatalnnlaavlrrlgrydeAlellekaleia.rrllGpdhpltatt 47 
                  at+ +nl+avl+  gr  eA++ + +al+    +++ +d +++a++
  KOO21313.1 112 EATVESNLGAVLADTGRPKEAEARYSRALRTLdAAVHADDDDDEAAA 158
                 689999***********************999777799999998887 PP

  == domain 3  score: 50.9 bits;  conditional E-value: 1.3e-16
      TPR_12   3 atalnnlaavlrrlgrydeAlellekaleiarrllGpdhpltattlrnLgrlyralgryeeAlelleealaia 75 
                 a +lnn+a++ + +gr++eA +l+ +al++++r+lG  h ++a++l+n + l++ l r++eA++ll++a +i 
  KOO21313.1 174 ADVLNNMADLRHGAGRLEEAHALHARALALRQRALGARHGDLASSLNNVAVLLLDLRRHDEAVKLLRRAAKIS 246
                 78999****************************************************************9885 PP

  == domain 4  score: 59.3 bits;  conditional E-value: 3.1e-19
      TPR_12   1 dvatalnnlaavlrrlgrydeAlellekaleiarrllGpdhpltattlrnLgrlyralgryeeAlelleealaia 75 
                 d+a++lnn+a++l+ l r+deA +ll++a  i + + G +hp+ at+l nLg ++ +lgr+ +A+++l++a+ai 
  KOO21313.1 214 DLASSLNNVAVLLLDLRRHDEAVKLLRRAAKISKTAAGAKHPQHATALANLGGALTQLGRHSDARSYLQRAVAIN 288
                 57999****************************999************************************985 PP

>> TPR_10  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.9   0.1    0.0027       2.9      16      30 ..      45      59 ..      38      60 .. 0.89
   2 !   12.7   1.8   8.4e-05     0.089       6      31 ..      77     102 ..      72     103 .. 0.92
   3 !   15.8   0.1   8.7e-06    0.0091       6      37 ..     117     148 ..     117     153 .. 0.87
   4 !   24.4   5.8   1.7e-08   1.8e-05       2      40 ..     174     212 ..     173     214 .. 0.95
   5 !   35.2   0.2     7e-12   7.4e-09       1      41 [.     215     255 ..     215     256 .. 0.97
   6 !   34.1   2.0   1.6e-11   1.6e-08       2      40 ..     258     296 ..     257     298 .. 0.97

  Alignments for each domain:
  == domain 1  score: 7.9 bits;  conditional E-value: 0.0027
      TPR_10 16 grydeAealleeala 30
                gry+eA+ lle+a++
  KOO21313.1 45 GRYAEAVPLLERAIR 59
                9************96 PP

  == domain 2  score: 12.7 bits;  conditional E-value: 8.4e-05
      TPR_10   6 nNLanalrqrgrydeAealleealai 31 
                 n L+ a  ++gr++eA+a +++ala+
  KOO21313.1  77 NALGGAFKALGRHNEALAAFRRALAL 102
                 89**********************96 PP

  == domain 3  score: 15.8 bits;  conditional E-value: 8.7e-06
      TPR_10   6 nNLanalrqrgrydeAealleealairrrllG 37 
                 +NL+++l ++gr +eAea + +al++  +++ 
  KOO21313.1 117 SNLGAVLADTGRPKEAEARYSRALRTLDAAVH 148
                 6***********************99776665 PP

  == domain 4  score: 24.4 bits;  conditional E-value: 1.7e-08
      TPR_10   2 AsslnNLanalrqrgrydeAealleealairrrllGpdH 40 
                 A  lnN+a + +  gr++eA al+ +ala+r+r+lG+ H
  KOO21313.1 174 ADVLNNMADLRHGAGRLEEAHALHARALALRQRALGARH 212
                 889**********************************99 PP

  == domain 5  score: 35.2 bits;  conditional E-value: 7e-12
      TPR_10   1 tAsslnNLanalrqrgrydeAealleealairrrllGpdHP 41 
                 +AsslnN a++l +++r+deA++ll++a  i + + G+ HP
  KOO21313.1 215 LASSLNNVAVLLLDLRRHDEAVKLLRRAAKISKTAAGAKHP 255
                 69**************************************9 PP

  == domain 6  score: 34.1 bits;  conditional E-value: 1.6e-11
      TPR_10   2 AsslnNLanalrqrgrydeAealleealairrrllGpdH 40 
                 A++l NL+ al+q+gr+ +A+ +l++a+ai  ++lG+ H
  KOO21313.1 258 ATALANLGGALTQLGRHSDARSYLQRAVAINTAALGDAH 296
                 89***********************************99 PP

>> TPR_1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.6   0.0     0.031        32      13      28 ..      43      58 ..      38      59 .. 0.82
   2 !   18.8   0.5   9.7e-07     0.001       2      30 ..      74     102 ..      73     104 .. 0.91
   3 !    9.4   0.0   0.00092      0.97       4      29 ..     116     141 ..     113     142 .. 0.91
   4 !    7.0   0.2    0.0052       5.5       1      31 [.     174     204 ..     174     206 .. 0.93
   5 !   13.8   0.0   3.6e-05     0.038       1      30 [.     216     245 ..     216     248 .. 0.92
   6 !   17.7   0.0   2.2e-06    0.0023       1      31 [.     258     288 ..     258     288 .. 0.95
   7 ?   -3.4   0.0       9.7     1e+04      19      30 ..     375     386 ..     374     388 .. 0.74

  Alignments for each domain:
  == domain 1  score: 4.6 bits;  conditional E-value: 0.031
                HTT-HHHHHHHHHHHH CS
       TPR_1 13 klgkydeAleyyekAL 28
                  g+y eA+   e+A+
  KOO21313.1 43 AGGRYAEAVPLLERAI 58
                569************9 PP

  == domain 2  score: 18.8 bits;  conditional E-value: 9.7e-07
                 HHHHHHHHHHHHTT-HHHHHHHHHHHHHH CS
       TPR_1   2 kalynlGnayfklgkydeAleyyekALel 30 
                  a + lG a+  lg+++eAl+++++AL l
  KOO21313.1  74 TAENALGGAFKALGRHNEALAAFRRALAL 102
                 577889*********************97 PP

  == domain 3  score: 9.4 bits;  conditional E-value: 0.00092
                 HHHHHHHHHHTT-HHHHHHHHHHHHH CS
       TPR_1   4 lynlGnayfklgkydeAleyyekALe 29 
                   nlG+++   g+++eA++ y++AL+
  KOO21313.1 116 ESNLGAVLADTGRPKEAEARYSRALR 141
                 57*********************995 PP

  == domain 4  score: 7.0 bits;  conditional E-value: 0.0052
                 HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHS CS
       TPR_1   1 akalynlGnayfklgkydeAleyyekALeln 31 
                 a++l+n++ + +  g+++eA +   +AL l+
  KOO21313.1 174 ADVLNNMADLRHGAGRLEEAHALHARALALR 204
                 799******************9999999986 PP

  == domain 5  score: 13.8 bits;  conditional E-value: 3.6e-05
                 HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH CS
       TPR_1   1 akalynlGnayfklgkydeAleyyekALel 30 
                 a +l+n +++++ l ++deA++  ++A ++
  KOO21313.1 216 ASSLNNVAVLLLDLRRHDEAVKLLRRAAKI 245
                 5689***********************987 PP

  == domain 6  score: 17.7 bits;  conditional E-value: 2.2e-06
                 HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHS CS
       TPR_1   1 akalynlGnayfklgkydeAleyyekALeln 31 
                 a al nlG a+ +lg++ +A  y ++A+ +n
  KOO21313.1 258 ATALANLGGALTQLGRHSDARSYLQRAVAIN 288
                 6799************************998 PP

  == domain 7  score: -3.4 bits;  conditional E-value: 9.7
                 HHHHHHHHHHHH CS
       TPR_1  19 eAleyyekALel 30 
                  Al+   +A++l
  KOO21313.1 375 RALQSIVQAIRL 386
                 588888888887 PP

>> TPR_2  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.7   0.0    0.0042       4.4       8      29 ..      38      59 ..      38      60 .. 0.89
   2 !   16.8   0.8   4.9e-06    0.0052       5      30 ..      77     102 ..      73     106 .. 0.90
   3 !   11.3   0.0   0.00028       0.3       5      29 ..     117     141 ..     113     143 .. 0.93
   4 !    6.5   1.0    0.0096        10       1      30 [.     174     203 ..     174     207 .. 0.90
   5 !   15.1   0.0   1.8e-05     0.019       3      32 ..     218     247 ..     216     249 .. 0.90
   6 !   17.4   0.1   3.2e-06    0.0033       1      31 [.     258     288 ..     258     290 .. 0.94

  Alignments for each domain:
  == domain 1  score: 7.7 bits;  conditional E-value: 0.0042
       TPR_2  8 GlayyklgdyeeAleafekAle 29
                Gla+ + g+y+eA+ ++e+A++
  KOO21313.1 38 GLAAVAGGRYAEAVPLLERAIR 59
                6777888*************96 PP

  == domain 2  score: 16.8 bits;  conditional E-value: 4.9e-06
       TPR_2   5 ynlGlayyklgdyeeAleafekAlel 30 
                 ++lG a  +lg+++eAl+af++Al+l
  KOO21313.1  77 NALGGAFKALGRHNEALAAFRRALAL 102
                 78999*******************98 PP

  == domain 3  score: 11.3 bits;  conditional E-value: 0.00028
       TPR_2   5 ynlGlayyklgdyeeAleafekAle 29 
                  nlG +++  g+++eA++ + +Al+
  KOO21313.1 117 SNLGAVLADTGRPKEAEARYSRALR 141
                 59*********************97 PP

  == domain 4  score: 6.5 bits;  conditional E-value: 0.0096
       TPR_2   1 aealynlGlayyklgdyeeAleafekAlel 30 
                 a++l+n++++   +g++eeA+++  +Al+l
  KOO21313.1 174 ADVLNNMADLRHGAGRLEEAHALHARALAL 203
                 689******************998888887 PP

  == domain 5  score: 15.1 bits;  conditional E-value: 1.8e-05
       TPR_2   3 alynlGlayyklgdyeeAleafekAleldP 32 
                  l+n + +++ l +++eA++++++A ++  
  KOO21313.1 218 SLNNVAVLLLDLRRHDEAVKLLRRAAKISK 247
                 6899**********************9976 PP

  == domain 6  score: 17.4 bits;  conditional E-value: 3.2e-06
       TPR_2   1 aealynlGlayyklgdyeeAleafekAleld 31 
                 a al nlG a+ +lg++ +A+ ++++A++++
  KOO21313.1 258 ATALANLGGALTQLGRHSDARSYLQRAVAIN 288
                 6799************************998 PP

>> TPR_8  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.5   0.0     0.023        24      13      32 ..      43      62 ..      38      64 .. 0.82
   2 !   11.7   0.1   0.00023      0.24       6      29 ..      78     101 ..      77     102 .. 0.90
   3 ?    2.9   0.0      0.15   1.6e+02       6      28 ..     118     140 ..     117     142 .. 0.89
   4 ?    2.9   0.1      0.15   1.6e+02       1      20 [.     174     193 ..     174     205 .. 0.89
   5 !   15.2   0.0   1.7e-05     0.018       1      32 [.     216     247 ..     216     248 .. 0.93
   6 !   14.7   0.0   2.5e-05     0.027       1      31 [.     258     288 ..     258     290 .. 0.93

  Alignments for each domain:
  == domain 1  score: 5.5 bits;  conditional E-value: 0.023
                HTT-HHHHHHHHHHHHHHHH CS
       TPR_8 13 klgdyeeAkeyyekaleldp 32
                  g+y eA+  +e+a++  p
  KOO21313.1 43 AGGRYAEAVPLLERAIRSPP 62
                569*************8766 PP

  == domain 2  score: 11.7 bits;  conditional E-value: 0.00023
                 HHHHHHHHTT-HHHHHHHHHHHHH CS
       TPR_8   6 nlgsiylklgdyeeAkeyyekale 29 
                  lg + + lg+++eA +++++al 
  KOO21313.1  78 ALGGAFKALGRHNEALAAFRRALA 101
                 688999****************96 PP

  == domain 3  score: 2.9 bits;  conditional E-value: 0.15
                 HHHHHHHHTT-HHHHHHHHHHHH CS
       TPR_8   6 nlgsiylklgdyeeAkeyyekal 28 
                 nlg ++ ++g+ +eA++ y +al
  KOO21313.1 118 NLGAVLADTGRPKEAEARYSRAL 140
                 79999***********9888887 PP

  == domain 4  score: 2.9 bits;  conditional E-value: 0.15
                 CCHHHHHHHHHHHTT-HHHH CS
       TPR_8   1 aeayynlgsiylklgdyeeA 20 
                 a++++n++++ +  g++eeA
  KOO21313.1 174 ADVLNNMADLRHGAGRLEEA 193
                 6899***************9 PP

  == domain 5  score: 15.2 bits;  conditional E-value: 1.7e-05
                 CCHHHHHHHHHHHTT-HHHHHHHHHHHHHHHH CS
       TPR_8   1 aeayynlgsiylklgdyeeAkeyyekaleldp 32 
                 a++++n + ++l+l +++eA++ +++a ++++
  KOO21313.1 216 ASSLNNVAVLLLDLRRHDEAVKLLRRAAKISK 247
                 57899************************986 PP

  == domain 6  score: 14.7 bits;  conditional E-value: 2.5e-05
                 CCHHHHHHHHHHHTT-HHHHHHHHHHHHHHH CS
       TPR_8   1 aeayynlgsiylklgdyeeAkeyyekaleld 31 
                 a a+ nlg ++ +lg++  A +y+++a+ ++
  KOO21313.1 258 ATALANLGGALTQLGRHSDARSYLQRAVAIN 288
                 5799************************987 PP

>> TPR_7  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.1   0.0    0.0027       2.9      12      32 ..      44      62 ..      38      65 .. 0.84
   2 !   10.7   0.2    0.0004      0.42       3      29 ..      77     103 ..      77     108 .. 0.91
   3 !    8.2   0.2    0.0026       2.7       4      30 ..     118     150 ..     117     157 .. 0.77
   4 !   11.0   1.1   0.00034      0.36       2      34 ..     177     209 ..     176     211 .. 0.91
   5 !   13.2   0.0   6.6e-05      0.07       1      28 [.     218     245 ..     218     255 .. 0.87
   6 !   13.7   0.3   4.4e-05     0.047       1      27 [.     260     286 ..     260     301 .. 0.88

  Alignments for each domain:
  == domain 1  score: 8.1 bits;  conditional E-value: 0.0027
       TPR_7 12 lGdyeeAielyeqsLaltkdp 32
                 G+y+eA+ l+e+  a+++ p
  KOO21313.1 44 GGRYAEAVPLLER--AIRSPP 62
                59***********..998766 PP

  == domain 2  score: 10.7 bits;  conditional E-value: 0.0004
       TPR_7   3 lnLarlysrlGdyeeAielyeqsLalt 29 
                 ++L+ ++ +lG++ eA+  ++++Lal 
  KOO21313.1  77 NALGGAFKALGRHNEALAAFRRALALL 103
                 68********************99875 PP

  == domain 3  score: 8.2 bits;  conditional E-value: 0.0026
       TPR_7   4 nLarlysrlGdyeeAielyeqsL.alt.....k 30 
                 nL+ +  + G+ +eA+  y ++L  l+     +
  KOO21313.1 118 NLGAVLADTGRPKEAEARYSRALrTLDaavhaD 150
                 9********************775554555542 PP

  == domain 4  score: 11.0 bits;  conditional E-value: 0.00034
       TPR_7   2 LlnLarlysrlGdyeeAielyeqsLaltkdped 34 
                 L+n+a+l++  G+ eeA  l+ ++Lal+ + ++
  KOO21313.1 177 LNNMADLRHGAGRLEEAHALHARALALRQRALG 209
                 9**************************987766 PP

  == domain 5  score: 13.2 bits;  conditional E-value: 6.6e-05
       TPR_7   1 aLlnLarlysrlGdyeeAielyeqsLal 28 
                 +L+n a+l  +l++++eA++l++++  +
  KOO21313.1 218 SLNNVAVLLLDLRRHDEAVKLLRRAAKI 245
                 79**********************6655 PP

  == domain 6  score: 13.7 bits;  conditional E-value: 4.4e-05
       TPR_7   1 aLlnLarlysrlGdyeeAielyeqsLa 27 
                 aL nL+ +  +lG++++A ++++++ a
  KOO21313.1 260 ALANLGGALTQLGRHSDARSYLQRAVA 286
                 799*********************544 PP

>> TPR_16  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.9  10.0   1.9e-07    0.0002       4      64 ..      38     103 ..      37     108 .. 0.93
   2 !   11.9   9.3   0.00027      0.28       2      63 ..      78     142 ..      78     146 .. 0.91
   3 !   10.8   9.6   0.00056      0.59      14      64 ..     198     246 ..     178     250 .. 0.74
   4 !   21.4   1.2   2.7e-07   0.00029      25      62 ..     249     286 ..     248     291 .. 0.89

  Alignments for each domain:
  == domain 1  score: 21.9 bits;  conditional E-value: 1.9e-07
      TPR_16   4 araalragdyddAaaaleaalkrdpssPd........aaeAllllgdaalrqgrlaeAaalyraalraa 64 
                 ++aa++ g+y++A+++le+a+++    P         aa A ++lg a+ ++gr+ eA+a++r+al+  
  KOO21313.1  38 GLAAVAGGRYAEAVPLLERAIRSP---PTrtagerqaAATAENALGGAFKALGRHNEALAAFRRALALL 103
                 6899********************...7667799*******************************9765 PP

  == domain 2  score: 11.9 bits;  conditional E-value: 0.00027
      TPR_16   2 alaraalragdyddAaaaleaalkrdpssPd...aaeAllllgdaalrqgrlaeAaalyraalra 63 
                 al+ a+ ++g+  +A+aa+++al++  +s +    a    +lg +++  gr +eA+a y +alr 
  KOO21313.1  78 ALGGAFKALGRHNEALAAFRRALALLDGSGAlldEATVESNLGAVLADTGRPKEAEARYSRALRT 142
                 6899999************99999998887789999999******************99999975 PP

  == domain 3  score: 10.8 bits;  conditional E-value: 0.00056
      TPR_16  14 ddAaaaleaalkrdpssPdaaeAllllgdaalrqgrlaeAaalyraalraa 64 
                 ++A+a+ ++al ++  + d a +l++ ++++l + r++eA+ l+r+a++ +
  KOO21313.1 198 ARALALRQRALGAR--HGDLASSLNNVAVLLLDLRRHDEAVKLLRRAAKIS 246
                 45555555555555..566****************************9876 PP

  == domain 4  score: 21.4 bits;  conditional E-value: 2.7e-07
      TPR_16  25 krdpssPdaaeAllllgdaalrqgrlaeAaalyraalr 62 
                 ++++++P++a Al +lg a+ ++gr+ +A+ ++++a++
  KOO21313.1 249 AAGAKHPQHATALANLGGALTQLGRHSDARSYLQRAVA 286
                 677888****************************9985 PP

>> TPR_14  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.8   0.2    0.0031       3.3      10      32 ..      40      62 ..      38      74 .. 0.79
   2 !   13.7   1.5   8.4e-05     0.088       6      31 ..      78     103 ..      73     114 .. 0.87
   3 !    9.5   1.4    0.0018       1.9       7      30 ..     119     142 ..     117     161 .. 0.78
   4 ?    2.2   3.6      0.42   4.4e+02      10      31 ..     183     204 ..     168     213 .. 0.52
   5 !   13.7   0.7   8.1e-05     0.086       9      39 ..     224     262 ..     222     265 .. 0.74
   6 !   13.1   0.3   0.00013      0.13       3      32 ..     260     289 ..     258     297 .. 0.87

  Alignments for each domain:
  == domain 1  score: 8.8 bits;  conditional E-value: 0.0031
      TPR_14 10 allalGdpdeAiallrralalaP 32
                a  a G+++eA+ ll+ra++  P
  KOO21313.1 40 AAVAGGRYAEAVPLLERAIRSPP 62
                66789*************99544 PP

  == domain 2  score: 13.7 bits;  conditional E-value: 8.4e-05
      TPR_14   6 alaeallalGdpdeAiallrralala 31 
                 al+ a+ alG++ eA+a++rralal 
  KOO21313.1  78 ALGGAFKALGRHNEALAAFRRALALL 103
                 8999*******************975 PP

  == domain 3  score: 9.5 bits;  conditional E-value: 0.0018
      TPR_14   7 laeallalGdpdeAiallrralal 30 
                 l+++l+  G+p+eA+a + ral++
  KOO21313.1 119 LGAVLADTGRPKEAEARYSRALRT 142
                 7899*****************994 PP

  == domain 4  score: 2.2 bits;  conditional E-value: 0.42
      TPR_14  10 allalGdpdeAiallrralala 31 
                 +   +G+++eA al  ralal 
  KOO21313.1 183 LRHGAGRLEEAHALHARALALR 204
                 2223455555555555555543 PP

  == domain 5  score: 13.7 bits;  conditional E-value: 8.1e-05
      TPR_14   9 eallalGdpdeAiallrrala........laPddaeawl 39 
                  +ll l+++deA++llrra +        ++P++a+a+ 
  KOO21313.1 224 VLLLDLRRHDEAVKLLRRAAKisktaagaKHPQHATALA 262
                 57899**************99556665555666666655 PP

  == domain 6  score: 13.1 bits;  conditional E-value: 0.00013
      TPR_14   3 allalaeallalGdpdeAiallrralalaP 32 
                 al+ l+ al +lG++ +A+ +l+ra+a + 
  KOO21313.1 260 ALANLGGALTQLGRHSDARSYLQRAVAINT 289
                 677899********************9875 PP

>> TPR_11  TPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.3   0.0     0.015        16       1      22 [.      38      59 ..      38      63 .. 0.88
   2 !   11.3   0.1   0.00019       0.2       3      23 ..      82     102 ..      80     102 .. 0.91
   3 ?    1.2   0.0      0.29     3e+02       3      22 ..     122     141 ..     120     142 .. 0.80
   4 ?    0.1   0.0      0.63   6.7e+02       7      25 ..     187     205 ..     181     208 .. 0.82
   5 ?    5.1   0.0     0.018        18       9      28 ..     231     250 ..     225     252 .. 0.86
   6 ?    3.4   0.0     0.059        62       3      24 ..     267     288 ..     255     291 .. 0.85

  Alignments for each domain:
  == domain 1  score: 5.3 bits;  conditional E-value: 0.015
      TPR_11  1 GdayyeqGkyeeAieaYkkAlk 22
                G a ++ G+y eA+  +++A++
  KOO21313.1 38 GLAAVAGGRYAEAVPLLERAIR 59
                6677899*************97 PP

  == domain 2  score: 11.3 bits;  conditional E-value: 0.00019
      TPR_11   3 ayyeqGkyeeAieaYkkAlkl 23 
                 a+ ++G+ +eA++a+++Al+l
  KOO21313.1  82 AFKALGRHNEALAAFRRALAL 102
                 7899***************97 PP

  == domain 3  score: 1.2 bits;  conditional E-value: 0.29
      TPR_11   3 ayyeqGkyeeAieaYkkAlk 22 
                 ++ + G+ +eA ++Y++Al+
  KOO21313.1 122 VLADTGRPKEAEARYSRALR 141
                 66778888999999999986 PP

  == domain 4  score: 0.1 bits;  conditional E-value: 0.63
      TPR_11   7 qGkyeeAieaYkkAlkldP 25 
                  G++eeA +   +Al+l++
  KOO21313.1 187 AGRLEEAHALHARALALRQ 205
                 699****999999999875 PP

  == domain 5  score: 5.1 bits;  conditional E-value: 0.018
      TPR_11   9 kyeeAieaYkkAlkldPdna 28 
                 + +eA++ +++A k++ + a
  KOO21313.1 231 RHDEAVKLLRRAAKISKTAA 250
                 689************99877 PP

  == domain 6  score: 3.4 bits;  conditional E-value: 0.059
      TPR_11   3 ayyeqGkyeeAieaYkkAlkld 24 
                 a++++G+  +A   +++A++++
  KOO21313.1 267 ALTQLGRHSDARSYLQRAVAIN 288
                 7889999999999999999987 PP

>> TPR_19  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.5   1.1   0.00063      0.67       3      52 ..      43     100 ..      41     104 .. 0.75
   2 ?    4.1   7.1     0.062        66       5      54 ..      87     142 ..      83     161 .. 0.77
   3 ?    1.6   4.0      0.38     4e+02      22      56 ..     171     205 ..     156     211 .. 0.81
   4 !   10.3   1.9   0.00073      0.77       4      53 ..     187     244 ..     185     248 .. 0.71
   5 !   21.5   1.1   2.3e-07   0.00025       1      52 [.     226     285 ..     226     292 .. 0.84

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00063
      TPR_19   3 aegdyaeAlalleqal........qedpknaearllLAeallalgqldeAealLdalp 52 
                 a g+yaeA++lle+a+         e    a a  +L  a  alg+ +eA a+  +++
  KOO21313.1  43 AGGRYAEAVPLLERAIrspptrtaGERQAAATAENALGGAFKALGRHNEALAAFRRAL 100
                 669***********99555544322233355555599**************9998876 PP

  == domain 2  score: 4.1 bits;  conditional E-value: 0.062
      TPR_19   5 gdyaeAlalleqalqedpk......naearllLAeallalgqldeAealLdalpee 54 
                 g++ eAla++++al+   +       a +  +L  +l  +g+++eAea  +++++ 
  KOO21313.1  87 GRHNEALAAFRRALALLDGsgalldEATVESNLGAVLADTGRPKEAEARYSRALRT 142
                 8999********99886654556656666668899999999999999888777765 PP

  == domain 3  score: 1.6 bits;  conditional E-value: 0.38
      TPR_19  22 pknaearllLAeallalgqldeAealLdalpeedp 56 
                    a+++ ++A++   +g+l+eA al +++++  +
  KOO21313.1 171 RARADVLNNMADLRHGAGRLEEAHALHARALALRQ 205
                 5678999999999999******9999888877665 PP

  == domain 4  score: 10.3 bits;  conditional E-value: 0.00073
      TPR_19   4 egdyaeAlalleqalqe.....dpknaearllL...AeallalgqldeAealLdalpe 53 
                 +g+++eA+al ++al+       + +++++  L   A +ll l + deA +lL ++ +
  KOO21313.1 187 AGRLEEAHALHARALALrqralGARHGDLASSLnnvAVLLLDLRRHDEAVKLLRRAAK 244
                 688888888888888663334333344444444446*****************99875 PP

  == domain 5  score: 21.5 bits;  conditional E-value: 2.3e-07
      TPR_19   1 llaegdyaeAlalleqalqe........dpknaearllLAeallalgqldeAealLdalp 52 
                 ll+  +++eA++ll++a +          p++a a+++L  al +lg+  +A+  L+++ 
  KOO21313.1 226 LLDLRRHDEAVKLLRRAAKIsktaagakHPQHATALANLGGALTQLGRHSDARSYLQRAV 285
                 678889**********774444444444****************************9986 PP

>> TPR_17  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.7   0.0       0.4   4.3e+02      18      33 ..     118     133 ..     117     134 .. 0.93
   2 ?    5.7   0.1     0.021        22      13      33 ..     174     194 ..     172     195 .. 0.94
   3 ?    4.3   0.0      0.06        63      11      33 ..     214     236 ..     205     237 .. 0.87
   4 ?    6.5   0.0     0.012        13       8      33 ..     253     278 ..     252     279 .. 0.92

  Alignments for each domain:
  == domain 1  score: 1.7 bits;  conditional E-value: 0.4
      TPR_17  18 nLAelllknGdlmtAr 33 
                 nL+ +l+  G++++A+
  KOO21313.1 118 NLGAVLADTGRPKEAE 133
                 9**************8 PP

  == domain 2  score: 5.7 bits;  conditional E-value: 0.021
      TPR_17  13 adaynnLAelllknGdlmtAr 33 
                 ad++nn+A l + +G+l++A+
  KOO21313.1 174 ADVLNNMADLRHGAGRLEEAH 194
                 89*****************98 PP

  == domain 3  score: 4.3 bits;  conditional E-value: 0.06
      TPR_17  11 nnadaynnLAelllknGdlmtAr 33 
                 + a ++nn A+lll + ++++A+
  KOO21313.1 214 DLASSLNNVAVLLLDLRRHDEAV 236
                 6699***************9997 PP

  == domain 4  score: 6.5 bits;  conditional E-value: 0.012
      TPR_17   8 ldPnnadaynnLAelllknGdlmtAr 33 
                 ++P +a a+ nL+ +l ++G++ +Ar
  KOO21313.1 253 KHPQHATALANLGGALTQLGRHSDAR 278
                 79******************999997 PP

>> TPR_6  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.0   0.0     0.043        46       7      28 ..      38      59 ..      38      62 .. 0.87
   2 ?    5.2   0.2     0.037        39       9      27 ..      82     100 ..      78     102 .. 0.85
   3 ?   -1.0   0.0       3.4   3.5e+03      13      24 ..     134     144 ..     119     149 .. 0.70
   4 ?    3.6   0.2      0.12   1.3e+02       7      27 ..     223     243 ..     194     245 .. 0.83
   5 ?    6.0   0.1      0.02        21       2      27 ..     260     285 ..     259     287 .. 0.88

  Alignments for each domain:
  == domain 1  score: 5.0 bits;  conditional E-value: 0.043
                HHHHHHHHHHHHHHHHHHHHHH CS
       TPR_6  7 alsyrklgdtdkAlealerlik 28
                +l+  ++g++++A+ +ler i+
  KOO21313.1 38 GLAAVAGGRYAEAVPLLERAIR 59
                67778899***********998 PP

  == domain 2  score: 5.2 bits;  conditional E-value: 0.037
                 HHHHHHHHHHHHHHHHHHH CS
       TPR_6   9 syrklgdtdkAlealerli 27 
                 ++++lg++ +Al+a++r +
  KOO21313.1  82 AFKALGRHNEALAAFRRAL 100
                 677899**********987 PP

  == domain 3  score: -1.0 bits;  conditional E-value: 3.4
                 HHHHHHHHHHHH CS
       TPR_6  13 lgdtdkAleale 24 
                 + ++++Al++l+
  KOO21313.1 134 A-RYSRALRTLD 144
                 3.6777777776 PP

  == domain 4  score: 3.6 bits;  conditional E-value: 0.12
                 HHHHHHHHHHHHHHHHHHHHH CS
       TPR_6   7 alsyrklgdtdkAlealerli 27 
                 a +++ l ++d+A+++l+r  
  KOO21313.1 223 AVLLLDLRRHDEAVKLLRRAA 243
                 556666689*********986 PP

  == domain 5  score: 6.0 bits;  conditional E-value: 0.02
                 HHHHHHHHHHHHHHHHHHHHHHHHHH CS
       TPR_6   2 AlyklalsyrklgdtdkAlealerli 27 
                 Al +l+ ++ +lg++++A+ +l+r +
  KOO21313.1 260 ALANLGGALTQLGRHSDARSYLQRAV 285
                 7788888999999***********87 PP

>> DUF1442  Protein of unknown function (DUF1442)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.3   0.0     0.084        89     106     142 ..     212     248 ..     193     261 .. 0.81
   2 !   10.9   0.1    0.0002      0.21      96     191 ..     308     403 ..     274     405 .] 0.85

  Alignments for each domain:
  == domain 1  score: 2.3 bits;  conditional E-value: 0.084
     DUF1442 106 vektmeklqGvdflvvdskrkefvanalrlaklskrG 142
                  ++    l+ v  l++d +r++ +++ lr a+  ++ 
  KOO21313.1 212 HGDLASSLNNVAVLLLDLRRHDEAVKLLRRAAKISKT 248
                 5666778999**************9*99876544443 PP

  == domain 2  score: 10.9 bits;  conditional E-value: 0.0002
     DUF1442  96 elpevivaeevektmeklqGvdflv.vdskrkefvanalrlaklskrGavlvcknalrrsisgfkwkkvlrdrrvvrsvtlpvggGleivh.vaaags 191
                  + +++ a+++e t+e+l+ v   v  d +  +fv +a ++ + s++ av   +++    + ++  +++l+   +v+++ l   +G+ i+  +aaag+
  KOO21313.1 308 VFDDTLAAKHIEATLERLSRVTITVpADVRLTDFVLAAANVEQQSSQVAVSFVRSSEGLRLVAYGSQRALQ--SIVQAIRLHSKEGISITWqLAAAGR 403
                 46789999**************9986799*************************99999999999999996..699***********99852566655 PP

>> 2-ph_phosp  2-phosphosulpholactate phosphatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.0       1.2   1.3e+03     177     207 ..     247     276 ..     206     285 .. 0.53
   2 ?   12.4   0.0   6.3e-05     0.066     148     210 ..     309     379 ..     302     386 .. 0.92

  Alignments for each domain:
  == domain 1  score: -1.6 bits;  conditional E-value: 1.2
                 HHHHHC-STHHHHHHHSHHHHHHHHTT-HHH CS
  2-ph_phosp 177 lalyeskedllealkksshgkrLkelgleeD 207
                 ++++  ++ ++ a   ++ g  L++lg ++D
  KOO21313.1 247 KTAAG-AKHPQHATALANLGGALTQLGRHSD 276
                 11111.2444444444555555555555555 PP

  == domain 2  score: 12.4 bits;  conditional E-value: 6.3e-05
                 HHHHHHHHHHHHHHHH........HS.SEE-HHHHHHHHHHHC-STHHHHHHHSHHHHHHHHTT-HHHHHH CS
  2-ph_phosp 148 leDtlcAgalveelek........eeelelsDaalaalalyeskedllealkksshgkrLkelgleeDley 210
                  +Dtl+A+ + ++le+          ++ l+D +laa ++ ++++++   + +ss+g rL ++g ++ l+ 
  KOO21313.1 309 FDDTLAAKHIEATLERlsrvtitvPADVRLTDFVLAAANVEQQSSQVAVSFVRSSEGLRLVAYGSQRALQS 379
                 69*********************9778**********************************9999887765 PP

>> DUF3856  Domain of Unknown Function (DUF3856)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   1.2   0.00036      0.38      54     126 ..      72     139 ..      34     148 .. 0.72
   2 ?    2.1   0.4      0.17   1.8e+02      91     129 ..     208     245 ..     136     258 .. 0.67
   3 ?    6.6   0.1    0.0071       7.5      24      81 ..     231     284 ..     225     318 .. 0.81

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00036
                 HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHH CS
     DUF3856  54 dalchaglsealaklgrydealesadkalryfnrrGeleqdeGklWiaavfsravaleelGrkdealkafrma 126
                  a +  +l +a+  lgr++eal +  +al  ++  G l ++      ++  + ++ l+++Gr +ea   +  a
  KOO21313.1  72 AATAENALGGAFKALGRHNEALAAFRRALALLDGSGALLDEA-----TVESNLGAVLADTGRPKEAEARYSRA 139
                 467778999*********************999999987653.....23445667777888888877777665 PP

  == domain 2  score: 2.1 bits;  conditional E-value: 0.17
                 TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH CS
     DUF3856  91 leqdeGklWiaavfsravaleelGrkdealkafrmagem 129
                 l    G l  + + + av l +l r+dea+k +r a+ +
  KOO21313.1 208 LGARHGDL-ASSLNNVAVLLLDLRRHDEAVKLLRRAAKI 245
                 55555554.345666777777888888888888877765 PP

  == domain 3  score: 6.6 bits;  conditional E-value: 0.0071
                 -HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHH CS
     DUF3856  24 ayeeaaasyrkalevsrtipaeeafdheGfdalchaglsealaklgrydealesadka 81 
                 +++ea++  r+a ++s+t +      h    a + a l +al++lgr+ +a +  ++a
  KOO21313.1 231 RHDEAVKLLRRAAKISKTAAGAKHPQH----ATALANLGGALTQLGRHSDARSYLQRA 284
                 688999999999999999877766555....678899999999999998886665555 PP

>> TPR_MalT  MalT-like TPR region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   1.0   6.6e-05     0.069      11     111 ..      41     144 ..      37     151 .. 0.82
   2 ?    9.1   9.0   0.00072      0.76      85     188 ..     179     285 ..     154     304 .. 0.74
   3 ?   -2.8   0.1       3.1   3.2e+03      47      90 ..     344     387 ..     337     393 .. 0.50

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 6.6e-05
    TPR_MalT  11 aiasgdaeralelArqALallpeddllar...iaatavlGeasllqGdleaAlqalqeaeklarqadslhvallallqqaeilvaqGrLheAletyeqa 106
                 a+a g+  +a+ l ++A+   p++   +r   ++a  +lG+a+   G+ ++Al+a++ a +l+++ ++l   ++    ++ +l   Gr +eA+  y +a
  KOO21313.1  41 AVAGGRYAEAVPLLERAIRSPPTRTAGERqaaATAENALGGAFKALGRHNEALAAFRRALALLDGSGALLDEATVESNLGAVLADTGRPKEAEARYSRA 139
                 67777777777777888888887777777422445568*******************************8866666678******************** PP

    TPR_MalT 107 lqlat 111
                 l+  +
  KOO21313.1 140 LRTLD 144
                 *9765 PP

  == domain 2  score: 9.1 bits;  conditional E-value: 0.00072
    TPR_MalT  85 qqaeilvaqGrLheAletyeqalqlateqglqqlplvgfllvlladllyEwndLeeAeqhlqeGielleqlepeaaldayvllari...alaqGdleeA 180
                   a+++   GrL+eA+ +  +al+l +++ +++       l   a ll++  + +eA + l+++ ++++    + + +  ++la +     + G++++A
  KOO21313.1 179 NMADLRHGAGRLEEAHALHARALALRQRALGARHGDLASSLNNVAVLLLDLRRHDEAVKLLRRAAKISKTAAGAKHPQHATALANLggaLTQLGRHSDA 277
                 457788888999999999999999999999988876666667779999999999999999999999888873333333344444441104556999999 PP

    TPR_MalT 181 etllekae 188
                  ++l++a 
  KOO21313.1 278 RSYLQRAV 285
                 99999885 PP

  == domain 3  score: -2.8 bits;  conditional E-value: 3.1
    TPR_MalT  47 GeasllqGdleaAlqalqeaeklarqadslhvallallqqaeil 90 
                 + a++ q   + A++  ++ e l + a  +++al +++q + ++
  KOO21313.1 344 AAANVEQQSSQVAVSFVRSSEGLRLVAYGSQRALQSIVQAIRLH 387
                 44555555555555555555555444444455555555544444 PP

>> TPR_4  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.0   0.8    0.0048       5.1       9      26 .]      39      56 ..      38      56 .. 0.92
   2 ?    3.5   1.2      0.14   1.5e+02      10      26 .]      82      98 ..      73      98 .. 0.83
   3 ?   12.3   0.0    0.0002      0.21       5      23 ..     117     135 ..     113     138 .. 0.89
   4 ?    0.1   8.0       1.8   1.9e+03       5      23 ..     178     196 ..     174     206 .. 0.88
   5 ?   -0.1   3.7       2.1   2.2e+03       3      16 ..     193     206 ..     193     211 .. 0.67
   6 ?    1.0   0.1      0.89   9.4e+02       8      26 .]     223     241 ..     220     241 .. 0.83
   7 ?    6.0   1.1     0.022        23       2      22 ..     259     279 ..     258     283 .. 0.88

  Alignments for each domain:
  == domain 1  score: 8.0 bits;  conditional E-value: 0.0048
       TPR_4  9 rallalGdldeAraller 26
                 a+ a G+++eA  ller
  KOO21313.1 39 LAAVAGGRYAEAVPLLER 56
                6899************98 PP

  == domain 2  score: 3.5 bits;  conditional E-value: 0.14
       TPR_4 10 allalGdldeAraller 26
                a  alG++ eA+a+++r
  KOO21313.1 82 AFKALGRHNEALAAFRR 98
                55699*********997 PP

  == domain 3  score: 12.3 bits;  conditional E-value: 0.0002
       TPR_4   5 laLArallalGdldeAral 23 
                 ++L+ +l+++G++ eA+a 
  KOO21313.1 117 SNLGAVLADTGRPKEAEAR 135
                 79***************96 PP

  == domain 4  score: 0.1 bits;  conditional E-value: 1.8
       TPR_4   5 laLArallalGdldeAral 23 
                  ++A + + +G+l+eA al
  KOO21313.1 178 NNMADLRHGAGRLEEAHAL 196
                 68899999********986 PP

  == domain 5  score: -0.1 bits;  conditional E-value: 2.1
       TPR_4   3 allaLArallalGd 16 
                 a+++ Aral+++ +
  KOO21313.1 193 AHALHARALALRQR 206
                 56667777777665 PP

  == domain 6  score: 1.0 bits;  conditional E-value: 0.89
       TPR_4   8 ArallalGdldeAraller 26 
                 A +ll+l ++deA  ll+r
  KOO21313.1 223 AVLLLDLRRHDEAVKLLRR 241
                 566777779*****99997 PP

  == domain 7  score: 6.0 bits;  conditional E-value: 0.022
       TPR_4   2 rallaLArallalGdldeAra 22 
                  al++L+ al +lG++ +Ar 
  KOO21313.1 259 TALANLGGALTQLGRHSDARS 279
                 699****************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (405 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       665  (0.0370907); expected 358.6 (0.02)
Passed bias filter:                      404  (0.0225333); expected 358.6 (0.02)
Passed Vit filter:                        49  (0.002733); expected 17.9 (0.001)
Passed Fwd filter:                        18  (0.00100396); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              17  [number of targets reported over threshold]
# CPU time: 0.56u 0.24s 00:00:00.80 Elapsed: 00:00:00.45
# Mc/sec: 2699.47
//
Query:       KOO21314.1  [L=425]
Description: sodium potassium calcium exchanger 4 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.2e-53  180.2  39.8    1.7e-27   96.2  16.2    2.1  2  Na_Ca_ex       Sodium/calcium exchanger protein
    0.00036   20.9   0.2    0.00064   20.1   0.2    1.3  1  Pep1_7         Elicitor peptide 1-7
  ------ inclusion threshold ------
      0.029   14.5   0.1      0.055   13.6   0.1    1.4  1  Voldacs        Regulator of volume decrease after cellular sw


Domain annotation for each model (and alignments):
>> Na_Ca_ex  Sodium/calcium exchanger protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   90.2  15.6   2.1e-29   1.3e-25       2     150 ..      60     202 ..      59     203 .. 0.90
   2 !   96.2  16.2   2.8e-31   1.7e-27       3     150 ..     269     416 ..     267     417 .. 0.83

  Alignments for each domain:
  == domain 1  score: 90.2 bits;  conditional E-value: 2.1e-29
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHTHHHHHHHHHH..BTTSSCE CS
    Na_Ca_ex   2 lfvlfilslllisvladflvssaeeiakslgisgsvlGltllAlgnslpElissiiaaltgevdlaignvlGsnifnlllviGlialigs..lkvdses 98 
                  +++f ++ +l +v+ d++v s+e+i++ l++s  v+G t++A+g+s+pEl++s++ +   + d++ig+++Gs++fnl+ +iG  al+++  l++d + 
  KOO21314.1  60 IWGIFYMFWALAIVCDDYFVASLEVISDELHLSTDVAGATFMAAGSSAPELFTSVMGVFAVKNDVGIGTIVGSAVFNLCCIIGGTALFTPqvLTIDWKP 158
                 5789************************************************************************************99766888888 PP

                 CCHHHHHHHHHHHHHHHHHHHTCHHHHHHTEEHHHHHHHHHHHHHHHHHHHH CS
    Na_Ca_ex  99 lkldlgllllvallllllvlllllplfvpgrltvleglvllllYalylvlsl 150
                 +++d  l+  ++++++++vl+        g +t+ e+++l+++Y ly+++++
  KOO21314.1 159 ITRDS-LFYAASIVAMIAVLV-D------GAVTLNEAIALIVTYSLYVLFMY 202
                 88888.655555555554444.5......********************987 PP

  == domain 2  score: 96.2 bits;  conditional E-value: 2.8e-31
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHTHHHHHHHHHHBTTSSCECCH CS
    Na_Ca_ex   3 fvlfilslllisvladflvssaeeiakslgisgsvlGltllAlgnslpElissiiaaltgevdlaignvlGsnifnlllviGlialigslkvdseslkl 101
                 + +f+ s+++i vl+ f+v +a++++++ +i ++v+G+t+lA+g+s+p+ i s+ +a+ g++d+a++n++Gsn+f++ll++G+++++g++ +++  +++
  KOO21314.1 269 MTTFFTSVFWIGVLSYFMVTWASKLGCIWNIHPAVMGVTILAAGTSVPDAIGSLLVARDGHGDMAVSNAIGSNVFDILLGLGVPWVMGAV-IYGGDVEV 366
                 679************************************************************************************993.33334466 PP

                 HH.HHHHHHHHHHHHHHHHTCHHHHH..HTEEHHHHHHHHHHHHHHHHHHHH CS
    Na_Ca_ex 102 dl.gllllvallllllvlllllplfv..pgrltvleglvllllYalylvlsl 150
                 d  ++  l+++l+ ++++ +++++ v    rlt+l+g++++++Y+l+++++l
  KOO21314.1 367 DAdNIVPLTLILF-GTLVGVYVVT-VcsGFRLTKLVGAIFFSMYFLFVAYVL 416
                 6644544444443.4333334333.23579******************9987 PP

>> Pep1_7  Elicitor peptide 1-7
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.1   0.2   1.1e-07   0.00064      12      56 ..     193     237 ..     191     248 .. 0.81

  Alignments for each domain:
  == domain 1  score: 20.1 bits;  conditional E-value: 1.1e-07
      Pep1_7  12 syylwipfsfihq.ilraflkclGLesssskspsssseeeeeetet 56 
                 +y+l+  f+ ++  i++a  +c G es+ss+ + +++++e+ee+e+
  KOO21314.1 193 TYSLYVLFMYFNTpIFEAVSRCCG-ESPSSPEEEEEEKKEDEEDED 237
                 789*********99**********.888888887776666666655 PP

>> Voldacs  Regulator of volume decrease after cellular swelling
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.1   9.3e-06     0.055      96     129 ..     204     237 ..     187     244 .. 0.78

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 9.3e-06
     Voldacs  96 ldnifealsacqelhpdpdeeddeedeeneenee 129
                 +++ifea+s+c   +p++ ee++ee++e+ee+e+
  KOO21314.1 204 NTPIFEAVSRCCGESPSSPEEEEEEKKEDEEDED 237
                 578*************999666666655555554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (425 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1103  (0.0615204); expected 358.6 (0.02)
Passed bias filter:                      547  (0.0305092); expected 358.6 (0.02)
Passed Vit filter:                        48  (0.00267723); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.53u 0.27s 00:00:00.80 Elapsed: 00:00:00.42
# Mc/sec: 3006.08
//
Query:       KOO21315.1  [L=1496]
Description: carbamoyl-phosphate synthase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   9.5e-106  352.0   0.0    5.7e-78  261.2   0.0    2.2  2  CPSase_L_D2      Carbamoyl-phosphate synthase L chain, ATP bi
    3.4e-50  169.2   0.0    6.8e-50  168.2   0.0    1.6  1  CPSase_sm_chain  Carbamoyl-phosphate synthase small chain, CP
    3.5e-42  144.3   0.0    1.3e-41  142.5   0.0    2.0  2  GATase           Glutamine amidotransferase class-I
    1.7e-38  131.7   0.1      4e-38  130.5   0.1    1.7  1  CPSase_L_D3      Carbamoyl-phosphate synthetase large chain, 
    3.4e-19   69.0   0.0      2e-11   43.8   0.0    2.3  2  ATP-grasp        ATP-grasp domain
    9.6e-18   64.5   0.0    7.2e-10   38.7   0.0    2.3  2  Dala_Dala_lig_C  D-ala D-ala ligase C-terminus
    3.6e-15   55.9   0.0      1e-14   54.5   0.0    1.9  1  MGS              MGS-like domain
    2.3e-14   53.3   0.1    4.6e-07   29.6   0.0    3.6  4  ATPgrasp_Ter     ATP-grasp in the biosynthetic pathway with T
    0.00018   21.4   0.1      0.023   14.4   0.1    2.5  2  Peptidase_C26    Peptidase C26
  ------ inclusion threshold ------
      0.017   15.1   0.0       0.29   11.2   0.0    2.5  2  ATP-grasp_3      ATP-grasp domain
       0.02   14.5   0.0      0.036   13.7   0.0    1.4  1  RimK             RimK-like ATP-grasp domain
       0.18   12.3   0.0        2.4    8.7   0.0    2.8  2  CoA_binding_2    CoA binding domain


Domain annotation for each model (and alignments):
>> CPSase_L_D2  Carbamoyl-phosphate synthase L chain, ATP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  261.2   0.0   3.8e-81   5.7e-78       1     209 [.     543     745 ..     543     747 .. 0.99
   2 !   88.7   0.0   2.5e-28   3.8e-25       1     205 [.    1081    1279 ..    1081    1285 .. 0.90

  Alignments for each domain:
  == domain 1  score: 261.2 bits;  conditional E-value: 3.8e-81
                  SHHHHHHHHHHTT-BBSSEECSSBSSHHHHHHHHHHH-SSEEEEETTCCTTTTEEEESSHHHHHHHHHHHHHHHHHHHSTS-EEEEE--SSSEEEEEE CS
  CPSase_L_D2   1 DkesakealkkinvpvvpssaapvetleealaiakeigyPviikaafglGGkGmrvarneeelaelvkkalaeakaafgnkqvlvekslkgpkeiEve 98 
                  D+  ++++l++in++++ps+a+  +tl +a++++k+ig+P++++ af+lGG+G+ ++ + +++++ +++a+a +      +qvlveksl g+ke+E+e
   KOO21315.1 543 DRGIFSDKLNEINERIAPSFAC--DTLAQAMEASKTIGFPCMVRCAFALGGLGSAIIPDAAKFEAHCREAFASS------PQVLVEKSLYGWKEVEYE 632
                  8999******************..*************************************************9......8***************** PP

                  EEEETTS-EEEEEEEEECCEC..TCCCCEEEES-SS--HHHHHHHHHHHHHHHHHHT-EEEEEEEEEEETTTTEEEEEEEESS--CCHHHHHHHHS-- CS
  CPSase_L_D2  99 vlrDakgnvitvcerenslql..rtqkvievAPsqtLtdeerqalreaavkvvrevgvvgagtveflldpkskeyyviEvNtRlsvesalaekaTGld 194
                  v+rD ++n+itvc++en+++l  +t+++i++APsqtLtd+e+++lr++a+kvvr++g+vg+++++++ldp s++y++iEvN+Rls++sala+kaTG++
   KOO21315.1 633 VVRDIADNCITVCNMENFDPLgvHTGDSIVIAPSQTLTDDEYHMLRTTAIKVVRHLGIVGECNIQYALDPLSQDYCIIEVNPRLSRSSALASKATGYP 730
                  ************************************************************************************************** PP

                  HHHHHHHHHTT--GC CS
  CPSase_L_D2 195 lvkeaakialgekLe 209
                  l+++aak+alg+ L+
   KOO21315.1 731 LAAVAAKLALGKLLP 745
                  ***********9887 PP

  == domain 2  score: 88.7 bits;  conditional E-value: 2.5e-28
                   SHHHHHHHHHHTT-BBSSEECSSBSSHHHHHHHHHHH-SSEEEEETTCCTTTTEEEESSHHHHHHHHHHHHHHHHHHHSTS-EEEEE--SSSEEEE CS
  CPSase_L_D2    1 DkesakealkkinvpvvpssaapvetleealaiakeigyPviikaafglGGkGmrvarneeelaelvkkalaeakaafgnkqvlvekslkgpkeiE 96  
                   D+++++++ + ++++  +      ++ e+ala+ +++gyP+++++++ l G  m va++++el++ +  a + +    g+k v v k++++ +ei+
   KOO21315.1 1081 DRNKFSALCDSVGIDQPKWRML--SSNEDALAFCEDVGYPCLVRPSYVLSGAAMNVAYSKDELTAFLDLAGEVS----GDKPVVVSKFIENAREID 1170
                   7888888888888887777666..99************************************************....8***************** PP

                   EEEEEETTS-EEEEEEEEECCEC..TCCCCEEEES-SS--HHHHHHHHHHHHHHHHHHT-EEEEEEEEEEETTTTEEEEEEEESS--CCHHHHHHH CS
  CPSase_L_D2   97 vevlrDakgnvitvcerenslql..rtqkvievAPsqtLtdeerqalreaavkvvrevgvvgagtveflldpkskeyyviEvNtRlsvesalaeka 190 
                   v+ ++      ++ +  e + +   + ++   v P + L++++ +++ e + k++++++v+g  +++ +  + +++  viE N R s++ + ++k 
   KOO21315.1 1171 VDAVAQDGRILLH-AVSEHVENAgvHSGDATLVLPPRSLSAATLKKIDEITYKMAQALKVTGPFNMQLIATA-DGSVKVIETNLRASRSTPFSSKC 1264
                   **99865444444.44444444457*******************************************9997.*********************** PP

                   HS--HHHHHHHHHTT CS
  CPSase_L_D2  191 TGldlvkeaakialg 205 
                    G++ +++a +   g
   KOO21315.1 1265 LGVNFIETATRAMCG 1279
                   ********9997666 PP

>> CPSase_sm_chain  Carbamoyl-phosphate synthase small chain, CPSase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  168.2   0.0   4.5e-53   6.8e-50       2     128 .]      27     163 ..      26     163 .. 0.95

  Alignments for each domain:
  == domain 1  score: 168.2 bits;  conditional E-value: 4.5e-53
  CPSase_sm_chain   2 avLvLedGtvfeGksfg.akeavGEvvfnTgmtGYqeiltDpsYagqilvltypliGnyGvneedves.........ekikvaglvvrelseep 85 
                       +LvLedGt ++G sfg +++++GE+vf+Tgm+GY+e+ltDpsY+gqilv+typ +GnyGv ++++++         ++++v++l+v+++s+++
       KOO21315.1  27 GTLVLEDGTRLRGVSFGyEEDTAGELVFTTGMVGYPESLTDPSYRGQILVMTYPIVGNYGVPNDSIDKfglpqffesDRVQVSALIVADYSHHH 120
                      589**************87999***************************************77888888888888879**************** PP

  CPSase_sm_chain  86 snwraeesLsewlkeekipgisgvDTRaLtkklrekgamkgvi 128
                      s+w++++sLs+wl+e+++p+++g+DTR Ltkk+rekg++k++i
       KOO21315.1 121 SHWNSQRSLSQWLTEQRVPALYGLDTRLLTKKIREKGSLKARI 163
                      ***************************************9987 PP

>> GATase  Glutamine amidotransferase class-I
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  142.5   0.0   8.6e-45   1.3e-41       2     189 ..     209     391 ..     208     392 .. 0.95
   2 ?   -2.9   0.0       3.2   4.8e+03       4      35 ..    1331    1362 ..    1330    1371 .. 0.79

  Alignments for each domain:
  == domain 1  score: 142.5 bits;  conditional E-value: 8.6e-45
                 EEESSTSTHHHHHHHHHHTT-EEEEEETTSHHHHHHHTHHSTSEEEEEEESSCTT.TTTHHHHHHHHCT.......STS-EEEETHHHHHHHHHTTTEE CS
      GATase   2 liDnydsvtenlvhalvelgvkvevvpidasaeeilellknpdgilvsgGpgspg.vegkieaikeare.......nkiPiLGICLGmQllaiefgrkv 92 
                  iD++  ++ n+++al++++++v+++p+da+ +     l ++dg+++s+Gpg+p+ v+++i  ike+++       + +P++GICLG+Qll+ + g+++
  KOO21315.1 209 AIDCG--IKVNIIRALLQRDCEVTLLPWDAPLLPR---LAEADGVFLSNGPGDPSvVQKTIGHIKEVLDamssgkaKMKPVFGICLGNQLLGTAAGATT 302
                 699*9..***********************99999...78****************9999999999998888888899********************* PP

                 EEEECEEEEEEEEEEEETTTCGGTTTTSEEEEEEEEEEEEESGCHHHTTEEEEEEEETTEEEEEEEEETTTEEEESSBTTSTTSTTHHHHHHHHHHH CS
      GATase  93 vkekekehhggtmrlgddetallyglknevierhrHryevnpkelepaglevtakseddeelmeiiekknpfvgvQFHPEststpegpellfnflik 189
                 +k   ++++g+++++++     l ++ ++vi+ ++H+y+++    +p+g++ ++++ +d+++++i++k+np++  QFHPE++ +p ++++lf++++ 
  KOO21315.1 303 YKLP-FGNRGQNQPVTN-----LLND-KCVITPQNHGYALDA-TKLPEGWQPLFVNRNDGSNEGIMHKTNPWFTAQFHPEAKCGPSDTSFLFEQFVS 391
                 ****.************.....5555.8*************8.89************************************************9986 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 3.2
                  ESSTSTHHHHHHHHHHTT-EEEEEETTSHHHH CS
      GATase    4 Dnydsvtenlvhalvelgvkvevvpidasaee 35  
                  D+yd + ++l+  +++l     +v i+a   +
  KOO21315.1 1331 DVYDAFLKSLLSTGMKLPRLNILVSIQARERN 1362
                  99**************9988888887765444 PP

>> CPSase_L_D3  Carbamoyl-phosphate synthetase large chain, oligomerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  130.5   0.1   2.7e-41     4e-38       3     122 .]     836     955 ..     834     955 .. 0.96

  Alignments for each domain:
  == domain 1  score: 130.5 bits;  conditional E-value: 2.7e-41
  CPSase_L_D3   3 lkeptdeRifaiaealrrglsveeiheltkidpwFLekleelvelekelkkkkk.eldeellreakklGfsDkqiaelleeeeeeevrelrkklgilp 99 
                  l+ ++d+Ri+a+a a+++g+sv++i++ltkidpwFL+kl+++ +++k lk+ +  +l+++++ +akk GfsD+qia+ ++   e+++r++rk++gilp
   KOO21315.1 836 LRIANDQRIYALALAFEKGYSVDRIQSLTKIDPWFLYKLRRISDMNKILKEFTPaTLPATTMLQAKKSGFSDRQIADRTG-GLEKDIRKTRKAMGILP 932
                  67789*********************************************99888*********************9976.56678************ PP

  CPSase_L_D3 100 vykrvDtcAaeFeaetpYlYstY 122
                    k++Dt+AaeF+a t+YlY+tY
   KOO21315.1 933 FAKQIDTMAAEFPAATNYLYMTY 955
                  **********************9 PP

>> ATP-grasp  ATP-grasp domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.8   0.0   3.7e-08   5.6e-05       7     143 ..     557     698 ..     551     720 .. 0.82
   2 !   43.8   0.0   1.3e-14     2e-11       3     159 ..    1091    1253 ..    1089    1261 .. 0.91

  Alignments for each domain:
  == domain 1  score: 22.8 bits;  conditional E-value: 3.7e-08
                 -B-EEEEECCHHHHHHHHHHH-SCEEEEESSS-CTTTTEEEECTCCGHHCHHHHC..GTTCEEEEE----SEEEEEEEEEETTC-EEE--EEEEEEETT CS
   ATP-grasp   7 pvprflaveskeeleeaaeelglpvvvKarrlgydGkGqsvvrseedleqaleal..keekvivEefvpfekElsvlvvrsaeGetafypvvetvqedg 103
                 ++++  a ++ +++ ea +++g+p++v+ +  +  G G+ ++ ++++ e   +++  ++ +v+vE+     kE+   vvr+   +  ++  +e+    g
  KOO21315.1 557 RIAPSFACDTLAQAMEASKTIGFPCMVR-CAFALGGLGSAIIPDAAKFEAHCREAfaSSPQVLVEKSLYGWKEVEYEVVRDIADNCITVCNMENFDPLG 654
                 6777888999999***************.*********************9999988999*********************999999999999999888 PP

                 EEE...EEEECEE-SCH.HHHHHHHHHHHHHHHHTSSEEEEEEE CS
   ATP-grasp 104 ilr...lsvapaevsek.aqkkaeeiakkiveeLggvGvfavEl 143
                 +     +++ap++  ++ + +  +++a k+v++Lg+vG   +  
  KOO21315.1 655 VHTgdsIVIAPSQTLTDdEYHMLRTTAIKVVRHLGIVGECNIQY 698
                 8743337899988766615666777888**********777665 PP

  == domain 2  score: 43.8 bits;  conditional E-value: 1.3e-14
                  TTT--B-EEEEECCHHHHHHHHHHH-SCEEEEESSS-CTTTTEEEECTCCGHHCHHHHC....GTTCEEEEE----SEEEEEEEEEETTC-EEE--E CS
   ATP-grasp    3 klglpvprflaveskeeleeaaeelglpvvvKarrlgydGkGqsvvrseedleqaleal....keekvivEefvpfekElsvlvvrsaeGetafypv 95  
                  ++g+  p++ +++s+e++ +++e++g+p++v+ +    +G    v  s+++l  +l+ +    ++++v+v +f++  +E+ v +v +++G++   +v
  KOO21315.1 1091 SVGIDQPKWRMLSSNEDALAFCEDVGYPCLVR-PSYVLSGAAMNVAYSKDELTAFLDLAgevsGDKPVVVSKFIENAREIDVDAV-AQDGRILLHAV 1185
                  578999**************************.99999*******************99999999***************98666.789****9999 PP

                  EEEEEET....TEEEEEEECEE-SCHHHHHHHHHHHHHHHHHTSSEEEEEEEEEETTCTEEEEEEESS CS
   ATP-grasp   96 vetvqed....gilrlsvapaevsekaqkkaeeiakkiveeLggvGvfavElFvledgellvnElapR 159 
                   e+v++     g+  l++ p ++s++ +kk+ ei+ k++++L + G f + l  ++dg++ v E   R
  KOO21315.1 1186 SEHVENAgvhsGDATLVLPPRSLSAATLKKIDEITYKMAQALKVTGPFNMQLIATADGSVKVIETNLR 1253
                  99999761111567899******************************************999998777 PP

>> Dala_Dala_lig_C  D-ala D-ala ligase C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.2   0.0   2.7e-08     4e-05      30     174 ..     572     714 ..     556     723 .. 0.86
   2 !   38.7   0.0   4.8e-13   7.2e-10       2     173 ..    1089    1251 ..    1088    1254 .. 0.91

  Alignments for each domain:
  == domain 1  score: 23.2 bits;  conditional E-value: 2.7e-08
                      HHHHHC-SSEEEEESSSSTTTTEEEESSGGGHHHHHHHHHTT-SCEEEEE--.ESEEEEEEEEETSSCEEEEEEEEE-SSSSS-HHHHHC.TT- CS
  Dala_Dala_lig_C  30 kveeelgypvfVKpareGSSvGvskveseeelkeaieeafkydekvlvEeai.egreievavlgneklevsevgeivvkkgfydyeakysddka 122
                      +  +++g+p++V+ a +   +G + +  ++++++  +eaf    +vlvE+ +   +e+e  v+ +    + +++ +  + + +d    +++d++
       KOO21315.1 572 EASKTIGFPCMVRCAFALGGLGSAIIPDAAKFEAHCREAFASSPQVLVEKSLyGWKEVEYEVVRDI---ADNCITV-CNMENFDPLGVHTGDSI 661
                      566899**********999*********************************899*********43...3344433.34455677777788999 PP

                      EEESS----HHHHHHHHHHHHHHHHHTT--SEEEEEEEE.ETTTEEEEEEEES CS
  Dala_Dala_lig_C 123 qlevpaklekeveekiqelalkaykaldlrGlaRvDffl.teegeivlnEvNt 174
                       +    +l++++++ ++++a+k+ + l++ G + + + l   +++  + EvN+
       KOO21315.1 662 VIAPSQTLTDDEYHMLRTTAIKVVRHLGIVGECNIQYALdPLSQDYCIIEVNP 714
                      999999*********************************44577788999996 PP

  == domain 2  score: 38.7 bits;  conditional E-value: 4.8e-13
                       HHHTT--B--EEEEETTHHCH-H-HHHHHHHHHC-SSEEEEESSSSTTTTEEEESSGGGHHHHHHHHHTT..-SCEEEEE--.ESEEEEE.E CS
  Dala_Dala_lig_C    2 lkaaGlpvvpyvvlekeeakeekkellekveeelgypvfVKpareGSSvGvskveseeelkeaieeafky..dekvlvEeai.egreiev.a 89  
                       + ++G+ ++++ +l ++e   +        +e +gyp++V+p+   S   ++ + s++el+++++ a +   d+ v+v ++i ++rei+v a
       KOO21315.1 1089 CDSVGIDQPKWRMLSSNEDALAF-------CEDVGYPCLVRPSYVLSGAAMNVAYSKDELTAFLDLAGEVsgDKPVVVSKFIeNAREIDVdA 1173
                       67889999999999888777766.......99**********************************976544999*******99******67 PP

                       EEETSSCEEEEEEEEE-SSSSS-HHHHHC.TT-EEESS----HHHHHHHHHHHHHHHHHTT--SEEEEEEEEETTTEEEEEEEE CS
  Dala_Dala_lig_C   90 vlgneklevsevgeivvkkgfydyeakysddkaqlevpaklekeveekiqelalkaykaldlrGlaRvDfflteegeivlnEvN 173 
                       v ++++   + v e+v + g+       s+d++ +  p +l++++ +ki e+  k+ +al+++G   + ++ t++g++ + E N
       KOO21315.1 1174 VAQDGRILLHAVSEHVENAGVH------SGDATLVLPPRSLSAATLKKIDEITYKMAQALKVTGPFNMQLIATADGSVKVIETN 1251
                       888999999*******999986......567788999********************************************999 PP

>> MGS  MGS-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.5   0.0   6.9e-18     1e-14       3      95 .]    1366    1456 ..    1364    1456 .. 0.92

  Alignments for each domain:
  == domain 1  score: 54.5 bits;  conditional E-value: 6.9e-18
                  HHHHHHHHHTTCEEEEEHHHHHHHHHTT--EEECCCCHSTGSGGTHCHHHHHHHHTTSCCEEEEE--THHHHHHCHHHHHHHHHHHTTSHEES CS
         MGS    3 velakklkelgfellATgGTakllkeagipvtevvektgegerlggrveildaikngeidlvintlypfkatvakdgykirraaenidIplpt 95  
                  ++  k l++lg++l+AT+ Ta++lk++g+pvt+v+    + + +  +  i d i+ g+i+lv ++ ++f+++    +y+irr+a+++++pl+t
  KOO21315.1 1366 LPTLKTLSKLGYQLYATEQTAEFLKKEGLPVTRVNYADPSATTPI-QNCIDDYISRGDIHLVLMFSNQFSERLL-LNYAIRRLAVDYGVPLIT 1456
                  67889*************************999998888887777.446************************8.9***************98 PP

>> ATPgrasp_Ter  ATP-grasp in the biosynthetic pathway with Ter operon
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.8   0.0   7.1e-07    0.0011      50     112 ..     678     746 ..     665     760 .. 0.76
   2 !   29.6   0.0   3.1e-10   4.6e-07       4     114 ..    1156    1284 ..    1154    1299 .. 0.80
   3 ?   -3.1   0.0       4.1   6.1e+03      61      76 ..    1349    1364 ..    1340    1368 .. 0.81
   4 ?   -1.5   0.0       1.3     2e+03      52      73 ..    1442    1463 ..    1432    1477 .. 0.74

  Alignments for each domain:
  == domain 1  score: 18.8 bits;  conditional E-value: 7.1e-07
  ATPgrasp_Ter  50 ielaerlaeefgldglvnvQvrededg..pkLLEiNpRasGGlg.ysalaGvnlpylalklllgl...e 112
                      a ++++++g+ g  n+Q+  d     ++++E+NpR s      s ++G  l+ +a+kl+lg+   +
    KOO21315.1 678 RTTAIKVVRHLGIVGECNIQYALDPLSqdYCIIEVNPRLSRSSAlASKATGYPLAAVAAKLALGKllpD 746
                   467999***************99964335**********96555156777**************74432 PP

  == domain 2  score: 29.6 bits;  conditional E-value: 3.1e-10
  ATPgrasp_Ter    4 allvmeyLeg.pEySvDvlaekgevl.aavpRrKekgglq.............elekdeelielaerlaeefgldglvnvQvrededg.pkLLEi 82  
                    +++v +++e+  E+ vD +a++g++l  av    e+ g++             +  + +++ e++ ++a++++++g +n+Q+  ++dg  k++E 
    KOO21315.1 1156 PVVVSKFIENaREIDVDAVAQDGRILlHAVSEHVENAGVHsgdatlvlpprslSAATLKKIDEITYKMAQALKVTGPFNMQLIATADGsVKVIET 1250
                    67888888873599999999999977467777777555555667788888855555667888999****************************** PP

  ATPgrasp_Ter   83 NpRasGGlgysala.Gvnlpylalklllgl.ete 114 
                    N Ras  +  s  + Gvn+++ a +++ g+ + +
    KOO21315.1 1251 NLRASRSTPFSSKClGVNFIETATRAMCGTeKLV 1284
                    **********99999***********99974333 PP

  == domain 3  score: -3.1 bits;  conditional E-value: 4.1
  ATPgrasp_Ter   61 gldglvnvQvrededg 76  
                    +l+ lv++Q re++++
    KOO21315.1 1349 RLNILVSIQARERNEK 1364
                    6899999***998876 PP

  == domain 4  score: -1.5 bits;  conditional E-value: 1.3
  ATPgrasp_Ter   52 laerlaeefgldglvnvQvred 73  
                    + +rla  +g+  ++n+Qv + 
    KOO21315.1 1442 AIRRLAVDYGVPLITNIQVAQL 1463
                    56899999**********9654 PP

>> Peptidase_C26  Peptidase C26
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.4   0.1   1.6e-05     0.023     103     128 ..     279     304 ..     268     306 .. 0.88
   2 ?    4.2   0.0     0.022        32     171     216 .]     328     374 ..     309     374 .. 0.78

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 1.6e-05
  Peptidase_C26 103 ergvPilgiCrGlqllnvalGGtlyq 128
                    ++ +P++giC+G qll  a G t+y+
     KOO21315.1 279 AKMKPVFGICLGNQLLGTAAGATTYK 304
                    6789*****************99985 PP

  == domain 2  score: 4.2 bits;  conditional E-value: 0.022
  Peptidase_C26 171 nslHhqaike..laeelrveAvae.DgviEaieseeakafvlgvQwHPE 216
                       H  a++   l e+++   v + Dg  E i +++++   +  Q+HPE
     KOO21315.1 328 PQNHGYALDAtkLPEGWQPLFVNRnDGSNEGIMHKTNP--WFTAQFHPE 374
                    5567777764449999*99999998**********966..6678****9 PP

>> ATP-grasp_3  ATP-grasp domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   0.00019      0.29     118     159 ..     675     717 ..     638     719 .. 0.85
   2 ?    1.0   0.0      0.26   3.9e+02      27     157 ..    1112    1253 ..    1081    1257 .. 0.68

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00019
                  HHHHHHHHHHHTTSTT--EEEEEEEEESS...SEEEEEEESS-- CS
  ATP-grasp_3 118 eevvelaeevvekleglaGyvGvDlvlkd..eepyviEvNPRlt 159
                  + ++++a +vv++l g++G   +   l    ++ ++iEvNPRl 
   KOO21315.1 675 HMLRTTAIKVVRHL-GIVGECNIQYALDPlsQDYCIIEVNPRLS 717
                  55788999******.9999999999877776799********95 PP

  == domain 2  score: 1.0 bits;  conditional E-value: 0.26
                   SS--SSSEEEEESS-------B--SS--TTE...............EEEE---.SEEEEEEEEE.SSSEEEEEEEEEEEET....TEEEEEEES-- CS
  ATP-grasp_3   27 leeeekklvvKprdGaggesvrvveekeeaeaaieeve........lvqefie.GkplSvsllsdgekvlvlavnrqliekaekefvyaGnvtpie 113 
                   +e + +++ v p++   g ++ v+  k+e++a+++           +v++fie  +++ v+++++  ++l+ av++ + +      v +G  t + 
   KOO21315.1 1112 CEDVGYPCLVRPSYVLSGAAMNVAYSKDELTAFLDLAGevsgdkpvVVSKFIEnAREIDVDAVAQDGRILLHAVSEHVENA----GVHSGDATLVL 1203
                   455678888888888888888888888888887775556778888899999984589999999988777766666665544....55555554332 PP

                   --H......HHHHHHHHHHHHTTSTT--EEEEEEEEESS..SEEEEEEESS CS
  ATP-grasp_3  114 tel......keevvelaeevvekleglaGyvGvDlvlkd.eepyviEvNPR 157 
                     +       +++ e+  ++ ++l ++ G +   l+ +  +   viE N R
   KOO21315.1 1204 PPRslsaatLKKIDEITYKMAQAL-KVTGPFNMQLIATAdGSVKVIETNLR 1253
                   211111222456666677777777.77777777777554366777777766 PP

>> RimK  RimK-like ATP-grasp domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.0   2.4e-05     0.036       2      98 ..    1080    1179 ..    1079    1271 .. 0.82

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 2.4e-05
                  H-HHHHHHHHHHTT-----EEEESS-S-HHHHHHTT-.-SSEEEEE-TTTT--EEEEE-SHHHHHHHHHH.....GGG--EEEEE--SS-SEEEEEE CS
        RimK    2 rdKlkslklLakakikvpntalardeedaekliekiklrfPvvvKsvegsqGikvvlakkeqklkqvlea.....lkeailvqeyieeaenediRvl 93  
                  +d+ k  +l    +i+ p+ ++  ++eda ++ e +  + P +v+ ++   G  + +a  +++l   l+       ++ ++v ++ie+a + d+  +
  KOO21315.1 1080 EDRNKFSALCDSVGIDQPKWRMLSSNEDALAFCEDV--GYPCLVRPSYVLSGAAMNVAYSKDELTAFLDLagevsGDKPVVVSKFIENAREIDVDAV 1174
                  67777778888899**********************..69***************************9976676667778*********99998776 PP

                  EETTE CS
        RimK   94 vvdde 98  
                    d+ 
  KOO21315.1 1175 AQDGR 1179
                  65555 PP

>> CoA_binding_2  CoA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.7   0.0    0.0016       2.4      15      88 ..     439     506 ..     430     536 .. 0.70
   2 ?   -0.7   0.0       1.3   1.9e+03      18      62 ..    1384    1429 ..    1381    1445 .. 0.68

  Alignments for each domain:
  == domain 1  score: 8.7 bits;  conditional E-value: 0.0016
                    HHHHHHHHHHHHT--EEEESSS-SEETTEES----T.....T--EEEE-S-HHHHGGGHHHH.HHH--SEEEE-TT CS
  CoA_binding_2  15 fgykvlryllehglpvvpVnpkeeeilgekvyaslaed.pepvdlvdvftppeatpeivkea.lalgakavwlqpg 88 
                     g ++++ l+e+gl+v+ +np+  +++      +++ + ++p d v ++    +tpe+v+e+ +++++++++l  g
     KOO21315.1 439 SGSQAIKALKEEGLEVILINPNIASVQT-----NVDGQgQSPADKVYLL---PVTPEYVEEViKRERPEGIILSMG 506
                    578999****************988776.....2222224567776666...488888888844446888877766 PP

  == domain 2  score: -0.7 bits;  conditional E-value: 1.3
                     HHHHHHHHHT--EEEESSS-SEETT..EES----T....T--EEEE- CS
  CoA_binding_2   18 kvlryllehglpvvpVnpkeeeilg..ekvyaslaedpepvdlvdvf 62  
                     + +++l+++glpv+ Vn   ++     ++++ +   + ++++lv +f
     KOO21315.1 1384 QTAEFLKKEGLPVTRVNYADPSATTpiQNCIDDYI-SRGDIHLVLMF 1429
                     56899999********9887554331133444444.35666666666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1496 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       362  (0.0201908); expected 358.6 (0.02)
Passed bias filter:                      358  (0.0199677); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.86u 0.28s 00:00:01.14 Elapsed: 00:00:00.47
# Mc/sec: 9559.24
//
Query:       KOO21316.1  [L=180]
Description: RNA exonuclease 4 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.5e-10   40.0   0.0    8.3e-10   39.5   0.0    1.3  1  RNase_T   Exonuclease


Domain annotation for each model (and alignments):
>> RNase_T  Exonuclease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.5   0.0   4.6e-14   8.3e-10      28     163 ..      20     145 ..       5     147 .. 0.80

  Alignments for each domain:
  == domain 1  score: 39.5 bits;  conditional E-value: 4.6e-14
                 TTCCEEEEEEEEEEEHSSHCSSSHHHHHHHHHCHHHHHTCEBHHHHHHHHHHHHHHHTCCCETTTCEEEESSHHHHHHHHHHHHHHHHHCSEHCECHHH CS
     RNase_T  28 ggeneigetfhfyvkptelakltdecteftgitqemldeapsfkevleefkellrklallvahnaafdvgflraadkrilkkevpkrnqfldtlildka 126
                 ++   + + + +y kpt++  +td+ t ++gi +++l++apsf++v +e+k ll  ++++v+h        l +++  ++    p r+   dt++ +++
  KOO21316.1  20 NEA--GNQVYFSYAKPTKP--VTDYRTWVSGIEPAHLRDAPSFNTVQKEVKHLLA-GHVIVGHS-------LEHDFGALGFS--PPRHMCRDTAHDVRR 104
                 444..5677789*******..**********************************.99999988.......55555555544..236666666666666 PP

                 HHHHHHC.HHHHHHHHHTTCHSSSS...TSSHHHHHHHHHH CS
     RNase_T 127 tlkelar.tsldklaeklgleedgr...aHrAldDaeatak 163
                  l++  r ++l+ + ++++   ++     H+ l+Da+a++ 
  KOO21316.1 105 LLSRGGRpRKLRHITWEFLGLVIQDsadGHSPLEDAQAALF 145
                 66666666799999999999888888888********9875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (180 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       359  (0.0200234); expected 358.6 (0.02)
Passed bias filter:                      276  (0.0153941); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.24s 00:00:00.63 Elapsed: 00:00:00.40
# Mc/sec: 1365.81
//
Query:       KOO21317.1  [L=533]
Description: hypothetical protein Ctob_000151 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
     0.0038   17.0   0.0     0.0069   16.2   0.0    1.3  1  2OG-Fe_Oxy_2  2OG-Fe dioxygenase


Domain annotation for each model (and alignments):
>> 2OG-Fe_Oxy_2  2OG-Fe dioxygenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.0   3.9e-07    0.0069      32     116 ..     184     268 ..     174     269 .. 0.86

  Alignments for each domain:
  == domain 1  score: 16.2 bits;  conditional E-value: 3.9e-07
                   EEEE-----EEEESSTT-S.S-CEEE---B--HHHHTS.HHHHHHHHHHHHHHHCCS--G.EEEEEEEEEEETT.TS-B--STTSSB CS
  2OG-Fe_Oxy_2  32 slerlphqpfaqskeynpl.dggieReFeeledellqn.pllqallaakaqlfeqleskqrweievhqiRieatpdqpgeptPeGvH 116
                   +l ++ph++ +q++  +p  +++ieR+Fe+  +e+l+n + + a+   + +l++ + ++    i v ++ ie +++ +g+p  +G+H
    KOO21317.1 184 KLYEVPHEKITQKQGLDPAsQTNIERQFEQRMPEVLKNiSQVPAIHPRDNNLYATACTD--GTIVVKNFHIEMQHQVIGQPCISGLH 268
                   78899**************9*********987777776367888888899988888887..699999******************** PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (533 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       691  (0.0385409); expected 358.6 (0.02)
Passed bias filter:                      512  (0.0285571); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.56u 0.25s 00:00:00.81 Elapsed: 00:00:00.41
# Mc/sec: 3949.23
//
Query:       KOO21318.1  [L=266]
Description: hypothetical protein Ctob_000152 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      0.002   18.1   0.2       0.68   10.2   0.0    3.1  2  TPR_2     Tetratricopeptide repeat
  ------ inclusion threshold ------
      0.083   12.6   0.3          7    6.4   0.0    2.4  2  TPR_11    TPR repeat
       0.21   12.5   0.2       0.21   12.5   0.2    5.0  5  TPR_14    Tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> TPR_2  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.8   0.0    0.0062        37      18      33 ..     190     205 ..     189     206 .. 0.90
   2 !   10.2   0.0   0.00011      0.68       2      32 ..     208     238 ..     207     240 .. 0.90

  Alignments for each domain:
  == domain 1  score: 4.8 bits;  conditional E-value: 0.0062
       TPR_2  18 eeAleafekAleldPn 33 
                 ++A+e++++A +l+P 
  KOO21318.1 190 AQAVEWLRRATQLAPY 205
                 58************96 PP

  == domain 2  score: 10.2 bits;  conditional E-value: 0.00011
       TPR_2   2 ealynlGlayyklgdyeeAleafekAleldP 32 
                  a+ +lG+ +++ +d + Al+a+++A    P
  KOO21318.1 208 FAWVELGDMLRAGNDAKGALHAYNEARIRHP 238
                 69************************87666 PP

>> TPR_11  TPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.4   0.0    0.0012         7      12      35 ..     191     214 ..     189     215 .. 0.90
   2 ?    5.7   0.1     0.002        12       1      20 [.     214     233 ..     214     233 .. 0.98

  Alignments for each domain:
  == domain 1  score: 6.4 bits;  conditional E-value: 0.0012
      TPR_11  12 eAieaYkkAlkldPdnaeayynLG 35 
                 +A+e++++A +l P ++ a+ +LG
  KOO21318.1 191 QAVEWLRRATQLAPYDVFAWVELG 214
                 8*************9999998888 PP

  == domain 2  score: 5.7 bits;  conditional E-value: 0.002
      TPR_11   1 GdayyeqGkyeeAieaYkkA 20 
                 Gd++++ ++ ++A+ aY++A
  KOO21318.1 214 GDMLRAGNDAKGALHAYNEA 233
                 9*****************99 PP

>> TPR_14  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.1       1.1   6.8e+03      30      42 ..      16      28 ..       8      40 .. 0.66
   2 ?   -1.8   2.9       1.3   7.9e+03      23      34 ..      97     108 ..      63     121 .. 0.61
   3 ?    6.9   2.6    0.0021        13       5      43 ..     140     178 ..     136     179 .. 0.90
   4 ?   12.5   0.2   3.5e-05      0.21      18      43 ..     190     215 ..     186     216 .. 0.93
   5 ?    7.3   0.2    0.0017        10       3      38 ..     209     244 ..     208     248 .. 0.88

  Alignments for each domain:
  == domain 1  score: -1.5 bits;  conditional E-value: 1.1
      TPR_14 30 laPddaeawllla 42
                +a + a+aw+ + 
  KOO21318.1 16 AAVQRAAAWRVMS 28
                5555666666654 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 1.3
      TPR_14  23 llrralalaPdd 34 
                    +al++aP++
  KOO21318.1  97 EDADALRHAPAQ 108
                 334455666654 PP

  == domain 3  score: 6.9 bits;  conditional E-value: 0.0021
      TPR_14   5 lalaeallalGdpdeAiallrralalaPddaeawlllaq 43 
                 ++la+a++a  + + A+++  ++ +l P+  +aw++la 
  KOO21318.1 140 ARLAAAERAHANGKNAETAVLAITQLLPGWSWAWRRLAT 178
                 578999999999999**********************97 PP

  == domain 4  score: 12.5 bits;  conditional E-value: 3.5e-05
      TPR_14  18 deAiallrralalaPddaeawlllaq 43 
                 ++A++ lrra +laP d  aw +l++
  KOO21318.1 190 AQAVEWLRRATQLAPYDVFAWVELGD 215
                 58*********************996 PP

  == domain 5  score: 7.3 bits;  conditional E-value: 0.0017
      TPR_14   3 allalaeallalGdpdeAiallrralalaPddaeaw 38 
                 a+ +l++ l+a  d ++A+ ++++a  ++P+  +++
  KOO21318.1 209 AWVELGDMLRAGNDAKGALHAYNEARIRHPTLKALR 244
                 899**********************99999965555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (266 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       731  (0.0407719); expected 358.6 (0.02)
Passed bias filter:                      346  (0.0192983); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.41u 0.24s 00:00:00.64 Elapsed: 00:00:00.38
# Mc/sec: 2115.78
//
Query:       KOO21319.1  [L=173]
Description: 3-oxo-5-alpha-steroid 4-dehydrogenase 1 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    8.8e-51  171.8   0.0      1e-50  171.6   0.0    1.0  1  Steroid_dh  3-oxo-5-alpha-steroid 4-dehydrogenase
    8.2e-05   22.2   0.1     0.0001   21.9   0.1    1.2  1  DUF1295     Protein of unknown function (DUF1295)


Domain annotation for each model (and alignments):
>> Steroid_dh  3-oxo-5-alpha-steroid 4-dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  171.6   0.0   1.2e-54     1e-50       2     150 .]      23     173 .]      22     173 .] 0.96

  Alignments for each domain:
  == domain 1  score: 171.6 bits;  conditional E-value: 1.2e-54
  Steroid_dh   2 kmpllivakavlfcvlnGllqarylsyyqpy.aedylkkdrlllgivlfvlgmliniksdiiLrelrkegetkykiprgglFelvsapnyfgEilewig 99 
                 +mp+  ++ a++f+ +nG++q+r +s  ++   +++    +l+ g++l++lg+ in +sd  Lr lrk+get+y++p gg Fe+vs++nyfgEi+ew+g
  KOO21319.1  23 RMPVGLCLLATAFVAFNGYVQGRAWSALEVLpVDSMGSAVCLVAGTGLWALGLGINLHSDAVLRGLRKPGETGYRVPHGGAFEYVSCANYFGEIVEWCG 121
                 69*********************99999888789999999*********************************************************** PP

  Steroid_dh 100 yalvtk.slaalaFalftvlnltvraaahhkwykkkfekYpksRkiliPfvf 150
                 yal++   l+a+aFa+ft++nl++ra +hh+wyk+kf++Yp +R++++Pfv+
  KOO21319.1 122 YALASGgRLPAVAFAFFTFANLAPRAHQHHAWYKQKFDDYPSHRRAVLPFVL 173
                 ****85369*****************************************96 PP

>> DUF1295  Protein of unknown function (DUF1295)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.9   0.1   1.2e-08    0.0001     121     189 ..      64     132 ..      28     143 .. 0.86

  Alignments for each domain:
  == domain 1  score: 21.9 bits;  conditional E-value: 1.2e-08
     DUF1295 121 dviglalwlvgivlealaDqQlsafkkdpankgkvldsGLwrysRHPNYfgealiWwglflialealeg 189
                  v+g+ lw +g++++  +D+ l   +k  +   +v + G ++y    NYfge++ W+g+ l++   l  
  KOO21319.1  64 LVAGTGLWALGLGINLHSDAVLRGLRKPGETGYRVPHGGAFEYVSCANYFGEIVEWCGYALASGGRLPA 132
                 5789999*****************9987776666**************************998776555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (173 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       257  (0.0143343); expected 358.6 (0.02)
Passed bias filter:                      197  (0.0109878); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.41u 0.24s 00:00:00.64 Elapsed: 00:00:00.42
# Mc/sec: 1223.51
//
Query:       KOO21320.1  [L=1306]
Description: DNA repair-recombination protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.5e-31  110.5   0.1    1.5e-31  110.5   0.1    7.4  3  AAA_23        AAA domain
    1.9e-08   34.4   0.4    1.9e-08   34.4   0.4    3.8  3  AAA_15        AAA ATPase domain
    4.4e-06   26.7   9.7     0.0015   18.4   0.1    3.3  3  AAA_21        AAA domain, putative AbiEii toxin, Type IV TA s
     0.0063   16.7  14.3     0.0063   16.7  14.3   10.4 11  TMF_TATA_bd   TATA element modulatory factor 1 TATA binding
     0.0078   16.7   0.0     0.0078   16.7   0.0    6.2  3  ABC_tran      ABC transporter
     0.0081   15.9   0.0      0.019   14.7   0.0    1.5  1  AAA_29        P-loop containing region of AAA domain
  ------ inclusion threshold ------
      0.072   13.4   0.0      0.072   13.4   0.0    5.2  6  AAA_22        AAA domain
       0.11   11.2   0.0       0.11   11.2   0.0    7.7  7  AAA_13        AAA domain
        6.6    6.1  42.8    1.1e+02    2.1  42.8    2.6  1  SMC_N         RecF/RecN/SMC N terminal domain


Domain annotation for each model (and alignments):
>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  110.5   0.1   7.5e-35   1.5e-31       1     183 [.       6     238 ..       6     275 .. 0.80
   2 ?  -70.4  84.9         9   1.8e+04     153     197 ..     800     932 ..     251     935 .. 0.76
   3 ?   -9.4  12.5         9   1.8e+04     139     184 ..     991    1070 ..     937    1146 .. 0.53

  Alignments for each domain:
  == domain 1  score: 110.5 bits;  conditional E-value: 7.5e-35
      AAA_23   1 kLkienfrsf...rdqeidFskgltlItGpNGaGKTTildAiklaLygetprlsrksgrgfeksdveiesegkvkayveltfenkdgrytrsiererel 96 
                 k++i+++rsf   + q i+F k+ltlI+G+NG+GKTT ++++k a++g+ p++ r  ++ ++ +d++++++ +vka+++l+f++ +gr    ++r+++l
  KOO21320.1   6 KMSIRGIRSFsptETQVIEFYKPLTLIVGKNGSGKTTTIECLKMATTGDLPPNCR--NGQAFINDPNVHNSSEVKAQIKLKFTTATGRP-AVCTRSFSL 101
                 689*******8866677********************************999988..5679**************************95.677778888 PP

      AAA_23  97 skkkgkttkka...klellei...........deleqfisellgskkiilnlilflgqer.feefelkdkke........................... 153
                  +k +k+ +ka   +l+ +++           ++l+++++e ++++ + l+ ++f +qe+  +++++ + ++                           
  KOO21320.1 102 VQKTTKKEYKAfeaALQTIDEkgdktslsykcADLNKLVPEMMHVSTAVLDSVIFVHQEDaCWPLQEDKVLKdrfdaifaatnytkaldaikvykadka 200
                 888877777763333444444777777888899999**************6666666665577777633333344488888888888888888888888 PP

      AAA_23 154 ........rleelekeleeledekkllekleqekekek 183
                         +le le++l+e++  +++l+ +e++ke  +
  KOO21320.1 201 kdikvlaaELETLETKLNEANRLREELRSNEERKEMLE 238
                 88888888888888888888888888888888877666 PP

  == domain 2  score: -70.4 bits;  conditional E-value: 9
      AAA_23 153 e.......................................................................................rleelekelee 164
                 +                                                                                       +l el++  ++
  KOO21320.1 800 QaareardladkardlksdvdhlnhlfrdwtkeqtevgtiqsgmqsgmgtlhrrrdvveaekeeteselerlerqidkddlalrqkeaELSELRTRRDQ 898
                 123333333333333444444444444444444444444444444444444442222222222222222222222223333222222244444444444 PP

      AAA_23 165 ledekkllekl.eqekekekeleeleeeleeilk 197
                 +e+e  +l ++ e++ +  ++l+e+++++ +++ 
  KOO21320.1 899 KENEVTKLSAEcERRRDADARLTEVKQQMAQLQR 932
                 4444444443355666666677777777777665 PP

  == domain 3  score: -9.4 bits;  conditional E-value: 9
      AAA_23  139 gqer.......................feefelkdkkerleelekeleeledekkllekl........eqekekek.........e 184 
                  +q++                       +++++lk+++ r + l ++l+ +e+ + ++ ++        e      +          
  KOO21320.1  991 AQGSsssrkqllidcearvaethrvvtEKREKLKERQHRAALLHQKLQGQEQLRTQMLANlsqrevihE------NelersrlegS 1070
                  444433333333333333444444444334444444444444444444444433322222233333221......01111223332 PP

>> AAA_15  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.4   0.4   9.6e-12   1.9e-08       3     261 ..       4     345 ..       3     385 .. 0.60
   2 ?   -5.9   8.1         9   1.8e+04     112     254 ..     763     901 ..     626     942 .. 0.62
   3 !   13.9   3.0   1.6e-05     0.032     216     369 .]    1080    1267 ..    1011    1267 .. 0.78

  Alignments for each domain:
  == domain 1  score: 34.4 bits;  conditional E-value: 9.6e-12
      AAA_15   3 IkkikikNFRslkdveidlsee...ltvliGkNnsGKSsilealdlFlnnkekkn..kkvikiekedleifeniseskdikIdvef............. 83 
                 I+k++i+  Rs++ +e ++ e    lt+++GkN+sGK++ +e l+   + + + n  +     ++   + + ++s + + +I+++f             
  KOO21320.1   4 IDKMSIRGIRSFSPTETQVIEFykpLTLIVGKNGSGKTTTIECLKMATTGDLPPNcrN----GQAFINDPNVHNSSEVKAQIKLKFttatgrpavctrs 98 
                 7888899999999887555555555*******************66666555555554....4444445555666777777777777799********9 PP

      AAA_15  84 ......aek.ekakeyektlkskekkkadlllkkkesdlkktikdkklklkknelsdekisvekkkskkelpkekeeklekekeelkidkedlkklikk 175
                           ++ k +e +l++ ++k +++ l  k+ dl k++ + +    ++ + d+ i v+++ + + l + k  k   +     ++  ++ + ik 
  KOO21320.1  99 fslvqkT-TkKEYKAFEAALQTIDEKGDKTSLSYKCADLNKLVPEMMHV--STAVLDSVIFVHQEDACWPLQEDKVLKDRFDAIFAATNYTKALDAIKV 194
                 9998652.24677788888888888888888888888888877554444..678888888888888866666555555555555554444444444443 PP

      AAA_15 176 leeslkkee....................................elknvlksaiiklllisakRnvsdedsekkssllgklkekileealqekl.... 234
                 ++  + k+                                      + +   +a++  +  +++R v d++  + +++  +++e    + ++ k+    
  KOO21320.1 195 YKADKAKDIkvlaaeletletklneanrlreelrsneerkemleaAMAKCRAAAQEGKDRLPERRAVLDQFHRVHNEYQQAATEHNHASDAAGKAlqel 293
                 333222222333333333333333444444444444444445555445555555555555555555555444444444444444443333333334555 PP

      AAA_15 235 .........................eeelteklkeiqeklkeidkklaeelk 261
                                          + +++ +l+++ + + e++ +l+++++
  KOO21320.1 294 irqyggpleesdaelqeietsqgaaTVQMRTDLDKTRNQIGEMERELESDEQ 345
                 5666666666666666666666666666666667777777766666666655 PP

  == domain 2  score: -5.9 bits;  conditional E-value: 9
      AAA_15 112 esdlkktikdkklklkknelsdekisvekkkskkelpkekeeklekekeelkid.kedlkklikkleeslkkeeelknvlksaiiklllisakRnvsde 209
                  +d+ k++ ++k +l+  +       ++++ ++ +  k +   +  + ++   d k+d++ l   ++  +k++ e++ + +  +  + + + +R+v + 
  KOO21320.1 763 TQDIFKRKASEKPALE--QMLEAARADHERLKREHEAKQQAAREARDLADKARDlKSDVDHLNHLFRDWTKEQTEVGTIQSGMQSGMGTLHRRRDVVEA 859
                 3334444444444333..222222222222222222222222222222222222344444444444455555557777777777778888888888888 PP

      AAA_15 210 dsekkssllgklkekileealqekl....eeelteklkeiqeklkeidk 254
                 ++e+++s l++l ++i ++ l+ ++            +e+ +  +++++
  KOO21320.1 860 EKEETESELERLERQIDKDDLALRQkeaeL-------SELRTRRDQKEN 901
                 888888888888888888766655554442.......333333333222 PP

  == domain 3  score: 13.9 bits;  conditional E-value: 1.6e-05
      AAA_15  216 sllgklkekileealqekleeelteklkeiqeklkeidkklaeelk..........kilkkkidkikkfnykgkkneeieik............... 287 
                  s+ ++l++++++++ qe  + e+  ++k +q +++++  ++++  +           +++k i ++ +  ykg +   i+ik               
  KOO21320.1 1080 STRMQLQDQKFKKIDQE--HREKLIEFKTVQMAVDDLGRYYKALNAalmrfhetkmADVNKAITELWNKTYKGTDIDGITIKtenegetadgrrkqt 1174
                  33334444444443333..555666666777777777777755555888888888866666666666667777777777777777788889999999 PP

      AAA_15  288 .....ddeelplnknGsGvqrllllillileaekk..dekeeknvilliEEPEahLHpqaqkvlikllkelandnkt....QviitTHSphii 369 
                        + ++ l+++G  +  l++ +l  l ++    ++   +  il+++EP ++L   + ++l+ +l e+++  k+    Q+i+ TH + ++
  KOO21320.1 1175 yrvvmKKGDTQLDMRGRLIAFLISGVLASLVIRLAlaESFCINCGILALDEPTTNLDRPNIESLAAALNEIIKARKHqtnfQLIVITHDEEFV 1267
                  99*********************98888888888777888999********************************999**********99876 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.4   0.1   7.6e-07    0.0015       1      22 [.      29      50 ..      29      89 .. 0.82
   2 ?   -1.9   1.2       1.2   2.3e+03     104     165 ..     772     846 ..     754     915 .. 0.48
   3 !   13.3   0.3   2.8e-05     0.056     248     301 ..    1201    1266 ..    1191    1268 .. 0.75

  Alignments for each domain:
  == domain 1  score: 18.4 bits;  conditional E-value: 7.6e-07
      AAA_21  1 lnvliGpNgsGKSnLLdaldll 22
                l++++G+NgsGK++ +++l+++
  KOO21320.1 29 LTLIVGKNGSGKTTTIECLKMA 50
                69*****************988 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 1.2
      AAA_21 104 sleeedvfnpeargirggvsvfslkelsvsepndlqfgkaltditsrawsllllldglrke.............r 165
                 s++   +   ea +++  +  +++ ++  +  ++++  + + d++s+ + l++l++++ ke              
  KOO21320.1 772 SEKPALEQMLEAARADHERLKREHEAKQQAAREARDLADKARDLKSDVDHLNHLFRDWTKEqtevgtiqsgmqsG 846
                 444444444444444444444444444444444444444444444444444444444444444333333333333 PP

  == domain 3  score: 13.3 bits;  conditional E-value: 2.8e-05
      AAA_21  248 ltallralkkg.......sllliDEpEngLHPkllrrll....ell.kelsrngaQviltTHSpll 301 
                  l++l  +l  +       ++l++DEp ++L+   +++l+    e++  ++++++ Q+i+ TH+ ++
  KOO21320.1 1201 LASLVIRLALAesfcincGILALDEPTTNLDRPNIESLAaalnEIIkARKHQTNFQLIVITHDEEF 1266
                  4555555544467777779*************8888888666566686666689********9765 PP

>> TMF_TATA_bd  TATA element modulatory factor 1 TATA binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.6   0.1       6.2   1.2e+04      63      92 ..     107     125 ..     100     140 .. 0.57
   2 ?   -0.9   6.2      0.94   1.9e+03      17      63 ..     206     255 ..     194     276 .. 0.49
   3 ?    0.7   4.9       0.3     6e+02      12      91 ..     285     358 ..     274     368 .. 0.75
   4 ?    3.0  14.6     0.057   1.1e+02      13      81 ..     406     475 ..     398     501 .. 0.86
   5 ?   -0.3   7.3      0.62   1.2e+03      29      82 ..     510     563 ..     480     581 .. 0.67
   6 ?   -1.8   2.1       1.7   3.4e+03      57      91 ..     614     648 ..     583     657 .. 0.56
   7 ?   -0.3   0.3      0.59   1.2e+03      15      47 ..     673     705 ..     669     724 .. 0.84
   8 ?    2.4   5.6     0.091   1.8e+02       9      78 ..     755     824 ..     747     829 .. 0.86
   9 !   16.7  14.3   3.2e-06    0.0063      12      83 ..     866     937 ..     856     940 .. 0.92
  10 ?   -0.9   0.8      0.96   1.9e+03      66      96 ..     995    1025 ..     942    1040 .. 0.63
  11 ?   -3.4   4.8       5.7   1.1e+04       7      77 ..    1041    1115 ..    1035    1143 .. 0.61

  Alignments for each domain:
  == domain 1  score: -3.6 bits;  conditional E-value: 6.2
  TMF_TATA_bd  63 kkeleelekeleelqeryetlLellGeksE 92 
                  kke++             e++L+ + ek +
   KOO21320.1 107 KKEYKAF-----------EAALQTIDEKGD 125
                  3444444...........444444444443 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 0.94
  TMF_TATA_bd  17 lsseirrlEg...Elaslkeelerleaerdeareeivklmkeneelkelk 63 
                  l +e+  lE+   E + l+eel + e+ ++ +++ ++k  +  +e k+  
   KOO21320.1 206 LAAELETLETklnEANRLREELRSNEERKEMLEAAMAKCRAAAQEGKDRL 255
                  33333333321114455555555555555555555555555555544444 PP

  == domain 3  score: 0.7 bits;  conditional E-value: 0.3
  TMF_TATA_bd  12 qlverlsseirrlEgElaslkeelerleaerdeareeivklmkeneelkelkkeleelekeleelqeryetlLellGeks 91 
                     + l+  ir+  g l+++  el+++e+++ +a+   v++     +l+++ +++ e+e+ele+ ++r +++  ll + +
   KOO21320.1 285 AAGKALQELIRQYGGPLEESDAELQEIETSQGAAT---VQM---RTDLDKTRNQIGEMERELESDEQRRDSARGLLEQHK 358
                  55567888899999999988888888888887765...333...346677778899999999999999999998887755 PP

  == domain 4  score: 3.0 bits;  conditional E-value: 0.057
  TMF_TATA_bd  13 lverlsseirrlEgElaslkeelerl.eaerdeareeivklmkeneelkelkkeleelekeleelqerye 81 
                    ++l   ++++++El+ +kee e++ +++r +++++ ++l +  e+ + +++e ++l +++++l+er+e
   KOO21320.1 406 AADSLARVLHSRQSELTRAKEEQEQVrQTQRAKVQQQRLELEHGAEKANGKEREASSLLAKVRQLEERLE 475
                  56778999****************9835699*************************************86 PP

  == domain 5  score: -0.3 bits;  conditional E-value: 0.62
  TMF_TATA_bd  29 aslkeelerleaerdeareeivklmkeneelkelkkeleelekeleelqeryet 82 
                  +sl+e+l++  ++++++r+ + +l +e    +++ ++   l ++l+  +e+ e+
   KOO21320.1 510 SSLREDLANHRNQKRTVRDKLSRLAEELVLISAEGEKQGRLHRQLQLAKEKREK 563
                  466777777777777777777777777776666666666666666666666554 PP

  == domain 6  score: -1.8 bits;  conditional E-value: 1.7
  TMF_TATA_bd  57 eelkelkkeleelekeleelqeryetlLellGeks 91 
                  ++ +e+++ l++ +k+  e+q + e+l el  + +
   KOO21320.1 614 DKEREAAAALDKAQKKGFEVQAKTEQLRELVRKID 648
                  34444444455555555555555555555544433 PP

  == domain 7  score: -0.3 bits;  conditional E-value: 0.59
  TMF_TATA_bd  15 erlsseirrlEgElaslkeelerleaerdeare 47 
                    l+  +r++E++++ ++  le +e+ + +a++
   KOO21320.1 673 AALEEDVRKKEVDVQDSNGLLELMEKAKTKAES 705
                  568899999999999999999999999888865 PP

  == domain 8  score: 2.4 bits;  conditional E-value: 0.091
  TMF_TATA_bd   9 psvqlverlsseirrlEgElaslkeelerleaerdeareeivklmkeneelkelkkeleelekeleelqe 78 
                   ++qlve  +   +r+ +E+ +l++ le   a  +++++e  +  +   e ++l+++ ++l++ ++ l++
   KOO21320.1 755 RHQQLVELTQDIFKRKASEKPALEQMLEAARADHERLKREHEAKQQAAREARDLADKARDLKSDVDHLNH 824
                  5688999999999999999999999999999999999999999999999999999999999999998886 PP

  == domain 9  score: 16.7 bits;  conditional E-value: 3.2e-06
  TMF_TATA_bd  12 qlverlsseirrlEgElaslkeelerleaerdeareeivklmkeneelkelkkeleelekeleelqeryetl 83 
                  + +erl+ +i + +  l++ + el++l + rd+ ++e+ kl++e+e+ ++++++l+e+++++++lq++  +l
   KOO21320.1 866 SELERLERQIDKDDLALRQKEAELSELRTRRDQKENEVTKLSAECERRRDADARLTEVKQQMAQLQREAAEL 937
                  5689**************************************************************987765 PP

  == domain 10  score: -0.9 bits;  conditional E-value: 0.96
  TMF_TATA_bd   66 leelekeleelqeryetlLellGeksEeveE 96  
                   +++ ++ l + + r  ++  +  ek E+ +E
   KOO21320.1  995 SSSRKQLLIDCEARVAETHRVVTEKREKLKE 1025
                   2333344566777777777777777777666 PP

  == domain 11  score: -3.4 bits;  conditional E-value: 5.7
  TMF_TATA_bd    7 agpsvqlverlsse..irrlEgElaslkeelerleaerdeareeivklm.ke.neelkelkkeleelekeleelq 77  
                   ++  +q++ +ls++  i++ E E + l+ +l+++ a+  ++r ++ +   k+  +e +e+  e ++++  +++l 
   KOO21320.1 1041 EQLRTQMLANLSQRevIHENELERSRLEGSLSTIVAQITSTRMQLQDQKfKKiDQEHREKLIEFKTVQMAVDDLG 1115
                   566677888887644488888888887777666555544444444332212202333344445555555555555 PP

>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.0   3.9e-06    0.0078      13      96 ..      29     124 ..      25     139 .. 0.60
   2 ?   -7.6   8.8         9   1.8e+04      71      71 ..     447     447 ..     189     720 .. 0.75
   3 ?   -9.2  15.1         9   1.8e+04     116     136 ..    1207    1227 ..     698    1228 .. 0.93

  Alignments for each domain:
  == domain 1  score: 16.7 bits;  conditional E-value: 3.9e-06
                 EEEEEESTTSSHHHHHHHHTTSS--......SEEEEEETTCEGGGB-HHHCCHCEEEE-SS--S-TTSBHHHH........HHHTCHHHHHHHSTTGG CS
                 xxxxxxxxxxxxxxxxxxxxxxxxx......xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx........xxxxxxxxxxxxxxxxx RF
    ABC_tran  13 kvaivGenGaGKStLlkllagllkp......teGeilldgkdlkeqeleslrkeigvlpqepqlfpeltvren........esdeeiekalsklglke 96 
                 ++ ivG+nG+GK+t +++l   ++        +G+  +++ ++++ +  +++++i+  + +++  p +  r+         ++ + +e+al++++ k+
  KOO21320.1  29 LTLIVGKNGSGKTTTIECLKMATTGdlppncRNGQAFINDPNVHNSS--EVKAQIKLKFTTATGRPAVCTRSFslvqkttkKEYKAFEAALQTIDEKG 124
                 578**************998777666666888899888888888744..4444444444443333333333333343333222222555555555444 PP

  == domain 2  score: -7.6 bits;  conditional E-value: 9
                 - CS
                 x RF
    ABC_tran  71 f 71 
                  
  KOO21320.1 447 E 447
                 1 PP

  == domain 3  score: -9.2 bits;  conditional E-value: 9
                  HHHHHHHHHHTSSEEEEESTT CS
                  xxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  116 rvalarallkkpkllllDEpt 136 
                  r+ala++++ +  +l lDEpt
  KOO21320.1 1207 RLALAESFCINCGILALDEPT 1227
                  899999999999999999999 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   0.0   9.6e-06     0.019      15      44 ..      21      49 ..      15      56 .. 0.77

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 9.6e-06
      AAA_29 15 htieidlkgatlltGpsGsGKSTllDAiqa 44
                ++ie+  k  tl++G++GsGK+T +  +++
  KOO21320.1 21 QVIEFY-KPLTLIVGKNGSGKTTTIECLKM 49
                566665.337*************9977665 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.0   3.6e-05     0.072       4      70 ..      26      91 ..      23     126 .. 0.71
   2 ?   -1.2   0.4       1.1   2.2e+03      59     104 ..     222     269 ..     181     299 .. 0.56
   3 ?   -2.2   0.1       2.3   4.5e+03      55      90 ..     331     366 ..     265     374 .. 0.63
   4 ?   -1.7   0.8       1.6   3.3e+03      71     128 ..     787     841 ..     703     846 .. 0.57
   5 ?   -2.1   0.3       2.2   4.4e+03      59      85 ..    1018    1050 ..     962    1061 .. 0.53
   6 ?    0.5   0.1      0.35   6.9e+02      33     130 ..    1165    1262 ..    1157    1270 .. 0.62

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 3.6e-05
      AAA_22  4 tagilvvtGesGtGKTtllrrlleqldeeakaeeerpevvfvtlpsstsskdllrellralglelka 70
                ++ +++++G  G+GKTt+++ l++       + + r +++f++ p+  +s+++  ++  +++  + +
  KOO21320.1 26 YKPLTLIVGKNGSGKTTTIECLKMAT-TGDLPPNCRNGQAFINDPNVHNSSEVKAQIKLKFTTATGR 91
                57789******************987.3445555777888888888888888777777777655444 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 1.1
      AAA_22  59 ellralglelkaerlsseellealeqalrarav.......ielliiDEaqhlr 104
                 +l ++l      ++ +++e+lea    +ra+a         +  ++D ++++ 
  KOO21320.1 222 RLREELR-----SNEERKEMLEAAMAKCRAAAQegkdrlpERRAVLDQFHRVH 269
                 2222222.....23444555555555555544466667777777788888773 PP

  == domain 3  score: -2.2 bits;  conditional E-value: 2.3
      AAA_22  55 dllrellralglelkaerlsseell.ealeqalrara 90 
                 +   e+ r+l+++  + r+s + ll ++ +q ++++ 
  KOO21320.1 331 NQIGEMERELESDEQR-RDSARGLLeQHKAQEAHHKE 366
                 2235556666665555.77777777777777777665 PP

  == domain 4  score: -1.7 bits;  conditional E-value: 1.6
      AAA_22  71 erlsseellealeqalraravielliiDEaqhlr.seealeeL.rsllnlsrkgvqliLv 128
                    ++++  ea +qa+r++++    + D a  l    ++l++L r++ + +++ v  i  
  KOO21320.1 787 DHERLKREHEAKQQAAREARD----LADKARDLKsDVDHLNHLfRDWTK-EQTEVGTIQS 841
                 233333334455555555555....666666664336666666666655.5666655555 PP

  == domain 5  score: -2.1 bits;  conditional E-value: 2.2
      AAA_22   59 ellralglelka......erlsseellealeqa 85  
                  e  ++l++++++      + + +e+l++++  +
  KOO21320.1 1018 EKREKLKERQHRaallhqKLQGQEQLRTQMLAN 1050
                  222222222222444444455555555555444 PP

  == domain 6  score: 0.5 bits;  conditional E-value: 0.35
      AAA_22   33 akaeeerpevvfvtlpsstsskdllrellralglelkaerlsseellealeqalraravielliiDEaqh.lr..s....eealeeLrsllnlsrkg 122 
                  + a+ +r+++++v ++++ ++ d++ +l  +l ++  a   s+   l++ e  + +++    l +DE    l+  +    ++al+e+ +  + ++++
  KOO21320.1 1165 ETADGRRKQTYRVVMKKGDTQLDMRGRLIAFLISGVLA---SLVIRLALAESFCINCGI---LALDEPTTnLDrpNieslAAALNEIIKARK-HQTN 1254
                  44444777777777777777777777777777776666...444444555555555544...778887666765413446777777744444.6888 PP

      AAA_22  123 vqliLvGt 130 
                  +qli++ +
  KOO21320.1 1255 FQLIVITH 1262
                  88888765 PP

>> AAA_13  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   5.3e-05      0.11      16      54 ..      27      70 ..      11      90 .. 0.75
   2 ?   -4.1   9.9       2.2   4.4e+03     334     465 ..     110     281 ..      71     293 .. 0.58
   3 ?   -4.9  15.4       3.8   7.5e+03     283     452 ..     201     360 ..     167     382 .. 0.50
   4 ?   -8.2  14.3         9   1.8e+04     287     447 ..     413     576 ..     400     594 .. 0.41
   5 ?    4.8  16.5    0.0046       9.2     280     469 ..     632     828 ..     616     840 .. 0.75
   6 ?  -20.3  31.8         9   1.8e+04      91     220 ..     861     961 ..     854    1174 .. 0.48
   7 ?    1.4   0.0     0.049        97     528     580 ..    1219    1273 ..    1208    1302 .. 0.74

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 5.3e-05
      AAA_13 16 kriNliYGwNGaGKTtLSrllrslelgetepkfangsi.....e 54
                k   li G+NG+GKTt  + l+  ++g   p+  ng+      +
  KOO21320.1 27 KPLTLIVGKNGSGKTTTIECLKMATTGDLPPNCRNGQAfindpN 70
                5567999*********************9999999976344442 PP

  == domain 2  score: -4.1 bits;  conditional E-value: 2.2
      AAA_13 334 eeqLkglqraleaKrkepfksvelesvkaki.e.........................................sikklvaeineliakhNekvanlee 390
                  ++++++ + +++K ++ + s +  ++++ + e                                         + +k++++i+   a+  + ++ l++
  KOO21320.1 110 YKAFEAALQTIDEKGDKTSLSYKCADLNKLVpEmmhvstavldsvifvhqedacwplqedkvlkdrfdaifaatNYTKALDAIKVYKADKAKDIKVLAA 208
                 444555555555555555555555555555532333444444455555555555555555555555555555556666666666666666666666777 PP

      AAA_13 391 ekeeakkklelhlveeleseldeykkkykklekaieklekelkeeeaelkkleeeikeLekqlrdekpaaeeink 465
                 e e++++kl    +++l++el   ++ ++ le+a+ k  ++++e +++l ++++   +  +  ++ ++aa+e n 
  KOO21320.1 209 ELETLETKLNE--ANRLREELRSNEERKEMLEAAMAKCRAAAQEGKDRLPERRAVLDQFHRVHNEYQQAATEHNH 281
                 77777766665..66667777777777777777777777777777777777777666666666666666666655 PP

  == domain 3  score: -4.9 bits;  conditional E-value: 3.8
      AAA_13 283 ekqerLekliekveskkselleklkavsdeasensa.feedkeelkaeaealeeqLkglqraleaKrkepfksvelesvkakiesikklvaeineliak 380
                 ++++ L   +e++e+k  +++++l +   +++e+++  e + ++ +a+a++ +++L + + +l++   ++ ++ ++  ++ +  +   + ++++eli++
  KOO21320.1 201 KDIKVLAAELETLETKL-NEANRLREELRSNEERKEmLEAAMAKCRAAAQEGKDRLPERRAVLDQFH-RVHNEYQQAATEHN-HASDAAGKALQELIRQ 296
                 34444445555555554.3344554444443333332555555666666666666655555554433.44442222222222.2244456666677777 PP

      AAA_13 381 hNekvanleeekeeakkklelhlveeleseldeykkkykklekaieklekelkeeeaelkkleeeikeLekq 452
                 +    ++ ++e +e++++  +  v+ ++ +ld+         ++i ++e+el+ +e++   +++  ++ ++q
  KOO21320.1 297 YGGPLEESDAELQEIETSQGAATVQ-MRTDLDKTR-------NQIGEMERELESDEQRRDSARGLLEQHKAQ 360
                 6666666666666666665554433.445544333.......444444444444444433333333333333 PP

  == domain 4  score: -8.2 bits;  conditional E-value: 9
      AAA_13 287 rLekliekveskkselleklkavsdeasensafeed..keelkaeaealeeqLkglqraleaKrkepfksvelesvkaki....esikklvaeinelia 379
                  L ++++++ ++k e++e++ +   ++ ++++ e +   e+++ + ++ ++ L +  r+le++  e+ ++++le   a++    +++k +  +++e ++
  KOO21320.1 413 VLHSRQSELTRAK-EEQEQVRQTQRAKVQQQRLELEhgAEKANGKEREASS-LLAKVRQLEERL-EIGSQADLETRLARMrqenVELKADYRAAEEDVS 508
                 4444444444443.2334444333333333333333113333333222222.333333455555.3333333333333332222455555555555553 PP

      AAA_13 380 ..khNekvanleeekeeakkklelhlveeleseldeykkkykklekaieklekelkeeeaelkkleeeik 447
                   +  e  an+ ++k ++++kl + l+eel   +++  +k  +l ++++ ++++ ++  a + +++ + +
  KOO21320.1 509 gsSLREDLANHRNQKRTVRDKLSR-LAEEL-VLISAEGEKQGRLHRQLQLAKEKREKLDASVSERRPKLR 576
                 224455566666666666666655.22222.333333333334444444444333333333333333333 PP

  == domain 5  score: 4.8 bits;  conditional E-value: 0.0046
      AAA_13 280 efeekqerLekliekveskkselleklkavsd.easensafeedkeelkaeaealeeq..LkglqraleaKrkepfksvelesvkakiesikklvaein 375
                 e+++k+e+L +l+ k++++++++ ++ + + + ++++  + +   e+++++   ++++  L +l+++ + K +   k +  ++  + +    k v++in
  KOO21320.1 632 EVQAKTEQLRELVRKIDEDEAKVRTQEPGMLApSYDFPTQLAALEEDVRKKEVDVQDSngLLELMEKAKTKAESTGKCMVCSQKVDHALIQDKFVSRIN 730
                 67999***********99999998887777664566666666667777775544444447889999999999888887777776666664566667776 PP

      AAA_13 376 eliakhNekvanleeekeeakkklelhl.veeleseldeyk.kkykklekaieklek...elkeeeaelkkleeeikeLekqlrdekpaaeeinkeLka 469
                 +  +++ +  a l+++ +ea++k+++h  + el++++ + k +++ +le+ +e + +   +lk e +++++++ e+++L  + rd k  ++ +n + ++
  KOO21320.1 731 K-MKANPQNGAALKAQLQEARDKVRRHQqLVELTQDIFKRKaSEKPALEQMLEAARAdheRLKREHEAKQQAAREARDLADKARDLKSDVDHLNHLFRD 828
                 6.688889999***************9867888888864443677777877777765111456666667777778999****************98765 PP

  == domain 6  score: -20.3 bits;  conditional E-value: 9
      AAA_13  91 siekqekieklkkeikkleekleaaeaqlqkaekekkklekeledeawkkivkkknsalsealkglkyeekfkerllkelkkknrkaaellsdeelkak 189
                 + e++ ++e+l+ +i+k    l+++ea+l++++++++++e+e++                              +l +e+++  r+a+++l++ +++ +
  KOO21320.1 861 KEETESELERLERQIDKDDLALRQKEAELSELRTRRDQKENEVT------------------------------KLSAECERR-RDADARLTEVKQQMA 928
                 33334444444444444444444444444444333333333333..............................333333332.222222222222222 PP

      AAA_13 190 .....letvesenlpelaplslssidldalekaeil 220
                      ++ + ++++p+ ++    ++d dal+++e+ 
  KOO21320.1 929 qlqreAAELRESERPRQQQ---LAADEDALRADELR 961
                 1110011111111111111...11222222222222 PP

  == domain 7  score: 1.4 bits;  conditional E-value: 0.049
      AAA_13  528 kivviDDPvSSLDsnslfivfsliksrl..lkkkkakQlfiLTHnleffkevkkn 580 
                  +i  +D P   LD   + + +  +++ +  +k++   Ql++ TH  ef + + + 
  KOO21320.1 1219 GILALDEPTTNLDRPNIESLAAALNEIIkaRKHQTNFQLIVITHDEEFVQLIGRS 1273
                  6888999999999988888888888877533555566***********9887654 PP

>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.1  42.8     0.057   1.1e+02       2     204 ..       4    1269 ..       3    1281 .. 0.95

  Alignments for each domain:
  == domain 1  score: 2.1 bits;  conditional E-value: 0.057
                  EEEEEEESETTEE.CEEEEEETTSSEEEEEESTTSSHHHHHHHHHHHCTT.TTTTTTCHCCCCCC--.BTTCSSTTEEEEEEEEEETTEESSSSSSC CS
                  xxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N    2 lkrleienFksya.gktvilpfsksftaivGpNGSGKsnlldAilFvLGersakklrseklsdlihk.skekasvkkaeveitfdnedkklkiekee 96  
                  + ++ i++ +s+  ++t++++f k +t ivG+NGSGK+  ++ ++     +       ++ ++ i+  + +++s  ka++++ f+    +  + + +
  KOO21320.1    4 IDKMSIRGIRSFSpTETQVIEFYKPLTLIVGKNGSGKTTTIECLKMATTGDLPP--NCRNGQAFINDpNVHNSSEVKAQIKLKFTTATGRPAVCTRS 98  
                  78999*******84578899************************7665544444..455678899997778888899*******9888886666666 PP

                  EEEEEEEETTSEEEEEETTEEE-HHHHHHHHHCTT-STT.......................................................... CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.......................................................... RF
       SMC_N   97 vsisrrvkrkgeseykingkevtkkevsellesagiske.......................................................... 135 
                  +s+ ++  +k+   ++   +++ +k  +  l+ +  + +                                                          
  KOO21320.1   99 FSLVQKTTKKEYKAFEAALQTIDEKGDKTSLSYKCADLNklvpemmhvstavldsvifvhqedacwplqedkvlkdrfdaifaatnytkaldaikvy 195 
                  666666555555454444444444333333333333333556667777789999******************************************* PP

                  ................................................................................................. CS
                  ................................................................................................. RF
       SMC_N  136 ................................................................................................. 135 
                                                                                                                   
  KOO21320.1  196 kadkakdikvlaaeletletklneanrlreelrsneerkemleaamakcraaaqegkdrlperravldqfhrvhneyqqaatehnhasdaagkalqe 292 
                  ************************************************************************************************* PP

                  ................................................................................................. CS
                  ................................................................................................. RF
       SMC_N  136 ................................................................................................. 135 
                                                                                                                   
  KOO21320.1  293 lirqyggpleesdaelqeietsqgaatvqmrtdldktrnqigemerelesdeqrrdsarglleqhkaqeahhkevereavcaanelgrkyvsgstas 389 
                  ************************************************************************************************* PP

                  ................................................................................................. CS
                  ................................................................................................. RF
       SMC_N  136 ................................................................................................. 135 
                                                                                                                   
  KOO21320.1  390 gaevppgvspiqhvqaaadslarvlhsrqseltrakeeqeqvrqtqrakvqqqrlelehgaekangkereassllakvrqleerleigsqadletrl 486 
                  ************************************************************************************************* PP

                  ................................................................................................. CS
                  ................................................................................................. RF
       SMC_N  136 ................................................................................................. 135 
                                                                                                                   
  KOO21320.1  487 armrqenvelkadyraaeedvsgsslredlanhrnqkrtvrdklsrlaeelvlisaegekqgrlhrqlqlakekrekldasvserrpklralmetct 583 
                  ************************************************************************************************* PP

                  ................................................................................................. CS
                  ................................................................................................. RF
       SMC_N  136 ................................................................................................. 135 
                                                                                                                   
  KOO21320.1  584 adadvlrlleqeslgrefarkratrdelvadkereaaaaldkaqkkgfevqakteqlrelvrkidedeakvrtqepgmlapsydfptqlaaleedvr 680 
                  ************************************************************************************************* PP

                  ................................................................................................. CS
                  ................................................................................................. RF
       SMC_N  136 ................................................................................................. 135 
                                                                                                                   
  KOO21320.1  681 kkevdvqdsngllelmekaktkaestgkcmvcsqkvdhaliqdkfvsrinkmkanpqngaalkaqlqeardkvrrhqqlveltqdifkrkasekpal 777 
                  ************************************************************************************************* PP

                  ................................................................................................. CS
                  ................................................................................................. RF
       SMC_N  136 ................................................................................................. 135 
                                                                                                                   
  KOO21320.1  778 eqmleaaradherlkreheakqqaareardladkardlksdvdhlnhlfrdwtkeqtevgtiqsgmqsgmgtlhrrrdvveaekeeteselerlerq 874 
                  ************************************************************************************************* PP

                  ................................................................................................. CS
                  ................................................................................................. RF
       SMC_N  136 ................................................................................................. 135 
                                                                                                                   
  KOO21320.1  875 idkddlalrqkeaelselrtrrdqkenevtklsaecerrrdadarltevkqqmaqlqreaaelreserprqqqlaadedalradelrldaavrnsda 971 
                  ************************************************************************************************* PP

                  ................................................................................................. CS
                  ................................................................................................. RF
       SMC_N  136 ................................................................................................. 135 
                                                                                                                   
  KOO21320.1  972 kaseclrdqtrlaeyctrlaqgssssrkqllidcearvaethrvvtekreklkerqhraallhqklqgqeqlrtqmlanlsqrevihenelersrle 1068
                  ************************************************************************************************* PP

                  ................................................................................................. CS
                  ................................................................................................. RF
       SMC_N  136 ................................................................................................. 135 
                                                                                                                   
  KOO21320.1 1069 gslstivaqitstrmqlqdqkfkkidqehrekliefktvqmavddlgryykalnaalmrfhetkmadvnkaitelwnktykgtdidgitiktenege 1165
                  ************************************************************************************************* PP

                  ..............................CS-HHHHHHHHHHHHHHHHCCS--SEEEECTTTTTS-HHHHHHHHHHHH......HHCTTSEEEEE- CS
                  ..............................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx......xxxxxxxxxxxx RF
       SMC_N  136 ..............................lLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvkkvaellk......eksknaQfivis 196 
                                                l+Sg   + + + L +A   +    +  lDe   +LD  n++ +a  l+      ++++n+Q+ivi+
  KOO21320.1 1166 tadgrrkqtyrvvmkkgdtqldmrgrliafLISG-VLASLVIRLALAESFCINCGILALDEPTTNLDRPNIESLAAALNeiikarKHQTNFQLIVIT 1261
                  *****************************55555.55555577777888889999*****************999876533335467889******* PP

                  SSHHHCCC CS
                  xxxxxxxx RF
       SMC_N  197 lreemlek 204 
                  ++ee+++ 
  KOO21320.1 1262 HDEEFVQL 1269
                  ****9875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1306 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2827  (0.157678); expected 358.6 (0.02)
Passed bias filter:                      661  (0.0368676); expected 358.6 (0.02)
Passed Vit filter:                       137  (0.00764125); expected 17.9 (0.001)
Passed Fwd filter:                        65  (0.00362541); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 2.54u 0.38s 00:00:02.92 Elapsed: 00:00:00.69
# Mc/sec: 5716.51
//
Query:       KOO21321.1  [L=222]
Description: thymidylate synthase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.4e-20   73.6   0.0    2.2e-20   73.0   0.0    1.3  1  UPF0029   Uncharacterized protein family UPF0029


Domain annotation for each model (and alignments):
>> UPF0029  Uncharacterized protein family UPF0029
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   73.0   0.0   1.2e-24   2.2e-20       1     105 []      44     147 ..      44     147 .. 0.90

  Alignments for each domain:
  == domain 1  score: 73.0 bits;  conditional E-value: 1.2e-24
                 TTEEEEEEEEE-SSHHHHHHHHHHH--..TTSSEEEEEE....EE....TTEE-TTSST..SHHHHHHHHHHTTB-SEEEEEEEE.--.SS--HHHHH. CS
     UPF0029   1 kkSrFiavlaaveseeevkaileelkkenkkathniyAyrlrqkvekvnedsdddgEpa..AGkkllelLekeklenvlvvvtRw.fG.GikLGpgrl. 94 
                 kkSrF+a +a+++++e ++a+++  +++++ka+hn++A+rl+       +  + dgEp+  AG ++l ++e ++l++v+v+vtR+  G G +LG+g+l 
  KOO21321.1  44 KKSRFVALAAPARTAEAANAYVK--EHSDQKARHNCFAWRLSCGS----TRTNGDGEPGgtAGPPILAAIEGAGLHDVVVLVTRYkLGeGALLGTGGLv 136
                 8**********************..566688********655555....6899********************************6344789******* PP

                 HHHHHHHHHHH CS
     UPF0029  95 raiseaareaL 105
                 ra+  +a  aL
  KOO21321.1 137 RAYGGTAAAAL 147
                 ****9999886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (222 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       439  (0.0244855); expected 358.6 (0.02)
Passed bias filter:                      337  (0.0187964); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.24s 00:00:00.65 Elapsed: 00:00:00.41
# Mc/sec: 1626.77
//
Query:       KOO21322.1  [L=502]
Description: hypothetical protein Ctob_006703 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (502 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       518  (0.0288917); expected 358.6 (0.02)
Passed bias filter:                      345  (0.0192426); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.50u 0.22s 00:00:00.72 Elapsed: 00:00:00.39
# Mc/sec: 3852.59
//
Query:       KOO21323.1  [L=355]
Description: hypothetical protein Ctob_006702 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    8.2e-05   22.7   0.0    0.00016   21.8   0.0    1.5  1  PPR_2     PPR repeat family


Domain annotation for each model (and alignments):
>> PPR_2  PPR repeat family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.8   0.0   8.8e-09   0.00016       1      45 [.       2      54 ..       2      56 .. 0.94

  Alignments for each domain:
  == domain 1  score: 21.8 bits;  conditional E-value: 8.8e-09
       PPR_2  1 pdvvtyNtlIsglc........kkgkveeAfklfneMkkrglePnsyTysili 45
                p + tyNt++  l+        +k  +++A+++ +eM  rg+ ++s T s+l+
  KOO21323.1  2 PTSQTYNTVLISLLsaaddaerRKSLFSKAVEIIEEMNARGIAMSSDTVSVLM 54
                56779***9999999******99999*************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (355 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       470  (0.0262145); expected 358.6 (0.02)
Passed bias filter:                      359  (0.0200234); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.27s 00:00:00.74 Elapsed: 00:00:00.42
# Mc/sec: 2508.20
//
Query:       KOO21324.1  [L=484]
Description: bardet-biedl syndrome 7 protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
  ------ inclusion threshold ------
      0.077   13.1   0.1       0.14   12.2   0.1    1.3  1  Ribosomal_L19e  Ribosomal protein L19e


Domain annotation for each model (and alignments):
>> Ribosomal_L19e  Ribosomal protein L19e
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.1   7.7e-06      0.14      70     121 ..      81     132 ..      70     143 .. 0.89

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 7.7e-06
                     TT-S-SGGG--S-HHHHS-HHHHHHHHHHHHHHHHHHHHHTTSS-HHHHHHH CS
  Ribosomal_L19e  70 kgrrrgsGkrkGtkeaRlpekelWikriRalRrlLkelrekkkidkktYrel 121
                      g   ++Gk   t +a   +ke+  k+iR lR++L++lr++ + ++++Y ++
      KOO21324.1  81 LGADAKPGKPVPTVKATKAKKERGDKKIRDLREELETLRAQVEKEREKYAKV 132
                     577778899999999**************************99999999875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (484 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1115  (0.0621897); expected 358.6 (0.02)
Passed bias filter:                      754  (0.0420548); expected 358.6 (0.02)
Passed Vit filter:                        96  (0.00535445); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.62u 0.25s 00:00:00.87 Elapsed: 00:00:00.42
# Mc/sec: 3421.06
//
Query:       KOO21325.1  [L=168]
Description: hypothetical protein Ctob_006705 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (168 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       346  (0.0192983); expected 358.6 (0.02)
Passed bias filter:                      311  (0.0173462); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.40u 0.27s 00:00:00.67 Elapsed: 00:00:00.44
# Mc/sec: 1156.96
//
Query:       KOO21326.1  [L=136]
Description: histone -like protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.2e-49  168.0   1.1    1.4e-49  167.8   1.1    1.0  1  Histone        Core histone H2A/H2B/H3/H4
    0.00019   21.5   0.0    0.00035   20.6   0.0    1.4  1  CENP-T_C       Centromere kinetochore component CENP-T histon
    0.00076   19.8   0.0     0.0013   19.1   0.0    1.3  1  CENP-S         CENP-S protein
     0.0068   16.7   0.0      0.012   15.8   0.0    1.4  1  CBFD_NFYB_HMF  Histone-like transcription factor (CBF/NF-Y) a


Domain annotation for each model (and alignments):
>> Histone  Core histone H2A/H2B/H3/H4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  167.8   1.1     3e-53   1.4e-49       1     131 []       1     132 [.       1     132 [. 0.99

  Alignments for each domain:
  == domain 1  score: 167.8 bits;  conditional E-value: 3e-53
                 XXEESXEEEXXXXEEXXXXXXXXXXHT.TS-SSSSB--TTT-XTTHHHHHHHHHHHHXXSXXSXHHHHHHHHHHHH.TTSSSXEEXHHHHHHHHHHHHH CS
     Histone   1 marekekarkesektapekkvsakker.kasskskkkkkrryrpgtvalkeirkyqkstdlliqklpfaRvvreivksekedlrisaeavlalqealEa 98 
                 mar+k++ark+++++a +k + ak +r + +++    k++r+rpgtval+ i++yqkst+lli+klpf+R+vrei +++k+dlr+ ++av+alqea+Ea
  KOO21326.1   1 MARTKQTARKSTDGKAHRKLLDAKAARkSTPATGGVMKPHRWRPGTVALRDIKRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFESSAVVALQEASEA 99 
                 9************************************************************************************************** PP

                 HHHHHHHHHHHHHHHTTXSEEXHHHHHHHHHHT CS
     Histone  99 llvelfeeAnllakhaKRvTitpkDiqlArrlr 131
                 +lv lf ++nl+a+haKRvTi+pkDiqlArr+r
  KOO21326.1 100 YLVGLFADTNLCAIHAKRVTIMPKDIQLARRIR 132
                 *******************************97 PP

>> CENP-T_C  Centromere kinetochore component CENP-T histone fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.6   0.0   7.9e-08   0.00035      11      75 ..      70     129 ..      59     134 .. 0.83

  Alignments for each domain:
  == domain 1  score: 20.6 bits;  conditional E-value: 7.9e-08
    CENP-T_C  11 avvkklakrfakasgskaklekealkalekasdkffeqvgeDLeayakHagRKtidesDvilLmk 75 
                  +v+ +a++f     +  + e +a+ al++as+ ++  +  D +  a Ha+R ti  +D+ l  +
  KOO21326.1  70 RLVREIAQDF----KTDLRFESSAVVALQEASEAYLVGLFADTNLCAIHAKRVTIMPKDIQL-AR 129
                 3455566666....56799****************************************864.44 PP

>> CENP-S  CENP-S protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.1   0.0   2.8e-07    0.0013      13      71 ..      70     130 ..      65     133 .. 0.84

  Alignments for each domain:
  == domain 1  score: 19.1 bits;  conditional E-value: 2.8e-07
      CENP-S  13 kiveeeaa..ekeveatkqfiaaltelvykqlenlakDLeaFakHAkRstittdDvlLlaR 71 
                 ++v+e+a+  ++++++ ++++ al e   + l  l  D ++ a HAkR ti ++D+ L  R
  KOO21326.1  70 RLVREIAQdfKTDLRFESSAVVALQEASEAYLVGLFADTNLCAIHAKRVTIMPKDIQLARR 130
                 4556654423666779999*************************************99766 PP

>> CBFD_NFYB_HMF  Histone-like transcription factor (CBF/NF-Y) and archaeal histone
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.0   2.8e-06     0.012       2      64 ..      65     128 ..      64     128 .. 0.92

  Alignments for each domain:
  == domain 1  score: 15.8 bits;  conditional E-value: 2.8e-06
                    XXXHHHHHHHHHCC.TTXS-B-HHHHHHHHHHHHHHHHHHHHHHHHHHCCTTSSCE-HHHHHHH CS
  CBFD_NFYB_HMF   2 eLPiarvkkImksd.pdarkiakdAkeliaecveefieelaseAaeickkekrKtikaehiklA 64 
                    +LP  r  + + +d + + ++ ++A + ++e+ e ++  l + ++  + ++kr ti++++i+lA
     KOO21326.1  65 KLPFQRLVREIAQDfKTDLRFESSAVVALQEASEAYLVGLFADTNLCAIHAKRVTIMPKDIQLA 128
                    78888888877777799999*****************************************998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (136 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       333  (0.0185733); expected 358.6 (0.02)
Passed bias filter:                      262  (0.0146132); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.36u 0.24s 00:00:00.60 Elapsed: 00:00:00.38
# Mc/sec: 1066.78
//
Query:       KOO21327.1  [L=246]
Description: bardet-biedl syndrome 7 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (246 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       398  (0.0221987); expected 358.6 (0.02)
Passed bias filter:                      374  (0.0208601); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.41u 0.22s 00:00:00.63 Elapsed: 00:00:00.38
# Mc/sec: 1959.14
//
Query:       KOO21328.1  [L=226]
Description: hypothetical protein Ctob_006706 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.083   12.7   0.0       0.13   12.1   0.0    1.3  1  DUF3431   Protein of unknown function (DUF3431)


Domain annotation for each model (and alignments):
>> DUF3431  Protein of unknown function (DUF3431)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0     7e-06      0.13      40      75 ..      55      92 ..      36     104 .. 0.81

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 7e-06
     DUF3431 40 nkGreamaYltyiidnYdsLpdvvvFvhahr..aawhn 75
                  G+e +  + +++dnYd+  d v+F+h++    ++h+
  KOO21328.1 55 ANGHEGVCTFRFLLDNYDRPWDNVFFLHGDVhkGKHHQ 92
                57**************************8752133333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (226 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       311  (0.0173462); expected 358.6 (0.02)
Passed bias filter:                      243  (0.0135535); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.25s 00:00:00.65 Elapsed: 00:00:00.40
# Mc/sec: 1681.82
//
Query:       KOO21329.1  [L=268]
Description: hypothetical protein Ctob_006704 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (268 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       378  (0.0210832); expected 358.6 (0.02)
Passed bias filter:                      314  (0.0175135); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.44u 0.24s 00:00:00.68 Elapsed: 00:00:00.42
# Mc/sec: 1929.27
//
Query:       KOO21330.1  [L=406]
Description: aspartate aminotransferase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.3e-73  247.5   0.0    2.6e-73  247.3   0.0    1.0  1  Aminotran_1_2  Aminotransferase class I and II


Domain annotation for each model (and alignments):
>> Aminotran_1_2  Aminotransferase class I and II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  247.3   0.0   1.4e-77   2.6e-73       2     361 ..      20     395 ..      19     397 .. 0.94

  Alignments for each domain:
  == domain 1  score: 247.3 bits;  conditional E-value: 1.4e-77
                    EEEESSSSSTTSTTSS.HHHHHHHHHHHH...HHHHHTSTTST-BTTHHHHHHHHHHHHHC..TCTTCHTTGGEGEEEESHHHHHHHHHHHHHHHT CS
  Aminotran_1_2   2 dvinLgsneylgdsgk.ptlpevakaeke...galaggtlneygpidglpeleealakflg..rseklklkreaavvvgsGagaliealifllkln 91 
                    +++nLg++ y++d+gk ++l ++++ae +    +++g+t++ey+pi+g +++++  a++++   s +l + r a+ +++sG+ga+ +a+ +l  + 
     KOO21330.1  20 KKVNLGQGVYRTDEGKpYVLSSIKEAEGRvasELQSGRTFKEYLPIEGDATFRKLSAELVFgaGSAALREGRVATMQTISGTGAVSVAASTLRLVG 115
                    79**************9999999999999999999**************************99999**************************9788 PP

                    TT-EEEEEESS-THHHHHHHHTTSEEEEEEBEET.TTTEE-HHHHHHHHTTHHCTTETEEEEEEESS-TTT--B--HHHHHHHHHHHHHTTEEEEE CS
  Aminotran_1_2  92 pgdeilvpdptyasyknilrlsggevvryplyse.edfhldlealeealkeapegnkktkvilvesphNPtGtvatleeleklldlakkynlllfv 186
                      +ei++p+p+++++ +i+ ++g+ev++yp+ ++  + +ld+ea+ eal++  +      v+l++++hNPtG+++t+e++e l+ +  k++ll ++
     KOO21330.1 116 GFTEIYLPEPSWSNHAQIFGAAGLEVRSYPYLDKrTGTTLDFEAMHEALATMVPAGS--AVLLHACAHNPTGVDPTPEQWEVLAGTFAKRGLLAVF 209
                    8899***************************99978899************988888..8************************************ PP

                    EETTTTCBSSSS..HTHHHHGGSTTSTTEEEEEESSSTTSSGGG-EEEEEEEH.......HHHHHHHH.HHHHHTS..SHHHHHHHHHHHHHHHHH CS
  Aminotran_1_2 187 DeaYagfvfgsl..davatranveeepnllivgslsKafGlaGeRvGyilgna.......avvsqlrk.lsrpfls..ssllqaavaaalsdallk 270
                    D aY+g ++g+l  da+++r++ ++++  ++++s++K++Gl+GeRvG++  +        av+s +++ ++rp++s  + +++++++ +l d+ l 
     KOO21330.1 210 DSAYQGYASGDLdaDAASVRCFEAAGVLPIVCQSYAKSMGLYGERVGAVNFVTasaaeaaAVLSNVKQrVVRPVYSspPLHGARLASLVLGDPALS 305
                    ************55555667777777777*******************99955599****88888875389************************9 PP

                    HH...HHHHHHHHHHHHHHHHHHHHHHS........TEEEECCSCSSEEEEEETHHCHHHHHHHHHHTCTEEEEEGGGGTSTTEEEEECTTS-HHH CS
  Aminotran_1_2 271 qs...eleemrqrlqkrrkelrdeLael........glkvlasqsgmflltdlsaetakelskkLleevgvyvtpgtsftvpgrlRitvAglteee 355
                    +    el  m+ r+ ++r el ++L +l         +++l+ q+gmf +t+lsa+      ++L+e+++vy+t+        ++R ++A+l++++
     KOO21330.1 306 AAwraELLVMAGRVRRMRAELAAALVRLgapapdggRWEHLTAQIGMFAYTGLSAQ----HVDALRERYHVYMTR--------DGRACMAALKPDD 389
                    99************************99**************************99....7777***********........************* PP

                    HHHHHH CS
  Aminotran_1_2 356 leelve 361
                    +e+++ 
     KOO21330.1 390 VEYVAG 395
                    ***986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (406 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       408  (0.0227564); expected 358.6 (0.02)
Passed bias filter:                      327  (0.0182386); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.26s 00:00:00.74 Elapsed: 00:00:00.43
# Mc/sec: 2862.30
//
Query:       KOO21331.1  [L=267]
Description: hypothetical protein Ctob_003121 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.3e-13   50.8   0.0    2.1e-13   50.1   0.0    1.3  1  RAP        RAP domain
    5.6e-05   23.2   0.0    9.3e-05   22.5   0.0    1.3  1  MTES_1575  REase_MTES_1575
  ------ inclusion threshold ------
      0.014   15.3   0.0      0.099   12.6   0.0    2.4  3  FAST_1     FAST kinase-like protein, subdomain 1
      0.018   15.8   0.0      0.032   15.0   0.0    1.3  1  FAST_2     FAST kinase-like protein, subdomain 2


Domain annotation for each model (and alignments):
>> RAP  RAP domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.1   0.0   4.7e-17   2.1e-13       1      54 [.     194     246 ..     194     250 .. 0.90

  Alignments for each domain:
  == domain 1  score: 50.1 bits;  conditional E-value: 4.7e-17
         RAP   1 IevdGpshyyknsknltgktklKkriLsklGykvinIpyfeWnqlknkedkvey 54 
                 IevdGpsh++ +++  tg t+lK r L++ G+ ++ +py++Wn l +   + e+
  KOO21331.1 194 IEVDGPSHFVGRTHTPTGATALKWRQLRAAGWALVAVPYWQWNAL-DVAGQREF 246
                 9*******************************************9.65555555 PP

>> MTES_1575  REase_MTES_1575
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.5   0.0   2.1e-08   9.3e-05       3      81 ..     156     236 ..     154     247 .. 0.86

  Alignments for each domain:
  == domain 1  score: 22.5 bits;  conditional E-value: 2.1e-08
   MTES_1575   3 eeVaeaLrergykvkpqvg.vggfriDlvvedpgkyllaIecdgdkyhsskeard..rdierqevLerlGWkilRiwssdwy 81 
                 ++V +aL++ g + +++v+  +g+++D+vv  + ++ +aIe+dg+++   ++        ++ + L+++GW ++ + + +w 
  KOO21331.1 156 RQVGAALKALGHEPREEVRtPQGYSLDVVVCIE-GREVAIEVDGPSHFVGRTHTPtgATALKWRQLRAAGWALVAVPYWQWN 236
                 78999********9999994579**********.9**********8776655443238899999**********99999996 PP

>> FAST_1  FAST kinase-like protein, subdomain 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   2.2e-05     0.099       7      61 ..       5      56 ..       1      61 [. 0.87
   2 ?    1.5   0.0     0.063   2.8e+02      19      52 ..      51      84 ..      49      90 .. 0.85
   3 ?   -2.6   0.0       1.2   5.4e+03      43      66 ..     223     246 ..     220     247 .. 0.79

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 2.2e-05
      FAST_1  7 farLNykpenaeeFfeklesrlepylsslspeelldavwsLcileqfpeallnkv 61
                +a+  +  +   ++++++++   p+  +++p+ l + +w+ +  +++ ++ll+++
  KOO21331.1  5 YATAEHAAP---KLLDAIAAEAAPRVREFDPQALASTAWAYATAQHAAPKLLDAI 56
                555555555...79999***********************************998 PP

  == domain 2  score: 1.5 bits;  conditional E-value: 0.063
      FAST_1 19 eFfeklesrlepylsslspeelldavwsLcileq 52
                ++++++++   p+ +++++  l +++w+ +  ++
  KOO21331.1 51 KLLDAIAAEAVPRGHEFNQLQLANMAWAYAAADH 84
                68888889999999**************998877 PP

  == domain 3  score: -2.6 bits;  conditional E-value: 1.2
      FAST_1  43 avwsLcileqfpeallnkvlspdf 66 
                 a w+L+ + +++ ++l+   + +f
  KOO21331.1 223 AGWALVAVPYWQWNALDVAGQREF 246
                 579999999999999987666666 PP

>> FAST_2  FAST kinase-like protein, subdomain 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.0   0.0   7.2e-06     0.032      22      81 ..     131     187 ..     125     192 .. 0.77

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 7.2e-06
      FAST_2  22 rLpekykvksvkkparsskkksplqkevqeaLkelLggenylkinvltpygytiDfevvL 81 
                 rLp+ + ++ +    ++   +s+lq++v  aLk  Lg e   + +v tp gy++D++v++
  KOO21331.1 131 RLPPLLAERCHAAFVAAEGRPSRLQRQVGAALKA-LGHEP--REEVRTPQGYSLDVVVCI 187
                 5555555555444555555559**********97.67777..89**************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (267 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       443  (0.0247086); expected 358.6 (0.02)
Passed bias filter:                      307  (0.0171231); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.43u 0.26s 00:00:00.69 Elapsed: 00:00:00.42
# Mc/sec: 1924.69
//
Query:       KOO21332.1  [L=406]
Description: sulfatase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.2e-19   70.8   1.1    2.1e-19   70.0   1.1    1.4  1  Sulfatase  Sulfatase
    3.2e-06   27.3   0.1      7e-06   26.2   0.1    1.6  1  DUF4976    Domain of unknown function (DUF4976)


Domain annotation for each model (and alignments):
>> Sulfatase  Sulfatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.0   1.1   2.4e-23   2.1e-19      20     195 ..       8     181 ..       3     241 .. 0.79

  Alignments for each domain:
  == domain 1  score: 70.0 bits;  conditional E-value: 2.4e-23
                 TTTSCSSHHHHHHHHTSEEESSEE-SSSSHHHHHHHHHHSS-HHHHTHSSCCSTTT...HHCTTTS-HHHHHHHHTT-EEEEEEES-SCCSGGGSHHC. CS
   Sulfatase  20 ggktattpnldrlaeeglrftnfysaaplcspsraalltgryphnsgvasntevgg...gglpqteatLpellkeaGYntaaigkwhlgwssrqsvyk. 114
                 g  ++ +pnldrl++ g+rft+ ++++++cs+sra+++tg + h +g            +    +e+++ ++l++ GY+ +  gk  +  +  ++++  
  KOO21332.1   8 GE-VP-MPNLDRLTAGGVRFTQCHTSHTTCSQSRASFMTGWPTHVNGH-------RslwSLVRDSEPNVFRYLHDDGYDVYWWGKNDNLED--TAMMHs 95 
                 44.44.9***********************************999882.......12448999*****************77777666644..443336 PP

                 .......CTTTSEEEETSSSCHHTCCCCCCCCCECTCCCTTTTCSHHHHHHHHHHHHH.HCCC.TSSEEEEEEE-TTSSSTCTCGGHTCC CS
   Sulfatase 115 .......nrgfdrflgfptgsaalkdpekseyngevlrvppeggysddrlldealefl.larn.dkpfflylatlapHappeapdeyakk 195
                        n+g ++  +  +    + dp +++   + l+ + ++++ d   ++ea+efl ++++ + pf+++l +l pH p+ +p++++ +
  KOO21332.1  96 tmhreagNGGDHNGTKLFA----FGDPRYYSFLYPPLDASHANKTQDWYNVNEAIEFLkKRTPsSPPFMIFLPLLLPHPPYSCPEPWHSM 181
                 7877776555555555444....44444444444444446777778888889******988889**************888888888765 PP

>> DUF4976  Domain of unknown function (DUF4976)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.2   0.1   7.9e-10     7e-06      24     101 ..     296     377 ..     290     379 .. 0.73

  Alignments for each domain:
  == domain 1  score: 26.2 bits;  conditional E-value: 7.9e-10
     DUF4976  24 kalyY.hyyeyPaehavkrhygvrteryklihfy..kdid.ewelyDlkkDpkelknlyddpeyeevvkelkkkleelrkky 101
                 +++yY +  e   + +v r  +vr    kl+     k  d   elyDl +Dp el+n y dp+y+ + +elk+++ +   ++
  KOO21332.1 296 DDYYYkELLEQDLPISVCRAVSVRNLTAKLVFRSdpKAPDhYSELYDLVADPFELSNKYADPAYAPLRAELKEEMLRWLVQT 377
                 55555245666667777788888888888774331122341469******************************98876665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (406 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       463  (0.0258241); expected 358.6 (0.02)
Passed bias filter:                      400  (0.0223102); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.48u 0.23s 00:00:00.71 Elapsed: 00:00:00.39
# Mc/sec: 3103.88
//
Query:       KOO21333.1  [L=670]
Description: hypothetical protein Ctob_003124 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.2e-52  170.2  22.2    8.2e-05   22.4   0.1   10.4 10  LRR_6          Leucine Rich repeat
    5.2e-10   39.4  14.8       0.11   13.0   0.0    7.5  7  LRR_4          Leucine Rich repeats (2 copies)
      2e-07   30.6   0.0         14    6.7   0.0    8.1  9  LRR_1          Leucine Rich Repeat
     0.0034   17.6   4.1        2.2    8.6   0.0    4.4  4  SpoU_sub_bind  RNA 2'-O ribose methyltransferase substrate bi
  ------ inclusion threshold ------
      0.092   12.5  16.7         29    4.5   0.5    7.4  5  LRR_8          Leucine rich repeat


Domain annotation for each model (and alignments):
>> LRR_6  Leucine Rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.3   0.0   2.2e-07   0.00077       5      23 ..     386     404 ..     386     405 .. 0.96
   2 !   18.6   0.0   3.6e-07    0.0013       2      24 .]     411     433 ..     410     433 .. 0.93
   3 !   20.8   0.0   7.4e-08   0.00027       2      24 .]     439     461 ..     438     461 .. 0.91
   4 !   16.2   0.0   2.1e-06    0.0076       5      24 .]     470     489 ..     466     489 .. 0.88
   5 !   20.4   0.1   9.5e-08   0.00034       2      23 ..     495     516 ..     494     516 .. 0.94
   6 !   21.0   0.2   6.3e-08   0.00023       2      22 ..     523     543 ..     522     543 .. 0.93
   7 !   22.4   0.1   2.3e-08   8.2e-05       5      24 .]     554     573 ..     552     573 .. 0.96
   8 !   16.0   0.0   2.5e-06    0.0089       2      24 .]     579     601 ..     578     601 .. 0.93
   9 !   14.2   0.1   9.8e-06     0.035       5      24 .]     610     629 ..     606     629 .. 0.88
  10 !    8.6   0.1   0.00061       2.2       4      19 ..     637     652 ..     634     655 .. 0.90

  Alignments for each domain:
  == domain 1  score: 19.3 bits;  conditional E-value: 2.2e-07
       LRR_6   5 LteLdLsgNdIgDeGaeaL 23 
                 L++LdLs+N+Ig e a+aL
  KOO21333.1 386 LRTLDLSDNKIGPESASAL 404
                 89****************9 PP

  == domain 2  score: 18.6 bits;  conditional E-value: 3.6e-07
       LRR_6   2 nthLteLdLsgNdIgDeGaeaLa 24 
                 n  Lt+LdLs N Ig eGa a+a
  KOO21333.1 411 NAVLTTLDLSTNSIGPEGAFAIA 433
                 667******************98 PP

  == domain 3  score: 20.8 bits;  conditional E-value: 7.4e-08
       LRR_6   2 nthLteLdLsgNdIgDeGaeaLa 24 
                 n  +t+L L+gN+I DeGa+a+a
  KOO21333.1 439 NAVVTTLYLRGNNIKDEGAKAIA 461
                 55689****************98 PP

  == domain 4  score: 16.2 bits;  conditional E-value: 2.1e-06
       LRR_6   5 LteLdLsgNdIgDeGaeaLa 24 
                 +t+L L++N+IgDeGa+a+a
  KOO21333.1 470 VTKLWLQSNGIGDEGAIAIA 489
                 78899*************98 PP

  == domain 5  score: 20.4 bits;  conditional E-value: 9.5e-08
       LRR_6   2 nthLteLdLsgNdIgDeGaeaL 23 
                 nt +t+LdL  N IgDeGa+a+
  KOO21333.1 495 NTVVTTLDLENNSIGDEGAIAI 516
                 8999****************97 PP

  == domain 6  score: 21.0 bits;  conditional E-value: 6.3e-08
       LRR_6   2 nthLteLdLsgNdIgDeGaea 22 
                 nt +t+L+L gN+IgDeGa+a
  KOO21333.1 523 NTVVTTLSLGGNNIGDEGAIA 543
                 8999***************97 PP

  == domain 7  score: 22.4 bits;  conditional E-value: 2.3e-08
       LRR_6   5 LteLdLsgNdIgDeGaeaLa 24 
                 Lt LdLs N IgD Ga+a+a
  KOO21333.1 554 LTRLDLSLNPIGDNGAKAIA 573
                 9*****************98 PP

  == domain 8  score: 16.0 bits;  conditional E-value: 2.5e-06
       LRR_6   2 nthLteLdLsgNdIgDeGaeaLa 24 
                 n  LteL+L  N+Ig eGa+a+a
  KOO21333.1 579 NAVLTELSLWNNNIGPEGAIAIA 601
                 6679*****************98 PP

  == domain 9  score: 14.2 bits;  conditional E-value: 9.8e-06
       LRR_6   5 LteLdLsgNdIgDeGaeaLa 24 
                 +t+L L+gN+I D+Ga+a+a
  KOO21333.1 610 VTKLFLNGNNIEDDGAKAIA 629
                 78888*************98 PP

  == domain 10  score: 8.6 bits;  conditional E-value: 0.00061
       LRR_6   4 hLteLdLsgNdIgDeG 19 
                  Lt L+L  N++gD+G
  KOO21333.1 637 VLTILSLGQNNLGDAG 652
                 69************99 PP

>> LRR_4  Leucine Rich repeats (2 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.0   0.0   2.9e-05      0.11       3      39 ..     386     424 ..     384     428 .. 0.74
   2 !    5.5   0.0    0.0069        25       4      18 ..     443     457 ..     442     482 .. 0.68
   3 !    5.9   0.0    0.0052        19       4      38 ..     471     510 ..     469     515 .. 0.69
   4 !    7.5   0.2    0.0016       5.6       4      36 ..     499     536 ..     496     538 .. 0.72
   5 !    7.8   0.1    0.0013       4.5       4      38 ..     527     566 ..     524     568 .. 0.78
   6 !    7.9   0.9    0.0012       4.3       3      34 ..     554     591 ..     552     598 .. 0.77
   7 ?    3.9   1.6     0.022        79       4      36 ..     611     648 ..     610     651 .. 0.56

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 2.9e-05
                 --EEE--SS---.E-S-..HH...H.-TT--EEE-.-S-----G CS
       LRR_4   3 LevLdLsnNqlt.dipl..le...k.lpnLkeLdLsgNnlitdl 39 
                 L++LdLs+N++  + +   l+   k +  L++LdLs N    ++
  KOO21333.1 386 LRTLDLSDNKIGpE-SAsaLGealKvNAVLTTLDLSTN----SI 424
                 9***********55.44475565553444******999....54 PP

  == domain 2  score: 5.5 bits;  conditional E-value: 0.0069
                 -EEE--SS---E-S- CS
       LRR_4   4 evLdLsnNqltdipl 18 
                 ++L+L++N+++d + 
  KOO21333.1 443 TTLYLRGNNIKDEGA 457
                 89*********9766 PP

  == domain 3  score: 5.9 bits;  conditional E-value: 0.0052
                 -EEE--SS---E-S-HH.....H.-TT--EEE-.-S----- CS
       LRR_4   4 evLdLsnNqltdiplle.....k.lpnLkeLdLsgNnlitd 38 
                 ++L+L++N + d + ++       ++  ++LdL +Nn i+d
  KOO21333.1 471 TKLWLQSNGIGDEGAIAiaealTvNTVVTTLDL-ENNSIGD 510
                 789999999998888444454432566888999.6666655 PP

  == domain 4  score: 7.5 bits;  conditional E-value: 0.0016
                 -EEE--SS---E-S-HH.....H.-TT--EEE-.-S--- CS
       LRR_4   4 evLdLsnNqltdiplle.....k.lpnLkeLdLsgNnli 36 
                 ++LdL nN + d + ++     k ++  ++L+L gN +i
  KOO21333.1 499 TTLDLENNSIGDEGAIAitkalKvNTVVTTLSLGGN-NI 536
                 89**********999664444444555777999777.44 PP

  == domain 5  score: 7.8 bits;  conditional E-value: 0.0013
                 -EEE--SS---E-S-HH.....H-TT.--EEE-.-S----- CS
       LRR_4   4 evLdLsnNqltdiplle.....klpn.LkeLdLsgNnlitd 38 
                 ++L+L++N++ d + ++     k +  L+ LdLs N +i+d
  KOO21333.1 527 TTLSLGGNNIGDEGAIAtaealKVTAvLTRLDLSLN-PIGD 566
                 89**********999665666667778999999546.7765 PP

  == domain 6  score: 7.9 bits;  conditional E-value: 0.0012
                 --EEE--SS---E-S-..HH...H.-TT--EEE-.-S- CS
       LRR_4   3 LevLdLsnNqltdipl..le...k.lpnLkeLdLsgNn 34 
                 L+ LdLs N + d +   ++   k +  L+eL+L++Nn
  KOO21333.1 554 LTRLDLSLNPIGDNGAkaIAealKvNAVLTELSLWNNN 591
                 899****88****999873344553444******9993 PP

  == domain 7  score: 3.9 bits;  conditional E-value: 0.022
                 -EEE--SS---E-S-..HH...H.-TT--EEE-.-S--- CS
       LRR_4   4 evLdLsnNqltdipl..le...k.lpnLkeLdLsgNnli 36 
                 ++L L++N++ d +   ++   k +  L+ L+L +N ++
  KOO21333.1 611 TKLFLNGNNIEDDGAkaIAealKvNVVLTILSLGQN-NL 648
                 678888888887333552233333444777777445.33 PP

>> LRR_1  Leucine Rich Repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.7   0.0     0.004        14       2      17 ..     386     400 ..     385     406 .. 0.75
   2 ?    1.2   0.0      0.24   8.7e+02       2      12 ..     414     424 ..     413     432 .. 0.85
   3 ?    1.4   0.0      0.22   7.9e+02       3      17 ..     443     457 ..     442     466 .. 0.79
   4 ?    3.7   0.0     0.038   1.4e+02       3      15 ..     499     511 ..     498     518 .. 0.81
   5 ?   -0.8   0.0       1.1   4.1e+03       3      14 ..     527     538 ..     526     542 .. 0.80
   6 ?    2.3   0.0      0.11   3.9e+02       2      16 ..     554     568 ..     553     575 .. 0.81
   7 ?    0.1   0.0      0.56     2e+03       2      12 ..     582     592 ..     582     601 .. 0.83
   8 ?   -1.8   0.0       2.4   8.5e+03       4      17 ..     612     625 ..     610     629 .. 0.76
   9 ?    0.1   0.0      0.59   2.1e+03       2      14 ..     638     650 ..     638     658 .. 0.81

  Alignments for each domain:
  == domain 1  score: 6.7 bits;  conditional E-value: 0.004
       LRR_1   2 LrhLdLsnnpllglpp 17 
                 Lr+LdLs+n + g ++
  KOO21333.1 386 LRTLDLSDNKI-GPES 400
                 9********98.4444 PP

  == domain 2  score: 1.2 bits;  conditional E-value: 0.24
       LRR_1   2 LrhLdLsnnpl 12 
                 L++LdLs n++
  KOO21333.1 414 LTTLDLSTNSI 424
                 89*****9997 PP

  == domain 3  score: 1.4 bits;  conditional E-value: 0.22
       LRR_1   3 rhLdLsnnpllglpp 17 
                 ++L+L++n++ + ++
  KOO21333.1 443 TTLYLRGNNIKDEGA 457
                 58******9966655 PP

  == domain 4  score: 3.7 bits;  conditional E-value: 0.038
       LRR_1   3 rhLdLsnnpllgl 15 
                 ++LdL+nn++++ 
  KOO21333.1 499 TTLDLENNSIGDE 511
                 68*******9654 PP

  == domain 5  score: -0.8 bits;  conditional E-value: 1.1
       LRR_1   3 rhLdLsnnpllg 14 
                 ++L L++n++++
  KOO21333.1 527 TTLSLGGNNIGD 538
                 589*****9865 PP

  == domain 6  score: 2.3 bits;  conditional E-value: 0.11
       LRR_1   2 LrhLdLsnnpllglp 16 
                 L++LdLs np+++ +
  KOO21333.1 554 LTRLDLSLNPIGDNG 568
                 89********97655 PP

  == domain 7  score: 0.1 bits;  conditional E-value: 0.56
       LRR_1   2 LrhLdLsnnpl 12 
                 L++L L nn++
  KOO21333.1 582 LTELSLWNNNI 592
                 899***99987 PP

  == domain 8  score: -1.8 bits;  conditional E-value: 2.4
       LRR_1   4 hLdLsnnpllglpp 17 
                 +L L++n++++ ++
  KOO21333.1 612 KLFLNGNNIEDDGA 625
                 6889***9987655 PP

  == domain 9  score: 0.1 bits;  conditional E-value: 0.59
       LRR_1   2 LrhLdLsnnpllg 14 
                 L+ L L++n+l++
  KOO21333.1 638 LTILSLGQNNLGD 650
                 889*******965 PP

>> SpoU_sub_bind  RNA 2'-O ribose methyltransferase substrate binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.6   0.0     0.094   3.4e+02       3      26 ..     427     450 ..     427     455 .. 0.86
   2 !    8.6   0.0   0.00062       2.2       3      28 ..     455     480 ..     454     501 .. 0.79
   3 ?    1.2   0.1      0.13   4.6e+02       4      31 ..     568     595 ..     568     612 .. 0.75
   4 !    4.8   0.1    0.0093        33       3      42 ..     595     635 ..     595     642 .. 0.75

  Alignments for each domain:
  == domain 1  score: 1.6 bits;  conditional E-value: 0.094
  SpoU_sub_bind   3 yGlhaVleaLksgrriekllvteg 26 
                    +G  a+ eaLk +  +++l++  +
     KOO21333.1 427 EGAFAIAEALKVNAVVTTLYLRGN 450
                    7999********999****99877 PP

  == domain 2  score: 8.6 bits;  conditional E-value: 0.00062
  SpoU_sub_bind   3 yGlhaVleaLksgrriekllvtegra 28 
                    +G +a+ eaLk +  ++kl+++++  
     KOO21333.1 455 EGAKAIAEALKVNAVVTKLWLQSNGI 480
                    799**********99********933 PP

  == domain 3  score: 1.2 bits;  conditional E-value: 0.13
  SpoU_sub_bind   4 GlhaVleaLksgrriekllvtegradkr 31 
                    G +a+ eaLk +  +++l + +++ +++
     KOO21333.1 568 GAKAIAEALKVNAVLTELSLWNNNIGPE 595
                    7899*******99899999999977777 PP

  == domain 4  score: 4.8 bits;  conditional E-value: 0.0093
  SpoU_sub_bind   3 yGlhaVleaLksgrriekllvteg.radkrleellklakkr 42 
                    +G  a+ eaLk +  ++kl+++ +  +d+  + + +++k +
     KOO21333.1 595 EGAIAIAEALKVNAVVTKLFLNGNnIEDDGAKAIAEALKVN 635
                    577799******999*********65555556666666544 PP

>> LRR_8  Leucine rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.5   0.5    0.0079        29      27      37 ..     386     396 ..     385     426 .. 0.41
   2 ?    1.1   0.0     0.092   3.3e+02       4      13 ..     443     452 ..     432     461 .. 0.66
   3 ?    0.7   1.3      0.13   4.5e+02       5      15 ..     500     510 ..     496     564 .. 0.56
   4 ?    1.6   0.1     0.064   2.3e+02       3      13 ..     582     592 ..     580     593 .. 0.87
   5 ?    4.5   0.3    0.0084        30       4      38 ..     611     649 ..     608     660 .. 0.71

  Alignments for each domain:
  == domain 1  score: 4.5 bits;  conditional E-value: 0.0079
                 --EEE--SS-- CS
       LRR_8  27 LkvLdLsnNll 37 
                 L++LdLs+N++
  KOO21333.1 386 LRTLDLSDNKI 396
                 44444444444 PP

  == domain 2  score: 1.1 bits;  conditional E-value: 0.092
                 SEEE-TTS-- CS
       LRR_8   4 tsLdLsnNrl 13 
                 t+L+L+ N++
  KOO21333.1 443 TTLYLRGNNI 452
                 3444444444 PP

  == domain 3  score: 0.7 bits;  conditional E-value: 0.13
                 EEE-TTS--SE CS
       LRR_8   5 sLdLsnNrlts 15 
                 +LdL nN++ +
  KOO21333.1 500 TLDLENNSIGD 510
                 44444444433 PP

  == domain 4  score: 1.6 bits;  conditional E-value: 0.064
                 -SEEE-TTS-- CS
       LRR_8   3 LtsLdLsnNrl 13 
                 Lt+L+L+nN++
  KOO21333.1 582 LTELSLWNNNI 592
                 89999999998 PP

  == domain 5  score: 4.5 bits;  conditional E-value: 0.0084
                 SEEE-TTS--SEE-TTSSTT.-T...T--EEE--SS--- CS
       LRR_8   4 tsLdLsnNrltslddeaFkg.ls...nLkvLdLsnNllt 38 
                 t+L L+ N++++ + +a    l+    L++L+L++N+l 
  KOO21333.1 611 TKLFLNGNNIEDDGAKAIAEaLKvnvVLTILSLGQNNLG 649
                 788999999988887766553332225888999999885 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (670 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       425  (0.0237046); expected 358.6 (0.02)
Passed bias filter:                      330  (0.0184059); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.62u 0.26s 00:00:00.88 Elapsed: 00:00:00.44
# Mc/sec: 4585.23
//
Query:       KOO21334.1  [L=233]
Description: erythroblast NAD (+)--arginine ADP-ribosyltransferase-like protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.2e-15   56.6   0.0      3e-15   56.1   0.0    1.1  1  ART             NAD:arginine ADP-ribosyltransferase
    2.1e-08   33.8   0.0    6.3e-08   32.2   0.0    1.8  1  ADPrib_exo_Tox  ADP-ribosyltransferase exoenzyme


Domain annotation for each model (and alignments):
>> ART  NAD:arginine ADP-ribosyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.1   0.0   3.3e-19     3e-15      56     215 ..      26     178 ..       4     185 .. 0.84

  Alignments for each domain:
  == domain 1  score: 56.1 bits;  conditional E-value: 3.3e-19
         ART  56 elpegfkdehgiAllaYtssselyrelneavreaGrsreeylsnfdfkalhfyLtraLqlLrkdsqrcsqvyRgvkglrfsrakkgksvRfgqFtsssl 154
                 +  ++  ++   Al+aYt + e+yre+n+  re        l+   ++a+   +  aL+  r+ ++    +yRg    +++  +kg+   f q+ts+sl
  KOO21334.1  26 KPSARETKDMLFALHAYTRN-EIYREFNRDHRE--------LRPELWAAVSNTMRCALKNARS-PDAGATLYRGDSRDEYN-LRKGQLDCFSQYTSASL 113
                 555555677789*******9.***********6........888889*************999.888899****9978887.8889899********** PP

         ART 155 kkkvaeefgqd.tllsikt...clgvpIkefskfpsedevLIppfevFkvtnlskeegkskiqLr 215
                 +++vae f ++  +++i        + Ik+ sk+p+edevLI p  +F v  + ++     + Lr
  KOO21334.1 114 NRRVAESFAKGkWIFEITGvphTRCATIKHASKYPNEDEVLIAPGSTFCVESVDESTTPKVVRLR 178
                 ******99886257877642226799************************999888887777775 PP

>> ADPrib_exo_Tox  ADP-ribosyltransferase exoenzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.2   0.0   7.1e-12   6.3e-08     100     175 ..      95     169 ..      17     176 .. 0.81

  Alignments for each domain:
  == domain 1  score: 32.2 bits;  conditional E-value: 7.1e-12
                     HHHHHTT-EEEESS-EEEESSSS.SCCCTTTSEEEEEEE-TTSBEEE-CCCSSSGCG-EEEE-TTEEEEEEEEEEE CS
  ADPrib_exo_Tox 100 feakvkgkvfkergyvSTslvkdtaasfggreilleltvpkgsegayisplslypgeaEvLlprgltykinkitlv 175
                     + +  kg+   +  y S sl++ +a+sf++ + ++e+t +  +  a+i+  s+yp+e EvL+  g+t+ ++++++ 
      KOO21334.1  95 Y-NLRKGQLDCFSQYTSASLNRRVAESFAKGKWIFEITGVPHTRCATIKHASKYPNEDEVLIAPGSTFCVESVDES 169
                     3.366899999***********************************************************998764 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (233 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       447  (0.0249317); expected 358.6 (0.02)
Passed bias filter:                      400  (0.0223102); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.40u 0.26s 00:00:00.66 Elapsed: 00:00:00.39
# Mc/sec: 1795.33
//
Query:       KOO21335.1  [L=101]
Description: 30s ribosomal protein s17 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.8e-21   75.0   0.1    4.6e-21   74.7   0.1    1.1  1  Ribosomal_S17  Ribosomal protein S17


Domain annotation for each model (and alignments):
>> Ribosomal_S17  Ribosomal protein S17
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   74.7   0.1   2.6e-25   4.6e-21       1      67 [.      17      83 ..      17      84 .. 0.98

  Alignments for each domain:
  == domain 1  score: 74.7 bits;  conditional E-value: 2.6e-25
                   EEEEE--STTEEEEEEEEEEEETTTTEEEEEEEEEEEE-TTTS--TT-EEEEEEECECSSSEEEEEE CS
  Ribosomal_S17  1 GvVvsdkmdkTvvVrverlvkhpkykkyvkrrkkylahdennsvkvGDiVrieecrPlSktkrfvvv 67
                   G+V+s  ++kT+vV+v rl+++pk++k v+rr+k+ ahde n +  GDiVr e +r lSk+k + v 
     KOO21335.1 17 GRVTSVANNKTAVVQVPRLFRDPKVGKDVRRRTKMWAHDEFNLCALGDIVRLEPSRALSKKKAHIVA 83
                   99**************************************************************997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (101 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       374  (0.0208601); expected 358.6 (0.02)
Passed bias filter:                      350  (0.0195214); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.34u 0.25s 00:00:00.59 Elapsed: 00:00:00.38
# Mc/sec: 806.24
//
Query:       KOO21336.1  [L=822]
Description: constitutive coactivator of peroxisome proliferator-activated receptor gamma [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.017   14.6   0.0      0.029   13.9   0.0    1.2  1  XPG_I_2   XPG domain containing
       0.12   12.7   0.0       0.31   11.4   0.0    1.8  1  XPG_I     XPG I-region


Domain annotation for each model (and alignments):
>> XPG_I_2  XPG domain containing
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.0   3.2e-06     0.029      23      54 ..     168     200 ..     138     214 .. 0.88

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 3.2e-06
     XPG_I_2  23 tevvpgEADkfcAvlArklgc.aVLTsDSDLlv 54 
                 ++   gEAD ++A++    gc aVL +DSD +v
  KOO21336.1 168 VHYTAGEADREIASYCVHRGCaAVLGKDSDYFV 200
                 66778**********96666637*******887 PP

>> XPG_I  XPG I-region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   3.5e-05      0.31       4      45 ..     165     206 ..     162     250 .. 0.85

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 3.5e-05
                 T--EEE-SS-HHHHHHHHHHTTSSSEEE-SSSHHHHTT-SEE CS
       XPG_I   4 gipyvvApgEAEAqcayLqkkglvdaviseDsDlllFGapkv 45 
                 g +++   gEA+ ++a  + +  + av+ +DsD +++  p+ 
  KOO21336.1 165 GCEVHYTAGEADREIASYCVHRGCAAVLGKDSDYFVLPVPCY 206
                 67888899***************************9876655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (822 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       513  (0.0286129); expected 358.6 (0.02)
Passed bias filter:                      309  (0.0172346); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.59u 0.27s 00:00:00.86 Elapsed: 00:00:00.44
# Mc/sec: 5605.68
//
Query:       KOO21337.1  [L=715]
Description: 3-oxoacid transferase 1 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    6.6e-97  323.1   0.5    2.1e-60  203.8   0.1    2.2  2  CoA_trans        Coenzyme A transferase
    2.3e-13   50.2   0.3    3.4e-13   49.6   0.3    1.2  1  DUF1295          Protein of unknown function (DUF1295)
      4e-05   23.9   0.0    9.6e-05   22.7   0.0    1.6  1  ICMT             Isoprenylcysteine carboxyl methyltransferase
    0.00019   21.4   0.0    0.00044   20.2   0.0    1.5  1  AcetylCoA_hyd_C  Acetyl-CoA hydrolase/transferase C-terminal 
     0.0011   19.3   1.6     0.0045   17.4   0.1    2.4  2  PEMT             Phospholipid methyltransferase
  ------ inclusion threshold ------
      0.038   14.2   0.0       0.99    9.7   0.0    2.3  2  Crystall         Beta/Gamma crystallin
      0.056   12.2   0.1        0.2   10.4   0.2    1.7  1  ERG4_ERG24       Ergosterol biosynthesis ERG4/ERG24 family
       0.18   11.8   0.0       0.35   10.8   0.0    1.4  1  Steroid_dh       3-oxo-5-alpha-steroid 4-dehydrogenase


Domain annotation for each model (and alignments):
>> CoA_trans  Coenzyme A transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  203.8   0.1   9.3e-64   2.1e-60      28     216 ..     250     452 ..     246     453 .. 0.99
   2 !  117.7   0.1     2e-37   4.6e-34       4     195 ..     488     666 ..     485     693 .. 0.90

  Alignments for each domain:
  == domain 1  score: 203.8 bits;  conditional E-value: 9.3e-64
                 HHHHHHHHHHHHTTTSEEEEESTTTE..ECCHHHHHTTTEEEEEESCTTBBCEHHHHHHHHTTSSEEEEHHHHHHHHHHHHHHHTEETTEEEESTTTTS CS
   CoA_trans  28 iPealiaalarsgvkdltviiseagv..lglgplllngsvkkviasyggetvnprfgkqflsgelefellpqgtlaerlraGgaglpelgfltntgigt 124
                  Pe+liaal+r+g ++ltv++++agv  +glg+ll++g++k++i+sy+ge  n++f++ +l gele+el+pqgtlaer+raGg+g+p  +f+t+   gt
  KOO21337.1 250 VPENLIAALVRKGTSELTVVSNNAGVddFGLGLLLKTGQIKRMISSYVGE--NKTFERLYLTGELEVELTPQGTLAERMRAGGSGIP--AFYTPCAAGT 344
                 7*************************************************..***********************************..********** PP

                 HGGTT.................ESEEEEETTEEEEEEESSSEEEEEEECCEEETTCSEESSGGGHTTHSHHHHHHEEEEEEEEEEEECTTSSECCCESB CS
   CoA_trans 125 lvapk.................lkkvpgfgGaeyilepalkadvalikaskadeegnlvfeksagnfnkpaiaeaakvtileveeivekgkldpekvli 206
                 +++++                 + ++++f+G++++le+a+  d+ ++ka+kad+ gnlvf+++ +nfn  ++a+a+k++i+eveeiv+ g ++p++v+ 
  KOO21337.1 345 IIQEGgvpikyrkdgsveiessPREIRNFNGRDFVLEQAIVGDFSIVKAWKADTRGNLVFRGTGRNFN-VDAAMAGKICIAEVEEIVQAGAIPPDQVHL 442
                 **********************88********************************************.999*************************** PP

                 TGGGHSEEEE CS
   CoA_trans 207 Pgvlvdavve 216
                 Pgv+v++vv+
  KOO21337.1 443 PGVYVHRVVQ 452
                 ********97 PP

  == domain 2  score: 117.7 bits;  conditional E-value: 2e-37
                 HHHHHCTT--TTEEEEE-SBTTBTHHHHHHHHHHHHTTTSEEEEESTTTEECCHHHHHTTTEEEEEESCTTBBCEHHHHHHHHTTSSEEEEHHHHHHHH CS
   CoA_trans   4 aaeavakeikdGmtvavGGFgligiPealiaalarsgvkdltviiseagvlglgplllngsvkkviasyggetvnprfgkqflsgelefellpqgtlae 102
                 + +++a+e++dGm+v++G    igiP +l+ + +    +  + ++se+g+lg+gp++++g+++ +++++g+etv++  g++ +s++ +f  +++ + ++
  KOO21337.1 488 IVKRAAMEFEDGMYVNLG----IGIP-TLASNFVSP--NVRIELQSENGLLGIGPYPIKGQEDPDMINAGKETVTSIPGSSTFSSSTSFG-MIRAGKVQ 578
                 6688999***********....****.********9..99999***********************************************.******** PP

                 HHHHHHHTEETTEEEESTTTTSHGGTTESEEEEETTEEEEEEESSSEEEEEEECCEEETTCSEESSGGGHTTHSHHHHHHEEEEEEEEEEEE....C CS
   CoA_trans 103 rlraGgaglpelgfltntgigtlvapklkkvpgfgGaeyilepalkadvalikaskadeegnlvfeksagnfnkpaiaeaakvtileveeiv....e 195
                  + +G++++  +g+l+n++i+    +k  +v+g+gGa++++++  + +v++++++ + +++++  ++s++ ++k +++  +++t l+v+++      
  KOO21337.1 579 LTLLGALEVASNGDLANWIIP----GK--MVKGMGGAMDLVSSGSR-VVVTMEHTAKGGKHKILPRCSLPLTGKRVVH--RIITELGVFDVMpgreH 666
                 *********************....66..****************6.*******************************..***********854430 PP

>> DUF1295  Protein of unknown function (DUF1295)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.6   0.3   1.5e-16   3.4e-13      44     211 ..      65     230 ..      28     249 .. 0.67

  Alignments for each domain:
  == domain 1  score: 49.6 bits;  conditional E-value: 1.5e-16
     DUF1295  44 llLvvlWglRLalhllrrtlkkgeDkryeelrkelgkt....iallsllvvfvlQavllylvalpvllaaaskeeqalkaldviglalwlvgivleala 138
                 ++ v+++g+RL  +ll+r l+ +   r++e r+++++        l+ + + +  a l  ++a p +++ ++   +a ++l ++ +  + +g++l+a +
  KOO21337.1  65 AAAVLVYGVRLNAFLLWRELNIP---RFREFREKVEARavsaGGRLKRTPFVLSCAALYACLAAPAIVTSST---AATGVLTTALVGAAWFGLLLAASG 157
                 566889**************997...6777777776664322223344445566666667788888777654...3334444444444569******** PP

     DUF1295 139 DqQlsafkkdpankgkvldsGLwrysRHPNYfgealiWwglflialealeg.lealaiagpllltlllvfvsgi 211
                 D  +s  k++   +  +++sG +ry RHPNY ge+++W +  l+a+ +++   + +++a   +l   l  ++gi
  KOO21337.1 158 DLVKSYVKAKE-GADVLVTSGPYRYFRHPNYTGEQILWTSSTLAAFASAARgGLGALLANGGWLGASLFGWAGI 230
                 **988777665.57789***********************9998877643302333444445555555556555 PP

>> ICMT  Isoprenylcysteine carboxyl methyltransferase (ICMT) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.7   0.0   4.3e-08   9.6e-05      32      60 ..     170     199 ..     138     210 .. 0.69

  Alignments for each domain:
  == domain 1  score: 22.7 bits;  conditional E-value: 4.3e-08
        ICMT  32 dhklvksglykylrHPnYll.fvilelatl 60 
                    lv+sg+y+y+rHPnY++  +++  +tl
  KOO21337.1 170 ADVLVTSGPYRYFRHPNYTGeQILWTSSTL 199
                 3468**************983355655555 PP

>> AcetylCoA_hyd_C  Acetyl-CoA hydrolase/transferase C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.2   0.0     2e-07   0.00044      35     127 ..     578     661 ..     558     686 .. 0.81

  Alignments for each domain:
  == domain 1  score: 20.2 bits;  conditional E-value: 2e-07
                      EEEEEE-SEEETTS-EESSECTTCCTCGGTTHHHHHHHHHHSTT-EEEEE--SEETTTTEESEESS-STTSSECE-TTT-SEEEETTEEEE-T CS
  AcetylCoA_hyd_C  35 vvsinsalevdltGqvnseslggrvvsGvGgqldFvrgaalskggksiialpStakkgeiSrIvpslkegahvtttrhdvdyvvTEyGiadLr 127
                        ++  alev  +G  +   + g++v G+Gg +d v+   +      +++++ tak g+  +I+p+++      t +  v+ ++TE G+ d+ 
       KOO21337.1 578 QLTLLGALEVASNGDLANWIIPGKMVKGMGGAMDLVSSGSR-----VVVTMEHTAKGGK-HKILPRCS---LPLTGKRVVHRIITELGVFDVM 661
                      5566778999999999999999*************976655.....9********9998.8*******...77778888**********9875 PP

>> PEMT  Phospholipid methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.2   0.2       0.6   1.3e+03      47      80 ..     119     155 ..     113     169 .. 0.68
   2 !   17.4   0.1     2e-06    0.0045      40      69 ..     171     200 ..     157     216 .. 0.80

  Alignments for each domain:
  == domain 1  score: -0.2 bits;  conditional E-value: 0.6
        PEMT  47 iYrylnnPeyvgstl...gflGlaLitgsaaglllal 80 
                 +Y  l  P  v+s     g+l +aL+   + gllla+
  KOO21337.1 119 LYACLAAPAIVTSSTaatGVLTTALVGAAWFGLLLAA 155
                 5667777777766541114555778877777777775 PP

  == domain 2  score: 17.4 bits;  conditional E-value: 2e-06
        PEMT  40 dklvtsGiYrylnnPeyvgstlgflGlaLi 69 
                 d lvtsG+Yry+++P y+g  + +   +L+
  KOO21337.1 171 DVLVTSGPYRYFRHPNYTGEQILWTSSTLA 200
                 479****************99888877776 PP

>> Crystall  Beta/Gamma crystallin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   0.0   0.00044      0.99      37      65 ..     173     201 ..     160     209 .. 0.85
   2 ?    1.6   0.0      0.14   3.2e+02      49      67 ..     371     389 ..     369     400 .. 0.67

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 0.00044
                 EEEESEEEEEEETTTEEEEEEE-SEEESS CS
    Crystall  37 kVlsGaWvlYekpnfrGrqylleegeypd 65 
                  V sG +  + +pn++G+q+l+ +     
  KOO21337.1 173 LVTSGPYRYFRHPNYTGEQILWTSSTLAA 201
                 699*****************998776655 PP

  == domain 2  score: 1.6 bits;  conditional E-value: 0.14
                 TTTEEEEEEE-SEEESSCC CS
    Crystall  49 pnfrGrqylleegeypdls 67 
                  nf+Gr ++le+  + d+s
  KOO21337.1 371 RNFNGRDFVLEQAIVGDFS 389
                 69*********65444443 PP

>> ERG4_ERG24  Ergosterol biosynthesis ERG4/ERG24 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.2   8.8e-05       0.2     281     377 ..     111     199 ..     103     206 .. 0.64

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 8.8e-05
  ERG4_ERG24 281 PftYslqtlYLsvh.PselgwstvlvailvvlligyyiFrsansqknnFRtnPedpklkllkyiqtktGsk.LlvsGWyglarkinYlgDwlqslswsL 377
                 Pf+ s  +lY     P  +  st ++++l   l+g   F +  +   +           +  y+++k+G   L++sG y++ r++nY+g+ ++  s +L
  KOO21337.1 111 PFVLSCAALYACLAaPAIVTSSTAATGVLTTALVGAAWFGLLLAASGDL----------VKSYVKAKEGADvLVTSGPYRYFRHPNYTGEQILWTSSTL 199
                 6666666666555545555555556666665666655555544333222..........25799999998626789*************9876555555 PP

>> Steroid_dh  3-oxo-5-alpha-steroid 4-dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   0.00016      0.35      68     105 ..     165     202 ..     129     208 .. 0.74

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00016
  Steroid_dh  68 kegetkykiprgglFelvsapnyfgEilewigyalvtk 105
                 k++e + ++ + g + ++  pny+gE + w + +l++ 
  KOO21337.1 165 KAKEGADVLVTSGPYRYFRHPNYTGEQILWTSSTLAAF 202
                 34455556667889*****************9999875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (715 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       394  (0.0219756); expected 358.6 (0.02)
Passed bias filter:                      271  (0.0151152); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.58u 0.28s 00:00:00.86 Elapsed: 00:00:00.44
# Mc/sec: 4851.66
//
Query:       KOO21338.1  [L=591]
Description: hypothetical protein Ctob_003130, partial [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.3e-06   29.0   0.1    1.5e-05   25.6   0.0    2.6  2  TIR_2           TIR domain
  ------ inclusion threshold ------
       0.11   11.5  30.9       0.13   11.2  30.9    1.1  1  THRAP3_BCLAF1   THRAP3/BCLAF1 family
       0.96    8.8   0.0       0.96    8.8   0.0    2.5  2  RNA_pol_Rpb1_5  RNA polymerase Rpb1, domain 5
        1.7    8.8   5.0        6.3    7.0   0.0    3.2  3  VWA             von Willebrand factor type A domain


Domain annotation for each model (and alignments):
>> TIR_2  TIR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.6   0.0   3.3e-09   1.5e-05      12     113 ..      75     178 ..      69     182 .. 0.79
   2 ?   -0.7   0.3      0.46     2e+03      36      63 ..     299     328 ..     274     355 .. 0.63

  Alignments for each domain:
  == domain 1  score: 25.6 bits;  conditional E-value: 3.3e-09
       TIR_2  12 waeklaeaLeaagirvwldrwdlkpgedweeeieeaiess......dvvlvvlspaylesewcreeleaaleaaeegkkrlipvllepekpplaslqyi 104
                 +a+ l e L ++g++++    +++pg dwe+++ +   +       +v++++l+    +s+ c +e+++a++     + +l+pv++e++ p+ +  q+ 
  KOO21338.1  75 YAKGLMEFLHERGLQCFSGL-QVPPGVDWETFMLRLTGENgkrekpKVLIIILTAGLYQSKPCLKEIDTAIK----HEVELLPVRFEDKLPG-KIDQWT 167
                 5788999*********8555.89**********77655434444458999999999999************7....3455*******64554.888899 PP

       TIR_2 105 dlskk.de.ea 113
                 +l+ + +e  +
  KOO21338.1 168 NLKGQeWEmRK 178
                 98865766555 PP

  == domain 2  score: -0.7 bits;  conditional E-value: 0.46
       TIR_2  36 pgedweeeieeaiess..dvvlvvlspayl 63 
                   e +++e++eai++   ++ l+ ++++++
  KOO21338.1 299 MREAIRAEMREAIREEtaAKSLAEMGEDSA 328
                 455667777777776432555666666666 PP

>> THRAP3_BCLAF1  THRAP3/BCLAF1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2  30.9     3e-05      0.13     173     424 ..     281     524 ..     173     561 .. 0.59

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 3e-05
  THRAP3_BCLAF1 173 degrsrlspkeksPlrrspaksfsfegkwhekeek.sqsprrgseefsarssfqkRYleeqksrkyghesengkeke.qkearlekekskrkskwk 266
                     e+r+    + ++ +r  + ++++ e      ee  ++s  +  e++++   + k Y +e   rk+++ +  ++e e ++ a  + ++  + +k +
     KOO21338.1 281 AETREAIRAEMREAIRAEMREAIRAEMREAIREETaAKSLAEMGEDSAK--RWEKTYRAEMAARKTAKVEAEAEEIEeAESAAMNAGEAVQMAKEN 374
                    2333333344444444444444444432222223435666666666544..578899999999999988888888776788888888888888888 PP

  THRAP3_BCLAF1 267 eehaldsyqekeeqrskeeqesrsaesespesykyrhkfekklaefeksfsdgskekyeeeekkskskvsl.gnresqefseerarkteelqvees 361
                     ++a d + + ee+r+ +e e +++++e++e+ k ++++++ ++e+eks++++++ + +   +k+ +k ++  + e+ +  e  ar++ e++    
     KOO21338.1 375 LKKAEDRFRKAEEERKRRE-EAAKRRREEEERRKTEEERRR-REEEEKSLQAERAAQEAA--EKMATKKAAeAEAEAIKQAELAARNSGEGAAA-V 465
                    8888888888888877655.778888888888888888888.889998888777665554..45555555424555555555566666664433.2 PP

  THRAP3_BCLAF1 362 akekskkeeaastdemeedvylerikkkkeersakevklrkeselsspsneneesreklavke 424
                    +k k+k +++a+ ++  e++++ r  k+  +   +++k++k++e+++  +  ++ + + ++ e
     KOO21338.1 466 QKAKEKAAQQAK-KDAAEEAVKFR--KEASTV-IEDAKAKKKAEAEEAAKTLSDVESMINALE 524
                    344333333222.22333333333..333343.457788888887774444444444444443 PP

>> RNA_pol_Rpb1_5  RNA polymerase Rpb1, domain 5
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?  -12.8  15.0         4   1.8e+04     150     151 ..     404     464 ..     336     533 .. 0.47
   2 ?    8.8   0.0   0.00021      0.96      10      50 ..     534     574 ..     528     581 .. 0.89

  Alignments for each domain:
  == domain 1  score: -12.8 bits;  conditional E-value: 4
                     E...........................................................C CS
                     x...........................................................x RF
  RNA_pol_Rpb1_5 150 k...........................................................g 151
                     +                                                           +
      KOO21338.1 404 ErrkteeerrrreeeekslqaeraaqeaaekmatkkaaeaeaeaikqaelaarnsgegaaA 464
                     1233333333333344444444444444444444444444444444444444444444431 PP

  == domain 2  score: 8.8 bits;  conditional E-value: 0.00021
                     HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTEEEETTSEE CS
                     xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  RNA_pol_Rpb1_5  10 htmggReGLiDtAvkTaesGYlqRrlvkaledvvvkyddtv 50 
                      + gg + LiD Avk ++s  +q +   +l d++++ d  +
      KOO21338.1 534 EAAGGVKSLIDMAVKHSDSALVQAQFAGVLRDLCISDDIAI 574
                     578999*****************************998665 PP

>> VWA  von Willebrand factor type A domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.0   0.0    0.0014       6.3      94     140 ..     110     177 ..     105     210 .. 0.73
   2 ?    1.4   0.3     0.074   3.3e+02      60     101 ..     343     384 ..     297     393 .. 0.82
   3 ?   -0.1   0.8      0.22   9.8e+02      71     103 ..     454     484 ..     427     536 .. 0.71

  Alignments for each domain:
  == domain 1  score: 7.0 bits;  conditional E-value: 0.0014
                 HHHGTSSTTSEEEEEEEESS--CSSHTHHHHHHHHGCTEEEEEEEE.....................S CS
         VWA  94 kssagaRenakkviilltdGksndgdpkeaaneakeqgikvfavGv.....................g 140
                 ++++g+Re+ k +ii+lt G  +++  ++++++a +  +++  v +                     +
  KOO21338.1 110 TGENGKREKPKVLIIILTAGLYQSKPCLKEIDTAIKHEVELLPVRFedklpgkidqwtnlkgqewemR 177
                 56789999**************9999999999999999999999997777755555555555555552 PP

  == domain 2  score: 1.4 bits;  conditional E-value: 0.074
                 HHHHHHHHHHTGSGGGGSSC-HHHHHHHHHHHHHHHHGTSST CS
         VWA  60 skeellsalnnlkysgggttntgkalkyaleklfkssagaRe 101
                 + +++  + ++++ +++  +n g+a++ a e+l k++ + R+
  KOO21338.1 343 KTAKVEAEAEEIEEAESAAMNAGEAVQMAKENLKKAEDRFRK 384
                 457888888899999999999**********99999888665 PP

  == domain 3  score: -0.1 bits;  conditional E-value: 0.22
                 G.SGGGGSSC-HHHHHHHHHHHHHHHHGTSSTTS CS
         VWA  71 l.kysgggttntgkalkyaleklfkssagaRena 103
                 + + sg g + + ka ++a++++ k +a+   +a
  KOO21338.1 454 AaRNSGEGAAAVQKAKEKAAQQAKKDAAE---EA 484
                 24667777777888888888888888777...22 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (591 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      3303  (0.184227); expected 358.6 (0.02)
Passed bias filter:                      767  (0.0427799); expected 358.6 (0.02)
Passed Vit filter:                       299  (0.0166769); expected 17.9 (0.001)
Passed Fwd filter:                       111  (0.00619109); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 1.99u 0.42s 00:00:02.41 Elapsed: 00:00:00.59
# Mc/sec: 3030.04
//
Query:       KOO21339.1  [L=1067]
Description: hypothetical protein Ctob_003128 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      6e-07   28.5  10.2    2.1e-06   26.8   6.4    2.9  3  TRP       Transient receptor potential (TRP) ion channel
  ------ inclusion threshold ------
       0.19   10.3   0.0        0.3    9.7   0.0    1.2  1  THOC2_N   THO complex subunit 2 N-terminus
        0.6   10.5   0.0        0.6   10.5   0.0    4.1  3  DUF4199   Protein of unknown function (DUF4199)
          3    8.2   0.0          3    8.2   0.0    4.1  6  DUF4064   Protein of unknown function (DUF4064)


Domain annotation for each model (and alignments):
>> TRP  Transient receptor potential (TRP) ion channel
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.1      0.16   7.1e+02     211     271 ..     254     332 ..     216     339 .. 0.51
   2 ?    1.9   0.0     0.016        71     175     255 ..     458     650 ..     389     737 .. 0.72
   3 !   26.8   6.4   4.7e-10   2.1e-06     314     395 ..     758     835 ..     718     841 .. 0.85

  Alignments for each domain:
  == domain 1  score: -1.4 bits;  conditional E-value: 0.16
         TRP 211 fqllvlclfeftqrdsaa.................vvvlAvillalflgvllffafrvlitarkskrl.hknpaylLys 271
                 f++++ c f + q+ +                   v+ +++  +++ +++++++ + ++++ rk+ +   ++ + +Ly+
  KOO21339.1 254 FVFSTSCHFLLAQGRAIRdteegeilginqenlniVLGVGGASFLASVTIMVYMRVITYRMVRKYLEReVQELEEKLYQ 332
                 3333333343333333334444444444444444434444444444444555554444444444433324444556665 PP

  == domain 2  score: 1.9 bits;  conditional E-value: 0.016
         TRP 175 llarkklikedrlkefrknwlgilkgallrlilifffqllvlclfeftqrdsaa............................................. 228
                 +la +  + ++ ++++ + ++ +  g ll ++++f+ +++  ++  f+ +d  +                                             
  KOO21339.1 458 MLATMTTTGQEVVDYVSQALRATYIGFLLVVVIVFYIPVSKAAISVFVCKDRQCglgewfpvqspgtdativtyltnfagtaikdlvlselqpgnnltt 556
                 333334444566667788888888888888888888888888888888777777788888888888888888888888888888888888888888888 PP

         TRP 229 ...................................................................vvvlAvillalflgvllffafrvlita 255
                                                                                     +  Av++l++f+  +++++++   + 
  KOO21339.1 557 sdavfdlgpatscqacqwlsgpgttvdsegrlrsmcpaylsdalcapttslrlsaspaiscsqqwpyYIPGAVLTLIMFTLGVPYMFYQLTNRH 650
                 8888888888888888888888888888888888888888888888888888888888888888876666677777777766666655544333 PP

  == domain 3  score: 26.8 bits;  conditional E-value: 4.7e-10
         TRP 314 sGkvQvialliiEllylvlliwlrPyedkrtnvlniiisvvkvlnvilllaFseefglseivktvvGvvlivinavlalvll 395
                 s+++  ++ll i  ++++l ++ rPy dkr  +++i +s+++++n++ll++F  ++ ++      +G++l+v+n v+ ++ l
  KOO21339.1 758 SPLIGPVLLLGIHSFMFILSVYARPYIDKRPDLFAISLSLANMFNFVLLVVFAMRIPVPD----WMGWILLVVNVVFPILSL 835
                 566666899*******************************************99998886....79********99976544 PP

>> THOC2_N  THO complex subunit 2 N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   0.0   6.7e-05       0.3     277     404 ..     297     428 ..     293     434 .. 0.78

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 6.7e-05
     THOC2_N 277 llylaAlLIkiGfislsdlYphLspddeemealkekyekeleekssekgsanaLamagaLsdddDtep....kkekeakkkekakkkeeeekeeepepe 371
                 +l  +++ +    i ++ + ++L+++ +e+e+   + +++le+k   ++  na  + + L++dd +++     +++ ++ +++  + e  ++++ + p+
  KOO21339.1 297 FLASVTIMVYMRVITYRMVRKYLEREVQELEEKLYQVKNSLEAKAGGEAMPNASDLKAILEKDDHEKDfvggRAKDVEEYARQMHERELHKSNRVNLPT 395
                 56667888888899999999************************888899***********66655559998555556666666667777777777777 PP

     THOC2_N 372 klkd.qkiqLlkaLLaiGalpeslfiLgryPwla 404
                  l+  +k+  +  + ++Gal   l +++  P ++
  KOO21339.1 396 -LSAfMKWVSMWLFFSLGALLLWLRVFEMLPAVV 428
                 .556688877777777887777777777666665 PP

>> DUF4199  Protein of unknown function (DUF4199)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.0   0.00013       0.6      31     120 ..     248     335 ..     219     361 .. 0.69
   2 ?   -5.7   7.2         4   1.8e+04     116     116 ..     444     444 ..     376     505 .. 0.55
   3 ?   -1.2   1.5      0.53   2.4e+03       3      26 ..     792     817 ..     765     851 .. 0.58

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00013
     DUF4199  31 pllgllallllllvpflvylalkkyrkknlgGfisfgqafgfgflislvagllsavfqyiyfnfidpdfienyiaeilekleeakeesae 120
                 +  +ll+++++     +++ + ++ r++++g+ + + q  +  +l +  a++l +v++++y+++i   ++ +y++   ++lee+ ++ + 
  KOO21339.1 248 TSAALLFVFSTS--CHFLLAQGRAIRDTEEGEILGINQENLNIVLGVGGASFLASVTIMVYMRVITYRMVRKYLEREVQELEEKLYQVKN 335
                 223333344444..46688888899***966699****999999999*********************9999999888888866554333 PP

  == domain 2  score: -5.7 bits;  conditional E-value: 4
     DUF4199 116 e 116
                 +
  KOO21339.1 444 A 444
                 1 PP

  == domain 3  score: -1.2 bits;  conditional E-value: 0.53
     DUF4199   3 Glilglvwilifll.ilyllglh.qi 26 
                 ++ l l+ +  f+l +++++     +
  KOO21339.1 792 AISLSLANMFNFVLlVVFAMRIPvPD 817
                 44455555555666566666665333 PP

>> DUF4064  Protein of unknown function (DUF4064)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.8       1.3   5.6e+03      64     102 ..     217     255 ..     189     256 .. 0.72
   2 ?   -4.3   3.3         4   1.8e+04      44      62 ..     269     287 ..     222     312 .. 0.47
   3 ?   -2.1   0.1       1.1   4.8e+03       6      30 ..     288     310 ..     283     330 .. 0.65
   4 ?    0.5   2.2      0.16   7.2e+02      13      74 ..     445     490 ..     402     506 .. 0.60
   5 ?   -2.0   0.0      0.97   4.4e+03      12      41 ..     627     656 ..     625     682 .. 0.74
   6 ?    8.2   0.0   0.00067         3       8      80 ..     819     910 ..     817     914 .. 0.90

  Alignments for each domain:
  == domain 1  score: -2.3 bits;  conditional E-value: 1.3
     DUF4064  64 lgvialiaivlgivgalllkknkkvsGilfiiaailslf 102
                 l+  +++ ++++ v +lllk+ ++++ + +i +a+l+++
  KOO21339.1 217 LLCTVILPFLISGVTVLLLKSLGEIARLALITSAALLFV 255
                 566677888888888888888888888877777777765 PP

  == domain 2  score: -4.3 bits;  conditional E-value: 4
     DUF4064  44 alsgedasavleflstlli 62 
                 a+ +++  ++l++ ++ l 
  KOO21339.1 269 AIRDTEEGEILGINQENLN 287
                 3344444444433333332 PP

  == domain 3  score: -2.1 bits;  conditional E-value: 1.1
     DUF4064   6 iiLglIGgilgillglllllflfll 30 
                 i+Lg+ G+  ++l+++++++++ ++
  KOO21339.1 288 IVLGVGGA--SFLASVTIMVYMRVI 310
                 66776666..556666666665554 PP

  == domain 4  score: 0.5 bits;  conditional E-value: 0.16
     DUF4064  13 gilgillglllllflfllssgefsqelteeqalsgedasavleflstllivlgvialiaivl 74 
                 gi+  ++gl+ll++                 a++++  ++v++++s+ l ++ +++l+  v+
  KOO21339.1 445 GICTSFAGLMLLYM----------------LATMTTTGQEVVDYVSQALRATYIGFLLVVVI 490
                 23333333333333................33444445555555555544333332222222 PP

  == domain 5  score: -2.0 bits;  conditional E-value: 0.97
     DUF4064  12 Ggilgillglllllflfllssgefsqelte 41 
                 G++l ++++ l++ ++f + ++  s+ ++ 
  KOO21339.1 627 GAVLTLIMFTLGVPYMFYQLTNRHSKMYES 656
                 778888888888888888888777776654 PP

  == domain 6  score: 8.2 bits;  conditional E-value: 0.00067
     DUF4064   8 LglIGgilgillglllllflfllssgefsqeltee...................qalsgedasavleflstllivlgvialiaivlgivgal 80 
                 +g+I  ++++++ +l l++   l++ + ++ ++                     ++++ + ++ +l f+s+ ++  ++ +++++ l+++g++
  KOO21339.1 819 MGWILLVVNVVFPILSLFIGYCLNDRKARNLQSHLqdvpgrkeylgedkvlaerKSVERHINDFTLRFISKWTWGVLISCILCGELIFIGTF 910
                 67888888899999999998888888877766666899***************************************************998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1067 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1193  (0.0665402); expected 358.6 (0.02)
Passed bias filter:                      728  (0.0406046); expected 358.6 (0.02)
Passed Vit filter:                        70  (0.00390429); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.80u 0.28s 00:00:01.08 Elapsed: 00:00:00.45
# Mc/sec: 7179.83
//
Query:       KOO21340.1  [L=340]
Description: pepsinogen group i (pepsinogen a) [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.9e-57  194.1   0.0    5.1e-43  147.7   0.0    2.0  2  Asp       Eukaryotic aspartyl protease
    1.7e-09   38.2   0.1    2.4e-08   34.4   0.1    2.1  1  TAXi_N    Xylanase inhibitor N-terminal


Domain annotation for each model (and alignments):
>> Asp  Eukaryotic aspartyl protease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  147.7   0.0   5.7e-47   5.1e-43       2     171 ..      80     251 ..      79     257 .. 0.96
   2 !   44.7   0.0   1.3e-15   1.1e-11     249     314 ..     262     331 ..     255     332 .. 0.92

  Alignments for each domain:
  == domain 1  score: 147.7 bits;  conditional E-value: 5.7e-47
                 EEEEEEETTTTEEEEEEEETT--SEEEEBTTESTSHCHHTSS-B-GGG-TT-EEEEEEEEEECTTSEEEEEEEEEEEEETTEEEEEEEEEEEEEESS.. CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.. RF
         Asp   2 YfgeisiGtpeqkftvifDTGSsdlWVpsskckkssackshstydpskSstykkngkslsisYGdgsvsGflsqdtvkvggltvknqefgeatkepg.. 98 
                 Yfg+++iGtp+q f+v+fDTGS++lWVp   ck ++ c ++  +++++Sst +++++ l i++G+g+++G +++d v++ gl v+ q+f e+ +e++  
  KOO21340.1  80 YFGTLGIGTPPQLFSVVFDTGSANLWVPGLGCK-TKRCGNRPRFNSTASSTCESSEQGLGIRFGTGEIEGRVMRDMVSFHGLRVPRQAFLEVREERSfp 177
                 ********************************9.89*********************************************************999833 PP

                 HHHTTSSSSEEEE-S-GGGSCGGSCCHHHHHHHTTSSSSSEEEEEE-S.TTSSEEEEEESSEEGGGEEEEEEEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxx RF
         Asp  99 stflaakfdGiLGlgfkeisveeatpvfdnlvsqglikepvfsvylnr.eeeeggeivfGgvDeskykGsltyv 171
                 + f++ +fdG++Gl+++++++++++p+fd ++ q+l++++ f++ +   ++ +g+ +v+Gg+D +++ G + +v
  KOO21340.1 178 EGFEDYPFDGLVGLALPALAADGTSPFFDSVMRQRLLARNQFAFHFGAqSDPRGSALVLGGLDVTRLAGPVRWV 251
                 4589999***************************************997899999**************99998 PP

  == domain 2  score: 44.7 bits;  conditional E-value: 1.3e-15
                 EEEETTEEEEEEGGGGEEEESSSTTSEEEESE....EECCTSSSEEEEHHHHTTEEEEEETTTTEEEEEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
         Asp 249 sftiggakitvpvselvlkeeeseesqCilgl....vseeegdlwiLGdvFlrsayvvfdldnnrvglAe 314
                 +ft++ a++ + +++ +l  +e+++++C +++    v++++g+lwi+Gd+F+r++  vfd+d +r+g+A 
  KOO21340.1 262 TFTFSPADYILHAEDSLLAAGEEDSDECAFAFmaldVPPPRGPLWIFGDIFMRRYAAVFDRDGDRIGFAL 331
                 688888899999999999999999********************************************95 PP

>> TAXi_N  Xylanase inhibitor N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.4   0.1   2.6e-12   2.4e-08       1      53 [.      80     132 ..      80     238 .. 0.85

  Alignments for each domain:
  == domain 1  score: 34.4 bits;  conditional E-value: 2.6e-12
      TAXi_N   1 YlvsisiGtppqplklvvDtGsdltWvqCkpckacssqkkpvfdpsksstyka 53 
                 Y+ +++iGtppq +++v+DtGs  +Wv    ck++   ++p f+ ++sst++ 
  KOO21340.1  80 YFGTLGIGTPPQLFSVVFDTGSANLWVPGLGCKTKRCGNRPRFNSTASSTCES 132
                 999**************************888888888888888888888754 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (340 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       208  (0.0116013); expected 358.6 (0.02)
Passed bias filter:                      191  (0.0106531); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.46u 0.25s 00:00:00.71 Elapsed: 00:00:00.41
# Mc/sec: 2488.06
//
Query:       KOO21341.1  [L=1678]
Description: hypothetical protein Ctob_002030 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.7e-11   43.6   0.0     0.0002   21.2   0.0    2.5  2  RasGAP           GTPase-activator protein for Ras-like GTPase
    1.1e-06   28.4   0.0    6.5e-06   25.9   0.0    2.5  2  UBA              UBA/TS-N domain
    4.5e-06   26.9   0.0    1.4e-05   25.4   0.0    1.8  1  PDZ              PDZ domain
  ------ inclusion threshold ------
          1    9.8   8.4        2.6    8.5   8.4    1.6  1  PBP1_TM          Transmembrane domain of transglycosylase PBP
        1.8    7.8   4.5          3    7.1   4.5    1.2  1  NOA36            NOA36 protein


Domain annotation for each model (and alignments):
>> RasGAP  GTPase-activator protein for Ras-like GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.2   0.0   5.5e-08    0.0002      37     145 ..     190     294 ..     179     299 .. 0.87
   2 !   19.5   0.0   1.8e-07   0.00064     107     206 ..     981    1079 ..     946    1081 .. 0.79

  Alignments for each domain:
  == domain 1  score: 21.2 bits;  conditional E-value: 5.5e-08
      RasGAP  37 pegqeyLkkilkpllqkil..ekedlnlelDPrkiyeelkkkkesktgkksessgkksekeaselekvsqmleknldkLkelvneildsIfksleqlPv 133
                 p g  +L+++l+  l++i+  +k  l+l +DP   y++l+++         e ++++s+ +  e+ kv + l ++ ++L   ++++l+++++s+   P 
  KOO21341.1 190 PGGGAWLQAALGAQLARIIeeSKYGLKLLIDPVDAYQSLSAEDRA------EVNREVSATSVGEHMKVMEVLSARSTALNAKCEALLQALLASTPAAPR 282
                 66778999**********94334458999**********998776......588999999999************************************ PP

      RasGAP 134 giRiickqirek 145
                 g+R++c+ +++ 
  KOO21341.1 283 GLRLLCQLLQRR 294
                 *******99876 PP

  == domain 2  score: 19.5 bits;  conditional E-value: 1.8e-07
      RasGAP  107 e...knldkLkelvneildsIfksleqlPvgiRiickqirekvkekfpdaseeeilnligsflflrfliPaivnPklfglv....dkqiseeqrrnL 196 
                  e   ++  +L   ++ +l+++++s  + P g+R++++ +   +              ++ ++l++ f++Pa+++P+l+gl     + ++s + r+nL
  KOO21341.1  981 EvlsARSAALCAECEVLLHAVLSSASSAPRGLRMLARTLSFALPSGA--------TSALVALLYNTFVLPALTTPELYGLRldggEGLVSMRVRQNL 1069
                  1444788888888999999999999999***9999998866555444........6789***********************99999********** PP

      RasGAP  197 tliaKllqnl 206 
                  +++a  l +l
  KOO21341.1 1070 SALATALEQL 1079
                  ****999887 PP

>> UBA  UBA/TS-N domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.0      0.99   3.5e+03      12      19 ..     864     872 ..     864     874 .. 0.78
   2 !   25.9   0.0   1.8e-09   6.5e-06       3      37 .]    1555    1589 ..    1553    1589 .. 0.95

  Alignments for each domain:
  == domain 1  score: -2.0 bits;  conditional E-value: 0.99
                 TTS-HH.HH CS
         UBA  12 MGFdre.ev 19 
                 MGFd++ ++
  KOO21341.1 864 MGFDEQkHA 872
                 ****98665 PP

  == domain 2  score: 25.9 bits;  conditional E-value: 1.8e-09
                  HHHHHHHHHTTS-HHHHHHHHHHTTTSHHHHHHHH CS
         UBA    3 eeaiqrLveMGFdreevveALratgnNeErAveyL 37  
                  e+++ rLveMGF+r ++  ALr +g+++ +A+++L
  KOO21341.1 1555 EKSVIRLVEMGFPRFQASAALRDAGGDPRAALQIL 1589
                  7899***************************9987 PP

>> PDZ  PDZ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.4   0.0   3.8e-09   1.4e-05       8      61 ..    1180    1237 ..    1173    1246 .. 0.89

  Alignments for each domain:
  == domain 1  score: 25.4 bits;  conditional E-value: 3.8e-09
                  TTSESSEEEEEETTSS...SSSSEEEEEECTTSHHHHHT.SSTTEEEEEETTEETTTS CS
         PDZ    8 grgglGfslkggsdqr...gdkgifvsevlpggaaeadg.lkvGDkIlsvNgvdvenv 61  
                  ++g+lG++++  +++    +  + + ++++pggaa+++g l+vGD I   Ng+ + ++
  KOO21341.1 1180 KEGPLGITVENVDSHPnspAHFPPILTHIVPGGAADRSGqLRVGDHIFFFNGQRLYDH 1237
                  6899******988888999888999***************************998666 PP

>> PBP1_TM  Transmembrane domain of transglycosylase PBP1 at N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.5   8.4   0.00071       2.6      32      72 ..     729     768 ..     724     771 .. 0.77

  Alignments for each domain:
  == domain 1  score: 8.5 bits;  conditional E-value: 0.00071
     PBP1_TM  32 dddyddeyddeedDdddddeeeevprkgkkkkpprkkrrwl 72 
                 d+d +de +de +D+d+d++  + pr  kkk+  +kk++ l
  KOO21341.1 729 DED-EDEDEDEDEDEDEDEDGGDTPRLVKKKSVVKKKSSSL 768
                 444.44456777888899999999*****999999998765 PP

>> NOA36  NOA36 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.1   4.5   0.00083         3     275     295 ..     728     748 ..     679     758 .. 0.69

  Alignments for each domain:
  == domain 1  score: 7.1 bits;  conditional E-value: 0.00083
       NOA36 275 edddddddeedddeeeddede 295
                 ed+d+d+de++d++e++ded 
  KOO21341.1 728 EDEDEDEDEDEDEDEDEDEDG 748
                 333333333333333333332 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1678 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       777  (0.0433376); expected 358.6 (0.02)
Passed bias filter:                      568  (0.0316805); expected 358.6 (0.02)
Passed Vit filter:                        84  (0.00468515); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 1.11u 0.31s 00:00:01.42 Elapsed: 00:00:00.49
# Mc/sec: 10237.06
//
Query:       KOO21342.1  [L=312]
Description: bifunctional polynucleotide phosphatase kinase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
      2e-26   92.6   0.0    2.5e-26   92.3   0.0    1.1  1  PNK3P        Polynucleotide kinase 3 phosphatase
    1.1e-06   28.5   3.5    2.2e-06   27.5   3.5    1.5  1  zf-CCHH      PBZ domain
  ------ inclusion threshold ------
       0.07   13.3   0.0       0.13   12.4   0.0    1.4  1  Hydrolase_6  Haloacid dehalogenase-like hydrolase
      0.091   13.1   0.0       0.16   12.3   0.0    1.4  1  DUF3239      Protein of unknown function (DUF3239)


Domain annotation for each model (and alignments):
>> PNK3P  Polynucleotide kinase 3 phosphatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   92.3   0.0   5.6e-30   2.5e-26       1     162 []     149     304 ..     149     304 .. 0.89

  Alignments for each domain:
  == domain 1  score: 92.3 bits;  conditional E-value: 5.6e-30
       PNK3P   1 kiaaFDlDstliktksgkefakdaddwkllsesvlekLkklkeegykivifsNqggvvek...ktkkslekfkekieallkeldvpllvyaatkkdkyR 96 
                 k+ aFD+D++l +t  g +   d++ w++  ++v++ L++l+  g ++vi++N++    k   + + ++ k   ++e ++++++vpllv++a  kd +R
  KOO21342.1 149 KVGAFDFDGCLARTPLGGN---DPNAWSMQFTHVPAVLASLAASGHTLVIVTNESMDRFKkpeAIAAAIRKKCGRLEGFARAVGVPLLVLCASAKDDFR 244
                 6789***********9877...788****************************98766553334444555566677888999***************** PP

       PNK3P  97 KPetGmweelkkdleekleidkeksfyvGDaagrklkkkkkkdfsdsDkkfAenvgikFktPeefF 162
                 KP +G w+++++++  ++++dk  sf+vGDaagr        d+ d D++fA+ vgi F+  + fF
  KOO21342.1 245 KPGAGCWDYVARHAYPDTPVDKAGSFFVGDAAGR------LGDHGDGDREFARAVGIAFFDEKAFF 304
                 **********************************......9******************9877777 PP

>> zf-CCHH  PBZ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.5   3.5   4.9e-10   2.2e-06       2      24 ..      15      37 ..      14      39 .. 0.96

  Alignments for each domain:
  == domain 1  score: 27.5 bits;  conditional E-value: 4.9e-10
     zf-CCHH  2 PpCkYGkkCYRkNpqHfqefsHP 24
                PpCkYG+ CY++   H + f HP
  KOO21342.1 15 PPCKYGNACYQQSRSHWEAFDHP 37
                9*********************9 PP

>> Hydrolase_6  Haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0     3e-05      0.13       3      42 ..     153     202 ..     152     219 .. 0.78

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 3e-05
                  EESTTTSE..........ETTEE-TTHHHHHHHHHHTT-EEEEEE---SS CS
  Hydrolase_6   3 fDidGvLw..........rgdkaipgaaealnalraagkpvvllTNnssk 42 
                  fD dG+L             +  + +++ +l  l a+g ++v++TN+s  
   KOO21342.1 153 FDFDGCLArtplggndpnAWSMQFTHVPAVLASLAASGHTLVIVTNESMD 202
                  9999999955555544433555699*********************9864 PP

>> DUF3239  Protein of unknown function (DUF3239)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   3.6e-05      0.16      16      68 ..     179     233 ..     169     256 .. 0.81

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 3.6e-05
                 EEEEEEEE-SS-EEEEEEEE-BSSTTS---..EEEEEEEES--TT-S-STT-EEE CS
     DUF3239  16 vPavvaevnprdvvllaLvdiakdeaaepe..yalalrtvtalpgverkvGervp 68 
                 vPav a+ ++++ +l+  ++ + d+ ++pe   a + ++  +l+g +r+vG  + 
  KOO21342.1 179 VPAVLASLAASGHTLVIVTNESMDRFKKPEaiAAAIRKKCGRLEGFARAVGVPLL 233
                 9****************************9844555557899*********7654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (312 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       349  (0.0194657); expected 358.6 (0.02)
Passed bias filter:                      257  (0.0143343); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.44u 0.23s 00:00:00.67 Elapsed: 00:00:00.40
# Mc/sec: 2329.47
//
Query:       KOO21343.1  [L=789]
Description: tpr repeat-containing protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.5e-58  191.2  19.0    3.4e-10   39.5   0.0    6.8  6  TPR_10     Tetratricopeptide repeat
    1.2e-48  163.2  14.8    2.1e-17   63.2   1.2    4.4  4  TPR_12     Tetratricopeptide repeat
    1.4e-20   72.1   2.5     0.0019   17.9   0.1    6.2  6  TPR_1      Tetratricopeptide repeat
    3.3e-17   61.1  10.0     0.0081   16.2   0.2    6.4  6  TPR_2      Tetratricopeptide repeat
    7.8e-17   61.6   5.6    3.2e-11   43.2   0.9    3.3  2  TPR_MalT   MalT-like TPR region
      8e-17   60.0   6.8     0.0065   16.6   0.0    5.9  5  TPR_8      Tetratricopeptide repeat
      1e-15   56.5  13.5    0.00054   19.8   0.0    6.1  6  TPR_7      Tetratricopeptide repeat
      7e-14   52.2  18.5     0.0017   18.9   0.7    6.1  6  TPR_16     Tetratricopeptide repeat
    6.2e-09   35.6   7.8       0.38   11.5   0.2    7.8  7  TPR_4      Tetratricopeptide repeat
    1.6e-08   34.0   1.7        0.1   12.3   0.0    5.0  5  TPR_11     TPR repeat
    7.5e-08   32.6  22.8       0.59   11.1   0.1    6.7  5  TPR_14     Tetratricopeptide repeat
    3.6e-05   23.9   3.4         13    6.4   0.0    5.6  5  TPR_17     Tetratricopeptide repeat
    0.00012   22.5  15.9       0.43   11.1   1.8    4.5  4  TPR_19     Tetratricopeptide repeat
    0.00044   20.4  10.9          6    7.2   0.2    6.7  7  Osmo_CC    Osmosensory transporter coiled coil
     0.0033   17.4   0.0         13    5.9   0.0    4.0  4  TPR_3      Tetratricopeptide repeat
     0.0042   17.3   0.3          7    7.0   0.1    3.4  3  ANAPC3     Anaphase-promoting complex, cyclosome, subunit 3
  ------ inclusion threshold ------
      0.065   13.9   7.6         49    4.9   0.2    5.2  4  TPR_6      Tetratricopeptide repeat
       0.53   10.8   5.9         47    4.5   0.2    4.7  4  TetR_C_18  Tetracyclin repressor-like, C-terminal domain
       0.81    9.4   5.6        5.6    6.7   0.2    3.3  3  Lectin_N   Hepatic lectin, N-terminal domain
        3.5    7.9  22.0      0.069   13.4   2.6    4.8  4  TPR_5      Tetratrico peptide repeat


Domain annotation for each model (and alignments):
>> TPR_10  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.1   0.3   1.6e-10   1.4e-07       6      42 .]     534     570 ..     531     570 .. 0.96
   2 !   27.5   0.1   2.2e-09   1.9e-06       1      41 [.     571     611 ..     571     612 .. 0.97
   3 !   30.8   0.1     2e-10   1.8e-07       1      42 []     613     654 ..     613     654 .. 0.98
   4 !   37.7   0.0   1.4e-12   1.2e-09       1      40 [.     655     694 ..     655     696 .. 0.98
   5 !   39.5   0.0   3.8e-13   3.4e-10       1      41 [.     697     737 ..     697     738 .. 0.97
   6 !   33.8   0.4   2.3e-11   2.1e-08       1      40 [.     739     778 ..     739     780 .. 0.92

  Alignments for each domain:
  == domain 1  score: 31.1 bits;  conditional E-value: 1.6e-10
      TPR_10   6 nNLanalrqrgrydeAealleealairrrllGpdHPd 42 
                   La++l+ +g++ e+e ll+eal++rr+++G+ HPd
  KOO21343.1 534 DALARLLQVQGKLIESEPLLREALEARRAAFGDRHPD 570
                 67**********************************9 PP

  == domain 2  score: 27.5 bits;  conditional E-value: 2.2e-09
      TPR_10   1 tAsslnNLanalrqrgrydeAealleealairrrllGpdHP 41 
                 t+ s n+L+ +l++ g++deA  ll+eal+  r++lG+ H+
  KOO21343.1 571 TLESINHLGSLLFDKGKLDEAATLLREALENSRATLGDRHR 611
                 799***********************************995 PP

  == domain 3  score: 30.8 bits;  conditional E-value: 2e-10
      TPR_10   1 tAsslnNLanalrqrgrydeAealleealairrrllGpdHPd 42 
                 t+ s n+L+++l+ rg++ e   l++eal++ r++lG+ HPd
  KOO21343.1 613 TLDSINHLGRLLHVRGKLVETAPLYREALEVSRATLGDRHPD 654
                 899**************************************9 PP

  == domain 4  score: 37.7 bits;  conditional E-value: 1.4e-12
      TPR_10   1 tAsslnNLanalrqrgrydeAealleealairrrllGpdH 40 
                 t++s nNL+++  ++g++deA  l++eal++ r++lG+ H
  KOO21343.1 655 TLTSINNLGRLFKDQGKLDEAAPLFREALEASRATLGDRH 694
                 89************************************99 PP

  == domain 5  score: 39.5 bits;  conditional E-value: 3.8e-13
      TPR_10   1 tAsslnNLanalrqrgrydeAealleealairrrllGpdHP 41 
                 t+ s nNL+ +l ++g++d+A  ll+ea+++rr++lG+ HP
  KOO21343.1 697 TLLSINNLGLLLKDQGKLDKAAPLLKEAVEARRATLGDQHP 737
                 7889************************************9 PP

  == domain 6  score: 33.8 bits;  conditional E-value: 2.3e-11
      TPR_10   1 tAsslnNLanalrqrgrydeAealleealairrrllGpdH 40 
                 t+ s nNL+ +l+++g++deA  ll+eal++rr++l   H
  KOO21343.1 739 TLFSINNLGLLLQAQGKLDEAAPLLQEALEARRATLPYQH 778
                 67799*****************************997666 PP

>> TPR_12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.0       3.2   2.8e+03      27      55 ..     274     298 ..     272     301 .. 0.71
   2 !   52.3   1.6     6e-17   5.3e-14       6      76 ..     533     603 ..     528     604 .. 0.94
   3 !   54.1   0.0   1.6e-17   1.4e-14       4      76 ..     615     687 ..     612     688 .. 0.95
   4 !   63.2   1.2   2.3e-20   2.1e-17       4      76 ..     699     771 ..     694     772 .. 0.95

  Alignments for each domain:
  == domain 1  score: -1.3 bits;  conditional E-value: 3.2
      TPR_12  27 ekaleiarrllGpdhpltattlrnLgrly 55 
                  ++l+++ +  G+d    a++l++L++++
  KOO21343.1 274 IESLALMAEKRGED----ASALIGLATTF 298
                 57788887776654....78888888876 PP

  == domain 2  score: 52.3 bits;  conditional E-value: 6e-17
      TPR_12   6 lnnlaavlrrlgrydeAlellekaleiarrllGpdhpltattlrnLgrlyralgryeeAlelleealaiae 76 
                 +  la +l+ +g++ e++ ll++ale++r+++G+ hp+t+++ + Lg l++  g+++eA  ll+eal+  +
  KOO21343.1 533 QDALARLLQVQGKLIESEPLLREALEARRAAFGDRHPDTLESINHLGSLLFDKGKLDEAATLLREALENSR 603
                 5479***************************************************************9866 PP

  == domain 3  score: 54.1 bits;  conditional E-value: 1.6e-17
      TPR_12   4 talnnlaavlrrlgrydeAlellekaleiarrllGpdhpltattlrnLgrlyralgryeeAlelleealaiae 76 
                  + n+l+ +l+ +g++ e   l+++ale+ r++lG+ hp+t+t+ +nLgrl+  +g+++eA  l++eal++ +
  KOO21343.1 615 DSINHLGRLLHVRGKLVETAPLYREALEVSRATLGDRHPDTLTSINNLGRLFKDQGKLDEAAPLFREALEASR 687
                 56679*****************************************************************876 PP

  == domain 4  score: 63.2 bits;  conditional E-value: 2.3e-20
      TPR_12   4 talnnlaavlrrlgrydeAlellekaleiarrllGpdhpltattlrnLgrlyralgryeeAlelleealaiae 76 
                  + nnl+++l  +g++d+A  ll++a+e++r++lG++hp+t+ + +nLg l++a+g+++eA  ll+eal++++
  KOO21343.1 699 LSINNLGLLLKDQGKLDKAAPLLKEAVEARRATLGDQHPQTLFSINNLGLLLQAQGKLDEAAPLLQEALEARR 771
                 45569*****************************************************************998 PP

>> TPR_1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.0       2.2     2e+03       7      29 ..     536     558 ..     535     560 .. 0.88
   2 !   11.9   0.0   0.00017      0.15       5      29 ..     576     600 ..     573     603 .. 0.93
   3 ?    4.1   0.0      0.05        45       5      30 ..     618     643 ..     615     645 .. 0.92
   4 !   17.0   0.0   4.2e-06    0.0038       5      29 ..     660     684 ..     658     686 .. 0.96
   5 !   14.5   0.0   2.6e-05     0.023       5      29 ..     702     726 ..     700     729 .. 0.94
   6 !   17.9   0.1   2.2e-06    0.0019       5      29 ..     744     768 ..     742     771 .. 0.95

  Alignments for each domain:
  == domain 1  score: -1.1 bits;  conditional E-value: 2.2
                 HHHHHHHTT-HHHHHHHHHHHHH CS
       TPR_1   7 lGnayfklgkydeAleyyekALe 29 
                 l+ +++ +gk+ e +   ++ALe
  KOO21343.1 536 LARLLQVQGKLIESEPLLREALE 558
                 67788999***999999****98 PP

  == domain 2  score: 11.9 bits;  conditional E-value: 0.00017
                 HHHHHHHHHTT-HHHHHHHHHHHHH CS
       TPR_1   5 ynlGnayfklgkydeAleyyekALe 29 
                 + lG ++f +gk+deA    ++ALe
  KOO21343.1 576 NHLGSLLFDKGKLDEAATLLREALE 600
                 78**********************9 PP

  == domain 3  score: 4.1 bits;  conditional E-value: 0.05
                 HHHHHHHHHTT-HHHHHHHHHHHHHH CS
       TPR_1   5 ynlGnayfklgkydeAleyyekALel 30 
                 + lG +++  gk+ e    y++ALe+
  KOO21343.1 618 NHLGRLLHVRGKLVETAPLYREALEV 643
                 789*********************97 PP

  == domain 4  score: 17.0 bits;  conditional E-value: 4.2e-06
                 HHHHHHHHHTT-HHHHHHHHHHHHH CS
       TPR_1   5 ynlGnayfklgkydeAleyyekALe 29 
                 +nlG ++  +gk+deA   +++ALe
  KOO21343.1 660 NNLGRLFKDQGKLDEAAPLFREALE 684
                 8***********************8 PP

  == domain 5  score: 14.5 bits;  conditional E-value: 2.6e-05
                 HHHHHHHHHTT-HHHHHHHHHHHHH CS
       TPR_1   5 ynlGnayfklgkydeAleyyekALe 29 
                 +nlG+++  +gk+d+A    ++A+e
  KOO21343.1 702 NNLGLLLKDQGKLDKAAPLLKEAVE 726
                 8**********************98 PP

  == domain 6  score: 17.9 bits;  conditional E-value: 2.2e-06
                 HHHHHHHHHTT-HHHHHHHHHHHHH CS
       TPR_1   5 ynlGnayfklgkydeAleyyekALe 29 
                 +nlG++++ +gk+deA    ++ALe
  KOO21343.1 744 NNLGLLLQAQGKLDEAAPLLQEALE 768
                 8***********************9 PP

>> TPR_2  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.9   0.2     0.076        68       5      29 ..     534     558 ..     530     562 .. 0.90
   2 !   13.6   0.0   6.3e-05     0.056       5      29 ..     576     600 ..     573     603 .. 0.92
   3 ?   -0.7   0.0       2.3   2.1e+03       6      29 ..     619     642 ..     616     645 .. 0.82
   4 !   15.5   0.1   1.5e-05     0.013       5      30 ..     660     685 ..     658     688 .. 0.93
   5 !   11.9   0.0   0.00022       0.2       5      29 ..     702     726 ..     699     729 .. 0.93
   6 !   16.2   0.2     9e-06    0.0081       5      29 ..     744     768 ..     741     771 .. 0.94

  Alignments for each domain:
  == domain 1  score: 3.9 bits;  conditional E-value: 0.076
       TPR_2   5 ynlGlayyklgdyeeAleafekAle 29 
                  +l++++  +g++ e + ++++Ale
  KOO21343.1 534 DALARLLQVQGKLIESEPLLREALE 558
                 689*********************8 PP

  == domain 2  score: 13.6 bits;  conditional E-value: 6.3e-05
       TPR_2   5 ynlGlayyklgdyeeAleafekAle 29 
                 + lG +++ +g+++eA+ ++++Ale
  KOO21343.1 576 NHLGSLLFDKGKLDEAATLLREALE 600
                 689*********************8 PP

  == domain 3  score: -0.7 bits;  conditional E-value: 2.3
       TPR_2   6 nlGlayyklgdyeeAleafekAle 29 
                  lG+++  +g++ e + ++++Ale
  KOO21343.1 619 HLGRLLHVRGKLVETAPLYREALE 642
                 688888888888888889999998 PP

  == domain 4  score: 15.5 bits;  conditional E-value: 1.5e-05
       TPR_2   5 ynlGlayyklgdyeeAleafekAlel 30 
                 +nlG++   +g+++eA+ +f++Ale 
  KOO21343.1 660 NNLGRLFKDQGKLDEAAPLFREALEA 685
                 79**********************95 PP

  == domain 5  score: 11.9 bits;  conditional E-value: 0.00022
       TPR_2   5 ynlGlayyklgdyeeAleafekAle 29 
                 +nlGl++  +g++++A+ ++++A+e
  KOO21343.1 702 NNLGLLLKDQGKLDKAAPLLKEAVE 726
                 79*********************98 PP

  == domain 6  score: 16.2 bits;  conditional E-value: 9e-06
       TPR_2   5 ynlGlayyklgdyeeAleafekAle 29 
                 +nlGl++ ++g+++eA+ ++++Ale
  KOO21343.1 744 NNLGLLLQAQGKLDEAAPLLQEALE 768
                 79**********************8 PP

>> TPR_MalT  MalT-like TPR region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.9   0.6   2.7e-08   2.4e-05      27     153 ..     518     645 ..     498     647 .. 0.69
   2 !   43.2   0.9   3.5e-14   3.2e-11      46     190 ..     620     769 ..     607     781 .. 0.87

  Alignments for each domain:
  == domain 1  score: 23.9 bits;  conditional E-value: 2.7e-08
    TPR_MalT  27 ALallpeddllariaatavlGeasllqGdleaAlqalqeaekl..arqadslhvallallqqaeilvaqGrLheAletyeqalqlateqglqqlplvgf 123
                 AL ++p ++  ++ +   +l++  ++qG+l +++  l+ea ++  a   d+ + +l ++ +++ +l+ +G+L+eA+ + ++al+  + + + + ++   
  KOO21343.1 518 ALMRMPGEKRATSKLQ-DALARLLQVQGKLIESEPLLREALEArrAAFGDRHPDTLESINHLGSLLFDKGKLDEAATLLREALENSRATLGDRHRTTLD 615
                 5555555554444444.3446677788888888888887765422444555566888888888888888888888888888888888888888888888 PP

    TPR_MalT 124 llvlladllyEwndLeeAeqhlqeGielle 153
                     l++ll+ +++L e +   +e++e+++
  KOO21343.1 616 SINHLGRLLHVRGKLVETAPLYREALEVSR 645
                 878888888888877777666666666654 PP

  == domain 2  score: 43.2 bits;  conditional E-value: 3.5e-14
    TPR_MalT  46 lGeasllqGdleaAlqalqeaekl..arqadslhvallallqqaeilvaqGrLheAletyeqalqlateqglqqlplvgfllvlladllyEwndLeeAe 142
                 lG+  +++G+l +    ++ea ++  a   d+ + +l+++  ++ +   qG+L+eA+ ++++al+  + + + +  +  +    l+ ll ++++L++A+
  KOO21343.1 620 LGRLLHVRGKLVETAPLYREALEVsrATLGDRHPDTLTSINNLGRLFKDQGKLDEAAPLFREALEASRATLGDRHATTLLSINNLGLLLKDQGKLDKAA 718
                 79999**************9988722334556666**************************************************************** PP

    TPR_MalT 143 qhlqeGielleql...epeaaldayvllarialaqGdleeAetllekaeel 190
                   l+e++e  +     +  ++l +   l  + +aqG+l+eA+ ll++a e 
  KOO21343.1 719 PLLKEAVEARRATlgdQHPQTLFSINNLGLLLQAQGKLDEAAPLLQEALEA 769
                 ********999954544456667888899999***************9875 PP

>> TPR_8  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.3   0.1       1.2   1.1e+03       7      32 ..     536     561 ..     531     562 .. 0.86
   2 !   15.6   0.0   1.5e-05     0.013       2      32 ..     573     603 ..     572     605 .. 0.90
   3 !   16.6   0.0   7.3e-06    0.0065       3      33 ..     658     688 ..     656     689 .. 0.91
   4 !   13.4   0.0   7.6e-05     0.068       5      33 ..     702     730 ..     700     731 .. 0.92
   5 !   12.3   0.1   0.00017      0.15       5      33 ..     744     772 ..     742     773 .. 0.92

  Alignments for each domain:
  == domain 1  score: 0.3 bits;  conditional E-value: 1.2
                 HHHHHHHTT-HHHHHHHHHHHHHHHH CS
       TPR_8   7 lgsiylklgdyeeAkeyyekaleldp 32 
                 l+++++ +g++ e++  +++ale+++
  KOO21343.1 536 LARLLQVQGKLIESEPLLREALEARR 561
                 788888899999**********9876 PP

  == domain 2  score: 15.6 bits;  conditional E-value: 1.5e-05
                 CHHHHHHHHHHHTT-HHHHHHHHHHHHHHHH CS
       TPR_8   2 eayynlgsiylklgdyeeAkeyyekaleldp 32 
                 e+ ++lgs+++++g+++eA   +++ale ++
  KOO21343.1 573 ESINHLGSLLFDKGKLDEAATLLREALENSR 603
                 67799**********************9766 PP

  == domain 3  score: 16.6 bits;  conditional E-value: 7.3e-06
                 HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH CS
       TPR_8   3 ayynlgsiylklgdyeeAkeyyekaleldpd 33 
                 + +nlg++ +++g+++eA   +++ale++++
  KOO21343.1 658 SINNLGRLFKDQGKLDEAAPLFREALEASRA 688
                 568************************9875 PP

  == domain 4  score: 13.4 bits;  conditional E-value: 7.6e-05
                 HHHHHHHHHTT-HHHHHHHHHHHHHHHHH CS
       TPR_8   5 ynlgsiylklgdyeeAkeyyekaleldpd 33 
                 +nlg++++++g++++A   +++a+e++++
  KOO21343.1 702 NNLGLLLKDQGKLDKAAPLLKEAVEARRA 730
                 79***********************9875 PP

  == domain 5  score: 12.3 bits;  conditional E-value: 0.00017
                 HHHHHHHHHTT-HHHHHHHHHHHHHHHHH CS
       TPR_8   5 ynlgsiylklgdyeeAkeyyekaleldpd 33 
                 +nlg++++ +g+++eA   +++ale++++
  KOO21343.1 744 NNLGLLLQAQGKLDEAAPLLQEALEARRA 772
                 79***********************9875 PP

>> TPR_7  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.2   0.3       1.1   9.8e+02       4      32 ..     535     563 ..     532     567 .. 0.84
   2 !   13.1   0.1   8.3e-05     0.074       1      31 [.     574     602 ..     574     609 .. 0.85
   3 ?   -1.0   0.0       2.6   2.4e+03       3      30 ..     618     645 ..     616     651 .. 0.66
   4 !   19.8   0.0     6e-07   0.00054       1      30 [.     658     687 ..     658     693 .. 0.83
   5 !   12.0   0.0   0.00019      0.17       1      28 [.     700     727 ..     700     734 .. 0.85
   6 !   15.2   0.3   1.8e-05     0.016       1      30 [.     742     771 ..     742     774 .. 0.90

  Alignments for each domain:
  == domain 1  score: 0.2 bits;  conditional E-value: 1.1
       TPR_7   4 nLarlysrlGdyeeAielyeqsLaltkdp 32 
                 +Larl + +G+  e + l++++L+ +++ 
  KOO21343.1 535 ALARLLQVQGKLIESEPLLREALEARRAA 563
                 899999999************99887765 PP

  == domain 2  score: 13.1 bits;  conditional E-value: 8.3e-05
       TPR_7   1 aLlnLarlysrlGdyeeAielyeqsLaltkd 31 
                 +++ L++l ++ G+ +eA++l+++  al+++
  KOO21343.1 574 SINHLGSLLFDKGKLDEAATLLRE--ALENS 602
                 5799********************..55544 PP

  == domain 3  score: -1.0 bits;  conditional E-value: 2.6
       TPR_7   3 lnLarlysrlGdyeeAielyeqsLaltk 30 
                 + L+rl + +G+  e + ly+++L++ +
  KOO21343.1 618 NHLGRLLHVRGKLVETAPLYREALEVSR 645
                 6677775555777777889999776555 PP

  == domain 4  score: 19.8 bits;  conditional E-value: 6e-07
       TPR_7   1 aLlnLarlysrlGdyeeAielyeqsLaltk 30 
                 +++nL+rl+ ++G+ +eA+ l++++L+  +
  KOO21343.1 658 SINNLGRLFKDQGKLDEAAPLFREALEASR 687
                 689*********************884433 PP

  == domain 5  score: 12.0 bits;  conditional E-value: 0.00019
       TPR_7   1 aLlnLarlysrlGdyeeAielyeqsLal 28 
                 +++nL+ l  ++G+ ++A+ l++++ + 
  KOO21343.1 700 SINNLGLLLKDQGKLDKAAPLLKEAVEA 727
                 689*********************5544 PP

  == domain 6  score: 15.2 bits;  conditional E-value: 1.8e-05
       TPR_7   1 aLlnLarlysrlGdyeeAielyeqsLaltk 30 
                 +++nL+ l +++G+ +eA+ l++++L+ ++
  KOO21343.1 742 SINNLGLLLQAQGKLDEAAPLLQEALEARR 771
                 689*********************887665 PP

>> TPR_16  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.9   0.7   1.9e-06    0.0017       2      64 ..     535     602 ..     535     604 .. 0.84
   2 ?    1.3   0.1      0.63   5.6e+02      39      62 ..     619     642 ..     615     647 .. 0.88
   3 !   17.6   0.3   5.2e-06    0.0047      13      64 ..     637     686 ..     635     689 .. 0.89
   4 !   14.5   0.2   4.8e-05     0.043       2      28 ..     661     687 ..     660     699 .. 0.81
   5 !    9.6   0.2    0.0016       1.4       2      27 ..     703     728 ..     702     734 .. 0.84
   6 !   13.8   0.8     8e-05     0.072       2      27 ..     745     770 ..     744     777 .. 0.91

  Alignments for each domain:
  == domain 1  score: 18.9 bits;  conditional E-value: 1.9e-06
      TPR_16   2 alaraalragdyddAaaaleaalkrdp.....ssPdaaeAllllgdaalrqgrlaeAaalyraalraa 64 
                 alar++  +g+  + +++l++al++++     ++Pd+ e+ ++lg +++ +g l+eAa l+r+al+++
  KOO21343.1 535 ALARLLQVQGKLIESEPLLREALEARRaafgdRHPDTLESINHLGSLLFDKGKLDEAATLLREALENS 602
                 688899999999999999988888874333336788****************************9875 PP

  == domain 2  score: 1.3 bits;  conditional E-value: 0.63
      TPR_16  39 llgdaalrqgrlaeAaalyraalr 62 
                 +lg+++ ++g l e a lyr+al+
  KOO21343.1 619 HLGRLLHVRGKLVETAPLYREALE 642
                 799***********9*****9985 PP

  == domain 3  score: 17.6 bits;  conditional E-value: 5.2e-06
      TPR_16  13 yddAaaaleaalkrdpssPdaaeAllllgdaalrqgrlaeAaalyraalraa 64 
                 y++A+++ +a+l ++  +Pd+  + ++lg+++  qg l+eAa l+r+al+a+
  KOO21343.1 637 YREALEVSRATLGDR--HPDTLTSINNLGRLFKDQGKLDEAAPLFREALEAS 686
                 889999999999999..89999999999999999999999999999999775 PP

  == domain 4  score: 14.5 bits;  conditional E-value: 4.8e-05
      TPR_16   2 alaraalragdyddAaaaleaalkrdp 28 
                 +l+r++ ++g+ d+Aa+++++al++ +
  KOO21343.1 661 NLGRLFKDQGKLDEAAPLFREALEASR 687
                 689999999999999999999999875 PP

  == domain 5  score: 9.6 bits;  conditional E-value: 0.0016
      TPR_16   2 alaraalragdyddAaaaleaalkrd 27 
                 +l++++ ++g+ d+Aa++l++a++++
  KOO21343.1 703 NLGLLLKDQGKLDKAAPLLKEAVEAR 728
                 58889999999999999999999887 PP

  == domain 6  score: 13.8 bits;  conditional E-value: 8e-05
      TPR_16   2 alaraalragdyddAaaaleaalkrd 27 
                 +l++++ ++g+ d+Aa++l++al+++
  KOO21343.1 745 NLGLLLQAQGKLDEAAPLLQEALEAR 770
                 6899*******************998 PP

>> TPR_4  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.0       4.7   4.2e+03      12      22 ..     343     353 ..     333     355 .. 0.83
   2 ?    5.4   0.2      0.04        36       6      26 .]     535     555 ..     532     555 .. 0.93
   3 ?    5.1   0.0     0.051        46       7      26 .]     578     597 ..     577     597 .. 0.86
   4 ?    0.3   0.0       1.8   1.6e+03       7      19 ..     620     632 ..     619     639 .. 0.83
   5 ?    5.6   0.0     0.034        31       6      26 .]     661     681 ..     660     681 .. 0.91
   6 ?    3.4   0.0      0.17   1.5e+02       6      24 ..     703     721 ..     702     723 .. 0.91
   7 !   11.5   0.2   0.00042      0.38       6      26 .]     745     765 ..     744     765 .. 0.93

  Alignments for each domain:
  == domain 1  score: -1.0 bits;  conditional E-value: 4.7
       TPR_4  12 lalGdldeAra 22 
                 l++G+++ A++
  KOO21343.1 343 LLAGEFAGAED 353
                 689******97 PP

  == domain 2  score: 5.4 bits;  conditional E-value: 0.04
       TPR_4   6 aLArallalGdldeAraller 26 
                 aLAr+l+ +G l e + ll++
  KOO21343.1 535 ALARLLQVQGKLIESEPLLRE 555
                 7*****************997 PP

  == domain 3  score: 5.1 bits;  conditional E-value: 0.051
       TPR_4   7 LArallalGdldeAraller 26 
                 L+ +l++ G ldeA++ll++
  KOO21343.1 578 LGSLLFDKGKLDEAATLLRE 597
                 66678888**********97 PP

  == domain 4  score: 0.3 bits;  conditional E-value: 1.8
       TPR_4   7 LArallalGdlde 19 
                 L+r+l+ +G l e
  KOO21343.1 620 LGRLLHVRGKLVE 632
                 99*******8876 PP

  == domain 5  score: 5.6 bits;  conditional E-value: 0.034
       TPR_4   6 aLArallalGdldeAraller 26 
                 +L+r+  ++G ldeA+ l+++
  KOO21343.1 661 NLGRLFKDQGKLDEAAPLFRE 681
                 7999999**********9996 PP

  == domain 6  score: 3.4 bits;  conditional E-value: 0.17
       TPR_4   6 aLArallalGdldeArall 24 
                 +L+ +l ++G ld A+ ll
  KOO21343.1 703 NLGLLLKDQGKLDKAAPLL 721
                 799************9998 PP

  == domain 7  score: 11.5 bits;  conditional E-value: 0.00042
       TPR_4   6 aLArallalGdldeAraller 26 
                 +L+ +l+a+G ldeA+ ll++
  KOO21343.1 745 NLGLLLQAQGKLDEAAPLLQE 765
                 79***************9986 PP

>> TPR_11  TPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.3   0.0   0.00012       0.1       1      22 [.     579     600 ..     579     603 .. 0.94
   2 ?   -2.4   0.0       4.4   3.9e+03       3      23 ..     623     643 ..     621     645 .. 0.69
   3 !    7.2   0.0    0.0044         4       1      22 [.     663     684 ..     663     688 .. 0.92
   4 ?    4.5   0.0     0.032        28       1      22 [.     705     726 ..     705     729 .. 0.90
   5 ?    4.9   0.2     0.023        21       3      22 ..     749     768 ..     747     772 .. 0.86

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 0.00012
      TPR_11   1 GdayyeqGkyeeAieaYkkAlk 22 
                 G +++++Gk++eA + +++Al+
  KOO21343.1 579 GSLLFDKGKLDEAATLLREALE 600
                 7899****************97 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 4.4
      TPR_11   3 ayyeqGkyeeAieaYkkAlkl 23 
                 +++ +Gk+ e    Y++Al+ 
  KOO21343.1 623 LLHVRGKLVETAPLYREALEV 643
                 556667776666779999986 PP

  == domain 3  score: 7.2 bits;  conditional E-value: 0.0044
      TPR_11   1 GdayyeqGkyeeAieaYkkAlk 22 
                 G+++ +qGk++eA   +++Al+
  KOO21343.1 663 GRLFKDQGKLDEAAPLFREALE 684
                 8999***********9999997 PP

  == domain 4  score: 4.5 bits;  conditional E-value: 0.032
      TPR_11   1 GdayyeqGkyeeAieaYkkAlk 22 
                 G ++ +qGk+++A   +k+A++
  KOO21343.1 705 GLLLKDQGKLDKAAPLLKEAVE 726
                 67889*************9987 PP

  == domain 5  score: 4.9 bits;  conditional E-value: 0.023
      TPR_11   3 ayyeqGkyeeAieaYkkAlk 22 
                 ++ +qGk++eA   +++Al+
  KOO21343.1 749 LLQAQGKLDEAAPLLQEALE 768
                 5668**************98 PP

>> TPR_14  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.0   1.1     0.028        25       3      30 ..     532     559 ..     530     573 .. 0.87
   2 !   10.6   0.1   0.00097      0.87       7      30 ..     578     601 ..     572     611 .. 0.90
   3 !   11.1   0.1   0.00066      0.59       7      31 ..     662     686 ..     661     700 .. 0.85
   4 ?    6.7   0.1     0.017        15       7      30 ..     704     727 ..     703     737 .. 0.88
   5 !    9.2   0.8    0.0026       2.3       7      30 ..     746     769 ..     745     779 .. 0.87

  Alignments for each domain:
  == domain 1  score: 6.0 bits;  conditional E-value: 0.028
      TPR_14   3 allalaeallalGdpdeAiallrralal 30 
                 ++ ala++l  +G++ e++ llr+al++
  KOO21343.1 532 LQDALARLLQVQGKLIESEPLLREALEA 559
                 6889**********************95 PP

  == domain 2  score: 10.6 bits;  conditional E-value: 0.00097
      TPR_14   7 laeallalGdpdeAiallrralal 30 
                 l+++l+  G++deA++llr+al+ 
  KOO21343.1 578 LGSLLFDKGKLDEAATLLREALEN 601
                 8999*****************984 PP

  == domain 3  score: 11.1 bits;  conditional E-value: 0.00066
      TPR_14   7 laeallalGdpdeAiallrralala 31 
                 l++++  +G++deA+ l+r+al++ 
  KOO21343.1 662 LGRLFKDQGKLDEAAPLFREALEAS 686
                 7899******************964 PP

  == domain 4  score: 6.7 bits;  conditional E-value: 0.017
      TPR_14   7 laeallalGdpdeAiallrralal 30 
                 l+ +l  +G++d+A+ ll++a+++
  KOO21343.1 704 LGLLLKDQGKLDKAAPLLKEAVEA 727
                 6778999**************985 PP

  == domain 5  score: 9.2 bits;  conditional E-value: 0.0026
      TPR_14   7 laeallalGdpdeAiallrralal 30 
                 l+ +l a+G++deA+ ll++al++
  KOO21343.1 746 LGLLLQAQGKLDEAAPLLQEALEA 769
                 6778999***************96 PP

>> TPR_17  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.5   0.0      0.54   4.8e+02      13      32 ..     572     591 ..     566     592 .. 0.84
   2 ?   -1.3   0.0       4.4   3.9e+03      14      29 ..     615     630 ..     615     633 .. 0.84
   3 ?    6.4   0.0     0.014        13      14      32 ..     657     675 ..     650     676 .. 0.86
   4 ?    5.7   0.1     0.025        22      16      32 ..     701     717 ..     699     718 .. 0.91
   5 ?    4.9   0.1     0.044        39      16      32 ..     743     759 ..     740     760 .. 0.92

  Alignments for each domain:
  == domain 1  score: 1.5 bits;  conditional E-value: 0.54
      TPR_17  13 adaynnLAelllknGdlmtA 32 
                  ++ n L+ ll  +G+l++A
  KOO21343.1 572 LESINHLGSLLFDKGKLDEA 591
                 578899***********998 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 4.4
      TPR_17  14 daynnLAelllknGdl 29 
                 d+ n L++ll+ +G+l
  KOO21343.1 615 DSINHLGRLLHVRGKL 630
                 57799******99987 PP

  == domain 3  score: 6.4 bits;  conditional E-value: 0.014
      TPR_17  14 daynnLAelllknGdlmtA 32 
                  + nnL++l++ +G+l++A
  KOO21343.1 657 TSINNLGRLFKDQGKLDEA 675
                 578**************98 PP

  == domain 4  score: 5.7 bits;  conditional E-value: 0.025
      TPR_17  16 ynnLAelllknGdlmtA 32 
                  nnL+ ll+ +G+l++A
  KOO21343.1 701 INNLGLLLKDQGKLDKA 717
                 69************998 PP

  == domain 5  score: 4.9 bits;  conditional E-value: 0.044
      TPR_17  16 ynnLAelllknGdlmtA 32 
                  nnL+ ll  +G+l++A
  KOO21343.1 743 INNLGLLLQAQGKLDEA 759
                 69*************98 PP

>> TPR_19  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.0   0.2    0.0021       1.9      14      55 ..     553     602 ..     540     606 .. 0.76
   2 !    7.1   0.2    0.0085       7.6       3      21 ..     668     686 ..     627     692 .. 0.81
   3 !   11.1   1.8   0.00048      0.43       3      55 ..     668     728 ..     666     734 .. 0.81
   4 !   10.1   5.4   0.00098      0.88       3      62 ..     710     778 ..     707     782 .. 0.83

  Alignments for each domain:
  == domain 1  score: 9.0 bits;  conditional E-value: 0.0021
      TPR_19  14 leqalqe........dpknaearllLAeallalgqldeAealLdalpeed 55 
                 l++al++         p+ +e    L  +l+  g ldeA  lL +++e  
  KOO21343.1 553 LREALEArraafgdrHPDTLESINHLGSLLFDKGKLDEAATLLREALENS 602
                 5555533333444449999999*********************9998875 PP

  == domain 2  score: 7.1 bits;  conditional E-value: 0.0085
      TPR_19   3 aegdyaeAlalleqalqed 21 
                 ++g+++eA++l+++al+++
  KOO21343.1 668 DQGKLDEAAPLFREALEAS 686
                 5788888888888888775 PP

  == domain 3  score: 11.1 bits;  conditional E-value: 0.00048
      TPR_19   3 aegdyaeAlalleqalqedpk.....naearl...lLAeallalgqldeAealLdalpeed 55 
                 ++g+++eA++l+++al+++       +a  +l   +L  +l  +g ld+A  lL+++ e+ 
  KOO21343.1 668 DQGKLDEAAPLFREALEASRAtlgdrHATTLLsinNLGLLLKDQGKLDKAAPLLKEAVEAR 728
                 79**************996666665544444445699*****************9998876 PP

  == domain 4  score: 10.1 bits;  conditional E-value: 0.00098
      TPR_19   3 aegdyaeAlalleqalqe........dpknaearllLAeallalgqldeAealLdalpeedpdd.arya 62 
                 ++g+++ A++ll++a ++         p+ +    +L  +l a+g ldeA  lL++++e+ + + ++ +
  KOO21343.1 710 DQGKLDKAAPLLKEAVEArratlgdqHPQTLFSINNLGLLLQAQGKLDEAAPLLQEALEARRATlPYQH 778
                 79************9966555555447777777779***********************9998756555 PP

>> Osmo_CC  Osmosensory transporter coiled coil
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.2   0.2    0.0067         6       8      34 ..     453     482 ..     451     489 .. 0.76
   2 ?    4.9   0.0     0.036        32      29      44 ..     555     570 ..     554     571 .. 0.93
   3 ?   -1.2   0.0       2.8   2.5e+03       9      41 ..     594     609 ..     588     610 .. 0.51
   4 ?    2.4   0.0      0.21   1.9e+02      29      44 ..     639     654 ..     638     655 .. 0.90
   5 ?   -2.0   0.0       4.9   4.4e+03      29      42 ..     681     694 ..     681     695 .. 0.91
   6 ?    5.5   0.1     0.023        21      30      44 ..     724     738 ..     719     739 .. 0.88
   7 ?   -0.4   0.1       1.6   1.4e+03      29      42 ..     765     778 ..     757     780 .. 0.82

  Alignments for each domain:
  == domain 1  score: 7.2 bits;  conditional E-value: 0.0067
                 XXXXXXXTHHHHHHHHHH...HHHHHHHHH CS
     Osmo_CC   8 elLqehYdnIEqkvedid...eeIaaLeek 34 
                 +lL  ++d+IE  v  id   ++I ++e +
  KOO21343.1 453 ALLTTRFDEIESIVAGIDaadAQISKIEDR 482
                 69*********9987776222678777765 PP

  == domain 2  score: 4.9 bits;  conditional E-value: 0.036
                 HHHHHHHHHHHHH--- CS
     Osmo_CC  29 aaLeekRqrLvdqHPk 44 
                 +aLe++R  + d+HP+
  KOO21343.1 555 EALEARRAAFGDRHPD 570
                 68*************7 PP

  == domain 3  score: -1.2 bits;  conditional E-value: 2.8
                 XXXXXXTHHHHHHHHHHHHHHHHHHHHHHHHHH CS
     Osmo_CC   9 lLqehYdnIEqkvedideeIaaLeekRqrLvdq 41 
                 lL+e+                 Le+ R +L d+
  KOO21343.1 594 LLREA-----------------LENSRATLGDR 609
                 55554.................45555555555 PP

  == domain 4  score: 2.4 bits;  conditional E-value: 0.21
                 HHHHHHHHHHHHH--- CS
     Osmo_CC  29 aaLeekRqrLvdqHPk 44 
                 +aLe  R +L d+HP+
  KOO21343.1 639 EALEVSRATLGDRHPD 654
                 579999*********7 PP

  == domain 5  score: -2.0 bits;  conditional E-value: 4.9
                 HHHHHHHHHHHHH- CS
     Osmo_CC  29 aaLeekRqrLvdqH 42 
                 +aLe+ R +L d+H
  KOO21343.1 681 EALEASRATLGDRH 694
                 58999********9 PP

  == domain 6  score: 5.5 bits;  conditional E-value: 0.023
                 HHHHHHHHHHHH--- CS
     Osmo_CC  30 aLeekRqrLvdqHPk 44 
                 a e++R +L dqHP+
  KOO21343.1 724 AVEARRATLGDQHPQ 738
                 6788**********7 PP

  == domain 7  score: -0.4 bits;  conditional E-value: 1.6
                 HHHHHHHHHHHHH- CS
     Osmo_CC  29 aaLeekRqrLvdqH 42 
                 +aLe++R +L  qH
  KOO21343.1 765 EALEARRATLPYQH 778
                 57888999998888 PP

>> TPR_3  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.9   0.0     0.015        13       6      23 ..     577     594 ..     572     596 .. 0.84
   2 ?   -0.1   0.0       1.1   9.5e+02      13      26 ..     668     679 ..     665     682 .. 0.86
   3 ?   -2.0   0.0       4.2   3.8e+03      13      21 ..     710     718 ..     705     721 .. 0.86
   4 ?    5.4   0.0      0.02        18       7      25 ..     746     764 ..     743     767 .. 0.90

  Alignments for each domain:
  == domain 1  score: 5.9 bits;  conditional E-value: 0.015
                 HHHHHHHHTT-HHHHHHH CS
       TPR_3   6 syAaefynkkkyqeArel 23 
                  ++  +++k+k++eA+ l
  KOO21343.1 577 HLGSLLFDKGKLDEAATL 594
                 58999**********998 PP

  == domain 2  score: -0.1 bits;  conditional E-value: 1.1
                 HTT-HHHHHHH..H CS
       TPR_3  13 nkkkyqeArelfsY 26 
                 +++k++eA+ l  +
  KOO21343.1 668 DQGKLDEAAPL--F 679
                 59******998..4 PP

  == domain 3  score: -2.0 bits;  conditional E-value: 4.2
                 HTT-HHHHH CS
       TPR_3  13 nkkkyqeAr 21 
                 +++k+++A+
  KOO21343.1 710 DQGKLDKAA 718
                 59******8 PP

  == domain 4  score: 5.4 bits;  conditional E-value: 0.02
                 HHHHHHHTT-HHHHHHH.. CS
       TPR_3   7 yAaefynkkkyqeArelfs 25 
                 ++  ++ ++k++eA+ l++
  KOO21343.1 746 LGLLLQAQGKLDEAAPLLQ 764
                 68899*********98877 PP

>> ANAPC3  Anaphase-promoting complex, cyclosome, subunit 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.0   0.0     0.015        14      18      51 ..     567     601 ..     541     609 .. 0.79
   2 ?    1.5   0.1       0.4   3.6e+02      29      54 ..     704     730 ..     668     766 .. 0.51
   3 !    7.0   0.1    0.0078         7       5      71 ..     714     787 ..     710     789 .] 0.72

  Alignments for each domain:
  == domain 1  score: 6.0 bits;  conditional E-value: 0.015
                 HHH--HHHHHHHHHHHHHTT-HHHHHHHHHCT.SH CS
      ANAPC3  18 aetespedayllAlclylngqykrAyellrka.kl 51 
                 ++++ +e++  l+  l+  g+ ++A +llr+a + 
  KOO21343.1 567 RHPDTLESINHLGSLLFDKGKLDEAATLLREAlEN 601
                 678899999999******************99333 PP

  == domain 2  score: 1.5 bits;  conditional E-value: 0.4
                 HHHHHHHTT-HHHHHHHHHCT.SHHHC CS
      ANAPC3  29 lAlclylngqykrAyellrka.klnsk 54 
                 l+l l  +g+ ++A  ll++a + +  
  KOO21343.1 704 LGLLLKDQGKLDKAAPLLKEAvEARRA 730
                 577777777777777777776554443 PP

  == domain 3  score: 7.0 bits;  conditional E-value: 0.0078
                 HHHHHHHHHHHH.........HHH--HHHHHHHHHHHHHTT-HHHHHHHHHCTSHHHC-HHHHHHHHHHHHHTT- CS
      ANAPC3   5 yknAiflaerll........aaetespedayllAlclylngqykrAyellrkaklnskslgcrylfAqcllkLkk 71 
                 +++A  l+  ++         ++++ + ++  l+l l  +g+ ++A  ll++a l+ +     y +Aq+l+ +++
  KOO21343.1 714 LDKAAPLLKEAVearratlgDQHPQTLFSINNLGLLLQAQGKLDEAAPLLQEA-LEARRATLPYQHAQTLFSISN 787
                 555555555555444432222455555566668********************.88899999********98876 PP

>> TPR_6  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.3   0.0      0.17   1.5e+02       6      29 ..     578     601 ..     577     602 .. 0.85
   2 ?    3.6   0.0      0.14   1.2e+02       5      28 ..     661     684 ..     661     685 .. 0.89
   3 ?    2.1   0.0      0.42   3.8e+02       5      28 ..     703     726 ..     703     728 .. 0.87
   4 ?    4.9   0.2     0.055        49       5      28 ..     745     768 ..     745     770 .. 0.91

  Alignments for each domain:
  == domain 1  score: 3.3 bits;  conditional E-value: 0.17
                 HHHHHHHHHHHHHHHHHHHHHHHH CS
       TPR_6   6 lalsyrklgdtdkAlealerlike 29 
                 l+ +++  g+ d+A ++l++ +++
  KOO21343.1 578 LGSLLFDKGKLDEAATLLREALEN 601
                 677788777**********99986 PP

  == domain 2  score: 3.6 bits;  conditional E-value: 0.14
                 HHHHHHHHHHHHHHHHHHHHHHHH CS
       TPR_6   5 klalsyrklgdtdkAlealerlik 28 
                 +l+++++ +g+ d+A  ++++ ++
  KOO21343.1 661 NLGRLFKDQGKLDEAAPLFREALE 684
                 58999************9998875 PP

  == domain 3  score: 2.1 bits;  conditional E-value: 0.42
                 HHHHHHHHHHHHHHHHHHHHHHHH CS
       TPR_6   5 klalsyrklgdtdkAlealerlik 28 
                 +l+l+++ +g+ dkA  +l++ ++
  KOO21343.1 703 NLGLLLKDQGKLDKAAPLLKEAVE 726
                 58999999*******999988775 PP

  == domain 4  score: 4.9 bits;  conditional E-value: 0.055
                 HHHHHHHHHHHHHHHHHHHHHHHH CS
       TPR_6   5 klalsyrklgdtdkAlealerlik 28 
                 +l+l+++++g+ d+A  +l++ ++
  KOO21343.1 745 NLGLLLQAQGKLDEAAPLLQEALE 768
                 599*****************9876 PP

>> TetR_C_18  Tetracyclin repressor-like, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.0       5.4   4.9e+03      27      43 ..     588     604 ..     585     619 .. 0.78
   2 ?    3.4   0.0      0.12   1.1e+02      22      43 ..     625     646 ..     621     653 .. 0.86
   3 ?    4.5   0.2     0.053        47      27      48 ..     672     692 ..     668     725 .. 0.81
   4 ?    1.3   0.3      0.54   4.8e+02      27      56 ..     714     743 ..     707     778 .. 0.59

  Alignments for each domain:
  == domain 1  score: -1.9 bits;  conditional E-value: 5.4
   TetR_C_18  27 ladaaplyrdapeaqda 43 
                 l++aa+l r+a e   a
  KOO21343.1 588 LDEAATLLREALENSRA 604
                 78899999999987766 PP

  == domain 2  score: 3.4 bits;  conditional E-value: 0.12
   TetR_C_18  22 avrvaladaaplyrdapeaqda 43 
                  vr  l ++aplyr+a e   a
  KOO21343.1 625 HVRGKLVETAPLYREALEVSRA 646
                 5789999*********999877 PP

  == domain 3  score: 4.5 bits;  conditional E-value: 0.053
   TetR_C_18  27 ladaaplyrdapeaqdaraagd 48 
                 l++aapl+r+a ea  a   gd
  KOO21343.1 672 LDEAAPLFREALEASRATL-GD 692
                 899***********99853.44 PP

  == domain 4  score: 1.3 bits;  conditional E-value: 0.54
   TetR_C_18  27 ladaaplyrdapeaqdaraagdrvfqvfmk 56 
                 l+ aapl ++a ea+ a    +    +f  
  KOO21343.1 714 LDKAAPLLKEAVEARRATLGDQHPQTLFSI 743
                 677888888888888776544444444433 PP

>> Lectin_N  Hepatic lectin, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.0       6.6   5.9e+03      56      86 ..     153     183 ..     147     189 .. 0.76
   2 ?    6.7   0.2    0.0062       5.6      53     118 ..     553     621 ..     525     626 .. 0.88
   3 ?    3.5   0.3     0.064        57      56     117 ..     682     746 ..     637     789 .] 0.63

  Alignments for each domain:
  == domain 1  score: -3.1 bits;  conditional E-value: 6.6
    Lectin_N  56 eLetLketfsnfssstlaeiqalssqggsls 86 
                  ++ L+ +++ f +   aei++l+++  +++
  KOO21343.1 153 RVVNLSGEYEKFKQLRAAEIKQLRAAEMKAG 183
                 4667888888888999999999998766655 PP

  == domain 2  score: 6.7 bits;  conditional E-value: 0.0062
    Lectin_N  53 LqreLetLketfsnfssstlaeiqalss...qggslsekvtsleaklekkqqdlkadhselllhvkqlv 118
                 L++ Le+ +++f +   +tl  i++l s     g+l+e  t l+  le+ +++l   h + l+ + +l 
  KOO21343.1 553 LREALEARRAAFGDRHPDTLESINHLGSllfDKGKLDEAATLLREALENSRATLGDRHRTTLDSINHLG 621
                 8999***********999*999999998666799*******************************9986 PP

  == domain 3  score: 3.5 bits;  conditional E-value: 0.064
    Lectin_N  56 eLetLketfsnfssstlaeiqalss...qggslsekvtsleaklekkqqdlkadhselllhvkql 117
                  Le+ ++t+ +  ++tl  i++l      +g+l++    l+  +e ++++l  +h + l+ + +l
  KOO21343.1 682 ALEASRATLGDRHATTLLSINNLGLllkDQGKLDKAAPLLKEAVEARRATLGDQHPQTLFSINNL 746
                 45555555555555555555554443323445555555555555555555555555555555444 PP

>> TPR_5  Tetratrico peptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.3   2.0       1.4   1.2e+03      18     113 ..     133     228 ..     118     231 .. 0.73
   2 ?    3.0   1.0      0.13   1.2e+02      41     101 ..     531     599 ..     516     605 .. 0.60
   3 ?    0.2   0.0      0.95   8.5e+02      16      30 ..     629     643 ..     624     665 .. 0.81
   4 ?   13.4   2.6   7.7e-05     0.069      14     101 ..     669     767 ..     660     784 .. 0.73

  Alignments for each domain:
  == domain 1  score: -0.3 bits;  conditional E-value: 1.4
       TPR_5  18 dkavplYrraLaeGLagarrrratiqLassLRnlGe..aeealaLLraeleapsdelddalaaflaLvLsdlgrereavsivllalaehlprYqRsvt 113
                 ++a+ l ++a a  +a+ ++ r ++ L+       +  a+e  +L  ae++a+ + l+  la  l  +++++  ++ ++++ + + a  +p  qR + 
  KOO21343.1 133 EEAIMLRQQAAA-DIAKFKQER-VVNLSGEYEKFKQlrAAEIKQLRAAEMKAGRERLEHVLADSLLEAIAAARVPKGTLQLPVRSHARRMPSGQRGMS 228
                 555555555533.344444433.456666666655511445567888999999999**9999999999999999******************999985 PP

  == domain 2  score: 3.0 bits;  conditional E-value: 0.13
       TPR_5  41 tiq..LassLRnlGeaeealaLLraeleap....sdelddalaaflaL..vLsdlgrereavsivllal 101
                 ++q  La  L + G++ e++ LLr+ lea+    +d   d l+++  L   L+d+g+  ea +++ +al
  KOO21343.1 531 KLQdaLARLLQVQGKLIESEPLLREALEARraafGDRHPDTLESINHLgsLLFDKGKLDEAATLLREAL 599
                 444446666777777777777777766654122245556666666555335677777777666555554 PP

  == domain 3  score: 0.2 bits;  conditional E-value: 0.95
       TPR_5  16 hedkavplYrraLae 30 
                 +  + +plYr+aL+ 
  KOO21343.1 629 KLVETAPLYREALEV 643
                 556789******985 PP

  == domain 4  score: 13.4 bits;  conditional E-value: 7.7e-05
       TPR_5  14 tGhedkavplYrraLaeGLagarrrratiqLass.....LRnlGeaeealaLLraeleapsdeldd....alaaf..laLvLsdlgrereavsivllal 101
                  G+ d+a+pl+r+aL++  a    r+at  L+       L+  G++++a  LL++ +ea+   l d     l ++  l L L ++g+  ea  ++ +al
  KOO21343.1 669 QGKLDEAAPLFREALEASRATLGDRHATTLLSINnlgllLKDQGKLDKAAPLLKEAVEARRATLGDqhpqTLFSInnLGLLLQAQGKLDEAAPLLQEAL 767
                 6999***************999999999877643333338999************99998766655111155544225678889999999876655555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (789 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       687  (0.0383178); expected 358.6 (0.02)
Passed bias filter:                      426  (0.0237604); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                        20  (0.00111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              20  [number of targets reported over threshold]
# CPU time: 0.72u 0.27s 00:00:00.99 Elapsed: 00:00:00.49
# Mc/sec: 4889.27
//
Query:       KOO21344.1  [L=490]
Description: hypothetical protein Ctob_002034 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.014   15.4   0.0      0.031   14.3   0.0    1.6  1  LRR_6     Leucine Rich repeat


Domain annotation for each model (and alignments):
>> LRR_6  Leucine Rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   0.0   1.7e-06     0.031       4      24 .]     418     438 ..     416     438 .. 0.88

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 1.7e-06
       LRR_6   4 hLteLdLsgNdIgDeGaeaLa 24 
                  +++LdLs+N+Ig  G  aLa
  KOO21344.1 418 RVETLDLSFNKIGTRGFAALA 438
                 579************988886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (490 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       393  (0.0219198); expected 358.6 (0.02)
Passed bias filter:                      266  (0.0148363); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.50u 0.24s 00:00:00.74 Elapsed: 00:00:00.41
# Mc/sec: 3589.54
//
Query:       KOO21345.1  [L=312]
Description: hypothetical protein Ctob_002031 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
  ------ inclusion threshold ------
      0.052   13.6   0.1         13    6.0   0.0    2.3  2  ClpB_D2-small  C-terminal, D2-small domain, of ClpB protein


Domain annotation for each model (and alignments):
>> ClpB_D2-small  C-terminal, D2-small domain, of ClpB protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.0   0.0    0.0007        13       5      41 ..      76     112 ..      73     119 .. 0.84
   2 ?    5.4   0.0     0.001        18      51      76 ..     248     273 ..     248     278 .. 0.87

  Alignments for each domain:
  == domain 1  score: 6.0 bits;  conditional E-value: 0.0007
                    HHHHHHHHHHHHHHHHSCTTTEEEEEHHHHHHHHHHH CS
  ClpB_D2-small   5 elkkIvdlalkklekrlkergvelevtdealdalaek 41 
                     +++ ++ ++++l+ rl++ + ++ + +e+++++++ 
     KOO21345.1  76 SIVEALRVQVAQLQSRLRASEARVAMWEECMQHMCQS 112
                    45556667**************************986 PP

  == domain 2  score: 5.4 bits;  conditional E-value: 0.001
                    CHHHHHHHHTHHHHHHHHHTTSSSTT CS
  ClpB_D2-small  51 pLrriiqreiedplaeeilsgelkeg 76 
                    pL+++i+  ++d++ ++i +++++++
     KOO21345.1 248 PLQTYIETVVQDEMHRWIRQNAVAPH 273
                    899***************99999863 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (312 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       760  (0.0423894); expected 358.6 (0.02)
Passed bias filter:                      541  (0.0301746); expected 358.6 (0.02)
Passed Vit filter:                        48  (0.00267723); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.53u 0.26s 00:00:00.79 Elapsed: 00:00:00.46
# Mc/sec: 2040.55
//
Query:       KOO21346.1  [L=632]
Description: hypothetical protein Ctob_002033 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (632 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       631  (0.0351944); expected 358.6 (0.02)
Passed bias filter:                      455  (0.0253779); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.57u 0.26s 00:00:00.83 Elapsed: 00:00:00.42
# Mc/sec: 4514.72
//
Query:       KOO21347.1  [L=123]
Description: hypothetical protein Ctob_002032 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (123 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       340  (0.0189637); expected 358.6 (0.02)
Passed bias filter:                      244  (0.0136092); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.23s 00:00:00.59 Elapsed: 00:00:00.38
# Mc/sec: 982.16
//
Query:       KOO21348.1  [L=532]
Description: tfp pilus assembly protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.2e-27   94.6   2.4    4.9e-16   58.8   0.1    4.5  4  TPR_12          Tetratricopeptide repeat
    1.7e-22   78.6  10.7    1.2e-08   34.6   0.0    4.8  6  TPR_10          Tetratricopeptide repeat
    8.4e-10   38.0   1.6      0.019   15.0   0.0    4.3  3  TPR_2           Tetratricopeptide repeat
    8.8e-09   34.8   0.2      0.011   15.5   0.0    3.8  4  TPR_1           Tetratricopeptide repeat
    2.2e-08   33.6   0.1     0.0019   18.1   0.0    4.1  4  TPR_7           Tetratricopeptide repeat
     0.0054   16.4   1.8      0.012   15.2   0.0    2.5  3  TPR_11          TPR repeat
  ------ inclusion threshold ------
      0.011   16.5  12.7       0.15   13.0   0.0    6.0  6  TPR_14          Tetratricopeptide repeat
       0.12   12.6   2.6        5.5    7.5   0.0    4.3  5  TPR_8           Tetratricopeptide repeat
        0.2    9.1  11.5       0.27    8.7  11.5    1.1  1  DUF3584         Protein of unknown function (DUF3584)
       0.25    9.9   8.9       0.52    8.8   8.9    1.5  1  DUF3138         Protein of unknown function (DUF3138)
       0.27   10.7   6.9       0.82    9.1   0.3    2.2  2  Leu_zip         Leucine zipper
       0.34   10.0   8.8       0.63    9.1   8.8    1.4  1  CCDC144C        CCDC144C protein coiled-coil region
       0.83   10.6   9.1        2.6    9.0   0.8    2.7  2  CSN5_C          Cop9 signalosome subunit 5 C-terminal domain
        8.6    6.5   7.3        6.5    6.8   1.5    2.6  2  COG2            COG (conserved oligomeric Golgi) complex comp


Domain annotation for each model (and alignments):
>> TPR_12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   0.4   4.7e-06     0.006       8      77 .]     356     431 ..     349     431 .. 0.73
   2 !   28.5   0.0   1.1e-09   1.4e-06       6      55 ..     402     451 ..     397     452 .. 0.93
   3 !   58.8   0.1   3.8e-19   4.9e-16       1      75 [.     439     513 ..     439     515 .. 0.96
   4 !   11.0   0.0   0.00031       0.4      15      52 ..     495     532 .]     495     532 .] 0.96

  Alignments for each domain:
  == domain 1  score: 16.9 bits;  conditional E-value: 4.7e-06
      TPR_12   8 nlaavlrrlgrydeAlellekaleiarrll.....Gpdh.pltattlrnLgrlyralgryeeAlelleealaiaek 77 
                  + +v r+  + +e ++ +++a+e arr+       ++  +++a+ l nL+r yr+ g ++ A+ l+  alai+ek
  KOO21348.1 356 AWSDVQRAKRQAEETEARFDRAREFARRTAvekeeMENTlLDVASDLENLARNYRQHGSPAMAVPLYVSALAIFEK 431
                 5666666777777777777777777665431222234444899******************************996 PP

  == domain 2  score: 28.5 bits;  conditional E-value: 1.1e-09
      TPR_12   6 lnnlaavlrrlgrydeAlellekaleiarrllGpdhpltattlrnLgrly 55 
                 l nla  +r+ g  + A  l+  al+i++++lGp+hp++a+ l nLg ++
  KOO21348.1 402 LENLARNYRQHGSPAMAVPLYVSALAIFEKTLGPEHPQVASNLVNLGNAF 451
                 459********************************************875 PP

  == domain 3  score: 58.8 bits;  conditional E-value: 3.8e-19
      TPR_12   1 dvatalnnlaavlrrlgrydeAlellekaleiarrllGpdhpltattlrnLgrlyralgryeeAlelleealaia 75 
                 +va+ l+nl+++ + ++++ eA   + +al+i +++lG+dhp++a  l nLg++yralgr++ A  l+e+a +++
  KOO21348.1 439 QVASNLVNLGNAFCDQQKHIEAVPVYLRALAIDEKALGHDHPEVAMDLSNLGIAYRALGRPDIATGLFERAHKLM 513
                 5789999****************************************************************9876 PP

  == domain 4  score: 11.0 bits;  conditional E-value: 0.00031
      TPR_12  15 rlgrydeAlellekaleiarrllGpdhpltattlrnLg 52 
                 +lgr d A  l+e+a+ ++ ++ Gpd p t ++lrnLg
  KOO21348.1 495 ALGRPDIATGLFERAHKLMLAAVGPDDPKTQAILRNLG 532
                 58*****************9999**************8 PP

>> TPR_10  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.2       3.3   4.3e+03      17      33 ..     312     327 ..     310     328 .. 0.79
   2 ?   -3.1   0.1       6.2     8e+03      14      24 ..     345     355 ..     345     365 .. 0.69
   3 ?   -3.2   0.2       6.9   8.8e+03      17      28 ..     373     384 ..     372     385 .. 0.84
   4 !   23.5   0.0   2.8e-08   3.5e-05       5      41 ..     402     438 ..     399     439 .. 0.96
   5 !   34.6   0.0   9.1e-12   1.2e-08       1      42 []     440     481 ..     440     481 .. 0.96
   6 !   24.9   0.0     1e-08   1.3e-05       5      41 ..     486     522 ..     482     523 .. 0.95

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 3.3
      TPR_10  17 rydeAealleealairr 33 
                 +++eA+a+   al++++
  KOO21348.1 312 ERTEAVAI-MTALQTQE 327
                 68899999.78887765 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 6.2
      TPR_10  14 qrgrydeAeal 24 
                 q++ry++A++ 
  KOO21348.1 345 QVKRYEAAVES 355
                 56788888875 PP

  == domain 3  score: -3.2 bits;  conditional E-value: 6.9
      TPR_10  17 rydeAealleea 28 
                 r+d+A+++++++
  KOO21348.1 373 RFDRAREFARRT 384
                 899999999875 PP

  == domain 4  score: 23.5 bits;  conditional E-value: 2.8e-08
      TPR_10   5 lnNLanalrqrgrydeAealleealairrrllGpdHP 41 
                 l NLa+ +rq g  + A+ l+  alai +++lGp+HP
  KOO21348.1 402 LENLARNYRQHGSPAMAVPLYVSALAIFEKTLGPEHP 438
                 56**********************************9 PP

  == domain 5  score: 34.6 bits;  conditional E-value: 9.1e-12
      TPR_10   1 tAsslnNLanalrqrgrydeAealleealairrrllGpdHPd 42 
                 +As l NL+na ++++++ eA+  + +alai +++lG+dHP+
  KOO21348.1 440 VASNLVNLGNAFCDQQKHIEAVPVYLRALAIDEKALGHDHPE 481
                 578899***********************************7 PP

  == domain 6  score: 24.9 bits;  conditional E-value: 1e-08
      TPR_10   5 lnNLanalrqrgrydeAealleealairrrllGpdHP 41 
                 l+NL++a+r++gr d A  l+e+a  +  +++Gpd P
  KOO21348.1 486 LSNLGIAYRALGRPDIATGLFERAHKLMLAAVGPDDP 522
                 89*********************************88 PP

>> TPR_2  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.6   0.0     0.016        20       4      32 ..     402     430 ..     399     432 .. 0.90
   2 !   13.6   0.0   4.2e-05     0.054       4      33 ..     444     473 ..     441     474 .. 0.92
   3 !   15.0   0.0   1.5e-05     0.019       4      30 ..     486     512 ..     483     513 .. 0.93

  Alignments for each domain:
  == domain 1  score: 5.6 bits;  conditional E-value: 0.016
       TPR_2   4 lynlGlayyklgdyeeAleafekAleldP 32 
                 l nl++ y++ g ++ A+ ++  Al++ +
  KOO21348.1 402 LENLARNYRQHGSPAMAVPLYVSALAIFE 430
                 779**********************9875 PP

  == domain 2  score: 13.6 bits;  conditional E-value: 4.2e-05
       TPR_2   4 lynlGlayyklgdyeeAleafekAleldPn 33 
                 l nlG+a   ++++ eA+  + +Al++d++
  KOO21348.1 444 LVNLGNAFCDQQKHIEAVPVYLRALAIDEK 473
                 789************************975 PP

  == domain 3  score: 15.0 bits;  conditional E-value: 1.5e-05
       TPR_2   4 lynlGlayyklgdyeeAleafekAlel 30 
                 l nlG ay++lg+++ A  +fe+A +l
  KOO21348.1 486 LSNLGIAYRALGRPDIATGLFERAHKL 512
                 78**********************998 PP

>> TPR_1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.0       4.5   5.7e+03      15      22 ..     347     354 ..     345     355 .. 0.83
   2 ?    1.0   0.0      0.34   4.3e+02       6      31 ..     404     429 ..     402     431 .. 0.89
   3 !   15.5   0.0   8.9e-06     0.011       5      32 ..     445     472 ..     442     473 .. 0.94
   4 !   13.1   0.0   5.2e-05     0.066       4      30 ..     486     512 ..     484     512 .. 0.94

  Alignments for each domain:
  == domain 1  score: -2.6 bits;  conditional E-value: 4.5
                 T-HHHHHH CS
       TPR_1  15 gkydeAle 22 
                 ++y+ A+e
  KOO21348.1 347 KRYEAAVE 354
                 89****98 PP

  == domain 2  score: 1.0 bits;  conditional E-value: 0.34
                 HHHHHHHHTT-HHHHHHHHHHHHHHS CS
       TPR_1   6 nlGnayfklgkydeAleyyekALeln 31 
                 nl+  y++ g +  A+  y  AL + 
  KOO21348.1 404 NLARNYRQHGSPAMAVPLYVSALAIF 429
                 788889****************9985 PP

  == domain 3  score: 15.5 bits;  conditional E-value: 8.9e-06
                 HHHHHHHHHTT-HHHHHHHHHHHHHHST CS
       TPR_1   5 ynlGnayfklgkydeAleyyekALelnP 32 
                  nlGna+  ++k+ eA+  y +AL +++
  KOO21348.1 445 VNLGNAFCDQQKHIEAVPVYLRALAIDE 472
                 6*************************97 PP

  == domain 4  score: 13.1 bits;  conditional E-value: 5.2e-05
                 HHHHHHHHHHTT-HHHHHHHHHHHHHH CS
       TPR_1   4 lynlGnayfklgkydeAleyyekALel 30 
                 l nlG ay+ lg++d A   +e+A +l
  KOO21348.1 486 LSNLGIAYRALGRPDIATGLFERAHKL 512
                 68**********************887 PP

>> TPR_7  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.1       7.3   9.3e+03      23      33 ..     247     257 ..     247     259 .. 0.81
   2 ?    0.9   0.0      0.47     6e+02       3      30 ..     403     430 ..     402     436 .. 0.80
   3 !   18.1   0.0   1.5e-06    0.0019       2      31 ..     444     473 ..     444     478 .. 0.91
   4 !    8.9   0.0    0.0013       1.7       2      27 ..     486     509 ..     486     523 .. 0.83

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 7.3
       TPR_7  23 eqsLaltkdpe 33 
                 e++L+l+k+++
  KOO21348.1 247 EKQLELAKREL 257
                 78999999876 PP

  == domain 2  score: 0.9 bits;  conditional E-value: 0.47
       TPR_7   3 lnLarlysrlGdyeeAielyeqsLaltk 30 
                  nLar y++ G  + A+ ly  +La+ +
  KOO21348.1 403 ENLARNYRQHGSPAMAVPLYVSALAIFE 430
                 689999999999999*****99888755 PP

  == domain 3  score: 18.1 bits;  conditional E-value: 1.5e-06
       TPR_7   2 LlnLarlysrlGdyeeAielyeqsLaltkd 31 
                 L+nL++++++++++ eA+ +y ++La+++ 
  KOO21348.1 444 LVNLGNAFCDQQKHIEAVPVYLRALAIDEK 473
                 78*********************9999865 PP

  == domain 4  score: 8.9 bits;  conditional E-value: 0.0013
       TPR_7   2 LlnLarlysrlGdyeeAielyeqsLa 27 
                 L+nL+ +y++lG+ + A +l+e+  a
  KOO21348.1 486 LSNLGIAYRALGRPDIATGLFER--A 509
                 79********************9..2 PP

>> TPR_11  TPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.1       4.1   5.2e+03       9      15 ..     348     354 ..     343     355 .. 0.72
   2 !   15.2   0.0   9.7e-06     0.012       1      26 [.     448     473 ..     448     474 .. 0.96
   3 ?   -1.4   0.1       1.5   1.9e+03      32      42 .]     487     497 ..     486     497 .. 0.82

  Alignments for each domain:
  == domain 1  score: -2.8 bits;  conditional E-value: 4.1
      TPR_11   9 kyeeAie 15 
                 +ye+A+e
  KOO21348.1 348 RYEAAVE 354
                 6777776 PP

  == domain 2  score: 15.2 bits;  conditional E-value: 9.7e-06
      TPR_11   1 GdayyeqGkyeeAieaYkkAlkldPd 26 
                 G+a+++q+k  eA+ +Y +Al++d++
  KOO21348.1 448 GNAFCDQQKHIEAVPVYLRALAIDEK 473
                 9***********************86 PP

  == domain 3  score: -1.4 bits;  conditional E-value: 1.5
      TPR_11  32 ynLGlayykqG 42 
                 +nLG ay ++G
  KOO21348.1 487 SNLGIAYRALG 497
                 69****98777 PP

>> TPR_14  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.2       3.1   3.9e+03      14      43 ..     240     268 ..     233     270 .. 0.74
   2 ?   -1.1   0.1         4   5.1e+03      16      35 ..     341     360 ..     339     367 .. 0.77
   3 ?    0.4   1.0       1.3   1.6e+03       9      26 ..     366     383 ..     355     393 .. 0.78
   4 ?    1.8   0.0      0.46   5.9e+02       7      33 ..     405     431 ..     402     445 .. 0.83
   5 ?    3.6   0.0      0.12   1.5e+02       7      33 ..     447     473 ..     440     486 .. 0.86
   6 ?   13.0   0.0   0.00012      0.15       7      37 ..     489     524 ..     483     532 .] 0.80

  Alignments for each domain:
  == domain 1  score: -0.8 bits;  conditional E-value: 3.1
      TPR_14  14 lGdpdeAiallrralalaPddaeawlllaq 43 
                  Gd+++ ++ l+ a ++  +d+ea ++ a+
  KOO21348.1 240 MGDTAAVEKQLELA-KRELNDLEAKIESAR 268
                 67888888888888.777888888877776 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 4
      TPR_14  16 dpdeAiallrralalaPdda 35 
                 d+de ++ +++a++ a++d 
  KOO21348.1 341 DLDEQVKRYEAAVESAWSDV 360
                 78888999999999888774 PP

  == domain 3  score: 0.4 bits;  conditional E-value: 1.3
      TPR_14   9 eallalGdpdeAiallrr 26 
                 +a+++  ++d+A++ +rr
  KOO21348.1 366 QAEETEARFDRAREFARR 383
                 577788899999999988 PP

  == domain 4  score: 1.8 bits;  conditional E-value: 0.46
      TPR_14   7 laeallalGdpdeAiallrralalaPd 33 
                 la+ +++ G p+ A+ l+  ala + +
  KOO21348.1 405 LARNYRQHGSPAMAVPLYVSALAIFEK 431
                 788999****************96644 PP

  == domain 5  score: 3.6 bits;  conditional E-value: 0.12
      TPR_14   7 laeallalGdpdeAiallrralalaPd 33 
                 l+ a+  ++++ eA+ ++ rala + +
  KOO21348.1 447 LGNAFCDQQKHIEAVPVYLRALAIDEK 473
                 67788889999************8875 PP

  == domain 6  score: 13.0 bits;  conditional E-value: 0.00012
      TPR_14   7 laeallalGdpdeAiallrrala.....laPddaea 37 
                 l+ a++alG+pd A  l++ra +      +Pdd+ +
  KOO21348.1 489 LGIAYRALGRPDIATGLFERAHKlmlaaVGPDDPKT 524
                 899******************886665546777654 PP

>> TPR_8  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.2       5.4   6.9e+03      12      27 ..     255     270 ..     249     274 .. 0.79
   2 ?   -1.2   0.0       2.5   3.3e+03      14      23 ..     346     355 ..     342     356 .. 0.80
   3 ?   -0.6   0.0       1.7   2.2e+03       6      30 ..     404     428 ..     402     432 .. 0.84
   4 ?    7.5   0.0    0.0043       5.5       3      33 ..     443     473 ..     441     473 .. 0.91
   5 ?    1.0   0.0      0.51   6.5e+02       6      20 ..     488     502 ..     486     512 .. 0.81

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 5.4
                 HHTT-HHHHHHHHHHH CS
       TPR_8  12 lklgdyeeAkeyyeka 27 
                 ++l+d+e+ +e+ + a
  KOO21348.1 255 RELNDLEAKIESARAA 270
                 6899999989888877 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 2.5
                 TT-HHHHHHH CS
       TPR_8  14 lgdyeeAkey 23 
                  ++ye+A+e+
  KOO21348.1 346 VKRYEAAVES 355
                 5899999986 PP

  == domain 3  score: -0.6 bits;  conditional E-value: 1.7
                 HHHHHHHHTT-HHHHHHHHHHHHHH CS
       TPR_8   6 nlgsiylklgdyeeAkeyyekalel 30 
                 nl++ y++ g   +A+  y  al +
  KOO21348.1 404 NLARNYRQHGSPAMAVPLYVSALAI 428
                 89999***9*999999999888876 PP

  == domain 4  score: 7.5 bits;  conditional E-value: 0.0043
                 HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH CS
       TPR_8   3 ayynlgsiylklgdyeeAkeyyekaleldpd 33 
                  ++nlg++  +++++ eA+ +y +al +d++
  KOO21348.1 443 NLVNLGNAFCDQQKHIEAVPVYLRALAIDEK 473
                 5789************************985 PP

  == domain 5  score: 1.0 bits;  conditional E-value: 0.51
                 HHHHHHHHTT-HHHH CS
       TPR_8   6 nlgsiylklgdyeeA 20 
                 nlg +y+ lg+ + A
  KOO21348.1 488 NLGIAYRALGRPDIA 502
                 89*********9877 PP

>> DUF3584  Protein of unknown function (DUF3584)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.7  11.5   0.00021      0.27     359     529 ..     228     398 ..     213     409 .. 0.75

  Alignments for each domain:
  == domain 1  score: 8.7 bits;  conditional E-value: 0.00021
     DUF3584 359 eleeleeeldaltekhqdvqekydrrkqkikeeleeeleklker.leaire.ekdrlkaaieealealesqlrkqleaqkeelneeekelesrlselkl 455
                 + e++  +l+a+++   +v+++++  k +++ +le+++e  ++   + ++e + ++    ++++++a  +++++++e+  ++l+ e+ e    +  l++
  KOO21348.1 228 SAEQVVSSLRAIMGDTAAVEKQLELAKRELN-DLEAKIESARAAaGASTSEaGTAEGASGASSEMDATLAAWEAEEEEMATQLAAERTEAVAIMTALQT 325
                 5678888999999999999999998877775.45555555555523444440445558999999**********************9999999999988 PP

     DUF3584 456 rldsatateEeleqieeadealekaqeelekaeaevealqaeeeqlrkkrdeadealqkaerrleqlrqaleel 529
                 + +  +   E    +   de++++ ++++e+a  +v++++++ e+ ++++d a e  ++ +   e+  + l ++
  KOO21348.1 326 QENGGK-GGEGDGMKHDLDEQVKRYEAAVESAWSDVQRAKRQAEETEARFDRAREFARRTAVEKEEMENTLLDV 398
                 877654.4555555667788888888888888888888888888888888888888777777777766666555 PP

>> DUF3138  Protein of unknown function (DUF3138)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.8   8.9   0.00041      0.52      27     103 ..     243     322 ..     229     331 .. 0.78

  Alignments for each domain:
  == domain 1  score: 8.8 bits;  conditional E-value: 0.00041
     DUF3138  27 ikalkaqltalqrqvkelraalaaakaaaGgkissqkaaaaaaaa.aeaaaalt..eddvaqlkeqianaelkvdalqea 103
                  +a++ ql+  +r++++l+a +++a+aaaG+  s  ++a  a++a +e  a+l+  e + +++  q+a ++    a+ +a
  KOO21348.1 243 TAAVEKQLELAKRELNDLEAKIESARAAAGASTSEAGTAEGASGAsSEMDATLAawEAEEEEMATQLAAERTEAVAIMTA 322
                 578899*************************9999999987777644555555422677889999999887766666555 PP

>> Leu_zip  Leucine zipper
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.5   1.5     0.017        22     152     240 ..     246     327 ..     189     329 .. 0.68
   2 ?    9.1   0.3   0.00064      0.82     144     213 ..     341     411 ..     336     422 .. 0.87

  Alignments for each domain:
  == domain 1  score: 4.5 bits;  conditional E-value: 0.017
     Leu_zip 152 lEkqatsaleeksklekalkelqkelgekkdekenskeiskleeklaelkldlektleektasaksleedlastkhelLkvqeqLelae 240
                 +Ekq++ a       +++l++l+++++++++++  s++ +   e  +   ++++ tl + +a++++++++la  + e +++   L++ e
  KOO21348.1 246 VEKQLELA-------KRELNDLEAKIESARAAAGASTSEAGTAEGASGASSEMDATLAAWEAEEEEMATQLAAERTEAVAIMTALQTQE 327
                 22222222.......33444444444444433333333333444555667888889999999999999999999999999888888766 PP

  == domain 2  score: 9.1 bits;  conditional E-value: 0.00064
     Leu_zip 144 kLkerlkelEkqatsaleeksklekalkelqkelgekkdeke.nskeiskleeklaelkldlektleekta 213
                  L e++k++E+ ++sa ++ ++ +++ +e++++ + +++ ++ ++ e +++e++l ++ +dle+  +++ +
  KOO21348.1 341 DLDEQVKRYEAAVESAWSDVQRAKRQAEETEARFDRAREFARrTAVEKEEMENTLLDVASDLENLARNYRQ 411
                 699*****************************999998877747788899************998777654 PP

>> CCDC144C  CCDC144C protein coiled-coil region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.1   8.8   0.00049      0.63      61     228 ..     232     400 ..     227     408 .. 0.86

  Alignments for each domain:
  == domain 1  score: 9.1 bits;  conditional E-value: 0.00049
    CCDC144C  61 yngqLnvlkaentmlnskLekekqnkerleaevesyrsrLaaAiqdheqsqtskrdlelalqrerdewlrlqdklnfdvsnlkdknevLsqqLskaesk 159
                   + L++++ + + ++ +Le  k++ + lea++es r+   a ++++   + +   +  ++  +   w    +++  +++  + +   ++  L++ e+ 
  KOO21348.1 232 VVSSLRAIMGDTAAVEKQLELAKRELNDLEAKIESARAAAGASTSEAGTAEGAS-GASSEMDATLAAWEAEEEEMATQLAAERTEAVAIMTALQTQENG 329
                 5567889999999*************************9999999987665543.666667777777888889********************999998 PP

    CCDC144C 160 ansLene..lhetrdaLrektlllesvqrdlsqaqcqikeleqmyqneeekvnkyiakqesleerlaqlqs 228
                  +  e +   h++ ++++    ++es+  d ++a+ q+ e+e+    ++e   ++  ++e +e+ l  + s
  KOO21348.1 330 GKGGEGDgmKHDLDEQVKRYEAAVESAWSDVQRAKRQAEETEARFDRAREFARRTAVEKEEMENTLLDVAS 400
                 777665422688999************************************************99988876 PP

>> CSN5_C  Cop9 signalosome subunit 5 C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.0   0.8     0.002       2.6      13      53 ..     254     302 ..     248     326 .. 0.70
   2 ?    6.5   0.4     0.012        16      18      73 ..     341     408 ..     337     419 .. 0.81

  Alignments for each domain:
  == domain 1  score: 9.0 bits;  conditional E-value: 0.002
      CSN5_C  13 tkqisDLaeKlekaessvsrsrsaagtlseeaseaeekkk........k 53 
                  + ++DL++K+e a +++  s s+agt+++++  ++e ++        +
  KOO21348.1 254 KRELNDLEAKIESARAAAGASTSEAGTAEGASGASSEMDAtlaaweaeE 302
                 6789**************9999999888765544444433666654332 PP

  == domain 2  score: 6.5 bits;  conditional E-value: 0.012
      CSN5_C  18 DLaeKlekaessvsrsrsaagtlseeaseaeekkk............kkkedsqLakvvkdstkiase 73 
                 DL e +++ e++v++  s +++++++a+e+e++ +            k++ +++L +v+ d + +a  
  KOO21348.1 341 DLDEQVKRYEAAVESAWSDVQRAKRQAEETEARFDrarefarrtaveKEEMENTLLDVASDLENLARN 408
                 999999999999999998888888776655554448999999999999999**********9999876 PP

>> COG2  COG (conserved oligomeric Golgi) complex component, COG2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.0   0.2      0.16   2.1e+02      70     104 ..     235     269 ..     230     285 .. 0.66
   2 ?    6.8   1.5    0.0051       6.5      65     127 ..     340     403 ..     338     409 .. 0.75

  Alignments for each domain:
  == domain 1  score: 2.0 bits;  conditional E-value: 0.16
        COG2  70 eleevesplaaarkkvesvreklsereeeveskle 104
                 +l+ +  + aa+ k++e ++++l++ e+++es  +
  KOO21348.1 235 SLRAIMGDTAAVEKQLELAKRELNDLEAKIESARA 269
                 56666666677777777777777777777766544 PP

  == domain 2  score: 6.8 bits;  conditional E-value: 0.0051
        COG2  65 vglqeeleevesplaaarkkvesvreklsereeeveskleeakeleekr.ellklllkldevve 127
                 ++l+e++++ e  +++a+++v+ ++++ +e+e++ +   e a++ + ++ e+ + ll+++  +e
  KOO21348.1 340 HDLDEQVKRYEAAVESAWSDVQRAKRQAEETEARFDRAREFARRTAVEKeEMENTLLDVASDLE 403
                 5899******************************998766555555555344444555554444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (532 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1395  (0.0778069); expected 358.6 (0.02)
Passed bias filter:                      745  (0.0415528); expected 358.6 (0.02)
Passed Vit filter:                        95  (0.00529868); expected 17.9 (0.001)
Passed Fwd filter:                        25  (0.00139439); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              14  [number of targets reported over threshold]
# CPU time: 0.71u 0.30s 00:00:01.01 Elapsed: 00:00:00.43
# Mc/sec: 3698.43
//
Query:       KOO21349.1  [L=280]
Description: trafficking protein particle complex 8 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
  ------ inclusion threshold ------
      0.028   14.2   0.1      0.058   13.1   0.1    1.5  1  Glyco_transf_34  galactosyl transferase GMA12/MNN10 family
      0.049   11.9   0.2      0.071   11.3   0.2    1.2  1  tRNA-synt_1      tRNA synthetases class I (I, L, M and V)
      0.061   13.7   0.0       0.15   12.4   0.0    1.7  1  PilX             Type IV pilus assembly protein PilX C-term
      0.082   13.2   0.0       0.22   11.8   0.0    1.8  1  MHB              Haemophore, haem-binding


Domain annotation for each model (and alignments):
>> Glyco_transf_34  galactosyl transferase GMA12/MNN10 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.1   1.3e-05     0.058      63      82 ..      23      42 ..       5      46 .. 0.89

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 1.3e-05
  Glyco_transf_34 63 klpairaamkkyPeaewiWw 82
                     +l ai+a ++k+P+++w+W+
       KOO21349.1 23 QLKAIKAYLEKHPDIKWVWF 42
                     6899***************8 PP

>> tRNA-synt_1  tRNA synthetases class I (I, L, M and V)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.2   1.6e-05     0.071     469     542 ..      20     102 ..       5     110 .. 0.68

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 1.6e-05
  tRNA-synt_1 469 akdklkkekgelekdedvlDvWFsSgswpfstlgypeedteelkkffp..ad........mlleGlDiirgWvarlillslalt 542
                    ++lk  k  lek +d+  vWF+ +s+p +    pee + e++ + +  ad        +ll+G+   r+W    + +s++++
   KOO21349.1  20 DGEQLKAIKAYLEKHPDIKWVWFDYSSMPQGDDRTPEE-KAEFQLMLAaiADlyltahvlILLDGSYASRFWTLMEAWCSMQMV 102
                  3567788899**************************99.888876554123411111111345677777777777777777665 PP

>> PilX  Type IV pilus assembly protein PilX C-term
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   3.4e-05      0.15      18      67 ..      90     149 ..      45     151 .. 0.72

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 3.4e-05
        PilX  18 Wtt......ataataatglaavakqPrYiIEylgdnaagssen....ltsatsaayvYRI 67 
                 Wt        + +t+++  +a+++  rY IE +   ++++ ++    + s ++++ +YRI
  KOO21349.1  90 WTLmeawcsMQMVTSDGLRPATEAECRYTIECIHNADDKHDGEglvdKVSTKTPEEMYRI 149
                 44455555466677777788888899*****887777777777788999**********9 PP

>> MHB  Haemophore, haem-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0     5e-05      0.22      13      43 ..      21      52 ..      13      74 .. 0.81

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 5e-05
         MHB 13 sgVaastsaYLdthPdvnqaltslkgqpr.dq 43
                ++  ++ +aYL++hPd+  +  + +++p+ d+
  KOO21349.1 21 GEQLKAIKAYLEKHPDIKWVWFDYSSMPQgDD 52
                55668899**************9999999533 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (280 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       543  (0.0302861); expected 358.6 (0.02)
Passed bias filter:                      461  (0.0257125); expected 358.6 (0.02)
Passed Vit filter:                        55  (0.00306766); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.46u 0.26s 00:00:00.72 Elapsed: 00:00:00.42
# Mc/sec: 1989.68
//
Query:       KOO21350.1  [L=484]
Description: glycosyl transferase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.7e-25   88.8   0.0    6.4e-25   88.4   0.0    1.2  1  Glyco_tranf_2_3  Glycosyltransferase like family 2
    4.6e-19   69.1  16.4    1.1e-18   67.9  13.2    2.8  2  Glyco_trans_2_3  Glycosyl transferase family group 2
    1.3e-09   37.8   0.0    2.7e-09   36.7   0.0    1.4  1  Glyco_transf_21  Glycosyl transferase family 21
    7.3e-07   29.2   0.0    1.1e-06   28.5   0.0    1.2  1  Glycos_transf_2  Glycosyl transferase family 2
      4e-05   22.5   2.6      0.012   14.2   0.0    2.2  2  Chitin_synth_2   Chitin synthase


Domain annotation for each model (and alignments):
>> Glyco_tranf_2_3  Glycosyltransferase like family 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   88.4   0.0   1.8e-28   6.4e-25       1     230 []      70     302 ..      69     302 .. 0.86

  Alignments for each domain:
  == domain 1  score: 88.4 bits;  conditional E-value: 1.8e-28
  Glyco_tranf_2_3   1 prdlavlVptfneed..vlgevlesllaq.eyprvevvvvvdesd.....aetlevaeelaaalpdvrvrvvvnarnlgstgksralnealrav 86 
                      p  ++v+V+++  ++   +++++e++l q + p++ +  +v++       +etl+++e+   a+ + ++r+ ++ +   st+k+++ln+ l+++
       KOO21350.1  70 PA-VTVVVACYLPNEqvIIESTIEHILLQlDWPSDLTLHIVYNTPsalpfEETLRRLEGCHYAPRR-KLRI-TKVD--ASTSKAENLNHILPTI 158
                      55.9*******7777658899******662679977777775544458899999999998888877.8996.3444..689************* PP

  Glyco_tranf_2_3  87 ksdlvllvDdDtvvePdtlkrllqffltpkvgavgtpvflln.rstl.vsalgalefaerhlrflaarralgvltlnGsgslirrevlkelegl 178
                      ++++v+l D+D   + ++l rl+ ++l++++ a++++ + +n   +l  +a++a +f  ++++f+a+   +g+ +++Gs  l+r++vl+++  +
       KOO21350.1 159 TDEFVVLYDADHHPDTNSLVRLASALLRSEYVAMQGSTYIRNkQASLlARAVDAEFFVTHFIYFPAMEILGGTGYFGGSNALWRTRVLQQY-PF 251
                      **************************999999999999998733344255667778888999***********99****************.77 PP

  Glyco_tranf_2_3 179 dplflltdDyelglrlrragfrtayvpgaavrevfpsslkayikqrnRwvyg 230
                      d+   lt+D++ + r+   g+r+ ++p+a   e+ p+ + a+i qr Rw +g
       KOO21350.1 252 DR-ARLTEDVDVSARALLDGHRIGFCPKARSGELAPAGPRALISQRLRWFMG 302
                      77.9*********************************************986 PP

>> Glyco_trans_2_3  Glycosyl transferase family group 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.2   0.1      0.17     6e+02     140     180 ..       5      47 ..       3      80 .. 0.79
   2 !   67.9  13.2   3.1e-22   1.1e-18       2     193 ..     163     345 ..     162     427 .. 0.89

  Alignments for each domain:
  == domain 1  score: 0.2 bits;  conditional E-value: 0.17
  Glyco_trans_2_3 140 wayGc.el..eklillvrllgylgsllwsalplhlallllfsll 180
                      w+ Gc +l   + i lv+++ ++  l+++ l +++al+ ++ ++
       KOO21350.1   5 WFNGCtNLlcLPPI-LVDHFYFAIMLIANVLNCLVALASIYRVI 47 
                      99999744566666.89999999999999999999888776654 PP

  == domain 2  score: 67.9 bits;  conditional E-value: 3.1e-22
  Glyco_trans_2_3   2 illlDaDtvlppdclreiaaelaspevaivqgpvlvm.nvanwleelaalffaedhgkdilvrealgrvvpsvGsgaflrrsalqevggwdgde 94 
                      ++l DaD +++ ++l ++a+ l + e+ ++qg ++++   a++l++  +++f   h    +  e lg++  + Gs+a++r ++lq+  ++d   
       KOO21350.1 163 VVLYDADHHPDTNSLVRLASALLRSEYVAMQGSTYIRnKQASLLARAVDAEFFVTHFIYFPAMEILGGTGYFGGSNALWRTRVLQQY-PFD--R 253
                      899*****************99999***********945699*********9778888889999***********************.999..9 PP

  Glyco_trans_2_3  95 ssvsEDfdmglrlqrkGyrvrfvpeslvkekspltlraalrQrkRwayGceleklillvrllgylgsllwsalplhlallllfsllalalvlll 188
                        ++ED d + r++  G r+ f+p +   e  p   ra + Qr Rw++G      +  +++++y++++++s+l+l+  + +++ +   +l+l++
       KOO21350.1 254 ARLTEDVDVSARALLDGHRIGFCPKARSGELAPAGPRALISQRLRWFMG------W-EQVTHAYYWKVFVSGLSLRAKAGFCYLFHLRWLLLFA 340
                      *************************************************......6.7788999999999999977777777777666555555 PP

  Glyco_trans_2_3 189 lllla 193
                      ++l+a
       KOO21350.1 341 AALAA 345
                      55544 PP

>> Glyco_transf_21  Glycosyl transferase family 21
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.7   0.0   7.5e-13   2.7e-09      17     171 ..     146     299 ..     133     300 .. 0.81

  Alignments for each domain:
  == domain 1  score: 36.7 bits;  conditional E-value: 7.5e-13
  Glyco_transf_21  17 pKvnnllqaleaakydllvisDsdvrvkpdyLeellaaled.pkvglVtslpvgsdakglaaal.eaaflntlagvlqa..klsglgfavGksm 106
                       K  nl++ l+ +  +++v+ D+d++ +++ L +l+ al + + v++  s+++  ++++l a+   a f+ t+  ++ a   l+g+g   G+  
       KOO21350.1 146 SKAENLNHILPTITDEFVVLYDADHHPDTNSLVRLASALLRsEYVAMQGSTYIRNKQASLLARAvDAEFFVTHFIYFPAmeILGGTGYFGGSNA 239
                      5999**********************************9983556666667776666666555526667777755555545579********** PP

  Glyco_transf_21 107 alrreaLeaiGGfealadeLAeDyalgkllraaGlkvvlspapiaqtsvprrsslrallaRqlrW 171
                      ++r+++L+++  f      L eD   +++    G ++ ++p++ ++ ++      ral ++ lrW
       KOO21350.1 240 LWRTRVLQQYP-FDR--ARLTEDVDVSARALLDGHRIGFCPKA-RSGELA-PAGPRALISQRLRW 299
                      **********5.444..5***********************96.655554.45788999999999 PP

>> Glycos_transf_2  Glycosyl transferase family 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.5   0.0   3.1e-10   1.1e-06       2     168 ..      74     248 ..      73     249 .. 0.85

  Alignments for each domain:
  == domain 1  score: 28.5 bits;  conditional E-value: 3.1e-10
                      EEEEES..S-TTTHHHHHHHHHHH..GGCCEEEEEEEEES-SSCHHHHHGGGCH....C-TTEEEEEESSS-HHHHHHHHHHHH--SSEEEEEE CS
  Glycos_transf_2   2 vvipty..Neektlletlesllaq..dpypdfeiivvDDgStDetveileelak....edprvrvirreenvGkagalnaglraatgdyilflD 87 
                      vv+ +y  Ne+  ++ t+e +l q  +p +    iv +  S    +e l++l       + ++r+ + +  + ka +ln+ l   t +++++ D
       KOO21350.1  74 VVVACYlpNEQVIIESTIEHILLQldWPSDLTLHIVYNTPSALPFEETLRRLEGchyaPRRKLRITKVDASTSKAENLNHILPTITDEFVVLYD 167
                      78888855669999999*******9544444444555555788889999999889998666677777777778********************* PP

                      SSEEE-TTHHHHHHHHHHH.TTCEEEEEEEEEECCCCCCCHC-SSEEEECCHCCCCHCCCCCCSTTCSTCCCEEEEHHHHH CS
  Glycos_transf_2  88 aDdepdpdwleklvealekdgadvvlgqrprifgetdeiernkrvgenerlyfkerkrslkgnlsfeigsaallrrealee 168
                      aD+ pd + l +l+ al + ++ +  g+++ +++      r+   ++    +++    ++ g++ ++ gs+al r ++l++
       KOO21350.1 168 ADHHPDTNSLVRLASALLRSEYVAMQGSTYIRNKQASLLARAVDAEFFVTHFIYFPAMEILGGTGYFGGSNALWRTRVLQQ 248
                      *****************************************99999999999999999999999999*****999999976 PP

>> Chitin_synth_2  Chitin synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.2   0.0   3.4e-06     0.012     203     288 ..     161     245 ..     136     253 .. 0.85
   2 !    5.7   2.9    0.0013       4.7     343     449 ..     272     384 ..     264     430 .. 0.71

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 3.4e-06
  Chitin_synth_2 203 eivlmvdadtkvapdsltrlvaalvkdpeilglcGetkiankkeswvtaiqvfeyyishhlskafesvfGsvtclPGcfslyrika 288
                     e v++ dad +  ++sl rl +al++ +  +++ G t i nk+ s ++     e++++h        ++G+   + G  +l+r + 
      KOO21350.1 161 EFVVLYDADHHPDTNSLVRLASALLRSE-YVAMQGSTYIRNKQASLLARAVDAEFFVTHFIYFPAMEILGGTGYFGGSNALWRTRV 245
                     779999*****************99865.679****************9999*******998777778899988888888888765 PP

  == domain 2  score: 5.7 bits;  conditional E-value: 0.0013
  Chitin_synth_2 343 ktvfvpqakcktvaPdtfkvllsqrrrwi...nstvhnllelvlvrdl.....cGtf.cfsmrfv.vfieligtvvlPvaiaftlylivasilks 427
                     +  f p+a++   aP   + l+sqr rw    +   h     v v+ l      G++ +f +r++ +f   +++v+ Pv     +y +    ++ 
      KOO21350.1 272 RIGFCPKARSGELAPAGPRALISQRLRWFmgwEQVTHAYYWKVFVSGLslrakAGFCyLFHLRWLlLFAAALAAVINPVITSPFVYPLTSWTMEF 366
                     56799***********************83334577887777766555222226886469999762688999******99999999887777775 PP

  Chitin_synth_2 428 klvpviplvllaivlGlpaili 449
                     ++  + ++vl    +G+ a+l 
      KOO21350.1 367 QVCVMTAVVL----YGFVALLA 384
                     5544444444....44444443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (484 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       784  (0.043728); expected 358.6 (0.02)
Passed bias filter:                      391  (0.0218082); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.55u 0.25s 00:00:00.80 Elapsed: 00:00:00.40
# Mc/sec: 3607.59
//
Query:       KOO21351.1  [L=327]
Description: hypothetical protein Ctob_002025 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    5.5e-13   49.1   0.0    7.8e-13   48.6   0.0    1.2  1  FSH1            Serine hydrolase (FSH1)
  ------ inclusion threshold ------
      0.043   14.7   0.0      0.094   13.6   0.0    1.5  1  2OG-FeII_Oxy_3  2OG-Fe(II) oxygenase superfamily
      0.069   13.3   0.9       0.23   11.7   0.0    2.2  2  DUF4148         Domain of unknown function (DUF4148)


Domain annotation for each model (and alignments):
>> FSH1  Serine hydrolase (FSH1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.6   0.0   1.3e-16   7.8e-13      80     207 ..     156     281 ..     114     285 .. 0.88

  Alignments for each domain:
  == domain 1  score: 48.6 bits;  conditional E-value: 1.3e-16
        FSH1  80 kneyegleesldavkdyikengpfdGiiGFSqGaalaallaslleellkeashpslkfailvsGfkleepkyeeyy...eedkiqtptLhvlGelDtvv 175
                  + ++gl++++++v+ ++ ++ ++ Gi+G  qG+++aa++a+    ++      +l fai++ + +++ + y e+     + ++++ptLh l ++ t+ 
  KOO21351.1 156 GDGFKGLDKAVATVEAVLASRPEVAGIVGHEQGGTVAAVVAARAALGEG---PRPLAFAIICGASMPTAKPYTELLqrlRSAEVSIPTLHTLSNTGTLA 251
                 45689**************************************998775...678************99999997777788999**************9 PP

        FSH1 176 deerseaLaeafknsskvlkHpggHfvPnkke 207
                 +    e+La +f + +++l+H++g   P k+ 
  KOO21351.1 252 A--TGEELAACFGSGAEILWHEQGNAMPDKSW 281
                 9..99********************9999875 PP

>> 2OG-FeII_Oxy_3  2OG-Fe(II) oxygenase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.0   1.6e-05     0.094      25      60 ..      88     127 ..      78     151 .. 0.80

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 1.6e-05
                     .-.EEEEEEEEE.....E.T-B--EEE............- CS
  2OG-FeII_Oxy_3  25 sgqrrltvllyLne.kes.eeGGelelyekdk..eavkik 60 
                     +++r+lt+++y n  ++  ++GG+++ly++ +   +++++
      KOO21351.1  88 NDKRKLTAVYYANAgWDVaKQGGAIRLYDSLThpVYTDVA 127
                     468************7777********9987665444444 PP

>> DUF4148  Domain of unknown function (DUF4148)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   3.8e-05      0.23      33      48 ..      29      45 ..      28      51 .. 0.86
   2 ?   -1.5   0.3       0.5     3e+03      10      20 ..     191     201 ..     189     223 .. 0.65

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 3.8e-05
     DUF4148 33 VraELaqaeaaG.ylps 48
                Vr+ELaq+ ++G y+ps
  KOO21351.1 29 VRRELAQLFRDGaYSPS 45
                9***********98886 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 0.5
     DUF4148  10 laaavaaaaal 20 
                 +aa vaa aal
  KOO21351.1 191 VAAVVAARAAL 201
                 34444444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (327 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       384  (0.0214178); expected 358.6 (0.02)
Passed bias filter:                      330  (0.0184059); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.47u 0.24s 00:00:00.71 Elapsed: 00:00:00.43
# Mc/sec: 2302.20
//
Query:       KOO21352.1  [L=453]
Description: cyclic nucleotide-binding protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
      1e-21   77.3   4.7    1.5e-21   76.7   4.7    1.2  1  Ion_trans     Ion transport protein
    5.6e-10   39.0   1.0    5.6e-10   39.0   1.0    2.2  2  Ion_trans_2   Ion channel
     0.0046   17.0   0.0      0.014   15.4   0.0    1.8  1  cNMP_binding  Cyclic nucleotide-binding domain


Domain annotation for each model (and alignments):
>> Ion_trans  Ion transport protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   76.7   4.7   2.6e-25   1.5e-21      16     239 ..       3     276 ..       1     279 [. 0.81

  Alignments for each domain:
  == domain 1  score: 76.7 bits;  conditional E-value: 2.6e-25
                 HHHHHCCCSSSSHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHTH............HHHHHHCHSHHHHHHHHHHHHHHHHH........HHHH..... CS
   Ion_trans  16 cvflaletyfpedelektileilelvftaiftlemllkilalgl............likkrYlrdpwnilDflvvlpsllsl........vlse..... 89 
                 +++ ++e +f ed ++ + l+ ++ +++ +f++++++ ++ ++l            +i++ Yl++ w+++D+++++p+++ l        +        
  KOO21352.1   3 AIVTPFEVSFVEDAQCVDGLFLFNRIIDLLFLIDIVILFHLQYLddttglwvtsrrKIAWQYLKT-WFFFDLISIVPIYVLLfldanatcY--Pfvhdl 98 
                 6889999999**99999************************************************.9*************99665555550..055555 PP

                 .........................HHHHHHHHHHHHGGGGGGHHHCHSHHHHH........HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS CS
   Ion_trans  90 .........................esllllsvlrlfrvlrllklisrleglrt........lvtalirsvkdllnvlllllvvlfifaligvqlfkgk 155
                                           s+  +++lrl++++r+lk+ + + +l t        + +a+++++k ++ ++ ++++ ++ +  +   lf ++
  KOO21352.1  99 ippelgsgalggssprtarqerqaaLSVRTIRLLRLVKLARVLKAARLFTSLITdllvkyfeITYAVTEVAKLIIMIISIAHLSACTWNFVP-SLFVDD 196
                 66666666777777777888888887777788888888888888888888877788788888899999999999999999999999999997.888777 PP

                 CCCC...CCSCCSTSSSTTTSSS.SSSHHHHHHHHHHHHTTSSHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
   Ion_trans 156 lrek...necaktwenpnngntn.FdnfftallwlfrlmttegwgdilyatldekskvaliyfvifiilgsflllNlliaviadnfqe 239
                 l e+   ++  +++++++  + + F+ ++ al+w++ ++t++g+gdi ++++ e+       ++++++l++    + +i+ ia  ++ 
  KOO21352.1 197 LSESptwKRAMREDKGED--FDSpFEMYVAALYWATMTLTGIGYGDISPQNTPEQ------AVAVVLMLVTASAWASVIGTIAGVYST 276
                 774433222223333332..2224899****************************......999999999999989888888877765 PP

>> Ion_trans_2  Ion channel
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.1      0.91   5.4e+03      53      61 ..     171     179 ..     157     193 .. 0.50
   2 !   39.0   1.0   9.4e-14   5.6e-10      25      76 ..     222     273 ..     213     276 .. 0.90

  Alignments for each domain:
  == domain 1  score: -2.6 bits;  conditional E-value: 0.91
                  HHHHHHHHH CS
  Ion_trans_2  53 lftivyill 61 
                  l+++++ + 
   KOO21352.1 171 LIIMIISIA 179
                  444333333 PP

  == domain 2  score: 39.0 bits;  conditional E-value: 9.4e-14
                  HHHHHHHHHHHHTTS----SSTT.-----HHHHHHHHHHHHHHHHHHHHHHHH CS
  Ion_trans_2  25 fldalYfsfvtltTiGYGdivpe.tdagrlftivyillGlalfalflavlgkv 76 
                  ++ alY++++tlt iGYGdi+p+ t+  +++++v++l+  +  a ++ +++ v
   KOO21352.1 222 YVAALYWATMTLTGIGYGDISPQnTPE-QAVAVVLMLVTASAWASVIGTIAGV 273
                  678********************6666.*****************99999865 PP

>> cNMP_binding  Cyclic nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.0   2.4e-06     0.014      10      83 ..     380     447 ..     373     450 .. 0.75

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 2.4e-06
                   EE-TTSB-SEEEEEEES-EEEEEEETTS.EEEEEEE-TTEEESHHHHH....HTS-..-SSEEEESSTEEEEEEEHHHHH CS
  cNMP_binding  10 ifrqGdpadslyivlsGevrvyrlsedgkevvlavlgpGdlfGelall....tgep..rtatvvAltdsellalprddfl 83 
                   i+ +  p  +ly++++G v            + ++lg+G + Ge all           + ++vAlt +e+++l+r df 
    KOO21352.1 380 IVNERMPIGQLYVLKRGMVVK----------LYRFLGKGRVWGEDALLphvnF--AivDHSQAVALTFCECMVLRRHDFV 447
                   555666666666666666443..........5679999999999999987542..2347888****************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (453 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       539  (0.030063); expected 358.6 (0.02)
Passed bias filter:                      318  (0.0177366); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.51u 0.23s 00:00:00.74 Elapsed: 00:00:00.40
# Mc/sec: 3395.68
//
Query:       KOO21353.1  [L=174]
Description: hypothetical protein Ctob_002029 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    4.4e-09   36.5   1.2      6e-09   36.0   1.2    1.1  1  ARL2_Bind_BART  The ARF-like 2 binding protein BART


Domain annotation for each model (and alignments):
>> ARL2_Bind_BART  The ARF-like 2 binding protein BART
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.0   1.2   3.4e-13     6e-09       4     113 ..      52     166 ..      49     168 .. 0.90

  Alignments for each domain:
  == domain 1  score: 36.0 bits;  conditional E-value: 3.4e-13
                     HHHHHHHHHTS-HHHHHHHHHHHHHHHHTT--S.........S-SSTTHHHHHHHHHHHHHHHHHHHHTT-SSS--THHHHH....SS-GGSSHH CS
  ARL2_Bind_BART   4 wivesleeflaspefkspvqeFidencivFdde.........eenkleytdihkeYkklveklleslleeigismeeflealekslsekkevakk 89 
                     +++++ e  ++ ++  ++++eFi +n++  d +          e+++++  i++ Y++++e ll+++l++ g+s eefl a     +  + +a+ 
      KOO21353.1  52 TLMDAFETWFEREKIDDQIEEFIIRNAQHLDVTnaeleggtdGEQSHNWWPIYEIYQETFEALLQQFLDSAGCSAEEFLAAA----KDASGIAEM 142
                     5788999999999999***********99998767777777778999***********************************....666677889 PP

                     HHHHHHGGG-HHHHHHHHHHHHHH CS
  ARL2_Bind_BART  90 vfeqllaadDFeaFkkmMvkrnke 113
                     + +  l+++ +e+F++ M+++ k+
      KOO21353.1 143 YTKWFLSLSSYEMFVECMMDEEKR 166
                     99999**************99876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (174 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       478  (0.0266607); expected 358.6 (0.02)
Passed bias filter:                      410  (0.022868); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.23s 00:00:00.62 Elapsed: 00:00:00.38
# Mc/sec: 1375.00
//
Query:       KOO21354.1  [L=113]
Description: hypothetical protein Ctob_003151 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
     0.0077   16.4   0.1       0.01   16.0   0.1    1.2  1  DUF5442   Family of unknown function (DUF5442)
  ------ inclusion threshold ------
       0.03   14.4   2.1      0.035   14.1   2.1    1.1  1  RXT2_N    RXT2-like, N-terminal


Domain annotation for each model (and alignments):
>> DUF5442  Family of unknown function (DUF5442)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.1   1.2e-06      0.01      54      96 ..      28      71 ..      23      82 .. 0.84

  Alignments for each domain:
  == domain 1  score: 16.0 bits;  conditional E-value: 1.2e-06
     DUF5442 54 rtvnciikrfeddpqaylv.ndtlnyyykkdliptdpdeedpnd 96
                ++ +c+ kr  +d + y + +++  y+y+k ++p d  e+d ++
  KOO21354.1 28 KAEECVWKRVSKDGKHYRIiQHSTGYFYQKGFLPSDTAEQDEEE 71
                6779*************86267899***********98877654 PP

>> RXT2_N  RXT2-like, N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   2.1   3.9e-06     0.035      25      93 ..      30      99 ..      19     102 .. 0.62

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 3.9e-06
      RXT2_N 25 deelk.kkveyngserkilsrnpierskrkk....kekekeekeeeeedeegdeededdddeeeaeaaeenpyk 93
                + e   k v  +g++++i+++++     ++k    + ++ e++eeee +e++d+  e d++eee e+a e p k
  KOO21354.1 30 E-ECVwKRVSKDGKHYRIIQHSTGYF--YQKgflpS-DTAEQDEEEEINEDKDDAVEGDGEEEEGEEATEPPAK 99
                3.344499************888877..55568853.4444444444444555555555555566666666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (113 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       674  (0.0375927); expected 358.6 (0.02)
Passed bias filter:                      437  (0.0243739); expected 358.6 (0.02)
Passed Vit filter:                        49  (0.002733); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.36u 0.24s 00:00:00.60 Elapsed: 00:00:00.37
# Mc/sec: 907.20
//
Query:       KOO21355.1  [L=244]
Description: hypothetical protein Ctob_003146 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.9e-18   65.9  12.6      4e-18   65.5  12.6    1.1  1  AA_permease_2  Amino acid permease
      3e-09   36.0   7.7    2.2e-06   26.6   8.2    2.0  2  AA_permease    Amino acid permease
  ------ inclusion threshold ------
       0.81    9.8   6.4       0.53   10.4   2.6    2.5  2  MASE2          MASE2 domain


Domain annotation for each model (and alignments):
>> AA_permease_2  Amino acid permease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.5  12.6   6.7e-22     4e-18      33     274 ..       9     234 ..       1     240 [. 0.80

  Alignments for each domain:
  == domain 1  score: 65.5 bits;  conditional E-value: 6.7e-22
  AA_permease_2  33 ilwvwiavligslavllvyaElssalprsgGiyvytkaafgkkvaflsawfnwfayvpvlasilsvaasyllnalgpdlqgntwltyliaiailil 128
                    ++ + ++ +++sl+ +l+ aEls+a+p +gG +v++++a+gk +++  a++ w+ yv+ +a++ +++a+y  +++  +   +     l+a+ai+++
     KOO21355.1   9 FILLGVVPFVYSLPIALIVAELSTAFPEDGGYVVWVQEACGKNIGSHHAYWVWVIYVVDAAIYPVLVANYVDTMMPMSA--TG--RSLFAVAIVLG 100
                    33333456677799**********************************************9999999999988874343..33..6899******* PP

  AA_permease_2 129 valinirgikesakiqnilgilkillpliiliilglitvdgggfsslstetdtffpngwpgvllglli.vlwsfdGfesaanvsee..vkkkdvpk 221
                    v+lin+ g+  + k+++ l+i+++ +p +i+ +lgl      +f          + +  +  +  l   +lw ++Gf s    + e  ++++++ +
     KOO21355.1 101 VTLINLNGTDMMVKFNTLLAIISL-VPTLIFTALGLPNT---TFE-------RCVVSEGDVDWTLLVSwTLWLYCGFFSLGTLAGEleNPRRTFII 185
                    ************************.6*888887777663...554.......455555566677776669****************6666689*** PP

  AA_permease_2 222 aifigllivlvlyllvniaflgvvpddeianlsnlgsvaalffeavggkvvai 274
                    ai i + +vl+l++l   ++lg   dd ++      +++ +++ ++gg+++ +
     KOO21355.1 186 AIAILFPTVLLLNTLPLAVALGT--DDRLEHYT--AGYFNVLAGRLGGRWLDG 234
                    ***************95555554..55555322..247889999999999865 PP

>> AA_permease  Amino acid permease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.6   8.2   3.7e-10   2.2e-06      28     157 ..       5     134 ..       1     149 [. 0.85
   2 !    7.3   0.0   0.00026       1.6     212     238 ..     163     189 ..     151     208 .. 0.84

  Alignments for each domain:
  == domain 1  score: 26.6 bits;  conditional E-value: 3.7e-10
  AA_permease  28 plga.llayllagvviflvmlslgeiatngpksggfytyasrflgpelGfviGlnylfswitvlaleltaasiliqfwelvtdlpkawvtgavflvvl 124
                  pl + +l  ++++v ++ ++l+++e++t++p+ gg+ +++++  g+  G   ++  ++ +++ +a+  + ++ ++  +  +++      +++ +++ +
   KOO21355.1   5 PLYVfILLGVVPFVYSLPIALIVAELSTAFPEDGGYVVWVQEACGKNIGSHHAYWVWVIYVVDAAIYPVLVANYVDTMMPMSATG-RSLFAVAIVLGV 101
                  444446666788999999*************************************999999999888777777777776777777.777788899999 PP

  AA_permease 125 liinlvgvkvygeaefilalikiiaiiafiivg 157
                  ++inl g  +  ++ ++la+i ++  ++f  +g
   KOO21355.1 102 TLINLNGTDMMVKFNTLLAIISLVPTLIFTALG 134
                  *************************99998887 PP

  == domain 2  score: 7.3 bits;  conditional E-value: 0.00026
  AA_permease 212 ftGielvaiiagEvkdPeksiPkailq 238
                  + G+ +++++agE+++P+++  +ai  
   KOO21355.1 163 YCGFFSLGTLAGELENPRRTFIIAIAI 189
                  56999***************9888754 PP

>> MASE2  MASE2 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   2.6   8.8e-05      0.53      25      74 ..      55     103 ..      50     131 .. 0.82
   2 ?   -0.0   0.1      0.16   9.3e+02      30      47 ..     180     197 ..     157     212 .. 0.71

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 8.8e-05
       MASE2  25 hfslalllllvlnallwPhlayllarrsrdplrteqrlLliDallgGlwi 74 
                 h++ +++++ v+ a ++P+l+  +  +   p++++ r L++ a++ G+ +
  KOO21355.1  55 HHAYWVWVIYVVDAAIYPVLVANYVDT-MMPMSATGRSLFAVAIVLGVTL 103
                 5566***************98777654.6788888888888888888764 PP

  == domain 2  score: -0.0 bits;  conditional E-value: 0.16
       MASE2  30 lllllvlnallwPhlayl 47 
                   ++++++a+l+P +++l
  KOO21355.1 180 RRTFIIAIAILFPTVLLL 197
                 556788889999987765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (244 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       604  (0.0336884); expected 358.6 (0.02)
Passed bias filter:                      275  (0.0153383); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.41u 0.24s 00:00:00.64 Elapsed: 00:00:00.39
# Mc/sec: 1882.95
//
Query:       KOO21356.1  [L=192]
Description: hypothetical protein Ctob_003145 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.052   11.6   2.1      0.052   11.6   2.1    1.1  1  Fmp27     Mitochondrial protein from FMP27
        3.8    6.3   6.0        4.1    6.2   6.0    1.1  1  MDM10     Mitochondrial distribution and morphology protein 1


Domain annotation for each model (and alignments):
>> Fmp27  Mitochondrial protein from FMP27
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   2.1   5.8e-06     0.052     223     299 ..      33     111 ..      20     173 .. 0.89

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 5.8e-06
       Fmp27 223 nlvkqlkkskeekdeesvkaeerdeksledqseeleepg..skdekkvekvakslelvssllrliseiqikvenlglsd 299
                 ++ kq  k k+e+  ++++ae+r ++ l +  ee+ +++   +++++v+++++ +e ++  +++++e+ +k+e l + +
  KOO21356.1  33 KREKQVAKRKAESAAAKERAEKRKQEYLRQRAEEMAKDQsaRNEREEVRQFERAVEHARRKHMVYEEAVVKLEPLAIAR 111
                 667888999999999999*********************99999****************************9887765 PP

>> MDM10  Mitochondrial distribution and morphology protein 10
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.2   6.0   0.00045       4.1     329     396 ..      34     113 ..      11     165 .. 0.66

  Alignments for each domain:
  == domain 1  score: 6.2 bits;  conditional E-value: 0.00045
       MDM10 329 eeekekeeesvkskkeakkkkkekekeeekstfssslekadkeksveesfqakleWrldkeekeeek............k 396
                 +e++ +++++ +++ +++++k+++e  +++ +  ++ ++a++e++  ++f+  +e +++k+   ee+            +
  KOO21356.1  34 REKQVAKRKAESAAAKERAEKRKQEYLRQRAEEMAKDQSARNEREEVRQFERAVEHARRKHMVYEEAvvkleplaiareR 113
                 22222222223333333344444444455557777888889999999********9999887776665666665555440 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (192 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2894  (0.161414); expected 358.6 (0.02)
Passed bias filter:                      681  (0.0379832); expected 358.6 (0.02)
Passed Vit filter:                       101  (0.00563333); expected 17.9 (0.001)
Passed Fwd filter:                        15  (0.000836633); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.57u 0.32s 00:00:00.88 Elapsed: 00:00:00.43
# Mc/sec: 1343.92
//
Query:       KOO21357.1  [L=727]
Description: hypothetical protein Ctob_003148, partial [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    6.3e-08   32.8   0.0      0.019   15.4   0.0    2.4  2  LRR_4            Leucine Rich repeats (2 copies)
      1e-07   31.4   0.8      0.018   15.1   0.0    4.6  5  LRR_6            Leucine Rich repeat
    1.2e-07   31.6   0.0    2.2e-07   30.8   0.0    1.4  1  WW               WW domain
    3.9e-06   26.9   0.0    9.1e-06   25.7   0.0    1.6  1  MMR_HSR1         50S ribosome-binding GTPase
    0.00082   19.3   0.0      0.002   18.1   0.0    1.6  1  RsgA_GTPase      RsgA GTPase
  ------ inclusion threshold ------
      0.013   15.2   0.5        6.6    6.6   0.0    3.3  3  LRR_8            Leucine rich repeat
      0.034   13.2   0.0      0.061   12.4   0.0    1.3  1  IIGP             Interferon-inducible GTPase (IIGP)
      0.046   13.8   0.2       0.19   11.8   0.1    1.9  3  Dynamin_N        Dynamin family
      0.084   13.4   0.0       0.16   12.5   0.0    1.3  1  AAA_23           AAA domain
        0.1   12.3   0.1       0.91    9.2   0.1    2.1  2  Sigma54_activat  Sigma-54 interaction domain
       0.12   12.9   0.0       0.32   11.5   0.0    1.7  1  ABC_tran         ABC transporter
       0.18   11.1   0.1       0.35   10.2   0.1    1.4  1  AIG1             AIG1 family
       0.37   11.2   0.0       0.37   11.2   0.0    2.8  3  AAA_16           AAA ATPase domain


Domain annotation for each model (and alignments):
>> LRR_4  Leucine Rich repeats (2 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.0   1.4e-05     0.019       2      38 ..     547     590 ..     546     595 .. 0.84
   2 !   14.9   0.0   1.9e-05     0.026       2      33 ..     685     723 ..     684     726 .. 0.84

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 1.4e-05
                 S--EEE--SS---E-S-..HH.....H.-TT--EEE-.-S----- CS
       LRR_4   2 nLevLdLsnNqltdipl..le.....k.lpnLkeLdLsgNnlitd 38 
                 +L +Ld + N++ d +   l+     + l nL++L+L++N +i+d
  KOO21357.1 547 RLVFLDANRNHIGDQGAaaLAgaiakGaLANLQTLYLHSN-RIGD 590
                 5889**********99977447888966*********666.8877 PP

  == domain 2  score: 14.9 bits;  conditional E-value: 1.9e-05
                 S--EEE--SS---E-S-..HH.....H-TT--EEE-.-S CS
       LRR_4   2 nLevLdLsnNqltdipl..le.....klpnLkeLdLsgN 33 
                 +Le+L+L nN + + +   l       lp Lk+LdL gN
  KOO21357.1 685 KLEKLWLYNNLMGSAGVaaLTaaadaALPALKSLDLVGN 723
                 7********998888886633677756*********999 PP

>> LRR_6  Leucine Rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   0.0       1.4   1.9e+03      12      24 .]     525     537 ..     524     537 .. 0.87
   2 !    8.6   0.0    0.0015       2.1      11      24 .]     554     567 ..     546     567 .. 0.86
   3 !   15.1   0.0   1.3e-05     0.018       4      24 .]     577     597 ..     574     597 .. 0.94
   4 ?   -1.9   0.0       3.5   4.8e+03      12      23 ..     693     704 ..     685     704 .. 0.76
   5 ?    1.7   0.0      0.25   3.4e+02       5      14 ..     715     724 ..     712     724 .. 0.92

  Alignments for each domain:
  == domain 1  score: -0.6 bits;  conditional E-value: 1.4
       LRR_6  12 gNdIgDeGaeaLa 24 
                 + +++D+G+  La
  KOO21357.1 525 WTQVDDAGMVELA 537
                 6799*****9997 PP

  == domain 2  score: 8.6 bits;  conditional E-value: 0.0015
       LRR_6  11 sgNdIgDeGaeaLa 24 
                 + N+IgD+Ga aLa
  KOO21357.1 554 NRNHIGDQGAAALA 567
                 68**********98 PP

  == domain 3  score: 15.1 bits;  conditional E-value: 1.3e-05
       LRR_6   4 hLteLdLsgNdIgDeGaeaLa 24 
                 +L++L L +N IgD+Ga aLa
  KOO21357.1 577 NLQTLYLHSNRIGDAGAVALA 597
                 89******************8 PP

  == domain 4  score: -1.9 bits;  conditional E-value: 3.5
       LRR_6  12 gNdIgDeGaeaL 23 
                  N +g +G+ aL
  KOO21357.1 693 NNLMGSAGVAAL 704
                 4559****9997 PP

  == domain 5  score: 1.7 bits;  conditional E-value: 0.25
       LRR_6   5 LteLdLsgNd 14 
                 L++LdL gN+
  KOO21357.1 715 LKSLDLVGNQ 724
                 9********7 PP

>> WW  WW domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.8   0.0   1.6e-10   2.2e-07       1      31 []     648     678 ..     648     678 .. 0.97

  Alignments for each domain:
  == domain 1  score: 30.8 bits;  conditional E-value: 1.6e-10
                 X-TTEEEEE-TTTT-EEEEETTT--EESS-- CS
          WW   1 LPpGWeeqwdpdsGrvYYyNheTgetqWekP 31 
                 L pGWe++ d+++G  Y++  eTget+We P
  KOO21357.1 648 LAPGWEAHEDEETGALYFFRAETGETSWEMP 678
                 679**************************99 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.7   0.0   6.6e-09   9.1e-06       2      86 ..      57     166 ..      56     205 .. 0.68

  Alignments for each domain:
  == domain 1  score: 25.7 bits;  conditional E-value: 6.6e-09
                 EEEEESTTSSHHHHHHHHHT........STEEESSSTTSSSSEEEEEEEETTEE................EEEEECGGCSSHHHHHHHHHHHHHHHHC. CS
    MMR_HSR1   2 vaivGrpNvGKStLinaltg........ekaivsdkpgtTrdinegrvklkgke................ielvDtpGliegaseekglgkaflalee. 75 
                 v+++G++ +GKS +in l g        ++  vs+   +T  ++ g+ + +  e                + ++D+pG++++   e ++++a+  ++  
  KOO21357.1  57 VVVLGNTGAGKSAFINLLHGctfelsadDTMVVSRASAVTELMIIGHTNRS--EtfapqvesaaeslgegFAFADCPGFLDNRGFEINVANAVNVKQTi 153
                 89****************987777765337788999999999999988822..12344455555555555********987444444444444432222 PP

                 ..TSEEEEEEETT CS
    MMR_HSR1  76 ..adlillvvdas 86 
                   a  +l+vv ++
  KOO21357.1 154 saAASVLVVVIIN 166
                 2333344443333 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.1   0.0   1.4e-06     0.002      90     123 ..      45      82 ..      30     135 .. 0.72

  Alignments for each domain:
  == domain 1  score: 18.1 bits;  conditional E-value: 1.4e-06
                  HHHHHHHCTTSEEEEECSTTSSHHHHHHHHCTT....- CS
  RsgA_GTPase  90 leelkellkdktsvlvGqSGvGKStLinallpe....l 123
                   ++ +++l ++++v++G++G+GKS++in l++      
   KOO21357.1  45 QAQSRHALGKRCVVVLGNTGAGKSAFINLLHGCtfelS 82 
                  4556778999********************99644440 PP

>> LRR_8  Leucine rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   0.0      0.87   1.2e+03      47      61 .]     544     558 ..     541     558 .. 0.89
   2 ?    6.6   0.0    0.0048       6.6      24      37 ..     575     588 ..     564     599 .. 0.67
   3 ?    4.4   0.1     0.024        32      46      60 ..     710     724 ..     682     724 .. 0.79

  Alignments for each domain:
  == domain 1  score: -0.6 bits;  conditional E-value: 0.87
                 T--S-.EEE--SS-- CS
       LRR_8  47 gLpsLrsLdLsgNrL 61 
                 +L++L +Ld ++N++
  KOO21357.1 544 SLARLVFLDANRNHI 558
                 699**********98 PP

  == domain 2  score: 6.6 bits;  conditional E-value: 0.0048
                 -TT--EEE--SS-- CS
       LRR_8  24 lsnLkvLdLsnNll 37 
                 l nL++L+L +N++
  KOO21357.1 575 LANLQTLYLHSNRI 588
                 55666666666655 PP

  == domain 3  score: 4.4 bits;  conditional E-value: 0.024
                 TT--S-.EEE--SS- CS
       LRR_8  46 sgLpsLrsLdLsgNr 60 
                 + Lp+L+sLdL gN+
  KOO21357.1 710 AALPALKSLDLVGNQ 724
                 569999999999996 PP

>> IIGP  Interferon-inducible GTPase (IIGP)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   4.4e-05     0.061      38      61 ..      57      80 ..      45      97 .. 0.82

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 4.4e-05
                EEEEESTTSSHHHHHHHHTT--TT CS
        IIGP 38 iavtGdsGnGkssFinaLRliGhe 61
                ++v G++G+Gks+Fin L +   e
  KOO21357.1 57 VVVLGNTGAGKSAFINLLHGCTFE 80
                89***************9987655 PP

>> Dynamin_N  Dynamin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.1   0.00014      0.19       1      23 [.      57      79 ..      57      92 .. 0.88
   2 ?   -3.0   0.0       4.7   6.5e+03      98     135 ..     120     162 ..      95     171 .. 0.62
   3 ?   -3.2   0.0       5.6   7.7e+03      59      84 ..     437     462 ..     420     480 .. 0.68

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 0.00014
                EEEEEBTTTTHHHHHHHHHTS-- CS
   Dynamin_N  1 iavvGsqSsGKSSvlnaLlgedi 23
                ++v+G++ +GKS+++n L g  +
  KOO21357.1 57 VVVLGNTGAGKSAFINLLHGCTF 79
                79****************99766 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 4.7
                 TTS-SEEEEE---B-SSSGTTS.....HHHHHHHSTTEEEEEE CS
   Dynamin_N  98 llvkgltlvDlPGldsvnkrdq.....elvkeyikkadiilav 135
                  l +g  + D PG+ ++   +        vk++i  a+ +l+v
  KOO21357.1 120 SLGEGFAFADCPGFLDNRGFEInvanaVNVKQTISAAASVLVV 162
                 5566777788888876433333333324456666544444444 PP

  == domain 3  score: -3.2 bits;  conditional E-value: 5.6
                 T-EB--CHHHHHHHHHHHHHHHTSSS CS
   Dynamin_N  59 ekkledfsevreeieketekiagank 84 
                  +++  + evre+++++ e++a +++
  KOO21357.1 437 LTHFACIAEVREKLMRALEEAACQLE 462
                 67788888888888888888775444 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   0.00011      0.16      18      47 ..      53      82 ..      50     115 .. 0.84

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 0.00011
      AAA_23 18 skgltlItGpNGaGKTTildAiklaLyget 47
                +k  +++ G++GaGK+++++ ++ ++++ +
  KOO21357.1 53 GKRCVVVLGNTGAGKSAFINLLHGCTFELS 82
                5677899*******************9855 PP

>> Sigma54_activat  Sigma-54 interaction domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.2   0.1   0.00066      0.91      18      61 ..      50      95 ..      40     109 .. 0.70
   2 ?    0.1   0.0       0.4   5.6e+02     108     157 ..     445     496 ..     441     499 .. 0.79

  Alignments for each domain:
  == domain 1  score: 9.2 bits;  conditional E-value: 0.00066
                     HCTSSS-EEEECSTTSSHHHHHHHHHH..HSTTTTS-EEEEETTTS CS
  Sigma54_activat 18 vaktdlsvlitGesGtGKellaraihe..askrkekpfvavncaai 61
                      a  +  v+++G++G+GK+ + +++h    +  ++  +v    +a+
       KOO21357.1 50 HALGKRCVVVLGNTGAGKSAFINLLHGctFELSADDTMVVSRASAV 95
                     455567799*****************84333334444444444444 PP

  == domain 2  score: 0.1 bits;  conditional E-value: 0.4
                      HHHHHHHHHHHHSEEESBTSSS..EEE--EEEEEEESS-HHHHHHTTSS-HH CS
  Sigma54_activat 108 elQekLlrvlqegevervGssk..eikvdvriiaatnedleeaveegkfred 157
                      e+ ekL+r+l+e  ++  G+ k    ++  r++ a  ++l +av e+ + ed
       KOO21357.1 445 EVREKLMRALEEAACQLEGALKatAEEAGKRLVDAPVRELLRAVGENVVPED 496
                      6889**********99999754115778889999999999998887766665 PP

>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   0.00023      0.32      13      33 ..      56      76 ..      51      92 .. 0.90

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.00023
                EEEEEESTTSSHHHHHHHHTT CS
                xxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran 13 kvaivGenGaGKStLlkllag 33
                +v+++G++GaGKS +++ll g
  KOO21357.1 56 CVVVLGNTGAGKSAFINLLHG 76
                6899**************987 PP

>> AIG1  AIG1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.1   0.00025      0.35       3      40 ..      57      93 ..      55     103 .. 0.79

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.00025
                EEEESSTTSSHHHHHHHHHTS--SS--TTTS---SS-E CS
        AIG1  3 ivlvGktgnGkSaTgNsilgkkaFesklsaqsvtkkcq 40
                +v++G tg+GkSa +N +l    Fe ++ ++ v ++ +
  KOO21357.1 57 VVVLGNTGAGKSAFIN-LLHGCTFELSADDTMVVSRAS 93
                89*************9.566677888877777776655 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   0.00027      0.37      22      45 ..      53      75 ..      36     127 .. 0.79
   2 ?   -1.0   0.2       1.4   1.9e+03     136     141 ..     283     288 ..     217     369 .. 0.54
   3 ?   -1.4   0.5       1.9   2.6e+03      94     115 ..     454     475 ..     414     571 .. 0.61

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00027
      AAA_16 22 grpelvllsGesGvGKsslvrell 45
                g  ++v++ G+ G GKs+ ++ l+
  KOO21357.1 53 G-KRCVVVLGNTGAGKSAFINLLH 75
                2.29****************9887 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 1.4
      AAA_16 136 plvlvl 141
                 p  l+ 
  KOO21357.1 283 PSSLFQ 288
                 222222 PP

  == domain 3  score: -1.4 bits;  conditional E-value: 1.9
      AAA_16  94 leawrekleealaavpelagae 115
                 le+++ +le+al+a++e ag+ 
  KOO21357.1 454 LEEAACQLEGALKATAEEAGKR 475
                 3333333333333222222221 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (727 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       591  (0.0329634); expected 358.6 (0.02)
Passed bias filter:                      422  (0.0235373); expected 358.6 (0.02)
Passed Vit filter:                        73  (0.00407162); expected 17.9 (0.001)
Passed Fwd filter:                        13  (0.000725082); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 0.65u 0.30s 00:00:00.95 Elapsed: 00:00:00.45
# Mc/sec: 4868.16
//
Query:       KOO21358.1  [L=1428]
Description: nfx1-type zinc finger-containing protein 1-like protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    4.9e-20   72.4   0.7    9.1e-09   35.5   0.1    2.2  2  AAA_11         AAA domain
    2.5e-17   63.2   0.0    3.8e-17   62.6   0.0    1.3  1  AAA_12         AAA domain
    2.7e-05   23.9   0.0    4.5e-05   23.2   0.0    1.4  1  CSD            'Cold-shock' DNA-binding domain
     0.0001   22.1   1.1     0.0092   15.7   0.2    2.6  2  AAA_30         AAA domain
  ------ inclusion threshold ------
      0.015   15.6   0.0        2.6    8.4   0.0    2.5  2  AAA_19         AAA domain
      0.058   13.7   0.1        8.5    6.7   0.0    3.3  3  AAA_22         AAA domain
       0.17   11.5   2.5       0.73    9.4   0.2    2.6  2  AAA_25         AAA domain
        6.6    7.1  11.7        5.7    7.3   4.2    3.4  3  AAA_16         AAA ATPase domain
        6.9    6.0   6.9         17    4.7   6.9    1.6  1  CAP_N          Adenylate cyclase associated (CAP) N terminal


Domain annotation for each model (and alignments):
>> AAA_11  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.2   0.1   5.4e-12   1.1e-08       2     142 ..     675     803 ..     674     912 .. 0.72
   2 !   35.5   0.1   4.6e-12   9.1e-09     167     256 ..    1041    1130 ..    1019    1131 .. 0.86

  Alignments for each domain:
  == domain 1  score: 35.2 bits;  conditional E-value: 5.4e-12
      AAA_11   2 lndsqreaiksalseseitliqGPPGtgKTktivellsqllsrrkseeeksakpriLvCapSNaAvDellerllrglldsegekykpkivRvgneeeri 100
                 l++ q++a++++ls +  ++++G P tgK+ ++   l +ll  r  +e++ + p +LvC +SN+A D  l  ll+       +  ++ +vRvg+ +e  
  KOO21358.1 675 LDAPQKRALEHVLSAEL-SVLHGAPATGKSLVLQRALVALLHAR--KEAGLTAPVLLVC-SSNVALDMALGGLLD-------SAPELPLVRVGARSE-- 760
                 7899************6.************99988888884432..3555555555555.7**************.......99************5.. PP

      AAA_11 101 seavksvsleekvekrlekee.kaqlakeiskeleklakelra 142
                 s ++++  + +  +++ e+   + +  k+ +k++++l+++++ 
  KOO21358.1 761 SARMQPCEIGRLASAEAEHDAaHLKAWKSWTKQQAELRAQIER 803
                 7888888888888777766545333333333333333333322 PP

  == domain 2  score: 35.5 bits;  conditional E-value: 4.6e-12
      AAA_11  167 rrklkkerkelskeleeaeesleeevldeaeivltTlsgagsklleklakkfdvviIDEAaqavEpstliPlrlgakkvvLvGDpkQLpa 256 
                  +  l ++ ++  +e  + ++++   vl++a++v  T s  ++ +   +a + +vv++D Aa a+E  tli++     +++L GD +Q  +
  KOO21358.1 1041 LAGLCEQYERACREKLQLQQQMHLRVLRRARLVGMTRSAFTQYAPLVAALECQVVVVDDAAEALESHTLIAITPSLTHLILCGDRQQVHP 1130
                  55556666666677778899999***************998877666666*************************************766 PP

>> AAA_12  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.6   0.0   1.9e-20   3.8e-17      20     198 ..    1168    1354 ..    1143    1355 .. 0.72

  Alignments for each domain:
  == domain 1  score: 62.6 bits;  conditional E-value: 1.9e-20
      AAA_12   20 LdtqYRmhpeIsrfpsklfYkgkLkdaesvkkreleaqealeepleplvfidvekseeekekkeksyiNeeEaelvvklvekllkkgseeerkkigv 116 
                  L+ q+R   ++sr+ + l+   +   +++++  +++      +  e+ v++  +++ e+ e ++ s +N +Ea++++ +  +l+++g++   ++  v
  KOO21358.1 1168 LTLQHRLPAALSRLLRPLYPLAEAVGGATAAGPSSK---GGVKGVERAVYMLKHTKPESVEASSRSRCNVHEAKFCAAFALYLMRQGYAP--RQMTV 1259
                  666666666666665554444444444444444443...33334444444444445555555669*************************..9**** PP

      AAA_12  117 itpYraqvellkkklkekeeeksekeievntvdgfQGrekdviilslVRsn..............ekkeigflkderrlNValTRAkskliivGnk 198 
                  ++pY  q+ +++++l++       +++  + +d++ G+e+d+++lslVRs               +++ +g++ +e r+  al+RA+  l+++Gn+
  KOO21358.1 1260 LAPYCGQLLTVQRELRALGVP-GLEQVVTSLIDAYHGEENDIVLLSLVRSPpaalagavpgaekpPQGALGLVGSEPRMGAALSRARLGLYVIGNA 1354
                  ****************66655.5678999*********************5444445555555567779*************************97 PP

>> CSD  'Cold-shock' DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.2   0.0   2.3e-08   4.5e-05       3      64 ..      78     150 ..      76     152 .. 0.80

  Alignments for each domain:
  == domain 1  score: 23.2 bits;  conditional E-value: 2.3e-08
                 EEEEEEETTTTEEEEEETTSS....-EEEEETTTS-STT...TS--STSEEEEEEEE.....CSSCEEEEEEE CS
         CSD   3 GtVkwfnakkgfGFItredgd....kdvFvHvsaiqgdg..frsLqegqeVeFevve.....gkkgpeAanVt 64 
                 G V  + ++ +fGFI+++  +    +d+F+H+    + g  ++++  g  VeF vve     + ++++A+nV+
  KOO21358.1  78 GEVVSLRESDRFGFIQPDAASglprTDIFFHFATSLSPGtsMDQIYVGTLVEFHVVEdhsgkNGGKRRATNVR 150
                 7788899999*******997523227*****977665555699*************98886556678899997 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.2   4.6e-06    0.0092       2      55 ..     675     732 ..     674     807 .. 0.74
   2 ?    4.3   0.1     0.015        30      74     130 ..    1070    1130 ..    1048    1142 .. 0.65

  Alignments for each domain:
  == domain 1  score: 15.7 bits;  conditional E-value: 4.6e-06
      AAA_30   2 lnaeQaaavealltsgdrvavltGpAGtGKttalkal.reaweaag.....grviglApt 55 
                 l+a Q++a+e++l+ +  ++vl+G++ tGK+ +l+ + +++++a++      +v+++ ++
  KOO21358.1 675 LDAPQKRALEHVLSAE--LSVLHGAPATGKSLVLQRAlVALLHARKeagltAPVLLVCSS 732
                 7899*********999..9***************87747766666445565555554444 PP

  == domain 2  score: 4.3 bits;  conditional E-value: 0.015
      AAA_30   74 akllkrlk.......grarlepg.tllivDEagmvdtkqlaallkaaekagakvilvGDerQlas 130 
                  a+l+  ++         ++ + + ++++vD a+ +   + ++l+++  +  +++il+GD++Q  +
  KOO21358.1 1070 ARLVGMTRsaftqyaPLVA-ALEcQVVVVDDAAEA--LESHTLIAITPS-LTHLILCGDRQQVHP 1130
                  4444444455555543223.33449*****99865..444455555544.566*********865 PP

>> AAA_19  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.4   0.0    0.0013       2.6       1      52 [.     679     733 ..     679     744 .. 0.76
   2 ?    4.7   0.0     0.018        36      99     141 ..    1089    1128 ..     854    1132 .. 0.83

  Alignments for each domain:
  == domain 1  score: 8.4 bits;  conditional E-value: 0.0013
      AAA_19   1 qreave.alkekvllvtaGpGtGKTrvlkhivallvelggvkp..eeillvaftg 52 
                 q++a+e  l++++ ++ + p tGK+ vl+ ++  l+++++++   +++llv+  +
  KOO21358.1 679 QKRALEhVLSAELSVLHGAPATGKSLVLQRALVALLHARKEAGltAPVLLVCSSN 733
                 8899988999******************987665555544332236677776655 PP

  == domain 2  score: 4.7 bits;  conditional E-value: 0.018
      AAA_19   99 klqeeellivDEfqdvdelqyrLlkallgekkklllvGDpdQl 141 
                   l e+++++vD + +   l+ + l a++++ ++l+l GD++Q 
  KOO21358.1 1089 AL-ECQVVVVDDAAEA--LESHTLIAITPSLTHLILCGDRQQV 1128
                  45.7789999998765..444555556657788*********7 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.7   0.0    0.0043       8.5       6      33 ..     690     717 ..     686     744 .. 0.74
   2 ?    2.1   0.2      0.11   2.1e+02      52     117 ..    1036    1124 ..    1004    1130 .. 0.62
   3 ?   -0.7   0.0      0.82   1.6e+03      84     117 ..    1339    1372 ..    1335    1380 .. 0.77

  Alignments for each domain:
  == domain 1  score: 6.7 bits;  conditional E-value: 0.0043
      AAA_22   6 gilvvtGesGtGKTtllrrlleqldeea 33 
                  + v++G + tGK+++l+r l  l  + 
  KOO21358.1 690 ELSVLHGAPATGKSLVLQRALVALLHAR 717
                 6779*************99776664433 PP

  == domain 2  score: 2.1 bits;  conditional E-value: 0.11
      AAA_22   52 sskdllrellralglelka..........erlsseellealeqalrarav......ielliiDEaqh.lrs......eealeeLrslln 117 
                  +  + l  l++++++ + +          + l++ +l+ + + a+ ++a        +++++D+a   l s         l++L  + +
  KOO21358.1 1036 TMYERLAGLCEQYERACREklqlqqqmhlRVLRRARLVGMTRSAFTQYAPlvaaleCQVVVVDDAAEaLEShtliaiTPSLTHLILCGD 1124
                  66666777888888888887766666666333444444444444444444666688899****99886742345555555555555555 PP

  == domain 3  score: -0.7 bits;  conditional E-value: 0.82
      AAA_22   84 qalraravielliiDEaqhlr.seealeeLrslln 117 
                   al++++  +l +i +a+ l    +++e L + ln
  KOO21358.1 1339 AALSRARL-GLYVIGNAEALAaDSKLWEVLLRYLN 1372
                  57788888.9**********765777777766666 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   0.2   0.00037      0.73      22      65 ..     679     721 ..     667     731 .. 0.76
   2 ?    0.7   0.2      0.17   3.4e+02      71     155 ..    1024    1104 ..    1011    1107 .. 0.64

  Alignments for each domain:
  == domain 1  score: 9.4 bits;  conditional E-value: 0.00037
      AAA_25  22 rrwlvkgllpagelallaGapgtGKttlaldlalavatGkpwlg 65 
                 ++  ++ +l   el++l Gap+tGK+ ++    +a++  ++ +g
  KOO21358.1 679 QKRALEHVL-SAELSVLHGAPATGKSLVLQRALVALLHARKEAG 721
                 444455555.689****************999999997777666 PP

  == domain 2  score: 0.7 bits;  conditional E-value: 0.17
      AAA_25   71 qgkVlyvsaEdsedelrrRlravgealrddarllvldlagveslpLfakdrggtlltadvdaleaaieevegvrlvviDplsral 155 
                  q + l+++   +  ++ +Rl+ ++e++++  r+ +  l++++ l+++   r    + +++ + +  + +  + ++vv+D  ++al
  KOO21358.1 1024 QLAWLWLH--SKFGTMYERLAGLCEQYERACREKLQ-LQQQMHLRVLRRARLVGMTRSAFTQYAPLVAAL-ECQVVVVDDAAEAL 1104
                  55555555..34446778999999999554444333.344434444444444444778889999999995.59******998886 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.7   0.0     0.072   1.4e+02      41     130 ..     302     387 ..     300     400 .. 0.61
   2 ?    7.3   4.2    0.0028       5.7      15     132 ..     682     811 ..     678     903 .. 0.61
   3 ?   -2.1   0.1       2.1   4.2e+03     145     145 ..    1127    1127 ..    1048    1186 .. 0.45

  Alignments for each domain:
  == domain 1  score: 2.7 bits;  conditional E-value: 0.072
      AAA_16  41 vrellralekdg.giflrgkcdqlesaipysalaqalareellrqlldeaesaeleawrekleeala...avpelagaea.....srllellkrllall 130
                 +++l ++ ++   g+fl ++ ++l        + +++  e+l + l  +a  ++ +awre+++  +a   a   +++a+          ++ +rl+all
  KOO21358.1 302 LWQLTESPSRPVaGLFLPQEVTKL--------FPETF-HEDLKELLV-DAMVSKIPAWREAIDNPTAaaaA---AKRAAGggaaeAPAPAVTRRLVALL 387
                 556666666664477788888888........88999.535555555.55667***********9995541...3333334445533333333333433 PP

  == domain 2  score: 7.3 bits;  conditional E-value: 0.0028
      AAA_16  15 alervrsgrpelvllsGesGvGKsslvrellralekd..ggif...lrgkcdqlesaipysa....laqalareellrqlldeaesaeleawrekleea 104
                 ale v s   el +l+G++++GKs +++++l al  +  ++ +   +   c ++   +++++    l++ + +  l+r ++++   +e ++ +    ++
  KOO21358.1 682 ALEHVLSA--ELSVLHGAPATGKSLVLQRALVALLHArkEAGLtapVLLVCSSN---VALDMalggLLDSAPELPLVR-VGAR---SESARMQPCEIGR 771
                 56666655..6778*************777764444434244413444444444...444331001333332211111.1112...1222222222222 PP

      AAA_16 105 laavpelagaea.................srllellkrll.allsr 132
                 la+ +e     a                   l++++ rl+ + l++
  KOO21358.1 772 LAS-AE-----AehdaahlkawkswtkqqAELRAQIERLVaEDLAQ 811
                 221.11.....11111234555555555566666666666544444 PP

  == domain 3  score: -2.1 bits;  conditional E-value: 2.1
      AAA_16  145 q 145 
                  q
  KOO21358.1 1127 Q 1127
                  1 PP

>> CAP_N  Adenylate cyclase associated (CAP) N terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.7   6.9    0.0087        17     237     261 ..     496     522 ..     473     544 .. 0.52

  Alignments for each domain:
  == domain 1  score: 4.7 bits;  conditional E-value: 0.0087
                 C--XXXXXXX.......XXXXXXXX... CS
       CAP_N 237 aaasaaaagg.ppp..PpPpPppasvfe 261
                 +++++ ++g  p    PpPpPpp++++e
  KOO21358.1 496 PNSPEVHQGTlP-RgtPPPPPPPPPLPE 522
                 333333333311.123333333333322 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1428 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       541  (0.0301746); expected 358.6 (0.02)
Passed bias filter:                      349  (0.0194657); expected 358.6 (0.02)
Passed Vit filter:                        53  (0.0029561); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.84u 0.31s 00:00:01.14 Elapsed: 00:00:00.46
# Mc/sec: 9279.44
//
Query:       KOO21359.1  [L=135]
Description: hypothetical protein Ctob_003143 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (135 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       599  (0.0334096); expected 358.6 (0.02)
Passed bias filter:                      407  (0.0227007); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.39u 0.25s 00:00:00.64 Elapsed: 00:00:00.40
# Mc/sec: 1012.02
//
Query:       KOO21360.1  [L=436]
Description: delta-5 fatty acid desaturase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.1e-32  112.4  25.1    4.3e-32  111.9  25.1    1.2  1  FA_desaturase  Fatty acid desaturase
    2.2e-11   43.7   0.1    5.9e-11   42.4   0.0    1.8  2  Cyt-b5         Cytochrome b5-like Heme/Steroid binding domain
  ------ inclusion threshold ------
      0.093   10.7   0.0       0.13   10.2   0.0    1.1  1  TssR           Type VI secretion system, TssR


Domain annotation for each model (and alignments):
>> FA_desaturase  Fatty acid desaturase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  111.9  25.1   7.2e-36   4.3e-32       3     252 ..     154     405 ..     146     407 .. 0.76

  Alignments for each domain:
  == domain 1  score: 111.9 bits;  conditional E-value: 7.2e-36
  FA_desaturase   3 wlalllalllglfllgitgslaHeaaHgalfkkrklnrwlndllgallglplgisysawrisHlrHHaytngpdeDpdlaplal.........srf 89 
                    w+     l++g+  +g +g+l+He++H++l+++ k  r l+ ++    gl +g+s   wr +H++HH  + + ++Dpdl++l+l         +  
     KOO21360.1 154 WWTGM--LMMGIA-QGRCGWLQHEGGHYSLTGNIKIDRHLQMII---YGLGCGMSGCYWRNQHNKHHTTPQKLGADPDLQTLPLvafhkiigvKGS 243
                    55555..888998.99*9*************8888888887777...*********************************9999988777665333 PP

  FA_desaturase  90 eglfryllrlllgllvlgwllalvlglwlrrlarrrapsksrrrkwrllawlllllawlglwlalllllglalllwlvplllllfllalvlnyveH 185
                    +++ + ++ l++g + +     lv+++w      ++a++ +     +++a++ +l++ ++++ +l+  +g    l+++ l+++++++ +  + v+H
     KOO21360.1 244 KKWLMLQAPLFFGGVITT----LVAFVWQFVQHPNHAQRVGNYLELVWMALRYVLWHQAFGYMGLSRSAG----LYFAHLAVGATYIFTN-FAVSH 330
                    444444444444444444....333333333333333333332224444444444444444444444444....7777777777777777.***** PP

  FA_desaturase 186 yg.........gdwgerqvetsasirsaswllnlltgnlnyHieHHlfPgvpwyrLpelhrrlrellpehglpyrs 252
                    ++          +w +  + ++++++ +sw++n+++  ln++ieHHlfP++p y+ p++++r+++l+++hg+ y+ 
     KOO21360.1 331 THkdvipktkhISWTLYSANHTTNCT-SSWWCNWWMAYLNFQIEHHLFPAMPQYNHPKIQPRVMALFAKHGVEYDV 405
                    *********99999999999999999.*********************************************9986 PP

>> Cyt-b5  Cytochrome b5-like Heme/Steroid binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.4   0.0   9.8e-15   5.9e-11      16      67 ..      42      92 ..      33     139 .. 0.81
   2 ?   -4.0   0.0       2.9   1.7e+04      16      29 ..     396     409 ..     393     411 .. 0.73

  Alignments for each domain:
  == domain 1  score: 42.4 bits;  conditional E-value: 9.8e-15
                EEETTEEEECTTTCCCSTTCSHHHHTTTTSBBHHHHHHTTGGCHHHHHHHHG CS
      Cyt-b5 16 vairgkVYDvskflskhpGgesailkyaGkDateafksvvhsekdaekllkk 67
                ++i+g VYDvs f+++hpGg ++i    G+Da++a ++++ ++k+a+k+l++
  KOO21360.1 42 MIINGVVYDVSAFVKRHPGG-KVITYQLGSDASDAYNNFHLRSKKAAKMLAS 92
                68******************.99*****************777778888554 PP

  == domain 2  score: -4.0 bits;  conditional E-value: 2.9
                 EEETTEEEECTTTC CS
      Cyt-b5  16 vairgkVYDvskfl 29 
                 +a +g  YDv +++
  KOO21360.1 396 FAKHGVEYDVRSYW 409
                 55677779998887 PP

>> TssR  Type VI secretion system, TssR
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.0   2.2e-05      0.13     439     465 ..      62      88 ..      58      96 .. 0.88

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 2.2e-05
        TssR 439 rlLfiQlySdegdaynnFVlqaeelve 465
                 +++++Ql Sd +daynnF l +++  +
  KOO21360.1  62 KVITYQLGSDASDAYNNFHLRSKKAAK 88 
                 79******************9998655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (436 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       508  (0.028334); expected 358.6 (0.02)
Passed bias filter:                      313  (0.0174578); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.45u 0.27s 00:00:00.72 Elapsed: 00:00:00.40
# Mc/sec: 3256.87
//
Query:       KOO21361.1  [L=785]
Description: phospholipase group [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.1e-41  143.2   0.0    2.3e-41  142.2   0.0    1.5  1  Cupin_8       Cupin-like domain
    1.9e-09   36.9  27.2        0.5   10.6   0.6    8.3  8  TPR_2         Tetratricopeptide repeat
    3.4e-08   33.1   5.3      0.014   15.1   0.7    5.3  5  TPR_11        TPR repeat
    7.8e-08   31.8  10.5      0.035   14.0   0.5    5.6  6  TPR_1         Tetratricopeptide repeat
    0.00056   19.9   1.0        6.2    7.3   0.1    4.6  4  TPR_8         Tetratricopeptide repeat
     0.0031   17.8   1.3       0.21   12.0   0.2    3.5  3  TPR_17        Tetratricopeptide repeat
     0.0096   16.2   4.0     0.0096   16.2   4.0    5.9  5  TPR_12        Tetratricopeptide repeat
  ------ inclusion threshold ------
      0.021   15.5   2.3      0.021   15.5   2.3    6.1  4  TPR_16        Tetratricopeptide repeat
       0.03   14.8   0.0      0.066   13.6   0.0    1.6  1  JmjC          JmjC domain, hydroxylase
      0.055   12.2   0.0      0.091   11.5   0.0    1.3  1  Alginate_exp  Alginate export
      0.083   12.3   0.0        0.8    9.1   0.0    2.3  2  Cupin_4       Cupin superfamily protein
        3.5    7.9  17.8       0.24   11.5   0.3    5.3  6  TPR_7         Tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> Cupin_8  Cupin-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  142.2   0.0   1.6e-44   2.3e-41       6     251 ..     508     777 ..     503     779 .. 0.81

  Alignments for each domain:
  == domain 1  score: 142.2 bits;  conditional E-value: 1.6e-44
     Cupin_8   6 reyvakskPviikgalkd..wpalqkwtddeylleylkekaedvkvsvektpdgeadsf....keneelkfvkpeeeemtfkdfldelearrdtrsepy 98 
                 + +++ + Pv+++++ +d  ++   +w+  ++l +  +e++++v++s + + dg +d      +e+ + + v+p e+ m+++d+l  l+ +++      
  KOO21361.1 508 MALIKARAPVVLTNLQRDagFASGDAWS-AHQLAALAGERIVKVSISQSGRFDGSEDGSlwglSEG-QDVLVRPPETHMQLRDLLALLSLEEPPA---H 601
                 678999***********97666778899.4777777777788888887766666666556765544.44688999***************97555...7 PP

     Cupin_8  99 aylqnanlasefpelkedsdlpfateafgkkpeavnlWlGnsasvsslHkDhyeNlycvvrGrKkftLfpPsdapflyea..................s 179
                 +yl+ + l++++ +  ++ ++p++++a   +p  +nlWlG+ a++s lH+D yeNl+c+vrGrK+++LfpP+d p l  +                  +
  KOO21361.1 602 FYLEYNALHQYLGKPLRE-MVPCPPQASLLRPLLTNLWLGKGATTSPLHYDEYENLLCQVRGRKEILLFPPEDLPLLEYRarpkgvmryeypdrftrvP 699
                 ***********9998885.99999999999999********************************************5554444444444444555552 PP

     Cupin_8 180 lsptedgtv...........vssvdveepdlekfprlkdakkalevtlnaGevLylPalWfHeVksla....eeplhlavnywydms 251
                                       s+++  pd  ++  l+++ ++l++tl++Ge+L lPa W HeV+s+     +e+l++avn+w++++
  KOO21361.1 700 --------LsaearatkvlfAASINMTHPDRPRKRALEQC-SPLRCTLQPGETLLLPAYWHHEVYSHPaepdGEGLNVAVNFWFRNE 777
                 ........0233333344557789999*************.*************************999998888*********987 PP

>> TPR_2  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.7   0.0     0.025        38       8      33 ..      31      56 ..      31      57 .. 0.91
   2 !    8.5   0.3    0.0016       2.4       6      27 ..      63      84 ..      59      84 .. 0.94
   3 !    8.0   0.1    0.0023       3.4       1      33 [.     105     137 ..     105     138 .. 0.93
   4 ?    5.3   0.1     0.017        26       2      31 ..     144     173 ..     143     175 .. 0.93
   5 !   10.6   0.6   0.00033       0.5       9      30 ..     187     208 ..     183     209 .. 0.86
   6 ?    5.1   0.0     0.019        28       3      30 ..     220     247 ..     218     247 .. 0.90
   7 !    7.9   0.5    0.0025       3.8      18      33 ..     329     344 ..     328     345 .. 0.90
   8 ?   -0.4   0.2       1.2   1.7e+03      16      30 ..     374     388 ..     371     390 .. 0.87

  Alignments for each domain:
  == domain 1  score: 4.7 bits;  conditional E-value: 0.025
       TPR_2  8 GlayyklgdyeeAleafekAleldPn 33
                G a+++   + eA+e++++A +l P 
  KOO21361.1 31 GFAHLRERSLVEARELLRQAESLHPS 56
                78999999999*********999995 PP

  == domain 2  score: 8.5 bits;  conditional E-value: 0.0016
       TPR_2  6 nlGlayyklgdyeeAleafekA 27
                 +G ++++  +++ Al+a+e+A
  KOO21361.1 63 LRGHCAMADRNLDAALDAYEQA 84
                69*******************8 PP

  == domain 3  score: 8.0 bits;  conditional E-value: 0.0023
       TPR_2   1 aealynlGlayyklgdyeeAleafekAleldPn 33 
                 a+++++ G++ +++ +++eA   +e+A +l P 
  KOO21361.1 105 ADVHHAFGRLFRNQERWAEADVRYEAARKLLPS 137
                 6789999***********************996 PP

  == domain 4  score: 5.3 bits;  conditional E-value: 0.017
       TPR_2   2 ealynlGlayyklgdyeeAleafekAleld 31 
                 e+l+++G+ ++  + ++eA+ afe+ l+l 
  KOO21361.1 144 EGLFARGKRLLVDDAPAEAAVAFERGLALS 173
                 6899***********************985 PP

  == domain 5  score: 10.6 bits;  conditional E-value: 0.00033
       TPR_2   9 layyklgdyeeAleafekAlel 30 
                  a+   gd++ Ale++e+Al+l
  KOO21361.1 187 HAHGLCGDLDAALEHYEAALRL 208
                 566678**************98 PP

  == domain 6  score: 5.1 bits;  conditional E-value: 0.019
       TPR_2   3 alynlGlayyklgdyeeAleafekAlel 30 
                 +l  l+  ++kl d++ A +++++A  l
  KOO21361.1 220 LLSTLAVHHEKLHDLDAASRFLRAACNL 247
                 6889*******************99865 PP

  == domain 7  score: 7.9 bits;  conditional E-value: 0.0025
       TPR_2  18 eeAleafekAleldPn 33 
                 e A+++++kA+el P+
  KOO21361.1 329 EAAAAHYRKAIELHPR 344
                 78***********996 PP

  == domain 8  score: -0.4 bits;  conditional E-value: 1.2
       TPR_2  16 dyeeAleafekAlel 30 
                 + +eAl +++ A +l
  KOO21361.1 374 NTDEALSLLQTAASL 388
                 679********9988 PP

>> TPR_11  TPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.5   0.0      0.16   2.4e+02      12      35 ..      42      65 ..      39      67 .. 0.88
   2 ?    0.5   0.4      0.32   4.9e+02      10      20 ..      74      84 ..      73      85 .. 0.92
   3 ?    1.2   0.0       0.2     3e+02       1      26 [.     112     137 ..     112     139 .. 0.89
   4 !   10.3   0.0   0.00029      0.43       7      23 ..     192     208 ..     188     210 .. 0.93
   5 !   15.1   0.7   9.4e-06     0.014      10      35 ..     328     353 ..     328     358 .. 0.90

  Alignments for each domain:
  == domain 1  score: 1.5 bits;  conditional E-value: 0.16
      TPR_11 12 eAieaYkkAlkldPdnaeayynLG 35
                eA e +++A  l P+ +   + +G
  KOO21361.1 42 EARELLRQAESLHPSAPHTQLLRG 65
                899*************98888777 PP

  == domain 2  score: 0.5 bits;  conditional E-value: 0.32
      TPR_11 10 yeeAieaYkkA 20
                +++A+ aY++A
  KOO21361.1 74 LDAALDAYEQA 84
                89********9 PP

  == domain 3  score: 1.2 bits;  conditional E-value: 0.2
      TPR_11   1 GdayyeqGkyeeAieaYkkAlkldPd 26 
                 G++++ q ++ eA  +Y++A kl P+
  KOO21361.1 112 GRLFRNQERWAEADVRYEAARKLLPS 137
                 88999**************9888765 PP

  == domain 4  score: 10.3 bits;  conditional E-value: 0.00029
      TPR_11   7 qGkyeeAieaYkkAlkl 23 
                  G++++A+e+Y++Al+l
  KOO21361.1 192 CGDLDAALEHYEAALRL 208
                 69*************98 PP

  == domain 5  score: 15.1 bits;  conditional E-value: 9.4e-06
      TPR_11  10 yeeAieaYkkAlkldPdnaeayynLG 35 
                 +e+A ++Y+kA++l P  a ay +L+
  KOO21361.1 328 LEAAAAHYRKAIELHPRLAAAYDGLA 353
                 69********************8776 PP

>> TPR_1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.0       2.8   4.2e+03       9      33 ..      32      56 ..      27      56 .. 0.80
   2 !    9.8   0.2   0.00049      0.73       6      27 ..      63      84 ..      60      84 .. 0.94
   3 ?   -1.7   0.0         2     3e+03      18      30 ..     160     172 ..     159     174 .. 0.85
   4 !   14.0   0.5   2.3e-05     0.035       8      30 ..     186     208 ..     183     209 .. 0.92
   5 ?   -0.5   0.0      0.82   1.2e+03       4      27 ..     221     244 ..     218     247 .. 0.82
   6 !    9.3   0.3   0.00069         1      18      33 ..     329     344 ..     328     345 .. 0.90

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 2.8
                HHHHHTT-HHHHHHHHHHHHHHSTT CS
       TPR_1  9 nayfklgkydeAleyyekALelnPn 33
                 a+++   + eA e  ++A +l P+
  KOO21361.1 32 FAHLRERSLVEARELLRQAESLHPS 56
                56666667789********999885 PP

  == domain 2  score: 9.8 bits;  conditional E-value: 0.00049
                HHHHHHHHTT-HHHHHHHHHHH CS
       TPR_1  6 nlGnayfklgkydeAleyyekA 27
                 +G++ +   ++d Al++ye+A
  KOO21361.1 63 LRGHCAMADRNLDAALDAYEQA 84
                59*******************9 PP

  == domain 3  score: -1.7 bits;  conditional E-value: 2
                 HHHHHHHHHHHHH CS
       TPR_1  18 deAleyyekALel 30 
                  eA  ++e+ L l
  KOO21361.1 160 AEAAVAFERGLAL 172
                 69999****9987 PP

  == domain 4  score: 14.0 bits;  conditional E-value: 2.3e-05
                 HHHHHHTT-HHHHHHHHHHHHHH CS
       TPR_1   8 GnayfklgkydeAleyyekALel 30 
                 ++a+   g++d Ale+ye AL+l
  KOO21361.1 186 AHAHGLCGDLDAALEHYEAALRL 208
                 789999***************98 PP

  == domain 5  score: -0.5 bits;  conditional E-value: 0.82
                 HHHHHHHHHHTT-HHHHHHHHHHH CS
       TPR_1   4 lynlGnayfklgkydeAleyyekA 27 
                 l  l++ + kl ++d A  + + A
  KOO21361.1 221 LSTLAVHHEKLHDLDAASRFLRAA 244
                 66799999*********8877665 PP

  == domain 6  score: 9.3 bits;  conditional E-value: 0.00069
                 HHHHHHHHHHHHHSTT CS
       TPR_1  18 deAleyyekALelnPn 33 
                 + A ++y+kA+el P 
  KOO21361.1 329 EAAAAHYRKAIELHPR 344
                 89***********995 PP

>> TPR_8  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.5   0.0     0.071   1.1e+02       5      27 ..      62      84 ..      58      88 .. 0.88
   2 !    7.3   0.1    0.0042       6.2       8      30 ..     186     208 ..     183     209 .. 0.91
   3 ?   -1.5   0.0       2.7     4e+03      11      29 ..     228     246 ..     223     247 .. 0.84
   4 ?    3.6   0.1     0.066        98      18      31 ..     329     342 ..     328     344 .. 0.87

  Alignments for each domain:
  == domain 1  score: 3.5 bits;  conditional E-value: 0.071
                HHHHHHHHHTT-HHHHHHHHHHH CS
       TPR_8  5 ynlgsiylklgdyeeAkeyyeka 27
                ++ g++ +   ++++A  +ye+a
  KOO21361.1 62 LLRGHCAMADRNLDAALDAYEQA 84
                6789999999************9 PP

  == domain 2  score: 7.3 bits;  conditional E-value: 0.0042
                 HHHHHHTT-HHHHHHHHHHHHHH CS
       TPR_8   8 gsiylklgdyeeAkeyyekalel 30 
                 ++++   gd+++A e ye al+l
  KOO21361.1 186 AHAHGLCGDLDAALEHYEAALRL 208
                 6888889*************987 PP

  == domain 3  score: -1.5 bits;  conditional E-value: 2.7
                 HHHTT-HHHHHHHHHHHHH CS
       TPR_8  11 ylklgdyeeAkeyyekale 29 
                 ++kl d+++A  +++ a+ 
  KOO21361.1 228 HEKLHDLDAASRFLRAACN 246
                 578889********99986 PP

  == domain 4  score: 3.6 bits;  conditional E-value: 0.066
                 HHHHHHHHHHHHHH CS
       TPR_8  18 eeAkeyyekaleld 31 
                 e+A + y+ka+el 
  KOO21361.1 329 EAAAAHYRKAIELH 342
                 89**********95 PP

>> TPR_17  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.4   0.0      0.17   2.5e+02      12      32 ..     104     124 ..     100     125 .. 0.92
   2 !   12.0   0.2   0.00014      0.21       2      24 ..     335     357 ..     334     397 .. 0.89
   3 ?   -2.6   0.0       6.5   9.8e+03      12      22 ..     532     542 ..     530     545 .. 0.84

  Alignments for each domain:
  == domain 1  score: 2.4 bits;  conditional E-value: 0.17
      TPR_17  12 nadaynnLAelllknGdlmtA 32 
                 +ad+++  ++l++++ ++++A
  KOO21361.1 104 SADVHHAFGRLFRNQERWAEA 124
                 79**************99988 PP

  == domain 2  score: 12.0 bits;  conditional E-value: 0.00014
      TPR_17   2 ylkaleldPnnadaynnLAelll 24 
                 y+ka+el+P  a ay  LA+lll
  KOO21361.1 335 YRKAIELHPRLAAAYDGLATLLL 357
                 9********************98 PP

  == domain 3  score: -2.6 bits;  conditional E-value: 6.5
      TPR_17  12 nadaynnLAel 22 
                 +a++ ++LA l
  KOO21361.1 532 DAWSAHQLAAL 542
                 89999999976 PP

>> TPR_12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.9   1.8     0.091   1.4e+02       5      29 ..      60      84 ..      31      86 .. 0.61
   2 ?    3.5   4.0     0.059        88       6      75 ..      61     135 ..      56     137 .. 0.73
   3 !   16.2   4.0   6.4e-06    0.0096      10      74 ..     186     247 ..     182     250 .. 0.90
   4 ?    4.9   1.3     0.021        31      26      60 ..     328     361 ..     327     363 .. 0.81
   5 ?    1.4   1.4      0.26   3.9e+02      18      36 ..     374     392 ..     370     405 .. 0.74

  Alignments for each domain:
  == domain 1  score: 2.9 bits;  conditional E-value: 0.091
      TPR_12  5 alnnlaavlrrlgrydeAlelleka 29
                ++  ++++ ++  ++d Al+ +e+a
  KOO21361.1 60 TQLLRGHCAMADRNLDAALDAYEQA 84
                3334555555555555555555554 PP

  == domain 2  score: 3.5 bits;  conditional E-value: 0.059
      TPR_12   6 lnnlaavlrrlgrydeAlelleka....leiarrllGpdh.pltattlrnLgrlyralgryeeAlelleealaia 75 
                 +  ++++ ++  ++d Al+ +e+a      +++ + +++   + a + ++ grl+r ++r++eA  ++e a +++
  KOO21361.1  61 QLLRGHCAMADRNLDAALDAYEQAdqstFKLRTTASDEQAcTASADVHHAFGRLFRNQERWAEADVRYEAARKLL 135
                 556888999999999999999987666655663333333337788889999999999999999999888888775 PP

  == domain 3  score: 16.2 bits;  conditional E-value: 6.4e-06
      TPR_12  10 aavlrrlgrydeAlellekaleiarrllGpdhpltattlrnLgrlyralgryeeAlelleealai 74 
                 a+++   g++d Ale++e+al+++ +l  p + ++ + l +L+  +++l ++++A ++l+ a ++
  KOO21361.1 186 AHAHGLCGDLDAALEHYEAALRLH-AL--PSRSQLPSLLSTLAVHHEKLHDLDAASRFLRAACNL 247
                 5666678*****************.78..77889**************************99876 PP

  == domain 4  score: 4.9 bits;  conditional E-value: 0.021
      TPR_12  26 lekaleiarrllGpdhpltattlrnLgrlyralgr 60 
                 le+a + +r++  + hp +a+++ +L++l++ + r
  KOO21361.1 328 LEAAAAHYRKAI-ELHPRLAAAYDGLATLLLGTSR 361
                 577888888886.569************9987766 PP

  == domain 5  score: 1.4 bits;  conditional E-value: 0.26
      TPR_12  18 rydeAlellekaleiarrl 36 
                 + deAl+ll++a  +a ++
  KOO21361.1 374 NTDEALSLLQTAASLAASA 392
                 6799*******99999665 PP

>> TPR_16  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.5   2.3   1.4e-05     0.021       8      60 ..      35      84 ..      33      89 .. 0.89
   2 ?    0.5   5.3      0.65   9.7e+02       2      54 ..     110     163 ..     109     176 .. 0.67
   3 ?    7.9   0.7    0.0033       4.9      11      53 ..     193     237 ..     192     247 .. 0.69
   4 ?   -1.2  13.1       2.3   3.5e+03      14      52 ..     329     364 ..     327     406 .. 0.94

  Alignments for each domain:
  == domain 1  score: 15.5 bits;  conditional E-value: 1.4e-05
      TPR_16  8 lragdyddAaaaleaalkrdpssPdaaeAllllgdaalrqgrlaeAaalyraa 60
                lr +   +A+++l++a  ++   P a++ +ll+g +a +  +l++A+++y+ a
  KOO21361.1 35 LRERSLVEARELLRQAESLH---PSAPHTQLLRGHCAMADRNLDAALDAYEQA 84
                66666779************...************************999887 PP

  == domain 2  score: 0.5 bits;  conditional E-value: 0.65
      TPR_16   2 alaraalragdyddAaaaleaalkrdpssPdaaeAllllgdaalrq.....grlaeAa 54 
                 a +r+++++ ++++A  ++eaa+k+    P    Al + g+ a  +        aeAa
  KOO21361.1 110 AFGRLFRNQERWAEADVRYEAARKLL---P-SSMALEEEGLFARGKrllvdDAPAEAA 163
                 67999********************9...6.455555555555544122115555555 PP

  == domain 3  score: 7.9 bits;  conditional E-value: 0.0033
      TPR_16  11 gdyddAaaaleaalkrdpssPd..aaeAllllgdaalrqgrlaeA 53 
                 gd d+A++ +eaal++++ +++   +  l  l++ + ++ +l++A
  KOO21361.1 193 GDLDAALEHYEAALRLHALPSRsqLPSLLSTLAVHHEKLHDLDAA 237
                 899**************8777655555555555555555555555 PP

  == domain 4  score: -1.2 bits;  conditional E-value: 2.3
      TPR_16  14 ddAaaaleaalkrdpssPdaaeAllllgdaalrqgrlae 52 
                 ++Aaa ++ a++++   P+ a+A+ +l+ ++l  +rla 
  KOO21361.1 329 EAAAAHYRKAIELH---PRLAAAYDGLATLLLGTSRLAN 364
                 89************...***************9999985 PP

>> JmjC  JmjC domain, hydroxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.0   4.4e-05     0.066      38     104 ..     688     757 ..     679     772 .. 0.74

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 4.4e-05
                 -GGGHHHHHHHHHHHHHCCSTTGCCTTTCEE-HHH...HHHTT---EEEEE-TT-EEEE-TT-EEEEEES CS
        JmjC  38 peekkeklekvlskknskeqpdllrhkstlispkq...lekegipvyrfvqkpgefVfvfpgayHsvfnl 104
                  +e+++++ +v    +++ ++ l     ++ +p++      e+  + r++ +pge++  +++++H v ++
  KOO21361.1 688 RYEYPDRFTRVPLSAEARATKVLFAASINMTHPDRprkRALEQCSPLRCTLQPGETLLLPAYWHHEVYSH 757
                 5677777777777776666666677778888888866544467899*********************987 PP

>> Alginate_exp  Alginate export
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   6.1e-05     0.091     207     268 ..     125     190 ..      82     202 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 6.1e-05
                   EEEEEESTT-..SSEEEEEEEEEEEEEE.EEEETTEEEEEEEEEEEEE...E-SSSEEEEEEEEEE CS
  Alginate_exp 207 glraagkakn..trldydlelmyqtGrv.gttvarawnavaaelGytf.klpwkPrlslgydyASG 268
                   ++r+    k     +  + e+ + +G++  +++a a  ava e G+ + ++pw P ++l+ ++A G
    KOO21361.1 125 DVRYEAARKLlpSSMALEEEGLFARGKRlLVDDAPAEAAVAFERGLALsSAPWRPHFALQCAHAHG 190
                   55544444334477778889999999999555555556**************************88 PP

>> Cupin_4  Cupin superfamily protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.1   0.0   0.00053       0.8     117     146 ..     636     664 ..     628     674 .. 0.88
   2 ?   -0.2   0.0      0.37   5.5e+02     179     208 ..     737     771 ..     721     778 .. 0.73

  Alignments for each domain:
  == domain 1  score: 9.1 bits;  conditional E-value: 0.00053
                 EEEEE-TTBBSS-SEE-SSEEEEEEEEC-E CS
     Cupin_4 117 nvYatpggsqgvgpHyDdyDVfllQleGrk 146
                 n+++ +g  ++ + HyD+y+ +l Q+ Grk
  KOO21361.1 636 NLWLGKGA-TTSPLHYDEYENLLCQVRGRK 664
                 67777777.78899***************9 PP

  == domain 2  score: -0.2 bits;  conditional E-value: 0.37
                 EE-TT-EEEE-TT-EEEEEBBT.....-CCEEEEE CS
     Cupin_4 179 vLepGDlLYlPrgviHqgvaed.....esltlSvg 208
                  L+pG  L lP  + H+ +++      e+l+++v 
  KOO21361.1 737 TLQPGETLLLPAYWHHEVYSHPaepdgEGLNVAVN 771
                 799********999988665422222366666665 PP

>> TPR_7  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.4   0.1      0.55   8.3e+02       8      24 ..      67      83 ..      62      99 .. 0.79
   2 ?    3.8   0.1     0.048        72       6      24 ..     112     130 ..     107     146 .. 0.80
   3 ?   11.5   0.3   0.00016      0.24       4      29 ..     184     209 ..     181     217 .. 0.84
   4 ?   -1.9   0.1       3.1   4.7e+03       2      24 ..     221     243 ..     220     244 .. 0.83
   5 ?    0.6   0.2      0.48   7.2e+02      14      22 ..     334     342 ..     329     351 .. 0.59
   6 ?   -2.3   0.1       4.1   6.2e+03      14      26 ..     374     386 ..     374     393 .. 0.75

  Alignments for each domain:
  == domain 1  score: 0.4 bits;  conditional E-value: 0.55
       TPR_7  8 lysrlGdyeeAielyeq 24
                +  ++++ + A++ yeq
  KOO21361.1 67 CAMADRNLDAALDAYEQ 83
                55668999********* PP

  == domain 2  score: 3.8 bits;  conditional E-value: 0.048
       TPR_7   6 arlysrlGdyeeAielyeq 24 
                 +rl++++ +++eA   ye+
  KOO21361.1 112 GRLFRNQERWAEADVRYEA 130
                 9************999998 PP

  == domain 3  score: 11.5 bits;  conditional E-value: 0.00016
       TPR_7   4 nLarlysrlGdyeeAielyeqsLalt 29 
                 + a+++  +Gd + A+e+ye++L+l+
  KOO21361.1 184 QCAHAHGLCGDLDAALEHYEAALRLH 209
                 56788888*************99887 PP

  == domain 4  score: -1.9 bits;  conditional E-value: 3.1
       TPR_7   2 LlnLarlysrlGdyeeAielyeq 24 
                 L+ La+ +++l d + A +++++
  KOO21361.1 221 LSTLAVHHEKLHDLDAASRFLRA 243
                 6789999**99999999888776 PP

  == domain 5  score: 0.6 bits;  conditional E-value: 0.48
       TPR_7  14 dyeeAiely 22 
                 +y++Aiel+
  KOO21361.1 334 HYRKAIELH 342
                 455666655 PP

  == domain 6  score: -2.3 bits;  conditional E-value: 4.1
       TPR_7  14 dyeeAielyeqsL 26 
                 +++eA++l++ + 
  KOO21361.1 374 NTDEALSLLQTAA 386
                 5899***999854 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (785 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       562  (0.0313459); expected 358.6 (0.02)
Passed bias filter:                      328  (0.0182944); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                        17  (0.000948185); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.64u 0.27s 00:00:00.91 Elapsed: 00:00:00.45
# Mc/sec: 5254.00
//
Query:       KOO21362.1  [L=820]
Description: ABC transporter b family member 4-like protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.2e-46  157.8   0.0    1.8e-28   99.7   0.0    2.7  2  ABC_tran      ABC transporter
    1.6e-21   77.2   4.9    2.9e-21   76.3   4.9    1.3  1  ABC_membrane  ABC transporter transmembrane region
    1.5e-05   24.5   3.0       0.03   13.8   0.0    4.1  4  SMC_N         RecF/RecN/SMC N terminal domain
    1.8e-05   25.2   4.4      0.045   14.1   0.2    3.4  3  AAA_16        AAA ATPase domain
    1.9e-05   24.3   4.5       0.04   13.7   0.1    3.1  3  AAA_29        P-loop containing region of AAA domain
    5.5e-05   23.0   0.0       0.14   11.9   0.0    2.4  2  AAA_24        AAA domain
    8.5e-05   22.8   1.2       0.17   12.0   0.1    2.7  2  DUF87         Helicase HerA, central domain
     0.0002   20.7   1.6       0.34   10.2   0.0    3.1  3  Zeta_toxin    Zeta toxin
    0.00024   20.8   1.6       0.55    9.8   0.6    2.9  3  AAA_25        AAA domain
    0.00055   20.0   0.3       0.32   11.1   0.0    2.8  2  MMR_HSR1      50S ribosome-binding GTPase
    0.00078   19.7   0.9        5.6    7.2   0.4    3.5  3  AAA_22        AAA domain
    0.00094   19.7   0.5        1.7    9.2   0.1    2.5  2  AAA_18        AAA domain
     0.0015   17.6   0.4       0.23   10.4   0.1    2.4  2  MeaB          Methylmalonyl Co-A mutase-associated GTPase Mea
     0.0033   17.3   1.3        1.3    8.9   0.2    2.5  2  RsgA_GTPase   RsgA GTPase
     0.0085   16.3   3.1        2.5    8.2   0.0    2.7  2  AAA_33        AAA domain
     0.0086   15.3   1.2        3.4    6.8   0.1    2.8  3  NB-ARC        NB-ARC domain
     0.0097   15.8   0.6        5.1    7.0   0.1    2.5  2  APS_kinase    Adenylylsulphate kinase
  ------ inclusion threshold ------
      0.015   15.7   2.6        3.6    8.0   1.4    3.5  2  AAA_17        AAA domain
      0.019   14.9   0.2        2.2    8.2   0.1    2.5  2  NTPase_1      NTPase
      0.021   14.2   0.1        6.7    6.0   0.0    2.7  2  FtsK_SpoIIIE  FtsK/SpoIIIE family
      0.031   14.3   0.6         20    5.2   0.1    3.3  3  AAA_5         AAA domain (dynein-related subfamily)
      0.032   14.1   0.8        6.1    6.5   0.0    3.1  3  AAA_21        AAA domain, putative AbiEii toxin, Type IV TA s
      0.048   13.4   0.2        6.4    6.5   0.0    2.3  2  PRK           Phosphoribulokinase / Uridine kinase family
      0.049   13.3   0.1         11    5.6   0.0    2.4  2  ATP-synt_ab   ATP synthase alpha/beta family, nucleotide-bind
      0.051   13.3   0.0        3.1    7.5   0.0    2.6  2  IstB_IS21     IstB-like ATP binding protein
      0.072   13.1   0.3         13    5.8   0.0    2.5  2  CbiA          CobQ/CobB/MinD/ParA nucleotide binding domain
      0.076   12.8   0.8        3.5    7.3   0.1    2.4  2  ATP_bind_1    Conserved hypothetical ATP binding protein
      0.081   13.6   0.0       0.36   11.5   0.0    2.1  1  DUF2809       Protein of unknown function (DUF2809)
      0.091   13.0   0.3        3.5    7.9   0.1    2.5  2  Roc           Ras of Complex, Roc, domain of DAPkinase
       0.13   12.1   1.6         17    5.3   0.1    2.6  2  NACHT         NACHT domain
       0.15   12.3   0.6       0.89    9.8   0.6    2.3  1  SbcCD_C       Putative exonuclease SbcCD, C subunit
       0.16   11.1   0.6         19    4.3   0.1    2.8  3  DUF815        Protein of unknown function (DUF815)
       0.16   11.4   0.0         16    5.0   0.0    2.4  2  AAA_7         P-loop containing dynein motor region
       0.33   11.2   2.3        6.3    7.1   0.1    2.7  2  MoaE          MoaE protein
        2.2    8.5   8.0         21    5.3   1.1    3.7  4  AAA_28        AAA domain


Domain annotation for each model (and alignments):
>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.1   0.0   2.2e-17   1.1e-14       2      99 ..     127     261 ..     126     284 .. 0.79
   2 !   99.7   0.0   3.6e-31   1.8e-28       1     137 []     499     728 ..     499     728 .. 0.89

  Alignments for each domain:
  == domain 1  score: 55.1 bits;  conditional E-value: 2.2e-17
                 EEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--...SEEEEEETTCEGGGB-HHHCCHCEEEE-SS--S-TTSBHHHH.................. CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.................. RF
    ABC_tran   2 knvslklkegekvaivGenGaGKStLlkllagllkp...teGeilldgkdlkeqeleslrkeigvlpqepqlfpeltvren.................. 79 
                 +  sl++ +ge+v+ivG +G+GKStL+ l ++ ++    ++G++++dg d+++   +slrk++g ++qep lf  + ++en                  
  KOO21362.1 127 RGFSLDVAAGERVGIVGTSGSGKSTLVLLAMRAYELntsKSGSVTVDGVDTRQWHVQSLRKQLGLVQQEPILFGLS-IAENialgvadrlasevtraei 224
                 6789***********************9999988877779*****************************9999988.99999*****999998766666 PP

                 .................HHHTCHHHHHHHSTTGGTTC CS
                 .................xxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  80 .................esdeeiekalsklglkelkd 99 
                                   +++ +++al+++  ++ ++
  KOO21362.1 225 eaaakkanahefildaaRRERVVQHALDTMTKEDAAT 261
                 6666555555555544333333555555555555444 PP

  == domain 2  score: 99.7 bits;  conditional E-value: 3.6e-31
                 EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGGB-HHHCCHCEEEE-SS--S-TTSBHHHH.................... CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.................... RF
    ABC_tran   1 lknvslklkegekvaivGenGaGKStLlkllagllkpteGeilldgkdlkeqeleslrkeigvlpqepqlfpeltvren.................... 79 
                 l+n s+ +++g+ v++vG +G+GKStL+ l+ + ++ +eG +l+dg d++e + + lr+ ig ++qep lf ++ ++ n                    
  KOO21362.1 499 LSNFSFVIEAGQYVGVVGASGSGKSTLALLIGRVYDVDEGAVLVDGIDVREWNVRALRSLIGLVQQEPALFADS-IAYNigygtpsaekpvegqgvlpl 596
                 6899**********************************************************************.77777******************* PP

                 ............................................................................HHHTCHHHHHHHSTTGGTTCBGE CS
                 ............................................................................xxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  80 ............................................................................esdeeiekalsklglkelkdtvv 102
                                                                                             ++ ++++++++++  ++  +t +
  KOO21362.1 597 etggsegmatdaaeagaslhnntsavgegkvspqtsdqtkstspaegkprskakkavvaqavemtfapppdeivnaAKMANAATFIDTFPATY--ATFC 693
                 **********************************99999999999999977777766666666666665555554444444555555555555..9999 PP

                 STTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran 103 ksspssLSgGqkqrvalarallkkpkllllDEpta 137
                 ++++s+LSgGqkqrva+aral ++p +lllDE+ta
  KOO21362.1 694 GTRGSQLSGGQKQRVAIARALYRAPAILLLDEATA 728
                 9999*****************************96 PP

>> ABC_membrane  ABC transporter transmembrane region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   76.3   4.9   5.6e-24   2.9e-21     133     271 ..     284     420 ..     275     422 .. 0.97

  Alignments for each domain:
  == domain 1  score: 76.3 bits;  conditional E-value: 5.6e-24
                   HHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
  ABC_membrane 133 livmfylgwkltlvllailpliilvsaviakilkklkkkeqkavakassvaeEslsgirtVkafgreeyflekfekaleeakkagikkaiangllig 229
                   +i++f+ +w+++lvl++++pl+il  ++  k    ++k  +k++++as+v+ Es+s+ rtV afg +++ ++ + +al++ +++  +++++ ++ ++
    KOO21362.1 284 VIIAFVNSWRFALVLMSVYPLLILGGIFEFKSYAGIEKLGNKKLEDASTVLSESISASRTVAAFGLQPRSTTMYREALRSLRSKEAWAIFSVAFGQS 380
                   799********************************************************************************************** PP

                   HHHHHHHHHHHHHHHHHHHHHHTTSSTHHHHHHHHHHHHHHH CS
  ABC_membrane 230 itqllgllsyalalwfGttlvisgelsvgdlvvflslfailf 271
                   + +++  + y +a+++G+ ++ +g l++++   +++++a+ +
    KOO21362.1 381 FERAVLQCTYGIAFLVGARFIREGFLTFSQ--LLNTFLAVTL 420
                   ******************************..9999998654 PP

>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.2   0.0     0.097        50      28      41 ..     140     153 ..     131     167 .. 0.87
   2 ?    1.9   0.2      0.26   1.3e+02     171     211 ..     238     281 ..     233     286 .. 0.77
   3 ?    2.3   0.4      0.18        94      26      40 ..     511     525 ..     500     533 .. 0.86
   4 !   13.8   0.0   5.8e-05      0.03     135     184 ..     665     743 ..     528     783 .. 0.70

  Alignments for each domain:
  == domain 1  score: 3.2 bits;  conditional E-value: 0.097
                 EEEESTTSSHHHHH CS
                 xxxxxxxxxxxxxx RF
       SMC_N  28 aivGpNGSGKsnll 41 
                  ivG  GSGKs l+
  KOO21362.1 140 GIVGTSGSGKSTLV 153
                 69*********975 PP

  == domain 2  score: 1.9 bits;  conditional E-value: 0.26
                 S-HHHHHHHHH.HHHHHCTT..SEEEEE-SSHHHCCC-SCEEEE CS
                 xxxxxxxxxxx.xxxxxxxx..xxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N 171 LDeknvkkvae.llkekskn..aQfivislreemlekadklvgv 211
                 LD++++++v++  l++ +k+  a  +vi++r  +l++++++v +
  KOO21362.1 238 LDAARRERVVQhALDTMTKEdaATTLVIAHRLSTLANMNRIVVM 281
                 8999999887625664444444999**************99866 PP

  == domain 3  score: 2.3 bits;  conditional E-value: 0.18
                 EEEEEESTTSSHHHH CS
                 xxxxxxxxxxxxxxx RF
       SMC_N  26 ftaivGpNGSGKsnl 40 
                    +vG+ GSGKs l
  KOO21362.1 511 YVGVVGASGSGKSTL 525
                 5679*********87 PP

  == domain 4  score: 13.8 bits;  conditional E-value: 5.8e-05
                 T.................................CS-HHHHHHHHHHHHHHHHCCS--SEEEECTTTTTS-HHHHHHHHHHHH CS
                 x.................................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N 135 e.................................lLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvkkvaellk 184
                                                   +LSgG+k+ va+a       ++  ++ llDe  aaLD k  + v e l+
  KOO21362.1 665 PpdeivnaakmanaatfidtfpatyatfcgtrgsQLSGGQKQRVAIARA----LYRAPAILLLDEATAALDTKSEAVVQEALD 743
                 05555555555555555555555555555556659*******9998754....6888899************99888877765 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.1   0.2   8.8e-05     0.045      25      91 ..     137     221 ..     126     281 .. 0.44
   2 !   10.5   0.0    0.0011      0.58      25      58 ..     510     543 ..     498     639 .. 0.78
   3 ?   -0.4   0.0       2.7   1.4e+03      71     127 ..     709     771 ..     646     797 .. 0.60

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 8.8e-05
      AAA_16  25 elvllsGesGvGKsslvrellralekd............ggiflrgkcdql........esa.ipy.salaqalareellrqlldeaes 91 
                 e v ++G sG+GKs+lv  ++ra+e +            +   +r++ +q+        +++ i + + +a+ +a  ++   l++e + 
  KOO21362.1 137 ERVGIVGTSGSGKSTLVLLAMRAYELNtsksgsvtvdgvD---TRQWHVQSlrkqlglvQQEpILFgLSIAENIAL-GVADRLASEVTR 221
                 567799***********99999777776676444432220...333333331110011111112221112222211.222222222111 PP

  == domain 2  score: 10.5 bits;  conditional E-value: 0.0011
      AAA_16  25 elvllsGesGvGKsslvrellralekdggiflrg 58 
                 ++v ++G+sG+GKs+l+  + r +  d+g +l  
  KOO21362.1 510 QYVGVVGASGSGKSTLALLIGRVYDVDEGAVLVD 543
                 6888************988877666665555444 PP

  == domain 3  score: -0.4 bits;  conditional E-value: 2.7
      AAA_16  71 alaqalareellrqllde......aesaeleawrekleealaavpelagaeasrllellkrll 127
                 a+a+al r   +  l+++      +++a ++++ +++ e+ + +++ + a+++r    +++ l
  KOO21362.1 709 AIARALYRAPAILLLDEAtaaldtKSEAVVQEALDRIIEEGRRTKPGETAKPTRTTVCIAHRL 771
                 344444442222222222333222222233333333333333444444444455555555555 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.7   0.1   7.8e-05      0.04      24      39 ..     138     153 ..     126     164 .. 0.81
   2 ?   -1.6   0.1       4.6   2.4e+03      21      33 ..     459     472 ..     450     477 .. 0.74
   3 !   10.8   0.1   0.00059       0.3      24      38 ..     511     525 ..     500     528 .. 0.82

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 7.8e-05
      AAA_29  24 atlltGpsGsGKSTll 39 
                  + ++G+sGsGKSTl+
  KOO21362.1 138 RVGIVGTSGSGKSTLV 153
                 6779**********97 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 4.6
      AAA_29  21 lkg.atlltGpsGs 33 
                 + + a l+ G+sGs
  KOO21362.1 459 PLSeAGLVCGQSGS 472
                 444478*******8 PP

  == domain 3  score: 10.8 bits;  conditional E-value: 0.00059
      AAA_29  24 atlltGpsGsGKSTl 38 
                  + ++G+sGsGKSTl
  KOO21362.1 511 YVGVVGASGSGKSTL 525
                 56689*********8 PP

>> AAA_24  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.9   0.0   0.00027      0.14       3      46 ..     137     180 ..     135     257 .. 0.79
   2 !    8.8   0.0    0.0024       1.2       5      44 ..     512     548 ..     508     574 .. 0.76

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 0.00027
      AAA_24   3 lkiliyGpsgiGKTtlakelgpkplfidtek.Glksldadkfpdi 46 
                  ++ i+G sg+GK+tl++ +  ++  ++t k G+  +d+ +  + 
  KOO21362.1 137 ERVGIVGTSGSGKSTLVLLA-MRAYELNTSKsGSVTVDGVDTRQW 180
                 5899****************.*********977766666665433 PP

  == domain 2  score: 8.8 bits;  conditional E-value: 0.0024
      AAA_24   5 iliyGpsgiGKTtlakelgpkplfidtekGlksldadkfp 44 
                 + ++G sg+GK+tla+ +  +  + d+++G+  +d++++ 
  KOO21362.1 512 VGVVGASGSGKSTLALLI-GR--VYDVDEGAVLVDGIDVR 548
                 7899************99.54..67888888776666654 PP

>> DUF87  Helicase HerA, central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.0   0.1   0.00033      0.17      21      41 ..     134     154 ..     122     172 .. 0.78
   2 !    8.8   0.1    0.0031       1.6      26      47 ..     512     532 ..     507     543 .. 0.75

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 0.00033
       DUF87  21 lvtrHlAilgsTGsGKSntva 41 
                 +  ++++i+g++GsGKS++v 
  KOO21362.1 134 AAGERVGIVGTSGSGKSTLVL 154
                 56789*************984 PP

  == domain 2  score: 8.8 bits;  conditional E-value: 0.0031
       DUF87  26 lAilgsTGsGKSntvavLleel 47 
                 ++++g +GsGKS+++ +L+ ++
  KOO21362.1 512 VGVVGASGSGKSTLA-LLIGRV 532
                 79**********986.555555 PP

>> Zeta_toxin  Zeta toxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.6   0.0    0.0041       2.1      21      58 ..     141     181 ..     138     191 .. 0.87
   2 !   10.2   0.0   0.00065      0.34      21      56 ..     514     549 ..     508     557 .. 0.91
   3 ?   -0.5   0.1       1.3   6.4e+02     129     187 ..     730     785 ..     726     790 .. 0.85

  Alignments for each domain:
  == domain 1  score: 7.6 bits;  conditional E-value: 0.0041
  Zeta_toxin  21 lgGqpGAGKselaellkdele...rqgnvvrldpDdlRelh 58 
                 ++G +G+GKs+l  l+ ++ e   ++++ v++d+ d R+ h
  KOO21362.1 141 IVGTSGSGKSTLVLLAMRAYElntSKSGSVTVDGVDTRQWH 181
                 689*********9999888877789999******9999998 PP

  == domain 2  score: 10.2 bits;  conditional E-value: 0.00065
  Zeta_toxin  21 lgGqpGAGKselaellkdelerqgnvvrldpDdlRe 56 
                 ++G++G+GKs+la l+ +  + ++++v +d+ d+Re
  KOO21362.1 514 VVGASGSGKSTLALLIGRVYDVDEGAVLVDGIDVRE 549
                 78****************************999998 PP

  == domain 3  score: -0.5 bits;  conditional E-value: 1.3
  Zeta_toxin 129 vavkkelSrlgvldRyeeevaegRlvpkeehdeafeglresvealeeekqldrvkikdr 187
                 + +k+e  ++++ldR  ee   gR +++ e  +  +     + +l + k +dr+++ ++
  KOO21362.1 730 LDTKSEAVVQEALDRIIEE---GRRTKPGETAKPTRTTVCIAHRLSTLKSADRIVVLEK 785
                 56788888999999*9999...9999999999999999999999999999999998765 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.8   0.6    0.0011      0.55      29     146 ..     133     236 ..     107     268 .. 0.68
   2 !    8.6   0.0    0.0025       1.3      29      53 ..     505     529 ..     481     543 .. 0.87
   3 ?   -3.0   0.0       8.8   4.5e+03     135     174 ..     712     751 ..     698     769 .. 0.56

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.0011
      AAA_25  29 llpagelallaGapgtGKttlaldlalavatGkpwlgpvapeqgkVlyvsaEdsedelrrRlravgealrddarllvldlagv.eslpLfakdrggtll 126
                 + +age + ++G +g+GK+tl+l  + a+ +  +       + g V + ++ d++   ++ ++ ++++l + +++++l + +  e++ L  +dr  + +
  KOO21362.1 133 V-AAGERVGIVGTSGSGKSTLVLLAMRAYELNTS-------KSGSVTV-DGVDTR---QWHVQSLRKQLGLVQQEPILFGLSIaENIALGVADRLASEV 219
                 4.6899999**************99999886552.......4444444.333333...46667777777777777777777777778877777666665 PP

      AAA_25 127 tadvdaleaaieevegvrlv 146
                 t++  ++eaa+++ ++++  
  KOO21362.1 220 TRA--EIEAAAKK-ANAHEF 236
                 443..44545444.334444 PP

  == domain 2  score: 8.6 bits;  conditional E-value: 0.0025
      AAA_25  29 llpagelallaGapgtGKttlaldl 53 
                 ++ ag  + ++Ga+g+GK+tlal +
  KOO21362.1 505 VIEAGQYVGVVGASGSGKSTLALLI 529
                 6788999999************965 PP

  == domain 3  score: -3.0 bits;  conditional E-value: 8.8
      AAA_25 135 aaieevegvrlvviDplsralggdensn.sdv.galvealer 174
                 +a+ + + ++ + +D  ++al+  +++   ++ ++++e  +r
  KOO21362.1 712 RALYR-A-PAILLLDEATAALDTKSEAVvQEAlDRIIEEGRR 751
                 44444.2.5566666666666553333312224555555444 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.1   0.0   0.00063      0.32       1      35 [.     138     173 ..     138     267 .. 0.86
   2 ?    6.2   0.1      0.02        10       2      16 ..     512     526 ..     511     538 .. 0.89

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00063
                 EEEEEESTTSSHHHHHHHHHTS.TEEESSSTTSSSS CS
    MMR_HSR1   1 evaivGrpNvGKStLinaltge.kaivsdkpgtTrd 35 
                 +v+ivG + +GKStL+   +++ +  +s+   +T d
  KOO21362.1 138 RVGIVGTSGSGKSTLVLLAMRAyELNTSKSGSVTVD 173
                 69*************988888767777777777766 PP

  == domain 2  score: 6.2 bits;  conditional E-value: 0.02
                 EEEEESTTSSHHHHH CS
    MMR_HSR1   2 vaivGrpNvGKStLi 16 
                 v++vG + +GKStL 
  KOO21362.1 512 VGVVGASGSGKSTLA 526
                 89***********95 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.2   0.4     0.011       5.6      10      31 ..     141     162 ..     139     299 .. 0.73
   2 ?    6.9   0.0     0.014       6.9      10      27 ..     514     531 ..     507     554 .. 0.84
   3 ?    1.3   0.0      0.73   3.7e+02      80     111 ..     703     740 ..     649     754 .. 0.66

  Alignments for each domain:
  == domain 1  score: 7.2 bits;  conditional E-value: 0.011
      AAA_22  10 vtGesGtGKTtllrrlleqlde 31 
                 ++G sG+GK+tl+   ++ ++ 
  KOO21362.1 141 IVGTSGSGKSTLVLLAMRAYEL 162
                 89**********9988888743 PP

  == domain 2  score: 6.9 bits;  conditional E-value: 0.014
      AAA_22  10 vtGesGtGKTtllrrlle 27 
                 v+G sG+GK+tl+  + +
  KOO21362.1 514 VVGASGSGKSTLALLIGR 531
                 89**********977655 PP

  == domain 3  score: 1.3 bits;  conditional E-value: 0.73
      AAA_22  80 ealeqalrarav...ielliiDEaqh.lr..seealee 111
                  + ++ + ara    +++l++DEa   l+  se++++e
  KOO21362.1 703 GQKQRVAIARALyraPAILLLDEATAaLDtkSEAVVQE 740
                 44444444444455667*******99887754444444 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.2   0.1    0.0033       1.7       1      18 [.     139     156 ..     139     190 .. 0.80
   2 !    8.3   0.0    0.0063       3.2       1      18 [.     512     529 ..     512     552 .. 0.83

  Alignments for each domain:
  == domain 1  score: 9.2 bits;  conditional E-value: 0.0033
      AAA_18   1 IlltGtpGvGKttlakeL 18 
                 +++ Gt+G+GK+tl    
  KOO21362.1 139 VGIVGTSGSGKSTLVLLA 156
                 689**********97655 PP

  == domain 2  score: 8.3 bits;  conditional E-value: 0.0063
      AAA_18   1 IlltGtpGvGKttlakeL 18 
                 +++ G++G+GK+tla  +
  KOO21362.1 512 VGVVGASGSGKSTLALLI 529
                 6899**********9766 PP

>> MeaB  Methylmalonyl Co-A mutase-associated GTPase MeaB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.4   0.1   0.00045      0.23      17      61 ..     124     168 ..     109     179 .. 0.71
   2 ?    4.8   0.0     0.023        12      29      46 ..     509     526 ..     492     542 .. 0.83

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00045
                 HHHHHHGGG-S-SEEEEEEE-TTSSHHHHHHHHHHHHHCTT--EE CS
        MeaB  17 ellerllakaGraqvvGltGvPGaGkstlvealglelrrrGkrva 61 
                  +l+  + +    ++vG+ G+ G+Gkstlv   +  +  +  + +
  KOO21362.1 124 PVLRGFSLDVAAGERVGIVGTSGSGKSTLVLLAMRAYELNTSKSG 168
                 56666666777789***************9655555555555555 PP

  == domain 2  score: 4.8 bits;  conditional E-value: 0.023
                 SEEEEEEE-TTSSHHHHH CS
        MeaB  29 aqvvGltGvPGaGkstlv 46 
                  q vG+ G  G+Gkstl 
  KOO21362.1 509 GQYVGVVGASGSGKSTLA 526
                 578*************85 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.9   0.2    0.0026       1.3     100     135 ..     137     172 ..     130     192 .. 0.76
   2 ?    6.7   0.0     0.012       6.2      99     116 ..     508     526 ..     492     540 .. 0.81

  Alignments for each domain:
  == domain 1  score: 8.9 bits;  conditional E-value: 0.0026
                  SEEEEECSTTSSHHHHHHHHCTT-----S------- CS
  RsgA_GTPase 100 ktsvlvGqSGvGKStLinallpelelktgevseklg 135
                  + + +vG SG GKStL+   +   el+t++  + + 
   KOO21362.1 137 ERVGIVGTSGSGKSTLVLLAMRAYELNTSKSGSVTV 172
                  56679***********98777777777776555555 PP

  == domain 2  score: 6.7 bits;  conditional E-value: 0.012
                  T.SEEEEECSTTSSHHHHH CS
  RsgA_GTPase  99 d.ktsvlvGqSGvGKStLi 116
                    + + +vG SG GKStL 
   KOO21362.1 508 AgQYVGVVGASGSGKSTLA 526
                  4478889**********96 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.2   1.0      0.01       5.3       4      22 ..     141     159 ..     139     271 .. 0.62
   2 !    8.2   0.0     0.005       2.5       4      16 ..     514     526 ..     512     547 .. 0.90

  Alignments for each domain:
  == domain 1  score: 7.2 bits;  conditional E-value: 0.01
      AAA_33   4 lvGlpGsGKstlaerllkk 22 
                 +vG +GsGKstl+   +++
  KOO21362.1 141 IVGTSGSGKSTLVLLAMRA 159
                 69*********98665544 PP

  == domain 2  score: 8.2 bits;  conditional E-value: 0.005
      AAA_33   4 lvGlpGsGKstla 16 
                 +vG++GsGKstla
  KOO21362.1 514 VVGASGSGKSTLA 526
                 79*********98 PP

>> NB-ARC  NB-ARC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.0   0.1     0.012       6.1      23      42 ..     139     158 ..     132     172 .. 0.84
   2 ?   -2.0   0.0       3.2   1.6e+03     155     170 ..     360     375 ..     346     384 .. 0.81
   3 !    6.8   0.1    0.0067       3.4      22      38 ..     511     527 ..     505     537 .. 0.85

  Alignments for each domain:
  == domain 1  score: 6.0 bits;  conditional E-value: 0.012
                 EEEEESTTSSHHHHHHHHCC CS
      NB-ARC  23 valvGmgGvGKttlakqiln 42 
                 v++vG  G+GK+tl+  +++
  KOO21362.1 139 VGIVGTSGSGKSTLVLLAMR 158
                 89************876665 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 3.2
                 EESS--HHHHHHHHHH CS
      NB-ARC 155 evelLekdeawellen 170
                  +++L+ +eaw +++ 
  KOO21362.1 360 ALRSLRSKEAWAIFSV 375
                 5789*********985 PP

  == domain 3  score: 6.8 bits;  conditional E-value: 0.0067
                 EEEEEESTTSSHHHHHH CS
      NB-ARC  22 vvalvGmgGvGKttlak 38 
                  v++vG  G+GK+tla 
  KOO21362.1 511 YVGVVGASGSGKSTLAL 527
                 79*************96 PP

>> APS_kinase  Adenylylsulphate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6   0.1     0.013       6.7       7      53 ..     141     193 ..     136     220 .. 0.76
   2 !    7.0   0.1    0.0099       5.1       6      43 ..     513     549 ..     508     557 .. 0.78

  Alignments for each domain:
  == domain 1  score: 6.6 bits;  conditional E-value: 0.013
                 EESSTTSSHHHHHHHHHH..HHHHTT--EEEEEHHHHTT....TTTTT--SSH CS
  APS_kinase   7 ltGlsgsGKstianalek..kLvekgisvylLdGdnvRh....gLnkdLgfse 53 
                 + G sgsGKst+     +  +L++++   +++dG   R+     L k+Lg  +
  KOO21362.1 141 IVGTSGSGKSTLVLLAMRayELNTSKSGSVTVDGVDTRQwhvqSLRKQLGLVQ 193
                 78*********976554422688888999999999888533335777777655 PP

  == domain 2  score: 7.0 bits;  conditional E-value: 0.0099
                 EEESSTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHTT CS
  APS_kinase   6 wltGlsgsGKstianalekkLvekgisvylLdGdnvRh 43 
                  + G sgsGKst+a  + + + +    ++l+dG  vR+
  KOO21362.1 513 GVVGASGSGKSTLALLIGR-VYDVDEGAVLVDGIDVRE 549
                 5689**********99985.556666777888888885 PP

>> AAA_17  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.0   1.4    0.0071       3.6       1     106 [.     142     265 ..     142     284 .. 0.66
   2 ?    3.4   0.0      0.19        96       1      13 [.     515     527 ..     515     549 .. 0.85

  Alignments for each domain:
  == domain 1  score: 8.0 bits;  conditional E-value: 0.0071
                 EE-TTSSHHHHHHHHHHHHTEEEEEHHHHHHHHHHTTT.....SHSSHHHHC................TSHHHHHHHHHHHHHHHHHHHHHSSEEEEEE CS
      AAA_17   1 lGgPGsGKgtqceklvekygfthlsaGdllreeakrgg.....lakardemr................klpleekkelqkeaaekiaeeakkkgvlvdg 78 
                 +G  GsGK+t++   ++ y++     G++  + +  ++     l k+ + ++                 +  +   e+++  +e+ a++a+ +++++d 
  KOO21362.1 142 VGTSGSGKSTLVLLAMRAYELNTSKSGSVTVDGVDTRQwhvqsLRKQLGLVQqepilfglsiaenialGVADRLASEVTRAEIEAAAKKANAHEFILDA 240
                 699999999999889999999999999999999988863333333333333355555555444432222233333344444445556666778899999 PP

                 -SEEEETTEEEESSHHHHHHHH..SEEE CS
      AAA_17  79 hprikeqagfldglpkevleelkpdaii 106
                   r +  + +ld+++ke   ++ ++++i
  KOO21362.1 241 ARRERVVQHALDTMTKE---DAATTLVI 265
                 99999999999998874...55555555 PP

  == domain 2  score: 3.4 bits;  conditional E-value: 0.19
                 EE-TTSSHHHHHH CS
      AAA_17   1 lGgPGsGKgtqce 13 
                 +G  GsGK+t++ 
  KOO21362.1 515 VGASGSGKSTLAL 527
                 79********985 PP

>> NTPase_1  NTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.2   0.1    0.0042       2.2       2      37 ..     139     179 ..     138     192 .. 0.70
   2 ?    4.2   0.0     0.073        38       2      38 ..     512     550 ..     511     566 .. 0.74

  Alignments for each domain:
  == domain 1  score: 8.2 bits;  conditional E-value: 0.0042
                 EEEE--TTSSHHHHHHHHHHHH........GGGEEEEEEEE CS
    NTPase_1   2 vfiTGppGvGKtTlvkkvlell.....kssgvkvgGfytee 37 
                 v i G +G+GK+Tlv  ++++      ks  v+v+G+ t++
  KOO21362.1 139 VGIVGTSGSGKSTLVLLAMRAYelntsKSGSVTVDGVDTRQ 179
                 7899***********99987651111134457777777766 PP

  == domain 2  score: 4.2 bits;  conditional E-value: 0.073
                 EEEE--TTSSHHHHHHHHHHH..H...GGGEEEEEEEEE CS
    NTPase_1   2 vfiTGppGvGKtTlvkkvlel..lkssgvkvgGfyteev 38 
                 v + G +G+GK+Tl   + ++  +++  v v+G+ ++e 
  KOO21362.1 512 VGVVGASGSGKSTLALLIGRVydVDEGAVLVDGIDVREW 550
                 56889*********9988766113445677888877765 PP

>> FtsK_SpoIIIE  FtsK/SpoIIIE family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.0   0.0     0.013       6.7      41      56 ..     138     153 ..     121     158 .. 0.83
   2 ?    5.1   0.0     0.024        12      44      55 ..     514     525 ..     501     571 .. 0.89

  Alignments for each domain:
  == domain 1  score: 6.0 bits;  conditional E-value: 0.013
                   SEEEE--TTSSHHHHH CS
  FtsK_SpoIIIE  41 hllvaGatgsGKStal 56 
                    + ++G++gsGKSt +
    KOO21362.1 138 RVGIVGTSGSGKSTLV 153
                   5669*********976 PP

  == domain 2  score: 5.1 bits;  conditional E-value: 0.024
                   EE--TTSSHHHH CS
  FtsK_SpoIIIE  44 vaGatgsGKSta 55 
                   v+Ga+gsGKSt 
    KOO21362.1 514 VVGASGSGKSTL 525
                   9*********95 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.2   0.1     0.039        20       4      24 ..     141     163 ..     138     172 .. 0.83
   2 ?    4.2   0.1     0.077        40       4      22 ..     514     532 ..     512     542 .. 0.84
   3 ?    0.7   0.0      0.92   4.7e+02      64      99 ..     716     754 ..     673     779 .. 0.74

  Alignments for each domain:
  == domain 1  score: 5.2 bits;  conditional E-value: 0.039
                 EE--SSSSHHHHHHHGGGGB..S CS
       AAA_5   4 LvGppGtgKselaerlaaal..n 24 
                 +vG +G+gKs+l+    +a+  n
  KOO21362.1 141 IVGTSGSGKSTLVLLAMRAYelN 163
                 79***********9999988443 PP

  == domain 2  score: 4.2 bits;  conditional E-value: 0.077
                 EE--SSSSHHHHHHHGGGG CS
       AAA_5   4 LvGppGtgKselaerlaaa 22 
                 +vG++G+gKs+la  + ++
  KOO21362.1 514 VVGASGSGKSTLALLIGRV 532
                 69**********9887665 PP

  == domain 3  score: 0.7 bits;  conditional E-value: 0.92
                 -G-SEEEEESGGG-.....-HHHHHHHHHHHHSSEEE..-S CS
       AAA_5  64 regeilvlDEvera.....esevlnsLlslleerrllleeg 99 
                 r ++il+lDE + a     e  v+++L +++ee r+   + 
  KOO21362.1 716 RAPAILLLDEATAAldtksEAVVQEALDRIIEEGRRT--KP 754
                 4788999999875522221567999999999999987..33 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.3   0.3      0.24   1.2e+02       3      15 ..     140     152 ..     139     169 .. 0.91
   2 ?    6.5   0.0     0.012       6.1       3      25 ..     513     535 ..     511     569 .. 0.74
   3 ?    1.6   0.0      0.39     2e+02     236     271 ..     699     731 ..     698     753 .. 0.82

  Alignments for each domain:
  == domain 1  score: 2.3 bits;  conditional E-value: 0.24
      AAA_21   3 vliGpNgsGKSnL 15 
                 +++G  gsGKS+L
  KOO21362.1 140 GIVGTSGSGKSTL 152
                 69**********9 PP

  == domain 2  score: 6.5 bits;  conditional E-value: 0.012
      AAA_21   3 vliGpNgsGKSnLLdaldllarl 25 
                 +++G+ gsGKS+L  ++  + ++
  KOO21362.1 513 GVVGASGSGKSTLALLIGRVYDV 535
                 68***********9888777666 PP

  == domain 3  score: 1.6 bits;  conditional E-value: 0.39
      AAA_21 236 elSdGtkrllalltallralkkgsllliDEpEngLH 271
                 +lS G+k+  a++ al+ra+   ++ll+DE  + L+
  KOO21362.1 699 QLSGGQKQRVAIARALYRAP---AILLLDEATAALD 731
                 7899999999**********...*******666666 PP

>> PRK  Phosphoribulokinase / Uridine kinase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.5   0.1     0.049        25       2      19 ..     139     156 ..     139     186 .. 0.76
   2 ?    6.5   0.0     0.012       6.4       2      22 ..     512     532 ..     511     551 .. 0.83

  Alignments for each domain:
  == domain 1  score: 4.5 bits;  conditional E-value: 0.049
         PRK   2 IgvagsSGaGkttvarkl 19 
                 +g+ g SG+Gk+t+    
  KOO21362.1 139 VGIVGTSGSGKSTLVLLA 156
                 69***********86554 PP

  == domain 2  score: 6.5 bits;  conditional E-value: 0.012
         PRK   2 IgvagsSGaGkttvarkleki 22 
                 +gv g+SG+Gk+t+a  +  +
  KOO21362.1 512 VGVVGASGSGKSTLALLIGRV 532
                 79***********99887665 PP

>> ATP-synt_ab  ATP synthase alpha/beta family, nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.3   0.0     0.026        13      11      64 ..     133     255 ..     129     292 .. 0.57
   2 ?    5.6   0.0     0.022        11       9      55 ..     504     551 ..     499     703 .. 0.79

  Alignments for each domain:
  == domain 1  score: 5.3 bits;  conditional E-value: 0.026
                  EBTT-EEEEEESTTSSHHHHH..HHHHHHSSTSS.EEEEEE......................................................... CS
                  xxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxx.xxxxxx......................................................... RF
  ATP-synt_ab  11 ivqGqrtlipgafgvGktvis..qslskqsnsdd.aiiyvg......................................................... 48 
                  ++ G+r++i+g +g Gk++++  ++ + + n+++  ++ v                                                          
   KOO21362.1 133 VAAGERVGIVGTSGSGKSTLVllAMRAYELNTSKsGSVTVDgvdtrqwhvqslrkqlglvqqepilfglsiaenialgvadrlasevtraeieaaakk 230
                  578***************99864222222232222444444455555555555555555555555555555555555555555555555555555555 PP

                  .........ESEEHHHHHHHHHHCH CS
                  .........xxxxxxxxxxxxxxxx RF
  ATP-synt_ab  49 .........iGergnevaevleefp 64 
                              r++ v++ l++++
   KOO21362.1 231 anahefildAARRERVVQHALDTMT 255
                  5555555555555555555555555 PP

  == domain 2  score: 5.6 bits;  conditional E-value: 0.022
                  S-EBTT-EEEEEESTTSSHHHHHHHHHHHSSTSS.EEEEEEESEEHHH CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxx RF
  ATP-synt_ab   9 fpivqGqrtlipgafgvGktvisqslskqsnsdd.aiiyvgiGergne 55 
                  f i  Gq ++++ga+g Gk++++  + +  + d+ a+ + gi  r+ +
   KOO21362.1 504 FVIEAGQYVGVVGASGSGKSTLALLIGRVYDVDEgAVLVDGIDVREWN 551
                  56778******************9999888888766666665555544 PP

>> IstB_IS21  IstB-like ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.7   0.0      0.18        90      44      70 ..     133     158 ..     109     171 .. 0.81
   2 ?    7.5   0.0    0.0061       3.1      37      69 ..     498     531 ..     482     542 .. 0.81

  Alignments for each domain:
  == domain 1  score: 2.7 bits;  conditional E-value: 0.18
   IstB_IS21  44 iekkenivllGpsGvGKshlaialgve 70 
                 +++ e + ++G sG GKs l   l+++
  KOO21362.1 133 VAAGERVGIVGTSGSGKSTLVL-LAMR 158
                 56778899**********9854.5555 PP

  == domain 2  score: 7.5 bits;  conditional E-value: 0.0061
   IstB_IS21  37 eLatlsf.iekkenivllGpsGvGKshlaialgv 69 
                  L + sf ie+ + + ++G sG GKs la  +g+
  KOO21362.1 498 VLSNFSFvIEAGQYVGVVGASGSGKSTLALLIGR 531
                 5666777357788899*************99986 PP

>> CbiA  CobQ/CobB/MinD/ParA nucleotide binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.9   0.1     0.052        26       6      24 ..     143     161 ..     141     296 .. 0.81
   2 ?    5.8   0.0     0.026        13       6      31 ..     516     541 ..     513     740 .. 0.85

  Alignments for each domain:
  == domain 1  score: 4.9 bits;  conditional E-value: 0.052
                 SSTTSSHHHHHHHHHHHHH CS
                 xxxxxxxxxxxxxxxxxxx RF
        CbiA   6 tkGGvGKTtlaanLarala 24 
                 +++G+GK+tl++  +ra  
  KOO21362.1 143 GTSGSGKSTLVLLAMRAYE 161
                 79********998888765 PP

  == domain 2  score: 5.8 bits;  conditional E-value: 0.026
                 SSTTSSHHHHHHHHHHHHHHTT--EE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxx RF
        CbiA   6 tkGGvGKTtlaanLaralarrglrVl 31 
                 + +G+GK+tla+ ++r    ++  Vl
  KOO21362.1 516 GASGSGKSTLALLIGRVYDVDEGAVL 541
                 689*********99998777444444 PP

>> ATP_bind_1  Conserved hypothetical ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.3   0.1    0.0069       3.5       1      32 [.     141     172 ..     141     183 .. 0.82
   2 ?    3.5   0.1       0.1        54       1      13 [.     514     526 ..     514     538 .. 0.85

  Alignments for each domain:
  == domain 1  score: 7.3 bits;  conditional E-value: 0.0069
  ATP_bind_1   1 vvGpaGsGKttfvgalseilelrgrsvavvNL 32 
                 +vG+ GsGK+t+v   +  +el+  ++  v  
  KOO21362.1 141 IVGTSGSGKSTLVLLAMRAYELNTSKSGSVTV 172
                 79***********9888888887766666655 PP

  == domain 2  score: 3.5 bits;  conditional E-value: 0.1
  ATP_bind_1   1 vvGpaGsGKttfv 13 
                 vvG  GsGK+t+ 
  KOO21362.1 514 VVGASGSGKSTLA 526
                 89*********85 PP

>> DUF2809  Protein of unknown function (DUF2809)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0    0.0007      0.36      41      76 ..     501     535 ..     485     538 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.0007
     DUF2809  41 lfavliEllQltqlpallglrattlgrlvLGstfdw 76 
                  f+++iE++Q+++++   g +  + ++l++G+++d+
  KOO21362.1 501 NFSFVIEAGQYVGVVGASGSG-KSTLALLIGRVYDV 535
                 59*******************.6677999**99986 PP

>> Roc  Ras of Complex, Roc, domain of DAPkinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.9   0.1    0.0069       3.5       2      43 ..     139     184 ..     138     194 .. 0.59
   2 ?    2.4   0.0      0.33   1.7e+02       4      17 ..     514     527 ..     512     559 .. 0.69

  Alignments for each domain:
  == domain 1  score: 7.9 bits;  conditional E-value: 0.0069
                 EEEESSTTSSHHHHHHCHCT....-CCC-EEETTTTEEEEEEECGG CS
         Roc   2 vvlvGdsgvGKtsllkrfve....dkfsekekstigvdfltkevtk 43 
                 v +vG sg+GK++l+   ++    ++ ++ + +  gvd+ +++v++
  KOO21362.1 139 VGIVGTSGSGKSTLVLLAMRayelNTSKSGSVTVDGVDTRQWHVQS 184
                 679***********97666521112222223333366666555543 PP

  == domain 2  score: 2.4 bits;  conditional E-value: 0.33
                 EESSTTSSHHHHHH CS
         Roc   4 lvGdsgvGKtsllk 17 
                 +vG sg+GK++l+ 
  KOO21362.1 514 VVGASGSGKSTLAL 527
                 89*********975 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.3   0.1     0.032        17       3      17 ..     139     153 ..     137     172 .. 0.81
   2 ?    5.3   0.2     0.033        17       3      17 ..     512     526 ..     510     531 .. 0.86

  Alignments for each domain:
  == domain 1  score: 5.3 bits;  conditional E-value: 0.032
                 EEEEC-TTTCHHHHH CS
       NACHT   3 vilqGeaGsGKTtLl 17 
                 v + G +GsGK+tL+
  KOO21362.1 139 VGIVGTSGSGKSTLV 153
                 6699*********98 PP

  == domain 2  score: 5.3 bits;  conditional E-value: 0.033
                 EEEEC-TTTCHHHHH CS
       NACHT   3 vilqGeaGsGKTtLl 17 
                 v + G++GsGK+tL+
  KOO21362.1 512 VGVVGASGSGKSTLA 526
                 6799**********8 PP

>> SbcCD_C  Putative exonuclease SbcCD, C subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   0.6    0.0017      0.89      31      88 ..     698     742 ..     689     744 .. 0.75

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.0017
     SbcCD_C  31 gtlSGGekqflaylalaaalaalyssaegrepalrlvfLDEAFsklDeesiatllell 88 
                 ++lSGG+kq    +a+a   +aly+        +++++LDEA + lD +s a + e+l
  KOO21362.1 698 SQLSGGQKQR---VAIA---RALYRA-------PAILLLDEATAALDTKSEAVVQEAL 742
                 6777777743...3444...445555.......89**************998887776 PP

>> DUF815  Protein of unknown function (DUF815)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.3   0.1     0.037        19      56      81 ..     139     164 ..     129     202 .. 0.69
   2 ?    3.6   0.0      0.06        31      58     108 ..     514     568 ..     503     578 .. 0.81
   3 ?   -1.4   0.0       2.1   1.1e+03      41      64 ..     675     698 ..     668     709 .. 0.87

  Alignments for each domain:
  == domain 1  score: 4.3 bits;  conditional E-value: 0.037
      DUF815  56 vLLwGarGtGKSslvkallneyaeeg 81 
                 v ++G+ G+GKS+lv  ++++y+ ++
  KOO21362.1 139 VGIVGTSGSGKSTLVLLAMRAYELNT 164
                 6689***********99988887655 PP

  == domain 2  score: 3.6 bits;  conditional E-value: 0.06
      DUF815  58 LwGarGtGKSslvkallneyaeeg....Lrlievekedlkelpklvellrerper 108
                 ++Ga G+GKS+l   + + y  ++    +  i+v++ +++ l +l+ l++++p  
  KOO21362.1 514 VVGASGSGKSTLALLIGRVYDVDEgavlVDGIDVREWNVRALRSLIGLVQQEPAL 568
                 68*********99888888876655776777999999999999999999998864 PP

  == domain 3  score: -1.4 bits;  conditional E-value: 2.1
      DUF815  41 venteqfleglpannvLLwGarGt 64 
                 ++n+++f++  pa  + + G+rG+
  KOO21362.1 675 MANAATFIDTFPATYATFCGTRGS 698
                 6899*******************7 PP

>> AAA_7  P-loop containing dynein motor region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.0   0.0     0.031        16      31      59 ..     134     162 ..     129     186 .. 0.80
   2 ?    3.7   0.0     0.077        39      27      50 ..     503     526 ..     491     537 .. 0.86

  Alignments for each domain:
  == domain 1  score: 5.0 bits;  conditional E-value: 0.031
       AAA_7  31 knkkpvllvGptGtGKtviikdllkkldk 59 
                 +++  v +vG++G+GK++++   +++++ 
  KOO21362.1 134 AAGERVGIVGTSGSGKSTLVLLAMRAYEL 162
                 56778999**********99887777664 PP

  == domain 2  score: 3.7 bits;  conditional E-value: 0.077
       AAA_7  27 elllknkkpvllvGptGtGKtvii 50 
                 + ++++++ v +vG +G+GK++++
  KOO21362.1 503 SFVIEAGQYVGVVGASGSGKSTLA 526
                 567899999************975 PP

>> MoaE  MoaE protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.7   0.5       0.3   1.5e+02      48      88 ..     240     280 ..     212     285 .. 0.64
   2 ?    7.1   0.1     0.012       6.3      46      88 ..     734     782 ..     719     785 .. 0.77

  Alignments for each domain:
  == domain 1  score: 2.7 bits;  conditional E-value: 0.3
                 HHHHHHHHHHHHHHHHCCCTTSEEEEEEE-EEEETTSEEEE CS
        MoaE  48 epmaektleeiaeearerwelervavvHrlGelevgeasvv 88 
                 +   e+++++ ++ ++++   + ++++Hrl +l   + +vv
  KOO21362.1 240 AARRERVVQHALDTMTKEDAATTLVIAHRLSTLANMNRIVV 280
                 33444555555555555666999*********999999987 PP

  == domain 2  score: 7.1 bits;  conditional E-value: 0.012
                 C-HHHHHHHHHHHHHHHHCCCT.......TSEEEEEEE-EEEETTSEEEE CS
        MoaE  46 ayepmaektleeiaeearerwe.......lervavvHrlGelevgeasvv 88 
                 +   +++++l +i+ee r++ +        + v+++Hrl +l+  + +vv
  KOO21362.1 734 SE-AVVQEALDRIIEEGRRTKPgetakptRTTVCIAHRLSTLKSADRIVV 782
                 43.67788888999998875445566655899****************98 PP

>> AAA_28  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.3   1.1      0.04        21       2      16 ..     139     153 ..     138     239 .. 0.78
   2 ?    4.2   0.0     0.093        47       4      16 ..     514     526 ..     511     538 .. 0.88
   3 ?   -0.2   0.1         2     1e+03      71     121 ..     675     729 ..     667     753 .. 0.57
   4 ?   -0.2   0.0         2     1e+03      16      49 ..     727     760 ..     725     790 .. 0.68

  Alignments for each domain:
  == domain 1  score: 5.3 bits;  conditional E-value: 0.04
      AAA_28   2 ivitGgestGKTtll 16 
                 + i+G++++GK+tl+
  KOO21362.1 139 VGIVGTSGSGKSTLV 153
                 779**********98 PP

  == domain 2  score: 4.2 bits;  conditional E-value: 0.093
      AAA_28   4 itGgestGKTtll 16 
                 ++G++++GK+tl+
  KOO21362.1 514 VVGASGSGKSTLA 526
                 79*********97 PP

  == domain 3  score: -0.2 bits;  conditional E-value: 2
      AAA_28  71 aankvlfcDrglldtlaYaraygge...aeaeleaaar.ekrydlvfllppapei 121
                  an  +f+D+ + + ++++ ++g +    +++ +a+ar   r  +++ll++a  +
  KOO21362.1 675 MANAATFIDTFPATYATFCGTRGSQlsgGQKQRVAIARaLYRAPAILLLDEATAA 729
                 4677778888888888888777776432233333444425555667777765533 PP

  == domain 4  score: -0.2 bits;  conditional E-value: 2
      AAA_28  16 leaLaargypvvpEaareileeklakgedalpwv 49 
                 ++aL  +   vv+Ea  +i+ee+ +++ ++ ++ 
  KOO21362.1 727 TAALDTKSEAVVQEALDRIIEEGRRTKPGETAKP 760
                 567777788899*********9997665544443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (820 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       768  (0.0428356); expected 358.6 (0.02)
Passed bias filter:                      567  (0.0316247); expected 358.6 (0.02)
Passed Vit filter:                        84  (0.00468515); expected 17.9 (0.001)
Passed Fwd filter:                        35  (0.00195214); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              35  [number of targets reported over threshold]
# CPU time: 0.83u 0.32s 00:00:01.14 Elapsed: 00:00:00.50
# Mc/sec: 4927.76
//
Query:       KOO21363.1  [L=321]
Description: hypothetical protein Ctob_003150 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.014   15.8   0.1      0.026   14.9   0.1    1.4  1  Wbp11     WW domain binding protein 11


Domain annotation for each model (and alignments):
>> Wbp11  WW domain binding protein 11
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.9   0.1   1.4e-06     0.026      33      74 ..     180     221 ..     171     224 .. 0.92

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 1.4e-06
       Wbp11  33 klakkdpdeleeeiekLeelessgkldaadkkklekLekelk 74 
                 +++k d+++ e  +++L++ +++g+l++a+++++e Le++l+
  KOO21363.1 180 AMSKTDLSKAEARLADLKRRAATGELTDAERREMEALERKLA 221
                 68999**********************************997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (321 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       634  (0.0353617); expected 358.6 (0.02)
Passed bias filter:                      422  (0.0235373); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.50u 0.26s 00:00:00.76 Elapsed: 00:00:00.45
# Mc/sec: 2158.26
//
Query:       KOO21364.1  [L=342]
Description: 39s ribosomal protein mitochondrial-like protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    5.2e-21   74.6   0.4    8.9e-21   73.8   0.4    1.4  1  MRP-L47        Mitochondrial 39-S ribosomal protein L47 (MRP-
    5.2e-07   29.5   2.8      1e-06   28.6   2.8    1.5  1  Ribosomal_L29  Ribosomal L29 protein
  ------ inclusion threshold ------
      0.054   13.4   0.4      0.054   13.4   0.4    1.6  2  TarH           Tar ligand binding domain homologue


Domain annotation for each model (and alignments):
>> MRP-L47  Mitochondrial 39-S ribosomal protein L47 (MRP-L47)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   73.8   0.4   1.5e-24   8.9e-21       3      87 .]      64     146 ..      62     146 .. 0.89

  Alignments for each domain:
  == domain 1  score: 73.8 bits;  conditional E-value: 1.5e-24
     MRP-L47   3 effddkkdlkseeevkvgraWaaeeLrkksfedLhklwyvllkekNmLlteeeellrkqekmpsperlkkvkesMeniktVlkeR 87 
                 +f d  +++++     +gr W+a eLr ks+edL+klw vll+e+NmL + +  ++++++kmp+ +r+++ ++sM+ ik Vl eR
  KOO21364.1  64 QFIDPYEKDPDRG--EPGRRWRAAELRLKSNEDLQKLWIVLLRERNMLHSTRMLHKKRKTKMPHLGRVQATRKSMAMIKVVLGER 146
                 6666644433444..59******************************************************************99 PP

>> Ribosomal_L29  Ribosomal L29 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.6   2.8   1.7e-10     1e-06       1      57 []      85     146 ..      85     146 .. 0.94

  Alignments for each domain:
  == domain 1  score: 28.6 bits;  conditional E-value: 1.7e-10
                    HHHHHS-HHHHHH...HHHHHHHHHHHHHHHHHHT..SSS-CHHHHHHHHHHHHHHHHHHHH CS
  Ribosomal_L29   1 kelrelsdeeLke...klkelkkeLfnLrfqkatg..qlenpsrirkvRkdIARikTvlrer 57 
                    +elr +s+e+L++    l  ++++L   r+ ++ +  ++  ++r+ ++Rk++A ik vl er
     KOO21364.1  85 AELRLKSNEDLQKlwiVLLRERNMLHSTRMLHKKRktKMPHLGRVQATRKSMAMIKVVLGER 146
                    59***********9999****************99666679*******************98 PP

>> TarH  Tar ligand binding domain homologue
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.4   9.1e-06     0.054      44      95 ..      85     134 ..      82     140 .. 0.92
   2 ?   -3.1   0.2       1.1   6.6e+03      47      65 ..     312     330 ..     309     338 .. 0.62

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 9.1e-06
                 HHHH.HHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSSSSSHHHHHHHHHHH CS
        TarH  44 ytnrlqqqaaLaearvsllqaRltLnragiaaladeaedakellaraeesla 95 
                 ++ rl++ ++L + +  ll++R+ L    +++l++++++   +l r++++++
  KOO21364.1  85 AELRLKSNEDLQKLWIVLLRERNMLHS--TRMLHKKRKTKMPHLGRVQATRK 134
                 67899*********************9..***********999999998876 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 1.1
                 H.HHHHHHHHHHHHHHHHH CS
        TarH  47 rlqqqaaLaearvsllqaR 65 
                 rl++ aa++ a+++ l++R
  KOO21364.1 312 RLAALAAINRAMSAKLRER 330
                 5556666666666655555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (342 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       417  (0.0232584); expected 358.6 (0.02)
Passed bias filter:                      270  (0.0150594); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.45u 0.23s 00:00:00.68 Elapsed: 00:00:00.40
# Mc/sec: 2579.60
//
Query:       KOO21365.1  [L=363]
Description: NmrA-like family protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.1e-19   71.1   0.0    1.5e-19   70.6   0.0    1.1  1  CIA30     Complex I intermediate-associated protein 30 (CIA30


Domain annotation for each model (and alignments):
>> CIA30  Complex I intermediate-associated protein 30 (CIA30)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.6   0.0   8.1e-24   1.5e-19       7     159 ..      38     207 ..      30     208 .. 0.91

  Alignments for each domain:
  == domain 1  score: 70.6 bits;  conditional E-value: 8.1e-24
       CIA30   7 esldkwtllsDrvmGGvStaslklskk.dktalFsGnlstelinrgGFasvrtkkrkrkldlssyegleLrvk.....GDgrkYklnlkteskeqsgls 99 
                 e l  w+ ++D+ mGGvS+++l l  +  ++a+F+G +  +   +gGF+ +r++   ++ldlss +gl+L+++       +r  k++++t+++ + +++
  KOO21365.1  38 EALGMWERIDDVIMGGVSSSRLVLATDaAGGAIFEGRIREQ---GGGFCGQRMRLLAEPLDLSSASGLYLDLDacqvgVGTRVLKVAMRTRQD-RGEVV 132
                 56778*******************866459**********9...***************************998888556799********99.***** PP

       CIA30 100 yqadfetkkgewetvkipfsdfvptfrGrvvedqeel...dlskiksigllls............dkqegpfeLe 159
                 yq  f+ ++   e v +pf++f+ +   r v   ++l   ++++  +i+l++s             ++egpf L 
  KOO21365.1 133 YQRAFQPTARGRELVYLPFDEFRLVRGPRLVPGVPPLsprQANETYQISLVVSkfevsetgaplaSFKEGPFALR 207
                 ******998889*************999*******9955566778999999999****99999999999**9996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (363 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       300  (0.0167327); expected 358.6 (0.02)
Passed bias filter:                      173  (0.00964917); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.22s 00:00:00.66 Elapsed: 00:00:00.38
# Mc/sec: 2830.04
//
Query:       KOO21366.1  [L=86]
Description: hypothetical protein Ctob_004037 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (86 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       187  (0.01043); expected 358.6 (0.02)
Passed bias filter:                      177  (0.00987227); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.25s 00:00:00.59 Elapsed: 00:00:00.40
# Mc/sec: 650.14
//
Query:       KOO21367.1  [L=694]
Description: ap3d1 protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    3.5e-87  293.1   0.0    4.6e-87  292.7   0.0    1.0  1  Adaptin_N    Adaptin N terminal region
    1.9e-18   67.1   0.1    2.7e-15   56.8   0.0    2.9  3  Cnd1         non-SMC mitotic condensation complex subunit 1
    1.3e-08   35.1   2.2    0.00025   21.4   0.1    6.0  8  HEAT_2       HEAT repeats
    1.2e-05   25.5   0.5       0.08   13.1   0.0    3.4  4  RTP1_C1      Required for nuclear transport of RNA pol II C-t
    4.2e-05   24.0  20.3      0.085   13.4   0.1    6.3  7  HEAT_EZ      HEAT-like repeat
    0.00045   20.2  14.4       0.44   10.9   0.1    6.2  7  HEAT         HEAT repeat
     0.0011   17.9   1.1     0.0017   17.3   1.1    1.3  1  DUF3384      Domain of unknown function (DUF3384)
     0.0049   16.3   2.7       0.58    9.5   0.5    3.2  4  DUF5578      Family of unknown function (DUF5578)
  ------ inclusion threshold ------
      0.099   12.4   0.1         17    5.2   0.0    3.6  3  XPC-binding  XPC-binding domain


Domain annotation for each model (and alignments):
>> Adaptin_N  Adaptin N terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  292.7   0.0   2.3e-90   4.6e-87       7     486 ..      29     518 ..      21     577 .. 0.86

  Alignments for each domain:
  == domain 1  score: 292.7 bits;  conditional E-value: 2.3e-90
                 HHHHHHCCSSS-SCHHHHHHHHHHHHHHHCT---GHHHHHHHCCCCSS-CHHHHHHHHHHHHHCTTSCCHHCCCCHHHHHHCCSSSHHHHHHHHHHHCC CS
   Adaptin_N   7 qelaeilnsnkdddekkkeavkkliylialGedvsflffevvklvaskdfelKrlvYlylellaeesedlalLvtnslqkDlkdpnqlirglALrvLss 105
                 +e++  l+s+  d   k +av kl+y+++lG+dvs++ f+ v l+as +f  Kr++Yl++ + +  ++d++lL+tn l+k++ ++     +lAL++Ls 
  KOO21367.1  29 TECKGELSST--DTTVKQHAVLKLMYMHMLGQDVSWAAFHFVDLMASPRFRGKRIGYLAAAQTFTDATDVMLLTTNLLRKSFASSVHHDASLALNSLSV 125
                 5666777777..99************************************************************************************* PP

                 C--CCCHHHHHHHHHHHHT-SSHHHHHHHHHHHHHCCCCCHHCCCCCHHHHHHHCTT-SSHHHHHHHHHHHHHH.HCCCCCCCHHHHHHHCCHHHHHHC CS
   Adaptin_N 106 irvpelaedlapaikkllkdrspyvrkkAalailklykkdpdllrkqlveeikellsdkdpgvvlaAvalleei.kkndrlllkllpklvrrLcnllte 203
                 + +p+l++dl++++++ll++++p vrkkA++a+++l++  p++l+   ++++ e+l+d dp vv+++v++l+e+ + n++ +l l+p l++ L+   t+
  KOO21367.1 126 MATPDLSRDLLQDVTNLLSSSRPLVRKKAVIALYRLLRRLPEALPTA-FPRLREKLDDPDPNVVSCTVNVLTELaTENPKGYLGLAPALYQVLT---TS 220
                 **********************************************8.**************************99******************...** PP

                 S-HHHHHHHHHHHCC---SSHHHH..HHHHHHHCGGCG.CSSCHHHHHHHHHCC..HCCCCSTHHHCCHHCHHHHHHSSCCTCHHHHHCHHHHHHHHXX CS
   Adaptin_N 204 ldpwlqvkiiklltrlarqepeerskkellesllnllq.ssnnaVlletvnliv..elapknelivlavnaLvrllsskdenlryvaLrtllkivkkep 299
                 +++w  +k++k+l++l+++ep+++  k+l++ l+ l++ + ++++ +e+  ++     +++++l++l ++ L+ +++++d+nl+ + L +l+++   ++
  KOO21367.1 221 SSNWTLIKVVKFLRQLVPHEPRLA--KKLVQPLTHLIEtTPAKSLQFECLYTVAstMADSSPQLAQLTATHLQGFIETSDPNLQALGLLALAELQRADK 317
                 ************************..66**********88899******99998323345555***********************************6 PP

                 TTTT.TTTCCCCSXXTTSXHHHHHHHHHHHCCCXXTTTHHHHHHHHHHHTTSSXXHHHHHHHHHHHHHHHHHS....CCHHHHHHHHHHHHHTTXXHHH CS
   Adaptin_N 300 kavq.hldlkifllktdddvsirlkaldlllklvdesNvkeivkeLkkyvkevadedfksklvkaIgrlaekf....atdaewvldvllellslsgesv 393
                   v+  +d ++++l+ d++  +r++al l +++v++ ++  +v +L+ ++  +++ ++++++++ +    ++     +++++w +++l+ l  l  +++
  KOO21367.1 318 ALVEpCRDAILKCLD-DQP-TVRQRALSLISGMVSRASLPGLVAKLMGQL-YTSESSYRDEVIEVLLAAVKAEsfshVPSFRWLVTTLFALAALP-SKH 412
                 6777999*******9.555.69****************************.899**********9987754445699****************66.999 PP

                 HHHHHHHHHHHHHHSTTTSTTCHHHHCCTCCG.............XXSHHHHHHHHHHHHHTTTTXTT....HHHHHHCTTTTTTTSXHHHHHHHHHHH CS
   Adaptin_N 394 kdeivevirdliqkvpelheeiiekLaellek.............ieseearaaaiWllGeygelvsnte.sasdllrslaekfvlesekvklqiltal 478
                 ++++++ + ++  +v++++++++ek +e+le+             ++  + ++aa+W+lGe++++++    ++ +l  +l   + + s  v+++ ++a+
  KOO21367.1 413 DADVAQLLVEVTLRVQSVRGFAAEKALEVLETaldqmagaslpglLQPDATLYAAAWVLGEHSSQLPP-SsQLRSLEVLLCPAVASLSPSVQAACVQAA 510
                 ********************************9888888777775555568****************6.335555555555666666667777777776 PP

                 HHHHHCXG CS
   Adaptin_N 479 vKlyltsp 486
                  +  +  p
  KOO21367.1 511 PRVLVHLP 518
                 66665555 PP

>> Cnd1  non-SMC mitotic condensation complex subunit 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.0       4.2   8.4e+03      29      48 ..      34      53 ..      25      67 .. 0.69
   2 !   56.8   0.0   1.4e-18   2.7e-15       4     145 ..     117     255 ..     116     272 .. 0.93
   3 !    6.5   0.1    0.0039       7.7      16      51 ..     317     351 ..     300     385 .. 0.81

  Alignments for each domain:
  == domain 1  score: -3.3 bits;  conditional E-value: 4.2
        Cnd1 29 rLkDedpyVRktaaivvakL 48
                 L+ +d +V+++a++ +  +
  KOO21367.1 34 ELSSTDTTVKQHAVLKLMYM 53
                56667788888887766555 PP

  == domain 2  score: 56.8 bits;  conditional E-value: 1.4e-18
        Cnd1   4 alairtlgcirvpnlveylvepLrkrLkDedpyVRktaaivvakLilndmvkekgflselaklleDenprVvanalaalteiseksenaiynllpdiis 102
                 +la+ +l+++  p+l   l++++++ L+ + p VRk a+i++ +L+++        + +l++ l+D++p+Vv+ ++++lte+++++++  + l p +++
  KOO21367.1 117 SLALNSLSVMATPDLSRDLLQDVTNLLSSSRPLVRKKAVIALYRLLRRLPEALPTAFPRLREKLDDPDPNVVSCTVNVLTELATENPKGYLGLAPALYQ 215
                 699******************************************9999999999*******************************************9 PP

        Cnd1 103 klsdalnecsewgqitilefLlsyipkdkqeaeslveklcprl 145
                  l +   + s+w+ i++++fL + +p + + a++lv+ l++ +
  KOO21367.1 216 VLTT---SSSNWTLIKVVKFLRQLVPHEPRLAKKLVQPLTHLI 255
                 9994...79*********************7888777776654 PP

  == domain 3  score: 6.5 bits;  conditional E-value: 0.0039
        Cnd1  16 pnlveylvepLrkrLkDedpyVRktaaivvakLiln 51 
                 ++lve+  + + k+L D+ p+VR+ a+ +++ ++++
  KOO21367.1 317 KALVEPCRDAILKCLDDQ-PTVRQRALSLISGMVSR 351
                 468999999999999775.9*******999988554 PP

>> HEAT_2  HEAT repeats
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.0       3.5     7e+03      10      25 ..      36      51 ..      34      89 .. 0.72
   2 !   19.9   0.2   3.6e-07   0.00071      19      79 ..     118     188 ..     101     192 .. 0.79
   3 !   21.4   0.1   1.3e-07   0.00025       6      72 ..     141     218 ..     136     225 .. 0.72
   4 !    8.9   0.0     0.001         2       3      58 ..     175     236 ..     173     272 .. 0.66
   5 ?    5.2   0.5     0.014        27      37      83 ..     291     341 ..     248     346 .. 0.58
   6 !    7.1   0.8    0.0035       6.9      10      67 ..     295     357 ..     285     388 .. 0.62
   7 ?    4.4   1.0     0.024        49       5      55 ..     328     380 ..     324     450 .. 0.74
   8 ?    1.1   0.5      0.27   5.3e+02      16      58 ..     463     513 ..     457     548 .. 0.66

  Alignments for each domain:
  == domain 1  score: -2.5 bits;  conditional E-value: 3.5
      HEAT_2 10 ndpdpevrraairaLg 25
                ++ d+ v+++a+  L 
  KOO21367.1 36 SSTDTTVKQHAVLKLM 51
                4556666666666555 PP

  == domain 2  score: 19.9 bits;  conditional E-value: 3.6e-07
      HEAT_2  19 aairaLgrignp....ealpaLvellededpavRraaaeaLgai......gdpealpaLkellddddddvv 79 
                  a+ +L  +++p    ++l+ +++ll+++ p vR+ a+ aL ++      ++p a p L+e ldd+d  vv
  KOO21367.1 118 LALNSLSVMATPdlsrDLLQDVTNLLSSSRPLVRKKAVIALYRLlrrlpeALPTAFPRLREKLDDPDPNVV 188
                 5666666666664444779999*******************988665554468899*******99998876 PP

  == domain 3  score: 21.4 bits;  conditional E-value: 1.3e-07
      HEAT_2   6 qalendpdpevrraairaLgrignp......ealpaLvellededpavRraaaeaLgaigdpe......alpaLkelld 72 
                 ++l +++ p vr++a++aL r+  +      +a+p L+e l+d+dp+v    ++ L +++++        +paL + l+
  KOO21367.1 141 NLL-SSSRPLVRKKAVIALYRLLRRlpealpTAFPRLREKLDDPDPNVVSCTVNVLTELATENpkgylgLAPALYQVLT 218
                 667.8999************543322334448899999999****************9976432244445566655555 PP

  == domain 4  score: 8.9 bits;  conditional E-value: 0.001
      HEAT_2   3 aLlqalendpdpevrraairaLgrignp......ealpaLvell.ededpavRraaaeaLgai 58 
                  L + l +dpdp+v   ++ +L +++++       + paL ++l ++++ ++   +++ L ++
  KOO21367.1 175 RLREKL-DDPDPNVVSCTVNVLTELATEnpkgylGLAPALYQVLtTSSSNWTLIKVVKFLRQL 236
                 466677.78888888877777776665544444455888888884455667777777777776 PP

  == domain 5  score: 5.2 bits;  conditional E-value: 0.014
      HEAT_2  37 vellededpavRraaaeaLgaigd.peal.....paLkellddddddvvReaA 83 
                   ++e++dp+ ++    aL+++++ ++al     +a +++ld  d + vR++A
  KOO21367.1 291 QGFIETSDPNLQALGLLALAELQRaDKALvepcrDAILKCLD--DQPTVRQRA 341
                 445556666666666666666653222222333355555553..233445554 PP

  == domain 6  score: 7.1 bits;  conditional E-value: 0.0035
      HEAT_2  10 ndpdpevrraairaLg..rignpealpaLvell.e..dedpavRraaaeaLgaigdpealpaL 67 
                 + +dp++++  + aL+  + +++ +++ +++++ +  d+ p vR+ a   ++ + + ++lp L
  KOO21367.1 295 ETSDPNLQALGLLALAelQRADKALVEPCRDAIlKclDDQPTVRQRALSLISGMVSRASLPGL 357
                 567888888888888866566777777777766542256688888888777655433333333 PP

  == domain 7  score: 4.4 bits;  conditional E-value: 0.024
      HEAT_2   5 lqalendpdpevrraairaLgrignpealpaLve.ll...ededpavRraaaeaL 55 
                 l+ l  d  p vr++a+  +  + ++ +lp Lv  l+    ++++  R +++e L
  KOO21367.1 328 LKCL--DDQPTVRQRALSLISGMVSRASLPGLVAkLMgqlYTSESSYRDEVIEVL 380
                 5555..7789999999999997777777666665333211234445555555544 PP

  == domain 8  score: 1.1 bits;  conditional E-value: 0.27
      HEAT_2  16 vrraairaLgrignp........ealpaLvellededpavRraaaeaLgai 58 
                 + +aa+++Lg+  ++        ++  +L +++ + +p v++a ++a+ ++
  KOO21367.1 463 TLYAAAWVLGEHSSQlppssqlrSLEVLLCPAVASLSPSVQAACVQAAPRV 513
                 557899999965555555666634444555577888899999988887544 PP

>> RTP1_C1  Required for nuclear transport of RNA pol II C-terminus 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   0.0       5.4   1.1e+04       7      24 ..      34      51 ..      29      55 .. 0.79
   2 !   13.1   0.0     4e-05      0.08       2      98 ..     137     229 ..     136     241 .. 0.83
   3 ?   -2.5   0.0         3   5.9e+03      11      30 ..     297     316 ..     292     322 .. 0.80
   4 !    8.6   0.1     0.001         2       4      82 ..     326     423 ..     323     449 .. 0.78

  Alignments for each domain:
  == domain 1  score: -3.4 bits;  conditional E-value: 5.4
     RTP1_C1  7 dlqdpllpvrahglvlLr 24
                +l+++   v+ h++++L 
  KOO21367.1 34 ELSSTDTTVKQHAVLKLM 51
                788999999999998885 PP

  == domain 2  score: 13.1 bits;  conditional E-value: 4e-05
     RTP1_C1   2 qealkdlqdpllpvrahglvlLrkliekkskeavldiekilkllleaLkdedsYvYLnaikgLvaLadvfpeevlklLleeyeeenekeslderlkv 98 
                 q + + l+++ + vr ++++ L +l+++      + +++ +  l e L d+d+ v    +++L++La+  p+  l l  + y+  ++++s  + +kv
  KOO21367.1 137 QDVTNLLSSSRPLVRKKAVIALYRLLRRLP----EALPTAFPRLREKLDDPDPNVVSCTVNVLTELATENPKGYLGLAPALYQVLTTSSSNWTLIKV 229
                 6778899********************996....8999*********************************99998877777554555444455555 PP

  == domain 3  score: -2.5 bits;  conditional E-value: 3
     RTP1_C1  11 pllpvrahglvlLrkliekk 30 
                 + + ++a gl+ L++l ++ 
  KOO21367.1 297 SDPNLQALGLLALAELQRAD 316
                 67889999**9999998776 PP

  == domain 4  score: 8.6 bits;  conditional E-value: 0.001
     RTP1_C1   4 alkdlqdpllpvrahglvlLrkliekkske.............avldiekilkllleaLk.....dedsYvYL.naikgLvaLadvfpeevlklLlee 82 
                 a+ ++ d+++ vr ++l+l++ ++++ s               + +  ++++++ll a+k     +  s+ +L     +L+aL ++++++v +lL+e 
  KOO21367.1 326 AILKCLDDQPTVRQRALSLISGMVSRASLPglvaklmgqlytsESSYRDEVIEVLLAAVKaesfsHVPSFRWLvTTLFALAALPSKHDADVAQLLVEV 423
                 66778899******************99779**********999999999999999999844444555666652345667777888888888888876 PP

>> HEAT_EZ  HEAT-like repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.4   0.1   4.3e-05     0.085       8      55 .]     120     161 ..     113     161 .. 0.69
   2 ?    5.2   0.1     0.015        30      22      54 ..     165     197 ..     163     198 .. 0.86
   3 ?   -3.5   0.0       8.6   1.7e+04      35      49 ..     273     287 ..     263     291 .. 0.49
   4 !   10.2   1.1   0.00043      0.86       1      52 [.     299     345 ..     299     346 .. 0.92
   5 ?   -3.1   0.0       6.2   1.2e+04      26      42 ..     354     370 ..     352     376 .. 0.66
   6 ?    4.8   0.6      0.02        41       4      53 ..     426     472 ..     423     473 .. 0.66
   7 ?   -3.4   0.1         8   1.6e+04       6      11 ..     540     545 ..     521     556 .. 0.65

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 4.3e-05
     HEAT_EZ   8 awaLGrlaggepellqplvpeilpaLlalLnddsdeVRaaAagaLgnl 55 
                 ++ L+ +a   p+l +    ++l    +lL+++ ++VR++A++aL +l
  KOO21367.1 120 LNSLSVMA--TPDLSR----DLLQDVTNLLSSSRPLVRKKAVIALYRL 161
                 55555455..555555....444444577778888**********987 PP

  == domain 2  score: 5.2 bits;  conditional E-value: 0.015
     HEAT_EZ  22 lqplvpeilpaLlalLnddsdeVRaaAagaLgn 54 
                 l+ ++p + p L   L d++++V   ++  L+ 
  KOO21367.1 165 LPEALPTAFPRLREKLDDPDPNVVSCTVNVLTE 197
                 678999*****************9888888765 PP

  == domain 3  score: -3.5 bits;  conditional E-value: 8.6
     HEAT_EZ  35 alLnddsdeVRaaAa 49 
                 +++ d+s+   + +a
  KOO21367.1 273 STMADSSPQLAQLTA 287
                 344455554444444 PP

  == domain 4  score: 10.2 bits;  conditional E-value: 0.00043
     HEAT_EZ   1 wrvRraAawaLGrlaggepellqplvpeilpaLlalLnddsdeVRaaAagaL 52 
                 +++++ +++aL++l    + l++p  ++il++L      d+++VR+ A+  +
  KOO21367.1 299 PNLQALGLLALAELQRADKALVEPCRDAILKCLD-----DQPTVRQRALSLI 345
                 679999*****9999999****************.....******9998765 PP

  == domain 5  score: -3.1 bits;  conditional E-value: 6.2
     HEAT_EZ  26 vpeilpaLlalLnddsd 42 
                 +p +++ L+  L ++++
  KOO21367.1 354 LPGLVAKLMGQLYTSES 370
                 46677777777766555 PP

  == domain 6  score: 4.8 bits;  conditional E-value: 0.02
     HEAT_EZ   4 RraAawaLGr..laggepellqplvpeilpaLlalLnddsdeVRaaAagaLg 53 
                 R   ++++++  ++++   +l ++  + lp Ll      +d++ +aAa+ Lg
  KOO21367.1 426 RVQSVRGFAAekALEVLETALDQMAGASLPGLL-----QPDATLYAAAWVLG 472
                 666667776444445555555555556666666.....799**********9 PP

  == domain 7  score: -3.4 bits;  conditional E-value: 8
     HEAT_EZ   6 aAawaL 11 
                 aA++aL
  KOO21367.1 540 AALRAL 545
                 233333 PP

>> HEAT  HEAT repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.9   0.1   0.00022      0.44       5      29 ..     139     163 ..     135     165 .. 0.86
   2 !    8.0   0.0     0.002         4       2      28 ..     173     199 ..     172     201 .. 0.92
   3 !    6.6   0.1    0.0055        11       4      29 ..     326     350 ..     324     352 .. 0.86
   4 ?   -1.1   0.0       1.6   3.2e+03      10      23 ..     373     386 ..     369     386 .. 0.87
   5 ?   -3.3   0.0       8.2   1.6e+04      18      26 ..     465     473 ..     465     473 .. 0.85
   6 ?   -1.4   0.2       2.1   4.1e+03      10      23 ..     496     509 ..     490     509 .. 0.75
   7 ?   -3.5   0.0         9   1.8e+04       3      12 ..     644     653 ..     644     654 .. 0.84

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00022
                 HHHHHT-SSHHHHHHHHHHHHHHHH CS
        HEAT   5 llkllsDpspeVReaAakaLgalae 29 
                 + +lls++ p VR+ A+ aL +l++
  KOO21367.1 139 VTNLLSSSRPLVRKKAVIALYRLLR 163
                 67899****************9975 PP

  == domain 2  score: 8.0 bits;  conditional E-value: 0.002
                 HHHHHHHHT-SSHHHHHHHHHHHHHHH CS
        HEAT   2 lPlllkllsDpspeVReaAakaLgala 28 
                 +P l + l Dp+p+V + +++ L++la
  KOO21367.1 173 FPRLREKLDDPDPNVVSCTVNVLTELA 199
                 5899999*****************998 PP

  == domain 3  score: 6.6 bits;  conditional E-value: 0.0055
                 HHHHHHT-SSHHHHHHHHHHHHHHHH CS
        HEAT   4 lllkllsDpspeVReaAakaLgalae 29 
                 ++lk+l D+ p VR+ A+  +  +++
  KOO21367.1 326 AILKCL-DDQPTVRQRALSLISGMVS 350
                 689987.***********99988875 PP

  == domain 4  score: -1.1 bits;  conditional E-value: 1.6
                 T-SSHHHHHHHHHH CS
        HEAT  10 sDpspeVReaAaka 23 
                 +D+  eV  aA+ka
  KOO21367.1 373 RDEVIEVLLAAVKA 386
                 7999*******997 PP

  == domain 5  score: -3.3 bits;  conditional E-value: 8.2
                 HHHHHHHHH CS
        HEAT  18 eaAakaLga 26 
                 +aAa+ Lg+
  KOO21367.1 465 YAAAWVLGE 473
                 59*****95 PP

  == domain 6  score: -1.4 bits;  conditional E-value: 2.1
                 T-SSHHHHHHHHHH CS
        HEAT  10 sDpspeVReaAaka 23 
                  + sp+V +a+++a
  KOO21367.1 496 ASLSPSVQAACVQA 509
                 556899*****987 PP

  == domain 7  score: -3.5 bits;  conditional E-value: 9
                 HHHHHHHT-S CS
        HEAT   3 PlllkllsDp 12 
                 P+l++ll D 
  KOO21367.1 644 PFLVNLLGDA 653
                 8999999996 PP

>> DUF3384  Domain of unknown function (DUF3384)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   1.1   8.6e-07    0.0017     232     454 ..     129     401 ..      93     416 .. 0.79

  Alignments for each domain:
  == domain 1  score: 17.3 bits;  conditional E-value: 8.6e-07
                 ..GHHHHHHHHHHHHCST...CHHHHHHHHHHHHHT---.........SHHHHHHHHHHHHHHHHHHHHHTT--TT--......---HHHHHHHHHHHH CS
     DUF3384 232 ddlqkevwrilsnllksh...vgnaairslldiLtdpse.........akaaqkedpavlrGAvevlrllllsskgqpedalapslslalllpalraal 318
                 +dl+ + ++ + nll s+   v ++a+  l+++L+  +e         +++ +  dp+v+  +v+vl+ l +   ++p      +  +  l pal ++l
  KOO21367.1 129 PDLSRDLLQDVTNLLSSSrplVRKKAVIALYRLLRRLPEalptafprlREKLDDPDPNVVSCTVNVLTELAT---ENP------KG-YLGLAPALYQVL 217
                 5788888888999998874447899***********888899999*9999999*******************...333......22.224566666666 PP

                 CS--HHHHH.HHHHHHHHHH-----...............---GGGTTS--HHHHHHHHHCCTTTEE------------G................... CS
     DUF3384 319 krqsdvldl.evlqlisdlLpsasv...............srdkllaesdWdalldlliecsrrledlkeedkassssee................... 382
                 ++ s++ +l +v++++++l+p++                 +  k+l+++  +++ + +++ s +l +l+++  +   +++                   
  KOO21367.1 218 TTSSSNWTLiKVVKFLRQLVPHEPRlakklvqplthlietTPAKSLQFECLYTVASTMADSSPQLAQLTATHLQGFIETSdpnlqalgllalaelqrad 316
                 6555554432466666666666555555555555555555668**********************999988877766666899**************** PP

                 ..............E-HHHHHHHHHHHHHHHHHHHHGGGSTTHHHHHHHHHHHH-XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
     DUF3384 383 ..............eksslaaelssllsslesllesgedsgqkekliafflevssalpdstaeavLkyldkerlcspsnedWlenl 454
                                +++ +   ++ ls ++ +++++++ g   kl+ ++ ++ s   d+ +e +L   + e+ ++ ++ +Wl ++
  KOO21367.1 317 kalvepcrdailkcLDDQPTVR-QRALSLISGMVSRASLPGLVAKLMGQLYTSESSYRDEVIEVLLAAVKAESFSHVPSFRWLVTT 401
                 ******9999998733333333.344466777777899*****************************************99*9776 PP

>> DUF5578  Family of unknown function (DUF5578)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.2   0.0     0.012        24     153     252 ..     101     201 ..      96     210 .. 0.90
   2 !    9.5   0.5   0.00029      0.58     153     232 ..     214     291 ..     208     321 .. 0.77
   3 ?   -0.3   0.0      0.29   5.8e+02     209     249 ..     342     383 ..     309     394 .. 0.67
   4 ?   -0.6   0.0      0.36   7.1e+02     168     198 ..     358     388 ..     339     444 .. 0.70

  Alignments for each domain:
  == domain 1  score: 4.2 bits;  conditional E-value: 0.012
     DUF5578 153 aeclakskseetqeeaqkllesl.aegnPkyqkqvykgliallacsspkaqqlalqtlrvvqeivkeakpsivepllelLkslhlevqyeaielikelm 250
                 +++l ks  ++++++a+  l+sl + + P++++ + + +  ll++s p  ++ a+ +l  + ++++ea p+   +l e L   + +v + +++++ el+
  KOO21367.1 101 TNLLRKSFASSVHHDASLALNSLsVMATPDLSRDLLQDVTNLLSSSRPLVRKKAVIALYRLLRRLPEALPTAFPRLREKLDDPDPNVVSCTVNVLTELA 199
                 6778899999999999999998835789*******************************************************************9998 PP

     DUF5578 251 st 252
                 ++
  KOO21367.1 200 TE 201
                 75 PP

  == domain 2  score: 9.5 bits;  conditional E-value: 0.00029
     DUF5578 153 aeclakskseetqeeaqklleslaegnPkyqkqvykgliallacsspkaqqlalqtlrvvqeivkeakpsivepllelLk 232
                  ++l++s+s+ t  ++ k+l++l+   P++ k++ + l  l++++   a+ l+ + l +v +++ ++ p++ + + + L+
  KOO21367.1 214 YQVLTTSSSNWTLIKVVKFLRQLVPHEPRLAKKLVQPLTHLIETTP--AKSLQFECLYTVASTMADSSPQLAQLTATHLQ 291
                 5799************************************999554..66666777888888888777777665555443 PP

  == domain 3  score: -0.3 bits;  conditional E-value: 0.29
     DUF5578 209 lrvvqeivkeak.psivepllelLkslhlevqyeaielikel 249
                 l +++ +v++a  p +v +l+  L + ++  ++e+ie++ + 
  KOO21367.1 342 LSLISGMVSRASlPGLVAKLMGQLYTSESSYRDEVIEVLLAA 383
                 444555555444466666666666666666666666665443 PP

  == domain 4  score: -0.6 bits;  conditional E-value: 0.36
     DUF5578 168 aqklleslaegnPkyqkqvykgliallacss 198
                 + kl+ +l ++  +y++ v + l+a ++++s
  KOO21367.1 358 VAKLMGQLYTSESSYRDEVIEVLLAAVKAES 388
                 3455555555555566666555555555554 PP

>> XPC-binding  XPC-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.0       1.4   2.8e+03      27      37 ..     194     204 ..     192     205 .. 0.87
   2 ?    2.2   0.1     0.078   1.5e+02      13      31 ..     233     251 ..     229     253 .. 0.87
   3 ?    5.2   0.0    0.0085        17      29      51 ..     273     295 ..     266     296 .. 0.85

  Alignments for each domain:
  == domain 1  score: -1.8 bits;  conditional E-value: 1.4
  XPC-binding  27 lLqqlaqsnPq 37 
                  +L +la +nP+
   KOO21367.1 194 VLTELATENPK 204
                  8999*****95 PP

  == domain 2  score: 2.2 bits;  conditional E-value: 0.078
  XPC-binding  13 lRqlvqqnPqlLqplLqql 31 
                  lRqlv + P l ++l+q l
   KOO21367.1 233 LRQLVPHEPRLAKKLVQPL 251
                  899******9999999976 PP

  == domain 3  score: 5.2 bits;  conditional E-value: 0.0085
  XPC-binding  29 qqlaqsnPqllqlIqqnqeeFlq 51 
                    +a s Pql+ql + + + F++
   KOO21367.1 273 STMADSSPQLAQLTATHLQGFIE 295
                  67899***************996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (694 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       386  (0.0215294); expected 358.6 (0.02)
Passed bias filter:                      312  (0.017402); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.67u 0.30s 00:00:00.97 Elapsed: 00:00:00.48
# Mc/sec: 4339.25
//
Query:       KOO21368.1  [L=1364]
Description: tubulin folding cofactor b [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
      6e-44  149.1   0.0    2.1e-12   47.8   0.0    7.1  7  Filamin      Filamin/ABP280 repeat
    7.7e-15   55.0   0.0    1.8e-14   53.9   0.0    1.6  1  C2           C2 domain
    3.5e-14   52.6   0.4    6.9e-14   51.6   0.4    1.5  1  CAP_GLY      CAP-Gly domain
    1.1e-11   44.9   0.0       0.03   14.6   0.0    4.2  4  Invasin_D3   Invasin, domain 3
     0.0015   18.5   0.0      0.016   15.2   0.0    2.9  4  Big_1        Bacterial Ig-like domain (group 1)
  ------ inclusion threshold ------
      0.017   15.1   0.0        1.2    9.1   0.0    2.7  3  Y_Y_Y        Y_Y_Y domain
      0.061   13.3   0.0        3.5    7.6   0.0    3.0  3  FixH         FixH


Domain annotation for each model (and alignments):
>> Filamin  Filamin/ABP280 repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.8   0.0   8.2e-16   2.1e-12       4     102 ..     172     264 ..     169     265 .. 0.91
   2 !   16.0   0.0   6.1e-06     0.016       3      50 ..     274     322 ..     272     459 .. 0.85
   3 !   10.4   0.0   0.00034      0.87      73     102 ..     669     700 ..     620     701 .. 0.93
   4 !   31.9   0.0   7.1e-11   1.8e-07      18     101 ..     726     805 ..     713     807 .. 0.93
   5 ?    1.0   0.0      0.29   7.3e+02      71      98 ..     926     954 ..     836     963 .. 0.83
   6 ?    1.3   0.0      0.23     6e+02      81     102 ..    1071    1092 ..    1069    1093 .. 0.89
   7 !   29.9   0.0   2.9e-10   7.4e-07       5      96 ..    1104    1186 ..    1100    1190 .. 0.80

  Alignments for each domain:
  == domain 1  score: 47.8 bits;  conditional E-value: 8.2e-16
                 TTSEEEESGGGTEEETTS-EEEEEEESSSTSCCCSTTS..EEEEE..ESSTS.....EEEEEEEE-SSSEEEEEE--SSSCEEEEEEEETTCE-TTSSE CS
     Filamin   4 pskskvnGpGieasvagesltFtvytkdakgeksevggdelqvrivtgsphgaatkssvkievvdnedgtytvsYtpeepgtyrvsvkldgkhiggsPf 102
                 +  s++ G G++++v+ +  ++t+ ++da+g+ +++ggd l v ++  sp       ++ ++ +d++ g+y+++Y++e +g++ + v ++g+ ++gsPf
  KOO21368.1 172 AATSVAAGRGLHTAVVAQLSQITITCNDAYGR-RTSGGDSLSVIVRGVSPPT-----QLRVKLHDHGKGVYVAEYRAELSGQLLIAVCIRGEAVPGSPF 264
                 5668899************************9.8899********7666644.....58999************************************9 PP

  == domain 2  score: 16.0 bits;  conditional E-value: 6.1e-06
                 STTSEEEESGGGTEEETTS-EEEEEEESSSTSCCCSTTS..EEEEE..... CS
     Filamin   3 dpskskvnGpGieasvagesltFtvytkdakgeksevggdelqvriv...t 50 
                 ++s++k+ G+ + a+va +++ F+++  da g++    ++el+vr++    
  KOO21368.1 274 EASQCKLRGNALVAAVARKPMAFEIDFVDALGNPAA--AEELDVRLEraeP 322
                 799******************************655..6999999964440 PP

  == domain 3  score: 10.4 bits;  conditional E-value: 0.00034
                 EEEEEE--SSSCEEEEEEEETTCE-..TTSSE CS
     Filamin  73 tytvsYtpeepgtyrvsvkldgkhi..ggsPf 102
                 t++vsY + ++g+y ++v l+++++  +gsPf
  KOO21368.1 669 THQVSYSVGAAGKYLMHVGLRQQSVvlPGSPF 700
                 899*****************999765589999 PP

  == domain 4  score: 31.9 bits;  conditional E-value: 7.1e-11
                 ETTS-EEEEEEESSSTSCCCSTTS..EEEEE..ESSTS.....EEEEEEEE-SSSEEEEEE--SSSCEEEEEEEETTCE-TTSS CS
     Filamin  18 vagesltFtvytkdakgeksevggdelqvrivtgsphgaatkssvkievvdnedgtytvsYtpeepgtyrvsvkldgkhiggsP 101
                 v+g +    v++ d+ g+k+  gg  l+v ++t++  +a     ++++++d++dgt+ v++  e + +y +++k+ g hi gsP
  KOO21368.1 726 VVGTQGRLVVHLSDCMGNKCIEGGAHLEVSVNTNGAPKA----ALTCKCDDQQDGTFLVTWSSEVSHKYMLELKIHGVHIVGSP 805
                 678888999**********************98888888....8**************************************** PP

  == domain 5  score: 1.0 bits;  conditional E-value: 0.29
                 SS.EEEEEE--SSSCEEEEEEEETTCE-T CS
     Filamin  71 dg.tytvsYtpeepgtyrvsvkldgkhig 98 
                 dg   ++s+ p+e+g+++++v +  + ig
  KOO21368.1 926 DGsRMKMSFVPKEAGDFELHVWCEPNTIG 954
                 45357899*************99877765 PP

  == domain 6  score: 1.3 bits;  conditional E-value: 0.23
                  SSSCEEEEEEEETTCE-TTSSE CS
     Filamin   81 eepgtyrvsvkldgkhiggsPf 102 
                  + +g +rvs+ l g++i g P 
  KOO21368.1 1071 TVKGAHRVSIQLFGESITGAPI 1092
                  56899***************96 PP

  == domain 7  score: 29.9 bits;  conditional E-value: 2.9e-10
                  TSEEEESGGGTEEETTS-EEEEEEESSSTSCCCSTTS..EEEEE..ESSTS.....EEEEEEEE-SSSEEEEEE--SSSCEEEEEEEETTCE CS
     Filamin    5 skskvnGpGieasvagesltFtvytkdakgeksevggdelqvrivtgsphgaatkssvkievvdnedgtytvsYtpeepgtyrvsvkldgkh 96  
                  +ks+++ +G  ++ +  ++ ++ ++ d++g+++e+gg +++ +    ++  +      +++vvdn +gt+ +s+ ++ pg+y+v+ +l + +
  KOO21368.1 1104 HKSYLEAKG-SRQEIDSPIDVILHLLDKYGNRCEQGGVRVDAKA--YGS--K----ASEAKVVDNSNGTFSISFSAAVPGDYKVQCRLENAD 1186
                  788888888.555799***************9998765444444..222..2....33567************************9999876 PP

>> C2  C2 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.9   0.0     7e-18   1.8e-14       1      95 [.     358     456 ..     358     463 .. 0.89

  Alignments for each domain:
  == domain 1  score: 53.9 bits;  conditional E-value: 7e-18
                 TEEEEEEEEEESSSSSSTTSSCEEEEEEEEECEEEEEE-SCSSSSSSEEEEEEEEEESC..HTTSEEEEEEEEECS...SSTEEEEEEEEEEGHHHHTT CS
          C2   1 gklevtvieAknLpnkdkkgssdpyvkvsldgkqkakTrviknslnPvWnekftfevae..leeakLeveVfdndr...lskddfiGkveiplstllsg 94 
                 g+l+v   +A +L   d +g+sdpyv++ +  ++kak+++++++l+PvWne+f+f  +     ++ L v+V+d d+    +kdd++G+  ++l++l+++
  KOO21368.1 358 GTLCVLLSKASGLDSADLNGKSDPYVVLLC-AEHKAKSTIKPKTLSPVWNEDFSFAGTLqsFVTSGLMVKVYDCDNplkPEKDDLLGEKLVSLDSLKHQ 455
                 68999999**********************.********99**************66655588999*******999876799*********99996555 PP

                 H CS
          C2  95 e 95 
                 +
  KOO21368.1 456 N 456
                 4 PP

>> CAP_GLY  CAP-Gly domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.6   0.4   2.7e-17   6.9e-14       2      63 ..      62     127 ..      61     129 .. 0.85

  Alignments for each domain:
  == domain 1  score: 51.6 bits;  conditional E-value: 2.7e-17
     CAP_GLY   2 gdrv..k.lkegrrGvvryvGpvp.fakgewvGveldepnGkndGsvkgkrYFeckpnrGvFvrpe 63 
                 gdr+  k  +   +Gv+++vG+v    +g+wvGv  dep+G  +G ++g+r+F c++++G F   +
  KOO21368.1  62 GDRCavKsDTVSGTGVIQFVGEVAsLGPGMWVGVLHDEPVGTSNGVIDGRRLFACPNKHGGFYAVH 127
                 78864334455678*********866688*********************************8765 PP

>> Invasin_D3  Invasin, domain 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.6   0.0   1.2e-05      0.03      21      84 ..     190     258 ..     182     269 .. 0.77
   2 !   12.1   0.0   7.4e-05      0.19      24      94 ..     733     811 ..     728     813 .. 0.75
   3 ?   -3.5   0.0       5.4   1.4e+04      21      37 ..     995    1011 ..     981    1029 .. 0.67
   4 !   12.8   0.0   4.5e-05      0.12      24      82 ..    1123    1184 ..    1110    1194 .. 0.79

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 1.2e-05
  Invasin_D3  21 tstltvtlkDangnpvsg.ltvtfsttsag....tlsavt..dngdGtytatLtattagtatitptvnGva 84 
                  s++t+t  Da g  +sg ++ ++  +  g    t   v+  d+g+G+y a+  a+ +g++ i + + G+a
  KOO21368.1 190 LSQITITCNDAYGRRTSGgDSLSVIVR--GvsppTQLRVKlhDHGKGVYVAEYRAELSGQLLIAVCIRGEA 258
                 589************666377777755..4245533333355*************************9944 PP

  == domain 2  score: 12.1 bits;  conditional E-value: 7.4e-05
  Invasin_D3  24 ltvtlkDangnp.vsg.ltvtfsttsag.....tls.avtdngdGtytatLtattagtatitptvnG.vaiaatatvtlt 94 
                 l v l D  gn  + g +  ++s + +g       + + +d++dGt  +t +++ + ++ ++ ++ G  + +++a +tl 
  KOO21368.1 733 LVVHLSDCMGNKcIEGgAHLEVSVNTNGapkaaL-TcKCDDQQDGTFLVTWSSEVSHKYMLELKIHGvHIVGSPAPLTLL 811
                 678999999**99776455666666556444322.23566***************************7777777778876 PP

  == domain 3  score: -3.5 bits;  conditional E-value: 5.4
  Invasin_D3   21 tstltvtlkDangnpvs 37  
                  +  l+v++ D+++n vs
  KOO21368.1  995 KLALKVQICDEFNNFVS 1011
                  34577777777777654 PP

  == domain 4  score: 12.8 bits;  conditional E-value: 4.5e-05
  Invasin_D3   24 ltvtlkDangnp..vsgltvtfstt.sagtlsavtdngdGtytatLtattagtatitptvnG 82  
                  + + l D+ gn    +g  v  ++  s+ +  +v dn++Gt +  ++a+  g ++++  +++
  KOO21368.1 1123 VILHLLDKYGNRceQGGVRVDAKAYgSKASEAKVVDNSNGTFSISFSAAVPGDYKVQCRLEN 1184
                  668899******65555556666553333555788*********************999987 PP

>> Big_1  Bacterial Ig-like domain (group 1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.0       3.3   8.3e+03       8      22 ..     192     206 ..     190     207 .. 0.82
   2 ?   -2.9   0.0       2.8   7.3e+03      25      57 ..     753     787 ..     750     790 .. 0.67
   3 ?   -3.7   0.0       5.1   1.3e+04       7      22 ..     996    1011 ..     994    1011 .. 0.83
   4 !   15.2   0.0   6.4e-06     0.016       7      63 ..    1121    1179 ..    1118    1180 .. 0.88

  Alignments for each domain:
  == domain 1  score: -3.1 bits;  conditional E-value: 3.3
       Big_1   8 tltatvkDangnpva 22 
                 ++t+t  Da+g   +
  KOO21368.1 192 QITITCNDAYGRRTS 206
                 799*******98665 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 2.8
       Big_1  25 tVtfsvsg..galsassgtTdanGkatvtltstka 57 
                 +V+++++g   a+++ +    ++G++ vt +s ++
  KOO21368.1 753 EVSVNTNGapKAALTCKCDDQQDGTFLVTWSSEVS 787
                 67777777533333667777788999998888775 PP

  == domain 3  score: -3.7 bits;  conditional E-value: 5.1
       Big_1    7 ntltatvkDangnpva 22  
                    l++ + D+++n v+
  KOO21368.1  996 LALKVQICDEFNNFVS 1011
                  56899********885 PP

  == domain 4  score: 15.2 bits;  conditional E-value: 6.4e-06
       Big_1    7 ntltatvkDangnpvagatVtfsvsg.gals.assgtTdanGkatvtltstkagtvtvt 63  
                  + +  ++ D++gn  +   V + + + g+ + +++++ ++nG+++++++  ++g+++v+
  KOO21368.1 1121 IDVILHLLDKYGNRCEQGGVRVDAKAyGSKAsEAKVVDNSNGTFSISFSAAVPGDYKVQ 1179
                  56778999*******99999999999966666************************996 PP

>> Y_Y_Y  Y_Y_Y domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.8   0.0       5.2   1.3e+04      30      45 ..     671     686 ..     667     686 .. 0.82
   2 ?    2.7   0.0     0.047   1.2e+02      27      48 ..     928     949 ..     921     952 .. 0.82
   3 ?    9.1   0.0   0.00048       1.2      24      52 ..    1158    1187 ..    1147    1189 .. 0.83

  Alignments for each domain:
  == domain 1  score: -3.8 bits;  conditional E-value: 5.2
                 EEEEES--SEEEEEEE CS
       Y_Y_Y  30 easytnlppGdYtlkV 45 
                 ++sy+   +G+Y  +V
  KOO21368.1 671 QVSYSVGAAGKYLMHV 686
                 899999999***8776 PP

  == domain 2  score: 2.7 bits;  conditional E-value: 0.047
                 TS.EEEEES--SEEEEEEEEEE CS
       Y_Y_Y  27 ysqeasytnlppGdYtlkVkak 48 
                 ++++ s+ ++++Gd++l+V + 
  KOO21368.1 928 SRMKMSFVPKEAGDFELHVWCE 949
                 444889*************985 PP

  == domain 3  score: 9.1 bits;  conditional E-value: 0.00048
                  ESSTS..EEEEES--SEEEEEEEEEEETTS CS
       Y_Y_Y   24 asdysq.easytnlppGdYtlkVkakdndg 52  
                  ++++++ ++s++   pGdY+++++  + d 
  KOO21368.1 1158 DNSNGTfSISFSAAVPGDYKVQCRLENADL 1187
                  5666678****************9888775 PP

>> FixH  FixH
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.6   0.0    0.0013       3.5      54     134 ..     172     252 ..     170     265 .. 0.87
   2 ?    1.0   0.0      0.15   3.8e+02      64      99 ..     285     320 ..     269     321 .. 0.82
   3 ?   -0.8   0.0      0.55   1.4e+03     107     137 ..    1153    1183 ..    1146    1193 .. 0.80

  Alignments for each domain:
  == domain 1  score: 7.6 bits;  conditional E-value: 0.0013
        FixH  54 arakaaqalglsadvaldegeltitlrdaagkp.veaaaltlslshptdagkDkklkLteaangvYrapleallkGrWyvql 134
                 a++ +a+  gl+  v  +  ++tit  da g+  + +++l++ + + + +    ++kL+ +++gvY+a+  a l+G+  + +
  KOO21368.1 172 AATSVAAGRGLHTAVVAQLSQITITCNDAYGRRtSGGDSLSV-IVRGVSPPTQLRVKLHDHGKGVYVAEYRAELSGQLLIAV 252
                 67889999******************9999988567777777.6699999999***************99999999988877 PP

  == domain 2  score: 1.0 bits;  conditional E-value: 0.15
        FixH  64 lsadvaldegeltitlrdaagkpveaaaltlslshp 99 
                 l a va ++ + +i++ da g p++a++l+++l ++
  KOO21368.1 285 LVAAVARKPMAFEIDFVDALGNPAAAEELDVRLERA 320
                 446677777999********************9985 PP

  == domain 3  score: -0.8 bits;  conditional E-value: 0.55
        FixH  107 klkLteaangvYrapleallkGrWyvqlaae 137 
                  + k +  +ng++ ++++a ++G ++vq   e
  KOO21368.1 1153 EAKVVDNSNGTFSISFSAAVPGDYKVQCRLE 1183
                  56677899******************97444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1364 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       989  (0.055162); expected 358.6 (0.02)
Passed bias filter:                      607  (0.0338558); expected 358.6 (0.02)
Passed Vit filter:                        80  (0.00446204); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.97u 0.32s 00:00:01.29 Elapsed: 00:00:00.48
# Mc/sec: 8571.75
//
Query:       KOO21369.1  [L=320]
Description: hypothetical protein Ctob_004043 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    4.3e-12   45.7   1.0    2.6e-06   27.2   0.2    2.6  2  EF-hand_8    EF-hand domain pair
    2.8e-10   39.3   3.0       0.01   15.7   0.3    4.0  4  EF-hand_6    EF-hand domain
      2e-09   36.3   2.7      0.042   13.4   0.2    4.0  4  EF-hand_1    EF hand
    2.1e-09   37.7   2.5    2.7e-05   24.5   0.2    2.8  3  EF-hand_7    EF-hand domain pair
    0.00081   18.8   3.0        3.8    7.2   0.1    3.6  3  EF-hand_5    EF hand
  ------ inclusion threshold ------
      0.045   13.9   0.5       0.39   10.9   0.2    2.3  2  p25-alpha    p25-alpha
      0.051   13.5   0.2        1.9    8.4   0.1    2.4  2  Armet        Degradation arginine-rich protein for mis-foldin
      0.083   13.3   0.1       0.56   10.6   0.1    2.3  2  DDE_Tnp_1_2  Transposase DDE domain
       0.11   12.5   0.0       0.16   12.0   0.0    1.3  1  Bact_lectin  Bacterial lectin
       0.19   11.9   2.9       0.57   10.3   0.1    2.8  3  Med9         RNA polymerase II transcription mediator complex
       0.22   11.3   5.1        4.1    7.2   0.1    3.4  3  EspA         EspA-like secreted protein


Domain annotation for each model (and alignments):
>> EF-hand_8  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.0   2.9e-06    0.0048       2      51 ..     102     150 ..     101     152 .. 0.86
   2 !   27.2   0.2   1.6e-09   2.6e-06       2      47 ..     237     280 ..     236     287 .. 0.93

  Alignments for each domain:
  == domain 1  score: 16.7 bits;  conditional E-value: 2.9e-06
   EF-hand_8   2 kgkItreelrril.rilglkkglseeevdilfrefDtdgdGkisfeEFcvl 51 
                 kg+I +  +r  +  +lg+k   +++e+d  f+ +D+d+ G +++ E    
  KOO21369.1 102 KGEIKKIAFRQKVrGSLGIK--ANNSEIDNFFNSMDEDKGGSLDLAELKPA 150
                 67888888888777788999..************************98765 PP

  == domain 2  score: 27.2 bits;  conditional E-value: 1.6e-09
   EF-hand_8   2 kgkItreelrrilrilglkkglseeevdilfrefDtdgdGkisfeE 47 
                 +g++++ e+r++++ lg k   s++e+d+lf+ +D+dg G ++  E
  KOO21369.1 237 DGSVDKKEFRENVKELGVK--ASDDEIDALFDSLDEDGGGSLGAPE 280
                 79***********999***..*******************998766 PP

>> EF-hand_6  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.0         3   4.9e+03       7      17 ..      95     105 ..      92     112 .. 0.75
   2 !   15.7   0.3   6.1e-06      0.01       1      27 [.     126     152 ..     126     156 .. 0.92
   3 !    9.2   0.0   0.00074       1.2       9      27 ..     232     250 ..     230     253 .. 0.83
   4 !   11.8   0.0   0.00011      0.18       1      26 [.     260     285 ..     260     290 .. 0.92

  Alignments for each domain:
  == domain 1  score: -2.0 bits;  conditional E-value: 3
   EF-hand_6   7 klfDkdgdGki 17 
                 + +D +g G+i
  KOO21369.1  95 RDWDSEGKGEI 105
                 56799999988 PP

  == domain 2  score: 15.7 bits;  conditional E-value: 6.1e-06
   EF-hand_6   1 elreaFklfDkdgdGkidaeElrkalr 27 
                 e++ +F+ +D d+ G++d +El+ al+
  KOO21369.1 126 EIDNFFNSMDEDKGGSLDLAELKPALK 152
                 5789*******************9998 PP

  == domain 3  score: 9.2 bits;  conditional E-value: 0.00074
   EF-hand_6   9 fDkdgdGkidaeElrkalr 27 
                 +D ++dG++d++E+r   +
  KOO21369.1 232 WDPSNDGSVDKKEFRENVK 250
                 7999**********97655 PP

  == domain 4  score: 11.8 bits;  conditional E-value: 0.00011
   EF-hand_6   1 elreaFklfDkdgdGkidaeElrkal 26 
                 e++++F+ +D dg G++ a El+ al
  KOO21369.1 260 EIDALFDSLDEDGGGSLGAPELKLAL 285
                 6889*******************998 PP

>> EF-hand_1  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.0       1.6   2.6e+03       4      17 ..      92     105 ..      90     107 .. 0.84
   2 !   13.4   0.2   2.6e-05     0.042       1      27 [.     126     152 ..     126     154 .. 0.93
   3 !   11.3   0.1   0.00012       0.2       3      24 ..     226     247 ..     224     247 .. 0.88
   4 !    9.1   0.0   0.00062         1       1      27 [.     260     286 ..     260     288 .. 0.92

  Alignments for each domain:
  == domain 1  score: -1.6 bits;  conditional E-value: 1.6
                 HHHHHHTTTSSSEE CS
   EF-hand_1   4 eiFrefDkDgdGkI 17 
                 e+ r+ D  g G I
  KOO21369.1  92 ELLRDWDSEGKGEI 105
                 56788999***998 PP

  == domain 2  score: 13.4 bits;  conditional E-value: 2.6e-05
                 HHHHHHHHHTTTSSSEEEHHHHHHHHH CS
   EF-hand_1   1 elkeiFrefDkDgdGkIdfeEfkellk 27 
                 e++++F+ +D D+ G +d+ E+k +lk
  KOO21369.1 126 EIDNFFNSMDEDKGGSLDLAELKPALK 152
                 79********************98776 PP

  == domain 3  score: 11.3 bits;  conditional E-value: 0.00012
                 HHHHHHHTTTSSSEEEHHHHHH CS
   EF-hand_1   3 keiFrefDkDgdGkIdfeEfke 24 
                  +i+ + D  +dG +d++Ef+e
  KOO21369.1 226 SDIIIKWDPSNDGSVDKKEFRE 247
                 6788899*************96 PP

  == domain 4  score: 9.1 bits;  conditional E-value: 0.00062
                 HHHHHHHHHTTTSSSEEEHHHHHHHHH CS
   EF-hand_1   1 elkeiFrefDkDgdGkIdfeEfkellk 27 
                 e++ +F+ +D Dg G +   E+k +l 
  KOO21369.1 260 EIDALFDSLDEDGGGSLGAPELKLALV 286
                 799********************9986 PP

>> EF-hand_7  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.2   0.1   0.00011      0.18      12      67 ..      98     148 ..      61     152 .. 0.80
   2 !   10.8   0.1   0.00032      0.53       4      29 ..     127     152 ..     124     189 .. 0.67
   3 !   24.5   0.2   1.7e-08   2.7e-05      12      66 ..     233     281 ..     230     285 .. 0.94

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 0.00011
   EF-hand_7  12 DtdgdgyldkeellrllrkifqgagegsklsdeelellfkefDtdkdGvisfdEFl 67 
                 D+ g g + k  +++ +r      + g k    e++ +f+ +D dk G++++ E++
  KOO21369.1  98 DSEGKGEIKKIAFRQKVRG-----SLGIKANNSEIDNFFNSMDEDKGGSLDLAELK 148
                 5555555555555555555.....77777777889999999999999999999986 PP

  == domain 2  score: 10.8 bits;  conditional E-value: 0.00032
   EF-hand_7   4 lkeaFkelDtdgdgyldkeellrllr 29 
                 +   F+++D d+ g+ld +el+ +l+
  KOO21369.1 127 IDNFFNSMDEDKGGSLDLAELKPALK 152
                 55567777777777777777776555 PP

  == domain 3  score: 24.5 bits;  conditional E-value: 1.7e-08
   EF-hand_7  12 DtdgdgyldkeellrllrkifqgagegsklsdeelellfkefDtdkdGvisfdEF 66 
                 D  +dg++dk e+++ ++      + g+k sd+e+++lf+ +D d+ G++   E+
  KOO21369.1 233 DPSNDGSVDKKEFRENVK------ELGVKASDDEIDALFDSLDEDGGGSLGAPEL 281
                 999***********9999......*************************998886 PP

>> EF-hand_5  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.5   0.2    0.0079        13       2      22 ..     128     148 ..     127     151 .. 0.91
   2 !    7.2   0.1    0.0023       3.8      12      23 ..     236     247 ..     235     250 .. 0.88
   3 ?    4.5   0.0     0.016        27       1      23 [.     261     283 ..     261     286 .. 0.87

  Alignments for each domain:
  == domain 1  score: 5.5 bits;  conditional E-value: 0.0079
                 HHHHHHH-SS-SSCE-HHHHH CS
   EF-hand_5   2 kdtFqaiDlNgDGkIskeELk 22 
                 + +F+ +D ++ G ++  ELk
  KOO21369.1 128 DNFFNSMDEDKGGSLDLAELK 148
                 558****************97 PP

  == domain 2  score: 7.2 bits;  conditional E-value: 0.0023
                 -SSCE-HHHHHH CS
   EF-hand_5  12 gDGkIskeELkt 23 
                 +DG ++k E+++
  KOO21369.1 236 NDGSVDKKEFRE 247
                 7*********97 PP

  == domain 3  score: 4.5 bits;  conditional E-value: 0.016
                 HHHHHHHH-SS-SSCE-HHHHHH CS
   EF-hand_5   1 lkdtFqaiDlNgDGkIskeELkt 23 
                 ++++F+ +D +g G + + ELk 
  KOO21369.1 261 IDALFDSLDEDGGGSLGAPELKL 283
                 6789**********999999985 PP

>> p25-alpha  p25-alpha
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.2   0.00024      0.39      38     108 ..     121     191 ..     106     202 .. 0.79
   2 ?    0.5   0.0      0.38   6.2e+02      19      73 ..     239     290 ..     221     315 .. 0.68

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00024
   p25-alpha  38 kvtstdvDiiFsKvkaksarkitfeqfkealeelaekkfkkkkkeeeleliekliegkgPklqgvtkatka 108
                 k ++ ++D +F+ + + +  ++++++ k al+ l ++++  + + e+l+   + + +k+ +++ + kat+a
  KOO21369.1 121 KANNSEIDNFFNSMDEDKGGSLDLAELKPALKFLLDSAYDAEAEAEALRRRAEECRAKAAQIEEAAKATEA 191
                 567889*********************************99999999955555555554444444444433 PP

  == domain 2  score: 0.5 bits;  conditional E-value: 0.38
   p25-alpha  19 emdnknfsKlckDckiidkkvtstdvDiiFsKvkaksarkitfeqfkealeelae 73 
                  +d+k+f   +k+ ++   k    ++D +F    + +  ++   + k al +l++
  KOO21369.1 239 SVDKKEFRENVKELGV---KASDDEIDALFDSLDEDGGGSLGAPELKLALVNLMN 290
                 4566666666666666...556666777776666666666666666666665555 PP

>> Armet  Degradation arginine-rich protein for mis-folding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.9   0.0     0.058        95     107     136 ..      86     115 ..      48     121 .. 0.85
   2 ?    8.4   0.1    0.0012       1.9     108     141 ..     220     255 ..     162     259 .. 0.76

  Alignments for each domain:
  == domain 1  score: 2.9 bits;  conditional E-value: 0.058
       Armet 107 kvkeLkkiledWgeeCkgCieksdfikrie 136
                 k  ++ ++l+dW+ e kg i k  f ++++
  KOO21369.1  86 KGMKIPELLRDWDSEGKGEIKKIAFRQKVR 115
                 44455578**************99988775 PP

  == domain 2  score: 8.4 bits;  conditional E-value: 0.0012
       Armet 108 vkeLk..kiledWgeeCkgCieksdfikrieelkpk 141
                  ++Lk   i+ +W+ + +g ++k++f + ++el  k
  KOO21369.1 220 SRNLKvsDIIIKWDPSNDGSVDKKEFRENVKELGVK 255
                 344442279***********************9766 PP

>> DDE_Tnp_1_2  Transposase DDE domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.1   0.00034      0.56       3      45 ..     155     200 ..     153     206 .. 0.83
   2 ?   -1.4   0.0       1.9   3.1e+03      10      24 ..     243     257 ..     237     261 .. 0.87

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00034
  DDE_Tnp_1_2   3 aDrgYrsralrealker..gIrasipplgrpakn.kaapkkqared 45 
                  +D++Y+++a +eal++r  ++ra+ +++++ ak  +aa+k+ a ++
   KOO21369.1 155 LDSAYDAEAEAEALRRRaeECRAKAAQIEEAAKAtEAAEKAEASVV 200
                  79****************9*************97666666555444 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 1.9
  DDE_Tnp_1_2  10 ralrealkergIras 24 
                  +++re +ke+g++as
   KOO21369.1 243 KEFRENVKELGVKAS 257
                  799********9987 PP

>> Bact_lectin  Bacterial lectin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   9.8e-05      0.16      79     151 ..     138     241 ..      96     277 .. 0.73

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 9.8e-05
                  SGGGTTTTTSTT-EEEEEE-S--.....................SS-EEEEEEE.............-TT-........................... CS
  Bact_lectin  79 sGgglGigglpnafgfklDtyyN...................kagkpygafvktdangsletvkss.ssks........................... 129
                  +Gg+l ++ l++a+ f lD  y+                   +                    + +  + +                           
   KOO21369.1 138 KGGSLDLAELKPALKFLLDSAYDaeaeaealrrraeecrakaA--------------------QIEeAA-Kateaaekaeasvvelksaitgppavql 214
                  6**********************66666666665544333320....................222211.1223344445556677777888899999 PP

                  .....-SSS--EEEEEEE..-TTTEEE CS
  Bact_lectin 130 .....ledgkwhpitisYdastkttvt 151
                         + k  +i i++d+s++ +v+
   KOO21369.1 215 gkiitSRNLKVSDIIIKWDPSNDGSVD 241
                  9999966888***********996443 PP

>> Med9  RNA polymerase II transcription mediator complex subunit 9
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.1         2   3.2e+03      14      31 ..      36      52 ..      33      62 .. 0.62
   2 ?   10.3   0.1   0.00035      0.57      19      56 ..     156     193 ..     131     207 .. 0.81
   3 ?    0.3   0.0      0.47   7.6e+02      37      55 ..     291     309 ..     283     319 .. 0.52

  Alignments for each domain:
  == domain 1  score: -1.7 bits;  conditional E-value: 2
        Med9 14 ekdpnlsskdletktgel 31
                +kd+   +kd+++++ + 
  KOO21369.1 36 KKDK-EKPKDVSSAVLFQ 52
                6777.8888888887643 PP

  == domain 2  score: 10.3 bits;  conditional E-value: 0.00035
        Med9  19 lsskdletktgelrhkLkkarelirelpgidrsveeqe 56 
                  s+ d e+++ +lr + +++r+  +++++  + +e  e
  KOO21369.1 156 DSAYDAEAEAEALRRRAEECRAKAAQIEEAAKATEAAE 193
                 57899***********************9666665544 PP

  == domain 3  score: 0.3 bits;  conditional E-value: 0.47
        Med9  37 karelirelpgidrsveeq 55 
                  a++++ ++ +i+ s +  
  KOO21369.1 291 DAKAAVLQVADIEASAHAL 309
                 4555555555555554333 PP

>> EspA  EspA-like secreted protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.7   0.0      0.25   4.1e+02     106     137 ..      86     118 ..      79     119 .. 0.84
   2 ?    7.2   0.1    0.0025       4.1     102     139 ..     119     157 ..     113     166 .. 0.82
   3 ?    3.9   0.1     0.027        43      83     140 ..     233     291 ..     224     301 .. 0.77

  Alignments for each domain:
  == domain 1  score: 0.7 bits;  conditional E-value: 0.25
        EspA 106 enktiddylkkngqvGegkldkgdL.tavkasL 137
                 ++++i ++l++  ++G+g+++k    ++v++sL
  KOO21369.1  86 KGMKIPELLRDWDSEGKGEIKKIAFrQKVRGSL 118
                 5899****************9988734677776 PP

  == domain 2  score: 7.2 bits;  conditional E-value: 0.0025
        EspA 102 gIlvenktiddylkkngqvGegkldkgdLt.avkasLes 139
                 gI+ +n++id++++++ ++  g ld ++L+ a+k  L+s
  KOO21369.1 119 GIKANNSEIDNFFNSMDEDKGGSLDLAELKpALKFLLDS 157
                 899***************888889999997455655555 PP

  == domain 3  score: 3.9 bits;  conditional E-value: 0.027
        EspA  83 dpkskeelpp.dVieYlrengIlvenktiddylkkngqvGegkldkgdLtavkasLesd 140
                 dp + +++ + +  e ++e g++ ++++id ++++  ++G g l   +L+     L +d
  KOO21369.1 233 DPSNDGSVDKkEFRENVKELGVKASDDEIDALFDSLDEDGGGSLGAPELKLALVNLMND 291
                 55555555431455778999**********************99999998766666555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (320 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1347  (0.0751297); expected 358.6 (0.02)
Passed bias filter:                      683  (0.0380947); expected 358.6 (0.02)
Passed Vit filter:                        67  (0.00373696); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.52u 0.30s 00:00:00.82 Elapsed: 00:00:00.44
# Mc/sec: 2198.85
//
Query:       KOO21370.1  [L=701]
Description: voltage-gated ion channel superfamily [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
      4e-18   65.5   4.7    6.8e-18   64.8   4.7    1.3  1  Ion_trans    Ion transport protein
    6.6e-06   26.0   7.2    6.6e-06   26.0   7.2    2.1  2  Ion_trans_2  Ion channel


Domain annotation for each model (and alignments):
>> Ion_trans  Ion transport protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.8   4.7   7.6e-22   6.8e-18       3     230 ..      45     335 ..      43     340 .. 0.78

  Alignments for each domain:
  == domain 1  score: 64.8 bits;  conditional E-value: 7.6e-22
                 HHHHHHHHHHHHHHHHHHCCCSSSSHHHHC....HHHHHHHHHHHHHHHHHHHHHHHHHTH...............HHHHHHCHSHHHHHHHHHHHHHH CS
   Ion_trans   3 vfelfilllillncvflaletyfpedelek....tileilelvftaiftlemllkilalgl...............likkrYlrdpwnilDflvvlpsl 82 
                 +++l + l +++++++ ++e +f   ++++    + l+ ++ v++ +f++++ l+++ ++                +i+++Yl + w+++D++++++s+
  KOO21370.1  45 YWDLAMGLALIYTAMATPVEVAFLVPQTDDsrwqDGLFLCNRVVDLVFIWDLHLQFRIAFKsesaeegirwhtrprEIARHYLLSSWFCVDVFSIFTSI 143
                 89********************999777778899***********************97778999********************************** PP

                 HHH..HHHH..HHHHHHHHHHHHGGGGGGHHH......CHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCC............ CS
   Ion_trans  83 lsl..vlse..esllllsvlrlfrvlrllkli......srleglrtlvtalirsvkdllnvlllllvvlfifaligvqlfkgklrek............ 159
                 ++l  v     e +++l+v+r++r+ +l++l       +r+e    + +a + +  +++ ++l +++++++++l +     +++ ++            
  KOO21370.1 144 FDLgvV--GgtEGVFALRVVRILRLTKLVRLAlssrifKRWELSVSINYAYLSMGTTMVAIFLGCHWMACVWGLQASFAPLESWPRSkaycvpwghpde 240
                 *99642..33466777777777777777776666655588888777999*************************9977777777766788888887777 PP

                 .........................CCSCCSTSSSTTTSSSSSS....................HHHHHHHHHHHHTTSSHHHHHHHHHHHSHHHHHHH CS
   Ion_trans 160 .........................necaktwenpnngntnFdn....................fftallwlfrlmttegwgdilyatldekskvaliy 213
                                          +                                      + ++l++++ ++t++g+gdi++++ +        +
  KOO21370.1 241 ataramlatncsaiasavhrradhcE-----------------IgtctggvcsggfscvdawsmYAYSLYFSVMTITSVGYGDITATPFNPT----EQV 318
                 77776666555555555444333330.................133333333344444444555********************99887765....336 PP

                 HHHHHHHHHHHHHHHHH CS
   Ion_trans 214 fvifiilgsflllNlli 230
                  ++ i+lgs +l  +li
  KOO21370.1 319 IASAIMLGSGMLWGYLI 335
                 66666666655555555 PP

>> Ion_trans_2  Ion channel
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.4      0.56     5e+03      57      70 ..     191     204 ..     185     213 .. 0.61
   2 !   26.0   7.2   7.4e-10   6.6e-06      13      73 ..     278     338 ..     269     342 .. 0.80

  Alignments for each domain:
  == domain 1  score: -2.5 bits;  conditional E-value: 0.56
                  HHHHHHHHHHHHHH CS
  Ion_trans_2  57 vyillGlalfalfl 70 
                  +y+ +G +++a+fl
   KOO21370.1 191 AYLSMGTTMVAIFL 204
                  55556666666555 PP

  == domain 2  score: 26.0 bits;  conditional E-value: 7.4e-10
                  HHHT....T---HHH.HHHHHHHHHTTS----SSTT..-----HHHHHHHHHHHHHHHHHHHHH CS
  Ion_trans_2  13 iysleegwekwsfld.alYfsfvtltTiGYGdivpe..tdagrlftivyillGlalfalflavl 73 
                   +s+   +  ws    +lYfs++t+t++GYGdi+++  +++ ++++ +++l   +l ++++ ++
   KOO21370.1 278 GFSC---VDAWSMYAySLYFSVMTITSVGYGDITATpfNPTEQVIASAIMLGSGMLWGYLIGTF 338
                  5666...555688877*****************6665488899999999999999988888765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (701 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       433  (0.0241508); expected 358.6 (0.02)
Passed bias filter:                      303  (0.0169); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.58u 0.28s 00:00:00.86 Elapsed: 00:00:00.44
# Mc/sec: 4756.13
//
Query:       KOO21371.1  [L=130]
Description: hypothetical protein Ctob_004044, partial [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (130 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       488  (0.0272185); expected 358.6 (0.02)
Passed bias filter:                      285  (0.015896); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.26s 00:00:00.64 Elapsed: 00:00:00.42
# Mc/sec: 922.87
//
Query:       KOO21372.1  [L=520]
Description: hypothetical protein Ctob_004045 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.7e-11   42.0   0.0    0.00018   21.2   0.0    2.7  2  EF-hand_6   EF-hand domain
      4e-11   41.6   0.0    0.00041   19.7   0.0    2.7  2  EF-hand_1   EF hand
    4.6e-08   32.8   0.0     0.0041   16.9   0.0    2.4  2  EF-hand_8   EF-hand domain pair
    2.9e-07   29.7   0.0     0.0003   20.2   0.0    2.5  2  EF-hand_5   EF hand
    3.8e-07   30.5   0.0    1.3e-06   28.7   0.0    1.9  1  EF-hand_7   EF-hand domain pair
    0.00038   21.0   4.5        1.5    9.7   0.1    5.1  5  Sel1        Sel1 repeat
  ------ inclusion threshold ------
      0.024   14.3   0.1       0.05   13.3   0.1    1.5  1  Fis1_TPR_N  Fis1 N-terminal tetratricopeptide repeat
      0.069   13.0   0.1       0.24   11.3   0.1    1.9  2  EF-hand_10  EF hand


Domain annotation for each model (and alignments):
>> EF-hand_6  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.2   0.0     8e-08   0.00018       2      28 ..      42      68 ..      41      73 .. 0.90
   2 !   17.8   0.0   9.8e-07    0.0022       5      27 ..     114     136 ..     111     139 .. 0.93

  Alignments for each domain:
  == domain 1  score: 21.2 bits;  conditional E-value: 8e-08
   EF-hand_6  2 lreaFklfDkdgdGkidaeElrkalrk 28
                +r+aFk++D +++G ++ eEl++ + k
  KOO21372.1 42 VRHAFKQMDLNRSGGLTLEELKAGMAK 68
                79*********************9986 PP

  == domain 2  score: 17.8 bits;  conditional E-value: 9.8e-07
   EF-hand_6   5 aFklfDkdgdGkidaeElrkalr 27 
                 +F++fDk+++G +  +E+  al+
  KOO21372.1 114 LFRHFDKNNNGVLELAEVHEALK 136
                 8********************98 PP

>> EF-hand_1  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.7   0.0   1.8e-07   0.00041       2      28 ..      42      68 ..      41      69 .. 0.93
   2 !   19.2   0.0   2.6e-07   0.00058       3      27 ..     112     136 ..     110     138 .. 0.91

  Alignments for each domain:
  == domain 1  score: 19.7 bits;  conditional E-value: 1.8e-07
                HHHHHHHHTTTSSSEEEHHHHHHHHHH CS
   EF-hand_1  2 lkeiFrefDkDgdGkIdfeEfkellkk 28
                ++ +F+ +D +++G +++eE+k+ ++k
  KOO21372.1 42 VRHAFKQMDLNRSGGLTLEELKAGMAK 68
                6789********************986 PP

  == domain 2  score: 19.2 bits;  conditional E-value: 2.6e-07
                 HHHHHHHTTTSSSEEEHHHHHHHHH CS
   EF-hand_1   3 keiFrefDkDgdGkIdfeEfkellk 27 
                 + +Fr+fDk+++G +++ E  e+lk
  KOO21372.1 112 EVLFRHFDKNNNGVLELAEVHEALK 136
                 568*****************99997 PP

>> EF-hand_8  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.3   0.0   2.5e-05     0.055      28      54 ..      42      68 ..      38      69 .. 0.91
   2 !   16.9   0.0   1.8e-06    0.0041      23      52 ..     106     135 ..      98     136 .. 0.86

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 2.5e-05
   EF-hand_8 28 vdilfrefDtdgdGkisfeEFcvller 54
                v++ f+ +D++++G +++eE  + +++
  KOO21372.1 42 VRHAFKQMDLNRSGGLTLEELKAGMAK 68
                8999*****************998876 PP

  == domain 2  score: 16.9 bits;  conditional E-value: 1.8e-06
   EF-hand_8  23 lseeevdilfrefDtdgdGkisfeEFcvll 52 
                 +s + +++lfr+fD +++G++ + E ++ l
  KOO21372.1 106 FSRYYCEVLFRHFDKNNNGVLELAEVHEAL 135
                 78888********************99876 PP

>> EF-hand_5  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.2   0.0   1.3e-07    0.0003       2      23 ..      43      64 ..      42      67 .. 0.89
   2 !    7.0   0.0    0.0019       4.2       4      20 ..     114     130 ..     112     136 .. 0.87

  Alignments for each domain:
  == domain 1  score: 20.2 bits;  conditional E-value: 1.3e-07
                HHHHHHH-SS-SSCE-HHHHHH CS
   EF-hand_5  2 kdtFqaiDlNgDGkIskeELkt 23
                +++F+++DlN++G ++ eELk+
  KOO21372.1 43 RHAFKQMDLNRSGGLTLEELKA 64
                568*****************97 PP

  == domain 2  score: 7.0 bits;  conditional E-value: 0.0019
                 HHHHH-SS-SSCE-HHH CS
   EF-hand_5   4 tFqaiDlNgDGkIskeE 20 
                 +F+ +D+N+ G +   E
  KOO21372.1 114 LFRHFDKNNNGVLELAE 130
                 6999********99887 PP

>> EF-hand_7  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.7   0.0   5.9e-10   1.3e-06       4      70 ..      42     135 ..      40     136 .. 0.85

  Alignments for each domain:
  == domain 1  score: 28.7 bits;  conditional E-value: 5.9e-10
   EF-hand_7   4 lkeaFkelDtdgdgyldkeellr..............llrkifqga.............gegsklsdeelellfkefDtdkdGvisfdEFlkly 70 
                 ++ aFk++D +++g l+ eel+               +++++  ++              +++++s+   e lf+ fD++++Gv+ + E +++ 
  KOO21372.1  42 VRHAFKQMDLNRSGGLTLEELKAgmakelgveelaphVFQAMEYQFlahaddredgvkvLTAKVFSRYYCEVLFRHFDKNNNGVLELAEVHEAL 135
                 5789*******************9888888888877744444444477789998999999999999999********************98875 PP

>> Sel1  Sel1 repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.0   0.1      0.08   1.8e+02       7      38 .]     283     313 ..     277     313 .. 0.89
   2 ?   -0.0   0.0      0.73   1.6e+03       3      25 ..     316     336 ..     314     348 .. 0.79
   3 !    9.7   0.1   0.00065       1.5       3      37 ..     352     385 ..     350     386 .. 0.89
   4 ?    5.0   0.0     0.018        41       3      28 ..     389     412 ..     387     417 .. 0.91
   5 ?   -1.6   0.0       2.3   5.1e+03      25      31 ..     429     435 ..     423     449 .. 0.75

  Alignments for each domain:
  == domain 1  score: 3.0 bits;  conditional E-value: 0.08
        Sel1   7 LGmfylylnGlg.vpkDpekAiewyekAAeqGd 38 
                 LG  +l++ G g    D +   +w   +A+qG+
  KOO21372.1 283 LG--LLLFSGVGgCSSDLRASAKWHAASAAQGN 313
                 89..777999966******************97 PP

  == domain 2  score: -0.0 bits;  conditional E-value: 0.73
        Sel1   3 AmyrLGmfylylnGlgvpkDpek 25 
                 A++ LG   +   G gv++D+  
  KOO21372.1 316 ALAVLG--GCIRRGSGVEQDEAM 336
                 667788..77799******9765 PP

  == domain 3  score: 9.7 bits;  conditional E-value: 0.00065
        Sel1   3 AmyrLGmfylylnGl.gvpkDpekAiewyekAAeqG 37 
                  +++LG   ++++G+ g  +D   A +++e AA+q 
  KOO21372.1 352 GLCKLG--VMLDEGQcGMTQDSWAAARCFEAAAAQA 385
                 5789**..777****99*****************96 PP

  == domain 4  score: 5.0 bits;  conditional E-value: 0.018
        Sel1   3 AmyrLGmfylylnGlgvpkDpekAie 28 
                  +++ G   ++ +G gv +D++++ie
  KOO21372.1 389 GQFNWG--WALVHGIGVRRDVRRGIE 412
                 7999**..999***********9986 PP

  == domain 5  score: -1.6 bits;  conditional E-value: 2.3
        Sel1  25 kAiewye 31 
                  A+++ye
  KOO21372.1 429 AAFYLYE 435
                 5777776 PP

>> Fis1_TPR_N  Fis1 N-terminal tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.1   2.2e-05      0.05       3      24 ..     390     412 ..     390     413 .. 0.92

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 2.2e-05
  Fis1_TPR_N   3 kFnYAWgLvkS.knredqqeGia 24 
                 +Fn +W+Lv+   +r d+++Gi+
  KOO21372.1 390 QFNWGWALVHGiGVRRDVRRGIE 412
                 9**********77888******7 PP

>> EF-hand_10  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.0         2   4.6e+03      27      44 ..      46      63 ..      43      64 .. 0.78
   2 ?   11.3   0.1    0.0001      0.24      21      48 ..     109     136 ..     106     138 .. 0.87

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 2
  EF-hand_10 27 FkkcDkSksgrLegeEie 44
                Fk+ D  +sg L  eE++
  KOO21372.1 46 FKQMDLNRSGGLTLEELK 63
                899999999988888865 PP

  == domain 2  score: 11.3 bits;  conditional E-value: 0.0001
  EF-hand_10  21 eYAekLFkkcDkSksgrLegeEieeFyk 48 
                  Y e LF++ Dk ++g Le  E+ e +k
  KOO21372.1 109 YYCEVLFRHFDKNNNGVLELAEVHEALK 136
                 699*******************988665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (520 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       528  (0.0294495); expected 358.6 (0.02)
Passed bias filter:                      438  (0.0244297); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.53u 0.23s 00:00:00.76 Elapsed: 00:00:00.40
# Mc/sec: 3948.75
//
Query:       KOO21373.1  [L=595]
Description: hypothetical protein Ctob_004039 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (595 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       598  (0.0333538); expected 358.6 (0.02)
Passed bias filter:                      331  (0.0184617); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.52u 0.23s 00:00:00.75 Elapsed: 00:00:00.38
# Mc/sec: 4656.99
//
Query:       KOO21374.1  [L=502]
Description: primary ciliary dyskinesia protein 1-like protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.4e-06   27.6   0.0     0.0011   19.1   0.0    2.3  2  ASH        Abnormal spindle-like microcephaly-assoc'd, ASPM-S
    0.00012   22.1   0.0     0.0029   17.7   0.0    2.6  3  PapD-like  Flagellar-associated PapD-like


Domain annotation for each model (and alignments):
>> ASH  Abnormal spindle-like microcephaly-assoc'd, ASPM-SPD-2-Hydin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.2   0.0    0.0013        11      11      88 ..      67     145 ..      62     150 .. 0.80
   2 !   19.1   0.0   1.3e-07    0.0011      11      81 ..     171     240 ..     164     249 .. 0.88

  Alignments for each domain:
  == domain 1  score: 6.2 bits;  conditional E-value: 0.0013
                 -EEEEE-----EEEEE..EE-EEESS-SS--EEEEEEEE--XXXXXXXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
         ASH  11 kpfvsFgdvkvGssae..rlLtveNpseepaevkvskvpaaekgfsveete.levqpgesvtltvtwtPteegavrevLqf 88 
                 ++ + F  +++G   +  ++L++ N s +p+++    +p+++  f+++ ++  ++ pg    ++v ++P+e    ++++++
  KOO21374.1  67 PAALHFAGIEIGAGGSlvQKLRLINSSGHPIRMH--VLPPSTPFFTISFEKkGRLMPGLAEEIMVRFAPNEVRYYHDTIKV 145
                 5677888888877555226699999999885555..5777788999999999******************99888888876 PP

  == domain 2  score: 19.1 bits;  conditional E-value: 1.3e-07
                 -EEEEE-----EEEEEEE-EEESS-SS--EEEEEEEE--XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
         ASH  11 kpfvsFgdvkvGssaerlLtveNpseepaevkvskvpaaekgfsveetelevqpgesvtltvtwtPteega 81 
                 +++v+Fg v+ G+s+er L ++ p+ ++ e  ++   ++   f +++++  v++ ++  + vt+tP+   +
  KOO21374.1 171 PARVDFGIVAQGQSRERVLPLHSPDGAEFEWRIEVR-QPHADFVIQPRSGIVPARGEAAIVVTFTPSRLAT 240
                 689***********************9999988755.5****************************98755 PP

>> PapD-like  Flagellar-associated PapD-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.7   0.0   3.3e-07    0.0029       5      71 ..      64     131 ..      60     145 .. 0.84
   2 ?    0.9   0.0     0.055     5e+02       7      22 ..     170     185 ..     167     211 .. 0.80
   3 ?   -2.3   0.0      0.54   4.9e+03      73      92 ..     411     430 ..     396     434 .. 0.71

  Alignments for each domain:
  == domain 1  score: 17.7 bits;  conditional E-value: 3.3e-07
   PapD-like   5 evsPakveFGkvl..pgnryvltvellnvstvpcRyrvrlpavvkkllsveYk.rqFvaPGltvklkvel 71 
                  ++Pa ++F +++   g   v+ ++l+n s  p R +v  p+   ++++++++ ++ + PGl+ ++ v  
  KOO21374.1  64 RAEPAALHFAGIEigAGGSLVQKLRLINSSGHPIRMHVLPPS--TPFFTISFEkKGRLMPGLAEEIMVRF 131
                 578******98872256789******************8887..8999999961568********99976 PP

  == domain 2  score: 0.9 bits;  conditional E-value: 0.055
   PapD-like   7 sPakveFGkvlpgnry 22 
                  Pa+v+FG v +g+  
  KOO21374.1 170 FPARVDFGIVAQGQSR 185
                 59********998754 PP

  == domain 3  score: -2.3 bits;  conditional E-value: 0.54
   PapD-like  73 gaqplGemdselsvvheggi 92 
                   qp+   +s+l v+ e++ 
  KOO21374.1 411 LQQPYKMRVSDLRVAIEEQQ 430
                 36888888999999999886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (502 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       442  (0.0246528); expected 358.6 (0.02)
Passed bias filter:                      360  (0.0200792); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.52u 0.24s 00:00:00.76 Elapsed: 00:00:00.41
# Mc/sec: 3666.18
//
Query:       KOO21375.1  [L=544]
Description: eukaryotic translation initiation factor 3 subunit l-like protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
     7e-152  506.1   0.0   9.7e-152  505.6   0.0    1.2  1  Paf67       RNA polymerase I-associated factor PAF67
  ------ inclusion threshold ------
      0.057   13.6   0.0       0.23   11.6   0.0    2.0  1  TPR_2       Tetratricopeptide repeat
      0.068   13.4   0.3        0.2   11.9   0.0    1.9  2  NusB        NusB family
       0.11   12.4   0.1        0.3   11.0   0.0    1.9  2  TPR_1       Tetratricopeptide repeat
       0.11   12.0   0.1       0.32   10.5   0.0    1.8  2  MscS_porin  Mechanosensitive ion channel porin domain


Domain annotation for each model (and alignments):
>> Paf67  RNA polymerase I-associated factor PAF67
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  505.6   0.0  2.7e-155  9.7e-152       1     404 [.     133     535 ..     133     536 .. 0.96

  Alignments for each domain:
  == domain 1  score: 505.6 bits;  conditional E-value: 2.7e-155
       Paf67   1 drveSwenYceLfnlllnesespveleLpnqWlwDiidEFvYQFqsfcqyrsklkkkseeelkalkeensqvwsvesvlnvLhslvqkskineqleaek 99 
                 +r+eSw nYc++f+lll+ +++p  leLpnqWlwD+idEF+YQFq+f qyr++ ++++e+el+ l +e +++wsv +vl++L++l++ks+i+ +l+ e 
  KOO21375.1 133 HRIESWRNYCAIFDLLLD-AKTPLALELPNQWLWDMIDEFIYQFQTFWQYRARPRSRTEDELARL-KEMPETWSVLKVLHYLQALIDKSHIRAHLRGE- 228
                 69****************.888*******************************************.7779*************************986. PP

       Paf67 100 egkeeeevagefgssplykmLgyFsligllrvhvllGdYttalkvlenidlskka.....llskvpaahvsllYyvGfaylmlrrYkDAirtlsqilly 193
                     +++v + f +s+ly mLgyFsl+gllrvh+ll dY++alkv+e+idl +k      l+++v+ +h++++YyvG++ylmlrrY+DAi+t+s+il y
  KOO21375.1 229 ----PSAVGNPFVASSLYTMLGYFSLVGLLRVHCLLADYRLALKVVEDIDLARKGpaphgLFTRVTLCHITIFYYVGWCYLMLRRYTDAIKTFSNILFY 323
                 ....666999******************************************99888888*************************************** PP

       Paf67 194 isrtkqyqsrsyqsdqinkqadrmyaLlaiclalsp.skldesilqqlkekyseklsklqk..edeeafeelFskacPkfispaapdledaeaeedans 289
                 i+rtkqy++rsyq+dqi k++d+myaLla++ +lsp + lde++ ++l++ky++++s++q+   d++ fe+lF++acPkfisp++p+l+d+ +++++ +
  KOO21375.1 324 IARTKQYHTRSYQYDQILKKNDQMYALLAVAASLSPqHALDENLVSTLRDKYADRMSRMQSnvVDLACFEDLFTFACPKFISPVPPPLDDEGKTSEKYN 422
                 ************************************889**********************666789***********************987766555 PP

       Paf67 290 ekealkrqlklFlkevkqqkklptlrsylkLYttislekLasllevdeeelrsqLlslkhksrqlkwkkgsaslldgesvsasdldfyidedmihiaet 388
                  +ea++ ql+lF+ ev+qqk lpt+rsylkLYtti + kLa+l ev+e+++r++L +lkhk+++l+w  g    l+g++ s++++df++d+++ h+a+t
  KOO21375.1 423 PQEAFRLQLRLFMVEVAQQKLLPTIRSYLKLYTTIGIPKLAALTEVEEATFREHLQCLKHKTHTLSWAGG--APLTGSWASSAEVDFFVDGEVAHVADT 519
                 5******************************************************************996..899************************ PP

       Paf67 389 kvqrrygdyFlkqiek 404
                    r+++dyFlkqi+k
  KOO21375.1 520 SLVRKHSDYFLKQINK 535
                 **************98 PP

>> TPR_2  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   6.5e-05      0.23       4      25 ..     297     318 ..     295     321 .. 0.89

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 6.5e-05
       TPR_2   4 lynlGlayyklgdyeeAleafe 25 
                  y+ G++y+ l +y +A++ f 
  KOO21375.1 297 FYYVGWCYLMLRRYTDAIKTFS 318
                 799****************986 PP

>> NusB  NusB family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   5.6e-05       0.2      32      97 ..     332     397 ..     312     405 .. 0.85
   2 ?   -2.2   0.0       1.3   4.6e+03      42      70 ..     515     543 ..     510     544 .] 0.82

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 5.6e-05
                 T-.......--HHHHHHHHHHHHHHHHTHHHHHHHHHHTTTT--GGGS-HHHHHHHHHHHHHHTTS CS
        NusB  32 lnklleeedldeedkafltelvkgvlrnleelDeliekllknwplerlskvdraiLrlavyellyl 97 
                   + + +++l+++d+ ++   v + l  +  lDe + ++l+++  +r+s++  ++  la++e l++
  KOO21375.1 332 TRSYQYDQILKKNDQMYALLAVAASLSPQHALDENLVSTLRDKYADRMSRMQSNVVDLACFEDLFT 397
                 335567899*****************************************************8886 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 1.3
                 -HHHHHHHHHHHHHHHHTHHHHHHHHHHT CS
        NusB  42 deedkafltelvkgvlrnleelDeliekl 70 
                 + +d +++++  + +l++ ++l+e+i++l
  KOO21375.1 515 HVADTSLVRKHSDYFLKQINKLEEIISTL 543
                 56788888899999999999999999875 PP

>> TPR_1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.1       3.1   1.1e+04      21      29 ..     260     268 ..     260     269 .. 0.75
   2 ?   11.0   0.0   8.3e-05       0.3       3      26 ..     296     319 ..     294     321 .. 0.88

  Alignments for each domain:
  == domain 1  score: -3.5 bits;  conditional E-value: 3.1
                 HHHHHHHHH CS
       TPR_1  21 leyyekALe 29 
                 l++y+ AL+
  KOO21375.1 260 LADYRLALK 268
                 578888887 PP

  == domain 2  score: 11.0 bits;  conditional E-value: 8.3e-05
                 HHHHHHHHHHHTT-HHHHHHHHHH CS
       TPR_1   3 alynlGnayfklgkydeAleyyek 26 
                 ++y  G +y+ l +y +A++ ++ 
  KOO21375.1 296 IFYYVGWCYLMLRRYTDAIKTFSN 319
                 57999***************9975 PP

>> MscS_porin  Mechanosensitive ion channel porin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.0     9e-05      0.32      19     107 ..     307     395 ..     305     399 .. 0.93
   2 ?   -2.0   0.0      0.59   2.1e+03     179     203 ..     519     543 ..     517     544 .] 0.85

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 9e-05
  MscS_porin  19 lqdLeqalnlLdkidkskkkaeelqkaiddaPkelrelqqelealqkkkeeaskeilaklsleeLeqrllqtssqlqelqeqlaqlnsq 107
                 l  +++a++   +i  + +++++++++  ++ + l++  q  + l+ +++ +++  l++   ++L  +++++ s++q++  +la ++++
  KOO21375.1 307 LRRYTDAIKTFSNILFYIARTKQYHTRSYQYDQILKKNDQMYALLAVAASLSPQHALDENLVSTLRDKYADRMSRMQSNVVDLACFEDL 395
                 567999***********************************************************************999999877776 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 0.59
  MscS_porin 179 qeLlklqrdllklriqqleqelqaL 203
                 ++L ++  d+  ++i++le+ +++L
  KOO21375.1 519 TSLVRKHSDYFLKQINKLEEIISTL 543
                 5788999999999999999988887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (544 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       459  (0.025601); expected 358.6 (0.02)
Passed bias filter:                      343  (0.019131); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.55u 0.25s 00:00:00.80 Elapsed: 00:00:00.43
# Mc/sec: 3807.52
//
Query:       KOO21376.1  [L=454]
Description: myosin light chain kinase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.5e-47  161.0   0.0    1.9e-46  158.5   0.0    1.9  1  Pkinase         Protein kinase domain
    3.9e-20   72.2   0.0    5.8e-20   71.7   0.0    1.2  1  Pkinase_Tyr     Protein tyrosine kinase
    2.2e-18   66.0   0.3    4.1e-18   65.1   0.3    1.5  1  ATP-synt_Eps    Mitochondrial ATP synthase epsilon chain
     0.0015   17.9   0.0     0.0025   17.2   0.0    1.4  1  Kinase-like     Kinase-like
  ------ inclusion threshold ------
      0.011   15.1   0.0      0.019   14.3   0.0    1.4  1  Kdo             Lipopolysaccharide kinase (Kdo/WaaP) family
       0.11   12.1   0.0         12    5.4   0.0    2.4  2  FTA2            Kinetochore Sim4 complex subunit FTA2
       0.13   11.0   0.0       0.26   10.0   0.0    1.4  1  Pkinase_fungal  Fungal protein kinase


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  158.5   0.0   7.6e-50   1.9e-46       1     263 [.      39     346 ..      39     347 .. 0.84

  Alignments for each domain:
  == domain 1  score: 158.5 bits;  conditional E-value: 7.6e-50
                 EEEEEEEEEESSEEEEEEEETTT..............TEEEEEEEEECHCHCHHHH.HHHHHHHHHHHHHSCTTB--EEEEEEESSEEEEEEE--TTEB CS
     Pkinase   1 yekleklGeGsfGkVykaveket..............gkivAvKkikkekakkkke.kkvlrEikilkklkhpnivrlyevfeekdelylvleyvegge 84 
                 ye le++G+G++++Vy a++++t               ++vA+K++++e+ ++++  ++v +E+++l++++hp+ivrl+ev+ + +++ +v e + gg+
  KOO21376.1  39 YEFLEEIGQGASSQVYLARRRATpsspggahspvidfAREVAIKVFDTEELDDDDVfEAVKTEVEVLRRVRHPYIVRLVEVICDASSFAVVSEALTGGD 137
                 78899**************998744444444444444589*********99998888****************************************** PP

                 HHHHHHHHSS--HHHHHHHHHHHHHHHHHHHHTTEE-SS-SGGGEEEE.TTTE....EEE-SGTTSEESSSSCS......BCTTTSCGGGS-HHHH... CS
     Pkinase  85 ladllerkgslseeeakkiakqilegleylHskgiiHrDlKpeNiLid.ekge....lKitDFGlakelesssk......ltsfvgtseYlAPEvl... 169
                 ++ +l+++g+l+e+ a++++++++ ++e+lHs gi HrDlK eN+     ++e     K++D+G a +   ss       +t    +  Y+APEv    
  KOO21376.1 138 MHARLTEEGALTEDGASEVFARVVLAVEHLHSVGIAHRDLKAENLVALsMDAEfenaYKLVDLGSAFQQPPSSVgtspmrMTGLATSASYCAPEVArsa 236
                 ********************************************9987344446777*********9999988799999999999999********888 PP

                 .......TTSCBSHHHHHHHHHHHHHHHHHSS-STTTSSHH...HHHHHHHHTHHHHHHHCT......SHH...HHHTTS-HHHHHHHHHHT-SSGCCS CS
     Pkinase 170 .......keneyskkvDvWslGvilyelltgkppfsgekgk...ekvekeldqlekilkilg......etkeklpeaseiseeakdllkkllkkdpkkR 252
                        ++  y++++D+WslGv+l+ +l+++ pf+ + ++   e+ e + ++  + ++il+           ++ ++++s +akdl+++ll+ +p++R
  KOO21376.1 237 gygdvegTGAAYGAEADLWSLGVLLFVMLSRRLPFALDPTSvddEDEEGDDEDEGMEAQILErvaagsFIFAPVAAWRSVSADAKDLIRRLLTIEPTRR 335
                 87777666699************************965433100222222222334456666666675334567899999******************* PP

                 TTHHHHHTSGG CS
     Pkinase 253 ltaeellqhpy 263
                 l++e + +hp+
  KOO21376.1 336 LGWEGVRRHPW 346
                 **********9 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   71.7   0.0   2.3e-23   5.8e-20       2     200 ..      40     266 ..      39     277 .. 0.87

  Alignments for each domain:
  == domain 1  score: 71.7 bits;  conditional E-value: 2.3e-23
                  EEEEEEEEESSEEEEEEEEET..........TTTSSEEEEEEEEESTTS.SHHH.HHHHHHHHHHHHTS-BTTB--EEEEEESSSSEEEEEE--TTEB CS
  Pkinase_Tyr   2 elgkklGeGafGkVvegtlkg..........ekekkevkVavKtlkeea.teee.keelleeakimkklkhpnivkllgvctkeepllivteyvkgGd 87 
                  e+ +++G+Ga ++V+ ++ +              +   +Va+K+++ e  ++++  e++ +e++++++++hp iv+l+ v+ ++++  +v e ++gGd
   KOO21376.1  40 EFLEEIGQGASSQVYLARRRAtpsspggahsPVIDFAREVAIKVFDTEElDDDDvFEAVKTEVEVLRRVRHPYIVRLVEVICDASSFAVVSEALTGGD 137
                  57899*************999899888765434456789******6544133334899999************************************* PP

                  HHHHHHHTCTTTSBHHHHHHHHHHHHHHHHHHHHTTEEEST-SGGGEEEEE.....TTEEEE-STTTHEETTTSSEE...EETTSSTSGGGGS-HHHH CS
  Pkinase_Tyr  88 LlkfLrkkekekltlkdllsfalqvAkGmeyLeskklvHrdlaarNvLlse.....nkvvkisDfGLardiekddey...vkkeeaklpvkWmapEsl 177
                  ++  L+++   +lt +   ++ + v  ++e+L+s  + Hrdl a N +  +     ++  k+ D G a +   ++      + ++  ++  ++apE+ 
   KOO21376.1 138 MHARLTEE--GALTEDGASEVFARVVLAVEHLHSVGIAHRDLKAENLVALSmdaefENAYKLVDLGSAFQQPPSSVGtspMRMTGLATSASYCAPEVA 233
                  ******98..9***********************************876666888899********99988444433345777888899********* PP

                  HHSE..........EEHHHHHHHHHHHHHHHHT CS
  Pkinase_Tyr 178 kekk..........ftsksDvWsfGvllwEift 200
                  ++            +  ++D Ws Gvll+ +++
   KOO21376.1 234 RSAGygdvegtgaaYGAEADLWSLGVLLFVMLS 266
                  99888999999**9**************98776 PP

>> ATP-synt_Eps  Mitochondrial ATP synthase epsilon chain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.1   0.3   1.6e-21   4.1e-18       1      49 []     390     438 ..     390     438 .. 0.99

  Alignments for each domain:
  == domain 1  score: 65.1 bits;  conditional E-value: 1.6e-21
                   --TTTTS--HHHHHHHHHHHCCHSS-TTT--CCCCCS----EEEE--TT CS
  ATP-synt_Eps   1 saWRaaglsYnkYsniaAravRraLKeelraaAekreetelkytkwenG 49 
                   s+W+  g++Y+kY+ ++A +vR+aLKe+++++A++++++++++ +w+nG
    KOO21376.1 390 STWKNVGMTYLKYADLCATHVRNALKEPAKTKAMAKSDMHARVMQWTNG 438
                   69**********************************************9 PP

>> Kinase-like  Kinase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   0.0   9.9e-07    0.0025     152     258 ..     159     279 ..     137     335 .. 0.70

  Alignments for each domain:
  == domain 1  score: 17.2 bits;  conditional E-value: 9.9e-07
  Kinase-like 152 qlirlaanLqakglvhgkftvdnll...ldekg..glmlggftaLvragtkvvl.seve.......kgfaPpEllgsrggytrk..nktkmthkldaW 234
                  +++  + +L++ g+ h +++++nl+   +d ++    +l ++++ +++  + v  s +        +++  pE+  s +gy+      + +  + d W
   KOO21376.1 159 RVVLAVEHLHSVGIAHRDLKAENLValsMDAEFenAYKLVDLGSAFQQPPSSVGtSPMRmtglatsASYCAPEVARS-AGYGDVegTGAAYGAEADLW 255
                  4555679999999999999999986433455542245777777766665554432333377788889999****999.5566550155677778899* PP

  Kinase-like 235 qlGlviyriwclklPltlateeak 258
                   lG+  + + ++ lP+ l+   + 
   KOO21376.1 256 SLGVLLFVMLSRRLPFALDPTSVD 279
                  ****************99866655 PP

>> Kdo  Lipopolysaccharide kinase (Kdo/WaaP) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   0.0   7.5e-06     0.019      95     166 ..     129     200 ..     106     210 .. 0.77

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 7.5e-06
         Kdo  95 lterlegaqdLedllakwaelaeelkrallkavgrliaklhragvnHadlyaknillqqee.eeeaeiwliDl 166
                 ++e+l+g  d+ + l++   l e    + + +v  +++ lh++g+ H+dl a n+     + e e    l+Dl
  KOO21376.1 129 VSEALTG-GDMHARLTEEGALTEDGASEVFARVVLAVEHLHSVGIAHRDLKAENLVALSMDaEFENAYKLVDL 200
                 6666666.4677777765558899999999************************7644433244555667777 PP

>> FTA2  Kinetochore Sim4 complex subunit FTA2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.1   0.0     0.012        30      19      42 ..      34      57 ..      28      61 .. 0.84
   2 ?    5.4   0.0    0.0047        12     177     204 ..     156     183 ..     147     204 .. 0.85

  Alignments for each domain:
  == domain 1  score: 4.1 bits;  conditional E-value: 0.012
        FTA2 19 saekdiefleyLgkglhsiVlkvk 42
                + e ++efle +g+g++s+V+ ++
  KOO21376.1 34 DIETRYEFLEEIGQGASSQVYLAR 57
                556799**************9987 PP

  == domain 2  score: 5.4 bits;  conditional E-value: 0.0047
        FTA2 177 qlpkllrdlkklhklgIvvrDlkeenyi 204
                  + +++  ++ lh+ gI +rDlk+en++
  KOO21376.1 156 VFARVVLAVEHLHSVGIAHRDLKAENLV 183
                 5777888899**************9987 PP

>> Pkinase_fungal  Fungal protein kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   0.0    0.0001      0.26     310     366 ..     155     210 ..     147     227 .. 0.86

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.0001
  Pkinase_fungal 310 ealrDaIkghrsLflkagiLHrDiSenNilitdskkegerkglLiDLDlakelsdds 366
                     e+++ ++ + + L+   gi HrD  ++N++ +  + e e+   L+DL  a +    s
      KOO21376.1 155 EVFARVVLAVEHLH-SVGIAHRDLKAENLVALSMDAEFENAYKLVDLGSAFQQPPSS 210
                     688999********.*****************889999*********9999877544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (454 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       366  (0.0204139); expected 358.6 (0.02)
Passed bias filter:                      310  (0.0172904); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.51u 0.29s 00:00:00.80 Elapsed: 00:00:00.45
# Mc/sec: 3044.04
//
Query:       KOO21377.1  [L=110]
Description: sam-dependent methyltransferase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (110 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       348  (0.0194099); expected 358.6 (0.02)
Passed bias filter:                      286  (0.0159518); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.26s 00:00:00.61 Elapsed: 00:00:00.40
# Mc/sec: 834.44
//
Query:       KOO21378.1  [L=131]
Description: hypothetical protein Ctob_004529 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    8.9e-09   34.6   0.1     0.0023   17.7   0.0    2.3  2  EF-hand_6   EF-hand domain
    1.9e-08   34.6   0.4    3.6e-08   33.8   0.4    1.5  1  EF-hand_7   EF-hand domain pair
      6e-08   31.7   0.5      0.004   16.6   0.0    2.2  2  EF-hand_1   EF hand
     0.0017   18.2   0.6     0.0054   16.6   0.2    1.9  2  EF-hand_8   EF-hand domain pair
  ------ inclusion threshold ------
      0.013   15.0   0.2        2.9    7.5   0.1    2.3  2  EF-hand_5   EF hand
      0.019   14.6   0.2      0.022   14.3   0.2    1.1  1  AAA_25      AAA domain
      0.025   15.4   0.1      0.033   15.1   0.1    1.1  1  EF-hand_11  EF-hand domain


Domain annotation for each model (and alignments):
>> EF-hand_6  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.7   0.0   9.1e-07    0.0023       3      27 ..      24      48 ..      22      54 .. 0.90
   2 !   14.8   0.0   7.5e-06     0.019       7      28 ..      66      87 ..      60      97 .. 0.85

  Alignments for each domain:
  == domain 1  score: 17.7 bits;  conditional E-value: 9.1e-07
   EF-hand_6  3 reaFklfDkdgdGkidaeElrkalr 27
                 +aF+l+D+d++++ d +E+r  l+
  KOO21378.1 24 GRAFRLMDVDKSNSCDVKEVREGLT 48
                589******************9998 PP

  == domain 2  score: 14.8 bits;  conditional E-value: 7.5e-06
   EF-hand_6  7 klfDkdgdGkidaeElrkalrk 28
                +l+D++gdG++  +E+ +++++
  KOO21378.1 66 ELMDTSGDGTVRLDEFARFFST 87
                799***************9985 PP

>> EF-hand_7  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.8   0.4   1.4e-11   3.6e-08       3      70 ..      22      85 ..      13      86 .. 0.88

  Alignments for each domain:
  == domain 1  score: 33.8 bits;  conditional E-value: 1.4e-11
   EF-hand_7  3 klkeaFkelDtdgdgyldkeellrllrkifqgagegsklsdeelellfkefDtdkdGvisfdEFlkly 70
                 + +aF+++D+d++++ d+ e+++ l+++       ++++d ++ +l + +Dt++dG++ +dEF +++
  KOO21378.1 22 SMGRAFRLMDVDKSNSCDVKEVREGLTRM----FNLEHIPDAQMNRLAELMDTSGDGTVRLDEFARFF 85
                56789*******************77766....456667899**********************9997 PP

>> EF-hand_1  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   0.0   1.6e-06     0.004       4      29 .]      25      50 ..      23      50 .. 0.93
   2 !   13.6   0.1   1.4e-05     0.036       7      27 ..      66      86 ..      60      88 .. 0.87

  Alignments for each domain:
  == domain 1  score: 16.6 bits;  conditional E-value: 1.6e-06
                HHHHHHTTTSSSEEEHHHHHHHHHHH CS
   EF-hand_1  4 eiFrefDkDgdGkIdfeEfkellkkl 29
                ++Fr++D+D++   d +E +e l+++
  KOO21378.1 25 RAFRLMDVDKSNSCDVKEVREGLTRM 50
                69*******************99975 PP

  == domain 2  score: 13.6 bits;  conditional E-value: 1.4e-05
                HHHTTTSSSEEEHHHHHHHHH CS
   EF-hand_1  7 refDkDgdGkIdfeEfkellk 27
                +++D+ gdG++ ++Ef ++++
  KOO21378.1 66 ELMDTSGDGTVRLDEFARFFS 86
                79***************9986 PP

>> EF-hand_8  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.2   0.0      0.28   7.1e+02      32      47 ..      27      42 ..      26      49 .. 0.79
   2 !   16.6   0.2   2.1e-06    0.0054      14      52 ..      47      85 ..      39      87 .. 0.82

  Alignments for each domain:
  == domain 1  score: 0.2 bits;  conditional E-value: 0.28
   EF-hand_8 32 frefDtdgdGkisfeE 47
                fr++D d+++  + +E
  KOO21378.1 27 FRLMDVDKSNSCDVKE 42
                999****998877666 PP

  == domain 2  score: 16.6 bits;  conditional E-value: 2.1e-06
   EF-hand_8 14 l.rilglkkglseeevdilfrefDtdgdGkisfeEFcvll 52
                l r++ l++ + + ++  l  ++Dt gdG++ ++EF  ++
  KOO21378.1 47 LtRMFNLEH-IPDAQMNRLAELMDTSGDGTVRLDEFARFF 85
                334667786.99999999999***************9876 PP

>> EF-hand_5  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.5   0.0     0.005        13       4      19 ..      26      41 ..      23      47 .. 0.76
   2 ?    7.5   0.1    0.0011       2.9       7      24 ..      67      84 ..      66      85 .. 0.89

  Alignments for each domain:
  == domain 1  score: 5.5 bits;  conditional E-value: 0.005
                HHHHH-SS-SSCE-HH CS
   EF-hand_5  4 tFqaiDlNgDGkIske 19
                +F+ +D++++   ++ 
  KOO21378.1 26 AFRLMDVDKSNSCDVK 41
                5********9765555 PP

  == domain 2  score: 7.5 bits;  conditional E-value: 0.0011
                HH-SS-SSCE-HHHHHHH CS
   EF-hand_5  7 aiDlNgDGkIskeELktl 24
                 +D+ gDG++  +E+ ++
  KOO21378.1 67 LMDTSGDGTVRLDEFARF 84
                58************9986 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   0.2   8.8e-06     0.022      79     165 ..       9      95 ..       3     110 .. 0.75

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 8.8e-06
      AAA_25  79 aEdsedelrrRlravgeal....rddarllvldlagveslpLfakdrggtlltadvdaleaaieevegvrlvviDplsralggdensnsdv 165
                  E+  d l+ R++ +g+a+       ++   +d+++v +  L+ + + +++ +a++++l++ ++   g + v +D ++r+++ d   +s+v
  KOO21378.1   9 HEQLKDKLHTRFKSMGRAFrlmdV--DKSNSCDVKEV-REGLTRMFNLEHIPDAQMNRLAELMDT-SGDGTVRLDEFARFFSTDHRPSSAV 95 
                 5778899*********99977542..44444445444.223444446677899*******99999.89*************9998877776 PP

>> EF-hand_11  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.1   0.1   1.3e-05     0.033      14      91 ..      15      94 ..       7     104 .. 0.86

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 1.3e-05
                HHHHSHHHHHHHHHHH-TT-SSEE-HHHHHHHHHHHT--..--HHHHHHHHHTS-B-TTS-EEHHHHHHHHCS-.----- CS
  EF-hand_11 14 avashyhaivqefenfdtlksntvsreefraictrrvqi..ltdeqfdrlwselpvnakgrlkyqdflsklsiervaatp 91
                 + + ++++ + f  +d  ksn+   +e r   tr  ++  + d q++rl + +     g ++ ++f   +s+++ +++ 
  KOO21378.1 15 KLHTRFKSMGRAFRLMDVDKSNSCDVKEVREGLTRMFNLehIPDAQMNRLAELMDTSGDGTVRLDEFARFFSTDHRPSSA 94
                556678889999**********************976543389*************************999999877764 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (131 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       551  (0.0307323); expected 358.6 (0.02)
Passed bias filter:                      477  (0.0266049); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.37u 0.27s 00:00:00.64 Elapsed: 00:00:00.39
# Mc/sec: 1007.07
//
Query:       KOO21379.1  [L=307]
Description: hypothetical protein Ctob_004528 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    0.00098   18.5   0.0      0.002   17.4   0.0    1.4  1  TylF             Macrocin-O-methyltransferase (TylF)
  ------ inclusion threshold ------
      0.056   14.5   0.0       0.12   13.4   0.0    1.6  1  Methyltransf_24  Methyltransferase domain
      0.075   13.6   8.0       0.12   12.9   8.0    1.3  1  TP2              Nuclear transition protein 2


Domain annotation for each model (and alignments):
>> TylF  Macrocin-O-methyltransferase (TylF)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.4   0.0   3.4e-07     0.002     110     209 ..     187     287 ..     165     301 .. 0.67

  Alignments for each domain:
  == domain 1  score: 17.4 bits;  conditional E-value: 3.4e-07
        TylF 110 edRkvwvaDsFeglPkpdeeklaedagdklkelee..vlavseeevrenFrrygLlddqvrflkGwFkdtLpt..apiekl..al.lRlDgdlyestld 201
                 ++ + w +D++eg+P p++ + + ++++++ +++    l +  ++ r+       ++ +v+ +kG F+d+L    a+   +  al + +D+dl++st+ 
  KOO21379.1 187 TKTRAWAFDTYEGMPLPESGEPTFQTTWRRGQFAGseKLPLLANHLRS------RVQRRVQAIKGRFQDSLVPglAALRGMgpALyVDIDADLFSSTWT 279
                 45678***********98887777777666665540034444444444......45779***********953122222221144489*********** PP

        TylF 202 aleaLYdk 209
                 al+ L+  
  KOO21379.1 280 ALDWLFRE 287
                 ***99964 PP

>> Methyltransf_24  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.0     2e-05      0.12       3     101 ..     171     296 ..     169     298 .. 0.70

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 2e-05
  Methyltransf_24   3 iGvysGvstlwllralrrngagrlvavdhdpg................aeeaaalare...........aglddrvrlikadsee.alasla.. 66 
                       Gv +G+s   ll+ + +++a    a+d+ +g                    +++a +           + +++rv+ ik+++++ ++++la  
       KOO21379.1 171 FGVAEGYSLHSLLQIFTKTRA---WAFDTYEGmplpesgeptfqttwrR---GQFAGSeklpllanhlrSRVQRRVQAIKGRFQDsLVPGLAal 258
                      69***************9987...7888888888888886666554320...33333244555555566899999********99446677777 PP

  Methyltransf_24  67 agsiDllfiDgghaa.eavledleallp..rlapggvv 101
                      +g    l++D +++  +++  +l++l +  +++pg+v+
       KOO21379.1 259 RGMGPALYVDIDADLfSSTWTALDWLFRegLMKPGTVI 296
                      56667888888877437777777777433367777765 PP

>> TP2  Nuclear transition protein 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   8.0   2.1e-05      0.12      20     100 ..      51     138 ..      38     142 .. 0.69

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 2.1e-05
         TP2  20 rPqshtcsq..cscsrhcqncsqsc......rrsqscsrsrsssqsptshrspsghqsqspspslpprrkkktmhshksplrPtthscs 100
                  Pq++t ++   +c + c  c q c      r  + cs  r    +   + +p+ + +qs +++++ +r+  + +++ +p+r  +h+ s
  KOO21379.1  51 LPQARTWEDalTTCQQRCEMC-QGCnfmsvsREERDCSWFRNCDVTNLHRSQPTEKVAQSFRTAPSGKRHLPSSNADVAPMRGIAHKHS 138
                 566666544223455555444.33311111155677888887777666556678899*************************9999866 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (307 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       487  (0.0271627); expected 358.6 (0.02)
Passed bias filter:                      279  (0.0155614); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.42u 0.23s 00:00:00.65 Elapsed: 00:00:00.38
# Mc/sec: 2440.33
//
Query:       KOO21380.1  [L=451]
Description: hypothetical protein Ctob_004524 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.5e-08   34.8   0.0    4.9e-08   33.9   0.0    1.5  1  CS        CS domain


Domain annotation for each model (and alignments):
>> CS  CS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.9   0.0   2.7e-12   4.9e-08       2      76 .]     350     433 ..     349     433 .. 0.75

  Alignments for each domain:
  == domain 1  score: 33.9 bits;  conditional E-value: 2.7e-12
                 SCEEEEETTEEEEEEE-....TTCTTTTTCEEEEEETTE.EEEEE.TSCEEEEECEBSS-BETTTEEEEEET....TEEEEEEEB CS
          CS   2 kydWyQtldeVvvtiyv....kkvnikkkdvkvefkers.lkvki.gkeklliegeLfgpIdpeesswties....kkveitLkK 76 
                 +y+W+Qt ++V+v++ v      ++  kk++kv+ +    lkv + g   +l  ++Lf+ + p+++sw++ +    + + +tL+K
  KOO21380.1 350 RYTWSQTQEDVEVRVLVgiplGPASHLKKRLKVSYGRGEsLKVAVdGA-AVLEIEKLFDRVAPDQCSWSLDEgkgsTALVVTLEK 433
                 8************987732213446667777777554446****9444.5555556**************955888999999998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (451 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       446  (0.0248759); expected 358.6 (0.02)
Passed bias filter:                      302  (0.0168442); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.22s 00:00:00.70 Elapsed: 00:00:00.37
# Mc/sec: 3682.97
//
Query:       KOO21381.1  [L=546]
Description: achain of c-myb r2r3 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.4e-13   50.8   0.0    2.2e-13   50.2   0.0    1.4  1  Myb_DNA-binding  Myb-like DNA-binding domain
    5.7e-07   29.7   0.0    1.2e-06   28.6   0.0    1.5  1  Myb_DNA-bind_6   Myb-like DNA-binding domain
     0.0021   17.9   1.2     0.0023   17.8   0.0    1.6  2  Myb_DNA-bind_7   Myb DNA-binding like
  ------ inclusion threshold ------
       0.04   14.1   0.1       0.13   12.5   0.1    1.9  1  Alveol-reg_P311  Neuronal protein 3.1 (p311)
       0.22   11.5   0.0        0.4   10.7   0.0    1.3  1  SLIDE            SLIDE
        5.6    6.7   5.4        9.3    6.0   5.4    1.2  1  RR_TM4-6         Ryanodine Receptor TM 4-6


Domain annotation for each model (and alignments):
>> Myb_DNA-binding  Myb-like DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.2   0.0   7.4e-17   2.2e-13       1      44 [.      31      74 ..      31      76 .. 0.97

  Alignments for each domain:
  == domain 1  score: 50.2 bits;  conditional E-value: 7.4e-17
                     CSSSBHHHHHHHHHHHHHHTTCHHHHHHHHTSS-HHHHHHHHHH CS
  Myb_DNA-binding  1 rgkWteeEdelLleavkkhGnrWkkIaerlggRtekqcrsrwrn 44
                     +g+Wt+eEd  + e v+++G rW+kI + ++gRt++++r+r+++
       KOO21381.1 31 KGAWTAEEDRVIMESVARYGTRWSKIVKLMPGRTDNAIRNRYNS 74
                     79****************************************96 PP

>> Myb_DNA-bind_6  Myb-like DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.6   0.0     4e-10   1.2e-06       1      44 [.      34      77 ..      34      97 .. 0.89

  Alignments for each domain:
  == domain 1  score: 28.6 bits;  conditional E-value: 4e-10
  Myb_DNA-bind_6  1 WteeEdeiLlklvekygndWknIaealnrRtpkqcfdrwknkLr 44
                    Wt+eEd+ + + v +yg  W++I + ++ Rt +++++r+++  r
      KOO21381.1 34 WTAEEDRVIMESVARYGTRWSKIVKLMPGRTDNAIRNRYNSAMR 77
                    ***************************55***********9543 PP

>> Myb_DNA-bind_7  Myb DNA-binding like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.8   0.0   7.5e-07    0.0023       7      57 ..      30      80 ..      26      89 .. 0.90
   2 ?   -4.1   0.5       5.1   1.5e+04      51      72 ..     228     248 ..     226     264 .. 0.49

  Alignments for each domain:
  == domain 1  score: 17.8 bits;  conditional E-value: 7.5e-07
  Myb_DNA-bind_7  7 ktkkWskeetekFYkaLsqfGtDFsliaklfpkrtrrqlKlKFkkEerknp 57
                    k+  W+ ee +   + +  +Gt +s i kl+p+rt++ +++++++  r+++
      KOO21381.1 30 KKGAWTAEEDRVIMESVARYGTRWSKIVKLMPGRTDNAIRNRYNSAMRRQK 80
                    6789***************************************99877665 PP

  == domain 2  score: -4.1 bits;  conditional E-value: 5.1
  Myb_DNA-bind_7  51 kEerknpeliekalkkrkeldl 72 
                     kE +   +++++a k  k   +
      KOO21381.1 228 KEAKAAEREVKAAEKAAKA-AA 248
                     5666666666665444444.22 PP

>> Alveol-reg_P311  Neuronal protein 3.1 (p311)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.1   4.2e-05      0.13      28      54 ..     139     165 ..     133     173 .. 0.88

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 4.2e-05
  Alveol-reg_P311  28 rLPvpkEVNrKKedeveaaslippgsd 54 
                       LP+pk V rK+ed  e+a++ p+ s+
       KOO21381.1 139 ALPLPKPVKRKREDAAEGAAPEPVVSS 165
                      69*******************998775 PP

>> SLIDE  SLIDE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   0.00014       0.4      47      77 ..      29      58 ..      10      85 .. 0.83

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00014
       SLIDE 47 kgkkeyteeeDrfllvllakyGygnyekikk 77
                 +k  +t eeDr+++  +a+yG + + ki k
  KOO21381.1 29 VKKGAWTAEEDRVIMESVARYGTR-WSKIVK 58
                45556*****************98.898876 PP

>> RR_TM4-6  Ryanodine Receptor TM 4-6
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.0   5.4    0.0031       9.3      84     163 ..     216     298 ..     193     307 .. 0.43

  Alignments for each domain:
  == domain 1  score: 6.0 bits;  conditional E-value: 0.0031
                 XXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXX...............XXXXXXXXXXXXXXXXXXXXXXXXX- CS
    RR_TM4-6  84 pelkkklaeeeeaeeekeeeeepeaeaeekadaengekeekeke.....keeeekeseeeeeekkkkkkakskkkeeaeaeesel 163
                 p+  +  a+   ++e+k++e+e +a + ++a+a  +e++ ++k+     k++++  +     +k+ k+++ks kk +a+++ +++
  KOO21381.1 216 PASAQPSAT-ALSKEAKAAEREVKAAE-KAAKAAAKEAAAAAKAaakeaKAAKDATEMPPPISKPVKSPRKSPKKPSAKNAFFNF 298
                 333333332.22333333333333333.233333333333333311111222222222233444555556666655555555444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (546 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1392  (0.0776396); expected 358.6 (0.02)
Passed bias filter:                      665  (0.0370907); expected 358.6 (0.02)
Passed Vit filter:                       129  (0.00719505); expected 17.9 (0.001)
Passed Fwd filter:                        15  (0.000836633); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.68u 0.28s 00:00:00.96 Elapsed: 00:00:00.41
# Mc/sec: 4015.45
//
Query:       KOO21382.1  [L=179]
Description: receptor expression-enhancing protein 1-like protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.7e-22   78.5   6.4    4.3e-22   77.8   6.4    1.3  1  TB2_DP1_HVA22  TB2/DP1, HVA22 family
  ------ inclusion threshold ------
      0.068   12.3   0.3       0.11   11.6   0.1    1.3  1  Arb2           Arb2 domain


Domain annotation for each model (and alignments):
>> TB2_DP1_HVA22  TB2/DP1, HVA22 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   77.8   6.4   4.8e-26   4.3e-22       1      76 [.      19      97 ..      19      98 .. 0.91

  Alignments for each domain:
  == domain 1  score: 77.8 bits;  conditional E-value: 4.8e-26
  TB2_DP1_HVA22  1 Payaslkalesk.eksdet.kwltYWvvfafltvvesladvlls.wiPfYylfKllfllwlvlpqtqgatyvYekflrp 76
                   P+y s+k+l+s+ +k+ +  kw+ YW+vf+++++ e+++d+l++ w Pf+y+fK+lf++wl+  ++ ga+ v+ k+++p
     KOO21382.1 19 PVYGSFKTLRSTkDKDADNaKWMPYWIVFSLFSATEFILDFLFAfWCPFWYEFKILFVVWLQPNYFDGAHKVWTKYIEP 97
                   99********88555545558******************999877********************************98 PP

>> Arb2  Arb2 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.1   1.2e-05      0.11      75     129 ..     118     170 ..     103     173 .. 0.73

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 1.2e-05
                 C-EEE-TCHHHHHHHHCTT-EEEEEEE----.......--SSSS-HHHHHHHHHH CS
        Arb2  75 nsvlvdsvkkyidWavkqkygviDvnipkliteeeeeeskeeeeeesaasesqel 129
                   + +d +++ idW + q+ +v+ + +    +++++++   +e++e++ +e++e+
  KOO21382.1 118 RNISADDLTQLIDWVTVQGQAVVGIKVADAPAKKTAAP--AAEKQEDKPDEAEEV 170
                 56779************************776655554..333444444455554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (179 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       591  (0.0329634); expected 358.6 (0.02)
Passed bias filter:                      363  (0.0202465); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.41u 0.23s 00:00:00.64 Elapsed: 00:00:00.38
# Mc/sec: 1416.68
//
Query:       KOO21383.1  [L=166]
Description: hypothetical protein Ctob_004532 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (166 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       595  (0.0331865); expected 358.6 (0.02)
Passed bias filter:                      507  (0.0282782); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.23s 00:00:00.59 Elapsed: 00:00:00.36
# Mc/sec: 1386.99
//
Query:       KOO21384.1  [L=2448]
Description: leucine rich repeat family protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00098   18.9   0.0     0.0031   17.3   0.0    1.9  1  EF-hand_6  EF-hand domain
  ------ inclusion threshold ------
      0.023   14.2   0.0      0.065   12.8   0.0    1.8  1  EF-hand_1  EF hand
      0.034   13.7   0.0      0.076   12.5   0.0    1.6  1  EF-hand_5  EF hand
      0.083   13.3   0.0       0.28   11.7   0.0    1.8  1  EF-hand_7  EF-hand domain pair
      0.089   12.5   0.4        0.5   10.1   0.4    2.3  1  MotA_ExbB  MotA/TolQ/ExbB proton channel family


Domain annotation for each model (and alignments):
>> EF-hand_6  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   0.0   8.8e-07    0.0031       3      27 ..    1438    1462 ..    1436    1468 .. 0.92

  Alignments for each domain:
  == domain 1  score: 17.3 bits;  conditional E-value: 8.8e-07
   EF-hand_6    3 reaFklfDkdgdGkidaeElrkalr 27  
                  + aF+++D dg++++++ El++a+r
  KOO21384.1 1438 KTAFQMIDEDGSNELSRTELIRAFR 1462
                  679********************99 PP

>> EF-hand_1  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0   1.8e-05     0.065       3      27 ..    1438    1462 ..    1436    1463 .. 0.92

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 1.8e-05
                  HHHHHHHTTTSSSEEEHHHHHHHHH CS
   EF-hand_1    3 keiFrefDkDgdGkIdfeEfkellk 27  
                  k +F+++D Dg+  +++ E++++++
  KOO21384.1 1438 KTAFQMIDEDGSNELSRTELIRAFR 1462
                  789******************9987 PP

>> EF-hand_5  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   2.1e-05     0.076       4      23 ..    1440    1459 ..    1436    1461 .. 0.86

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 2.1e-05
                  HHHHH-SS-SSCE-HHHHHH CS
   EF-hand_5    4 tFqaiDlNgDGkIskeELkt 23  
                  +Fq+iD +g+  +s+ EL +
  KOO21384.1 1440 AFQMIDEDGSNELSRTELIR 1459
                  8****************965 PP

>> EF-hand_7  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   7.8e-05      0.28       4      29 ..    1437    1462 ..    1434    1485 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 7.8e-05
   EF-hand_7    4 lkeaFkelDtdgdgyldkeellrllr 29  
                   k+aF+++D dg++ l+++el r++r
  KOO21384.1 1437 AKTAFQMIDEDGSNELSRTELIRAFR 1462
                  6899****************888887 PP

>> MotA_ExbB  MotA/TolQ/ExbB proton channel family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.4   0.00014       0.5      59      77 ..     488     506 ..     482     514 .. 0.88

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.00014
                 HHHHHHHHHHHHHHHHHHH CS
   MotA_ExbB  59 lGLlGTVlGlieafqalad 77 
                  GL+GT++G+  a+++ ++
  KOO21384.1 488 RGLIGTIWGMAAALRNFGQ 506
                 5***************886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (2448 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1021  (0.0569468); expected 358.6 (0.02)
Passed bias filter:                      463  (0.0258241); expected 358.6 (0.02)
Passed Vit filter:                        48  (0.00267723); expected 17.9 (0.001)
Passed Fwd filter:                        13  (0.000725082); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 1.31u 0.30s 00:00:01.61 Elapsed: 00:00:00.48
# Mc/sec: 15374.26
//
Query:       KOO21385.1  [L=197]
Description: hypothetical protein Ctob_004530 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (197 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       456  (0.0254337); expected 358.6 (0.02)
Passed bias filter:                      308  (0.0171789); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.25s 00:00:00.63 Elapsed: 00:00:00.38
# Mc/sec: 1556.57
//
Query:       KOO21386.1  [L=291]
Description: synaptojanin-1-like protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    6.7e-06   25.8   0.0      8e-06   25.5   0.0    1.1  1  Exo_endo_phos  Endonuclease/Exonuclease/phosphatase family


Domain annotation for each model (and alignments):
>> Exo_endo_phos  Endonuclease/Exonuclease/phosphatase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.5   0.0   4.5e-10     8e-06      32     186 ..      52     227 ..       7     270 .. 0.73

  Alignments for each domain:
  == domain 1  score: 25.5 bits;  conditional E-value: 4.5e-10
                    SEEEEEEEBSCTCHHHHHHHHH..........TTCEEEEECCH..................................................... CS
                    xxxxxxxxxxxxxxxxxxxxxx..........xxxxxxxxxxx..................................................... RF
  Exo_endo_phos  32 DvlgLQEvdddelsriplllal..........ggflgasstsp..................................................... 64 
                     ++g QE       ++pl +++          +         +                                                     
     KOO21386.1  52 VIIGCQE-------FVPLDAKQllnapqttavK---------Tqgferillamlqhthgvkyvalraadkldqapplmgglltlvlvseallasvs 131
                    5777888.......6666664333333334440.........144455555555555555566668888888999999999999999999999999 PP

                    ........ECSSSTTSSEEEEEECSTE..EEEEEEEEEETSSSSGCEEEEEEEEEEEEEEECCCHHGHHHHHHHHHHHHHHHHHHHHHTTSEEEEE CS
                    ........xxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Exo_endo_phos  65 ........tgggggggnggavlsrfpl..tslfrrtfiefndlvaalrreplaakleqlniashrdhdlvrdlqllalllqvealnadrgapviva 150
                            tg gg  gn+ga++ r ++   sl+  ++     ++ +   +++++  e+l              ++l  +l+++ l+a+     + +
     KOO21386.1 132 qvhtvlvpTGLGGMMGNKGAIALRLSIgsASLVFVNLHLPSGESTQSLEQRNTTFREVL--------------KQLEADLAAAKLPAADESITFCF 213
                    999************************99999777777777777777777777776664..............4777777777777777777777* PP

                    EE-SSSTSGGGBSCGHHHHHHCTTTHHSSCESCETT CS
                    xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Exo_endo_phos 151 GDfNarpsdddsrvlrtrglalapapvglyllgggp 186
                    GDfN+                       l+ ++++ 
     KOO21386.1 214 GDFNF----------------------RLTVPNREA 227
                    *****......................344444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (291 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       441  (0.024597); expected 358.6 (0.02)
Passed bias filter:                      383  (0.021362); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.21s 00:00:00.62 Elapsed: 00:00:00.35
# Mc/sec: 2459.65
//
Query:       KOO21387.1  [L=681]
Description: hypothetical protein Ctob_004534, partial [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.9e-08   32.8   2.4      1e-05   25.1   0.5    2.7  2  TPR_1     Tetratricopeptide repeat
    5.9e-08   32.2   5.3    9.9e-06   25.3   0.8    3.3  2  TPR_2     Tetratricopeptide repeat
    0.00018   22.1   3.0    0.00018   22.1   3.0    4.4  6  TPR_16    Tetratricopeptide repeat
     0.0034   17.6   9.6     0.0041   17.4   3.3    3.3  4  TPR_12    Tetratricopeptide repeat
     0.0038   17.3   2.0     0.0038   17.3   2.0    2.7  3  TPR_9     Tetratricopeptide repeat
  ------ inclusion threshold ------
      0.012   15.7  15.7      0.026   14.5  15.7    1.5  1  zf-CXXC   CXXC zinc finger domain
      0.014   14.3   0.1      0.023   13.6   0.1    1.2  1  DUF5588   Family of unknown function (DUF5588)
      0.015   15.5   1.7      0.048   13.9   0.2    2.6  2  TPR_8     Tetratricopeptide repeat
      0.031   14.8   1.9      0.031   14.8   1.9    2.6  2  TPR_19    Tetratricopeptide repeat
      0.045   13.6   3.4       0.12   12.2   0.6    2.3  2  DUF5113   Domain of unknown function (DUF5113)


Domain annotation for each model (and alignments):
>> TPR_1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.7   0.1    0.0037       6.7       9      29 ..     396     416 ..     395     419 .. 0.84
   2 !   25.1   0.5   5.9e-09     1e-05       2      33 ..     426     457 ..     425     457 .. 0.94

  Alignments for each domain:
  == domain 1  score: 6.7 bits;  conditional E-value: 0.0037
                 HHHHHTT-HHHHHHHHHHHHH CS
       TPR_1   9 nayfklgkydeAleyyekALe 29 
                 n++ +  +y++Al +++ AL+
  KOO21387.1 396 NMLVRCHEYEKALPAFDAALT 416
                 66667789***********96 PP

  == domain 2  score: 25.1 bits;  conditional E-value: 5.9e-09
                 HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT CS
       TPR_1   2 kalynlGnayfklgkydeAleyyekALelnPn 33 
                  +l n++++++klg+y eAl++ + A+el+P+
  KOO21387.1 426 LVLRNRAYCLMKLGRYGEALADAQLAIELEPE 457
                 6789**************************95 PP

>> TPR_2  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.3   0.3    0.0031       5.6       4      28 ..     391     415 ..     388     418 .. 0.89
   2 !   25.3   0.8   5.5e-09   9.9e-06       1      33 [.     425     457 ..     425     457 .. 0.95

  Alignments for each domain:
  == domain 1  score: 7.3 bits;  conditional E-value: 0.0031
       TPR_2   4 lynlGlayyklgdyeeAleafekAl 28 
                 +   ++ + +  +ye+Al af++Al
  KOO21387.1 391 YSKYANMLVRCHEYEKALPAFDAAL 415
                 56789999999*************9 PP

  == domain 2  score: 25.3 bits;  conditional E-value: 5.5e-09
       TPR_2   1 aealynlGlayyklgdyeeAleafekAleldPn 33 
                 a +l n++++++klg+y eAl++ + A+el+P+
  KOO21387.1 425 ALVLRNRAYCLMKLGRYGEALADAQLAIELEPE 457
                 6789***************************96 PP

>> TPR_16  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.6   0.8        10   1.8e+04      14      25 ..     158     169 ..     153     173 .. 0.55
   2 ?   -4.1   2.2        10   1.8e+04       9      36 ..     236     262 ..     236     263 .. 0.69
   3 !   22.1   3.0     1e-07   0.00018      12      63 ..     403     454 ..     395     459 .. 0.89
   4 ?   -0.3   0.3      0.99   1.8e+03      35      63 ..     467     492 ..     464     497 .. 0.65
   5 ?   -4.4   0.4        10   1.8e+04      52      60 ..     605     613 ..     600     615 .. 0.54
   6 ?   -3.5   0.5       9.8   1.8e+04      44      60 ..     637     653 ..     635     657 .. 0.55

  Alignments for each domain:
  == domain 1  score: -3.6 bits;  conditional E-value: 10
      TPR_16  14 ddAaaaleaalk 25 
                 ++Aa a+  +++
  KOO21387.1 158 AAAASAAAKLVR 169
                 344445455554 PP

  == domain 2  score: -4.1 bits;  conditional E-value: 10
      TPR_16   9 ragdyddAaaaleaalkrdpssPdaaeA 36 
                 +ag++ +Aa a  a  +++p +P aa+A
  KOO21387.1 236 QAGKPKAAATATSAGADYAP-PPKAADA 262
                 57888888888777777775.6667766 PP

  == domain 3  score: 22.1 bits;  conditional E-value: 1e-07
      TPR_16  12 dyddAaaaleaalkrdpssPdaaeAllllgdaalrqgrlaeAaalyraalra 63 
                 +y++A++a++aal  +   P +a  l +++ ++ ++gr+ eA+a  + a++ 
  KOO21387.1 403 EYEKALPAFDAALTERQLAPKRALVLRNRAYCLMKLGRYGEALADAQLAIEL 454
                 79*****************************************877777665 PP

  == domain 4  score: -0.3 bits;  conditional E-value: 0.99
      TPR_16  35 eAllllgdaalrqgrlaeAaalyraalra 63 
                 +Al++l+ +a + ++ ae    yr++l+a
  KOO21387.1 467 DALMELAKVAQQEKNAAE---EYRRWLQA 492
                 788888888866655444...47776655 PP

  == domain 5  score: -4.4 bits;  conditional E-value: 10
      TPR_16  52 eAaalyraa 60 
                 +Aaa++ +a
  KOO21387.1 605 AAAAAVSEA 613
                 233555554 PP

  == domain 6  score: -3.5 bits;  conditional E-value: 9.8
      TPR_16  44 alrqgrlaeAaalyraa 60 
                 a+++  + +A ++ r+a
  KOO21387.1 637 AAQAEQVVAAMDAMRRA 653
                 45555555555666665 PP

>> TPR_12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.4   3.3   2.3e-06    0.0041       7      73 ..     391     453 ..     385     454 .. 0.87
   2 !   13.6   2.1   3.3e-05      0.06       3      59 ..     425     480 ..     423     486 .. 0.81
   3 ?   -0.8   0.1       1.1     2e+03       8      49 ..     471     505 ..     464     515 .. 0.54
   4 ?   -3.2   0.0       5.9   1.1e+04      63      75 ..     544     556 ..     543     558 .. 0.75

  Alignments for each domain:
  == domain 1  score: 17.4 bits;  conditional E-value: 2.3e-06
      TPR_12   7 n.nlaavlrrlgrydeAlellekaleiarrllGpdhpltattlrnLgrlyralgryeeAlelleeala 73 
                 + ++a++l r  +y++Al  +++al  ++ +  p+    a +lrn + ++ +lgry eAl+  + a++
  KOO21387.1 391 YsKYANMLVRCHEYEKALPAFDAALTERQLA--PK---RALVLRNRAYCLMKLGRYGEALADAQLAIE 453
                 5369********************9999766..76...699*******************99888876 PP

  == domain 2  score: 13.6 bits;  conditional E-value: 3.3e-05
      TPR_12   3 atalnnlaavlrrlgrydeAlellekaleia.rrllGpdhpltattlrnLgrlyralg 59 
                 a +l+n+a +l++lgry eAl+  + a+e+  + +   ++     +l  L+ + ++ +
  KOO21387.1 425 ALVLRNRAYCLMKLGRYGEALADAQLAIELEpEGA--SNWFRQMDALMELAKVAQQEK 480
                 67889************************986666..888888888888888875544 PP

  == domain 3  score: -0.8 bits;  conditional E-value: 1.1
      TPR_12   8 nlaavlrrlgrydeAlellekaleiarrllGpdhpltattlr 49 
                 +la v ++ ++         + ++++ ++ ++dh  +a++l 
  KOO21387.1 471 ELAKVAQQEKNA-------AEEYRRWLQARETDHVMEAEVLE 505
                 566666666552.......22233333334466666666665 PP

  == domain 4  score: -3.2 bits;  conditional E-value: 5.9
      TPR_12  63 eAlelleealaia 75 
                  A+ + e+al +a
  KOO21387.1 544 SAEPMAEKALPAA 556
                 5888899998776 PP

>> TPR_9  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.1       3.8   6.7e+03      39      54 ..       2      17 ..       1      29 [. 0.74
   2 ?   -4.1   0.0        10   1.8e+04      48      67 ..     292     311 ..     290     313 .. 0.71
   3 !   17.3   2.0   2.1e-06    0.0038      10      62 ..     403     458 ..     395     473 .. 0.83

  Alignments for each domain:
  == domain 1  score: -2.7 bits;  conditional E-value: 3.8
       TPR_9 39 laqlGclsaAladLea 54
                +a+ +++ +A+++L+ 
  KOO21387.1  2 NAEAEAFLEAVRALDL 17
                5677888888888875 PP

  == domain 2  score: -4.1 bits;  conditional E-value: 10
       TPR_9  48 AladLeaylalapdapdaea 67 
                 A+   ea+  ++++ap a a
  KOO21387.1 292 ARSIVEAFRIHSEQAPSASA 311
                 55556788888888888876 PP

  == domain 3  score: 17.3 bits;  conditional E-value: 2.1e-06
       TPR_9  10 dweralavverll...llaPddpeerrdRGlllaqlGclsaAladLeaylalapda 62 
                 ++e+al + +  l   +laP+++  +r R+ +l++lG++ +Alad + +++l+p+ 
  KOO21387.1 403 EYEKALPAFDAALterQLAPKRALVLRNRAYCLMKLGRYGEALADAQLAIELEPEG 458
                 566666666666644468************************************75 PP

>> zf-CXXC  CXXC zinc finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.5  15.7   1.4e-05     0.026       5      48 .]     339     387 ..     336     387 .. 0.82

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 1.4e-05
                 X-B--SSSTTTTS--.BS-SCCCCT......SCCCTS-S-S---BGGG-- CS
     zf-CXXC   5 krkrCgeCeaCqrtedCgkCsaCrd......kkkfggpgkkkqkCrkRrC 48 
                   krC +Ce C r  dCg+C+aC++      k k   p k +  C  R C
  KOO21387.1 339 SGKRC-SCESCVRVADCGECKACLKvremgrKSKEPVPRKDEHVCYERVC 387
                 56788.7*****************97777766666777888889999988 PP

>> DUF5588  Family of unknown function (DUF5588)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.1   1.3e-05     0.023      36     115 ..     376     455 ..     365     476 .. 0.77

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 1.3e-05
     DUF5588  36 fyeetessddvealtikkfkgdlayrrqeyqkalqeyssiseklsstnfamkrd.vqegqarclahlgrhaeal...eiaadle 115
                   +e  + + v  l   k+   +  r +ey+kal  + +    l+  ++a kr  v   +a cl +lgr+ eal   ++a +le
  KOO21387.1 376 RKDEHVCYERVCQLQYSKYAN-MLVRCHEYEKALPAFDA---ALTERQLAPKRAlVLRNRAYCLMKLGRYGEALadaQLAIELE 455
                 556666777777777888764.55799*******98865...68888999999746799**************94444667777 PP

>> TPR_8  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.1       1.7   3.1e+03      16      29 ..     403     416 ..     391     418 .. 0.77
   2 ?   13.9   0.2   2.7e-05     0.048       6      33 ..     430     457 ..     428     457 .. 0.95

  Alignments for each domain:
  == domain 1  score: -1.1 bits;  conditional E-value: 1.7
                 -HHHHHHHHHHHHH CS
       TPR_8  16 dyeeAkeyyekale 29 
                 +ye+A  ++  al+
  KOO21387.1 403 EYEKALPAFDAALT 416
                 79999999999985 PP

  == domain 2  score: 13.9 bits;  conditional E-value: 2.7e-05
                 HHHHHHHHTT-HHHHHHHHHHHHHHHHH CS
       TPR_8   6 nlgsiylklgdyeeAkeyyekaleldpd 33 
                 n +++++klg+y eA +  + a+el+p+
  KOO21387.1 430 NRAYCLMKLGRYGEALADAQLAIELEPE 457
                 689**********************995 PP

>> TPR_19  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.3       5.4   9.7e+03      43      53 ..       4      14 ..       3      25 .. 0.55
   2 ?   14.8   1.9   1.7e-05     0.031       6      46 ..     403     446 ..     402     460 .. 0.91

  Alignments for each domain:
  == domain 1  score: -2.8 bits;  conditional E-value: 5.4
      TPR_19 43 eAealLdalpe 53
                eAea L+a+ +
  KOO21387.1  4 EAEAFLEAVRA 14
                45555554433 PP

  == domain 2  score: 14.8 bits;  conditional E-value: 1.7e-05
      TPR_19   6 dyaeAlalleqalqe...dpknaearllLAeallalgqldeAea 46 
                  y+ Al+++ +al+e   +pk a ++ + A +l++lg++ eA a
  KOO21387.1 403 EYEKALPAFDAALTErqlAPKRALVLRNRAYCLMKLGRYGEALA 446
                 5999*********66666************************76 PP

>> DUF5113  Domain of unknown function (DUF5113)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.4   0.1      0.14   2.5e+02      10      36 ..     390     416 ..     383     418 .. 0.85
   2 ?   12.2   0.6   6.6e-05      0.12      12      95 ..     429     511 ..     423     516 .. 0.88

  Alignments for each domain:
  == domain 1  score: 1.4 bits;  conditional E-value: 0.14
     DUF5113  10 dYanlayylnvegeyeeALeyldsale 36 
                 +Y + a++l    eye+AL  +d al+
  KOO21387.1 390 QYSKYANMLVRCHEYEKALPAFDAALT 416
                 57777888888899**********995 PP

  == domain 2  score: 12.2 bits;  conditional E-value: 6.6e-05
     DUF5113  12 anlayylnvegeyeeALeyldsaleylNahyekYakkkadtldklkmllegegeaael..kWlkdekfktdyevildiReelavay 95 
                 +n ay+l   g+y eAL+ ++ a+e+  +  +++ ++  d l++l  ++++e++aae   +Wl+    +td  + +++ e +ava 
  KOO21387.1 429 RNRAYCLMKLGRYGEALADAQLAIELEPEGASNWFRQM-DALMELAKVAQQEKNAAEEyrRWLQA--RETDHVMEAEVLEAVAVAD 511
                 78999999*****************************9.9***********99999853379995..7888888889999999885 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (681 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       983  (0.0548274); expected 358.6 (0.02)
Passed bias filter:                      458  (0.0255452); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.64u 0.26s 00:00:00.90 Elapsed: 00:00:00.45
# Mc/sec: 4594.34
//
Query:       KOO21388.1  [L=103]
Description: hypothetical protein Ctob_006128, partial [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (103 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       455  (0.0253779); expected 358.6 (0.02)
Passed bias filter:                      324  (0.0180713); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.39u 0.22s 00:00:00.61 Elapsed: 00:00:00.40
# Mc/sec: 773.70
//
Query:       KOO21389.1  [L=588]
Description: endonuclease exonuclease phosphatase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.4e-10   41.1   0.3    2.3e-10   40.4   0.3    1.4  1  Exo_endo_phos  Endonuclease/Exonuclease/phosphatase family


Domain annotation for each model (and alignments):
>> Exo_endo_phos  Endonuclease/Exonuclease/phosphatase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.4   0.3   1.3e-14   2.3e-10      24     233 .]      48     329 ..      19     329 .. 0.78

  Alignments for each domain:
  == domain 1  score: 40.4 bits;  conditional E-value: 1.3e-14
                    HHHHHCTTSEEEEEEEBSCTCHHHHHHHHHTTCEEEEECCH...........................ECSSSTTSSEEEEEECSTE.EEEEEEEE CS
                    xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...........................xxxxxxxxxxxxxxxxxxx.xxxxxxxx RF
  Exo_endo_phos  24 dlltaydaDvlgLQEvdddelsriplllalggflgasstsp...........................tgggggggnggavlsrfpl.tslfrrtf 91 
                    d +++  +Dv++LQEv+ d      ++++    + a++                              ++  g  + g+++l r+    +    + 
     KOO21389.1  48 DKIRELAPDVVCLQEVQSDGVRKHFEANM--PEYAATYVLNdelrcrigklmrkaldsagagpqttisGFLLGPVQAGLMILHRRDTlVADGPASA 141
                    44666789************999999995..44444444445566777777777777777778899999******************999999999 PP

                    EETSSSSGCEEEEEEEEEEEEEEE.................................CCCHHGHHHHHHHHHHHHHHHHHHHHHTTSEEEEEEE-S CS
                    xxxxxxxxxxxxxxxxxxxxxxxx.................................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Exo_endo_phos  92 iefndlvaalrreplaakleqlni.................................ashrdhdlvrdlqllalllqvealnadrgapvivaGDfN 154
                    i f+d +  l +    + +++                                      +  + ++  ++ ++ +l+v a  +  + +v+v+GD+N
     KOO21389.1 142 ITFDDQSGDLLNAFRPRGVLCAHLrlradnsrivvanthansesasqlggmifgaysTLPSVPLSSTPRRNQLNQLFVHASRLSLHSRVVVCGDLN 237
                    *********************999********************************98888888888888888889999999999999******** PP

                    SSTSGGGBSCGHHHHHHCTTTHH.SSCESCETTTTTTTTTTTEB-B................EEEEEECHHHCCEEEEEEECCHHEEC.TSSCSSS CS
                    xxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxx................xxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxx RF
  Exo_endo_phos 155 arpsdddsrvlrtrglalapapv.glyllgggptptyvtraggsrl................Drilaspalalfrsgvlppplalvrr.ealtlSD 232
                    ++p  ++ +  + r  ++  a   +++  +gg+ + +   +++  l                D+i+a      ++sg  p++++l    +++ lSD
     KOO21389.1 238 SAPELGEIPANEHRFIDATAATAaNRQRQHGGTPWLHSWDGTRNPLvaagwlseghdartqlDYIFAA-----QDSGLEPEEVSLALDdGPIPLSD 328
                    *9999999995555554444443744444444444444444444446888889999999999******.....455555555555555999***** PP

                    B CS
                    x RF
  Exo_endo_phos 233 H 233
                    H
     KOO21389.1 329 H 329
                    9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (588 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2350  (0.131073); expected 358.6 (0.02)
Passed bias filter:                      557  (0.031067); expected 358.6 (0.02)
Passed Vit filter:                        89  (0.00496402); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.73u 0.33s 00:00:01.06 Elapsed: 00:00:00.46
# Mc/sec: 3837.43
//
Query:       KOO21390.1  [L=389]
Description: hypothetical protein Ctob_006122 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.3e-14   53.7   2.4    1.9e-07   30.7   0.1    2.4  2  ACT            ACT domain
    8.6e-08   32.7   0.5     0.0087   16.6   0.0    2.4  2  ACT_4          ACT domain
    0.00058   19.6   0.3       0.46   10.3   0.0    2.6  2  ACT_7          ACT domain
  ------ inclusion threshold ------
      0.018   15.0   0.7       0.48   10.4   0.0    2.4  2  ACT_6          ACT domain
      0.022   14.3   0.0      0.033   13.7   0.0    1.2  1  UvrD-helicase  UvrD/REP helicase N-terminal domain


Domain annotation for each model (and alignments):
>> ACT  ACT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.7   0.1   5.3e-11   1.9e-07       8      58 ..      27      74 ..      26      88 .. 0.77
   2 !   22.3   0.5   2.4e-08   8.4e-05       8      50 ..     191     232 ..     184     245 .. 0.74

  Alignments for each domain:
  == domain 1  score: 30.7 bits;  conditional E-value: 5.3e-11
                ESSTTHHHHHHHHHHHTTSEEEEEEEEEESTTECEEEEEEEEEEHHHHHHH CS
         ACT  8 pDrPGlLarvfgaladrgiNidsieqrssedkvagivfvvivvdeedleev 58
                +DrPG L+++++ l+++giNi++++ + +     +i++ +++v++  ++++
  KOO21390.1 27 RDRPGSLSAIAACLGEHGINIVHVSAFCTTT---SIAIDTVEVNTFTPAAA 74
                6*****************************9...56666665555444443 PP

  == domain 2  score: 22.3 bits;  conditional E-value: 2.4e-08
                 ESSTTHHHHHHHHHHHTTSEEEEEEEEEESTT..ECEEEEEEEEE CS
         ACT   8 pDrPGlLarvfgaladrgiNidsieqrssedk..vagivfvvivv 50 
                     G L+ ++++l drgiN+ ++  +s++++  v +++ +v+  
  KOO21390.1 191 L---GSLSTITSVLNDRGINVKRVVAFSTDRGvaVDTFHLSVLDQ 232
                 5...99*************************74444444444444 PP

>> ACT_4  ACT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   0.0   2.4e-06    0.0087       7      40 ..      20      53 ..      18      69 .. 0.88
   2 !   13.7   0.3     2e-05      0.07       7      60 ..     181     233 ..     176     244 .. 0.87

  Alignments for each domain:
  == domain 1  score: 16.6 bits;  conditional E-value: 2.4e-06
       ACT_4  7 vrleveaedrkglLaditqviseekanivsvnak 40
                v+l++  +dr+g L+ i++ + e+++niv+v+a 
  KOO21390.1 20 VTLHLAFRDRPGSLSAIAACLGEHGINIVHVSAF 53
                899****************************975 PP

  == domain 2  score: 13.7 bits;  conditional E-value: 2e-05
       ACT_4   7 vrleveaedrkglLaditqviseekanivsvnaktrkkdglaeikitveVkdve 60 
                 v l+++  d  g L+ it+v+++ ++n++ v a +++  g+a  +++++V d +
  KOO21390.1 181 VLLHIIFVDCLGSLSTITSVLNDRGINVKRVVAFSTD-RGVAVDTFHLSVLDQA 233
                 56899**************************999975.8999999999998876 PP

>> ACT_7  ACT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.3   0.0   0.00013      0.46      19      43 ..      28      54 ..      20      63 .. 0.83
   2 !    6.8   0.0    0.0016       5.8      18      41 ..     188     211 ..     176     218 .. 0.80

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.00013
                SS--HHHHHHHHHHTTT---EEEE..- CS
       ACT_7 19 dvtGivaklaspLaeagIsifqiS..t 43
                d +G ++++a++L e+gI+i  +S  +
  KOO21390.1 28 DRPGSLSAIAACLGEHGINIVHVSafC 54
                67999****************999542 PP

  == domain 2  score: 6.8 bits;  conditional E-value: 0.0016
                 -SS--HHHHHHHHHHTTT---EEE CS
       ACT_7  18 fdvtGivaklaspLaeagIsifqi 41 
                 +d+ G +++++s+L++ gI++  +
  KOO21390.1 188 VDCLGSLSTITSVLNDRGINVKRV 211
                 488999**************9655 PP

>> ACT_6  ACT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.0   0.00013      0.48      10      33 ..      27      50 ..      22      84 .. 0.92
   2 ?    2.5   0.1      0.04   1.4e+02       3      30 ..     181     208 ..     179     212 .. 0.88

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00013
       ACT_6 10 pdrpGltasLtsvlaefgvnilDi 33
                 drpG +++++++l e+g+ni+ +
  KOO21390.1 27 RDRPGSLSAIAACLGEHGINIVHV 50
                59*******************976 PP

  == domain 2  score: 2.5 bits;  conditional E-value: 0.04
       ACT_6   3 llitvtGpdrpGltasLtsvlaefgvni 30 
                 +l++++  d+ G ++ +tsvl + g+n+
  KOO21390.1 181 VLLHIIFVDCLGSLSTITSVLNDRGINV 208
                 67888888*************9999887 PP

>> UvrD-helicase  UvrD/REP helicase N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.0   9.2e-06     0.033      40      73 ..      56      89 ..      47     124 .. 0.78

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 9.2e-06
                   TSSSTGGGEEEEESSHHHHHHHHHHHHHHHHHCC CS
  UvrD-helicase 40 eeeiepdrilvvTFTnkAaeElkeRieealkkae 73
                   +++i +d + v TFT +Aae +k+Ri+e+  ka 
     KOO21390.1 56 TTSIAIDTVEVNTFTPAAAESIKSRIQELNAKAA 89
                   5679999999******************555443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (389 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       464  (0.0258799); expected 358.6 (0.02)
Passed bias filter:                      385  (0.0214736); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.48u 0.25s 00:00:00.73 Elapsed: 00:00:00.42
# Mc/sec: 2764.40
//
Query:       KOO21391.1  [L=373]
Description: calcium calmodulin-dependent protein kinase iv [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    5.3e-70  235.8   0.0    5.1e-68  229.3   0.0    2.1  2  Pkinase      Protein kinase domain
    3.3e-35  121.6   0.0    1.6e-33  116.1   0.0    2.1  1  Pkinase_Tyr  Protein tyrosine kinase
    6.2e-06   25.7   0.0    6.8e-06   25.6   0.0    1.3  1  Kinase-like  Kinase-like
     0.0003   20.2   0.0    0.00053   19.4   0.0    1.3  1  Kdo          Lipopolysaccharide kinase (Kdo/WaaP) family


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.6   0.0    0.0039        17       1      22 [.      24      45 ..      24      63 .. 0.86
   2 !  229.3   0.0   1.1e-71   5.1e-68      21     264 .]      76     312 ..      62     312 .. 0.91

  Alignments for each domain:
  == domain 1  score: 4.6 bits;  conditional E-value: 0.0039
                EEEEEEEEEESSEEEEEEEETT CS
     Pkinase  1 yekleklGeGsfGkVykaveke 22
                y k++ lG G+++kV+ka+ ++
  KOO21391.1 24 YDKKKLLGAGAYAKVFKATLQA 45
                77899************98655 PP

  == domain 2  score: 229.3 bits;  conditional E-value: 1.1e-71
                 TTTTEEEEEEEEECHCHCHHHHHHHHHHHHHHHHHSCTTB--EEEEEEESSEEEEEEE--TTEBHHHHHHHHSS--HHHHHHHHHHHHHHHHHHHHTTE CS
     Pkinase  21 ketgkivAvKkikkekakkkkekkvlrEikilkklkhpnivrlyevfeekdelylvleyveggeladllerkgslseeeakkiakqilegleylHskgi 119
                   +g ++A+K+i+++k  ++++  ++rE++il+ l hpni+rlyevf+e ++++lv+e+v ggel+d++ +kg++se++a k+++q++++l+y+H+k+i
  KOO21391.1  76 MGQGVEYALKVIDTSKCADMDD--ITREVSILHMLTHPNIMRLYEVFYEVRTVVLVTELVAGGELFDRIIEKGNYSEKDAAKVMSQLCNALSYMHEKNI 172
                 567889***********99887..*************************************************************************** PP

                 E-SS-SGGGEEEET...TTEEEE-SGTTSEESSSSCSBCTTTSCGGGS-HHHHTTSCB.SHHHHHHHHHHHHHHHHHSS-STTTSSHHHHHHHHHHTHH CS
     Pkinase 120 iHrDlKpeNiLide...kgelKitDFGlakelessskltsfvgtseYlAPEvlkeney.skkvDvWslGvilyelltgkppfsgekgkekvekeldqle 214
                 +H DlKpeN+L+     ++ lK++DFGla+ + ++++++s++gt+ Y+APE++++++  s++vD+Ws+Gvily ll+g ppf++++ +  + ++ +   
  KOO21391.1 173 VHLDLKPENLLYAApmpDETLKVADFGLARTIVKGKEMKSVCGTPGYVAPEIISNKGCnSTAVDMWSVGVILYILLCGFPPFAESELTALFDSIRKA-- 269
                 ************94344666*********************************999999************************44444433332222.. PP

                 HHHHHCTSHH...HHHTTS-HHHHHHHHHHT-SSGCCSTTHHHHHTSGGG CS
     Pkinase 215 kilkilgetkeklpeaseiseeakdllkkllkkdpkkRltaeellqhpyl 264
                         +++ +p++++is++ak+l+kkll  d +kRl+a+++l++ ++
  KOO21391.1 270 -------RYDFPSPWWDSISPQAKSLVKKLLVLDVTKRLSAKQVLENAWV 312
                 .......679************************************9996 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  116.1   0.0   3.5e-37   1.6e-33       4     257 ..      27     308 ..      24     310 .. 0.87

  Alignments for each domain:
  == domain 1  score: 116.1 bits;  conditional E-value: 3.5e-37
                  EEEEEEESSEEEEEEEEET............................TTTSSEEEEEEEEESTTSSHHHHHHHHHHHHHHHTS-BTTB--EEEEEESS CS
  Pkinase_Tyr   4 gkklGeGafGkVvegtlkg............................ekekkevkVavKtlkeeateeekeelleeakimkklkhpnivkllgvctke 73 
                  +k lG+Ga++kV+++tl+                                 + v+ a+K+++ ++ ++ ++++++e++i++ l hpni++l+ v ++ 
   KOO21391.1  27 KKLLGAGAYAKVFKATLQAprkhgtaedyakvlnedgtfryeelyksAVMGQGVEYALKVIDTSKCAD-MDDITREVSILHMLTHPNIMRLYEVFYEV 123
                  56788888888888888888888888888888888888888887765666789999*****6665555.9**************************** PP

                  SSEEEEEE--TTEBHHHHHHHTCTTTSBHHHHHHHHHHHHHHHHHHHHTTEEEST-SGGGEEEEE...TTEEEE-STTTHEETTTSSEEEETTSSTSG CS
  Pkinase_Tyr  74 epllivteyvkgGdLlkfLrkkekekltlkdllsfalqvAkGmeyLeskklvHrdlaarNvLlse...nkvvkisDfGLardiekddeyvkkeeaklp 168
                  +++++vte+v+gG+L + + +k   + + kd  +++ q++++++y+++k++vH dl   N L +    +++ k++DfGLar+i k +e+   ++    
   KOO21391.1 124 RTVVLVTELVAGGELFDRIIEK--GNYSEKDAAKVMSQLCNALSYMHEKNIVHLDLKPENLLYAApmpDETLKVADFGLARTIVKGKEM---KSVCGT 216
                  *******************998..99**************************************988899*************544444...344455 PP

                  GGGS-HHHHHHSE.EEHHHHHHHHHHHHHHHHTTSSGTTTTSHHHHHHHHH.HTTEES-BB..TTSBHHHHHHHHHHT-SSGGGS--HHHHHH CS
  Pkinase_Tyr 169 vkWmapEslkekk.ftsksDvWsfGvllwEiftlgespypglkneevlekl.kegkrlekp..ekcpeelyelmkkcweedpeeRptfselve 257
                    ++apE++++k   +++ D+Ws Gv+l+ +++ g  p+++ + + +++ + k+++  + p  ++++++ ++l+kk +  d ++R + ++++e
   KOO21391.1 217 PGYVAPEIISNKGcNSTAVDMWSVGVILYILLC-GFPPFAESELTALFDSIrKARYDFPSPwwDSISPQAKSLVKKLLVLDVTKRLSAKQVLE 308
                  68*******9988467899**********8887.****************9778888888855688899999999999999999999888865 PP

>> Kinase-like  Kinase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.6   0.0   1.5e-09   6.8e-06     138     254 ..     147     258 ..      26     300 .. 0.78

  Alignments for each domain:
  == domain 1  score: 25.6 bits;  conditional E-value: 1.5e-09
  Kinase-like 138 hkkletiarlllTlqlirlaanLqakglvhgkftvdnlll...dekgglmlggftaLvragtkvvlseve..kgfaPpEllgsrggytrknktkmthk 230
                  + +++++a+ +   ql +   ++++k +vh +++++nll+   +++  l++ +f+  ++  +   + +v+   g+  pE+++++g          + +
   KOO21391.1 147 NYSEKDAAKVMS--QLCNALSYMHEKNIVHLDLKPENLLYaapMPDETLKVADFGLARTIVKGKEMKSVCgtPGYVAPEIISNKGC--------NSTA 234
                  456666666655..899***********************77779999******97776655555567776789*********887........4568 PP

  Kinase-like 231 ldaWqlGlviyriwclklPltlat 254
                  +d W +G+  y + c   P+ + +
   KOO21391.1 235 VDMWSVGVILYILLCGFPPFAESE 258
                  9**************999997765 PP

>> Kdo  Lipopolysaccharide kinase (Kdo/WaaP) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.4   0.0   1.2e-07   0.00053      59     176 ..      99     208 ..      87     212 .. 0.84

  Alignments for each domain:
  == domain 1  score: 19.4 bits;  conditional E-value: 1.2e-07
         Kdo  59 vrEfrllkrLeeagvavpkpvaagavkvgleyrAlllterlegaqdLedllakwaelaeelkrallkavgrliaklhragvnHadlyaknillqqeeee 157
                  rE+++l+ L +  +  ++ v+++++      + +l+te ++g +  + +++k  +++e+  ++ + ++  + + +h+ ++ H dl + n+l  +    
  KOO21391.1  99 TREVSILHMLTHPNIMRLYEVFYEVR------TVVLVTELVAGGELFDRIIEK-GNYSEKDAAKVMSQLCNALSYMHEKNIVHLDLKPENLLYAAPM-P 189
                 67777777777777777777777765......4589*********99999997.77**************************************998.8 PP

         Kdo 158 eaeiwliDldkarlrlrad 176
                 ++++ + D+  ar+ ++++
  KOO21391.1 190 DETLKVADFGLARTIVKGK 208
                 8888899998888777655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (373 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       516  (0.0287802); expected 358.6 (0.02)
Passed bias filter:                      452  (0.0252106); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.50u 0.26s 00:00:00.76 Elapsed: 00:00:00.41
# Mc/sec: 2739.00
//
Query:       KOO21392.1  [L=75]
Description: hypothetical protein Ctob_006127 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
     0.0036   17.4   1.8       0.12   12.6   0.1    2.2  2  UBA_2          Ubiquitin associated domain (UBA)
  ------ inclusion threshold ------
      0.039   14.1   1.6        1.6    9.0   0.5    2.2  2  DUF2795        Protein of unknown function (DUF2795)
        1.7    8.8   5.3        9.7    6.4   0.1    2.8  3  Ribosomal_L10  Ribosomal protein L10


Domain annotation for each model (and alignments):
>> UBA_2  Ubiquitin associated domain (UBA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.4   0.3    0.0068        41      16      38 ..       9      31 ..       8      36 .. 0.86
   2 !   12.6   0.1   1.9e-05      0.12      16      40 ..      41      65 ..      40      66 .. 0.95

  Alignments for each domain:
  == domain 1  score: 4.4 bits;  conditional E-value: 0.0068
       UBA_2 16 dkdeIieaLekaekskssneIkD 38
                +k+e i +L++ae+  +++e+  
  KOO21392.1  9 EKQELIKSLREAEERAEKQEVVK 31
                699**********9988888865 PP

  == domain 2  score: 12.6 bits;  conditional E-value: 1.9e-05
       UBA_2 16 dkdeIieaLekaekskssneIkDAY 40
                +k+e++e+L++a ++k+s  +k+AY
  KOO21392.1 41 EKQEVVECLREAPEKKASVGVKNAY 65
                69*************9********* PP

>> DUF2795  Protein of unknown function (DUF2795)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.0   0.5   0.00026       1.6       8      36 ..       8      39 ..       8      40 .. 0.87
   2 ?    4.1   0.0    0.0088        53       8      20 ..      40      52 ..      40      58 .. 0.64

  Alignments for each domain:
  == domain 1  score: 9.0 bits;  conditional E-value: 0.00026
     DUF2795  8 atKdeLveyArrngA...pdevleaLeaLPdr 36
                a K+eL++ +r++      +ev++ +++ ++r
  KOO21392.1  8 AEKQELIKSLREAEEraeKQEVVKSFREAEER 39
                78*********99944479********99987 PP

  == domain 2  score: 4.1 bits;  conditional E-value: 0.0088
     DUF2795  8 atKdeLveyArrn 20
                a K+e+ve++r++
  KOO21392.1 40 AEKQEVVECLREA 52
                5677777777754 PP

>> Ribosomal_L10  Ribosomal protein L10
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.0   0.5     0.037   2.2e+02       4      16 ..       8      20 ..       5      26 .. 0.79
   2 ?    2.8   0.2     0.022   1.3e+02       2      16 ..      22      36 ..      21      39 .. 0.87
   3 ?    6.4   0.1    0.0016       9.7       2      25 ..      38      61 ..      37      66 .. 0.89

  Alignments for each domain:
  == domain 1  score: 2.0 bits;  conditional E-value: 0.037
                   CCHCCCCCCCCCC CS
  Ribosomal_L10  4 ekKeelvkelkel 16
                   ++K+el+k+l+e+
     KOO21392.1  8 AEKQELIKSLREA 20
                   7899****99997 PP

  == domain 2  score: 2.8 bits;  conditional E-value: 0.022
                   SCCCHCCCCCCCCCC CS
  Ribosomal_L10  2 tkekKeelvkelkel 16
                    +++K+e+vk+++e+
     KOO21392.1 22 ERAEKQEVVKSFREA 36
                   689********9985 PP

  == domain 3  score: 6.4 bits;  conditional E-value: 0.0016
                   SCCCHCCCCCCCCCCCTTSSEEEE CS
  Ribosomal_L10  2 tkekKeelvkelkellkkyksvvv 25
                    +++K+e+v+ l+e+ +k  sv v
     KOO21392.1 38 ERAEKQEVVECLREAPEKKASVGV 61
                   689**************9999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (75 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1964  (0.109543); expected 358.6 (0.02)
Passed bias filter:                      886  (0.0494171); expected 358.6 (0.02)
Passed Vit filter:                        73  (0.00407162); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.41u 0.24s 00:00:00.64 Elapsed: 00:00:00.40
# Mc/sec: 567.20
//
Query:       KOO21393.1  [L=176]
Description: hypothetical protein Ctob_006126 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.01   16.2   0.1      0.017   15.5   0.1    1.3  1  DUF4413   Domain of unknown function (DUF4413)
       0.17   11.6   0.0       0.17   11.6   0.0    1.2  1  G6B       G6B family


Domain annotation for each model (and alignments):
>> DUF4413  Domain of unknown function (DUF4413)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.5   0.1   1.9e-06     0.017      19      94 ..      34     119 ..      28     124 .. 0.71

  Alignments for each domain:
  == domain 1  score: 15.5 bits;  conditional E-value: 1.9e-06
     DUF4413  19 kkllkewakseddllskmaekmqekfdkywk..........ksnlllaiaviLDPryKlkyvefalkkiy.gedakkvvdkvrdklk 94 
                   ll++w ++ + +++ + ++++ k   y +          k+++++  +  LDP +K + + +  +++  ++da+k++d+v++ + 
  KOO21393.1  34 DLLLDNW-DKITTVCNGVQNEVEAKQLMYTTgeqkcsksplKVQMYIGASSTLDPLFKADKLMIRAQQLVaEQDAEKYTDAVDRYIA 119
                 5555555.444455555555555555555544555555666******************88888888888577799****9998876 PP

>> G6B  G6B family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   1.9e-05      0.17      65     114 ..      21      70 ..       2     166 .. 0.71

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 1.9e-05
         G6B  65 GrlraldpgirrlelllsaGdsGtfiCkGrqee.esrtvlkvlgdradCka 114
                   l  l  g+ r++lll + d  t +C+G q+e e++ ++   g++ +C  
  KOO21393.1  21 AELARLPAGLARIDLLLDNWDKITTVCNGVQNEvEAKQLMYTTGEQ-KCSK 70 
                 56778889*********************88763666666666655.4543 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (176 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       688  (0.0383736); expected 358.6 (0.02)
Passed bias filter:                      446  (0.0248759); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.42u 0.24s 00:00:00.65 Elapsed: 00:00:00.41
# Mc/sec: 1281.91
//
Query:       KOO21394.1  [L=312]
Description: 3-hydroxybutyryl- dehydrogenase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    4.1e-25   88.7   0.0    5.4e-25   88.3   0.0    1.1  1  3HCDH_N        3-hydroxyacyl-CoA dehydrogenase, NAD binding d
    2.7e-14   52.8   6.5    5.3e-14   51.8   6.5    1.5  1  zf-C3HC4_3     Zinc finger, C3HC4 type (RING finger)
    2.9e-05   23.9   5.0    3.1e-05   23.7   3.0    2.2  2  zf-C3HC4       Zinc finger, C3HC4 type (RING finger)
    3.6e-05   24.0   7.9    0.00012   22.3   7.9    2.0  1  zf-RING_2      Ring finger domain
    6.9e-05   22.6   8.2    0.00015   21.5   8.2    1.6  1  Prok-RING_4    Prokaryotic RING finger family 4
    0.00035   20.5   4.9    0.00085   19.2   4.9    1.7  1  zf-RING_5      zinc-RING finger domain
  ------ inclusion threshold ------
       0.01   15.4   0.0      0.018   14.6   0.0    1.4  1  AAA_7          P-loop containing dynein motor region
       0.04   13.8   7.1       0.17   11.7   7.1    2.2  1  zf-C3HC4_2     Zinc finger, C3HC4 type (RING finger)
      0.049   13.8   0.0      0.095   12.9   0.0    1.4  1  NAD_binding_2  NAD binding domain of 6-phosphogluconate dehyd
       0.17   11.4   0.0       0.23   11.0   0.0    1.2  1  adh_short_C2   Enoyl-(Acyl carrier protein) reductase
       0.78   10.0   3.2        1.9    8.8   3.2    1.6  1  zf-C4H2        Zinc finger-containing protein


Domain annotation for each model (and alignments):
>> 3HCDH_N  3-hydroxyacyl-CoA dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   88.3   0.0   3.3e-28   5.4e-25      10     170 ..       1     171 [.       1     176 [. 0.94

  Alignments for each domain:
  == domain 1  score: 88.3 bits;  conditional E-value: 3.3e-28
                 CHHHHHHHHHHTT-EEEEE-S-HHHHHHHHHHHHHHHHCCTTTTSS-HHHHCCCHHCEEEES-HHHHH.C-SEEEE-S-SSHHHHHHHHHHHHCCS-TT CS
     3HCDH_N  10 mGagiaavfasagleVvlvdiseealekalekieksleklvekgklkeeeveaalarisfttdleeav.dadlviEavvEnlelKrkvfaelekiakpd 107
                 mG  ia  f+++g++Vvl+d +e + ++a +++++sl   v++g l +++ve++++ri++++ le+   + +lviE+v+E+ +lK+++f+++ +i+k +
  KOO21394.1   1 MGCAIAGEFVRRGCTVVLYDHTEYTRTRAFQTLRASLWDHVANGYLLKQDVESVMSRITTADTLEDTLeRSELVIESVFEDAQLKKELFNQMCEILKGR 99 
                 9*******************************************************************9***********************9998655 PP

                 SE......EEE--SSS-HHHHCCCSSSGGG...EEEEEE-SSTTT--EEEEEE-TT--HHHHHHHHHHHHHT CS
     3HCDH_N 108 ai......lasnTSslsiselaealkrper...viglHFfnPpplmkLvEvvrgekTseetvatvvelakki 170
                 a+      l+s T +ls++ + e+++ +e    ++gl F+ P+  +  vE+   + T+ +t++ + +++k++
  KOO21394.1 100 AVppdqitLCSGTMALSMQSIIEDIQAKEYrgsCLGLRFLHPVWFIDDVEITDCDYTRRSTCNSLEKMLKQL 171
                 543443359****************99887788**********************************99986 PP

>> zf-C3HC4_3  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.8   6.5   3.3e-17   5.3e-14       2      50 .]     256     305 ..     255     305 .. 0.95

  Alignments for each domain:
  == domain 1  score: 51.8 bits;  conditional E-value: 3.3e-17
                 GSB-TTTSSSBS-EEETTEEEEEE-HHHHHHHHH.TT-B-TTT--B--EE CS
  zf-C3HC4_3   2 deeCviClerprnvvllpCgHlvlCeeCaekllk.rkkkCpiCrrpiekv 50 
                  e+C +Cle+pr+++l+pCgH+++C +Ca+k+l   ++ C +Cr+piek+
  KOO21394.1 256 AEPCAVCLEEPRSALLVPCGHMAMCIDCADKVLHgPRPICVVCREPIEKI 305
                 578******************************99************985 PP

>> zf-C3HC4  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.0         5   8.2e+03      28      39 ..     193     203 ..     191     204 .. 0.66
   2 !   23.7   3.0   1.9e-08   3.1e-05       1      41 []     259     298 ..     259     298 .. 0.90

  Alignments for each domain:
  == domain 1  score: -3.2 bits;  conditional E-value: 5
                 HHHHCTSSB--T CS
    zf-C3HC4  28 kilksrkkvkCP 39 
                 ++++ r+   CP
  KOO21394.1 193 TYQS-RQRLRCP 203
                 4455.8888899 PP

  == domain 2  score: 23.7 bits;  conditional E-value: 1.9e-08
                 -TTT-S--SS-E.E-TTS--.B-CHHHHHHHHCTSSB-.-TTT CS
    zf-C3HC4   1 CpiCleeakepnelleCkHs.fCskCirkilksrkkvk.CPlC 41 
                 C++Clee+  +  l +C+H  +C +C +k+l   + ++ C +C
  KOO21394.1 259 CAVCLEEPRSAL-LVPCGHMaMCIDCADKVLH--GPRPiCVVC 298
                 ************.******99**********9..555558888 PP

>> zf-RING_2  Ring finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.3   7.9   7.6e-08   0.00012       3      44 .]     259     299 ..     257     299 .. 0.85

  Alignments for each domain:
  == domain 1  score: 22.3 bits;  conditional E-value: 7.6e-08
   zf-RING_2   3 CpICleelssadsvlllpCgHv.fhreClerwlrssst..CPlCr 44 
                 C++Cl   ++++s+ll+pCgH+ ++ +C+++ l + ++  C +Cr
  KOO21394.1 259 CAVCL---EEPRSALLVPCGHMaMCIDCADKVL-HGPRpiCVVCR 299
                 ****9...7778999999***99********65.555567****9 PP

>> Prok-RING_4  Prokaryotic RING finger family 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.5   8.2   9.2e-08   0.00015       1      37 [.     259     299 ..     259     305 .. 0.84

  Alignments for each domain:
  == domain 1  score: 21.5 bits;  conditional E-value: 9.2e-08
  Prok-RING_4   1 CvlCgeqekkailepCgHl.vCkeCfdskdls...sCPlCq 37 
                  C +C e+++ a l+pCgH+ +C +C d+  +     C +C+
   KOO21394.1 259 CAVCLEEPRSALLVPCGHMaMCIDCADKVLHGprpICVVCR 299
                  9****************************888444455555 PP

>> zf-RING_5  zinc-RING finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.2   4.9   5.2e-07   0.00085       2      43 ..     259     299 ..     258     300 .. 0.96

  Alignments for each domain:
  == domain 1  score: 19.2 bits;  conditional E-value: 5.2e-07
   zf-RING_5   2 CnkCfeklskeekfyltsCgHi.fCekClkkll.ekeavCpiCr 43 
                 C +C e+    + + l++CgH+ +C +C++k l +++  C +Cr
  KOO21394.1 259 CAVCLEEP---RSALLVPCGHMaMCIDCADKVLhGPRPICVVCR 299
                 99******...**********999*******************9 PP

>> AAA_7  P-loop containing dynein motor region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.6   0.0   1.1e-05     0.018      51     148 ..      90     193 ..      85     217 .. 0.82

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 1.1e-05
       AAA_7  51 kdllkkldkekylsltinfsaqtsanqlqdiiesklekrrkgvygPpggkklvvFvDDlnmpakekygaqppiel...lRqlldyggwYd...rkklef 143
                 +++++ l+ + + + +i++ + t a ++q+iie+   k  +g        + v F+DD+ +   +     + + l   l+ql+ + ++Yd   r+kl++
  KOO21394.1  90 NQMCEILKGRAVPPDQITLCSGTMALSMQSIIEDIQAKEYRGSCLGLRFLHPVWFIDDVEITDCDYTRRSTCNSLekmLKQLFFQPFFYDgcyRRKLTL 188
                 5666777777888899*************************99999999***************988777665433339*****999999333356666 PP

       AAA_7 144 keikd 148
                 +ei+ 
  KOO21394.1 189 QEITT 193
                 66665 PP

>> zf-C3HC4_2  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   7.1    0.0001      0.17       2      40 .]     259     298 ..     258     303 .. 0.87

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.0001
  zf-C3HC4_2   2 CpiCldmlkdpsvvtpCgHv.fCqkCilrsLeekn.eCPlC 40 
                 C++Cl++   +  + pCgH   C +C ++ L+     C +C
  KOO21394.1 259 CAVCLEEPRSA-LLVPCGHMaMCIDCADKVLHGPRpICVVC 298
                 *********98.999****648*******998766677666 PP

>> NAD_binding_2  NAD binding domain of 6-phosphogluconate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   5.8e-05     0.095      10      95 ..       1     116 [.       1     130 [. 0.78

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 5.8e-05
                    HHHHHHHHHHHTT-EEEEE-SSHHHHHHHHHTT........................EEE-SSHHHHHHHCSEEEE-SSSHHHHHHHHHS.....H CS
  NAD_binding_2  10 MGsnmalnllkagykvavynrtkekveelvaeg........................akaaesieelvasldvvitmvkagkavdevieg.....l 76 
                    MG  +a +++++g++v++y++t+   +++ ++                         +++a+++e+ +++ ++vi  v ++++ ++ +++     l
     KOO21394.1   1 MGCAIAGEFVRRGCTVVLYDHTEYTRTRAFQTLraslwdhvangyllkqdvesvmsrITTADTLEDTLERSELVIESVFEDAQLKKELFNqmceiL 96 
                    9*******************9986666665554477899999999999999999999999999999999999999999999999988888766633 PP

                    C.CC--TT-EEEE-S---HH CS
  NAD_binding_2  77 l.ealkkgdilidgstsspe 95 
                    + +a+ +++i + ++t++ +
     KOO21394.1  97 KgRAVPPDQITLCSGTMALS 116
                    32334666776666666554 PP

>> adh_short_C2  Enoyl-(Acyl carrier protein) reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   0.00014      0.23       6      76 ..       1      77 [.       1      94 [. 0.85

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00014
                  HHHHHHHHHHHTT-EEEEEESSGGH.HHHHHHHHHHTTSEE.....EE--TTSHHHHHHHHHHHHHHHSSEEEEEE- CS
  adh_short_C2  6 IGraiAkalaeeGaevvltdlneea.kkrveelaeelgaev.....lecDVtdeeqvealveevvekfgklDilvnn 76
                  +G aiA ++ ++G++vvl d  e    ++ ++l ++l  +v     l+ DV++  +  ++++++++++++   ++ +
    KOO21394.1  1 MGCAIAGEFVRRGCTVVLYDHTEYTrTRAFQTLRASLWDHVangylLKQDVESVMSRITTADTLEDTLERSELVIES 77
                  699*********************9899999999999877446668999*999999999999999988887777766 PP

>> zf-C4H2  Zinc finger-containing protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.8   3.2    0.0012       1.9      92     199 ..      47     299 ..      22     301 .. 0.55

  Alignments for each domain:
  == domain 1  score: 8.8 bits;  conditional E-value: 0.0012
     zf-C4H2  92 lkeevnelrse.lglekledleeeeeellkeeifekqklk........................................................... 130
                 lk++v+++ s  +  ++led + e +el+ e++fe  +lk                                                           
  KOO21394.1  47 LKQDVESVMSRiTTADTLED-TLERSELVIESVFEDAQLKkelfnqmceilkgravppdqitlcsgtmalsmqsiiediqakeyrgsclglrflhpvwf 144
                 45555555555444455555.333333444455555555545555555555555555555555555555555555666666688888888888888888 PP

     zf-C4H2 131 .........................................................................aaavelkkesstapappapptsllsk 156
                                                                                                                    
  KOO21394.1 145 iddveitdcdytrrstcnslekmlkqlffqpffydgcyrrkltlqeittyqsrqrlrcpdpitsvpkrglrrkG------------------------- 218
                 88888888888888888888888888888888888888887777555444444444444444333333333330......................... PP

     zf-C4H2 157 ss........................qapsapstatasfrqqp.........................PPMKsClsChqqI.HRNAPiCPlCK 199
                                            +p            qp                           M +C  C  ++ H   PiC +C+
  KOO21394.1 219 -IlgspgspsgaadrtppcspempagATP-----------MQPpempedaepcavcleeprsallvpcGHMAMCIDCADKVlHGPRPICVVCR 299
                 .1333322222222211211211111111...........111122222222333333335556654456*******98754**********7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (312 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       642  (0.0358079); expected 358.6 (0.02)
Passed bias filter:                      525  (0.0292822); expected 358.6 (0.02)
Passed Vit filter:                        58  (0.00323498); expected 17.9 (0.001)
Passed Fwd filter:                        13  (0.000725082); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.49u 0.27s 00:00:00.76 Elapsed: 00:00:00.42
# Mc/sec: 2207.79
//
Query:       KOO21395.1  [L=665]
Description: ghmp kinase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.8e-10   39.9   0.2    1.9e-09   37.6   0.0    2.3  2  GHMP_kinases_N   GHMP kinases N terminal domain
    6.9e-07   29.1   0.0    4.3e-06   26.5   0.0    2.0  2  NTP_transferase  Nucleotidyl transferase
  ------ inclusion threshold ------
      0.011   15.3   0.1      0.045   13.3   0.0    2.0  2  GalKase_gal_bdg  Galactokinase galactose-binding signature


Domain annotation for each model (and alignments):
>> GHMP_kinases_N  GHMP kinases N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.6   0.0   3.1e-13   1.9e-09       5      62 ..     119     178 ..     117     181 .. 0.84
   2 ?   -1.9   0.2      0.71   4.2e+03      17      46 ..     495     522 ..     495     532 .. 0.71

  Alignments for each domain:
  == domain 1  score: 37.6 bits;  conditional E-value: 3.1e-13
                     EESSHTTSSSCHHHHHHHHHHHHHHHHTTEHH...HHHHHHHHHHHHHHHHHHHSHHHHHH CS
  GHMP_kinases_N   5 kseiPvgaGLGSSAAlavalvaAllallglsl...eeaklaleaerlaqggngsggDvaas 62 
                     k+++P+ +GL+SSAA++v +++A+++l++l+l    e++la+ +e       ++ +D++++
      KOO21395.1 119 KTDLPDRKGLSSSAAACVLIARAFNRLYDLKLtvrGEMDLAYHGEITTP-SQCGRMDQCCA 178
                     789*************************999744333888888886655.88******887 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 0.71
                     HHHHHHHHHHHHHHHTTEHHHHHHHHHHHH CS
  GHMP_kinases_N  17 SAAlavalvaAllallglsleeaklaleae 46 
                     S++ + +++  + a+ g sl    l  +ae
      KOO21395.1 495 SSTGTSCVAQLVSAYAGRSL--IALRRTAE 522
                     78889999999999999886..44444444 PP

>> NTP_transferase  Nucleotidyl transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.3   0.0      0.11   6.5e+02      27      58 ..     245     275 ..     235     281 .. 0.78
   2 !   26.5   0.0   7.2e-10   4.3e-06      12     181 ..     370     584 ..     360     609 .. 0.85

  Alignments for each domain:
  == domain 1  score: -0.3 bits;  conditional E-value: 0.11
                      ETTETETTHHHHHHHHHTT-SEEEEEEETTTH CS
  NTP_transferase  27 vlgkerliqatlsrlansgieeiivvltqehs 58 
                        +k rl+ +t+s+la+ +i ++   + ++++
       KOO21395.1 245 PTNK-RLVTQTMSALADGDIARVGALMVEYQA 275
                      4566.*****************7777776665 PP

  == domain 2  score: 26.5 bits;  conditional E-value: 7.2e-10
                      GGTTCCTTSSGGGSEETTET....ETTHHHHHHHHHTT-SEEEEEEETTTHHHHHHHHTTSGGGT....................SEEEEEEES CS
  NTP_transferase  12 RLwPLtrtlakklvpvlgke....rliqatlsrlansgieeiivvltqehsflveeqlkegskfg....................vevlialep 81 
                       L+P ++ l++ l+pv++ +    + i + +++++++g +++++v++  + + +e+ +++++ ++                     +v  ++++
       KOO21395.1 370 ALFPASKCLPPALFPVMDADgllkPAILILVEEAIAAGLHRVVIVVSAAQHADFETIFHKQASMReynrvperlrqyadsivemgRKVHLVVQE 463
                      599**************9986666788899999999********************99999988899**************9999999****** PP

                      S--BGGHHHHHTHHHHTTSSE..EEEEETTEEEEST.THHHHHHHHHTHSSTT.SEEEEEEESS-CTTSEEEEEC...........TTSBEEEE CS
  NTP_transferase  82 egkgtAdAvalaaelledeksdelvlvLggDhlikd.ayeeavkkaiekaakg.tvtfgivpveeateyGviead...........eegrverf 162
                      e+ g+ +Av+ a+  le       ++ + gDhl++  + + +v++ +++ a   ++++  + + + +  G +  +            + +   +
       KOO21395.1 464 EQHGLGHAVLCARAALEPAP----FVLMLGDHLYRSsTGTSCVAQLVSAYAGRsLIALRRTAEIDISHLGTACGNweatrdapaafRRLALSAL 553
                      ****************9888....788889*****988888999988888876799999999999999999887777767666554444999** PP

                      ECS-SSHSH............CSEECCSEEE CS
  NTP_transferase 163 vEKPkeaka............selassGiYv 181
                      vEKP+++ a            ++l + G+Yv
       KOO21395.1 554 VEKPSTDYAranlvtpglpngEYLTAFGLYV 584
                      *****99998777777777776677777776 PP

>> GalKase_gal_bdg  Galactokinase galactose-binding signature
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.0   7.5e-06     0.045      15      31 ..      10      26 ..       7      28 .. 0.90
   2 ?   -1.8   0.0       0.4   2.4e+03       2      20 ..     422     443 ..     421     444 .. 0.81

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 7.5e-06
                     EEEEEEEEE--S-TTTT CS
  GalKase_gal_bdg 15 sAPGRvnLiGEHtDYng 31
                     + PGR+ L+GEH D +g
       KOO21395.1 10 FVPGRICLLGEHSDWAG 26
                     68************976 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 0.4
                      HHHHHHS--.-..EEEEEEEEE CS
  GalKase_gal_bdg   2 eFqktFgke.p..fvasAPGRv 20 
                       F+ +F+k+     + + P+R+
       KOO21395.1 422 DFETIFHKQaSmrEYNRVPERL 443
                      5999**9996467999999995 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (665 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       533  (0.0297284); expected 358.6 (0.02)
Passed bias filter:                      507  (0.0282782); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.59u 0.32s 00:00:00.90 Elapsed: 00:00:00.49
# Mc/sec: 4056.45
//
Query:       KOO21396.1  [L=174]
Description: hypothetical protein Ctob_005307 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (174 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       388  (0.0216409); expected 358.6 (0.02)
Passed bias filter:                      243  (0.0135535); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.39u 0.25s 00:00:00.64 Elapsed: 00:00:00.40
# Mc/sec: 1320.70
//
Query:       KOO21397.1  [L=118]
Description: hypothetical protein Ctob_005308 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
     0.0058   15.6  12.0     0.0061   15.5  12.0    1.0  1  Spc7             Spc7 kinetochore protein
  ------ inclusion threshold ------
      0.019   14.6   4.4      0.023   14.4   4.4    1.2  1  YkyA             Putative cell-wall binding lipoprotein
      0.088   13.3   2.0        2.4    8.7   0.2    2.2  2  Harakiri         Activator of apoptosis harakiri
       0.29   10.9   5.4       0.14   11.9   1.3    2.1  2  Phage_GP20       Phage minor structural protein GP20
       0.42   11.1   8.4        7.1    7.2   8.3    2.1  1  DUF16            Protein of unknown function DUF16
        1.1    9.1   8.3          2    8.2   1.0    2.2  2  Viral_P18        ssRNA positive strand viral 18kD cysteine ri
          2    8.5   5.2          1    9.4   3.4    1.4  1  MCU              Mitochondrial calcium uniporter
        4.2    8.1  10.2        1.1    9.9   1.0    2.1  2  YabA             Initiation control protein YabA
        4.4    6.8   9.9        3.1    7.3   2.8    2.0  2  Fzo_mitofusin    fzo-like conserved region
        7.3    6.4   9.0        2.1    8.2   2.9    2.0  2  DUF501           Protein of unknown function (DUF501)


Domain annotation for each model (and alignments):
>> Spc7  Spc7 kinetochore protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5  12.0   3.4e-06    0.0061     159     256 ..      20     114 ..       4     118 .] 0.90

  Alignments for each domain:
  == domain 1  score: 15.5 bits;  conditional E-value: 3.4e-06
        Spc7 159 ekqeeeldellpeleeekaeleeeleklqeaaeelesidkeeLeelreelaelkaeieekkkelaelqeqleeleekieelkeqkseleeeiaeaerv 256
                 ++q+++l++ l++ +e+ + le++ ++l ++ ++++   ++++++l+++l ++  ++    +++ e+ +qle+l+ ++e  ++ ++ l ++i+  ++ 
  KOO21397.1  20 MAQKALLQQHLEAAVERLDVLEQNERRLLARMQQMDLDHQDRVRQLQRDLLSITRDLG---EQVRERDAQLEALRVQLEGSEQHREALLTQIQDLRKR 114
                 578999****************************99999*************999999...8999999999999999999999999999999987765 PP

>> YkyA  Putative cell-wall binding lipoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.4   4.4   1.3e-05     0.023      10      94 ..      20     104 ..      12     118 .] 0.79

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 1.3e-05
        YkyA  10 leeavelEkefeeqqekLtelekkeqelyeeiielgmdefdkikklsdealenveeReellekekesieeakeefekikeeieei 94 
                 + + + l++++e++ e L  le++e  l  ++ +++ d++d++ +l  ++l+++ +  e++ +  + +e+ + ++e  +++ e +
  KOO21397.1  20 MAQKALLQQHLEAAVERLDVLEQNERRLLARMQQMDLDHQDRVRQLQRDLLSITRDLGEQVRERDAQLEALRVQLEGSEQHREAL 104
                 5566678899****************************************99988888888888888888887777777765544 PP

>> Harakiri  Activator of apoptosis harakiri
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.5   0.1     0.027        48      36      63 ..       7      34 ..       3      56 .. 0.84
   2 ?    8.7   0.2    0.0013       2.4      25      50 ..      80     105 ..      70     117 .. 0.82

  Alignments for each domain:
  == domain 1  score: 4.5 bits;  conditional E-value: 0.027
    Harakiri 36 rlkalgdelhrramrrrarsrdplpall 63
                 l+ + de hr +m ++a  ++ l a++
  KOO21397.1  7 GLQKVHDEWHRESMAQKALLQQHLEAAV 34
                589999********99998887777665 PP

  == domain 2  score: 8.7 bits;  conditional E-value: 0.0013
    Harakiri  25 lrsaaaqltalrlkalgdelhrramr 50 
                 +r   aql alr++  g e hr a+ 
  KOO21397.1  80 VRERDAQLEALRVQLEGSEQHREALL 105
                 68889*****************9984 PP

>> Phage_GP20  Phage minor structural protein GP20
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.3   0.4      0.15   2.8e+02      32      73 ..      28      59 ..       3      75 .. 0.53
   2 ?   11.9   1.3   7.9e-05      0.14      29      67 ..      75     117 ..      55     118 .] 0.82

  Alignments for each domain:
  == domain 1  score: 1.3 bits;  conditional E-value: 0.15
  Phage_GP20 32 eqlkdrdkqLedLkkkakdneeLqkqieelqaknkkakaeye 73
                + l+++ +            + L+++   l a +++ + +++
  KOO21397.1 28 QHLEAAVER----------LDVLEQNERRLLARMQQMDLDHQ 59
                333333333..........33333333334444444444444 PP

  == domain 2  score: 11.9 bits;  conditional E-value: 7.9e-05
  Phage_GP20  29 tlkeqlkdrdkqLedL....kkkakdneeLqkqieelqaknkk 67 
                 +l eq+ +rd qLe L    +++ +  e+L +qi++l + n k
  KOO21397.1  75 DLGEQVRERDAQLEALrvqlEGSEQHREALLTQIQDLRKRNTK 117
                 6889**********762222677778899********999876 PP

>> DUF16  Protein of unknown function DUF16
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.2   8.3     0.004       7.1      47      98 ..      63     114 ..       8     117 .. 0.76

  Alignments for each domain:
  == domain 1  score: 7.2 bits;  conditional E-value: 0.004
                 .HHHHHHHHHHHHHHHHHHHHHHHHHHHHH.......HHHHHHHHHHHHHHH CS
       DUF16  47 geqinkleqkvekqgekikelkveqkaqgeelnkvdetleliletLqkinkR 98 
                  + +  l  + + +ge+++e  ++ +a + +l+  ++  e +l  +q++ kR
  KOO21397.1  63 RQLQRDLLSITRDLGEQVRERDAQLEALRVQLEGSEQHREALLTQIQDLRKR 114
                 2333445667899*************************************99 PP

>> Viral_P18  ssRNA positive strand viral 18kD cysteine rich protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.3   1.2    0.0087        16      82     106 ..      33      60 ..       9      71 .. 0.72
   2 ?    8.2   1.0    0.0011         2      75     105 ..      83     114 ..      76     118 .] 0.82

  Alignments for each domain:
  == domain 1  score: 5.3 bits;  conditional E-value: 0.0087
   Viral_P18  82 l..kldrlearresllasiqkk.lkayd 106
                    +ld le+++  lla++q+  l   d
  KOO21397.1  33 AveRLDVLEQNERRLLARMQQMdLDHQD 60 
                 1348999***********9874255555 PP

  == domain 2  score: 8.2 bits;  conditional E-value: 0.0011
   Viral_P18  75 kdvsddel..kldrlearresllasiqkklkay 105
                 +d++++ l  +l+  e++re+ll++i + l++ 
  KOO21397.1  83 RDAQLEALrvQLEGSEQHREALLTQI-QDLRKR 114
                 8999999988999*************.555544 PP

>> MCU  Mitochondrial calcium uniporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   3.4   0.00057         1       3      82 ..      32     106 ..      30     117 .. 0.80

  Alignments for each domain:
  == domain 1  score: 9.4 bits;  conditional E-value: 0.00057
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-SSSSSSTSSSSSHHHHHHHHHHHHH-SHHHHHHHHTCC CS
         MCU   3 egieaaavlsesgvvialstlleeeeakvllrvkqlvkalesalnveeeqlkkereleekleelreelepleekkeeide 82 
                  ++e++ vl++++ +++++      ++++l++ + + +  +++l++++   +++re +++le+lr +le  e+ +e +  
  KOO21397.1  32 AAVERLDVLEQNERRLLARM-----QQMDLDHQDRVRQLQRDLLSITRDLGEQVRERDAQLEALRVQLEGSEQHREALLT 106
                 67899999999999999999.....567777777777767777777788889999999**************99887755 PP

>> YabA  Initiation control protein YabA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.1   2.7     0.083   1.5e+02       9      49 ..      22      63 ..      13      71 .. 0.57
   2 ?    9.9   1.0   0.00061       1.1       4      52 ..      67     115 ..      65     118 .] 0.90

  Alignments for each domain:
  == domain 1  score: 3.1 bits;  conditional E-value: 0.083
                HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH.HHH CS
        YabA  9 kleeleeqleelleeleelkeelaelleenaeLelene.klr 49
                + + l+++le+ +e+l+ l+++  +ll + +++ l+ + ++r
  KOO21397.1 22 QKALLQQHLEAAVERLDVLEQNERRLLARMQQMDLDHQdRVR 63
                444566666666666666666666666666666665431333 PP

  == domain 2  score: 9.9 bits;  conditional E-value: 0.00061
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
        YabA   4 kelfdkleeleeqleelleeleelkeelaelleenaeLeleneklrerl 52 
                 ++l++  ++l eq++e  ++le+l+ +l+   ++ ++L ++ + lr+r 
  KOO21397.1  67 RDLLSITRDLGEQVRERDAQLEALRVQLEGSEQHREALLTQIQDLRKRN 115
                 6788888999************************************986 PP

>> Fzo_mitofusin  fzo-like conserved region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.9   1.4     0.019        35      96     138 ..       5      47 ..       2      59 .. 0.75
   2 ?    7.3   2.8    0.0017       3.1      89     145 ..      59     115 ..      48     117 .. 0.88

  Alignments for each domain:
  == domain 1  score: 3.9 bits;  conditional E-value: 0.019
  Fzo_mitofusin  96 qqelsstfarlcqqvdetekeleeeikelekeiekleevqkka 138
                     q l+++++++++++  +++ l++++++  ++++ le+ ++++
     KOO21397.1   5 VQGLQKVHDEWHRESMAQKALLQQHLEAAVERLDVLEQNERRL 47 
                    5778899999999999998888888877777777777766654 PP

  == domain 2  score: 7.3 bits;  conditional E-value: 0.0017
  Fzo_mitofusin  89 ancshqvqqelsstfarlcqqvdetekeleeeikelekeiekleevqkkakllrnka 145
                    ++   q+q++l s    l +qv+e +++le+   +le + ++ e++ ++ + lr++ 
     KOO21397.1  59 QDRVRQLQRDLLSITRDLGEQVRERDAQLEALRVQLEGSEQHREALLTQIQDLRKRN 115
                    555689********************************9999999999999999986 PP

>> DUF501  Protein of unknown function (DUF501)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.2   2.9    0.0012       2.1      51      98 ..       7      54 ..       4      67 .. 0.85
   2 ?    2.2   0.8     0.082   1.5e+02      53      89 ..      74     110 ..      55     118 .] 0.70

  Alignments for each domain:
  == domain 1  score: 8.2 bits;  conditional E-value: 0.0012
      DUF501 51 lvkaleeklaedeelaqalekahaeyaakReellteeerseleksees 98
                + ++++++ ++++ +++al ++h e+a +R ++l+++er+ l + +++
  KOO21397.1  7 GLQKVHDEWHRESMAQKALLQQHLEAAVERLDVLEQNERRLLARMQQM 54
                67899999999999*************************999776665 PP

  == domain 2  score: 2.2 bits;  conditional E-value: 0.082
      DUF501  53 kaleeklaedeelaqalekahaeyaakReellteeer 89 
                 ++l e+++e ++  +al+ + +   + Re llt++++
  KOO21397.1  74 RDLGEQVRERDAQLEALRVQLEGSEQHREALLTQIQD 110
                 4566777888888888888888888888888887765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (118 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1690  (0.0942607); expected 358.6 (0.02)
Passed bias filter:                      481  (0.026828); expected 358.6 (0.02)
Passed Vit filter:                        61  (0.00340231); expected 17.9 (0.001)
Passed Fwd filter:                        14  (0.000780858); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.46u 0.28s 00:00:00.74 Elapsed: 00:00:00.47
# Mc/sec: 748.78
//
Query:       KOO21398.1  [L=572]
Description: leucine zipper transcription factor-like protein 1 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.3e-29  102.8   5.4    2.3e-29  102.8   5.4    1.8  2  Leu_zip        Leucine zipper
    5.1e-09   35.5   0.8     0.0013   18.6   0.0    4.0  3  LRR_6          Leucine Rich repeat
  ------ inclusion threshold ------
      0.029   14.6   3.0        1.9    8.8   0.1    2.7  2  HALZ           Homeobox associated leucine zipper
      0.033   14.5  16.1       0.13   12.6   1.8    3.4  3  THOC7          Tho complex subunit 7
       0.14   11.5   1.7       0.28   10.5   1.7    1.6  1  CDC73_N        Paf1 complex subunit CDC73 N-terminal
       0.14   10.9   2.0        0.3    9.9   2.0    1.4  1  ALMT           Aluminium activated malate transporter
       0.16   12.4   0.7         62    4.2   0.3    3.3  4  LRR_4          Leucine Rich repeats (2 copies)
       0.23   11.7  11.3      0.045   14.0   2.8    3.0  3  Seryl_tRNA_N   Seryl-tRNA synthetase N-terminal domain
       0.63    9.3  15.3      0.074   12.4  10.2    2.0  2  DUF4407        Domain of unknown function (DUF4407)
       0.68    8.8  10.8       0.34    9.7   4.5    2.4  2  Spc7           Spc7 kinetochore protein
        0.8    9.2  13.1       0.66    9.5  10.6    2.2  2  HAUS6_N        HAUS augmin-like complex subunit 6 N-terminus
       0.92    9.6   6.8       0.22   11.6   2.3    2.3  2  Bap31_Bap29_C  Bap31/Bap29 cytoplasmic coiled-coil domain
       0.96    9.9   6.7       0.15   12.5   1.8    2.1  2  Syntaxin_2     Syntaxin-like protein
          2    7.9  12.9       0.14   11.7   6.6    2.1  2  HAUS-augmin3   HAUS augmin-like complex subunit 3
        2.3    8.9   6.5        1.4    9.6   2.1    2.6  2  YabA           Initiation control protein YabA


Domain annotation for each model (and alignments):
>> Leu_zip  Leucine zipper
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.1       0.9   1.1e+03     124     157 ..      13      46 ..       6      51 .. 0.83
   2 !  102.8   5.4   1.9e-32   2.3e-29       1     275 [.     281     558 ..     281     559 .. 0.83

  Alignments for each domain:
  == domain 1  score: -1.1 bits;  conditional E-value: 0.9
     Leu_zip 124 egGgaeLLkkeierLkeenekLkerlkelEkqat 157
                 + Gg++L   e er  e  +++++rl+  E+++ 
  KOO21398.1  13 DDGGSALNLDERERTAERRQRMQTRLNYAEERLA 46 
                 4578888888999999999999999999999875 PP

  == domain 2  score: 102.8 bits;  conditional E-value: 1.9e-32
     Leu_zip   1 FarykrgqrlkavdacfqdlkdsRLvedtytvDEvtelldglkavvrgevesELintshtnvLllrqlfsqAEkwh.LklqaDiselenReLlEkiaef 98 
                 F r kr   +  v a f+++++sRL e+ y  DEv+++l+gl ++vr  ++ +L  t + +vLll+q f+qAE    L l ++++  e+  LlE + + 
  KOO21398.1 281 FLRRKRDTAIAEVAAEFKEVNESRLFEESYSADEVANILEGLLTMVRQAMKRDLQSTMFSSVLLLKQAFEQAESNNgLTLTTNLAATEDIGLLEAVEQW 379
                 77999********************************************************************7644********************** PP

     Leu_zip  99 Eekefkss.......nkke.seelkkkkLePlnegGgaeLLkkeierLkeenekLkerlkelEkqatsaleeksklekalkelqkelgekkdekenske 189
                 +++   ss       ++ +    + +  L P+  +     L  +++  +++n  L+er++++  q +++l+eks+l+++++++ +  ++++++ +  ++
  KOO21398.1 380 DRSVHGSSgsapplsARASvVRASPSRTLRPVGMT-QDPRLIADLQGARDDNASLQERFQRMQVQTQQILREKSELQAQVEAMSSGSSDETEALR--AQ 475
                 *9998888444444322221233334448888775.445667899999*********************************99666555554444..66 PP

     Leu_zip 190 iskleeklael.kldlek.tleektasaksleedlastkhelLkvqeqLelaekeLekkfqqtaayknlkemltkkneqikelRkrLs 275
                 +++l+++l++    +      e+  + +++l ++l +++    ++q+ L++a+ eL+ ++++ +++     ml kk + ++ lR+ L+
  KOO21398.1 476 VEQLQAELQAAyDREAAApPPEQPGTGHDTLLRELHDAQDAAAQLQASLDQAQAELDSRLERSTQF-----MLRKKSDVVRHLRETLE 558
                 666666554431223322245566788999********************************9999.....9************9997 PP

>> LRR_6  Leucine Rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.6   0.0   1.1e-06    0.0013       2      24 .]     150     172 ..     149     172 .. 0.95
   2 !    6.4   0.0    0.0089        11       3      16 ..     209     222 ..     207     224 .. 0.86
   3 !    6.4   0.1     0.009        11      12      24 .]     259     271 ..     258     271 .. 0.91

  Alignments for each domain:
  == domain 1  score: 18.6 bits;  conditional E-value: 1.1e-06
       LRR_6   2 nthLteLdLsgNdIgDeGaeaLa 24 
                 n++Lt+L L+ N + DeG++a a
  KOO21398.1 150 NSTLTKLTLANNPLRDEGVQAVA 172
                 9*******************986 PP

  == domain 2  score: 6.4 bits;  conditional E-value: 0.0089
       LRR_6   3 thLteLdLsgNdIg 16 
                 +++t Ld+s+N I 
  KOO21398.1 209 PSITFLDISHNRIC 222
                 68999*******96 PP

  == domain 3  score: 6.4 bits;  conditional E-value: 0.009
       LRR_6  12 gNdIgDeGaeaLa 24 
                 gN++ DeGa+a+a
  KOO21398.1 259 GNGLRDEGASAMA 271
                 8*********987 PP

>> HALZ  Homeobox associated leucine zipper
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.8   0.1    0.0016       1.9       8      38 ..     431     461 ..     428     464 .. 0.90
   2 ?    5.4   0.6     0.018        21      27      43 .]     468     484 ..     466     485 .. 0.75

  Alignments for each domain:
  == domain 1  score: 8.8 bits;  conditional E-value: 0.0016
        HALZ   8 dvLKasYdaLksdydsLkkenekLkaelqeL 38 
                 ++L+ ++  ++ + +++++e+ +L+a+++ +
  KOO21398.1 431 ASLQERFQRMQVQTQQILREKSELQAQVEAM 461
                 579999**********************976 PP

  == domain 2  score: 5.4 bits;  conditional E-value: 0.018
        HALZ  27 enekLkaelqeLkeklq 43 
                 e e+L+a++++L + lq
  KOO21398.1 468 ETEALRAQVEQLQAELQ 484
                 77888888888888775 PP

>> THOC7  Tho complex subunit 7
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.8   0.9      0.46   5.5e+02      65      98 ..      19      52 ..      16      55 .. 0.81
   2 ?   12.6   1.8   0.00011      0.13      48     106 ..     429     484 ..     391     493 .. 0.80
   3 ?    9.4   0.6   0.00099       1.2      78     110 ..     504     536 ..     501     539 .. 0.91

  Alignments for each domain:
  == domain 1  score: 0.8 bits;  conditional E-value: 0.46
       THOC7 65 anerereryeaekeeieseieavreeieelkaqL 98
                 n  erer ++ ++++++ +  ++e  ++ + +L
  KOO21398.1 19 LNLDERERTAERRQRMQTRLNYAEERLARTRLDL 52
                5888999999999999999998888888877655 PP

  == domain 2  score: 12.6 bits;  conditional E-value: 0.00011
       THOC7  48 dfaafelsierlqllakanerereryeaekeeieseieavreeieelkaqLeearatra 106
                 d a+++   +r+q+ ++   re+ +++   +++e+ ++   +e+e+l+aq e+ +a+++
  KOO21398.1 429 DNASLQERFQRMQVQTQQILREKSELQ---AQVEAMSSGSSDETEALRAQVEQLQAELQ 484
                 6688999999*************9999...56777777777777777777777777665 PP

  == domain 3  score: 9.4 bits;  conditional E-value: 0.00099
       THOC7  78 eeieseieavreeieelkaqLeearatranrke 110
                 +++++e+ ++++  ++l+a+L++a+a++++r e
  KOO21398.1 504 DTLLRELHDAQDAAAQLQASLDQAQAELDSRLE 536
                 5678999***********************987 PP

>> CDC73_N  Paf1 complex subunit CDC73 N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   1.7   0.00024      0.28     121     190 ..     424     493 ..     400     558 .. 0.82

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00024
     CDC73_N 121 qvkRsaeeasesaakkprveeeqvqkvkerlaarldaskkeevvttdqikslsealsaekiaaikakrla 190
                 q  R  + + ++++++ +v+++q+ ++k++l+a+++a+++ ++ +t+ +++  e+l ae  aa    + a
  KOO21398.1 424 QGARDDNASLQERFQRMQVQTQQILREKSELQAQVEAMSSGSSDETEALRAQVEQLQAELQAAYDREAAA 493
                 4455445558999**********************************************99997766555 PP

>> ALMT  Aluminium activated malate transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   2.0   0.00025       0.3     284     415 ..     422     548 ..     416     567 .. 0.67

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.00025
        ALMT 284 eiqapeelrkkfkeelqrvslesakvlrelaesvkkmkklsk.veellkevkvaaeeLqskldskskLlvnsekweaakkkekaeeveekkeeekeses 381
                 + q +++ ++ ++e +qr+  +  ++lre++e   + +  s+ +++  + ++  +e+Lq++l+  +       +++aa   e+ ++ +++  +e ++ +
  KOO21398.1 422 DLQGARDDNASLQERFQRMQVQTQQILREKSELQAQVEAMSSgSSDETEALRAQVEQLQAELQAAYD------REAAAPPPEQPGTGHDTLLRELHDAQ 514
                 678899999********************9999999998888778999999***********88773......33344444444444444444444444 PP

        ALMT 382 kkeeaeaveeaeseseksllkeskrslklskkes 415
                 +  ++ + +  ++++e +++ e++++++l+kk+ 
  KOO21398.1 515 DAAAQLQASLDQAQAELDSRLERSTQFMLRKKSD 548
                 4444444444444444444444444455444444 PP

>> LRR_4  Leucine Rich repeats (2 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.0   0.2      0.06        72       3      15 ..     153     165 ..     130     168 .. 0.67
   2 ?    4.2   0.3     0.052        62       3      18 ..     153     168 ..     151     194 .. 0.72
   3 ?    4.0   0.0     0.062        74      22      35 ..     208     220 ..     181     225 .. 0.59
   4 ?   -0.5   0.0       1.6   1.9e+03       3      16 ..     252     265 ..     250     272 .. 0.82

  Alignments for each domain:
  == domain 1  score: 4.0 bits;  conditional E-value: 0.06
                 --EEE--SS---E CS
       LRR_4   3 LevLdLsnNqltd 15 
                 L++L L+nN l+d
  KOO21398.1 153 LTKLTLANNPLRD 165
                 5555555555554 PP

  == domain 2  score: 4.2 bits;  conditional E-value: 0.052
                 --EEE--SS---E-S- CS
       LRR_4   3 LevLdLsnNqltdipl 18 
                 L++L L+nN l+d + 
  KOO21398.1 153 LTKLTLANNPLRDEGV 168
                 8999999999988655 PP

  == domain 3  score: 4.0 bits;  conditional E-value: 0.062
                 -TT--EEE-.-S-- CS
       LRR_4  22 lpnLkeLdLsgNnl 35 
                  p+ + Ld+s+N +
  KOO21398.1 208 TPSITFLDISHN-R 220
                 566666666666.3 PP

  == domain 4  score: -0.5 bits;  conditional E-value: 1.6
                 --EEE--SS---E- CS
       LRR_4   3 LevLdLsnNqltdi 16 
                 L +L +++N l+d 
  KOO21398.1 252 LVTLLCNGNGLRDE 265
                 78999**9999985 PP

>> Seryl_tRNA_N  Seryl-tRNA synthetase N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.1       5.1   6.1e+03      24      46 ..      17      39 ..       9      45 .. 0.62
   2 ?   14.0   2.8   3.7e-05     0.045      32      91 ..     431     491 ..     419     494 .. 0.88
   3 ?    2.3   0.1      0.16     2e+02      70      99 ..     504     533 ..     497     568 .. 0.79

  Alignments for each domain:
  == domain 1  score: -2.5 bits;  conditional E-value: 5.1
                  CCHHHHHHHHHHHHHHHHHHHHH CS
  Seryl_tRNA_N 24 dkadvdelleldekrrelqvele 46
                  +++++de     e+r+++q++l+
    KOO21398.1 17 SALNLDERERTAERRQRMQTRLN 39
                  55556666666666666666554 PP

  == domain 2  score: 14.0 bits;  conditional E-value: 3.7e-05
                   HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCTT.S-TCCCCCCCHHHHHHHHHHHHHHH CS
  Seryl_tRNA_N  32 leldekrrelqveleelqaerNelskeIgkakkkk.edaeeliaevkelkeelkaleaelk 91 
                    +l+e+ +++qv+++++ +e+ el+++++ ++    +++e+l+a+v++l++el+a+ ++++
    KOO21398.1 431 ASLQERFQRMQVQTQQILREKSELQAQVEAMSSGSsDETEALRAQVEQLQAELQAAYDREA 491
                   68999999********************987766689****************99877665 PP

  == domain 3  score: 2.3 bits;  conditional E-value: 0.16
                   CCCCCCCHHHHHHHHHHHHHHHHHHHHHHH CS
  Seryl_tRNA_N  70 eeliaevkelkeelkaleaelkeleaelek 99 
                   + l+ e  + ++  ++l+a l++++ael++
    KOO21398.1 504 DTLLRELHDAQDAAAQLQASLDQAQAELDS 533
                   566677777777777777777777777765 PP

>> DUF4407  Domain of unknown function (DUF4407)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.2       1.5   1.8e+03     135     171 ..      24      60 ..       5      98 .. 0.59
   2 ?   12.4  10.2   6.2e-05     0.074     117     217 ..     444     540 ..     418     566 .. 0.51

  Alignments for each domain:
  == domain 1  score: -2.0 bits;  conditional E-value: 1.5
     DUF4407 135 laeleaqiaalqaeidaaearldalraeaqkeldgtk 171
                  ++  ++++++q+ ++ ae+rl+++r ++    +g+ 
  KOO21398.1  24 RERTAERRQRMQTRLNYAEERLARTRLDLILAPHGEL 60 
                 3344444556677777777777776666666655555 PP

  == domain 2  score: 12.4 bits;  conditional E-value: 6.2e-05
     DUF4407 117 qeeakelkeqlaaaltaelaeleaqia....alqaeidaaearldalraeaqkeldgtk........gtgttgvaGkgpaakekkaqldaaqaelaelk 203
                  ++              e +el+aq++      + e +a++a++++l+ae+q+ +d +         gtg         + + ++++++++qa l++++
  KOO21398.1 444 TQQ-----------ILREKSELQAQVEamssGSSDETEALRAQVEQLQAELQAAYDREAaapppeqpGTG---HDTLLRELHDAQDAAAQLQASLDQAQ 528
                 222...........22333344444443333344445555555555555555555543332222212444...44455555667777777777777777 PP

     DUF4407 204 akldatarlaalra 217
                 a+   ++rl++  +
  KOO21398.1 529 AE--LDSRLERSTQ 540
                 77..4444444333 PP

>> Spc7  Spc7 kinetochore protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   4.5   0.00029      0.34     159     216 ..     427     484 ..     414     493 .. 0.55
   2 ?    2.0   0.4     0.064        77     163     211 ..     511     560 ..     498     571 .. 0.37

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 0.00029
        Spc7 159 ekqeeeldellpeleeekaeleeeleklqeaaeelesidkeeLeelreelaelkaeie 216
                  ++++ l+e  ++++ + +++ +e  +lq+++e ++s  ++e e+lr ++++l+ae++
  KOO21398.1 427 RDDNASLQERFQRMQVQTQQILREKSELQAQVEAMSSGSSDETEALRAQVEQLQAELQ 484
                 3444555555555555555555555555555555555555555555555555555554 PP

  == domain 2  score: 2.0 bits;  conditional E-value: 0.064
        Spc7 163 eeldellpeleeekaeleeeleklqeaaeeles.idkeeLeelreelael 211
                 + ++++  +l++  ++ ++el++  e+++++    +++ ++ lre+l+++
  KOO21398.1 511 HDAQDAAAQLQASLDQAQAELDSRLERSTQFMLrKKSDVVRHLRETLEQH 560
                 22222222222222222222222222222211102344444444444444 PP

>> HAUS6_N  HAUS augmin-like complex subunit 6 N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.0       2.7   3.3e+03     145     173 ..     267     293 ..     260     307 .. 0.69
   2 ?    9.5  10.6   0.00055      0.66     137     216 ..     425     526 ..     406     567 .. 0.81

  Alignments for each domain:
  == domain 1  score: -2.6 bits;  conditional E-value: 2.7
     HAUS6_N 145 lsklvaahrvslrrflrekaaadrarqky 173
                  s++  a  v++ rflr+k++    ++++
  KOO21398.1 267 ASAMARALLVEYLRFLRRKRDTA--IAEV 293
                 56778888888888888888763..4444 PP

  == domain 2  score: 9.5 bits;  conditional E-value: 0.00055
     HAUS6_N 137 aaskkaqdlsklvaahrvslrrflrekaaadrarqkyqenaqllekkerelraeleelqaelkae.........................keaakkekk 210
                  a +++++l++ +++++v+ +++lrek++    +++++  ++  ++++++lra+ e+lqael+a+                          ++ + +++
  KOO21398.1 425 GARDDNASLQERFQRMQVQTQQILREKSEL---QAQVEAMSSGSSDETEALRAQVEQLQAELQAAydreaaapppeqpgtghdtllrelhDAQDAAAQL 520
                 34555669**********************...9*****************************888888888888888888887777776333333444 PP

     HAUS6_N 211 easeda 216
                 +as d+
  KOO21398.1 521 QASLDQ 526
                 444444 PP

>> Bap31_Bap29_C  Bap31/Bap29 cytoplasmic coiled-coil domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   2.3   0.00018      0.22       4      30 ..     452     482 ..     449     492 .. 0.84
   2 ?   -3.4   0.1       8.5     1e+04       5      18 ..     519     532 ..     517     533 .. 0.72

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 0.00018
  Bap31_Bap29_C   4 ekLkkeLkkkk....kDlealKkQaeglakE 30 
                    ++L+++ ++++     + eal+ Q e+l++E
     KOO21398.1 452 SELQAQVEAMSsgssDETEALRAQVEQLQAE 482
                    689999998889999*************998 PP

  == domain 2  score: -3.4 bits;  conditional E-value: 8.5
  Bap31_Bap29_C   5 kLkkeLkkkkkDle 18 
                     L++ L++++++l+
     KOO21398.1 519 QLQASLDQAQAELD 532
                    68888888887765 PP

>> Syntaxin_2  Syntaxin-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   1.8   0.00012      0.15      18      82 ..     419     486 ..     415     489 .. 0.87
   2 ?   -2.0   0.2       3.9   4.6e+03      28      43 ..     517     532 ..     504     560 .. 0.50

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 0.00012
  Syntaxin_2  18 lvkqLgtkk.dteelreklhelieeinelikktnellkklsqldnsssds..qqklqkekLkkdfkea 82 
                 l+ +L+ ++ d+  l+e+++ ++ ++++++++ +el  ++++++  ssd+  + + q e L+ ++++a
  KOO21398.1 419 LIADLQGARdDNASLQERFQRMQVQTQQILREKSELQAQVEAMSSGSSDEteALRAQVEQLQAELQAA 486
                 66677788747************************************999666666999999998876 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 3.9
  Syntaxin_2  28 teelreklhelieein 43 
                   +l+ +l++ + e+ 
  KOO21398.1 517 AAQLQASLDQAQAELD 532
                 3333333333333333 PP

>> HAUS-augmin3  HAUS augmin-like complex subunit 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   6.6   0.00012      0.14      83     155 ..     419     489 ..     413     511 .. 0.86
   2 ?   -1.0   0.5       0.9   1.1e+03      77     100 ..     514     537 ..     502     562 .. 0.45

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.00012
  HAUS-augmin3  83 LeqelqeLqkekalklkrlnkLqvqaaslqqelrkleeeekeakkklkeaqeelraenaetnavLqqlteeak 155
                   L + lq ++  +a++++r++++qvq+ ++ +e+++l+++ ++++    +  e+lra+  +++a+Lq   +  +
    KOO21398.1 419 LIADLQGARDDNASLQERFQRMQVQTQQILREKSELQAQVEAMSSGSSDETEALRAQVEQLQAELQAAYD--R 489
                   55789999999*******************************************************9877..4 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 0.9
  HAUS-augmin3  77 eesleaLeqelqeLqkekalklkr 100
                   ++++ +L++ l+++q e ++ l+r
    KOO21398.1 514 QDAAAQLQASLDQAQAELDSRLER 537
                   333333333333333333333332 PP

>> YabA  Initiation control protein YabA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   2.1    0.0011       1.4       2      73 ..     429     506 ..     428     513 .. 0.73
   2 ?    0.6   0.2      0.72   8.6e+02       6      52 ..     506     557 ..     502     566 .. 0.69

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 0.0011
                 -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH....HHHHHHHHHHHHHHHHHXXXX..XXXXXXXXXXXXXXXXX CS
        YabA   2 dkkelfdkleeleeqleelleeleelkeelaell....eenaeLeleneklrerleeee..kkekekkkelsegkenL 73 
                 d+ +l +++++++ q++++l+e +el+++++++     +e ++L+++ e+l+ +l+ +   ++++   ++ ++g++ L
  KOO21398.1 429 DNASLQERFQRMQVQTQQILREKSELQAQVEAMSsgssDETEALRAQVEQLQAELQAAYdrEAAAPPPEQPGTGHDTL 506
                 5678999*********************999875233379999*********99954440033344445555666555 PP

  == domain 2  score: 0.6 bits;  conditional E-value: 0.72
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH.....HHHHHHHH CS
        YabA   6 lfdkleeleeqleelleeleelkeelaelleenaeLele.....neklrerl 52 
                 l+++l++ ++  ++l+++l++ ++el + le+ +++ l       ++lre+l
  KOO21398.1 506 LLRELHDAQDAAAQLQASLDQAQAELDSRLERSTQFMLRkksdvVRHLRETL 557
                 6667777778888888888888888888888888766654344444555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (572 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1497  (0.083496); expected 358.6 (0.02)
Passed bias filter:                      750  (0.0418317); expected 358.6 (0.02)
Passed Vit filter:                       108  (0.00602376); expected 17.9 (0.001)
Passed Fwd filter:                        40  (0.00223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              15  [number of targets reported over threshold]
# CPU time: 0.78u 0.32s 00:00:01.10 Elapsed: 00:00:00.47
# Mc/sec: 3666.60
//
Query:       KOO21399.1  [L=93]
Description: methylase involved in ubiquinone menaquinone biosynthesis [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.6e-06   27.6   0.0    1.6e-06   27.6   0.0    1.1  1  Ubie_methyltran  ubiE/COQ5 methyltransferase family
    2.4e-06   28.1   0.0    2.7e-06   27.9   0.0    1.2  1  Methyltransf_11  Methyltransferase domain
    3.1e-06   27.1   0.0    3.1e-06   27.0   0.0    1.1  1  Methyltransf_31  Methyltransferase domain
    3.8e-05   24.3   0.0      5e-05   23.9   0.0    1.2  1  Methyltransf_25  Methyltransferase domain
    6.4e-05   23.6   0.0    7.4e-05   23.4   0.0    1.1  1  Methyltransf_12  Methyltransferase domain
    0.00024   21.0   0.0    0.00025   20.9   0.0    1.1  1  Methyltransf_23  Methyltransferase domain
  ------ inclusion threshold ------
        0.1   12.6   0.0       0.12   12.4   0.0    1.1  1  ADH_zinc_N       Zinc-binding dehydrogenase


Domain annotation for each model (and alignments):
>> Ubie_methyltran  ubiE/COQ5 methyltransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.6   0.0   6.2e-10   1.6e-06     118     165 ..      43      90 ..       5      93 .] 0.87

  Alignments for each domain:
  == domain 1  score: 27.6 bits;  conditional E-value: 6.2e-10
                      EEEEEES-GGG-.S-HHHHHHHHHHHEEEEEEEEEEEE----SHHHHHH CS
  Ubie_methyltran 118 DvvtvsfGlrnv.tDklkaLkeayrvlkpGGrlvvlefskvelpllsqa 165
                      D + +s G+ n+ tDk  a+++a+r+lkpGGr++  ++ kve p+++ a
       KOO21399.1  43 D-LVMSNGVFNLtTDKAAAFRSAFRILKPGGRFHLCDLCKVEEPVVDAA 90 
                      4.4579999996379***************************9999876 PP

>> Methyltransf_11  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.9   0.0   1.1e-09   2.7e-06      57      94 ..      37      74 ..       1      76 [. 0.74

  Alignments for each domain:
  == domain 1  score: 27.9 bits;  conditional E-value: 1.1e-09
                     S-TT-EEEEEEES-CCC-CCHHHHHHHHHHHEEEEEEE CS
  Methyltransf_11 57 fednsfDlvvssevlhhvedpekalkeiaRvLkpgGll 94
                     + +n  Dlv+s+ v++   d ++a++ + R+LkpgG++
       KOO21399.1 37 VDENVADLVMSNGVFNLTTDKAAAFRSAFRILKPGGRF 74
                     567899******************************98 PP

>> Methyltransf_31  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.0   0.0   1.2e-09   3.1e-06      46     113 ..       7      80 ..       1      92 [. 0.70

  Alignments for each domain:
  == domain 1  score: 27.0 bits;  conditional E-value: 1.2e-09
  Methyltransf_31  46 enaqklgld...nveFeqgdiee..lekl.ledekfDlilsnevlnaladpdkileeiervlkpggilliedpr 113
                      +n ++l  d    +eF++g   +  l k  + ++  Dl++sn+v+n+++d+++++++++r lkpgg++ ++d +
       KOO21399.1   7 QNVAELAPDcapVIEFKRGLLDDgtLLKGlVDENVADLVMSNGVFNLTTDKAAAFRSAFRILKPGGRFHLCDLC 80 
                      555555555555555655433333233343555889********************************999988 PP

>> Methyltransf_25  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.9   0.0   1.9e-08     5e-05      33      97 .]       1      72 [.       1      72 [. 0.79

  Alignments for each domain:
  == domain 1  score: 23.9 bits;  conditional E-value: 1.9e-08
                     HHHHHHHHHHHTTT....TEEEEESBCCG...BS..SSTTTEEEEEEESTGGGSSHHHHHHHHHHHHHHEEEEE CS
  Methyltransf_25 33 mleaareraeeegl....nvefvqgdaed...lp..fedgsfDlvvssgalhhlsdedlekalkeiarvLkpgG 97
                     ml++a ++++e  +     +ef +g ++d   l+   +++  Dlv+s+g++++++  d ++a++ ++r+LkpgG
       KOO21399.1  1 MLDRASQNVAELAPdcapVIEFKRGLLDDgtlLKglVDENVADLVMSNGVFNLTT--DKAAAFRSAFRILKPGG 72
                     7888999998855555679999888776644344556999*******87799877..6679************9 PP

>> Methyltransf_12  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.4   0.0   2.9e-08   7.4e-05      32      99 .]       1      74 [.       1      74 [. 0.88

  Alignments for each domain:
  == domain 1  score: 23.4 bits;  conditional E-value: 2.9e-08
  Methyltransf_12 32 aiedakeklakrennnnnnvelealdlldldgg......ssfDlvvasnvlhhlkdirevldnirklLkpgGrl 99
                     ++++a++  a+  ++++ ++e++   l+d          +  Dlv +++v++ + d++++++++ + LkpgGr+
       KOO21399.1  1 MLDRASQNVAELAPDCAPVIEFKRGLLDDGTLLkglvdeNVADLVMSNGVFNLTTDKAAAFRSAFRILKPGGRF 74
                     5678888888999999999999988877665558899999********************************96 PP

>> Methyltransf_23  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.9   0.0   9.6e-08   0.00025      79     121 ..      38      80 ..       3      90 .. 0.82

  Alignments for each domain:
  == domain 1  score: 20.9 bits;  conditional E-value: 9.6e-08
  Methyltransf_23  79 pqgkfdlIvlrevlehvpdppellrqiatllkpgGylllsepl 121
                      +++  dl+ ++ v++   d ++++r+++++lkpgG++ l++  
       KOO21399.1  38 DENVADLVMSNGVFNLTTDKAAAFRSAFRILKPGGRFHLCDLC 80 
                      45589**********************************9974 PP

>> ADH_zinc_N  Zinc-binding dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   4.5e-05      0.12      50      93 ..      41      82 ..      25      92 .. 0.75

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 4.5e-05
                HHHHTTTSSEEEEEESSC.SHHHHHHHHHCEEEEEEEEECSCTSS CS
  ADH_zinc_N 50 ikeltggegvdvvfecvG.sgatleaalkllkpgGrlvvvGggkg 93
                +++l      + vf+ +    a++++a+++lkpgGr+ ++ + k 
  KOO21399.1 41 VADLV---MSNGVFNLTTdKAAAFRSAFRILKPGGRFHLCDLCKV 82
                55555...455688888856789***************9977444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (93 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       273  (0.0152267); expected 358.6 (0.02)
Passed bias filter:                      255  (0.0142228); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.36u 0.26s 00:00:00.62 Elapsed: 00:00:00.43
# Mc/sec: 651.31
//
Query:       KOO21400.1  [L=247]
Description: hypothetical protein Ctob_005314 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (247 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       281  (0.0156729); expected 358.6 (0.02)
Passed bias filter:                      253  (0.0141112); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.41u 0.24s 00:00:00.64 Elapsed: 00:00:00.39
# Mc/sec: 1901.21
//
Query:       KOO21401.1  [L=236]
Description: hypothetical protein Ctob_005317 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (236 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       339  (0.0189079); expected 358.6 (0.02)
Passed bias filter:                      323  (0.0180155); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.41u 0.23s 00:00:00.64 Elapsed: 00:00:00.39
# Mc/sec: 1819.34
//
Query:       KOO21402.1  [L=347]
Description: slc34a2-like protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.6e-35  121.2   0.0    7.4e-35  120.8   0.0    1.1  1  Brix      Brix domain


Domain annotation for each model (and alignments):
>> Brix  Brix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  120.8   0.0   4.1e-39   7.4e-35       7     192 ..      42     288 ..      37     289 .. 0.85

  Alignments for each domain:
  == domain 1  score: 120.8 bits;  conditional E-value: 4.1e-39
                 HHHHHHHHHHHHCTTSEEEEEE.ECT-TTTHHHHHHH...-HHHHHHHH.HCTCSEEEEEE..SSTTEEEEEEEEECECTGGGSTTTS.......TS-T CS
        Brix   7 rlrqllkdlrslmkphtasflk.rnsnklkdlvelag...vthlellse.kndcslfvfelskkrPngptlefkvenyslmkdlkkak.......ktef 93 
                 +l+ l++ l+++++p+ta+ l+ +++nkl+d+v +ag   v+ ++++s   ++ +l+++++    P+gptl+f+++++sl +d+ +a+        +  
  KOO21402.1  42 KLKALVENLKRVLSPNTATALRaQKRNKLRDFVDVAGmlhVSFFLIVSAtDKNSYLRLVRC----PRGPTLTFRITSFSLGSDIASAQrkpysagHSVW 136
                 699*******************87779************999999999875555*******....********************999******99999 PP

                 T---EEEEES.HHH.......HHHHHHHHHHH..SEEEG..-B-GG-SEEEEEEES.CCTTTECEEEEEEEEEE...........E..STTTTECT... CS
        Brix  94 gsrPllvfngkenf.......kllksllqdlFrvpkislkspklsglrrvvlftaaenqetdktisfRhYaikl...........kksgkklpnleke. 173
                 +s Pll+++   nf        l  ++lq+lF  p++++++ +l+++rrvvl++  + +e +   ++R+Y ik+              g klp+l+++ 
  KOO21402.1 137 QSAPLLILS---NFdksvqheALSATMLQNLF--PTLNVATARLASFRRVVLVHQLPAAEGG-GCELRQYVIKAaptgvskgvkrLVRGDKLPSLGRYs 229
                 *********...9999999999**********..********************77555545.59********88889999999955555555555556 PP

                 ........................................T..EEEEEEESEEEEEEEE CS
        Brix 174 ........................................kkerveLeEiGPrfdLklr 192
                                                         ++ +++L+E+GPr++L l 
  KOO21402.1 230 dmaeyltrkgyssesgaetdeedktelpqdylhgrntrsqQRVSIKLHEVGPRMSLALL 288
                 66666666666666666666666678888888999988654999************996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (347 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       624  (0.0348039); expected 358.6 (0.02)
Passed bias filter:                      400  (0.0223102); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.23s 00:00:00.66 Elapsed: 00:00:00.37
# Mc/sec: 2825.71
//
Query:       KOO21403.1  [L=582]
Description: tubulin-tyrosine ligase family protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.5e-75  254.1   0.0      2e-75  253.7   0.0    1.1  1  TTL             Tubulin-tyrosine ligase family
    4.3e-05   22.9   0.0       0.11   11.7   0.0    2.6  2  ATPgrasp_YheCD  YheC/D like ATP-grasp
    0.00012   21.4   0.0      0.056   12.7   0.0    2.5  2  ATPgrasp_ST     Sugar-transfer associated ATP-grasp
     0.0063   16.6   0.0      0.023   14.8   0.0    1.8  2  ATP-grasp_3     ATP-grasp domain


Domain annotation for each model (and alignments):
>> TTL  Tubulin-tyrosine ligase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  253.7   0.0   4.5e-79     2e-75       5     285 ..      16     307 ..      12     315 .. 0.93

  Alignments for each domain:
  == domain 1  score: 253.7 bits;  conditional E-value: 4.5e-79
                 TTS-SS-SSS--EEEE--------------------..-------TTHHHHHHHTTTS--S-...B----SS---XX------BSSTHHHHHHHH..SS CS
         TTL   5 edkdqllnhfpnsseitrkdllvknlkrtkkklekklkflprtfvlpadlaefveeaekees...ntwIvKpsasarGkgirvfnkledikkivsqsqk 100
                 +   q++nhfp++ e+ rk+  ++nl+++ k  +k++kf+p+tf+lpad+ +++ e+   +    +t+IvKpsa+++Gkgi++++kl++i        +
  KOO21403.1  16 MGRLQKINHFPGMLELVRKAGTARNLNKMLKACGKDYKFFPKTFMLPADYTQLKAEWAPGQNhgnKTFIVKPSAGCQGKGIYLTRKLDEID------PQ 108
                 5559*****************************************************88777788**************************......99 PP

                 S-EEEEB--SSB--BTTEEEEEEEEEEE-..TT-XXXXXXXXXXXXXXXXXX..XXXXXXXXXXXXXXXXXXXXX.....XXXXXXXXXXXXXXXXXXX CS
         TTL 101 eplvvqkYierPLLidgrKFDlRlyvlvtsvnpLrvYvYkegllRfasvkYspsvsdlddlevHLTNysiqkksk.....slneesnekkgkkwslqel 194
                 ++ vvq+Y++rP L++g K+DlR+yvl++s +pLr+++++egl+R +++kY+p  ++l+++ +HLTNy+i+k+s+     +  e+ ++   +k+++ +l
  KOO21403.1 109 DNSVVQRYLHRPHLLEGYKYDLRIYVLLSSLQPLRIFIFREGLVRVCTEKYQPVEKNLENVQMHLTNYAINKDSEtfvqpEGMEDHEQEGAHKRTITSL 207
                 *************************************************************************999997667888888999******** PP

                 XXXXXX..XXXXXXXXXXXXXXXXXXXXX........XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX..XXXXXXXXXXXXXXXXXXXX. CS
         TTL 195 ekylee..vrkeeiweeiesiiiktilaae.......veasrlnvqrlkncfelyGvDilidenlkpwLlEvNasPdlksttkldaelkeeliddvlnl 284
                  ++l+    + +++w++i ++  kti++ +        +  ++  ++   cfel+G+Di++d +l p LlE+N+sP+++++++ d+ +k+ +i+ ++++
  KOO21403.1 208 MNTLRAegHDVDRLWKDIGEVCVKTIISVQphlehtyFTCRQRSDDPGFGCFELLGFDIMMDYKLRPSLLEINHSPSFTCDSPMDTAVKTAVIRGTMEM 306
                 ***999999*********************99887743444444456689********************************************99984 PP

                 X CS
         TTL 285 v 285
                 +
  KOO21403.1 307 I 307
                 3 PP

>> ATPgrasp_YheCD  YheC/D like ATP-grasp
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.7   0.0   0.00021      0.95      48      69 ..      80     101 ..      57     134 .. 0.82
   2 !   11.7   0.0   2.6e-05      0.11     201     247 ..     256     301 ..     198     309 .. 0.70

  Alignments for each domain:
  == domain 1  score: 8.7 bits;  conditional E-value: 0.00021
  ATPgrasp_YheCD  48 yksvylKpanGskGkgilriek 69 
                     +k+ ++Kp++G++Gkgi+  +k
      KOO21403.1  80 NKTFIVKPSAGCQGKGIYLTRK 101
                     56789*************9888 PP

  == domain 2  score: 11.7 bits;  conditional E-value: 2.6e-05
  ATPgrasp_YheCD 201 fgrlgElGlDlgidkegkvWllEvNskpgrsifkeagdkeaarksvk 247
                     fg +  lG+D+++d + +  llE+N  p+ +  + +++ +++ ++++
      KOO21403.1 256 FGCFELLGFDIMMDYKLRPSLLEINHSPSFTCDSPMDT-AVKTAVIR 301
                     3336669**********************988876644.56655555 PP

>> ATPgrasp_ST  Sugar-transfer associated ATP-grasp
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.1   0.0    0.0012       5.5      61      86 ..      80     106 ..      38     146 .. 0.76
   2 !   12.7   0.0   1.3e-05     0.056     241     277 ..     258     293 ..     233     302 .. 0.80

  Alignments for each domain:
  == domain 1  score: 6.1 bits;  conditional E-value: 0.0012
  ATPgrasp_ST  61 eg.vviKpakgsgGkGilviteredqd 86 
                  +  +++Kp  g  GkGi    + ++ d
   KOO21403.1  80 NKtFIVKPSAGCQGKGIYLTRKLDEID 106
                  335**************9886644433 PP

  == domain 2  score: 12.7 bits;  conditional E-value: 1.3e-05
  ATPgrasp_ST 241 glgylGwDivldeekgplllElNarpglaivqiange 277
                  +  +lG Di +d +  p llE+N+ p+ +  + + ++
   KOO21403.1 258 CFELLGFDIMMDYKLRPSLLEINHSPSFTC-DSPMDT 293
                  56789*********************9987.665555 PP

>> ATP-grasp_3  ATP-grasp domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.0   5.1e-06     0.023      11      71 ..      55     118 ..      50     123 .. 0.73
   2 ?   -2.2   0.0      0.85   3.8e+03     134     155 ..     258     280 ..     256     283 .. 0.83

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 5.1e-06
                  HTTT.S---....-EESS--......SSSEEEEESS-------B--SS--TTE.......EEEE--- CS
  ATP-grasp_3  11 LkeagvkvPtkleaeeleee......ekklvvKprdGaggesvrvveekeeaeaaieevelvqefie 71 
                  + +  + +P  +++ ++e +      +k+++vKp+ G+ g+++ + ++ +e +   + +++vq+++ 
   KOO21403.1  55 FPKT-FMLPADYTQLKAEWApgqnhgNKTFIVKPSAGCQGKGIYLTRKLDEID--PQDNSVVQRYLH 118
                  5555.6677444444444334467779********************996666..667779**9985 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 0.85
                  --EEEEEEEEESS..SEEEEEEE CS
  ATP-grasp_3 134 laGyvGvDlvlkd.eepyviEvN 155
                  ++ ++G D+++     p ++E+N
   KOO21403.1 258 CFELLGFDIMMDYkLRPSLLEIN 280
                  6668999**99876799*****9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (582 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       517  (0.028836); expected 358.6 (0.02)
Passed bias filter:                      352  (0.019633); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.58u 0.24s 00:00:00.82 Elapsed: 00:00:00.43
# Mc/sec: 4076.25
//
Query:       KOO21404.1  [L=165]
Description: hypothetical protein Ctob_005310 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (165 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       498  (0.0277762); expected 358.6 (0.02)
Passed bias filter:                      270  (0.0150594); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.22s 00:00:00.60 Elapsed: 00:00:00.37
# Mc/sec: 1331.10
//
Query:       KOO21405.1  [L=204]
Description: hypothetical protein Ctob_005313 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (204 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       356  (0.0198561); expected 358.6 (0.02)
Passed bias filter:                      284  (0.0158403); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.22s 00:00:00.59 Elapsed: 00:00:00.36
# Mc/sec: 1684.26
//
Query:       KOO21406.1  [L=350]
Description: hypothetical protein Ctob_005312 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    8.6e-18   64.5   9.4      2e-17   63.3   9.4    1.5  1  Mg_trans_NIPA    Magnesium transporter NIPA
  ------ inclusion threshold ------
       0.22   11.7   0.2       0.22   11.7   0.2    2.2  2  Phage_r1t_holin  Putative lactococcus lactis phage r1t holin
       0.59   10.5   5.6       0.22   11.9   2.1    2.0  2  DUF2781          Protein of unknown function (DUF2781)


Domain annotation for each model (and alignments):
>> Mg_trans_NIPA  Magnesium transporter NIPA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.3   9.4   3.3e-21     2e-17      50     290 ..      30     288 ..      23     293 .. 0.81

  Alignments for each domain:
  == domain 1  score: 63.3 bits;  conditional E-value: 3.3e-21
  Mg_trans_NIPA  50 vlWwaGlltmavG.eaanfaayafaPatLvtPLGalsvivsavlasllL...kekLkllgllGcllailGstvlvihaPkee..eieslkevadll 139
                    + W+ G++ + v   + +++a+++ P +L++P+  l++++s  +a   L    e +   ++ G +l + G tv  +  P+     +++l ++   +
     KOO21406.1  30 YRWLVGFVCLLVNaTVLDLIAFGLMPLSLISPFTGLTMVFSLCIAASGLvstAETISPEQQRGAFLVLFGLTVASVCGPHASgrGADTLPSILLHF 125
                    569999998887615679***********************9887654423368999999*******************985226899******** PP

  Mg_trans_NIPA 140 vdpaflvyvilvvvvvlvlilyve.....p.rkGktnil...vyitlcsllgsltvisvkalgiaikltlaGkaqlkyal...awilllvlvicvv 223
                    + p+flv+    v++v  l+ +++     p r  +   +         s+ gsl+ + +k ++ia++++ +Gk ql   l   + + l+ lv+c  
     KOO21406.1 126 MAPTFLVFLSASVAIVGGLLWVLHassaaPyRPAQSSWMrtgFSAYAASVCGSLSFVFIKVISIALHEAASGKRQLVALLhpaVVVSLIGLVVCAP 221
                    ********988887775555444411122223344433311134557899************************9876551105555667889999 PP

  Mg_trans_NIPA 224 lqinyLnkaldifntsivtPvyyvlfttlvivasailfkefleasvddvlgelsGfllvllgvfllh 290
                    lq++ L+  l    ++  +Pvy  l+t l   a+ i+f ef ++s ++ l++l+G l++l g+ ll 
     KOO21406.1 222 LQLHLLDTTLAASPVAYAVPVYQALLTLLSTGAGGIFFDEFRHTSGLSNLAYLVGALTSLGGLALLG 288
                    **************************************************************99985 PP

>> Phage_r1t_holin  Putative lactococcus lactis phage r1t holin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   0.1         2   1.2e+04      40      54 ..     136     150 ..     134     165 .. 0.58
   2 ?   11.7   0.2   3.7e-05      0.22      18      60 ..     244     286 ..     239     298 .. 0.90

  Alignments for each domain:
  == domain 1  score: -3.4 bits;  conditional E-value: 2
  Phage_r1t_holin  40 asvaalaAvvSvltS 54 
                      asva +  ++ vl +
       KOO21406.1 136 ASVAIVGGLLWVLHA 150
                      566666666666553 PP

  == domain 2  score: 11.7 bits;  conditional E-value: 3.7e-05
  Phage_r1t_holin  18 qallgllgagatglldvdwaaaasvaalaAvvSvltSivsaav 60 
                      qall ll++ga g++  +  ++++++ la +v +ltS+ + a+
       KOO21406.1 244 QALLTLLSTGAGGIFFDEFRHTSGLSNLAYLVGALTSLGGLAL 286
                      9*************************************99775 PP

>> DUF2781  Protein of unknown function (DUF2781)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.1      0.47   2.8e+03      98      98 ..      67      67 ..      28     104 .. 0.51
   2 ?   11.9   2.1   3.6e-05      0.22      59     144 ..     125     219 ..     116     221 .. 0.75

  Alignments for each domain:
  == domain 1  score: -1.4 bits;  conditional E-value: 0.47
     DUF2781 98 a 98
                +
  KOO21406.1 67 M 67
                1 PP

  == domain 2  score: 11.9 bits;  conditional E-value: 3.6e-05
     DUF2781  59 fvllelffqlPlffiavyaLl.....kk.......ekpwlrllllvYgvhaatttlaciaellsegeavasesekqklkllalylpylliPlllavdm 144
                 f++  +++ l +++++v +Ll     +        +++w+r+ + +Y+++++ ++  ++++++s      +e+   k +l+al  p ++++l+ +v +
  KOO21406.1 125 FMAPTFLVFLSASVAIVGGLLwvlhaSSaapyrpaQSSWMRTGFSAYAASVCGSLSFVFIKVISIAL---HEAASGKRQLVALLHPAVVVSLIGLVVC 219
                 445555556666666666666665551156666778********************99999988544...347777899***********99988765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (350 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       469  (0.0261587); expected 358.6 (0.02)
Passed bias filter:                      198  (0.0110436); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.45u 0.20s 00:00:00.65 Elapsed: 00:00:00.36
# Mc/sec: 2928.94
//
Query:       KOO21407.1  [L=155]
Description: vrr-nuc domain-containing protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.4e-05   25.1   0.0    1.9e-05   24.7   0.0    1.3  1  VRR_NUC   VRR-NUC domain


Domain annotation for each model (and alignments):
>> VRR_NUC  VRR-NUC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.7   0.0   1.1e-09   1.9e-05      41     106 ..      68     132 ..      25     134 .. 0.82

  Alignments for each domain:
  == domain 1  score: 24.7 bits;  conditional E-value: 1.1e-09
                 HHHHHHHCHHHHSSTS-SEEEEETTTTE..EEEEEEE-TT----HHHHHHHHHHHHTT-EEEEEEE CS
     VRR_NUC  41 lfralledyrglrsGvPDLilwieeqkryvflliEvKgpgdrlsdnQrkwldelarsgvrvevcrv 106
                 +++  + + rg+r G+ DL+++    +   +l++E+K  g+ l ++Q +wl++ + +g r ev+r+
  KOO21407.1  68 FMKG-AHKARGCRPGRADLLVLEAGADGTHGLAVELKVGGNGLLHSQVAWLARARLKGWRTEVVRS 132
                 3333.6899***********9988888789*********************************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (155 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       353  (0.0196888); expected 358.6 (0.02)
Passed bias filter:                      312  (0.017402); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.24s 00:00:00.64 Elapsed: 00:00:00.42
# Mc/sec: 1105.30
//
Query:       KOO21408.1  [L=345]
Description: hypothetical protein Ctob_000366, partial [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.6e-05   23.0   0.2    6.1e-05   22.3   0.2    1.4  1  EF-hand_5      EF hand
    5.2e-05   22.5   1.3      7e-05   22.1   0.4    1.6  2  EF-hand_1      EF hand
    0.00048   19.8   1.5    0.00066   19.4   0.6    1.6  2  EF-hand_6      EF-hand domain
     0.0019   18.0   0.2     0.0032   17.3   0.2    1.3  1  EF-hand_8      EF-hand domain pair
  ------ inclusion threshold ------
      0.014   15.8   0.0      0.023   15.2   0.0    1.3  1  EF-hand_7      EF-hand domain pair


Domain annotation for each model (and alignments):
>> EF-hand_5  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.3   0.2   1.7e-08   6.1e-05       1      23 [.      62      84 ..      62      87 .. 0.85

  Alignments for each domain:
  == domain 1  score: 22.3 bits;  conditional E-value: 1.7e-08
                HHHHHHHH-SS-SSCE-HHHHHH CS
   EF-hand_5  1 lkdtFqaiDlNgDGkIskeELkt 23
                l+ tF+ +D++g+G+I+  EL +
  KOO21408.1 62 LERTFNFFDVDGSGHIDYKELDR 84
                5679*****************44 PP

>> EF-hand_1  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.0       1.1   3.9e+03      18      28 ..      41      51 ..      41      52 .. 0.77
   2 !   22.1   0.4     2e-08     7e-05       1      22 [.      61      82 ..      61      87 .. 0.91

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 1.1
                EHHHHHHHHHH CS
   EF-hand_1 18 dfeEfkellkk 28
                +++Ef +++ k
  KOO21408.1 41 TRDEFFDAIYK 51
                57999998876 PP

  == domain 2  score: 22.1 bits;  conditional E-value: 2e-08
                HHHHHHHHHTTTSSSEEEHHHH CS
   EF-hand_1  1 elkeiFrefDkDgdGkIdfeEf 22
                +l++ F+ fD+Dg+G+Id++E+
  KOO21408.1 61 DLERTFNFFDVDGSGHIDYKEL 82
                58999****************9 PP

>> EF-hand_6  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.0       2.6   9.2e+03      18      27 ..      41      50 ..      41      53 .. 0.66
   2 !   19.4   0.6   1.8e-07   0.00066       2      23 ..      62      84 ..      61      89 .. 0.84

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 2.6
   EF-hand_6 18 daeElrkalr 27
                +++E+ +a+ 
  KOO21408.1 41 TRDEFFDAIY 50
                6788877765 PP

  == domain 2  score: 19.4 bits;  conditional E-value: 1.8e-07
   EF-hand_6  2 lreaFklfDkdgdGkidaeEl.r 23
                l++ F+ fD+dg+G+id++El r
  KOO21408.1 62 LERTFNFFDVDGSGHIDYKELdR 84
                7899****************944 PP

>> EF-hand_8  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   0.2   8.9e-07    0.0032       6      47 ..      41      81 ..      41      86 .. 0.90

  Alignments for each domain:
  == domain 1  score: 17.3 bits;  conditional E-value: 8.9e-07
   EF-hand_8  6 treelrril.rilglkkglseeevdilfrefDtdgdGkisfeE 47
                tr+e+ +++ ++ g    +se +++  f+ fD dg+G+i+++E
  KOO21408.1 41 TRDEFFDAIyKL-GVTY-VSEADLERTFNFFDVDGSGHIDYKE 81
                89*******665.6663.***********************99 PP

>> EF-hand_7  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.2   0.0   6.3e-06     0.023       2      26 ..      60      84 ..      42     106 .. 0.83

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 6.3e-06
   EF-hand_7  2 eklkeaFkelDtdgdgyldkeellr 26
                 +l++ F+ +D+dg+g++d+ el r
  KOO21408.1 60 ADLERTFNFFDVDGSGHIDYKELDR 84
                4677788888888888888888776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (345 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       389  (0.0216967); expected 358.6 (0.02)
Passed bias filter:                      281  (0.0156729); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.45u 0.24s 00:00:00.69 Elapsed: 00:00:00.41
# Mc/sec: 2511.49
//
Query:       KOO21409.1  [L=953]
Description: tpr repeat-containing protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.7e-82  268.7  38.7    3.7e-12   45.7   0.6    9.7  9  TPR_10     Tetratricopeptide repeat
    1.4e-72  240.0  46.4    7.4e-17   61.4   4.2    6.2  7  TPR_12     Tetratricopeptide repeat
    1.3e-28   97.6  11.5     0.0015   18.3   0.0    8.6  8  TPR_1      Tetratricopeptide repeat
    4.6e-26   88.8   8.3       0.01   16.0   0.0    9.2  9  TPR_8      Tetratricopeptide repeat
    5.7e-24   85.1  20.3    3.6e-12   46.3   7.1    3.5  3  TPR_MalT   MalT-like TPR region
    5.5e-23   79.2  19.5     0.0037   17.2   0.5    9.5  9  TPR_2      Tetratricopeptide repeat
    4.2e-16   57.8  38.0      0.099   13.3   0.1   11.7 10  TPR_4      Tetratricopeptide repeat
    2.1e-13   49.3  36.4      0.045   13.8   0.0    9.3  8  TPR_7      Tetratricopeptide repeat
    2.4e-13   49.4   8.1          2    9.0   0.0    8.6  8  TPR_17     Tetratricopeptide repeat
    2.8e-10   40.7  46.9    6.7e-07   29.8   3.6    8.5  6  TPR_16     Tetratricopeptide repeat
    2.7e-06   27.8  40.7    0.00061   20.2   2.6    6.7  7  TPR_19     Tetratricopeptide repeat
    5.9e-06   25.9  11.9        0.1   12.3   0.3    7.2  8  TPR_11     TPR repeat
    6.5e-06   26.0   0.0         39    4.4   0.0    6.0  6  TPR_3      Tetratricopeptide repeat
  ------ inclusion threshold ------
      0.012   15.9   0.5      0.082   13.3   0.2    2.4  2  Prok-TraM  Prokaryotic Transcriptional repressor TraM
      0.015   15.5  17.3         11    6.3   0.0    7.1  7  Osmo_CC    Osmosensory transporter coiled coil
      0.046   14.5  50.8        3.3    8.8   0.1   10.0  8  TPR_14     Tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> TPR_10  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.8   0.5   7.9e-11   8.9e-08       3      42 .]     558     597 ..     556     597 .. 0.95
   2 !   44.2   0.5     1e-14   1.1e-11       1      42 []     598     639 ..     598     639 .. 0.98
   3 !   28.9   0.0   6.5e-10   7.3e-07       1      42 []     640     681 ..     640     681 .. 0.95
   4 !   35.9   0.0   3.9e-12   4.4e-09       4      42 .]     685     723 ..     682     723 .. 0.97
   5 !   45.7   0.6   3.3e-15   3.7e-12       2      41 ..     725     764 ..     724     765 .. 0.97
   6 !   35.5   0.4   5.4e-12     6e-09       1      42 []     766     807 ..     766     807 .. 0.97
   7 !   39.0   0.7   4.1e-13   4.6e-10       1      38 [.     808     845 ..     808     848 .. 0.94
   8 !   16.3   0.0   5.8e-06    0.0065       1      40 [.     850     889 ..     850     891 .. 0.91
   9 !   13.7   0.5   3.8e-05     0.043       2      39 ..     893     931 ..     892     931 .. 0.96

  Alignments for each domain:
  == domain 1  score: 31.8 bits;  conditional E-value: 7.9e-11
      TPR_10   3 sslnNLanalrqrgrydeAealleealairrrllGpdHPd 42 
                 + ++ L+++l+++g++ eA  +l+eal++rr++lG+ HPd
  KOO21409.1 558 TLQTQLGRLLQNLGKHLEAAPMLREALEARRATLGNRHPD 597
                 56899**********************************9 PP

  == domain 2  score: 44.2 bits;  conditional E-value: 1e-14
      TPR_10   1 tAsslnNLanalrqrgrydeAealleealairrrllGpdHPd 42 
                 t+ s+nNL+++l+ +g++deA all+eal+irr++lG++H+d
  KOO21409.1 598 TLVSMNNLGRLLHIMGKLDEAGALLREALRIRRATLGDEHRD 639
                 789*************************************98 PP

  == domain 3  score: 28.9 bits;  conditional E-value: 6.5e-10
      TPR_10   1 tAsslnNLanalrqrgrydeAealleealairrrllGpdHPd 42 
                 t+ s +NL+++l ++g++ eAe l +e+l++rr+ lG+ H d
  KOO21409.1 640 TLDSVTNLGMLLKDQGKLPEAEVLWKEVLEVRRAQLGDRHTD 681
                 678889**********************************87 PP

  == domain 4  score: 35.9 bits;  conditional E-value: 3.9e-12
      TPR_10   4 slnNLanalrqrgrydeAealleealairrrllGpdHPd 42 
                 s nNL+ +l+++g++deAe ll+ al++rr++l   HPd
  KOO21409.1 685 SINNLGLLLQKQGKLDEAEPLLRSALEARRATLPYRHPD 723
                 78************************************8 PP

  == domain 5  score: 45.7 bits;  conditional E-value: 3.3e-15
      TPR_10   2 AsslnNLanalrqrgrydeAealleealairrrllGpdHP 41 
                 ++s+nNL+++l+++gr+deA  l++eal+++r++lG+ HP
  KOO21409.1 725 LASMNNLGRLLYDQGRLDEAGVLYREALEAQRATLGDQHP 764
                 68*************************************9 PP

  == domain 6  score: 35.5 bits;  conditional E-value: 5.4e-12
      TPR_10   1 tAsslnNLanalrqrgrydeAealleealairrrllGpdHPd 42 
                 t+ s +NL+ +l+++g++deA  l++eal+ r ++lG+ HP+
  KOO21409.1 766 TLVSISNLGLLLQAQGQLDEAALLHREALEGRVATLGDRHPH 807
                 7899*************************************6 PP

  == domain 7  score: 39.0 bits;  conditional E-value: 4.1e-13
      TPR_10   1 tAsslnNLanalrqrgrydeAealleealairrrllGp 38 
                 t++  nNL+ +l+++g++deAe ll+eal++rr++lG+
  KOO21409.1 808 TLTFINNLGLLLQDQGKLDEAELLLREALEARREILGD 845
                 78889********************************6 PP

  == domain 8  score: 16.3 bits;  conditional E-value: 5.8e-06
      TPR_10   1 tAsslnNLanalrqrgrydeAealleealairrrllGpdH 40 
                 t+ s +NLa++l++ g++deA  l+ ea + + ++l + H
  KOO21409.1 850 TLISISNLARLLQDKGQLDEADPLMSEAFDGCAATLAEGH 889
                 67799***********************999999998888 PP

  == domain 9  score: 13.7 bits;  conditional E-value: 3.8e-05
      TPR_10   2 AsslnNLanalrqrgrydeAeal.leealairrrllGpd 39 
                 ++s+  La + r++gr + A+al   ++l++ r++lGp+
  KOO21409.1 893 LRSQAWLADVRRAQGRIESARALvDARVLSTARAALGPN 931
                 78999********************************97 PP

>> TPR_12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.8   2.0     1e-19   1.1e-16       3      76 ..     557     630 ..     555     631 .. 0.96
   2 !   36.7   0.1   3.4e-12   3.9e-09      13      65 ..     609     661 ..     608     662 .. 0.97
   3 !   52.5   0.1     4e-17   4.5e-14       7      76 ..     645     714 ..     639     715 .. 0.95
   4 !   61.4   4.2   6.6e-20   7.4e-17       2      74 ..     724     796 ..     723     797 .. 0.95
   5 !   35.0   1.5   1.2e-11   1.3e-08      25      77 .]     789     841 ..     789     841 .. 0.97
   6 !   47.2   1.3   1.8e-15     2e-12       6      73 ..     812     879 ..     808     883 .. 0.93
   7 !   25.1   0.7   1.4e-08   1.6e-05       3      67 ..     851     915 ..     847     918 .. 0.94

  Alignments for each domain:
  == domain 1  score: 60.8 bits;  conditional E-value: 1e-19
      TPR_12   3 atalnnlaavlrrlgrydeAlellekaleiarrllGpdhpltattlrnLgrlyralgryeeAlelleealaiae 76 
                 +t++++l+ +l+ lg++ eA  +l++ale++r++lG  hp+t+ +++nLgrl++ +g+++eA +ll+eal+i++
  KOO21409.1 557 STLQTQLGRLLQNLGKHLEAAPMLREALEARRATLGNRHPDTLVSMNNLGRLLHIMGKLDEAGALLREALRIRR 630
                 678889******************************************************************98 PP

  == domain 2  score: 36.7 bits;  conditional E-value: 3.4e-12
      TPR_12  13 lrrlgrydeAlellekaleiarrllGpdhpltattlrnLgrlyralgryeeAl 65 
                 l+ +g++deA +ll++al+i+r++lG++h +t+ +  nLg+l+  +g++ eA+
  KOO21409.1 609 LHIMGKLDEAGALLREALRIRRATLGDEHRDTLDSVTNLGMLLKDQGKLPEAE 661
                 6789************************************************7 PP

  == domain 3  score: 52.5 bits;  conditional E-value: 4e-17
      TPR_12   7 nnlaavlrrlgrydeAlellekaleiarrllGpdhpltattlrnLgrlyralgryeeAlelleealaiae 76 
                 +nl+++l  +g++ eA+ l +++le++r+ lG+ h +t  + +nLg l++++g+++eA+ ll+ al++++
  KOO21409.1 645 TNLGMLLKDQGKLPEAEVLWKEVLEVRRAQLGDRHTDTFKSINNLGLLLQKQGKLDEAEPLLRSALEARR 714
                 39*****************************************************************998 PP

  == domain 4  score: 61.4 bits;  conditional E-value: 6.6e-20
      TPR_12   2 vatalnnlaavlrrlgrydeAlellekaleiarrllGpdhpltattlrnLgrlyralgryeeAlelleealai 74 
                 +++++nnl+ +l+ +gr+deA  l+++ale++r++lG++hp t+ +  nLg l++a+g+++eA  l++eal+ 
  KOO21409.1 724 MLASMNNLGRLLYDQGRLDEAGVLYREALEAQRATLGDQHPSTLVSISNLGLLLQAQGQLDEAALLHREALEG 796
                 567778*****************************************************************95 PP

  == domain 5  score: 35.0 bits;  conditional E-value: 1.2e-11
      TPR_12  25 llekaleiarrllGpdhpltattlrnLgrlyralgryeeAlelleealaiaek 77 
                 l+++ale + ++lG+ hp t+t  +nLg l++ +g+++eA+ ll+eal+++++
  KOO21409.1 789 LHREALEGRVATLGDRHPHTLTFINNLGLLLQDQGKLDEAELLLREALEARRE 841
                 5899*********************************************9985 PP

  == domain 6  score: 47.2 bits;  conditional E-value: 1.8e-15
      TPR_12   6 lnnlaavlrrlgrydeAlellekaleiarrllGpdhpltattlrnLgrlyralgryeeAlelleeala 73 
                  nnl+++l+ +g++deA+ ll++ale++r++lG+  ++t+++  nL+rl++  g+++eA  l  ea +
  KOO21409.1 812 INNLGLLLQDQGKLDEAELLLREALEARREILGDRDANTLISISNLARLLQDKGQLDEADPLMSEAFD 879
                 579********************************************************999988876 PP

  == domain 7  score: 25.1 bits;  conditional E-value: 1.4e-08
      TPR_12   3 atalnnlaavlrrlgrydeAlellekaleiarrllGpdhpltattlrnLgrlyralgryeeAlel 67 
                 +++ +nla +l+  g++deA  l  +a + + ++l + h   ++++  L+++ ra+gr e A++l
  KOO21409.1 851 LISISNLARLLQDKGQLDEADPLMSEAFDGCAATLAEGHRTRLRSQAWLADVRRAQGRIESARAL 915
                 55667*********************************************************986 PP

>> TPR_1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.0   0.0    0.0099        11       6      29 ..     562     585 ..     559     588 .. 0.93
   2 !   12.2   0.0   0.00011      0.13       5      31 ..     603     629 ..     600     630 .. 0.93
   3 !   12.7   0.0   7.9e-05     0.089       6      30 ..     646     670 ..     643     672 .. 0.94
   4 !   18.3   0.0   1.3e-06    0.0015       4      29 ..     686     711 ..     683     714 .. 0.92
   5 !   16.6   0.2   4.6e-06    0.0051       5      29 ..     729     753 ..     726     756 .. 0.93
   6 !   11.8   0.1   0.00015      0.17       5      29 ..     771     795 ..     769     795 .. 0.94
   7 !   16.5   0.3   4.7e-06    0.0053       5      29 ..     813     837 ..     811     841 .. 0.94
   8 ?    1.8   0.0      0.22   2.5e+02       5      20 ..     855     870 ..     853     871 .. 0.94

  Alignments for each domain:
  == domain 1  score: 6.0 bits;  conditional E-value: 0.0099
                 HHHHHHHHTT-HHHHHHHHHHHHH CS
       TPR_1   6 nlGnayfklgkydeAleyyekALe 29 
                 +lG ++++lgk+ eA    ++ALe
  KOO21409.1 562 QLGRLLQNLGKHLEAAPMLREALE 585
                 79*********************9 PP

  == domain 2  score: 12.2 bits;  conditional E-value: 0.00011
                 HHHHHHHHHTT-HHHHHHHHHHHHHHS CS
       TPR_1   5 ynlGnayfklgkydeAleyyekALeln 31 
                 +nlG +++ +gk+deA +  ++AL+++
  KOO21409.1 603 NNLGRLLHIMGKLDEAGALLREALRIR 629
                 9***********************985 PP

  == domain 3  score: 12.7 bits;  conditional E-value: 7.9e-05
                 HHHHHHHHTT-HHHHHHHHHHHHHH CS
       TPR_1   6 nlGnayfklgkydeAleyyekALel 30 
                 nlG+++  +gk+ eA+   +++Le+
  KOO21409.1 646 NLGMLLKDQGKLPEAEVLWKEVLEV 670
                 9**********************98 PP

  == domain 4  score: 18.3 bits;  conditional E-value: 1.3e-06
                 HHHHHHHHHHTT-HHHHHHHHHHHHH CS
       TPR_1   4 lynlGnayfklgkydeAleyyekALe 29 
                  +nlG++++k+gk+deA+   + ALe
  KOO21409.1 686 INNLGLLLQKQGKLDEAEPLLRSALE 711
                 59**********************98 PP

  == domain 5  score: 16.6 bits;  conditional E-value: 4.6e-06
                 HHHHHHHHHTT-HHHHHHHHHHHHH CS
       TPR_1   5 ynlGnayfklgkydeAleyyekALe 29 
                 +nlG +++ +g++deA   y++ALe
  KOO21409.1 729 NNLGRLLYDQGRLDEAGVLYREALE 753
                 9***********************9 PP

  == domain 6  score: 11.8 bits;  conditional E-value: 0.00015
                 HHHHHHHHHTT-HHHHHHHHHHHHH CS
       TPR_1   5 ynlGnayfklgkydeAleyyekALe 29 
                  nlG++++ +g++deA    ++ALe
  KOO21409.1 771 SNLGLLLQAQGQLDEAALLHREALE 795
                 69***************99999997 PP

  == domain 7  score: 16.5 bits;  conditional E-value: 4.7e-06
                 HHHHHHHHHTT-HHHHHHHHHHHHH CS
       TPR_1   5 ynlGnayfklgkydeAleyyekALe 29 
                 +nlG++++ +gk+deA+   ++ALe
  KOO21409.1 813 NNLGLLLQDQGKLDEAELLLREALE 837
                 8***********************9 PP

  == domain 8  score: 1.8 bits;  conditional E-value: 0.22
                 HHHHHHHHHTT-HHHH CS
       TPR_1   5 ynlGnayfklgkydeA 20 
                  nl+ +++ +g++deA
  KOO21409.1 855 SNLARLLQDKGQLDEA 870
                 59*************9 PP

>> TPR_8  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.2   0.0   0.00015      0.16       5      33 ..     561     589 ..     557     590 .. 0.91
   2 !   16.0   0.0   9.3e-06      0.01       4      33 ..     602     631 ..     600     632 .. 0.93
   3 ?    2.2   0.0      0.24   2.7e+02       5      30 ..     645     670 ..     641     674 .. 0.77
   4 !   14.6   0.0   2.5e-05     0.028       3      33 ..     685     715 ..     683     716 .. 0.91
   5 !   15.5   0.1   1.3e-05     0.014       3      33 ..     727     757 ..     725     758 .. 0.92
   6 ?    2.8   0.1      0.15   1.7e+02       6      21 ..     772     787 ..     769     795 .. 0.85
   7 !   14.3   0.1   3.2e-05     0.036       5      32 ..     813     840 ..     809     842 .. 0.92
   8 ?    5.8   0.0     0.017        19       6      27 ..     856     877 ..     853     879 .. 0.85
   9 ?   -0.5   0.0       1.7   1.9e+03       2      22 ..     894     914 ..     893     915 .. 0.87

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 0.00015
                 HHHHHHHHHTT-HHHHHHHHHHHHHHHHH CS
       TPR_8   5 ynlgsiylklgdyeeAkeyyekaleldpd 33 
                  +lg+++++lg++ eA   +++ale++++
  KOO21409.1 561 TQLGRLLQNLGKHLEAAPMLREALEARRA 589
                 68***********************9875 PP

  == domain 2  score: 16.0 bits;  conditional E-value: 9.3e-06
                 HHHHHHHHHHTT-HHHHHHHHHHHHHHHHH CS
       TPR_8   4 yynlgsiylklgdyeeAkeyyekaleldpd 33 
                 ++nlg++++ +g+++eA + +++al+++++
  KOO21409.1 602 MNNLGRLLHIMGKLDEAGALLREALRIRRA 631
                 79************************9975 PP

  == domain 3  score: 2.2 bits;  conditional E-value: 0.24
                 HHHHHHHHHTT-HHHHHHHHHHHHHH CS
       TPR_8   5 ynlgsiylklgdyeeAkeyyekalel 30 
                  nlg++++++g++ eA+   +++le 
  KOO21409.1 645 TNLGMLLKDQGKLPEAEVLWKEVLEV 670
                 79**********99888666666665 PP

  == domain 4  score: 14.6 bits;  conditional E-value: 2.5e-05
                 HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH CS
       TPR_8   3 ayynlgsiylklgdyeeAkeyyekaleldpd 33 
                 + +nlg++++k+g+++eA+  ++ ale++++
  KOO21409.1 685 SINNLGLLLQKQGKLDEAEPLLRSALEARRA 715
                 679************************9875 PP

  == domain 5  score: 15.5 bits;  conditional E-value: 1.3e-05
                 HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH CS
       TPR_8   3 ayynlgsiylklgdyeeAkeyyekaleldpd 33 
                 +++nlg+++ ++g+++eA   y++ale++++
  KOO21409.1 727 SMNNLGRLLYDQGRLDEAGVLYREALEAQRA 757
                 689************************9875 PP

  == domain 6  score: 2.8 bits;  conditional E-value: 0.15
                 HHHHHHHHTT-HHHHH CS
       TPR_8   6 nlgsiylklgdyeeAk 21 
                 nlg++++ +g+++eA 
  KOO21409.1 772 NLGLLLQAQGQLDEAA 787
                 8*************96 PP

  == domain 7  score: 14.3 bits;  conditional E-value: 3.2e-05
                 HHHHHHHHHTT-HHHHHHHHHHHHHHHH CS
       TPR_8   5 ynlgsiylklgdyeeAkeyyekaleldp 32 
                 +nlg++++++g+++eA+  +++ale+++
  KOO21409.1 813 NNLGLLLQDQGKLDEAELLLREALEARR 840
                 89***********************986 PP

  == domain 8  score: 5.8 bits;  conditional E-value: 0.017
                 HHHHHHHHTT-HHHHHHHHHHH CS
       TPR_8   6 nlgsiylklgdyeeAkeyyeka 27 
                 nl+++++++g+++eA   + +a
  KOO21409.1 856 NLARLLQDKGQLDEADPLMSEA 877
                 89*************8776665 PP

  == domain 9  score: -0.5 bits;  conditional E-value: 1.7
                 CHHHHHHHHHHHTT-HHHHHH CS
       TPR_8   2 eayynlgsiylklgdyeeAke 22 
                 ++  +l+++ + +g++e+A +
  KOO21409.1 894 RSQAWLADVRRAQGRIESARA 914
                 677899************976 PP

>> TPR_MalT  MalT-like TPR region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.8   2.7   1.5e-06    0.0017      26     155 ..     501     632 ..     494     645 .. 0.77
   2 !   28.2   0.2   1.1e-09   1.2e-06      49     154 ..     650     757 ..     643     763 .. 0.86
   3 !   46.3   7.1   3.3e-15   3.6e-12      31     185 ..     758     917 ..     748     948 .. 0.86

  Alignments for each domain:
  == domain 1  score: 17.8 bits;  conditional E-value: 1.5e-06
    TPR_MalT  26 qALallpeddllariaatavlGeasllqGdleaAlqalqeae.kla.rqadslhv.allallqqaeilvaqGrLheAletyeqalqlateqglqqlplv 121
                 + ++ ++++d+    +a++  G++  ++  ++a+l+ + +ae ++a  ++ s ++ + +  +q++ +l+  G+  eA+ + ++al+  + + + + p  
  KOO21409.1 501 AQITKIEDRDYILAEVALL-KGGIGAVTATVCASLREWLAAEgRAAlARIPSEKRaTSTLQTQLGRLLQNLGKHLEAAPMLREALEARRATLGNRHPDT 598
                 5566677777777777744.4778888888999999999998544413333333313334449999********************9999*9*999999 PP

    TPR_MalT 122 gfllvlladllyEwndLeeAeqhlqeGielleql 155
                  + +  l++ll+ +++L+eA   l+e++++ +  
  KOO21409.1 599 LVSMNNLGRLLHIMGKLDEAGALLREALRIRRAT 632
                 9999999******************999998764 PP

  == domain 2  score: 28.2 bits;  conditional E-value: 1.1e-09
    TPR_MalT  49 asllqGdleaAlqalqeaekl..arqadslhvallallqqaeilvaqGrLheAletyeqalqlateqglqqlplvgfllvlladllyEwndLeeAeqhl 145
                     qG+l++A+  ++e+ ++  a+  d+ + +  ++  ++ +l++qG+L+eA+ + + al+  + +   + p +   +  l++lly++++L+eA    
  KOO21409.1 650 LLKDQGKLPEAEVLWKEVLEVrrAQLGDRHTDTFKSINNLGLLLQKQGKLDEAEPLLRSALEARRATLPYRHPDMLASMNNLGRLLYDQGRLDEAGVLY 748
                 555699**********9997643666677777******************************999999999999999999***************9999 PP

    TPR_MalT 146 qeGielleq 154
                 +e++e  + 
  KOO21409.1 749 REALEAQRA 757
                 999987765 PP

  == domain 3  score: 46.3 bits;  conditional E-value: 3.3e-15
    TPR_MalT  31 lpeddllariaatavlGeasllqGdleaAlqalqeae..kla.rqadslhvallallqqaeilvaqGrLheAletyeqalqlateqglqqlplvgfllv 126
                 +  d++++ ++  ++lG   + qG+l++A   ++ea   ++a ++  ++h +l+ +  ++ +l+ qG+L+eA+ + ++al+  +e  + +     +   
  KOO21409.1 758 TLGDQHPSTLVSISNLGLLLQAQGQLDEAALLHREALegRVAtLGDRHPH-TLTFINNLGLLLQDQGKLDEAELLLREALEARREILGDRDANTLISIS 855
                 5578999999999*********************9983446636666666.999999****************************************** PP

    TPR_MalT 127 lladllyEwndLeeAeqhlqeGie.lleql..epeaaldayvllarialaqGdleeAetlle 185
                  la+ll ++++L+eA     e+ + ++  l  + +++l++++ la+++ aqG++e A +l++
  KOO21409.1 856 NLARLLQDKGQLDEADPLMSEAFDgCAATLaeGHRTRLRSQAWLADVRRAQGRIESARALVD 917
                 *******************9998854444454678999*******************99987 PP

>> TPR_2  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.7   0.1    0.0081       9.1       6      29 ..     562     585 ..     558     588 .. 0.92
   2 !   11.5   0.1   0.00023      0.26       5      30 ..     603     628 ..     601     631 .. 0.93
   3 !    7.7   0.0    0.0039       4.3       6      29 ..     646     669 ..     644     672 .. 0.94
   4 !   13.3   0.1     6e-05     0.068       5      29 ..     687     711 ..     683     714 .. 0.91
   5 !   17.2   0.5   3.3e-06    0.0037       4      30 ..     728     754 ..     726     757 .. 0.92
   6 !    7.5   0.1    0.0045         5       5      28 ..     771     794 ..     769     795 .. 0.85
   7 !   14.8   0.2   2.1e-05     0.023       5      30 ..     813     838 ..     810     841 .. 0.93
   8 ?    3.5   0.0     0.082        91       5      27 ..     855     877 ..     853     879 .. 0.86
   9 ?    0.6   0.0       0.7   7.9e+02       6      22 ..     898     914 ..     894     917 .. 0.87

  Alignments for each domain:
  == domain 1  score: 6.7 bits;  conditional E-value: 0.0081
       TPR_2   6 nlGlayyklgdyeeAleafekAle 29 
                 +lG+++ +lg++ eA+  +++Ale
  KOO21409.1 562 QLGRLLQNLGKHLEAAPMLREALE 585
                 79*********************8 PP

  == domain 2  score: 11.5 bits;  conditional E-value: 0.00023
       TPR_2   5 ynlGlayyklgdyeeAleafekAlel 30 
                 +nlG+++  +g+++eA +++++Al++
  KOO21409.1 603 NNLGRLLHIMGKLDEAGALLREALRI 628
                 89**********************98 PP

  == domain 3  score: 7.7 bits;  conditional E-value: 0.0039
       TPR_2   6 nlGlayyklgdyeeAleafekAle 29 
                 nlG+++  +g++ eA+ +++++le
  KOO21409.1 646 NLGMLLKDQGKLPEAEVLWKEVLE 669
                 89********************98 PP

  == domain 4  score: 13.3 bits;  conditional E-value: 6e-05
       TPR_2   5 ynlGlayyklgdyeeAleafekAle 29 
                 +nlGl++ k+g+++eA+ +++ Ale
  KOO21409.1 687 NNLGLLLQKQGKLDEAEPLLRSALE 711
                 89*********************98 PP

  == domain 5  score: 17.2 bits;  conditional E-value: 3.3e-06
       TPR_2   4 lynlGlayyklgdyeeAleafekAlel 30 
                  +nlG+++y +g+++eA  ++++Ale 
  KOO21409.1 728 MNNLGRLLYDQGRLDEAGVLYREALEA 754
                 68***********************95 PP

  == domain 6  score: 7.5 bits;  conditional E-value: 0.0045
       TPR_2   5 ynlGlayyklgdyeeAleafekAl 28 
                  nlGl++ ++g+++eA+ + ++Al
  KOO21409.1 771 SNLGLLLQAQGQLDEAALLHREAL 794
                 59**************97766666 PP

  == domain 7  score: 14.8 bits;  conditional E-value: 2.1e-05
       TPR_2   5 ynlGlayyklgdyeeAleafekAlel 30 
                 +nlGl++  +g+++eA+ ++++Ale 
  KOO21409.1 813 NNLGLLLQDQGKLDEAELLLREALEA 838
                 79**********************95 PP

  == domain 8  score: 3.5 bits;  conditional E-value: 0.082
       TPR_2   5 ynlGlayyklgdyeeAleafekA 27 
                  nl++++  +g+++eA  ++ +A
  KOO21409.1 855 SNLARLLQDKGQLDEADPLMSEA 877
                 59**************7777666 PP

  == domain 9  score: 0.6 bits;  conditional E-value: 0.7
       TPR_2   6 nlGlayyklgdyeeAle 22 
                 +l+++ +++g+ e A++
  KOO21409.1 898 WLADVRRAQGRIESARA 914
                 7999***********97 PP

>> TPR_4  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.1       5.4     6e+03      10      21 ..     308     319 ..     304     319 .. 0.78
   2 ?    3.4   0.1      0.14   1.6e+02       5      26 .]     561     582 ..     558     582 .. 0.91
   3 !    9.5   0.0    0.0015       1.7       6      26 .]     604     624 ..     599     624 .. 0.91
   4 ?    5.8   0.0     0.024        27       6      24 ..     646     664 ..     643     666 .. 0.91
   5 !   10.0   0.0     0.001       1.1       6      25 ..     688     707 ..     687     708 .. 0.95
   6 !   13.3   0.1   8.8e-05     0.099       5      26 .]     729     750 ..     725     750 .. 0.87
   7 !    8.6   0.7    0.0029       3.3       6      21 ..     772     787 ..     771     787 .. 0.93
   8 !    7.8   0.2    0.0052       5.9       6      26 .]     814     834 ..     813     834 .. 0.90
   9 ?    6.1   0.0     0.019        22       5      22 ..     855     872 ..     855     876 .. 0.88
  10 !    9.9   3.1    0.0011       1.3       2      25 ..     894     917 ..     893     918 .. 0.92

  Alignments for each domain:
  == domain 1  score: -1.5 bits;  conditional E-value: 5.4
       TPR_4  10 allalGdldeAr 21 
                 ++ a+G+ ++A+
  KOO21409.1 308 TAEARGEVADAL 319
                 677999999996 PP

  == domain 2  score: 3.4 bits;  conditional E-value: 0.14
       TPR_4   5 laLArallalGdldeAraller 26 
                   L+r+l+ lG + eA+ +l++
  KOO21409.1 561 TQLGRLLQNLGKHLEAAPMLRE 582
                 679*****************97 PP

  == domain 3  score: 9.5 bits;  conditional E-value: 0.0015
       TPR_4   6 aLArallalGdldeAraller 26 
                 +L+r+l+  G ldeA all++
  KOO21409.1 604 NLGRLLHIMGKLDEAGALLRE 624
                 8******************97 PP

  == domain 4  score: 5.8 bits;  conditional E-value: 0.024
       TPR_4   6 aLArallalGdldeArall 24 
                 +L+++l ++G l+eA+ l+
  KOO21409.1 646 NLGMLLKDQGKLPEAEVLW 664
                 89**************987 PP

  == domain 5  score: 10.0 bits;  conditional E-value: 0.001
       TPR_4   6 aLArallalGdldeAralle 25 
                 +L+ +l+ +G ldeA+ ll+
  KOO21409.1 688 NLGLLLQKQGKLDEAEPLLR 707
                 79*****************9 PP

  == domain 6  score: 13.3 bits;  conditional E-value: 8.8e-05
       TPR_4   5 laLArallalGdldeAraller 26 
                  +L+r+l+++G+ldeA  l ++
  KOO21409.1 729 NNLGRLLYDQGRLDEAGVLYRE 750
                 58**************988875 PP

  == domain 7  score: 8.6 bits;  conditional E-value: 0.0029
       TPR_4   6 aLArallalGdldeAr 21 
                 +L+ +l+a+G+ldeA+
  KOO21409.1 772 NLGLLLQAQGQLDEAA 787
                 8**************6 PP

  == domain 8  score: 7.8 bits;  conditional E-value: 0.0052
       TPR_4   6 aLArallalGdldeAraller 26 
                 +L+ +l+++G ldeA+ ll++
  KOO21409.1 814 NLGLLLQDQGKLDEAELLLRE 834
                 79*************988875 PP

  == domain 9  score: 6.1 bits;  conditional E-value: 0.019
       TPR_4   5 laLArallalGdldeAra 22 
                 ++LAr+l++ G+ldeA  
  KOO21409.1 855 SNLARLLQDKGQLDEADP 872
                 59**************65 PP

  == domain 10  score: 9.9 bits;  conditional E-value: 0.0011
       TPR_4   2 rallaLArallalGdldeAralle 25 
                 r +++LA +  a+G+ + Aral++
  KOO21409.1 894 RSQAWLADVRRAQGRIESARALVD 917
                 7899*****************987 PP

>> TPR_7  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.2   0.2    0.0051       5.7       4      32 ..     562     590 ..     558     594 .. 0.86
   2 !    6.7   0.1    0.0072         8       2      33 ..     602     633 ..     601     636 .. 0.89
   3 ?    0.8   0.0      0.58   6.5e+02       4      34 ..     646     676 ..     643     678 .. 0.86
   4 !   13.8   0.0     4e-05     0.045       1      30 [.     685     714 ..     685     718 .. 0.89
   5 !    9.8   0.4   0.00073      0.82       2      27 ..     728     754 ..     727     762 .. 0.84
   6 !   13.3   0.4   5.9e-05     0.066       1      32 [.     769     800 ..     769     804 .. 0.88
   7 !   13.1   0.5   6.6e-05     0.074       3      33 ..     813     843 ..     811     846 .. 0.89
   8 ?    5.5   0.0     0.017        19       1      20 [.     853     872 ..     853     879 .. 0.88

  Alignments for each domain:
  == domain 1  score: 7.2 bits;  conditional E-value: 0.0051
       TPR_7   4 nLarlysrlGdyeeAielyeqsLaltkdp 32 
                 +L+rl ++lG++ eA+  ++++L+ +++ 
  KOO21409.1 562 QLGRLLQNLGKHLEAAPMLREALEARRAT 590
                 7********************99887765 PP

  == domain 2  score: 6.7 bits;  conditional E-value: 0.0072
       TPR_7   2 LlnLarlysrlGdyeeAielyeqsLaltkdpe 33 
                  +nL+rl + +G+ +eA  l++++L+++++ +
  KOO21409.1 602 MNNLGRLLHIMGKLDEAGALLREALRIRRATL 633
                 69*********************999998766 PP

  == domain 3  score: 0.8 bits;  conditional E-value: 0.58
       TPR_7   4 nLarlysrlGdyeeAielyeqsLaltkdped 34 
                 nL+ l  ++G+  eA+ l +++L++++++++
  KOO21409.1 646 NLGMLLKDQGKLPEAEVLWKEVLEVRRAQLG 676
                 99*************9999999988888765 PP

  == domain 4  score: 13.8 bits;  conditional E-value: 4e-05
       TPR_7   1 aLlnLarlysrlGdyeeAielyeqsLaltk 30 
                 +++nL+ l +++G+ +eA+ l++ +L+ ++
  KOO21409.1 685 SINNLGLLLQKQGKLDEAEPLLRSALEARR 714
                 689*********************887665 PP

  == domain 5  score: 9.8 bits;  conditional E-value: 0.00073
       TPR_7   2 LlnLarlysrlGdyeeAielyeqsL.a 27 
                  +nL+rl  ++G+ +eA  ly+++L a
  KOO21409.1 728 MNNLGRLLYDQGRLDEAGVLYREALeA 754
                 69*********************8833 PP

  == domain 6  score: 13.3 bits;  conditional E-value: 5.9e-05
       TPR_7   1 aLlnLarlysrlGdyeeAielyeqsLaltkdp 32 
                 +++nL+ l +++G+ +eA+ l++++L+ + + 
  KOO21409.1 769 SISNLGLLLQAQGQLDEAALLHREALEGRVAT 800
                 579*********************99988765 PP

  == domain 7  score: 13.1 bits;  conditional E-value: 6.6e-05
       TPR_7   3 lnLarlysrlGdyeeAielyeqsLaltkdpe 33 
                 +nL+ l +++G+ +eA+ l++++L+ +++ +
  KOO21409.1 813 NNLGLLLQDQGKLDEAELLLREALEARREIL 843
                 8*********************998887765 PP

  == domain 8  score: 5.5 bits;  conditional E-value: 0.017
       TPR_7   1 aLlnLarlysrlGdyeeAie 20 
                 +++nLarl ++ G+ +eA  
  KOO21409.1 853 SISNLARLLQDKGQLDEADP 872
                 579**************976 PP

>> TPR_17  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.3   0.1       1.1   1.2e+03      17      32 ..     561     576 ..     557     577 .. 0.84
   2 !    7.9   0.0    0.0039       4.3      13      32 ..     599     618 ..     593     620 .. 0.86
   3 ?    3.1   0.0      0.13   1.5e+02      15      33 ..     643     661 ..     641     661 .. 0.88
   4 !    8.6   0.0    0.0024       2.7      14      33 ..     684     703 ..     678     703 .. 0.90
   5 !    9.0   0.0    0.0018         2      15      32 ..     727     744 ..     720     745 .. 0.92
   6 ?    4.1   0.0     0.062        70      17      32 ..     771     786 ..     761     787 .. 0.88
   7 ?    5.8   0.0     0.018        20      17      33 ..     813     829 ..     810     829 .. 0.92
   8 ?    4.9   0.0     0.035        39      18      32 ..     856     870 ..     852     871 .. 0.91

  Alignments for each domain:
  == domain 1  score: 0.3 bits;  conditional E-value: 1.1
      TPR_17  17 nnLAelllknGdlmtA 32 
                 ++L++ll ++G++ +A
  KOO21409.1 561 TQLGRLLQNLGKHLEA 576
                 689********97665 PP

  == domain 2  score: 7.9 bits;  conditional E-value: 0.0039
      TPR_17  13 adaynnLAelllknGdlmtA 32 
                  +++nnL++ll+  G+l++A
  KOO21409.1 599 LVSMNNLGRLLHIMGKLDEA 618
                 579***************98 PP

  == domain 3  score: 3.1 bits;  conditional E-value: 0.13
      TPR_17  15 aynnLAelllknGdlmtAr 33 
                 + +nL+ ll+ +G+l +A+
  KOO21409.1 643 SVTNLGMLLKDQGKLPEAE 661
                 668***********99986 PP

  == domain 4  score: 8.6 bits;  conditional E-value: 0.0024
      TPR_17  14 daynnLAelllknGdlmtAr 33 
                 ++ nnL+ ll k+G+l++A+
  KOO21409.1 684 KSINNLGLLLQKQGKLDEAE 703
                 688***************96 PP

  == domain 5  score: 9.0 bits;  conditional E-value: 0.0018
      TPR_17  15 aynnLAelllknGdlmtA 32 
                 ++nnL++ll+ +G+l++A
  KOO21409.1 727 SMNNLGRLLYDQGRLDEA 744
                 89**************98 PP

  == domain 6  score: 4.1 bits;  conditional E-value: 0.062
      TPR_17  17 nnLAelllknGdlmtA 32 
                  nL+ ll  +G+l++A
  KOO21409.1 771 SNLGLLLQAQGQLDEA 786
                 69************98 PP

  == domain 7  score: 5.8 bits;  conditional E-value: 0.018
      TPR_17  17 nnLAelllknGdlmtAr 33 
                 nnL+ ll  +G+l++A+
  KOO21409.1 813 NNLGLLLQDQGKLDEAE 829
                 9**************96 PP

  == domain 8  score: 4.9 bits;  conditional E-value: 0.035
      TPR_17  18 nLAelllknGdlmtA 32 
                 nLA+ll  +G+l++A
  KOO21409.1 856 NLARLLQDKGQLDEA 870
                 9************98 PP

>> TPR_16  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.7   2.1e-05     0.024       2      63 ..     562     628 ..     561     632 .. 0.87
   2 ?    1.6   0.0      0.41   4.6e+02      38      55 ..     645     663 ..     629     673 .. 0.63
   3 !   29.8   3.6     6e-10   6.7e-07       2      63 ..     688     754 ..     687     758 .. 0.88
   4 ?    5.6   6.9     0.023        26       3      63 ..     773     838 ..     771     841 .. 0.64
   5 !    9.9   0.7     0.001       1.2       2      27 ..     814     839 ..     813     849 .. 0.84
   6 ?    4.9   4.4     0.038        42       3      59 ..     857     918 ..     855     925 .. 0.72

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 2.1e-05
      TPR_16   2 alaraalragdyddAaaaleaalkrdp.....ssPdaaeAllllgdaalrqgrlaeAaalyraalra 63 
                 +l+r++ ++g+  +Aa++l++al++++     ++Pd+  ++++lg+++   g l+eA al+r+alr 
  KOO21409.1 562 QLGRLLQNLGKHLEAAPMLREALEARRatlgnRHPDTLVSMNNLGRLLHIMGKLDEAGALLREALRI 628
                 689*********************997333334566999*************************975 PP

  == domain 2  score: 1.6 bits;  conditional E-value: 0.41
      TPR_16  38 lllgdaalrqgrlaeAa.a 55 
                  +lg ++  qg l+eA+  
  KOO21409.1 645 TNLGMLLKDQGKLPEAEvL 663
                 5566666666666666533 PP

  == domain 3  score: 29.8 bits;  conditional E-value: 6e-10
      TPR_16   2 alaraalragdyddAaaaleaalkrdp.....ssPdaaeAllllgdaalrqgrlaeAaalyraalra 63 
                 +l++++ ++g+ d+A+++l+ al++++     ++Pd  +++++lg++++ qgrl+eA  lyr+al+a
  KOO21409.1 688 NLGLLLQKQGKLDEAEPLLRSALEARRatlpyRHPDMLASMNNLGRLLYDQGRLDEAGVLYREALEA 754
                 6899********************984333337899****************************976 PP

  == domain 4  score: 5.6 bits;  conditional E-value: 0.023
      TPR_16   3 laraalragdyddAaaaleaalk.....rdpssPdaaeAllllgdaalrqgrlaeAaalyraalra 63 
                 l++++ ++g+ d+Aa + ++al+     ++ ++P +  + ++lg+++  qg l+eA+ l+r+al+a
  KOO21409.1 773 LGLLLQAQGQLDEAALLHREALEgrvatLGDRHPHTLTFINNLGLLLQDQGKLDEAELLLREALEA 838
                 677777777777776444444431111155566668888888888888888888888888888865 PP

  == domain 5  score: 9.9 bits;  conditional E-value: 0.001
      TPR_16   2 alaraalragdyddAaaaleaalkrd 27 
                 +l++++ ++g+ d+A+ +l++al+++
  KOO21409.1 814 NLGLLLQDQGKLDEAELLLREALEAR 839
                 58899999999999999999999887 PP

  == domain 6  score: 4.9 bits;  conditional E-value: 0.038
      TPR_16   3 laraalragdyddAaaaleaalkrdpssPd.....aaeAllllgdaalrqgrlaeAaalyra 59 
                 lar++ + g+ d+A ++  +a +  + + +     + +++ +l+d++ +qgr + A+al++a
  KOO21409.1 857 LARLLQDKGQLDEADPLMSEAFDGCAATLAeghrtRLRSQAWLADVRRAQGRIESARALVDA 918
                 56666666666666666666555553333355555789999****************99987 PP

>> TPR_19  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.0       4.1   4.6e+03      43      62 ..     541     560 ..     539     570 .. 0.77
   2 ?    6.3   0.7     0.013        14       5      53 ..     571     627 ..     566     632 .. 0.86
   3 !    7.4   0.1    0.0057       6.4       3      53 ..     611     669 ..     609     674 .. 0.86
   4 !   20.2   2.6   5.5e-07   0.00061       3      56 ..     695     756 ..     693     762 .. 0.93
   5 !   11.0   3.2   0.00041      0.45       3      56 ..     779     840 ..     777     854 .. 0.88
   6 !    8.5   4.2    0.0025       2.8       3      45 ..     821     871 ..     819     877 .. 0.77
   7 !   11.9   0.8   0.00022      0.24       3      54 ..     863     922 ..     861     928 .. 0.78

  Alignments for each domain:
  == domain 1  score: -1.8 bits;  conditional E-value: 4.1
      TPR_19  43 eAealLdalpeedpddarya 62 
                 e +a+L+++p e++ ++ ++
  KOO21409.1 541 EGRAALARIPSEKRATSTLQ 560
                 66899999999998866555 PP

  == domain 2  score: 6.3 bits;  conditional E-value: 0.013
      TPR_19   5 gdyaeAlalleqalqe........dpknaearllLAeallalgqldeAealLdalpe 53 
                 g++ eA+++l++al++         p+ +    +L ++l  +g ldeA alL ++++
  KOO21409.1 571 GKHLEAAPMLREALEArratlgnrHPDTLVSMNNLGRLLHIMGKLDEAGALLREALR 627
                 78889*********99888887777777777779*****************998876 PP

  == domain 3  score: 7.4 bits;  conditional E-value: 0.0057
      TPR_19   3 aegdyaeAlalleqal........qedpknaearllLAeallalgqldeAealLdalpe 53 
                  +g+++eA all++al        +e  + ++   +L  +l  +g l eAe l ++++e
  KOO21409.1 611 IMGKLDEAGALLREALrirratlgDEHRDTLDSVTNLGMLLKDQGKLPEAEVLWKEVLE 669
                 68*************97777776677899999999****************98777765 PP

  == domain 4  score: 20.2 bits;  conditional E-value: 5.5e-07
      TPR_19   3 aegdyaeAlalleqalqe........dpknaearllLAeallalgqldeAealLdalpeedp 56 
                 ++g+++eA +ll++al++         p++++   +L ++l+ +g+ldeA  l  +++e+++
  KOO21409.1 695 KQGKLDEAEPLLRSALEArratlpyrHPDMLASMNNLGRLLYDQGRLDEAGVLYREALEAQR 756
                 79**************99999*****************************999998888775 PP

  == domain 5  score: 11.0 bits;  conditional E-value: 0.00041
      TPR_19   3 aegdyaeAlalleqalqe........dpknaearllLAeallalgqldeAealLdalpeedp 56 
                 a+g+++eA+ l ++al+          p+ +    +L  +l  +g ldeAe lL +++e+ +
  KOO21409.1 779 AQGQLDEAALLHREALEGrvatlgdrHPHTLTFINNLGLLLQDQGKLDEAELLLREALEARR 840
                 8*******999999995555555666******************************999876 PP

  == domain 6  score: 8.5 bits;  conditional E-value: 0.0025
      TPR_19   3 aegdyaeAlalleqalqe........dpknaearl.lLAeallalgqldeAe 45 
                 ++g+++eA  ll++al++        d+ n  + + +LA++l   gqldeA 
  KOO21409.1 821 DQGKLDEAELLLREALEArreilgdrDA-NTLISIsNLARLLQDKGQLDEAD 871
                 79**************885555553233.5555557***************6 PP

  == domain 7  score: 11.9 bits;  conditional E-value: 0.00022
      TPR_19   3 aegdyaeAlalleqalqe......dpk..naearllLAeallalgqldeAealLdalpee 54 
                 + g+++eA +l+++a++       + +   ++ +++LA++  a+g+++ A+al+da  ++
  KOO21409.1 863 DKGQLDEADPLMSEAFDGcaatlaEGHrtRLRSQAWLADVRRAQGRIESARALVDARVLS 922
                 57999***999999996655555544433666667*******************986665 PP

>> TPR_11  TPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.0   0.0    0.0043       4.8       1      24 [.     606     629 ..     606     632 .. 0.92
   2 ?    1.6   0.0       0.2   2.3e+02       4      24 ..     651     671 ..     648     674 .. 0.84
   3 ?    1.0   0.0      0.31   3.5e+02      32      42 .]     687     697 ..     684     710 .. 0.83
   4 !   12.3   0.3     9e-05       0.1       1      22 [.     732     753 ..     732     756 .. 0.95
   5 ?    1.6   0.1       0.2   2.3e+02       3      21 ..     776     794 ..     773     795 .. 0.78
   6 ?    1.9   0.1      0.17   1.9e+02       3      22 ..     818     837 ..     814     840 .. 0.82
   7 ?   -2.7   0.0       4.4   4.9e+03       6      13 ..     863     870 ..     860     870 .. 0.89
   8 ?   -1.0   0.0       1.3   1.4e+03       2      14 ..     901     913 ..     900     914 .. 0.86

  Alignments for each domain:
  == domain 1  score: 7.0 bits;  conditional E-value: 0.0043
      TPR_11   1 GdayyeqGkyeeAieaYkkAlkld 24 
                 G++++  Gk++eA + +++Al+++
  KOO21409.1 606 GRLLHIMGKLDEAGALLREALRIR 629
                 889999****************97 PP

  == domain 2  score: 1.6 bits;  conditional E-value: 0.2
      TPR_11   4 yyeqGkyeeAieaYkkAlkld 24 
                 + +qGk++eA   +k+ l+ +
  KOO21409.1 651 LKDQGKLPEAEVLWKEVLEVR 671
                 779*******99999999875 PP

  == domain 3  score: 1.0 bits;  conditional E-value: 0.31
      TPR_11  32 ynLGlayykqG 42 
                 +nLGl+++kqG
  KOO21409.1 687 NNLGLLLQKQG 697
                 57888888887 PP

  == domain 4  score: 12.3 bits;  conditional E-value: 9e-05
      TPR_11   1 GdayyeqGkyeeAieaYkkAlk 22 
                 G+++y+qG+++eA   Y++Al+
  KOO21409.1 732 GRLLYDQGRLDEAGVLYREALE 753
                 899*****************97 PP

  == domain 5  score: 1.6 bits;  conditional E-value: 0.2
      TPR_11   3 ayyeqGkyeeAieaYkkAl 21 
                 ++ +qG+++eA    ++Al
  KOO21409.1 776 LLQAQGQLDEAALLHREAL 794
                 5668*******98877777 PP

  == domain 6  score: 1.9 bits;  conditional E-value: 0.17
      TPR_11   3 ayyeqGkyeeAieaYkkAlk 22 
                 ++ +qGk++eA   +++Al+
  KOO21409.1 818 LLQDQGKLDEAELLLREALE 837
                 56689******988888886 PP

  == domain 7  score: -2.7 bits;  conditional E-value: 4.4
      TPR_11   6 eqGkyeeA 13 
                 ++G+++eA
  KOO21409.1 863 DKGQLDEA 870
                 79*****9 PP

  == domain 8  score: -1.0 bits;  conditional E-value: 1.3
      TPR_11   2 dayyeqGkyeeAi 14 
                 d+ ++qG++e A 
  KOO21409.1 901 DVRRAQGRIESAR 913
                 8899******995 PP

>> TPR_3  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.0       1.9   2.2e+03      10      20 ..     608     618 ..     605     621 .. 0.86
   2 ?    3.3   0.0     0.075        84       7      23 ..     689     705 ..     684     707 .. 0.86
   3 ?    3.2   0.0     0.084        94      10      27 ..     734     749 ..     730     754 .. 0.86
   4 ?    3.9   0.0      0.05        56       4      21 ..     770     787 ..     769     790 .. 0.86
   5 ?    4.4   0.0     0.035        39       7      21 ..     815     829 ..     811     833 .. 0.86
   6 ?    1.9   0.0      0.21   2.4e+02       5      20 ..     855     870 ..     853     871 .. 0.86

  Alignments for each domain:
  == domain 1  score: -1.2 bits;  conditional E-value: 1.9
                 HHHHTT-HHHH CS
       TPR_3  10 efynkkkyqeA 20 
                  ++ ++k++eA
  KOO21409.1 608 LLHIMGKLDEA 618
                 5899******9 PP

  == domain 2  score: 3.3 bits;  conditional E-value: 0.075
                 HHHHHHHTT-HHHHHHH CS
       TPR_3   7 yAaefynkkkyqeArel 23 
                 ++  ++ ++k++eA+ l
  KOO21409.1 689 LGLLLQKQGKLDEAEPL 705
                 7899**********855 PP

  == domain 3  score: 3.2 bits;  conditional E-value: 0.084
                 HHHHTT-HHHHHHH..HH CS
       TPR_3  10 efynkkkyqeArelfsYa 27 
                  +y++++++eA  l  Y+
  KOO21409.1 734 LLYDQGRLDEAGVL--YR 749
                 68*********999..75 PP

  == domain 4  score: 3.9 bits;  conditional E-value: 0.05
                 HHHHHHHHHHTT-HHHHH CS
       TPR_3   4 lysyAaefynkkkyqeAr 21 
                 +  ++  ++ +++++eA+
  KOO21409.1 770 ISNLGLLLQAQGQLDEAA 787
                 5678999**********7 PP

  == domain 5  score: 4.4 bits;  conditional E-value: 0.035
                 HHHHHHHTT-HHHHH CS
       TPR_3   7 yAaefynkkkyqeAr 21 
                 ++  +++++k++eA+
  KOO21409.1 815 LGLLLQDQGKLDEAE 829
                 7899**********8 PP

  == domain 6  score: 1.9 bits;  conditional E-value: 0.21
                 HHHHHHHHHTT-HHHH CS
       TPR_3   5 ysyAaefynkkkyqeA 20 
                   +A  +++k++++eA
  KOO21409.1 855 SNLARLLQDKGQLDEA 870
                 5688899********9 PP

>> Prok-TraM  Prokaryotic Transcriptional repressor TraM
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.0       1.9   2.1e+03      19      40 ..      17      38 ..       7      44 .. 0.85
   2 ?   13.3   0.2   7.3e-05     0.082      12      83 ..      82     155 ..      71     160 .. 0.80

  Alignments for each domain:
  == domain 1  score: -0.9 bits;  conditional E-value: 1.9
                HHCTTS-HHHHHHHHHHHHHHH CS
   Prok-TraM 19 sllsslskseleaLaisAIreh 40
                + ++ l++  l +L+   I++h
  KOO21409.1 17 GKIDYLTDPRLAKLTFASIKKH 38
                5677899999***********9 PP

  == domain 2  score: 13.3 bits;  conditional E-value: 7.3e-05
                 XSSTHHHHHCTTS-HHHHHHHHHHHHHHHHHHHHHHHHHHHCHHH..SCHHHHTTSCHHSHHHHHHHHHHHHHH CS
   Prok-TraM  12 delkplesllsslskseleaLaisAIrehRrllaaaeavyeewvr..asadekvseavleelqeeYveaqkese 83 
                 del p++  + + +k ++e++a +A  eh++ l+ +e+    ++r  ++++++v+  vl+++  + +++ k+ +
  KOO21409.1  82 DELGPIKTFTPGFKKGDVERVAAKAAEEHKKKLESDEQKTTRLARekLEHEASVQRPVLADQAAAGIAQFKQEQ 155
                 78999999*****************************9877776522677778888888888777777666655 PP

>> Osmo_CC  Osmosensory transporter coiled coil
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.5   0.2      0.16   1.7e+02       8      34 ..     480     509 ..     478     515 .. 0.72
   2 ?    6.2   0.0     0.011        13      29      44 ..     582     597 ..     580     598 .. 0.93
   3 ?   -0.3   0.1       1.2   1.3e+03      31      42 ..     668     679 ..     665     681 .. 0.88
   4 ?    4.7   0.0     0.032        36      30      45 ..     709     724 ..     707     724 .. 0.94
   5 ?    6.3   0.0    0.0099        11      29      44 ..     750     765 ..     749     766 .. 0.92
   6 ?    0.8   0.1      0.53   5.9e+02      29      44 ..     792     807 ..     790     808 .. 0.88
   7 ?   -2.9   0.2       7.6   8.5e+03      12      36 ..     834     841 ..     826     846 .. 0.55

  Alignments for each domain:
  == domain 1  score: 2.5 bits;  conditional E-value: 0.16
                 XXXXXXXTHHHHHHHHH...HHHHHHHHHH CS
     Osmo_CC   8 elLqehYdnIEqkvedi...deeIaaLeek 34 
                 elL  ++d+I   v  i   d++I+++e +
  KOO21409.1 480 ELLTRRFDEIAGIVAGIdaaDAQITKIEDR 509
                 899999999987665551116799998876 PP

  == domain 2  score: 6.2 bits;  conditional E-value: 0.011
                 HHHHHHHHHHHHH--- CS
     Osmo_CC  29 aaLeekRqrLvdqHPk 44 
                 +aLe++R +L ++HP+
  KOO21409.1 582 EALEARRATLGNRHPD 597
                 68*************7 PP

  == domain 3  score: -0.3 bits;  conditional E-value: 1.2
                 HHHHHHHHHHH- CS
     Osmo_CC  31 LeekRqrLvdqH 42 
                 Le +R +L d+H
  KOO21409.1 668 LEVRRAQLGDRH 679
                 889********* PP

  == domain 4  score: 4.7 bits;  conditional E-value: 0.032
                 HHHHHHHHHHHH---X CS
     Osmo_CC  30 aLeekRqrLvdqHPkl 45 
                 aLe++R +L  +HP++
  KOO21409.1 709 ALEARRATLPYRHPDM 724
                 79************98 PP

  == domain 5  score: 6.3 bits;  conditional E-value: 0.0099
                 HHHHHHHHHHHHH--- CS
     Osmo_CC  29 aaLeekRqrLvdqHPk 44 
                 +aLe++R +L dqHP 
  KOO21409.1 750 EALEAQRATLGDQHPS 765
                 68*************5 PP

  == domain 6  score: 0.8 bits;  conditional E-value: 0.53
                 HHHHHHHHHHHHH--- CS
     Osmo_CC  29 aaLeekRqrLvdqHPk 44 
                 +aLe +  +L d+HP+
  KOO21409.1 792 EALEGRVATLGDRHPH 807
                 578889999******8 PP

  == domain 7  score: -2.9 bits;  conditional E-value: 7.6
                 XXXTHHHHHHHHHHHHHHHHHHHHH CS
     Osmo_CC  12 ehYdnIEqkvedideeIaaLeekRq 36 
                 e                 aLe++R+
  KOO21409.1 834 E-----------------ALEARRE 841
                 4.................4555555 PP

>> TPR_14  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.8   0.1     0.003       3.3       5      30 ..     561     586 ..     558     598 .. 0.88
   2 ?    5.8   0.2     0.026        30       7      30 ..     605     628 ..     604     636 .. 0.90
   3 ?    8.4   0.2    0.0038       4.3       7      30 ..     689     712 ..     688     726 .. 0.83
   4 ?    8.0   0.4    0.0052       5.9       7      31 ..     731     755 ..     730     763 .. 0.91
   5 ?    4.7   0.2      0.06        68       7      29 ..     773     795 ..     772     808 .. 0.88
   6 ?    6.9   0.5     0.012        13       7      30 ..     815     838 ..     814     850 .. 0.87
   7 ?   -0.7   0.1       3.2   3.6e+03       7      22 ..     857     872 ..     856     884 .. 0.82
   8 ?    4.5   0.4     0.068        76       4      27 ..     896     919 ..     893     934 .. 0.86

  Alignments for each domain:
  == domain 1  score: 8.8 bits;  conditional E-value: 0.003
      TPR_14   5 lalaeallalGdpdeAiallrralal 30 
                  +l+++l +lG++ eA+ +lr+al++
  KOO21409.1 561 TQLGRLLQNLGKHLEAAPMLREALEA 586
                 689*********************96 PP

  == domain 2  score: 5.8 bits;  conditional E-value: 0.026
      TPR_14   7 laeallalGdpdeAiallrralal 30 
                 l+++l   G++deA allr+al+ 
  KOO21409.1 605 LGRLLHIMGKLDEAGALLREALRI 628
                 7899999**************985 PP

  == domain 3  score: 8.4 bits;  conditional E-value: 0.0038
      TPR_14   7 laeallalGdpdeAiallrralal 30 
                 l+ +l  +G++deA+ llr al++
  KOO21409.1 689 LGLLLQKQGKLDEAEPLLRSALEA 712
                 5677889***************95 PP

  == domain 4  score: 8.0 bits;  conditional E-value: 0.0052
      TPR_14   7 laeallalGdpdeAiallrralala 31 
                 l+++l+ +G++deA  l+r+al+++
  KOO21409.1 731 LGRLLYDQGRLDEAGVLYREALEAQ 755
                 799*******************964 PP

  == domain 5  score: 4.7 bits;  conditional E-value: 0.06
      TPR_14   7 laeallalGdpdeAiallrrala 29 
                 l+ +l a+G++deA+ l r+al+
  KOO21409.1 773 LGLLLQAQGQLDEAALLHREALE 795
                 6778999************9997 PP

  == domain 6  score: 6.9 bits;  conditional E-value: 0.012
      TPR_14   7 laeallalGdpdeAiallrralal 30 
                 l+ +l  +G++deA+ llr+al++
  KOO21409.1 815 LGLLLQDQGKLDEAELLLREALEA 838
                 5678889***************96 PP

  == domain 7  score: -0.7 bits;  conditional E-value: 3.2
      TPR_14   7 laeallalGdpdeAia 22 
                 la++l   G++deA  
  KOO21409.1 857 LARLLQDKGQLDEADP 872
                 7999999******955 PP

  == domain 8  score: 4.5 bits;  conditional E-value: 0.068
      TPR_14   4 llalaeallalGdpdeAiallrra 27 
                 ++ la++ +a+G+ + A+al +++
  KOO21409.1 896 QAWLADVRRAQGRIESARALVDAR 919
                 6789***************99986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (953 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       807  (0.0450109); expected 358.6 (0.02)
Passed bias filter:                      465  (0.0259356); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                        18  (0.00100396); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              16  [number of targets reported over threshold]
# CPU time: 0.77u 0.30s 00:00:01.07 Elapsed: 00:00:00.62
# Mc/sec: 4650.74
//
Query:       KOO21410.1  [L=160]
Description: hypothetical protein Ctob_000364 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    0.00014   21.6   2.6    0.00044   20.0   2.6    1.8  1  zf-Nse    Zinc-finger of the MIZ type in Nse subunit
  ------ inclusion threshold ------
       0.33   10.7   4.5       0.46   10.3   3.8    1.7  1  zf-MIZ    MIZ/SP-RING zinc finger


Domain annotation for each model (and alignments):
>> zf-Nse  Zinc-finger of the MIZ type in Nse subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.0   2.6   4.9e-08   0.00044       2      57 .]      13      74 ..      12      74 .. 0.80

  Alignments for each domain:
  == domain 1  score: 20.0 bits;  conditional E-value: 4.9e-08
                XXXXXSSBXXSB-TTTSSB-SSEEEESSS--EEEHHHHHHHC.......TTTS-EE-SCCC-S CS
      zf-Nse  2 elaieeerislkCPltlqpfeePvtskkCpHvFEreaIleli.......krkktvkCPvagCs 57
                e+++e e+  l+C l+ q +++P t   C H   r ++++l         + ++  CPv gC+
  KOO21410.1 13 EVQVEWEQLRLQCVLSHQRLTDPATLEGCMHLS-RCNLEALEeirrhqsCQARSSVCPVHGCN 74
                789****************************84.3333333244577666677888******7 PP

>> zf-MIZ  MIZ/SP-RING zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   3.8   5.1e-05      0.46       2      36 ..      22      56 ..      21      76 .. 0.77

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 5.1e-05
                ESB-TTTSSB-SSEEEETT--SS--EEHHHHHHHH CS
      zf-MIZ  2 slkCplslsrikiPvrgekCkHlqCfdlesyleln 36
                +l+C ls++r++ P+  e C Hl   +le+  e+ 
  KOO21410.1 22 RLQCVLSHQRLTDPATLEGCMHLSRCNLEALEEIR 56
                79********************9877777665554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (160 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       601  (0.0335211); expected 358.6 (0.02)
Passed bias filter:                      410  (0.022868); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.37u 0.23s 00:00:00.60 Elapsed: 00:00:00.37
# Mc/sec: 1296.65
//
Query:       KOO21411.1  [L=365]
Description: hypothetical protein Ctob_000361 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (365 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       718  (0.0400469); expected 358.6 (0.02)
Passed bias filter:                      163  (0.00909142); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.49u 0.29s 00:00:00.78 Elapsed: 00:00:00.43
# Mc/sec: 2546.64
//
Query:       KOO21412.1  [L=210]
Description: hypothetical protein Ctob_000360, partial [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (210 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       788  (0.0439511); expected 358.6 (0.02)
Passed bias filter:                      402  (0.0224218); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.40u 0.26s 00:00:00.66 Elapsed: 00:00:00.40
# Mc/sec: 1571.48
//
Query:       KOO21413.1  [L=635]
Description: putative short-chain dehydrogenase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.6e-13   50.4   0.0    3.2e-13   49.4   0.0    1.4  2  NDC10_II  Centromere DNA-binding protein complex CBF3 subunit
    3.6e-05   24.0   0.0    6.6e-05   23.1   0.0    1.5  1  GCR1_C    Transcriptional activator of glycolytic enzymes
  ------ inclusion threshold ------
       0.12   12.6   0.1       0.64   10.2   0.0    2.3  2  Clp_N     Clp amino terminal domain, pathogenicity island com


Domain annotation for each model (and alignments):
>> NDC10_II  Centromere DNA-binding protein complex CBF3 subunit, domain 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.4   0.0   5.3e-17   3.2e-13      64     268 ..     196     390 ..     175     409 .. 0.86
   2 ?   -4.2   0.5       1.1   6.7e+03     295     317 ..     445     467 ..     443     468 .. 0.85

  Alignments for each domain:
  == domain 1  score: 49.4 bits;  conditional E-value: 5.3e-17
                 -TT-EEEEEEE.----------EEEEEEE---SSGGG-HHHHHHHHHHHHHH-BTTTB----S--GGG-STGGGSBSS--SSTT....S---HHHHHHH CS
    NDC10_II  64 gptpciplvlt.krngktnqlgqletltvlrqkcPllCpltslAaYLflRFygvkevakgdgfPdlenrqkwydlpLikgksae....dYPreetlsny 157
                   +  +p++   +  gktnq g++++ ++l++++P+lC++    a +++RF ++k +     fPdl + +++ + p +++ + e    +Y   ++  + 
  KOO21413.1 196 VGSSGMPMLANvTDGGKTNQNGRISYSALLPHRNPVLCTIFAKGALFLHRFLIMKVT-----FPDLLEPKDIFKRPTLRQGHDEmhgvSY---DSSYSI 286
                 44555666554156689************************************9888.....*****************655555899**...999999 PP

                 HHHHHHHTT----THHHHS.--S...S---EEEHHHHHHHT-GGG-GGGTTSGGGS-HHHHHHHTT--TT----------........-S---HHHHTT CS
    NDC10_II 158 yskvfrycgleykkkehferksgaktaelpgvseeeirragrknqeamstaflskiPldfvrilNlkspiesagnkskkqgnfylpr.rieppesLlvq 255
                 +++ ++ +g    k  h +r +  + +   gv+ ++irr+ +  ++++ + +l + P+    +         ag++++ + +    + +i++ e+L+++
  KOO21413.1 287 MKRLYEAVGAVPTKCLHQGRGECQRVLDDLGVDLDQIRRLCKYVHDEQTESYLLNPPMSALLAA--------AGFDHQAPRAAHAAHlSIRVTEELVTA 377
                 9*******************9999*********************************9877666........9999999999999999*********** PP

                 SSTHHHHHHHSS. CS
    NDC10_II 256 lFPeideykrefe 268
                 l P++ ++++++e
  KOO21413.1 378 LLPQLIAAQAQVE 390
                 ***9988777765 PP

  == domain 2  score: -4.2 bits;  conditional E-value: 1.1
                 HHHHHH-TTSGGGGSGGGGSHHH CS
    NDC10_II 295 pllyklFPdhdlfkdpvfqnsdf 317
                 p+  ++F +  lf+ p f+++ f
  KOO21413.1 445 PIYKRFFAKNRLFQLPFFSSQVF 467
                 6677899999*******998766 PP

>> GCR1_C  Transcriptional activator of glycolytic enzymes
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.1   0.0   1.1e-08   6.6e-05       1      37 [.     573     609 ..     573     634 .. 0.87

  Alignments for each domain:
  == domain 1  score: 23.1 bits;  conditional E-value: 1.1e-08
      GCR1_C   1 fklsreiktVedlwnEykeglngkpsikslekkygkr 37 
                 + l ++ +tV  lw+Ey++glng p ++ l + +g++
  KOO21413.1 573 YVLAPNKETVARLWEEYTTGLNGGPAVRDLVRDHGQE 609
                 6789999***********************9999876 PP

>> Clp_N  Clp amino terminal domain, pathogenicity island component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.0   0.00011      0.64      24      46 ..     303     325 ..     302     326 .. 0.91
   2 ?   -2.7   0.0       1.2   6.9e+03      32      43 ..     346     357 ..     344     361 .. 0.80

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.00011
                 HSCTSHHHHHHHHTTSSHHHHHH CS
       Clp_N  24 eeddGlaarlLkkaGvdldalrk 46 
                  +++G  +r+L ++Gvdld++r+
  KOO21413.1 303 HQGRGECQRVLDDLGVDLDQIRR 325
                 6899*****************96 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 1.2
                 HHHHHTTSSHHH CS
       Clp_N  32 rlLkkaGvdlda 43 
                  lL++aG+d +a
  KOO21413.1 346 ALLAAAGFDHQA 357
                 589999999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (635 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       505  (0.0281667); expected 358.6 (0.02)
Passed bias filter:                      416  (0.0232026); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.59u 0.28s 00:00:00.87 Elapsed: 00:00:00.43
# Mc/sec: 4390.98
//
Query:       KOO21414.1  [L=488]
Description: hypothetical protein Ctob_000378 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (488 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       378  (0.0210832); expected 358.6 (0.02)
Passed bias filter:                      315  (0.0175693); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.49u 0.26s 00:00:00.75 Elapsed: 00:00:00.42
# Mc/sec: 3492.77
//
Query:       KOO21415.1  [L=637]
Description: hypothetical protein Ctob_000379 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      6e-26   91.0   0.0    1.1e-25   90.1   0.0    1.4  1  ABC1      ABC1 family
    5.7e-05   23.1   0.1    0.00015   21.8   0.1    1.9  1  APH       Phosphotransferase enzyme family
     0.0035   16.8   0.0     0.0063   15.9   0.0    1.3  1  Pkinase   Protein kinase domain
  ------ inclusion threshold ------
       0.11   12.0   0.1       0.43   10.1   0.0    2.0  2  DUF2587   Protein of unknown function (DUF2587)


Domain annotation for each model (and alignments):
>> ABC1  ABC1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   90.1   0.0   2.4e-29   1.1e-25       2     118 ..     188     310 ..     187     311 .. 0.93

  Alignments for each domain:
  == domain 1  score: 90.1 bits;  conditional E-value: 2.4e-29
        ABC1   2 elgkkleeiFaefdeePiAaASiaqVhrAklksgeeVavKvqrpgvkkriksDlellkllakllkkflkelr.......ldleelvdefskslleEldf 93 
                 elg++l+ +F++f+ ePiA AS++qVhrA+l + + VavKvqr ++++ +++D+ +++l+a++ + f k+ +       +d+ +++d++++ l+ E+d+
  KOO21415.1 188 ELGQPLDAVFSSFELEPIAGASLGQVHRATLGD-QPVAVKVQRRNLRELFDTDFFNIRLMARVGNFFEKRSQrkagataRDWLQYTDDAARLLYLEIDY 285
                 89****************************975.79**************************999999887666666667899999************* PP

        ABC1  94 erEAknaekfrenfaklkevkvPkv 118
                 ++EAkna  f++ + k  +v vPkv
  KOO21415.1 286 LNEAKNARMFATSLPKGLDVVVPKV 310
                 ************************9 PP

>> APH  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.8   0.1   3.4e-08   0.00015     147     197 ..     345     390 ..     206     394 .. 0.85

  Alignments for each domain:
  == domain 1  score: 21.8 bits;  conditional E-value: 3.4e-08
                 HHHHHHHHHHHHH--SSS-EEEE-SS-SGGGEEEC..TTEEEEE---TT-E CS
         APH 147 eleeqvlaalaallpgelptvllHgDlhpgNllvdpddgrvtGviDfedag 197
                  l++qv + ++  l+   + ++lH+D+hpgN+ vd ++gr+  + Df+++ 
  KOO21415.1 345 TLAKQVVDIFLTQLL---RSGVLHCDPHPGNMCVD-AKGRL-VFYDFGMVD 390
                 455567777777777...8****************.77777.699**9986 PP

>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.0   1.4e-06    0.0063      70     152 ..     315     396 ..     303     407 .. 0.82

  Alignments for each domain:
  == domain 1  score: 15.9 bits;  conditional E-value: 1.4e-06
                 SSEEEEEEE--TTEBHHHHHHHHSS--HHHHHHHHHHHHHH.HHHHHHTTEE-SS-SGGGEEEETTTEEEE-SGTTSEESSSSC CS
     Pkinase  70 kdelylvleyveggeladllerkgslseeeakkiakqileg.leylHskgiiHrDlKpeNiLidekgelKitDFGlakelesss 152
                 ++ ++l +eyv+  +l+d  +   + s  +   +akq++   l  l + g++H+D  p N+ +d kg l   DFG++  le + 
  KOO21415.1 315 TTARMLTMEYVQSMKLTDTEK--LKASGLDGPTLAKQVVDIfLTQLLRSGVLHCDPHPGNMCVDAKGRLVFYDFGMVDTLEPKV 396
                 5667899*****999988876..456666777777777764378999******************************9998865 PP

>> DUF2587  Protein of unknown function (DUF2587)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.0   9.5e-05      0.43      65     104 ..     390     431 ..     387     473 .. 0.81
   2 ?   -2.1   0.0      0.54   2.4e+03     107     136 ..     541     568 ..     531     588 .. 0.58

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 9.5e-05
     DUF2587  65 eglaPelveelerlslp.ftedevPsdaelriaqaqlv.GWl 104
                 ++l P++++ l++ +   f   + Ps aelr a +qlv G l
  KOO21415.1 390 DTLEPKVQQGLRNAAFAlFGGSASPSTAELREAASQLVeGLL 431
                 789999999999988754889999*************94444 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 0.54
     DUF2587 107 lfhGiqtalvaqqmaaraqleqlrralPpg 136
                 lf Gi++ + a    a ++ e +r al +g
  KOO21415.1 541 LFDGIKAVVEAPSRVAYVE-ETMR-ALAAG 568
                 6666666666654433322.3333.35555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (637 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       513  (0.0286129); expected 358.6 (0.02)
Passed bias filter:                      437  (0.0243739); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.59u 0.25s 00:00:00.84 Elapsed: 00:00:00.41
# Mc/sec: 4630.40
//
Query:       KOO21416.1  [L=170]
Description: hypothetical protein Ctob_000372 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.016   15.0   0.7      0.023   14.5   0.3    1.4  1  AGTRAP    Angiotensin II, type I receptor-associated protein 
      0.073   13.0   1.0       0.22   11.5   0.1    2.1  2  SafA      Two-component-system connector protein
      0.092   12.6   0.0        0.2   11.6   0.0    1.5  1  RHH_4     Ribbon-helix-helix domain


Domain annotation for each model (and alignments):
>> AGTRAP  Angiotensin II, type I receptor-associated protein (AGTRAP)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.5   0.3   3.8e-06     0.023      41      98 ..      55     120 ..      42     127 .. 0.81

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 3.8e-06
      AGTRAP  41 qrdsidAismfliglvltillDiihlsiyyprka........lsdvkrfsagmailsLllkPvscf 98 
                 +  s  Ai +f    ++t+l+D++ l  y+p +         l+   + s+++++l+L+ k ++++
  KOO21416.1  55 HTRSYGAIRSFWFFTLVTVLVDVLWLLAYSPLRPmewdtlqqLARKDQMSVTLSVLNLVYKLLAVY 120
                 456899************************9843456776667777889************98887 PP

>> SafA  Two-component-system connector protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.1       0.3   1.8e+03      10      30 ..      15      36 ..      12      39 .. 0.63
   2 ?   11.5   0.1   3.7e-05      0.22      16      50 ..      99     134 ..      92     140 .. 0.83

  Alignments for each domain:
  == domain 1  score: -1.0 bits;  conditional E-value: 0.3
        SafA 10 itqrdnykeimsvivvv.lllt 30
                i q dn   +++ i v+ ++lt
  KOO21416.1 15 IEQCDNLTWVVTGIFVLsIFLT 36
                6788888888877755313333 PP

  == domain 2  score: 11.5 bits;  conditional E-value: 3.7e-05
        SafA  16 ykeimsvivvvllltltliaifsaid.qlsisemGr 50 
                  k+ msv + vl l   l+a++ a+  ql+++e   
  KOO21416.1  99 RKDQMSVTLSVLNLVYKLLAVYNAVQlQLALTEREE 134
                 6899********************976898888655 PP

>> RHH_4  Ribbon-helix-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   3.3e-05       0.2      17      37 ..      86     106 ..      85     115 .. 0.89

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 3.3e-05
                 EEHHHHHHHHHHHHHTT--HH CS
       RHH_4  17 LEpafWdaLeeiArregltvn 37 
                 L p+ Wd+L+++Ar+++++v 
  KOO21416.1  86 LRPMEWDTLQQLARKDQMSVT 106
                 77999**************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (170 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       558  (0.0311228); expected 358.6 (0.02)
Passed bias filter:                      306  (0.0170673); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.36u 0.24s 00:00:00.60 Elapsed: 00:00:00.36
# Mc/sec: 1404.52
//
Query:       KOO21417.1  [L=598]
Description: carboxylate transporter [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.2e-29  101.4  22.5    5.2e-29  101.4  22.5    2.1  2  CitMHS    Citrate transporter


Domain annotation for each model (and alignments):
>> CitMHS  Citrate transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.2   0.5     0.026   4.7e+02      75     107 ..      78     110 ..      59     137 .. 0.69
   2 !  101.4  22.5   2.9e-33   5.2e-29       1     300 []     155     547 ..     155     593 .. 0.82

  Alignments for each domain:
  == domain 1  score: -0.2 bits;  conditional E-value: 0.026
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
      CitMHS  75 lvllvlltallsafvsndgvvlimipivlslak 107
                 +++ +l++a++ +f   dg+++i ++ + s+ +
  KOO21417.1  78 VFVAILGSAIIIGFSAMDGDICIQTANISSVRN 110
                 456678899999999999999998887777766 PP

  == domain 2  score: 101.4 bits;  conditional E-value: 2.9e-33
                 xxxxxxxx.xxxxxxxxxxxxxx....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
      CitMHS   1 lvllilek.lrldvvallvlvll....vltieealsgiaspiillllgamiigaaleetGlfdrlaakllrlaggkrdllvllvlltallsafvsndgv 94 
                 ++l+++ +  + d+v+l  +++l    ++  ++a sg+ s+ il ++ + ++ +aleet +++ ++  +l    ++   +++l l +  lsaf++n++ 
  KOO21417.1 155 YALIVMANdAPPDLVMLAFTIVLifskIIADKDAWSGFCSTSILAIASLLVMCRALEETKAVEAVILPILGNPSNHFSAILRLTLPVICLSAFLNNTPI 253
                 789999999999999998888889999999999*************************************988887779******************** PP

                 xxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx............................xxxxxxxxxxx RF
      CitMHS  95 vlimipivlslakrlkklppl.lliplalaaniggaltpiGtpttraaarpglslpnlll............................lalllvgllpl 164
                 v++++ ++ ++a+r ++l++  ll+pl++aa +gg++t+iGt+            +nl+l                            +a ++ +++++
  KOO21417.1 254 VAMLMGVCENWAAR-SNLSVKcLLMPLSYAALLGGCCTLIGTS------------TNLVLnglikddknppmkpftlfqfsavgypgaVAGCVYMAIFC 339
                 *************9.9999999*********************............88888777788888888888777877777655533344444444 PP

                 xxxxxxxxxxxxxxxxx...............................................xxxxxxxxxxxxxxxxxxxxxxxxxx......... RF
      CitMHS 165 vllfmfgvalalpvnap...............................................kvkkqkaiieaiarsllpvatillla......... 207
                  ++f        p  ap                                               +  k++++i+++  ++    ++++l+         
  KOO21417.1 340 PIYF-------RPKRAPgakaetlwerfrygpfystrpdgygkstqsttlddaaaettaagrpfWPPKKADVIKKLRIAAC-LSALVTLLclsafeivd 430
                 4444.......3333335556777888888888888888888877777777777777777777766666666666555444.22222222356777777 PP

                 .......................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..x.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
      CitMHS 208 .......................ykkveWsvlllfaGvfllvgaleqtGilealadllga..g.gplvalalvlgliallsafisnvavaalmapialg 280
                                         +++++ vll +a  f+ ++al++tG+++  + +l++  + g +  l++++++++ll++++sn ++ ++++ ++l 
  KOO21417.1 431 lfplalaisaafifigamtldqaWRAINYRVLLVVACSFGPGKALTNTGLAKFAGVALQSmtSlGSFGFLFMIVLFSSLLTSIVSNSTA-VITIYAILR 528
                 77777777777778888899999**************************888887777555535677777999**************77.688888888 PP

                 xxxxxxxxxxxxxxxxxxxx RF
      CitMHS 281 mapalgllspsplalalavg 300
                 ++++ g +s+++++ ++++g
  KOO21417.1 529 TMKVPG-ISMEAMMCCMMLG 547
                 888878.7788888877765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (598 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       701  (0.0390987); expected 358.6 (0.02)
Passed bias filter:                      299  (0.0166769); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.52u 0.26s 00:00:00.78 Elapsed: 00:00:00.40
# Mc/sec: 4533.05
//
Query:       KOO21418.1  [L=97]
Description: hypothetical protein Ctob_000359, partial [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (97 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       267  (0.0148921); expected 358.6 (0.02)
Passed bias filter:                      178  (0.00992805); expected 358.6 (0.02)
Passed Vit filter:                         8  (0.000446204); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.23s 00:00:00.59 Elapsed: 00:00:00.39
# Mc/sec: 741.05
//
Query:       KOO21419.1  [L=114]
Description: hypothetical protein Ctob_000363 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.4e-09   38.2   0.0    2.4e-09   37.4   0.0    1.5  2  PDZ       PDZ domain
    5.4e-09   35.8   0.0    7.6e-09   35.3   0.0    1.3  1  PDZ_6     PDZ domain
    3.3e-06   27.3   0.0      4e-06   27.1   0.0    1.2  1  PDZ_2     PDZ domain


Domain annotation for each model (and alignments):
>> PDZ  PDZ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.4   0.0   4.1e-13   2.4e-09      24      81 ..      26      86 ..       2      87 .. 0.90
   2 ?   -2.9   0.0       1.5   8.9e+03       6      16 ..      97     106 ..      94     110 .. 0.74

  Alignments for each domain:
  == domain 1  score: 37.4 bits;  conditional E-value: 4.1e-13
                SSSSEEEEEECTTSHHHHHTSSTTEEEEEETTEETTTSHHHHHHHHHHTTTS...EEEEEE CS
         PDZ 24 gdkgifvsevlpggaaeadglkvGDkIlsvNgvdvenvsheeavqaikgskg...kvtLti 81
                g+ g+fv ++ pgg ae++g+ vGD+++++Ng+ v++ she+a  +i  + +   +++Lt+
  KOO21419.1 26 GAVGVFVFSLKPGGRAERAGVLVGDVLVRINGKAVAEGSHEQASREISRCVKakeTISLTV 86
                678********************************************99999888999998 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 1.5
                 TSTTSESSEEE CS
         PDZ   6 kegrgglGfsl 16 
                 + + g++G++ 
  KOO21419.1  97 R-RDGRIGITC 106
                 4.789999986 PP

>> PDZ_6  PDZ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.3   0.0   1.3e-12   7.6e-09       4      43 ..      34      73 ..      31      87 .. 0.80

  Alignments for each domain:
  == domain 1  score: 35.3 bits;  conditional E-value: 1.3e-12
       PDZ_6  4 aVdpgsPAdrAGlrvGDiilsvNGqpveglsladvaallr 43
                + +pg+ A+rAG+ vGD+++ +NG+ v  +s +++++ + 
  KOO21419.1 34 SLKPGGRAERAGVLVGDVLVRINGKAVAEGSHEQASREIS 73
                568****************************998776554 PP

>> PDZ_2  PDZ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.1   0.0   6.7e-10     4e-06      13      70 ..      27      87 ..       8      96 .. 0.86

  Alignments for each domain:
  == domain 1  score: 27.1 bits;  conditional E-value: 6.7e-10
                ..-EEEEEE-TTSGGGGT.--TT-EEEEETTB--..SSHHHHHHHHH.TS-TT-EEEEEEE CS
       PDZ_2 13 tggvlvvsVkeggPaakaglkagDvilkvdgkkv..ksledlislll.kkkpGdtVkltvl 70
                + gv v s k+gg a++ag+  gDv++ ++gk+v   s e+  ++++   k+ +t++ltvl
  KOO21419.1 27 AVGVFVFSLKPGGRAERAGVLVGDVLVRINGKAVaeGSHEQASREISrCVKAKETISLTVL 87
                56899*****************************5556666779999788999*****997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (114 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       336  (0.0187406); expected 358.6 (0.02)
Passed bias filter:                      298  (0.0166211); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.33u 0.27s 00:00:00.60 Elapsed: 00:00:00.39
# Mc/sec: 876.75
//
Query:       KOO21420.1  [L=266]
Description: surface antigen -like protein, partial [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.3e-92  305.6   0.1    5.5e-34  116.9   0.2    3.0  3  LRR_5       BspA type Leucine rich repeat region (6 copies)
    3.6e-20   71.5   0.0    0.00058   19.6   0.0    7.2  9  LRR_8       Leucine rich repeat
  ------ inclusion threshold ------
      0.014   15.5   0.0        7.7    6.7   0.0    3.9  4  DUF717      Protein of unknown function (DUF717)
       0.16   12.6  19.9        1.3    9.6   5.2    3.4  3  Forkhead_N  Forkhead N-terminal region
       0.36   11.3   3.1    1.1e+02    3.4   0.0    5.2  7  LRR_4       Leucine Rich repeats (2 copies)


Domain annotation for each model (and alignments):
>> LRR_5  BspA type Leucine rich repeat region (6 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   90.0   0.0   3.1e-29   1.1e-25      14     103 ..       2      92 ..       1      93 [. 0.95
   2 !  116.9   0.2   1.5e-37   5.5e-34       2     103 ..      81     183 ..      80     183 .. 0.96
   3 !  108.9   0.0   4.4e-35   1.6e-31       6     115 ..     154     265 ..     151     266 .] 0.97

  Alignments for each domain:
  == domain 1  score: 90.0 bits;  conditional E-value: 3.1e-29
       LRR_5  14 tsitipssvtsIgeyaFsnctslksitlpsslteigsyaFsncssltsitipssltsigeyaFsncsslkeitlpsnlttigssaFsnc.s 103
                 ts+ +p  +tsIg +aF  c+s++si+lp +l +i++yaF+ncss+tsi +p slt++g  aF++cs l++i lp  l +ig +aF++c s
  KOO21420.1   2 TSMALPAGLTSIGRSAFDCCSSMTSIQLPAGLMSISEYAFANCSSMTSIALPASLTRLGGGAFYGCSLLTSIALPAGLMSIGVNAFYSCsS 92 
                 78999***********************************************************************************955 PP

  == domain 2  score: 116.9 bits;  conditional E-value: 1.5e-37
       LRR_5   2 eIgsyaFync.nltsitipssvtsIgeyaFsnctslksitlpsslteigsyaFsncssltsitipssltsigeyaFsncsslkeitlpsnlttigssaF 99 
                 +Ig +aFy+c +ltsi++p s+tsIge+ Fs+c+s++si+lp +lt+i+++aF++cssltsi +p slts+g  aF++css+++i lp +lt+ig++aF
  KOO21420.1  81 SIGVNAFYSCsSLTSIELPASLTSIGERGFSGCSSMTSIQLPAGLTSISESAFEDCSSLTSIALPASLTSLGGGAFRGCSSMTSIALPASLTSIGERAF 179
                 6999*********************************************************************************************** PP

       LRR_5 100 sncs 103
                 s+cs
  KOO21420.1 180 SGCS 183
                 *995 PP

  == domain 3  score: 108.9 bits;  conditional E-value: 4.4e-35
       LRR_5   6 yaFync.nltsitipssvtsIgeyaFsnctslksitlpsslteigsyaFsncssltsitipssltsigeyaFsncsslkeitlpsnlttigssaFsnc. 102
                  aF++c ++tsi +p s+tsIge+aFs+c+sl+si+lp +lt++++yaF++css+tsi +p  l sige +F +cssl+ i lp  lt++g saFs+c 
  KOO21420.1 154 GAFRGCsSMTSIALPASLTSIGERAFSGCSSLTSIQLPAGLTSLSEYAFEDCSSMTSIALPAGLMSIGEGVFWGCSSLTLIALPACLTSLGGSAFSGCs 252
                 69************************************************************************************************9 PP

       LRR_5 103 slesitipssvtk 115
                 s++ i++p+ +t+
  KOO21420.1 253 SMTLIELPAGLTS 265
                 9*******99886 PP

>> LRR_8  Leucine rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.4   0.0     0.078   2.8e+02      37      56 ..      10      29 ..       9      31 .. 0.71
   2 !    8.5   0.0   0.00047       1.7      15      56 ..      35      75 ..      31      78 .. 0.88
   3 !   12.2   0.0   3.2e-05      0.11      15      56 ..      81     121 ..      77     123 .. 0.93
   4 !   12.1   0.0   3.5e-05      0.13      13      56 ..     102     144 ..     101     146 .. 0.92
   5 !   15.8   0.0   2.5e-06    0.0089      13      56 ..     125     167 ..     122     170 .. 0.94
   6 !   19.6   0.0   1.6e-07   0.00058      12      56 ..     147     190 ..     146     192 .. 0.96
   7 !   14.4   0.0   6.7e-06     0.024      12      56 ..     170     213 ..     168     215 .. 0.92
   8 !    8.2   0.0   0.00055         2      13      56 ..     194     236 ..     192     240 .. 0.87
   9 ?    4.1   0.0     0.011        40      13      32 ..     240     259 ..     238     260 .. 0.77

  Alignments for each domain:
  == domain 1  score: 1.4 bits;  conditional E-value: 0.078
                --GGGGGGGTT--S-.EEE- CS
       LRR_8 37 lttlspgafsgLpsLrsLdL 56
                lt++ + af++++s +s+ L
  KOO21420.1 10 LTSIGRSAFDCCSSMTSIQL 29
                56777777777777777766 PP

  == domain 2  score: 8.5 bits;  conditional E-value: 0.00047
                EE-TTSSTT-TT--EEE--SS---GGGGGGGTT--S-.EEE- CS
       LRR_8 15 slddeaFkglsnLkvLdLsnNllttlspgafsgLpsLrsLdL 56
                s++  aF ++s+++++ L    lt+l  gaf g++ L+s+ L
  KOO21420.1 35 SISEYAFANCSSMTSIALPAS-LTRLGGGAFYGCSLLTSIAL 75
                788999999999999999999.999*********99999876 PP

  == domain 3  score: 12.2 bits;  conditional E-value: 3.2e-05
                 EE-TTSSTT-TT--EEE--SS---GGGGGGGTT--S-.EEE- CS
       LRR_8  15 slddeaFkglsnLkvLdLsnNllttlspgafsgLpsLrsLdL 56 
                 s++  aF+++s+L++++L    lt++ ++ fsg++s +s+ L
  KOO21420.1  81 SIGVNAFYSCSSLTSIELPAS-LTSIGERGFSGCSSMTSIQL 121
                 78999***************9.****************9988 PP

  == domain 4  score: 12.1 bits;  conditional E-value: 3.5e-05
                 -SEE-TTSSTT-TT--EEE--SS---GGGGGGGTT--S-.EEE- CS
       LRR_8  13 ltslddeaFkglsnLkvLdLsnNllttlspgafsgLpsLrsLdL 56 
                 lts++   F+g+s++++++L    lt++s+ af++++sL+s+ L
  KOO21420.1 102 LTSIGERGFSGCSSMTSIQLPAG-LTSISESAFEDCSSLTSIAL 144
                 89999***************999.***************99876 PP

  == domain 5  score: 15.8 bits;  conditional E-value: 2.5e-06
                 -SEE-TTSSTT-TT--EEE--SS---GGGGGGGTT--S-.EEE- CS
       LRR_8  13 ltslddeaFkglsnLkvLdLsnNllttlspgafsgLpsLrsLdL 56 
                 lts++ +aF+++s+L+++ L    lt+l  gaf+g++s +s+ L
  KOO21420.1 125 LTSISESAFEDCSSLTSIALPAS-LTSLGGGAFRGCSSMTSIAL 167
                 89********************9.**************999876 PP

  == domain 6  score: 19.6 bits;  conditional E-value: 1.6e-07
                 --SEE-TTSSTT-TT--EEE--SS---GGGGGGGTT--S-.EEE- CS
       LRR_8  12 rltslddeaFkglsnLkvLdLsnNllttlspgafsgLpsLrsLdL 56 
                 +ltsl+ +aF+g+s+++++ L    lt++ ++afsg++sL+s+ L
  KOO21420.1 147 SLTSLGGGAFRGCSSMTSIALPAS-LTSIGERAFSGCSSLTSIQL 190
                 599********************9.*****************998 PP

  == domain 7  score: 14.4 bits;  conditional E-value: 6.7e-06
                 --SEE-TTSSTT-TT--EEE--SS---GGGGGGGTT--S-.EEE- CS
       LRR_8  12 rltslddeaFkglsnLkvLdLsnNllttlspgafsgLpsLrsLdL 56 
                 +lts++  aF+g+s+L++++L    lt+ls+ af++++s +s+ L
  KOO21420.1 170 SLTSIGERAFSGCSSLTSIQLPAG-LTSLSEYAFEDCSSMTSIAL 213
                 599******************999.************99998866 PP

  == domain 8  score: 8.2 bits;  conditional E-value: 0.00055
                 -SEE-TTSSTT-TT--EEE--SS---GGGGGGGTT--S-.EEE- CS
       LRR_8  13 ltslddeaFkglsnLkvLdLsnNllttlspgafsgLpsLrsLdL 56 
                 ltsl+  aF+++s+++++ L    l ++ +g+f+g++sL+ + L
  KOO21420.1 194 LTSLSEYAFEDCSSMTSIALPAG-LMSIGEGVFWGCSSLTLIAL 236
                 89999***************999.666778*********99877 PP

  == domain 9  score: 4.1 bits;  conditional E-value: 0.011
                 -SEE-TTSSTT-TT--EEE- CS
       LRR_8  13 ltslddeaFkglsnLkvLdL 32 
                 ltsl+ +aF+g+s+++ ++L
  KOO21420.1 240 LTSLGGSAFSGCSSMTLIEL 259
                 67888888888888877766 PP

>> DUF717  Protein of unknown function (DUF717)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.8   0.0      0.15   5.5e+02       1      22 [.      35      56 ..      35      60 .. 0.82
   2 ?    6.7   0.0    0.0022       7.7       1      22 [.     127     148 ..     127     152 .. 0.85
   3 ?   -3.1   0.0       2.5   8.8e+03       2      18 ..     174     190 ..     173     194 .. 0.71
   4 ?    2.6   0.0     0.043   1.5e+02       1      20 [.     196     215 ..     196     222 .. 0.81

  Alignments for each domain:
  == domain 1  score: 0.8 bits;  conditional E-value: 0.15
      DUF717  1 aleesDFeeClkfFsqPLpell 22
                +++e  F +C  + s  Lp  l
  KOO21420.1 35 SISEYAFANCSSMTSIALPASL 56
                589999*****99998888765 PP

  == domain 2  score: 6.7 bits;  conditional E-value: 0.0022
      DUF717   1 aleesDFeeClkfFsqPLpell 22 
                 +++es Fe+C  + s  Lp  l
  KOO21420.1 127 SISESAFEDCSSLTSIALPASL 148
                 699**********999888766 PP

  == domain 3  score: -3.1 bits;  conditional E-value: 2.5
      DUF717   2 leesDFeeClkfFsqPL 18 
                 + e  F  C  + s  L
  KOO21420.1 174 IGERAFSGCSSLTSIQL 190
                 66788999988876555 PP

  == domain 4  score: 2.6 bits;  conditional E-value: 0.043
      DUF717   1 aleesDFeeClkfFsqPLpe 20 
                 +l+e  Fe+C  + s  Lp 
  KOO21420.1 196 SLSEYAFEDCSSMTSIALPA 215
                 589999****9998887776 PP

>> Forkhead_N  Forkhead N-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.4   5.1     0.014        52      15      80 ..      17      74 ..       1     108 [. 0.43
   2 ?    9.6   5.2   0.00038       1.3      15      80 ..     108     189 ..      70     202 .. 0.71
   3 ?    5.5   0.1    0.0069        25      15      62 ..     201     261 ..     189     266 .] 0.59

  Alignments for each domain:
  == domain 1  score: 4.4 bits;  conditional E-value: 0.014
                X....XXXXXXXXXXXXXXX.XXXXX.XXXXXXXXXX....XXXXX.XXXXXXXXX.XXXXXXXXXXXXXXX CS
  Forkhead_N 15 n....ysmnsMstyvamnss.qasat.ssanmngyagaaamngmssssmtgmssgyasagsplgmmgmssms 80
                +     sm+s+ ++++++s+ +  a+   ++m++ a +a+++ +++++               g++ ++s++
  KOO21420.1 17 AfdccSSMTSIQLPAGLMSIsE-YAFaNCSSMTSIALPASLTRLGGGAFY-------------GCSLLTSIA 74
                0222334555555555544421.111122333333333333333333333.............333333333 PP

  == domain 2  score: 9.6 bits;  conditional E-value: 0.00038
                 X.....XXXXXXXXXXXXXXXXXXXX..........XXXXXXXXXX....XXXXX.XXXXXXXXX.XXXXXX..XXXXXXXXX CS
  Forkhead_N  15 n.....ysmnsMstyvamnssqasat..........ssanmngyagaaamngmssssmtgmssgyasagspl..gmmgmssms 80 
                        sm+s+ ++++++s++ sa+          + a+  ++ g++a+ g ss++   ++++++s+g+ +  g+++++s+ 
  KOO21420.1 108 RgfsgcSSMTSIQLPAGLTSISESAFedcssltsiaLPASL-TSLGGGAFRGCSSMTSIALPASLTSIGERAfsGCSSLTSIQ 189
                 14555678999999999999988888888777777544444.55666777777777777777777777776666666666554 PP

  == domain 3  score: 5.5 bits;  conditional E-value: 0.0069
                 X....XXXXXXXXXXXXXXXXXXXX..........XXXXXXXXXX....XXXXX.XXXXXXX CS
  Forkhead_N  15 n....ysmnsMstyvamnssqasat..........ssanmngyagaaamngmssssmtgmss 62 
                 +     sm+s+ ++++++s+  + +          +     ++ g+ a++g ss+++  +++
  KOO21420.1 201 AfedcSSMTSIALPAGLMSIGEGVFwgcssltliaL-PACLTSLGGSAFSGCSSMTLIELPA 261
                 14455789*********9994444465544455532.2223445555566666655555555 PP

>> LRR_4  Leucine Rich repeats (2 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.0       2.8     1e+04      10      22 ..      23      33 ..      19      38 .. 0.70
   2 ?   -1.9   0.0       1.5   5.2e+03       8      25 ..      44      59 ..      39      59 .. 0.72
   3 ?    1.1   0.0      0.17   6.1e+02       8      23 ..      90     103 ..      69     107 .. 0.67
   4 ?    1.5   0.0      0.12   4.3e+02      13      24 ..      93     104 ..      84     132 .. 0.59
   5 ?    1.6   0.1      0.11     4e+02       7      18 ..     135     144 ..     110     153 .. 0.59
   6 ?    3.4   0.0     0.031   1.1e+02      12      26 ..     184     198 ..     178     199 .. 0.82
   7 ?   -2.4   0.0       2.1   7.4e+03      22      29 ..     251     258 ..     239     266 .] 0.47

  Alignments for each domain:
  == domain 1  score: -2.8 bits;  conditional E-value: 2.8
                SS---E-S-HHH- CS
       LRR_4 10 nNqltdipllekl 22
                +  +t+i+l+++l
  KOO21420.1 23 S--MTSIQLPAGL 33
                3..7889988876 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 1.5
                --SS---E-S-HHH-TT- CS
       LRR_4  8 LsnNqltdiplleklpnL 25
                +s+  +t+i l+++l+ L
  KOO21420.1 44 CSS--MTSIALPASLTRL 59
                344..8899888888876 PP

  == domain 3  score: 1.1 bits;  conditional E-value: 0.17
                 --SS---E-S-HHH-T CS
       LRR_4   8 LsnNqltdiplleklp 23 
                 +s+  lt+i+l+++l+
  KOO21420.1  90 CSS--LTSIELPASLT 103
                 233..55666555555 PP

  == domain 4  score: 1.5 bits;  conditional E-value: 0.12
                 --E-S-HHH-TT CS
       LRR_4  13 ltdiplleklpn 24 
                 lt+i+l+++l++
  KOO21420.1  93 LTSIELPASLTS 104
                 444444444433 PP

  == domain 5  score: 1.6 bits;  conditional E-value: 0.11
                 E--SS---E-S- CS
       LRR_4   7 dLsnNqltdipl 18 
                 d+s+  lt+i l
  KOO21420.1 135 DCSS--LTSIAL 144
                 2333..444444 PP

  == domain 6  score: 3.4 bits;  conditional E-value: 0.031
                 ---E-S-HHH-TT-- CS
       LRR_4  12 qltdiplleklpnLk 26 
                  lt+i+l+++l++L 
  KOO21420.1 184 SLTSIQLPAGLTSLS 198
                 49**********996 PP

  == domain 7  score: -2.4 bits;  conditional E-value: 2.1
                 -TT--EEE CS
       LRR_4  22 lpnLkeLd 29 
                 + +++ + 
  KOO21420.1 251 CSSMTLIE 258
                 44444333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (266 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       225  (0.0125495); expected 358.6 (0.02)
Passed bias filter:                      143  (0.0079759); expected 358.6 (0.02)
Passed Vit filter:                        12  (0.000669307); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.44u 0.31s 00:00:00.75 Elapsed: 00:00:00.43
# Mc/sec: 1840.23
//
Query:       KOO21421.1  [L=504]
Description: arylsulfatase i [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.7e-34  119.6   0.0    2.4e-34  119.2   0.0    1.2  1  Sulfatase     Sulfatase
  ------ inclusion threshold ------
      0.024   14.2   0.0      0.041   13.5   0.0    1.3  1  Phosphodiest  Type I phosphodiesterase / nucleotide pyrophosp
      0.047   13.6   0.0       0.24   11.3   0.0    2.0  2  DUF4994       Domain of unknown function


Domain annotation for each model (and alignments):
>> Sulfatase  Sulfatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  119.2   0.0   3.9e-38   2.4e-34      58     308 ..       2     288 ..       1     289 [. 0.87

  Alignments for each domain:
  == domain 1  score: 119.2 bits;  conditional E-value: 3.9e-38
                 HSS-HHHHTHSSCCSTTT....HHCTTTS-HHHHHHHHTT-EEEEEEES-SCCSGGGSHHCCTTTSEEEETSSSCHHTCCCCCCCCCECTCCC...... CS
   Sulfatase  58 tgryphnsgvasntevgg....gglpqteatLpellkeaGYntaaigkwhlgwssrqsvyknrgfdrflgfptgsaalkdpekseyngevlrv...... 146
                 t ryp ++g  ++ +  +    g +p ++at++e+lk++GY+t aigkwhlg+ss ++ + +rgfd++ gf  g ++++++e   +  + +++      
  KOO21421.1   2 TARYPFRTG-LQHAPTLVpgstGAIPSDTATIAEVLKKRGYATSAIGKWHLGYSSWKDTPLGRGFDSYAGFLQGGQDYYTHELAIPP-PLNQSgfdlwr 98 
                 666666666.334433335677*********************************999877*******************9955543.44444799*** PP

                 ......TTTTCSHHHHHHHHHHHHHHCCC.TSSEEEEEEE-TTSSSTCTCGGHTCC.GSTTTTCCCCCCH....HHHHHHHHHHHHHHHHHHHHHHHHH CS
   Sulfatase 147 ......ppeggysddrlldealefllarn.dkpfflylatlapHappeapdeyakk.yatffddgseaar....qlleaylnsveyvDdligrvlaaLe 233
                       + +g + +  ++dea+++l a + + p f+yl++ ++Hap+e +++ + +  + + +++++         + + + + ++vD ++g+++ +Le
  KOO21421.1  99 nqtvawDVRGTHTTPFFMDEAARVLDAHDpATPLFVYLSLQEVHAPLEETPDAPSRaACVGAPPLPSPLGpkvtAFRHTLCEMAANVDSFLGDFVSRLE 197
                 *************************77777*****************777766666044555555555448888************************* PP

                 HTTTGGGEEEEEEESSSSCCCG..............HHTTSSSCTTCSSSHHHHBEEEEEEETTTSHC...EEECSEEEGGGHHHHHHHHTT CS
   Sulfatase 234 englldntlvvftSDhgaslee..............sngplrggkganayeggtrvPllvwwpgekap...rvseelvshiDlfptildlag 308
                  +g ++ tl+  t D+g ++++              sn plrggk+ +  egg+r   +v +     +    ++e+l+ h+D+  t+++la 
  KOO21421.1 198 AKGMWNHTLFWLTTDNGGMTYGsaalglppvavgvsSNWPLRGGKT-TLFEGGVRGVSFVSGGLVPVTargTTVEGLMQHVDVPLTMAKLAQ 288
                 **********************************************.*********999987776666889******************996 PP

>> Phosphodiest  Type I phosphodiesterase / nucleotide pyrophosphatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.0   6.9e-06     0.041      89     234 ..      49     215 ..       3     222 .. 0.72

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 6.9e-06
                   GCTTS-HHHHHHHTHTTCEEEESETTTTSEBTTCT.SC.TBHHSBTCT....CSTTS.CHHHHHHHHHHHHHHHCHTHSHHHHHCT.SSESEEEEEE CS
  Phosphodiest  89 wwqgepiwdtaakarglkaaalfwpgsevdystyyylvsetppryled...dfnakv.pledkvdkavlqtwldaafakvvlekel.ekpdlllvyl 180
                   w  g+  w +    rg+ ++a f  g+    ++yy+ ++ +pp+  +     ++++   ++ + ++  ++  + +++a++vl+++   +p +++++l
    KOO21421.1  49 WHLGYSSWKDTPLGRGFDSYAGFLQGG----QDYYTHELAIPPPLNQSgfdLWRNQTvAWDVRGTH-TTP--FFMDEAARVLDAHDpATPLFVYLSL 138
                   444455555555555666666666533....33444566777777766554455555433334443.332..3355556788888889999999999 PP

                   CCCHHHHHHH-TTSHH........................HHHHHHHHHHHHHHHHHHHHHTTGTTTEEEEEEES--- CS
  Phosphodiest 181 eetDtvgHkfGpdspe........................vedalrrvDkaigdLlealderglsaetniilvSDHGm 234
                    e+ +   +  pd p                         + +  ++vD+++gd+++ l+ +g++++t + l+ D G 
    KOO21421.1 139 QEVHAPLEET-PDAPSraacvgapplpsplgpkvtafrhtLCEMAANVDSFLGDFVSRLEAKGMWNHTLFWLTTDNGG 215
                   9999999999.986666799999999999999999999999999******************************9885 PP

>> DUF4994  Domain of unknown function
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.0      0.27   1.6e+03      40      59 ..     353     372 ..     337     379 .. 0.74
   2 ?   11.3   0.0   4.1e-05      0.24      70      96 ..     414     440 ..     411     442 .. 0.93

  Alignments for each domain:
  == domain 1  score: -1.0 bits;  conditional E-value: 0.27
     DUF4994  40 kkkWkyiePskgpalikltk 59 
                 ++ Wk+ie + +p     t 
  KOO21421.1 353 DGLWKLIEANWQPPQCPNTT 372
                 466*****999887766655 PP

  == domain 2  score: 11.3 bits;  conditional E-value: 4.1e-05
     DUF4994  70 Lydlkkdegekenvaekhpekvkelke 96 
                 L+dl +d+ e  n+a+++pe+v+ l++
  KOO21421.1 414 LFDLVSDPNEAVNMASSRPEIVTSLRA 440
                 9**********************9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (504 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       270  (0.0150594); expected 358.6 (0.02)
Passed bias filter:                      244  (0.0136092); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.50u 0.24s 00:00:00.74 Elapsed: 00:00:00.41
# Mc/sec: 3697.05
//
Query:       KOO21422.1  [L=191]
Description: hypothetical protein Ctob_000371 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (191 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       338  (0.0188521); expected 358.6 (0.02)
Passed bias filter:                      142  (0.00792013); expected 358.6 (0.02)
Passed Vit filter:                        12  (0.000669307); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.26s 00:00:00.64 Elapsed: 00:00:00.41
# Mc/sec: 1412.58
//
Query:       KOO21423.1  [L=258]
Description: hypothetical protein Ctob_000375 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (258 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       316  (0.0176251); expected 358.6 (0.02)
Passed bias filter:                      281  (0.0156729); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.40u 0.24s 00:00:00.64 Elapsed: 00:00:00.40
# Mc/sec: 1957.91
//
Query:       KOO21424.1  [L=250]
Description: hypothetical protein Ctob_000369 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (250 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       369  (0.0205812); expected 358.6 (0.02)
Passed bias filter:                      334  (0.018629); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.43u 0.25s 00:00:00.68 Elapsed: 00:00:00.41
# Mc/sec: 1832.29
//
Query:       KOO21425.1  [L=631]
Description: origin recognition complex subunit 1 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.2e-14   54.9   0.0    2.8e-14   53.6   0.0    1.6  1  AAA         ATPase family associated with various cellular ac
    2.4e-14   53.2   0.0    3.8e-14   52.6   0.0    1.3  1  BAH         BAH domain
    5.3e-12   46.4   1.7    6.4e-12   46.2   0.2    1.9  2  AAA_16      AAA ATPase domain
    7.1e-10   39.3   0.0    1.7e-09   38.1   0.0    1.6  1  AAA_22      AAA domain
    4.5e-07   29.9   0.2    8.7e-07   29.0   0.2    1.4  1  AAA_lid_10  AAA lid domain
     0.0008   19.4   0.0     0.0017   18.3   0.0    1.5  1  NACHT       NACHT domain
     0.0011   19.3   0.1     0.0047   17.3   0.1    2.0  1  AAA_19      AAA domain
     0.0054   16.7   0.0       0.01   15.8   0.0    1.4  1  ATPase_2    ATPase domain predominantly from Archaea
  ------ inclusion threshold ------
       0.01   15.6   0.1      0.028   14.2   0.1    1.7  1  AAA_30      AAA domain
      0.057   12.7   0.0       0.13   11.5   0.0    1.6  2  DUF2075     Uncharacterized conserved protein (DUF2075)
       0.12   11.9   0.0       0.21   11.1   0.0    1.3  1  AAA_7       P-loop containing dynein motor region
       0.12   11.1   0.0       0.19   10.5   0.0    1.2  1  AAA_32      AAA domain
       0.15   11.9   0.0       0.25   11.1   0.0    1.3  1  AAA_11      AAA domain
       0.18   11.7   0.1       0.39   10.6   0.1    1.8  1  NTPase_1    NTPase
       0.18   11.7   0.0       0.28   11.1   0.0    1.3  1  Rad17       Rad17 P-loop domain


Domain annotation for each model (and alignments):
>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.6   0.0   2.4e-17   2.8e-14       2     131 ..     264     417 ..     263     418 .. 0.83

  Alignments for each domain:
  == domain 1  score: 53.6 bits;  conditional E-value: 2.4e-17
                 EEESSTTSSHHHHHHHHHHHH......THEEEEEETTTCSSS..............................STTHHHHHHHHHHHHHHHTS.TSEEEE CS
         AAA   2 llyGppGtGKTllakavakel......gvefleisgsellsk..............................yvgesekkirelfkeakeka.kpsilf 63 
                 +++G+pGtGKT+++++  +el      +++ + ++g+++                                     s  ++++ +++ ++ a +++il+
  KOO21425.1 264 YISGTPGTGKTATVHQALRELtadrtlQFRSIFVNGMKMSTPfqvyallwegltgqavkpsralellerrfaAPTTSRLSFSKAVQQRRKGAsEKVILI 362
                 789*****************744443356677777777775588999999999999999999999999887655666666777777777777777**** PP

                 EETGGGHHHHHTTCCCHHHHHHHHHHHHHHHHTTTSSSTEEEEEEESSGGGSTHHHHSTTSSEEEETT CS
         AAA  64 iDEidalaksrsgseseeeervvnqLlteldgvkkkeskvivigatnrpdkldpallrgRfdrkieie 131
                 +DE+d l++sr           +++L++ +++ ++ ++ ++v+g++n++d +++ l   R++++++i+
  KOO21425.1 363 LDELDYLVTSR-----------QSVLYNLFEWSTRANAALVVVGISNTMDLPERLLP--RVESRLNIR 417
                 ***********...........****************************9999999..777777665 PP

>> BAH  BAH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.6   0.0   3.2e-17   3.8e-14       2     120 ..      38     156 ..      37     158 .. 0.93

  Alignments for each domain:
  == domain 1  score: 52.6 bits;  conditional E-value: 3.2e-17
                 EEETTGEEEEEETTSTTEEEEEEEEEEEEETTSTCEEEEEEEEEEECGGGSTTTTHCCCT..TEEEEEEEEEEEEGGGEEEEEEEEEHHHHCTECCHCH CS
         BAH   2 tyavGdfVyfddtstdepyqirrIeeLkenakneeaeatvlvdwflrpeetksalklrqk..rElfltrqseilplaairgkcrVvllsdleeaqnylp 98 
                 t++v+d V++  +      q++rIe L+e+       ++ +++w+++peet   ++l+ +  rElf t + ++  +++i  +c+V++   ++ +  ++ 
  KOO21425.1  38 TFHVNDTVIVRVDG-FGSDQVARIEALWEDVRGA---KWWEGRWYYTPEET-TCGRLVGHdpRELFETVHVDENLVDTIDCHCTVMEWDAYQRWLDQPA 131
                 899**********9.9999***************...**************.8999998888**************************99999987776 PP

                 ...HCSTTEEEEEEEEETTTTEEEE CS
         BAH  99 ...kklddtFycslvydptaktfkk 120
                     ++++tF c+ +y    + f++
  KOO21425.1 132 eddDEEETTFACRAMYHAGSGEFVP 156
                 7888899*********999999987 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.2   0.2   5.4e-15   6.4e-12       2     164 ..     236     386 ..     235     394 .. 0.80
   2 ?   -2.0   0.1       3.5   4.2e+03     141     141 ..     510     510 ..     451     601 .. 0.61

  Alignments for each domain:
  == domain 1  score: 46.2 bits;  conditional E-value: 5.4e-15
      AAA_16   2 lvGReeeleqLlsale.rvrsgrp.elvllsGesGvGKsslvrellralekdggiflrgkcdql.esaipysalaqalareellrqlldeaesaeleaw 97 
                  ++Re+e++++ ++l+ +v +g   +++++sG +G+GK++ v ++lr+l++d+ + +r  ++   ++++p++++a +   e+l  q   ++++ el + 
  KOO21425.1 236 MPCREKERAEVIATLRaAVLEGALgGSLYISGTPGTGKTATVHQALRELTADRTLQFRSIFVNGmKMSTPFQVYALLW--EGLTGQAVKPSRALELLER 332
                 589********9999978888888****************************63333333333358889995555554..6999999999999888888 PP

      AAA_16  98 rekleealaavpelagaeasrllellkrllallsrderplvlvlDdlqwadeaslqllaaLlrlles 164
                 r + +++ +           ++  ++++  + +s+  + ++l+lD+l+ + ++ +++l++L++ +++
  KOO21425.1 333 RFAAPTTSR----------LSFSKAVQQRRKGASE--K-VILILDELDYLVTSRQSVLYNLFEWSTR 386
                 888888777..........8899999888877775..5.*************99999****987666 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 3.5
      AAA_16 141 l 141
                 +
  KOO21425.1 510 I 510
                 0 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.1   0.0   1.4e-12   1.7e-09       6     130 ..     261     396 ..     258     402 .. 0.84

  Alignments for each domain:
  == domain 1  score: 38.1 bits;  conditional E-value: 1.4e-12
      AAA_22   6 gilvvtGesGtGKTtllrrlleqldeeakaeeerpevvfvtlpsstsskdllrellralglelka..............erlsseellealeqalrara 90 
                 g+l++ G +GtGKT ++ + l++l+++      + + +fv+  + +++ +++  l + l+ ++ +              ++ s+  + +a++q  + ++
  KOO21425.1 261 GSLYISGTPGTGKTATVHQALRELTADRT---LQFRSIFVNGMKMSTPFQVYALLWEGLTGQAVKpsralellerrfaaPTTSRLSFSKAVQQRRKGAS 356
                 899*********************75544...599999********99999999999999999999999********6333333333366666666666 PP

      AAA_22  91 vielliiDEaqhlr..seealeeLrsllnlsrkgvqliLvGt 130
                  +++li+DE ++l   ++ +l +L +++   r + +l++vG 
  KOO21425.1 357 EKVILILDELDYLVtsRQSVLYNLFEWST--RANAALVVVGI 396
                 69**********98755999999999999..999**999996 PP

>> AAA_lid_10  AAA lid domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.0   0.2   7.3e-10   8.7e-07      50      81 ..     450     481 ..     444     492 .. 0.90

  Alignments for each domain:
  == domain 1  score: 29.0 bits;  conditional E-value: 7.3e-10
                 -HHHHHHHHHHT-TTTTHHHHHHHHHHHHHHH CS
  AAA_lid_10  50 ieiasrkvAsvsgdarrAlkiCkrAvEiaekd 81 
                 +e+ +rkvAsv gd rrAl +C+ A+ iae++
  KOO21425.1 450 LELCARKVASVTGDVRRALEVCRLATQIAERE 481
                 6999*************************987 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.3   0.0   1.4e-06    0.0017       4     125 ..     264     393 ..     262     425 .. 0.76

  Alignments for each domain:
  == domain 1  score: 18.3 bits;  conditional E-value: 1.4e-06
                 EEEC-TTTCHHHHHHHHHHHHCTS-SCCCC-SEEEEEETTTTTTS-...-HCHHHCCCCTS--SSS-C..................CHHHHCCSCCCEE CS
       NACHT   4 ilqGeaGsGKTtLlqklalawaegklpqgafklvFflslrelsrsgnarsladllfsqlpepaapvse..................vwavllelperlL 84 
                  + G +G GKT+ +++  +++ +++  q  f+ +F+  +++ +  +    l + l+ q  +p+++ +                   v + +    e++ 
  KOO21425.1 264 YISGTPGTGKTATVHQALRELTADRTLQ--FRSIFVNGMKMSTPFQVYALLWEGLTGQAVKPSRALELlerrfaapttsrlsfskaVQQRRKGASEKVI 360
                 689*********************9888..999999999999998777667777777777776666557788888888888766666666666677788 PP

                 EEEE-STT-SS-TCH.........HHHHHCTTTTT--EEEE CS
       NACHT  85 lilDglDelvtdlgqkekqpvrtlLselirkkllpeaslll 125
                 lilD lD+lvt  +         +L +l++ +   +a l++
  KOO21425.1 361 LILDELDYLVTSRQS--------VLYNLFEWSTRANAALVV 393
                 ***********7777........777777664444444444 PP

>> AAA_19  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   0.1   3.9e-06    0.0047       7      57 ..     257     323 ..     251     399 .. 0.55

  Alignments for each domain:
  == domain 1  score: 17.3 bits;  conditional E-value: 3.9e-06
      AAA_19   7 alkekvllvtaGpGtGKTrvlkhivallvelggvkp................eeillvaftgrAake 57 
                  +  + l + + pGtGKT ++++++++l + ++++                   +l   +tg+A+k 
  KOO21425.1 257 GALGGSLYISGTPGTGKTATVHQALRELTADRTLQFrsifvngmkmstpfqvYALLWEGLTGQAVKP 323
                 55677899*********************99999885556655555555333333333455555554 PP

>> ATPase_2  ATPase domain predominantly from Archaea
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.0   8.5e-06      0.01      22     163 ..     262     394 ..     242     406 .. 0.71

  Alignments for each domain:
  == domain 1  score: 15.8 bits;  conditional E-value: 8.5e-06
    ATPase_2  22 iyfiYGpegsGKtaLlkeiienl...edkdkyviyyialreesiskldefieeeeekkklekalgiavpkaeleeilkeksklvfkaielllekikkkg 117
                  ++i G  g GKta + +++ +l   + ++++ i+++ ++ +   ++             e  +g+av+  ++ e+l+++ +  + +  ++ +++++++
  KOO21425.1 262 SLYISGTPGTGKTATVHQALRELtadRTLQFRSIFVNGMKMSTPFQVYAL--------LWEGLTGQAVKPSRALELLERRFAAPTTSRLSFSKAVQQRR 352
                 578999*************9999433445568888888887777777766........34455566666666666666666666777777777777777 PP

    ATPase_2 118 kk....iiiiiDelqklidlglngaellvkeLlnliesltkekhlcvvic 163
                 k     +i+i+Del +l+  +++  ++++++L++   +     ++++v++
  KOO21425.1 353 KGasekVILILDELDYLV--TSR--QSVLYNLFEWSTR----ANAALVVV 394
                 767778************..655..8999988886554....44444444 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   0.1   2.3e-05     0.028      21     123 ..     263     395 ..     251     397 .. 0.73

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 2.3e-05
      AAA_30  21 avltGpAGtGKttalkal.reaweaag........................grviglAptgkaAkvLaeelgieastiakllkrlk...grarlepgtl 91 
                   + G +GtGKt ++ ++ re+ +++                         + + g A +   A +L  e  ++a t+ +l  + +   +r+  +++ +
  KOO21425.1 263 LYISGTPGTGKTATVHQAlRELTADRTlqfrsifvngmkmstpfqvyallwEGLTGQAVKPSRALELL-ERRFAAPTTSRLSFSKAvqqRRKGASEKVI 360
                 5789********99887747777777789999999999999997775555444445555444444444.346789999988887778875566777799 PP

      AAA_30  92 livDEagmv...dtkqlaallkaaekagakvilvG 123
                 li DE   +    ++ l +l++  ++a+a +++vG
  KOO21425.1 361 LILDELDYLvtsRQSVLYNLFEWSTRANAALVVVG 395
                 999**998855455667888888888899999988 PP

>> DUF2075  Uncharacterized conserved protein (DUF2075)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   0.00011      0.13       5      45 ..     264     303 ..     262     397 .. 0.59
   2 ?   -3.8   0.0       4.9   5.9e+03      73     101 ..     489     517 ..     473     534 .. 0.73

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.00011
     DUF2075   5 lVtGvaGtGKtvvllnllaeleddeeertavylsvNhplvl 45 
                  ++G +GtGKt    ++l el + ++  +   + vN+  + 
  KOO21425.1 264 YISGTPGTGKTATVHQALREL-TADRTLQFRSIFVNGMKMS 303
                 599******************.6666666666667776666 PP

  == domain 2  score: -3.8 bits;  conditional E-value: 4.9
     DUF2075  73 nlsefkkaeekkeepkedvvivDEAhrll 101
                 ++se+ k +++++  +++++ + EAh+ l
  KOO21425.1 489 RASEGGKGAARQAPTHVTIAHIEEAHKQL 517
                 44545666777778888888899999865 PP

>> AAA_7  P-loop containing dynein motor region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   0.00018      0.21      37      65 ..     264     292 ..     258     316 .. 0.73

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00018
       AAA_7  37 llvGptGtGKtviikdllkkldkekylsl 65 
                  + G+ GtGKt+++++ l++l  +++l  
  KOO21425.1 264 YISGTPGTGKTATVHQALRELTADRTLQF 292
                 678*****************996654433 PP

>> AAA_32  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.0   0.00016      0.19      32      71 ..     262     301 ..     240     311 .. 0.85

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00016
      AAA_32  32 NifvlGesgtGrttlvkrlleeiakkeptpdDwcYvnnfd 71 
                  ++++G +gtG+t +v+++l+e ++++  +   ++vn ++
  KOO21425.1 262 SLYISGTPGTGKTATVHQALRELTADRTLQFRSIFVNGMK 301
                 59***********************999988888888765 PP

>> AAA_11  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   0.00021      0.25      20      43 ..     263     286 ..     247     354 .. 0.81

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00021
      AAA_11  20 tliqGPPGtgKTktivellsqlls 43 
                   i+G PGtgKT t+ + l++l+ 
  KOO21425.1 263 LYISGTPGTGKTATVHQALRELTA 286
                 479****************99953 PP

>> NTPase_1  NTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.1   0.00033      0.39       2      26 ..     263     287 ..     262     434 .. 0.75

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00033
                 EEEE--TTSSHHHHHHHHHHHH... CS
    NTPase_1   2 vfiTGppGvGKtTlvkkvlellkss 26 
                 ++i+G pG+GKt  v+++l++l  +
  KOO21425.1 263 LYISGTPGTGKTATVHQALRELTAD 287
                 689****************999644 PP

>> Rad17  Rad17 P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   0.00024      0.28      29      89 ..     244     308 ..     233     403 .. 0.76

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00024
       Rad17  29 eevkewlkadvLesrkkriLLisGPsGCgkstvv....kvLskelgiklre.wlnpvslkepdnqk 89 
                  ev   l+a vLe +    L isG +G gk+ +v    ++L+   + ++r  ++n+++  ++++q+
  KOO21425.1 244 AEVIATLRAAVLEGALGGSLYISGTPGTGKTATVhqalRELTADRTLQFRSiFVNGMK-MSTPFQV 308
                 5677899********999*************987211145666666777754689999.6777776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (631 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       550  (0.0306766); expected 358.6 (0.02)
Passed bias filter:                      458  (0.0255452); expected 358.6 (0.02)
Passed Vit filter:                        68  (0.00379274); expected 17.9 (0.001)
Passed Fwd filter:                        15  (0.000836633); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              15  [number of targets reported over threshold]
# CPU time: 0.65u 0.29s 00:00:00.94 Elapsed: 00:00:00.47
# Mc/sec: 4073.28
//
Query:       KOO21426.1  [L=151]
Description: hypothetical protein Ctob_000362 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (151 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1089  (0.0607396); expected 358.6 (0.02)
Passed bias filter:                      220  (0.0122706); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.47u 0.23s 00:00:00.70 Elapsed: 00:00:00.41
# Mc/sec: 1117.70
//
Query:       KOO21427.1  [L=233]
Description: antibiotic biosynthesis monooxygenase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.4e-16   58.2   0.2    5.2e-07   29.7   0.1    2.2  2  ABM       Antibiotic biosynthesis monooxygenase
  ------ inclusion threshold ------
       0.11   13.5   0.0       0.26   12.3   0.0    1.6  2  MucBP     MucBP domain


Domain annotation for each model (and alignments):
>> ABM  Antibiotic biosynthesis monooxygenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.7   0.1   5.7e-11   5.2e-07       8      75 ..      18      85 ..      12      87 .. 0.95
   2 !   26.5   0.0   5.6e-10     5e-06       3      76 ..     132     206 ..     130     207 .. 0.94

  Alignments for each domain:
  == domain 1  score: 29.7 bits;  conditional E-value: 5.7e-11
                EEESTTGHHHHHHHHHHHHHHHHHTSTTEEEEEEEEEETSTTEEEEEEEESSHHHHHHHHTSHHHHHH CS
         ABM  8 irvkpgqaeafldafaeavesllaeepGclgyellrstedpdevvvieeWeseaaleahlksphfkaa 75
                +rvkp+++++fl+  ++++e++l +ep    y + +++++ +++ ++e++  ++ +eah+k+phf ++
  KOO21427.1 18 LRVKPERRDEFLRCIRANQEGTLTSEPLAVTYVYGEDEKESNTWRFFEQYLGREGFEAHRKTPHFADW 85
                79********************9******************************************987 PP

  == domain 2  score: 26.5 bits;  conditional E-value: 5.6e-10
                 EEEEEEEESTTGHHHHHHHHHHHHHHHHHTSTTEEEEEEEEEETSTTEEEEEEEESS.HHHHHHHHTSHHHHHHH CS
         ABM   3 iviaeirvkpgqaeafldafaeavesllaeepGclgyellrstedpdevvvieeWes.eaaleahlksphfkaah 76 
                 +++++++vkp+++eafl a+++ +++ l +ep   +y + ++te p+ + ++e ++  ++ + +h ++ph+ ++ 
  KOO21427.1 132 CLDVQLSVKPDSREAFLNALRSDQRGALTSEPLAVSYLFGEDTERPNVFHMFEAYAGgREGFAQHSQTPHYADWA 206
                 678999*******************9999****************************7777**********9986 PP

>> MucBP  MucBP domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   2.9e-05      0.26      45      62 ..      34      51 ..      20      52 .. 0.87
   2 ?   -3.4   0.0         2   1.8e+04      46      60 ..     154     168 ..     148     169 .. 0.76

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 2.9e-05
       MucBP 45 gpengtfteedqtVtyvY 62
                ++++gt t+e+  VtyvY
  KOO21427.1 34 ANQEGTLTSEPLAVTYVY 51
                5899************** PP

  == domain 2  score: -3.4 bits;  conditional E-value: 2
       MucBP  46 pengtfteedqtVty 60 
                 ++ g  t+e+  V y
  KOO21427.1 154 DQRGALTSEPLAVSY 168
                 556888999998877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (233 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       279  (0.0155614); expected 358.6 (0.02)
Passed bias filter:                      268  (0.0149478); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.42u 0.24s 00:00:00.65 Elapsed: 00:00:00.41
# Mc/sec: 1698.99
//
Query:       KOO21428.1  [L=318]
Description: hypothetical protein Ctob_000381 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.1e-08   33.1   0.0    6.4e-08   32.5   0.0    1.2  1  CRAL_TRIO  CRAL/TRIO domain


Domain annotation for each model (and alignments):
>> CRAL_TRIO  CRAL/TRIO domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.5   0.0   3.6e-12   6.4e-08      16     143 ..     151     284 ..     142     291 .. 0.84

  Alignments for each domain:
  == domain 1  score: 32.5 bits;  conditional E-value: 3.6e-12
   CRAL_TRIO  16 kegrpvlylrlgrfdpk....klsleelvralvlvlerllkelee....dgqvegvtvviDlkglslskmlwkp.isllkkilkilqdnyperlgkili 105
                   g  v+++r++ +d k    k+s+e+l  ++++v e+  + ++     +g+ ++v +  D++g++  k ++    + l   +k +++ yp + g   i
  KOO21428.1 151 AAGDLVYVIRASAIDDKemmsKVSVEQLTDFFLYVKEVHSLVVNArserTGRFCQVMFANDITGTR--KAPDPLfAKALTASSKSYEKLYPSMAGPTMI 247
                 56889************999999999***********98875555755566666666666777777..77766778899******************** PP

   CRAL_TRIO 106 vnaPklfkfafklvkpfldektreKikfvspsnteatl 143
                 +n+P++ ++++ l+kp+ ++ ++ ++kf s     a+l
  KOO21428.1 248 LNLPFILQAFVGLFKPLFPKTVQARLKFDSAPFL-AKL 284
                 ****************************987665.455 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (318 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       672  (0.0374812); expected 358.6 (0.02)
Passed bias filter:                      520  (0.0290033); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.24s 00:00:00.72 Elapsed: 00:00:00.41
# Mc/sec: 2306.85
//
Query:       KOO21429.1  [L=670]
Description: hypothetical protein Ctob_000376 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
        1.9    8.8   9.0       0.41   11.0   5.0    2.0  2  DUF737    Protein of unknown function (DUF737)


Domain annotation for each model (and alignments):
>> DUF737  Protein of unknown function (DUF737)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   5.0   2.3e-05      0.41      66     143 ..     360     468 ..     223     473 .. 0.68
   2 ?   -1.8   0.1      0.18   3.3e+03     107     127 ..     574     595 ..     484     604 .. 0.53

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 2.3e-05
      DUF737  66 s......................sasssssqakveeeelrkkikeelqkrleeeqakaea.........vqeelakllerEreaaqeelteailrerls 133
                                           +  +q+  +e +  k ++ el  +  e qa  ea           ee ++l+e+E eaa+e  + + + +r +
  KOO21429.1 360 AgedisagevpkaaegalpadvtALVTALKQQLARERARAKLAEGELWTQQSELQAAVEAlegarrreaGLEERQRLVEAEAEAAEERAALSTALGRRE 458
                 02233333333333444444443222333444444444444455566666666666666644444444444589*************999999999999 PP

      DUF737 134 tedErlkaql 143
                 ++dE ++a++
  KOO21429.1 459 AHDEAERARR 468
                 9999999875 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 0.18
      DUF737 107 elakll.erEreaaqeelteai 127
                 e++ l  +rE +a+q++l ea+
  KOO21429.1 574 EVEALKrRREHAARQDQLLEAL 595
                 2222221456666666666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (670 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1087  (0.060628); expected 358.6 (0.02)
Passed bias filter:                      422  (0.0235373); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.62u 0.26s 00:00:00.88 Elapsed: 00:00:00.42
# Mc/sec: 4788.40
//
Query:       KOO21430.1  [L=481]
Description: serine threonine-protein phosphatase 6 regulatory ankyrin repeat subunit c-like protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    8.4e-37  125.6  11.0    7.4e-13   48.9   0.1    3.5  4  Ank_2        Ankyrin repeats (3 copies)
    4.8e-18   65.3   0.6    2.5e-06   27.9   0.0    4.1  4  Ank_4        Ankyrin repeats (many copies)
    2.1e-15   56.6   6.3    2.9e-05   24.2   0.2    4.6  4  Ank_5        Ankyrin repeats (many copies)
      2e-14   53.3  13.3    0.00062   20.1   0.1    5.7  5  Ank          Ankyrin repeat
    6.1e-11   41.5   4.4        0.2   12.3   0.0    5.6  5  Ank_3        Ankyrin repeat
    8.4e-11   41.6   8.3    1.6e-10   40.7   8.3    1.5  1  zf-C3HC4_3   Zinc finger, C3HC4 type (RING finger)
     0.0017   18.2  10.3     0.0031   17.3  10.3    1.4  1  Prok-RING_4  Prokaryotic RING finger family 4
  ------ inclusion threshold ------
      0.066   13.6  10.8       0.13   12.6  10.8    1.6  1  zf-RING_2    Ring finger domain
       0.95    9.5  10.7        2.7    8.0  10.8    1.8  1  zf-RING_5    zinc-RING finger domain
        1.6    9.1   6.7         24    5.4   0.3    3.9  3  GST_N_5      Glutathione S-transferase, N-terminal domain


Domain annotation for each model (and alignments):
>> Ank_2  Ankyrin repeats (3 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.2   0.1   7.6e-07    0.0014      45      80 ..      33      68 ..      12      71 .. 0.71
   2 !   44.0   0.6   1.4e-14   2.5e-11       8      76 ..      55     130 ..      54     140 .. 0.84
   3 !   48.9   0.1   4.1e-16   7.4e-13       8      82 ..      88     171 ..      86     172 .. 0.85
   4 !   41.7   0.1   7.3e-14   1.3e-10       8      73 ..     121     195 ..     119     205 .. 0.84

  Alignments for each domain:
  == domain 1  score: 19.2 bits;  conditional E-value: 7.6e-07
       Ank_2 45 LlehadndgrtpLhyAarsghleivklLlekgadin 80
                L++ ad++g tpL++A+++g++ +++lLl   a +n
  KOO21430.1 33 LIDSADCNGITPLIAACSKGYYGCAQLLLAAHAAVN 68
                455588999999999999999999999996556655 PP

  == domain 2  score: 44.0 bits;  conditional E-value: 1.4e-14
       Ank_2   8 gnlelvklLl.egadpn.k..ngktaLhyAakngnleivklLle.h.....adndgrtpLhyAarsghleivklLlekg 76 
                 g   + +lLl ++a +n    ng t+L++A+++g   +v+lLl+ h     ad+ g tpL++A+  g   +vklLl   
  KOO21430.1  55 G---CAQLLLaAHAAVNqAacNGATPLYVACSKGEGGCVQLLLAaHavvdqADRIGATPLIAACVAGDGGCVKLLLAAH 130
                 4...88999999999997257*************889******954886667799***********999*******543 PP

  == domain 3  score: 48.9 bits;  conditional E-value: 4.1e-16
       Ank_2   8 gnlelvklLl.egadpn..k.ngktaLhyAakngnleivklLle.h.......adndgrtpLhyAarsghleivklLlekgadinlk 82 
                 g   +v+lLl ++a ++  +  g t+L++A+ +g+  +vklLl+ h       ++ +g tpL++A+  g+ +ivklL+  ga i+l+
  KOO21430.1  88 G---CVQLLLaAHAVVDqaDrIGATPLIAACVAGDGGCVKLLLAaHaavdkagINVNGVTPLIAACDAGSMDIVKLLVHAGARIDLR 171
                 6...9*****8776677543799***********99*******85478666666699*********************88*999876 PP

  == domain 4  score: 41.7 bits;  conditional E-value: 7.3e-14
       Ank_2   8 gnlelvklLl.egadpn...k..ngktaLhyAakngnleivklLleh...ad...ndgrtpLhyAarsghleivklLl 73 
                 g   +vklLl ++a ++      ng t+L++A+ +g+ +ivklL+ +   +d   +dg t+L +A  +gh+ i+++L 
  KOO21430.1 121 G---CVKLLLaAHAAVDkagInvNGVTPLIAACDAGSMDIVKLLVHAgarIDlrtYDGLTALDLAEAQGHPAIARFLR 195
                 5...9*****9888877644169**********************647773355799*******************97 PP

>> Ank_4  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.6   0.0   2.1e-05     0.038      34      55 .]      40      61 ..      12      61 .. 0.91
   2 !    7.5   0.0    0.0035       6.3      34      55 .]      73      94 ..      66      94 .. 0.93
   3 !   18.2   0.0   1.5e-06    0.0027       3      55 .]      76     127 ..      74     127 .. 0.94
   4 !   27.9   0.0   1.4e-09   2.5e-06       3      54 ..     144     194 ..     142     195 .. 0.96

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 2.1e-05
       Ank_4 34 sGetalhiAakrgnveilklLl 55
                +G t+l+ A+++g++ +++lLl
  KOO21430.1 40 NGITPLIAACSKGYYGCAQLLL 61
                799******************8 PP

  == domain 2  score: 7.5 bits;  conditional E-value: 0.0035
       Ank_4 34 sGetalhiAakrgnveilklLl 55
                +G t+l+ A+++g   +++lLl
  KOO21430.1 73 NGATPLYVACSKGEGGCVQLLL 94
                699*****************98 PP

  == domain 3  score: 18.2 bits;  conditional E-value: 1.5e-06
       Ank_4   3 taLhyaaisgrlelvrlLlekgadinaqdnrsGetalhiAakrgnveilklLl 55 
                 t+L  a+++g   +v+lLl+  a ++   +r G t+l+ A+  g+  ++klLl
  KOO21430.1  76 TPLYVACSKGEGGCVQLLLAAHAVVDQA-DRIGATPLIAACVAGDGGCVKLLL 127
                 8999***************999888886.***********************8 PP

  == domain 4  score: 27.9 bits;  conditional E-value: 1.4e-09
       Ank_4   3 taLhyaaisgrlelvrlLlekgadinaqdnrsGetalhiAakrgnveilklL 54 
                 t+L +a+ +g +++v+lL+  ga i+ +   +G+tal+ A   g++ i+++L
  KOO21430.1 144 TPLIAACDAGSMDIVKLLVHAGARIDLR-TYDGLTALDLAEAQGHPAIARFL 194
                 89*****************99*******.**********************9 PP

>> Ank_5  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.7   0.2   9.2e-07    0.0016       6      56 .]      36      81 ..      33      81 .. 0.90
   2 !   15.9   0.1   6.9e-06     0.012      15      54 ..      73     112 ..      64     114 .. 0.88
   3 !    9.3   0.2   0.00082       1.5       2      40 ..      94     131 ..      93     137 .. 0.85
   4 !   24.2   0.2   1.6e-08   2.9e-05      13      56 .]     139     182 ..     135     182 .. 0.92

  Alignments for each domain:
  == domain 1  score: 18.7 bits;  conditional E-value: 9.2e-07
       Ank_5  6 padvnrldgggntpLhvAakygaadvvrlLlargadlnltdsrGltaldlA 56
                +ad+n       tpL+ A+++g+  +++lLla +a+ n+   +G t+l +A
  KOO21430.1 36 SADCNGI-----TPLIAACSKGYYGCAQLLLAAHAAVNQAACNGATPLYVA 81
                6888888.....***********************9999998999999887 PP

  == domain 2  score: 15.9 bits;  conditional E-value: 6.9e-06
       Ank_5  15 ggntpLhvAakygaadvvrlLlargadlnltdsrGltald 54 
                 +g tpL vA+++g   +v+lLla +a  ++ d  G t+l 
  KOO21430.1  73 NGATPLYVACSKGEGGCVQLLLAAHAVVDQADRIGATPLI 112
                 567**********************************995 PP

  == domain 3  score: 9.3 bits;  conditional E-value: 0.00082
       Ank_5   2 lehgpadvnrldgggntpLhvAakygaadvvrlLlarga 40 
                 l++  a v+  d+ g tpL+ A+ +g   +v+lLla +a
  KOO21430.1  94 LAAH-AVVDQADRIGATPLIAACVAGDGGCVKLLLAAHA 131
                 5665.8899999***********************5554 PP

  == domain 4  score: 24.2 bits;  conditional E-value: 1.6e-08
       Ank_5  13 dgggntpLhvAakygaadvvrlLlargadlnltdsrGltaldlA 56 
                 + +g+tpL+ A+ +g+ d+v+lL+  ga ++l++ +GltaldlA
  KOO21430.1 139 NVNGVTPLIAACDAGSMDIVKLLVHAGARIDLRTYDGLTALDLA 182
                 45789*******************9999999999999******9 PP

>> Ank  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.7   0.5   7.7e-05      0.14       1      28 [.      40      68 ..      40      72 .. 0.78
   2 !   12.5   0.0     9e-05      0.16       1      24 [.      73      97 ..      73     105 .. 0.80
   3 !    9.1   0.4     0.001       1.8       2      23 ..     107     130 ..     106     137 .. 0.82
   4 !   20.1   0.1   3.4e-07   0.00062       1      31 [.     141     172 ..     141     173 .. 0.90
   5 ?    3.9   0.0     0.046        83       1      22 [.     174     195 ..     174     207 .. 0.76

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 7.7e-05
                TSBBHHHHHH...HHTTHHHHHHHH..TTTSTT CS
         Ank  1 dGnTPLHlAa...tngkkriiklLL..hGAnln 28
                +G TPL  A+   ++g   +++lLL  h A +n
  KOO21430.1 40 NGITPLIAACskgYYG---CAQLLLaaHAA-VN 68
                7*********666556...******75544.66 PP

  == domain 2  score: 12.5 bits;  conditional E-value: 9e-05
                TSBBHHHHHH...HHTTHHHHHHHH.TT CS
         Ank  1 dGnTPLHlAa...tngkkriiklLL.hG 24
                +G TPL +A+    +g   +++lLL   
  KOO21430.1 73 NGATPLYVACskgEGG---CVQLLLaAH 97
                799*******999889...******633 PP

  == domain 3  score: 9.1 bits;  conditional E-value: 0.001
                 SBBHHHHHH...HHTTHHHHHHHH..T CS
         Ank   2 GnTPLHlAa...tngkkriiklLL..h 23 
                 G TPL  A+    +g   ++klLL  h
  KOO21430.1 107 GATPLIAACvagDGG---CVKLLLaaH 130
                 88*******999999...******544 PP

  == domain 4  score: 20.1 bits;  conditional E-value: 3.4e-07
                 TSBBHHHHHHHHTTHHHHHHHHT.TTSTTCBT CS
         Ank   1 dGnTPLHlAatngkkriiklLLh.GAnlnald 31 
                 +G TPL  A+  g+ +i+klL+h GA +++++
  KOO21430.1 141 NGVTPLIAACDAGSMDIVKLLVHaGARIDLRT 172
                 7*********99********997699888776 PP

  == domain 5  score: 3.9 bits;  conditional E-value: 0.046
                 TSBBHHHHHHHHTTHHHHHHHH CS
         Ank   1 dGnTPLHlAatngkkriiklLL 22 
                 dG T+L lA   g++ i+++L 
  KOO21430.1 174 DGLTALDLAEAQGHPAIARFLR 195
                 8*******86689999999764 PP

>> Ank_3  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.2   0.1    0.0025       4.4       1      30 [.      40      68 ..      40      69 .. 0.89
   2 !    9.6   0.0   0.00084       1.5       1      23 [.      73      95 ..      73     101 .. 0.88
   3 !    6.4   0.0    0.0097        17       2      29 ..     107     133 ..     107     135 .. 0.85
   4 !   12.3   0.0   0.00011       0.2       1      29 [.     141     168 ..     141     170 .. 0.89
   5 ?    1.6   0.0      0.35   6.3e+02       1      21 [.     174     194 ..     174     202 .. 0.89

  Alignments for each domain:
  == domain 1  score: 8.2 bits;  conditional E-value: 0.0025
       Ank_3  1 nGetpLhlAarsgnleivkfLlenkgadvn 30
                nG tpL  A++ g +  +++Ll   +a vn
  KOO21430.1 40 NGITPLIAACSKGYYGCAQLLLA-AHAAVN 68
                79*************88999999.777777 PP

  == domain 2  score: 9.6 bits;  conditional E-value: 0.00084
       Ank_3  1 nGetpLhlAarsgnleivkfLle 23
                nG tpL++A++ g    v++Ll 
  KOO21430.1 73 NGATPLYVACSKGEGGCVQLLLA 95
                799************88999998 PP

  == domain 3  score: 6.4 bits;  conditional E-value: 0.0097
       Ank_3   2 GetpLhlAarsgnleivkfLlenkgadv 29 
                 G tpL  A+ +g+   vk+Ll   +a v
  KOO21430.1 107 GATPLIAACVAGDGGCVKLLLA-AHAAV 133
                 78************88*****9.55555 PP

  == domain 4  score: 12.3 bits;  conditional E-value: 0.00011
       Ank_3   1 nGetpLhlAarsgnleivkfLlenkgadv 29 
                 nG tpL  A+ +g+ +ivk+L+   ga +
  KOO21430.1 141 NGVTPLIAACDAGSMDIVKLLVH-AGARI 168
                 799******************99.77766 PP

  == domain 5  score: 1.6 bits;  conditional E-value: 0.35
       Ank_3   1 nGetpLhlAarsgnleivkfL 21 
                 +G t+L lA  +g+++i++fL
  KOO21430.1 174 DGLTALDLAEAQGHPAIARFL 194
                 699************999998 PP

>> zf-C3HC4_3  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.7   8.3   8.9e-14   1.6e-10       3      48 ..     432     473 ..     430     475 .. 0.96

  Alignments for each domain:
  == domain 1  score: 40.7 bits;  conditional E-value: 8.9e-14
                 SB-TTTSSSBS-EEETTEEEEEE-HHHHHHHHHTT-B-TTT--B-- CS
  zf-C3HC4_3   3 eeCviClerprnvvllpCgHlvlCeeCaekllkrkkkCpiCrrpie 48 
                 ++C++C+  p++++ +pCgH+ +Ce+C  ++    k Cp+Cr+p++
  KOO21430.1 432 TTCIVCMMGPKSHLAVPCGHQLACERCTANM----KICPFCRTPVQ 473
                 78*****************************....*********97 PP

>> Prok-RING_4  Prokaryotic RING finger family 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3  10.3   1.7e-06    0.0031       1      39 [.     434     471 ..     434     474 .. 0.88

  Alignments for each domain:
  == domain 1  score: 17.3 bits;  conditional E-value: 1.7e-06
  Prok-RING_4   1 CvlCgeqekkailepCgHl.vCkeCfdskdlssCPlCqrr 39 
                  C++C   +k +  +pCgH   C++C    +++ CP+C++ 
   KOO21430.1 434 CIVCMMGPKSHLAVPCGHQlACERCTA--NMKICPFCRTP 471
                  ******************769****75..6667****986 PP

>> zf-RING_2  Ring finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6  10.8   7.5e-05      0.13       2      44 .]     433     469 ..     432     469 .. 0.77

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 7.5e-05
   zf-RING_2   2 eCpICleelssadsvlllpCgHv.fhreClerwlrssstCPlCr 44 
                 +C +C+  + +++++  +pCgH   ++ C     ++ + CP+Cr
  KOO21430.1 433 TCIVCM--MGPKSHLA-VPCGHQlACERCT----ANMKICPFCR 469
                 7****9..77666666.56***97899994....45677****9 PP

>> zf-RING_5  zinc-RING finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.0  10.8    0.0015       2.7      14      44 .]     443     470 ..     433     470 .. 0.79

  Alignments for each domain:
  == domain 1  score: 8.0 bits;  conditional E-value: 0.0015
   zf-RING_5  14 kfyltsCgHi.fCekClkkllekeavCpiCrk 44 
                     ++CgH  +Ce+C  + +     Cp+Cr+
  KOO21430.1 443 SHLAVPCGHQlACERCTANMK----ICPFCRT 470
                 556789***989*********....*****95 PP

>> GST_N_5  Glutathione S-transferase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.4   0.2      0.11     2e+02       6      24 ..      50      68 ..      46      74 .. 0.85
   2 ?    2.1   0.0      0.14   2.5e+02       5      21 ..      82      98 ..      78     105 .. 0.81
   3 ?    5.4   0.3     0.013        24       8      33 ..     118     143 ..     115     147 .. 0.86

  Alignments for each domain:
  == domain 1  score: 2.4 bits;  conditional E-value: 0.11
     GST_N_5  6 seGnphglkvLaaakaakg 24
                s+G +++ ++L aa aa  
  KOO21430.1 50 SKGYYGCAQLLLAAHAAVN 68
                8999**********98855 PP

  == domain 2  score: 2.1 bits;  conditional E-value: 0.14
     GST_N_5  5 vseGnphglkvLaaaka 21
                 s+G  +++++L aa a
  KOO21430.1 82 CSKGEGGCVQLLLAAHA 98
                589999********964 PP

  == domain 3  score: 5.4 bits;  conditional E-value: 0.013
     GST_N_5   8 GnphglkvLaaakaakgkvevqvqtv 33 
                 G  +++k+L aa aa  k++++v  v
  KOO21430.1 118 GDGGCVKLLLAAHAAVDKAGINVNGV 143
                 6669***********99999988766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (481 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1733  (0.096659); expected 358.6 (0.02)
Passed bias filter:                      761  (0.0424452); expected 358.6 (0.02)
Passed Vit filter:                        89  (0.00496402); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.62u 0.25s 00:00:00.87 Elapsed: 00:00:00.40
# Mc/sec: 3644.25
//
Query:       KOO21431.1  [L=505]
Description: cargo receptor for soluble protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.3e-31  110.2   4.6    1.8e-31  109.8   4.6    1.1  1  SURF4     SURF4 family


Domain annotation for each model (and alignments):
>> SURF4  SURF4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  109.8   4.6   9.8e-36   1.8e-31      18     265 ..     234     503 ..     223     505 .] 0.78

  Alignments for each domain:
  == domain 1  score: 109.8 bits;  conditional E-value: 9.8e-36
       SURF4  18 tkkylPtlarlllvatfleDglrllfqwsdqveyldkskklgyflatllvlvvllglligsllvv.....lrkk..vayavgvLlfivilqaiaYsllt 109
                   ++l  +a l+ v t+leD++r ++ w++q  ++ k+ +l+  +a  ++l+v   +l++  +++      r    v + +  ++f+vilq i+++ lt
  KOO21431.1 234 ASTILSCVATLFTVLTYLEDSIRCITMWNEQLAFIAKHVGLPSSIAGAMLLFVAGVQLVSPIIIIptaavPRMAvpVMIVTCAIAFTVILQPILFNQLT 332
                 5678999*************************************998776666666666555554111113333114455667899************* PP

       SURF4 110 dlklllrnlsvigglllllaesli...ekkslfag.lPeleeeekaks...ylllagrvllvl...mfisllafelsftr...vlltiigvali..... 190
                 +++ll+  ++  g+  +++ae+      +ks fa+ l + ++  ka +   +++l +rv+l++   ++++l  +e+ +     +++ i +++ i     
  KOO21431.1 333 NVELLTLSMAQLGACGIVFAEAHFvayPRKSPFAThLASADH-YKAATivpWIQLLSRVMLTVdlaLVFGLRLSEMFYSDdsgIVVGIASTTYIlilla 430
                 *********************965222567788861555555.4444322279*******986333456788888888644448888888775422223 PP

       SURF4 191 .ilvviGfktklaalvLvllLfvlnlvlnafWtipkekelrdflkYdffqtlsviGGLLlvvatGpGelsvDekkk 265
                  ++v++G+kt+  a +++l +f+  +v   fW   +++  +   ++ ffq++  +GGLLl+va+GpG++svD   k
  KOO21431.1 431 gLMVWLGYKTQACACIIALAVFTDAFVRFPFWEGGRNADHK---RFHFFQAMTPVGGLLLLVALGPGRFSVDAASK 503
                 3479*****************************87766655...****************************8766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (505 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       642  (0.0358079); expected 358.6 (0.02)
Passed bias filter:                      334  (0.018629); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.53u 0.23s 00:00:00.76 Elapsed: 00:00:00.41
# Mc/sec: 3706.50
//
Query:       KOO21432.1  [L=450]
Description: ankyrin repeat-containing protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
      1e-15   58.0   0.1    7.2e-08   32.9   0.0    2.4  3  Ank_2          Ankyrin repeats (3 copies)
    2.4e-10   40.7   0.2    6.7e-07   29.7   0.0    2.8  2  Ank_4          Ankyrin repeats (many copies)
    3.4e-08   33.6   0.3    0.00076   19.7   0.0    2.9  3  Ank_5          Ankyrin repeats (many copies)
    2.4e-06   27.4   0.1      0.018   15.5   0.0    3.4  3  Ank_3          Ankyrin repeat
    2.5e-06   27.7   3.9     0.0013   19.1   0.1    3.2  3  Ank            Ankyrin repeat
  ------ inclusion threshold ------
      0.032   13.5   0.1      0.084   12.2   0.1    1.7  1  Stanniocalcin  Stanniocalcin family
      0.056   13.4   0.5       0.13   12.3   0.5    1.5  1  zf-RING_5      zinc-RING finger domain


Domain annotation for each model (and alignments):
>> Ank_2  Ankyrin repeats (3 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.9   0.0   2.8e-11   7.2e-08      27      82 ..      20      83 ..       5      84 .. 0.81
   2 !   31.1   0.0     1e-10   2.7e-07       1      57 [.      23      91 ..      23     119 .. 0.73
   3 ?   -2.7   0.0       3.7   9.4e+03      29      35 ..     208     214 ..     192     241 .. 0.68

  Alignments for each domain:
  == domain 1  score: 32.9 bits;  conditional E-value: 2.8e-11
       Ank_2 27 ktaLhyAakngnleivklLleh........adndgrtpLhyAarsghleivklLlekgadinlk 82
                 ++Lh+Aa +g++ +v  Ll          +d dg+ pLh+Aa  g+l++++ +l +g+d+n+ 
  KOO21432.1 20 GSPLHWAAYKGHVRLVYRLLTCkpkmsakeLDGDGNMPLHCAAAGGSLKCIETMLSQGVDVNIA 83
                48***********999777753355666677799*********99**********88****986 PP

  == domain 2  score: 31.1 bits;  conditional E-value: 1e-10
       Ank_2  1 LhlAakngnlelvklLl.egadpn.k....ngktaLhyAakngnleivklLleh......adndgrtpL 57
                Lh+Aa++g+  lv  Ll ++ +++ k    +g+ +Lh+Aa +g+l++++++l++      a+ +g+ p 
  KOO21432.1 23 LHWAAYKGHVRLVYRLLtCKPKMSaKeldgDGNMPLHCAAAGGSLKCIETMLSQgvdvniANAYGNKPV 91
                899999999999999997665555524558999999999999999999999987766555446666664 PP

  == domain 3  score: -2.7 bits;  conditional E-value: 3.7
       Ank_2  29 aLhyAak 35 
                 aLh+A+ 
  KOO21432.1 208 ALHAAVT 214
                 4444433 PP

>> Ank_4  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.7   0.0   2.6e-10   6.7e-07       3      53 ..      21      72 ..      20      74 .. 0.89
   2 !   17.0   0.0   2.5e-06    0.0064       4      40 ..      57      92 ..      57      93 .. 0.94

  Alignments for each domain:
  == domain 1  score: 29.7 bits;  conditional E-value: 2.6e-10
       Ank_4  3 taLhyaaisgrlelvrlLl.ek.gadinaqdnrsGetalhiAakrgnveilkl 53
                ++Lh+aa++g+++lv +Ll +k +++  +  +++G+ +lh+Aa +g++++++ 
  KOO21432.1 21 SPLHWAAYKGHVRLVYRLLtCKpKMSAKEL-DGDGNMPLHCAAAGGSLKCIET 72
                69************9999977777887777.*******************985 PP

  == domain 2  score: 17.0 bits;  conditional E-value: 2.5e-06
       Ank_4  4 aLhyaaisgrlelvrlLlekgadinaqdnrsGetalh 40
                +Lh aa+ g l++++  l++g+d+n   n++G+ +++
  KOO21432.1 57 PLHCAAAGGSLKCIETMLSQGVDVNIA-NAYGNKPVQ 92
                79************************8.*****9975 PP

>> Ank_5  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   0.0   2.6e-06    0.0065      18      52 ..      21      57 ..      13      57 .. 0.94
   2 !   19.7   0.0     3e-07   0.00076      12      55 ..      50      93 ..      38      93 .. 0.89
   3 ?   -2.6   0.0         3   7.8e+03      18      28 ..     104     114 ..      99     115 .. 0.77

  Alignments for each domain:
  == domain 1  score: 16.8 bits;  conditional E-value: 2.6e-06
       Ank_5 18 tpLhvAakygaadvvrlLl..argadlnltdsrGlta 52
                +pLh+Aa++g+ ++v +Ll  ++ ++++  d++G+++
  KOO21432.1 21 SPLHWAAYKGHVRLVYRLLtcKPKMSAKELDGDGNMP 57
                8*********************************987 PP

  == domain 2  score: 19.7 bits;  conditional E-value: 3e-07
       Ank_5 12 ldgggntpLhvAakygaadvvrlLlargadlnltdsrGltaldl 55
                ldg+gn pLh Aa +g++ +++ +l  g+d n+ +++G+ +++l
  KOO21432.1 50 LDGDGNMPLHCAAAGGSLKCIETMLSQGVDVNIANAYGNKPVQL 93
                799************************************99986 PP

  == domain 3  score: -2.6 bits;  conditional E-value: 3
       Ank_5  18 tpLhvAakyga 28 
                  + +vAak g+
  KOO21432.1 104 KAAMVAAKEGR 114
                 5789***9876 PP

>> Ank_3  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.0   0.0     0.002       5.1       4      23 ..      21      40 ..      20      45 .. 0.88
   2 !   15.5   0.0   6.9e-06     0.018       1      31 []      53      82 ..      53      82 .. 0.96
   3 ?   -3.9   0.0         7   1.8e+04      16      25 ..     417     425 ..     411     428 .. 0.66

  Alignments for each domain:
  == domain 1  score: 8.0 bits;  conditional E-value: 0.002
       Ank_3  4 tpLhlAarsgnleivkfLle 23
                +pLh+Aa  g++ +v  Ll 
  KOO21432.1 21 SPLHWAAYKGHVRLVYRLLT 40
                7***********99988886 PP

  == domain 2  score: 15.5 bits;  conditional E-value: 6.9e-06
       Ank_3  1 nGetpLhlAarsgnleivkfLlenkgadvna 31
                +G+ pLh+Aa  g+l+ ++ +l   g+dvn+
  KOO21432.1 53 DGNMPLHCAAAGGSLKCIETMLS-QGVDVNI 82
                6999************9******.9****97 PP

  == domain 3  score: -3.9 bits;  conditional E-value: 7
       Ank_3  16 eivkfLlenk 25 
                 + +k+Ll++ 
  KOO21432.1 417 D-LKALLKQA 425
                 5.89999854 PP

>> Ank  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.5   0.0    0.0011       2.9       4      22 ..      21      39 ..      21      47 .. 0.85
   2 !   19.1   0.1   4.9e-07    0.0013       1      31 [.      53      84 ..      53      85 .. 0.92
   3 ?   -2.8   0.1       4.2   1.1e+04       5      11 ..     208     214 ..     208     220 .. 0.80

  Alignments for each domain:
  == domain 1  score: 8.5 bits;  conditional E-value: 0.0011
                BHHHHHHHHTTHHHHHHHH CS
         Ank  4 TPLHlAatngkkriiklLL 22
                +PLH+Aa+ g++r +  LL
  KOO21432.1 21 SPLHWAAYKGHVRLVYRLL 39
                6*********999997676 PP

  == domain 2  score: 19.1 bits;  conditional E-value: 4.9e-07
                TSBBHHHHHHHHTTHHHHHHHH.TTTSTTCBT CS
         Ank  1 dGnTPLHlAatngkkriiklLL.hGAnlnald 31
                dGn PLH+Aa +g++ +i+  L +G ++n+ +
  KOO21432.1 53 DGNMPLHCAAAGGSLKCIETMLsQGVDVNIAN 84
                8999******9999********99*****876 PP

  == domain 3  score: -2.8 bits;  conditional E-value: 4.2
                 HHHHHHH CS
         Ank   5 PLHlAat 11 
                 +LH A+t
  KOO21432.1 208 ALHAAVT 214
                 7999985 PP

>> Stanniocalcin  Stanniocalcin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.1   3.3e-05     0.084     122     185 ..     118     181 ..      80     187 .. 0.82

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 3.3e-05
  Stanniocalcin 122 CylkldiCsvakenpeaivevvklkdlfpnryysellqslleCdeetveavrsslvaklgpdla 185
                    C  +++ Cs ak+ ++++ + v  ++  p ry ++ + ++   +++  +a+++  v kl++ ++
     KOO21432.1 118 CACSHEFCSEAKSVADVVIDRVSAPNSRPVRYSMKSMGLIRAAEDNLTHAIKDENVPKLEEAIE 181
                    7789*************************************************99999998766 PP

>> zf-RING_5  zinc-RING finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.5     5e-05      0.13       4      27 ..      98     127 ..      97     131 .. 0.91

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 5e-05
   zf-RING_5   4 kCfekl......skeekfyltsCgHifCek 27 
                 kC+e l       ke ++yl +C+H fC++
  KOO21432.1  98 KCSELLkaamvaAKEGRYYLCACSHEFCSE 127
                 79999999999999**************85 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (450 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       744  (0.041497); expected 358.6 (0.02)
Passed bias filter:                      365  (0.0203581); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.50u 0.23s 00:00:00.73 Elapsed: 00:00:00.38
# Mc/sec: 3526.05
//
Query:       KOO21433.1  [L=371]
Description: 60s ribosomal protein l35 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.9e-33  116.1   0.0    6.3e-28   98.1   0.0    2.6  2  ParcG          Parkin co-regulated protein
    6.6e-20   70.8   3.4    6.6e-20   70.8   3.4    3.1  3  Ribosomal_L29  Ribosomal L29 protein
  ------ inclusion threshold ------
      0.058   13.4   2.3        1.5    8.8   0.3    2.5  2  HLH            Helix-loop-helix DNA-binding domain
        1.5    9.3   5.9          2    8.9   0.5    2.4  2  DUF4208        Domain of unknown function (DUF4208)


Domain annotation for each model (and alignments):
>> ParcG  Parkin co-regulated protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.0     4e-06     0.018       2      29 ..      50      76 ..      49      82 .. 0.87
   2 !   98.1   0.0   1.4e-31   6.3e-28      32     163 ..     108     246 ..     104     257 .. 0.89

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 4e-06
       ParcG  2 sFravydrGdipirvehgskkkkiqWkv 29
                 F+ vydrGd+pirv+ g   k ++W+v
  KOO21433.1 50 IFKVVYDRGDLPIRVNGGVA-KYVRWAV 76
                69*************98776.899**87 PP

  == domain 2  score: 98.1 bits;  conditional E-value: 1.4e-31
       ParcG  32 ekLdydalLplffdGlretkhpyrflategikdllea..ageekilpvlpklilplkeaLntrdeeviesaLkvlqklvk.......aseligeaLvpy 121
                  +Ldy+ +LplffdGlre+++p rfla +g+ +ll    a   ++ pvlp lilpl++aLntr+ + + +a+++lq+lvk       +++++g+ L py
  KOO21433.1 108 RALDYNVMLPLFFDGLREESEPCRFLAATGMAELLAPahADAARVGPVLPLLILPLRQALNTRKIDTVRRAITALQQLVKvpgtdpaSGQTVGALLAPY 206
                 68*********************************987677889***********************************84443333589********* PP

       ParcG 122 yrqlLpvlnlfknkrvnlgdkidyrkkknikdliqetlelle 163
                 +r++Lpv+nlfk+++   +   dy  + +i++l++et++ll 
  KOO21433.1 207 FRHILPVFNLFKSRSSLATSGSDY--SISIGELMDETMHLLA 246
                 *************99777777777..4679999999998876 PP

>> Ribosomal_L29  Ribosomal L29 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.2   0.2     0.039   1.7e+02      33      47 ..     165     179 ..     162     184 .. 0.83
   2 !   70.8   3.4   1.5e-23   6.6e-20       2      56 ..     256     311 ..     255     311 .. 0.98
   3 ?   -2.0   0.7      0.84   3.8e+03      18      42 ..     346     355 ..     329     360 .. 0.37

  Alignments for each domain:
  == domain 1  score: 2.2 bits;  conditional E-value: 0.039
                    SSS-CHHHHHHHHHH CS
  Ribosomal_L29  33 qlenpsrirkvRkdI 47 
                    q  n+ +i +vR+ I
     KOO21433.1 165 QALNTRKIDTVRRAI 179
                    4459*********99 PP

  == domain 2  score: 70.8 bits;  conditional E-value: 1.5e-23
                    HHHHS-HHHHHHHHHHHHHHHHHHHHHHHHT.SSS-CHHHHHHHHHHHHHHHHHHH CS
  Ribosomal_L29   2 elrelsdeeLkeklkelkkeLfnLrfqkatg.qlenpsrirkvRkdIARikTvlre 56 
                    elr++++++L+++l+elk+eL  Lr++k+tg + +++s+i+ vRk+IAR++Tv+++
     KOO21433.1 256 ELRNKNKADLEKQLEELKTELAALRVAKVTGgAASKLSKIKVVRKSIARVLTVINQ 311
                    9******************************999********************98 PP

  == domain 3  score: -2.0 bits;  conditional E-value: 0.84
                    HHHHHHHHHHHHHHTSSS-CHHHHH CS
  Ribosomal_L29  18 lkkeLfnLrfqkatgqlenpsrirk 42 
                     +k                ++ +++
     KOO21433.1 346 QQK---------------SLKTLKQ 355
                    222...............3333333 PP

>> HLH  Helix-loop-helix DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.7   0.1     0.014        61      27      52 ..     161     185 ..     156     186 .. 0.83
   2 ?    8.8   0.3   0.00034       1.5      18      46 ..     267     302 ..     260     306 .. 0.84

  Alignments for each domain:
  == domain 1  score: 3.7 bits;  conditional E-value: 0.014
                 STCSTTSS-STHHHHHHHHHHHHHHH CS
         HLH  27 lPslppskKlsKaeiLekAveYIkhL 52 
                 lP l++  +  K++++++A+  +++L
  KOO21433.1 161 LP-LRQALNTRKIDTVRRAITALQQL 185
                 55.67777889*********999998 PP

  == domain 2  score: 8.8 bits;  conditional E-value: 0.00034
                 HHHHHHHHCST.......CSTTSS-STHHHHHHHHH CS
         HLH  18 saleeLrellP.......slppskKlsKaeiLekAv 46 
                 + leeL++ l        ++++ +KlsK+ +++k +
  KOO21433.1 267 KQLEELKTELAalrvakvTGGAASKLSKIKVVRKSI 302
                 667888888888888888999*************98 PP

>> DUF4208  Domain of unknown function (DUF4208)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.8   0.7     0.036   1.6e+02       7      49 ..     239     278 ..     234     322 .. 0.71
   2 ?    8.9   0.5   0.00044         2       9      37 ..     337     366 ..     331     371 .] 0.80

  Alignments for each domain:
  == domain 1  score: 2.8 bits;  conditional E-value: 0.036
     DUF4208   7 deeeckellrpvkksLkrLkkltkekllskkerakilkkeLlk 49 
                 de++    l+ +k + ++L++ +k    + ++++++lk+eL +
  KOO21433.1 239 DETMHLLALHAMKLKVHELRNKNKA---DLEKQLEELKTELAA 278
                 5555556667777777777766555...666777777777754 PP

  == domain 2  score: 8.9 bits;  conditional E-value: 0.00044
     DUF4208   9 eeckellrpvkksLkrLkkltkekl.lskk 37 
                   +++ l p +ksLk+Lk+++kek  + +k
  KOO21433.1 337 RAIRKALTPQQKSLKTLKQAKKEKHfPIRK 366
                 4589****************9998755554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (371 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1031  (0.0575046); expected 358.6 (0.02)
Passed bias filter:                      551  (0.0307323); expected 358.6 (0.02)
Passed Vit filter:                        52  (0.00290033); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.51u 0.25s 00:00:00.76 Elapsed: 00:00:00.42
# Mc/sec: 2640.49
//
Query:       KOO21434.1  [L=511]
Description: zinc carboxypeptidase family protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    8.4e-16   58.6   0.0    1.3e-15   57.9   0.0    1.3  1  Peptidase_M14    Zinc carboxypeptidase
    5.9e-13   49.1   0.0    9.5e-13   48.4   0.0    1.3  1  Pepdidase_M14_N  Cytosolic carboxypeptidase N-terminal domain
  ------ inclusion threshold ------
      0.015   14.4   0.1      0.022   13.9   0.1    1.2  1  AstE_AspA        Succinylglutamate desuccinylase / Aspartoacy
       0.08   12.6   0.4        3.4    7.4   0.0    2.4  2  Pentapeptide     Pentapeptide repeats (8 copies)


Domain annotation for each model (and alignments):
>> Peptidase_M14  Zinc carboxypeptidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.9   0.0     3e-19   1.3e-15      21     134 ..     205     325 ..     200     359 .. 0.93

  Alignments for each domain:
  == domain 1  score: 57.9 bits;  conditional E-value: 3e-19
                    EEE-TTS-EEEEEEE-SSTT......................STTST-CEEEEEE-SSTT-HHHHHHHHHHHHHHHHHTTTSHHHHHHHHHEEEEE CS
  Peptidase_M14  21 iGkSvegRplkvlkisssat......................eaeegkpvvlidggiHarEwigsalllylleqLlsaYgedeeikellddtdiyi 94 
                    +++S egR ++++++s  ++                      ++  +kpv+++++++H++E+ +s++   +++ Ll++   d++++ l++++++ +
     KOO21434.1 205 LTRSLEGRRIDLITLSGTNGmlgrteeplrqtglmpeggsraRSFGAKPVFMLTARVHPGETPASHVFDGFVNFLLRE--HDPRARALRERFVFKL 298
                    689*************9988********************999999*******************************9..**************** PP

                    ES-STHHHHHHHHHT-TTTTST-SBCTTSSSBS--GGGSS CS
  Peptidase_M14  95 lpvlNPDGyeysstedrlwrknrsnakessceGvDlnRnF 134
                    +p++NPDG+ + ++        r++++     G++lnR +
     KOO21434.1 299 IPMINPDGVYRGHY--------RADTR-----GANLNRCY 325
                    *************7........99999.....99999976 PP

>> Pepdidase_M14_N  Cytosolic carboxypeptidase N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.4   0.0   2.1e-16   9.5e-13       1     106 [.      14     136 ..      14     138 .. 0.84

  Alignments for each domain:
  == domain 1  score: 48.4 bits;  conditional E-value: 2.1e-16
  Pepdidase_M14_N   1 issafdsGnievvsaedkeevelsirkD....leksehrqWFyFrvsgar.gekltftienagkas..ypkgwkgykvvasydrkeWrrvd..t 85 
                      +ss++dsGn++ v++ d++e+ l+ + D      ++ +r+WF F v ga+ g++ltf i+n++ +    ++g+ +  v +   r +W+r++  t
       KOO21434.1  14 FSSDYDSGNASRVEQVDEHEFALWTACDaegtPFEKGYRTWFGFAVRGAAkGRQLTFYIHNMNAQGklIRQGMCPS-VRVLPSRPTWTRIPlqT 106
                      799*************************5555445599**********999***********888777*******6.77777899******998 PP

  Pepdidase_M14_N  86 eyd......ggtltithth...ekdtvyfA 106
                      +y       + +l+++h++    ++t yfA
       KOO21434.1 107 TYTgckeedNFVLRFRHKMdgePDETTYFA 136
                      888555544588999998866556677776 PP

>> AstE_AspA  Succinylglutamate desuccinylase / Aspartoacylase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.1   4.8e-06     0.022       3     122 ..     253     374 ..     251     396 .. 0.74

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 4.8e-06
                 -EEEEEE-SSTT-HHHHHHHHHHHHHHHCCC.....ESCCEE...EEEESSHHHHHCTSSSSSTT-S-CTTTTTCCCCCSSTCHHHHHHHHHHHHHHHC CS
   AstE_AspA   3 pkvlisAGvHGnElaGvellrqllkqleead.....ilgeit...lvplaNppAiaagsRyipidredLNRaFpgrslgrsldealrateaerladalf 93 
                 p ++++A vH  E+ + ++++ +++ l ++       l+e+    l+p++Np ++ +g+ + ++   +LNR++   + +        ++++  l+++l 
  KOO21434.1 253 PVFMLTARVHPGETPASHVFDGFVNFLLREHdprarALRERFvfkLIPMINPDGVYRGHYRADTRGANLNRCYLACPFE----THPSVNAIAALVRHLH 347
                 567889999999999999877666666555533225444444233579***********77777*********998888....6677889999999999 PP

                 HCTCCCGCEEEEEEEESSTBCCSSEEEE- CS
   AstE_AspA  94 aaalpeadivlDLHtgtrglkhllfaead 122
                 a++     + +D H   + +++ lf  a 
  KOO21434.1 348 AKG--VLSFYIDTHGHATKRGCFLFGNAL 374
                 666..589999999999999999888765 PP

>> Pentapeptide  Pentapeptide repeats (8 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.2   0.1     0.016        71      21      32 ..     314     325 ..     312     328 .. 0.43
   2 ?    7.4   0.0   0.00075       3.4       1      20 [.     387     406 ..     387     411 .. 0.87

  Alignments for each domain:
  == domain 1  score: 3.2 bits;  conditional E-value: 0.016
                   EEECT-B-TT-E CS
  Pentapeptide  21 AnLtgAnlsgAd 32 
                   A+ +gAnl+++ 
    KOO21434.1 314 ADTRGANLNRCY 325
                   344444444332 PP

  == domain 2  score: 7.4 bits;  conditional E-value: 0.00075
                   -B-TT-B-CCSCCEECCCES CS
  Pentapeptide   1 AnLsgAnLsganLsganlsg 20 
                   A L gAn+++ ++ g+ +++
    KOO21434.1 387 AKLVGANCRWFDFGGCVFTE 406
                   7899*************997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (511 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       386  (0.0215294); expected 358.6 (0.02)
Passed bias filter:                      325  (0.0181271); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.49u 0.23s 00:00:00.72 Elapsed: 00:00:00.39
# Mc/sec: 3945.50
//
Query:       KOO21435.1  [L=234]
Description: hypothetical protein Ctob_002988 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
  ------ inclusion threshold ------
       0.02   14.4   2.5      0.029   13.9   2.5    1.3  1  Exonuc_VII_L   Exonuclease VII, large subunit
      0.024   15.0   3.9          2    8.8   2.0    2.5  2  BLOC1_2        Biogenesis of lysosome-related organelles comp
      0.095   12.7   1.4       0.65   10.0   0.4    2.2  2  Baculo_PEP_C   Baculovirus polyhedron envelope protein, PEP, 
       0.33   10.3  10.1       0.49    9.7  10.1    1.2  1  DUF4407        Domain of unknown function (DUF4407)
       0.33   11.0  13.6       0.68    9.9  13.7    1.5  1  Cep57_CLD      Centrosome localisation domain of Cep57
        3.2    6.9   6.6        0.9    8.7   1.9    1.9  2  TMPIT          TMPIT-like protein
        3.4    7.8   6.3        5.5    7.2   6.3    1.3  1  MutS_III       MutS domain III
        3.7    6.8   4.8        5.3    6.3   4.8    1.3  1  CorA           CorA-like Mg2+ transporter protein
        5.5    7.7  19.4        4.7    7.9   1.7    4.0  3  SlyX           SlyX
        7.2    5.6  13.6       0.74    8.8   7.9    1.8  2  Atg14          Vacuolar sorting 38 and autophagy-related subu
        7.7    6.4  11.1         26    4.7  10.6    1.7  1  RRP36          rRNA biogenesis protein RRP36


Domain annotation for each model (and alignments):
>> Exonuc_VII_L  Exonuclease VII, large subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   2.5   1.8e-05     0.029     148     260 ..      82     207 ..      43     224 .. 0.48

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 1.8e-05
  Exonuc_VII_L 148 qleelerrlek....aikrlleekkqrleklasrlkspeellerkrqrldeleerleralkkq....lkkkrerleelkerl.k....ekleekker 231
                    ++ele++l++      ++ l + +++  +++ r+   e++l++++ r++   e+l+++ ++q     k+++e +e+l+++l +    ++ e+ +++
    KOO21435.1  82 IIQELEQQLRRggvaDSSESLGDLRRQNAAITARCIALEQQLADAQTRCRC-VEDLNAKWREQysilKKREEESWERLQRSLkRvdraDQAEQSHQK 177
                   222222222221111222233333333333334444444444444444332.233333333333332455555666666555336444333333333 PP

  Exonuc_VII_L 232 l.kklkerlelleekkerleeleekleals 260
                   l ++lk+r +++ ++ +r++ele+ +e+l 
    KOO21435.1 178 LtSALKQRSAEVVKQGQRIAELEAMVEHLR 207
                   334444444456666666666666655554 PP

>> BLOC1_2  Biogenesis of lysosome-related organelles complex-1 subunit 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.4   0.1    0.0069        11      20      70 ..     100     150 ..      80     167 .. 0.78
   2 ?    8.8   2.0    0.0012         2      34      79 ..     163     208 ..     141     213 .. 0.71

  Alignments for each domain:
  == domain 1  score: 6.4 bits;  conditional E-value: 0.0069
     BLOC1_2  20 edyklLeklNeaasekykklkdvaaslekkleklnekyeelqpylqqidqi 70 
                 e +  L + N a ++++ +l++++a++++    ++ ++++ +++ + +++ 
  KOO21435.1 100 ESLGDLRRQNAAITARCIALEQQLADAQTRCRCVEDLNAKWREQYSILKKR 150
                 556668899999999999999999999998888888888888877777665 PP

  == domain 2  score: 8.8 bits;  conditional E-value: 0.0012
     BLOC1_2  34 ekykklkdvaaslekkleklnekyeelqpylqqidqiekqvteLee 79 
                 ++++  +++ +s +k  ++l+++++e+ ++ q+i ++e+ v++L +
  KOO21435.1 163 KRVDRADQAEQSHQKLTSALKQRSAEVVKQGQRIAELEAMVEHLRT 208
                 4555566666667777777888888888888888888888888765 PP

>> Baculo_PEP_C  Baculovirus polyhedron envelope protein, PEP, C terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   0.4    0.0004      0.65      13      92 ..      93     180 ..      81     190 .. 0.67
   2 ?    1.8   0.2      0.14   2.3e+02      56      75 ..     194     213 ..     167     226 .. 0.41

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.0004
  Baculo_PEP_C  13 nqfldLtnvLnairlqnvqila...qlatlldaietq...LnalsedlksllaeldtrldtlltnLtdalnalq..dtlrneLtnlns 92 
                   ++  d ++ L ++r qn+ i+a   +l+++l++ +t+   +++l+++ ++  + l++r +++ ++L+++l+++   d+ ++  + l+s
    KOO21435.1  93 GGVADSSESLGDLRRQNAAITArciALEQQLADAQTRcrcVEDLNAKWREQYSILKKREEESWERLQRSLKRVDraDQAEQSHQKLTS 180
                   457899***********99987555688888888877333445555555555555667778888888888888777555555555554 PP

  == domain 2  score: 1.8 bits;  conditional E-value: 0.14
  Baculo_PEP_C  56 sllaeldtrldtlltnLtda 75 
                   + +ael++++++l t+L  a
    KOO21435.1 194 QRIAELEAMVEHLRTALAVA 213
                   11233333333333333333 PP

>> DUF4407  Domain of unknown function (DUF4407)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7  10.1    0.0003      0.49     113     226 ..      76     210 ..      70     224 .. 0.50

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 0.0003
     DUF4407 113 aeeqqeeakelkeqlaaa....ltaelaeleaqiaalqaeidaaearldalraeaqkeldgtk.............gtgttgvaGkgpaake......k 188
                 ++ qq+ ++el++ql+      +++ l +l++q+aa+ a   a+e++l+++++  ++  d +               +  +          +      +
  KOO21435.1  76 IAAQQKIIQELEQQLRRGgvadSSESLGDLRRQNAAITARCIALEQQLADAQTRCRCVEDLNAkwreqysilkkreEESWE----------RlqrslkR 164
                 555666666666666666777766666666666666666666666666666666665555433343333344333311222..........12222222 PP

     DUF4407 189 kaqldaaqaelaelkakld........atarlaalraelaeleaer 226
                  + +d+a++  ++l++ l+        +++r+a+l+a  + l++++
  KOO21435.1 165 VDRADQAEQSHQKLTSALKqrsaevvkQGQRIAELEAMVEHLRTAL 210
                 3333333333333333333322444455555555555555555544 PP

>> Cep57_CLD  Centrosome localisation domain of Cep57
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9  13.7   0.00042      0.68      36     140 ..      79     188 ..      68     209 .. 0.72

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.00042
   Cep57_CLD  36 kykkvlqeeseekekekseeskqnqelesqLaaaesrcslLEkqLeymrkmvesaekerkavlekqaslekekkqesselqaklekL...ekLEkeylr 131
                 ++k + + e++ ++   +++s++  +l  q aa  +rc  LE+qL   +   ++ e    +  e+ + l+k+++++ ++lq+ l+++   ++ E+ +++
  KOO21435.1  79 QQKIIQELEQQLRRGGVADSSESLGDLRRQNAAITARCIALEQQLADAQTRCRCVEDLNAKWREQYSILKKREEESWERLQRSLKRVdraDQAEQSHQK 177
                 4444445566666667777888889******************************998888888888888888776666766655551116789***** PP

   Cep57_CLD 132 Ltat..qklae 140
                 Lt++  q+ ae
  KOO21435.1 178 LTSAlkQRSAE 188
                 *9862244444 PP

>> TMPIT  TMPIT-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.4   0.2      0.18     3e+02      35      66 ..      72     100 ..      67     151 .. 0.47
   2 ?    8.7   1.9   0.00055       0.9       2      60 ..     153     210 ..     152     228 .. 0.89

  Alignments for each domain:
  == domain 1  score: 0.4 bits;  conditional E-value: 0.18
       TMPIT  35 cskeikkqkkrlkelksslkklkksvkeeeee 66 
                 +++ i+ q+k ++el+++l++   + +   +e
  KOO21435.1  72 VRSVIAAQQKIIQELEQQLRRGGVADS---SE 100
                 445555555555555555555444322...11 PP

  == domain 2  score: 8.7 bits;  conditional E-value: 0.00055
       TMPIT   2 eeweelekefkeleetakeykqkleelsklqskcskeikkqkkrlkelksslkklkksv 60 
                 e+we+l++++k++  +  + +q+ ++l++  ++ s e+ kq +r+ el++++++l++++
  KOO21435.1 153 ESWERLQRSLKRVDRAD-QAEQSHQKLTSALKQRSAEVVKQGQRIAELEAMVEHLRTAL 210
                 79***********9887.99999*****************************9998874 PP

>> MutS_III  MutS domain III
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.2   6.3    0.0033       5.5      48     174 ..      73     199 ..      70     221 .. 0.48

  Alignments for each domain:
  == domain 1  score: 7.2 bits;  conditional E-value: 0.0033
                 HHHHHHHHHHHHHT..TT.HHHHHHHHTT---HHHHHHHHHTT---.HHHHHHHHHHHHHHHTTTTT---SSTHHHHH.....HHHHHHHHHHB-SS-- CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.....xxxxxxxxxxxxxxxx RF
    MutS_III  48 leeInaRldaVeeleneelreelrellrrlpDleRllsrislgkak.ardlkallealkaleelvallekeklaesee.....eslaelleeaideepl 140
                 +++I a +++++ele++  r  + ++ ++l+Dl R  + i+++     ++l+   + ++ +e+l a ++++ +  ++      e+l++ l++ +d+ + 
  KOO21435.1  73 RSVIAAQQKIIQELEQQLRRGGVADSSESLGDLRRQNAAITARCIAlEQQLADAQTRCRCVEDLNAKWREQYSILKKReeeswERLQRSLKR-VDRADQ 170
                 579**********9988888999999999********9998842221223333333344333333333333322222222122122222222.222222 PP

                 SSGGGS--B-T.............HHHHHHHHHHHHHHHHHHTHHHH CS
                 xxxxxxxxxxx.............xxxxxxxxxxxxxxxxxxxxxxx RF
    MutS_III 141 alekegedlra.............iealeqelfqelleeveealerl 174
                 a++  ++   a             +                  +++l
  KOO21435.1 171 AEQSHQKLTSAlkqrsaevvkqgqR------------------IAEL 199
                 1111111111111122222222221..................2222 PP

>> CorA  CorA-like Mg2+ transporter protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.3   4.8    0.0033       5.3     127     220 ..      76     170 ..      70     212 .. 0.61

  Alignments for each domain:
  == domain 1  score: 6.3 bits;  conditional E-value: 0.0033
        CorA 127 lekleeeldeledeledstkkeilrelaqlrrrlvkl.rralapnrevlkrllakaddkllddedkeylrdlldelerllemlealrerleslqd 220
                 + +  + ++ele++l++   ++  ++l +lrr+ + +  r++a  +++ ++  +++  + l+++ +e+++ l  + e + e l+   +r+++  +
  KOO21435.1  76 IAAQQKIIQELEQQLRRGGVADSSESLGDLRRQNAAItARCIALEQQLADAQTRCRCVEDLNAKWREQYSILKKREEESWERLQRSLKRVDRADQ 170
                 55667889***********************9987775444444444444333333344444444444444444444444444444444433322 PP

>> SlyX  SlyX
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.9   6.4      0.11   1.8e+02      25      42 ..      75      92 ..      70     131 .. 0.67
   2 ?    1.3   2.8      0.33   5.4e+02       3      59 ..     114     174 ..     112     178 .. 0.69
   3 ?    7.9   1.7    0.0029       4.7      18      48 ..     181     211 ..     166     225 .. 0.82

  Alignments for each domain:
  == domain 1  score: 2.9 bits;  conditional E-value: 0.11
                HHHHHHHHHHHHHHHHHH CS
        SlyX 25 vvaeqqqqidrlqrqlrl 42
                v+a+qq+ i++l++qlr+
  KOO21435.1 75 VIAAQQKIIQELEQQLRR 92
                666777777777777664 PP

  == domain 2  score: 1.3 bits;  conditional E-value: 0.33
                 HHHHHHHHHHHHHH...HHHHHHHHHHHHHHHHHHHHHHH.HHHHHHT-XXXXXXXXXXXX CS
        SlyX   3 erleeLEiklafqe...dtieeLndvvaeqqqqidrlqrq.lrllaerlkeleessgasea 59 
                 +r ++LE +la  +   + +e+Ln+   eq   +++ +++  ++l++ lk ++ +++a+++
  KOO21435.1 114 ARCIALEQQLADAQtrcRCVEDLNAKWREQYSILKKREEEsWERLQRSLKRVDRADQAEQS 174
                 5778888888877633456899999999988888776654257777777777777666554 PP

  == domain 3  score: 7.9 bits;  conditional E-value: 0.0029
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHT-X CS
        SlyX  18 tieeLndvvaeqqqqidrlqrqlrllaerlk 48 
                 ++++ +++v++q q+i++l++ +++l+  l+
  KOO21435.1 181 ALKQRSAEVVKQGQRIAELEAMVEHLRTALA 211
                 67777899******************98874 PP

>> Atg14  Vacuolar sorting 38 and autophagy-related subunit 14
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.0   0.6      0.23   3.7e+02      42      90 ..      79     123 ..      67     131 .. 0.46
   2 ?    8.8   7.9   0.00046      0.74      13      99 ..     132     212 ..     124     224 .. 0.89

  Alignments for each domain:
  == domain 1  score: -0.0 bits;  conditional E-value: 0.23
       Atg14  42 kkkiekalegkeeaeqledkiknkkakleelksliadlrerlqelkdkl 90 
                 ++ki ++le++     ++  +  ++++l +l+ + a + +r+  l+++l
  KOO21435.1  79 QQKIIQELEQQL----RRGGVADSSESLGDLRRQNAAITARCIALEQQL 123
                 233333333333....444444444444444444444444444444444 PP

  == domain 2  score: 8.8 bits;  conditional E-value: 0.00046
       Atg14  13 CesClrngperlyelrerlaklksekeslkkkiekalegkeeaeqledkiknkkakleelksliadlrerlqelkdklsqlkkeiee 99 
                 C  +l+       + re++  lk++ e+  +++++ l++ ++a+q+e+  ++++ +l++  +++ ++ +r++el++ +++l+ +++ 
  KOO21435.1 132 CVEDLNA------KWREQYSILKKREEESWERLQRSLKRVDRADQAEQSHQKLTSALKQRSAEVVKQGQRIAELEAMVEHLRTALAV 212
                 4444444......6799****************************************************************998876 PP

>> RRP36  rRNA biogenesis protein RRP36
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.7  10.6     0.016        26      47     121 ..     140     194 ..      75     197 .. 0.69

  Alignments for each domain:
  == domain 1  score: 4.7 bits;  conditional E-value: 0.016
       RRP36  47 feknYaFLdeyrekEleelkkelkkekdkeeekeelkrelqrlesrekerekkererevlkelkkeekekvkegk 121
                  +++Y+ L+                    ++e e  +r  ++l+  +++ + ++ ++++ + lk++  e vk+g+
  KOO21435.1 140 WREQYSILK--------------------KREEESWERLQRSLKRVDRADQAEQSHQKLTSALKQRSAEVVKQGQ 194
                 233333333....................4444555555555555555566666666666666666666677765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (234 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1943  (0.108372); expected 358.6 (0.02)
Passed bias filter:                      780  (0.0435049); expected 358.6 (0.02)
Passed Vit filter:                        85  (0.00474092); expected 17.9 (0.001)
Passed Fwd filter:                        14  (0.000780858); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.52u 0.30s 00:00:00.82 Elapsed: 00:00:00.42
# Mc/sec: 1674.25
//
Query:       KOO21436.1  [L=893]
Description: protein-tyrosine-phosphatase mkp1-like protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
      9e-29  100.0   0.0    1.3e-28   99.4   0.0    1.3  1  DSPc           Dual specificity phosphatase, catalytic domain
    0.00087   18.9   0.0     0.0015   18.2   0.0    1.3  1  Y_phosphatase  Protein-tyrosine phosphatase


Domain annotation for each model (and alignments):
>> DSPc  Dual specificity phosphatase, catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   99.4   0.0   1.5e-32   1.3e-28       3     131 ..     241     369 ..     239     371 .. 0.92

  Alignments for each domain:
  == domain 1  score: 99.4 bits;  conditional E-value: 1.5e-32
                 EEECCHHC.HHHHHHHTCSEEEEESSSSSECECCTTTTSEEEEECCESSTTSCCGGGHHHHHHHHH.HHHHTT-EEEEEESSSSSHHHHHHHHHHHHHH CS
        DSPc   3 lgskstas.lallsklgitlvinvtkevpnanalkkseieklripvedehetkiskyleeavefid.kakqkgkkvlVHCqaGisRSatliiaYlmktk 99 
                 +g++ +a  +a+l+  g+t+++n++  +  +++   + +++l++ + d+  ++is+ + ++ +fid +++q++++v+VHCq+G+sRSatl+iaY+m ++
  KOO21436.1 241 IGAEHSARdEAKLASEGVTAIVNCAGMICANHF--PHRFHYLKLNLLDTAREDISAVFYDVLDFIDdTIEQEHGTVFVHCQHGVSRSATLVIAYIMWKR 337
                 567777778999************977666566..899****************************5559***************************** PP

                 TSCHHHHHHHHHHHSTT-SSTHHHHHHHHHHH CS
        DSPc 100 nlslneayeflkerrpaispnagfirqLleye 131
                 +l +++a+e+++  rp+++pn+gf   Ll++ 
  KOO21436.1 338 GLAYDDALELVRAARPTVNPNIGFACALLQWG 369
                 *****************************996 PP

>> Y_phosphatase  Protein-tyrosine phosphatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.2   0.0   1.7e-07    0.0015     154     196 ..     298     337 ..     278     354 .. 0.78

  Alignments for each domain:
  == domain 1  score: 18.2 bits;  conditional E-value: 1.7e-07
                    HHHHHHHHHHHHHSTTSS-EEEECSSSSHHHHHHHHHHHHHHH CS
  Y_phosphatase 154 sllklirkvekskeaksgpvvVhCsaGvgRtgtfvaldillqq 196
                    ++l++i++  +++   +g v VhC +Gv+R++t+v + i++++
     KOO21436.1 298 DVLDFIDDTIEQE---HGTVFVHCQHGVSRSATLVIAYIMWKR 337
                    4455555555555...9********************999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (893 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       454  (0.0253221); expected 358.6 (0.02)
Passed bias filter:                      295  (0.0164538); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.64u 0.28s 00:00:00.92 Elapsed: 00:00:00.46
# Mc/sec: 5826.90
//
Query:       KOO21437.1  [L=493]
Description: leucine-rich repeat-containing protein 39-like protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.6e-06   26.0   2.7      0.004   16.9   0.1    3.0  2  LRR_8     Leucine rich repeat
    0.00084   19.7   5.0        0.4   11.2   0.1    4.2  4  LRR_4     Leucine Rich repeats (2 copies)
  ------ inclusion threshold ------
      0.016   14.7   0.1      0.039   13.5   0.1    1.6  1  LRR_9     Leucine-rich repeat


Domain annotation for each model (and alignments):
>> LRR_8  Leucine rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   0.1   6.7e-07     0.004       5      61 .]      86     141 ..      86     141 .. 0.98
   2 !    7.8   0.4   0.00045       2.7      25      61 .]     177     217 ..     151     217 .. 0.68

  Alignments for each domain:
  == domain 1  score: 16.9 bits;  conditional E-value: 6.7e-07
                 EEE-TTS--SEE-TTSSTT-TT--EEE--SS---GGGGGGGTT--S-.EEE--SS-- CS
       LRR_8   5 sLdLsnNrltslddeaFkglsnLkvLdLsnNllttlspgafsgLpsLrsLdLsgNrL 61 
                 +LdL+  rl++++ e+ k   +L++L    N++  + p  ++ +++Lr L+L  N+L
  KOO21437.1  86 RLDLTLQRLQVVPGEVLKLGDSLRELTVVGNRICEM-PAELDLCRRLRVLNLAANDL 141
                 599*********************************.9*****************98 PP

  == domain 2  score: 7.8 bits;  conditional E-value: 0.00045
                 TT--EEE--SS---G....GGGGGGTT--S-.EEE--SS-- CS
       LRR_8  25 snLkvLdLsnNlltt....lspgafsgLpsLrsLdLsgNrL 61 
                  +L +LdL+ N+l +    ls+   + Lp Lr+L+L +N+L
  KOO21437.1 177 ASLASLDLGANELCSleslLSAFEARALPGLRQLTLKSNPL 217
                 57888999999764411124555557899999999999987 PP

>> LRR_4  Leucine Rich repeats (2 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.5   0.0      0.15   8.8e+02      12      36 ..      93     118 ..      85     127 .. 0.66
   2 !   11.2   0.1   6.7e-05       0.4       2      38 ..     130     165 ..     129     170 .. 0.77
   3 !    6.4   0.3    0.0021        13       5      36 ..     181     217 ..     151     223 .. 0.61
   4 ?   -3.2   0.0       2.2   1.3e+04      21      30 ..     351     360 ..     345     363 .. 0.56

  Alignments for each domain:
  == domain 1  score: 0.5 bits;  conditional E-value: 0.15
                 ---E-S-..HHH.-TT--EEE-.-S--- CS
       LRR_4  12 qltdipl..lek.lpnLkeLdLsgNnli 36 
                 +l+ +p+  l k  ++L+eL++ gN +i
  KOO21437.1  93 RLQVVPGevL-KlGDSLRELTVVGN-RI 118
                 5666666432.32477999999898.44 PP

  == domain 2  score: 11.2 bits;  conditional E-value: 6.7e-05
                 S--EEE--SS---E-S-HHH-TT--EEE-.-S----- CS
       LRR_4   2 nLevLdLsnNqltdiplleklpnLkeLdLsgNnlitd 38 
                 +L+vL+L+ N l+ +p l  l+ L ++ L  +n+++d
  KOO21437.1 130 RLRVLNLAANDLSGLPDLTRLKELAHVGL-ACNRVDD 165
                 79******88*******777777777778.6666654 PP

  == domain 3  score: 6.4 bits;  conditional E-value: 0.0021
                 EEE--.S..S---E-S-.HH..H-TT--EEE-.-S--- CS
       LRR_4   5 vLdLs.n..Nqltdipl.le..klpnLkeLdLsgNnli 36 
                 +LdL+ n  + l ++ + +e   lp L++L+L +N ++
  KOO21437.1 181 SLDLGaNelCSLESLLSaFEarALPGLRQLTLKSN-PL 217
                 45555332222332222322434888888888555.44 PP

  == domain 4  score: -3.2 bits;  conditional E-value: 2.2
                 H-TT--EEE- CS
       LRR_4  21 klpnLkeLdL 30 
                 kl +L+ L +
  KOO21437.1 351 KLEDLECLVI 360
                 3555665554 PP

>> LRR_9  Leucine-rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.1   6.5e-06     0.039      46     136 ..     133     228 ..     107     240 .. 0.75

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 6.5e-06
       LRR_9  46 tidlsdndirkldgfPllkrlktlllnnnrivria.egleevlP.nleelvltnnelqeladldPlas...lkklellsllknpvtnkkeyrlyvi 136
                  ++l+ nd+  l ++  lk l  + l+ nr+   + + + ++lP +l +l l  nel +l  l    +   l+ l+ l+l +np+   + yrl+v 
  KOO21437.1 133 VLNLAANDLSGLPDLTRLKELAHVGLACNRVDDSSlPAVVRSLPaSLASLDLGANELCSLESLLSAFEaraLPGLRQLTLKSNPLGLIRLYRLRVA 228
                 5677777776666666666666677999*9987654788999995699********99999887654322288999****************9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (493 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       854  (0.0476323); expected 358.6 (0.02)
Passed bias filter:                      450  (0.025099); expected 358.6 (0.02)
Passed Vit filter:                        52  (0.00290033); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.59u 0.28s 00:00:00.87 Elapsed: 00:00:00.43
# Mc/sec: 3406.23
//
Query:       KOO21438.1  [L=1401]
Description: gram-negative bacteria-binding protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.1e-13   51.3   0.0    1.6e-13   50.7   0.0    1.1  1  Peptidase_C65  Peptidase C65 Otubain
      3e-11   43.4   3.5      6e-11   42.4   3.5    1.5  1  WSC            WSC domain
    3.3e-07   30.5   0.0    1.4e-05   25.3   0.0    3.2  2  fn3            Fibronectin type III domain


Domain annotation for each model (and alignments):
>> Peptidase_C65  Peptidase C65 Otubain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.7   0.0   2.7e-17   1.6e-13     124     206 ..      77     160 ..      31     191 .. 0.79

  Alignments for each domain:
  == domain 1  score: 50.7 bits;  conditional E-value: 2.7e-17
                    HHHHHHTSHHHHHHHHHHHHHHHHHHHHHT..HHHHGGGS-TT--HHHHHHHHTSSTT--B-HHHHHHHHHHTT--EEEEESSSS CS
  Peptidase_C65 124 ellkafneqeesdyivvflRlltsaelkth..adeyepFldelstveeFceqevepvnkEaDnvqitaLaealgvkvrVeyldrs 206
                    + +++ +++ e+   +++lRl++sa++++   +de++p  ++   ve+Fc+q+ve+ ++ aD++qitaL++alg+ vrVeyl+  
     KOO21438.1  77 AFVDKACQHAETADALYWLRLIASAYIQRPdvRDEWSPHFEG-LCVEDFCAQQVERDEALADELQITALTTALGLGVRVEYLNSE 160
                    456666667777779*************75338*******99.9**************************************943 PP

>> WSC  WSC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.4   3.5     1e-14     6e-11       1      81 [.     701     786 ..     701     787 .. 0.90

  Alignments for each domain:
  == domain 1  score: 42.4 bits;  conditional E-value: 1e-14
         WSC   1 ylGCytds....sesrrllgpssasdstmtpekCaafCkak..gykyagledgseCyCgnslpaaavkassssCnasCsGdssqtCG 81 
                 y+GC++d     s  ++  ++   +++t++   Caa+C+++   ++++gl+ gs+C C++++ +  + ++ + C+++CsG++ ++CG
  KOO21438.1 701 YQGCFRDPepetSADMPFAFALPGTTHTLSAAVCAAACAEQqpPTTFFGLRAGSHCLCADTFGRYGAVEDHE-CDTPCSGEPGRLCG 786
                 99****998776667777777799999************884569*********************999877.*************9 PP

>> fn3  Fibronectin type III domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.8   0.0       0.1   6.2e+02      54      74 ..     542     564 ..     523     570 .. 0.76
   2 !   25.3   0.0   2.4e-09   1.4e-05       2      82 ..     579     668 ..     578     671 .. 0.81

  Alignments for each domain:
  == domain 1  score: 0.8 bits;  conditional E-value: 0.1
                 T..SSEEEEESSSTTEEEEEEEE CS
         fn3  54 t..ttsvtltgLkpgteYevrVq 74 
                 +  +ts+++  L  g++Y +rV+
  KOO21438.1 542 NegATSAVVAPLLLGEKYIFRVR 564
                 323559****************8 PP

  == domain 2  score: 25.3 bits;  conditional E-value: 2.4e-09
                 CECEEEEEEESSSEEEEEEE-C........S.SSSSTEEEEEEEEEETTSTSTEEEEEECSTSSEEEEESSSTTEEEEEEEEEEETSEEE CS
         fn3   2 aPsnlsvsevtstsltvsWepp........k.dgggpitgYeveyrekgseeewneftvprtttsvtltgLkpgteYevrVqavngggeg 82 
                 aP++l++  v +t + +sW +p        + dgg+ ++gY+v +r  +++e + e  ++ + t++tl++L+p +  ++rV a n++g g
  KOO21438.1 579 APTDLRIGMVFATAVELSWRAPlpmqtglwHgDGGSALVGYRVFVRAADQPESEFELAASVPNTTLTLRDLRPQMLLVFRVCAENRHGPG 668
                 78888888888888889998885554444445689***************997777776666667**********************876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1401 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       236  (0.013163); expected 358.6 (0.02)
Passed bias filter:                      176  (0.0098165); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.74u 0.26s 00:00:01.00 Elapsed: 00:00:00.45
# Mc/sec: 9355.00
//
Query:       KOO21439.1  [L=189]
Description: hypothetical protein Ctob_002982 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.6e-78  262.4   0.3    1.8e-78  262.3   0.3    1.0  1  Ribosomal_L18   Ribosomal protein 60S L18 and 50S L18e
  ------ inclusion threshold ------
      0.014   16.1   0.0      0.025   15.3   0.0    1.5  1  Ribosomal_L27A  Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27


Domain annotation for each model (and alignments):
>> Ribosomal_L18  Ribosomal protein 60S L18 and 50S L18e
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  262.3   0.3     2e-82   1.8e-78       1     186 [.       2     188 ..       2     189 .] 0.97

  Alignments for each domain:
  == domain 1  score: 262.3 bits;  conditional E-value: 2e-82
  Ribosomal_L18   1 gidlkekkk.kkskrkapksenvylklLvklyrfLarRtdskFnkvvlkrLfmsrinrpplslsrlvkkvkkkeeekkiavvvgtvtdDvrllevP 95 
                    gid+++++  kk  r+ap sen yl+lLvklyrfLarRt+++ nkv+lkrLf+sr+nrpp+sl+ ++k++ ++   +kiav+vg+vtd+vr +++P
     KOO21439.1   2 GIDIRHNNYrKKGGRHAPVSENLYLRLLVKLYRFLARRTGADANKVILKRLFTSRVNRPPISLKTVAKHLGDS---GKIAVIVGSVTDEVRTFDCP 94 
                    89**99977699*********************************************************9976...8******************* PP

  Ribosomal_L18  96 klsvaALrftetararilkaGGeiltlDqLalraPtGkntvLlrGkkkareavkhfga...apgvphshkkpyvrskgrkfekargrrksrgfk 186
                    +++v+ALrft+tara++lkaGG +lt+DqLal+aP G+n++LlrG k+ re+ khf+a   apg+ph +++pyvr+kgrkfekarg+r+srg++
     KOO21439.1  95 AMTVCALRFTNTARAKLLKAGGTCLTFDQLALKAPLGENCMLLRGCKSHRESAKHFSAkygAPGTPHGTARPYVRAKGRKFEKARGKRASRGYR 188
                    ********************************************************987889******************************98 PP

>> Ribosomal_L27A  Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.3   0.0   2.8e-06     0.025      71     127 ..      58     119 ..       6     120 .. 0.66

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 2.8e-06
                     ---EEEGGGTTTTSSS....SE.EEE--S.....---.-.-EEEESEE-HHHHHHHHHTT-EEE CS
  Ribosomal_L27A  71 eaeeidleelaeaglikkkdgv.Kvlgkg.....eltkk.lkvkaskfSkkAkekIeaaGGkve 127
                     ++++i+l+++ +++l + + ++  ++g+      ++  + ++v a +f+++A++k  +aGG++ 
      KOO21439.1  58 NRPPISLKTV-AKHLGD-SGKIaVIVGSVtdevrTFDCPaMTVCALRFTNTARAKLLKAGGTCL 119
                     3466666666.333333.3333367777455333445566**********************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (189 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       315  (0.0175693); expected 358.6 (0.02)
Passed bias filter:                      278  (0.0155056); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.38u 0.27s 00:00:00.65 Elapsed: 00:00:00.41
# Mc/sec: 1368.70
//
Query:       KOO21440.1  [L=214]
Description: phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit beta isoform [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    5.8e-10   39.4   0.0    6.3e-05   22.9   0.1    2.2  2  PI3_PI4_kinase  Phosphatidylinositol 3- and 4-kinase


Domain annotation for each model (and alignments):
>> PI3_PI4_kinase  Phosphatidylinositol 3- and 4-kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   0.0   1.1e-06      0.02       8      63 ..       1      52 [.       1      59 [. 0.93
   2 !   22.9   0.1   3.5e-09   6.3e-05     148     179 ..      77     109 ..      55     132 .. 0.82

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 1.1e-06
                    CSSCHHHHHHHHHHHHHHHHHHHHTTTTCCCT-------EEESSSSEEEEE--TTE CS
  PI3_PI4_kinase  8 vgddlrqdelivqvfklmdeelskennpkrrklalktysviplgrkcgiielvass 63
                    +gddlrqd+ ++ +++ m+ ++   + p        ty + p+ ++ g+ie + ++
      KOO21440.1  1 MGDDLRQDQATMLLLREMNAIWADAGAPCF----TCTYDIFPTRDRTGFIEALSNA 52
                    68***************************9....99**************988765 PP

  == domain 2  score: 22.9 bits;  conditional E-value: 3.5e-09
                     HHHHHT-TT--TTTEEEE.TTTSEEEESSTTTC CS
  PI3_PI4_kinase 148 ldyilgngDRhldNilvd.ktsgklihIDfGli 179
                     ++++lg++DRh dN+l+       ++hIDfG+ 
      KOO21440.1  77 AGFVLGLADRHQDNMLLCgPNRELFAHIDFGYV 109
                     789**************745555788*****95 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (214 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       394  (0.0219756); expected 358.6 (0.02)
Passed bias filter:                      367  (0.0204696); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.24s 00:00:00.65 Elapsed: 00:00:00.40
# Mc/sec: 1609.17
//
Query:       KOO21441.1  [L=505]
Description: hypothetical protein Ctob_002984 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
     0.0005   20.5   0.0     0.0008   19.9   0.0    1.4  1  PH        PH domain


Domain annotation for each model (and alignments):
>> PH  PH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.9   0.0   4.5e-08    0.0008       5     102 ..      90     183 ..      75     186 .. 0.69

  Alignments for each domain:
  == domain 1  score: 19.9 bits;  conditional E-value: 4.5e-08
                 EEEEEETSSSSCSEEEEEEEEETTEEEEESSTTCTTESSEEEEEESTTEEEEEEECTTSSSSTSEEEEEESTSSSTEEEEEEESSHHHHHHHHHHHHH CS
          PH   5 GwLlkkgsgkkkswkkrwfvLkdsellyykndksekdkepkgsislsncevvevvatedpkrkfcfelriverngsrtyllqasseeerkeWikaiqs 102
                 G+++++  + +++w++r + L++++++++ n  ++ ++    s+  +  ++++v+a  d++ +   +l+i   ng++t++++a+se er +W++a  +
  KOO21441.1  90 GFVFERNLNLGGGWRHRCMLLQRDRIVWHHNT-EDDAELTYQSLQFDP-TITKVRAGGDSGDDIERCLTIE--NGDQTLVMRAASEGERDMWLRAVGR 183
                 444444444445********************.222222233333333.3333443678888888888888..888******************9866 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (505 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       540  (0.0301188); expected 358.6 (0.02)
Passed bias filter:                      393  (0.0219198); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.55u 0.27s 00:00:00.82 Elapsed: 00:00:00.45
# Mc/sec: 3348.04
//
Query:       KOO21442.1  [L=1005]
Description: helicase mov-10 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.7e-46  157.7   0.0      4e-46  157.1   0.0    1.3  1  AAA_12           AAA domain
    2.6e-28   99.5   0.0    8.4e-14   52.0   0.0    2.3  2  AAA_11           AAA domain
      7e-15   55.3   0.0    1.9e-14   53.8   0.0    1.7  1  AAA_30           AAA domain
    5.4e-10   39.8   0.0    2.8e-09   37.4   0.0    2.2  2  AAA_19           AAA domain
    5.5e-07   29.7   0.0    1.2e-06   28.6   0.0    1.5  1  ResIII           Type III restriction enzyme, res subunit
    2.7e-05   23.7   0.0      0.039   13.4   0.0    2.3  2  PhoH             PhoH-like protein
     0.0001   21.8   0.0    0.00046   19.7   0.0    2.0  2  UvrD_C           UvrD-like helicase C-terminal domain
    0.00064   20.0   0.1     0.0023   18.2   0.1    2.0  1  AAA_22           AAA domain
     0.0014   18.4   0.2     0.0044   16.8   0.0    1.9  2  DUF3410          Domain of unknown function (DUF3410)
     0.0042   16.7   0.0      0.015   14.9   0.0    1.8  2  UvrD-helicase    UvrD/REP helicase N-terminal domain
  ------ inclusion threshold ------
      0.036   13.1   0.0      0.061   12.4   0.0    1.3  1  T2SSE            Type II/IV secretion system protein
       0.04   13.8   0.0       0.13   12.1   0.0    1.9  1  Helicase_RecD    Helicase
      0.056   12.8   0.0        4.4    6.6   0.0    2.3  2  FtsK_SpoIIIE     FtsK/SpoIIIE family
      0.057   13.8   1.1       0.19   12.1   1.0    1.9  2  AAA              ATPase family associated with various cellul
      0.063   12.8   0.0       0.16   11.5   0.0    1.6  1  AAA_25           AAA domain
      0.074   12.8   0.1         17    5.0   0.1    3.2  3  Viral_helicase1  Viral (Superfamily 1) RNA helicase
        0.1   11.8   0.0        7.2    5.7   0.0    2.2  2  PIF1             PIF1-like helicase
        0.1   12.8   0.3        2.3    8.4   0.1    2.5  2  AAA_28           AAA domain
       0.11   12.2   0.0       0.28   10.9   0.0    1.7  1  AAA_24           AAA domain
       0.17   11.5   0.0       0.43   10.2   0.0    1.7  1  SRP54            SRP54-type protein, GTPase domain
        0.2   11.2   0.0       0.34   10.4   0.0    1.3  1  AAA_7            P-loop containing dynein motor region


Domain annotation for each model (and alignments):
>> AAA_12  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  157.1   0.0   4.7e-49     4e-46       2     198 ..     696     907 ..     695     908 .. 0.93

  Alignments for each domain:
  == domain 1  score: 157.1 bits;  conditional E-value: 4.7e-49
      AAA_12   2 erSlferllkke...........kekvvlLdtqYRmhpeIsrfpsklfYkgkLkdaesvkkrele.aqealeepleplvfidvekseeekekkeksyiN 88 
                 ++S +erl+++e           ++  + L  ++R+h+e++++p++lfY+g+L++ ++ + r++  +++ l++p  p++f+ +e++++++ ++  s++N
  KOO21442.1 696 ATSYLERLMSREvyaraagggynPHVLTKLVRNFRSHEELLHLPNELFYEGELEAYADPTLRNCClQWDGLPNPRVPMLFHGIEGKDDREGNS-PSWFN 793
                 679999999999999999**99999999***************************997777776634778999**************999987.***** PP

      AAA_12  89 eeEaelvvklvekllkkgsee.erkkigvitpYraqvellkkklkekeeeksekeievntvdgfQGrekdviilslVRsn.......ekkeigflkder 179
                   Ea  v+++ve+ll+  ++  ++++igvitpY++q++ ++k lk ++       ++v++ + fQG+e++vii+s+VRsn       +k+++gfl++ +
  KOO21442.1 794 ADEAIQVLRYVESLLRMRQNPlQQEHIGVITPYNKQMQKISKLLKGQDLGG----VKVGSTELFQGQERRVIIISTVRSNkdfigfdAKHSLGFLDNPK 888
                 *****************9999999*********************887776....9***********************999999989999******** PP

      AAA_12 180 rlNValTRAkskliivGnk 198
                 r+NValTRA+s liivGn+
  KOO21442.1 889 RFNVALTRACSLLIIVGNP 907
                 *****************97 PP

>> AAA_11  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.0   0.0   9.8e-17   8.4e-14       3     101 ..     498     591 ..     496     608 .. 0.79
   2 !   45.7   0.0   8.3e-15   7.1e-12     183     259 ..     606     686 ..     585     687 .. 0.77

  Alignments for each domain:
  == domain 1  score: 52.0 bits;  conditional E-value: 9.8e-17
      AAA_11   3 ndsqreaiksalsese...itliqGPPGtgKTktivellsqllsrrkseeeksakpriLvCapSNaAvDellerllrglldsegekykpkivRvgnee. 97 
                 nd+q+ a++ +l  ++     ++ GPPGtgKT+t+vel+ q         ++ ++ ++LvCap+N+A D+ +e+l            +++++R ++   
  KOO21442.1 498 NDEQAAAVRAVLLGEKrqvPYIVFGPPGTGKTTTVVELILQF-------VKGFKSSKVLVCAPTNTAADVCCEKLGH----YGAIAGRMEMLRFMSYMr 585
                 99******999988887877789*******************.......4699**********************99....444455566666666663 PP

      AAA_11  98 ..eris 101
                   +++ 
  KOO21442.1 586 hhNEVP 591
                 333444 PP

  == domain 2  score: 45.7 bits;  conditional E-value: 8.3e-15
      AAA_11 183 eaeesleeevldeaeivltTlsgags.klleklakkfdvviIDEAaqavEpstliPl..rlga...kkvvLvGDpkQLpatvi 259
                 +   s+++e l +++iv++Tls  gs  +l   ++ fd+++IDEA+qa+Ep+++     +       ++vL GDpkQL ++++
  KOO21442.1 606 RCYPSVTREDLLKKRIVVATLSMGGSlYNLGVPRGAFDLIVIDEAGQAMEPEAIACVagL--LapdGQMVLSGDPKQLGPVIH 686
                 55556778889999********9987234555555****************977666332..23369*************996 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.8   0.0   2.2e-17   1.9e-14       2     134 ..     497     687 ..     496     698 .. 0.80

  Alignments for each domain:
  == domain 1  score: 53.8 bits;  conditional E-value: 2.2e-17
      AAA_30   2 lnaeQaaavealltsgdrv..avltGpAGtGKttalkal.reaweaa.ggrviglAptgkaAkvLaeelgi........eastiakllkrlk....... 81 
                  n+eQaaav+a+l +++r    ++ Gp+GtGKtt++ +l  + ++     +v+++Apt++aA+v  e+lg         e          l+       
  KOO21442.1 497 ANDEQAAAVRAVLLGEKRQvpYIVFGPPGTGKTTTVVELiLQFVKGFkSSKVLVCAPTNTAADVCCEKLGHygaiagrmE---------MLRfmsymrh 586
                 589********98766554125889********99888746666655569****************99996333222112.........2223334456 PP

      AAA_30  82 .................................................grarlepg..tllivDEagmvdtkqlaallkaaekagakvilvGDerQla 129
                                                                  g   + +g  +l+++DEag +   ++ a ++ + + + +++l GD++Ql+
  KOO21442.1 587 hnevpervrpftqgyddekrcypsvtredllkkrivvatlsmggslynlG---VPRGafDLIVIDEAGQAMEPEAIACVAGLLAPDGQMVLSGDPKQLG 682
                 77999999**************************************8662...333336***********999999999999999************** PP

      AAA_30 130 sVeaG 134
                 +V   
  KOO21442.1 683 PVIHH 687
                 *9664 PP

>> AAA_19  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.4   0.0   3.3e-12   2.8e-09       9     143 ..     514     683 ..     504     686 .. 0.75
   2 ?   -2.2   0.0       5.6   4.8e+03      35      64 ..     808     839 ..     800     904 .. 0.69

  Alignments for each domain:
  == domain 1  score: 37.4 bits;  conditional E-value: 3.3e-12
      AAA_19   9 kekvllvtaGpGtGKTrvlkhivallvelggvkpeeillvaftgrAakelrerlaalgaeatTiHrlal.............................. 77 
                 ++ + +v ++pGtGKT+++++ +  +v+  +    ++l++a+t+ Aa+   e+l  +ga a  +  l +                              
  KOO21442.1 514 RQVPYIVFGPPGTGKTTTVVELILQFVKGFK--SSKVLVCAPTNTAADVCCEKLGHYGAIAGRMEMLRFmsymrhhnevpervrpftqgyddekrcyps 610
                 566899****************999998875..59*******************777777666665544777888888899999999999998888888 PP

      AAA_19  78 ldfddlltealelle........eaeeekklqeee.llivDEfqdvd.elqyrLlkallgekkklllvGDpdQliy 143
                 ++ +dll++   +          + +   +   ++ l+++DE+ +   + + + +  ll ++ +++l GDp+Ql +
  KOO21442.1 611 VTREDLLKKRIVV-AtlsmggslY-NLGVPR-GAFdLIVIDEAGQAMePEAIACVAGLLAPDGQMVLSGDPKQLGP 683
                 4444444333222.1233666542.222222.3346******9666559999*99999999988*********966 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 5.6
      AAA_19  35 velggvkp..eeillvaftgrAakelrerlaa 64 
                 +++++ ++  e+i ++++ ++ ++++++ l++
  KOO21442.1 808 LRMRQNPLqqEHIGVITPYNKQMQKISKLLKG 839
                 44444433337899999999999999988744 PP

>> ResIII  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.6   0.0   1.4e-09   1.2e-06       5     142 ..     498     651 ..     494     676 .. 0.76

  Alignments for each domain:
  == domain 1  score: 28.6 bits;  conditional E-value: 1.4e-09
                 -HHHHHHHHHHT......TTSEEEEEESTTSTHHHHHHHHHHHH-S.....-EEEEESSHHHHHHHHHHG.....................GGGTGG.. CS
      ResIII   5 reyQeeaienlleklkskrdkrglikmaTGtGKTlvaaklierllkkgkeekflflvprkslleqtleef.....................kkflseay 82 
                 ++ Q+ a++++l  l +kr+  +++  + GtGKT + ++li ++ k +k +k+l+ +p+++  +   e++                             
  KOO21442.1 498 NDEQAAAVRAVL--LGEKRQVPYIVFGPPGTGKTTTVVELILQFVKGFKSSKVLVCAPTNTAADVCCEKLghygaiagrmemlrfmsymrhH------- 587
                 6889*******9..4458999***************************************88877776665557777777665444433331....... PP

                 .......GEEEESSS-B--.............-SEEEEEHHHHHHTH........HHHTTT-SEEEEETGG CS
      ResIII  83 ke.....igkkvsgdkkka......kekdstnkkilvttiqsldadseeeeeeseellrdrfdviiiDEaH 142
                  +     +  +++g  +++      +++d  +k+i+v+t ++  +        +    r++fd+i+iDEa 
  KOO21442.1 588 -NevperVRPFTQGYDDEKrcypsvTREDLLKKRIVVATLSMGGSLY------NLGVPRGAFDLIVIDEAG 651
                 .0223332223333333335667777888889999999998776666......999*************95 PP

>> PhoH  PhoH-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.4   0.0   4.6e-05     0.039       5      66 ..     497     566 ..     495     587 .. 0.81
   2 !    7.7   0.0    0.0026       2.2     122     159 ..     644     682 ..     631     702 .. 0.89

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 4.6e-05
                 -SHHHHHHHHHHH...H-SE.EEEE--TTSSTTHHHHHHHHHHHHTTS-SEEEEEE-S--T....T---- CS
        PhoH   5 ktkeQkeylealk...kndi.vfaiGpaGtGKtylavalavealkkkkvkriiltrpavea....geelG 66 
                  + eQ+++++a+    k ++  +++Gp GtGKt   v l ++ +k  k +++++  p+ +a     e+lG
  KOO21442.1 497 ANDEQAAAVRAVLlgeKRQVpYIVFGPPGTGKTTTVVELILQFVKGFKSSKVLVCAPTNTAadvcCEKLG 566
                 5788999999888776444426899****************************99999876555556666 PP

  == domain 2  score: 7.7 bits;  conditional E-value: 0.0026
                 EEEE-SG.GG--HHHHHHHHTTB-TT-EEEEEE------ CS
        PhoH 122 fvilDEA.QnttkeqmkmfltRlGenskvvvtGdvtqid 159
                 ++++DEA Q +++e + ++   l  + ++v+ Gd++q  
  KOO21442.1 644 LIVIDEAgQAMEPEAIACVAGLLAPDGQMVLSGDPKQLG 682
                 699***999***************************975 PP

>> UvrD_C  UvrD-like helicase C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.7   0.0   5.4e-07   0.00046       2     117 ..     724     862 ..     723     877 .. 0.85
   2 ?   -1.2   0.0       1.2     1e+03     331     344 ..     890     903 ..     885     906 .. 0.86

  Alignments for each domain:
  == domain 1  score: 19.7 bits;  conditional E-value: 5.4e-07
                 xxxxxxxxxxxxxxxxxxxxxxxxxx.xxxx.xxx.......................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
      UvrD_C   2 vLekNyRStksLlkaankflenilnr.rale.kek.......................ktvekgekivvleaeteeeEaekiaatikalleknekledi 75 
                 +L +N+RS ++Ll++ n+++ +   +  a+                            k+ ++g++    +a++  +  +++ ++++  + +  ++e i
  KOO21442.1 724 KLVRNFRSHEELLHLPNELFYEGELEaYADPtL-RncclqwdglpnprvpmlfhgiegKDDREGNSPSWFNADEAIQVLRYVESLLRMRQ-NPLQQEHI 820
                 6899****************5554442333332.26899999************999999999999999999999999999999888888.88999*** PP

                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
      UvrD_C  76 avLvRsnkdadkiskaLkkegipfnvvdeekfFkreeikdil 117
                  v++  nk+ +kisk Lk +++  ++v+++++F+ +e + i+
  KOO21442.1 821 GVITPYNKQMQKISKLLKGQDLGGVKVGSTELFQGQERRVII 862
                 **********************************99977665 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 1.2
                 xxxxxxxxxxxxxx RF
      UvrD_C 331 fYVaiTRAkkrLfi 344
                 f Va+TRA + L+i
  KOO21442.1 890 FNVALTRACSLLII 903
                 88*******99998 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.2   0.1   2.7e-06    0.0023       8      56 ..     518     560 ..     512     680 .. 0.77

  Alignments for each domain:
  == domain 1  score: 18.2 bits;  conditional E-value: 2.7e-06
      AAA_22   8 lvvtGesGtGKTtllrrlleqldeeakaeeerpevvfvtlpsstsskdl 56 
                  +v+G++GtGKTt++ +l  q+++       +++ v+v++p  t  +d+
  KOO21442.1 518 YIVFGPPGTGKTTTVVELILQFVKGF-----KSSKVLVCAPTNT-AADV 560
                 79********************8665.....5555555555555.3333 PP

>> DUF3410  Domain of unknown function (DUF3410)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   0.0   5.2e-06    0.0044      11      63 ..      17      68 ..      11      81 .. 0.84
   2 ?   -2.8   0.0       6.4   5.5e+03      34      53 ..      98     116 ..      95     117 .. 0.75

  Alignments for each domain:
  == domain 1  score: 16.8 bits;  conditional E-value: 5.2e-06
                EESTTS-..HHHHHHHHHHH--CHHHHHHHHHCTTCCCHHHHHHHT------GGG CS
     DUF3410 11 sltgkld..eealkklvrlvYDvrrDdalfRrelekakgFdalRknYpeRREfsa 63
                s + ++d   ++l++++r+ YD   +da +R++ e++ +F    k Y+e RE++ 
  KOO21442.1 17 SSEPEPDpeLATLEQVARAFYDCLMEDASLRQRCETRSEFT---KAYNEWREYQR 68
                55555555369*****************************8...68999999876 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 6.4
                 HHHHHHHCTTCCCHHHHHHH CS
     DUF3410  34 DdalfRrelekakgFdalRk 53 
                 D  +f+  + + ++F++lR 
  KOO21442.1  98 DTIKFKP-VGMFQKFEQLRA 116
                 6667776.46999******7 PP

>> UvrD-helicase  UvrD/REP helicase N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.0   1.7e-05     0.015      14      59 ..     516     559 ..     497     606 .. 0.85
   2 ?   -1.3   0.0       1.5   1.3e+03     256     294 ..     641     680 ..     637     681 .. 0.90

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 1.7e-05
                    SEEEEEE-TTSSHHHHHHHHHHHHHHTSSSTGGGEEEEESSHHHHH CS
  UvrD-helicase  14 gpilveAsAGsGKTfvlaerilrlikeeeiepdrilvvTFTnkAae 59 
                     p +v   +G+GKT++++e+il+ +k    + +++lv   Tn Aa+
     KOO21442.1 516 VPYIVFGPPGTGKTTTVVELILQFVKGF--KSSKVLVCAPTNTAAD 559
                    46788999*****************976..99************97 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 1.5
                    HSSEEEESSG.GG-BHHHHHHHHHHHTTTTTEEEEE-GGG CS
  UvrD-helicase 256 rykeiliDEy.QDTnkiQyrilkllasgheelfmvGDpkQ 294
                     ++ i iDE+ Q  ++  ++ +  l +   ++++ GDpkQ
     KOO21442.1 641 AFDLIVIDEAgQAMEPEAIACVAGLLAPDGQMVLSGDPKQ 680
                    6999*****9899999999999999999999********9 PP

>> T2SSE  Type II/IV secretion system protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   7.1e-05     0.061      96     154 ..     481     541 ..     456     553 .. 0.74

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 7.1e-05
       T2SSE  96 Rkksakeltldd..lgaeealkekiaevlrkavrerglilvsGgTgsGKttll.yallkein 154
                 R++ ++e++l +  ++a+ ++++++++vl    +++   +v G+ g+GKtt++   +l++++
  KOO21442.1 481 RQRVSREMRLMNvnVAANDEQAAAVRAVLLGE-KRQVPYIVFGPPGTGKTTTVvELILQFVK 541
                 66677777666511556667778899999988.99999************998455566554 PP

>> Helicase_RecD  Helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   0.00015      0.13       2      48 ..     520     567 ..     519     654 .. 0.76

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 0.00015
  Helicase_RecD   2 ltAdRGRGKSaalGlalaaliaegk.snilvtapskenvktlfeflak 48 
                    + + +G+GK++++  ++ ++++  k s++lv+ap++++++   e l +
     KOO21442.1 520 VFGPPGTGKTTTVVELILQFVKGFKsSKVLVCAPTNTAADVCCEKLGH 567
                    56789******9999988888876669***********9999888754 PP

>> FtsK_SpoIIIE  FtsK/SpoIIIE family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6   0.0    0.0052       4.4      38      65 ..     516     541 ..     492     599 .. 0.77
   2 ?    3.8   0.0     0.037        32     101     143 ..     793     835 ..     786     871 .. 0.77

  Alignments for each domain:
  == domain 1  score: 6.6 bits;  conditional E-value: 0.0052
                   S-.SEEEE--TTSSHHHHHHHHHHHHHT CS
  FtsK_SpoIIIE  38 mashllvaGatgsGKStalntLilSlat 65 
                   ++   +v G +g+GK+t++  Lil  + 
    KOO21442.1 516 VP--YIVFGPPGTGKTTTVVELILQFVK 541
                   55..79*****************97665 PP

  == domain 2  score: 3.8 bits;  conditional E-value: 0.037
                   SHHHHHHHHHHHHHHHHHHHHHHHHTT-SSHHHHHHHHHHHHH CS
  FtsK_SpoIIIE 101 dperalraleeLvkemeeryalfreagvrsiaaydgeiaedpl 143
                   ++++a+++l+ ++++++ r++ ++++ +  i+ y++++++  +
    KOO21442.1 793 NADEAIQVLRYVESLLRMRQNPLQQEHIGVITPYNKQMQKISK 835
                   678999***************************9999987554 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   1.0   0.00023      0.19       2      19 ..     519     536 ..     518     552 .. 0.82
   2 ?    0.1   0.0       1.2     1e+03      85     112 ..     532     557 ..     531     566 .. 0.85

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 0.00023
                 EEESSTTSSHHHHHHHHH CS
         AAA   2 llyGppGtGKTllakava 19 
                 +++GppGtGKT+++  ++
  KOO21442.1 519 IVFGPPGTGKTTTVVELI 536
                 789********9987665 PP

  == domain 2  score: 0.1 bits;  conditional E-value: 1.2
                 HHHHHHHHHHHTTTSSSTEEEEEEESSG CS
         AAA  85 vvnqLlteldgvkkkeskvivigatnrp 112
                 vv+ +l++++g+k+  skv+v++ tn+ 
  KOO21442.1 532 VVELILQFVKGFKS--SKVLVCAPTNTA 557
                 788899********..59********85 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   0.00019      0.16       5      60 ..     488     542 ..     485     556 .. 0.73

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.00019
      AAA_25   5 lelsavsvadlaapppprrwlvkgllpagelallaGapgtGKttlaldlalavatG 60 
                 ++l++v va+ + + + +r ++ g   ++   +++G+pgtGKtt +++l l  ++G
  KOO21442.1 488 MRLMNVNVAANDEQAAAVRAVLLGE-KRQVPYIVFGPPGTGKTTTVVELILQFVKG 542
                 5566666666555444444444444.478889****************99987765 PP

>> Viral_helicase1  Viral (Superfamily 1) RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.0   0.1      0.02        17       2      21 ..     519     538 ..     518     562 .. 0.78
   2 ?    1.2   0.0       0.3   2.5e+02      61     102 ..     640     683 ..     631     711 .. 0.72
   3 ?    2.1   0.0      0.16   1.4e+02     214     233 ..     885     904 ..     807     905 .. 0.79

  Alignments for each domain:
  == domain 1  score: 5.0 bits;  conditional E-value: 0.02
  Viral_helicase1   2 vvhGvpGcGKStlirkllrt 21 
                      +v G pG GK+t +++l+ +
       KOO21442.1 519 IVFGPPGTGKTTTVVELILQ 538
                      78999***********9977 PP

  == domain 2  score: 1.2 bits;  conditional E-value: 0.3
  Viral_helicase1  61 tkgkililDEylllhaGyill.laalskak.lvilfGDplQipf 102
                        ++++++DE++++   +  + +a l   + + +l GDp+Q + 
       KOO21442.1 640 GAFDLIVIDEAGQAMEPEAIAcVAGLLAPDgQMVLSGDPKQLGP 683
                      4588999***99987666666455555554378999*****875 PP

  == domain 3  score: 2.1 bits;  conditional E-value: 0.16
  Viral_helicase1 214 esrenllvAlTRhrkslvil 233
                      +++  + vAlTR+ + l+i+
       KOO21442.1 885 DNPKRFNVALTRACSLLIIV 904
                      6799999********99996 PP

>> PIF1  PIF1-like helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.7   0.0    0.0084       7.2       3      63 ..     498     558 ..     496     563 .. 0.74
   2 ?    3.8   0.0     0.032        27     143     161 ..     671     689 ..     669     701 .. 0.84

  Alignments for each domain:
  == domain 1  score: 5.7 bits;  conditional E-value: 0.0084
                 -HHHHHHHHHH......HCTS-EE.EEESTTSSCHH.HHHHHHHHCHC.TCCCEEEEESSHHHH CS
        PIF1   3 neeQkkvfdaiieavlnekgklfF.vtGsgGtgKtf.lwkallkklrs.egkivlavAssGvAa 63 
                 n+eQ+++++a++   l ek ++ + v G  GtgKt  + + +l+++++ + ++vl+ A +  Aa
  KOO21442.1 498 NDEQAAAVRAVL---LGEKRQVPYiVFGPPGTGKTTtVVELILQFVKGfKSSKVLVCAPTNTAA 558
                 789999999994...444444433266*******8725566677788788899***99998887 PP

  == domain 2  score: 3.8 bits;  conditional E-value: 0.032
                 EEEEE--TTS-----SSSS CS
        PIF1 143 tvvlgGDfrQilPviekgs 161
                 ++vl GD +Q+ Pvi++g 
  KOO21442.1 671 QMVLSGDPKQLGPVIHHGL 689
                 68*************9885 PP

>> AAA_28  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.4   0.1    0.0027       2.3       3      19 ..     519     535 ..     517     548 .. 0.88
   2 ?    1.5   0.0      0.37   3.1e+02      87     121 ..     708     744 ..     702     758 .. 0.83

  Alignments for each domain:
  == domain 1  score: 8.4 bits;  conditional E-value: 0.0027
      AAA_28   3 vitGgestGKTtlleaL 19 
                 +++G+++tGKTt++ +L
  KOO21442.1 519 IVFGPPGTGKTTTVVEL 535
                 789**********9877 PP

  == domain 2  score: 1.5 bits;  conditional E-value: 0.37
      AAA_28  87 aYarayggeaeae.leaaarekrydl.vfllppapei 121
                 +Yara gg ++++ l++ +r  r +   ++lp++ ++
  KOO21442.1 708 VYARAAGGGYNPHvLTKLVRNFRSHEeLLHLPNELFY 744
                 8********888857889999999888****997655 PP

>> AAA_24  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   0.00033      0.28       5      38 ..     518     549 ..     514     659 .. 0.77

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00033
      AAA_24   5 iliyGpsgiGKTtlakelgpkplfidtekGlksl 38 
                 ++++Gp+g+GKTt++ el     f+  +k++k l
  KOO21442.1 518 YIVFGPPGTGKTTTVVEL--ILQFVKGFKSSKVL 549
                 579************999..44444444544444 PP

>> SRP54  SRP54-type protein, GTPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.0    0.0005      0.43       4      42 ..     518     557 ..     515     577 .. 0.82

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.0005
                 EEEEESTTSSHHHHHHHHHHHHHHT.TS-EEEEEESTSST CS
       SRP54   4 illvGlqGaGKTttlaKLaallkke.gkkvllvaaDtfRa 42 
                 ++++G+ G+GKTtt+  L  ++ k  + + +lv+a t  a
  KOO21442.1 518 YIVFGPPGTGKTTTVVELILQFVKGfKSSKVLVCAPTNTA 557
                 5789***************999999888888888766555 PP

>> AAA_7  P-loop containing dynein motor region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.0   0.00039      0.34      31      63 ..     513     544 ..     483     560 .. 0.71

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00039
       AAA_7  31 knkkpvllvGptGtGKtviikdllkkldkekyl 63 
                 k++ p ++ Gp GtGKt+++ +l+ ++  + ++
  KOO21442.1 513 KRQVPYIVFGPPGTGKTTTVVELILQFV-KGFK 544
                 567899**************99665554.3444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1005 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       589  (0.0328518); expected 358.6 (0.02)
Passed bias filter:                      551  (0.0307323); expected 358.6 (0.02)
Passed Vit filter:                        87  (0.00485247); expected 17.9 (0.001)
Passed Fwd filter:                        21  (0.00117129); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              21  [number of targets reported over threshold]
# CPU time: 0.81u 0.30s 00:00:01.11 Elapsed: 00:00:00.45
# Mc/sec: 6684.01
//
Query:       KOO21443.1  [L=326]
Description: transcription factor nf-y ccaat-binding-like protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.3e-09   37.4   0.0    4.2e-09   36.6   0.0    1.4  1  CBFD_NFYB_HMF  Histone-like transcription factor (CBF/NF-Y) a
    1.3e-07   31.5  21.1    3.2e-07   30.3  21.1    1.7  1  zf-CXXC        CXXC zinc finger domain


Domain annotation for each model (and alignments):
>> CBFD_NFYB_HMF  Histone-like transcription factor (CBF/NF-Y) and archaeal histone
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.6   0.0   4.7e-13   4.2e-09       2      65 .]      50     115 ..      49     115 .. 0.93

  Alignments for each domain:
  == domain 1  score: 36.6 bits;  conditional E-value: 4.7e-13
                    XXXHHHHHHHHHCC.TTXS-.B-HHHHHHHHHHHHHHHHHHHHHHHHHHCCTTSSCE-HHHHHHHH CS
  CBFD_NFYB_HMF   2 eLPiarvkkImksd.pdark.iakdAkeliaecveefieelaseAaeickkekrKtikaehiklAv 65 
                     LP++ ++ Imk +  +++  i++ +  ++++c++ef++ + seA  ++ ke+r  +++ +i+ A+
     KOO21443.1  50 LLPVTSIRHIMKRAlGGEQDaITDPSVSVVQRCTTEFVSLVVSEARVRVAKEGRTSVTYSDIATAL 115
                    69************8555557******************************************997 PP

>> zf-CXXC  CXXC zinc finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.3  21.1   3.6e-11   3.2e-07       3      48 .]     188     238 ..     186     238 .. 0.81

  Alignments for each domain:
  == domain 1  score: 30.3 bits;  conditional E-value: 3.6e-11
                 XXX-B--SSSTTTTS--.BS-SCCCCTSCCCTS-S-......S---BGGG-- CS
     zf-CXXC   3 lkkrkrCgeCeaCqrtedCgkCsaCrdkkkfggpgk......kkqkCrkRrC 48 
                 +++++ Cg+CeaC+r++ Cg+C +Crdk+kfgg g       +k+ C  R+C
  KOO21443.1 188 VRRQVACGQCEACCRDD-CGTCLNCRDKPKFGGGGArsadgvRKKPCLERKC 238
                 78999**********99.**************97641222226778999999 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (326 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       670  (0.0373696); expected 358.6 (0.02)
Passed bias filter:                      306  (0.0170673); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.46u 0.26s 00:00:00.72 Elapsed: 00:00:00.43
# Mc/sec: 2293.91
//
Query:       KOO21444.1  [L=1113]
Description: myosin-like protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
     5e-195  649.6   0.0   6.5e-195  649.2   0.0    1.1  1  Myosin_head  Myosin head (motor domain)
      0.001   19.5   0.0     0.0097   16.3   0.0    2.5  2  AAA_16       AAA ATPase domain
  ------ inclusion threshold ------
      0.023   14.0   0.0      0.063   12.5   0.0    1.7  1  Zeta_toxin   Zeta toxin
       0.23   11.7   4.6        1.3    9.3   0.3    3.1  3  GAD          GAD domain


Domain annotation for each model (and alignments):
>> Myosin_head  Myosin head (motor domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  649.2   0.0  1.5e-198  6.5e-195       2     677 .]      70     743 ..      69     743 .. 0.95

  Alignments for each domain:
  == domain 1  score: 649.2 bits;  conditional E-value: 1.5e-198
                  SBGCGSSS-SHHHHHHHHHHHHHTT--EEEETTEEEEE--SS--S.TSSHHHHHHHTTS-..GGGSSSSHHHHHHHHHHHHHHHTSEEEEEEESSTTS CS
  Myosin_head   2 edlveLsllneasvlenlkkRykkdliYtysglvlvavnPykklk.iysedvikaykgkk..reelpPHifaiadeayrslledkenqsilisGEsGA 96 
                   d ++L +l++a++l n k+Ry+ d+iYt++g +lva+nP+k ++ +y+ d + + k     + + p H f++a+ ay +l ++k+ qs+++sGEsGA
   KOO21444.1  70 SDHTALLHLSDATLLANSKERYALDEIYTFVGPILVAINPFKYIErLYTPDLMGKAKKYPvgHPDRPAHTFSMAEAAYMQLIKQKKPQSLVVSGESGA 167
                  58899***********************************************988877653367899******************************* PP

                  SHHHHHHHHHHHHHHHSSSSSCTCTTHHHHHHHHHHHHHHHHHEEEESSETTEESSEEEEEEEEETTSSEEEEEEEEECE-GGGGT--.-TT--SBHH CS
  Myosin_head  97 GKteatKkvlqylasvaeskekveeeeleekilqsnPilEafGnAktvrndnssRFGKfieiefdakgkiagakietYLLEksRvvkq.akeERnyHi 193
                  GKte  K+ ++yl   a  ++    + l ++il+snP+lEa+GnAktvrn+nssRFGKf+ ++f+ + +++ga+++t+LLEksRvv   a++ERnyHi
   KOO21444.1 168 GKTEVNKQCMNYLVWRACDES----SDLATRILESNPVLEALGNAKTVRNNNSSRFGKFVTMRFNDRHRLVGAEVQTFLLEKSRVVATtASGERNYHI 261
                  *************98776666....69**********************************************************9762679****** PP

                  HHHHHHCSTHHHHHHTT--TCCGSTTTTTTSSSSBTTS-HHHHHHHHHHHHHHHT--HHHHHHHHHHHHHHHHHCTSSEEEECTTSSEEESSHHHHHH CS
  Myosin_head 194 FYqllagaseeekkelkledvkdyaylsqsgeltvdgiddseefketkkaldilglseeeqkeifrivaailhlGniefkkeakdeqavledeeklek 291
                  FY++l ga+      l  ++++  + l++sg+lt++ ++d+ee+  +++al  +g+s +e++e+ ++vaail lGn++f +e++d+++ +++ +  + 
   KOO21444.1 262 FYHVLCGARL-----LPSSEPEWARLLKRSGCLTIPHVNDQEEYGGLVNALRNIGVSVTENREVQELVAAILALGNLTFGDEDNDAASYISEPDVCTL 354
                  *******974.....55568888899************************************************************999999999*** PP

                  HHHHHTS-HHHHHHHHHSEEEEET.TEEEEEE-BHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSS-S-SEEEEEEEEE-B---SSB-HHHHHHH CS
  Myosin_head 292 aaellgvdaeelekalvkrriktg.kevvskalnveqaevardalakaiyerlFdwlverinkslekkkeekksfiGvLDiaGFEifeknsFEqlcin 388
                  aa+llg++a+++e al+k ++k+  +e ++ +++ ++a   rda+ k+iy+rlFd+lv rin+sl +       fiG+LD++GFEife+ sFEqlcin
   KOO21444.1 355 AASLLGTSASDMEAALLKATLKVSkTESYTIEQDPKKAVLGRDAFCKTIYQRLFDYLVVRINESLGTALAPGLDFIGLLDVFGFEIFEVISFEQLCIN 452
                  *********************9975899********************************************************************** PP

                  HHHHHHHHHHHHHHCHHHHHHHHHTTSSGCGS-GGGCCHHHHHHHHSSSTSHHHHHHHHHTSTTS-HHHHHHHHHHHHTTSTTEEETTS......... CS
  Myosin_head 389 yvnEkLqqlFnelvlklEqeeYvrEgiewkfidfgldnqaiidLiekkplGilslLdeecllpkatdetfleklvkafskhakfeksrl......... 477
                  ++nEkLq++F + v+k+E   Y+++gi+w+ i++ +dn aii++ e k++Gi+  Ld  c+ pkatdet+++ l++++++++ + +++          
   KOO21444.1 453 FANEKLQNFFLRAVFKAEELAYKNDGIRWEAITY-TDNSAIIEVCEGKDKGIFPALDSVCKAPKATDETLATTLHENHARTKILCRPKAggggkgaak 549
                  **********************************.8************************************************9*99999****999 PP

                  .TTTTTEEEEEETTCEEEEE-TTHHHHHH----HHHHHHHHTSSSHHHHHHCCSHCHB--.........CSSSECCCCCSBHHHHHHHHHHHHHHHHC CS
  Myosin_head 478 .kkgeakFiikHyAgkveYevegfleKnkDtlnedlvellksskkkllaelfkeeekeakaeakksekkkkkkkkkkkfktvgskfkeslaeLmktle 574
                     ++++F++kH+Ag+v+Y+v g+l+Kn+D+l+ed ++ l++skk l+++   ++++    +ak s++ + +++k + ++tv++ f  sl++L+++le
   KOO21444.1 550 gLSDKEAFVLKHFAGDVTYSVLGWLDKNNDKLSEDYEKFLTKSKKVLIRDFIAKKDE----DAKGSKAGAGAANKPQVQQTVSKGFLGSLKKLLDALE 643
                  9899**********************************************9999665....5556666777777788889****************** PP

                  TSEEEEEEEE-SSSS--TT---HHHHHHHHHHTTHHHHHHHHHHSSSEEEEHHHHHHHHGGGSTTSS-SS.SSSHHHHHHHHHHHTTS-GCGEEECSS CS
  Myosin_head 575 stnphfvRCikpnekkkakkldeslvleqlrclGvlegirirraGfpnRitfeefvqrYkllakkelkkllkedakkaveailkeleldkeeykiGkt 672
                  st++hf+RCikpn++ k++ l  + vl+ql+c+G+le+++++++Gfp+Ri ++++ +rYk  +++ ++ l      ++veai  +  l+ke+y++G  
   KOO21444.1 644 STDAHFIRCIKPNNELKPNLLYGAFVLTQLKCSGTLEAVELMQRGFPSRIPYASIHERYKSFMPDFVQAL---PPSEFVEAIALAYGLTKEDYQLGMY 738
                  *****************************************************************98544...899********************** PP

                  EEEET CS
  Myosin_head 673 KiFfr 677
                  KiF+r
   KOO21444.1 739 KIFMR 743
                  ***98 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.0   2.2e-06    0.0097      18     131 ..     150     253 ..     142     264 .. 0.76
   2 ?   -1.1   0.0      0.49   2.2e+03      56     137 ..     570     649 ..     557     653 .. 0.51

  Alignments for each domain:
  == domain 1  score: 16.3 bits;  conditional E-value: 2.2e-06
      AAA_16  18 rvrsgrpelvllsGesGvGKsslvrellralekdggiflrgkcdqlesaipysa.laqalareellrqllde..aesaeleawrekleealaavpelag 113
                  +++  p+++++sGesG GK+ + +++++       ++++  cd++      s   +++l+ + +l++l+++   ++++ +++ ++ + ++++   l g
  KOO21444.1 150 LIKQKKPQSLVVSGESGAGKTEVNKQCMN-------YLVWRACDES------SDlATRILESNPVLEALGNAktVRNNNSSRFGKFVTMRFNDRHRLVG 235
                 55677889********************6.......5578899999......77788999999999999998665666777777777777777777777 PP

      AAA_16 114 aeasrllellkrllalls 131
                 ae + +l + +r +a ++
  KOO21444.1 236 AEVQTFLLEKSRVVATTA 253
                 777777777776665555 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 0.49
      AAA_16  56 lrgkcdql..esaipysalaqalareellrqlldeaesaeleawrekleealaavpelagaeasrllellkrll.allsrderpl 137
                 + g+ d++  + +  y  +++  ++  l+r+  ++++  e +  +++  +a++  p++    ++ +l  lk+ll al s+d++ +
  KOO21444.1 570 VLGWLDKNndKLSEDYEKFLTKSKK-VLIRDFIAKKD--EDAKGSKAGAGAAN-KPQVQQTVSKGFLGSLKKLLdALESTDAH-F 649
                 5666666622222334556666634.66666666622..23333333333333.44444444589999999999666666555.4 PP

>> Zeta_toxin  Zeta toxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   1.4e-05     0.063      11      36 ..     151     176 ..     143     183 .. 0.85

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 1.4e-05
  Zeta_toxin  11 psqerPklillgGqpGAGKselaell 36 
                 ++q++P +++++G +GAGK+e+ +  
  KOO21444.1 151 IKQKKPQSLVVSGESGAGKTEVNKQC 176
                 579******************98765 PP

>> GAD  GAD domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3   0.3    0.0003       1.3      17      80 ..     545     608 ..     544     610 .. 0.93
   2 ?   -2.5   0.2       1.4   6.4e+03      25      41 ..     792     808 ..     778     861 .. 0.55
   3 ?    2.7   0.0     0.034   1.5e+02      13      34 ..     896     917 ..     889     925 .. 0.85

  Alignments for each domain:
  == domain 1  score: 9.3 bits;  conditional E-value: 0.0003
                 TTG-TTTSHHHHHHHHHHHHHTTHSHCEEEEESSGGEETTTCCCS-HHHHHHHHHHCT--TTEE CS
         GAD  17 pggaaklsrkeideleefakelgakglawikvegegltgpiakflteeevkklleavgaeegDi 80 
                 +g+a++ls ke   l+ fa       l w+  ++++l++   kflt+ ++  +++ +  +++D+
  KOO21444.1 545 KGAAKGLSDKEAFVLKHFAGDVTYSVLGWLDKNNDKLSEDYEKFLTKSKKVLIRDFIAKKDEDA 608
                 68899***************************************99999999999988888886 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 1.4
                 HHHHHHHHHHHHHTTHS CS
         GAD  25 rkeideleefakelgak 41 
                 r++i++l++f  +  a+
  KOO21444.1 792 RRRIKKLKQFRDRERAR 808
                 55555555554433333 PP

  == domain 3  score: 2.7 bits;  conditional E-value: 0.034
                 EEEETTG-TTTSHHHHHHHHHH CS
         GAD  13 alrvpggaaklsrkeideleef 34 
                  +++p+ga+++++++i+e+++ 
  KOO21444.1 896 TINIPQGAKSIIKQAIEEYKQT 917
                 699****************975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1113 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       816  (0.0455129); expected 358.6 (0.02)
Passed bias filter:                      476  (0.0265492); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.81u 0.30s 00:00:01.11 Elapsed: 00:00:00.47
# Mc/sec: 7156.02
//
Query:       KOO21445.1  [L=209]
Description: hypothetical protein Ctob_007743 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.5e-11   41.5   1.6    0.00017   20.9   0.8    2.5  2  EF-hand_1  EF hand
    2.8e-08   33.0   2.1    0.00087   19.0   0.0    2.4  2  EF-hand_6  EF-hand domain
      2e-07   31.3   0.4    3.2e-07   30.7   0.4    1.4  1  EF-hand_7  EF-hand domain pair
    9.5e-06   24.9   0.6        0.1   12.1   0.0    2.5  2  EF-hand_5  EF hand
    2.6e-05   24.0   0.6    6.8e-05   22.6   0.2    1.8  2  EF-hand_8  EF-hand domain pair
    0.00051   20.0   0.4     0.0011   18.9   0.4    1.6  1  EF-hand_4  Cytoskeletal-regulatory complex EF hand


Domain annotation for each model (and alignments):
>> EF-hand_1  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.1   0.0   2.2e-07   0.00064       2      28 ..       8      34 ..       7      35 .. 0.93
   2 !   20.9   0.8   5.7e-08   0.00017       2      27 ..      45      70 ..      44      72 .. 0.92

  Alignments for each domain:
  == domain 1  score: 19.1 bits;  conditional E-value: 2.2e-07
                HHHHHHHHTTTSSSEEEHHHHHHHHHH CS
   EF-hand_1  2 lkeiFrefDkDgdGkIdfeEfkellkk 28
                l+++Fr++D D +G+ d+ E+k +l++
  KOO21445.1  8 LRRVFRKIDADASGQCDRGELKYMLNA 34
                799*********************987 PP

  == domain 2  score: 20.9 bits;  conditional E-value: 5.7e-08
                HHHHHHHHTTTSSSEEEHHHHHHHHH CS
   EF-hand_1  2 lkeiFrefDkDgdGkIdfeEfkellk 27
                ++++++++D DgdG I f+Ef ++++
  KOO21445.1 45 MERMIDLADHDGDGNIRFDEFARVFT 70
                579*******************9987 PP

>> EF-hand_6  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.0   0.0   2.9e-07   0.00087       2      27 ..       8      33 ..       7      37 .. 0.93
   2 !   12.9   0.6   2.7e-05     0.081       7      27 ..      50      70 ..      45      77 .. 0.88

  Alignments for each domain:
  == domain 1  score: 19.0 bits;  conditional E-value: 2.9e-07
   EF-hand_6  2 lreaFklfDkdgdGkidaeElrkalr 27
                lr++F+++D d +G+ d+ El+ +l+
  KOO21445.1  8 LRRVFRKIDADASGQCDRGELKYMLN 33
                89*********************998 PP

  == domain 2  score: 12.9 bits;  conditional E-value: 2.7e-05
   EF-hand_6  7 klfDkdgdGkidaeElrkalr 27
                +l D+dgdG i ++E+ ++++
  KOO21445.1 50 DLADHDGDGNIRFDEFARVFT 70
                688**************9998 PP

>> EF-hand_7  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.7   0.4   1.1e-10   3.2e-07       1      70 [.       5      69 ..       5      70 .. 0.87

  Alignments for each domain:
  == domain 1  score: 30.7 bits;  conditional E-value: 1.1e-10
   EF-hand_7  1 eeklkeaFkelDtdgdgyldkeellrllrkifqgagegsklsdeelellfkefDtdkdGvisfdEFlkly 70
                ++ l+++F+++D d +g  d+ el+ +l ++f      +  +d  +e++++  D+d+dG i fdEF + +
  KOO21445.1  5 FSTLRRVFRKIDADASGQCDRGELKYMLNAMF---NLRV--PDAVMERMIDLADHDGDGNIRFDEFARVF 69
                57899********************9999865...4444..4667999******************9765 PP

>> EF-hand_5  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.1   0.0   3.4e-05       0.1       1      22 [.       8      29 ..       8      32 .. 0.89
   2 !   10.5   0.4   0.00011      0.34       5      24 ..      49      68 ..      45      69 .. 0.85

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 3.4e-05
                HHHHHHHH-SS-SSCE-HHHHH CS
   EF-hand_5  1 lkdtFqaiDlNgDGkIskeELk 22
                l+ +F++iD++ +G+ ++ ELk
  KOO21445.1  8 LRRVFRKIDADASGQCDRGELK 29
                6789***********9999996 PP

  == domain 2  score: 10.5 bits;  conditional E-value: 0.00011
                HHHH-SS-SSCE-HHHHHHH CS
   EF-hand_5  5 FqaiDlNgDGkIskeELktl 24
                 + +D +gDG I ++E+ ++
  KOO21445.1 49 IDLADHDGDGNIRFDEFARV 68
                5789*************985 PP

>> EF-hand_8  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.0   0.0      0.26   7.8e+02      31      41 ..      11      21 ..       7      24 .. 0.86
   2 !   22.6   0.2   2.3e-08   6.8e-05       3      52 ..      21      69 ..      19      71 .. 0.92

  Alignments for each domain:
  == domain 1  score: 0.0 bits;  conditional E-value: 0.26
   EF-hand_8 31 lfrefDtdgdG 41
                +fr++D d +G
  KOO21445.1 11 VFRKIDADASG 21
                69******999 PP

  == domain 2  score: 22.6 bits;  conditional E-value: 2.3e-08
   EF-hand_8  3 gkItreelrril.rilglkkglseeevdilfrefDtdgdGkisfeEFcvll 52
                g+ +r el+ +l +++ l+  + +  ++ +++++D dgdG i f+EF  ++
  KOO21445.1 21 GQCDRGELKYMLnAMFNLR--VPDAVMERMIDLADHDGDGNIRFDEFARVF 69
                77799*******9999***..**************************9776 PP

>> EF-hand_4  Cytoskeletal-regulatory complex EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.9   0.4   3.7e-07    0.0011      34      77 ..      34      79 ..      11      89 .. 0.82

  Alignments for each domain:
  == domain 1  score: 18.9 bits;  conditional E-value: 3.7e-07
   EF-hand_4 34 vlknskleedklekiwdladidedgkldfeefciam..rlifdlvn 77
                 + n ++++  +e++ dlad d dg++ f+ef+ +     if++ n
  KOO21445.1 34 AMFNLRVPDAVMERMIDLADHDGDGNIRFDEFARVFtaDDIFNMKN 79
                56788999************************85440045676665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (209 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       327  (0.0182386); expected 358.6 (0.02)
Passed bias filter:                      295  (0.0164538); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.40u 0.24s 00:00:00.64 Elapsed: 00:00:00.39
# Mc/sec: 1590.33
//
Query:       KOO21446.1  [L=230]
Description: hypothetical protein Ctob_007748 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0064   17.2   0.0      0.011   16.5   0.0    1.3  1  FAM183     FAM183A and FAM183B related
  ------ inclusion threshold ------
      0.017   15.0   0.1         11    6.2   0.0    2.7  2  EF-hand_6  EF-hand domain


Domain annotation for each model (and alignments):
>> FAM183  FAM183A and FAM183B related
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.0   1.2e-06     0.011      62      82 ..     142     162 ..     128     177 .. 0.80

  Alignments for each domain:
  == domain 1  score: 16.5 bits;  conditional E-value: 1.2e-06
      FAM183  62 skeprqkyklPqTesqeiGWf 82 
                   +p+q++ +P+ +sqe+GW 
  KOO21446.1 142 VLNPQQRFRKPIATSQEVGWE 162
                 568*****************7 PP

>> EF-hand_6  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.2   0.0    0.0013        11       9      27 ..      44      62 ..      39      67 .. 0.85
   2 ?    5.9   0.1    0.0016        15      12      27 ..      95     110 ..      86     114 .. 0.88

  Alignments for each domain:
  == domain 1  score: 6.2 bits;  conditional E-value: 0.0013
   EF-hand_6  9 fDkdgdGkidaeElrkalr 27
                + ++++G+++++ + ++lr
  KOO21446.1 44 YSTNNSGFLTKAKVPDFLR 62
                4589********9999998 PP

  == domain 2  score: 5.9 bits;  conditional E-value: 0.0016
   EF-hand_6  12 dgdGkidaeElrkalr 27 
                  +dG+++++ l+ al+
  KOO21446.1  95 GKDGQLTFATLIEALK 110
                 59************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (230 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       313  (0.0174578); expected 358.6 (0.02)
Passed bias filter:                      298  (0.0166211); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.43u 0.25s 00:00:00.68 Elapsed: 00:00:00.43
# Mc/sec: 1615.26
//
Query:       KOO21447.1  [L=335]
Description: hypothetical protein Ctob_007744 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (335 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       396  (0.0220871); expected 358.6 (0.02)
Passed bias filter:                      371  (0.0206927); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.45u 0.25s 00:00:00.70 Elapsed: 00:00:00.41
# Mc/sec: 2464.72
//
Query:       KOO21448.1  [L=205]
Description: hypothetical protein Ctob_007745 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (205 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       728  (0.0406046); expected 358.6 (0.02)
Passed bias filter:                      513  (0.0286129); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.41u 0.25s 00:00:00.65 Elapsed: 00:00:00.39
# Mc/sec: 1559.04
//
Query:       KOO21449.1  [L=1226]
Description: insulin degrading enzyme [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.6e-78  262.7   0.0    4.1e-45  154.2   0.0    2.2  2  Peptidase_M16_M  Middle or third domain of peptidase_M16
      5e-40  136.9   0.0    1.4e-39  135.4   0.0    1.8  2  Peptidase_M16    Insulinase (Peptidase family M16)
    1.4e-33  116.5   0.0    3.7e-19   69.5   0.0    3.0  3  Peptidase_M16_C  Peptidase M16 inactive domain
  ------ inclusion threshold ------
       0.12   12.3   0.1       0.35   10.7   0.1    1.8  1  PDZ_6            PDZ domain
        0.2   11.7   2.2       0.41   10.7   2.2    1.5  1  PRIMA1           Proline-rich membrane anchor 1


Domain annotation for each model (and alignments):
>> Peptidase_M16_M  Middle or third domain of peptidase_M16
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  106.3   0.0   4.7e-34   1.7e-30       1     114 [.     451     571 ..     451     590 .. 0.90
   2 !  154.2   0.0   1.2e-48   4.1e-45     127     277 ..     758     908 ..     753     910 .. 0.97

  Alignments for each domain:
  == domain 1  score: 106.3 bits;  conditional E-value: 4.7e-34
  Peptidase_M16_M   1 FrFkekeepsdyvsslaenmqkyppedvlsgpylleeydpelikellssLtpenarivlvsk.e.t..dekekwygteYsvekiseelleewks 90 
                      FrF++  eps+ v+ la ++q  pp+ + s pyl++e++p+li++ll  +tp++a +  vs+ +    +++e+wygt Y+ ++is++ll++w++
       KOO21449.1 451 FRFRDVVEPSSLVMALAASLQLHPPKLAHSHPYLYDEWRPDLISDLLMLMTPQRATVSHVSRvHeSiaTSRERWYGTMYQRTPISDALLAQWSA 544
                      9*************************************************************5451446************************9 PP

  Peptidase_M16_M  91 aeeneeLhLPepNpFiptdfslk...k 114
                      +  ++eLh+P+pNpFiptdf l    +
       KOO21449.1 545 VPLHPELHFPTPNPFIPTDFALVcdsE 571
                      9999******************95430 PP

  == domain 2  score: 154.2 bits;  conditional E-value: 1.2e-48
  Peptidase_M16_M 127 irdtelvrlWykkDdtFkvPkasvrlklrsplasksprnavltelfvellkdslneylydAelAglsyslssskeglelsvsGYndklpvLlek 220
                       r+ +l +lW+k+D+tF+ Pk+s+++++ sp+++ sp++a lt+lf +ll+d+l+e++y+Ae+Agl+ys+++s++gl lsv GYn+klp Llek
       KOO21449.1 758 TRKADLPKLWHKTDRTFRRPKTSIMMDIASPHSYVSPEAACLTRLFFRLLQDELTEFVYPAECAGLHYSVYNSTSGLRLSVGGYNHKLPALLEK 851
                      5678899*************************************************************************************** PP

  Peptidase_M16_M 221 vleklknfeikedrFevikekllrelknfklekpyqqarellsslleekawtleell 277
                      vl +l++ +++ +rF+v k+ +l+e++nf + +p+ +ar++ s+lle ++w++ e++
       KOO21449.1 852 VLGRLATPTLDASRFQVQKDLQLKEYSNFFKGQPHALARYAASHLLEMSRWHMLEYI 908
                      ******88*******************************************998876 PP

>> Peptidase_M16  Insulinase (Peptidase family M16)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  135.4   0.0     4e-43   1.4e-39       3     148 ..      57     192 ..      55     193 .. 0.98
   2 ?   -3.4   0.0       2.3   8.3e+03      80     119 ..     841     880 ..     817     894 .. 0.70

  Alignments for each domain:
  == domain 1  score: 135.4 bits;  conditional E-value: 4e-43
                    EEEE-TSSSEEEEEEEES-SGGGSCTTTTTHHHHHHHHTTSBBSSSCH.HHHHHHHHHTTCEEEEEEESSEEEEEEEEEGGGHHHHHHHHHHHHHS CS
  Peptidase_M16   3 alesdppaktsavglvvdaGSryepkdlnGlAHllehmafkgTkkyps.nklaeeleklGgslnAttsrentvYyvevlskdlekaldvladvfka 97 
                    +l+sdp+ + +a+   v++GS+++p++l+GlAH+lehm+f+gT+kyp+ n++ ++le++Ggs+nA+t+ ent+Yy++v++  l +ald++a++f +
     KOO21449.1  57 LLVSDPECDHAAACADVAVGSASDPEELPGLAHFLEHMLFLGTAKYPAeNAYQSFLEQHGGSSNAFTQHENTTYYFDVQHPFLLGALDRFAQFFLC 152
                    68899999**************************************************************************************** PP

                    BTTSHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHTTTSGGGSHSS-T CS
  Peptidase_M16  98 plleesevererkvvekeveavdaepekvveenlhaaayrekalgrsllgp 148
                    pl++es++er       e++avd+e      +nl+++a+r ++l ++ ++p
     KOO21449.1 153 PLFSESATER-------EMKAVDSEN----SKNLQSDAWRLQQLFKGAADP 192
                    **********.......*********....***************999887 PP

  == domain 2  score: -3.4 bits;  conditional E-value: 2.3
                    EGGGHHHHHHHHHHHHHSBTTSHHHHHHHHHHHHHHHHHH CS
  Peptidase_M16  80 lskdlekaldvladvfkaplleesevererkvvekeveav 119
                     + +l+ +l+     ++ p+l+ s ++ +++  +ke++ +
     KOO21449.1 841 YNHKLPALLEKVLGRLATPTLDASRFQVQKDLQLKEYSNF 880
                    5666777777777778889999999999998888877665 PP

>> Peptidase_M16_C  Peptidase M16 inactive domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.0       0.8   2.9e+03     103     142 ..      92     133 ..      76     139 .. 0.76
   2 !   69.5   0.0     1e-22   3.7e-19       6     179 ..     268     443 ..     265     446 .. 0.94
   3 !   43.5   0.0   9.3e-15   3.3e-11       5     182 ..     919    1106 ..     915    1107 .. 0.91

  Alignments for each domain:
  == domain 1  score: -1.9 bits;  conditional E-value: 0.8
                      HHHHHSS....TTSHHHHHHHTTTTSESEEEEEEEEESSCEEEE CS
  Peptidase_M16_C 103 ntlLggg....mesrLytnlrekeglaysvsafndsyrdsglfg 142
                      +++L  g    +    y+  +e++g   +++  + +++  ++f 
       KOO21449.1  92 EHMLFLGtakyPAENAYQSFLEQHGGSSNAFTQHENTT--YYFD 133
                      4444444488888889999**9***9999888887666..6665 PP

  == domain 2  score: 69.5 bits;  conditional E-value: 1e-22
                      HHHHHHHHHSSGGGEEEEEEESS-HHHHHHHHHHHHTTSTHHSHCSGSCTSSSSSGGGSSEEEEEEEESSSSSEEEEEEEEEECTCTHTTHHHH CS
  Peptidase_M16_C   6 dlkefykkfYrpenmvlaivGdvdheelvkliekyfgdlkaskappakptgepltpatlkkppvvlkkldeeqahlslafegpskendeddlal 99 
                       l +f+ ++Y+++ m++ai G    ++l +++  +f +++  k p +k  +ep++   l+    +++ ++  +++l++++ +p+++ + ++ ++
       KOO21449.1 268 TLIDFHSRHYSANLMTVAILGRECLDTLAQWAVPLFATVPDQKLPRPKFDVEPYPLSRLNNYYRIVPVKN--FSSLTVTWALPPITEQVHSKPF 359
                      588*************************************999999999999999888888888888888..********************** PP

                      HHHHHHHHSSTTSHHHHHHHTTTTSESEEEEE.EEEESSCEEEEEEEEEECT...THHHHHHHHHHHHHHHHHH.TS-HHHHHHH CS
  Peptidase_M16_C 100 avlntlLgggmesrLytnlrekeglaysvsaf.ndsyrdsglfgisatadpe...nveevvevilkelrklkke.glteeelera 179
                       + ++lLg++ e++L + l+ ++g+a++ +a+ ++s +d   f +++ +++e   +v+e++ +i++++r ++ e +++++ +++ 
       KOO21449.1 360 RYVSHLLGHESEGSLLSLLK-NKGWADQLMAGeSRSHSDFACFDVTIELTDEadaHVDEIIGLIFAYIRLIAAEpEPQRWVFDEM 443
                      ********************.***************************************************9966777777765 PP

  == domain 3  score: 43.5 bits;  conditional E-value: 9.3e-15
                       HHHHHHHHHHSSGGGEEEEEEESS-HHHHHHHHHHHHTTSTHHSH.............CSGSCTSSSSSGGGSSEEEEEEEESSSSSEEEEE CS
  Peptidase_M16_C    5 edlkefykkfYrpenmvlaivGdvdheelvkliekyfgdlkaska.............ppakptgepltpatlkkppvvlkkldeeqahlsl 83  
                        +l +f  +     +m +  +G+ ++ e+++l+e+    lk+ +              p     + +l p  ++ ++  l ++  +++ +++
       KOO21449.1  919 ASLAAFTPRLLERIHMNVLCHGNTSQAEAKALVEQAAEVLKSGPLrtsqrpmlrllqlPADVEVVLRLHPSLYSDSERSLLNTADTNSAVEF 1010
                       67888899999999********************99999997777999********99888888899999999999999999988******* PP

                       EEEEECTCTHTTHHHHHHHHHHHHSSTTSHHHHHHHTTTTSESEEEEEEEEESSCEEEEEEEEEECT.....THHHHHHHHHHHHHHHHHHT CS
  Peptidase_M16_C   84 afegpskendeddlalavlntlLgggmesrLytnlrekeglaysvsafndsyrdsglfgisatadpe.....nveevvevilkelrklkkeg 170 
                       ++++    + +d + l++l ++L +     +y +lr+ke+l+y v+++++++   g++g+ + +++      +++ ++e++++ + +l ++ 
       KOO21449.1 1011 TLQAGLD-KRPDTITLELLVQILANP----CYEQLRTKEQLGYIVNLGLRIDL--GVTGLRVIVQSAthdaaHLDARIELFMAGVPMLLDK- 1094
                       ***9999.******************....********************999..888888888888777889999**************9. PP

                       S-HHHHHHHHHH CS
  Peptidase_M16_C  171 lteeeleraknq 182 
                       lt ee+  ++++
       KOO21449.1 1095 LTAEEFGNHRSA 1106
                       *****9887766 PP

>> PDZ_6  PDZ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.1   9.8e-05      0.35      16      55 ..     722     758 ..     718     759 .. 0.86

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 9.8e-05
       PDZ_6  16 lrvGDiilsvNGqpveglsladvaallrgsagesvvlvvr 55 
                 l +GD++ +++G+ v   ++++ aa lr  a+  ++l v 
  KOO21449.1 722 LAQGDVVHEIDGRAV--SQPNEGAAVLR-VAHGTIRLNVT 758
                 789************..***********.77777777765 PP

>> PRIMA1  Proline-rich membrane anchor 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   2.2   0.00011      0.41      25      50 ..     662     687 ..     644     706 .. 0.74

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00011
      PRIMA1  25 rypplpppppppppprllsltaaest 50 
                 + pp   pppppp  +ll lt +++ 
  KOO21449.1 662 AIPPPHMPPPPPPCAQLLELTKPKPE 687
                 4577777888999999*999999875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1226 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       512  (0.0285571); expected 358.6 (0.02)
Passed bias filter:                      389  (0.0216967); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.81u 0.30s 00:00:01.11 Elapsed: 00:00:00.47
# Mc/sec: 7815.22
//
Query:       KOO21450.1  [L=455]
Description: upf0029-domain-containing protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.4e-18   65.9   0.1    6.2e-18   65.1   0.1    1.4  1  UPF0029   Uncharacterized protein family UPF0029
  ------ inclusion threshold ------
          3    8.4  11.0        6.5    7.3  11.0    1.5  1  SVIP      Small VCP/p97-interacting protein


Domain annotation for each model (and alignments):
>> UPF0029  Uncharacterized protein family UPF0029
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.1   0.1     7e-22   6.2e-18       8     104 ..     272     369 ..     270     370 .. 0.92

  Alignments for each domain:
  == domain 1  score: 65.1 bits;  conditional E-value: 7e-22
                 EEEE-SSHHHHHHHHHHH--..TT..SSEEEEEE....EE....TTEE-TTSSTSHHHHHHHHHHTTB-SEEEEEEEE--SS--HHHHHHHHHHHHHHH CS
     UPF0029   8 vlaaveseeevkaileelkkenkk..athniyAyrlrqkvekvnedsdddgEpaAGkkllelLekeklenvlvvvtRwfGGikLGpgrlraiseaarea 104
                 v+++v+s + ++a++  ++ e     a  n++A+r+r+   k+++ +dddgE++ G++l+ +L++ k+++v+v+v+R++GG +LG+ r+ +i +aa+ +
  KOO21450.1 272 VVWPVRSVAAAHAAIVLMRGEGDAagADNNMTAFRVREAG-KLQKAYDDDGEANGGQRLMGCLTRLKATDVAVMVSRVYGGQNLGKVRFDHICSAAEAL 369
                 578999999999999977776666889*******999988.59999************************************************99876 PP

>> SVIP  Small VCP/p97-interacting protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.3  11.0   0.00072       6.5      16      40 ..     428     452 ..     416     453 .. 0.80

  Alignments for each domain:
  == domain 1  score: 7.3 bits;  conditional E-value: 0.00072
        SVIP  16 eetpdaeerRrqqaEAAekRqeeqe 40 
                 +   +a erRr +aEAAe+R ++++
  KOO21450.1 428 AAAAEAVERRRLMAEAAERRAQQAS 452
                 45677899**************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (455 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       485  (0.0270511); expected 358.6 (0.02)
Passed bias filter:                      285  (0.015896); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.48u 0.23s 00:00:00.71 Elapsed: 00:00:00.39
# Mc/sec: 3501.16
//
Query:       KOO21451.1  [L=397]
Description: hypothetical protein Ctob_001527 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
     0.0025   17.8   0.0      0.065   13.2   0.0    2.8  3  Thioredoxin  Thioredoxin


Domain annotation for each model (and alignments):
>> Thioredoxin  Thioredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.1      0.14   2.5e+03       5      16 ..     173     184 ..     150     212 .. 0.61
   2 !   13.2   0.0   3.6e-06     0.065      27      93 ..     262     342 ..     247     353 .. 0.76
   3 ?    0.9   0.0     0.024   4.4e+02      71      93 ..     354     376 ..     349     387 .. 0.81

  Alignments for each domain:
  == domain 1  score: -1.5 bits;  conditional E-value: 0.14
                  SSHHHHHHHHTT CS
  Thioredoxin   5 ltkenFeeevak 16 
                  +++++F++eva+
   KOO21451.1 173 TVSTEFKREVAN 184
                  233344444444 PP

  == domain 2  score: 13.2 bits;  conditional E-value: 3.6e-06
                  -TTSHHHHCHHHHHHHHHHHCTT.......TSEEEEEETTTSHHHHHHTT-SS.......SSEEEEEETTEEEEEEESS-H CS
  Thioredoxin  27 ApwCghCkalaPeleklaeelkd.......kvklakvdvdenedlakkyeveg.......iPtlklfkngkevkkyegare 93 
                  Ap C +C++l   +++   e ++         ++akv ++++ dl+++++v+g       +P ++ fk g+e+  yeg+++
   KOO21451.1 262 APPCEPCQKLDALITDPTFERREaawrkrgLARIAKVYCNKQIDLCERFGVTGssgtepgLPHVVWFKGGEEQGMYEGGHS 342
                  889******97655544433333344447789*******************85333333389**********999999854 PP

  == domain 3  score: 0.9 bits;  conditional E-value: 0.024
                  SSSSEEEEEETTEEEEEEESS-H CS
  Thioredoxin  71 egiPtlklfkngkevkkyegare 93 
                  +++P ++ f++gke+  y+g+ +
   KOO21451.1 354 HSMPHVLWFEHGKEAVAYDGNTS 376
                  589****************9854 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (397 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       786  (0.0438396); expected 358.6 (0.02)
Passed bias filter:                      535  (0.0298399); expected 358.6 (0.02)
Passed Vit filter:                        61  (0.00340231); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.53u 0.28s 00:00:00.81 Elapsed: 00:00:00.44
# Mc/sec: 2700.17
//
Query:       KOO21452.1  [L=285]
Description: hypothetical protein Ctob_001524, partial [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    3.3e-17   62.3   0.0      5e-08   32.9   0.0    2.6  2  cNMP_binding  Cyclic nucleotide-binding domain


Domain annotation for each model (and alignments):
>> cNMP_binding  Cyclic nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.7   0.0   2.3e-10   4.2e-06      37      85 ..     124     174 ..     105     177 .. 0.79
   2 !   32.9   0.0   2.8e-12     5e-08       3      53 ..     219     269 ..     217     281 .. 0.93

  Alignments for each domain:
  == domain 1  score: 26.7 bits;  conditional E-value: 2.3e-10
                   S.E.EEEEEE-TTEEESHHHHH.HTS--SSEEEESSTEEEEEEEHHHHHHH CS
  cNMP_binding  37 gke.vvlavlgpGdlfGelall.tgeprtatvvAltdsellalprddflel 85 
                   g+  + +a lgpGd+fGe +ll +  +r ++v  +t++e+l++  + fl l
    KOO21452.1 124 GEPpKEIAQLGPGDFFGETGLLeGRVTRNTDVLCRTPVEVLMIGNAMFLHL 174
                   43346799**************64456*****************9999876 PP

  == domain 2  score: 32.9 bits;  conditional E-value: 2.8e-12
                   EE-TT-EEE-TTSB-SEEEEEEES-EEEEEEETTS.EEEEEEE-TTEEESH CS
  cNMP_binding   3 sfkagevifrqGdpadslyivlsGevrvyrlsedgkevvlavlgpGdlfGe 53 
                   +f +g+v+frqGd+a+++yi++ G+++ + +++ g++  l++l++G  fG 
    KOO21452.1 219 KFCKGDVLFRQGDQATHFYILKAGQLASSFVASTGEQADLGILSAGMRFGW 269
                   799******************************************988885 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (285 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       456  (0.0254337); expected 358.6 (0.02)
Passed bias filter:                      327  (0.0182386); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.27s 00:00:00.71 Elapsed: 00:00:00.44
# Mc/sec: 1963.12
//
Query:       KOO21453.1  [L=466]
Description: protein n-methyltransferase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
     0.0051   17.2   0.0      0.017   15.5   0.0    1.9  1  SET       SET domain


Domain annotation for each model (and alignments):
>> SET  SET domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.0   9.8e-07     0.017       1     132 [.      48     263 ..      48     302 .. 0.56

  Alignments for each domain:
  == domain 1  score: 15.5 bits;  conditional E-value: 9.8e-07
                 SCEEEESSXBXTTXEEEEEE.....ECCEECHHHHHHHHHH..........................HTEEEEEXGGXXGGSX....HHHHHHHTTSSH CS
                 xxxxxxxxxxxxxxxxxxxx.....xxxxxxxxxxxxxxxx..........................xxxxxxxxxxxxxxxx....xxxxxxxxxxxx RF
         SET   1 GrGvfAtedIpkgeficeyp.....eeiiltkdeadksele..........................aylfslpeapknlaft....kelakasastll 64 
                 GrGv+At +I + + i+++p     +   ltk +a   e                            + l +lp++++    t    +++a+a +  ++
  KOO21453.1  48 GRGVRATTEIVPSARIVKVPsrlalQVNSLTKSPAWCDEACwkaakwdarlammllreeqdarsdlkPWLAQLPRSFN----TpvlwSDAAAAFGVVSY 142
                 9****************9997777755567777766666667777777766556555555544444422222332222....23444666666666666 PP

                 HHHHHHHHHHHHHHHHHTHH...HHHHHXTTTSX....................................XXHCCCCCHCCCHEEEETEEEEEECCC.. CS
                 xxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxx....................................xxxxxxxxxxxxxxxxxxxxxxxxxxx.. RF
         SET  65 qklakdqkqaekedtdaalk...asskaesdlna....................................skpeagafsaiagysidaralksgnga.. 122
                  +l ++ + +  e+++a+ k   a sk+++d+++                                                              +  
  KOO21453.1 143 PALSAAVAAQRAEWDAARAKapgAPSKEKWDWAMnvarsrafsgpytpstfvgslstlfgastlalvyalV-------------------------Vgg 216
                 55555555555554444444000555666666544445455534444443433332222222222222220.........................022 PP

                 .....................................GTTGGGCEEX CS
                 .....................................xxxxxxxxxx RF
         SET 123 .....................................gplarflNHs 132
                                                      +p +++lNH+
  KOO21453.1 217 agaadqafdgflaavvfilcndfligprfssakrhvlCPWIDLLNHD 263
                 22333333333445555556666666666666666779999*****7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (466 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       408  (0.0227564); expected 358.6 (0.02)
Passed bias filter:                      260  (0.0145016); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.25s 00:00:00.74 Elapsed: 00:00:00.40
# Mc/sec: 3477.66
//
Query:       KOO21454.1  [L=233]
Description: 3 -5 exoribonuclease 1 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.5e-24   87.4   0.0    1.8e-24   87.1   0.0    1.1  1  RNase_T   Exonuclease


Domain annotation for each model (and alignments):
>> RNase_T  Exonuclease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   87.1   0.0     1e-28   1.8e-24       2     165 .]      30     207 ..      29     207 .. 0.93

  Alignments for each domain:
  == domain 1  score: 87.1 bits;  conditional E-value: 1e-28
                 EEEEEESSSTT..CTTS-EEEEEEEEEETTCC...EEEEEEEEEEEHSSHCSSSHHHHHHHHHCHHHHHTCEBHHHHHHHHHHH.HHHHTCCCETT.TC CS
     RNase_T   2 viDlEttglda..kekdeiieiaaisidggen...eigetfhfyvkptelakltdecteftgitqemldeapsfkevleefkel.lrklallvahn.aa 93 
                 v+D+E+t+ +   + ++eiie++ + +d   +   + + +f ++v+pt + +lt++ct++tgitq ++d ap+ +evl +f+ + + k+ ++   n ++
  KOO21454.1  30 VLDVEATCDEFtnSYQHEIIEFPVVLVDLLAEggpAAIAEFRSFVRPTVNTTLTEFCTRLTGITQGQVDSAPTLPEVLAAFEVWrIAKGLEYTDENkNF 128
                 89******9988878*************999999*88888********************************************54555566677789* PP

                 EEEESSHHHHHHHHHHHHH....HHHHCSEHCECHHHHHHHHHC...HHHHHHHHHTTCHSSSSTSSHHHHHHHHHHHH CS
     RNase_T  94 fdvgflraadkrilkkevp....krnqfldtlildkatlkelar...tsldklaeklgleedgraHrAldDaeataklf 165
                 +++ ++  +++ +l  e++     + ++   + ++k+ ++e+++    ++ k++e+  l++ gr H+++dD++++a+++
  KOO21454.1 129 AFAADGPFDLRFFLAGECSrkgiPMAAYYAKWVNIKSMFAEFYNtrnLKIHKMLERQNLKFEGRLHSGIDDTRNIARIL 207
                 ********************99999999999999**********9988999*************************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (233 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       353  (0.0196888); expected 358.6 (0.02)
Passed bias filter:                      333  (0.0185733); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.24s 00:00:00.64 Elapsed: 00:00:00.40
# Mc/sec: 1748.61
//
Query:       KOO21455.1  [L=183]
Description: intraflagellar transport protein 27-like protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.3e-36  125.7   0.0    1.6e-36  125.4   0.0    1.0  1  Ras              Ras family
    1.1e-19   70.9   0.0    1.5e-19   70.4   0.0    1.2  1  Roc              Ras of Complex, Roc, domain of DAPkinase
    5.2e-12   45.6   0.0      6e-12   45.4   0.0    1.1  1  Arf              ADP-ribosylation factor family
     0.0048   16.7   0.0     0.0075   16.1   0.0    1.3  1  MoeA_N           MoeA N-terminal region (domain I and II)
  ------ inclusion threshold ------
      0.022   14.2   0.0      0.034   13.6   0.0    1.3  1  TniB             Bacterial TniB protein
       0.15   12.4   0.0       0.17   12.2   0.0    1.3  1  AAA_16           AAA ATPase domain
       0.16   11.6   0.0       0.21   11.2   0.0    1.2  1  CAP59_mtransfer  Cryptococcal mannosyltransferase 1
       0.17   11.6   0.0       0.32   10.7   0.0    1.4  1  PduV-EutP        Ethanolamine utilisation - propanediol utili


Domain annotation for each model (and alignments):
>> Ras  Ras family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  125.4   0.0     7e-40   1.6e-36       1     159 [.      12     175 ..      12     177 .. 0.95

  Alignments for each domain:
  == domain 1  score: 125.4 bits;  conditional E-value: 7e-40
                 EEEEEESTTSSHHHHHHHHHHS..SCSSSCTTTSSEEEEEEEEEET..TEEEEEEEEEETTSGGGHHHHHHHHTTESEEEEEEETTBHHHHHTHHHHHH CS
         Ras   1 KlvlvGdsavGKtslllrfvkd..kFkeeyesTigvdfytkeievd..gkevkleiwDTAGqeefkslrelyyrdaegillvyditsresfenvkkwve 95 
                 Kl ++Gd avGKt+l+  f ++  +F++ y++T gvdf +k ++v      v+++ +D  Gq+ f+++  +y ++++++llvyd+t+ ++fe + +w++
  KOO21455.1  12 KLAIIGDPAVGKTALTQMFHSNgqRFPKAYNMTCGVDFCVKAVTVPgtTDAVEFHCFDVGGQDIFSEMFGSYCEGTKAVLLVYDVTRGHTFEACGNWYS 110
                 899****************986448********************9556689*********************************************** PP

                 HHHHHST.TTSEEEEEEETTTGGGG-SS-HHHHHHHHHHHTSEEEEEBTTTTCTHHHHHHHHHHH CS
         Ras  96 eikrvae.envpivLvGnKvDleekravsteegeelakelglkfletSAktnenveeafeellre 159
                  + + +  e +p ++v+nKvDl+e+ +++++ g+++a +++++++etSA + +  +e f el+++
  KOO21455.1 111 RLLEATGaEGLPGAVVANKVDLRERIVINRQVGQRMAASMNMPYFETSALDGHACDEPFVELAKA 175
                 ***9999899***************************************************9986 PP

>> Roc  Ras of Complex, Roc, domain of DAPkinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.4   0.0   6.6e-23   1.5e-19       1     120 []      12     132 ..      12     132 .. 0.87

  Alignments for each domain:
  == domain 1  score: 70.4 bits;  conditional E-value: 6.6e-23
                 EEEEESSTTSSHHHHHHCHCT..-CCC-EEETTTTEEEEEEECGGSGGCTTBTTTTCEEEEEEEE-SGGCTTTT-HHHHCTSCEEEEEEE...GHHHHC CS
         Roc   1 KvvlvGdsgvGKtsllkrfve..dkfsekekstigvdfltkevtkikgvendkkvkkvklniWDtaGqerfrslhplylreaalailvyd...srssen 94 
                 K+ ++Gd +vGKt l + f +  ++f + ++ t+gvdf+ k v ++ g+     ++ v+++++D++Gq+ f+++  +y+++ ++++lvyd    +++e 
  KOO21455.1  12 KLAIIGDPAVGKTALTQMFHSngQRFPKAYNMTCGVDFCVKAV-TVPGT-----TDAVEFHCFDVGGQDIFSEMFGSYCEGTKAVLLVYDvtrGHTFEA 104
                 899****************98556899************9987.67663.....34699*******************************643347889 PP

                 HHHHHHHHHHHCSSS..-EEEEEE-TTT CS
         Roc  95 lkeWlkelkkvagks..pvilvgnkiDl 120
                   +W++ l + +g +  p  +v+nk+Dl
  KOO21455.1 105 CGNWYSRLLEATGAEglPGAVVANKVDL 132
                 99*****9888776535889******95 PP

>> Arf  ADP-ribosylation factor family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.4   0.0   2.7e-15     6e-12      16     169 ..      12     170 ..       3     176 .. 0.81

  Alignments for each domain:
  == domain 1  score: 45.4 bits;  conditional E-value: 2.7e-15
                 EEEEEESTTSSHHHHHHHHHHSSCEE.....CSSSSSEEEEEEEE....TTEEEEEEEE-SSGGGGGGGGGGCTTESEEEEEEETT-CTTHHHHHHHHH CS
         Arf  16 rilllGLDnaGKtTilkklkleelvt.....tvPTigfnveelei....knlkftvwDvGGqeklRplWknYfektdavifvvDsadreRleeakeeLk 105
                 ++ ++G  + GKt + ++++++ +       ++  + f v+ +++      ++f+++DvGGq+   +++ +Y e t+av+ v D++  + +e + +  +
  KOO21455.1  12 KLAIIGDPAVGKTALTQMFHSNGQRFpkaynMTCGVDFCVKAVTVpgttDAVEFHCFDVGGQDIFSEMFGSYCEGTKAVLLVYDVTRGHTFEACGNWYS 110
                 6778888899********99875432223338888999*****997777899*********************************************** PP

                 HHCTSGCCTTSEEEEEEE-TTSTTSS-HHHHHHHTTGGGSSSSSSEEEEEEBTTTTBTHHHHHH CS
         Arf 106 alleeeelkevallvlaNKqDlpealseeelrellgleelkgkrkleiqkcsavkgeglkegle 169
                 +lle    +  +  v+aNK Dl+e +  +   +++g  ++ ++ ++  +++sa+ g+  +e + 
  KOO21455.1 111 RLLEATGAEGLPGAVVANKVDLRERIVIN---RQVGQ-RMAASMNMPYFETSALDGHACDEPFV 170
                 **********************9987543...33332.33335567777777777777666665 PP

>> MoeA_N  MoeA N-terminal region (domain I and II)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.0   3.3e-06    0.0075      21      58 ..     130     168 ..     109     182 .. 0.78

  Alignments for each domain:
  == domain 1  score: 16.1 bits;  conditional E-value: 3.3e-06
                 EEG.GCG-TT-BBSS-EE-SS-BSSS-EESSSEEEEEEB CS
      MoeA_N  21 vpl.aaealgrvlaedvvApedvPpfdnSamDGYAvrae 58 
                 v+l ++  ++r + + + A++++P f +Sa DG A + +
  KOO21455.1 130 VDLrERIVINRQVGQRMAASMNMPYFETSALDGHACDEP 168
                 55554446789999*********************9654 PP

>> TniB  Bacterial TniB protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.0   1.5e-05     0.034      35      81 ..      10      60 ..       1      67 [. 0.68

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 1.5e-05
        TniB 35 mpnlllvGdsnnGKtmivekFarlhppekdedae....kvpvlvvqappkp 81
                 p+l ++Gd+++GKt++ + F+++ ++ +++ +      + v +v +p + 
  KOO21455.1 10 RPKLAIIGDPAVGKTALTQMFHSNGQRFPKAYNMtcgvDFCVKAVTVPGTT 60
                399*******************98877666554411114455555555555 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   7.7e-05      0.17      27      51 ..      13      36 ..       8     170 .. 0.78

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 7.7e-05
      AAA_16 27 vllsGesGvGKsslvrellralekd 51
                + ++G+++vGK++l ++++    ++
  KOO21455.1 13 LAIIGDPAVGKTALTQMFHS-NGQR 36
                6799************9994.4443 PP

>> CAP59_mtransfer  Cryptococcal mannosyltransferase 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   9.4e-05      0.21     129     154 ..      24     101 ..       8     169 .. 0.59

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 9.4e-05
  CAP59_mtransfer 129 edileLleqqnge.....ydaaCalDfskk................................................p 154
                      + ++++ ++++ +     y+++C++Df +k                                                 
       KOO21455.1  24 TALTQMFHSNG-QrfpkaYNMTCGVDFCVKavtvpgttdavefhcfdvggqdifsemfgsycegtkavllvydvtrghT 101
                      55566666655.336666**********886666655555555555555555555555555555555555555555441 PP

>> PduV-EutP  Ethanolamine utilisation - propanediol utilisation
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   0.00014      0.32       3      45 ..      12      58 ..      10      70 .. 0.81

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00014
   PduV-EutP  3 killiGkvgsGKttLtqalkg..eel..kYkktqaiefsdeviDtPG 45
                k+ +iG   +GKt+Ltq ++   +++   Y+ t  ++f  +++  PG
  KOO21455.1 12 KLAIIGDPAVGKTALTQMFHSngQRFpkAYNMTCGVDFCVKAVTVPG 58
                6779*************998633333327999999999999999998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (183 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       312  (0.017402); expected 358.6 (0.02)
Passed bias filter:                      300  (0.0167327); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.41u 0.26s 00:00:00.67 Elapsed: 00:00:00.41
# Mc/sec: 1343.14
//
Query:       KOO21456.1  [L=1181]
Description: hypothetical protein Ctob_001528 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.2e-07   30.1   6.1    1.2e-06   28.6   6.1    1.7  1  Ax_dynein_light  Axonemal dynein light chain
     0.0002   21.0   0.3     0.0071   16.2   0.1    3.2  3  EF-hand_6        EF-hand domain
     0.0003   20.1   0.3     0.0011   18.4   0.3    2.0  1  EF-hand_1        EF hand
     0.0027   17.5   0.1     0.0078   16.0   0.1    1.8  1  EF-hand_8        EF-hand domain pair
  ------ inclusion threshold ------
      0.012   16.0   0.1      0.039   14.4   0.1    1.9  1  EF-hand_7        EF-hand domain pair
      0.059   12.9   0.9       0.14   11.7   0.9    1.6  1  EF-hand_5        EF hand
        1.3    8.7  10.7      0.034   13.9   3.4    2.1  2  HD_4             HD domain


Domain annotation for each model (and alignments):
>> Ax_dynein_light  Axonemal dynein light chain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.6   6.1   4.8e-10   1.2e-06      25     156 ..     190     317 ..     180     339 .. 0.81

  Alignments for each domain:
  == domain 1  score: 28.6 bits;  conditional E-value: 4.8e-10
  Ax_dynein_light  25 ssepatredviklqekldeklqqrqaretGiCpiReelysqcfdEliRQvtincaerGllLlrvrdelrmtiaayktlyessvaFgmrkalqae 118
                       s+p++re vi+l+ +l+++l + +    G    +      +f E+ RQv ++caerG lL  +r ++   ia +   + +      r al+++
       KOO21456.1 190 ESNPSSREQVIRLEAQLKQQLAAASH-SLGD---QMVAWDAAFAEVARQVRVTCAERGELLDTIRSRYDDWIARLLLAVAE---MHSRSALKTQ 276
                      689******************96555.3332...23346789******************************987655554...4588888666 PP

  Ax_dynein_light 119 ...qgkselekkikeLeeekeelekqvaelkaklealekre 156
                         ++k+  e++++eL   ++++ ++++ l+++le  +k +
       KOO21456.1 277 sdvEEKATQEERLQELLLANRSMAQKMQVLRRELEWNRKAA 317
                      557889999999******************99999777765 PP

>> EF-hand_6  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.2   0.0      0.38   9.7e+02      16      28 ..     471     483 ..     469     491 .. 0.82
   2 !   16.2   0.1   2.8e-06    0.0071       2      27 ..     869     894 ..     868     898 .. 0.94
   3 ?   -1.5   0.0       1.3   3.4e+03       4      10 ..     904     910 ..     902     911 .. 0.89

  Alignments for each domain:
  == domain 1  score: 0.2 bits;  conditional E-value: 0.38
   EF-hand_6  16 kidaeElrkalrk 28 
                 +++ +El ++lrk
  KOO21456.1 471 HLTGAELGAVLRK 483
                 699*********7 PP

  == domain 2  score: 16.2 bits;  conditional E-value: 2.8e-06
   EF-hand_6   2 lreaFklfDkdgdGkidaeElrkalr 27 
                 l+++F + D +gdG +  +E++++++
  KOO21456.1 869 LQSIFLEADDNGDGILQLDEFIQMIK 894
                 899*********************98 PP

  == domain 3  score: -1.5 bits;  conditional E-value: 1.3
   EF-hand_6   4 eaFklfD 10 
                 eaFkl+D
  KOO21456.1 904 EAFKLYD 910
                 79****9 PP

>> EF-hand_1  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.4   0.3   4.3e-07    0.0011       2      27 ..     869     894 ..     868     895 .. 0.94

  Alignments for each domain:
  == domain 1  score: 18.4 bits;  conditional E-value: 4.3e-07
                 HHHHHHHHTTTSSSEEEHHHHHHHHH CS
   EF-hand_1   2 lkeiFrefDkDgdGkIdfeEfkellk 27 
                 l+ iF e+D +gdG + ++Ef++++k
  KOO21456.1 869 LQSIFLEADDNGDGILQLDEFIQMIK 894
                 789*********************87 PP

>> EF-hand_8  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.1   3.1e-06    0.0078      27      52 ..     868     893 ..     851     896 .. 0.89

  Alignments for each domain:
  == domain 1  score: 16.0 bits;  conditional E-value: 3.1e-06
   EF-hand_8  27 evdilfrefDtdgdGkisfeEFcvll 52 
                 +++++f e+D +gdG++ ++EF+++ 
  KOO21456.1 868 QLQSIFLEADDNGDGILQLDEFIQMI 893
                 699********************985 PP

>> EF-hand_7  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.4   0.1   1.5e-05     0.039      44      70 ..     867     893 ..     854     894 .. 0.91

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 1.5e-05
   EF-hand_7  44 eelellfkefDtdkdGvisfdEFlkly 70 
                 ++l+ +f e D ++dG + +dEF +++
  KOO21456.1 867 KQLQSIFLEADDNGDGILQLDEFIQMI 893
                 689*********************997 PP

>> EF-hand_5  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.9   5.6e-05      0.14       1      24 [.     869     892 ..     869     893 .. 0.88

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 5.6e-05
                 HHHHHHHH-SS-SSCE-HHHHHHH CS
   EF-hand_5   1 lkdtFqaiDlNgDGkIskeELktl 24 
                 l+  F ++D NgDG +  +E+ ++
  KOO21456.1 869 LQSIFLEADDNGDGILQLDEFIQM 892
                 5678999**************876 PP

>> HD_4  HD domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   3.4   1.3e-05     0.034      50     106 ..     240     296 ..     188     317 .. 0.76
   2 ?   -4.0   0.8       4.3   1.1e+04      17      44 ..    1110    1135 ..    1096    1142 .. 0.57

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 1.3e-05
        HD_4  50 vedalsleeirerfGeevarLvegvsklkrlqkvaaadeaeekaeqvenlRkmLlAm 106
                  e  + l+ ir r ++ +arL  +v++++  + ++ +++ eeka+q e+l+++LlA 
  KOO21456.1 240 AERGELLDTIRSRYDDWIARLLLAVAEMHSRSALKTQSDVEEKATQEERLQELLLAN 296
                 222355699*************************999******************95 PP

  == domain 2  score: -4.0 bits;  conditional E-value: 4.3
        HD_4   17 gepllahalevAailaelgldaetviAa 44  
                   +p+ +  +e+Aa+la++   a +++Aa
  KOO21456.1 1110 AQPASRVSIEAAALLASI--AAPSLAAA 1135
                  344444555566666665..44555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1181 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       720  (0.0401584); expected 358.6 (0.02)
Passed bias filter:                      422  (0.0235373); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.78u 0.27s 00:00:01.05 Elapsed: 00:00:00.44
# Mc/sec: 8130.39
//
Query:       KOO21457.1  [L=91]
Description: trafficking protein particle complex subunit 4-like protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    8.7e-27   93.8   0.1    9.3e-27   93.7   0.1    1.0  1  Sybindin  Sybindin-like family
    8.3e-10   38.9   0.0    9.7e-10   38.7   0.0    1.0  1  Sedlin_N  Sedlin, N-terminal conserved region


Domain annotation for each model (and alignments):
>> Sybindin  Sybindin-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   93.7   0.1     1e-30   9.3e-27      50     140 ..       2      85 ..       1      88 [. 0.95

  Alignments for each domain:
  == domain 1  score: 93.7 bits;  conditional E-value: 1e-30
    Sybindin  50 sklspvkakeelqgssgievletdtfkLhclqtltGiKfvlitdtktnaeadsllrkiyelYsdyvlknPfyslempircelFdeklkell 140
                 ++lsp      ++gs  +  le d f L+ ++t tG+Kf+l +d+++  ++d +l+ +y lYsdyvlknPfy+l+mpi+c +Fdek+++l 
  KOO21457.1   2 KQLSP------VPGSGKMVELECDSFVLQSFDTATGLKFFLTADPDS-RHIDAVLKEVYVLYSDYVLKNPFYELDMPIQCSKFDEKVQKLA 85 
                 58888......99999999****************************.***************************************9975 PP

>> Sedlin_N  Sedlin, N-terminal conserved region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.7   0.0   1.1e-13   9.7e-10      59     129 ..      19      85 ..      10      87 .. 0.88

  Alignments for each domain:
  == domain 1  score: 38.7 bits;  conditional E-value: 1.1e-13
    Sedlin_N  59 eklsvsayvtnskikflllhesssskkkdekikqffqevhelyvktlm.nPFykvneeirSpaFdkkvkkla 129
                 ++++ +++ t++++kf l  +      ++ +i   ++ev+ ly ++++ nPFy+ +++i+ ++Fd+kv+kla
  KOO21457.1  19 DSFVLQSFDTATGLKFFLTAD-----PDSRHIDAVLKEVYVLYSDYVLkNPFYELDMPIQCSKFDEKVQKLA 85 
                 6778899***********999.....8999999***********98654*********************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (91 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       311  (0.0173462); expected 358.6 (0.02)
Passed bias filter:                      271  (0.0151152); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.37u 0.25s 00:00:00.62 Elapsed: 00:00:00.42
# Mc/sec: 651.82
//
Query:       KOO21458.1  [L=359]
Description: cleavage and polyadenylation specificity factor cpsf30-like protein, partial [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.9e-47  161.3   0.0    3.1e-47  160.6   0.0    1.4  1  YTH            YT521-B-like domain


Domain annotation for each model (and alignments):
>> YTH  YT521-B-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  160.6   0.0   1.7e-51   3.1e-47       1     164 [.     143     284 ..     143     286 .. 0.90

  Alignments for each domain:
  == domain 1  score: 160.6 bits;  conditional E-value: 1.7e-51
                 EEEEEEEESHHHHHHHHHHHCEEEEEHHHHHHHHHHHHCS.EEEEEEEETTTSEEEEEEEEE......SEEBTTS-................GGCC--T CS
         YTH   1 kryFilKslseedlekSvetgvWatqkhnekkLdqafrtsekVyLiFsvnksgeFfGyArmasssssssavelassaseesasesidasaeessfweae 99 
                 +r+F++Ks+ ++dl+ S+++ vWatq++ne+kL++af+++e V+L+Fsvn+s+ F+GyArma      s+   a +             ++ s  w  +
  KOO21458.1 143 TRFFVIKSFCARDLKISMQKAVWATQPRNEQKLNAAFNEAEAVILFFSVNESRAFQGYARMA------SRTGEAGT------------DEDVSALWTGA 223
                 59************************************************************......33333333............12245899988 PP

                 TEE...........EEEEEEEEEEEEEEGHHCCCHCHCCCTT.BGCG--TTEEE-HHHHHHHHHH CS
         YTH 100 skkeeaseeskswgkpFkveWistkrlpfsrtrhlrnpwnenreVkvsrdgtelepsvGrqLlel 164
                 + +     +  +wg++Fkv+W ++ +l+f+ + hlrnp+ne++++k+srdg+e+epsvGrqL+  
  KOO21458.1 224 EGD----VKAPAWGSTFKVKWQTIYDLSFNDVMHLRNPYNEDKPIKISRDGQEVEPSVGRQLCLA 284
                 887....6899***************************************************965 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (359 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       377  (0.0210274); expected 358.6 (0.02)
Passed bias filter:                      252  (0.0140554); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.21s 00:00:00.69 Elapsed: 00:00:00.41
# Mc/sec: 2649.15
//
Query:       KOO21459.1  [L=536]
Description: hypothetical protein Ctob_001533 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    9.5e-16   57.6  21.2    9.5e-16   57.6  21.2    2.3  2  MFS_1          Major Facilitator Superfamily
  ------ inclusion threshold ------
       0.02   15.2   1.0      0.096   13.0   1.0    2.2  1  DUF5379        Family of unknown function (DUF5379)
        1.2    9.6   8.4       0.76   10.3   1.8    2.3  2  Abhydrolase_6  Alpha/beta hydrolase family


Domain annotation for each model (and alignments):
>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.6  21.2   1.6e-19   9.5e-16      10     329 ..      36     455 ..      23     463 .. 0.74
   2 ?   -1.0   8.8      0.11   6.3e+02     214     297 ..     430     508 ..     424     521 .. 0.65

  Alignments for each domain:
  == domain 1  score: 57.6 bits;  conditional E-value: 1.6e-19
       MFS_1  10 larsi.......lgpalplalaedlgispseigllltlyalgaavaslplGrlsdrf......Grrrvlllglllfalglllllf.a.......sslwl 87 
                 +++s+        +++lp  l+++l       g+ l +  +++a +++++ +l          G r + ++g l+ ++   ++++ a        ++wl
  KOO21459.1  36 ASFSVfalnpdlSILLLP-SLTRNLE------GWTLNCNNIAQAGFIFIAIYLLRERpspaptGLRTIAVIGSLTQFVQ-SFCWYvAtlvpsaeVQVWL 126
                 444443322221333333.4444444......99999999999999999988876333455558999888888888888.4444222344555777*** PP

       MFS_1  88 llvlrvlqGlgagalfpagaaliadwfpkeergraigllsagfslGailgpllggllasslgWravfyilaivsllafvlfllllpeepperkrkspke 186
                 +l++    G+++g++  a+  + a wfp++er+ a+g +++++ +G +l  +++ ++++ +   ++  +  ++s+l ++++l+++p++p++ + + ++ 
  KOO21459.1 127 VLFGSSAGGVCTGCVQGACSRISAVWFPPDERSGATGNVYSAYFAGQLLFTAISLFFCADFDVLYTLHVQLGLSVLNCIIILAWFPDRPVSDESPLKIY 225
                 *******************************************************************************999***99999999998777 PP

       MFS_1 187 ee...........................................................kgtgpaplvpawkallkdpvlwillialllfffgfsgl 226
                 +                                                             + +++++++ ++ +  + vl  l+i++   + +++++
  KOO21459.1 226 RDtlisratrdatrgastrgthtrdgtrstggglldrlldrstqpaapgdasegaragarsRSIAKSSWLSSLRNVGLSSVL--LIISVSWSTGVYQAY 322
                 7799999999999999999*******************99999999999997777755555444444444444444444455..33333333347888* PP

       MFS_1 227 ltllplylqevlgls..................glllaglllallalvgailallagrlsdrlgrrrrlllallllllaalglallavt.......... 297
                  + lpl +    g +                   + la+   a +a++g +++++a r+  r  r +rl+l + l+l++ +gl++++++          
  KOO21459.1 323 GQVLPLAFANEGGATylpcnysayarlsnaqgdRFALAS--TATYAIGGSFGGMVADRFFER--RLKRLVLLCYLALTINFGLIIMSMPpppffvtntg 417
                 ******544444444556666677777788875344444..666777776668888888866..5779*********************7777776655 PP

       MFS_1 298 ......ssavllllvlvliGfglgfvfpsllalasdla 329
                          +l+++++++ G++++++++++l l+++ a
  KOO21459.1 418 gvsfgpGGEPLAIVLVATSGLFSSMATVPALELLAEAA 455
                 55555555555555666677777777777777777665 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 0.11
       MFS_1 214 ialllfffgfsglltllplylqevlglsglllaglllallalvgailallagrlsdrlgrrrrlllallllllaalglallavt 297
                 i +l+++ g+++ ++++p +       +  l+ g+   l++l+++i+++++++ls+ +    + l +l++++++++++++ + t
  KOO21459.1 430 I-VLVATSGLFSSMATVPAL-ELLAEAA-TLSEGASNNLVMLGTQIFGIMLTYLSNVIAT--PGLGILICIFIICCSVIVSPIT 508
                 3.333334666667777773.3333333.4555555788888888888999999988665..7777777777777777777766 PP

>> DUF5379  Family of unknown function (DUF5379)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   1.0   1.6e-05     0.096      11      54 ..     470     509 ..     462     518 .. 0.81

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 1.6e-05
     DUF5379  11 haiggiifgylanyvytlglgllsglatllflfiglvilghlsa 54 
                   i+gi++ yl+n + t glg+l      +f++  +vi+  ++ 
  KOO21459.1 470 TQIFGIMLTYLSNVIATPGLGILI----CIFIICCSVIVSPITE 509
                 679*****************9986....4688888888777665 PP

>> Abhydrolase_6  Alpha/beta hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.6   0.8     0.029   1.7e+02      40      95 ..      86     155 ..      49     287 .. 0.55
   2 ?   10.3   1.8   0.00013      0.76      36      98 ..     332     416 ..     279     474 .. 0.61

  Alignments for each domain:
  == domain 1  score: 2.6 bits;  conditional E-value: 0.029
                    -GGCS--HHHCHHHHHHHCCTT.............TTSE..EEEEETCHHHHHHHHHHCC...EEEEES- CS
  Abhydrolase_6  40 sdpppldledladlaalldelaa...........gggpv..vlvGHSlGGalalaaapla.lvvgvlldp 95 
                    ++p+p++l+ +a +  l + + +              +v  vl+G S GG+    ++ ++ ++++v   p
     KOO21459.1  86 PSPAPTGLRTIAVIGSLTQFVQSfcwyvatlvpsAEVQVwlVLFGSSAGGVCTGCVQGACsRISAVWFPP 155
                    55666666553333222222222223333344232334488**********8888777775333355555 PP

  == domain 2  score: 10.3 bits;  conditional E-value: 0.00013
                    TSTS-GGCS--HHHCHHHHHHHCCTT...TTSEEEEEETCHHHHHHHHHHCC..EEEEES-.......................- CS
  Abhydrolase_6  36 GhGrsdpppldledladlaalldelaa.gggpvvlvGHSlGGalalaaaplalvvgvlldp...............pp......t 98 
                    + G+++  p +++++a+l+++  +  a    + +++G S+GG++a +++   l + vll+                pp      t
     KOO21459.1 332 NEGGATYLPCNYSAYARLSNAQGDRFAlASTATYAIGGSFGGMVADRFFERRLKRLVLLCYlaltinfgliimsmpPPpffvtnT 416
                    334566777777777777555545444466667**************55555333366666333444444444432222333320 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (536 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       656  (0.0365888); expected 358.6 (0.02)
Passed bias filter:                      358  (0.0199677); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.59u 0.28s 00:00:00.87 Elapsed: 00:00:00.45
# Mc/sec: 3580.27
//
Query:       KOO21460.1  [L=267]
Description: hypothetical protein Ctob_001532 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (267 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       301  (0.0167884); expected 358.6 (0.02)
Passed bias filter:                      261  (0.0145574); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.42u 0.24s 00:00:00.65 Elapsed: 00:00:00.41
# Mc/sec: 1938.71
//
Query:       KOO21461.1  [L=174]
Description: hypothetical protein Ctob_001529 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (174 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       354  (0.0197445); expected 358.6 (0.02)
Passed bias filter:                      291  (0.0162307); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.40u 0.26s 00:00:00.66 Elapsed: 00:00:00.42
# Mc/sec: 1243.08
//
Query:       KOO21462.1  [L=146]
Description: hypothetical protein Ctob_001544, partial [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (146 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       439  (0.0244855); expected 358.6 (0.02)
Passed bias filter:                      277  (0.0154498); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.39u 0.26s 00:00:00.65 Elapsed: 00:00:00.41
# Mc/sec: 1064.16
//
Query:       KOO21463.1  [L=65]
Description: hypothetical protein Ctob_001540 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.7e-07   31.3   0.0      2e-07   31.0   0.0    1.0  1  LRR_5     BspA type Leucine rich repeat region (6 copies)


Domain annotation for each model (and alignments):
>> LRR_5  BspA type Leucine rich repeat region (6 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.0   0.0   1.1e-11     2e-07      14      49 ..       2      37 ..       1      40 [. 0.78

  Alignments for each domain:
  == domain 1  score: 31.0 bits;  conditional E-value: 1.1e-11
       LRR_5 14 tsitipssvtsIgeyaFsnctslksitlpsslteig 49
                tsi++p+ +ts+g+ aF++ct ++si lp++lt+ig
  KOO21463.1  2 TSIKLPTGLTSLGSGAFADCTAMTSIVLPDTLTSIG 37
                788888888888888888888888888888888887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (65 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                        96  (0.00535445); expected 358.6 (0.02)
Passed bias filter:                       70  (0.00390429); expected 358.6 (0.02)
Passed Vit filter:                         6  (0.000334653); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.32u 0.23s 00:00:00.55 Elapsed: 00:00:00.38
# Mc/sec: 516.06
//
Query:       KOO21464.1  [L=107]
Description: zinc c3hc4 type (ring finger) domain containing protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    9.4e-14   51.5   9.4    1.2e-13   51.1   9.4    1.2  1  zf-RING_2     Ring finger domain
    3.4e-09   36.3   7.0    5.6e-09   35.6   7.0    1.4  1  zf-RING_11    RING-like zinc finger
    2.6e-08   33.6  10.8    3.6e-08   33.1  10.8    1.2  1  zf-C3HC4_2    Zinc finger, C3HC4 type (RING finger)
    4.8e-08   32.7   9.4    6.4e-08   32.3   9.4    1.2  1  zf-C3HC4      Zinc finger, C3HC4 type (RING finger)
      1e-07   32.1  10.2    1.9e-07   31.2  10.2    1.4  1  zf-rbx1       RING-H2 zinc finger domain
    3.1e-07   30.3   8.2      4e-07   29.9   8.2    1.2  1  zf-RING_5     zinc-RING finger domain
    1.6e-06   27.9   6.3    2.4e-06   27.3   6.3    1.2  1  zf-C3HC4_3    Zinc finger, C3HC4 type (RING finger)
    9.2e-06   25.6   6.9    1.4e-05   25.0   6.9    1.3  1  zf-RING_UBOX  RING-type zinc-finger
    0.00011   21.9   7.0    0.00017   21.4   7.0    1.3  1  Prok-RING_4   Prokaryotic RING finger family 4
  ------ inclusion threshold ------
      0.011   15.8   7.0      0.021   14.9   7.0    1.6  1  zf-ANAPC11    Anaphase-promoting complex subunit 11 RING-H2 f
      0.018   15.1   6.3      0.042   14.0   6.3    1.6  1  RINGv         RING-variant domain
      0.024   14.8   9.1       0.18   12.0   9.1    2.2  1  FANCL_C       FANCL C-terminal domain
      0.059   13.1   2.0       0.73    9.6   0.1    2.2  2  YdjO          Cold-inducible protein YdjO
       0.13   11.9   6.7        0.2   11.3   6.7    1.4  1  Zn_ribbon_17  Zinc-ribbon, C4HC2 type
       0.42   10.8   6.4       0.64   10.2   6.4    1.3  1  zf-RING_10    zinc RING finger of MSL2


Domain annotation for each model (and alignments):
>> zf-RING_2  Ring finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.1   9.4     1e-16   1.2e-13       2      44 .]      56      98 ..      55      98 .. 0.97

  Alignments for each domain:
  == domain 1  score: 51.1 bits;  conditional E-value: 1e-16
   zf-RING_2  2 eCpICleelssadsvlllpCgHvfhreClerwlrssstCPlCr 44
                +C+ICl+e++++d+++ lpC H fh++C+++wl+ ++tCP+C+
  KOO21464.1 56 SCVICLCEYDEGDEMHMLPCAHGFHKKCVSQWLKDKPTCPACQ 98
                7*****************************************5 PP

>> zf-RING_11  RING-like zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.6   7.0   4.7e-12   5.6e-09       2      29 .]      57      84 ..      56      84 .. 0.98

  Alignments for each domain:
  == domain 1  score: 35.6 bits;  conditional E-value: 4.7e-12
  zf-RING_11  2 CsICLeefkpgqalfilpCsHtFHfkCI 29
                C+ICL e+ +g+++ +lpC H FH kC+
  KOO21464.1 57 CVICLCEYDEGDEMHMLPCAHGFHKKCV 84
                ***************************7 PP

>> zf-C3HC4_2  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.1  10.8     3e-11   3.6e-08       2      40 .]      57      97 ..      56      97 .. 0.90

  Alignments for each domain:
  == domain 1  score: 33.1 bits;  conditional E-value: 3e-11
  zf-C3HC4_2  2 CpiCldmlkdpsvvt..pCgHvfCqkCilrsLeekneCPlC 40
                C iCl ++ ++  +   pC H+f++kC+ ++L++k  CP C
  KOO21464.1 57 CVICLCEYDEGDEMHmlPCAHGFHKKCVSQWLKDKPTCPAC 97
                ********988555455************************ PP

>> zf-C3HC4  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.3   9.4   5.4e-11   6.4e-08       1      41 []      57      97 ..      57      97 .. 0.96

  Alignments for each domain:
  == domain 1  score: 32.3 bits;  conditional E-value: 5.4e-11
                -TTT-S--SS-E...E-TTS--B-CHHHHHHHHCTSSB--TTT CS
    zf-C3HC4  1 CpiCleeakepn..elleCkHsfCskCirkilksrkkvkCPlC 41
                C iCl+e+ e +   +l+C H f++kC++++lk   k +CP C
  KOO21464.1 57 CVICLCEYDEGDemHMLPCAHGFHKKCVSQWLK--DKPTCPAC 97
                9********999889******************..8899**** PP

>> zf-rbx1  RING-H2 zinc finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.2  10.2   1.6e-10   1.9e-07      12      55 .]      55      98 ..      50      98 .. 0.80

  Alignments for each domain:
  == domain 1  score: 31.2 bits;  conditional E-value: 1.6e-10
     zf-rbx1 12 eacieckapgdeecpvvlGeCgHaFHlhCiskWlktrkvCPlcr 55
                + c+ c  + de   + +  C H FH++C+s+Wlk + +CP c+
  KOO21464.1 55 ASCVICLCEYDEGDEMHMLPCAHGFHKKCVSQWLKDKPTCPACQ 98
                56666666666654555669***********************6 PP

>> zf-RING_5  zinc-RING finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.9   8.2   3.4e-10     4e-07       2      43 ..      57      98 ..      56      99 .. 0.95

  Alignments for each domain:
  == domain 1  score: 29.9 bits;  conditional E-value: 3.4e-10
   zf-RING_5  2 CnkCfeklskeekfyltsCgHifCekClkkllekeavCpiCr 43
                C +C +++ + +++++++C H f++kC+++ l+ + +Cp+C+
  KOO21464.1 57 CVICLCEYDEGDEMHMLPCAHGFHKKCVSQWLKDKPTCPACQ 98
                ********88899****************************8 PP

>> zf-C3HC4_3  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.3   6.3     2e-09   2.4e-06       3      48 ..      55     102 ..      53     103 .. 0.87

  Alignments for each domain:
  == domain 1  score: 27.3 bits;  conditional E-value: 2e-09
                 SB-TTTSSS...BS-EEETTEEEEEE-HHHHHHHHHTT-B-TTT--B-- CS
  zf-C3HC4_3   3 eeCviCler...prnvvllpCgHlvlCeeCaekllkrkkkCpiCrrpie 48 
                   CviCl +     ++ +lpC H  + ++C++++lk k++Cp C+r+++
  KOO21464.1  55 ASCVICLCEydeGDEMHMLPCAHG-FHKKCVSQWLKDKPTCPACQRDVR 102
                 57****9854337779********.*********************987 PP

>> zf-RING_UBOX  RING-type zinc-finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.0   6.9   1.1e-08   1.4e-05       1      39 []      57      95 ..      57      95 .. 0.88

  Alignments for each domain:
  == domain 1  score: 25.0 bits;  conditional E-value: 1.1e-08
  zf-RING_UBOX  1 CpIClelft..dP..lvlpCGHtFCreClwelskslegafkCP 39
                  C ICl +++  d   + lpC H F+++C+   s++l+++ +CP
    KOO21464.1 57 CVICLCEYDegDEmhM-LPCAHGFHKKCV---SQWLKDKPTCP 95
                  99*******8844334.59**********...9*********9 PP

>> Prok-RING_4  Prokaryotic RING finger family 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.4   7.0   1.4e-07   0.00017       1      42 [.      57     103 ..      57     106 .. 0.85

  Alignments for each domain:
  == domain 1  score: 21.4 bits;  conditional E-value: 1.4e-07
  Prok-RING_4   1 CvlCgeq...ekkailepCgHlvCkeCfdsk..dlssCPlCqrrisk 42 
                  Cv+C  +   + ++ + pC+H + k+C +++  d  +CP Cqr + +
   KOO21464.1  57 CVICLCEydeGDEMHMLPCAHGFHKKCVSQWlkDKPTCPACQRDVRE 103
                  888887666689999****************75555*******9865 PP

>> zf-ANAPC11  Anaphase-promoting complex subunit 11 RING-H2 finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.9   7.0   1.7e-05     0.021      35      79 ..      57      99 ..      37     104 .. 0.74

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 1.7e-05
                -TTCSTTTTTS-.EEEBTTS-EEEHHHHHHHHHHHSTSSB-TTTSS CS
  zf-ANAPC11 35 cpsckfpGddcp.lvlGkckhnfhlhcilkwletetskglcpmcrq 79
                c  c    d+   + +  c h fh++c+ +wl+    k  cp c++
  KOO21464.1 57 CVICLCEYDEGDeMHMLPCAHGFHKKCVSQWLKD---KPTCPACQR 99
                555555444443133446**************86...567998876 PP

>> RINGv  RING-variant domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   6.3   3.5e-05     0.042       1      48 []      57      97 ..      57      98 .. 0.81

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 3.5e-05
                ETTTTEE-SSSS.--B-SS--STCCCSB-HHHHHHHHHHTCT-SB-TTT CS
       RINGv  1 CriCleeeeese.plispCkCrGslklvHesClekWldekeantqCeiC 48
                C iCl+e +e +   + pC  +     +H++C+++Wl+    + +C  C
  KOO21464.1 57 CVICLCEYDEGDeMHMLPCA-H----GFHKKCVSQWLKD---KPTCPAC 97
                99*****9887746677886.4....5**********99...6667766 PP

>> FANCL_C  FANCL C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   9.1   0.00015      0.18       2      46 ..      54      93 ..      53     105 .. 0.87

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 0.00015
                --S-SSS--SS-TT-----B--S-TT----B-SGGGHHHHHHHHS CS
     FANCL_C  2 eveCgiCyayrldsgevpdisCdnekCnkkfHsaCLkeWlrslke 46
                e +C iC+++ ++ +e+         C++ fH++C+ +Wl+  ++
  KOO21464.1 54 EASCVICLCEYDEGDEMHMLP-----CAHGFHKKCVSQWLKDKPT 93
                679*********999988765.....7899**********98765 PP

>> YdjO  Cold-inducible protein YdjO
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.1   0.3     0.067        80      31      51 ..      46      66 ..      45      75 .. 0.71
   2 ?    9.6   0.1   0.00061      0.73      37      54 ..      89     106 ..      85     107 .] 0.84

  Alignments for each domain:
  == domain 1  score: 3.1 bits;  conditional E-value: 0.067
        YdjO 31 RdnFsfeeePtCplCkseMvk 51
                Rd  +++ e +C +C  e  +
  KOO21464.1 46 RDALASKGEASCVICLCEYDE 66
                8899999999**998666544 PP

  == domain 2  score: 9.6 bits;  conditional E-value: 0.00061
        YdjO  37 eeePtCplCkseMvkevr 54 
                 +++PtCp C+ +  ++ r
  KOO21464.1  89 KDKPTCPACQRDVREDLR 106
                 79********99887766 PP

>> Zn_ribbon_17  Zinc-ribbon, C4HC2 type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   6.7   0.00017       0.2       5      47 ..      55      96 ..      51     100 .. 0.81

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00017
  Zn_ribbon_17  5 ksCayCelav.kgrvvlcgvCeHvlHasCarewfenddlaeCps 47
                   sC++C  +  +g  +    C H  H+ C+++w++ +    Cp+
    KOO21464.1 55 ASCVICLCEYdEGDEMHMLPCAHGFHKKCVSQWLKDKP--TCPA 96
                  68999988763577888899*************98665..8885 PP

>> zf-RING_10  zinc RING finger of MSL2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   6.4   0.00053      0.64       2      45 ..      56     100 ..      55     105 .. 0.91

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.00053
  zf-RING_10   2 sCvvCckLLvdPlepkekeCqHyvCrlCvgkkkklkpsCsqCk.d 45 
                 sCv+C     +  e ++  C H   ++Cv +  k kp+C+ C+ d
  KOO21464.1  56 SCVICLCEYDEGDEMHMLPCAHGFHKKCVSQWLKDKPTCPACQrD 100
                 89***99999999999**************************844 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (107 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       514  (0.0286686); expected 358.6 (0.02)
Passed bias filter:                      269  (0.0150036); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                        15  (0.000836633); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              15  [number of targets reported over threshold]
# CPU time: 0.34u 0.22s 00:00:00.56 Elapsed: 00:00:00.37
# Mc/sec: 877.51
//
Query:       KOO21465.1  [L=202]
Description: 30s ribosomal protein s13 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    6.9e-17   62.0   0.1    8.5e-16   58.5   0.1    2.0  1  Ribosomal_S13  Ribosomal protein S13/S18


Domain annotation for each model (and alignments):
>> Ribosomal_S13  Ribosomal protein S13/S18
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.5   0.1   4.8e-20   8.5e-16       1     128 []      80     194 ..      80     194 .. 0.92

  Alignments for each domain:
  == domain 1  score: 58.5 bits;  conditional E-value: 4.8e-20
  Ribosomal_S13   1 RilgtdidgkkkveialtaikGiGrrkakiilkkadvdedkrigelteeeiekieeivenkaqykipnwinrqkdikdGkdshvvendlrrklred 96 
                    R+    ++ +k  e+al  ++G Gr ++k ++++++v  + ++  + e +   i+  +                 i   + s+     lr+++  +
     KOO21465.1  80 RVQTYTVPLDKPAEFALPRVYGYGRSRSKWLAAEVGVFGNCKLMRMRESQRAYIRRALGAA-------------CIAYDDPSKAAGAALRKEVGLN 162
                    778889999*************************************************992.............23334456788999******** PP

  Ribosomal_S13  97 ieRlkkirsyrGlRHkrGlkvRGQrTkttgRt 128
                    i+Rlk+ir+yrG+RH+  l+ RGQrT+t+++t
     KOO21465.1 163 IQRLKDIRCYRGIRHELRLPSRGQRTRTNAKT 194
                    *****************************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (202 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       327  (0.0182386); expected 358.6 (0.02)
Passed bias filter:                      284  (0.0158403); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.26s 00:00:00.62 Elapsed: 00:00:00.37
# Mc/sec: 1615.28
//
Query:       KOO21466.1  [L=71]
Description: hypothetical protein Ctob_001541 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (71 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       177  (0.00987227); expected 358.6 (0.02)
Passed bias filter:                      146  (0.00814323); expected 358.6 (0.02)
Passed Vit filter:                         8  (0.000446204); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.26s 00:00:00.58 Elapsed: 00:00:00.40
# Mc/sec: 532.10
//
Query:       KOO21467.1  [L=303]
Description: protein phosphatase 1 regulatory subunit 36 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.4e-13   50.8   2.1    5.2e-10   39.0   0.5    2.1  2  PPPI_inhib    Protein phosphatase 1 inhibitor
  ------ inclusion threshold ------
       0.17   11.6   1.1       0.29   10.9   1.1    1.3  1  aGPT-Pplase2  Alpha-glutamyl/putrescinyl thymine pyrophosphor


Domain annotation for each model (and alignments):
>> PPPI_inhib  Protein phosphatase 1 inhibitor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.4   0.0   1.5e-05      0.13      56     105 ..       2      48 ..       1      60 [. 0.84
   2 !   39.0   0.5   5.8e-14   5.2e-10     160     217 ..     109     166 ..      98     181 .. 0.90

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 1.5e-05
  PPPI_inhib  56 vlfllpkeflqrkfvefmrkkavdrllhaLiiYleyfLrlvefvlirrdE 105
                 vl  ++ ++ +  f +f ++ ++d++lha i Y+  + +     +i+ dE
  KOO21467.1   2 VLAAMKYKVHSAAFKKFCKSDTMDTFLHACIEYFAVYFEAR---KIEEDE 48 
                 788899999999***********************998754...666666 PP

  == domain 2  score: 39.0 bits;  conditional E-value: 5.8e-14
  PPPI_inhib 160 vkiSdtikdkkffeqflavatqivWivlrRraytvieeEinRLfRsehFvikrreyle 217
                 ++ ++t+++++ffe+++ ++  + + +  R++++ ie E++R+fRs++F++++r+  +
  KOO21467.1 109 SNYANTQQERAFFESLYDFSKRVLFSINNRKHWHAIEDELDRVFRSQYFNLSQRKNSS 166
                 57789**********************************************9999876 PP

>> aGPT-Pplase2  Alpha-glutamyl/putrescinyl thymine pyrophosphorylase clade 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   1.1   3.2e-05      0.29      60     148 ..     113     194 ..      91     195 .. 0.75

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 3.2e-05
  aGPT-Pplase2  60 vegnpqefeewlnnnaerlkekgrF.gnhrrye...krklaavvqs.yvdwinryggheaffaailkevgeepkekFdalyksvqsvkgFGrla 148
                    +++ ++f+e l + ++r+     F  n r+++   +++l +v++s y+++ +r    ++  a+    ++++++ +F++ly++    +gFGr a
    KOO21467.1 113 NTQQERAFFESLYDFSKRV----LFsINNRKHWhaiEDELDRVFRSqYFNLSQR----KNSSAK----NNSSAQVSFKELYEKHGGAEGFGRAA 194
                   4566677788788878888....785699****999999999998745555555....332222....3378889*****************86 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (303 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       724  (0.0403815); expected 358.6 (0.02)
Passed bias filter:                      473  (0.0263818); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.47u 0.22s 00:00:00.69 Elapsed: 00:00:00.39
# Mc/sec: 2351.98
//
Query:       KOO21468.1  [L=504]
Description: protein serine threonine kinase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    3.9e-64  216.6   0.0      5e-64  216.2   0.0    1.1  1  Pkinase      Protein kinase domain
      2e-27   96.1   0.0    2.6e-27   95.7   0.0    1.1  1  Pkinase_Tyr  Protein tyrosine kinase
    8.2e-15   55.2   0.0    1.6e-14   54.2   0.0    1.4  1  PH           PH domain
    7.6e-07   29.7   0.9    1.6e-06   28.7   0.9    1.5  1  Pkinase_C    Protein kinase C terminal domain
    4.3e-06   27.1   0.0    1.2e-05   25.6   0.0    1.8  2  PH_11        Pleckstrin homology domain
    1.2e-05   24.8   0.5    0.00042   19.7   0.1    2.4  2  Kinase-like  Kinase-like
    0.00055   19.6   0.0       0.55    9.8   0.0    2.2  2  FTA2         Kinetochore Sim4 complex subunit FTA2
     0.0009   19.6   0.0     0.0028   18.0   0.0    1.8  2  PH_9         Pleckstrin homology domain
  ------ inclusion threshold ------
      0.033   13.9   0.1      0.087   12.6   0.0    1.7  2  PH_17        PH domain


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  216.2   0.0   2.5e-67     5e-64       1     256 [.     160     405 ..     160     417 .. 0.93

  Alignments for each domain:
  == domain 1  score: 216.2 bits;  conditional E-value: 2.5e-67
                 EEEEEEEEEESSEEEEEEEETTTTEEEEEEEEECHCHCHHHH....HHHHHHHHHHHHHS...CTTB--EEEEEEESSEEEEEEE--TTEBHHHHHHHH CS
     Pkinase   1 yekleklGeGsfGkVykaveketgkivAvKkikkekakkkke....kkvlrEikilkklk...hpnivrlyevfeekdelylvleyveggeladllerk 92 
                 +e l+ +G+G++GkV+++++++tg+ +A+K++kke++  +++    +++++E ++l+ ++   hp+i+ l+++f+++ +ly vl++++gg+l  ll+r 
  KOO21468.1 160 FELLKVIGRGTYGKVMQVRRRDTGEVYAMKVLKKENIFARNDpkdlQHTIAERNVLALINtqeHPFILGLKYAFHTPAKLYYVLNFCNGGDLYYLLSRC 258
                 577899******************************9988888899**********9999999************************************ PP

                 SS--HHHHHHHHHHHHHHHHHHHHTTEE-SS-SGGGEEEETTTEEEE-SGTTSEESSSSCSBCTTTSCGGGS-HHHHTTSCBSHHHHHHHHHHHHHHHH CS
     Pkinase  93 gslseeeakkiakqilegleylHskgiiHrDlKpeNiLidekgelKitDFGlakelessskltsfvgtseYlAPEvlkeneyskkvDvWslGvilyell 191
                 ++++e++a+++a +i+ +l++lH+ g+i+rDlKpeN+L+  +g++K+tDFGl+ke ++   +++f+gt+ YlAPE+  ++ y+ +vD+WslG++l+e++
  KOO21468.1 259 KKFKEAQARFYAGEIFLALQHLHKLGVIYRDLKPENVLLYGDGHVKLTDFGLSKESST---AETFCGTPVYLAPEIWLRKTYGFEVDWWSLGCVLFEMV 354
                 ******************************************************9888...56************************************ PP

                 HSS-STTTSSHHHHHHHHHHTHHHHHHHCTSHH...HHHTTS-HHHHHHHHHHT-SSGCCSTTHH CS
     Pkinase 192 tgkppfsgekgkekvekeldqlekilkilgetkeklpeaseiseeakdllkkllkkdpkkRltae 256
                 +  ppf+g++ k+ ++k +++              +p    + +e+++ +++ll++dp +Rl+ e
  KOO21468.1 355 SSLPPFWGDTIKDVYKKVIHT--------------TPAFPPMTPECQSCIERLLERDPARRLGSE 405
                 *******66666655555555..............7999999*******************9865 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   95.7   0.0   1.3e-30   2.6e-27       2     249 ..     161     401 ..     160     405 .. 0.84

  Alignments for each domain:
  == domain 1  score: 95.7 bits;  conditional E-value: 1.3e-30
                  EEEEEEEEESSEEEEEEEEETTTTSSEEEEEEEEE.STTSSHHHHHHHHHHHHHHHTS...-BTTB--EEEEEESSSSEEEEEE--TTEBHHHHHHHT CS
  Pkinase_Tyr   2 elgkklGeGafGkVvegtlkgekekkevkVavKtl.keeateeekeelleeakimkkl...khpnivkllgvctkeepllivteyvkgGdLlkfLrkk 95 
                  el k +G+G++GkV++ + +++ e   +kV  K    ++++ ++ ++ + e +++  +   +hp i+ l  +     +l+ v+++++gGdL   L + 
   KOO21468.1 161 ELLKVIGRGTYGKVMQVRRRDTGEVYAMKVLKKENiFARNDPKDLQHTIAERNVLALIntqEHPFILGLKYAFHTPAKLYYVLNFCNGGDLYYLLSRC 258
                  67899***************7777777777666543345566667777777766554322689**********99*****************999998 PP

                  CTTTSBHHHHHHHHHHHHHHHHHHHHTTEEEST-SGGGEEEEETTEEEE-STTTHEETTTSSEEEETTSSTSGGGGS-HHHHHHSEEEHHHHHHHHHH CS
  Pkinase_Tyr  96 ekekltlkdllsfalqvAkGmeyLeskklvHrdlaarNvLlsenkvvkisDfGLardiekddeyvkkeeaklpvkWmapEslkekkftsksDvWsfGv 193
                    +k++  +   +a ++  ++++L++  ++ rdl   NvLl  + +vk++DfGL+++       ++++ + +pv ++apE++ +k++  + D Ws G 
   KOO21468.1 259 --KKFKEAQARFYAGEIFLALQHLHKLGVIYRDLKPENVLLYGDGHVKLTDFGLSKES-----STAETFCGTPV-YLAPEIWLRKTYGFEVDWWSLGC 348
                  ..9999**************************************************98.....44455555565.9********************** PP

                  HHHHHHTTSSGTTTTSHHHHHHHHHHTTEES-BBTTSBHHHHHHHHHHT-SSGGGS CS
  Pkinase_Tyr 194 llwEiftlgespypglkneevleklkegkrlekpekcpeelyelmkkcweedpeeR 249
                  +l+E+++ +  p++g + ++v++k+ + +    p   ++e ++ +++ +e+dp++R
   KOO21468.1 349 VLFEMVS-SLPPFWGDTIKDVYKKVIHTTPAFPPM--TPECQSCIERLLERDPARR 401
                  *******.99**************98877665554..5666666666666666666 PP

>> PH  PH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.2   0.0   8.2e-18   1.6e-14      17     101 ..      29     115 ..      11     118 .. 0.91

  Alignments for each domain:
  == domain 1  score: 54.2 bits;  conditional E-value: 8.2e-18
                 SEEEEEEEEETTEEEEESST.....TCTTESSEEEEEESTTEEEEEEECTTSSSSTSEEEEEESTSSSTEEEEEEESSHHHHHHHHHHHH CS
          PH  17 swkkrwfvLkdsellyyknd.....ksekdkepkgsislsncevvevvatedpkrkfcfelriverngsrtyllqasseeerkeWikaiq 101
                 swk+rwfvL++  l yyk +     + ++  e+kg+i l++c+v+ ++ +e  ++ +cf+++ +  ++ ++y+++a++ + r +Wi+a +
  KOO21468.1  29 SWKERWFVLDGHLLKYYKGSgadgtSVDTTGELKGVIALQGCQVTTCEPKEADGKQCCFKITPA--SR-KVYIIKAPDVDTRDSWIEAVR 115
                 9***********************99999****************999788**********777..77.******************975 PP

>> Pkinase_C  Protein kinase C terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.7   0.9   8.2e-10   1.6e-06       3      46 .]     440     479 ..     439     479 .. 0.96

  Alignments for each domain:
  == domain 1  score: 28.7 bits;  conditional E-value: 8.2e-10
   Pkinase_C   3 sdeDtsNFDpeFTeedprdtppddmpagspltssvqenFrGFtY 46 
                 s eDt+NF   FT ++  d+  d     s lt s+ ++F+GFtY
  KOO21468.1 440 SSEDTQNFHKAFTGQKAIDSVTD----LSALTDSQEKHFEGFTY 479
                 88**************9999999....9***************9 PP

>> PH_11  Pleckstrin homology domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.6   0.0   6.2e-09   1.2e-05      11     103 ..      28     115 ..      20     117 .. 0.87
   2 ?   -3.2   0.0       5.7   1.1e+04      63      84 ..     435     456 ..     421     464 .. 0.62

  Alignments for each domain:
  == domain 1  score: 25.6 bits;  conditional E-value: 6.2e-09
       PH_11  11 kaWkrrwfavlkdgvLeyYksekkkvvkhviklSngseaklkadl..isaalfkidsirssksddllleistetkifflkgdsneeteeWvealk 103
                 ++Wk+rwf vl    L+yYk +++         S    + lk ++  +  ++++ + +++  ++ ++++   + k++++k+ + +++  W+ea++
  KOO21468.1  28 RSWKERWF-VLDGHLLKYYKGSGADG------TSVDTTGELKGVIalQGCQVTTCEPKEADGKQCCFKITPASRKVYIIKAPDVDTRDSWIEAVR 115
                 69******.***********999998......7778888887666114557779999************************************97 PP

  == domain 2  score: -3.2 bits;  conditional E-value: 5.7
       PH_11  63 idsirssksddllleistetki 84 
                 +++ +ss+ ++ + +++t++k 
  KOO21468.1 435 KSKMASSEDTQNFHKAFTGQKA 456
                 4455556667777777787775 PP

>> Kinase-like  Kinase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.9   0.0     0.029        58      18      61 ..     164     207 ..     159     222 .. 0.88
   2 !   19.7   0.1   2.1e-07   0.00042     157     253 ..     277     363 ..     255     401 .. 0.77

  Alignments for each domain:
  == domain 1  score: 2.9 bits;  conditional E-value: 0.029
  Kinase-like  18 ellkkgdrsvvfevkdqetgeplavkvfllpseaskkdlerlke 61 
                  +++++g  ++v++v+   tge  a+kv   ++  +++d + l++
   KOO21468.1 164 KVIGRGTYGKVMQVRRRDTGEVYAMKVLKKENIFARNDPKDLQH 207
                  689999**********************9999999999888876 PP

  == domain 2  score: 19.7 bits;  conditional E-value: 2.1e-07
  Kinase-like 157 aanLqakglvhgkftvdnllldekgglmlggftaLvragtkvvlsevekgfaPpEllgsrggytrknktkmthkldaWqlGlviyriwclklPltla 253
                   ++L+++g++  +++++n+ll  +g ++l++f+      t      +++ +aP E+  +          ++ +++d W lG v + + +   P+  +
   KOO21468.1 277 LQHLHKLGVIYRDLKPENVLLYGDGHVKLTDFGLSKESSTAETFCGTPVYLAP-EIWLR---------KTYGFEVDWWSLGCVLFEMVSSLPPFWGD 363
                  489*****************************854444444444666665555.55554.........36899***************998888554 PP

>> FTA2  Kinetochore Sim4 complex subunit FTA2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.8   0.0   0.00028      0.55      22      63 ..     158     203 ..     149     226 .. 0.72
   2 !    7.5   0.0    0.0014       2.8     180     204 ..     272     296 ..     259     311 .. 0.77

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.00028
        FTA2  22 kdiefleyLgkglhsiVlkvkirgk..eYALKlFrfleaeele..e 63 
                  d+e+l+++g+g+ + V++v+ r+   +YA+K+ ++ +    +  +
  KOO21468.1 158 GDFELLKVIGRGTYGKVMQVRRRDTgeVYAMKVLKKENIFARNdpK 203
                 589******************987666*****98877544433433 PP

  == domain 2  score: 7.5 bits;  conditional E-value: 0.0014
        FTA2 180 kllrdlkklhklgIvvrDlkeenyi 204
                 ++   l+ lhklg++ rDlk+en++
  KOO21468.1 272 EIFLALQHLHKLGVIYRDLKPENVL 296
                 5667899***************975 PP

>> PH_9  Pleckstrin homology domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.0   0.0   1.4e-06    0.0028      24     115 ..      28     115 ..      25     119 .. 0.79
   2 ?   -3.3   0.0       5.6   1.1e+04      96     117 ..     194     215 ..     188     216 .. 0.70

  Alignments for each domain:
  == domain 1  score: 18.0 bits;  conditional E-value: 1.4e-06
        PH_9  24 rgWkevyavlkklvLylykdeeesesaetedlkslknakllgkirlhhaLaek..asdYkkkshvFrLqtadgaeylfqtsdakevqeWvdtiN 115
                 r+Wke + vl +  L+ yk  + +  + + ++ +     l g i+l+    +   +++   k+  F+++ a++++y+++++d +  ++W++++ 
  KOO21468.1  28 RSWKERWFVLDGHLLKYYKGSG-ADGTSVDTTGE-----LKGVIALQGCQVTTcePKEADGKQCCFKITPASRKVYIIKAPDVDTRDSWIEAVR 115
                 89****************9944.33444444444.....4555999876433335999999*****************************9975 PP

  == domain 2  score: -3.3 bits;  conditional E-value: 5.6
        PH_9  96 eylfqtsdakevqeWvdtiNyv 117
                 e +f+ +d+k++q+ + + N+ 
  KOO21468.1 194 ENIFARNDPKDLQHTIAERNVL 215
                 4567778888888777776665 PP

>> PH_17  PH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   4.4e-05     0.087       8      57 ..      65     114 ..      58     116 .. 0.81
   2 ?   -3.5   0.0       4.6   9.2e+03      43      54 ..     257     268 ..     253     270 .. 0.76

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 4.4e-05
       PH_17   8 ipLklcyvar.alkssdpenrllEihSpDgrealiLRckdeaeAssWfeAi 57 
                 i L+ c v+    k +d  + ++ i +p +r+  i++++d+++ +sW eA+
  KOO21468.1  65 IALQGCQVTTcEPKEADGKQCCFKI-TPASRKVYIIKAPDVDTRDSWIEAV 114
                 7788899999445566779999999.5777888899*************97 PP

  == domain 2  score: -3.5 bits;  conditional E-value: 4.6
       PH_17  43 RckdeaeAssWf 54 
                 Rck  +eA++ f
  KOO21468.1 257 RCKKFKEAQARF 268
                 999999998766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (504 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       467  (0.0260472); expected 358.6 (0.02)
Passed bias filter:                      409  (0.0228122); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.52u 0.26s 00:00:00.78 Elapsed: 00:00:00.40
# Mc/sec: 3776.68
//
Query:       KOO21469.1  [L=166]
Description: hypothetical protein Ctob_001531 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (166 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       457  (0.0254894); expected 358.6 (0.02)
Passed bias filter:                      201  (0.0112109); expected 358.6 (0.02)
Passed Vit filter:                        12  (0.000669307); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.25s 00:00:00.63 Elapsed: 00:00:00.41
# Mc/sec: 1226.12
//
Query:       KOO21470.1  [L=439]
Description: fructose-bisphosphate aldolase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    4.1e-89  298.8   0.0    4.8e-89  298.6   0.0    1.0  1  F_bP_aldolase  Fructose-bisphosphate aldolase class-II


Domain annotation for each model (and alignments):
>> F_bP_aldolase  Fructose-bisphosphate aldolase class-II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  298.6   0.0   2.7e-93   4.8e-89       3     279 ..      67     408 ..      65     409 .. 0.92

  Alignments for each domain:
  == domain 1  score: 298.6 bits;  conditional E-value: 2.7e-93
                    HHHHHHHHHHHT--EEEEE--SHHHHHHHHHHHHHHTS-EEEEE-HHHHHHHH-.............HHHHHHHHHHHHHHHHT...-EEEEEE-- CS
  F_bP_aldolase   3 lkellkkAkeegyavgafnvtnletvkavleaaeeaksPvIlqlsegaaakyag.............gaealaelvraaaeaykkasvpvalhlDH 85 
                    l +llk+Ake+gya++a+n++++++v+a+leaa++a++P+++q+s g+a++yag             ga + a +vra+ae+y+   vpv+lh+DH
     KOO21470.1  67 LMDLLKDAKEKGYAIPAVNCVTSSSVNACLEAARKADAPIMIQFSSGGAQFYAGkgldnkdytaaiaGAVSGAYHVRAMAEQYG---VPVVLHTDH 159
                    5789************************************************99***************************888...********* PP

                    --G.....HHHHHHHHHH........S-SEEEE--TTS-HHHHHHHHHHHHHHHHHTT-EEEEE-----------....TT-TTTS--HHHHHHHH CS
  F_bP_aldolase  86 gak.....leglkkaiea........gfsSvMiDgSelpleeNialtkevverahalgvsvEaElGriggeedgv....vaeeklyTdpeeaeefv 164
                    +ak     ++g+++a e         +fsS+M+D+Se+pleeNi+++ e++er++++++++E+ElG++ggeedgv    +++e+lyT+pee++++ 
     KOO21470.1 160 CAKkllpwMDGMLAASERyykmhgepLFSSHMLDLSEEPLEENIDICVEYMERMAKMDMLLEMELGITGGEEDGVnnedANQEDLYTKPEEVWAVT 255
                    ********9999999999999999999************************************************655444444************ PP

                    HHHH.....-EEEE--SS---SS--SS...--THHHHHHHHHH............--SEE-SGTTS-HHHHHHHHHTTEEEEEE-HHHHHHHHHHH CS
  F_bP_aldolase 165 eetg.....vdalAvaiGnvHGvykpk.pkLdferlkeiqkav............vplVlHGgsgvpdeeirkaiklGvvKiNidtdlrlaytkav 242
                    +++       +++A+a+GnvHGvy p+  kL +++lk+ q+++            v++V+HGgsg+  ++ir+ i +Gv+K+Nidtd++++y++++
     KOO21470.1 256 KALMkvpnaKFTIAAAFGNVHGVYAPGnVKLTPKILKNSQAYIseqlgmpqgsmpVSFVFHGGSGSDINDIRESIGYGVIKMNIDTDTQWSYWDGI 351
                    ***9999999*****************555******************8888855557************************************** PP

                    HHG...................GE-HH.H-HHHHHHHHHHHHHHHHHHHHHHTT-SS CS
  F_bP_aldolase 243 kke...................kenkk.ydprkllkeaeeamkevvkekiellgsag 279
                    + +                   k+nkk ydpr  +++ae+a+++++++++e+l++ g
     KOO21470.1 352 RAYekenrdylqgqignpegadKPNKKyYDPRMPIRAAEKACAKRLMQAFEDLKCVG 408
                    7775555666666555555554499***************************99876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (439 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       406  (0.0226449); expected 358.6 (0.02)
Passed bias filter:                      383  (0.021362); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.51u 0.26s 00:00:00.77 Elapsed: 00:00:00.42
# Mc/sec: 3104.83
//
Query:       KOO21471.1  [L=1939]
Description: endonuclease-reverse transcriptase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.8e-06   27.5   1.0      2e-05   25.2   0.0    2.6  2  DUF4326   Domain of unknown function (DUF4326)
    0.00018   21.1   0.0    0.00036   20.1   0.0    1.5  1  RVT_1     Reverse transcriptase (RNA-dependent DNA polymerase


Domain annotation for each model (and alignments):
>> DUF4326  Domain of unknown function (DUF4326)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.2   0.0   2.2e-09     2e-05      17      79 ..     135     230 ..     116     234 .. 0.83
   2 ?   -1.1   0.2      0.36   3.2e+03      63      79 ..    1280    1295 ..    1236    1300 .. 0.81

  Alignments for each domain:
  == domain 1  score: 25.2 bits;  conditional E-value: 2.2e-09
     DUF4326  17 RgsklgNpFvvgqe...lgereevvekyreyleer.............................aekdeelkaaleeLrgkeLa.CwCkpkpCHad 79 
                 R+  lgNpF++g +    + r+ v+e y+ + e+                              +++ + l +   eL+++ +  C C+pk+CH  
  KOO21471.1 135 RQGLLGNPFKMGVDgkdEALRDLVCECYEIWYEQGkdayetavekglpiecvvpglgrvnptdiDNEIDSLVNIAVELGKRVVLdCTCEPKRCHLR 230
                 5667*******998777788999*********99889999999999999999999888888887777777999999999887777*********65 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 0.36
     DUF4326   63 rgkeLa.CwCkpkpCHad 79  
                  +g++L  C C+  +CHa+
  KOO21471.1 1280 EGETLPlCICP--ACHAE 1295
                  57788789996..48876 PP

>> RVT_1  Reverse transcriptase (RNA-dependent DNA polymerase)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.1   0.0     4e-08   0.00036       1     169 [.     484     672 ..     484     700 .. 0.80

  Alignments for each domain:
  == domain 1  score: 20.1 bits;  conditional E-value: 4e-08
                 EE-TT......S-EEE......-THHHHCTB--.........-------HHHH................HCCHTS--EEEEEEBCCGCCCSBB-GGGGG CS
       RVT_1   1 ipKkg.....pgsyRpisllsvdykalnkliakrLkdvlekllsenqpgfrpgrstldav...edllkalkkkkkaklllklDlkkaFdsvpleellrk 91 
                 ipK+g     ++++R i +  ++ k++  +i     +v+  + +    gf+pgr++ ++    +  l+ + + ++  ++ + D + +F s++ + +   
  KOO21471.1 484 IPKPGkdrckLSGWREIWIQAHLWKLVVGAILPECAEVIAHTRPWCNAGFEPGRGCPEQSaalRARLELHMRLRQPLHIYFQDYSVFFPSISRQLVAFI 582
                 788888899999999998888888888888888555554555555578***********999988889999**************************** PP

                 GG-EEET.........................TEEEEESB--ST-TTHHHHHHHHHHHHHTT-T...................TEEECTTE CS
       RVT_1  92 ltafkvptklinliksflstrsfsvrvngeeskgryekkglpqGsvlSPllfnlfmnellrelrkra.............kgvtllrYaDD 169
                 l++++v+t+ +++++++  +   +++  g  ++ ++  +g p G+v SPl +  +   + r l++ +                  l YaDD
  KOO21471.1 583 LHELGVNTISVQILREVQDQVMGAFKTAGGPTELCPMLRGEPIGGVESPLFSLPVAALVQRALES-YvpgsplpdrrelrVAALQLWYADD 672
                 ******************99999****99999*****************7554444444444444.3366666666554433333446666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1939 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       521  (0.0290591); expected 358.6 (0.02)
Passed bias filter:                      291  (0.0162307); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.91u 0.25s 00:00:01.16 Elapsed: 00:00:00.44
# Mc/sec: 13320.68
//
Query:       KOO21472.1  [L=107]
Description: hypothetical protein Ctob_002430, partial [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (107 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       192  (0.0107089); expected 358.6 (0.02)
Passed bias filter:                      180  (0.0100396); expected 358.6 (0.02)
Passed Vit filter:                         9  (0.00050198); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.24s 00:00:00.62 Elapsed: 00:00:00.42
# Mc/sec: 773.79
//
Query:       KOO21473.1  [L=461]
Description: hypothetical protein Ctob_002432 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
     0.0061   16.1   0.0      0.012   15.2   0.0    1.6  1  Exo_endo_phos  Endonuclease/Exonuclease/phosphatase family


Domain annotation for each model (and alignments):
>> Exo_endo_phos  Endonuclease/Exonuclease/phosphatase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.0   6.6e-07     0.012      13     155 ..     140     329 ..     107     414 .. 0.72

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 6.6e-07
                    HTHHHHHHHHHHHHHHCTT.....SEEE...............EEEEBSCTCHHHHHHHHH....................TTCEEEEECCH.... CS
                    xxxxxxxxxxxxxxxxxxx.....xxxx...............xxxxxxxxxxxxxxxxxx....................xxxxxxxxxxx.... RF
  Exo_endo_phos  13 lgssrrsdrladlltayda.....Dvlg...............LQEvdddelsriplllal....................ggflgasstsp.... 64 
                     +   r ++la+ l++ da     Dv                 + Ev+++++++++l   +                                   
     KOO21473.1 140 VQTEERDRALAETLEHEDAedgggDVGRgtalrfrgcealeaiIDEVKGRHAHMFMLSETHlhgkavddvadyigmrlgwqD---------Lskrc 226
                    5556677888888888877777776555677777777777777888888888888888855444444444444444444330.........03444 PP

                    .............ECSSSTTSSEEEEEECSTEEEEEEEEEEETSSSSGCEEEEEEEEEEEEEEE.......................CCCHHGHHH CS
                    .............xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.......................xxxxxxxxx RF
  Exo_endo_phos  65 .............tgggggggnggavlsrfpltslfrrtfiefndlvaalrreplaakleqlni.......................ashrdhdlv 124
                                    + g   g+ +++ + ++ +                           ++                       a+  + +  
     KOO21473.1 227 sagapeytpcviqAPAAKGEWAGVLLAYDPCVFKV------------------------IGTQVlvpgrllevevrmiddstkmliyACYMPQQNL 298
                    44444444444443444444444444444444333........................2222244444555555556666666667788888888 PP

                    HHHHHHHHHHHHHHHHHHTTSEEEEEEE-SS CS
                    xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Exo_endo_phos 125 rdlqllalllqvealnadrgapvivaGDfNa 155
                    +++ ++  + ++e++ +  ++p+++aGD+Na
     KOO21473.1 299 PKELHAKAWGKLEEALLVAHMPYVIAGDLNA 329
                    9999999999********************* PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (461 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       407  (0.0227007); expected 358.6 (0.02)
Passed bias filter:                      307  (0.0171231); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.51u 0.23s 00:00:00.74 Elapsed: 00:00:00.40
# Mc/sec: 3431.05
//
Query:       KOO21474.1  [L=398]
Description: carboxylesterase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    7.4e-53  180.2   0.0    1.2e-52  179.5   0.0    1.3  1  COesterase      Carboxylesterase family
    2.2e-08   34.3   5.8    0.00035   20.5   0.3    3.8  3  Abhydrolase_3   alpha/beta hydrolase fold
  ------ inclusion threshold ------
        0.1   12.7   0.4       0.32   11.1   0.4    1.8  1  Rod_cone_degen  Progressive rod-cone degeneration


Domain annotation for each model (and alignments):
>> COesterase  Carboxylesterase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  179.5   0.0     2e-56   1.2e-52      62     424 ..       2     377 ..       1     390 [. 0.79

  Alignments for each domain:
  == domain 1  score: 179.5 bits;  conditional E-value: 2e-56
                 --BESEECSSSSSCGHHCHHH.BES---EEEEEEESSSSSTTSSEEEEEEE--STTTS-BGCG..S-THHHHHHHTSEEEEE----HHHHH-B-SS... CS
  COesterase  62 spaCpqnaeksekeekeleaw.vsEDCLyLnvytPkekkeakkklPVlVwihGggfqtgsase..ydgsaLaaegnvivVtinYRlGvlGFlstgd... 154
                 ++ C+qn +  + +   +e +  +EDCL+Lnvy P+++     klPV+Vw++Ggg+ +g + +  ++gs+La +++vivVt++YRlG+lGFl  g    
  KOO21474.1   2 GAPCMQNPDGDPRPPGYEEGPpPNEDCLTLNVYRPASA-APGAKLPVMVWVYGGGLCSGYSGNaqFNGSQLALQQGVIVVTVSYRLGALGFLPIGAlpg 99 
                 578*****99999888777778*************985.889999************99874446***************************9965544 PP

                 .....TTSBS-HHHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHHSGGGTTSBSEEEEES--TTSTTTSBSHHHHHHHHHHHHTTS-CS CS
  COesterase 155 .....eeapGNvGllDqvlALrWVkenIasFGGdpervtlfGesAGaasvsllllsplsrglfkraIlqSGsalspwaiqkkarkrakklakkvgckas 248
                          G  G+ D++  L+WV+++I +FGG    +tlfGes+G+ + ++l++ p +rglf+ra lqSG +     +++      + la + +    
  KOO21474.1 100 fdfdgGGSGGMNGMNDVIVGLHWVRRHIGAFGGRATDITLFGESSGGYLSCVLSVAPAARGLFTRAALQSGPCAGGPPTSTGRGWGPSSLALAHNV--- 195
                 444434555667***********************************************************9988776666544444555555544... PP

                 SHHHHHHHHHCS-HHHHHHCCGG..SSSSSSTTC-SSS-B--SSS.....SSS-HH.HHHHCGC...CSEEEEEEETTTTHHHHCCHSTTTSSSSHHHH CS
  COesterase 249 sskelveclrsksaeelldaqek..aleasssklvsfaPvvdgdf.....lpekPe.ellkseg...kvplliGvnkdegllflaylldkeksvkkkee 336
                  s+ ++  l+  +  el +   +  ++ ++    +++aP + g f     + ++    + k+ g   +  lliG ++++g+   + ++++   +  +  
  KOO21474.1 196 -SQRVMADLNVSTLAELRSVSAElvQWPDELMSDLAVAPYFTGYFadsfvMGATTTdAAWKQ-GhinPDVLLIGHTSKDGTSAFYGTAPTLGLTPGDPV 292
                 .5666667777777777666666556667777788888888885533333444444144444.569666689**********99999999877777777 PP

                 HHHHHHHHHHHHHHHCCHHHHHHHHHHHHSTTTSSTCHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTT-SEEEEEEE--STTSSST...T CS
  COesterase 337 klsesllkdelyleaekkeelseaikeeytdeadrddaeksrkallelltdvlfkapvlrtaklhasrgspvYlYsfdyrnssskkp...k 424
                 ++++ ++++ l  +     + + +i  +y     +    + + a+l++  d+++++p+ r+a   as+g +v+ Y+f + + + + p   +
  KOO21474.1 293 QTDAAAYREALKAA---WGANAPQIEAQYP---LSIYGGSPQAAFLQADADAYVICPSYRLAGFAASAGRRVWSYEFAHFQPQRSGPqpaS 377
                 77777766666555...4678888999995...7788889999************************************998877773343 PP

>> Abhydrolase_3  alpha/beta hydrolase fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.9   0.2   2.6e-05      0.15       1      40 [.      48      87 ..      48      94 .. 0.96
   2 !   20.5   0.3   5.9e-08   0.00035      49      99 ..     113     163 ..     111     318 .. 0.76
   3 ?   -0.6   0.0      0.16   9.8e+02      26      40 ..     334     348 ..     327     351 .. 0.87

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 2.6e-05
                   EEEE--STTTS--TTTTHHHHHHHHHHHTSEEEEEE---T CS
  Abhydrolase_3  1 lvyfHGGGfvlgsldthdalcrelakelgavvvsvdYrlA 40
                   +v++ GGG ++g +  ++   ++la + g++vv v Yrl 
     KOO21474.1 48 MVWVYGGGLCSGYSGNAQFNGSQLALQQGVIVVTVSYRLG 87
                   6999**********************************96 PP

  == domain 2  score: 20.5 bits;  conditional E-value: 5.9e-08
                    HHHHHHHHHHHHHTHHHHTETTCEEEEEEETHHHHHHHHHHHHHHHTT--- CS
  Abhydrolase_3  49 vedalaalrwlaeqawelgadpsrivlaGdSaGGnlaaavalrardegepk 99 
                    ++d++  l+w++ +  ++g  ++ i+l+G+S GG l+ +++++ +++g  +
     KOO21474.1 113 MNDVIVGLHWVRRHIGAFGGRATDITLFGESSGGYLSCVLSVAPAARGLFT 163
                    78999*********88************************99988886544 PP

  == domain 3  score: -0.6 bits;  conditional E-value: 0.16
                    HHHTSEEEEEE---T CS
  Abhydrolase_3  26 kelgavvvsvdYrlA 40 
                    ++++a v+ + YrlA
     KOO21474.1 334 ADADAYVICPSYRLA 348
                    68999*********9 PP

>> Rod_cone_degen  Progressive rod-cone degeneration
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.4   5.3e-05      0.32      21      47 ..     369     395 ..     353     397 .. 0.88

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 5.3e-05
  Rod_cone_degen  21 nRvqPePsdvDGavvGsssdaDlqssG 47 
                      R  P P+ v Gav G ss ++ q sG
      KOO21474.1 369 QRSGPQPASVRGAVSGGSSHSNKQESG 395
                     5889********************998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (398 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       297  (0.0165653); expected 358.6 (0.02)
Passed bias filter:                      247  (0.0137766); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.47u 0.23s 00:00:00.70 Elapsed: 00:00:00.62
# Mc/sec: 1927.95
//
Query:       KOO21475.1  [L=260]
Description: short-chain dehydrogenase reductase sdr [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.2e-64  216.7   0.7    3.8e-64  216.5   0.7    1.0  1  adh_short_C2     Enoyl-(Acyl carrier protein) reductase
      1e-50  171.9   3.0    1.3e-50  171.6   3.0    1.1  1  adh_short        short chain dehydrogenase
      4e-13   49.7   2.4    5.9e-13   49.1   2.4    1.2  1  KR               KR domain
    1.5e-05   24.6   0.5    3.8e-05   23.3   0.5    1.6  1  Epimerase        NAD dependent epimerase/dehydratase family
    8.2e-05   21.7   1.3    9.8e-05   21.5   1.3    1.2  1  3Beta_HSD        3-beta hydroxysteroid dehydrogenase/isomeras
    0.00025   20.2   0.3    0.00038   19.6   0.3    1.2  1  RmlD_sub_bind    RmlD substrate binding domain
     0.0065   17.1   0.2      0.012   16.3   0.2    1.4  1  Methyltransf_25  Methyltransferase domain
     0.0091   16.5   0.2      0.022   15.3   0.2    1.6  1  Pyr_redox        Pyridine nucleotide-disulphide oxidoreductas
  ------ inclusion threshold ------
       0.01   15.1   0.0      0.017   14.3   0.0    1.3  1  Pyr_redox_2      Pyridine nucleotide-disulphide oxidoreductas
      0.025   14.0   0.1      0.038   13.4   0.1    1.3  1  GDP_Man_Dehyd    GDP-mannose 4,6 dehydratase
      0.037   13.9   0.2      0.059   13.2   0.2    1.3  1  3HCDH_N          3-hydroxyacyl-CoA dehydrogenase, NAD binding
       0.04   13.3   0.0      0.061   12.7   0.0    1.3  1  2-Hacid_dh_C     D-isomer specific 2-hydroxyacid dehydrogenas


Domain annotation for each model (and alignments):
>> adh_short_C2  Enoyl-(Acyl carrier protein) reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  216.5   0.7   2.5e-67   3.8e-64       1     232 [.      14     256 ..      14     258 .. 0.94

  Alignments for each domain:
  == domain 1  score: 216.5 bits;  conditional E-value: 2.5e-67
                   TTTTSHHHHHHHHHHHTT-EEEEEESSGGH.HHHHHHHHHHTTSE..E.EE--TTSHHHHHHHHHHHHHHHSSEEEEEE-----EGCSS-GGGH-HH CS
  adh_short_C2   1 GaasgIGraiAkalaeeGaevvltdlneea.kkrveelaeelgae..v.lecDVtdeeqvealveevvekfgklDilvnnagiapklkgpfletsre 93 
                   Ga sgIG ++Akal ++Ga+v + dl  +  +k+v+ + +  +++  v  +cDVtde++vea+++ v +k  ++Dil+nnagi     g +++++++
    KOO21475.1  14 GAGSGIGLEVAKALSKAGAQVHILDLTLDIsQKAVDGINATRPKQmcVaHACDVTDEKSVEATFDLVCSKAARIDILINNAGIGAV--GTVEQATKD 108
                   889***************************9*********999886547*************************************..********* PP

                   HHHHHHHHHTHHHHHHHHHHHH.HCTSC..CEEEEEEEGGGTSBSTTTTHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEE--BHCTGGGGSTT... CS
  adh_short_C2  94 efdraldvnlyslfllakaalp.lmkeg..gsivnlssvgaervvpnynaygaaKaalealtrylAvelgpkgiRvNavspgpikTlaasgikg... 184
                   e+d++ +vn+ ++f+++k+ ++ ++++g  gsivnl+s+++ +++++  ay+a+K+a+  +tr++A ++ +kgiR+N+v+pg ++T+ ++++ +   
    KOO21475.1 109 EMDKVYKVNVLGVFYCLKYGVKkMLADGkgGSIVNLASIASLIGLADRFAYSASKGAVLTMTRSVAIDYVKKGIRCNCVCPGRVHTPFVDAYLKkny 205
                   *******************99988887788*********************************************************9776644355 PP

                   ...HHHHHHHHHHHSTTSS-B-HHHHHHHHHHHCSGGGTT--SEEEEESTT CS
  adh_short_C2 185 ...fdelleelearaplgrlgtpeevaeaalfLasdeasyitGqtlvvDgG 232
                      ++e+ + l+a++p+gr+g+peeva+++l+L+sdea ++tG+   +DgG
    KOO21475.1 206 pgkEKEVFNTLAAWHPMGRMGKPEEVAALILYLCSDEAGFVTGAAYPIDGG 256
                   555778********************************************* PP

>> adh_short  short chain dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  171.6   3.0   8.6e-54   1.3e-50       1     189 [.       8     199 ..       8     204 .. 0.97

  Alignments for each domain:
  == domain 1  score: 171.6 bits;  conditional E-value: 8.6e-54
                 SEEEEESTTSHHHHHHHHHHHHTT-EEEEEESCHHHHHHHHHHHHHT..TSEEEEEE-TTTSHHHHHHHHHHHHHHHSSESEEEE---SS--SSGGGCS CS
   adh_short   1 kvvlvtGassGIGraiakelakeGakvvvvdrseekleevakelkee..gakalaiqvDvtdreevealvekavkklgkldvLvnNAGitgsgpfsels 97 
                 k ++vtGa+sGIG+++ak+l k+Ga+v ++d + +  +++++ ++++  ++  +a ++Dvtd+++vea+++ + +k  ++d+L+nNAGi  +g++++ +
  KOO21475.1   8 KSAVVTGAGSGIGLEVAKALSKAGAQVHILDLTLDISQKAVDGINATrpKQMCVAHACDVTDEKSVEATFDLVCSKAARIDILINNAGIGAVGTVEQAT 106
                 679********************************************988889999******************************************* PP

                 HHHHHHHHHHHTHHHHHHHHHHHHHHH.HCTTEEEEEEEEGGGTSB-TTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBSSHHHHH CS
   adh_short  98 eeewervievNltgvflltravlpaml.kqssGrIvnvsSvagkvpvagvaaYsAsKaavagltrslakelaptgirvnavaPGlvdTdmake 189
                 ++e+++v++vN+ gvf + +  +++ml ++++G+Ivn +S+a++ ++a   aYsAsK+av  +trs+a ++ ++gir+n+v+PG v T+++ +
  KOO21475.1 107 KDEMDKVYKVNVLGVFYCLKYGVKKMLaDGKGGSIVNLASIASLIGLADRFAYSASKGAVLTMTRSVAIDYVKKGIRCNCVCPGRVHTPFVDA 199
                 **************************99************************************************************98765 PP

>> KR  KR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.1   2.4   3.9e-16   5.9e-13       4     152 ..      11     162 ..       9     172 .. 0.86

  Alignments for each domain:
  == domain 1  score: 49.1 bits;  conditional E-value: 3.9e-16
                 EEETTTSHHHHHHHHHHHHHH.S-EEEEE-SS..--HHHHHHHHHHHHTT-EEEE----TT-HHHHHHHHHHHHHHSS---EEEE---------TTT-- CS
          KR   4 litGGlGgLGlelarwlaekg.arhlvllsRsaaadedskaliaelealgaevevvaaDvsdkdavealleeikaeeppikGvihaAgvlrdklleemt 101
                 ++tG+  g+Gle+a+ l + g + h++ l+ +   ++++ + i++ + +++ + + a+Dv+d+++vea+++ + +++++i   i+ Ag+ + +++e+ t
  KOO21475.1  11 VVTGAGSGIGLEVAKALSKAGaQVHILDLTLD--ISQKAVDGINATRPKQM-CVAHACDVTDEKSVEATFDLVCSKAARIDILINNAGIGAVGTVEQAT 106
                 89*******************45577778777..44555556776666555.66789****************************************** PP

                 HHHHHHHHTTTTHHHHH.....HHHHTTTS--SEEEEEEEHHHHH--TT-HHHHHH CS
          KR 102 aedleqvlapKvkGawn.....LhelledesldffvlfSSiagllgsagqanYaaa 152
                 ++++++v++  v G+       ++++l+d +   +v ++Sia+l+g a + +Y+a 
  KOO21475.1 107 KDEMDKVYKVNVLGVFYclkygVKKMLADGKGGSIVNLASIASLIGLADRFAYSAS 162
                 **************9753333367888889999********************996 PP

>> Epimerase  NAD dependent epimerase/dehydratase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.3   0.5   2.6e-08   3.8e-05       2     193 ..      11     204 ..      10     223 .. 0.75

  Alignments for each domain:
  == domain 1  score: 23.3 bits;  conditional E-value: 2.6e-08
                 EEETTTSHHHHHHHHHHHHCTSEEEEEES-STTTTCHHCHHC.........EEEE--TT-HHHHHHHHH.....HHT-SEEEE--S---HHHHHHSHHH CS
   Epimerase   2 lVtGatGfiGsalvkallekgyevigldrlssasntarledl.........elveldltdrsalerlfk.....eeqpdavihlAavggvaassedpad 86 
                 +VtGa   iG  ++kal ++g +v+ ld   + s++a +  +           + +d+td++++e+ f+       ++d+ i+ A++g v++  +  +d
  KOO21475.1  11 VVTGAGSGIGLEVAKALSKAGAQVHILDLTLDISQKAVDG-InatrpkqmcVAHACDVTDEKSVEATFDlvcskAARIDILINNAGIGAVGTVEQATKD 108
                 8********************9999999875554444433.257899999999*********999988633332459******************9999 PP

                 HHHHHTHHHHHHHHHHHHHTCTEEEEEEEGGGGTSCSSSSBSTCSTTS----SSHHHHHHHHHHHHHHHHHHHHT-EEEEEEESEEESTTS-TTSTTSH CS
   Epimerase  87 fieknlqgtlnlleaarkagvkrllflsSsevYGkdaeqpkeettltgplkpnspYaaaKlageklveayaaqyglnaiilrlfnlyGprngegevsrv 185
                  ++k  ++++  + ++ k+gvk++l  +      + a+    + +    l+ + +Y+a+K a+  +++++a +y   +  ++ +n + p+   +  + +
  KOO21475.1 109 EMDKVYKVNVLGVFYCLKYGVKKMLADGKGGSIVNLAS--IASLI---GLADRFAYSASKGAVLTMTRSVAIDY---VKKGIRCNCVCPG---RVHTPF 196
                 99988888888888999****99998776555555666..34444...67999999999999999999999888...4555556666666...334445 PP

                 HHHHHHHH CS
   Epimerase 186 ipalirki 193
                 + a+++k 
  KOO21475.1 197 VDAYLKKN 204
                 55555555 PP

>> 3Beta_HSD  3-beta hydroxysteroid dehydrogenase/isomerase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.5   1.3   6.6e-08   9.8e-05       1     108 [.      11     129 ..      11     180 .. 0.79

  Alignments for each domain:
  == domain 1  score: 21.5 bits;  conditional E-value: 6.6e-08
   3Beta_HSD   1 vvtGgaGFlGralvkeLvrleelkevrvlD..lrespelleelskvnvkk...viegDvtdkdkleeale.......gvdvvihlaslvdvag.....k 82 
                 vvtG++  +G ++ k+L +++   +v++lD  l++s++  + ++ ++ k+    + +Dvtd++++e+  +        +d++i  a++  v       k
  KOO21475.1  11 VVTGAGSGIGLEVAKALSKAG--AQVHILDltLDISQKAVDGINATRPKQmcvAHACDVTDEKSVEATFDlvcskaaRIDILINNAGIGAVGTveqatK 107
                 89*******************..59*****6667888888888888877788889*******9998865422222225799999999887765321225 PP

   3Beta_HSD  83 ltedeimkvnvkGTrnvleacvkagv 108
                 ++ d+++kvnv G       c+k gv
  KOO21475.1 108 DEMDKVYKVNVLGVFY----CLKYGV 129
                 5667889999998544....444444 PP

>> RmlD_sub_bind  RmlD substrate binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.6   0.3   2.6e-07   0.00038       4      82 ..      11     121 ..       8     129 .. 0.90

  Alignments for each domain:
  == domain 1  score: 19.6 bits;  conditional E-value: 2.6e-07
                    EEESTTSHHHHHHHHHCTTTSEEEEEE-TT.......................T--TTSHHHHHHHH.....HHH--SEEEE------HHHHHHS. CS
  RmlD_sub_bind   4 lvtGanGqlGseLakqlaeeglevlaltre.......................eldltdaeavaell.....keakpdvvvnaAAytavDkaEse. 70 
                    +vtGa+  +G e+ak+l+++g++v+ l+ +                       ++d+td+++v++++     k+a+ d+++n A   av  +E+  
     KOO21475.1  11 VVTGAGSGIGLEVAKALSKAGAQVHILDLTldisqkavdginatrpkqmcvahACDVTDEKSVEATFdlvcsKAARIDILINNAGIGAVGTVEQAt 106
                    79***********************9998899***********************************99999999*********999998888752 PP

                    ...HHHHHHHHTHHH CS
  RmlD_sub_bind  71 ...eeaayavnaeav 82 
                        ++ y+vn+ +v
     KOO21475.1 107 kdeMDKVYKVNVLGV 121
                    112678899999887 PP

>> Methyltransf_25  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.2   7.8e-06     0.012       4      76 ..      15      89 ..      12     108 .. 0.73

  Alignments for each domain:
  == domain 1  score: 16.3 bits;  conditional E-value: 7.8e-06
                     ET-TTSH.HHHHHHCTSTSSEEEEEESSHHHHHHHHHHHHHTTT..TEEEEESBCCGBSSSTTTEEEEEEEST.GGG CS
  Methyltransf_25  4 lGcGtGr.ltlalakrlgkakvtgvDiseemleaareraeeegl..nvefvqgdaedlpfedgsfDlvvssga.lhh 76
                     +G G G  +++al+k+ g a+v+ +D++ +  ++a   +++ ++   +  + +d++d +  +++fDlv+s  a + +
       KOO21475.1 15 AGSGIGLeVAKALSKA-G-AQVHILDLTLDISQKAVDGINATRPkqMCVAHACDVTDEKSVEATFDLVCSKAArIDI 89
                     4666665244455555.5.9999988887777777777777666546777999****99999********8776665 PP

>> Pyr_redox  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.2   1.5e-05     0.022       2      29 ..      10      38 ..       9      49 .. 0.86

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 1.5e-05
                EEEECSS.HHHHHHHHHHHHTTSEEEEEE CS
   Pyr_redox  2 vvvvGgG.yiglElAgalaelgkkVtvve 29
                +vv G+G  iglE+A+al++ g++V++++
  KOO21475.1 10 AVVTGAGsGIGLEVAKALSKAGAQVHILD 38
                688887746*****************986 PP

>> Pyr_redox_2  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   0.0   1.2e-05     0.017     141     174 ..       6      40 ..       2      60 .. 0.84

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 1.2e-05
                  -TSEEEEES-SH.HHHHHHHHHHHHT-EEEEEESS CS
                  xxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2 141 lpkrivvvGgGy.iGvElAaalaklgkevtlvear 174
                  + k++vv G+G  iG+E+A al+k+g++v++++  
   KOO21475.1   6 TGKSAVVTGAGSgIGLEVAKALSKAGAQVHILDLT 40 
                  55889****9865******************9865 PP

>> GDP_Man_Dehyd  GDP-mannose 4,6 dehydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.1   2.5e-05     0.038       2     108 ..      12     123 ..      11     137 .. 0.73

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 2.5e-05
                    EETTTSHHHHHHHHHHHHCT-CCEEEEEEESS-TTHHHHHCTTT...TTGCCEEEEE--TT-HHHHHHHHHHH.....T-SEEEE--S---HHH.. CS
  GDP_Man_Dehyd   2 iTGiaGfiGsylaelLlekgyevhgivrrsssfntgriehlakdpkeeleenlklhkgDltDssslerllaev.....qpdevynLAAqshVdv.. 90 
                    +TG    iG  +a+ L + g +vh+++ ++   + + ++ +      + ++    h +D+tD++s+e  ++ v     ++d  +n A+  +V++  
     KOO21475.1  12 VTGAGSGIGLEVAKALSKAGAQVHILD-LTLDISQKAVDGINAT---RPKQMCVAHACDVTDEKSVEATFDLVcskaaRIDILINNAGIGAVGTve 103
                    8888888*****************875.6666777888887653...3467899**************9976655555888888877666665411 PP

                    .HT.TSHHHHHHHHTHHHHH CS
  GDP_Man_Dehyd  91 .sf.ekPeytaevnvlGtlr 108
                        ++ +++++vnvlG++ 
     KOO21475.1 104 qATkDEMDKVYKVNVLGVFY 123
                    02213345667777777765 PP

>> 3HCDH_N  3-hydroxyacyl-CoA dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.2     4e-05     0.059       3      48 ..      11      57 ..       9      94 .. 0.75

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 4e-05
                EEE--SC.CHHHHHHHHHHTT-EEEEE-S-HHHHHHHHHHHHHHHHC CS
     3HCDH_N  3 aviGaGt.mGagiaavfasagleVvlvdiseealekalekiekslek 48
                 v GaG  +G ++a+++ +ag +V+++d + ++ +ka + i+++  k
  KOO21475.1 11 VVTGAGSgIGLEVAKALSKAGAQVHILDLTLDISQKAVDGINATRPK 57
                578999669*****************************999984433 PP

>> 2-Hacid_dh_C  D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   4.1e-05     0.061      33      82 ..       4      53 ..       1      79 [. 0.80

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 4.1e-05
                  -GTTSEEEEES-SH.HHHHHHHHHHHTT-EEEEESSSHHHHHCHHHHTCEE CS
  2-Hacid_dh_C 33 elsgktvGiiGlGr.IGqavakrlkafgmkviaydrskkkeeeeeelgvel 82
                  +l+gk   + G+G+ IG +vak l++ g++v + d + + ++ ++  g++ 
    KOO21475.1  4 DLTGKSAVVTGAGSgIGLEVAKALSKAGAQVHILDLTLDISQ-KAVDGINA 53
                  799**********76********************9987555.44445444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (260 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       616  (0.0343577); expected 358.6 (0.02)
Passed bias filter:                      501  (0.0279436); expected 358.6 (0.02)
Passed Vit filter:                        54  (0.00301188); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.47u 0.28s 00:00:00.75 Elapsed: 00:00:00.43
# Mc/sec: 1799.24
//
Query:       KOO21476.1  [L=610]
Description: hypothetical protein Ctob_002424 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.5e-12   47.9   0.2      2e-09   37.6   0.0    2.8  2  TauD      Taurine catabolism dioxygenase TauD, TfdA family
  ------ inclusion threshold ------
        5.3    5.4   5.4        7.6    4.9   5.4    1.1  1  Rrn6      RNA polymerase I-specific transcription-initiation 


Domain annotation for each model (and alignments):
>> TauD  Taurine catabolism dioxygenase TauD, TfdA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.0   0.1   0.00049       4.4       5     122 ..      35     229 ..      33     232 .. 0.64
   2 !   37.6   0.0   2.3e-13     2e-09     203     266 ..     526     599 ..     481     601 .. 0.76

  Alignments for each domain:
  == domain 1  score: 7.0 bits;  conditional E-value: 0.00049
        TauD   5 ltpkfgae..gvdlsdleslddel..keelrellaeygvvvfrgfpl.....speqqlefarrfG.......................plygtpgrgtn 71 
                 l p +g +  +++ s+++ l++++    el e+l+e+ ++ +r ++      +p+q+++++  +                        p          
  KOO21476.1  35 LGPSLGVQacELSPSTVAGLSEDDprLWELGEALREHSLLRLRRVDAtepplTPQQLRDVYTKVHrachpsvplvlpkpranattatsPM--------- 124
                 555555555666666666666444446789999999999999999777777799999999999977777777654433333333333322......... PP

        TauD  72 tkygevld..vssvyesadianlayttll........................................................wHtD...lsylesp 109
                             + +e++d +  a +++                                                         +H+D   ++  + p
  KOO21476.1 125 -------AsmAAMAAEGSDQRVHASAHHSgsdprarrnlrgetfsdfpetnvlgfaedvswhglrgrleptawwekigwekigcqFHHDggfSATAPPP 216
                 .......12322222222222222222223445555555566777777777788888888888888888888888999888888889996655567888 PP

        TauD 110 pgiqlLhcleapa 122
                 p ++ ++c+eap+
  KOO21476.1 217 PAVVSMYCEEAPS 229
                 9999999999975 PP

  == domain 2  score: 37.6 bits;  conditional E-value: 2.3e-13
        TauD 203 atrieglgtpeskelldaleelledpeftyrfqwqeGdlvifdNrrvlHgrtaf...........degeeRhllr 266
                  +r+ +l+ ++s+++l+al + +++p + + + wq+Gd+v+fdN++++H+ t+             ege+R + r
  KOO21476.1 526 ERRV-PLSWADSQAFLEALLAPAARPPHLVVLAWQPGDVVLFDNLSTMHSVTPThayggakgyaaVEGERRLMAR 599
                 4455.88889******************************************66444666555544665666655 PP

>> Rrn6  RNA polymerase I-specific transcription-initiation factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.9   5.4   0.00084       7.6     752     778 ..     264     302 ..     228     321 .. 0.53

  Alignments for each domain:
  == domain 1  score: 4.9 bits;  conditional E-value: 0.00084
        Rrn6 752 q............rqrarrkrekrrrrkeklklasraea 778
                              r+r+++++++rrr++e+ + ++++e+
  KOO21476.1 264 LttaaaaaeeeasRRRREQEESRRRREQEESRRRREQEE 302
                 043322222234244444444444444444233333332 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (610 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1169  (0.0652016); expected 358.6 (0.02)
Passed bias filter:                      626  (0.0349155); expected 358.6 (0.02)
Passed Vit filter:                        76  (0.00423894); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.68u 0.28s 00:00:00.96 Elapsed: 00:00:00.44
# Mc/sec: 4188.25
//
Query:       KOO21477.1  [L=256]
Description: hypothetical protein Ctob_002425 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
     0.0073   16.3   0.0      0.013   15.5   0.0    1.3  1  PAS       PAS fold


Domain annotation for each model (and alignments):
>> PAS  PAS fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.0     7e-07     0.013       2      28 ..     104     130 ..     103     141 .. 0.89

  Alignments for each domain:
  == domain 1  score: 15.5 bits;  conditional E-value: 7e-07
                 HHHHHHHHSSSEEEEEETTSBEEEECH CS
         PAS   2 dlraileslpdpifvvDedgrilyvNa 28 
                 +++ +l+ +p+pifv+ +dg+ily+N+
  KOO21477.1 104 MYKCLLDLIPSPIFVRSADGKILYTNR 130
                 678899********************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (256 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       427  (0.0238162); expected 358.6 (0.02)
Passed bias filter:                      242  (0.0134977); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.21s 00:00:00.61 Elapsed: 00:00:00.37
# Mc/sec: 2094.98
//
Query:       KOO21478.1  [L=855]
Description: achain x-ray structure, partial [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
   6.5e-188  626.1   0.0   8.2e-188  625.8   0.0    1.1  1  Myosin_head  Myosin head (motor domain)
     0.0021   18.3   0.1      0.073   13.3   0.0    3.1  3  AAA_22       AAA domain
  ------ inclusion threshold ------
       0.04   14.3   0.0       0.16   12.3   0.0    2.0  2  AAA_19       AAA domain
      0.044   14.2   0.0       0.17   12.2   0.0    2.0  2  AAA_16       AAA ATPase domain
       0.06   13.2   0.9       0.17   11.8   0.9    1.7  1  Myosin_N     Myosin N-terminal SH3-like domain
       0.15   12.0   0.0        0.3   11.0   0.0    1.5  1  RsgA_GTPase  RsgA GTPase
       0.16   12.0   0.0       0.59   10.1   0.0    1.9  2  TsaE         Threonylcarbamoyl adenosine biosynthesis protein


Domain annotation for each model (and alignments):
>> Myosin_head  Myosin head (motor domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  625.8   0.0  3.2e-191  8.2e-188       2     677 .]      72     757 ..      71     757 .. 0.92

  Alignments for each domain:
  == domain 1  score: 625.8 bits;  conditional E-value: 3.2e-191
                  SBGCGSSS-SHHHHHHHHHHHHHTT--EEEETTEEEEE--SS--S.TSSHHHHHHHTTS-GGG..SSSSHHHHHHHHHHHHHHHTSEEEEEEESSTTS CS
  Myosin_head   2 edlveLsllneasvlenlkkRykkdliYtysglvlvavnPykklk.iysedvikaykgkkree..lpPHifaiadeayrslledkenqsilisGEsGA 96 
                   d ++L++l+ +++len + Ry++d+i t +g +lv+vnP+++++ iy+e ++ +  +kk ++    PH fa+a++ y +++++++nq+i++sGEsGA
   KOO21478.1  72 PDHCQLMFLSPPTLLENTRARYMEDKIHTLVGSILVVVNPFRRIPgIYDEAMMLQCINKKLYNagCGPHKFAMAEQSYAAMKKQRNNQCIVVSGESGA 169
                  699**************************************************99999997652268******************************* PP

                  SHHHHHHHHHHHHHHHSSSSSCTCTTHHHHHHHHHHHHHHHHHEEEESSETTEESSEEEEEEEEETTSSEEEEEEEEECE-GGGGT---.TT--SBHH CS
  Myosin_head  97 GKteatKkvlqylasvaeskekveeeeleekilqsnPilEafGnAktvrndnssRFGKfieiefdakgkiagakietYLLEksRvvkqa.keERnyHi 193
                  GKte+ +++++yl    ++++++ e++l +ki+++nPilEafGnAkt+rn+nssRFG++  ++f  +++++ga+++ +LLE+sRv   + ++ER+yH+
   KOO21478.1 170 GKTETNRQLMRYLIWRGNRDKTNAEDTLTQKIMDTNPILEAFGNAKTTRNNNSSRFGRYCLVRFGDTCDVVGAQVRVFLLERSRVTSTSkAKERAYHV 267
                  ******************999999*************************************************************9865168****** PP

                  HHHHHHCSTHHHHHHTT--TCCGSTTTTTTSSSSBTTS-HHHHHHHHHHHH.HHHT--HHHHHHHHHHHHHHHHHCTSSEEEECTTSSEEESSHHHHH CS
  Myosin_head 194 FYqllagaseeekkelkledvkdyaylsqsgeltvdgiddseefketkkal.dilglseeeqkeifrivaailhlGniefkkeakdeqavledeekle 290
                   Y+l+ag+++++k       ++++ y++ sg+++ +g +d++e+++t +al + +gls++e  +++  +a+++ lGni+f ++++ +   + +++ ++
   KOO21478.1 268 MYELVAGKTKHTKA----LPPESFYYINLSGTMDCPGRNDADEYRNTASALlSGVGLSADEADQMWAGLAGMMWLGNIDFGTADTATVNAKGADDPIR 361
                  *******9887654....479*****************************6378**************************9999887777777778** PP

                  HHHHHHTS-HHHHHHHHHSEEEEETTEEEEEE-BHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSS-S-SEEEEEEEEE-B....---SSB-HHH CS
  Myosin_head 291 kaaellgvdaeelekalvkrriktgkevvskalnveqaevardalakaiyerlFdwlverinkslekkkeekksfiGvLDiaGF....EifeknsFEq 384
                   a +llgv   ++ek l++r i+++ ev   + +v +a  ardal k +y+rlF+wlv rin++++  k + k++iG+LD++GF    E+fe+nsFEq
   KOO21478.1 362 VAEKLLGVG--DMEKLLTTRAITVNGEVTFAKHSVPNACAARDALVKIMYARLFSWLVVRINQTVDDVK-RAKHYIGLLDVYGFeygfEFFEVNSFEQ 456
                  ******996..799*****************************************************99.8999*******875111167******** PP

                  HHHHHHHHHHHHHHHHHHCHHHHHHHHHTTSSGCGS-GGGCCHHHHHHHHSSSTSHHHHHHHHHTSTTS-HHHHHHHHHHHHTTST..TEEETTS... CS
  Myosin_head 385 lcinyvnEkLqqlFnelvlklEqeeYvrEgiewkfidfgldnqaiidLiekkplGilslLdeecllpkatdetfleklvkafskha..kfeksrl... 477
                  lcin++nEkLqq+F ++v+ +E + Y+ Egi w+ i +  dn++iidL e+   Gi++lLd  c+ p+at + f++ l++a+ k++   f  +++   
   KOO21478.1 457 LCINFANEKLQQFFLSTVFENEGKAYKEEGIAWTPIAY-QDNKQIIDLCENATGGIFKLLDSACKAPNATGKAFCSGLHEAHGKKSaaVFGAPKMgka 553
                  **************************************.7******************************************5554466666655555 PP

                  ..TTTTTEEEEEETTCEEEEE-.....TTHHHHHH----HHHHHHHHTSSSHHHHHHCCSHCHB--.........CSSSECCCCCSBHHHHHHHHHHH CS
  Myosin_head 478 ..kkgeakFiikHyAgkveYev.....egfleKnkDtlnedlvellksskkkllaelfkeeekeakaeakksekkkkkkkkkkkfktvgskfkeslae 568
                    + +e++F++kH+Ag+v Y +      gfleKn+D+l +++++ l +s+k+++++l++         + k + + ++++++ + +  + kf +sl +
   KOO21478.1 554 ekRGKEDHFLVKHFAGEVIYFAgdekePGFLEKNNDSLAKEVEAHLLESNKPIVRSLYETCASP----SPKRKVAVASRRHSPRLRPSANKFVKSLRD 647
                  5588999*************763322258******************************96653....3344555566666677888999******** PP

                  HHHHHCTSEEEEEEEE-SSSS--TT---HHHHHHHHHHTTHHHHHHHHHHSSSEEEEHHHHHHHHGGGSTTSS-SS..SSSHHHHHHHHHHHTTS-GC CS
  Myosin_head 569 LmktlestnphfvRCikpnekkkakkldeslvleqlrclGvlegirirraGfpnRitfeefvqrYkllakkelkkl.lkedakkaveailkeleldke 665
                  Lm++l+s ++ fvRCik+n + k+  ++ + v++qlr++G+l+++r+ + G+p+Ri +e + +rY+ l+++    +  + +  +++eai ++  ++k+
   KOO21478.1 648 LMTELQSSQAWFVRCIKSNPQLKPLLMNGESVIDQLRMSGTLDAVRLIQGGYPTRIPYEAVHSRYAKLLSDVPGVDmKSLTPAEFCEAIAEACGVNKD 745
                  *****************************************************************999998865543567889*************** PP

                  GEEECSSEEEET CS
  Myosin_head 666 eykiGktKiFfr 677
                  ey++G+t++Ff+
   KOO21478.1 746 EYSLGTTRMFFK 757
                  ***********8 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.3   0.0   2.9e-05     0.073       4      28 ..     157     181 ..     153     227 .. 0.87
   2 ?   -3.3   0.1         4     1e+04       4      18 ..     538     552 ..     536     553 .. 0.89
   3 ?    1.0   0.0      0.19   4.9e+02      45      81 ..     722     758 ..     708     786 .. 0.78

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 2.9e-05
      AAA_22   4 tagilvvtGesGtGKTtllrrlleq 28 
                 + +++vv GesG+GKT + r+l++ 
  KOO21478.1 157 NNQCIVVSGESGAGKTETNRQLMRY 181
                 789**************99998875 PP

  == domain 2  score: -3.3 bits;  conditional E-value: 4
      AAA_22   4 tagilvvtGesGtGK 18 
                 ++++ +v+G + +GK
  KOO21478.1 538 GKKSAAVFGAPKMGK 552
                 78999*********9 PP

  == domain 3  score: 1.0 bits;  conditional E-value: 0.19
      AAA_22  45 vtlpsstsskdllrellralglelkaerlsseell.ea 81 
                 v+++s+t ++++++++++a g++++++ l + +++ ++
  KOO21478.1 722 VDMKSLT-PAEFCEAIAEACGVNKDEYSLGTTRMFfKM 758
                 5555555.**************9999555555555344 PP

>> AAA_19  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   6.2e-05      0.16       4      41 ..     151     189 ..     147     219 .. 0.83
   2 ?   -2.8   0.0       2.8   7.2e+03      48      78 ..     254     302 ..     240     357 .. 0.64

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 6.2e-05
      AAA_19   4 ave.alkekvllvtaGpGtGKTrvlkhivallvelggvk 41 
                 a++ + ++++++v +  G GKT++ ++ +++l+++g+++
  KOO21478.1 151 AMKkQRNNQCIVVSGESGAGKTETNRQLMRYLIWRGNRD 189
                 55668999*************************999775 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 2.8
      AAA_19  48 vaftgrAakelrerlaalgaeatTiHrlal...................l 78 
                 v+ t++A ++    +   +++ +T H  al                    
  KOO21478.1 254 VTSTSKAKERAYHVM-YELVAGKTKHTKALppesfyyinlsgtmdcpgrN 302
                 677788877777776.4455667777766666666665555553333331 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   6.8e-05      0.17      23      48 ..     156     182 ..     145     217 .. 0.80
   2 ?   -2.7   0.0       2.7   6.9e+03      72     107 ..     563     630 ..     555     663 .. 0.48

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 6.8e-05
      AAA_16  23 rp.elvllsGesGvGKsslvrellral 48 
                 r  +++++sGesG GK+   r+l+r+l
  KOO21478.1 156 RNnQCIVVSGESGAGKTETNRQLMRYL 182
                 22389**************99999876 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 2.7
      AAA_16  72 laqalareellrqlldeaesaeleawrekleeala.................................a 107
                 l++ +a  e++   +de+e   le   + l ++++                                  
  KOO21478.1 563 LVKHFAG-EVIYFAGDEKEPGFLEKNNDSLAKEVEahllesnkpivrslyetcaspspkrkvavasrrH 630
                 5555544.6666666665555555555555555555555555555555555555555444333322222 PP

>> Myosin_N  Myosin N-terminal SH3-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.9   6.5e-05      0.17       4      35 ..      15      51 ..      14      53 .. 0.81

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 6.5e-05
                EEETTS....TTS-EEEEEEEEES.SEEEEEETTSEE CS
    Myosin_N  4 VWVpDp....kegyvkGeIkeeeG.dkvtVetedGkt 35
                VWV+D+    ++ y k+e+++++   +vtV t +G++
  KOO21478.1 15 VWVKDKaiygTDLYGKAEVQSIDEkQQVTVVTSNGEK 51
                8888873333599*********99566*******996 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   0.00012       0.3      64     114 ..     124     173 ..     107     217 .. 0.85

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00012
                  HHHHHHHHHHHTTSEEEE--TTTHTTHHHHHHHCTTSEEEEECSTTSSHHH CS
  RsgA_GTPase  64 eleelkeelealgyevllvsaktkegleelkellkdktsvlvGqSGvGKSt 114
                   l+ ++++l ++g+ + +  +  +++++++k++ +++++v+ G+SG+GK+ 
   KOO21478.1 124 MLQCINKKLYNAGCGPHKFAMA-EQSYAAMKKQRNNQCIVVSGESGAGKTE 173
                  4667778888888888888555.78999*********************85 PP

>> TsaE  Threonylcarbamoyl adenosine biosynthesis protein TsaE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.0   0.00023      0.59      14      43 ..     152     182 ..     140     190 .. 0.75
   2 ?   -2.4   0.0       1.8   4.6e+03      27      39 ..     270     282 ..     255     285 .. 0.81

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.00023
                 HHHCH.TEEEEEEESTTSSHHHHHHHHHHHT CS
        TsaE  14 lakal.gdvilLeGdLGaGKTtlvrglakal 43 
                 ++k+  +++i+ +G+ GaGKT   r+l++ l
  KOO21478.1 152 MKKQRnNQCIVVSGESGAGKTETNRQLMRYL 182
                 222224788*****************99987 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 1.8
                 STTSSHHHHHHHH CS
        TsaE  27 dLGaGKTtlvrgl 39 
                 +L aGKT  +++l
  KOO21478.1 270 ELVAGKTKHTKAL 282
                 789****999976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (855 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1557  (0.0868425); expected 358.6 (0.02)
Passed bias filter:                      895  (0.0499191); expected 358.6 (0.02)
Passed Vit filter:                       114  (0.00635841); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.82u 0.33s 00:00:01.14 Elapsed: 00:00:00.44
# Mc/sec: 5783.37
//
Query:       KOO21479.1  [L=232]
Description: lyst-interacting protein lip5 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.5e-29  101.6   0.4      5e-29  101.2   0.4    1.2  1  Vta1      Vta1 like
    8.7e-08   31.7   0.4    1.8e-07   30.8   0.4    1.5  1  Vta1_C    Vta1 C-terminal domain
  ------ inclusion threshold ------
      0.057   13.5   0.4       0.81    9.8   0.0    2.8  3  MIT       MIT (microtubule interacting and transport) domain


Domain annotation for each model (and alignments):
>> Vta1  Vta1 like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  101.2   0.4   8.3e-33     5e-29       2     145 .]      13     152 ..      12     152 .. 0.91

  Alignments for each domain:
  == domain 1  score: 101.2 bits;  conditional E-value: 8.3e-33
        Vta1   2 iapflkrakelek.adpvvaYycrlyaveqilkkklkrkdkeakefltkLldklEqlKkelkendaiedeeaakayvenfalklfnkadkedragka.. 97 
                 i  +l+ ake +   + ++aYyc+++a+ ++++ ++ +  k+   +++ L+d++E++Kk++       + + a++ +e+ a +lf++ad++dra     
  KOO21479.1  13 IVAYLNQAKERSDaGEALIAYYCKVHALSEAMAVRS-QIPKADMGYVIGLMDQVEAEKKRV------GNLDDAQMLIEMKASELFDRADTADRATPTvp 104
                 778999999988779******************655.588999*****************9......666789*********************66534 PP

        Vta1  98 tkataktflaaatlfevlklfgeldeeikkkikyakwkaarilkalke 145
                   +tak f+aaatlfev+k fgel +++ +k+ky kw+ ++i ka ke
  KOO21479.1 105 RLQTAKDFYAAATLFEVCKEFGELPDDLSEKVKYGKWRYIEICKAAKE 152
                 667*****************************************9986 PP

>> Vta1_C  Vta1 C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.8   0.4   2.9e-11   1.8e-07       6      38 .]     188     220 ..     184     220 .. 0.91

  Alignments for each domain:
  == domain 1  score: 30.8 bits;  conditional E-value: 2.9e-11
      Vta1_C   6 eAqKhaKfAiSALqYeDvetAiknLqeALklLt 38 
                 eA  +aK A+S+Lq++ ++tA+ nLq+A++lLt
  KOO21479.1 188 EAAGLAKSAVSSLQFQNIDTAVANLQKAITLLT 220
                 666689**************************8 PP

>> MIT  MIT (microtubule interacting and transport) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.2   0.0      0.18   1.1e+03      48      62 ..       8      22 ..       6      24 .. 0.87
   2 ?   -1.3   0.0      0.39   2.3e+03      48      61 ..      81      94 ..      65      99 .. 0.72
   3 ?    9.8   0.0   0.00014      0.81       2      35 ..     187     220 ..     186     229 .. 0.92

  Alignments for each domain:
  == domain 1  score: -0.2 bits;  conditional E-value: 0.18
         MIT 48 llrekieeYleRaee 62
                 lr ki  Yl+ a+e
  KOO21479.1  8 SLRGKIVAYLNQAKE 22
                7999******99975 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 0.39
         MIT 48 llrekieeYleRae 61
                l++ k++e  +Ra+
  KOO21479.1 81 LIEMKASELFDRAD 94
                66667777777775 PP

  == domain 3  score: 9.8 bits;  conditional E-value: 0.00014
         MIT   2 dkAlelvkkAveeDnagnyeeAlelYkealelLl 35 
                  +A  l+k Av + + +n+++A+ + ++a+ lL+
  KOO21479.1 187 VEAAGLAKSAVSSLQFQNIDTAVANLQKAITLLT 220
                 57999**************************997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (232 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       454  (0.0253221); expected 358.6 (0.02)
Passed bias filter:                      392  (0.021864); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.40u 0.24s 00:00:00.64 Elapsed: 00:00:00.38
# Mc/sec: 1831.36
//
Query:       KOO21480.1  [L=111]
Description: hypothetical protein Ctob_002420 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (111 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       579  (0.032294); expected 358.6 (0.02)
Passed bias filter:                      297  (0.0165653); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.20s 00:00:00.56 Elapsed: 00:00:00.36
# Mc/sec: 936.17
//
Query:       KOO21481.1  [L=236]
Description: hypothetical protein Ctob_002421 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
        5.5    7.6   6.4        7.8    7.1   6.4    1.3  1  IHABP4_N  Intracellular hyaluronan-binding protein 4 N-termin


Domain annotation for each model (and alignments):
>> IHABP4_N  Intracellular hyaluronan-binding protein 4 N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.1   6.4   0.00044       7.8      28      90 ..      14      73 ..      10     122 .. 0.66

  Alignments for each domain:
  == domain 1  score: 7.1 bits;  conditional E-value: 0.00044
    IHABP4_N 28 reaekkkeekkkkkreekenkgkrkagpkgaksaakaaaakagkkesqkerkkpkkegeeqpe 90
                r+ae++ ++  +  + e+++++ ++a  ++a+ aa+aaaa a  ke q+   + + ++  q+ 
  KOO21481.1 14 RAAEEAAKAAAEAAAIEAAASK-ERAVAGAAAAAAGAAAAAAKAKEMQAALAAGAVSQ--QEA 73
                7788888887777666655555.88888888888888888888888886655444432..222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (236 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1748  (0.0974957); expected 358.6 (0.02)
Passed bias filter:                      409  (0.0228122); expected 358.6 (0.02)
Passed Vit filter:                        50  (0.00278878); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.29s 00:00:00.74 Elapsed: 00:00:00.41
# Mc/sec: 1709.90
//
Query:       KOO21482.1  [L=1070]
Description: hypothetical protein Ctob_002428 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
      3e-23   79.9  28.1     0.0055   16.7   0.0    9.9 11  LRR_6         Leucine Rich repeat
    7.1e-06   26.3   4.3        2.6    8.6   0.0    5.7  7  LRR_4         Leucine Rich repeats (2 copies)
  ------ inclusion threshold ------
      0.047   13.4   9.2         18    5.2   0.6    5.7  5  LRR_8         Leucine rich repeat
      0.059   13.6   0.0        8.8    6.6   0.0    2.3  2  Roc           Ras of Complex, Roc, domain of DAPkinase
       0.21   11.8   1.3         59    3.8   0.0    3.3  3  AAA_33        AAA domain
       0.31   11.1   1.7         14    5.7   0.1    3.4  2  RelB_leu_zip  RelB leucine zipper
       0.36   10.6   0.5       0.65    9.7   0.5    1.4  1  ATP_bind_1    Conserved hypothetical ATP binding protein


Domain annotation for each model (and alignments):
>> LRR_6  Leucine Rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.0       3.2   8.2e+03      11      23 ..       2      14 ..       1      15 [. 0.82
   2 !    8.9   0.2   0.00066       1.7       2      16 ..      21      35 ..      20      37 .. 0.91
   3 !   10.0   0.0   0.00029      0.75       2      24 .]      53      75 ..      52      75 .. 0.95
   4 !   13.7   0.1   1.8e-05     0.047       2      24 .]      81     103 ..      80     103 .. 0.91
   5 !   14.8   0.0   8.6e-06     0.022       2      24 .]     109     131 ..     108     131 .. 0.94
   6 !   11.2   0.1   0.00012      0.31       2      22 ..     137     157 ..     136     157 .. 0.90
   7 !   15.5   0.6   5.1e-06     0.013       2      24 .]     165     187 ..     164     187 .. 0.97
   8 ?   -0.4   0.0      0.66   1.7e+03      11      21 ..     203     213 ..     195     214 .. 0.81
   9 !   16.7   0.0   2.1e-06    0.0055       3      24 .]     222     243 ..     220     243 .. 0.92
  10 ?    1.4   0.0      0.17   4.3e+02       5      16 ..     252     263 ..     251     264 .. 0.86
  11 ?   -2.6   0.2       3.3   8.3e+03       8      13 ..     284     289 ..     284     292 .. 0.90

  Alignments for each domain:
  == domain 1  score: -2.6 bits;  conditional E-value: 3.2
       LRR_6 11 sgNdIgDeGaeaL 23
                + Nd+g eG+ a+
  KOO21482.1  2 TQNDVGIEGGVAF 14
                6699999999997 PP

  == domain 2  score: 8.9 bits;  conditional E-value: 0.00066
       LRR_6  2 nthLteLdLsgNdIg 16
                n +L++L+L++N I+
  KOO21482.1 21 NATLRSLSLRCNRIS 35
                89***********97 PP

  == domain 3  score: 10.0 bits;  conditional E-value: 0.00029
       LRR_6  2 nthLteLdLsgNdIgDeGaeaLa 24
                n +Lt Ld + N++g  G+ a+a
  KOO21482.1 53 NATLTFLDFAQNELGPLGGVAFA 75
                99******************997 PP

  == domain 4  score: 13.7 bits;  conditional E-value: 1.8e-05
       LRR_6   2 nthLteLdLsgNdIgDeGaeaLa 24 
                 n +Lt+LdL+ N++g  G  aL+
  KOO21482.1  81 NKSLTTLDLQRNELGATGSAALC 103
                 89***************988876 PP

  == domain 5  score: 14.8 bits;  conditional E-value: 8.6e-06
       LRR_6   2 nthLteLdLsgNdIgDeGaeaLa 24 
                 n +L++L+L+ N++g eGa aL+
  KOO21482.1 109 NACLRTLNLKENEMGVEGARALS 131
                 889******************96 PP

  == domain 6  score: 11.2 bits;  conditional E-value: 0.00012
       LRR_6   2 nthLteLdLsgNdIgDeGaea 22 
                 nt Lt+L+++ N++g eG+ a
  KOO21482.1 137 NTALTSLNVALNGFGSEGGAA 157
                 777***************965 PP

  == domain 7  score: 15.5 bits;  conditional E-value: 5.1e-06
       LRR_6   2 nthLteLdLsgNdIgDeGaeaLa 24 
                 nt+L +L++ +N++g eG+eaLa
  KOO21482.1 165 NTTLLSLSIDSNGLGEEGGEALA 187
                 9*********************8 PP

  == domain 8  score: -0.4 bits;  conditional E-value: 0.66
       LRR_6  11 sgNdIgDeGae 21 
                 s+N++g +Ga+
  KOO21482.1 203 SSNGFGSSGAS 213
                 99*******97 PP

  == domain 9  score: 16.7 bits;  conditional E-value: 2.1e-06
       LRR_6   3 thLteLdLsgNdIgDeGaeaLa 24 
                 + L++L L +N+I+DeG+ aL+
  KOO21482.1 222 PALRKLALEDNKIDDEGGVALC 243
                 569******************8 PP

  == domain 10  score: 1.4 bits;  conditional E-value: 0.17
       LRR_6   5 LteLdLsgNdIg 16 
                 L  L+L++N+I+
  KOO21482.1 252 LVDLNLAFNEIS 263
                 667*******97 PP

  == domain 11  score: -2.6 bits;  conditional E-value: 3.3
       LRR_6   8 LdLsgN 13 
                 LdLsgN
  KOO21482.1 284 LDLSGN 289
                 9****9 PP

>> LRR_4  Leucine Rich repeats (2 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.2   0.0      0.21   5.5e+02       3      14 ..      24      35 ..      22      43 .. 0.76
   2 !    8.6   0.0     0.001       2.6       3      33 ..      56      92 ..      54     101 .. 0.79
   3 ?    1.5   0.3      0.18   4.5e+02       3      30 ..     112     145 ..     110     151 .. 0.65
   4 !    7.3   0.0    0.0025       6.4       1      38 [.     195     236 ..     195     241 .. 0.83
   5 !    5.7   0.1    0.0085        22       1      39 [.     222     265 ..     222     273 .. 0.79
   6 ?    2.4   0.3     0.092   2.3e+02       5      33 ..     254     289 ..     250     298 .. 0.61
   7 ?    0.6   0.0      0.33   8.4e+02       6      15 ..     284     293 ..     282     305 .. 0.83

  Alignments for each domain:
  == domain 1  score: 1.2 bits;  conditional E-value: 0.21
                --EEE--SS--- CS
       LRR_4  3 LevLdLsnNqlt 14
                L++L+L+ N+++
  KOO21482.1 24 LRSLSLRCNRIS 35
                788888888887 PP

  == domain 2  score: 8.6 bits;  conditional E-value: 0.001
                --EEE--SS---E-S-..HH....H-TT--EEE-.-S CS
       LRR_4  3 LevLdLsnNqltdipl..le....klpnLkeLdLsgN 33
                L++Ld+++N l  +++  ++     +++L++LdL +N
  KOO21482.1 56 LTFLDFAQNELGPLGGvaFAkaieRNKSLTTLDLQRN 92
                999****9998888887733566359********888 PP

  == domain 3  score: 1.5 bits;  conditional E-value: 0.18
                 --EEE--SS---E-S-..HH...H.-TT--EEE- CS
       LRR_4   3 LevLdLsnNqltdipl..le...k.lpnLkeLdL 30 
                 L++L+L  N +   +   l+     ++ L++L++
  KOO21482.1 112 LRTLNLKENEMGVEGAraLSsalAlNTALTSLNV 145
                 8999999888765444442244533788888886 PP

  == domain 4  score: 7.3 bits;  conditional E-value: 0.0025
                 SS--EEE--SS---E-S-.HH....H-TT--EEE-.-S----- CS
       LRR_4   1 pnLevLdLsnNqltdipl.le....klpnLkeLdLsgNnlitd 38 
                 p L++L+ s+N   + +  l+     +p L++L L +N +i+d
  KOO21482.1 195 PALTFLSASSNGFGSSGAsLGravhACPALRKLALEDN-KIDD 236
                 679***********977786678855*********777.7765 PP

  == domain 5  score: 5.7 bits;  conditional E-value: 0.0085
                 SS--EEE--SS---E-S-......HHH-TT--EEE-.-S-----G CS
       LRR_4   1 pnLevLdLsnNqltdipl......leklpnLkeLdLsgNnlitdl 39 
                 p L++L L +N++ d ++      ++    L  L+L +N  i+ l
  KOO21482.1 222 PALRKLALEDNKIDDEGGvalcdaFAAQAELVDLNLAFN-EISAL 265
                 679************999776554446888******777.54444 PP

  == domain 6  score: 2.4 bits;  conditional E-value: 0.092
                 EEE--SS---E-S-...HH...H-TT--E.EE-.-S CS
       LRR_4   5 vLdLsnNqltdipl...le...klpnLke.LdLsgN 33 
                  L+L+ N ++ +p    l+   k+ + +  LdLsgN
  KOO21482.1 254 DLNLAFNEISALPIecqLRlaqKMSSPTAlLDLSGN 289
                 577777777777776552244346666666666666 PP

  == domain 7  score: 0.6 bits;  conditional E-value: 0.33
                 EE--SS---E CS
       LRR_4   6 LdLsnNqltd 15 
                 LdLs+N+l++
  KOO21482.1 284 LDLSGNMLSS 293
                 8999999997 PP

>> LRR_8  Leucine rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.1   1.5    0.0076        20       3      61 .]      24      94 ..      22      94 .. 0.52
   2 ?    5.2   0.6    0.0071        18      22      37 ..      79      94 ..      54     122 .. 0.65
   3 ?    4.2   0.7     0.014        37       2      37 ..      83     122 ..      82     148 .. 0.71
   4 ?    2.1   0.0     0.065   1.7e+02      44      61 .]     217     234 ..     213     234 .. 0.77
   5 ?    3.5   0.2     0.023        59       2      40 ..     223     265 ..     222     291 .. 0.72

  Alignments for each domain:
  == domain 1  score: 5.1 bits;  conditional E-value: 0.0076
                -SEEE-TTS-.-SEE-TT...SSTT....-TT--EEE--SS---GGGGGGGT....T--S-.EEE--SS-- CS
       LRR_8  3 LtsLdLsnNr.ltsldde...aFkg....lsnLkvLdLsnNllttlspgafs....gLpsLrsLdLsgNrL 61
                L+sL+L++Nr  t+l+ e   aF +    +  L+ Ld  +N+l  l   af+      +sL+ LdL++N L
  KOO21482.1 24 LRSLSLRCNRiSTGLSTEratAFADalevNATLTFLDFAQNELGPLGGVAFAkaieRNKSLTTLDLQRNEL 94
                66777777773344432211133322111456677777777777776666542111568888888888865 PP

  == domain 2  score: 5.2 bits;  conditional E-value: 0.0071
                TT-TT--EEE--SS-- CS
       LRR_8 22 kglsnLkvLdLsnNll 37
                +++++L++LdL +N+l
  KOO21482.1 79 ERNKSLTTLDLQRNEL 94
                4455555555555555 PP

  == domain 3  score: 4.2 bits;  conditional E-value: 0.014
                 T-SEEE-TTS--SEE-TTSS....TT-TT--EEE--SS-- CS
       LRR_8   2 nLtsLdLsnNrltslddeaF....kglsnLkvLdLsnNll 37 
                 +Lt+LdL++N l + +  a      ++  L++L+L++N++
  KOO21482.1  83 SLTTLDLQRNELGATGSAALctavGRNACLRTLNLKENEM 122
                 6888888888888777754322214467788888888765 PP

  == domain 4  score: 2.1 bits;  conditional E-value: 0.065
                 GGTT--S-.EEE--SS-- CS
       LRR_8  44 afsgLpsLrsLdLsgNrL 61 
                 a + +p+Lr+L L++N++
  KOO21482.1 217 AVHACPALRKLALEDNKI 234
                 667788999999999886 PP

  == domain 5  score: 3.5 bits;  conditional E-value: 0.023
                 T-SEEE-TTS--SEE-T....TSSTT-TT--EEE--SS---GG CS
       LRR_8   2 nLtsLdLsnNrltsldd....eaFkglsnLkvLdLsnNllttl 40 
                  L++L L +N++ + +     +aF     L  L+L  N+++ l
  KOO21482.1 223 ALRKLALEDNKIDDEGGvalcDAFAAQAELVDLNLAFNEISAL 265
                 5777777777776544422224566678888888888888876 PP

>> Roc  Ras of Complex, Roc, domain of DAPkinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.7   0.0     0.013        33       1      19 [.     323     341 ..     323     366 .. 0.85
   2 ?    6.6   0.0    0.0034       8.8      56     113 ..     504     572 ..     473     579 .. 0.68

  Alignments for each domain:
  == domain 1  score: 4.7 bits;  conditional E-value: 0.013
                 EEEEESSTTSSHHHHHHCH CS
         Roc   1 KvvlvGdsgvGKtsllkrf 19 
                 ++++vG +gvGKt+++  +
  KOO21482.1 323 RLMVVGFGGVGKTTFCGAV 341
                 589***********98665 PP

  == domain 2  score: 6.6 bits;  conditional E-value: 0.0034
                 EEEEEEEE-SGGCTTTT-HHHHCTSCEEEEEEE.........GHHHHCHHHHHHHHHHHCSSS..-EEE CS
         Roc  56 vklniWDtaGqerfrslhplylreaalailvyd.........srssenlkeWlkelkkvagks..pvil 113
                  + ++ D+aGq ++   h+l l + + ++++++         +r++ + ++Wl+ l++ +++    ++l
  KOO21482.1 504 RECSLVDFAGQMEYLVSHQLLLASMHTLCVLIQplgsfadatNRRHGSWRYWLQFLRALGDRRgnSMVL 572
                 556778***************999888877765555554443334456799**9999987643224444 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.7   0.3     0.025        65       3      16 ..     325     338 ..     324     350 .. 0.89
   2 ?    3.8   0.0     0.023        59      75      96 ..     542     563 ..     519     596 .. 0.86
   3 ?    0.2   0.0       0.3   7.8e+02      53      80 ..     929     957 ..     906     961 .. 0.86

  Alignments for each domain:
  == domain 1  score: 3.7 bits;  conditional E-value: 0.025
      AAA_33   3 llvGlpGsGKstla 16 
                 ++vG  G+GK+t+ 
  KOO21482.1 325 MVVGFGGVGKTTFC 338
                 89**********96 PP

  == domain 2  score: 3.8 bits;  conditional E-value: 0.023
      AAA_33  75 ldatnlsrrerarflklarrlg 96 
                 +datn+++  ++ +l+++r lg
  KOO21482.1 542 ADATNRRHGSWRYWLQFLRALG 563
                 6*****************9887 PP

  == domain 3  score: 0.2 bits;  conditional E-value: 0.3
      AAA_33  53 drlyqilnelarkalsagrn.vildatnl 80 
                  ++ ++l+ l+r++l+++++ +++d t+l
  KOO21482.1 929 ASALRWLAHLVRQMLARAYSqIVFDETWL 957
                 568899*********999987888*9987 PP

>> RelB_leu_zip  RelB leucine zipper
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.7   0.1    0.0056        14      13      56 ..      89     132 ..      79     138 .. 0.81
   2 ?    2.4   0.2     0.061   1.6e+02      10      64 ..     142     199 ..     135     207 .. 0.72

  Alignments for each domain:
  == domain 1  score: 5.7 bits;  conditional E-value: 0.0056
  RelB_leu_zip  13 pelgalGsadLsslsLavsRtteiideYikengfgLeGaqaglg 56 
                    ++  lG++  ++l  av R + +    +ken  g+eGa+a+++
    KOO21482.1  89 LQRNELGATGSAALCTAVGRNACLRTLNLKENEMGVEGARALSS 132
                   5666778888888899****99888888***********99875 PP

  == domain 2  score: 2.4 bits;  conditional E-value: 0.061
  RelB_leu_zip  10 sakpelgalGsadLsslsLavsRtteiideYikengfgLeGaqagl...geglPrLvs 64 
                   s++  l  +Gs   ++ + a+   t ++   i+ ng g eG++a++   +++ P L +
    KOO21482.1 142 SLNVALNGFGSEGGAAWAAALVLNTTLLSLSIDSNGLGEEGGEALAtalVHKHPALTF 199
                   666667777777777788888888999999999******9999865111455566655 PP

>> ATP_bind_1  Conserved hypothetical ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   0.5   0.00026      0.65       1      23 [.     326     348 ..     326     354 .. 0.85

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 0.00026
  ATP_bind_1   1 vvGpaGsGKttfvgalseilelr 23 
                 vvG  G+GKttf+ga++   ++r
  KOO21482.1 326 VVGFGGVGKTTFCGAVTCPSDER 348
                 89*************98766665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1070 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       562  (0.0313459); expected 358.6 (0.02)
Passed bias filter:                      445  (0.0248201); expected 358.6 (0.02)
Passed Vit filter:                        61  (0.00340231); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.77u 0.26s 00:00:01.03 Elapsed: 00:00:00.44
# Mc/sec: 7333.61
//
Query:       KOO21483.1  [L=353]
Description: palmitoyltransferase zdhhc9 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.1e-34  119.5  13.5    1.1e-34  119.5  13.5    2.1  2  DHHC      DHHC palmitoyltransferase


Domain annotation for each model (and alignments):
>> DHHC  DHHC palmitoyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.8   1.4     0.028     5e+02      93     122 ..      48      79 ..      27      89 .. 0.65
   2 !  119.5  13.5   5.9e-39   1.1e-34       3     132 ..     117     248 ..     115     250 .. 0.86

  Alignments for each domain:
  == domain 1  score: 0.8 bits;  conditional E-value: 0.028
        DHHC  93 k..llsilllvlsllfllllgllllfhlylil 122
                 +  +++++++ l + ++++ ++l+l+ +  ++
  KOO21483.1  48 CvtFWVFVCTSLPVPAFVVGAVLFLMTMGFLV 79 
                 14467777777777777777777777655443 PP

  == domain 2  score: 119.5 bits;  conditional E-value: 5.9e-39
        DHHC   3 kelkfCstcniykpprskHcrvCnrcvlrfDHhCpwlnnciGerNykyFllfllylllllilalvlllialvklveeekkseflavtllkk..llsill 99 
                  +lk+C+tc+i++ppr+ Hc++Cn cv rfDHhCpw+++ciG+rNy++Fl f+ +++ll+ ++l l+++++++  + +  ++   ++   +     + +
  KOO21483.1 117 IQLKWCRTCHIFRPPRAAHCSECNVCVERFDHHCPWMGQCIGRRNYRFFLGFVNSCCLLCSYTLGLTCVFIYRVATMDGVKHGDFFSHAMAraPAGVAI 215
                 689***********************************************************9998887777665555554444333333355888999 PP

        DHHC 100 lvlsllfllllgllllfhlylilrnlTtieamk 132
                 +++++l+ll +g l ++h  l++ n+Tt e++k
  KOO21483.1 216 VAFCALILLCVGPLACYHYSLVCSNKTTSEEIK 248
                 999***************************998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (353 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       785  (0.0437838); expected 358.6 (0.02)
Passed bias filter:                      313  (0.0174578); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.26s 00:00:00.73 Elapsed: 00:00:00.42
# Mc/sec: 2552.09
//
Query:       KOO21484.1  [L=700]
Description: hypothetical protein Ctob_001958 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    8.9e-31  103.3  20.7     0.0002   21.1   0.1    9.7 10  LRR_6            Leucine Rich repeat
    4.6e-06   26.9   0.0       0.66   10.5   0.0    4.1  3  LRR_4            Leucine Rich repeats (2 copies)
     0.0017   18.1   7.0        1.7    8.4   0.3    4.8  4  LRR_8            Leucine rich repeat
  ------ inclusion threshold ------
      0.029   14.5   5.6       0.97    9.6   0.8    3.2  2  Fib_alpha        Fibrinogen alpha/beta chain family
       0.15   12.5   5.2          2    8.9   2.6    3.8  2  Snapin_Pallidin  Snapin/Pallidin
       0.24   11.0  12.9        1.1    8.9  12.9    2.2  1  DUF4795          Domain of unknown function (DUF4795)
          1    9.7  12.0       0.77   10.1   1.0    4.3  5  KxDL             Uncharacterized conserved protein
        1.4    8.2  10.8       0.33   10.3   5.2    2.3  2  DUF4618          Domain of unknown function (DUF4618)
          7    5.6  18.7         11    5.0  11.5    2.5  2  Atg14            Vacuolar sorting 38 and autophagy-related su


Domain annotation for each model (and alignments):
>> LRR_6  Leucine Rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.2   0.1   7.6e-05      0.15       5      22 ..      86     103 ..      85     105 .. 0.90
   2 !   15.7   0.0   5.5e-06     0.011       4      24 .]     112     132 ..     112     132 .. 0.94
   3 !   16.0   0.1   4.6e-06    0.0091       2      24 .]     138     160 ..     137     160 .. 0.92
   4 !   14.1   0.0   1.9e-05     0.037       5      23 ..     169     187 ..     169     188 .. 0.93
   5 !   18.2   0.0   9.1e-07    0.0018       1      24 []     193     216 ..     193     216 .. 0.96
   6 !   21.1   0.1     1e-07    0.0002       2      24 .]     222     244 ..     221     244 .. 0.96
   7 !    9.0   0.1   0.00081       1.6       5      24 .]     253     272 ..     252     272 .. 0.94
   8 ?    3.5   0.0     0.045        90       1      24 []     277     300 ..     277     300 .. 0.91
   9 ?   -2.9   0.1       5.1     1e+04       2       9 ..     306     313 ..     305     314 .. 0.82
  10 ?   -1.2   0.0       1.4   2.8e+03       1      10 [.     333     342 ..     333     343 .. 0.86

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 7.6e-05
       LRR_6   5 LteLdLsgNdIgDeGaea 22 
                 L  L+++++++gDeGa a
  KOO21484.1  86 LMRLSIADCGLGDEGALA 103
                 889*************98 PP

  == domain 2  score: 15.7 bits;  conditional E-value: 5.5e-06
       LRR_6   4 hLteLdLsgNdIgDeGaeaLa 24 
                 +L +L+L++N Ig+ Ga++La
  KOO21484.1 112 SLSTLELRSNRIGNPGASSLA 132
                 5889***************98 PP

  == domain 3  score: 16.0 bits;  conditional E-value: 4.6e-06
       LRR_6   2 nthLteLdLsgNdIgDeGaeaLa 24 
                 n+ L++ dL+ NdI D+Ga+ La
  KOO21484.1 138 NSALRSIDLQRNDIKDQGAIGLA 160
                 777****************9997 PP

  == domain 4  score: 14.1 bits;  conditional E-value: 1.9e-05
       LRR_6   5 LteLdLsgNdIgDeGaeaL 23 
                 L+ ++L++N++gD+Ga+aL
  KOO21484.1 169 LQVVNLRFNEVGDAGATAL 187
                 7899**************9 PP

  == domain 5  score: 18.2 bits;  conditional E-value: 9.1e-07
       LRR_6   1 snthLteLdLsgNdIgDeGaeaLa 24 
                 sn+++ eL+L gN Ig eGa+ La
  KOO21484.1 193 SNRSIVELHLGGNLIGPEGAMQLA 216
                 699*******************98 PP

  == domain 6  score: 21.1 bits;  conditional E-value: 1e-07
       LRR_6   2 nthLteLdLsgNdIgDeGaeaLa 24 
                 n++L++L+L++N I D+Ga a+a
  KOO21484.1 222 NSTLRTLNLRSNAILDVGAVAIA 244
                 9********************98 PP

  == domain 7  score: 9.0 bits;  conditional E-value: 0.00081
       LRR_6   5 LteLdLsgNdIgDeGaeaLa 24 
                 L eL L +N+Ig eG+ aLa
  KOO21484.1 253 LVELYLGSNGIGEEGCAALA 272
                 779***************98 PP

  == domain 8  score: 3.5 bits;  conditional E-value: 0.045
       LRR_6   1 snthLteLdLsgNdIgDeGaeaLa 24 
                 +n+ L+ +dL+g   g  Ga a a
  KOO21484.1 277 HNSRLQRVDLQGASCGRTGALAVA 300
                 8***********999999999876 PP

  == domain 9  score: -2.9 bits;  conditional E-value: 5.1
       LRR_6   2 nthLteLd 9  
                 n++L+ L 
  KOO21484.1 306 NRTLKQLV 313
                 9****996 PP

  == domain 10  score: -1.2 bits;  conditional E-value: 1.4
       LRR_6   1 snthLteLdL 10 
                 snt++teL L
  KOO21484.1 333 SNTTITELAL 342
                 69******87 PP

>> LRR_4  Leucine Rich repeats (2 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.3   0.0    0.0033       6.6       3      39 ..     113     151 ..     112     161 .. 0.77
   2 ?    3.8   0.0     0.041        82       3      36 ..     169     207 ..     168     210 .. 0.79
   3 !   10.5   0.0   0.00033      0.66       3      36 ..     225     263 ..     223     268 .. 0.80

  Alignments for each domain:
  == domain 1  score: 7.3 bits;  conditional E-value: 0.0033
                 --EEE--SS---E-S-...HH....H-TT--EEE-.-S-----G CS
       LRR_4   3 LevLdLsnNqltdipl...le....klpnLkeLdLsgNnlitdl 39 
                 L +L L++N++   p+   l+    ++  L+++dL +N    d+
  KOO21484.1 113 LSTLELRSNRIGN-PGassLAealaGNSALRSIDLQRN----DI 151
                 7799999999995.555772255548999******999....77 PP

  == domain 2  score: 3.8 bits;  conditional E-value: 0.041
                 --EEE--SS---E-S-......HHH-TT--EEE-.-S--- CS
       LRR_4   3 LevLdLsnNqltdipl......leklpnLkeLdLsgNnli 36 
                 L+v++L+ N + d +       l+++ +  eL+L gN li
  KOO21484.1 169 LQVVNLRFNEVGDAGAtalgkaLQSNRSIVELHLGGN-LI 207
                 999****99***9999885444446888999*99777.76 PP

  == domain 3  score: 10.5 bits;  conditional E-value: 0.00033
                 --EEE--SS---E-S-..HH...H.-TT--EEE-.-S--- CS
       LRR_4   3 LevLdLsnNqltdipl..le...k.lpnLkeLdLsgNnli 36 
                 L++L+L++N + d++   ++   k ++ L eL+L +N  i
  KOO21484.1 225 LRTLNLRSNAILDVGAvaIArmcKrNDALVELYLGSN-GI 263
                 9***************663367766888******555.55 PP

>> LRR_8  Leucine rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.0       1.8   3.7e+03       2      31 ..      62      90 ..      61      93 .. 0.65
   2 !    8.4   0.3   0.00087       1.7      26      61 .]     112     151 ..     110     151 .. 0.74
   3 ?    0.6   0.0      0.24   4.7e+02      43      61 .]     189     207 ..     167     207 .. 0.71
   4 !    8.0   0.1    0.0012       2.5      25      59 ..     223     261 ..     217     263 .. 0.52

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 1.8
                T-SEEE-TTS--SEE-TTSSTT-TT--EEE CS
       LRR_8  2 nLtsLdLsnNrltslddeaFkglsnLkvLd 31
                +Lt+L+Ls   l +l ++  +g  +L+ L+
  KOO21484.1 62 ELTELQLSPRALGELVQSLASG-GSLMRLS 90
                6788888777777777776665.5566555 PP

  == domain 2  score: 8.4 bits;  conditional E-value: 0.00087
                 T--EEE--SS--.....-GGGGGGGTT--S-.EEE--SS-- CS
       LRR_8  26 nLkvLdLsnNll.....ttlspgafsgLpsLrsLdLsgNrL 61 
                 +L +L+L++N++     ++l ++a++g ++Lrs+dL++N++
  KOO21484.1 112 SLSTLELRSNRIgnpgaSSL-AEALAGNSALRSIDLQRNDI 151
                 57777777777744444456.68999999999999999987 PP

  == domain 3  score: 0.6 bits;  conditional E-value: 0.24
                 GGGTT--S-.EEE--SS-- CS
       LRR_8  43 gafsgLpsLrsLdLsgNrL 61 
                 +a+++ +s+ +L+L gN +
  KOO21484.1 189 KALQSNRSIVELHLGGNLI 207
                 5666777777777777765 PP

  == domain 4  score: 8.0 bits;  conditional E-value: 0.0012
                 TT--EEE--SS---GGGGGGGTT-....-S-.EEE--SS CS
       LRR_8  25 snLkvLdLsnNllttlspgafsgL....psLrsLdLsgN 59 
                 s L++L+L++N +  + + a++ +     +L +L+L +N
  KOO21484.1 223 STLRTLNLRSNAILDVGAVAIARMckrnDALVELYLGSN 261
                 556666666666666655554443222244555555555 PP

>> Fib_alpha  Fibrinogen alpha/beta chain family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   0.8   0.00049      0.97      75     130 ..     352     407 ..     300     412 .. 0.76
   2 ?    5.9   0.0    0.0068        14      84     115 ..     665     697 ..     608     699 .. 0.84

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 0.00049
                 HHHHHHHHHHHHHHCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
   Fib_alpha  75 ndnvikksskeleeeilrlketidaqesnirvLqnvlesneqkiqkLeqdidqker 130
                    +++ +++++e+  + ++ +++a+e ++  L + l++ ++k ++Le++++++ +
  KOO21484.1 352 AGAALTGVNTRMEQLAAAMEVRLQAHEAQLMRLHSDLHTEREKTKNLETHVAELLQ 407
                 36778889999**99************************************99876 PP

  == domain 2  score: 5.9 bits;  conditional E-value: 0.0068
                 HHHHHCCCHHHHHHHCCH.HHHHHHHHHHHHHH CS
   Fib_alpha  84 keleeeilrlketidaqe.snirvLqnvlesne 115
                   l+++i++l+  + ++  s++r+Lq ++es++
  KOO21484.1 665 AALDHRISQLEIALHEEQqSTLRALQAIVESQQ 697
                 67999********9988879**********997 PP

>> Snapin_Pallidin  Snapin/Pallidin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.9   2.6     0.001         2      14      46 ..     394     426 ..     388     469 .. 0.84
   2 ?    1.4   0.2      0.23   4.5e+02      33      59 ..     456     481 ..     430     501 .. 0.68

  Alignments for each domain:
  == domain 1  score: 8.9 bits;  conditional E-value: 0.001
  Snapin_Pallidin  14 kldeldeklkelrqsQeeLleqldrlnekLkel 46 
                      k ++l+++++el qsQ++ +++l+rln +L e 
       KOO21484.1 394 KTKNLETHVAELLQSQDKARHELSRLNGELLEK 426
                      56889************************9543 PP

  == domain 2  score: 1.4 bits;  conditional E-value: 0.23
  Snapin_Pallidin  33 leqldrlnekLkeleeaqeaevlpdlk 59 
                      ++ +d l+++L++l+eaq+ + ++d++
       KOO21484.1 456 RAAVDGLHSQLTKLAEAQS-SHMADTD 481
                      5677888888888888888.5555555 PP

>> DUF4795  Domain of unknown function (DUF4795)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.9  12.9   0.00053       1.1       6     170 ..     392     617 ..     354     640 .. 0.85

  Alignments for each domain:
  == domain 1  score: 8.9 bits;  conditional E-value: 0.00053
     DUF4795   6 aellkklqeaieklqeelekleekvkelekrledkekklealkkqieelekvkadkeeveeelaeka.d..keaLatkvsrdq................ 85 
                 +e  k+l+ ++ +l ++++k   + ++l+++l +k ++le l+++++  +++ a+    ee+++ +a d   ++L + ++ +                 
  KOO21484.1 392 REKTKNLETHVAELLQSQDKARHELSRLNGELLEKGRDLEQLRQELRWVDEAAAKARAHEEAERRAAvDglHSQLTKLAEAQSshmadtdaaargaaes 490
                 45589999***********************************************9999999977663333466666665555889************* PP

     DUF4795  86 fDeakkeLekmleellekleeqeealkkaldtLq.....................................eelkekld.....rlelepLkeqleerl 142
                 ++++ +e+++ + e   +l ++e+a + a ++L+                                     e + ++ +        le ++e+  + l
  KOO21484.1 491 LEAVRDEMKRSFGESAARLGSVERAGQHATEQLRaafaeaqaarevevvelteaqaataqklsdelrwvdeEHMRCRAEddqkvSAALEAVREETRGAL 589
                 ************888888888888888888888877777777777777777777777777777777799999999999999988889999999999999 PP

     DUF4795 143 kelqkelqeamekedkedeaaglrkkLl 170
                 +el+ ++ ea+ ++ +  +   l++ Ll
  KOO21484.1 590 EELRAQVSEAIVPLGEPGALSTLQQALL 617
                 9999999999988887666666666665 PP

>> KxDL  Uncharacterized conserved protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.0   1.1    0.0071        14      32      79 ..     356     403 ..     353     404 .. 0.91
   2 ?   10.1   1.0   0.00039      0.77      25      69 ..     398     442 ..     396     450 .. 0.91
   3 ?   -2.2   0.0       2.7   5.4e+03      31      45 ..     490     504 ..     464     530 .. 0.56
   4 ?   -1.2   0.1       1.3   2.5e+03       8      28 ..     535     555 ..     530     598 .. 0.62
   5 ?   -2.1   0.0       2.5     5e+03      30      54 ..     636     660 ..     633     665 .. 0.80

  Alignments for each domain:
  == domain 1  score: 6.0 bits;  conditional E-value: 0.0071
        KxDL  32 LlelnalsqerlaklrarfkqgtkllkevkkdLesifkkirslkakla 79 
                 L+ +n+ +++  a ++ r++ +   l+++ +dL + ++k+++l++++a
  KOO21484.1 356 LTGVNTRMEQLAAAMEVRLQAHEAQLMRLHSDLHTEREKTKNLETHVA 403
                 77788899999999*****************************99886 PP

  == domain 2  score: 10.1 bits;  conditional E-value: 0.00039
        KxDL  25 lnkknreLlelnalsqerlaklrarfkqgtkllkevkkdLesifk 69 
                 l+   +eLl+ ++++ ++l++l+ ++ ++ ++l +++++L+++ +
  KOO21484.1 398 LETHVAELLQSQDKARHELSRLNGELLEKGRDLEQLRQELRWVDE 442
                 677789************************************975 PP

  == domain 3  score: -2.2 bits;  conditional E-value: 2.7
        KxDL  31 eLlelnalsqerlak 45 
                  L+++++++++ + +
  KOO21484.1 490 SLEAVRDEMKRSFGE 504
                 333334444444433 PP

  == domain 4  score: -1.2 bits;  conditional E-value: 1.3
        KxDL   8 sedldeilalQaqtsgrlnkk 28 
                 ++++ e   +Qa t ++l ++
  KOO21484.1 535 EVEVVELTEAQAATAQKLSDE 555
                 555666666666666666554 PP

  == domain 5  score: -2.1 bits;  conditional E-value: 2.5
        KxDL  30 reLlelnalsqerlaklrarfkqgt 54 
                  +++e+   +++rla+l+ r+  g 
  KOO21484.1 636 LKIKEVASAAEARLAELEGRLTGGG 660
                 5678899999******999987765 PP

>> DUF4618  Domain of unknown function (DUF4618)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.1      0.51     1e+03      24     105 ..     311     389 ..     304     393 .. 0.52
   2 ?   10.3   5.2   0.00017      0.33      57     170 ..     390     507 ..     365     523 .. 0.87

  Alignments for each domain:
  == domain 1  score: -1.1 bits;  conditional E-value: 0.51
     DUF4618  24 eLvkeIqdtedstakkvrklLqqyeklktvisileksskkqleqakaeLqeweekeekklekLeqqleqlnakvqklqeeln 105
                 +Lv eI   +++ a  v + L+   +++++    e  ++     a a L  +++++e+  + +e  l++ +a++  l+ +l+
  KOO21484.1 311 QLVLEIEPNNREGATAVANALRSNTTITELA-LGEAVHEA--RLAGAALTGVNTRMEQLAAAMEVRLQAHEAQLMRLHSDLH 389
                 4555555555555555555555444443332.22223333..3344556666666666666677777777776666666666 PP

  == domain 2  score: 10.3 bits;  conditional E-value: 0.00017
     DUF4618  57 leksskkqleqakaeLqeweekeekklekLeqqleqlnakvqklqeelnvLst....YkDkeYpvkavqIanlvrqlqqlkdsqqdeldeleelikevl 151
                 +e+++ k+le+  aeL + ++k  ++l++L+ +l +  + +++l++el  ++      + +e   +   +  l +ql +l++ q   + +++  ++   
  KOO21484.1 390 TEREKTKNLETHVAELLQSQDKARHELSRLNGELLEKGRDLEQLRQELRWVDEaaakARAHEEAERRAAVDGLHSQLTKLAEAQSSHMADTDAAARGAA 488
                 57788999*****************************************9976111146789999********************************** PP

     DUF4618 152 eklskkiqkkkekllksla 170
                 e+l++  ++ k+   +s+a
  KOO21484.1 489 ESLEAVRDEMKRSFGESAA 507
                 ****999999888777665 PP

>> Atg14  Vacuolar sorting 38 and autophagy-related subunit 14
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.0  11.5    0.0055        11      38     155 ..     363     481 ..     353     514 .. 0.74
   2 ?    4.0   1.1     0.011        21     130     173 ..     606     649 ..     495     663 .. 0.72

  Alignments for each domain:
  == domain 1  score: 5.0 bits;  conditional E-value: 0.0055
       Atg14  38 keslkkkiekalegke.eaeqledkiknkkakleelksliadlrerlqelkdklsqlkkeieekkkklaklsdklkkRrsdleslqneleerrkkqiak 135
                  e+l   +e  l+ +e +  +l +++ ++++k ++l +++a+l +   + ++ ls+l+ e+ ek + l++l+++l    + +++++   e++r++ +++
  KOO21484.1 363 MEQLAAAMEVRLQAHEaQLMRLHSDLHTEREKTKNLETHVAELLQSQDKARHELSRLNGELLEKGRDLEQLRQELRWVDEAAAKARAHEEAERRAAVDG 461
                 455555555555555556678889999999999999999999999999999999999999999999999999999855666666666666677777777 PP

       Atg14 136 lqdaikrieqklsslssktl 155
                 l +++ + ++ +ss   +t 
  KOO21484.1 462 LHSQLTKLAEAQSSHMADTD 481
                 77777777766665554444 PP

  == domain 2  score: 4.0 bits;  conditional E-value: 0.011
       Atg14 130 kkqiaklqdaikrieqklsslssktlesrsslcselaklyglrr 173
                    +++lq+a+ r++  ++++ ++++ ++s +++e+a+ +++r 
  KOO21484.1 606 PGALSTLQQALLRVDTLGEAVAQLCAYMQSLKIKEVASAAEARL 649
                 457889999999*****************************997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (700 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1330  (0.0741815); expected 358.6 (0.02)
Passed bias filter:                      438  (0.0244297); expected 358.6 (0.02)
Passed Vit filter:                        69  (0.00384851); expected 17.9 (0.001)
Passed Fwd filter:                        23  (0.00128284); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.87u 0.32s 00:00:01.19 Elapsed: 00:00:00.47
# Mc/sec: 4464.06
//
Query:       KOO21485.1  [L=3272]
Description: ryanodine receptor tm 4-6 family protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.4e-21   75.0   1.4    2.6e-20   72.2   1.4    2.7  1  RIH_assoc      RyR and IP3R Homology associated
    1.8e-18   66.6   0.0    1.1e-16   60.7   0.0    2.4  1  Ins145_P3_rec  Inositol 1,4,5-trisphosphate/ryanodine recepto
    3.4e-10   39.6   7.7    7.5e-10   38.4   7.7    1.5  1  Ion_trans      Ion transport protein
  ------ inclusion threshold ------
       0.11   12.3   0.0        9.3    6.1   0.0    2.5  2  MIR            MIR domain


Domain annotation for each model (and alignments):
>> RIH_assoc  RyR and IP3R Homology associated
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   72.2   1.4   5.7e-24   2.6e-20       5     101 .]    2480    2574 ..    2477    2574 .. 0.96

  Alignments for each domain:
  == domain 1  score: 72.2 bits;  conditional E-value: 5.7e-24
   RIH_assoc    5 kllrklLrfLqllceghnselqnylreQkdnktsynlvseivdllenlskatelnskslelmlqvldtLtefvqgpCpeNqeaiinskfleaivkil 101 
                  +l +k+L f+    egh++e+q+y+r Q+  +t++nl+  +v+ l  l ++  l+  +++l+ q+ +tLte+vqgpCp Nq+ +i +++++++v +l
  KOO21485.1 2480 RLACKVLIFIECATEGHYTEMQEYFRAQTGMRTQVNLIIDLVNNLLVLERT--LSTLTISLTSQLYQTLTELVQGPCPGNQRFLIGTNLCDMAVRFL 2574
                  6789**********************************************9..***************************************99875 PP

>> Ins145_P3_rec  Inositol 1,4,5-trisphosphate/ryanodine receptor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.7   0.0   2.5e-20   1.1e-16       2     186 ..      19     253 ..      18     264 .. 0.82

  Alignments for each domain:
  == domain 1  score: 60.7 bits;  conditional E-value: 2.5e-20
                    XX-B-BTT-EEEEEEESSSE.EEEEES-SSS-BEEEETTC--SSS-SSTGGGC-EEEE-----SHHHHHHHH..---.-------H.......... CS
  Ins145_P3_rec   2 kssflrigdivsLsceesvn.gflstlGLvddrcvveekagdknspPkkfrdclfkicpalrysAqkellkakkake.nktslvdv.......... 85 
                    +++ lrigd + L  +   +   +s++G+v+    ++e a  +   P  + dc++ + +  +y Aq++l +  + +  ++ +  d+          
     KOO21485.1  19 STVQLRIGDTIALCVQRDGKfCVISSEGFVELGSSLRELAL-STTVPWTLLDCMWVVTQKHQYDAQRNLQRYRQKSSqQSLKQGDQkkvmsksamp 113
                    5678*********99987666779**************998.566677*******************99887443330333334444455455555 PP

                    ....HHHHHHHHHHHH................................................EBTTSEEEEEETTTTEEEEEECCCEESSSSSS CS
  Ins145_P3_rec  86 ....lkhaadiekkqn................................................vqYGsvilLlHvkSnkyltvlkrspslrdkna 129
                        +                                                           ++YG+ i+L+H+kS+ky+  +++ ++l    +
     KOO21485.1 114 lsvgD----------VaasamsvssrqarelqdaqrraqtefqaallterlsnaarneekrgmaITYGETIQLMHLKSRKYMVFNPKRRALA-MGC 198
                    55551..........055555555556778889999999***********************************************999876.79* PP

                    EEEEEESS--.GGGSEEEEESSTTS-TTSBEBSCEEEEEEESSS-S-EE.EESEBES CS
  Ins145_P3_rec 130 mrvvLdeagnvEgswfiitPayklrseGdnVvvGdkvilkpvsaerfLhvassselr 186
                      v L+++g  + +w+++ P y  + eG  V   d++ l++v  +  Lh  + se +
     KOO21485.1 199 YSVRLEAEGS-DDAWLTVGPCYPFQFEGGAVYNHDMLTLHSVKRQLWLHC-GASEAV 253
                    **********.9********************************999**4.454544 PP

>> Ion_trans  Ion transport protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.4   7.7   1.7e-13   7.5e-10     100     242 ..    2997    3143 ..    2976    3146 .. 0.79

  Alignments for each domain:
  == domain 1  score: 38.4 bits;  conditional E-value: 1.7e-13
                  HHGGGGGGHHHCHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCCCCSCCSTSSSTTTSSS...SSSHHHHHHHHHHHHTTS CS
   Ion_trans  100 lfrvlrllklisrleglrtlvtalirsvkdllnvlllllvvlfifaligvqlfkgklreknecaktwenpnngntn...Fdnfftallwlfrlmtte 193 
                  +  v+ l+ ++ r++ l+ ++ +++    +l ++++l++vv++ fal+g+ +f ++++       + ++++ + t+   + + +++++++f    + 
  KOO21485.1 2997 FCFVVTLFDMVYRSPLLQKVIESVTVNSESLARTFMLVAVVVYHFALLGQLFFREDYQ----W--QFTDSEGNATSvdlCATTMECVMTTFY--LGL 3085
                  446999*******************************************666633333....1..122333444443346666666666666..566 PP

                  SHHHHHHHHHHHS.........HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
   Ion_trans  194 gwgdilyatldek.........skvaliyfvifiilgsflllNlliaviadnfqelte 242 
                   +  + +   d +           + +++ ++f+i+++++llN+++++++d+f+++++
  KOO21485.1 3086 SYSGLAQGLDDVRiewhanpqtARIRWLVDLLFFIIVIVMLLNIIFGIVIDTFAQQRD 3143
                  88888888888889999****9********************************9986 PP

>> MIR  MIR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.2   0.0     0.015        68      58      88 ..     160     190 ..     133     213 .. 0.85
   2 ?    6.1   0.0    0.0021       9.3     131     162 ..     333     364 ..     323     384 .. 0.76

  Alignments for each domain:
  == domain 1  score: 3.2 bits;  conditional E-value: 0.015
         MIR  58 kdawrgglikwgkvyRlkHlaTgryLaseee 88 
                  ++ rg +i++g+++ l Hl++ +y+  + +
  KOO21485.1 160 NEEKRGMAITYGETIQLMHLKSRKYMVFNPK 190
                 33679********************988776 PP

  == domain 2  score: 6.1 bits;  conditional E-value: 0.0021
         MIR 131 saklvprdsyvrlqHvvtgcwLhstsvklkke 162
                 +ak  + d+ vrl+H+ +g w+++ +v  k+ 
  KOO21485.1 333 TAKTLQADALVRLRHIDSGGWVSTRKVSPKAV 364
                 55666889999***********9999986654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (3272 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       988  (0.0551063); expected 358.6 (0.02)
Passed bias filter:                      640  (0.0356964); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 1.58u 0.32s 00:00:01.90 Elapsed: 00:00:00.53
# Mc/sec: 18596.02
//
Query:       KOO21486.1  [L=360]
Description: aliphatic amidase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.4e-43  148.3   0.0    3.1e-43  148.0   0.0    1.1  1  CN_hydrolase  Carbon-nitrogen hydrolase


Domain annotation for each model (and alignments):
>> CN_hydrolase  Carbon-nitrogen hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  148.0   0.0   1.7e-47   3.1e-43       9     260 ..      23     268 ..      15     269 .. 0.92

  Alignments for each domain:
  == domain 1  score: 148.0 bits;  conditional E-value: 1.7e-47
                   -....STTHHHHHHHHHHHHHHHHHHT..TESEEEEETTTTTBS.SSHHHHHHHHBHSSSHHHHHHHHHHHHHTEEEEEEEEEEEC.CTTEEEEEEE CS
  CN_hydrolase   9 q....kaadleanlqklleliaeAark..gadLivlPElfitgy.keeahfleaAeaglgetlallaalarkngiavviglierel.tngklqaynt 97 
                   +    + +d  +n++++ +l++++++   g+dLi++PE++  g   +++++++ A++++g++++++ ++++  +++ v+ l ++++  +++  +ynt
    KOO21486.1  23 MprlhTREDVMKNVEHICDLVRGTKKGlpGMDLIIFPEYSTQGImYDKDEMFATATTIPGPETDAFGEACKAAKTWGVFSLTGEQHeSHPRKNPYNT 119
                   4456656899*************9999****************999************************************99889999999**** PP

                   EEEEETTSEEEEEEE-SS--.E.ECTTSCECCGHHTSCS-SSS-EEEETTEEEEEEEGGGGGSHHHHHHHHHTT-SEEEEBH.GCCCTCHHHHHHHH CS
  CN_hydrolase  98 avlldldgklvgkyrKlhLf.p.geprpptaverelfepgdgipvfdtpvgkiGaaiCyeigfpellralalkgaeilvnlserapvpksmgppqwe 192
                    vl++++g++v+kyrK+  + p + + p++++   ++ +g        +++ki++ iC++ ++pe++r +a kgae++v+    ++  ++++++q+ 
    KOO21486.1 120 LVLINDKGEIVQKYRKILPWcPiEGWYPGDQT---YCTEGP-------KGIKISLIICDDGNYPEIWRDCAMKGAELVVR----CQGYMYPAKEQQV 202
                   ******************99777777777776...777766.......778***************************99....467789******* PP

                   HHHHHHHHHHTSEEEEEEBEEEHCETTEEEE--EEEE-TTS-EEEECCSSSTEEEEEEEEHHHHHHHH CS
  CN_hydrolase 193 llgraralengcfviaanqvggyeqlilwpvghSaiidpdGrilaglgeeeegvliaeidladvratr 260
                   +++ra+a+ n ++v+ an  g+  ++ + ++g Sai++ dGr l+++gee +g+ +a++  + +r  r
    KOO21486.1 203 IVARAMAWMNNVYVAVANASGN--DGVYTYFGRSAIVGNDGRTLGECGEECDGLQYAQLSISGIRDSR 268
                   **********************..************************************99998766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (360 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       335  (0.0186848); expected 358.6 (0.02)
Passed bias filter:                      317  (0.0176809); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.25s 00:00:00.71 Elapsed: 00:00:00.42
# Mc/sec: 2568.72
//
Query:       KOO21487.1  [L=332]
Description: hypothetical protein Ctob_001961 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    0.00016   21.3   0.0    0.00027   20.6   0.0    1.4  1  ATP-grasp_4   ATP-grasp domain
     0.0018   18.0   0.0      0.021   14.6   0.0    2.4  2  ATPgrasp_Ter  ATP-grasp in the biosynthetic pathway with Ter 
     0.0033   17.5   0.0     0.0067   16.5   0.0    1.5  1  ATP-grasp_3   ATP-grasp domain


Domain annotation for each model (and alignments):
>> ATP-grasp_4  ATP-grasp domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.6   0.0   4.5e-08   0.00027      47     156 ..      19     129 ..       4     132 .. 0.84

  Alignments for each domain:
  == domain 1  score: 20.6 bits;  conditional E-value: 4.5e-08
  ATP-grasp_4  47 eevveeesflvEeyieGeEfavdayfdeeGepvil..nilkkefaseedvsdrlyvtsakvieetlealeellkevnallglknfpvHiElrvsedgk 142
                  +e  e+  +l  e++ G+E+ vd       ++v++     k++++ ++ v   + ++  +   + l ++ +++ ++ + lg++++++H E+  + +g+
   KOO21487.1  19 PELRENYAVLCQEFLSGTEYVVDTVSRDSVHKVVAlwRYDKRDYYGSPVVYHGMRLLNVESDPTMLGPMVSYVVAALETLGIRDGAIHTEIMATPRGP 116
                  455567788999************998887877762245678888899999999999999999**********************************9 PP

  ATP-grasp_4 143 iipiEvnplrfagl 156
                  ++ +E n +  +g 
   KOO21487.1 117 VL-VECNCRLHGGE 129
                  98.8***9877775 PP

>> ATPgrasp_Ter  ATP-grasp in the biosynthetic pathway with Ter operon
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.6   0.0   3.5e-06     0.021       4      89 ..      26     128 ..      23     134 .. 0.71
   2 ?   -1.7   0.0      0.37   2.2e+03      40      68 ..     231     259 ..     211     269 .. 0.70

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 3.5e-06
  ATPgrasp_Ter   4 allvmeyLegpEySvDvlae.kgevlaavpRrKe....kgglq..........elekdeel....ielaerlaeefgl.dglvnvQvrededgpkLL 80 
                   a+l +e+L+g+Ey vD +++ + + ++a+ R+ +        +          ++e d+ +    ++++ +  e++g+ dg +   +  +  gp+L 
    KOO21487.1  26 AVLCQEFLSGTEYVVDTVSRdSVHKVVALWRYDKrdyyG---SpvvyhgmrllNVESDPTMlgpmVSYVVAALETLGIrDGAIHTEIMATPRGPVLV 119
                   57899***************8889999999986633431...2445556667788888765111145555666666664577888888888889999 PP

  ATPgrasp_Ter  81 EiNpRasGG 89 
                   E N R  GG
    KOO21487.1 120 ECNCRLHGG 128
                   999998888 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 0.37
  ATPgrasp_Ter  40 lqelekdeelielaerlaeefgldglvnv 68 
                    + +++d++++e+  +la+e+  +gl+++
    KOO21487.1 231 FNLVHEDAAVLEADYALAQELINEGLFSL 259
                   44567778888888888888888888776 PP

>> ATP-grasp_3  ATP-grasp domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.0   1.1e-06    0.0067      59     160 ..      22     127 ..       9     128 .. 0.73

  Alignments for each domain:
  == domain 1  score: 16.5 bits;  conditional E-value: 1.1e-06
                  ......EEEE---SEEEEEEEEE.SSSEEEEEEEEEEEET........TEEEEEEES----HHHHHHHHHHHHHTTST..T--.EEEEEEEEESS.SE CS
  ATP-grasp_3  59 aieevelvqefieGkplSvsllsdgekvlvlavnrqliekaeke....fvyaGnvtpietelkeevvelaeevvekle..gla.GyvGvDlvlkdeep 149
                    ++  l qef++G+++ v+++s  +  +v+a+ r             +vy G       ++   +  +++ vv++le  g++ G    +++ +  +p
   KOO21487.1  22 RENYAVLCQEFLSGTEYVVDTVSRDSVHKVVALWRYDKRD---YygspVVYHGMRLLNVESDPTMLGPMVSYVVAALEtlGIRdGAIHTEIMATPRGP 116
                  4456679****************99888888877654433...12346*****876555566666666677777777522443477778999999*** PP

                  EEEEEESS--G CS
  ATP-grasp_3 150 yviEvNPRltt 160
                  +++E N Rl +
   KOO21487.1 117 VLVECNCRLHG 127
                  ********987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (332 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       394  (0.0219756); expected 358.6 (0.02)
Passed bias filter:                      383  (0.021362); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.45u 0.22s 00:00:00.67 Elapsed: 00:00:00.38
# Mc/sec: 2610.32
//
Query:       KOO21488.1  [L=162]
Description: hypothetical protein Ctob_001962 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
  ------ inclusion threshold ------
       0.05   13.7   0.1        5.5    7.2   0.0    2.3  2  Glyc_hyd_38C_2  Glycosyl hydrolases family 38 C-terminal sub-


Domain annotation for each model (and alignments):
>> Glyc_hyd_38C_2  Glycosyl hydrolases family 38 C-terminal sub-domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.2   0.0   0.00031       5.5      17      55 ..      15      55 ..       4      66 .. 0.72
   2 ?    4.3   0.1    0.0024        43       6      32 ..      99     126 ..      96     138 .. 0.85

  Alignments for each domain:
  == domain 1  score: 7.2 bits;  conditional E-value: 0.00031
  Glyc_hyd_38C_2 17 kqrvGfvlhr...tnllqcgeeeeqaeklnvcnvlqatarce 55
                    +q   + lh    + l+  +  e++++ +++c vlq ++r  
      KOO21488.1 15 AQESSYPLHTlkgAALMH-ELPEQESKGIDICAVLQPDERAA 55
                    566666666411133444.558999***********999865 PP

  == domain 2  score: 4.3 bits;  conditional E-value: 0.0024
  Glyc_hyd_38C_2   6 vmrrltkstakkqrvGfvlhrt.nllqc 32 
                      m r+ +++a++ ++G   hr  ++ qc
      KOO21488.1  99 SMTRVVQAEARQTKIGEFAHRVvRVEQC 126
                     599******************7234466 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (162 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       664  (0.037035); expected 358.6 (0.02)
Passed bias filter:                      362  (0.0201908); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.24s 00:00:00.61 Elapsed: 00:00:00.38
# Mc/sec: 1272.30
//
Query:       KOO21489.1  [L=197]
Description: anaphase-promoting complex subunit 10-like protein, partial [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.4e-47  161.7   0.2    1.8e-47  161.4   0.2    1.1  1  ANAPC10   Anaphase-promoting complex, subunit 10 (APC10)
     0.0019   18.5   0.1     0.0032   17.7   0.1    1.3  1  PITH      PITH domain


Domain annotation for each model (and alignments):
>> ANAPC10  Anaphase-promoting complex, subunit 10 (APC10)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  161.4   0.2     2e-51   1.8e-47      50     183 ..      55     193 ..      50     195 .. 0.92

  Alignments for each domain:
  == domain 1  score: 161.4 bits;  conditional E-value: 2e-51
     ANAPC10  50 ldtyWqsdgsqPHlvniqfqkktevkavalyvdyklDeSYtPskirvraGtgfndlkevkkvdleeptGWvkislk......darekllrvfllqiavl 142
                 l    +sdg qPHl+niqf+kk +v+++++y+d+klDeSYtPski++r+G+ f+dl+e+++ +l+ep+GWv i  +      d  ++ lr++++q+avl
  KOO21489.1  55 LSHSCRSDGPQPHLINIQFHKKMRVHEIVIYTDFKLDESYTPSKISIRVGNTFHDLQEIHVQELNEPSGWVTILPTsvtsrgDDPDAALRAHFIQVAVL 153
                 566679******************************************************************97666889997799************* PP

     ANAPC10 143 snhqnGrdthvrqikiygPveeksevaarlikftsaefevr 183
                 +nhqnGrdth+rqiki +P+++  + + +l +fts+ f+++
  KOO21489.1 154 ANHQNGRDTHIRQIKISTPRRHLGQHM-NLPEFTSVAFQQY 193
                 *******************99988877.6789999999876 PP

>> PITH  PITH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.7   0.1   3.6e-07    0.0032      38     102 ..      58     119 ..      47     170 .. 0.66

  Alignments for each domain:
  == domain 1  score: 17.7 bits;  conditional E-value: 3.6e-07
        PITH  38 yleSdaDeqLlihipFtqsvklksllikstkkeeeesaPktiklfkNrkkkldFddase.ptqeie 102
                 +++Sd  +  li+i+F ++++++ ++i +  k +e+ +P++i + + +     F d++e ++qe++
  KOO21489.1  58 SCRSDGPQPHLINIQFHKKMRVHEIVIYTDFKLDESYTPSKISIRVGN----TFHDLQEiHVQELN 119
                 57788778889****************998888999********6653....35555211555433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (197 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       388  (0.0216409); expected 358.6 (0.02)
Passed bias filter:                      340  (0.0189637); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.38u 0.24s 00:00:00.62 Elapsed: 00:00:00.38
# Mc/sec: 1570.87
//
Query:       KOO21490.1  [L=585]
Description: threonine dehydratase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.8e-65  220.2   4.6    6.4e-65  219.5   4.6    1.3  1  PALP            Pyridoxal-phosphate dependent enzyme
    1.5e-28   98.4   0.0    8.2e-17   60.8   0.0    2.5  2  Thr_dehydrat_C  C-terminal regulatory domain of Threonine deh


Domain annotation for each model (and alignments):
>> PALP  Pyridoxal-phosphate dependent enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  219.5   4.6   7.2e-69   6.4e-65       4     275 ..      75     353 ..      72     366 .. 0.97

  Alignments for each domain:
  == domain 1  score: 219.5 bits;  conditional E-value: 7.2e-69
                 CSSS--EEEECCTCCCCCCEEEEEEGGGSTTSBTTHHHHHHHHHHHHTTTTTSEEEEEBSSHHHHHHHHHHHHHT-EEEEEEETTS-HHHHHHHHHTT- CS
        PALP   4 gigpTPlvrlprlskelgvplflKlEslnptgSfKdRgaeyllarlkegtgaktvveassGNhgralAaaaallGlkvtivvpadaspekvallrllGa 102
                   g+TPl  + +ls++l++ + +K+E+l p+ S+K+Rga+++la+l    ++k v++as G  g+++A aa++lG+++t+v+p+ +++ ++a++++ Ga
  KOO21490.1  75 LLGETPLQYASGLSERLNCSVHVKREDLLPSFSYKLRGAYNRLAHLPA--DKKEVITASVGSQGLSVAVAARALGVRATVVMPQRTPTKRIAAIERAGA 171
                 5799*****************************************554..489********************************************** PP

                 EEEEECCHHHHHHHHHHHHHHHSTTCEE--TTTSHHHHHHHHTHHHHHHHHTT........TTEEEEEEE-SSSHHHHHHHHHHHHHSTT-EEEEEEEC CS
        PALP 103 evvevggdydeavaaaaelaaegegaylvsqfdnptviegygtiglEileqlg........gkpdavvvpvGgGgliaGiaaglkerrpdvrvigvepe 193
                  vv+ g++  ea + +++ a+ ++ +  ++++d+p+vi g++t++lEi++q+g        +++dav+v +Gg +l+aG+aa +k+  p ++vigve++
  KOO21490.1 172 LVVVKGTTLGEAFEEVQKTASADPQVMELQPHDDPYVISGQATAALEIVKQIGaaleghehNRLDAVFVVAGGSSLLAGVAAVVKSVMPRTKVIGVEAS 270
                 *****************999999**************************************************************************** PP

                 TTCGGTTCCS..S.SS..B.SSS.CCSTCSCGTTCCHHHHSEEEEEEEEEEHHHHHHHHHHHHHHHSB-B-HHHHHHHHHH.H CS
        PALP 194 gsdalarslragrrvtvpvsdtiadglavgspselafelldrlvdeivtvsdeealeamrllarregivvepssaaalaal.k 275
                  +d l+rsl ag+ ++v ++  ++dg +v++ ++++f+l+ +lvd+iv vs +e+++a+r   ++++ v+ep++a+a+a+l k
  KOO21490.1 271 SADLLHRSLLAGHTLSVAEPAPFVDGASVRQLGPEVFRLCNELVDDIVVVSHDEICAAVRDAFEDTRAVLEPAGAVAIAGLkK 353
                 *********************************************************************************43 PP

>> Thr_dehydrat_C  C-terminal regulatory domain of Threonine dehydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.2   0.0   8.5e-13   7.6e-09       1      71 [.     390     459 ..     390     487 .. 0.86
   2 !   60.8   0.0   9.1e-21   8.2e-17       8      90 ..     500     583 ..     493     584 .. 0.94

  Alignments for each domain:
  == domain 1  score: 35.2 bits;  conditional E-value: 8.5e-13
                     HHHTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXXX.XXXXXXXXXXXXXXXXXXXXXXXX CS
  Thr_dehydrat_C   1 eraevgegleallavefpeqpGaLkkFlellggrndiTlfeYrkage.kngkvLvgvevsqaeeldelierl 71 
                     era++ge++e+l+a  +p++ G +    +++++r  +T+f Yr   + k + v +++e+s+ae  +++  ++
      KOO21490.1 390 ERAAIGEQREKLFALRMPDRTGMFFSMYKAVQPRL-VTEFVYRHSPKdKDALVYMAMETSEAEA-KKMSPEM 459
                     89*********************************.********9998************9988.6666555 PP

  == domain 2  score: 60.8 bits;  conditional E-value: 9.1e-21
                     XXXXXXXXXXXXXXXXXXXXXXXXXXXX...XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
  Thr_dehydrat_C   8 gleallavefpeqpGaLkkFlellggrnd..iTlfeYrkagekngkvLvgvevsqaeeldelierleklgykvedlsknellkeh 90 
                       e+++ +efpe++GaL +Fl++l +r+   iT ++Yr++g + gkvL+gv+v++ ++ + + e le lgy ++d+++n +++++
      KOO21490.1 500 PGERIVRFEFPENAGALNQFLGALNKRDGwfITMLHYRNHGGQVGKVLAGVRVPEGQD-KAFTEVLEGLGYPFFDETQNIIYRDF 583
                     5699**********************98888***************************.********************999987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (585 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       397  (0.0221429); expected 358.6 (0.02)
Passed bias filter:                      338  (0.0188521); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.54u 0.24s 00:00:00.78 Elapsed: 00:00:00.41
# Mc/sec: 4296.90
//
Query:       KOO21491.1  [L=52]
Description: hypothetical protein Ctob_001963, partial [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (52 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       209  (0.0116571); expected 358.6 (0.02)
Passed bias filter:                      159  (0.00886831); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.23s 00:00:00.57 Elapsed: 00:00:00.39
# Mc/sec: 400.28
//
Query:       KOO21492.1  [L=113]
Description: nucleoredoxin-like protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.4e-09   38.1   0.0    1.6e-09   37.9   0.0    1.1  1  Thioredoxin_8  Thioredoxin-like


Domain annotation for each model (and alignments):
>> Thioredoxin_8  Thioredoxin-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.9   0.0   9.1e-14   1.6e-09      23      90 ..       9      80 ..       1      86 [. 0.88

  Alignments for each domain:
  == domain 1  score: 37.9 bits;  conditional E-value: 9.1e-14
                   HHHHHHHHHH.TTSEEEEEEE-SS-HHHHHHHGGGS-TTSEE.EE-TT-...HHHHTT-S--TT-SEEEEE- CS
  Thioredoxin_8 23 lkelyeklkk.kkkveivyvsldkkeeefekylkknkkpwlsvpfddkk...rnklkkkynvkaiPtlvvld 90
                     +lyekl+  + ++e+v vs d   ++ ++y +++++pwls+p +++    +++l  +y+v++iPtlvvl 
     KOO21492.1  9 TAALYEKLRGvGGDLEVVMVSWDDLSDDRKSYARQHGMPWLSLPHSNEMrklTDELTLRYDVMGIPTLVVLE 80
                   56799***9899************99********************97435688****************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (113 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       243  (0.0135535); expected 358.6 (0.02)
Passed bias filter:                      225  (0.0125495); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.21s 00:00:00.59 Elapsed: 00:00:00.38
# Mc/sec: 881.26
//
Query:       KOO21493.1  [L=388]
Description: hypothetical protein Ctob_002077 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    9.7e-17   61.0   9.9    4.4e-09   35.9   1.1    2.2  2  Mg_trans_NIPA   Magnesium transporter NIPA
  ------ inclusion threshold ------
      0.052   14.2  14.6      0.055   14.1   1.2    3.0  2  Multi_Drug_Res  Small Multidrug Resistance protein
       0.17   12.0  31.2       0.98    9.6   1.1    3.9  4  EamA            EamA-like transporter family


Domain annotation for each model (and alignments):
>> Mg_trans_NIPA  Magnesium transporter NIPA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.7   2.1   5.4e-11   3.2e-07       4     158 ..       5     153 ..       2     164 .. 0.80
   2 !   35.9   1.1   7.4e-13   4.4e-09     171     291 ..     205     325 ..     198     329 .. 0.87

  Alignments for each domain:
  == domain 1  score: 29.7 bits;  conditional E-value: 5.4e-11
  Mg_trans_NIPA   4 liGvlLavssslfigssfilkkkgllrlarkgevrageGGyaylkevlWwaGlltmavGea.anfaayafaPatLvtPLGalsvivsavlas...l 95 
                    ++G++La+ +++  ++ ++l k++ +  a             +l+  +++ G++ ++   a  + +a+a+aP +L++P+  +++++++ las   l
     KOO21493.1   5 IVGMVLALVGCFSSAIGLVLMKHSAMTEAD----------LPFLRRRFFFMGFIFLIFNAAlIDVIAFALAPLSLLAPFSGVTIVITSWLASsgmL 90 
                    678888888888888888887766554433..........4599999*****9998876542799**************99999998888754447 PP

  Mg_trans_NIPA  96 lLkekLkllgllGcllailGstvlvihaPkeee.ieslkevadllvdpaflvyvilvvvvvlvl 158
                    +++e L l++++   ++++G ++   + P+ ee  +s +e+  ++    f v + + v  vl+l
     KOO21493.1  91 FVHESLDLYDVVSTAVTLVGVILTSSYGPHVEEgPKSPDELYGYFNRHDFHVCMSMLV-FVLAL 153
                    99***************************966528999*********99988766555.44544 PP

  == domain 2  score: 35.9 bits;  conditional E-value: 7.4e-13
  Mg_trans_NIPA 171 ilvyitlcsllgsltvisvkalgiaikltlaGkaqlkyalawilllvlvicvvlqinyLnkaldifntsivtPvyyvlfttlvivasailfkefle 266
                    +l++    +l g+++++ +k +g  i  +l+  + l ++   + l+ l  c ++q+ +L + l +  +s  +P y  l+t l+++++ i+f+ef+ 
     KOO21493.1 205 VLLLAYTAALSGAMSMLLLKVIGTGILAALEKDMPLLEPGWLLSLVALALCAMVQLGFLHRTLANSPVSFAVPTYQALLTVLTVITGGIFFQEFNV 300
                    55666677889**************************9987777888888999*****************************************98 PP

  Mg_trans_NIPA 267 asvddvlgelsGfllvllgvfllha 291
                     +  + l   +G+ + l+gv l  +
     KOO21493.1 301 LAPFEQLVFAAGVGVTLVGVALHST 325
                    8776666777888888888877655 PP

>> Multi_Drug_Res  Small Multidrug Resistance protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.9   5.0     0.007        42       5      91 ..      10     105 ..       3     108 .. 0.63
   2 ?   14.1   1.2   9.2e-06     0.055      33      80 ..     249     297 ..     205     308 .. 0.82

  Alignments for each domain:
  == domain 1  score: 4.9 bits;  conditional E-value: 0.007
                     HHHHHHHHHHHHHHH--------------HHHH.HHHHHHHHHHHHH--.-----H....HHHHHHHHHHHHHH...HHHHHH--------HHHH CS
  Multi_Drug_Res   5 llvlAillevvgailLklsegftkltpsllviv.gygisfllLskalks.lpvsvA....YavwsGiGtvlivl...vgillfgeslslkkligl 90 
                     l ++  +++ +g +l+k s+ +++  p+l   + ++g+ fl++  al   +  ++A     a +sG+ +v+++     g+l+ +esl+l  +++ 
      KOO21493.1  10 LALVGCFSSAIGLVLMKHSAMTEADLPFLRRRFfFMGFIFLIFNAALIDvIAFALAplslLAPFSGVTIVITSWlasSGMLFVHESLDLYDVVST 104
                     33444567899******988887777766554325555555555555433555555333346789999998754111578899999999998876 PP

                     H CS
  Multi_Drug_Res  91 a 91 
                     a
      KOO21493.1 105 A 105
                     5 PP

  == domain 2  score: 14.1 bits;  conditional E-value: 9.2e-06
                     -HHHH.HHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH-- CS
  Multi_Drug_Res  33 llviv.gygisfllLskalkslpvsvAYavwsGiGtvlivlvgillfge 80 
                     l++++ + ++ + +L ++l + pvs A ++++++ tvl+v++g ++f+e
      KOO21493.1 249 LVALAlCAMVQLGFLHRTLANSPVSFAVPTYQALLTVLTVITGGIFFQE 297
                     3333347788999**********************************98 PP

>> EamA  EamA-like transporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.7   9.7    0.0003       1.8       3      85 ..       7      88 ..       5      89 .. 0.88
   2 ?    9.6   1.1   0.00016      0.98     109     136 ..      88     115 ..      68     116 .. 0.81
   3 ?   -2.3   0.0      0.76   4.6e+03       5      19 ..     146     160 ..     143     171 .. 0.62
   4 ?    1.8   9.3     0.041   2.4e+02      34     115 ..     208     297 ..     198     325 .. 0.70

  Alignments for each domain:
  == domain 1  score: 8.7 bits;  conditional E-value: 0.0003
        EamA  3 gillallaalfwaiyfvlskillrkvspltltfvrfliagillliiallkegklaklslkdwllllllgllgtvlafllffya 85
                g++lal++++++ai+ vl+k+   +   l ++  rf++ g+++li+ +     +  + l ++ ll+ ++ + +v++ +l  ++
  KOO21493.1  7 GMVLALVGCFSSAIGLVLMKHSAMTEADLPFLRRRFFFMGFIFLIFNAALIDVI-AFALAPLSLLAPFSGVTIVITSWLASSG 88
                899*******************9999***********99999999987777777.7899999999999999999988887666 PP

  == domain 2  score: 9.6 bits;  conditional E-value: 0.00016
        EamA 109 svlllgekltlkqllgivlillGvllil 136
                 ++l+ +e+l l++++++++ l+Gv+l++
  KOO21493.1  88 GMLFVHESLDLYDVVSTAVTLVGVILTS 115
                 5799*********************986 PP

  == domain 3  score: -2.3 bits;  conditional E-value: 0.76
        EamA   5 llallaalfwaiyfv 19 
                 +l+++ al w++  +
  KOO21493.1 146 MLVFVLALGWGFESL 160
                 355555566665555 PP

  == domain 4  score: 1.8 bits;  conditional E-value: 0.041
        EamA  34 tfvrfliagillliiallkegkl.......aklslkdwllllllgllgtvlafllffyalkktsasnasli.tslePvftlilsvlllge 115
                 ++++  ++g++ ++++ + +  +         l   +wll l+  +l+ ++  +++   l ++++s+a++  ++l  v+t+i + ++++e
  KOO21493.1 208 LAYTAALSGAMSMLLLKVIGTGIlaalekdMPLLEPGWLLSLVALALCAMVQLGFLHRTLANSPVSFAVPTyQALLTVLTVITGGIFFQE 297
                 44444455555544444444444333332111444558888888889999999***************99779**************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (388 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       728  (0.0406046); expected 358.6 (0.02)
Passed bias filter:                      332  (0.0185175); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.49u 0.24s 00:00:00.73 Elapsed: 00:00:00.39
# Mc/sec: 2955.97
//
Query:       KOO21494.1  [L=547]
Description: potassium voltage-gated channel subfamily h member 7 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
      2e-18   66.5   7.2    3.8e-18   65.6   7.2    1.5  1  Ion_trans     Ion transport protein
  ------ inclusion threshold ------
       0.16   12.0   0.0       0.33   11.0   0.0    1.6  1  cNMP_binding  Cyclic nucleotide-binding domain


Domain annotation for each model (and alignments):
>> Ion_trans  Ion transport protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.6   7.2   4.2e-22   3.8e-18       2     242 ..      54     342 ..      53     345 .. 0.83

  Alignments for each domain:
  == domain 1  score: 65.6 bits;  conditional E-value: 4.2e-22
                 HHHHHHHHHHHHHHHHHHHCCCSSSS...............HHHHC..HHHHHHHHHHHHHHHHHHHHHHHHHTH..........HHHHHHCHSHHHHH CS
   Ion_trans   2 svfelfilllillncvflaletyfpe...............delek..tileilelvftaiftlemllkilalgl..........likkrYlrdpwnil 73 
                 s++++ +   i++ +v++++e +f+                  +++  +++++l+++++++f+++++l++++ ++          + +k+Y+    +++
  KOO21494.1  54 SSWNMAMAAAIIYCSVVVPIEIAFETdmvesmcgtgeekvkRAQCTdfQLWFWLNFAVDVWFIIDIILNFRTGFVfeglfvndawKVAKHYMLRGTFFI 152
                 78***************************9999999877764444479************************8889999******************** PP

                 HHHHHHHHHHHH.....HHHH.................HHHHHHHHHHHHGGGGGGHHHCHSHHHHHHHH.HHHHHHHHHHHHHHHHHHHHHHHHHHH. CS
   Ion_trans  74 Dflvvlpsllsl.....vlse.................esllllsvlrlfrvlrllklisrleglrtlvt.alirsvkdllnvlllllvvlfifalig. 148
                 D+l  +p  l+l        +                   l ll++ +l++++r++kl+++leg ++++    ++ +k ++  l+ ++++++++ li+ 
  KOO21494.1 153 DVLGSFPLNLVLmsvnpS--NpygdieedsggdatrmnRMLRLLRMSKLAKLARMFKLFKYLEGAEAIIDpGSLQLFKLIFISLFSCHLFGCAWWLISd 249
                 *******99988666550..155555556666677677789999999999********************88**************************6 PP

                 HHHHTTSCCCCCCSCCSTSSSTTTSSSSSS.......HHHHHHHHHHHHTTSSHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
   Ion_trans 149 vqlfkgklreknecaktwenpnngntnFdn.......fftallwlfrlmttegwgdilyatldekskvaliyfvifiilgsflllNlliaviadnfqel 240
                 ++l  g+l  +n + +t+en+ ++ +  ++       +++a++w   + t+    d++++t  e       ++ +  ++ ++++ +++i   + ++  +
  KOO21494.1 250 LELS-GDLGLEN-DWYTEENKWQPANWLRQepklhikYLHAFFWGAAMVTSMVPSDVMPVTSLEV------TLTVTAMFYGLMMNAYVISSLTAALGAM 340
                 6666.5555332.344444443333333336777777****************************......9999999999999888887777776666 PP

                 HH CS
   Ion_trans 241 te 242
                 ++
  KOO21494.1 341 NS 342
                 65 PP

>> cNMP_binding  Cyclic nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   3.7e-05      0.33       3      36 ..     436     467 ..     434     527 .. 0.85

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 3.7e-05
                   EE-TT-EEE-TTSB-SEEEEEEES-EEEEEEETT CS
  cNMP_binding   3 sfkagevifrqGdpadslyivlsGevrvyrlsed 36 
                    f +++vi+ +G+p   +y++++G v ++   ++
    KOO21494.1 436 VFVPNQVIVVEGTPLLAIYFIIKGIVMLS--RDS 467
                   5889***********9**********995..333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (547 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       446  (0.0248759); expected 358.6 (0.02)
Passed bias filter:                      296  (0.0165096); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.53u 0.23s 00:00:00.76 Elapsed: 00:00:00.41
# Mc/sec: 4027.14
//
Query:       KOO21495.1  [L=203]
Description: hypothetical protein Ctob_002078 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
      4e-08   33.4   1.0      4e-08   33.4   1.0    2.0  2  Spc24          Spc24 subunit of Ndc80
  ------ inclusion threshold ------
      0.015   15.3   0.1      0.018   15.1   0.1    1.2  1  INCA1          INCA1
      0.055   13.9   3.4      0.043   14.2   1.1    1.9  2  HsbA           Hydrophobic surface binding protein A
      0.056   14.0   7.3       0.14   12.7   6.1    2.1  2  Syntaxin-6_N   Syntaxin 6, N-terminal
      0.061   12.8  10.4        0.6    9.6   1.4    2.1  2  Leu_zip        Leucine zipper
       0.15   11.7   0.8       0.29   10.8   0.8    1.6  1  DUF359         Protein of unknown function (DUF359)
       0.31   10.4   5.9       0.39   10.1   5.9    1.1  1  Mcm10          Mcm10 replication factor
       0.37   11.2   4.3       0.71   10.2   3.4    1.8  2  Gp-FAR-1       Nematode fatty acid retinoid binding protein (
       0.97   10.1   7.0       0.45   11.2   3.3    2.0  2  YabA           Initiation control protein YabA
        1.4    9.0  11.1          4    7.5  11.1    1.7  1  UPF0242        Uncharacterised protein family (UPF0242) N-ter
        1.6    9.2  10.0          2    8.9   7.1    2.4  2  ZapB           Cell division protein ZapB
        2.2    8.3  15.0         11    6.0  15.0    2.1  1  ADIP           Afadin- and alpha -actinin-Binding
        2.8    6.7  12.6        4.9    5.9  12.6    1.3  1  Spc7           Spc7 kinetochore protein
        3.6    8.1  10.8         16    6.1  10.9    1.9  1  APG6_N         Apg6 coiled-coil region
          4    7.7  12.2        8.8    6.5  11.2    1.8  2  Jnk-SapK_ap_N  JNK_SAPK-associated protein-1
        5.4    7.7  10.7        9.5    6.9   0.2    2.2  2  BST2           Bone marrow stromal antigen 2


Domain annotation for each model (and alignments):
>> Spc24  Spc24 subunit of Ndc80
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.5   0.2      0.63     7e+02       7      32 ..      52      77 ..      24      87 .. 0.63
   2 !   33.4   1.0   3.6e-11     4e-08       4     104 ..      90     198 ..      82     199 .. 0.80

  Alignments for each domain:
  == domain 1  score: 0.5 bits;  conditional E-value: 0.63
       Spc24  7 friakelsdleselesleselaelke 32
                +++++++++l+  ++++  el++ k+
  KOO21495.1 52 LEMQQSIKELTGVTNRMLDELNDRKS 77
                34444444444444444444444444 PP

  == domain 2  score: 33.4 bits;  conditional E-value: 3.6e-11
       Spc24   4 nekfriakelsdleselesleselaelkeeleeleeesee.keserve.detllklklYrsL.Gielekd..vnkvlirnkek..gdvnvlnldd.kls 94 
                  +k r+  +++ ++++  sl+++   l ++ ++l +++++ k++e++e +++   ++lY ++  i+++++  + k  i+      g +  +++++ ++s
  KOO21495.1  90 AQKSRAEDNIRRMQEDNASLQNQVGALSNKATDLTTSEQQiKQREINEvKRAKHTISLYANIsSIKWDYSspNVKGWITAGAAstGRMRAFEMERgSHS 188
                 56677777777777777777777777777777777777777777777779999*****************99666677666665899************ PP

       Spc24  95 effianyiWd 104
                 +f + n++W+
  KOO21495.1 189 DFQVVNHLWN 198
                 *********7 PP

>> INCA1  INCA1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.1   0.1   1.6e-05     0.018      74     130 ..      86     147 ..      42     187 .. 0.81

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 1.6e-05
       INCA1  74 PevlcrrkrrrpklagmqqGpgsiparvravtyhledlrr.....rqriinelkkaqWgssg 130
                  e+l ++ r   ++ +mq+  +s+  +v a++    dl       +qr ine+k+a+  +s 
  KOO21495.1  86 RELLAQKSRAEDNIRRMQEDNASLQNQVGALSNKATDLTTseqqiKQREINEVKRAKHTISL 147
                 48999999999**************************96433333899********998875 PP

>> HsbA  Hydrophobic surface binding protein A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   1.1   3.9e-05     0.043      38     117 ..      26     112 ..       6     115 .. 0.84
   2 ?    1.5   0.2      0.34   3.8e+02      16      40 ..     107     129 ..      93     152 .. 0.59

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 3.9e-05
                 HHHHHHHHHHHHHHHHTS----HHHHHHHHHHHHHCHHHHHHHHHHHHHTHHHHH.......HHT-HHHHHHHHHHHHHHHHHHHHH CS
        HsbA  38 snalvsaikkattdaqasapltdeealalaqavqtLepdvkaaldaliaKkpafd.......kagltslvlssLqdlkaasdaLsda 117
                 s++ +++++++ +++ a ++ t + +l+++q++++L+  ++ +ld l ++k+ +         +  +s + +++++++ + ++L ++
  KOO21495.1  26 STDDQRSVRESGQAIAALDESTKARHLEMQQSIKELTGVTNRMLDELNDRKSNLLdpttkreLLAQKSRAEDNIRRMQEDNASLQNQ 112
                 55557788899999*************************************999877776643355888888888888888888776 PP

  == domain 2  score: 1.5 bits;  conditional E-value: 0.34
                 HHHHHHHHH--SH..HHHHHHHHHH CS
        HsbA  16 taldtavnafnGgasalpilsasna 40 
                  +l+++v a +++  a+ ++++ ++
  KOO21495.1 107 ASLQNQVGALSNK--ATDLTTSEQQ 129
                 3444444444332..4444444444 PP

>> Syntaxin-6_N  Syntaxin 6, N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   6.1   0.00013      0.14       9      85 ..      53     134 ..      48     146 .. 0.85
   2 ?    0.1   0.0       1.1   1.2e+03      42      58 ..     143     159 ..     136     160 .. 0.78

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 0.00013
  Syntaxin-6_N   9 eVqkslnkaeslyrrwe.rlledtsss....tseeldetrteLrkalrsiewdledLeetvriveknpskfkidekelsrrr 85 
                   e q+s+++++++ +r+  +l + +s+     t+ el  +++  + ++r +++d   L++ v++++++ ++   +e+++++r+
    KOO21495.1  53 EMQQSIKELTGVTNRMLdELNDRKSNLldptTKRELLAQKSRAEDNIRRMQEDNASLQNQVGALSNKATDLTTSEQQIKQRE 134
                   789*************6376666555156779**********************************9999*******99996 PP

  == domain 2  score: 0.1 bits;  conditional E-value: 1.1
  Syntaxin-6_N  42 trteLrkalrsiewdle 58 
                   ++  L ++++si+wd +
    KOO21495.1 143 HTISLYANISSIKWDYS 159
                   566788999*****975 PP

>> Leu_zip  Leucine zipper
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   1.4   0.00054       0.6     168     231 ..      18      81 ..       5      96 .. 0.84
   2 ?    7.7   2.9     0.002       2.2     133     176 ..      97     141 ..      87     160 .. 0.79

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 0.00054
     Leu_zip 168 kalkelqkelgekkdekenskeiskleeklaelkldlektleektasaksleedlastkhelLk 231
                 k + +l ++ +++++++e+ + i+ l+e+ ++ +l+++++ +e t  ++++ ++l + k +lL 
  KOO21495.1  18 KGIVQLFSSTDDQRSVRESGQAIAALDESTKARHLEMQQSIKELTGVTNRMLDELNDRKSNLLD 81 
                 5566666778888999999*******************************************97 PP

  == domain 2  score: 7.7 bits;  conditional E-value: 0.002
     Leu_zip 133 keierLkeenekLkerlkelEkqatsaleeksklek.alkelqke 176
                  +i r++e+n  L++++  l ++at++   ++++++ +++e++++
  KOO21495.1  97 DNIRRMQEDNASLQNQVGALSNKATDLTTSEQQIKQrEINEVKRA 141
                 5799**********************9998888875155555443 PP

>> DUF359  Protein of unknown function (DUF359)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.8   0.00026      0.29       1      63 [.      64     126 ..      64     149 .. 0.83

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00026
      DUF359   1 vtknllkagikPdlaivDgktkReeveeeekeeekekekekevievkNpaGtiteelieaike 63 
                 vt+++l+     +  ++D  tkRe + +++++e++++++++++ + +N+ G +++++ +   +
  KOO21495.1  64 VTNRMLDELNDRKSNLLDPTTKRELLAQKSRAEDNIRRMQEDNASLQNQVGALSNKATDLTTS 126
                 67777777777788899*******888877777789******************999886655 PP

>> Mcm10  Mcm10 replication factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   5.9   0.00035      0.39      22     141 ..      26     142 ..      17     160 .. 0.82

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.00035
       Mcm10  22 slkaiekakqsisAskllkqqkqkd.erlekrkkkseeiqkrvlseskkpvkssstskekksalkskksasevpkassslaasklPkLgrgfsegedvl 119
                 s+++++++ +s  A + l +  +    +++++ k+   + +r+l+e +  +++    ++k++ l  k+ a+  ++++++ +as + ++g  +++ +d+ 
  KOO21495.1  26 STDDQRSVRESGQAIAALDESTKARhLEMQQSIKELTGVTNRMLDELNDRKSNLLDPTTKRELLAQKSRAEDNIRRMQEDNASLQNQVGALSNKATDL- 123
                 455667788999999999998886656777777888899*********99999999999**************************************9. PP

       Mcm10 120 fldtspptaskssasaeaakla 141
                   +ts+++  k+ ++ e ++ +
  KOO21495.1 124 --TTSEQQI-KQREINEVKRAK 142
                 ..7888876.555555555555 PP

>> Gp-FAR-1  Nematode fatty acid retinoid binding protein (Gp-FAR-1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.4   0.0      0.68   7.6e+02      25      52 ..      19      49 ..       6      75 .. 0.51
   2 ?   10.2   3.4   0.00063      0.71      13     105 ..      56     146 ..      51     168 .. 0.78

  Alignments for each domain:
  == domain 1  score: 0.4 bits;  conditional E-value: 0.68
    Gp-FAR-1 25 qlkevvknykg...yknedellaalKkkspa 52
                 +++++++ ++    +   +++aal +++ a
  KOO21495.1 19 GIVQLFSSTDDqrsVRESGQAIAALDESTKA 49
                3455555544412233333344444444433 PP

  == domain 2  score: 10.2 bits;  conditional E-value: 0.00063
    Gp-FAR-1  13 ealknltdeekaqlkevvknykg...yknedellaalKkkspaLyekaeklqaklkekvdkLspeakeFvkkliakgrkleaqvlagekpdlselk 105
                 + +k+lt      l e+    ++   +++  ella  K++ +    ++++ +a l+++v +Ls++a ++++      ++++++ +++ k  ++++ 
  KOO21495.1  56 QSIKELTGVTNRMLDELNDRKSNlldPTTKRELLAQ-KSRAEDNIRRMQEDNASLQNQVGALSNKATDLTTS----EQQIKQREINEVKRAKHTIS 146
                 567777777777777776666667889999999987.*****************************976665....77777777777776655554 PP

>> YabA  Initiation control protein YabA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.1   0.1       1.1   1.3e+03       5      23 ..      53      71 ..      29      81 .. 0.56
   2 ?   11.2   3.3    0.0004      0.45       3      60 ..      85     142 ..      83     155 .. 0.85

  Alignments for each domain:
  == domain 1  score: 0.1 bits;  conditional E-value: 1.1
                HHHHHHHHHHHHHHHHHHH CS
        YabA  5 elfdkleeleeqleellee 23
                e+ ++++el+  ++++l+e
  KOO21495.1 53 EMQQSIKELTGVTNRMLDE 71
                2333333333333333333 PP

  == domain 2  score: 11.2 bits;  conditional E-value: 0.0004
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHXXXXXXXX CS
        YabA   3 kkelfdkleeleeqleelleeleelkeelaelleenaeLeleneklrerleeeekkek 60 
                 k+el+++ ++ e+++++++e+ ++l++++ +l ++ ++L++  +++++r  +e k++k
  KOO21495.1  85 KRELLAQKSRAEDNIRRMQEDNASLQNQVGALSNKATDLTTSEQQIKQREINEVKRAK 142
                 8999*******************************************99744333333 PP

>> UPF0242  Uncharacterised protein family (UPF0242) N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.5  11.1    0.0035         4      76     150 ..      57     136 ..      22     153 .. 0.70

  Alignments for each domain:
  == domain 1  score: 7.5 bits;  conditional E-value: 0.0035
     UPF0242  76 klteld.......eglktkeealeelqeeeeeLkeeldakeeelerlkeenqqLqekleaiaedfeelkleleeqLaekqel 150
                  ++el        ++l+  + +l + + + e L+++ +  e +++r++e+n++Lq +  a ++   + +  +e+q++++++ 
  KOO21495.1  57 SIKELTgvtnrmlDELNDRKSNLLDPTTKRELLAQK-SRAEDNIRRMQEDNASLQNQVGALSNKATD-LTTSEQQIKQREIN 136
                 233333444555667777777888888888877776.556789************999997776555.56789999998865 PP

>> ZapB  Cell division protein ZapB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.2   0.2       1.3   1.4e+03      56      56 ..      62      62 ..      30      81 .. 0.54
   2 ?    8.9   7.1    0.0018         2      14      54 ..      93     133 ..      64     145 .. 0.89

  Alignments for each domain:
  == domain 1  score: -0.2 bits;  conditional E-value: 1.3
        ZapB 56 e 56
                +
  KOO21495.1 62 T 62
                1 PP

  == domain 2  score: 8.9 bits;  conditional E-value: 0.0018
        ZapB  14 qkaidtitlLqmeieeLkeeneelkeenreleeeneqlkee 54 
                 + a d+i+++q+ ++ L+ ++ +l++++  l+ + +q k+ 
  KOO21495.1  93 SRAEDNIRRMQEDNASLQNQVGALSNKATDLTTSEQQIKQR 133
                 567799**************************888888864 PP

>> ADIP  Afadin- and alpha -actinin-Binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.0  15.0      0.01        11      29     125 ..      53     145 ..       7     151 .. 0.83

  Alignments for each domain:
  == domain 1  score: 6.0 bits;  conditional E-value: 0.01
        ADIP  29 kveeniaaiinviysLlqardrdleqreslnetirkleaeierlqskierlktqleqlerelalvqakerqlekklktleqklknekeelqrlknal 125
                 + +++i+++  v +++l  +  d++ + +  +t r+l a ++r + +i+r+++ +++l++++ ++ +k ++l++   +++q  ++e  e++r k ++
  KOO21495.1  53 EMQQSIKELTGVTNRMLDEL-NDRKSNLLDPTTKRELLAQKSRAEDNIRRMQEDNASLQNQVGALSNKATDLTT---SEQQIKQREINEVKRAKHTI 145
                 56788888888888888776.477777777889999***************************99999999985...56666667777777777765 PP

>> Spc7  Spc7 kinetochore protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.9  12.6    0.0044       4.9     152     257 ..      27     142 ..      16     161 .. 0.63

  Alignments for each domain:
  == domain 1  score: 5.9 bits;  conditional E-value: 0.0044
        Spc7 152 eedkelLekqeeeldellpeleeekaeleeeleklqeaaeeles.........idkeeLeelreelaelkaeieekkkelaelqeqleeleekieelke 241
                 ++d++ + ++ + + +l +++++++ e+++ +++l    + + +         +d++  +el  + ++++ +i++ +++ a+lq+q+ +l++k ++l++
  KOO21495.1  27 TDDQRSVRESGQAIAALDESTKARHLEMQQSIKELTGVTNRMLDelndrksnlLDPTTKRELLAQKSRAEDNIRRMQEDNASLQNQVGALSNKATDLTT 125
                 578888999999999999999999999999999998844333222222333344555555555555555566666666666666666666666666666 PP

        Spc7 242 qkselee.eiaeaervl 257
                 + +++++ ei+e +r +
  KOO21495.1 126 SEQQIKQrEINEVKRAK 142
                 65555432455555443 PP

>> APG6_N  Apg6 coiled-coil region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.1  10.9     0.014        16      44     104 ..      61     133 ..      22     147 .. 0.70

  Alignments for each domain:
  == domain 1  score: 6.1 bits;  conditional E-value: 0.014
      APG6_N  44 k...........qdeeleeleee......leklekeeeelleeLkelekereeleaelaaleeelealeeeeerfwre 104
                             +d +              ++l +++++++ +++++++ +++l++++ al++++ +l   e++  ++
  KOO21495.1  61 LtgvtnrmldelNDRKS-----NlldpttKRELLAQKSRAEDNIRRMQEDNASLQNQVGALSNKATDLTTSEQQIKQR 133
                 13333332222222233.....1333345678*************************************999987654 PP

>> Jnk-SapK_ap_N  JNK_SAPK-associated protein-1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.7   0.7     0.057        64      56     115 ..      17      72 ..      11      81 .. 0.63
   2 ?    6.5  11.2    0.0078       8.8      41     131 ..      47     139 ..      41     150 .. 0.67

  Alignments for each domain:
  == domain 1  score: 3.7 bits;  conditional E-value: 0.057
  Jnk-SapK_ap_N  56 reeleqLeteyerekelrkraeeeleeiedqweeerkelqekveqleeenrelelkakna 115
                     + + qL +  +++++ r+   + +  ++++ + ++ e+q+ +++l+  ++++    +++
     KOO21495.1  17 HKGIVQLFSSTDDQRSVRES-GQAIAALDESTKARHLEMQQSIKELTGVTNRML---DEL 72 
                    55566777766666655554.457778888888888888888888886544444...233 PP

  == domain 2  score: 6.5 bits;  conditional E-value: 0.0078
  Jnk-SapK_ap_N  41 lasrneeeeaeleelreeleqLeteyerekel..rkraeeeleeiedqweeerkelqekveqleeenrelelkaknaadqlsrleekeaelkk 131
                      +r+ e ++ ++el   ++++  e++++k+      +++el+      e++ + +qe  ++l++++  l+ ka ++++  ++++++e ++ k
     KOO21495.1  47 TKARHLEMQQSIKELTGVTNRMLDELNDRKSNllDPTTKRELLAQKSRAEDNIRRMQEDNASLQNQVGALSNKATDLTTSEQQIKQREINEVK 139
                    345566777778888888888888877777641145566777777778888888888888888888888887777766666666666655544 PP

>> BST2  Bone marrow stromal antigen 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.9   0.2    0.0085       9.5      55      87 ..      45      77 ..      23      81 .. 0.84
   2 ?    3.9   5.2     0.071        79      19      72 ..      85     139 ..      83     147 .. 0.74

  Alignments for each domain:
  == domain 1  score: 6.9 bits;  conditional E-value: 0.0085
                HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
        BST2 55 ekekaqsqkqqakvqelqgeikkLnqkLqdaea 87
                e  ka++ ++q+ ++el g  +++ ++L+d + 
  KOO21495.1 45 ESTKARHLEMQQSIKELTGVTNRMLDELNDRKS 77
                5679999*************9999999999876 PP

  == domain 2  score: 3.9 bits;  conditional E-value: 0.071
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH.HHHHHHHHHHHHHH CS
        BST2  19 trlLerqLtqaqeslreaeaqaatcnqtvvtLkasLekek.aqsqkqqakvqelq 72 
                 +r L +q  +a++++r+ + + a+ ++ v  L++  +  + +++q +q++++e +
  KOO21495.1  85 KRELLAQKSRAEDNIRRMQEDNASLQNQVGALSNKATDLTtSEQQIKQREINEVK 139
                 5666678899**********************87766655055555666677665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (203 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1871  (0.104356); expected 358.6 (0.02)
Passed bias filter:                      658  (0.0367003); expected 358.6 (0.02)
Passed Vit filter:                        91  (0.00507558); expected 17.9 (0.001)
Passed Fwd filter:                        17  (0.000948185); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              16  [number of targets reported over threshold]
# CPU time: 0.51u 0.24s 00:00:00.75 Elapsed: 00:00:00.39
# Mc/sec: 1561.13
//
Query:       KOO21496.1  [L=442]
Description: hypothetical protein Ctob_002071 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.8e-09   37.5   0.2    3.5e-08   33.3   0.2    2.6  1  Glyco_transf_8  Glycosyl transferase family 8


Domain annotation for each model (and alignments):
>> Glyco_transf_8  Glycosyl transferase family 8
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.3   0.2   1.9e-12   3.5e-08      87     254 ..     134     376 ..     107     378 .. 0.84

  Alignments for each domain:
  == domain 1  score: 33.3 bits;  conditional E-value: 1.9e-12
  Glyco_transf_8  87 sllnylRlylpel..fpkldkilylDaDvvvqgdlseLwdldlk.gkvlaaved......................................... 137
                      + n lR+ylp l  f  l+ + + D+D+ vq++++eL +++++ g  +aa                                            
      KOO21496.1 134 NPFNMLRFYLPYLgpFRGLETLFFADDDISVQRNIKEL-EVPMGsGMAIAATCNgwlwnprtkivemfqnghnwldaqqcvsylgrdsdhgflgc 227
                     567899*****995559********************8.8999977777777779**************************************** PP

  Glyco_transf_8 138 ................krfkkyl..nksepliaenfkpeacyFnaGvllfdldewrkenitetlikwlnlnekrtllklgdqdilnivfkgkvke 214
                                     + ++ +   ++++ l ++   + +  +n+G+  f+l+ wr++++te+  +++  n + + +   ++  ++ + +  +  
      KOO21496.1 228 latetestervgtcqsHEYAATVtnWTQTILGRTVNFATQPKWNFGLSRFNLTLWRQHKMTEVFDSFMHANYDGKVIPETSLAYGLGIPYFAFSD 322
                     **************9944444430034444444444578889**************************999999999999999999998866665 PP

  Glyco_transf_8 215 ldkkynvlglgy..............eqskkskkeitenaaviHyiGpaKPWld 254
                       k +n l                  +q++ +  +   +a+viH++G++KP ++
      KOO21496.1 323 RIKCWNDLVGDPafvdgmgyievkdiQQNGLNATKLLSDAIVIHWSGHVKPFDR 376
                     5566665544444555556677888889999999999**************766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (442 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       272  (0.015171); expected 358.6 (0.02)
Passed bias filter:                      258  (0.0143901); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.25s 00:00:00.71 Elapsed: 00:00:00.40
# Mc/sec: 3347.75
//
Query:       KOO21497.1  [L=277]
Description: mrs3p [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.8e-35  120.7   0.7    8.4e-20   70.5   0.0    3.1  3  Mito_carr  Mitochondrial carrier protein


Domain annotation for each model (and alignments):
>> Mito_carr  Mitochondrial carrier protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.9   0.0   0.00016       2.9       4      34 ..      14      44 ..      11      58 .. 0.82
   2 !   39.8   0.1   1.8e-14   3.2e-10       6      94 ..      58     160 ..      53     162 .. 0.88
   3 !   70.5   0.0   4.7e-24   8.4e-20       3      93 ..     170     260 ..     168     264 .. 0.94

  Alignments for each domain:
  == domain 1  score: 7.9 bits;  conditional E-value: 0.00016
                HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
   Mito_carr  4 svlkellaGglagavatlvttPldvvKtrlq 34
                s+l +++aG ++ ++a ++  P+d++K+   
  KOO21497.1 14 SLLPHVAAGIAGRVAAESFKSPFDLLKVLKK 44
                678899*********************9654 PP

  == domain 2  score: 39.8 bits;  conditional E-value: 1.8e-14
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSTTTSCSS..............HHHHHHHHHHHHHHHGGGTTHHHHHHHHHHHHHHHHHHHHHHH CS
   Mito_carr   6 lkellaGglagavatlvttPldvvKtrlqtqkksskksksaa..............ildvlkkiykeeGlrglyrGllpnllrvapasalkfvlyetlk 90 
                 +k+ll G l  +v++ + tP+d++  +lq+++  + +s  +a              i++ +  +++ eG rg +rG+ +++ +++ + a +fv+ye  +
  KOO21497.1  58 MKTLLGGPLVILVSVALRTPFDIIEQQLQLSAVGTGTSAAHAgqaqpqpftptpaaIRERILATWHAEGARGVWRGYPAAVGGITTYVAGYFVIYEAAR 156
                 5678888899999*****************76666555544466778888899999******************************************* PP

                 HHHC CS
   Mito_carr  91 rlll 94 
                 r+ll
  KOO21497.1 157 RFLL 160
                 *986 PP

  == domain 3  score: 70.5 bits;  conditional E-value: 4.7e-24
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSTTTSCSSHHHHHHHHHHHHHHHGGGTTHHHHHHHHHHHHHHHHHHHHHHHHHH CS
   Mito_carr   3 lsvlkellaGglagavatlvttPldvvKtrlqtqkksskksksaaildvlkkiykeeGlrglyrGllpnllrvapasalkfvlyetlkrll 93 
                  +++++l+aGgl+g ++++++tP+d +K+r+qt+   +++  + ++ +v ++++k  G rgl+rG+l +++ +ap+ a++f++ye   r+l
  KOO21497.1 170 HPTVSHLVAGGLGGGLTAVLATPFDCIKVRMQTKVYATAADPFPSMQHVTRETIKAAGWRGLWRGALERFTSNAPSGAIMFAVYEAGYRWL 260
                 57899*****************************99999999988****************************************988777 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (277 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       277  (0.0154498); expected 358.6 (0.02)
Passed bias filter:                      241  (0.0134419); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.28s 00:00:00.68 Elapsed: 00:00:00.41
# Mc/sec: 2019.88
//
Query:       KOO21498.1  [L=133]
Description: hypothetical protein Ctob_002073 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (133 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       207  (0.0115455); expected 358.6 (0.02)
Passed bias filter:                      163  (0.00909142); expected 358.6 (0.02)
Passed Vit filter:                        11  (0.000613531); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.25s 00:00:00.63 Elapsed: 00:00:00.42
# Mc/sec: 958.07
//
Query:       KOO21499.1  [L=441]
Description: lipid binding [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.1e-53  180.2   0.0    7.6e-53  179.9   0.0    1.1  1  DUF1336   Protein of unknown function (DUF1336)
     0.0059   16.0   5.3      0.011   15.1   5.3    1.4  1  SKG6      Transmembrane alpha-helix domain
  ------ inclusion threshold ------
        0.2   11.4   0.1       0.55   10.0   0.1    1.7  1  TMEM51    Transmembrane protein 51


Domain annotation for each model (and alignments):
>> DUF1336  Protein of unknown function (DUF1336)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  179.9   0.0   1.3e-56   7.6e-53       1     228 [.     183     417 ..     183     418 .. 0.84

  Alignments for each domain:
  == domain 1  score: 179.9 bits;  conditional E-value: 1.3e-56
     DUF1336   1 WsepdasgFkVRGpnYlkdkkKvpssgealyelvavdlfksdkkidhiarrvk.selekke.eekeakkvpfvlvvnlqlPg..eglslvlYfrls... 92 
                 W++ +as+F+VR  +Ylkd++  pss  +  el+av+lf++++   h+ +r + ++   +  ++ +a+ v  v+v+n+ lP     +++v+Y ++    
  KOO21499.1 183 WAPLSASQFHVRASSYLKDGRNAPSS--PGSELLAVELFRTPTAAYHLVARRDdCP--AHTlSRRTAEPVRLVVVINMILPAadGVYQVVFYHAIPdll 277
                 9***********************65..599************7777555554254..45568888999************553578889998555555 PP

     DUF1336  93 ....eearetlerledd...............flelavklfa..lerflegddafrnerfKliarvvngewivkkavggkPvLigkklkvkYfrskef. 169
                     +           +               +        +  lerf++g dafrn+rfKli+ vv+g+w+v+++vg++P+L+gk+l+++++r+ ++ 
  KOO21499.1 278 apggS-----------GsgsgdrgeeeeeagaA--------SrlLERFVNGTDAFRNARFKLIPSVVEGPWLVQQTVGTRPALLGKTLRQRFHRGVTAn 357
                 55440...........14444544321111113........145*************************************************999889 PP

     DUF1336 170 ..nylEvdvdihssaviakkglslvlgylkslvvdvgfviegqteeELPEqlLgavrlski 228
                    ylE+dvd++ss   a +++slv+ y+k+lv+d+gfvie+qt +ELPE++Lg+ r+ +i
  KOO21499.1 358 gtAYLEIDVDCNSSPT-AGRVVSLVKLYSKQLVIDLGFVIEAQTRDELPERVLGCGRVMRI 417
                 99**************.****************************************9887 PP

>> SKG6  Transmembrane alpha-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   5.3   1.9e-06     0.011      15      36 ..      72      94 ..      70      97 .. 0.49

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 1.9e-06
        SKG6 15 aVaVPVaViiivLlailif.vrR 36
                aV+V+V+V++++++ i++f  r 
  KOO21499.1 72 AVGVGVGVVLLLVALIFFFfLRS 94
                55555555555555444430444 PP

>> TMEM51  Transmembrane protein 51
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   0.1   9.3e-05      0.55      65     106 ..      72     113 ..      27     160 .. 0.70

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 9.3e-05
      TMEM51  65 yVLvGaGvalLlLsicLgirdkkrarqeeeelaraqeslqee 106
                  V vG+Gv+lLl+++ + +  + r+r + eel  ++++++e+
  KOO21499.1  72 AVGVGVGVVLLLVALIFFFFLRSRRRLSYEELPIMANKEDER 113
                 588***********9987655555555666766655555543 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (441 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       442  (0.0246528); expected 358.6 (0.02)
Passed bias filter:                      389  (0.0216967); expected 358.6 (0.02)
Passed Vit filter:                        54  (0.00301188); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.53u 0.28s 00:00:00.81 Elapsed: 00:00:00.45
# Mc/sec: 2918.45
//
Query:       KOO21500.1  [L=571]
Description: protein phosphatase 2c isoform gamma [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.5e-37  128.5   0.0    4.6e-37  128.0   0.0    1.2  1  PP2C      Protein phosphatase 2C
    9.4e-05   22.1   0.7    0.00027   20.6   0.0    2.1  2  PP2C_2    Protein phosphatase 2C


Domain annotation for each model (and alignments):
>> PP2C  Protein phosphatase 2C
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  128.0   0.0   5.1e-41   4.6e-37       6     237 ..     112     364 ..     107     386 .. 0.85

  Alignments for each domain:
  == domain 1  score: 128.0 bits;  conditional E-value: 5.1e-41
                 EEECCCCSSHHEEEECCCCTCTTCCCCCCEEEEEEEEESSSHHHHHHHHHHHHHHHHHHHCHTTHHHHHHHHHHHHHHHHHHHHHHHHH.C.HCCT-EE CS
        PP2C   6 selqgarksmedahislanlesssgkssvsffavfdghggseaakyarehleeilksqksfeelekleqalrksfladtdeelksskan.t.epsksGs 102
                 ++ qg r++ ed  +++ n     g    ++f+vfdghgg +a++ya++ l+ ++ +++  ++     qal+++f++ td el  +  + + +  + G+
  KOO21500.1 112 HQRQGPRSTQEDVAVAKVNE----GAFVHAYFGVFDGHGGAQASTYAASMLHSHVMRSEYMPTI---VQALQDGFMR-TDAELLHHFSMrRgKGNNQGT 202
                 66667777777777766644....566689**********************999999999988...8*********.9999999999976899***** PP

                 EEEEEEEETTEEEEEEESS-EEEEEETTEEE...EECS---STT........SHHHHHHHHHTT--EEECCEEETTT...BSBSB-EE-GGGTCCCC.. CS
        PP2C 103 tavvalirgtklyvAnvGDSravLcrkgnak...keltedHkps........dedEreRIeeaggsvsngegrvngs...LavsRalGDlelkpket.. 185
                  a v+l++++kl +A++GD+ra+L++++ +     el++dH ++        ++dE+eR+e+ag ++++  g+v+     L ++RalGDl lk ++   
  KOO21500.1 203 AAAVTLVTDDKLVTAWAGDCRALLVKRSSSPvpyIELSRDHSAEqvsafcqpRPDEVERVEAAGARMDP-GGYVCIHdhsLPMTRALGDLPLKVGPGrs 300
                 **************************999888889********944444444589*************7.7777755555*************98889* PP

                 ......CCSTSB---EEEEEEE-TTEEEEEEE-HHHH.TTSHHHHHHHHHHHHHHHHT.....H CS
        PP2C 186 ......eeqlvsaePdvtsvklteedefliLacdGlw.dvlsdqeavdlvrdelekkk.....s 237
                       + q+v+  P+v++ +++ +d ++iLa+dGl+  v+++ e++++vr++le+ +     +
  KOO21500.1 301 wrdtpaHAQVVTGRPEVSVYERSADDLCVILASDGLFgSVMTSAEVASVVREQLEQVHahaldA 364
                 ******9******************************77***************9876555543 PP

>> PP2C_2  Protein phosphatase 2C
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.6   0.0     3e-08   0.00027      23     204 ..     131     365 ..     110     369 .. 0.77
   2 ?   -1.6   0.1      0.19   1.7e+03      33      50 ..     424     441 ..     424     490 .. 0.84

  Alignments for each domain:
  == domain 1  score: 20.6 bits;  conditional E-value: 3e-08
      PP2C_2  23 ggsll...a.VaDGaGSakrSerGariaveavvealaelleseeeeeeallraleaailadvlkeeaeaqdaelkdyatTllaavvtpdeivalqiGDG 117
                 +g+++   + V DG+G a+ S  +a ++   v++  +e++ +  +  ++ + +  a++l +      + ++ + +  +t+ ++++vt+d++v ++ GD+
  KOO21500.1 131 EGAFVhayFgVFDGHGGAQASTYAASMLHSHVMR--SEYMPTIVQALQDGFMRTDAELLHH-----FSMRRGKGNNQGTAAAVTLVTDDKLVTAWAGDC 222
                 334433232499*******999998887776654..3444444555556666777777755.....4667779999*********************** PP

      PP2C_2 118 aivvrdrdgevqllgepdsgeyanqttfltsedaeeel........................................................rirrl 160
                  +++++r ++  +  e      a+q+ +++++ + e                                                          ++ + 
  KOO21500.1 223 RALLVKRSSSPVPYIELSRDHSAEQVSAFCQPRPDE-VerveaagarmdpggyvcihdhslpmtralgdlplkvgpgrswrdtpahaqvvtgrpEVSVY 320
                 **********99998988888888899998885444.22468999999***************************************999999977766 PP

      PP2C_2 161 k.ledgdalllmTDGlanslrdeerfaelleellrvleeegvseq 204
                 +   d   ++l++DGl  s+ +++ +a+ ++e+l+ + +  ++++
  KOO21500.1 321 ErSADDLCVILASDGLFGSVMTSAEVASVVREQLEQVHAHALDAE 365
                 633444567899*****9999999999999999988877766655 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 0.19
      PP2C_2  33 aGSakrSerGariaveav 50 
                 a+Sa+ S  G+ +a+  +
  KOO21500.1 424 ATSASTSSDGSSVATAPI 441
                 799*********999865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (571 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       342  (0.0190752); expected 358.6 (0.02)
Passed bias filter:                      262  (0.0146132); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.53u 0.29s 00:00:00.82 Elapsed: 00:00:00.45
# Mc/sec: 3847.36
//
Query:       KOO21501.1  [L=621]
Description: hypothetical protein Ctob_002074 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.5e-05   25.4   0.2    1.5e-05   25.4   0.2    3.5  3  PEMT      Phospholipid methyltransferase
  ------ inclusion threshold ------
        9.3    6.4  12.3        1.1    9.4   4.6    3.2  2  DUF962    Protein of unknown function (DUF962)


Domain annotation for each model (and alignments):
>> PEMT  Phospholipid methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.7   1.1     0.074   6.6e+02      47      86 ..      44      83 ..      39      96 .. 0.73
   2 ?   -0.8   0.6      0.22   1.9e+03      59      87 ..     434     463 ..     430     469 .. 0.71
   3 !   25.4   0.2   1.6e-09   1.5e-05       4      90 ..     508     594 ..     507     603 .. 0.89

  Alignments for each domain:
  == domain 1  score: 0.7 bits;  conditional E-value: 0.074
        PEMT 47 iYrylnnPeyvgstlgflGlaLitgsaaglllallvllvy 86
                ++ yl  P  +g+ +++l++ L +  ++  l+++ +++++
  KOO21501.1 44 VFTYLGSPAAMGMHAAWLAIILPSTPLKLWLASAAAHALI 83
                799999***********99999877666544444444433 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 0.22
        PEMT  59 stlgflGlaLitgsaag.lllallvllvyl 87 
                  +l+  +++L+  s+ + + l+ +v+++++
  KOO21501.1 434 YLLCATAVSLAARSYSVfFCLTSFVHYAVY 463
                 678889999999999984555555555554 PP

  == domain 3  score: 25.4 bits;  conditional E-value: 1.6e-09
        PEMT   4 ilGlllialglllvlssiealgefgtfygdfFlelmdklvtsGiYrylnnPeyvgstlgflGlaLitgsaaglllallvllvylial 90 
                 i++l+l+a g+ l+  + ++lg+  t++g   +  +   v +++Y ++ +P+ +g+++g+lG   + g+  ++ + + v+++ ++  
  KOO21501.1 508 IIALALLAGGFGLAGLAASRLGVDRTYFGWELGVISGDYVAKFPYGVIPHPMILGGVIGWLGFHKLDGFREAFPAYVPVHIALYLCH 594
                 5699**************************9999999*************************9988888888888888887777655 PP

>> DUF962  Protein of unknown function (DUF962)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   4.6   0.00013       1.1      11      63 ..      16     113 ..       8     117 .. 0.76
   2 ?   -0.9   0.8       0.2   1.8e+03       7      12 ..     459     464 ..     360     569 .. 0.78

  Alignments for each domain:
  == domain 1  score: 9.4 bits;  conditional E-value: 0.00013
      DUF962  11 YlaeHsnpinrllHfigvplilltvlllllrak.............................................lklllalfvvgyifafvGHf 63 
                 + + H++p n++lH++ +p++++++ +l+++                                                  +++lf++ y+++ v+Hf
  KOO21501.1  16 FRKFHKHPLNVALHLVTTPAAVYAISFLVFTYLgspaamgmhaawlaiilpstplklwlasaaahalicaaaiattmtTLSATVLFAASYFAQDVAHF 113
                 6678*****************99999888887778889999988887777777777777777777777777777666555556666666777766666 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 0.2
      DUF962   7 fyafYl 12 
                 +ya Y+
  KOO21501.1 459 HYAVYA 464
                 344444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (621 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       638  (0.0355848); expected 358.6 (0.02)
Passed bias filter:                      329  (0.0183502); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.55u 0.28s 00:00:00.83 Elapsed: 00:00:00.42
# Mc/sec: 4396.03
//
Query:       KOO21502.1  [L=605]
Description: RNA ligase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (605 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       271  (0.0151152); expected 358.6 (0.02)
Passed bias filter:                      243  (0.0135535); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.50u 0.25s 00:00:00.75 Elapsed: 00:00:00.41
# Mc/sec: 4452.71
//
Query:       KOO21503.1  [L=869]
Description: elongation factor tu gtp-binding domain-containing protein 1 isoform 1 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.9e-52  176.1   0.0    8.2e-52  175.6   0.0    1.2  1  GTP_EFTU  Elongation factor Tu GTP binding domain
    7.6e-19   67.5   0.0    1.7e-18   66.4   0.0    1.6  1  EFG_C     Elongation factor G C-terminus
     0.0072   16.4   0.0      0.018   15.1   0.0    1.6  1  EFG_II    Elongation Factor G, domain II


Domain annotation for each model (and alignments):
>> GTP_EFTU  Elongation factor Tu GTP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  175.6   0.0   1.4e-55   8.2e-52       3     182 ..      20     249 ..      18     366 .. 0.86

  Alignments for each domain:
  == domain 1  score: 175.6 bits;  conditional E-value: 1.4e-55
                 EEEEEEEESTTSSHHHHHHHHHHHTTSSCHHHHHHHHHST.....HCHSHHHHHHTSCSSCEEEEEE.....TTCSSEEEEEEEESSSGGGHHHHHHHH CS
    GTP_EFTU   3 irnigiighvDhGKtTLtdrLlyktgaiskkgekaeeerv.....lDtlkeErergiTiksaaisle.....ketkkylinliDtPGHvdFskevirgl 91 
                 +rni+ii+hvDhGKtTL d+Ll+ +++i+ k+   + ++      +D++++E+ rgiT+k++ i l+       +    +nliD+PGHvdF  ev++++
  KOO21503.1  20 TRNICIIAHVDHGKTTLADNLLAGSSDIHGKSILSQRQAGlglryMDSREDEQDRGITMKASCIALSvepaaPGGMPSIVNLIDSPGHVDFCGEVSAAA 118
                 79***************************9888775444456666*********************998974499999********************* PP

                 HT-SEEEEEEETTTBSTHHHHHHHHHHHHTTTEEEEEEESCGSTHHHHHHHHHHHHHHHHHH..................................... CS
    GTP_EFTU  92 rvlDgavlvvdaveGvepqteevlrlalkegvpiivfiNKmDrlkaelkeiveevkqklsrk..................................... 153
                 r  Dga+lvvdaveGv++qt  vl++a++e+v +++++NK+Drl+ elk ++ e+ ++++++                                     
  KOO21503.1 119 RLSDGALLVVDAVEGVCVQTHAVLQQAWDEHVVPVLVLNKIDRLIVELKLSPLEAWHHMKNVvqqvnaiaghlyaraaagerdadnlvaearatageay 217
                 ********************************************9999998888888886668888999999999999999999988888888888887 PP

                 .......HHHHHHHHHTTTTTEEEEEEBTTTTBTHH CS
    GTP_EFTU 154 .......eeklekygekgekevpvvfgSalkgegvk 182
                         ++l+ ++e    + +v+f+Sa++g+++ 
  KOO21503.1 218 gvadetrVGELQFAPE----KGNVLFASAMHGWAFG 249
                 7777444444444444....667**********664 PP

>> EFG_C  Elongation factor G C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.4   0.0   2.9e-22   1.7e-18       2      85 ..     728     812 ..     727     814 .. 0.96

  Alignments for each domain:
  == domain 1  score: 66.4 bits;  conditional E-value: 2.9e-22
                 EEEEEEEEEEEEECCCCCCHHHHHHHCT-EEEEEEEE..TTEEEEEEEEEGGG-TTHHHCHHHCTTTS-EEEEEEEEEEE--HHH CS
       EFG_C   2 llEPivkveievpeeyvgkvisdlssrrGeiedmeqd.asgrviieaeiPlaeligfateLrslTkGegsfsmefsgYeevpgdk 85 
                 +lEP++ +e++++++ +gk+++ ls+rr+ i++ e + ++  ++i+a++P+ae++gfat+Lr+ T+G +  ++ fs++e +++d+
  KOO21503.1 728 VLEPVYLCELQTSQDSMGKAYGVLSKRRAAILSEELKeGTPIFTIRAHLPVAESFGFATDLRKSTSGAAHPQLVFSHFEALHQDP 812
                 89*********************************998899**************************************999875 PP

>> EFG_II  Elongation Factor G, domain II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.0     3e-06     0.018      21      67 ..     522     567 ..     519     576 .. 0.87

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 3e-06
      EFG_II  21 lskaLarlleEDptlrverdeeTketilsGmGelHleivverlkrey 67 
                 l + L+ l++ Dp+++v + + T+e +++  Ge+Hle  +  l++ +
  KOO21503.1 522 LVAGLQLLARADPSVDVATLP-TGEHVIATCGEVHLERCLHDLNNTF 567
                 5678999**********9865.***************9999998877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (869 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       330  (0.0184059); expected 358.6 (0.02)
Passed bias filter:                      257  (0.0143343); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.60u 0.27s 00:00:00.87 Elapsed: 00:00:00.40
# Mc/sec: 6452.84
//
Query:       KOO21504.1  [L=580]
Description: zinc finger ran-binding domain-containing protein 3 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.5e-11   43.3   2.0      1e-10   41.4   0.0    2.7  3  Mito_carr   Mitochondrial carrier protein
    3.1e-08   33.9   0.0    5.9e-08   33.0   0.0    1.4  1  Helicase_C  Helicase conserved C-terminal domain
  ------ inclusion threshold ------
      0.069   13.1   0.1       0.15   12.0   0.1    1.5  1  DUF2116     Uncharacterized protein containing a Zn-ribbon (D


Domain annotation for each model (and alignments):
>> Mito_carr  Mitochondrial carrier protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.7   0.2       1.9   1.2e+04      13      31 ..     260     278 ..     257     289 .. 0.74
   2 !   41.4   0.0   1.7e-14     1e-10      39      95 ..     473     529 ..     438     531 .. 0.86
   3 ?    0.4   0.1      0.11   6.3e+02       9      28 ..     547     566 ..     540     569 .. 0.84

  Alignments for each domain:
  == domain 1  score: -3.7 bits;  conditional E-value: 1.9
                 HHHHHHHHHHHHHHHHHHH CS
   Mito_carr  13 glagavatlvttPldvvKt 31 
                 ++a+a++ ++  P d + t
  KOO21504.1 260 AAAAAASRVLGSPSDAIAT 278
                 5678888888888887766 PP

  == domain 2  score: 41.4 bits;  conditional E-value: 1.7e-14
                 SSTTTSCSSHHHHHHHHHHHHHHHGGGTTHHHHHHHHHHHHHHHHHHHHHHHHHHCT CS
   Mito_carr  39 sskksksaaildvlkkiykeeGlrglyrGllpnllrvapasalkfvlyetlkrlllk 95 
                  +  +k+a+++d+  ++y++eG+ +l+ G+ +n++r++p+s ++f++ye l + l++
  KOO21504.1 473 DQGGRKYAGLVDATLQTYRSEGIGALWLGFRINIVRTIPQSIVTFTMYEALSTALQR 529
                 456677888*****************************************9998875 PP

  == domain 3  score: 0.4 bits;  conditional E-value: 0.11
                 HHHHHHHHHHHHHHHHHHHH CS
   Mito_carr   9 llaGglagavatlvttPldv 28 
                  ++G+++ga+a +v  P+ v
  KOO21504.1 547 GATGAVSGAAAPVVSKPVHV 566
                 579***********999876 PP

>> Helicase_C  Helicase conserved C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.0   0.0   9.9e-12   5.9e-08      14     111 .]      40     141 ..      28     141 .. 0.88

  Alignments for each domain:
  == domain 1  score: 33.0 bits;  conditional E-value: 9.9e-12
                 TTTSEEEEEESSHHHHHHHHHHHHHTTSTEEEESTTSTHHHHHHHHHHHH...TTSSS.EEEESGGGTSSSTSTTESEEEESSSSSSHHHHHHHHTTSS CS
  Helicase_C  14 eeggkilifvntidrlekvklllekkgikvavlhgelpqnereeileqfn...kgesd.vLiatdvaerGidipkvnlVinfdlprnvtsyiqriGRtg 108
                  ++g+ l f++ + +l+ v+    +  +++ +++g+ p+ er   +++f+   +++   +L++  +a++G++++++++ ++ +l +++ ++ q+ +R++
  KOO21504.1  40 CRDGRLLFFAHHKAMLDAVDAAAASARVRTFRIDGSVPAVERAGLVNSFQalpADTPAiFLLSILAAGQGLTLTGASTAVFGELRWTPGELLQAEDRCH 138
                 5789999*********98777777789**********************9887444445**************************************** PP

                 STT CS
  Helicase_C 109 Rag 111
                 R+g
  KOO21504.1 139 RIG 141
                 *97 PP

>> DUF2116  Uncharacterized protein containing a Zn-ribbon (DUF2116)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.1   2.6e-05      0.15      17      42 ..     380     405 ..     375     410 .. 0.88

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 2.6e-05
     DUF2116  17 esfCsekCqeeyekkrkkvarsqqil 42 
                   fCs++C ++++++  ++   +q++
  KOO21504.1 380 SPFCSDRCASQFSSAESQASARRQLF 405
                 569***************99999987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (580 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       629  (0.0350828); expected 358.6 (0.02)
Passed bias filter:                      368  (0.0205254); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.55u 0.27s 00:00:00.82 Elapsed: 00:00:00.43
# Mc/sec: 4027.22
//
Query:       KOO21505.1  [L=331]
Description: hypothetical protein Ctob_002067 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (331 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       996  (0.0555525); expected 358.6 (0.02)
Passed bias filter:                      470  (0.0262145); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.48u 0.23s 00:00:00.71 Elapsed: 00:00:00.39
# Mc/sec: 2526.13
//
Query:       KOO21506.1  [L=964]
Description: hypothetical protein Ctob_003494 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.2e-16   60.1   0.0      3e-12   46.6   0.0    2.2  2  DUF900    Alpha/beta hydrolase of unknown function (DUF900)
  ------ inclusion threshold ------
      0.067   13.5   0.0       0.15   12.4   0.0    1.5  1  CKS       Cyclin-dependent kinase regulatory subunit


Domain annotation for each model (and alignments):
>> DUF900  Alpha/beta hydrolase of unknown function (DUF900)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.6   0.0   3.3e-16     3e-12      18     114 ..     581     680 ..     574     686 .. 0.85
   2 !   11.0   0.0   2.4e-05      0.21     115     177 ..     745     811 ..     736     821 .. 0.76

  Alignments for each domain:
  == domain 1  score: 46.6 bits;  conditional E-value: 3.3e-16
      DUF900  18 akeilvfvhGynnsFedavlraaqiaddlknqg..aivvfsWPsagklldynyDre...saeasrdalekllrylatkksakkihllaHSmGtwlvlea 111
                 + e ++f+hG+n + +da+ r+aq+ +   +++   + vf WP +gk+ +y   ++   +  a ++++ ++++ l ++ + ++ih+laHS G +l+  a
  KOO21506.1 581 NYEAVIFMHGFNSPTSDALKRIAQLWALGDFPNhlHPFVFGWP-GGKTSGYFNAKHvasQEPAMAQDFVDFIESLIEA-GCRTIHILAHSLGAMLLFTA 677
                 55789********************99888888779*******.5788999988884322234578999******999.9****************999 PP

      DUF900 112 lrq 114
                 l  
  KOO21506.1 678 LPL 680
                 865 PP

  == domain 2  score: 11.0 bits;  conditional E-value: 2.4e-05
      DUF900 115 laieade..pavea.kikeviLaAPDidvdvfkkqle.slgkeskeltvyvsrdDraLklSaliegd 177
                 l++++++  +++ + +++  +L+ PD  ++ f k+   +l k   ++t+y+ + D aL+ S++ + +
  KOO21506.1 745 LSKHPRQppRSGPKmRLATTLLLNPDASLNRFVKHDFaALRKLCDHITLYADHADGALAYSEFFNRE 811
                 55555554422333589999*********887665543999999*****************987766 PP

>> CKS  Cyclin-dependent kinase regulatory subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   1.7e-05      0.15      15      55 ..     472     512 ..     462     516 .. 0.91

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 1.7e-05
         CKS  15 RhViLpkellkkipksrlLsekewraLgIqqskgWehyeih 55 
                 R+V+++++ +++   s+l++e e r+L  +q++ W+ y++ 
  KOO21506.1 472 RYVVVSEQGIRNFVLSELMNEGEARELAAKQTLNWVLYKVK 512
                 8899998888888889**********************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (964 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       615  (0.034302); expected 358.6 (0.02)
Passed bias filter:                      470  (0.0262145); expected 358.6 (0.02)
Passed Vit filter:                        50  (0.00278878); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.69u 0.26s 00:00:00.95 Elapsed: 00:00:00.42
# Mc/sec: 6841.01
//
Query:       KOO21507.1  [L=617]
Description: hypothetical protein Ctob_003495 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
     0.0074   16.5   0.8        1.8    8.9   0.0    2.5  2  HALZ          Homeobox associated leucine zipper
     0.0088   15.8   2.8        7.5    6.4   0.0    3.4  3  DivIC         Septum formation initiator


Domain annotation for each model (and alignments):
>> HALZ  Homeobox associated leucine zipper
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.6   0.2     0.002        18      21      39 ..      29      47 ..      26      51 .. 0.86
   2 !    8.9   0.0    0.0002       1.8      21      42 ..      88     109 ..      85     110 .. 0.88

  Alignments for each domain:
  == domain 1  score: 5.6 bits;  conditional E-value: 0.002
        HALZ 21 ydsLkkenekLkaelqeLk 39
                 + L++e+ +L+a+l+ L 
  KOO21507.1 29 LETLERERAALQAQLAALI 47
                589************9996 PP

  == domain 2  score: 8.9 bits;  conditional E-value: 0.0002
        HALZ  21 ydsLkkenekLkaelqeLkekl 42 
                  ++L+++n+ L a++  L++ l
  KOO21507.1  88 REALRQQNDVLAAQIDALRSTL 109
                 699***************9865 PP

>> DivIC  Septum formation initiator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.4   0.0   0.00083       7.5      12      40 ..      22      50 ..      15      60 .. 0.85
   2 !    5.0   0.2    0.0022        20      34      52 ..      89     107 ..      87     134 .. 0.86
   3 ?    2.4   0.1     0.015   1.3e+02      23      50 ..     534     561 ..     531     567 .. 0.84

  Alignments for each domain:
  == domain 1  score: 6.4 bits;  conditional E-value: 0.00083
                XXXXXXHHHHHHHHHHHHHHHHHHHHHHH CS
       DivIC 12 gkkgllaykqlkqeiaalqaelaklkaen 40
                g+++  a+  l++e+aalqa+la+l a +
  KOO21507.1 22 GEGSSAALETLERERAALQAQLAALIAHE 50
                788899999**************998765 PP

  == domain 2  score: 5.0 bits;  conditional E-value: 0.0022
                 HHHHHHHHHHHHHHCC-XX CS
       DivIC  34 aklkaeneeLeaevkdLks 52 
                 ++l+++n+ L+a+++ L+s
  KOO21507.1  89 EALRQQNDVLAAQIDALRS 107
                 5799999999999999986 PP

  == domain 3  score: 2.4 bits;  conditional E-value: 0.015
                 HHHHHHHHHHHHHHHHHHHHHHHHHCC- CS
       DivIC  23 kqeiaalqaelaklkaeneeLeaevkdL 50 
                 ++e+aal++ l++++++     +++++L
  KOO21507.1 534 QEEVAALEEALDEVRERMGIFRQQLQQL 561
                 79**************988888888777 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (617 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1059  (0.0590663); expected 358.6 (0.02)
Passed bias filter:                      488  (0.0272185); expected 358.6 (0.02)
Passed Vit filter:                        51  (0.00284455); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.62u 0.29s 00:00:00.90 Elapsed: 00:00:00.43
# Mc/sec: 4265.71
//
Query:       KOO21508.1  [L=392]
Description: modification methylase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.4e-53  181.1   0.0    4.3e-53  180.8   0.0    1.1  1  DNA_methylase  C-5 cytosine-specific DNA methylase
  ------ inclusion threshold ------
      0.055   13.2   0.0      0.093   12.5   0.0    1.2  1  Met_10         Met-10+ like-protein


Domain annotation for each model (and alignments):
>> DNA_methylase  C-5 cytosine-specific DNA methylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  180.8   0.0   4.8e-57   4.3e-53       1     171 [.      44     226 ..      44     256 .. 0.92

  Alignments for each domain:
  == domain 1  score: 180.8 bits;  conditional E-value: 4.8e-57
                    -EEEEES-TT-HHHHHHHHTT-EEEEEEE--TTTHHHHHHH-..-SEEEES-TTTS-GS--.-SEEEE---GGGTECTSEE--T.TSGGGHHHHHH CS
  DNA_methylase   1 lkfidLfaGiGGfrlgleaagfecvaaseidkkaaktYeanfk.kvsigDitkidkkklpediDlLvgGfPCqpfSvaGkqkgf.edtrgtLffei 94 
                    ++f +LfaGiGGfr++lea g+ cv+ase+d++aa+tY+ nf+  ++ gDit+++  +lp  +DlLvgGfPCq fS aG+q g  +d rg+L+ e+
     KOO21508.1  44 FRFAELFAGIGGFRVALEALGGACVFASEMDPHAAATYALNFGaLPEAGDITEVEAADLPP-HDLLVGGFPCQCFSLAGEQLGLrDDARGQLYLEC 138
                    79*****************************************88899************6.*********************8356799****** PP

                    HHHHHHH--SEEEEEEEGGGGGGCCS............HHHHHHHHHHHHHTEEEEEEEEEGGGTT-SB--EEEEEEEEEGGG------ CS
  DNA_methylase  95 iriikekkPkvfllENVkgLlkhdkg............ktlkvilekleelGYevsykllnasdyGvpQnReRvfivgirkdlelnvlv 171
                    +ri+   +P++fllENV gL + d g            ++ + i+ +l+++GY v+  +l a  +GvpQ R+R+f+vg+r+    +  +
     KOO21508.1 139 CRILCTGRPAAFLLENVVGLFTLDGGvfhreyeqrrpgRVHERIVADLSSCGYVVQSAVLGAHAFGVPQFRDRLFLVGFRSADAAS-RF 226
                    ***********************999999999************************************************976543.33 PP

>> Met_10  Met-10+ like-protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0     1e-05     0.093     106     137 ..      48      78 ..      45      86 .. 0.86

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 1e-05
                 ETT-TTTCCHHHCCHHTTSSEEEEEES-HHHH CS
      Met_10 106 dvfAGiGpfaipiakyskakrvlaidlnPesv 137
                 ++fAGiG f +++  ++ a  v+a +++P++ 
  KOO21508.1  48 ELFAGIGGFRVALEALGGAC-VFASEMDPHAA 78 
                 68************977665.*********86 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (392 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       364  (0.0203023); expected 358.6 (0.02)
Passed bias filter:                      258  (0.0143901); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.46u 0.25s 00:00:00.71 Elapsed: 00:00:00.42
# Mc/sec: 2828.75
//
Query:       KOO21509.1  [L=250]
Description: photosystem ii reaction center family protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.4e-08   35.0   0.2    0.00011   22.4   0.0    2.1  2  PsbP      PsbP


Domain annotation for each model (and alignments):
>> PsbP  PsbP
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.7   0.2   2.4e-05      0.43       2      23 ..     116     137 ..     115     144 .. 0.90
   2 !   22.4   0.0   6.2e-09   0.00011      84     154 ..     175     246 ..     146     248 .. 0.74

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 2.4e-05
                 SEEEEEETTTTEEEEEETTEEE CS
        PsbP   2 gfqeytdeedgysflyPsgWqe 23 
                  f++y+de+++++f yP+ +++
  KOO21509.1 116 AFKRYVDETKRFEFRYPATYVQ 137
                 589***************9987 PP

  == domain 2  score: 22.4 bits;  conditional E-value: 6.2e-09
                 EEEEEEEEEEET.TEEEEEEEEEEEETTE..EEEEEEEEEEEETTEEEEEEEEEEHHHHCCCHHHHHHHHHC- CS
        PsbP  84 aelidaeereaddgktyYeleytvkspde..qerhqlaavavsngkLYtltlqtpekrwekvekklekvvkSF 154
                    +++  +    g +  ++ey+v+ ++e      ++ +v+  +g LYt++  +p   we+  ++l+++++SF
  KOO21509.1 175 GVAVAVGPQGG-TGDENLSFEYRVEYTSEaqPPSYTICVVGAARGSLYTFASRVPAAVWEERASELREAASSF 246
                 44444444333.477777888999887775456677777788******************************* PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (250 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       373  (0.0208043); expected 358.6 (0.02)
Passed bias filter:                      310  (0.0172904); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.25s 00:00:00.65 Elapsed: 00:00:00.39
# Mc/sec: 1928.13
//
Query:       KOO21510.1  [L=262]
Description: hypothetical protein Ctob_003492 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.4e-27   95.7   0.0    2.2e-27   95.0   0.0    1.3  1  tRNA_bind  Putative tRNA binding domain


Domain annotation for each model (and alignments):
>> tRNA_bind  Putative tRNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   95.0   0.0   1.2e-31   2.2e-27       1      95 [.     104     199 ..     104     200 .. 0.98

  Alignments for each domain:
  == domain 1  score: 95.0 bits;  conditional E-value: 1.2e-31
                 EEEEEEEEEEEETTSSTEEEEEEEESSSSEEEEEESCTTTST.HHHHTTEEEEEETTSESEEETTEEESSEE-EEECCESSCEEEEEESST--TTC CS
   tRNA_bind   1 lrvGkvleaeehpnadkLlvlkvdvGeeeprqivsgaknvye.peelvakkvvvvanlkpkklrGveSeGMilsaeeldekevgilelpadveaGe 95 
                 +rvGk++ea  hp+++kL  +k+dvGe+eprqi sg++ +y+  e lv++kv vv+nlk +kl G+ S+GM+l+a++ d ++v ++e+p+++ +Ge
  KOO21510.1 104 VRVGKIVEAWAHPDSEKLWCEKIDVGEAEPRQIASGLRAYYPnAEMLVGRKVLVVCNLKEAKLAGFASNGMVLCAASPDRSTVAFVEPPESAAPGE 199
                 79****************************************999*******************************99****************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (262 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       519  (0.0289475); expected 358.6 (0.02)
Passed bias filter:                      359  (0.0200234); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.26s 00:00:00.68 Elapsed: 00:00:00.42
# Mc/sec: 1886.69
//
Query:       KOO21511.1  [L=1245]
Description: a chain of blebbistatin analogs bound to dictyostelium discoideum myosin ii [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
   7.3e-174  579.7   8.7   4.2e-132  441.7   0.0    2.9  3  Myosin_head    Myosin head (motor domain)
    8.6e-45  153.4   0.0    8.6e-45  153.4   0.0    1.8  2  Tub            Tub family
    0.00025   20.7   0.0    0.00025   20.7   0.0    2.4  1  DUF3527        Domain of unknown function (DUF3527)
    0.00085   19.4   0.1     0.0016   18.5   0.1    1.5  1  WW             WW domain
  ------ inclusion threshold ------
      0.025   14.8   0.0       0.11   12.8   0.0    2.1  1  AAA_22         AAA domain
       0.11   11.3  31.2       0.18   10.6  31.2    1.2  1  Caldesmon      Caldesmon
       0.21   11.4   1.0       0.64   10.0   1.0    1.9  1  IQ             IQ calmodulin-binding motif
       0.47   10.7   4.7       0.75   10.0   0.6    3.0  2  Tugs           Tethering Ubl4a to BAGS domain
       0.48   10.8   0.0       0.48   10.8   0.0    3.3  1  AAA_16         AAA ATPase domain
        1.1    9.2  14.2        1.8    8.4  14.2    1.3  1  TFIIA          Transcription factor IIA, alpha/beta subunit
          3    6.0  19.7          5    5.3  19.7    1.2  1  CDC45          CDC45-like protein


Domain annotation for each model (and alignments):
>> Myosin_head  Myosin head (motor domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  143.9   0.1   3.2e-45   5.3e-42       1     143 [.       5     143 ..       5     144 .. 0.96
   2 !  441.7   0.0  2.6e-135  4.2e-132     168     676 ..     144     647 ..     143     648 .. 0.95
   3 ?   -5.9   4.9       7.1   1.2e+04     275     333 ..     841     898 ..     833     907 .. 0.76

  Alignments for each domain:
  == domain 1  score: 143.9 bits;  conditional E-value: 3.2e-45
                  -SBGCGSSS-SHHHHHHHHHHHHHTT--EEEETTEEEEE--SS--STSSHHHHHHHTTS-GGGS.SSSHHHHHHHHHHHHHHHTSEEEEEEESSTTSS CS
  Myosin_head   1 vedlveLsllneasvlenlkkRykkdliYtysglvlvavnPykklkiysedvikaykgkkreel.pPHifaiadeayrslledkenqsilisGEsGAG 97 
                  v+dl++Ls ++++ v+  lk+R++kd+iYt  g vl+a+nPyk++++y++  +++ykg  + e  pPHifa++ +a r++ ++  nq+++isGEsGAG
   KOO21511.1   5 VDDLAQLSSIDDSVVMATLKTRHEKDEIYTKNGAVLIAINPYKTIHLYDDGKLAQYKGSMSLESePPHIFAVSATAHRAMISNGVNQALVISGESGAG 102
                  69********************************************************987665289******************************* PP

                  HHHHHHHHHHHHHHHSSSSSCTCTTHHHHHHHHHHHHHHHHHEEEE CS
  Myosin_head  98 KteatKkvlqylasvaeskekveeeeleekilqsnPilEafGnAkt 143
                  Kte+++ +lqyl +v++ ++      leek+ +s Pi EafG Akt
   KOO21511.1 103 KTESARFILQYLRYVSNASH-----GLEEKVYKSQPITEAFGCAKT 143
                  ***************99888.....79******************9 PP

  == domain 2  score: 441.7 bits;  conditional E-value: 2.6e-135
                  EEEEEEECE-GGGGT---TT--SBHHHHHHHHCSTHHHHHHTT--..TCCGSTTTTTTSSSSBTTS-HHHHHHHHHHHHHHHT--HHHHHHHHHHHHH CS
  Myosin_head 168 gakietYLLEksRvvkqakeERnyHiFYqllagaseeekkelkle..dvkdyaylsqsgeltvdgiddseefketkkaldilglseeeqkeifrivaa 263
                  ga+++tYLLEksR+ +  ++ER+yHiFY+ll g+s+ e k ++l+  d k+y+yl++     v++  d++ + e+k+al+  ++s+ eqke ++++a+
   KOO21511.1 144 GASLSTYLLEKSRITHIGNGERAYHIFYELLRGMSAAELKGIQLSssDSKSYSYLKH--GDPVPAKHDAHGLAELKEALTAQNVSDAEQKEYWQLMAG 239
                  899***************************************999778999*****9..47999********************************** PP

                  HHHHCTSSEEEECTTSSEEESSHHH.HHHHHHHHTS-HHHHHHHHHSEEEEETTEEEEEE-BHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSS. CS
  Myosin_head 264 ilhlGniefkkeakdeqavledeek.lekaaellgvdaeelekalvkrriktgkevvskalnveqaevardalakaiyerlFdwlverinkslekkk. 359
                  ++ lGn++f  ++++++ +l+++ + l+ a ++lg++  ++ kal+kr+ik+g e+v + l++  a+  rdal+kaiy++lFd+l+ +in++l + + 
   KOO21511.1 240 VMLLGNVTFDPAKTESAQILSSSMQyLKDAEQVLGLQPDSVGKALTKRKIKAGAEFVDQDLKLDAANDGRDALSKAIYSKLFDYLIVQINQALAAGEe 337
                  **********99999888777776669******************************************************************99886 PP

                  ...-S-SEEEEEEEEE-B---SSB-HHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHTTSSGCGS-GGGCCHHHHHHHHSSSTSHHHHHHHHHTSTTS- CS
  Myosin_head 360 ...eekksfiGvLDiaGFEifeknsFEqlcinyvnEkLqqlFnelvlklEqeeYvrEgiewkfidfgldnqaiidLiekkplGilslLdeecllpkat 454
                     e+k+s+iGv+Di+GFE+fe+ns Eqlcin++nEkLq lF  +v+ +  + Y+ +gi+ ++i++ +dn+a i + e  ++G+ +lL eec++pk++
   KOO21511.1 338 vidESKASIIGVVDIFGFEVFEVNSLEQLCINFTNEKLQALFTATVFEQTLQAYKADGIDADEITY-VDNKALIAIFEVPNTGLWNLLSEECMVPKGS 434
                  7767899***********************************************************.9***********99***************** PP

                  HHHHHHHHHHHHTTSTTEEETTSTTTTTEEEEEETTCEEEEE-TTHHHHHH----HHHHHHHHTSSSHHHHHHCCSHCHB--.........CSSSECC CS
  Myosin_head 455 detfleklvkafskhakfeksrlkkgeakFiikHyAgkveYevegfleKnkDtlnedlvellksskkkllaelfkeeekeakaeakksekkkkkkkkk 552
                  d+ f+ekl++a +k + ++  + + +++ F ++H+Ag+v+Y+++++l+KnkD+l+ dlv l++ s++++l++lf++++k        ++  k +k k+
   KOO21511.1 435 DKGFTEKLHDAQAKGSALSIVKGASRSDGFQVEHFAGRVTYKTTNWLDKNKDPLSGDLVILMQFSNNSVLKRLFEDTSK-------PEAGGKGAKFKS 525
                  ******************99999999**************************************************554.......344556667777 PP

                  CCCSBHHHHHHHHHHHHHHHHCTSEEEEEEEE-SSSS--TT---HHHHHHHHHHTTHHHHHHHHHHSSSEEEEHHHHHHHHGGGSTTSS-SS.SSSHH CS
  Myosin_head 553 kkfktvgskfkeslaeLmktlestnphfvRCikpnekkkakkldeslvleqlrclGvlegirirraGfpnRitfeefvqrYkllakkelkkllkedak 650
                  +kfk v  +f+++l++L + l++ + hf+RC kpn++k+a  +des+v +ql+++Gvl+++r++r G+p R+t++ef + +  +ak    +  + + +
   KOO21511.1 526 TKFKGVVDTFRTQLTSLYDVLQASQLHFIRCFKPNDRKSADVWDESTVSRQLHTSGVLDALRVARTGYPDRMTYAEFASYFGDVAKIPRGD--TRSPR 621
                  78*****************************************************************************999998876544..58899 PP

                  HHHHHHHHHTTS-GCGEEECSSEEEE CS
  Myosin_head 651 kaveailkeleldkeeykiGktKiFf 676
                  + + ai  +++++ ++ k+G+ +iF+
   KOO21511.1 622 EKTAAICANMQVTPKQHKLGRERIFM 647
                  9999*********************7 PP

  == domain 3  score: -5.9 bits;  conditional E-value: 7.1
                  ECTTSSEEESSHHHHHHHHHHHTS-HHHHHHHHHSEEEEETTEEEEEE-BHHHHHHHHH CS
  Myosin_head 275 eakdeqavledeeklekaaellgvdaeelekalvkrriktgkevvskalnveqaevard 333
                  ++++++a  +++++++k a+l++ d++ +e+a   ++ ++++  ++ ++n  qae    
   KOO21511.1 841 AESKAEADAKAKAEADKKAALMNADKAAVERAKK-EKEEAERAAIQAEQNAIQAEEELR 898
                  344555667777789999*********9999965.455788899999999999986554 PP

>> Tub  Tub family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.7       2.9   4.8e+03      99     120 ..     855     891 ..     783     915 .. 0.59
   2 !  153.4   0.0   5.3e-48   8.6e-45       3     241 .]    1006    1238 ..    1004    1238 .. 0.85

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 2.9
         Tub  99 a...............kvkkekvrkelaavvYelnvl 120
                 a               ++kkek + e aa++ e+n +
  KOO21511.1 855 AdkkaalmnadkaaveRAKKEKEEAERAAIQAEQNAI 891
                 0333333333333333444444455555555555544 PP

  == domain 2  score: 153.4 bits;  conditional E-value: 5.3e-48
         Tub    3 gprdgliqcfikRdksgkkltstYhLylel..ekgkfLlaarkrrrsttseYlisldaedlsrdsesyiGklrsnflgtkftlydkgvspkksaake 97  
                     ++++qc++ R+ks +  +s++ +y++   +k+ +  +++k++      Y+isld++ + + +e++iG+l+ +   +++tlyd g  p +++a  
  KOO21511.1 1006 SCTQRPVQCYVLRTKS-RLGSSKFDFYMSIsaSKDMYCFTGKKSS----GVYVISLDQDGT-KAGENIIGNLKVDKKAMEYTLYDGGAAPGDKKA-- 1094
                  556789**********.6667788888887424444444444443....46*******865.8889*********************88887765.. PP

         Tub   98 sakvkkekvrkelaavvYelnvlgtrgprkmkvlipsie....kkvevspedeeeslqeetkkeeesdllvlknksprwneqlqayvLnFrgRvtva 190 
                      + +++r+el++v++  n l+ r+p +m+v++p+++    +++   + + +++l+e+ k  + sd +++kn++p+wne++q y L+FrgR+t a
  KOO21511.1 1095 ----AGKELRRELMHVHFI-NSLRNRNPGAMEVAMPAVDadgvAALFQPQVEGKDTLEERIKMPKPSDATIFKNREPKWNEETQIYQLDFRGRATHA 1186
                  ....45779*********8.88888*************8777544444455788889999999999******************************* PP

         Tub  191 SvKNfqLvaa.edeekvilqfGkvgkdvFtmDyryPlsalqAFaiclssfdt 241 
                  S KN+qL+ +   e++  + +Gkv++++F++D+++P+sa+qAFa +l  fd+
  KOO21511.1 1187 SCKNIQLTYKgGGENDAQMLMGKVDENKFNVDFNFPFSAMQAFAFSLVIFDN 1238
                  *******9995556788899****************************9996 PP

>> DUF3527  Domain of unknown function (DUF3527)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.7   0.0   1.6e-07   0.00025     294     345 ..    1182    1233 ..    1170    1238 .. 0.90

  Alignments for each domain:
  == domain 1  score: 20.7 bits;  conditional E-value: 1.6e-07
     DUF3527  294 aeleeekksleLfvqGskekePalslvnveeglYlvdfhakLSaLQaFSiav 345 
                  + ++ ++k ++L  +G  e+  ++ + +v e ++ vdf+  +Sa+QaF+ ++
  KOO21511.1 1182 RATHASCKNIQLTYKGGGENDAQMLMGKVDENKFNVDFNFPFSAMQAFAFSL 1233
                  567889******************************************9766 PP

>> WW  WW domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.5   0.1   9.8e-07    0.0016       2      25 ..     949     971 ..     948     973 .. 0.96

  Alignments for each domain:
  == domain 1  score: 18.5 bits;  conditional E-value: 9.8e-07
                 -TTEEEEE-TTTT-EEEEETTT-- CS
          WW   2 PpGWeeqwdpdsGrvYYyNheTge 25 
                 P+GW ++ +p+ G  YY+++ T++
  KOO21511.1 949 PEGWDQAESPN-GDMYYIHTITQQ 971
                 9**********.**********97 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0   6.7e-05      0.11       6      37 ..      91     122 ..      87     182 .. 0.76

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 6.7e-05
      AAA_22   6 gilvvtGesGtGKTtllrrlleqldeeakaee 37 
                 + lv+ GesG+GKT ++r +l+ l  +++a +
  KOO21511.1  91 QALVISGESGAGKTESARFILQYLRYVSNASH 122
                 689***************99988766555555 PP

>> Caldesmon  Caldesmon
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6  31.2   0.00011      0.18       8     220 ..     679     905 ..     676     950 .. 0.54

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00011
   Caldesmon   8 arErrrrarqerlrsreseepssqsdslvetnshrsevteeaselkssgeegddedqalldrlakreerrqrrlkealerqkeldaeaaease.....e 101
                 ar   r+ r+ rl+ ++ +e+++  ++ ++  +    ++    +l ++g+++ d+ +a l rl+++e +r    +  ++    +d++a  a        
  KOO21511.1 679 ARKLARQLREIRLKAQKAMETAAAGTDIPALAAAIAAAKSAGVHLAPKGKAAVDKAEATLARLKQEEAERLAATQALEKAMAGFDMAALAAAIamaskV 777
                 56667888999999888888888889999999989899999999********************99999998887766666778888777666554331 PP

   Caldesmon 102 r.........slaeekeeaeeeekssrrkeryrdeeeeeeeteekekereekkqaeskeeeeeekaeaeeeaeeeeeekkvdesedkevseelkdeesk 191
                 +          +++  +  eee+  ++++er++++  e++ +eek   +e kk++e++e+  +++++ae++a+ + e +k+ +  ++ +    +++++k
  KOO21511.1 778 KgvdavlmqkAQTAHAKLVEEERLRKEEEERLKKMAAEQKAAEEKRLAEERKKRQEEEENRRKAESKAEADAKAKAEADKKAALMNADKAAVERAKKEK 876
                 143312211122222222333333333333333333333333333322222222222222222222222222222222222222222222222222333 PP

   Caldesmon 192 qvleekkaieeskkqngaeeeveaalkkt 220
                 +  e+     e+++ +++ee   +a+k++
  KOO21511.1 877 EEAERAAIQAEQNAIQAEEELRARAIKEL 905
                 33333333333333333333322333332 PP

>> IQ  IQ calmodulin-binding motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   1.0    0.0004      0.64       4      19 ..     667     682 ..     664     684 .. 0.89

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.0004
                 HHHHHHHHHHHHHHHH CS
          IQ   4 aikIQaawRGylaRkr 19 
                 +ik+Qa  R+++aRk 
  KOO21511.1 667 VIKLQAGARAMKARKL 682
                 8*************96 PP

>> Tugs  Tethering Ubl4a to BAGS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.6   0.3      0.41   6.7e+02      17      33 ..     734     750 ..     731     753 .. 0.81
   2 ?   10.0   0.6   0.00046      0.75       4      36 ..     780     813 ..     778     816 .. 0.86

  Alignments for each domain:
  == domain 1  score: 0.6 bits;  conditional E-value: 0.41
        Tugs  17 aekVleqLrkeyersLr 33 
                 ae+ l +L++e  ++L 
  KOO21511.1 734 AEATLARLKQEEAERLA 750
                 78889999999999885 PP

  == domain 2  score: 10.0 bits;  conditional E-value: 0.00046
        Tugs   4 laqvLakHFspqDaekVl.eqLrkeyersLrrls 36 
                 ++ vL +  +++ a+ V  e+Lrke e++L+++ 
  KOO21511.1 780 VDAVLMQKAQTAHAKLVEeERLRKEEEERLKKMA 813
                 678999999999999997369***********96 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   0.00029      0.48      22      49 ..      87     115 ..      75     223 .. 0.83

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00029
      AAA_16  22 grp..elvllsGesGvGKsslvrellrale 49 
                 + +  +++++sGesG GK+  +r +l++l+
  KOO21511.1  87 N-GvnQALVISGESGAGKTESARFILQYLR 115
                 3.33589****************9998665 PP

>> TFIIA  Transcription factor IIA, alpha/beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.4  14.2    0.0011       1.8      95     301 ..     691     911 ..     616     980 .. 0.48

  Alignments for each domain:
  == domain 1  score: 8.4 bits;  conditional E-value: 0.0011
       TFIIA  95 ipagksvqsltanssaataatfslpaklepp.vqipagvtlqtasg......qlykvnv......qasgaqqiaaqplqqvvqqsqgsaaqssvaalqa 180
                  +a+k ++   a         +++pa          agv l +         +            q+++ + +a+q+l++  + +   aa +++ a+++
  KOO21511.1 691 LKAQKAMETAAA--------GTDIPALAAAIaAAKSAGVHLAPKGKaavdkaE-----AtlarlkQEEAERLAATQALEKA-MAGFDMAALAAAIAMAS 775
                 222222222222........122222211110122335555555443222111.....23344434444444455555555.43344444444444444 PP

       TFIIA 181 q.sqqaqalaepqqqlekq...qqq.qqqqqqqqqqqqvqqqqqeesqqaqqasqe.....qvagsqvessqtdgaedaleeespv.legelsaeeeag 268
                 + +   ++l+++ q+++++   +++ ++++++++++++++q+  ee++ a++ +++     +  +++++++ + +a+ ++++++ + ++++++a e+a+
  KOO21511.1 776 KvKGVDAVLMQKAQTAHAKlveEERlRKEEEERLKKMAAEQKAAEEKRLAEERKKRqeeeeNRRKAESKAEADAKAKAEADKKA-AlMNADKAAVERAK 873
                 433333334444443222245422323333333444444444444222222221111111111112222222222222222222.24566666666666 PP

       TFIIA 269 aqkeelsreeidrire.....ealkakelekeskkkkr 301
                 ++kee++r+ i++ ++     e+l+a+ +++ +++k +
  KOO21511.1 874 KEKEEAERAAIQAEQNaiqaeEELRARAIKELARRKIT 911
                 66666666666655222333344444444444444433 PP

>> CDC45  CDC45-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.3  19.7    0.0031         5     113     252 ..     798     940 ..     780     942 .. 0.44

  Alignments for each domain:
  == domain 1  score: 5.3 bits;  conditional E-value: 0.0031
       CDC45 113 eeeleeereayealeeeeesdeedeeeeeeddddeeeeeeeeedeedeeedeeeskkkrksksdeeee...sddddersrkrrrse..psakklrrqlk 206
                 ee+l++e+e  e+l+++  +++   ee+   +++++++eeee++++ e++ e +   k k+++d++ +    d+++ +++k++++e  ++a +++++  
  KOO21511.1 798 EERLRKEEE--ERLKKMAAEQKAA-EEKRLAEERKKRQEEEENRRKAESKAEAD--AKAKAEADKKAAlmnADKAAVERAKKEKEEaeRAAIQAEQNAI 891
                 334444333..3333333333211.11212222222222222222222222222..2222223333335433333333333333332233334444466 PP

       CDC45 207 kerrkyeavlekyysqgtsygesvsslmYsLaselgre...dndlLWlA 252
                 +++++ +a+  k  ++ ++  +s +s + + a  lg +   d d LW+A
  KOO21511.1 892 QAEEELRARAIKELARRKITFKSEASDVLEYAVYLGMDlniDLDFLWIA 940
                 6666667777777777777777777777777777775522377999998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1245 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2607  (0.145407); expected 358.6 (0.02)
Passed bias filter:                      789  (0.0440069); expected 358.6 (0.02)
Passed Vit filter:                       220  (0.0122706); expected 17.9 (0.001)
Passed Fwd filter:                        47  (0.00262145); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 1.54u 0.42s 00:00:01.96 Elapsed: 00:00:00.57
# Mc/sec: 6605.50
//
Query:       KOO21512.1  [L=463]
Description: calmodulin-like protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    7.5e-24   84.0   3.3    3.3e-14   53.1   0.4    3.7  4  EF-hand_7     EF-hand domain pair
    2.7e-21   73.6   6.3    1.1e-06   28.1   0.0    5.1  5  EF-hand_6     EF-hand domain
    1.1e-20   71.6   7.1    6.9e-06   25.3   0.0    5.4  5  EF-hand_1     EF hand
    4.3e-15   54.4   8.4    1.9e-05   23.9   0.1    4.9  5  EF-hand_5     EF hand
    9.6e-15   54.2   7.5    2.1e-08   33.9   0.9    4.1  4  EF-hand_8     EF-hand domain pair
    1.5e-06   28.4   0.1    0.00037   20.8   0.1    3.3  3  EF-hand_9     EF-hand domain
    0.00018   21.8   2.4      0.079   13.3   1.2    3.2  2  SPARC_Ca_bdg  Secreted protein acidic and rich in cysteine Ca
     0.0053   17.6   0.3       0.58   11.1   0.0    2.8  2  EF-hand_11    EF-hand domain
     0.0058   17.1  15.1     0.0058   17.1  15.1    2.4  2  APG6_N        Apg6 coiled-coil region
  ------ inclusion threshold ------
      0.022   15.0   1.8      0.022   15.0   1.8    2.5  2  JIP_LZII      JNK-interacting protein  leucine zipper II
      0.025   15.1   2.7      0.083   13.4   2.6    2.1  1  RusA          Endodeoxyribonuclease RusA
       0.16   10.8   7.7       0.29    9.9   7.7    1.3  1  Fmp27_WPPW    RNA pol II promoter Fmp27 protein domain
        0.6   10.1   8.4        4.1    7.4   0.9    3.9  4  EF-hand_4     Cytoskeletal-regulatory complex EF hand
        1.6    7.5   9.5        3.8    6.3   9.5    1.5  1  ALMT          Aluminium activated malate transporter
        2.1    9.1   9.2        1.8    9.4   2.5    3.1  3  Occludin_ELL  Occludin homology domain
          4    6.3   8.4        8.5    5.2   8.4    1.5  1  XRN_M         Xrn1 helical domain


Domain annotation for each model (and alignments):
>> EF-hand_7  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.1   0.1   7.9e-09   8.8e-06       9      71 .]      74     131 ..      64     131 .. 0.92
   2 ?    2.8   0.0      0.15   1.7e+02      48      70 ..     213     235 ..     173     236 .. 0.83
   3 ?    2.4   0.0       0.2   2.3e+02      51      70 ..     216     235 ..     209     315 .. 0.74
   4 !   53.1   0.4   2.9e-17   3.3e-14       2      68 ..     387     447 ..     386     449 .. 0.94

  Alignments for each domain:
  == domain 1  score: 26.1 bits;  conditional E-value: 7.9e-09
   EF-hand_7   9 kelDtdgdgyldkeellrllrkifqgagegsklsdeelellfkefDtdkdGvisfdEFlklyr 71 
                 ++ D  gdg + + el++++r+     + + k + +e+++lf+ +D+d+ G+i++ E+  ++r
  KOO21512.1  74 RKWDASGDGEIQPIELRQVVRN-----HLKIKADNKEIDALFNRLDSDGGGSIDLKEMGDAMR 131
                 67799****************9.....99999999**********************987775 PP

  == domain 2  score: 2.8 bits;  conditional E-value: 0.15
   EF-hand_7  48 llfkefDtdkdGvisfdEFlkly 70 
                 ++ + +D  k G +   EF+k+ 
  KOO21512.1 213 KVANSLDPQKAGIVEAKEFKKWA 235
                 89999***************996 PP

  == domain 3  score: 2.4 bits;  conditional E-value: 0.2
   EF-hand_7  51 kefDtdkdGvisfdEFlkly 70 
                 + +D  k G +   EF+k+ 
  KOO21512.1 216 NSLDPQKAGIVEAKEFKKWA 235
                 55666666666666666654 PP

  == domain 4  score: 53.1 bits;  conditional E-value: 2.9e-17
   EF-hand_7   2 eklkeaFkelDtdgdgyldkeellrllrkifqgagegsklsdeelellfkefDtdkdGvisfdEFlk 68 
                  +++ aF  +D+dgdg+l+++el+ +l       + +s+l+++ +e+l+kefD +++Gv+ fdEF+ 
  KOO21512.1 387 ARMRKAFAVFDVDGDGSLTVDELKAVLL------RGDSVLTEQDVEDLVKEFDANGNGVLEFDEFQP 447
                 578999******************9998......99*****************************96 PP

>> EF-hand_6  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.8   0.0   0.00034      0.38       5      27 ..      72      94 ..      69     100 .. 0.89
   2 !   18.7   0.5   9.9e-07    0.0011       1      27 [.     105     131 ..     105     134 .. 0.94
   3 ?   -1.3   0.0       2.6     3e+03      10      25 ..     219     234 ..     216     237 .. 0.77
   4 !   28.1   0.0     1e-09   1.1e-06       1      26 [.     388     413 ..     388     419 .. 0.92
   5 !   14.6   0.3   2.1e-05     0.023       3      24 ..     426     447 ..     424     453 .. 0.86

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00034
   EF-hand_6  5 aFklfDkdgdGkidaeElrkalr 27
                + +++D +gdG+i + Elr++ r
  KOO21512.1 72 LLRKWDASGDGEIQPIELRQVVR 94
                56899***************998 PP

  == domain 2  score: 18.7 bits;  conditional E-value: 9.9e-07
   EF-hand_6   1 elreaFklfDkdgdGkidaeElrkalr 27 
                 e++++F+ +D dg G+id +E+ +a+r
  KOO21512.1 105 EIDALFNRLDSDGGGSIDLKEMGDAMR 131
                 6789**********************9 PP

  == domain 3  score: -1.3 bits;  conditional E-value: 2.6
   EF-hand_6  10 DkdgdGkidaeElrka 25 
                 D  + G + a+E++k+
  KOO21512.1 219 DPQKAGIVEAKEFKKW 234
                 6666688999***997 PP

  == domain 4  score: 28.1 bits;  conditional E-value: 1e-09
   EF-hand_6   1 elreaFklfDkdgdGkidaeElrkal 26 
                 ++r+aF  fD+dgdG+++ +El+++l
  KOO21512.1 388 RMRKAFAVFDVDGDGSLTVDELKAVL 413
                 69**********************98 PP

  == domain 5  score: 14.6 bits;  conditional E-value: 2.1e-05
   EF-hand_6   3 reaFklfDkdgdGkidaeElrk 24 
                 +++ k+fD +g+G + ++E++ 
  KOO21512.1 426 EDLVKEFDANGNGVLEFDEFQP 447
                 68899***************95 PP

>> EF-hand_1  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.6   0.0    0.0026         3       4      27 ..      71      94 ..      69      96 .. 0.88
   2 !   17.0   0.9   2.6e-06    0.0029       1      27 [.     105     131 ..     105     133 .. 0.96
   3 ?    0.8   0.0       0.4   4.5e+02       9      27 ..     218     236 ..     213     238 .. 0.82
   4 !   25.3   0.0   6.1e-09   6.9e-06       2      26 ..     389     413 ..     388     415 .. 0.93
   5 !   18.9   0.7   6.4e-07   0.00072       2      23 ..     425     446 ..     424     451 .. 0.89

  Alignments for each domain:
  == domain 1  score: 7.6 bits;  conditional E-value: 0.0026
                HHHHHHTTTSSSEEEHHHHHHHHH CS
   EF-hand_1  4 eiFrefDkDgdGkIdfeEfkellk 27
                ++ r+ D  gdG I   E++++++
  KOO21512.1 71 DLLRKWDASGDGEIQPIELRQVVR 94
                567999***************997 PP

  == domain 2  score: 17.0 bits;  conditional E-value: 2.6e-06
                 HHHHHHHHHTTTSSSEEEHHHHHHHHH CS
   EF-hand_1   1 elkeiFrefDkDgdGkIdfeEfkellk 27 
                 e++ +F+ +D Dg G Id++E+ ++++
  KOO21512.1 105 EIDALFNRLDSDGGGSIDLKEMGDAMR 131
                 799**********************97 PP

  == domain 3  score: 0.8 bits;  conditional E-value: 0.4
                 HTTTSSSEEEHHHHHHHHH CS
   EF-hand_1   9 fDkDgdGkIdfeEfkellk 27 
                 +D  + G ++ +Efk++ k
  KOO21512.1 218 LDPQKAGIVEAKEFKKWAK 236
                 67778899*******9876 PP

  == domain 4  score: 25.3 bits;  conditional E-value: 6.1e-09
                 HHHHHHHHTTTSSSEEEHHHHHHHH CS
   EF-hand_1   2 lkeiFrefDkDgdGkIdfeEfkell 26 
                 ++++F++fD+DgdG ++ +E+k++l
  KOO21512.1 389 MRKAFAVFDVDGDGSLTVDELKAVL 413
                 689*******************987 PP

  == domain 5  score: 18.9 bits;  conditional E-value: 6.4e-07
                 HHHHHHHHTTTSSSEEEHHHHH CS
   EF-hand_1   2 lkeiFrefDkDgdGkIdfeEfk 23 
                 ++++ +efD +g+G ++f+Ef+
  KOO21512.1 425 VEDLVKEFDANGNGVLEFDEFQ 446
                 78889****************7 PP

>> EF-hand_5  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.6   0.0   0.00056      0.63       3      25 .]      71      93 ..      69      93 .. 0.89
   2 !    9.6   0.4   0.00057      0.64       1      21 [.     106     126 ..     106     131 .. 0.90
   3 ?   -3.1   0.0       5.9   6.6e+03      14      23 ..     224     233 ..     224     233 .. 0.83
   4 !   23.9   0.1   1.7e-08   1.9e-05       2      24 ..     390     412 ..     389     414 .. 0.90
   5 !   12.9   0.1   5.1e-05     0.057       6      22 ..     430     446 ..     425     448 .. 0.91

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 0.00056
                HHHHHH-SS-SSCE-HHHHHHHH CS
   EF-hand_5  3 dtFqaiDlNgDGkIskeELktlv 25
                d++++ D+ gDG I + EL+++v
  KOO21512.1 71 DLLRKWDASGDGEIQPIELRQVV 93
                688899**************986 PP

  == domain 2  score: 9.6 bits;  conditional E-value: 0.00057
                 HHHHHHHH-SS-SSCE-HHHH CS
   EF-hand_5   1 lkdtFqaiDlNgDGkIskeEL 21 
                 ++++F+++D +g G I+  E 
  KOO21512.1 106 IDALFNRLDSDGGGSIDLKEM 126
                 6789**************997 PP

  == domain 3  score: -3.1 bits;  conditional E-value: 5.9
                 SCE-HHHHHH CS
   EF-hand_5  14 GkIskeELkt 23 
                 G + + E+k+
  KOO21512.1 224 GIVEAKEFKK 233
                 788999*985 PP

  == domain 4  score: 23.9 bits;  conditional E-value: 1.7e-08
                 HHHHHHH-SS-SSCE-HHHHHHH CS
   EF-hand_5   2 kdtFqaiDlNgDGkIskeELktl 24 
                 +++F  +D++gDG ++++ELk++
  KOO21512.1 390 RKAFAVFDVDGDGSLTVDELKAV 412
                 678******************96 PP

  == domain 5  score: 12.9 bits;  conditional E-value: 5.1e-05
                 HHH-SS-SSCE-HHHHH CS
   EF-hand_5   6 qaiDlNgDGkIskeELk 22 
                 +++D+Ng G + ++E++
  KOO21512.1 430 KEFDANGNGVLEFDEFQ 446
                 68**************7 PP

>> EF-hand_8  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.8   0.1   2.3e-07   0.00025       2      47 ..      81     125 ..      63     130 .. 0.93
   2 ?   -0.9   0.0       1.4   1.5e+03      13      48 ..     194     231 ..     191     233 .. 0.64
   3 !    8.5   0.0    0.0016       1.8      32      53 ..     393     414 ..     387     416 .. 0.88
   4 !   33.9   0.9   1.8e-11   2.1e-08       2      51 ..     401     448 ..     400     451 .. 0.87

  Alignments for each domain:
  == domain 1  score: 20.8 bits;  conditional E-value: 2.3e-07
   EF-hand_8   2 kgkItreelrril.rilglkkglseeevdilfrefDtdgdGkisfeE 47 
                 +g+I + elr  + + l++k    ++e+d+lf+++D dg G i+++E
  KOO21512.1  81 DGEIQPIELRQVVrNHLKIK--ADNKEIDALFNRLDSDGGGSIDLKE 125
                 78999999999997877777..***********************99 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 1.4
   EF-hand_8  13 il.rilglkkglseee.vdilfrefDtdgdGkisfeEF 48 
                 i+ +i+gl+ +++e++    + + +D  + G++  +EF
  KOO21512.1 194 IAmAIVGLATSTNESDaKSKVANSLDPQKAGIVEAKEF 231
                 55599999977777774455666666666666666666 PP

  == domain 3  score: 8.5 bits;  conditional E-value: 0.0016
   EF-hand_8  32 frefDtdgdGkisfeEFcvlle 53 
                 f  fD dgdG ++ +E  ++l 
  KOO21512.1 393 FAVFDVDGDGSLTVDELKAVLL 414
                 668*************998876 PP

  == domain 4  score: 33.9 bits;  conditional E-value: 1.8e-11
   EF-hand_8   2 kgkItreelrril.rilglkk.glseeevdilfrefDtdgdGkisfeEFcvl 51 
                 +g++t++el+  l r  g  +  l+e++v++l++efD +g+G++ f+EF  l
  KOO21512.1 401 DGSLTVDELKAVLlR--G--DsVLTEQDVEDLVKEFDANGNGVLEFDEFQPL 448
                 89*********6644..4..467**************************655 PP

>> EF-hand_9  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.0   0.0      0.24   2.7e+02      31      62 ..     100     130 ..      76     132 .. 0.76
   2 ?    1.1   0.0      0.46   5.1e+02      32      59 ..     205     232 ..     197     238 .. 0.66
   3 !   20.8   0.1   3.3e-07   0.00037       3      59 ..     392     446 ..     390     450 .. 0.92

  Alignments for each domain:
  == domain 1  score: 2.0 bits;  conditional E-value: 0.24
   EF-hand_9  31 dpeeseLeelakelDPdgedasvdldtflrvm 62 
                 +  + e++ l + lD dg  +s+dl      m
  KOO21512.1 100 KADNKEIDALFNRLDSDGG-GSIDLKEMGDAM 130
                 455679999*********9.999998766555 PP

  == domain 2  score: 1.1 bits;  conditional E-value: 0.46
   EF-hand_9  32 pees.eLeelakelDPdgedasvdldtfl 59 
                 ++es +  + a++lDP+   + v+   f+
  KOO21512.1 205 TNESdAKSKVANSLDPQKA-GIVEAKEFK 232
                 5555444556778888777.666666655 PP

  == domain 3  score: 20.8 bits;  conditional E-value: 3.3e-07
   EF-hand_9   3 vFevcDtqktGrVpvsrlidyLravtaqdpeeseLeelakelDPdgedasvdldtfl 59 
                  F v+D++  G  +v +l+++L    +   +e ++e+l ke+D +g+ + +++d f+
  KOO21512.1 392 AFAVFDVDGDGSLTVDELKAVLLRGDS-VLTEQDVEDLVKEFDANGN-GVLEFDEFQ 446
                 59******************9987777.899****************.********8 PP

>> SPARC_Ca_bdg  Secreted protein acidic and rich in cysteine Ca binding region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.1   0.0     0.012        14      48     110 ..      61     126 ..      27     129 .. 0.76
   2 !   13.3   1.2     7e-05     0.079      24     110 ..     357     445 ..     274     447 .. 0.88

  Alignments for each domain:
  == domain 1  score: 6.1 bits;  conditional E-value: 0.012
  SPARC_Ca_bdg  48 nlkeckepvawkFsklDtnsdkvlsksELaplra...plvklehCikpflescDadkdkkislkEw 110
                     ++ k +va    k+D   d+ ++  EL+++     ++   ++ i++++++ D+d  ++i+lkE 
    KOO21512.1  61 AIQKQKMSVADLLRKWDASGDGEIQPIELRQVVRnhlKIKADNKEIDALFNRLDSDGGGSIDLKEM 126
                   5566677777778899*************99854111445567889*****************997 PP

  == domain 2  score: 13.3 bits;  conditional E-value: 7e-05
  SPARC_Ca_bdg  24 leelkereeekehleelekkeeeknlkeckepvawkFsklDtnsdkvlsksELap..lraplvklehCikpflescDadkdkkislkEw 110
                   +e++ +++ e++ +++ ++ +  + +k+ +  ++  F  +D++ d++l+  EL++  lr + v +e+ ++ ++++ Da+ ++ ++  E+
    KOO21512.1 357 HEQSFNNRVEMKRKAAAKQGQSASDKKAAEARMRKAFAVFDVDGDGSLTVDELKAvlLRGDSVLTEQDVEDLVKEFDANGNGVLEFDEF 445
                   555556666666666666777777778888889999*****************983357788999*******************99998 PP

>> EF-hand_11  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.8   0.0     0.096   1.1e+02      30      94 ..      77     142 ..      56     153 .. 0.70
   2 !   11.1   0.0   0.00051      0.58      24      83 ..     391     450 ..     359     463 .] 0.85

  Alignments for each domain:
  == domain 1  score: 3.8 bits;  conditional E-value: 0.096
                 -TT-SSEE-HHHHHHHHHHHT----HH.HHHHHHHTS-B-TTS-EEHHHHHHHHCS-.-------- CS
  EF-hand_11  30 dtlksntvsreefraictrrvqiltde.qfdrlwselpvnakgrlkyqdflsklsiervaatpmaa 94 
                 d+     +   e+r ++  +++i +d+ ++d l++ l  +  g +  +++   +   + + +  aa
  KOO21512.1  77 DASGDGEIQPIELRQVVRNHLKIKADNkEIDALFNRLDSDGGGSIDLKEMGDAMRFFQQSVATAAA 142
                 5555556677799***********997259*******99999998887776555544333333344 PP

  == domain 2  score: 11.1 bits;  conditional E-value: 0.00051
                 HHHHHH-TT-SSEE-HHHHHHHHHHHT----HHHHHHHHHTS-B-TTS-EEHHHHHHHHC CS
  EF-hand_11  24 qefenfdtlksntvsreefraictrrvqiltdeqfdrlwselpvnakgrlkyqdflskls 83 
                 + f  fd     +++ +e++a+  r   +lt+++ + l +e+  n +g l +++f   + 
  KOO21512.1 391 KAFAVFDVDGDGSLTVDELKAVLLRGDSVLTEQDVEDLVKEFDANGNGVLEFDEFQPLFD 450
                 568889999999999***************************************976554 PP

>> APG6_N  Apg6 coiled-coil region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.2         4   4.5e+03      61      78 ..     142     159 ..     122     177 .. 0.49
   2 !   17.1  15.1   5.2e-06    0.0058      44     130 ..     266     369 ..     247     372 .. 0.76

  Alignments for each domain:
  == domain 1  score: -1.9 bits;  conditional E-value: 4
      APG6_N  61 keeeelleeLkelekere 78 
                 ++e++ ++  kel ++ +
  KOO21512.1 142 ADEAKQMAIAKELRDQAA 159
                 333333333333333322 PP

  == domain 2  score: 17.1 bits;  conditional E-value: 5.2e-06
      APG6_N  44 k...............qdeeleeleeeleklekeeeelleeLkelekereeleae..laaleeelealeeeeerfwreynelqlelleleeeldsleaq 125
                                 + +e e+  +e+ekl+ke ++ ++ +ke++++++++++e   aal++e+e+  e e+++  +  +++  l+ + +  +s +++
  KOO21512.1 266 LdakmgfrklwdrveeTIKESEAVIKEFEKLQKETKKVQKAIKEMQAADKAIAQEkeAAALKAEEERQLEAEAKKAAKAAAKAAALEAKRNHEQSFNNR 364
                 24555555555555555567899***************************9976511677889999999999999999999*****************9 PP

      APG6_N 126 yehaq 130
                 +e  +
  KOO21512.1 365 VEMKR 369
                 99765 PP

>> JIP_LZII  JNK-interacting protein  leucine zipper II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.0   1.8   1.9e-05     0.022      31      67 ..     275     311 ..     272     315 .. 0.93
   2 ?   -2.9   0.4       7.4   8.3e+03      41      52 ..     330     341 ..     320     352 .. 0.48

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 1.9e-05
    JIP_LZII  31 LIarvdeLtsereiLreEleslqkakerlesrikelE 67 
                 L  rv+e  +e e++ +E+e+lqk+ +++++ ike++
  KOO21512.1 275 LWDRVEETIKESEAVIKEFEKLQKETKKVQKAIKEMQ 311
                 778********************************97 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 7.4
    JIP_LZII  41 ereiLreElesl 52 
                 e+  L+ E ++ 
  KOO21512.1 330 EERQLEAEAKKA 341
                 222344444333 PP

>> RusA  Endodeoxyribonuclease RusA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   2.6   7.4e-05     0.083      18     111 ..     332     427 ..     296     439 .. 0.84

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 7.4e-05
                 SEEE-HHHHHHHHHHHHHHHHTT-..TT-B-S-EEEEEEEE-SS.................SS---HHHHHHHHHHHHHTTSBS-GGGEEEEEEE- CS
        RusA  18 rtytpkktkayeeevkaylekqyekdkeplegplkvevtlyfpipkslskkkkqealek..tkkpDiDNlaKavlDalngivwkDDsqvvdlivek 111
                 r ++ +  ka ++++ka++ +++++++++++ +++++ ++  ++ +s s kk +ea  +      D+D    +++D l++++ + Ds++++  ve 
  KOO21512.1 332 RQLEAEAKKAAKAAAKAAALEAKRNHEQSFNNRVEMKRKAAAKQGQSASDKKAAEARMRkaFAVFDVDGDGSLTVDELKAVLLRGDSVLTEQDVED 427
                 55667778889999999999999999********************99777766665556777899999999***************999888873 PP

>> Fmp27_WPPW  RNA pol II promoter Fmp27 protein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   7.7   0.00026      0.29     200     281 ..     282     364 ..     268     367 .. 0.61

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.00026
  Fmp27_WPPW 200 ksekedeelkeeieelekeikelkeklefletlledlkeseesse..eeeskskelsaastsesfseldelasseesaseFknR 281
                 + ++ +e++ +e+e+l+ke+k+++++++ ++++ + + +++e+++   ee+++ e++a++ ++  +++  l+ + +++++F+nR
  KOO21512.1 282 TIKE-SEAVIKEFEKLQKETKKVQKAIKEMQAADKAIAQEKEAAAlkAEEERQLEAEAKKAAKAAAKAAALEAKRNHEQSFNNR 364
                 2222.45566666666666666666666666666666666665554433333334444444444445555999**********9 PP

>> EF-hand_4  Cytoskeletal-regulatory complex EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.2   0.0     0.074        83      39      79 ..     100     140 ..      78     161 .. 0.78
   2 ?   -0.7   0.2       1.2   1.3e+03       6      38 ..     297     329 ..     292     339 .. 0.82
   3 ?    4.9   0.0     0.023        25      37      65 ..     381     409 ..     352     415 .. 0.78
   4 ?    7.4   0.9    0.0036       4.1      22      78 ..     400     454 ..     385     462 .. 0.74

  Alignments for each domain:
  == domain 1  score: 3.2 bits;  conditional E-value: 0.074
   EF-hand_4  39 kleedklekiwdladidedgkldfeefciamrlifdlvnge 79 
                 k ++++++ +++  d d  g++d++e+  amr+    v   
  KOO21512.1 100 KADNKEIDALFNRLDSDGGGSIDLKEMGDAMRFFQQSVATA 140
                 44566788999999999***************877666555 PP

  == domain 2  score: -0.7 bits;  conditional E-value: 1.2
   EF-hand_4   6 eleikkyweifsglkpednkltgdkvapvlkns 38 
                 + e kk  +  + ++  d+ ++++k a+ lk  
  KOO21512.1 297 QKETKKVQKAIKEMQAADKAIAQEKEAAALKAE 329
                 56889999999999999******9999999875 PP

  == domain 3  score: 4.9 bits;  conditional E-value: 0.023
   EF-hand_4  37 nskleedklekiwdladidedgkldfeef 65 
                 + k  e ++ k + + d+d dg+l  +e+
  KOO21512.1 381 DKKAAEARMRKAFAVFDVDGDGSLTVDEL 409
                 45667889999**************9997 PP

  == domain 4  score: 7.4 bits;  conditional E-value: 0.0036
   EF-hand_4  22 ednkltgdkvapvlk..nskleedklekiwdladidedgkldfeefciamrlifdlvng 78 
                  d  lt d++ +vl   +s l+e+ +e + +  d + +g l+f+ef      +fd++n+
  KOO21512.1 400 GDGSLTVDELKAVLLrgDSVLTEQDVEDLVKEFDANGNGVLEFDEFQ----PLFDVLNE 454
                 466777777777764237999999****99999************95....45777766 PP

>> ALMT  Aluminium activated malate transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.3   9.5    0.0034       3.8     298     402 ..     278     386 ..     260     408 .. 0.53

  Alignments for each domain:
  == domain 1  score: 6.3 bits;  conditional E-value: 0.0034
        ALMT 298 elqrvslesakvlrelaesvkkmkklskveellkevkvaaeeLqs..kldskskLlvnsekweaakkkekaeeveekkeeekeseskkeea..eaveea 392
                  +++  +es  v++e+++  k++kk +k+ + ++ + +a+ + ++  +l+ + + ++++e ++aak ++ka + e k ++e++ +++ e +  +a ++ 
  KOO21512.1 278 RVEETIKESEAVIKEFEKLQKETKKVQKAIKEMQAADKAIAQEKEaaALKAEEERQLEAEAKKAAKAAAKAAALEAKRNHEQSFNNRVEMKrkAAAKQG 376
                 444555566666666666666666666655555555555544443114566666666666655555555555444444444433333333211223333 PP

        ALMT 393 eseseksllk 402
                 +s+s+k++ +
  KOO21512.1 377 QSASDKKAAE 386
                 3333333322 PP

>> Occludin_ELL  Occludin homology domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.8   0.0      0.37   4.1e+02      36      95 ..     128     184 ..     120     187 .. 0.66
   2 ?    9.4   2.5    0.0016       1.8      17      65 ..     272     320 ..     268     333 .. 0.86
   3 ?   -1.2   0.7       3.1   3.4e+03      31      67 ..     334     370 ..     327     392 .. 0.53

  Alignments for each domain:
  == domain 1  score: 1.8 bits;  conditional E-value: 0.37
  Occludin_ELL  36 kkfseLerelkelkegskeykkieeeilqeykklkkdpeyqekkkrceyLkekLshiKkl 95 
                   + ++ +++ + +++ ++ +   i++e+ ++ + +   ++  ++ +r+e+L+ k + iK+ 
    KOO21512.1 128 DAMRFFQQSVATAAADEAKQMAIAKELRDQAAMI---SDCAKNTARVEELRVKVNGIKSG 184
                   4555555555555555556666666644444444...78889999999999999999975 PP

  == domain 2  score: 9.4 bits;  conditional E-value: 0.0016
  Occludin_ELL  17 FnkeYkeYkelhaeleevskkfseLerelkelkegskeykkieeeilqe 65 
                   F+k +++  e  +e e+v k+f++L++e+k+ ++  ke++ + + i qe
    KOO21512.1 272 FRKLWDRVEETIKESEAVIKEFEKLQKETKKVQKAIKEMQAADKAIAQE 320
                   777778888889999**************************99999887 PP

  == domain 3  score: -1.2 bits;  conditional E-value: 3.1
  Occludin_ELL  31 leevskkfseLerelkelkegskeykkieeeilqeyk 67 
                   le+ +kk ++  ++  +l+ +++++++ ++++  + k
    KOO21512.1 334 LEAEAKKAAKAAAKAAALEAKRNHEQSFNNRVEMKRK 370
                   4445555555555555555555555555555443333 PP

>> XRN_M  Xrn1 helical domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.2   8.4    0.0076       8.5      61     136 ..     299     369 ..     248     406 .. 0.48

  Alignments for each domain:
  == domain 1  score: 5.2 bits;  conditional E-value: 0.0076
       XRN_M  61 kldrveklvslvgkveekifrkrkeredrkekklakeeeaskedaaneeaavaeeklseskvaksaeaeaeaeaea 136
                 + ++v+k ++++++++++i +++++   ++e++++ e+ea+k+++a+++aa  e+k ++++     + +++ e++ 
  KOO21512.1 299 ETKKVQKAIKEMQAADKAIAQEKEAAALKAEEERQLEAEAKKAAKAAAKAAALEAKRNHEQ-----SFNNRVEMKR 369
                 2344555555555555555554444444333333333333333333333322222211111.....1111111111 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (463 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      3146  (0.17547); expected 358.6 (0.02)
Passed bias filter:                      881  (0.0491383); expected 358.6 (0.02)
Passed Vit filter:                       161  (0.00897987); expected 17.9 (0.001)
Passed Fwd filter:                        39  (0.00217525); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              16  [number of targets reported over threshold]
# CPU time: 0.89u 0.35s 00:00:01.24 Elapsed: 00:00:00.50
# Mc/sec: 2790.42
//
Query:       KOO21513.1  [L=223]
Description: hypothetical protein Ctob_003488 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (223 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       286  (0.0159518); expected 358.6 (0.02)
Passed bias filter:                      230  (0.0128284); expected 358.6 (0.02)
Passed Vit filter:                        12  (0.000669307); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.40u 0.26s 00:00:00.66 Elapsed: 00:00:00.42
# Mc/sec: 1606.87
//
Query:       KOO21514.1  [L=259]
Description: sel1l protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.3e-11   43.7   0.0    3.9e-11   42.9   0.0    1.3  1  U-box     U-box domain
    5.9e-09   36.3   9.5    3.6e-05   24.3   1.0    3.6  3  Sel1      Sel1 repeat
    0.00095   18.9   0.0     0.0017   18.1   0.0    1.3  1  zf-Nse    Zinc-finger of the MIZ type in Nse subunit
  ------ inclusion threshold ------
      0.019   15.1   0.0      0.042   14.0   0.0    1.6  1  zf-NOSIP  Zinc-finger of nitric oxide synthase-interacting pr


Domain annotation for each model (and alignments):
>> U-box  U-box domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.9   0.0   8.8e-15   3.9e-11       4      66 ..      32      92 ..      30      97 .. 0.92

  Alignments for each domain:
  == domain 1  score: 42.9 bits;  conditional E-value: 8.8e-15
                GGB-TTT-SB-SSEEEETTTEEEEHHHHHHHHTT.SSB-TTT-SB--GGGSEE-HHHHHHHHH CS
       U-box  4 efldpitlelmkdPvilpsgvvvdrstiekhllsrdktdPftrepltqdqlipnlelKekIde 66
                e+++pit+ l  dPv + +g v++rs+ie++l++ ++ +P+t+ ++   +l+p l +K++I +
  KOO21514.1 32 ELVCPITWSLPVDPVTAEDGNVYERSAIEEWLEK-QHKSPVTNLAMG-TKLLPALRVKNMIRA 92
                899*******************************.*******98875.6899*******9987 PP

>> Sel1  Sel1 repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.3   1.0   8.1e-09   3.6e-05       3      37 ..     131     164 ..     129     165 .. 0.87
   2 ?    3.3   0.0     0.033   1.5e+02      11      21 ..     174     184 ..     169     200 .. 0.86
   3 !   12.3   0.6   4.6e-05      0.21       3      34 ..     204     234 ..     203     237 .. 0.87

  Alignments for each domain:
  == domain 1  score: 24.3 bits;  conditional E-value: 8.1e-09
        Sel1   3 AmyrLGmfylylnGl.gvpkDpekAiewyekAAeqG 37 
                 Amy LG +y    G+ g+ kD  kA+ew+ek+ e+G
  KOO21514.1 131 AMYILGAWY--KLGQkGLAKDDAKAFEWFEKSHEAG 164
                 9*****555..****99**************86666 PP

  == domain 2  score: 3.3 bits;  conditional E-value: 0.033
        Sel1  11 ylylnGlgvpk 21 
                 ++yl+G gvpk
  KOO21514.1 174 MCYLEGIGVPK 184
                 688******98 PP

  == domain 3  score: 12.3 bits;  conditional E-value: 4.6e-05
        Sel1   3 AmyrLGmfylylnGl.gvpkDpekAiewyekAA 34 
                 A+y +G   +y  Gl g p D++ A+++y + A
  KOO21514.1 204 ACYLMG--NAYAGGLcGFPEDEKMARRYYSMVA 234
                 9*****..777****88999*********9865 PP

>> zf-Nse  Zinc-finger of the MIZ type in Nse subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.1   0.0   3.9e-07    0.0017       6      53 ..      27      71 ..      25      73 .. 0.83

  Alignments for each domain:
  == domain 1  score: 18.1 bits;  conditional E-value: 3.9e-07
                XSSBXXSB-TTTSSB-SSEEEESSS--EEEHHHHHHHCTTTS-EE-SC CS
      zf-Nse  6 eeerislkCPltlqpfeePvtskkCpHvFEreaIlelikrkktvkCPv 53
                ee+ ++l CP+t +  ++Pvt    + v+Er+aI+e +  +k+ k Pv
  KOO21514.1 27 EEAFAELVCPITWSLPVDPVTAEDGN-VYERSAIEEWL--EKQHKSPV 71
                5667899***************9976.***********..55555555 PP

>> zf-NOSIP  Zinc-finger of nitric oxide synthase-interacting protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.0   9.3e-06     0.042      43      74 ..      35      66 ..       6      67 .. 0.81

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 9.3e-06
    zf-NOSIP 43 cslslqacrdpvltedgylyekeaileyilhq 74
                c ++     dpv +edg +ye+ ai e++ +q
  KOO21514.1 35 CPITWSLPVDPVTAEDGNVYERSAIEEWLEKQ 66
                566666678****************9987665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (259 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       521  (0.0290591); expected 358.6 (0.02)
Passed bias filter:                      437  (0.0243739); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.42u 0.25s 00:00:00.67 Elapsed: 00:00:00.40
# Mc/sec: 1955.22
//
Query:       KOO21515.1  [L=149]
Description: hypothetical protein Ctob_003486 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    0.00011   22.0   0.0    0.00015   21.6   0.0    1.1  1  Methyltransf_16  Lysine methyltransferase


Domain annotation for each model (and alignments):
>> Methyltransf_16  Lysine methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.6   0.0   8.3e-09   0.00015     102     167 ..      44     109 ..      40     114 .. 0.90

  Alignments for each domain:
  == domain 1  score: 21.6 bits;  conditional E-value: 8.3e-09
  Methyltransf_16 102 vevLdWgeeleedllekeevDlilaaDcvYledslelLvkvLkellkkeskvlvaykkrreaekkF 167
                      v +L Wg+      l + ++D+i  aD++ + d+ e L+++L++l ++ ++vl+ +  r ++ +++
       KOO21515.1  44 VAKLLWGDAADLAGLPHPKYDIIAGADVLLFVDAHEGLLRTLEQLASATTVVLIEHTDRGKEAHEY 109
                      56799*9998778888889*************************************9997776655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (149 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       250  (0.0139439); expected 358.6 (0.02)
Passed bias filter:                      228  (0.0127168); expected 358.6 (0.02)
Passed Vit filter:                         8  (0.000446204); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.22s 00:00:00.63 Elapsed: 00:00:00.40
# Mc/sec: 1109.86
//
Query:       KOO21516.1  [L=63]
Description: hypothetical protein Ctob_003485, partial [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (63 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       473  (0.0263818); expected 358.6 (0.02)
Passed bias filter:                      305  (0.0170115); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.25s 00:00:00.58 Elapsed: 00:00:00.39
# Mc/sec: 484.97
//
Query:       KOO21517.1  [L=1342]
Description: hypothetical protein Ctob_003484, partial [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1342 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1695  (0.0945396); expected 358.6 (0.02)
Passed bias filter:                      425  (0.0237046); expected 358.6 (0.02)
Passed Vit filter:                        52  (0.00290033); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.96u 0.25s 00:00:01.21 Elapsed: 00:00:00.44
# Mc/sec: 9238.17
//
Query:       KOO21518.1  [L=471]
Description: v-type proton ATPase subunit brain isoform [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.3e-62  209.9   0.0    4.5e-62  209.5   0.0    1.2  1  ATP-synt_ab    ATP synthase alpha/beta family, nucleotide-bin
    9.1e-12   45.3   0.6    1.9e-11   44.3   0.6    1.5  1  ATP-synt_ab_N  ATP synthase alpha/beta family, beta-barrel do


Domain annotation for each model (and alignments):
>> ATP-synt_ab  ATP synthase alpha/beta family, nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  209.5   0.0     5e-66   4.5e-62       1     213 []     147     362 ..     147     362 .. 0.95

  Alignments for each domain:
  == domain 1  score: 209.5 bits;  conditional E-value: 5e-66
                  SSHHHHHHS-EBTT-EEEEEES.TTSSHHHHH.HHHHHHSSTSS.EEEEEEESEEHHHHHHHHHHCHHSSGGGGEEEEEEETTS-HHHHHHHHHHHHH CS
                  xxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxx.xxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  ATP-synt_ab   1 GirvlDalfpivqGqrtlipga.fgvGktvis.qslskqsnsdd.aiiyvgiGergnevaevleefpegtimkrtvlvantsnepvaareasiytgit 95 
                  Gi+++D++ ++++Gq++ +++  +g+ k +   +s s  s +++ ai+++++G ++++++ + ++f+e+++++r+ l++n +n+p+++r++++++++t
   KOO21518.1 147 GISTIDCMNSVARGQKIPLFSPlAGLVKGAQKhSSTSDDS-EESfAIVFAAMGVNMETARFFKQDFEENGALERVPLFLNLANDPTIERIITPRIALT 243
                  899*****************97467888777734444444.4456***************************************************** PP

                  HHHHHHH.TTSEEEEEEETHHHHHHHHHHHHHHTTTSBEGGGSBTTHHHHHHHHHTTSEEETSSEEEEEEEEEEE-GGCSTTSHHHHHHHHHSSEEEE CS
                  xxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  ATP-synt_ab  96 lAEyfrd.qgknvlliadslsrwaeAlreislrlgempadqgypaylgaklaslyERagkapdrtGsvtivaavspaggDfsdpvttatlgitdgfiv 192
                  +AEy+++ ++k+vl i++++s +a+Alre+s++ +e+p+++gyp+y++++la++yERag+++ r Gs+t++++++++++D+++p+++ t +it+g+i+
   KOO21518.1 244 VAEYMAYeKDKHVLAIMTDMSSYADALREVSAAREEVPGRRGYPGYMYTDLATIYERAGRVEGRAGSITQFPILTMPNDDITHPIPDLTGYITEGQIY 341
                  ******999***************************************************************************************** PP

                  B-HHHHHTTBSSSBCTTTEEE CS
                  xxxxxxxxxxxxxxxxxxxxx RF
  ATP-synt_ab 193 LdkklaqrkhfPainvlvSvS 213
                  +d++l++r+++P+invl S+S
   KOO21518.1 342 VDRQLMNRQVYPPINVLPSLS 362
                  *******************98 PP

>> ATP-synt_ab_N  ATP synthase alpha/beta family, beta-barrel domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.3   0.6   2.1e-15   1.9e-11       4      69 .]      27      90 ..      25      90 .. 0.96

  Alignments for each domain:
  == domain 1  score: 44.3 bits;  conditional E-value: 2.1e-15
                   EETTEEEEESSTSCETCTTEEEEECCETCSTEEEEEEEEEETTEEEEEESS-STTBBT.TSEEEEES CS
  ATP-synt_ab_N  4 viGpvvdvefgigrlpgiynalevelvefgtlllgvalnlgedkVrvivmgstdGlsr.GteVkrTG 69
                   v+Gp+v+ e+++   p+  ++++  l + gt++ g++l++++ k++v+v+++t+G++   t V++ G
     KOO21518.1 27 VNGPLVILENVRR--PKFAEIVNLTLSD-GTQRTGQVLEVQGSKAVVQVFEGTSGIDNlSTAVEFSG 90
                   99******99999..**********999.*****************************999999987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (471 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       334  (0.018629); expected 358.6 (0.02)
Passed bias filter:                      330  (0.0184059); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.51u 0.23s 00:00:00.74 Elapsed: 00:00:00.42
# Mc/sec: 3405.34
//
Query:       KOO21519.1  [L=102]
Description: hypothetical protein Ctob_001899 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
  ------ inclusion threshold ------
      0.048   14.4   0.3      0.063   14.0   0.3    1.2  1  PSK_trans_fac  Rv0623-like transcription factor


Domain annotation for each model (and alignments):
>> PSK_trans_fac  Rv0623-like transcription factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.3   3.5e-06     0.063      14      75 ..       8      67 ..       6      74 .. 0.85

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 3.5e-06
                   XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--HHHHHHHHHHHHHTS--SS-SSTTSTTT CS
  PSK_trans_fac 14 areLarltgeskteAvrrAleerlerlrreraepllerllallrraaakaekedrspdekll 75
                   a   a+l+g   t+A  +A++e+ +r ++e +e+l+ rl ++l++aa   +k++ +p e l+
     KOO21519.1  8 AAAAAALAGGGGTAADPAAMAEYRRRQQHELSEALRGRLEDILTKAAS--TKDHLPPAEGLG 67
                   667899********************9999**************9999..677766766655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (102 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       660  (0.0368119); expected 358.6 (0.02)
Passed bias filter:                      521  (0.0290591); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.25s 00:00:00.64 Elapsed: 00:00:00.41
# Mc/sec: 754.62
//
Query:       KOO21520.1  [L=1042]
Description: ankyrin repeat protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.1e-15   57.0   0.0    2.6e-09   37.5   0.0    3.7  3  Ank_2           Ankyrin repeats (3 copies)
    1.8e-13   50.3   0.0    2.8e-13   49.7   0.0    1.2  1  Ion_trans       Ion transport protein
    1.8e-12   47.5   0.1     0.0028   18.2   0.0    5.0  5  Ank_4           Ankyrin repeats (many copies)
    8.9e-11   41.8   2.9     0.0049   17.2   0.0    4.7  4  Ank_5           Ankyrin repeats (many copies)
    6.6e-10   38.4   0.0       0.22   12.2   0.0    5.8  5  Ank_3           Ankyrin repeat
    3.8e-08   33.4   0.0       0.16   12.5   0.0    5.8  5  Ank             Ankyrin repeat
  ------ inclusion threshold ------
      0.013   15.4   9.1       0.03   14.2   9.1    1.5  1  Apolipoprotein  Apolipoprotein A1/A4/E domain
      0.036   13.7   0.3      0.056   13.1   0.3    1.3  1  DUF885          Bacterial protein of unknown function (DUF885
       0.29    8.6   5.5        0.4    8.1   5.5    1.1  1  DUF3584         Protein of unknown function (DUF3584)
       0.34    9.6   1.8        0.5    9.0   1.8    1.1  1  BshC            Bacillithiol biosynthesis BshC
       0.42   10.7   3.3       0.43   10.6   1.9    1.6  2  Baculo_PEP_C    Baculovirus polyhedron envelope protein, PEP,
       0.52    9.8   2.6       0.87    9.1   2.6    1.2  1  Exonuc_VII_L    Exonuclease VII, large subunit
       0.56   10.6  10.4        1.4    9.3  10.4    1.6  1  OmpH            Outer membrane protein (OmpH-like)
          1    8.4   7.1        1.5    7.8   7.1    1.2  1  Tmemb_cc2       Predicted transmembrane and coiled-coil 2 pro
        1.2    9.0   4.2        2.8    7.8   4.2    1.6  1  Phage_Mu_Gam    Bacteriophage Mu Gam like protein


Domain annotation for each model (and alignments):
>> Ank_2  Ankyrin repeats (3 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.5   0.0   2.2e-12   2.6e-09       1      82 [.      19     109 ..      12     110 .. 0.80
   2 !   12.9   0.0   0.00011      0.13      25      82 ..     112     179 ..     105     180 .. 0.72
   3 ?    2.3   0.0      0.21   2.6e+02       3      38 ..     189     228 ..     186     250 .. 0.67

  Alignments for each domain:
  == domain 1  score: 37.5 bits;  conditional E-value: 2.2e-12
       Ank_2   1 LhlAakngnle.lvklLlegadpn.kngktaLhyAakngnleivklLleh...ad.....ndgrtpLhyAarsghleivklLlekgadinlk 82 
                 L++A++n++ + +v+++  ga +  +ng+t+  +A++ g++ +++++l++   +d      +  t+L +A+r+g++e++klLle++ad+n  
  KOO21520.1  19 LIFAVENDDADgVVQHIA-GAYATdENGQTPFLLAVMMGKVAALRAFLDEgveVDgtqhdPKKGTALGFASRKGNTECAKLLLERKADPNYV 109
                 678888865542777776.65554349************9999*****97777334445666779*******************9****975 PP

  == domain 2  score: 12.9 bits;  conditional E-value: 0.00011
       Ank_2  25 ngktaLhyAakng..nleiv.klLleh......adndgrtpLhyAarsghleivklLl.ekgadinlk 82 
                 +  +++++Aa       e+v ++Ll+       ad++g tp+ +A r+   +++++Ll   g+d+++ 
  KOO21520.1 112 DRCSPMWWAANVSrpTSELVlQTLLDGnadpnlADKQGVTPILLAYRKRGKKTFQFLLaADGVDLTIV 179
                 5678888998853123477559999844566677799**********9656*******4449999876 PP

  == domain 3  score: 2.3 bits;  conditional E-value: 0.21
       Ank_2   3 lAakngnlelvklLl.egadpn..k.ngktaLhyAakngn 38 
                  A+ ng+ +++ + l +gadp+    +g t+L +A  + +
  KOO21520.1 189 NASDNGDASVLLHCLsAGADPSrpAaDGTTPLELARDRAH 228
                 4566775554444456888888742688888887766554 PP

>> Ion_trans  Ion transport protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.7   0.0   2.3e-16   2.8e-13      50     244 ..     532     795 ..     519     796 .. 0.75

  Alignments for each domain:
  == domain 1  score: 49.7 bits;  conditional E-value: 2.3e-16
                 HHHHHHHHTH......HHHHHHCHSHHHHHHHHHHHHHHHHH....HHHH...........HHHHHHHHHHHHGGGGGGHHHCHSHHHHHHHHHHHHHH CS
   Ion_trans  50 mllkilalgl......likkrYlrdpwnilDflvvlpsllsl....vlse...........esllllsvlrlfrvlrllklisrleglrtlvtalirsv 127
                 +  ++la+ l       +++ +l dp n+l + + +++ lsl                    +l + svl lf     +++++r ++   lv++ ++++
  KOO21520.1 532 AMAQFLARELfgltsvRGRRMWLADPLNWLELGAYSFATLSLslrlE--LgrlpelervdeAALQATSVLLLF-TGIGFRFLQRDQKRGPLVMMTVQMM 627
                 456777766667788889999*********************66550..145555555664555666666666.4556889999999999********* PP

                 HHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCC.................................................CCSCCSTSSSTTTSSSSS CS
   Ion_trans 128 kdllnvlllllvvlfifaligvqlfkgklrek.................................................necaktwenpnngntnFd 177
                 +d+ln+l+l++ +l++fa +++ lfk                                                       +                 
  KOO21520.1 628 RDVLNFLVLFASILVAFAAAFLVLFK-----GleagglgedcavfdsdggggleeddvpsldrswgpdfgdaaswvieesvE----------------- 704
                 *************************2.....133346777777777777777766666666666655555555554433330................. PP

                 S.........................HHHHHHHHHHHHTTSSHHHHHHHHHHHS..HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
   Ion_trans 178 n.........................fftallwlfrlmttegwgdilyatldek..skvaliyfvifiilgsflllNlliaviadnfqeltere 244
                 +                         ++ ++++lf++m +    d    +l+++  + +a ++++++++++++l  N+lia++a++f+ ++e++
  KOO21520.1 705 ErtrekrrrlhvgdedegrrvgmlwhVGVSVVALFEIMLGS---DNPIGCLRAStqPITAPAFMIAYLVVAVLLGTNMLIALMAKTFDLIHEQQ 795
                 03333444444444566666666666*************99...8888888888888899*****************************99986 PP

>> Ank_4  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.0     1e-05     0.012      15      55 .]      14      65 ..      13      65 .. 0.82
   2 !   18.2   0.0   2.3e-06    0.0028       7      43 ..      86     121 ..      81     125 .. 0.87
   3 !    6.7   0.0    0.0093        11       5      55 .]     117     169 ..     115     169 .. 0.77
   4 ?   -0.5   0.0       1.7     2e+03      17      50 ..     165     198 ..     161     206 .. 0.74
   5 ?   -0.1   0.0       1.2   1.5e+03      20      39 ..     202     220 ..     184     223 .. 0.82

  Alignments for each domain:
  == domain 1  score: 16.2 bits;  conditional E-value: 1e-05
       Ank_4 15 elvrlLl....ekgad........inaqdnrsGetalhiAakrgnveilklLl 55
                e+v+ L+    + +ad         +a+ +++G+t++  A+++g+v +l+ +l
  KOO21520.1 14 ETVKALIfaveNDDADgvvqhiagAYAT-DENGQTPFLLAVMMGKVAALRAFL 65
                6777777777433677888888888999.********************9987 PP

  == domain 2  score: 18.2 bits;  conditional E-value: 2.3e-06
       Ank_4   7 yaaisgrlelvrlLlekgadinaqdnrsGetalhiAa 43 
                  a  +g++e+++lLle++ad+n++ +++  ++++ Aa
  KOO21520.1  86 FASRKGNTECAKLLLERKADPNYV-DEDRCSPMWWAA 121
                 57779*******************.998889988886 PP

  == domain 3  score: 6.7 bits;  conditional E-value: 0.0093
       Ank_4   5 Lhyaai...sgrlelvrlLlekgadinaqdnrsGetalhiAakrgnveilklLl 55 
                 + +aa+      + +++ Ll+ +ad+n   +++G t++  A ++  ++ +++Ll
  KOO21520.1 117 MWWAANvsrPTSELVLQTLLDGNADPNLA-DKQGVTPILLAYRKRGKKTFQFLL 169
                 5566666656667789****889*****8.*********997665566666665 PP

  == domain 4  score: -0.5 bits;  conditional E-value: 1.7
       Ank_4  17 vrlLlek.gadinaqdnrsGetalhiAakrgnvei 50 
                  ++Ll+  g+d+  + ++ G  +l +A  +g+ ++
  KOO21520.1 165 FQFLLAAdGVDLTIV-DAKGVGLLLNASDNGDASV 198
                 577886669**8888.8888888888877777444 PP

  == domain 5  score: -0.1 bits;  conditional E-value: 1.2
       Ank_4  20 LlekgadinaqdnrsGetal 39 
                 +l+ gad+ +   ++G t+l
  KOO21520.1 202 CLSAGADPSRP-AADGTTPL 220
                 56889**9998.89999998 PP

>> Ank_5  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.6   0.0     0.004       4.8      10      56 .]      10      52 ..       4      52 .. 0.83
   2 !   17.2   0.0   4.1e-06    0.0049      15      53 ..      80     117 ..      66     117 .. 0.89
   3 ?    3.7   0.0     0.069        82      33      56 .]     133     156 ..     130     160 .. 0.70
   4 !    9.7   0.3   0.00088         1       1      56 []     168     223 ..     168     223 .. 0.94

  Alignments for each domain:
  == domain 1  score: 7.6 bits;  conditional E-value: 0.004
       Ank_5 10 nrldgggntpLhvAakygaadvvrlLlargadlnltdsrGltaldlA 56
                n+l+ + + +L++A+++  ad v   +   a + +td++G+t++ lA
  KOO21520.1 10 NALE-ETVKALIFAVENDDADGVVQHI---AGAYATDENGQTPFLLA 52
                5554.5679*******88888888888...8************9887 PP

  == domain 2  score: 17.2 bits;  conditional E-value: 4.1e-06
       Ank_5  15 ggntpLhvAakygaadvvrlLlargadlnltdsrGltal 53 
                 +g t+L +A+++g+ ++++lLl+r ad+n  d++  +++
  KOO21520.1  80 KG-TALGFASRKGNTECAKLLLERKADPNYVDEDRCSPM 117
                 45.9999**************************998885 PP

  == domain 3  score: 3.7 bits;  conditional E-value: 0.069
       Ank_5  33 rlLlargadlnltdsrGltaldlA 56 
                 + Ll+ +ad+nl d++G t++ lA
  KOO21520.1 133 QTLLDGNADPNLADKQGVTPILLA 156
                 566777777777777777776555 PP

  == domain 4  score: 9.7 bits;  conditional E-value: 0.00088
       Ank_5   1 LlehgpadvnrldgggntpLhvAakygaadvvrlLlargadlnltdsrGltaldlA 56 
                 Ll+++ +d+   d +g+  L +A+ +g a+v++ +l  gad+    ++G t+l+lA
  KOO21520.1 168 LLAADGVDLTIVDAKGVGLLLNASDNGDASVLLHCLSAGADPSRPAADGTTPLELA 223
                 666777999999999999999*********************************99 PP

>> Ank_3  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.2   0.0   0.00018      0.22       1      30 [.      44      72 ..      44      73 .. 0.93
   2 !   10.0   0.0   0.00095       1.1       4      30 ..      82     107 ..      80     107 .. 0.96
   3 ?    5.3   0.0     0.032        38       3      30 ..     114     143 ..     112     144 .. 0.88
   4 ?    2.1   0.0      0.36   4.3e+02       2      29 ..     149     176 ..     148     178 .. 0.90
   5 ?    0.6   0.0       1.1   1.3e+03       5      29 ..     186     209 ..     182     211 .. 0.87

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 0.00018
       Ank_3  1 nGetpLhlAarsgnleivkfLlenkgadvn 30
                nG+tp+ lA++ g+++ ++++l+  g++v+
  KOO21520.1 44 NGQTPFLLAVMMGKVAALRAFLD-EGVEVD 72
                7**********************.799886 PP

  == domain 2  score: 10.0 bits;  conditional E-value: 0.00095
       Ank_3   4 tpLhlAarsgnleivkfLlenkgadvn 30 
                 t+L +A r gn+e +k+Lle + ad+n
  KOO21520.1  82 TALGFASRKGNTECAKLLLE-RKADPN 107
                 899*****************.9***98 PP

  == domain 3  score: 5.3 bits;  conditional E-value: 0.032
       Ank_3   3 etpLhlAarsgnle...ivkfLlenkgadvn 30 
                 ++p+ +Aa   +++   +++ Ll+  +ad+n
  KOO21520.1 114 CSPMWWAANVSRPTselVLQTLLD-GNADPN 143
                 69999********66689******.9****9 PP

  == domain 4  score: 2.1 bits;  conditional E-value: 0.36
       Ank_3   2 GetpLhlAarsgnleivkfLlenkgadv 29 
                 G tp+ lA r    +  +fLl   g+d+
  KOO21520.1 149 GVTPILLAYRKRGKKTFQFLLAADGVDL 176
                 779999****999999******999998 PP

  == domain 5  score: 0.6 bits;  conditional E-value: 1.1
       Ank_3   5 pLhlAarsgnleivkfLlenkgadv 29 
                 +L  A  +g+ +++  +l   gad+
  KOO21520.1 186 LLLNASDNGDASVLLHCLS-AGADP 209
                 7899999*****9999999.89998 PP

>> Ank  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.2   0.0      0.11   1.4e+02       1      27 [.      44      71 ..      44      77 .. 0.83
   2 !   12.5   0.0   0.00013      0.16       4      31 ..      82     110 ..      82     111 .. 0.89
   3 ?    5.6   0.0      0.02        24       3      31 ..     114     146 ..     112     147 .. 0.74
   4 ?    4.1   0.0      0.06        72       2      31 ..     149     180 ..     148     181 .. 0.86
   5 ?   -1.4   0.0       3.2   3.9e+03       1      10 [.     215     224 ..     215     245 .. 0.68

  Alignments for each domain:
  == domain 1  score: 3.2 bits;  conditional E-value: 0.11
                TSBBHHHHHHHHTTHHHHHHHH.TTTST CS
         Ank  1 dGnTPLHlAatngkkriiklLL.hGAnl 27
                +G TP  lA++ gk+  ++++L  G ++
  KOO21520.1 44 NGQTPFLLAVMMGKVAALRAFLdEGVEV 71
                7*********999999999999558655 PP

  == domain 2  score: 12.5 bits;  conditional E-value: 0.00013
                 BHHHHHHHHTTHHHHHHHH.TTTSTTCBT CS
         Ank   4 TPLHlAatngkkriiklLL.hGAnlnald 31 
                 T+L  A++ g+++++klLL + A++n +d
  KOO21520.1  82 TALGFASRKGNTECAKLLLeRKADPNYVD 110
                 788899*************556****998 PP

  == domain 3  score: 5.6 bits;  conditional E-value: 0.02
                 BBHHHHHH...HHTTHHHHHHHHTT.TSTTCBT CS
         Ank   3 nTPLHlAa...tngkkriiklLLhG.Anlnald 31 
                 ++P  +Aa   ++ ++ +++ LL+G A++n+ d
  KOO21520.1 114 CSPMWWAAnvsRPTSELVLQTLLDGnADPNLAD 146
                 5677777755544448899****999****988 PP

  == domain 4  score: 4.1 bits;  conditional E-value: 0.06
                 SBBHHHHHHHHTTHHHHHHHH..TTTSTTCBT CS
         Ank   2 GnTPLHlAatngkkriiklLL..hGAnlnald 31 
                 G TP  lA +  +k   ++LL  +G +l+++d
  KOO21520.1 149 GVTPILLAYRKRGKKTFQFLLaaDGVDLTIVD 180
                 99*****77666699******977*****998 PP

  == domain 5  score: -1.4 bits;  conditional E-value: 3.2
                 TSBBHHHHHH CS
         Ank   1 dGnTPLHlAa 10 
                 dG TPL lA 
  KOO21520.1 215 DGTTPLELAR 224
                 899**98863 PP

>> Apolipoprotein  Apolipoprotein A1/A4/E domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   9.1   2.5e-05      0.03     105     186 ..     884     968 ..     862     971 .. 0.75

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 2.5e-05
                     HHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH-----..---...--SSSHHHHHHHTS-TTSHHHHHS--XXXXXXXXXXX CS
  Apolipoprotein 105 rerlerhvealkarlapyveelrqklaerleelkeslaphaeeve...erlssrveelrekleeqaeelrerleanleelkaqle 186
                     r+ + +  +++ a++++  eel +++ +++ e+k +la+ +++++    r+++ +e l++kl++q ++l + +++ +++l   l+
      KOO21520.1 884 RSNMLKQGSRIAAQVDEVKEELNAEVTAHVAEIKAQLAEVKAQMGrgeGRVEEMMELLEHKLNKQSQQLAQMAQREQQQLALILS 968
                     5555566678888888888888888888888888888888887777777888888888888888888888888888888866555 PP

>> DUF885  Bacterial protein of unknown function (DUF885)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.3   4.7e-05     0.056     229     317 ..     902     985 ..     854    1026 .. 0.72

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 4.7e-05
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHH.-.HHHHHHHHHCH-GGGEEESHHHHHHHHHHHHHHHHHHHCCHHHCCT.---TTS-GCCCEE CS
      DUF885 229 peeihelglaelariraemeaiakevgf.kgdlaevlaalrtdprfyleetdagreellaaaraaiaeldaklpehf.gllpkaplevrrv 317
                  ee+ +   a +a+i+a+++++++++g  +g ++e+++ l+ +     +++    ++l + a++++++l+  l +   +++p++ ++  + 
  KOO21520.1 902 KEELNAEVTAHVAEIKAQLAEVKAQMGRgEGRVEEMMELLEHKL----NKQ---SQQLAQMAQREQQQLALILSKLGiDAPPATSYKSSPA 985
                 4788888889999999999999999988789**********443....344...3666666666666666655555544566555544444 PP

>> DUF3584  Protein of unknown function (DUF3584)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.1   5.5   0.00033       0.4     371     453 ..     888     970 ..     863     982 .. 0.84

  Alignments for each domain:
  == domain 1  score: 8.1 bits;  conditional E-value: 0.00033
     DUF3584 371 tekhqdvqekydrrkqkikeeleeeleklkerleaireekdrlkaaieealealesqlrkqleaqkeelneeekelesrlsel 453
                 +++   + ++ d+ k +++ e  ++++++k++l++++ +  r   + ee +e le +l+kq ++  + +++e+++l+  ls+l
  KOO21520.1 888 LKQGSRIAAQVDEVKEELNAEVTAHVAEIKAQLAEVKAQMGRGEGRVEEMMELLEHKLNKQSQQLAQMAQREQQQLALILSKL 970
                 45566788899999999999999999999999999999999999999999999999999999999999999999998877765 PP

>> BshC  Bacillithiol biosynthesis BshC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.0   1.8   0.00042       0.5     390     491 ..     862     961 ..     846     968 .. 0.78

  Alignments for each domain:
  == domain 1  score: 9.0 bits;  conditional E-value: 0.00042
                 HHHHHHHTT--HHHHHH-SHHHHHHHHHHTS-HHHHHHHHHHHHHHHHHHHHHHHHHHTT-GGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHH CS
        BshC 390 vakkleklglsvedlfekleelkkklveeaseleldelfeeakeeleeafealkelaakidktleklveanekkilkqlekLekkllkaekrkheeelr 488
                  ++ +e++  s e +  + ++++++++++ s++  +  ++e+keel+++++a  +++++  ++++  + + e ++++ +e Le+kl+k++++  + + r
  KOO21520.1 862 LKEAMEEYLKSCEGAQGEDDKWRSNMLKQGSRIAAQ--VDEVKEELNAEVTAHVAEIKAQLAEVKAQMGRGEGRVEEMMELLEHKLNKQSQQLAQMAQR 958
                 466777887777777778899999999999988888..9999999999988888888888888888888999999999999999999888776665555 PP

                 HHH CS
        BshC 489 qle 491
                 + +
  KOO21520.1 959 EQQ 961
                 544 PP

>> Baculo_PEP_C  Baculovirus polyhedron envelope protein, PEP, C terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.0       5.9   7.1e+03     104     127 ..      12      35 ..      11      41 .. 0.81
   2 ?   10.6   1.9   0.00036      0.43      32      91 ..     894     964 ..     886     972 .. 0.46

  Alignments for each domain:
  == domain 1  score: -3.1 bits;  conditional E-value: 5.9
  Baculo_PEP_C 104 instLnnllqalnnldlgalsqel 127
                   +++t++ l+ a++n d +++ q  
    KOO21520.1  12 LEETVKALIFAVENDDADGVVQHI 35 
                   578999999999999999988765 PP

  == domain 2  score: 10.6 bits;  conditional E-value: 0.00036
  Baculo_PEP_C  32 ilaqlatlldaietqLnalsedlksllaeldt...........rldtlltnLtdalnalqdtlrneLtnln 91 
                   i+aq+ + +++++ +++a  +++k+ lae+++           +++ l ++L+++ ++l++  + e + l 
    KOO21520.1 894 IAAQVDEVKEELNAEVTAHVAEIKAQLAEVKAqmgrgegrveeMMELLEHKLNKQSQQLAQMAQREQQQLA 964
                   55555555555555555555555555555554444444411114444444455444444444444433333 PP

>> Exonuc_VII_L  Exonuclease VII, large subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.1   2.6   0.00073      0.87     140     214 ..     889     963 ..     879     990 .. 0.71

  Alignments for each domain:
  == domain 1  score: 9.1 bits;  conditional E-value: 0.00073
  Exonuc_VII_L 140 pdkaeleeqleelerrlekaikrlleekkqrleklasrl...k.speellerkrqrldeleerleralkkqlkkkrerl 214
                   ++ +++++q++e++++l+ +++ ++ e k++l +++ ++   + + ee++e  +++l++ +++l ++     ++++++l
    KOO21520.1 889 KQGSRIAAQVDEVKEELNAEVTAHVAEIKAQLAEVKAQMgrgEgRVEEMMELLEHKLNKQSQQLAQMA----QREQQQL 963
                   45678889999999999999999999999999999988865533556666666666666666666632....3333333 PP

>> OmpH  Outer membrane protein (OmpH-like)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3  10.4    0.0011       1.4      15      95 ..     889     967 ..     885     971 .. 0.69

  Alignments for each domain:
  == domain 1  score: 9.3 bits;  conditional E-value: 0.0011
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTS.-HHHHHH.HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
        OmpH  15 pegkaaqeqlekkfkklqaeleakekelqklqeelqkkakklekeekeqe.lqkkeqelqqkqqqkaqelqkkqqellkpil 95 
                 ++g ++ +q+++ +++l+ae++a  +e++++ +e ++++     e + +e ++ +e +l++ q+q+  ++++++q+ l+ il
  KOO21520.1 889 KQGSRIAAQVDEVKEELNAEVTAHVAEIKAQLAEVKAQMGR--GEGRVEEmMELLEHKLNK-QSQQLAQMAQREQQQLALIL 967
                 789999*****************************955555..444444446666666666.44444444444444444455 PP

>> Tmemb_cc2  Predicted transmembrane and coiled-coil 2 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.8   7.1    0.0013       1.5     232     299 ..     889     960 ..     877     964 .. 0.87

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 0.0013
   Tmemb_cc2 232 eeqerleeelerlkeqlkkel....kllkqaLqeeryryerLEeqlndlteLhqnEienLKqelasmeekva 299
                 ++ +r++++++++ke+l+ e+    + +k  L e++ ++ r E  + +++eL  + + +  q+la+m+++ +
  KOO21520.1 889 KQGSRIAAQVDEVKEELNAEVtahvAEIKAQLAEVKAQMGRGEGRVEEMMELLEHKLNKQSQQLAQMAQREQ 960
                 5667888888888888888886666899***************************************99866 PP

>> Phage_Mu_Gam  Bacteriophage Mu Gam like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.8   4.2    0.0024       2.8      12      68 ..     892     948 ..     885     965 .. 0.77

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 0.0024
                   HHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCTHHHH-.. CS
  Phage_Mu_Gam  12 aelkreleeieaeaneeiaaikekleaeleplkkeieylesllkqYaeankdeLfkd 68 
                     + ++++e+++e+n+e+ a  ++ +a+l+++k+++   e+ +++ +e ++++L k+
    KOO21520.1 892 SRIAAQVDEVKEELNAEVTAHVAEIKAQLAEVKAQMGRGEGRVEEMMELLEHKLNKQ 948
                   567788889999999999999999999999999999999999998888888888432 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1042 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1422  (0.0793128); expected 358.6 (0.02)
Passed bias filter:                      884  (0.0493056); expected 358.6 (0.02)
Passed Vit filter:                       131  (0.0073066); expected 17.9 (0.001)
Passed Fwd filter:                        15  (0.000836633); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              15  [number of targets reported over threshold]
# CPU time: 1.01u 0.32s 00:00:01.33 Elapsed: 00:00:00.47
# Mc/sec: 6611.58
//
Query:       KOO21521.1  [L=252]
Description: tubulin folding cofactor b [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.8e-18   64.9   3.2    9.1e-18   64.0   1.8    1.9  2  CAP_GLY   CAP-Gly domain


Domain annotation for each model (and alignments):
>> CAP_GLY  CAP-Gly domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.0   1.8   5.1e-22   9.1e-18       2      64 ..      36     100 ..      35     101 .. 0.92
   2 ?   -0.4   0.0     0.069   1.2e+03      33      43 ..     121     131 ..     106     136 .. 0.82

  Alignments for each domain:
  == domain 1  score: 64.0 bits;  conditional E-value: 5.1e-22
     CAP_GLY   2 gdrvk.lkegrrGvvryvGpvp.fakgewvGveldepnGkndGsvkgkrYFeckpnrGvFvrpek 64 
                 gdrv   +++r++ vr+vG++p   kg wvGv++d+p+G+ndGsvkg+r Fec    G F+rp++
  KOO21521.1  36 GDRVIvDPGNRKAEVRFVGKIPeIGKGYWVGVQYDDPVGRNDGSVKGRRCFECTHDFGGFLRPNH 100
                 899854789************9656789***********************************97 PP

  == domain 2  score: -0.4 bits;  conditional E-value: 0.069
     CAP_GLY  33 ldepnGkndGs 43 
                 lde+ G+ dG+
  KOO21521.1 121 LDEKLGADDGK 131
                 89*9******7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (252 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       385  (0.0214736); expected 358.6 (0.02)
Passed bias filter:                      299  (0.0166769); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.23s 00:00:00.66 Elapsed: 00:00:00.40
# Mc/sec: 1869.18
//
Query:       KOO21522.1  [L=100]
Description: ring u-box domain and arm repeat-containing protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    8.9e-08   31.9   0.1     0.0027   17.7   0.1    2.2  2  Arm       Armadillo/beta-catenin-like repeat


Domain annotation for each model (and alignments):
>> Arm  Armadillo/beta-catenin-like repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.7   0.1   1.5e-07    0.0027       7      40 ..       9      43 ..       4      44 .. 0.89
   2 !   12.5   0.0   6.5e-06      0.12       2      27 ..      46      71 ..      45      85 .. 0.81

  Alignments for each domain:
  == domain 1  score: 17.7 bits;  conditional E-value: 1.5e-07
                HHH.HTTHHHHHHHHTTTSSHHHHHHHHHHHHHHT CS
         Arm  7 avi.eaGavppLvrLLssedeevqeeAawALsNLa 40
                + i +aG++ pLv+  +s+ ++ +e A++A+++La
  KOO21522.1  9 LAInDAGGIVPLVKICESGTTQGKEKATAAIWHLA 43
                4444******************************8 PP

  == domain 2  score: 12.5 bits;  conditional E-value: 6.5e-06
                HHHHHHHHHTTHHHHHHHHTTTSSHH CS
         Arm  2 senkdavieaGavppLvrLLssedee 27
                 en  a+   Ga++pLv++L ++ +e
  KOO21522.1 46 RENQVALAANGAIKPLVSMLADGTPE 71
                68999***************976655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (100 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       387  (0.0215851); expected 358.6 (0.02)
Passed bias filter:                      300  (0.0167327); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.28s 00:00:00.64 Elapsed: 00:00:00.42
# Mc/sec: 721.37
//
Query:       KOO21523.1  [L=297]
Description: hypothetical protein Ctob_001911 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.8e-05   24.9   3.7         14    6.1   0.0    5.9  7  FeoA             FeoA domain
    2.2e-05   24.1   1.0        2.9    7.7   0.1    5.2  6  Ribosomal_L7Ae   Ribosomal protein L7Ae/L30e/S12e/Gadd45 fami
     0.0061   15.9   0.0         12    5.2   0.0    4.0  5  DUF3747          Protein of unknown function (DUF3747)
  ------ inclusion threshold ------
      0.011   16.2   1.5         11    6.5   0.2    4.4  6  CENP-H           Centromere protein H (CENP-H)
      0.081   12.5   2.0         31    4.0   0.1    3.8  5  Cytadhesin_P30   Cytadhesin P30/P32
       0.17   11.7   0.9         72    3.3   0.1    4.0  5  ThiC-associated  ThiC-associated domain
        0.2   10.9   1.0         11    5.2   0.1    2.9  3  PrgH             Type III secretion system protein PrgH-EprH 
        1.1    8.2   3.9         36    3.3   0.0    3.1  4  Poty_PP          Potyviridae polyprotein


Domain annotation for each model (and alignments):
>> FeoA  FeoA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.1   0.0     0.012        26      49      67 ..      21      39 ..      14      40 .. 0.90
   2 ?   -1.8   0.0       1.8   3.9e+03      49      65 ..      57      73 ..      50      74 .. 0.81
   3 !    6.1   0.0    0.0061        14      52      67 ..      96     111 ..      88     112 .. 0.89
   4 ?   -0.6   0.0      0.72   1.6e+03      48      67 ..     128     147 ..     120     148 .. 0.84
   5 ?    5.1   0.0     0.012        27      52      67 ..     182     197 ..     178     198 .. 0.93
   6 ?   -1.5   0.0       1.4   3.2e+03      50      67 ..     216     233 ..     211     234 .. 0.84
   7 ?    2.7   0.0     0.067   1.5e+02      48      67 ..     250     269 ..     243     270 .. 0.90

  Alignments for each domain:
  == domain 1  score: 5.1 bits;  conditional E-value: 0.012
                -SEEEEETTEEEEE-HHHH CS
        FeoA 49 gplvvrvgdtrvaLgreeA 67
                ++++++v+ +++aL+r++A
  KOO21523.1 21 NTTSIKVHASKIALRRGIA 39
                5689*************99 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 1.8
                -SEEEEETTEEEEE-HH CS
        FeoA 49 gplvvrvgdtrvaLgre 65
                ++++++v+ +++aL r+
  KOO21523.1 57 NTTSIKVHASKIALCRG 73
                56789999999999775 PP

  == domain 3  score: 6.1 bits;  conditional E-value: 0.0061
                 EEEETTEEEEE-HHHH CS
        FeoA  52 vvrvgdtrvaLgreeA 67 
                 +v v+d+++aL+r++A
  KOO21523.1  96 SVTVHDSKIALRRGIA 111
                 799***********99 PP

  == domain 4  score: -0.6 bits;  conditional E-value: 0.72
                 S-SEEEEETTEEEEE-HHHH CS
        FeoA  48 ggplvvrvgdtrvaLgreeA 67 
                 g+++++ v+  + aL+r++A
  KOO21523.1 128 GNTTSITVHACKQALRRGIA 147
                 66788889989999***998 PP

  == domain 5  score: 5.1 bits;  conditional E-value: 0.012
                 EEEETTEEEEE-HHHH CS
        FeoA  52 vvrvgdtrvaLgreeA 67 
                 +v v+d+++aL+r++A
  KOO21523.1 182 SVMVHDSKIALRRGIA 197
                 699***********99 PP

  == domain 6  score: -1.5 bits;  conditional E-value: 1.4
                 SEEEEETTEEEEE-HHHH CS
        FeoA  50 plvvrvgdtrvaLgreeA 67 
                   +v v+ +++ L+ ++A
  KOO21523.1 216 SASVTVHASKFKLRHGIA 233
                 568999999999999998 PP

  == domain 7  score: 2.7 bits;  conditional E-value: 0.067
                 S-SEEEEETTEEEEE-HHHH CS
        FeoA  48 ggplvvrvgdtrvaLgreeA 67 
                 g ++++ v+  ++aL+r++A
  KOO21523.1 250 GHTVSITVHACKLALRRGIA 269
                 678999************99 PP

>> Ribosomal_L7Ae  Ribosomal protein L7Ae/L30e/S12e/Gadd45 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.7   0.1    0.0013       2.9       8      55 ..      26      72 ..       8      85 .. 0.82
   2 ?    3.9   0.0     0.019        44      14      40 ..     104     130 ..      93     138 .. 0.82
   3 ?   -0.4   0.0      0.44   9.8e+02      14      38 ..     140     164 ..     131     171 .. 0.83
   4 ?    4.3   0.0     0.014        32      15      41 ..     191     217 ..     181     224 .. 0.84
   5 ?    1.8   0.0     0.092   2.1e+02      13      42 ..     225     254 ..     216     272 .. 0.86
   6 ?   -2.2   0.0       1.6   3.5e+03      16      37 ..     264     285 ..     251     289 .. 0.78

  Alignments for each domain:
  == domain 1  score: 7.7 bits;  conditional E-value: 0.0013
                    HHHHHHTEEEESHHHHHHHHHTTTESEEEEETTSSSGGHHHHHHHHHH CS
  Ribosomal_L7Ae  8 kkakkagklvlGlkevtkalergeaklvilAedvepeekkkllealck 55
                    k+ + +  l++G+  v  +l++++  lvil++ ++ +   +   alc+
      KOO21523.1 26 KVHASKIALRRGIALVRSELQQRRSPLVILSNTTSIKVHAS-KIALCR 72
                    444555569**********************9988666666.677776 PP

  == domain 2  score: 3.9 bits;  conditional E-value: 0.019
                     TEEEESHHHHHHHHHTTTESEEEEETT CS
  Ribosomal_L7Ae  14 gklvlGlkevtkalergeaklvilAed 40 
                       l++G+  v  +le+++  lvil + 
      KOO21523.1 104 IALRRGIALVRSELEQRRSPLVILGNT 130
                     3499*******************9765 PP

  == domain 3  score: -0.4 bits;  conditional E-value: 0.44
                     TEEEESHHHHHHHHHTTTESEEEEE CS
  Ribosomal_L7Ae  14 gklvlGlkevtkalergeaklvilA 38 
                     + l++G+  v  + e+++  l+il 
      KOO21523.1 140 QALRRGIALVRSEFEQRRSPLIILG 164
                     45999*************9999986 PP

  == domain 4  score: 4.3 bits;  conditional E-value: 0.014
                     EEEESHHHHHHHHHTTTESEEEEETTS CS
  Ribosomal_L7Ae  15 klvlGlkevtkalergeaklvilAedv 41 
                      l++G+  v  +le+++  lvil +++
      KOO21523.1 191 ALRRGIALVRSELEQRRSPLVILGHSA 217
                     499********************8876 PP

  == domain 5  score: 1.8 bits;  conditional E-value: 0.092
                     HTEEEESHHHHHHHHHTTTESEEEEETTSS CS
  Ribosomal_L7Ae  13 agklvlGlkevtkalergeaklvilAedve 42 
                     + kl+ G+  v  +le+ +  lvil + v+
      KOO21523.1 225 KFKLRHGIALVRSELEQCRSPLVILGHTVS 254
                     45799*******************988775 PP

  == domain 6  score: -2.2 bits;  conditional E-value: 1.6
                     EEESHHHHHHHHHTTTESEEEE CS
  Ribosomal_L7Ae  16 lvlGlkevtkalergeaklvil 37 
                     l++G+  v  +le+++   +il
      KOO21523.1 264 LRRGIALVRSELEQRRSPRIIL 285
                     7889999999999987776666 PP

>> DUF3747  Protein of unknown function (DUF3747)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.1   0.0     0.098   2.2e+02     121     170 ..       6      55 ..       2      60 .. 0.77
   2 !    5.2   0.0    0.0052        12     119     164 ..      76     121 ..      59     132 .. 0.87
   3 ?    3.4   0.0      0.02        44     117     164 ..     110     157 ..     106     167 .. 0.87
   4 ?    0.6   0.0      0.14   3.2e+02     117     160 ..     196     239 ..     188     252 .. 0.84
   5 ?    2.1   0.0     0.047   1.1e+02     117     164 ..     232     279 ..     226     289 .. 0.82

  Alignments for each domain:
  == domain 1  score: 1.1 bits;  conditional E-value: 0.098
     DUF3747 121 avpkrdrseseivigrtkglasgflkieLepgWrltkrtyegktlgHvYl 170
                   + ++ +++ +++++t+ ++    ki L+ g  l +   +++    v l
  KOO21523.1   6 RSELEQCRSPLVILSNTTSIKVHASKIALRRGIALVRSELQQRRSPLVIL 55 
                 5555566777789999999999999**99999999999999887655555 PP

  == domain 2  score: 5.2 bits;  conditional E-value: 0.0052
     DUF3747 119 LvavpkrdrseseivigrtkglasgflkieLepgWrltkrtyegkt 164
                 Lv  + ++r++++i++g+t+ ++    ki L+ g  l +   e++ 
  KOO21523.1  76 LVHSELQQRRSPRIILGHTESVTVHDSKIALRRGIALVRSELEQRR 121
                 66677789999***********************999998888775 PP

  == domain 3  score: 3.4 bits;  conditional E-value: 0.02
     DUF3747 117 lvLvavpkrdrseseivigrtkglasgflkieLepgWrltkrtyegkt 164
                 + Lv  + ++r+++ +++g+t+ ++   +k  L+ g  l +  +e++ 
  KOO21523.1 110 IALVRSELEQRRSPLVILGNTTSITVHACKQALRRGIALVRSEFEQRR 157
                 677888888899999*************************99999985 PP

  == domain 4  score: 0.6 bits;  conditional E-value: 0.14
     DUF3747 117 lvLvavpkrdrseseivigrtkglasgflkieLepgWrltkrty 160
                 + Lv  + ++r+++ +++g++  ++    k++L+ g  l +   
  KOO21523.1 196 IALVRSELEQRRSPLVILGHSASVTVHASKFKLRHGIALVRSEL 239
                 678888888899999999**************999988887665 PP

  == domain 5  score: 2.1 bits;  conditional E-value: 0.047
     DUF3747 117 lvLvavpkrdrseseivigrtkglasgflkieLepgWrltkrtyegkt 164
                 + Lv  + ++ +++ +++g+t  ++   +k+ L+ g  l +   e++ 
  KOO21523.1 232 IALVRSELEQCRSPLVILGHTVSITVHACKLALRRGIALVRSELEQRR 279
                 667777777888888999****************99999998888775 PP

>> CENP-H  Centromere protein H (CENP-H)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.5   0.0      0.17   3.8e+02      71      98 ..       5      32 ..       1      41 [. 0.91
   2 ?    6.5   0.2    0.0049        11      63     101 ..      33      71 ..      21      78 .. 0.83
   3 ?    2.6   0.0     0.076   1.7e+02      62      97 ..     104     139 ..      78     139 .. 0.81
   4 ?   -0.3   0.0      0.62   1.4e+03      64      97 ..     192     225 ..     184     227 .. 0.86
   5 ?    0.2   0.0      0.45     1e+03      63      97 ..     227     261 ..     204     263 .. 0.86
   6 ?   -1.3   0.0       1.3   2.9e+03      66      88 ..     266     288 ..     233     297 .] 0.54

  Alignments for each domain:
  == domain 1  score: 1.5 bits;  conditional E-value: 0.17
      CENP-H 71 leaelkksrqrwrvvknvasaiivgSgV 98
                +++el++ r+   ++ n++s  + +S++
  KOO21523.1  5 VRSELEQCRSPLVILSNTTSIKVHASKI 32
                7899**********************98 PP

  == domain 2  score: 6.5 bits;  conditional E-value: 0.0049
      CENP-H  63 klkeelekleaelkksrqrwrvvknvasaiivgSgVdWa 101
                  l++ ++ +++el++ r+   ++ n++s  + +S++  +
  KOO21523.1  33 ALRRGIALVRSELQQRRSPLVILSNTTSIKVHASKIALC 71 
                 467778899**************************9655 PP

  == domain 3  score: 2.6 bits;  conditional E-value: 0.076
      CENP-H  62 eklkeelekleaelkksrqrwrvvknvasaiivgSg 97 
                   l++ ++ +++el++ r+   ++ n++s  + +++
  KOO21523.1 104 IALRRGIALVRSELEQRRSPLVILGNTTSITVHACK 139
                 44778889999******************9998875 PP

  == domain 4  score: -0.3 bits;  conditional E-value: 0.62
      CENP-H  64 lkeelekleaelkksrqrwrvvknvasaiivgSg 97 
                 l++ ++ +++el++ r+   ++ + as  + +S+
  KOO21523.1 192 LRRGIALVRSELEQRRSPLVILGHSASVTVHASK 225
                 5667888999**************9999999997 PP

  == domain 5  score: 0.2 bits;  conditional E-value: 0.45
      CENP-H  63 klkeelekleaelkksrqrwrvvknvasaiivgSg 97 
                 kl++ ++ +++el++ r+   ++ +++s  + +++
  KOO21523.1 227 KLRHGIALVRSELEQCRSPLVILGHTVSITVHACK 261
                 57788899999****************99999886 PP

  == domain 6  score: -1.3 bits;  conditional E-value: 1.3
      CENP-H  66 eelekleaelkksrqrwrvvknv 88 
                 + ++ +++el++ r+   ++ ++
  KOO21523.1 266 RGIALVRSELEQRRSPRIILGHT 288
                 33444555555555555555555 PP

>> Cytadhesin_P30  Cytadhesin P30/P32
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.9   0.0     0.014        32      16      56 ..      27      68 ..       8      72 .. 0.84
   2 ?    4.0   0.1     0.014        31      17      57 ..      64     105 ..      58     110 .. 0.81
   3 ?    0.0   0.0      0.22     5e+02      16      51 ..      99     135 ..      94     144 .. 0.75
   4 ?    2.5   0.1     0.039        88      15      55 ..     184     225 ..     176     261 .. 0.82
   5 ?   -1.4   0.0      0.61   1.4e+03      16      44 ..     257     286 ..     231     295 .. 0.68

  Alignments for each domain:
  == domain 1  score: 3.9 bits;  conditional E-value: 0.014
  Cytadhesin_P30 16 vfsalivlatlvl.ltsevkselsptlvlheeetvsvqgkki 56
                    v ++ i+l  ++  ++se ++  sp ++l +  + +v++ ki
      KOO21523.1 27 VHASKIALRRGIAlVRSELQQRRSPLVILSNTTSIKVHASKI 68
                    5777899999986156**************999999999888 PP

  == domain 2  score: 4.0 bits;  conditional E-value: 0.014
  Cytadhesin_P30  17 fsalivlatl.vlltsevkselsptlvlheeetvsvqgkkit 57 
                      ++ i+l+ +  l++se ++  sp ++l   e+v+v+  ki+
      KOO21523.1  64 HASKIALCRGkTLVHSELQQRRSPRIILGHTESVTVHDSKIA 105
                     556677776526788**************9999999999986 PP

  == domain 3  score: 0.0 bits;  conditional E-value: 0.22
  Cytadhesin_P30  16 vfsalivlatlvl.ltsevkselsptlvlheeetvsv 51 
                     v  + i+l  ++  ++se  +  sp ++l +  + +v
      KOO21523.1  99 VHDSKIALRRGIAlVRSELEQRRSPLVILGNTTSITV 135
                     5667789998886156**********99976555554 PP

  == domain 4  score: 2.5 bits;  conditional E-value: 0.039
  Cytadhesin_P30  15 lvfsalivlatlvl.ltsevkselsptlvlheeetvsvqgkk 55 
                     +v  + i+l  ++  ++se  +  sp ++l    +v+v++ k
      KOO21523.1 184 MVHDSKIALRRGIAlVRSELEQRRSPLVILGHSASVTVHASK 225
                     56888899999986156*********9999888888887665 PP

  == domain 5  score: -1.4 bits;  conditional E-value: 0.61
  Cytadhesin_P30  16 vfsalivlatlvl.ltsevkselsptlvlh 44 
                     v ++ ++l  ++  ++se  +  sp ++l 
      KOO21523.1 257 VHACKLALRRGIAlVRSELEQRRSPRIILG 286
                     345556666666414588888888888874 PP

>> ThiC-associated  ThiC-associated domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.1   0.0      0.31   7.1e+02      58      78 ..      30      50 ..      25      53 .. 0.85
   2 ?    2.8   0.0     0.046     1e+02      15      77 ..      59     121 ..      52     124 .. 0.69
   3 ?    3.3   0.1     0.032        72      12      77 ..      92     157 ..      82     160 .. 0.73
   4 ?    2.1   0.0     0.078   1.8e+02      23      72 ..     189     238 ..     180     246 .. 0.66
   5 ?   -2.1   0.0       1.6   3.5e+03      58      77 ..     260     279 ..     255     280 .. 0.77

  Alignments for each domain:
  == domain 1  score: 0.1 bits;  conditional E-value: 0.31
                     S---TTT-S--TTHHHHHHTS CS
  ThiC-associated 58 veidvrkGLprlReaWieerg 78
                      +i +r+G++ +R++  ++r+
       KOO21523.1 30 SKIALRRGIALVRSELQQRRS 50
                     589999*******99888875 PP

  == domain 2  score: 2.8 bits;  conditional E-value: 0.046
                      TT-EEEEEEE---GG.........G----EEEE---GGGG-TTS---TTT-S--TTHHHHHHT CS
  ThiC-associated  15 pdirVpmreiklsptvlketkekeeenepvrvYDtSGpYtdpeveidvrkGLprlReaWieer 77 
                       +i+V   +i+l   ++  ++e +++ +p  +   +   t  + +i +r+G++ +R++  ++r
       KOO21523.1  59 TSIKVHASKIALCRGKTLVHSELQQRRSPRIILGHTESVTVHDSKIALRRGIALVRSELEQRR 121
                      678888888888877666664444444444444444556888899999999999999877766 PP

  == domain 3  score: 3.3 bits;  conditional E-value: 0.032
                      -SSTT-EEEEEEE---GG.........G----EEEE---GGGG-TTS---TTT-S--TTHHHHHHT CS
  ThiC-associated  12 gsrpdirVpmreiklsptvlketkekeeenepvrvYDtSGpYtdpeveidvrkGLprlReaWieer 77 
                      g+++++ V   +i+l   +   ++e e++ +p+ +   +   t  + +  +r+G++ +R+++ ++r
       KOO21523.1  92 GHTESVTVHDSKIALRRGIALVRSELEQRRSPLVILGNTTSITVHACKQALRRGIALVRSEFEQRR 157
                      455667777777777777666666666777788887777788888888889999999998887777 PP

  == domain 4  score: 2.1 bits;  conditional E-value: 0.078
                      EE---GG.........G----EEEE---GGGG-TTS---TTT-S--TTHH CS
  ThiC-associated  23 eiklsptvlketkekeeenepvrvYDtSGpYtdpeveidvrkGLprlRea 72 
                      +i+l   +   ++e e++ +p+ +   S   t  + ++ +r+G++ +R++
       KOO21523.1 189 KIALRRGIALVRSELEQRRSPLVILGHSASVTVHASKFKLRHGIALVRSE 238
                      45555554444444456677777777777778888888888888888876 PP

  == domain 5  score: -2.1 bits;  conditional E-value: 1.6
                      S---TTT-S--TTHHHHHHT CS
  ThiC-associated  58 veidvrkGLprlReaWieer 77 
                       ++ +r+G++ +R++  ++r
       KOO21523.1 260 CKLALRRGIALVRSELEQRR 279
                      57789999999998876665 PP

>> PrgH  Type III secretion system protein PrgH-EprH (PrgH)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.2   0.1    0.0049        11     201     258 ..       3      62 ..       2      72 .. 0.78
   2 ?    1.1   0.0     0.086   1.9e+02     201     251 ..     111     163 ..      83     171 .. 0.61
   3 ?    1.1   0.0     0.087     2e+02     162     217 ..     197     249 ..     176     295 .. 0.49

  Alignments for each domain:
  == domain 1  score: 5.2 bits;  conditional E-value: 0.0049
                 HHHHTTCTTT..EEEEEHHHHHHHHHHHHHHHSTTSXEEEEETSSTTSXEEEEETTTXXX CS
        PrgH 201 allraelake..vevvslddererveqwLdeeypnvdyyrlklddpaepeLilsrergel 258
                 al+r el+++  + v+ ++ ++ +v++   + + +++++r +l++ ++p +ils+ ++  
  KOO21523.1   3 ALVRSELEQCrsPLVILSNTTSIKVHASKIALRRGIALVRSELQQRRSPLVILSNTTSIK 62 
                 68899999984456777888888888765555689******************9886654 PP

  == domain 2  score: 1.1 bits;  conditional E-value: 0.086
                 HHHHTTCTTT..EEEEEHHHHHHHHHHHHHHHSTTSXEEEEETSSTTSXEEEE CS
        PrgH 201 allraelake..vevvslddererveqwLdeeypnvdyyrlklddpaepeLil 251
                 al+r el+++  + v+  + ++  v++  ++ + +++++r ++++ ++p +il
  KOO21523.1 111 ALVRSELEQRrsPLVILGNTTSITVHACKQALRRGIALVRSEFEQRRSPLIIL 163
                 45555555552233333444455555555555556666666666666666665 PP

  == domain 3  score: 1.1 bits;  conditional E-value: 0.087
                 HHHHHHSGGGTTTEEEEEXTTSXEEEEESSHHHHHHHHHHHHHTTCTTTEEEEEHH CS
        PrgH 162 aelaavldddkarvelLpgrdgklYvlAktqrdaewarqallraelakevevvsld 217
                 a + + l++ +++ ++L  +  ++ v A++ +       al+r el++++  +++ 
  KOO21523.1 197 ALVRSELEQRRSPLVILG-HSASVTVHASKFK--LRHGIALVRSELEQCRSPLVIL 249
                 444444444444444433.3333333333332..2223345555555554433333 PP

>> Poty_PP  Potyviridae polyprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.2   0.2     0.017        38     146     208 ..      21      83 ..       5      90 .. 0.84
   2 ?   -1.3   0.0       0.4   8.9e+02     157     192 ..     104     139 ..      89     163 .. 0.63
   3 ?    3.3   0.0     0.016        36     157     206 ..     190     239 ..     182     248 .. 0.88
   4 ?   -1.4   0.0      0.43   9.6e+02     148     182 ..     253     287 ..     239     295 .. 0.79

  Alignments for each domain:
  == domain 1  score: 3.2 bits;  conditional E-value: 0.017
     Poty_PP 146 skiAlklstdeksvgrtlliveelLveerskleqlkhlvsesvgsylvgilalnyclraryak 208
                 +++ +k++  + ++ r + +v  +L++ rs l  l   +s +v  ++  ++  +  + + +++
  KOO21523.1  21 NTTSIKVHASKIALRRGIALVRSELQQRRSPLVILSNTTSIKVHASKIALCRGKTLVHSELQQ 83 
                 567888999999999****************99999999999999999999888777777665 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 0.4
     Poty_PP 157 ksvgrtlliveelLveerskleqlkhlvsesvgsyl 192
                  ++ r + +v  +L++ rs l  l   +s +v   +
  KOO21523.1 104 IALRRGIALVRSELEQRRSPLVILGNTTSITVHACK 139
                 456677777777777777766655555554444444 PP

  == domain 3  score: 3.3 bits;  conditional E-value: 0.016
     Poty_PP 157 ksvgrtlliveelLveerskleqlkhlvsesvgsylvgilalnyclrary 206
                  ++ r + +v  +L++ rs l  l h  s +v  +++ + +    +r+ +
  KOO21523.1 190 IALRRGIALVRSELEQRRSPLVILGHSASVTVHASKFKLRHGIALVRSEL 239
                 578899*******************************9999988888865 PP

  == domain 4  score: -1.4 bits;  conditional E-value: 0.43
     Poty_PP 148 iAlklstdeksvgrtlliveelLveerskleqlkh 182
                 + ++++  + ++ r + +v  +L++ rs +  l h
  KOO21523.1 253 VSITVHACKLALRRGIALVRSELEQRRSPRIILGH 287
                 55566666778999999*******99998877766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (297 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       272  (0.015171); expected 358.6 (0.02)
Passed bias filter:                      233  (0.0129957); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.51u 0.28s 00:00:00.79 Elapsed: 00:00:00.44
# Mc/sec: 2044.37
//
Query:       KOO21524.1  [L=360]
Description: sel1 domain protein repeat-containing protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.1e-30  105.4  37.6      6e-08   33.1   0.9    6.2  7  Sel1           Sel1 repeat
  ------ inclusion threshold ------
      0.052   12.9   0.8        9.6    5.5   0.1    3.5  3  PPR_long       Pentacotripeptide-repeat region of PRORP


Domain annotation for each model (and alignments):
>> Sel1  Sel1 repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   0.2   1.3e-06     0.011      14      38 .]     144     168 ..     139     168 .. 0.92
   2 !   26.2   1.3   9.7e-10   8.7e-06       1      38 []     169     204 ..     169     204 .. 0.97
   3 !   23.2   0.8   8.7e-09   7.8e-05       1      37 [.     205     239 ..     205     240 .. 0.96
   4 !   31.4   1.0   2.2e-11     2e-07       1      38 []     241     276 ..     241     276 .. 0.97
   5 !   33.1   0.9   6.7e-12     6e-08       1      38 []     277     312 ..     277     312 .. 0.97
   6 ?   -2.5   0.1       1.1   9.9e+03      29      37 ..     317     325 ..     316     326 .. 0.81
   7 ?   -1.2   0.1      0.42   3.8e+03       1       9 [.     327     335 ..     327     338 .. 0.81

  Alignments for each domain:
  == domain 1  score: 16.4 bits;  conditional E-value: 1.3e-06
        Sel1  14 lnGlgvpkDpekAiewyekAAeqGd 38 
                 ++G+gv +D ++A  ++++AA+qGd
  KOO21524.1 144 WDGRGVAQDDKRAAALFKLAADQGD 168
                 68**********************7 PP

  == domain 2  score: 26.2 bits;  conditional E-value: 9.7e-10
        Sel1   1 aeAmyrLGmfylylnGlgvpkDpekAiewyekAAeqGd 38 
                 a+A++ L+   ++ +G+gv +D ++A  ++++AA+qGd
  KOO21524.1 169 AAAQCLLA--RMHRDGRGVAQDDKRAAALFKLAADQGD 204
                 68******..999************************7 PP

  == domain 3  score: 23.2 bits;  conditional E-value: 8.7e-09
        Sel1   1 aeAmyrLGmfylylnGlgvpkDpekAiewyekAAeqG 37 
                 a+A+++LG   ++ +Glgv +D+ +A  ++++A +qG
  KOO21524.1 205 AAAQCNLG--VMHRDGLGVAQDYARAAALLKLAVDQG 239
                 68******..999***********************9 PP

  == domain 4  score: 31.4 bits;  conditional E-value: 2.2e-11
        Sel1   1 aeAmyrLGmfylylnGlgvpkDpekAiewyekAAeqGd 38 
                 a+A+++LG  +++l+G+gv +D ++A  ++++AA+qGd
  KOO21524.1 241 AAAQCNLG--CMHLDGRGVAQDDKRAAALLKLAADQGD 276
                 68******..999************************7 PP

  == domain 5  score: 33.1 bits;  conditional E-value: 6.7e-12
        Sel1   1 aeAmyrLGmfylylnGlgvpkDpekAiewyekAAeqGd 38 
                 a+A+++LG  +++l+G+gv +D ++A  ++++AA+qGd
  KOO21524.1 277 AAAQCNLG--CMHLDGRGVAQDDKRAAALFKLAADQGD 312
                 68******..999************************7 PP

  == domain 6  score: -2.5 bits;  conditional E-value: 1.1
        Sel1  29 wyekAAeqG 37 
                 ++++AA qG
  KOO21524.1 317 LLKLAAHQG 325
                 689999998 PP

  == domain 7  score: -1.2 bits;  conditional E-value: 0.42
        Sel1   1 aeAmyrLGm 9  
                 aeA+ +LG 
  KOO21524.1 327 AEAQRQLGN 335
                 79******3 PP

>> PPR_long  Pentacotripeptide-repeat region of PRORP
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.5   0.1    0.0045        41     141     176 ..     170     205 ..     123     243 .. 0.62
   2 ?    5.5   0.1    0.0011       9.6     143     176 ..     244     277 ..     179     283 .. 0.68
   3 ?    0.6   0.0     0.033     3e+02     150     175 ..     287     312 ..     278     324 .. 0.82

  Alignments for each domain:
  == domain 1  score: 3.5 bits;  conditional E-value: 0.0045
                 HHHHHHHHHHHHHCT----HHHHHHHHHHHHHTT-H CS
    PPR_long 141 adkaleveehlkasgveleEaelaaLLkvsakagre 176
                 a ++l +  h +  gv+ +++  aaL k++a++g++
  KOO21524.1 170 AAQCLLARMHRDGRGVAQDDKRAAALFKLAADQGDA 205
                 234444444445555555555555555555555544 PP

  == domain 2  score: 5.5 bits;  conditional E-value: 0.0011
                 HHHHHHHHHHHCT----HHHHHHHHHHHHHTT-H CS
    PPR_long 143 kaleveehlkasgveleEaelaaLLkvsakagre 176
                 ++     hl+  gv+ +++  aaLLk++a++g++
  KOO21524.1 244 QCNLGCMHLDGRGVAQDDKRAAALLKLAADQGDA 277
                 4555557999999999999********9999997 PP

  == domain 3  score: 0.6 bits;  conditional E-value: 0.033
                 HHHHCT----HHHHHHHHHHHHHTT- CS
    PPR_long 150 hlkasgveleEaelaaLLkvsakagr 175
                 hl+  gv+ +++  aaL k++a++g+
  KOO21524.1 287 HLDGRGVAQDDKRAAALFKLAADQGD 312
                 88888999999999999999888886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (360 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       337  (0.0187964); expected 358.6 (0.02)
Passed bias filter:                      177  (0.00987227); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.47u 0.27s 00:00:00.74 Elapsed: 00:00:00.44
# Mc/sec: 2445.86
//
Query:       KOO21525.1  [L=400]
Description: hypothetical protein Ctob_001904 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.5e-07   31.4   0.2    7.1e-07   30.0   0.1    1.9  2  Metallophos_C    Iron/zinc purple acid phosphatase-like prote
    1.2e-06   29.0   0.2    2.7e-06   27.8   0.2    1.6  1  Pur_ac_phosph_N  Purple acid Phosphatase, N-terminal domain
    2.5e-06   28.2   2.2     0.0003   21.3   2.2    2.2  1  Metallophos      Calcineurin-like phosphoesterase


Domain annotation for each model (and alignments):
>> Metallophos_C  Iron/zinc purple acid phosphatase-like protein C
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.8   0.0         3   1.8e+04      49      56 ..     243     250 ..     236     255 .. 0.69
   2 !   30.0   0.1   1.2e-10   7.1e-07       1      63 []     333     394 ..     333     394 .. 0.86

  Alignments for each domain:
  == domain 1  score: -3.8 bits;  conditional E-value: 3
  Metallophos_C  49 lwefvrss 56 
                    +w++v+++
     KOO21525.1 243 QWKWVAAD 250
                    68888874 PP

  == domain 2  score: 30.0 bits;  conditional E-value: 1.2e-10
  Metallophos_C   1 ApvhiviGaAGndegdafkgeppqpews.afr..stdyGygrltvhNathLlwefvrssdgkviDs 63 
                    + ++i++G+AG++ +    +e+  p  s +      ++G g+lt++N+++L+w+f++ ++ kv+Ds
     KOO21525.1 333 GITYITVGTAGATVH----NETMLPGTSgVLKgwRVEWGLGILTAVNRSALRWDFYSIAEAKVVDS 394
                    679********9988....345677888444478899*********************999****7 PP

>> Pur_ac_phosph_N  Purple acid Phosphatase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.8   0.2   4.5e-10   2.7e-06      16      94 .]       1      99 [.       1      99 [. 0.87

  Alignments for each domain:
  == domain 1  score: 27.8 bits;  conditional E-value: 4.5e-10
  Pur_ac_phosph_N 16 mtvsWitpe....ktkksvvrygtssdalestaeatsstyet................tnyksgyshkatltgLepgttYyYrvgddeggwSevys 91
                     m+ sW  ++    + + + vr+g +++ +++++ a++  +++                +    gy  ++++tgL+pgt+Yy   g+ +gg+  + +
       KOO21525.1  1 MWLSWSVDTnatgAGGVPRVRVGVTPGVYTREVVASQPMTSYaasdmcgkhanetdiaKYLFPGYFANVLITGLAPGTRYYATYGSLDGGFATETT 96
                     788999877333344556**************999987666788**********999777789************************999****** PP

  Pur_ac_phosph_N 92 fkT 94
                     f+T
       KOO21525.1 97 FTT 99
                     *98 PP

>> Metallophos  Calcineurin-like phosphoesterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.3   2.2   5.1e-08    0.0003      60     202 ..     176     307 ..     109     308 .. 0.63

  Alignments for each domain:
  == domain 1  score: 21.3 bits;  conditional E-value: 5.1e-08
                  HHHHTSEEEEEC-TTSCHHHHHHHHHHHHHHHHHHHEHHHCEEETSEEEEEETTEEEEEEEESECEEE..THHHHHHHHHHHSCHHHHCC........ CS
  Metallophos  60 lvkypipvylllGNHegfeeellnkygylgifsepwrsdaevfnnlplaslgsgslkvlllhGgspel..lvsldklgslnleleapepg........ 147
                  +++                             ++ w  d++  +++  ++        + ++Gg++++  +  + +++  + +    +++        
   KOO21525.1 176 KIP-----------------------------NGEWGEDSDGEGGVATWARFRS--PGVGVPGGTAPRgnSIYWYSWDMGSVHVVMLDSEhnmtkgsp 242
                  333.............................3334444444444444444444..566677775555553344444444444444444444455555 PP

                  .HHHHHH...HHHHTTCSEEEEEESSESS..CSSSCSCCHHHHH....HHHHHTTESEEEEESSS CS
  Metallophos 148 .dewlkd...lekrekadwvivlgHsply..rgsgylfgdeale....dllkkygvdlvisGHtH 202
                   ++w +     ++r+ ++ v+v +H+pl   + ++++   e ++    +l+  +gv +v++GH+H
   KOO21525.1 243 qWKWVAAdlaAVDRTMTPHVVVTQHRPLFttEAGSQYDVAELMRadlePLFHAHGVVAVLGGHIH 307
                  5****************************9755555555555558888***************** PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (400 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       271  (0.0151152); expected 358.6 (0.02)
Passed bias filter:                      236  (0.013163); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.45u 0.25s 00:00:00.70 Elapsed: 00:00:00.40
# Mc/sec: 3002.89
//
Query:       KOO21526.1  [L=854]
Description: zeta toxin, partial [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.6e-16   60.2   0.0    7.8e-16   58.0   0.0    1.8  2  Zeta_toxin  Zeta toxin
    2.4e-05   24.5   0.0    6.8e-05   23.1   0.0    1.7  2  AAA_33      AAA domain


Domain annotation for each model (and alignments):
>> Zeta_toxin  Zeta toxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.1   0.0     0.046   4.1e+02      55      94 ..     363     402 ..     358     406 .. 0.90
   2 !   58.0   0.0   8.6e-20   7.8e-16      12     173 ..     405     568 ..     395     581 .. 0.86

  Alignments for each domain:
  == domain 1  score: 0.1 bits;  conditional E-value: 0.046
  Zeta_toxin  55 RelhPeyeeilkadpkkaseltqkdaselvekllqeaien 94 
                 Re++  y++i++  ++++  +  k+ +e+++++++ ++++
  KOO21526.1 363 REFYGPYAGIRARVDYSYHTNYTKERQEWQDRAIDSVVNR 402
                 7888889*****99*********************99876 PP

  == domain 2  score: 58.0 bits;  conditional E-value: 8.6e-20
  Zeta_toxin  12 sqerPklillgGqpGAGKselaellkdele.rqgnvvrldpDdlRelhPeyeeilka..dpkkaseltqkdaselvekllqeaiengyniivegtlrsp 107
                 +  +P ++   G  GAGK+++++ + ++   + +++v++dpD+++el Pe ++ ++      ka ++ ++++  l+e + + a+   +n+ v+g lr+ 
  KOO21526.1 405 PVANPWVVYTCGPMGAGKGYVISWMSKNGIfPLEDIVHIDPDHFKELMPEWAAYMERpyTAPKAGDMCHRESAFLQEIAQEIAMRSSQNVWVDGSLRDG 503
                 5688999999*************88888777**********************99965578899*********************************** PP

  Zeta_toxin 108 dvvkklaealkka..GYevevvvvavkkelSrlgvldRyeeevaegRlvpkeehdeafeglresveal 173
                 +++ +  ++l+ +   Y++ ++ v +++ + r +v+ R e +   gR+vp+  + e+ + +++++e l
  KOO21526.1 504 SWFTRVFRDLRRRfpRYKLAILEVGASESVVRYRVARRAELT---GRMVPEHLILESLRSVASTLELL 568
                 ***********8722466666677777777778888888888...*******9999999998888765 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.1   0.0   7.6e-09   6.8e-05       1     123 [.     411     546 ..     411     563 .. 0.74
   2 ?   -3.7   0.0       1.4   1.2e+04      83     105 ..     683     705 ..     679     706 .. 0.80

  Alignments for each domain:
  == domain 1  score: 23.1 bits;  conditional E-value: 7.6e-09
      AAA_33   1 lvllvGlpGsGKstlaerllkklg......avllssdtlrrrlfg....tdqq.sktdytrvldrlyqilnelarkal.sagrnvildatnlsrrer.. 85 
                 +v+++G+ G+GK +++  ++ k+g       v+++ d +++ + +     +++ +  +  +  +r  ++l+e+a++ + ++ +nv +d  +++ + +  
  KOO21526.1 411 VVYTCGPMGAGKGYVIS-WMSKNGifpledIVHIDPDHFKELMPEwaayMERPyTAPKAGDMCHRESAFLQEIAQEIAmRSSQNVWVDGSLRDGSWFtr 508
                 89***********9998.67788999999*********9988888876533331222333455667779999999877477788999999999777732 PP

      AAA_33  86 ..arflklarrlgvpvrivvvetdeetlkeRlakRaangd 123
                   +++++ ++   ++ +i+ v ++e++ + R+a+Ra+ ++
  KOO21526.1 509 vfRDLRRRFP--RYKLAILEVGASESVVRYRVARRAELTG 546
                 2244444444..45589******************99754 PP

  == domain 2  score: -3.7 bits;  conditional E-value: 1.4
      AAA_33  83 rerarflklarrlgvpvrivvve 105
                 +e   + ++ +r+g p ++v+++
  KOO21526.1 683 HEITLLAEARERAGIPSHAVWFS 705
                 67777788889999999999985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (854 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       515  (0.0287244); expected 358.6 (0.02)
Passed bias filter:                      462  (0.0257683); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.65u 0.24s 00:00:00.89 Elapsed: 00:00:00.41
# Mc/sec: 6302.12
//
Query:       KOO21527.1  [L=598]
Description: protein isoform a [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    4.4e-21   75.2  28.8    5.8e-15   55.1  19.6    2.3  2  MFS_1        Major Facilitator Superfamily
    0.00086   18.3   8.8      0.065   12.1   4.9    2.3  2  Sugar_tr     Sugar (and other) transporter
     0.0043   16.0   3.9      0.093   11.6   0.3    2.6  3  MFS_1_like   MFS_1 like family


Domain annotation for each model (and alignments):
>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.1  19.6   9.7e-19   5.8e-15      18     163 ..      30     174 ..       6     298 .. 0.69
   2 !   24.3   3.3   2.1e-09   1.3e-05       8      81 ..     287     361 ..     277     368 .. 0.77

  Alignments for each domain:
  == domain 1  score: 55.1 bits;  conditional E-value: 9.7e-19
       MFS_1  18 alplalaedlg........ispseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllllfa......sslw.lllvlrvlqGlgaga 101
                 +                  +sp +ig +++++ ++ +++++ ++rl+dr+G r ++l+g ++ ++g+l ++ a      +++  + +v+r+lqG+g+++
  KOO21527.1  30 F---------FpqqaeaklLSPEAIGAIFAAFPAVVFLTAPSASRLMDRIGTRTTFLVGCFAISIGTLSFSAAlilpdgAPFAaWCMVMRLLQGAGGAL 119
                 3.........13333333389******************************************999444443244678899**9************999 PP

       MFS_1 102 lfpagaaliadwfpkeergraigllsagfslGailgpllggllasslgWravfyilaivsll 163
                   +++++lia ++   + ++++gl  ++++lG++lgp++g++la      a+ ++la  +++
  KOO21527.1 120 EEASAYVLIASLAGS-NVTFYLGLTELSTGLGYMLGPPIGAVLA------ACALLLASYAAF 174
                 999999999999998.***************************9......333333333333 PP

  == domain 2  score: 24.3 bits;  conditional E-value: 2.1e-09
       MFS_1   8 salarsilgpalpl.alaedlgispseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllll.f 81 
                 +  ++++l p+l   ala+   ++++ +gll+++ +l++ ++ +++G  s r+G rr++l+gl + al+ +++l +
  KOO21527.1 287 ANSDYAFLEPTLGDhALANGQAADADGVGLLFGISSLAYTLSCPLAGMCSHRIGTRRTILIGLCMQALA-FIALvL 361
                 444445555555555555556688999******************************************.555524 PP

>> Sugar_tr  Sugar (and other) transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.1   4.9   1.1e-05     0.065      48     353 ..      45     108 ..       2     176 .. 0.57
   2 !    7.8   0.1   0.00022       1.3      50     334 ..     316     359 ..     276     372 .. 0.64

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 1.1e-05
                 HHHHHHTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH-TTTTSS-TGGGGGHHHHHHHHHHHHHHHHHHHHTTS-SCCHHHHHHHHHHH CS
    Sugar_tr  48 sglivsiflvGaiiGslfagllgdrfGRkkslliaavlfvigavlqaaakgknsvevlivgRvlvGigvGlasvlvPmyisEiApkklRgalvslyqla 146
                 +g+i+++f ++ ++++  a                                                                                
  KOO21527.1  45 IGAIFAAFPAVVFLTAPSA-------------------------------------------------------------------------------- 63 
                 4444444444444444444................................................................................ PP

                 HHHHHHHHHHHHHHHHTSS-TTHHHHHHHCCHHHHHHHHHHGGGS---HHHHHHTT-HHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH.....HTTH CS
    Sugar_tr 147 itfGilvaaifglglnktsnadgwrillglqlvpallllilllflPESPrylvekgkeeeakevlaklrgeedadrelaeekdsleaeqeeekaswkel 245
                                                                                                                    
  KOO21527.1   - ---------------------------------------------------------------------------------------------------   -
                 ................................................................................................... PP

                 HHHSH...HHHHHHHHHHHHHHTTHHHHHHHTTTHHHHSS-THHHHHHHHHHHHHHHHHHHHHHHHHHS-SHHHHHHHHHHHHHHHHHHH..HHHHTTS CS
    Sugar_tr 246 lssktvrqrlligvvlqifqqltGinaimyysptifenlglsksllvtiivgvvnfvatfvaiflvdrfGRRtllllGaagmaicfvilgivalllvak 344
                                                                                 l+dr+G Rt++l+G++  +i ++ ++ +al+l+++
  KOO21527.1  64 --------------------------------------------------------------SRLMDRIGTRTTFLVGCFAISIGTLSFS-AALILPDG 99 
                 ..............................................................5666666666666666666666666665.55555555 PP

                 S...CHHHH CS
    Sugar_tr 345 skaasivai 353
                    a+ +++
  KOO21527.1 100 APFAAWCMV 108
                 422222222 PP

  == domain 2  score: 7.8 bits;  conditional E-value: 0.00022
                 HHHHTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH-TTTTSS-TGGGGGHHHHHHHHHHHHHHHHHHHHTTS-SCCHHHHHHHHHHHHH CS
    Sugar_tr  50 livsiflvGaiiGslfagllgdrfGRkkslliaavlfvigavlqaaakgknsvevlivgRvlvGigvGlasvlvPmyisEiApkklRgalvslyqlait 148
                 l+++i ++  ++++ +ag                                                                                 
  KOO21527.1 316 LLFGISSLAYTLSCPLAG--------------------------------------------------------------------------------- 333
                 445555555555555555................................................................................. PP

                 HHHHHHHHHHHHHHTSS-TTHHHHHHHCCHHHHHHHHHHGGGS---HHHHHHTT-HHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH.....HTTHHH CS
    Sugar_tr 149 fGilvaaifglglnktsnadgwrillglqlvpallllilllflPESPrylvekgkeeeakevlaklrgeedadrelaeekdsleaeqeeekaswkells 247
                                                                                                                    
  KOO21527.1   - ---------------------------------------------------------------------------------------------------   -
                 ................................................................................................... PP

                 HSH...HHHHHHHHHHHHHHTTHHHHHHHTTTHHHHSS-THHHHHHHHHHHHHHHHHHHHHHHHHHS-SHHHHHHHHHHHHHHHHHH CS
    Sugar_tr 248 sktvrqrlligvvlqifqqltGinaimyysptifenlglsksllvtiivgvvnfvatfvaiflvdrfGRRtllllGaagmaicfvil 334
                                                                              +++ r+G R++ l+G++++a++f+ l
  KOO21527.1 334 -------------------------------------------------------------MCSHRIGTRRTILIGLCMQALAFIAL 359
                 .............................................................55555555555555555555555444 PP

>> MFS_1_like  MFS_1 like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.6   0.3   1.5e-05     0.093      29      86 ..      38      97 ..      23     101 .. 0.80
   2 ?   -0.8   1.1     0.091   5.4e+02     295     371 ..      85     159 ..      81     178 .. 0.71
   3 !    4.4   0.0    0.0023        14      33      84 ..     311     361 ..     304     392 .. 0.85

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 1.5e-05
  MFS_1_like 29 kglkaseigiitlilpltsilsppiwgvlaDrfgkrkkvvi..lslllsavlflsllfip 86
                k l+++ ig i ++ p++ +l +p  + l Dr+g r++ ++  +++ + +++f++ l++p
  KOO21527.1 38 KLLSPEAIGAIFAAFPAVVFLTAPSASRLMDRIGTRTTFLVgcFAISIGTLSFSAALILP 97
                5599*********************************96651144445556666666555 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 0.091
  MFS_1_like 295 iallayilrfllyaiienawlvlpievLhgisfgllwaaaveyvskiapksleatgqgllsglyfglGralGsliGG 371
                 i+ l++ + ++l      a +++++ +L+g+  +l  a+a   ++ +a  s  +++ gl + l+ glG  lG  iG 
  KOO21527.1  85 IGTLSFSAALILPDGAPFAAWCMVMRLLQGAGGALEEASAYVLIASLA-GSNVTFYLGLTE-LSTGLGYMLGPPIGA 159
                 566666666666666677889999999999999998777777777555.566799999864.557777777766663 PP

  == domain 3  score: 4.4 bits;  conditional E-value: 0.0023
  MFS_1_like  33 aseigiitlilpltsilsppiwgvlaDrfgkrkkvvilslllsavlflsllf 84 
                 a  +g++  i  l   ls p+ g+ + r+g r +++i +l+++a++f++l++
  KOO21527.1 311 ADGVGLLFGISSLAYTLSCPLAGMCSHRIGTRRTILI-GLCMQALAFIALVL 361
                 5679***************************999765.66667777776664 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (598 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       417  (0.0232584); expected 358.6 (0.02)
Passed bias filter:                      261  (0.0145574); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.55u 0.27s 00:00:00.82 Elapsed: 00:00:00.40
# Mc/sec: 4454.50
//
Query:       KOO21528.1  [L=563]
Description: kinesin motor domain containing protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.5e-37  128.5   0.0    4.2e-37  127.8   0.0    1.4  1  Kinesin         Kinesin motor domain
    1.3e-10   41.4   0.0    2.2e-10   40.7   0.0    1.4  1  Microtub_bd     Microtubule binding
  ------ inclusion threshold ------
      0.049   13.5   0.1       0.11   12.3   0.1    1.5  1  Bac_DnaA        Bacterial dnaA  protein
        7.2    6.4   6.1         22    4.8   6.1    1.8  1  Chon_Sulph_att  Chondroitin sulphate attachment domain


Domain annotation for each model (and alignments):
>> Kinesin  Kinesin motor domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  127.8   0.0   9.4e-41   4.2e-37       1     331 [.     107     468 ..     107     470 .. 0.80

  Alignments for each domain:
  == domain 1  score: 127.8 bits;  conditional E-value: 9.4e-41
                 EE-SSSHHHHTTTTEBCEEEEC..........TCTCEEEEEEEEECTTSCEEEEESE.EEETTS-HHHHHHHHHHHHHHHHH.......TTSEEEEEEE CS
     Kinesin   1 RvRplnekekeeeeeeevevee..........ekkeeekkskkenkeeeekkfkFdk.vfdeeatqeevyeetakplvesvl.......eGynatifaY 81 
                 R+Rpl ++  +++e e v+             e +        ++ + ++++++F + ++++e+ q+ev e +a++lv++v        eGyna++faY
  KOO21528.1 107 RIRPLASSGGHSNEGEPVSKRLasygngkivlEDEMGVDYGGARAAHARTTEYTFAQaILGPESRQAEVHEAAAAELVQAVCadglnggEGYNALLFAY 205
                 5666666666655555554433566666666555555666677889999******8626788999**************997555555569******** PP

                 ESTTSSHHHHHTBC.......TTTSBSHHHHHHHHHHHHHHHCTTTHEEEEEEEEEEEEEETTEEEETTSTTTTSTSSEBEEEECTTSCCEEETTS--E CS
     Kinesin  82 GqtgsGKTyTmegk.......eeeeeGiipraleelFesikkekeekekefsvkvsylEiYneeiyDLLeskkskkkkklkiredskkgevyvkgltev 173
                 Gqtg+GKT+T+ g        ++e++Gi+pra++++ ++++++  +   +  +++s lE Y+ ++ DLL++       +  i  d++       g t+ 
  KOO21528.1 206 GQTGTGKTHTIFGPepswtslRHEQSGILPRAVASILDTMRARAGR--ISSVLSCSALEFYMSSCLDLLDEG-----ATCLIGADHRP-----LGFTTL 292
                 *********************9999***************998877..999*******************99.....34567777764.....49**** PP

                 EESSHHHHHHHHHHHHHHHTSTTSSCTSH......HCCSEEEEEEEEEEEETTTTTCEEEEEEEEEEEEEEECCCHHHHSS...........TCHHHHH CS
     Kinesin 174 evksaeevlellekgeknrkvaetklnee......SSRSHavftitleqknlkeeteekvkisklnLvDLAGsErasktga...........aegerlk 255
                 e++s + +l+l+++ +k r+  +t++ne+      SSRSH+ + +tl+q ++++    +v +++l  +D+AG Er ++ ++            e +   
  KOO21528.1 293 ELDSEQACLDLMARVRKTRHARATRMNEAsdghagSSRSHCAIILTLRQLERSSA---RVLTTRLDVIDMAGAERPRSVQStllamwdhekgVEPTIAG 388
                 ***************************973444446*************998843...46999************887766556554332222233355 PP

                 HHHHHHHHHHHHHHHHHHHHHTCCTSTSCGGGSHH..HHHT...GGGHSSSSEEEEEEEE-TBGGGHHHHHHHHHHHHHHC CS
     Kinesin 256 EaaniNkSLlaLgrvisaLaekkkskhipYRdSkL..TrlL...qdsLgGnsktlmivtvspssenleetlstlkfaerak 331
                  +  iN  L+ L++ + + +e+ + k  p  + k   T+ +   + +++G++   mivt+sp++++  et  + +++e  +
  KOO21528.1 389 QGLVINYELSQLRTAVVQATEQ-HYKGLPLVNTKAagTEFIeytKGCFDGSALLSMIVTLSPAHSCGWETWFSCTYGEDLQ 468
                 6788********9988888888.688888888885445555222789****************************998765 PP

>> Microtub_bd  Microtubule binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.7   0.0   4.9e-14   2.2e-10      44     149 .]     151     272 ..     104     272 .. 0.81

  Alignments for each domain:
  == domain 1  score: 40.7 bits;  conditional E-value: 4.9e-14
                  ...TTTEEEE-SE.EEECTTHCCCCCCCC.HHHHHHHH.T......T--EEEEEEES........................ST-HCHHHHHHHHHHCC CS
  Microtub_bd  44 eekkkkkefsFdr.vfeseseqeevfeei.sqlvqsal.d......gynvcifaygqTGsGKtyTmeg........eeeeagmipraveeifetisel 124
                    + ++ e++F + ++ +es q+ev+e   + lvq +  d      gyn  +faygqTG GKt+T+ g        ++e++g +prav +i++t++ +
   KOO21528.1 151 AAHARTTEYTFAQaILGPESRQAEVHEAAaAELVQAVCaDglnggeGYNALLFAYGQTGTGKTHTIFGpepswtslRHEQSGILPRAVASILDTMRAR 248
                  5567788999977367899999999987514677765435333333699******************999999999999*****************99 PP

                  TSCCCCEEEEEEEEEEESS-EEETT CS
  Microtub_bd 125 kekgwkyeielqfveiynekvqDlL 149
                      ++  ++++ +e+y  +  DlL
   KOO21528.1 249 -AGRISSVLSCSALEFYMSSCLDLL 272
                  .6799999***********999998 PP

>> Bac_DnaA  Bacterial dnaA  protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.1   2.5e-05      0.11       4      50 ..     158     215 ..     156     220 .. 0.66

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 2.5e-05
                 S-SGGG----TTTHHHH...HHHHHHHH.......STTT.S--E.EEE-SSSSSHHHH CS
    Bac_DnaA   4 rytFetFviGasnrlAl...aaalkvae.......apgkkynPl.fiygevGlGktHL 50 
                 +ytF + + G+  r+A    aaa ++ +       + g+ yn l f yg++G GktH 
  KOO21528.1 158 EYTFAQAILGPESRQAEvheAAAAELVQavcadglNGGEGYNALlFAYGQTGTGKTHT 215
                 7999999999999888422234444433111122235679**96267**********6 PP

>> Chon_Sulph_att  Chondroitin sulphate attachment domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.8   6.1     0.005        22      60     138 ..      20     102 ..       8     227 .. 0.79

  Alignments for each domain:
  == domain 1  score: 4.8 bits;  conditional E-value: 0.005
  Chon_Sulph_att  60 evleasaavtstewleadspGlggvtlelgsGdaqalPatlqaPdealglssv.ppalpeaseastPd...spipndkpspdp 138
                       +ea +av ++++ e+ + G ++v+ e+++G +qa+ a+  a    l   +  ++a  e  +a +P+   +pi ++ p  +p
      KOO21528.1  20 ANAEAASAVPAASGAEVSDVGAAAVGREMTAGRKQAIAAKEAAGAARLAALAAqKAAREEHERAINPNiakTPIRREVPLRKP 102
                     334666899******************************88887777765443045555555566664211445555555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (563 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       500  (0.0278878); expected 358.6 (0.02)
Passed bias filter:                      285  (0.015896); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.58u 0.25s 00:00:00.83 Elapsed: 00:00:00.43
# Mc/sec: 3912.54
//
Query:       KOO21529.1  [L=886]
Description: mcak-like kinesin [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.3e-84  284.0   0.0    1.9e-84  283.5   0.0    1.2  1  Kinesin      Kinesin motor domain
    1.2e-15   57.8   0.0      2e-15   57.0   0.0    1.3  1  Microtub_bd  Microtubule binding
    0.00013   21.8   0.0    0.00024   20.9   0.0    1.5  1  Homeodomain  Homeodomain


Domain annotation for each model (and alignments):
>> Kinesin  Kinesin motor domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  283.5   0.0   3.1e-88   1.9e-84       1     331 [.     381     730 ..     381     732 .. 0.93

  Alignments for each domain:
  == domain 1  score: 283.5 bits;  conditional E-value: 3.1e-88
                 EE-SSSHHHHTTTTEBCEEEEC.....TCTCEEEEEEEEECTTSCEEEEESEEEETTS-HHHHHHHHHHHHHHHHH.TTSEEEEEEEESTTSSHHHHHT CS
     Kinesin   1 RvRplnekekeeeeeeevevee.....ekkeeekkskkenkeeeekkfkFdkvfdeeatqeevyeetakplvesvl.eGynatifaYGqtgsGKTyTme 93 
                 R Rpl+++e+     ++v + +      + +e k + + +  +  ++f +d vfde+++++ vy eta+pl+++++ +G+++t+faYG+tgsGKT+Tm+
  KOO21529.1 381 RKRPLSSSEQGPGILQVVPTPAgspacLAVHEPKVKVDMTAYTDVHHFLYDCVFDEQSSNALVYAETAAPLISRIFaKGQSSTCFAYGATGSGKTFTMM 479
                 667777777777777777766677776556667777788888999*****************************9957********************* PP

                 BCTTTSBSHHHHHHHHHHHHHHHCTTTHEEEEEEEEEEEEEETTEEEETTSTTTTSTSSEBEEEECTTSCCEEETTS--EEESSHHHHHHHHHHHHHHH CS
     Kinesin  94 gkeeeeeGiipraleelFesikkekeekekefsvkvsylEiYneeiyDLLeskkskkkkklkiredskkgevyvkgltevevksaeevlellekgeknr 192
                 g+ e+e+G++  a +++F++++  +++    ++++vs +EiY  +i+DL+++ + +  k+l ired kk+ +++ gl+e  v s++ + +ll k+++ r
  KOO21529.1 480 GS-ETEPGMYLLAAADIFSMLALPQHK---GLTLNVSSFEIYGGKIFDLFAKGE-ELGKSLPIREDGKKK-MHIVGLSESAVPSLDAFNTLLLKASEAR 572
                 *8.999***************998776...89********************95.55667********87.**************************** PP

                 TSTTSSCTSHHCCSEEEEEEEEEEEETTTTTCEE....................EEEEEEEEEEEEECCCHHHHSS.TCHHHHHHHHHHHHHHHHHHHH CS
     Kinesin 193 kvaetklneeSSRSHavftitleqknlkeeteek....................vkisklnLvDLAGsErasktga.aegerlkEaaniNkSLlaLgrv 270
                 ++aet +n++SSRSHav+++t+++  +++   e                      +++++ ++DLAG Er ++t + ++++r+ E+a+iNkSLlaL+++
  KOO21529.1 573 RTAETLANADSSRSHAVLQLTIKRPPKEAPIPEMplrtpragvtraepaapggpEEVGRFAFIDLAGTERGADTLNcENKDRRLEGAEINKSLLALKEC 671
                 *************************999887744678899**********************************99888999***************** PP

                 HHHHHHTCCTSTSCGGGSHHHHHTGGGHSSSSEEEEEEEE-TBGGGHHHHHHHHHHHHHHC CS
     Kinesin 271 isaLaekkkskhipYRdSkLTrlLqdsLgGnsktlmivtvspssenleetlstlkfaerak 331
                 i+ L +   ++hip+R SkLT++L+ds+ G+++t+mi  vsp+ +++e+tl+tl++a+r++
  KOO21529.1 672 IRGLDKG--QTHIPFRGSKLTEVLRDSFIGDCHTVMIGAVSPCIDSVEQTLNTLRYADRVR 730
                 *******..**************************************************98 PP

>> Microtub_bd  Microtubule binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.0   0.0   3.3e-19     2e-15      18     148 ..     372     524 ..     368     525 .. 0.83

  Alignments for each domain:
  == domain 1  score: 57.0 bits;  conditional E-value: 3.3e-19
                  HCTB-EEEEEEECCCS-T..................EEEETTT.............TTTEEEE-SEEEECTTHCCCCCCCCHH.HHHHHH.TT--EEE CS
  Microtub_bd  18 lkGniRvfarvrpelesek.................akikfpe..........eekkkkkefsFdrvfeseseqeevfeeisq.lvqsal.dgynvci 86 
                      i v +r rp ++se+                 +                +  +  ++f +d vf+++s+++ v+ e+++ l+   + +g   + 
   KOO21529.1 372 SESRIKVVVRKRPLSSSEQgpgilqvvptpagspacL-----AvhepkvkvdmTAYTDVHHFLYDCVFDEQSSNALVYAETAApLISRIFaKGQSSTC 464
                  5667899999999999988888876666555555431.....03334566667778999*********************97626666668******* PP

                  EEEES................ST-HCHHHHHHHHHHCCTSCCCCEEEEEEEEEEESS-EEET CS
  Microtub_bd  87 faygqTGsGKtyTmegeeeeagmipraveeifetiselkekgwkyeielqfveiynekvqDl 148
                  fayg TGsGKt+Tm+g+e+e+gm   a   if++++    +++  +++++  eiy  k+ Dl
   KOO21529.1 465 FAYGATGSGKTFTMMGSETEPGMYLLAAADIFSMLALP--QHKGLTLNVSSFEIYGGKIFDL 524
                  ***********************************999..788899999*******999998 PP

>> Homeodomain  Homeodomain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.9   0.0   4.1e-08   0.00024       1      39 [.      39      77 ..      39      85 .. 0.92

  Alignments for each domain:
  == domain 1  score: 20.9 bits;  conditional E-value: 4.1e-08
                 ST-SSSS-HHHHHHHHHHHHHSSS-SHHHHHHHHHHHTS CS
  Homeodomain  1 rrkRttftkeqleeLeklFeenrypsaeereeLAkklgL 39
                 +  R+ + ++ l  L++++++++ ps+e+r++LA+kl++
   KOO21529.1 39 KTARWQIDPTVLSLLNQVYAMEPFPSTEMRKQLAAKLKV 77
                 578**********************************74 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (886 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       567  (0.0316247); expected 358.6 (0.02)
Passed bias filter:                      362  (0.0201908); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.70u 0.28s 00:00:00.98 Elapsed: 00:00:00.45
# Mc/sec: 5854.48
//
Query:       KOO21530.1  [L=765]
Description: prolyl oligopeptidase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    8.7e-47  159.3   0.0    1.4e-46  158.6   0.0    1.2  1  Peptidase_S9    Prolyl oligopeptidase family
    5.8e-10   38.5   0.0    8.7e-07   28.1   0.0    2.2  2  Peptidase_S9_N  Prolyl oligopeptidase, N-terminal beta-propel
     0.0025   17.1   0.0     0.0075   15.6   0.0    1.6  2  Hydrolase_4     Serine aminopeptidase, S33
  ------ inclusion threshold ------
      0.098   12.3   0.0       0.29   10.8   0.0    1.7  2  Abhydrolase_1   alpha/beta hydrolase fold


Domain annotation for each model (and alignments):
>> Peptidase_S9  Prolyl oligopeptidase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  158.6   0.0   3.2e-50   1.4e-46       8     208 ..     505     706 ..     497     709 .. 0.94

  Alignments for each domain:
  == domain 1  score: 158.6 bits;  conditional E-value: 3.2e-50
                   HHHHCCT-EEEEE--TTSSTTHCHHHHTTSGGGGHHHHHHHHHHHHHHHHTTS--GGGEEEEEETHHHHHHHHHHHH-GGG-SEEEEESE---CCCH CS
  Peptidase_S9   8 qlladrGyvvvvanirGsggyGeafhdagkrklgqnefdDfiaaaealakegyvdserlaitGgSyGGyltgaalnqrpdlFkaavaevpvvdvlry 104
                   ++l ++Gy++++anirG+g+yG ++h+a  +++ ++ ++Df a+a+ l+++g++ +e+l+i GgS+GG+l+g +l + p+lF+a+v++vp +d+ ry
    KOO21530.1 505 AWL-EKGYAYCQANIRGGGEYGPSWHQAALKEKRNKAYEDFEAVAKDLIQRGVTRPEKLGIQGGSNGGLLMGNMLVRSPELFGAIVCQVPLLDMKRY 600
                   577.9******************************************************************************************** PP

                   HCSTTSTHH.HCCCC--TTTCHHHHHHHHHH-CGGG--...---EEEEEEETT-SSS-THHHHHHHHHHH--S-SEEEEEETTS-SSTTSSHHHH.H CS
  Peptidase_S9 105 dsdtdllte.eymewgnpeeneegykelspyspldnvk...aypplLlihGlaDdrvppaealklvaaLqkkgknvlllifpdegHgvgkprakv.e 196
                    +   l ++ ++ e+gnp + +e+  +l++ysp++ ++   + pp+L+++++ Ddrv+p +a k+v ++ +   + l   + + gHg++ +++++  
    KOO21530.1 601 NKL--LAGAsWMGEYGNP-DVPEEWAYLQKYSPYHTLRagaRAPPTLFTTSTRDDRVHPGHARKMVGKMVDLRLPGLAYENIEGGHGGAADNKQRaF 694
                   **9..56777999*****.8888899*************************************************999********99988888855 PP

                   HHHHHHHHHHHH CS
  Peptidase_S9 197 elarllaFlkea 208
                        ++Fl+++
    KOO21530.1 695 MSTLAWSFLQKT 706
                   666667888776 PP

>> Peptidase_S9_N  Prolyl oligopeptidase, N-terminal beta-propeller domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.1   0.0   1.9e-10   8.7e-07      18     165 ..      14     174 ..       7     254 .. 0.67
   2 !    8.1   0.0   0.00022      0.99     328     397 ..     349     422 ..     320     435 .. 0.83

  Alignments for each domain:
  == domain 1  score: 28.1 bits;  conditional E-value: 1.9e-10
                     EE-TTGGGGSTTSHHHHHHHHHHHHHHHHHHCTST.CHHHHHHHHHHHT-S-E....E---EE..E.TTEEEEEEE-SS-SS-EEEEEC..STS- CS
  Peptidase_S9_N  18 vsDpYrWLeDddspetkayleaenkyteevlaqlkelrekikeeitklikedd....isapfr..k.gkyyyysrneggknqsvlyrqd..alsk 103
                       D + WLe  + +++ ++++a n+ + e l +     + ++  i ++++ ++    i+  f+  + ++ yy+ +++  + + ++ r++  +  +
      KOO21530.1  14 LHDARTWLENVEGKQALEWVKAKNAEALELLGDP--VHQPVYSHILSILESKEkipyIGRVFKtpEgESHYYNYWQDHVHVKGIWRRCTldEYRQ 106
                     6799*********************999998653..345555555444433220000333333224245677789*************8755555 PP

                     TTS-EEEEE-GGGGSTTS-.EEEEEEEE-TTS......SEEEEEEEETTSSEEEEEEEETTTTEEEEE CS
  Peptidase_S9_N 104 egeeeevlLDpNtlsedgtfvalgefavsedg......kllAyslsksGsdwytirvkdietgedlpd 165
                      ++++e++LD ++l +++  +++ + + + d+      +   + ls++Gsd+++ r +d+ +++++p 
      KOO21530.1 107 PSPKWETVLDLDALGKEEGVTWVWGGSTPLDEgpgvptDRAIIKLSRGGSDAKEAREFDLLKKRFVPA 174
                     669*************666677777777776434444467889****************999997764 PP

  == domain 2  score: 8.1 bits;  conditional E-value: 0.00022
                     EEEEEECTTEEEEEEEETTEEEEEEEETTTS-.......EEEEEB-SSSSEEEEEE--TT-SEEEEEEEETTCEEE CS
  Peptidase_S9_N 328 leeitvfknylvvsyrkdvlsrvqvvdlkngkv......llfevplpgvgsvssasgekedselfysfsSfltPst 397
                     le+++ +  yl++ ++ +v+s+++ ++ +  +        +f+ + +++ s+s+++++ +d+ + +  sS+++P+t
      KOO21530.1 349 LEGTSETFSYLILQILDNVRSELRFWKYDA-ALgrwsltQSFRGDGFASISASGVKADSSDD-IWMTSSSYIQPTT 422
                     5666667789*************9988443.3335698888888889999999999887776.***********86 PP

>> Hydrolase_4  Serine aminopeptidase, S33
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.0   1.7e-06    0.0075      22     120 ..     501     604 ..     495     624 .. 0.84
   2 ?   -2.5   0.0      0.54   2.4e+03     188     215 ..     637     664 ..     622     667 .. 0.82

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 1.7e-06
  Hydrolase_4  22 elaeaLaaqGfavyalDhrGhGrse...gkrghvpsfddyvdDlaafvekvkeehpel..plfllGhSmGGliallyllrypdkvaglilsaPalkik 114
                   +++a+ ++G+a +  + rG G+ +    + +  ++ ++ ++D++a+ + + ++  ++  +l + G S GGl+  ++l r p+ + ++++  P+l++k
   KOO21530.1 501 AVGKAWLEKGYAYCQANIRGGGEYGpswHQAALKEKRNKAYEDFEAVAKDLIQRGVTRpeKLGIQGGSNGGLLMGNMLVRSPELFGAIVCQVPLLDMK 598
                  48999****************999766666666778899*********9999998888789**********************888999999***999 PP

  Hydrolase_4 115 aklkap 120
                   + k+ 
   KOO21530.1 599 RYNKLL 604
                  765433 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 0.54
  Hydrolase_4 188 akitlPllllhGeaDkvvdpeasrelye 215
                   +   P+l+  +++D  v+p+ +r+++ 
   KOO21530.1 637 GARAPPTLFTTSTRDDRVHPGHARKMVG 664
                  555569*************999999875 PP

>> Abhydrolase_1  alpha/beta hydrolase fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   6.4e-05      0.29       8     106 ..     486     593 ..     481     607 .. 0.82
   2 ?   -2.4   0.0      0.64   2.9e+03     190     237 ..     620     671 ..     597     684 .. 0.69

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 6.4e-05
                    STTT...CGGGGTTGHHHHHHHHTTSEEEEEEETTSTTSSSTTTGB.......CHHSHHHHHHHHH.HH.HHHCTTSSEEEEEETHHHHHHHHHHH CS
  Abhydrolase_1   8 Glpg...ssdvwaerglapaLakdgfdvillDlrGvgySspapacin......ddygtasvaddld.ri.ldalgddkltlvGhSmGGmialayaa 92 
                    G++g   s+   +e+++++a  ++g+ ++  + rG g+  p++ +        + y++  ++++ +  i +  +  +kl + G+S GG+++ +++ 
     KOO21530.1 486 GYGGfeiSLTPSYEAAVGKAWLEKGYAYCQANIRGGGEYGPSWHQAAlkekrnKAYED--FEAVAKdLIqRGVTRPEKLGIQGGSNGGLLMGNMLV 579
                    444444666778888999999999***************9999987799998866665..7777774457999999******************** PP

                    HHGGGEEEEEEESE CS
  Abhydrolase_1  93 eyperVkalvllga 106
                    + pe   a+v+  +
     KOO21530.1 580 RSPELFGAIVCQVP 593
                    **********9888 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 0.64
                    HHHHHCCHHHHHHHHHCTHHHHS...EEEEEEETTCSSSCHHHHHHHHHC.....H CS
  Abhydrolase_1 190 eqwpttdsaklllrlrelknvla...ptlvisgtsDplvppkaledlaql.....l 237
                    e+w+++++ + +  lr      a   ptl+  +t D  v p++ +++ ++     l
     KOO21530.1 620 EEWAYLQKYSPYHTLRA--G--ArapPTLFTTSTRDDRVHPGHARKMVGKmvdlrL 671
                    45555555555555555..1..1235999999999999999888888776555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (765 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       327  (0.0182386); expected 358.6 (0.02)
Passed bias filter:                      313  (0.0174578); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.60u 0.27s 00:00:00.87 Elapsed: 00:00:00.42
# Mc/sec: 5408.20
//
Query:       KOO21531.1  [L=209]
Description: NADH dehydrogenase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      1e-17   64.7   1.8    2.2e-17   63.7   1.7    1.6  1  NDUFA12   NADH ubiquinone oxidoreductase subunit NDUFA12


Domain annotation for each model (and alignments):
>> NDUFA12  NADH ubiquinone oxidoreductase subunit NDUFA12
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.7   1.7   1.2e-21   2.2e-17       1      94 [.      68     185 ..      68     187 .. 0.80

  Alignments for each domain:
  == domain 1  score: 63.7 bits;  conditional E-value: 1.2e-21
     NDUFA12   1 gtlvGeDefGNkYyenkeelegrrrwveyaekak........dasqvppeWhgWlhhitdkppteekalkkrkwekehqenltgtkkayvpynttkpk. 90 
                 g++vG+D  GN Yye+k++ +gr+rwvey + +         das v peWhgWlh+++dkp +  +a+++++++     n ++++ ++   ++ ++  
  KOO21531.1  68 GSFVGKDYNGNMYYEDKNAPYGRTRWVEYPTPKGiwaieqnyDASMVSPEWHGWLHYTHDKPGNVLAAEHEKPFKMALPINQSMQRPEFGRESEFHQPp 166
                 789*************98878********98755778888888*********************99988999999999888888888776555553333 PP

     NDUFA12  91 ...............yeaW 94 
                                ye+W
  KOO21531.1 167 ctmaarivrgkvgpkYESW 185
                 5555556666666667766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (209 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       337  (0.0187964); expected 358.6 (0.02)
Passed bias filter:                      293  (0.0163422); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.23s 00:00:00.63 Elapsed: 00:00:00.38
# Mc/sec: 1633.80
//
Query:       KOO21532.1  [L=293]
Description: hypothetical protein Ctob_004226 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.2e-22   77.9  13.9    0.00093   19.1   0.1    7.4  7  LRR_6           Leucine Rich repeat
  ------ inclusion threshold ------
       0.02   15.2   8.1         25    5.3   0.1    4.5  4  FAM25           FAM25 family
       0.91    9.6  12.2        8.6    6.4   0.4    4.2  5  CbiG_N          Cobalamin synthesis G N-terminal


Domain annotation for each model (and alignments):
>> LRR_6  Leucine Rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.0   3.7e-06     0.022       5      24 .]       7      26 ..       4      26 .. 0.92
   2 ?   -0.2   0.0      0.23   1.4e+03       5      12 ..      51      58 ..      51      62 .. 0.86
   3 !    6.8   0.0    0.0013       7.9      13      24 .]     149     160 ..     141     160 .. 0.89
   4 !   13.6   0.0   9.1e-06     0.055       2      24 .]     166     188 ..     165     188 .. 0.90
   5 !   16.8   0.6   8.3e-07     0.005       2      24 .]     194     216 ..     193     216 .. 0.92
   6 !   19.1   0.1   1.6e-07   0.00093       2      24 .]     222     244 ..     221     244 .. 0.93
   7 !    9.5   0.0   0.00018       1.1       2      19 ..     250     267 ..     249     271 .. 0.88

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 3.7e-06
       LRR_6  5 LteLdLsgNdIgDeGaeaLa 24
                L+ L+++ N+I++eGa+ La
  KOO21532.1  7 LENLSVANNNIDGEGAQQLA 26
                899**************998 PP

  == domain 2  score: -0.2 bits;  conditional E-value: 0.23
       LRR_6  5 LteLdLsg 12
                Lt+LdL+g
  KOO21532.1 51 LTKLDLRG 58
                89999985 PP

  == domain 3  score: 6.8 bits;  conditional E-value: 0.0013
       LRR_6  13 NdIgDeGaeaLa 24 
                 N I D+Ga+a+a
  KOO21532.1 149 NLIRDDGAKAIA 160
                 88********98 PP

  == domain 4  score: 13.6 bits;  conditional E-value: 9.1e-06
       LRR_6   2 nthLteLdLsgNdIgDeGaeaLa 24 
                 n  +t+L L gN Ig+eGa+a++
  KOO21532.1 166 NAVVTTLALGGNYIGGEGAIAIS 188
                 55689****************96 PP

  == domain 5  score: 16.8 bits;  conditional E-value: 8.3e-07
       LRR_6   2 nthLteLdLsgNdIgDeGaeaLa 24 
                 n  Lt L+L  N IgD+Ga+a+a
  KOO21532.1 194 NAVLTNLNLINNSIGDDGAKAIA 216
                 6679*****************98 PP

  == domain 6  score: 19.1 bits;  conditional E-value: 1.6e-07
       LRR_6   2 nthLteLdLsgNdIgDeGaeaLa 24 
                 n  Lt+L+L  N I D+Ga+a+a
  KOO21532.1 222 NAVLTTLNLGTNSIRDDGAKAIA 244
                 667******************98 PP

  == domain 7  score: 9.5 bits;  conditional E-value: 0.00018
       LRR_6   2 nthLteLdLsgNdIgDeG 19 
                 n  Lt+L+L++N + D+G
  KOO21532.1 250 NAVLTKLNLKYNSMEDAG 267
                 667*************99 PP

>> FAM25  FAM25 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.3   0.1    0.0041        25      16      29 ..     151     164 ..     147     168 .. 0.88
   2 ?    4.3   0.3    0.0084        50      17      29 ..     208     220 ..     193     224 .. 0.85
   3 ?    4.7   0.1    0.0063        38      16      29 ..     235     248 ..     231     253 .. 0.87
   4 ?    2.2   0.0     0.038   2.2e+02      17      30 ..     264     277 ..     260     280 .. 0.86

  Alignments for each domain:
  == domain 1  score: 5.3 bits;  conditional E-value: 0.0041
       FAM25  16 aKeaGEKAiadalK 29 
                 +++ G KAia+alK
  KOO21532.1 151 IRDDGAKAIAEALK 164
                 6899*********9 PP

  == domain 2  score: 4.3 bits;  conditional E-value: 0.0084
       FAM25  17 KeaGEKAiadalK 29 
                  + G KAia+alK
  KOO21532.1 208 GDDGAKAIAEALK 220
                 5789********9 PP

  == domain 3  score: 4.7 bits;  conditional E-value: 0.0063
       FAM25  16 aKeaGEKAiadalK 29 
                 +++ G KAia++lK
  KOO21532.1 235 IRDDGAKAIAEVLK 248
                 7899*********9 PP

  == domain 4  score: 2.2 bits;  conditional E-value: 0.038
       FAM25  17 KeaGEKAiadalKk 30 
                  +aG  A+ da+K 
  KOO21532.1 264 EDAGKEAVRDAVKD 277
                 699*********96 PP

>> CbiG_N  Cobalamin synthesis G N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.2   0.0       2.9   1.7e+04      59      67 ..      21      29 ..      20      33 .. 0.70
   2 ?    6.4   0.4    0.0014       8.6      61      79 ..     153     171 ..     137     174 .. 0.89
   3 ?   -0.2   0.1      0.18   1.1e+03      62      78 ..     182     198 ..     172     201 .. 0.76
   4 ?    6.0   0.1     0.002        12      61      79 ..     209     227 ..     205     229 .. 0.89
   5 ?    2.7   0.0     0.021   1.2e+02      61      78 ..     237     254 ..     231     257 .. 0.87

  Alignments for each domain:
  == domain 1  score: -4.2 bits;  conditional E-value: 2.9
                THHHHHHHH CS
      CbiG_N 59 gAnelAeei 67
                gA++lA+ +
  KOO21532.1 21 GAQQLATAV 29
                778888766 PP

  == domain 2  score: 6.4 bits;  conditional E-value: 0.0014
                 HHHHHHHHHHTT-EE-XXX CS
      CbiG_N  61 nelAeeiaallgaepviTt 79 
                 ++ A+ ia++l++++v+Tt
  KOO21532.1 153 DDGAKAIAEALKVNAVVTT 171
                 56799*************9 PP

  == domain 3  score: -0.2 bits;  conditional E-value: 0.18
                 HHHHHHHHHTT-EE-XX CS
      CbiG_N  62 elAeeiaallgaepviT 78 
                 e A  i+++l++++v+T
  KOO21532.1 182 EGAIAISEALKVNAVLT 198
                 568899*********99 PP

  == domain 4  score: 6.0 bits;  conditional E-value: 0.002
                 HHHHHHHHHHTT-EE-XXX CS
      CbiG_N  61 nelAeeiaallgaepviTt 79 
                 ++ A+ ia++l++++v+Tt
  KOO21532.1 209 DDGAKAIAEALKVNAVLTT 227
                 7789**************9 PP

  == domain 5  score: 2.7 bits;  conditional E-value: 0.021
                 HHHHHHHHHHTT-EE-XX CS
      CbiG_N  61 nelAeeiaallgaepviT 78 
                 ++ A+ ia++l++++v+T
  KOO21532.1 237 DDGAKAIAEVLKVNAVLT 254
                 56799***********99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (293 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       429  (0.0239277); expected 358.6 (0.02)
Passed bias filter:                      300  (0.0167327); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.42u 0.23s 00:00:00.65 Elapsed: 00:00:00.37
# Mc/sec: 2371.66
//
Query:       KOO21533.1  [L=270]
Description: prolyl-tRNA synthetase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    5.5e-12   45.7   0.0    8.3e-12   45.1   0.0    1.4  1  HGTP_anticodon  Anticodon binding domain
  ------ inclusion threshold ------
       0.11   12.5   0.0       0.23   11.4   0.0    1.5  2  tRNA-synt_2b    tRNA synthetase class II core domain (G, H, P
       0.12   12.5   0.2       0.25   11.6   0.2    1.5  1  DPM3            Dolichol-phosphate mannosyltransferase subuni


Domain annotation for each model (and alignments):
>> HGTP_anticodon  Anticodon binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.1   0.0   1.4e-15   8.3e-12       1      86 [.      72     168 ..      72     192 .. 0.92

  Alignments for each domain:
  == domain 1  score: 45.1 bits;  conditional E-value: 1.4e-15
                     SEEEEESSSS........HHHHHHHHHHHHHHHHTTTSEEEEES.SSSTHHHHHHHHHHTT-SEEEEE-HHHHHHTEEEEEET..TTCEEEEEET CS
  HGTP_anticodon   1 qvvviplnek........aeeleeyakklaeeLraagirveldd.snesigkkireadllgipfavvvGekelekgtvtvrdr..dtreqervsl 84 
                     qvv++p++ k          el+ +++k ++ Lr+agir+++d   n ++g k+ e+++ g+p++++ G++++e+g + + +r    +++ +++l
      KOO21533.1  72 QVVLVPISPKgpekapeqHAELMAFVEKAKASLRKAGIRTHVDTrFNLKPGAKFFEWEKRGVPLRIECGPRDVESGALLCARRtpVGGDKFTLKL 166
                     89**************99677***********************99******************************9999999666668888887 PP

                     TH CS
  HGTP_anticodon  85 de 86 
                     d+
      KOO21533.1 167 DD 168
                     76 PP

>> tRNA-synt_2b  tRNA synthetase class II core domain (G, H, P, S and T)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   3.9e-05      0.23     129     176 ..       7      53 ..       2      56 .. 0.92
   2 ?   -2.9   0.0      0.97   5.8e+03     143     165 ..     179     201 ..     172     210 .. 0.73

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 3.9e-05
                   EEEEEEEEEETHHHHHTTEEEECTTSSEEEEEEEEEEEEHHHHHHHHH CS
                   xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  tRNA-synt_2b 129 ieigtiqklgtrlserlgatvldennreksvimicaaigveRllsail 176
                   ++ gt ++lg+++++++++ +  e+n+++ v ++  +++ +Rl++a++
    KOO21533.1   7 LQSGTSHFLGQNFAKAFDVYFQTEDNQRELVWATSWGVS-TRLIGALV 53 
                   688999******************************999.9****997 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 0.97
                   HHTTEEEECTTSSEEEEEEEEEE CS
                   xxxxxxxxxxxxxxxxxxxxxxx RF
  tRNA-synt_2b 143 erlgatvldennreksvimicaa 165
                   ++++a  ld ++++ +v+++  a
    KOO21533.1 179 DTMQAALLDAAKERMRVHTLEPA 201
                   67888888888888888877655 PP

>> DPM3  Dolichol-phosphate mannosyltransferase subunit 3 (DPM3)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.2   4.1e-05      0.25      67      90 ..      86     109 ..      84     110 .. 0.92

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 4.1e-05
        DPM3  67 cpeaakeLqkeikeAkadLrkkGv 90 
                  pe+++eL+  +++Aka Lrk+G+
  KOO21533.1  86 APEQHAELMAFVEKAKASLRKAGI 109
                 699*******************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (270 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       378  (0.0210832); expected 358.6 (0.02)
Passed bias filter:                      337  (0.0187964); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.43u 0.25s 00:00:00.68 Elapsed: 00:00:00.41
# Mc/sec: 1976.91
//
Query:       KOO21534.1  [L=271]
Description: hypothetical protein Ctob_004225 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
  ------ inclusion threshold ------
        3.5    7.4  10.0       0.26   11.1   0.8    2.4  2  Activator-TraM  Transcriptional activator TraM


Domain annotation for each model (and alignments):
>> Activator-TraM  Transcriptional activator TraM
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.8   1.5e-05      0.26      69     128 ..      91     150 ..      72     159 .. 0.81
   2 ?   -0.2   3.8     0.046   8.3e+02      55     105 ..     164     209 ..     147     233 .. 0.52

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 1.5e-05
  Activator-TraM  69 aervlnaalaaskealvkllqegakeaaevvrkeveaalarlkssirearrvallnlvas 128
                      e  l +++  +   + + lq++a  +ae +rk v++a ++ +  ++++r  + ln+  +
      KOO21534.1  91 FEYSLSSSFKGASVEVLERLQDFADMSAEELRKAVKQATIDSQMKLEQTRIASNLNVRNA 150
                     55556666655555567889******************************9999998665 PP

  == domain 2  score: -0.2 bits;  conditional E-value: 0.046
  Activator-TraM  55 eaiasrWgddakekaervlnaalaaskealvkllqegakeaaevvrkevea 105
                     e+i++  ++d +   e++l  a+   +ea+ k + e  ke a  + ++ + 
      KOO21534.1 164 EKISELQSNDGQ---EKLLQEAM--EREAVLKSMFELQKERAVKAEQREKV 209
                     556666666665...55677665..57888888888777655433322221 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (271 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1450  (0.0808746); expected 358.6 (0.02)
Passed bias filter:                      392  (0.021864); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.22s 00:00:00.66 Elapsed: 00:00:00.38
# Mc/sec: 2139.22
//
Query:       KOO21535.1  [L=8634]
Description: hypothetical protein Ctob_004222, partial [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    8.4e-56  186.0  30.4    6.9e-06   26.1   0.1   14.6 13  TIG       IPT/TIG domain
     0.0099   16.1   0.0    1.6e+02    2.6   0.0    6.0  6  DUF5599   Domain of unknown function (DUF5599)


Domain annotation for each model (and alignments):
>> TIG  IPT/TIG domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.0   0.1    0.0028        25      12      33 ..       4      29 ..       1      41 [. 0.71
   2 ?    0.8   0.1      0.06   5.4e+02      10      27 ..     161     188 ..     155     245 .. 0.71
   3 !   23.6   0.0   4.6e-09   4.1e-05       6      72 ..     430     506 ..     424     523 .. 0.80
   4 !   22.6   0.5   9.2e-09   8.2e-05       2      57 ..     529     591 ..     528     620 .. 0.79
   5 !   22.2   0.1   1.2e-08   0.00011       3      75 ..     627     703 ..     624     716 .. 0.88
   6 !   11.5   0.0   2.7e-05      0.24       6      85 .]     738     838 ..     736     838 .. 0.74
   7 !    6.9   0.0   0.00076       6.8       1      73 [.     842     927 ..     842     945 .. 0.67
   8 !   26.1   0.1   7.7e-10   6.9e-06       1      62 [.     949    1019 ..     949    1043 .. 0.72
   9 !   13.7   0.1   5.5e-06     0.049       8      83 ..    1057    1134 ..    1052    1136 .. 0.83
  10 !   13.6   0.1   5.9e-06     0.053       3      43 ..    1143    1195 ..    1140    1206 .. 0.84
  11 !   17.1   0.0   4.8e-07    0.0043      10      84 ..    6149    6230 ..    6141    6231 .. 0.88
  12 !   16.5   0.1   7.5e-07    0.0067       4      85 .]    6419    6508 ..    6413    6508 .. 0.86
  13 !   13.6   0.0     6e-06     0.054       4      63 ..    6518    6597 ..    6516    6617 .. 0.89

  Alignments for each domain:
  == domain 1  score: 5.0 bits;  conditional E-value: 0.0028
         TIG 12 sasgGttititGtnF....gtnssds 33
                s+ gGtt+ti G+ F    +   + +
  KOO21535.1  4 STRGGTTVTIVGREFsrisTGVLNRV 29
                6789***********55544444444 PP

  == domain 2  score: 0.8 bits;  conditional E-value: 0.06
         TIG  10 sgsasgGttititGtnF..........g 27 
                  g++ gGt ++i G +F          +
  KOO21535.1 161 GGPVTGGTEVVIEGIGFtggylneshiD 188
                 58999************66655555543 PP

  == domain 3  score: 23.6 bits;  conditional E-value: 4.6e-09
         TIG   6 isP.nsgsasgGttititGtnF......gtnssdssvtiggtpctvtasvssttlvcttPpgp...sgllnvsvlvd 72 
                 ++P + g++ gG+ iti+G ++      g+++ + +++++gt++t+ ++ ++t+l c t + p   +  + + +  +
  KOO21535.1 430 LTPvTAGPTLGGSVITIHGEGLaafarwGAQAGNARCRWDGTEVTIPQYLDDTQLWCRTAAQPftqATVVGLEIALN 506
                 667689*****************************************************999976533444444444 PP

  == domain 4  score: 22.6 bits;  conditional E-value: 9.2e-09
         TIG   2 vissisPnsgsasgGttititGtnF....gtnssdssvtiggtpctvta...svssttlvctt 57 
                 +++si+P+ g ++gGt +t+ G++F    ++n+sd++v +g+t  t+ +     +++ +v+ +
  KOO21535.1 529 TVTSIHPTGGRVDGGTVVTLGGSGFkayaSINVSDVRVGWGDTSLTNLTtpsVLTPNRIVVAS 591
                 79*******************************************999878766677665544 PP

  == domain 5  score: 22.2 bits;  conditional E-value: 1.2e-08
         TIG   3 issisPnsgsasgGttititGtnF...gtnssdssvtiggtpctvtasvssttlvcttPpgp.sgllnvsvlvdgaq 75 
                  ++ +P+ g++ gGt++ti G  F   +t+ ++  +++g  + ++ +    + +vcttPp + ++ +++ +  +gaq
  KOO21535.1 627 YTASEPTGGPTRGGTSVTILGGPFdvfSTDPRNALCRFGLVNFVAAEVLERHMIVCTTPPAAqPAVVSIALSFNGAQ 703
                 6899*****************999999*******************999************9777888888887744 PP

  == domain 6  score: 11.5 bits;  conditional E-value: 2.7e-05
         TIG   6 isPnsgsasgGttititGtnF.gtnssdssvtiggtpctvta.................svssttlvcttPpgp...sgllnvsvlvdgaqlrsdnttf 83 
                 +sP  g+  gGt +ti G++F   +ss +++++    ++  a                   s+  +vc++Pp     ++++n+++  +  +   ++++f
  KOO21535.1 738 LSPVGGPKGGGTAVTIVGSGFlAFSSSLVRCRWQAPIVDMLAaslaqtlslpppesqplELSNRRIVCLAPPARigaAETVNLTLSLNAIDFGATGLNF 836
                 688899999************966666677776666666666666688888888888889999999********7764466666665555566666666 PP

         TIG  84 tY 85 
                 +Y
  KOO21535.1 837 QY 838
                 66 PP

  == domain 7  score: 6.9 bits;  conditional E-value: 0.00076
         TIG   1 PvissisPnsgsasgGttititGtnF..gtnssdssvtiggtpctvta...svssttl.......vcttPpgp.sgllnvsvlvdg 73 
                 P +  i P+ g   gGt++t+ Gt+F   +    +s+++g+    + +   +++  t        vc++Pp++ + + ++ +  +g
  KOO21535.1 842 PYVARIIPSGGHRTGGTLVTLVGTGFdaLDRGAYLSCQYGEPTNAAYNpryTITRATAlggghaaVCESPPTKlTDTRQLWLALNG 927
                 6778899999999*************655555566666666555555465533333335888888888888885556666666555 PP

  == domain 8  score: 26.1 bits;  conditional E-value: 7.7e-10
         TIG    1 PvissisPnsgsasgGttititGtnF...gtnssdssvtiggtpctvta...svssttlvcttPpgp...s 62  
                  P+++s+ P+ g++sgGt +ti G++F   g n+++ s+++ +++  + +      +   +c +P+ +   +
  KOO21535.1  949 PSVQSVLPQAGVFSGGTVVTIFGQGFhglGGNTEFASCRFVTSNNIADTppiELLPERWTCRSPNQTaiaE 1019
                  89****************************************99877634444444444777777776441 PP

  == domain 9  score: 13.7 bits;  conditional E-value: 5.5e-06
         TIG    8 PnsgsasgGttititGtnFgtnssdssvtiggtpctvta..svssttlvcttPpgp.sgllnvsvlvdgaqlrsdnttf 83  
                  P+ g++ gGt++t++G +F +  +   +++g++  +v     vs   l c tPp+  sg++ + +  d+a  + +++++
  KOO21535.1 1057 PPGGVTTGGTLVTFRGFGF-DAGPIAFCRFGSSREVVMPvlQVSRERLLCATPPVGqSGDVHLLLSSDDAVYIDTGLDY 1134
                  77899**************.*************9999999999999999999998856688888777775555555555 PP

  == domain 10  score: 13.6 bits;  conditional E-value: 5.9e-06
         TIG    3 issisPnsgsasgGttititGtnF............gtnssdssvtiggtpct 43  
                   s i+P+ g+  gGt++t+tG+++            +  +++ ++++gg  + 
  KOO21535.1 1143 FSGITPEAGPKRGGTRVTLTGRGLaafvsesqplsqQEMTQVARCLWGGGFTS 1195
                  789*********************98888888888777777888888877665 PP

  == domain 11  score: 17.1 bits;  conditional E-value: 4.8e-07
         TIG   10 sgsasgGttititGtnF.....gtnssdssvtiggtpctvta...svssttlvcttPpgpsg.llnvsvlvdgaqlrsdnttft 84  
                   gs+ gGt+it++G +F       + ++ ++++ +   t  +   + ss++l+c tP+ p+   + v v  +g    +d+t+f+
  KOO21535.1 6149 GGSTLGGTIITLHGLGFheyegRRTPQFARCRFTDGLDTDDTialYLSSSELRCATPSKPDTaVHDVLVSLNG--ADFDPTPFS 6230
                  57888****************99999999***9988887777889***************655**********..778888776 PP

  == domain 12  score: 16.5 bits;  conditional E-value: 7.5e-07
         TIG    4 ssisPnsgsasgGttititGtnF....gtnssdssvtiggtpctvta..svssttlvcttPpgp.sgllnvsvlvdg.aqlrsdnttftY 85  
                  +s+s   g+ +gGt + + G  +    +++ + +++++g++++ +++  + + + ++ctt+p++  g +++ +  +g a    ++++ftY
  KOO21535.1 6419 YSLSVRGGPLQGGTVVHLEGAALdafnSDTPELVRCRWGEEESGLVTpsFLNASRITCTTTPRTvVGVVRLYLSLNGiAPFEDTGLDFTY 6508
                  45556789***************99998999999***********99***************9977799999999997666666667766 PP

  == domain 13  score: 13.6 bits;  conditional E-value: 6e-06
         TIG    4 ssisPnsgsasgGttititGtnF.....................gtnssdssvtiggtpctvtasvssttlvcttPpgpsg 63  
                   s+sP  g++sgGt+it+  +++                     +  +s+++v+ +  ++++  +v  + l+c tPp+ s+
  KOO21535.1 6518 LSLSPRGGPSSGGTLITVYANGLdalgtykppaagaarcrwgawDELASSPQVLANYRETPAL-TVAANRLECRTPPRGSS 6597
                  589************************************************************.*************9855 PP

>> DUF5599  Domain of unknown function (DUF5599)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.0      0.21   1.9e+03      22      49 ..    3091    3118 ..    3085    3125 .. 0.65
   2 ?    2.6   0.0     0.018   1.6e+02      19      50 ..    4952    4983 ..    4949    4989 .. 0.89
   3 ?    1.2   0.0     0.048   4.3e+02       9      48 ..    5744    5784 ..    5739    5793 .. 0.81
   4 ?   -1.6   0.0      0.38   3.4e+03      18      49 ..    6000    6031 ..    5995    6038 .. 0.87
   5 ?   -3.6   0.0       1.5   1.4e+04      18      48 ..    7237    7267 ..    7234    7271 .. 0.86
   6 ?    2.1   0.0     0.026   2.3e+02      18      47 ..    7364    7393 ..    7362    7403 .. 0.88

  Alignments for each domain:
  == domain 1  score: -0.8 bits;  conditional E-value: 0.21
     DUF5599   22 FvlpkldsgelrlvvGDelrlkykgsea 49  
                  F+ +  ++ +l    GDelr+ +++ ++
  KOO21535.1 3091 FSASDPNDINLAYGAGDELRITFDMATD 3118
                  4444444444444567******997764 PP

  == domain 2  score: 2.6 bits;  conditional E-value: 0.018
     DUF5599   19 lasFvlpkldsgelrlvvGDelrlkykgseae 50  
                  l+sF+++  d+ ++ l vGDe  l+++ ++++
  KOO21535.1 4952 LVSFTVSDADNRDAVLSVGDEYLLRFDRDTDK 4983
                  689***********************988765 PP

  == domain 3  score: 1.2 bits;  conditional E-value: 0.048
     DUF5599    9 rWdvglnk.krlasFvlpkldsgelrlvvGDelrlkykgse 48  
                  + d g+ +  +l sF+    d++++ l +GD l l++++ +
  KOO21535.1 5744 EGDFGVVRtPQLLSFTADDPDNADAVLSTGDTLMLRFDVAT 5784
                  55666655248899***********************9876 PP

  == domain 4  score: -1.6 bits;  conditional E-value: 0.38
     DUF5599   18 rlasFvlpkldsgelrlvvGDelrlkykgsea 49  
                  r++sF+ +  d g++   vGD l + ++g ++
  KOO21535.1 6000 RIVSFRASDPDGGDFSYGVGDTLTVTFNGRTN 6031
                  78999**********************99875 PP

  == domain 5  score: -3.6 bits;  conditional E-value: 1.5
     DUF5599   18 rlasFvlpkldsgelrlvvGDelrlkykgse 48  
                  r++ F  +  d+g+l   vGD   +++++ +
  KOO21535.1 7237 RIVRFEASDPDEGDLSYGVGDRFEIEFDVAT 7267
                  67889999999***********999998766 PP

  == domain 6  score: 2.1 bits;  conditional E-value: 0.026
     DUF5599   18 rlasFvlpkldsgelrlvvGDelrlkykgs 47  
                  r++sFv +  d+g+++l  GD l + ++  
  KOO21535.1 7364 RIVSFVAADPDNGDMQLSAGDTLSITFDER 7393
                  6899*********************99865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (8634 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       342  (0.0190752); expected 358.6 (0.02)
Passed bias filter:                      265  (0.0147805); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 2.04u 0.31s 00:00:02.35 Elapsed: 00:00:00.52
# Mc/sec: 49719.13
//
Query:       KOO21536.1  [L=190]
Description: prolyl-tRNA synthetase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    6.4e-14   52.3   0.0      1e-13   51.7   0.0    1.2  1  tRNA-synt_2b  tRNA synthetase class II core domain (G, H, P, 


Domain annotation for each model (and alignments):
>> tRNA-synt_2b  tRNA synthetase class II core domain (G, H, P, S and T)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.7   0.0   5.7e-18     1e-13       6     103 ..      80     176 ..      76     186 .. 0.88

  Alignments for each domain:
  == domain 1  score: 51.7 bits;  conditional E-value: 5.7e-18
                   TTSEEEEE-SSSHHHHHHHHHHHEEEBGG.SSEEEEEEEEEEBTTTSTBCTTTB-SEEEEEEEEEEES.GGGHHHHHHHHHHHHHHHHHHTT.SCEE CS
                   xxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  tRNA-synt_2b   6 rndreyiLkPtneetfvelirdevlrskr.LPlklyqiqtkyRdEksdsrGLlRvreFhqkdgyvfha.easlddslrdlikaisriferlglefra 100
                   + ++ +i++Pt+e+ + ++++++ + s+r LPlk+ q   + R E + +r+ lR  eF +++g+  ha +a++d + r+++ +++++ e+l+  + +
    KOO21536.1  80 ELEEPLIVRPTSETMIWHMFQKW-IMSYRdLPLKINQWANVVRWELR-TRPFLRSSEFLWQEGHTAHAtKAEADAMAREMLDEYADLCESLL-AVPV 173
                   567889***************99.888666*****************.********************99****************999987.3345 PP

                   EEE CS
                   xxx RF
  tRNA-synt_2b 101 iie 103
                   +++
    KOO21536.1 174 VKG 176
                   555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (190 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       414  (0.0230911); expected 358.6 (0.02)
Passed bias filter:                      348  (0.0194099); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.24s 00:00:00.64 Elapsed: 00:00:00.41
# Mc/sec: 1404.14
//
Query:       KOO21537.1  [L=10901]
Description: hypothetical protein Ctob_002194 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (10901 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       382  (0.0213063); expected 358.6 (0.02)
Passed bias filter:                      317  (0.0176809); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 2.52u 0.31s 00:00:02.83 Elapsed: 00:00:00.57
# Mc/sec: 57584.80
//
Query:       KOO21538.1  [L=578]
Description: phd finger, partial [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    4.1e-09   36.3   0.0    5.6e-09   35.8   0.0    1.2  1  DNA_methylase  C-5 cytosine-specific DNA methylase
    7.7e-07   28.6   5.7    7.7e-07   28.6   5.7    4.5  5  PHD_2          PHD-finger
    4.6e-06   26.4   8.0    4.6e-06   26.4   8.0    4.2  4  PHD            PHD-finger
     0.0002   21.5   4.9     0.0002   21.5   4.9    3.4  3  zf-HC5HC2H_2   PHD-zinc-finger like domain


Domain annotation for each model (and alignments):
>> DNA_methylase  C-5 cytosine-specific DNA methylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.8   0.0   1.2e-12   5.6e-09      62     168 ..     336     441 ..     314     547 .. 0.88

  Alignments for each domain:
  == domain 1  score: 35.8 bits;  conditional E-value: 1.2e-12
                    -SEEEE---GGGTECTSEE--TTSGGG.HHHHHHHHHHHHH-.....-SEEEEEEEGGGGGGCCSHHHHHHHHHHHHHTEEEEEEEEEGGGTT-SB CS
  DNA_methylase  62 iDlLvgGfPCqpfSvaGkqkgfedtrg.tLffeiiriikekk.....PkvfllENVkgLlkhdkgktlkvilekleelGYevsykllnasdyGvpQ 151
                      ++  Gf C pfS aG  +gfed+r  + f  ++r + e++      + ++ ENV+  l+h +       +e+le+lG+ v++ ++  s++  + 
     KOO21538.1 336 ATIIFCGFCCKPFSCAGLGRGFEDERWgDNFDLVVRALSEREerglwDQCLICENVPTFLNHLS-------VEHLEQLGWFVKIFVVAGSHFRCAS 424
                    568999******************9854889999********9999999*************55.......9************************ PP

                    --EEEEEEEEEGGG--- CS
  DNA_methylase 152 nReRvfivgirkdleln 168
                    +R R+++v++r +  l 
     KOO21538.1 425 SRLRLVLVAFRDKAALA 441
                    ***********987655 PP

>> PHD_2  PHD-finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.9   3.2         4   1.8e+04       6      12 ..     107     113 ..     107     114 .. 0.81
   2 !   28.6   5.7   1.7e-10   7.7e-07       2      36 .]     126     168 ..     125     168 .. 0.87
   3 ?   -2.0   0.2      0.62   2.8e+03       9      15 ..     176     182 ..     175     184 .. 0.83
   4 ?   -0.0   0.8      0.15   6.6e+02      25      35 ..     263     273 ..     260     274 .. 0.72
   5 ?   -2.0   0.4      0.61   2.7e+03       4      11 ..     338     345 ..     337     361 .. 0.86

  Alignments for each domain:
  == domain 1  score: -4.9 bits;  conditional E-value: 4
       PHD_2   6 sCdkCsv 12 
                 +C+ C++
  KOO21538.1 107 YCAVCCT 113
                 7999997 PP

  == domain 2  score: 28.6 bits;  conditional E-value: 1.7e-10
       PHD_2   2 npllsCdkCsvaVHasCYGvskesdgee........WlCrrCe 36 
                 n l++Cd+C ++VH+ CYG++   d+ +        ++C+rC+
  KOO21538.1 126 NHLVFCDGCGMCVHMFCYGMNARGDSFGrkgiddikFYCDRCA 168
                 89*******************999875566777889*****95 PP

  == domain 3  score: -2.0 bits;  conditional E-value: 0.62
       PHD_2   9 kCsvaVH 15 
                 +C +++H
  KOO21538.1 176 QCTLCLH 182
                 7999999 PP

  == domain 4  score: -0.0 bits;  conditional E-value: 0.15
       PHD_2  25 sdgeeWlCrrC 35 
                 ++g+e lC+ C
  KOO21538.1 263 KVGVEVLCSAC 273
                 56777888888 PP

  == domain 5  score: -2.0 bits;  conditional E-value: 0.61
       PHD_2   4 llsCdkCs 11 
                 +++C  C+
  KOO21538.1 338 IIFCGFCC 345
                 79999887 PP

>> PHD  PHD-finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.4   8.0     1e-09   4.6e-06       1      51 [.     107     169 ..     107     170 .. 0.83
   2 !    4.9   0.0    0.0053        24      22      35 ..     194     207 ..     192     215 .. 0.86
   3 ?   -1.4   0.6      0.49   2.2e+03      14      23 ..     266     275 ..     258     277 .. 0.68
   4 ?   -1.5   0.5      0.54   2.4e+03      13      24 ..     336     347 ..     330     352 .. 0.77

  Alignments for each domain:
  == domain 1  score: 26.4 bits;  conditional E-value: 1e-09
                 SBTTTTS.......TTSTTSCEEEETTTSCEEETTTSSSTHSHHSHHSS.....TBSSTTTHT CS
         PHD   1 rCavCkk.......ksdeeeelvqCdgCkrwfHqkClkppleseekpeg.....ewlCekCke 51 
                 +CavC         +  + ++lv+CdgC+ ++H+ C++++ + ++   +     +++C++C  
  KOO21538.1 107 YCAVCCTsdyryrsEGGDVNHLVFCDGCGMCVHMFCYGMNARGDSFGRKgiddiKFYCDRCAF 169
                 588877767776555566899*******************9977776668999********75 PP

  == domain 2  score: 4.9 bits;  conditional E-value: 0.0053
                 SCEEETTTSSSTHS CS
         PHD  22 krwfHqkClkpple 35 
                 k+w+H++C++++ +
  KOO21538.1 194 KSWYHVACVEYNST 207
                 58*******99865 PP

  == domain 3  score: -1.4 bits;  conditional E-value: 0.49
                 CEEEETTTSC CS
         PHD  14 elvqCdgCkr 23 
                   v+C  C++
  KOO21538.1 266 VEVLCSACSD 275
                 5578888876 PP

  == domain 4  score: -1.5 bits;  conditional E-value: 0.54
                 SCEEEETTTSCE CS
         PHD  13 eelvqCdgCkrw 24 
                  ++++C  C + 
  KOO21538.1 336 ATIIFCGFCCKP 347
                 568888888775 PP

>> zf-HC5HC2H_2  PHD-zinc-finger like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   2.6       1.6   7.2e+03      56      84 ..     106     142 ..      94     150 .. 0.63
   2 !   21.5   4.9   4.5e-08    0.0002       2      35 ..     176     210 ..     175     273 .. 0.82
   3 ?   -2.6   0.0       1.4   6.1e+03      56      63 ..     383     390 ..     371     399 .. 0.74

  Alignments for each domain:
  == domain 1  score: -2.8 bits;  conditional E-value: 1.6
  zf-HC5HC2H_2  56 ekCllCkkr......kGaciq..CskkeCktafHvtC 84 
                   + C++C ++      +G  ++     + C  + H+ C
    KOO21538.1 106 RYCAVCCTSdyryrsEGGDVNhlVFCDGCGMCVHMFC 142
                   4577776666667774433331122234888888888 PP

  == domain 2  score: 21.5 bits;  conditional E-value: 4.5e-08
  zf-HC5HC2H_2   2 eCvlCkkkgGalkkts.derwvHvlCallvpevsf 35 
                   +C+lC ++gGal++ + +++w+Hv C+ ++++ ++
    KOO21538.1 176 QCTLCLHSGGALRRRTdKKSWYHVACVEYNSTFEY 210
                   8***********76552788*******99876655 PP

  == domain 3  score: -2.6 bits;  conditional E-value: 1.4
  zf-HC5HC2H_2  56 ekCllCkk 63 
                   ++Cl+C++
    KOO21538.1 383 DQCLICEN 390
                   67888775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (578 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       421  (0.0234815); expected 358.6 (0.02)
Passed bias filter:                      246  (0.0137208); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.53u 0.23s 00:00:00.76 Elapsed: 00:00:00.41
# Mc/sec: 4194.22
//
Query:       KOO21539.1  [L=1081]
Description: hypothetical protein Ctob_002193 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1081 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       417  (0.0232584); expected 358.6 (0.02)
Passed bias filter:                      360  (0.0200792); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.69u 0.29s 00:00:00.98 Elapsed: 00:00:00.46
# Mc/sec: 7012.23
//
Query:       KOO21540.1  [L=2477]
Description: vacuolar protein sorting-associated protein vps13, partial [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    9.9e-25   86.9   0.0    2.2e-24   85.8   0.0    1.6  1  Chorein_N  N-terminal region of Chorein or VPS13
    7.4e-07   29.2   0.0    1.7e-06   28.0   0.0    1.6  1  VPS13      Vacuolar sorting-associated protein 13, N-terminal


Domain annotation for each model (and alignments):
>> Chorein_N  N-terminal region of Chorein or VPS13
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   85.8   0.0   2.5e-28   2.2e-24      11     115 ..     377     480 ..     375     481 .. 0.97

  Alignments for each domain:
  == domain 1  score: 85.8 bits;  conditional E-value: 2.5e-28
   Chorein_N  11 ryLgeyvenldrdqlkvslwsGeveLenlkLkkealdklelPfevkegvigklrlkipwsnlkskpvvieiedvyllaeprseseeedeekeekreqaa 109
                 r+Lg yv +l+r +l++++wsG+v+Lenl+L+++al  l +P +++ g+ig+l++ +pw +l+s pv+ e++dvy+la+p +e+++++ e+ee+r++++
  KOO21540.1 377 RLLGHYVLGLERRNLRLAVWSGRVVLENLSLRPDALLGL-VPAKLQVGTIGRLEMVVPWHKLGSMPVSLELHDVYVLATPLNEETSWRPEAEEARRWSK 474
                 68**********************************998.9********************************************************** PP

   Chorein_N 110 kkkkLa 115
                 k++ L+
  KOO21540.1 475 KQAALR 480
                 **9985 PP

>> VPS13  Vacuolar sorting-associated protein 13, N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.0   0.0   1.9e-10   1.7e-06     119     235 ..     512     629 ..     459     630 .. 0.79

  Alignments for each domain:
  == domain 1  score: 28.0 bits;  conditional E-value: 1.9e-10
       VPS13 119 YiLkPvsgeaklkln..kkgetdapklkldleldevgltLseeqyrdilklles...lsrlerreeyrklrPkvsvkenpraWWkYaikavleeirekr 212
                  iL  v++++ l ++  ++ +   p l+++++++  ++ ++++qy  ++ ll++   ++ +  r ++ + rP  s  e+p +WW+Ya  a ++e     
  KOO21540.1 512 LILDNVQVTLILVFDtlRHRPPGVPALMVQADFEVAAFRIDHAQYLALNDLLHYalhIRVYISRLRFGARRPRASIMEAPGEWWRYAKWAAVNEWG--- 607
                 588888888888777554444447*********************8877777761115667777899999**********************9944... PP

       VPS13 213 rkwsweaiaerrdlrkrYvelyk 235
                  ++  +  ++ ++lr++Y  +y+
  KOO21540.1 608 -AFAAPLKQQTLRLRREYLVAYQ 629
                 .4666777999999999999997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (2477 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       925  (0.0515924); expected 358.6 (0.02)
Passed bias filter:                      383  (0.021362); expected 358.6 (0.02)
Passed Vit filter:                        48  (0.00267723); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 1.27u 0.31s 00:00:01.58 Elapsed: 00:00:00.52
# Mc/sec: 14293.49
//
Query:       KOO21541.1  [L=450]
Description: der1-like protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.8e-14   52.7   0.1    6.9e-14   52.2   0.1    1.2  1  DER1      Der1-like family
  ------ inclusion threshold ------
      0.089   13.3   0.1         21    5.7   0.0    2.4  2  YusW      YusW-like protein


Domain annotation for each model (and alignments):
>> DER1  Der1-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.2   0.1   7.7e-18   6.9e-14      27     170 ..      13     166 ..       1     173 [. 0.82

  Alignments for each domain:
  == domain 1  score: 52.2 bits;  conditional E-value: 7.7e-18
        DER1  27 aklvlsyelvvkkvQiwRlltsllyfsstgfsflinlyfiyqysskLEegsfrgr.....sadyvylllflavlitllgl..la.dlvvLgqalilaiv 117
                   l ++ +lv + +Q+wR++ +++   ++g +f ++l+++  yss LE+++f+          y+ +l  +av i +++   ++  +++L ++l   +v
  KOO21541.1  13 ELLSMDGKLVHEDLQLWRVVSAFFWIDGIGTNFAMQLWIFGVYSSLLESQHFAVDddhfaLIRYATVLGAGAVQILIFAAalGTsTMLSLAHPLCFYVV 111
                 556778899********************************************9955554455666777777766666656544479************ PP

        DER1 118 YvwskknkdvqvsFfgvlrvkakylPlvllafsfllge..svvvsligilvghiy 170
                   ws+ +++ + + f + +v+a + P+ lla+ + l +  +++ +++g+  +  y
  KOO21541.1 112 GLWSRSDPNKSFELFQLGSVRAAFVPWCLLAMCVPLTGmeQATYNVVGVGAALAY 166
                 ****************************998877555446777888888776655 PP

>> YusW  YusW-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.0   0.0    0.0039        35      42      77 ..     323     358 ..     298     363 .. 0.79
   2 ?    5.7   0.0    0.0024        21      43      83 ..     376     416 ..     373     422 .. 0.90

  Alignments for each domain:
  == domain 1  score: 5.0 bits;  conditional E-value: 0.0039
        YusW  42 deAleelealLseLsvdsetsedevisqvlsalnld 77 
                 +   + + ++L + +v +++++ +v+ +v+s + l+
  KOO21541.1 323 EVTRQAVAQALGRTEVPEDMADADVVAEVYSLMGLN 358
                 445678999**********************99887 PP

  == domain 2  score: 5.7 bits;  conditional E-value: 0.0024
        YusW  43 eAleelealLseLsvdsetsedevisqvlsalnldedveef 83 
                 e+++ l++ L+e ++ + +s+ +v  ++++ l+l +d + f
  KOO21541.1 376 EVYRALNTSLAEYDLPKHMSDASVLAELFTLLELPRDAVGF 416
                 788999999*************************9887766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (450 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       642  (0.0358079); expected 358.6 (0.02)
Passed bias filter:                      371  (0.0206927); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.49u 0.26s 00:00:00.75 Elapsed: 00:00:00.42
# Mc/sec: 3184.96
//
Query:       KOO21542.1  [L=744]
Description: ribulose- bisphosphate carboxylase oxygenase large subunit n- isoform 1 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    5.6e-40  137.4   0.0    8.3e-40  136.8   0.0    1.1  1  RNA_pol_I_A49    A49-like RNA polymerase I associated factor
    1.9e-10   41.5   0.5    6.7e-10   39.7   0.5    1.9  1  Rubis-subs-bind  Rubisco LSMT substrate-binding


Domain annotation for each model (and alignments):
>> RNA_pol_I_A49  A49-like RNA polymerase I associated factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  136.8   0.0   9.3e-44   8.3e-40      15     363 ..      48     413 ..      38     427 .. 0.84

  Alignments for each domain:
  == domain 1  score: 136.8 bits;  conditional E-value: 9.3e-44
                    ..E-----EEEEEE-SSEEEEEE--HHHHHHE....EEEEEEEETTTTEEEEEEE-EEEEEEEESSTTTXXXXXX.......XXXXXXXXXXXXXX CS
  RNA_pol_I_A49  15 skkrkkselllvgeterleYvgknegegssaenll.rylvGvydketgelelypaplftlrpsvkakkseseeee.....edesktyaekraaLge 104
                     ++rkk++   v ++++++Y+g n g +  a ++   +l+Gv+ k +g+++l +a+l++++p vka k + e+ e       ++++y +++++L++
     KOO21542.1  48 PSDRKKHQCEAVLQNDTIKYTGVNYGRDGTAAKSAgAFLIGVHHKGSGTVKLAAAQLYVMKPAVKAPKVSLEPPEefsvtISSGAEYNDRKRQLVS 143
                    56788888888899************9998888888******************************99888888879998778889999******* PP

                    XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
  RNA_pol_I_A49 105 aFGtkKakkalrsrernkvdsealeevedailesikeataslptkeelqaavassrplPpanldAtepedVYplsdlissaelealevkalekaad 200
                    + G  Ka+k  r ++  +v s+a+ ++ +  ++   +a + + +     ++++++ + Pp++l+At+ +++Yp s++ +++++++l++k l+ a++
     KOO21542.1 144 QLGAAKARKRQRVADTGAVSSNAVLDALALNADISGAAREAADKPVVELSELERHPLHPPFDLAATSAAHAYPRSSFAPDRVWDSLDYKPLRAASK 239
                    ********************99766665444333333332233333335555666789*************************************8 PP

                    XXXXXXXXXX...XXXXXXXXXXXXXXXXXX...XXXXXXXXXXXXXXXXXXXXX.XXX......XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
  RNA_pol_I_A49 201 keervellpy..kskssfvakrlekllqkseeaakkklrllyYlslLlkfysarrsvrkrgte..keklkeklesvpeiiidkllrkFteessnnk 292
                    + e++e+l++  + +s++v+  l   l  ++ a+++ lr  +Yl ++l+f+s + +    ++    +  +++l  vp+    +ll+ Fte  s ++
     KOO21542.1 240 SAEELEKLAAepTLFSPYVLGLLAGKLPGDKLARTHLLRATLYLTHMLRFSSLHAPIAPIREGseGHPDAQRL-RVPPDSWAQLLEDFTEPLSARE 334
                    8888888888899**********977776777**********************9998887776433344555.777777899*******999988 PP

                    XXXXX........XXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
  RNA_pol_I_A49 293 gkskr........lskshkdkLlayilalaL.hldnfsvdltdLaedLklkpkklnelfkelGckiskltaaeaealgle 363
                    g+  r        +++  ++kL+++++alaL h+ + ++ ++ La  L+l+++k+  ++k+lGc ++k+  ++ +al+ +
     KOO21542.1 335 GEPLRegmptkrrVTPPLREKLAMHCIALALvHVGGGRLRCDALAATLGLTEQKVGFYLKQLGCVVEKAGGGK-QALRAR 413
                    888778999999******************95688888******************************99655.565555 PP

>> Rubis-subs-bind  Rubisco LSMT substrate-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.7   0.5   7.5e-14   6.7e-10       6     128 ..     579     705 ..     576     706 .. 0.91

  Alignments for each domain:
  == domain 1  score: 39.7 bits;  conditional E-value: 7.5e-14
  Rubis-subs-bind   6 aeeKlqlLerhglpstqefplkleegipeeLlaylrvllasekdakeleelaskeedsg.laseplsddnEaaalrllldrckalLsaypttle 98 
                       +eK  lL++    + +ef+l +   ++++ +++lr+ l+   + +el++     ++++ la  p+  +nE ++   l+ r++++L+  pttle
       KOO21542.1 579 QQEKMALLASCRYGPPREFELSA-RRLNPAIVCALRLALL---TRQELDGECGG-SWKRpLAHAPVCLANERRVALALHARLQRMLELEPTTLE 667
                      589********************.****************...*****998775.57778999******************************* PP

  Rubis-subs-bind  99 eDeellkdadaavtn........rerlavqlrvgEkrI 128
                      +D++ll++   ++            r a+ lr   k++
       KOO21542.1 668 HDRALLAGRAGDEGVddeegmleELRPAIMLRANRKQV 705
                      *******9887754488888888888999999999887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (744 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       320  (0.0178482); expected 358.6 (0.02)
Passed bias filter:                      281  (0.0156729); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.56u 0.28s 00:00:00.84 Elapsed: 00:00:00.43
# Mc/sec: 5175.38
//
Query:       KOO21543.1  [L=169]
Description: hypothetical protein Ctob_008376 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (169 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       324  (0.0180713); expected 358.6 (0.02)
Passed bias filter:                      270  (0.0150594); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.39u 0.29s 00:00:00.68 Elapsed: 00:00:00.43
# Mc/sec: 1174.92
//
Query:       KOO21544.1  [L=161]
Description: hypothetical protein Ctob_008377 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.4e-11   44.3   0.0    2.6e-11   43.4   0.0    1.5  1  Thioredoxin    Thioredoxin
  ------ inclusion threshold ------
      0.017   15.1   1.3      0.029   14.4   1.3    1.3  1  DUF1043        Protein of unknown function (DUF1043)
       0.12   12.1   6.1       0.19   11.5   6.1    1.3  1  Myb_CC_LHEQLE  MYB-CC type transfactor, LHEQLE motif
       0.47   10.9   3.6       0.93   10.0   3.6    1.6  1  IATP           Mitochondrial ATPase inhibitor, IATP
        2.3    9.1   5.4          6    7.8   2.5    2.2  2  TMA7           Translation machinery associated TMA7


Domain annotation for each model (and alignments):
>> Thioredoxin  Thioredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.4   0.0   7.2e-15   2.6e-11      36     101 ..       1      70 [.       1      72 [. 0.93

  Alignments for each domain:
  == domain 1  score: 43.4 bits;  conditional E-value: 7.2e-15
                  HHHHHHHHHHHCTT..TSEEEEEETTTS.HHHHHHTT-SSSSEEEEEETTE.EEEEEESS-HHHHHHHHH CS
  Thioredoxin  36 laPeleklaeelkd..kvklakvdvden.edlakkyevegiPtlklfkngk.evkkyegarekeklaafl 101
                  ++P ++klaee+++  +v +a vd+++  ++l++k++v+g+Pt+k f  g+ e +kyeg r+ ++l+++ 
   KOO21544.1   1 MKPDWDKLAEEYAGstNVLIADVDCTQAgKSLCDKHGVQGYPTIKTFGPGDdEGEKYEGDRSLDALKKHA 70 
                  79************9**********9874789******************9999************9976 PP

>> DUF1043  Protein of unknown function (DUF1043)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.4   1.3     8e-06     0.029      28      69 ..     110     151 ..      98     158 .. 0.90

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 8e-06
     DUF1043  28 klekelekakaeleeqkqeledHfaqsaelLetlaedyqkLy 69 
                 kl++ l+ ++ e+++ + el++ f+ s++ Le+l+++y+ + 
  KOO21544.1 110 KLQNALKVQQREHDQLEVELKQRFEASKKHLEDLQKKYNPII 151
                 89************************************9765 PP

>> Myb_CC_LHEQLE  MYB-CC type transfactor, LHEQLE motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   6.1   5.3e-05      0.19      10      41 ..     114     143 ..     110     148 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 5.3e-05
  Myb_CC_LHEQLE  10 QmevQkrLhEQLEvQrhLqlRiEaqgkyLqki 41 
                     + vQ+r h+QLEv  +L+ R Ea +k L+ +
     KOO21544.1 114 ALKVQQREHDQLEV--ELKQRFEASKKHLEDL 143
                    578***********..6************986 PP

>> IATP  Mitochondrial ATPase inhibitor, IATP
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   3.6   0.00026      0.93      60      95 ..     113     149 ..     102     152 .. 0.85

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.00026
        IATP  60 EeeyirqrekekLa.eLkeklaeqkeHleeleeHiea 95 
                  +  ++qre+++L+ eLk++ +  k+Hle+l++  + 
  KOO21544.1 113 NALKVQQREHDQLEvELKQRFEASKKHLEDLQKKYNP 149
                 566789*******769***************987665 PP

>> TMA7  Translation machinery associated TMA7
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.0   0.1      0.11   3.9e+02      33      51 ..      58      76 ..      53      82 .. 0.84
   2 ?    7.8   2.5    0.0017         6       8      45 ..     110     147 ..     102     149 .. 0.80

  Alignments for each domain:
  == domain 1  score: 2.0 bits;  conditional E-value: 0.11
        TMA7 33 eeekalkelkakaagkGpl 51
                e ++ l++lk+ aa+ Gp 
  KOO21544.1 58 EGDRSLDALKKHAASLGPT 76
                678899*********9996 PP

  == domain 2  score: 7.8 bits;  conditional E-value: 0.0017
        TMA7   8 kPLKapKkkkkelDeeDlafkqkqkeeekalkelkaka 45 
                 k   a K +++e D  +++ kq+  + +k l++l++k 
  KOO21544.1 110 KLQNALKVQQREHDQLEVELKQRFEASKKHLEDLQKKY 147
                 44456688999************************995 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (161 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1469  (0.0819343); expected 358.6 (0.02)
Passed bias filter:                      914  (0.0509789); expected 358.6 (0.02)
Passed Vit filter:                       115  (0.00641419); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.46u 0.26s 00:00:00.72 Elapsed: 00:00:00.42
# Mc/sec: 1151.08
//
Query:       KOO21545.1  [L=413]
Description: signal peptidase i [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.8e-07   31.0   0.0      1e-06   28.6   0.0    2.2  2  Peptidase_S24  Peptidase S24-like
    2.9e-05   23.9   0.0    6.6e-05   22.7   0.0    1.6  1  Peptidase_S26  Signal peptidase, peptidase S26


Domain annotation for each model (and alignments):
>> Peptidase_S24  Peptidase S24-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.0      0.25   2.3e+03      24      36 ..     142     154 ..     133     178 .. 0.81
   2 !   28.6   0.0   1.1e-10     1e-06       2      55 ..     320     392 ..     319     402 .. 0.94

  Alignments for each domain:
  == domain 1  score: -1.4 bits;  conditional E-value: 0.25
                    ---TTSEEEEEET CS
  Peptidase_S24  24 epkrGdivvfrlp 36 
                     ++ G++vv+   
     KOO21545.1 142 RLRTGEVVVALSS 154
                    6789999999655 PP

  == domain 2  score: 28.6 bits;  conditional E-value: 1.1e-10
                    XXSSTTCCTXXTTXEEEEECTS.....---TTSEEEEEETTCE..............-EEEEEEEEETTEEEE CS
  Peptidase_S24   2 vpGdSMeptlldGdlilVdkfs.....epkrGdivvfrlpgee..............eayiKrviglpgdrvl 55 
                    +p+ SMe+tl+ Gd++l +k s       +  d+v f  p+e               +++iKrv    gd+v 
     KOO21545.1 320 IPSRSMEATLQVGDVVLAEKLSsrlglPFEVNDLVLFSPPPELqslvtsaggklgsrDLFIKRVAAVAGDTVA 392
                    8*********************************************************************998 PP

>> Peptidase_S26  Signal peptidase, peptidase S26
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.7   0.0   7.3e-09   6.6e-05      22      65 ..     348     392 ..     328     397 .. 0.91

  Alignments for each domain:
  == domain 1  score: 22.7 bits;  conditional E-value: 7.3e-09
  Peptidase_S26  22 levgdlvlvepPeelaalaa.ergylprgvpllKrVlalagqevc 65 
                     ev dlvl+ pP el +l++ + g l+++ +++KrV+a+ag++v 
     KOO21545.1 348 FEVNDLVLFSPPPELQSLVTsAGGKLGSRDLFIKRVAAVAGDTVA 392
                    5899*************999899********************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (413 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       397  (0.0221429); expected 358.6 (0.02)
Passed bias filter:                      369  (0.0205812); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.49u 0.23s 00:00:00.72 Elapsed: 00:00:00.41
# Mc/sec: 2989.28
//
Query:       KOO21546.1  [L=83]
Description: hypothetical protein Ctob_000461, partial [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (83 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       243  (0.0135535); expected 358.6 (0.02)
Passed bias filter:                      125  (0.00697194); expected 358.6 (0.02)
Passed Vit filter:                        10  (0.000557756); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.23s 00:00:00.57 Elapsed: 00:00:00.39
# Mc/sec: 639.11
//
Query:       KOO21547.1  [L=812]
Description: ABC transporter f family member 3-like protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    5.4e-48  163.0   0.0    1.5e-25   90.3   0.0    2.8  2  ABC_tran      ABC transporter
    1.4e-18   67.8   9.2      3e-05   24.0   0.1    4.2  4  AAA_21        AAA domain, putative AbiEii toxin, Type IV TA s
      2e-15   56.6   5.3      2e-15   56.6   5.3    4.0  3  ABC_tran_Xtn  ABC transporter
    3.4e-08   33.6   0.1    4.3e-05   23.5   0.1    2.4  2  RsgA_GTPase   RsgA GTPase
    6.8e-08   32.2   0.9     0.0062   16.0   0.0    4.0  3  SMC_N         RecF/RecN/SMC N terminal domain
    8.1e-07   29.4   1.5       0.01   16.1   0.1    3.1  2  AAA_22        AAA domain
    6.7e-06   26.6   6.1      0.037   14.4   0.0    3.0  2  AAA_16        AAA ATPase domain
    7.7e-06   25.6   0.4      0.011   15.5   0.1    2.5  2  AAA_29        P-loop containing region of AAA domain
    2.1e-05   24.6   0.0      0.017   15.2   0.0    2.6  2  MMR_HSR1      50S ribosome-binding GTPase
      7e-05   23.4   3.5       0.78   10.3   0.0    3.9  3  AAA_18        AAA domain
    0.00012   21.9   6.1        0.1   12.3   0.1    3.2  4  AAA_15        AAA ATPase domain
    0.00035   20.4   0.0       0.95    9.1   0.0    2.4  2  AAA_24        AAA domain
    0.00068   19.6   0.1       0.74    9.7   0.0    2.6  2  NACHT         NACHT domain
    0.00089   18.9   0.2        2.3    7.8   0.0    3.3  3  AAA_25        AAA domain
     0.0012   19.1   8.9      0.036   14.3   0.2    3.4  3  AAA_28        AAA domain
     0.0014   18.8   0.1        2.6    8.3   0.0    2.5  2  Roc           Ras of Complex, Roc, domain of DAPkinase
     0.0019   18.6   5.4       0.12   12.8   0.0    3.4  2  AAA           ATPase family associated with various cellular 
     0.0034   17.3   0.2       0.56   10.1   0.1    2.6  2  NTPase_1      NTPase
     0.0049   17.2   0.0        0.9   10.0   0.0    2.4  2  RNA_helicase  RNA helicase
      0.005   16.5   2.1       0.31   10.7   0.5    2.8  2  SRP54         SRP54-type protein, GTPase domain
     0.0074   16.8  14.9       0.15   12.5   0.0    3.8  3  AAA_23        AAA domain
  ------ inclusion threshold ------
      0.014   15.4   0.8        3.5    7.6   0.1    2.9  2  AAA_5         AAA domain (dynein-related subfamily)
      0.015   14.5   0.1        1.4    8.1   0.1    2.4  2  NB-ARC        NB-ARC domain
      0.021   14.3   0.2        1.8    8.0   0.1    2.2  2  AAA_7         P-loop containing dynein motor region
      0.027   14.6   6.8        2.5    8.3   0.0    3.6  3  AAA_33        AAA domain
       0.03   14.5   0.0       0.43   10.8   0.0    2.9  2  SbcCD_C       Putative exonuclease SbcCD, C subunit
      0.037   14.1   0.0        7.6    6.6   0.0    2.9  2  AAA_14        AAA domain
      0.075   13.0   0.5        8.7    6.4   0.1    2.5  2  TsaE          Threonylcarbamoyl adenosine biosynthesis protei
       0.15   11.9   0.0         18    5.1   0.0    2.4  2  dNK           Deoxynucleoside kinase
       0.15   11.8   0.1         27    4.5   0.0    2.5  2  PduV-EutP     Ethanolamine utilisation - propanediol utilisat
       0.18   11.7   0.0        2.5    8.0   0.0    2.3  2  Rad17         Rad17 P-loop domain
       0.18   11.4   0.1         21    4.7   0.0    2.4  2  Ras           Ras family
       0.22   11.1   0.1        2.1    7.8   0.0    2.1  2  FeoB_N        Ferrous iron transport protein B


Domain annotation for each model (and alignments):
>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.8   0.0   5.8e-22   3.2e-19       1     137 []     229     409 ..     229     409 .. 0.70
   2 !   90.3   0.0   2.7e-28   1.5e-25       2     137 .]     570     700 ..     569     700 .. 0.92

  Alignments for each domain:
  == domain 1  score: 69.8 bits;  conditional E-value: 5.8e-22
                 EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--.SEEEEEETTCEGGGB-HHHCCHCEEEE-SS.--S-TTSB.HHHH................. CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxx.xxxx................. RF
    ABC_tran   1 lknvslklkegekvaivGenGaGKStLlkllagllkp.teGeilldgkdlkeqeleslrkeigvlpqe.pqlfpelt.vren................. 79 
                 l++v+l+l +g+k++++G+nG GK+t+lk l+ +      +++     ++ ++e e+ +++++vl+   ++  +++  ++e                  
  KOO21547.1 229 LDDVDLTLVHGRKYGLIGRNGVGKTTFLKFLSAHQFEgIPERL-----QVLHIEQEVPSSQLSVLETVlATDLERIAlLAEAkeleeeaasegaseaas 322
                 799****************************987643333333.....333344444444444444443222222221222234444466666788888 PP

                 .............HHHTCHHHHHHHSTTGG................TTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTTT CS
                 .............xxxxxxxxxxxxxxxxx................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  80 .............esdeeiekalsklglke................lkdtvvksspssLSgGqkqrvalarallkkpkllllDEpta 137
                              e+ ++++++l++l+ ++                +++  + +s +s+SgG++ rvalaral+ +p++lllDEpt+
  KOO21547.1 323 easktdedladeaERLARLKEVLERLDEIDsatapsragailsglgFDAAMQARSVASFSGGWRMRVALARALFIAPDVLLLDEPTN 409
                 88777777766555555588888888888888888888999888885555555667******************************8 PP

  == domain 2  score: 90.3 bits;  conditional E-value: 2.7e-28
                 EEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGGB-HHHCCHCEEEE-SS..--S-TTSBHHHH....HHHTCHHHHHHHSTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxx....xxxxxxxxxxxxxxx RF
    ABC_tran   2 knvslklkegekvaivGenGaGKStLlkllagllkpteGeilldgkdlkeqeleslrkeigvlpqe..pqlfpeltvren....esdeeiekalsklgl 94 
                 ++v+l l  +++va+vG+nG GKStLlk+++g+l+pt G++           +++ r ++g ++q+  +ql+  lt+ e       ++++ +++++lg 
  KOO21547.1 570 SKVHLGLDMSSRVALVGPNGVGKSTLLKIITGELEPTVGSV-----------TRHGRLRMGRFTQHhvDQLDLSLTALEAfqkaFPEAKPLEIRAHLGG 657
                 579999***********************************...........6788889999999978888888888888887777788999******* PP

                 GGTTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  95 kelkdtvvksspssLSgGqkqrvalarallkkpkllllDEpta 137
                  +l  +++ +++s+LSgGqk+rva a++++++p llllDEpt+
  KOO21547.1 658 MGLGGNTALQRMSTLSGGQKSRVAFAQIMWQRPHLLLLDEPTN 700
                 **99999999********************************8 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.0   1.4e-05    0.0077       3      25 ..     243     265 ..     242     312 .. 0.79
   2 !   10.7   0.4   0.00061      0.33     244     274 ..     389     415 ..     336     441 .. 0.81
   3 !   20.2   0.1   7.9e-07   0.00043       3      44 ..     583     618 ..     582     627 .. 0.79
   4 !   24.0   0.1   5.5e-08     3e-05     230     302 ..     665     731 ..     624     732 .. 0.81

  Alignments for each domain:
  == domain 1  score: 16.1 bits;  conditional E-value: 1.4e-05
      AAA_21   3 vliGpNgsGKSnLLdaldllarl 25 
                 +liG+Ng+GK+++L+ l+  ++ 
  KOO21547.1 243 GLIGRNGVGKTTFLKFLSAHQFE 265
                 69***************887654 PP

  == domain 2  score: 10.7 bits;  conditional E-value: 0.00061
      AAA_21 244 llalltallralkkgsllliDEpEngLHPkl 274
                 + al+ al+ a+   ++ll+DEp n+L+ ++
  KOO21547.1 389 V-ALARALFIAP---DVLLLDEPTNHLDLHA 415
                 3.7777888888...9************954 PP

  == domain 3  score: 20.2 bits;  conditional E-value: 7.9e-07
      AAA_21   3 vliGpNgsGKSnLLdaldllarldrdvegltdelsggggirk 44 
                 +l+GpNg+GKS+LL+++       +++e++  + +++g +r+
  KOO21547.1 583 ALVGPNGVGKSTLLKII------TGELEPTVGSVTRHGRLRM 618
                 79***************......6777777777776666665 PP

  == domain 4  score: 24.0 bits;  conditional E-value: 5.5e-08
      AAA_21 230 qelparelSdGtkrllalltallralkkgsllliDEpEngLHPkllrrllellkelsrngaQviltTHSplll 302
                     ++ lS G+k+  a++ ++++++    lll+DEp n+L+  +++ l+  l e+s     +++ +H+ +l+
  KOO21547.1 665 ALQRMSTLSGGQKSRVAFAQIMWQRP---HLLLLDEPTNHLDLDAVEALIHALVECSC---GLLVISHDAHLV 731
                 33445667******9***********...89*************************66...9*******9997 PP

>> ABC_tran_Xtn  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.4   2.5       1.2   6.7e+02      53      76 ..     155     178 ..     150     188 .. 0.70
   2 ?   -2.3   0.1       8.7   4.7e+03      36      52 ..     334     350 ..     317     360 .. 0.59
   3 !   56.6   5.3   3.7e-18     2e-15       5      85 .]     453     540 ..     451     542 .. 0.81

  Alignments for each domain:
  == domain 1  score: 0.4 bits;  conditional E-value: 1.2
  ABC_tran_Xtn  53 kakkakqaqsrekaLeklekiekp 76 
                    a+++kqa+  ek+L++  + ek 
    KOO21547.1 155 MARRFKQARRGEKQLKREARREKV 178
                   467788888888888887666655 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 8.7
  ABC_tran_Xtn  36 qqkeikkleefIerfra 52 
                   + +++++l+e+ er+ +
    KOO21547.1 334 EAERLARLKEVLERLDE 350
                   45555666666665543 PP

  == domain 3  score: 56.6 bits;  conditional E-value: 3.7e-18
  ABC_tran_Xtn   5 ngklteYkGnYseyleekeerleqqqka........yekqqkeikkleefIerfrakakkakqaqsrekaLeklekiekpeekkpklrf 85 
                   ++k+t++kG+Y+++  ++ erl+q ++         +++q k ++++e+fI+rfra a++a+++qsr+kaL ++e +++  e +p+lrf
    KOO21547.1 453 DKKITRWKGDYDTFETTRSERLRQNERMrdaqasrmRDAQDKTRAHMESFIQRFRASANRAAMVQSRIKALGRMESLAEILE-DPTLRF 540
                   689******************9988765111111115678899********************************9988843.366555 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.4   0.0    0.0071       3.9      98     122 ..     238     262 ..     228     281 .. 0.82
   2 !   23.5   0.1   7.8e-08   4.3e-05     101     149 ..     581     631 ..     567     636 .. 0.86

  Alignments for each domain:
  == domain 1  score: 7.4 bits;  conditional E-value: 0.0071
                  TTSEEEEECSTTSSHHHHHHHHCTT CS
  RsgA_GTPase  98 kdktsvlvGqSGvGKStLinallpe 122
                  +++   l+G  GvGK+t+++ l  +
   KOO21547.1 238 HGRKYGLIGRNGVGKTTFLKFLSAH 262
                  5567779************999876 PP

  == domain 2  score: 23.5 bits;  conditional E-value: 7.8e-08
                  EEEEECSTTSSHHHHHHHHCTT-----S-----..---------SEEEEEE CS
  RsgA_GTPase 101 tsvlvGqSGvGKStLinallpelelktgevsek..lgrGkhTTtavellel 149
                   ++lvG+ GvGKStL++ +++ele  +g+v ++  l+ G+ T  +v  l+l
   KOO21547.1 581 RVALVGPNGVGKSTLLKIITGELEPTVGSVTRHgrLRMGRFTQHHVDQLDL 631
                  578***************************86433889****999987776 PP

>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.6   0.1     0.073        40      29      44 ..     244     259 ..     230     456 .. 0.49
   2 !    7.6   0.0    0.0041       2.2      26      44 ..     581     599 ..     570     604 .. 0.84
   3 !   16.0   0.0   1.1e-05    0.0062     135     204 ..     670     733 ..     628     742 .. 0.89

  Alignments for each domain:
  == domain 1  score: 3.6 bits;  conditional E-value: 0.073
                 EEESTTSSHHHHHHHH CS
                 xxxxxxxxxxxxxxxx RF
       SMC_N  29 ivGpNGSGKsnlldAi 44 
                 ++G+NG GK+ +l  +
  KOO21547.1 244 LIGRNGVGKTTFLKFL 259
                 6788888888776533 PP

  == domain 2  score: 7.6 bits;  conditional E-value: 0.0041
                 EEEEEESTTSSHHHHHHHH CS
                 xxxxxxxxxxxxxxxxxxx RF
       SMC_N  26 ftaivGpNGSGKsnlldAi 44 
                   a+vGpNG GKs ll  i
  KOO21547.1 581 RVALVGPNGVGKSTLLKII 599
                 4689*********998765 PP

  == domain 3  score: 16.0 bits;  conditional E-value: 1.1e-05
                 TCS-HHHHHHHHHHHHHHHHCCS--SEEEECTTTTTS-HHHHHHHHHHHHHHCTTSEEEEE-SSHHHCCC CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N 135 elLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvkkvaellkeksknaQfivislreemlek 204
                 ++LSgG+k+ va a +    + ++  l llDe   +LD   v+++ + l e s  + ++vis+++++++ 
  KOO21547.1 670 STLSGGQKSRVAFAQI----MWQRPHLLLLDEPTNHLDLDAVEALIHALVECS--CGLLVISHDAHLVSS 733
                 58*******9886666....7888899*************************9..9*******9998875 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.1   1.9e-05      0.01      10     117 ..     244     353 ..     239     368 .. 0.69
   2 !   10.8   0.2   0.00083      0.45       9      68 ..     583     633 ..     579     732 .. 0.53

  Alignments for each domain:
  == domain 1  score: 16.1 bits;  conditional E-value: 1.9e-05
      AAA_22  10 vtGesGtGKTtllrrlleqldeeakaee..erpevvfvtlpsstsskdllrellralglelka.....erlsseellealeqalraravielliiDEaq 101
                 ++G  G+GKTt l+ l        +     er +v++++  +++s+ ++l+ +l  ++le+ a     ++l++e+  e   +a+++++++   + DEa+
  KOO21547.1 244 LIGRNGVGKTTFLKFLSAHQ---FE--GipERLQVLHIEQEVPSSQLSVLETVLA-TDLERIAllaeaKELEEEAASEGASEAASEASKTDEDLADEAE 336
                 79*************99986...23..3458999999999999988888877764.44445555566655555555533333333333346679***** PP

      AAA_22 102 hlrs.eealeeLrslln 117
                 +l + +e+le L ++  
  KOO21547.1 337 RLARlKEVLERLDEIDS 353
                 **547999999966655 PP

  == domain 2  score: 10.8 bits;  conditional E-value: 0.00083
      AAA_22   9 vvtGesGtGKTtllrrlleqldeeakaeeerpevvfvtlpsstsskdllrellralglel 68 
                 +++G+ G+GK+tll+ ++ +l         +p+v +vt  +      + ++ + +l+l+l
  KOO21547.1 583 ALVGPNGVGKSTLLKIITGEL---------EPTVGSVTRHGRLRMGRFTQHHVDQLDLSL 633
                 79*************999998.........444444444444444444444444444444 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.6   1.1   0.00012     0.065      29     151 ..     244     355 ..     233     367 .. 0.65
   2 !   14.4   0.0   6.8e-05     0.037      25      63 ..     580     629 ..     568     724 .. 0.69

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 0.00012
      AAA_16  29 lsGesGvGKsslvrellralekdggiflrgkcdql..esaipysalaqalareellrqlldeaesaeleawrekleealaavpelagaeasrllellkr 125
                 l+G  GvGK++ ++ l  +  +     + ++ + l  e+++p s  +++l++  l ++l++    a+l++++e  eea++++++ a++eas   e l++
  KOO21547.1 244 LIGRNGVGKTTFLKFLSAHQFEG----IPERLQVLhiEQEVPSS-QLSVLET-VLATDLERI---ALLAEAKELEEEAASEGASEAASEASKTDEDLAD 333
                 7899*********9999766666....99999999555555543.4444423.444444433...4666666666666666777777777777777777 PP

      AAA_16 126 llallsrderplvlvlDdlqwadeas 151
                  +++l+r ++    vl+ l+ +d+a+
  KOO21547.1 334 EAERLARLKE----VLERLDEIDSAT 355
                 7766666455....555555555544 PP

  == domain 2  score: 14.4 bits;  conditional E-value: 6.8e-05
      AAA_16  25 elvllsGesGvGKsslvrellralekd...........ggiflrgkcdql 63 
                 + v l+G+ GvGKs+l++ +  +le +            g f++ + dql
  KOO21547.1 580 SRVALVGPNGVGKSTLLKIITGELEPTvgsvtrhgrlrMGRFTQHHVDQL 629
                 5689****************999999987777744442244444444444 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.6   0.0    0.0058       3.1      24      39 ..     241     256 ..     228     261 .. 0.80
   2 !   15.5   0.1     2e-05     0.011      12      39 ..     569     596 ..     567     603 .. 0.86

  Alignments for each domain:
  == domain 1  score: 7.6 bits;  conditional E-value: 0.0058
      AAA_29  24 atlltGpsGsGKSTll 39 
                  + l+G++G+GK+T+l
  KOO21547.1 241 KYGLIGRNGVGKTTFL 256
                 5779**********97 PP

  == domain 2  score: 15.5 bits;  conditional E-value: 2e-05
      AAA_29  12 fdghtieidlkgatlltGpsGsGKSTll 39 
                 f++  + +d+++ + l+Gp+G+GKSTll
  KOO21547.1 569 FSKVHLGLDMSSRVALVGPNGVGKSTLL 596
                 66666778888899*************8 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.7   0.0     0.014       7.5       2      21 ..     242     261 ..     241     278 .. 0.86
   2 !   15.2   0.0   3.2e-05     0.017       1      26 [.     581     607 ..     581     629 .. 0.85

  Alignments for each domain:
  == domain 1  score: 6.7 bits;  conditional E-value: 0.014
                 EEEEESTTSSHHHHHHHHHT CS
    MMR_HSR1   2 vaivGrpNvGKStLinaltg 21 
                  +++Gr  vGK+t+++ l+ 
  KOO21547.1 242 YGLIGRNGVGKTTFLKFLSA 261
                 589************98875 PP

  == domain 2  score: 15.2 bits;  conditional E-value: 3.2e-05
                 EEEEEESTTSSHHHHHHHHHTS.TEEE CS
    MMR_HSR1   1 evaivGrpNvGKStLinaltge.kaiv 26 
                 +va+vG   vGKStL++ +tge +  v
  KOO21547.1 581 RVALVGPNGVGKSTLLKIITGElEPTV 607
                 69******************9854444 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.8   0.3       1.2   6.6e+02     100     127 ..     149     176 ..     130     181 .. 0.85
   2 !   10.3   0.0    0.0014      0.78       3      38 ..     244     286 ..     243     338 .. 0.74
   3 !   10.1   0.0    0.0017       0.9       1      38 [.     582     617 ..     582     655 .. 0.66

  Alignments for each domain:
  == domain 1  score: 0.8 bits;  conditional E-value: 1.2
      AAA_18 100 taspeelleRlekRgyeeakikeneeae 127
                 ++s+e +++R+++ ++ e+  k++ + e
  KOO21547.1 149 DCSEEAMARRFKQARRGEKQLKREARRE 176
                 69**********9999998887666555 PP

  == domain 2  score: 10.3 bits;  conditional E-value: 0.0014
      AAA_18   3 ltGtpGvGKttlakeLskrlgf........gvnlrdvakengll 38 
                 l G  GvGKtt+ k Ls +  f        + ++ + ++ ++l+
  KOO21547.1 244 LIGRNGVGKTTFLKFLSAHQ-FegiperlqVLHIEQEVPSSQLS 286
                 67889************994.66567766655655555555554 PP

  == domain 3  score: 10.1 bits;  conditional E-value: 0.0017
      AAA_18   1 IlltGtpGvGKttlakeLskrlgfgvnlrdvakengll 38 
                 ++l G+ GvGK+tl k +  +l     +++v ++++l+
  KOO21547.1 582 VALVGPNGVGKSTLLKIITGEL--EPTVGSVTRHGRLR 617
                 6899************996655..44444444444444 PP

>> AAA_15  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.7   0.5   0.00056      0.31      28      44 ..     244     260 ..     239     334 .. 0.86
   2 ?   -1.9   0.0       3.8   2.1e+03     220     271 ..     294     351 ..     262     359 .. 0.60
   3 !   12.3   0.1   0.00019       0.1      20      43 ..     577     599 ..     568     601 .. 0.81
   4 ?   -1.0   0.0       2.1   1.1e+03     322     351 ..     688     717 ..     682     722 .. 0.87

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00056
      AAA_15  28 liGkNnsGKSsileald 44 
                 liG+N++GK+++l++l 
  KOO21547.1 244 LIGRNGVGKTTFLKFLS 260
                 8*************994 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 3.8
      AAA_15 220 klkekileealqekl.eeelteklkeiqeklkeidkklaeelk.....kilkkkidki 271
                 + +e+i   a +++l ee   e ++e  ++ +++d++la+e++     k++ + +d+i
  KOO21547.1 294 TDLERIALLAEAKELeEEAASEGASEAASEASKTDEDLADEAErlarlKEVLERLDEI 351
                 3333333333333336777777788888888888888877777666555555555544 PP

  == domain 3  score: 12.3 bits;  conditional E-value: 0.00019
      AAA_15  20 dlseeltvliGkNnsGKSsileal 43 
                 d+s+    l+G+N++GKS++l+++
  KOO21547.1 577 DMSS-RVALVGPNGVGKSTLLKII 599
                 4455.789**************98 PP

  == domain 4  score: -1.0 bits;  conditional E-value: 2.1
      AAA_15 322 eknvilliEEPEahLHpqaqkvlikllkel 351
                 +++++ll++EP +hL  +a + li++l e 
  KOO21547.1 688 QRPHLLLLDEPTNHLDLDAVEALIHALVEC 717
                 5789***********999999999988775 PP

>> AAA_24  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.7   0.0    0.0023       1.3       2      22 ..     239     259 ..     238     297 .. 0.87
   2 !    9.1   0.0    0.0018      0.95       2      22 ..     579     599 ..     578     616 .. 0.87

  Alignments for each domain:
  == domain 1  score: 8.7 bits;  conditional E-value: 0.0023
      AAA_24   2 klkiliyGpsgiGKTtlakel 22 
                 ++k+ ++G +g+GKTt++k l
  KOO21547.1 239 GRKYGLIGRNGVGKTTFLKFL 259
                 57899************9866 PP

  == domain 2  score: 9.1 bits;  conditional E-value: 0.0018
      AAA_24   2 klkiliyGpsgiGKTtlakel 22 
                 + +++++Gp+g+GK+tl+k +
  KOO21547.1 579 SSRVALVGPNGVGKSTLLKII 599
                 5699*************9866 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.2   0.0     0.008       4.3       5      21 ..     244     260 ..     240     296 .. 0.87
   2 !    9.7   0.0    0.0014      0.74       2      22 ..     581     601 ..     580     607 .. 0.86

  Alignments for each domain:
  == domain 1  score: 7.2 bits;  conditional E-value: 0.008
                 EEC-TTTCHHHHHHHHH CS
       NACHT   5 lqGeaGsGKTtLlqkla 21 
                 l G++G+GKTt+l+ l 
  KOO21547.1 244 LIGRNGVGKTTFLKFLS 260
                 78***********8765 PP

  == domain 2  score: 9.7 bits;  conditional E-value: 0.0014
                 CEEEEC-TTTCHHHHHHHHHH CS
       NACHT   2 lvilqGeaGsGKTtLlqklal 22 
                  v+l G++G+GK+tLl+ +  
  KOO21547.1 581 RVALVGPNGVGKSTLLKIITG 601
                 689*************98865 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.8   0.0    0.0042       2.3      38      86 ..     244     285 ..     232     354 .. 0.75
   2 !    7.0   0.0    0.0073       3.9      31      50 ..     577     596 ..     562     599 .. 0.88
   3 ?   -1.8   0.0       3.5   1.9e+03     100     148 ..     677     724 ..     661     725 .. 0.64

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 0.0042
      AAA_25  38 laGapgtGKttlaldlalavatGkpwlgpvapeqgkVlyvsaEdsedel 86 
                 l+G+ g+GKtt++  l+++  +G p       e+  Vl +  E + ++l
  KOO21547.1 244 LIGRNGVGKTTFLKFLSAHQFEGIP-------ERLQVLHIEQEVPSSQL 285
                 89*****************999995.......77888888888887544 PP

  == domain 2  score: 7.0 bits;  conditional E-value: 0.0073
      AAA_25  31 pagelallaGapgtGKttla 50 
                  + + ++l+G+ g+GK+tl+
  KOO21547.1 577 DMSSRVALVGPNGVGKSTLL 596
                 678899************96 PP

  == domain 3  score: -1.8 bits;  conditional E-value: 3.5
      AAA_25 100 darllvldlagv.eslpLfakdrggtl..ltadvdaleaaieevegvrlvvi 148
                 ++r+++ ++  + ++ +L+ +d   +   l  +v+al+ a+ e +  +l+vi
  KOO21547.1 677 KSRVAFAQI--MwQRPHLLLLDEPTNHldL-DAVEALIHALVE-CSCGLLVI 724
                 566777766..4456666666555555224.457999999999.66999887 PP

>> AAA_28  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.3   0.2   6.7e-05     0.036       4      70 ..     244     314 ..     241     353 .. 0.79
   2 ?   -2.4   0.1       9.1     5e+03      51      68 ..     472     489 ..     418     501 .. 0.66
   3 !    9.4   0.0    0.0022       1.2       1      46 [.     581     629 ..     581     653 .. 0.63

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 6.7e-05
      AAA_28   4 itGgestGKTtlleaLaargypvvpEaarei.leekl.akgedalpwv..edllafaervleeqleeeaaa 70 
                 ++G  + GKTt l+ L+a++++ +pE    + +e++   ++   l+ v   dl ++a + ++++leeeaa 
  KOO21547.1 244 LIGRNGVGKTTFLKFLSAHQFEGIPERLQVLhIEQEVpSSQLSVLETVlaTDLERIALLAEAKELEEEAAS 314
                 79999*******************77766551555556666677777776699999999999999888776 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 9.1
      AAA_28  51 dllafaervleeqleeea 68 
                 ++l+ +er+ ++q+++ +
  KOO21547.1 472 ERLRQNERMRDAQASRMR 489
                 233333333444444443 PP

  == domain 3  score: 9.4 bits;  conditional E-value: 0.0022
      AAA_28   1 kivitGgestGKTtlleaLaargypvv...pEaareileeklakgedal 46 
                 +++++G+ + GK+tll+ ++ +  p+v   ++ +r  +   ++ + d+l
  KOO21547.1 581 RVALVGPNGVGKSTLLKIITGELEPTVgsvTRHGRLRMGRFTQHHVDQL 629
                 799**************99966333331125555554444444444444 PP

>> Roc  Ras of Complex, Roc, domain of DAPkinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.3   0.0    0.0048       2.6       3      26 ..     243     266 ..     241     290 .. 0.82
   2 !    8.1   0.0    0.0055         3       1      20 [.     581     600 ..     581     627 .. 0.87

  Alignments for each domain:
  == domain 1  score: 8.3 bits;  conditional E-value: 0.0048
                 EEESSTTSSHHHHHHCHCT-CCC- CS
         Roc   3 vlvGdsgvGKtsllkrfvedkfse 26 
                  l+G +gvGKt++lk +  ++f+ 
  KOO21547.1 243 GLIGRNGVGKTTFLKFLSAHQFEG 266
                 69*************999999974 PP

  == domain 2  score: 8.1 bits;  conditional E-value: 0.0055
                 EEEEESSTTSSHHHHHHCHC CS
         Roc   1 KvvlvGdsgvGKtsllkrfv 20 
                 +v lvG +gvGK++llk ++
  KOO21547.1 581 RVALVGPNGVGKSTLLKIIT 600
                 589************98654 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.9   0.3     0.015       7.9       3      70 ..     244     354 ..     242     363 .. 0.52
   2 !   12.8   0.0   0.00023      0.12       2      27 ..     583     608 ..     582     697 .. 0.80

  Alignments for each domain:
  == domain 1  score: 6.9 bits;  conditional E-value: 0.015
                 EESSTTSSHHHHHHHHHHH...........HTHE.....................EEEEETTTCSSS.....................STTHHHHHHHH CS
         AAA   3 lyGppGtGKTllakavake...........lgve.....................fleisgsellsk.....................yvgesekkire 48 
                 l+G  G+GKT++ k +  +           l  +                                                        +e++k  ++
  KOO21547.1 244 LIGRNGVGKTTFLKFLSAHqfegiperlqvL--HieqevpssqlsvletvlatdlE----------RiallaeakeleeeaasegaseAASEASKTDED 330
                 89************99988433333332221..02233333333333333333330..........033333333333334444444466666666666 PP

                 HHHHHHHTS..TSEEEEEETGGGH CS
         AAA  49 lfkeakeka..kpsilfiDEidal 70 
                 l +ea++ a  k +   +DEid+ 
  KOO21547.1 331 LADEAERLArlKEVLERLDEIDSA 354
                 666666666544344457777765 PP

  == domain 2  score: 12.8 bits;  conditional E-value: 0.00023
                 EEESSTTSSHHHHHHHHHHHHTHEEE CS
         AAA   2 llyGppGtGKTllakavakelgvefl 27 
                  l+Gp G+GK++l k +  el+ ++ 
  KOO21547.1 583 ALVGPNGVGKSTLLKIITGELEPTVG 608
                 69******************965443 PP

>> NTPase_1  NTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.7   0.0     0.048        26       4      19 ..     244     259 ..     241     265 .. 0.84
   2 !   10.1   0.1     0.001      0.56       1      24 [.     581     604 ..     581     632 .. 0.79

  Alignments for each domain:
  == domain 1  score: 4.7 bits;  conditional E-value: 0.048
                 EE--TTSSHHHHHHHH CS
    NTPase_1   4 iTGppGvGKtTlvkkv 19 
                 + G+ GvGKtT++k +
  KOO21547.1 244 LIGRNGVGKTTFLKFL 259
                 679*********9876 PP

  == domain 2  score: 10.1 bits;  conditional E-value: 0.001
                 EEEEE--TTSSHHHHHHHHHHHH. CS
    NTPase_1   1 kvfiTGppGvGKtTlvkkvlellk 24 
                 +v++ Gp GvGK+Tl+k ++ +l+
  KOO21547.1 581 RVALVGPNGVGKSTLLKIITGELE 604
                 58899**************99995 PP

>> RNA_helicase  RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.7   0.0     0.074        40       3      21 ..     244     262 ..     243     280 .. 0.85
   2 !   10.0   0.0    0.0017       0.9       2      26 ..     583     607 ..     582     631 .. 0.74

  Alignments for each domain:
  == domain 1  score: 4.7 bits;  conditional E-value: 0.074
  RNA_helicase   3 lyGpsgeGKStlakeLaka 21 
                   l G++g+GK+t+ k L+++
    KOO21547.1 244 LIGRNGVGKTTFLKFLSAH 262
                   679**********998765 PP

  == domain 2  score: 10.0 bits;  conditional E-value: 0.0017
  RNA_helicase   2 wlyGpsgeGKStlakeLakallkkl 26 
                    l+Gp+g+GKStl k ++ +l+ ++
    KOO21547.1 583 ALVGPNGVGKSTLLKIITGELEPTV 607
                   689*************998888555 PP

>> SRP54  SRP54-type protein, GTPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.7   0.5   0.00056      0.31       6     125 ..     244     368 ..     240     383 .. 0.69
   2 ?    4.1   0.0     0.057        31       3      18 ..     581     596 ..     579     604 .. 0.86

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00056
                 EEESTTSSHHHHHHHHHHHHHHTTS-EEEEEESTSSTTHHHHHHHHHHHTTEEEEE....SSTTSCHHHHHHHHHHHHHH..TTSSEEEEEE--SSTTH CS
       SRP54   6 lvGlqGaGKTttlaKLaallkkegkkvllvaaDtfRaaAveQLktlaeklgvpvik....kkeeadpaavakeavekake..ekidvvlvDTaGrlqnd 98 
                 l+G +G+GKTt l  L+a  + eg    l  + +       QL++l + l  ++ +    ++ ++ + + a+e+ ++a +  +k+d  l D a rl+  
  KOO21547.1 244 LIGRNGVGKTTFLKFLSA-HQFEGIPERLQVLHIEQEVPSSQLSVLETVLATDLERiallAEAKELEEEAASEGASEAASeaSKTDEDLADEAERLARL 341
                 79********99977765.455666666666667777778888887776655443344554444445555555555544301458999*********** PP

                 HHHHHHHHHHHHHHSSSEEEEEEETTB CS
       SRP54  99 kelmeelkkikkvvkpdevllvldatt 125
                 ke++e l++i ++++p +   +l+++ 
  KOO21547.1 342 KEVLERLDEIDSATAPSRAGAILSGLG 368
                 **************9999888877653 PP

  == domain 2  score: 4.1 bits;  conditional E-value: 0.057
                 EEEEEESTTSSHHHHH CS
       SRP54   3 villvGlqGaGKTttl 18 
                  ++lvG++G+GK t l
  KOO21547.1 581 RVALVGPNGVGKSTLL 596
                 578**********976 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.1   0.1    0.0032       1.7      23      40 ..     243     260 ..     225     269 .. 0.85
   2 ?    0.4   4.6       1.4   7.8e+02     131     190 ..     295     353 ..     264     356 .. 0.62
   3 !   12.5   0.0   0.00028      0.15      23      40 ..     583     600 ..     562     603 .. 0.90

  Alignments for each domain:
  == domain 1  score: 9.1 bits;  conditional E-value: 0.0032
      AAA_23  23 lItGpNGaGKTTildAik 40 
                  ++G NG GKTT+l ++ 
  KOO21547.1 243 GLIGRNGVGKTTFLKFLS 260
                 57899*********9986 PP

  == domain 2  score: 0.4 bits;  conditional E-value: 1.4
      AAA_23 131 ilnlilflgqerfeefelkdkkerleelekeleeledekkllekleqekekekeleelee 190
                  l++i++l++ + e +e+++ + + e+++++ ++ ed +++ e+l ++ke  ++l+e+ +
  KOO21547.1 295 DLERIALLAEAK-ELEEEAASEGASEAASEASKTDEDLADEAERLARLKEVLERLDEIDS 353
                 334444444433.34555556667777788888888888888887777777777777754 PP

  == domain 3  score: 12.5 bits;  conditional E-value: 0.00028
      AAA_23  23 lItGpNGaGKTTildAik 40 
                 +++GpNG GK+T+l  i+
  KOO21547.1 583 ALVGPNGVGKSTLLKIIT 600
                 689***********9887 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.3   0.1     0.034        19       4      41 ..     244     285 ..     243     365 .. 0.87
   2 ?    7.6   0.1    0.0065       3.5       2      20 ..     582     600 ..     581     622 .. 0.86

  Alignments for each domain:
  == domain 1  score: 5.3 bits;  conditional E-value: 0.034
                 EE--SSSSHHHHHHHGGGGB....S--EEEEE--TT--HHHH CS
       AAA_5   4 LvGppGtgKselaerlaaal....nreveyvqltrdtteedl 41 
                 L+G  G+gK+++ + l+a        ++++  + +  ++++l
  KOO21547.1 244 LIGRNGVGKTTFLKFLSAHQfegiPERLQVLHIEQEVPSSQL 285
                 89***********99998766777777777777777777776 PP

  == domain 2  score: 7.6 bits;  conditional E-value: 0.0065
                 EEEE--SSSSHHHHHHHGG CS
       AAA_5   2 vlLvGppGtgKselaerla 20 
                 v LvGp G+gKs+l + + 
  KOO21547.1 582 VALVGPNGVGKSTLLKIIT 600
                 679***********98775 PP

>> NB-ARC  NB-ARC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.7   0.0     0.056        30      24      40 ..     243     259 ..     228     305 .. 0.83
   2 ?    8.1   0.1    0.0025       1.4      22      43 ..     581     602 ..     571     625 .. 0.87

  Alignments for each domain:
  == domain 1  score: 3.7 bits;  conditional E-value: 0.056
                 EEEESTTSSHHHHHHHH CS
      NB-ARC  24 alvGmgGvGKttlakqi 40 
                 +l G+ GvGKtt +k  
  KOO21547.1 243 GLIGRNGVGKTTFLKFL 259
                 699*********98754 PP

  == domain 2  score: 8.1 bits;  conditional E-value: 0.0025
                 EEEEEESTTSSHHHHHHHHCCS CS
      NB-ARC  22 vvalvGmgGvGKttlakqilnk 43 
                  valvG  GvGK+tl+k i  +
  KOO21547.1 581 RVALVGPNGVGKSTLLKIITGE 602
                 589*************988765 PP

>> AAA_7  P-loop containing dynein motor region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.0   0.0     0.059        32      27      52 ..     233     258 ..     231     294 .. 0.80
   2 ?    8.0   0.1    0.0034       1.8      30      58 ..     576     604 ..     570     611 .. 0.83

  Alignments for each domain:
  == domain 1  score: 4.0 bits;  conditional E-value: 0.059
       AAA_7  27 elllknkkpvllvGptGtGKtviikd 52 
                 +l l ++++  l+G  G+GKt+ +k 
  KOO21547.1 233 DLTLVHGRKYGLIGRNGVGKTTFLKF 258
                 56778899999***********9886 PP

  == domain 2  score: 8.0 bits;  conditional E-value: 0.0034
       AAA_7  30 lknkkpvllvGptGtGKtviikdllkkld 58 
                 l+ +  v lvGp G+GK++++k ++ +l+
  KOO21547.1 576 LDMSSRVALVGPNGVGKSTLLKIITGELE 604
                 5677899*************998877776 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.5   0.0    0.0078       4.2       4      54 ..     244     308 ..     243     354 .. 0.59
   2 ?    0.5   0.2       1.2   6.3e+02      38      67 ..     475     507 ..     425     535 .. 0.66
   3 ?    8.3   0.0    0.0046       2.5       2      22 ..     582     602 ..     582     631 .. 0.86

  Alignments for each domain:
  == domain 1  score: 7.5 bits;  conditional E-value: 0.0078
      AAA_33   4 lvGlpGsGKstlaerllkklg........avllssdtlrrrlfg......tdqqsktdytrvldr 54 
                 l+G +G+GK+t+++ l +++         + ++++ + +++l +      td +++  ++++++ 
  KOO21547.1 244 LIGRNGVGKTTFLKFLSAHQFegiperlqVLHIEQEVPSSQLSVletvlaTDLERIALLAEAKEL 308
                 5899**********995333344544444666666664444444332222444444444444444 PP

  == domain 2  score: 0.5 bits;  conditional E-value: 1.2
      AAA_33  38 fgtdqqsktdytr...vldrlyqilnelarkal 67 
                 + +++ ++ + +r   + d+++++++ ++++ +
  KOO21547.1 475 RQNERMRDAQASRmrdAQDKTRAHMESFIQRFR 507
                 222222222222211144445555555555544 PP

  == domain 3  score: 8.3 bits;  conditional E-value: 0.0046
      AAA_33   2 vllvGlpGsGKstlaerllkk 22 
                 v lvG++G+GKstl++ +  +
  KOO21547.1 582 VALVGPNGVGKSTLLKIITGE 602
                 569***********9866655 PP

>> SbcCD_C  Putative exonuclease SbcCD, C subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   0.0       2.9   1.6e+03      63      77 ..     398     412 ..     373     416 .. 0.75
   2 ?   10.8   0.0    0.0008      0.43      28      89 ..     667     715 ..     658     716 .. 0.86

  Alignments for each domain:
  == domain 1  score: -0.6 bits;  conditional E-value: 2.9
     SbcCD_C  63 alrlvfLDEAFsklD 77 
                 a+++++LDE  + lD
  KOO21547.1 398 APDVLLLDEPTNHLD 412
                 578889999888888 PP

  == domain 2  score: 10.8 bits;  conditional E-value: 0.0008
     SbcCD_C  28 rssgtlSGGekqflaylalaaalaalyssaegrepalrlvfLDEAFsklDeesiatllelle 89 
                 ++++tlSGG+k          a+a+ +++      ++ l++LDE  + lD + +++l+ +l 
  KOO21547.1 667 QRMSTLSGGQK-------SRVAFAQIMWQ------RPHLLLLDEPTNHLDLDAVEALIHALV 715
                 78899999999.......55678899999......599******************999875 PP

>> AAA_14  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.2   0.0     0.074        40       7      37 ..     244     277 ..     239     352 .. 0.75
   2 ?    6.6   0.0     0.014       7.6       5      25 ..     582     602 ..     579     640 .. 0.87

  Alignments for each domain:
  == domain 1  score: 4.2 bits;  conditional E-value: 0.074
      AAA_14   7 itGaRrvGKTtllkqlikell...vkkesilyin 37 
                 + G   vGKTt+lk l  +++    ++ ++l i+
  KOO21547.1 244 LIGRNGVGKTTFLKFLSAHQFegiPERLQVLHIE 277
                 778889*******999888887643334444444 PP

  == domain 2  score: 6.6 bits;  conditional E-value: 0.014
      AAA_14   5 lvitGaRrvGKTtllkqlike 25 
                 ++++G+  vGK+tllk +  e
  KOO21547.1 582 VALVGPNGVGKSTLLKIITGE 602
                 6899**********9876655 PP

>> TsaE  Threonylcarbamoyl adenosine biosynthesis protein TsaE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.1   0.1     0.078        42      22      40 ..     242     260 ..     224     272 .. 0.82
   2 ?    6.4   0.1     0.016       8.7      19      44 ..     579     604 ..     563     616 .. 0.78

  Alignments for each domain:
  == domain 1  score: 4.1 bits;  conditional E-value: 0.078
                 EEEEESTTSSHHHHHHHHH CS
        TsaE  22 ilLeGdLGaGKTtlvrgla 40 
                   L G  G+GKTt+ + l 
  KOO21547.1 242 YGLIGRNGVGKTTFLKFLS 260
                 6689999*******99875 PP

  == domain 2  score: 6.4 bits;  conditional E-value: 0.016
                 TEEEEEEESTTSSHHHHHHHHHHHTT CS
        TsaE  19 gdvilLeGdLGaGKTtlvrglakalg 44 
                 ++ ++L G+ G+GK+tl + +  +l+
  KOO21547.1 579 SSRVALVGPNGVGKSTLLKIITGELE 604
                 4569***************9998885 PP

>> dNK  Deoxynucleoside kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.1   0.0     0.033        18       5      29 ..     246     269 ..     243     300 .. 0.83
   2 ?    4.3   0.0     0.059        32       4      23 ..     585     604 ..     582     630 .. 0.87

  Alignments for each domain:
  == domain 1  score: 5.1 bits;  conditional E-value: 0.033
                 ESTTSSHHHHHHHHHCCSTCEEEE- CS
         dNK   5 GnIgaGKstlvklLskklgvkvfeE 29 
                 G  g+GK+t++k+Ls +  ++ ++E
  KOO21547.1 246 GRNGVGKTTFLKFLSAHQ-FEGIPE 269
                 5669**********9987.777777 PP

  == domain 2  score: 4.3 bits;  conditional E-value: 0.059
                 EESTTSSHHHHHHHHHCCST CS
         dNK   4 eGnIgaGKstlvklLskklg 23 
                  G+ g+GKstl+k+++ +l+
  KOO21547.1 585 VGPNGVGKSTLLKIITGELE 604
                 5889**********998886 PP

>> PduV-EutP  Ethanolamine utilisation - propanediol utilisation
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.5   0.0     0.051        27       6      25 ..     244     263 ..     240     279 .. 0.87
   2 ?    4.4   0.0     0.053        29       2      24 ..     580     602 ..     579     604 .. 0.89

  Alignments for each domain:
  == domain 1  score: 4.5 bits;  conditional E-value: 0.051
   PduV-EutP   6 liGkvgsGKttLtqalkgee 25 
                 liG+ g+GKtt  + l+ ++
  KOO21547.1 244 LIGRNGVGKTTFLKFLSAHQ 263
                 8***********99998866 PP

  == domain 2  score: 4.4 bits;  conditional E-value: 0.053
   PduV-EutP   2 kkilliGkvgsGKttLtqalkge 24 
                 +++ l+G+ g+GK tL + ++ge
  KOO21547.1 580 SRVALVGPNGVGKSTLLKIITGE 602
                 6899*************999875 PP

>> Rad17  Rad17 P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.8   0.0      0.75   4.1e+02      50      70 ..     244     264 ..     237     317 .. 0.80
   2 ?    8.0   0.0    0.0046       2.5      50      75 ..     584     609 ..     576     648 .. 0.81

  Alignments for each domain:
  == domain 1  score: 0.8 bits;  conditional E-value: 0.75
       Rad17  50 isGPsGCgkstvvkvLskelg 70 
                 + G  G gk+t +k Ls    
  KOO21547.1 244 LIGRNGVGKTTFLKFLSAHQF 264
                 56899***********97655 PP

  == domain 2  score: 8.0 bits;  conditional E-value: 0.0046
       Rad17  50 isGPsGCgkstvvkvLskelgiklre 75 
                 + GP G gkst +k+++ el + +  
  KOO21547.1 584 LVGPNGVGKSTLLKIITGELEPTVGS 609
                 68***************999887765 PP

>> Ras  Ras family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.7   0.0     0.038        21       4      25 ..     244     265 ..     241     281 .. 0.88
   2 ?    4.2   0.1     0.054        29       2      17 ..     582     597 ..     581     615 .. 0.86

  Alignments for each domain:
  == domain 1  score: 4.7 bits;  conditional E-value: 0.038
                 EEESTTSSHHHHHHHHHHSSCS CS
         Ras   4 lvGdsavGKtslllrfvkdkFk 25 
                 l+G ++vGKt++l     ++F+
  KOO21547.1 244 LIGRNGVGKTTFLKFLSAHQFE 265
                 8***********9988888886 PP

  == domain 2  score: 4.2 bits;  conditional E-value: 0.054
                 EEEEESTTSSHHHHHH CS
         Ras   2 lvlvGdsavGKtslll 17 
                 + lvG ++vGK++ll 
  KOO21547.1 582 VALVGPNGVGKSTLLK 597
                 789**********986 PP

>> FeoB_N  Ferrous iron transport protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.6   0.0      0.65   3.5e+02       4      22 ..     243     261 ..     240     265 .. 0.83
   2 ?    7.8   0.0    0.0039       2.1       2      23 ..     581     602 ..     580     613 .. 0.87

  Alignments for each domain:
  == domain 1  score: 0.6 bits;  conditional E-value: 0.65
                 EEEESTTSSHHHHHHHHHT CS
      FeoB_N   4 alvGnpnvGkttlfnaltg 22 
                  l+G   vGktt++  l+ 
  KOO21547.1 243 GLIGRNGVGKTTFLKFLSA 261
                 699**********998875 PP

  == domain 2  score: 7.8 bits;  conditional E-value: 0.0039
                 EEEEEESTTSSHHHHHHHHHTT CS
      FeoB_N   2 tvalvGnpnvGkttlfnaltga 23 
                 +valvG   vGk+tl+  +tg 
  KOO21547.1 581 RVALVGPNGVGKSTLLKIITGE 602
                 69******************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (812 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1136  (0.063361); expected 358.6 (0.02)
Passed bias filter:                      704  (0.039266); expected 358.6 (0.02)
Passed Vit filter:                       110  (0.00613531); expected 17.9 (0.001)
Passed Fwd filter:                        37  (0.0020637); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              33  [number of targets reported over threshold]
# CPU time: 0.89u 0.33s 00:00:01.22 Elapsed: 00:00:00.47
# Mc/sec: 5157.13
//
Query:       KOO21548.1  [L=421]
Description: conserved unknown protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    5.8e-06   26.1   3.5    1.2e-05   25.1   3.5    1.5  1  STI1         STI1 domain
  ------ inclusion threshold ------
       0.11   12.3   0.3       0.32   10.7   0.3    1.7  1  DUF3094      Protein of unknown function (DUF3094)
       0.17   11.4   0.0        0.3   10.7   0.0    1.4  1  DUF2208      Predicted membrane protein (DUF2208)
       0.32   11.5   2.1        0.6   10.6   2.1    1.5  1  PNTB_4TM     4TM region of pyridine nucleotide transhydrogena
       0.53    9.4   3.4       0.78    8.9   3.4    1.2  1  7tm_7        7tm Chemosensory receptor
        1.5    8.6   4.4         12    5.8   0.1    3.5  4  SAP          SAP domain
        1.8    8.2   8.8         16    5.1   8.8    2.0  1  Tetraspanin  Tetraspanin family


Domain annotation for each model (and alignments):
>> STI1  STI1 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.1   3.5   4.7e-09   1.2e-05       2      44 ..     359     403 ..     358     410 .. 0.93

  Alignments for each domain:
  == domain 1  score: 25.1 bits;  conditional E-value: 4.7e-09
        STI1   2 pelfaklaanPetrellsDPefvakleeiqs.NPqalqqym.sDp 44 
                 p++++ + ++Pe+++ll +P+++  ++++++ +Pqa+++++ sD 
  KOO21548.1 359 PDMLQAATQDPEIMALLRNPKLQDLMRKMMAaGPQAASEMLsSDA 403
                 9*****************************99********98775 PP

>> DUF3094  Protein of unknown function (DUF3094)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.3   0.00013      0.32      26      46 ..      10      30 ..       8      35 .. 0.92

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00013
     DUF3094 26 qPFrpWlllvvvlavvigLGl 46
                + Fr Wlll+ +  v ++LG+
  KOO21548.1 10 RAFRSWLLLLCITQVAVALGM 30
                57******************8 PP

>> DUF2208  Predicted membrane protein (DUF2208)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   0.00012       0.3      50     131 ..      96     178 ..      54     179 .. 0.71

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00012
     DUF2208  50 erkkleevesgktLfeEknalkliekDeelqkelkeqlkasmitlll.lliviilffllyryiiplassllgevleeklarfl 131
                 + +++++++ + +Lf+E + + ++  D+ l  +  + ++  +++ +  ll++++   +l +++++ ++   +  +++ l +f+
  KOO21548.1  96 SLSSADQSSAACRLFREGELTRAQLADRGLDCDAVQHTTRHVSYAVGvLLLLLLASCFLAKAYSEKLQDKENDEQDRALVNFV 178
                 467788999999*******************9776666666666666255555555556666666555555445577777775 PP

>> PNTB_4TM  4TM region of pyridine nucleotide transhydrogenase, mitoch
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   2.1   0.00024       0.6       3      47 ..      20      65 ..      18      99 .. 0.75

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00024
    PNTB_4TM  3 tvfvLalfvGyeviwkVtpaLhtPLms.vtnaisgiiivgallalg 47
                 +  +a+ +G++ i + t++Lh PL   +t+a+ ++ +++a + + 
  KOO21548.1 20 CITQVAVALGMYYIVSATHVLHDPLSElFTEAVAALCAIAACIGIV 65
                567799*******************863699****99999988766 PP

>> 7tm_7  7tm Chemosensory receptor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.9   3.4   0.00031      0.78     118     250 ..      12     154 ..       3     158 .. 0.82

  Alignments for each domain:
  == domain 1  score: 8.9 bits;  conditional E-value: 0.00031
       7tm_7 118 krrfnrllllllvliillllvtll....gylllsqyftlvlllllyllpylvlqlllllyfllllliy.ellrllnerLkqlvrelrgrseseq..... 206
                 +r++ +ll ++ v+++l + +++      +  ls+ ft ++  l+ + + + +  ++   + +ll+ y ++l+ l    +  v +l+ +++s+      
  KOO21548.1  12 FRSWLLLLCITQVAVALGMYYIVSathvLHDPLSELFTEAVAALCAIAACIGIVGVCASSRPMLLFFYiNQLWGLANVSTFAVISLSSADQSSAacrlf 110
                 355555555555555555555555888889999999999999999999999999999999999999999999999999999999999999988889876 PP

       7tm_7 207 flreqsllalrellrlyrrlselvrelndifglqlllillssfi 250
                 + +e +  +l      ++++++++r+++ + g++lll+l+s+f+
  KOO21548.1 111 REGELTRAQLADRGLDCDAVQHTTRHVSYAVGVLLLLLLASCFL 154
                 66666666699999*****************************8 PP

>> SAP  SAP domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.0      0.77     2e+03      10      20 ..     117     127 ..     117     128 .. 0.84
   2 ?    1.8   0.0     0.085   2.2e+02       8      21 ..     202     215 ..     201     216 .. 0.88
   3 ?    5.8   0.1    0.0047        12       3      17 ..     271     285 ..     270     298 .. 0.78
   4 ?   -0.6   0.2      0.46   1.2e+03       3      16 ..     374     387 ..     372     387 .. 0.86

  Alignments for each domain:
  == domain 1  score: -1.3 bits;  conditional E-value: 0.77
                 HHHHHHTT--T CS
         SAP  10 KeeLkkrGLpt 20 
                 ++ L+ rGL++
  KOO21548.1 117 RAQLADRGLDC 127
                 78899****86 PP

  == domain 2  score: 1.8 bits;  conditional E-value: 0.085
                 HHHHHHHHTT--TT CS
         SAP   8 eLKeeLkkrGLpts 21 
                 +L+++L++r  +t+
  KOO21548.1 202 DLQSALRSRDADTA 215
                 8********98885 PP

  == domain 3  score: 5.8 bits;  conditional E-value: 0.0047
                 T--HHHHHHHHHHTT CS
         SAP   3 kltVaeLKeeLkkrG 17 
                  ++V+e K+eL  r 
  KOO21548.1 271 GMKVSEIKAELDLRK 285
                 6**********8776 PP

  == domain 4  score: -0.6 bits;  conditional E-value: 0.46
                 T--HHHHHHHHHHT CS
         SAP   3 kltVaeLKeeLkkr 16 
                 +l+ ++L+++++k+
  KOO21548.1 374 LLRNPKLQDLMRKM 387
                 6899******9985 PP

>> Tetraspanin  Tetraspanin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.1   8.8    0.0062        16      11     107 ..      17     116 ..      11     271 .. 0.76

  Alignments for each domain:
  == domain 1  score: 5.1 bits;  conditional E-value: 0.0062
                  XXXXXXXXXXXXXXXXXXXXX.....................XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--HHH.. CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.. RF
  Tetraspanin  11 lfwligivllavGvwlrlkhaeaalacllsesaedpailaillivvGvllfllgflGcigalkenkcllltfsllllvlfllelaagilgfvfsdk.. 106
                  l++ i  v++a+G+++++    +      +++    +  + +  +v +l ++ +++G++g++  ++ +ll+f +  l  ++   +++++ +   d+  
   KOO21548.1  17 LLLCITQVAVALGMYYIV----S------ATHVLHDPLSELFTEAVAALCAIAACIGIVGVCASSRPMLLFFYINQLWGLANVSTFAVISLSSADQss 104
                  455667788888888832....2......2233344455567888999999999************99999988888777777777777777777755 PP

                  ............ CS
                  ...........x RF
  Tetraspanin 107 ...........a 107
                             +
   KOO21548.1 105 aacrlfregelT 116
                  555555555550 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (421 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1093  (0.0609627); expected 358.6 (0.02)
Passed bias filter:                      703  (0.0392102); expected 358.6 (0.02)
Passed Vit filter:                        53  (0.0029561); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.55u 0.28s 00:00:00.83 Elapsed: 00:00:00.42
# Mc/sec: 3037.71
//
Query:       KOO21549.1  [L=544]
Description: enhanced disease susceptibility, partial [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.5e-18   66.9  30.7    5.8e-18   65.1  10.5    3.9  4  MatE             MatE
    7.5e-06   26.1   7.4    7.5e-06   26.1   7.4    4.2  4  Polysacc_synt_C  Polysaccharide biosynthesis C-terminal domai


Domain annotation for each model (and alignments):
>> MatE  MatE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.1  10.5   6.5e-22   5.8e-18       1     159 [.      78     237 ..      78     239 .. 0.95
   2 ?   -1.7   0.2      0.22   1.9e+03       3      34 ..     253     284 ..     249     293 .. 0.56
   3 !    4.5   0.2    0.0028        25      17      40 ..     335     358 ..     320     373 .. 0.86
   4 !   10.3   2.2   4.7e-05      0.42      67     145 ..     404     482 ..     401     497 .. 0.90

  Alignments for each domain:
  == domain 1  score: 65.1 bits;  conditional E-value: 6.5e-22
        MatE   1 PialenllesllslidtllvgrlgskalAavsialsilsllfvfllglstalttlvgqalGaknfkrakealrqglilllllsliiallvllfseqils 99 
                 P++ + l   ++s +dt +vg+ ++++lAa++ a++++    ++++ l++a+t+l + al a++ ++a  +l  +l+++ll++l +++++ ++ +  l+
  KOO21549.1  78 PTLAALLSSEVMSVVDTAVVGSCSATELAALGPATMLVDSSAYLFFWLNVATTSLFATALAAGDQNEAFSTLSDALYVALLCGLGVSVFIACLGPATLQ 176
                 77888889999*************************************************************************************999 PP

        MatE 100 lftqdee.vlelakrylrililgipalalqlvlsgilrgagktkvplyislislllnipln 159
                 l+ +++  v+++a rylri  +g+pa+++ lvl++++ ga+++  pl ++l++  ln+ l+
  KOO21549.1 177 LICASALeVVPAATRYLRIRMFGYPAFLVGLVLQAACLGAKDSLSPLLVLLVCGALNLGLD 237
                 99777645*********************************************99998776 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 0.22
        MatE   3 alenllesllslidtllvgrlgskalAavsia 34 
                 + + +++ l ++++ ++v r   + +Aa++++
  KOO21549.1 253 IATLAAQLLQTALLAYVVQRKKRRGVAAAAAV 284
                 44445555555555555555566666665555 PP

  == domain 3  score: 4.5 bits;  conditional E-value: 0.0028
        MatE  17 tllvgrlgskalAavsialsilsl 40 
                 + l+++ g  +lAa+++ +si+++
  KOO21549.1 335 MTLAASTGVASLAAHQVLNSIFFV 358
                 5678889**************987 PP

  == domain 4  score: 10.3 bits;  conditional E-value: 4.7e-05
        MatE  67 rakealrqglilllllsliiallvllfseqilslftqdeevlelakrylrililgipalalqlvlsgilrgagktkvpl 145
                 +a++  r+ l l++ ++++++ +++l +  +  lft+d  v++++ r  ++l++ +++  +++++ g l g  ++++ +
  KOO21549.1 404 AARRLSRRLLRLSISMGAFVSTAAYLVTTRLSTLFTSDVSVTAQVLRCASLLFVALLLHPPTMASEGLLIGSLEVRFLA 482
                 678889999***********************************************************99987777655 PP

>> Polysacc_synt_C  Polysaccharide biosynthesis C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.9      0.36   3.2e+03     113     137 ..     146     169 ..     106     171 .. 0.53
   2 !   26.1   7.4   8.3e-10   7.5e-06       1      97 [.     192     293 ..     192     330 .. 0.79
   3 ?    0.3   0.5     0.074   6.6e+02      93     128 ..     415     449 ..     396     464 .. 0.46
   4 ?   -1.8   3.9      0.33     3e+03       5      69 ..     455     519 ..     448     539 .. 0.70

  Alignments for each domain:
  == domain 1  score: -1.9 bits;  conditional E-value: 0.36
  Polysacc_synt_C 113 lgllllaal.alllavlvgalvYlll 137
                      +++l++ al + ll++ +g+ v++++
       KOO21549.1 146 FSTLSD-ALyVALLCG-LGVSVFIAC 169
                      222222.342444444.677777665 PP

  == domain 2  score: 26.1 bits;  conditional E-value: 8.3e-10
  Polysacc_synt_C   1 vLailalsiiflslstvlssiLqglgrqkialkalvigalvklilnllli..plfgivGaaiatvlallvvavlnlyalrrllgikl...ellr 89 
                      +L+i +++ + + +  vl++   g +    +l++l+++ +++l+l l+l+    +gi Gaaiat++a+l+ ++l+ y ++r+ +  +     + 
       KOO21549.1 192 YLRIRMFGYPAFLVGLVLQAACLGAKDSLSPLLVLLVCGALNLGLDLVLVrsCGMGIGGAAIATLAAQLLQTALLAYVVQRKKRRGVaaaAAVA 285
                      589999999*****************************************544567899*********************98776664443233 PP

  Polysacc_synt_C  90 rllkplla 97 
                      +   p+la
       KOO21549.1 286 TSASPVLA 293
                      33344444 PP

  == domain 3  score: 0.3 bits;  conditional E-value: 0.074
  Polysacc_synt_C  93 kpllaalvmgivvylllllllgllllaalalllavl 128
                        + ++++++ ++yl++  l +l+++  +++ ++vl
       KOO21549.1 415 LSISMGAFVSTAAYLVTTRLSTLFTSD-VSVTAQVL 449
                      334444444444454444444444333.44444444 PP

  == domain 4  score: -1.8 bits;  conditional E-value: 0.33
  Polysacc_synt_C   5 lalsiiflslstvlssiLqglgrqkialkalvigalvklilnllli.plfgivGaaiatvlallvv 69 
                      l ++++++  ++ + ++L+g  ++++++k+ ++ +++ l   ++    ++g++ a++at++ + +v
       KOO21549.1 455 LFVALLLHPPTMASEGLLIGSLEVRFLAKSYAANVAIFLTALYVVSkRQLGLL-AVWATLAMFQLV 519
                      56666777777888888888888888888888888877777777775566644.677777666544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (544 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       519  (0.0289475); expected 358.6 (0.02)
Passed bias filter:                      215  (0.0119917); expected 358.6 (0.02)
Passed Vit filter:                        10  (0.000557756); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.49u 0.25s 00:00:00.74 Elapsed: 00:00:00.41
# Mc/sec: 4007.74
//
Query:       KOO21550.1  [L=851]
Description: hypothetical protein Ctob_000465 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
        7.3    7.0  10.0       0.31   11.4   0.3    3.6  4  HBS1_N    HBS1 N-terminus


Domain annotation for each model (and alignments):
>> HBS1_N  HBS1 N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.0       0.3   5.3e+03      25      41 ..     266     282 ..     238     292 .. 0.76
   2 ?   11.4   0.3   1.7e-05      0.31      10      45 ..     485     520 ..     476     528 .. 0.84
   3 ?   -2.4   0.0      0.35   6.2e+03      40      57 ..     663     678 ..     641     684 .. 0.61
   4 ?   -1.7   0.8      0.21   3.8e+03      20      54 ..     717     750 ..     688     752 .. 0.76

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 0.3
      HBS1_N  25 LrscldevrevLgeeas 41 
                 Lr++ ++vr++L+e ++
  KOO21550.1 266 LREAEAQVRAALAEGSA 282
                 67777899999995544 PP

  == domain 2  score: 11.4 bits;  conditional E-value: 1.7e-05
      HBS1_N  10 eeeeeeeLsdedqarLrscldevrevLgeeaskvtv 45 
                 + +++e L +e  ++Lr +++++r++L++e+s+v++
  KOO21550.1 485 ARDDAEALKNEATEKLRLMTEQIRKALKTEESEVAI 520
                 4456669*********************99998765 PP

  == domain 3  score: -2.4 bits;  conditional E-value: 0.35
      HBS1_N  40 askvtvtekqikeAlwky 57 
                 +      ++q+++A +k 
  KOO21550.1 663 DRA--SRDRQMEQAAIKA 678
                 222..4799999998875 PP

  == domain 4  score: -1.7 bits;  conditional E-value: 0.21
      HBS1_N  20 edqarLrscldevrevLgeeaskvtvtekqikeAl 54 
                 e+q r++s  ++ + +L e a  ++++++q + A+
  KOO21550.1 717 EEQRRMASSAAREKRQLMEAAV-ESASQAQAHAAV 750
                 8899999999988888885555.478888888776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (851 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      3353  (0.187015); expected 358.6 (0.02)
Passed bias filter:                      528  (0.0294495); expected 358.6 (0.02)
Passed Vit filter:                       119  (0.00663729); expected 17.9 (0.001)
Passed Fwd filter:                        38  (0.00211947); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 1.64u 0.39s 00:00:02.02 Elapsed: 00:00:00.59
# Mc/sec: 4374.27
//
Query:       KOO21551.1  [L=756]
Description: aaa ATPase domain-containing protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.5e-48  164.4   0.0    1.4e-46  158.8   0.0    2.5  2  AAA_2            AAA domain (Cdc48 subfamily)
    1.8e-32  111.3   1.1    1.8e-32  111.3   1.1    2.3  2  AAA_lid_9        AAA lid domain
    2.8e-23   82.8   0.0    2.5e-12   47.3   0.0    2.8  2  AAA              ATPase family associated with various cellul
    1.2e-15   57.7   0.1    4.4e-10   39.7   0.0    3.5  2  AAA_5            AAA domain (dynein-related subfamily)
    3.5e-13   50.3   9.1    4.3e-06   27.2   0.1    5.1  5  AAA_16           AAA ATPase domain
      9e-10   38.3   0.0      3e-05   23.5   0.0    3.6  2  TniB             Bacterial TniB protein
    5.5e-09   36.4   5.3     0.0015   18.8   0.2    4.9  3  AAA_22           AAA domain
    1.2e-07   31.5   0.1    0.00024   20.9   0.0    2.8  2  Sigma54_activat  Sigma-54 interaction domain
    6.5e-07   29.2   0.0      0.042   13.6   0.0    2.8  2  IstB_IS21        IstB-like ATP binding protein
    1.2e-06   28.0   0.0       0.19   11.1   0.0    3.5  3  Mg_chelatase     Magnesium chelatase, subunit ChlI
    1.6e-06   28.5   0.0       0.36   11.3   0.0    3.5  3  RNA_helicase     RNA helicase
    1.6e-06   28.1   0.0    5.2e-06   26.4   0.0    2.0  1  ClpB_D2-small    C-terminal, D2-small domain, of ClpB protein
    2.1e-06   27.4   0.0      0.011   15.3   0.0    2.6  2  AAA_7            P-loop containing dynein motor region
    2.1e-06   27.8   0.0      0.019   15.0   0.0    2.5  2  AAA_14           AAA domain
    6.4e-06   26.2   0.1        1.9    8.3   0.0    3.6  3  ATPase_2         ATPase domain predominantly from Archaea
    6.8e-06   26.7   0.4      0.098   13.1   0.0    3.0  3  AAA_23           AAA domain
    1.3e-05   25.8   0.1       0.05   14.2   0.0    3.1  2  AAA_18           AAA domain
    2.8e-05   24.3   0.0      0.085   13.1   0.0    2.5  2  Roc              Ras of Complex, Roc, domain of DAPkinase
    4.7e-05   23.9   0.2     0.0084   16.6   0.0    3.2  3  ABC_tran         ABC transporter
    0.00012   22.1   0.0       0.38   10.8   0.0    2.5  2  TsaE             Threonylcarbamoyl adenosine biosynthesis pro
    0.00012   21.8   1.8       0.46   10.2   0.0    3.7  2  RuvB_N           Holliday junction DNA helicase RuvB P-loop d
    0.00014   21.8   0.0       0.21   11.5   0.0    2.6  2  RsgA_GTPase      RsgA GTPase
    0.00015   22.1   0.0       0.43   10.9   0.0    3.6  3  AAA_19           AAA domain
    0.00015   21.9   3.6      0.092   12.9   0.0    3.7  2  AAA_33           AAA domain
     0.0002   21.2   0.2       0.26   11.1   0.1    3.2  2  AAA_3            ATPase family associated with various cellul
    0.00058   19.8   0.0       0.47   10.4   0.0    2.8  2  NACHT            NACHT domain
    0.00063   19.5   0.0       0.94    9.2   0.0    2.4  2  AAA_24           AAA domain
     0.0017   18.0   5.2       0.13   11.8   0.0    3.8  3  AAA_25           AAA domain
     0.0023   18.2   7.6       0.37   11.0   0.0    4.1  2  AAA_28           AAA domain
     0.0024   17.8   0.0        2.5    8.0   0.0    2.6  2  NTPase_1         NTPase
     0.0027   17.4   0.0       0.26   10.9   0.0    2.5  2  SRP54            SRP54-type protein, GTPase domain
     0.0029   16.9   0.8       0.34   10.2   0.0    2.7  2  Zeta_toxin       Zeta toxin
     0.0035   16.6   3.6       0.24   10.5   0.0    3.3  2  DUF815           Protein of unknown function (DUF815)
     0.0049   16.0   0.1       0.46    9.5   0.1    2.7  2  MCM              MCM P-loop domain
     0.0061   16.6   0.0        3.3    7.7   0.0    3.1  3  ResIII           Type III restriction enzyme, res subunit
     0.0082   16.2   0.0      0.044   13.9   0.0    2.1  2  Torsin           Torsin
     0.0096   15.7   0.0       0.17   11.6   0.0    2.5  2  PduV-EutP        Ethanolamine utilisation - propanediol utili
     0.0097   15.7   0.0        6.6    6.4   0.0    2.7  2  ATP_bind_1       Conserved hypothetical ATP binding protein
  ------ inclusion threshold ------
      0.013   15.6   0.0          2    8.6   0.0    2.9  2  MMR_HSR1         50S ribosome-binding GTPase
      0.013   15.4   0.0        2.9    7.7   0.0    2.5  2  Bac_DnaA         Bacterial dnaA  protein
      0.015   15.0   0.0        3.7    7.3   0.0    2.7  2  AAA_29           P-loop containing region of AAA domain
      0.016   14.3   0.0      0.086   11.9   0.0    2.1  2  T2SSE            Type II/IV secretion system protein
      0.037   13.6   0.0          4    7.0   0.0    2.3  2  Ras              Ras family
      0.074   11.5   6.4       0.13   10.7   6.4    1.3  1  Borrelia_P83     Borrelia P83/100 protein
      0.093   12.6   0.0         12    5.7   0.0    2.4  2  Rad17            Rad17 P-loop domain
       0.11   12.4   0.1       0.44   10.4   0.1    2.1  1  DAHP_snth_FXD    DAHP synthase ferredoxin-like domain
       0.16   11.7   0.0        6.9    6.4   0.0    3.1  3  AAA_21           AAA domain, putative AbiEii toxin, Type IV T
       0.16   11.7   0.0       0.88    9.3   0.0    2.1  2  CLP1_P           mRNA cleavage and polyadenylation factor CLP
       0.51    9.7   7.4        0.9    8.8   7.4    1.4  1  DUF4407          Domain of unknown function (DUF4407)
       0.96    9.2  13.4        2.4    7.9  13.4    1.6  1  OEP              Outer membrane efflux protein
        1.5    9.1   7.5        4.9    7.5   7.5    1.9  1  OmpH             Outer membrane protein (OmpH-like)
        2.2    8.4   6.5        4.6    7.3   6.5    1.5  1  UPF0242          Uncharacterised protein family (UPF0242) N-t
        7.3    7.0   6.9         45    4.5   0.5    3.7  3  AAA_17           AAA domain


Domain annotation for each model (and alignments):
>> AAA_2  AAA domain (Cdc48 subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.0   0.0      0.28        95       5      78 ..      92     172 ..      88     188 .. 0.63
   2 !  158.8   0.0   4.1e-49   1.4e-46       1     171 []     497     661 ..     497     661 .. 0.97

  Alignments for each domain:
  == domain 1  score: 3.0 bits;  conditional E-value: 0.28
                 -EEEE--TTSSHHHHHHHHHHHTT-....-EEEEEGGG-------THHHHHHHHHTTT-HHHHTTS..............EEEEETGG CS
       AAA_2   5 silllgptgvGktelakalaellfvkkekkliradaselleeeevehlvsrligappgyvgaeegG..............ivllDEid 78 
                 +  l+g+ gvGkt + + la+ +  +k+ +    d++ +    +    v  li  +++  ++ee+               i+++DE+ 
  KOO21551.1  92 NPVLIGEPGVGKTAVVEGLAQRIV-DKDVPESLRDCQVVSL--D----VGALIAGAKYRGEFEERLkavlrdvsdsngqtILFIDELH 172
                 55788999******9999999886.7777777777666666..3....3333333333333333333444555555566788888765 PP

  == domain 2  score: 158.8 bits;  conditional E-value: 4.1e-49
                 -----EEEE--TTSSHHHHHHHHHHHTT-....-EEEEEGGG-------THHHHHHHHHTTT-HHHHTTS............EEEEETGGG-------- CS
       AAA_2   1 rpiisilllgptgvGktelakalaellfvkkekkliradaselleeeevehlvsrligappgyvgaeegG............ivllDEidKihpkessg 87 
                 rp++ +ll+gptgvGkt l kala  lf ++e++++r+d+se+ e    +h+vsrl+gappgyvg+eegG            +vllDE +K+h+     
  KOO21551.1 497 RPLGVFLLVGPTGVGKTQLCKALAGQLF-DSEEAVTRIDMSEYSE----RHSVSRLVGAPPGYVGYEEGGqlteavrrkpysVVLLDEFEKAHK----- 585
                 68899***********************.****************....*********************************************..... PP

                 -----HHHHHHHHHHHH--EE-------EE-TT-EEEEEE--TTHHHHTTTS-STTTTSGGG--HHHHHHTT--HHHHTT--EE CS
       AAA_2  88 advSregVqrdLLqileggtltdkqgrkvdtknilfImtgafgsskisdesrskeeeeekkkeeveeelkkglipEllgRlpei 171
                       +V ++LLq++++g+ltd+qg++vd++ +++ mt+++g++  +  s+   + +ek++ +v+e++ k+l pE+++Rl++i
  KOO21551.1 586 ------EVATLLLQLMDEGQLTDSQGKRVDFRSTIVMMTSNLGADALAGLSE--GQPSEKARPQVMEAVAKHLPPEFVNRLDQI 661
                 ......*******************************************777..5999999********************975 PP

>> AAA_lid_9  AAA lid domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  111.3   1.1   5.3e-35   1.8e-32       2     102 ..     233     333 ..     232     342 .. 0.93
   2 ?   -0.8   1.4       4.2   1.4e+03      68      96 ..     359     387 ..     335     394 .. 0.54

  Alignments for each domain:
  == domain 1  score: 111.3 bits;  conditional E-value: 5.3e-35
   AAA_lid_9   2 eeetieiLrglkekyekhHgvkisdealeaavklSkrYisdrflPdkAIDllDeaaarvrlkkeskpeeleklekelaklekekealekeeekekaerl 100
                  +++++iLrglkeky++hHgv+i+d al aav++++rY+++r+lPdk IDllDeaa+r+r+++eskpe ++++e+++ +l+ e ++leke  ++ a+r 
  KOO21551.1 233 PAQSLTILRGLKEKYQAHHGVHITDGALLAAVQMAHRYLTERKLPDKVIDLLDEAASRLRMQQESKPEPIADMERQVLDLQIELASLEKEIGSAAATRR 331
                 57899**********************************************************************************999877776666 PP

   AAA_lid_9 101 ke 102
                 +e
  KOO21551.1 332 RE 333
                 55 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 4.2
   AAA_lid_9  68 peeleklekelaklekekealekeeekek 96 
                  e+ ++++++l++ +k+ +a+e++ +++k
  KOO21551.1 359 LEQRKTARQRLEQARKDLAAAERDGNFAK 387
                 13345555666666666666666666655 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.3   0.0   7.4e-15   2.5e-12       2     124 ..      94     223 ..      93     228 .. 0.79
   2 !   32.4   0.0   3.1e-10   1.1e-07       2     111 ..     503     621 ..     502     629 .. 0.76

  Alignments for each domain:
  == domain 1  score: 47.3 bits;  conditional E-value: 7.4e-15
                 EEESSTTSSHHHHHHHHHHHH..........THEEEEEETTTCS..SSSTTHHHHHHHHHHHHHHHTSTSEEEEEETGGGHHHHHTTCCCHHHHHHHHH CS
         AAA   2 llyGppGtGKTllakavakel..........gvefleisgsell..skyvgesekkirelfkeakekakpsilfiDEidalaksrsgseseeeervvnq 88 
                 +l+G pG+GKT++++ +a+ +          + +++++++  l+   ky ge e+++++++++++ +++++ilfiDE++ ++++    + e ++++ n 
  KOO21551.1  94 VLIGEPGVGKTAVVEGLAQRIvdkdvpeslrDCQVVSLDVGALIagAKYRGEFEERLKAVLRDVSDSNGQTILFIDELHTVVGAG---AAEGSMDASNL 189
                 599*****************86665555555588********997778***************9999977**************9...77777888888 PP

                 HHHHHHHTTTSSSTEEEEEEESS..GGGSTHHHHS.TTS CS
         AAA  89 Llteldgvkkkeskvivigatnr..pdkldpallr.gRf 124
                 L + l + +       ++gat+   ++ +++   + +Rf
  KOO21551.1 190 LKPPLARGEL-----SCVGATTLaeYRLIEKDAALaRRF 223
                 8777777766.....366666665444454444444565 PP

  == domain 2  score: 32.4 bits;  conditional E-value: 3.1e-10
                 EEESSTTSSHHHHHHHHHHHH...THEEEEEETTTCSSS............STTHHHH.HHHHHHHHHHHTSTS.EEEEEETGGGHHHHHTTCCCHHHH CS
         AAA   2 llyGppGtGKTllakavakel...gvefleisgsellsk............yvgesek.kirelfkeakekakp.silfiDEidalaksrsgseseeee 83 
                 ll+Gp G+GKT l+ka+a +l   +  + +i++se  +             yvg  e  ++ e +   ++k  p s++++DE+++ +k+          
  KOO21551.1 503 LLVGPTGVGKTQLCKALAGQLfdsEEAVTRIDMSEYSERhsvsrlvgappgYVGYEEGgQLTEAV---RRK--PySVVLLDEFEKAHKEV--------- 587
                 9*******************866556688888888885578888888899988866551444444...333..669**********8877......... PP

                 HHHHHHHHHHHHTTTS.........SSTEEEEEEESS CS
         AAA  84 rvvnqLlteldgvkkk.........eskvivigatnr 111
                   +  Ll+ +d+ +           +s +iv++++n 
  KOO21551.1 588 --ATLLLQLMDEGQLTdsqgkrvdfRS-TIVMMTSNL 621
                 ..8888999998887777777777433.677777775 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.9   0.0   0.00012     0.041       3      24 ..      94     116 ..      92     176 .. 0.86
   2 !   39.7   0.0   1.3e-12   4.4e-10       2     122 ..     502     621 ..     501     635 .. 0.85

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 0.00012
                 EEE--SSSSHHHHHHHGGGGB.S CS
       AAA_5   3 lLvGppGtgKselaerlaaal.n 24 
                 +L+G+pG+gK+ ++e la+++  
  KOO21551.1  94 VLIGEPGVGKTAVVEGLAQRIvD 116
                 79****************99852 PP

  == domain 2  score: 39.7 bits;  conditional E-value: 1.3e-12
                 EEEE--SSSSHHHHHHHGGGGB...S--EEEEE--TT--HHHHH--B--..........--------..G-SEEEEESGGG--HHHHHHHHHHHHSSEE CS
       AAA_5   2 vlLvGppGtgKselaerlaaal...nreveyvqltrdtteedlkgrreik.ngttslvdsplvraar..egeilvlDEveraesevlnsLlslleerrl 94 
                 +lLvGp+G+gK++l + la  l   +  v+ + ++++ ++  +   +    +     + + l++a+r    ++++lDE+e+a++ev+  Ll+l++e +l
  KOO21551.1 502 FLLVGPTGVGKTQLCKALAGQLfdsEEAVTRIDMSEYSERHSVSRLVGAPpGYVGYEEGGQLTEAVRrkPYSVVLLDEFEKAHKEVATLLLQLMDEGQL 600
                 69*******************9998888888899998888888777776544455556689*****976679*************************** PP

                 E..-SSSEEE---......-EEEEEESS CS
       AAA_5  95 lleeggelvkaknddllerfrviatanp 122
                   ++ g++v++++      + v++t+n 
  KOO21551.1 601 T-DSQGKRVDFRS------TIVMMTSNL 621
                 9.99999999998......788888885 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.2   0.1   1.3e-08   4.3e-06       2      56 ..      71     119 ..      70     139 .. 0.80
   2 ?    3.0   0.0      0.34   1.2e+02     119     146 ..     146     178 ..     132     196 .. 0.67
   3 ?   -1.0   0.7       5.9     2e+03      86      88 ..     353     355 ..     272     421 .. 0.59
   4 !   16.5   0.0   2.6e-05    0.0087       2      52 ..     471     527 ..     470     551 .. 0.78
   5 ?    4.8   0.0     0.098        33     134     164 ..     569     600 ..     561     608 .. 0.82

  Alignments for each domain:
  == domain 1  score: 27.2 bits;  conditional E-value: 1.3e-08
      AAA_16   2 lvGReeeleqLlsalervrsgrpelvllsGesGvGKsslvrellralekdggifl 56 
                 ++GR+ee+++  ++l r r++ p   +l+Ge+GvGK+++v+ l++++ +++   +
  KOO21551.1  71 VIGRDEEIRRTIQVLARRRKNNP---VLIGEPGVGKTAVVEGLAQRIVDKD---V 119
                 78******888888877777665...899***************9998885...4 PP

  == domain 2  score: 3.0 bits;  conditional E-value: 0.34
      AAA_16 119 llellkrllallsrderplvlvlDdlq.....w 146
                 + e lk+ l+  s    +++l++D+l+      
  KOO21551.1 146 FEERLKAVLRDVSDSNGQTILFIDELHtvvgaG 178
                 556666777555554555********9555544 PP

  == domain 3  score: -1.0 bits;  conditional E-value: 5.9
      AAA_16  86 lde 88 
                  +e
  KOO21551.1 353 TTE 355
                 111 PP

  == domain 4  score: 16.5 bits;  conditional E-value: 2.6e-05
      AAA_16   2 lvGReeeleqLlsalervrsgrp......elvllsGesGvGKsslvrellralekdg 52 
                 +vG ++ l+ +++a++  r+g        ++ ll+G+ GvGK+ l ++l+ +l +++
  KOO21551.1 471 VVGQDHALRVIADAVRVSRAGLQnpdrplGVFLLVGPTGVGKTQLCKALAGQLFDSE 527
                 689999999999999955555445588899*******************98888775 PP

  == domain 5  score: 4.8 bits;  conditional E-value: 0.098
      AAA_16 134 erp.lvlvlDdlqwadeaslqllaaLlrlles 164
                 ++p  v++lD++++a  + ++ll +L+++++ 
  KOO21551.1 569 RKPySVVLLDEFEKAHKEVATLLLQLMDEGQL 600
                 344489*******************9999875 PP

>> TniB  Bacterial TniB protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.5   0.0   8.9e-08     3e-05      24     185 ..      79     229 ..      74     232 .. 0.75
   2 ?    5.4   0.0     0.033        11      37      55 ..     501     519 ..     460     536 .. 0.86

  Alignments for each domain:
  == domain 1  score: 23.5 bits;  conditional E-value: 8.9e-08
        TniB  24 eeLleypkrkrmpnlllvGdsnnGKtmivekFarlhppekd.edaekvpvlvvqappkpdekrlyaaiLealgaplkararvskleqq.vlrllrelkv 120
                 ++ +++  r r +n +l+G++ +GKt++ve  a++  +++  e+ + ++v+ +++            +++  ++    r + ++  ++    + ++ + 
  KOO21551.1  79 RRTIQVLARRRKNNPVLIGEPGVGKTAVVEGLAQRIVDKDVpESLRDCQVVSLDVGA----------LIAGAKY----RGEFEERLKAvLRDVSDSNGQ 163
                 556677788888999999999999999999999887666541455677887777643..........3333333....333333333303334556678 PP

        TniB 121 rvLiiDEihnll.agsarkqreflnalksLgnelkipivlvGteealralrtDpqlasRFepialp 185
                  +L iDE+h ++ ag a+    + n+lk    + +++ v++ t + +r++++D+ la+RF+p+ +p
  KOO21551.1 164 TILFIDELHTVVgAGAAEGSMDASNLLKPPLARGELSCVGATTLAEYRLIEKDAALARRFQPVLVP 229
                 8********987478899999*****************************************9887 PP

  == domain 2  score: 5.4 bits;  conditional E-value: 0.033
        TniB  37 nlllvGdsnnGKtmivekF 55 
                   llvG++ +GKt++++  
  KOO21551.1 501 VFLLVGPTGVGKTQLCKAL 519
                 579************9875 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.8   0.0   0.00015     0.051       4      45 ..      89     131 ..      86     192 .. 0.67
   2 ?   -0.2   0.3       3.2   1.1e+03      45     104 ..     228     292 ..     202     379 .. 0.65
   3 !   18.8   0.2   4.4e-06    0.0015       6     118 ..     500     597 ..     497     621 .. 0.77

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 0.00015
      AAA_22   4 tagilvvtGesGtGKTtllrrlleqldeeakaee.erpevvfv 45 
                 +++  v++Ge+G+GKT +++ l+++ +    +e  ++ +vv+ 
  KOO21551.1  89 RKNNPVLIGEPGVGKTAVVEGLAQRIVDKDVPESlRDCQVVSL 131
                 677789**************99999753322222444444444 PP

  == domain 2  score: -0.2 bits;  conditional E-value: 3.2
      AAA_22  45 vtlpsstsskdllrellralglelka..erlsseellealeqalrarav..ielliiDEaqh.lr 104
                 v  p +  s ++lr l ++++  +      + + + +++ +++l +r+   +++ ++DEa   lr
  KOO21551.1 228 VPEPTPAQSLTILRGLKEKYQAHHGVhiTDGALLAAVQMAHRYLTERKLpdKVIDLLDEAASrLR 292
                 44444446666666666666654433443333344445555555555556555556677666664 PP

  == domain 3  score: 18.8 bits;  conditional E-value: 4.4e-06
      AAA_22   6 gilvvtGesGtGKTtllrrlleqldeeakaeeerpevv.fvtlpsstsskdllrellralglelkaerlsseellealeqalraravielliiDEaqhl 103
                 g+ +++G++G+GKT l++ l+ ql         + e v ++++++ +     ++ + r +g +  +      e   +l++a+r++   +++++DE+++ 
  KOO21551.1 500 GVFLLVGPTGVGKTQLCKALAGQLFD-------SEEAVtRIDMSEYS----ERHSVSRLVGAPPGY---VGYEEGGQLTEAVRRKPY-SVVLLDEFEKA 583
                 5679*******************942.......33333477777666....456677888888888...666667888888888888.89999999999 PP

      AAA_22 104 rseealeeLrsllnl 118
                  ++e+ + L +l++ 
  KOO21551.1 584 -HKEVATLLLQLMDE 597
                 .99999999999883 PP

>> Sigma54_activat  Sigma-54 interaction domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.7   0.0    0.0079       2.7       2      61 ..      72     129 ..      71     178 .. 0.64
   2 !   20.9   0.0   7.1e-07   0.00024      25     124 ..     502     602 ..     474     627 .. 0.84

  Alignments for each domain:
  == domain 1  score: 7.7 bits;  conditional E-value: 0.0079
                      ---SHHHHHHHHHHHHHCTSSS-EEEECSTTSSHHHHHHHHHHHSTTTTS-EEEEETTTS CS
  Sigma54_activat   2 igesealkelleqikkvaktdlsvlitGesGtGKellaraiheaskrkekpfvavncaai 61 
                      ig++e+++++++ +++  +++ +vl  Ge G+GK+ + + + ++   k+ p    +c  +
       KOO21551.1  72 IGRDEEIRRTIQVLARR-RKNNPVL-IGEPGVGKTAVVEGLAQRIVDKDVPESLRDCQVV 129
                      56667777776666554.3344555.5**********99998877766666555555544 PP

  == domain 2  score: 20.9 bits;  conditional E-value: 7.1e-07
                      EEEECSTTSSHHHHHHHHHHHSTTTTS-EEEEETTTS-TTCHHHHHHEBSSSSSTTTSS-BE..HHHHHTTTSEEEEETGGGS-HHHHHHHHHH CS
  Sigma54_activat  25 vlitGesGtGKellaraiheaskrkekpfvavncaaipeelleseLFGhekGaFtGAekekk..GlfekadgGtlfLDeigelplelQekLlrv 116
                       l++G +G+GK+ l +a+  +   +e+ + ++++++++e+   s+L G   G + G e+  +   ++++   ++++LDe ++   e+ + Ll++
       KOO21551.1 502 FLLVGPTGVGKTQLCKALAGQLFDSEEAVTRIDMSEYSERHSVSRLVGAPPG-YVGYEEGGQltEAVRRKPYSVVLLDEFEKAHKEVATLLLQL 594
                      5899*********************************************998.88877755444566777789********************* PP

                      HHHSEEES CS
  Sigma54_activat 117 lqegever 124
                      ++eg+++ 
       KOO21551.1 595 MDEGQLTD 602
                      ****9864 PP

>> IstB_IS21  IstB-like ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.4   0.0   0.00029     0.097      45      76 ..      88     119 ..      74     173 .. 0.72
   2 !   13.6   0.0   0.00012     0.042      50      79 ..     502     531 ..     498     549 .. 0.85

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 0.00029
   IstB_IS21  45 ekkenivllGpsGvGKshlaialgveavragl 76 
                 ++k+n vl+G +GvGK+ +   l+++ v +++
  KOO21551.1  88 RRKNNPVLIGEPGVGKTAVVEGLAQRIVDKDV 119
                 6899*********************9998775 PP

  == domain 2  score: 13.6 bits;  conditional E-value: 0.00012
   IstB_IS21  50 ivllGpsGvGKshlaialgveavraglsvl 79 
                 ++l+Gp+GvGK+ l  al+ +   ++ +v+
  KOO21551.1 502 FLLVGPTGVGKTQLCKALAGQLFDSEEAVT 531
                 689****************99988887776 PP

>> Mg_chelatase  Magnesium chelatase, subunit ChlI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.5   0.0    0.0017      0.59       5      63 ..      71     131 ..      67     153 .. 0.79
   2 !   11.1   0.0   0.00057      0.19       5      64 ..     471     545 ..     468     554 .. 0.66
   3 ?    3.4   0.0      0.13        42     107     202 ..     572     667 ..     542     672 .. 0.71

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 0.0017
  Mg_chelatase   5 vkGq.eeakraleiaaa.GgHnlllvGppGsGKtmlakrlpsllpplseeealevakiasv 63 
                   v+G+ ee +r++++ a   + n +l+G pG GKt + + l++ + + +  e+l   ++ s+
    KOO21551.1  71 VIGRdEEIRRTIQVLARrRKNNPVLIGEPGVGKTAVVEGLAQRIVDKDVPESLRDCQVVSL 131
                   555415567888876651567789***************9999999999999988888886 PP

  == domain 2  score: 11.1 bits;  conditional E-value: 0.00057
  Mg_chelatase   5 vkGqeeakr....aleiaaaGgHn.......lllvGppGsGKtmlakrlpsllpplsee....ealevakiasva 64 
                   v+Gq++a r    a++++ aG  n       +llvGp G GKt l k+l++ l + +e+    ++ e ++ +sv+
    KOO21551.1 471 VVGQDHALRviadAVRVSRAGLQNpdrplgvFLLVGPTGVGKTQLCKALAGQLFDSEEAvtriDMSEYSERHSVS 545
                   666666644222255677777665555555479*****************9997765432222666666666665 PP

  == domain 3  score: 3.4 bits;  conditional E-value: 0.13
  Mg_chelatase 107 nGvLfLDElpefkrkvlevLRePledgevtisrakakvefparfqlvaamNpcpcgklk..dkekectcsekeierYlsklsgplldRidlqvevkk 201
                     v++LDE+ + +++v   L + +++g++t s+  ++v+f +++ ++ + N+   + ++  + + + ++ ++ +e   ++l   +++R+d  v   +
    KOO21551.1 572 YSVVLLDEFEKAHKEVATLLLQLMDEGQLTDSQG-KRVDFRSTIVMM-TSNLGADALAGlsEGQPSEKARPQVMEAVAKHLPPEFVNRLDQIVLFDR 666
                   4699************************997765.678999877655.4555544333300333333445677777777788888888887666655 PP

  Mg_chelatase 202 l 202
                   l
    KOO21551.1 667 L 667
                   5 PP

>> RNA_helicase  RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.9   0.0    0.0057       1.9       3      25 ..      95     117 ..      94     133 .. 0.87
   2 !   11.3   0.0    0.0011      0.36       2      25 ..     503     526 ..     502     546 .. 0.83
   3 ?    4.0   0.0       0.2        66      88     107 .]     602     621 ..     569     621 .. 0.82

  Alignments for each domain:
  == domain 1  score: 8.9 bits;  conditional E-value: 0.0057
  RNA_helicase   3 lyGpsgeGKStlakeLakallkk 25 
                   l G++g+GK+ +++ La+++ +k
    KOO21551.1  95 LIGEPGVGKTAVVEGLAQRIVDK 117
                   78****************99865 PP

  == domain 2  score: 11.3 bits;  conditional E-value: 0.0011
  RNA_helicase   2 wlyGpsgeGKStlakeLakallkk 25 
                   +l+Gp+g+GK++l+k La +l ++
    KOO21551.1 503 LLVGPTGVGKTQLCKALAGQLFDS 526
                   689**************9998754 PP

  == domain 3  score: 4.0 bits;  conditional E-value: 0.2
  RNA_helicase  88 sleekgtlftSkvvivtsNv 107
                   + + k++ f+S +v++tsN+
    KOO21551.1 602 DSQGKRVDFRSTIVMMTSNL 621
                   56789999***********5 PP

>> ClpB_D2-small  C-terminal, D2-small domain, of ClpB protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.4   0.0   1.5e-08   5.2e-06       1      45 [.     667     711 ..     667     715 .. 0.93

  Alignments for each domain:
  == domain 1  score: 26.4 bits;  conditional E-value: 1.5e-08
                    SCHHHHHHHHHHHHHHHHHHSCTTTEEEEEHHHHHHHHHHHTSBT CS
  ClpB_D2-small   1 LtkeelkkIvdlalkklekrlkergvelevtdealdalaekgydp 45 
                    L+++++ +I++l+++k++ rl erg+el+v++ a+ +la +g ++
     KOO21551.1 667 LDRKQIARIAKLEVDKVAGRLDERGLELHVSEGAVHWLAAAGGSK 711
                    899************************************998655 PP

>> AAA_7  P-loop containing dynein motor region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.2   0.0    0.0023      0.77      31      58 ..      88     115 ..      75     174 .. 0.77
   2 !   15.3   0.0   3.1e-05     0.011      36      81 ..     502     547 ..     500     551 .. 0.89

  Alignments for each domain:
  == domain 1  score: 9.2 bits;  conditional E-value: 0.0023
       AAA_7  31 knkkpvllvGptGtGKtviikdllkkld 58 
                 ++k++ +l+G+ G+GKt++++ l +++ 
  KOO21551.1  88 RRKNNPVLIGEPGVGKTAVVEGLAQRIV 115
                 345677899***********99777654 PP

  == domain 2  score: 15.3 bits;  conditional E-value: 3.1e-05
       AAA_7  36 vllvGptGtGKtviikdllkkldkekylsltinfsaqtsanqlqdi 81 
                 +llvGptG+GKt ++k l  +l +++  ++ i +s + + +++ ++
  KOO21551.1 502 FLLVGPTGVGKTQLCKALAGQLFDSEEAVTRIDMSEYSERHSVSRL 547
                 69***************9999999999999*****99988887765 PP

>> AAA_14  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.0   0.0     0.002      0.68       6      79 ..      94     177 ..      90     197 .. 0.73
   2 !   15.0   0.0   5.7e-05     0.019       4      90 ..     501     598 ..     500     612 .. 0.70

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.002
      AAA_14   6 vitGaRrvGKTtllkqlikell.....vkkesilyinldderd...kkla.dpekllelileklke.ekktylflDEiqevpew 79 
                 v+ G   vGKT +++ l+++        + +++  ++ld   +   +k++ ++e+ l+++l+ +++ +++t+lf+DE + v ++
  KOO21551.1  94 VLIGEPGVGKTAVVEGLAQRIVdkdvpESLRDCQVVSLDVGALiagAKYRgEFEERLKAVLRDVSDsNGQTILFIDELHTVVGA 177
                 56677789******999988878886645567777777777774443333345555666666644458**********998665 PP

  == domain 2  score: 15.0 bits;  conditional E-value: 5.7e-05
      AAA_14   4 ilvitGaRrvGKTtllkqlikellvkkesilyinldderdkkladpe...............kllelileklkeekktylflDEiqev.pewekalksl 86 
                 + +++G+  vGKT l+k l+ +l+ ++e +  i++ + +++ +   +               +l e++++    +  ++++lDE  ++ +e+ + l +l
  KOO21551.1 501 VFLLVGPTGVGKTQLCKALAGQLFDSEEAVTRIDMSEYSERHSVS-RlvgappgyvgyeeggQLTEAVRR----KPYSVVLLDEFEKAhKEVATLLLQL 594
                 5789****************9999888999999*99988854332.122333333332222233333333....334569*****98746799999999 PP

      AAA_14  87 vdeg 90 
                 +deg
  KOO21551.1 595 MDEG 598
                 9987 PP

>> ATPase_2  ATPase domain predominantly from Archaea
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.3   0.0    0.0056       1.9       4      47 ..      74     117 ..      72     122 .. 0.77
   2 ?    5.0   0.0     0.057        19     102     133 ..     146     177 ..     128     191 .. 0.84
   3 !    8.2   0.0    0.0064       2.2      22      64 ..     501     542 ..     495     599 .. 0.67

  Alignments for each domain:
  == domain 1  score: 8.3 bits;  conditional E-value: 0.0056
    ATPase_2   4 RekelkeleeilerepneiyfiYGpegsGKtaLlkeiienledk 47 
                 R++e+++  ++l r +++  ++ G  g+GKta++  ++++  dk
  KOO21551.1  74 RDEEIRRTIQVLARRRKNNPVLIGEPGVGKTAVVEGLAQRIVDK 117
                 999**986666666666666666**********99998887655 PP

  == domain 2  score: 5.0 bits;  conditional E-value: 0.057
    ATPase_2 102 vfkaielllekikkkgkkiiiiiDelqklidl 133
                  ++ ++++l++++++  + i++iDel  ++  
  KOO21551.1 146 FEERLKAVLRDVSDSNGQTILFIDELHTVVGA 177
                 678899********************999854 PP

  == domain 3  score: 8.2 bits;  conditional E-value: 0.0064
    ATPase_2  22 iyfiYGpegsGKtaLlkeiienledkdkyviyyialreesisk 64 
                 + ++ Gp g+GKt+L k ++ +l d+++ v   i+++e+s+ +
  KOO21551.1 501 VFLLVGPTGVGKTQLCKALAGQLFDSEEAV-TRIDMSEYSERH 542
                 55678*****************98866555.455555555444 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.3   0.0       3.7   1.3e+03      23      40 ..      94     111 ..      81     127 .. 0.90
   2 ?    6.2   3.4     0.038        13     132     194 ..     288     378 ..     254     382 .. 0.55
   3 !   13.1   0.0   0.00029     0.098      20      64 ..     500     545 ..     495     625 .. 0.72

  Alignments for each domain:
  == domain 1  score: -0.3 bits;  conditional E-value: 3.7
      AAA_23  23 lItGpNGaGKTTildAik 40 
                 +++G+ G GKT++++ + 
  KOO21551.1  94 VLIGEPGVGKTAVVEGLA 111
                 688999*******99875 PP

  == domain 2  score: 6.2 bits;  conditional E-value: 0.038
      AAA_23 132 lnlilflgqerfeefelkdkke.............................rleelekeleeledekkllekl........eqekekekeleeleeele 193
                  +++ ++++++          e                             r +el+ +l  ++++++  +++        eq+k  +++le+ +++l 
  KOO21551.1 288 ASRLRMQQESKP---------EpiadmerqvldlqielaslekeigsaaatRRRELQADLHAKQAKAESANAQwtterralEQRKTARQRLEQARKDLA 377
                 444445555552.........222233333344445222222233334444555555555555555555555487777777777777777777777776 PP

      AAA_23 194 e 194
                  
  KOO21551.1 378 A 378
                 5 PP

  == domain 3  score: 13.1 bits;  conditional E-value: 0.00029
      AAA_23  20 gltlItGpNGaGKTTildAiklaLygetprlsrks.grgfeksdve 64 
                 g++l++Gp+G GKT +  A+   L+   +   r + ++ +e+++v+
  KOO21551.1 500 GVFLLVGPTGVGKTQLCKALAGQLFDSEEAVTRIDmSEYSERHSVS 545
                 89*******************9999977666666654455566554 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.2   0.0      0.01       3.5       3      22 ..      95     114 ..      94     172 .. 0.79
   2 !   14.2   0.0   0.00015      0.05       2      22 ..     503     523 ..     503     586 .. 0.82

  Alignments for each domain:
  == domain 1  score: 8.2 bits;  conditional E-value: 0.01
      AAA_18   3 ltGtpGvGKttlakeLskrl 22 
                 l G pGvGKt + + L++r 
  KOO21551.1  95 LIGEPGVGKTAVVEGLAQRI 114
                 8899************9984 PP

  == domain 2  score: 14.2 bits;  conditional E-value: 0.00015
      AAA_18   2 lltGtpGvGKttlakeLskrl 22 
                 ll G+ GvGKt+l+k+L+  l
  KOO21551.1 503 LLVGPTGVGKTQLCKALAGQL 523
                 589**************8775 PP

>> Roc  Ras of Complex, Roc, domain of DAPkinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.4   0.0    0.0071       2.4       3      27 ..      94     118 ..      93     138 .. 0.84
   2 !   13.1   0.0   0.00025     0.085       3      35 ..     503     534 ..     502     546 .. 0.80

  Alignments for each domain:
  == domain 1  score: 8.4 bits;  conditional E-value: 0.0071
                 EEESSTTSSHHHHHHCHCT-CCC-E CS
         Roc   3 vlvGdsgvGKtsllkrfvedkfsek 27 
                 vl+G+ gvGKt  ++ + ++ ++++
  KOO21551.1  94 VLIGEPGVGKTAVVEGLAQRIVDKD 118
                 79**********9999888777655 PP

  == domain 2  score: 13.1 bits;  conditional E-value: 0.00025
                 EEESSTTSSHHHHHHCHCT-CCC-EEETTTTEE CS
         Roc   3 vlvGdsgvGKtsllkrfvedkfsekekstigvd 35 
                 +lvG +gvGKt l+k +  + f+++e  t  +d
  KOO21551.1 503 LLVGPTGVGKTQLCKALAGQLFDSEEAVT-RID 534
                 79****************99998876554.444 PP

>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.9   0.0      0.42   1.4e+02      15      33 ..      94     112 ..      87     118 .. 0.84
   2 ?   -0.7   0.2       5.4   1.8e+03      48      80 ..     337     373 ..     293     408 .. 0.58
   3 !   16.6   0.0   2.5e-05    0.0084      15      51 ..     503     540 ..     498     636 .. 0.75

  Alignments for each domain:
  == domain 1  score: 2.9 bits;  conditional E-value: 0.42
                 EEEESTTSSHHHHHHHHTT CS
                 xxxxxxxxxxxxxxxxxxx RF
    ABC_tran  15 aivGenGaGKStLlkllag 33 
                 +++Ge G GK+ +++ la+
  KOO21551.1  94 VLIGEPGVGKTAVVEGLAQ 112
                 79*********99988776 PP

  == domain 2  score: -0.7 bits;  conditional E-value: 5.4
                 EGGGB-HHHCCHCEEEE-SS--S-TTSBHHHH....H CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx....x RF
    ABC_tran  48 dlkeqeleslrkeigvlpqepqlfpeltvren....e 80 
                 dl+ ++ +  +++ ++ ++   l +++t+r++     
  KOO21551.1 337 DLHAKQAKAESANAQWTTERRALEQRKTARQRleqaR 373
                 2333444444444444444444444444444432220 PP

  == domain 3  score: 16.6 bits;  conditional E-value: 2.5e-05
                 EEEESTTSSHHHHHHHHTTSS--SEEEE.EETTCEGGG CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxx RF
    ABC_tran  15 aivGenGaGKStLlkllagllkpteGei.lldgkdlke 51 
                  +vG++G GK+ L+k+lag+l + e+ + ++d+ + +e
  KOO21551.1 503 LLVGPTGVGKTQLCKALAGQLFDSEEAVtRIDMSEYSE 540
                 69*******************99998882233333333 PP

>> TsaE  Threonylcarbamoyl adenosine biosynthesis protein TsaE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.7   0.0     0.005       1.7       5      43 ..      76     114 ..      73     122 .. 0.79
   2 !   10.8   0.0    0.0011      0.38      21      43 ..     501     523 ..     456     535 .. 0.77

  Alignments for each domain:
  == domain 1  score: 8.7 bits;  conditional E-value: 0.005
                 HHHHHHHHHHHHCHTEEEEEEESTTSSHHHHHHHHHHHT CS
        TsaE   5 eetealgkklakalgdvilLeGdLGaGKTtlvrglakal 43 
                 ee+++  + la+  ++  +L G+ G+GKT+ v gla+ +
  KOO21551.1  76 EEIRRTIQVLARRRKNNPVLIGEPGVGKTAVVEGLAQRI 114
                 5666666777776677899*****************987 PP

  == domain 2  score: 10.8 bits;  conditional E-value: 0.0011
                 EEEEEESTTSSHHHHHHHHHHHT CS
        TsaE  21 vilLeGdLGaGKTtlvrglakal 43 
                 v+lL G+ G+GKT+l+++la +l
  KOO21551.1 501 VFLLVGPTGVGKTQLCKALAGQL 523
                 499****************9877 PP

>> RuvB_N  Holliday junction DNA helicase RuvB P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.8   0.2     0.015         5      28      57 ..      88     114 ..      64     180 .. 0.50
   2 !   10.2   0.0    0.0014      0.46       9      57 ..     471     523 ..     463     533 .. 0.69

  Alignments for each domain:
  == domain 1  score: 6.8 bits;  conditional E-value: 0.015
      RuvB_N  28 kreealdhvllyGpPGlGkttlakiiakel 57 
                 +r++     +l+G PG+Gkt++ + +a+ +
  KOO21551.1  88 RRKN---NPVLIGEPGVGKTAVVEGLAQRI 114
                 3332...23678999999999866554433 PP

  == domain 2  score: 10.2 bits;  conditional E-value: 0.0014
      RuvB_N   9 yigqek....vkeklkifieaakkreealdhvllyGpPGlGkttlakiiakel 57 
                  +gq++    + + +++  +  ++ +++l   ll+Gp G+Gkt l+k +a +l
  KOO21551.1 471 VVGQDHalrvIADAVRVSRAGLQNPDRPLGVFLLVGPTGVGKTQLCKALAGQL 523
                 56666511113344444445556667788889**************9999765 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.7   0.0    0.0093       3.2      91     122 ..      82     113 ..      46     129 .. 0.73
   2 !   11.5   0.0   0.00062      0.21     101     123 ..     501     523 ..     439     546 .. 0.78

  Alignments for each domain:
  == domain 1  score: 7.7 bits;  conditional E-value: 0.0093
                  HHHHHHCTTSEEEEECSTTSSHHHHHHHHCTT CS
  RsgA_GTPase  91 eelkellkdktsvlvGqSGvGKStLinallpe 122
                   ++ ++ +++  vl+G+ GvGK+++++ l+++
   KOO21551.1  82 IQVLARRRKNNPVLIGEPGVGKTAVVEGLAQR 113
                  3444445567789*************999876 PP

  == domain 2  score: 11.5 bits;  conditional E-value: 0.00062
                  EEEEECSTTSSHHHHHHHHCTT- CS
  RsgA_GTPase 101 tsvlvGqSGvGKStLinallpel 123
                  + +lvG++GvGK+ L +al+++l
   KOO21551.1 501 VFLLVGPTGVGKTQLCKALAGQL 523
                  6789****************984 PP

>> AAA_19  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.9   0.0    0.0013      0.43       9      38 ..      89     118 ..      81     220 .. 0.85
   2 ?    5.2   0.0     0.073        25      11      38 ..     500     527 ..     492     547 .. 0.81
   3 ?    1.1   0.0       1.4   4.6e+02     102     129 ..     570     598 ..     555     601 .. 0.75

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.0013
      AAA_19   9 kekvllvtaGpGtGKTrvlkhivallvelg 38 
                 ++++ ++++ pG GKT v+++  + +v+  
  KOO21551.1  89 RKNNPVLIGEPGVGKTAVVEGLAQRIVDKD 118
                 5667789**************999988766 PP

  == domain 2  score: 5.2 bits;  conditional E-value: 0.073
      AAA_19  11 kvllvtaGpGtGKTrvlkhivallvelg 38 
                 +v+l++++ G GKT++ k+    l + +
  KOO21551.1 500 GVFLLVGPTGVGKTQLCKALAGQLFDSE 527
                 6899***********9998887776665 PP

  == domain 3  score: 1.1 bits;  conditional E-value: 1.4
      AAA_19 102 eee.llivDEfqdvdelqyrLlkallgek 129
                 + + +++ DEf    +   +Ll +l++e+
  KOO21551.1 570 KPYsVVLLDEFEKAHKEVATLLLQLMDEG 598
                 344599*********88888888887554 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.4   0.0     0.014       4.7       4      22 ..      95     113 ..      94     171 .. 0.82
   2 !   12.9   0.0   0.00027     0.092       1      38 [.     501     543 ..     501     593 .. 0.84

  Alignments for each domain:
  == domain 1  score: 7.4 bits;  conditional E-value: 0.014
      AAA_33   4 lvGlpGsGKstlaerllkk 22 
                 l+G pG+GK+ ++e+l+++
  KOO21551.1  95 LIGEPGVGKTAVVEGLAQR 113
                 89**************976 PP

  == domain 2  score: 12.9 bits;  conditional E-value: 0.00027
      AAA_33   1 lvllvGlpGsGKstlaerllkklg.....avllssdtlrrrlf 38 
                 ++llvG+ G+GK++l + l+ +l      +++++  ++++r+ 
  KOO21551.1 501 VFLLVGPTGVGKTQLCKALAGQLFdseeaVTRIDMSEYSERHS 543
                 689****************999987777677777777666655 PP

>> AAA_3  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.0   0.0     0.062        21       4      23 ..      95     114 ..      93     133 .. 0.88
   2 !   11.1   0.1   0.00078      0.26       4     111 ..     504     620 ..     501     627 .. 0.58

  Alignments for each domain:
  == domain 1  score: 5.0 bits;  conditional E-value: 0.062
       AAA_3   4 legvPGlaktllvkalakal 23 
                 l g PG++kt +v+ la+ +
  KOO21551.1  95 LIGEPGVGKTAVVEGLAQRI 114
                 6789*************976 PP

  == domain 2  score: 11.1 bits;  conditional E-value: 0.00078
       AAA_3   4 legvPGlaktllvkalakal...dlefkriqftp...dllPsdilGt...evfeekekefefkkGpvfanllladeinrappktqsalleameerqvtv 93 
                 l g  G++kt+l kala +l   +  ++ri +         s ++G+    v  e+  +++        +++l de ++a   + + ll+ m+e q+t 
  KOO21551.1 504 LVGPTGVGKTQLCKALAGQLfdsEEAVTRIDMSEyseRHSVSRLVGAppgYVGYEEGGQLTEAVRRKPYSVVLLDEFEKAHKEVATLLLQLMDEGQLTD 602
                 556666777777777665543223345666554311123344555542211222222333332223335799*************************97 PP

       AAA_3  94 egethklpepflvlatqn 111
                 ++ ++   +  +v+ t n
  KOO21551.1 603 SQGKRVDFRSTIVMMTSN 620
                 654443334455666655 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.4   0.0    0.0014      0.47       4      31 ..      94     121 ..      93     135 .. 0.87
   2 ?    6.2   0.0     0.026       8.8       3      24 ..     502     523 ..     500     541 .. 0.87

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.0014
                 EEEC-TTTCHHHHHHHHHHHHCTS-SCC CS
       NACHT   4 ilqGeaGsGKTtLlqklalawaegklpq 31 
                 +l Ge+G+GKT+ +++la+ + +++ p+
  KOO21551.1  94 VLIGEPGVGKTAVVEGLAQRIVDKDVPE 121
                 689***************9998887765 PP

  == domain 2  score: 6.2 bits;  conditional E-value: 0.026
                 EEEEC-TTTCHHHHHHHHHHHH CS
       NACHT   3 vilqGeaGsGKTtLlqklalaw 24 
                  +l G+ G+GKT L + la ++
  KOO21551.1 502 FLLVGPTGVGKTQLCKALAGQL 523
                 6899***********9998766 PP

>> AAA_24  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.8   0.0    0.0073       2.5       3      44 ..      91     132 ..      89     176 .. 0.65
   2 !    9.2   0.0    0.0028      0.94       5      77 ..     502     583 ..     501     598 .. 0.69

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 0.0073
      AAA_24   3 lkiliyGpsgiGKTtlakelgpkplfidtekGlksldadkfp 44 
                 ++ +++G++g+GKT ++  l ++++  d+ ++l++ ++  ++
  KOO21551.1  91 NNPVLIGEPGVGKTAVVEGLAQRIVDKDVPESLRDCQVVSLD 132
                 56699***********99997777766666676666666655 PP

  == domain 2  score: 9.2 bits;  conditional E-value: 0.0028
      AAA_24   5 iliyGpsgiGKTtlakelgpkplfidtekGlksldadkfpdieswedfldevvel...........aaeladyktlviDtidel 77 
                 +l++Gp g+GKT l+k l     ++d e+ + ++d  ++ + +s+  ++ +               a   ++y+++ +D  +++
  KOO21551.1 502 FLLVGPTGVGKTQLCKAL--AGQLFDSEEAVTRIDMSEYSERHSVSRLVGAPPGYvgyeeggqlteAVRRKPYSVVLLDEFEKA 583
                 689***************..4445688888889998888766555554443333355556666665555666666666666655 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.8   0.0   0.00038      0.13      37     108 ..      94     168 ..      69     187 .. 0.82
   2 ?   -1.3   1.2         4   1.4e+03      80     142 ..     360     408 ..     343     411 .. 0.57
   3 ?    5.5   0.0     0.034        12      34      54 ..     500     520 ..     495     534 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 0.00038
      AAA_25  37 llaGapgtGKttlaldlalava.tGkpwlg.....pvapeqgkVlyvsaEdsedelrrRlravgealrddarllvldl 108
                 +l+G pg+GKt+++  la  ++ ++  +++     +v++  +  l+  a  +  e+++Rl+av+++++d  + ++l +
  KOO21551.1  94 VLIGEPGVGKTAVVEGLAQRIVdKD--VPEslrdcQVVSLDVGALIAGAKYRG-EFEERLKAVLRDVSDSNGQTILFI 168
                 799*******************544..45556878777788888888888888.*************88888777765 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 4
      AAA_25  80 EdsedelrrRlravgealrddarllvldlagveslpLfakdrggtlltadvdaleaaieeveg 142
                 E++  + r+Rl++++++l      ++  ++g    +     + g+ll a+v +le+++e+ eg
  KOO21551.1 360 EQRK-TARQRLEQARKDL------AAAERDG----NF---AKAGELLHAVVPRLERELEQWEG 408
                 2233.4444444444444......3333333....22...24566778888888888888766 PP

  == domain 3  score: 5.5 bits;  conditional E-value: 0.034
      AAA_25  34 elallaGapgtGKttlaldla 54 
                 ++ ll+G++g+GKt l+  la
  KOO21551.1 500 GVFLLVGPTGVGKTQLCKALA 520
                 5789**********9998887 PP

>> AAA_28  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.0   0.0    0.0011      0.37       3      79 ..      94     169 ..      92     181 .. 0.73
   2 !    8.1   0.0    0.0085       2.9       3      22 ..     503     522 ..     501     579 .. 0.81

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.0011
      AAA_28   3 vitGgestGKTtlleaLaar.gypvvpEaareileeklakgedalpwvedllafaervleeqleeeaaaaankvlfcD 79 
                 v++G ++ GKT ++e La+r   + vpE+ r+     l+ g  ++ + + + +f+er l++ l++  + +++ +lf+D
  KOO21551.1  94 VLIGEPGVGKTAVVEGLAQRiVDKDVPESLRDCQVVSLDVGALIAGA-KYRGEFEER-LKAVLRDVSDSNGQTILFID 169
                 89******************655689999998766666665554444.345556554.66666666666666666666 PP

  == domain 2  score: 8.1 bits;  conditional E-value: 0.0085
      AAA_28   3 vitGgestGKTtlleaLaar 22 
                  ++G+ + GKT l++aLa +
  KOO21551.1 503 LLVGPTGVGKTQLCKALAGQ 522
                 689**************955 PP

>> NTPase_1  NTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.0   0.0    0.0074       2.5       4      28 ..      95     119 ..      92     122 .. 0.89
   2 ?    7.0   0.0     0.014       4.9       2      29 ..     502     529 ..     501     545 .. 0.81

  Alignments for each domain:
  == domain 1  score: 8.0 bits;  conditional E-value: 0.0074
                 EE--TTSSHHHHHHHHHHHH...GG CS
    NTPase_1   4 iTGppGvGKtTlvkkvlellkssgv 28 
                 + G+pGvGKt +v+ +++ + +++v
  KOO21551.1  95 LIGEPGVGKTAVVEGLAQRIVDKDV 119
                 67****************9999887 PP

  == domain 2  score: 7.0 bits;  conditional E-value: 0.014
                 EEEE--TTSSHHHHHHHHHHHH...GGG CS
    NTPase_1   2 vfiTGppGvGKtTlvkkvlellkssgvk 29 
                 +++ Gp GvGKt l+k ++ +l +s+  
  KOO21551.1 502 FLLVGPTGVGKTQLCKALAGQLFDSEEA 529
                 5789*************99998776655 PP

>> SRP54  SRP54-type protein, GTPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.8   0.0      0.11        39       5      28 ..      94     117 ..      90     133 .. 0.83
   2 !   10.9   0.0   0.00077      0.26       3      29 ..     501     527 ..     499     535 .. 0.85

  Alignments for each domain:
  == domain 1  score: 3.8 bits;  conditional E-value: 0.11
                 EEEESTTSSHHHHHHHHHHHHHHT CS
       SRP54   5 llvGlqGaGKTttlaKLaallkke 28 
                 +l+G  G+GKT  +  La+++ ++
  KOO21551.1  94 VLIGEPGVGKTAVVEGLAQRIVDK 117
                 799***************998876 PP

  == domain 2  score: 10.9 bits;  conditional E-value: 0.00077
                 EEEEEESTTSSHHHHHHHHHHHHHHTT CS
       SRP54   3 villvGlqGaGKTttlaKLaallkkeg 29 
                 v+llvG++G+GKT+ +  La +l +++
  KOO21551.1 501 VFLLVGPTGVGKTQLCKALAGQLFDSE 527
                 79*****************98876655 PP

>> Zeta_toxin  Zeta toxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.3   0.0     0.063        21      10      40 ..      84     114 ..      75     120 .. 0.75
   2 !   10.2   0.0   0.00099      0.34      14      58 ..     496     542 ..     484     554 .. 0.83

  Alignments for each domain:
  == domain 1  score: 4.3 bits;  conditional E-value: 0.063
  Zeta_toxin  10 ypsqerPklillgGqpGAGKselaellkdel 40 
                 + +++r+   +l G pG GK+++ e l++++
  KOO21551.1  84 VLARRRKNNPVLIGEPGVGKTAVVEGLAQRI 114
                 5566667777788***********9998876 PP

  == domain 2  score: 10.2 bits;  conditional E-value: 0.00099
  Zeta_toxin  14 erPk.lillgGqpGAGKselaellkdele.rqgnvvrldpDdlRelh 58 
                 +rP  + ll+G +G GK++l ++l+ +l  +++ v r+d  ++ e+h
  KOO21551.1 496 DRPLgVFLLVGPTGVGKTQLCKALAGQLFdSEEAVTRIDMSEYSERH 542
                 666524578*******************977888889*999999988 PP

>> DUF815  Protein of unknown function (DUF815)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.5   0.0    0.0007      0.24      41      86 ..      78     127 ..      61     174 .. 0.66
   2 ?    5.3   0.0     0.027       9.2      56      88 ..     502     534 ..     490     552 .. 0.81

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.0007
      DUF815  41 venteqfleglpannvLLwGarGtGKSslvkallneyaeeg.......Lrlie 86 
                 ++ t q l+ ++ nn +L+G+ G+GK ++v  l +++ ++            +
  KOO21551.1  78 IRRTIQVLARRRKNNPVLIGEPGVGKTAVVEGLAQRIVDKDvpeslrdC---Q 127
                 56688889999999*********************99998777774441...3 PP

  == domain 2  score: 5.3 bits;  conditional E-value: 0.027
      DUF815  56 vLLwGarGtGKSslvkallneyaeegLrlieve 88 
                  LL+G  G+GK  l+kal  ++ +++ ++  ++
  KOO21551.1 502 FLLVGPTGVGKTQLCKALAGQLFDSEEAVTRID 534
                 59****************999877765555554 PP

>> MCM  MCM P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.4   0.0     0.099        34      54      78 ..      87     111 ..      70     134 .. 0.81
   2 !    9.5   0.1    0.0014      0.46      60     151 ..     502     601 ..     454     682 .. 0.77

  Alignments for each domain:
  == domain 1  score: 3.4 bits;  conditional E-value: 0.099
                 BCSS-EEEEEESSTSTHHHHHHHHH CS
         MCM  54 lrgdinvllvgdpgtaKsqlLkyve 78 
                  r + n +l+g+pg++K+++++ ++
  KOO21551.1  87 RRRKNNPVLIGEPGVGKTAVVEGLA 111
                 57778889**********9987665 PP

  == domain 2  score: 9.5 bits;  conditional E-value: 0.0014
                 EEEEESSTSTHHHHHHHHHHHSSSEEEEESSSSSSSHSSSEEEEESSSSS........EEEEETHHHHTTT....SEEEEESGGGSTCHHHHHHHHHHH CS
         MCM  60 vllvgdpgtaKsqlLkyveklapravytsgkgssaagLtaavvrdeetge........fvleaGalvladk....GvcciDefdkmkeedrsalhEamE 146
                  llvg  g++K+ql k+++     + + s ++ +  ++  +  r++ ++          + e+G l  a +     v+++Def+k ++e  + l+  m+
  KOO21551.1 502 FLLVGPTGVGKTQLCKALA----GQLFDSEEAVTRIDMSEYSERHSVSRLvgappgyvGYEEGGQLTEAVRrkpySVVLLDEFEKAHKEVATLLLQLMD 596
                 5899999999999999886....45555555555555555555555554423333332567899998875433338**********************9 PP

                 HSEEE CS
         MCM 147 qqtis 151
                 + +++
  KOO21551.1 597 EGQLT 601
                 98876 PP

>> ResIII  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.3   0.0      0.11        36      11      50 ..      77     116 ..      71     123 .. 0.85
   2 ?   -0.3   0.0       2.7   9.2e+02     128     146 ..     158     176 ..     141     191 .. 0.78
   3 !    7.7   0.0    0.0098       3.3      26      52 ..     501     527 ..     468     533 .. 0.71

  Alignments for each domain:
  == domain 1  score: 4.3 bits;  conditional E-value: 0.11
                 HHHHHT......TTSEEEEEESTTSTHHHHHHHHHHHH-S CS
      ResIII  11 aienlleklkskrdkrglikmaTGtGKTlvaaklierllk 50 
                  i+++++ l  +r+++ ++  + G+GKT v   l++r+  
  KOO21551.1  77 EIRRTIQVLARRRKNNPVLIGEPGVGKTAVVEGLAQRIVD 116
                 688999999978888999************9888888765 PP

  == domain 2  score: -0.3 bits;  conditional E-value: 2.7
                 HHTTT-SEEEEETGGGTTS CS
      ResIII 128 llrdrfdviiiDEaHrlga 146
                  +++ + +++iDE H + +
  KOO21551.1 158 SDSNGQTILFIDELHTVVG 176
                 56677779*******8766 PP

  == domain 3  score: 7.7 bits;  conditional E-value: 0.0098
                 EEEEEESTTSTHHHHHHHHHHHH-S.. CS
      ResIII  26 rglikmaTGtGKTlvaaklierllkkg 52 
                  +l++ +TG+GKT ++ +l+ +l+ ++
  KOO21551.1 501 VFLLVGPTGVGKTQLCKALAGQLFDSE 527
                 56899***********99999999875 PP

>> Torsin  Torsin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.0         7   2.4e+03      59      82 ..      96     119 ..      87     166 .. 0.71
   2 !   13.9   0.0   0.00013     0.044      15      80 ..     459     526 ..     451     537 .. 0.86

  Alignments for each domain:
  == domain 1  score: -1.4 bits;  conditional E-value: 7
                 EE-TTSSHHHHHHHHHHHHSTTGG CS
      Torsin  59 hGwtGtGknfvaeiiaenlyrdGl 82 
                  G +G Gk  v e +a+ +  + +
  KOO21551.1  96 IGEPGVGKTAVVEGLAQRIVDKDV 119
                 589999999999999988766554 PP

  == domain 2  score: 13.9 bits;  conditional E-value: 0.00013
                 -HHHHHHHHHHH--S-HHHHHHHHHHHHHH.HT-SS-SS-E.EEEEEE-TTSSHHHHHHHHHHHHSTT CS
      Torsin  15 nleeLekdlekklfGqhlvkklvvksvkay.lenekpkkpL.vlsfhGwtGtGknfvaeiiaenlyrd 80 
                 +l +Le+ l+++++Gq  + +++  +v+      ++p++pL v+ + G tG Gk  +++ +a +l+ +
  KOO21551.1 459 KLLQLEAKLAQTVVGQDHALRVIADAVRVSrAGLQNPDRPLgVFLLVGPTGVGKTQLCKALAGQLFDS 526
                 56799**********************965155679*****556789****************99975 PP

>> PduV-EutP  Ethanolamine utilisation - propanediol utilisation
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.8   0.0       1.1   3.8e+02       5      23 ..      94     112 ..      91     123 .. 0.82
   2 !   11.6   0.0   0.00051      0.17       5      25 ..     503     523 ..     500     538 .. 0.88

  Alignments for each domain:
  == domain 1  score: 0.8 bits;  conditional E-value: 1.1
   PduV-EutP   5 lliGkvgsGKttLtqalkg 23 
                 +liG+ g+GKt++ + l +
  KOO21551.1  94 VLIGEPGVGKTAVVEGLAQ 112
                 69*********98777665 PP

  == domain 2  score: 11.6 bits;  conditional E-value: 0.00051
   PduV-EutP   5 lliGkvgsGKttLtqalkgee 25 
                 ll+G++g+GKt L++al g+ 
  KOO21551.1 503 LLVGPTGVGKTQLCKALAGQL 523
                 89***************9975 PP

>> ATP_bind_1  Conserved hypothetical ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.3   0.0     0.021       7.1       2      36 ..      96     135 ..      95     148 .. 0.78
   2 ?    6.4   0.0      0.02       6.6       2      21 ..     505     524 ..     504     535 .. 0.80

  Alignments for each domain:
  == domain 1  score: 6.3 bits;  conditional E-value: 0.021
  ATP_bind_1   2 vGpaGsGKttfvgalseil.....elrgrsvavvNLDPAa 36 
                 +G +G+GKt  v+ l++ +     +++ r+++vv LD +a
  KOO21551.1  96 IGEPGVGKTAVVEGLAQRIvdkdvPESLRDCQVVSLDVGA 135
                 8**************9986222224455889999999776 PP

  == domain 2  score: 6.4 bits;  conditional E-value: 0.02
  ATP_bind_1   2 vGpaGsGKttfvgalseile 21 
                 vGp G+GKt +++al+  l 
  KOO21551.1 505 VGPTGVGKTQLCKALAGQLF 524
                 8*************986555 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.9   0.0      0.16        56       3      22 ..      94     113 ..      92     137 .. 0.85
   2 ?    8.6   0.0    0.0058         2       3      24 ..     503     524 ..     501     609 .. 0.83

  Alignments for each domain:
  == domain 1  score: 3.9 bits;  conditional E-value: 0.16
                 EEEESTTSSHHHHHHHHHTS CS
    MMR_HSR1   3 aivGrpNvGKStLinaltge 22 
                 +++G p vGK+ ++  l ++
  KOO21551.1  94 VLIGEPGVGKTAVVEGLAQR 113
                 68**********99998875 PP

  == domain 2  score: 8.6 bits;  conditional E-value: 0.0058
                 EEEESTTSSHHHHHHHHHTSTE CS
    MMR_HSR1   3 aivGrpNvGKStLinaltgeka 24 
                 ++vG + vGK+ L +al g+  
  KOO21551.1 503 LLVGPTGVGKTQLCKALAGQLF 524
                 69****************9733 PP

>> Bac_DnaA  Bacterial dnaA  protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.8   0.0     0.065        22      32      61 ..      89     117 ..      72     132 .. 0.81
   2 ?    7.7   0.0    0.0085       2.9      22      63 ..     487     528 ..     468     542 .. 0.79

  Alignments for each domain:
  == domain 1  score: 4.8 bits;  conditional E-value: 0.065
                 T.S--EEEE-SSSSSHHHHHHHHHHHHHHH CS
    Bac_DnaA  32 kkynPlfiygevGlGktHLlkaignevlen 61 
                 +k nP++i ge G+Gkt +++ ++++++++
  KOO21551.1  89 RKNNPVLI-GEPGVGKTAVVEGLAQRIVDK 117
                 47799987.9***********999998865 PP

  == domain 2  score: 7.7 bits;  conditional E-value: 0.0085
                 HHHHHHHSTTT.S--EEEE-SSSSSHHHHHHHHHHHHHHHSS CS
    Bac_DnaA  22 aalkvaeapgkkynPlfiygevGlGktHLlkaignevlenap 63 
                 ++++  ++p++    +++ g++G+Gkt L ka++ ++ ++++
  KOO21551.1 487 VSRAGLQNPDRPLGVFLLVGPTGVGKTQLCKALAGQLFDSEE 528
                 444445678888888999***************988876655 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.5   0.0     0.085        29      20      41 ..      88     109 ..      80     115 .. 0.78
   2 ?    7.3   0.0     0.011       3.7      23      42 ..     500     519 ..     492     528 .. 0.84

  Alignments for each domain:
  == domain 1  score: 4.5 bits;  conditional E-value: 0.085
      AAA_29  20 dlkgatlltGpsGsGKSTllDA 41 
                 ++k++ +l+G+ G+GK++++  
  KOO21551.1  88 RRKNNPVLIGEPGVGKTAVVEG 109
                 4455889**********99865 PP

  == domain 2  score: 7.3 bits;  conditional E-value: 0.011
      AAA_29  23 gatlltGpsGsGKSTllDAi 42 
                 g++ll+Gp+G+GK+ l  A+
  KOO21551.1 500 GVFLLVGPTGVGKTQLCKAL 519
                 689**********9987666 PP

>> T2SSE  Type II/IV secretion system protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.0       2.6   8.9e+02     105     156 ..      59     117 ..      52     155 .. 0.74
   2 ?   11.9   0.0   0.00026     0.086     128     174 ..     498     543 ..     458     579 .. 0.79

  Alignments for each domain:
  == domain 1  score: -1.3 bits;  conditional E-value: 2.6
       T2SSE 105 lddlgaeealk......ekiaevlrkavrer.glilvsGgTgsGKttllyallkeinks 156
                 l +l+ +++l+      e+i+++++   r+r  + ++ G  g GKt ++  l + i ++
  KOO21551.1  59 LTELARAGKLDpvigrdEEIRRTIQVLARRRkNNPVLIGEPGVGKTAVVEGLAQRIVDK 117
                 55555555555555555777777776655541567888999999999988777776655 PP

  == domain 2  score: 11.9 bits;  conditional E-value: 0.00026
       T2SSE 128 erglilvsGgTgsGKttllyallkeinksderivtvEDpvEiqlega 174
                   g++l+ G+Tg GKt l  al  ++ +s e+ vt  D  E+  ++ 
  KOO21551.1 498 PLGVFLLVGPTGVGKTQLCKALAGQLFDS-EEAVTRIDMSEYSERHS 543
                 56899*********************999.66666669999987775 PP

>> Ras  Ras family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.2   0.0     0.085        29       3      18 ..      94     109 ..      92     128 .. 0.84
   2 ?    7.0   0.0     0.012         4       3      35 ..     503     534 ..     501     547 .. 0.80

  Alignments for each domain:
  == domain 1  score: 4.2 bits;  conditional E-value: 0.085
                 EEEESTTSSHHHHHHH CS
         Ras   3 vlvGdsavGKtslllr 18 
                 vl+G+ +vGKt+++  
  KOO21551.1  94 VLIGEPGVGKTAVVEG 109
                 89**********9865 PP

  == domain 2  score: 7.0 bits;  conditional E-value: 0.012
                 EEEESTTSSHHHHHHHHHHSSCSSSCTTTSSEE CS
         Ras   3 vlvGdsavGKtslllrfvkdkFkeeyesTigvd 35 
                 +lvG ++vGKt l    + + F++e   T  +d
  KOO21551.1 503 LLVGPTGVGKTQLCKALAGQLFDSEEAVTR-ID 534
                 79********************99988884.44 PP

>> Borrelia_P83  Borrelia P83/100 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   6.4    0.0004      0.13     190     261 ..     299     376 ..     274     406 .. 0.81

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.0004
  Borrelia_P83 190 kekdvelrrdivDl........keresqedakraqvlkeeldkkqkdadkakkkadtaednadkqrkevreklqeaknlp 261
                   +e   ++ r+++Dl        ke+ s  +++r++ l+ +l  kq +a+ a+ +  t + +++ qrk++r++l++a++  
    KOO21551.1 299 PEPIADMERQVLDLqielasleKEIGSAAATRRRE-LQADLHAKQAKAESANAQWTTERRALE-QRKTARQRLEQARKDL 376
                   34446888999999********************9.999999999999999999888777776.8999999998877654 PP

>> Rad17  Rad17 P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.2   0.0       0.1        35      38      70 ..      83     115 ..      75     128 .. 0.85
   2 ?    5.7   0.0     0.037        12      43      69 ..     497     523 ..     482     540 .. 0.84

  Alignments for each domain:
  == domain 1  score: 4.2 bits;  conditional E-value: 0.1
       Rad17  38 dvLesrkkriLLisGPsGCgkstvvkvLskelg 70 
                 +vL +r+k+  ++ G +G gk+ vv+ L++  +
  KOO21551.1  83 QVLARRRKNNPVLIGEPGVGKTAVVEGLAQRIV 115
                 78999999988889*************998766 PP

  == domain 2  score: 5.7 bits;  conditional E-value: 0.037
       Rad17  43 rkkriLLisGPsGCgkstvvkvLskel 69 
                 r+  + L+ GP+G gk+   k L+ +l
  KOO21551.1 497 RPLGVFLLVGPTGVGKTQLCKALAGQL 523
                 444599***************999765 PP

>> DAHP_snth_FXD  DAHP synthase ferredoxin-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.1    0.0013      0.44      12      53 ..     678     719 ..     673     724 .. 0.85

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.0013
  DAHP_snth_FXD  12 eqieevierieelGlkvhvskGeertViGviGdtskldkeql 53 
                     ++++v  r+ e Gl+ hvs+G+ +   ++ G ++  ++e+l
     KOO21551.1 678 LEVDKVAGRLDERGLELHVSEGAVHWLAAAGGSKRGGSTEEL 719
                    589********************9999988888887777766 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.2   0.0       2.1     7e+02       3      20 ..      94     111 ..      94     125 .. 0.82
   2 ?    6.4   0.0     0.021       6.9       2      23 ..     502     523 ..     501     554 .. 0.79
   3 ?    0.1   0.0       1.7   5.6e+02     255     286 ..     569     599 ..     563     607 .. 0.73

  Alignments for each domain:
  == domain 1  score: -0.2 bits;  conditional E-value: 2.1
      AAA_21   3 vliGpNgsGKSnLLdald 20 
                 vliG  g+GK+ + + l 
  KOO21551.1  94 VLIGEPGVGKTAVVEGLA 111
                 89***********99993 PP

  == domain 2  score: 6.4 bits;  conditional E-value: 0.021
      AAA_21   2 nvliGpNgsGKSnLLdaldlla 23 
                  +l+Gp g+GK+ L +al +  
  KOO21551.1 502 FLLVGPTGVGKTQLCKALAGQL 523
                 68****************7654 PP

  == domain 3  score: 0.1 bits;  conditional E-value: 1.7
      AAA_21 255 lkkgsllliDEpEngLHPkllrrllellkels 286
                 +k+ s++l+DE+E   H ++ + ll+l++e +
  KOO21551.1 569 RKPYSVVLLDEFEKA-HKEVATLLLQLMDEGQ 599
                 44559********87.7777777777776665 PP

>> CLP1_P  mRNA cleavage and polyadenylation factor CLP1 P-loop
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.0       3.6   1.2e+03       1      33 [.      97     134 ..      97     136 .. 0.72
   2 ?    9.3   0.0    0.0026      0.88       1      30 [.     506     535 ..     506     552 .. 0.87

  Alignments for each domain:
  == domain 1  score: -0.9 bits;  conditional E-value: 3.6
      CLP1_P   1 GpkdsGKSTlarlLlNyalrkgr.....kpvyvDlDvG 33 
                 G+  +GK++++  L+++++ k        + +v lDvG
  KOO21551.1  97 GEPGVGKTAVVEGLAQRIVDKDVpeslrDCQVVSLDVG 134
                 67789************998764333314447777776 PP

  == domain 2  score: 9.3 bits;  conditional E-value: 0.0026
      CLP1_P   1 GpkdsGKSTlarlLlNyalrkgrkpvyvDl 30 
                 Gp+ +GK+ l++ L+ +++ +++ ++ +D+
  KOO21551.1 506 GPTGVGKTQLCKALAGQLFDSEEAVTRIDM 535
                 99**********************999997 PP

>> DUF4407  Domain of unknown function (DUF4407)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.8   7.4    0.0027       0.9     130     208 ..     297     392 ..     274     445 .. 0.59

  Alignments for each domain:
  == domain 1  score: 8.8 bits;  conditional E-value: 0.0027
     DUF4407 130 altaelaeleaqiaalqaeidaaearldalraeaqkeldgtk..........gtgttgvaGkgpaakekkaqldaaqaelaelkakld.......a 208
                 +  + +a++e+q+ +lq e++++e+++  + a+ ++el+ +           +++ t  ++  +  k++++ l++a+++la+++++ +        
  KOO21551.1 297 SKPEPIADMERQVLDLQIELASLEKEIGSAAATRRRELQADLhakqakaesaNAQWTTERRALEQRKTARQRLEQARKDLAAAERDGNfakagelL 392
                 345667888888888888888888888888888888888766444333333322222233333333333333333333333333332244444443 PP

>> OEP  Outer membrane efflux protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.9  13.4     0.007       2.4      81     181 ..     287     388 ..     280     389 .. 0.93

  Alignments for each domain:
  == domain 1  score: 7.9 bits;  conditional E-value: 0.007
         OEP  81 rrarvkaakaqleaaeaqleqarqqlrlevaqaylqlllakeql.elaeealklaekalelaearykaGlislld.vlqaqvrllqaraelaeaeqqlq 177
                   +r+++++ ++    a+ e+++++l++e+a++  ++ +a +++ + +++ l + +  +e a a++   +  l +   +a++rl qar++la+ae++ +
  KOO21551.1 287 AASRLRMQQESKPEPIADMERQVLDLQIELASLEKEIGSAAATRrRELQADLHAKQAKAESANAQWTTERRAL-EqRKTARQRLEQARKDLAAAERDGN 384
                 66899999999999999**********************999999****************************.77********************999 PP

         OEP 178 lara 181
                  a+a
  KOO21551.1 385 FAKA 388
                 9887 PP

>> OmpH  Outer membrane protein (OmpH-like)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.5   7.5     0.015       4.9      21      89 ..     313     382 ..     300     404 .. 0.64

  Alignments for each domain:
  == domain 1  score: 7.5 bits;  conditional E-value: 0.015
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTS...-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
        OmpH  21 qeqlekkfkklqaeleakekelqklqeelqkkakkl.e.keekeqelqkkeqelqqkqqqkaqelqkkqqe 89 
                 q +l++ +k++  + +++++elq+   + q+ka+++ +  ++++++l++++++ q+ ++q++++l++++++
  KOO21551.1 313 QIELASLEKEIGSAAATRRRELQADLHAKQAKAESAnAqWTTERRALEQRKTARQR-LEQARKDLAAAERD 382
                 55555555555555555555555555555544444322234555568888888777.88888888877754 PP

>> UPF0242  Uncharacterised protein family (UPF0242) N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.3   6.5     0.014       4.6      94     182 ..     284     376 ..     257     379 .. 0.76

  Alignments for each domain:
  == domain 1  score: 7.3 bits;  conditional E-value: 0.014
     UPF0242  94 lqeeeeeLkeeldakeeelerlkeenqqLqekleaiae....dfeelkleleeqLaekqellqeyqetieeqrsvlekrqdqieqLeskVrDl 182
                 l e   +L+ ++++k e ++ ++++   Lq++l    +      +  ++el++ L+ kq + +  +++ +  r  le+r+   ++Le   +Dl
  KOO21551.1 284 LDEAASRLRMQQESKPEPIADMERQVLDLQIELASLEKeigsAAATRRRELQADLHAKQAKAESANAQWTTERRALEQRKTARQRLEQARKDL 376
                 4455566666677777777777777667777666666633325578899**************************************988887 PP

>> AAA_17  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.6   0.0      0.24        82       2      19 ..      97     114 ..      96     161 .. 0.84
   2 ?   -0.6   0.7       4.8   1.6e+03      11      96 ..     239     323 ..     238     375 .. 0.59
   3 ?    4.5   0.5      0.13        45       1      18 [.     505     522 ..     505     608 .. 0.89

  Alignments for each domain:
  == domain 1  score: 3.6 bits;  conditional E-value: 0.24
                 E-TTSSHHHHHHHHHHHH CS
      AAA_17   2 GgPGsGKgtqceklveky 19 
                 G PG+GK+ ++e l++++
  KOO21551.1  97 GEPGVGKTAVVEGLAQRI 114
                 88**********999865 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 4.8
                 HHHHHHHHH...TEEEEEHHHHHHHHHHTTTSHSSHHHHCTSHHHHHHHHHHHHHHHHHHHH.HSSEEEEEE-SEEEETTEEEESSHHHH CS
      AAA_17  11 qceklveky...gfthlsaGdllreeakrgglakardemrklpleekkelqkeaaekiaeea.kkkgvlvdghprikeqagfldglpkev 96 
                 +++ l+eky   +  h++ G ll +++      +     rklp +   +l++eaa +++ ++ +k + + d    + + + +l+ l+ke+
  KOO21551.1 239 ILRGLKEKYqahHGVHITDGALLAAVQMAHRYLT----ERKLPDK-VIDLLDEAASRLRMQQeSKPEPIADMERQVLDLQIELASLEKEI 323
                 5566777774434456788888887765443322....2345533.33445555555544431334455555555555555555555554 PP

  == domain 3  score: 4.5 bits;  conditional E-value: 0.13
                 EE-TTSSHHHHHHHHHHH CS
      AAA_17   1 lGgPGsGKgtqceklvek 18 
                 +G+ G+GK+ +c+ l+ +
  KOO21551.1 505 VGPTGVGKTQLCKALAGQ 522
                 799*********999865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (756 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1243  (0.069329); expected 358.6 (0.02)
Passed bias filter:                      700  (0.0390429); expected 358.6 (0.02)
Passed Vit filter:                       140  (0.00780858); expected 17.9 (0.001)
Passed Fwd filter:                        57  (0.00317921); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              53  [number of targets reported over threshold]
# CPU time: 0.96u 0.30s 00:00:01.26 Elapsed: 00:00:00.48
# Mc/sec: 4745.41
//
Query:       KOO21552.1  [L=318]
Description: hypothetical protein Ctob_000467 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (318 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       303  (0.0169); expected 358.6 (0.02)
Passed bias filter:                      240  (0.0133861); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.44u 0.24s 00:00:00.68 Elapsed: 00:00:00.41
# Mc/sec: 2327.54
//
Query:       KOO21553.1  [L=475]
Description: mitochondrial processing peptidase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.3e-31  108.7   0.0      6e-31  107.9   0.0    1.4  1  Peptidase_M16_C  Peptidase M16 inactive domain
    2.7e-27   95.6   0.2    4.6e-27   94.8   0.2    1.3  1  Peptidase_M16    Insulinase (Peptidase family M16)


Domain annotation for each model (and alignments):
>> Peptidase_M16_C  Peptidase M16 inactive domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  107.9   0.0   6.6e-35     6e-31       5     183 .]     216     395 ..     212     395 .. 0.96

  Alignments for each domain:
  == domain 1  score: 107.9 bits;  conditional E-value: 6.6e-35
                      HHHHHHHHHHSSGGGEEEEEEESS-HHHHHHHHHHHHTTSTHHSHCSGSCTSSSSSGGGSSEEEEEEEESSSSSEEEEEEEEEECTCTHTTHHH CS
  Peptidase_M16_C   5 edlkefykkfYrpenmvlaivGdvdheelvkliekyfgdlkaskappakptgepltpatlkkppvvlkkldeeqahlslafegpskendeddla 98 
                       +l +f+ + + pe+mvla++G  dh+elv+l++kyfg+l++    ++  + +p++   + +++v+l +++ + +h++++feg ++ +  d  +
       KOO21553.1 216 SVLGAFVSTQFVPEKMVLAAAG-YDHDELVSLAKKYFGGLPK----GGAAAAPPKD--SYVGGEVRLLQEE-PVTHFAIGFEGTGW-KGADLVP 300
                      57789*****************.******************7....7788888888..9999****99999.9*************.******* PP

                      HHHHHHHHHSS...........TTSHHHHHHHTTTTSESEEEEEEEEESSCEEEEEEEEEECTTHHHHHHHHHHHHHHHHHHTS-HHHHHHHHH CS
  Peptidase_M16_C  99 lavlntlLggg...........mesrLytnlrekeglaysvsafndsyrdsglfgisatadpenveevvevilkelrklkkeglteeelerakn 181
                      l vlntl+ggg           m+ rLy+n++++   ++ +s fn+ y+ +g+fg++  a   ++  +v ++l+el+k+k   ++ eel rak 
       KOO21553.1 301 LCVLNTLMGGGtsfsaggpgkgMYTRLYQNVLNRLPFVQAASVFNSFYNETGVFGVYGAAPASEMGSLVSALLDELKKMKGA-ISAEELARAKM 393
                      **********************************************9***********************************.*********** PP

                      HH CS
  Peptidase_M16_C 182 ql 183
                      ql
       KOO21553.1 394 QL 395
                      97 PP

>> Peptidase_M16  Insulinase (Peptidase family M16)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   94.8   0.2   5.2e-31   4.6e-27       7     146 ..      67     204 ..      61     206 .. 0.92

  Alignments for each domain:
  == domain 1  score: 94.8 bits;  conditional E-value: 5.2e-31
                    -TSSSEEEEEEEES-SGGGSCTTTTTHHHHHHHHTTSBBSSSCHHHHHHHHHHTTCEEEEEEESSEEEEEEEEEGGGHHHHHHHHHHHHHSBTTSH CS
  Peptidase_M16   7 dppaktsavglvvdaGSryepkdlnGlAHllehmafkgTkkypsnklaeeleklGgslnAttsrentvYyvevlskdlekaldvladvfkapllee 102
                      + ++ +vg++v++GS  +   ++G+AH l hmafk++   ++  +++ +e++G+++++tt ren+vY+v++l+ +++ a+++la+++  p+l  
     KOO21553.1  67 M-TGPATTVGVYVETGSKFDS--VPGTAHVLQHMAFKSSTSKSALMMVRDAEMMGAAVSCTTGRENMVYQVDTLTASVPAAVAMLAETTLRPKLLA 159
                    4.77889***********986..67*********************************************************************** PP

                    HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHTTT.SGGGSHSS CS
  Peptidase_M16 103 severerkvvekeveavdaepekvveenlhaaayre.kalgrsll 146
                    +e+++   +ve+e + ++a++ ++v+e +h aay    +lg++l+
     KOO21553.1 160 WELQEAGSTVEAEASSMKANHMALVQELMHPAAYGAaSPLGKPLM 204
                    *****999************************9974156777776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (475 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       436  (0.0243181); expected 358.6 (0.02)
Passed bias filter:                      360  (0.0200792); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.49u 0.24s 00:00:00.73 Elapsed: 00:00:00.39
# Mc/sec: 3643.51
//
Query:       KOO21554.1  [L=164]
Description: endonuclease iii-like protein 1-like protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.2e-12   48.2   0.0    1.6e-12   47.8   0.0    1.2  1  HhH-GPD   HhH-GPD superfamily base excision DNA repair protei
      2e-07   30.5   0.0    3.6e-07   29.7   0.0    1.4  1  HHH       Helix-hairpin-helix motif
  ------ inclusion threshold ------
      0.033   14.8   0.1       0.19   12.4   0.0    2.1  2  HHH_5     Helix-hairpin-helix domain


Domain annotation for each model (and alignments):
>> HhH-GPD  HhH-GPD superfamily base excision DNA repair protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.8   0.0   2.7e-16   1.6e-12      38     106 ..       3     104 ..       1     107 [. 0.92

  Alignments for each domain:
  == domain 1  score: 47.8 bits;  conditional E-value: 2.7e-16
                 HHHHHHHHTTSTTHHHHHHHHHHHHHHHH...............................S-SS.S--TTSHHHHHHHHHHTTSSSS..TTHHHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxx...............................xxxx.xxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxx RF
     HhH-GPD  38 eekLrelirelGfyrrKakyikelArilv...............................gkpd.vlivvDvhvrrilkrlrsikek..ktkkkvekkl 102
                 ++ L+e+ir++Gf+++K++ ike+ r l+                               ++ + v+i vD+hv+ri+++l+++ ++  kt++k++k +
  KOO21554.1   3 DDTLHEYIRQVGFHNNKVRFIKETTRLLLerhegevprtmdalldlpgvgpkmaiilmrvAFDEtVGISVDTHVHRICNQLGWAGAQgsKTPEKTRKVI 101
                 789*********************************************************4445499********************999999999999 PP

                 HHHH CS
                 xxxx RF
     HhH-GPD 103 eell 106
                  e++
  KOO21554.1 102 -EGW 104
                 .555 PP

>> HHH  Helix-hairpin-helix motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.7   0.0     6e-11   3.6e-07       1      24 [.      33      56 ..      33      61 .. 0.95

  Alignments for each domain:
  == domain 1  score: 29.7 bits;  conditional E-value: 6e-11
                SHHHHHTSSHHHHHTSTT-SHHHH CS
         HHH  1 sleglipasreeLlalPGVGpktA 24
                ++eg++p++++ Ll+lPGVGpk+A
  KOO21554.1 33 RHEGEVPRTMDALLDLPGVGPKMA 56
                79*********************9 PP

>> HHH_5  Helix-hairpin-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   3.2e-05      0.19       3      20 ..      44      61 ..      42      70 .. 0.84
   2 ?   -0.4   0.0       0.3   1.8e+03      12      23 ..     141     153 ..     140     157 .. 0.81

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 3.2e-05
                HHHTSTT--HHHHHHHHT CS
       HHH_5  3 eLlsvsGiGpktAlalls 20
                 Ll+++G+Gpk+A+ l +
  KOO21554.1 44 ALLDLPGVGPKMAIILMR 61
                69***********87765 PP

  == domain 2  score: -0.4 bits;  conditional E-value: 0.3
                 HHHHHHHHTT.T- CS
       HHH_5  12 pktAlallsa.Gi 23 
                 p+ Al+ll++ G+
  KOO21554.1 141 PSAALRLLDTlGV 153
                 899*****99555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (164 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       532  (0.0296726); expected 358.6 (0.02)
Passed bias filter:                      507  (0.0282782); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.38u 0.24s 00:00:00.62 Elapsed: 00:00:00.38
# Mc/sec: 1297.90
//
Query:       KOO21555.1  [L=628]
Description: ornithine decarboxylase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    9.9e-64  215.1   0.0    2.1e-63  214.0   0.0    1.5  2  Orn_Arg_deC_N    Pyridoxal-dependent decarboxylase, pyridoxal
    1.2e-11   44.7   0.0    4.6e-11   42.8   0.0    2.1  1  Orn_DAP_Arg_deC  Pyridoxal-dependent decarboxylase, C-termina
  ------ inclusion threshold ------
      0.055   13.5   0.0       0.16   12.0   0.0    1.8  1  CMD              Carboxymuconolactone decarboxylase family
      0.072   13.4   0.0       0.15   12.4   0.0    1.4  1  Init_tRNA_PT     Rit1 DUSP-like domain
      0.096   11.8   0.9       0.16   11.1   0.9    1.2  1  AdoHcyase        S-adenosyl-L-homocysteine hydrolase
       0.13   12.1   0.1       0.28   11.0   0.1    1.5  1  HTH_30           PucR C-terminal helix-turn-helix domain


Domain annotation for each model (and alignments):
>> Orn_Arg_deC_N  Pyridoxal-dependent decarboxylase, pyridoxal binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.3       1.4   4.2e+03      67     102 ..      90     127 ..      74     136 .. 0.67
   2 !  214.0   0.0   7.1e-67   2.1e-63       2     246 ..     227     468 ..     226     469 .. 0.96

  Alignments for each domain:
  == domain 1  score: -3.2 bits;  conditional E-value: 1.4
                    EESS--HHHHHHHHHCTHTEEEESSH..HHHHHHHHHH CS
  Orn_Arg_deC_N  67 anpckqreelryalekgvkvvtvdnv..eeleklakla 102
                     ++ k+++ l +  + +v    ++n   ee+ek++k a
     KOO21555.1  90 NKNLKEVDALTKTIDDQVPEEHIENItlEEVEKVDKQA 127
                    56777788888888888877777764225666666655 PP

  == domain 2  score: 214.0 bits;  conditional E-value: 7.1e-67
                    HHHHHHHHHHHHHCTCCEEEEEGGG---HHHHHHHHHTTEEEEESSHHHHHHHHHCTTTGGGEEEEESS--HHHHHHHHHCTHTEEEESSHHHHHH CS
  Orn_Arg_deC_N   2 asierklkrwkkalprikvfYavKansdlavlellaelGlgldcaSkaElelvlaagvsperiifanpckqreelryalekgvkvvtvdnveelek 97 
                    ++++r + +w+ a+pr+k+fYa+K+ + +a++ +la+ G+g+dcaS aE++l+l agvsp+riifa+p+k   ++r a++kgv++ t+d+  el+k
     KOO21555.1 227 GNVQRLYDAWHAAMPRVKPFYAMKCSPMPALIDVLAANGCGFDCASAAEIQLALDAGVSPDRIIFAHPAKRPFDIRFAASKGVTMTTFDSIIELDK 322
                    789999****************************************************************************************** PP

                    HHHHHCCEEEEEEEE-SCCSSSSTCCCSSSTTSSSSEEHCHHHHHHHHHHHHTTEEEEEEE---BSSC-SCHHHHHHHHHHHHHHHHHHHHT---S CS
  Orn_Arg_deC_N  98 laklapeakvllRiktdvsaatcelistggessKFGaaleeavealleaakeenlqlvGvsfHvGSgvsdleafvkavekalklfdelaelGvklk 193
                    +ak +p+a+ +lRi+ d+ +a  ++        K+Ga+l ++ e l   a+  +l+++GvsfHvGS ++  +af++a+e a+k+fd ++  G++  
     KOO21555.1 323 IAKWHPDAQCVLRIRADDPEAGISF------GIKYGANL-DEYENLISHARDIGLDMIGVSFHVGSLAKSGKAFYRAIECARKAFDVGTACGFHFS 411
                    *************************......********.999***************************************************** PP

                    EEE--S-B.S-HCSTTSSSSTHHHHHHHHHHHHHHHHH...TSSS-EEEE--SHHHH CS
  Orn_Arg_deC_N 194 iLdvGGGf.gveyeeeeeplkleeiaekirealeeafp...gdkevtiiaEpGRalv 246
                    +Ld+GGGf g   + +  ++++ ei   i+eale++f      +++++iaEpGR+++
     KOO21555.1 412 LLDIGGGFtGRFNSFGIVQSMVGEIPAYINEALEKFFGpdtPYSDLRVIAEPGRYFA 468
                    ********6655566788999****************88877899**********97 PP

>> Orn_DAP_Arg_deC  Pyridoxal-dependent decarboxylase, C-terminal sheet domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.8   0.0   1.5e-14   4.6e-11       6      98 .]     470     576 ..     173     576 .. 0.73

  Alignments for each domain:
  == domain 1  score: 42.8 bits;  conditional E-value: 1.5e-14
                      GGEEEEEEEEEEEEETC............EEEEEES--TTTS-HHHHCTT-S-EESBT...........T-SCEEC.EEEEEEEE-SSSSTT-E CS
                      xxxxxxxxxxxxxxxxx............xxxxxxxxxxxxxxxxxxxxxxxxxxxxx...........xxxxxxxxxxxxxxxxxxxxxxxxx RF
  Orn_DAP_Arg_deC   6 eagvLvtrViavkesek............kkfvivdaGmndllrpalygsfheipvke...........eeaekeeeeeeevdvvGptCesgDv 76 
                       ++ L+++V +v+++ +            +  + + +G+        ygsf  + v +           ++ ++ ++   +++v+GptC+s+D+
       KOO21555.1 470 ASMHLACHVHSVRNRLDrasddepdvlipTCDYLISDGL--------YGSFNCV-VYDgakprawllpgPNLPPMDTVLMRSTVFGPTCDSMDC 554
                      778899999999975545778888888876668888888........9999666.33345667788888666677888999************* PP

                      EEEEEEEEE--TT-EEEESS-S CS
                      xxxxxxxxxxxxxxxxxxxxxx RF
  Orn_DAP_Arg_deC  77 lakdrelpelevGdllafedaG 98 
                      + kd++lp+l+vGd+l+f + G
       KOO21555.1 555 VFKDVMLPQLRVGDWLLFPHFG 576
                      ******************9887 PP

>> CMD  Carboxymuconolactone decarboxylase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   5.3e-05      0.16      32      61 ..     259     290 ..     256     305 .. 0.88

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 5.3e-05
                 HHHHHTT-HH.HH.HHHHHHHHHTT--HHHHH CS
         CMD  32 avsaangcey.Cv.daHtraAleaGvteeeia 61 
                  v+aangc + C+ +a ++ Al+aGv++++i 
  KOO21555.1 259 DVLAANGCGFdCAsAAEIQLALDAGVSPDRII 290
                 599****997477*****************97 PP

>> Init_tRNA_PT  Rit1 DUSP-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   4.9e-05      0.15      59     103 ..      99     149 ..      95     151 .. 0.79

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 4.9e-05
  Init_tRNA_PT  59 lcklfdda...kls....eeqsesnitKdlirkrLqwiieaspeanPsRatL 103
                   l+k++dd+   + +    + ++ ++++K+ i ++L +++e+++++n   a+L
    KOO21555.1  99 LTKTIDDQvpeE-HieniTLEEVEKVDKQAIEDKLDKMMELYDNVNLMEAML 149
                   677888886540.1456688999**********************9766666 PP

>> AdoHcyase  S-adenosyl-L-homocysteine hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.9   5.2e-05      0.16     180     282 ..      26     127 ..      14     131 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 5.2e-05
                 --EEEE-SHHHHHHHHHHHHTT---SEEEESTTSHHHCTTHS-HHHHHHHHHHH.HHHHHHHHHTTSSS-SSEEE--CHHHHHHHHHCCCCCT------ CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   AdoHcyase 180 ikGvseetttGvhrLyelakkgkLlvpainvndsvtkskfDhpsfvmsasftnq.vlaqielfkkekkyekkvyvlpkklDekvarlhleklgakltel 277
                     +e++ttG++ L+  + +    v a   +d+++    D p   + +s+  q  + q ++ ++++   k+v  l k++D++v + h+e++  +  e 
  KOO21555.1  26 TDAATEDATTGLEDLTPAELESVYVVQADAEQDALVTGSVDEPVSGIVISYMLQdDIRQSKMLDNKN--LKEVDALTKTIDDQVPEEHIENITLEEVEK 122
                 55679*****************************99999**99877777776552689999998554..789******************998776665 PP

                 -HHHH CS
                 xxxxx RF
   AdoHcyase 278 tkeqa 282
                  ++qa
  KOO21555.1 123 VDKQA 127
                 66665 PP

>> HTH_30  PucR C-terminal helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.1   9.3e-05      0.28       6      37 ..     458     489 ..     457     490 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 9.3e-05
                 HHHHHTTT-HHHHHHHHTS-HHHHHHHHHHHH CS
      HTH_30   6 raylenggnisatAkaLhvHrnTlryRLrrie 37 
                 r+  e g+  ++++ +L +H++++r+RL+r++
  KOO21555.1 458 RVIAEPGRYFAEASMHLACHVHSVRNRLDRAS 489
                 566666777789999***************86 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (628 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       706  (0.0393775); expected 358.6 (0.02)
Passed bias filter:                      528  (0.0294495); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.59u 0.25s 00:00:00.84 Elapsed: 00:00:00.40
# Mc/sec: 4766.93
//
Query:       KOO21556.1  [L=430]
Description: spx and exs domain-containing protein 1-like protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.4e-73  248.1   8.9    1.4e-73  248.1   8.9    1.4  2  EXS       EXS family


Domain annotation for each model (and alignments):
>> EXS  EXS family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.2       0.2   3.6e+03       7      23 ..       9      25 ..       4      37 .. 0.66
   2 !  248.1   8.9     8e-78   1.4e-73       5     331 .]      47     402 ..      44     402 .. 0.82

  Alignments for each domain:
  == domain 1  score: -3.1 bits;  conditional E-value: 0.2
         EXS  7 vlllvvlglllwalnlh 23
                 +llv+l+l l+ +nlh
  KOO21556.1  9 AILLVTLMLALLVVNLH 25
                45566666666666665 PP

  == domain 2  score: 248.1 bits;  conditional E-value: 8e-78
         EXS   5 yrvlllvvlglllwalnlhvlsklginyalifeldpr.sslsyrqlyelaalllllllllllllllsaevd....alellplllllllllllllplnil 98 
                 +r +ll+vl++ +w++++ v++++++++ +++    +    +y+ +++   ll+lll++ ll +++s++      ++ +   +l ++++l+  lp n++
  KOO21556.1  47 VRPPLLIVLVVGGWGWVISVCQAARLEVDHVLGGPVQmPGATYHAALQ---LLCLLLAAHLLHFWASETPGvtwrPWLVSNCALNVAFFLIGALPCNLF 142
                 6899****************************9965435555555555...5555555544445552222222224446677888889999999***** PP

         EXS  99 yrssrrrflrtllrillaplapvefadfllaDiltSlakvlgDlaltvclya.................sswseedrkcgsssvvvplllslPyliRfr 180
                 y +sr ++lrtl++ l+ap+apv+f ++++aD ltSlak+++Dl++t+c+ +                 + w+++ + c  s  v  ++l+lP+++R++
  KOO21556.1 143 YGDSRLSLLRTLFESLIAPFAPVTFWHVIVADYLTSLAKAMSDLQITMCISSgiflgdadgegnyarttTLWHQSYKSCADS-PVNGIFLALPFWWRLM 240
                 ***************************************************7667877777766665544444447788666.7889************ PP

         EXS 181 QclreyrdtkkrphllNalKYatafpvivlsalqrlsksdesestlrvlwllaalvnslysfiWDvtmDWgLlkllk......s...........knwf 262
                 Qclr y +t++ ++l+NalKY+tafp +++ +l++++ s+       +l++l+a+v+s+y +iWDv mDWgL+++ +      +               
  KOO21556.1 241 QCLRVYSETREVKNLWNALKYSTAFPLVYAGYLKKHEPSA----FHEQLFILCAVVQSTYCLIWDVHMDWGLFRRANlggrypDetgsaycggpaAVCA 335
                 **********99***********************99999....7799*************************55555555550555555555555567 PP

         EXS 263 lRdellypk.kwvYylaivldlvlRftWslklsshlhsiqeselgvfllellEvlRRwvWvffRvEnEhv 331
                 +R+ ll+++ k+vY l +v+dlvlRf+W+l+++     +    lg++++e++E+lRR vW +fR+E+E+v
  KOO21556.1 336 MREPLLVTRsKSVYILLCVFDLVLRFAWALSVFGG---VPGRGLGMLFFEVIEILRRHVWAVFRIEWEVV 402
                 9988766665***********************66...555569************************86 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (430 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       413  (0.0230353); expected 358.6 (0.02)
Passed bias filter:                      253  (0.0141112); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.25s 00:00:00.71 Elapsed: 00:00:00.42
# Mc/sec: 3109.56
//
Query:       KOO21557.1  [L=350]
Description: tccd-inducible-parp-like domain-containing protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.1e-15   57.8   0.0    3.5e-15   56.1   0.0    1.9  1  PARP      Poly(ADP-ribose) polymerase catalytic domain
     0.0042   17.3   0.0       0.84    9.9   0.0    2.6  2  MHB       Haemophore, haem-binding


Domain annotation for each model (and alignments):
>> PARP  Poly(ADP-ribose) polymerase catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.1   0.0   3.9e-19   3.5e-15      20     194 ..     119     348 ..     105     349 .. 0.74

  Alignments for each domain:
  == domain 1  score: 56.1 bits;  conditional E-value: 3.9e-19
                 TEEEEEEEEEEEEETTHHHHCGCCGG.....................................SS-EEEEEEEE-GGGHHHHHHH-S--S-TTS-.GGG CS
        PARP  20 ayklkileifrvqregeaerfqekkk.....................................lrnrrlLfHGsrltnvasilsqGLriappeap.vtG 80 
                   +l++   +r+++++++e++ +  +                                     + n+  L HG++  ++ +ils G+  + ++a+   G
  KOO21557.1 119 HDRLELACAWRLENPSLWEKYMSGVQgvmndmkrirqgrvasaggappltcrvadalpgdlrvDVNEAFLMHGTNAGVLINILSTGM--NERFAGtAAG 215
                 348888889999999999999988778888888888777777777777777777777777777778*********************..6666661579 PP

                 STTSSSEEEBSSHHHHHGGG--BSSS-EEE....................EEEEEEE--SEEEESS--T.GCCGGTT-SEEEE-EEEEE..GG.EEETT CS
        PARP  81 ymfGkGiYfAddaskSanYcktsekkgsgl....................llLaeValGdikeltkady.lekakkgkksvkgkgktep..esivekdg 156
                 + +G+G+Y+A+da k  +Y+k +++  +g                     +l+++ValG     +++ + +++  +g              ++  +  g
  KOO21557.1 216 AAYGEGSYLAEDAGKNDQYTKVDQQY-DGSselhkrlyahgarhpgmvfyILVCRVALGHQVRTQEHGPlATSSDTGRRVF------PIsfRELDTVAG 307
                 9********************84443.3334689999***********************444444444333333333322......222222233444 PP

                 ..E--S-E.EE-S--SSSEEE-EEEESSGGGEEEEEEEEEE CS
        PARP 157 ..vPlgks.satkyesseleyneyvvydkeqvrlkYLlevk 194
                   +P  +     +  +    y+ey+v++ e ++++YLl ++
  KOO21557.1 308 vsPPVHHHsLLADVIGIGRRYREYIVFHSEYIYPEYLLAYQ 348
                 657777654555555555********************985 PP

>> MHB  Haemophore, haem-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.4   0.0    0.0048        43      48      67 ..     136     155 ..     128     160 .. 0.89
   2 !    9.9   0.0   9.4e-05      0.84       7      49 ..     208     250 ..     205     261 .. 0.80

  Alignments for each domain:
  == domain 1  score: 4.4 bits;  conditional E-value: 0.0048
         MHB  48 vkaYfdanPqvaadLrgIrq 67 
                 +++Y+   + v++d+++Irq
  KOO21557.1 136 WEKYMSGVQGVMNDMKRIRQ 155
                 789****************9 PP

  == domain 2  score: 9.9 bits;  conditional E-value: 9.4e-05
         MHB   7 dlarvvsgVaastsaYLdthPdvnqaltslkgqprdqaraavk 49 
                  +a++++g+a   ++YL++  + n+ +t++ +q +  ++ + +
  KOO21557.1 208 RFAGTAAGAAYGEGSYLAEDAGKNDQYTKVDQQYDGSSELHKR 250
                 789*****************************99855544444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (350 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       773  (0.0431145); expected 358.6 (0.02)
Passed bias filter:                      465  (0.0259356); expected 358.6 (0.02)
Passed Vit filter:                        50  (0.00278878); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.52u 0.23s 00:00:00.75 Elapsed: 00:00:00.41
# Mc/sec: 2591.46
//
Query:       KOO21558.1  [L=1641]
Description: p-loop containing nucleoside triphosphate hydrolase protein, partial [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    4.2e-16   59.5   0.1    8.8e-08   32.2   0.0    2.6  2  AAA_11         AAA domain
    4.2e-05   23.3   0.0    7.4e-05   22.4   0.0    1.4  1  AAA_12         AAA domain
     0.0084   15.8   0.1      0.026   14.3   0.0    1.9  2  AAA_30         AAA domain
  ------ inclusion threshold ------
      0.052   13.5   2.2       0.81    9.7   1.7    2.7  2  Zn_Tnp_IS1595  Transposase zinc-ribbon domain
       0.14   12.5   0.0       0.31   11.4   0.0    1.6  1  AAA_19         AAA domain


Domain annotation for each model (and alignments):
>> AAA_11  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.2   0.0   2.5e-11   8.8e-08       5     202 ..     801     992 ..     797     994 .. 0.70
   2 !   24.4   0.1   6.2e-09   2.2e-05     150     235 ..    1379    1464 ..    1302    1474 .. 0.84

  Alignments for each domain:
  == domain 1  score: 32.2 bits;  conditional E-value: 2.5e-11
      AAA_11   5 sqreaiksalseseitliqGPPGtgKTktivellsqllsrrk.seeeksakpriLvCapSNaAvDellerllrglldsegekykpkivRvgnee..... 97 
                 +q++a+ +al+ s   + qGPPGtgK+ t v+l+++l+ +r+   +++++   i v a  N A De+l+ + +  +++   +   +++R g++e     
  KOO21558.1 801 TQLDAFCNALQYSV-HCTQGPPGTGKSYTGVQLIAALNIMRQaLIAHGQPVGPIIVLAYKNHALDEILLDVKS--HSALNCNLPGSLIRCGKSEderlw 896
                 68889999999885.99********************8664448889999*********************99..333333334489*******98887 PP

      AAA_11  98 .eriseavksvsleekvekrlekeekaqlakeiskeleklakelrafeeeeekeklkkskekskskleqerrklkkerkelskeleeaeesleeevlde 195
                   + + ++++ ++e+ + +rl++    +++++  + l++l+++l  +        ++ s e +++ l ++ +k++++     ++l+ ++ s+ +++ d 
  KOO21558.1 897 kHAEHFSAEEKTWEHALTERLNS---LRQMRNFGRDLQDLSSHLMVNVPAL----QHGSVEARSQLLVWRPSKCTAQG---CTNLRIQNTSALQTLCDA 985
                 75567778888888888888866...7888888888888888774443332....33333444444444444444333...333333344444566666 PP

      AAA_11 196 aeivltT 202
                 + +v++T
  KOO21558.1 986 HACVVCT 992
                 6666665 PP

  == domain 2  score: 24.4 bits;  conditional E-value: 6.2e-09
      AAA_11  150 eklkkskekskskleqerrklkkerkelskeleeaeesleeevldeaeivltTlsgagsklleklakkfdvviIDEAaqavEpstl 235 
                  + +  +++ + +k++   + l+++++ l +e ++ +++++++  ++a+i+ +T++ga+++l    a++  +vi+ EA+  +Ep  +
  KOO21558.1 1379 DHRWLAASRFVQKMSDIVNVLRDQAEPLLDEARQGRAEASAQTFKNAQIIGSTVVGAARRLSALRAAEPFAVIVEEACEVMEPTLM 1464
                  5555566667788888889999***********************************9988777777999************9876 PP

>> AAA_12  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.4   0.0   2.1e-08   7.4e-05       2     118 ..    1490    1641 .]    1489    1641 .] 0.80

  Alignments for each domain:
  == domain 1  score: 22.4 bits;  conditional E-value: 2.1e-08
      AAA_12    2 erSlferllkke................kekvvlLdtqYRmhpeIsrfpsklfYkgkLkdae..svkkrele..................aqealee 62  
                  + Slferl++ +                 ++  +L++q+Rm+p+Is++ + ++ +  L +++  +  +++                    +  +l  
  KOO21558.1 1490 KVSLFERLVTGGqtsrerhghrderarsVASFDVLEEQWRMRPAISDLTRGHYADLVLIKDHarT-VSQRIGdrvvvatsseslerdtwhTRGRLVP 1585
                  689999999998999999999999988778889***************99886666554444342.3322225777788888888888764444444 PP

      AAA_12   63 plep.lvfidvekseeekekkeksyiNeeEaelvvklvekllkkgseeerkkigvit 118 
                     p ++f+d+ +++  +     s +N+ Ea+++++ v++l++ +     + i +it
  KOO21558.1 1586 GIVPqVYFWDLPNNAVGRPVAGLSACNYVEANAIASAVKYLVTLCGVP-PSTISIIT 1641
                  555559******9999999888*************************9.9******8 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.3   0.0   7.2e-06     0.026       2      60 ..     798     864 ..     797     879 .. 0.74
   2 ?   -3.2   0.1       1.6   5.7e+03      99     141 ..    1412    1452 ..    1378    1466 .. 0.52

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 7.2e-06
      AAA_30   2 lnaeQaaavealltsgdrvavltGpAGtGKttalkalreaweaag..........grviglAptgkaAk 60 
                 l   Q +a+ ++l+ +  v++ +Gp+GtGK+++  +l +a++             g++i+lA ++ a +
  KOO21558.1 798 LYGTQLDAFCNALQYS--VHCTQGPPGTGKSYTGVQLIAALNIMRqaliahgqpvGPIIVLAYKNHALD 864
                 6789*********999..9************97555544444332234455578888888888877765 PP

  == domain 2  score: -3.2 bits;  conditional E-value: 1.6
      AAA_30   99 mvdtkqlaallkaaekagakvilvGDerQlasVeaGgvlrdlv 141 
                     ++  a+ +k a+  g    +vG  r l++  a ++++ +v
  KOO21558.1 1412 QGRAEASAQTFKNAQIIGS--TVVGAARRLSALRAAEPFAVIV 1452
                  3333333333333333222..2345555555555555555554 PP

>> Zn_Tnp_IS1595  Transposase zinc-ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   1.7   0.00022      0.81      19      44 ..     134     159 ..     126     161 .. 0.90
   2 ?    0.9   0.0      0.13   4.7e+02      10      28 ..     554     572 ..     549     580 .. 0.81

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 0.00022
  Zn_Tnp_IS1595  19 fvCPhCgsrkayriktrglfqCkeCr 44 
                    +vC +C s+ + r+ t g+f C++C 
     KOO21558.1 134 QVCEYCRSKAVGRTDTDGVFYCNSCW 159
                    79***********************5 PP

  == domain 2  score: 0.9 bits;  conditional E-value: 0.13
  Zn_Tnp_IS1595  10 LealrWpngfvCPhCgsrk 28 
                    + ++ W++g + P+C +++
     KOO21558.1 554 MLTFYWGAGAIAPRCRHQQ 572
                    56789****9999999875 PP

>> AAA_19  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   8.7e-05      0.31       4      58 ..     805     866 ..     802     921 .. 0.85

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 8.7e-05
      AAA_19   4 ave.alkekvllvtaGpGtGKTrvlkhivallvelggvkp......eeillvaftgrAakel 58 
                 a   al+ +v +  ++pGtGK+++ ++ +a l+ +++          +i+++a+ ++A +e+
  KOO21558.1 805 AFCnALQYSVHCTQGPPGTGKSYTGVQLIAALNIMRQALIahgqpvGPIIVLAYKNHALDEI 866
                 55338888999999**********999999888776553355666699**********9997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1641 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       835  (0.0465726); expected 358.6 (0.02)
Passed bias filter:                      585  (0.0326287); expected 358.6 (0.02)
Passed Vit filter:                        69  (0.00384851); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 1.01u 0.28s 00:00:01.29 Elapsed: 00:00:00.45
# Mc/sec: 11030.82
//
Query:       KOO21559.1  [L=413]
Description: isopentenyl-diphosphate delta-isomerase, partial [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    2.8e-56  191.2   0.0    3.4e-43  148.1   0.0    2.1  2  ABC_ATPase   Predicted ATPase of the ABC class
    3.6e-07   29.7   0.0    6.1e-07   29.0   0.0    1.2  1  Pkinase_Tyr  Protein tyrosine kinase
     0.0001   21.8   0.0    0.00016   21.2   0.0    1.2  1  Pkinase      Protein kinase domain
  ------ inclusion threshold ------
      0.036   13.9   0.2      0.059   13.2   0.2    1.2  1  Birna_VP4    Birnavirus VP4 protein


Domain annotation for each model (and alignments):
>> ABC_ATPase  Predicted ATPase of the ABC class
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.8   0.0   1.3e-14   5.9e-11       3      64 ..      12      75 ..      10      79 .. 0.92
   2 !  148.1   0.0   7.7e-47   3.4e-43     327     431 ..      77     181 ..      73     188 .. 0.96

  Alignments for each domain:
  == domain 1  score: 41.8 bits;  conditional E-value: 1.3e-14
                HHHHHHHHTTTSBGGGGGGGTT-.EESSS.EEEEES---SSTTSS-EEEEEEEE--S-HHSSSS CS
  ABC_ATPase  3 elektlksldgkgykaYkelkge.ydlsd.ltllidrvqsdpfappSkvrvsvpaavakleeel 64
                el +tl s+dgk+y aY++++ + yd++  +tl+id+vqsdpfappS+++v+vp   a+++ ++
  KOO21559.1 12 ELCRTLLSIDGKPYPAYHDIEKTdYDMGGrFTLCIDHVQSDPFAPPSQCHVRVPLVLAGFPPST 75
                78899*****************99***977*************************999998765 PP

  == domain 2  score: 148.1 bits;  conditional E-value: 7.7e-47
                 HHHHHHHHHHHHTT-SEEEEEGGGS-HHHH---HHHHHHS-GGG--B--HHHCHHHHHHHH--EEEEEESS-GCCTTT-SEEEEEETTEEEE-HHHHHH CS
  ABC_ATPase 327 tsqAanimealeagakllLiDEDtsAtNlmirDermqelvskekepitplvdrvrelykklgvstilvvggsgdyldvAdtvilmeeykpkdvtekake 425
                 t +Aa+i+eale ga++lL+DEDtsAtN+++rD+rmq+lv+ +kepi+p++ rvr l+ +lgvst+lv ggsgdy+dvAdtv++++ey++ dvte+ake
  KOO21559.1  77 TPKAAAIIEALETGASALLMDEDTSATNFLMRDARMQALVAADKEPIKPFITRVRGLWGSLGVSTVLVLGGSGDYFDVADTVLMLDEYRCADVTERAKE 175
                 678************************************************************************************************ PP

                 HHHCHT CS
  ABC_ATPase 426 iaeela 431
                 ia++ a
  KOO21559.1 176 IAASIA 181
                 *98765 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.0   0.0   1.4e-10   6.1e-07       4      84 ..     331     410 ..     329     412 .. 0.83

  Alignments for each domain:
  == domain 1  score: 29.0 bits;  conditional E-value: 1.4e-10
                  EEEEEEESSEEEEEEEEETTTTSSEEEEEEEEESTTSSHHHHHHHHH.HHHHHHTS-BTTB--EEEEEE.SSSSEEEEEE--T CS
  Pkinase_Tyr   4 gkklGeGafGkVvegtlkgekekkevkVavKtlkeeateeekeelle.eakimkklkhpnivkllgvct.keepllivteyvk 84 
                  +++l++GafG+V  ++l+   +   + +avK+ + ++ +  ke+l   +   mk+++hpnivk lg+      ++ +++e+++
   KOO21559.1 331 QTTLAKGAFGTVALAKLN---QLGGLPCAVKIADVHSGDGLKEALALlDEGSMKNMSHPNIVKTLGIAFdAPAKIGLIMELMS 410
                  5789**************...88999******987776665555433355679****************6667799*****97 PP

>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.2   0.0   3.5e-08   0.00016       6      82 ..     333     411 ..     330     413 .] 0.85

  Alignments for each domain:
  == domain 1  score: 21.2 bits;  conditional E-value: 3.5e-08
                 EEEEESSEEEEEEE.ETTTTEEEEEEEEECHCHCHHHHHHHHHHHHHHHHHSCTTB--EEEE.EEESSEEEEEEE--TT CS
     Pkinase   6 klGeGsfGkVykav.eketgkivAvKkikkekakkkkekkvlrEikilkklkhpnivrlyev.feekdelylvleyveg 82 
                 +l +G+fG+V  a+ ++  g   AvK+ ++++ +  ke  +l     +k+++hpniv+ +++ f  + ++ l++e++++
  KOO21559.1 333 TLAKGAFGTVALAKlNQLGGLPCAVKIADVHSGDGLKEALALLDEGSMKNMSHPNIVKTLGIaFDAPAKIGLIMELMSC 411
                 6779******999725556788*************9998888888899**********9997256699999*****986 PP

>> Birna_VP4  Birnavirus VP4 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.2   1.3e-05     0.059       7      37 ..      74     104 ..      63     120 .. 0.86

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 1.3e-05
   Birna_VP4   7 stLfPqaaPligaideladallGDkaqsasG 37 
                 stL P+aa +i+a++ +a all D+  sa+ 
  KOO21559.1  74 STLTPKAAAIIEALETGASALLMDEDTSATN 104
                 8***********************9999976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (413 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       503  (0.0280551); expected 358.6 (0.02)
Passed bias filter:                      400  (0.0223102); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.53u 0.27s 00:00:00.80 Elapsed: 00:00:00.46
# Mc/sec: 2704.34
//
Query:       KOO21560.1  [L=156]
Description: hypothetical protein Ctob_000476 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.2e-08   34.6   0.2    2.8e-08   33.4   0.0    1.7  2  PQ-loop   PQ loop repeat


Domain annotation for each model (and alignments):
>> PQ-loop  PQ loop repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.1      0.36   6.5e+03       5      19 ..      10      24 ..       7      24 .. 0.76
   2 !   33.4   0.0   1.5e-12   2.8e-08       7      57 ..      33      83 ..      30      87 .. 0.90

  Alignments for each domain:
  == domain 1  score: -3.0 bits;  conditional E-value: 0.36
     PQ-loop  5 lgyislvlwlvsyiP 19
                 +y +++++++s  P
  KOO21560.1 10 ASYGGACVYAMSAAP 24
                578888888888766 PP

  == domain 2  score: 33.4 bits;  conditional E-value: 1.5e-12
     PQ-loop  7 yislvlwlvsyiPQiikNykrkSteGlSilflllwllGdilsllylilngf 57
                +++++l   +++PQ+++N +r+S +G S+l+  l+++G + +l+++i+   
  KOO21560.1 33 TVATLLNTGALLPQLYQNLRRRSPGGYSPLTAGLACAGCSVRLFTTIALAG 83
                5778888899************************************98765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (156 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       401  (0.022366); expected 358.6 (0.02)
Passed bias filter:                      279  (0.0155614); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.26s 00:00:00.65 Elapsed: 00:00:00.42
# Mc/sec: 1128.21
//
Query:       KOO21561.1  [L=370]
Description: hypothetical protein Ctob_000475 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
     0.0099   15.9   2.6      0.025   14.6   2.6    1.7  1  DUF4235   Protein of unknown function (DUF4235)


Domain annotation for each model (and alignments):
>> DUF4235  Protein of unknown function (DUF4235)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.6   2.6   1.4e-06     0.025      47      73 ..     271     297 ..     246     300 .. 0.79

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 1.4e-06
     DUF4235  47 llfAaisGavlavvrvaadRgtargve 73 
                  l+Aa+++av+ ++r a+ R+targv+
  KOO21561.1 271 ALAAAVTAAVTVAAREAVARATARGVQ 297
                 589**********************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (370 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       927  (0.0517039); expected 358.6 (0.02)
Passed bias filter:                      431  (0.0240393); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.26s 00:00:00.74 Elapsed: 00:00:00.41
# Mc/sec: 2717.99
//
Query:       KOO21562.1  [L=430]
Description: hypothetical protein Ctob_000474 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.1e-25   86.4   2.5    2.6e-05   23.8   0.0    6.5  5  EF-hand_6       EF-hand domain
    2.1e-23   80.1   3.5    1.1e-05   24.6   0.2    6.4  6  EF-hand_1       EF hand
    7.7e-20   71.1   5.3    9.1e-06   26.0   0.2    4.8  4  EF-hand_7       EF-hand domain pair
    1.4e-16   59.1   7.3    0.00032   20.0   0.1    6.1  7  EF-hand_5       EF hand
    6.5e-14   51.5   4.2     0.0097   15.7   0.0    5.3  5  EF-hand_8       EF-hand domain pair
     0.0002   21.8   0.0      0.012   16.2   0.0    2.7  2  DUF4473         Domain of unknown function (DUF4473)
     0.0041   17.4   0.3        4.6    7.6   0.0    4.1  4  SPARC_Ca_bdg    Secreted protein acidic and rich in cysteine 
  ------ inclusion threshold ------
      0.011   16.1   1.3         94    3.5   0.0    5.0  7  EF-hand_9       EF-hand domain
      0.029   14.3   7.9        1.8    8.5   0.1    4.6  5  EF-hand_4       Cytoskeletal-regulatory complex EF hand
      0.036   13.9   0.2       0.44   10.4   0.0    2.8  3  Cas9_b_hairpin  CRISPR-associated endonuclease Cas9 beta-hair


Domain annotation for each model (and alignments):
>> EF-hand_6  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.8   0.0   5.7e-07     0.001       2      27 ..      54      79 ..      53      85 .. 0.89
   2 ?    5.5   0.0     0.011        20       2      27 ..      94     119 ..      93     126 .. 0.84
   3 !   23.8   0.0   1.5e-08   2.6e-05       2      30 ..     204     234 ..     203     238 .. 0.88
   4 !    7.8   0.0     0.002       3.5       1      24 [.     243     266 ..     243     267 .. 0.92
   5 !   20.9   0.2   1.2e-07   0.00022       2      27 ..     354     379 ..     353     403 .. 0.94

  Alignments for each domain:
  == domain 1  score: 18.8 bits;  conditional E-value: 5.7e-07
   EF-hand_6  2 lreaFklfDkdgdGkidaeElrkalr 27
                ++++F + D dg+G i+++El  a r
  KOO21562.1 54 WHQLFSQVDEDGSGVITFDELEVAVR 79
                6799*****************88777 PP

  == domain 2  score: 5.5 bits;  conditional E-value: 0.011
   EF-hand_6   2 lreaFklfDkdgdGkidaeElrkalr 27 
                 l++++ ++D ++d ++ aeE+++++ 
  KOO21562.1  94 LKALWCALDGNDDDSVAAEEFKRFII 119
                 6778889***************9876 PP

  == domain 3  score: 23.8 bits;  conditional E-value: 1.5e-08
   EF-hand_6   2 lreaFklfDkdgdGkidaeElrkalrk..al 30 
                 ++ +F ++D++gdG i+++El +a+r+  +l
  KOO21562.1 204 WHNLFTALDVSGDGVITFDELERAIRTqlKL 234
                 5689**********************86655 PP

  == domain 4  score: 7.8 bits;  conditional E-value: 0.002
   EF-hand_6   1 elreaFklfDkdgdGkidaeElrk 24 
                 +l+++F  +D ++d+++ ++E+++
  KOO21562.1 243 RLKALFCSLDANDDNSVRPAEFKS 266
                 5899******************97 PP

  == domain 5  score: 20.9 bits;  conditional E-value: 1.2e-07
   EF-hand_6   2 lreaFklfDkdgdGkidaeElrkalr 27 
                 ++++F++ D+dg+G+++++E++ + r
  KOO21562.1 354 WYALFREADVDGSGEVTFDEFQIVVR 379
                 6789******************9987 PP

>> EF-hand_1  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.2   0.0   3.7e-08   6.6e-05       3      28 ..      55      80 ..      53      81 .. 0.90
   2 ?    2.9   0.0     0.054        96       2      26 ..      94     118 ..      93     121 .. 0.88
   3 !   19.6   0.0   2.5e-07   0.00045       3      28 ..     205     230 ..     203     231 .. 0.90
   4 ?    3.1   0.0     0.047        84       2      25 ..     244     267 ..     243     270 .. 0.91
   5 !   24.6   0.2   6.2e-09   1.1e-05       4      27 ..     356     379 ..     354     381 .. 0.89
   6 ?    3.0   0.0      0.05        90      15      27 ..     380     392 ..     379     394 .. 0.87

  Alignments for each domain:
  == domain 1  score: 22.2 bits;  conditional E-value: 3.7e-08
                HHHHHHHTTTSSSEEEHHHHHHHHHH CS
   EF-hand_1  3 keiFrefDkDgdGkIdfeEfkellkk 28
                 ++F+ +D Dg+G I+f+E+  ++++
  KOO21562.1 55 HQLFSQVDEDGSGVITFDELEVAVRS 80
                689*****************999886 PP

  == domain 2  score: 2.9 bits;  conditional E-value: 0.054
                 HHHHHHHHTTTSSSEEEHHHHHHHH CS
   EF-hand_1   2 lkeiFrefDkDgdGkIdfeEfkell 26 
                 lk ++  +D + d  +  eEfk+++
  KOO21562.1  94 LKALWCALDGNDDDSVAAEEFKRFI 118
                 67889999**************987 PP

  == domain 3  score: 19.6 bits;  conditional E-value: 2.5e-07
                 HHHHHHHTTTSSSEEEHHHHHHHHHH CS
   EF-hand_1   3 keiFrefDkDgdGkIdfeEfkellkk 28 
                  ++F  +D+ gdG I+f+E+ +++++
  KOO21562.1 205 HNLFTALDVSGDGVITFDELERAIRT 230
                 679******************99986 PP

  == domain 4  score: 3.1 bits;  conditional E-value: 0.047
                 HHHHHHHHTTTSSSEEEHHHHHHH CS
   EF-hand_1   2 lkeiFrefDkDgdGkIdfeEfkel 25 
                 lk +F  +D + d  +   Efk++
  KOO21562.1 244 LKALFCSLDANDDNSVRPAEFKSF 267
                 7899*****************976 PP

  == domain 5  score: 24.6 bits;  conditional E-value: 6.2e-09
                 HHHHHHTTTSSSEEEHHHHHHHHH CS
   EF-hand_1   4 eiFrefDkDgdGkIdfeEfkellk 27 
                  +Fre+D+Dg+G ++f+Ef+ +++
  KOO21562.1 356 ALFREADVDGSGEVTFDEFQIVVR 379
                 68*****************98876 PP

  == domain 6  score: 3.0 bits;  conditional E-value: 0.05
                 SEEEHHHHHHHHH CS
   EF-hand_1  15 GkIdfeEfkellk 27 
                 G+++f+E++++ +
  KOO21562.1 380 GFVTFKELQDATR 392
                 9*******99865 PP

>> EF-hand_7  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.2   0.1   9.4e-09   1.7e-05       5      70 ..      55     118 ..      53     119 .. 0.90
   2 !   23.5   0.0   3.1e-08   5.6e-05       5      68 ..     205     266 ..     201     267 .. 0.85
   3 !   26.0   0.2   5.1e-09   9.1e-06       3      70 ..     243     378 ..     241     379 .. 0.71
   4 ?   -0.8   0.0       1.2   2.1e+03      17      57 ..     380     418 ..     378     423 .. 0.56

  Alignments for each domain:
  == domain 1  score: 25.2 bits;  conditional E-value: 9.4e-09
   EF-hand_7   5 keaFkelDtdgdgyldkeellrllrkifqgagegsklsdeelellfkefDtdkdGvisfdEFlkly 70 
                 ++ F + D dg+g ++ +el+ ++r+ + +    +++s+ +l++l+  +D ++d+++  +EF++++
  KOO21562.1  55 HQLFSQVDEDGSGVITFDELEVAVRS-KLK-LSSKDFSRASLKALWCALDGNDDDSVAAEEFKRFI 118
                 789******************88885.333.89999999***********************9885 PP

  == domain 2  score: 23.5 bits;  conditional E-value: 3.1e-08
   EF-hand_7   5 keaFkelDtdgdgyldkeellrllrkifqgagegsklsdee.lellfkefDtdkdGvisfdEFlk 68 
                 +  F +lD+ gdg ++ +el+r++r        g kl + + l++lf  +D ++d ++   EF+ 
  KOO21562.1 205 HNLFTALDVSGDGVITFDELERAIRTQL---KLGPKLLSAHrLKALFCSLDANDDNSVRPAEFKS 266
                 678*********************9744...66666666555*****************999986 PP

  == domain 3  score: 26.0 bits;  conditional E-value: 5.1e-09
   EF-hand_7   3 klkeaFkelDtdgdgyldkeellr...............................llrkifqga................................... 35 
                 +lk  F +lD ++d++++++e+++                                                                           
  KOO21562.1 243 RLKALFCSLDANDDNSVRPAEFKSfrdrytppkrsrqrfggkgfvkggalseiatS-------Ealapaptkvmraeleaageplpdeaeldaiartfy 334
                 68899******************877777777776666666666666654444440.......155566666666666655666666666666666666 PP

   EF-hand_7  36 .......gegsklsd..eelellfkefDtdkdGvisfdEFlkly 70 
                        ++g kl     +  +lf+e D d++G+++fdEF+  +
  KOO21562.1 335 eqleqarHRGTKLANgiASWYALFREADVDGSGEVTFDEFQIVV 378
                 65566667777777666778899*****************9765 PP

  == domain 4  score: -0.8 bits;  conditional E-value: 1.2
   EF-hand_7  17 gyldkeellrllrkifqga.gegsklsdeelellfkefDtdk 57 
                 g+++  el+++ r    +    + +ls+ +l++l+  +D d+
  KOO21562.1 380 GFVTFKELQDATRT---KLrVSKAELSEGQLKALWCVLDADD 418
                 67777777776653...1125555555566666655555555 PP

>> EF-hand_5  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.0   0.0   3.8e-07   0.00069       4      22 ..      57      75 ..      55      78 .. 0.91
   2 ?   -1.6   0.1       1.2   2.2e+03      18      24 ..     111     117 ..     111     118 .. 0.84
   3 !   16.3   0.0   2.7e-06    0.0048       4      23 ..     207     226 ..     205     228 .. 0.91
   4 ?    2.0   0.0     0.092   1.7e+02       1      24 [.     244     267 ..     244     267 .. 0.84
   5 !   20.0   0.1   1.8e-07   0.00032       3      24 ..     356     377 ..     355     378 .. 0.90
   6 ?   -1.4   0.0       1.1   1.9e+03      14      22 ..     380     388 ..     380     389 .. 0.90
   7 ?   -2.4   0.0       2.3   4.1e+03      15      22 ..     396     403 ..     396     405 .. 0.84

  Alignments for each domain:
  == domain 1  score: 19.0 bits;  conditional E-value: 3.8e-07
                HHHHH-SS-SSCE-HHHHH CS
   EF-hand_5  4 tFqaiDlNgDGkIskeELk 22
                +F+++D +g+G I+++EL+
  KOO21562.1 57 LFSQVDEDGSGVITFDELE 75
                7****************97 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 1.2
                 HHHHHHH CS
   EF-hand_5  18 keELktl 24 
                 +eE+k++
  KOO21562.1 111 AEEFKRF 117
                 59***98 PP

  == domain 3  score: 16.3 bits;  conditional E-value: 2.7e-06
                 HHHHH-SS-SSCE-HHHHHH CS
   EF-hand_5   4 tFqaiDlNgDGkIskeELkt 23 
                 +F a+D+ gDG I+++EL++
  KOO21562.1 207 LFTALDVSGDGVITFDELER 226
                 699***************87 PP

  == domain 4  score: 2.0 bits;  conditional E-value: 0.092
                 HHHHHHHH-SS-SSCE-HHHHHHH CS
   EF-hand_5   1 lkdtFqaiDlNgDGkIskeELktl 24 
                 lk++F  +D+N D  + + E+k +
  KOO21562.1 244 LKALFCSLDANDDNSVRPAEFKSF 267
                 57788889*****99999999875 PP

  == domain 5  score: 20.0 bits;  conditional E-value: 1.8e-07
                 HHHHHH-SS-SSCE-HHHHHHH CS
   EF-hand_5   3 dtFqaiDlNgDGkIskeELktl 24 
                 ++F+++D++g+G ++++E++ +
  KOO21562.1 356 ALFREADVDGSGEVTFDEFQIV 377
                 68*****************965 PP

  == domain 6  score: -1.4 bits;  conditional E-value: 1.1
                 SCE-HHHHH CS
   EF-hand_5  14 GkIskeELk 22 
                 G++++ EL+
  KOO21562.1 380 GFVTFKELQ 388
                 99*****98 PP

  == domain 7  score: -2.4 bits;  conditional E-value: 2.3
                 CE-HHHHH CS
   EF-hand_5  15 kIskeELk 22 
                 ++sk EL 
  KOO21562.1 396 RVSKAELS 403
                 69****97 PP

>> EF-hand_8  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.3   0.1   3.1e-05     0.056      31      48 ..      57      74 ..      54      81 .. 0.90
   2 ?   -0.7   0.0      0.75   1.3e+03       5      17 ..      84      97 ..      80     122 .. 0.61
   3 !   15.7   0.0   5.4e-06    0.0097       2      50 ..     216     266 ..     206     271 .. 0.89
   4 !   13.6   0.1   2.5e-05     0.045      30      48 ..     356     374 ..     355     376 .. 0.96
   5 !    5.3   0.0    0.0098        18       2      40 ..     379     419 ..     379     423 .. 0.78

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 3.1e-05
   EF-hand_8 31 lfrefDtdgdGkisfeEF 48
                lf+ +D+dg+G+i+f+E 
  KOO21562.1 57 LFSQVDEDGSGVITFDEL 74
                8***************96 PP

  == domain 2  score: -0.7 bits;  conditional E-value: 0.75
   EF-hand_8  5 Itreelrril.ril 17
                ++  +++r++ ++l
  KOO21562.1 84 LSSKDFSRASlKAL 97
                66777777776665 PP

  == domain 3  score: 15.7 bits;  conditional E-value: 5.4e-06
   EF-hand_8   2 kgkItreelrril.rilglkk.glseeevdilfrefDtdgdGkisfeEFcv 50 
                 +g+It++el r++ + l+l    ls++ + +lf  +D ++d+ +   EF  
  KOO21562.1 216 DGVITFDELERAIrTQLKLGPkLLSAHRLKALFCSLDANDDNSVRPAEFKS 266
                 8************7777554488*********************9999986 PP

  == domain 4  score: 13.6 bits;  conditional E-value: 2.5e-05
   EF-hand_8  30 ilfrefDtdgdGkisfeEF 48 
                 +lfre+D dg+G ++f+EF
  KOO21562.1 356 ALFREADVDGSGEVTFDEF 374
                 79****************9 PP

  == domain 5  score: 5.3 bits;  conditional E-value: 0.0098
   EF-hand_8   2 kgkItreelrril.rilglkk.glseeevdilfrefDtdgd 40 
                 +g +t+ el+++  ++l   k  lse ++ +l   +D d++
  KOO21562.1 379 RGFVTFKELQDATrTKLRVSKaELSEGQLKALWCVLDADDS 419
                 589**********8888766677888888777777777665 PP

>> DUF4473  Domain of unknown function (DUF4473)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.0   6.6e-06     0.012       5      40 ..     157     195 ..     153     212 .. 0.81
   2 ?    2.7   0.0       0.1   1.9e+02       7      39 ..     309     343 ..     302     359 .. 0.77

  Alignments for each domain:
  == domain 1  score: 16.2 bits;  conditional E-value: 6.6e-06
     DUF4473   5 eeakaeLvaaGlsekaadglvkiaekfksefaka...kg 40 
                  e++aeL aaG+s  + ++l+ +a+ f+++ +++    g
  KOO21562.1 157 REMRAELEAAGMSLPSNEELATLAQLFYQRLEAVrirIG 195
                 699***************************999876633 PP

  == domain 2  score: 2.7 bits;  conditional E-value: 0.1
     DUF4473   7 akaeLvaaGlsekaadglvkiaekfksefaka..k 39 
                 ++aeL aaG      ++l +ia +f+++ ++a   
  KOO21562.1 309 MRAELEAAGEPLPDEAELDAIARTFYEQLEQArhR 343
                 78888888866666679999999999999998532 PP

>> SPARC_Ca_bdg  Secreted protein acidic and rich in cysteine Ca binding region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.5   0.1     0.047        84      38      76 ..      76     114 ..      22     119 .. 0.54
   2 !    7.6   0.0    0.0026       4.6      57     111 ..     205     265 ..     188     266 .. 0.77
   3 ?    4.2   0.0     0.029        52      58      81 ..     246     269 ..     237     281 .. 0.81
   4 ?   -1.0   0.0       1.2   2.2e+03      92     110 ..     356     374 ..     346     376 .. 0.90

  Alignments for each domain:
  == domain 1  score: 3.5 bits;  conditional E-value: 0.047
  SPARC_Ca_bdg  38 eelekkeeeknlkeckepvawkFsklDtnsdkvlsksEL 76 
                    + ++k + ++++  + +++  ++ lD n d ++  +E 
    KOO21562.1  76 VAVRSKLKLSSKDFSRASLKALWCALDGNDDDSVAAEEF 114
                   333344444445555556666667777777766666665 PP

  == domain 2  score: 7.6 bits;  conditional E-value: 0.0026
  SPARC_Ca_bdg  57 awkFsklDtnsdkvlsksELa.plrapl.....vklehCikpflescDadkdkkislkEwc 111
                   +  F+ lD+  d+v++  EL+ ++r++l         h  k+++ s Da++d+++  +E+ 
    KOO21562.1 205 HNLFTALDVSGDGVITFDELErAIRTQLklgpkLLSAHRLKALFCSLDANDDNSVRPAEFK 265
                   445999**************73577776222223467889999999999999999999985 PP

  == domain 3  score: 4.2 bits;  conditional E-value: 0.029
  SPARC_Ca_bdg  58 wkFsklDtnsdkvlsksELaplra 81 
                     F++lD n d+++  +E ++ r 
    KOO21562.1 246 ALFCSLDANDDNSVRPAEFKSFRD 269
                   569999999999999999998876 PP

  == domain 4  score: -1.0 bits;  conditional E-value: 1.2
  SPARC_Ca_bdg  92 pflescDadkdkkislkEw 110
                   ++++++D+d  ++++  E+
    KOO21562.1 356 ALFREADVDGSGEVTFDEF 374
                   6899************998 PP

>> EF-hand_9  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.1   0.0      0.13   2.4e+02      24      44 ..      13      33 ..       5      35 .. 0.89
   2 ?    3.4   0.0     0.053        96       3      62 ..      57     118 ..      55     120 .. 0.75
   3 ?   -3.2   0.0       6.3   1.1e+04      24      43 ..     163     182 ..     160     183 .. 0.82
   4 ?   -0.2   0.0      0.71   1.3e+03       3      49 ..     207     256 ..     205     267 .. 0.65
   5 ?   -1.1   0.0       1.4   2.5e+03      24      43 ..     313     332 ..     307     333 .. 0.85
   6 ?    3.5   0.0     0.052        94      40      63 ..     357     379 ..     351     382 .. 0.89
   7 ?   -3.8   0.0       9.6   1.7e+04      33      50 ..     403     420 ..     395     422 .. 0.74

  Alignments for each domain:
  == domain 1  score: 2.1 bits;  conditional E-value: 0.13
   EF-hand_9 24 LravtaqdpeeseLeelakel 44
                L+av++  p + +L elak++
  KOO21562.1 13 LEAVGTALPDDERLAELAKLF 33
                99***************9975 PP

  == domain 2  score: 3.4 bits;  conditional E-value: 0.053
   EF-hand_9   3 vFevcDtqktGrVpvsrlidyLravtaqdpees...eLeelakelDPdgedasvdldtflrvm 62 
                 +F+  D +  G+++  +l    r   + ++++     L  l + lD ++  +sv+ + f+r +
  KOO21562.1  57 LFSQVDEDGSGVITFDELEVAVRSKLKLSSKDFsraSLKALWCALDGNDD-DSVAAEEFKRFI 118
                 5777777777777777777777766666666666669999******7776.9*******9976 PP

  == domain 3  score: -3.2 bits;  conditional E-value: 6.3
   EF-hand_9  24 LravtaqdpeeseLeelake 43 
                 L+a +   p++ eL +la++
  KOO21562.1 163 LEAAGMSLPSNEELATLAQL 182
                 77888888999999999986 PP

  == domain 4  score: -0.2 bits;  conditional E-value: 0.71
   EF-hand_9   3 vFevcDtqktGrVpvsrlidyLravtaqdpees...eLeelakelDPdge 49 
                 +F + D+   G+++  +l    r   +  p+ +   +L  l ++lD ++ 
  KOO21562.1 207 LFTALDVSGDGVITFDELERAIRTQLKLGPKLLsahRLKALFCSLDANDD 256
                 68888888888888877777666655555543333377777777776554 PP

  == domain 5  score: -1.1 bits;  conditional E-value: 1.4
   EF-hand_9  24 LravtaqdpeeseLeelake 43 
                 L+a +++ p e+eL+  a+ 
  KOO21562.1 313 LEAAGEPLPDEAELDAIART 332
                 89999999******998875 PP

  == domain 6  score: 3.5 bits;  conditional E-value: 0.052
   EF-hand_9  40 lakelDPdgedasvdldtflrvmr 63 
                 l +e+D dg  ++v +d f+ v+r
  KOO21562.1 357 LFREADVDGS-GEVTFDEFQIVVR 379
                 6789999999.9********9988 PP

  == domain 7  score: -3.8 bits;  conditional E-value: 9.6
   EF-hand_9  33 eeseLeelakelDPdged 50 
                 +e +L  l + lD d+ d
  KOO21562.1 403 SEGQLKALWCVLDADDSD 420
                 577899999999988776 PP

>> EF-hand_4  Cytoskeletal-regulatory complex EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.8   0.1      0.13   2.3e+02      51      72 ..      58      81 ..      38      91 .. 0.69
   2 ?    0.8   0.1      0.26   4.7e+02      38      65 ..      87     114 ..      80     120 .. 0.82
   3 ?   -0.0   0.0      0.47   8.4e+02      48      70 ..     207     229 ..     197     235 .. 0.80
   4 ?    8.5   0.1     0.001       1.8      49      70 ..     358     379 ..     345     392 .. 0.85
   5 ?    3.1   0.2     0.049        87      36      59 ..     398     421 ..     385     426 .. 0.80

  Alignments for each domain:
  == domain 1  score: 1.8 bits;  conditional E-value: 0.13
   EF-hand_4 51 ladidedg..kldfeefciamrli 72
                ++ +dedg   + f+e+ +a+r  
  KOO21562.1 58 FSQVDEDGsgVITFDELEVAVRSK 81
                467777752269*****9999865 PP

  == domain 2  score: 0.8 bits;  conditional E-value: 0.26
   EF-hand_4  38 skleedklekiwdladidedgkldfeef 65 
                   ++   l+ +w   d ++d+++  eef
  KOO21562.1  87 KDFSRASLKALWCALDGNDDDSVAAEEF 114
                 45678899*************9999998 PP

  == domain 3  score: -0.0 bits;  conditional E-value: 0.47
   EF-hand_4  48 iwdladidedgkldfeefciamr 70 
                 +++  d+  dg + f+e+  a+r
  KOO21562.1 207 LFTALDVSGDGVITFDELERAIR 229
                 5666799*********9876666 PP

  == domain 4  score: 8.5 bits;  conditional E-value: 0.001
   EF-hand_4  49 wdladidedgkldfeefciamr 70 
                 +  ad+d  g++ f+ef i++r
  KOO21562.1 358 FREADVDGSGEVTFDEFQIVVR 379
                 5679***************998 PP

  == domain 5  score: 3.1 bits;  conditional E-value: 0.049
   EF-hand_4  36 knskleedklekiwdladidedgk 59 
                  +++l+e +l+ +w + d d+ + 
  KOO21562.1 398 SKAELSEGQLKALWCVLDADDSDA 421
                 45689*************998765 PP

>> Cas9_b_hairpin  CRISPR-associated endonuclease Cas9 beta-hairpin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.0   0.00025      0.44      18      42 ..      82     106 ..      70     113 .. 0.82
   2 ?   -1.9   0.0       1.7     3e+03      28      44 ..     348     364 ..     341     380 .. 0.79
   3 ?   -1.3   0.0       1.1   1.9e+03      20      39 ..     397     416 ..     383     423 .. 0.72

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00025
  Cas9_b_hairpin  18 dalsvkeidrAstpaLwcALtrlpd 42 
                      +ls k+  rAs +aLwcAL  ++d
      KOO21562.1  82 LKLSSKDFSRASLKALWCALDGNDD 106
                     4688999*************87776 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 1.7
  Cas9_b_hairpin  28 AstpaLwcALtrlpdfd 44 
                     A+  a w AL r+ d d
      KOO21562.1 348 ANGIASWYALFREADVD 364
                     55668899999999987 PP

  == domain 3  score: -1.3 bits;  conditional E-value: 1.1
  Cas9_b_hairpin  20 lsvkeidrAstpaLwcALtr 39 
                     +s +e+   + +aLwc L  
      KOO21562.1 397 VSKAELSEGQLKALWCVLDA 416
                     5566677777899**99865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (430 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       373  (0.0208043); expected 358.6 (0.02)
Passed bias filter:                      350  (0.0195214); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.52u 0.27s 00:00:00.79 Elapsed: 00:00:00.43
# Mc/sec: 3004.90
//
Query:       KOO21563.1  [L=1015]
Description: hypothetical protein Ctob_001638 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.7e-58  197.5   2.1      3e-58  196.7   2.1    1.4  1  CA_like          Putative carbonic anhydrase
    0.00047   20.4   0.2     0.0016   18.7   0.0    1.9  2  Acetyltransf_1   Acetyltransferase (GNAT) family
  ------ inclusion threshold ------
      0.045   14.4   0.0        0.1   13.3   0.0    1.6  1  Acetyltransf_3   Acetyltransferase (GNAT) domain
      0.056   13.4   0.0       0.11   12.5   0.0    1.4  1  Nucleotid_trans  Nucleotide-diphospho-sugar transferase
        9.7    6.6   5.7       0.92    9.8   0.1    2.2  3  Sigma_reg_N      Sigma factor regulator N-terminal


Domain annotation for each model (and alignments):
>> CA_like  Putative carbonic anhydrase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  196.7   2.1   8.4e-62     3e-58       3     182 .]     778     975 ..     776     975 .. 0.91

  Alignments for each domain:
  == domain 1  score: 196.7 bits;  conditional E-value: 8.4e-62
     CA_like   3 emnlvnvhfHlgaEHksegefde........lagng....dgk.......garsGyrckkaeelsekelkeydwkvcedlevGdTiEvHwvh...gacs 79 
                 ++++vnvh+HlgaEH s g++d+        +   +      +       g+r G rc++++ + +k++++++w++c++++vG+T+EvHw+h    ac+
  KOO21563.1 778 GLCPVNVHWHLGAEHLSVGQYDRygtgpnssS---SgsgsG-SygrqlaaGERLGNRCHHYRPNVSKFTTPFNWRFCTGMQVGETYEVHWPHsaaDACG 872
                 79*********************776665442...033340.244455569*****************************************99889** PP

     CA_like  80 taqqeqgpfldgvls........eadanpqlrVeaqvfvvvndekaldfdeltkmekkdglkqalaipsetgkpvqYtGStTGpsynnekcsplq.vtW 169
                 t++q+q+pf+dgv++        + ++ ++++V++q+fvvvnde++++++ +++m ++ ++  ++a+         YtGStTG+s+nn+ cs+++ +tW
  KOO21563.1 873 TQWQMQSPFYDGVFCrdgiitiaPLNTYQTIGVQSQTFVVVNDEAYYQPNLFQGMLTHGQHGLDMAM---------YTGSTTGTSRNNAVCSRYTpITW 962
                 ****************99999999999******************************9999999987.........*********************** PP

     CA_like 170 svdrkchkvsiss 182
                 +vdrkch+vs+ss
  KOO21563.1 963 QVDRKCHLVSASS 975
                 ***********97 PP

>> Acetyltransf_1  Acetyltransferase (GNAT) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.1         1   3.7e+03      80     113 ..      53      81 ..      46      83 .. 0.85
   2 !   18.7   0.0   4.4e-07    0.0016      62     117 .]     189     246 ..     162     246 .. 0.79

  Alignments for each domain:
  == domain 1  score: -1.9 bits;  conditional E-value: 1
                     HHHHHHHHHHHHTTESEEEEEEETTEHHHHHHHH CS
  Acetyltransf_1  80 aLlealeerareegikkivlaveedndaairlYe 113
                     +L++++ ++a + gi+ i +       +++r+Y 
      KOO21563.1  53 MLMREADREAVNGGIYLIRC-----SARMRRFYA 81 
                     699999*******9998888.....788899994 PP

  == domain 2  score: 18.7 bits;  conditional E-value: 4.4e-07
                     EEEEEEESGGGTTSSHHHHHHHHHHHHHHHT..TESEEEEEEETTEHHHHHHHHHTTE CS
  Acetyltransf_1  62 yieslaVspeyrgkGlGsaLlealeeraree..gikkivlaveedndaairlYeklGF 117
                     + +++ + + +r++ lGsa l al++       +++  v+ v e n +a+r++e +GF
      KOO21563.1 189 IEIEIEIERLHRRQQLGSAALAALLDATAAAlpEVRCAVVRVPEANGGARRFFEAVGF 246
                     556999*******************84444445555555688888********99**9 PP

>> Acetyltransf_3  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.0   2.8e-05       0.1      79     137 ..     187     246 ..     125     247 .. 0.87

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 2.8e-05
  Acetyltransf_3  79 eeaelgymlapsfwgkGyateavralleyaf.eelglerlvavidkeNeaSirvleklGf 137
                      e+e+++ + + ++++ +++ a++all++   + ++++  v+++ + N + +r +e +Gf
      KOO21563.1 187 LEIEIEIEIERLHRRQQLGSAALAALLDATAaALPEVRCAVVRVPEANGGARRFFEAVGF 246
                     238999999999*****************9735558888********************9 PP

>> Nucleotid_trans  Nucleotide-diphospho-sugar transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0     3e-05      0.11      70     154 ..      22     106 ..      18     135 .. 0.76

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 3e-05
  Nucleotid_trans  70 llsDvDvvWlrnpfpll.......kyedaDvlvssDsldgttadelknliNsGfffvrateatkallkkwaeelase.sglwDqdvfnlllre 154
                      + sD+D+ ++   + ++       ++e+ D++++            ++ +N+G++ +r + +  +++ ++ ++ +++  +l+Dq  +n +l  
       KOO21563.1  22 IKSDADIQFFAPCTAAIrrwcvrmRSEGLDLMLMREAD--------REAVNGGIYLIRCSARMRRFYAELIRRSQTNpGALHDQEHLNAMLGL 106
                      66777777777777777555554444666666665533........3447***************************55567*******9975 PP

>> Sigma_reg_N  Sigma factor regulator N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   0.1   0.00026      0.92       6      60 ..     317     377 ..     314     387 .. 0.71
   2 ?   -3.0   0.2       2.5   9.1e+03      24      34 ..     601     611 ..     592     621 .. 0.52
   3 ?   -4.4   0.1         5   1.8e+04      22      33 ..     648     659 ..     645     663 .. 0.56

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.00026
  Sigma_reg_N   6 kakrksilrivlislivlllifvil.vvtllyl.....aekegnklrevlelaveitsPNv 60 
                  +ak +  l ++ +++i+++++f+   v++l+ l     ++++ +++ ++++ +v++t+P  
   KOO21563.1 317 RAKATFGLAVTAVVFIIIVAVFMCYvVSSLNSLyskvtSSEKVDETPSTIPAVVSYTKPKA 377
                  56666666666666666666666554444444466889999999***************75 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 2.5
  Sigma_reg_N  24 llifvilvvtl 34 
                  +li+++l +++
   KOO21563.1 601 FLIVILLAIGI 611
                  44444442222 PP

  == domain 3  score: -4.4 bits;  conditional E-value: 5
  Sigma_reg_N  22 vlllifvilvvt 33 
                  ++l++fv l++t
   KOO21563.1 648 SVLMFFVTLFIT 659
                  345555555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1015 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       956  (0.0533214); expected 358.6 (0.02)
Passed bias filter:                      574  (0.0320152); expected 358.6 (0.02)
Passed Vit filter:                        66  (0.00368119); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.81u 0.30s 00:00:01.11 Elapsed: 00:00:00.46
# Mc/sec: 6575.77
//
Query:       KOO21564.1  [L=99]
Description: hypothetical protein Ctob_001639 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (99 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       452  (0.0252106); expected 358.6 (0.02)
Passed bias filter:                      303  (0.0169); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.23s 00:00:00.60 Elapsed: 00:00:00.40
# Mc/sec: 748.15
//
Query:       KOO21565.1  [L=275]
Description: hypothetical protein Ctob_001636 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.4e-06   28.6   0.0    2.5e-06   27.8   0.0    1.4  1  PBP       Phosphatidylethanolamine-binding protein


Domain annotation for each model (and alignments):
>> PBP  Phosphatidylethanolamine-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.8   0.0   1.4e-10   2.5e-06      12     113 ..      80     199 ..      58     215 .. 0.69

  Alignments for each domain:
  == domain 1  score: 27.8 bits;  conditional E-value: 1.4e-10
                 S-EEEEE..S--TTSSEEEEEEEETTSCCTCT.T.........EEEEEEEEEETTSSEE-TTCEE-B-TTSSCCCCS---B--STTS........EEEE CS
         PBP  12 sPplsws..dvpegtksyalvviDpDapkvse.t.........flHwvvtnipasvtslpegavqgknslgeesesgYlgpcPpkgd.....gk.HrYv 92 
                  P ++w+  ++ ++++ ya+++  pD pk+++           +lHw + n   s+++         n+ +   +++Y gp+  +g       + HrY+
  KOO21565.1  80 RPLVEWEptKFGAHQDRYAVMLLAPDEPKRAAgDgsadgekgpILHWFALNCAQSTSK---------NDEKCYHSIPYNGPRSTDGIlndnpAMdHRYI 169
                 38889998888889*************988877357899999**********955555.........333333337******9887555544457**** PP

                 EEEEEESSSG..........--BGSS-SHHH CS
         PBP  93 fllyaldvea..........ldlkagftrae 113
                 f l+  +v+           l  +++f+ + 
  KOO21565.1 170 FILFR-QVKPppgsviqdylLTTRENFNLRG 199
                 ****5.3333345555444322444444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (275 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       247  (0.0137766); expected 358.6 (0.02)
Passed bias filter:                      220  (0.0122706); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.27s 00:00:00.67 Elapsed: 00:00:00.41
# Mc/sec: 2025.26
//
Query:       KOO21566.1  [L=607]
Description: delta-6 fatty acid desaturase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    5.9e-19   68.9  12.5    8.5e-19   68.4  12.5    1.2  1  FA_desaturase  Fatty acid desaturase
    9.1e-07   28.9   0.0    2.1e-06   27.8   0.0    1.6  1  Cyt-b5         Cytochrome b5-like Heme/Steroid binding domain
  ------ inclusion threshold ------
       0.47   11.0   7.0        3.3    8.2   0.1    3.3  3  DinB_2         DinB superfamily


Domain annotation for each model (and alignments):
>> FA_desaturase  Fatty acid desaturase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   68.4  12.5   1.4e-22   8.5e-19       3     253 ..     132     404 ..     130     405 .. 0.69

  Alignments for each domain:
  == domain 1  score: 68.4 bits;  conditional E-value: 1.4e-22
  FA_desaturase   3 wlallla...lllglfllgitg.slaHeaaHg..alfkkrklnrwlndllgallglplgisysawrisHlrHHaytngpdeDpdlaplal...... 86 
                    w++++     l++gl+  g +    aH++ H+  a+       r l +l+    +l +    +aw  +H+ HHa+tn+ ++Dpd++   +      
     KOO21566.1 132 WPGAVSLisaLAYGLL-TGRQTwTHAHNGVHNpnAIP------RPLKRLM----ALDFVGVVDAWMMEHHAHHAHTNDAAQDPDVRWWMPlfsyad 216
                    5555533323666776.44444499******632333......4443333....44444567889999988****999999999963333444555 PP

  FA_desaturase  87 ......srfeglfryllrlllgllvlgwllalvlglwlrrlarrrapsksrrrkwrllawlllllawlglwlalllllglalllwlvplllllfll 176
                          s++ +lf+ l+  ll +++l           +  l + + ++k+r++ +++la++ l++++ +++l++ +++  ++++ ++ + ++++++
     KOO21566.1 217 ihasggSPRTALFAALAYPLLVPVML----------VRSLLHAISFDPKGRATVAYVLAVAPLRFGLDIALLGTRYFPLALGAATAYIVGTFVATH 302
                    54433333333333222222222222..........566667777777777766666666666666544444444443333335555555555555 PP

  FA_desaturase 177 alvlnyveHyg.........................gdwgerqvetsasirsaswllnlltgnlnyHieHHlfPgvpwyrLpelhrrlrellpehg 247
                    +l +ny+  +                          + w + q++ ++++   +  ++ ++g++n HieHHlfP v+ + L  + + +re+++e g
     KOO21566.1 303 QLASNYAPAARkmattameeeedeatrpataepppvECWMTKQLRATNNVLAGHSAWSAFCGGINNHIEHHLFPMVSSQALSHVVPVVREFARERG 398
                    666688888889999999999*************************************************************************** PP

  FA_desaturase 248 lpyrsr 253
                    lpy+s+
     KOO21566.1 399 LPYQSF 404
                    ***975 PP

>> Cyt-b5  Cytochrome b5-like Heme/Steroid binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.8   0.0   3.4e-10   2.1e-06      13      65 ..      10      60 ..       5     108 .. 0.89

  Alignments for each domain:
  == domain 1  score: 27.8 bits;  conditional E-value: 3.4e-10
                EEEEEETTEEEECTTTCCCSTTCSHHHHTTTTSBBHHHHHHTTGGCHHHHHHH CS
      Cyt-b5 13 dlwvairgkVYDvskflskhpGgesailkyaGkDateafksvvhsekdaekll 65
                ++ v i+g  YD+s+f+  hpGg ++i ++ G+D++ +f s ++++ +a++ l
  KOO21566.1 10 PVHVHIDGAWYDLSSFA--HPGGTDLIARHNGTDISYLFYSNHFDPLEAARRL 60
                77899************..************************9999885544 PP

>> DinB_2  DinB superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   1.3       1.7     1e+04     115     126 ..     184     195 ..     156     196 .. 0.82
   2 ?    8.2   0.1   0.00055       3.3      36     102 ..     417     500 ..     416     510 .. 0.79
   3 ?    5.4   0.0    0.0042        25      65      89 ..     579     603 ..     534     606 .. 0.80

  Alignments for each domain:
  == domain 1  score: -3.1 bits;  conditional E-value: 1.7
      DinB_2 115 lfvlqHeqhHle 126
                 +++ +H +hH +
  KOO21566.1 184 AWMMEHHAHHAH 195
                 689999999987 PP

  == domain 2  score: 8.2 bits;  conditional E-value: 0.00055
      DinB_2  36 laHlgnveelllerlr................geeaprpgldpltppsaaealaylaevrarllallealtdadldrpltap.h 102
                 l+Hlgn+ +    ++                  +++p++    ++p+++ae la l++  ar+ +ll+a + ++  + l+ p +
  KOO21566.1 417 LWHLGNSLRPTRTHAAipsiseydavqykktkTAAPPPSDAMAGEPLAPAEGLALLNSGLARAAQLLDAGDLEAVRAELHEPaF 500
                 79999999999988888999998888888774333334555556669**********************999888888888843 PP

  == domain 3  score: 5.4 bits;  conditional E-value: 0.0042
      DinB_2  65 ppsaaealaylaevrarllalleal 89 
                 + +++e +a laevr+++  +l++l
  KOO21566.1 579 KVDLEEGRALLAEVREQVEVVLRDL 603
                 3799****************99998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (607 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       461  (0.0257125); expected 358.6 (0.02)
Passed bias filter:                      361  (0.020135); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.56u 0.25s 00:00:00.81 Elapsed: 00:00:00.42
# Mc/sec: 4372.20
//
Query:       KOO21567.1  [L=366]
Description: protein os-9 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.4e-15   56.8   0.0    4.1e-15   56.1   0.0    1.4  1  YccV-like  Hemimethylated DNA-binding protein YccV like
      3e-08   34.6   9.0      1e-07   32.9   8.9    1.7  1  PRKCSH     Glucosidase II beta subunit-like protein
    4.2e-06   26.5   1.2    6.5e-06   25.9   1.2    1.2  1  PRKCSH_1   Glucosidase II beta subunit-like protein


Domain annotation for each model (and alignments):
>> YccV-like  Hemimethylated DNA-binding protein YccV like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.1   0.0   6.9e-19   4.1e-15      30      96 ..     236     302 ..     230     304 .. 0.96

  Alignments for each domain:
  == domain 1  score: 56.1 bits;  conditional E-value: 6.9e-19
   YccV-like  30 seewiekigveelsegrnqpfYhvlvdtedsekvsvrYvaeenlelikssepiehpeigkyFkrfdg 96 
                 se wi+++++++l++grnqpfYhvl+d++d++   v+Yva+e l+l++++ep++hp +++yF +fd+
  KOO21567.1 236 SEAWIRANAIDTLKHGRNQPFYHVLADSRDRPGAPVNYVAQELLDLDTPPEPLQHPLLEQYFASFDQ 302
                 799**************************************************************97 PP

>> PRKCSH  Glucosidase II beta subunit-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.9   8.9   1.7e-11     1e-07       2      41 ..      98     142 ..      97     162 .. 0.89

  Alignments for each domain:
  == domain 1  score: 32.9 bits;  conditional E-value: 1.7e-11
                 -EEEEEETTEEEEEETTTEEEEE-E.....ETTEE-S--EEEEEE CS
      PRKCSH   2 kCvsskegwwtYelCygkkvrQfhe.....pekekgksevvLGrf 41 
                 +C+++ egwwtYe+Cy +  rQ+h+     + ++k +++++LG  
  KOO21567.1  98 TCFYRLEGWWTYEFCYRQSFRQYHQengkdKAENKITQDYTLGEC 142
                 7***************************99999999*******65 PP

>> PRKCSH_1  Glucosidase II beta subunit-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.9   1.2   1.1e-09   6.5e-06      38     142 ..      94     209 ..      89     214 .. 0.80

  Alignments for each domain:
  == domain 1  score: 25.9 bits;  conditional E-value: 1.1e-09
                 TTTT-EEEEEETTEEEEEETTSEEEETTEEEEEEEEEE.......TTEEEEEE-SB-.TTSSC-EEEEEEEE..-SS-EEEEEEEEETTEEEEEEEEGG CS
    PRKCSH_1  38 alegrevkekigdYeYkvvllesvvqddisiGefkkqe.......gnklkyekGakC.WnGPvRsaiveveC..GdenelvsvseaekCeYllkvkspa 126
                  l+ +++ +  g ++Y++++ +s  q +   G+ k+ +         +  y +G++C   G  R+  v+v+C  G+  ++ sv e   C Y +   +p 
  KOO21567.1  94 QLKNTCFYRLEGWWTYEFCYRQSFRQYHQENGKDKAENkitqdytLGECSYGNGTHCdITGRPRETEVRVRCsgGEPSHIASVEEVSTCRYVVYFATPL 192
                 57888999999999************888888766555777755555679*******558************878899********************* PP

                 G-.-XXXXXXXXXXXXX CS
    PRKCSH_1 127 aC.snvllkkslaeees 142
                  C ++ +  ++ ++++s
  KOO21567.1 193 LCkHPAFAAEENSKDDS 209
                 **334444444444454 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (366 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       337  (0.0187964); expected 358.6 (0.02)
Passed bias filter:                      308  (0.0171789); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.46u 0.24s 00:00:00.70 Elapsed: 00:00:00.40
# Mc/sec: 2728.39
//
Query:       KOO21568.1  [L=237]
Description: hypothetical protein Ctob_001650 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.7e-07   29.3   0.2    1.7e-06   27.8   0.2    1.8  1  UBA       UBA/TS-N domain
  ------ inclusion threshold ------
      0.052   13.7   3.4        4.1    7.8   0.0    3.8  3  TPR_2     Tetratricopeptide repeat
       0.24   11.9   0.1       0.24   11.9   0.1    3.6  4  TPR_19    Tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> UBA  UBA/TS-N domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.8   0.2   2.8e-10   1.7e-06       9      37 .]     188     216 ..     187     216 .. 0.97

  Alignments for each domain:
  == domain 1  score: 27.8 bits;  conditional E-value: 2.8e-10
                 HHHTTS-HHHHHHHHHHTTTSHHHHHHHH CS
         UBA   9 LveMGFdreevveALratgnNeErAveyL 37 
                 L +MGFdre vv A  a++++ + Av++L
  KOO21568.1 188 LIDMGFDREKVVAAAAAADGDFQKAVNIL 216
                 78*************************98 PP

>> TPR_2  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.8   0.0   0.00069       4.1      16      34 .]       3      21 ..       1      21 [. 0.92
   2 ?    2.6   0.2      0.03   1.8e+02       1      28 [.      29      56 ..      29      60 .. 0.89
   3 ?    1.5   0.1     0.071   4.3e+02       8      21 ..     200     213 ..     199     216 .. 0.82

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 0.00069
       TPR_2 16 dyeeAleafekAleldPnn 34
                d++ A++af++A + +P++
  KOO21568.1  3 DFAGARDAFDEAYRMCPRD 21
                899*************986 PP

  == domain 2  score: 2.6 bits;  conditional E-value: 0.03
       TPR_2  1 aealynlGlayyklgdyeeAleafekAl 28
                a +l+  G+ ++k++d   A++ +++ l
  KOO21568.1 29 AICLFSAGNMALKANDILGAKARYDELL 56
                5689999**************9999987 PP

  == domain 3  score: 1.5 bits;  conditional E-value: 0.071
       TPR_2   8 GlayyklgdyeeAl 21 
                 + a+++ gd+++A+
  KOO21568.1 200 AAAAAADGDFQKAV 213
                 56888999999997 PP

>> TPR_19  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.1     4e-05      0.24       6      41 ..       3      38 ..       1      55 [. 0.95
   2 ?   -1.4   1.8       0.6   3.6e+03       2      29 ..      40      67 ..      39      95 .. 0.55
   3 ?   -1.0   0.2      0.45   2.7e+03       5      23 ..     159     177 ..     156     184 .. 0.67
   4 ?    1.0   0.2      0.11   6.4e+02       2      14 ..     204     216 ..     200     223 .. 0.77

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 4e-05
      TPR_19  6 dyaeAlalleqalqedpknaearllLAeallalgql 41
                d+a A +++ +a+   p ++e + + A++l+++g+ 
  KOO21568.1  3 DFAGARDAFDEAYRMCPRDGEFAKQSAICLFSAGNM 38
                99********************************96 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 0.6
      TPR_19  2 laegdyaeAlalleqalqedpknaearl 29
                l+++d   A a++ ++l  +  ++++r+
  KOO21568.1 40 LKANDILGAKARYDELLGLASLDGALRA 67
                5566666666666666655444444443 PP

  == domain 3  score: -1.0 bits;  conditional E-value: 0.45
      TPR_19   5 gdyaeAlalleqalqedpk 23 
                 g  ++Al+  + a++++ k
  KOO21568.1 159 GSAEAALEVAAGAFAKAGK 177
                 6677777777777766655 PP

  == domain 4  score: 1.0 bits;  conditional E-value: 0.11
      TPR_19   2 laegdyaeAlall 14 
                  a+gd++ A+++l
  KOO21568.1 204 AADGDFQKAVNIL 216
                 5778888887665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (237 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       502  (0.0279993); expected 358.6 (0.02)
Passed bias filter:                      250  (0.0139439); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.40u 0.23s 00:00:00.63 Elapsed: 00:00:00.37
# Mc/sec: 1924.65
//
Query:       KOO21569.1  [L=174]
Description: hypothetical protein Ctob_001648 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    8.9e-07   28.8   0.0    1.3e-06   28.3   0.0    1.2  1  DUF952    Protein of unknown function (DUF952)


Domain annotation for each model (and alignments):
>> DUF952  Protein of unknown function (DUF952)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.3   0.0   7.2e-11   1.3e-06      23      82 ..      39     106 ..      19     112 .. 0.82

  Alignments for each domain:
  == domain 1  score: 28.3 bits;  conditional E-value: 7.2e-11
                 HHHTSEE-EEHHHHHHHHHHHSTT--SEEEEEEESGGGTTT....EEEEEG...GGG.SEEEEESS-E CS
      DUF952  23 akdGFIHlStaeqvpetaarffagqedlvllkidasklaaa....vkweas...egg.elfPHlYgpl 82 
                  ++ FI l t++q+++ aa+ fag++d +ll ++ ++++++    +k+ea+    gg   + H+Yg +
  KOO21569.1  39 GTKNFITLLTGDQLAKAAATSFAGKTDTMLLSFKVESMREEadlkIKYEAAeseAGGsGEYVHVYGGF 106
                 4678**********************************9988899****99887666679******65 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (174 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       291  (0.0162307); expected 358.6 (0.02)
Passed bias filter:                      258  (0.0143901); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.22s 00:00:00.59 Elapsed: 00:00:00.36
# Mc/sec: 1435.58
//
Query:       KOO21570.1  [L=309]
Description: kif3a protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
      1e-99  333.7   0.1    1.2e-99  333.4   0.1    1.0  1  Kinesin      Kinesin motor domain
    2.9e-21   76.0   0.0    5.3e-21   75.1   0.0    1.5  1  Microtub_bd  Microtubule binding


Domain annotation for each model (and alignments):
>> Kinesin  Kinesin motor domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  333.4   0.1  1.3e-103   1.2e-99      66     333 .]       2     266 ..       1     266 [. 0.97

  Alignments for each domain:
  == domain 1  score: 333.4 bits;  conditional E-value: 1.3e-103
                 HHHHHHTTSEEEEEEEESTTSSHHHHHTBCTTTSBSHHHHHHHHHHHHHHHCTTTHEEEEEEEEEEEEEETTEEEETTSTTTTSTSSEBEEEECTTSC. CS
     Kinesin  66 lvesvleGynatifaYGqtgsGKTyTmegkeeeeeGiipraleelFesikkekeekekefsvkvsylEiYneeiyDLLeskkskkkkklkiredskkg. 163
                 ++++vl+Gyn+++faYGqtgsGKTyTm+g+  + +G+ip+ ++elFe+i+++ e   ke++v  ++ EiYne++ DLL+   +++ ++l i+ed+  g 
  KOO21570.1   2 VLTKVLDGYNGCVFAYGQTGSGKTYTMQGT-AATPGVIPQLCDELFERISRMAEV--KEVRVYATMCEIYNERLNDLLTRGADDNCRDLVIKEDKAAGg 97 
                 5789*************************9.999***************998877..99**********************989989********9988 PP

                 .CEEETTS--EEESSHHHHHHHHHHHHHHHTSTTSSCTSHHCCSEEEEEEEEEEEETTTTTCEEEEEEEEEEEEEEECCCHHHHSSTCHHHHHHHHHHH CS
     Kinesin 164 .evyvkgltevevksaeevlellekgeknrkvaetklneeSSRSHavftitleqknlkeeteekvkisklnLvDLAGsErasktgaaegerlkEaaniN 261
                   ++v+gl+e++v+s+++v++l+  g+++r+v+ t++ne+SSRSH+v+t+++e  ++ + ++ + ++skl+L+DLAGsEr++ tg a+gerlkE+a+iN
  KOO21570.1  98 rGIFVDGLSEHHVESSSDVQHLIGDGQARRAVGRTDMNEHSSRSHSVVTLRIETCDVGDLERISATSSKLHLIDLAGSERQKGTG-ATGERLKEGAQIN 195
                 88*******************************************************99999889********************.589********** PP

                 HHHHHHHHHHHHHHHTCCTSTSCGGGSHHHHHTGGGHSSSSEEEEEEEE-TBGGGHHHHHHHHHHHHHHCTT CS
     Kinesin 262 kSLlaLgrvisaLaekkkskhipYRdSkLTrlLqdsLgGnsktlmivtvspssenleetlstlkfaerakei 333
                  SL+aLg+visaL+ek ++ h+pYRdSkLTrlLqdsLgGns t+m+++ sp++ n eetls+l+faerak+i
  KOO21570.1 196 LSLTALGNVISALTEK-NRGHVPYRDSKLTRLLQDSLGGNSVTVMLCNASPAAINGEETLSALRFAERAKKI 266
                 ****************.*****************************************************97 PP

>> Microtub_bd  Microtubule binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   75.1   0.0   5.9e-25   5.3e-21      75     149 .]       3      76 ..       1      76 [. 0.96

  Alignments for each domain:
  == domain 1  score: 75.1 bits;  conditional E-value: 5.9e-25
                  HHHHHTT--EEEEEEES................ST-HCHHHHHHHHHHCCTSCCCCEEEEEEEEEEESS-EEETT CS
  Microtub_bd  75 vqsaldgynvcifaygqTGsGKtyTmegeeeeagmipraveeifetiselkekgwkyeielqfveiynekvqDlL 149
                  ++ +ldgyn c+faygqTGsGKtyTm+g+ +++g+ip++ +e+fe is+   + +++++++++ eiyne+++DlL
   KOO21570.1   3 LTKVLDGYNGCVFAYGQTGSGKTYTMQGTAATPGVIPQLCDELFERISRM-AEVKEVRVYATMCEIYNERLNDLL 76 
                  57789********************************************9.6799*******************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (309 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       769  (0.0428914); expected 358.6 (0.02)
Passed bias filter:                      582  (0.0324614); expected 358.6 (0.02)
Passed Vit filter:                        64  (0.00356964); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.45u 0.27s 00:00:00.72 Elapsed: 00:00:00.40
# Mc/sec: 2294.33
//
Query:       KOO21571.1  [L=413]
Description: septin-2-like protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    5.3e-51  173.5   0.0      1e-50  172.6   0.0    1.4  1  Septin       Septin
    9.5e-05   22.5   0.0    0.00015   21.8   0.0    1.4  1  MMR_HSR1     50S ribosome-binding GTPase
     0.0038   17.2   0.0      0.011   15.7   0.0    1.8  2  TsaE         Threonylcarbamoyl adenosine biosynthesis protein
     0.0065   16.0   0.0      0.011   15.2   0.0    1.2  1  Pox_A32      Poxvirus A32 protein
     0.0068   16.7   0.0      0.023   15.0   0.0    1.9  2  AAA_22       AAA domain
     0.0073   16.7   0.0      0.023   15.1   0.0    1.8  2  AAA_16       AAA ATPase domain
  ------ inclusion threshold ------
       0.01   15.5   0.0      0.018   14.8   0.0    1.4  1  AAA_24       AAA domain
      0.069   12.9   0.0       0.18   11.6   0.0    1.7  1  PduV-EutP    Ethanolamine utilisation - propanediol utilisati
      0.073   13.2   0.1       0.32   11.1   0.1    2.0  2  AAA_33       AAA domain
      0.088   13.3   0.0       0.17   12.4   0.0    1.5  1  ABC_tran     ABC transporter
      0.094   12.2   0.0       0.17   11.4   0.0    1.4  1  AAA_7        P-loop containing dynein motor region
        0.1   12.8   0.0       0.21   11.8   0.0    1.5  1  Roc          Ras of Complex, Roc, domain of DAPkinase
       0.12   12.3   0.0       0.62    9.9   0.0    2.0  2  RsgA_GTPase  RsgA GTPase
       0.15   12.0   0.0       0.28   11.2   0.0    1.4  1  AAA_5        AAA domain (dynein-related subfamily)
       0.23   10.6   0.0       0.41    9.7   0.0    1.3  1  G-alpha      G-protein alpha subunit


Domain annotation for each model (and alignments):
>> Septin  Septin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  172.6   0.0   8.4e-54     1e-50       2     266 ..      23     306 ..      22     322 .. 0.86

  Alignments for each domain:
  == domain 1  score: 172.6 bits;  conditional E-value: 8.4e-54
                 EEEEEEEEEEBTTSSCCCCCCTTSSSS----...--------------S-EEEEEEEEETTCEEEEEEEE---BSSSSSHHCCCHHHHHHHHHHHHHH. CS
      Septin   2 gieftlmvvGesglGkttlintlfetdliee...ekleeasekkkktveikkkkvvieedgvklnltviDtpgfGdavdnskswepiveyideqfeey. 96 
                 gi+f +m+vGesglGktt+ ++l++  + ++        ++  +++t+eik+  +++++dg+ +++tv+D pg+Gd+vd +   + i+ey+++++ +  
  KOO21571.1  23 GINFRIMLVGESGLGKTTFTRALLRPFVPDDmlhGAAYVPATLTARTTEIKEIVHKVDNDGFPVEITVVDCPGYGDQVDSTPWINSIIEYVQQRYMDHy 121
                 99*********************8876666644455666778899************************************************986541 PP

                 ..HHHCTSS--...SS-----EEEEEEEE-TTSSSS-HHHHHHHHHHTTTS-EEEEESSGGGS-HHHHHHHHHHHHHHHHHTT--------SSSS-... CS
      Septin  97 ..lreesklkR...kkivDkRvHaclyfisPtghglkpldvelmkklsekvnliPviaKaDtltkeElkefKkkireeleeeeikiyklpdeeede... 187
                   l++    +    +   D  vH+clyfi+  +h+lk +d+e+m++l+ ++nl+P+iaK+Dt+t  E ++f++ i +el+++ +ki++l d+       
  KOO21571.1 122 dmLSAPPSQNApalALQRDGLVHVCLYFIA--AHRLKGVDLEFMRRLEPHINLVPIIAKSDTMTLAERDAFRRLILSELRASGVKIFQLSDTAVAAgpl 218
                 225543333331236678999********6..8*******************************************************999999999** PP

                 ..................SCCH.HHHHHHHHHC-SEEB-SSSSEEEESSSEEEEEEETTEEEETT-TTT-SCCHHHHHHHHHCHHHHHHHHHHTHHHH CS
      Septin 188 ..................deea.kelseklkeslPfaivgsneliekkgkkvrgRkypWGvvevenekhsdFlkLrklllkthledLkevteellYet 266
                                   d+++ + ls++ ++  Pfa+++s++           R ypWG+  ve+++hsd  +Lr++l+++ +   k +t e lYet
  KOO21571.1 219 tpltqgavgleadaavsaDAKVgRVLSRSTTQPPPFAVCSSEDG---------TRIYPWGTCCVEDPQHSDLSTLRSMLFASSMVAAKRRTLE-LYET 306
                 ************9988774444145678889999******9864.........589***********************************99.6775 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.8   0.0   1.3e-07   0.00015       1      62 [.      27     103 ..      27     173 .. 0.67

  Alignments for each domain:
  == domain 1  score: 21.8 bits;  conditional E-value: 1.3e-07
                 EEEEEESTTSSHHHHHHHHHT.........STEEESSSTTSSSSEEEEEEE.......ETT..EEEEEEECGGCSS..HHHH CS
    MMR_HSR1   1 evaivGrpNvGKStLinaltg.........ekaivsdkpgtTrdinegrvk.......lkg..keielvDtpGlie..gase 62 
                 ++++vG +  GK+t+ +al++              +++  +T++ ++ ++k        +g   ei++vD+pG +    +s+
  KOO21571.1  27 RIMLVGESGLGKTTFTRALLRpfvpddmlhG----AAYVPATLTARTTEIKeivhkvdNDGfpVEITVVDCPG-YGdqVDST 103
                 699*****************87776544432....3333333333333333222222244444669*******.74222233 PP

>> TsaE  Threonylcarbamoyl adenosine biosynthesis protein TsaE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.0   9.1e-06     0.011       8      42 ..       9      48 ..       2      61 .. 0.74
   2 ?   -3.1   0.0       6.1   7.3e+03      63      82 ..     139     157 ..     134     173 .. 0.66

  Alignments for each domain:
  == domain 1  score: 15.7 bits;  conditional E-value: 9.1e-06
                HHHHHHHHHCH...TEE...EEEEESTTSSHHHHHHHHHHH CS
        TsaE  8 ealgkklakal...gdv...ilLeGdLGaGKTtlvrglaka 42
                 +l ++l ++    g +   i+L G+ G GKTt++r+l++ 
  KOO21571.1  9 LQLSAQLNAEWqrsG-InfrIMLVGESGLGKTTFTRALLRP 48
                556666655554431.1456*****************9986 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 6.1
                 .SSEEEEE-TT-SSTHHHHH CS
        TsaE  63 keglyHfDlYRledeeelee 82 
                 ++gl+H+ lY ++ +++l+ 
  KOO21571.1 139 RDGLVHVCLYFIA-AHRLKG 157
                 4559999999885.444444 PP

>> Pox_A32  Poxvirus A32 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.0     9e-06     0.011      13      38 ..      25      50 ..      18      53 .. 0.92

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 9e-06
     Pox_A32 13 pFrlalvGgsGsGktvyLlsLlrtlv 38
                +Fr+ lvG+sG Gkt++ ++Llr +v
  KOO21571.1 25 NFRIMLVGESGLGKTTFTRALLRPFV 50
                7*********************9887 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.0   1.9e-05     0.023       8      60 ..      28      79 ..      27     118 .. 0.82
   2 ?   -2.7   0.0       5.5   6.6e+03      45      85 ..     273     310 ..     268     329 .. 0.67

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 1.9e-05
      AAA_22  8 lvvtGesGtGKTtllrrlleqldeeakaee..erpevvfvtlpsst.sskdllrel 60
                ++++GesG GKTt  r ll+ ++     ++  +++ +v  tl++ t + k++ +++
  KOO21571.1 28 IMLVGESGLGKTTFTRALLRPFVP----DDmlHGAAYVPATLTARTtEIKEIVHKV 79
                689*****************9952....2245777777777777776666666665 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 5.5
      AAA_22  45 vtlpsstsskdllrellralglelkaerlsseellealeqa 85 
                 v+ p+ +++++l+++l+    + +k+   ++ el+e+ + a
  KOO21571.1 273 VEDPQHSDLSTLRSMLFASSMVAAKR---RTLELYETSYAA 310
                 66677777888888888877777777...555555544444 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.0   1.9e-05     0.023      26      52 ..      27      57 ..       4      92 .. 0.74
   2 ?   -3.1   0.0       7.5   8.9e+03      96     107 ..     189     209 ..     170     256 .. 0.48

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 1.9e-05
      AAA_16 26 lvllsGesGvGKsslvrellralekd....g 52
                 ++l+GesG GK++  r+llr++  d    g
  KOO21571.1 27 RIMLVGESGLGKTTFTRALLRPFVPDdmlhG 57
                4789*****************9999977764 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 7.5
      AAA_16  96 awrekleeala.........a 107
                 a+r+ ++++l+         +
  KOO21571.1 189 AFRRLILSELRasgvkifqlS 209
                 333333333333333333330 PP

>> AAA_24  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.8   0.0   1.5e-05     0.018       3      28 ..      26      50 ..      24     117 .. 0.83

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 1.5e-05
      AAA_24  3 lkiliyGpsgiGKTtlakelgpkplf 28
                 +i+++G+sg GKTt+ + l  +p++
  KOO21571.1 26 FRIMLVGESGLGKTTFTRAL-LRPFV 50
                58***************999.66655 PP

>> PduV-EutP  Ethanolamine utilisation - propanediol utilisation
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   0.00015      0.18       3      21 ..      27      45 ..      25      49 .. 0.93

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 0.00015
   PduV-EutP  3 killiGkvgsGKttLtqal 21
                +i+l+G++g GKtt t+al
  KOO21571.1 27 RIMLVGESGLGKTTFTRAL 45
                8***************998 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.1   0.00027      0.32       2      22 ..      28      48 ..      28      60 .. 0.92
   2 ?   -2.3   0.0       3.8   4.6e+03      76     107 ..      62      94 ..      55      95 .. 0.79

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00027
      AAA_33  2 vllvGlpGsGKstlaerllkk 22
                ++lvG +G GK+t+ + ll++
  KOO21571.1 28 IMLVGESGLGKTTFTRALLRP 48
                79***************9975 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 3.8
      AAA_33  76 datnlsr.rerarflklarrlgvpvrivvvetd 107
                  at++ r  e +++++ + + g+pv+i vv+++
  KOO21571.1  62 PATLTARtTEIKEIVHKVDNDGFPVEITVVDCP 94 
                 567777767889999999999999999999886 PP

>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   0.00014      0.17      13      35 ..      27      49 ..      25     117 .. 0.91

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 0.00014
                EEEEEESTTSSHHHHHHHHTTSS CS
                xxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran 13 kvaivGenGaGKStLlkllagll 35
                ++ +vGe+G GK+t+ ++l++  
  KOO21571.1 27 RIMLVGESGLGKTTFTRALLRPF 49
                578***************99865 PP

>> AAA_7  P-loop containing dynein motor region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   0.00014      0.17      34      75 ..      26      67 ..      21      81 .. 0.79

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00014
       AAA_7 34 kpvllvGptGtGKtviikdllkkldkekylsltinfsaqtsa 75
                  ++lvG++G GKt+ ++ ll+ + ++++l     + a+ +a
  KOO21571.1 26 FRIMLVGESGLGKTTFTRALLRPFVPDDMLHGAAYVPATLTA 67
                679*****************9998888887666555555555 PP

>> Roc  Ras of Complex, Roc, domain of DAPkinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   0.00017      0.21       1      22 [.      27      48 ..      27      82 .. 0.72

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 0.00017
                EEEEESSTTSSHHHHHHCHCT- CS
         Roc  1 KvvlvGdsgvGKtsllkrfved 22
                +++lvG+sg GKt++ + +++ 
  KOO21571.1 27 RIMLVGESGLGKTTFTRALLRP 48
                69*************9998854 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   0.0   0.00052      0.62     102     122 ..      28      48 ..       8      98 .. 0.72
   2 ?   -0.7   0.0         1   1.2e+03      46      85 ..     169     211 ..     160     223 .. 0.79

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.00052
                  EEEECSTTSSHHHHHHHHCTT CS
  RsgA_GTPase 102 svlvGqSGvGKStLinallpe 122
                  ++lvG+SG GK+t+  all  
   KOO21571.1  28 IMLVGESGLGKTTFTRALLRP 48 
                  689***********9998754 PP

  == domain 2  score: -0.7 bits;  conditional E-value: 1
                  T-EEEEEEE-GGG--HHH...HHHHHHHHHHHTTSEEEE--TT CS
  RsgA_GTPase  46 giepvivlnKiDlleeee...eleelkeelealgyevllvsak 85 
                  +i++v ++ K D ++ +e     + + +el+a g++++ +s +
   KOO21571.1 169 HINLVPIIAKSDTMTLAErdaFRRLILSELRASGVKIFQLSDT 211
                  6777888999999887776645566789999999999998765 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   0.00024      0.28       2      38 ..      28      71 ..      27      83 .. 0.79

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00024
                EEEE--SSSSHHHHHHHGGGGB.......S--EEEEE--TT--H CS
       AAA_5  2 vlLvGppGtgKselaerlaaal.......nreveyvqltrdtte 38
                ++LvG++G gK+++++ l++ +       ++ ++   lt++tte
  KOO21571.1 28 IMLVGESGLGKTTFTRALLRPFvpddmlhGAAYVPATLTARTTE 71
                79****************99887777767666776667666665 PP

>> G-alpha  G-protein alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   0.0   0.00034      0.41       2      43 ..       6      45 ..       5      87 .. 0.82

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 0.00034
                XXXXXXXXXXXXXXXXXXE..EEEEEEEESTTSSHHHHHHHH CS
     G-alpha  2 rtssaidkslkaerkarkkkrevkllllGqseSGKsTilkql 43
                r+s +++++l+ae ++     +++++l+G+s+ GK+T+ + l
  KOO21571.1  6 RESLQLSAQLNAEWQRSGI--NFRIMLVGESGLGKTTFTRAL 45
                6788999999999555555..69***************9976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (413 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       592  (0.0330191); expected 358.6 (0.02)
Passed bias filter:                      507  (0.0282782); expected 358.6 (0.02)
Passed Vit filter:                        75  (0.00418317); expected 17.9 (0.001)
Passed Fwd filter:                        15  (0.000836633); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              15  [number of targets reported over threshold]
# CPU time: 0.56u 0.27s 00:00:00.83 Elapsed: 00:00:00.42
# Mc/sec: 2961.95
//
Query:       KOO21572.1  [L=295]
Description: nitrite transporter nar1 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    7.8e-65  218.5  23.7    9.1e-65  218.3  23.7    1.0  1  Form_Nir_trans  Formate/nitrite transporter


Domain annotation for each model (and alignments):
>> Form_Nir_trans  Formate/nitrite transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  218.3  23.7   5.1e-69   9.1e-65       3     234 ..      41     282 ..      39     284 .. 0.94

  Alignments for each domain:
  == domain 1  score: 218.3 bits;  conditional E-value: 5.1e-69
                     HHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHCCT...TCHHHHHHHHHCCCHHHHHHHHHT---CCCCCCHHHHHHCTTSSS CS
  Form_Nir_trans   3 vekvvaagvkkaklsldklfllgilAGafigfgvllalvvaaalaes...npglakllgglvFpvGlilvvllgaeLfTgntllltlavlkkkvs 94 
                     + +++a+g + ak++l k++ ++i++G ++g+g+lla+vv+++++     npg++k++++++Fpv l+l+++ g++LfTgn + + +a++++ +s
      KOO21572.1  41 YLGMAAKGRDNAKMPLIKILHQSIMGGGYVGLGGLLATVVSGSVPGIassNPGMQKMIFAALFPVNLLLILMSGGQLFTGNSASVAAALYEGLIS 135
                     678999*************************************9877999*********************************9999999***** PP

                     CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTGG....HHHHHHHHHCCCSS-HHHHHHHHHHHHHHHHHHHHHHCC-SSHHHHHHHHHHHHHHHH CS
  Form_Nir_trans  95 lkkllknwlvvllgNliGsllvalllvvlsgll....aekllsiaeaklslsfleaflrGilCNwlVclavwlalaakdvigkilaiflpifafv 185
                     l +l+k w v+++gN++G+ l+a l + ++g+l    +e ++++a++k+s  f+ +++++i+CNw+Vc+av++a aa+d++gk+++i++pi +fv
      KOO21572.1 136 LDDLVKSWSVSFFGNVVGCGLLA-LAAQYTGILtggvQELAVATAMKKCSGAFMPTVVKAIMCNWCVCMAVFMAGAANDLAGKMVGIWFPISMFV 229
                     **********************9.5555666634666********************************************************** PP

                     HCT---HHHHHHHHHHHHHH....SHHHHHHHCHHHHHHHHHHHHHCCHHHHH CS
  Form_Nir_trans 186 asgfeHsvanmfliplglll....tvadfilknlipvtlGNivGGallvglly 234
                     a+g+eHsvanmfl+plgll     ++ad i+kn+ip+t+GN + Ga++v+  y
      KOO21572.1 230 AIGLEHSVANMFLLPLGLLGgaklSIADTIVKNMIPATIGNAIAGAVVVAAGY 282
                     ******************66667789***********************9887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (295 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       565  (0.0315132); expected 358.6 (0.02)
Passed bias filter:                      281  (0.0156729); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.26s 00:00:00.69 Elapsed: 00:00:00.42
# Mc/sec: 2114.58
//
Query:       KOO21573.1  [L=498]
Description: phosphate transporter [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.7e-76  255.5  19.8    2.2e-75  253.8  19.8    1.7  1  PHO4      Phosphate transporter family


Domain annotation for each model (and alignments):
>> PHO4  Phosphate transporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  253.8  19.8   1.2e-79   2.2e-75       1     337 []      26     462 ..      26     462 .. 0.81

  Alignments for each domain:
  == domain 1  score: 253.8 bits;  conditional E-value: 1.2e-79
        PHO4   1 iGanDvanafatsvgskaltlrqAvilaaifeflGavllGaeVaetirkgivdvelf.....dpselm..lgmlaallgaavwlllatvlglPvStths 92 
                 + anD an+++ts g++altl+qA+++ ai ef+Gav+lG+ Va+ i+kg+++ + f     +  +l+  +gml++l g++   llat++glP+S th 
  KOO21573.1  26 NAANDIANSVGTSYGAGALTLKQAILFGAIAEFAGAVSLGSFVAKSIAKGVIEPSSFaadgcE-GVLLfgVGMLSVLGGTGSTTLLATLYGLPISATHG 123
                 569*************************************************88877576632.3333789**************************** PP

        PHO4  93 lvGaliGaalaaeggeavkwkklvkivlswvlsPllggiiaallfllvkrlilvkeklknalralpvlvlvtiailalsilfkge.............. 177
                 ++ +l+++++aa+g++++    l+  +++wv+sP+ g+i + ll+ l+ +          +l++l      +            +              
  KOO21573.1 124 VISGLAAVGIAAHGVSSLGVAPLTATLIAWVASPMTGCITSGLLYGLISAQAS-------GLEMLSSTPSSSK-----------Shgtgaplwgppegp 204
                 ***********98888888889***************************9922.......2222222111111...........012222333333444 PP

        PHO4 178 ........................................................................................sk.kddeetek 187
                                                                                                         +      e e+
  KOO21573.1 205 atesdsepegspvkktsshpggldvvgflggllcrtnkepppdrdlilrvrdggsgsirhlaerygdkaagmghlaredveggasgegDGlPVVAEEER 303
                 444444455555555555555555555555555555557788888888888888888888888888888888888888888877765511556677899 PP

        PHO4 188 lfkflqvvsaalvsfahGanDvanaiGpllaalisiyk.....a.sk.evplwvlllgglaialGlllgGkrviktvGekitkkltpsrGfaaelaaal 279
                 +f  l+++sa++v+fahG+nD  n iGpl+a+l+  ++     + +  e+p wvlllg+ + +lG+l++G r i tvG+kit kltpsr++a+++++ +
  KOO21573.1 304 PFVPLLILSAMTVAFAHGGNDLGNSIGPLAALLVA-LSwpsgdInAIpEIPPWVLLLGASGFVLGILVLGDRTITTVGSKIT-KLTPSRSYAVQMGTGI 400
                 9****************************655554.4458765334457799******************************.6*************** PP

        PHO4 280 tvllasklglPvStThvlvgavvGvGlak....kresavnwklvrnivlaWvlTlpvsalls 337
                  vll + lgl vSt+h+lvg+++GvGl+      r +++n++++ +i+++W +T+p++al+s
  KOO21573.1 401 AVLLSTVLGLAVSTSHCLVGSIIGVGLVAkmraARDAELNFGMLTKILIGWAVTIPLAALVS 462
                 ****************************999997789***********************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (498 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       539  (0.030063); expected 358.6 (0.02)
Passed bias filter:                      281  (0.0156729); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.54u 0.21s 00:00:00.75 Elapsed: 00:00:00.38
# Mc/sec: 3883.33
//
Query:       KOO21574.1  [L=209]
Description: light harvesting complex protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    6.4e-26   91.8   0.0    8.7e-26   91.4   0.0    1.1  1  Chloroa_b-bind  Chlorophyll A-B binding protein


Domain annotation for each model (and alignments):
>> Chloroa_b-bind  Chlorophyll A-B binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   91.4   0.0   4.8e-30   8.7e-26       9     160 ..      36     187 ..      29     188 .. 0.79

  Alignments for each domain:
  == domain 1  score: 91.4 bits;  conditional E-value: 4.8e-30
                     STTXSX.BXTT-T.T-SBSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSCCCT--.TTTTTTS.....SS-HHHHHH.HHHHHHHHHHHH CS
  Chloroa_b-bind   9 lpgdlg.fDplglskdpetlkrlreaEliHGRvAMlavlGalvpelltklsaassfaegpawaeagkv.....alsvptllalqillligflela 97 
                     ++ +lg +Dplgl  ++++++r++ +E++HGR AMl++l +++  ++ +l+++ s ++ +++++ + v     +  +ptl++lqi+++  + e+ 
      KOO21574.1  36 VTLPLGvYDPLGLI-ETKDMRRFEIMEIKHGRAAMLGFLHVVLIHAGVRLPGYLSAVNDLKFSDMP-VgcfasLEATPTLGWLQIMAFTCASETG 128
                     5567889******9.6799******************************55554444444444322.23445455699***************96 PP

                     HHHHHHSTTCSS.-SSSSSSSSHCHHSTTSTT.TSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
  Chloroa_b-bind  98 reqelkapeseg.eeekrgypGglgfdplglakkdeeekaelkekEiknGRlAMiaflgfvvqe 160
                         ++       +++  + pG++g    +   +d++eka++ + E +nGR+AM++++g++v+e
      KOO21574.1 129 YAGTTSG----LvKQSASKAPGDIGGSQWKR-YSDPAEKAFKLNVERNNGRAAMMGITGCLVHE 187
                     5555433....245667888***98888875.48****************************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (209 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       296  (0.0165096); expected 358.6 (0.02)
Passed bias filter:                      263  (0.014669); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.22s 00:00:00.64 Elapsed: 00:00:00.40
# Mc/sec: 1570.91
//
Query:       KOO21575.1  [L=245]
Description: sfc1p [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.6e-40  135.5   7.4    3.4e-17   62.2   0.3    3.0  3  Mito_carr  Mitochondrial carrier protein


Domain annotation for each model (and alignments):
>> Mito_carr  Mitochondrial carrier protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.8   0.0   1.9e-10   3.5e-06      24      91 ..       1      62 [.       1      67 [. 0.94
   2 !   50.2   0.8     1e-17   1.8e-13       6      94 ..      65     155 ..      61     156 .. 0.90
   3 !   62.2   0.3   1.9e-21   3.4e-17       5      91 ..     160     243 ..     156     245 .] 0.93

  Alignments for each domain:
  == domain 1  score: 26.8 bits;  conditional E-value: 1.9e-10
                HHHHHHHHHHHHCCCSSTTTSCSSHHHHHHHHHHHHHHHGGGTTHHHHHHHHHHHHHHHHHHHHHHHH CS
   Mito_carr 24 tPldvvKtrlqtqkksskksksaaildvlkkiykeeGlrglyrGllpnllrvapasalkfvlyetlkr 91
                +P++v K rlq++ +         +l  +  +++  G+ gly G+ p++ +va ++al+ v+ye ++ 
  KOO21575.1  1 MPFEVTKNRLQLKCGPPG------MLASMADTIRRAGVGGLYYGMQPAIAQVAGKTALRYVAYEEFRS 62
                59**************87......8999************************************9986 PP

  == domain 2  score: 50.2 bits;  conditional E-value: 1e-17
                 HHHHHHHHHHHHHHHHH.HHHHHHHHHHHHHCCCSSTTTSCSS.HHHHHHHHHHHHHHHGGGTTHHHHHHHHHHHHHHHHHHHHHHHHHHC CS
   Mito_carr   6 lkellaGglagavatlv.ttPldvvKtrlqtqkksskksksaa.ildvlkkiykeeGlrglyrGllpnllrvapasalkfvlyetlkrlll 94 
                  + llaG lag+v++lv ++P++++K+  qt+ + ++ s+ +a ++++  +++ ++G++gl+ G++p+  r+++a++++f+++e++k++l+
  KOO21575.1  65 GNALLAGTLAGLVEALVwVAPTERLKVLRQTEVGGAAGSGGTAsVARAAARVLAQQGVTGLWLGAGPTAARQMVANGARFAVFEQMKTYLT 155
                 6789*********7776489***********999988776666799*****************************************9985 PP

  == domain 3  score: 62.2 bits;  conditional E-value: 1.9e-21
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSTTTSCSSHHHHHHHHHHHHHHHGGGTTHHHHHHHHHHHHHHHHHHHHHHHH CS
   Mito_carr   5 vlkellaGglagavatlvttPldvvKtrlqtqkksskksksaaildvlkkiykeeGlrglyrGllpnllrvapasalkfvlyetlkr 91 
                 ++  +laGg+ag++++++t+P+dvvKt +q+ + ++ + +   +l ++++++ +eGl ++ rGl+++  ++   +a+ f++y+ ++ 
  KOO21575.1 160 PAPAVLAGGCAGVFSVMLTNPVDVVKTHMQATPLTAGSGG---TLVAVRELVASEGLGAFARGLSARAWKIGLGQAVIFGTYDAVRS 243
                 67789******************************99865...999*************************************9875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (245 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       474  (0.0264376); expected 358.6 (0.02)
Passed bias filter:                      299  (0.0166769); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.26s 00:00:00.68 Elapsed: 00:00:00.42
# Mc/sec: 1759.85
//
Query:       KOO21576.1  [L=904]
Description: translin-associated factor x-interacting protein 1 isoform 1 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.5e-07   31.8   7.2    1.8e-06   28.3   1.5    3.7  2  TSNAXIP1_N       Translin-associated factor X-interacting N-t
    0.00015   21.5  14.0    0.00029   20.5  14.0    1.4  1  Filament         Intermediate filament protein
  ------ inclusion threshold ------
      0.058   13.3   2.0       0.16   11.9   2.0    1.7  1  NleF_casp_inhib  NleF caspase inhibitor
       0.15   11.8   5.2        2.8    7.7   0.0    4.0  4  3-PAP            Myotubularin-associated protein
       0.49   10.1  11.3        2.5    7.8  11.1    2.2  1  SHE3             SWI5-dependent HO expression protein 3
        4.2    7.4  23.7       0.44   10.6  13.9    3.2  3  CENP-F_leu_zip   Leucine-rich repeats of kinetochore protein 
        4.3    6.1  14.1        9.3    5.0  14.1    1.6  1  Spc7             Spc7 kinetochore protein
         10    6.5  19.2        2.4    8.5   3.3    2.3  2  Fez1             Fez1


Domain annotation for each model (and alignments):
>> TSNAXIP1_N  Translin-associated factor X-interacting N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.3   1.5   8.2e-10   1.8e-06       3      97 ..      63     158 ..      62     248 .. 0.90
   2 ?    1.9   0.4      0.12   2.8e+02      33      94 ..     248     304 ..     246     320 .. 0.64

  Alignments for each domain:
  == domain 1  score: 28.3 bits;  conditional E-value: 8.2e-10
  TSNAXIP1_N   3 klekelqklkctedgpqekrlqvyrevFedlieefkaYkdlLseIKkEYelyiahllesqreaqylkaklktlsessdkraleleek.reelrale 97 
                 ++++el+  +  + +   +rl v+r+vF ++i    +Y++lL ++ + Ye ++   + +++   +l+++l+++++++ +   +l+    +e ++l 
  KOO21576.1  63 FVRQELRHANPASGTFIDDRLGVFRRVFGHFIAANGSYAPLLLAVQEAYERALYDARARSSGVDALSERLALMQDEARQLLAALRADhAAEREMLM 158
                 6789999997777777899***********************************************************888888877555555554 PP

  == domain 2  score: 1.9 bits;  conditional E-value: 0.12
  TSNAXIP1_N  33 lieefkaYkdlLseIKkEYelyiahllesqreaqylkaklktlsessdkraleleekreelr 94 
                 li++  + k+ L e+K+ Y++ +++   ++ ++      + t+++++++   +++++r+el 
  KOO21576.1 248 LINDDLEMKKELHEVKSAYDELVSATVPKEAHK----LSIDTVARTHVELR-TMKQERDELT 304
                 677777888889999999998876544333222....23345555444444.5555555555 PP

>> Filament  Intermediate filament protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.5  14.0   1.3e-07   0.00029      48     185 ..     107     273 ..     101     314 .. 0.86

  Alignments for each domain:
  == domain 1  score: 20.5 bits;  conditional E-value: 1.3e-07
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.........................XXXXXXXXXXXXXXXXXXXXXXXXXXX CS
    Filament  48 lkelyekeleelrkqldeltkerarlqleldnlreeledlrkkyeke.........................lnkreevEaelkalrkdldeatlarvd 121
                 ++e+ye+ l ++r++   + +  +rl l +d++r+ l+ lr+  + e                          ++ + + ael++ +++++e  l+ v+
  KOO21576.1 107 VQEAYERALYDARARSSGVDALSERLALMQDEARQLLAALRADHAAEremlmtrigetetrvhaangevgelRQEVQRLSAELAKSQRQVHEMELKNVE 205
                 6899***************************************999999*******************9887777788889999999************ PP

                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX....XXXXXXXXXXXXXXXXXXX CS
    Filament 122 LekkvesLkeelaflkkvheeEvkelqkqvseqvlvevdaarkld....Lteilkeiraqyeelaekn 185
                 L k ve  + e +  ++  ++E++e+ k  +e + + + ++  ++    +++ l+e+++ y+el++  
  KOO21576.1 206 LGKSVELWTGETMNARRQAQAEMHEMMKLRQEVREMKLRETTLINddleMKKELHEVKSAYDELVSAT 273
                 ************************9999888777777666544433455**************99764 PP

>> NleF_casp_inhib  NleF caspase inhibitor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   2.0   7.2e-05      0.16      20     104 ..     158     242 ..     153     287 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 7.2e-05
  NleF_casp_inhib  20 lklifereiastTaeekikElsdkltklknsvlseredlYevedykleggqkveLkegitaedRdnylkdlvalyqiknavkeki 104
                      + +i e e     a+ ++ El+++++ l  ++ + + ++ e+e +++e g+ veL  g t + R +   ++  + ++++ v+e+ 
       KOO21576.1 158 MTRIGETETRVHAANGEVGELRQEVQRLSAELAKSQRQVHEMELKNVELGKSVELWTGETMNARRQAQAEMHEMMKLRQEVREMK 242
                      66788888888999999****************************************************************9984 PP

>> 3-PAP  Myotubularin-associated protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.5   0.1       0.1   2.3e+02      90     128 ..     113     151 ..     108     155 .. 0.87
   2 ?    1.0   0.2      0.14   3.2e+02     108     130 ..     174     196 ..     154     198 .. 0.77
   3 ?   -0.3   0.1      0.37   8.4e+02     104     125 ..     226     245 ..     210     248 .. 0.82
   4 ?    7.7   0.0    0.0012       2.8      31     102 ..     571     640 ..     553     646 .. 0.81

  Alignments for each domain:
  == domain 1  score: 1.5 bits;  conditional E-value: 0.1
       3-PAP  90 RwvPeaqikhGgpvtaahklseLadeveaLqraLrqkrs 128
                 R +  a+++++g  ++ ++l  ++de ++L  aLr ++ 
  KOO21576.1 113 RALYDARARSSGVDALSERLALMQDEARQLLAALRADHA 151
                 67778999999999*********************9886 PP

  == domain 2  score: 1.0 bits;  conditional E-value: 0.14
       3-PAP 108 klseLadeveaLqraLrqkrssl 130
                 ++ eL++ev+ L+ +L + +++ 
  KOO21576.1 174 EVGELRQEVQRLSAELAKSQRQV 196
                 6789************9998865 PP

  == domain 3  score: -0.3 bits;  conditional E-value: 0.37
       3-PAP 104 taahklseLadeveaLqraLrq 125
                 + +h++++L++ev+  + +Lr+
  KOO21576.1 226 AEMHEMMKLRQEVR--EMKLRE 245
                 56899999999999..667776 PP

  == domain 4  score: 7.7 bits;  conditional E-value: 0.0012
       3-PAP  31 rrnslllrlksdlllaessdsndseqffrewlskpadlhglLlpqlsgkqiklWkqcYlRwvPeaqikhGgp 102
                 +rn+l+  l+++      s ++ + + f+     p d hgl   q+ ++ + lW+   lR   ea +++++ 
  KOO21576.1 571 QRNQLVRTLQRES--GGVSAESIKVEHFEPAPKDPCDGHGLSPAQCEVQRVFLWMALTLRDEVEASVRRSAL 640
                 6777777777755..3444444456788888999***************************99**9998876 PP

>> SHE3  SWI5-dependent HO expression protein 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.8  11.1    0.0011       2.5      45     129 ..     173     257 ..     125     305 .. 0.87

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 0.0011
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
        SHE3  45 enlaslkhENdnLsslLkRKerrlkdlekelselkesveelklekkqlkkrlenssaseteleeelerlkvqYdalvdsqkeYke 129
                  ++ +l++E + Ls+ L + +r+++++e ++ el +sve  + e+ + + +++   ++ ++l++e+ ++k    +l++   e k+
  KOO21576.1 173 GEVGELRQEVQRLSAELAKSQRQVHEMELKNVELGKSVELWTGETMNARRQAQAEMHEMMKLRQEVREMKLRETTLINDDLEMKK 257
                 567899*****************************************************************99999987766654 PP

>> CENP-F_leu_zip  Leucine-rich repeats of kinetochore protein Cenp-F/LEK1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6  13.9    0.0002      0.44      40     139 ..     140     239 ..     122     243 .. 0.75
   2 ?    0.1   5.1      0.34   7.7e+02      41     101 ..     211     271 ..     205     278 .. 0.76
   3 ?   -0.9   3.5      0.69   1.5e+03      69      91 ..     287     309 ..     239     359 .. 0.68

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.0002
  CENP-F_leu_zip  40 qekvileaEtskaevetlkeeieelaeelreleldLvalrsekeeLekelqkkqervseLeslnsslenlleekEqekvqmkeeskaaveeLqtq 134
                     ++ +     +  ae e l + i e +++ +  + ++ +lr+e + L  el k+q++v+e+e  n++l + +e    e ++ + +++a+++e+ + 
      KOO21576.1 140 RQLLAALRADHAAEREMLMTRIGETETRVHAANGEVGELRQEVQRLSAELAKSQRQVHEMELKNVELGKSVELWTGETMNARRQAQAEMHEMMKL 234
                     33333333345589999*****************************************************9988888777766666666665554 PP

  CENP-F_leu_zip 135 lkeln 139
                      +e  
      KOO21576.1 235 RQEVR 239
                     44443 PP

  == domain 2  score: 0.1 bits;  conditional E-value: 0.34
  CENP-F_leu_zip  41 ekvileaEtskaevetlkeeieelaeelreleldLvalrsekeeLekelqkkqervseLes 101
                     e  + e  +++ ++++  +e+++l++e re++l  ++l ++  e++kel + ++  +eL s
      KOO21576.1 211 ELWTGETMNARRQAQAEMHEMMKLRQEVREMKLRETTLINDDLEMKKELHEVKSAYDELVS 271
                     5555566677788888788888888999988888888888888899999888888777755 PP

  == domain 3  score: -0.9 bits;  conditional E-value: 0.69
  CENP-F_leu_zip  69 releldLvalrsekeeLekelqk 91 
                      + +++L ++++e++eL++ l  
      KOO21576.1 287 ARTHVELRTMKQERDELTRLLAG 309
                     45568899999999999988764 PP

>> Spc7  Spc7 kinetochore protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.0  14.1    0.0041       9.3     161     285 ..     139     263 ..     107     305 .. 0.76

  Alignments for each domain:
  == domain 1  score: 5.0 bits;  conditional E-value: 0.0041
        Spc7 161 qeeeldellpeleeekaeleeeleklqeaaeelesidkeeLeelreelaelkaeieekkkelaelqeqleeleekie....elkeqkseleeeiaeaer 255
                  +++l +l  +  +e++ l+ ++ + +++++      + e+ elr+e+++l+ae+++ ++++ e++ +  el +++e    e+ + ++++++e+ e  +
  KOO21576.1 139 ARQLLAALRADHAAEREMLMTRIGETETRVH----AANGEVGELRQEVQRLSAELAKSQRQVHEMELKNVELGKSVElwtgETMNARRQAQAEMHEMMK 233
                 2223344444444455555555555555554....4789********************************9999983333456778999999999999 PP

        Spc7 256 vleeckgwsesevsrlkeevkaleeltgwk 285
                 +++e ++++  e   +++ +++ +el+++k
  KOO21576.1 234 LRQEVREMKLRETTLINDDLEMKKELHEVK 263
                 999999999999999999999988888876 PP

>> Fez1  Fez1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.5   3.3    0.0011       2.4      79     155 ..     122     200 ..     106     216 .. 0.72
   2 ?    6.8  15.3    0.0036       8.1      24     154 ..     166     303 ..     156     321 .. 0.73

  Alignments for each domain:
  == domain 1  score: 8.5 bits;  conditional E-value: 0.0011
        Fez1  79 kseaellrekvekleeelkelreelselsleeeeaalesdeakaqrqe..aeeleelkreverlraeLkeerqkkeeqa 155
                 +s ++ l+e++  +++e ++l  +l++ ++ e+e+ ++     + r +  + e++el++ev+rl aeL++ +++ +e++
  KOO21576.1 122 SSGVDALSERLALMQDEARQLLAALRADHAAEREMLMTRIGETETRVHaaNGEVGELRQEVQRLSAELAKSQRQVHEME 200
                 566788888888899999998888888766666655333222222222236899**************99988877765 PP

  == domain 2  score: 6.8 bits;  conditional E-value: 0.0036
        Fez1  24 aevtqklseivalkaqlrelrakleekeeeikeleesleektlelevcenelqrkkseaellrekvekleeelkelreelselsleeeeaalesdeaka 122
                 + v +  +e+ +l+ +++ l+a+l +++++++e+e +  e  +++e    e  +++ +a+    ++ kl +e++e++ + ++l +++ e+++e +e+k 
  KOO21576.1 166 TRVHAANGEVGELRQEVQRLSAELAKSQRQVHEMELKNVELGKSVELWTGETMNARRQAQAEMHEMMKLRQEVREMKLRETTLINDDLEMKKELHEVKS 264
                 555566678888899999999999999999998888888888888888888888888888877778888888888887666666666666666666666 PP

        Fez1 123 qrqe.......aeeleelkreverlraeLkeerqkkeeq 154
                   +e       +e+ +    +v+r + eL++ +q+++e 
  KOO21576.1 265 AYDElvsatvpKEAHKLSIDTVARTHVELRTMKQERDEL 303
                 665567777754455555566777777888877777665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (904 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1199  (0.0668749); expected 358.6 (0.02)
Passed bias filter:                      505  (0.0281667); expected 358.6 (0.02)
Passed Vit filter:                        81  (0.00451782); expected 17.9 (0.001)
Passed Fwd filter:                        20  (0.00111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.83u 0.30s 00:00:01.12 Elapsed: 00:00:00.46
# Mc/sec: 5889.88
//
Query:       KOO21577.1  [L=190]
Description: NADPh oxidase 5 isoform 1 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.9e-16   56.5   1.6    0.00012   21.4   0.1    4.0  4  EF-hand_1  EF hand
    3.8e-14   51.3   2.0    0.00044   20.0   0.1    3.9  4  EF-hand_6  EF-hand domain
    4.3e-13   49.5   2.4    1.8e-07   31.5   0.4    3.3  3  EF-hand_7  EF-hand domain pair
    8.7e-05   22.3   4.3       0.54   10.2   0.1    3.9  4  EF-hand_8  EF-hand domain pair
    0.00063   19.7   4.1      0.072   13.1   0.1    3.2  4  EF-hand_4  Cytoskeletal-regulatory complex EF hand
     0.0092   15.4   2.1        4.3    7.0   0.0    3.4  4  EF-hand_5  EF hand
  ------ inclusion threshold ------
      0.012   16.3   0.0       0.15   12.8   0.0    2.4  3  RecG_N     RecG N-terminal helical domain
      0.016   15.7   0.4        1.2    9.6   0.0    2.8  3  Pox_D5     Poxvirus D5 protein-like


Domain annotation for each model (and alignments):
>> EF-hand_1  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.0      0.84   1.9e+03      15      28 ..      33      46 ..      33      47 .. 0.80
   2 !   18.7   0.0   3.9e-07   0.00088       2      28 ..      55      81 ..      54      82 .. 0.92
   3 !   21.4   0.1   5.2e-08   0.00012       2      29 .]      91     118 ..      90     118 .. 0.92
   4 !   13.2   0.1   2.2e-05     0.049       3      28 ..     145     170 ..     143     171 .. 0.90

  Alignments for each domain:
  == domain 1  score: -1.1 bits;  conditional E-value: 0.84
                SEEEHHHHHHHHHH CS
   EF-hand_1 15 GkIdfeEfkellkk 28
                G I++  fke +++
  KOO21577.1 33 GSINKHMFKEGVSS 46
                78999999998876 PP

  == domain 2  score: 18.7 bits;  conditional E-value: 3.9e-07
                HHHHHHHHTTTSSSEEEHHHHHHHHHH CS
   EF-hand_1  2 lkeiFrefDkDgdGkIdfeEfkellkk 28
                ++++++++D+D++G +++ Ef++++++
  KOO21577.1 55 VDRVWKLLDVDRSGAVEWGEFVNAVNA 81
                799********************9976 PP

  == domain 3  score: 21.4 bits;  conditional E-value: 5.2e-08
                 HHHHHHHHTTTSSSEEEHHHHHHHHHHH CS
   EF-hand_1   2 lkeiFrefDkDgdGkIdfeEfkellkkl 29 
                 l+  Fr++D D++  Id+eE+ ++++++
  KOO21577.1  91 LRFCFRVYDSDNSESIDREELHAMFSSM 118
                 7889********************9875 PP

  == domain 4  score: 13.2 bits;  conditional E-value: 2.2e-05
                 HHHHHHHTTTSSSEEEHHHHHHHHHH CS
   EF-hand_1   3 keiFrefDkDgdGkIdfeEfkellkk 28 
                 + i + fD D++  +df+E +e+lk+
  KOO21577.1 145 NSIYDSFDADRNSALDFSEVLEALKR 170
                 678899******************97 PP

>> EF-hand_6  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.0       2.5   5.5e+03       1       8 [.      14      21 ..      10      25 .. 0.61
   2 !   13.9   0.0   1.8e-05     0.039       3      27 ..      56      80 ..      54      85 .. 0.89
   3 !   20.0   0.1     2e-07   0.00044       1      27 [.      90     116 ..      90     120 .. 0.92
   4 !   14.5   0.1   1.1e-05     0.025       3      28 ..     145     170 ..     143     176 .. 0.90

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 2.5
   EF-hand_6  1 elreaFkl 8 
                el+++F+ 
  KOO21577.1 14 ELYRLFNR 21
                34555555 PP

  == domain 2  score: 13.9 bits;  conditional E-value: 1.8e-05
   EF-hand_6  3 reaFklfDkdgdGkidaeElrkalr 27
                ++++kl+D+d++G + + E+++a +
  KOO21577.1 56 DRVWKLLDVDRSGAVEWGEFVNAVN 80
                5799*****************9976 PP

  == domain 3  score: 20.0 bits;  conditional E-value: 2e-07
   EF-hand_6   1 elreaFklfDkdgdGkidaeElrkalr 27 
                 +lr  F+ +D d++ +id+eEl ++++
  KOO21577.1  90 KLRFCFRVYDSDNSESIDREELHAMFS 116
                 58999*******************998 PP

  == domain 4  score: 14.5 bits;  conditional E-value: 1.1e-05
   EF-hand_6   3 reaFklfDkdgdGkidaeElrkalrk 28 
                 +++++ fD d++  +d++E+  al++
  KOO21577.1 145 NSIYDSFDADRNSALDFSEVLEALKR 170
                 7899********************95 PP

>> EF-hand_7  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.1   6.6e-06     0.015      20      70 ..      11      79 ..       2      80 .. 0.74
   2 !   31.5   0.4   7.9e-11   1.8e-07       2      70 ..      89     168 ..      88     169 .. 0.75
   3 !    8.7   0.2     0.001       2.3       7      42 ..     147     176 ..     141     178 .. 0.77

  Alignments for each domain:
  == domain 1  score: 15.8 bits;  conditional E-value: 6.6e-06
   EF-hand_7 20 dkeellrllrkifqga.....................gegsklsdeelellfkefDtdkdGvisfdEFlkly 70
                +++el rl+ +++  a                     + +++ +d  +++++k +D d++G + + EF++++
  KOO21577.1 11 TRTELYRLFNRFK--AlcklsgtpgsinkhmfkegvsSLAFE-DDNFVDRVWKLLDVDRSGAVEWGEFVNAV 79
                5666555666543..134666667777777776666666677.7788*********************9875 PP

  == domain 2  score: 31.5 bits;  conditional E-value: 7.9e-11
   EF-hand_7   2 eklkeaFkelDtdgdgyldkeellrllrkifqga..............gegsklsdeelellfkefDtdkdGvisfdEFlkly 70 
                 +kl+ +F+ +D+d++ ++d+eel+ ++ ++                     ++l ++ +  + + fD d++  ++f+E l++ 
  KOO21577.1  89 DKLRFCFRVYDSDNSESIDREELHAMFSSM---LlcapgtgtripeasPALNELIEDFVNSIYDSFDADRNSALDFSEVLEAL 168
                 699*******************99877764...455597766654444222223335577777788************99875 PP

  == domain 3  score: 8.7 bits;  conditional E-value: 0.001
   EF-hand_7   7 aFkelDtdgdgyldkeellrllrkifqgagegskls 42 
                 +++++D d++  ld +e+l++l+      + g+++s
  KOO21577.1 147 IYDSFDADRNSALDFSEVLEALK------RKGNEIS 176
                 57899999999999999777888......6666665 PP

>> EF-hand_8  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.0      0.62   1.4e+03       5      12 ..      10      17 ..       8      29 .. 0.81
   2 !    7.7   0.0    0.0014       3.2      33      52 ..      60      79 ..      33      82 .. 0.85
   3 !   10.2   0.1   0.00024      0.54      27      52 ..      90     115 ..      84     117 .. 0.89
   4 ?    3.5   0.1     0.028        64      31      54 ..     147     170 ..     138     171 .. 0.84

  Alignments for each domain:
  == domain 1  score: -0.8 bits;  conditional E-value: 0.62
   EF-hand_8  5 Itreelrr 12
                +tr+el+r
  KOO21577.1 10 MTRTELYR 17
                89999999 PP

  == domain 2  score: 7.7 bits;  conditional E-value: 0.0014
   EF-hand_8 33 refDtdgdGkisfeEFcvll 52
                +++D d++G++ + EF++ +
  KOO21577.1 60 KLLDVDRSGAVEWGEFVNAV 79
                679**************987 PP

  == domain 3  score: 10.2 bits;  conditional E-value: 0.00024
   EF-hand_8  27 evdilfrefDtdgdGkisfeEFcvll 52 
                 +++  fr  D d++  i+ eE ++++
  KOO21577.1  90 KLRFCFRVYDSDNSESIDREELHAMF 115
                 577789******************97 PP

  == domain 4  score: 3.5 bits;  conditional E-value: 0.028
   EF-hand_8  31 lfrefDtdgdGkisfeEFcvller 54 
                 + + fD d++ +++f E ++ l+r
  KOO21577.1 147 IYDSFDADRNSALDFSEVLEALKR 170
                 55679************9999886 PP

>> EF-hand_4  Cytoskeletal-regulatory complex EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.1   0.1   3.2e-05     0.072      42      69 ..      52      79 ..      10      84 .. 0.82
   2 ?    0.1   0.0      0.34   7.7e+02      43      69 ..      89     115 ..      82     136 .. 0.73
   3 !    6.3   0.1    0.0039       8.8      39      67 ..     138     166 ..     125     172 .. 0.87
   4 ?   -2.6   0.0       2.3   5.2e+03       7      16 ..     173     182 ..     169     185 .. 0.81

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 3.2e-05
   EF-hand_4 42 edklekiwdladidedgkldfeefciam 69
                ++ ++++w+l d+d  g +++ ef+ a+
  KOO21577.1 52 DNFVDRVWKLLDVDRSGAVEWGEFVNAV 79
                45579*******************9765 PP

  == domain 2  score: 0.1 bits;  conditional E-value: 0.34
   EF-hand_4  43 dklekiwdladidedgkldfeefciam 69 
                 dkl   + + d d+ +++d ee+  + 
  KOO21577.1  89 DKLRFCFRVYDSDNSESIDREELHAMF 115
                 677778889999999999999986655 PP

  == domain 3  score: 6.3 bits;  conditional E-value: 0.0039
   EF-hand_4  39 kleedklekiwdladidedgkldfeefci 67 
                 +l ed +++i+d  d d +  ldf e   
  KOO21577.1 138 ELIEDFVNSIYDSFDADRNSALDFSEVLE 166
                 5788999******************9865 PP

  == domain 4  score: -2.6 bits;  conditional E-value: 2.3
   EF-hand_4   7 leikkyweif 16 
                  ei   weif
  KOO21577.1 173 NEISDPWEIF 182
                 689999***9 PP

>> EF-hand_5  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.0       1.3   2.9e+03      17      24 ..      11      18 ..      11      19 .. 0.80
   2 !    6.2   0.0    0.0035       7.7       7      21 ..      61      75 ..      60      80 .. 0.86
   3 !    7.0   0.0    0.0019       4.3       5      23 ..      95     113 ..      92     116 .. 0.89
   4 ?   -2.3   0.1       1.6   3.7e+03       8      13 ..     151     156 ..     149     163 .. 0.73

  Alignments for each domain:
  == domain 1  score: -1.9 bits;  conditional E-value: 1.3
                -HHHHHHH CS
   EF-hand_5 17 skeELktl 24
                ++ EL++l
  KOO21577.1 11 TRTELYRL 18
                588***96 PP

  == domain 2  score: 6.2 bits;  conditional E-value: 0.0035
                HH-SS-SSCE-HHHH CS
   EF-hand_5  7 aiDlNgDGkIskeEL 21
                 +D++++G +   E+
  KOO21577.1 61 LLDVDRSGAVEWGEF 75
                58*********9999 PP

  == domain 3  score: 7.0 bits;  conditional E-value: 0.0019
                 HHHH-SS-SSCE-HHHHHH CS
   EF-hand_5   5 FqaiDlNgDGkIskeELkt 23 
                 F+  D +++  I++eEL +
  KOO21577.1  95 FRVYDSDNSESIDREELHA 113
                 9999*************76 PP

  == domain 4  score: -2.3 bits;  conditional E-value: 1.6
                 H-SS-S CS
   EF-hand_5   8 iDlNgD 13 
                 +D+++ 
  KOO21577.1 151 FDADRN 156
                 788874 PP

>> RecG_N  RecG N-terminal helical domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.0       6.8   1.5e+04      20      31 ..      12      23 ..       2      39 .. 0.57
   2 ?    0.2   0.0      0.55   1.2e+03       4      31 ..      53      80 ..      51      92 .. 0.87
   3 ?   12.8   0.0   6.7e-05      0.15       1      40 [.     139     178 ..     139     181 .. 0.96

  Alignments for each domain:
  == domain 1  score: -3.3 bits;  conditional E-value: 6.8
                TT........HH CS
      RecG_N 20 kleteelieeik 31
                + e   l++ +k
  KOO21577.1 12 RTELYRLFNRFK 23
                333334444333 PP

  == domain 2  score: 0.2 bits;  conditional E-value: 0.55
                HHHHHHHHHHTS---TTT........HH CS
      RecG_N  4 eFLeelekllkkvlsgkleteelieeik 31
                +F +++ kll+   sg +e+ e ++ ++
  KOO21577.1 53 NFVDRVWKLLDVDRSGAVEWGEFVNAVN 80
                6999999999999999999999998876 PP

  == domain 3  score: 12.8 bits;  conditional E-value: 6.7e-05
                 SHHHHHHHHHHHHTS---TTT........HHHHHHH---G CS
      RecG_N   1 liEeFLeelekllkkvlsgkleteelieeikkkleliddp 40 
                 liE+F + ++ + ++  +  l+ +e++e +k+k ++i dp
  KOO21577.1 139 LIEDFVNSIYDSFDADRNSALDFSEVLEALKRKGNEISDP 178
                 8**********************************99987 PP

>> Pox_D5  Poxvirus D5 protein-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   0.0   0.00055       1.2      13      61 ..       4      54 ..       1      78 [. 0.82
   2 ?    2.6   0.0     0.087     2e+02       8      33 ..      92     117 ..      91     120 .. 0.91
   3 ?   -0.3   0.0      0.69   1.5e+03       3      22 ..     137     156 ..     136     173 .. 0.81

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 0.00055
      Pox_D5 13 lfeeekstrvpsdvlYeaYkafcekngykpvlskrtFqkrlkk.ilee.gf 61
                l+ e   tr+  + l++++ka c+ +g    ++k++F+++ ++ ++e+ +f
  KOO21577.1  4 LLRETSMTRTELYRLFNRFKALCKLSGTPGSINKHMFKEGVSSlAFEDdNF 54
                5666678899999**************************999844443445 PP

  == domain 2  score: 2.6 bits;  conditional E-value: 0.087
      Pox_D5   8 dFveelfeeekstrvpsdvlYeaYka 33 
                  F++++++ + s+ + +  l++ + +
  KOO21577.1  92 RFCFRVYDSDNSESIDREELHAMFSS 117
                 7********************99987 PP

  == domain 3  score: -0.3 bits;  conditional E-value: 0.69
      Pox_D5   3 nDpvldFveelfeeekstrv 22 
                 n+ + dFv+ +++ ++ +r+
  KOO21577.1 137 NELIEDFVNSIYDSFDADRN 156
                 67888999999998877765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (190 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       480  (0.0267723); expected 358.6 (0.02)
Passed bias filter:                      466  (0.0259914); expected 358.6 (0.02)
Passed Vit filter:                        48  (0.00267723); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.42u 0.27s 00:00:00.69 Elapsed: 00:00:00.42
# Mc/sec: 1371.27
//
Query:       KOO21578.1  [L=147]
Description: hypothetical protein Ctob_001649 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
  ------ inclusion threshold ------
      0.028   14.4   0.0      0.041   13.8   0.0    1.6  1  Prot_ATP_ID_OB  Proteasomal ATPase OB C-terminal domain


Domain annotation for each model (and alignments):
>> Prot_ATP_ID_OB  Proteasomal ATPase OB C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.0   2.3e-06     0.041      12      46 ..     103     137 ..      21     142 .. 0.87

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 2.3e-06
                     SEEEEE-TTS-EEEEEE-GGGSSST--TTEEEEEE CS
  Prot_ATP_ID_OB  12 eraiVktssdeevvvslagavpremLrpgDlVavd 46 
                      + iV +++ e +vv +ag+    +L+ g  Va++
      KOO21578.1 103 PGKIVSSEGSERYVVEMAGSFEQLKLKFGNVVALH 137
                     5679*****************************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (147 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       249  (0.0138881); expected 358.6 (0.02)
Passed bias filter:                      237  (0.0132188); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.22s 00:00:00.61 Elapsed: 00:00:00.39
# Mc/sec: 1128.74
//
Query:       KOO21579.1  [L=826]
Description: hypothetical protein Ctob_000546, partial [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (826 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       548  (0.030565); expected 358.6 (0.02)
Passed bias filter:                      397  (0.0221429); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.65u 0.27s 00:00:00.92 Elapsed: 00:00:00.45
# Mc/sec: 5562.23
//
Query:       KOO21580.1  [L=422]
Description: glyoxalase domain-containing protein 4-like protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    5.1e-18   65.0   0.0    1.8e-17   63.2   0.0    1.8  2  Thioredoxin    Thioredoxin
    2.5e-05   24.5   0.0       0.27   11.5   0.0    3.5  3  Glyoxalase     Glyoxalase/Bleomycin resistance protein/Dioxyg
    3.8e-05   23.5   0.0    6.3e-05   22.8   0.0    1.2  1  Thioredoxin_9  Thioredoxin
      5e-05   23.5   0.0      0.015   15.6   0.0    2.3  2  Thioredoxin_8  Thioredoxin-like
     0.0015   18.5   0.0     0.0031   17.5   0.0    1.5  1  Thioredoxin_3  Thioredoxin domain
     0.0041   16.5   0.0     0.0057   16.0   0.0    1.3  1  OST3_OST6      OST3 / OST6 family, transporter family
     0.0054   17.5   0.0       0.29   12.0   0.0    3.0  2  Glyoxalase_6   Glyoxalase-like domain
     0.0058   17.1   0.1      0.053   14.0   0.1    2.2  1  Thioredoxin_2  Thioredoxin-like domain
  ------ inclusion threshold ------
       0.19   11.5   0.0       0.32   10.8   0.0    1.3  1  DIM1           Mitosis protein DIM1


Domain annotation for each model (and alignments):
>> Thioredoxin  Thioredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.0       1.6   3.3e+03      32      47 ..     222     237 ..     221     243 .. 0.79
   2 !   63.2   0.0   9.2e-21   1.8e-17      17     101 ..     332     414 ..     317     416 .. 0.91

  Alignments for each domain:
  == domain 1  score: -1.9 bits;  conditional E-value: 1.6
                  HHHCHHHHHHHHHHHC CS
  Thioredoxin  32 hCkalaPeleklaeel 47 
                  +C+a+ P++e++    
   KOO21580.1 222 SCRAVYPFYEAAEASG 237
                  6********9987665 PP

  == domain 2  score: 63.2 bits;  conditional E-value: 9.2e-21
                  TSSEEEEEEE-TTSHHHHCHHHHHHHHHHHCTTTSEEEEEETTTSHHHHHHTT-SSSSEEEEEETTEEEEEEESS-HHHHHHHHH CS
  Thioredoxin  17 ekklvlveFyApwCghCkalaPeleklaeelkdkvklakvdvdenedlakkyevegiPtlklfkngkevkkyegarekeklaafl 101
                  +   v+++F A wC  Ck++ P++e+la++l  +v +a vd+de  +l++ y+++++P ++++k g +v++y+g++  ++l+a++
   KOO21580.1 332 ATGVVVLDFGAGWCKNCKSILPFVETLATALP-DVAFATVDIDEAGELVEAYQITAVPHFVVLKGGAKVDEYVGSKG-TDLEAKV 414
                  567899**************************.*****************************************998.7777766 PP

>> Glyoxalase  Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.5   0.0   0.00013      0.27      10      37 ..      25      60 ..      17     113 .. 0.73
   2 !    8.1   0.0    0.0015         3       4      28 ..     150     174 ..     147     271 .. 0.69
   3 ?   -1.0   0.0      0.95   1.9e+03      59      92 ..     303     380 ..     299     384 .. 0.65

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.00013
                SHHHHHHHHHHHHHTSEEEEEEEE........EEST CS
  Glyoxalase 10 gdleksldFYtkvLGfklvkktdn........teet 37
                g l+ sl+FY+ v+Gf++++ +++        ++++
  KOO21580.1 25 GSLKNSLRFYELVFGFRVLRHEEFesgceatcNGPY 60
                67889****************997777777664444 PP

  == domain 2  score: 8.1 bits;  conditional E-value: 0.0015
                 EEEEEESHHHHHHHHHHHHHTSEEE CS
  Glyoxalase   4 hvallvgdleksldFYtkvLGfklv 28 
                  v l+ +dl+++ +++++vLG++++
  KOO21580.1 150 AVGLRSTDLAATKQYWCDVLGMTVF 174
                 5678999***************986 PP

  == domain 3  score: -1.0 bits;  conditional E-value: 0.95
                 CCTTSCTHHCC.........................................BSC....TSEEEEEEEEEHCHHHHHHH CS
  Glyoxalase  59 apsgaakhvkk.........................................iee....tvhhvafialdvedvgkald 92 
                 +p++++kh+ k                                         + e        vaf + d+++ g+ ++
  KOO21580.1 303 PPKPDQKHQAKglravtessqvsslaassatgvvvldfgagwckncksilpfV-EtlatALPDVAFATVDIDEAGELVE 380
                 56666666666777777777777777777777777776667766666666541.1344467788888888888887765 PP

>> Thioredoxin_9  Thioredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.8   0.0   3.2e-08   6.3e-05      18     107 ..     310     396 ..     304     410 .. 0.84

  Alignments for each domain:
  == domain 1  score: 22.8 bits;  conditional E-value: 3.2e-08
                    HHHHHHHHHHHH---HHHHHT--S-EEEEEE--TT-HHHHHHHHHHHHHHHH-TTEEEEEE-HHHHHHHTTTTTT-SS--SSEEEEE-TT CS
  Thioredoxin_9  18 rmlrvykkvelseeteekiksiekklkilvltedwCgDaavnvPvlakiaelnpnievkillrdenlelmdqyltngaraiPtliildee 107
                    ++ + ++ v+ s++++  ++s  + + +l + + wC  +  ++P+++ +a + p++ +  +  de  el++ y+     a+P +++l+ +
     KOO21580.1 310 HQAKGLRAVTESSQVSSLAASSATGVVVLDFGAGWCKNCKSILPFVETLATALPDVAFATVDIDEAGELVEAYQI---TAVPHFVVLKGG 396
                    5555556666666777778888888999999******************************************77...999999999755 PP

>> Thioredoxin_8  Thioredoxin-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.0   7.4e-06     0.015       3      45 ..     335     374 ..     334     377 .. 0.85
   2 !    7.2   0.0    0.0031       6.3      67      92 ..     371     396 ..     359     399 .. 0.75

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 7.4e-06
                    EEEEEE--SSSHHHHHHHHHHHHHHHHHHHTTSEEEEEEE-SS CS
  Thioredoxin_8   3 vvlLyfgaswcppckaftpklkelyeklkkkkkveivyvsldk 45 
                    vv+L fga wc++ck ++p +  l + l    +v +  v +d+
     KOO21580.1 335 VVVLDFGAGWCKNCKSILPFVETLATALP---DVAFATVDIDE 374
                    79*******************99999985...67777766665 PP

  == domain 2  score: 7.2 bits;  conditional E-value: 0.0031
                    -TT-HHHHTT-S--TT-SEEEEE-TT CS
  Thioredoxin_8  67 ddkkrnklkkkynvkaiPtlvvldkn 92 
                    d ++  +l + y+++a+P++vvl+  
     KOO21580.1 371 DIDEAGELVEAYQITAVPHFVVLKGG 396
                    3355789****************865 PP

>> Thioredoxin_3  Thioredoxin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5   0.0   1.5e-06    0.0031       6      55 ..     340     392 ..     335     418 .. 0.86

  Alignments for each domain:
  == domain 1  score: 17.5 bits;  conditional E-value: 1.5e-06
                    ESSS.STTCHHHHHHHHHHCHCC.TCECEEECCTTHHHH.HHCT-SSSSEEEC CS
  Thioredoxin_3   6 lgpg.CakCpklekavkeaaaek.gikaevekvtdfeei.ekygVmsvPalvi 55 
                    +g g C++C+ +  +v+ +a+ + ++ +  +++ +  e+ e y++++vP+ v+
     KOO21580.1 340 FGAGwCKNCKSILPFVETLATALpDVAFATVDIDEAGELvEAYQITAVPHFVV 392
                    47778******************77*************************965 PP

>> OST3_OST6  OST3 / OST6 family, transporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.0   2.9e-06    0.0057      46     106 ..     345     397 ..     319     421 .. 0.78

  Alignments for each domain:
  == domain 1  score: 16.0 bits;  conditional E-value: 2.9e-06
   OST3_OST6  46 CelCrefepefelvakswrkdekskskklfFakvdfdegkdvFqklglnsaPhlllfppkk 106
                 C+ C+ + p +e++a +          ++ Fa+vd+de+ ++++ ++++ +Ph+++ +   
  KOO21580.1 345 CKNCKSILPFVETLATALP--------DVAFATVDIDEAGELVEAYQITAVPHFVVLKGGA 397
                 6666666666666665543........568**************************98733 PP

>> Glyoxalase_6  Glyoxalase-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.7   0.0      0.22   4.3e+02      11      29 ..      29      53 ..      21      82 .. 0.76
   2 !   12.0   0.0   0.00014      0.29       4     107 .]     153     272 ..     150     272 .. 0.78

  Alignments for each domain:
  == domain 1  score: 1.7 bits;  conditional E-value: 0.22
  Glyoxalase_6 11 alaaFwaaalgweveree......a 29
                     +F++ ++g++v r+e      +
    KOO21580.1 29 NSLRFYELVFGFRVLRHEefesgcE 53
                  5679**********99985544441 PP

  == domain 2  score: 12.0 bits;  conditional E-value: 0.00014
  Glyoxalase_6   4 ldaadpaalaaFwaaalgwevereeaaledpegvgpaaedaatllfqrvpepaknrvHldl.avedld.....................aevarlva 78 
                   l  +d aa  ++w+++lg++v +++        +g  a+ + +l ++ + e    + Hl +  v d +                      e+a++  
    KOO21580.1 153 LRSTDLAATKQYWCDVLGMTVFPTP--------AGCDAGHKSSLTVGWAAE----QTHLQFiDVGDSApmdhalasgrianscravypfYEAAEASG 237
                   667899999****************........222333344566666666....467777666555456667777778888888888888999999 PP

  Glyoxalase_6  79 lGArvlreprdgthgr......vlaDPeGneFcvv 107
                    G  + ++   +t+g+      +laDP+G e c v
    KOO21580.1 238 KGSIMNKPITLPTPGKadvvvtILADPDGYEICFV 272
                   9**99999999999999999999*******99975 PP

>> Thioredoxin_2  Thioredoxin-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.0   0.1   2.7e-05     0.053       7      98 ..     335     404 ..     329     412 .. 0.83

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 2.7e-05
  Thioredoxin_2   7 pvlvvftdpdCpyCkklkkelkelddvtvrvllfplkpsfepkavaiwcakekkkafkdieenvelarkygvrgtPtivfldgkeivarlpG 98 
                     v+++f + +C +Ck +   +++l   t         p++ ++ v+i+ a e              +++y+++++P +v+l g  +v++++G
     KOO21580.1 335 VVVLDFGAGWCKNCKSILPFVETL--AT-------ALPDVAFATVDIDEAGEL-------------VEAYQITAVPHFVVLKGGAKVDEYVG 404
                    6899999*********99999999..22.......348888999999988876.............599********999999978888887 PP

>> DIM1  Mitosis protein DIM1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   0.00016      0.32       5      75 ..     318     388 ..     314     395 .. 0.86

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00016
                 E-SHHHHHHHHHH-SSSEEEEEEE-TT-HHHHHHHHHHHHHHHHTTTTEEEEEEETTT--TTSCCCTT-.SS CS
        DIM1   5 LetkeevdqailseeerlvviRFGrdedaeClklDelLakiaeklknfaviylvdidevpdfnkmyele.dp 75 
                 +++  +v +   s  + +vv+ FG  + ++C ++  +++  a++l  +a +++vdide  ++++ y+++  p
  KOO21580.1 318 VTESSQVSSLAASSATGVVVLDFGAGWCKNCKSILPFVETLATALPDVA-FATVDIDEAGELVEAYQITaVP 388
                 56677888888899999****************************9976.799**************99555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (422 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       426  (0.0237604); expected 358.6 (0.02)
Passed bias filter:                      390  (0.0217525); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.50u 0.26s 00:00:00.76 Elapsed: 00:00:00.43
# Mc/sec: 2937.93
//
Query:       KOO21581.1  [L=476]
Description: Alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.9e-59  201.5   0.0    2.7e-59  201.1   0.0    1.1  1  GNT-I            GNT-I family
    0.00036   19.3   2.9    0.00053   18.7   2.9    1.2  1  Glyco_transf_18  Glycosyltransferase family 18
    0.00053   19.9   0.0     0.0042   17.0   0.0    2.0  1  Glyco_tranf_2_3  Glycosyltransferase like family 2


Domain annotation for each model (and alignments):
>> GNT-I  GNT-I family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  201.1   0.0   4.5e-63   2.7e-59      91     396 ..      23     334 ..      11     364 .. 0.81

  Alignments for each domain:
  == domain 1  score: 201.1 bits;  conditional E-value: 4.5e-63
       GNT-I  91 akdviavlvlacsradavrrtvekllkyrpsaekfPlivsqdcsneevkkevlsygdkvtyikhldlesiavePderkltayykiarhyklaldqvfvk 189
                  ++  a++v++ +r d+ rr+++ ll   p  e+f l+vs d++  +v+++++++g +v+ +    + + +  P+       yki++h+klal+  ++k
  KOO21581.1  23 CMARPAIVVMSHNRPDMTRRCLKLLLS-LPLIEHFTLYVSEDAGSVDVQQAAKEFGGAVKEVF--SYPPTHPTPGTFSSRPMYKISQHFKLALEATLTK 118
                 567779***************987776.599***************************98764..5677777899999999****************** PP

       GNT-I 190 kkfsrviileddleiapdffdyfeataslldrdksllavsaWndnGkkqfvdasapealyrsdffpGlGWllskktWaelePkWPkaf...WddWlrlk 285
                 +++s ++++eddl ++pdf+  f a+a ll +d+sl++vsaWnd G  ++  +  ++ l r+d+fpGlGW++s+++W+el  kWP a    Wd W+rl 
  KOO21581.1 119 RGHSHAVMIEDDLLLSPDFLRLFWASAWLLRADRSLWCVSAWNDQGFPHTARS--ASRLQRTDYFPGLGWMISADIWHELRDKWPEAAttgWDHWMRLS 215
                 **********************************************9999888..99****************************985556******** PP

       GNT-I 286 errkgrqfirPeisrtmsfGkkGsskGqff..sqylekiklndktvdfkkldlsylleenyakkfsaevkeakelqvedvvlkalk...........ek 371
                    +gr+++ Pei r     ++ ss+G     +  +e    +++ vd    dlsyll++ y+k ++a v++a++l+   +   a++            k
  KOO21581.1 216 TTTRGRECVVPEINRS----RHASSHGTNVvdNTPFERFTFEKQGVDS-FGDLSYLLQAPYEKVVHAAVEGAQQLEWPTAWGGATDkeaalpwmarlPK 309
                 **************97....5566666543114457888899999984.46***********************9865543332221111222222233 PP

       GNT-I 372 gdvrvqykdqvdferiakklgiled 396
                 +   +    + +++++ak lgi e+
  KOO21581.1 310 ERASLLLYTREEYRQLAKPLGIWEE 334
                 3333444456666666666666666 PP

>> Glyco_transf_18  Glycosyltransferase family 18
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.7   2.9   8.9e-08   0.00053     466     558 .]     373     469 ..     358     469 .. 0.83

  Alignments for each domain:
  == domain 1  score: 18.7 bits;  conditional E-value: 8.9e-08
  Glyco_transf_18 466 PlsalrvlkaeegqsCkeaCqekelvCepaffkllnkkealarlevkc.estesevnhlfPayseke.....reCllqsdalLfsCagseeklr 553
                      P + ++++ ae+g sC  aC++++  C+ +  +  n+ +a+   ++ c ++  ++v   +Pay+++      ++Cl+ sd  +  Ca+  +k+r
       KOO21581.1 373 PPKGMQTVAAEAGVSCDVACRQAGARCDMKTLEWGNSCAAM-AAHFGCeRGCGHQVGPELPAYAASPdldtyQQCLI-SDIAISQCAAGYAKTR 464
                      66789**********************************99.67788834667888888999997651111155654.6888999********* PP

  Glyco_transf_18 554 rlCPC 558
                      rlC C
       KOO21581.1 465 RLCTC 469
                      ***99 PP

>> Glyco_tranf_2_3  Glycosyltransferase like family 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.0   0.0   7.1e-07    0.0042       5     195 ..      28     215 ..      25     250 .. 0.65

  Alignments for each domain:
  == domain 1  score: 17.0 bits;  conditional E-value: 7.1e-07
  Glyco_tranf_2_3   5 avlVptfneedvlgevlesllaqeypr.vevvvvvdesdaetlevaeelaaalpdvrvrvvvnarnlgstgks.ralnealravk......... 87 
                      a++V + n++d  +++l  ll+ + ++ + ++v  d ++ ++ + a+e+  a + v    +++++ ++++++s r ++   +++k         
       KOO21581.1  28 AIVVMSHNRPDMTRRCLKLLLSLPLIEhFTLYVSEDAGSVDVQQAAKEFGGAVKEV--FSYPPTH-PTPGTFSsRPMYKISQHFKlaleatltk 118
                      799*******************8864447777777777777666666666666543..4556677.6666665156677667766666666766 PP

  Glyco_tranf_2_3  88 ..sdlvllvDdDtvvePdtlkrllqffltpkvgavgtpvfllnrstl..vsalgalefaerhlrflaarralgvltlnGsgslirrevlkeleg 177
                        + + ++++dD +++Pd+l+ + + +            +l+ +++l  vsa+++  f ++     +a+r  +++++ G g +i ++++ el++
       KOO21581.1 119 rgHSHAVMIEDDLLLSPDFLRLFWASA-----------WLLRADRSLwcVSAWNDQGFPHTAR---SASRLQRTDYFPGLGWMISADIWHELRD 198
                      7777***************99855544...........2223344443455555544333333...2223333344445666666666666654 PP

  Glyco_tranf_2_3 178 ldplflltdDyelglrlr 195
                        p    t +++ ++rl 
       KOO21581.1 199 KWP-EAATTGWDHWMRLS 215
                      333.45555555555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (476 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       308  (0.0171789); expected 358.6 (0.02)
Passed bias filter:                      245  (0.013665); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.49u 0.26s 00:00:00.75 Elapsed: 00:00:00.41
# Mc/sec: 3472.60
//
Query:       KOO21582.1  [L=180]
Description: radial spoke head 1-like protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      2e-23   80.8  31.9    9.2e-06   25.3   2.1    5.2  5  MORN      MORN repeat


Domain annotation for each model (and alignments):
>> MORN  MORN repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.8   0.1   6.5e-09   0.00012       1      22 [.       5      27 ..       5      28 .. 0.97
   2 !   16.8   1.0   2.6e-07    0.0046       1      22 [.      29      50 ..      29      51 .. 0.95
   3 !   19.7   0.5     3e-08   0.00054       1      23 []      52      74 ..      52      74 .. 0.95
   4 !   15.3   3.9   7.5e-07     0.013       1      16 [.      75      90 ..      75      91 .. 0.96
   5 !   25.3   2.1   5.1e-10   9.2e-06       1      21 [.      99     119 ..      99     121 .. 0.97

  Alignments for each domain:
  == domain 1  score: 21.8 bits;  conditional E-value: 6.5e-09
        MORN  1 YeGeW.knGkrhGkGvytwpdGd 22
                YeG++   G+r+G+G++t ++G+
  KOO21582.1  5 YEGQYnEAGQREGQGKLTLANGS 27
                **********************7 PP

  == domain 2  score: 16.8 bits;  conditional E-value: 2.6e-07
        MORN  1 YeGeWknGkrhGkGvytwpdGd 22
                YeGe+k +  hG G+    +Gd
  KOO21582.1 29 YEGEFKADEYHGLGRKMDKNGD 50
                ***************9999997 PP

  == domain 3  score: 19.7 bits;  conditional E-value: 3e-08
        MORN  1 YeGeWknGkrhGkGvytwpdGdr 23
                +eGe+  G +hG G++++++Gd+
  KOO21582.1 52 FEGEFCSGVMHGEGTMWYASGDV 74
                79*******************96 PP

  == domain 4  score: 15.3 bits;  conditional E-value: 7.5e-07
        MORN  1 YeGeWknGkrhGkGvy 16
                Y G+W++G+  G+Gvy
  KOO21582.1 75 YKGTWQHGLYSGHGVY 90
                9**************9 PP

  == domain 5  score: 25.3 bits;  conditional E-value: 5.1e-10
        MORN   1 YeGeWknGkrhGkGvytwpdG 21 
                 Y+GeWk+G r+GkG+ t+ dG
  KOO21582.1  99 YSGEWKQGVREGKGIKTFGDG 119
                 9*******************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (180 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       234  (0.0130515); expected 358.6 (0.02)
Passed bias filter:                      184  (0.0102627); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.23s 00:00:00.60 Elapsed: 00:00:00.38
# Mc/sec: 1430.70
//
Query:       KOO21583.1  [L=545]
Description: hypothetical protein Ctob_000540 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    6.7e-15   53.7   0.8    0.00011   21.9   0.2    3.7  3  EF-hand_6   EF-hand domain
    3.9e-14   51.0   1.8    0.00099   18.5   0.0    3.6  3  EF-hand_1   EF hand
    9.6e-11   41.4   1.3      0.019   14.8   0.1    3.4  3  EF-hand_8   EF-hand domain pair
    9.1e-10   38.9   2.6    6.6e-05   23.3   1.8    2.9  2  EF-hand_7   EF-hand domain pair
    1.4e-07   30.7   3.6      0.036   13.6   0.3    3.6  3  EF-hand_5   EF hand
    0.00039   20.7   0.4       0.82   10.1   0.1    2.4  2  EF-hand_14  EF-hand domain


Domain annotation for each model (and alignments):
>> EF-hand_6  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.0   2.8e-06    0.0082       4      28 ..     318     342 ..     315     351 .. 0.88
   2 !   11.8   0.1   6.1e-05      0.18       5      25 ..     394     414 ..     392     422 .. 0.92
   3 !   21.9   0.2   3.6e-08   0.00011       3      28 ..     497     522 ..     495     536 .. 0.89

  Alignments for each domain:
  == domain 1  score: 16.0 bits;  conditional E-value: 2.8e-06
   EF-hand_6   4 eaFklfDkdgdGkidaeElrkalrk 28 
                 e F  +D dg+G ++ +E+r a+++
  KOO21583.1 318 ERFASWDADGSGALSESEFREAMTH 342
                 6799*******************96 PP

  == domain 2  score: 11.8 bits;  conditional E-value: 6.1e-05
   EF-hand_6   5 aFklfDkdgdGkidaeElrka 25 
                 +F++fD dg G+i + E++++
  KOO21583.1 394 VFDEFDADGGGTIATTEFMAV 414
                 7*****************985 PP

  == domain 3  score: 21.9 bits;  conditional E-value: 3.6e-08
   EF-hand_6   3 reaFklfDkdgdGkidaeElrkalrk 28 
                 +++F+l+D d++G i  +E++k+l++
  KOO21583.1 497 DALFDLWDGDRSGRIELDEFQKHLKQ 522
                 689*********************96 PP

>> EF-hand_1  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.5   0.0   3.3e-07   0.00099       4      28 ..     318     342 ..     315     343 .. 0.90
   2 !   11.6   0.0   5.5e-05      0.16       5      25 ..     394     414 ..     391     417 .. 0.90
   3 !   18.1   0.6   4.4e-07    0.0013       1      27 [.     495     521 ..     495     523 .. 0.92

  Alignments for each domain:
  == domain 1  score: 18.5 bits;  conditional E-value: 3.3e-07
                 HHHHHHTTTSSSEEEHHHHHHHHHH CS
   EF-hand_1   4 eiFrefDkDgdGkIdfeEfkellkk 28 
                 e F+  D Dg+G ++ +Ef+e++++
  KOO21583.1 318 ERFASWDADGSGALSESEFREAMTH 342
                 679999*****************97 PP

  == domain 2  score: 11.6 bits;  conditional E-value: 5.5e-05
                 HHHHHTTTSSSEEEHHHHHHH CS
   EF-hand_1   5 iFrefDkDgdGkIdfeEfkel 25 
                 +F+efD Dg G+I   Ef+++
  KOO21583.1 394 VFDEFDADGGGTIATTEFMAV 414
                 8*****************986 PP

  == domain 3  score: 18.1 bits;  conditional E-value: 4.4e-07
                 HHHHHHHHHTTTSSSEEEHHHHHHHHH CS
   EF-hand_1   1 elkeiFrefDkDgdGkIdfeEfkellk 27 
                 +++ +F++ D D++G+I+++Ef++ lk
  KOO21583.1 495 DVDALFDLWDGDRSGRIELDEFQKHLK 521
                 5899*******************9887 PP

>> EF-hand_8  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.7   0.0    0.0005       1.5      36      54 ..     324     342 ..     321     343 .. 0.94
   2 !   14.8   0.1   6.3e-06     0.019      27      53 ..     390     416 ..     388     417 .. 0.91
   3 !   14.7   0.2   7.1e-06     0.021       7      48 ..     477     516 ..     474     521 .. 0.90

  Alignments for each domain:
  == domain 1  score: 8.7 bits;  conditional E-value: 0.0005
   EF-hand_8  36 DtdgdGkisfeEFcvller 54 
                 D dg+G++s  EF + +++
  KOO21583.1 324 DADGSGALSESEFREAMTH 342
                 99*************9987 PP

  == domain 2  score: 14.8 bits;  conditional E-value: 6.3e-06
   EF-hand_8  27 evdilfrefDtdgdGkisfeEFcvlle 53 
                 +++ +f+efD dg G+i  +EF+++++
  KOO21583.1 390 ACTFVFDEFDADGGGTIATTEFMAVAV 416
                 6999*******************9875 PP

  == domain 3  score: 14.7 bits;  conditional E-value: 7.1e-06
   EF-hand_8   7 reelrrilrilglkk...glseeevdilfrefDtdgdGkisfeEF 48 
                 re++++     g k+   +  + +vd+lf++ D d++G+i ++EF
  KOO21583.1 477 REDFHK-----GVKMagvDARAVDVDALFDLWDGDRSGRIELDEF 516
                 899999.....9999977777888********************9 PP

>> EF-hand_7  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.6   0.0   7.5e-08   0.00023       3      68 ..     315     413 ..     313     416 .. 0.74
   2 !   23.3   1.8   2.2e-08   6.6e-05       5      69 ..     392     519 ..     387     521 .. 0.87

  Alignments for each domain:
  == domain 1  score: 21.6 bits;  conditional E-value: 7.5e-08
   EF-hand_7   3 klkeaFkelDtdgdgyldkeellrllrkifqga...............................gegsklsdee............lellfkefDtdkd 58 
                 +l e+F + D dg+g l+++e+++++++  + +                                        e               +f+efD d+ 
  KOO21583.1 315 VLGERFASWDADGSGALSESEFREAMTH--TVFprlmagrlpetpaeekallealikedeefegY--------EevsgsysafvaaCTFVFDEFDADGG 403
                 6789********************7774..23356777778888877777777777444443321........233444445555599*********** PP

   EF-hand_7  59 GvisfdEFlk 68 
                 G+i  +EF++
  KOO21583.1 404 GTIATTEFMA 413
                 ********87 PP

  == domain 2  score: 23.3 bits;  conditional E-value: 2.2e-08
   EF-hand_7   5 keaFkelDtdgdgyldkeellr................llrkifqga...............................................gegsk 40 
                   +F+e+D dg g +  +e++                 l+rk+ +g                                                  g++
  KOO21583.1 392 TFVFDEFDADGGGTIATTEFMAvavrdaiarkgdrlidLFRKLADGQekarkdkeriaaardkdmfdtsyerfgkdyvppppgimredfhkgvkMAGVD 490
                 568******************99888888888888888888877777************************************9999997666644444 PP

   EF-hand_7  41 lsdeelellfkefDtdkdGvisfdEFlkl 69 
                  +   +++lf+ +D d++G+i +dEF+k 
  KOO21583.1 491 ARAVDVDALFDLWDGDRSGRIELDEFQKH 519
                 45566*********************986 PP

>> EF-hand_5  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.0   0.0   7.9e-05      0.24       9      23 ..     324     338 ..     316     340 .. 0.86
   2 !    5.1   0.1    0.0056        17       4      23 ..     394     413 ..     394     415 .. 0.83
   3 !   13.6   0.3   1.2e-05     0.036       2      23 ..     497     518 ..     496     521 .. 0.87

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 7.9e-05
                 -SS-SSCE-HHHHHH CS
   EF-hand_5   9 DlNgDGkIskeELkt 23 
                 D++g+G +s +E+++
  KOO21583.1 324 DADGSGALSESEFRE 338
                 9************97 PP

  == domain 2  score: 5.1 bits;  conditional E-value: 0.0056
                 HHHHH-SS-SSCE-HHHHHH CS
   EF-hand_5   4 tFqaiDlNgDGkIskeELkt 23 
                 +F+++D++g G+I   E+++
  KOO21583.1 394 VFDEFDADGGGTIATTEFMA 413
                 6********99997777766 PP

  == domain 3  score: 13.6 bits;  conditional E-value: 1.2e-05
                 HHHHHHH-SS-SSCE-HHHHHH CS
   EF-hand_5   2 kdtFqaiDlNgDGkIskeELkt 23 
                 +++F+  D +++G+I  +E+++
  KOO21583.1 497 DALFDLWDGDRSGRIELDEFQK 518
                 5689999*************98 PP

>> EF-hand_14  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.1   0.1   0.00027      0.82       4      70 ..     393     459 ..     391     463 .. 0.93
   2 !    8.3   0.0   0.00098       2.9       3      37 ..     497     531 ..     496     541 .. 0.90

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.00027
  EF-hand_14   4 llfdlfkdeetdklsvakllkaLaetGirkdDpRLkellkklkkvekekseaeesetleldretFkk 70 
                 ++fd f+ ++ ++++  +++++     i ++  RL +l++kl + +++  +++e   +  d+++F  
  KOO21583.1 393 FVFDEFDADGGGTIATTEFMAVAVRDAIARKGDRLIDLFRKLADGQEKARKDKERIAAARDKDMFDT 459
                 69**********************************************9999999999999999975 PP

  == domain 2  score: 8.3 bits;  conditional E-value: 0.00098
  EF-hand_14   3 dllfdlfkdeetdklsvakllkaLaetGirkdDpR 37 
                 d+lfdl++ + ++++++ ++ k+L++ G   + +R
  KOO21583.1 497 DALFDLWDGDRSGRIELDEFQKHLKQDGAAVNSLR 531
                 89*************************98777665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (545 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       395  (0.0220313); expected 358.6 (0.02)
Passed bias filter:                      291  (0.0162307); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.49u 0.26s 00:00:00.75 Elapsed: 00:00:00.40
# Mc/sec: 4129.16
//
Query:       KOO21584.1  [L=152]
Description: hypothetical protein Ctob_000545 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
  ------ inclusion threshold ------
       0.12   12.3   1.5       0.16   11.8   1.5    1.3  1  Homoserine_dh  Homoserine dehydrogenase
        3.4    6.1   6.6          4    5.8   6.6    1.0  1  Herpes_UL25    Herpesvirus UL25 family


Domain annotation for each model (and alignments):
>> Homoserine_dh  Homoserine dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   1.5   1.8e-05      0.16      70     173 .]      37     146 ..       2     146 .. 0.72

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 1.8e-05
                    HHHHHHHHCTTT--GGGSEE--STTS-HHHHHHHHCTTEEEEEEEEE......CEEEEEEEEEETTSGGGHSSST-EEEEEEESSSEEEEEEES-S CS
  Homoserine_dh  70 lailarlafgleveledvevegiskltaedikeakeegkvlklvasa......vearVkpelvpkshplasvkgsenavlvetdrlgelviqGpga 159
                    + + a +  ++e+  +  e+  +++l++e+ +  ++ ++ ++ va++       ea+ + ++ p+s p  + + +  av  e+++  ++  +G+  
     KOO21584.1  37 IRMQALETAEAEIARDRAELALLRRLREENRQLISHSQQLIRRVAALsaraveAEAEAEAAKAPNSAPTIKEQRAAAAVGAEAEARASTQASGAAP 132
                    333344555778888888888899***********9999*****9988888444677777777777777777777777777777777788888888 PP

                    SHHHHHHHHHHHHH CS
  Homoserine_dh 160 GaepTAsavlsDll 173
                    Ga   A + l+D++
     KOO21584.1 133 GATGLALGHLEDVI 146
                    88877888888875 PP

>> Herpes_UL25  Herpesvirus UL25 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.8   6.6   0.00045         4      33     128 ..      35     128 ..      18     138 .. 0.65

  Alignments for each domain:
  == domain 1  score: 5.8 bits;  conditional E-value: 0.00045
                  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--EE........ CS
  Herpes_UL25  33 reealeasreevevlevkkralraeLdnlaqkavalaeeierrlkevEellekiaeleaaaaaeeaaaarpplspssaspltavasaeevgkgkes 128
                  ++ +++a  e  e++ ++ ra  a L++l++++ +l ++ ++ +++v +l ++++e+ea a+a +a+   +p+  ++  ++   a+ae+ + ++ s
   KOO21584.1  35 IQIRMQA-LETAEAEIARDRAELALLRRLREENRQLISHSQQLIRRVAALSARAVEAEAEAEAAKAPNS-APTIKEQRAAAAVGAEAEARASTQAS 128
                  4444444.3445666667777777788999888888888888888888888888888444444444433.55555555555666666665555554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (152 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1297  (0.0723409); expected 358.6 (0.02)
Passed bias filter:                      532  (0.0296726); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.40u 0.25s 00:00:00.65 Elapsed: 00:00:00.39
# Mc/sec: 1173.55
//
Query:       KOO21585.1  [L=887]
Description: hypothetical protein Ctob_000544 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (887 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      3031  (0.169056); expected 358.6 (0.02)
Passed bias filter:                      426  (0.0237604); expected 358.6 (0.02)
Passed Vit filter:                       160  (0.00892409); expected 17.9 (0.001)
Passed Fwd filter:                        46  (0.00256568); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 1.92u 0.39s 00:00:02.31 Elapsed: 00:00:00.59
# Mc/sec: 4520.51
//
Query:       KOO21586.1  [L=2256]
Description: nxn protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    7.1e-15   54.1   0.2    6.7e-14   51.0   0.2    2.5  2  DUF3645        Protein of unknown function (DUF3645)
    6.6e-11   42.4   0.0    1.5e-10   41.3   0.0    1.6  1  Thioredoxin_8  Thioredoxin-like
    1.1e-05   25.7   8.1    1.1e-05   25.7   8.1    2.0  2  C1_2           C1 domain
  ------ inclusion threshold ------
        2.1    8.5   6.4       0.26   11.5   1.7    1.9  2  FYVE           FYVE zinc finger


Domain annotation for each model (and alignments):
>> DUF3645  Protein of unknown function (DUF3645)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.0   0.2   1.5e-17   6.7e-14       1      32 [.       2      33 ..       2      34 .. 0.96
   2 ?   -0.2   0.0      0.15   6.6e+02       2      11 ..     532     544 ..     531     545 .. 0.79

  Alignments for each domain:
  == domain 1  score: 51.0 bits;  conditional E-value: 1.5e-17
     DUF3645  1 dpsRtllAVPYrAKDvPserSEFsHpDvvIvL 32
                ++sR +lA+P+ +KDvPs+ SEF+HpDv+I+L
  KOO21586.1  2 PRSRYKLAIPFLGKDVPSPASEFAHPDVIIGL 33
                589***************************98 PP

  == domain 2  score: -0.2 bits;  conditional E-value: 0.15
     DUF3645   2 psR...tllAVPY 11 
                 ++R   + lAVP+
  KOO21586.1 532 QRRgamKWLAVPF 544
                 66788889****9 PP

>> Thioredoxin_8  Thioredoxin-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.3   0.0   3.4e-14   1.5e-10       1      94 [.     484     574 ..     484     575 .. 0.88

  Alignments for each domain:
  == domain 1  score: 41.3 bits;  conditional E-value: 3.4e-14
                    .SEEEEEE--SSSHHHHHHHHHHHHHHHHHHHTTSEEEEEEE-SS-HHHHHHHGGGS-TTSEE.EE-TT-.HHHHTT-S--TT.-SEEEEE-TT-B CS
  Thioredoxin_8   1 gkvvlLyfgaswcppckaftpklkelyeklkkkkkveivyvsldkkeeefekylkknkkpwlsvpfddkk.rnklkkkynvka.iPtlvvldknge 94 
                    +kv++Lyf a + +++ +  + l+ely+k      +e+vyvsl  ++e++ + +  +  +wl+vpf+  + r++l++++++++    lv+l++ ge
     KOO21586.1 484 NKVIGLYFEAANNRSS-DLFSALQELYDKNV--SSFELVYVSLCDSQEAYDQRRGAM--KWLAVPFSHVQrRQQLAEQFEMSSeSNALVLLKSTGE 574
                    79********876665.566899******98..9***********************..*********75599*******9985677777777776 PP

>> C1_2  C1 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.2       1.2   5.6e+03       7      25 ..     996    1015 ..     994    1020 .. 0.73
   2 !   25.7   8.1   2.4e-09   1.1e-05       1      47 []    1573    1618 ..    1573    1618 .. 0.89

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 1.2
        C1_2    7 Ltls.kgedssesfnCsaCg 25  
                  Ltl+ ++e+    + C++C 
  KOO21586.1  996 LTLEgENEEAPWLKACRCCF 1015
                  677756666777799***95 PP

  == domain 2  score: 25.7 bits;  conditional E-value: 2.4e-09
        C1_2    1 psHpHpLtlskgedssesfnCsaCgrk..idgff.YsCseCdfslhvrCa 47  
                  p H+H L+++    ++++f C+ C  +  + g + Y Cs Cdf  +  Ca
  KOO21586.1 1573 PQHEHILRFH---RRDQRFVCDMCNSSfsGGG-HtYFCSACDFDACLACA 1618
                  67********...9*************74444.36**************8 PP

>> FYVE  FYVE zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.0   0.2       3.8   1.7e+04      58      63 ..    1010    1015 ..     999    1018 .. 0.59
   2 ?   11.5   1.7   5.8e-05      0.26       8      52 ..    1586    1630 ..    1580    1659 .. 0.85

  Alignments for each domain:
  == domain 1  score: -4.0 bits;  conditional E-value: 3.8
                  E-HHHH CS
        FYVE   58 vCkeCl 63  
                   C+ C+
  KOO21586.1 1010 ACRCCF 1015
                  333333 PP

  == domain 2  score: 11.5 bits;  conditional E-value: 5.8e-05
                  --SB-TTT--B--SSS--EE-TTT--EE-STTS-EEE.EEGGGTE CS
        FYVE    8 evkkCeiCakkFsllrrrhhCrlCGkvvCekCssklvallekeae 52  
                  +   C++C+++Fs     + C +C    C +C sk+++++ k+++
  KOO21586.1 1586 QRFVCDMCNSSFSGGGHTYFCSACDFDACLACASKFFPQPGKSQS 1630
                  5567********************************999855444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (2256 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       678  (0.0378158); expected 358.6 (0.02)
Passed bias filter:                      476  (0.0265492); expected 358.6 (0.02)
Passed Vit filter:                        55  (0.00306766); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 1.11u 0.32s 00:00:01.43 Elapsed: 00:00:00.49
# Mc/sec: 13711.04
//
Query:       KOO21587.1  [L=679]
Description: protein kinase wee1 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    5.3e-42  144.0   0.0    7.1e-42  143.6   0.0    1.2  1  Pkinase      Protein kinase domain
    5.5e-28   98.0   0.0    7.7e-28   97.5   0.0    1.2  1  Pkinase_Tyr  Protein tyrosine kinase
  ------ inclusion threshold ------
      0.015   15.2   0.1      0.032   14.2   0.1    1.6  1  APH          Phosphotransferase enzyme family
       0.03   13.9   0.3       0.24   10.9   0.0    2.0  2  RIO1         RIO1 family
       0.18   11.4   0.0       0.29   10.8   0.0    1.2  1  PIP49_C      Protein-kinase domain of FAM69


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  143.6   0.0     2e-45   7.1e-42       6     260 ..     397     659 ..     392     662 .. 0.83

  Alignments for each domain:
  == domain 1  score: 143.6 bits;  conditional E-value: 2e-45
                 EEEEESSEEEEEEEETTT.TEEEEEEEEECHCHCHHHHHHHHHHHHHHHHHS.CTTB--EEEEEEESSEEEEEEE--TTEBHHHHHH...HHSS-..-H CS
     Pkinase   6 klGeGsfGkVykaveket.gkivAvKkikkekakkkkekkvlrEikilkklk.hpnivrlyevfeekdelylvleyveggeladlle...rkgsl..se 97 
                  lG+Gsf+ Vy ++++ + +   AvK+ +k  ++  ++ k+++E+++ ++l  h niv++y +++e++++y+++e++ +g+l d+l+   ++  l  +e
  KOO21587.1 397 LLGRGSFADVYVVFHNYDpSTRKAVKVSNKAFRSRGERAKYVHEVELANELGtHTNIVEYYTAWQEDQKFYMLMELCGNGTLRDHLRregAQLRLpdKE 495
                 69***********9875526789****************************************************************554333342245 PP

                 HHHHHHHHHHHHHHHHHHHTTEE-SS-SGGGEEEETTTEEEE-SGTTSEESSSSCSBCTTTSCGGGS-HHHHTTSCBSHHHHHHHHHHHHHHHHHSS-S CS
     Pkinase  98 eeakkiakqilegleylHskgiiHrDlKpeNiLidekgelKitDFGlakelessskltsfvgtseYlAPEvlkeneyskkvDvWslGvilyelltgkpp 196
                 + + +i+ ++++gl ++H ++iiH+DlKp+NiLi+ +g +Ki+D+Gla+ +++    + + g+  Yl+  +l+    s  +D++slG++lye+++g+ +
  KOO21587.1 496 SAVWDIVLHVARGLVHMHGMRIIHCDLKPDNILISADGAFKIGDLGLATTIDQWR--EGMEGDAVYLSRDLLN-CAPSVFADIFSLGLMLYEIVSGERL 591
                 5677*************************************************98..999************4.4558889***************976 PP

                 TT.TSSHHHHHHHHHHTHHHHHHHCTSHH...HHHTTS-HHHHHHHHHHT-SSG......CCSTTHHHHHT CS
     Pkinase 197 fs.gekgkekvekeldqlekilkilgetkeklpeaseiseeakdllkkllkkdp......kkRltaeellq 260
                    ++ ++ k ++el++    l   ++t   ++ +s +s ++++l+ ++++           R+ta+e+l+
  KOO21587.1 592 PGcETPEDRKRWNELRD---PLSPDQPTVPRVQPPSPCSAHMQRLVARMMSPVAyllepgDARPTAQEVLN 659
                 54044555556666666...333334667788888888999**9999998865411111246777777766 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   97.5   0.0   2.1e-31   7.7e-28       5     208 ..     396     595 ..     392     641 .. 0.82

  Alignments for each domain:
  == domain 1  score: 97.5 bits;  conditional E-value: 2.1e-31
                  EEEEEESSEEEEEEEEETTTTSSEEEEEEEEESTTSS.HHHHHHHHHHHHHHHTS.-BTTB--EEEEEESSSSEEEEEE--TTEBHHHHHHHTCTTTS CS
  Pkinase_Tyr   5 kklGeGafGkVvegtlkgekekkevkVavKtlkeeat.eeekeelleeakimkkl.khpnivkllgvctkeepllivteyvkgGdLlkfLrkkekekl 100
                    lG+G+f++V+    +    + +++ avK+ ++  + + e+++ ++e+++ ++l  h niv+++ +  ++++ ++++e++ +G+L+++Lr++  ++l
   KOO21587.1 396 PLLGRGSFADVYVVFHN---YDPSTRKAVKVSNKAFRsRGERAKYVHEVELANELgTHTNIVEYYTAWQEDQKFYMLMELCGNGTLRDHLRRE-GAQL 489
                  579*********98877...777888899999666550556999************************************************9.8888 PP

                  BHHH....HHHHHHHHHHHHHHHHHTTEEEST-SGGGEEEEETTEEEE-STTTHEETTTSSEEEETTSSTSGGGGS-HHHHHHSEEEHHHHHHHHHHH CS
  Pkinase_Tyr 101 tlkd....llsfalqvAkGmeyLeskklvHrdlaarNvLlsenkvvkisDfGLardiekddeyvkkeeaklpvkWmapEslkekkftsksDvWsfGvl 194
                  +l d    + +++l+vA+G+ +++ ++++H dl   N+L+s +   ki+D GLa +i      + +e+ +    +++   l ++  ++ +D++s G +
   KOO21587.1 490 RLPDkesaVWDIVLHVARGLVHMHGMRIIHCDLKPDNILISADGAFKIGDLGLATTI-----DQWREGMEGDAVYLSRDLL-NCAPSVFADIFSLGLM 581
                  8776222256788999*****************************************.....3445566667789999877.5788999********* PP

                  HHHHHTTSSGTTTT CS
  Pkinase_Tyr 195 lwEiftlgespypg 208
                  l+Ei++  + p  +
   KOO21587.1 582 LYEIVSGERLPGCE 595
                  *****954455443 PP

>> APH  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   0.1   8.9e-06     0.032     144     198 ..     497     545 ..     405     551 .. 0.72

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 8.9e-06
                 HHHHHHHHHHHHHHHH--SSS-EEEE-SS-SGGGEEEC..TTEEEEE---TT-EE CS
         APH 144 lleeleeqvlaalaallpgelptvllHgDlhpgNllvdpddgrvtGviDfedagl 198
                  ++++     a+ + ++     ++++H+Dl+p+N+l+ +d g +  + D+++a++
  KOO21587.1 497 AVWDIVL-HVARGLVHM---HGMRIIHCDLKPDNILISAD-GAF-KIGDLGLATT 545
                 2333333.333334444...459***************44.333.2556666665 PP

>> RIO1  RIO1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.5   0.2     0.054   1.9e+02       2      57 ..     406     463 ..     405     479 .. 0.67
   2 ?   10.9   0.0   6.8e-05      0.24      84     156 ..     469     547 ..     463     571 .. 0.63

  Alignments for each domain:
  == domain 1  score: 1.5 bits;  conditional E-value: 0.054
                 EEEEEE..TTTEEEEEEEE-S---SS-HHHHCTTTSTTSTCG--GS-HHHHHHHHHHH CS
        RIO1   2 Vyhavs..edgkevaiKiyktstteFkkrkkyvsgekrfkdrksktnprklvklwaek 57 
                 Vy++++     +  a+K+   + ++  +r kyv++ +  ++  ++tn  +   +w+e 
  KOO21587.1 406 VYVVFHnyDPSTRKAVKVSNKAFRSRGERAKYVHEVELANELGTHTNIVEYYTAWQED 463
                 5555552223335678887777777778888888888888888899998888888874 PP

  == domain 2  score: 10.9 bits;  conditional E-value: 6.8e-05
                 EEE--EETTEEGGBHHHCG.-...HHHHHHHHHHHHHHHH..HHHHTSTEEESS-STTSEEEETT.EEEE--GTTEEETT CS
        RIO1  84 vmefigedgvaapklkdve.e...eeeaeelyeevleemr..klykeaglvHaDLSeyNvlvded.kvviIDvsQaveld 156
                 +me++g +g+   +l+    +    ++ + + + vl+  r  + ++ ++++H+DL   N+l++ d  + i D++ a+++d
  KOO21587.1 469 LMELCG-NGTLRDHLRREGaQlrlPDKESAVWDIVLHVARglVHMHGMRIIHCDLKPDNILISADgAFKIGDLGLATTID 547
                 566666.555555555544333444444444444444333114556889**************99677777888777665 PP

>> PIP49_C  Protein-kinase domain of FAM69
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0     8e-05      0.29      69     122 ..     502     555 ..     455     567 .. 0.79

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 8e-05
     PIP49_C  69 lLelveelenndpdslylcdvslenfgvsddgrlkliDldnvfiedkleeklse 122
                 +L++++ l ++   +++ cd +++n+ +s+dg +k+ Dl  ++++d+ +e ++ 
  KOO21587.1 502 VLHVARGLVHMHGMRIIHCDLKPDNILISADGAFKIGDLGLATTIDQWREGMEG 555
                 46667777776667799******************************9988765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (679 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       477  (0.0266049); expected 358.6 (0.02)
Passed bias filter:                      349  (0.0194657); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.57u 0.29s 00:00:00.85 Elapsed: 00:00:00.43
# Mc/sec: 4727.11
//
Query:       KOO21588.1  [L=446]
Description: hypothetical protein Ctob_000530 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      2e-05   24.8   0.0    0.00025   21.3   0.0    2.4  1  C2         C2 domain
     0.0002   21.6   1.9    0.00033   20.9   0.7    1.9  2  V-SNARE_C  Snare region anchored in the vesicle membrane C-te
  ------ inclusion threshold ------
      0.072   12.8   0.0       0.18   11.6   0.0    1.7  1  Fn_bind    Fibronectin binding repeat


Domain annotation for each model (and alignments):
>> C2  C2 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.3   0.0   4.2e-08   0.00025       2      92 ..     172     259 ..     171     274 .. 0.85

  Alignments for each domain:
  == domain 1  score: 21.3 bits;  conditional E-value: 4.2e-08
                 EEEEEEEEEESSSSSSTTSSCEEEEEEEEECEEEEEE-SCSSSSSSEE..EEEEEEEESCHTTSEEEEEEEEECS.......SSTEEEEEEEEEEGHHH CS
          C2   2 klevtvieAknLpnkdkkgssdpyvkvsldgkqkakTrviknslnPvW..nekftfevaeleeakLeveVfdndr.......lskddfiGkveiplstl 91 
                 +l+v+ +++ +L + d  g+sdpyv  ++ g + +  r    s    W  +e  + +v     ++L++ Vfd+d+        ++dd+iG++++ l+ +
  KOO21588.1 172 QLSVELHSGSGLMASDFDGKSDPYVAFHY-GGREVAVR----S----WlaEEASEASVGA---ETLRLVVFDEDTgtmmegfSKGDDVIGEASVALQPV 258
                 799**************************.88888888....4....6324555666665...9*****************559999********9985 PP

                 H CS
          C2  92 l 92 
                 l
  KOO21588.1 259 L 259
                 4 PP

>> V-SNARE_C  Snare region anchored in the vesicle membrane C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.9   0.7   5.5e-08   0.00033      15      63 ..     311     359 ..     302     360 .. 0.96
   2 ?   -2.0   0.0      0.76   4.6e+03      16      24 ..     437     445 ..     430     446 .] 0.80

  Alignments for each domain:
  == domain 1  score: 20.9 bits;  conditional E-value: 5.5e-08
   V-SNARE_C  15 rivdetisiGaailedLhsQretLkrarsklhnvanrlgksnsiLrsik 63 
                 r + et   Gaa+l dL +Qr +++r+ +   ++a +   +ns+L+ ++
  KOO21588.1 311 RTAVETRDTGAATLLDLEKQRHQMERIEASQAELARNMSEANSVLKDMS 359
                 7899*******************************************96 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 0.76
   V-SNARE_C  16 ivdetisiG 24 
                 ++de+++++
  KOO21588.1 437 LMDEMLQQA 445
                 79*****98 PP

>> Fn_bind  Fibronectin binding repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0     3e-05      0.18       5      26 ..     230     252 ..     228     260 .. 0.89

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 3e-05
                 XXX.XXXXXXXXXX--.B----S CS
     Fn_bind   5 iteDTqpgmSGqnggt.tieEDT 26 
                 ++eDT ++m+G++ g+ +i E +
  KOO21588.1 230 FDEDTGTMMEGFSKGDdVIGEAS 252
                 89*************99998866 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (446 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       699  (0.0389871); expected 358.6 (0.02)
Passed bias filter:                      406  (0.0226449); expected 358.6 (0.02)
Passed Vit filter:                        48  (0.00267723); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.49u 0.29s 00:00:00.78 Elapsed: 00:00:00.43
# Mc/sec: 3110.42
//
Query:       KOO21589.1  [L=422]
Description: hypothetical protein Ctob_000538 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (422 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       401  (0.022366); expected 358.6 (0.02)
Passed bias filter:                      320  (0.0178482); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.46u 0.26s 00:00:00.72 Elapsed: 00:00:00.42
# Mc/sec: 3035.41
//
Query:       KOO21590.1  [L=303]
Description: chaperone protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      1e-19   70.4   0.6    2.1e-19   69.4   0.2    1.7  2  DnaJ        DnaJ domain
    1.9e-08   33.7   1.4     0.0095   15.8   0.1    3.5  3  MORN        MORN repeat
  ------ inclusion threshold ------
      0.074   13.0   0.4       0.15   12.1   0.4    1.5  1  Fer2        2Fe-2S iron-sulfur cluster binding domain
      0.094   12.8   0.0       0.14   12.2   0.0    1.2  1  DUF617      Protein of unknown function, DUF617


Domain annotation for each model (and alignments):
>> DnaJ  DnaJ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.4   0.2   4.6e-23   2.1e-19       1      56 [.       5      60 ..       5      69 .. 0.93
   2 ?   -1.9   0.0      0.86   3.9e+03      35      50 ..      74      89 ..      66      94 .. 0.67

  Alignments for each domain:
  == domain 1  score: 69.4 bits;  conditional E-value: 4.6e-23
                HHHHHHTSSTTG-HHHHHHHHHHHHHHHSTTTSCCHHHHHHHHHHHHHHHHHHTSH CS
        DnaJ  1 dyYeiLgvskdasedeIkkaYrklalkyHPDknpkdpeaeekFkeineAyevLsdp 56
                d+Y++Lgvskda+++eIk+aYr lal++HPDknp+d+ea+++F   +eAy+ L + 
  KOO21590.1  5 DPYAVLGVSKDADAAEIKRAYRVLALQWHPDKNPDDSEAAKRFLAAKEAYQSLANG 60
                78***************************************************874 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 0.86
                CHHHHHHHHHHHHHHH CS
        DnaJ 35 kdpeaeekFkeineAy 50
                ++ e +e+F +++e  
  KOO21590.1 74 DHAETAEAFYRVQELA 89
                4457788888888755 PP

>> MORN  MORN repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.5   0.0   1.1e-05     0.051       1      23 []     117     139 ..     117     139 .. 0.96
   2 !   15.8   0.1   2.1e-06    0.0095       2      23 .]     141     162 ..     140     162 .. 0.93
   3 ?    1.6   0.1      0.07   3.1e+02       3      13 ..     165     175 ..     164     175 .. 0.89

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 1.1e-05
        MORN   1 YeGeWknGkrhGkGvytwpdGdr 23 
                 Y G+  +G++hG G ++ ++G++
  KOO21590.1 117 YVGDVEGGRPHGVGDLILANGSV 139
                 99*******************85 PP

  == domain 2  score: 15.8 bits;  conditional E-value: 2.1e-06
        MORN   2 eGeWknGkrhGkGvytwpdGdr 23 
                 +G +  G+ +G Gvy+ ++G++
  KOO21590.1 141 SGSFIAGRADGEGVYYDANGSV 162
                 79******************85 PP

  == domain 3  score: 1.6 bits;  conditional E-value: 0.07
        MORN   3 GeWknGkrhGk 13 
                 G W ++kr G+
  KOO21590.1 165 GVWIDNKRSGQ 175
                 88*******96 PP

>> Fer2  2Fe-2S iron-sulfur cluster binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.4   3.2e-05      0.15      23      73 ..     197     258 ..     177     259 .. 0.66

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 3.2e-05
                 HHHTTTTTSTTSSSSSS.SSTTEEEEEESCE.....CTT......SSSSTHHHHHTTEEEEGG CS
        Fer2  23 aeenggidipysCgggg.CgtClvevlegev.....qsd......etelegeeldegklrlaC 73 
                 ae+ +  + p++C +++ C  C+v+  + ++     + +      ++ ++++   eg+l l+C
  KOO21590.1 197 AERKKVAPAPAECMHAAeCKHCAVRFHAAHNskcrqH-SgkwmaaAPPVDWKAFPEGGLWLCC 258
                 444458999******999*******988877655432.1466666666666666666666666 PP

>> DUF617  Protein of unknown function, DUF617
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   3.1e-05      0.14      31     109 ..      10      89 ..       4     118 .. 0.80

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 3.1e-05
      DUF617  31 LavptsalvkemasglvriaLecekkkekkkkkeeke.lleepvwtvycnGrkvGyavrreaseedlavlellravsvGa 109
                 L v+ +a ++e++ +   +aL+ + +k+ ++++++k+ l  ++ ++   nG+++Gy    e+++++++  e++  v+  a
  KOO21590.1  10 LGVSKDADAAEIKRAYRVLALQWHPDKNPDDSEAAKRfLAAKEAYQSLANGKEAGYKSYDEIAKDHAETAEAFYRVQELA 89 
                 5567778889999999999***9998888877766666999***************999999988888777777766555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (303 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       627  (0.0349713); expected 358.6 (0.02)
Passed bias filter:                      434  (0.0242066); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.47u 0.27s 00:00:00.74 Elapsed: 00:00:00.43
# Mc/sec: 2100.61
//
Query:       KOO21591.1  [L=737]
Description: hypothetical protein Ctob_000529 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.7e-06   26.5   4.3    1.3e-05   25.4   4.3    1.6  1  MIB_HERC2  Mib_herc2
    0.00033   20.0   0.4     0.0011   18.3   0.1    2.1  2  EF-hand_5  EF hand
    0.00062   19.5   0.2     0.0021   17.8   0.2    2.0  1  EF-hand_6  EF-hand domain
     0.0079   15.7   0.9      0.021   14.3   0.2    2.2  2  EF-hand_1  EF hand
  ------ inclusion threshold ------
      0.051   14.0   0.1       0.23   12.0   0.1    2.1  1  EF-hand_7  EF-hand domain pair
       0.19   11.6   0.2       0.54   10.1   0.1    1.8  2  EF-hand_8  EF-hand domain pair


Domain annotation for each model (and alignments):
>> MIB_HERC2  Mib_herc2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.4   4.3   4.2e-09   1.3e-05       1      23 [.     704     726 ..     704     732 .. 0.93

  Alignments for each domain:
  == domain 1  score: 25.4 bits;  conditional E-value: 4.2e-09
   MIB_HERC2   1 GarVvRGpDWkwrdqDggegkeG 23 
                 G+rV RGpDWkw++qDgg g  G
  KOO21591.1 704 GDRVRRGPDWKWSNQDGGVGGLG 726
                 89****************99888 PP

>> EF-hand_5  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.3   0.1   3.8e-07    0.0011       2      20 ..     135     153 ..     134     156 .. 0.91
   2 ?   -2.2   0.0       1.2   3.6e+03       5      12 ..     212     219 ..     212     219 .. 0.92

  Alignments for each domain:
  == domain 1  score: 18.3 bits;  conditional E-value: 3.8e-07
                 HHHHHHH-SS-SSCE-HHH CS
   EF-hand_5   2 kdtFqaiDlNgDGkIskeE 20 
                  d+F+++D+N DG +s++E
  KOO21591.1 135 YDAFNKFDANDDGSLSFSE 153
                 689**************99 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 1.2
                 HHHH-SS- CS
   EF-hand_5   5 FqaiDlNg 12 
                 F+ +D++g
  KOO21591.1 212 FEIVDTDG 219
                 899****8 PP

>> EF-hand_6  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.8   0.2   7.2e-07    0.0021       1      26 [.     133     158 ..     133     161 .. 0.89

  Alignments for each domain:
  == domain 1  score: 17.8 bits;  conditional E-value: 7.2e-07
   EF-hand_6   1 elreaFklfDkdgdGkidaeElrkal 26 
                 +l++aF++fD ++dG+++++E+  al
  KOO21591.1 133 RLYDAFNKFDANDDGSLSFSEVWGAL 158
                 589******************86665 PP

>> EF-hand_1  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.3   0.2   7.2e-06     0.021       2      21 ..     134     153 ..     133     154 .. 0.91
   2 ?   -2.4   0.0       1.6   4.7e+03       6      13 ..     212     219 ..     212     219 .. 0.92

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 7.2e-06
                 HHHHHHHHTTTSSSEEEHHH CS
   EF-hand_1   2 lkeiFrefDkDgdGkIdfeE 21 
                 l ++F++fD + dG ++f+E
  KOO21591.1 134 LYDAFNKFDANDDGSLSFSE 153
                 5689***************9 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 1.6
                 HHHHTTTS CS
   EF-hand_1   6 FrefDkDg 13 
                 F+++D+Dg
  KOO21591.1 212 FEIVDTDG 219
                 899****8 PP

>> EF-hand_7  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.1   7.6e-05      0.23       4      25 ..     134     156 ..     133     220 .. 0.60

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 7.6e-05
   EF-hand_7   4 lkeaFkelDtdgdgyldkee.ll 25 
                 l++aF+++D ++dg+l+ +e   
  KOO21591.1 134 LYDAFNKFDANDDGSLSFSEvWG 156
                 78888888888888888888444 PP

>> EF-hand_8  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.7   0.0       3.9   1.2e+04      22      33 ..      58      69 ..      52      71 .. 0.78
   2 ?   10.1   0.1   0.00018      0.54      31      47 ..     137     153 ..     134     158 .. 0.89

  Alignments for each domain:
  == domain 1  score: -3.7 bits;  conditional E-value: 3.9
   EF-hand_8 22 glseeevdilfr 33
                ++ + e+ il+r
  KOO21591.1 58 HFKPAEINILLR 69
                49999**99997 PP

  == domain 2  score: 10.1 bits;  conditional E-value: 0.00018
   EF-hand_8  31 lfrefDtdgdGkisfeE 47 
                  f++fD ++dG +sf E
  KOO21591.1 137 AFNKFDANDDGSLSFSE 153
                 69*************99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (737 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       544  (0.0303419); expected 358.6 (0.02)
Passed bias filter:                      426  (0.0237604); expected 358.6 (0.02)
Passed Vit filter:                        48  (0.00267723); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.60u 0.27s 00:00:00.87 Elapsed: 00:00:00.42
# Mc/sec: 5237.03
//
Query:       KOO21592.1  [L=472]
Description: hypothetical protein Ctob_000535 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.5e-15   57.4   0.0    3.7e-15   56.1   0.0    1.5  1  Bestrophin  Bestrophin, RFP-TM, chloride channel


Domain annotation for each model (and alignments):
>> Bestrophin  Bestrophin, RFP-TM, chloride channel
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.1   0.0   2.1e-19   3.7e-15      11     289 ..      10     344 ..       5     352 .. 0.76

  Alignments for each domain:
  == domain 1  score: 56.1 bits;  conditional E-value: 2.1e-19
  Bestrophin  11 lkllfrwkGsvyklilrelllflllyalvvllyrleerlfellsi.ce.....lipLsfvLgFrvnavydRWweqrkllgwldkaarslarqvrgls.. 101
                 + l+fr  Gs +k    e l+ +ll++++ l+    + + +l+++        +i  ++ L Fr++++y+R+we  ++  ++ + + +  ++  +++  
  KOO21592.1  10 WMLMFRSAGSAVKESCFEGLFAALLTLILELAVP-ASYMTTLMVQpYPllpfqYI-AAITLIFRTKIAYSRYWECATASYEMGSRLGDAFTEGITFDel 106
                 5677777777777777776666666666665555.22333333332223344244.579***************9998777666665555555554456 PP

  Bestrophin 102 ..........deegrlarrtilrylvlllvlffralssrvrkr..................................fptlehlleagllteeeakile 156
                           +    l++r++++ l+l    +++al ++  +r                                  +p+ ++l   g +te+e + le
  KOO21592.1 107 intnkrqygeEGAVWLEKRRRFQALLLRRFSLMHALAMQYLRRddclknlvasdgrepnvplgagafggmeqptsraDPKWQQLEVLGGITESELASLE 205
                 66656665432445578888888999999999999988877777***************************9988888888888888999*****9999 PP

  Bestrophin 157 nkywvplqWavsllrrlaerlkelakegrikddq.alkeleeelnelraklgsleridwtpiPlvYtqvvtravylyfllallgrqfldse........ 246
                 n++ +  +    + +++ +  ++++ +g + +d   + + +++l++ +  + +  +i+ +p P  Ytq v+++++l+ l++ l   ++ +         
  KOO21592.1 206 NTPDRVGY----VFAQIMHISAQRRCDGGLGSDApLISRYWQTLSDGHLGMRQARKIEDIPFPWPYTQAVSVMTRLFTLTTPLYLAHFANCssvvgkcd 300
                 88888888....44444433344567777777777889******************************************6555444444479****** PP

  Bestrophin 247 .idlyl.PvftllqfaffffGllkvaeqlenPFGedddDlelnal 289
                   ++++ P+++++ +   ++++++va++le+P+ + ++Dl+ na+
  KOO21592.1 301 hRNWWVaPFLAFMTV-SAYVAIDAVAHALEDPYVHPPNDLPANAI 344
                 9555555*9999999.99*************************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (472 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       331  (0.0184617); expected 358.6 (0.02)
Passed bias filter:                      291  (0.0162307); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.26s 00:00:00.75 Elapsed: 00:00:00.41
# Mc/sec: 3420.07
//
Query:       KOO21593.1  [L=471]
Description: hypothetical protein Ctob_000532 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
          3    8.1   4.4       0.81    9.9   0.9    1.8  2  P68HR     P68HR (NUC004) repeat


Domain annotation for each model (and alignments):
>> P68HR  P68HR (NUC004) repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   0.9   4.5e-05      0.81      13      23 ..     317     327 ..     316     332 .. 0.80
   2 ?   -2.6   0.1      0.36   6.5e+03       8      17 ..     375     384 ..     375     384 .. 0.85

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 4.5e-05
       P68HR  13 prgnYqnGYdS 23 
                  +g+Y+n+Yd+
  KOO21593.1 317 TNGTYENTYDA 327
                 59********8 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 0.36
       P68HR   8 FragrprgnY 17 
                 F++++++ ++
  KOO21593.1 375 FKTFADAKAF 384
                 99***98776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (471 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       441  (0.024597); expected 358.6 (0.02)
Passed bias filter:                      322  (0.0179597); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.52u 0.24s 00:00:00.76 Elapsed: 00:00:00.43
# Mc/sec: 3321.21
//
Query:       KOO21594.1  [L=488]
Description: hypothetical protein Ctob_000533 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
     0.0065   15.9  14.1     0.0065   15.9  14.1    2.8  3  DUF4407     Domain of unknown function (DUF4407)


Domain annotation for each model (and alignments):
>> DUF4407  Domain of unknown function (DUF4407)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   3.3     0.097   1.7e+03     188     210 ..      72     117 ..      44     145 .. 0.43
   2 !   15.9  14.1   3.6e-07    0.0065     121     254 ..     158     291 ..     146     307 .. 0.89
   3 ?   -0.1   0.4     0.027   4.9e+02     125     162 ..     355     394 ..     341     420 .. 0.43

  Alignments for each domain:
  == domain 1  score: -2.0 bits;  conditional E-value: 0.097
     DUF4407 188 kkaqldaaqaelaelkakld.......................ata 210
                 +k+ ++ a a+ + ++a+ld                        ++
  KOO21594.1  72 AKDVAAIAIAQAQHATATLDmervemsawhaadaaelsrrmlhVSQ 117
                 3333333333333333333333333333333323332222222222 PP

  == domain 2  score: 15.9 bits;  conditional E-value: 3.6e-07
     DUF4407 121 kelkeqlaaaltaelaeleaqiaalqaeidaaearldalraeaqkeldgtkgtgttgvaGkgpaakekkaqldaaqaelaelkakld.atarlaalrae 218
                 + +++q+  + ++e+ael+a+  a+ +eid+++a   +l++++++e++    ++  + + + +aa+  ++   + q++la  ++++   +a+l++ ra+
  KOO21594.1 158 RNADQQVL-QQRDEIAELRAREFAWLREIDELRAVTGRLQEQLAAEAEAHARQRSYRLEHEQTAATLERTVRHRVQEDLAISNKEIAdLQAELQSVRAQ 255
                 33333333.489************************************9999999999999999999****************99989*********** PP

     DUF4407 219 laeleaerakeraasqaaaaaddGllarlealdrlt 254
                 +a+l ++++++ra+  +++ + + l+++ +al+r+ 
  KOO21594.1 256 YADLSRRAHEDRAQMGREQLQMTILIEKVHALHRVL 291
                 *********************************986 PP

  == domain 3  score: -0.1 bits;  conditional E-value: 0.027
     DUF4407 125 eqlaaa..ltaelaeleaqiaalqaeidaaearldalrae 162
                 +++a+   l+  +ae ea i+al+  +++ e  +++++ +
  KOO21594.1 355 ANTAQVvwLDRIVAEREAIIDALRDDFTKSEMLRRETTSQ 394
                 2222223333333333333333333333333333333222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (488 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1544  (0.0861175); expected 358.6 (0.02)
Passed bias filter:                      473  (0.0263818); expected 358.6 (0.02)
Passed Vit filter:                        51  (0.00284455); expected 17.9 (0.001)
Passed Fwd filter:                        14  (0.000780858); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.70u 0.28s 00:00:00.98 Elapsed: 00:00:00.46
# Mc/sec: 3162.14
//
Query:       KOO21595.1  [L=239]
Description: protein kinase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.3e-17   64.0   0.0    3.6e-17   62.6   0.0    1.6  1  Pkinase      Protein kinase domain
    6.4e-16   58.4   0.0    7.8e-16   58.1   0.0    1.1  1  Pkinase_Tyr  Protein tyrosine kinase
     0.0012   18.8   0.8      0.029   14.3   0.1    2.1  2  APH          Phosphotransferase enzyme family


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.6   0.0   6.1e-21   3.6e-17       1     149 [.      45     222 ..      45     237 .. 0.79

  Alignments for each domain:
  == domain 1  score: 62.6 bits;  conditional E-value: 6.1e-21
                 EEEEEEEEEESSEEEEEEEETTTTEEEEE......EEEECHCHCHHHH..HHHHHHHHHHHHHSCTTB--EEEEEEESSEEEEEEE--TTEBHHHHHHH CS
     Pkinase   1 yekleklGeGsfGkVykaveketgkivAv......Kkikkekakkkke..kkvlrEikilkklkhpnivrlyevfeekdelylvleyveggeladller 91 
                 +e+++ +G+G++G+V+ a    +    A+      K +++++ak+  +   +++rE+++l++++hp+++ l+++   ++ l+lv+ +++gg+lad+l  
  KOO21595.1  45 FEEQRLIGSGGYGRVFTADTLPSLPPEALplwlrhKPFAVKHAKSGVHdlAALQREVRVLQQCNHPYLLPLLGYSLGDEALCLVFPLMRGGSLADRLWP 143
                 678899*********99987765444443222222444444444444355789********************************************97 PP

                 HSS--HH...............HHHHHHHHHHHHHHHHHHTT......EE-SS-SGGGEEEETTTEEEE-SGTTSEESS CS
     Pkinase  92 kgslsee...............eakkiakqilegleylHskg......iiHrDlKpeNiLidekgelKitDFGlakele 149
                 k+s +e+               +  +i++q   +l ylH         ++HrD KpeNiL d++ +  ++D G+ak   
  KOO21595.1 144 KVSDPEHlrlglpaslsplmwqQRLQILSQATDALLYLHTPVpggkhaVVHRDFKPENILPDDELNAYLADTGFAKMDA 222
                 7777777888888889999987777**************643344555**************999**********9654 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.1   0.0   1.3e-19   7.8e-16       4     153 ..      48     221 ..      45     237 .. 0.88

  Alignments for each domain:
  == domain 1  score: 58.1 bits;  conditional E-value: 1.3e-19
                  EEEEEEESSEEEEEEEEET.......TTTSSEEEEEEEEESTTSSHHHHHHHHHHHHHHHTS-BTTB--EEEEEESSSSEEEEEE--TTEBHHHHHHH CS
  Pkinase_Tyr   4 gkklGeGafGkVvegtlkg.......ekekkevkVavKtlkeeateeekeelleeakimkklkhpnivkllgvctkeepllivteyvkgGdLlkfLrk 94 
                  ++ +G+G +G+V+ +               ++   avK  k++ ++   ++l +e++++++++hp ++ llg  + +e l++v+ +++gG+L + L  
   KOO21595.1  48 QRLIGSGGYGRVFTADTLPslppealPLWLRHKPFAVKHAKSGVHDL--AALQREVRVLQQCNHPYLLPLLGYSLGDEALCLVFPLMRGGSLADRLWP 143
                  6889***********9998888776655678899******8888776..9************************************************ PP

                  T.............CTTTSBHHHHHHHHHHHHHHHHHHH......HTTEEEST-SGGGEEEEETTEEEE-STTTHEET CS
  Pkinase_Tyr  95 k.............ekekltlkdllsfalqvAkGmeyLe......skklvHrdlaarNvLlsenkvvkisDfGLardi 153
                  k             + ++l  ++ l++  q  +++ yL+      ++ +vHrd    N+L +++  + ++D G a+  
   KOO21595.1 144 KvsdpehlrlglpaSLSPLMWQQRLQILSQATDALLYLHtpvpggKHAVVHRDFKPENILPDDELNAYLADTGFAKMD 221
                  9************999**********************9444444578**************************9865 PP

>> APH  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.4   0.1     0.011        63      21      76 ..      80     134 ..      72     152 .. 0.69
   2 !   14.3   0.1   4.8e-06     0.029     132     182 ..     157     206 ..     135     221 .. 0.64

  Alignments for each domain:
  == domain 1  score: 3.4 bits;  conditional E-value: 0.011
                 --EEEEEE-TT.S-HHHHHHHHHHHHHHHHTT-B--B-CTTBS-EEETTEEEEEEE- CS
         APH  21 gryvlrrnppa.raaeeirrevallrlLakagvpvPevlagdtddeeigllfaliey 76 
                 ++++++++  + +  + ++rev++l++  ++ ++   +l +  +de + l+f l+ +
  KOO21595.1  80 KPFAVKHAKSGvHDLAALQREVRVLQQ-CNH-PYLLPLLGYSLGDEALCLVFPLMRG 134
                 5899*******9999999999999999.444.2233344444555555556666655 PP

  == domain 2  score: 14.3 bits;  conditional E-value: 4.8e-06
                 HHHCCCGCCTCCHHHHHHHHHHHHHHHH--S..SS-EEEE-SS-SGGGEEEC. CS
         APH 132 atarllaselldlleeleeqvlaalaallpg..elptvllHgDlhpgNllvdp 182
                 a   l ++ +++ ++++ +q+ +al+ l  +   +++ ++H+D++p N+l d+
  KOO21595.1 157 A--SLSPLMWQQ-RLQILSQATDALLYLHTPvpGGKHAVVHRDFKPENILPDD 206
                 3..344555555.555555555555444333778****************883 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (239 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       264  (0.0147247); expected 358.6 (0.02)
Passed bias filter:                      252  (0.0140554); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.42u 0.21s 00:00:00.63 Elapsed: 00:00:00.38
# Mc/sec: 1890.05
//
Query:       KOO21596.1  [L=1449]
Description: ABC transporter [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.8e-47  160.3   0.0    3.1e-27   95.8   0.0    2.9  2  ABC_tran       ABC transporter
    8.3e-31  107.6  27.8    1.1e-19   71.2  15.4    2.5  2  ABC_membrane   ABC transporter transmembrane region
    8.2e-08   32.0   1.4       0.38   10.1   0.0    4.2  4  SMC_N          RecF/RecN/SMC N terminal domain
    1.1e-05   25.4   0.4      0.001   19.0   0.1    2.4  2  RsgA_GTPase    RsgA GTPase
    4.5e-05   23.9   0.1       0.39   11.1   0.0    2.8  2  AAA_16         AAA ATPase domain
    5.5e-05   23.2   2.6       0.19   11.8   0.6    2.8  2  MMR_HSR1       50S ribosome-binding GTPase
    0.00042   20.0   0.6       0.75    9.6   0.0    2.6  2  AAA_29         P-loop containing region of AAA domain
     0.0008   19.7   0.3        4.4    7.6   0.1    3.3  3  AAA_22         AAA domain
     0.0014   18.1   0.3       0.19   11.1   0.0    2.4  2  FtsK_SpoIIIE   FtsK/SpoIIIE family
     0.0015   18.1   0.7          1    8.8   0.1    2.4  2  AAA_7          P-loop containing dynein motor region
     0.0016   18.5   0.9       0.12   12.4   0.1    2.5  2  Dynamin_N      Dynamin family
     0.0024   17.0   0.3      0.055   12.5   0.0    2.8  3  T2SSE          Type II/IV secretion system protein
     0.0029   16.8   2.6       0.96    8.6   0.2    2.3  2  NB-ARC         NB-ARC domain
     0.0041   17.0   0.0        1.2    8.9   0.0    2.6  2  AAA_21         AAA domain, putative AbiEii toxin, Type IV TA 
     0.0048   16.7   0.0       0.96    9.1   0.0    2.2  2  AAA_15         AAA ATPase domain
     0.0092   15.8   1.9      0.061   13.1   0.8    2.5  2  DEAD           DEAD/DEAH box helicase
     0.0096   14.9   1.1       0.66    8.8   0.1    2.2  2  TrwB_AAD_bind  Type IV secretion-system coupling protein DNA-
  ------ inclusion threshold ------
      0.014   15.6   0.5        2.4    8.4   0.0    2.8  2  Roc            Ras of Complex, Roc, domain of DAPkinase
      0.019   14.7   7.9       0.73    9.5   0.0    3.3  3  AAA_30         AAA domain
      0.029   14.3   1.2        5.4    6.9   0.1    2.6  2  NACHT          NACHT domain
      0.031   14.8   0.0        1.2    9.6   0.0    2.4  2  AAA_23         AAA domain
      0.043   13.9   4.2        0.3   11.1   0.1    2.5  2  DUF87          Helicase HerA, central domain
      0.067   12.8   1.7        2.9    7.4   0.1    2.4  2  cobW           CobW/HypB/UreG, nucleotide-binding domain
      0.091   12.0   0.0        1.4    8.1   0.0    2.2  2  KAP_NTPase     KAP family P-loop domain
       0.12   12.0   0.0        1.3    8.7   0.0    2.3  2  AAA_24         AAA domain
       0.15   11.0   2.0        1.7    7.6   0.1    2.4  2  MeaB           Methylmalonyl Co-A mutase-associated GTPase Me
       0.17   12.4   0.1         15    6.1   0.0    2.7  2  AAA_18         AAA domain
       0.17   11.6   1.6          2    8.1   0.0    2.4  2  ATP_bind_1     Conserved hypothetical ATP binding protein
       0.18   12.1   1.1         16    5.9   0.0    2.7  2  AAA_19         AAA domain
       0.22   11.0   1.6       0.26   10.7   0.2    1.7  2  Pox_A32        Poxvirus A32 protein
       0.24   11.4   0.4         27    4.8   0.1    2.6  2  TsaE           Threonylcarbamoyl adenosine biosynthesis prote
        1.3    8.9   6.0         11    5.9   0.2    3.2  3  NTPase_1       NTPase


Domain annotation for each model (and alignments):
>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.2   0.0   2.6e-19   1.4e-16       6     136 ..     475     604 ..     473     605 .. 0.86
   2 !   95.8   0.0   5.5e-30   3.1e-27       1     137 []    1151    1299 ..    1151    1299 .. 0.95

  Alignments for each domain:
  == domain 1  score: 61.2 bits;  conditional E-value: 2.6e-19
                 EEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGGB-HHHCCHCEEEE-SS--S-TTSBHHHH..........HHHTCHHHHHHHSTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..........xxxxxxxxxxxxxxx RF
    ABC_tran   6 lklkegekvaivGenGaGKStLlkllagllkpteGeilldgkdlkeqeleslrkeigvlpqepqlfpeltvren..........esdeeiekalsklgl 94 
                   l+ +++va+vG+ G GKS++l +++ ++k + G++              +  +i+++pq p +++ + +ren          +++e ++  + +l++
  KOO21596.1 475 TALSTSQVVAVVGRVGVGKSSVLHAILSNMKLQTGSL-------------TVGGNIAYVPQMPWVQNLS-LRENilfglpfdeaKYKEVVHVCALELDM 559
                 578999*******************************.............789*********9999888.**********9887556666666666665 PP

                 GG...TTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTT CS
                 xx...xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  95 ke...lkdtvvksspssLSgGqkqrvalarallkkpkllllDEpt 136
                 +     + t +++++ +LSgGq+qrv+lara+  + +++llD+p 
  KOO21596.1 560 EIlpkGDRTLAGERGINLSGGQRQRVCLARAVYHDCDIVLLDNPL 604
                 553334567778888****************************97 PP

  == domain 2  score: 95.8 bits;  conditional E-value: 5.5e-30
                  EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGGB-HHHCCHCEEEE-SS--S-TTSBHHHH......HHHTCHHHHHHH CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx......xxxxxxxxxxxx RF
    ABC_tran    1 lknvslklkegekvaivGenGaGKStLlkllagllkpteGeilldgkdlkeqeleslrkeigvlpqepqlfpeltvren......esdeeiekalsk 91  
                  l++vs+++  +ekv++vG++G+GK+t+l++l ++ k ++G+il+d+ d+++ +le +r++i+++pqep +f+++ vr+n       sd+++ +als 
  KOO21596.1 1151 LRHVSFTIADSEKVGVVGRTGSGKTTMLMALFRMFKLAKGRILVDSVDISTLPLELVRSSIAIIPQEPVMFKGT-VRSNldpfgeLSDADLWEALSL 1246
                  679***********************************************************************.*********9899999999999 PP

                  STTGG.......TTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTTT CS
                  xxxxx.......xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran   92 lglke.......lkdtvvksspssLSgGqkqrvalarallkkpkllllDEpta 137 
                  ++l +         d +v +++ ++S Gqkq  ++ar++lkk ++l+lDE+ta
  KOO21596.1 1247 VSLRKsisempgGLDAHVADGGCNFSLGQKQLFCMARCVLKKTRVLVLDEATA 1299
                  9999999999996677777999*****************************96 PP

>> ABC_membrane  ABC transporter transmembrane region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.0   0.2   9.4e-15   5.3e-12      64     274 .]     195     400 ..     169     400 .. 0.90
   2 !   71.2  15.4   1.9e-22   1.1e-19       5     268 ..     770    1036 ..     762    1042 .. 0.86

  Alignments for each domain:
  == domain 1  score: 46.0 bits;  conditional E-value: 9.4e-15
                   HHHHHHHHHHHHHHHHHHHHHHCSTHHHHHHSCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHH CS
  ABC_membrane  64 llnvtgerlskrlrrklfkkilrqpmsffdtnsvGellsrltndvsklrdglgeklglffqslltfvgglivmfylgwkltlvllailpliilvsav 160
                   +   +g++++++l +++++k +r+  +   +++  +++s++++d++kl +g+  ++ +++ +l +  ++ +++ + g +  l  la+l+ +++++++
    KOO21596.1 195 CSVRLGIKIRSALMTEVYRKTFRL--REQHSQDGANVVSLVATDCAKLYEGVLHFHNVWTAPLESATIIGLLLGLAGIY-GLPALAVLFFVLPLQYY 288
                   446789999999999999999999..33344788899**************************9999888888889987.8999************* PP

                   HHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSTH CS
  ABC_membrane 161 iakilkklkkkeqkavakassvaeEslsgirtVkafgreeyflekfekaleeakkagikkaianglligitqllgllsyalalwfGttlvisgelsv 257
                   ++ ++   k    +  + +   + E+l +i+ Vk + +e+ f ++    +ee+ + + k+ ++  l+    +  + ++ +++  fG++ ++ + l +
    KOO21596.1 289 FGYRIAVHKSAAAEVSDARVLRMHEILLAIKLVKFYVWERPFAKQVAAVREEEVRLMHKAGFVKTLNLCLVFWTPPVIALVI--FGAYVSSVDRLRP 383
                   ****************************************************************999999999999999888..9***9999***** PP

                   HHHHHHHHHHHHHHHHH CS
  ABC_membrane 258 gdlvvflslfailfgal 274
                   + ++v+lslf++l ++l
    KOO21596.1 384 EFAFVVLSLFNTLRFPL 400
                   ************99886 PP

  == domain 2  score: 71.2 bits;  conditional E-value: 1.9e-22
                    HHHHHHHHHHHHHHHHHHHHHHHHHHSSTCCHH..........HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSTH CS
  ABC_membrane    5 illailagvlsplfplvlgrildtlldkgdpet..........ealnvysllllllglaqfilallqsyllnvtgerlskrlrrklfkkilrqpm 89  
                    ++l + ++ l ++  l++  +  +        t          e  n+y+  +l+++la f+l l +  ++ +   ++ ++l++++f+++lr+p 
    KOO21596.1  770 MFLFAGTQTLRIISDLWIRFWAAD--------TyllipklgkdEGNNQYLFGYLGFVLAFFVLLLSRDLVFEHFKNKAATKLHNDMFDRVLRAPY 856 
                    555555555555555555555433........222222222234579************************************************ PP

                    HHHHHSCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
  ABC_membrane   90 sffdtnsvGellsrltndvsklrdglgeklglffqslltfvgglivmfylgwkltlvllailpliilvsaviakilkklkkkeqkavakassvae 184 
                      f +++vGe+l+ +++d + +++ l++++ + + +l++++++l+++  +    +++ +++++ + +   ++ +  + lk+   ++   ++ ++ 
    KOO21596.1  857 LLFLRTPVGEILNSFAKDQYIIDEELPDTVHMATIYLMILITSLAIITASIYFYAIMSFVLFFAFWIALRIYLPAATVLKRWSGETATSVFVHVD 951 
                    *****************************************999999999888899999999999999999************************ PP

                    HHHHTHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT.TSSTHHHHHHHHHHHH CS
  ABC_membrane  185 EslsgirtVkafgreeyflekfekaleeakkagikkaianglligitqllgllsyalalwfGttlvis.gelsvgdlvvflslfa 268 
                    E+lsgi +++af +  yf ++  + ++ ++ a++    +  +l  + +llg ++++++++++++l  + g+  vg ++  +    
    KOO21596.1  952 ETLSGIDVIRAFDAVGYFMQENVQRINLHHLAMFNTEMTHLFLAFWCDLLGAILVVVTCLLSVALREElGAAAVGLAISNSIQVL 1036
                    ******************************************************************9999999999443333333 PP

>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.1   0.1    0.0028       1.6      23      45 ..     479     501 ..     472     513 .. 0.83
   2 ?    4.1   0.0     0.048        27     136     208 ..     576     645 ..     531     652 .. 0.83
   3 ?    5.2   0.0     0.023        13      27      47 ..    1164    1183 ..    1151    1202 .. 0.82
   4 !   10.1   0.0   0.00068      0.38     136     211 ..    1270    1341 ..    1204    1346 .. 0.85

  Alignments for each domain:
  == domain 1  score: 8.1 bits;  conditional E-value: 0.0028
                 TSSEEEEEESTTSSHHHHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N  23 sksftaivGpNGSGKsnlldAil 45 
                 ++++ a+vG+ G GKs++l Ail
  KOO21596.1 479 TSQVVAVVGRVGVGKSSVLHAIL 501
                 56789*****************5 PP

  == domain 2  score: 4.1 bits;  conditional E-value: 0.048
                 CS-HHHHHHHHHHHHHHHHCCS--SEEEECTTTTTS-HHHHH.HHHHHHHHHCTTSEEEEE-SSHHHCCC-SCE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N 136 lLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvk.kvaellkeksknaQfivislreemlekadkl 208
                 +LSgG+++ v l    A   ++   ++llD+  +a D++  + ++ + +k   k+  +i i+++ e+l ++d++
  KOO21596.1 576 NLSGGQRQRVCL----ARAVYHDCDIVLLDNPLSAVDQHTSThIFNKCIKGVLKEKAVILIAHQLELLPQCDRV 645
                 7999*9996655....566788899************98765156789******************99999987 PP

  == domain 3  score: 5.2 bits;  conditional E-value: 0.023
                  EEEEESTTSSHHHHHHHHHHH CS
                  xxxxxxxxxxxxxxxxxxxxx RF
       SMC_N   27 taivGpNGSGKsnlldAilFv 47  
                    +vG+ GSGK+ +l A+ F 
  KOO21596.1 1164 VGVVGRTGSGKTTMLMAL-FR 1183
                  579**************9.54 PP

  == domain 4  score: 10.1 bits;  conditional E-value: 0.00068
                  CS-HHHHHHHHHHHHHHHHCCS--SEEEECTTTTTS-HHHHHHHHHHHHHHCTTSEEEEE-SSHHHCCC-SCEEEE CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N  136 lLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvkkvaellkeksknaQfivislreemlekadklvgv 211 
                  ++S G+k+L  +a        k++ + +lDe  aa+D +  + + + +++   +   i i++r +++  +dk++ +
  KOO21596.1 1270 NFSLGQKQLFCMARC----VLKKTRVLVLDEATAAMDLHTDALIQKTIRRVFRERTTITIAHRLDTIIFSDKILTM 1341
                  678899998776644....67888899************************************9999998888765 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.0   0.1   1.8e-06     0.001      76     130 ..     457     511 ..     415     514 .. 0.82
   2 ?    4.0   0.0     0.073        41      93     126 ..    1154    1188 ..    1146    1196 .. 0.75

  Alignments for each domain:
  == domain 1  score: 19.0 bits;  conditional E-value: 1.8e-06
                  TSEEEE--TTTHTTHHHHHHHCTTSEEEEECSTTSSHHHHHHHHCTT-----S-- CS
  RsgA_GTPase  76 gyevllvsaktkegleelkellkdktsvlvGqSGvGKStLinallpelelktgev 130
                   ++v   s++ ++ + + ++l +++++++vG  GvGKS+++ a+l++++l+tg++
   KOO21596.1 457 TLNVPEFSVEPGQCVVDSTALSTSQVVAVVGRVGVGKSSVLHAILSNMKLQTGSL 511
                  556666677777777777777888****************************975 PP

  == domain 2  score: 4.0 bits;  conditional E-value: 0.073
                   HHHHCTT.SEEEEECSTTSSHHHHHHHHCTT---- CS
  RsgA_GTPase   93 lkellkd.ktsvlvGqSGvGKStLinallpelelk 126 
                   ++  ++d + + +vG +G GK+t++ al    +l+
   KOO21596.1 1154 VSFTIADsEKVGVVGRTGSGKTTMLMALFRMFKLA 1188
                   55666665667799***********9997766655 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.1   0.0    0.0007      0.39      20      58 ..     476     514 ..     469     564 .. 0.75
   2 !    9.7   0.0    0.0019       1.1      27     148 ..    1164    1301 ..    1151    1323 .. 0.57

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.0007
      AAA_16  20 rsgrpelvllsGesGvGKsslvrellralekdggiflrg 58 
                 + +++++v ++G  GvGKss++ ++l  ++ + g ++ g
  KOO21596.1 476 ALSTSQVVAVVGRVGVGKSSVLHAILSNMKLQTGSLTVG 514
                 4455689******************99888774444333 PP

  == domain 2  score: 9.7 bits;  conditional E-value: 0.0019
      AAA_16   27 vllsGesGvGKsslvrellralekdggiflrgkcdqlesaipysalaqalareellrqllde...............aesaeleawrekleeala.a 107 
                  v ++G  G+GK++++ +l+r ++ ++g  l    d +   +p+    ++  r + ++ + +e                e ++++ w +  + +l+ +
  KOO21596.1 1164 VGVVGRTGSGKTTMLMALFRMFKLAKGRILVDSVDIS--TLPL----ELV-R-SSIAIIPQEpvmfkgtvrsnldpfGELSDADLWEALSLVSLRkS 1252
                  6699***************977766555555555555..2332....222.2.44444444444455544445555545555555555555555576 PP

      AAA_16  108 vpelagaea.......srllellkrll..allsrderplvlvlDdlqwad 148 
                  ++e++g +          +    k+l+  a++   +++ vlvlD++  a 
  KOO21596.1 1253 ISEMPGGLDahvadggCNFSLGQKQLFcmARCVL-KKTRVLVLDEATAAM 1301
                  6666666666666666444444444442344444.445788888776444 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.8   0.6   0.00034      0.19       2      23 ..     483     505 ..     482     515 .. 0.84
   2 !   10.2   0.1    0.0011       0.6       1      22 [.    1163    1184 ..    1163    1212 .. 0.80

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 0.00034
                 EEEEESTTSSHHHHHHHHHTS.T CS
    MMR_HSR1   2 vaivGrpNvGKStLinaltge.k 23 
                 va+vGr  vGKS+++ a++ + k
  KOO21596.1 483 VAVVGRVGVGKSSVLHAILSNmK 505
                 89***************998644 PP

  == domain 2  score: 10.2 bits;  conditional E-value: 0.0011
                  EEEEEESTTSSHHHHHHHHHTS CS
    MMR_HSR1    1 evaivGrpNvGKStLinaltge 22  
                  +v++vGr+ +GK+t++ al++ 
  KOO21596.1 1163 KVGVVGRTGSGKTTMLMALFRM 1184
                  69*****************973 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.1   0.1     0.004       2.2      20      43 ..     478     501 ..     472     508 .. 0.83
   2 !    9.6   0.0    0.0013      0.75      18      42 ..    1157    1181 ..    1150    1189 .. 0.77

  Alignments for each domain:
  == domain 1  score: 8.1 bits;  conditional E-value: 0.004
      AAA_29  20 dlkgatlltGpsGsGKSTllDAiq 43 
                 ++++++ ++G+ G+GKS++l Ai 
  KOO21596.1 478 STSQVVAVVGRVGVGKSSVLHAIL 501
                 5566899*************9986 PP

  == domain 2  score: 9.6 bits;  conditional E-value: 0.0013
      AAA_29   18 eidlkgatlltGpsGsGKSTllDAi 42  
                  +i  ++ + ++G++GsGK+T+l A+
  KOO21596.1 1157 TIADSEKVGVVGRTGSGKTTMLMAL 1181
                  5555557789***********9776 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.6   0.1    0.0078       4.4       4      28 ..     479     503 ..     475     521 .. 0.88
   2 !    7.6   0.0    0.0078       4.4      10      30 ..    1166    1186 ..    1163    1252 .. 0.89
   3 ?   -0.6   0.0       2.7   1.5e+03      90     104 ..    1288    1302 ..    1262    1325 .. 0.73

  Alignments for each domain:
  == domain 1  score: 7.6 bits;  conditional E-value: 0.0078
      AAA_22   4 tagilvvtGesGtGKTtllrrlleq 28 
                 t ++++v+G +G+GK+ +l  +l++
  KOO21596.1 479 TSQVVAVVGRVGVGKSSVLHAILSN 503
                 66889*************9988765 PP

  == domain 2  score: 7.6 bits;  conditional E-value: 0.0078
      AAA_22   10 vtGesGtGKTtllrrlleqld 30  
                  v+G +G+GKTt l  l++ ++
  KOO21596.1 1166 VVGRTGSGKTTMLMALFRMFK 1186
                  89***********99999874 PP

  == domain 3  score: -0.6 bits;  conditional E-value: 2.7
      AAA_22   90 avielliiDEaqh.lr 104 
                  + +++l++DEa   ++
  KOO21596.1 1288 K-TRVLVLDEATAaMD 1302
                  2.589*****987454 PP

>> FtsK_SpoIIIE  FtsK/SpoIIIE family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.4   0.0     0.036        20      41      63 ..     482     504 ..     453     509 .. 0.83
   2 !   11.1   0.0   0.00033      0.19      41      59 ..    1163    1181 ..    1148    1184 .. 0.82

  Alignments for each domain:
  == domain 1  score: 4.4 bits;  conditional E-value: 0.036
                   SEEEE--TTSSHHHHHHHHHHHH CS
  FtsK_SpoIIIE  41 hllvaGatgsGKStalntLilSl 63 
                    + v+G+ g GKS +l++++ ++
    KOO21596.1 482 VVAVVGRVGVGKSSVLHAILSNM 504
                   478***************99776 PP

  == domain 2  score: 11.1 bits;  conditional E-value: 0.00033
                    SEEEE--TTSSHHHHHHHH CS
  FtsK_SpoIIIE   41 hllvaGatgsGKStalntL 59  
                     + v+G+tgsGK+t+l++L
    KOO21596.1 1163 KVGVVGRTGSGKTTMLMAL 1181
                    5669*************99 PP

>> AAA_7  P-loop containing dynein motor region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.8   0.1    0.0019         1      28      58 ..     475     505 ..     456     517 .. 0.85
   2 !    7.2   0.1     0.006       3.4      30      58 ..    1158    1186 ..    1152    1201 .. 0.80

  Alignments for each domain:
  == domain 1  score: 8.8 bits;  conditional E-value: 0.0019
       AAA_7  28 lllknkkpvllvGptGtGKtviikdllkkld 58 
                 + l+ ++ v +vG +G+GK+++++ +l++++
  KOO21596.1 475 TALSTSQVVAVVGRVGVGKSSVLHAILSNMK 505
                 4677788899*****************9998 PP

  == domain 2  score: 7.2 bits;  conditional E-value: 0.006
       AAA_7   30 lknkkpvllvGptGtGKtviikdllkkld 58  
                  ++ + +v +vG tG+GKt++++ l++ ++
  KOO21596.1 1158 IADSEKVGVVGRTGSGKTTMLMALFRMFK 1186
                  66778899************999877665 PP

>> Dynamin_N  Dynamin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.4   0.1   0.00022      0.12       1      31 [.     483     513 ..     483     534 .. 0.88
   2 ?    4.1   0.1      0.08        45       1      19 [.    1164    1182 ..    1164    1194 .. 0.88

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 0.00022
                 EEEEEBTTTTHHHHHHHHHTS--S---SSS- CS
   Dynamin_N   1 iavvGsqSsGKSSvlnaLlgedilprgpnpt 31 
                 +avvG +  GKSSvl a+l    l +g+  +
  KOO21596.1 483 VAVVGRVGVGKSSVLHAILSNMKLQTGSLTV 513
                 89*****************998888887766 PP

  == domain 2  score: 4.1 bits;  conditional E-value: 0.08
                  EEEEEBTTTTHHHHHHHHH CS
   Dynamin_N    1 iavvGsqSsGKSSvlnaLl 19  
                  + vvG + sGK+++l aL 
  KOO21596.1 1164 VGVVGRTGSGKTTMLMALF 1182
                  78*************9986 PP

>> T2SSE  Type II/IV secretion system protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.5   0.0      0.45   2.5e+02     123     155 ..     474     506 ..     391     513 .. 0.69
   2 !   12.5   0.0   9.8e-05     0.055     126     162 ..    1158    1194 ..    1049    1229 .. 0.77
   3 ?   -1.2   0.0       1.5   8.2e+02      56     134 ..    1247    1325 ..    1208    1326 .. 0.78

  Alignments for each domain:
  == domain 1  score: 0.5 bits;  conditional E-value: 0.45
       T2SSE 123 rkavrerglilvsGgTgsGKttllyallkeink 155
                 ++a+++ +++ v G  g GK+ +l a+l+ ++ 
  KOO21596.1 474 STALSTSQVVAVVGRVGVGKSSVLHAILSNMKL 506
                 4566677889999*************9998765 PP

  == domain 2  score: 12.5 bits;  conditional E-value: 9.8e-05
       T2SSE  126 vrerglilvsGgTgsGKttllyallkeinksderivt 162 
                  ++    + v G TgsGKtt+l al  +++  + ri++
  KOO21596.1 1158 IADSEKVGVVGRTGSGKTTMLMALFRMFKLAKGRILV 1194
                  5555667789******************999999875 PP

  == domain 3  score: -1.2 bits;  conditional E-value: 1.5
       T2SSE   56 alakldiseerplqdarlpekgvrlrvvllPvvagealviRkksakeltlddlgaeealkekiaevlrkavrerglilv 134 
                  ++ +++ise    +da++ ++g ++ +    ++   ++v+ k ++  l+ ++ +++ ++++ i++++r+  rer +i +
  KOO21596.1 1247 VSLRKSISEMPGGLDAHVADGGCNFSLGQKQLFCMARCVLKKTRVLVLDEATAAMDLHTDALIQKTIRRVFRERTTITI 1325
                  4567889999999999999999999999999999999999999999999999999**************9999999866 PP

>> NB-ARC  NB-ARC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.9   0.2    0.0027       1.5      20      46 ..     480     506 ..     474     513 .. 0.85
   2 !    8.6   0.2    0.0017      0.96      22      48 ..    1163    1189 ..    1156    1194 .. 0.83

  Alignments for each domain:
  == domain 1  score: 7.9 bits;  conditional E-value: 0.0027
                 SEEEEEEESTTSSHHHHHHHHCCSHCC CS
      NB-ARC  20 slvvalvGmgGvGKttlakqilnksde 46 
                 s vva+vG+ GvGK+ +++ il++++ 
  KOO21596.1 480 SQVVAVVGRVGVGKSSVLHAILSNMKL 506
                 459******************998654 PP

  == domain 2  score: 8.6 bits;  conditional E-value: 0.0017
                  EEEEEESTTSSHHHHHHHHCCSHCCCC CS
      NB-ARC   22 vvalvGmgGvGKttlakqilnksdeve 48  
                   v++vG+ G+GKtt++   ++ ++  +
  KOO21596.1 1163 KVGVVGRTGSGKTTMLMALFRMFKLAK 1189
                  699*************99999877655 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.1   0.0      0.03        17       2      20 ..     483     501 ..     482     543 .. 0.81
   2 !    8.9   0.0    0.0021       1.2       3      34 ..    1165    1203 ..    1164    1235 .. 0.71

  Alignments for each domain:
  == domain 1  score: 5.1 bits;  conditional E-value: 0.03
      AAA_21   2 nvliGpNgsGKSnLLdald 20 
                  +++G+ g+GKS++L a+ 
  KOO21596.1 483 VAVVGRVGVGKSSVLHAIL 501
                 689**************93 PP

  == domain 2  score: 8.9 bits;  conditional E-value: 0.0021
      AAA_21    3 vliGpNgsGKSnLLdaldllarl.......drdvegltd 34  
                  +++G+ gsGK++ L al  ++ l       d+  +++ +
  KOO21596.1 1165 GVVGRTGSGKTTMLMALFRMFKLakgrilvDSVDISTLP 1203
                  68***************9999875544444444333333 PP

>> AAA_15  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.1   0.0     0.027        15      23      43 ..     481     500 ..     472     540 .. 0.87
   2 !    9.1   0.0    0.0017      0.96      25      74 ..    1163    1208 ..    1151    1277 .. 0.82

  Alignments for each domain:
  == domain 1  score: 5.1 bits;  conditional E-value: 0.027
      AAA_15  23 eeltvliGkNnsGKSsileal 43 
                   +  ++G+ ++GKSs+l+a+
  KOO21596.1 481 Q-VVAVVGRVGVGKSSVLHAI 500
                 3.8899**************9 PP

  == domain 2  score: 9.1 bits;  conditional E-value: 0.0017
      AAA_15   25 ltvliGkNnsGKSsilealdlFlnnkekknkkvikiekedleifenises 74  
                     ++G+ +sGK++ l+al  +++      k  i +++ d+++   +   
  KOO21596.1 1163 KVGVVGRTGSGKTTMLMALFRMFKLA----KGRILVDSVDISTLPLELVR 1208
                  6668*******************988....67777777777766555555 PP

>> DEAD  DEAD/DEAH box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.0       5.9   3.3e+03      14      33 ..     480     499 ..     473     536 .. 0.79
   2 !   13.1   0.8   0.00011     0.061      11     152 ..    1158    1319 ..    1151    1335 .. 0.64

  Alignments for each domain:
  == domain 1  score: -2.3 bits;  conditional E-value: 5.9
                 TCEEEEEESTTSSHHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxx RF
        DEAD  14 ggdvlvaaeTGsGKTlafli 33 
                  + v v +++G GK+ +   
  KOO21596.1 480 SQVVAVVGRVGVGKSSVLHA 499
                 456789999*****988543 PP

  == domain 2  score: 13.1 bits;  conditional E-value: 0.00011
                  HHTTCEEEEEESTTSSHHHHHHHHHHHHHHHS...............TTSTS...-EEEEEESSHHHHHH..HHHHHHHHTTTSTSEEEEEETTSSH CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...............xxxxx...xxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD   11 ilgggdvlvaaeTGsGKTlaflipvlqivyet...............kgktg...pkalivePtreLaeq..tlnnlkkfkkyidlrvlliiggvaa 87  
                  i + ++v v ++TGsGKT++ l+++++ + +                           + + P +  + +  + +nl  f++  d  +   ++ v+ 
  KOO21596.1 1158 IADSEKVGVVGRTGSGKTTM-LMALFRMF-KLakgrilvdsvdistlP---LelvRSSIAIIPQEPVMFKgtVRSNLDPFGELSDADLWEALSLVSL 1249
                  5567889999********98.44444444.222334554444444442...0444667777777776654225567777777666555566777888 PP

                  HHHHHHHHTTCSEEEEEHHHHHHHHHCTSSH.....CTTEEEEEEETHHHHHHTTTHHHHHHHHHHSHHH CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD   88 rdqlskldngvdivvgtpgrlddllstgkln.....lsqvrflVlDEadrlldqgfsdfinrilnqlpqi 152 
                  r+ +s++  g+d  v+  g  ++l +++ +      l++ r+lVlDEa   +d      i++ ++++ + 
  KOO21596.1 1250 RKSISEMPGGLDAHVADGGCNFSLGQKQLFCmarcvLKKTRVLVLDEATAAMDLHTDALIQKTIRRVFRE 1319
                  888888877788888887777777765555455666************9999987777777777766433 PP

>> TrwB_AAD_bind  Type IV secretion-system coupling protein DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.5   0.1     0.024        14      16      42 ..     481     507 ..     475     513 .. 0.85
   2 !    8.8   0.1    0.0012      0.66      16      48 ..    1162    1194 ..    1149    1199 .. 0.87

  Alignments for each domain:
  == domain 1  score: 4.5 bits;  conditional E-value: 0.024
  TrwB_AAD_bind  16 qhilivGttGsGKtqalekllrairar 42 
                    q +++vG +G GK+ +l+++l +++ +
     KOO21596.1 481 QVVAVVGRVGVGKSSVLHAILSNMKLQ 507
                    56789****************999865 PP

  == domain 2  score: 8.8 bits;  conditional E-value: 0.0012
  TrwB_AAD_bind   16 qhilivGttGsGKtqalekllrairargdraiv 48  
                     +++ +vG tGsGKt++l +l r  +  + r++v
     KOO21596.1 1162 EKVGVVGRTGSGKTTMLMALFRMFKLAKGRILV 1194
                     57889*****************99998888876 PP

>> Roc  Ras of Complex, Roc, domain of DAPkinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.4   0.0    0.0044       2.4       2      37 ..     483     518 ..     482     535 .. 0.86
   2 ?    4.4   0.2     0.073        41       1      20 [.    1163    1182 ..    1163    1201 .. 0.88

  Alignments for each domain:
  == domain 1  score: 8.4 bits;  conditional E-value: 0.0044
                 EEEESSTTSSHHHHHHCHCT-CCC-EEETTTTEEEE CS
         Roc   2 vvlvGdsgvGKtsllkrfvedkfsekekstigvdfl 37 
                 v +vG  gvGK+s l+ ++++   ++ + t+g +++
  KOO21596.1 483 VAVVGRVGVGKSSVLHAILSNMKLQTGSLTVGGNIA 518
                 679*****************9999999999998775 PP

  == domain 2  score: 4.4 bits;  conditional E-value: 0.073
                  EEEEESSTTSSHHHHHHCHC CS
         Roc    1 KvvlvGdsgvGKtsllkrfv 20  
                  Kv +vG +g+GKt++l  + 
  KOO21596.1 1163 KVGVVGRTGSGKTTMLMALF 1182
                  8999***********98775 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.3   0.2    0.0031       1.7      10      41 ..     472     503 ..     465     518 .. 0.76
   2 ?    9.5   0.0    0.0013      0.73      21      50 ..    1164    1193 ..    1153    1198 .. 0.80
   3 ?   -1.4   0.0         3   1.7e+03      86     111 ..    1286    1311 ..    1266    1316 .. 0.79

  Alignments for each domain:
  == domain 1  score: 8.3 bits;  conditional E-value: 0.0031
      AAA_30  10 vealltsgdrvavltGpAGtGKttalkalrea 41 
                 v++++ s+ +v++++G+ G GK+ +l a+   
  KOO21596.1 472 VDSTALSTSQVVAVVGRVGVGKSSVLHAILSN 503
                 4555566667*****************99544 PP

  == domain 2  score: 9.5 bits;  conditional E-value: 0.0013
      AAA_30   21 avltGpAGtGKttalkalreaweaaggrvi 50  
                  + ++G+ G+GKtt+l al ++++ a+gr++
  KOO21596.1 1164 VGVVGRTGSGKTTMLMALFRMFKLAKGRIL 1193
                  6799**************998887766665 PP

  == domain 3  score: -1.4 bits;  conditional E-value: 3
      AAA_30   86 lepgtllivDEagmvdtkqlaallka 111 
                  l++ ++l+ DEa  +   +++al+++
  KOO21596.1 1286 LKKTRVLVLDEATAAMDLHTDALIQK 1311
                  66779*******99988888888765 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.5   0.1     0.027        15       2      25 ..     482     505 ..     481     513 .. 0.87
   2 ?    6.9   0.1    0.0096       5.4       4      22 ..    1165    1183 ..    1162    1198 .. 0.79

  Alignments for each domain:
  == domain 1  score: 5.5 bits;  conditional E-value: 0.027
                 CEEEEC-TTTCHHHHHHHHHHHHC CS
       NACHT   2 lvilqGeaGsGKTtLlqklalawa 25 
                 +v++ G+ G+GK+  l+ + + ++
  KOO21596.1 482 VVAVVGRVGVGKSSVLHAILSNMK 505
                 799****************98876 PP

  == domain 2  score: 6.9 bits;  conditional E-value: 0.0096
                  EEEC-TTTCHHHHHHHHHH CS
       NACHT    4 ilqGeaGsGKTtLlqklal 22  
                   + G+ GsGKTt+l  l +
  KOO21596.1 1165 GVVGRTGSGKTTMLMALFR 1183
                  589***********99954 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.1   0.0      0.43   2.4e+02      20      39 ..     481     500 ..     463     504 .. 0.90
   2 ?    9.6   0.0    0.0021       1.2      23      39 ..    1165    1181 ..    1151    1185 .. 0.83

  Alignments for each domain:
  == domain 1  score: 2.1 bits;  conditional E-value: 0.43
      AAA_23  20 gltlItGpNGaGKTTildAi 39 
                  +++++G  G GK+++l Ai
  KOO21596.1 481 QVVAVVGRVGVGKSSVLHAI 500
                 678999*************9 PP

  == domain 2  score: 9.6 bits;  conditional E-value: 0.0021
      AAA_23   23 lItGpNGaGKTTildAi 39  
                   ++G +G+GKTT l A+
  KOO21596.1 1165 GVVGRTGSGKTTMLMAL 1181
                  579***********998 PP

>> DUF87  Helicase HerA, central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.2   0.7      0.14        80      26      48 ..     483     505 ..     477     513 .. 0.85
   2 ?   11.1   0.1   0.00054       0.3      24      57 ..    1162    1194 ..    1156    1195 .. 0.86

  Alignments for each domain:
  == domain 1  score: 3.2 bits;  conditional E-value: 0.14
       DUF87  26 lAilgsTGsGKSntvavLleell 48 
                 +A++g+ G+GKS     +l+++ 
  KOO21596.1 483 VAVVGRVGVGKSSVLHAILSNMK 505
                 8**************99999876 PP

  == domain 2  score: 11.1 bits;  conditional E-value: 0.00054
       DUF87   24 rHlAilgsTGsGKSntvavLleellekkgatili 57  
                  + ++++g+TGsGK++    L++      +++il+
  KOO21596.1 1162 EKVGVVGRTGSGKTTMLMALFRMFK-LAKGRILV 1194
                  679*************999998877.77777776 PP

>> cobW  CobW/HypB/UreG, nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.3   0.2     0.049        27       2      24 ..     482     504 ..     481     513 .. 0.85
   2 ?    7.4   0.1    0.0052       2.9       3      23 ..    1164    1184 ..    1162    1203 .. 0.80

  Alignments for each domain:
  == domain 1  score: 4.3 bits;  conditional E-value: 0.049
                 EEEEEESTTCCHHHHHHHHHCT- CS
        cobW   2 vtvltGflGsGKTtLlnhllenr 24 
                 v+ ++G +G GK+++l ++l+n 
  KOO21596.1 482 VVAVVGRVGVGKSSVLHAILSNM 504
                 7889***************9764 PP

  == domain 2  score: 7.4 bits;  conditional E-value: 0.0052
                  EEEEESTTCCHHHHHHHHHCT CS
        cobW    3 tvltGflGsGKTtLlnhllen 23  
                  ++++G  GsGKTt+l +l + 
  KOO21596.1 1164 VGVVGRTGSGKTTMLMALFRM 1184
                  5799***********999854 PP

>> KAP_NTPase  KAP family P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.1   0.0    0.0025       1.4      12      48 ..     472     508 ..     469     764 .. 0.82
   2 ?    1.4   0.0      0.26   1.5e+02      23      47 ..    1164    1188 ..    1154    1342 .. 0.83

  Alignments for each domain:
  == domain 1  score: 8.1 bits;  conditional E-value: 0.0025
  KAP_NTPase  12 lseptlatpivvgLygkWGsGKssllnkledelkefa 48 
                 + +++l+t+ vv++ g  G+GKss+l  + +++k + 
  KOO21596.1 472 VDSTALSTSQVVAVVGRVGVGKSSVLHAILSNMKLQT 508
                 5667889***************************885 PP

  == domain 2  score: 1.4 bits;  conditional E-value: 0.26
  KAP_NTPase   23 vgLygkWGsGKssllnkledelkef 47  
                  vg+ g  GsGK+++l  l +  k  
  KOO21596.1 1164 VGVVGRTGSGKTTMLMALFRMFKLA 1188
                  7888888********9998877766 PP

>> AAA_24  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.2   0.0      0.94   5.3e+02       2      20 ..     480     498 ..     479     507 .. 0.85
   2 ?    8.7   0.0    0.0023       1.3       4      89 ..    1163    1312 ..    1160    1317 .. 0.72

  Alignments for each domain:
  == domain 1  score: 0.2 bits;  conditional E-value: 0.94
      AAA_24   2 klkiliyGpsgiGKTtlak 20 
                 ++ ++++G  g+GK++++ 
  KOO21596.1 480 SQVVAVVGRVGVGKSSVLH 498
                 57899**********9876 PP

  == domain 2  score: 8.7 bits;  conditional E-value: 0.0023
      AAA_24    4 kiliyGpsgiGKTtlakel.......gpkplfidtekGlksldadkfpdie..............swedfldevvel.................... 59  
                  k+ ++G  g+GKTt++  l       + ++l+  ++ ++  l+  +   i               s          +                    
  KOO21596.1 1163 KVGVVGRTGSGKTTMLMALfrmfklaKGRILVDSVDISTLPLELVRSS-IAiipqepvmfkgtvrS----------Nldpfgelsdadlwealslvs 1248
                  899************999966666666666666666666555555532.33566755555554440..........233333335555555555556 PP

      AAA_24   60 ..................................aaeladyktlviDtideleelclaevirqn 89  
                                                    ++ l++ ++lv+D ++ +++l ++ +i+++
  KOO21596.1 1249 lrksisempggldahvadggcnfslgqkqlfcmaRCVLKKTRVLVLDEATAAMDLHTDALIQKT 1312
                  666666669999999999***************999******************9999999875 PP

>> MeaB  Methylmalonyl Co-A mutase-associated GTPase MeaB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.2   0.3      0.13        71      28      54 ..     479     505 ..     472     514 .. 0.84
   2 ?    7.6   0.1     0.003       1.7      19      67 ..    1151    1199 ..    1144    1202 .. 0.83

  Alignments for each domain:
  == domain 1  score: 2.2 bits;  conditional E-value: 0.13
                 -SEEEEEEE-TTSSHHHHHHHHHHHHH CS
        MeaB  28 raqvvGltGvPGaGkstlvealglelr 54 
                  +qvv + G  G+Gks +++a+  +++
  KOO21596.1 479 TSQVVAVVGRVGVGKSSVLHAILSNMK 505
                 5799***************99987764 PP

  == domain 2  score: 7.6 bits;  conditional E-value: 0.003
                  HHHHGGG-S-SEEEEEEE-TTSSHHHHHHHHHHHHHCTT--EEEEEE-- CS
        MeaB   19 lerllakaGraqvvGltGvPGaGkstlvealglelrrrGkrvavlavDP 67  
                  l++++ +   +++vG+ G  G+Gk t++ al   ++ +  r+ v +vD 
  KOO21596.1 1151 LRHVSFTIADSEKVGVVGRTGSGKTTMLMALFRMFKLAKGRILVDSVDI 1199
                  566666777899*******************999988888888877775 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.3   0.0       0.2   1.1e+02       1      22 [.     483     504 ..     483     534 .. 0.73
   2 ?    6.1   0.0     0.027        15       1      29 [.    1164    1194 ..    1164    1230 .. 0.80

  Alignments for each domain:
  == domain 1  score: 3.3 bits;  conditional E-value: 0.2
      AAA_18   1 IlltGtpGvGKttlakeLskrl 22 
                 +++ G  GvGK+++ +++ + +
  KOO21596.1 483 VAVVGRVGVGKSSVLHAILSNM 504
                 679999********99984443 PP

  == domain 2  score: 6.1 bits;  conditional E-value: 0.027
      AAA_18    1 IlltGtpGvGKttlakeLskrlgf..gvnlr 29  
                  +++ G  G+GKtt+  +L ++ ++  g++l 
  KOO21596.1 1164 VGVVGRTGSGKTTMLMALFRMFKLakGRILV 1194
                  6899**************8885444433333 PP

>> ATP_bind_1  Conserved hypothetical ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.2   0.3      0.24   1.3e+02       1      23 [.     485     507 ..     485     514 .. 0.85
   2 ?    8.1   0.0    0.0036         2       1      24 [.    1166    1189 ..    1166    1198 .. 0.87

  Alignments for each domain:
  == domain 1  score: 2.2 bits;  conditional E-value: 0.24
  ATP_bind_1   1 vvGpaGsGKttfvgalseilelr 23 
                 vvG +G+GK++  +a+ + ++l+
  KOO21596.1 485 VVGRVGVGKSSVLHAILSNMKLQ 507
                 89************999888766 PP

  == domain 2  score: 8.1 bits;  conditional E-value: 0.0036
  ATP_bind_1    1 vvGpaGsGKttfvgalseilelrg 24  
                  vvG  GsGKtt+  al  +++l +
  KOO21596.1 1166 VVGRTGSGKTTMLMALFRMFKLAK 1189
                  89**************99998876 PP

>> AAA_19  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.9   0.2      0.11        60       8      36 ..     478     506 ..     473     514 .. 0.85
   2 ?    5.9   0.0     0.028        16       9      38 ..    1160    1189 ..    1153    1201 .. 0.83

  Alignments for each domain:
  == domain 1  score: 3.9 bits;  conditional E-value: 0.11
      AAA_19   8 lkekvllvtaGpGtGKTrvlkhivallve 36 
                 ++++v++v++  G GK+ vl++i++ ++ 
  KOO21596.1 478 STSQVVAVVGRVGVGKSSVLHAILSNMKL 506
                 6789******************9998865 PP

  == domain 2  score: 5.9 bits;  conditional E-value: 0.028
      AAA_19    9 kekvllvtaGpGtGKTrvlkhivallvelg 38  
                   ++ + v++  G+GKT++l++  ++++ ++
  KOO21596.1 1160 DSEKVGVVGRTGSGKTTMLMALFRMFKLAK 1189
                  56678899************9999887666 PP

>> Pox_A32  Poxvirus A32 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.1         5   2.8e+03      16      37 ..     483     504 ..     477     506 .. 0.87
   2 ?   10.7   0.2   0.00047      0.26      15      37 ..    1163    1185 ..    1155    1193 .. 0.87

  Alignments for each domain:
  == domain 1  score: -2.5 bits;  conditional E-value: 5
     Pox_A32  16 lalvGgsGsGktvyLlsLlrtl 37 
                 +a+vG  G Gk   L ++l+++
  KOO21596.1 483 VAVVGRVGVGKSSVLHAILSNM 504
                 689***********99999876 PP

  == domain 2  score: 10.7 bits;  conditional E-value: 0.00047
     Pox_A32   15 rlalvGgsGsGktvyLlsLlrtl 37  
                  ++ +vG +GsGkt+ L++L+r +
  KOO21596.1 1163 KVGVVGRTGSGKTTMLMALFRMF 1185
                  6779****************976 PP

>> TsaE  Threonylcarbamoyl adenosine biosynthesis protein TsaE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.8   0.1     0.048        27      19      46 ..     480     507 ..     465     513 .. 0.80
   2 ?    4.0   0.1     0.085        47      20      45 ..    1162    1187 ..    1148    1196 .. 0.77

  Alignments for each domain:
  == domain 1  score: 4.8 bits;  conditional E-value: 0.048
                 TEEEEEEESTTSSHHHHHHHHHHHTT-- CS
        TsaE  19 gdvilLeGdLGaGKTtlvrglakalgve 46 
                 ++v++  G +G+GK+   ++++++++++
  KOO21596.1 480 SQVVAVVGRVGVGKSSVLHAILSNMKLQ 507
                 789*******************999775 PP

  == domain 2  score: 4.0 bits;  conditional E-value: 0.085
                  EEEEEEESTTSSHHHHHHHHHHHTT- CS
        TsaE   20 dvilLeGdLGaGKTtlvrglakalgv 45  
                  + +   G  G+GKTt+  +l + +++
  KOO21596.1 1162 EKVGVVGRTGSGKTTMLMALFRMFKL 1187
                  4577889**********999998876 PP

>> NTPase_1  NTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.9   0.2      0.02        11       2      32 ..     483     515 ..     482     522 .. 0.77
   2 ?    3.5   0.2       0.1        58       2      23 ..    1164    1185 ..    1163    1192 .. 0.83
   3 ?    0.6   0.1      0.81   4.5e+02      90     154 ..    1283    1348 ..    1274    1354 .. 0.75

  Alignments for each domain:
  == domain 1  score: 5.9 bits;  conditional E-value: 0.02
                 EEEE--TTSSHHHHHHHHHHHH.....GGGEEE CS
    NTPase_1   2 vfiTGppGvGKtTlvkkvlellkss..gvkvgG 32 
                 v++ G+ GvGK+ +++ +l+++k +   ++vgG
  KOO21596.1 483 VAVVGRVGVGKSSVLHAILSNMKLQtgSLTVGG 515
                 7899**************997654322566666 PP

  == domain 2  score: 3.5 bits;  conditional E-value: 0.1
                  EEEE--TTSSHHHHHHHHHHHH CS
    NTPase_1    2 vfiTGppGvGKtTlvkkvlell 23  
                  v + G+ G+GKtT++  + ++ 
  KOO21596.1 1164 VGVVGRTGSGKTTMLMALFRMF 1185
                  7799**********98877665 PP

  == domain 3  score: 0.6 bits;  conditional E-value: 0.81
                  HHHHHHH-EEEE---.STTGGG-HHHH.HHHHHHHTTTSEEEEE--SS--SHHHHHHHT-TT-EEEE CS
    NTPase_1   90 rkalseadviviDEi.GkmElkskkfk.eaveevLksekpvlavihrrkdlalveeirerkdvkvfe 154 
                  r+ l+++ v+v+DE    m l +  ++ +++++v+++ +  +++ hr ++  + ++i   +d++v+e
  KOO21596.1 1283 RCVLKKTRVLVLDEAtAAMDLHTDALIqKTIRRVFRERT-TITIAHRLDTIIFSDKILTMADGHVIE 1348
                  56678999******7258***998875157899988666.566667776888888888888887766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1449 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1030  (0.0574488); expected 358.6 (0.02)
Passed bias filter:                      602  (0.0335769); expected 358.6 (0.02)
Passed Vit filter:                        97  (0.00541023); expected 17.9 (0.001)
Passed Fwd filter:                        33  (0.00184059); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              32  [number of targets reported over threshold]
# CPU time: 1.09u 0.29s 00:00:01.38 Elapsed: 00:00:00.47
# Mc/sec: 9194.37
//
Query:       KOO21597.1  [L=379]
Description: hypothetical protein Ctob_000534 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
       0.27   11.9   1.5        2.1    9.1   0.4    2.7  3  DnaI_N      Primosomal protein DnaI N-terminus
        5.6    7.2  10.3        2.1    8.6   0.5    2.6  2  OrfB_IS605  Probable transposase
        8.6    6.5  16.3        3.5    7.7   1.0    3.4  3  IQ          IQ calmodulin-binding motif


Domain annotation for each model (and alignments):
>> DnaI_N  Primosomal protein DnaI N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.0      0.39   2.3e+03      28      45 ..      42      59 ..      35      64 .. 0.82
   2 ?    9.1   0.4   0.00035       2.1       6      67 ..     101     161 ..      97     173 .. 0.84
   3 ?   -1.0   0.0      0.49   2.9e+03       6      58 ..     201     252 ..     197     256 .. 0.77

  Alignments for each domain:
  == domain 1  score: -0.7 bits;  conditional E-value: 0.39
                HTTXHHHHHHHHHSTTTC CS
      DnaI_N 28 vlsdpeVqaFlqehqeel 45
                + ++++Vqa+l+e +e l
  KOO21597.1 42 AARHEHVQALLREYEELL 59
                568999******999855 PP

  == domain 2  score: 9.1 bits;  conditional E-value: 0.00035
                 XSXXXXSXXXHHHHHHHHHHHHHTTXHHHHHHHHHSTTTC-HHHHHHTHHHHHHHHHS-SS- CS
      DnaI_N   6 eslkkllkkrkfekryeklkeevlsdpeVqaFlqehqeelteeaierslskLyeyveekkkc 67 
                 ++l++ +k     +r+++++++v++d+   aF +e  +++++e +er l+   e  + +k+ 
  KOO21597.1 101 NELQRRTKAATTIQRVQRMRQRVVNDAA-PAFSKEDIDRVQKEIVERTLTMAKEMRKARKAR 161
                 5677777888888************986.89*****************99887777777665 PP

  == domain 3  score: -1.0 bits;  conditional E-value: 0.49
                 XSXXX.XSXXXHHHHHHHHHHHHHTTXHHHHHHHHHSTTTC-HHHHHHTHHHHH CS
      DnaI_N   6 eslkk.llkkrkfekryeklkeevlsdpeVqaFlqehqeelteeaierslskLy 58 
                 ++l +  l+  ++ ++++++++++ s p+ +  ++++   + ++ ++ +++ Ly
  KOO21597.1 201 KELREdALRGVQMANDTKEIVRQLQSWPRLRGSIHANA--VRHDIMRTQAAALY 252
                 55555466667888899999999999999998888887..88888888888888 PP

>> OrfB_IS605  Probable transposase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.6   4.3     0.052   3.1e+02      68      92 ..      72      96 ..      43     104 .. 0.79
   2 ?    8.6   0.5   0.00036       2.1      69     109 ..     105     145 ..      97     156 .. 0.85

  Alignments for each domain:
  == domain 1  score: 1.6 bits;  conditional E-value: 0.052
  OrfB_IS605 68 knykkasrklarlhrkrsrrrkhll 92
                ++ +    ++++ +r+rs rr+h++
  KOO21597.1 72 RRERTSALRVQKAWRRRSLRRRHAF 96
                233667789**************97 PP

  == domain 2  score: 8.6 bits;  conditional E-value: 0.00036
  OrfB_IS605  69 nykkasrklarlhrkrsrrrkhllhklathliktlkevgve 109
                 +++ka + ++r+ r r+r +++++ +++++ i++ +++ ve
  KOO21597.1 105 RRTKAATTIQRVQRMRQRVVNDAAPAFSKEDIDRVQKEIVE 145
                 479999************************99999999887 PP

>> IQ  IQ calmodulin-binding motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.1       1.1   6.4e+03      13      19 ..      68      74 ..      68      74 .. 0.88
   2 ?    5.6   4.6    0.0028        17       3      20 ..      77      94 ..      75      95 .. 0.90
   3 ?    7.7   1.0   0.00058       3.5       1      13 [.     107     119 ..     107     121 .. 0.89

  Alignments for each domain:
  == domain 1  score: -2.5 bits;  conditional E-value: 1.1
                HHHHHHH CS
          IQ 13 GylaRkr 19
                G+++R++
  KOO21597.1 68 GWQQRRE 74
                89***96 PP

  == domain 2  score: 5.6 bits;  conditional E-value: 0.0028
                HHHHHHHHHHHHHHHHHH CS
          IQ  3 aaikIQaawRGylaRkry 20
                +a++ Q+awR+   R+r+
  KOO21597.1 77 SALRVQKAWRRRSLRRRH 94
                899************986 PP

  == domain 3  score: 7.7 bits;  conditional E-value: 0.00058
                 HHHHHHHHHHHHH CS
          IQ   1 rkaaikIQaawRG 13 
                 +kaa++IQ++ R+
  KOO21597.1 107 TKAATTIQRVQRM 119
                 69********998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (379 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1258  (0.0701657); expected 358.6 (0.02)
Passed bias filter:                      455  (0.0253779); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.52u 0.26s 00:00:00.78 Elapsed: 00:00:00.42
# Mc/sec: 2717.90
//
Query:       KOO21598.1  [L=663]
Description: RNA-binding [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.1e-47  155.3   0.1    1.3e-05   24.6   0.0    8.3  8  PUF              Pumilio-family RNA binding repeat
     0.0088   16.3   0.1       0.55   10.5   0.0    2.7  2  Sacchrp_dh_NADP  Saccharopine dehydrogenase NADP binding doma
  ------ inclusion threshold ------
      0.081   13.0   1.3        6.1    6.9   0.1    2.4  2  MDFI             MyoD family inhibitor


Domain annotation for each model (and alignments):
>> PUF  Pumilio-family RNA binding repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.7   0.0   0.00024       1.4       4      33 ..     346     375 ..     343     377 .. 0.83
   2 !   22.9   0.0   7.5e-09   4.5e-05       4      31 ..     382     409 ..     379     413 .. 0.88
   3 !   21.8   0.0   1.7e-08    0.0001       4      34 ..     418     449 ..     416     450 .. 0.88
   4 !   18.2   0.0   2.4e-07    0.0014       8      29 ..     459     480 ..     453     483 .. 0.85
   5 !   24.6   0.0   2.2e-09   1.3e-05       3      31 ..     490     518 ..     488     522 .. 0.87
   6 !   21.4   0.0   2.3e-08   0.00014       4      25 ..     527     548 ..     525     555 .. 0.84
   7 !   10.3   0.0   7.8e-05      0.47       3      25 ..     562     584 ..     560     589 .. 0.84
   8 !   15.9   0.0   1.3e-06    0.0077       8      29 ..     605     627 ..     602     629 .. 0.85

  Alignments for each domain:
  == domain 1  score: 8.7 bits;  conditional E-value: 0.00024
                 GGHHHHHTSTTHHHHHHHHHHHSCHHHHHH CS
         PUF   4 gnlvqLstdqyGnyvvQkllehateeqkkl 33 
                 + l++L+ dq G++++Q  l+  +++ ++l
  KOO21598.1 346 NGLLELAHDQSGCRFLQDQLDLRSKTHIDL 375
                 7799*************9999877776666 PP

  == domain 2  score: 22.9 bits;  conditional E-value: 7.5e-09
                 GGHHHHHTSTTHHHHHHHHHHHSCHHHH CS
         PUF   4 gnlvqLstdqyGnyvvQkllehateeqk 31 
                 g +v Ls d++Gny+vQkll++ t+eq+
  KOO21598.1 382 GDVVALSMDPFGNYLVQKLLQYGTSEQR 409
                 6688899***************999986 PP

  == domain 3  score: 21.8 bits;  conditional E-value: 1.7e-08
                 GGHHHHHTSTTHHHHHHHHHHH.SCHHHHHHH CS
         PUF   4 gnlvqLstdqyGnyvvQklleh.ateeqkkli 34 
                 ++l+ ++ + +G++vvQk+le   teeq + +
  KOO21598.1 418 PSLIPIALNVHGTRVVQKMLEAaETEEQLDTL 449
                 678899****************9999998765 PP

  == domain 4  score: 18.2 bits;  conditional E-value: 2.4e-07
                 HHHTSTTHHHHHHHHHHHSCHH CS
         PUF   8 qLstdqyGnyvvQkllehatee 29 
                 +L+ d +Gn+vvQ++l  +++e
  KOO21598.1 459 DLILDMNGNHVVQRCLASLKPE 480
                 79**************877765 PP

  == domain 5  score: 24.6 bits;  conditional E-value: 2.2e-09
                 GGGHHHHHTSTTHHHHHHHHHHHSCHHHH CS
         PUF   3 kgnlvqLstdqyGnyvvQkllehateeqk 31 
                 k ++v  +t+++G++v+Q++l+ha+ +q+
  KOO21598.1 490 KAECVRVATHRHGCCVLQRCLDHAPDSQR 518
                 67788899***************998886 PP

  == domain 6  score: 21.4 bits;  conditional E-value: 2.3e-08
                 GGHHHHHTSTTHHHHHHHHHHH CS
         PUF   4 gnlvqLstdqyGnyvvQklleh 25 
                  n  +L+ d++GnyvvQ++le 
  KOO21598.1 527 ANARKLVLDPFGNYVVQYVLEL 548
                 67889***************95 PP

  == domain 7  score: 10.3 bits;  conditional E-value: 7.8e-05
                 GGGHHHHHTSTTHHHHHHHHHHH CS
         PUF   3 kgnlvqLstdqyGnyvvQklleh 25 
                 +g++ +L   ++ ++v++k+l+ 
  KOO21598.1 562 QGSFADLTLQKFSSNVIEKCLQS 584
                 567778999************85 PP

  == domain 8  score: 15.9 bits;  conditional E-value: 1.3e-06
                 HHHTSTTHHHHHHHHHHH.SCHH CS
         PUF   8 qLstdqyGnyvvQklleh.atee 29 
                 qL  d+++nyvvQ+ll++ ++ee
  KOO21598.1 605 QLLHDPFANYVVQTLLTVgSDEE 627
                 6788*************966554 PP

>> Sacchrp_dh_NADP  Saccharopine dehydrogenase NADP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.5   0.0   9.2e-05      0.55      10      91 ..     393     475 ..     392     477 .. 0.93
   2 ?    2.8   0.0     0.023   1.4e+02      10      92 ..     502     584 ..     500     633 .. 0.83

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 9.2e-05
                      HHHHHHHHHCTCCT-GEEEEEESSHHHHHHHHCHHTTTCEEEEE--TTTHHHHHHHHHTTS.SEEEE-SSGGGHHHHHHHHHH CS
  Sacchrp_dh_NADP  10 GqavaellarhfdvdaeitvadrskeklealaakalgvrfeaialdaenyeavLaallkeg.dlvvnlsppissldvlkaCie 91 
                      G  ++++l++ +  +++i+++     +l  +a +++g+r+ ++ l a++ e+ L+ l+      v++l+ ++ ++ v++ C++
       KOO21598.1 393 GNYLVQKLLQYGTSEQRIALVAGAAPSLIPIALNVHGTRVVQKMLEAAETEEQLDTLIGALnARVMDLILDMNGNHVVQRCLA 475
                      6778899999999988999999999999999999**************************9999*****************86 PP

  == domain 2  score: 2.8 bits;  conditional E-value: 0.023
                      HHHHHHHHHCTCCT-GEEEEEESSHHHHHHHHCHHTTTCEEEEE--TTTHHHHHHHHHTTS..SEEEE-SSGGGHHHHHHHHHHH CS
  Sacchrp_dh_NADP  10 GqavaellarhfdvdaeitvadrskeklealaakalgvrfeaialdaenyeavLaallkeg..dlvvnlsppissldvlkaCiet 92 
                      G +v++ +++h + ++++ +++   +++++l+ +  g  + ++ l   ++e  L++ + ++  + + +l+ + +s +v++ C++ 
       KOO21598.1 502 GCCVLQRCLDHAPDSQRVPIIGNVIANARKLVLDPFGNYVVQYVLELRQPE--LTRGIGQAlqGSFADLTLQKFSSNVIEKCLQS 584
                      668999999999988899999999999999998866666666666666555..78888888889999999999999999999875 PP

>> MDFI  MyoD family inhibitor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.6   0.1    0.0052        31      30      82 ..     147     202 ..     135     212 .. 0.80
   2 ?    6.9   0.1     0.001       6.1     146     168 ..     576     598 ..     572     601 .. 0.92

  Alignments for each domain:
  == domain 1  score: 4.6 bits;  conditional E-value: 0.0052
        MDFI  30 ltngsg...vvngvseasaadskklstpvekklkrklrsslsstsksskkskadat 82 
                    gsg     ++++ a+++++++ s+ v+++l++kl++  ++ ++ ++ ++ +at
  KOO21598.1 147 CCAGSGgvpSASSMTAATPDGNSAASAEVTRQLQSKLQEAQQLYEQQQRLMQLHAT 202
                 555555433456689999999*************************9999888777 PP

  == domain 2  score: 6.9 bits;  conditional E-value: 0.001
        MDFI 146 gileaCcessdCLeiclecceiC 168
                  ++e+C +s d L i++  +eiC
  KOO21598.1 576 NVIEKCLQSNDRLLIAMVTSEIC 598
                 589******************** PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (663 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       952  (0.0530983); expected 358.6 (0.02)
Passed bias filter:                      672  (0.0374812); expected 358.6 (0.02)
Passed Vit filter:                        50  (0.00278878); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.67u 0.28s 00:00:00.95 Elapsed: 00:00:00.45
# Mc/sec: 4442.29
//
Query:       KOO21599.1  [L=356]
Description: hypothetical protein Ctob_001266 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.6e-10   40.6   0.0      0.001   18.7   0.0    3.4  3  ubiquitin  Ubiquitin family


Domain annotation for each model (and alignments):
>> ubiquitin  Ubiquitin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.7   0.0   5.8e-08     0.001      41      72 .]     100     131 ..      91     131 .. 0.94
   2 !    4.9   0.0    0.0012        22      17      32 ..     166     181 ..     159     188 .. 0.84
   3 !   12.9   0.0   3.7e-06     0.067      39      70 ..     301     332 ..     280     334 .. 0.89

  Alignments for each domain:
  == domain 1  score: 18.7 bits;  conditional E-value: 5.8e-08
                 EEETTEEE-TTSBHGGHTTSTTEEEEEEESSC CS
   ubiquitin  41 LiysGkvLedertleeygiqdgstlhlvlrlr 72 
                 L y+G++L  e++l++y i++g+ l+lv+r+r
  KOO21599.1 100 LKYHGQLLAFEKPLADYAIKNGAELQLVVRPR 131
                 78***************************986 PP

  == domain 2  score: 4.9 bits;  conditional E-value: 0.0012
                 TTSBHHHHHHHHHHHH CS
   ubiquitin  17 esdtveelKekiaeke 32 
                  ++tv+elK+k++e +
  KOO21599.1 166 NQTTVLELKQKLSEYF 181
                 579*********9876 PP

  == domain 3  score: 12.9 bits;  conditional E-value: 3.7e-06
                 EEEEETTEEE-TTSBHGGHTTSTTEEEEEEES CS
   ubiquitin  39 qrLiysGkvLedertleeygiqdgstlhlvlr 70 
                 + L+y+G +L+de  l+ +gi ++  l l+++
  KOO21599.1 301 LNLFYAGLPLKDEDALGKLGIVNNESLYLNFK 332
                 689***********************999877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (356 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       346  (0.0192983); expected 358.6 (0.02)
Passed bias filter:                      316  (0.0176251); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.25s 00:00:00.67 Elapsed: 00:00:00.39
# Mc/sec: 2707.72
//
Query:       KOO21600.1  [L=238]
Description: mitochondrial protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.1e-35  121.9   3.7    1.2e-08   35.4   0.3    4.2  4  RCC1      Regulator of chromosome condensation (RCC1) repeat
    4.6e-13   48.6  18.7    2.2e-07   30.5   1.4    4.9  4  RCC1_2    Regulator of chromosome condensation (RCC1) repeat


Domain annotation for each model (and alignments):
>> RCC1  Regulator of chromosome condensation (RCC1) repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.4   0.0     5e-11   4.4e-07       8      50 .]       2      48 ..       1      48 [. 0.83
   2 !   30.2   0.0   5.9e-11   5.3e-07       1      44 [.      51     103 ..      51     106 .. 0.82
   3 !   24.3   0.0   4.1e-09   3.6e-05       3      50 .]     122     182 ..     121     182 .. 0.94
   4 !   35.4   0.3   1.3e-12   1.2e-08       1      49 [.     185     236 ..     185     237 .. 0.87

  Alignments for each domain:
  == domain 1  score: 30.4 bits;  conditional E-value: 5e-11
                E--GGGTTSSSS-....--EEEEEE-GGGTTS-EEEEEEETTEEEEE CS
        RCC1  8 GrndyGqLGlgtt....esvlvPtkveglsgnrvvkvacGddhtval 50
                G n++GqLGlg++     +++ Pt+++     +++ +acG+ h+v++
  KOO21600.1  2 GDNSHGQLGLGKEpvemPRCDEPTLIPAKLPAKAKRAACGAAHSVVV 48
                99***********9988666778888654444************986 PP

  == domain 2  score: 30.2 bits;  conditional E-value: 5.9e-11
                 TTEEEEEE--GGGTTSS........SS-.--EEEEEE-GGGTTS-EEEEEEET CS
        RCC1   1 dGrVysWGrndyGqLGl........gtt.esvlvPtkveglsgnrvvkvacGd 44 
                 dG+  s+G + + qLGl        +++  ++++P+ ve+l+++rvv+vacG+
  KOO21600.1  51 DGSCMSFGDDRNLQLGLrpmtikemKSKiTRRSTPQPVELLRKRRVVDVACGG 103
                 78888************66655444333666699******************8 PP

  == domain 3  score: 24.3 bits;  conditional E-value: 4.1e-09
                 EEEEEE--GGGTTSSSS---EEEEEE-GGGTTS.............-EEEEEEETTEEEEE CS
        RCC1   3 rVysWGrndyGqLGlgttesvlvPtkveglsgn.............rvvkvacGddhtval 50 
                 ++y++G + +G LG +     + P+ +++ls+              rv++ acG +ht++l
  KOO21600.1 122 ELYGCGYGRWGALGGKAYTHIDEPKAISTLSKLrqwdetqkrvvniRVQALACGERHTAVL 182
                 79****************99999****9999889999999******************986 PP

  == domain 4  score: 35.4 bits;  conditional E-value: 1.3e-12
                 TTEEEEEE--GGGTTSSSS---EEEEEE-GGGTTS..-EEE.EEEETTEEEE CS
        RCC1   1 dGrVysWGrndyGqLGlgttesvlvPtkveglsgn..rvvk.vacGddhtva 49 
                 +G+ + WG+nd+GqLG+g+    ++P++v+++++    + k  acG + t++
  KOO21600.1 185 SGNAFVWGWNDHGQLGTGSLAGTHTPQLVKSPPELrfAILKgLACGPNSTAV 236
                 5999****************9999*****99998888666669999988876 PP

>> RCC1_2  Regulator of chromosome condensation (RCC1) repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.3   0.2     0.018   1.6e+02      24      30 .]       2       8 ..       1       8 [. 0.93
   2 !   18.1   0.1   1.9e-07    0.0017       4      27 ..      38      61 ..      35      64 .. 0.90
   3 !    6.6   1.2   0.00074       6.7       9      25 ..     109     128 ..      96     130 .. 0.74
   4 !   30.5   1.4   2.4e-11   2.2e-07       2      30 .]     170     198 ..     169     198 .. 0.95

  Alignments for each domain:
  == domain 1  score: 2.3 bits;  conditional E-value: 0.018
      RCC1_2 24 GsNsdGQ 30
                G+Ns+GQ
  KOO21600.1  2 GDNSHGQ 8 
                9*****9 PP

  == domain 2  score: 18.1 bits;  conditional E-value: 1.9e-07
      RCC1_2  4 vsaGdyHscaLtedGeVlcWGsNs 27
                 ++G+ Hs++++edG  +++G++ 
  KOO21600.1 38 AACGAAHSVVVLEDGSCMSFGDDR 61
                58********************86 PP

  == domain 3  score: 6.6 bits;  conditional E-value: 0.00074
      RCC1_2   9 yHscaLtedGe...VlcWGs 25 
                  H+++Lt+d+e   ++++G 
  KOO21600.1 109 GHTIFLTRDDEgdeLYGCGY 128
                 57*******9999****996 PP

  == domain 4  score: 30.5 bits;  conditional E-value: 2.4e-11
      RCC1_2   2 ksvsaGdyHscaLtedGeVlcWGsNsdGQ 30 
                  ++++G +H+ +L+++G+ + WG+N++GQ
  KOO21600.1 170 QALACGERHTAVLLASGNAFVWGWNDHGQ 198
                 679*************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (238 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       328  (0.0182944); expected 358.6 (0.02)
Passed bias filter:                      311  (0.0173462); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.43u 0.26s 00:00:00.69 Elapsed: 00:00:00.42
# Mc/sec: 1701.43
//
Query:       KOO21601.1  [L=562]
Description: electron-transferring-flavoprotein dehydrogenase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.4e-46  156.9   0.1      2e-46  156.4   0.1    1.3  1  ETF_QO          Electron transfer flavoprotein-ubiquinone oxi
    9.4e-08   32.2   0.1    5.2e-07   29.8   0.0    2.2  2  NAD_binding_8   NAD(P)-binding Rossmann-like domain
    1.2e-07   31.7   0.1    2.3e-05   24.2   0.0    2.3  2  DAO             FAD dependent oxidoreductase
    3.4e-05   23.3   0.1    6.1e-05   22.4   0.1    1.5  1  FAD_binding_3   FAD binding domain
    3.7e-05   23.1   0.0     0.0012   18.1   0.1    2.1  2  Thi4            Thi4 family
    4.5e-05   22.7   0.8     0.0031   16.6   0.4    2.1  2  FAD_binding_2   FAD binding domain
    0.00025   21.6   0.3       0.16   12.6   0.1    2.4  2  Pyr_redox       Pyridine nucleotide-disulphide oxidoreductase
    0.00034   21.1   3.5    0.00069   20.2   3.5    1.5  1  Fer4_7          4Fe-4S dicluster domain
    0.00062   19.8   0.1     0.0014   18.7   0.1    1.5  1  NAD_binding_9   FAD-NAD(P)-binding
      0.001   18.3   0.0     0.0015   17.8   0.0    1.4  1  Pyr_redox_2     Pyridine nucleotide-disulphide oxidoreductase
     0.0013   17.5   0.2     0.0021   16.8   0.2    1.3  1  HI0933_like     HI0933-like protein
     0.0017   18.5   3.3     0.0036   17.4   3.3    1.5  1  Fer4_9          4Fe-4S dicluster domain
     0.0023   18.4   1.1     0.0049   17.4   1.1    1.5  1  Fer4_17         4Fe-4S dicluster domain
      0.003   16.5   0.9     0.0063   15.4   0.1    1.8  2  Trp_halogenase  Tryptophan halogenase
  ------ inclusion threshold ------
       0.01   15.2   0.1      0.016   14.5   0.1    1.3  1  FAD_oxidored    FAD dependent oxidoreductase
      0.016   15.4   1.9      0.035   14.2   1.9    1.5  1  Fer4_21         4Fe-4S dicluster domain
      0.021   14.9   2.2      0.056   13.6   2.2    1.7  1  Fer4_2          4Fe-4S binding domain
      0.038   13.2   0.2      0.059   12.6   0.2    1.2  1  Pyr_redox_3     Pyridine nucleotide-disulphide oxidoreductase
      0.056   13.6   5.8      0.064   13.4   4.1    1.8  2  Fer4_10         4Fe-4S dicluster domain
       0.11   12.4   3.7      0.064   13.1   1.6    1.8  2  Fer4            4Fe-4S binding domain
       0.88    9.8   4.7        0.5   10.5   2.4    1.8  2  Fer4_6          4Fe-4S binding domain


Domain annotation for each model (and alignments):
>> ETF_QO  Electron transfer flavoprotein-ubiquinone oxidoreductase, 4Fe-4S
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  156.4   0.1   2.4e-49     2e-46       1     103 [.     457     559 ..     457     560 .. 0.99

  Alignments for each domain:
  == domain 1  score: 156.4 bits;  conditional E-value: 2.4e-49
                 SSSS--HHHHHHTTT-B--SSS--SEEESSTTHHHHTHHHHHS-THHHH-TTS-EEEEETTTTSSEEEEE-CCC--S--HHHHH-TT--EEE---STT- CS
      ETF_QO   1 gkltfdklssvflsgtnheedqpvhLklkdaevavkvnlekyagpeqryCPagvyeivedeeakekklqinaqnCvhCktCdikdpsqniewvvPeGgg 99 
                 g+++fd lssv+l+gtnhe dqp+hL+lk+ +v+ ++n++ ++gpeqr+CPagvye+  de +k++klqinaqnC+hCktCdik psqni+wvvPeGgg
  KOO21601.1 457 GVVSFDLLSSVALTGTNHEGDQPAHLTLKNDAVPLERNFAIFDGPEQRFCPAGVYEYHIDEATKKPKLQINAQNCIHCKTCDIKCPSQNIDWVVPEGGG 555
                 689************************************************************************************************ PP

                 C--- CS
      ETF_QO 100 GPky 103
                 GP+y
  KOO21601.1 556 GPAY 559
                 ***9 PP

>> NAD_binding_8  NAD(P)-binding Rossmann-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.8   0.0   6.1e-10   5.2e-07       1      40 [.      12      57 ..      12      74 .. 0.85
   2 ?   -1.6   0.0       3.9   3.4e+03      41      54 ..     296     309 ..     287     313 .. 0.77

  Alignments for each domain:
  == domain 1  score: 29.8 bits;  conditional E-value: 6.1e-10
                   EE--SHHHHHHHHHHHC...C...TEEEEEE-SSSSSSGGG-EECE CS
  NAD_binding_8  1 IvGaGlsGlvaAylLak...a...gfdvlllekrdrlGGraasyev 40
                   IvG+G sGl+aA +L++   +   +++v+++ek++ +G +  s  v
     KOO21601.1 12 IVGGGPSGLCAAIRLKQlcnEagvDYRVTVIEKASMVGAHTLSGAV 57
                   9***************95542667789*************999876 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 3.9
                    TTCEECTS---EEE CS
  NAD_binding_8  41 pgvrvdygahifhg 54 
                    +g r+ yga++++ 
     KOO21601.1 296 GGERLAYGARALNE 309
                    56999*****9987 PP

>> DAO  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.2   0.0   2.7e-08   2.3e-05       1      36 [.       9      52 ..       9      72 .. 0.83
   2 ?    5.2   0.0     0.015        13     144     186 ..     114     157 ..     106     171 .. 0.72

  Alignments for each domain:
  == domain 1  score: 24.2 bits;  conditional E-value: 2.7e-08
                EEEEECTSHHHHHHHHHHHHT....T....EEEEESSSSTTSSG CS
         DAO  1 dvviiGGGiiGlstAyeLarr....g....Vtllekgdiagsga 36
                d++i+GGG  Gl++A  L +     g    Vt++ek++ +g ++
  KOO21601.1  9 DILIVGGGPSGLCAAIRLKQLcneaGvdyrVTVIEKASMVGAHT 52
                8*****************5535434699*********9988665 PP

  == domain 2  score: 5.2 bits;  conditional E-value: 0.015
                 EHHHHHHHHHHHHHHTT-EEEESECEEEE.EEEE.TCEEEEEEEC CS
         DAO 144 dpakltaalaraaealGveilegtevtgl.eeed.gkvwgvertt 186
                    +++ +l ++ae+lGve++ g  ++++  +ed   v+gv  t+
  KOO21601.1 114 RLGEVVSWLGEQAEELGVEVFSGQGAVEVlYHEDgSTVKGV-ATN 157
                 5567899****************888886322332455555.333 PP

>> FAD_binding_3  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.4   0.1   7.1e-08   6.1e-05       1      52 [.       7      65 ..       7     161 .. 0.87

  Alignments for each domain:
  == domain 1  score: 22.4 bits;  conditional E-value: 7.1e-08
                   EEEEEEE--SHHHHHHHHHHH....HTTHH..EEEEESSSSSCCSS.S--EEEHHHHHH CS
  FAD_binding_3  1 etdVlIVGaGpaGlmlallLs....eaGvr..vvlvekrsttvvlp.radglnqrtmel 52
                   etd+lIVG+Gp+Gl +a  L+    eaGv+  v+++ek s    ++  + +l++r +e 
     KOO21601.1  7 ETDILIVGGGPSGLCAAIRLKqlcnEAGVDyrVTVIEKASMVGAHTlSGAVLEPRALEE 65
                   69***************8885222379998889*****998877776889999999875 PP

>> Thi4  Thi4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.1   0.1   1.5e-06    0.0012      17      60 ..       7      55 ..       1      62 [. 0.74
   2 ?    2.8   0.0     0.067        57      98     145 ..     117     164 ..     102     213 .. 0.71

  Alignments for each domain:
  == domain 1  score: 18.1 bits;  conditional E-value: 1.5e-06
                EEEEEEE--SHHHHHHHHHHHH...C..TTS-EEEEESSSS--TTTTTT CS
        Thi4 17 esDvvivGaGssGLtaayylak...k..pdlkvailersvspGGGawlG 60
                e+D++ivG+G+sGL aa  l +   +   d +v+++e+   +G  +  G
  KOO21601.1  7 ETDILIVGGGPSGLCAAIRLKQlcnEagVDYRVTVIEKASMVGAHTLSG 55
                89***************876432214466899*****987666555444 PP

  == domain 2  score: 2.8 bits;  conditional E-value: 0.067
                 HHHHHHHHHHHTSTTEEEEESEEEEEEEEETB.TEEEEEEEEEHHHHTC CS
        Thi4  98 lftstllskvlqlanvkllnavaveDlivreg.egvaGvvinwtlvela 145
                 +++s l  ++ +  +v ++ +  + +++ +e+ ++v+Gv +n   v+++
  KOO21601.1 117 EVVSWLGEQAEE-LGVEVFSGQGAVEVLYHEDgSTVKGVATNDVGVAKD 164
                 555666555555.78999998765555555544*********9988876 PP

>> FAD_binding_2  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   0.4   3.7e-06    0.0031       1      38 [.       9      52 ..       9      59 .. 0.83
   2 ?    4.4   0.0     0.019        16      96     183 ..      63     166 ..      56     208 .. 0.67

  Alignments for each domain:
  == domain 1  score: 16.6 bits;  conditional E-value: 3.7e-06
                   SEEEE--SHHHHHHHHHHHH....TTT..-EEEEESSSGGGSGG CS
  FAD_binding_2  1 DviViGsGlAGLaAAleaae....aGl..kvavvekeqefggat 38
                   D++++G+G +GL+AA+++++    aG   +v+v+ek++ +g +t
     KOO21601.1  9 DILIVGGGPSGLCAAIRLKQlcneAGVdyRVTVIEKASMVGAHT 52
                   99***************7643333887779******99888776 PP

  == domain 2  score: 4.4 bits;  conditional E-value: 0.019
                    HHHTT----BCCTS.....SB-EEE-TT-SST....EEEE-.STT-.......HHHHHHHHHHHHHHTCTEEEEESEEEEEEEE.CTT.EEEEEEE CS
  FAD_binding_2  96 Leelgvpfsrtedg.....pvdvrelGglsat....artlhdaadarr.etlvtghallarlvesarkagvdfqerteadeLiv.edg.rvtGavv 179
                    Leel+ ++++  +g     pv+v +lG l++t      +l+++++ +  + +v   +++  l e+a+++gv+++    a+e+++ edg  v G+  
     KOO21601.1  63 LEELFPDWKE--RGaplhtPVKVDRLGFLTETgrvpLPILPNTPADNHgNYIVRLGEVVSWLGEQAEELGVEVFSGQGAVEVLYhEDGsTVKGVAT 156
                    4555444444..22334449999999999999666522344455556668999*********************9999988887245588999866 PP

                    EET......T CS
  FAD_binding_2 180 enp......e 183
                    ++       +
     KOO21601.1 157 NDVgvakdgS 166
                    6446665441 PP

>> Pyr_redox  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.6   0.1   0.00019      0.16       2      35 ..      10      49 ..       9      68 .. 0.83
   2 ?    6.7   0.0     0.013        11      41      77 ..     117     155 ..     114     160 .. 0.84

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 0.00019
                EEEECSSHHHHHHHHHHHHTT......SEEEEEESSSSSS CS
   Pyr_redox  2 vvvvGgGyiglElAgalaelg......kkVtvversdkll 35
                +++vGgG +gl +A  l++l        +Vtv+e ++++ 
  KOO21601.1 10 ILIVGGGPSGLCAAIRLKQLCneagvdYRVTVIEKASMVG 49
                89***************66554444658******999876 PP

  == domain 2  score: 6.7 bits;  conditional E-value: 0.013
                 HHHHHHHHHHHHTTEEEECSEEEEEEEEETTS..EEEEE CS
   Pyr_redox  41 easkilqeklekngievllntkveeiegsedg..vesvk 77 
                 e+ ++l e+ e++g+ev  ++ ++e+  +edg  v++v 
  KOO21601.1 117 EVVSWLGEQAEELGVEVFSGQGAVEVLYHEDGstVKGVA 155
                 567899*********************888875566665 PP

>> Fer4_7  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.2   3.5   8.1e-07   0.00069      10      51 ..     504     544 ..     503     545 .. 0.88

  Alignments for each domain:
  == domain 1  score: 20.2 bits;  conditional E-value: 8.1e-07
      Fer4_7  10 aaCpvkaieldeeenekgtekveidpekClgCgaCvavCPtg 51 
                 + Cp+++ e++ +e + +++k++i++++C++C+ C   CP++
  KOO21601.1 504 RFCPAGVYEYHIDE-ATKKPKLQINAQNCIHCKTCDIKCPSQ 544
                 57*******99874.55669********************86 PP

>> NAD_binding_9  FAD-NAD(P)-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.7   0.1   1.6e-06    0.0014       2      37 ..      12      49 ..      11      57 .. 0.88

  Alignments for each domain:
  == domain 1  score: 18.7 bits;  conditional E-value: 1.6e-06
  NAD_binding_9  2 ivGaGprGlavlerLlara.kkkspleitlfdpsep.g 37
                   ivG+Gp+Gl+++ rL + + + + + ++t+++++++ g
     KOO21601.1 12 IVGGGPSGLCAAIRLKQLCnEAGVDYRVTVIEKASMvG 49
                   9****************99888999********88745 PP

>> Pyr_redox_2  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.8   0.0   1.8e-06    0.0015       2      43 ..       9      59 ..       8     182 .. 0.69

  Alignments for each domain:
  == domain 1  score: 17.8 bits;  conditional E-value: 1.8e-06
                 SEEEE--SHHHHHHHHHHHH......HTS-EEEEE...TTHCHHHCSHHHH CS
                 xxxxxxxxxxxxxxxxxxxx......xxxxxxxxx...xxxxxxxxxxxxx RF
  Pyr_redox_2  2 dvvviGgGpAGlaaaltlaq......agakvtlve...legtclnggclls 43
                 d++++GgGp Gl aa++l+q        ++vt++e     g++ + g +l 
   KOO21601.1  9 DILIVGGGPSGLCAAIRLKQlcneagVDYRVTVIEkasMVGAHTLSGAVLE 59
                 89******************998865599*****65553333333333332 PP

>> HI0933_like  HI0933-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   0.2   2.5e-06    0.0021       2      37 ..       9      50 ..       8      55 .. 0.80

  Alignments for each domain:
  == domain 1  score: 16.8 bits;  conditional E-value: 2.5e-06
                 SEEEE--SHHHHHHHHHH......HHTT--EEEE-SSSSS-H CS
  HI0933_like  2 dviviGgGaAGlmaAisa......akrgkrVlllekakklgr 37
                 d++++GgG++Gl aAi++      a  + rV+++eka+ +g 
   KOO21601.1  9 DILIVGGGPSGLCAAIRLkqlcneAGVDYRVTVIEKASMVGA 50
                 899*************99555533335689******999886 PP

>> Fer4_9  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.4   3.3   4.2e-06    0.0036      10      49 ..     504     544 ..     503     546 .. 0.75

  Alignments for each domain:
  == domain 1  score: 17.4 bits;  conditional E-value: 4.2e-06
      Fer4_9  10 eaCpagvv..vedaaerkarlraaseeaCigCgaCveaCpkg 49 
                 + Cpagv+    d+a++k +l++   ++Ci+C++C  +Cp++
  KOO21601.1 504 RFCPAGVYeyHIDEATKKPKLQINA-QNCIHCKTCDIKCPSQ 544
                 57****9943456666666666655.59************97 PP

>> Fer4_17  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.4   1.1   5.8e-06    0.0049      38      58 ..     520     543 ..     494     546 .. 0.72

  Alignments for each domain:
  == domain 1  score: 17.4 bits;  conditional E-value: 5.8e-06
     Fer4_17  38 eke....ekaslCieCgeCerkCPq 58 
                 + +     +a++Ci+C+ C+ kCP+
  KOO21601.1 520 K-KpklqINAQNCIHCKTCDIKCPS 543
                 2.2234369***************8 PP

>> Trp_halogenase  Tryptophan halogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.1   7.4e-06    0.0063       1      36 [.       9      47 ..       9      56 .. 0.88
   2 ?   -1.3   0.0      0.88   7.5e+02     157     213 ..     119     192 ..     110     204 .. 0.67

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 7.4e-06
                    EEEEE--SHHHHHHHHHHHHHTTTS...SEEEEEE-SSS CS
  Trp_halogenase  1 kivivGGGtaGwlaAaalakalkgk...levtlveseei 36
                    +i+ivGGG++G  aA+ l++  ++    ++vt++e++ +
      KOO21601.1  9 DILIVGGGPSGLCAAIRLKQLCNEAgvdYRVTVIEKASM 47
                    69******************9988776789*****9864 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 0.88
                     HHHHHHHHHHCT-EEEE--.EEEEEE-T.TS-EEEEEETT...............S-EEE-SEEEE-SGGG-II CS
  Trp_halogenase 157 akfLrrvaearGvtrvegk.vvevqlde.dgrveslrled...............greveadlfiDcsGfrgll 213
                       +L + ae+ Gv++ +g+  vev  +e    v+++ ++d               g e+ a l +   G rg l
      KOO21601.1 119 VSWLGEQAEELGVEVFSGQgAVEVLYHEdGSTVKGVATNDvgvakdgspkdsfqrGMELHAKLTLFGEGCRGSL 192
                     56788889999999998873456666663556888888886666666666666666666666666666666555 PP

>> FAD_oxidored  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.5   0.1   1.9e-05     0.016       1      41 [.       9      55 ..       9      67 .. 0.69

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 1.9e-05
  FAD_oxidored  1 DvvVvGGgpaGvaAAiaAara....Ga..kvlLveergvlGGlltsg 41
                  D+++vGGgp+G++AAi  ++     G   +v ++e+  ++G  + sg
    KOO21601.1  9 DILIVGGGPSGLCAAIRLKQLcneaGVdyRVTVIEKASMVGAHTLSG 55
                  9***************8665311113233677777777776555555 PP

>> Fer4_21  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   1.9   4.1e-05     0.035       2      24 ..     525     547 ..     524     554 .. 0.84

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 4.1e-05
     Fer4_21   2 ridedkCigCgkCliaCedtshq 24 
                 +i+ ++Ci+C+ C i C+ + ++
  KOO21601.1 525 QINAQNCIHCKTCDIKCPSQNID 547
                 5999*************976655 PP

>> Fer4_2  4Fe-4S binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   2.2   6.6e-05     0.056       2      21 ..     523     542 ..     522     543 .. 0.85

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 6.6e-05
      Fer4_2   2 pvvvdtdrCigCgaCvsa.CP 21 
                 + ++++++Ci+C++C +  CP
  KOO21601.1 523 KLQINAQNCIHCKTC-DIkCP 542
                 6899***********.55599 PP

>> Pyr_redox_3  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.2   6.9e-05     0.059       1      33 [.      11      48 ..      11      52 .. 0.73

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 6.9e-05
  Pyr_redox_3  1 iIiGaGPaGlaaaielkkagl.....edylilEkgnig 33
                 +I+G+GP Gl aai lk++        +++++Ek++++
   KOO21601.1 11 LIVGGGPSGLCAAIRLKQLCNeagvdYRVTVIEKASMV 48
                 6***************9864312223367889988765 PP

>> Fer4_10  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.3   6.6     0.003       2.5      37      56 .]     523     542 ..     503     542 .. 0.51
   2 ?   13.4   4.1   7.5e-05     0.064       2      22 ..     524     544 ..     523     555 .. 0.86

  Alignments for each domain:
  == domain 1  score: 8.3 bits;  conditional E-value: 0.003
     Fer4_10  37 avrkkvekCtgcgaCveaCP 56 
                 + +++ ++C++c  C  +CP
  KOO21601.1 523 KLQINAQNCIHCKTCDIKCP 542
                 33445555555555555555 PP

  == domain 2  score: 13.4 bits;  conditional E-value: 7.5e-05
     Fer4_10   2 vvidddtCirCgkCvkaCPad 22 
                 ++i+++ Ci+C++C   CP++
  KOO21601.1 524 LQINAQNCIHCKTCDIKCPSQ 544
                 6799***************93 PP

>> Fer4  4Fe-4S binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.0       7.4   6.4e+03      17      22 ..     505     510 ..     504     512 .. 0.77
   2 ?   13.1   1.6   7.5e-05     0.064       2      21 ..     525     544 ..     524     547 .. 0.87

  Alignments for each domain:
  == domain 1  score: -2.7 bits;  conditional E-value: 7.4
                 HSTTTE CS
        Fer4  17 vCPvgA 22 
                  CP g+
  KOO21601.1 505 FCPAGV 510
                 5**997 PP

  == domain 2  score: 13.1 bits;  conditional E-value: 7.5e-05
                 EEETTTSSS-THHHHHSTTT CS
        Fer4   2 videekCigCGaCvevCPvg 21 
                 +i+   Ci+C++C   CP  
  KOO21601.1 525 QINAQNCIHCKTCDIKCPSQ 544
                 69999*************76 PP

>> Fer4_6  4Fe-4S binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.0         8   6.8e+03      19      23 ..     506     510 ..     504     511 .. 0.82
   2 ?   10.5   2.4   0.00058       0.5       3      23 ..     525     545 ..     523     546 .. 0.87

  Alignments for each domain:
  == domain 1  score: -2.5 bits;  conditional E-value: 8
      Fer4_6  19 CPega 23 
                 CP+g+
  KOO21601.1 506 CPAGV 510
                 ***98 PP

  == domain 2  score: 10.5 bits;  conditional E-value: 0.00058
      Fer4_6   3 eidpdkCigCgdCvrvCPega 23 
                 +i++++Ci+C  C + CP + 
  KOO21601.1 525 QINAQNCIHCKTCDIKCPSQN 545
                 79***********99999875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (562 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       378  (0.0210832); expected 358.6 (0.02)
Passed bias filter:                      321  (0.017904); expected 358.6 (0.02)
Passed Vit filter:                        58  (0.00323498); expected 17.9 (0.001)
Passed Fwd filter:                        22  (0.00122706); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              21  [number of targets reported over threshold]
# CPU time: 0.58u 0.25s 00:00:00.83 Elapsed: 00:00:00.44
# Mc/sec: 3877.33
//
Query:       KOO21602.1  [L=445]
Description: coiled-coil domain-containing protein 55 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.7e-27   95.9  21.6    1.7e-27   95.9  21.6    1.9  2  DUF2040   Coiled-coil domain-containing protein 55 (DUF2040)


Domain annotation for each model (and alignments):
>> DUF2040  Coiled-coil domain-containing protein 55 (DUF2040)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   95.9  21.6   9.6e-32   1.7e-27       2     120 ..     185     300 ..     184     301 .. 0.93
   2 ?   -2.7   1.0      0.32   5.7e+03      63      77 ..     431     445 .]     417     445 .] 0.55

  Alignments for each domain:
  == domain 1  score: 95.9 bits;  conditional E-value: 9.6e-32
     DUF2040   2 kkeaekaleeDpsvydYDevYDslkeakekkkakkkeekkerkpkYienLlkaaekRkrereraeerklqkereaegdefadkekFVTsaYkkkleelk 100
                 ++++++ale+D+s++dYD +YD++++++  +k+k k   +e+ +kYi++L++a+++R+ e+e++ erk+ ke e+e + +adke+F TsaY++kl+ ++
  KOO21602.1 185 EAAQKAALEQDASIFDYDDAYDAMQQERVVAKEKPK---QEKSAKYIGALMQAHKVREIENEKVFERKMVKEAEEEAHLYADKERFLTSAYRAKLAARE 280
                 567999*******************99887765544...4569******************************************************** PP

     DUF2040 101 kleeeekrreeeeekkdvtk 120
                 + e+e +++++e++k+dvt+
  KOO21602.1 281 EYEAELAKQDAEDAKNDVTQ 300
                 ******************97 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 0.32
     DUF2040  63 eraeerklqkereae 77 
                 + a+er l+++r++e
  KOO21602.1 431 QSARERYLERKRQRE 445
                 345566666666554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (445 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1288  (0.0718389); expected 358.6 (0.02)
Passed bias filter:                      367  (0.0204696); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.57u 0.27s 00:00:00.84 Elapsed: 00:00:00.45
# Mc/sec: 2992.76
//
Query:       KOO21603.1  [L=777]
Description: gpn-loop gtpase 3 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    7.3e-43  147.1   0.0      1e-42  146.6   0.0    1.2  1  ATP_bind_1  Conserved hypothetical ATP binding protein
    7.8e-16   57.9  30.6    4.3e-15   55.5  30.6    1.9  1  SSF         Sodium:solute symporter family
  ------ inclusion threshold ------
        0.1   11.9   0.0        0.1   11.9   0.0    3.0  3  CCB1        Cofactor assembly of complex C subunit B


Domain annotation for each model (and alignments):
>> ATP_bind_1  Conserved hypothetical ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  146.6   0.0   1.7e-46     1e-42      72     241 .]       1     172 [.       1     172 [. 0.96

  Alignments for each domain:
  == domain 1  score: 146.6 bits;  conditional E-value: 1.7e-46
  ATP_bind_1  72 leflresldwldeeleke.eddyllfDtPGQielfthseslakiveeLes.efalvvvyLvDsqrltdptkfisgllsalsamlrlelPhvvvlnkfDl 168
                 +e+l++++dwl++ele+   d+y++fD+PGQiel+ h++++a ++ +L++  +++++ yL+Dsq+++d++kf+sg+l +lsam  lelPhv+vl+k+Dl
  KOO21603.1   1 MEYLVDNIDWLEDELEEIgPDEYIIFDCPGQIELYSHVPAMATVIGALQRlGYRVCASYLLDSQFVADVAKFVSGVLCCLSAMTALELPHVNVLSKCDL 99 
                 8**************999999****************************************************************************** PP

  ATP_bind_1 169 lkeklekeleffedvealslllekee...ekykklaeaiaelleefalvlrflplssekeesiedllslidealqe 241
                 l   ++ +l+ f + +a  l   + +     + +l++ai+el++e ++v +flpl+ ++ e+i+ +l++id+a+q+
  KOO21603.1 100 LP--SRHALDEFLEADAAALSGMLRMgtaPSFYRLNAAICELIDEWSMV-QFLPLDPKDSETIDLILQQIDNAVQY 172
                 *9..889999999999887777766676889999***************.***********************996 PP

>> SSF  Sodium:solute symporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.5  30.6   7.1e-19   4.3e-15       2     406 .]     270     681 ..     269     681 .. 0.78

  Alignments for each domain:
  == domain 1  score: 55.5 bits;  conditional E-value: 7.1e-19
         SSF   2 flagrsltgfvlglslaasnisaasfvGlaGavaasGlavvllelgalllvlllllllaerlrna..galTlpdylskRfkgkrilvylsalslllvit 98 
                 + a  s + + + ls ++s i+a+ +   + a+   G   ++     +++ lll++l+a+ +rn+    +Tl++y+  Rf+     vy++ +s++ +++
  KOO21603.1 270 MAARNSQGLVSMTLSYFVSGIGAWVIFAAPQAAVIGGWPALVGYAVSTVVPLLLFGLIAPPMRNQlpKGFTLNEYVYGRFGTPC-TVYFAFVSMF-YMV 366
                 444445677889*************************977666566677788889999*****6533679***********999.9999988866.677 PP

         SSF  99 lklsvdlvggakl......ielalG...ln.....yeta...vlllaaltalYtviGGllAvvytdtiqavlmlvgalilliivllevG.gleslvekl 179
                 l+l+++l ++ +l      i  + G   ++     + ta   ++ + ++t  YtviGGl  ++ td +q+v +lv +++++i +  e+G g ++  +++
  KOO21603.1 367 LYLAAELSSASALatglslIT-VQGstwWQnenvfLPTAvspIVGMSVITLFYTVIGGLPVSIVTDRVQGVGVLVLTILVTIAAYAEAGvGDQASWDEV 464
                 889988888877722211122.112111221122233441124556789999*************************************9999999988 PP

         SSF 180 keaapkvvdlltpdslkllrdpltalslwlglvlGvaglphilvRflaakdakailkgvlk..ltivlilvligmisiilfaiklagavpkavgtevgv 276
                        + ++ p+ +    +++ a+sl +g+     +     +R+ aa++ ++++++  +  +++++i++l+g+   i ++  ++ + p++ g +   
  KOO21603.1 465 VGHGI--SPVYVPTDY--GNSFAVAISLIIGVTCANLVHAGYWQRIWAAESNRTVVHATYYssALTIVIMILVGITGWIAYSHFVILMSPNVPGGDP-- 557
                 65433..446666665..5688888888888888888889999************999765116778888888888888888888888888888765.. PP

         SSF 277 sniaypeLvvkllpnllaGlllavmlAaimstltslllsassaftkDlYkkirrkasakekelvgvsriivl.vvislaillavqeeqkgvlklvelaf 374
                 s + +p L++  ++++ a +++   ++ i st ++ l s+ +a+   + k  ++++      + ++s++++l v+  +  +l++ + q+ +l+l  la 
  KOO21603.1 558 SFLSVPWLINTFMGEGWAVVVMILGISMIASTCDT-LQSGMTALLWPFAKLCFPNG----SGIFQLSFVVFLtVLFNVPPVLLALSGQS-ILQLFLLA- 649
                 66899*********************999999986.57888999999999999999....78999999999834456666677777777.89988765. PP

         SSF 375 aglasavlavillalfwkrvneqGAlagliiG 406
                 + la+ v+a + +++fwk++   GAlag++ G
  KOO21603.1 650 DLLAAGVVAPLFMGVFWKKCHPIGALAGSVGG 681
                 7888888889999***************9877 PP

>> CCB1  Cofactor assembly of complex C subunit B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   1.7e-05       0.1       3      51 ..     238     286 ..     236     292 .. 0.94
   2 ?    0.1   0.6     0.076   4.5e+02      65     120 ..     396     451 ..     379     465 .. 0.81
   3 ?   -2.4   0.3      0.42   2.5e+03       3      22 ..     521     540 ..     518     550 .. 0.73

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 1.7e-05
        CCB1   3 lsstLlLtlLllvGLfffirasvKdrteevtleseeseeelleelkeyl 51 
                 +++tL+L l+l++G+f   r   K+ t++  ++++++ + l++   +y+
  KOO21603.1 238 IYATLGLVLILTIGFFLQSRENRKNATDKDSYMAARNSQGLVSMTLSYF 286
                 799*********************************9999999999998 PP

  == domain 2  score: 0.1 bits;  conditional E-value: 0.076
        CCB1  65 ketvtfeGlvapslflAifLtllaalgllclaLVlsilvpelgnlflllvllsPlA 120
                 +e v +   v+p +++ ++  +++++g l +++V   +      ++ +lv+++ +A
  KOO21603.1 396 NENVFLPTAVSPIVGMSVITLFYTVIGGLPVSIVTDRVQGVGVLVLTILVTIAAYA 451
                 6677778889999999999999*****99999998876655555666777777776 PP

  == domain 3  score: -2.4 bits;  conditional E-value: 0.42
        CCB1   3 lsstLlLtlLllvGLfffir 22 
                 +ss+L + +++lvG+   i 
  KOO21603.1 521 YSSALTIVIMILVGITGWIA 540
                 67788888888888776654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (777 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       778  (0.0433934); expected 358.6 (0.02)
Passed bias filter:                      340  (0.0189637); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.66u 0.28s 00:00:00.94 Elapsed: 00:00:00.45
# Mc/sec: 5174.93
//
Query:       KOO21604.1  [L=716]
Description: hypothetical protein Ctob_001268 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.2e-21   74.7   5.3    6.3e-05   22.6   0.1    4.6  4  EF-hand_6   EF-hand domain
    2.7e-20   70.3   7.6    0.00035   19.9   0.6    4.5  4  EF-hand_1   EF hand
    2.4e-14   53.6   5.3    8.2e-05   23.0   0.3    4.0  4  EF-hand_7   EF-hand domain pair
    3.6e-14   52.3   4.9    4.4e-06   26.4   0.2    3.8  3  EF-hand_8   EF-hand domain pair
      1e-13   50.1  10.8     0.0033   16.9   0.2    4.5  4  EF-hand_5   EF hand
     0.0012   19.0   0.8        1.5    9.0   0.3    2.6  2  p25-alpha   p25-alpha
  ------ inclusion threshold ------
      0.014   15.6   1.4      0.049   13.8   0.9    2.1  2  DUF2666     Protein of unknown function (DUF2666)
      0.032   14.2   1.4        4.4    7.3   0.0    3.2  3  EF-hand_4   Cytoskeletal-regulatory complex EF hand
       0.14   12.1   0.2         24    4.8   0.0    3.5  4  Caleosin    Caleosin related protein
       0.32   10.9   0.8        6.1    6.8   0.1    2.7  3  EF-hand_10  EF hand
        2.4    6.7   7.3       0.41    9.2   2.8    1.8  2  DUF3138     Protein of unknown function (DUF3138)


Domain annotation for each model (and alignments):
>> EF-hand_6  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   0.0   3.6e-06    0.0059       3      27 ..     479     503 ..     477     506 .. 0.87
   2 !   22.6   0.1   3.9e-08   6.3e-05       3      28 ..     516     541 ..     514     550 .. 0.88
   3 !   15.9   0.0   5.5e-06     0.009       4      27 ..     613     636 ..     610     639 .. 0.83
   4 !   18.9   0.3     6e-07   0.00098       1      27 [.     647     673 ..     647     677 .. 0.92

  Alignments for each domain:
  == domain 1  score: 16.4 bits;  conditional E-value: 3.6e-06
   EF-hand_6   3 reaFklfDkdgdGkidaeElrkalr 27 
                 +e+ + +D++gdG i+++E+r a r
  KOO21604.1 479 EELVRSWDRNGDGVINKNEFRIAVR 503
                 6788999**************9998 PP

  == domain 2  score: 22.6 bits;  conditional E-value: 3.9e-08
   EF-hand_6   3 reaFklfDkdgdGkidaeElrkalrk 28 
                 + +F+++D+d++G++d +E+++al+k
  KOO21604.1 516 DGLFDKIDNDKSGELDLSEIKAALKK 541
                 568**********************4 PP

  == domain 3  score: 15.9 bits;  conditional E-value: 5.5e-06
   EF-hand_6   4 eaFklfDkdgdGkidaeElrkalr 27 
                 e+  ++Dkdg+G +d++E+r  + 
  KOO21604.1 613 ELVGQWDKDGNGVVDKKEFREQIH 636
                 667799*************99876 PP

  == domain 4  score: 18.9 bits;  conditional E-value: 6e-07
   EF-hand_6   1 elreaFklfDkdgdGkidaeElrkalr 27 
                 e++++F  +D++gdG++d +El+ al+
  KOO21604.1 647 EMDSLFVSLDRNGDGSLDLDELKVALQ 673
                 6899*******************9998 PP

>> EF-hand_1  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.2   0.0   7.5e-07    0.0012       2      27 ..     478     503 ..     477     505 .. 0.88
   2 !   19.9   0.6   2.2e-07   0.00035       1      29 []     514     542 ..     514     542 .. 0.95
   3 !   14.4   0.0   1.3e-05     0.021       9      24 ..     618     633 ..     611     638 .. 0.88
   4 !   19.4   0.1   3.2e-07   0.00052       1      27 [.     647     673 ..     647     675 .. 0.91

  Alignments for each domain:
  == domain 1  score: 18.2 bits;  conditional E-value: 7.5e-07
                 HHHHHHHHTTTSSSEEEHHHHHHHHH CS
   EF-hand_1   2 lkeiFrefDkDgdGkIdfeEfkellk 27 
                 ++e+ r  D++gdG I+++Ef+ +++
  KOO21604.1 478 VEELVRSWDRNGDGVINKNEFRIAVR 503
                 67888999**************9886 PP

  == domain 2  score: 19.9 bits;  conditional E-value: 2.2e-07
                 HHHHHHHHHTTTSSSEEEHHHHHHHHHHH CS
   EF-hand_1   1 elkeiFrefDkDgdGkIdfeEfkellkkl 29 
                 e++ +F+++D D++G +d++E k++lkkl
  KOO21604.1 514 EIDGLFDKIDNDKSGELDLSEIKAALKKL 542
                 68899**********************96 PP

  == domain 3  score: 14.4 bits;  conditional E-value: 1.3e-05
                 HTTTSSSEEEHHHHHH CS
   EF-hand_1   9 fDkDgdGkIdfeEfke 24 
                  DkDg+G +d++Ef+e
  KOO21604.1 618 WDKDGNGVVDKKEFRE 633
                 6*************97 PP

  == domain 4  score: 19.4 bits;  conditional E-value: 3.2e-07
                 HHHHHHHHHTTTSSSEEEHHHHHHHHH CS
   EF-hand_1   1 elkeiFrefDkDgdGkIdfeEfkellk 27 
                 e++ +F  +D++gdG +d++E+k +l+
  KOO21604.1 647 EMDSLFVSLDRNGDGSLDLDELKVALQ 673
                 67899******************9997 PP

>> EF-hand_7  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.0   6.8e-06     0.011      43      70 ..     475     502 ..     449     503 .. 0.78
   2 !   20.5   0.7   2.9e-07   0.00048       6      68 ..     517     633 ..     512     636 .. 0.86
   3 !   23.0   0.3     5e-08   8.2e-05      12      69 ..     619     671 ..     610     673 .. 0.87
   4 !   14.4   0.1   2.5e-05      0.04       7      29 ..     651     673 ..     646     694 .. 0.78

  Alignments for each domain:
  == domain 1  score: 16.2 bits;  conditional E-value: 6.8e-06
   EF-hand_7  43 deelellfkefDtdkdGvisfdEFlkly 70 
                 + ++e+l++ +D ++dGvi+ +EF+ ++
  KOO21604.1 475 KVKVEELVRSWDRNGDGVINKNEFRIAV 502
                 34599*******************9886 PP

  == domain 2  score: 20.5 bits;  conditional E-value: 2.9e-07
   EF-hand_7   6 eaFkelDtdgdgyldkeellrllrkifqga.......................................................gegsklsdeelell 49 
                   F+++D+d++g ld +e++ +l+k+ + a                                                       +  +k +  +l +l
  KOO21604.1 517 GLFDKIDNDKSGELDLSEIKAALKKLQERAqnvgasidqeqakaaaligvaqvfqtaaaataeyeaaeqkatqmkdnpslgkrvgDAIFK-RNVKLGEL 614
                 57***********************99999***********************************9999988888877666654322222.33668899 PP

   EF-hand_7  50 fkefDtdkdGvisfdEFlk 68 
                 +  +D+d++Gv++  EF++
  KOO21604.1 615 VGQWDKDGNGVVDKKEFRE 633
                 *****************97 PP

  == domain 3  score: 23.0 bits;  conditional E-value: 5e-08
   EF-hand_7  12 DtdgdgyldkeellrllrkifqgagegsklsdeelellfkefDtdkdGvisfdEFlkl 69 
                 D+dg+g +dk e+++ ++         +++++ e++ lf  +D ++dG++++dE++ +
  KOO21604.1 619 DKDGNGVVDKKEFREQIH---L--MGIKEIHPREMDSLFVSLDRNGDGSLDLDELKVA 671
                 9***********996554...3..6777788899********************9765 PP

  == domain 4  score: 14.4 bits;  conditional E-value: 2.5e-05
   EF-hand_7   7 aFkelDtdgdgyldkeellrllr 29 
                  F +lD++gdg+ld +el+ +l+
  KOO21604.1 651 LFVSLDRNGDGSLDLDELKVALQ 673
                 6999*************997665 PP

>> EF-hand_8  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.5   0.0     3e-05     0.048      27      49 ..     477     499 ..     465     505 .. 0.90
   2 !   12.7   0.1   5.4e-05     0.089      22      54 ..     509     541 ..     499     542 .. 0.88
   3 !   26.4   0.2   2.7e-09   4.4e-06       2      53 ..     623     673 ..     622     675 .. 0.94

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 3e-05
   EF-hand_8  27 evdilfrefDtdgdGkisfeEFc 49 
                 +v++l+r  D++gdG+i+++EF 
  KOO21604.1 477 KVEELVRSWDRNGDGVINKNEFR 499
                 6899******************5 PP

  == domain 2  score: 12.7 bits;  conditional E-value: 5.4e-05
   EF-hand_8  22 glseeevdilfrefDtdgdGkisfeEFcvller 54 
                  ++  e+d lf+++D d++G +++ E  + l++
  KOO21604.1 509 EINVLEIDGLFDKIDNDKSGELDLSEIKAALKK 541
                 38999*********************9999886 PP

  == domain 3  score: 26.4 bits;  conditional E-value: 2.7e-09
   EF-hand_8   2 kgkItreelrrilrilglkkglseeevdilfrefDtdgdGkisfeEFcvlle 53 
                 +g++++ e+r+ + ++g+k+ + + e+d+lf  +D++gdG ++++E  v l+
  KOO21604.1 623 NGVVDKKEFREQIHLMGIKE-IHPREMDSLFVSLDRNGDGSLDLDELKVALQ 673
                 79*********999999996.***************************9997 PP

>> EF-hand_5  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.1   0.0   3.2e-05     0.052       9      22 ..     486     499 ..     485     502 .. 0.94
   2 !   12.9   0.7   3.6e-05     0.059       4      23 ..     518     537 ..     515     540 .. 0.86
   3 !   11.1   0.1   0.00013      0.21       9      23 ..     619     633 ..     617     636 .. 0.92
   4 !   16.9   0.2     2e-06    0.0033       2      22 ..     649     669 ..     648     672 .. 0.88

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 3.2e-05
                 -SS-SSCE-HHHHH CS
   EF-hand_5   9 DlNgDGkIskeELk 22 
                 D NgDG I+k E++
  KOO21604.1 486 DRNGDGVINKNEFR 499
                 99***********7 PP

  == domain 2  score: 12.9 bits;  conditional E-value: 3.6e-05
                 HHHHH-SS-SSCE-HHHHHH CS
   EF-hand_5   4 tFqaiDlNgDGkIskeELkt 23 
                 +F++iD +++G ++ +E k+
  KOO21604.1 518 LFDKIDNDKSGELDLSEIKA 537
                 8****************986 PP

  == domain 3  score: 11.1 bits;  conditional E-value: 0.00013
                 -SS-SSCE-HHHHHH CS
   EF-hand_5   9 DlNgDGkIskeELkt 23 
                 D++g G ++k E+++
  KOO21604.1 619 DKDGNGVVDKKEFRE 633
                 9************86 PP

  == domain 4  score: 16.9 bits;  conditional E-value: 2e-06
                 HHHHHHH-SS-SSCE-HHHHH CS
   EF-hand_5   2 kdtFqaiDlNgDGkIskeELk 22 
                 + +F  +D NgDG ++ +ELk
  KOO21604.1 649 DSLFVSLDRNGDGSLDLDELK 669
                 458999**************8 PP

>> p25-alpha  p25-alpha
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.0   0.3    0.0009       1.5      36      86 ..     506     557 ..     501     592 .. 0.76
   2 !    7.6   0.0    0.0024       3.9      31      95 ..     634     700 ..     620     712 .. 0.84

  Alignments for each domain:
  == domain 1  score: 9.0 bits;  conditional E-value: 0.0009
   p25-alpha  36 d.kkvtstdvDiiFsKvkaksarkitfeqfkealeelaekkfkkkkkeeele 86 
                 + k+++  ++D +F K+ + ++ +++++++k+al++l e++ + + + ++++
  KOO21604.1 506 GfKEINVLEIDGLFDKIDNDKSGELDLSEIKAALKKLQERAQNVGASIDQEQ 557
                 55899999*****************************998655555544443 PP

  == domain 2  score: 7.6 bits;  conditional E-value: 0.0024
   p25-alpha  31 Dckiid.kkvtstdvDiiFsKvkaksarkitfeqfkealeelaekkfkkkkkeeel.eliekliegk 95 
                 + ++++ k++  +++D +F     +++ ++++++ k al+ l + +++++ ++e+  + + kl+ ++
  KOO21604.1 634 QIHLMGiKEIHPREMDSLFVSLDRNGDGSLDLDELKVALQLLRDTAVREALDVEAQaSAALKLCVAS 700
                 5678899**************************************9999999998854455555554 PP

>> DUF2666  Protein of unknown function (DUF2666)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.0       3.1     5e+03      89     108 ..     323     342 ..     307     345 .. 0.75
   2 ?   13.8   0.9     3e-05     0.049       6     102 ..     463     559 ..     460     571 .. 0.80

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 3.1
                 ...........---HHHHHH CS
     DUF2666  89 tkklnkitdskegkeilkvi 108
                  + l+ +t +k+gke+lk++
  KOO21604.1 323 QQPLGWVTREKHGKELLKTM 342
                 45689999*******99976 PP

  == domain 2  score: 13.8 bits;  conditional E-value: 3e-05
                 EEEEETTEEEEEEEE--TTS-HHHH..HHHHHHHHHHHHHHHHHHTT--HHHHHHHTTT--S--S....HHHHHHHHHHHHT-.............--- CS
     DUF2666   6 ftakkgkWivvkklkiDektedlei..arlLasieetvskkikdylpfDlekleeiadeikkkkkgrvkeedisevleklkspattkklnkitdskegk 102
                 f++k  + +v kk+k++e  +  +     +++  e  ++ + + + ++++ ++ + +d+i + k g +  ++i+ +l+kl++ a  + +++  d+++ k
  KOO21604.1 463 FESKLANVLVQKKVKVEELVRSWDRngDGVINKNEFRIAVRGYGFKEINVLEIDGLFDKIDNDKSGELDLSEIKAALKKLQERA--QNVGASIDQEQAK 559
                 78888888999999999977766541156888878889999999************************************9985..4456555555555 PP

>> EF-hand_4  Cytoskeletal-regulatory complex EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.1   0.1     0.028        45      28      70 ..     464     503 ..     440     514 .. 0.88
   2 ?   -0.8   0.1      0.89   1.4e+03      48      70 ..     518     540 ..     508     556 .. 0.79
   3 ?    7.3   0.0    0.0027       4.4      46      90 ..     649     693 ..     618     710 .. 0.80

  Alignments for each domain:
  == domain 1  score: 4.1 bits;  conditional E-value: 0.028
   EF-hand_4  28 gdkvapvlknskleedklekiwdladidedgkldfeefciamr 70 
                 ++k+a+vl + k++ ++l + wd    + dg ++ +ef ia+r
  KOO21604.1 464 ESKLANVLVQKKVKVEELVRSWD---RNGDGVINKNEFRIAVR 503
                 579999****************6...579***********998 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 0.89
   EF-hand_4  48 iwdladidedgkldfeefciamr 70 
                 ++d  d d+ g+ld+ e   a++
  KOO21604.1 518 LFDKIDNDKSGELDLSEIKAALK 540
                 56777888899****99887776 PP

  == domain 3  score: 7.3 bits;  conditional E-value: 0.0027
   EF-hand_4  46 ekiwdladidedgkldfeefciamrlifdlvngeikdvPselPew 90 
                 ++++   d + dg+ld++e+ +a++l+ d   +e  dv ++   +
  KOO21604.1 649 DSLFVSLDRNGDGSLDLDELKVALQLLRDTAVREALDVEAQASAA 693
                 55566668899******************9988888887766554 PP

>> Caleosin  Caleosin related protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.8   0.0     0.015        24       9      36 ..     481     508 ..     473     514 .. 0.82
   2 ?    2.4   0.0     0.079   1.3e+02      96     132 ..     516     552 ..     511     564 .. 0.85
   3 ?   -1.0   0.0      0.92   1.5e+03      10      34 ..     615     639 ..     608     655 .. 0.79
   4 ?   -1.8   0.0       1.6   2.6e+03      92     121 ..     645     674 ..     642     699 .. 0.76

  Alignments for each domain:
  == domain 1  score: 4.8 bits;  conditional E-value: 0.015
    Caleosin   9 HvaFfDrdkdGiiypldtyrgfralgfn 36 
                  v  +Dr+ dG+i   +   ++r  gf+
  KOO21604.1 481 LVRSWDRNGDGVINKNEFRIAVRGYGFK 508
                 5778**********99999999888876 PP

  == domain 2  score: 2.4 bits;  conditional E-value: 0.079
    Caleosin  96 eeifskyakekkdaltlkevlellkgqrealDlfgwl 132
                 + +f+k +++k+++l l+e+++ lk+ +e +  +g +
  KOO21604.1 516 DGLFDKIDNDKSGELDLSEIKAALKKLQERAQNVGAS 552
                 679********************99988877777765 PP

  == domain 3  score: -1.0 bits;  conditional E-value: 0.92
    Caleosin  10 vaFfDrdkdGiiypldtyrgfralg 34 
                 v  +D+d +G++   +  + ++ +g
  KOO21604.1 615 VGQWDKDGNGVVDKKEFREQIHLMG 639
                 5669******998887766666555 PP

  == domain 4  score: -1.8 bits;  conditional E-value: 1.6
    Caleosin  92 pqkfeeifskyakekkdaltlkevlellkg 121
                 p++++++f   +++ +++l l+e++  l+ 
  KOO21604.1 645 PREMDSLFVSLDRNGDGSLDLDELKVALQL 674
                 778899999999999999999999876654 PP

>> EF-hand_10  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.0   0.0       8.6   1.4e+04      25      43 ..     480     498 ..     479     499 .. 0.83
   2 ?    6.8   0.1    0.0037       6.1      25      49 ..     517     541 ..     509     542 .. 0.89
   3 ?    1.7   0.0      0.14   2.3e+02      25      46 ..     650     671 ..     619     675 .. 0.84

  Alignments for each domain:
  == domain 1  score: -4.0 bits;  conditional E-value: 8.6
  EF-hand_10  25 kLFkkcDkSksgrLegeEi 43 
                 +L +  D+  +g ++ +E+
  KOO21604.1 480 ELVRSWDRNGDGVINKNEF 498
                 6778889999999999997 PP

  == domain 2  score: 6.8 bits;  conditional E-value: 0.0037
  EF-hand_10  25 kLFkkcDkSksgrLegeEieeFykl 49 
                  LF k D+ ksg L+ +Ei+  +k+
  KOO21604.1 517 GLFDKIDNDKSGELDLSEIKAALKK 541
                 69*****************987665 PP

  == domain 3  score: 1.7 bits;  conditional E-value: 0.14
  EF-hand_10  25 kLFkkcDkSksgrLegeEieeF 46 
                 +LF   D+  +g+L+  E++  
  KOO21604.1 650 SLFVSLDRNGDGSLDLDELKVA 671
                 799999*********9999865 PP

>> DUF3138  Protein of unknown function (DUF3138)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.1      0.43     7e+02      48      78 ..     421     455 ..     411     485 .. 0.51
   2 ?    9.2   2.8   0.00025      0.41      24      88 ..     529     592 ..     508     611 .. 0.66

  Alignments for each domain:
  == domain 1  score: -1.5 bits;  conditional E-value: 0.43
     DUF3138  48 laaakaaaGgkissqkaaaaaaaa....aeaaaal 78 
                 ++a+ +a G ++ sq +aa   +a    ++ a  +
  KOO21604.1 421 MTAKAGAGGKGAKSQYSAAKLWQAaeqiTRRAEGF 455
                 44444444445667777775545422224444433 PP

  == domain 2  score: 9.2 bits;  conditional E-value: 0.00025
     DUF3138  24 adrikalkaqltalqrqvkelraalaaakaaaGgkissqk...aaaaaaaaaeaaaalteddvaqlke 88 
                   ++  +ka l++lq++ +++ a++  ++a a + i+  +   +aaaa+a  e     +e++ +q+k+
  KOO21604.1 529 ELDLSEIKAALKKLQERAQNVGASIDQEQAKAAALIGVAQvfqTAAAATAEYE----AAEQKATQMKD 592
                 5567899******************9999988887776541113333333222....23344444443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (716 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1200  (0.0669307); expected 358.6 (0.02)
Passed bias filter:                      444  (0.0247643); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.68u 0.30s 00:00:00.98 Elapsed: 00:00:00.45
# Mc/sec: 4737.63
//
Query:       KOO21605.1  [L=999]
Description: u5 small nuclear ribonucleoprotein component [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    6.2e-50  169.4   0.0    8.6e-50  169.0   0.0    1.2  1  GTP_EFTU     Elongation factor Tu GTP binding domain
    2.5e-33  115.2  11.7    4.2e-33  114.5  11.7    1.4  1  EFTUD2       116 kDa U5 small nuclear ribonucleoprotein compo
    5.4e-23   80.8   0.0    1.2e-22   79.7   0.0    1.7  1  EFG_C        Elongation factor G C-terminus
    3.3e-21   75.3   0.0    5.8e-21   74.5   0.0    1.4  1  EFG_IV       Elongation factor G, domain IV
    2.1e-11   44.0   0.0    4.9e-11   42.9   0.0    1.6  1  GTP_EFTU_D2  Elongation factor Tu domain 2
    1.4e-07   31.6   0.1    2.4e-07   30.8   0.1    1.4  1  MMR_HSR1     50S ribosome-binding GTPase
    2.4e-05   24.3   0.0    6.3e-05   23.0   0.0    1.7  1  EFG_II       Elongation Factor G, domain II
    0.00043   20.5   0.0       0.25   11.6   0.0    2.3  2  Roc          Ras of Complex, Roc, domain of DAPkinase
    0.00091   19.3   0.0       0.54   10.3   0.0    2.3  2  Dynamin_N    Dynamin family
     0.0041   16.6   0.0        1.2    8.6   0.0    2.4  2  SRPRB        Signal recognition particle receptor beta subuni
     0.0087   15.7   0.0      0.086   12.4   0.0    2.1  2  Ras          Ras family
  ------ inclusion threshold ------
      0.021   14.1   0.0      0.035   13.4   0.0    1.2  1  Septin       Septin
       0.16   11.0   2.7       0.25   10.4   2.7    1.1  1  Pes-10       Pes-10


Domain annotation for each model (and alignments):
>> GTP_EFTU  Elongation factor Tu GTP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  169.0   0.0   6.2e-53   8.6e-50       3     183 ..     140     393 ..     138     466 .. 0.79

  Alignments for each domain:
  == domain 1  score: 169.0 bits;  conditional E-value: 6.2e-53
                 EEEEEEEESTTSSHHHHHHHHHHHTTSSCHHHHHHHHHST.............HCHSHHHHHHTSCSSCEEEEEE..T.TCSSEEEEEEEESSSGGGHH CS
    GTP_EFTU   3 irnigiighvDhGKtTLtdrLlyktgaiskkgekaeeerv.............lDtlkeErergiTiksaaisle..k.etkkylinliDtPGHvdFsk 85 
                 +rn++i+gh+ hGKtTL+d+L+++t+  + +++ ++++++             +Dt+++E++rg++ik+  i+l   + ++k+y +nliDtPGHv+Fs+
  KOO21605.1 140 VRNVAIVGHMQHGKTTLVDNLIATTHVPDPSAAAKNGKKAagggaqtsrgrryTDTRADEQKRGLSIKAMPITLLlqSpSEKHYVFNLIDTPGHVNFSD 238
                 79************************999988877443334688888999999*********************9863699****************** PP

                 HHHHHHHT-SEEEEEEETTTBSTHHHHHHHHHHHHTTTEEEEEEESCGSTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT.........TTEEEEEEBT CS
    GTP_EFTU  86 evirglrvlDgavlvvdaveGvepqteevlrlalkegvpiivfiNKmDrlkaelkeiveevkqklsrkeeklekygekge.........kevpvvfgSa 175
                 ev+++lr +Dga+lvvdaveGv + te+++r++ +e+vp+++++NK+Drl+ elk  +++++ kl+++ e+++++   ++         +e +v+f+Sa
  KOO21605.1 239 EVSAALRLADGALLVVDAVEGVSSTTEQLIRHLVTERVPVVLCVNKLDRLILELKLPPQDAYFKLRQVIEEVNSALRAASggahkrlspEEGSVIFASA 337
                 **************************************************99999999999999988877776666555577888888889******** PP

                 TTTBTHH................................................H CS
    GTP_EFTU 176 lkgegvk................................................t 183
                  + ++++                                                t
  KOO21605.1 338 EQDWCFTlesfatiyadfypsipaatlarrlwgdvyyqpvsrtfrrkppdgggprT 393
                 ****9986666666666666555555555555555555555555555555555551 PP

>> EFTUD2  116 kDa U5 small nuclear ribonucleoprotein component N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  114.5  11.7   3.1e-36   4.2e-33       1     122 []       5     121 ..       5     121 .. 0.77

  Alignments for each domain:
  == domain 1  score: 114.5 bits;  conditional E-value: 3.1e-36
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX............XXXXXXXXXXXXXX----TTT---S--TTTTT-SSSEEEE--S-SS CS
      EFTUD2   1 ddlYDEFGNyiGpelesdeeeeseeeeeeeeeeeeeeeeeeeaekaeedeelkdeeeeeeaeeeesnavvlhedkkyypsaeevYGkdvetlvqeeDaq 99 
                 +dlYDEFGNyiGpe +sde+e+ + e ++  ++  +e+ ++e  ++     ++d++e    + e++++v lhedkkyyp+a evYG++vet vqeeD+q
  KOO21605.1   5 EDLYDEFGNYIGPEIDSDEDEDGAPEIDDFGDD--DEDGDDEVVDVGGAGYAMDDDE---VAGEDDTRVTLHEDKKYYPTAMEVYGEEVETTVQEEDTQ 98 
                 69****************995544444444333..3333332344444444444443...3345799******************************** PP

                 -TTS-SS--------B---SS-- CS
      EFTUD2 100 plsePiiaPvkekkfeveekdlp 122
                 p+++Pi+aP+k k++++ ek++p
  KOO21605.1  99 PITQPIVAPMKAKEYDLVEKKIP 121
                 *******************9986 PP

>> EFG_C  Elongation factor G C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   79.7   0.0     9e-26   1.2e-22       1      88 [.     851     939 ..     851     940 .. 0.98

  Alignments for each domain:
  == domain 1  score: 79.7 bits;  conditional E-value: 9e-26
                 EEEEEEEEEEEEEECCCCCCHHHHHHHCT-EEEEEEEE..TTEEEEEEEEEGGG-TTHHHCHHHCTTTS-EEEEEEEEEEE--HHHHHH CS
       EFG_C   1 vllEPivkveievpeeyvgkvisdlssrrGeiedmeqd.asgrviieaeiPlaeligfateLrslTkGegsfsmefsgYeevpgdklde 88 
                 +l+EP++ vei++p ++v ++++ l +rrG++++  ++ ++   +++a +P+ +++gf+t+Lrs T+G++   ++f++Y+ vpgd+ld+
  KOO21605.1 851 RLMEPVYAVEIMAPVDCVPAIYTVLGRRRGHVTSEGPRpGTPLHMLTAFVPVIDSFGFETDLRSHTQGRAFALCTFHHYAIVPGDPLDK 939
                 59************************************99*********************************************9986 PP

>> EFG_IV  Elongation factor G, domain IV
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   74.5   0.0   4.2e-24   5.8e-21       9     120 ..     732     848 ..     728     849 .. 0.95

  Alignments for each domain:
  == domain 1  score: 74.5 bits;  conditional E-value: 4.2e-24
                 .SS-CCHCCCCCCCHTSSSHCCCCCEEEECCTTTTSSEEEEE--S....TCCCHCCCCHHHHCCCCCCTTS-TTTS--EESEEEEEEEEE--T..TTC- CS
      EFG_IV   9 irkpvkereeklkkqsggdgqyakvileiePleegsgnefvdetk....ggqvpkeyieavekGfqealkeGplagepvtdvkvtLldgslhe..vdss 101
                 ir++ k+  e+++ ++ +d  +a+ ++ + P+  ++ n++vd+t     +++++ ++ e++ +Gf +a +eGpl++ep+++vk+++ld+++ +  ++++
  KOO21605.1 732 IRWDRKRLGEFFQTKYSWDLLAARSVWGFAPDA-RGPNVLVDDTLpsevDKKLLGSIREYILQGFGWASREGPLCDEPMRNVKFKVLDATIAAepIQRG 829
                 5599999************************75.**********88888999999******************************************** PP

                 HHHHHHHHCHHHHHHHHCC CS
      EFG_IV 102 eaafkpaarralkeallkA 120
                 +++++p+arr+ ++a+l+A
  KOO21605.1 830 GGQIIPTARRVAYSAFLMA 848
                 ****************998 PP

>> GTP_EFTU_D2  Elongation factor Tu domain 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.9   0.0   3.5e-14   4.9e-11       4      73 ..     518     591 ..     517     592 .. 0.94

  Alignments for each domain:
  == domain 1  score: 42.9 bits;  conditional E-value: 3.5e-14
                  EEEEEEESEEETTEEEEEEC.TCTTSEE...EEEEEEEEEEETEEESEEETTSEEEEEEEESSCCSGSSTTCEE CS
  GTP_EFTU_D2   4 algrvysGtlkkGdevrilg.ndtskke...ivtrissletfhededeavaganaGvivaikgledaiivGdtl 73 
                  a+grv+sGtl++Gdev +lg  ++  +     + +is+l+  +++++ +v +++aG +++i g+e +++++ t+
   KOO21605.1 518 AFGRVFSGTLRVGDEVQVLGeAYSLDDQedsAQKTISRLWIYMARYRVEVTEVPAGCWALIEGVEGSLVKTGTI 591
                  79******************999988889999*********************************988888777 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.8   0.1   1.8e-10   2.4e-07       1     114 []     142     284 ..     142     284 .. 0.75

  Alignments for each domain:
  == domain 1  score: 30.8 bits;  conditional E-value: 1.8e-10
                 EEEEEESTTSSHHHHHHHHHT............S.TEEESSSTTSSSSEEEEEEEETTEE........................EEEEECGGCSSHHHH CS
    MMR_HSR1   1 evaivGrpNvGKStLinaltg............e.kaivsdkpgtTrdinegrvklkgke........................ielvDtpGliegase 62 
                 +vaivG+   GK+tL+  l+             + k  ++  ++t r  ++   + ++ +                        ++l+DtpG ++    
  KOO21605.1 142 NVAIVGHMQHGKTTLVDNLIAtthvpdpsaaakNgKKAAGGGAQTSRGRRYTDTRADE-QkrglsikampitlllqspsekhyvFNLIDTPGHVN---- 235
                 59*****************954555555432211233444444666666666555433.2478888888999999999999999********555.... PP

                 HHHHHHHHHHHHC.TSEEEEEEETTTTCSHHHHHHHHHHHHHTTSEEEEEEES CS
    MMR_HSR1  63 ekglgkaflalee.adlillvvdaseeklkpldeeleelleeakkplilvlnk 114
                    +++++ a  + ad +llvvda  e+++   e+l + l  ++ p++l++nk
  KOO21605.1 236 ---FSDEVSAALRlADGALLVVDAV-EGVSSTTEQLIRHLVTERVPVVLCVNK 284
                 ...777888777779********99.779999999999998899*******98 PP

>> EFG_II  Elongation Factor G, domain II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.0   0.0   4.6e-08   6.3e-05       4      71 ..     611     678 ..     609     682 .. 0.90

  Alignments for each domain:
  == domain 1  score: 23.0 bits;  conditional E-value: 4.6e-08
      EFG_II   4 PvislaiepkskadedklskaLarlleEDptlrverdeeTketilsGmGelHleivverlkrey.kvev 71 
                 +v++la ep   ++  ++ + L++l +  p l++++ ee++e ++ G Gel l+ v+  l++ y ++ev
  KOO21605.1 611 SVMKLATEPLHPSELPRMLEGLRKLNKAYPLLSTKV-EESGEHVIIGTGELYLDCVMHDLRHVYaEIEV 678
                 699*****************************9988.79*********************998733555 PP

>> Roc  Ras of Complex, Roc, domain of DAPkinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.7   0.0    0.0057       7.9       2      26 ..     143     167 ..     142     179 .. 0.84
   2 !   11.6   0.0   0.00018      0.25      26     119 ..     198     286 ..     176     287 .. 0.71

  Alignments for each domain:
  == domain 1  score: 6.7 bits;  conditional E-value: 0.0057
                 EEEESSTTSSHHHHHHCHCT-CCC- CS
         Roc   2 vvlvGdsgvGKtsllkrfvedkfse 26 
                 v +vG  + GKt+l+++++  +  +
  KOO21605.1 143 VAIVGHMQHGKTTLVDNLIATTHVP 167
                 789**************99877655 PP

  == domain 2  score: 11.6 bits;  conditional E-value: 0.00018
                 -EEETTTTEEEEEEECGGSGGCTTBTTTTCEEEEEEEE-SGGCTTTT-HHHHCTSCEEEEEEE..GHHHHCHHHHHHHHHHHCSSS-EEEEEE-TT CS
         Roc  26 ekekstigvdfltkevtkikgvendkkvkkvklniWDtaGqerfrslhplylreaalailvyd..srssenlkeWlkelkkvagkspvilvgnkiD 119
                 +++k  ++++ +  ++     + ++ + k++ +n+ Dt G+ +f+   +  lr a+ a+lv+d  +  s++ ++ +++l   +++ pv+l++nk+D
  KOO21605.1 198 DEQKRGLSIKAMPITL-----LLQSPSEKHYVFNLIDTPGHVNFSDEVSAALRLADGALLVVDavEGVSSTTEQLIRHLV--TERVPVVLCVNKLD 286
                 3333434444433332.....22334457899*******************************54445677788887764..5678*********9 PP

>> Dynamin_N  Dynamin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.9   0.0    0.0042       5.8       1      21 [.     143     163 ..     143     171 .. 0.88
   2 !   10.3   0.0   0.00039      0.54      73     165 ..     194     283 ..     164     286 .. 0.77

  Alignments for each domain:
  == domain 1  score: 6.9 bits;  conditional E-value: 0.0042
                 EEEEEBTTTTHHHHHHHHHTS CS
   Dynamin_N   1 iavvGsqSsGKSSvlnaLlge 21 
                 +a+vG++ +GK++++++L+  
  KOO21605.1 143 VAIVGHMQHGKTTLVDNLIAT 163
                 79***************9865 PP

  == domain 2  score: 10.3 bits;  conditional E-value: 0.00039
                 HHHHHHHHTSSSS--SS-EEEEEEETTS-SEE..EEE---B-SSSGTTSHHHHHHHSTTEEEEEEEETTS-CCC-CHHHHHHHHSTTBTTEEEEE CS
   Dynamin_N  73 eketekiagankgiskkvillkilsllvkglt..lvDlPGldsvnkrdqelvkeyikkadiilavtsanhdlsnsealflarevdpkgkrtivvl 165
                 + + ++ + ++ +i+  +i+l  +s+ +k+++  l+D+PG  +      + v  +++ ad  l+v++a   +s++  + ++++v ++   +++v+
  KOO21605.1 194 DTRADEQK-RGLSIKAMPITLLLQSPSEKHYVfnLIDTPGHVNFS----DEVSAALRLADGALLVVDAVEGVSSTTEQLIRHLVTERVPVVLCVN 283
                 44444443.55566666999999999988874339*****76643....4679999*****************9998888888888888888887 PP

>> SRPRB  Signal recognition particle receptor beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.4   0.0    0.0082        11       4      27 ..     141     164 ..     139     182 .. 0.83
   2 !    8.6   0.0   0.00086       1.2      42      84 ..     216     255 ..     193     291 .. 0.74

  Alignments for each domain:
  == domain 1  score: 5.4 bits;  conditional E-value: 0.0082
                 -EEEEE-STTSSHHHHHHHHHHSS CS
       SRPRB   4 pavllvGlsdsGKTslftrLttds 27 
                 ++v +vG ++ GKT+l   L   +
  KOO21605.1 141 RNVAIVGHMQHGKTTLVDNLIATT 164
                 6789*************9998765 PP

  == domain 2  score: 8.6 bits;  conditional E-value: 0.00086
                 TG...GGTT-SEEEETT-GCCSHHHHHHHHHHGGEEEEEEEEE CS
       SRPRB  42 kvksekgskltliDfPGheklrqklleklkaksslkglvfvvD 84 
                 +  sek+  ++liD PGh+++  +++  l+    + g + vvD
  KOO21605.1 216 QSPSEKHYVFNLIDTPGHVNFSDEVSAALR---LADGALLVVD 255
                 446789999*************99998844...4445555665 PP

>> Ras  Ras family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.6   0.0      0.28   3.9e+02       2      22 ..     143     163 ..     142     172 .. 0.84
   2 !   12.4   0.0   6.2e-05     0.086      45     115 ..     220     286 ..     190     322 .. 0.83

  Alignments for each domain:
  == domain 1  score: 0.6 bits;  conditional E-value: 0.28
                 EEEEESTTSSHHHHHHHHHHS CS
         Ras   2 lvlvGdsavGKtslllrfvkd 22 
                 + +vG  + GKt+l+ + +  
  KOO21605.1 143 VAIVGHMQHGKTTLVDNLIAT 163
                 679***********9877765 PP

  == domain 2  score: 12.4 bits;  conditional E-value: 6.2e-05
                 TEEEEEEEEEETTSGGGHHHHHHHHTTESEEEEEEETTBHHHHHTHHHHHHHHHHHST.TTSEEEEEEETTT CS
         Ras  45 gkevkleiwDTAGqeefkslrelyyrdaegillvyditsresfenvkkwveeikrvae.envpivLvGnKvD 115
                 +k++ +++ DT G  +f+   ++ +r a+g+llv d  +      v++ +e++ r+   e+vp+vL+ nK D
  KOO21605.1 220 EKHYVFNLIDTPGHVNFSDEVSAALRLADGALLVVDAVE-----GVSSTTEQLIRHLVtERVPVVLCVNKLD 286
                 78999*****************************98665.....555556666555544889********99 PP

>> Septin  Septin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.0   2.5e-05     0.035       6      78 ..     142     239 ..     139     248 .. 0.83

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 2.5e-05
                 EEEEEEBTTSSCCCCCCTTSSSS----......................--------------S-EEEEEEE.EET..TCEEEEEEEE---BSSSSSH CS
      Septin   6 tlmvvGesglGkttlintlfetdliee......................ekleeasekkkktveikkkkvvi.eed..gvklnltviDtpgfGdavdn 78 
                 ++ +vG+   Gkttl++ l++t+ +++                      + ++++++++k+ ++ik+   ++  +   + +  +++iDtpg+ ++ d 
  KOO21605.1 142 NVAIVGHMQHGKTTLVDNLIATTHVPDpsaaakngkkaagggaqtsrgrRYTDTRADEQKRGLSIKAMPITLlLQSpsEKHYVFNLIDTPGHVNFSDE 239
                 7889*********************999******************99766777888999999999665443122223788999*******9887775 PP

>> Pes-10  Pes-10
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   2.7   0.00018      0.25     176     260 ..      20     106 ..       4     132 .. 0.79

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00018
      Pes-10 176 eeeedeedseedd.ddiededeedesssstdsgiesedeElveereeeee.eeaerleaaigeilmvvLaqslksgneevissaief 260
                 + +ede+ ++e d +  +ded +de+++    g+  +d+E++ e++++ + +e +++   ++e+      + +++++++ i++ i +
  KOO21605.1  20 DSDEDEDGAPEIDdFGDDDEDGDDEVVDVGGAGYAMDDDEVAGEDDTRVTlHEDKKYYPTAMEVYGEEVETTVQEEDTQPITQPIVA 106
                 34444433444333555788999*******************99998876256678899********************99988755 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (999 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       480  (0.0267723); expected 358.6 (0.02)
Passed bias filter:                      462  (0.0257683); expected 358.6 (0.02)
Passed Vit filter:                        49  (0.002733); expected 17.9 (0.001)
Passed Fwd filter:                        13  (0.000725082); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 0.77u 0.28s 00:00:01.05 Elapsed: 00:00:00.45
# Mc/sec: 6736.47
//
Query:       KOO21606.1  [L=257]
Description: hypothetical protein Ctob_001272 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (257 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       380  (0.0211947); expected 358.6 (0.02)
Passed bias filter:                      318  (0.0177366); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.42u 0.24s 00:00:00.65 Elapsed: 00:00:00.40
# Mc/sec: 1921.23
//
Query:       KOO21607.1  [L=370]
Description: conserved unknown protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.4e-26   91.1   6.8    1.7e-09   37.6   0.9    4.1  4  TIG         IPT/TIG domain
    5.5e-07   29.5   0.0       0.53   10.3   0.0    3.6  4  TIG_plexin  TIG domain


Domain annotation for each model (and alignments):
>> TIG  IPT/TIG domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.1   0.0     0.047   4.2e+02      26      47 ..      39      66 ..      24     126 .. 0.75
   2 !   26.0   0.1   7.8e-10     7e-06       1      84 [.     130     213 ..     130     214 .. 0.87
   3 !   37.6   0.9   1.9e-13   1.7e-09       2      85 .]     219     307 ..     218     307 .. 0.85
   4 !   27.0   0.0   3.8e-10   3.4e-06       2      59 ..     311     368 ..     310     370 .] 0.92

  Alignments for each domain:
  == domain 1  score: 1.1 bits;  conditional E-value: 0.047
         TIG 26 F..gtnssdssvtiggtpctvta....s 47
                F    ns+ +sv +gg +++v+a    +
  KOO21607.1 39 FgeRVNSDGLSVEVGGVAAVVNAtlvgW 66
                4666789999999999999887655442 PP

  == domain 2  score: 26.0 bits;  conditional E-value: 7.8e-10
         TIG   1 PvissisPnsgsasgGttititGtnFgtnssdssvtiggtpctvtasvssttlvcttPpgp.sgllnvsvlvdgaqlrsdnttft 84 
                 P++s +  ++g++sgGt++ i G+ F    s ++++++ + +++t+s+ +++l+c++P +  +g++ v v  +g+q + ++ t+ 
  KOO21607.1 130 PTVSYLRFERGPTSGGTSVAIGGSSF-RGGSLYRCRFDVAVVNATYSSEHDELRCLSPMRGaAGDSVVEVSLNGQQFTRSGMTYV 213
                 5666666789****************.*******************************999566*********966666666665 PP

  == domain 3  score: 37.6 bits;  conditional E-value: 1.9e-13
         TIG   2 vissisPnsgsasgGttititGtnFgtnssdssvtiggtpctvta..svssttlvcttPpgp......sgllnvsvlvdgaqlrsdnttftY 85 
                 v+s + P+ g+ +gGt +t+ G +F +  +d+++++ g+p  v++  + s+ t+vcttPp        ++ ++vs+     + +s+++ ft+
  KOO21607.1 219 VVSHVVPSAGPRAGGTALTVIGVGF-AAGRDYRCRFEGSPEAVVYatFESDGTVVCTTPPSRcgagscTEVVEVSLNS--ESFSSSGVLFTF 307
                 688999*******************.*****************99*****************9955444444444444..448888888875 PP

  == domain 4  score: 27.0 bits;  conditional E-value: 3.8e-10
         TIG   2 vissisPnsgsasgGttititGtnF.gtnssdssvtiggtpctvtasvssttlvcttPp 59 
                 +i+s+  +sg++sgGt +t++Gt+F +  + +  + + +  ++++ ++++t ++c++P 
  KOO21607.1 311 TIRSLDVSSGPSSGGTMVTVHGTGFtDMARVEALCAFSEGVAVAS-YIDETRVRCVSPR 368
                 899**********************87788888899999999999.**********996 PP

>> TIG_plexin  TIG domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.0      0.96   8.6e+03      66      89 .]     104     127 ..      96     127 .. 0.68
   2 !    6.9   0.0   0.00069       6.2      25      52 ..     159     187 ..     153     192 .. 0.80
   3 !   10.3   0.0   5.9e-05      0.53      24      53 ..     246     278 ..     230     308 .. 0.72
   4 !    8.0   0.0   0.00031       2.8      11      52 ..     326     368 ..     318     370 .] 0.81

  Alignments for each domain:
  == domain 1  score: -3.2 bits;  conditional E-value: 0.96
  TIG_plexin  66 vtvkLsirsketgkdlastnFtFY 89 
                  +v L +r + ++ +   ++F+FY
  KOO21607.1 104 RVVALGLRMNGQQISEDAASFSFY 127
                 566777777766666567788888 PP

  == domain 2  score: 6.9 bits;  conditional E-value: 0.00069
  TIG_plexin  25 eklkCvFgdleeseatvs.dnkvtCdtPk 52 
                 + ++C+F+ + +++  +s +++++C +P+
  KOO21607.1 159 SLYRCRFDVAVVNATYSSeHDELRCLSPM 187
                 4689***998666655446*********7 PP

  == domain 3  score: 10.3 bits;  conditional E-value: 5.9e-05
  TIG_plexin  24 seklkCvFgdlee..seatvs.dnkvtCdtPkp 53 
                 + +++C+F+ + e    at++ d++v C+tP++
  KOO21607.1 246 GRDYRCRFEGSPEavVYATFEsDGTVVCTTPPS 278
                 568*****98877334466667*********98 PP

  == domain 4  score: 8.0 bits;  conditional E-value: 0.00031
  TIG_plexin  11 seltltvenlpal.seklkCvFgdleeseatvsdnkvtCdtPk 52 
                 +++t+  + + ++   +  C F +    ++ +++++v+C +P 
  KOO21607.1 326 TMVTVHGTGFTDMaRVEALCAFSEGVAVASYIDETRVRCVSPR 368
                 5677777777778445889******9999*************7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (370 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       286  (0.0159518); expected 358.6 (0.02)
Passed bias filter:                      229  (0.0127726); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.44u 0.24s 00:00:00.68 Elapsed: 00:00:00.40
# Mc/sec: 2772.51
//
Query:       KOO21608.1  [L=661]
Description: calmodulin-binding protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    7.1e-37  127.2   1.9    1.3e-36  126.3   1.9    1.4  1  DENN           DENN (AEX-3) domain
     0.0026   17.6   0.0     0.0094   15.8   0.0    1.9  2  Lipase_3       Lipase (class 3)
  ------ inclusion threshold ------
       0.15   12.1   0.1       0.55   10.3   0.1    2.1  1  dDENN          dDENN domain


Domain annotation for each model (and alignments):
>> DENN  DENN (AEX-3) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  126.3   1.9   2.2e-40   1.3e-36      44     186 .]      15     160 ..       3     160 .. 0.93

  Alignments for each domain:
  == domain 1  score: 126.3 bits;  conditional E-value: 2.2e-40
        DENN  44 nlllevplPapgktlklvslaveekillqrpedselPl..edvdlkelfrcLsienilqlfeavLlErriillSeklarLtsvaealvallyPlkWqhi 140
                 + ll+ ++P+ g  +++    ++ ++++ +p  ++lP    + d+ +lf++L+ +n++ l +++L+E++++l  +++++Lt +ae+l all+P++Wqh+
  KOO21608.1  15 EALLHTQIPPFGCRVEV--PLGNVSVSVVTPAANQLPHtrAGRDFLQLFQALDANNVIMLWALLLTEQKVVLQCTQPHVLTMAAETLSALLFPFSWQHV 111
                 4477789******9999..99****************988999******************************************************** PP

        DENN 141 yiPvlpaslldvleaPtPfiiGvesslle...leekpledvvlvDldkn 186
                 yiP+lp++l+d+l+aP+Pf++G+++++l+    ++  ++dvv vDld+n
  KOO21608.1 112 YIPILPMRLIDILQAPVPFLVGIDKEILDlaeSQRMIPDDVVQVDLDTN 160
                 *****************************866677779*********96 PP

>> Lipase_3  Lipase (class 3)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.0   1.6e-06    0.0094      18     106 ..     452     550 ..     434     557 .. 0.67
   2 ?   -2.5   0.0      0.71   4.3e+03      30      56 ..     622     649 ..     603     656 .. 0.68

  Alignments for each domain:
  == domain 1  score: 15.8 bits;  conditional E-value: 1.6e-06
                 ---EEE-HHHH-GTT-EEEHHHHHHHHS-HHHHHHHHHHHHHHHTT.-EEEEEEEETHHHHHHHHHHHHHHHTT-SS.............---EEEEEE CS
    Lipase_3  18 dfslteakellekeggkvhsgfleayeeslreqvlkelkrllekyp.eysivvtGHSLGgalAlLaaldlvengene.............kkkvtvvtf 102
                  ++  +++++       ++++  +ay+e lr++++++l+rl +    ++ + v+GH +G+ lA+ +  +l+++                 +  + + t+
  KOO21608.1 452 GVENLPVRQT----MLDMMTYSDDAYREELRDSLRQSLRRLAHDGGsSMPLCVVGHGFGAVLAIDFFEELQREAADAashakelsplergETLAALCTM 546
                 3333333333....5566666667777*************99999956***************977666665554444555555666666666666666 PP

                 S--- CS
    Lipase_3 103 GqPr 106
                 G+Pr
  KOO21608.1 547 GCPR 550
                 6665 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 0.71
                 G...TT-EEEHHHHHHHHS-HHHHHHHHHH CS
    Lipase_3  30 k...eggkvhsgfleayeeslreqvlkelk 56 
                 +    +g +h+ +l+++e  +++++ ++++
  KOO21608.1 622 RrgkRDGAIHHEYLKLLE--VQTAIAQSMS 649
                 134469999999999999..6666666664 PP

>> dDENN  dDENN domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.1   9.3e-05      0.55      14      38 ..     288     313 ..     275     329 .. 0.74

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 9.3e-05
       dDENN  14 hrpFlsrfletQmFarFIderlel.s 38 
                   + ls f  +Q F++F++ rl + +
  KOO21608.1 288 CSDWLSIFAASQSFTQFLEARLAPrD 313
                 5678999***************9632 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (661 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       518  (0.0288917); expected 358.6 (0.02)
Passed bias filter:                      436  (0.0243181); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.62u 0.28s 00:00:00.90 Elapsed: 00:00:00.45
# Mc/sec: 4414.99
//
Query:       KOO21609.1  [L=451]
Description: v-type proton ATPase subunit h-like protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    4.3e-57  193.8   0.0      2e-55  188.3   0.0    2.0  2  V-ATPase_H_N  V-ATPase subunit H
    6.6e-42  142.3   0.0      2e-39  134.3   0.0    2.5  2  V-ATPase_H_C  V-ATPase subunit H
    6.5e-13   48.2   6.1      0.014   15.4   0.0    5.7  6  Arm           Armadillo/beta-catenin-like repeat
    0.00035   19.0   1.6        0.3    9.3   0.0    2.3  2  DRIM          Down-regulated in metastasis
    0.00058   20.2   0.5        1.3    9.4   0.0    3.2  3  HEAT_2        HEAT repeats
  ------ inclusion threshold ------
       0.05   14.1   0.6         14    6.3   0.0    3.9  4  HEAT_EZ       HEAT-like repeat
      0.084   13.2   0.0         55    4.4   0.0    4.0  4  HEAT          HEAT repeat


Domain annotation for each model (and alignments):
>> V-ATPase_H_N  V-ATPase subunit H
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  188.3   0.0   7.8e-59     2e-55       7     315 .]       8     325 ..       2     325 .. 0.90
   2 ?    3.6   0.0     0.013        34     104     178 ..     369     443 ..     352     446 .. 0.76

  Alignments for each domain:
  == domain 1  score: 188.3 bits;  conditional E-value: 7.8e-59
  V-ATPase_H_N   7 ankirarkipWegyvrsqliseedlkliksldkakkeqraklldedgpqyvklllnLlsklskedtlqyiLvlidDllsedksrvelflslakkeeq 103
                    +++   ++pW +++ +++is e+l+li sldk+++  +++l+  +  + + l+ ++l+ ++k+d++ y Lv++d + + d s++ +f +l  ++++
    KOO21609.1   8 NEDVLRSEVPWPSFASAGMISREQLELIYSLDKQPVRTQVALFHDKPLALAALFNDILTCINKDDVVLYTLVMLDVITDADASIALYFPKLIIETKG 104
                   6778889***************************************************************************999999887666665 PP

  V-ATPase_H_N 104 d..pwkpflkllnrqddfivllalrllakllvqgk.kksnklv........esaLnrllqlLss...qlssstnevieiavrllqellrtkeyRelf 186
                      p+kp+lkll+++  fiv++a+++l kl+ + +    +++         +s+ ++++++L++   +++s+++  ++  +  lq+l+ t + R+++
    KOO21609.1 105 VadPMKPLLKLLSQSPPFIVQKAATVLGKLAGAPApPGAPEPLvatlnlhlSSFAEWVVSVLKEvspSEASESA-KTNASMSGLQALVATMRGRKAA 200
                   566***************************97654055566557888888777778888888886543333333.3488999*************** PP

  V-ATPase_H_N 187 veadgvstlisilrstvanstrvgiQlqYqvllclWlLsFekkiaeelvkkk.elipllvdilrdsvKEKvtRvilatlrNllekaeksskelaavm 282
                   + a+ +++l  + + ++ +s+++ +Ql+Yq+l+ lW Ls+++++a e+ ++k +li +lv+i + s+KEKv+Rv+l+tlrNll  a+       + m
    KOO21609.1 201 LAAEVLPPLSMLVTTSTLSSSSTTVQLLYQTLFSLWSLSYSAEAALEMASSKvGLIAKLVEITKASPKEKVIRVALSTLRNLLGVAN-----ASNDM 292
                   ***********99999999********************************************************************.....56*** PP

  V-ATPase_H_N 283 vqvkllkllenLeerkfsDeditedleyLkeeL 315
                   v+ +l+++le +  rkf Dedi e+++yL++ L
    KOO21609.1 293 VFFGLMPVLEAMHARKFADEDIPEEVDYLSQVL 325
                   *****************************9987 PP

  == domain 2  score: 3.6 bits;  conditional E-value: 0.013
  V-ATPase_H_N 104 d...pwkpflkllnrqddfivllalrllakllvqgkkksnklv.esaLnrllqlLssqlssstnevieiavrllqellr 178
                   +   p+k +++ll ++d ++  +a+  +  l+ ++++    ++   a +  +q+L++    ++n v++ a++++q l+ 
    KOO21609.1 369 NgnaPIKKLVELLRSEDPQVLAIACSDISELIKFHPEGRRLVTqAGAKPIAMQVLKH----PDNTVQKYALTCVQRLMV 443
                   134599999999999999999999999999999999888885533444677777665....788899999999999875 PP

>> V-ATPase_H_C  V-ATPase subunit H
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.5   0.0    0.0069        18      33      81 ..     245     293 ..     237     314 .. 0.86
   2 !  134.3   0.0   7.8e-43     2e-39       2     117 .]     332     446 ..     331     446 .. 0.99

  Alignments for each domain:
  == domain 1  score: 5.5 bits;  conditional E-value: 0.0069
  V-ATPase_H_C  33 aekleeknfkllkkLiklleeskdktvlavalnDigelvkllpegkkvl 81 
                   a ++ ++++ l+ kL+++ ++s +++v+ val+ + +l+ +++ +++++
    KOO21609.1 245 ALEMASSKVGLIAKLVEITKASPKEKVIRVALSTLRNLLGVANASNDMV 293
                   5567788899*********999999**********99998888777765 PP

  == domain 2  score: 134.3 bits;  conditional E-value: 7.8e-43
  V-ATPase_H_C   2 ltsfdeYlaElesgkLewspvHksekFWkenaekleeknfkllkkLiklleeskdktvlavalnDigelvkllpegkkvleklkaKekimellehed 98 
                   lts+d Y+aEle+gkLewsp Hkse+FWk+n++++ee+  + +kkL++ll +s+d++vla+a++Di+el+k++peg++++++ +aK   m++l+h+d
    KOO21609.1 332 LTSWDVYKAELETGKLEWSPSHKSENFWKDNYKRFEENGNAPIKKLVELL-RSEDPQVLAIACSDISELIKFHPEGRRLVTQAGAKPIAMQVLKHPD 427
                   79************************************************.69******************************************** PP

  V-ATPase_H_C  99 eevkyeALkavqkllvqnw 117
                   ++v++ AL++vq+l+v nw
    KOO21609.1 428 NTVQKYALTCVQRLMVINW 446
                   ****************999 PP

>> Arm  Armadillo/beta-catenin-like repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.4   0.0    0.0038       9.7      14      33 ..     109     129 ..     105     134 .. 0.91
   2 ?   -2.7   0.0       2.8   7.1e+03      12      23 ..     142     154 ..     141     157 .. 0.78
   3 ?    0.7   0.0      0.23   5.9e+02       6      25 ..     198     222 ..     194     227 .. 0.70
   4 !   15.4   0.0   5.4e-06     0.014      11      39 ..     253     282 ..     249     284 .. 0.93
   5 !    8.6   0.1   0.00079         2      14      33 ..     374     393 ..     374     399 .. 0.91
   6 !   14.9   0.0   7.8e-06      0.02       2      39 ..     404     441 ..     403     443 .. 0.93

  Alignments for each domain:
  == domain 1  score: 6.4 bits;  conditional E-value: 0.0038
                 HHHHHHHTT.TSSHHHHHHHH CS
         Arm  14 vppLvrLLs.sedeevqeeAa 33 
                 ++pL++LLs s+   vq++A+
  KOO21609.1 109 MKPLLKLLSqSPPFIVQKAAT 129
                 68***************9998 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 2.8
                 THHHHHHHHTT.T CS
         Arm  12 GavppLvrLLs.s 23 
                 Ga +pLv+ L+ +
  KOO21609.1 142 GAPEPLVATLNlH 154
                 8899***998765 PP

  == domain 3  score: 0.7 bits;  conditional E-value: 0.23
                 HHHHHTTHHHHHHHHTT.....TSS CS
         Arm   6 davieaGavppLvrLLs.....sed 25 
                 +a   a ++ppL  L +     s +
  KOO21609.1 198 KAALAAEVLPPLSMLVTtstlsSSS 222
                 55666889****9999976664444 PP

  == domain 4  score: 15.4 bits;  conditional E-value: 5.4e-06
                 TTHHHHHHHHTT.TSSHHHHHHHHHHHHHH CS
         Arm  11 aGavppLvrLLs.sedeevqeeAawALsNL 39 
                  G +  Lv+  + s++e+v ++A+++L+NL
  KOO21609.1 253 VGLIAKLVEITKaSPKEKVIRVALSTLRNL 282
                 689999***********************9 PP

  == domain 5  score: 8.6 bits;  conditional E-value: 0.00079
                 HHHHHHHTTTSSHHHHHHHH CS
         Arm  14 vppLvrLLssedeevqeeAa 33 
                 ++ Lv+LL+sed++v+  A+
  KOO21609.1 374 IKKLVELLRSEDPQVLAIAC 393
                 689*************9998 PP

  == domain 6  score: 14.9 bits;  conditional E-value: 7.8e-06
                 HHHHHHHHHTTHHHHHHHHTTTSSHHHHHHHHHHHHHH CS
         Arm   2 senkdavieaGavppLvrLLssedeevqeeAawALsNL 39 
                 +e +++v +aGa p+ ++ L+++d +vq+ A+++++ L
  KOO21609.1 404 PEGRRLVTQAGAKPIAMQVLKHPDNTVQKYALTCVQRL 441
                 8999*****************************99866 PP

>> DRIM  Down-regulated in metastasis
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.3   0.8   0.00025      0.63     293     365 ..     218     291 ..     157     332 .. 0.71
   2 !    9.3   0.0   0.00012       0.3      21      52 ..     407     438 ..     398     441 .. 0.83

  Alignments for each domain:
  == domain 1  score: 8.3 bits;  conditional E-value: 0.00025
        DRIM 293 LpsenlqspsaLlkLfltWsssprlaplLak..ydssvlpavielLsapkakesVvefvldivenllkladeeee 365
                 L+s+++       +Lf++Ws s +  ++L    +   ++ +++e+ +a + ke+V++++l  ++nll  a+++++
  KOO21609.1 218 LSSSSTTVQLLYQTLFSLWSLSYSAEAALEMasSKVGLIAKLVEITKA-SPKEKVIRVALSTLRNLLGVANASND 291
                 333333333334468999999998888888633444556666665443.46899**************9887654 PP

  == domain 2  score: 9.3 bits;  conditional E-value: 0.00012
        DRIM  21 kalykseelyeallelLsngdeeiQklALkcl 52 
                 ++l  ++  + + +++L+++d+++Qk AL+c+
  KOO21609.1 407 RRLVTQAGAKPIAMQVLKHPDNTVQKYALTCV 438
                 66667777778899*****************8 PP

>> HEAT_2  HEAT repeats
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.1   0.0    0.0029       7.3      29      60 ..     105     136 ..      87     157 .. 0.79
   2 ?   -1.4   0.0       1.3   3.3e+03       2      26 ..     257     281 ..     256     291 .. 0.79
   3 !    9.4   0.0   0.00051       1.3       2      53 ..     375     436 ..     374     442 .. 0.82

  Alignments for each domain:
  == domain 1  score: 7.1 bits;  conditional E-value: 0.0029
      HEAT_2  29 npealpaLvellededpavRraaaeaLgaigd 60 
                   + ++ L++ll+ + p + + aa+ Lg+++ 
  KOO21609.1 105 VADPMKPLLKLLSQSPPFIVQKAATVLGKLAG 136
                 55778999*****999************9952 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 1.3
      HEAT_2   2 daLlqalendpdpevrraairaLgr 26 
                 ++L+++ + +p ++v r a+ +L +
  KOO21609.1 257 AKLVEITKASPKEKVIRVALSTLRN 281
                 6788888889999999999988874 PP

  == domain 3  score: 9.4 bits;  conditional E-value: 0.00051
      HEAT_2   2 daLlqalendpdpevrraairaLg...rignp........ealpaLvellededpavRraaae 53 
                 ++L+++l +++dp+v + a+  +    +++++         a p+  ++l+++d  v++ a +
  KOO21609.1 375 KKLVELL-RSEDPQVLAIACSDISeliKFHPEgrrlvtqaGAKPIAMQVLKHPDNTVQKYALT 436
                 7899999.9***************877555557777776778999999999999999988776 PP

>> HEAT_EZ  HEAT-like repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.9   0.0     0.064   1.7e+02      30      54 ..     109     133 ..     106     134 .. 0.78
   2 ?   -2.7   0.0       3.8   9.6e+03      27      34 ..     203     210 ..     186     228 .. 0.56
   3 ?    6.3   0.0    0.0054        14      30      54 ..     374     398 ..     374     399 .. 0.87
   4 ?   -0.9   0.0         1   2.6e+03      36      54 ..     422     440 ..     420     441 .. 0.82

  Alignments for each domain:
  == domain 1  score: 2.9 bits;  conditional E-value: 0.064
     HEAT_EZ  30 lpaLlalLnddsdeVRaaAagaLgn 54 
                 +++Ll+lL+ +++ + ++Aa  Lg+
  KOO21609.1 109 MKPLLKLLSQSPPFIVQKAATVLGK 133
                 789**********666666666665 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 3.8
     HEAT_EZ  27 peilpaLl 34 
                  e+lp+L 
  KOO21609.1 203 AEVLPPLS 210
                 34555554 PP

  == domain 3  score: 6.3 bits;  conditional E-value: 0.0054
     HEAT_EZ  30 lpaLlalLnddsdeVRaaAagaLgn 54 
                 ++ L+ lL+++++ V a A+  ++ 
  KOO21609.1 374 IKKLVELLRSEDPQVLAIACSDISE 398
                 6789****************77765 PP

  == domain 4  score: -0.9 bits;  conditional E-value: 1
     HEAT_EZ  36 lLnddsdeVRaaAagaLgn 54 
                  L++++ +V+++A+ +  +
  KOO21609.1 422 VLKHPDNTVQKYALTCVQR 440
                 5899999****99988666 PP

>> HEAT  HEAT repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.3   0.0      0.46   1.2e+03       4      28 ..     111     135 ..     109     136 .. 0.74
   2 ?   -3.5   0.0         7   1.8e+04      14      27 ..     269     282 ..     266     284 .. 0.70
   3 ?    2.7   0.0     0.075   1.9e+02       5      22 ..     377     394 ..     374     403 .. 0.83
   4 ?    4.4   0.0     0.022        55       6      28 ..     420     442 ..     417     443 .. 0.86

  Alignments for each domain:
  == domain 1  score: 0.3 bits;  conditional E-value: 0.46
                 HHHHHHT-SSHHHHHHHHHHHHHHH CS
        HEAT   4 lllkllsDpspeVReaAakaLgala 28 
                 +llklls + p++ + Aa  Lg+la
  KOO21609.1 111 PLLKLLSQSPPFIVQKAATVLGKLA 135
                 6788775555568999999999987 PP

  == domain 2  score: -3.5 bits;  conditional E-value: 7
                 HHHHHHHHHHHHHH CS
        HEAT  14 peVReaAakaLgal 27 
                  +V + A+ +L +l
  KOO21609.1 269 EKVIRVALSTLRNL 282
                 56667788888776 PP

  == domain 3  score: 2.7 bits;  conditional E-value: 0.075
                 HHHHHT-SSHHHHHHHHH CS
        HEAT   5 llkllsDpspeVReaAak 22 
                 l++ll++++p+V + A+ 
  KOO21609.1 377 LVELLRSEDPQVLAIACS 394
                 899*********998885 PP

  == domain 4  score: 4.4 bits;  conditional E-value: 0.022
                 HHHHT-SSHHHHHHHHHHHHHHH CS
        HEAT   6 lkllsDpspeVReaAakaLgala 28 
                 ++ l++p+  V + A+ ++ +l+
  KOO21609.1 420 MQVLKHPDNTVQKYALTCVQRLM 442
                 6779**************99885 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (451 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       482  (0.0268838); expected 358.6 (0.02)
Passed bias filter:                      376  (0.0209716); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.51u 0.26s 00:00:00.77 Elapsed: 00:00:00.41
# Mc/sec: 3281.87
//
Query:       KOO21610.1  [L=189]
Description: zim17 protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    7.4e-27   93.1   0.3    1.1e-26   92.5   0.3    1.3  1  zf-DNL    DNL zinc finger
     0.0047   17.0   0.3     0.0077   16.3   0.3    1.3  1  Elf1      Transcription elongation factor Elf1 like
  ------ inclusion threshold ------
      0.067   13.7   0.2        1.7    9.2   0.0    2.4  2  RuvA_C    RuvA, C-terminal domain


Domain annotation for each model (and alignments):
>> zf-DNL  DNL zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   92.5   0.3   1.8e-30   1.1e-26       1      62 [.      61     122 ..      61     124 .. 0.97

  Alignments for each domain:
  == domain 1  score: 92.5 bits;  conditional E-value: 1.8e-30
      zf-DNL   1 kltftCkaCetrsskeiskkaYekGvVivqCpgCknrHliaDnLgwfedkkktiedilkekg 62 
                 +l ftC++Cet ++++is++aY+kG+Viv+CpgC+++HliaD+L+w+ed+ kt+e++++++g
  KOO21610.1  61 QLRFTCNVCETPNAHSISRHAYTKGTVIVNCPGCNSTHLIADHLNWIEDDFKTLEQYMAKRG 122
                 589********************************************************998 PP

>> Elf1  Transcription elongation factor Elf1 like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.3   1.3e-06    0.0077       8      54 ..      51      97 ..      44     112 .. 0.80

  Alignments for each domain:
  == domain 1  score: 16.3 bits;  conditional E-value: 1.3e-06
        Elf1  8 kkrkkkkkkklptkFdCpfCnheksvevkldkkek.iaevsCkvCges 54
                + ++k k+++++ +F+C +C+  ++ +++ +  +k + +v+C  C+++
  KOO21610.1 51 Q-KPKAKQDRFQLRFTCNVCETPNAHSISRHAYTKgTVIVNCPGCNST 97
                3.34455566***************9998766544499*******986 PP

>> RuvA_C  RuvA, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.2   0.0   0.00029       1.7      10      21 ..      24      35 ..      20      37 .. 0.91
   2 ?    2.2   0.1     0.041   2.5e+02      34      45 ..     169     180 ..     151     182 .. 0.67

  Alignments for each domain:
  == domain 1  score: 9.2 bits;  conditional E-value: 0.00029
                HHHCTS-HHHHH CS
      RuvA_C 10 LlaLGYkekeae 21
                L++LGY+e+e++
  KOO21610.1 24 LITLGYSEAEID 35
                99********97 PP

  == domain 2  score: 2.2 bits;  conditional E-value: 0.041
                 -HHHHHHHHHCC CS
      RuvA_C  34 sveelIraALkl 45 
                 + ++ Ir+AL++
  KOO21610.1 169 DQAARIREALQA 180
                 44568*****96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (189 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       732  (0.0408277); expected 358.6 (0.02)
Passed bias filter:                      586  (0.0326845); expected 358.6 (0.02)
Passed Vit filter:                        63  (0.00351386); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.39u 0.23s 00:00:00.62 Elapsed: 00:00:00.37
# Mc/sec: 1549.70
//
Query:       KOO21611.1  [L=902]
Description: calpain-type cysteine protease [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    3.1e-16   59.9   0.0    9.7e-06   25.9   0.0    4.2  4  Calpain_III   Calpain large subunit, domain III
    1.5e-14   53.8   0.0    7.4e-14   51.5   0.0    1.9  1  Peptidase_C2  Calpain family cysteine protease


Domain annotation for each model (and alignments):
>> Calpain_III  Calpain large subunit, domain III
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.6   0.0   2.7e-05      0.24       1      56 [.     325     369 ..     325     398 .. 0.78
   2 !   10.0   0.0   8.4e-05      0.75       6      72 ..     412     495 ..     408     518 .. 0.63
   3 !    6.8   0.0   0.00084       7.5     109     138 ..     701     731 ..     661     733 .. 0.79
   4 !   25.9   0.0   1.1e-09   9.7e-06       1     135 [.     749     876 ..     749     881 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 2.7e-05
  Calpain_III   1 geWvkgstAGGcrnkketfwkNPqfrleleeeededeeekkctvlvslmqknrrke 56 
                  g+W+ + +AGG r+ + + + NP + l+++          + +v ++l q++ r  
   KOO21611.1 325 GAWR-EGNAGGPRT-QPSWCINPMYWLTVSA---------SASVSIELSQRDARLP 369
                  7895.567***985.688999********88.........5899999999877743 PP

  == domain 2  score: 10.0 bits;  conditional E-value: 8.4e-05
  Calpain_III   6 gstAGGcrnkketfwkNPqfrleleeeededeeekkctvlvslmqk...................nrrkerkkgeellt.....igfavyk 72 
                  +s++GG r+  +t   NPq+ l+l+  + ++    + +v+v+                       +     ++++++ +     +gf+++k
   KOO21611.1 412 ESNSGGPRT-CKTWHLNPQYWLTLRP-PPTNAAMARVRVVVEAHAPatalagppvgandenaagtK-----RSKHQMTKiapplVGFSLFK 495
                  689***985.689999********88.344444455555555544467777777777666444321.....11122222112335777777 PP

  == domain 3  score: 6.8 bits;  conditional E-value: 0.00084
  Calpain_III 109 fklppGe.YvivPstfepneegeFlLrvFse 138
                  +kl+pG  Y++  +t +p+e+ e+++ vFs+
   KOO21611.1 701 LKLDPGVpYLLAVHTAKPGEQCEYTVSVFSD 731
                  48999955*********************97 PP

  == domain 4  score: 25.9 bits;  conditional E-value: 1.1e-09
  Calpain_III   1 geWvkgstAGGcrnkketfwkNPqfrleleeeededeeekkctvlvslmqknrrkerkkgeellt..igfavykveeeeenrklrkeffaknqevars 96 
                  g+W  +s+AGG+  +  +  +NPq++l l             tv + l +  ++ er  ++++l+  +g++v++   e++++++r+ + a  +++ ++
   KOO21611.1 749 GKW-GKSSAGGSHIEGGAWSRNPQYSLMLAA---------PTTVDITLERPPKKWERMLKTDTLAslMGLYVLR--GEHQHAPVRSPQAAL-AAMIHQ 833
                  789.6788****99999************88.........5899999999988888888888777557888888..678888888887444.568999 PP

  Calpain_III  97 stfinsrevvkrfklpp....GeYvivPstfepneegeFlLrv 135
                   +f+   e+ + + l+p      Y+++P tf  +  g F L v
   KOO21611.1 834 ANFCPMHELKCTLYLEPlpngAPYILMPATFGEGMCGPFSLGV 876
                  99*******98898888777678****************9977 PP

>> Peptidase_C2  Calpain family cysteine protease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.5   0.0   8.3e-18   7.4e-14      57     293 ..      79     308 ..      45     312 .. 0.79

  Alignments for each domain:
  == domain 1  score: 51.5 bits;  conditional E-value: 8.3e-18
  Peptidase_C2  57 CwllaaiasltlkekllkrvvpkeqsfeekyaGifhfrfwrfgewvdvvvDDrlPt.vngklvfvksaeknefWsalleKAyAklhgsyealkggst 152
                    wl  a+a l+++++ll +++  + + +    Gi ++r++++g+w+ +++D +lP+  +gk+ f++sa  +e+W all KA+ + +    ++  +++
    KOO21611.1  79 GWLAGAMALLATRPELLVHLFALTDHLD---RGILTLRIFKHGTWIPITIDAMLPCgPDGKVAFCSSAAADELWPALLTKAMGQAIWAR-HVALDEM 171
                   5********************9985544...6************************6589***********************987654.4666677 PP

  Peptidase_C2 153 sealedftggvtesielelkeapkelfkilkkalergslmgcsieassaeeleaklengLvkgHaYsvtaveevelkkekvkLirlrnPW....... 242
                    +a ++  g+ +   el  +e + +l+++++++++++ l g  +          + +  L     Y ++ ++e       ++L+ +r+P+       
    KOO21611.1 172 PQAPAESQGAPSLE-EL-GAELD-RLWRQMSRTQRKRGLQGLLTLP-------GSSAAPLQPMMLYPILYCREPM---PGLRLLCVRDPYvdahgln 255
                   77777777766543.22.23444.5******999999999886652.......2334567888889999999974...3589999999994333222 PP

  Peptidase_C2 243 ..G.eveWkGawsdkskeWeevseeekeklklkkkedgefwmsfedflknFtkl 293
                     G    ++ aw+ +s+eW++  +   e l l+ +  + fw+ + +  ++F+++
    KOO21611.1 256 htGsAAPFTHAWAPHSNEWQRFPAVAEELLPLS-EGLSAFWIPMAEAAARFASV 308
                   222123466689999999999888887777655.58899999999999999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (902 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       239  (0.0133304); expected 358.6 (0.02)
Passed bias filter:                      187  (0.01043); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.58u 0.23s 00:00:00.81 Elapsed: 00:00:00.38
# Mc/sec: 7063.50
//
Query:       KOO21612.1  [L=838]
Description: myo-inositol-1-phosphate synthase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    7.1e-41  140.6   0.0    1.2e-40  139.8   0.0    1.3  1  NAD_binding_5   Myo-inositol-1-phosphate synthase
    1.7e-27   95.8   0.0    2.6e-27   95.2   0.0    1.3  1  Inos-1-P_synth  Myo-inositol-1-phosphate synthase
    9.1e-19   67.9   0.0    1.9e-18   66.8   0.0    1.5  1  PfkB            pfkB family carbohydrate kinase
     0.0035   17.1   0.1      0.017   14.8   0.1    1.9  1  Med4            Vitamin-D-receptor interacting Mediator subun
  ------ inclusion threshold ------
       0.23   11.4   7.1        5.3    6.9   0.2    3.0  2  Dak2            DAK2 domain
        0.4   11.3   5.1        2.8    8.6   4.5    2.6  2  DUF2563         Protein of unknown function (DUF2563)


Domain annotation for each model (and alignments):
>> NAD_binding_5  Myo-inositol-1-phosphate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  139.8   0.0   4.1e-44   1.2e-40      76     274 ..     155     472 ..     140     509 .. 0.88

  Alignments for each domain:
  == domain 1  score: 139.8 bits;  conditional E-value: 4.1e-44
                    xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxx....x RF
  NAD_binding_5  76 ndlvfgGwDisslnlaeamerakvldkdlqeqlkpelekikplksvydkdfiaanqeeradnvlkgk.skleqleqirkdireFkkknkld....k 166
                    + +v+gGwD++ ++l +a+ +a+++d+dl++ql++++++i  +++v+d  f  +nq  +a++++ +  s+++ql+ +r+dir+Fk++++l     +
     KOO21612.1 155 KSVVIGGWDVRPTPLGDALYKARIFDYDLVRQLRDKMNAIPVMPGVWDAGFYGENQAAEATHIVATAtSRAAQLRWLREDIRRFKAEHELLgesnH 250
                    5689*****************************************************999998765448999****************99555559 PP

                    xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx........... RF
  NAD_binding_5 167 vivlwtanTEryievipgvndtlenllkaikeneeeispstiyavAailegvpyingsPqntlvpglvelAekkgvfiaGdDfKt........... 251
                    v v+w+a+ Er ++  p     +++ll+ai+e+++e+sps++ya+Aa+leg++++ng  qntl pgl+elA  +     G    +           
     KOO21612.1 251 VTVIWSASVERPSQEYPS----AAALLRAIEEDDREVSPSLLYATAALLEGCSFVNGGSQNTLQPGLLELALPECRAAHGAGGGSgpvyvlgtdfk 342
                    ***************999....9************************************************8776666665555556666666666 PP

                    ................................................................................................ RF
  NAD_binding_5 252 ................................................................................................ 251
                                                                                                                    
     KOO21612.1 343 agqtkmktaiveylrtlglrprtiasynhlgnndmknlisprtwaskarvktdifapwaadgpidhkvavlyteqmgdekrdlveytsesfmgceh 438
                    6*********************************************************************************************** PP

                    ...........xxxxxxxxxxxxxxxxxxxxxxx RF
  NAD_binding_5 252 ...........lLAaPlilDLvllveLaqrvevk 274
                                L aPl++D +++++ ++  + +
     KOO21612.1 439 tmltytramdsALCAPLMIDAAVFCAYLAARGAS 472
                    ***********************99866555544 PP

>> Inos-1-P_synth  Myo-inositol-1-phosphate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   95.2   0.0   8.8e-31   2.6e-27       1     109 []     344     449 ..     344     449 .. 0.98

  Alignments for each domain:
  == domain 1  score: 95.2 bits;  conditional E-value: 8.8e-31
                     SHHHHHHHHHHHHHHTT-EEEEEEEEEEE-HHHHHHTTSHHHHHHHHHHHHHHHHHHHSS--EEE....EEEEE-GGGTTEEEEEEEEEEEEGGG CS
  Inos-1-P_synth   1 GqTklksvLaellverglkvksivslNilGnnDgknlseeerfksKkisKssvvddivkanellyvdhevvikYvpylgDsKvaldeieseiflg 95 
                     GqTk+k++++e+l++ gl+++ i+s+N+lGnnD+knl ++++ +sK ++K++++  + ++ ++   dh+v + Y++ +gD+K+ l+e++se f+g
      KOO21612.1 344 GQTKMKTAIVEYLRTLGLRPRTIASYNHLGNNDMKNLISPRTWASKARVKTDIFAPWAADGPI---DHKVAVLYTEQMGDEKRDLVEYTSESFMG 435
                     9********************************************************999886...89*************************** PP

                     EEEEEEEEEEEEH. CS
  Inos-1-P_synth  96 gkntielkleceDS 109
                      ++t+ +++++ DS
      KOO21612.1 436 CEHTMLTYTRAMDS 449
                     *************8 PP

>> PfkB  pfkB family carbohydrate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.8   0.0   6.3e-22   1.9e-18       3     238 ..     550     811 ..     548     820 .. 0.88

  Alignments for each domain:
  == domain 1  score: 66.8 bits;  conditional E-value: 6.3e-22
                 EEEEEEEEEEEEEEECSSH..TTSEE.EESEEEEEEESHHHHHHHHHHHTT-EEEEEEEEESSHHHHHHHHHHHHTTEEETTEEEESSSEEEEEEEEET CS
        PfkB   3 kvvviGealidliavsekl..egelv.evktveksaGGagaNvAvalarlgadvafigavGdDnfGeflleelkkegvdtdyvkidedtrtglalivvd 98 
                 +v + G+ +id+++ s       e++ + +  +  aGG++ N+A al  lg+++a ++a G D +G++l+++ +++g+d + +   ed +t+la++ v 
  KOO21612.1 550 SVICAGLSCIDMQLLSATEpgSREAIaRFSGCSVAAGGSTSNTAAALRTLGVEAAILTATGRDVHGAELRRLYEASGIDLRLMLELEDVSTALAVLPVF 648
                 688999999999999988889777777************************************************************************ PP

                 TTSEEEEEEEEGGGGGHHHHHHH......HHHHHHGCTSEEEEES......EECTTSHHHHHHHHHHHHHHTTEEEEEECESSSHH......HHHHHHH CS
        PfkB  99 edgertivfnrgaaadltkeele......ededlleeadllyisg......llsselpeavleelaeaaknggtfdpnlldplgaq......fkealle 179
                 e+g r   ++++a+  lt++ +         ++++ +a  l+i+       l  ++l++ + e    +  ++g + ++  d  ga       +  +l  
  KOO21612.1 649 ETGGRACWVDLSANDCLTPRTMLaalsakRAAPIVRAARALHIGYphllqgLQGEALRTFIIEGSNVLLAASGVAPLVSIDINGATlgaagdADGVLAP 747
                 9999******************99999888899999999999999*54333333444455555555667777766777777777778877989999999 PP

                 HHCTESEEEEEHHHHHHHHTSCT.....HSHHHHHHHHHHHHHTTSSEEEEEEGGGEEEEEETT CS
        PfkB 180 llaladllkpneeElealtgekl.....edieealaalhklkakgaktvvvtlGkeGalvvekd 238
                 +l ++dll +n +E+ +l+g++      ++ +e+ +++  l+++g+++v vtlG+ Ga+v+ +d
  KOO21612.1 748 ALGHVDLLHGNLDEICHLVGSTPlseatATDDELRRLVAPLLSSGVAVVAVTLGAAGAFVAASD 811
                 99*******************999****99*****************************98754 PP

>> Med4  Vitamin-D-receptor interacting Mediator subunit 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.1   5.7e-06     0.017       4     102 ..      46     213 ..      43     410 .. 0.71

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 5.7e-06
        Med4   4 aekLlaaddelskslkeleehqknearilqLraeveslDekikeivksLkeyekeLkavpdqenskldtasiklaekrevdseeLLdYArrISkytsv. 101
                 ++++l + +e ++++ ++ +  + +    +Lr++++++ + +  +++ +  +  +L+ v++ ++  l++a+     +r   +  +++YA r+S ++++ 
  KOO21612.1  46 IDDVLHCSAEVQAAIARAFKERDGRRHAARLREKAAARQNGLLALAQRMHHADGALTDVLQRSRDALAAAEASASSTRHAPMATIIEYAERVSYSNAAp 144
                 56777788888888888888888888889*******************************************************************996 PP

        Med4 102 ....................................................................p 102
                                                                                     +
  KOO21612.1 145 cgdvafedfvksvviggwdvrptplgdalykarifdydlvrqlrdkmnaipvmpgvwdagfygenqaaE 213
                 666666666666666666666665555555555555555555555555555555555555555555551 PP

>> Dak2  DAK2 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.3   1.3    0.0027       8.2      67     122 ..      71     125 ..      53     140 .. 0.74
   2 ?    6.9   0.2    0.0018       5.3      34      96 ..     457     519 ..     434     521 .. 0.83

  Alignments for each domain:
  == domain 1  score: 6.3 bits;  conditional E-value: 0.0027
                 ...TT---HHHHHHHHHHHHHHHH---TTSSSTHHHHHHHHHHHHT........... CS
        Dak2  67 keeldaedlaaalkaaleaiqavgkarpgdkTmlDvlrpavealekakd.gedlkea 122
                 ++++   + aaa +++l a+ ++  +   d+ + Dvl+   +al++a++  +++++a
  KOO21612.1  71 RHAARLREKAAARQNGLLALAQR--MHHADGALTDVLQRSRDALAAAEAsASSTRHA 125
                 4447788899999**********..*********************88855554444 PP

  == domain 2  score: 6.9 bits;  conditional E-value: 0.0018
                 HHHHHHHHHHH--STHHHHHHHHHHHHHHHC.....TT---HHHHHHHHHHHHHHHH---TTS CS
        Dak2  34 lkalakallsgagGtsGvlysqflralakalkekeeldaedlaaalkaaleaiqavgkarpgd 96 
                 ++a+   +  +a+G+sG+l + +l  l k  +++++ +   + +  ++ +e +++v+ a+ g+
  KOO21612.1 457 IDAAVFCAYLAARGASGALAGAALAYLFKVPEGAAAGTDPGFFHQSRTLVEVLTEVTAAEAGE 519
                 555666677789*******************99999899999999999999999999999886 PP

>> DUF2563  Protein of unknown function (DUF2563)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.6   4.5   0.00095       2.8      17     103 ..      37     120 ..      24     121 .. 0.79
   2 ?   -0.7   0.0      0.73   2.2e+03      34      63 ..     201     231 ..     188     239 .. 0.72

  Alignments for each domain:
  == domain 1  score: 8.6 bits;  conditional E-value: 0.00095
     DUF2563  17 raGghareGadqlarGpllsGmfGdfaaadafhdavvaahaqhvrnlqa.hrealiavGekarhaakGftdmdeqnaeelkavrlsaa 103
                  aG  are  d + +         + a+a af++  +  ha ++r+  a  ++ l+a+ ++ +ha   +td+ ++  ++l a  +sa+
  KOO21612.1  37 AAGSSARESIDDVLHC----SAEVQAAIARAFKERDGRRHAARLREKAAaRQNGLLALAQRMHHADGALTDVLQRSRDALAAAEASAS 120
                 5555555555554332....23346689*****************876516678***************************9999987 PP

  == domain 2  score: -0.7 bits;  conditional E-value: 0.73
     DUF2563  34 llsGmfGdfaaadafhd.avvaahaqhvrnl 63 
                   +G +G+  aa+a h  a +++ a ++r l
  KOO21612.1 201 WDAGFYGENQAAEATHIvATATSRAAQLRWL 231
                 4579999999**9999614444556666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (838 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       606  (0.0338); expected 358.6 (0.02)
Passed bias filter:                      415  (0.0231469); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.69u 0.28s 00:00:00.97 Elapsed: 00:00:00.44
# Mc/sec: 5757.43
//
Query:       KOO21613.1  [L=154]
Description: hypothetical protein Ctob_005979 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (154 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       456  (0.0254337); expected 358.6 (0.02)
Passed bias filter:                      342  (0.0190752); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.39u 0.23s 00:00:00.62 Elapsed: 00:00:00.38
# Mc/sec: 1206.29
//
Query:       KOO21614.1  [L=199]
Description: tRNA (cytosine-5-)-methyltransferase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.7e-12   47.4   0.0    5.7e-09   35.8   0.0    2.0  2  DNA_methylase  C-5 cytosine-specific DNA methylase


Domain annotation for each model (and alignments):
>> DNA_methylase  C-5 cytosine-specific DNA methylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.0   0.0   2.2e-05       0.4     132     165 ..      11      44 ..       3      65 .. 0.85
   2 !   35.8   0.0   3.2e-13   5.7e-09     265     331 ..     120     189 ..      61     192 .. 0.72

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 2.2e-05
                    HHTEEEEEEEEEGGGTT-SB--EEEEEEEEEGGG CS
  DNA_methylase 132 elGYevsykllnasdyGvpQnReRvfivgirkdl 165
                      GY+v       +++Gvp +R R f+++ r ++
     KOO21614.1  11 ARGYHVREVWASPAHFGVPNQRTRYFLLASRVGE 44 
                    56999988888899**************999865 PP

  == domain 2  score: 35.8 bits;  conditional E-value: 3.2e-13
                    ---EEEETTEEE--T.....TTGGG--B-BHHHHHHHHT--TT-----SBH..HHHHHHHTS--HHHHHHHHH CS
  DNA_methylase 265 aeagklqknkerfkp....viekkriRrLtprEaarlqGfPddfefgskks..aaykqiGnsVpvpvieaiak 331
                     + g+   + e   +    v+ + ++R + prE+a l GfP +f f+ + s  ++y+++Gns++v+v+ ++++
     KOO21614.1 120 VDPGVALPDHE---DkcleVLRPLKPRFFAPREVANLHGFPAEFAFPKEVSrkKQYELLGNSLSVQVVAELLR 189
                    33333333333...03455889999*********************9988888***************99886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (199 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       276  (0.0153941); expected 358.6 (0.02)
Passed bias filter:                      260  (0.0145016); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.28s 00:00:00.70 Elapsed: 00:00:00.45
# Mc/sec: 1338.27
//
Query:       KOO21615.1  [L=1085]
Description: hypothetical protein Ctob_005980, partial [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.8e-10   41.3   2.6    2.2e-05   25.0   0.7    2.5  2  Ank_2     Ankyrin repeats (3 copies)
    9.8e-08   32.1   8.0      0.038   14.4   0.0    4.1  4  Ank       Ankyrin repeat
    1.7e-07   31.6   0.5     0.0015   19.1   0.0    2.6  2  Ank_4     Ankyrin repeats (many copies)
    3.7e-06   27.1   0.2      0.036   14.4   0.0    2.7  2  Ank_5     Ankyrin repeats (many copies)
      0.006   17.0   0.0         12    6.8   0.0    3.2  2  Ank_3     Ankyrin repeat
  ------ inclusion threshold ------
        3.1    7.7   6.7        9.2    6.2   6.7    1.9  1  PNRC      Proline-rich nuclear receptor coactivator motif


Domain annotation for each model (and alignments):
>> Ank_2  Ankyrin repeats (3 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.0   6.6e-06      0.02      25      65 ..     153     201 ..     133     207 .. 0.67
   2 !   25.0   0.7   7.2e-09   2.2e-05       7      71 ..     221     289 ..     211     299 .. 0.78

  Alignments for each domain:
  == domain 1  score: 15.5 bits;  conditional E-value: 6.6e-06
       Ank_2  25 ngktaLhyAakngnleivklLleh......ad.ndgrtpLhyAars.gh 65 
                 +g+taL+ A ++g++ ++  L+++       d ++g t+L +A+   g 
  KOO21615.1 153 EGMTALMRASSQGDEACALELIAAgaqidaRDsQEGFTALLMASAMvGA 201
                 6888999888888888877777755565533377788888555433365 PP

  == domain 2  score: 25.0 bits;  conditional E-value: 7.2e-09
       Ank_2   7 ngnlelvklLl.egadpn..k.ngktaLhyAakngnleivklLleh.adndgrtpLhyAarsghleivkl 71 
                  g+  +v++L+ ++ad++  + +g taL++A+ ++++++v+ Ll+h a++    +L +A + g  e++  
  KOO21615.1 221 AGHVGVVHHLVtASADVDaeNnDGATALMLATYAQKEHVVRSLLAHgARQGLAAALAFAEQAGP-EALTC 289
                 36666******99999987536**************9*********877666689999998887.55444 PP

>> Ank  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.4   0.0   1.3e-05     0.038       2      31 ..     154     184 ..     153     185 .. 0.93
   2 !    7.0   0.3    0.0029       8.8       2      32 .]     188     242 ..     187     242 .. 0.69
   3 !   13.3   0.1   2.8e-05     0.085       1      25 [.     243     268 ..     243     274 .. 0.90
   4 ?   -3.2   0.1       4.9   1.5e+04       6      21 ..     827     848 ..     826     855 .. 0.56

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 1.3e-05
                 SBBHHHHHHHHTTHHHHHHHH.TTTSTTCBT CS
         Ank   2 GnTPLHlAatngkkriiklLL.hGAnlnald 31 
                 G+T+L++A++ g++ ++ +L+  GA ++a+d
  KOO21615.1 154 GMTALMRASSQGDEACALELIaAGAQIDARD 184
                 9********999999**99**88*******9 PP

  == domain 2  score: 7.0 bits;  conditional E-value: 0.0029
                 SBBHHHHH..................H.....HHTTHHHHHHHH.TTTSTTCBTT CS
         Ank   2 GnTPLHlA..................a.....tngkkriiklLL.hGAnlnaldn 32 
                 G+T+L +A                  +       g++ +++ L+  +A+++a +n
  KOO21615.1 188 GFTALLMAsamvgaaeaaqapcgltlCaahdaFAGHVGVVHHLVtASADVDAENN 242
                 99999998555555555555544444155666666677******779*****997 PP

  == domain 3  score: 13.3 bits;  conditional E-value: 2.8e-05
                 TSBBHHHHHHHHTTHHHHHHHH.TTT CS
         Ank   1 dGnTPLHlAatngkkriiklLL.hGA 25 
                 dG T+L+lA +  k+++++ LL hGA
  KOO21615.1 243 DGATALMLATYAQKEHVVRSLLaHGA 268
                 899*****88777799*********8 PP

  == domain 4  score: -3.2 bits;  conditional E-value: 4.9
                 HHHHH.HHTT.....HHHHHHH CS
         Ank   6 LHlAa.tngk.....kriiklL 21 
                 L++Aa ++g      ++++ +L
  KOO21615.1 827 LMVAAaCRGLaavssADVLAAL 848
                 7876654454444445566655 PP

>> Ank_4  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.1   0.0   4.9e-07    0.0015       1      44 [.     154     197 ..     154     198 .. 0.94
   2 !   10.2   0.1   0.00031      0.92       6      54 ..     214     263 ..     210     264 .. 0.85

  Alignments for each domain:
  == domain 1  score: 19.1 bits;  conditional E-value: 4.9e-07
       Ank_4   1 eltaLhyaaisgrlelvrlLlekgadinaqdnrsGetalhiAak 44 
                 ++taL +a ++g++ ++  L++ ga+i+a+d+ +G+tal +A  
  KOO21615.1 154 GMTALMRASSQGDEACALELIAAGAQIDARDSQEGFTALLMASA 197
                 59****************************9999******9975 PP

  == domain 2  score: 10.2 bits;  conditional E-value: 0.00031
       Ank_4   6 hyaai..sgrlelvrlLlekgadinaqdnrsGetalhiAakrgnveilklL 54 
                  +a    +g++ +v+ L+   ad++a  n++G tal  A +  + ++++ L
  KOO21615.1 214 CAAHDafAGHVGVVHHLVTASADVDAE-NNDGATALMLATYAQKEHVVRSL 263
                 44444889**********99******5.*************9999998755 PP

>> Ank_5  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.4   0.0   1.2e-05     0.036      15      56 .]     153     195 ..     148     195 .. 0.94
   2 !    9.9   0.1   0.00032      0.95       6      40 ..     234     268 ..     230     270 .. 0.90

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 1.2e-05
       Ank_5  15 ggntpLhvAakygaadvvrlLlargadlnltdsrG.ltaldlA 56 
                 +g+t+L+ A+++g   ++++L+a ga ++++ds+   tal +A
  KOO21615.1 153 EGMTALMRASSQGDEACALELIAAGAQIDARDSQEgFTALLMA 195
                 79********************************999999776 PP

  == domain 2  score: 9.9 bits;  conditional E-value: 0.00032
       Ank_5   6 padvnrldgggntpLhvAakygaadvvrlLlarga 40 
                 +adv++++++g t+L++A +++   vvr Lla+ga
  KOO21615.1 234 SADVDAENNDGATALMLATYAQKEHVVRSLLAHGA 268
                 59*******************99999999998886 PP

>> Ank_3  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.7   0.0    0.0047        14       1      30 [.     153     181 ..     153     182 .. 0.88
   2 !    6.8   0.0     0.004        12       1      27 [.     243     268 ..     243     269 .. 0.93

  Alignments for each domain:
  == domain 1  score: 6.7 bits;  conditional E-value: 0.0047
       Ank_3   1 nGetpLhlAarsgnleivkfLlenkgadvn 30 
                 +G+t+L++A ++g+ + +  L+   ga ++
  KOO21615.1 153 EGMTALMRASSQGDEACALELIA-AGAQID 181
                 59*************99999999.788776 PP

  == domain 2  score: 6.8 bits;  conditional E-value: 0.004
       Ank_3   1 nGetpLhlAarsgnleivkfLlenkga 27 
                 +G t+L+lA  +++  +v+ Ll  +ga
  KOO21615.1 243 DGATALMLATYAQKEHVVRSLLA-HGA 268
                 699********************.786 PP

>> PNRC  Proline-rich nuclear receptor coactivator motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.2   6.7    0.0031       9.2      10      19 ..    1063    1072 ..    1063    1073 .. 0.94

  Alignments for each domain:
  == domain 1  score: 6.2 bits;  conditional E-value: 0.0031
        PNRC   10 PePSsLPlPs 19  
                  P+PS+LP+Ps
  KOO21615.1 1063 PAPSALPMPS 1072
                  9********9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1085 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2179  (0.121535); expected 358.6 (0.02)
Passed bias filter:                      540  (0.0301188); expected 358.6 (0.02)
Passed Vit filter:                       177  (0.00987227); expected 17.9 (0.001)
Passed Fwd filter:                        63  (0.00351386); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 1.66u 0.38s 00:00:02.04 Elapsed: 00:00:00.55
# Mc/sec: 5949.32
//
Query:       KOO21616.1  [L=230]
Description: hypothetical protein Ctob_005981 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (230 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       479  (0.0267165); expected 358.6 (0.02)
Passed bias filter:                      336  (0.0187406); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.40u 0.25s 00:00:00.65 Elapsed: 00:00:00.40
# Mc/sec: 1732.63
//
Query:       KOO21617.1  [L=244]
Description: acetylglutamate kinase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.3e-41  140.6   2.8      7e-41  140.4   2.8    1.0  1  AA_kinase  Amino acid kinase family
  ------ inclusion threshold ------
      0.099   12.6   0.0       0.17   11.8   0.0    1.5  1  MinC_N     Septum formation inhibitor MinC, N-terminal domain


Domain annotation for each model (and alignments):
>> AA_kinase  Amino acid kinase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  140.4   2.8   7.8e-45     7e-41      22     240 ..       7     220 ..       1     221 [. 0.93

  Alignments for each domain:
  == domain 1  score: 140.4 bits;  conditional E-value: 7.8e-45
                 HHHHHHHHHHHHTTEEEEEE--HHHHHHHHHHTCCCCCHHHC....E..HHHHHHHHHHHHHHHHHHHHHHHHHTTHGEEEE-GGGTCEECCCE..... CS
   AA_kinase  22 rlaeqiaalkesgnklvvVhGggsftdgllalksglssgelaaglrstleeagevatrdalaslgerlvaallaaglpavglsaaaldateagr...de 117
                 ++a++   l++ g  +vvVhGgg++++++l++  +++s++ + glr+t  + +ev++++++++l++++ +a+ aag +avg+s+++  ++++ +   + 
  KOO21617.1   7 SFAADMVLLQSLGLLPVVVHGGGPQINKMLDK-LEIQSTFVN-GLRVTTPAVMEVVEMVLCGQLNKQIASAINAAGGRAVGISGKDDAMVTGSIknpEL 103
                 7888888899999999****************.*********.******************************************************** PP

                 HHHTTTCEEECCHHHHHHHTT-EEEEESEEEEETTTE.EEEE-HHHHHHHHHHHCTSSEEEEEESSSSCESSTTTTCCTTCECCEEEHHHCHH.CSSS. CS
   AA_kinase 118 gsdgnvesvdaeaieelleagvvpvltgfigldeege.lgrgssDtiaallAealgAdkliiltdVdGVydadpkkvpdarllpeisvdeaee.sasel 214
                 g +g+ e+v+++ ++ lle+g++pv+++ +  + eg+ ++++++Dt+a  +A al+A++l++ltdV GV+d +       +l+p+++   a++   ++ 
  KOO21617.1 104 GLVGEAEHVKTSLLHMLLEEGIIPVIAPVA--TGEGGtSLNLNADTMAGEIAGALRAKQLLLLTDVAGVLDGNK------QLIPTLTTAAAQQlCVDGT 194
                 ****************************55..66666699******************************9976......8899999999999888999 PP

                 TTTHHHHCHHHHHHHHHCTT-EEEEE CS
   AA_kinase 215 atgGmkvkhpaalaaarrggipvvIt 240
                 atgGm++k++ a+ a+r g   +vI+
  KOO21617.1 195 ATGGMIPKIENAISAVRAGTSTAVIM 220
                 *******************7777775 PP

>> MinC_N  Septum formation inhibitor MinC, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   1.9e-05      0.17      45      97 ..      52     105 ..      14     112 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 1.9e-05
      MinC_N  45 napvvldvskl..eekvdlkaLkelisraglrivgvsgckdkaskeeimkagLpv 97 
                  +p v++v ++  +++++ k + ++i++ag r vg+sg  d++ +  i +  L +
  KOO21617.1  52 TTPAVMEVVEMvlCGQLN-KQIASAINAAGGRAVGISGKDDAMVTGSIKNPELGL 105
                 689******9999****9.679*******************99988886665555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (244 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       384  (0.0214178); expected 358.6 (0.02)
Passed bias filter:                      291  (0.0162307); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.40u 0.28s 00:00:00.68 Elapsed: 00:00:00.42
# Mc/sec: 1724.81
//
Query:       KOO21618.1  [L=364]
Description: hypothetical protein Ctob_005986 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    0.00012   21.4   4.7      0.016   14.5   0.3    3.4  4  PSII_BNR        Photosynthesis system II assembly factor YCF4
     0.0037   16.1   1.5       0.38    9.5   0.1    2.7  4  Sortilin-Vps10  Sortilin, neurotensin receptor 3,
  ------ inclusion threshold ------
      0.022   14.7  13.4          8    6.9   2.5    5.5  5  BNR             BNR/Asp-box repeat


Domain annotation for each model (and alignments):
>> PSII_BNR  Photosynthesis system II assembly factor YCF48
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.5   0.3   2.6e-06     0.016       5      53 ..      15      67 ..      11      82 .. 0.81
   2 ?   -3.1   0.0      0.59   3.5e+03     254     270 ..     140     156 ..     117     159 .. 0.72
   3 !    5.8   0.1    0.0012       7.1      38      73 ..     233     265 ..     211     277 .. 0.75
   4 ?    1.0   0.0     0.034     2e+02      74      97 ..     292     319 ..     271     344 .. 0.66

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 2.6e-06
                SS--EEEEE-S-SS-EEEEEESSSS-EEEEETTTE....EEEESSTTSS-EE- CS
    PSII_BNR  5 ssspWevvelptestllDiaftdekhGflvGtkat....lletlDGGktWeer 53
                + ++W + +++++++ + ia++dek G+   t+ +    ++ t DGG+tW++ 
  KOO21618.1 15 AGADWAIKTMDFSAVTIGIAMKDEKTGWTATTNGAtavhIVKTEDGGNTWNRV 67
                5678************************9987754333389*********864 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 0.59
                 T-EEEESSTTSS-EE-G CS
    PSII_BNR 254 gtllvskDgGktwkkdk 270
                 g +  s+D G+t+k ++
  KOO21618.1 140 GGVCLSNDMGETYKCKD 156
                 55778999999998654 PP

  == domain 3  score: 5.8 bits;  conditional E-value: 0.0012
                 TEEEEESSTTSS-EE-----S--.--EEEEEEEETT CS
    PSII_BNR  38 atlletlDGGktWeersldleeevnyrlesvsfkgd 73 
                 a l  ++DGG+tWe+    ++++ ny++++++  +d
  KOO21618.1 233 AELWKSSDGGDTWENL---ISDTGNYYFNDIDCFDD 265
                 4578899999999975...34455889999985443 PP

  == domain 4  score: 1.0 bits;  conditional E-value: 0.034
                 EEEEEEE...TT.EEEEESSTTSS-EE- CS
    PSII_BNR  74 egwivGk...Ps.lllhttdgGksWeri 97 
                 e ++ G+   Ps l lh+tdgG s+ ++
  KOO21618.1 292 EFHVGGRlisPSaLGLHSTDGGASFIKL 319
                 4333332333541559999999988654 PP

>> Sortilin-Vps10  Sortilin, neurotensin receptor 3,
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.8   0.3    0.0017        10     357     395 ..      30      70 ..      14     113 .. 0.70
   2 ?   -4.1   0.0      0.84     5e+03       3      17 ..     142     156 ..     140     162 .. 0.74
   3 !    9.5   0.1   6.4e-05      0.38      96     157 ..     232     293 ..     221     311 .. 0.78
   4 ?   -2.4   0.0      0.25   1.5e+03       6      31 ..     309     334 ..     306     346 .. 0.74

  Alignments for each domain:
  == domain 1  score: 4.8 bits;  conditional E-value: 0.0017
                     STT-EEEEEEEESSHHSS...S-EEEEESSSSSS-EEEESS CS
  Sortilin-Vps10 357 ApGlimgvGnvGkslksy..eeadtfiSrDaGltWkevlkg 395
                     ++G+ m   ++G + +++  +  ++  ++D+G tW++v ++
      KOO21618.1  30 TIGIAMKDEKTGWTATTNgaTAVHIVKTEDGGNTWNRVANQ 70 
                     55555655555544444411233334477777777777655 PP

  == domain 2  score: -4.1 bits;  conditional E-value: 0.84
                     EEEESSTTSS-EE-G CS
  Sortilin-Vps10   3 vyiSeDeGktwkkvk 17 
                     v +S+D G+t+k ++
      KOO21618.1 142 VCLSNDMGETYKCKD 156
                     667888888888665 PP

  == domain 3  score: 9.5 bits;  conditional E-value: 6.4e-05
                     TS-EEEESSTTSSEEEEESSEEEEEE-S.....TT-EEEEE-SSS-TTTTTTSEEEEEESST CS
  Sortilin-Vps10  96 kkkayystdggkswkklqesvkkcewaksskkkeekilceekeeeseseekkklrlvssddf 157
                     +++++ s+dgg++w++l +++ +++++  +  +++  ++++++e ++ ++   ++++s d+f
      KOO21618.1 232 TAELWKSSDGGDTWENLISDTGNYYFNDIDCFDDKHCFYMVHTEPTDGSSLMAVKMLSEDEF 293
                     57899999999999999999999999887777788888888877776666666666666665 PP

  == domain 4  score: -2.4 bits;  conditional E-value: 0.25
                     ESSTTSS-EE-GGGGTTEEBE-EEE- CS
  Sortilin-Vps10   6 SeDeGktwkkvkeklkgeaiqeivvh 31 
                     S+D G+++ k+ + ++ge+i+++ + 
      KOO21618.1 309 STDGGASFIKLGAGIRGEMITSMSFP 334
                     89999999999988888888755544 PP

>> BNR  BNR/Asp-box repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.2   0.2     0.011        65       3      11 ..      57      65 ..      55      66 .. 0.86
   2 ?   -0.6   0.0      0.39   2.4e+03       2       6 ..      99     103 ..      98     103 .. 0.89
   3 ?    2.0   0.0     0.056   3.4e+02       3      11 ..     145     153 ..     144     153 .. 0.87
   4 ?    6.9   2.5    0.0013         8       2      11 ..     237     246 ..     236     247 .. 0.88
   5 ?    4.6   0.0     0.008        48       2      10 ..     308     316 ..     307     316 .. 0.88

  Alignments for each domain:
  == domain 1  score: 4.2 bits;  conditional E-value: 0.011
                ESSTTSS-E CS
         BNR  3 StDgGktWs 11
                + DgG tW+
  KOO21618.1 57 TEDGGNTWN 65
                78******8 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 0.39
                 EESST CS
         BNR   2 yStDg 6  
                 yStDg
  KOO21618.1  99 YSTDG 103
                 9***8 PP

  == domain 3  score: 2.0 bits;  conditional E-value: 0.056
                 ESSTTSS-E CS
         BNR   3 StDgGktWs 11 
                 S D G+t++
  KOO21618.1 145 SNDMGETYK 153
                 99*****85 PP

  == domain 4  score: 6.9 bits;  conditional E-value: 0.0013
                 EESSTTSS-E CS
         BNR   2 yStDgGktWs 11 
                  S DgG tW+
  KOO21618.1 237 KSSDGGDTWE 246
                 69*******7 PP

  == domain 5  score: 4.6 bits;  conditional E-value: 0.008
                 EESSTTSS- CS
         BNR   2 yStDgGktW 10 
                 +StDgG ++
  KOO21618.1 308 HSTDGGASF 316
                 6*****997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (364 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       294  (0.016398); expected 358.6 (0.02)
Passed bias filter:                      252  (0.0140554); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.46u 0.24s 00:00:00.70 Elapsed: 00:00:00.39
# Mc/sec: 2771.38
//
Query:       KOO21619.1  [L=252]
Description: hypothetical protein Ctob_005987, partial [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    7.6e-06   26.2   0.4    1.1e-05   25.6   0.4    1.3  1  Neur_chan_memb  Neurotransmitter-gated ion-channel transmembr


Domain annotation for each model (and alignments):
>> Neur_chan_memb  Neurotransmitter-gated ion-channel transmembrane region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.6   0.4   6.1e-10   1.1e-05       8      83 ..      76     151 ..      74     184 .. 0.87

  Alignments for each domain:
  == domain 1  score: 25.6 bits;  conditional E-value: 6.1e-10
                     HHHHHHHHHHHHHCT.TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-STTHHHHHHHHHHHHHHHHHHHHHHHHH CS
  Neur_chan_memb   8 isiLsvlvFyLpsda.gekvtLgIsvlLslTvfllliteilPktSlvipLigkYLlftmvfvtlsivetvfVlnvhh 83 
                     i  L+  + ++p+    ++ +L  ++lL+lT +  + +++lP  +++++L++ Y   +  +v  +i+  v+   ++ 
      KOO21619.1  76 IAALACASTFIPAVEiHDRLALTFTILLTLTSIKYTSSDSLPALPYSTALDV-YHEACHYLVYGVIMHNVIFFLYAA 151
                     667777788899988899**********************************.**********99998887655554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (252 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       655  (0.036533); expected 358.6 (0.02)
Passed bias filter:                      413  (0.0230353); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.25s 00:00:00.70 Elapsed: 00:00:00.41
# Mc/sec: 1822.87
//
Query:       KOO21620.1  [L=1038]
Description: annexin a11 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.4e-72  238.4  11.3    2.9e-15   56.1   0.2    8.4  8  Annexin   Annexin


Domain annotation for each model (and alignments):
>> Annexin  Annexin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.2   0.1   3.5e-15   6.3e-11       2      63 ..      95     160 ..      94     162 .. 0.89
   2 !   19.3   0.0   4.8e-08   0.00087       5      60 ..     174     229 ..     170     235 .. 0.91
   3 !    9.0   0.0   7.9e-05       1.4      16      49 ..     275     308 ..     266     314 .. 0.91
   4 !   22.8   0.0     4e-09   7.2e-05       3      63 ..     334     394 ..     332     397 .. 0.95
   5 !   34.1   0.1   1.2e-12   2.1e-08       2      56 ..     448     502 ..     447     508 .. 0.95
   6 !   20.6   0.0   1.9e-08   0.00033      13      64 ..     532     584 ..     519     586 .. 0.83
   7 !   33.3   0.3   2.2e-12   3.9e-08       2      65 ..     601     664 ..     600     665 .. 0.94
   8 !   56.1   0.2   1.6e-19   2.9e-15       3      65 ..     674     736 ..     673     737 .. 0.97

  Alignments for each domain:
  == domain 1  score: 42.2 bits;  conditional E-value: 3.5e-15
                 HHHHHHHHHS....SSSSCHHHHHHHHHHSTHHHHHHHHHHHHHHHSS-HHHHHHHHS-HHHHHHH CS
     Annexin   2 dAelLkkamk....glGtdektlieIlatRsnaqlqaifeeYkkkygkdLekdIksetsGdfekll 63 
                 dAe +++am+    glG+++++li  ++tR++ ql  +++ Y++ky kd+ + +k+et G++ +++
  KOO21620.1  95 DAEAIYEAMNggflGLGCNHNKLIAAVCTRTKSQLSTTAKRYRAKYDKDIREEVKGETGGNYGRMM 160
                 78877777773333689*********************************************9997 PP

  == domain 2  score: 19.3 bits;  conditional E-value: 4.8e-08
                 HHHHHHSSSSSCHHHHHHHHHHSTHHHHHHHHHHHHHHHSS-HHHHHHHHS-HHHH CS
     Annexin   5 lLkkamkglGtdektlieIlatRsnaqlqaifeeYkkkygkdLekdIksetsGdfe 60 
                 ++ ka++g+Gt e  lie ++t+ ++ lqa +++ + ++ k+L++ ++ e+  ++ 
  KOO21620.1 174 MIDKACEGWGTAEMILIELFITCEQQWLQAGKQAWEGRHDKSLIDYVTAELGSSYS 229
                 6789*********************************************9987775 PP

  == domain 3  score: 9.0 bits;  conditional E-value: 7.9e-05
                 CHHHHHHHHHHSTHHHHHHHHHHHHHHHSS-HHH CS
     Annexin  16 dektlieIlatRsnaqlqaifeeYkkkygkdLek 49 
                 +e+ +i+I+ t s  q ++ +e +++ky+++L k
  KOO21620.1 275 NEDLWIDIIGTNSIMQNMKLAEVFENKYSQSLRK 308
                 899*****************************87 PP

  == domain 4  score: 22.8 bits;  conditional E-value: 4e-09
                 HHHHHHHHSSSSSCHHHHHHHHHHSTHHHHHHHHHHHHHHHSS-HHHHHHHHS-HHHHHHH CS
     Annexin   3 AelLkkamkglGtdektlieIlatRsnaqlqaifeeYkkkygkdLekdIksetsGdfekll 63 
                 A ++++amkg+ td  tl++ l       +    ++Y++kyg  L +++++e+ G+f k+ 
  KOO21620.1 334 AMRIESAMKGWFTDAGTLCRLLGGLDDRLMAGLLDAYERKYGLPLASALNNEIGGNFAKAA 394
                 77899****************************************************9986 PP

  == domain 5  score: 34.1 bits;  conditional E-value: 1.2e-12
                 HHHHHHHHHSSSSSCHHHHHHHHHHSTHHHHHHHHHHHHHHHSS-HHHHHHHHS- CS
     Annexin   2 dAelLkkamkglGtdektlieIlatRsnaqlqaifeeYkkkygkdLekdIksets 56 
                 d+e+L +a kg+ td++++i+ ++ Rs+ +l +i   Y++   k+L + I+  +s
  KOO21620.1 448 DVETLAEATKGITTDDSAFIKTITCRSKRHLGRISYMYREANDKSLSELISANCS 502
                 7899**********************************************99988 PP

  == domain 6  score: 20.6 bits;  conditional E-value: 1.9e-08
                 SS.SCHHHHHHHHHHSTHHHHHHHHHHHHHHHSS-HHHHHHHHS-HHHHHHHH CS
     Annexin  13 lG.tdektlieIlatRsnaqlqaifeeYkkkygkdLekdIksetsGdfeklll 64 
                 +G  d+ +lie l+ R +   +a++++ +kk  ++L + +++e+ Gd++ + l
  KOO21620.1 532 IGeNDKCALIEFLCARHPRRVRATKKAWEKKNDQSLVDRLSDELNGDLKTIAL 584
                 452456689***************************************98766 PP

  == domain 7  score: 33.3 bits;  conditional E-value: 2.2e-12
                 HHHHHHHHHSSSSSCHHHHHHHHHHSTHHHHHHHHHHHHHHHSS-HHHHHHHHS-HHHHHHHHH CS
     Annexin   2 dAelLkkamkglGtdektlieIlatRsnaqlqaifeeYkkkygkdLekdIksetsGdfekllla 65 
                 dAel k+   ++  d  + ieIl++ sn+q  ai ++Y+ +y  +L  +I +e  Gd++ +l a
  KOO21620.1 601 DAELAKAQAAEIHDDMGKAIEILCSNSNKQNAAINHAYEMEYDMSLGRAIGEEYNGDVKAALTA 664
                 78888888888889999********************************************998 PP

  == domain 8  score: 56.1 bits;  conditional E-value: 1.6e-19
                 HHHHHHHHSSSSSCHHHHHHHHHHSTHHHHHHHHHHHHHHHSS-HHHHHHHHS-HHHHHHHHH CS
     Annexin   3 AelLkkamkglGtdektlieIlatRsnaqlqaifeeYkkkygkdLekdIksetsGdfekllla 65 
                 A +Lk+++kg+Gt + t+++I+  + + ++++i+++Y +kyg+ L +dI++e+sGd+++l +a
  KOO21620.1 674 ASRLKASFKGFGTSDRTVCRIIGAHDKDEIKEIAKAYDEKYGRRLKNDIQQECSGDYRRLAVA 736
                 779*********************************************************998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1038 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       867  (0.0483574); expected 358.6 (0.02)
Passed bias filter:                      632  (0.0352502); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.77u 0.28s 00:00:01.05 Elapsed: 00:00:00.42
# Mc/sec: 7336.69
//
Query:       KOO21621.1  [L=240]
Description: hypothetical protein Ctob_001782 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.8e-09   36.2   1.1     0.0024   17.7   0.1    2.3  2  EF-hand_6  EF-hand domain
    1.2e-08   33.8   0.3     0.0034   16.8   0.0    2.3  2  EF-hand_1  EF hand
    1.3e-08   35.2   3.1    1.9e-06   28.2   0.5    1.7  2  EF-hand_7  EF-hand domain pair
    1.5e-08   33.8   1.8     0.0037   16.7   0.1    2.3  2  EF-hand_5  EF hand
    7.6e-05   22.5   0.2       0.12   12.2   0.0    2.3  2  EF-hand_8  EF-hand domain pair


Domain annotation for each model (and alignments):
>> EF-hand_6  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.7   0.1   6.7e-07    0.0024       2      31 .]      85     113 ..      84     113 .. 0.92
   2 !   17.1   0.1     1e-06    0.0036       6      29 ..     125     147 ..     122     151 .. 0.93

  Alignments for each domain:
  == domain 1  score: 17.7 bits;  conditional E-value: 6.7e-07
   EF-hand_6   2 lreaFklfDkdgdGkidaeElrkalrkalg 31 
                 + + F+++D d +Gki++  +r al+ +lg
  KOO21621.1  85 IIDTFREIDEDQSGKINKRGFRLALQ-KLG 113
                 7899*********************9.776 PP

  == domain 2  score: 17.1 bits;  conditional E-value: 1e-06
   EF-hand_6   6 FklfDkdgdGkidaeElrkalrka 29 
                 F+ +D+d++G i +eEl+ +lr +
  KOO21621.1 125 FDSLDNDRSGAIEYEELKTHLR-L 147
                 9********************9.4 PP

>> EF-hand_1  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.1   3.1e-06     0.011       2      28 ..      85     111 ..      84     112 .. 0.82
   2 !   16.8   0.0   9.5e-07    0.0034       4      27 ..     123     146 ..     120     148 .. 0.87

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 3.1e-06
                 HHHHHHHHTTTSSSEEEHHHHHHHHHH CS
   EF-hand_1   2 lkeiFrefDkDgdGkIdfeEfkellkk 28 
                 + + Fre+D D++GkI++  f+ +l+k
  KOO21621.1  85 IIDTFREIDEDQSGKINKRGFRLALQK 111
                 5689*************9777776665 PP

  == domain 2  score: 16.8 bits;  conditional E-value: 9.5e-07
                 HHHHHHTTTSSSEEEHHHHHHHHH CS
   EF-hand_1   4 eiFrefDkDgdGkIdfeEfkellk 27 
                   F+ +D D++G I++eE+k+ l+
  KOO21621.1 123 LTFDSLDNDRSGAIEYEELKTHLR 146
                 5799****************9887 PP

>> EF-hand_7  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.2   0.5   5.4e-10   1.9e-06       3      68 ..      84     143 ..      82     146 .. 0.88
   2 !   14.5   0.1   9.9e-06     0.036       8      28 ..     125     144 ..     118     177 .. 0.84

  Alignments for each domain:
  == domain 1  score: 28.2 bits;  conditional E-value: 5.4e-10
   EF-hand_7   3 klkeaFkelDtdgdgyldkeellrllrkifqgagegsklsdeelellfkefDtdkdGvisfdEFlk 68 
                 ++ + F+e+D d++g+++k+ ++ +l+        g + ++   +l f+ +D d++G i ++E+++
  KOO21621.1  84 RIIDTFREIDEDQSGKINKRGFRLALQ------KLGIVAHKSTCDLTFDSLDNDRSGAIEYEELKT 143
                 67889******************8888......777777777799******************986 PP

  == domain 2  score: 14.5 bits;  conditional E-value: 9.9e-06
   EF-hand_7   8 FkelDtdgdgyldkeellrll 28 
                 F++lD+d++g +++eel+  +
  KOO21621.1 125 FDSLDNDRSGAIEYEELK-TH 144
                 ****************99.44 PP

>> EF-hand_5  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.3   1.4e-06    0.0049       1      18 [.      85     102 ..      85     103 .. 0.91
   2 !   16.7   0.1     1e-06    0.0037       4      23 ..     124     143 ..     122     145 .. 0.91

  Alignments for each domain:
  == domain 1  score: 16.3 bits;  conditional E-value: 1.4e-06
                 HHHHHHHH-SS-SSCE-H CS
   EF-hand_5   1 lkdtFqaiDlNgDGkIsk 18 
                 + dtF++iD +++GkI+k
  KOO21621.1  85 IIDTFREIDEDQSGKINK 102
                 679*************87 PP

  == domain 2  score: 16.7 bits;  conditional E-value: 1e-06
                 HHHHH-SS-SSCE-HHHHHH CS
   EF-hand_5   4 tFqaiDlNgDGkIskeELkt 23 
                 tF+ +D +++G I  eELkt
  KOO21621.1 124 TFDSLDNDRSGAIEYEELKT 143
                 8*****************98 PP

>> EF-hand_8  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.0   0.0   0.00017      0.61      32      49 ..      89     106 ..      87     112 .. 0.86
   2 !   12.2   0.0   3.5e-05      0.12      10      49 ..     105     142 ..     102     147 .. 0.91

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.00017
   EF-hand_8  32 frefDtdgdGkisfeEFc 49 
                 fre+D+d++Gki++  F 
  KOO21621.1  89 FREIDEDQSGKINKRGFR 106
                 9************98885 PP

  == domain 2  score: 12.2 bits;  conditional E-value: 3.5e-05
   EF-hand_8  10 lrrilrilglkkglseeevdilfrefDtdgdGkisfeEFc 49 
                 +r +l +lg+     ++ +d  f+ +D d++G+i +eE  
  KOO21621.1 105 FRLALQKLGIV--AHKSTCDLTFDSLDNDRSGAIEYEELK 142
                 88899888999..99***********************75 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (240 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       521  (0.0290591); expected 358.6 (0.02)
Passed bias filter:                      337  (0.0187964); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.42u 0.26s 00:00:00.68 Elapsed: 00:00:00.41
# Mc/sec: 1762.02
//
Query:       KOO21622.1  [L=578]
Description: plant synaptotagmin [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
      4e-35  120.2   0.0    2.3e-17   63.2   0.0    2.3  2  C2            C2 domain
      1e-18   65.4   8.9    7.5e-06   25.1   0.3    4.1  3  EF-hand_1     EF hand
    8.3e-18   62.7   3.3    3.4e-05   23.4   0.1    3.8  3  EF-hand_6     EF-hand domain
    1.7e-15   55.7   9.7    8.1e-05   21.9   0.0    3.9  3  EF-hand_5     EF hand
    6.1e-14   51.6   5.6      4e-11   42.6   0.2    2.7  2  EF-hand_8     EF-hand domain pair
    1.1e-11   45.1   8.0    2.8e-09   37.3   1.7    2.6  2  EF-hand_7     EF-hand domain pair
     0.0048   17.0   0.1      0.012   15.6   0.0    1.7  2  Acyltransf_C  Acyltransferase C-terminus
  ------ inclusion threshold ------
      0.032   14.2   5.1        1.2    9.1   0.4    3.0  3  EF-hand_4     Cytoskeletal-regulatory complex EF hand
       0.22   11.9   0.7        3.2    8.2   0.0    3.0  3  EF-hand_9     EF-hand domain


Domain annotation for each model (and alignments):
>> C2  C2 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.2   0.0   1.1e-20   2.3e-17       1      94 [.     230     324 ..     230     331 .. 0.92
   2 !   54.9   0.0   4.4e-18   8.8e-15       1      96 [.     345     449 ..     345     456 .. 0.86

  Alignments for each domain:
  == domain 1  score: 63.2 bits;  conditional E-value: 1.1e-20
                 TEEEEEEEEEESSSSSSTTSSCEEEEEEEEECEEEEEE-SCSSSSSSEEEEEEEEEESC..HTTSEEEEEEEEECSSSTEEEEEEEEEEGHHHHTT CS
          C2   1 gklevtvieAknLpnkdkkgssdpyvkvsldgkqkakTrviknslnPvWnekftfevae..leeakLeveVfdndrlskddfiGkveiplstllsg 94 
                 g+l+vt+++A+nL   d +g+sdpyv+v+  g   ++T+ +  +l+PvWn++++f+ +     ++ L++++fd d++s dd +G+v+++l+ l  g
  KOO21622.1 230 GTLKVTILHATNLLSADSNGKSDPYVVVKA-GGMAQRTKHVLETLDPVWNKTIEFQGKLetFLARPLHLKLFDMDVFSADDPLGEVKVSLDYLILG 324
                 689***************************.********99**************887766889*************************9985554 PP

  == domain 2  score: 54.9 bits;  conditional E-value: 4.4e-18
                 TEEEEEEEEEESSSSSSTTSSCEEEEEEEEECEEEEEE-SCSSSSSSEEEEEEEEEESC..HTTSEEEEEEEEECSSSTEE.......EEEEEEEEGHH CS
          C2   1 gklevtvieAknLpnkdkkgssdpyvkvsldgkqkakTrviknslnPvWnekftfevae..leeakLeveVfdndrlskdd.......fiGkveiplst 90 
                 g+l+vt+++A++L + d +g sdpyv v+  g   +k++vi+++l+PvWn + +++ +     ++ +++e+fd+d + +d+        +G v+ipl++
  KOO21622.1 345 GTLKVTIKHANGLMAADSNGLSDPYVAVHA-GGIAKKSKVIPKTLDPVWNVTWELQGKLevFLAEPMHIEIFDKDPFISDKslklyddPLGDVRIPLDD 442
                 689***************************.******************998888777677889************7666666666668*********9 PP

                 .HHTTHH CS
          C2  91 .llsgee 96 
                  +++g +
  KOO21622.1 443 iIARGGK 449
                 5444444 PP

>> EF-hand_1  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.7   1.4   2.2e-08   4.4e-05       5      28 ..       1      24 [.       1      25 [. 0.94
   2 !   25.1   0.3   3.7e-09   7.5e-06       3      28 ..      65      90 ..      63      91 .. 0.92
   3 !   20.1   0.0   1.5e-07    0.0003       2      28 ..     100     126 ..      99     127 .. 0.91

  Alignments for each domain:
  == domain 1  score: 22.7 bits;  conditional E-value: 2.2e-08
                HHHHHTTTSSSEEEHHHHHHHHHH CS
   EF-hand_1  5 iFrefDkDgdGkIdfeEfkellkk 28
                ++++fD+DgdG Id+ Ef+ ++++
  KOO21622.1  1 MIADFDVDGDGEIDLMEFRIMMRA 24
                899*******************96 PP

  == domain 2  score: 25.1 bits;  conditional E-value: 3.7e-09
                HHHHHHHTTTSSSEEEHHHHHHHHHH CS
   EF-hand_1  3 keiFrefDkDgdGkIdfeEfkellkk 28
                 e Fr++D+Dg+G I+ +Ef ++++ 
  KOO21622.1 65 FETFRKIDVDGSGEIEVDEFSDAMRL 90
                689*********************96 PP

  == domain 3  score: 20.1 bits;  conditional E-value: 1.5e-07
                 HHHHHHHHTTTSSSEEEHHHHHHHHHH CS
   EF-hand_1   2 lkeiFrefDkDgdGkIdfeEfkellkk 28 
                 ++ +Fr +D Dg+G+I++ E+ +ll++
  KOO21622.1 100 VDLLFRQIDADGSGTIEYRELNKLLRH 126
                 6779******************99986 PP

>> EF-hand_6  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   0.1   1.6e-06    0.0033       9      27 ..       5      23 ..       3      29 .. 0.93
   2 !   23.4   0.1   1.7e-08   3.4e-05       2      31 .]      64      92 ..      63      92 .. 0.92
   3 !   20.4   0.0   1.6e-07   0.00031       5      28 ..     103     126 ..      99     134 .. 0.91

  Alignments for each domain:
  == domain 1  score: 17.2 bits;  conditional E-value: 1.6e-06
   EF-hand_6  9 fDkdgdGkidaeElrkalr 27
                fD+dgdG+id  E+r ++r
  KOO21622.1  5 FDVDGDGEIDLMEFRIMMR 23
                9*****************9 PP

  == domain 2  score: 23.4 bits;  conditional E-value: 1.7e-08
   EF-hand_6  2 lreaFklfDkdgdGkidaeElrkalrkalg 31
                + e F+++D+dg+G+i  +E+ +a+r +lg
  KOO21622.1 64 VFETFRKIDVDGSGEIEVDEFSDAMR-LLG 92
                5789**********************.887 PP

  == domain 3  score: 20.4 bits;  conditional E-value: 1.6e-07
   EF-hand_6   5 aFklfDkdgdGkidaeElrkalrk 28 
                 +F+++D dg+G+i + El k+lr+
  KOO21622.1 103 LFRQIDADGSGTIEYRELNKLLRH 126
                 8*********************95 PP

>> EF-hand_5  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   1.0   3.4e-06    0.0068       8      24 ..       5      21 ..       2      22 .. 0.89
   2 !   21.3   0.5   6.4e-08   0.00013       4      22 ..      67      85 ..      65      90 .. 0.91
   3 !   21.9   0.0   4.1e-08   8.1e-05       3      24 ..     101     123 ..     100     124 .. 0.89

  Alignments for each domain:
  == domain 1  score: 15.9 bits;  conditional E-value: 3.4e-06
                H-SS-SSCE-HHHHHHH CS
   EF-hand_5  8 iDlNgDGkIskeELktl 24
                +D++gDG I+  E++ +
  KOO21622.1  5 FDVDGDGEIDLMEFRIM 21
                9*************966 PP

  == domain 2  score: 21.3 bits;  conditional E-value: 6.4e-08
                HHHHH-SS-SSCE-HHHHH CS
   EF-hand_5  4 tFqaiDlNgDGkIskeELk 22
                tF++iD++g+G I ++E+ 
  KOO21622.1 67 TFRKIDVDGSGEIEVDEFS 85
                8*****************6 PP

  == domain 3  score: 21.9 bits;  conditional E-value: 4.1e-08
                 H.HHHHH-SS-SSCE-HHHHHHH CS
   EF-hand_5   3 d.tFqaiDlNgDGkIskeELktl 24 
                 d +F++iD++g+G+I   EL +l
  KOO21622.1 101 DlLFRQIDADGSGTIEYRELNKL 123
                 448*****************997 PP

>> EF-hand_8  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.6   1.1    0.0002      0.39      32      53 ..       2      23 ..       1      25 [. 0.86
   2 !   42.6   0.2     2e-14     4e-11       2      51 ..      76     123 ..      75     127 .. 0.92

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.0002
   EF-hand_8 32 frefDtdgdGkisfeEFcvlle 53
                +  fD dgdG i+++EF  ++ 
  KOO21622.1  2 IADFDVDGDGEIDLMEFRIMMR 23
                5569*************99986 PP

  == domain 2  score: 42.6 bits;  conditional E-value: 2e-14
   EF-hand_8   2 kgkItreelrrilrilglkkglseeevdilfrefDtdgdGkisfeEFcvl 51 
                 +g+I ++e+++++r+lgl+  ls+e+vd lfr +D dg+G+i + E   l
  KOO21622.1  76 SGEIEVDEFSDAMRLLGLR--LSDEDVDLLFRQIDADGSGTIEYRELNKL 123
                 79*****************..*********************99887555 PP

>> EF-hand_7  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.9   0.5   0.00023      0.47      50      71 .]       2      23 ..       1      23 [. 0.91
   2 !   37.3   1.7   1.4e-12   2.8e-09       4      70 ..      64     124 ..      61     125 .. 0.94

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00023
   EF-hand_7 50 fkefDtdkdGvisfdEFlklyr 71
                + +fD d+dG+i++ EF+ ++r
  KOO21622.1  2 IADFDVDGDGEIDLMEFRIMMR 23
                679***************9996 PP

  == domain 2  score: 37.3 bits;  conditional E-value: 1.4e-12
   EF-hand_7   4 lkeaFkelDtdgdgyldkeellrllrkifqgagegsklsdeelellfkefDtdkdGvisfdEFlkly 70 
                 ++e F+++D+dg+g ++++e+ +++r        g  lsde ++llf+ +D d++G+i + E+ kl 
  KOO21622.1  64 VFETFRKIDVDGSGEIEVDEFSDAMR------LLGLRLSDEDVDLLFRQIDADGSGTIEYRELNKLL 124
                 6789**********************......******************************99876 PP

>> Acyltransf_C  Acyltransferase C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.9   0.0       7.6   1.5e+04       9      19 ..     209     219 ..     207     221 .. 0.82
   2 !   15.6   0.0   6.3e-06     0.012      25      55 ..     503     534 ..     482     553 .. 0.73

  Alignments for each domain:
  == domain 1  score: -3.9 bits;  conditional E-value: 7.6
  Acyltransf_C   9 evhiyvrripl 19 
                    v++++rri l
    KOO21622.1 209 SVDVLMRRIRL 219
                   6899****976 PP

  == domain 2  score: 15.6 bits;  conditional E-value: 6.3e-06
  Acyltransf_C  25 deeelaeWlhelfeeKDklleeFyk.tgtFep 55 
                   +++++a Wl++++ eKDk+l+ +++   ++++
    KOO21622.1 503 KQNDIAVWLEDIWAEKDKALHAWKRdPACWFE 534
                   3799****************999874455555 PP

>> EF-hand_4  Cytoskeletal-regulatory complex EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.1   0.4   0.00061       1.2      53      71 ..       6      24 ..       2      36 .. 0.93
   2 ?    6.1   0.2    0.0054        11      51      72 ..      70      91 ..      38     101 .. 0.85
   3 ?   -3.5   0.0       5.1     1e+04      33      51 ..     376     394 ..     371     396 .. 0.77

  Alignments for each domain:
  == domain 1  score: 9.1 bits;  conditional E-value: 0.00061
   EF-hand_4 53 didedgkldfeefciamrl 71
                d+d dg++d+ ef i+mr 
  KOO21622.1  6 DVDGDGEIDLMEFRIMMRA 24
                9****************95 PP

  == domain 2  score: 6.1 bits;  conditional E-value: 0.0054
   EF-hand_4 51 ladidedgkldfeefciamrli 72
                  d+d  g+++ +ef  amrl+
  KOO21622.1 70 KIDVDGSGEIEVDEFSDAMRLL 91
                4699****************96 PP

  == domain 3  score: -3.5 bits;  conditional E-value: 5.1
   EF-hand_4  33 pvlknskleedklekiwdl 51 
                 ++ k+sk+  + l+ +w++
  KOO21622.1 376 GIAKKSKVIPKTLDPVWNV 394
                 6778888888888888875 PP

>> EF-hand_9  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.3   0.1      0.69   1.4e+03      44      63 ..       5      23 ..       2      30 .. 0.78
   2 ?    8.2   0.0    0.0016       3.2       3      54 ..      67     116 ..      66     127 .. 0.88
   3 ?   -1.6   0.0       1.8   3.5e+03      13      48 ..     312     344 ..     304     351 .. 0.67

  Alignments for each domain:
  == domain 1  score: -0.3 bits;  conditional E-value: 0.69
   EF-hand_9 44 lDPdgedasvdldtflrvmr 63
                +D dg  +++dl  f  +mr
  KOO21622.1  5 FDVDGD-GEIDLMEFRIMMR 23
                555665.8899999988887 PP

  == domain 2  score: 8.2 bits;  conditional E-value: 0.0016
   EF-hand_9   3 vFevcDtqktGrVpvsrlidyLravtaqdpeeseLeelakelDPdgedasvd 54 
                 +F+  D++  G++ v +  d +r  +    ++ +++ l +++D dg  ++++
  KOO21622.1  67 TFRKIDVDGSGEIEVDEFSDAMRLLGL-RLSDEDVDLLFRQIDADGS-GTIE 116
                 69999**********************.788899**********999.7776 PP

  == domain 3  score: -1.6 bits;  conditional E-value: 1.8
   EF-hand_9  13 GrVpvsrlidyLravtaqdpees..eLeelakelDPdg 48 
                 G+V+vs  +dyL   ++qd      +++     lDP  
  KOO21622.1 312 GEVKVS--LDYLILGGQQD---FveRVQPVNGTLDPSQ 344
                 677776..67887777733...3337888888888876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (578 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       485  (0.0270511); expected 358.6 (0.02)
Passed bias filter:                      446  (0.0248759); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.55u 0.28s 00:00:00.83 Elapsed: 00:00:00.43
# Mc/sec: 4005.57
//
Query:       KOO21623.1  [L=528]
Description: hypothetical protein Ctob_001784 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      2e-24   86.0   0.6    6.6e-14   52.3   0.4    2.5  2  Ank_2     Ankyrin repeats (3 copies)
      2e-23   82.4   4.7    3.4e-08   33.9   0.0    3.5  4  Ank_4     Ankyrin repeats (many copies)
    2.5e-19   69.0   2.9    5.2e-07   29.8   0.0    4.6  4  Ank_5     Ankyrin repeats (many copies)
    1.7e-14   53.5   2.7      0.026   15.0   0.2    5.3  5  Ank       Ankyrin repeat
    2.6e-10   39.6   0.4       0.67   10.7   0.1    5.7  5  Ank_3     Ankyrin repeat
  ------ inclusion threshold ------
       0.22   11.3   3.5        0.5   10.2   3.5    1.6  1  VIT1      VIT family


Domain annotation for each model (and alignments):
>> Ank_2  Ankyrin repeats (3 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.3   0.4   2.2e-17   6.6e-14       2      82 ..      76     166 ..      75     167 .. 0.89
   2 !   33.1   0.0   2.1e-11   6.1e-08      22      78 ..     163     228 ..     161     233 .. 0.81

  Alignments for each domain:
  == domain 1  score: 52.3 bits;  conditional E-value: 2.2e-17
       Ank_2   2 hlAakngnlelvklLl.egadpn.k..ngktaLhyAakngnleivklLleh...ad...ndgrtpLhyAarsghleivklLlekgadinlk 82 
                   Aa++gnl+++ +L+  g+d+n +  ng++aL +A+ ng+ ++  lL+++   a+   + g+ pLh+Aa+ ++l+++++L++  ad++lk
  KOO21623.1  76 CDAAEQGNLPVLTQLVsTGTDVNmTgeNGNSALAFACANGHADCTALLISKgaqANqrsSLGNAPLHAAAWADSLKCIRILVDAQADVDLK 166
                 6799***9********9******8356**********************977774455677*********99**********9999*9987 PP

  == domain 2  score: 33.1 bits;  conditional E-value: 2.1e-11
       Ank_2  22 pn.k..ngktaLhyAakngnleivklLleh......adndgrtpLhyAarsghleivklLlekgad 78 
                 ++ k   g t+Lh+A+++g + ++ +Ll++       d +g+tp+++A + gh+e+v +L ++ a+
  KOO21623.1 163 VDlKsfSGATPLHVAIQGGREAALAALLSFgasrtlKDGNGKTPMQLALSMGHTECVSVLKQSQAE 228
                 55533789***********98889****977766655588*********99*********876665 PP

>> Ank_4  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.6   0.0     6e-11   1.8e-07       2      55 .]      72     124 ..      72     124 .. 0.96
   2 !   14.9   0.1     1e-05      0.03      15      54 ..     118     156 ..     118     157 .. 0.93
   3 !   25.0   0.1   6.8e-09     2e-05       2      55 .]     138     190 ..     137     190 .. 0.93
   4 !   33.9   0.0   1.1e-11   3.4e-08       3      54 ..     172     222 ..     170     222 .. 0.94

  Alignments for each domain:
  == domain 1  score: 31.6 bits;  conditional E-value: 6e-11
       Ank_4   2 ltaLhyaaisgrlelvrlLlekgadinaqdnrsGetalhiAakrgnveilklLl 55 
                 + +L  aa++g+l+++  L+++g d+n++  ++G++al +A+ +g+ +++ lL+
  KOO21623.1  72 MNPLCDAAEQGNLPVLTQLVSTGTDVNMT-GENGNSALAFACANGHADCTALLI 124
                 56899************************.********************9997 PP

  == domain 2  score: 14.9 bits;  conditional E-value: 1e-05
       Ank_4  15 elvrlLlekgadinaqdnrsGetalhiAakrgnveilklL 54 
                 ++ +lL++kga+ n + ++ G+ +lh Aa+  ++++++ L
  KOO21623.1 118 DCTALLISKGAQANQR-SSLGNAPLHAAAWADSLKCIRIL 156
                 5789************.999****************9988 PP

  == domain 3  score: 25.0 bits;  conditional E-value: 6.8e-09
       Ank_4   2 ltaLhyaaisgrlelvrlLlekgadinaqdnrsGetalhiAakrgnveilklLl 55 
                 + +Lh+aa +  l+++r+L++  ad++   + sG t+lh A+++g+  +l  Ll
  KOO21623.1 138 NAPLHAAAWADSLKCIRILVDAQADVDLK-SFSGATPLHVAIQGGREAALAALL 190
                 569*************************9.778**************9999887 PP

  == domain 4  score: 33.9 bits;  conditional E-value: 1.1e-11
       Ank_4   3 taLhyaaisgrlelvrlLlekgadinaq.dnrsGetalhiAakrgnveilklL 54 
                 t+Lh a++ gr+ +++ Ll++ga+  ++ ++++G t+++ A+++g+ e++  L
  KOO21623.1 172 TPLHVAIQGGREAALAALLSFGAS--RTlKDGNGKTPMQLALSMGHTECVSVL 222
                 89*********************9..6668********************987 PP

>> Ank_5  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.9   0.0      0.05   1.5e+02      17      31 ..      72      86 ..      68      88 .. 0.90
   2 !   24.7   0.4   6.9e-09   2.1e-05       2      54 ..      91     142 ..      90     144 .. 0.93
   3 !   29.3   0.1   2.6e-10   7.7e-07       1      56 []     123     177 ..     123     177 .. 0.96
   4 !   29.8   0.0   1.7e-10   5.2e-07       1      56 []     156     210 ..     156     210 .. 0.95

  Alignments for each domain:
  == domain 1  score: 2.9 bits;  conditional E-value: 0.05
       Ank_5 17 ntpLhvAakygaadv 31
                ++pL+ Aa++g+++v
  KOO21623.1 72 MNPLCDAAEQGNLPV 86
                69**********987 PP

  == domain 2  score: 24.7 bits;  conditional E-value: 6.9e-09
       Ank_5   2 lehgpadvnrldgggntpLhvAakygaadvvrlLlargadlnltdsrGltald 54 
                 ++ g  dvn + ++gn++L +A+ +g+ad+  lL+  ga +n++ s G+ +l+
  KOO21623.1  91 VSTG-TDVNMTGENGNSALAFACANGHADCTALLISKGAQANQRSSLGNAPLH 142
                 5566.79********************************************97 PP

  == domain 3  score: 29.3 bits;  conditional E-value: 2.6e-10
       Ank_5   1 LlehgpadvnrldgggntpLhvAakygaadvvrlLlargadlnltdsrGltaldlA 56 
                 L+++g a+ n +   gn pLh Aa++ ++ ++r+L++ +ad +l+ ++G t+l++A
  KOO21623.1 123 LISKG-AQANQRSSLGNAPLHAAAWADSLKCIRILVDAQADVDLKSFSGATPLHVA 177
                 67888.999999999***************************************98 PP

  == domain 4  score: 29.8 bits;  conditional E-value: 1.7e-10
       Ank_5   1 LlehgpadvnrldgggntpLhvAakygaadvvrlLlargadlnltdsrGltaldlA 56 
                 L++++ adv+ +   g tpLhvA+ +g+   +  Ll +ga+++l+d++G+t+++lA
  KOO21623.1 156 LVDAQ-ADVDLKSFSGATPLHVAIQGGREAALAALLSFGASRTLKDGNGKTPMQLA 210
                 67777.9********************999999999******************99 PP

>> Ank  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.1   0.0       0.5   1.5e+03       5      30 ..      74     100 ..      72     101 .. 0.81
   2 !   15.0   0.2   8.6e-06     0.026       1      29 [.     103     132 ..     103     135 .. 0.88
   3 !   14.6   0.0   1.1e-05     0.034       2      30 ..     137     166 ..     136     168 .. 0.87
   4 !   12.7   0.0   4.5e-05      0.13       2      31 ..     170     200 ..     169     200 .. 0.85
   5 !    6.2   0.0    0.0053        16       1      21 [.     202     222 ..     202     232 .. 0.88

  Alignments for each domain:
  == domain 1  score: -0.1 bits;  conditional E-value: 0.5
                 HHHHHHHHTTHHHHHHHH.TTTSTTCB CS
         Ank   5 PLHlAatngkkriiklLL.hGAnlnal 30 
                 PL  Aa  g++ ++  L+  G ++n++
  KOO21623.1  74 PLCDAAEQGNLPVLTQLVsTGTDVNMT 100
                 6677888899999999**7799*9975 PP

  == domain 2  score: 15.0 bits;  conditional E-value: 8.6e-06
                 TSBBHHHHHHHHTTHHHHHHHH.TTTSTTC CS
         Ank   1 dGnTPLHlAatngkkriiklLL.hGAnlna 29 
                 +Gn++L  A+ ng+++++ lL+ +GA  n+
  KOO21623.1 103 NGNSALAFACANGHADCTALLIsKGAQANQ 132
                 7*********************88986555 PP

  == domain 3  score: 14.6 bits;  conditional E-value: 1.1e-05
                 SBBHHHHHHHHTTHHHHHHHH.TTTSTTCB CS
         Ank   2 GnTPLHlAatngkkriiklLL.hGAnlnal 30 
                 Gn PLH Aa+ +++ +i+ L+   A+++++
  KOO21623.1 137 GNAPLHAAAWADSLKCIRILVdAQADVDLK 166
                 899******999999******446999976 PP

  == domain 4  score: 12.7 bits;  conditional E-value: 4.5e-05
                 SBBHHHHHHHHTTHHHHHHHH.TTTSTTCBT CS
         Ank   2 GnTPLHlAatngkkriiklLL.hGAnlnald 31 
                 G TPLH+A+++g +  + +LL  GA+ +++d
  KOO21623.1 170 GATPLHVAIQGGREAALAALLsFGASRTLKD 200
                 88*******9999999999**6699977766 PP

  == domain 5  score: 6.2 bits;  conditional E-value: 0.0053
                 TSBBHHHHHHHHTTHHHHHHH CS
         Ank   1 dGnTPLHlAatngkkriiklL 21 
                 +G TP  lA + g++++++ L
  KOO21623.1 202 NGKTPMQLALSMGHTECVSVL 222
                 7********999*******98 PP

>> Ank_3  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.5   0.0      0.23   6.8e+02       9      30 ..      78      98 ..      78      99 .. 0.93
   2 !   10.7   0.1   0.00022      0.67       1      30 [.     103     131 ..     103     132 .. 0.85
   3 ?    4.1   0.1     0.031        92       2      30 ..     137     164 ..     136     165 .. 0.91
   4 !    9.8   0.0   0.00044       1.3       2      27 ..     170     194 ..     169     196 .. 0.92
   5 !    6.0   0.0    0.0076        23       1      21 [.     202     222 ..     202     228 .. 0.87

  Alignments for each domain:
  == domain 1  score: 1.5 bits;  conditional E-value: 0.23
       Ank_3  9 AarsgnleivkfLlenkgadvn 30
                Aa++gnl+++  L+   g dvn
  KOO21623.1 78 AAEQGNLPVLTQLVS-TGTDVN 98
                899************.8****9 PP

  == domain 2  score: 10.7 bits;  conditional E-value: 0.00022
       Ank_3   1 nGetpLhlAarsgnleivkfLlenkgadvn 30 
                 nG+++L +A+ +g+ +   +L+  kga  n
  KOO21623.1 103 NGNSALAFACANGHADCTALLIS-KGAQAN 131
                 7***************7777777.898776 PP

  == domain 3  score: 4.1 bits;  conditional E-value: 0.031
       Ank_3   2 GetpLhlAarsgnleivkfLlenkgadvn 30 
                 G+ pLh Aa +++l+ ++ L++   adv+
  KOO21623.1 137 GNAPLHAAAWADSLKCIRILVD-AQADVD 164
                 889***********99******.899997 PP

  == domain 4  score: 9.8 bits;  conditional E-value: 0.00044
       Ank_3   2 GetpLhlAarsgnleivkfLlenkga 27 
                 G tpLh+A+  g+ + + +Ll  +ga
  KOO21623.1 170 GATPLHVAIQGGREAALAALLS-FGA 194
                 89************99*****9.887 PP

  == domain 5  score: 6.0 bits;  conditional E-value: 0.0076
       Ank_3   1 nGetpLhlAarsgnleivkfL 21 
                 nG tp+ lA++ g++e v  L
  KOO21623.1 202 NGKTPMQLALSMGHTECVSVL 222
                 79*************988777 PP

>> VIT1  VIT family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   3.5   0.00017       0.5      45     118 ..     210     286 ..     209     356 .. 0.60

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.00017
        VIT1  45 aiSMgiGeYlsvkserdlekaerkreeeeleedpe.egeaeelaeilearglseelaqevaaellk..npdallelm 118
                 a+SMg  e +sv ++++ e++ r+r +   e++ + ++  +  +++l++++l+e+ +    ++  k  +++a ++++
  KOO21623.1 210 ALSMGHTECVSVLKQSQAESEARERVRLCAEREVAeKRANAAAEALLRELELEEAASSGTQSKSGKasKKKAAKKAA 286
                 89**************9999998887776666666444445567888888776665544333332211222222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (528 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1069  (0.0596241); expected 358.6 (0.02)
Passed bias filter:                      537  (0.0299515); expected 358.6 (0.02)
Passed Vit filter:                        51  (0.00284455); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.58u 0.28s 00:00:00.86 Elapsed: 00:00:00.42
# Mc/sec: 3750.54
//
Query:       KOO21624.1  [L=317]
Description: e3 ubiquitin-protein ligase keg [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.015   15.6   2.1      0.077   13.3   2.1    1.9  1  SH3_15    Mind bomb SH3 repeat domain
      0.042   13.4   8.1        0.1   12.2   8.1    1.6  1  PT        PT repeat


Domain annotation for each model (and alignments):
>> SH3_15  Mind bomb SH3 repeat domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   2.1   8.6e-06     0.077       1      59 [.      48      96 ..      48     101 .. 0.77

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 8.6e-06
      SH3_15  1 fevGDwVrvkddvekvkklqeghggWsgamtlgsvGtVlkvdadgd.lrVkfpgegraWt 59
                ++vGD+Vrv++    +        gW +    +svG+V+++d  g+ + V+fpg+++ W 
  KOO21624.1 48 LKVGDRVRVRP--GVIP-----SLGWGNVR-STSVGRVVRMD--GErCDVDFPGHNN-WH 96
                68999999999..3333.....239*6666.*********86..555*****99888.86 PP

>> PT  PT repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   8.1   1.1e-05       0.1       5      31 ..     290     314 ..     287     316 .. 0.48

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 1.1e-05
          PT   5 qPtaqPTvqPTgqPtaqPTdqPtaqPt 31 
                 +Pt  PT +PT +Pt  PT++  aqP+
  KOO21624.1 290 APTMAPTMAPTMAPTMAPTAP--AQPS 314
                 455555555555555555543..3444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (317 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       440  (0.0245412); expected 358.6 (0.02)
Passed bias filter:                      304  (0.0169558); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.43u 0.25s 00:00:00.68 Elapsed: 00:00:00.40
# Mc/sec: 2369.49
//
Query:       KOO21625.1  [L=1049]
Description: hypothetical protein Ctob_001779 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.11   12.4   0.1       0.31   10.9   0.1    1.8  1  EF-hand_8  EF-hand domain pair


Domain annotation for each model (and alignments):
>> EF-hand_8  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.1   1.7e-05      0.31       2      44 ..     332     372 ..     331     374 .. 0.91

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 1.7e-05
   EF-hand_8   2 kgkItreelrrilrilglkkglseeevdilfrefDtdgdGkis 44 
                 +g++ r ++r  +++lg k  l e+evd lf  +D dg G+++
  KOO21625.1 332 RGEVGRLDFRLGIKALGVK--LDEKEVDRLFGSLDADGTGALD 372
                 68999999***88888888..*******************997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1049 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       857  (0.0477997); expected 358.6 (0.02)
Passed bias filter:                      427  (0.0238162); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.74u 0.28s 00:00:01.02 Elapsed: 00:00:00.42
# Mc/sec: 7464.40
//
Query:       KOO21626.1  [L=293]
Description: calcium dependent mitochondrial carrier protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.8e-08   34.7   0.0     0.0099   16.3   0.1    2.6  2  EF-hand_7  EF-hand domain pair
    8.1e-05   22.4   0.0       0.11   12.3   0.0    2.8  3  EF-hand_8  EF-hand domain pair
    0.00051   19.8   0.1       0.27   11.2   0.0    4.1  5  EF-hand_6  EF-hand domain
  ------ inclusion threshold ------
        0.1   12.9   0.0        7.8    6.9   0.0    2.3  2  EF-hand_9  EF-hand domain
       0.11   12.1   0.3         17    5.3   0.1    3.6  4  EF-hand_1  EF hand


Domain annotation for each model (and alignments):
>> EF-hand_7  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.0   4.3e-06     0.015       3      65 ..      63     126 ..      61     131 .. 0.81
   2 !   16.3   0.1   2.8e-06    0.0099       2      50 ..     177     220 ..     176     248 .. 0.71

  Alignments for each domain:
  == domain 1  score: 15.7 bits;  conditional E-value: 4.3e-06
   EF-hand_7   3 klkeaFkelDtdgdgyldkeellrllrkifqgagegsklsdeelellfkefDtdkdG..visfdE 65 
                 +l e+F + D++ +g++ +e + + l +i +  g  ++ +   +e+++++fD ++dG  +i +dE
  KOO21626.1  63 ALAEVFASADRNLSGWVAREAVYDWLVAIAERVGIHDV-TARTIEAVIDDFDPSGDGkdQIRYDE 126
                 6899*****************66677766554466666.4457*************988899888 PP

  == domain 2  score: 16.3 bits;  conditional E-value: 2.8e-06
   EF-hand_7   2 eklkeaFkelDtdgdgyldkeellrllrkifqgagegsklsdeelellf 50 
                 e l ++F+e+D  ++g+l++eel+  l k+    g + k+ + el +++
  KOO21626.1 177 ELLDCVFDEMDLERTGWLRYEELQAKL-KL----GSAAKPASAELLDVL 220
                 568899******************544.44....333333444443333 PP

>> EF-hand_8  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.0       2.1   7.4e+03       3      12 ..       5      14 ..       4      19 .. 0.81
   2 !    6.9   0.0    0.0015       5.4      11      42 ..      89     119 ..      86     119 .. 0.86
   3 !   12.3   0.0   3.2e-05      0.11       2      47 ..     155     198 ..     154     201 .. 0.92

  Alignments for each domain:
  == domain 1  score: -3.1 bits;  conditional E-value: 2.1
   EF-hand_8  3 gkItreelrr 12
                g +t +e+++
  KOO21626.1  5 GLLTAHEFSM 14
                7789999986 PP

  == domain 2  score: 6.9 bits;  conditional E-value: 0.0015
   EF-hand_8  11 rrilrilglkkglseeevdilfrefDtdgdGk 42 
                 + i+  +g+++ +++  ++++++ fD  gdGk
  KOO21626.1  89 VAIAERVGIHD-VTARTIEAVIDDFDPSGDGK 119
                 56775559997.*******************7 PP

  == domain 3  score: 12.3 bits;  conditional E-value: 3.2e-05
   EF-hand_8   2 kgkItreelrril.rilglkkglseeevdilfrefDtdgdGkisfeE 47 
                 kg ++++ lr+++ +  gl+   s e +d++f+e+D+++ G + +eE
  KOO21626.1 155 KGGVDKALLRHAIcAF-GLP--ASRELLDCVFDEMDLERTGWLRYEE 198
                 8999*********665.***..*******************999998 PP

>> EF-hand_6  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   0.0       3.8   1.4e+04      15      22 ..       5      12 ..       5      13 .. 0.87
   2 ?   -0.7   0.0      0.51   1.8e+03       2      19 ..      64      81 ..      63      89 .. 0.77
   3 ?    2.2   0.1     0.061   2.2e+02       7      22 ..     110     127 ..     104     138 .. 0.72
   4 ?   -0.3   0.0      0.39   1.4e+03      10      26 ..     151     167 ..     142     171 .. 0.80
   5 !   11.2   0.0   7.7e-05      0.27       2      27 ..     179     204 ..     178     207 .. 0.87

  Alignments for each domain:
  == domain 1  score: -3.4 bits;  conditional E-value: 3.8
   EF-hand_6 15 GkidaeEl 22
                G ++a+E+
  KOO21626.1  5 GLLTAHEF 12
                789***98 PP

  == domain 2  score: -0.7 bits;  conditional E-value: 0.51
   EF-hand_6  2 lreaFklfDkdgdGkida 19
                l e+F   D++ +G + +
  KOO21626.1 64 LAEVFASADRNLSGWVAR 81
                5689******99998765 PP

  == domain 3  score: 2.2 bits;  conditional E-value: 0.061
   EF-hand_6   7 klfDkdgdG..kidaeEl 22 
                 + fD +gdG  +i ++E+
  KOO21626.1 110 DDFDPSGDGkdQIRYDEW 127
                 679999999778888777 PP

  == domain 4  score: -0.3 bits;  conditional E-value: 0.39
   EF-hand_6  10 DkdgdGkidaeElrkal 26 
                 D++g G +d++ lr+a+
  KOO21626.1 151 DREGKGGVDKALLRHAI 167
                 99999*99999888876 PP

  == domain 5  score: 11.2 bits;  conditional E-value: 7.7e-05
   EF-hand_6   2 lreaFklfDkdgdGkidaeElrkalr 27 
                 l+ +F+++D +++G + +eEl++ l+
  KOO21626.1 179 LDCVFDEMDLERTGWLRYEELQAKLK 204
                 5679*****************98666 PP

>> EF-hand_9  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.9   0.0    0.0022       7.8       3      61 ..      67     130 ..      65     135 .. 0.81
   2 ?    3.8   0.0     0.021        75       1      37 [.     180     216 ..     180     231 .. 0.85

  Alignments for each domain:
  == domain 1  score: 6.9 bits;  conditional E-value: 0.0022
   EF-hand_9   3 vFevcDtqktGrVpvsrlidyLravtaq.dpees...eLeelakelDPdge.dasvdldtflrv 61 
                 vF   D++  G V+   + d L a +++   +++    +e     +DP g  ++++  d + r 
  KOO21626.1  67 VFASADRNLSGWVAREAVYDWLVAIAERvGIHDVtarTIEAVIDDFDPSGDgKDQIRYDEWTRL 130
                 67888999999999999999999999887445555559***********998899999998874 PP

  == domain 2  score: 3.8 bits;  conditional E-value: 0.021
   EF-hand_9   1 etvFevcDtqktGrVpvsrlidyLravtaqdpeeseL 37 
                 ++vF+  D ++tG  +  +l + L+   a +p  +eL
  KOO21626.1 180 DCVFDEMDLERTGWLRYEELQAKLKLGSAAKPASAEL 216
                 79******************99999988878777765 PP

>> EF-hand_1  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.5   0.0      0.32   1.1e+03       2      15 ..      64      77 ..      63      77 .. 0.83
   2 ?    5.3   0.1    0.0047        17       2      16 ..     105     119 ..     104     119 .. 0.91
   3 ?   -3.1   0.0       2.3   8.2e+03      10      19 ..     151     160 ..     146     161 .. 0.75
   4 ?    2.0   0.0     0.051   1.8e+02       2      21 ..     179     198 ..     178     201 .. 0.76

  Alignments for each domain:
  == domain 1  score: -0.5 bits;  conditional E-value: 0.32
                HHHHHHHHTTTSSS CS
   EF-hand_1  2 lkeiFrefDkDgdG 15
                l e+F+ +D++ +G
  KOO21626.1 64 LAEVFASADRNLSG 77
                5699******9776 PP

  == domain 2  score: 5.3 bits;  conditional E-value: 0.0047
                 HHHHHHHHTTTSSSE CS
   EF-hand_1   2 lkeiFrefDkDgdGk 16 
                 ++ ++++fD  gdGk
  KOO21626.1 105 IEAVIDDFDPSGDGK 119
                 7889**********7 PP

  == domain 3  score: -3.1 bits;  conditional E-value: 2.3
                 TTTSSSEEEH CS
   EF-hand_1  10 DkDgdGkIdf 19 
                 D+ g G +d+
  KOO21626.1 151 DREGKGGVDK 160
                 9999998885 PP

  == domain 4  score: 2.0 bits;  conditional E-value: 0.051
                 HHHHHHHHTTTSSSEEEHHH CS
   EF-hand_1   2 lkeiFrefDkDgdGkIdfeE 21 
                 l+ +F+e+D  ++G + +eE
  KOO21626.1 179 LDCVFDEMDLERTGWLRYEE 198
                 6779******9999555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (293 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       454  (0.0253221); expected 358.6 (0.02)
Passed bias filter:                      359  (0.0200234); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.41u 0.24s 00:00:00.64 Elapsed: 00:00:00.38
# Mc/sec: 2321.55
//
Query:       KOO21627.1  [L=179]
Description: amino acid transporter [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.1e-10   40.8   8.7    1.3e-10   40.6   8.7    1.1  1  Aa_trans  Transmembrane amino acid transporter protein
  ------ inclusion threshold ------
      0.022   14.4   0.5      0.027   14.1   0.5    1.2  1  Ilm1      Increased loss of mitochondrial DNA protein 1


Domain annotation for each model (and alignments):
>> Aa_trans  Transmembrane amino acid transporter protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.6   8.7   1.5e-14   1.3e-10     221     407 ..       6     172 ..       1     174 [. 0.82

  Alignments for each domain:
  == domain 1  score: 40.6 bits;  conditional E-value: 1.5e-14
    Aa_trans 221 pskfkkmtkvlllsiilatvlyilvGlvGYltFGnevkgnillnlpkssilivivnlllvlhlilsfplqlhplrqvvenllikkeavagasekeapks 319
                 p+ f   +k+++ s++++t +y++      lt G +v + il+n++    + +++ +++++hl+++   +  pl q+++                    
  KOO21627.1   6 PARF---RKAIVGSFAACTSMYLASSIGSVLTLGGAVGSDILTNFSGP--IDTFGLIAVTVHLLFAAVTVHIPLGQIMDHYAGA------------ADY 87 
                 4444...59************************************987..6****************************99954............344 PP

    Aa_trans 320 kllrlvirlllvvityliA.lsvpslakvlslvGatsstplsfilPalfhlkliktekksleklvkkkildlicivlglllvfyglavl 407
                 + +++ ir+l + ++ l+  ++ +++  v++lvG t+   ++fi+P++f+lkl+ +   +   ++ +   +++++ +g + ++  l+++
  KOO21627.1  88 SAQQVAIRALTMGCVALMIwAIGTHFFCVMGLVGGTCNNAMIFIFPPWFYLKLMPPAERTPAAIA-R---MVVIMAMGTAGMASALIGA 172
                 4556677777776666665466688889***************************9974444443.3...5788888888888877765 PP

>> Ilm1  Increased loss of mitochondrial DNA protein 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   0.5     3e-06     0.027      32     110 ..      30     112 ..      13     169 .. 0.84

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 3e-06
        Ilm1  32 elvyllgealridaarsfskpssplAflgvl..LlvlalvDlvll..slneelavaeywgrqaplRlllffivslyiYlsses 110
                   v+ lg a++ d  ++fs p  ++ +++v   Ll+ a++  + l   +++   +a+y ++q+++R+l + +v+l+i++  ++
  KOO21627.1  30 GSVLTLGGAVGSDILTNFSGPIDTFGLIAVTvhLLFAAVTVHIPLgqIMDHYAGAADYSAQQVAIRALTMGCVALMIWAIGTH 112
                 568999*********************9986336777777777779999999*************************997764 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (179 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       568  (0.0316805); expected 358.6 (0.02)
Passed bias filter:                      248  (0.0138323); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.37u 0.27s 00:00:00.64 Elapsed: 00:00:00.40
# Mc/sec: 1335.29
//
Query:       KOO21628.1  [L=1155]
Description: subtilisin like protease [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    7.9e-21   74.6  13.1      3e-18   66.1  13.1    3.2  1  Peptidase_S8  Subtilase family


Domain annotation for each model (and alignments):
>> Peptidase_S8  Subtilase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.1  13.1   1.7e-22     3e-18       1     271 [.     833    1139 ..     833    1143 .. 0.70

  Alignments for each domain:
  == domain 1  score: 66.1 bits;  conditional E-value: 1.7e-22
                    -TT-EEEEECS-B-TT-TTTGGGEEE..EEEE---TTSG.GGEETT-SS-TT-SC-SSS....HHHHHHHHHH-B..SSSSSB-SSTTSEEEEEE CS
                    xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Peptidase_S8    1 gkgvlvavlDtGvdpshpdlsvttdgerklvdvideegagfngadsettstnwarddngnsieHGthvAGiaaanapeegekngvapgakilsvk 95  
                    g gv++ ++D+G d +hpd+s                    ++ d+    + +++        HGt vA ia+a   +++++ gva+ga++ +  
    KOO21628.1  833 GAGVTINIVDDGPDETHPDFS--------------------GKYDALGSCPTHTTGS------HGTTVAAIALAA-GNDQCSRGVAYGATLSKCG 900 
                    68999**************99....................4455555566666655......***********9.8999************666 PP

                    -SSTTSB-HH..HHHHHHHHHHHHCT-S.............................................................EEEE-E CS
                    xxxxxxxxxxxxxxxxxxxxxxxxxxxx.............................................................xxxxxx RF
  Peptidase_S8   96 vldtsggsmetgteliraieeaaedkvd.............................................................vinmsl 129 
                    + ++  ++m    +++r+ + ++  ++d                                                             v n+  
    KOO21628.1  901 MNGNTVTNML-IGNMARNHISSNSWGIDpctalassgrrklrqrqlqgcpfaataasgtspcsasecpgaswtsplstceavistycqdVSNYDA 994 
                    6666665553.255555544444444444444444444444455555666666666666665555544444444444444433333333333333 PP

                    ESCETTCHHCHHHHHH......................HHHHHH.CCT-EEEEE--SS-T-HHEEE-TTCEECTTTSTTCEEEEEESTTSSB-TT CS
                    xxxxxxxxxxxxxxxx......................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Peptidase_S8  130 gestslpktgrsieal......................ainravnkkgvlvviSaGNngktgsslqagspvgtpstsknvitvgayttegkiapf 202 
                                ++                         + +++  +g+++v+S+GN++ +g+   ++ + +  s ++  itvga+++ g  +++
    KOO21628.1  995 D---------GECASWthlwmtcaythlpwatkrtlqrGVLEGRSGRGIVYVMSSGNENAQGE--DVNMEQYLHSRFT--ITVGATDKLGLHSYY 1076
                    3.........22222244444445556666666666669999999**************9999..9999999999999..*************** PP

                    --B-TT.......-EEEE-S-.CCCCCCCCCHHHTTTHHEEEE-SHHHCHHHHHHHHHHHHHHHTT--HH CS
                    xxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Peptidase_S8  203 SsrGpssdgklkpdivapGgn.ivstwsrqsnnsaglssyqsmsGTSmAsPnaagaaAlllsalpkltpe 271 
                    S +G+s        i+apGg+   ++ s++  ++ g++  ++ +GTS A+P+++g++Al+l+a+p l ++
    KOO21628.1 1077 SVTGSSL------FISAPGGDaTQHSNSWHVAATGGGCA-EQGQGTSYACPVVSGVVALMLQANPLLGWR 1139
                    ******9......6*******877777777777777775.9***********************985554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1155 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       406  (0.0226449); expected 358.6 (0.02)
Passed bias filter:                      252  (0.0140554); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.71u 0.28s 00:00:00.99 Elapsed: 00:00:00.45
# Mc/sec: 7773.80
//
Query:       KOO21629.1  [L=1026]
Description: amine oxidase, partial [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.8e-64  218.1   0.4      5e-64  217.2   0.4    1.5  1  Amino_oxidase  Flavin containing amine oxidoreductase
    1.5e-07   31.5   1.9    3.9e-07   30.2   0.7    2.4  2  NAD_binding_8  NAD(P)-binding Rossmann-like domain
    2.9e-06   27.4   1.6     0.0042   17.1   0.2    2.4  2  NAD_binding_9  FAD-NAD(P)-binding
     0.0039   16.5   0.4     0.0087   15.3   0.4    1.5  1  Thi4           Thi4 family
  ------ inclusion threshold ------
      0.012   14.9   1.3       0.14   11.4   0.1    2.3  2  Pyr_redox_3    Pyridine nucleotide-disulphide oxidoreductase
      0.013   14.8   0.8       0.57    9.4   0.3    2.3  2  Pyr_redox_2    Pyridine nucleotide-disulphide oxidoreductase
      0.018   13.8   0.6        3.9    6.1   0.0    2.2  2  HI0933_like    HI0933-like protein
      0.083   12.5   7.4       0.21   11.1   7.4    1.7  1  DAO            FAD dependent oxidoreductase
       0.31   11.6   0.8        3.8    8.2   0.2    2.3  2  Pyr_redox      Pyridine nucleotide-disulphide oxidoreductase


Domain annotation for each model (and alignments):
>> Amino_oxidase  Flavin containing amine oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  217.2   0.4   2.5e-67     5e-64       2     451 ..      14     512 ..      13     513 .. 0.82

  Alignments for each domain:
  == domain 1  score: 217.2 bits;  conditional E-value: 2.5e-67
                    HHHHHHHHH......HHTT..EEEEEEESSSSSBTTS-EEEET............TEEEESS--EEET..TTHHHHHHHHHTTCCCCEE...EESC CS
  Amino_oxidase   2 aGLaaArqL......lsaG..fdVtvlEardrvGGRirtvrsd............GylielGamwftg..agnpllellkelgledsls...lpdp 72 
                    +GLaaAr+L      +++G  +++tvlEa  r+GGR +t +              G + ++Ga+w++g    +p+++++  lgl +      ++  
     KOO21629.1  14 SGLAAARTLidtwdtAANGghLELTVLEAGTRIGGRTWTLNAAeagtawdtagalGAPTDMGASWIHGsnESHPITKIATALGLAEGAGlvrTR-- 107
                    9*************966667*************************99999999999*****************************988754333.. PP

                    C..GCEEEEETTEECC.TTEECHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHH...HHHCCCCHHHHHHHHHCHHHHHHHHHHHHHHHHHHHH CS
  Amino_oxidase  73 g..apkrvlskggref.pgdlspvpaewealleqgalsaellsleeklrlgleall...qktldeldldskslaesleelgrrepgdvevwdrlie 162
                    +  a+ r+ +++   +  ++  + ++++++ll+q++ +    s +  ++l +++     +++ ++ +l + +la s e++ + + ++  +w++ ++
     KOO21629.1 108 NnlAELRLCTENQNSAcSEPSDDQYNPYKSLLSQAQEN----SATTDISLWQALAGlsnSGQTRDSELFQYHLAVSTEFNTAGPVTNLSAWNYNDD 199
                    234666677766666656666666999******87777....444455544444445566668889999999999999999999999999999999 PP

                    HHHHHHHHHHHHCHTSTTTTCBHHHHTCCCCHHHHHTSCCCEETTHTHHHHHHHHH..TTTTEEEETSEEEEEEEEETTCEEEEETTSTEEEESEE CS
  Amino_oxidase 163 pelfaklefasglfagdpselsaklalpllwelegfggslllprgGlsqlpealae..elrgldirlntrVkeikregdgvtvtledgevveaDaV 256
                             ++g+ + +            ++ +e  +++ +++ +G s+l  +     ++ + ++ +n+rV+++++++ gv +t+ d+++++aD+V
     KOO21629.1 200 S-------KFNGAELVWA--------QGYKQMYEALQSGAVRVNDGSSTLQVTAVLsaSRQPISVTYNKRVTSVTYNSTGVVLTTADSSTYNADYV 280
                    5.......7777765544........3333334444444445556666555443333478899********************************* PP

                    EE-S-HHHHH......SSEEESCCSHHHHHHHHHSEEEEEEEEEEEESSGGSGCSTSECECECCCEEETTTEEEEECCECCCSTTTEEEEEEEEEC CS
  Amino_oxidase 257 vvTvplgvlk......ailfsPplpdekaeairnlgfgsvnkvilefdrkfwednalgqgvlvseltttlgeafissdfpsrappgkglvllvyvg 346
                    ++T+plgvlk      +++fsP lp + a+ i +lgfg+v+k+ l f++ +w++  +          t +g   ++   + ++ ++k++ l+++  
     KOO21629.1 281 IITIPLGVLKstdassRVTFSPALPTATANGISQLGFGNVVKIALLFPTNWWPSGTH---YYGLAQGTNRGLFTYF--LNVHELSTKPV-LMTFAL 370
                    *****************************************************9665...4788888999998888..77888888888.****99 PP

                    HHHHHHHTTS-HHHHHHHHHHHHHHHHT...GTSSTCSEEEEEECCTETTTSSSEEE.BTTHHHHHHHHHHCH....................... CS
  Amino_oxidase 347 gdaaneleslsdeelvqavlrdLrklfg...eevpepkatlvtrWhtdplargsysyvsvgpghedydplakp....................... 416
                    g aa+  e++sd e++++++ +L k+f+   +   +  +++++ W+++pla+g+y+yv+vg++++   p+ +                        
     KOO21629.1 371 GAAADTAEGMSDAEVWAQIRANLVKIFPtsvTVPTDAPQIVRSAWRANPLAKGAYTYVAVGASTNPSLPPPSLlplavpfsdlplscpessimagt 466
                    ****************************88777777777***********************7777776666655555576666665555555555 PP

                    ...........HCSTTEEE.SGGGCTTTTTSHHHHHHHHHHHHHHH CS
  Amino_oxidase 417 ...........egdprlffAGehtsreypgtvegAilSGlraAari 451
                               +  +rlffAGehts  + gtv+gA+++G  aA+++
     KOO21629.1 467 skntitdafgrNVGGRLFFAGEHTSALFRGTVHGAFQTGQVAARAV 512
                    555555554444444****************************997 PP

>> NAD_binding_8  NAD(P)-binding Rossmann-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.2   0.7     2e-10   3.9e-07       1      65 [.       8      92 ..       8      95 .. 0.80
   2 ?   -1.6   0.0       1.6   3.2e+03      37      61 ..     560     586 ..     544     591 .. 0.65

  Alignments for each domain:
  == domain 1  score: 30.2 bits;  conditional E-value: 2e-10
                   EE--SHHHHHHHHHHHC....C....TEEEEEE-SSSSSSGGG-EECE.......TT.....CEECTS---EEETTHHHHCHHHH CS
  NAD_binding_8  1 IvGaGlsGlvaAylLak....a....gfdvlllekrdrlGGraasyev.......pg.....vrvdygahifhgsgyypnvrrll 65
                   +vGaG sGl+aA++L +    a    +++ ++le+++r+GGr  + +        +       + d ga+++hgs++++ +++++
     KOO21629.1  8 VVGAGTSGLAAARTLIDtwdtAanggHLELTVLEAGTRIGGRTWTLNAaeagtawDTagalgAPTDMGASWIHGSNESHPITKIA 92
                   8**************8644431468555**************99998877666651156788************99888888765 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 1.6
                    EECE...TTCEECTS---EEETTHHHHC CS
  NAD_binding_8  37 syev...pgvrvdygahifhgsgyypnv 61 
                    s+     + ++v ++a +fh++   +nv
     KOO21629.1 560 SNVTfsaGTYTVTVPAGYFHDG-LGNNV 586
                    44334534599999*****995.34555 PP

>> NAD_binding_9  FAD-NAD(P)-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   0.2   2.1e-06    0.0042       1      46 [.       7      55 ..       7      75 .. 0.90
   2 !    9.0   0.1   0.00066       1.3     113     152 ..     245     283 ..     233     285 .. 0.80

  Alignments for each domain:
  == domain 1  score: 17.1 bits;  conditional E-value: 2.1e-06
  NAD_binding_9  1 aivGaGprGlavlerLlara...kkkspleitlfdp.sepgagrvwrtdq 46
                   ++vGaG +Gla+++ L++     +++ +le+t+ +  + +g gr w  + 
     KOO21629.1  7 VVVGAGTSGLAAARTLIDTWdtaANGGHLELTVLEAgTRIG-GRTWTLNA 55
                   69*****************988888999********77779.****8765 PP

  == domain 2  score: 9.0 bits;  conditional E-value: 0.00066
  NAD_binding_9 113 egvtvevhraevvdleeradgqavlladgaslaadaVvLA 152
                    + ++v+ ++++v++++ + +g+ +++ad +++ ad+V+++
     KOO21629.1 245 QPISVT-YNKRVTSVTYNSTGVVLTTADSSTYNADYVIIT 283
                    444444.599****************************98 PP

>> Thi4  Thi4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.4   4.4e-06    0.0087      19      58 ..       5      51 ..       2      55 .. 0.83

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 4.4e-06
                EEEEE--SHHHHHHHHHH......HHC.TTS-EEEEESSSS--TTTT CS
        Thi4 19 DvvivGaGssGLtaayyl......akk.pdlkvailersvspGGGaw 58
                 vv+vGaG+sGL+aa++l      a +   l++++le+   +GG +w
  KOO21629.1  5 KVVVVGAGTSGLAAARTLidtwdtAANgGHLELTVLEAGTRIGGRTW 51
                69**************9855555444557899************999 PP

>> Pyr_redox_3  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.1   0.1     0.048        95     168     183 ..       7      22 ..       2      43 .. 0.71
   2 ?   11.4   0.1   7.1e-05      0.14      91     131 ..     242     283 ..     208     285 .. 0.92

  Alignments for each domain:
  == domain 1  score: 2.1 bits;  conditional E-value: 0.048
  Pyr_redox_3 168 vViGgknSavDaAlel 183
                  vV+G++ S+  aA  l
   KOO21629.1   7 VVVGAGTSGLAAARTL 22 
                  5555555555555444 PP

  == domain 2  score: 11.4 bits;  conditional E-value: 7.1e-05
  Pyr_redox_3  91 aksfelpiklfeeVesvkkedegfevetske.tyeAkkviiA 131
                  a+++ +++ ++++V+sv+ +++g +++t  + ty+A++vii 
   KOO21629.1 242 ASRQPISVTYNKRVTSVTYNSTGVVLTTADSsTYNADYVIIT 283
                  5678899*******************998765********96 PP

>> Pyr_redox_2  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   0.3   0.00028      0.57       2      21 ..       5      24 ..       4      91 .. 0.75
   2 ?    3.4   0.0     0.018        36     196     235 ..     245     284 ..     195     301 .. 0.77

  Alignments for each domain:
  == domain 1  score: 9.4 bits;  conditional E-value: 0.00028
                 SEEEE--SHHHHHHHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2  2 dvvviGgGpAGlaaaltlaq 21
                 +vvv+G+G  Glaaa+tl  
   KOO21629.1  5 KVVVVGAGTSGLAAARTLID 24
                 68888888888888888865 PP

  == domain 2  score: 3.4 bits;  conditional E-value: 0.018
                  TTEEEEESCEEEEEEETTEEEEEEETTSCEEEESEEEE-S CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2 196 eGvevklgtsvkeidgngeklevvledgeeidadlvvvav 235
                  + + v  +++v+ ++ n++ + +++ d ++++ad+v++ +
   KOO21629.1 245 QPISVTYNKRVTSVTYNSTGVVLTTADSSTYNADYVIITI 284
                  4567777788888888887777777777778888888776 PP

>> HI0933_like  HI0933-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.8   0.3    0.0024       4.8       2      19 ..       5      22 ..       4      49 .. 0.77
   2 ?    6.1   0.0     0.002       3.9      85     161 ..     209     283 ..     200     289 .. 0.79

  Alignments for each domain:
  == domain 1  score: 5.8 bits;  conditional E-value: 0.0024
                 SEEEE--SHHHHHHHHHH CS
  HI0933_like  2 dviviGgGaAGlmaAisa 19
                 +v+v+G+G +Gl aA ++
   KOO21629.1  5 KVVVVGAGTSGLAAARTL 22
                 79*************876 PP

  == domain 2  score: 6.1 bits;  conditional E-value: 0.002
                  HHHHTT--EEE-STTEEEETT.-CHHHHHHHHHHHHHHT-EEE-S--EEEEECETTE.EEEEE.TTEEEEESEEEE- CS
  HI0933_like  85 lveelgvelkeedsgrlFpvsdkaedivdallkelkeagvklrletevksvekeedgkfrvktkseeeleadklvlA 161
                  +++ ++  ++  +sg +  ++  ++++  + +  ++++ +++ ++++v+sv+++++g + ++t ++++++ad+++++
   KOO21629.1 209 WAQGYKQMYEALQSGAVRVND-GSSTLQVTAVLSASRQPISVTYNKRVTSVTYNSTG-VVLTTADSSTYNADYVIIT 283
                  666777777777777777776.55666555566678899**************9999.667777***********98 PP

>> DAO  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   7.4    0.0001      0.21       1      38 [.       5      51 ..       5     303 .. 0.56

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.0001
                EEEEECTSHHHHHHHHHH......HHTT....EEEEESSSSTTSSGGG CS
         DAO  1 dvviiGGGiiGlstAyeL......arrg....VtllekgdiagsgaSg 38
                +vv++G+G  Gl++A+ L      a+ g     t+le+g ++g g ++
  KOO21629.1  5 KVVVVGAGTSGLAAARTLidtwdtAANGghleLTVLEAGTRIG-GRTW 51
                59****************999996555569*********8866.4333 PP

>> Pyr_redox  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.2   0.2    0.0019       3.8       1      34 [.       5      46 ..       5      57 .. 0.73
   2 ?    1.3   0.0      0.26   5.3e+02      52      78 ..     244     267 ..     235     272 .. 0.81

  Alignments for each domain:
  == domain 1  score: 8.2 bits;  conditional E-value: 0.0019
                EEEEECSSHHHHHHHHHH.......HHTT.SEEEEEESSSSS CS
   Pyr_redox  1 kvvvvGgGyiglElAgal.......aelg.kkVtvversdkl 34
                kvvvvG+G++gl +A +l       a+ g  + tv+e++ ++
  KOO21629.1  5 KVVVVGAGTSGLAAARTLidtwdtaANGGhLELTVLEAGTRI 46
                79*************999766665433333466776666666 PP

  == domain 2  score: 1.3 bits;  conditional E-value: 0.26
                 HTTEEEECSEEEEEEEEETTSEEEEEE CS
   Pyr_redox  52 kngievllntkveeiegsedgvesvkl 78 
                 ++ i v +n++v++++ ++ g   v+l
  KOO21629.1 244 RQPISVTYNKRVTSVTYNSTG---VVL 267
                 567999************999...444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1026 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       499  (0.027832); expected 358.6 (0.02)
Passed bias filter:                      369  (0.0205812); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.76u 0.25s 00:00:01.01 Elapsed: 00:00:00.43
# Mc/sec: 7086.42
//
Query:       KOO21630.1  [L=209]
Description: hypothetical protein Ctob_001776 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (209 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       434  (0.0242066); expected 358.6 (0.02)
Passed bias filter:                      308  (0.0171789); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.42u 0.24s 00:00:00.65 Elapsed: 00:00:00.40
# Mc/sec: 1579.01
//
Query:       KOO21631.1  [L=200]
Description: glycosyltransferase-like protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.1e-12   45.6   0.0      6e-12   45.4   0.0    1.1  1  Exostosin  Exostosin family


Domain annotation for each model (and alignments):
>> Exostosin  Exostosin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.4   0.0   3.3e-16     6e-12     227     300 .]      45     134 ..       6     134 .. 0.77

  Alignments for each domain:
  == domain 1  score: 45.4 bits;  conditional E-value: 3.3e-16
   Exostosin 227 d.........ylellassrFClvppGdsptsrrlfdallagCIPVii.......sdqielPfedvl.dwrefsvfvpekdvpelksilrsl 300
                 d           +++ +  FCl+p G   +  r+f + ++gCIPV+i          +   fe +l dw+ ++v+++++d+p+l  ilr+l
  KOO21631.1  45 DlkppppyvsLDAEMLQTIFCLCPSGTG-WGMRVFHSAALGCIPVLIqrdeasaYPPVLQAFEGLLlDWDAIAVRLEPRDLPQLPMILRRL 134
                 13445555567899************99.******************88877744445557888779********************9975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (200 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       340  (0.0189637); expected 358.6 (0.02)
Passed bias filter:                      301  (0.0167884); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.22s 00:00:00.63 Elapsed: 00:00:00.40
# Mc/sec: 1483.02
//
Query:       KOO21632.1  [L=292]
Description: hypothetical protein Ctob_000958 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (292 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1223  (0.0682135); expected 358.6 (0.02)
Passed bias filter:                      431  (0.0240393); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.49u 0.24s 00:00:00.73 Elapsed: 00:00:00.42
# Mc/sec: 2091.89
//
Query:       KOO21633.1  [L=599]
Description: h aca ribonucleoprotein complex subunit 4 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.5e-06   27.4   0.4    5.9e-06   26.6   0.4    1.4  1  EF-hand_7  EF-hand domain pair
    0.00011   21.9   0.0      0.014   15.3   0.0    2.4  2  EF-hand_6  EF-hand domain
    0.00095   18.6   5.6      0.023   14.2   0.0    2.7  3  EF-hand_1  EF hand
     0.0034   17.2   0.3     0.0079   16.0   0.3    1.7  1  EF-hand_8  EF-hand domain pair
  ------ inclusion threshold ------
      0.056   13.0   1.4       0.08   12.5   0.1    2.0  2  EF-hand_5  EF hand
       0.17   11.6   0.1       0.28   11.0   0.1    1.2  1  SurA_N_3   SurA N-terminal domain


Domain annotation for each model (and alignments):
>> EF-hand_7  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.6   0.4     2e-09   5.9e-06       3      69 ..     322     382 ..     320     384 .. 0.93

  Alignments for each domain:
  == domain 1  score: 26.6 bits;  conditional E-value: 2e-09
   EF-hand_7   3 klkeaFkelDtdgdgyldkeellrllrkifqgagegsklsdeelellfkefDtdkdGvisfdEFlkl 69 
                 +l+++F+ +D d +g ++++el+ +l       + g ++sd el  ++++   d++G++ f EF + 
  KOO21633.1 322 RLQQIFEGIDEDSSGAISQRELRTFLD------RAGLEVSDRELTSWIDNSAFDNNGEVEFVEFIEV 382
                 7999*******************9999......888888999**********************986 PP

>> EF-hand_6  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.0   4.8e-06     0.014       1      27 [.     322     348 ..     322     355 .. 0.92
   2 ?    4.0   0.0      0.02        59      11      29 ..     368     385 ..     366     392 .. 0.88

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 4.8e-06
   EF-hand_6   1 elreaFklfDkdgdGkidaeElrkalr 27 
                 +l+++F+ +D d +G i++ Elr +l 
  KOO21633.1 322 RLQQIFEGIDEDSSGAISQRELRTFLD 348
                 5899********************997 PP

  == domain 2  score: 4.0 bits;  conditional E-value: 0.02
   EF-hand_6  11 kdgdGkidaeElrkalrka 29 
                 +d++G++ + E++ +++ +
  KOO21633.1 368 FDNNGEVEFVEFIEVIN-M 385
                 699**********9998.3 PP

>> EF-hand_1  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.2   0.0   7.8e-06     0.023       2      26 ..     323     347 ..     322     350 .. 0.92
   2 !    7.0   0.2    0.0016       4.8      12      28 ..     369     385 ..     368     386 .. 0.90
   3 ?   -3.4   0.4       3.4     1e+04       9      15 ..     430     436 ..     429     437 .. 0.69

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 7.8e-06
                 HHHHHHHHTTTSSSEEEHHHHHHHH CS
   EF-hand_1   2 lkeiFrefDkDgdGkIdfeEfkell 26 
                 l++iF+ +D D +G I+  E++++l
  KOO21633.1 323 LQQIFEGIDEDSSGAISQRELRTFL 347
                 799*******************998 PP

  == domain 2  score: 7.0 bits;  conditional E-value: 0.0016
                 TSSSEEEHHHHHHHHHH CS
   EF-hand_1  12 DgdGkIdfeEfkellkk 28 
                 D++G ++f Ef+e++++
  KOO21633.1 369 DNNGEVEFVEFIEVINM 385
                 9************9876 PP

  == domain 3  score: -3.4 bits;  conditional E-value: 3.4
                 HTTTSSS CS
   EF-hand_1   9 fDkDgdG 15 
                 +D D dG
  KOO21633.1 430 ADADTDG 436
                 5777777 PP

>> EF-hand_8  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.3   2.6e-06    0.0079       2      51 ..     335     382 ..     326     386 .. 0.94

  Alignments for each domain:
  == domain 1  score: 16.0 bits;  conditional E-value: 2.6e-06
   EF-hand_8   2 kgkItreelrril.rilglkkglseeevdilfrefDtdgdGkisfeEFcvl 51 
                 +g I++ elr++l r+ gl+  +s+ e+++ ++   +d++G + f EF+++
  KOO21633.1 335 SGAISQRELRTFLdRA-GLE--VSDRELTSWIDNSAFDNNGEVEFVEFIEV 382
                 799**********999.***..**************************975 PP

>> EF-hand_5  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.1   2.7e-05      0.08       1      25 []     323     347 ..     323     347 .. 0.91
   2 ?   -3.7   0.1       3.4     1e+04       9      14 ..     431     436 ..     430     437 .. 0.61

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 2.7e-05
                 HHHHHHHH-SS-SSCE-HHHHHHHH CS
   EF-hand_5   1 lkdtFqaiDlNgDGkIskeELktlv 25 
                 l++ F+ iD + +G Is  EL+t++
  KOO21633.1 323 LQQIFEGIDEDSSGAISQRELRTFL 347
                 5778999****************85 PP

  == domain 2  score: -3.7 bits;  conditional E-value: 3.4
                 -SS-SS CS
   EF-hand_5   9 DlNgDG 14 
                 D++ DG
  KOO21633.1 431 DADTDG 436
                 666666 PP

>> SurA_N_3  SurA N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.1   9.4e-05      0.28      90     149 ..     336     394 ..     312     400 .. 0.85

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 9.4e-05
    SurA_N_3  90 qlidealllqeakklglsvsdeevakeiasipaFqedGkFdkerYkqlLaangltpeefe 149
                   i+++ l+   ++ gl+vsd+e+ + i +  aF ++G+    ++ ++++     ++++e
  KOO21633.1 336 GAISQRELRTFLDRAGLEVSDRELTSWIDNS-AFDNNGEVEFVEFIEVINMLSRRARAYE 394
                 67999***********************887.8*****9988888777776666666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (599 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       516  (0.0287802); expected 358.6 (0.02)
Passed bias filter:                      262  (0.0146132); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.56u 0.26s 00:00:00.82 Elapsed: 00:00:00.42
# Mc/sec: 4264.38
//
Query:       KOO21634.1  [L=237]
Description: hypothetical protein Ctob_000955 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (237 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       762  (0.042501); expected 358.6 (0.02)
Passed bias filter:                      341  (0.0190195); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.43u 0.27s 00:00:00.70 Elapsed: 00:00:00.43
# Mc/sec: 1656.53
//
Query:       KOO21635.1  [L=66]
Description: hypothetical protein Ctob_000950 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (66 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       137  (0.00764125); expected 358.6 (0.02)
Passed bias filter:                      127  (0.0070835); expected 358.6 (0.02)
Passed Vit filter:                         9  (0.00050198); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.24s 00:00:00.57 Elapsed: 00:00:00.39
# Mc/sec: 507.77
//
Query:       KOO21636.1  [L=617]
Description: ankyrin repeat protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.2e-11   44.9   0.3    3.8e-06   27.4   0.1    3.3  3  Ank_4     Ankyrin repeats (many copies)
    1.3e-11   45.0   0.0    9.1e-07   29.4   0.0    2.5  2  Ank_2     Ankyrin repeats (3 copies)
    2.9e-10   39.5   0.5     0.0018   18.6   0.0    4.6  4  Ank_3     Ankyrin repeat
    1.4e-09   38.0   1.8    4.1e-07   30.2   0.1    3.2  3  Ank_5     Ankyrin repeats (many copies)
    3.7e-09   36.6   2.9    6.7e-06   26.3   0.2    3.7  3  Ank       Ankyrin repeat


Domain annotation for each model (and alignments):
>> Ank_4  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.0   0.0   1.6e-05     0.057      10      54 ..     442     486 ..     433     487 .. 0.87
   2 !   27.4   0.1     1e-09   3.8e-06       5      52 ..     517     563 ..     513     566 .. 0.87
   3 ?   -1.2   0.0      0.94   3.4e+03      19      34 ..     564     579 ..     560     583 .. 0.78

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 1.6e-05
       Ank_4  10 isgrlelvrlLle.kgadinaqdnrsGetalhiAakrgnveilklL 54 
                 ++g+l+++r+ +e  g+d+ +  n  G + lh+Aa++g+ +i+ +L
  KOO21636.1 442 AQGNLPMLRYFVEvLGMDPMMA-NVIGVSTLHCAARHGFNKIICYL 486
                 49***********66***9886.***************98888888 PP

  == domain 2  score: 27.4 bits;  conditional E-value: 1e-09
       Ank_4   5 LhyaaisgrlelvrlLlekgadinaqdnrsGetalhiAakrgnveilk 52 
                 ++ aa  g+  +++lL + gadi+a+  ++G+t+lh Aa  g+  ++ 
  KOO21636.1 517 IDGAAVCGHPSTIKLLASLGADIHAR-RSNGRTPLHSAAAYGHAACVG 563
                 55566679999***************.****************99986 PP

  == domain 3  score: -1.2 bits;  conditional E-value: 0.94
       Ank_4  19 lLlekgadinaqdnrs 34 
                  Ll+ gad+ aq+++ 
  KOO21636.1 564 ELLALGADPEAQADDG 579
                 6999********8775 PP

>> Ank_2  Ankyrin repeats (3 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.1   0.0   6.2e-05      0.22      36      76 ..     443     491 ..     437     498 .. 0.79
   2 !   29.4   0.0   2.6e-10   9.1e-07      27      82 ..     514     575 ..     504     576 .. 0.81

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 6.2e-05
       Ank_2  36 ngnleivklLleh.......adndgrtpLhyAarsghleivklLlek.g 76 
                 +gnl ++++++e        a+  g + Lh+Aar+g  +i+ +L+ k g
  KOO21636.1 443 QGNLPMLRYFVEVlgmdpmmANVIGVSTLHCAARHGFNKIICYLVAKaG 491
                 4778899999995565666667889999*****9998899999996534 PP

  == domain 2  score: 29.4 bits;  conditional E-value: 2.6e-10
       Ank_2  27 ktaLhyAakngnleivklLle.....h.adndgrtpLhyAarsghleivklLlekgadinlk 82 
                 ++++  Aa  g+  ++klL +     h  +++grtpLh Aa +gh  +v  Ll  gad++++
  KOO21636.1 514 LSPIDGAAVCGHPSTIKLLASlgadiHaRRSNGRTPLHSAAAYGHAACVGELLALGADPEAQ 575
                 567777888899999*****955433344499*********************88**99875 PP

>> Ank_3  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.4   0.0       0.2   7.1e+02      12      29 ..     443     460 ..     441     462 .. 0.90
   2 !    9.7   0.0   0.00041       1.5       6      24 ..     471     489 ..     467     495 .. 0.88
   3 ?    4.1   0.0     0.027        96       9      31 .]     520     541 ..     514     541 .. 0.89
   4 !   18.6   0.0   5.1e-07    0.0018       1      30 [.     545     573 ..     545     574 .. 0.95

  Alignments for each domain:
  == domain 1  score: 1.4 bits;  conditional E-value: 0.2
       Ank_3  12 sgnleivkfLlenkgadv 29 
                 +gnl+++++++e  g+d+
  KOO21636.1 443 QGNLPMLRYFVEVLGMDP 460
                 68999**********997 PP

  == domain 2  score: 9.7 bits;  conditional E-value: 0.00041
       Ank_3   6 LhlAarsgnleivkfLlen 24 
                 Lh+Aar+g  +i+++L+ +
  KOO21636.1 471 LHCAARHGFNKIICYLVAK 489
                 9***************985 PP

  == domain 3  score: 4.1 bits;  conditional E-value: 0.027
       Ank_3   9 AarsgnleivkfLlenkgadvna 31 
                 Aa +g+++ +k+L    gad++a
  KOO21636.1 520 AAVCGHPSTIKLLAS-LGADIHA 541
                 89999**99*****9.****985 PP

  == domain 4  score: 18.6 bits;  conditional E-value: 5.1e-07
       Ank_3   1 nGetpLhlAarsgnleivkfLlenkgadvn 30 
                 nG+tpLh Aa +g+ + v  Ll   gad+ 
  KOO21636.1 545 NGRTPLHSAAAYGHAACVGELLA-LGADPE 573
                 7**************99******.9***96 PP

>> Ank_5  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.9   0.0      0.04   1.4e+02      26      51 ..     443     470 ..     442     471 .. 0.88
   2 !    5.0   0.1    0.0088        32       7      37 ..     458     489 ..     455     497 .. 0.85
   3 !   30.2   0.1   1.1e-10   4.1e-07       2      55 ..     533     585 ..     532     586 .. 0.91

  Alignments for each domain:
  == domain 1  score: 2.9 bits;  conditional E-value: 0.04
       Ank_5  26 ygaadvvrlLl.argadlnltdsrG.lt 51 
                 +g+++++r+++   g+d+++ +  G +t
  KOO21636.1 443 QGNLPMLRYFVeVLGMDPMMANVIGvST 470
                 699*****************99887666 PP

  == domain 2  score: 5.0 bits;  conditional E-value: 0.0088
       Ank_5   7 advnrldgggntpLhvAakygaadvvrlLl.a 37 
                 +d+   +  g++ Lh Aa++g   ++++L+ +
  KOO21636.1 458 MDPMMANVIGVSTLHCAARHGFNKIICYLVaK 489
                 6777778889*******************954 PP

  == domain 3  score: 30.2 bits;  conditional E-value: 1.1e-10
       Ank_5   2 lehgpadvnrldgggntpLhvAakygaadvvrlLlargadlnltdsrGltaldl 55 
                 ++ g ad+ +++ +g tpLh Aa yg+a +v +Lla gad+ ++ ++G+ + dl
  KOO21636.1 533 ASLG-ADIHARRSNGRTPLHSAAAYGHAACVGELLALGADPEAQADDGSKPADL 585
                 5667.88899999999*********************************99998 PP

>> Ank  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.4   0.0     0.069   2.5e+02       4      22 ..     469     487 ..     466     510 .. 0.71
   2 !    6.0   0.0    0.0049        17      10      30 ..     521     542 ..     514     544 .. 0.81
   3 !   26.3   0.2   1.9e-09   6.7e-06       1      30 [.     545     575 ..     545     577 .. 0.92

  Alignments for each domain:
  == domain 1  score: 2.4 bits;  conditional E-value: 0.069
                 BHHHHHHHHTTHHHHHHHH CS
         Ank   4 TPLHlAatngkkriiklLL 22 
                 + LH+Aa+ g   ii +L+
  KOO21636.1 469 STLHCAARHGFNKIICYLV 487
                 559****555445888886 PP

  == domain 2  score: 6.0 bits;  conditional E-value: 0.0049
                 HHHTTHHHHHHH..HTTTSTTCB CS
         Ank  10 atngkkriiklL..LhGAnlnal 30 
                 a +g+++ iklL  L GA+++a+
  KOO21636.1 521 AVCGHPSTIKLLasL-GADIHAR 542
                 448*******77444.****997 PP

  == domain 3  score: 26.3 bits;  conditional E-value: 1.9e-09
                 TSBBHHHHHHHHTTHHHHHHHH.TTTSTTCB CS
         Ank   1 dGnTPLHlAatngkkriiklLL.hGAnlnal 30 
                 +G+TPLH Aa +g++ ++ +LL  GA++ a+
  KOO21636.1 545 NGRTPLHSAAAYGHAACVGELLaLGADPEAQ 575
                 7*******999**********966****886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (617 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       391  (0.0218082); expected 358.6 (0.02)
Passed bias filter:                      346  (0.0192983); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.53u 0.23s 00:00:00.76 Elapsed: 00:00:00.39
# Mc/sec: 4764.74
//
Query:       KOO21637.1  [L=193]
Description: hypothetical protein Ctob_000953 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (193 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       578  (0.0322383); expected 358.6 (0.02)
Passed bias filter:                      461  (0.0257125); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.39u 0.22s 00:00:00.61 Elapsed: 00:00:00.37
# Mc/sec: 1581.18
//
Query:       KOO21638.1  [L=229]
Description: hypersensitive-induced response protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.4e-16   61.0   1.9    1.8e-16   60.6   1.9    1.1  1  Band_7    SPFH domain / Band 7 family
  ------ inclusion threshold ------
       0.06   13.9   0.5       0.15   12.6   0.3    1.8  2  DUF2408   Protein of unknown function (DUF2408)


Domain annotation for each model (and alignments):
>> Band_7  SPFH domain / Band 7 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.6   1.9   2.1e-20   1.8e-16      60     175 ..      20     134 ..      10     143 .. 0.89

  Alignments for each domain:
  == domain 1  score: 60.6 bits;  conditional E-value: 2.1e-20
      Band_7  60 pvtidvtviyrv...pddapklvaaveresanldnlirrvlesalrevisemtleellsnreelaeelknelneqlrkyGvevldvritdidpppevaq 155
                  +ti v ++y+v    d +++ ++++     n+++++++++ +++r+++ + +l++++ ++ee+a+++ + l+e+++ +G e+l+  itdidp+ ev++
  KOO21638.1  20 FLTIRVAIQYQVianDDAIKASYYRL----TNPKQQVESYVYDVIRSTVPKINLDDVFTTKEEVAADILENLREAMKDFGYEILSTPITDIDPNREVKN 114
                 57999*******98555555555566....********************************************************************* PP

      Band_7 156 alaakqaaeaeaqaeiarae 175
                 a+++ +++ + ++a++ + e
  KOO21638.1 115 AMNEINKQKRLRVAAEDEGE 134
                 ***99999988877766655 PP

>> DUF2408  Protein of unknown function (DUF2408)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.0       0.4   3.5e+03     101     124 ..      31      54 ..       5      57 .. 0.69
   2 ?   12.6   0.3   1.7e-05      0.15      41      98 ..     109     163 ..      47     191 .. 0.77

  Alignments for each domain:
  == domain 1  score: -1.5 bits;  conditional E-value: 0.4
     DUF2408 101 ekkvasslqpiYdrLleikttLen 124
                     +++++  Y rL++ k++ e+
  KOO21638.1  31 VIANDDAIKASYYRLTNPKQQVES 54 
                 456678889999999999998886 PP

  == domain 2  score: 12.6 bits;  conditional E-value: 1.7e-05
     DUF2408  41 keelkelkeeLkkieskrdeegkFkseegkevvekgqavlngLlddcfdlvedlkaqd 98 
                 + e+k+ ++e++k +  r+       e +++++ + qav++gL + c  + +++k+ d
  KOO21638.1 109 NREVKNAMNEINKQKRLRVA---AEDEGEAGISRQRQAVMEGLRESCAAFHDEIKSID 163
                 56777777777777777776...2233334699999******************9876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (229 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       761  (0.0424452); expected 358.6 (0.02)
Passed bias filter:                      565  (0.0315132); expected 358.6 (0.02)
Passed Vit filter:                        57  (0.00317921); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.43u 0.24s 00:00:00.67 Elapsed: 00:00:00.38
# Mc/sec: 1803.36
//
Query:       KOO21639.1  [L=263]
Description: hypothetical protein Ctob_000956 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (263 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       414  (0.0230911); expected 358.6 (0.02)
Passed bias filter:                      315  (0.0175693); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.41u 0.23s 00:00:00.64 Elapsed: 00:00:00.37
# Mc/sec: 2124.98
//
Query:       KOO21640.1  [L=253]
Description: hypothetical protein Ctob_000957 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    0.00025   21.4   2.0    0.00045   20.6   2.0    1.4  1  zf-TAZ    TAZ zinc finger
  ------ inclusion threshold ------
      0.021   14.7   0.0      0.038   13.9   0.0    1.4  1  RST       RCD1-SRO-TAF4 (RST) plant domain


Domain annotation for each model (and alignments):
>> zf-TAZ  TAZ zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.6   2.0     5e-08   0.00045       5      61 ..     168     229 ..     165     239 .. 0.74

  Alignments for each domain:
  == domain 1  score: 20.6 bits;  conditional E-value: 5e-08
      zf-TAZ   5 lelllHaskCkeaekeekCkklpsCkkmkellkHlksck............kkkeCkvkvCkslrqllr 61 
                 +  l+H ++C++++    C   p+C+++k +lk +++                keCk  +C+ +++l r
  KOO21640.1 168 IHTLVHSFHCDDDD----C-DRPKCRELKLVLKRMEAHVgtcpawrtplgvPVKECK--TCRLWKTLTR 229
                 789*******9998....*.5*******99998666554333388777765335788..8887777665 PP

>> RST  RCD1-SRO-TAF4 (RST) plant domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.0   4.2e-06     0.038       8      56 ..      35      85 ..      33      98 .. 0.84

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 4.2e-06
         RST  8 pFpmLlaalskk..lpkskmdllqkhYedlkkkkIsreefvrklRsivGDk 56
                p+ +L+a+l+    l++ ++d lq ++ ++  + +sr +fv  +  i+G +
  KOO21640.1 35 PVEDLMAVLRADagLQPADWDRLQDLHGQYDAGTLSRRDFVDNMAAIIGST 85
                677888888764349**********************************65 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (253 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       564  (0.0314574); expected 358.6 (0.02)
Passed bias filter:                      380  (0.0211947); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.40u 0.23s 00:00:00.63 Elapsed: 00:00:00.37
# Mc/sec: 2036.49
//
Query:       KOO21641.1  [L=193]
Description: hypothetical protein Ctob_000951 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (193 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       239  (0.0133304); expected 358.6 (0.02)
Passed bias filter:                      204  (0.0113782); expected 358.6 (0.02)
Passed Vit filter:                        12  (0.000669307); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.21s 00:00:00.57 Elapsed: 00:00:00.36
# Mc/sec: 1603.20
//
Query:       KOO21642.1  [L=291]
Description: hypersensitive-induced response protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
      3e-22   79.5   0.4    4.6e-22   78.9   0.4    1.3  1  Band_7         SPFH domain / Band 7 family
  ------ inclusion threshold ------
       0.01   15.6   0.4      0.042   13.6   0.4    2.1  1  Flagellar_put  Putative flagellar


Domain annotation for each model (and alignments):
>> Band_7  SPFH domain / Band 7 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   78.9   0.4   5.1e-26   4.6e-22       3     176 ..       8     179 ..       6     188 .. 0.90

  Alignments for each domain:
  == domain 1  score: 78.9 bits;  conditional E-value: 5.1e-26
      Band_7   3 ieegevgvvvrfGklsrvlepGlhfilP.fgrsvtvvsvrvqtldvsvsltvptkDglpvtidvtviyrv.pddapklvaaveresanldnlirrvles 99 
                 +e+g+v  v+r G+   + +pGl+f++    ++   vs+r q++ v+   ++ tkD++  +i+v+++y++ ++ a+ ++a +  +  ++ ++i+ ++ +
  KOO21642.1   8 TETGNVRMVERCGAFTYIMQPGLSFVICcVDEASNHVSMRLQQIKVTC--ETKTKDNVFTNIEVSIQYQIkKEEAAMHSAYY--RLSDPHRQIQAYVYD 102
                 5789999999***************6661555555*************..********************766666666666..99************* PP

      Band_7 100 alrevisemtleellsnreelaeelknelneqlrkyGvevldvritdidpppevaqalaakqaaeaeaqaeiaraea 176
                 ++r+++ +++l+ ++ +++e a+++++ l+e++  +G e+l   it+i+p+ ev++a+++ ++a++ ++a+  + ea
  KOO21642.1 103 VVRSTVPKLDLDNVFLEKDETAKQVAENLKENFGSFGYEILATPITAIEPAVEVKNAMNQINKARRVKEAAGDEGEA 179
                 ******************************************************************99877666555 PP

>> Flagellar_put  Putative flagellar
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.4   4.7e-06     0.042      10      19 ..      58      67 ..      53      68 .. 0.84

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 4.7e-06
  Flagellar_put 10 emkenVFTNI 19
                    +k+nVFTNI
     KOO21642.1 58 KTKDNVFTNI 67
                   579******* PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (291 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       929  (0.0518155); expected 358.6 (0.02)
Passed bias filter:                      527  (0.0293937); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.48u 0.24s 00:00:00.72 Elapsed: 00:00:00.42
# Mc/sec: 2099.49
//
Query:       KOO21643.1  [L=282]
Description: membrane protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.5e-45  154.4   3.7      4e-45  154.2   3.7    1.0  1  DUF1295   Protein of unknown function (DUF1295)
     0.0019   18.6   0.1     0.0086   16.5   0.0    2.0  2  ICMT      Isoprenylcysteine carboxyl methyltransferase (ICMT)
  ------ inclusion threshold ------
      0.085   13.3   0.0       0.25   11.8   0.0    1.9  1  PEMT      Phospholipid methyltransferase


Domain annotation for each model (and alignments):
>> DUF1295  Protein of unknown function (DUF1295)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  154.2   3.7   6.7e-49     4e-45       1     234 [.      25     256 ..      25     257 .. 0.92

  Alignments for each domain:
  == domain 1  score: 154.2 bits;  conditional E-value: 6.7e-49
     DUF1295   1 lflislltkssslvDvlwgvlfvilavltlll..seaaklrrllvllLvvlWglRLalhllrrtlkkgeDkryeelrkelgktiallsllvvfvlQavl 97 
                 l+l+sl+ ++++ vD++w+  + +  +l+++   + +   rr+l  +Lv lWg RL+++++ r     eD+ry+++r+++g++ +  s+++vf+ Q ++
  KOO21643.1  25 LWLVSLRLGKTWPVDFIWSGWPLLQCALIIARdpHGGLFARRALTCTLVALWGGRLTYNFVSRGGIGHEDWRYTDMRQQFGSHFWWVSFFSVFLGQSIF 123
                 6**********************99998888875566999***********************87777***************8888************ PP

     DUF1295  98 lylvalpvllaaaskeeqalkaldviglalwlvgivlealaDqQlsafkkdpankgk..vldsGLwrysRHPNYfgealiWwglflialealegleala 194
                 ++  +l+++ a    e++al + d +++ + l +i lea+aD Q  af+++ +  +   v+d+G+w +sRHPNYf+ea +Wwgl+ +++ ++ +   la
  KOO21643.1 124 MFGGCLSLYDALL--ETHALDVFDAAAACVSLGAISLEATADLQMDAFQRERRMVTTapVIDRGVWLWSRHPNYFAEASWWWGLWFLSARSGGP-GGLA 219
                 *********9988..799******************************99888766557*******************************9776.4788 PP

     DUF1295 195 iagpllltlllvfvsgipllEkkalkkykdkeeyreYqkk 234
                  +gp  +t l + +s i+llE + l+ ++  ++y eY + 
  KOO21643.1 220 WIGPAGITSLFLLIS-IKLLEDRQLRTKG--AAYLEYMRD 256
                 89999******9999.*********9888..999999875 PP

>> ICMT  Isoprenylcysteine carboxyl methyltransferase (ICMT) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.1      0.48   2.9e+03       6      25 ..      19      38 ..      15      43 .. 0.65
   2 !   16.5   0.0   1.4e-06    0.0086      28      52 ..     174     198 ..     147     209 .. 0.80

  Alignments for each domain:
  == domain 1  score: -1.2 bits;  conditional E-value: 0.48
        ICMT  6 llaqalrlvvmatlGeiwtt 25
                l   +l++ v   lG+ w +
  KOO21643.1 19 LSICVLLWLVSLRLGKTWPV 38
                34445566677889999965 PP

  == domain 2  score: 16.5 bits;  conditional E-value: 1.4e-06
        ICMT  28 ailpdhklvksglykylrHPnYllf 52 
                  ++ +++++++g++ + rHPnY++ 
  KOO21643.1 174 RMVTTAPVIDRGVWLWSRHPNYFAE 198
                 5678899***************985 PP

>> PEMT  Phospholipid methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   4.2e-05      0.25      17      72 ..     151     211 ..     139     245 .. 0.77

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 4.2e-05
        PEMT  17 vlssiealgefgtfygdfFlelmd.....klvtsGiYrylnnPeyvgstlgflGlaLitgs 72 
                 v     +l  +    +d F ++ +      ++ +G++ ++++P y++    ++Gl +++  
  KOO21643.1 151 VSLGAISLEATADLQMDAFQRERRmvttaPVIDRGVWLWSRHPNYFAEASWWWGLWFLSAR 211
                 5555566666666777777776666777678899*********************998765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (282 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       335  (0.0186848); expected 358.6 (0.02)
Passed bias filter:                      205  (0.011434); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.42u 0.21s 00:00:00.63 Elapsed: 00:00:00.37
# Mc/sec: 2282.10
//
Query:       KOO21644.1  [L=207]
Description: hypothetical protein Ctob_000968 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (207 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       427  (0.0238162); expected 358.6 (0.02)
Passed bias filter:                      324  (0.0180713); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.41u 0.25s 00:00:00.65 Elapsed: 00:00:00.41
# Mc/sec: 1524.52
//
Query:       KOO21645.1  [L=164]
Description: hypothetical protein Ctob_000949 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
     0.0071   16.5   7.9      0.011   15.9   7.9    1.2  1  DUF3958   Protein of unknown function (DUF3958)
  ------ inclusion threshold ------
       0.24   12.1  13.4       0.43   11.3  13.4    1.4  1  KfrA_N    Plasmid replication region DNA-binding N-term


Domain annotation for each model (and alignments):
>> DUF3958  Protein of unknown function (DUF3958)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   7.9   1.2e-06     0.011      41     100 ..      40      99 ..      36     105 .. 0.93

  Alignments for each domain:
  == domain 1  score: 15.9 bits;  conditional E-value: 1.2e-06
     DUF3958  41 skrlfdelletfrkdeeshlfeklrdevqrlsrklredLEeeeeeLkrekrqLedqeeel 100
                 + r ++ l e +++  +   ++++++ ++++s + +++LEe+++   +++r+L++++e+l
  KOO21645.1  40 APRSMQDLNELLQQAYQKGAYDAMQQQAVQQSGERQDKLEEQQRANAQQERELRKRIEAL 99 
                 5677999**************************************************987 PP

>> KfrA_N  Plasmid replication region DNA-binding N-term
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3  13.4   4.8e-05      0.43      50     114 ..      37     102 ..      25     103 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 4.8e-05
      KfrA_N  50 alaaraa.pelPealaeallaalwqaaleeaeeelaaaraelqaaraaleaeraeaearveeleae 114
                 + +a+   ++l e l++a  +  ++a++++a ++  +++++l+++++a  ++ +e+++r+e+l+a+
  KOO21645.1  37 REEAPRSmQDLNELLQQAYQKGAYDAMQQQAVQQSGERQDKLEEQQRANAQQERELRKRIEALQAR 102
                 2222222579999999999999*****************************************985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (164 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2715  (0.151431); expected 358.6 (0.02)
Passed bias filter:                      982  (0.0547716); expected 358.6 (0.02)
Passed Vit filter:                       100  (0.00557756); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.49u 0.26s 00:00:00.75 Elapsed: 00:00:00.42
# Mc/sec: 1184.88
//
Query:       KOO21646.1  [L=114]
Description: hypothetical protein Ctob_000948 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
     0.0072   16.8   0.0     0.0099   16.4   0.0    1.2  1  NDUFB10   NADH-ubiquinone oxidoreductase subunit 10


Domain annotation for each model (and alignments):
>> NDUFB10  NADH-ubiquinone oxidoreductase subunit 10
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   0.0   5.5e-07    0.0099      38      92 ..      37      90 ..      27     107 .. 0.84

  Alignments for each domain:
  == domain 1  score: 16.4 bits;  conditional E-value: 5.5e-07
                S-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSTTSS--HHHHHHHH CS
     NDUFB10 38 ddlvClyeaemqykrDkkvdqeilkilrerleeCeqyeeedseekCkkllkeyee 92
                d  +  +e ++q  r++ +  e +ki++ +l++C    ++++ e Ck+l +++ e
  KOO21646.1 37 DAFAVHMEVDTQV-REYLIAVEKVKIMQAKLKACYEKSGPNHFEDCKELRETLWE 90
                5556678888885.789999999*************************9998765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (114 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       428  (0.0238719); expected 358.6 (0.02)
Passed bias filter:                      372  (0.0207485); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.24s 00:00:00.61 Elapsed: 00:00:00.39
# Mc/sec: 887.02
//
Query:       KOO21647.1  [L=358]
Description: mono-or diacylglycerol acyltransferase type 2 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.7e-30  104.5   0.0    6.4e-30  104.1   0.0    1.1  1  DAGAT     Diacylglycerol acyltransferase


Domain annotation for each model (and alignments):
>> DAGAT  Diacylglycerol acyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  104.1   0.0   3.6e-34   6.4e-30      16     287 ..      98     349 ..      82     356 .. 0.80

  Alignments for each domain:
  == domain 1  score: 104.1 bits;  conditional E-value: 3.6e-34
       DAGAT  16 avwllydidspkkggyrsnwvrrlavlkyfaeYfPvkLvktaeletdrnYliGyhPhgilsvgafvalatdatgvkekfpgirfnlatLa.gqfrtpfr 113
                 +v ll   + p  ++  ++ +   a++kyf+  f  +    ++ e+  +++    Phg+l+ +   ++   a +        r  + + a    +tpf+
  KOO21647.1  98 VVALLAMHPLPECSKAARESIFATALYKYFTYRFVWSGDAREKAEAAPAWIGAGPPHGVLPFANVLSIP--AINTFAC----RHFVGAGAsVVEKTPFL 190
                 34445555566666665555556688888888887777666777888888888899******9955554..4443333....444433331445799*9 PP

       DAGAT 114 reillllGlievsresieyvLdkeekGravvlvvGGaeealeahpgketltLkkrkGfvkialktGadLvPvysfGendvykqvenpkgsklrkvqekl 212
                 r +  l G+i+vs  si++ L +   G  v lv+ G++  + ++   e + Lk+rkG  k+al+tG+++vP ys G+++ y  v    g+      e++
  KOO21647.1 191 RYM-SLFGMIDVSARSITKALAR---GTCVGLVPDGIAGIFRTNARDEVVKLKERKGIAKLALRTGTPIVPAYSVGNSRAYTAVFDRWGLL-----EIV 280
                 965.568************9976...667****************************************************9997777654.....689 PP

       DAGAT 213 kkvlglsppilyGrglfnsltlGllPfrkpittvvGkPievtkteePtkeeidelhakYveaLaeLfeehkekfg 287
                 +++ + s  +++Gr +        +P r  it+ +G+Pi v+k+eePt  +id lh+ Y+ +++ Lf++hk+  g
  KOO21647.1 281 SRKAQASIFLYFGRFYLP------IPRRVNITMLIGEPIMVDKVEEPTPAQIDALHERYLMEMKALFDRHKASLG 349
                 999999999****87777......9**********************************************9876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (358 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       418  (0.0233142); expected 358.6 (0.02)
Passed bias filter:                      277  (0.0154498); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.22s 00:00:00.66 Elapsed: 00:00:00.37
# Mc/sec: 2938.80
//
Query:       KOO21648.1  [L=561]
Description: DNA mismatch repair protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    4.3e-06   26.4   0.0    4.9e-05   23.0   0.0    2.1  1  DNA_mis_repair  DNA mismatch repair protein, C-terminal domai
    1.9e-05   25.1   0.0    4.4e-05   24.0   0.0    1.5  1  HATPase_c       Histidine kinase-, DNA gyrase B-, and HSP90-l
    0.00047   20.0   0.1      0.001   18.9   0.1    1.5  1  HATPase_c_3     Histidine kinase-, DNA gyrase B-, and HSP90-l
  ------ inclusion threshold ------
      0.037   13.5   0.1      0.096   12.2   0.1    1.6  1  Copper-fist     Copper fist DNA binding domain
      0.059   13.4   0.2       0.24   11.4   0.1    2.1  3  DNA_photolyase  DNA photolyase


Domain annotation for each model (and alignments):
>> DNA_mis_repair  DNA mismatch repair protein, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.0   0.0   1.4e-08   4.9e-05      13     102 ..     208     316 ..     198     332 .. 0.88

  Alignments for each domain:
  == domain 1  score: 23.0 bits;  conditional E-value: 1.4e-08
                     EEEEEEEETTEEEEEEEE-CCG-BTTGGEEEEEETTEEE--H.HHHHHHHHHHH..................CCSSSSSB-EEEEEEEESSGGEE CS
  DNA_mis_repair  13 lleiekeeeqlkieGfiskpelsrskrdkqflfvNgRlvksk.elkkaireaYk..................ellpkgrypvvvLnleidpeevD 88 
                     ++++   + ++++eGf + p + +++r+ q+lf N+R+++ + el++++++a +                  +   +  + ++vL+l+ +p++ D
      KOO21648.1 208 MVPLAFMHAGFSLEGFAAVPPAGHRSRECQHLFLNQRPLSPRtELHQLLEAALTkvalaltaasaptaggsaQAPTSVPHAAFVLFLRCPPSCFD 302
                     6777888899*****************************9887999999999999999999999999998755555667899************* PP

                     -TSSTT----EETT CS
  DNA_mis_repair  89 vNvhPtKreVrfqd 102
                       ++P+K++  f d
      KOO21648.1 303 LTLEPDKSDATFID 316
                     ********998866 PP

>> HATPase_c  Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.0   0.0   1.2e-08   4.4e-05       9      63 ..      33      83 ..      28     111 .. 0.83

  Alignments for each domain:
  == domain 1  score: 24.0 bits;  conditional E-value: 1.2e-08
                HHHHHHHHHHHHHSTTTEEEEEEEEEETEEEEEEEESSSSSTTHHHTGTCSTTCH CS
   HATPase_c  9 iisnlvdNavkfatkageieveikaseddlvisveDnGiGipkedlkklfekfsq 63
                i  +lv Na+++   a+e++v++++      i+v+DnG+Gi+ + l ++++++++
  KOO21648.1 33 IAEELVLNALDA--GASEVSVSVDVL--GCYIQVRDNGCGIDLDGLRMIGDRHVT 83
                7789*******7..678888888843..69*****************99997776 PP

>> HATPase_c_3  Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.9   0.1   2.8e-07     0.001       9      51 ..      36      75 ..      29      91 .. 0.87

  Alignments for each domain:
  == domain 1  score: 18.9 bits;  conditional E-value: 2.8e-07
  HATPase_c_3  9 elvdNsldAdaenvkievnknrgktgeivieDdGkGmseeelk 51
                 elv N+ldA a +v+++v+        i+++D+G G++ + l+
   KOO21648.1 36 ELVLNALDAGASEVSVSVDVLG---CYIQVRDNGCGIDLDGLR 75
                 8******************964...89***********99886 PP

>> Copper-fist  Copper fist DNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.1   2.7e-05     0.096      16      29 ..     230     246 ..     229     248 .. 0.91

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 2.7e-05
                  TSGGGG---...-SS-E CS
  Copper-fist  16 GHRsstCkH...sdrpl 29 
                  GHRs +C+H   ++rpl
   KOO21648.1 230 GHRSRECQHlflNQRPL 246
                  9********99999998 PP

>> DNA_photolyase  DNA photolyase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.1   6.6e-05      0.24      42     117 ..      76     157 ..      40     172 .. 0.80
   2 ?   -1.3   0.0      0.52   1.9e+03      84     115 ..     231     262 ..     155     274 .. 0.67
   3 ?   -3.8   0.0       3.1   1.1e+04      56      76 ..     520     540 ..     513     542 .. 0.73

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 6.6e-05
                     S-CHHHHHHHHHHHHHHHHHHHHTT--EEEEESS......HHHHHHHHHHHCTECEEEEE---SHHHHHHHHHHHHHHHHCT CS
  DNA_photolyase  42 rvgaarvdfllesLadLdeeLrelgirLvvrrgd......padvlpelakelgasavvanreyepdererdeavkealrkag 117
                      +g++ v   l+sLadLd++ +    +  v+r        pa +++++ +++ a++++anr++++++++r  a ++ +++a 
      KOO21648.1  76 MIGDRHVTSKLASLADLDSAAAPSSTHAAVLRFGlrqsvgPAHEVRAVGTTVTARDLFANRSVSRKQHQRPGAAAAEVEQAR 157
                     468888889999*******998887665555555566678*********************************999999765 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 0.52
                     HHHCTECEEEEE---SHHHHHHHHHHHHHHHH CS
  DNA_photolyase  84 akelgasavvanreyepdererdeavkealrk 115
                      ++ +++++++n+++ +  +e  + +++al k
      KOO21648.1 231 HRSRECQHLFLNQRPLSPRTELHQLLEAALTK 262
                     45556778888888888888888888777775 PP

  == domain 3  score: -3.8 bits;  conditional E-value: 3.1
                     HHHHHHHHHTT--EEEEESSH CS
  DNA_photolyase  56 adLdeeLrelgirLvvrrgdp 76 
                     ++L eeL++   +L + +g+p
      KOO21648.1 520 QALLEELARCEQPLQCAHGRP 540
                     567778888888888888776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (561 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       403  (0.0224776); expected 358.6 (0.02)
Passed bias filter:                      219  (0.0122148); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.53u 0.26s 00:00:00.79 Elapsed: 00:00:00.42
# Mc/sec: 3976.52
//
Query:       KOO21649.1  [L=208]
Description: hypothetical protein Ctob_000945 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    3.8e-07   29.2   0.1    2.1e-05   23.7   0.1    2.7  2  EF-hand_1     EF hand
    2.8e-06   27.7   2.6    1.8e-05   25.1   0.3    2.4  2  EF-hand_7     EF-hand domain pair
    3.7e-06   26.4   0.0    0.00017   21.2   0.0    2.6  2  EF-hand_6     EF-hand domain
    1.1e-05   25.2   0.8       0.19   11.6   0.0    2.7  3  EF-hand_10    EF hand
    1.6e-05   24.1   2.0     0.0013   18.2   0.0    2.8  3  EF-hand_5     EF hand
  ------ inclusion threshold ------
      0.062   13.6   0.9         11    6.3   0.1    3.4  4  SPARC_Ca_bdg  Secreted protein acidic and rich in cysteine Ca


Domain annotation for each model (and alignments):
>> EF-hand_1  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.7   0.1   7.1e-09   2.1e-05       2      28 ..      23      49 ..      22      50 .. 0.92
   2 ?    2.7   0.0     0.037   1.1e+02       2      17 ..     108     123 ..     107     125 .. 0.83

  Alignments for each domain:
  == domain 1  score: 23.7 bits;  conditional E-value: 7.1e-09
                HHHHHHHHTTTSSSEEEHHHHHHHHHH CS
   EF-hand_1  2 lkeiFrefDkDgdGkIdfeEfkellkk 28
                 +++F+++D+ ++G I++eE++++l++
  KOO21649.1 23 TDRLFEKYDTSKSGLIEKEELRAMLMA 49
                6899********************986 PP

  == domain 2  score: 2.7 bits;  conditional E-value: 0.037
                 HHHHHHHHTTTSSSEE CS
   EF-hand_1   2 lkeiFrefDkDgdGkI 17 
                 ++++Fr +D + + ++
  KOO21649.1 108 IERLFRQADANDSRTL 123
                 7899******988766 PP

>> EF-hand_7  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.1   0.3   5.9e-09   1.8e-05       3      62 ..      22     124 ..      20     125 .. 0.80
   2 !    5.8   0.7    0.0064        19       2      63 ..     106     174 ..     105     177 .. 0.63

  Alignments for each domain:
  == domain 1  score: 25.1 bits;  conditional E-value: 5.9e-09
   EF-hand_7   3 klkeaFkelDtdgdgyldkeellrllrkifqga......................................gegsklsd...........eelellfke 52 
                 ++ + F+++Dt ++g ++keel+ +l +i q +                                                         e +e+lf+ 
  KOO21649.1  22 ETDRLFEKYDTSKSGLIEKEELRAMLMAIEQEKgqltlvseagleklldrmlknygeegpeglgvsrenalT------AmkryrawlkheEMIERLFRQ 114
                 56678*******************999999999999999999999999999999999999877774444440......344455555443669999999 PP

   EF-hand_7  53 fDtdkdGvis 62 
                  D ++++++ 
  KOO21649.1 115 ADANDSRTLE 124
                 9999998775 PP

  == domain 2  score: 5.8 bits;  conditional E-value: 0.0064
   EF-hand_7   2 eklkeaFkelDtdgdgyldkee.llrllrkifqga...gegsklsdeelellfkefDtdkdG....visf 63 
                 e +++ F++ D +++  l++   ++ +l+ +  +     +g  + d  ++ +++  D  kdG    vi++
  KOO21649.1 106 EMIERLFRQADANDSRTLERGGeIKVFLT-LVVNEfpeLRGITVEDSDVDFILERCDGFKDGvkneVIDM 174
                 56888899999999999998765775443.2222245666666666667777777776666655555555 PP

>> EF-hand_6  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.2   0.0   5.8e-08   0.00017       4      27 ..      25      48 ..      22      56 .. 0.92
   2 ?    2.3   0.0     0.067     2e+02       2      18 ..     108     124 ..     107     126 .. 0.85

  Alignments for each domain:
  == domain 1  score: 21.2 bits;  conditional E-value: 5.8e-08
   EF-hand_6  4 eaFklfDkdgdGkidaeElrkalr 27
                ++F+++D++++G i +eElr++l 
  KOO21649.1 25 RLFEKYDTSKSGLIEKEELRAMLM 48
                79*******************996 PP

  == domain 2  score: 2.3 bits;  conditional E-value: 0.067
   EF-hand_6   2 lreaFklfDkdgdGkid 18 
                 ++++F++ D +++ ++ 
  KOO21649.1 108 IERLFRQADANDSRTLE 124
                 6799*******998875 PP

>> EF-hand_10  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.4   0.1   7.2e-05      0.21      24      44 ..      24      44 ..      18      49 .. 0.87
   2 !   11.6   0.0   6.4e-05      0.19      24      48 ..     109     134 ..     104     136 .. 0.87
   3 ?   -2.8   0.0         2   6.1e+03      18      36 ..     148     166 ..     145     168 .. 0.67

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 7.2e-05
  EF-hand_10 24 ekLFkkcDkSksgrLegeEie 44
                  LF k D+Sksg +e eE+ 
  KOO21649.1 24 DRLFEKYDTSKSGLIEKEELR 44
                67*****************86 PP

  == domain 2  score: 11.6 bits;  conditional E-value: 6.4e-05
  EF-hand_10  24 ekLFkkcDkSksgrLe.geEieeFyk 48 
                 e LF+++D   s +Le g Ei+ F+ 
  KOO21649.1 109 ERLFRQADANDSRTLErGGEIKVFLT 134
                 79*************9789*****86 PP

  == domain 3  score: -2.8 bits;  conditional E-value: 2
  EF-hand_10  18 vddeYAekLFkkcDkSksg 36 
                 v+d+    +  +cD  k+g
  KOO21649.1 148 VEDSDVDFILERCDGFKDG 166
                 5566566677889976665 PP

>> EF-hand_5  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.2   0.0   4.2e-07    0.0013       4      24 ..      26      46 ..      23      48 .. 0.89
   2 !    4.9   0.1    0.0067        20       2      11 ..     109     118 ..     108     120 .. 0.82
   3 ?   -2.7   0.1       1.7     5e+03      16      20 ..     172     176 ..     171     176 .. 0.86

  Alignments for each domain:
  == domain 1  score: 18.2 bits;  conditional E-value: 4.2e-07
                HHHHH-SS-SSCE-HHHHHHH CS
   EF-hand_5  4 tFqaiDlNgDGkIskeELktl 24
                +F++ D+ ++G I keEL+++
  KOO21649.1 26 LFEKYDTSKSGLIEKEELRAM 46
                8******************96 PP

  == domain 2  score: 4.9 bits;  conditional E-value: 0.0067
                 HHHHHHH-SS CS
   EF-hand_5   2 kdtFqaiDlN 11 
                 + +F+++D+N
  KOO21649.1 109 ERLFRQADAN 118
                 668******9 PP

  == domain 3  score: -2.7 bits;  conditional E-value: 1.7
                 E-HHH CS
   EF-hand_5  16 IskeE 20 
                 I++eE
  KOO21649.1 172 IDMEE 176
                 99999 PP

>> SPARC_Ca_bdg  Secreted protein acidic and rich in cysteine Ca binding region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.3   0.1    0.0038        11      40      84 ..       7      50 ..       2      70 .. 0.76
   2 ?    2.7   0.0      0.05   1.5e+02      83     104 ..     101     122 ..      87     128 .. 0.73
   3 ?    0.4   0.0      0.26   7.9e+02      87     103 ..     150     166 ..     133     179 .. 0.66
   4 ?   -1.7   0.0       1.2   3.5e+03       9      32 ..     174     197 ..     171     205 .. 0.74

  Alignments for each domain:
  == domain 1  score: 6.3 bits;  conditional E-value: 0.0038
  SPARC_Ca_bdg 40 lekkeeeknlkeckepvawkFsklDtnsdkvlsksELaplraplv 84
                  ++k+e     ++  ++    F+k Dt + ++++k+EL+++ +  +
    KOO21649.1  7 KKKRERAAREHQLDQETDRLFEKYDTSKSGLIEKEELRAMLMA-I 50
                  556666667777777888889999*999999999999998774.3 PP

  == domain 2  score: 2.7 bits;  conditional E-value: 0.05
  SPARC_Ca_bdg  83 lvklehCikpflescDadkdkk 104
                     k+e+ i+++++++Da++ ++
    KOO21649.1 101 WLKHEEMIERLFRQADANDSRT 122
                   4577888888888888887665 PP

  == domain 3  score: 0.4 bits;  conditional E-value: 0.26
  SPARC_Ca_bdg  87 ehCikpflescDadkdk 103
                   ++ ++  le+cD  kd+
    KOO21649.1 150 DSDVDFILERCDGFKDG 166
                   3445556899**99996 PP

  == domain 4  score: -1.7 bits;  conditional E-value: 1.2
  SPARC_Ca_bdg   9 laelpeRlrdWlknlleelkeree 32 
                   ++e +  +  W+++++++++  ++
    KOO21649.1 174 MEEAGPAVATWIQVVRAKVRPPRR 197
                   5566666788***99999876655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (208 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       966  (0.0538792); expected 358.6 (0.02)
Passed bias filter:                      631  (0.0351944); expected 358.6 (0.02)
Passed Vit filter:                        52  (0.00290033); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.44u 0.26s 00:00:00.70 Elapsed: 00:00:00.40
# Mc/sec: 1575.77
//
Query:       KOO21650.1  [L=181]
Description: 2og-fe oxygenase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
      1e-08   36.0   0.1    1.6e-08   35.4   0.1    1.3  1  2OG-FeII_Oxy_3  2OG-Fe(II) oxygenase superfamily
      0.006   17.0   0.0       0.01   16.3   0.0    1.3  1  2OG-FeII_Oxy    2OG-Fe(II) oxygenase superfamily
  ------ inclusion threshold ------
      0.018   15.4   0.0      0.028   14.8   0.0    1.4  1  2OG-FeII_Oxy_5  Putative 2OG-Fe(II) oxygenase


Domain annotation for each model (and alignments):
>> 2OG-FeII_Oxy_3  2OG-Fe(II) oxygenase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.4   0.1   2.6e-12   1.6e-08       3      96 .]      91     179 ..      89     179 .. 0.82

  Alignments for each domain:
  == domain 1  score: 35.4 bits;  conditional E-value: 2.6e-12
                     EEEE-TT-EEEE.E-SS--.--TT.-.EEEEEEEEE....ET-B--EEE..........---TT-EEEEE-..B-TEEE--B.-SS-EEEEEEEE CS
  2OG-FeII_Oxy_3   3 vlrygegqeykp.HvDnfe.keegsgqrrltvllyLnekeseeGGelelyekdkeavkikpkkgrlvlFesdellpHevlpvtkggeRlsltgwi 95 
                     ++ y +g++yk  H+   +  e+g  +r l ++ yLn+  ++ GG   +    +++++++p kg  v++++d +  H++ p  + +e+ ++tgw+
      KOO21650.1  91 FQYYPPGGGYKVyHTERVDrVEPG-ASRHLVFMTYLNT-VNDAGGTQFV----HQNITVQPVKGLTVIWPADWTFFHRGIPSPT-QEKRIATGWF 178
                     778988888887699999954445.89*********94.5568997666....457999************99999*****855.4********9 PP

                     E CS
  2OG-FeII_Oxy_3  96 r 96 
                     +
      KOO21650.1 179 N 179
                     5 PP

>> 2OG-FeII_Oxy  2OG-Fe(II) oxygenase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.0   1.7e-06      0.01       9      94 ..      93     174 ..      86     180 .. 0.71

  Alignments for each domain:
  == domain 1  score: 16.3 bits;  conditional E-value: 1.7e-06
                   EE-S-.......-----..---EEEEEESSSEEEEEEE-.TT---EEEETEEEE----TTEEEEEE-HHHHHHTTS-S----EEE----GTGSEEE CS
  2OG-FeII_Oxy   9 yypph.......pdpev..ilglgahtdaslltillqdd.vgglevfkdgkwlrvppvdnslivniGdallflsngryksvlHrVlpvnegerRvs 94 
                   yypp        ++  +      ga++   ++t+l++ +  gg + +++   ++v+pv++ +++ + d           +++Hr+ p+ ++e+R++
    KOO21650.1  93 YYPPGggykvyhTE--RvdRVEPGASRHLVFMTYLNTVNdAGGTQFVHQ--NITVQPVKGLTVIWPADW----------TFFHRGIPSPTQEKRIA 174
                   67777665443222..14577789***************7777776333..577777777777777775..........69*****9999998876 PP

>> 2OG-FeII_Oxy_5  Putative 2OG-Fe(II) oxygenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.8   0.0   4.8e-06     0.028      58      97 ..     133     174 ..      97     179 .. 0.76

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 4.8e-06
  2OG-FeII_Oxy_5  58 akeenqslvdvkpkeGdlvlFPs..wlrHevlpnegeeeRis 97 
                       +  ++ ++v+p +G  v++P+   ++H+ +p+ ++e+Ri 
      KOO21650.1 133 GTQFVHQNITVQPVKGLTVIWPAdwTFFHRGIPSPTQEKRIA 174
                     334458999*************954478************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (181 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       307  (0.0171231); expected 358.6 (0.02)
Passed bias filter:                      268  (0.0149478); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.39u 0.24s 00:00:00.63 Elapsed: 00:00:00.39
# Mc/sec: 1401.96
//
Query:       KOO21651.1  [L=161]
Description: hypothetical protein Ctob_000961 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (161 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       429  (0.0239277); expected 358.6 (0.02)
Passed bias filter:                      304  (0.0169558); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.24s 00:00:00.59 Elapsed: 00:00:00.37
# Mc/sec: 1320.03
//
Query:       KOO21652.1  [L=282]
Description: palmitoyltransferase zdhhc15 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.3e-14   53.6   3.0    6.9e-14   52.1   0.3    2.5  2  DHHC      DHHC palmitoyltransferase


Domain annotation for each model (and alignments):
>> DHHC  DHHC palmitoyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.2      0.33   5.9e+03      82      82 ..      33      33 ..      10      62 .. 0.46
   2 !   52.1   0.3   3.8e-18   6.9e-14       5     131 ..      79     236 ..      75     239 .. 0.86

  Alignments for each domain:
  == domain 1  score: -2.7 bits;  conditional E-value: 0.33
        DHHC 82 k 82
                 
  KOO21652.1 33 R 33
                1 PP

  == domain 2  score: 52.1 bits;  conditional E-value: 3.8e-18
        DHHC   5 lkfCstcniykpprskHcrvCnrcvlrfDHhCpwlnnciGerNykyFllfllylllllilalvlllialvklveeekkseflavtllkk.......... 93 
                  ++C+   +  ppr++   + ++ vl+fDH+C wl+  iG +N k+F+l+lly +ll+++   l+l  +++  +          +              
  KOO21652.1  79 AEVCKRTGVSLPPRARL--WDDELVLGFDHFCGWLGVPIGLHNRKFFVLLLLYGSLLTAVGGSLSLHDYLVKSSATPLLPSAGGR---Gggedghpslm 172
                 56788888888888876..55899*********************************9999888887776665555555444444...14569****** PP

        DHHC  94 ..........................llsilllvlsllfllllgllllfhlylilrnlTtieam 131
                                            l++ ++++ +  +++l+++l++h+ l+lrn Tti+ +
  KOO21652.1 173 ssvmvfvspalflyslysgagqlrqlSLEVYTTLFDMATCVVLFVFLVYHVRLVLRNGTTIDPI 236
                 **************************9*********************************9865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (282 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       470  (0.0262145); expected 358.6 (0.02)
Passed bias filter:                      253  (0.0141112); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.21s 00:00:00.62 Elapsed: 00:00:00.36
# Mc/sec: 2331.22
//
Query:       KOO21653.1  [L=455]
Description: hypothetical protein Ctob_000965 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
  ------ inclusion threshold ------
      0.051   13.2   0.3         14    5.4   0.0    2.6  2  CSTF_C          Transcription termination and cleavage factor
       0.17   11.6   1.3       0.28   10.8   1.3    1.3  1  FAM176          FAM176 family
       0.59   10.6   8.1        1.1    9.7   8.1    1.4  1  CENP-B_dimeris  Centromere protein B dimerisation domain
        2.1    7.6   4.8        3.2    7.0   4.8    1.2  1  NOA36           NOA36 protein
        6.9    4.5   6.8        9.1    4.1   6.8    1.1  1  Dicty_REP       Dictyostelium (Slime Mold) REP protein


Domain annotation for each model (and alignments):
>> CSTF_C  Transcription termination and cleavage factor C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.4   0.0    0.0039        14      14      24 ..     373     383 ..     372     385 .. 0.94
   2 ?    5.4   0.0    0.0039        14      14      24 ..     409     419 ..     408     421 .. 0.94

  Alignments for each domain:
  == domain 1  score: 5.4 bits;  conditional E-value: 0.0039
      CSTF_C  14 qLseeqIaaLP 24 
                 qLs+e++a+LP
  KOO21653.1 373 QLSDEALASLP 383
                 8********** PP

  == domain 2  score: 5.4 bits;  conditional E-value: 0.0039
      CSTF_C  14 qLseeqIaaLP 24 
                 qLs+e++a+LP
  KOO21653.1 409 QLSDEALASLP 419
                 8********** PP

>> FAM176  FAM176 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   1.3   7.8e-05      0.28      52      87 ..     221     252 ..     208     276 .. 0.50

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 7.8e-05
      FAM176  52 erlkkkkkklkeesekasededeeeeeeeedssese 87 
                  +++++k + + e    +edede+e+e+e+d+  +e
  KOO21653.1 221 MQNSEAKAEAEAE----DEDEDEDEDEDENDDFWQE 252
                 3333333333333....3333333333333333332 PP

>> CENP-B_dimeris  Centromere protein B dimerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   8.1    0.0003       1.1      12      39 ..     224     248 ..     210     259 .. 0.50

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 0.0003
  CENP-B_dimeris  12 sesesdeeeeeeeedeededeeddeddd 39 
                     se++++ e    e+++edede++de+dd
      KOO21653.1 224 SEAKAEAE---AEDEDEDEDEDEDENDD 248
                     33332222...22233344444444443 PP

>> NOA36  NOA36 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.0   4.8   0.00089       3.2     268     291 ..     225     248 ..     198     261 .. 0.53

  Alignments for each domain:
  == domain 1  score: 7.0 bits;  conditional E-value: 0.00089
       NOA36 268 deddegdedddddddeedddeeed 291
                 + + e++ +d+d+d++ed+de++d
  KOO21653.1 225 EAKAEAEAEDEDEDEDEDEDENDD 248
                 222222222222222222222222 PP

>> Dicty_REP  Dictyostelium (Slime Mold) REP protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.1   6.8    0.0025       9.1     886     910 ..     224     248 ..     209     249 .. 0.58

  Alignments for each domain:
  == domain 1  score: 4.1 bits;  conditional E-value: 0.0025
   Dicty_REP 886 seaeddkedededededEdededed 910
                 sea+ + e ededededEdede++d
  KOO21653.1 224 SEAKAEAEAEDEDEDEDEDEDENDD 248
                 4555555666666666666666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (455 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       863  (0.0481343); expected 358.6 (0.02)
Passed bias filter:                      630  (0.0351386); expected 358.6 (0.02)
Passed Vit filter:                        95  (0.00529868); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.63u 0.27s 00:00:00.90 Elapsed: 00:00:00.43
# Mc/sec: 3199.88
//
Query:       KOO21654.1  [L=592]
Description: acetyltransferase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    4.3e-08   33.9   0.0    1.3e-06   29.1   0.0    2.4  2  Acetyltransf_3  Acetyltransferase (GNAT) domain
    2.5e-05   23.7   1.2     0.0033   16.7   0.5    2.2  2  Hydrolase_4     Serine aminopeptidase, S33
    0.00016   21.4   0.1    0.00033   20.4   0.1    1.5  1  Abhydrolase_1   alpha/beta hydrolase fold
  ------ inclusion threshold ------
      0.059   13.6   0.0       0.11   12.7   0.0    1.5  1  Acetyltransf_1  Acetyltransferase (GNAT) family


Domain annotation for each model (and alignments):
>> Acetyltransf_3  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.1   0.0     0.062   2.8e+02       4      58 ..     257     313 ..     255     343 .. 0.73
   2 !   29.1   0.0   2.9e-10   1.3e-06       5     137 ..     388     520 ..     385     521 .. 0.83

  Alignments for each domain:
  == domain 1  score: 2.1 bits;  conditional E-value: 0.062
  Acetyltransf_3   4 Lrpltee.Dlealf.elrsdpevmry....lpe.pltleeaeewlerawaeeseeegygwai 58 
                     + pl+++ + ++lf ++  dp   r+          ++e+ +++l++ +++   ++g  + +
      KOO21654.1 257 VEPLEADrHCDELFaAFQDDPSHSRWaysfQ-SgFSSREALWAYLAS-LEA---GTGAYFGV 313
                     5688777799***736888999999985533.158888999999985.332...35555665 PP

  == domain 2  score: 29.1 bits;  conditional E-value: 2.9e-10
  Acetyltransf_3   5 rplteeDlealf.elrsdpevmry....lpepltleeaeewlerawaeeseeegygwaivlkdtgviGsvglrdleeedeeaelg.ymlapsfwg 93 
                     +pl  e++ al+ +++   +v+ +    +++  ++++  +wl +  ++    + + +a+++++  ++G + + ++   ++ +e+g + ++p+  +
      KOO21654.1 388 VPLALEHASALHaAYAGAGDVH-WtflsYGPFDSPAALGAWLGPQTTS---ADPLFFALEVNGV-ALGLAAFLRIAAAHGCLEIGhLSFGPQLAR 477
                     6888999999983466666666.4447755568899999999975433...3667799954544.6*******************78899**99* PP

  Acetyltransf_3  94 kGyateavralleyafeelglerlvavidkeNeaSirvleklGf 137
                        atea+  +l++ f++  ++r+++++++++ +S++ + +lGf
      KOO21654.1 478 TPPATEALFLMLQWSFSNG-YRRVEWKCNARHVRSRAAALRLGF 520
                     ****************999.***********************9 PP

>> Hydrolase_4  Serine aminopeptidase, S33
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.5   7.3e-07    0.0033      71     114 ..     130     173 ..     116     182 .. 0.81
   2 !    5.9   0.0    0.0015       6.6     190     237 ..     180     225 ..     173     226 .. 0.92

  Alignments for each domain:
  == domain 1  score: 16.7 bits;  conditional E-value: 7.3e-07
  Hydrolase_4  71 eehpelplfllGhSmGGliallyllrypdkvaglilsaPalkik 114
                  ++ + +  +++G S+GG  a+++++ +p  v+ l+l+aP l   
   KOO21654.1 130 KHAGATSAVIMGKSWGGGEAVAFAAAHPMMVRMLVLVAPSLTDT 173
                  555566899******************************99765 PP

  == domain 2  score: 5.9 bits;  conditional E-value: 0.0015
  Hydrolase_4 190 itlPllllhGeaDkvvdpeasrelyerlgskdktlklypglyHellnE 237
                  ++lP  l+ + +D+v + + s+ +++ ++  d+ l+  p++ H++l E
   KOO21654.1 180 ARLPAVLFWARDDPVRSFGLSQLYVDGMA--DVVLHAVPHGGHQVLDE 225
                  469***********************999..9*************987 PP

>> Abhydrolase_1  alpha/beta hydrolase fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.4   0.1   7.5e-08   0.00033      56     114 ..     118     176 ..      74     201 .. 0.78

  Alignments for each domain:
  == domain 1  score: 20.4 bits;  conditional E-value: 7.5e-08
                    HHHHHHHHHHHHHHCTTSSEEEEEETHHHHHHHHHHHHHGGGEEEEEEESECSSCCHHH CS
  Abhydrolase_1  56 tasvaddldrildalgddkltlvGhSmGGmialayaaeyperVkalvllgaidpaasli 114
                     +++++ l  i  + g  + +++G S+GG  a a+aa +p  V++lvl++++ +  sli
     KOO21654.1 118 SVDTEKLLLGIYKHAGATSAVIMGKSWGGGEAVAFAAAHPMMVRMLVLVAPSLTDTSLI 176
                    556666667778899999*********************************44444443 PP

>> Acetyltransf_1  Acetyltransferase (GNAT) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   2.5e-05      0.11      32     117 .]     436     520 ..     408     520 .. 0.87

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 2.5e-05
                     TCEEEEEEETTEEEEEEEEEEEETTSTTEEEEEEEEESGGGTTSSHHHHHHHHHHHHHHHTTESEEEEEEETTEHHHHHHHHHTTE CS
  Acetyltransf_1  32 aegllvaeedgeliGfisllkipdekggvayieslaVspeyrgkGlGsaLlealeerareegikkivlaveedndaairlYeklGF 117
                     ++ +++ e +g  +G + +l i   + g+ +i  l   p+  +   +++ l  ++++ +++g++++++ + + ++++++   +lGF
      KOO21654.1 436 DPLFFALEVNGVALGLAAFLRIAA-AHGCLEIGHLSFGPQLARTPPATEALFLMLQWSFSNGYRRVEWKCNARHVRSRAAALRLGF 520
                     3456669999************99.99*******************************************999****999999999 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (592 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       249  (0.0138881); expected 358.6 (0.02)
Passed bias filter:                      201  (0.0112109); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.51u 0.23s 00:00:00.74 Elapsed: 00:00:00.40
# Mc/sec: 4467.04
//
Query:       KOO21655.1  [L=205]
Description: hypothetical protein Ctob_000967 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
     0.0063   15.1  12.6     0.0068   15.0  12.6    1.0  1  Macoilin         Macoilin family
  ------ inclusion threshold ------
       0.01   15.2   1.6      0.014   14.8   1.6    1.3  1  WD-3             WD-repeat region
      0.019   15.6  22.4       0.61   10.7   2.5    3.1  3  BST2             Bone marrow stromal antigen 2
      0.034   14.0   6.0       0.12   12.3   0.1    2.6  2  DrrA_P4M         DrrA phosphatidylinositol 4-phosphate bindin
      0.073   13.3   0.8       0.11   12.7   0.8    1.3  1  zf-His_Me_endon  Zinc-binding loop region of homing endonucle
      0.076   13.1  10.9        1.2    9.2   0.1    2.8  2  TolA_bind_tri    TolA binding protein trimerisation
       0.08   13.4  16.5       0.12   12.8  16.5    1.3  1  Fez1             Fez1
       0.11   12.7   6.2        6.4    7.1   0.7    3.2  3  DUF948           Bacterial protein of unknown function (DUF94
       0.24   11.5  10.9      0.062   13.4   6.9    2.0  2  DUF148           Domain of unknown function DUF148
       0.28   11.1   7.3       0.15   12.0   4.2    1.9  2  Sec34            Sec34-like family
       0.31   10.7  20.3       0.11   12.2   5.8    2.2  2  DUF4201          Domain of unknown function (DUF4201)
       0.65   10.1  20.4       0.63   10.1   9.7    2.1  2  UPF0242          Uncharacterised protein family (UPF0242) N-t
       0.83    9.0  13.4       0.23   10.8   2.1    2.3  2  DUF4618          Domain of unknown function (DUF4618)
        1.1    9.4  28.6        3.9    7.5  19.6    2.8  2  TPR_MLP1_2       TPR/MLP1/MLP2-like protein
        1.1    9.1   6.0       0.56   10.0   1.4    2.0  2  Endonuc-BglII    Restriction endonuclease BglII
        1.2    9.1   6.8        3.5    7.7   3.2    2.6  3  DUF1664          Protein of unknown function (DUF1664)
        1.3    9.1  16.6        3.8    7.5   2.3    2.6  2  CENP-F_leu_zip   Leucine-rich repeats of kinetochore protein 
        2.2    7.6  18.2        3.7    6.9   8.7    2.0  2  Cluap1           Clusterin-associated protein-1
        5.6    7.0  11.1       0.68   10.0   1.6    2.1  2  MCU              Mitochondrial calcium uniporter
        6.1    7.4  21.8        6.6    7.3  18.5    2.2  2  APG6_N           Apg6 coiled-coil region
        6.7    7.0  13.2          2    8.6   0.4    3.7  4  JIP_LZII         JNK-interacting protein  leucine zipper II
        9.1    6.1  15.3        9.7    6.0   5.8    2.1  2  DUF724           Protein of unknown function (DUF724)
        9.1    6.3   7.5        6.6    6.7   1.0    2.4  2  DUF4446          Protein of unknown function (DUF4446)


Domain annotation for each model (and alignments):
>> Macoilin  Macoilin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0  12.6   8.8e-06    0.0068     387     537 ..      45     203 ..      15     205 .] 0.76

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 8.8e-06
    Macoilin 387 lpnnql..skkdalvrLeadikkLkaeLqasrqteqelrskissltseerslkselqqlkkendllqtklhelvsa.......kqkdkqtlqqlekrLk 476
                   nn +   + d+  rL++ +  +k +L+ ++q +q+l+ +++ l +e   l ++ ++++++  +l   l+++v +       +   +q l+++e  Lk
  KOO21655.1  45 TKNNAVlkERTDEWSRLNKILTEFKQHLAWQQQRKQQLQRNLERLYNETSWLSNKSEEIRQDTHVLGHELRQAVGElnkvkalRAARQQDLTTIEAELK 143
                 445555334567888********************************9999999999*****9999887776664311111115567899********* PP

    Macoilin 477 eekearaslekqLaeekkrk..keeeetaaravalaaasr.secteslkskkreleaeikkLek 537
                  e +a a++ ++ ++  k+   ++ e  a r    a a r ++ ++ lk + +e+   ++ L++
  KOO21655.1 144 LETNAHAAVSHLCSQANKALlaHTRERDAWR----AEADRaQQESKKLKDRLEEMAYKVNGLTT 203
                 *********9998887776411344444444....55556455678899999999999988876 PP

>> WD-3  WD-repeat region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.8   1.6   1.8e-05     0.014      48     153 ..      39     148 ..      17     174 .. 0.74

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 1.8e-05
                 TTCEEETTTS--.....-TT--HHHHHHHHHHHS-----------.-G........GG--HHHHHHHHHS-SS-E..EEE-GGG-EEEEEEETTE.EEE CS
        WD-3  48 kLktkleknekilkqrlqqskdledFlqelkellesekalkskkeses.......lpsakyyarlleeleklgwekllqidedlksiklkakdssgreH 139
                 +L+++l+kn+++lk+r  + + l + l+e+k+ l+ +++ k++ +++           ++  +++ ++ + lg e l+q   +l+++k      +++  
  KOO21655.1  39 ELAQTLTKNNAVLKERTDEWSRLNKILTEFKQHLAWQQQRKQQLQRNLerlynetSWLSNKSEEIRQDTHVLGHE-LRQAVGELNKVKALRAARQQDLT 136
                 7999*******************************7777777766554667666666777788888888888888.88888888887755444444444 PP

                 EEEEETTT.....- CS
        WD-3 140 llelklkskypael 153
                  +e +lk   ++++
  KOO21655.1 137 TIEAELKL--ETNA 148
                 44444444..4443 PP

>> BST2  Bone marrow stromal antigen 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   6.9    0.0015       1.2      22      81 ..      40      99 ..      36     102 .. 0.93
   2 ?   10.7   2.5   0.00078      0.61      13      60 ..     101     148 ..      97     162 .. 0.90
   3 ?    4.1   1.9      0.09        70      43      89 ..     156     198 ..     145     200 .. 0.64

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.0015
                HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
        BST2 22 LerqLtqaqeslreaeaqaatcnqtvvtLkasLekekaqsqkqqakvqelqgeikkLnqk 81
                L + Lt+ +  l+e  ++++  n+++ + k+ L  ++ ++q+ q++++ l +e   L +k
  KOO21655.1 40 LAQTLTKNNAVLKERTDEWSRLNKILTEFKQHLAWQQQRKQQLQRNLERLYNETSWLSNK 99
                6789************************************************99888765 PP

  == domain 2  score: 10.7 bits;  conditional E-value: 0.00078
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
        BST2  13 qecrnvtrlLerqLtqaqeslreaeaqaatcnqtvvtLkasLekekaq 60 
                 +e+r+ t+ L ++L+qa  +l++ +a  a+ +q + t++a L+ e+  
  KOO21655.1 101 EEIRQDTHVLGHELRQAVGELNKVKALRAARQQDLTTIEAELKLETNA 148
                 799***************************************998765 PP

  == domain 3  score: 4.1 bits;  conditional E-value: 0.09
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC CS
        BST2  43 cnqtvvtLkasLekekaqsqkqqakvqelqgeikkLnqkLqdaeaev 89 
                 c+q      ++L  ++ +   ++a++   q+e kkL+++L++   +v
  KOO21655.1 156 CSQAN----KALLAHTRERDAWRAEADRAQQESKKLKDRLEEMAYKV 198
                 44444....44444455555557777888889999999998877665 PP

>> DrrA_P4M  DrrA phosphatidylinositol 4-phosphate binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.1   0.3     0.053        41      32      59 ..      62      90 ..      60     101 .. 0.79
   2 ?   12.3   0.1   0.00015      0.12      51     100 ..     114     164 ..     110     167 .. 0.72

  Alignments for each domain:
  == domain 1  score: 4.1 bits;  conditional E-value: 0.053
                HHHHHHHHHHHTT.--SHHHHHHHHHHHH CS
    DrrA_P4M 32 tkILkdfKdklee.istkeeLeklvkefk 59
                +kIL +fK++l+   + k++L++  +++ 
  KOO21655.1 62 NKILTEFKQHLAWqQQRKQQLQRNLERLY 90
                58*********961457888888777765 PP

  == domain 2  score: 12.3 bits;  conditional E-value: 0.00015
                 HHHHHHHHHTSHHHHHHHS-SSHHHHH..HT---HHHHHHHHHHHHHHHTTC CS
    DrrA_P4M  51 LeklvkefkkseeykilktgQglftrl..fglkTssvkalekivkeaekeik 100
                 L + v e++k +  +  + +Q+l+t    ++l+T++++a+ +++++a+k + 
  KOO21655.1 114 LRQAVGELNKVKALRA-ARQQDLTTIEaeLKLETNAHAAVSHLCSQANKALL 164
                 5555566666555553.4567766655568899**************99885 PP

>> zf-His_Me_endon  Zinc-binding loop region of homing endonuclease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.8   0.00014      0.11       7      75 ..      80     160 ..      73     190 .. 0.79

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 0.00014
  zf-His_Me_endon   7 snkaskkksgykklnlrntapdk..kgrkvyvhhl.alvaaersvepis....ellkkvsqekk.....akevsHlCgnge 75 
                      ++ + + ++ y+++++ ++++++  ++++v+ h+l  +v + ++v+ ++    + l+++ +e k      + vsHlC +++
       KOO21655.1  80 QQLQRNLERLYNETSWLSNKSEEirQDTHVLGHELrQAVGELNKVKALRaarqQDLTTIEAELKletnaHAAVSHLCSQAN 160
                      4455567788999999999666678999999***97777777766666566677899998887778887899*****9876 PP

>> TolA_bind_tri  TolA binding protein trimerisation
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.4   7.5     0.052        40       6      51 ..      65     110 ..      54     134 .. 0.53
   2 ?    9.2   0.1    0.0016       1.2      27      51 ..     177     201 ..     162     204 .. 0.90

  Alignments for each domain:
  == domain 1  score: 4.4 bits;  conditional E-value: 0.052
  TolA_bind_tri   6 varLErilearsqlllelqqqlealqqelreLRGqiEelqyqleql 51 
                    +++  + l+ ++q   +lq++le+l +e + L  + Ee + +   l
     KOO21655.1  65 LTEFKQHLAWQQQRKQQLQRNLERLYNETSWLSNKSEEIRQDTHVL 110
                    3444444444555555555555555555555555555544444444 PP

  == domain 2  score: 9.2 bits;  conditional E-value: 0.0016
  TolA_bind_tri  27 lealqqelreLRGqiEelqyqleql 51 
                     ++ qqe ++L+  +Ee++y+++ l
     KOO21655.1 177 ADRAQQESKKLKDRLEEMAYKVNGL 201
                    6899*****************9865 PP

>> Fez1  Fez1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8  16.5   0.00015      0.12      37     179 ..      48     187 ..      33     203 .. 0.71

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 0.00015
        Fez1  37 kaqlrelrakleekeeeikeleesleektlelevcenelqrkkseaellrekvekleeelkelreelselsleeeeaalesdeakaqrqe.aeeleelk 134
                  a l+e + + ++ ++ ++e++++l  +++  ++++ +l+r  +e++ l++k e++ ++++ l +el+++  e  ++    ++ +a rq+  +++e++ 
  KOO21655.1  48 NAVLKERTDEWSRLNKILTEFKQHLAWQQQRKQQLQRNLERLYNETSWLSNKSEEIRQDTHVLGHELRQAVGE-LNK---VKALRAARQQdLTTIEAEL 142
                 4567777788888888888888888888888999999999999999999999999999999999999885533.232...3333334443122333333 PP

        Fez1 135 reverlraeLkeerqkkeeqassFeqERrtWqeeKekVirYqkqL 179
                 +   + +a++++   + ++   ++ +ER  W+ e ++  +  k+L
  KOO21655.1 143 KLETNAHAAVSHLCSQANKALLAHTRERDAWRAEADRAQQESKKL 187
                 333345667777778889999*************99976666665 PP

>> DUF948  Bacterial protein of unknown function (DUF948)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.1   0.7    0.0083       6.4      21      75 ..      37      94 ..      31     105 .. 0.71
   2 ?    5.3   0.6     0.031        24      32      65 ..      76     109 ..      60     144 .. 0.59
   3 ?    4.7   0.1     0.048        37      26      76 ..     154     204 ..     143     205 .] 0.67

  Alignments for each domain:
  == domain 1  score: 7.1 bits;  conditional E-value: 0.0083
      DUF948 21 llklkktldeaaatieele...kqvdpilkevedllakvnelledvneklekvdplte 75
                +l+l++tl++++a ++e +   +++++il+e ++ la  ++  +++++ le++ + t+
  KOO21655.1 37 VLELAQTLTKNNAVLKERTdewSRLNKILTEFKQHLAWQQQRKQQLQRNLERLYNETS 94
                6778888888888888888666678888888888888888888888888887766555 PP

  == domain 2  score: 5.3 bits;  conditional E-value: 0.031
      DUF948  32 aatieelekqvdpilkevedllakvnelledvne 65 
                 +++ ++l+++++ + +e+  l +k++e+ +d + 
  KOO21655.1  76 QQRKQQLQRNLERLYNETSWLSNKSEEIRQDTHV 109
                 4555566666666666666666666665555443 PP

  == domain 3  score: 4.7 bits;  conditional E-value: 0.048
      DUF948  26 ktldeaaatieelekqvdpilkevedllakvnelledvneklekvdpltea 76 
                 ++ ++a++++   +++ d+   e++++ +++++l + ++e   kv+ lt+a
  KOO21655.1 154 HLCSQANKALLAHTRERDAWRAEADRAQQESKKLKDRLEEMAYKVNGLTTA 204
                 555666666666666667777777777777777777777777777777665 PP

>> DUF148  Domain of unknown function DUF148
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   6.9   7.9e-05     0.062      14      92 ..      45     123 ..      36     138 .. 0.90
   2 ?   -0.9   0.2       2.2   1.7e+03      50      62 ..     143     155 ..     122     186 .. 0.63

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 7.9e-05
      DUF148  14 nltiaeieeqleawaekygvtdeykefeakvkaqkeevkknvtavisnLssvqekleaIldnkslTrkeqkeaieelkk 92 
                 + + a ++e++++w   +++ +e+k++ a ++++k++++ n ++  ++ s  ++k e+I +++    +e ++a+ el k
  KOO21655.1  45 TKNNAVLKERTDEWSRLNKILTEFKQHLAWQQQRKQQLQRNLERLYNETSWLSNKSEEIRQDTHVLGHELRQAVGELNK 123
                 34455689*****************************************************************999975 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 2.2
      DUF148  50 evkknvtavisnL 62 
                 +++ n+ a++s L
  KOO21655.1 143 KLETNAHAAVSHL 155
                 3444555555554 PP

>> Sec34  Sec34-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   4.2   0.00019      0.15       3      85 ..      42     125 ..      40     143 .. 0.85
   2 ?   -0.7   0.0       1.5   1.2e+03      12      41 ..     170     199 ..     159     204 .. 0.56

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 0.00019
       Sec34   3 dqLeskeeecdelleqtdealeqLeeleekfksvsektsslheaceqlleeqkrleelaeeieekLkyF.eeldpitrkLnspg 85 
                 ++L+++++ ++e  ++ +++++ L+e ++     +++ ++l+++ e+l++e++ l++ +eei+++ ++   el ++  +Ln+ +
  KOO21655.1  42 QTLTKNNAVLKERTDEWSRLNKILTEFKQHLAWQQQRKQQLQRNLERLYNETSWLSNKSEEIRQDTHVLgHELRQAVGELNKVK 125
                 67899999999999999**********************************************998875345666666666655 PP

  == domain 2  score: -0.7 bits;  conditional E-value: 1.5
       Sec34  12 cdelleqtdealeqLeeleekfksvsekts 41 
                  d+  +++d+a+++ ++l+++ ++++ k +
  KOO21655.1 170 RDAWRAEADRAQQESKKLKDRLEEMAYKVN 199
                 555555555566666666655555555554 PP

>> DUF4201  Domain of unknown function (DUF4201)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   5.8   0.00014      0.11      66     139 ..      38     111 ..      35     114 .. 0.92
   2 ?    4.3   6.6     0.039        30      77     134 ..     133     197 ..     114     202 .. 0.76

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 0.00014
     DUF4201  66 krlkkkttktvhalthlkeklhmleselselkkelkekeerlaklrkelykvklerdklrkqneklkqqggllr 139
                 ++l ++ tk+  +l++  +  + l++ l e k+ l  +++r+++l+++l+++ +e ++l ++ e+++q+++ l+
  KOO21655.1  38 LELAQTLTKNNAVLKERTDEWSRLNKILTEFKQHLAWQQQRKQQLQRNLERLYNETSWLSNKSEEIRQDTHVLG 111
                 6788899999999999999999**********************************************987765 PP

  == domain 2  score: 4.3 bits;  conditional E-value: 0.039
     DUF4201  77 halthlkeklh.......mleselselkkelkekeerlaklrkelykvklerdklrkqneklkqq 134
                 + lt++   l+       ++++ +s+++k l   ++++++ r+e  ++++e +kl+++ e++ ++
  KOO21655.1 133 QDLTTIEAELKletnahaAVSHLCSQANKALLAHTRERDAWRAEADRAQQESKKLKDRLEEMAYK 197
                 4444444444444444458899999999******************************9999886 PP

>> UPF0242  Uncharacterised protein family (UPF0242) N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   9.7   0.00081      0.63      79     171 ..      39     131 ..      32     137 .. 0.87
   2 ?    5.9   4.4     0.016        12      80     142 ..     131     193 ..     118     202 .. 0.84

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.00081
     UPF0242  79 eldeglktkeealeelqeeeeeLkeeldakeeelerlkeenqqLqekleaiaedfeelkleleeqLaekqellqeyqetieeqrsvlekrqdq 171
                 el + l++++  l+e+++e  +L++ l + ++ l+  ++++qqLq  le   ++ + l+ ++ee  +  + l +e+++ + e+ +v   r ++
  KOO21655.1  39 ELAQTLTKNNAVLKERTDEWSRLNKILTEFKQHLAWQQQRKQQLQRNLERLYNETSWLSNKSEEIRQDTHVLGHELRQAVGELNKVKALRAAR 131
                 666778899999**************************************************9988888999999999999988765555555 PP

  == domain 2  score: 5.9 bits;  conditional E-value: 0.016
     UPF0242  80 ldeglktkeealeelqeeeeeLkeeldakeeelerlkeenqqLqekleaiaedfeelklelee 142
                  +++l+t+e +l+  ++ +    +  ++ +++l  +++e    + ++  ++++ ++lk  lee
  KOO21655.1 131 RQQDLTTIEAELKLETNAHAAVSHLCSQANKALLAHTRERDAWRAEADRAQQESKKLKDRLEE 193
                 2368999999999999999999999*****************************999999987 PP

>> DUF4618  Domain of unknown function (DUF4618)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.3   3.7     0.059        46     173     223 ..      43      93 ..      34     110 .. 0.60
   2 ?   10.8   2.1    0.0003      0.23     145     220 ..     129     202 ..     115     205 .] 0.75

  Alignments for each domain:
  == domain 1  score: 3.3 bits;  conditional E-value: 0.059
     DUF4618 173 tlkatqeaLlqktlenqvlkkeiekfrefieeleeeipeLkaeveqLqaqa 223
                 tl++++ +L+++t e ++l+k + +f+++    +++ ++L++++e+L +++
  KOO21655.1  43 TLTKNNAVLKERTDEWSRLNKILTEFKQHLAWQQQRKQQLQRNLERLYNET 93 
                 455556666666666666666666666666555555555555555555544 PP

  == domain 2  score: 10.8 bits;  conditional E-value: 0.0003
     DUF4618 145 elikevleklskkiqkkkekllkslaektlkatqeaLlqktlenqvlkkeiekfrefieeleeeipeLkaeveqLq 220
                   +++ l++++++++ +     ++++ +  ++ ++aLl++t+e+ + + e ++ +++ ++l+ +++e+ ++v+ L 
  KOO21655.1 129 AARQQDLTTIEAELKLE--TNAHAAVSHLCSQANKALLAHTRERDAWRAEADRAQQESKKLKDRLEEMAYKVNGLT 202
                 33344444444444333..3346678888999***************************************99886 PP

>> TPR_MLP1_2  TPR/MLP1/MLP2-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.7   0.4     0.018        14      96     123 ..      39      66 ..      33      68 .. 0.88
   2 ?    7.5  19.6     0.005       3.9       3     115 ..      79     194 ..      77     201 .. 0.95

  Alignments for each domain:
  == domain 1  score: 5.7 bits;  conditional E-value: 0.018
  TPR_MLP1_2  96 eqkeelekelselekriedlneqNklLh 123
                 e  ++l k+ + l++r ++ +  Nk+L 
  KOO21655.1  39 ELAQTLTKNNAVLKERTDEWSRLNKILT 66 
                 567899********************96 PP

  == domain 2  score: 7.5 bits;  conditional E-value: 0.005
  TPR_MLP1_2   3 lksleeeikslkeekeeaeaklqklqedlekqaeiakeaqqkYerelvkhaedvkelqalreel...nelkaeiaelkaeaesakaeleeseesweeqk 98 
                 +++l+ ++++l +e + + +k +++++d      ++++a     +   + a+  ++l+++ +el    ++ a ++ l ++a++a  ++ +++ +w  + 
  KOO21655.1  79 KQQLQRNLERLYNETSWLSNKSEEIRQDTHVLGHELRQAVGELNKVKALRAARQQDLTTIEAELkleTNAHAAVSHLCSQANKALLAHTRERDAWRAEA 177
                 789*************************************************************87778889999************************ PP

  TPR_MLP1_2  99 eelekelselekriedl 115
                 ++ ++e ++l+ r+e++
  KOO21655.1 178 DRAQQESKKLKDRLEEM 194
                 ***************97 PP

>> Endonuc-BglII  Restriction endonuclease BglII
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   1.4   0.00072      0.56       3      62 ..      48     103 ..      46     143 .. 0.80
   2 ?    1.5   0.2       0.3   2.4e+02       1      51 [.     147     197 ..     147     200 .. 0.92

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.00072
  Endonuc-BglII   3 aevlkekapnelqeilevLkefrlslseikssgenksdvkkrikellaakgWeeekrika 62 
                    ++vlke + +e+  ++++L+ef+ +l++ ++   +k +++ ++++l ++  W ++k+ ++
     KOO21655.1  48 NAVLKE-RTDEWSRLNKILTEFKQHLAWQQQ---RKQQLQRNLERLYNETSWLSNKSEEI 103
                    679998.99**************99998764...555666899*********88888766 PP

  == domain 2  score: 1.5 bits;  conditional E-value: 0.3
  Endonuc-BglII   1 nAaevlkekapnelqeilevLkefrlslseikssgenksdvkkrikellaa 51 
                    nA++ + + ++++ +++l+  +e ++ ++e  + +++ +++k+r++e++++
     KOO21655.1 147 NAHAAVSHLCSQANKALLAHTRERDAWRAEADRAQQESKKLKDRLEEMAYK 197
                    7899999999******************************9***9999875 PP

>> DUF1664  Protein of unknown function (DUF1664)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.7   3.2    0.0045       3.5      46     121 ..      61     139 ..      32     142 .. 0.76
   2 ?    6.0   0.5     0.014        11      50     109 ..      96     155 ..      91     165 .. 0.84
   3 ?    1.6   0.1      0.34   2.7e+02      92     120 ..     173     201 ..     150     204 .. 0.67

  Alignments for each domain:
  == domain 1  score: 7.7 bits;  conditional E-value: 0.0045
     DUF1664  46 vskqleqvsesl...aatkrhLssridrvdkkldeqkeiskeikeevtevredlseigedvesvkeaveglesklerie 121
                 + k l++++++l   ++ k++L+++++r+ ++    ++ s+ei+++ + + ++l++   ++++vk++    ++ l++ie
  KOO21655.1  61 LNKILTEFKQHLawqQQRKQQLQRNLERLYNETSWLSNKSEEIRQDTHVLGHELRQAVGELNKVKALRAARQQDLTTIE 139
                 4455555555552215678889999999999999999999999999999999999999999988887666666666666 PP

  == domain 2  score: 6.0 bits;  conditional E-value: 0.014
     DUF1664  50 leqvseslaatkrhLssridrvdkkldeqkeiskeikeevtevredlseigedvesvkea 109
                 l + se++++  + L +++ +   +l+++k++ ++ ++++t+++ +l+   +   +v+++
  KOO21655.1  96 LSNKSEEIRQDTHVLGHELRQAVGELNKVKALRAARQQDLTTIEAELKLETNAHAAVSHL 155
                 7788999************************************99998766666666655 PP

  == domain 3  score: 1.6 bits;  conditional E-value: 0.34
     DUF1664  92 vredlseigedvesvkeavegleskleri 120
                  r + ++ +++++++k+  e+++ k++ +
  KOO21655.1 173 WRAEADRAQQESKKLKDRLEEMAYKVNGL 201
                 45566666777777777777777776654 PP

>> CENP-F_leu_zip  Leucine-rich repeats of kinetochore protein Cenp-F/LEK1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.6  10.4      0.08        62      13     115 ..      52     140 ..      37     164 .. 0.52
   2 ?    7.5   2.3    0.0048       3.8      33      75 ..     163     205 .]     133     205 .] 0.78

  Alignments for each domain:
  == domain 1  score: 3.6 bits;  conditional E-value: 0.08
  CENP-F_leu_zip  13 KeserkadsLkdkvenLerelemseenqekvileaEtskaevetlkeeieelaeelreleldLvalrsekeeLekelqkkqervseLeslnssle 107
                     Ke   + + L+    + ++ l  +++ ++++              + ++e+l +e++ l+ + +++r++   L  el++   + +  ++l+   +
      KOO21655.1  52 KERTDEWSRLNKILTEFKQHLAWQQQRKQQL--------------QRNLERLYNETSWLSNKSEEIRQDTHVLGHELRQAVGELNKVKALRAARQ 132
                     4444444444444444445555555555555..............55555555555555555555555555555555555555555555555555 PP

  CENP-F_leu_zip 108 nlleekEq 115
                     + l   E+
      KOO21655.1 133 QDLTTIEA 140
                     55555554 PP

  == domain 2  score: 7.5 bits;  conditional E-value: 0.0048
  CENP-F_leu_zip  33 lemseenqekvileaEtskaevetlkeeieelaeelreleldL 75 
                     l    +++++   ea+ +++e ++lk+ +ee+a + + l++ L
      KOO21655.1 163 LLAHTRERDAWRAEADRAQQESKKLKDRLEEMAYKVNGLTTAL 205
                     5566677888889999********************9998765 PP

>> Cluap1  Clusterin-associated protein-1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.5   5.0     0.013       9.9     138     209 ..      39     107 ..       2     126 .. 0.56
   2 ?    6.9   8.7    0.0048       3.7     136     219 ..     107     194 ..     100     198 .. 0.79

  Alignments for each domain:
  == domain 1  score: 5.5 bits;  conditional E-value: 0.013
      Cluap1 138 sLydlLekevelreartkalsrqleleeiekalkeaikkvkeelektkkalenlesdeanLeakiekkkqel 209
                 +L + L k++ + ++rt+  sr   l++i ++ k+++  ++++ ++++++le+l ++ + L++k e  +q+ 
  KOO21655.1  39 ELAQTLTKNNAVLKERTDEWSR---LNKILTEFKQHLAWQQQRKQQLQRNLERLYNETSWLSNKSEEIRQDT 107
                 3444444444444444444433...44444555555555555555555555555555555555555555443 PP

  == domain 2  score: 6.9 bits;  conditional E-value: 0.0048
      Cluap1 136 gasLydlLekeve.lreartkalsrqleleeiekalk...eaikkvkeelektkkalenlesdeanLeakiekkkqeleraqkrLqsl 219
                    L + L++ v  l + +   ++rq++l++ie++lk   +a  +v++ +++ +kal   +++ ++  a  ++ +qe+ + ++rL+++
  KOO21655.1 107 THVLGHELRQAVGeLNKVKALRAARQQDLTTIEAELKletNAHAAVSHLCSQANKALLAHTRERDAWRAEADRAQQESKKLKDRLEEM 194
                 555555555554337777788889**********99843344556788899**********************************987 PP

>> MCU  Mitochondrial calcium uniporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   1.6   0.00087      0.68      18      85 ..      38     108 ..      23     117 .. 0.74
   2 ?    2.0   2.7      0.25     2e+02      27      74 ..     144     195 ..     107     204 .. 0.55

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.00087
                 XXXXXXXXX......XXXXXXXXXXXXXXXXX-SSSSSSTSSSSSHHHHHHHHHHHHH-SHHHHHHHHTCCCGG CS
         MCU  18 ialstllee......eeakvllrvkqlvkalesalnveeeqlkkereleekleelreelepleekkeeidekAe 85 
                 + l ++l++      e++ + +r+++++ + +++l  +   ++++++l+++le+l +e + l +k eei++  +
  KOO21655.1  38 LELAQTLTKnnavlkERTDEWSRLNKILTEFKQHLAWQ---QQRKQQLQRNLERLYNETSWLSNKSEEIRQDTH 108
                 44444222223444345678888888888888888555...899999******************999998765 PP

  == domain 2  score: 2.0 bits;  conditional E-value: 0.25
                 XXXXXXXXXXXXXXXXX-SS..SSSSTS..SSSSHHHHHHHHHHHHH-SHHH CS
         MCU  27 eeakvllrvkqlvkalesal..nveeeq..lkkereleekleelreeleple 74 
                  e++ +  v +l ++ ++al  +++e +  + +  +++++ ++l+++le++ 
  KOO21655.1 144 LETNAHAAVSHLCSQANKALlaHTRERDawRAEADRAQQESKKLKDRLEEMA 195
                 3356777777777777777755222222002223334444455555555554 PP

>> APG6_N  Apg6 coiled-coil region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.3  18.5    0.0085       6.6       9     131 ..      63     182 ..      40     184 .. 0.91
   2 ?    1.7   6.0      0.46   3.6e+02      63     104 ..     156     197 ..     139     205 .] 0.59

  Alignments for each domain:
  == domain 1  score: 7.3 bits;  conditional E-value: 0.0085
      APG6_N   9 lLleeldkqleqaekerdaYeeflkklkkekkeeekqdeeleeleeeleklekeeeelleeLkelekereeleaelaaleeelealeeeeerfwreyne 107
                  +l+e++++l+ +++ ++++++ l++l +e++      ++ ee++++   l  e ++++ eL+++++ r++ +++l ++e+el+   +  ++  +  ++
  KOO21655.1  63 KILTEFKQHLAWQQQRKQQLQRNLERLYNETSWL---SNKSEEIRQDTHVLGHELRQAVGELNKVKALRAARQQDLTTIEAELKLETNAHAAVSHLCSQ 158
                 5788999999999999999999999999996554...478899****************************************9888888888888888 PP

      APG6_N 108 lqlelleleeeldsleaqyehaqn 131
                  +  ll +  e+d+  a+ + aq+
  KOO21655.1 159 ANKALLAHTRERDAWRAEADRAQQ 182
                 99************9999999987 PP

  == domain 2  score: 1.7 bits;  conditional E-value: 0.46
      APG6_N  63 eeelleeLkelekereeleaelaaleeelealeeeeerfwre 104
                  +++ + L +  +er++ +ae   +++e+++l++  e+   +
  KOO21655.1 156 CSQANKALLAHTRERDAWRAEADRAQQESKKLKDRLEEMAYK 197
                 445555566666666666666666666666666665555444 PP

>> JIP_LZII  JNK-interacting protein  leucine zipper II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.4   0.7      0.94   7.3e+02      34      52 ..      54      72 ..      39      94 .. 0.53
   2 ?    1.2   1.1      0.55   4.3e+02      29      56 ..      80     107 ..      60     117 .. 0.56
   3 ?    3.2   1.3      0.13        98      46      71 .]     118     143 ..      96     143 .. 0.68
   4 ?    8.6   0.4    0.0026         2      39      67 ..     167     195 ..     160     199 .. 0.92

  Alignments for each domain:
  == domain 1  score: 0.4 bits;  conditional E-value: 0.94
    JIP_LZII 34 rvdeLtsereiLreElesl 52
                r+de +  ++iL+e  + l
  KOO21655.1 54 RTDEWSRLNKILTEFKQHL 72
                4555555555554333333 PP

  == domain 2  score: 1.2 bits;  conditional E-value: 0.55
    JIP_LZII  29 ddLIarvdeLtsereiLreEleslqkak 56 
                 + L   ++ L +e + L++  e++++  
  KOO21655.1  80 QQLQRNLERLYNETSWLSNKSEEIRQDT 107
                 4444445555555555555555555444 PP

  == domain 3  score: 3.2 bits;  conditional E-value: 0.13
    JIP_LZII  46 reEleslqkakerlesrikelEeelk 71 
                   El+++++ +++ ++ ++ +E+elk
  KOO21655.1 118 VGELNKVKALRAARQQDLTTIEAELK 143
                 45777777778888888888888886 PP

  == domain 4  score: 8.6 bits;  conditional E-value: 0.0026
    JIP_LZII  39 tsereiLreEleslqkakerlesrikelE 67 
                 t er++ r E ++ q+++++l++r++e+ 
  KOO21655.1 167 TRERDAWRAEADRAQQESKKLKDRLEEMA 195
                 78999*********************997 PP

>> DUF724  Protein of unknown function (DUF724)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.4   2.5     0.018        14     116     180 ..      42     106 ..      32     116 .. 0.65
   2 ?    6.0   5.8     0.012       9.7      90     173 ..     114     197 ..     111     203 .. 0.89

  Alignments for each domain:
  == domain 1  score: 5.4 bits;  conditional E-value: 0.018
      DUF724 116 kkieeeesekrkleeeidelekkilelerqlallkekkeaadkeiarlkseaekleeeledveqe 180
                 + ++++++  ++  +e + l+k   e++++la  +++k++ ++++ rl  e++ l+++ e+++q+
  KOO21655.1  42 QTLTKNNAVLKERTDEWSRLNKILTEFKQHLAWQQQRKQQLQRNLERLYNETSWLSNKSEEIRQD 106
                 44555555566666666677777777777777777777777777777777776666666665554 PP

  == domain 2  score: 6.0 bits;  conditional E-value: 0.012
      DUF724  90 lqsrlnkLlslkdeqtklleerkklekkieeeesekrkleeeidelekkilelerqlallkekkeaadkeiarlkseaekleee 173
                 l++ + +L ++k  ++  ++ +  +e +++ e+++++ +++  ++ +k+ l + r++++ +++ ++a++e ++lk   e++  +
  KOO21655.1 114 LRQAVGELNKVKALRAARQQDLTTIEAELKLETNAHAAVSHLCSQANKALLAHTRERDAWRAEADRAQQESKKLKDRLEEMAYK 197
                 56677788889999999999999999**************************************99999999999988877665 PP

>> DUF4446  Protein of unknown function (DUF4446)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.7   1.0    0.0085       6.6      25      83 ..      62     122 ..      55     126 .. 0.78
   2 ?    3.1   0.4      0.11        87      43      82 ..     159     198 ..     135     202 .. 0.79

  Alignments for each domain:
  == domain 1  score: 6.7 bits;  conditional E-value: 0.0085
     DUF4446  25 kklkkkykklmk..gkdgksleellkekleeveelkeeseelekeieeleeklkkslqkvg 83 
                 +k+ +++k+ +   ++++++l++ l++ ++e+  l+++see++++ + l ++l++++ +++
  KOO21655.1  62 NKILTEFKQHLAwqQQRKQQLQRNLERLYNETSWLSNKSEEIRQDTHVLGHELRQAVGELN 122
                 4444444443333267999********************************9999987665 PP

  == domain 2  score: 3.1 bits;  conditional E-value: 0.11
     DUF4446  43 leellkekleeveelkeeseelekeieeleeklkkslqkv 82 
                  +++l  +++e ++ ++e ++ ++e ++l+++l+++  kv
  KOO21655.1 159 ANKALLAHTRERDAWRAEADRAQQESKKLKDRLEEMAYKV 198
                 4566777888888888888888888888888888887776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (205 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2340  (0.130515); expected 358.6 (0.02)
Passed bias filter:                      725  (0.0404373); expected 358.6 (0.02)
Passed Vit filter:                        93  (0.00518713); expected 17.9 (0.001)
Passed Fwd filter:                        38  (0.00211947); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              23  [number of targets reported over threshold]
# CPU time: 0.72u 0.30s 00:00:01.02 Elapsed: 00:00:00.46
# Mc/sec: 1351.11
//
Query:       KOO21656.1  [L=138]
Description: hypothetical protein Ctob_000938 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (138 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       349  (0.0194657); expected 358.6 (0.02)
Passed bias filter:                      249  (0.0138881); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.27s 00:00:00.63 Elapsed: 00:00:00.41
# Mc/sec: 1015.04
//
Query:       KOO21657.1  [L=726]
Description: hypothetical protein Ctob_000939 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.3e-32  111.7   5.3    2.9e-09   36.9   0.6    7.0  6  TIG         IPT/TIG domain
    6.7e-13   48.4   0.0    0.00021   21.2   0.0    5.0  6  TIG_plexin  TIG domain


Domain annotation for each model (and alignments):
>> TIG  IPT/TIG domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.9   0.6   3.2e-13   2.9e-09       2      85 .]      17     109 ..      16     109 .. 0.90
   2 !    6.8   0.0    0.0008       7.2       3      40 ..     117     163 ..     116     230 .. 0.83
   3 !    4.8   0.0    0.0034        31       4      82 ..     239     364 ..     237     367 .. 0.69
   4 !   19.8   0.0   6.8e-08   0.00061       4      75 ..     376     458 ..     374     470 .. 0.84
   5 !   25.7   0.0     1e-09   9.1e-06       4      85 .]     483     579 ..     480     579 .. 0.90
   6 !   13.0   0.0   9.1e-06     0.081       3      73 ..     587     674 ..     586     694 .. 0.80

  Alignments for each domain:
  == domain 1  score: 36.9 bits;  conditional E-value: 3.2e-13
         TIG   2 vissisPnsgsasgGttititGtnFgtnssdssvtiggtpctvtasvssttlvcttPpgp...........sgllnvsvlvdgaqlrsdnttftY 85 
                 v+ s++P  g++ gGt +t+tG  F  +  d+++++g++++++    ++tt++c +P+ +             ++++ v ++g   + ++++ftY
  KOO21657.1  17 VVASLFPLGGPFTGGTAVTVTGIAF-QDLGDVKCRFGEDEVQAL-LANETTIECASPGCTsptcvrgqeetHVTVPLEVSMNGVTFTGSGLQFTY 109
                 67899********************.******************.*************9999999**9964336666677777889999999998 PP

  == domain 2  score: 6.8 bits;  conditional E-value: 0.0008
         TIG   3 issisPnsgsasgGttititGtnF.........gtnssdssvtiggt 40 
                 +s i+P+ g+a+g t ++++G+ +         g   + +++++g++
  KOO21657.1 117 VSHITPAGGPAAGATPLLVRGHALrdlssgtamGVRLQGLKCKFGEN 163
                 6889******************9998777777766666777776665 PP

  == domain 3  score: 4.8 bits;  conditional E-value: 0.0034
         TIG   4 ssisPnsgsasgGttititGtnF......gtnssdssvtiggtpctvta.....svssttl.........................vcttPpgp..... 61 
                 s ++P  g++ gGt +t+  t+       g +++ + +++ +t ++ +      +     +                          c +Pp p     
  KOO21657.1 239 SRLHPLGGPIHGGTVLTVYLTDArllvdlGGDAHGVLCRFTHTRTVGVLgferqH-----VvhevvnasltdcrgqrtcgagwgavSCRVPPLPppldt 332
                 5678888999999999988666677777777777777777777776666544441.....124444555568888888888888888888888888888 PP

         TIG  62 ..........sg.llnvsvlvdgaqlrsdntt 82 
                           +g ++nv v+v+g + + ++++
  KOO21657.1 333 qlspqyessfDGrDVNVEVTVNGFDFTDGGLP 364
                 88888888886668899998888555555555 PP

  == domain 4  score: 19.8 bits;  conditional E-value: 6.8e-08
         TIG   4 ssisPnsgsasgGttititGtnFgtnssdssvtiggtpctvta.svssttlvcttPpgp..........sgllnvsvlvdg.aq 75 
                   i+P+ g+  g+t+++ +G  F ++  d+++++g  + +v+a    +++++c++P++           s+ ++v ++ +g ++
  KOO21657.1 376 HRIEPSGGPLTGNTSLVARGLRF-SSLGDVRCRFGPLNEEVNAtIDEEQSIRCVSPAHWlhadnvvplsSQRVEVELTLNGqDY 458
                 679********************.***********766666665999999*********9999999997778888888888533 PP

  == domain 5  score: 25.7 bits;  conditional E-value: 1e-09
         TIG   4 ssisPnsgsasgGttititGtnFgtnssdssvtiggtpctvtasvssttlvcttPpgp..............sgllnvsvlvdg..aqlrsdnttftY 85 
                   ++P+ g+ +gGt++ ++Gt+F +++  + +++gg+  +  + v+  +++c++P ++                + +v v+ +g   +l+s++++f+Y
  KOO21657.1 483 ARLEPPGGPEQGGTLVRVRGTGF-DDVGGLFCKFGGESPVPASLVDREHVRCYSPQRTpnassyvddafggtYDERTVEVTINGqmHALTSSGVRFAY 579
                 56899******************.***********99888888***************9999999999999866777777777777999999999998 PP

  == domain 6  score: 13.0 bits;  conditional E-value: 9.1e-06
         TIG   3 issisPnsgsasgGttititGtnF..........gtnssdssvtiggtpctvta.....svssttlvcttPpgp..sgllnvsvlvdg 73 
                 +s i+P  g+ +gGt +t+ G +F            ++  + +++gg + +  +        ++ lvc +P+ p   ++ +++v v +
  KOO21657.1 587 VSRIYPRGGPRQGGTPVTVWGVGFrdlghgrhtdVPTAAGLHCRFGGLELVPATlategGGGPQRLVCASPGLPapVSSTSLVVRVTN 674
                 689***************************987766777899*****99999888999999999999999999975334444444444 PP

>> TIG_plexin  TIG domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.2   0.0   2.4e-08   0.00021      19      89 .]      40     110 ..      23     110 .. 0.75
   2 ?   -2.9   0.0      0.79   7.1e+03      26      37 ..     155     166 ..     150     194 .. 0.60
   3 ?   -4.0   0.0       1.7   1.5e+04      25      36 ..     272     283 ..     265     303 .. 0.64
   4 !    9.5   0.0   0.00011      0.96      25      55 ..     402     434 ..     380     460 .. 0.71
   5 !    7.3   0.0   0.00053       4.7      27      53 ..     511     538 ..     500     575 .. 0.86
   6 !    3.4   0.0    0.0082        74      24      53 ..     624     659 ..     618     678 .. 0.77

  Alignments for each domain:
  == domain 1  score: 21.2 bits;  conditional E-value: 2.4e-08
  TIG_plexin  19 nlpalseklkCvFgdleeseatvsdnkvtCdtPkpeelppipegk..dhvtvkLsirsketgkdlast..nFtFY 89 
                  + +l+ ++kC+Fg+ e+++   +++++ C++P     p+  +g+  +hvtv+L+++ +  g++++ +  +Ft+Y
  KOO21657.1  40 AFQDLG-DVKCRFGEDEVQALLANETTIECASPGC-TSPTCVRGQeeTHVTVPLEVSMN--GVTFTGSglQFTYY 110
                 555554.89*******77777788***********.66777777767899999999888..88887652267766 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 0.79
  TIG_plexin  26 klkCvFgdlees 37 
                 +lkC Fg+    
  KOO21657.1 155 GLKCKFGENDMV 166
                 689999876553 PP

  == domain 3  score: -4.0 bits;  conditional E-value: 1.7
  TIG_plexin  25 eklkCvFgdlee 36 
                 +++ C+F+++++
  KOO21657.1 272 HGVLCRFTHTRT 283
                 567799988765 PP

  == domain 4  score: 9.5 bits;  conditional E-value: 0.00011
  TIG_plexin  25 eklkCvFgdlee.seatvs.dnkvtCdtPkpee 55 
                 ++++C+Fg l+e  +at++ +++++C +P++ +
  KOO21657.1 402 GDVRCRFGPLNEeVNATIDeEQSIRCVSPAHWL 434
                 4799***9887735688888*********9754 PP

  == domain 5  score: 7.3 bits;  conditional E-value: 0.00053
  TIG_plexin  27 lkCvFgdleeseat.vsdnkvtCdtPkp 53 
                 l C Fg  ++ +a  v++++v+C++P+ 
  KOO21657.1 511 LFCKFGGESPVPASlVDREHVRCYSPQR 538
                 67***998898887477*********85 PP

  == domain 6  score: 3.4 bits;  conditional E-value: 0.0082
  TIG_plexin  24 seklkCvFgdleeseatvs......dnkvtCdtPkp 53 
                 +++l+C+Fg le  +at+        +++ C++P  
  KOO21657.1 624 AAGLHCRFGGLELVPATLAteggggPQRLVCASPGL 659
                 5689*****999988876666777799*******86 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (726 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       264  (0.0147247); expected 358.6 (0.02)
Passed bias filter:                      227  (0.0126611); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.56u 0.22s 00:00:00.78 Elapsed: 00:00:00.39
# Mc/sec: 5517.59
//
Query:       KOO21658.1  [L=311]
Description: hypothetical protein Ctob_000932 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (311 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       492  (0.0274416); expected 358.6 (0.02)
Passed bias filter:                      361  (0.020135); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.45u 0.23s 00:00:00.68 Elapsed: 00:00:00.40
# Mc/sec: 2338.29
//
Query:       KOO21659.1  [L=717]
Description: hypothetical protein Ctob_000933 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (717 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       321  (0.017904); expected 358.6 (0.02)
Passed bias filter:                      260  (0.0145016); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.56u 0.24s 00:00:00.80 Elapsed: 00:00:00.43
# Mc/sec: 5061.48
//
Query:       KOO21660.1  [L=192]
Description: hypothetical protein Ctob_000930 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.038   13.9   0.1      0.071   13.0   0.1    1.5  1  YrhK      YrhK-like protein


Domain annotation for each model (and alignments):
>> YrhK  YrhK-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.1     4e-06     0.071      12      54 ..     117     160 ..     101     166 .. 0.88

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 4e-06
        YrhK  12 iigsllFlvGSilflpnse.fwkwqiagvwlFliGSilflirpv 54 
                 ++gs + ++GSil   + + f+  +i g++l l GS  f++ p 
  KOO21660.1 117 LLGSYVLILGSILSVLSGSiFEYVVITGCVLVLQGSRPFGMEPQ 160
                 689***********999999********************9985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (192 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       650  (0.0362541); expected 358.6 (0.02)
Passed bias filter:                      479  (0.0267165); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.26s 00:00:00.68 Elapsed: 00:00:00.41
# Mc/sec: 1394.54
//
Query:       KOO21661.1  [L=535]
Description: hypothetical protein Ctob_000931 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (535 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       563  (0.0314016); expected 358.6 (0.02)
Passed bias filter:                      386  (0.0215294); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.53u 0.23s 00:00:00.76 Elapsed: 00:00:00.40
# Mc/sec: 3981.96
//
Query:       KOO21662.1  [L=1535]
Description: unconventional myosin-va [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
   1.1e-195  651.8   0.0   1.4e-195  651.5   0.0    1.1  1  Myosin_head  Myosin head (motor domain)
    9.4e-13   48.6   0.3    1.1e-08   35.5   0.2    2.7  2  PH           PH domain
    9.8e-05   22.7   0.3    0.00076   19.9   0.1    2.6  2  PH_11        Pleckstrin homology domain
    0.00042   20.7   0.0      0.035   14.5   0.0    3.0  2  AAA_16       AAA ATPase domain
  ------ inclusion threshold ------
      0.041   13.8   0.2       0.45   10.4   0.0    2.5  2  PH_15        PH domain
      0.042   13.8   0.0       0.15   12.1   0.0    1.9  1  FERM_N       FERM N-terminal domain
      0.056   13.7   0.3       0.61   10.4   0.1    2.7  3  PH_8         Pleckstrin homology domain
       0.14   11.2   0.0       0.28   10.2   0.0    1.4  1  T2SSE        Type II/IV secretion system protein
       0.56   10.2  13.4       0.45   10.5   1.3    4.0  3  IQ           IQ calmodulin-binding motif


Domain annotation for each model (and alignments):
>> Myosin_head  Myosin head (motor domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  651.5   0.0    7e-199  1.4e-195       4     676 ..       1     687 [.       1     688 [. 0.92

  Alignments for each domain:
  == domain 1  score: 651.5 bits;  conditional E-value: 7e-199
                  GCGSSS-SHHHHHHHHHHHHHTT--EEEETTEEEEE--SS--STSSHHHHHHHTTS-GGGSSSSHHHHHHHHHHHHHHHTSEEEEEEESSTTSSHHHH CS
  Myosin_head   4 lveLsllneasvlenlkkRykkdliYtysglvlvavnPykklkiysedvikaykgkkreelpPHifaiadeayrslledkenqsilisGEsGAGKtea 101
                  +++L +l+++s+l+nlk+R+k++l+Yty+g ++++vnP+k+     + + ++ykg  r+ lpPHi+a+ d+ y+++++d+++qsilisGEsGAGKtea
   KOO21662.1   1 MISLPTLTKDSILDNLKRRFKAELVYTYVGDIVISVNPFKNTGCVGKGIRAKYKGGARTHLPPHIYALVDQTYNTMVRDNRSQSILISGESGAGKTEA 98 
                  68899********************************************************************************************* PP

                  HHHHHHHHHHHSSSSSCTCTTHHHHHHHHHHHHHHHHHEEEESSETTEESSEEEEEEEEETTSSEEEEEEEEECE-GGGGT---TT--SBHHHHHHHH CS
  Myosin_head 102 tKkvlqylasvaeskekveeeeleekilqsnPilEafGnAktvrndnssRFGKfieiefdakgkiagakietYLLEksRvvkqakeERnyHiFYqlla 199
                   K  l+++a  ++ k +   +e+  +++ +nPi+E fGnAktvrn+nssRFGK+++i+f+++g i ga  + YLLEk R+++  ++ERnyHiFY+l +
   KOO21662.1  99 MKICLTFIAEASQIKGQRVADEVAPRLMMTNPIMEGFGNAKTVRNNNSSRFGKHFDIQFSSNGVILGAVTTVYLLEKPRICQHLEGERNYHIFYMLAK 196
                  ***************99999**************************************************************************9987 PP

                  CSTH.HHHHHTT--TCCGSTTTTTTSSS.SBTTS-HHHHHHHHHHHHHHHT--HHHHHHHHHHHHHHHHHCTSSEEEECTTSSEEESSHHHHHHHHHH CS
  Myosin_head 200 gase.eekkelkledvkdyaylsqsgel.tvdgiddseefketkkaldilglseeeqkeifrivaailhlGniefkkeakdeqavledeeklekaael 295
                    ++ +   ++ l++ ++y +l+q+g++ +v + +d+eef + +++l  lg+s+++++e++ ++aa l lGni+f   +++  ++++d++ l+ +ae 
   KOO21662.1 197 APKPiRDLPSVALTKWENYFILNQKGTVaEVTTWNDEEEFADCHESLFKLGFSNDQRTELYVMLAACLSLGNIKFDAGKEG--SEVKDTKLLSRCAEQ 292
                  655425678999************986428*********************************************998866..69999999******* PP

                  HTS-HHHHHHHHHSEEEEET.TEEEEEE-BHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSS-S-SEEEEEEEEE-B---S.SB-HHHHHHHHHH CS
  Myosin_head 296 lgvdaeelekalvkrriktg.kevvskalnveqaevardalakaiyerlFdwlverinkslekkkeekksfiGvLDiaGFEife.knsFEqlcinyvn 391
                  l+v+ + +  a++ +++  g  ++++++l+  +a++ar++l  +iy+  Fdw v+ in  +++ +   ++  GvLDi+GFE f   nsF qlcin++n
   KOO21662.1 293 LQVEPTMILDAITFKTMGGGkISTYKSPLDPLRANIARNSLVMHIYSLCFDWCVQVINDYISVFN--AAYCTGVLDIFGFENFAtCNSFPQLCINFTN 388
                  *****************988679***************************************999..999*************626************ PP

                  HHHHHHHHHHHCHHHHHHHHHTTSSGCGS-GGGCCHHHHHHHHSSSTSHHHHHHHHHTSTTS-HHHHHHHHHHHHTTST......TEEETTSTTTTTE CS
  Myosin_head 392 EkLqqlFnelvlklEqeeYvrEgiewkfidfgldnqaiidLiekkplGilslLdeecllpkatdetfleklvkafskha......kfeksrlkkgeak 483
                  E L +lF+e+v+klEqe YvrE++ew+f+ +  dnq++idLi k+pl il lLde c++ +++d++ le+ +++f ++a       ++k++ k ++++
   KOO21662.1 389 ESLHNLFIEHVFKLEQEVYVREEVEWSFVSY-EDNQHVIDLIAKRPLCILGLLDEGCTTGSGKDSSVLENCHSTFGSEAknakykAYMKPK-KASDKT 484
                  *******************************.7******************************************6555233232334444.7999** PP

                  EEEEETTCEEEEE-TTHHHHHH----HHHHHHHHTSSS.HHHHHHCCSHCH.....B--.........CSSSECCC..........CCSBHHHHHHHH CS
  Myosin_head 484 FiikHyAgkveYevegfleKnkDtlnedlvellksskk.kllaelfkeeek.....eakaeakksekkkkkkkkkk..........kfktvgskfkes 565
                  Fi++HyAg+v Y++egf+eKnkD l++d+++ll+  ++ + l++l ++++k     +     +++e+ k  +++            k+ktvg++f es
   KOO21662.1 485 FIVSHYAGEVIYTIEGFVEKNKDELSADIMALLEVHTRfDQLKQLAQNDSKkkeeaA-----AAKEAFKPGARRGGgggggggpglKKKTVGKTFSES 577
                  *********************************977766*******99887444431.....33333222222221112222222289********** PP

                  HHHHHHHHCTSEEEEEEEE-SSSS--TT---HHHHHHHHHHTTHHHHHHHHHHSSSEEEEHHHHHHHHGGGSTTSS-SS.SSSHHHHHHHHHHHTTS- CS
  Myosin_head 566 laeLmktlestnphfvRCikpnekkkakkldeslvleqlrclGvlegirirraGfpnRitfeefvqrYkllakkelkkllkedakkaveailkeleld 663
                  l++Lm++l+st+ h++RC+kpn++ ka+++d++ +l+ql ++G+le  +ir+aG   R   ++f+q Y+++a++ + +l +++  k +e +lk+l +d
   KOO21662.1 578 LSSLMEKLRSTEHHYIRCLKPNQTLKAGDWDNDFMLKQLAYSGTLEVTQIRKAGLNVRRPLKHFYQYYRICADDPA-SLRAGTVTKRCELLLKQLAVD 674
                  ***********************************************************************99997.555899*************** PP

                  GCGEEECSSEEEE CS
  Myosin_head 664 keeykiGktKiFf 676
                   ++y++Gkt +F+
   KOO21662.1 675 PNKYRVGKTLLFL 687
                  **********997 PP

>> PH  PH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.4   0.0   0.00036      0.72       2      56 ..     839     889 ..     838     905 .. 0.90
   2 !   35.5   0.2   5.8e-12   1.1e-08       2     103 ..    1014    1136 ..    1013    1138 .. 0.84

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00036
                 EEEEEEEEETSSSSCSEEEEEEEEETTEEEEESSTTCTTESSEEEEEESTTEEEE CS
          PH   2 vkeGwLlkkgsgkkkswkkrwfvLkdsellyykndksekdkepkgsislsncevv 56 
                  +eGwL+ + ++ + +  k+++ Lk++ l +++++   ++ +   s++l  ce +
  KOO21662.1 839 SHEGWLSVRIGKLS-KAVKYYVSLKQGTLTLFEDH---ESLDAVLSYNLAVCELQ 889
                 69********9999.9999****************...**********9999876 PP

  == domain 2  score: 35.5 bits;  conditional E-value: 5.8e-12
                  EEEEEEEEETSSSSC......SEEEEEEEEETTE.EEEESSTTCTTESSEEEEEESTTEEEEEEEC......TTSSSSTSEEEE...........EE CS
          PH    2 vkeGwLlkkgsgkkk......swkkrwfvLkdse.llyykndksekdkepkgsislsncevvevva......tedpkrkfcfel...........ri 74  
                  +keG++ k++ g+ k      sw++r++vL ++  l yy+++    + e kgs++l+     e+++      +e+++++ +++l             
  KOO21662.1 1014 IKEGYMRKRKTGNNKlqdlkrSWERRYCVLYNDGkLRYYESR---DKAEEKGSLDLRFFALHEEDEdleiddEEEGEERQSLKLanqffkiekgkQ- 1106
                  79*****999999999***************5555*******...99999*******999999999999996557777778888888885555541. PP

                  STSSS.....TEEEEEEESSHHHHHHHHHHHHHH CS
          PH   75 verng.....srtyllqasseeerkeWikaiqsa 103 
                            ++ ++l+ +    + eWi+++q +
  KOO21662.1 1107 ----FglhsgQKAFFLASPERAVADEWIATLQTT 1136
                  ....0344446********************976 PP

>> PH_11  Pleckstrin homology domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.0       1.1   2.1e+03       2      34 ..     841     874 ..     840     901 .. 0.76
   2 !   19.9   0.1   3.8e-07   0.00076       9     103 ..    1032    1134 ..    1015    1136 .. 0.61

  Alignments for each domain:
  == domain 1  score: -0.9 bits;  conditional E-value: 1.1
       PH_11   2 kGylkkkgsk.aWkrrwfavlkdgvLeyYksekk 34 
                 +G+l ++ +k +   ++ + lk+g L ++++ + 
  KOO21662.1 841 EGWLSVRIGKlSKAVKYYVSLKQGTLTLFEDHES 874
                 6888888888654567777**********98764 PP

  == domain 2  score: 19.9 bits;  conditional E-value: 3.8e-07
       PH_11    9 gskaWkrrwfavlkdgvLeyYksekkkv......vkhviklSngseaklkadlisaalf..kidsirssksddllleistetkifflkgdsneetee 97  
                   +++W rr++++ +dg+L+yY+s  k        +++       ++  +  +    +++  k++++  + ++ +++ +  ++k ffl+  ++    e
  KOO21662.1 1032 LKRSWERRYCVLYNDGKLRYYESRDKAEekgsldLRFFALHEEDEDLEIDDEEEGEERQslKLANQFFKIEKGKQFGLHSGQKAFFLASPERAVADE 1128
                  345*******999*********776666333334444443333333333333333333322333333366666666666666669999999999999 PP

       PH_11   98 Wvealk 103 
                  W+  l+
  KOO21662.1 1129 WIATLQ 1134
                  *99998 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.5   0.0   1.8e-05     0.035      14      58 ..      71     112 ..      64     137 .. 0.78
   2 ?    2.5   0.0     0.083   1.7e+02      38     135 ..     484     590 ..     477     597 .. 0.60

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 1.8e-05
      AAA_16  14 sale.rvrsgrpelvllsGesGvGKsslvrellralekdggiflrg 58 
                 ++++ +vr++r++++l+sGesG GK+  ++ +l+ + ++     + 
  KOO21662.1  71 QTYNtMVRDNRSQSILISGESGAGKTEAMKICLTFIAEA----SQI 112
                 556668999999**************9999888877776....444 PP

  == domain 2  score: 2.5 bits;  conditional E-value: 0.083
      AAA_16  38 sslvrellralekdggiflrgkcdqlesaipy..salaqalareellrqlldeaesaeleawrekleeala........avpelagaea.......... 116
                 + +v + +     + +++++g  ++++ +++    al+++ +r + l+ql++++++++ ea+++  +ea++                            
  KOO21662.1 484 TFIVSHYAG----EVIYTIEGFVEKNKDELSAdiMALLEVHTRFDQLKQLAQNDSKKKEEAAAA--KEAFKpgarrgggG--------Gggggpglkkk 568
                 555544443....334446666666655544442559999999999****99977766666555..55555223333330........24444555556 PP

      AAA_16 117 ...srllellkrllallsrder 135
                    + + e l++l+++l+++e+
  KOO21662.1 569 tvgKTFSESLSSLMEKLRSTEH 590
                 6677777777777755555555 PP

>> PH_15  PH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.0   0.00023      0.45      24      44 ..    1033    1053 ..    1024    1064 .. 0.85
   2 ?   -0.4   0.0      0.51     1e+03      32      89 ..    1436    1484 ..    1427    1500 .. 0.77

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00023
       PH_15   24 rskWekrlavltkdgkLiiYk 44  
                  +++We+r +vl +dgkL  Y+
  KOO21662.1 1033 KRSWERRYCVLYNDGKLRYYE 1053
                  459**************9998 PP

  == domain 2  score: -0.4 bits;  conditional E-value: 0.51
       PH_15   32 avltkdgkLiiYkyflldigagkpliGqtlslnklkklkvvkeekgviivkivtedek 89  
                   v+++ g L+iY      +ga  p++  t+  n l + +  +   +++i++i+ + + 
  KOO21662.1 1436 LVVINYGGLHIYR-----LGAS-PTLLSTFDFNTLVSWQSMN---DMLIINIIYAAKG 1484
                  57788899****9.....5777.8888999999887776554...7888887766555 PP

>> FERM_N  FERM N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   7.3e-05      0.15       1      42 [.    1154    1195 ..    1154    1202 .. 0.94

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 7.3e-05
                  EE-TTS-EEEEEEETTSSHHHHHHHHHHHHT-S-GGGEEEEE CS
      FERM_N    1 VrlLDgtvkeitvddsktvtdlLdtVcarigltehdyFgLvf 42  
                  V l+Dgt+ ++  d+ ++ +d+  + c++  l++  + gL +
  KOO21662.1 1154 VSLMDGTFTTMVMDEATRTRDVVRYMCKKHCLNNESEWGLIE 1195
                  78*************************************987 PP

>> PH_8  Pleckstrin homology domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.0         2     4e+03      11      36 ..     852     874 ..     842     888 .. 0.68
   2 ?   10.4   0.1   0.00031      0.61      11      61 ..    1033    1080 ..    1019    1098 .. 0.76
   3 ?    2.0   0.0      0.13   2.6e+02      17      86 ..    1067    1134 ..    1061    1136 .. 0.86

  Alignments for each domain:
  == domain 1  score: -1.8 bits;  conditional E-value: 2
        PH_8  11 lqgyakRfFvLdlksstlsYyrddns 36 
                  +  +k + +L  k++tl+ ++d++s
  KOO21662.1 852 SKA-VKYYVSL--KQGTLTLFEDHES 874
                 444.6666666..9999999998765 PP

  == domain 2  score: 10.4 bits;  conditional E-value: 0.00031
        PH_8   11 lqgyakRfFvLdlksstlsYyrddnssalrgkiplslaiisaneekreiii 61  
                  ++ + +R+ vL ++ ++l Yy+++++++ +g++ l+  ++  ++e+ e  i
  KOO21662.1 1033 KRSWERRYCVL-YNDGKLRYYESRDKAEEKGSLDLRFFALHEEDEDLE--I 1080
                  56799******.**********99998887777766655555444444..4 PP

  == domain 3  score: 2.0 bits;  conditional E-value: 0.13
        PH_8   17 RfFvLdlksstlsYyrddnssalrgkiplslaiisaneekreiiidsGaevWeLkasnekdfqeWveale 86  
                  RfF L  +  +l+   d+++++ r ++ l  +  +++ + +++ + sG + + L + +++ ++eW+ +l+
  KOO21662.1 1067 RFFALHEEDEDLEI-DDEEEGEERQSLKLANQFFKIE-KGKQFGLHSGQKAFFLASPERAVADEWIATLQ 1134
                  89999999999986.5566778899999999999996.6789************************9997 PP

>> T2SSE  Type II/IV secretion system protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.0   0.00014      0.28     115     156 ..      70     109 ..      43     118 .. 0.87

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.00014
       T2SSE 115 kekiaevlrkavrerglilvsGgTgsGKttllyallkeinks 156
                 +++++ ++r    + ++il+sG  g GKt  + ++l++i++ 
  KOO21662.1  70 DQTYNTMVRDN--RSQSILISGESGAGKTEAMKICLTFIAEA 109
                 56677777777..7899**********************987 PP

>> IQ  IQ calmodulin-binding motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.6   0.1     0.017        33       4      16 ..     708     720 ..     707     725 .. 0.81
   2 ?    0.6   1.7      0.34   6.7e+02       1      20 [.     728     747 ..     728     748 .. 0.91
   3 ?   10.5   1.3   0.00022      0.45       3      21 .]     753     771 ..     751     771 .. 0.89

  Alignments for each domain:
  == domain 1  score: 4.6 bits;  conditional E-value: 0.017
                 HHHHHHHHHHHHH CS
          IQ   4 aikIQaawRGyla 16 
                 +i++Q+++R+ + 
  KOO21662.1 708 VITLQSFFRMLKY 720
                 79*******9775 PP

  == domain 2  score: 0.6 bits;  conditional E-value: 0.34
                 HHHHHHHHHHHHHHHHHHHH CS
          IQ   1 rkaaikIQaawRGylaRkry 20 
                 r+a++++Q +++ +  R++y
  KOO21662.1 728 RRAILRLQGFCKSWEIRRAY 747
                 79************888887 PP

  == domain 3  score: 10.5 bits;  conditional E-value: 0.00022
                 HHHHHHHHHHHHHHHHHHH CS
          IQ   3 aaikIQaawRGylaRkryk 21 
                 +a ++Q++ R yla k+++
  KOO21662.1 753 SARLLQRHARTYLAHKKFQ 771
                 6789*************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1535 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       727  (0.0405488); expected 358.6 (0.02)
Passed bias filter:                      567  (0.0316247); expected 358.6 (0.02)
Passed Vit filter:                        68  (0.00379274); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.98u 0.29s 00:00:01.27 Elapsed: 00:00:00.45
# Mc/sec: 10144.99
//
Query:       KOO21663.1  [L=212]
Description: protein af-9-like protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.4e-27   95.4   0.0    2.1e-27   94.9   0.0    1.2  1  YEATS         YEATS family
  ------ inclusion threshold ------
       0.13   12.0   1.5       0.25   11.1   0.2    2.2  2  SCNM1_acidic  Acidic C-terminal region of sodium channel modi


Domain annotation for each model (and alignments):
>> YEATS  YEATS family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   94.9   0.0   2.3e-31   2.1e-27       2      79 ..      33     111 ..      32     113 .. 0.97

  Alignments for each domain:
  == domain 1  score: 94.9 bits;  conditional E-value: 2.3e-31
       YEATS   2 hkWtvavrsa.asddlsefikkVqFkLhetyanptrvvekpPFevtetGwGeFeiqikiffkpeaekpltlehdLklhp 79 
                 h+Wt+++r a  ++dls +++kV+F Lh+t ++ptr++e +PFevt +GwGeFe++++++f+++ +kp++l h+Lkl p
  KOO21663.1  33 HEWTIYLRAAnPEEDLSLIVRKVVFVLHPTLQPPTRTIETAPFEVTDQGWGEFEVTLQVYFHDSRDKPIELSHMLKLYP 111
                 9*********9899*************************************************99************87 PP

>> SCNM1_acidic  Acidic C-terminal region of sodium channel modifier 1 SCNM1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.2   2.8e-05      0.25      17      30 ..     153     166 ..     151     171 .. 0.89
   2 ?   -2.4   0.1      0.46   4.1e+03       2      13 ..     193     204 ..     192     206 .. 0.82

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 2.8e-05
  SCNM1_acidic  17 sGWlqdsdGkWvKD 30 
                   +GW+  ++GkW+ D
    KOO21663.1 153 KGWKHSANGKWFTD 166
                   6***********99 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 0.46
  SCNM1_acidic   2 ptrrrelehylk 13 
                   ++rrr le++lk
    KOO21663.1 193 SKRRRLLEDELK 204
                   578999999987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (212 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       756  (0.0421663); expected 358.6 (0.02)
Passed bias filter:                      654  (0.0364772); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.40u 0.22s 00:00:00.62 Elapsed: 00:00:00.36
# Mc/sec: 1750.03
//
Query:       KOO21664.1  [L=478]
Description: hypothetical protein Ctob_000934, partial [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.7e-11   44.0   4.8    3.8e-11   42.9   4.8    1.6  1  RINGv          RING-variant domain
    1.6e-05   24.9   0.2    0.00011   22.3   0.2    2.1  1  DUF179         Uncharacterized ACR, COG1678
  ------ inclusion threshold ------
        2.5    8.6   9.5        5.7    7.5   9.5    1.5  1  K_channel_TID  Potassium channel Kv1.4 tandem inactivation do


Domain annotation for each model (and alignments):
>> RINGv  RING-variant domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.9   4.8   6.4e-15   3.8e-11       1      39 [.       4      43 ..       4      64 .. 0.73

  Alignments for each domain:
  == domain 1  score: 42.9 bits;  conditional E-value: 6.4e-15
                ETTTTEE-SSSS--B-SS--STCCCSB-HHHHHHHHHH..T CS
       RINGv  1 CriCleeeeeseplispCkCrGslklvHesClekWlde..k 39
                Cr C+++e+e  plispC+CrG+ k+vH +Cl +W +    
  KOO21664.1  4 CRYCFDGEDE-GPLISPCNCRGDQKWVHLQCLRRWQRMvlV 43
                *******655.67**********************988652 PP

>> DUF179  Uncharacterized ACR, COG1678
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.3   0.2   1.8e-08   0.00011      94     154 ..     361     417 ..     219     422 .. 0.56

  Alignments for each domain:
  == domain 1  score: 22.3 bits;  conditional E-value: 1.8e-08
                 SHHHHHHCSTTSCSS..........EEEEEEEEEECTTHHHHHHHTTSEEEEE-.HHHHHCTSTSSHHHHH CS
      DUF179  94 ldilealagkagpek..........lrvflGyagWeagQLeeEieegaWlvvpassedllfetppeelWee 154
                  +            +          +  + G a W++ QL  Ei++g W  ++as  ++l    p e+W++
  KOO21664.1 361 PS------------NlevlgdgapvVHCVWGDAQWSRTQLLGEIARGHWGLCHASVAEMLAP--PTERWAA 417
                 22............1444444444499999************************99966655..9999987 PP

>> K_channel_TID  Potassium channel Kv1.4 tandem inactivation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.5   9.5   0.00095       5.7      29      57 ..     443     475 ..     438     477 .. 0.65

  Alignments for each domain:
  == domain 1  score: 7.5 bits;  conditional E-value: 0.00095
  K_channel_TID  29 ererlahsraaaaaava.aaa...aaaeGeGGg 57 
                    erer  +sraa a+a a +aa    aa G GG+
     KOO21664.1 443 ERERALQSRAADASASAvEAAedaEAARGRGGS 475
                    9***99****98766541333122455577765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (478 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       404  (0.0225333); expected 358.6 (0.02)
Passed bias filter:                      294  (0.016398); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.45u 0.23s 00:00:00.68 Elapsed: 00:00:00.37
# Mc/sec: 3840.64
//
Query:       KOO21665.1  [L=168]
Description: family transcription regulator [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.7e-11   43.7   0.0    2.9e-11   43.6   0.0    1.1  1  TENA_THI-4       TENA/THI-4/PQQC family
     0.0086   15.9   0.0      0.012   15.4   0.0    1.3  1  Haem_oxygenas_2  Iron-containing redox enzyme


Domain annotation for each model (and alignments):
>> TENA_THI-4  TENA/THI-4/PQQC family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.6   0.0   3.3e-15   2.9e-11      72     204 ..      22     158 ..       1     163 [. 0.87

  Alignments for each domain:
  == domain 1  score: 43.6 bits;  conditional E-value: 3.3e-15
                 HHCHHHHHHHHHHHTT-HHHHHCTTT--HHHHHHHHHHHHHHCHS-HHHHHHHHHHHHHHHHHHHHHHCCHHHS-TSCHH.HHHHHHHCSHHHHHHHHH CS
  TENA_THI-4  72 dgeeielhlrlaealGlsreelsktkpspatkayvrylldlarrgslaeavaallpclfvyqeiaerlkeklralegpey.yewvkeyaseefraavee 169
                  g+e++ ++r  ealG+s+   ++t   p t + ++++ ++a +g+lae++a l + +++yq+  er+   ++a eg++y +ewv+ ++  +f++ v+ 
  KOO21665.1  22 TGKENAYFERSFEALGVSDAVRESTPSAPVTGSFIDLMRNVAATGNLAEMLAVLVAAEWSYQSWGERVL--PKAVEGSFYfREWVDLHSGPYFGSVVAY 118
                 56789999************************************************************9..55889999868***************99 PP

                 HHHHHHHHHHTSH.....HHHHHHHHHHHHHHHHHHHHHH CS
  TENA_THI-4 170 akrllerllakvs.....deqleelqeiflkalefetsfl 204
                  ++ll+   + ++     +++l++++e+f++a  +e+ f 
  KOO21665.1 119 FRELLDAEARRLNtllggGKVLAAARERFEEAVNLEYHFF 158
                 999999766665533333577***************9997 PP

>> Haem_oxygenas_2  Iron-containing redox enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.0   1.3e-06     0.012      55     119 ..      29      92 ..      26     127 .. 0.82

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 1.3e-06
  Haem_oxygenas_2  55 yrrllkalGldeeplealpelpetlalinlfeavalsrrllgallGallalEllvsletlklaee 119
                      ++r  +alG++++  e +p +p t   i+l+++va++ +l  ++l++l+a E+++++  ++++ +
       KOO21665.1  29 FERSFEALGVSDAVRESTPSAPVTGSFIDLMRNVAATGNLA-EMLAVLVAAEWSYQSWGERVLPK 92 
                      788999**************************999998777.68*********997666666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (168 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       367  (0.0204696); expected 358.6 (0.02)
Passed bias filter:                      337  (0.0187964); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.39u 0.25s 00:00:00.64 Elapsed: 00:00:00.40
# Mc/sec: 1248.87
//
Query:       KOO21666.1  [L=1846]
Description: tir-containing protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.2e-18   67.0   0.0    1.5e-08   35.2   0.0    3.5  3  TIR_2           TIR domain
     0.0031   15.9   3.1        5.6    5.2   0.1    3.7  4  Neurochondrin   Neurochondrin
  ------ inclusion threshold ------
      0.027   14.3   0.1        7.6    6.3   0.1    3.1  3  TIR             TIR domain
      0.076   11.5   0.0      0.076   11.5   0.0    2.9  5  Proteasom_PSMB  Proteasome non-ATPase 26S subunit
      0.078   12.8   0.0       0.28   11.0   0.0    2.0  1  DUF3636         Protein of unknown function (DUF3636)
       0.11   12.5   1.4       0.28   11.2   1.4    1.7  1  TMF_DNA_bd      TATA element modulatory factor 1 DNA binding
       0.35   11.0  16.5        3.6    7.8   0.0    7.6  9  Arm             Armadillo/beta-catenin-like repeat
        2.1    8.6  10.6       0.33   11.2   5.6    2.4  2  FliJ            Flagellar FliJ protein


Domain annotation for each model (and alignments):
>> TIR_2  TIR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.2   0.0   6.9e-12   1.5e-08       8     112 ..     745     869 ..     732     876 .. 0.79
   2 !   27.4   0.0   1.8e-09   3.9e-06       2      77 ..    1201    1273 ..    1200    1298 .. 0.84
   3 ?   -2.6   0.0       3.6   8.1e+03      54      80 ..    1582    1609 ..    1579    1650 .. 0.75

  Alignments for each domain:
  == domain 1  score: 35.2 bits;  conditional E-value: 6.9e-12
       TIR_2   8 edkewaeklaeaLeaagir.vwldrwdlkpgedweeeieeaiessdvvlvvlspayles..........ewcreeleaale.aaeegkkrlipvlle.. 92 
                 ++ e ++ + +aL +ag+  +++d++  ++ +d+ + ++++i +s++v+v+l+++y+++          +++r e+++a + +  +g  ++ipv++e  
  KOO21666.1 745 NHVERVRAVQAALAKAGLApCLVDAE--QSADDVSRPVADGIAQSACVVVFLTESYMKKaaglgskgddDNARFEFNLACSpL--KGVAKIIPVVMEpq 839
                 4568999**********996789996..789**************************99999999988777999999999632..34566*******76 PP

       TIR_2  93 ....pekppl.....aslqyidlskk.dee 112
                     +  +pl     +++ yidl ++ de+
  KOO21666.1 840 claqTAWQPLflgklGGKEYIDLARDnDEA 869
                 554312223234566********9765443 PP

  == domain 2  score: 27.4 bits;  conditional E-value: 1.8e-09
       TIR_2    2 FiSyssed.kewaeklaeaLeaagirvwldrwdlkpgedweeeieeaiessdvvlvvlspaylesewcreeleaale 77  
                  FiS+ ++  +++a+ l++    +g+++++d ++l++ +d++      +  +dv+++vls+  +es+ c++el +a++
  KOO21666.1 1201 FISHKRSSaQDFARGLHSLIVHHGHSCFIDVENLESLSDLP----MVVAGCDVFIMVLSDGVFESKFCMQELASAVN 1273
                  9*****8758*********************9986666555....4569**************************96 PP

  == domain 3  score: -2.6 bits;  conditional E-value: 3.6
       TIR_2   54 vlvvlspaylesewcreeleaale.aae 80  
                  vl++l  +y++  w++ e+ +a++ +++
  KOO21666.1 1582 VLILLDMSYMSRFWTQFEAWMAFQeIDS 1609
                  8999999999999999986665542443 PP

>> Neurochondrin  Neurochondrin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.5   0.1     0.004         9     100     152 ..      38      89 ..      28     116 .. 0.79
   2 !    4.0   0.0    0.0058        13      81     161 ..     134     217 ..     121     233 .. 0.87
   3 !    5.2   0.1    0.0025       5.6     160     229 ..     491     560 ..     475     596 .. 0.86
   4 ?   -3.3   0.0      0.91     2e+03     525     564 ..    1355    1391 ..    1353    1414 .. 0.72

  Alignments for each domain:
  == domain 1  score: 4.5 bits;  conditional E-value: 0.004
  Neurochondrin 100 rIPtlle.vllkasdedntemvddayecLkavaatprGakaliasgavsaliqi 152
                    ++P+l + v++++    +++++ d+  +L+ +a t++Ga+al a+ +++a++ +
     KOO21666.1  38 AVPMLQAqVMNDPL--LRRSTTADCCTLLTHLARTDAGAQALKALIDARAVCAV 89 
                    56777541444444..499*********************99999888888864 PP

  == domain 2  score: 4.0 bits;  conditional E-value: 0.0058
  Neurochondrin  81 ilacFcaeeelashsevverIPtllevllkasde...dntemvddayecLkavaatprGakaliasgavsaliqiyseqsyald 161
                    ++   +a  ++ ++ +v+  +P+++ v+++ +d    ++      + ++L++++a ++G++a+   g ++ l + + ++s a +
     KOO21666.1 134 LVSDLAAARDVSTEMHVLPLVPLIVPVVQSMIDGgvsARDVFAVAVVKLLASLSAEQAGLRAVHGAGVLPLLLPLMRAGSAAGE 217
                    556667888999999******************99966666667899**************************99999887655 PP

  == domain 3  score: 5.2 bits;  conditional E-value: 0.0025
  Neurochondrin 160 ldealalllllvsksesssweekelellaviakiaedfesaedaskfellelLaallpslrsellleslq 229
                     + al+ll  + +  e  ++  +e  + a+i+ +  d  sa  a++ e le+La++lp+ + +  ++ +q
     KOO21666.1 491 DEAALKLLTSASALPEGAAVAVDEGVVPAIIKLLESDARSARHAEAAECLEVLARMLPKRTAPAAAVCVQ 560
                    578999999999999999999999999********************************99888655554 PP

  == domain 4  score: -3.3 bits;  conditional E-value: 0.91
  Neurochondrin  525 PeLkdqkdrLvlaanlavLGLllarqssklqktndakeff 564 
                     Pe +d++drLvl        Lllar++s+   ++++ +  
     KOO21666.1 1355 PEGQDTPDRLVLTQR---RQLLLARSQSANRSKGSSATAA 1391
                     777899999999875...5699999888777766655443 PP

>> TIR  TIR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.1   0.0     0.016        35       8      72 ..     738     801 ..     728     838 .. 0.79
   2 ?   -2.1   0.0       1.2   2.8e+03      74     121 ..     956    1006 ..     951    1014 .. 0.64
   3 ?    6.3   0.1    0.0034       7.6       2      84 ..    1198    1273 ..    1197    1282 .. 0.78

  Alignments for each domain:
  == domain 1  score: 4.1 bits;  conditional E-value: 0.016
                 ...CCCHHCH..HHCHHHHHTTCCTTSEEEESSTT--SSS-HHHHHHHHHHCSSEEEEEE-TTHHHH CS
         TIR   8 frgsdtrenf..vshllkellekqkgiklfiddrdlepGeaiadelksaIkkSrrlivvlSknyass 72 
                 +r + +r+++  v ++  +l   + g   ++ d   +  ++++  + + I +S  ++v l ++y+++
  KOO21666.1 738 ARDELKRNHVerVRAVQAAL--AKAGLAPCLVD-AEQSADDVSRPVADGIAQSACVVVFLTESYMKK 801
                 45555555553345666777..89999999994.5589999************************87 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 1.2
                  CCCHHHHHHHCHHH-CTSTCEEEEEC....SS-HCCCHTT.HHHHHCHCCCC CS
         TIR   74 wcleElekilecalvekgqkvilify....evdpedvrkqtGslgeafkklk 121 
                  + l++l++i+e     +++  +li+     ev++++v k  G    ++++++
  KOO21666.1  956 KPLDALQYIIEHDA-AQRADALLIVSnvysEVLSQTVDKRHGAAMAQHEYVR 1006
                  56899999999999.6676666666511114555666666666666666555 PP

  == domain 3  score: 6.3 bits;  conditional E-value: 0.0034
                  CCEEEE...CCCHHCHHHCHHHHHTTCCTTSEEEESSTT--SSS-HHHHHHHHHHCSSEEEEEE-TTHHHHCCCCHHHHHHHC CS
         TIR    2 YvvflsfrgsdtrenfvshllkellekqkgiklfiddrdlepGeaiadelksaIkkSrrlivvlSknyasskwcleElekile 84  
                  Y  f+  +++ + + f+  l   +   + g + fid   +e+ e++ ++l   + ++ + i+vlS    +sk c++El ++++
  KOO21666.1 1198 YNTFI-SHKRSSAQDFARGLHSLI--VHHGHSCFID---VENLESL-SDLPMVVAGCDVFIMVLSDGVFESKFCMQELASAVN 1273
                  55666.455556666777777767..7778888888...5555555.6799999**************************997 PP

>> Proteasom_PSMB  Proteasome non-ATPase 26S subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.8   0.0       1.4   3.2e+03     217     237 ..      58      78 ..      55      79 .. 0.88
   2 ?   -0.8   0.0      0.19   4.2e+02     178     322 ..     577     634 ..     509     642 .. 0.52
   3 ?   11.5   0.0   3.4e-05     0.076     199     256 ..     637     698 ..     619     704 .. 0.85
   4 ?   -3.7   0.1       1.4   3.1e+03     210     262 ..     926     978 ..     925     982 .. 0.80
   5 ?   -4.2   2.3         2   4.4e+03       9      67 ..    1769    1830 ..    1763    1832 .. 0.80

  Alignments for each domain:
  == domain 1  score: -3.8 bits;  conditional E-value: 1.4
  Proteasom_PSMB 217 ldalelltelAegkhgleyle 237
                     +d+  llt+lA++  g+++l+
      KOO21666.1  58 ADCCTLLTHLARTDAGAQALK 78 
                     789999*******99999986 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 0.19
  Proteasom_PSMB 178 riYelavelakkSaealsivtellekllkeldgeDvLvqldalelltelAegkhgleyleqkgvvdkiselierveedPlgelllpglvkFfgkl 272
                     r       la++S++a +++ +l+ ++                                                                    
      KOO21666.1 577 RCARALGYLAEASSKARAVIRTLVARI-------------------------------------------------------------------- 603
                     444444444555555555555555555.................................................................... PP

  Proteasom_PSMB 273 avisplqvlegyPklleklfemlesedptilpvAldtlgvlassvegkev 322
                                        fe ++   +t   + l  lgv + s++g +v
      KOO21666.1 604 -------------------FEEADGGRETHAIATLQLLGVTCESPDGARV 634
                     ...................5555555555555555555555555555544 PP

  == domain 3  score: 11.5 bits;  conditional E-value: 3.4e-05
  Proteasom_PSMB 199 e..llekllkeldg.eDvLvqldalelltelAe.gkhgleyleqkgvvdkiselierveedP 256
                     +  ++ ++++ l g +D  ++++ale+lt++A+ ++  ++ + + + +d +  l++r+   P
      KOO21666.1 637 KagVVAEAVQALSGaRDTQLRAKALEVLTSVANnNEAARASMRDGNLIDTLVRLLHRSWAVP 698
                     3458999**************************77788899************999986665 PP

  == domain 4  score: -3.7 bits;  conditional E-value: 1.4
  Proteasom_PSMB 210 geDvLvqldalelltelAegkhgleyleqkgvvdkiselierveedPlgelll 262
                     ++Dv v   al ll +l++g   +++++  + +d ++++ie+   +  ++ll+
      KOO21666.1 926 DRDVSVGKLALALLHTLSRGDALRQAIQAAKPLDALQYIIEHDAAQRADALLI 978
                     67888888899999999999999999999999999999998877666666666 PP

  == domain 5  score: -4.2 bits;  conditional E-value: 2
  Proteasom_PSMB    9 leelssk..eeileeLtklksalasspevsalsesile.leelfdclntdkreqvtlcvell 67  
                      +e+ls++  ++  e L++ k +l+++ ev  ls++ ++ + ++   + ++ ++q +l v+ll
      KOO21666.1 1769 IEQLSQQlaQANAEVLQANKEVLQANKEVMRLSQAHTDaTSRAHTEFANAVSKQAELHVQLL 1830
                      66666666688889999999999999999999999888888888888888888999999888 PP

>> DUF3636  Protein of unknown function (DUF3636)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   0.00013      0.28      97     147 ..     643     693 ..     626     694 .. 0.90

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00013
                 ..TS-TTSHHHHHHHHHHHHHHHHHHHSHHHHHHHHH-SSHHHHHHHHHHH CS
     DUF3636  97 egeakvteaeilelrleaLrvLtafarspfgslalashdsaigRlvrvLsd 147
                 e+ ++ + a+ ++lr +aL+vLt++a+++ +++a ++  ++i  lvr+L++
  KOO21666.1 643 EAVQALSGARDTQLRAKALEVLTSVANNNEAARASMRDGNLIDTLVRLLHR 693
                 556677888999*************************************95 PP

>> TMF_DNA_bd  TATA element modulatory factor 1 DNA binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   1.4   0.00012      0.28      26      71 ..    1760    1805 ..    1755    1808 .. 0.91

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00012
  TMF_DNA_bd   26 kkelklnntikkLrkknkelekeikelkkkleklekeleeleerlk 71  
                  ++ +++ nti +L +++++++ e+ + +k++ + +ke+ +l++ ++
  KOO21666.1 1760 DTIHQQGNTIEQLSQQLAQANAEVLQANKEVLQANKEVMRLSQAHT 1805
                  6889**********************************99998766 PP

>> Arm  Armadillo/beta-catenin-like repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   0.0      0.69   1.5e+03       5      17 ..      30      42 ..      27      42 .. 0.88
   2 ?   -0.2   0.1      0.53   1.2e+03      11      24 ..     199     212 ..     195     215 .. 0.84
   3 ?    0.9   0.0      0.24   5.3e+02      11      28 ..     344     362 ..     339     363 .. 0.91
   4 ?    4.7   0.0     0.015        33       4      22 ..     380     398 ..     378     404 .. 0.86
   5 ?    7.8   0.0    0.0016       3.6       5      25 ..     508     528 ..     505     543 .. 0.84
   6 ?   -3.6   0.1       6.2   1.4e+04      32      40 ..     578     586 ..     577     586 .. 0.90
   7 ?   -3.4   0.0       5.4   1.2e+04      10      30 ..     637     658 ..     629     665 .. 0.63
   8 ?   -1.6   0.0       1.4   3.1e+03      12      23 ..     682     694 ..     675     704 .. 0.84
   9 ?   -0.1   0.3      0.48   1.1e+03      31      41 .]    1040    1050 ..    1035    1050 .. 0.86

  Alignments for each domain:
  == domain 1  score: -0.6 bits;  conditional E-value: 0.69
                HHHHHHTTHHHHH CS
         Arm  5 kdavieaGavppL 17
                 dav+ +Gavp L
  KOO21666.1 30 ADAVVALGAVPML 42
                589********98 PP

  == domain 2  score: -0.2 bits;  conditional E-value: 0.53
                 TTHHHHHHHHTTTS CS
         Arm  11 aGavppLvrLLsse 24 
                 aG++p L+ L++ +
  KOO21666.1 199 AGVLPLLLPLMRAG 212
                 8*********9844 PP

  == domain 3  score: 0.9 bits;  conditional E-value: 0.24
                 TTHHHHHHHHTT.TSSHHH CS
         Arm  11 aGavppLvrLLs.sedeev 28 
                 +Ga++ Lv+ L+ ++d+++
  KOO21666.1 344 LGALRTLVDALErCPDVRI 362
                 69*************9987 PP

  == domain 4  score: 4.7 bits;  conditional E-value: 0.015
                 HHHHHHHTTHHHHHHHHTT CS
         Arm   4 nkdavieaGavppLvrLLs 22 
                  +da+ +aG +p+L ++L+
  KOO21666.1 380 YRDAILDAGLLPRLAAFLE 398
                 599************9997 PP

  == domain 5  score: 7.8 bits;  conditional E-value: 0.0016
                 HHHHHHTTHHHHHHHHTTTSS CS
         Arm   5 kdavieaGavppLvrLLssed 25 
                   + ++ G+vp+ ++LL+s+ 
  KOO21666.1 508 AAVAVDEGVVPAIIKLLESDA 528
                 56779*************764 PP

  == domain 6  score: -3.6 bits;  conditional E-value: 6.2
                 HHHHHHHHT CS
         Arm  32 AawALsNLa 40 
                 +a+AL++La
  KOO21666.1 578 CARALGYLA 586
                 89*****97 PP

  == domain 7  score: -3.4 bits;  conditional E-value: 5.4
                 HTTHHHHHHHHTT.TSSHHHHH CS
         Arm  10 eaGavppLvrLLs.sedeevqe 30 
                 +aG+v   v+ Ls   d++++ 
  KOO21666.1 637 KAGVVAEAVQALSgARDTQLRA 658
                 6777777777777666655555 PP

  == domain 8  score: -1.6 bits;  conditional E-value: 1.4
                 THHHHHHHHTT.T CS
         Arm  12 GavppLvrLLs.s 23 
                 + ++ LvrLL+ s
  KOO21666.1 682 NLIDTLVRLLHrS 694
                 5799******876 PP

  == domain 9  score: -0.1 bits;  conditional E-value: 0.48
                  HHHHHHHHHTT CS
         Arm   31 eAawALsNLaa 41  
                   Aa+A++NLaa
  KOO21666.1 1040 IAATAVRNLAA 1050
                  69*******96 PP

>> FliJ  Flagellar FliJ protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.7   0.2         6   1.3e+04      51      66 ..    1334    1349 ..    1319    1351 .. 0.52
   2 ?   11.2   5.6   0.00015      0.33      47      97 ..    1755    1805 ..    1742    1838 .. 0.84

  Alignments for each domain:
  == domain 1  score: -3.7 bits;  conditional E-value: 6
        FliJ   51 qafisaldeaiaqqkq 66  
                  ++ ++++d+ i++++q
  KOO21666.1 1334 HNLMQTVDKLIKEHRQ 1349
                  4445555555555554 PP

  == domain 2  score: 11.2 bits;  conditional E-value: 0.00015
        FliJ   47 lrnyqafisaldeaiaqqkqelaqaekqvekareewqearqerkklekLke 97  
                  l++    i++  ++i+q+ q+laqa+++v +a +e ++a++e+  l   + 
  KOO21666.1 1755 LMKAFDTIHQQGNTIEQLSQQLAQANAEVLQANKEVLQANKEVMRLSQAHT 1805
                  5555567899999*****************************998876655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1846 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1019  (0.0568353); expected 358.6 (0.02)
Passed bias filter:                      554  (0.0308997); expected 358.6 (0.02)
Passed Vit filter:                        61  (0.00340231); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 1.08u 0.31s 00:00:01.39 Elapsed: 00:00:00.48
# Mc/sec: 11612.95
//
Query:       KOO21667.1  [L=584]
Description: serine threonine-protein kinase ctr1 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
      1e-47  162.8   0.0    1.4e-47  162.3   0.0    1.1  1  Pkinase         Protein kinase domain
    2.7e-42  144.8   0.0    4.8e-42  144.0   0.0    1.4  1  Pkinase_Tyr     Protein tyrosine kinase
    3.1e-06   26.2   0.0    4.7e-06   25.6   0.0    1.2  1  Pkinase_fungal  Fungal protein kinase
     0.0066   15.8   0.0      0.011   15.1   0.0    1.2  1  Kinase-like     Kinase-like
  ------ inclusion threshold ------
      0.031   14.2   0.1      0.098   12.6   0.0    1.9  2  APH             Phosphotransferase enzyme family


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  162.3   0.0   3.9e-51   1.4e-47       3     258 ..     101     363 ..      99     368 .. 0.84

  Alignments for each domain:
  == domain 1  score: 162.3 bits;  conditional E-value: 3.9e-51
                 EEEEEEEESSEEEEEEEETTTTEEEEEEEEECHCHCHHHH.HHHHHHHHHHHHHSCTTB--EEEEEEESSEEE.EEEE--TTEBHHHHHH.....HHSS CS
     Pkinase   3 kleklGeGsfGkVykaveketgkivAvKkikkekakkkke.kkvlrEikilkklkhpnivrlyevfeekdely.lvleyveggeladlle.....rkgs 94 
                  leklGeG+fG+V  +    +    AvK+++++++++     ++l+E   + +l+hpn+v ++++ +++ +++ +vle++e   l +ll+     r+  
  KOO21667.1 101 ILEKLGEGTFGTVHACS--FKATPCAVKQLREDRESSAALlADMLQEHDTMMTLRHPNVVLMLGITTDNVQRVgIVLELLEIS-LLELLHstaeyREYR 196
                 689*************9..577889***********99989**************************9866666*******87.566666355443344 PP

                 --HHHHHHHHHHHHHHHHHHHHTTEE-SS-SGGGEEEETTTEEEE-SGTTSEESSSSCS..BCTTTSCGGGS-HHHHTTSCBSHHHHHHHHHHHHHHHH CS
     Pkinase  95 lseeeakkiakqilegleylHskgiiHrDlKpeNiLidekgelKitDFGlakelesssk..ltsfvgtseYlAPEvlkeneyskkvDvWslGvilyell 191
                    + + +ia+ +++g++ylH ++++HrDlKp N+L++++ + K++DFG +++ + +s    + + gt+ Y+APEv +++ +s++ DvWs G++l+ + 
  KOO21667.1 197 TWRASLLSIASDVAKGVAYLHFNNLLHRDLKPGNVLLSDSWVAKVADFGSSAKGKPGSAaeGEGIHGTPPYMAPEVARGEAHSAALDVWSFGCLLVHMA 295
                 44457779******************************9999**************9987778899********************************* PP

                 HSS-STTTSSHHHHHHHHHHTHHHHHHHCT......SHH...HHHTTS-HHHHHHHHHHT-SSGCCSTTHHHH CS
     Pkinase 192 tgkppfsgekgkekvekeldqlekilkilg......etkeklpeaseiseeakdllkkllkkdpkkRltaeel 258
                 t +pp+++ k k+ +  ++ ++++     +        + + +++++++ +++ l k+++++dp++R+ +  +
  KOO21667.1 296 TLRPPYYALKCKTAM--DIVRVVQRG---EvspvqvLIDDTDRREYKCPASILALAKQCCRRDPEQRPDMPAI 363
                 *******66555422..222212222...122243456889999999*********************98766 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  144.0   0.0   1.3e-45   4.8e-42       1     257 [.      99     365 ..      99     367 .. 0.84

  Alignments for each domain:
  == domain 1  score: 144.0 bits;  conditional E-value: 1.3e-45
                  EEEEEEEEEESSEEEEEEEEETTTTSSEEEEEEEEESTTSSHHH..HHHHHHHHHHHHTS-BTTB--EEEEEE.SSSSEEEEEE--TTEBHHHHHHHT CS
  Pkinase_Tyr   1 lelgkklGeGafGkVvegtlkgekekkevkVavKtlkeeateee..keelleeakimkklkhpnivkllgvct.keepllivteyvkgGdLlkfLrkk 95 
                  l++ +klGeG+fG+V+ ++ k       + +avK+l+e+ +++    +++l+e ++m++l+hpn+v +lg+ t + +++ iv+e+++  +Ll+ L+++
   KOO21667.1  99 LKILEKLGEGTFGTVHACSFK------ATPCAVKQLREDRESSAalLADMLQEHDTMMTLRHPNVVLMLGITTdNVQRVGIVLELLEI-SLLELLHST 189
                  67899****************......99*******998887776689*************************6677799******98.677888887 PP

                  ...CTTTSBHHHHHHHHHHHHHHHHHHHHTTEEEST-SGGGEEEEETTEEEE-STTTHEETTTSSEEEETTSSTSGGGGS-HHHHHHSEEEHHHHHHH CS
  Pkinase_Tyr  96 ...ekekltlkdllsfalqvAkGmeyLeskklvHrdlaarNvLlsenkvvkisDfGLardiekddeyvkkeeaklpvkWmapEslkekkftsksDvWs 190
                     ++ ++   +lls+a +vAkG++yL+ ++l+Hrdl   NvLls++ v+k++DfG + +  k  +  + e+ +    +mapE+ + +  + + DvWs
   KOO21667.1 190 aeyREYRTWRASLLSIASDVAKGVAYLHFNNLLHRDLKPGNVLLSDSWVAKVADFGSSAKG-KPGSAAEGEGIHGTPPYMAPEVARGEAHSAALDVWS 286
                  5444555666789*******************************************99998.6666677888888999******************** PP

                  HHHHHHHHHTTSSGTTTTS...HHHHHHHHHHTTEE..........S-BBTTSBHHHHHHHHHHT-SSGGGS--HHHHHH CS
  Pkinase_Tyr 191 fGvllwEiftlgespypgl...kneevleklkegkr..........lekpekcpeelyelmkkcweedpeeRptfselve 257
                  fG ll  ++t  + py  l   +++++++ +++g+            ++  kcp+++  l k+c ++dpe+Rp++ ++ +
   KOO21667.1 287 FGCLLVHMAT-LRPPYYALkckTAMDIVRVVQRGEVspvqvliddtDRREYKCPASILALAKQCCRRDPEQRPDMPAIAD 365
                  **********.57787777223344556666666652222222221345678***********************99875 PP

>> Pkinase_fungal  Fungal protein kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.6   0.0   1.3e-09   4.7e-06     306     400 ..     200     287 ..     191     295 .. 0.88

  Alignments for each domain:
  == domain 1  score: 25.6 bits;  conditional E-value: 1.3e-09
  Pkinase_fungal 306 kellealrDaIkghrsLflkagiLHrDiSenNilitdskkegerkglLiDLDlakelsddssesgarertGTleFmaievlkgeeHsyrhDLESf 400
                       ll+   D+ kg   L+   ++LHrD   +N+l+      ++    ++D+    + +  s+++g +   GT+++ma ev +ge Hs   D+ Sf
      KOO21667.1 200 ASLLSIASDVAKGVAYLH-FNNLLHRDLKPGNVLLS-----DSWVAKVADFGSSAKGKPGSAAEG-EGIHGTPPYMAPEVARGEAHSAALDVWSF 287
                     56899999**********.99***************.....668889*****9999997666666.7889*************99******9998 PP

>> Kinase-like  Kinase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.0     3e-06     0.011     141     260 ..     197     311 ..     168     333 .. 0.72

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 3e-06
  Kinase-like 141 letiarlllTlqlirlaanLqakglvhgkftvdnllldekgglmlggftaLvragtkvvlsevekgf.aPpEllgsrggytrknktkmthkldaWqlG 237
                     ++ l +  ++ + +a+L+++ l+h ++++ n+ll      ++ +f++  + g+ + ++e e  +  Pp +  +       +    + +ld+W  G
   KOO21667.1 197 TWRASLLSIASDVAKGVAYLHFNNLLHRDLKPGNVLLSDSWVAKVADFGSSAK-GKPGSAAEGEGIHgTPPYMAPE-VA----RGEAHSAALDVWSFG 288
                  44455556677788889*********************************876.5556657777666245555555.33....5667899******** PP

  Kinase-like 238 lviyriwclklPltlateeakee 260
                       ++ l  P    + +   +
   KOO21667.1 289 CLLVHMATLRPPYYALKCKTAMD 311
                  *******9999987666555555 PP

>> APH  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   2.7e-05     0.098     160     199 ..     202     250 ..     119     253 .. 0.74
   2 ?   -2.1   0.0      0.81   2.9e+03      30      69 ..     299     338 ..     295     367 .. 0.76

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 2.7e-05
                 --S...........SS-EEEE-SS-SGGGEEEC..TTEEEEE---TT-EEE CS
         APH 160 lpg...........elptvllHgDlhpgNllvdpddgrvtGviDfedaglg 199
                 l++                llH+Dl+pgN+l+   d  v  v Df+ +  g
  KOO21667.1 202 LLSiasdvakgvayLHFNNLLHRDLKPGNVLLS--DSWVAKVADFGSSAKG 250
                 33334455555666777789*************..7777788888876655 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 0.81
                 TTS-HHHHHHHHHHHHHHHHTT-.B--B-CTTBS-EEETTE CS
         APH  30 paraaeeirrevallrlLakagv.pvPevlagdtddeeigl 69 
                 p+++a ++    ++ r++++ +v pv ++++ dtd+ e+  
  KOO21667.1 299 PPYYALKCKTAMDIVRVVQRGEVsPVQVLID-DTDRREYKC 338
                 4458889999999999999999999988888.666665554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (584 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       404  (0.0225333); expected 358.6 (0.02)
Passed bias filter:                      312  (0.017402); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.56u 0.30s 00:00:00.86 Elapsed: 00:00:00.45
# Mc/sec: 3937.12
//
Query:       KOO21668.1  [L=1565]
Description: sperm flagellar protein 2 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.8e-05   23.8   0.0     0.0099   16.0   0.0    3.1  3  ADK            Adenylate kinase
    0.00012   22.1   0.0    0.00042   20.4   0.0    2.0  2  CH_2           CH-like domain in sperm protein
  ------ inclusion threshold ------
      0.032   14.4   0.0      0.063   13.5   0.0    1.5  1  CH             Calponin homology (CH) domain
       0.11   12.5   0.1       0.37   10.8   0.0    2.0  2  ADK_lid        Adenylate kinase, active site lid
        5.6    7.6   7.8        2.1    9.0   0.0    3.4  3  F420_oxidored  NADP oxidoreductase coenzyme F420-dependent


Domain annotation for each model (and alignments):
>> ADK  Adenylate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.5   0.0      0.33   1.2e+03       1      30 [.     621     650 ..     621     668 .. 0.79
   2 !   16.0   0.0   2.8e-06    0.0099      55      96 ..     714     757 ..     708     762 .. 0.88
   3 ?    3.2   0.0     0.023        84     103     146 ..     792     878 ..     788     882 .. 0.95

  Alignments for each domain:
  == domain 1  score: -0.5 bits;  conditional E-value: 0.33
                 EEESTTSSHHHHHHHHHHHHTSEEEEHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
         ADK   1 llGaPgaGKGtqaeklvkkyglahlstGdl 30 
                 llG P +G   qa+klv+++ l  +   ++
  KOO21668.1 621 LLGRPYSGTSLQAQKLVTSHRLFAILPAEV 650
                 79***************9988877655555 PP

  == domain 2  score: 16.0 bits;  conditional E-value: 2.8e-06
                 --HHHHHHHHHHHHHCH..GTTTEEEEESB-SSHHHHHHHHHHH CS
                 xxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxx RF
         ADK  55 vpdevvvklvkeeleke..dkkkgfllDGfPRtveqaealeell 96 
                 vpd+v+v+l+  ++e+       gf+lD fP+tv+qa  le+ l
  KOO21668.1 714 VPDDVLVGLIVGAIEAIdhVSYAGFVLDDFPKTVAQALLLEKAL 757
                 9************9987435678****************99976 PP

  == domain 3  score: 3.2 bits;  conditional E-value: 0.023
                 ESEEEEEE--HHHHHHHHHT...........................................GSHHHHHHHHHHHHHHHHHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxx...........................................xxxxxxxxxxxxxxxxxxxxxxxx RF
         ADK 103 ldlvleldvpeevlveRltg...........................................DneetvkkRletykkqtkplidyy 146
                 ld+vl+ld+pee+  +R +g                                           D e t+   l +yk++ ++l ++y
  KOO21668.1 792 LDCVLRLDLPEETARRRALGrrldpktgtiyhlefeppqetedelgptfdgingrlvhvegaaDAEATLPMALVAYKDAEAALAEWY 878
                 799****************99************************************************************999999 PP

>> CH_2  CH-like domain in sperm protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.4   0.0   1.2e-07   0.00042       4      95 ..       7      99 ..       4     100 .. 0.90
   2 ?   -3.8   0.0         4   1.4e+04      61      91 ..     273     305 ..     267     306 .. 0.74

  Alignments for each domain:
  == domain 1  score: 20.4 bits;  conditional E-value: 1.2e-07
        CH_2  4 Wlqs.ldls.rsvknlkrdfsdGvlvAeilkkyypklvdlhnysngsslaaklnNWetLekvlkklgiklskelieevasekpgaaeklLsely 95
                W ++ l+ s r++++++ d+++G+l++ +l ++     +  + +++++ + k++N + +++ l  lg+k++++l++++++e++g+  +++++l+
  KOO21668.1  7 WANEtLPSScRQIDHFEGDLCNGYLLGVLLDEHGLL-PQGTQLQDSEAPSVKVANLTAIQQPLLDLGVKFNSKLANDLMTETKGVGINMMYQLK 99
                666654444267889****************99988.999*******************99999***************************996 PP

  == domain 2  score: -3.8 bits;  conditional E-value: 4
        CH_2  61 ekvlkklgik..lskelieevasekpgaaeklL 91 
                 e +l++l+ +   s+++++++++ + gaae+l+
  KOO21668.1 273 ESTLRRLQSDgpSSDDAAADTMRVEVGAAEHLM 305
                 556666555433678889999999999999997 PP

>> CH  Calponin homology (CH) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.0   1.8e-05     0.063       6      70 ..       3      66 ..       1     100 [. 0.71

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 1.8e-05
                HHHHHHHHHHTTSTTSSTTSCHHHHHTTSHHHHHHHHHH....STTTSSGGGSTTTHHHHHHHHHHHHH CS
          CH  6 ellrWinshleeagpkvkvedfeedlrDGvlLckLlnkl....apglvdkkklnksefkkleNinlald 70
                 l +W n++l   ++++++++fe dl++G lL  Ll+ +    +    +++  +  +  k+ N++   +
  KOO21668.1  3 LLKAWANETL--PSSCRQIDHFEGDLCNGYLLGVLLDEHgllpQ--GTQLQDSE-APSVKVANLTAIQQ 66
                6889******..56999*******************99888542..33332221.15666666665444 PP

>> ADK_lid  Adenylate kinase, active site lid
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.0   0.2       4.4   1.6e+04      16      24 ..     785     793 ..     783     795 .. 0.87
   2 ?   10.8   0.0    0.0001      0.37       1      21 [.     812     832 ..     812     835 .. 0.92

  Alignments for each domain:
  == domain 1  score: -4.0 bits;  conditional E-value: 4.4
                 B--SSTTB- CS
     ADK_lid  16 npPkveglC 24 
                 +pP+v+gl+
  KOO21668.1 785 KPPRVPGLD 793
                 79*****98 PP

  == domain 2  score: 10.8 bits;  conditional E-value: 0.0001
                 EEE-TTT--EEETTTB--SST CS
     ADK_lid   1 RrvCpkCGrsYhvvfnpPkve 21 
                 Rr  pk G++Yh++f pP++ 
  KOO21668.1 812 RRLDPKTGTIYHLEFEPPQET 832
                 9999**************975 PP

>> F420_oxidored  NADP oxidoreductase coenzyme F420-dependent
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.0   0.0   0.00058       2.1       9      62 ..     208     258 ..     204     281 .. 0.84
   2 ?   -1.9   0.2       1.5   5.4e+03      40      83 ..     428     469 ..     407     476 .. 0.69
   3 ?    0.8   0.8      0.21   7.4e+02      27      63 ..     654     688 ..     644     712 .. 0.77

  Alignments for each domain:
  == domain 1  score: 9.0 bits;  conditional E-value: 0.00058
                    HHHHHHHHHHHHTTS-GGCEEEEEESSCCCHHHHHHHHC-EEECECHHHHHHH- CS
  F420_oxidored   9 nmgealasgllaagaqpheivvansrnpekaeelaeelgvkvtavdneeaaeea 62 
                    + g+ l+s ++a g+++h+i ++ +r++++ ++l+ el v++++  ++++a+  
     KOO21668.1 208 HEGQRLMSEWQADGYAKHQINLT-RRKEDEKAKLRFELTVRTKH--AATLAKTH 258
                    57999****************55.****9999998888766665..66666655 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 1.5
                    HHHHHHHC-EEECECHHHHHHH-SEEEE-S-HHHHHHHHHHCGH CS
  F420_oxidored  40 eelaeelgvkvtavdneeaaeeadvvvlavkpedveevlselak 83 
                    e++++e+  ++      eaa+e++    av  +++e++++ +a+
     KOO21668.1 428 EHARQEYMERLAR--EREAAAENESARQAVTRQKHEATCRRIAE 469
                    4556666655555..56666678888888888888888887744 PP

  == domain 3  score: 0.8 bits;  conditional E-value: 0.21
                    CEEEEEESSCCCHHHHHHHHC-EEECECHHHHHHH-S CS
  F420_oxidored  27 eivvansrnpekaeelaeelgvkvtavdneeaaeead 63 
                    ++  a++r  e+++++++++ +++++ +++eaa+ a 
     KOO21668.1 654 SVA-ACKRYDEQLAATKAAAAAGLEG-EAAEAAAAAA 688
                    456.999************9999999.6677665443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1565 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1244  (0.0693848); expected 358.6 (0.02)
Passed bias filter:                      401  (0.022366); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.98u 0.27s 00:00:01.25 Elapsed: 00:00:00.47
# Mc/sec: 9999.85
//
Query:       KOO21669.1  [L=151]
Description: hypothetical protein Ctob_000943 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (151 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       479  (0.0267165); expected 358.6 (0.02)
Passed bias filter:                      386  (0.0215294); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.44u 0.24s 00:00:00.68 Elapsed: 00:00:00.43
# Mc/sec: 1064.53
//
Query:       KOO21670.1  [L=202]
Description: abhydrolase domain-containing protein 11 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    6.9e-09   36.6  10.1    8.9e-09   36.3  10.1    1.0  1  Abhydrolase_6    Alpha/beta hydrolase family
    1.8e-07   31.1   0.0    1.5e-06   28.1   0.1    1.9  2  Abhydrolase_1    alpha/beta hydrolase fold
    0.00011   21.6   0.1    0.00044   19.6   0.1    1.9  2  Hydrolase_4      Serine aminopeptidase, S33
     0.0039   15.9   0.1     0.0054   15.5   0.1    1.2  1  Ndr              Ndr family
     0.0039   17.1   0.1       0.15   11.9   0.1    2.1  2  Ser_hydrolase    Serine hydrolase
  ------ inclusion threshold ------
      0.015   15.0   0.1      0.017   14.8   0.1    1.5  1  Esterase         Putative esterase
      0.032   14.0   0.0      0.041   13.6   0.0    1.1  1  PGAP1            PGAP1-like protein
      0.054   12.4   0.0      0.073   12.0   0.0    1.2  1  Chlorophyllase2  Chlorophyllase enzyme
       0.13   12.1   0.0       0.23   11.3   0.0    1.4  1  Lipase_3         Lipase (class 3)
        0.2   11.4   0.0        0.3   10.9   0.0    1.2  1  Abhydrolase_5    Alpha/beta hydrolase family


Domain annotation for each model (and alignments):
>> Abhydrolase_6  Alpha/beta hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.3  10.1   4.9e-12   8.9e-09      51     219 ..       3     195 ..       2     196 .. 0.51

  Alignments for each domain:
  == domain 1  score: 36.3 bits;  conditional E-value: 4.9e-12
                    HHHHHHHCCTT..TTSEEEEEETCHHHHHHH..HHHCC..EE.EEES-..----TTT......S----TTHHHHHH.....TT-C......CCCHC CS
  Abhydrolase_6  51 adlaalldelaagggpvvlvGHSlGGalala..aaplalvvg.vlldppptalpagl......laaalelllalla.....llrl......lawls 126
                    +d+++lld+l+  + ++vl GHSlGG +++a  +a+ a+v   ++++    ++p+ +       +a l++++a +a     l         +a++ 
     KOO21670.1   3 EDIVELLDSLG--AERAVLCGHSLGGKVVMAaaLAHPARV-EqLIVAD---IAPIEYsmahegWRANLTIMEAMGAlpeavL--GtrgdadAALRE 90 
                    68899*****5..9999*********87777435555554.3588888...5555555544443333333332222211220..122222222222 PP

                    CH.........S-HSCCCCHHHCCCCHCHCCCGHHHHCC.....HHCHTTCCHHTT-TTGC...EEECTT-C.....HHHHCHHCCCHSTTEEETC CS
  Abhydrolase_6 127 re.........plprlfladedadaawrarlarlaalla.....glgllpaaawadlpvpl...lvlggeDp.....lvprllerllaqagarlpv 200
                     +         +   l+ + +++++++r +l +l a +      g+    +a+++++p++l   l+ g + p       ++ ++rl     +   +
     KOO21670.1  91 -AgvaeagiraF---LLQNLVPEERRFRLNLHGLIAAARtgvlaGW----PAHLPPAPATLparLIAGRRSPyctaaGAREAFDRLFP-GAEPQ-T 176
                    .13444332222...2222333344555555444444333221122....33444444444664575677775443344455666665.55554.8 PP

                    E...SSS-HHHHSHHHHHH CS
  Abhydrolase_6 201 vlpgaGHlphleepdevae 219
                     +  aGH++h e+pde+a+
     KOO21670.1 177 AWLEAGHWVHAEKPDEFAR 195
                    8999**************8 PP

>> Abhydrolase_1  alpha/beta hydrolase fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.1   0.1   8.2e-10   1.5e-06      59     107 ..       1      51 [.       1      68 [. 0.86
   2 ?    1.1   0.0      0.14   2.4e+02     213     257 .]     144     190 ..     100     190 .. 0.83

  Alignments for each domain:
  == domain 1  score: 28.1 bits;  conditional E-value: 8.2e-10
                    HHHHHHHHHHHCTTSSEEEEEETHHHHHHHHHHHHHGGGEEEEEEESE..C CS
  Abhydrolase_1  59 vaddldrildalgddkltlvGhSmGGmialayaaeyperVkalvllga..i 107
                    +a+d+  +ld+lg ++ +l GhS+GG +++a+a+ +p rV  l+  +   i
     KOO21670.1   1 MAEDIVELLDSLGAERAVLCGHSLGGKVVMAAALAHPARVEQLIVADIapI 51 
                    689**************************************9998877443 PP

  == domain 2  score: 1.1 bits;  conditional E-value: 0.14
                    EEEEEEETTCSSSCH.HHHHHHHHCHTS.EEEEEEETCSSSHHHHSH CS
  Abhydrolase_1 213 ptlvisgtsDplvpp.kaledlaqllpk.krlvvisdagHlaflegp 257
                    p+ +i+g+  p+ +  +a e +++l+p+ +   +   agH+++ e+p
     KOO21670.1 144 PARLIAGRRSPYCTAaGAREAFDRLFPGaEPQTAWLEAGHWVHAEKP 190
                    67788899999999989999999999997667777999***998875 PP

>> Hydrolase_4  Serine aminopeptidase, S33
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.6   0.1   2.5e-07   0.00044      69     107 ..      12      46 ..       1      91 [. 0.84
   2 ?   -0.1   0.0      0.25   4.5e+02     190     217 ..     141     168 ..     123     189 .. 0.83

  Alignments for each domain:
  == domain 1  score: 19.6 bits;  conditional E-value: 2.5e-07
  Hydrolase_4  69 vkeehpelplfllGhSmGGliallyllrypdkvaglils 107
                  +      ++ +l+GhS+GG ++++++l +p++v+ li++
   KOO21670.1  12 LG----AERAVLCGHSLGGKVVMAAALAHPARVEQLIVA 46 
                  44....34679***********************99975 PP

  == domain 2  score: -0.1 bits;  conditional E-value: 0.25
  Hydrolase_4 190 itlPllllhGeaDkvvdpeasrelyerl 217
                  +tlP  l+ G + + +  +++re+++rl
   KOO21670.1 141 ATLPARLIAGRRSPYCTAAGAREAFDRL 168
                  679999***************9999987 PP

>> Ndr  Ndr family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.1     3e-06    0.0054      85     139 ..       1      55 [.       1      73 [. 0.91

  Alignments for each domain:
  == domain 1  score: 15.5 bits;  conditional E-value: 3e-06
                 HHTTHHHHHHHHT---EEEEEETHHHHHHHHHHHHSGGGEEEEEEES---S---H CS
         Ndr  85 ladqllavldhfklksviglGvgaGAyilarfalkhperveglvLinitskaagw 139
                 +a++++++ld +  + ++  G   G  +++  al+hp rve l+  +i +   ++
  KOO21670.1   1 MAEDIVELLDSLGAERAVLCGHSLGGKVVMAAALAHPARVEQLIVADIAPIEYSM 55 
                 699******************************************9999877766 PP

>> Ser_hydrolase  Serine hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.9   0.1   8.6e-05      0.15      55     125 ..      15      83 ..       5     100 .. 0.76
   2 ?    3.3   0.0     0.038        68     107     136 ..     135     164 ..     126     194 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 8.6e-05
                    TTEEEEEETCHHHHHHHHHHHTTSSSEEEEEEET--SGGS..TT.GGGCGCTTS-SSHHCCHCEEEEETTB CS
  Ser_hydrolase  55 ekvvlvAHSlgclavlhaaelqlakkvagalLVapadveeeaaklaelaefaplpreklpfpslvvaSenD 125
                    e++vl  HSlg  +v++aa l+++++v++ l+Va  ++ e   +++  ++  ++ +    +p++v+  + D
     KOO21670.1  15 ERAVLCGHSLGGKVVMAAA-LAHPARVEQ-LIVADIAPIEYSMAHEGWRANLTIMEAMGALPEAVLGTRGD 83 
                    5679*************99.9******98.56777666666666666666666666667777777666666 PP

  == domain 2  score: 3.3 bits;  conditional E-value: 0.038
                    TS-SSHHCCHCEEEEETTBTTC-HHHHHHH CS
  Ser_hydrolase 107 plpreklpfpslvvaSenDpyvsfeeaeel 136
                    +lp  ++ +p++++a +  py++ + a+e 
     KOO21670.1 135 HLPPAPATLPARLIAGRRSPYCTAAGAREA 164
                    67889999***************9998875 PP

>> Esterase  Putative esterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.8   0.1   9.5e-06     0.017     117     142 ..      17      42 ..       5     192 .. 0.89

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 9.5e-06
                 EEEEEETHHHHHHHHHHHCSTTTCCE CS
    Esterase 117 ravaGqSmGGlgALilalkhpdrFgs 142
                  ++ G+S+GG + + +al hp r  +
  KOO21670.1  17 AVLCGHSLGGKVVMAAALAHPARVEQ 42 
                 6899*****************99765 PP

>> PGAP1  PGAP1-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.0   2.3e-05     0.041      90     134 ..      14      56 ..       3      76 .. 0.77

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 2.3e-05
       PGAP1  90 ptsviliGHSmGGivaraaltlknyikqsvntiltla.sPhalppl 134
                  ++ +l GHS+GG+v  aa+      +  v+++++ + +P++++ +
  KOO21670.1  14 AERAVLCGHSLGGKVVMAAALA---HPARVEQLIVADiAPIEYSMA 56 
                 567799********98444333...356899999988899988776 PP

>> Chlorophyllase2  Chlorophyllase enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   4.1e-05     0.073      91     159 ..      16      80 ..      11      97 .. 0.69

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 4.1e-05
  Chlorophyllase2  91 klalsgHSrGgktafalalgkaktslkfsaligvdPvagaskskqtepkiLtyepesfnlkmpvlviGt 159
                      + +l gHS Ggk+++a al + + +++   +  + P+++   ++  +++ Lt +      ++p +v+Gt
       KOO21670.1  16 RAVLCGHSLGGKVVMAAALAHPA-RVEQLIVADIAPIEYSMAHEGWRAN-LTIMEAMG--ALPEAVLGT 80 
                      67899***************988.4444444556688875544444433.44443333..466666666 PP

>> Lipase_3  Lipase (class 3)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   0.00013      0.23      53      83 ..       3      33 ..       1      55 [. 0.81

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00013
                HHHHHHHHHTT-EEEEEEEETHHHHHHHHHH CS
    Lipase_3 53 kelkrllekypeysivvtGHSLGgalAlLaa 83
                +++ +ll++    + v++GHSLGg + + aa
  KOO21670.1  3 EDIVELLDSLGAERAVLCGHSLGGKVVMAAA 33
                677888888899999*********8755444 PP

>> Abhydrolase_5  Alpha/beta hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   0.00016       0.3      56      91 ..      14      50 ..       2      75 .. 0.69

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00016
  Abhydrolase_5 56 lekfvvgGhslGGvvasrfaaee.ekiegvvflasYP 91
                    e+ v+ GhslGG v+   a  +  ++e ++     P
     KOO21670.1 14 AERAVLCGHSLGGKVVMAAALAHpARVEQLIVADIAP 50
                   57889********666555555525778777655555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (202 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       375  (0.0209158); expected 358.6 (0.02)
Passed bias filter:                      314  (0.0175135); expected 358.6 (0.02)
Passed Vit filter:                        47  (0.00262145); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.42u 0.24s 00:00:00.65 Elapsed: 00:00:00.39
# Mc/sec: 1539.03
//
Query:       KOO21671.1  [L=703]
Description: vacuolar protein sorting-associated protein 52-like protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   2.3e-112  376.4   0.0   2.8e-112  376.1   0.0    1.1  1  Vps52     Vps52 / Sac2 family
    1.9e-08   33.2   5.9    4.1e-07   28.8   5.2    2.8  3  Sec3_C    Exocyst complex component Sec3
     0.0036   17.4   0.9     0.0036   17.4   0.9    2.2  2  COG2      COG (conserved oligomeric Golgi) complex component,
  ------ inclusion threshold ------
      0.099   12.7   2.1        5.7    7.0   0.2    2.5  2  DUF1664   Protein of unknown function (DUF1664)
       0.15   12.1   0.0       0.33   11.0   0.0    1.6  1  RAG2_PHD  RAG2 PHD domain


Domain annotation for each model (and alignments):
>> Vps52  Vps52 / Sac2 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  376.1   0.0  7.9e-116  2.8e-112       2     505 ..      54     577 ..      53     580 .. 0.91

  Alignments for each domain:
  == domain 1  score: 376.1 bits;  conditional E-value: 7.9e-116
       Vps52   2 edksiedyikeseniaslhnqiaaidsvleqledlLeeFqsdlssissdikklqekSnelqlrLenrkaveaklsklvddlivppelidvIiegkvnee 100
                 e+ si+dyi ese +a lh qi+++d+vl+ +e++L  Fq dlssis +ik lq  S +++++L+nrka+ea+ls++++ ++v p+li  I +++vne+
  KOO21671.1  54 ERDSIQDYICESESLAGLHTQIRQCDTVLDSMESMLRGFQGDLSSISAQIKYLQDESLAMNVKLRNRKAAEAELSSFIQQIVVTPDLISNICDADVNET 152
                 899************************************************************************************************ PP

       Vps52 101 siaekleilnkkksaekdqsvkslkalkDvkklldkLrnkalekireyivqkiktlRkpkvnvqiiqn.kLlkvkkifeFllennrklalelrqaYidT 198
                 ++a  le+ +k  +  k++s+k + a+ D+ ++l+kLr+k ++kire++++++ +lRk+++n+qi+q+ +Llk+k +++Flle+  ++ale+++ Y  T
  KOO21671.1 153 YLAYVLELNKKV-TFSKQESTKMTSACMDMAPELEKLRTKSVQKIREFLLERVGMLRKKMTNIQILQQsVLLKYKGLYHFLLEHAPETALEVKEVYTTT 250
                 ***999866555.5566778999*********************************************9****************************** PP

       Vps52 199 mkkiyleyfrsYirsLtklqfeeietkddLigvedtak..........klffs...........ktaslkkrnkiftigkRlkilkaqldapvlvphia 276
                 m+ iyl   + Y   L + + e +++  dL g e+ +           + ff            k +   ++++ +++g+R++il+ q+  p l+p + 
  KOO21671.1 251 MSAIYLVKVKGYLAELSRARTEPATKS-DLLGAEEWNAagpslstasvSSFFGglssalgtggpK-PATARGDQAYKLGERINILE-QVRDPPLIPAVL 346
                 ********************9998877.*****9988868877777773333366669**99955.666789**************.999999988876 PP

       Vps52 277 ek.........nttkyyiEalfrslelalldnatsEYlFlkefFavsgdqaeeifeqifektlslatkyleqlisdcyDaigvllsIriinrlqleaer 366
                 ++         ++    +Ea+frs  ++l+d a sE  F+ efF       ++ feqif+k l    ++le+++ +++Dai+ +l++ ++ rl  + + 
  KOO21671.1 347 QQggvpgssssGEGGIFYEAVFRSYSMLLIDMARSEHSFMLEFFGD-----ADAFEQIFGKGLFHCMEHLEHYLISTWDAIACVLVLELMPRLTETLSA 440
                 541111111114556789**************************99.....999********************************************* PP

       Vps52 367 rrvPvldsylnsvlillWPRFqlvldlnveSlrkadittlvekdtrPHeltrryaeflsslvtlsvtvkeeeverllerlqreveslil.rlaklfkkk 464
                  ++P+l +++ + ++l+W RF+++++ +v Sl   +++  +  +++PH++ rryae+ ssl +l+      +++     l++eve l++ rla l  ++
  KOO21671.1 441 TQLPLLSNFFHQGQALVWSRFKQIMEAHVASLATVAPKAPP--EVHPHYIARRYAELASSLRKLNPPQYGPQMAAIHRALRVEVERLLQeRLAGLLATR 537
                 *********************************99999877..9***********************9999***************98748******** PP

       Vps52 465 keqlvfLinNYdlllgvLkelsldlskeqedfqeklnenae 505
                 k+q+ fL+n Y+l+ +  +e+++ +  e   f++ l +  +
  KOO21671.1 538 KSQSAFLVNSYELIASTFNERGARG-DESARFEQLLDSVKA 577
                 ******************9998764.566778777776655 PP

>> Sec3_C  Exocyst complex component Sec3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.8   5.2   1.1e-10   4.1e-07      10     259 ..      46     271 ..      38     300 .. 0.84
   2 ?   -2.8   0.0      0.43   1.5e+03     433     466 ..     440     474 ..     399     482 .. 0.63
   3 ?   -2.2   0.0      0.28     1e+03     579     699 ..     569     677 ..     562     678 .. 0.61

  Alignments for each domain:
  == domain 1  score: 28.8 bits;  conditional E-value: 1.1e-10
      Sec3_C  10 LsreLskleaanikrllesdkkveelkkdidkalkecdeldalltlysveLstlsedieyIEsqnngLQvksaNqklLykeLeellstvslsesdleaL 108
                 +++ L  +e+++i++ + + ++ + l ++i ++ + +d ++++l  ++ +Ls++s +i+y  + +  + vk +N+k   +eL++ ++++ + ++ ++ +
  KOO21671.1  46 VESALRSVERDSIQDYICESESLAGLHTQIRQCDTVLDSMESMLRGFQGDLSSISAQIKYLQDESLAMNVKLRNRKAAEAELSSFIQQIVVTPDLISNI 144
                 678899********************************************************************************************* PP

      Sec3_C 109 keaelssanglealeealeaLfkAltaIdsdlkdlesdlgemravkerrerYekvsssFlrrlveflekkfksaekelgkdldsatkkklslekhlevl 207
                  +a+++++       + + +L k +t       ++++  +  +a  +   + ek +++ ++++ efl +++ +++k+            ++++  +   
  KOO21671.1 145 CDADVNETY-----LAYVLELNKKVTF------SKQESTKMTSACMDMAPELEKLRTKSVQKIREFLLERVGMLRKK-----------MTNIQ--ILQQ 219
                 *****8888.....4445566666666......223333234566777788999999999**********9777444...........23333..3346 PP

      Sec3_C 208 nlLliYsgLilflKevdaekfeallqqYnasiskvYereikeffeslkkslk 259
                 + Ll+Y+gL +fl e  +e+  ++ + Y+  +s +Y  ++k  +++l ++ +
  KOO21671.1 220 SVLLKYKGLYHFLLEHAPETALEVKEVYTTTMSAIYLVKVKGYLAELSRART 271
                 8999********************************9999988887776655 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 0.43
      Sec3_C 433 snqs.flssvlqkllekvkslfkkfvdeqvesiee 466
                  +q  +ls+++++ ++ v s fk+ ++  v+s+ +
  KOO21671.1 440 ATQLpLLSNFFHQGQALVWSRFKQIMEAHVASLAT 474
                 24445777777777777777777777776666554 PP

  == domain 3  score: -2.2 bits;  conditional E-value: 0.28
      Sec3_C 579 kqlfdeelelYvdavlrrplgkLieFvegveellqtkkaaeissqaaySkqalkkilskYtakeirkgieklykrvekhfledadravleeeLlqkvws 677
                 +ql d  + l v++ l    g Li++++ +e ll t  +a+ s+     +++   ++ ++     ++gie++ + v k f         +  L q +++
  KOO21671.1 569 EQLLDSVKALFVEECLAVDYGALINYIKTTEPLLITGGQADRSRVDVGGMEH---LIRSFYD-TWKQGIETVNREVMKSF--------PNFHLGQDILK 655
                 5667777777777777777777777777777777774444444444333333...3333221.24677777777777777........36667777777 PP

      Sec3_C 678 eleeefiskylrlekiiqkvYd 699
                 +  ++ + +y+r+ +++++ Y+
  KOO21671.1 656 QVLTQLLLYYTRFLDLVKTAYP 677
                 7777777777777777777775 PP

>> COG2  COG (conserved oligomeric Golgi) complex component, COG2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.4   0.9     1e-06    0.0036      11     103 ..      16     107 ..      12     141 .. 0.79
   2 ?   -2.5   0.2       1.5   5.2e+03      73      92 ..     180     200 ..     157     220 .. 0.51

  Alignments for each domain:
  == domain 1  score: 17.4 bits;  conditional E-value: 1e-06
        COG2  11 pdFdpdqFvselrhgvpLeslrrdLeaylkllekellelvnedyadFvslSghLvglqeeleevesplaaarkkvesvreklsereeeveskl 103
                 ++Fd d+F  ++  +  L +   dL++y+ ++e++l ++ ++ ++d++  S++L gl +++++ ++ l ++ + ++ ++  ls  +++++   
  KOO21671.1  16 DEFDIDEFRADTAVQEALSK-GTDLRQYALEVESALRSVERDSIQDYICESESLAGLHTQIRQCDTVLDSMESMLRGFQGDLSSISAQIKYLQ 107
                 56777777555555555544.5799999999999998777778999*****************999999999999999999999998887544 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 1.5
        COG2  73 evesplaaar.kkvesvrekl 92 
                  +  +l+++r k v+++re l
  KOO21671.1 180 DMAPELEKLRtKSVQKIREFL 200
                 333333333312234444444 PP

>> DUF1664  Protein of unknown function (DUF1664)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.6   0.1    0.0086        31      68     117 ..      68     117 ..      45     122 .. 0.74
   2 ?    7.0   0.2    0.0016       5.7      38      85 ..     173     221 ..     168     231 .. 0.90

  Alignments for each domain:
  == domain 1  score: 4.6 bits;  conditional E-value: 0.0086
     DUF1664  68 idrvdkkldeqkeiskeikeevtevredlseigedvesvkeavegleskl 117
                 ++ + +++ ++  +  ++++ +   ++dls+i+ +++ +++    ++ kl
  KOO21671.1  68 LAGLHTQIRQCDTVLDSMESMLRGFQGDLSSISAQIKYLQDESLAMNVKL 117
                 55666777777777777777777777777777777777776665555555 PP

  == domain 2  score: 7.0 bits;  conditional E-value: 0.0016
     DUF1664  38 slsdavesvskqleqvs.eslaatkrhLssridrvdkkldeqkeiskei 85 
                  +++a+ +++ +le++  +s+++ ++ L +r+  + kk+ + + +++++
  KOO21671.1 173 KMTSACMDMAPELEKLRtKSVQKIREFLLERVGMLRKKMTNIQILQQSV 221
                 599************97579*******************9998888765 PP

>> RAG2_PHD  RAG2 PHD domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   9.2e-05      0.33       8      77 ..     143     212 ..     140     213 .. 0.77

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 9.2e-05
    RAG2_PHD   8 ascdvdintwvpfystelnkpamifcskgeGhwvhaqcmdlsesl..llrlseenkkyfcndhvelarglqt 77 
                 + cd d+n     y  elnk   +  sk+e   + + cmd++ +l  l   s ++ + f  + v + r+ +t
  KOO21671.1 143 NICDADVNETYLAYVLELNKK--VTFSKQESTKMTSACMDMAPELekLRTKSVQKIREFLLERVGMLRKKMT 212
                 57******9999*******97..456999999999******9765225555666677777888777776665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (703 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       658  (0.0367003); expected 358.6 (0.02)
Passed bias filter:                      462  (0.0257683); expected 358.6 (0.02)
Passed Vit filter:                        47  (0.00262145); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.69u 0.28s 00:00:00.97 Elapsed: 00:00:00.48
# Mc/sec: 4411.50
//
Query:       KOO21672.1  [L=93]
Description: hypothetical protein Ctob_000940 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    5.2e-08   32.8   0.1      7e-08   32.4   0.1    1.1  1  Complex1_LYR    Complex 1 protein (LYR family)
     0.0023   18.6   0.0     0.0029   18.3   0.0    1.1  1  Complex1_LYR_2  Complex1_LYR-like


Domain annotation for each model (and alignments):
>> Complex1_LYR  Complex 1 protein (LYR family)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.4   0.1   7.9e-12     7e-08       5      58 ..      29      81 ..      26      82 .. 0.96

  Alignments for each domain:
  == domain 1  score: 32.4 bits;  conditional E-value: 7.9e-12
  Complex1_LYR  5 sLYRalLRearkfpdyntreyfrrriRdeFrknkhvtDpekieellkkgreeLe 58
                  +LYR  LR+ + ++ ++  +  ++ +R++F ++ ++t+ e+++ ll +gr  L+
    KOO21672.1 29 KLYRDVLRALKGVDADT-AAGVKQAARERFAEHTDETNLERLRTLLVDGRHSLN 81
                  7*************999.********************************9987 PP

>> Complex1_LYR_2  Complex1_LYR-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.3   0.0   3.2e-07    0.0029       2      60 ..      28      86 ..      27      90 .. 0.92

  Alignments for each domain:
  == domain 1  score: 18.3 bits;  conditional E-value: 3.2e-07
  Complex1_LYR_2  2 lsLYrrllrelrelppelrslgdayvraefrrhkhlknpeeialflknqreYaellery 60
                    ++LYr +lr+l+    +  +  ++  r++f +h++ +n+e  +++l   r+ +  ++++
      KOO21672.1 28 RKLYRDVLRALKGVDADTAAGVKQAARERFAEHTDETNLERLRTLLVDGRHSLNEMKQF 86
                    79*********98888999999**********99999***********99999999887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (93 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       544  (0.0303419); expected 358.6 (0.02)
Passed bias filter:                      403  (0.0224776); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.37u 0.26s 00:00:00.63 Elapsed: 00:00:00.41
# Mc/sec: 685.10
//
Query:       KOO21673.1  [L=301]
Description: transgelin 2 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.9e-17   63.4   0.0    3.4e-17   62.6   0.0    1.4  1  C2        C2 domain
    3.6e-11   43.2   0.0    6.1e-11   42.5   0.0    1.3  1  CH        Calponin homology (CH) domain
     0.0019   18.4   0.0     0.0046   17.2   0.0    1.6  1  CDC24     CDC24 Calponin


Domain annotation for each model (and alignments):
>> C2  C2 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.6   0.0   5.6e-21   3.4e-17       1      97 [.      56     152 ..      56     158 .. 0.88

  Alignments for each domain:
  == domain 1  score: 62.6 bits;  conditional E-value: 5.6e-21
                 TEEEEEEEEEESSSSSSTTSSCEEEEEEEEECEEEEEE-SCSSSSSSEEEEEEEE..EESCHTTSEEEEEEEEECSSSTEEEEEEEEEEGHHHHTTHHH CS
          C2   1 gklevtvieAknLpnkdkkgssdpyvkvsldgkqkakTrviknslnPvWnekftf..evaeleeakLeveVfdndrlskddfiGkveiplstllsgeea 97 
                 g+l++   +A +L++ d +g+sdpyvk sl   + +k++vi+++lnP+W e ftf   +++  +a L+++++d+d++s+d+ +G ++i+l  l+++++ 
  KOO21673.1  56 GTLHLFLSHAVGLKALDNNGKSDPYVKFSL-AGKEVKSKVISKNLNPRWGEVFTFkgVLKDFIAAPLQLRCKDKDTFSSDK-LGDASIDLGGLARTDVV 152
                 578889999*********************.99**********************644444899************66666.********987776655 PP

>> CH  Calponin homology (CH) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.5   0.0     1e-14   6.1e-11       7      94 ..     204     297 ..     199     300 .. 0.83

  Alignments for each domain:
  == domain 1  score: 42.5 bits;  conditional E-value: 1e-14
                 HHHHHHHHHTTSTTSSTT.......SCHHHHHTTSHHHHHHHHHHSTTTSSGGGSTTTHHHHHHHHHHHHHHHHHHTTCHTTSS.-HHHHHTTSHH CS
          CH   7 llrWinshleeagpkvkv.......edfeedlrDGvlLckLlnklapglvdkkklnksefkkleNinlaldvaekklgvpkvli.eaedlvegknk 94 
                 ++ W+  ++ +  p + v       + ++ +lr+G  Lc+L+n l+pg+v   + +  +fk++eNi   l ++  +lgvp+ ++ ++ dl++ k +
  KOO21673.1 204 ATYWVATVTSCV-PPQMVgetapdeSALHAWLRSGERLCQLVNVLRPGSVGRIAKSEMPFKQMENIDAYLRACL-QLGVPQQDLfTTPDLFNAKSM 297
                 566777777664.444446777777999*********************887777777*************888.****************98866 PP

>> CDC24  CDC24 Calponin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   0.0   7.7e-07    0.0046       6      74 ..     230     295 ..     227     300 .. 0.83

  Alignments for each domain:
  == domain 1  score: 17.2 bits;  conditional E-value: 7.7e-07
       CDC24   6 lwkllrqGspLlalfNalkpeeklevdevksddlkvcKksvydFllackkeLgfedeelftisdlfsed 74 
                 l   lr G  L+ l N+l+p +  ++  +ks+   +  + +  +l ac+ +Lg+++++lft  dlf+ +
  KOO21673.1 230 LHAWLRSGERLCQLVNVLRPGSVGRI--AKSEMPFKQMENIDAYLRACL-QLGVPQQDLFTTPDLFNAK 295
                 77889****************99999..555555555667888999997.6***************876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (301 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       310  (0.0172904); expected 358.6 (0.02)
Passed bias filter:                      273  (0.0152267); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.44u 0.25s 00:00:00.69 Elapsed: 00:00:00.41
# Mc/sec: 2214.60
//
Query:       KOO21674.1  [L=321]
Description: aldehyde reductase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    9.3e-58  195.7   0.0    3.2e-57  194.0   0.0    1.7  1  Aldo_ket_red  Aldo/keto reductase family


Domain annotation for each model (and alignments):
>> Aldo_ket_red  Aldo/keto reductase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  194.0   0.0   1.8e-61   3.2e-57       2     290 ..      35     291 ..      34     293 .. 0.95

  Alignments for each domain:
  == domain 1  score: 194.0 bits;  conditional E-value: 1.8e-61
                   EEEE-SSS-ST.TS-HHHHHHHHHHHHHTT--EEE--TT-TTTHHHHHHHHHHHH-TTTGGG-EEEEEE--SSSTTSSSS-HHHHHHHHHHHHHHHT CS
  Aldo_ket_red   2 lglGtwqlgskeeiskeealellrraleaGinffDtAevYgkgqseellGealkksrkkreeviiatKvdlrdaeiksglskeniresleeslkrLg 98 
                   +glGtw      e sk e+ +++ +al aG+++fD+A+vY   ++e+++G+al++ +++r e+ i++K+      ++++ +++++re+le++l  L+
    KOO21674.1  35 IGLGTW------ESSKGEVEAAVSAALNAGYRHFDCAPVY---RNEHEVGRALAHGGVPRSELWITSKL------WNDRRRPADVREALEQTLASLQ 116
                   899999......67789***********************...**************************......********************** PP

                   -S-EEEEEE-S--TTS-...........HHHHHHHHHHHHHTTSEEEEEEES--HHHHHHHHHTTT--EEEEE-B-BTT-HHHHTTHHHHHHHTT-E CS
  Aldo_ket_red  99 tdyvDllllHrpdpslp..........sieevldaleelvkeGkiraiGvSnfsveqlekakkkkkvkivavqveynllreleeegllelckkkgvp 185
                   tdy+Dl+l+H+p ++            s++e +++le lv+eGk+r+iGvSnf    l ++++++ +k++++q+e ++   l ++ l+e+c+ +g+ 
    KOO21674.1 117 TDYLDLYLIHWPVVWARntvmkpdslaSLAECWRTLEALVDEGKVRHIGVSNFGEVELAALLSTARIKPAVNQIELHPR--LPQTALVEYCQRNGIV 211
                   ***************99*************************************88888899****************9..**************** PP

                   EEEBSTTGGGTTGTTTSS---SSSCCC-------TS-HHHHHHHHHHHHHHHHTT--HHHHHHHHHTTSTT-SEEEE--SSHHHHHHHHGGG.G--- CS
  Aldo_ket_red 186 liaysplggGlltgkyqseedkedkeprkdlkrdertsknldaaeelselakehgvslaqlalryalsqpavgivipgasnieqlednldal.elkl 281
                   + aysplg+G l+g ++                        +  ++++ela+ h vs+a++ lr+ l  +++++vip+++n+ +l +nl+    + l
    KOO21674.1 212 VTAYSPLGRGTLKGANM------------------------LSSPTVQELAARHAVSPAAVLLRWNL--QRGVVVIPKSTNPGRLAANLEEPwRFAL 282
                   *************9888........................677799********************..9*******************86438888 PP

                   -HHHHHHHH CS
  Aldo_ket_red 282 seeevaeld 290
                   s++e  +ld
    KOO21674.1 283 SADEPLALD 291
                   888766665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (321 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       472  (0.0263261); expected 358.6 (0.02)
Passed bias filter:                      416  (0.0232026); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.28s 00:00:00.72 Elapsed: 00:00:00.42
# Mc/sec: 2274.05
//
Query:       KOO21675.1  [L=107]
Description: hypothetical protein Ctob_006641 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
     0.0019   18.9   0.3     0.0031   18.2   0.3    1.4  1  zf-C2H2_4       C2H2-type zinc finger
     0.0025   18.1   0.0     0.0034   17.7   0.0    1.1  1  zf-C2H2_2       C2H2 type zinc-finger (2 copies)
  ------ inclusion threshold ------
      0.056   13.9   0.7      0.095   13.2   0.7    1.3  1  zf-C2H2         Zinc finger, C2H2 type
      0.078   12.9   0.1        0.1   12.5   0.1    1.2  1  Endonuclease_7  Recombination endonuclease VII
       0.14   12.3   0.1       0.19   11.8   0.1    1.2  1  Zf_RING         KIAA1045 RING finger


Domain annotation for each model (and alignments):
>> zf-C2H2_4  C2H2-type zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.2   0.3   8.7e-07    0.0031       3      22 ..      51      70 ..      49      71 .. 0.92

  Alignments for each domain:
  == domain 1  score: 18.2 bits;  conditional E-value: 8.7e-07
   zf-C2H2_4  3 CpiCgksFsskkaLlrHlkt 22
                C++Cg++F+s+k++l+H+++
  KOO21675.1 51 CKVCGQVFHSRKEVLKHIEK 70
                *****************975 PP

>> zf-C2H2_2  C2H2 type zinc-finger (2 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.7   0.0   9.5e-07    0.0034      48      77 ..      46      75 ..      38      84 .. 0.89

  Alignments for each domain:
  == domain 1  score: 17.7 bits;  conditional E-value: 9.5e-07
   zf-C2H2_2 48 eekleClyCekefkslealreHmkkkgHck 77
                e++l C +C++ f+s++++ +H++k gH +
  KOO21675.1 46 EDGLLCKVCGQVFHSRKEVLKHIEKTGHVR 75
                56799***********************87 PP

>> zf-C2H2  Zinc finger, C2H2 type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.7   2.6e-05     0.095       3      23 .]      51      73 ..      50      73 .. 0.91

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 2.6e-05
                ETTTTEEESSHHHHHHHHHC..C CS
     zf-C2H2  3 CpdCgksFkrksnLkrHirt..H 23
                C++Cg++F ++ +  +Hi +  H
  KOO21675.1 51 CKVCGQVFHSRKEVLKHIEKtgH 73
                *****************987555 PP

>> Endonuclease_7  Recombination endonuclease VII
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.1   2.9e-05       0.1      17      54 ..      41      77 ..      24      81 .. 0.76

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 2.9e-05
                    TT---TTS.E-TTT--EEETTS--EEEEE-TTT--.EEE CS
  Endonuclease_7 17 alleaqgg.kCaiCqerekektkalavDHdHktgkvRgl 54
                    +l +a++g  C++C +    ++++ ++ H  ktg+vR++
      KOO21675.1 41 RLRRAEDGlLCKVCGQ--VFHSRKEVLKHIEKTGHVRDP 77
                    6778888889*****7..6678999************75 PP

>> Zf_RING  KIAA1045 RING finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.1   5.4e-05      0.19      16      37 ..      45      68 ..      40      80 .. 0.73

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 5.4e-05
     Zf_RING 16 aeelypCRvCtkvfHe..gClrkl 37
                ae+ + C+vC +vfH   + l+++
  KOO21675.1 45 AEDGLLCKVCGQVFHSrkEVLKHI 68
                788899*********621455554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (107 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       458  (0.0255452); expected 358.6 (0.02)
Passed bias filter:                      417  (0.0232584); expected 358.6 (0.02)
Passed Vit filter:                        59  (0.00329076); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.37u 0.22s 00:00:00.59 Elapsed: 00:00:00.38
# Mc/sec: 853.15
//
Query:       KOO21676.1  [L=773]
Description: elongation factor g [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.2e-62  210.9   0.0    1.9e-62  210.3   0.0    1.3  1  GTP_EFTU     Elongation factor Tu GTP binding domain
    1.1e-39  134.9   0.3      2e-39  134.1   0.3    1.4  1  EFG_IV       Elongation factor G, domain IV
      2e-32  111.1   0.0      4e-32  110.1   0.0    1.5  1  EFG_II       Elongation Factor G, domain II
    3.1e-27   94.4   0.2      9e-27   92.9   0.2    1.9  1  EFG_C        Elongation factor G C-terminus
    7.4e-15   55.1   2.2    1.2e-14   54.4   0.9    2.2  2  GTP_EFTU_D2  Elongation factor Tu domain 2
    1.1e-05   25.2   0.0      2e-05   24.4   0.0    1.3  1  RF3_C        Class II release factor RF3, C-terminal domain


Domain annotation for each model (and alignments):
>> GTP_EFTU  Elongation factor Tu GTP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  210.3   0.0   6.3e-66   1.9e-62       3     194 .]      52     346 ..      50     346 .. 0.91

  Alignments for each domain:
  == domain 1  score: 210.3 bits;  conditional E-value: 6.3e-66
                 EEEEEEEESTTSSHHHHHHHHHHHTTSSCHHHHHHHHHSTHCHSHHHHHHTSCSSCEEEEEE............TTCSSEEEEEEEESSSGGGHHHHHH CS
    GTP_EFTU   3 irnigiighvDhGKtTLtdrLlyktgaiskkgekaeeervlDtlkeErergiTiksaaisle............ketkkylinliDtPGHvdFskevir 89 
                 +rn+gi++h+D+GKtT+t+r+ly+tg+++k ge++++ + +D++ +E+ergiTi+saa++++                ++++n+iDtPGHvdF+ ev+r
  KOO21676.1  52 YRNFGIMAHIDAGKTTTTERILYYTGKTNKIGEVHDGGAKMDWMVQEQERGITITSAATTCYwdpavkgaggavVMPGEHRMNIIDTPGHVDFTLEVER 150
                 69*********************************9999*******************************997658999******************** PP

                 HHHT-SEEEEEEETTTBSTHHHHHHHHHHHHTTTEEEEEEESCGSTHHHHHHHHHHHHHHHHHH................................... CS
    GTP_EFTU  90 glrvlDgavlvvdaveGvepqteevlrlalkegvpiivfiNKmDrlkaelkeiveevkqklsrk................................... 153
                 +lrvlDga+  +d v Gvepqte+v+r+a k++vp+++f+NKmDr++a++  +v+++k+ l +k                                   
  KOO21676.1 151 SLRVLDGAIACFDGVAGVEPQTETVWRQADKYKVPRMCFLNKMDRTGANFYYCVQTIKDLLGAKaavlhlpigkeddfrglvdlvqmkaiiwddsvpmg 249
                 *************************************************************999*********************************** PP

                 ...........................................HHHHHHHHHTTT.......................TTEEEEEEBTTTTBTHHHHHH CS
    GTP_EFTU 154 ...........................................eeklekygekge.......................kevpvvfgSalkgegvktlle 186
                                                            +                                  ++vpv++g a+k++gv+ ll+
  KOO21676.1 250 akfniveipdemaadgkqnlreqaieyrerlvemavemdddllM----------AflegeqpteaelkrcirkgciglQFVPVLCGTAFKNKGVQCLLD 338
                 ***********999998888888888876666666666544441..........0444445666667777777778889******************** PP

                 HHHHHSHH CS
    GTP_EFTU 187 alvellps 194
                 a++++lps
  KOO21676.1 339 AVIDYLPS 346
                 ******96 PP

>> EFG_IV  Elongation factor G, domain IV
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  134.1   0.3   6.6e-43     2e-39       1     120 [.     543     670 ..     543     671 .. 0.98

  Alignments for each domain:
  == domain 1  score: 134.1 bits;  conditional E-value: 6.6e-43
                 TCCESCEE.SS-CCHCCCCCCCHTSSSHCCCCCEEEECCTT.........TTSSEEEEE--STCCCHCCCCHHHHCCCCCCTTS-TTTS--EESEEEEE CS
      EFG_IV   1 pqVayrEtirkpvkereeklkkqsggdgqyakvileiePle.........egsgnefvdetkggqvpkeyieavekGfqealkeGplagepvtdvkvtL 90 
                 pqVayrE+i + v+ +e+++kkqsgg+gq+akv++++ePl          +++g++f+ ++kgg vpkeyi+ v kG+++ +  G+lag+pv+++k+tL
  KOO21676.1 543 PQVAYREAISRTVT-IEHTHKKQSGGSGQFAKVVVKFEPLIsedgekskgAKGGFVFEQAIKGGTVPKEYIPGVAKGLESIMGAGVLAGFPVIGCKATL 640
                 8*************.************************9888999999999*********************************************** PP

                 EEEE--TTTC-HHHHHHHHCHHHHHHHHCC CS
      EFG_IV  91 ldgslhevdsseaafkpaarralkeallkA 120
                 +dg++h+vdss +af++a+r a +++l++A
  KOO21676.1 641 MDGAYHDVDSSTMAFEIAGRAAARKGLREA 670
                 ***************************998 PP

>> EFG_II  Elongation Factor G, domain II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  110.1   0.0   1.3e-35     4e-32       1      74 [.     468     541 ..     468     542 .. 0.98

  Alignments for each domain:
  == domain 1  score: 110.1 bits;  conditional E-value: 1.3e-35
      EFG_II   1 fPePvislaiepkskadedklskaLarlleEDptlrverdeeTketilsGmGelHleivverlkreykvevelg 74 
                 fPePvi++++epksk+d+dk+++aL +l+ EDp++r++rde++++t+++GmGelHlei+++r+ re+kve+++g
  KOO21676.1 468 FPEPVIKVSVEPKSKGDQDKMASALVKLASEDPSFRFSRDEDSGQTVIEGMGELHLEIICDRMMREFKVECQIG 541
                 8*********************************************************************9987 PP

>> EFG_C  Elongation factor G C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   92.9   0.2     3e-30     9e-27       2      88 ..     674     759 ..     673     760 .. 0.97

  Alignments for each domain:
  == domain 1  score: 92.9 bits;  conditional E-value: 3e-30
                 EEEEEEEEEEEEECCCCCCHHHHHHHCT-EEEEEEEE.TTEEEEEEEEEGGG-TTHHHCHHHCTTTS-EEEEEEEEEEE--HHHHHH CS
       EFG_C   2 llEPivkveievpeeyvgkvisdlssrrGeiedmeqdasgrviieaeiPlaeligfateLrslTkGegsfsmefsgYeevpgdklde 88 
                 l+EP++kve+++peey+g+vi+d++srrG + +  ++ +++++++a +Pla+++++ ++Lrs TkG++s++m++++Ye vp ++ +e
  KOO21676.1 674 LMEPVMKVEVTTPEEYIGDVIGDINSRRGMVAELGER-GNMKTVRAMVPLANMFQYVSSLRSSTKGRASYQMSLDSYEIVPPNVEKE 759
                 9************************************.*******************************************998765 PP

>> GTP_EFTU_D2  Elongation factor Tu domain 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.0       4.3   1.3e+04      25      57 ..      75     104 ..      73     107 .. 0.79
   2 !   54.4   0.9   4.1e-18   1.2e-14       1      74 []     388     455 ..     388     455 .. 0.98

  Alignments for each domain:
  == domain 1  score: -3.3 bits;  conditional E-value: 4.3
                  CTTSEEEEEEEEEEEEETEEESEEETTSEEEEE CS
  GTP_EFTU_D2  25 dtskkeivtrissletfhededeavaganaGvi 57 
                  +t+k+    +i+ ++   +++d++v ++  G+ 
   KOO21676.1  75 YTGKT---NKIGEVHDGGAKMDWMVQEQERGIT 104
                  56677...8889999899999999999888776 PP

  == domain 2  score: 54.4 bits;  conditional E-value: 4.1e-18
                  EEEEEEEEEESEEETTEEEEEECTCTTSEEEEEEEEEEEEETEEESEEETTSEEEEEEEESSCCSGSSTTCEEE CS
  GTP_EFTU_D2   1 GtvalgrvysGtlkkGdevrilgndtskkeivtrissletfhededeavaganaGvivaikgledaiivGdtlt 74 
                  Gt+++ r+ysG+l+kGd v +  + ++kk   +ri++++ ++++ +++++ ++aG+iva++g +d+  +G+tl+
   KOO21676.1 388 GTLTFTRIYSGILQKGDAVLN--SVKGKK---ERIGRMLEMNANDRTDIEIGRAGDIVALVGCKDT-TTGETLC 455
                  89*******************..***9**...*********************************7.******8 PP

>> RF3_C  Class II release factor RF3, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.4   0.0   6.8e-09     2e-05      14      92 ..     476     554 ..     468     577 .. 0.81

  Alignments for each domain:
  == domain 1  score: 24.4 bits;  conditional E-value: 6.8e-09
                 EEEESSGGGHHHHHHHHHHHHHCTSSEEEEET.TSS-EEEEESSTHHHHHHHHHHHHHH---EEEEE-S--EEEEEE-S CS
       RF3_C  14 rvrlkdplkrkqlrkgleqLaeEGavqvfkeeeageelilgaVGqLQfeVveeRlknEYgvevrleslpyslarwvese 92 
                 +v+ k    + ++  +l +La E     f+++e++ ++++  +G+L +e++ +R+ +E++ve+++   ++ +   ++++
  KOO21676.1 476 SVEPKSKGDQDKMASALVKLASEDPSFRFSRDEDSGQTVIEGMGELHLEIICDRMMREFKVECQIGAPQVAYREAISRT 554
                 46667777788999******************999*****************************998887776666443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (773 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       389  (0.0216967); expected 358.6 (0.02)
Passed bias filter:                      363  (0.0202465); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.57u 0.28s 00:00:00.85 Elapsed: 00:00:00.41
# Mc/sec: 5674.94
//
Query:       KOO21677.1  [L=228]
Description: hypothetical protein Ctob_006638 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
     0.0071   16.3   0.0      0.062   13.4   0.1    2.3  2  LRR_6     Leucine Rich repeat


Domain annotation for each model (and alignments):
>> LRR_6  Leucine Rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.4   0.1   3.4e-06     0.062       6      23 ..     102     119 ..     102     120 .. 0.89
   2 ?   -0.4   0.0     0.091   1.6e+03       5      14 ..     130     139 ..     128     143 .. 0.83

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 3.4e-06
       LRR_6   6 teLdLsgNdIgDeGaeaL 23 
                 ++LdLsgN +g eG+  L
  KOO21677.1 102 RALDLSGNPLGAEGGALL 119
                 68************9876 PP

  == domain 2  score: -0.4 bits;  conditional E-value: 0.091
       LRR_6   5 LteLdLsgNd 14 
                 +t Ld+++ +
  KOO21677.1 130 ITRLDVRHTG 139
                 699***9976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (228 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       286  (0.0159518); expected 358.6 (0.02)
Passed bias filter:                      244  (0.0136092); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.23s 00:00:00.61 Elapsed: 00:00:00.38
# Mc/sec: 1812.63
//
Query:       KOO21678.1  [L=224]
Description: methyltransferase wbscr22, partial [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.2e-12   48.3   0.0    2.1e-12   47.5   0.0    1.4  1  Methyltransf_11  Methyltransferase domain
    1.5e-12   48.0   0.0    2.8e-12   47.2   0.0    1.5  1  Methyltransf_25  Methyltransferase domain
    2.7e-06   28.0   0.0    4.9e-06   27.2   0.0    1.4  1  Methyltransf_12  Methyltransferase domain
      2e-05   24.5   0.0    2.9e-05   23.9   0.0    1.5  1  Methyltransf_31  Methyltransferase domain
      3e-05   23.9   0.0    3.6e-05   23.7   0.0    1.2  1  Methyltransf_23  Methyltransferase domain
     0.0026   17.1   0.0     0.0031   16.8   0.0    1.1  1  CMAS             Mycolic acid cyclopropane synthetase
  ------ inclusion threshold ------
      0.024   14.0   0.0      0.076   12.3   0.0    1.7  2  Ubie_methyltran  ubiE/COQ5 methyltransferase family
      0.066   13.2   0.0      0.093   12.7   0.0    1.3  1  Methyltransf_32  Methyltransferase domain
      0.069   12.7   0.0        0.1   12.1   0.0    1.3  1  MTS              Methyltransferase small domain
      0.083   12.6   0.0       0.11   12.2   0.0    1.2  1  PCMT             Protein-L-isoaspartate(D-aspartate) O-methyl


Domain annotation for each model (and alignments):
>> Methyltransf_11  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.5   0.0   1.2e-15   2.1e-12       1      82 [.      54     143 ..      54     160 .. 0.88

  Alignments for each domain:
  == domain 1  score: 47.5 bits;  conditional E-value: 1.2e-15
                      EEET-TTSHHHHHHHHTTSEEEEEES-HHHHHHHHHHCCHHT-EEEETTEECCC.TSS-TT-EEEEEEES-CCC-.......CCHHHHHH CS
  Methyltransf_11   1 LdvGcGtGrlaealakrgarvvgvDlskemlklakekaseeglkvefvvadaek.lpfednsfDlvvssevlhhv.......edpekalk 82 
                      Ld+GcGtG+ a++l+k+g++ +g+D+s +ml++a++ a+++gl+ ++++ d+ + + f+ ++fD ++s ++++++       +dp++ l+
       KOO21678.1  54 LDAGCGTGYSARPLEKAGHHWIGTDISINMLQAARQSARRPGLRPQVLCDDLGHgFAFRVGTFDGCISISAVQWLchaskagDDPQRRLR 143
                      8******************************************999*******967******************9765554445555554 PP

>> Methyltransf_25  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.2   0.0   1.6e-15   2.8e-12       2      77 ..      54     128 ..      53     150 .. 0.89

  Alignments for each domain:
  == domain 1  score: 47.2 bits;  conditional E-value: 1.6e-15
                      EEET-TTSHHHHHHHCTSTSSEEEEEESSHHHHHHHHHHHHHTTTTEEEEESBC.CGBSSSTTTEEEEEEESTGGGS CS
  Methyltransf_25   2 LdlGcGtGrltlalakrlgkakvtgvDiseemleaareraeeeglnvefvqgda.edlpfedgsfDlvvssgalhhl 77 
                      Ld+GcGtG  ++ l k++  ++++g+Dis +ml+aar+ a++ gl+ ++++ d+ + + f  g+fD ++s+ a+++l
       KOO21678.1  54 LDAGCGTGYSARPLEKAG--HHWIGTDISINMLQAARQSARRPGLRPQVLCDDLgHGFAFRVGTFDGCISISAVQWL 128
                      9****************5..**********************************666*************8777763 PP

>> Methyltransf_12  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.2   0.0   2.7e-09   4.9e-06       1      89 [.      54     145 ..      54     158 .. 0.72

  Alignments for each domain:
  == domain 1  score: 27.2 bits;  conditional E-value: 2.7e-09
  Methyltransf_12   1 LeiGcGtGsllralleklpdieytgvDispsaiedakeklakrennnnnnvelealdlldldgg..ssfDlvvasnvlhhl.......kdirev 85 
                      L+ GcGtG  +r+l+++  + + +g+Dis +++++a++  ++ +     + ++  +dl+  +    ++fD  ++++++++l       +d+++ 
       KOO21678.1  54 LDAGCGTGYSARPLEKA--GHHWIGTDISINMLQAARQSARRPGL----RPQVLCDDLGHGFAFrvGTFDGCISISAVQWLchaskagDDPQRR 141
                      89***************..**************544444444443....455555555544444668999999888888887778888666655 PP

  Methyltransf_12  86 ldni 89 
                      l+++
       KOO21678.1 142 LRRF 145
                      5544 PP

>> Methyltransf_31  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.9   0.0   1.6e-08   2.9e-05       7      54 ..      53      97 ..      51     201 .. 0.85

  Alignments for each domain:
  == domain 1  score: 23.9 bits;  conditional E-value: 1.6e-08
  Methyltransf_31  7 vlDlGCGtGeltfelaeelgpkaevvGiDiseeaielArenaqklgld 54
                     +lD+GCGtG+ +  l  ++g   + +G Dis ++++ Ar+ a++ gl 
       KOO21678.1 53 LLDAGCGTGYSARPLE-KAG--HHWIGTDISINMLQAARQSARRPGLR 97
                     69*************9.665..59******************998885 PP

>> Methyltransf_23  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.7   0.0     2e-08   3.6e-05      20     105 ..      47     174 ..      23     215 .. 0.69

  Alignments for each domain:
  == domain 1  score: 23.7 bits;  conditional E-value: 2e-08
  Methyltransf_23  20 lraggrvLdiGcGtGillevlrengfsvtgvDlspeaveiae................................kakkaqkdqfdeqeaaepqg 81 
                         ++ +Ld GcGtG+ ++ l++ g++ +g D+s ++ + a+                                +++  q  ++ +   ++pq+
       KOO21678.1  47 TGVPALLLDAGCGTGYSARPLEKAGHHWIGTDISINMLQAARqsarrpglrpqvlcddlghgfafrvgtfdgciSISAVQWLCHASKAGDDPQR 140
                      5667789****************************99999888888888888777777777777777777777755555555554444455555 PP

  Methyltransf_23  82 ..........kfdlIvlrevlehvpdppellrqi 105
                                   ++ +r vl   p  pe l++i
       KOO21678.1 141 rlrrffvglkAVLVAGARTVLQLYPEQPEHLQMI 174
                      5555555554444445555555555555555555 PP

>> CMAS  Mycolic acid cyclopropane synthetase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   0.0   1.7e-06    0.0031      39     162 ..      24     159 ..      11     182 .. 0.76

  Alignments for each domain:
  == domain 1  score: 16.8 bits;  conditional E-value: 1.7e-06
                 TT--HHHHHHHHHHHHHTTTT--TT..-EEEEES-TTSHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHTS-SSS-EEEEES-GG.G---.--SEEEE CS
        CMAS  39 ddmtLeeAqlaKldlileklelkpG..mtlLdiGcGWGslvrraverydvkvvglTlSkeqaklakkrvdeldlerkvevklldye.dlde.kvdrvvs 133
                 +++ ++  q++  +++l+ l+l  G    lLd GcG G+ +r   e+ + + +g  +S +  + a+++  + +l+ +v  + l++   ++   +d  +s
  KOO21678.1  24 QNARMATTQRHLAERALQLLDLPTGvpALLLDAGCGTGYSARP-LEKAGHHWIGTDISINMLQAARQSARRPGLRPQVLCDDLGHGfAFRVgTFDGCIS 121
                 566788999999*************44479********98765.5666**********************99998888776655431343358888888 PP

                 ES-GGGT.........SGGGHHHHHHHHHHHS-TT-EE CS
        CMAS 134 vgafehv.........gkenydtffkklkkllkedGll 162
                 + a++ +          ++++ +ff  lk +l ++ + 
  KOO21678.1 122 ISAVQWLchaskagddPQRRLRRFFVGLKAVLVAGART 159
                 88887775556665544566666776666666666555 PP

>> Ubie_methyltran  ubiE/COQ5 methyltransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   4.3e-05     0.076      17     118 ..      19     117 ..       6     135 .. 0.74
   2 ?   -1.2   0.0      0.58     1e+03     196     214 ..     162     180 ..     158     184 .. 0.86

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 4.3e-05
                      HHHHHHHHHHHHTTTHHHHHH.HHHHH--S--TTEEEEES-TT-HHHHHHHHHHHHHHEEEEEES-HHHHHHHHHHHHHHTSSTEEEEE--TTT CS
  Ubie_methyltran  17 askyDlmndvlslgihrlWkk.fveklvavkrgakvlDvagGtgDlafklsdsvgekgkvvvlDinenmLkvgekklkeegkinieflqanaee 109
                      as+yD+   + + + h   ++  + +l +   +a +lD  +Gtg  a  l ++ g+  + ++ Di+ nmL+ +++ +++ g     +    +  
       KOO21678.1  19 ASRYDQNARMATTQRHLAERAlQLLDLPT-GVPALLLDAGCGTGYSARPLEKA-GH--HWIGTDISINMLQAARQSARRPGLRPQVLCDDLGHG 108
                      67888876666677776666644444444.456789********888777654.33..5799****************9998744455555666 PP

                      -TTS-T-EE CS
  Ubie_methyltran 110 LpfeddsfD 118
                      + f  ++fD
       KOO21678.1 109 FAFRVGTFD 117
                      666666666 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 0.58
                      HHS--HHHHHHHHHHTTEE CS
  Ubie_methyltran 196 rafPdqetlkeliedaGfk 214
                      + +P+q +  ++i+da + 
       KOO21678.1 162 QLYPEQPEHLQMIRDAALA 180
                      579************9875 PP

>> Methyltransf_32  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   5.2e-05     0.093      27      75 ..      51      95 ..      23     105 .. 0.88

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 5.2e-05
  Methyltransf_32 27 ltvvDvGaGkgYLsfvlalkekeyklkvvgidakeelvekaekraeklg 75
                       ++D+G+G gY ++ l+      +++ +g d++ ++ ++a++ a++ g
       KOO21678.1 51 ALLLDAGCGTGYSARPLEK----AGHHWIGTDISINMLQAARQSARRPG 95
                     5689**************9....69*****************9998855 PP

>> MTS  Methyltransferase small domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   5.8e-05       0.1      34      89 ..      52     105 ..      35     119 .. 0.85

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 5.8e-05
                 EEEEET-TTSHHHHHHHHHTTC.EEEEEESBHHHHHHHHHHHHHTTGCEEEEE-ST CS
         MTS  34 kvlDlGcGaGvlgaalakespeaevtlvdvdarAlesakenleanklevevvasdv 89 
                  +lD GcG+G+ +  l k+  +     +d++ + l++a++ +++ +l+ +v+  d+
  KOO21678.1  52 LLLDAGCGTGYSARPLEKAGHH--WIGTDISINMLQAARQSARRPGLRPQVLCDDL 105
                 579********99999998777..889*****************999988888876 PP

>> PCMT  Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   6.1e-05      0.11      55      94 ..      29      70 ..       9     110 .. 0.72

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 6.1e-05
                EE--HHHHHHHHHHTT--TT-EE..EEES-TTSHHHHHHHHH CS
        PCMT 55 tiSaphmvalalellelkkgarv..LevGsGsGyltavlarl 94
                   + h+  +al+ll+l  g  +  L+ G+G+Gy +  l + 
  KOO21678.1 29 ATTQRHLAERALQLLDLPTGVPAllLDAGCGTGYSARPLEKA 70
                456889999********999754228********99766654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (224 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       297  (0.0165653); expected 358.6 (0.02)
Passed bias filter:                      271  (0.0151152); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.39u 0.22s 00:00:00.61 Elapsed: 00:00:00.37
# Mc/sec: 1837.34
//
Query:       KOO21679.1  [L=174]
Description: calmodulin [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.2e-15   55.8   3.5    2.2e-08   33.1   0.3    2.8  3  EF-hand_1     EF hand
    3.7e-15   55.5   1.4      1e-12   47.7   0.4    2.9  3  EF-hand_8     EF-hand domain pair
    2.9e-14   53.3   0.4    2.5e-13   50.2   0.9    2.0  2  EF-hand_7     EF-hand domain pair
    2.9e-14   51.7   0.6    2.5e-06   27.0   0.0    4.1  5  EF-hand_6     EF-hand domain
    1.4e-09   37.0   0.4    0.00051   19.4   0.1    2.7  2  EF-hand_5     EF hand
    7.1e-05   23.1   0.0    0.00015   22.0   0.0    1.5  2  EF-hand_9     EF-hand domain
     0.0056   16.6   0.1      0.011   15.7   0.1    1.6  1  EF-hand_4     Cytoskeletal-regulatory complex EF hand
  ------ inclusion threshold ------
      0.074   13.0   0.0       0.69    9.9   0.0    2.1  2  UBA_6         UBA-like domain
      0.078   13.3   0.0       0.13   12.6   0.0    1.3  1  SPARC_Ca_bdg  Secreted protein acidic and rich in cysteine Ca
       0.09   12.8   0.0        2.7    8.1   0.0    2.7  2  UPF0154       Uncharacterised protein family (UPF0154)


Domain annotation for each model (and alignments):
>> EF-hand_1  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.1       4.1   7.4e+03       1       7 [.      43      49 ..      42      50 .. 0.64
   2 !   22.9   0.0   2.2e-08   3.9e-05       1      28 [.      79     106 ..      79     107 .. 0.93
   3 !   33.1   0.3   1.2e-11   2.2e-08       1      27 [.     115     141 ..     115     142 .. 0.95

  Alignments for each domain:
  == domain 1  score: -3.0 bits;  conditional E-value: 4.1
                HHHHHHH CS
   EF-hand_1  1 elkeiFr 7 
                e+ ++F+
  KOO21679.1 43 EIADMFQ 49
                5667776 PP

  == domain 2  score: 22.9 bits;  conditional E-value: 2.2e-08
                 HHHHHHHHHTTTSSSEEEHHHHHHHHHH CS
   EF-hand_1   1 elkeiFrefDkDgdGkIdfeEfkellkk 28 
                 el+e+F++fDk + GkI+  E++++++ 
  KOO21679.1  79 ELREAFAVFDKEKEGKISAAELRQVISN 106
                 79**********************9875 PP

  == domain 3  score: 33.1 bits;  conditional E-value: 1.2e-11
                 HHHHHHHHHTTTSSSEEEHHHHHHHHH CS
   EF-hand_1   1 elkeiFrefDkDgdGkIdfeEfkellk 27 
                 e++++++e+D+Dg+G+Id+ Ef+++l+
  KOO21679.1 115 EIEDMMKEADRDGSGTIDYAEFVNVLM 141
                 799*********************997 PP

>> EF-hand_8  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.9   0.0     0.013        23      14      34 ..      31      50 ..      30      51 .. 0.86
   2 !    7.9   0.0    0.0015       2.6      24      47 ..      76      99 ..      64     100 .. 0.89
   3 !   47.7   0.4   5.6e-16     1e-12       3      52 ..      93     140 ..      91     142 .. 0.95

  Alignments for each domain:
  == domain 1  score: 4.9 bits;  conditional E-value: 0.013
   EF-hand_8 14 l.rilglkkglseeevdilfre 34
                + r++g++   +++e+ ++f +
  KOO21679.1 31 VlRSVGMN--PTNDEIADMFQK 50
                55899***..**********86 PP

  == domain 2  score: 7.9 bits;  conditional E-value: 0.0015
   EF-hand_8 24 seeevdilfrefDtdgdGkisfeE 47
                +++e+++ f  fD ++ Gkis  E
  KOO21679.1 76 NDKELREAFAVFDKEKEGKISAAE 99
                789*****************9777 PP

  == domain 3  score: 47.7 bits;  conditional E-value: 5.6e-16
   EF-hand_8   3 gkItreelrrilrilglkkglseeevdilfrefDtdgdGkisfeEFcvll 52 
                 gkI+ +elr  ++ lg k  + e+e++++++e+D+dg+G+i++ EF+++l
  KOO21679.1  93 GKISAAELRQVISNLGEK--VDEDEIEDMMKEADRDGSGTIDYAEFVNVL 140
                 9*********99999*99..**************************9976 PP

>> EF-hand_7  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.3   0.0      0.54   9.7e+02      27      52 ..      31      50 ..       6      57 .. 0.76
   2 !   50.2   0.9   1.4e-16   2.5e-13       2      69 ..      78     139 ..      77     141 .. 0.94

  Alignments for each domain:
  == domain 1  score: 0.3 bits;  conditional E-value: 0.54
   EF-hand_7 27 llrkifqgagegsklsdeelellfke 52
                +lr      + g +++ +e+ ++f++
  KOO21679.1 31 VLR------SVGMNPTNDEIADMFQK 50
                444......88888999999999986 PP

  == domain 2  score: 50.2 bits;  conditional E-value: 1.4e-16
   EF-hand_7   2 eklkeaFkelDtdgdgyldkeellrllrkifqgagegsklsdeelellfkefDtdkdGvisfdEFlkl 69 
                 ++l+eaF  +D+ + g+++ +el++++         g+k++++e+e+++ke D d++G+i++ EF++ 
  KOO21679.1  78 KELREAFAVFDKEKEGKISAAELRQVIS------NLGEKVDEDEIEDMMKEADRDGSGTIDYAEFVNV 139
                 689************************9......899999*************************975 PP

>> EF-hand_6  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   0.0      0.94   1.7e+03       3      29 ..      10      34 ..       8      36 .. 0.60
   2 ?   -1.6   0.0         2   3.6e+03      21      28 ..      43      50 ..      40      65 .. 0.57
   3 !   27.0   0.0   1.4e-09   2.5e-06       1      31 []      79     108 ..      79     108 .. 0.95
   4 ?    1.7   0.0      0.18   3.1e+02      16      27 ..     110     121 ..     109     123 .. 0.90
   5 !   19.1   0.1   4.6e-07   0.00083       2      27 ..     116     141 ..     115     145 .. 0.88

  Alignments for each domain:
  == domain 1  score: -0.6 bits;  conditional E-value: 0.94
   EF-hand_6  3 reaFklfDkdgdGkidaeElrkalrka 29
                 eaF ++  ++  ++d++ +  +lr +
  KOO21679.1 10 IEAFGIH-GNNAPTVDKHIFGIVLR-S 34
                5666666.33333777777888887.5 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 2
   EF-hand_6 21 Elrkalrk 28
                E+ ++++k
  KOO21679.1 43 EIADMFQK 50
                55555554 PP

  == domain 3  score: 27.0 bits;  conditional E-value: 1.4e-09
   EF-hand_6   1 elreaFklfDkdgdGkidaeElrkalrkalg 31 
                 elreaF  fDk++ Gki+a+Elr++++ +lg
  KOO21679.1  79 ELREAFAVFDKEKEGKISAAELRQVIS-NLG 108
                 79************************9.776 PP

  == domain 4  score: 1.7 bits;  conditional E-value: 0.18
   EF-hand_6  16 kidaeElrkalr 27 
                 k+d +E+ ++++
  KOO21679.1 110 KVDEDEIEDMMK 121
                 79********98 PP

  == domain 5  score: 19.1 bits;  conditional E-value: 4.6e-07
   EF-hand_6   2 lreaFklfDkdgdGkidaeElrkalr 27 
                 +++  k+ D+dg+G+id++E++++l 
  KOO21679.1 116 IEDMMKEADRDGSGTIDYAEFVNVLM 141
                 66777999***************985 PP

>> EF-hand_5  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.0   6.6e-06     0.012       1      24 [.      80     103 ..      80     104 .. 0.92
   2 !   19.4   0.1   2.8e-07   0.00051       1      24 [.     116     139 ..     116     141 .. 0.89

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 6.6e-06
                 HHHHHHHH-SS-SSCE-HHHHHHH CS
   EF-hand_5   1 lkdtFqaiDlNgDGkIskeELktl 24 
                 l+++F  +D+ + GkIs+ EL+++
  KOO21679.1  80 LREAFAVFDKEKEGKISAAELRQV 103
                 6788******************97 PP

  == domain 2  score: 19.4 bits;  conditional E-value: 2.8e-07
                 HHHHHHHH-SS-SSCE-HHHHHHH CS
   EF-hand_5   1 lkdtFqaiDlNgDGkIskeELktl 24 
                 ++d+ +++D +g+G+I+  E+ ++
  KOO21679.1 116 IEDMMKEADRDGSGTIDYAEFVNV 139
                 68999****************874 PP

>> EF-hand_9  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.0         8   1.4e+04      23      34 ..      31      42 ..      25      46 .. 0.69
   2 !   22.0   0.0   8.3e-08   0.00015       3      64 ..      83     142 ..      81     144 .. 0.95

  Alignments for each domain:
  == domain 1  score: -3.5 bits;  conditional E-value: 8
   EF-hand_9 23 yLravtaqdpee 34
                +Lr v+ + +++
  KOO21679.1 31 VLRSVGMNPTND 42
                488888855544 PP

  == domain 2  score: 22.0 bits;  conditional E-value: 8.3e-08
   EF-hand_9   3 vFevcDtqktGrVpvsrlidyLravtaqdpeeseLeelakelDPdgedasvdldtflrvmre 64 
                  F v+D +k G++  ++l ++    ++ +  e e+e+  ke+D dg  +++d   f  v+++
  KOO21679.1  83 AFAVFDKEKEGKISAAELRQVISNLGE-KVDEDEIEDMMKEADRDGS-GTIDYAEFVNVLMR 142
                 59***********************99.99999**************.*********99986 PP

>> EF-hand_4  Cytoskeletal-regulatory complex EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.1   6.1e-06     0.011       8      70 ..      79     142 ..      71     167 .. 0.81

  Alignments for each domain:
  == domain 1  score: 15.7 bits;  conditional E-value: 6.1e-06
   EF-hand_4   8 eikkyweifsglkpednkltgdkvapvlkn..skleedklekiwdladidedgkldfeefc.iamr 70 
                 e+++ + +f   k+++ k++  ++ +v+ n   k++ed++e + + ad d  g++d+ ef+ + mr
  KOO21679.1  79 ELREAFAVFD--KEKEGKISAAELRQVISNlgEKVDEDEIEDMMKEADRDGSGTIDYAEFVnVLMR 142
                 5555555554..56788999999999*99955699*************************845566 PP

>> UBA_6  UBA-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.2   0.0      0.42   7.5e+02      21      34 ..      31      44 ..      29      44 .. 0.89
   2 ?    9.9   0.0   0.00038      0.69      15      34 ..      97     116 ..      96     116 .. 0.90

  Alignments for each domain:
  == domain 1  score: 0.2 bits;  conditional E-value: 0.42
       UBA_6 21 vLekLGpeadedkv 34
                vL  +G +++ d++
  KOO21679.1 31 VLRSVGMNPTNDEI 44
                8999******9975 PP

  == domain 2  score: 9.9 bits;  conditional E-value: 0.00038
       UBA_6  15 eeqvqavLekLGpeadedkv 34 
                  +++++v+++LG  +ded++
  KOO21679.1  97 AAELRQVISNLGEKVDEDEI 116
                 6799**************86 PP

>> SPARC_Ca_bdg  Secreted protein acidic and rich in cysteine Ca binding region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0     7e-05      0.13      55     111 ..      79     137 ..      64     139 .. 0.86

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 7e-05
  SPARC_Ca_bdg  55 pvawkFsklDtnsdkvlsksELaplraplvkl..ehCikpflescDadkdkkislkEwc 111
                   +++  F  +D+++++ +s +EL+++ ++l +   e  i+ +++++D d  ++i+ +E++
    KOO21679.1  79 ELREAFAVFDKEKEGKISAAELRQVISNLGEKvdEDEIEDMMKEADRDGSGTIDYAEFV 137
                   56667999******************99965333899********************97 PP

>> UPF0154  Uncharacterised protein family (UPF0154)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.0   0.0      0.24   4.4e+02      39      56 ..      32      49 ..      19      52 .. 0.83
   2 ?    8.1   0.0    0.0015       2.7      26      57 ..      91     122 ..      59     125 .. 0.84

  Alignments for each domain:
  == domain 1  score: 1.0 bits;  conditional E-value: 0.24
     UPF0154 39 mkqmGrkPSekqikqvmr 56
                ++++G++P+   i  + +
  KOO21679.1 32 LRSVGMNPTNDEIADMFQ 49
                6899******99999876 PP

  == domain 2  score: 8.1 bits;  conditional E-value: 0.0015
     UPF0154  26 enPpinekmirammkqmGrkPSekqikqvmrs 57 
                 +   i++  +r+  +  G k  e  i+ +m++
  KOO21679.1  91 KEGKISAAELRQVISNLGEKVDEDEIEDMMKE 122
                 45579999**********************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (174 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       777  (0.0433376); expected 358.6 (0.02)
Passed bias filter:                      582  (0.0324614); expected 358.6 (0.02)
Passed Vit filter:                        60  (0.00334653); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.40u 0.22s 00:00:00.62 Elapsed: 00:00:00.37
# Mc/sec: 1421.07
//
Query:       KOO21680.1  [L=353]
Description: putative sugar phosphate phosphate translocator [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    5.6e-10   39.0  16.4    6.8e-10   38.8  16.4    1.1  1  TPT           Triose-phosphate Transporter family
     0.0011   18.2  16.3     0.0022   17.2  16.3    1.5  1  UAA           UAA transporter family
  ------ inclusion threshold ------
      0.064   13.1   0.0      0.064   13.1   0.0    3.5  4  Chordopox_L2  Chordopoxvirus L2 protein


Domain annotation for each model (and alignments):
>> TPT  Triose-phosphate Transporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.8  16.4   1.1e-13   6.8e-10      10     282 ..      29     314 ..      20     322 .. 0.78

  Alignments for each domain:
  == domain 1  score: 38.8 bits;  conditional E-value: 1.1e-13
         TPT  10 WYllnvvfnilnKkilnvf.......pyPltvsavqllvgsvlilvlwalglkk....rpkisseflkailplalvktlghvlavvslskvaVSfthtv 97 
                 + +ln++ n +n ++l          ++P++ ++ + + ++++++v w   + +      ++ ++ + +++ ++ + +++  + + s+++v+     + 
  KOO21680.1  29 YVILNLALNSFNAYLLGPKqaghlalEIPVFYTLCHQVTIVLFTSV-WLYFVPEmrfnGLELFKSNWFQLICVSTIYAASIATNNASFATVSLTVNTIF 126
                 4456666666666665322223333489999999998777777554.44433332222467788899999*****99999999**************** PP

         TPT  98 KasePiFtvilsrlllgeklsllvylsLlpivgGvalasvt..ElsFnligfisAlisnltfslrnifsKkllkklkd.ldalnlfaiitilslllllP 193
                 Ka+ P+ t+i+s ++ g+++s+ v+ ++ ++v G  l+       s  ++g++  ++s l+ s+r ++s  l++++k+ l+ + + ++ +++++ +l+P
  KOO21680.1 127 KAAIPFPTIIFSYFIEGKTYSIRVLACVGVLVFGTLLSMPYggSGSPGVVGYCLVIFSMLATSIRPVISSVLMHTSKNpLSGVAMTFFDAFIAIWVLTP 225
                 **********************************99877651156778***************************8889******************** PP

         TPT 194 vallvegvlktpsllkstkvslkevllllllsgvlfhlynqvaymvLervspvthsvantvKrvvvIvlsvlvfknpvsllnaiGtava 282
                 ++l+++ ++++  + + t     + ++l+    ++  +y   ++ v++ +s +t+ +   +K+ v +  +  +  ++ ++l  iG++++
  KOO21680.1 226 FSLIFDVWMHQGIVNTFTGDLAARNYALVGFGCFMAGFYGPATFYVIKLTSSLTYIIIGNTKQLVLLLGAAALVDKETRPLLWIGVTIG 314
                 ******95544433333323355666666666677778999**************9877777777777777777788888888888775 PP

>> UAA  UAA transporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2  16.3   3.7e-07    0.0022      63     292 ..      95     315 ..      57     325 .. 0.72

  Alignments for each domain:
  == domain 1  score: 17.2 bits;  conditional E-value: 3.7e-07
         UAA  63 ktYvilvalffitsvlnnealkydisvPvhiifrssklipvmilGililgkrYsllqylsvllltlGviiftllsakdkkedskeslnkfllGiallvl 161
                  + + ++++  ++ ++nn +++  +s++v +if+++   p++i + +i gk+Ys++  ++v +l+ G  +    s+     ++  s +  ++G++l+++
  KOO21680.1  95 FQLICVSTIYAASIATNNASFAT-VSLTVNTIFKAAIPFPTIIFSYFIEGKTYSIRVLACVGVLVFGTLL----SM-----PYGGSGSPGVVGYCLVIF 183
                 4556677788888899999***9.******************************9977776666666443....33.....4455667789******** PP

         UAA 162 allldavlglvqeklykkygkhsk..ealfyshlls....lplfl....llqgellsavkflsesedvallslpsklfylllnvltqyvcikgVlilis 250
                 ++l++++  ++   l++  ++  +   + f+  +++    +p+ l     +++ +++ ++  ++ +++a        ++ +   ++++ +    ++ i+
  KOO21680.1 184 SMLATSIRPVISSVLMHTSKNPLSgvAMTFFDAFIAiwvlTPFSLifdvWMHQGIVNTFTGDLAARNYA--------LVGFGCFMAGFYGP-ATFYVIK 273
                 ******999999999987776666546777776665222134444333344444444444444444444........45555566666664.5688999 PP

         UAA 251 efgaltvtlvltlRKfvslllSillFknpltlqhlvgtllVf 292
                  +++lt  ++ ++ ++v ll    l +++     ++g+ +  
  KOO21680.1 274 LTSSLTYIIIGNTKQLVLLLGAAALVDKETRPLLWIGVTIGG 315
                 999999999999999999998888888888888888887655 PP

>> Chordopox_L2  Chordopoxvirus L2 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.7   0.5     0.019   1.1e+02      43      62 ..      17      36 ..      14      45 .. 0.85
   2 ?   -2.5   0.1      0.78   4.7e+03      50      73 ..      98     121 ..      88     127 .. 0.53
   3 ?   13.1   0.0   1.1e-05     0.064      41      75 ..     227     261 ..     219     265 .. 0.85
   4 ?   -1.6   0.2      0.42   2.5e+03      53      72 ..     274     293 ..     268     299 .. 0.70

  Alignments for each domain:
  == domain 1  score: 2.7 bits;  conditional E-value: 0.019
  Chordopox_L2 43 lfDlLilvivviillfrlvv 62
                  + DlL+ ++++++++ +l +
    KOO21680.1 17 ISDLLLWLLIFAYVILNLAL 36
                  679***********999976 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 0.78
  Chordopox_L2  50 vivviillfrlvvRNykvllilll 73 
                   ++v  i   ++   N    +++l+
    KOO21680.1  98 ICVSTIYAASIATNNASFATVSLT 121
                   344444444555555555555555 PP

  == domain 3  score: 13.1 bits;  conditional E-value: 1.1e-05
  Chordopox_L2  41 rLlfDlLilvivviillfrlvvRNykvllilllvy 75 
                    L+fD+ +   +v+ ++ +l +RNy+++ ++++++
    KOO21680.1 227 SLIFDVWMHQGIVNTFTGDLAARNYALVGFGCFMA 261
                   59*************************98887766 PP

  == domain 4  score: -1.6 bits;  conditional E-value: 0.42
  Chordopox_L2  53 viillfrlvvRNykvllill 72 
                   + ++l  ++++N k l+ ll
    KOO21680.1 274 LTSSLTYIIIGNTKQLVLLL 293
                   45678889999998877765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (353 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       619  (0.0345251); expected 358.6 (0.02)
Passed bias filter:                      259  (0.0144459); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.43u 0.23s 00:00:00.66 Elapsed: 00:00:00.38
# Mc/sec: 2757.73
//
Query:       KOO21681.1  [L=102]
Description: hypothetical protein Ctob_006630 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (102 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       247  (0.0137766); expected 358.6 (0.02)
Passed bias filter:                      242  (0.0134977); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.24s 00:00:00.60 Elapsed: 00:00:00.40
# Mc/sec: 772.83
//
Query:       KOO21682.1  [L=276]
Description: hypothetical protein Ctob_006637 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.2e-06   29.3   0.0    2.3e-06   28.4   0.0    1.4  1  2OG-FeII_Oxy_3  2OG-Fe(II) oxygenase superfamily
  ------ inclusion threshold ------
      0.014   15.1   0.0       0.02   14.6   0.0    1.2  1  Endonuclease_5  Endonuclease V
       0.18   11.6   1.9         11    5.9   0.0    2.6  3  Asp_Arg_Hydrox  Aspartyl/Asparaginyl beta-hydroxylase


Domain annotation for each model (and alignments):
>> 2OG-FeII_Oxy_3  2OG-Fe(II) oxygenase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.4   0.0   3.8e-10   2.3e-06      12      92 ..     165     234 ..     152     238 .. 0.85

  Alignments for each domain:
  == domain 1  score: 28.4 bits;  conditional E-value: 3.8e-10
                     EEEE-SS----TT.-.EEEEEEEEE....ET-B--EEE..........---TT-EEEEE-..B-TEEE--B.-SS-EEEEE CS
  2OG-FeII_Oxy_3  12 ykpHvDnfekeegsgqrrltvllyLnekeseeGGelelyekdkeavkikpkkgrlvlFesdellpHevlpvtkggeRlslt 92 
                     +  H+D+     g     +t+ ++L++++++eGGe++  e d   ++++ +kg++++F s+++  H+v+pvt+g +R +l+
      KOO21682.1 165 FLTHYDA-----G---SLVTIDVMLSDSRDFEGGEFRTLECDGTMRRYPFEKGDALVFVSHKF--HCVTPVTAG-RRHVLV 234
                     5668884.....3...789999***988889************9999999**********988..******876.887765 PP

>> Endonuclease_5  Endonuclease V
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.6   0.0   3.4e-06      0.02      17      84 ..      15      81 ..       4      87 .. 0.80

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 3.4e-06
                    -SEEEEEEEEEEECTCEEEEEEEEEEETTTTEEEEEEEEEEE--S-SSTT-CHHHCHHHHHHHHCC-S CS
  Endonuclease_5 17 lklvaGvDvsfvkeekkeavaalvvldlpslevvekavavvklsfpYipgfLaFRElpvllkaleklk 84
                    ++ va++ ++++  ++ +++ ++v  ++   + +  + +++k+++  ipgfL+ RE+  + +++++lk
      KOO21682.1 15 VSAVAAAAAAITM-QQYAEFESMVAGSALAEQHLPLSAEAQKTNVVRIPGFLSAREVHEIHELYAELK 81
                    4566666666633.3445588888888888999999999*************************9998 PP

>> Asp_Arg_Hydrox  Aspartyl/Asparaginyl beta-hydroxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.7   0.0    0.0041        24      15      63 ..      84     132 ..      68     151 .. 0.64
   2 ?    5.9   0.0    0.0018        11     120     156 ..     203     239 ..     191     240 .. 0.91
   3 ?   -2.5   0.2      0.65   3.9e+03      90     102 ..     250     262 ..     247     264 .. 0.85

  Alignments for each domain:
  == domain 1  score: 4.7 bits;  conditional E-value: 0.0041
                     TT......S--B-TTGGGEESSEEEEEEEESS...-EE-HHHHT-HHHHHHH CS
  Asp_Arg_Hydrox  15 lkeeeelkefeeeseedkgdisWktfvLyayg...araeenckrcPktaell 63 
                     l ++++   + +++++ +++++W+t +L + g   + ++e ++r+ +ta+ +
      KOO21682.1  84 LGSAGR---TTSNQAAAYRQGKWETAYLSTDGlfaKCMPELRARLIETAARV 132
                     323333...3344444444556********9988766677777777776655 PP

  == domain 2  score: 5.9 bits;  conditional E-value: 0.0018
                     EE---TTEEEEE-TTS-EEEEE-SSS-EEEEEEEEET CS
  Asp_Arg_Hydrox 120 trtweeGevllfDdsfeHevwnetdeeRvvLlvdvwr 156
                     ++  e+G++l+f     H v   t+++R vL++++w+
      KOO21682.1 203 RYPFEKGDALVFVSHKFHCVTPVTAGRRHVLVMELWE 239
                     67889******************************95 PP

  == domain 3  score: -2.5 bits;  conditional E-value: 0.65
                     EEE-S..-TTSEE CS
  Asp_Arg_Hydrox  90 kpHrgptngrlrl 102
                     ++H+gp+ + +r+
      KOO21682.1 250 ERHTGPCSHTVRA 262
                     68******99996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (276 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       466  (0.0259914); expected 358.6 (0.02)
Passed bias filter:                      323  (0.0180155); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.42u 0.25s 00:00:00.67 Elapsed: 00:00:00.40
# Mc/sec: 2060.36
//
Query:       KOO21683.1  [L=477]
Description: hydroxymethylglutaryl- synthase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.2e-73  246.7   0.0    1.8e-73  246.1   0.0    1.3  1  HMG_CoA_synt_N  Hydroxymethylglutaryl-coenzyme A synthase N t
    6.9e-65  219.4   0.0    1.2e-64  218.6   0.0    1.3  1  HMG_CoA_synt_C  Hydroxymethylglutaryl-coenzyme A synthase C t


Domain annotation for each model (and alignments):
>> HMG_CoA_synt_N  Hydroxymethylglutaryl-coenzyme A synthase N terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  246.1   0.0     2e-77   1.8e-73       1     174 []      14     185 ..      14     185 .. 0.98

  Alignments for each domain:
  == domain 1  score: 246.1 bits;  conditional E-value: 2e-77
  HMG_CoA_synt_N   1 rpkdvgilaleiylpaqyvdqaelekfdgveagkytiglgqtrmgfvsdredinslsltvvqkllertkldydaigrlevgtetiidksksvksv 95 
                     rp++vgila+e y+p ++++q+ le  dg  +gkytiglgq  +g+ +dred+ s+ lt + +l+e++ ++ ++igrlevgtet+idksksvk++
      KOO21683.1  14 RPQNVGILAMEAYFPQNCLQQTALEEADGC-KGKYTIGLGQESLGYFDDREDVASILLTALARLMENYGIEPQQIGRLEVGTETLIDKSKSVKTT 107
                     79**************************98.6*************************************************************98 PP

  HMG_CoA_synt_N  96 lm.qlfeesgntdiegidtlnacyggtaalfnavnwiessawdgryalvvagdiaiydsgnarptggagavalligpdap 174
                     l+ +lf+   n+d+eg+ ++nacyggtaal+n+v w+essawdgrya+vv+gdia+y+ g arptgg gava+lig dap
      KOO21683.1 108 LLaHLFGP--NADVEGVTSTNACYGGTAALLNSVAWVESSAWDGRYAVVVCGDIAVYAPGPARPTGGGGAVAMLIGADAP 185
                     76379988..*********************************************************************8 PP

>> HMG_CoA_synt_C  Hydroxymethylglutaryl-coenzyme A synthase C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  218.6   0.0   1.4e-68   1.2e-64       8     279 ..     192     474 ..     187     475 .. 0.91

  Alignments for each domain:
  == domain 1  score: 218.6 bits;  conditional E-value: 1.4e-68
                     -EEEE----SEE---TT-S--EE-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH------GGG-SEEEE--SSHHHHHHHHHHHHHHHHHH.S-HH CS
  HMG_CoA_synt_C   8 rashmehayDFykPdlaseYPvvDGklslscYlkaldrcYksyskkvkkitkdadkeftlddfdyvifhsPfcklvqkslarllynDflanassd 102
                     r +h +++yDFykP+   eY  vDGkls+++Yl+a+drcY+ ++ k  + +  + +  tld f++  +hsP++klvqk++ar+l+ D  a++ +d
      KOO21683.1 192 RCTHAAEVYDFYKPKGDTEYATVDGKLSQEAYLTAVDRCYAGLQAKRAAAV--GGAPCTLDAFGFACMHSPYAKLVQKGFARMLLADVIAQPTRD 284
                     89********************************************76666..899************************************987 PP

                     HHHHH-GGGGGGTT--GGGGGT-HHHHHHHHHHHHHHHHHHTGGGGHHHHHH---GGGHHHHHHHHHHHHS-HHHHTT.-EEEEEEEETTTEEEE CS
  HMG_CoA_synt_C 103 keeevkekleekddlkldesltdkdlekallkiakelfkkkvkpsllvptevGnmYtaslyaalasllskvsadelag.kriglfsYGsGlaasl 196
                     +  +++++ ++  ++   +s+ d+d e +l k+++ ++++   p+  ++t+vGn Yta++y  l++l+s  +a+ +     ++ fsYGsG  a+ 
      KOO21683.1 285 E-WAADADAQKVAAVPPAHSVNDRDTETVLRKLSATRYDAMCLPAGGISTRVGNCYTAAVYMNLLALVSSRAAELVDKePDVLCFSYGSGAVATA 378
                     6.677888888899******************************************************8888887766468************** PP

                     EEEEE-S--STTSHHH.............HHTTTTHHHHHHTSEEE-HHHHHHHHHHHHHHTT--SB---S-GGGS-TT-EEEEEE-TTS-EEEE CS
  HMG_CoA_synt_C 197 fslrvkqdvsedsild.............iakvldlkkkLdsRkevtPeefeealelrekahlkknfkpqgsidsLaegtyyLeevDdkfRRsYa 278
                     f ++ ++ + ++  +              ia++ d+  +L+sR+e t  +f++a++lr +++ +++++p+g i +L++gtyyL  vD ++RRsY+
      KOO21683.1 379 FVIKARKPSGTNALSGasglppvpftierIAQTADVFARLASRTERTTADFAAAMDLRATRYGQASYSPTGPIAELFPGTYYLVSVDAEHRRSYS 473
                     ***998765543332222344555555569****************************************************************8 PP

                     E CS
  HMG_CoA_synt_C 279 v 279
                     +
      KOO21683.1 474 R 474
                     6 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (477 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       366  (0.0204139); expected 358.6 (0.02)
Passed bias filter:                      306  (0.0170673); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.51u 0.25s 00:00:00.76 Elapsed: 00:00:00.42
# Mc/sec: 3417.12
//
Query:       KOO21684.1  [L=134]
Description: hypothetical protein Ctob_006635 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
  ------ inclusion threshold ------
      0.076   13.4   0.5       0.11   12.8   0.5    1.4  1  GHMP_kinases_C  GHMP kinases C terminal


Domain annotation for each model (and alignments):
>> GHMP_kinases_C  GHMP kinases C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.5   6.3e-06      0.11      26      66 ..      21      59 ..       5      92 .. 0.80

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 6.3e-06
  GHMP_kinases_C 26 kavvgilppeleellealselGalgaklsGaGgGptvfalf 66
                     a  +++ +++ +++   +++Ga+ga+ls    Gp+v+a++
      KOO21684.1 21 AADEESSADNIAAAIYGGLQAGAHGAFLSSQ--GPSVVAVC 59
                    445667778899999999*************..******99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (134 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       308  (0.0171789); expected 358.6 (0.02)
Passed bias filter:                      274  (0.0152825); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.26s 00:00:00.62 Elapsed: 00:00:00.39
# Mc/sec: 1022.57
//
Query:       KOO21685.1  [L=222]
Description: hypothetical protein Ctob_006634 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (222 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       244  (0.0136092); expected 358.6 (0.02)
Passed bias filter:                      180  (0.0100396); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.40u 0.25s 00:00:00.65 Elapsed: 00:00:00.41
# Mc/sec: 1611.05
//
Query:       KOO21686.1  [L=257]
Description: hypothetical protein Ctob_001289 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (257 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       466  (0.0259914); expected 358.6 (0.02)
Passed bias filter:                      256  (0.0142785); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.42u 0.24s 00:00:00.65 Elapsed: 00:00:00.40
# Mc/sec: 1919.49
//
Query:       KOO21687.1  [L=231]
Description: hypothetical protein Ctob_001287 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
        2.2    9.0   6.5        6.6    7.5   0.0    2.8  3  DUF2203   Uncharacterized conserved protein (DUF2203)


Domain annotation for each model (and alignments):
>> DUF2203  Uncharacterized conserved protein (DUF2203)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.0   0.0     0.076   1.4e+03      35      71 ..      18      56 ..       3      88 .. 0.65
   2 ?    1.8   3.5     0.021   3.8e+02       8      64 ..     112     170 ..     110     175 .. 0.67
   3 ?    7.5   0.0   0.00037       6.6      22      75 ..     173     226 ..     159     230 .. 0.85

  Alignments for each domain:
  == domain 1  score: 0.0 bits;  conditional E-value: 0.076
     DUF2203 35 eleeakaeaekse..aaeleaeleeleaeieelveeiee 71
                el+e+ ++       a+e+e e ++ + e++e  ++i++
  KOO21687.1 18 ELREEPDHVFPPPrkAKEEEDEQATFDREAREGYKRIKA 56
                444444444433333555555555555666666655554 PP

  == domain 2  score: 1.8 bits;  conditional E-value: 0.021
     DUF2203   8 AnalLpllkelleelralrkeleeleeeleeakaeaekse..aaeleaeleeleaeiee 64 
                 A+ ++ +l e++++ ++ r +l e++ e e+a +ea++++  + + e el+  ++++++
  KOO21687.1 112 AEMIVIKLGEVVKKPQQIRIKLMERRIEEEKAAKEAREHDaaKHASEPELRDKQNRMNQ 170
                 67788899999999999999888876555555555555555555556666666666554 PP

  == domain 3  score: 7.5 bits;  conditional E-value: 0.00037
     DUF2203  22 lralrkeleeleeeleeakaeaekseaaeleaeleeleaeieelveeieelGve 75 
                 + ++r+++  l +e+e+   ++e ++++++ a+  +++ae++ +v+ ++elG+ 
  KOO21687.1 173 FEECRARWLPLLAEMEKGALSTELNDEERALARRVSYRAELKLVVTSLDELGCL 226
                 4478889999999***************************************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (231 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       979  (0.0546043); expected 358.6 (0.02)
Passed bias filter:                      454  (0.0253221); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.24s 00:00:00.69 Elapsed: 00:00:00.39
# Mc/sec: 1769.95
//
Query:       KOO21688.1  [L=1643]
Description: hypothetical protein Ctob_001286 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1643 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       447  (0.0249317); expected 358.6 (0.02)
Passed bias filter:                      300  (0.0167327); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.83u 0.23s 00:00:01.06 Elapsed: 00:00:00.41
# Mc/sec: 12162.69
//
Query:       KOO21689.1  [L=153]
Description: hypothetical protein Ctob_001288 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.5e-07   31.4   0.7    2.6e-07   30.7   0.7    1.4  1  Auto_anti-p27  Sjogren's syndrome/scleroderma autoantigen 1 (
  ------ inclusion threshold ------
        2.6    8.1   7.1        2.2    8.3   4.0    2.0  2  PRIMA1         Proline-rich membrane anchor 1


Domain annotation for each model (and alignments):
>> Auto_anti-p27  Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.7   0.7   2.9e-11   2.6e-07       1      20 [.      87     106 ..      87     108 .. 0.95

  Alignments for each domain:
  == domain 1  score: 30.7 bits;  conditional E-value: 2.9e-11
  Auto_anti-p27   1 kkmgelLlkGwtMLaetCpv 20 
                    kkmg+lLlkGw+ML+e+Cp+
     KOO21689.1  87 KKMGDLLLKGWRMLGENCPE 106
                    89****************95 PP

>> PRIMA1  Proline-rich membrane anchor 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.3   4.0   0.00025       2.2      25      45 ..      48      69 ..      30      87 .. 0.59
   2 ?    0.6   0.0     0.063   5.6e+02      33      41 ..     121     129 ..      99     146 .. 0.57

  Alignments for each domain:
  == domain 1  score: 8.3 bits;  conditional E-value: 0.00025
      PRIMA1 25 rypplppppppppppr.llslt 45
                ++ p p+p+ppppp   +l+++
  KOO21689.1 48 KTAPAPAPTPPPPPAVpILTPE 69
                5567777766655543134433 PP

  == domain 2  score: 0.6 bits;  conditional E-value: 0.063
      PRIMA1  33 ppppppprl 41 
                 +p ppp  l
  KOO21689.1 121 APSPPPLDL 129
                 233333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (153 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       441  (0.024597); expected 358.6 (0.02)
Passed bias filter:                      360  (0.0200792); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.36u 0.26s 00:00:00.62 Elapsed: 00:00:00.39
# Mc/sec: 1187.43
//
Query:       KOO21690.1  [L=1092]
Description: gelation factor [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    7.1e-58  193.8   2.4      1e-16   61.6   0.1    7.3  7  Filamin          Filamin/ABP280 repeat
    7.9e-16   58.1   0.8    0.00071   19.8   0.0    5.0  5  Invasin_D3       Invasin, domain 3
     0.0011   19.2   7.9        1.6    9.1   0.5    4.6  5  CarboxypepD_reg  Carboxypeptidase regulatory-like domain
     0.0091   16.0   1.1        6.1    6.9   0.0    4.7  5  Big_1            Bacterial Ig-like domain (group 1)
  ------ inclusion threshold ------
      0.047   13.8   0.6          2    8.5   0.1    3.1  3  DUF3244          Domain of unknown function (DUF3244)
      0.084   13.3   0.6         82    3.7   0.1    3.7  3  DUF5060          Domain of unknown function (DUF5060)
       0.16   12.3   0.4       0.52   10.6   0.0    2.1  2  SH3_3            Bacterial SH3 domain
       0.17   11.9   0.0        2.2    8.3   0.0    2.4  2  PapC_N           PapC N-terminal domain
       0.34   11.5   6.3         19    6.0   0.0    5.3  6  YtkA             YtkA-like
        1.4    9.0   7.2         13    5.8   0.1    4.4  5  Y_Y_Y            Y_Y_Y domain


Domain annotation for each model (and alignments):
>> Filamin  Filamin/ABP280 repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.6   0.1   5.8e-20     1e-16       3     102 ..      37     128 ..      35     129 .. 0.92
   2 !   11.0   0.0   0.00033      0.59       2      48 ..     137     181 ..     136     276 .. 0.84
   3 !   11.5   0.0   0.00022       0.4      72     102 ..     481     513 ..     393     514 .. 0.92
   4 !   30.3   0.0   3.2e-10   5.8e-07      61     102 ..     573     614 ..     536     615 .. 0.78
   5 !   22.5   0.0   8.8e-08   0.00016       3     102 ..     624     776 ..     622     777 .. 0.67
   6 !   17.7   0.0   2.6e-06    0.0047      18     102 ..     812     960 ..     798     961 .. 0.59
   7 !   31.8   0.0   1.1e-10   1.9e-07      30     101 ..     996    1060 ..     960    1062 .. 0.64

  Alignments for each domain:
  == domain 1  score: 61.6 bits;  conditional E-value: 5.8e-20
                 STTSEEEESGGGTEEETTS-EEEEEEESSSTSCCCSTTS..EEEEE..ESSTS.....EEEEEEEE-SSSEEEEEE--SSSCEEEEEEEETTCE-TTSS CS
     Filamin   3 dpskskvnGpGieasvagesltFtvytkdakgeksevggdelqvrivtgsphgaatkssvkievvdnedgtytvsYtpeepgtyrvsvkldgkhiggsP 101
                 + + s ++G+G+ ++  +++++F++ + d kg +++ ggd++ v +  ++ +       v ++v dn+dg+y v+Y+p+++g y++ ++l+g++ +gsP
  KOO21690.1  37 SIEHSMASGEGLYTAMSKHKASFEITAYDSKGVRRPYGGDKFAVCV--RGAS------YVYAKVADNNDGSYSVEYKPSTSGAYSIAITLAGRSMPGSP 127
                 567899****************************************..4443......34567************************************ PP

                 E CS
     Filamin 102 f 102
                 f
  KOO21690.1 128 F 128
                 9 PP

  == domain 2  score: 11.0 bits;  conditional E-value: 0.00033
                 CSTTSEEEESGGGTEEETTS-EEEEEEESSSTSCCCSTTS..EEEEE CS
     Filamin   2 vdpskskvnGpGieasvagesltFtvytkdakgeksevggdelqvri 48 
                 +d+sk+++nG+ +++ +a  s tFtv+  da  + ++  ++el+v +
  KOO21690.1 137 ADASKCTLNGDALKKIIARASSTFTVEFCDAFSQ-IT-NAEELDVYV 181
                 69*************9999************655.44.357777777 PP

  == domain 3  score: 11.5 bits;  conditional E-value: 0.00022
                 SEEEEEE--SSSCEEEEEEEETTC..E-TTSSE CS
     Filamin  72 gtytvsYtpeepgtyrvsvkldgk..higgsPf 102
                  t+tvsY + ++g+y + v l+++    +gsPf
  KOO21690.1 481 KTHTVSYSVGKAGQYLLYVGLRNQrmALPGSPF 513
                 599********************855789***9 PP

  == domain 4  score: 30.3 bits;  conditional E-value: 3.2e-10
                 EEEEEEEE-SSSEEEEEE--SSSCEEEEEEEETTCE-TTSSE CS
     Filamin  61 svkievvdnedgtytvsYtpeepgtyrvsvkldgkhiggsPf 102
                  +k+  vdn+dgty++++  e +gty +++++dg h+ gsP 
  KOO21690.1 573 MLKTSYVDNKDGTYNIQWIGEVSGTYAIHITIDGLHVTGSPT 614
                 566789***********************************5 PP

  == domain 5  score: 22.5 bits;  conditional E-value: 8.8e-08
                 STTSEEEESGGGTEEETTS-EEEEEEESSSTSCC.CSTTS..EEEEE................ESSTS............................... CS
     Filamin   3 dpskskvnGpGieasvagesltFtvytkdakgek.sevggdelqvriv..............tgsphgaatk........................... 59 
                 +++++ v+G G++a+vag ++ + v +kd   ++ ++++   +++ i                        k                           
  KOO21690.1 624 EVRMCEVSGGGLKAAVAGTPVIVNVRCKDRFSNPtLPGSSLSFGLAIAlpaaapekdekskkS--------Kekedkkskeentgadgekakkgdkste 714
                 5789************************87655505555577888887888877666443330........1233444444455555444444444333 PP

                 ..............EEEEEEEE-SSSEEEEEE--SSSCEEEEEEEETT......CE-TTSSE CS
     Filamin  60 .s............svkievvdnedgtytvsYtpeepgtyrvsvkldg......khiggsPf 102
                  s            s+  e   + +g y+++Y +e++g++++++ +d       ++ +gsPf
  KOO21690.1 715 sSnceksgeafhgeSMYFEGNWRAEGEYDIKYIAEKAGDFELHLWCDTdgdgkrEKLPGSPF 776
                 303333334444444444555555**********************77778888899***99 PP

  == domain 6  score: 17.7 bits;  conditional E-value: 2.6e-06
                 ETTS-EEEEEEESSSTSCCCSTTS...EEEEE..ESSTS............................................................ CS
     Filamin  18 vagesltFtvytkdakgeksevgg.delqvrivtgsphgaatk.................................................s...... 60 
                 +ag  l+  ++++d + +++   +  + + + vt+++++  ++                                                 +      
  KOO21690.1 812 TAGNRLELGIQLRDPYSNPCAAPErTRGGTHAVTEGKNEVDEEaassptrrgstspprrgssgrlksgelggkdkggasttegtsyeegvtaKlvcqpa 910
                 667777777888888777777655444444444333333333345555556666666666666666666665555555555554444444430344444 PP

                 .......EEEEEEEE-S.SSEEEEEE--SSSCEEEEEEEETTCE-TTSSE CS
     Filamin  61 .......svkievvdne.dgtytvsYtpeepgtyrvsvkldgkhiggsPf 102
                        s++ + +  +  gt+t  Y ++ +g+y+ +++l+g++i gsP 
  KOO21690.1 911 sgpyeelSLTDKLKPGDqIGTFTLGYELHVAGQYKAHLMLNGQEINGSPV 960
                 44454453222322222259*****************************6 PP

  == domain 7  score: 31.8 bits;  conditional E-value: 1.1e-10
                  SSSTSCCCSTTS..EEEEE..ESSTS.....EEEEEEEE-SSSEEEEEE--SSSCEEEEEEEETTCE-TTSS CS
     Filamin   30 kdakgeksevggdelqvrivtgsphgaatkssvkievvdnedgtytvsYtpeepgtyrvsvkldgkhiggsP 101 
                  +d+  +k+  gg ++q r    +p+         +  +d ++gty +++t+ ++g+yrv+v+ld+ +i+gsP
  KOO21690.1  996 EDKFSNKLDRGGANVQARA--LGPSVT-----NAATSTDYNNGTYGIKFTAGAVGEYRVEVRLDNVKIKGSP 1060
                  3333333333333334333..333333.....23458999******************************** PP

>> Invasin_D3  Invasin, domain 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.2   0.0   2.2e-05      0.04      19      84 ..      54     122 ..      42     133 .. 0.84
   2 !   19.8   0.0     4e-07   0.00071      28      93 ..     550     618 ..     542     621 .. 0.78
   3 ?   -1.6   0.0         2   3.6e+03      23      44 ..     645     667 ..     641     681 .. 0.85
   4 ?   -2.6   0.0       4.1   7.3e+03      32      54 ..     951     976 ..     950     985 .. 0.72
   5 !   17.7   0.1   1.8e-06    0.0032      23      93 ..     990    1064 ..     972    1067 .. 0.79

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 2.2e-05
  Invasin_D3  19 kststltvtlkDangnp..vsgltvtfsttsag.tlsavtdngdGtytatLtattagtatitptvnGva 84 
                 k ++  ++t+ D +g     +g++ ++  + a  +  +v dn+dG y+++ + +t+g+++i  t+ G +
  KOO21690.1  54 KHKASFEITAYDSKGVRrpYGGDKFAVCVRGASyVYAKVADNNDGSYSVEYKPSTSGAYSIAITLAGRS 122
                 66778899999999976669999999998855578899****************************944 PP

  == domain 2  score: 19.8 bits;  conditional E-value: 4e-07
  Invasin_D3  28 lkDangnp.vsg.ltvtfsttsag.tlsavtdngdGtytatLtattagtatitptvnG.vaiaatatvtl 93 
                   D  gn  + g +tv++ ++ +  ++s   dn+dGty  +  ++ +gt+ i  t++G  +++++ +++l
  KOO21690.1 550 TCDRMGNRcIEGgATVNVDAKTDMlKTS-YVDNKDGTYNIQWIGEVSGTYAIHITIDGlHVTGSPTELKL 618
                 5688899986664889999774555545.55***************************866666666665 PP

  == domain 3  score: -1.6 bits;  conditional E-value: 2
  Invasin_D3  23 tltvtlkDangnp.vsgltvtfs 44 
                  + v  kD + np + g + +f 
  KOO21690.1 645 IVNVRCKDRFSNPtLPGSSLSFG 667
                 578999*******9999998886 PP

  == domain 4  score: -2.6 bits;  conditional E-value: 4.1
  Invasin_D3  32 ngnpvsgltvtfstt...sagtlsav 54 
                 ng+ + g  v f+ +    +g ls++
  KOO21690.1 951 NGQEINGSPVRFTVKadkPSGRLSTL 976
                 78889999999997655566666654 PP

  == domain 5  score: 17.7 bits;  conditional E-value: 1.8e-06
  Invasin_D3   23 tltvtlkDangnp..vsgltvtfsttsag....tlsavtdngdGtytatLtattagtatitptvnGvaiaatatvtl 93  
                   l + ++D++ n    +g++v+  +   g       + td ++Gty  ++ta ++g++ +++ +++v i+ ++ v l
  KOO21690.1  990 ELLLIAEDKFSNKldRGGANVQARA--LGpsvtNAATSTDYNNGTYGIKFTAGAVGEYRVEVRLDNVKIKGSPHVIL 1064
                  5678899999999755567777774..4554333346779999***********************88888888765 PP

>> CarboxypepD_reg  Carboxypeptidase regulatory-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.4   0.1     0.054        96      32      59 ..      92     121 ..      77     134 .. 0.80
   2 ?   -1.8   0.0       2.2     4e+03      52      74 ..     387     409 ..     386     413 .. 0.87
   3 !    7.4   0.0    0.0029       5.3      16      60 ..     562     608 ..     556     621 .. 0.90
   4 ?   -3.1   0.0       5.5   9.8e+03       9      35 ..     787     813 ..     786     815 .. 0.80
   5 !    9.1   0.5   0.00089       1.6      16      61 ..    1007    1056 ..    1001    1078 .. 0.82

  Alignments for each domain:
  == domain 1  score: 3.4 bits;  conditional E-value: 0.054
  CarboxypepD_reg  32 tttdadGafrlrglpp..gtysvtvsapGy 59 
                      +  ++dG+++++  p   g ys+ ++ +G 
       KOO21690.1  92 VADNNDGSYSVEYKPStsGAYSIAITLAGR 121
                      55689******9888899*****9998885 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 2.2
  CarboxypepD_reg  52 vtvsapGyatatreevtltagqt 74 
                      vt+ ++G +t + ++v l+a + 
       KOO21690.1 387 VTAAKDGKETLALRHVKLDASRR 409
                      899**************999765 PP

  == domain 3  score: 7.4 bits;  conditional E-value: 0.0029
  CarboxypepD_reg  16 gatVtvtnadtgtvastttdadGafrlrglpp..gtysvtvsapGya 60 
                      gatV v ++ +  ++s + ++dG+++++ +    gty ++++ +G +
       KOO21690.1 562 GATVNVDAKTDMLKTSYVDNKDGTYNIQWIGEvsGTYAIHITIDGLH 608
                      89*****999999999999*********998889*******999865 PP

  == domain 4  score: -3.1 bits;  conditional E-value: 5.5
  CarboxypepD_reg   9 asgapiagatVtvtnadtgtvastttd 35 
                      asg  i ga +++   +++t  ++ t+
       KOO21690.1 787 ASGSRIIGADLVLDPPSGSTMGTALTA 813
                      68999999***9998888888888876 PP

  == domain 5  score: 9.1 bits;  conditional E-value: 0.00089
  CarboxypepD_reg   16 gatVtvtnadtg.tvastttd.adGafrlrglpp..gtysvtvsapGyat 61  
                       ga+V +++ + + t+a t td ++G++ +++ +   g+y+v+v+ ++ + 
       KOO21690.1 1007 GANVQARALGPSvTNAATSTDyNNGTYGIKFTAGavGEYRVEVRLDNVKI 1056
                       89999999766525677778789******9888799*******9988765 PP

>> Big_1  Bacterial Ig-like domain (group 1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.4   0.0      0.65   1.2e+03      39      62 ..      91     114 ..      82     116 .. 0.84
   2 ?    1.6   0.0      0.16   2.8e+02      23      62 ..     562     600 ..     549     602 .. 0.85
   3 ?   -2.4   0.0       2.8     5e+03       6      20 ..     643     657 ..     640     663 .. 0.88
   4 ?    0.6   0.0      0.32   5.7e+02      17      32 ..     951     966 ..     948     979 .. 0.86
   5 !    6.9   0.0    0.0034       6.1      14      63 ..     996    1048 ..     987    1049 .. 0.81

  Alignments for each domain:
  == domain 1  score: -0.4 bits;  conditional E-value: 0.65
       Big_1  39 sgtTdanGkatvtltstkagtvtv 62 
                 ++  +++G ++v+ + +++g +++
  KOO21690.1  91 KVADNNDGSYSVEYKPSTSGAYSI 114
                 567799************999987 PP

  == domain 2  score: 1.6 bits;  conditional E-value: 0.16
       Big_1  23 gatVtfsvsggalsassgtTdanGkatvtltstkagtvtv 62 
                 gatV++ +  + l  +s + +++G++ ++  + ++gt+ +
  KOO21690.1 562 GATVNVDAKTDML-KTSYVDNKDGTYNIQWIGEVSGTYAI 600
                 6777777776655.8899******************9987 PP

  == domain 3  score: -2.4 bits;  conditional E-value: 2.8
       Big_1   6 tntltatvkDangnp 20 
                  + ++++ kD++ np
  KOO21690.1 643 PVIVNVRCKDRFSNP 657
                 68899********99 PP

  == domain 4  score: 0.6 bits;  conditional E-value: 0.32
       Big_1  17 ngnpvagatVtfsvsg 32 
                 ng+ ++g +V f+v +
  KOO21690.1 951 NGQEINGSPVRFTVKA 966
                 8999*********987 PP

  == domain 5  score: 6.9 bits;  conditional E-value: 0.0034
       Big_1   14 kDangnpva..gatVtfsvsg.galsassgtTdanGkatvtltstkagtvtvt 63  
                   D++ n +   ga+V  ++ g ++++a+++t  +nG++ +++t    g++ v 
  KOO21690.1  996 EDKFSNKLDrgGANVQARALGpSVTNAATSTDYNNGTYGIKFTAGAVGEYRVE 1048
                  55555555333999999999988888***********************9997 PP

>> DUF3244  Domain of unknown function (DUF3244)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.0       0.9   1.6e+03      66      92 ..      95     121 ..      79     126 .. 0.63
   2 ?    8.5   0.1    0.0011         2      52      97 ..     570     612 ..     560     614 .. 0.81
   3 ?    1.1   0.0      0.23   4.2e+02      61      96 ..    1023    1058 ..    1014    1059 .. 0.78

  Alignments for each domain:
  == domain 1  score: -0.8 bits;  conditional E-value: 0.9
                 GGTTEEEEE-TTS-SEEEEEEEEESS- CS
     DUF3244  66 asgstisidlsgeesgeYkleltskgg 92 
                 +++ ++s++ +   sg Y++ +t  g 
  KOO21690.1  95 NNDGSYSVEYKPSTSGAYSIAITLAGR 121
                 334667777777788888888886665 PP

  == domain 2  score: 8.5 bits;  conditional E-value: 0.0011
                 TTT--EEEEEEE-GGGTTEEEEE-TTS-SEEEEEEEEESS-EEEEE CS
     DUF3244  52 eetgevvyestivnasgstisidlsgeesgeYkleltskggylyGe 97 
                 +   + + + ++v++++ t++i+  ge sg+Y + +t +g +++G+
  KOO21690.1 570 K---TDMLKTSYVDNKDGTYNIQWIGEVSGTYAIHITIDGLHVTGS 612
                 3...4456667777889***************************96 PP

  == domain 3  score: 1.1 bits;  conditional E-value: 0.23
                  EEE-GGGTTEEEEE-TTS-SEEEEEEEEESS-EEEE CS
     DUF3244   61 stivnasgstisidlsgeesgeYkleltskggylyG 96  
                   t ++ ++ t+ i+ +  + geY++e + ++  + G
  KOO21690.1 1023 ATSTDYNNGTYGIKFTAGAVGEYRVEVRLDNVKIKG 1058
                  55666667999999999999*****99988776666 PP

>> DUF5060  Domain of unknown function (DUF5060)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.3   0.0      0.25   4.5e+02      46      64 ..      95     113 ..      81     118 .. 0.82
   2 ?    3.7   0.1     0.046        82      36      63 ..     727     754 ..     720     758 .. 0.80
   3 ?    3.3   0.0      0.06   1.1e+02      48      68 ..    1030    1050 ..    1025    1052 .. 0.87

  Alignments for each domain:
  == domain 1  score: 1.3 bits;  conditional E-value: 0.25
                 -STTEEEEEE---S-EEEE CS
     DUF5060  46 dGdgayrvrFaPdeeGeWt 64 
                 + dg+y v + P+++G ++
  KOO21690.1  95 NNDGSYSVEYKPSTSGAYS 113
                 44699***********996 PP

  == domain 2  score: 3.7 bits;  conditional E-value: 0.046
                 TEEEEEE-EE-STTEEEEEE---S-EEE CS
     DUF5060  36 gksltvpGFYdGdgayrvrFaPdeeGeW 63 
                 g+s+  +G +  +g+y +++ ++++G++
  KOO21690.1 727 GESMYFEGNWRAEGEYDIKYIAEKAGDF 754
                 556666777777799**********987 PP

  == domain 3  score: 3.3 bits;  conditional E-value: 0.06
                  TTEEEEEE---S-EEEEEEEE CS
     DUF5060   48 dgayrvrFaPdeeGeWtYkts 68  
                  +g+y ++F++ + Ge++ +++
  KOO21690.1 1030 NGTYGIKFTAGAVGEYRVEVR 1050
                  589*************98775 PP

>> SH3_3  Bacterial SH3 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0   0.00029      0.52       3      30 ..     210     237 ..     208     242 .. 0.90
   2 ?   -3.4   0.0         7   1.2e+04      43      49 ..     381     387 ..     379     390 .. 0.78

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00029
       SH3_3   3 lnvRsgPstssevigtlpyGekVevlee 30 
                 l+vR++ +++s++ig + +G+ V v+e 
  KOO21690.1 210 LYVRETQDLESKRIGEVAPGTLVGVVET 237
                 89*********************99985 PP

  == domain 2  score: -3.4 bits;  conditional E-value: 7
       SH3_3  43 dgteGwv 49 
                 +g++Gwv
  KOO21690.1 381 QGEVGWV 387
                 7899**9 PP

>> PapC_N  PapC N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.3   0.0    0.0012       2.2      27      56 ..     940     969 ..     920     993 .. 0.85
   2 ?    0.1   0.0       0.4   7.2e+02      28      57 ..    1042    1073 ..    1035    1086 .. 0.74

  Alignments for each domain:
  == domain 1  score: 8.3 bits;  conditional E-value: 0.0012
                 -SEEEEEEEEETTEEEEEEEEEEEECCTCC CS
      PapC_N  27 lpGeYrvdvyvNgkeigrqevefkaekkkk 56 
                  +G+Y+  +++Ng+ei+ + v+f+ +++k 
  KOO21690.1 940 VAGQYKAHLMLNGQEINGSPVRFTVKADKP 969
                 68*********************9876554 PP

  == domain 2  score: 0.1 bits;  conditional E-value: 0.4
                  SEEEEEEEEETTEEEEEE..EEEEEECCTCCC CS
      PapC_N   28 pGeYrvdvyvNgkeigrq..evefkaekkkkk 57  
                   GeYrv+v + + +i+ +   + f+ +k++++
  KOO21690.1 1042 VGEYRVEVRLDNVKIKGSphVILFTGKKGDEG 1073
                  59**********99976542444777665554 PP

>> YtkA  YtkA-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.0       3.2   5.7e+03       8      31 ..       8      30 ..       3      51 .. 0.59
   2 ?    6.0   0.0      0.01        19      59      85 ..      90     116 ..      84     117 .. 0.86
   3 ?    0.1   0.1      0.69   1.2e+03      61      85 ..     579     602 ..     563     603 .. 0.76
   4 ?   -0.7   0.0       1.3   2.3e+03      65      84 ..     738     757 ..     704     758 .. 0.85
   5 ?   -0.5   0.0       1.1     2e+03      27      53 ..     947     973 ..     923     991 .. 0.82
   6 ?    2.3   0.0      0.15   2.6e+02      56      85 ..    1020    1049 ..    1006    1050 .. 0.80

  Alignments for each domain:
  == domain 1  score: -2.0 bits;  conditional E-value: 3.2
        YtkA  8 evelvspeepkagentivvtvtqg 31
                +v++v pe p+ + n+ +v  + +
  KOO21690.1  8 DVQFVLPE-PEPQVNEAEVLNDIE 30
                56666653.444444444444433 PP

  == domain 2  score: 6.0 bits;  conditional E-value: 0.01
        YtkA  59 velkesedGvYeaevnfsmeGtWqvql 85 
                 +++ + +dG Y++e++ s +G + + +
  KOO21690.1  90 AKVADNNDGSYSVEYKPSTSGAYSIAI 116
                 5677789****************9975 PP

  == domain 3  score: 0.1 bits;  conditional E-value: 0.69
        YtkA  61 lkesedGvYeaevnfsmeGtWqvql 85 
                 +   +dG Y ++ + + +Gt+ +++
  KOO21690.1 579 VD-NKDGTYNIQWIGEVSGTYAIHI 602
                 33.59********9999****9987 PP

  == domain 4  score: -0.7 bits;  conditional E-value: 1.3
        YtkA  65 edGvYeaevnfsmeGtWqvq 84 
                   G+Y ++++ +++G+ +++
  KOO21690.1 738 AEGEYDIKYIAEKAGDFELH 757
                 57999999999999999887 PP

  == domain 5  score: -0.5 bits;  conditional E-value: 1.1
        YtkA  27 tvtqggkpVedadvkvefwmpameGme 53 
                 + + +g+++++  v++++  ++++G  
  KOO21690.1 947 HLMLNGQEINGSPVRFTVKADKPSGRL 973
                 567799999999999999999888865 PP

  == domain 6  score: 2.3 bits;  conditional E-value: 0.15
        YtkA   56 ttkvelkesedGvYeaevnfsmeGtWqvql 85  
                  t  ++ ++ ++G Y ++ + +  G+++v++
  KOO21690.1 1020 TNAATSTDYNNGTYGIKFTAGAVGEYRVEV 1049
                  5566677789******************97 PP

>> Y_Y_Y  Y_Y_Y domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.7   0.1      0.29   5.2e+02      23      44 ..      96     115 ..      88     119 .. 0.77
   2 ?   -2.0   0.0         2   3.5e+03      30      45 ..     484     499 ..     477     503 .. 0.84
   3 ?   -1.6   0.0       1.5   2.6e+03      24      43 ..     581     600 ..     564     604 .. 0.55
   4 ?    5.8   0.1    0.0075        13      16      51 ..     731     763 ..     729     770 .. 0.86
   5 ?    2.5   0.0      0.08   1.4e+02      25      50 ..    1026    1054 ..    1021    1065 .. 0.78

  Alignments for each domain:
  == domain 1  score: 0.7 bits;  conditional E-value: 0.29
                 EESSTS.EEEEES--SEEEEEE CS
       Y_Y_Y  23 easdysqeasytnlppGdYtlk 44 
                 ++++y  +++y++  +G Y + 
  KOO21690.1  96 NDGSY--SVEYKPSTSGAYSIA 115
                 23333..9***********985 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 2
                 EEEEES--SEEEEEEE CS
       Y_Y_Y  30 easytnlppGdYtlkV 45 
                 ++sy+  ++G+Y l+V
  KOO21690.1 484 TVSYSVGKAGQYLLYV 499
                 7999999*****9998 PP

  == domain 3  score: -1.6 bits;  conditional E-value: 1.5
                 ESSTS.EEEEES--SEEEEE CS
       Y_Y_Y  24 asdysqeasytnlppGdYtl 43 
                 ++d ++++ ++   +G+Y +
  KOO21690.1 581 NKDGTYNIQWIGEVSGTYAI 600
                 22222255555555555555 PP

  == domain 4  score: 5.8 bits;  conditional E-value: 0.0075
                 TTESSEEEESSTS.EEEEES--SEEEEEEEEEEETT CS
       Y_Y_Y  16 gidkeWveasdysqeasytnlppGdYtlkVkakdnd 51 
                 +++++W  +++y   ++y+  ++Gd++l++ +   d
  KOO21690.1 731 YFEGNWRAEGEY--DIKYIAEKAGDFELHLWCD-TD 763
                 799*********..8**************9984.34 PP

  == domain 5  score: 2.5 bits;  conditional E-value: 0.08
                  SSTS....EEEEES--SEEEEEEEEEEET CS
       Y_Y_Y   25 sdysq...easytnlppGdYtlkVkakdn 50  
                  +dy++    +++t    G+Y+++V+  + 
  KOO21690.1 1026 TDYNNgtyGIKFTAGAVGEYRVEVRLDNV 1054
                  4555555679**************98665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1092 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       868  (0.0484132); expected 358.6 (0.02)
Passed bias filter:                      511  (0.0285013); expected 358.6 (0.02)
Passed Vit filter:                        75  (0.00418317); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.85u 0.27s 00:00:01.12 Elapsed: 00:00:00.44
# Mc/sec: 7480.07
//
Query:       KOO21691.1  [L=842]
Description: hypothetical protein Ctob_001285 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.8e-12   45.8   0.6    2.7e-05   23.4   0.1    2.7  2  EF-hand_1       EF hand
    1.6e-10   40.7   2.1    2.3e-08   33.6   0.0    2.4  2  ART             NAD:arginine ADP-ribosyltransferase
    2.6e-09   37.4   1.2      1e-08   35.5   1.2    2.1  1  EF-hand_7       EF-hand domain pair
    1.2e-07   31.1   0.1      0.024   14.6   0.0    2.7  2  EF-hand_6       EF-hand domain
    2.2e-07   30.6   0.6      0.019   14.8   0.0    2.8  2  EF-hand_8       EF-hand domain pair
    2.2e-06   26.9   1.4     0.0015   17.9   0.1    2.7  2  EF-hand_5       EF hand
     0.0023   17.8   0.3      0.006   16.4   0.3    1.8  1  EF-hand_10      EF hand
     0.0053   16.1   0.0      0.012   14.9   0.0    1.6  1  ADPrib_exo_Tox  ADP-ribosyltransferase exoenzyme
  ------ inclusion threshold ------
      0.013   15.4   1.6        1.5    8.8   0.1    2.7  2  EF-hand_4       Cytoskeletal-regulatory complex EF hand
      0.036   12.8   2.4       0.14   10.8   2.0    2.1  2  Ndc1_Nup        Nucleoporin protein Ndc1-Nup
      0.076   13.3   0.3      0.076   13.3   0.3    2.4  2  SPARC_Ca_bdg    Secreted protein acidic and rich in cysteine 
       0.22   11.4   1.2       0.52   10.2   1.2    1.7  1  IQ              IQ calmodulin-binding motif


Domain annotation for each model (and alignments):
>> EF-hand_1  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.2   0.1   1.9e-07   0.00028       4      27 ..     564     587 ..     563     589 .. 0.92
   2 !   23.4   0.1   1.8e-08   2.7e-05       2      27 ..     598     623 ..     597     625 .. 0.92

  Alignments for each domain:
  == domain 1  score: 20.2 bits;  conditional E-value: 1.9e-07
                 HHHHHHTTTSSSEEEHHHHHHHHH CS
   EF-hand_1   4 eiFrefDkDgdGkIdfeEfkellk 27 
                 ++Fre+D D +G ++++Efk+l +
  KOO21691.1 564 KMFREIDADESGELSLKEFKRLAR 587
                 8*******************9976 PP

  == domain 2  score: 23.4 bits;  conditional E-value: 1.8e-08
                 HHHHHHHHTTTSSSEEEHHHHHHHHH CS
   EF-hand_1   2 lkeiFrefDkDgdGkIdfeEfkellk 27 
                 l++iFre D+D++G IdfeE+k+++ 
  KOO21691.1 598 LEQIFRESDRDKTGSIDFEEYKQICV 623
                 789*******************9985 PP

>> ART  NAD:arginine ADP-ribosyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.6   0.0   1.6e-11   2.3e-08      44     212 ..     357     542 ..     323     549 .. 0.74
   2 ?    2.6   3.9     0.045        68      13      55 ..     620     663 ..     612     682 .. 0.78

  Alignments for each domain:
  == domain 1  score: 33.6 bits;  conditional E-value: 1.6e-11
         ART  44 akkkwkerkakle.lpegfkdehgiAllaYtssselyrelneavrea.Gr.....sreeylsnfdfkalhfyLtraLqlLrkdsqrcsqvyRgvk.... 131
                  ++k +e+ ++l+ + + +  + +iA  +Yt+   l+ + n  +r a G+      r++    + + +    + +a+ +L+    ++ +vyRgv     
  KOO21691.1 357 FREKIEEINERLKpMNQYLTSDLFIAARLYTGP--LFVKYNGVLRAAtGQpffisCRDKLCLGNMYSTTLHTINNAITTLSG-LSPSCNVYRGVSggml 452
                 233444454444445677999**********99..**********874554444357788889999999999**********.667778******6555 PP

         ART 132 glrfsrakkgksvRfg...qFtssslkkkvae...efgqdtllsiktcl...gvpIkefskfpsedevLIppfevFkvtnlskeegkski 212
                  ++f    +++  R g    F+s+ ++++va    +  ++ ++++   l   g+++  fs++p+e e+  pp++  +v +++ e+  + +
  KOO21691.1 453 PEKFLAPDAQDNFRGGvelGFMSTTTNREVAYfyaRGSNGLVFEMFMGLvdkGADLSVFSQYPYEAEICFPPLTALEVRGIKVEGSTTVV 542
                 5788888889999*996666***********9554445677888877655559*************************998877766655 PP

  == domain 2  score: 2.6 bits;  conditional E-value: 0.045
         ART  13 kgclee.meaklpsllkeefaakqalaesweqakkkwkerkakl 55 
                 + c+ + me++ ++  ++e++a++ l+e++ q++++ ker +k+
  KOO21691.1 620 QICVSKiMEEEEKMKVRQEKSANKRLEEALAQEREREKERVEKV 663
                 457655388899999***********************995544 PP

>> EF-hand_7  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.5   1.2   6.8e-12     1e-08       7      70 ..     565     622 ..     560     623 .. 0.88

  Alignments for each domain:
  == domain 1  score: 35.5 bits;  conditional E-value: 6.8e-12
   EF-hand_7   7 aFkelDtdgdgyldkeellrllrkifqgagegsklsdeelellfkefDtdkdGvisfdEFlkly 70 
                 +F+e+D d +g l+  e++rl r++        +  d+ le++f+e D dk G+i+f+E+++++
  KOO21691.1 565 MFREIDADESGELSLKEFKRLARQL------IPDAADKTLEQIFRESDRDKTGSIDFEEYKQIC 622
                 7**********************74......333367789*********************987 PP

>> EF-hand_6  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.6   0.0   3.2e-05     0.047       4      27 ..     564     587 ..     562     594 .. 0.90
   2 !   14.6   0.0   1.6e-05     0.024       2      26 ..     598     622 ..     597     625 .. 0.91

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 3.2e-05
   EF-hand_6   4 eaFklfDkdgdGkidaeElrkalr 27 
                 + F+++D d +G+++ +E++++ r
  KOO21691.1 564 KMFREIDADESGELSLKEFKRLAR 587
                 68******************9877 PP

  == domain 2  score: 14.6 bits;  conditional E-value: 1.6e-05
   EF-hand_6   2 lreaFklfDkdgdGkidaeElrkal 26 
                 l+++F++ D+d++G+id+eE ++++
  KOO21691.1 598 LEQIFRESDRDKTGSIDFEEYKQIC 622
                 789*****************99875 PP

>> EF-hand_8  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.0   1.3e-05     0.019      31      52 ..     565     586 ..     550     589 .. 0.91
   2 !   13.1   0.1   4.2e-05     0.063      28      49 ..     598     619 ..     592     622 .. 0.87

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 1.3e-05
   EF-hand_8  31 lfrefDtdgdGkisfeEFcvll 52 
                 +fre+D d++G +s++EF  l+
  KOO21691.1 565 MFREIDADESGELSLKEFKRLA 586
                 9*****************9876 PP

  == domain 2  score: 13.1 bits;  conditional E-value: 4.2e-05
   EF-hand_8  28 vdilfrefDtdgdGkisfeEFc 49 
                 ++ +fre D+d+ G i+feE+ 
  KOO21691.1 598 LEQIFRESDRDKTGSIDFEEYK 619
                 6679****************96 PP

>> EF-hand_5  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.9   0.1     1e-06    0.0015       3      24 ..     564     585 ..     563     586 .. 0.93
   2 !    7.4   0.1    0.0022       3.3       2      23 ..     599     620 ..     598     623 .. 0.87

  Alignments for each domain:
  == domain 1  score: 17.9 bits;  conditional E-value: 1e-06
                 HHHHHH-SS-SSCE-HHHHHHH CS
   EF-hand_5   3 dtFqaiDlNgDGkIskeELktl 24 
                 ++F++iD++ +G +s  E+k+l
  KOO21691.1 564 KMFREIDADESGELSLKEFKRL 585
                 68******************98 PP

  == domain 2  score: 7.4 bits;  conditional E-value: 0.0022
                 HHHHHHH-SS-SSCE-HHHHHH CS
   EF-hand_5   2 kdtFqaiDlNgDGkIskeELkt 23 
                 ++ F++ D ++ G I++eE k+
  KOO21691.1 599 EQIFRESDRDKTGSIDFEEYKQ 620
                 6789999************998 PP

>> EF-hand_10  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   0.3     4e-06     0.006       2      47 ..     577     622 ..     564     624 .. 0.95

  Alignments for each domain:
  == domain 1  score: 16.4 bits;  conditional E-value: 4e-06
  EF-hand_10   2 msfkEvkrlLreiNievddeYAekLFkkcDkSksgrLegeEieeFy 47 
                 +s+kE krl r++  +  d+  e++F++ D+ k+g+++ eE ++ +
  KOO21691.1 577 LSLKEFKRLARQLIPDAADKTLEQIFRESDRDKTGSIDFEEYKQIC 622
                 79***************************************98765 PP

>> ADPrib_exo_Tox  ADP-ribosyltransferase exoenzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.0   8.2e-06     0.012      23     175 ..     382     536 ..     359     554 .. 0.69

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 8.2e-06
                     HHHHHCCTTHHHHHHHHHCTTTSGGGS-S.CHHHHH..........HHHHHHHCCT-.B-SS-EEEEEEE-GGGG-HHHHTT-HHHHHHHHHHHT CS
  ADPrib_exo_Tox  23 aireYtgsgysdINnyLrqnkgerndldk.selekk..........iknldsaleks.ripeniivYRrvdeaelgleldskneekvsefeakvk 105
                     a r Ytg    + N+ Lr   g+   ++  +    k           + +++a++    ++ +  vYR+v+   l        +  +++ ++++ 
      KOO21691.1 382 AARLYTGPLFVKYNGVLRAATGQPFFISCrD----KlclgnmysttLHTINNAITTLsGLSPSCNVYRGVSGGMLPE------KFLAPDAQDNFR 466
                     5566666666666666666665544332222....222223344447788888888878999999999998887733......555666666666 PP

                     T-EEEESS-EEEESSSS.SCCCTTT...SEEEEEEE-TTSBEEE-CCCSSSGCG-EEEE-TTEEEEEEEEEEE CS
  ADPrib_exo_Tox 106 gkvfkergyvSTslvkdtaasfggr...eilleltvpkgsegayisplslypgeaEvLlprgltykinkitlv 175
                     g    e g++ST+ ++++a  f  r      +e+     ++ga++s +s+yp eaE+ +p  + +++  i+ +
      KOO21691.1 467 G--GVELGFMSTTTNREVA-YFYARgsnGLVFEMFMGLVDKGADLSVFSQYPYEAEICFPPLTALEVRGIKVE 536
                     6..5689*********944.44344444566777777779********************9999999888874 PP

>> EF-hand_4  Cytoskeletal-regulatory complex EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.2   0.2     0.013        20      31      72 ..     546     590 ..     531     597 .. 0.74
   2 ?    8.8   0.1     0.001       1.5      42      66 ..     595     619 ..     590     633 .. 0.85

  Alignments for each domain:
  == domain 1  score: 5.2 bits;  conditional E-value: 0.013
   EF-hand_4  31 vapvlknskleedklekiwdladided..gkldfeefc.iamrli 72 
                 +   + ++k +ed l+ki  + +id d  g+l ++ef  +a +li
  KOO21691.1 546 ARVCMTQAKASEDDLDKIKMFREIDADesGELSLKEFKrLARQLI 590
                 55667889999******9999888766448999999962445555 PP

  == domain 2  score: 8.8 bits;  conditional E-value: 0.001
   EF-hand_4  42 edklekiwdladidedgkldfeefc 66 
                 ++ le+i+  +d d+ g++dfee+ 
  KOO21691.1 595 DKTLEQIFRESDRDKTGSIDFEEYK 619
                 678********************94 PP

>> Ndc1_Nup  Nucleoporin protein Ndc1-Nup
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.0      0.41   6.1e+02     428     491 ..     319     413 ..     274     438 .. 0.52
   2 ?   10.8   2.0   9.3e-05      0.14     318     436 ..     599     729 ..     589     811 .. 0.67

  Alignments for each domain:
  == domain 1  score: -1.2 bits;  conditional E-value: 0.41
    Ndc1_Nup 428 psptarls.......prarkllekaksrllskeqkealsestikkk..........vekelaqllksp............................lig 481
                 p ++++++       p++ kll+++ksr +    +++l+++t ++k          +                                         g
  KOO21691.1 319 P-TPQKMAhlglktwPQESKLLKDKKSRSQM---RQPLHPDTFREKieeinerlkpM----------NqyltsdlfiaarlytgplfvkyngvlraATG 403
                 2.23333346666667777777777777666...78899998888833322222221..........12333344444444444444444444444455 PP

    Ndc1_Nup 482 ylFrqslrrr 491
                  +F  s r +
  KOO21691.1 404 QPFFISCRDK 413
                 5555555555 PP

  == domain 2  score: 10.8 bits;  conditional E-value: 9.3e-05
    Ndc1_Nup 318 kaIFsdidrkg.gs.tWsqilkeClklikeltqrinergq.papkaaps...kapknkasapvkelprlsksplkkkddeifgnsltaeaspksssssk 410
                 ++IF ++dr++ gs  + +  ++C++ i e +++ + r++ +a     +   +a++++++ ++++  ++ k+ +k +++ ++     +e+ ++ +++  
  KOO21691.1 599 EQIFRESDRDKtGSiDFEEYKQICVSKIMEEEEKMKVRQEkSAN----KrleEALAQEREREKERVEKVLKKQEKRRREALL-----KEQRAAFDKEVD 688
                 6899999998756789************************2222....2244666666666666666666555555444444.....467777788999 PP

    Ndc1_Nup 411 egvekalsslakspgqs..psptarls..................p 436
                 ++v+++++++ ks  +                              
  KOO21691.1 689 SRVSARVGPMRKSMAELaaEM-----LmgnlsdrlmlpssrerrlM 729
                 999999999999876444322.....13333355555553333330 PP

>> SPARC_Ca_bdg  Secreted protein acidic and rich in cysteine Ca binding region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.3   5.1e-05     0.076      59     111 ..     565     619 ..     537     622 .. 0.88
   2 ?   -2.2   1.2       3.3   4.9e+03      21      41 ..     650     664 ..     628     695 .. 0.48

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 5.1e-05
  SPARC_Ca_bdg  59 kFsklDtnsdkvlsksELaplraplvk..lehCikpflescDadkdkkislkEwc 111
                   +F ++D ++ + ls +E + l  +l++   ++  ++ +++ D dk ++i+ +E+ 
    KOO21691.1 565 MFREIDADESGELSLKEFKRLARQLIPdaADKTLEQIFRESDRDKTGSIDFEEYK 619
                   9************************8644799*********************96 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 3.3
  SPARC_Ca_bdg  21 knlleelkereeekehleele 41 
                    + +e+ ker e+        
    KOO21691.1 650 AQEREREKERVEKV------L 664
                   22222222222222......1 PP

>> IQ  IQ calmodulin-binding motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   1.2   0.00035      0.52       2      18 ..      11      27 ..      10      28 .. 0.94

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.00035
                HHHHHHHHHHHHHHHHH CS
          IQ  2 kaaikIQaawRGylaRk 18
                +aa++ Q++ R+++aRk
  KOO21691.1 11 AAATCVQRFTRAMQARK 27
                69**************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (842 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2241  (0.124993); expected 358.6 (0.02)
Passed bias filter:                      808  (0.0450667); expected 358.6 (0.02)
Passed Vit filter:                        81  (0.00451782); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.86u 0.31s 00:00:01.17 Elapsed: 00:00:00.46
# Mc/sec: 5554.96
//
Query:       KOO21692.1  [L=263]
Description: calcium calmodulin-dependent protein kinase type 1-like protein, partial [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    4.1e-56  190.3   0.0    5.2e-56  189.9   0.0    1.0  1  Pkinase         Protein kinase domain
    3.8e-33  114.9   0.0    3.1e-32  111.9   0.0    1.9  1  Pkinase_Tyr     Protein tyrosine kinase
    1.1e-07   31.5   0.1    2.6e-07   30.2   0.1    1.6  1  Kdo             Lipopolysaccharide kinase (Kdo/WaaP) family
    1.4e-06   28.4   0.4    1.3e-05   25.2   0.1    1.9  2  APH             Phosphotransferase enzyme family
     0.0046   16.6   0.0      0.022   14.4   0.0    1.9  1  Choline_kinase  Choline/ethanolamine kinase
     0.0056   16.3   0.0      0.011   15.4   0.0    1.6  1  FTA2            Kinetochore Sim4 complex subunit FTA2
     0.0061   15.9   0.0      0.073   12.4   0.0    2.0  2  Kinase-like     Kinase-like
     0.0076   15.9   0.0      0.017   14.7   0.0    1.5  1  RIO1            RIO1 family
     0.0082   15.1   0.0     0.0096   14.9   0.0    1.1  1  Haspin_kinase   Haspin like kinase domain
     0.0086   14.9   0.0      0.014   14.2   0.0    1.3  1  Pkinase_fungal  Fungal protein kinase
  ------ inclusion threshold ------
      0.056   12.5   0.0      0.084   11.9   0.0    1.2  1  Seadorna_VP7    Seadornavirus VP7


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  189.9   0.0   3.2e-59   5.2e-56       5     202 ..      32     253 ..      29     261 .. 0.93

  Alignments for each domain:
  == domain 1  score: 189.9 bits;  conditional E-value: 3.2e-59
                 EEEEEESSEEEEEEEETTTT....EEEEEEEEECHCHCHHHHHHHHHHHHHHHHHS....CTTB--EEEEEEESSEEEEEEE--TTEBHHHHHHHHSS- CS
     Pkinase   5 eklGeGsfGkVykaveketg....kivAvKkikkekakkkkekkvlrEikilkklk....hpnivrlyevfeekdelylvleyveggeladllerkgsl 95 
                 ++lG+G+f++V  a+ +e g    + vAvK+++k +a  +k  ++++Ei+il++++    hpn+vr++e+f +++e ++vle+++gg+l dll+++g l
  KOO21692.1  32 HRLGRGQFAEVRLALAHEGGshgrNRVAVKVMAKVDAAREK--RIAKEIAILHRINrmqqHPNLVRMLEIFDTDTECFIVLELLSGGSLLDLLQKRGRL 128
                 68***********9987654222268*********999877..5********99988889*************************************** PP

                 -HHHHHHHHHHHHHHHHHHHHTTEE-SS-SGGGEEEETTTEEEE-SGTTSEESSSSCS..................BCTTTSCGGGS-HHHHTTSCBSH CS
     Pkinase  96 seeeakkiakqilegleylHskgiiHrDlKpeNiLidekgelKitDFGlakelesssk..................ltsfvgtseYlAPEvlkeneysk 176
                 +e+e++  ++qi++gl+ +H+ gi+HrDlKpeNiL+d +g+ K++DFG+ak ++++ +                  ++s +gt+ ++APEvlk+++y  
  KOO21692.1 129 PESECRTTVRQIASGLKAVHDLGIVHRDLKPENILFDADGVAKLVDFGFAKAFNTGPDspptggggstdglwthrfASSPCGTPGFVAPEVLKHTGYNC 227
                 *******************************************************9999**************************************** PP

                 HHHHHHHHHHHHHHHHSS-STTTSSH CS
     Pkinase 177 kvDvWslGvilyelltgkppfsgekg 202
                 +vD+WslGvi +  l+g+ pfs++ +
  KOO21692.1 228 AVDMWSLGVITFMSLYGQAPFSDTPS 253
                 *********************95544 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  111.9   0.0   1.9e-35   3.1e-32       4     210 ..      31     252 ..      29     260 .. 0.85

  Alignments for each domain:
  == domain 1  score: 111.9 bits;  conditional E-value: 1.9e-35
                  EEEEEEESSEEEEEEEEETTTTSSEEEEEEEEESTTSSHHHHHHHHHHHHHHHTS....-BTTB--EEEEEESSSSEEEEEE--TTEBHHHHHHHTCT CS
  Pkinase_Tyr   4 gkklGeGafGkVvegtlkgekekkevkVavKtlkeeateeekeelleeakimkkl....khpnivkllgvctkeepllivteyvkgGdLlkfLrkkek 97 
                  +++lG+G+f++V  + +++  ++ + +VavK++ +  ++ +++++ +e++i++++    +hpn+v++l +   + + +iv+e+++gG+Ll+ L+k+  
   KOO21692.1  31 QHRLGRGQFAEVRLALAHEGGSHGRNRVAVKVMAK-VDAAREKRIAKEIAILHRInrmqQHPNLVRMLEIFDTDTECFIVLELLSGGSLLDLLQKR-- 125
                  789****************99************54.5555589999**999976532367***********************************8.. PP

                  TTSBHHHHHHHHHHHHHHHHHHHHTTEEEST-SGGGEEEEETTEEEE-STTTHEETTTSSEE.EETTSSTSGGGGS..............-HHHHHHS CS
  Pkinase_Tyr  98 ekltlkdllsfalqvAkGmeyLeskklvHrdlaarNvLlsenkvvkisDfGLardiekddey.vkkeeaklpvkWm..............apEslkek 180
                   +l  ++    + q+A+G++ +++  +vHrdl   N+L + + v+k+ DfG a++ ++  +   + +++ +   W+              apE+lk++
   KOO21692.1 126 GRLPESECRTTVRQIASGLKAVHDLGIVHRDLKPENILFDADGVAKLVDFGFAKAFNTGPDSpPTGGGGSTDGLWThrfasspcgtpgfvAPEVLKHT 223
                  99******************************************************7766664444444444455444455555666666******** PP

                  EEEHHHHHHHHHHHHHHHHTTSSGTTTTSH CS
  Pkinase_Tyr 181 kftsksDvWsfGvllwEiftlgespypglk 210
                   ++ + D+Ws Gv+++ +  +g+ p+++  
   KOO21692.1 224 GYNCAVDMWSLGVITF-MSLYGQAPFSDTP 252
                  **************99.5556999998874 PP

>> Kdo  Lipopolysaccharide kinase (Kdo/WaaP) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.2   0.1   1.6e-10   2.6e-07      56     166 ..      72     175 ..      15     180 .. 0.81

  Alignments for each domain:
  == domain 1  score: 30.2 bits;  conditional E-value: 1.6e-10
         Kdo  56 travrEfrllkrLeeagvavpkpvaagavkvgleyrAlllterlegaqdLedllakwaelaeelkrallkavgrliaklhragvnHadlyaknillqqe 154
                  r+++E+++l+r ++ + + p+ v    +  +     +++ e l g  +L dll+k  +l+e+  r+++++++   +  h++g+ H+dl + nil++++
  KOO21692.1  72 KRIAKEIAILHRINRMQ-QHPNLVR-MLEIFDTDTECFIVLELLSGG-SLLDLLQKRGRLPESECRTTVRQIASGLKAVHDLGIVHRDLKPENILFDAD 167
                 56666666666666655.3344443.334456667889999999985.78889999788999************************************9 PP

         Kdo 155 eeeeaeiwliDl 166
                 +     + l+D+
  KOO21692.1 168 G----VAKLVDF 175
                 9....7777777 PP

>> APH  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.5   0.1    0.0088        14      21     108 ..      56     150 ..      48     151 .. 0.69
   2 !   25.2   0.1   8.3e-09   1.3e-05     139     197 ..     120     179 ..      72     182 .. 0.61

  Alignments for each domain:
  == domain 1  score: 5.5 bits;  conditional E-value: 0.0088
                 --EEEEEE-TT..S-HHHHHHHHHHHHHHHHTT-..B--B-CTTBS-EEETTEEEEEEE----EE-SS......HHHHHHHHHHHHHHHHHHCCHHCH CS
         APH  21 gryvlrrnppa..raaeeirrevallrlLakagv..pvPevlagdtddeeigllfalieyvpgrsllr......klsaaqlpellealgeflaalhqv 108
                  r+++++ ++     + +i++e a+l+ +++        ++l +   d+e      ++e + g sll+      +l +++ +  ++++++ l+a+h++
  KOO21692.1  56 NRVAVKVMAKVdaAREKRIAKEIAILHRINRMQQhpNLVRMLEIFDTDTECF---IVLELLSGGSLLDllqkrgRLPESECRTTVRQIASGLKAVHDL 150
                 4888888888855566677799999988885544333334444333555555...5555555555555566***999*******************87 PP

  == domain 2  score: 25.2 bits;  conditional E-value: 8.3e-09
                 CCTCCHHHHHHHH....HHHHHHHH--SSS-EEEE-SS-SGGGEEEC..TTEEEEE---TT-E CS
         APH 139 selldlleeleeq....vlaalaallpgelptvllHgDlhpgNllvdpddgrvtGviDfedag 197
                  +l++ + +l e       +++a  l +  + +++H+Dl+p N+l+d   + v  ++Df++a+
  KOO21692.1 120 DLLQK-RGRLPESecrtTVRQIASGLKAVHDLGIVHRDLKPENILFD--ADGVAKLVDFGFAK 179
                 33333.44444443334333333333335689***************..444456******96 PP

>> Choline_kinase  Choline/ethanolamine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.4   0.0   1.3e-05     0.022      69     176 ..      72     180 ..      66     186 .. 0.62

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 1.3e-05
                     HHHHHHHHHHTTCHH.TTSSSS-HHHHHHHHH.........HHCCS.TT..ECHHGGCCHCCCTHHHHHHHHHTHHHHHHCHGG-EEEE-S--SG CS
  Choline_kinase  69 kkiAkklaelHsleleseskespslwktmqkw.........llnkeaqtkakkekkkkqlklinledlekelekleklleelespvvfcHnDlqe 154
                     k+iAk++a lH+++     +++p+l ++++ +         l+  +     +  +k+ +l ++++ +  ++++   + l +  +++   H Dl +
      KOO21692.1  72 KRIAKEIAILHRINR---MQQHPNLVRMLEIFdtdtecfivLELLSGGSLLDLLQKRGRLPESECRTTVRQIA---SGL-KAVHDLGIVHRDLKP 159
                     789999999999999...5667777777777733333333322222222333333333333333333332222...222.333558899****** PP

                     GGEEE.-CTTEEEE--GTT-EE CS
  Choline_kinase 155 gNillnkeekklvlIDFEYagy 176
                     +Nil+ + ++   l+DF +a +
      KOO21692.1 160 ENILF-DADGVAKLVDFGFAKA 180
                     *****.99*********99975 PP

>> FTA2  Kinetochore Sim4 complex subunit FTA2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.0   6.8e-06     0.011     176     214 ..     135     178 ..      61     179 .. 0.90

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 6.8e-06
        FTA2 176 sqlpkllrdlkklhklgIvvrDlkeenyi...dg..kLvDlsaa 214
                   ++++ + lk +h lgIv+rDlk+en++   dg  kLvD++ a
  KOO21692.1 135 TTVRQIASGLKAVHDLGIVHRDLKPENILfdaDGvaKLVDFGFA 178
                 56899**********************98655334489999876 PP

>> Kinase-like  Kinase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.4   0.0   4.5e-05     0.073     158     189 ..     145     176 ..     109     188 .. 0.83
   2 ?    1.3   0.0      0.11   1.7e+02     224     250 ..     222     248 ..     202     257 .. 0.82

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 4.5e-05
  Kinase-like 158 anLqakglvhgkftvdnllldekgglmlggft 189
                     +++g+vh +++++n+l+d +g  +l +f+
   KOO21692.1 145 KAVHDLGIVHRDLKPENILFDADGVAKLVDFG 176
                  456899**********************9996 PP

  == domain 2  score: 1.3 bits;  conditional E-value: 0.11
  Kinase-like 224 ktkmthkldaWqlGlviyriwclklPl 250
                  +t +  ++d W lG+  ++    ++P+
   KOO21692.1 222 HTGYNCAVDMWSLGVITFMSLYGQAPF 248
                  56778899******9999876666666 PP

>> RIO1  RIO1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   0.0     1e-05     0.017      19     149 ..      33     175 ..      18     181 .. 0.62

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 1e-05
                 -S---SS-HHHHCTTTSTTSTCG--GS-HHHHHHHHHH......HHHHHHHHHHHTT--S--EEEE......ETTE.EEEE--EETTEEGGBHHHCG.- CS
        RIO1  19 ktstteFkkrkkyvsgekrfkdrksktnprklvklwae......kEfrnLkrleeagvpvPkpiel......krhv.lvmefigedgvaapklkdve.e 103
                 ++++ +F +++     e   ++ +++   + ++k+ a       kE+++L+r+++++ + P+ + +        ++ +v+e+++  g  + +l + + +
  KOO21692.1  33 RLGRGQFAEVRLALAHEGG-SHGRNRVAVKVMAKVDAArekriaKEIAILHRINRMQ-QHPNLVRMleifdtDTECfIVLELLS--GGSLLDLLQKRgR 127
                 5555555555555555544.4444555555555554431111115667777766663.44544443111111444438999999..6666665555545 PP

                 ..HHHHHHHHHHHHHHHHHHHHTSTEEESS-STTSEEEETT.EEEE--G CS
        RIO1 104 ..eeeaeelyeevleemrklykeaglvHaDLSeyNvlvded.kvviIDv 149
                   e+e ++ ++++ +   k++++ g+vH DL   N+l+d d    ++D+
  KOO21692.1 128 lpESECRTTVRQIASG-LKAVHDLGIVHRDLKPENILFDADgVAKLVDF 175
                 5788888888888885.56677******************955567887 PP

>> Haspin_kinase  Haspin like kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.0   5.9e-06    0.0096     156     256 ..      84     180 ..      14     186 .. 0.74

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 5.9e-06
  Haspin_kinase 156 vkgtypglllllqdkvlkekpdfyseqqlflvlllkdkGtdLeevklk...swkqalsifwqivkiLyvaEtkfeFEHRdLhldniLvdknlnvtl 248
                    ++   ++++ l++   +     f ++++ f+vl+l  +G+ L+ ++ +     +++     qi++ L+++   +   HRdL+ +niL d+ +   l
     KOO21692.1  84 INRM-QQHPNLVRMLEI-----FDTDTECFIVLELLSGGSLLDLLQKRgrlPESECRTTVRQIASGLKAV-HDLGIVHRDLKPENILFDADGVAKL 172
                    4433.344444333222.....4458999**********9888885541114589999999****99877.689********************** PP

  Haspin_kinase 249 idlklsRl 256
                    +d+  +++
     KOO21692.1 173 VDFGFAKA 180
                    ***98876 PP

>> Pkinase_fungal  Fungal protein kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.2   0.0   8.8e-06     0.014     313     389 ..     138     223 ..     130     234 .. 0.75

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 8.8e-06
  Pkinase_fungal 313 rDaIkghrsLflkagiLHrDiSenNilitdskkegerkglLiDLDlakelsddsses...............garertGTleFmaievlkge 389
                     r+   g++  + + gi+HrD   +Nil+      ++    L+D+ +ak  ++   +                 a    GT+ F+a evlk +
      KOO21692.1 138 RQIASGLKAVH-DLGIVHRDLKPENILFD-----ADGVAKLVDFGFAKAFNTGPDSPptggggstdglwthrFASSPCGTPGFVAPEVLKHT 223
                     55667888888.****************9.....789999*********9974444455555444433333322669************944 PP

>> Seadorna_VP7  Seadornavirus VP7
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   5.1e-05     0.084     147     186 ..     140     174 ..     132     178 .. 0.80

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 5.1e-05
  Seadorna_VP7 147 ivaglkdLmdfhsestnllhGDcnpenlmcDknGylklvD 186
                   i  glk    +h  + +++h D +pen++ D  G+ klvD
    KOO21692.1 140 IASGLK---AVH--DLGIVHRDLKPENILFDADGVAKLVD 174
                   555555...455..667**********************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (263 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       490  (0.02733); expected 358.6 (0.02)
Passed bias filter:                      456  (0.0254337); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.50u 0.28s 00:00:00.78 Elapsed: 00:00:00.44
# Mc/sec: 1806.94
//
Query:       KOO21693.1  [L=578]
Description: flagellar associated protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.7e-07   30.2   0.2    8.3e-07   28.6   0.2    1.9  1  SAP       SAP domain
  ------ inclusion threshold ------
       0.11   13.0   0.0         17    6.0   0.0    2.7  2  DUF4891   Domain of unknown function (DUF4891)


Domain annotation for each model (and alignments):
>> SAP  SAP domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.6   0.2   9.3e-11   8.3e-07       4      32 ..     171     199 ..     169     202 .. 0.95

  Alignments for each domain:
  == domain 1  score: 28.6 bits;  conditional E-value: 9.3e-11
                 --HHHHHHHHHHTT--TTS-HHHHHHHHH CS
         SAP   4 ltVaeLKeeLkkrGLptsGkKaeLieRLk 32 
                 ++ ae +e+L++r L+tsGkKa L eRL+
  KOO21693.1 171 MKLAEMREALASRDLDTSGKKATLAERLV 199
                 9***************************7 PP

>> DUF4891  Domain of unknown function (DUF4891)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.8   0.0    0.0092        82      36      50 ..     418     432 ..     406     443 .. 0.83
   2 ?    6.0   0.0    0.0019        17      61      86 ..     527     552 ..     522     556 .. 0.90

  Alignments for each domain:
  == domain 1  score: 3.8 bits;  conditional E-value: 0.0092
     DUF4891  36 eikedGkvkvlsyvk 50 
                 +i+edG+v+v++y+ 
  KOO21693.1 418 DIDEDGSVDVVEYMG 432
                 79***********85 PP

  == domain 2  score: 6.0 bits;  conditional E-value: 0.0019
     DUF4891  61 rkrlkkfrvkkellesgyvkpGeqyv 86 
                 r +l++f+v +el ++ ++++G +y 
  KOO21693.1 527 RAELDRFKVPQELKAGTFIQVGSEYF 552
                 6789******************9985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (578 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       613  (0.0341904); expected 358.6 (0.02)
Passed bias filter:                      427  (0.0238162); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.57u 0.26s 00:00:00.83 Elapsed: 00:00:00.43
# Mc/sec: 4023.62
//
Query:       KOO21694.1  [L=98]
Description: hypothetical protein Ctob_001281 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.5e-15   57.5   1.2    2.1e-15   57.1   1.2    1.1  1  CBFB_NFYA  CCAAT-binding transcription factor (CBF-B/NF-YA) s


Domain annotation for each model (and alignments):
>> CBFB_NFYA  CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.1   1.2   1.2e-19   2.1e-15       3      56 .]      30      85 ..      29      85 .. 0.87

  Alignments for each domain:
  == domain 1  score: 57.1 bits;  conditional E-value: 1.2e-19
   CBFB_NFYA  3 lyVNakQynrIlkRReaRaklea.elkl.rkarkkylheSRhkhAmrRpRgpgGRF 56
                +yVN+ Qy +I +RR a a+  a  + + +++  +y+heSRh  Am+R Rgp+GRF
  KOO21694.1 30 RYVNPAQYAAICQRRLACAAERAaVKDVaPRQITRYKHESRHVLAMKRVRGPNGRF 85
                6**************9988776633444577779*********************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (98 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       347  (0.0193541); expected 358.6 (0.02)
Passed bias filter:                      269  (0.0150036); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.22s 00:00:00.57 Elapsed: 00:00:00.38
# Mc/sec: 771.02
//
Query:       KOO21695.1  [L=596]
Description: hypothetical protein Ctob_001280 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.6e-42  145.7   0.0    2.2e-42  145.3   0.0    1.2  1  Pkinase      Protein kinase domain
    2.5e-18   66.3   0.0      4e-18   65.6   0.0    1.3  1  Pkinase_Tyr  Protein tyrosine kinase
    0.00077   19.5   0.0     0.0019   18.1   0.0    1.6  1  APH          Phosphotransferase enzyme family
  ------ inclusion threshold ------
      0.013   14.8   0.7      0.023   14.1   0.7    1.3  1  Kdo          Lipopolysaccharide kinase (Kdo/WaaP) family
      0.059   13.0   0.2        0.1   12.2   0.2    1.3  1  RIO1         RIO1 family


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  145.3   0.0   6.1e-46   2.2e-42       1     264 []     148     463 ..     148     463 .. 0.83

  Alignments for each domain:
  == domain 1  score: 145.3 bits;  conditional E-value: 6.1e-46
                 EEEEEEEEEESSEEEEEEEE.....TTTTEEEEEEEEECHCHCHHHHHHHHHHHHHHHHHS.......CTTB--EEEEEEESSEEEEEEE--TTEBHHH CS
     Pkinase   1 yekleklGeGsfGkVykave.....ketgkivAvKkikkekakkkkekkvlrEikilkklk.......hpnivrlyevfeekdelylvleyveggelad 87 
                 y++++ lG+G+f   +++ +     +++++ v+vK+ k+ k+  +++   l E+k+lk l+          +  l++vf+  ++l++v e+++  +l +
  KOO21695.1 148 YVVIQYLGSGTFCHTVQCEDlragpSSRHRFVCVKVSKNTKDILDQN---LWEVKLLKLLSrridseqRALLPALLNVFYYRETLFIVYELLRD-NLYH 242
                 678899*********99998222223456788888888887777655...99****9988766555433457799******************5.5777 PP

                 HHH......HHSS--HHHHHHHHHHHHHHHHHHHHTTEE-SS-SGGGEEEE..TTTEEEE-SGTTSEESSSSCSBCTTTSCGGGS-HHHHTTSCBSHHH CS
     Pkinase  88 lle......rkgslseeeakkiakqilegleylHskgiiHrDlKpeNiLid..ekgelKitDFGlakelessskltsfvgtseYlAPEvlkeneyskkv 178
                 +++        + ++ ++++++a+q l+ l+ lH++++iH+DlKpeNiLi+  +  ++K++D+G a   + +    s+v ++ Y+APEv+ ++ ys+kv
  KOO21695.1 243 IYKyieecaLPKYFTCQRLREVARQCLQTLAVLHAQHVIHCDLKPENILIQslTACQVKVIDYGNAYLHHDQR--CSYVQSRAYRAPEVVLGHAYSTKV 339
                 77767566544568888**********************************544555*********9988865..9*********************** PP

                 HHHHHHHHHHHHHHSS-STTTSSHHHHHHHHHHTHHHHHHHCT.SHH...HHHTTS.....................................-HHHHH CS
     Pkinase 179 DvWslGvilyelltgkppfsgekgkekvekeldqlekilkilg.etkeklpeasei.....................................seeakd 239
                 D+Ws G+il+ellt++ +f +++ ++  ++++  l  + k l  e +++    +++                                     ++++ +
  KOO21695.1 340 DLWSFGCILMELLTNRLLFDNRSVQSLLASHIALLGPFPKRLVeEGQLSEYYFEHMgssshpqtlvgkhdgrlcrmkptstslealcerhgadDPNFAS 438
                 ********************888888777777764444443332434444444444777888999********************************** PP

                 HHHHHT-SSGCCSTTHHHHHTSGGG CS
     Pkinase 240 llkkllkkdpkkRltaeellqhpyl 264
                 ++++ll+ dp +R tae++lqhp+l
  KOO21695.1 439 FIRQLLALDPVERATAEKALQHPFL 463
                 ***********************97 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.6   0.0   1.1e-21     4e-18       4     200 ..     151     353 ..     148     365 .. 0.81

  Alignments for each domain:
  == domain 1  score: 65.6 bits;  conditional E-value: 1.1e-21
                  EEEEEEESSEEEEEEEEET.TTTSSEEEEEEEEESTTSSHHHHHHHHHHHHHHHTS.......-BTTB--EEEEEESSSSEEEEEE--TTE..BHHHH CS
  Pkinase_Tyr   4 gkklGeGafGkVvegtlkg.ekekkevkVavKtlkeeateeekeelleeakimkkl.......khpnivkllgvctkeepllivteyvkgG..dLlkf 91 
                   + lG+G+f + v+++  +   ++++  V vK+ k++++    ++ l e+k++k l       +   + +ll v + +e+l+iv e+++ +  ++ k+
   KOO21695.1 151 IQYLGSGTFCHTVQCEDLRaGPSSRHRFVCVKVSKNTKDIL--DQNLWEVKLLKLLsrridseQRALLPALLNVFYYRETLFIVYELLRDNlyHIYKY 246
                  678*******99999866658999999*******8877765..334445555543310022123345778999999************99877999** PP

                  HHHTC.TTTSBHHHHHHHHHHHHHHHHHHHHTTEEEST-SGGGEEEEE..TTEEEE-STTTHEETTTSSEEEETTSSTSGGGGS-HHHHHHSEEEHHH CS
  Pkinase_Tyr  92 Lrkke.kekltlkdllsfalqvAkGmeyLeskklvHrdlaarNvLlse..nkvvkisDfGLardiekddeyvkkeeaklpvkWmapEslkekkftsks 186
                  +++ +  + +t+++l ++a q  + ++ L++++++H dl   N+L+++    +vk+ D+G a  +       ++ +   +  + apE++  + +++k 
   KOO21695.1 247 IEECAlPKYFTCQRLREVARQCLQTLAVLHAQHVIHCDLKPENILIQSltACQVKVIDYGNAYLH-----HDQRCSYVQSRAYRAPEVVLGHAYSTKV 339
                  *9985156689999*********************************9545699******99988.....23333444556799************** PP

                  HHHHHHHHHHHHHT CS
  Pkinase_Tyr 187 DvWsfGvllwEift 200
                  D WsfG +l+E++t
   KOO21695.1 340 DLWSFGCILMELLT 353
                  ************98 PP

>> APH  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.1   0.0   5.4e-07    0.0019     141     196 ..     255     308 ..     233     312 .. 0.77

  Alignments for each domain:
  == domain 1  score: 18.1 bits;  conditional E-value: 5.4e-07
                 TCCHHHHHHHHHHHHHHHH--SSS-EEEE-SS-SGGGEEEC....TTEEEEE---TT- CS
         APH 141 lldlleeleeqvlaalaallpgelptvllHgDlhpgNllvd..pddgrvtGviDfeda 196
                 ++   ++l+e v+++++++l+   ++ ++H+Dl+p N+l++      +v  viD + a
  KOO21695.1 255 YFT-CQRLRE-VARQCLQTLAVLHAQHVIHCDLKPENILIQslT-ACQV-KVIDYGNA 308
                 333.678888.***********9*****************9742.3333.48888776 PP

>> Kdo  Lipopolysaccharide kinase (Kdo/WaaP) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   0.7   6.3e-06     0.023     121     171 ..     262     310 ..     230     317 .. 0.81

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 6.3e-06
         Kdo 121 rallkavgrliaklhragvnHadlyaknillqqeeeeeaeiwliDldkarl 171
                 r+  ++  ++ a lh+ +v H dl + nil+q     + ++ +iD   a+l
  KOO21695.1 262 REVARQCLQTLAVLHAQHVIHCDLKPENILIQSLT--ACQVKVIDYGNAYL 310
                 4445555578899********************98..999*****877665 PP

>> RIO1  RIO1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.2   2.8e-05       0.1      94     153 ..     251     309 ..     237     320 .. 0.75

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 2.8e-05
                 EGGBHHHCG-HHHHHHHHHHHHHHHHHHHHTSTEEESS-STTSEEEETT...EEEE--GTTEE CS
        RIO1  94 aapklkdveeeeeaeelyeevleemrklykeaglvHaDLSeyNvlvded...kvviIDvsQav 153
                 a+pk    +    ++e+++++l+++++l   ++++H+DL   N+l+++    +v +ID + a 
  KOO21695.1 251 ALPKYFTCQ---RLREVARQCLQTLAVLH-AQHVIHCDLKPENILIQSLtacQVKVIDYGNAY 309
                 444444444...8999*******887776.99*************986433577888887664 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (596 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       410  (0.022868); expected 358.6 (0.02)
Passed bias filter:                      339  (0.0189079); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.53u 0.28s 00:00:00.81 Elapsed: 00:00:00.41
# Mc/sec: 4397.08
//
Query:       KOO21696.1  [L=646]
Description: ATP-binding cassette superfamily [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    9.1e-32  110.4   0.0    3.8e-19   69.6   0.0    3.2  2  ABC_tran         ABC transporter
    1.9e-15   57.5   0.5     0.0016   18.3   0.1    3.3  3  AAA_21           AAA domain, putative AbiEii toxin, Type IV T
    6.4e-11   42.1   0.0      0.007   15.8   0.0    3.9  3  SMC_N            RecF/RecN/SMC N terminal domain
      3e-08   33.3   0.2     0.0015   18.2   0.0    2.7  2  AAA_29           P-loop containing region of AAA domain
    4.1e-08   33.3  23.3    4.1e-07   30.2   5.8    4.2  3  ABC_tran_CTD     ABC transporter C-terminal domain
    5.2e-08   33.6   9.0      0.012   16.1   0.0    4.2  3  AAA_23           AAA domain
    2.6e-07   31.3   0.1      0.056   14.0   0.0    3.4  2  AAA_18           AAA domain
    8.6e-07   29.0   2.4     0.0014   18.6   0.0    2.7  2  RsgA_GTPase      RsgA GTPase
    1.7e-06   28.2   3.6     0.0004   20.6   0.0    3.6  3  AAA_33           AAA domain
    5.2e-06   26.5   0.2        0.2   11.6   0.1    2.9  2  NACHT            NACHT domain
    2.3e-05   24.4   0.4       0.22   11.4   0.0    2.6  2  Rad17            Rad17 P-loop domain
    3.3e-05   24.2   0.0       0.37   11.2   0.0    3.3  3  RNA_helicase     RNA helicase
    0.00014   22.2   0.4        0.4   10.9   0.0    3.2  2  AAA_22           AAA domain
    0.00019   21.1   5.9        0.2   11.3   0.0    3.9  4  AAA_27           AAA domain
    0.00032   21.1   0.0        1.1    9.7   0.0    2.9  2  AAA              ATPase family associated with various cellul
    0.00082   19.8  11.5       0.18   12.2   0.0    3.8  2  AAA_16           AAA ATPase domain
     0.0012   18.6   0.1        2.3    7.8   0.0    2.6  2  AAA_15           AAA ATPase domain
     0.0012   18.6   0.0       0.82    9.4   0.0    2.7  2  AAA_24           AAA domain
     0.0014   18.3   4.2       0.42   10.2   0.1    4.0  4  AAA_25           AAA domain
     0.0022   17.8   2.6       0.32   10.7   0.0    3.5  2  AAA_30           AAA domain
     0.0027   16.8   0.2      0.035   13.2   0.0    2.5  2  T2SSE            Type II/IV secretion system protein
     0.0028   17.4   0.3        1.4    8.6   0.0    3.4  3  IstB_IS21        IstB-like ATP binding protein
     0.0036   17.3   0.0        5.3    7.1   0.0    3.0  2  AAA_14           AAA domain
     0.0048   16.1   0.1          2    7.5   0.0    2.5  2  DAP3             Mitochondrial ribosomal death-associated pro
  ------ inclusion threshold ------
      0.012   15.7   3.6       0.75    9.9   0.0    3.0  2  MMR_HSR1         50S ribosome-binding GTPase
      0.016   14.4   0.2        1.4    8.0   0.0    2.5  2  DUF815           Protein of unknown function (DUF815)
      0.018   14.8   0.1        3.2    7.5   0.0    2.5  2  PduV-EutP        Ethanolamine utilisation - propanediol utili
      0.022   14.1   3.3       0.19   11.1   0.1    2.8  2  Mg_chelatase     Magnesium chelatase, subunit ChlI
      0.026   14.4   0.8        6.1    6.7   0.1    2.9  2  NTPase_1         NTPase
      0.028   14.4   0.4       0.63   10.1   0.1    2.4  2  TsaE             Threonylcarbamoyl adenosine biosynthesis pro
      0.052   13.6   6.9        1.4    8.9   0.2    3.3  3  AAA_5            AAA domain (dynein-related subfamily)
      0.058   12.5   0.0        4.9    6.2   0.0    2.2  2  G-alpha          G-protein alpha subunit
      0.071   13.2   1.6        9.5    6.2   0.0    3.3  2  Dynamin_N        Dynamin family
      0.076   13.3  12.7        0.2   11.9   0.0    3.9  2  AAA_28           AAA domain
      0.079   12.8   0.4        5.1    6.9   0.0    2.6  2  dNK              Deoxynucleoside kinase
       0.08   12.4   0.1        3.7    7.0   0.0    2.2  2  AAA_7            P-loop containing dynein motor region
      0.098   12.6   1.3        3.1    7.7   0.0    2.8  2  ATPase_2         ATPase domain predominantly from Archaea
        0.1   12.6   0.5        6.7    6.7   0.0    2.4  2  MutS_V           MutS domain V
       0.15   11.7   0.1        9.8    5.8   0.1    2.6  2  Viral_helicase1  Viral (Superfamily 1) RNA helicase
       0.17   12.0   1.6       0.67   10.1   0.2    2.3  2  Fibrillin_U_N    Fibrillin 1 unique N-terminal domain
       0.19   11.3   5.4        2.8    7.5   0.0    3.7  3  cobW             CobW/HypB/UreG, nucleotide-binding domain
       0.46    9.2   1.3         19    3.9   0.1    2.2  2  Adeno_IVa2       Adenovirus IVa2 protein
        9.3    4.7  19.8         11    4.4  15.6    2.4  2  FUSC             Fusaric acid resistance protein family


Domain annotation for each model (and alignments):
>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.6   0.0     9e-22   3.8e-19      10     137 .]       2     166 ..       1     166 [. 0.88
   2 !   37.3   0.0   8.4e-12   3.5e-09       1      67 [.     286     359 ..     286     458 .. 0.79

  Alignments for each domain:
  == domain 1  score: 69.6 bits;  conditional E-value: 9e-22
                 TTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGGB-HHHCCHCEEEE-SS--S-TTSBHHHH............................. CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx............................. RF
    ABC_tran  10 egekvaivGenGaGKStLlkllagllkpteGeilldgkdlkeqeleslrkeigvlpqepqlfpeltvren............................. 79 
                 ++e++ ++G+nG+GKStLlk+++       G +   g +l++q +   r ++g+l+q++   +  +vre+                             
  KOO21696.1   2 PNERWSLLGPNGCGKSTLLKTISSAA---VGGV---GGELSNQIHVNPRLRFGMLEQTAVSGSARSVREEvmsrmadyqrakaaleaaqascvtgsese 94 
                 5799******************9986...5777...7778888999************99999999****9****999999999999999999999988 PP

                 .................HHHTCHHHHHHHSTTGGTTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTTT CS
                 .................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  80 .................esdeeiekalsklglkelkdtvvksspssLSgGqkqrvalarallkkpkllllDEpta 137
                                  + +++++ +ls lg +    +  ++  ss+SgG++ r+ lar+ll++p+ll++DEpt+
  KOO21696.1  95 lkaldqassdfeaaggyTVERRVSLVLSGLGFEL---DEFDKPCSSFSGGWQMRIGLARLLLSEPELLIMDEPTN 166
                 8888888888888887777777888888888666...5555667******************************8 PP

  == domain 2  score: 37.3 bits;  conditional E-value: 8.4e-12
                 EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGG........B-HHHCCHCEEEE-SS CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx........xxxxxxxxxxxxxxxx RF
    ABC_tran   1 lknvslklkegekvaivGenGaGKStLlkllagllkpteGeilldgkdlke........qeleslrkeigvlpqe 67 
                 l+ v++++++g+++ + G+nGaGKStLlk+l+g l  ++G+  l+++ l+         qel++++  ++++   
  KOO21696.1 286 LRGVEMEVRRGQRIILRGPNGAGKSTLLKALSGTLPLAAGTR-LEDDRLRLgvfaqdlaQELPQAEIALSYVARS 359
                 67899********************************99995.55444444455555555566666666665555 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.3   0.1   3.7e-06    0.0016       4      27 ..       8      28 ..       7      54 .. 0.74
   2 !   18.3   0.0   3.9e-06    0.0016     250     301 ..     151     196 ..     139     198 .. 0.83
   3 !   17.4   0.0   7.5e-06    0.0031       4      21 ..     301     318 ..     299     346 .. 0.84

  Alignments for each domain:
  == domain 1  score: 18.3 bits;  conditional E-value: 3.7e-06
      AAA_21  4 liGpNgsGKSnLLdaldllarldr 27
                l GpNg+GKS+LL++++ +a    
  KOO21696.1  8 LLGPNGCGKSTLLKTISSAA---V 28
                78**************9984...3 PP

  == domain 2  score: 18.3 bits;  conditional E-value: 3.9e-06
      AAA_21 250 allralkkgsllliDEpEngLHPkllrrllellkelsrngaQviltTHSpll 301
                 +ll+ +    ll+ DEp n+L+ ++ r l+e +++ s     v++++H+  +
  KOO21696.1 151 LLLSEP---ELLIMDEPTNHLDAAARRWLAEYISAYSG---TVLVVSHDEAF 196
                 444444...9***********************88888...*******9665 PP

  == domain 3  score: 17.4 bits;  conditional E-value: 7.5e-06
      AAA_21   4 liGpNgsGKSnLLdaldl 21 
                 l GpNg+GKS+LL+al++
  KOO21696.1 301 LRGPNGAGKSTLLKALSG 318
                 55**************86 PP

>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.0   0.0    0.0021      0.86      28      44 ..       7      23 ..       2      27 .. 0.88
   2 !   12.3   0.0    0.0002     0.081     158     205 ..     155     200 ..      55     209 .. 0.82
   3 !   15.8   0.0   1.7e-05     0.007      28      85 ..     300     357 ..     287     378 .. 0.82

  Alignments for each domain:
  == domain 1  score: 9.0 bits;  conditional E-value: 0.0021
                EEEESTTSSHHHHHHHH CS
                xxxxxxxxxxxxxxxxx RF
       SMC_N 28 aivGpNGSGKsnlldAi 44
                +++GpNG+GKs ll  i
  KOO21696.1  7 SLLGPNGCGKSTLLKTI 23
                589**********9988 PP

  == domain 2  score: 12.3 bits;  conditional E-value: 0.0002
                 --SEEEECTTTTTS-HHHHHHHHHHHHHHCTTSEEEEE-SSHHHCCC- CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N 158 paplyllDeidaaLDeknvkkvaellkeksknaQfivislreemleka 205
                    l ++De   +LD++ ++ +ae++ + s    ++v+s++e +++ a
  KOO21696.1 155 EPELLIMDEPTNHLDAAARRWLAEYISAYS--GTVLVVSHDEAFVSVA 200
                 445889***********************9..89*********99988 PP

  == domain 3  score: 15.8 bits;  conditional E-value: 1.7e-05
                 EEEESTTSSHHHHHHHHHHHCTT.TTTTTTCHCCCCCC--BTTCSSTTEEEEEEEEEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N  28 aivGpNGSGKsnlldAilFvLGersakklrseklsdlihkskekasvkkaeveitfdn 85 
                 ++ GpNG+GKs ll A++ +L  ++ + l  ++l+  +++++  +++ +ae+++ +  
  KOO21696.1 300 ILRGPNGAGKSTLLKALSGTLPLAAGTRLEDDRLRLGVFAQDLAQELPQAEIALSYVA 357
                 456*******************************999999999999999999998844 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.1   0.1   0.00029      0.12      26      45 ..       7      26 ..       1      32 [. 0.80
   2 !   18.2   0.0   3.6e-06    0.0015      15      43 ..     289     317 ..     285     324 .. 0.83

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 0.00029
      AAA_29 26 lltGpsGsGKSTllDAiqal 45
                 l Gp+G GKSTll  i+  
  KOO21696.1  7 SLLGPNGCGKSTLLKTISSA 26
                689**********9877765 PP

  == domain 2  score: 18.2 bits;  conditional E-value: 3.6e-06
      AAA_29  15 htieidlkgatlltGpsGsGKSTllDAiq 43 
                  ++e+++ + ++l Gp+G+GKSTll A++
  KOO21696.1 289 VEMEVRRGQRIILRGPNGAGKSTLLKALS 317
                 56778755599**************9986 PP

>> ABC_tran_CTD  ABC transporter C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.5   0.1       1.7   7.1e+02      12      34 ..      65      87 ..      57     108 .. 0.60
   2 !   30.2   5.8   9.8e-10   4.1e-07       6      68 ..     495     555 ..     483     556 .. 0.93
   3 !   17.6   9.5     8e-06    0.0033       3      69 .]     569     638 ..     567     638 .. 0.91

  Alignments for each domain:
  == domain 1  score: 0.5 bits;  conditional E-value: 1.7
  ABC_tran_CTD 12 eleaeIeaLEeeiaeleaeladp 34
                  e+ ++++  +  +a+lea+ a+ 
    KOO21696.1 65 EVMSRMADYQRAKAALEAAQASC 87
                  45556666666666666655544 PP

  == domain 2  score: 30.2 bits;  conditional E-value: 9.8e-10
  ABC_tran_CTD   6 eqreleeleaeIeaLEeeiaeleaeladpelysdpeklaelsaeleeleaeLeelyerWeeLe 68 
                     ++l++le++I + E+ ia+l+ae+ +++  sd  ++ el a+  +l+a+L+  y++ eeLe
    KOO21696.1 495 APKKLARLEEQIGEAETAIAALDAEMMKAG--SDVGRVRELDAQRGALQAKLDGWYAEMEELE 555
                   568899************************..******************************9 PP

  == domain 3  score: 17.6 bits;  conditional E-value: 8e-06
  ABC_tran_CTD   3 sykeqreleeleaeIeaLEeeiaeleaeladpelysdp...eklaelsaeleeleaeLeelyerWeeLee 69 
                   + ke+ e+e++ea+ eaLE   a+ ea l+++   +      +l +l  +   ++++  +++er++eL e
    KOO21696.1 569 TKKEREEFETIEADVEALEVAAAKAEATLEAAKNAKPRlpqMELLALASKASSARNAAHAKMERYMELDE 638
                   78***************************99997755565677*************************76 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.0   2.9e-05     0.012      25      53 ..       9      38 ..       7     118 .. 0.76
   2 ?   -0.8   0.0       4.5   1.9e+03      86     123 ..     211     260 ..     177     275 .. 0.56
   3 !   15.9   0.0   3.3e-05     0.014      23      41 ..     300     318 ..     289     359 .. 0.91

  Alignments for each domain:
  == domain 1  score: 16.1 bits;  conditional E-value: 2.9e-05
      AAA_23 25 tGpNGaGKTTildAiklaL.ygetprlsrk 53
                 GpNG+GK+T+l  i  a  +g  ++ls++
  KOO21696.1  9 LGPNGCGKSTLLKTISSAAvGGVGGELSNQ 38
                7**************988724444555554 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 4.5
      AAA_23  86 y...........trsier.erelskkkgkttkkaklelleideleqfise 123
                 +           ++++++ +r +++ k ++ k+++ +ll + ++++++++
  KOO21696.1 211 RlclypstplsrYTIVREeRRREAEAKVEKLKMEEQRLLAVVNKWENVDR 260
                 15555555555323333313333334555556666666666666666665 PP

  == domain 3  score: 15.9 bits;  conditional E-value: 3.3e-05
      AAA_23  23 lItGpNGaGKTTildAikl 41 
                 ++ GpNGaGK+T+l A+  
  KOO21696.1 300 ILRGPNGAGKSTLLKALSG 318
                 567*************975 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.2   0.0   0.00023     0.097       3      56 ..       8      65 ..       7     109 .. 0.73
   2 !   14.0   0.0   0.00013     0.056       1      33 [.     299     344 ..     299     377 .. 0.69

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 0.00023
      AAA_18  3 ltGtpGvGKttlakeLskrlgf....gvnlrdvakenglllevdpe..aldeskrldedk 56
                l G+ G+GK+tl k +s+   +    g+ +++++ + +l+++  ++    + s r +++ 
  KOO21696.1  8 LLGPNGCGKSTLLKTISSAA-VggvgGELSNQIHVNPRLRFGMLEQtaV-SGSARSVREE 65
                68**************9995.45589***************99999852.3333333332 PP

  == domain 2  score: 14.0 bits;  conditional E-value: 0.00013
      AAA_18   1 IlltGtpGvGKttlakeLskrlgf.............gvnlrdvak 33 
                 I+l G+ G+GK+tl k+Ls  l +             gv  +d+a+
  KOO21696.1 299 IILRGPNGAGKSTLLKALSGTLPLaagtrleddrlrlGVFAQDLAQ 344
                 99****************9887334433344443344444444443 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.5   0.1     0.002      0.84     103     123 ..       7      27 ..       1      42 [. 0.80
   2 !   18.6   0.0   3.3e-06    0.0014      47     126 ..     246     323 ..     235     333 .. 0.78

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 0.002
                  EEECSTTSSHHHHHHHHCTT- CS
  RsgA_GTPase 103 vlvGqSGvGKStLinallpel 123
                   l+G+ G GKStL++++ + +
   KOO21696.1   7 SLLGPNGCGKSTLLKTISSAA 27 
                  699*************99874 PP

  == domain 2  score: 18.6 bits;  conditional E-value: 3.3e-06
                  -EEEEEEE-GGG--HHHHHHHHHHHHHHTTSEEEE--TTTHTTHHHHHHHCTT.SEEEEECSTTSSHHHHHHHHCTT---- CS
  RsgA_GTPase  47 iepvivlnKiDlleeeeeleelkeelealgyevllvsaktkegleelkellkd.ktsvlvGqSGvGKStLinallpelelk 126
                   +++ v+nK + +++++++++lk+  +a++++  l sa     l+ ++ +++  + ++l G+ G+GKStL++al ++l l+
   KOO21696.1 246 QRLLAVVNKWENVDRSKAADALKQLDKAADVAHALGSAP---ILRGVEMEVRRgQRIILRGPNGAGKSTLLKALSGTLPLA 323
                  456778999999999997888888888888877777777...555555555555********************9987665 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.5   0.0     0.021       8.8       4      19 ..       8      23 ..       6      85 .. 0.90
   2 !   20.6   0.0   9.6e-07    0.0004       2      51 ..     299     351 ..     299     375 .. 0.86
   3 ?   -1.1   0.1       4.6   1.9e+03      31     132 ..     562     585 ..     546     626 .. 0.52

  Alignments for each domain:
  == domain 1  score: 6.5 bits;  conditional E-value: 0.021
      AAA_33  4 lvGlpGsGKstlaerl 19
                l G++G+GKstl++ +
  KOO21696.1  8 LLGPNGCGKSTLLKTI 23
                67**********9976 PP

  == domain 2  score: 20.6 bits;  conditional E-value: 9.6e-07
      AAA_33   2 vllvGlpGsGKstlaerllkklg...avllssdtlrrrlfgtdqqsktdytrv 51 
                 ++l G++G+GKstl++ l   l+   +++l+ d lr  +f++d  ++  ++++
  KOO21696.1 299 IILRGPNGAGKSTLLKALSGTLPlaaGTRLEDDRLRLGVFAQDLAQELPQAEI 351
                 6899***************999999***************9888777766663 PP

  == domain 3  score: -1.1 bits;  conditional E-value: 4.6
      AAA_33  31 dtlrrrlfgtdqqsktdytrvldrlyqilnelarkalsagrnvildatnlsrrerarflklarrlgvpvrivvvetdeetlkeRlakRaangddrsevp 129
                  ++++ +++++++                                                                              + + +e++
  KOO21696.1 562 QAMLEEVTKKERE------------------------------------------------------------------------------EFETIEAD 582
                 4444444433332..............................................................................22222222 PP

      AAA_33 130 eea 132
                  ea
  KOO21696.1 583 VEA 585
                 222 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.6   0.1   0.00048       0.2       5      24 ..       8      27 ..       5      43 .. 0.87
   2 !   11.5   0.0   0.00049       0.2       2      22 ..     298     318 ..     297     356 .. 0.89

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 0.00048
                EEC-TTTCHHHHHHHHHHHH CS
       NACHT  5 lqGeaGsGKTtLlqklalaw 24
                l G++G+GK+tLl+ + +a+
  KOO21696.1  8 LLGPNGCGKSTLLKTISSAA 27
                78**************9886 PP

  == domain 2  score: 11.5 bits;  conditional E-value: 0.00049
                 CEEEEC-TTTCHHHHHHHHHH CS
       NACHT   2 lvilqGeaGsGKTtLlqklal 22 
                  +il+G++G GK+tLl+ l  
  KOO21696.1 298 RIILRGPNGAGKSTLLKALSG 318
                 689**************9875 PP

>> Rad17  Rad17 P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.4   0.0   0.00052      0.22      50      71 ..       8      29 ..       3      88 .. 0.72
   2 !   10.3   0.2    0.0012      0.48      40      69 ..     291     320 ..     230     335 .. 0.88

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00052
       Rad17 50 isGPsGCgkstvvkvLskelgi 71
                + GP GCgkst +k +s   + 
  KOO21696.1  8 LLGPNGCGKSTLLKTISSAAVG 29
                56*************9987654 PP

  == domain 2  score: 10.3 bits;  conditional E-value: 0.0012
       Rad17  40 LesrkkriLLisGPsGCgkstvvkvLskel 69 
                 +e r+ + +++ GP G gkst +k Ls  l
  KOO21696.1 291 MEVRRGQRIILRGPNGAGKSTLLKALSGTL 320
                 555666677889**************9765 PP

>> RNA_helicase  RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.2   0.0   0.00089      0.37       3      26 ..       8      31 ..       6      68 .. 0.83
   2 !    8.5   0.0    0.0063       2.6       1      20 [.     299     318 ..     299     331 .. 0.87
   3 ?   -0.4   0.0       3.5   1.5e+03      60      93 ..     447     480 ..     442     483 .. 0.75

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00089
  RNA_helicase  3 lyGpsgeGKStlakeLakallkkl 26
                  l Gp+g+GKStl k++++a  + +
    KOO21696.1  8 LLGPNGCGKSTLLKTISSAAVGGV 31
                  78*************998877655 PP

  == domain 2  score: 8.5 bits;  conditional E-value: 0.0063
  RNA_helicase   1 iwlyGpsgeGKStlakeLak 20 
                   i+l Gp+g GKStl k L+ 
    KOO21696.1 299 IILRGPNGAGKSTLLKALSG 318
                   6899***********99865 PP

  == domain 3  score: -0.4 bits;  conditional E-value: 3.5
  RNA_helicase  60 qvkdeenpsdlaelirlvsstpyplnmasleekg 93 
                   ++  +   + + +   +v  +p p++m + e k+
    KOO21696.1 447 ETDRGVRNNFVGDASAVVVAAPAPPPMSAEEAKR 480
                   4444435558888889999**********99985 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.0   0.0     0.008       3.4      10      29 ..       8      27 ..       6      95 .. 0.82
   2 !   10.9   0.0   0.00097       0.4       6      33 ..     297     324 ..     291     408 .. 0.84

  Alignments for each domain:
  == domain 1  score: 8.0 bits;  conditional E-value: 0.008
      AAA_22 10 vtGesGtGKTtllrrlleql 29
                + G+ G+GK+tll+++ + +
  KOO21696.1  8 LLGPNGCGKSTLLKTISSAA 27
                67************988765 PP

  == domain 2  score: 10.9 bits;  conditional E-value: 0.00097
      AAA_22   6 gilvvtGesGtGKTtllrrlleqldeea 33 
                 + +++ G+ G+GK+tll+ l  +l+ +a
  KOO21696.1 297 QRIILRGPNGAGKSTLLKALSGTLPLAA 324
                 568999*************999887554 PP

>> AAA_27  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.4   0.0    0.0035       1.4      32      83 ..       9      60 ..       6      95 .. 0.73
   2 !   11.3   0.0   0.00047       0.2      30      47 ..     300     317 ..     287     322 .. 0.83
   3 ?   -1.5   0.1       3.7   1.6e+03     147     198 ..     463     514 ..     457     525 .. 0.64
   4 ?    0.8   0.7      0.77   3.2e+02     155     200 ..     530     575 ..     516     583 .. 0.78

  Alignments for each domain:
  == domain 1  score: 8.4 bits;  conditional E-value: 0.0035
      AAA_27 32 yGpNEAGKstalrAisdllfGipertkdnflhdakkLrigavleeadgeele 83
                +GpN  GKst+l+ is+   G    +  n +h + +Lr g + ++a   + +
  KOO21696.1  9 LGPNGCGKSTLLKTISSAAVGGVGGELSNQIHVNPRLRFGMLEQTAVSGSAR 60
                7***************999999999999999999999987655544444444 PP

  == domain 2  score: 11.3 bits;  conditional E-value: 0.00047
      AAA_27  30 liyGpNEAGKstalrAis 47 
                 ++ GpN AGKst+l+A+s
  KOO21696.1 300 ILRGPNGAGKSTLLKALS 317
                 678*************97 PP

  == domain 3  score: -1.5 bits;  conditional E-value: 3.7
      AAA_27 147 lLfeasaGlaslrevleaLeaeadelfkprkskkrainealeeleeakkelr 198
                 ++++a a     +e  ++L++e+++  k ++ +++++++ +e++ ea++++ 
  KOO21696.1 463 VVVAAPAPPPMSAEEAKRLREEQRNAQKLQNGAPKKLARLEEQIGEAETAIA 514
                 5555555555566666777777777777777777777777777766666654 PP

  == domain 4  score: 0.8 bits;  conditional E-value: 0.77
      AAA_27 155 laslrevleaLeaeadelfkprkskkrainealeeleeakkelrea 200
                 +++l + + aL+a+ d ++++ ++ +++  +a++ lee++k+ re+
  KOO21696.1 530 VRELDAQRGALQAKLDGWYAEMEELEAQRLRAQAMLEEVTKKEREE 575
                 3456667788***********9999999999999999998887764 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.7   0.0    0.0026       1.1       3      22 ..       8      27 ..       7      86 .. 0.78
   2 !    8.2   0.0    0.0077       3.2       1      22 [.     299     320 ..     299     357 .. 0.85

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 0.0026
                EESSTTSSHHHHHHHHHHHH CS
         AAA  3 lyGppGtGKTllakavakel 22
                l Gp G+GK++l k + + +
  KOO21696.1  8 LLGPNGCGKSTLLKTISSAA 27
                78************998875 PP

  == domain 2  score: 8.2 bits;  conditional E-value: 0.0077
                 EEEESSTTSSHHHHHHHHHHHH CS
         AAA   1 vllyGppGtGKTllakavakel 22 
                 ++l Gp G GK++l ka+  +l
  KOO21696.1 299 IILRGPNGAGKSTLLKALSGTL 320
                 5899*************98876 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.2   0.0   0.00044      0.18      29      91 ..       8      76 ..       4     184 .. 0.64
   2 ?    5.2   9.1     0.061        25      20      76 ..     294     342 ..     285     639 .. 0.82

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 0.00044
      AAA_16 29 lsGesGvGKsslvrellralekdggiflrgkcdqlesa.......ipysalaqalareellrqlldeaes 91
                l G+ G+GKs+l++++  a+ +  g  l+ + + +++        ++ s  a+   ree++  ++d +++
  KOO21696.1  8 LLGPNGCGKSTLLKTISSAAVGGVGGELSNQIHVNPRLrfgmleqTAVSGSARSV-REEVMSRMADYQRA 76
                79***************98887722223333333311111111113334455555.44554444444333 PP

  == domain 2  score: 5.2 bits;  conditional E-value: 0.061
      AAA_16  20 rsgrpelvllsGesGvGKsslvrellralekd..........ggiflrgkcdqlesaipysalaqal 76 
                 r+g  + ++l+G+ G GKs+l+++l   l  +          +                + ++aq l
  KOO21696.1 294 RRG--QRIILRGPNGAGKSTLLKALSGTLPLAagtrleddrlR----------------LGVFAQDL 342
                 555..5689*************999976665522222222222................22233333 PP

>> AAA_15  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.8   0.0    0.0056       2.3      28      43 ..       8      23 ..       4      25 .. 0.90
   2 !    7.8   0.0    0.0058       2.4      27      43 ..     300     316 ..     286     319 .. 0.85

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 0.0056
      AAA_15 28 liGkNnsGKSsileal 43
                l G+N++GKS++l+ +
  KOO21696.1  8 LLGPNGCGKSTLLKTI 23
                67***********988 PP

  == domain 2  score: 7.8 bits;  conditional E-value: 0.0058
      AAA_15  27 vliGkNnsGKSsileal 43 
                 +l G+N++GKS++l+al
  KOO21696.1 300 ILRGPNGAGKSTLLKAL 316
                 677*************9 PP

>> AAA_24  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.2   0.0     0.018       7.5       7      26 ..       8      26 ..       3      39 .. 0.86
   2 !    9.4   0.0     0.002      0.82       2      26 ..     296     319 ..     295     334 .. 0.84

  Alignments for each domain:
  == domain 1  score: 6.2 bits;  conditional E-value: 0.018
      AAA_24  7 iyGpsgiGKTtlakelgpkp 26
                + Gp+g GK+tl+k++  ++
  KOO21696.1  8 LLGPNGCGKSTLLKTI-SSA 26
                89************99.554 PP

  == domain 2  score: 9.4 bits;  conditional E-value: 0.002
      AAA_24   2 klkiliyGpsgiGKTtlakelgpkp 26 
                 +++i++ Gp+g+GK+tl+k l   +
  KOO21696.1 296 GQRIILRGPNGAGKSTLLKAL-SGT 319
                 689****************99.444 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.2   0.0     0.034        14      37      60 ..       7      30 ..       2      44 .. 0.81
   2 ?   -1.3   0.0       3.2   1.3e+03     120     147 ..     163     190 ..     145     192 .. 0.66
   3 !   10.2   0.1     0.001      0.42      12      54 ..     276     317 ..     260     330 .. 0.80
   4 ?    0.6   0.4      0.88   3.7e+02      75     123 ..     547     595 ..     537     616 .. 0.70

  Alignments for each domain:
  == domain 1  score: 5.2 bits;  conditional E-value: 0.034
      AAA_25 37 llaGapgtGKttlaldlalavatG 60
                 l G+ g+GK+tl+  ++ a + G
  KOO21696.1  7 SLLGPNGCGKSTLLKTISSAAVGG 30
                588**********98888777755 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 3.2
      AAA_25 120 drggtlltadvdaleaaieevegvrlvv 147
                 +  ++l +a+ ++l++ i ++ g +lvv
  KOO21696.1 163 EPTNHLDAAARRWLAEYISAYSGTVLVV 190
                 3333445667788888888877777776 PP

  == domain 3  score: 10.2 bits;  conditional E-value: 0.001
      AAA_25  12 vadlaapppprrwlvkgllpagelallaGapgtGKttlaldla 54 
                 va+   + p +r + +++ ++g  ++l G+ g+GK+tl+  l+
  KOO21696.1 276 VAHALGSAPILRGVEMEV-RRGQRIILRGPNGAGKSTLLKALS 317
                 555566667777777788.69*****************97665 PP

  == domain 4  score: 0.6 bits;  conditional E-value: 0.88
      AAA_25  75 lyvsaEdsedelrrRlravgealrddarllvldlagv.eslpLfakdrgg 123
                 +y   E+ e   r R++a++e+++ ++r+ + +++   e l ++a++++ 
  KOO21696.1 547 WYAEMEELE-AQRLRAQAMLEEVTKKEREEFETIEADvEALEVAAAKAEA 595
                 566666666.6788999999999999999998875554555544444333 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.2   0.2     0.036        15      23      42 ..       8      27 ..       3     200 .. 0.87
   2 !   10.7   0.0   0.00076      0.32      21      45 ..     299     323 ..     290     426 .. 0.71

  Alignments for each domain:
  == domain 1  score: 5.2 bits;  conditional E-value: 0.036
      AAA_30 23 ltGpAGtGKttalkalreaw 42
                l Gp G GK+t+lk++  a+
  KOO21696.1  8 LLGPNGCGKSTLLKTISSAA 27
                679************97765 PP

  == domain 2  score: 10.7 bits;  conditional E-value: 0.00076
      AAA_30  21 avltGpAGtGKttalkalreaweaa 45 
                  +l Gp G+GK+t+lkal  ++  a
  KOO21696.1 299 IILRGPNGAGKSTLLKALSGTLPLA 323
                 689**************97766544 PP

>> T2SSE  Type II/IV secretion system protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.3   0.2       0.7   2.9e+02     136     151 ..      10      25 ..       6      29 .. 0.87
   2 !   13.2   0.0   8.4e-05     0.035      98     154 ..     231     321 ..     164     330 .. 0.76

  Alignments for each domain:
  == domain 1  score: 0.3 bits;  conditional E-value: 0.7
       T2SSE 136 GgTgsGKttllyallk 151
                 G+ g GK+tll ++ +
  KOO21696.1  10 GPNGCGKSTLLKTISS 25 
                 9**********99865 PP

  == domain 2  score: 13.2 bits;  conditional E-value: 8.4e-05
       T2SSE  98 ksakeltlddlgaeealk..................................ekiaevlrkavrerglilvsGgTgsGKttllyallkein 154
                 ++++e ++++l +ee+                                    + i + ++  vr+ + i++ G+ g GK+tll al  +++
  KOO21696.1 231 RREAEAKVEKLKMEEQRLlavvnkwenvdrskaadalkqldkaadvahalgsAPILRGVEMEVRRGQRIILRGPNGAGKSTLLKALSGTLP 321
                 444455666666666555666666666666666666666666666666677677888899999**********************998876 PP

>> IstB_IS21  IstB-like ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.2   0.2     0.076        32      50      72 ..       6      28 ..       2      33 .. 0.87
   2 ?   -0.8   0.0       2.7   1.1e+03     107     138 ..     154     183 ..     145     198 .. 0.75
   3 !    8.6   0.0    0.0034       1.4      44      68 ..     293     317 ..     284     361 .. 0.85

  Alignments for each domain:
  == domain 1  score: 4.2 bits;  conditional E-value: 0.076
   IstB_IS21 50 ivllGpsGvGKshlaialgveav 72
                  llGp G GKs l  +++ +av
  KOO21696.1  6 WSLLGPNGCGKSTLLKTISSAAV 28
                579***********999999887 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 2.7
   IstB_IS21 107 lkvdllilDdlgllpldqaeaellfeviekry 138
                  +++lli+D+  +++ld a+++ l e i++ y
  KOO21696.1 154 SEPELLIMDEP-TNHLDAAARRWLAEYISA-Y 183
                 5689*****96.578999999999998875.4 PP

  == domain 3  score: 8.6 bits;  conditional E-value: 0.0034
   IstB_IS21  44 iekkenivllGpsGvGKshlaialg 68 
                 +++ + i+l Gp G+GKs l  al+
  KOO21696.1 293 VRRGQRIILRGPNGAGKSTLLKALS 317
                 688999**************99986 PP

>> AAA_14  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.9   0.0     0.014       5.9       7      24 ..       8      25 ..       3      41 .. 0.86
   2 ?    7.1   0.0     0.013       5.3       5      23 ..     299     317 ..     295     357 .. 0.87

  Alignments for each domain:
  == domain 1  score: 6.9 bits;  conditional E-value: 0.014
      AAA_14  7 itGaRrvGKTtllkqlik 24
                + G+  +GK+tllk++ +
  KOO21696.1  8 LLGPNGCGKSTLLKTISS 25
                78***********99865 PP

  == domain 2  score: 7.1 bits;  conditional E-value: 0.013
      AAA_14   5 lvitGaRrvGKTtllkqli 23 
                 ++++G+  +GK+tllk l 
  KOO21696.1 299 IILRGPNGAGKSTLLKALS 317
                 89*************9886 PP

>> DAP3  Mitochondrial ribosomal death-associated protein 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.9   0.0     0.015       6.2      22      47 ..       2      27 ..       1      30 [. 0.83
   2 !    7.5   0.0    0.0048         2      22      40 ..     295     313 ..     289     317 .. 0.88

  Alignments for each domain:
  == domain 1  score: 5.9 bits;  conditional E-value: 0.015
                ---EEEEE-SSSSSTTTTHHHHHHHG CS
        DAP3 22 kvkrlvltGekgsGKSvlLlqalayA 47
                +++r  l G +g+GKS+lL  +   A
  KOO21696.1  2 PNERWSLLGPNGCGKSTLLKTISSAA 27
                6789999***********97766555 PP

  == domain 2  score: 7.5 bits;  conditional E-value: 0.0048
                 ---EEEEE-SSSSSTTTTH CS
        DAP3  22 kvkrlvltGekgsGKSvlL 40 
                   +r++l G +g GKS+lL
  KOO21696.1 295 RGQRIILRGPNGAGKSTLL 313
                 568**************99 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.7   0.2     0.037        15       3      22 ..       7      26 ..       5      42 .. 0.83
   2 ?    9.9   0.0    0.0018      0.75       2      22 ..     299     319 ..     298     330 .. 0.84

  Alignments for each domain:
  == domain 1  score: 5.7 bits;  conditional E-value: 0.037
                EEEESTTSSHHHHHHHHHTS CS
    MMR_HSR1  3 aivGrpNvGKStLinaltge 22
                 ++G    GKStL+++++ +
  KOO21696.1  7 SLLGPNGCGKSTLLKTISSA 26
                5789999********99865 PP

  == domain 2  score: 9.9 bits;  conditional E-value: 0.0018
                 EEEEESTTSSHHHHHHHHHTS CS
    MMR_HSR1   2 vaivGrpNvGKStLinaltge 22 
                 +++ G   +GKStL++al+g+
  KOO21696.1 299 IILRGPNGAGKSTLLKALSGT 319
                 7889999***********986 PP

>> DUF815  Protein of unknown function (DUF815)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.7   0.1     0.069        29      58      76 ..       8      26 ..       2      31 .. 0.87
   2 ?    8.0   0.0    0.0033       1.4      52      76 ..     295     319 ..     287     348 .. 0.86

  Alignments for each domain:
  == domain 1  score: 3.7 bits;  conditional E-value: 0.069
      DUF815 58 LwGarGtGKSslvkallne 76
                L G  G+GKS+l+k++ ++
  KOO21696.1  8 LLGPNGCGKSTLLKTISSA 26
                88************98765 PP

  == domain 2  score: 8.0 bits;  conditional E-value: 0.0033
      DUF815  52 pannvLLwGarGtGKSslvkallne 76 
                 + + ++L G  G+GKS+l+kal  +
  KOO21696.1 295 RGQRIILRGPNGAGKSTLLKALSGT 319
                 56789****************9765 PP

>> PduV-EutP  Ethanolamine utilisation - propanediol utilisation
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.7   0.0     0.055        23       6      23 ..       8      25 ..       3      29 .. 0.85
   2 ?    7.5   0.0    0.0077       3.2       2      23 ..     297     318 ..     296     323 .. 0.92

  Alignments for each domain:
  == domain 1  score: 4.7 bits;  conditional E-value: 0.055
   PduV-EutP  6 liGkvgsGKttLtqalkg 23
                l+G+ g+GK tL ++++ 
  KOO21696.1  8 LLGPNGCGKSTLLKTISS 25
                89***********99986 PP

  == domain 2  score: 7.5 bits;  conditional E-value: 0.0077
   PduV-EutP   2 kkilliGkvgsGKttLtqalkg 23 
                 ++i+l G+ g+GK tL +al+g
  KOO21696.1 297 QRIILRGPNGAGKSTLLKALSG 318
                 69******************98 PP

>> Mg_chelatase  Magnesium chelatase, subunit ChlI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.8   0.0      0.15        64      27      43 ..       8      24 ..       4      29 .. 0.88
   2 ?   11.1   0.1   0.00045      0.19      13      48 ..     287     322 ..     275     338 .. 0.81

  Alignments for each domain:
  == domain 1  score: 2.8 bits;  conditional E-value: 0.15
  Mg_chelatase 27 lvGppGsGKtmlakrlp 43
                  l+Gp G+GK+ l k ++
    KOO21696.1  8 LLGPNGCGKSTLLKTIS 24
                  79**********99876 PP

  == domain 2  score: 11.1 bits;  conditional E-value: 0.00045
  Mg_chelatase  13 raleiaaaGgHnlllvGppGsGKtmlakrlpsllpp 48 
                   r +e+ +  g  ++l Gp G+GK+ l k+l++ lp 
    KOO21696.1 287 RGVEMEVRRGQRIILRGPNGAGKSTLLKALSGTLPL 322
                   5666666677899*******************9995 PP

>> NTPase_1  NTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.1   0.0     0.045        19       4      23 ..       8      27 ..       5      76 .. 0.87
   2 ?    6.7   0.1     0.015       6.1       1      23 [.     298     320 ..     298     326 .. 0.88

  Alignments for each domain:
  == domain 1  score: 5.1 bits;  conditional E-value: 0.045
                EE--TTSSHHHHHHHHHHHH CS
    NTPase_1  4 iTGppGvGKtTlvkkvlell 23
                + Gp G GK+Tl+k ++++ 
  KOO21696.1  8 LLGPNGCGKSTLLKTISSAA 27
                569***********998765 PP

  == domain 2  score: 6.7 bits;  conditional E-value: 0.015
                 EEEEE--TTSSHHHHHHHHHHHH CS
    NTPase_1   1 kvfiTGppGvGKtTlvkkvlell 23 
                 ++++ Gp G GK+Tl+k ++ +l
  KOO21696.1 298 RIILRGPNGAGKSTLLKALSGTL 320
                 6899************9887766 PP

>> TsaE  Threonylcarbamoyl adenosine biosynthesis protein TsaE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.7   0.0      0.57   2.4e+02      23      42 ..       7      26 ..       3      32 .. 0.84
   2 ?   10.1   0.1    0.0015      0.63      18      42 ..     291     319 ..     267     326 .. 0.67

  Alignments for each domain:
  == domain 1  score: 1.7 bits;  conditional E-value: 0.57
                EEEESTTSSHHHHHHHHHHH CS
        TsaE 23 lLeGdLGaGKTtlvrglaka 42
                 L G+ G+GK+tl + + +a
  KOO21696.1  7 SLLGPNGCGKSTLLKTISSA 26
                688999*********99765 PP

  == domain 2  score: 10.1 bits;  conditional E-value: 0.0015
                 H....TEEEEEEESTTSSHHHHHHHHHHH CS
        TsaE  18 l....gdvilLeGdLGaGKTtlvrglaka 42 
                 +    g+ i+L+G+ GaGK+tl ++l  +
  KOO21696.1 291 MevrrGQRIILRGPNGAGKSTLLKALSGT 319
                 03333556****************98755 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.9   0.2    0.0033       1.4       4      22 ..       8      26 ..       6      36 .. 0.90
   2 ?   -1.6   0.1       5.7   2.4e+03      89     136 ..     220     269 ..     217     270 .. 0.70
   3 ?    7.1   0.0     0.013       5.2       2      23 ..     299     320 ..     298     346 .. 0.89

  Alignments for each domain:
  == domain 1  score: 8.9 bits;  conditional E-value: 0.0033
                EE--SSSSHHHHHHHGGGG CS
       AAA_5  4 LvGppGtgKselaerlaaa 22
                L+Gp G+gKs+l + +++a
  KOO21696.1  8 LLGPNGCGKSTLLKTISSA 26
                89*************9987 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 5.7
                 HHSSEEE..-SSSEEE---.......-EEEEEESS--..-TT-TTHHHHT CS
       AAA_5  89 leerrllleeggelvkakndd.llerfrviatanpld.rslnelspalrs 136
                 l++ ++  ee++++  ak ++  +e+ r++a  n+ +  +++++  al++
  KOO21696.1 220 LSRYTIVREERRREAEAKVEKlKMEEQRLLAVVNKWEnVDRSKAADALKQ 269
                 55556666666677777766666667999999999888888888888775 PP

  == domain 3  score: 7.1 bits;  conditional E-value: 0.013
                 EEEE--SSSSHHHHHHHGGGGB CS
       AAA_5   2 vlLvGppGtgKselaerlaaal 23 
                 ++L Gp G gKs+l + l+  l
  KOO21696.1 299 IILRGPNGAGKSTLLKALSGTL 320
                 79**************999766 PP

>> G-alpha  G-protein alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.2   0.0     0.012       4.9      26      44 ..       6      24 ..       3      95 .. 0.89
   2 ?    4.0   0.0     0.056        23      22      43 ..     295     316 ..     266     337 .. 0.87

  Alignments for each domain:
  == domain 1  score: 6.2 bits;  conditional E-value: 0.012
                EEEEESTTSSHHHHHHHHH CS
     G-alpha 26 llllGqseSGKsTilkqlk 44
                + llG +++GKsT+lk + 
  KOO21696.1  6 WSLLGPNGCGKSTLLKTIS 24
                569*************987 PP

  == domain 2  score: 4.0 bits;  conditional E-value: 0.056
                 .EEEEEEEESTTSSHHHHHHHH CS
     G-alpha  22 revkllllGqseSGKsTilkql 43 
                 r  +++l G ++ GKsT+lk l
  KOO21696.1 295 RGQRIILRGPNGAGKSTLLKAL 316
                 3569***************987 PP

>> Dynamin_N  Dynamin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.5   0.0      0.08        33       4     126 ..       9     180 ..       7     206 .. 0.52
   2 ?    6.2   0.0     0.023       9.5       1      21 [.     299     319 ..     299     329 .. 0.82

  Alignments for each domain:
  == domain 1  score: 4.5 bits;  conditional E-value: 0.08
                 EEBTTTTHHHHHHHHHTS--S---SSS---S-EEEEE..CCT---CCS...SSEEEE.T-EB--CHHHHHHHHHHHHHHHTSSSS--SS.......... CS
   Dynamin_N   4 vGsqSsGKSSvlnaLlgedilprgpnptTrrplelql..geeeeaseravkeelkek.ekkledfsevreeieketekiagankgiskk.......... 89 
                 +G    GKS++l  +  +++  +g ++  +  +  +l  g  e+   + +  +++e+  +++ d+++ + ++e++++   +  ++  k           
  KOO21696.1   9 LGPNGCGKSTLLKTISSAAVGGVGGELSNQIHVNPRLrfGMLEQTAVSGSARSVREEvMSRMADYQRAKAALEAAQASCVTGSESELKAldqassdfea 107
                 688889**********99998888877766655433333443333323333333333333333333333333333333221111111112333444666 PP

                 .....................................-EEEEEEETTS-SEEEEE---B-SSSGTTSHHHHHHH CS
   Dynamin_N  90 .....................................villkilsllvkgltlvDlPGldsvnkrdqelvkeyi 126
                                                       i l  l l +++l ++D P  +  ++ + +++ eyi
  KOO21696.1 108 aggytverrvslvlsglgfeldefdkpcssfsggwqmRIGLARLLLSEPELLIMDEPTNHLDAAAR-RWLAEYI 180
                 666666666666666666666666666666666666666666666666666666666433333333.5666666 PP

  == domain 2  score: 6.2 bits;  conditional E-value: 0.023
                 EEEEEBTTTTHHHHHHHHHTS CS
   Dynamin_N   1 iavvGsqSsGKSSvlnaLlge 21 
                 i++ G   +GKS++l aL g 
  KOO21696.1 299 IILRGPNGAGKSTLLKALSGT 319
                 56678899**********996 PP

>> AAA_28  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.0   0.1    0.0038       1.6       4      23 ..       8      27 ..       5      93 .. 0.67
   2 ?   11.9   0.0   0.00048       0.2       1      22 [.     298     319 ..     298     363 .. 0.81

  Alignments for each domain:
  == domain 1  score: 9.0 bits;  conditional E-value: 0.0038
      AAA_28  4 itGgestGKTtlleaLaarg 23
                ++G+ ++GK+tll+ +++  
  KOO21696.1  8 LLGPNGCGKSTLLKTISSAA 27
                79************999653 PP

  == domain 2  score: 11.9 bits;  conditional E-value: 0.00048
      AAA_28   1 kivitGgestGKTtlleaLaar 22 
                 +i++ G+ ++GK+tll+aL+ +
  KOO21696.1 298 RIILRGPNGAGKSTLLKALSGT 319
                 799****************943 PP

>> dNK  Deoxynucleoside kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.1   0.2      0.17        72       5      21 ..      10      26 ..       7      39 .. 0.85
   2 ?    6.9   0.0     0.012       5.1       1      23 [.     299     321 ..     299     332 .. 0.84

  Alignments for each domain:
  == domain 1  score: 3.1 bits;  conditional E-value: 0.17
                ESTTSSHHHHHHHHHCC CS
         dNK  5 GnIgaGKstlvklLskk 21
                G+ g+GKstl+k++s +
  KOO21696.1 10 GPNGCGKSTLLKTISSA 26
                888*********98865 PP

  == domain 2  score: 6.9 bits;  conditional E-value: 0.012
                 EEEEESTTSSHHHHHHHHHCCST CS
         dNK   1 ivveGnIgaGKstlvklLskklg 23 
                 i + G+ gaGKstl+k Ls +l+
  KOO21696.1 299 IILRGPNGAGKSTLLKALSGTLP 321
                 6678999***********98876 PP

>> AAA_7  P-loop containing dynein motor region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.9   0.0      0.16        68      38      54 ..       8      24 ..       2      29 .. 0.83
   2 ?    7.0   0.0    0.0088       3.7      28      57 ..     291     320 ..     287     325 .. 0.85

  Alignments for each domain:
  == domain 1  score: 2.9 bits;  conditional E-value: 0.16
       AAA_7 38 lvGptGtGKtviikdll 54
                l Gp G+GK++++k++ 
  KOO21696.1  8 LLGPNGCGKSTLLKTIS 24
                79**********99865 PP

  == domain 2  score: 7.0 bits;  conditional E-value: 0.0088
       AAA_7  28 lllknkkpvllvGptGtGKtviikdllkkl 57 
                 + +++++ ++l Gp G GK++++k l  +l
  KOO21696.1 291 MEVRRGQRIILRGPNGAGKSTLLKALSGTL 320
                 5678999***************99887666 PP

>> ATPase_2  ATPase domain predominantly from Archaea
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.7   0.0    0.0073       3.1      26      40 ..       9      23 ..       2      28 .. 0.86
   2 ?    2.7   0.0      0.25     1e+02      24      39 ..     300     315 ..     286     321 .. 0.83

  Alignments for each domain:
  == domain 1  score: 7.7 bits;  conditional E-value: 0.0073
    ATPase_2 26 YGpegsGKtaLlkei 40
                 Gp g+GK++Llk i
  KOO21696.1  9 LGPNGCGKSTLLKTI 23
                6************87 PP

  == domain 2  score: 2.7 bits;  conditional E-value: 0.25
    ATPase_2  24 fiYGpegsGKtaLlke 39 
                  + Gp g GK++Llk 
  KOO21696.1 300 ILRGPNGAGKSTLLKA 315
                 566***********96 PP

>> MutS_V  MutS domain V
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.8   0.1      0.13        52       3      19 ..       8      24 ..       6      33 .. 0.84
   2 ?    6.7   0.0     0.016       6.7       2      18 ..     300     316 ..     299     327 .. 0.86

  Alignments for each domain:
  == domain 1  score: 3.8 bits;  conditional E-value: 0.13
                EE-STTSSHHHHHHHHH CS
      MutS_V  3 itGpnmaGkstylrqva 19
                + Gpn  Gkst+l+ ++
  KOO21696.1  8 LLGPNGCGKSTLLKTIS 24
                56***********9886 PP

  == domain 2  score: 6.7 bits;  conditional E-value: 0.016
                 EEE-STTSSHHHHHHHH CS
      MutS_V   2 litGpnmaGkstylrqv 18 
                 ++ Gpn aGkst+l+  
  KOO21696.1 300 ILRGPNGAGKSTLLKAL 316
                 899***********986 PP

>> Viral_helicase1  Viral (Superfamily 1) RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.8   0.1     0.023       9.8       8      20 ..      13      25 ..       8      44 .. 0.87
   2 ?    3.1   0.0      0.16        67       5      24 ..     303     321 ..     299     347 .. 0.76

  Alignments for each domain:
  == domain 1  score: 5.8 bits;  conditional E-value: 0.023
  Viral_helicase1  8 GcGKStlirkllr 20
                     GcGKStl++++ +
       KOO21696.1 13 GCGKSTLLKTISS 25
                     ********99865 PP

  == domain 2  score: 3.1 bits;  conditional E-value: 0.16
  Viral_helicase1   5 GvpGcGKStlirkllrtsli 24 
                      G  G+GKStl++ l  t l 
       KOO21696.1 303 GPNGAGKSTLLKALSGT-LP 321
                      667*********99877.44 PP

>> Fibrillin_U_N  Fibrillin 1 unique N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.1   0.1       2.1   8.8e+02       8      15 ..       8      15 ..       6      18 .. 0.85
   2 ?   10.1   0.2    0.0016      0.67       1      15 [.     294     308 ..     294     311 .. 0.91

  Alignments for each domain:
  == domain 1  score: 0.1 bits;  conditional E-value: 2.1
  Fibrillin_U_N  8 LRGPnvCG 15
                   L GPn CG
     KOO21696.1  8 LLGPNGCG 15
                   67*****9 PP

  == domain 2  score: 10.1 bits;  conditional E-value: 0.0016
  Fibrillin_U_N   1 RRGqqDvLRGPnvCG 15 
                    RRGq  +LRGPn  G
     KOO21696.1 294 RRGQRIILRGPNGAG 308
                    9***********877 PP

>> cobW  CobW/HypB/UreG, nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.1   0.4      0.15        64       5      21 ..       8      24 ..       6      32 .. 0.85
   2 ?   -0.7   0.0       2.3   9.5e+02      39      64 ..     190     215 ..     185     241 .. 0.85
   3 ?    7.5   0.0    0.0067       2.8       3      21 ..     299     317 ..     297     344 .. 0.84

  Alignments for each domain:
  == domain 1  score: 3.1 bits;  conditional E-value: 0.15
                EEESTTCCHHHHHHHHH CS
        cobW  5 ltGflGsGKTtLlnhll 21
                l G+ G GK+tLl+++ 
  KOO21696.1  8 LLGPNGCGKSTLLKTIS 24
                67999********9986 PP

  == domain 2  score: -0.7 bits;  conditional E-value: 2.3
                 CHCCCCCCHCCCT.EEEETTTTECCH CS
        cobW  39 vsiDaellretgveivelenGciCct 64 
                 vs+D+++++ ++++i ++  G +C  
  KOO21696.1 190 VSHDEAFVSVACNSIADVDGGRLCLY 215
                 789********999*********965 PP

  == domain 3  score: 7.5 bits;  conditional E-value: 0.0067
                 EEEEESTTCCHHHHHHHHH CS
        cobW   3 tvltGflGsGKTtLlnhll 21 
                 ++l G+ G+GK+tLl++l 
  KOO21696.1 299 IILRGPNGAGKSTLLKALS 317
                 6899***********9875 PP

>> Adeno_IVa2  Adenovirus IVa2 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.9   0.2     0.046        19      93     110 ..       9      26 ..       7      31 .. 0.85
   2 ?    3.9   0.1     0.045        19      91     107 ..     300     316 ..     286     321 .. 0.90

  Alignments for each domain:
  == domain 1  score: 3.9 bits;  conditional E-value: 0.046
  Adeno_IVa2  93 yGPtGsGksqllrnliss 110
                  GP G+Gks ll+++ s+
  KOO21696.1   9 LGPNGCGKSTLLKTISSA 26 
                 69**********987665 PP

  == domain 2  score: 3.9 bits;  conditional E-value: 0.045
  Adeno_IVa2  91 viyGPtGsGksqllrnl 107
                 ++ GP G+Gks ll++l
  KOO21696.1 300 ILRGPNGAGKSTLLKAL 316
                 678************98 PP

>> FUSC  Fusaric acid resistance protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.4   0.1      0.22        90     580     651 ..      53     129 ..      40     134 .. 0.69
   2 ?    4.4  15.6     0.027        11     163     295 ..     478     614 ..     460     644 .. 0.74

  Alignments for each domain:
  == domain 1  score: 1.4 bits;  conditional E-value: 0.22
        FUSC 580 a.laaearaaldavlaala....frapaaarsarrlrapaaalraldaalaalaaseatsalrralaaLvrlrlall 651
                 + ++++ar   ++v++++a     +a  +a++a++ + ++  l+ald+a   ++a +  +  rr+   L +l ++l+
  KOO21696.1  53 TaVSGSARSVREEVMSRMAdyqrAKAALEAAQASCVTGSESELKALDQASSDFEAAGGYTVERRVSLVLSGLGFELD 129
                 24556666666666666665446667777777777778888888888888888888777777888777777777765 PP

  == domain 2  score: 4.4 bits;  conditional E-value: 0.027
        FUSC 163 rallrdalalaaaalageegaeareaararlaadilalealrsqaayesprirararalrrllsrmlallallsslarllarlraeeaaavpelaalla 261
                 +++lr+  + a+++ +g+++      ++arl ++i + e++++++ +e  +   +++++r+l ++  al a l++ + ++++l a++ +a    +a+l+
  KOO21696.1 478 AKRLREEQRNAQKLQNGAPK------KLARLEEQIGEAETAIAALDAEMMKAGSDVGRVRELDAQRGALQAKLDGWYAEMEELEAQRLRA----QAMLE 566
                 55555555555555555554......5669******************************************************988877....89*** PP

        FUSC 262 elaaleaaaaaealeaalaalrarlralrrale...............a 295
                 e+ + ++++  e++ea+++al+ +++++++ le               a
  KOO21696.1 567 EVTK-KEREEFETIEADVEALEVAAAKAEATLEaaknakprlpqmellA 614
                 **99.888999**************999999995444433222222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (646 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1505  (0.0839422); expected 358.6 (0.02)
Passed bias filter:                      759  (0.0423336); expected 358.6 (0.02)
Passed Vit filter:                       129  (0.00719505); expected 17.9 (0.001)
Passed Fwd filter:                        62  (0.00345808); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              43  [number of targets reported over threshold]
# CPU time: 0.91u 0.33s 00:00:01.24 Elapsed: 00:00:00.48
# Mc/sec: 4009.04
//
Query:       KOO21697.1  [L=180]
Description: hypothetical protein Ctob_001277 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      0.008   15.6   0.1      0.017   14.6   0.1    1.5  1  EF-hand_5  EF hand
  ------ inclusion threshold ------
       0.02   14.4   0.1      0.041   13.4   0.1    1.5  1  EF-hand_1  EF hand
      0.042   13.8   0.0       0.12   12.4   0.0    1.7  1  EF-hand_6  EF-hand domain


Domain annotation for each model (and alignments):
>> EF-hand_5  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.6   0.1   2.8e-06     0.017       3      22 ..      34      53 ..      32      57 .. 0.86

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 2.8e-06
                HHHHHH-SS-SSCE-HHHHH CS
   EF-hand_5  3 dtFqaiDlNgDGkIskeELk 22
                d+++ +D++gDG +   E +
  KOO21697.1 34 DALRVLDKDGDGEVESHEIE 53
                5699**********999975 PP

>> EF-hand_1  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.1   6.8e-06     0.041       4      22 ..      34      52 ..      33      55 .. 0.88

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 6.8e-06
                HHHHHHTTTSSSEEEHHHH CS
   EF-hand_1  4 eiFrefDkDgdGkIdfeEf 22
                ++ r++DkDgdG ++  E 
  KOO21697.1 34 DALRVLDKDGDGEVESHEI 52
                6889**********99996 PP

>> EF-hand_6  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0     2e-05      0.12       4      23 ..      34      53 ..      32      61 .. 0.86

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 2e-05
   EF-hand_6  4 eaFklfDkdgdGkidaeElr 23
                +a + +DkdgdG++  +E+ 
  KOO21697.1 34 DALRVLDKDGDGEVESHEIE 53
                67789*************95 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (180 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       280  (0.0156172); expected 358.6 (0.02)
Passed bias filter:                      263  (0.014669); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.39u 0.28s 00:00:00.67 Elapsed: 00:00:00.44
# Mc/sec: 1240.61
//
Query:       KOO21698.1  [L=51]
Description: hypothetical protein Ctob_001275 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.5e-06   26.6   0.0    4.6e-06   26.3   0.0    1.2  1  LRR_6     Leucine Rich repeat


Domain annotation for each model (and alignments):
>> LRR_6  Leucine Rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.3   0.0   2.6e-10   4.6e-06       5      24 .]       1      20 [.       1      20 [. 0.96

  Alignments for each domain:
  == domain 1  score: 26.3 bits;  conditional E-value: 2.6e-10
       LRR_6  5 LteLdLsgNdIgDeGaeaLa 24
                +teL+L++N Ig+eGa+a+a
  KOO21698.1  1 MTELNLRWNSIGGEGAIAIA 20
                69****************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (51 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       156  (0.00870099); expected 358.6 (0.02)
Passed bias filter:                      104  (0.00580066); expected 358.6 (0.02)
Passed Vit filter:                         5  (0.000278878); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.32u 0.22s 00:00:00.54 Elapsed: 00:00:00.37
# Mc/sec: 410.13
//
Query:       KOO21699.1  [L=436]
Description: hypothetical protein Ctob_001279 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    7.5e-14   51.5   0.1    4.4e-07   29.8   0.1    2.3  2  PAN_1     PAN domain
    3.3e-12   46.1   6.4      2e-07   30.8   0.4    2.8  2  PAN_4     PAN domain
     0.0028   17.7   2.5       0.12   12.5   0.2    2.4  2  PAN_2     PAN-like domain


Domain annotation for each model (and alignments):
>> PAN_1  PAN domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.8   0.1   7.3e-11   4.4e-07       9      57 ..      56     103 ..      53     121 .. 0.87
   2 !   19.3   0.0   1.3e-07    0.0008       5      61 ..     308     369 ..     305     387 .. 0.83

  Alignments for each domain:
  == domain 1  score: 29.8 bits;  conditional E-value: 7.3e-11
                 EEEESEEEEEE.ECSSHHHHHHHHHHSTTS--SEEEEETTTTEEEEEESS CS
       PAN_1   9 stlsgedkkti.tvdsaeeCaerCseekkfrCrsftfnnstkeCylksed 57 
                  ++ g+d+ +  +v++a +C+ +C+e+++  C++ft+ +++k+C lk + 
  KOO21699.1  56 MDFAGADIDSLyGVEDAVKCRIACEEHPR--CLAFTYVKTDKACWLKGQG 103
                 678999999999*****************..**************99764 PP

  == domain 2  score: 19.3 bits;  conditional E-value: 1.3e-07
                 EEEEEEEESEEEEEE.ECSSHHHHHHHHHHSTTS....--SEEEEETTTTEEEEEESSSSSC CS
       PAN_1   5 kipgstlsgedkkti.tvdsaeeCaerCseekkf....rCrsftfnnstkeCylksedktsl 61 
                  +++++l+g d+ +  ++ ++  C+ +C+    +     Cr+ t +++ + C lks+d+t++
  KOO21699.1 308 IFDDTELVGGDVHQLsHTHTVLACRDACASYVAPpaspPCRAWTLAKEAGHCWLKSKDATRQ 369
                 68899****9999999*************5555455568********************995 PP

>> PAN_4  PAN domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.8   0.4   3.3e-11     2e-07       2      51 .]      57     100 ..      56     100 .. 0.93
   2 !   17.3   1.1   5.7e-07    0.0034       2      51 .]     313     362 ..     312     362 .. 0.80

  Alignments for each domain:
  == domain 1  score: 30.8 bits;  conditional E-value: 3.3e-11
       PAN_4   2 dypGndlangevladspeaCcaaCaadsnCnawvyvkpavkgayarCwLK 51 
                 d+ G+d+++    + ++  C+ aC++ ++C a++yvk      ++ CwLK
  KOO21699.1  57 DFAGADIDSL-YGVEDAVKCRIACEEHPRCLAFTYVK-----TDKACWLK 100
                 899******5.5899**********************.....89*****9 PP

  == domain 2  score: 17.3 bits;  conditional E-value: 5.7e-07
       PAN_4   2 dypGndlangevladspeaCcaaCa......adsnCnawvyvkpavkgayarCwLK 51 
                 ++ G+d+ +    + +  aC++aCa      a + C+aw+  k     + ++CwLK
  KOO21699.1 313 ELVGGDVHQL-SHTHTVLACRDACAsyvappASPPCRAWTLAK-----EAGHCWLK 362
                 6778888884.5788999******94443334799********.....89*****9 PP

>> PAN_2  PAN-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.5   0.2     2e-05      0.12      29      60 ..      71     100 ..      56     104 .. 0.85
   2 !    4.8   0.2    0.0049        29      22      63 ..     320     365 ..     302     368 .. 0.73

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 2e-05
       PAN_2  29 tleeCkerClsnCsCtAYayadirggsgCliW 60 
                 ++ +C+ +C ++  C A++y++  + + C+++
  KOO21699.1  71 DAVKCRIACEEHPRCLAFTYVK--TDKACWLK 100
                 6679****************96..56999987 PP

  == domain 2  score: 4.8 bits;  conditional E-value: 0.0049
       PAN_2  22 asvdkevtleeCkerClsnCs......CtAYayadirggsgCliWtgd 63 
                 +++ +++t+ +C+++C s  +      C+A++ a+  ++  C+++ +d
  KOO21699.1 320 HQLSHTHTVLACRDACASYVAppasppCRAWTLAK--EAGHCWLKSKD 365
                 45556799999*****9865333334499999985..78999999887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (436 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       323  (0.0180155); expected 358.6 (0.02)
Passed bias filter:                      264  (0.0147247); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.48u 0.26s 00:00:00.74 Elapsed: 00:00:00.42
# Mc/sec: 3080.42
//
Query:       KOO21700.1  [L=317]
Description: elmo domain-containing protein a-like protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      1e-24   87.6   0.0    1.6e-24   87.0   0.0    1.4  1  ELMO_CED12  ELMO/CED-12 family
  ------ inclusion threshold ------
       0.15   11.7   0.0       0.26   10.9   0.0    1.3  1  MAAL_N      Methylaspartate ammonia-lyase N-terminus


Domain annotation for each model (and alignments):
>> ELMO_CED12  ELMO/CED-12 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   87.0   0.0   1.8e-28   1.6e-24       2     173 ..       8     219 ..       7     223 .. 0.73

  Alignments for each domain:
  == domain 1  score: 87.0 bits;  conditional E-value: 1.8e-28
  ELMO_CED12   2 llekkrktpldlenpeherlLkelwsalypdepeinstksrisekWkklGFqgedPatDFrgtGlLgLenLlyfaenheeefqkllsessrrpseeeyp 100
                 +l++  + p++++n+eh+ lL+++ws+++p + ++       se+Wk+ GFqg dP+tD+rgtG+++L++L  f  + ++e+  +l   s++     +p
  KOO21700.1   8 RLQASVTLPFNEANEEHMLLLSTIWSQAFPWRSFE-----LPSERWKEAGFQGRDPRTDLRGTGVISLRHLQSFLSTRKDELAGVLPAESSSDPLRAFP 101
                 57888999*********************666555.....8****************************************999998777777778*** PP

  ELMO_CED12 101 favasinvtslllelleiektdeede.eeqkdklkt..............................................nntkllssnlnafeelf 152
                 +++asinv+++ll++l+           +      +                                              +        + ++  ++
  KOO21700.1 102 LSIASINVSAMLLSHLQLAPHLTI-AfLP------NggrkteasaatlagflsmgqpptegsteavqeggaaaidvelgdeaQLAARIARLEYVLAAMH 193
                 ************999877322221.1111......1112223445566666666666666666666666666666666666666666666666666666 PP

  ELMO_CED12 153 svlfllfdslWke....kka.timdf 173
                   l++++ ++W      +++ tim f
  KOO21700.1 194 ERLLMHLAATWGTmlreDPQlTIMSF 219
                 66666666666665555555555555 PP

>> MAAL_N  Methylaspartate ammonia-lyase N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   2.9e-05      0.26      26      82 ..     139     195 ..     133     212 .. 0.88

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 2.9e-05
      MAAL_N  26 gakedgfayegepvtpgFksvrqagesisvllvledgqvavGdcaavqysgaggRdp 82 
                  a+  gf+  g+p t+g ++ +q+g +  + ++l d++     +a ++y  a+  + 
  KOO21700.1 139 AATLAGFLSMGQPPTEGSTEAVQEGGAAAIDVELGDEAQLAARIARLEYVLAAMHER 195
                 57788********************************99999999999987776655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (317 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       329  (0.0183502); expected 358.6 (0.02)
Passed bias filter:                      274  (0.0152825); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.44u 0.23s 00:00:00.67 Elapsed: 00:00:00.40
# Mc/sec: 2383.96
//
Query:       KOO21701.1  [L=423]
Description: hypothetical protein Ctob_001723 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.6e-16   58.6   0.0     0.0021   17.5   0.0    4.5  4  EF-hand_1  EF hand
    4.7e-14   51.0   0.0      0.043   13.7   0.0    4.6  4  EF-hand_6  EF-hand domain
    2.1e-11   44.1   1.3    0.00032   21.1   0.0    3.3  3  EF-hand_7  EF-hand domain pair
      9e-10   37.6   2.7       0.28   10.8   0.0    4.6  4  EF-hand_5  EF hand
  ------ inclusion threshold ------
      0.022   14.6   0.4          8    6.4   0.1    3.7  4  EF-hand_8  EF-hand domain pair


Domain annotation for each model (and alignments):
>> EF-hand_1  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.0   4.2e-06     0.015       6      28 ..     161     183 ..     158     184 .. 0.90
   2 !   17.5   0.0   5.9e-07    0.0021       2      23 ..     200     221 ..     199     223 .. 0.91
   3 !   11.6   0.0   4.4e-05      0.16       8      28 ..     256     276 ..     252     277 .. 0.89
   4 !    9.2   0.0   0.00025      0.91       2      19 ..     294     311 ..     293     313 .. 0.85

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 4.2e-06
                 HHHHTTTSSSEEEHHHHHHHHHH CS
   EF-hand_1   6 FrefDkDgdGkIdfeEfkellkk 28 
                 F++ D+Dg+Gk++++E +e++k+
  KOO21701.1 161 FAVCDVDGNGKLSRKEAIECIKA 183
                 999*************9999886 PP

  == domain 2  score: 17.5 bits;  conditional E-value: 5.9e-07
                 HHHHHHHHTTTSSSEEEHHHHH CS
   EF-hand_1   2 lkeiFrefDkDgdGkIdfeEfk 23 
                   +++r  D+Dg+G+I++ E++
  KOO21701.1 200 AHRMWRQWDVDGSGFIERHELL 221
                 679*****************97 PP

  == domain 3  score: 11.6 bits;  conditional E-value: 4.4e-05
                 HHTTTSSSEEEHHHHHHHHHH CS
   EF-hand_1   8 efDkDgdGkIdfeEfkellkk 28 
                  fD D++G +++eE +++l k
  KOO21701.1 256 FFDEDHSGSLEREEVVRALIK 276
                 69***************9976 PP

  == domain 4  score: 9.2 bits;  conditional E-value: 0.00025
                 HHHHHHHHTTTSSSEEEH CS
   EF-hand_1   2 lkeiFrefDkDgdGkIdf 19 
                 ++ i+ +fD+Dg+G I++
  KOO21701.1 294 VQAIWPIFDTDGSGSIER 311
                 5778889********985 PP

>> EF-hand_6  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.3   0.0   3.4e-05      0.12       6      27 ..     161     182 ..     159     189 .. 0.91
   2 !   13.7   0.0   1.2e-05     0.043       3      23 ..     201     221 ..     199     223 .. 0.88
   3 !   13.1   0.0     2e-05     0.071       6      28 ..     254     276 ..     252     281 .. 0.86
   4 !    5.7   0.0    0.0047        17       8      19 ..     300     311 ..     300     318 .. 0.88

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 3.4e-05
   EF-hand_6   6 FklfDkdgdGkidaeElrkalr 27 
                 F   D+dg+Gk++++E + +++
  KOO21701.1 161 FAVCDVDGNGKLSRKEAIECIK 182
                 9999************988877 PP

  == domain 2  score: 13.7 bits;  conditional E-value: 1.2e-05
   EF-hand_6   3 reaFklfDkdgdGkidaeElr 23 
                 ++ ++++D+dg+G+i ++El 
  KOO21701.1 201 HRMWRQWDVDGSGFIERHELL 221
                 67899**************97 PP

  == domain 3  score: 13.1 bits;  conditional E-value: 2e-05
   EF-hand_6   6 FklfDkdgdGkidaeElrkalrk 28 
                 ++ fD d++G++ +eE+++al k
  KOO21701.1 254 YDFFDEDHSGSLEREEVVRALIK 276
                 578**************999975 PP

  == domain 4  score: 5.7 bits;  conditional E-value: 0.0047
   EF-hand_6   8 lfDkdgdGkida 19 
                 +fD+dg+G+i +
  KOO21701.1 300 IFDTDGSGSIER 311
                 59********87 PP

>> EF-hand_7  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.0   2.1e-06    0.0074       8      67 ..     161     221 ..     158     222 .. 0.82
   2 !   19.1   0.2   3.7e-07    0.0013       3      65 ..     199     269 ..     197     269 .. 0.83
   3 !   21.1   0.0   8.9e-08   0.00032       9      63 ..     255     311 ..     250     313 .. 0.71

  Alignments for each domain:
  == domain 1  score: 16.7 bits;  conditional E-value: 2.1e-06
   EF-hand_7   8 FkelDtdgdgyldkeellrllrkifqga.....gegsklsdeelellfkefDtdkdGvisfdEFl 67 
                 F   D+dg+g+l++ e   ++++i+++        +  l+d e  ++++ +D d++G i + E+l
  KOO21701.1 161 FAVCDVDGNGKLSRKE---AIECIKAQYacdvaQLDAALTD-EAHRMWRQWDVDGSGFIERHELL 221
                 7889************...5666554446778788888775.889999************99976 PP

  == domain 2  score: 19.1 bits;  conditional E-value: 3.7e-07
   EF-hand_7   3 klkeaFkelDtdgdgyldkeellr...............llrkifqgagegsklsdeelellfkefDtdkdGvisfdE 65 
                 + ++++++ D+dg+g++++ ell                 +r      g++ +++ ++  ++ + fD d++G++ ++E
  KOO21701.1 199 EAHRMWRQWDVDGSGFIERHELLAspnglalsvprlfppTVR------GTMPNMRTDK-SAWYDFFDEDHSGSLEREE 269
                 67999****************887677777766666666666......8888888766.8****************98 PP

  == domain 3  score: 21.1 bits;  conditional E-value: 8.9e-08
   EF-hand_7   9 kelDtdgdgyldkeellr.llrkifqgagegsklsdee.......lellfkefDtdkdGvisf 63 
                 + +D d++g+l++ee+ r l++ +  ++  +      +       +++++  fDtd++G+i +
  KOO21701.1 255 DFFDEDHSGSLEREEVVRaLIKTLGLST-NQA-----KvaemrgtVQAIWPIFDTDGSGSIER 311
                 569************6662555544332.222.....12234566***************986 PP

>> EF-hand_5  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.8   0.0   7.7e-05      0.28       4      20 ..     160     176 ..     158     181 .. 0.88
   2 !   10.7   0.0   8.3e-05       0.3       9      21 ..     208     220 ..     205     223 .. 0.88
   3 !    6.1   0.1    0.0023       8.1       7      20 ..     256     269 ..     255     275 .. 0.88
   4 !    6.6   0.2    0.0016       5.8       8      18 ..     301     311 ..     300     312 .. 0.90

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 7.7e-05
                 HHHHH-SS-SSCE-HHH CS
   EF-hand_5   4 tFqaiDlNgDGkIskeE 20 
                 +F   D++g Gk+s+ E
  KOO21701.1 160 WFAVCDVDGNGKLSRKE 176
                 88999**********99 PP

  == domain 2  score: 10.7 bits;  conditional E-value: 8.3e-05
                 -SS-SSCE-HHHH CS
   EF-hand_5   9 DlNgDGkIskeEL 21 
                 D++g+G+I + EL
  KOO21701.1 208 DVDGSGFIERHEL 220
                 9***********9 PP

  == domain 3  score: 6.1 bits;  conditional E-value: 0.0023
                 HH-SS-SSCE-HHH CS
   EF-hand_5   7 aiDlNgDGkIskeE 20 
                  +D +++G + +eE
  KOO21701.1 256 FFDEDHSGSLEREE 269
                 69***********9 PP

  == domain 4  score: 6.6 bits;  conditional E-value: 0.0016
                 H-SS-SSCE-H CS
   EF-hand_5   8 iDlNgDGkIsk 18 
                 +D++g+G I +
  KOO21701.1 301 FDTDGSGSIER 311
                 9********76 PP

>> EF-hand_8  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.7   0.0     0.031   1.1e+02      36      51 ..     165     180 ..     161     184 .. 0.81
   2 ?   -3.2   0.0       2.2   7.9e+03       2      10 ..     212     220 ..     204     222 .. 0.68
   3 ?    2.8   0.0      0.03   1.1e+02      34      50 ..     256     272 ..     255     277 .. 0.85
   4 ?    6.4   0.1    0.0022         8       1      43 [.     261     309 ..     261     311 .. 0.74

  Alignments for each domain:
  == domain 1  score: 2.7 bits;  conditional E-value: 0.031
   EF-hand_8  36 DtdgdGkisfeEFcvl 51 
                 D dg+Gk+s +E +++
  KOO21701.1 165 DVDGNGKLSRKEAIEC 180
                 88********996665 PP

  == domain 2  score: -3.2 bits;  conditional E-value: 2.2
   EF-hand_8   2 kgkItreel 10 
                 +g I r+el
  KOO21701.1 212 SGFIERHEL 220
                 466666666 PP

  == domain 3  score: 2.8 bits;  conditional E-value: 0.03
   EF-hand_8  34 efDtdgdGkisfeEFcv 50 
                  fD+d++G +  eE + 
  KOO21701.1 256 FFDEDHSGSLEREEVVR 272
                 69********9999765 PP

  == domain 4  score: 6.4 bits;  conditional E-value: 0.0022
   EF-hand_8   1 ekgkItreelrril.rilglkk...glseee..vdilfrefDtdgdGki 43 
                 ++g++ ree +r+l ++lgl     ++ e    v+++   fDtdg+G i
  KOO21701.1 261 HSGSLEREEVVRALiKTLGLSTnqaKVAEMRgtVQAIWPIFDTDGSGSI 309
                 5788999999999999999997766555533336777778899999987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (423 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       522  (0.0291148); expected 358.6 (0.02)
Passed bias filter:                      478  (0.0266607); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.47u 0.27s 00:00:00.74 Elapsed: 00:00:00.40
# Mc/sec: 3163.84
//
Query:       KOO21702.1  [L=96]
Description: hypothetical protein Ctob_001725 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    0.00022   21.1   0.6    0.00022   21.1   0.6    1.1  1  2Fe-2S_thioredx  Thioredoxin-like [2Fe-2S] ferredoxin


Domain annotation for each model (and alignments):
>> 2Fe-2S_thioredx  Thioredoxin-like [2Fe-2S] ferredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.1   0.6   1.2e-08   0.00022      66     128 ..       4      66 ..       1      91 [. 0.82

  Alignments for each domain:
  == domain 1  score: 21.1 bits;  conditional E-value: 1.2e-08
                      EEEEEE-SHHHHTTTHHHHHHHHHHHHT--TT-B-TTSSEEEEEES--S-GGGSSEEEESSSS CS
  2Fe-2S_thioredx  66 yviqvCtttpCalrgseeilealekklgikagettadgkftleeveClGaCanaPvvqindev 128
                      ++++vC++  C+ +g+ + l+ l++ +g + +       +t +e  C+  C ++P v i++e 
       KOO21702.1   4 VRVEVCQNKYCKKKGAAATLKLLQELVGDRDDVQVVVADMTHTEHGCFDECTMGPNVRIGGEP 66 
                      579*************************999888899999*******************8843 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (96 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       505  (0.0281667); expected 358.6 (0.02)
Passed bias filter:                      344  (0.0191868); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.24s 00:00:00.60 Elapsed: 00:00:00.40
# Mc/sec: 725.61
//
Query:       KOO21703.1  [L=396]
Description: flap endonuclease 1-like protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    5.3e-30  103.9   0.0    9.8e-30  103.0   0.0    1.5  1  XPG_N         XPG N-terminal domain
    7.2e-27   93.6   0.4    1.4e-26   92.6   0.0    1.7  2  XPG_I         XPG I-region
    7.3e-07   29.7   0.0    3.2e-06   27.6   0.0    2.1  2  5_3_exonuc    5'-3' exonuclease, C-terminal SAM fold
    0.00071   20.1   0.0     0.0033   18.0   0.0    2.2  1  HHH_5         Helix-hairpin-helix domain
  ------ inclusion threshold ------
      0.019   14.9   0.0      0.086   12.7   0.0    1.8  1  5_3_exonuc_N  5'-3' exonuclease, N-terminal resolvase-like do
       0.21   10.4   0.5       0.31    9.9   0.5    1.1  1  DUF4554       Domain of unknown function (DUF4554)


Domain annotation for each model (and alignments):
>> XPG_N  XPG N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  103.0   0.0   3.3e-33   9.8e-30       1     100 [.       1     112 [.       1     113 [. 0.93

  Alignments for each domain:
  == domain 1  score: 103.0 bits;  conditional E-value: 3.3e-33
                 X--TTHHHHHHHH-..GEEEEEGGGGTTEEEEEEHHHHHHHHHHHSE.ETTEE-BS..........-HHHHHHHHHHHHHHHTTEEEEEEE--S--GGG CS
       XPG_N   1 MGikgLlkllkeva..airsvsiealegkklaiDaslwlyrfliavreqlgnalen..........tshlmglfsrllrlldfgikPifVFdgkapdlk 87 
                 MGi+gL kl+++ a  ai++  + +++++k+aiDas+++y+fliavr+ ++    +          tshl+g+++r++++l+ gikP+fVFdgkap++k
  KOO21703.1   1 MGIQGLTKLISDNApgAIKEGTVDKYFNRKIAIDASMSIYQFLIAVRSMDAAGGGSmqltndagevTSHLTGMLYRTIKMLEAGIKPVFVFDGKAPTMK 99 
                 ***********************************************99876544445566************************************** PP

                 HHHHHHHHHHHHH CS
       XPG_N  88 keelekrserrqe 100
                  +el+kr+er++ 
  KOO21703.1 100 GGELAKRKERQKA 112
                 **********975 PP

>> XPG_I  XPG I-region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.1       3.7   1.1e+04      14      25 ..     113     124 ..     106     131 .. 0.83
   2 !   92.6   0.0   4.7e-30   1.4e-26       1      94 []     155     242 ..     155     242 .. 0.96

  Alignments for each domain:
  == domain 1  score: -3.2 bits;  conditional E-value: 3.7
                 HHHHHHHHHHTT CS
       XPG_I  14 AEAqcayLqkkg 25 
                 AE ++a Lq++g
  KOO21703.1 113 AEDELAKLQQEG 124
                 888999999987 PP

  == domain 2  score: 92.6 bits;  conditional E-value: 4.7e-30
                 HHHT--EEE-SS-HHHHHHHHHHTTSSSEEE-SSSHHHHTT-SEEEESTT.ECECTT..EEECEEEEEEHHHHHHHHT--HHHHHHHHHHHCET CS
       XPG_I   1 klmgipyvvApgEAEAqcayLqkkglvdaviseDsDlllFGapkvlrnlskkkskkkkekekkkvevidlekvlkelgltreqlidlaillgcD 94 
                 +lmg+p+++Ap+EAEA ca+L+k+g+v a+ +eD+D+l+FG+p +lr+l+   ++++    k ++ +++le +l  l lt++q+idl+il+gcD
  KOO21703.1 155 RLMGVPVLDAPCEAEATCAALAKAGKVFATGTEDADALTFGTPILLRHLN--AAESR----KLPIVEVNLEAALAGLHLTHAQFIDLCILCGCD 242
                 69***********************************************9..65666....889*****************************9 PP

>> 5_3_exonuc  5'-3' exonuclease, C-terminal SAM fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.1       1.4     4e+03      55      76 ..     135     156 ..      99     170 .. 0.60
   2 !   27.6   0.0   1.1e-09   3.2e-06       4      50 ..     230     274 ..     227     298 .. 0.84

  Alignments for each domain:
  == domain 1  score: -1.5 bits;  conditional E-value: 1.4
  5_3_exonuc  55 klkekLeenkeearlskkLati 76 
                 ++k+ +++++e+ +  k+L ++
  KOO21703.1 135 QQKRLVRASREQSEEVKQLLRL 156
                 3333344455555555555555 PP

  == domain 2  score: 27.6 bits;  conditional E-value: 1.1e-09
  5_3_exonuc   4 eqiidlkaLvGDssDnipGvpgiGektAakLlkeygsleeilenlde 50 
                 +q+idl  L+G   D    ++giG+ tA kL++e+gs+eeil++ld+
  KOO21703.1 230 AQFIDLCILCG--CDYTDSIKGIGPVTALKLVREHGSIEEILKKLDK 274
                 69999999999..4555567889*********************996 PP

>> HHH_5  Helix-hairpin-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.0   0.0   1.1e-06    0.0033       6      35 ..     246     275 ..     242     279 .. 0.82

  Alignments for each domain:
  == domain 1  score: 18.0 bits;  conditional E-value: 1.1e-06
                 TSTT--HHHHHHHHTTT--SHHHHHHS.-HH CS
       HHH_5   6 svsGiGpktAlallsaGiesvedlaaa.dve 35 
                 s++GiGp+tAl+l++   +s+e+++++ d++
  KOO21703.1 246 SIKGIGPVTALKLVRE-HGSIEEILKKlDKD 275
                 8**************9.89999986532655 PP

>> 5_3_exonuc_N  5'-3' exonuclease, N-terminal resolvase-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   2.9e-05     0.086       5     116 ..      33     179 ..      30     194 .. 0.77

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 2.9e-05
  5_3_exonuc_N   5 iDgsslifRayyal............lttsdgeptnavygflnmllklleeekpthlavvfDakkktfRhelypeYKanR................. 72 
                   iD+s  i++   a+            lt+  ge t+ + g+l   +k+le     + ++vfD k++t++   +++ K+                   
    KOO21703.1  33 IDASMSIYQFLIAVrsmdaagggsmqLTNDAGEVTSHLTGMLYRTIKMLEAGI--KPVFVFDGKAPTMKGGELAKRKERQkaaedelaklqqegsga 127
                   66666666666666666666777767888999999999999999999998633..469****98999999988885554488888899999999999 PP

  5_3_exonuc_N  73 .........eetpeelkeqlplikevlealgikvlevegyEADDvigtlakra 116
                            +   ++ +eq + +k++l+ +g++vl ++ +EA    ++lak+ 
    KOO21703.1 128 taedierqqKRLVRASREQSEEVKQLLRLMGVPVLDAP-CEAEATCAALAKAG 179
                   99999888788889999******************765.79988888888773 PP

>> DUF4554  Domain of unknown function (DUF4554)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   0.5    0.0001      0.31     343     423 ..     102     182 ..      91     207 .. 0.80

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.0001
     DUF4554 343 ltpekkdsaqntedahensslellaetsgqae..nkrlkrgslrqgveetralrsaralspseaaarraeptaasltakgaek 423
                   +++k++++++ed   + + e    t+++ e   krl r+s +q+ e  + lr    +     a+++ae+t a+l+  g+  
  KOO21703.1 102 ELAKRKERQKAAEDELAKLQQEGSGATAEDIErqQKRLVRASREQSEEVKQLLRLMGVP--VLDAPCEAEATCAALAKAGKVF 182
                 566788999999999999988888888887663379******99999999999988877..6789***********9998544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (396 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1135  (0.0633053); expected 358.6 (0.02)
Passed bias filter:                      731  (0.0407719); expected 358.6 (0.02)
Passed Vit filter:                        63  (0.00351386); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.57u 0.26s 00:00:00.83 Elapsed: 00:00:00.44
# Mc/sec: 2697.91
//
Query:       KOO21704.1  [L=363]
Description: chaperone protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.9e-26   91.4   5.1    4.3e-26   90.8   5.1    1.3  1  DnaJ            DnaJ domain
  ------ inclusion threshold ------
      0.086   13.4  13.7        0.2   12.3  13.7    1.7  1  Forkhead_N      Forkhead N-terminal region


Domain annotation for each model (and alignments):
>> DnaJ  DnaJ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   90.8   5.1   4.8e-30   4.3e-26       1      63 []       8      72 ..       8      72 .. 0.97

  Alignments for each domain:
  == domain 1  score: 90.8 bits;  conditional E-value: 4.8e-30
                HHHHHHTSSTTG-HHHHHHHHHHHHHHHSTTTSCCHH..HHHHHHHHHHHHHHHHTSHHHHHHHH CS
        DnaJ  1 dyYeiLgvskdasedeIkkaYrklalkyHPDknpkdp..eaeekFkeineAyevLsdpekRkqYD 63
                dyY+iLgv+kdase+eI kaY+kla+kyHPDknp++    aee+Fk+++eAyevLs++ekR+ YD
  KOO21704.1  8 DYYAILGVKKDASEQEINKAYKKLAIKYHPDKNPGEHkeLAEENFKKVSEAYEVLSNKEKRQTYD 72
                8********************************8877779************************9 PP

>> Forkhead_N  Forkhead N-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3  13.7   2.2e-05       0.2      36      96 ..     132     192 ..     108     237 .. 0.62

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 2.2e-05
                 XXXXXXXXXX....XXXXX.XXXXXXXXX.XXXXXX.XXXXXXXXXXXXXXX..XXXXXXXX CS
  Forkhead_N  36 ssanmngyagaaamngmssssmtgmssgyasagspl.gmmgmssmssslspsgtmgamgsap 96 
                 s+a+ +g+ g+++m gm + +m gm++ ++   +++ gm+gm +m+ + ++ g+ g mg+ +
  KOO21704.1 132 STAGGPGMGGMGGMHGMHA-GMGGMGGLPPEFAAMMgGMGGMRGMGGMGGMGGKGGGMGGGR 192
                 2233333333334444443.455555555554455555566666665555555555555542 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (363 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       680  (0.0379274); expected 358.6 (0.02)
Passed bias filter:                      485  (0.0270511); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.50u 0.26s 00:00:00.76 Elapsed: 00:00:00.42
# Mc/sec: 2609.32
//
Query:       KOO21705.1  [L=478]
Description: nicotinamide phosphoribosyltransferase-like protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.7e-58  198.1   0.0    2.1e-58  197.8   0.0    1.1  1  NAPRTase  Nicotinate phosphoribosyltransferase (NAPRTase) fam
    4.4e-39  132.9   0.1    1.3e-38  131.3   0.1    1.9  2  DUF5598   Domain of unknown function (DUF5598)


Domain annotation for each model (and alignments):
>> NAPRTase  Nicotinate phosphoribosyltransferase (NAPRTase) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  197.8   0.0   2.4e-62   2.1e-58       2     239 ..     175     457 ..     174     459 .. 0.92

  Alignments for each domain:
  == domain 1  score: 197.8 bits;  conditional E-value: 2.4e-62
                 SEEE-TSTTSSSHHHHHHHHHHHHHHHTTTEEEESBHHH.......................HHHHT--B--HHHHHHHHHHHHHHCHHHHHCCHHH.. CS
    NAPRTase   2 klhDFGtRrrsslesqeivvkalkkahlvnflGtdnvla.......................aakysikaaetsahealgkeqelsafrnnlkqfqk.. 75 
                 +lhDFG+R++ss es++i+++    ahlv+f+Gtd+++a                       +++ si+aae+s+++++g+e+el+afrn+l+q ++  
  KOO21705.1 175 QLHDFGYRGVSSVESAAIGGA----AHLVSFQGTDTMAAlicvkhyykggealipginvtvpVPGISIPAAEHSTITSWGREGELDAFRNMLTQYPEgv 269
                 89*******************....************************************************************************** PP

                 .....HHHHHHHHHHCCHIIEEECHCCTHHHHHCCS-CCHHHSEEEEE-SS-HHH....HHHHHHHHHHCTCTTTCC.......CSEEEEESS-SHHHH CS
    NAPRTase  76 .....daldlwvaiekgnlgiaLtdlvltdaflkdfrleakaylgvRpDSGdpve....vieklaahygstlnskgy.......tkrlifsDgldveki 158
                      d++d+++a+ +  +g++L++++  +++           l+vRpDSG+p+e    +++ l + +++ +   ++       ++rli++Dg+ +e++
  KOO21705.1 270 vavvsDSYDIFNACSN-LWGTELKEMIKNRKGR----------LVVRPDSGEPMEivplLLDLLGKAFEEDVTTTSTghkllppYIRLIQGDGISYESL 357
                 ***************7.****************..........************99999999999999877666667799****************** PP

                 HHHHHHHHHTTC...EEEEEESHHHHSSECTTCTTTCCEEEEE.EEEEEEEEETTEETTBGGSSCCGSB................GSGHHHHHHHHHHC CS
    NAPRTase 159 ieilealkkkgf...niaFGiGtnltqdlnrdtlefavkasal.niviklvevnkdpvakisdrskkgr................lgdkefvkllrtvf 237
                   il a+ +kg+   n++FG G++l+q+l+rdt+++a+k+s++ + ++ ++ v+kdp+++ +++skkgr                +gd+ +++ l +vf
  KOO21705.1 358 GGILDAAAAKGWaaeNLVFGSGGALLQKLHRDTQKCAFKCSEIiKADGLATLVYKDPITDKGKQSKKGRltlemqngklttvtegKGDP-SKDVLIEVF 455
                 ****************************************987256788899*****************77777777766666655555.466666666 PP

                 TT CS
    NAPRTase 238 kn 239
                 +n
  KOO21705.1 456 RN 457
                 65 PP

>> DUF5598  Domain of unknown function (DUF5598)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  131.3   0.1   1.5e-42   1.3e-38       1      98 []       6     102 ..       6     102 .. 0.99
   2 ?   -3.5   0.0       1.6   1.4e+04      56      78 ..     438     460 ..     432     467 .. 0.77

  Alignments for each domain:
  == domain 1  score: 131.3 bits;  conditional E-value: 1.5e-42
     DUF5598   1 nlllatDsYKlsHkkqypkgtekvysylesRkggkydevvffGLqyllkeylegqvvteekveeakevvkehfkkevfnekgwekildkhdGkLPvki 98 
                 n++latDsYK+sH++qyp+gte+vysy+esR+ g ++evvffGLqy++k+yl g vvte+k++ ake++++h++   fne+gw++il +h+G LP+ i
  KOO21705.1   6 NIILATDSYKVSHYRQYPPGTEYVYSYFESRG-GVFEEVVFFGLQYFIKRYLCGVVVTEDKIAYAKEILDSHMGPGHFNEEGWRHILTAHGGMLPISI 102
                 89*****************************9.68*************************************************************98 PP

  == domain 2  score: -3.5 bits;  conditional E-value: 1.6
     DUF5598  56 vvteekveeakevvkehfkkevf 78 
                  vte k ++ k+v+ e+f++ v 
  KOO21705.1 438 TVTEGKGDPSKDVLIEVFRNGVM 460
                 58899999999999999887665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (478 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       344  (0.0191868); expected 358.6 (0.02)
Passed bias filter:                      333  (0.0185733); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.50u 0.21s 00:00:00.71 Elapsed: 00:00:00.38
# Mc/sec: 3744.28
//
Query:       KOO21706.1  [L=82]
Description: mitochondrial import inner membrane translocase subunit tim8-like protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.2e-23   82.5   1.7    1.5e-23   82.2   1.7    1.1  1  zf-Tim10_DDP  Tim10/DDP family zinc finger


Domain annotation for each model (and alignments):
>> zf-Tim10_DDP  Tim10/DDP family zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   82.2   1.7   8.2e-28   1.5e-23       2      63 ..      16      76 ..      15      77 .. 0.96

  Alignments for each domain:
  == domain 1  score: 82.2 bits;  conditional E-value: 8.2e-28
  zf-Tim10_DDP  2 qleqeqqvanaqelvnkltekCfkkCigkypgssLdsseesCldnCvdryldvsnlvskrlq 63
                  ++e e+q+a +q+ ++klte+Cf+kC++k pg++Ldsse +C++nC+ ryld+s ++++r+ 
    KOO21706.1 16 FMETENQKAIIQQAISKLTETCFDKCVTK-PGNKLDSSEANCIANCAGRYLDSSVFIVNRMM 76
                  899************************88.*****************************985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (82 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1095  (0.0610742); expected 358.6 (0.02)
Passed bias filter:                      517  (0.028836); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.34u 0.22s 00:00:00.56 Elapsed: 00:00:00.37
# Mc/sec: 667.82
//
Query:       KOO21707.1  [L=992]
Description: protein kinase domain containing protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    5.8e-53  179.9   0.0    1.1e-52  179.0   0.0    1.5  1  Pkinase         Protein kinase domain
    3.4e-27   95.4   0.0    5.9e-27   94.6   0.0    1.3  1  Pkinase_Tyr     Protein tyrosine kinase
    3.9e-26   90.9   0.1    6.7e-14   51.7   0.0    2.9  2  cNMP_binding    Cyclic nucleotide-binding domain
    8.5e-12   45.4   0.0    3.2e-11   43.5   0.0    2.0  1  RGS             Regulator of G protein signaling domain
    0.00011   22.0   0.0    0.00021   21.1   0.0    1.4  1  GRAM            GRAM domain
     0.0011   18.4   0.0     0.0019   17.6   0.0    1.4  1  Kinase-like     Kinase-like
     0.0091   14.8   0.0      0.016   14.0   0.0    1.3  1  Pkinase_fungal  Fungal protein kinase
  ------ inclusion threshold ------
      0.032   13.6   0.2      0.059   12.7   0.2    1.4  1  Kdo             Lipopolysaccharide kinase (Kdo/WaaP) family
      0.058   13.0   1.2        8.2    6.0   0.0    3.1  3  PIP49_C         Protein-kinase domain of FAM69


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  179.0   0.0   5.5e-56   1.1e-52       2     263 ..     655     910 ..     654     911 .. 0.89

  Alignments for each domain:
  == domain 1  score: 179.0 bits;  conditional E-value: 5.5e-56
                 EEEEEEEEESSEEEEEEEETTTTEEEEEEEEECHCHCHHHH....HHHHHHHHHHHHHSCTTB--EEEEEEESSEEEEEEE--TTEBHHHHHHHHSS-- CS
     Pkinase   2 ekleklGeGsfGkVykaveketgkivAvKkikkekakkkke....kkvlrEikilkklkhpnivrlyevfeekdelylvleyveggeladllerkgsls 96 
                 + ++ lG+G+fG+V+++v+++ gk++A+K++ ke ++ +      +k+  E  +++ l+hp++v+l ++f++++ l+lv+++v+ g+l +++ +k+ l+
  KOO21707.1 655 RLIRVLGQGGFGQVLEVVKRDCGKHYAMKVMHKEMMRRSLGsswrRKIHLEKDLMACLHHPFLVNLSYAFQNTEFLVLVMDLVPAGDLSEFVLTKKRLT 753
                 56899*****************************9998777677889999999********************************************** PP

                 HHHHHHHHHHHHHHHHHHHHTTEE-SS-SGGGEEEETTTEEEE-SGTTSEESSSSCS.BCTTTSCGGGS-HHHH....TTSCBSHHHHHHHHHHHHHHH CS
     Pkinase  97 eeeakkiakqilegleylHskgiiHrDlKpeNiLidekgelKitDFGlakelesssk.ltsfvgtseYlAPEvl....keneyskkvDvWslGvilyel 190
                  e++++i+ +++  + y+H++++++rD+KpeN+Lide+g+++++D Gla++++++++  +s+vgt  Y+APEv     ++++y+ ++D++++Gv++ye+
  KOO21707.1 754 AEQVRFIMMEVVCVIGYCHQQNVLYRDMKPENLLIDEEGHVRMIDMGLAARVSKKQPkRRSRVGTDCYMAPEVRwakdRREPYGMSCDWYTVGVLMYEF 852
                 ****************************************************99988799*************9999999******************* PP

                 HHSS-STTTSSHHHHHHHHHHTHHHHHHHCTSHH...HHHTTS-HHHHHHHHHHT-SSGCCSTT.....HHHHHTSGG CS
     Pkinase 191 ltgkppfsgekgkekvekeldqlekilkilgetkeklpeaseiseeakdllkkllkkdpkkRlt.....aeellqhpy 263
                  +g+ p+++ ++++                     +++ ++  ++ a +l+  ll++d++ Rl+     ++ +l+hpy
  KOO21707.1 853 SAGTVPYAHPEDEN--------------------PQYRPHDFKDSAAESLVMGLLHQDHNVRLGcdsrgIAGILDHPY 910
                 ********544443....................23334444577888888888888888888855555555666665 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   94.6   0.0   2.9e-30   5.9e-27       2     211 ..     655     864 ..     654     874 .. 0.90

  Alignments for each domain:
  == domain 1  score: 94.6 bits;  conditional E-value: 2.9e-30
                  EEEEEEEEESSEEEEEEEEETTTTSSEEEEEEEEE.STTSSHHHHHHHHHHHHHHHTS-BTTB--EEEEEESSSSEEEEEE--TTEBHHHHHHHTCTT CS
  Pkinase_Tyr   2 elgkklGeGafGkVvegtlkgekekkevkVavKtl.keeateeekeelleeakimkklkhpnivkllgvctkeepllivteyvkgGdLlkfLrkkeke 98 
                  +l + lG+G fG+V e   ++  ++  +kV+ K + +++  ++ ++++  e ++m  l+hp +v+l  +  ++e l++v+++v+ GdL++f+ +k  +
   KOO21707.1 655 RLIRVLGQGGFGQVLEVVKRDCGKHYAMKVMHKEMmRRSLGSSWRRKIHLEKDLMACLHHPFLVNLSYAFQNTEFLVLVMDLVPAGDLSEFVLTK--K 750
                  57899***************9999999*****987355666666999999******************************************998..9 PP

                  TSBHHHHHHHHHHHHHHHHHHHHTTEEEST-SGGGEEEEETTEEEE-STTTHEETTTSSEEEETTSSTSGGGGS-HHHHHHSE....EEHHHHHHHHH CS
  Pkinase_Tyr  99 kltlkdllsfalqvAkGmeyLeskklvHrdlaarNvLlsenkvvkisDfGLardiekddeyvkkeeaklpvkWmapEslkekk....ftsksDvWsfG 192
                  +lt +++  ++++v + + y ++++++ rd+   N L++e+ +v++ D GLa ++  ++++ k++++     +mapE+  +k     +  + D +  G
   KOO21707.1 751 RLTAEQVRFIMMEVVCVIGYCHQQNVLYRDMKPENLLIDEEGHVRMIDMGLAARV--SKKQPKRRSRVGTDCYMAPEVRWAKDrrepYGMSCDWYTVG 846
                  9******************************************************..555556677777889*****9766555689*********** PP

                  HHHHHHHTTSSGTTTTSHH CS
  Pkinase_Tyr 193 vllwEiftlgespypglkn 211
                  vl++E    g  py++ ++
   KOO21707.1 847 VLMYEFSA-GTVPYAHPED 864
                  *****655.*****87654 PP

>> cNMP_binding  Cyclic nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.3   0.0   2.2e-12   4.3e-09       2      87 ..      49     129 ..      48     131 .. 0.90
   2 !   51.7   0.0   3.4e-17   6.7e-14       2      89 .]     370     459 ..     369     459 .. 0.90

  Alignments for each domain:
  == domain 1  score: 36.3 bits;  conditional E-value: 2.2e-12
                   EEE-TT-EEE-TTSB-SEEEEEEES-EEEEEEETTS.EEEEEEE-TTEEESHHHHHHTS--SSEEEESSTEEEEEEEHHHHHHHHH CS
  cNMP_binding   2 rsfkagevifrqGdpadslyivlsGevrvyrlsedgkevvlavlgpGdlfGelalltgeprtatvvAltdsellalprddflellq 87 
                   + +k ge i+++G++ ds  ++++G++ +      g +  +a  ++Gdl+Ge+ ll g+    +v+A +++e ++++++ + e ++
    KOO21707.1  49 KTYKDGEAIITEGQASDSAIFIRKGTATIL----KGTK-EVAKRSKGDLIGEMTLLLGDLPGSSVIAAGTVEAYVVQHSRLAEHIA 129
                   78***************************3....4544.78999************9999*****************999887665 PP

  == domain 2  score: 51.7 bits;  conditional E-value: 3.4e-17
                   EEE-TT-EEE-TTSB-SEEEEEEES-EEEEEEETTS.E.EEEEEE-TTEEESHHHHHHTS--SSEEEESST.EEEEEEEHHHHHHHHHH- CS
  cNMP_binding   2 rsfkagevifrqGdpadslyivlsGevrvyrlsedgke.vvlavlgpGdlfGelalltgeprtatvvAltd.sellalprddflellqqd 89 
                    +fk+g+ ++r+G p + ly +l+G++rv  + +d  + vv+++ gpG++fGe +ll  ++ ta++v+ ++ + l++++ + +++l+ ++
    KOO21707.1 370 MRFKKGDSVLREGMPTRALYQILQGSLRVELQLKDQPTaVVVGHRGPGEMFGETSLLKSGCATASIVTDSEeAILVCVDGAYLESLFTSH 459
                   58***************************8666666553899999************99**********666************999875 PP

>> RGS  Regulator of G protein signaling domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.5   0.0   1.6e-14   3.2e-11       1     115 [.     501     635 ..     501     638 .. 0.89

  Alignments for each domain:
  == domain 1  score: 43.5 bits;  conditional E-value: 1.6e-14
                 -HHHHHTSHHHHHHHHHHHHHTTCT.............HHHHHHHHHHHHHTSSHHHHHHHHHHHHHHHHTSTTSTTSS.TS-HHHHHHHHHHHCSS.. CS
         RGS   1 sleslledqpgrslFreFlesefse.............enlsFwlaveefkkakeqeelkkkakeIyneylapsspkel.nidkklreelekrleke.. 83 
                 s++++l++++++ +Fr+F+ +  +e              +++Fw++v++f+++ e  +l+++ ++Iy+++++++    l    +  r+ +++ l k   
  KOO21707.1 501 SIHEILQNPAYMGIFRKFISK-ACEdradereaytmslAMFEFWMDVQDFRSEPEPPQLLDMGTRIYEHFIKSDGVMRLsCFTETQRAAIKTELGKLtv 598
                 5799**************988.4443555565666666789******************************999998887899999999999999989* PP

                 .....STTTTTTHHHHHHHHHHHHHHHHHHHHTSHHH CS
         RGS  84 .....qpsrklfeeaqeevfellekdsypkFlksely 115
                      ++ rklf+eaq+   + +e+++ + Fl+se +
  KOO21707.1 599 gsldiKEARKLFDEAQKIAVSAIEDQCMSPFLSSEHF 635
                 ***********************************99 PP

>> GRAM  GRAM domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.1   0.0   1.1e-07   0.00021       4      77 ..     187     265 ..     184     291 .. 0.92

  Alignments for each domain:
  == domain 1  score: 21.1 bits;  conditional E-value: 1.1e-07
                 HHHS----TT--EEEEEEEEEESS.......SEEEEEEEEESSEEEEEE-STT---EEEEEGGGEEEEEE....-TT-TT CS
        GRAM   4 rkkfkellpeEkllatykCyllrdg......gpvqGrlyltnyrlcFrskplgsskkvvlpladikriekstsaanllen 77 
                 r+ f  l ++E l+  + C++ +++       +  G +yl +++lcF  k +g  k+ ++ l+d++++ kst+ an+ e 
  KOO21707.1 187 RQLFA-LDKDEPLVLRTTCSMRKEAnalkdaNVSFGDMYLFEKHLCFDWKVFGFHKQQTVDLTDVVALLKSTELANTVEV 265
                 78899.9***********************9***************************************9999888765 PP

>> Kinase-like  Kinase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.6   0.0   9.6e-07    0.0019     134     257 ..     746     866 ..     725     894 .. 0.77

  Alignments for each domain:
  == domain 1  score: 17.6 bits;  conditional E-value: 9.6e-07
  Kinase-like 134 rsethkkletiarlllTlqlirlaanLqakglvhgkftvdnllldekgglmlggftaLvragtkvvl..seve.kgfaPpEllgsrggytrknktkmt 228
                  + ++++  ++  r ++ ++++ ++ + +++ ++  +++++nll de+g + + +++   r+ +k +   s v    +  pE++ +     ++++  + 
   KOO21707.1 746 VLTKKRLTAEQVRFIM-MEVVCVIGYCHQQNVLYRDMKPENLLIDEEGHVRMIDMGLAARVSKKQPKrrSRVGtDCYMAPEVRWA-----KDRREPYG 837
                  4444444445555555.99*************************************99999999886556776789999**9988.....46688999 PP

  Kinase-like 229 hkldaWqlGlviyriwclklPltlateea 257
                  ++ d +++G+ +y   + ++P   +++e 
   KOO21707.1 838 MSCDWYTVGVLMYEFSAGTVPYAHPEDEN 866
                  9********************98887664 PP

>> Pkinase_fungal  Fungal protein kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.0   0.0     8e-06     0.016     325     385 ..     773     826 ..     761     832 .. 0.87

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 8e-06
  Pkinase_fungal 325 kagiLHrDiSenNilitdskkegerkglLiDLDlakelsddssesgarertGTleFmaiev 385
                     ++++L rD   +N+li      +e +  +iD+ la  +s+  ++ ++r r+GT  +ma ev
      KOO21707.1 773 QQNVLYRDMKPENLLID-----EEGHVRMIDMGLAARVSK--KQPKRRSRVGTDCYMAPEV 826
                     889*************9.....5778899**********5..6667799*********776 PP

>> Kdo  Lipopolysaccharide kinase (Kdo/WaaP) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.2     3e-05     0.059      94     171 ..     731     804 ..     670     816 .. 0.87

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 3e-05
         Kdo  94 llterlegaqdLedllakwaelaeelkrallkavgrliaklhragvnHadlyaknillqqeeeeeaeiwliDldkarl 171
                 +l+ +l +a dL +++ + ++l  e  r ++++v  +i   h+ +v  +d+ + n+l+++e+    ++ +iD+  a++
  KOO21707.1 731 VLVMDLVPAGDLSEFVLTKKRLTAEQVRFIMMEVVCVIGYCHQQNVLYRDMKPENLLIDEEG----HVRMIDMGLAAR 804
                 5778999*********99888999999999*******************************9....999999865554 PP

>> PIP49_C  Protein-kinase domain of FAM69
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.9   0.1     0.038        76      91     163 ..     234     306 ..     227     327 .. 0.79
   2 ?    0.4   0.0      0.22   4.5e+02      30      75 ..     676     714 ..     672     729 .. 0.82
   3 ?    6.0   0.0    0.0041       8.2      69     120 ..     761     809 ..     731     823 .. 0.76

  Alignments for each domain:
  == domain 1  score: 2.9 bits;  conditional E-value: 0.038
     PIP49_C  91 lenfgvsddgrlkliDldnvfiedkleeklseqkcek.dedcsffdclskcdkeedrCsaevensnlaavCekl 163
                  + fg+ +++++ l+D+ +++  ++l + + e +c+    +++  ++  +   ++++C+++ +   l+a+  +l
  KOO21707.1 234 WKVFGFHKQQTVDLTDVVALLKSTELANTV-EVQCKGySLELTLPESCEETWVQMEQCRRQATAAALQAASAEL 306
                 5779*****************999999999.66666648999996666666679*******9999999876655 PP

  == domain 2  score: 0.4 bits;  conditional E-value: 0.22
     PIP49_C  30 CGrlyvveklgalklleksrslsqflkspwekrakialqlLelvee 75 
                 CG+ y++  + + ++      ++  l s+w++++++   l+  +++
  KOO21707.1 676 CGKHYAMKVMHK-EM------MRRSLGSSWRRKIHLEKDLMACLHH 714
                 999999988884.33......445599***********99999886 PP

  == domain 3  score: 6.0 bits;  conditional E-value: 0.0041
     PIP49_C  69 lLelveelenndpdslylcdvslenfgvsddgrlkliDldnvfiedkleekl 120
                 ++e+v  +    ++++++ d+++en+ ++++g++ +iD+  ++ ++k   k+
  KOO21707.1 761 MMEVVCVIGYCHQQNVLYRDMKPENLLIDEEGHVRMIDMGLAARVSK---KQ 809
                 5666666666667778999********************99888887...33 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (992 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       577  (0.0321825); expected 358.6 (0.02)
Passed bias filter:                      496  (0.0276647); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.76u 0.29s 00:00:01.05 Elapsed: 00:00:00.45
# Mc/sec: 6630.04
//
Query:       KOO21708.1  [L=278]
Description: transcriptional regulator [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.8e-12   45.6   0.1    2.8e-11   43.7   0.0    2.1  2  DUF179    Uncharacterized ACR, COG1678


Domain annotation for each model (and alignments):
>> DUF179  Uncharacterized ACR, COG1678
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.7   0.0      0.57     1e+04     110     119 ..      23      32 ..      22      33 .. 0.87
   2 !   43.7   0.0   1.5e-15   2.8e-11       4     103 ..      78     182 ..      75     269 .. 0.82

  Alignments for each domain:
  == domain 1  score: -3.7 bits;  conditional E-value: 0.57
                 EEEEEEEEEC CS
      DUF179 110 rvflGyagWe 119
                 ++f+G+  W+
  KOO21708.1  23 IMFIGCLDWS 32 
                 79*******7 PP

  == domain 2  score: 43.7 bits;  conditional E-value: 1.5e-15
                 TTTTSTTEEEEEEEEETTEEEEEESSSEE.EE.EHHHHHHHGCTSSSST-CHHH...SEEEES-SEEEEEEEEEEES..SSSEEECSTTEEEE-SSHHH CS
      DUF179   4 edpnFersVvlllehdeegalGlvlNrpl.el.tlkelleelleleaepatekl...ssvylGGPveqdrlfvlhsleelessleisdglylttsldil 97 
                 + + F+r+Vv++++hdeeg+ G  +N p+ ++ t + ++e+ + l ++ at++     s  lGGPv  d+ +vlh +e++++++++ +gl+++++l +l
  KOO21708.1  78 RGGIFDRAVVVITRHDEEGTAGYLINCPIeRIrTNHPVFESGAPLRHALATPEDpfaVSHGLGGPVGLDTWVVLHAFENVPGATRLGSGLHVGGDLATL 176
                 5678*************************65545555665555555444444445559999************************************99 PP

                 HHHCST CS
      DUF179  98 ealagk 103
                 ++ a+ 
  KOO21708.1 177 RERARA 182
                 998443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (278 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       410  (0.022868); expected 358.6 (0.02)
Passed bias filter:                      285  (0.015896); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.26s 00:00:00.65 Elapsed: 00:00:00.38
# Mc/sec: 2187.97
//
Query:       KOO21709.1  [L=241]
Description: cytochrome b5 domain-containing protein 1-like protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.9e-07   29.8   0.0    7.4e-07   29.2   0.0    1.4  1  Cyt-b5    Cytochrome b5-like Heme/Steroid binding domain


Domain annotation for each model (and alignments):
>> Cyt-b5  Cytochrome b5-like Heme/Steroid binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.2   0.0   4.1e-11   7.4e-07       1      54 [.      30      84 ..      30     130 .. 0.91

  Alignments for each domain:
  == domain 1  score: 29.2 bits;  conditional E-value: 4.1e-11
                EHHHHTTTECTTEEEEEETTEEEECTTTCCCSTTC.SHHHHTTTTSBBHHHHHHT CS
      Cyt-b5  1 tleelskhngkndlwvairgkVYDvskflskhpGg.esailkyaGkDateafksv 54
                t++e+++hn+ +dlwv++ gkV+D++k +   pG+  ++i ++aG+D++  f  v
  KOO21709.1 30 TPDEIKAHNRIDDLWVSMFGKVCDLTKLVAANPGSlVQPIIDAAGTDISHWFDPV 84
                789******************************88469***********998766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (241 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       393  (0.0219198); expected 358.6 (0.02)
Passed bias filter:                      373  (0.0208043); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.22s 00:00:00.63 Elapsed: 00:00:00.37
# Mc/sec: 1961.07
//
Query:       KOO21710.1  [L=192]
Description: hypothetical protein Ctob_001718 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (192 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       302  (0.0168442); expected 358.6 (0.02)
Passed bias filter:                      246  (0.0137208); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.41u 0.23s 00:00:00.64 Elapsed: 00:00:00.40
# Mc/sec: 1435.30
//
Query:       KOO21711.1  [L=2334]
Description: helicase conserved c-terminal domain containing protein, partial [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    4.2e-08   32.8   0.0    1.5e-07   31.0   0.0    1.9  1  SecA_DEAD    SecA DEAD-like domain
      2e-07   31.0   0.1    5.3e-07   29.7   0.1    1.7  1  DnaJ         DnaJ domain
     0.0029   17.7   0.0      0.011   15.9   0.0    2.0  1  MMR_HSR1     50S ribosome-binding GTPase
  ------ inclusion threshold ------
      0.026   14.4   0.0      0.077   12.9   0.0    1.7  1  RsgA_GTPase  RsgA GTPase
      0.041   14.4   0.0       0.34   11.4   0.0    2.7  2  ABC_tran     ABC transporter
      0.056   13.0   0.0       0.15   11.6   0.0    1.7  1  AAA_7        P-loop containing dynein motor region
       0.08   12.7   0.3        2.6    7.9   0.1    2.5  2  AAA_29       P-loop containing region of AAA domain


Domain annotation for each model (and alignments):
>> SecA_DEAD  SecA DEAD-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.0   0.0   5.9e-11   1.5e-07      90     148 ..    1837    1895 ..    1761    1915 .. 0.87

  Alignments for each domain:
  == domain 1  score: 31.0 bits;  conditional E-value: 5.9e-11
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   SecA_DEAD   90 hegkiaemkTGEGKtlvatlpaylnaltgkgvhvvtvndYLakrdaewmgpvyeflGls 148 
                   + ++ +++TGEGK+++     ++ al g  v  v  +dYL+ rd++ + +++e++G++
  KOO21711.1 1837 LQRQLMQIRTGEGKSIILGACSTVLALLGFRVRCVCYSDYLSGRDFDLFCELFESFGVR 1895
                  577899***************************************************96 PP

>> DnaJ  DnaJ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.7   0.1   2.1e-10   5.3e-07       2      61 ..    1361    1428 ..    1360    1429 .. 0.81

  Alignments for each domain:
  == domain 1  score: 29.7 bits;  conditional E-value: 2.1e-10
                  HHHHHTSSTTG-HHHHHHHHHHHHHHHSTTTSCCHHHHHH........HHHHHHHHHHHHTSHHHHHH CS
        DnaJ    2 yYeiLgvskdasedeIkkaYrklalkyHPDknpkdpeaee........kFkeineAyevLsdpekRkq 61  
                  +Y++L+++ +a++ ++ kaY+  ++kyHPDk p  p+ e         + +++++A   L d+  R++
  KOO21711.1 1361 WYSLLELDVSATKPDVAKAYKMVSKKYHPDKRPALPDVEGrraepghrMQQRVQDAKAKLEDDGARER 1428
                  8*******************************666644333344555477789999999999988876 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.0   4.1e-06     0.011       4      86 ..     185     318 ..     182     355 .. 0.68

  Alignments for each domain:
  == domain 1  score: 15.9 bits;  conditional E-value: 4.1e-06
                 EEESTTSSHHHHHHHHHTS........TEEESSSTTSSSSEEEEEEEETTEE...........................................EEEE CS
    MMR_HSR1   4 ivGrpNvGKStLinaltge........kaivsdkpgtTrdinegrvklkgke...........................................ielv 51 
                  +G++ vGKS L++a+tg+           v++ +  T  +          e                                           i+ +
  KOO21711.1 185 MLGNTGVGKSLLLQAMTGRritrrpyvPISVTANACSTDAMDISDA-----EpkasdqklvwdveeplegfgvgheqksetkcirhysegddfdsIVYL 278
                 68****************7222111111233333333333333333.....24555667888888888899999999999999999999999999**** PP

                 ECGGCSS...HHHHHHHHHHHHHHHHC.TSE..EEEEEETT CS
    MMR_HSR1  52 DtpGlie...gaseekglgkaflalee.adl..illvvdas 86 
                 D pG +e   g + +   + af+++ e +++  ++++vd++
  KOO21711.1 279 DAPG-YEdtaGVEVDIATSIAFKKVAErCSAlrFVVLVDCH 318
                 ****.976556666668888898877776551255555654 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0     3e-05     0.077      85     122 ..     166     203 ..     152     222 .. 0.84

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 3e-05
                  TTHTTHHHHHHHCTTSEEEEECSTTSSHHHHHHHHCTT CS
  RsgA_GTPase  85 ktkegleelkellkdktsvlvGqSGvGKStLinallpe 122
                  + +++l +++++   k+++++G++GvGKS L+ a++++
   KOO21711.1 166 HLEASLPSIEHVAGRKVALMLGNTGVGKSLLLQAMTGR 203
                  455778888888899******************99886 PP

>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   0.00013      0.34      11      37 ..     179     206 ..     173     245 .. 0.80
   2 ?   -3.2   0.0       4.2   1.1e+04     120     134 ..    1912    1926 ..    1912    1927 .. 0.92

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00013
                 TSEEE.EEESTTSSHHHHHHHHTTSS-- CS
                 xxxxx.xxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  11 gekva.ivGenGaGKStLlkllagllkp 37 
                 g+kva ++G++G GKS Ll++++g    
  KOO21711.1 179 GRKVAlMLGNTGVGKSLLLQAMTGRRIT 206
                 55555158***************98765 PP

  == domain 2  score: -3.2 bits;  conditional E-value: 4.2
                  HHHHHHTSSEEEEES CS
                  xxxxxxxxxxxxxxx RF
    ABC_tran  120 arallkkpkllllDE 134 
                  ar l+ +p++ll+DE
  KOO21711.1 1912 ARGLAAAPEILLVDE 1926
                  788999********9 PP

>> AAA_7  P-loop containing dynein motor region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   5.9e-05      0.15      29      74 ..     176     222 ..     171     230 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 5.9e-05
       AAA_7  29 llknkkpvllvGptGtGKtviikd.llkkldkekylsltinfsaqts 74 
                 +++ +k  l+ G+tG+GK+++++  + +++ ++ y++++++ +a+ +
  KOO21711.1 176 HVAGRKVALMLGNTGVGKSLLLQAmTGRRITRRPYVPISVTANACST 222
                 56778899****************88899999*******99999765 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.9   0.1     0.001       2.6      24      43 ..     182     201 ..     173     202 .. 0.84
   2 ?    1.9   0.0     0.074   1.9e+02      31      46 ..    1846    1861 ..    1837    1864 .. 0.91

  Alignments for each domain:
  == domain 1  score: 7.9 bits;  conditional E-value: 0.001
      AAA_29  24 atlltGpsGsGKSTllDAiq 43 
                 + l+ G++G+GKS ll A++
  KOO21711.1 182 VALMLGNTGVGKSLLLQAMT 201
                 789*************9986 PP

  == domain 2  score: 1.9 bits;  conditional E-value: 0.074
      AAA_29   31 sGsGKSTllDAiqalL 46  
                  +G GKS +l A +++L
  KOO21711.1 1846 TGEGKSIILGACSTVL 1861
                  799***********99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (2334 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       826  (0.0460706); expected 358.6 (0.02)
Passed bias filter:                      548  (0.030565); expected 358.6 (0.02)
Passed Vit filter:                        65  (0.00362541); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 1.19u 0.31s 00:00:01.50 Elapsed: 00:00:00.48
# Mc/sec: 14518.85
//
Query:       KOO21712.1  [L=94]
Description: centrin [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    6.5e-13   47.2   2.6    1.4e-05   24.3   0.2    2.2  2  EF-hand_1     EF hand
    1.3e-11   43.4   0.1      9e-06   25.2   0.1    2.2  2  EF-hand_6     EF-hand domain
    1.6e-11   44.5   0.2    2.1e-11   44.1   0.2    1.1  1  EF-hand_7     EF-hand domain pair
    1.4e-09   37.0   0.7    0.00015   21.1   0.2    2.2  2  EF-hand_5     EF hand
    1.5e-08   34.3   1.4    2.6e-05   24.0   0.1    2.1  2  EF-hand_8     EF-hand domain pair
  ------ inclusion threshold ------
       0.02   14.7   0.0      0.028   14.3   0.0    1.2  1  DUF3126       Protein of unknown function (DUF3126)
      0.027   14.8   0.1      0.039   14.3   0.1    1.2  1  SPARC_Ca_bdg  Secreted protein acidic and rich in cysteine Ca
       0.16   11.7   0.3          1    9.2   0.0    2.3  2  SHOCT         Short C-terminal domain


Domain annotation for each model (and alignments):
>> EF-hand_1  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.3   0.2   6.4e-09   1.4e-05       2      29 .]       7      34 ..       6      34 .. 0.92
   2 !   23.5   0.2   1.1e-08   2.5e-05       1      28 [.      42      69 ..      42      70 .. 0.93

  Alignments for each domain:
  == domain 1  score: 24.3 bits;  conditional E-value: 6.4e-09
                HHHHHHHHTTTSSSEEEHHHHHHHHHHH CS
   EF-hand_1  2 lkeiFrefDkDgdGkIdfeEfkellkkl 29
                + ++Fr +D D++G +d  E+++++k++
  KOO21712.1  7 VLKAFRQMDSDNSGELDEFELRKVVKTM 34
                569*********************9985 PP

  == domain 2  score: 23.5 bits;  conditional E-value: 1.1e-08
                HHHHHHHHHTTTSSSEEEHHHHHHHHHH CS
   EF-hand_1  1 elkeiFrefDkDgdGkIdfeEfkellkk 28
                ++k +++ +D+D +G I+ +Ef++++++
  KOO21712.1 42 DIKLMIACADTDDSGVITESEFIAIMMH 69
                5889**********************86 PP

>> EF-hand_6  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.2   0.1     4e-09     9e-06       3      28 ..       8      33 ..       6      45 .. 0.89
   2 !   16.5   0.0   2.6e-06    0.0057      10      28 ..      51      69 ..      48      82 .. 0.89

  Alignments for each domain:
  == domain 1  score: 25.2 bits;  conditional E-value: 4e-09
   EF-hand_6  3 reaFklfDkdgdGkidaeElrkalrk 28
                 +aF+++D d++G++d  Elrk+ ++
  KOO21712.1  8 LKAFRQMDSDNSGELDEFELRKVVKT 33
                689*******************9985 PP

  == domain 2  score: 16.5 bits;  conditional E-value: 2.6e-06
   EF-hand_6 10 DkdgdGkidaeElrkalrk 28
                D+d++G i+ +E+++++ +
  KOO21712.1 51 DTDDSGVITESEFIAIMMH 69
                9**************9975 PP

>> EF-hand_7  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.1   0.2   9.1e-15   2.1e-11       2      70 ..       5      67 ..       4      68 .. 0.95

  Alignments for each domain:
  == domain 1  score: 44.1 bits;  conditional E-value: 9.1e-15
   EF-hand_7  2 eklkeaFkelDtdgdgyldkeellrllrkifqgagegsklsdeelellfkefDtdkdGvisfdEFlkly 70
                ek+  aF+++D+d++g ld+ el+++++        +  l+d  ++l++ + Dtd++Gvi+ +EF +++
  KOO21712.1  5 EKVLKAFRQMDSDNSGELDEFELRKVVK------TMAPQLTDIDIKLMIACADTDDSGVITESEFIAIM 67
                78889***********************......999999**99**********************998 PP

>> EF-hand_5  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.1   0.2   6.6e-08   0.00015       1      25 []       8      31 ..       8      31 .. 0.92
   2 !   14.3   0.0   9.3e-06     0.021       5      24 ..      47      66 ..      43      68 .. 0.84

  Alignments for each domain:
  == domain 1  score: 21.1 bits;  conditional E-value: 6.6e-08
                HHHHHHHH-SS-SSCE-HHHHHHHH CS
   EF-hand_5  1 lkdtFqaiDlNgDGkIskeELktlv 25
                lk+ F+++D +++G ++  EL+++v
  KOO21712.1  8 LKA-FRQMDSDNSGELDEFELRKVV 31
                566.******************986 PP

  == domain 2  score: 14.3 bits;  conditional E-value: 9.3e-06
                HHHH-SS-SSCE-HHHHHHH CS
   EF-hand_5  5 FqaiDlNgDGkIskeELktl 24
                  ++D++ +G I+ +E+ ++
  KOO21712.1 47 IACADTDDSGVITESEFIAI 66
                5699*************885 PP

>> EF-hand_8  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.5   0.2     9e-05       0.2      23      52 ..       2      31 ..       1      34 [. 0.84
   2 !   24.0   0.1   1.1e-08   2.6e-05      11      52 ..      28      67 ..      26      69 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 9e-05
   EF-hand_8 23 lseeevdilfrefDtdgdGkisfeEFcvll 52
                l+ee+v   fr +D d++G ++  E   ++
  KOO21712.1  2 LTEEKVLKAFRQMDSDNSGELDEFELRKVV 31
                677777778**************9987665 PP

  == domain 2  score: 24.0 bits;  conditional E-value: 1.1e-08
   EF-hand_8 11 rrilrilglkk..glseeevdilfrefDtdgdGkisfeEFcvll 52
                r+    +++ +  +l++ ++  ++ ++Dtd++G+i+  EF++ +
  KOO21712.1 28 RK----VVKTMapQLTDIDIKLMIACADTDDSGVITESEFIAIM 67
                44....44455678**************************9876 PP

>> DUF3126  Protein of unknown function (DUF3126)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   0.0   1.2e-05     0.028       1      49 [.      26      74 ..      26      78 .. 0.92

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 1.2e-05
     DUF3126  1 EiaklqayLrrtfgneklkvkarpkkddsaEvylgdefiGvifkDeedg 49
                E++k+ + +  ++    +k++     +d+  v  ++efi++ + D e +
  KOO21712.1 26 ELRKVVKTMAPQLTDIDIKLMIACADTDDSGVITESEFIAIMMHDHESD 74
                78999999999999999****************************8865 PP

>> SPARC_Ca_bdg  Secreted protein acidic and rich in cysteine Ca binding region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   0.1   1.7e-05     0.039      55     111 ..       6      64 ..       2      66 .. 0.85

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 1.7e-05
  SPARC_Ca_bdg  55 pvawkFsklDtnsdkvlsksELaplraplvk..lehCikpflescDadkdkkislkEwc 111
                   +v   F ++D ++ + l++ EL+++ +++ +  ++  ik ++  +D+d+ + i+ +E++
    KOO21712.1   6 KVLKAFRQMDSDNSGELDEFELRKVVKTMAPqlTDIDIKLMIACADTDDSGVITESEFI 64 
                   56668********************99998733577888899999************96 PP

>> SHOCT  Short C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.2   0.1       0.4   8.9e+02      18      24 ..      23      29 ..      19      29 .. 0.68
   2 ?    9.2   0.0   0.00045         1      11      21 ..      54      64 ..      54      67 .. 0.88

  Alignments for each domain:
  == domain 1  score: -0.2 bits;  conditional E-value: 0.4
       SHOCT 18 EEFeakK 24
                +EFe +K
  KOO21712.1 23 DEFELRK 29
                5777666 PP

  == domain 2  score: 9.2 bits;  conditional E-value: 0.00045
       SHOCT 11 arGeIteEEFe 21
                ++G+Ite EF 
  KOO21712.1 54 DSGVITESEFI 64
                89********6 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (94 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       473  (0.0263818); expected 358.6 (0.02)
Passed bias filter:                      397  (0.0221429); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.36u 0.26s 00:00:00.62 Elapsed: 00:00:00.41
# Mc/sec: 691.77
//
Query:       KOO21713.1  [L=278]
Description: hypothetical protein Ctob_006273 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
     0.0044   17.4   7.8     0.0071   16.7   0.5    2.8  3  FA_hydroxylase  Fatty acid hydroxylase superfamily


Domain annotation for each model (and alignments):
>> FA_hydroxylase  Fatty acid hydroxylase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    3.9   0.4    0.0036        64       4      23 ..      14      33 ..      11      50 .. 0.78
   2 ?   -0.6   0.0     0.089   1.6e+03      29      42 ..      72      85 ..      63      97 .. 0.75
   3 !   16.7   0.5   3.9e-07    0.0071      53     133 .]     124     221 ..     105     221 .. 0.66

  Alignments for each domain:
  == domain 1  score: 3.9 bits;  conditional E-value: 0.0036
  FA_hydroxylase  4 allledfveYwvHr.llHrvk 23
                    + +l+   eY++Hr  +H+ +
      KOO21713.1 14 LYALMSANEYATHRwYQHE-E 33
                    66788999******999*8.3 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 0.089
  FA_hydroxylase 29 lHkvHHsseaptal 42
                     H  HH ++ +++ 
      KOO21713.1 72 GHVEHHAETYDDMS 85
                    58889987777664 PP

  == domain 3  score: 16.7 bits;  conditional E-value: 3.9e-07
  FA_hydroxylase  53 lllallllllllllg....plsalll.vlvlaallelliHsg........lhvslgwll.......erllatpraHrlHHskneegnfgvllslw 127
                     l ++l+++   +llg    ++ a+ll +++++a++ ++ H           ++ ++ +l        +++   + H+ HH    ++n+ v+ + +
      KOO21713.1 124 LPTTLPVF---ALLGfslmQTFAILLpGMLVHAAVWNMLHPPmhglppvpSRYGVPSFLlaklrdsAYFKYIYENHQGHHVLGGQCNYNVCCPGF 215
                     33332222...3333331233334447555555555556777566677663344444447788888999************************** PP

  FA_hydroxylase 128 DrlfgT 133
                     D+++gT
      KOO21713.1 216 DHVVGT 221
                     ****99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (278 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       384  (0.0214178); expected 358.6 (0.02)
Passed bias filter:                      287  (0.0160076); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.23s 00:00:00.66 Elapsed: 00:00:00.39
# Mc/sec: 2130.36
//
Query:       KOO21714.1  [L=193]
Description: brix domain-containing protein 2 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.6e-14   53.0   0.0    5.5e-14   52.7   0.0    1.1  1  Brix      Brix domain


Domain annotation for each model (and alignments):
>> Brix  Brix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.7   0.0   3.1e-18   5.5e-14      56     193 .]      43     165 ..      13     165 .. 0.77

  Alignments for each domain:
  == domain 1  score: 52.7 bits;  conditional E-value: 3.1e-18
                 SEEEEEE..SSTTEEEEEEEEECECTGGGSTTTSTS-TT---EEEEES.HHH......HHHHHHHHHHH..SEEE..G..-B-GG-SEEEEEEES.CCT CS
        Brix  56 slfvfelskkrPngptlefkvenyslmkdlkkakktefgsrPllvfngkenf......kllksllqdlFrvpkis..lkspklsglrrvvlftaaenqe 146
                 +l  +++    P+gp++ f+v+n+++  +lk    +   sr ll f+  ++f      + lk ll+ +F vp+ +  ++    + +r+ ++f++ +   
  KOO21714.1  43 YLWAAGC----PDGPSAMFRVLNVHTVAELKLDVRSAGSSRSLLCFD--QGFeacaerRVLKALLTRTFGVPRGTrlPQGAAVERVRHALCFSWLD--- 132
                 3333667....********************99999999********..666778998************66654113444459*********998... PP

                 TTECEEEEEEEEEEE..STTTTECT..T..EEEEEEESEEEEEEEEE CS
        Brix 147 tdktisfRhYaiklkksgkklpnlekekkerveLeEiGPrfdLklrk 193
                  d +i++R+Y++ +  +g            +  L+EiGPr++L++++
  KOO21714.1 133 -D-RIWLRVYRLGIGLDG------------TRDLSEIGPRLVLQPVR 165
                 .7.9********644444............558***********986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (193 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       187  (0.01043); expected 358.6 (0.02)
Passed bias filter:                      169  (0.00942607); expected 358.6 (0.02)
Passed Vit filter:                        11  (0.000613531); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.21s 00:00:00.61 Elapsed: 00:00:00.38
# Mc/sec: 1535.62
//
Query:       KOO21715.1  [L=933]
Description: fatty acyl- synthetase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.3e-96  323.8   0.0    1.7e-96  323.4   0.0    1.1  1  AMP-binding  AMP-binding enzyme
  ------ inclusion threshold ------
       0.12   13.0   3.0          1   10.0   1.2    3.0  3  Myelin_MBP   Myelin basic protein


Domain annotation for each model (and alignments):
>> AMP-binding  AMP-binding enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  323.4   0.0  1.9e-100   1.7e-96      17     422 ..     337     781 ..     313     782 .. 0.84

  Alignments for each domain:
  == domain 1  score: 323.4 bits;  conditional E-value: 1.9e-100
                  CCSTEEEEHHHHHHHHHHHHHHHHHTTSSTT-EEEEEESSSHHHHHHHHHHHHTT-EEEEEETTS-HHHHHHHHHHHTESEEEETCTCCCHHHHHHHH CS
  AMP-binding  17 sgegqtlTYreldervnrlAagLrslGvkkgdrVaillpnspewvvallailkaGavvvplnptltaeelayiledseakvliatvdselleklleaa 114
                   ge + ++Y+  +e++  ++ag+ +lG+k gd+ +i++ ns+ew +++l+ ++ G+++vp+++tl+   ++y  +++e kv++  +d+ +le++++++
   KOO21715.1 337 LGEFEFISYQTAHEQILTIGAGMAALGLKAGDTMGIYAANSMEWALIALGGFSRGLTCVPVYDTLGDNIVEYEAKHAELKVIF--CDQSKLEAVASVM 432
                  4678899****************************************************************************..************* PP

                  SCC-EECEEEEESCCS-HCCHCCCHCCCCSCTTS...............-TSCCCS-BTTSEEEEEEE--SSSS-EEEEEEHHHHHHHHHHHHHHHCS CS
  AMP-binding 115 akleavklvivldadellkeeelkeeeeseekae...............kpeeeeelkpddlayiiYTSGTTGkPKGVmlshrnlvanvaslkletrf 197
                  ++ ++vk v++++  +l+   +  e+ +s+ +++                p  +++++ ++la+i+YTSGTTG PKGV ++h ++v+ ++ ++     
   KOO21715.1 433 KNCPTVKFVVQIQ--PLPLWGDISEAVSSKFSDTckltdlkkltedgvkAPLAPAPPSGEELAFIMYTSGTTGDPKGVCIKHVAIVTGASYCA---GL 525
                  *887777777666..5555555666665565553567889999*****966677799*******************************88874...24 PP

                  CCTTT-EEEESS-TTSCHHHHHHHHHHHHTT-EEEE-TTCGCCHHHHHHHHHHHHT-SEEEEEHHHHHHH...............HHCCCHHCHHHHC CS
  AMP-binding 198 klkeddvvlsilplahifglilelllallsGatvvllpkdaaldpklllelieklkvtviagvPrvleal...............lesgalkaakkak 280
                  +l ++d++ls+lplahif+  + + +++++G++v++++++ +l    + e+i +lk+t+++gvPrv++++               +           k
   KOO21715.1 526 ELLPTDRYLSYLPLAHIFET-MVEHAIFAKGGSVGFFSGNIKL----ITEDILALKPTLFVGVPRVYQRFydgamakisemrpllA-----------K 607
                  45589**************6.*****************99874....589********************6666544444444330...........0 PP

                  ................................CGTT.-SEEEEESS-EBHHHHHHHHHHHTCEEEEEEEEGGGSSECEECHCTTTCTSTTS-BEE-TT CS
  AMP-binding 281 ................................dlss.lrlvllggeplspellrffralfgeevlegYGlTEttgvvtvlpleedkkklgsvGkplpg 345
                                                    ++ +r++++g++pl+ ++++f+ a++g++v++gYG+TE+++ +t   l  d +++g+vG+p+p 
   KOO21715.1 608 lishmlnteiaavqegkktlygkilakllgakLHGGcVRIMISGAAPLPIHVQEFLVACCGCSVIQGYGMTENCANATL-ALLPD-ARAGHVGPPMPT 703
                  3334444444455555556666666666666544467999*************************************94.43334.579********* PP

                  EEEEEE-TTTSCBEETTSE..EEEEEEETTS-SEBTT-HHHHHHHEEETCCEEEEEEEEEEETTSEEEEEEECCCEEEE CS
  AMP-binding 346 vevkivDeetgepvpdgee..GellvrgpgvmkgYlkkpeataeafdsegrwlrTGDlgrldedGyleivgRkkdlikl 422
                  +evk+vD  ++++v  + +  Ge++ r+ ++++gY+k++e+t + +  +++wl+TGD+gr+++dG+l i++Rkk+++kl
   KOO21715.1 704 TEVKLVDVPEMNYVSSNDPptGEICTRSICNFSGYHKNKEETDKMLE-KDGWLHTGDIGRWNKDGTLSIIDRKKNIFKL 781
                  **************9888889***********************997.767**************************98 PP

>> Myelin_MBP  Myelin basic protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   1.2   0.00011         1      51      95 ..      11      55 ..       3      73 .. 0.78
   2 ?   -0.0   0.0      0.14   1.2e+03      69     104 ..     227     262 ..     208     282 .. 0.83
   3 ?   -1.0   0.0      0.27   2.4e+03      74     135 ..     715     772 ..     714     784 .. 0.71

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.00011
  Myelin_MBP 51 sslPqrsqhsRkgdenpvvhFfknivsprtpppqaksrglslsrl 95
                +s+P r+  sR      v+  ++++v+p+tpp+++ ++ ++  ++
  KOO21715.1 11 ASSPMRPPGSRVRTTEVVLPPMQSVVAPATPPAKSPAKPKKAKAK 55
                79*****************************98544444433333 PP

  == domain 2  score: -0.0 bits;  conditional E-value: 0.14
  Myelin_MBP  69 vhFfknivsprtpppqaksrglslsrlswgaegkkp 104
                  hF    v p+tp +   s++ +l +l w++ ++  
  KOO21715.1 227 THFSGPCVVPQTPTAWRGSKTSELGTLFWQGVQQTL 262
                 6999999******99777899999999999988754 PP

  == domain 3  score: -1.0 bits;  conditional E-value: 0.27
  Myelin_MBP  74 nivsprtpppqaksrglslsrlswgaegkkpgvgsgklsekksaakGskgrradgqgtLski 135
                 n vs++ pp  +   ++s+ ++s  +  k++    ++l++    + G  gr  ++ gtLs i
  KOO21715.1 715 NYVSSNDPP-TGEICTRSICNFS--GYHKNKEETDKMLEKDGWLHTGDIGR-WNKDGTLSII 772
                 678888884.5555677888777..44444455678888888999999995.7899999954 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (933 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       438  (0.0244297); expected 358.6 (0.02)
Passed bias filter:                      347  (0.0193541); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.66u 0.26s 00:00:00.92 Elapsed: 00:00:00.44
# Mc/sec: 6346.75
//
Query:       KOO21716.1  [L=775]
Description: poly polymerase-like protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.6e-74  249.4   0.0    3.4e-74  249.0   0.0    1.1  1  PAP_central   Poly(A) polymerase central domain
    1.2e-07   31.6   2.4    1.3e-05   25.0   0.2    3.4  3  His_Phos_1    Histidine phosphatase superfamily (branch 1)
    4.6e-06   26.8   0.0      1e-05   25.7   0.0    1.5  1  NTP_transf_2  Nucleotidyltransferase domain
    0.00023   20.8   0.0     0.0013   18.4   0.0    2.0  2  PAP_RNA-bind  Poly(A) polymerase predicted RNA binding domain


Domain annotation for each model (and alignments):
>> PAP_central  Poly(A) polymerase central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  249.0   0.0   7.6e-78   3.4e-74       4     248 .]      11     351 ..       9     351 .. 0.97

  Alignments for each domain:
  == domain 1  score: 249.0 bits;  conditional E-value: 7.6e-78
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx........................................... RF
  PAP_central   4 epislakptekdlklteeLieeLkeqnlfeseeetkkreevlekleklvkefvkk........................................... 58 
                  +pisla pt  dl ++e+L++ ++  +  e++ee++kr+++++++++l++++v++                                           
   KOO21716.1  11 DPISLAGPTAFDLMASEKLEAFMAVASPTETQEEQDKRTHIITTFTALFRDWVRSvclakgydaetanragglvltsgsyrlglnergtdidticvap 108
                  69************************************************************************************************ PP

                  .....................................................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  PAP_central  59 .....................................................lkevpedldlkddslLknldekevrslnGvRvtdeilrlvpnket 103
                                                                       l++vpe+ld++dd +L+++d  + +slnG Rvt+ i +lvp+ +t
   KOO21716.1 109 rmvtrddffdslkviledrdevenlsavetakvpiitfdfdgvnldllfaqlpLDAVPETLDVNDDAVLQGVDFGTEKSLNGPRVTNLIEQLVPSFTT 206
                  ************************************************************************************************** PP

                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  PAP_central 104 FrlaLraiklWAkrraiysnvlgflgGvawAllvariCqlyPnaaastlvskfFlvlskWkwpqpvlLkeieekeeplrvWdpkvnksdrahlmpiit 201
                  Fr  Lr+++lWAkrr++ysn +g+lgGv++ +l a iCq+yPnaa s+l++kfF+vl++W wp+p+ +++  +    l+ Wdp  +  +r+h+mpi+t
   KOO21716.1 207 FRSLLRCVRLWAKRRGLYSNKMGYLGGVNCNILSAFICQMYPNAAVSVLLQKFFSVLREWPWPTPIEITPQYDAGLGLEGWDPS-QYGNRFHVMPILT 303
                  **********************************************************************999664488****6.7789********* PP

                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxx RF
  PAP_central 202 paypsmnstynvsrstlevlkeelkrgleit.eeiesgkakwekLfek 248
                  paypsmnst nvsr tl+v+  e++ +++ +   + +g   we++fe+
   KOO21716.1 304 PAYPSMNSTANVSRNTLDVMIWEMNVAHDKMrAALAQGGDGWERVFEP 351
                  *************************9987662678889999****985 PP

>> His_Phos_1  Histidine phosphatase superfamily (branch 1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.1   0.2     0.059   2.7e+02      81     140 ..     463     529 ..     451     534 .. 0.63
   2 !   25.0   0.2   2.9e-09   1.3e-05      19      74 ..     615     683 ..     603     691 .. 0.75
   3 ?    2.8   0.0     0.019        84     160     189 ..     730     759 ..     728     764 .. 0.85

  Alignments for each domain:
  == domain 1  score: 1.1 bits;  conditional E-value: 0.059
                 --GGGT.T-B.HHHHHH..HSHHHHHHHHH-GGG-B......S-BHHHHHHHHHHHHHHHHHHTTTS CS
  His_Phos_1  81 dfGdwe.glttaeiaeeypeeleawlrdpadvrppg......gEsledvaaRvaaaleelaarhege 140
                   G+++ gl t+++ +e+ +   a++++++d + +            d ++Rv++a +e++ar + e
  KOO21716.1 463 YAGALKnGLLTESVTREHLRLRVAYFSSWSDMPDEAfaslggRDAASDARRRVRRAKREARARDRAE 529
                 555555455555555555554444444443332222334674558899**********999998876 PP

  == domain 2  score: 25.0 bits;  conditional E-value: 2.9e-09
                 TT----..B-HHHHHHHHHHHHH...........HTTS---EEEE-SSHHHHHHHHHHHHCTT--EEE- CS
  His_Phos_1  19 grtdvp..LteeGreqAealaer...........lagepidaiysSplkRarqTaeliaealglpveld 74 
                 g +d+   Lt++G++q e l++r           ++g ++da++sS+l Ra+qTa +ia +l  pv+ +
  KOO21716.1 615 GSNDSLrvLTPLGYQQTEYLGARlraihdasegnFKGLRLDALISSDLTRAIQTADAIAPRLVEPVRSR 683
                 444444559**************55555555555566777777****************9998888654 PP

  == domain 3  score: 2.8 bits;  conditional E-value: 0.019
                 T--GGGGGGB---TT-EEEEEE-SS-EEEE CS
  His_Phos_1 160 glpleelrrleldnaslsvlefdeggwrlv 189
                 +lp+e++ r+ +++as+++l ++++g + v
  KOO21716.1 730 QLPPEAWLRFSVPHASITHLVIRANGSASV 759
                 5799*****************999886554 PP

>> NTP_transf_2  Nucleotidyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.7   0.0   2.3e-09     1e-05      16      83 ..      83     150 ..      75     160 .. 0.88

  Alignments for each domain:
  == domain 1  score: 25.7 bits;  conditional E-value: 2.3e-09
                   EEEEEHHHHCTTSCTTSSEEEEEEESTTCHHHHHHEHHHHHHHHCCCEEECTTEEEEEECEEECCCCT CS
  NTP_transf_2  16 kvvlfGSyarGtalkgSDiDllvvlpeevsrekkeegleklaeiikfleellglevdlvtrekledpl 83 
                    v + GSy+ G++ +g DiD+++v p++v r++ +++l+ + e+++++e l ++e   v++  + +++
    KOO21716.1  83 LVLTSGSYRLGLNERGTDIDTICVAPRMVTRDDFFDSLKVILEDRDEVENLSAVETAKVPIITFDFDG 150
                   57788***************************999********************9999988887655 PP

>> PAP_RNA-bind  Poly(A) polymerase predicted RNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.4   0.0   2.9e-07    0.0013      20      55 ..     378     413 ..     361     424 .. 0.85
   2 ?   -1.0   0.0      0.26   1.2e+03     106     134 ..     433     462 ..     430     502 .. 0.74

  Alignments for each domain:
  == domain 1  score: 18.4 bits;  conditional E-value: 2.9e-07
  PAP_RNA-bind  20 eaqkkWsglVESkvRlLvqkLeavesialahpfnkg 55 
                    + + W+g++ES++R+L +kLe+   i  ++  +k+
    KOO21716.1 378 SKLQGWCGYIESRLRFLAEKLEYGLPIVNVRLLPKK 413
                   56689*****************98777777777775 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 0.26
  PAP_RNA-bind 106 fYIGLeleekaks.kkldlsypvqeFkelc 134
                   + IG+++++   +   + l+ +v++Fke +
    KOO21716.1 433 YLIGFAVDRDRLQgTDIHLTNKVESFKEEI 462
                   6799999999988899**********9644 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (775 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       398  (0.0221987); expected 358.6 (0.02)
Passed bias filter:                      338  (0.0188521); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.59u 0.30s 00:00:00.88 Elapsed: 00:00:00.43
# Mc/sec: 5382.51
//
Query:       KOO21717.1  [L=362]
Description: n-acetyl-gamma-glutamyl-phosphate reductase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
      4e-10   40.2   0.5    5.9e-08   33.2   0.2    3.1  2  Semialdhyde_dh  Semialdehyde dehydrogenase, NAD binding domai
  ------ inclusion threshold ------
      0.011   16.3   1.1      0.018   15.6   0.1    1.8  2  F420_oxidored   NADP oxidoreductase coenzyme F420-dependent
      0.044   14.0   0.3       0.11   12.7   0.3    1.7  1  TrkA_N          TrkA-N domain


Domain annotation for each model (and alignments):
>> Semialdhyde_dh  Semialdehyde dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.2   0.2   9.8e-12   5.9e-08      55     119 ..      76     139 ..      38     141 .. 0.81
   2 ?    3.0   0.0     0.023   1.4e+02       5      24 ..     258     277 ..     258     346 .. 0.69

  Alignments for each domain:
  == domain 1  score: 33.2 bits;  conditional E-value: 9.8e-12
                     BEEEGGGGGCTT-SEEEE-SCHHHHHHHHHHHHHTTS..EEEESSSTTTTSTTSEBE-HHHHGGGGG CS
  Semialdhyde_dh  55 kvedvdeeelkevdivflalpagvskelapklaeagv..kviDlssdfRlkddavyvlpevnreaik 119
                     k   + +e+++++d v+l+lp +++ke a+ +a  +   ++iD+s ++R+++ + y+ pe+ +e+ k
      KOO21717.1  76 K---ARAEAINKADAVILCLPDDAAKEAAALVAPDNDrtVLIDASTAHRVNPAWAYGFPELSAEQRK 139
                     2...456999********************9965543449*********************999865 PP

  == domain 2  score: 3.0 bits;  conditional E-value: 0.023
                     ETTTSHHHHHHHHHHHCTSS CS
  Semialdhyde_dh   5 vGatGyvGqellrlLeehpe 24 
                     vGa G vG+++ + L+ h e
      KOO21717.1 258 VGAGGSVGAAVHKALAAHYE 277
                     8**************99864 PP

>> F420_oxidored  NADP oxidoreductase coenzyme F420-dependent
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.6   0.1     3e-06     0.018      48      95 ..      73     117 ..      49     119 .. 0.81
   2 ?   -2.8   0.1       1.7     1e+04       7      21 ..     261     275 ..     258     283 .. 0.82

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 3e-06
                    -EEECECHHHHHHH-SEEEE-S-HHHHHHHHHHCGHHHHTTSEEEEES CS
  F420_oxidored  48 vkvtavdneeaaeeadvvvlavkpedveevlselakdalkgklvisvl 95 
                     +++a   +ea+++ad v+l+++  +++e+++ + + +  ++++i+++
     KOO21717.1  73 KDAKA--RAEAINKADAVILCLPDDAAKEAAALV-APDNDRTVLIDAS 117
                    44555..99**********************999.8889999999975 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 1.7
                    TSHHHHHHHHHHHHT CS
  F420_oxidored   7 aGnmgealasgllaa 21 
                    +G++g+a+ + l+a+
     KOO21717.1 261 GGSVGAAVHKALAAH 275
                    689999999988875 PP

>> TrkA_N  TrkA-N domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.3   1.9e-05      0.11      34     100 ..      56     120 ..      50     129 .. 0.77

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 1.9e-05
                 HHHHHHTTSEEEES-TTSHHHHHHTTGGGESEEEE-SSSHHHHHHHHHHHHHHTSSSEEEEEESSGG CS
      TrkA_N  34 veelreeglevvvgdatdeevLeeagiekadaviaatgddeanilavllakelnpkkkiiaraqdpe 100
                 +e+ ++ +l ++  d  +++  ++  i+kadavi +++dd+a+ +a+l+a +  +++++   a++++
  KOO21717.1  56 LESRKDIELLTLPEDKRKDAKARAEAINKADAVILCLPDDAAKEAAALVAPD--NDRTVLIDASTAH 120
                 55555556667777888888888999***********************976..3355666666555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (362 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       395  (0.0220313); expected 358.6 (0.02)
Passed bias filter:                      346  (0.0192983); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.45u 0.25s 00:00:00.70 Elapsed: 00:00:00.40
# Mc/sec: 2733.99
//
Query:       KOO21718.1  [L=428]
Description: pyrophosphate--fructose-6-phosphate 1-phosphotransferase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    8.1e-37  127.1   0.2      2e-36  125.8   0.2    1.6  1  PFK       Phosphofructokinase


Domain annotation for each model (and alignments):
>> PFK  Phosphofructokinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  125.8   0.2   1.1e-40     2e-36       1     281 [.      23     365 ..      23     368 .. 0.84

  Alignments for each domain:
  == domain 1  score: 125.8 bits;  conditional E-value: 1.1e-40
                 EEEEEEESS--TTHHHHHHHHHH.HHHHTT.-EEEEETTHHHHHHTT-EEEE-...SGGGTT-TT--S-TT-----GGGGSHHH............HHH CS
         PFK   1 riailtsGGdapGmNaairavvr.taikkg.levygireGfeGlieeeieklt...ledvsgilsegGtiLgsaRskefkereg............rkk 82 
                 ++a lt GG ap + +a+ a++  +a+k+   e+++  +G++Gl+ ++   +t   + + s ++ +gG+ +g +R k  + ++             ++ 
  KOO21718.1  23 KVALLTAGGLAPCLSSAVGALITeYAVKHPsTEIICYINGYKGLLLGDSIFVTpgiRATASALHLHGGSPIGNSRVKLTNVKDCvkrglvkegedpQRV 121
                 699***************987653888888778***********888555344444568999**************99853333688899999999999 PP

                 HHHHHHHHT--EEEEEESHHHHHHHHHHHHT..T....--EEEEEEETT---TT-S--EEHHHHHHHHHHHHHHHHHHHHHHT-EEEE.EES-TT-THH CS
         PFK  83 aaenlkklgidaLvviGGdgslkganklseerkglleelkivgiPkTidNDipgtdytiGfdTAlntiveaidklkstakshkrvfvv.EvmGrncGwl 180
                 aa++l k g++ L  iGGd++ ++a +l+    +   +l+++g+PkTidND++    ++G+ TA++  ++ ++++  +a++  r+++v EvmGr+cGwl
  KOO21718.1 122 AADQLIKDGVEVLHTIGGDDTNTAAADLAAFLAREGYNLTVIGLPKTIDNDVYPITQSLGAWTAAEEGAKFFENVGAEATANPRMMIVhEVMGRDCGWL 220
                 *****************************999999999********************************************77777769********* PP

                 HHHHHHHHT....................-SEEE-TTS---HHHHHHHHHHHHT.T-S-EEEEEESSS....S-......................... CS
         PFK 181 Almaglagg....................advilipEepfdieeliekikklrkkgkkksiivvaEgak..dkeg........................ 233
                 +++++                         ++++ipE ++d+e  + ++k   + ++ +  i+++Ega   d                           
  KOO21718.1 221 TAATAAKYRerlaersllpmigltrgrldVHAVYIPELSIDLEAEALRLKAILD-ENDNVNIFISEGAGvkD--Ivakmeaegkkverdafghvkldsi 316
                 *99998886799999****************************99999999995.678889*******8431..2344445667777777777777777 PP

                 ..HHHHHHHHHHHHSS.-EEEEE-GGGGG-S---HHHHHHHHHHHHHHH CS
         PFK 234 iiaeelakeieektgi.evrvtvlGhlqrGgspsafDrilatrlGikav 281
                 + ++++a+ i++  g  +v v++ G+  r+ +++  D  l ++ +  av
  KOO21718.1 317 NPGKYFADTISAMIGAeKVLVQKSGYFARAAPANKADLRLIQQTAELAV 365
                 7777777777666664477777777777777777777766666665555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (428 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       483  (0.0269396); expected 358.6 (0.02)
Passed bias filter:                      448  (0.0249875); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.24s 00:00:00.71 Elapsed: 00:00:00.37
# Mc/sec: 3501.14
//
Query:       KOO21719.1  [L=149]
Description: c-4 methylsterol oxidase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.5e-17   63.0  14.3    4.4e-17   62.7  14.3    1.1  1  FA_hydroxylase  Fatty acid hydroxylase superfamily


Domain annotation for each model (and alignments):
>> FA_hydroxylase  Fatty acid hydroxylase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.7  14.3   2.4e-21   4.4e-17       2     133 .]       5     124 ..       4     124 .. 0.87

  Alignments for each domain:
  == domain 1  score: 62.7 bits;  conditional E-value: 2.4e-21
  FA_hydroxylase   2 llallledfveYwvHrllHrvkllwrrlHkvHHsseaptalaalrahplealllallllllllllg..plsalllvlvlaallelliHsglhvsl 94 
                     +++ ++ d++ Y +Hrl H+ ++l++++Hk HH+++apta+a ++a+ple+++ ++  ++l  +l+  ++  +++++++a   + + Hsg    +
      KOO21719.1   5 AIHGIVIDVWLYGTHRLIHH-PILYMWIHKFHHRFKAPTAVACVYANPLEFMIGNVGGVVLGPALTncHPYSAAFWMAYAITSTSFSHSG----Y 94 
                     677899**********9997.69********************************44444443444369999999***************....4 PP

  FA_hydroxylase  95 gwllerllatpraHrlHHskneegnfgvllslwDrlfgT 133
                     +        +++ H+ HH+++   nfgvl  + D ++gT
      KOO21719.1  95 TV------FGATSHDQHHEHFD-FNFGVL--ITDAVLGT 124
                     44......47899*********.*****5..89999998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (149 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       433  (0.0241508); expected 358.6 (0.02)
Passed bias filter:                      304  (0.0169558); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.25s 00:00:00.63 Elapsed: 00:00:00.39
# Mc/sec: 1148.68
//
Query:       KOO21720.1  [L=584]
Description: tetracycline resistance protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.3e-39  136.2  11.7    1.7e-25   89.8   1.4    2.1  2  MFS_1           Major Facilitator Superfamily
    3.7e-05   22.8   6.3       0.16   10.8   0.0    3.1  3  MFS_1_like      MFS_1 like family
  ------ inclusion threshold ------
      0.017   15.8   0.8      0.017   15.8   0.8    3.5  4  Multi_Drug_Res  Small Multidrug Resistance protein
       0.13   10.7  19.1      0.039   12.3   0.4    3.3  4  MFS_3           Transmembrane secretion effector


Domain annotation for each model (and alignments):
>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   89.8   1.4   3.7e-29   1.7e-25       3     187 ..      41     227 ..      40     278 .. 0.88
   2 !   51.7   3.2   1.4e-17   6.3e-14       3     165 ..     309     469 ..     307     546 .. 0.83

  Alignments for each domain:
  == domain 1  score: 89.8 bits;  conditional E-value: 3.7e-29
       MFS_1   3 laaflsalarsilgpalplalaedlgispse......igllltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllllfasslwlllvlrvlq 95 
                  +++l+ ++ ++l++++p +l +d   ++ e      +gll ++    + v++++lG+ sdr+Gr++v+ll+l+++++g l+l+ + s++ ++++r+++
  KOO21720.1  41 TIILLAQMSNTMLLSVVP-YLVRDVA-NGNErdaaviFGLLQSTLWTSQTVLAPVLGYASDRLGRKPVILLSLIVSGIGNLALSASLSSTHMMISRIIS 137
                 5678999999********.9999977.55555667779999999999********************************555552233347******** PP

       MFS_1  96 GlgagalfpagaaliadwfpkeergraigllsagfslGailgpllggllasslgWravfyilaivsllafvlfllllpeepperkrkspkee 187
                 Glg  + +++  a++ad + k+e++  +gl+++  +++   gp++gg++ ++lg r++    ++++l a++l+ll+ p+e ++++++++ + 
  KOO21720.1 138 GLG--FQITLFRAYFADTSVKKEKAGKFGLIGVVQQFALFAGPAIGGFVGDWLGDRSATASSGFLFLCAALLALLWRPDETKAEANDKGMDT 227
                 **8..7******************************************************************99999999999888887666 PP

  == domain 2  score: 51.7 bits;  conditional E-value: 1.4e-17
       MFS_1   3 laaflsalarsilgpalplalaedlgispseigllltlyalgaavaslplGrlsdr.fGrrrvlllglllfalglllllfasslwlllvlrvlqGlgag 100
                  + f+  ++++++ +++  + +  l + + ++g++l++ +lg ++ + +l r++ r +G  r+l++++++ ++g+++l++a++l  l+ +  l ++g+g
  KOO21720.1 309 SLNFFFRFSFAAYKSVFAFFCMAMLKWEKKQVGMILSAMGLGGMFVQGVLVRVTVRsLGEERTLFVAMAAESIGFIVLSYAHGLASLIPALSLIAIGYG 407
                 5678888888888888888666889*******************************99****************666668899999************* PP

       MFS_1 101 alfpagaaliadwfpkeergraigllsagfslGailgpllggllasslgWravfyilaivsllaf 165
                 +++p   +l+a  +p  e+g + g+++    +G ++gp+lggl++ +lg   + +++++++l ++
  KOO21720.1 408 LAVPCLTTLFAN-VPV-EQGIMQGIAGFVDRFGQAFGPILGGLIYRQLGAANL-MLCTGLALAGI 469
                 ******999999.666.9***************************99995444.33333333332 PP

>> MFS_1_like  MFS_1 like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.2   0.1     0.014        63      37      81 ..      77     120 ..      69     130 .. 0.81
   2 !   10.8   0.0   3.5e-05      0.16      33     107 ..     160     300 ..     138     341 .. 0.65
   3 !    8.1   4.6   0.00024       1.1     238     380 ..     315     456 ..     305     460 .. 0.73

  Alignments for each domain:
  == domain 1  score: 2.2 bits;  conditional E-value: 0.014
  MFS_1_like  37 giitlilpltsilsppiwgvlaDrfgkrkkvvilslllsavlfls 81 
                 g++ + l   + + +p++g  +Dr+g rk+v++lsl++s +  l+
  KOO21720.1  77 GLLQSTLWTSQTVLAPVLGYASDRLG-RKPVILLSLIVSGIGNLA 120
                 6666666677778899*********8.699*******99886665 PP

  == domain 2  score: 10.8 bits;  conditional E-value: 3.5e-05
  MFS_1_like  33 aseigiitlilpltsilsppiwgvlaDrfgkrkkvvilslllsavlflsllfippskerqeesklevsvaqdvd......................... 106
                 a + g+i ++  +  +++p i g++ D +g r + ++ + l+ ++++l+ll  p++++ + ++k         +                         
  KOO21720.1 160 AGKFGLIGVVQQFALFAGPAIGGFVGDWLGDRSATASSGFLFLCAALLALLWRPDETKAEANDKGMDTAM---Edgqkdsthkrvggiemvkidlsgqr 255
                 446799******************************************9*98774443333333222222...12234455555555555555555555 PP

  MFS_1_like 107 ............................................a 107
                                                              
  KOO21720.1 256 gcepdgrvgvnggvnggdascmgsladnavcrrlikawrfarwlG 300
                 555555555555555555555555555555555555555555551 PP

  == domain 3  score: 8.1 bits;  conditional E-value: 0.00024
  MFS_1_like 238 gmswgiien.FlflYLkelgasntllGslvalgvvaeiplf.ffaeklleklGhvklliiallayilrfllyaiienawlvlpievLhgisfgllwaaa 334
                  +s++++++ F+f  +  l+  +  +G+++    ++ + +  ++    ++ lG ++ l++a+ a  + f+++++ + +  ++p+  L +i +gl    +
  KOO21720.1 315 RFSFAAYKSvFAFFCMAMLKWEKKQVGMILSAMGLGGMFVQgVLVRVTVRSLGEERTLFVAMAAESIGFIVLSYAHGLASLIPALSLIAIGYGLAVPCL 413
                 5555555541333334667777777776655444444444314445567899*******************************************6666 PP

  MFS_1_like 335 veyvskiapksleatgqgllsglyfglGralGsliGGllwdlksai 380
                 ++  +  +p   ++ +qg+   +   +G+a+G ++GGl++ + +a+
  KOO21720.1 414 TTLFA-NVPV-EQGIMQGIAG-FVDRFGQAFGPILGGLIYRQLGAA 456
                 55555.5665.5899***965.5688**************776665 PP

>> Multi_Drug_Res  Small Multidrug Resistance protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.0       1.7   7.4e+03      18      57 ..      17      56 ..      11      59 .. 0.75
   2 ?    1.2   0.2      0.13   5.8e+02      28      78 ..     103     151 ..      85     166 .. 0.72
   3 ?   -0.2   0.2      0.37   1.7e+03      15      50 ..     328     363 ..     315     369 .. 0.64
   4 ?   15.8   0.8   3.8e-06     0.017       6      55 ..     372     422 ..     366     430 .. 0.92

  Alignments for each domain:
  == domain 1  score: -2.3 bits;  conditional E-value: 1.7
                    HH--------------HHHHHHHHHHHHHHHHH------- CS
  Multi_Drug_Res 18 ilLklsegftkltpsllvivgygisfllLskalkslpvsv 57
                    + L +++gf+ +   +l +++  + ++lL++  +++ +sv
      KOO21720.1 17 LPLGITKGFNPTECAPLQLLFGPFTIILLAQMSNTMLLSV 56
                    5566678888888888888888888888888888877776 PP

  == domain 2  score: 1.2 bits;  conditional E-value: 0.13
                     ------HHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH CS
  Multi_Drug_Res  28 kltpsllvivgygisfllLskalkslpvsvAYavwsGiGtvlivlvgillf 78 
                     ++ ++ll +++ gi  l Ls +l+s+ + ++  + sG+G+ ++ l+  ++ 
      KOO21720.1 103 RKPVILLSLIVSGIGNLALSASLSSTHMMIS-RIISGLGFQIT-LFRAYFA 151
                     5556677778888899999999999999887.58899998654.5555555 PP

  == domain 3  score: -0.2 bits;  conditional E-value: 0.37
                     HHHHH--------------HHHHHHHHHHHHHHHHH CS
  Multi_Drug_Res  15 vgailLklsegftkltpsllvivgygisfllLskal 50 
                     +  ++Lk+ +++  +++s++ + g+ +  +l   ++
      KOO21720.1 328 FCMAMLKWEKKQVGMILSAMGLGGMFVQGVLVRVTV 363
                     445677777777777777777777666666655555 PP

  == domain 4  score: 15.8 bits;  conditional E-value: 3.8e-06
                     HHHHHHHHHHHHHH--------------HHHH.HHHHHHHHHHHHH----- CS
  Multi_Drug_Res   6 lvlAillevvgailLklsegftkltpsllviv.gygisfllLskalkslpv 55 
                     l++A  +e +g i+L +++g+++l+p l +i+ gyg+++ +L+    ++pv
      KOO21720.1 372 LFVAMAAESIGFIVLSYAHGLASLIPALSLIAiGYGLAVPCLTTLFANVPV 422
                     99************************99988779********998888887 PP

>> MFS_3  Transmembrane secretion effector
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.1   1.0    0.0056        25     233     325 ..      49     145 ..      42     159 .. 0.86
   2 ?   12.3   0.4   8.8e-06     0.039      96     212 ..     120     234 ..      88     248 .. 0.74
   3 ?    4.6   6.2     0.002         9     209     318 ..     291     403 ..     276     426 .. 0.74
   4 ?   -1.3   0.1      0.12   5.2e+02     152     174 ..     439     461 ..     427     478 .. 0.79

  Alignments for each domain:
  == domain 1  score: 3.1 bits;  conditional E-value: 0.0056
       MFS_3 233 sasavlaLLPlvardqldgd....alvyGillgalGvGAilgalllsrLRerlsserlvllaavalAlvllslalasslwvavlvlllgGaaWital 325
                 s +  l+++P ++rd  +g+    a+++G+l ++l +   + a +l    +rl+ + ++ll+ ++  +  l+l+ + s   +++  +++G ++ ++l
  KOO21720.1  49 SNTMLLSVVPYLVRDVANGNerdaAVIFGLLQSTLWTSQTVLAPVLGYASDRLGRKPVILLSLIVSGIGNLALSASLSSTHMMISRIISGLGFQITL 145
                 556678999******999975555899********99999999999999****************99999999998888888898899988776655 PP

  == domain 2  score: 12.3 bits;  conditional E-value: 8.8e-06
       MFS_3  96 aalgllspwlllaltlligiGaalndPaWqAsvgelvkrrdvpaAvaLnsvginiaRsvGPAlgGvlvaavGaalafavnalsylalivallrwkrevr 194
                 a+   ls   ++++ ++ g+G+ ++   ++A   +   +++      L  v    a  +GPA+gG +  ++G   a a   + +l   +  l w+++ +
  KOO21720.1 120 ALSASLSSTHMMISRIISGLGFQIT--LFRAYFADTSVKKEKAGKFGLIGVVQQFALFAGPAIGGFVGDWLGDRSATASSGFLFLCAALLALLWRPDET 216
                 3333445556667777778877665..5788888887777777888999999999999*****************9999998888877777789***** PP

       MFS_3 195 ksslprEkllealraglR 212
                 k +     + +a+++g +
  KOO21720.1 217 KAEANDKGMDTAMEDGQK 234
                 ***************975 PP

  == domain 3  score: 4.6 bits;  conditional E-value: 0.002
       MFS_3 209 aglRftaa..sreikavlvRaalFglsasavlaLLPlvardqldgdalvyGillgalGvGAil.galllsrLRerlsserlvllaavalAlvllslala 304
                  ++Rf++     ++   l   + F +s +a  ++  +     l+ +    G++l+a+G+G ++  ++l+    ++l++er + +a++a  +  ++l+ a
  KOO21720.1 291 KAWRFARWlgGYDLYPLLSLNFFFRFSFAAYKSVFAFFCMAMLKWEKKQVGMILSAMGLGGMFvQGVLVRVTVRSLGEERTLFVAMAAESIGFIVLSYA 389
                 5666666521234444455556666666777788888888999999999**********9865156666666788************************ PP

       MFS_3 305 sslwvavlvlllgG 318
                 + l+ ++++l l  
  KOO21720.1 390 HGLASLIPALSLIA 403
                 *9999999986644 PP

  == domain 4  score: -1.3 bits;  conditional E-value: 0.12
       MFS_3 152 RsvGPAlgGvlvaavGaalafav 174
                  + GP lgG++   +Gaa     
  KOO21720.1 439 QAFGPILGGLIYRQLGAANLMLC 461
                 57899999999999999866554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (584 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       415  (0.0231469); expected 358.6 (0.02)
Passed bias filter:                      249  (0.0138881); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.57u 0.24s 00:00:00.81 Elapsed: 00:00:00.40
# Mc/sec: 4386.18
//
Query:       KOO21721.1  [L=328]
Description: glyoxal reductase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    4.7e-38  131.0   0.0    5.2e-36  124.4   0.0    2.1  1  Aldo_ket_red  Aldo/keto reductase family


Domain annotation for each model (and alignments):
>> Aldo_ket_red  Aldo/keto reductase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  124.4   0.0   2.9e-40   5.2e-36       4     292 ..      40     326 ..      37     327 .. 0.88

  Alignments for each domain:
  == domain 1  score: 124.4 bits;  conditional E-value: 2.9e-40
                   EE-SSS-ST.......TS-HHHHHHHHHHHHHTT--EEE--TT-TTTHHHHHHHHHHHH-TTTGGG-EEEEEE--SSSTTSSSS-HHHHHHHHHH.H CS
  Aldo_ket_red   4 lGtwqlgsk......eeiskeealellrraleaGinffDtAevYgkgqseellGealkksrkkreeviiatKvdlrdaeiksglskenireslee.s 93 
                   lGtw+ + k       +  +++a + +   ++    ++DtA+ Y   + + ++Geal+++++kre+++i+tK+   +++     + +  + +l+   
    KOO21721.1  40 LGTWRGSYKecigndYACVRAKAKASVMSWVDVKGDHVDTANNY---RTQLEVGEALAQKGVKREDIFITTKC---PGPLGLTATIQCAEDNLQMlG 130
                   666665555444444555666777778888999999********...88888*********************...666666666666666666423 PP

                   HHHHT-.S-EEEEEE-S--TTS-............................HHHHHHHHHHHHHTTSEEEEEEES--HHHHHHHHHTTT--EEEEE- CS
  Aldo_ket_red  94 lkrLgt.dyvDllllHrpdpslp...........................sieevldaleelvkeGkiraiGvSnfsveqlekakkkkkvkivavqv 162
                   l   +t  y+Dlll+H p++  p                            + e+++a+e l+k G +++iG+Sn++  ++ + ++ + v+i+  qv
    KOO21721.1 131 LYGVNTtGYLDLLLIHYPNVIKPecygpssdpdiqkecagtgqfqdpgtaARQETWKAMELLQKLGRVKSIGFSNYNSTHIAETLAVATVPIALHQV 227
                   55555559*********************************************************************99999999************ PP

                   B-BTT-HHHHTTHHHHHHHTT-EEEEBSTTGGGTTGTTTSS---SSSCCC-------TS-HHHHHHHHHHHHHHHHTT--HHHHHHHHHTTSTT-SE CS
  Aldo_ket_red 163 eynllreleeegllelckkkgvpliaysplggGlltgkyqseedkedkeprkdlkrdertsknldaaeelselakehgvslaqlalryalsqpavgi 259
                   e+n+l  +++e +l lc k+g++l a+splgg   +                            + ++++ ++a++h+ s aq++l++ l  ++++ 
    KOO21721.1 228 EWNPL--DHDEDMLALCTKHGIQLQAWSPLGGDHGD---------------------------ILSNPQVVAIAATHNTSTAQVVLKWSL--QRGVA 293
                   *****..************************53322...........................378999*********************..9**** PP

                   EEE--SSHHHHHHHHGGGG----HHHHHHHHHH CS
  Aldo_ket_red 260 vipgasnieqlednldalelklseeevaeldel 292
                   v+ g+ n++++   ld + ++l+++e++el++l
    KOO21721.1 294 VVTGTDNPAHMASDLDLWGFTLTDQEMTELNNL 326
                   ******************************976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (328 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       484  (0.0269954); expected 358.6 (0.02)
Passed bias filter:                      441  (0.024597); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.25s 00:00:00.70 Elapsed: 00:00:00.38
# Mc/sec: 2572.51
//
Query:       KOO21722.1  [L=285]
Description: procollagen-proline dioxygenase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.1e-11   45.5   0.0    1.7e-11   44.9   0.0    1.3  1  2OG-FeII_Oxy_3  2OG-Fe(II) oxygenase superfamily


Domain annotation for each model (and alignments):
>> 2OG-FeII_Oxy_3  2OG-Fe(II) oxygenase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.9   0.0   9.3e-16   1.7e-11       3      96 .]     168     266 ..     166     266 .. 0.86

  Alignments for each domain:
  == domain 1  score: 44.9 bits;  conditional E-value: 9.3e-16
                     EEEE-TT-EEEEE-SS--.....--TT.-.EEEEEEEEE....ET-B--EEE..........---TT-EEEEE-..B-T.......EEE--B.-S CS
  2OG-FeII_Oxy_3   3 vlrygegqeykpHvDnfe.....keegsgqrrltvllyLnekeseeGGelelyekdkeavkikpkkgrlvlFesdellp.......Hevlpvtkg 85 
                     + ry++gq +kpH+D+++     ++e+ gq  +t+++yLn  +  +GG  ++    +   +++p++g+++lF+  + +        He+++    
      KOO21722.1 168 IIRYERGQALKPHFDANRearleDAERGGQVLATAIVYLN--DVRSGGRTRF---GRLGLDVQPQRGECLLFFPADKNGafderteHEGMEAD-- 255
                     789************999*****777779**********8..4589**9777...5567788*******99999655449***********73.. PP

                     S-EEEEEEEEE CS
  2OG-FeII_Oxy_3  86 geRlsltgwir 96 
                      e++ + +w++
      KOO21722.1 256 EEKWLARIWVH 266
                     39*******97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (285 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       341  (0.0190195); expected 358.6 (0.02)
Passed bias filter:                      296  (0.0165096); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.23s 00:00:00.61 Elapsed: 00:00:00.36
# Mc/sec: 2395.61
//
Query:       KOO21723.1  [L=2182]
Description: hypothetical protein Ctob_000899 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
      7e-13   47.4   0.0    2.4e-05   23.9   0.0    3.0  2  EF-hand_6      EF-hand domain
    1.9e-12   45.8   0.2    1.5e-05   24.2   0.0    2.8  2  EF-hand_1      EF hand
    6.4e-10   39.3   0.4    2.4e-07   31.1   0.1    3.4  3  EF-hand_7      EF-hand domain pair
    7.9e-08   31.5   0.9    6.7e-05   22.2   0.1    2.7  2  EF-hand_5      EF hand
      4e-06   26.6   0.3    5.8e-05   22.9   0.1    2.2  2  EF-hand_8      EF-hand domain pair
  ------ inclusion threshold ------
       0.15   12.0  17.3        5.4    7.1   0.0    7.5  9  RuBisCO_small  Ribulose bisphosphate carboxylase, small chain


Domain annotation for each model (and alignments):
>> EF-hand_6  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.9   0.0   8.1e-09   2.4e-05       3      31 .]    2082    2109 ..    2080    2109 .. 0.90
   2 !   20.2   0.0   1.2e-07   0.00036       2      28 ..    2117    2143 ..    2116    2158 .. 0.90

  Alignments for each domain:
  == domain 1  score: 23.9 bits;  conditional E-value: 8.1e-09
   EF-hand_6    3 reaFklfDkdgdGkidaeElrkalrkalg 31  
                   ++F+++D +gdG+i+++E++ka+  +lg
  KOO21723.1 2082 LDLFREWDANGDGQISKKEFQKAMP-MLG 2109
                  689*********************8.665 PP

  == domain 2  score: 20.2 bits;  conditional E-value: 1.2e-07
   EF-hand_6    2 lreaFklfDkdgdGkidaeElrkalrk 28  
                  ++++F+++D d++G   ++El+k+lr+
  KOO21723.1 2117 VNDLFDQYDPDKSGVMEFAELQKMLRR 2143
                  579**********************96 PP

>> EF-hand_1  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.2   0.0   5.2e-09   1.5e-05       3      27 ..    2082    2106 ..    2080    2108 .. 0.90
   2 !   18.8   0.0   2.6e-07   0.00078       2      28 ..    2117    2143 ..    2116    2143 .. 0.93

  Alignments for each domain:
  == domain 1  score: 24.2 bits;  conditional E-value: 5.2e-09
                  HHHHHHHTTTSSSEEEHHHHHHHHH CS
   EF-hand_1    3 keiFrefDkDgdGkIdfeEfkellk 27  
                   ++Fre D +gdG+I+++Ef++++ 
  KOO21723.1 2082 LDLFREWDANGDGQISKKEFQKAMP 2106
                  579********************96 PP

  == domain 2  score: 18.8 bits;  conditional E-value: 2.6e-07
                  HHHHHHHHTTTSSSEEEHHHHHHHHHH CS
   EF-hand_1    2 lkeiFrefDkDgdGkIdfeEfkellkk 28  
                  ++++F+ +D D++G ++f E++++l++
  KOO21723.1 2117 VNDLFDQYDPDKSGVMEFAELQKMLRR 2143
                  5789********************985 PP

>> EF-hand_7  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.9   0.1         6   1.8e+04      17      29 ..     509     521 ..     490     539 .. 0.60
   2 !   16.8   0.0   2.4e-06    0.0071      46      70 ..    2081    2105 ..    2059    2106 .. 0.82
   3 !   31.1   0.1   8.1e-11   2.4e-07       6      70 ..    2083    2141 ..    2078    2142 .. 0.94

  Alignments for each domain:
  == domain 1  score: -3.9 bits;  conditional E-value: 6
   EF-hand_7  17 gyldkeellrllr 29 
                 g+l+ ee++r ++
  KOO21723.1 509 GRLTDEEVQRQIE 521
                 4455555443333 PP

  == domain 2  score: 16.8 bits;  conditional E-value: 2.4e-06
   EF-hand_7   46 lellfkefDtdkdGvisfdEFlkly 70  
                  + +lf+e+D ++dG+is  EF+k++
  KOO21723.1 2081 VLDLFREWDANGDGQISKKEFQKAM 2105
                  669********************98 PP

  == domain 3  score: 31.1 bits;  conditional E-value: 8.1e-11
   EF-hand_7    6 eaFkelDtdgdgyldkeellrllrkifqgagegsklsdeelellfkefDtdkdGvisfdEFlkly 70  
                  + F+e D +gdg ++k e+++++         g +l+ +++ +lf+  D dk+Gv+ f E++k+ 
  KOO21723.1 2083 DLFREWDANGDGQISKKEFQKAMP------MLGMDLPVKAVNDLFDQYDPDKSGVMEFAELQKML 2141
                  78*********************9......89999999************************986 PP

>> EF-hand_5  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.2   0.1   2.2e-08   6.7e-05       3      23 ..    2083    2103 ..    2081    2105 .. 0.91
   2 !    7.3   0.0    0.0012       3.5       2      24 ..    2118    2140 ..    2117    2141 .. 0.93

  Alignments for each domain:
  == domain 1  score: 22.2 bits;  conditional E-value: 2.2e-08
                  HHHHHH-SS-SSCE-HHHHHH CS
   EF-hand_5    3 dtFqaiDlNgDGkIskeELkt 23  
                  d+F++ D+NgDG+Isk E+++
  KOO21723.1 2083 DLFREWDANGDGQISKKEFQK 2103
                  78*****************97 PP

  == domain 2  score: 7.3 bits;  conditional E-value: 0.0012
                  HHHHHHH-SS-SSCE-HHHHHHH CS
   EF-hand_5    2 kdtFqaiDlNgDGkIskeELktl 24  
                  +d+F++ D +++G   + EL+++
  KOO21723.1 2118 NDLFDQYDPDKSGVMEFAELQKM 2140
                  89*******************97 PP

>> EF-hand_8  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.1   0.0   4.4e-05      0.13      30      48 ..    2083    2101 ..    2081    2105 .. 0.90
   2 !   22.9   0.1   1.9e-08   5.8e-05       2      51 ..    2093    2140 ..    2092    2143 .. 0.91

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 4.4e-05
   EF-hand_8   30 ilfrefDtdgdGkisfeEF 48  
                  +lfre D +gdG is++EF
  KOO21723.1 2083 DLFREWDANGDGQISKKEF 2101
                  69***************** PP

  == domain 2  score: 22.9 bits;  conditional E-value: 1.9e-08
   EF-hand_8    2 kgkItreelrrilrilglkkglseeevdilfrefDtdgdGkisfeEFcvl 51  
                  +g+I++ e+++++ +lg+   l  ++v +lf+  D d++G+  f E   +
  KOO21723.1 2093 DGQISKKEFQKAMPMLGMD--LPVKAVNDLFDQYDPDKSGVMEFAELQKM 2140
                  8************999*99..*******************9988887655 PP

>> RuBisCO_small  Ribulose bisphosphate carboxylase, small chain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.3       2.3   6.9e+03      25      70 ..     333     378 ..     328     381 .. 0.66
   2 ?   -0.9   0.0      0.54   1.6e+03      12      61 ..     386     442 ..     383     447 .. 0.80
   3 ?    7.1   0.0    0.0018       5.4       7      58 ..     508     566 ..     504     576 .. 0.80
   4 ?    4.5   0.0     0.011        34      12      63 ..     643     701 ..     639     709 .. 0.89
   5 ?    2.1   0.0     0.063   1.9e+02      12      62 ..     883     940 ..     880     946 .. 0.88
   6 ?   -0.0   0.0      0.29   8.7e+02      28      62 ..    1029    1070 ..    1013    1076 .. 0.80
   7 ?   -2.0   0.0       1.2   3.6e+03      13      62 ..    1404    1460 ..    1401    1466 .. 0.78
   8 ?    2.1   0.1     0.063   1.9e+02      12      63 ..    1526    1584 ..    1522    1591 .. 0.82
   9 ?   -4.1   0.3       5.5   1.7e+04      41      70 ..    1729    1757 ..    1726    1760 .. 0.68

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 2.3
                    TT-EEEEEEE-GGGTT-S--EEES---TT---HHHHHHHHHHHHHH CS
  RuBisCO_small  25 qgwapaiEfedkekarnryWtmwklpmfdlkdaaevlaeleecrka 70 
                    +gwa    ++ + ++ ++ ++  kl    +++ ++v++elee+r+a
     KOO21723.1 333 HGWAEEQTHKASMSTAEKLYEETKLREKVEEELRKVYQELEEARQA 378
                    5566666666665555555555666666667788999999999987 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 0.54
                    HHHHHHHHHHHHHTT-EEEEEEE-GGGT.......T-S--EEES---TT---HHHHH CS
  RuBisCO_small  12 deeiakqveyllsqgwapaiEfedkeka.......rnryWtmwklpmfdlkdaaevl 61 
                    ++e+++q+e  l+ + +  iE++++  +        +r W  w+   ++ k+  +vl
     KOO21723.1 386 EAELQRQMEERLAAEKEKRIEHTKEMAIrrigkrdLTRGWVAWSDLYVEKKRRINVL 442
                    578999******************987777777776778888887777776666666 PP

  == domain 3  score: 7.1 bits;  conditional E-value: 0.0018
                    S----HHHHHHHHHHHHHTT-EEEEEEE-GGGT.......T-S--EEES---TT---HH CS
  RuBisCO_small   7 lpdltdeeiakqveyllsqgwapaiEfedkeka.......rnryWtmwklpmfdlkdaa 58 
                       ltdee+++q+e + + + +  iE++++  +        +r W  w+   ++ ++ +
     KOO21723.1 508 GGRLTDEEVQRQIEEVKEAERQKRIEHTKEMAIrrigkrdLTRGWVAWSELYLEQRRRR 566
                    5679*************************988777777766777888877666666655 PP

  == domain 4  score: 4.5 bits;  conditional E-value: 0.011
                    HHHHHHHHHHHHHTT-EEEEEEE-GGGT.......T-S--EEES---TT---HHHHHHH CS
  RuBisCO_small  12 deeiakqveyllsqgwapaiEfedkeka.......rnryWtmwklpmfdlkdaaevlae 63 
                    +ee+++q+e  l+ + +  iE++++  +         r Wt w +p ++ k+ +++l++
     KOO21723.1 643 EEELQRQMEERLAAEKEKRIEHTKEMAIrrigkrdLARGWTAWVTPYLEWKRRERMLKA 701
                    6899*********************88899999887899**********9999988875 PP

  == domain 5  score: 2.1 bits;  conditional E-value: 0.063
                    HHHHHHHHHHHHHTT-EEEEEEE-GGGT.......T-S--EEES---TT---HHHHHH CS
  RuBisCO_small  12 deeiakqveyllsqgwapaiEfedkeka.......rnryWtmwklpmfdlkdaaevla 62 
                    ++e+++q+e  l+ + +  iE++++  +        +r Wt w+   ++ k+ a++l+
     KOO21723.1 883 EAELQRQMEERLAAEKEKRIEHTKEMAIrrigkrdLSRGWTAWSEQHLEKKRRAQMLK 940
                    578999******************988889999877899*****99999999999887 PP

  == domain 6  score: -0.0 bits;  conditional E-value: 0.29
                     EEEEEEE-GGGT.......T-S--EEES---TT---HHHHHH CS
  RuBisCO_small   28 apaiEfedkeka.......rnryWtmwklpmfdlkdaaevla 62  
                     +  iE++++  +        +r Wt w+ + +++++ ++vl 
     KOO21723.1 1029 EKRIEHTKEMAVrrigkrdLTRGWTAWSEGYLEARRRHKVLL 1070
                     56788888877788888777899************9999985 PP

  == domain 7  score: -2.0 bits;  conditional E-value: 1.2
                     HHHHHHHHHHHHTT-EEEEEEE-GGGT.......T-S--EEES---TT---HHHHHH CS
  RuBisCO_small   13 eeiakqveyllsqgwapaiEfedkeka.......rnryWtmwklpmfdlkdaaevla 62  
                     +e+++q++  l+ + +  +E++++  +        +r W  w+   ++ ++++++l+
     KOO21723.1 1404 AELQRQLDEKLRLEKEKRVEHTKEMAVrrvlkrdLSRGWGAWSDMYLQKRRQQSMLK 1460
                     6889999999999999999**999877777777666778888877777777777665 PP

  == domain 8  score: 2.1 bits;  conditional E-value: 0.063
                     HHHHHHHHHHHHHTT-EEEEEEE-GGGT.......T-S--EEES---TT---HHHHHHH CS
  RuBisCO_small   12 deeiakqveyllsqgwapaiEfedkeka.......rnryWtmwklpmfdlkdaaevlae 63  
                     ++ei++q+e  l+++ +  +E++++  +        +r W  w    ++ ++ a+vl++
     KOO21723.1 1526 EAEIQRQMEERLEHEREKRVEHTKQMAVrriakrdLSRGWVAWLDMYLEKTRRARVLMA 1584
                     689*********************98877777776677788887777777777777765 PP

  == domain 9  score: -4.1 bits;  conditional E-value: 5.5
                     -S--EEES---TT---HHHHHHHHHHHHHH CS
  RuBisCO_small   41 nryWtmwklpmfdlkdaaevlaeleecrka 70  
                     +++Wt w+++  ++k a++  +++e+++++
     KOO21723.1 1729 KQWWTDWQVSHAEAK-AESLAEQVERAKRE 1757
                     678999999877665.45566667766665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (2182 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2233  (0.124547); expected 358.6 (0.02)
Passed bias filter:                      383  (0.021362); expected 358.6 (0.02)
Passed Vit filter:                       100  (0.00557756); expected 17.9 (0.001)
Passed Fwd filter:                        51  (0.00284455); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 1.86u 0.33s 00:00:02.19 Elapsed: 00:00:00.60
# Mc/sec: 10928.70
//
Query:       KOO21724.1  [L=1066]
Description: protein sec, partial [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
      5e-13   49.6   0.0    1.2e-12   48.4   0.0    1.7  1  Sec23_BS       Sec23/Sec24 beta-sandwich domain
    1.4e-05   24.8   0.4    3.1e-05   23.7   0.4    1.6  1  Sec23_helical  Sec23/Sec24 helical domain
    1.4e-05   24.6  68.8      0.055   12.8   0.9    9.9 10  DUF3281        Protein of unknown function (DUF3281)
    1.8e-05   25.2   0.0         26    5.4   0.0    7.1 10  DUF3935        Protein of unknown function (DUF3935)
    2.2e-05   24.7   0.0        7.7    6.9   0.0    6.4  7  DUF4160        Domain of unknown function (DUF4160)
    0.00016   21.8   1.9    1.4e+02    2.7   0.0    6.9  7  T2SSI          Type II secretion system (T2SS), protein I
  ------ inclusion threshold ------
      0.018   15.3   0.0      0.071   13.4   0.0    2.1  1  BAMBI          BMP and activin membrane-bound inhibitor (BAMB
      0.081   12.5   0.0       0.27   10.7   0.0    1.9  1  Sec23_trunk    Sec23/Sec24 trunk domain
       0.12   11.3   6.3         59    2.5   0.0    4.9  5  DUF4861        Domain of unknown function (DUF4861)
        1.1    9.0   4.4    2.2e+02    1.6   0.0    5.1  6  TUDOR_5        Histone methyltransferase Tudor domain 1


Domain annotation for each model (and alignments):
>> Sec23_BS  Sec23/Sec24 beta-sandwich domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.4   0.0   6.9e-16   1.2e-12       2      95 ..     273     370 ..     272     371 .. 0.91

  Alignments for each domain:
  == domain 1  score: 48.4 bits;  conditional E-value: 6.9e-16
                 EEEEEEEEE-TTEEEEEEESSSEECSTBESSEESECSESEEEEEEEETT--EEEEEEE...............SSBTCTTSEEEEEEEEEEEETTSEEE CS
    Sec23_BS   2 fnatlevrtSkelkvsgliGncvslsnvsekeiGeggtsewklcsldpdstlavyfdi...............deklksgkqayiQfatlYthssgerr 85 
                  +++++vrtS +lkv++li   ++           +    ++l+s ++d+tla+++ +                + + s+++++iQ+a+lYt ++g rr
  KOO21724.1 273 TEGVFRVRTSAGLKVTNLISRETEAD---------STV--VNLPSAQRDTTLALELAHastpsgsaakdkssaPSAVLSADRVFIQTALLYTAPDGGRR 360
                 6899***************9999987.........556..9***************************999874467889******************* PP

                 EEEEEEEEEE CS
    Sec23_BS  86 lRVttvalpv 95 
                 +RV t +l+v
  KOO21724.1 361 IRVLTRPLRV 370
                 *****99876 PP

>> Sec23_helical  Sec23/Sec24 helical domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.7   0.4   1.7e-08   3.1e-05       4      74 ..     385     457 ..     382     460 .. 0.92

  Alignments for each domain:
  == domain 1  score: 23.7 bits;  conditional E-value: 1.7e-08
                    HHHHHHHHHHHHHTTTS-HHHHHHHHHHHHHHHHHHHHHH----..---------GGGTTHHHHHHHHHTSTT CS
  Sec23_helical   4 avtvllakqaidkalesgladarealdtslvdllsayrkvgasg..sspsqlqlpeslklLPlyilallKspa 74 
                    av++llak++ +++ +   +++ e +++ ++ ll a r  + +   +   ++ l + l+lLPl++la+lK p 
     KOO21724.1 385 AVAALLAKRCAERLATTAASKVAELVQEECAALLLAMRPLCPPPlrRTETEILLTKPLELLPLLTLAILKLPP 457
                    99*************99************************9889766677899999*************886 PP

>> DUF3281  Protein of unknown function (DUF3281)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.9   1.0   0.00012      0.21     119     174 ..     488     544 ..     479     546 .. 0.90
   2 !   12.8   0.9   3.1e-05     0.055     120     174 ..     546     601 ..     543     603 .. 0.91
   3 !    6.1   1.1    0.0035       6.2     120     160 ..     603     643 ..     600     658 .. 0.88
   4 ?    4.5   1.8      0.01        19     118     160 ..     660     702 ..     649     720 .. 0.82
   5 !    5.2   1.6    0.0062        11     116     154 ..     717     755 ..     707     779 .. 0.83
   6 ?    2.6   0.8     0.039        70     118     160 ..     778     820 ..     766     835 .. 0.85
   7 ?    4.5   1.8      0.01        18     118     160 ..     837     879 ..     825     897 .. 0.82
   8 !    8.0   1.1   0.00087       1.6     117     161 ..     895     939 ..     887     953 .. 0.85
   9 !    5.3   0.4    0.0058        10     119     154 ..     956     991 ..     941     997 .. 0.85
  10 !    8.8   1.0   0.00052      0.92     119     160 ..     999    1040 ..     994    1065 .. 0.80

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00012
     DUF3281 119 qvgsnsisvsgtitvngktvnlastvppvtvdtiqvadshvfq.sgtlpagltigdl 174
                   gs s+  +g++ v g ++ +  tv p ++d ++    hv    g +pa lt g +
  KOO21724.1 488 AYGSSSVNATGSVDVSGSSMAVHGTVIPTAIDWMETLGVHVQAgYGQFPASLTQGTI 544
                 679*************************************9752599******9865 PP

  == domain 2  score: 12.8 bits;  conditional E-value: 3.1e-05
     DUF3281 120 vgsnsisvsgtitvngktvnlastvppvtvdtiqvadshvf.qsgtlpagltigdl 174
                  gs s+  +gt+ v g ++ +  tv p ++d ++    hv  + g +pa lt g +
  KOO21724.1 546 YGSSSVDATGTVDVSGSSMAVHGTVIPTAIDWMETLGVHVQaDYGQFPASLTQGTI 601
                 69**************************************72579*******9865 PP

  == domain 3  score: 6.1 bits;  conditional E-value: 0.0035
     DUF3281 120 vgsnsisvsgtitvngktvnlastvppvtvdtiqvadshvf 160
                  gs s+  +gt+ v g ++ +  tv p ++d ++    hv 
  KOO21724.1 603 YGSSSVDATGTVDVSGSSMAVHGTVIPTAIDWMETLGVHVQ 643
                 69*****************************9999888884 PP

  == domain 4  score: 4.5 bits;  conditional E-value: 0.01
     DUF3281 118 lqvgsnsisvsgtitvngktvnlastvppvtvdtiqvadshvf 160
                 +  gs s+  +g++ v   ++ + stv p ++d ++    hv 
  KOO21724.1 660 IAYGSSSVNATGSVDVSSSSMAVHSTVIPTAIDWMETLGVHVQ 702
                 6679*****************************9999999985 PP

  == domain 5  score: 5.2 bits;  conditional E-value: 0.0062
     DUF3281 116 fnlqvgsnsisvsgtitvngktvnlastvppvtvdtiqv 154
                   +  gs s+  +gt+ v g ++ +  tv p ++d ++ 
  KOO21724.1 717 GTIAYGSSSVNATGTVDVSGSSMAVHGTVIPTAIDWMET 755
                 56778****************************997765 PP

  == domain 6  score: 2.6 bits;  conditional E-value: 0.039
     DUF3281 118 lqvgsnsisvsgtitvngktvnlastvppvtvdtiqvadshvf 160
                 +  gs s+  +g++ v   ++ +  tv p ++d ++    hv 
  KOO21724.1 778 IAYGSSSVNATGSVDVSSSSMAVHGTVIPFAIDWMETLGVHVQ 820
                 5679*****************************9999888884 PP

  == domain 7  score: 4.5 bits;  conditional E-value: 0.01
     DUF3281 118 lqvgsnsisvsgtitvngktvnlastvppvtvdtiqvadshvf 160
                 +  gs s+  +g++ v   ++ + stv p ++d ++    hv 
  KOO21724.1 837 IAYGSSSVNATGSVDVSSSSMAVHSTVIPTAIDWMETLGVHVQ 879
                 6679*****************************9999999985 PP

  == domain 8  score: 8.0 bits;  conditional E-value: 0.00087
     DUF3281 117 nlqvgsnsisvsgtitvngktvnlastvppvtvdtiqvadshvfq 161
                  +  gs s+  +gt+ v g ++ +  tv p ++d ++    hv  
  KOO21724.1 895 TIAYGSSSVNATGTVDVSGSSMAVHGTVIPTAIDWMETLGVHVHA 939
                 5778*******************************9999999864 PP

  == domain 9  score: 5.3 bits;  conditional E-value: 0.0058
     DUF3281 119 qvgsnsisvsgtitvngktvnlastvppvtvdtiqv 154
                   gs s+  +gt+ v g ++ +  tv p ++d ++ 
  KOO21724.1 956 AYGSSSVDATGTVDVSGSSMAVHGTVIPFAIDWMET 991
                 5799**************************997765 PP

  == domain 10  score: 8.8 bits;  conditional E-value: 0.00052
     DUF3281  119 qvgsnsisvsgtitvngktvnlastvppvtvdtiqvadshvf 160 
                    gs s+  +gt+ v g ++ +  tv p+++d ++    hv 
  KOO21724.1  999 AYGSSSVNATGTVDVSGSSMAVHGTVVPIAIDWMETLGLHVQ 1040
                  579*****************************9999999984 PP

>> DUF3935  Protein of unknown function (DUF3935)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.0       4.2   7.5e+03       6      27 ..     509     530 ..     508     533 .. 0.84
   2 ?   -1.2   0.0       1.7     3e+03       6      29 ..     566     589 ..     564     593 .. 0.87
   3 ?    1.2   0.0      0.31   5.5e+02       6      31 ..     623     648 ..     621     656 .. 0.89
   4 ?   -1.0   0.0       1.5   2.7e+03      10      31 ..     686     707 ..     681     710 .. 0.82
   5 ?    4.4   0.0     0.031        55       6      31 ..     741     766 ..     739     776 .. 0.89
   6 ?    5.4   0.0     0.015        26       6      31 ..     800     825 ..     797     834 .. 0.91
   7 ?   -1.0   0.0       1.5   2.7e+03      10      31 ..     863     884 ..     858     887 .. 0.82
   8 ?    1.3   0.0      0.29   5.3e+02       6      29 ..     918     941 ..     916     949 .. 0.91
   9 ?   -2.7   0.0       5.1   9.2e+03       6      23 ..     977     994 ..     976     997 .. 0.85
  10 ?   -3.6   0.0       9.5   1.7e+04       6      28 ..    1020    1042 ..    1019    1043 .. 0.80

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 4.2
     DUF3935   6 vfGiilsffvfwfsvlGvqrfa 27 
                 v G ++   + w+  lGv   a
  KOO21724.1 509 VHGTVIPTAIDWMETLGVHVQA 530
                 6788999999*******98766 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 1.7
     DUF3935   6 vfGiilsffvfwfsvlGvqrfaef 29 
                 v G ++   + w+  lGv   a++
  KOO21724.1 566 VHGTVIPTAIDWMETLGVHVQADY 589
                 678999999*********988876 PP

  == domain 3  score: 1.2 bits;  conditional E-value: 0.31
     DUF3935   6 vfGiilsffvfwfsvlGvqrfaefld 31 
                 v G ++   + w+  lGv   ae+ d
  KOO21724.1 623 VHGTVIPTAIDWMETLGVHVQAEYGD 648
                 678999999*************9865 PP

  == domain 4  score: -1.0 bits;  conditional E-value: 1.5
     DUF3935  10 ilsffvfwfsvlGvqrfaefld 31 
                 ++   + w+  lGv   ae+ d
  KOO21724.1 686 VIPTAIDWMETLGVHVQAEYGD 707
                 5666789***********9865 PP

  == domain 5  score: 4.4 bits;  conditional E-value: 0.031
     DUF3935   6 vfGiilsffvfwfsvlGvqrfaefld 31 
                 v G ++   + w+  lGvq  ae+ d
  KOO21724.1 741 VHGTVIPTAIDWMETLGVQVQAEYGD 766
                 678999999**************966 PP

  == domain 6  score: 5.4 bits;  conditional E-value: 0.015
     DUF3935   6 vfGiilsffvfwfsvlGvqrfaefld 31 
                 v G ++ f + w+  lGv   ae+ d
  KOO21724.1 800 VHGTVIPFAIDWMETLGVHVQAEYGD 825
                 7899******************9865 PP

  == domain 7  score: -1.0 bits;  conditional E-value: 1.5
     DUF3935  10 ilsffvfwfsvlGvqrfaefld 31 
                 ++   + w+  lGv   ae+ d
  KOO21724.1 863 VIPTAIDWMETLGVHVQAEYGD 884
                 5666789***********9865 PP

  == domain 8  score: 1.3 bits;  conditional E-value: 0.29
     DUF3935   6 vfGiilsffvfwfsvlGvqrfaef 29 
                 v G ++   + w+  lGv   ae+
  KOO21724.1 918 VHGTVIPTAIDWMETLGVHVHAEY 941
                 678999999*************97 PP

  == domain 9  score: -2.7 bits;  conditional E-value: 5.1
     DUF3935   6 vfGiilsffvfwfsvlGv 23 
                 v G ++ f + w+  l v
  KOO21724.1 977 VHGTVIPFAIDWMETLAV 994
                 679999******999877 PP

  == domain 10  score: -3.6 bits;  conditional E-value: 9.5
     DUF3935    6 vfGiilsffvfwfsvlGvqrfae 28  
                  v G ++ + + w+  lG+    e
  KOO21724.1 1020 VHGTVVPIAIDWMETLGLHVQVE 1042
                  67889999999*****9876655 PP

>> DUF4160  Domain of unknown function (DUF4160)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.2   0.0      0.12   2.2e+02      16      40 ..     640     664 ..     635     672 .. 0.86
   2 ?    0.7   0.0      0.38   6.7e+02      16      40 ..     699     723 ..     695     730 .. 0.84
   3 ?   -3.6   0.0       8.2   1.5e+04      18      40 ..     760     782 ..     759     786 .. 0.83
   4 ?    2.4   0.0      0.11   2.1e+02      16      40 ..     817     841 ..     808     849 .. 0.86
   5 ?    0.7   0.0      0.38   6.7e+02      16      40 ..     876     900 ..     872     907 .. 0.84
   6 !    6.9   0.0    0.0043       7.7      16      40 ..     935     959 ..     930     965 .. 0.89
   7 ?   -0.4   0.0      0.86   1.5e+03      17      40 ..    1038    1061 ..    1034    1065 .. 0.88

  Alignments for each domain:
  == domain 1  score: 2.2 bits;  conditional E-value: 0.12
     DUF4160  16 pHvHvkyggdeakiwledvellegs 40 
                 +Hv ++yg+d   ++l+++++++gs
  KOO21724.1 640 VHVQAEYGDDPFAVSLTQGTIAYGS 664
                 58888***********99****994 PP

  == domain 2  score: 0.7 bits;  conditional E-value: 0.38
     DUF4160  16 pHvHvkyggdeakiwledvellegs 40 
                 +Hv ++yg+d    +l+++++++gs
  KOO21724.1 699 VHVQAEYGDDPYAASLTQGTIAYGS 723
                 58888****9999***889999994 PP

  == domain 3  score: -3.6 bits;  conditional E-value: 8.2
     DUF4160  18 vHvkyggdeakiwledvellegs 40 
                 v ++yg++   ++l+++++++gs
  KOO21724.1 760 VQAEYGDNPFAVSLTQGTIAYGS 782
                 5578999999999*889999994 PP

  == domain 4  score: 2.4 bits;  conditional E-value: 0.11
     DUF4160  16 pHvHvkyggdeakiwledvellegs 40 
                 +Hv ++yg+d   ++l+++++++gs
  KOO21724.1 817 VHVQAEYGDDPFAVSLTQGTIAYGS 841
                 58888***********99****994 PP

  == domain 5  score: 0.7 bits;  conditional E-value: 0.38
     DUF4160  16 pHvHvkyggdeakiwledvellegs 40 
                 +Hv ++yg+d    +l+++++++gs
  KOO21724.1 876 VHVQAEYGDDPYAASLTQGTIAYGS 900
                 58888****9999***889999994 PP

  == domain 6  score: 6.9 bits;  conditional E-value: 0.0043
     DUF4160  16 pHvHvkyggdeakiwledvellegs 40 
                 +HvH++yg d   ++l ++++++gs
  KOO21724.1 935 VHVHAEYGADPFAVSLSQGTIAYGS 959
                 6***************88***9994 PP

  == domain 7  score: -0.4 bits;  conditional E-value: 0.86
     DUF4160   17 HvHvkyggdeakiwledvellegs 40  
                  Hv v+yg d    +l+++++++gs
  KOO21724.1 1038 HVQVEYGADPFAASLTQGTIAYGS 1061
                  9999****99*****889999994 PP

>> T2SSI  Type II secretion system (T2SS), protein I
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.2   0.0      0.62   1.1e+03      29      64 ..     495     530 ..     488     543 .. 0.82
   2 ?    1.2   0.0      0.24   4.3e+02      29      67 ..     552     591 ..     544     600 .. 0.82
   3 ?    1.4   0.0       0.2   3.5e+02      29      75 ..     609     655 ..     603     658 .. 0.84
   4 ?    1.8   0.0      0.15   2.7e+02      29      76 ..     668     715 ..     663     717 .. 0.86
   5 ?    2.7   0.0     0.081   1.4e+02      29      71 ..     727     769 ..     722     775 .. 0.82
   6 ?    1.9   0.0      0.15   2.6e+02      29      76 ..     845     892 ..     838     894 .. 0.86
   7 ?    2.1   0.0      0.12   2.1e+02      29      75 ..     904     950 ..     899     952 .. 0.85

  Alignments for each domain:
  == domain 1  score: -0.2 bits;  conditional E-value: 0.62
                 EEEEEEEETTEEEEEEEEEEE-SSTTEEEEEEEEES CS
       T2SSI  29 esegevemagrrWywrveveatadpglrrvevsVaa 64 
                 +++g+v+  g    ++ +v +ta + +  + v V a
  KOO21724.1 495 NATGSVDVSGSSMAVHGTVIPTAIDWMETLGVHVQA 530
                 67999**********************999999983 PP

  == domain 2  score: 1.2 bits;  conditional E-value: 0.24
                 EEEEEEEETTEEEEEEEEEEE-SSTTEEEEEEEEESSS.H CS
       T2SSI  29 esegevemagrrWywrveveatadpglrrvevsVaadk.e 67 
                 +++g+v+  g    ++ +v +ta + +  + v V ad  +
  KOO21724.1 552 DATGTVDVSGSSMAVHGTVIPTAIDWMETLGVHVQADYgQ 591
                 6799******************************955433 PP

  == domain 3  score: 1.4 bits;  conditional E-value: 0.2
                 EEEEEEEETTEEEEEEEEEEE-SSTTEEEEEEEEESSSHCCH-SEEE CS
       T2SSI  29 esegevemagrrWywrveveatadpglrrvevsVaadkeeerplasl 75 
                 +++g+v+  g    ++ +v +ta + +  + v V a+  ++  ++sl
  KOO21724.1 609 DATGTVDVSGSSMAVHGTVIPTAIDWMETLGVHVQAEYGDDPFAVSL 655
                 6799******************************9665666655555 PP

  == domain 4  score: 1.8 bits;  conditional E-value: 0.15
                 EEEEEEEETTEEEEEEEEEEE-SSTTEEEEEEEEESSSHCCH-SEEEE CS
       T2SSI  29 esegevemagrrWywrveveatadpglrrvevsVaadkeeerplaslr 76 
                 +++g+v+       ++++v +ta + +  + v V a+  ++  +asl+
  KOO21724.1 668 NATGSVDVSSSSMAVHSTVIPTAIDWMETLGVHVQAEYGDDPYAASLT 715
                 56889999999999*********************7667777777776 PP

  == domain 5  score: 2.7 bits;  conditional E-value: 0.081
                 EEEEEEEETTEEEEEEEEEEE-SSTTEEEEEEEEESSSHCCH- CS
       T2SSI  29 esegevemagrrWywrveveatadpglrrvevsVaadkeeerp 71 
                 +++g+v+  g    ++ +v +ta + +  + v+V a+  +   
  KOO21724.1 727 NATGTVDVSGSSMAVHGTVIPTAIDWMETLGVQVQAEYGDNPF 769
                 6799******************************965444444 PP

  == domain 6  score: 1.9 bits;  conditional E-value: 0.15
                 EEEEEEEETTEEEEEEEEEEE-SSTTEEEEEEEEESSSHCCH-SEEEE CS
       T2SSI  29 esegevemagrrWywrveveatadpglrrvevsVaadkeeerplaslr 76 
                 +++g+v+       ++++v +ta + +  + v V a+  ++  +asl+
  KOO21724.1 845 NATGSVDVSSSSMAVHSTVIPTAIDWMETLGVHVQAEYGDDPYAASLT 892
                 57889999999999*********************7667777777776 PP

  == domain 7  score: 2.1 bits;  conditional E-value: 0.12
                 EEEEEEEETTEEEEEEEEEEE-SSTTEEEEEEEEESSSHCCH-SEEE CS
       T2SSI  29 esegevemagrrWywrveveatadpglrrvevsVaadkeeerplasl 75 
                 +++g+v+  g    ++ +v +ta + +  + v V+a+  ++  ++sl
  KOO21724.1 904 NATGTVDVSGSSMAVHGTVIPTAIDWMETLGVHVHAEYGADPFAVSL 950
                 6799*******************************666666666666 PP

>> BAMBI  BMP and activin membrane-bound inhibitor (BAMBI) N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.0     4e-05     0.071      12      67 ..      15      69 ..       9      98 .. 0.85

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 4e-05
       BAMBI 12 elcamavlltkgeircycdaahcvatgymckselnacftrvldpqntnsplthgcl 67
                 l + a   + g +r+ycdaa +va   ++ sel    t +  p+ t  pl+h  +
  KOO21724.1 15 ALETSAAAYASGAVRAYCDAA-VVALESLAASELVDSETLLTLPKHTPPPLSHVSV 69
                44445556789********98.7999***************************765 PP

>> Sec23_trunk  Sec23/Sec24 trunk domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   0.00015      0.27     171     228 ..     182     242 ..      97     249 .. 0.86

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00015
                  CHSCSSSCHHHHHHHHHHHCTEEEEEEEEC...SS--SHHHHTHHHHTTT-EEEEETTTCC CS
  Sec23_trunk 171 klvkkadkfYkkLakecvkqgisvDlFlfs...ldyvdlaelkqlaeltgGqvvlydsFsa 228
                  +l++++      La +c +  ++v l l++   +++vd a+l  la +tgG+ +l+d+F a
   KOO21724.1 182 RLTRAEAPQIRDLARKCLAASVTVHLCLAPardDAFVDAASLAPLAWVTGGEWLLADEFGA 242
                  556666667789**************998733358************************85 PP

>> DUF4861  Domain of unknown function (DUF4861)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.5   0.0     0.033        59     163     183 ..     639     659 ..     626     680 .. 0.81
   2 ?    1.7   0.0     0.057     1e+02     163     183 ..     698     718 ..     680     731 .. 0.78
   3 ?    2.2   0.0     0.038        68     164     183 ..     817     836 ..     802     855 .. 0.84
   4 ?    1.8   0.0     0.053        95     163     183 ..     875     895 ..     853     910 .. 0.79
   5 ?    0.7   0.1      0.11     2e+02     163     183 ..     934     954 ..     917     967 .. 0.82

  Alignments for each domain:
  == domain 1  score: 2.5 bits;  conditional E-value: 0.033
     DUF4861 163 syHvdagwGmDvlkVGpslGl 183
                   Hv+a++G+D+++V  + G 
  KOO21724.1 639 GVHVQAEYGDDPFAVSLTQGT 659
                 57*************998886 PP

  == domain 2  score: 1.7 bits;  conditional E-value: 0.057
     DUF4861 163 syHvdagwGmDvlkVGpslGl 183
                   Hv+a++G+D++++  + G 
  KOO21724.1 698 GVHVQAEYGDDPYAASLTQGT 718
                 67***********99877775 PP

  == domain 3  score: 2.2 bits;  conditional E-value: 0.038
     DUF4861 164 yHvdagwGmDvlkVGpslGl 183
                  Hv+a++G+D+++V  + G 
  KOO21724.1 817 VHVQAEYGDDPFAVSLTQGT 836
                 6*************998886 PP

  == domain 4  score: 1.8 bits;  conditional E-value: 0.053
     DUF4861 163 syHvdagwGmDvlkVGpslGl 183
                   Hv+a++G+D++++  + G 
  KOO21724.1 875 GVHVQAEYGDDPYAASLTQGT 895
                 67***********99877775 PP

  == domain 5  score: 0.7 bits;  conditional E-value: 0.11
     DUF4861 163 syHvdagwGmDvlkVGpslGl 183
                   Hv a++G D+++V  s G 
  KOO21724.1 934 GVHVHAEYGADPFAVSLSQGT 954
                 57*************988885 PP

>> TUDOR_5  Histone methyltransferase Tudor domain 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.8   0.0      0.23   4.1e+02       3      33 ..     638     668 ..     637     670 .. 0.85
   2 ?    0.2   0.0      0.35   6.2e+02       3      33 ..     697     727 ..     696     729 .. 0.85
   3 ?    1.6   0.0      0.13   2.2e+02       3      33 ..     756     786 ..     755     788 .. 0.86
   4 ?    0.8   0.0      0.23   4.1e+02       3      33 ..     815     845 ..     814     847 .. 0.85
   5 ?    0.2   0.0      0.35   6.2e+02       3      33 ..     874     904 ..     873     906 .. 0.85
   6 ?   -2.4   0.0       2.2   3.9e+03       3      26 ..     933     956 ..     932     960 .. 0.88

  Alignments for each domain:
  == domain 1  score: 0.8 bits;  conditional E-value: 0.23
     TUDOR_5   3 vGtRviAkykdekkkskyyaGiiAEppkktN 33 
                 +G  v A y d+ ++ ++ +G iA   ++ N
  KOO21724.1 638 LGVHVQAEYGDDPFAVSLTQGTIAYGSSSVN 668
                 79999****9999**********97666655 PP

  == domain 2  score: 0.2 bits;  conditional E-value: 0.35
     TUDOR_5   3 vGtRviAkykdekkkskyyaGiiAEppkktN 33 
                 +G  v A y d+  + ++ +G iA   ++ N
  KOO21724.1 697 LGVHVQAEYGDDPYAASLTQGTIAYGSSSVN 727
                 79999****9999**********97666655 PP

  == domain 3  score: 1.6 bits;  conditional E-value: 0.13
     TUDOR_5   3 vGtRviAkykdekkkskyyaGiiAEppkktN 33 
                 +G  v A y d+ ++ ++ +G iA   ++ N
  KOO21724.1 756 LGVQVQAEYGDNPFAVSLTQGTIAYGSSSVN 786
                 7999*******************97666655 PP

  == domain 4  score: 0.8 bits;  conditional E-value: 0.23
     TUDOR_5   3 vGtRviAkykdekkkskyyaGiiAEppkktN 33 
                 +G  v A y d+ ++ ++ +G iA   ++ N
  KOO21724.1 815 LGVHVQAEYGDDPFAVSLTQGTIAYGSSSVN 845
                 79999****9999**********97666655 PP

  == domain 5  score: 0.2 bits;  conditional E-value: 0.35
     TUDOR_5   3 vGtRviAkykdekkkskyyaGiiAEppkktN 33 
                 +G  v A y d+  + ++ +G iA   ++ N
  KOO21724.1 874 LGVHVQAEYGDDPYAASLTQGTIAYGSSSVN 904
                 79999****9999**********97666655 PP

  == domain 6  score: -2.4 bits;  conditional E-value: 2.2
     TUDOR_5   3 vGtRviAkykdekkkskyyaGiiA 26 
                 +G  v A y  + ++ ++ +G iA
  KOO21724.1 933 LGVHVHAEYGADPFAVSLSQGTIA 956
                 799999***888899999999998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1066 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       411  (0.0229238); expected 358.6 (0.02)
Passed bias filter:                      217  (0.0121033); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.77u 0.30s 00:00:01.07 Elapsed: 00:00:00.47
# Mc/sec: 6877.32
//
Query:       KOO21725.1  [L=477]
Description: gamma tubulin [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
      9e-57  192.5   0.0    1.3e-56  192.0   0.0    1.2  1  Tubulin      Tubulin/FtsZ family, GTPase domain
    4.1e-44  149.8   0.0    1.2e-43  148.3   0.0    1.8  1  Tubulin_C    Tubulin C-terminal domain
     0.0028   16.9   0.0     0.0046   16.2   0.0    1.3  1  Tubulin_2    Tubulin like
  ------ inclusion threshold ------
      0.077   13.5   0.1       0.18   12.4   0.1    1.6  1  Hrs_helical  Hepatocyte growth factor-regulated tyrosine kina


Domain annotation for each model (and alignments):
>> Tubulin  Tubulin/FtsZ family, GTPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  192.0   0.0   2.8e-60   1.3e-56      17     196 ..       3     196 ..       1     197 [. 0.97

  Alignments for each domain:
  == domain 1  score: 192.0 bits;  conditional E-value: 2.8e-60
                 HHHH...HHHCH..............HHHT.....TTEEEEE....EEESBHHHHHTS-GS.......EEEE--CCC..CTTC--TT-HHHHHHHHHHT CS
     Tubulin  17 elwellakehgiqsdg..........dslesfFsesgkveyiprsvaidtdpqvlneikags.elfnpnklllgkeg..agnngaggypevgkeaaeei 102
                 e+w++l+ ehgi+++g          d++++fF++ ++++yiprs++id++p+vl++++a+  +lfn++++    eg  agnn+a+gy   g +++eei
  KOO21725.1   3 EFWKQLCLEHGISKNGiledfathggDRKDVFFYQADDQQYIPRSLLIDLEPRVLSHVQAELpRLFNQENIYQHPEGggAGNNWANGYDI-GGQVQEEI 100
                 79**********9888************************************************************999********998.999***** PP

                 HHHHHHHHTT-SE.SEEEEEEETTSSHHHHHHHHHHHHHHHTSTTSEEEEEEEE--..GG.G-HHHHHHHHHHHHHHHHT-SEEEEEEHHHHHCCS CS
     Tubulin 103 leeirkevekcdslqgffitaslgGGTGSGlgpvilevlkeeypkalvvtvvvlPs..efsevvvepynailalkelieesdavividNdaLlkil 196
                 +++i++e+++++sl+gf++t+s++GGTGSG+g+ +le++++ +pk+l++t++v+P+  +  +vvv+pyn++l+lk+l  ++dav+v+dN aL++i+
  KOO21725.1 101 MDMIDREADGSESLEGFIMTHSIAGGTGSGMGSRMLEAINDHFPKKLIQTYSVFPNnqDGGDVVVQPYNSLLTLKRLTLNADAVVVLDNTALNRIA 196
                 ********************************************************886679*******************************996 PP

>> Tubulin_C  Tubulin C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  148.3   0.0   2.6e-47   1.2e-43       1     125 [.     246     385 ..     246     386 .. 0.94

  Alignments for each domain:
  == domain 1  score: 148.3 bits;  conditional E-value: 2.6e-47
                 TTC-EEEEEEESSSCTT.............TTTCS-HHHHHHHHHTCSGGGBSSSTSTTT..SSEEEEEEEEEESSSHHHHHHHHHHHHHTTTS-BSTT CS
   Tubulin_C   1 PrlhFlltsyaPlvsae.............kaavektsvqdvtrallepknimvkvdprk..gkylaiallirGdvepkevnkavqrikekkkaqfveW 84 
                 PrlhFl+t+y+Pl+ +                av+ktsv dv+r+ll++knimv++ +rk  g+y++i+ +i+G+v+p++v+k++qri+e++  +f++W
  KOO21725.1 246 PRLHFLMTGYTPLMLDGptstaaaqggaaaPLAVRKTSVMDVMRRLLQTKNIMVSCATRKdrGCYISILDIIQGEVDPTQVHKSLQRIRERQLCSFIPW 344
                 9************998877777766765444579***********************99989************************************* PP

                 STTTEEEEEEECECT-TTTSSCEEEEEEEEGGGHHHHHHHH CS
   Tubulin_C  85 iptgikvalnkkspyvkkqskvsvlmlaNttsiaelfkrll 125
                 +p++i+val+++spyvk+ ++vs+lmlaN+tsi++lf+r++
  KOO21725.1 345 GPASIQVALSRRSPYVKTPHRVSGLMLANHTSIRDLFQRIC 385
                 ***************************************97 PP

>> Tubulin_2  Tubulin like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.0     1e-06    0.0046     134     189 ..      95     148 ..      87     179 .. 0.79

  Alignments for each domain:
  == domain 1  score: 16.2 bits;  conditional E-value: 1e-06
   Tubulin_2 134 eirealrdaikrlrgsageeeglnvfVvgSLaGGTGSGiflDvayllrkilkeekq 189
                 +++e++ d i+r +++  +e++  ++   S+aGGTGSG+   ++  +++ ++++  
  KOO21725.1  95 QVQEEIMDMIDREADG--SESLEGFIMTHSIAGGTGSGMGSRMLEAINDHFPKKLI 148
                 6777888888887773..35555677778************999999999998873 PP

>> Hrs_helical  Hepatocyte growth factor-regulated tyrosine kinase substrate
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.1     4e-05      0.18      24      87 ..     368     430 ..     363     433 .. 0.87

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 4e-05
  Hrs_helical  24 GrsianDsavqslFqkltamhsqllkriqeqeekraeyeslqdklaqikearealdalreehke 87 
                  G  +an +++++lFq++ +   +l kr + +++ r ++  + d+l++  +are  ++l ee+++
   KOO21725.1 368 GLMLANHTSIRDLFQRICQQYDKLRKRDAFLDNFR-KVAMFADDLSEFDDAREIAQDLFEEYRA 430
                  78899**************9999888777776666.6889*************99999999985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (477 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       496  (0.0276647); expected 358.6 (0.02)
Passed bias filter:                      467  (0.0260472); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.51u 0.25s 00:00:00.76 Elapsed: 00:00:00.40
# Mc/sec: 3609.84
//
Query:       KOO21726.1  [L=626]
Description: hypothetical protein Ctob_000905 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.5e-13   51.1   0.0    3.7e-07   30.7   0.0    2.2  2  Ank_2      Ankyrin repeats (3 copies)
    2.2e-11   43.6   0.9    0.00056   20.2   0.0    4.5  4  Ank        Ankyrin repeat
    2.5e-09   37.2   0.1    7.2e-07   29.4   0.0    2.7  2  Ank_5      Ankyrin repeats (many copies)
    4.4e-08   32.8   0.2    6.4e-06   26.1   0.0    3.2  3  Ank_3      Ankyrin repeat
      1e-06   29.1   0.0    4.6e-05   23.9   0.0    2.6  2  Ank_4      Ankyrin repeats (many copies)
    5.6e-05   22.5   0.7    0.00058   19.2   0.4    2.5  2  EF-hand_5  EF hand
    6.8e-05   23.2   3.6     0.0064   16.9   0.3    2.3  2  EF-hand_7  EF-hand domain pair
    0.00012   21.7   0.3     0.0076   16.1   0.1    2.6  2  EF-hand_6  EF-hand domain
     0.0012   18.2   0.9     0.0038   16.7   0.1    2.2  3  EF-hand_1  EF hand
  ------ inclusion threshold ------
      0.017   15.0   0.1      0.055   13.3   0.1    1.8  1  EF-hand_8  EF-hand domain pair


Domain annotation for each model (and alignments):
>> Ank_2  Ankyrin repeats (3 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.7   0.0     2e-10   3.7e-07      20      79 ..     362     432 ..     343     436 .. 0.76
   2 !   26.9   0.0   3.1e-09   5.6e-06       1      64 [.     372     451 ..     372     469 .. 0.77

  Alignments for each domain:
  == domain 1  score: 30.7 bits;  conditional E-value: 2e-10
       Ank_2  20 adpnk.ngktaLhyAakngnleivklLleh.......adndgrtpLhyAars...g.hleivklLlekgadi 79 
                 ad  k  g+t L+ Aa++g++ +v+ Lle        ++  g t+Lhy a +   g h ++++lLl+  a++
  KOO21726.1 362 ADS-KgRGETLLMRAARYGHVPVVRELLERgadvglaTRGMGFTALHYGAICfnpGaHADVLELLLQARAEP 432
                 232.3599********************9775556544488*****9966666663699*******877776 PP

  == domain 2  score: 26.9 bits;  conditional E-value: 3.1e-09
       Ank_2   1 LhlAakngnlelvklLl.egadpn..k..ngktaLhyAakn...g.nleivklLleh......adndgrtpLhyAars.g 64 
                 L+ Aa++g+ ++v+ Ll  gad++  +   g taLhy a+    g + ++++lLl++      +++ grt+L  ++   g
  KOO21726.1 372 LMRAARYGHVPVVRELLeRGADVGlaTrgMGFTALHYGAICfnpGaHADVLELLLQAraepgaLNCFGRTALEESVLAfG 451
                 899*****99*******999**9986368999****877743343488999****966677777899*****98876555 PP

>> Ank  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.5   0.0      0.27   4.8e+02       2       9 ..     158     167 ..     157     200 .. 0.79
   2 !   20.2   0.0   3.1e-07   0.00056       2      27 ..     368     394 ..     367     399 .. 0.91
   3 !   16.2   0.1     6e-06     0.011       1      31 [.     401     436 ..     401     437 .. 0.75
   4 ?   -0.6   0.0       1.2   2.2e+03      19      30 ..     458     468 ..     457     468 .. 0.87

  Alignments for each domain:
  == domain 1  score: 1.5 bits;  conditional E-value: 0.27
                 SBBHHHH..H CS
         Ank   2 GnTPLHl..A 9  
                 GnT LHl  A
  KOO21726.1 158 GNTFLHLvrA 167
                 9*****8332 PP

  == domain 2  score: 20.2 bits;  conditional E-value: 3.1e-07
                 SBBHHHHHHHHTTHHHHHHHH.TTTST CS
         Ank   2 GnTPLHlAatngkkriiklLL.hGAnl 27 
                 G T L++Aa++g++ ++++LL +GA++
  KOO21726.1 368 GETLLMRAARYGHVPVVRELLeRGADV 394
                 99*******************99***8 PP

  == domain 3  score: 16.2 bits;  conditional E-value: 6e-06
                 TSBBHHHH.HH...HHTT..HHHHHHHH.TTTSTTCBT CS
         Ank   1 dGnTPLHl.Aa...tngk..kriiklLL.hGAnlnald 31 
                 +G+T+LH+ A+      +  +++++lLL  +A++ al+
  KOO21726.1 401 MGFTALHYgAIcfnP--GahADVLELLLqARAEPGALN 436
                 6******95446542..14578******559**99988 PP

  == domain 4  score: -0.6 bits;  conditional E-value: 1.2
                 HHHHTTTSTTCB CS
         Ank  19 klLLhGAnlnal 30 
                 +lLL GA ++a+
  KOO21726.1 458 QLLL-GATPDAQ 468
                 79**.***9996 PP

>> Ank_5  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.4   0.0     4e-10   7.2e-07      14      55 ..     366     408 ..     354     408 .. 0.91
   2 ?    4.9   0.0      0.02        35      28      54 ..     418     444 ..     414     445 .. 0.93

  Alignments for each domain:
  == domain 1  score: 29.4 bits;  conditional E-value: 4e-10
       Ank_5  14 gggntpLhvAakygaadvvrlLlargadlnltdsrG.ltaldl 55 
                 g+g+t L+ Aa+yg+ +vvr+Ll+rgad +l +     tal++
  KOO21726.1 366 GRGETLLMRAARYGHVPVVRELLERGADVGLATRGMgFTALHY 408
                 6788***************************999988999987 PP

  == domain 2  score: 4.9 bits;  conditional E-value: 0.02
       Ank_5  28 aadvvrlLlargadlnltdsrGltald 54 
                 +adv++lLl  +a +++ +  G+tal+
  KOO21726.1 418 HADVLELLLQARAEPGALNCFGRTALE 444
                 89***********************97 PP

>> Ank_3  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.0       7.1   1.3e+04       2       9 ..     158     165 ..     157     171 .. 0.81
   2 !   26.1   0.0   3.6e-09   6.4e-06       2      29 ..     368     394 ..     367     396 .. 0.95
   3 ?    3.1   0.0      0.11     2e+02       2      26 ..     402     429 ..     401     434 .. 0.80

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 7.1
       Ank_3   2 GetpLhlA 9  
                 G+t Lhl+
  KOO21726.1 158 GNTFLHLV 165
                 89999975 PP

  == domain 2  score: 26.1 bits;  conditional E-value: 3.6e-09
       Ank_3   2 GetpLhlAarsgnleivkfLlenkgadv 29 
                 Get+L++Aar+g++++v+ Lle +gadv
  KOO21726.1 368 GETLLMRAARYGHVPVVRELLE-RGADV 394
                 9*********************.9***8 PP

  == domain 3  score: 3.1 bits;  conditional E-value: 0.11
       Ank_3   2 GetpLhlAarsgnl....eivkfLlenkg 26 
                 G t+Lh+ a + n+    +++++Ll+   
  KOO21726.1 402 GFTALHYGAICFNPgahaDVLELLLQ-AR 429
                 88****99999999887679999999.44 PP

>> Ank_4  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.9   0.0   2.5e-08   4.6e-05       3      43 ..     370     410 ..     368     426 .. 0.80
   2 ?    3.2   0.0     0.076   1.4e+02      15      39 ..     420     443 ..     416     444 .. 0.91

  Alignments for each domain:
  == domain 1  score: 23.9 bits;  conditional E-value: 2.5e-08
       Ank_4   3 taLhyaaisgrlelvrlLlekgadinaqdnrsGetalhiAa 43 
                 t+L +aa +g++++vr Lle+gad+   + + G+talh++a
  KOO21726.1 370 TLLMRAARYGHVPVVRELLERGADVGLATRGMGFTALHYGA 410
                 78999999****************99986677*******87 PP

  == domain 2  score: 3.2 bits;  conditional E-value: 0.076
       Ank_4  15 elvrlLlekgadinaqdnrsGetal 39 
                 ++++lLl+ +a++ a  n  G+tal
  KOO21726.1 420 DVLELLLQARAEPGAL-NCFGRTAL 443
                 799************9.999***98 PP

>> EF-hand_5  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.1   0.0      0.36   6.5e+02       7      24 ..       6      23 ..       6      24 .. 0.78
   2 !   19.2   0.4   3.2e-07   0.00058       5      22 ..      32      49 ..      29      52 .. 0.90

  Alignments for each domain:
  == domain 1  score: 0.1 bits;  conditional E-value: 0.36
                HH-SS-SSCE-HHHHHHH CS
   EF-hand_5  7 aiDlNgDGkIskeELktl 24
                ++DlN D k+   EL ++
  KOO21726.1  6 KLDLNADNKLVLAELAAF 23
                68*****99877777666 PP

  == domain 2  score: 19.2 bits;  conditional E-value: 3.2e-07
                HHHH-SS-SSCE-HHHHH CS
   EF-hand_5  5 FqaiDlNgDGkIskeELk 22
                F+++D + DGkI++ E+ 
  KOO21726.1 32 FKQLDIDEDGKITRTEFS 49
                ****************96 PP

>> EF-hand_7  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.2   8.2e-06     0.015       8      69 ..       4      51 ..       1      53 [. 0.75
   2 !   16.9   0.3   3.6e-06    0.0064       7      54 ..      31      76 ..      26      79 .. 0.74

  Alignments for each domain:
  == domain 1  score: 15.8 bits;  conditional E-value: 8.2e-06
   EF-hand_7  8 FkelDtdgdgyldkeellrllrkifqgagegsklsdeelellfkefDtdkdGvisfdEFlkl 69
                + +lD + d++l  +el  ++       geg    +      fk +D d dG+i+++EF  +
  KOO21726.1  4 YTKLDLNADNKLVLAELA-AFV------GEGAA-AR------FKQLDIDEDGKITRTEFSDA 51
                667777777777777777.665......77777.55......99999999999999999876 PP

  == domain 2  score: 16.9 bits;  conditional E-value: 3.6e-06
   EF-hand_7  7 aFkelDtdgdgyldkeellrllrkifqgagegsklsdeelellfkefD 54
                +Fk+lD d dg+++++e+ +++ +i    + g +    el+++++ +D
  KOO21726.1 31 RFKQLDIDEDGKITRTEFSDAFGRIER--ELGQSAAISELDEMLQRVD 76
                799999999999999999998888876..4444444445777777766 PP

>> EF-hand_6  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.9   0.0     0.073   1.3e+02       4      25 ..       2      23 ..       1      27 [. 0.86
   2 !   16.1   0.1   4.2e-06    0.0076       6      27 ..      32      53 ..      29      60 .. 0.88

  Alignments for each domain:
  == domain 1  score: 2.9 bits;  conditional E-value: 0.073
   EF-hand_6  4 eaFklfDkdgdGkidaeElrka 25
                +++ ++D + d+k+  +El ++
  KOO21726.1  2 DVYTKLDLNADNKLVLAELAAF 23
                68899*********99999876 PP

  == domain 2  score: 16.1 bits;  conditional E-value: 4.2e-06
   EF-hand_6  6 FklfDkdgdGkidaeElrkalr 27
                Fk++D d dGki++ E+ +a+ 
  KOO21726.1 32 FKQLDIDEDGKITRTEFSDAFG 53
                *****************99986 PP

>> EF-hand_1  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.0   0.0       8.8   1.6e+04       8      17 ..       6      15 ..       3      23 .. 0.76
   2 !   16.7   0.1   2.1e-06    0.0038       6      27 ..      32      53 ..      29      55 .. 0.90
   3 ?   -2.1   0.1         2   3.7e+03       1      10 [.      67      76 ..      67      77 .. 0.87

  Alignments for each domain:
  == domain 1  score: -4.0 bits;  conditional E-value: 8.8
                HHTTTSSSEE CS
   EF-hand_1  8 efDkDgdGkI 17
                ++D + d k+
  KOO21726.1  6 KLDLNADNKL 15
                6899999886 PP

  == domain 2  score: 16.7 bits;  conditional E-value: 2.1e-06
                HHHHTTTSSSEEEHHHHHHHHH CS
   EF-hand_1  6 FrefDkDgdGkIdfeEfkellk 27
                F+ +D D dGkI++ Ef +++ 
  KOO21726.1 32 FKQLDIDEDGKITRTEFSDAFG 53
                9****************99985 PP

  == domain 3  score: -2.1 bits;  conditional E-value: 2
                HHHHHHHHHT CS
   EF-hand_1  1 elkeiFrefD 10
                el+e+ + +D
  KOO21726.1 67 ELDEMLQRVD 76
                799**99999 PP

>> EF-hand_8  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.1   3.1e-05     0.055      32      52 ..      32      52 ..      31      54 .. 0.91

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 3.1e-05
   EF-hand_8 32 frefDtdgdGkisfeEFcvll 52
                f+ +D+d+dGki+ +EF + +
  KOO21726.1 32 FKQLDIDEDGKITRTEFSDAF 52
                899**************8865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (626 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       484  (0.0269954); expected 358.6 (0.02)
Passed bias filter:                      416  (0.0232026); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.57u 0.26s 00:00:00.83 Elapsed: 00:00:00.43
# Mc/sec: 4385.82
//
Query:       KOO21727.1  [L=999]
Description: e2f transcription factor-like e2fe-like protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      1e-35  121.6   0.0    1.8e-17   63.1   0.0    2.4  2  E2F_TDP   E2F/DP family winged-helix DNA-binding domain
     0.0055   16.6   0.1      0.022   14.6   0.0    2.0  2  TrmB      Sugar-specific transcriptional regulator TrmB


Domain annotation for each model (and alignments):
>> E2F_TDP  E2F/DP family winged-helix DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.1   0.0     2e-21   1.8e-17       1      71 []     548     612 ..     548     612 .. 0.97
   2 !   56.2   0.0     3e-19   2.7e-15       1      71 []     681     777 ..     681     777 .. 0.92

  Alignments for each domain:
  == domain 1  score: 63.1 bits;  conditional E-value: 2e-21
     E2F_TDP   1 kdksLgvltkkfvellkesakgtlslneaakeLvdkkdekvkkRRiYDilNVLealglieKeskneikWig 71 
                 kdksLg+l+ +f++l+++ +  t++l+ +a++L+      v +RRiYDi+NVLe+l++++K++ ++++W+g
  KOO21727.1 548 KDKSLGLLADNFLQLFASGSCTTVELEGVATRLG------VGRRRIYDIVNVLESLDVVQKDRASSYTWLG 612
                 79**************9988999***********......*****************************97 PP

  == domain 2  score: 56.2 bits;  conditional E-value: 3e-19
     E2F_TDP   1 kdksLgvltkkfvellke.....sakgtlslneaakeLv................dkkdekvkkRRiYDilNVLealglieKes.....kneikWig 71 
                 k+ks++ l++kfv l+ +       +g++sl++aa+ L                 d  ++k+k RR+YDi NVL +l +ieK +     k+++kW+g
  KOO21727.1 681 KEKSIRELSTKFVGLFLQavatpGMDGVISLEQAARSLLlhesggdkpgatavepDAGAMKTKVRRLYDICNVLTSLRMIEKIKlpdtsKPAFKWLG 777
                 69**************664544433999*******************************************************999999******97 PP

>> TrmB  Sugar-specific transcriptional regulator TrmB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.1      0.44   3.9e+03       6      21 ..     403     418 ..     403     421 .. 0.81
   2 !   14.6   0.0   2.5e-06     0.022      26      58 ..     574     606 ..     556     616 .. 0.83

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 0.44
                 HHHHCCCHCHHHHHHC CS
        TrmB   6 LseyEakvYlaLlklg 21 
                 L+  + ++Y+++lk+ 
  KOO21727.1 403 LKAQDEEAYTTMLKER 418
                 6778999******876 PP

  == domain 2  score: 14.6 bits;  conditional E-value: 2.5e-06
                 CHHCCCTTSSCHCHHHHHHHHHHCTSEEEESST CS
        TrmB  26 deiaeelgvprskvYevLrsLedkGlVerekgr 58 
                 + +a +lgv r ++Y++++ Le+ ++V++ + +
  KOO21727.1 574 EGVATRLGVGRRRIYDIVNVLESLDVVQKDRAS 606
                 5699************************98765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (999 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       563  (0.0314016); expected 358.6 (0.02)
Passed bias filter:                      426  (0.0237604); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.71u 0.27s 00:00:00.98 Elapsed: 00:00:00.44
# Mc/sec: 6873.32
//
Query:       KOO21728.1  [L=84]
Description: hypothetical protein Ctob_000909 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (84 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       369  (0.0205812); expected 358.6 (0.02)
Passed bias filter:                      161  (0.00897987); expected 358.6 (0.02)
Passed Vit filter:                         9  (0.00050198); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.24s 00:00:00.60 Elapsed: 00:00:00.41
# Mc/sec: 614.91
//
Query:       KOO21729.1  [L=1046]
Description: protein nlrc3 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.3e-18   63.5  32.6       0.46   10.7   0.0   16.5 17  LRR_6       Leucine Rich repeat
    3.2e-09   36.1   1.7         18    6.4   0.1   10.0 12  LRR_1       Leucine Rich Repeat
    9.3e-06   25.9  17.8        5.1    7.7   0.0    8.0  7  LRR_4       Leucine Rich repeats (2 copies)
    0.00089   19.3   0.0      0.013   15.6   0.0    2.9  2  Skp1        Skp1 family, dimerisation domain
    0.00099   18.8  16.1        4.6    7.1   0.7    8.4  8  LRR_8       Leucine rich repeat
     0.0021   18.4   4.2        8.1    6.9   0.0    6.2  7  HOASN       Haem-oxygenase-associated N-terminal helices
  ------ inclusion threshold ------
      0.015   15.1   0.4         27    4.6   0.0    4.1  4  DUF2202     Uncharacterized protein domain (DUF2202)
      0.083   12.5   0.1         20    4.7   0.0    3.2  3  Metal_CEHH  Predicted metal binding domain


Domain annotation for each model (and alignments):
>> LRR_6  Leucine Rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.1       3.2   7.2e+03       4      11 ..     371     378 ..     371     378 .. 0.88
   2 ?    3.6   0.0     0.039        87       5      24 .]     400     419 ..     399     419 .. 0.95
   3 !    7.3   0.0    0.0024       5.5       1      13 [.     424     436 ..     424     437 .. 0.90
   4 ?    5.3   0.1     0.011        24       5      24 .]     528     547 ..     527     547 .. 0.88
   5 !    6.0   0.0    0.0063        14       2      12 ..     553     563 ..     552     563 .. 0.91
   6 !    7.8   0.0    0.0017       3.8       5      24 .]     593     612 ..     592     612 .. 0.93
   7 ?   -1.0   0.0       1.1   2.5e+03       4      20 ..     636     652 ..     634     656 .. 0.72
   8 ?    3.7   0.0     0.035        78       5      24 .]     665     684 ..     665     684 .. 0.90
   9 ?    5.0   0.1     0.014        31       5      16 ..     693     704 ..     692     706 .. 0.87
  10 !   10.7   0.0   0.00021      0.46       5      24 .]     731     750 ..     728     750 .. 0.95
  11 ?    0.9   0.0      0.27   6.1e+02       3      12 ..     773     782 ..     772     791 .. 0.89
  12 ?   -2.4   0.0       3.3   7.3e+03      12      23 ..     810     821 ..     807     821 .. 0.84
  13 ?    1.7   0.0      0.15   3.5e+02       5      24 .]     870     889 ..     869     889 .. 0.90
  14 ?    4.9   0.0     0.015        34       1      12 [.     894     905 ..     894     907 .. 0.89
  15 ?    5.0   0.4     0.014        31       5      15 ..     931     941 ..     928     943 .. 0.89
  16 ?    2.5   0.1     0.085   1.9e+02       5      15 ..     971     981 ..     970     983 .. 0.89
  17 ?    4.6   0.1     0.019        42       4      19 ..    1013    1028 ..    1010    1030 .. 0.88

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 3.2
       LRR_6   4 hLteLdLs 11 
                 ++teLdL+
  KOO21729.1 371 TMTELDLR 378
                 79****96 PP

  == domain 2  score: 3.6 bits;  conditional E-value: 0.039
       LRR_6   5 LteLdLsgNdIgDeGaeaLa 24 
                 Lt+ +L+ N++  eG +a++
  KOO21729.1 400 LTKISLARNNLEEEGTKAIC 419
                 899************99998 PP

  == domain 3  score: 7.3 bits;  conditional E-value: 0.0024
       LRR_6   1 snthLteLdLsgN 13 
                 +nt+L+eLd+sg+
  KOO21729.1 424 QNTTLKELDISGH 436
                 69*********86 PP

  == domain 4  score: 5.3 bits;  conditional E-value: 0.011
       LRR_6   5 LteLdLsgNdIgDeGaeaLa 24 
                 Lt+L+L+ N++g eG + L+
  KOO21729.1 528 LTKLSLAKNKLGEEGTKFLC 547
                 9************9977665 PP

  == domain 5  score: 6.0 bits;  conditional E-value: 0.0063
       LRR_6   2 nthLteLdLsg 12 
                 n++L+eLdLsg
  KOO21729.1 553 NNTLKELDLSG 563
                 9********96 PP

  == domain 6  score: 7.8 bits;  conditional E-value: 0.0017
       LRR_6   5 LteLdLsgNdIgDeGaeaLa 24 
                 Lt +++++N I ++Ga  La
  KOO21729.1 593 LTRVNVRHNSIAGDGAARLA 612
                 89**************8876 PP

  == domain 7  score: -1.0 bits;  conditional E-value: 1.1
       LRR_6   4 hLteLdLsgNdIgDeGa 20 
                 + teLdL+g  +g eG+
  KOO21729.1 636 SFTELDLKGKVVGVEGG 652
                 789****9866666665 PP

  == domain 8  score: 3.7 bits;  conditional E-value: 0.035
       LRR_6   5 LteLdLsgNdIgDeGaeaLa 24 
                 Lt+ d+s+N +g e a+ +a
  KOO21729.1 665 LTKIDVSWNIFGPEDAKVFA 684
                 899*********99998776 PP

  == domain 9  score: 5.0 bits;  conditional E-value: 0.014
       LRR_6   5 LteLdLsgNdIg 16 
                 Lt+LdLs N + 
  KOO21729.1 693 LTSLDLSNNALC 704
                 9********975 PP

  == domain 10  score: 10.7 bits;  conditional E-value: 0.00021
       LRR_6   5 LteLdLsgNdIgDeGaeaLa 24 
                 Lt+ d++ N+I ++Ga  La
  KOO21729.1 731 LTSIDVRRNKIAGDGAVQLA 750
                 9****************997 PP

  == domain 11  score: 0.9 bits;  conditional E-value: 0.27
       LRR_6   3 thLteLdLsg 12 
                 ++LteLdL+g
  KOO21729.1 773 NSLTELDLKG 782
                 68******85 PP

  == domain 12  score: -2.4 bits;  conditional E-value: 3.3
       LRR_6  12 gNdIgDeGaeaL 23 
                 gN+++ e a+ L
  KOO21729.1 810 GNQLDAESAKML 821
                 8******99976 PP

  == domain 13  score: 1.7 bits;  conditional E-value: 0.15
       LRR_6   5 LteLdLsgNdIgDeGaeaLa 24 
                 Lt+ +L+ N++g eG +a++
  KOO21729.1 870 LTKMSLAKNELGEEGTKAIC 889
                 677789*********99998 PP

  == domain 14  score: 4.9 bits;  conditional E-value: 0.015
       LRR_6   1 snthLteLdLsg 12 
                 +n +L+eLd+sg
  KOO21729.1 894 QNKTLKELDISG 905
                 599*******97 PP

  == domain 15  score: 5.0 bits;  conditional E-value: 0.014
       LRR_6   5 LteLdLsgNdI 15 
                 Lt+LdLs N++
  KOO21729.1 931 LTKLDLSNNKL 941
                 9********97 PP

  == domain 16  score: 2.5 bits;  conditional E-value: 0.085
       LRR_6   5 LteLdLsgNdI 15 
                 Lt+ dLs N++
  KOO21729.1 971 LTSIDLSRNHL 981
                 8********97 PP

  == domain 17  score: 4.6 bits;  conditional E-value: 0.019
       LRR_6    4 hLteLdLsgNdIgDeG 19  
                  +Lt+ dL++N++  eG
  KOO21729.1 1013 SLTKIDLTYNHLEEEG 1028
                  7**********98777 PP

>> LRR_1  Leucine Rich Repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.0         8   1.8e+04       2      13 ..     400     411 ..     400     418 .. 0.81
   2 ?    0.5   0.0      0.69   1.6e+03       2      10 ..     428     436 ..     427     447 .. 0.81
   3 ?    0.6   0.0      0.63   1.4e+03       2       9 ..     556     563 ..     555     574 .. 0.87
   4 ?   -1.2   0.0       2.4   5.4e+03       2      13 ..     593     604 ..     592     613 .. 0.82
   5 ?    1.5   0.0      0.32   7.2e+02       2      12 ..     665     675 ..     664     683 .. 0.82
   6 ?    4.6   0.0     0.031        70       2      17 ..     693     708 ..     692     710 .. 0.81
   7 ?   -1.8   0.0       3.8   8.6e+03       2      12 ..     731     741 ..     730     750 .. 0.85
   8 ?   -3.3   0.0         8   1.8e+04       1       7 [.     774     780 ..     774     782 .. 0.83
   9 ?   -0.4   0.0       1.4   3.1e+03       2       9 ..     898     905 ..     897     913 .. 0.87
  10 !    6.4   0.1     0.008        18       2      17 ..     931     946 ..     930     950 .. 0.85
  11 ?    3.8   0.2     0.056   1.3e+02       2      16 ..     971     984 ..     970     989 .. 0.81
  12 ?    2.4   0.0      0.16   3.7e+02       1      14 [.    1013    1026 ..    1013    1038 .. 0.78

  Alignments for each domain:
  == domain 1  score: -3.3 bits;  conditional E-value: 8
       LRR_1   2 LrhLdLsnnpll 13 
                 L+++ L +n+l+
  KOO21729.1 400 LTKISLARNNLE 411
                 788999999984 PP

  == domain 2  score: 0.5 bits;  conditional E-value: 0.69
       LRR_1   2 LrhLdLsnn 10 
                 L++Ld+s+ 
  KOO21729.1 428 LKELDISGH 436
                 9*****875 PP

  == domain 3  score: 0.6 bits;  conditional E-value: 0.63
       LRR_1   2 LrhLdLsn 9  
                 L++LdLs+
  KOO21729.1 556 LKELDLSG 563
                 9*****98 PP

  == domain 4  score: -1.2 bits;  conditional E-value: 2.4
       LRR_1   2 LrhLdLsnnpll 13 
                 L++ ++++n++ 
  KOO21729.1 593 LTRVNVRHNSIA 604
                 8999*****984 PP

  == domain 5  score: 1.5 bits;  conditional E-value: 0.32
       LRR_1   2 LrhLdLsnnpl 12 
                 L+++d+s+n++
  KOO21729.1 665 LTKIDVSWNIF 675
                 899******97 PP

  == domain 6  score: 4.6 bits;  conditional E-value: 0.031
       LRR_1   2 LrhLdLsnnpllglpp 17 
                 L++LdLsnn l g ++
  KOO21729.1 693 LTSLDLSNNALCGVTS 708
                 99*******9876655 PP

  == domain 7  score: -1.8 bits;  conditional E-value: 3.8
       LRR_1   2 LrhLdLsnnpl 12 
                 L+++d+++n +
  KOO21729.1 731 LTSIDVRRNKI 741
                 899******87 PP

  == domain 8  score: -3.3 bits;  conditional E-value: 8
       LRR_1   1 nLrhLdL 7  
                 +L++LdL
  KOO21729.1 774 SLTELDL 780
                 699***9 PP

  == domain 9  score: -0.4 bits;  conditional E-value: 1.4
       LRR_1   2 LrhLdLsn 9  
                 L++Ld+s+
  KOO21729.1 898 LKELDISG 905
                 9*****86 PP

  == domain 10  score: 6.4 bits;  conditional E-value: 0.008
       LRR_1   2 LrhLdLsnnpllglpp 17 
                 L++LdLsnn l g+++
  KOO21729.1 931 LTKLDLSNNKLCGIHD 946
                 89*********87765 PP

  == domain 11  score: 3.8 bits;  conditional E-value: 0.056
       LRR_1   2 LrhLdLsnnpllglp 16 
                 L+++dLs+n+l + +
  KOO21729.1 971 LTSIDLSRNHL-CGI 984
                 99********9.444 PP

  == domain 12  score: 2.4 bits;  conditional E-value: 0.16
       LRR_1    1 nLrhLdLsnnpllg 14  
                  +L+++dL++n+l+ 
  KOO21729.1 1013 SLTKIDLTYNHLEE 1026
                  699********953 PP

>> LRR_4  Leucine Rich repeats (2 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.7   0.0    0.0023       5.1       3      33 ..     400     436 ..     399     444 .. 0.86
   2 !    7.3   0.1    0.0029       6.5       3      32 ..     528     563 ..     527     574 .. 0.81
   3 ?    4.4   0.3     0.024        53       3      13 ..     693     703 ..     692     742 .. 0.84
   4 ?   -2.5   0.0       3.5   7.9e+03      24      30 ..     774     780 ..     770     783 .. 0.63
   5 ?    3.5   0.0     0.047     1e+02       3      33 ..     870     906 ..     869     915 .. 0.75
   6 !    6.5   1.2    0.0053        12       3      33 ..     931     979 ..     930     984 .. 0.65
   7 ?   -0.7   0.0      0.98   2.2e+03       2      14 ..    1013    1025 ..    1011    1030 .. 0.76

  Alignments for each domain:
  == domain 1  score: 7.7 bits;  conditional E-value: 0.0023
                 --EEE--SS---E-S-......HHH-TT--EEE-.-S CS
       LRR_4   3 LevLdLsnNqltdipl......leklpnLkeLdLsgN 33 
                 L++++L+ N+l + +       le+++ LkeLd+sg 
  KOO21729.1 400 LTKISLARNNLEEEGTkaiceaLEQNTTLKELDISGH 436
                 99**********9888998777779999******985 PP

  == domain 2  score: 7.3 bits;  conditional E-value: 0.0029
                 --EEE--SS---E-S-......HHH-TT--EEE-.- CS
       LRR_4   3 LevLdLsnNqltdipl......leklpnLkeLdLsg 32 
                 L++L+L+ N+l + +       l ++  LkeLdLsg
  KOO21729.1 528 LTKLSLAKNKLGEEGTkflcdaLVGNNTLKELDLSG 563
                 9***********9888976544447888******87 PP

  == domain 3  score: 4.4 bits;  conditional E-value: 0.024
                 --EEE--SS-- CS
       LRR_4   3 LevLdLsnNql 13 
                 L++LdLsnN l
  KOO21729.1 693 LTSLDLSNNAL 703
                 78888888864 PP

  == domain 4  score: -2.5 bits;  conditional E-value: 3.5
                 T--EEE- CS
       LRR_4  24 nLkeLdL 30 
                 +L+eLdL
  KOO21729.1 774 SLTELDL 780
                 4555555 PP

  == domain 5  score: 3.5 bits;  conditional E-value: 0.047
                 --EEE--SS---E-S-......HHH-TT--EEE-.-S CS
       LRR_4   3 LevLdLsnNqltdipl......leklpnLkeLdLsgN 33 
                 L++ +L+ N l + +       le+++ LkeLd+sg 
  KOO21729.1 870 LTKMSLAKNELGEEGTkaiceaLEQNKTLKELDISGA 906
                 7778888888887666777656668999******985 PP

  == domain 6  score: 6.5 bits;  conditional E-value: 0.0053
                 --EEE--SS-.................--E-S-.HHH-TT--EEE-.-S CS
       LRR_4   3 LevLdLsnNq.................ltdipl.leklpnLkeLdLsgN 33 
                 L++LdLsnN+                 +t i   l+ +  L+++dLs+N
  KOO21729.1 931 LTKLDLSNNKlcgihddyghgtynaegITAIADaLRVNGALTSIDLSRN 979
                 999****999666666666666666666644444554555666666666 PP

  == domain 7  score: -0.7 bits;  conditional E-value: 0.98
                  S--EEE--SS--- CS
       LRR_4    2 nLevLdLsnNqlt 14  
                  +L+++dL  N+l 
  KOO21729.1 1013 SLTKIDLTYNHLE 1025
                  5788888888876 PP

>> Skp1  Skp1 family, dimerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.0       1.2   2.7e+03      14      24 ..     101     111 ..      99     113 .. 0.88
   2 !   15.6   0.0   5.6e-06     0.013      11      43 ..     155     188 ..     152     190 .. 0.92

  Alignments for each domain:
  == domain 1  score: -1.4 bits;  conditional E-value: 1.2
        Skp1  14 mikgktpeeiR 24 
                 ++++k++ee+R
  KOO21729.1 101 QFQNKSFEELR 111
                 5899******9 PP

  == domain 2  score: 15.6 bits;  conditional E-value: 5.6e-06
        Skp1  11 vAdmikgktpeeiReiFnIenDft.pEEeeeirk 43 
                 +A+++ gk+ +e+R++++   Df  +E e+++ +
  KOO21729.1 155 IASRVNGKNADELRALLGAGSDFDsAELEAALAE 188
                 79**********************9999998765 PP

>> LRR_8  Leucine rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.5   0.1      0.23   5.1e+02       3      14 ..     400     411 ..     398     435 .. 0.61
   2 ?    3.9   0.2     0.021        46      26      59 ..     527     564 ..     517     565 .. 0.73
   3 ?    4.3   0.0     0.015        35      26      37 ..     692     703 ..     681     709 .. 0.66
   4 ?   -2.4   0.0       1.9   4.2e+03       3      13 ..     731     741 ..     725     743 .. 0.65
   5 ?   -3.5   0.0       4.2   9.5e+03      50      57 ..     774     781 ..     772     782 .. 0.54
   6 ?   -1.9   0.0       1.3   2.8e+03      21      33 ..     892     904 ..     869     907 .. 0.56
   7 !    7.1   0.7    0.0021       4.6       3      23 ..     931     951 ..     929     981 .. 0.72
   8 ?    2.1   0.0     0.074   1.7e+02      26      37 ..    1013    1024 ..    1000    1034 .. 0.65

  Alignments for each domain:
  == domain 1  score: 0.5 bits;  conditional E-value: 0.23
                 -SEEE-TTS--S CS
       LRR_8   3 LtsLdLsnNrlt 14 
                 Lt+++L +N+l+
  KOO21729.1 400 LTKISLARNNLE 411
                 566666666664 PP

  == domain 2  score: 3.9 bits;  conditional E-value: 0.021
                 T--EEE--SS--....-GGGGGGGTT--S-.EEE--SS CS
       LRR_8  26 nLkvLdLsnNll....ttlspgafsgLpsLrsLdLsgN 59 
                 +L+ L+L  N+l    t +  +a++g + L++LdLsg 
  KOO21729.1 527 GLTKLSLAKNKLgeegTKFLCDALVGNNTLKELDLSGE 564
                 67778888887755554455688888888888888875 PP

  == domain 3  score: 4.3 bits;  conditional E-value: 0.015
                 T--EEE--SS-- CS
       LRR_8  26 nLkvLdLsnNll 37 
                 +L++LdLsnN l
  KOO21729.1 692 ALTSLDLSNNAL 703
                 456666666654 PP

  == domain 4  score: -2.4 bits;  conditional E-value: 1.9
                 -SEEE-TTS-- CS
       LRR_8   3 LtsLdLsnNrl 13 
                 Lts+d+++N++
  KOO21729.1 731 LTSIDVRRNKI 741
                 55556666554 PP

  == domain 5  score: -3.5 bits;  conditional E-value: 4.2
                 S-.EEE-- CS
       LRR_8  50 sLrsLdLs 57 
                 sL++LdL 
  KOO21729.1 774 SLTELDLK 781
                 55555554 PP

  == domain 6  score: -1.9 bits;  conditional E-value: 1.3
                 STT-TT--EEE-- CS
       LRR_8  21 FkglsnLkvLdLs 33 
                  ++++ Lk+Ld+s
  KOO21729.1 892 LEQNKTLKELDIS 904
                 3344555555554 PP

  == domain 7  score: 7.1 bits;  conditional E-value: 0.0021
                 -SEEE-TTS--SEE-TTSSTT CS
       LRR_8   3 LtsLdLsnNrltslddeaFkg 23 
                 Lt+LdLsnN+l +++d+  +g
  KOO21729.1 931 LTKLDLSNNKLCGIHDDYGHG 951
                 778888888888887776665 PP

  == domain 8  score: 2.1 bits;  conditional E-value: 0.074
                  T--EEE--SS-- CS
       LRR_8   26 nLkvLdLsnNll 37  
                  +L+ +dL++N l
  KOO21729.1 1013 SLTKIDLTYNHL 1024
                  445555555544 PP

>> HOASN  Haem-oxygenase-associated N-terminal helices
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.0      0.89     2e+03      10      37 ..     406     433 ..     401     437 .. 0.85
   2 ?    0.5   0.0      0.35   7.9e+02      12      63 ..     536     587 ..     529     596 .. 0.79
   3 !    6.9   0.0    0.0036       8.1      17      49 ..     678     710 ..     672     718 .. 0.92
   4 ?    0.0   0.0      0.51   1.1e+03      21      43 ..     720     742 ..     713     753 .. 0.84
   5 ?   -3.0   0.0       4.6     1e+04       7      37 ..     874     903 ..     871     907 .. 0.76
   6 ?    1.5   0.0      0.17   3.9e+02      21      47 ..     960     986 ..     952    1001 .. 0.79
   7 ?    2.3   0.0     0.096   2.1e+02      20      59 ..    1002    1041 ..     989    1046 .] 0.76

  Alignments for each domain:
  == domain 1  score: -0.8 bits;  conditional E-value: 0.89
                 HHHT--SHHHHHHHHHTSTT--HHHHHH CS
       HOASN  10 alqnlpieeaalladalkvgasldqidl 37 
                 a++nl  e ++ + +al+ +++l+ +d 
  KOO21729.1 406 ARNNLEEEGTKAICEALEQNTTLKELDI 433
                 577999999*************999886 PP

  == domain 2  score: 0.5 bits;  conditional E-value: 0.35
                 HT--SHHHHHHHHHTSTT--HHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHH CS
       HOASN  12 qnlpieeaalladalkvgasldqidlalekllalaekGlkGdasayaayqal 63 
                 ++l  e +++l dal  + +l+ +dl+ e+    +   ++G a a      l
  KOO21729.1 536 NKLGEEGTKFLCDALVGNNTLKELDLSGEHTYQGTVSSIGGTAGAKHVANML 587
                 467788899*****************99999888888888888776555555 PP

  == domain 3  score: 6.9 bits;  conditional E-value: 0.0036
                 HHHHHHHHHTSTT--HHHHHHHHHHHHHHHHHH CS
       HOASN  17 eeaalladalkvgasldqidlalekllalaekG 49 
                 e+a++ adal+v+ +l  +dl+ ++l  ++ +G
  KOO21729.1 678 EDAKVFADALRVNGALTSLDLSNNALCGVTSRG 710
                 7899**************************988 PP

  == domain 4  score: 0.0 bits;  conditional E-value: 0.51
                 HHHHHTSTT--HHHHHHHHHHHH CS
       HOASN  21 lladalkvgasldqidlalekll 43 
                  +adal+v+  l  id+  +k++
  KOO21729.1 720 AIADALRVNGGLTSIDVRRNKIA 742
                 68**************9999997 PP

  == domain 5  score: -3.0 bits;  conditional E-value: 4.6
                 HHHHHHT--SHHHHHHHHHTSTT--HHHHHH CS
       HOASN   7 slPalqnlpieeaalladalkvgasldqidl 37 
                 sl +  +l  e ++ + +al+ + +l+ +d 
  KOO21729.1 874 SLAKN-ELGEEGTKAICEALEQNKTLKELDI 903
                 55444.7888889999999999999998876 PP

  == domain 6  score: 1.5 bits;  conditional E-value: 0.17
                 HHHHHTSTT--HHHHHHHHHHHHHHHH CS
       HOASN  21 lladalkvgasldqidlalekllalae 47 
                  +adal+v+ +l  idl+ ++l  + +
  KOO21729.1 960 AIADALRVNGALTSIDLSRNHLCGIWN 986
                 68***************9999887755 PP

  == domain 7  score: 2.3 bits;  conditional E-value: 0.096
                  HHHHHHTSTT--HHHHHHHHHHHHHHHHHHHTT-HHHHHH CS
       HOASN   20 alladalkvgasldqidlalekllalaekGlkGdasayaa 59  
                    +adal v+ sl +idl+ ++l    e  ++   +  a 
  KOO21729.1 1002 TAIADALGVNGSLTKIDLTYNHLEEEGETSIRNAVQGKAG 1041
                  569***************9998876666666665555555 PP

>> DUF2202  Uncharacterized protein domain (DUF2202)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.9   0.0     0.019        44      76     104 ..     408     436 ..     400     458 .. 0.85
   2 ?    0.4   0.0      0.23   5.1e+02      75     102 ..     535     562 ..     523     572 .. 0.87
   3 ?    4.6   0.0     0.012        27      64     105 ..     868     907 ..     858     928 .. 0.77
   4 ?   -1.6   0.0      0.96   2.1e+03      71      91 ..    1017    1037 ..     994    1042 .. 0.78

  Alignments for each domain:
  == domain 1  score: 3.9 bits;  conditional E-value: 0.019
     DUF2202  76 nkLvekgsksledaLkvgatiedldiaDl 104
                 n+L e+g k + +aL+  +t+ +ldi+  
  KOO21729.1 408 NNLEEEGTKAICEALEQNTTLKELDISGH 436
                 8999**********************865 PP

  == domain 2  score: 0.4 bits;  conditional E-value: 0.23
     DUF2202  75 YnkLvekgsksledaLkvgatiedldia 102
                  nkL e+g k l daL    t+ +ld++
  KOO21729.1 535 KNKLGEEGTKFLCDALVGNNTLKELDLS 562
                 58999********************986 PP

  == domain 3  score: 4.6 bits;  conditional E-value: 0.012
     DUF2202  64 GkfedeelqelYnkLvekgsksledaLkvgatiedldiaDle 105
                 G  ++ +l+   n+L e+g k + +aL+   t+ +ldi+  +
  KOO21729.1 868 GGLTKMSLA--KNELGEEGTKAICEALEQNKTLKELDISGAK 907
                 555555554..499************************8765 PP

  == domain 4  score: -1.6 bits;  conditional E-value: 0.96
     DUF2202   71 lqelYnkLvekgsksledaLk 91  
                  ++  Yn+L e+g++s+ +a++
  KOO21729.1 1017 IDLTYNHLEEEGETSIRNAVQ 1037
                  344599999999999999875 PP

>> Metal_CEHH  Predicted metal binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.7   0.0     0.009        20      87     119 ..     461     493 ..     451     548 .. 0.91
   2 ?    0.2   0.0      0.22   4.9e+02      87     118 ..     803     834 ..     799     841 .. 0.84
   3 ?    2.8   0.0     0.035        77      59     113 ..     842     896 ..     838     912 .. 0.82

  Alignments for each domain:
  == domain 1  score: 4.7 bits;  conditional E-value: 0.009
  Metal_CEHH  87 lllkmlrrpqlketspemistliqqkalsladl 119
                 l++  l ++ql+e+s++m++ +++qk +sl  +
  KOO21729.1 461 LTVTNLLHNQLDEASAKMLAEVAKQKGISLCGI 493
                 67778899*********************9865 PP

  == domain 2  score: 0.2 bits;  conditional E-value: 0.22
  Metal_CEHH  87 lllkmlrrpqlketspemistliqqkalslad 118
                 l++  l  +ql+  s++m++ +++qk +sl  
  KOO21729.1 803 LTVTNLLGNQLDAESAKMLTEVAKQKGISLCG 834
                 5566677899*******************975 PP

  == domain 3  score: 2.8 bits;  conditional E-value: 0.035
  Metal_CEHH  59 ldftnydlrppsvvfvdpftrralarkdlllkmlrrpqlketspemistliqqka 113
                  df+n +l+pp  +++     +a  +  l+   l +++l e  ++ i+  ++q++
  KOO21729.1 842 ADFSNQNLKPPDAILLASDLLQADVTGGLTKMSLAKNELGEEGTKAICEALEQNK 896
                 69***********99999999998899999999999***9999999887665554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1046 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       429  (0.0239277); expected 358.6 (0.02)
Passed bias filter:                      382  (0.0213063); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.71u 0.31s 00:00:01.02 Elapsed: 00:00:00.45
# Mc/sec: 6961.76
//
Query:       KOO21730.1  [L=557]
Description: hypothetical protein Ctob_000903 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    0.00013   21.8  22.7    0.00013   21.8  22.7    2.0  2  ERM         Ezrin/radixin/moesin family
  ------ inclusion threshold ------
        2.4    5.6  23.3        3.7    5.0  23.3    1.3  1  DUF3584     Protein of unknown function (DUF3584)


Domain annotation for each model (and alignments):
>> ERM  Ezrin/radixin/moesin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.5       0.3   2.7e+03      52      78 ..     153     179 ..     128     208 .. 0.60
   2 !   21.8  22.7   1.5e-08   0.00013      19     137 ..     225     352 ..     220     433 .. 0.69

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 0.3
         ERM  52 Leqkaaeaeeeiqrlkesaekeeeeke 78 
                 L++ a e e + ++  e+ e+ee +++
  KOO21730.1 153 LDEMADEHEDMPDQYDEAVEEEEVQQQ 179
                 222222222222222222222222222 PP

  == domain 2  score: 21.8 bits;  conditional E-value: 1.5e-08
         ERM  19 eeaekaqeaLreseet.aelLaekarraeeeaelLeqkaaeaeeeiqrlkesaekeeeekeklerklreaeleaarleeeserkeeeaerLkeeleear 116
                 eea+ a+ea r  ee  a   a  a++a  ++e  e+ ++e+e e ++l++++e+ e+eke+le+++ +ae+e+arl+ee+e+  e a    e +e+ar
  KOO21730.1 225 EEAADAEEAERAREEAvAAAVASAAEEA--AREAREAAEEELEDERAALRQREEELEREKERLEERALQAEEELARLREEKEAALEAALVTAEAAEAAR 321
                 6666666665544444034444444444..444466778899*****************************************8888888888899999 PP

         ERM 117 eaeeeakekllealstpsks...........e 137
                  a ++++e+ +++  +               +
  KOO21730.1 322 LARQQEQEQEHDFDDRDD-GfgdhgdgfdepD 352
                 999999999999988874.3466665554331 PP

>> DUF3584  Protein of unknown function (DUF3584)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.0  23.3   0.00041       3.7     403     508 ..     228     337 ..     144     362 .. 0.73

  Alignments for each domain:
  == domain 1  score: 5.0 bits;  conditional E-value: 0.00041
     DUF3584 403 leaireekdrlkaaieealealesqlrkqleaqkeelneeekel...esrlselklrlds..atateEeleqieeadealekaqeelekaeaevealqa 496
                 ++a   e++r  a++ ++ +a e++ r+ +ea++eel++e++ l   e++l+++k rl++   +a+eE+    ee+++ale+a  ++e+aea++ a q+
  KOO21730.1 228 ADAEEAERAREEAVAAAVASAAEEAAREAREAAEEELEDERAALrqrEEELEREKERLEEraLQAEEELARLREEKEAALEAALVTAEAAEAARLARQQ 326
                 334444555557777888888888888888888888888877651114556777777654215667777777889999*****9999999999998888 PP

     DUF3584 497 eeeqlrkkrdea 508
                 e+eq  +++d  
  KOO21730.1 327 EQEQE-HDFDDR 337
                 88774.444443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (557 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1979  (0.11038); expected 358.6 (0.02)
Passed bias filter:                      571  (0.0318478); expected 358.6 (0.02)
Passed Vit filter:                       132  (0.00736237); expected 17.9 (0.001)
Passed Fwd filter:                        37  (0.0020637); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 1.01u 0.37s 00:00:01.38 Elapsed: 00:00:00.49
# Mc/sec: 3427.68
//
Query:       KOO21731.1  [L=837]
Description: membrane glycoprotein yil173w [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
     1e-113  380.5   2.4   1.5e-113  380.0   2.4    1.2  1  Sortilin-Vps10  Sortilin, neurotensin receptor 3,
    3.9e-41  141.2   1.9      6e-41  140.6   1.9    1.3  1  Sortilin_C      Sortilin, neurotensin receptor 3, C-terminal
    2.9e-07   29.5   2.8        1.2    9.4   0.0    5.5  4  BNR             BNR/Asp-box repeat
    9.2e-05   21.9   5.4       0.11   11.8   0.1    4.2  2  BNR_2           BNR repeat-like domain
  ------ inclusion threshold ------
       0.14   12.2   1.2       0.27   11.3   1.2    1.4  1  DUF523          Protein of unknown function (DUF523)


Domain annotation for each model (and alignments):
>> Sortilin-Vps10  Sortilin, neurotensin receptor 3,
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  380.0   2.4    4e-117  1.5e-113       3     445 ..      53     511 ..      51     512 .. 0.92

  Alignments for each domain:
  == domain 1  score: 380.0 bits;  conditional E-value: 4e-117
                     EEEESSTTSS-EE-GGGGTTEEBE......-EEE-STTS--EEEEEES-EEEEESSTTSSEEEEE-SS-BS...S--EEESSETTEEEEE..... CS
  Sortilin-Vps10   3 vyiSeDeGktwkkvkeklkgeaiq......eivvhpfdkkkaylltdskklyvttDrGktwkkfklpfkpslsaeplsfhakdkdwlialgek.. 89 
                     vy+SeDeG++w++ + k+++++        +++v+p d +k ++ + +k+++ t DrG ++   +  f+ +    ++++h+++++w++a   +  
      KOO21731.1  53 VYRSEDEGRSWERQNWKMEKTSDDeksgilSFHVSPSDTNKLFFRGVGKQHWATLDRGGKYIPLEPAFTIK----EVKIHPTEPEWMMASHLTeg 143
                     8***********887655444333556677*******************************8888888888....9*************977789 PP

                     .......BTTS-EEEESSTTSSEEEEESSEEEEEE-S...........TT-EEEEE-SSS-TTT....TTTSEEEEEESSTTSS-EEEE.EEEEE CS
  Sortilin-Vps10  90 ...keskdckkkayystdggkswkklqesvkkcewakss......kkkeekilceekeeesese....ekkklrlvssddffkskkelksegvvs 171
                         e+k+c+ ++y+++d gk+w+++q++v ++ewa +          +e+i++++++  s+++     + k ++ +sdd+ k+k +l   + + 
      KOO21731.1 144 ckgAERKECNMEVYLTQDLGKTWRLIQRYVAQFEWAPAAdgllksGMLKESIFMVTYQMSSGNQpfgvWSAKAQFSRSDDLWKTKYTLL-PRGNR 237
                     88889999***************************877778888778899********999888555558889****************.9**** PP

                     EEEETTEEEEEEE-.TTSS-EEEEEESS.TSS-EE-SSS.-B-TT--EEEEEEESSEEEEEEE-SSSTS.EEEEEEE-TTSSCEEEEEEEEB-TT CS
  Sortilin-Vps10 172 favvkeflvvavks.eetselalyvSld.gkkfaeaefpskkleekaytvlessehsiflavttssdke.lgsllkSnsnGtsfvlslenvnrne 263
                     f   ++f++vav + +++++++lyvS + g+ f++a++p  +l+e++yt+l++se s+fl+v++ + ++ +g+++ S+s+G+ f lsl n +r+ 
      KOO21731.1 238 FLFLDKFIFVAVVNkHHETQVNLYVSSEgGRVFKKARLP-FQLTEHSYTILDTSEGSVFLHVNHGDYNTgYGNIYLSDSEGLRFALSLRNNKRDA 331
                     ***********999666789*******9899********.*************************98866************************* PP

                     TS-B--EEETTSTTEEEEEEE-T........TS-EEEEEESSTTS-EEEEE--TTS....SSTTT-SSSSB-EEEEE-HHHHHTT-S-SS--B-- CS
  Sortilin-Vps10 264 egyvdfekvegleGvilanvvknaeevkkgakkklktkItfddGrtWellkppdkd....kygcsskklekcsLhLhsyteelerknvgrkvfSs 354
                     +g  dfekv+g+eG++++n   n++  +k++k kl+tkI+fd+G++W+ +k p+      ++ c+  +++kcsLhLh++t+     +    ++Ss
      KOO21731.1 332 QGRCDFEKVQGIEGIYITNEQINVDPESKKEKPKLRTKISFDKGGRWANVKSPSVTntgkEFACNPVEDPKCSLHLHGVTD-----SW-GPFYSS 420
                     ***********************9999***************************9966655669999***********998.....33.47**** PP

                     TTSTT-EEEEEEEESSHHSS..S-EEEEESSSSSS-EEEESS-EEEEEEGGGTEEEEEE-SSS-B-EEEEESSTTSSEEEEE--SS-BEEEE CS
  Sortilin-Vps10 355 psApGlimgvGnvGkslksy.eeadtfiSrDaGltWkevlkgahkyefGDqGsiivavkdeeketkelsYSlDeGktWeeykfsdekirvld 445
                     ++A+Gl+m++GnvG +l+++ +e +tf+SrDaGltW++++ g+h+yefGD+G iiv+ +d++ ++ke++YS De  tW+e++fsd+  ++++
      KOO21731.1 421 KNAIGLVMATGNVGYHLSDKeDEVHTFFSRDAGLTWSMARAGSHIYEFGDHGAIIVIADDRK-ASKEVYYSWDEALTWNELHFSDKATEIEN 511
                     ******************996889*************************************6.*********************99887765 PP

>> Sortilin_C  Sortilin, neurotensin receptor 3, C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  140.6   1.9   1.7e-44     6e-41       2     160 ..     515     668 ..     514     677 .. 0.88

  Alignments for each domain:
  == domain 1  score: 140.6 bits;  conditional E-value: 1.7e-44
  Sortilin_C   2 epdstslkflllgksssedkekvvvislDFsklferkCke.......eeDyekwsareeek.kekCllGhkqkyrrrkkdakCfvgekfkdpkveenCe 92 
                 ep++ts+ f+++g++ ++     v++++DFs+l+e +Ck         +Dye ws+++ ++ ++kCllGh+ +y+rr++ a Cf+ge++++++ +++C+
  KOO21731.1 515 EPKATSQVFVMYGTRGEQ----GVLFQMDFSNLHEPQCKGvenagdpASDYELWSPSDGRSdGSKCLLGHQVRYTRRRRAAACFNGEQYERSEFRKTCP 609
                 799**********98776....7999************98999998866*********55569************************************ PP

  Sortilin_C  93 CteeDfeCdynfereesegkCvlaeklevpdeeekevCkkkkkkeksylkssgyrkipgntC..eggkek 160
                 CteeD+eCdy++er++++g Cv++  +++ + +   +Ck     ++ y+ s+gyr+++g+tC  ++g   
  KOO21731.1 610 CTEEDYECDYGYERTSESGPCVAVMAISTLPPA---ECK-----GT-YNVSNGYRLVAGDTCdpTKG--I 668
                 *****************9***998888877755...7*3.....45.999************54444..4 PP

>> BNR  BNR/Asp-box repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.2   0.0    0.0038        14       1      12 []      54      65 ..      54      65 .. 0.90
   2 !    7.1   0.0    0.0019       6.8       1      11 [.     157     167 ..     157     168 .. 0.89
   3 ?    2.3   0.1     0.076   2.7e+02       2      10 ..     370     378 ..     369     380 .. 0.90
   4 !    9.4   0.0   0.00034       1.2       1      11 [.     447     457 ..     447     458 .. 0.91

  Alignments for each domain:
  == domain 1  score: 6.2 bits;  conditional E-value: 0.0038
                EEESSTTSS-EE CS
         BNR  1 yyStDgGktWsk 12
                y S D G++W++
  KOO21731.1 54 YRSEDEGRSWER 65
                78********85 PP

  == domain 2  score: 7.1 bits;  conditional E-value: 0.0019
                 EEESSTTSS-E CS
         BNR   1 yyStDgGktWs 11 
                 y ++D GktW 
  KOO21731.1 157 YLTQDLGKTWR 167
                 789*******7 PP

  == domain 3  score: 2.3 bits;  conditional E-value: 0.076
                 EESSTTSS- CS
         BNR   2 yStDgGktW 10 
                 +S+D G  W
  KOO21731.1 370 ISFDKGGRW 378
                 8******** PP

  == domain 4  score: 9.4 bits;  conditional E-value: 0.00034
                 EEESSTTSS-E CS
         BNR   1 yyStDgGktWs 11 
                 ++S+D G tWs
  KOO21731.1 447 FFSRDAGLTWS 457
                 79********9 PP

>> BNR_2  BNR repeat-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.1   1.6    0.0017       6.1      84     153 ..      51     169 ..      34     333 .. 0.63
   2 !   11.8   0.1   3.1e-05      0.11      85     201 ..     369     500 ..     353     532 .. 0.65

  Alignments for each domain:
  == domain 1  score: 6.1 bits;  conditional E-value: 0.0017
                 E..EEESSTTSS----E.......HHHGG...............EEEEEE-SS--..EE--T--EEEE.......EE...................... CS
       BNR_2  84 r..vtSkDdGktWsapr.......rlpks...............pflnisgpvknkpiqladGrlilP.......sshe.................... 131
                    ++S+D+G++W+ ++       +   +                +l+++g++k+   +l+ G+  +P          e                    
  KOO21731.1  51 NfvYRSEDEGRSWERQNwkmektsD---DeksgilsfhvspsdtNKLFFRGVGKQHWATLDRGGKYIPlepaftiK--Evkihptepewmmashltegc 144
                 2347888888888887775555441...033355555555667777888888888888888887777765554330..134445556666666666666 PP

                 ...SS--.EEEEEEEESSTTSS-EE- CS
       BNR_2 132 ...lagk.wrallelsddggktWkkg 153
                       k   + ++l++d gktW+  
  KOO21731.1 145 kgaER-KeCNMEVYLTQDLGKTWRLI 169
                 65222.23666666677777777654 PP

  == domain 2  score: 11.8 bits;  conditional E-value: 3.1e-05
                 EEESSTTSS----E..HHHGGEEEEEE-SS--..EE--................T--EEEE....EE..SS--EEEEEEEESSTTSS-EE----SSSEE CS
       BNR_2  85 vtSkDdGktWsapr..rlpkspflnisgpvknkpiqla................dGrlilP....sshelagkwrallelsddggktWkkgrvveqisg 161
                   S D+G  W + +  +++++ + ++ +pv+ +  +l+                + +l+++     +h ++++++++ ++s+d g+tW++ r  ++i  
  KOO21731.1 369 KISFDKGGRWANVKspSVTNTGKEFACNPVEDPKCSLHlhgvtdswgpfyssknAIGLVMAtgnvGYHLSDKEDEVHTFFSRDAGLTWSMARAGSHI-- 465
                 6677777777777766666666777777777776666665555554444444222233333566677779999******************998655.. PP

                 EEEEEE.EEETTEEEEEEEE...EEEEEEESSTTSS-EEE CS
       BNR_2 162 eiqpsilvekdgslvalaRsrkaaileseSedgGetWskv 201
                     +++  + g ++++a +rka   + +S d++ tW+++
  KOO21731.1 466 ----YEF-GDHGAIIVIADDRKASKEVYYSWDEALTWNEL 500
                 ....444.22224444444444444444555666777665 PP

>> DUF523  Protein of unknown function (DUF523)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   1.2   7.5e-05      0.27       4      42 ..     574     610 ..     573     617 .. 0.85

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 7.5e-05
      DUF523   4 SaCLlgekvrydgkakksevleeelkelvkeelvpvCPE 42 
                 S+CLlg++vry  +    ++ +   +++ ++e+ + CP 
  KOO21731.1 574 SKCLLGHQVRYTRRRRAAACFNG--EQYERSEFRKTCPC 610
                 99************999766666..777777******95 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (837 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       608  (0.0339115); expected 358.6 (0.02)
Passed bias filter:                      527  (0.0293937); expected 358.6 (0.02)
Passed Vit filter:                        58  (0.00323498); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.71u 0.33s 00:00:01.04 Elapsed: 00:00:00.48
# Mc/sec: 5244.68
//
Query:       KOO21732.1  [L=339]
Description: hypothetical protein Ctob_000907 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    3.6e-05   23.7   0.0    9.4e-05   22.3   0.0    1.7  1  Galactosyl_T  Galactosyltransferase


Domain annotation for each model (and alignments):
>> Galactosyl_T  Galactosyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.3   0.0   5.2e-09   9.4e-05      17     105 ..      25     121 ..       8     138 .. 0.76

  Alignments for each domain:
  == domain 1  score: 22.3 bits;  conditional E-value: 5.2e-09
  Galactosyl_T  17 egnriktlFlvGlsakedkkvkelvmeeaklygDivvvdledsY.........enltlKtltlllwavskvpeaklilkvDdDvyvnpdkLlsllkr 104
                   e+  ++  F++G       + ++lv++e + + D+v ++ +d           + ++ K+l+++  a++    a ++ kvDdD +vn  +++ +l  
    KOO21732.1  25 ERCAVTLAFVLGDVTMFTAEERRLVQAERARHDDLVLLQAHDGAatsdashggRAVAEKALAWFVHAANASR-ASFVAKVDDDSLVNLVRVVAELRS 120
                   4688999*******99999*****************9998885422222222267999******99998766.****************99999987 PP

  Galactosyl_T 105 e 105
                    
    KOO21732.1 121 L 121
                   6 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (339 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       451  (0.0251548); expected 358.6 (0.02)
Passed bias filter:                      338  (0.0188521); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.26s 00:00:00.72 Elapsed: 00:00:00.43
# Mc/sec: 2389.99
//
Query:       KOO21733.1  [L=391]
Description: hsp90 chloroplast targeted [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    4.8e-44  150.6   0.0    6.4e-37  127.3   0.0    3.1  3  Ofd1_CTDD       Oxoglutarate and iron-dependent oxygenase deg
    1.1e-05   25.9   0.0     0.0011   19.6   0.0    2.3  2  2OG-FeII_Oxy_4  2OG-Fe(II) oxygenase superfamily


Domain annotation for each model (and alignments):
>> Ofd1_CTDD  Oxoglutarate and iron-dependent oxygenase degradation C-term
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.5   0.0   0.00052       4.6     107     152 ..     116     160 ..      83     167 .. 0.75
   2 !   13.9   0.0   2.8e-06     0.025       4      56 ..     177     229 ..     174     236 .. 0.87
   3 !  127.3   0.0   7.1e-41   6.4e-37     100     249 ..     234     386 ..     223     390 .. 0.91

  Alignments for each domain:
  == domain 1  score: 6.5 bits;  conditional E-value: 0.00052
                 HHH.HHHHSHHHHHHHHHHHSE.EE.-EEEEEEEEE-TTT-EE--BE CS
   Ofd1_CTDD 107 eLlekllkskafrkwlalitgldll.tsesilarRfrpGkdytLats 152
                  L    l s afr +++++tg+ +l  ++++    +r+G  + L ++
  KOO21733.1 116 ALR-AALYSPAFRAFVRTVTGCPPLtGQQDMSCNAYRHG-GHLLCHD 160
                 444.7789**************76635778899999999.6666665 PP

  == domain 2  score: 13.9 bits;  conditional E-value: 2.8e-06
                 HHHTTTB-GGGTSHHHHHHHHHHHHHHSEEEESS-B-HHHHHHHHHHH..HHH CS
   Ofd1_CTDD   4 efLlkylnpeYLtketveelqeqfeeessieledfLkkeiaeklkksleseek 56 
                   L   + p+YL++ t+  +++q+e +    l +fL +eia+ l ++  ++++
  KOO21733.1 177 AQLAAVVHPAYLKASTMAAVRSQLESQGAALLASFLRPEIAAALAHAALAADR 229
                 5688889**********************************999877656555 PP

  == domain 3  score: 127.3 bits;  conditional E-value: 7.1e-41
                 HHHHHHHHHH.HHHHSHHHHHHHHHHHSE.EE-EEEEEEEEE-TTT-EE--BE----G.EEEEEEEEE--.....-S-TTTSTT---EEEEE------- CS
   Ofd1_CTDD 100 daeeklkeLlekllkskafrkwlalitgldlltsesilarRfrpGkdytLatsteeee.avLevtlnltp.....tkgWesgevGGyelymagdddeee 192
                 d +++l+ +  +++ s +f +wla ++gl +++s+  ++rRfrpG dy La+  ++ +  +L++tl + +      + Wesg+vGG+e+ ++ ++++  
  KOO21733.1 234 DGGAQLEAVR-EVMSSAPFVQWLAHLSGL-TPRSCAAEVRRFRPGLDYSLAHVGTQCThETLDATLTFVAsraeeCAAWESGDVGGFECHVQASEEDHG 330
                 6677888888.99****************.**********************88865569*******99988888899****************99999 PP

                 -------------EEEEE---EEEEEEEEEETTEEEEE----TT-SS-EEEEEEEEE CS
   Ofd1_CTDD 193 DpavYksddeddsvLlslaaswNslslvlrdegvlkFvKYvsasakgsrwdvsgeye 249
                  + vYk+d++  +v  s+ ++ N+lslv r ++++kF+KYvsa+a gsrwdv ++y 
  KOO21733.1 331 AADVYKADESSAGV-TSIHPQTNALSLVRRGTDTMKFIKYVSAAAPGSRWDVAASYV 386
                 999***99988887.89************************************9995 PP

>> 2OG-FeII_Oxy_4  2OG-Fe(II) oxygenase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.6   0.0   1.2e-07    0.0011       1      26 [.     145     169 ..     145     174 .. 0.93
   2 !    3.9   0.0    0.0095        85      37      69 ..     326     360 ..     310     383 .. 0.67

  Alignments for each domain:
  == domain 1  score: 19.6 bits;  conditional E-value: 1.2e-07
  2OG-FeII_Oxy_4   1 lsvssYekgdvllnHdDvlegeRrva 26 
                     +s++ Y++g +ll+HdDv +g+R va
      KOO21733.1 145 MSCNAYRHGGHLLCHDDV-IGTRAVA 169
                     89****************.9***986 PP

  == domain 2  score: 3.9 bits;  conditional E-value: 0.0095
  2OG-FeII_Oxy_4  37 eddGGaLllsd.degdv.tksivPkwnqlvlFevk 69 
                     e+d Ga ++++ de++  ++si P+ n l l +  
      KOO21733.1 326 EEDHGAADVYKaDESSAgVTSIHPQTNALSLVRRG 360
                     45556665554144433489*********998873 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (391 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       376  (0.0209716); expected 358.6 (0.02)
Passed bias filter:                      269  (0.0150036); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.47u 0.24s 00:00:00.71 Elapsed: 00:00:00.40
# Mc/sec: 2947.29
//
Query:       KOO21734.1  [L=289]
Description: silent information regulator protein sir2 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (289 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       482  (0.0268838); expected 358.6 (0.02)
Passed bias filter:                      370  (0.020637); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.47u 0.23s 00:00:00.70 Elapsed: 00:00:00.42
# Mc/sec: 2080.51
//
Query:       KOO21735.1  [L=910]
Description: nedd4-like e3 ubiquitin-protein ligase wwp1, partial [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.2e-25   89.2  20.4    3.3e-07   30.3   1.0    4.9  5  WW               WW domain


Domain annotation for each model (and alignments):
>> WW  WW domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.3   1.0   1.8e-11   3.3e-07       1      31 []     390     420 ..     390     420 .. 0.99
   2 !   27.0   0.0     2e-10   3.6e-06       1      31 []     423     453 ..     423     453 .. 0.97
   3 ?   -1.5   0.1      0.16   2.9e+03       2      11 ..     567     576 ..     566     578 .. 0.72
   4 !   19.4   0.2   4.5e-08   0.00081       3      31 .]     624     650 ..     622     650 .. 0.80
   5 !   23.6   1.9   2.2e-09   3.9e-05       1      31 []     878     906 ..     878     906 .. 0.97

  Alignments for each domain:
  == domain 1  score: 30.3 bits;  conditional E-value: 1.8e-11
                 X-TTEEEEE-TTTT-EEEEETTT--EESS-- CS
          WW   1 LPpGWeeqwdpdsGrvYYyNheTgetqWekP 31 
                 LP+GW+e++dp+ + +YYy+    +t We+P
  KOO21735.1 390 LPEGWQEATDPSGKGTYYYHAASAQTAWERP 420
                 8*****************************9 PP

  == domain 2  score: 27.0 bits;  conditional E-value: 2e-10
                 X-TTEEEEE-TTTT-EEEEETTT--EESS-- CS
          WW   1 LPpGWeeqwdpdsGrvYYyNheTgetqWekP 31 
                 LPpGW++ +dp sG +YY +    +t+W  P
  KOO21735.1 423 LPPGWRALVDPASGGTYYAHAASARTSWQVP 453
                 8***************************987 PP

  == domain 3  score: -1.5 bits;  conditional E-value: 0.16
                 -TTEEEEE-T CS
          WW   2 PpGWeeqwdp 11 
                   GWee + p
  KOO21735.1 567 ANGWEEMRGP 576
                 57***98755 PP

  == domain 4  score: 19.4 bits;  conditional E-value: 4.5e-08
                 TTEEEEE-TTTT-EEEEETTT--EESS-- CS
          WW   3 pGWeeqwdpdsGrvYYyNheTgetqWekP 31 
                  GW+ +   +sG +YY+N++ get WekP
  KOO21735.1 624 HGWQIV-AGPSG-TYYFNPSSGETAWEKP 650
                 688555.55536.***************9 PP

  == domain 5  score: 23.6 bits;  conditional E-value: 2.2e-09
                 X-TTEEEEE-TTTT-EEEEETTT--EESS-- CS
          WW   1 LPpGWeeqwdpdsGrvYYyNheTgetqWekP 31 
                 LPp+W+++  p+ G  YYyN +T et+W +P
  KOO21735.1 878 LPPDWHAAQGPT-G-AYYYNARTSETSWNRP 906
                 8*******9999.9.***************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (910 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      3082  (0.1719); expected 358.6 (0.02)
Passed bias filter:                      474  (0.0264376); expected 358.6 (0.02)
Passed Vit filter:                       176  (0.0098165); expected 17.9 (0.001)
Passed Fwd filter:                        53  (0.0029561); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 1.95u 0.39s 00:00:02.34 Elapsed: 00:00:00.54
# Mc/sec: 5063.70
//
Query:       KOO21736.1  [L=334]
Description: thymus-specific serine protease [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    6.9e-48  163.5   0.4      9e-35  120.3   0.0    2.4  2  Peptidase_S28  Serine carboxypeptidase S28
  ------ inclusion threshold ------
       0.02   13.6   0.0       0.11   11.2   0.0    2.1  2  Peptidase_S37  PS-10 peptidase S37


Domain annotation for each model (and alignments):
>> Peptidase_S28  Serine carboxypeptidase S28
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  120.3   0.0     1e-38     9e-35      80     241 ..       2     161 ..       1     172 [. 0.87
   2 !   41.1   0.1   1.1e-14   9.7e-11     308     433 ..     175     321 ..     167     322 .. 0.71

  Alignments for each domain:
  == domain 1  score: 120.3 bits;  conditional E-value: 1e-38
  Peptidase_S28  80 stenlrylsseqaLaDlasfikalkqkfklsssskwitfGgSYsgsLaawarkkyPelvvgavaSSaPllakvdfkeylevvetslakvage.cak 174
                    s +nlrylsse aLaD+  fi+   +++   +s  wi++GgSYsg Laaw+r  yP  v g+va SaP+l k df+ey  v  + l++ +g  c k
     KOO21736.1   2 SATNLRYLSSELALADATTFIQWWGEQHASTTS-SWIAWGGSYSGQLAAWLRLRYPTSVIGSVAYSAPVLSKFDFWEYDAVCTNVLTALGGAgCSK 96 
                    789**********************88865555.5********************************************************88*** PP

  Peptidase_S28 175 aveqgfaeveellktk...egrqalkeelqlcskldektdkdvakffsniasefqgvvqysydgkanaal 241
                    + ++++++  ++l+ +   ++r++    l++c++ + +   dva +    ++ +q +vqy++ g+   a+
     KOO21736.1  97 RLTDAYSQAVSALAEGappSAREQAIRLLKACERPNST--DDVAILLGSAMGVVQSLVQYNNVGS---AH 161
                    ******98777776542226788888999999999887..899999**************65444...43 PP

  == domain 2  score: 41.1 bits;  conditional E-value: 1.1e-14
  Peptidase_S28 308 rqWlyqtCtEfgfyqttds............eaqlfgskvpvely.........i..dlCedvFgasynskkvsqavk..atnskYGgadnpkatn 378
                    rq  yq C+Efg   +  +            +          +++         +  +lC  +++ +  + ++ ++ +   tn + Gg  +++a+ 
     KOO21736.1 175 RQFYYQLCNEFGQNTCEPGdkgcaegvqpmpP---------PTVFapiahgdltQpnTLCIGLYNVTRTAPALWSNRQrgWTNVAQGG-RDLRASS 260
                    8999********98876664444333332221.........222211111111123379*****999888887665541268999***.99***** PP

  Peptidase_S28 379 vvfvnGalDPWhalg......lkkstdssvvpllikgaahcaDmypasssdsaelkaaral 433
                    ++fvnG  DP++ ++        ++    + ++ i +a+hca m  +ss+d++el+aa+a 
     KOO21736.1 261 ILFVNGRNDPYSSVSvlpeqlSFQQAMGGLRSVAIANASHCAGMERTSSADPPELAAAKAE 321
                    *************9954322223344445789**************************986 PP

>> Peptidase_S37  PS-10 peptidase S37
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   1.2e-05      0.11     134     195 ..      34      98 ..      26     121 .. 0.72
   2 ?   -1.2   0.0      0.07   6.3e+02     351     366 ..     258     273 ..     239     277 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 1.2e-05
  Peptidase_S37 134 knwistggskggmtatyyerfyprdmdgvvayvapndvvnkeds.aydr....ffarvgtdecrdkl 195
                      wi+ ggs  g  a++    yp  + g vay ap  v+ k d   yd     +++ +g   c  +l
     KOO21736.1  34 SSWIAWGGSYSGQLAAWLRLRYPTSVIGSVAYSAP--VLSKFDFwEYDAvctnVLTALGGAGCSKRL 98 
                    68********************************9..444444213444000044444555666655 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 0.07
  Peptidase_S37 351 arhmlfvygendpwga 366
                    a  +lfv g ndp+ +
     KOO21736.1 258 ASSILFVNGRNDPYSS 273
                    6789*********975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (334 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       449  (0.0250432); expected 358.6 (0.02)
Passed bias filter:                      389  (0.0216967); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.47u 0.25s 00:00:00.72 Elapsed: 00:00:00.39
# Mc/sec: 2551.41
//
Query:       KOO21737.1  [L=1116]
Description: serine threonine-protein phosphatase 6 regulatory ankyrin repeat subunit c-like protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.2e-69  230.9  23.2    7.3e-16   58.5   0.8    6.8  7  Ank_2        Ankyrin repeats (3 copies)
    6.7e-47  157.3  19.2    3.9e-10   40.0   0.1    9.3 10  Ank_4        Ankyrin repeats (many copies)
    2.6e-37  126.4  36.2    1.7e-05   25.0   0.8   12.0 12  Ank_5        Ankyrin repeats (many copies)
    1.3e-28  100.1   0.0    2.4e-28   99.2   0.0    1.4  1  Pkinase      Protein kinase domain
    5.1e-26   87.9  34.8       0.04   14.5   0.0   12.5 13  Ank_3        Ankyrin repeat
    8.3e-25   87.5   0.0    1.5e-24   86.7   0.0    1.3  1  Pkinase_Tyr  Protein tyrosine kinase
    4.6e-24   83.8  62.6    0.00043   20.6   0.4   12.4 12  Ank          Ankyrin repeat
    9.2e-05   22.5   7.9        5.9    7.1   0.0    6.8  9  SR1P         SR1 protein


Domain annotation for each model (and alignments):
>> Ank_2  Ankyrin repeats (3 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.9   0.3     1e-08   2.3e-05      30      75 ..      33      84 ..      19      91 .. 0.67
   2 !   48.4   1.2   4.8e-16   1.1e-12       8      77 ..      76     152 ..      75     158 .. 0.86
   3 !   46.8   1.0   1.4e-15   3.2e-12       8      77 ..     142     218 ..     140     224 .. 0.85
   4 !   40.9   0.4     1e-13   2.2e-10      25      80 ..     226     287 ..     217     290 .. 0.81
   5 !   58.5   0.8   3.3e-19   7.3e-16       8      80 ..     274     353 ..     273     356 .. 0.87
   6 !   49.2   0.1   2.7e-16   6.1e-13      20      82 ..     350     421 ..     348     422 .. 0.86
   7 ?   -2.7   0.0       4.2   9.5e+03      55      72 ..     426     443 ..     424     452 .. 0.62

  Alignments for each domain:
  == domain 1  score: 24.9 bits;  conditional E-value: 1e-08
       Ank_2 30 LhyAakngnleivklLle.h..ad...ndgrtpLhyAarsghleivklLlek 75
                L +A + g+  + +lLl+ h  +d   ++  tpL++A+ +gh  +v+lLl  
  KOO21737.1 33 LLIASETGHPTCTRLLLAaHavVDqaaSNDATPLYVACGKGHDGCVQLLLAA 84
                5667777777777777763366444446666777777777777777777733 PP

  == domain 2  score: 48.4 bits;  conditional E-value: 4.8e-16
       Ank_2   8 gnlelvklLl.egadpn..k.ngktaLhyAakngnleivklLle.h.....adndgrtpLhyAarsghleivklLlekga 77 
                 g   +v+lLl ++a ++    ng t+L++A++n++  +v+lLl+ h     ad++g tpL++A+ ++h  +v+lLl   a
  KOO21737.1  76 G---CVQLLLaAHAAVDeaAsNGGTPLYAACINDHGGCVRLLLAaHaaidqADRNGATPLYVACDKDHGGCVRLLLAAHA 152
                 5...9*****99999987527*************99*******9548877788***********************5444 PP

  == domain 3  score: 46.8 bits;  conditional E-value: 1.4e-15
       Ank_2   8 gnlelvklLl.egadpn.k..ngktaLhyAakngnleivklLle.h.....adndgrtpLhyAarsghleivklLlekga 77 
                 g   +v+lLl ++a ++    ng ++L++A+++g+ ++ +lLl+ h     ad +g tpL++A+ ++h ++v+lLl   a
  KOO21737.1 142 G---CVRLLLaAHAAIDqAaiNGGSPLIAACIKGHGDCTQLLLAaHatidqADGNGGTPLYAACINDHGDCVRLLLAAHA 218
                 5...9*****99999996268**********************95478676778899*******************5444 PP

  == domain 4  score: 40.9 bits;  conditional E-value: 1e-13
       Ank_2  25 ngktaLhyAakngnleivklLle.h..ad...ndgrtpLhyAarsghleivklLlekgadin 80 
                 n+ t+L++A+ +g+  +v+lLl+ h  +d   ++g tpL++A+ +gh  +v+lLl   a i+
  KOO21737.1 226 NDATPLYVACGKGHDGCVRLLLAaHaaVDeaaSNGGTPLYAACIKGHGGCVRLLLAAHAAID 287
                 789*******************944885566689*********************6555554 PP

  == domain 5  score: 58.5 bits;  conditional E-value: 3.3e-19
       Ank_2   8 gnlelvklLl.egadpn..k.ngktaLhyAakngnleivklLle.h..ad...ndgrtpLhyAarsghleivklLlekgadin 80 
                 g   +v+lLl ++a ++  + ng t+L++A+ +g+ ++v+lLl+ h  +d   ++g tpL++A+ +gh ++v+lLl+  ad++
  KOO21737.1 274 G---CVRLLLaAHAAIDqaDrNGATPLYAACGKGHGDCVRLLLAaHaaIDqaaSNGCTPLIAACDKGHDDCVQLLLDAHADVD 353
                 5...9*****99999996538**********************944884455699*********************8888886 PP

  == domain 6  score: 49.2 bits;  conditional E-value: 2.7e-16
       Ank_2  20 adpn..k.ngktaLhyAakngnleivklLle.h.....adndgrtpLhyAarsghleivklLlekgadinlk 82 
                 ad++  + +g t+L++A++ng+  +v+lLl+ h     ad +g+tpL++A+  g+ +ivklL+  ga i+l+
  KOO21737.1 350 ADVDklTsDGVTPLYAACINGHGGCVQLLLAaHavvdqADINGTTPLINACTAGSMDIVKLLVHAGARIDLR 421
                 677754269*********************954887777799*********************88*999875 PP

  == domain 7  score: -2.7 bits;  conditional E-value: 4.2
       Ank_2  55 tpLhyAarsghleivklL 72 
                 t+L +A   gh  i+++L
  KOO21737.1 426 TALDVAEARGHKVIARFL 443
                 566666555665555555 PP

>> Ank_4  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.6   0.0      0.42   9.5e+02      38      55 .]      32      49 ..      30      49 .. 0.93
   2 !   22.3   0.2   6.3e-08   0.00014       3      55 .]      64     115 ..      62     115 .. 0.94
   3 !   13.9   0.1   2.7e-05     0.061      16      55 .]     110     148 ..     109     148 .. 0.94
   4 !   19.8   0.1   3.8e-07   0.00085       3      55 .]     130     181 ..     128     181 .. 0.93
   5 !   28.6   0.1     7e-10   1.6e-06       3      55 .]     163     214 ..     161     214 .. 0.95
   6 !   26.4   0.1   3.3e-09   7.4e-06       3      55 .]     229     280 ..     228     280 .. 0.94
   7 !   24.0   0.1   1.9e-08   4.2e-05      16      55 .]     275     313 ..     274     313 .. 0.94
   8 !   40.0   0.1   1.8e-13   3.9e-10       3      55 .]     328     379 ..     327     379 .. 0.97
   9 !   16.9   0.0   3.3e-06    0.0073       2      54 ..     393     443 ..     385     444 .. 0.70
  10 ?   -1.1   0.0       1.5   3.3e+03       4      28 ..     723     747 ..     720     751 .. 0.74

  Alignments for each domain:
  == domain 1  score: 0.6 bits;  conditional E-value: 0.42
       Ank_4 38 alhiAakrgnveilklLl 55
                +l iA  +g++ +++lLl
  KOO21737.1 32 CLLIASETGHPTCTRLLL 49
                799*************98 PP

  == domain 2  score: 22.3 bits;  conditional E-value: 6.3e-08
       Ank_4   3 taLhyaaisgrlelvrlLlekgadinaqdnrsGetalhiAakrgnveilklLl 55 
                 t+L  a+ +g+  +v+lLl+  a +++   ++G t+l+ A+ + +  +++lLl
  KOO21737.1  64 TPLYVACGKGHDGCVQLLLAAHAAVDEA-ASNGGTPLYAACINDHGGCVRLLL 115
                 7899***************999999997.678********************8 PP

  == domain 3  score: 13.9 bits;  conditional E-value: 2.7e-05
       Ank_4  16 lvrlLlekgadinaqdnrsGetalhiAakrgnveilklLl 55 
                 +vrlLl+  a i+   +r+G t+l+ A+ + +  +++lLl
  KOO21737.1 110 CVRLLLAAHAAIDQA-DRNGATPLYVACDKDHGGCVRLLL 148
                 79****999999896.**********************98 PP

  == domain 4  score: 19.8 bits;  conditional E-value: 3.8e-07
       Ank_4   3 taLhyaaisgrlelvrlLlekgadinaqdnrsGetalhiAakrgnveilklLl 55 
                 t+L  a+ + +  +vrlLl+  a i+    ++G ++l+ A+ +g+ ++++lLl
  KOO21737.1 130 TPLYVACDKDHGGCVRLLLAAHAAIDQA-AINGGSPLIAACIKGHGDCTQLLL 181
                 89999**************999989887.89*********************8 PP

  == domain 5  score: 28.6 bits;  conditional E-value: 7e-10
       Ank_4   3 taLhyaaisgrlelvrlLlekgadinaqdnrsGetalhiAakrgnveilklLl 55 
                 ++L +a+i+g+ ++ +lLl+  a i+   +++G t+l+ A+ + + ++++lLl
  KOO21737.1 163 SPLIAACIKGHGDCTQLLLAAHATIDQA-DGNGGTPLYAACINDHGDCVRLLL 214
                 799****************999999886.***********************8 PP

  == domain 6  score: 26.4 bits;  conditional E-value: 3.3e-09
       Ank_4   3 taLhyaaisgrlelvrlLlekgadinaqdnrsGetalhiAakrgnveilklLl 55 
                 t+L  a+ +g+  +vrlLl+  a +++   ++G t+l+ A+ +g+  +++lLl
  KOO21737.1 229 TPLYVACGKGHDGCVRLLLAAHAAVDEA-ASNGGTPLYAACIKGHGGCVRLLL 280
                 7899***************999999997.678********************8 PP

  == domain 7  score: 24.0 bits;  conditional E-value: 1.9e-08
       Ank_4  16 lvrlLlekgadinaqdnrsGetalhiAakrgnveilklLl 55 
                 +vrlLl+  a i+   +r+G t+l+ A+ +g+ ++++lLl
  KOO21737.1 275 CVRLLLAAHAAIDQA-DRNGATPLYAACGKGHGDCVRLLL 313
                 79****999999896.***********************8 PP

  == domain 8  score: 40.0 bits;  conditional E-value: 1.8e-13
       Ank_4   3 taLhyaaisgrlelvrlLlekgadinaqdnrsGetalhiAakrgnveilklLl 55 
                 t+L +a+ +g+ ++v+lLl+  ad+++   ++G t+l+ A+ +g+  +++lLl
  KOO21737.1 328 TPLIAACDKGHDDCVQLLLDAHADVDKL-TSDGVTPLYAACINGHGGCVQLLL 379
                 799************************9.999********************8 PP

  == domain 9  score: 16.9 bits;  conditional E-value: 3.3e-06
       Ank_4   2 ltaLhyaaisgrlelvrlLlekgadinaqdnrsGetalhiAakrgnveilklL 54 
                 +t+L +a+ +g +++v+lL+  ga i+ +  +   tal+ A  rg++ i+++L
  KOO21737.1 393 TTPLINACTAGSMDIVKLLVHAGARIDLR--SASGTALDVAEARGHKVIARFL 443
                 67777888888888888888777777777..3467777777777776666665 PP

  == domain 10  score: -1.1 bits;  conditional E-value: 1.5
       Ank_4   4 aLhyaaisgrlelvrlLlekgadin 28 
                 +L ++ +   l+l+ ++le+ga ++
  KOO21737.1 723 VLQQCSHPHVLPLLGYCLEHGAPPC 747
                 5555556777889999999998765 PP

>> Ank_5  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.6   0.0      0.17   3.8e+02      20      38 ..      33      51 ..      28      58 .. 0.83
   2 !   16.4   0.3   3.7e-06    0.0083      12      53 ..      60      99 ..      48     100 .. 0.81
   3 !   19.3   0.4   4.7e-07     0.001      13      56 .]      94     135 ..      87     135 .. 0.92
   4 !   17.4   0.4   1.9e-06    0.0042       1      52 [.     114     164 ..     114     165 .. 0.84
   5 !   13.9   0.2   2.4e-05     0.053       6      53 ..     153     198 ..     147     199 .. 0.84
   6 !   12.0   0.2   8.9e-05       0.2      14      43 ..     192     221 ..     186     226 .. 0.82
   7 !   16.2   0.1   4.4e-06      0.01      17      53 ..     228     264 ..     219     264 .. 0.87
   8 !   18.9   0.2   6.1e-07    0.0014      13      53 ..     259     297 ..     253     298 .. 0.92
   9 !   25.0   0.8   7.6e-09   1.7e-05       1      53 [.     279     330 ..     279     331 .. 0.92
  10 !   13.9   0.0   2.3e-05     0.052      12      41 ..     324     351 ..     319     353 .. 0.84
  11 !   18.4   0.2   9.1e-07     0.002       1      39 [.     345     382 ..     345     390 .. 0.88
  12 !   22.3   0.3   5.2e-08   0.00012       2      56 .]     379     431 ..     378     431 .. 0.90

  Alignments for each domain:
  == domain 1  score: 1.6 bits;  conditional E-value: 0.17
       Ank_5 20 LhvAakygaadvvrlLlar 38
                L +A++ g++++ rlLla 
  KOO21737.1 33 LLIASETGHPTCTRLLLAA 51
                66899************44 PP

  == domain 2  score: 16.4 bits;  conditional E-value: 3.7e-06
       Ank_5 12 ldgggntpLhvAakygaadvvrlLlargadlnltdsrGltal 53
                ++    tpL vA+ +g+  +v+lLla +a+ +   s+G t+l
  KOO21737.1 60 SND--ATPLYVACGKGHDGCVQLLLAAHAAVDEAASNGGTPL 99
                333..4************************999999999998 PP

  == domain 3  score: 19.3 bits;  conditional E-value: 4.7e-07
       Ank_5  13 dgggntpLhvAakygaadvvrlLlargadlnltdsrGltaldlA 56 
                 +gg  tpL  A+ + +  +vrlLla +a++++ d +G t+l +A
  KOO21737.1  94 NGG--TPLYAACINDHGGCVRLLLAAHAAIDQADRNGATPLYVA 135
                 344..************************************998 PP

  == domain 4  score: 17.4 bits;  conditional E-value: 1.9e-06
       Ank_5   1 LlehgpadvnrldgggntpLhvAakygaadvvrlLlargadlnltdsrGlta 52 
                 Ll++  a+++  d++g tpL vA+ + +  +vrlLla +a++++   +G ++
  KOO21737.1 114 LLAAH-AAIDQADRNGATPLYVACDKDHGGCVRLLLAAHAAIDQAAINGGSP 164
                 56665.88899999**********************9999988766666555 PP

  == domain 5  score: 13.9 bits;  conditional E-value: 2.4e-05
       Ank_5   6 padvnrldgggntpLhvAakygaadvvrlLlargadlnltdsrGltal 53 
                  +d  + +gg  +pL+ A+ +g+ d+ +lLla +a +++ d++G t+l
  KOO21737.1 153 AIDQAAINGG--SPLIAACIKGHGDCTQLLLAAHATIDQADGNGGTPL 198
                 5555566666..9*********************************98 PP

  == domain 6  score: 12.0 bits;  conditional E-value: 8.9e-05
       Ank_5  14 gggntpLhvAakygaadvvrlLlargadln 43 
                 g+g tpL  A+ + + d+vrlLla +a+++
  KOO21737.1 192 GNGGTPLYAACINDHGDCVRLLLAAHAAID 221
                 3444*******************8877765 PP

  == domain 7  score: 16.2 bits;  conditional E-value: 4.4e-06
       Ank_5  17 ntpLhvAakygaadvvrlLlargadlnltdsrGltal 53 
                  tpL vA+ +g+  +vrlLla +a+ +   s+G t+l
  KOO21737.1 228 ATPLYVACGKGHDGCVRLLLAAHAAVDEAASNGGTPL 264
                 3********************9999999999999987 PP

  == domain 8  score: 18.9 bits;  conditional E-value: 6.1e-07
       Ank_5  13 dgggntpLhvAakygaadvvrlLlargadlnltdsrGltal 53 
                 +gg  tpL  A+ +g+  +vrlLla +a++++ d +G t+l
  KOO21737.1 259 NGG--TPLYAACIKGHGGCVRLLLAAHAAIDQADRNGATPL 297
                 344..***********************************8 PP

  == domain 9  score: 25.0 bits;  conditional E-value: 7.6e-09
       Ank_5   1 LlehgpadvnrldgggntpLhvAakygaadvvrlLlargadlnltdsrGltal 53 
                 Ll++  a+++  d++g tpL  A+ +g+ d+vrlLla +a++++  s+G t+l
  KOO21737.1 279 LLAAH-AAIDQADRNGATPLYAACGKGHGDCVRLLLAAHAAIDQAASNGCTPL 330
                 56665.88899999**************************************8 PP

  == domain 10  score: 13.9 bits;  conditional E-value: 2.3e-05
       Ank_5  12 ldgggntpLhvAakygaadvvrlLlargad 41 
                 ++g+  tpL+ A+ +g+ d+v+lLl+ +ad
  KOO21737.1 324 SNGC--TPLIAACDKGHDDCVQLLLDAHAD 351
                 5677..*******************66665 PP

  == domain 11  score: 18.4 bits;  conditional E-value: 9.1e-07
       Ank_5   1 LlehgpadvnrldgggntpLhvAakygaadvvrlLlarg 39 
                 Ll++  adv+ l  +g+tpL  A+ +g+  +v+lLla +
  KOO21737.1 345 LLDAH-ADVDKLTSDGVTPLYAACINGHGGCVQLLLAAH 382
                 78887.******************************554 PP

  == domain 12  score: 22.3 bits;  conditional E-value: 5.2e-08
       Ank_5   2 lehgpadvnrldgggntpLhvAakygaadvvrlLlargadlnltdsrGltaldlA 56 
                 l++  a v+  d +g+tpL++A+ +g+ d+v+lL+  ga ++l+ ++G tald+A
  KOO21737.1 379 LAAH-AVVDQADINGTTPLINACTAGSMDIVKLLVHAGARIDLRSASG-TALDVA 431
                 5554.77888889999*******************************8.****98 PP

>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   99.2   0.0   1.1e-31   2.4e-28       3     259 ..     672     961 ..     670     964 .. 0.77

  Alignments for each domain:
  == domain 1  score: 99.2 bits;  conditional E-value: 1.1e-31
                 EEEEEEEESSEEEEEEEET......TTTEEEEEEEEECHCHCHHHHHHHHHHHHHHHHHSCTTB--EEEEEEE.SSEEEEEEE--TTEBHHHHHHHHSS CS
     Pkinase   3 kleklGeGsfGkVykavek......etgkivAvKkikkekakkkkekkvlrEikilkklkhpnivrlyevfee.kdelylvleyveggeladllerkgs 94 
                 +++ +G+G++G+V+ a         +++k vAvK+ k  + +     +++rE+++l++++hp+++ l++++ e     +lv+ +++gg+la++l  + +
  KOO21737.1 672 EQRLIGSGGYGRVFTADALpslplwRRHKPVAVKRAKSGSHEL---ADLQREVSVLQQCSHPHVLPLLGYCLEhGAPPCLVFPLMRGGSLANRLWPREA 767
                 5789**********99765222222578889999888776655...568********************9988345679**************994444 PP

                 --HH................HHHHHHHHHHHHHHHHHHTT......EE-SS-SGGGEEEETTTEEEE-SGTTSEESSSSCS......BCTTTSCGGGS- CS
     Pkinase  95 lsee................eakkiakqilegleylHskg......iiHrDlKpeNiLidekgelKitDFGlakelesssk......ltsfvgtseYlA 165
                  +e+                +  +i++q   +l ylH         ++HrD KpeNiL+d++ +  ++D G+ak     +        +    t+ Yl 
  KOO21737.1 768 DPEHlrrlgigaslspltwrQRLRILRQATDALLYLHTPVpggkgaVVHRDFKPENILLDDELNAYLADTGFAKMDAGPEAskmksvSNALYLTRGYLD 866
                 44445556666666666665888**************865567778**************999**********98776666788888888999****** PP

                 HHHHTTSCBSHHHHHHHHHHHHHHHHHSS-STTTSSHHHHHHHHHHTHHHHHHHCT..SHH...HHHTTS....-HHHHHHHHHHT-SSGCCSTTHHHH CS
     Pkinase 166 PEvlkeneyskkvDvWslGvilyelltgkppfsgekgkekvekeldqlekilkilg..etkeklpeasei....seeakdllkkllkkdpkkRltaeel 258
                 P v+++  ys+ +D W+lG++l+  ltg+ p+s     +k e+++d+   +++i+     + +  ++ +     ++ +++  + l++   +kRlt++ +
  KOO21737.1 867 PSVVEGGVYSAMTDGWALGITLLVALTGRSPLSI---ITKCEEDFDE--DFADIVAaqLADATAGWPPHAvaafKDLVRSAASGLCHGSVRKRLTVAAA 960
                 *********************************4...4445566666..23333332222333444444411225555555567999999999999887 PP

                 H CS
     Pkinase 259 l 259
                 l
  KOO21737.1 961 L 961
                 7 PP

>> Ank_3  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.1       4.3   9.7e+03       5      23 ..      32      50 ..      31      54 .. 0.80
   2 !    8.0   0.0    0.0022         5       3      28 ..      63      87 ..      61      90 .. 0.83
   3 !    8.3   0.1    0.0018       3.9       1      29 [.      94     121 ..      94     123 .. 0.85
   4 !    9.2   0.1   0.00095       2.1       1      29 [.     127     154 ..     127     156 .. 0.86
   5 ?    4.3   0.0     0.037        83       1      29 [.     160     187 ..     160     189 .. 0.83
   6 !   11.3   0.1    0.0002      0.44       1      29 [.     193     220 ..     193     222 .. 0.86
   7 !    8.5   0.0    0.0016       3.5       3      28 ..     228     252 ..     226     255 .. 0.84
   8 !    8.5   0.1    0.0016       3.5       1      29 [.     259     286 ..     259     288 .. 0.85
   9 !   12.4   0.1   8.5e-05      0.19       1      29 [.     292     319 ..     292     321 .. 0.87
  10 !   14.5   0.0   1.8e-05      0.04       1      30 [.     325     353 ..     325     354 .. 0.94
  11 !    9.2   0.1   0.00093       2.1       1      24 [.     358     381 ..     358     392 .. 0.81
  12 !   10.1   0.0   0.00046         1       2      29 ..     392     418 ..     391     420 .. 0.86
  13 ?   -2.0   0.0       4.2   9.4e+03      11      29 ..     728     746 ..     727     747 .. 0.70

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 4.3
       Ank_3  5 pLhlAarsgnleivkfLle 23
                 L +A + g+++  ++Ll 
  KOO21737.1 32 CLLIASETGHPTCTRLLLA 50
                5889999999998888887 PP

  == domain 2  score: 8.0 bits;  conditional E-value: 0.0022
       Ank_3  3 etpLhlAarsgnleivkfLlenkgad 28
                 tpL++A+  g+   v++Ll   +a 
  KOO21737.1 63 ATPLYVACGKGHDGCVQLLLA-AHAA 87
                6************88*****9.5555 PP

  == domain 3  score: 8.3 bits;  conditional E-value: 0.0018
       Ank_3   1 nGetpLhlAarsgnleivkfLlenkgadv 29 
                 nG tpL+ A+ +++   v++Ll   +a +
  KOO21737.1  94 NGGTPLYAACINDHGGCVRLLLA-AHAAI 121
                 789************88*****9.55555 PP

  == domain 4  score: 9.2 bits;  conditional E-value: 0.00095
       Ank_3   1 nGetpLhlAarsgnleivkfLlenkgadv 29 
                 nG tpL++A+  ++   v++Ll   +a +
  KOO21737.1 127 NGATPLYVACDKDHGGCVRLLLA-AHAAI 154
                 799************88*****9.55555 PP

  == domain 5  score: 4.3 bits;  conditional E-value: 0.037
       Ank_3   1 nGetpLhlAarsgnleivkfLlenkgadv 29 
                 nG +pL  A+  g+ +  ++Ll   +a +
  KOO21737.1 160 NGGSPLIAACIKGHGDCTQLLLA-AHATI 187
                 6889************8888888.56655 PP

  == domain 6  score: 11.3 bits;  conditional E-value: 0.0002
       Ank_3   1 nGetpLhlAarsgnleivkfLlenkgadv 29 
                 nG tpL+ A+ +++ + v++Ll   +a +
  KOO21737.1 193 NGGTPLYAACINDHGDCVRLLLA-AHAAI 220
                 789*******************9.55555 PP

  == domain 7  score: 8.5 bits;  conditional E-value: 0.0016
       Ank_3   3 etpLhlAarsgnleivkfLlenkgad 28 
                  tpL++A+  g+   v++Ll   +a 
  KOO21737.1 228 ATPLYVACGKGHDGCVRLLLA-AHAA 252
                 6************88*****9.5555 PP

  == domain 8  score: 8.5 bits;  conditional E-value: 0.0016
       Ank_3   1 nGetpLhlAarsgnleivkfLlenkgadv 29 
                 nG tpL+ A+  g+   v++Ll   +a +
  KOO21737.1 259 NGGTPLYAACIKGHGGCVRLLLA-AHAAI 286
                 789************88*****9.55555 PP

  == domain 9  score: 12.4 bits;  conditional E-value: 8.5e-05
       Ank_3   1 nGetpLhlAarsgnleivkfLlenkgadv 29 
                 nG tpL+ A+  g+ + v++Ll   +a +
  KOO21737.1 292 NGATPLYAACGKGHGDCVRLLLA-AHAAI 319
                 799*******************9.55555 PP

  == domain 10  score: 14.5 bits;  conditional E-value: 1.8e-05
       Ank_3   1 nGetpLhlAarsgnleivkfLlenkgadvn 30 
                 nG+tpL  A+  g+ + v++Ll+  +adv+
  KOO21737.1 325 NGCTPLIAACDKGHDDCVQLLLD-AHADVD 353
                 79*********************.899997 PP

  == domain 11  score: 9.2 bits;  conditional E-value: 0.00093
       Ank_3   1 nGetpLhlAarsgnleivkfLlen 24 
                 +G tpL+ A+ +g+   v++Ll  
  KOO21737.1 358 DGVTPLYAACINGHGGCVQLLLAA 381
                 689************88****992 PP

  == domain 12  score: 10.1 bits;  conditional E-value: 0.00046
       Ank_3   2 GetpLhlAarsgnleivkfLlenkgadv 29 
                 G tpL  A+ +g+ +ivk+L+   ga +
  KOO21737.1 392 GTTPLINACTAGSMDIVKLLVH-AGARI 418
                 669*****************99.77766 PP

  == domain 13  score: -2.0 bits;  conditional E-value: 4.2
       Ank_3  11 rsgnl.eivkfLlenkgadv 29 
                 ++ ++ +++ ++le +ga++
  KOO21737.1 728 SHPHVlPLLGYCLE-HGAPP 746
                 55555347899***.89875 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   86.7   0.0   6.5e-28   1.5e-24       5     209 ..     674     901 ..     671     918 .. 0.87

  Alignments for each domain:
  == domain 1  score: 86.7 bits;  conditional E-value: 6.5e-28
                  EEEEEESSEEEEEEEEET..TTTSSEEEEEEEEESTTSSHHHHHHHHHHHHHHHTS-BTTB--EEEEEE.SSSSEEEEEE--TTEBHHHHHHHT.... CS
  Pkinase_Tyr   5 kklGeGafGkVvegtlkg..ekekkevkVavKtlkeeateeekeelleeakimkklkhpnivkllgvct.keepllivteyvkgGdLlkfLrkk.... 95 
                  + +G+G +G+V+ + +       +++  VavK  k++++e   ++l +e++++++++hp+++ llg c+ ++ p ++v+ +++gG+L + L  +    
   KOO21737.1 674 RLIGSGGYGRVFTADALPslPLWRRHKPVAVKRAKSGSHE--LADLQREVSVLQQCSHPHVLPLLGYCLeHGAPPCLVFPLMRGGSLANRLWPReadp 769
                  679*************99877788999*******777665..59*************************78889*****************99899** PP

                  ..........CTTTSBHHHHHHHHHHHHHHHHHHH......HTTEEEST-SGGGEEEEETTEEEE-STTTHEET...TTSSEEEETTSSTSGGGGS-H CS
  Pkinase_Tyr  96 ..........ekekltlkdllsfalqvAkGmeyLe......skklvHrdlaarNvLlsenkvvkisDfGLardi...ekddeyvkkeeaklpvkWmap 174
                            + ++lt ++ l++  q  +++ yL+      +  +vHrd    N+Ll+++  + ++D G a+     e ++  ++++   l   ++ p
   KOO21737.1 770 ehlrrlgigaSLSPLTWRQRLRILRQATDALLYLHtpvpggKGAVVHRDFKPENILLDDELNAYLADTGFAKMDagpEASKMKSVSNALYLTRGYLDP 867
                  **********9***********************9333332346***************************98733222233355556668889**** PP

                  HHHHHSEEEHHHHHHHHHHHHHHHHTTSSGTTTTS CS
  Pkinase_Tyr 175 EslkekkftsksDvWsfGvllwEiftlgespypgl 209
                   +++ ++++  +D W+ G++l   +t g+sp++ +
   KOO21737.1 868 SVVEGGVYSAMTDGWALGITLLVALT-GRSPLSII 901
                  *********************97777.88887665 PP

>> Ank  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.1       1.3   2.9e+03       6      23 ..      33      51 ..      32      59 .. 0.77
   2 !    8.8   0.1     0.001       2.3       4      23 ..      64      85 ..      61      91 .. 0.80
   3 !    9.7   0.3   0.00054       1.2       2      29 ..      95     123 ..      94     126 .. 0.77
   4 !   11.6   0.3   0.00013      0.29       1      24 [.     127     152 ..     127     158 .. 0.83
   5 ?    4.7   0.3     0.021        46       2      29 ..     161     189 ..     160     191 .. 0.75
   6 !    9.8   0.8   0.00049       1.1       2      25 ..     194     219 ..     193     227 .. 0.78
   7 !    8.0   0.2    0.0018       4.1       4      23 ..     229     250 ..     226     256 .. 0.80
   8 !    9.7   0.3   0.00055       1.2       2      29 ..     260     288 ..     259     291 .. 0.78
   9 !   11.5   0.4   0.00015      0.33       1      24 [.     292     317 ..     292     323 .. 0.79
  10 !   20.6   0.4   1.9e-07   0.00043       1      31 [.     325     356 ..     325     357 .. 0.89
  11 !   14.4   1.1   1.7e-05     0.039       1      24 [.     358     383 ..     358     391 .. 0.73
  12 !   15.3   0.1   9.3e-06     0.021       1      29 [.     391     420 ..     391     423 .. 0.88

  Alignments for each domain:
  == domain 1  score: -1.0 bits;  conditional E-value: 1.3
                HHHHHHHTTHHHHHHHH.T CS
         Ank  6 LHlAatngkkriiklLL.h 23
                L +A+  g++ +++lLL  
  KOO21737.1 33 LLIASETGHPTCTRLLLaA 51
                55788889999*****952 PP

  == domain 2  score: 8.8 bits;  conditional E-value: 0.001
                BHHHHHHHHTTHHHHHHHH..T CS
         Ank  4 TPLHlAatngkkriiklLL..h 23
                TPL +A+  g+  +++lLL  h
  KOO21737.1 64 TPLYVACGKGHDGCVQLLLaaH 85
                9******777788******544 PP

  == domain 3  score: 9.7 bits;  conditional E-value: 0.00054
                 SBBHHHHHH...HHTTHHHHHHHH..TTTSTTC CS
         Ank   2 GnTPLHlAa...tngkkriiklLL..hGAnlna 29 
                 G TPL  A+   ++g   +++lLL  h A +++
  KOO21737.1  95 GGTPLYAACindHGG---CVRLLLaaHAA-IDQ 123
                 66*******888888...******75544.655 PP

  == domain 4  score: 11.6 bits;  conditional E-value: 0.00013
                 TSBBHHHHHH...HHTTHHHHHHHH..TT CS
         Ank   1 dGnTPLHlAa...tngkkriiklLL..hG 24 
                 +G TPL +A+   ++g   +++lLL  h 
  KOO21737.1 127 NGATPLYVACdkdHGG---CVRLLLaaHA 152
                 799*******999888...******6443 PP

  == domain 5  score: 4.7 bits;  conditional E-value: 0.021
                 SBBHHHHHHHHTTHHHHHHHH.TTTSTTC CS
         Ank   2 GnTPLHlAatngkkriiklLL.hGAnlna 29 
                 G +PL  A+  g+ ++++lLL   A +++
  KOO21737.1 161 GGSPLIAACIKGHGDCTQLLLaAHATIDQ 189
                 5589*****667777******65577765 PP

  == domain 6  score: 9.8 bits;  conditional E-value: 0.00049
                 SBBHHHHHHHHTTHHHHHHHH..TTT CS
         Ank   2 GnTPLHlAatngkkriiklLL..hGA 25 
                 G TPL  A+ n++ ++++lLL  h A
  KOO21737.1 194 GGTPLYAACINDHGDCVRLLLaaHAA 219
                 66*******778888******75544 PP

  == domain 7  score: 8.0 bits;  conditional E-value: 0.0018
                 BHHHHHHHHTTHHHHHHHH..T CS
         Ank   4 TPLHlAatngkkriiklLL..h 23 
                 TPL +A+  g+  +++lLL  h
  KOO21737.1 229 TPLYVACGKGHDGCVRLLLaaH 250
                 9******777788******544 PP

  == domain 8  score: 9.7 bits;  conditional E-value: 0.00055
                 SBBHHHHHH...HHTTHHHHHHHH..TTTSTTC CS
         Ank   2 GnTPLHlAa...tngkkriiklLL..hGAnlna 29 
                 G TPL  A+   ++g   +++lLL  h A +++
  KOO21737.1 260 GGTPLYAACikgHGG---CVRLLLaaHAA-IDQ 288
                 66*******999999...******75544.655 PP

  == domain 9  score: 11.5 bits;  conditional E-value: 0.00015
                 TSBBHHHHHHHHTTHHHHHHHH..TT CS
         Ank   1 dGnTPLHlAatngkkriiklLL..hG 24 
                 +G TPL  A+  g+ ++++lLL  h 
  KOO21737.1 292 NGATPLYAACGKGHGDCVRLLLaaHA 317
                 799*******667777******6443 PP

  == domain 10  score: 20.6 bits;  conditional E-value: 1.9e-07
                 TSBBHHHHHHHHTTHHHHHHHH.TTTSTTCBT CS
         Ank   1 dGnTPLHlAatngkkriiklLL.hGAnlnald 31 
                 +G+TPL  A+  g+ ++++lLL   A+++ l+
  KOO21737.1 325 NGCTPLIAACDKGHDDCVQLLLdAHADVDKLT 356
                 7*********************5469*99876 PP

  == domain 11  score: 14.4 bits;  conditional E-value: 1.7e-05
                 TSBBHHHHHH...HHTTHHHHHHHH..TT CS
         Ank   1 dGnTPLHlAa...tngkkriiklLL..hG 24 
                 dG TPL  A+   ++g   +++lLL  h 
  KOO21737.1 358 DGVTPLYAACingHGG---CVQLLLaaHA 383
                 8*********777777...*****97443 PP

  == domain 12  score: 15.3 bits;  conditional E-value: 9.3e-06
                 TSBBHHHHHHHHTTHHHHHHHHT.TTSTTC CS
         Ank   1 dGnTPLHlAatngkkriiklLLh.GAnlna 29 
                 +G TPL  A+t g+ +i+klL+h GA +++
  KOO21737.1 391 NGTTPLINACTAGSMDIVKLLVHaGARIDL 420
                 799*****************9976997765 PP

>> SR1P  SR1 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.0       1.4   3.2e+03      12      31 ..      54      73 ..      52      75 .. 0.81
   2 ?   -2.3   0.0       2.2     5e+03      17      29 ..      92     104 ..      86     110 .. 0.72
   3 ?    1.4   0.0      0.16   3.5e+02      11      30 ..     119     138 ..     118     144 .. 0.86
   4 !    5.3   0.0    0.0093        21      11      33 ..     185     209 ..     183     211 .. 0.88
   5 ?   -0.8   0.0      0.74   1.7e+03      11      31 ..     218     238 ..     217     240 .. 0.85
   6 ?   -1.6   0.0       1.3     3e+03      17      30 ..     257     270 ..     251     275 .. 0.72
   7 !    7.1   0.0    0.0026       5.9      11      33 ..     284     308 ..     283     310 .. 0.86
   8 ?   -3.2   0.1       4.4   9.8e+03      12      31 ..     318     337 ..     317     342 .. 0.78
   9 ?    5.1   0.0     0.011        25      13      29 ..     352     368 ..     349     376 .. 0.82

  Alignments for each domain:
  == domain 1  score: -1.7 bits;  conditional E-value: 1.4
        SR1P 12 tIdhfedekVttLYgtCnqc 31
                ++d   ++  t LY  C+++
  KOO21737.1 54 VVDQAASNDATPLYVACGKG 73
                677777888999*****976 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 2.2
        SR1P  17 edekVttLYgtCn 29 
                  +++ t LY+ C 
  KOO21737.1  92 ASNGGTPLYAACI 104
                 5666688*****4 PP

  == domain 3  score: 1.4 bits;  conditional E-value: 0.16
        SR1P  11 atIdhfedekVttLYgtCnq 30 
                 a+Id  + ++ t LY  C++
  KOO21737.1 119 AAIDQADRNGATPLYVACDK 138
                 689***************84 PP

  == domain 4  score: 5.3 bits;  conditional E-value: 0.0093
        SR1P  11 atIdhfedekVttLYgtCn..qceC 33 
                 atId  ++++ t LY+ C    ++C
  KOO21737.1 185 ATIDQADGNGGTPLYAACIndHGDC 209
                 79****************6567888 PP

  == domain 5  score: -0.8 bits;  conditional E-value: 0.74
        SR1P  11 atIdhfedekVttLYgtCnqc 31 
                 a+Id   ++  t LY  C+++
  KOO21737.1 218 AAIDQAASNDATPLYVACGKG 238
                 57888899999*******976 PP

  == domain 6  score: -1.6 bits;  conditional E-value: 1.3
        SR1P  17 edekVttLYgtCnq 30 
                  +++ t LY+ C +
  KOO21737.1 257 ASNGGTPLYAACIK 270
                 5666788*****75 PP

  == domain 7  score: 7.1 bits;  conditional E-value: 0.0026
        SR1P  11 atIdhfedekVttLYgtCn..qceC 33 
                 a+Id  + ++ t LY+ C+   ++C
  KOO21737.1 284 AAIDQADRNGATPLYAACGkgHGDC 308
                 689***************9555677 PP

  == domain 8  score: -3.2 bits;  conditional E-value: 4.4
        SR1P  12 tIdhfedekVttLYgtCnqc 31 
                 +Id   +++ t L + C+++
  KOO21737.1 318 AIDQAASNGCTPLIAACDKG 337
                 68888889999999999865 PP

  == domain 9  score: 5.1 bits;  conditional E-value: 0.011
        SR1P  13 IdhfedekVttLYgtCn 29 
                 +d + +++Vt LY+ C 
  KOO21737.1 352 VDKLTSDGVTPLYAACI 368
                 788899**********6 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1116 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1010  (0.0563333); expected 358.6 (0.02)
Passed bias filter:                      471  (0.0262703); expected 358.6 (0.02)
Passed Vit filter:                        47  (0.00262145); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.84u 0.26s 00:00:01.10 Elapsed: 00:00:00.41
# Mc/sec: 8196.36
//
Query:       KOO21738.1  [L=948]
Description: kinesin-like protein klpa, partial [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
      3e-21   75.7   0.0    7.5e-21   74.4   0.0    1.6  2  Kinesin        Kinesin motor domain
    2.9e-10   40.3   1.1    4.6e-09   36.5   1.9    2.6  2  TPR_12         Tetratricopeptide repeat
    4.2e-06   26.4   0.2      0.001   18.9   0.1    3.3  2  TPR_7          Tetratricopeptide repeat
    3.3e-05   23.6   0.8      0.074   12.9   0.3    3.2  2  TPR_10         Tetratricopeptide repeat
    0.00011   21.6   2.0     0.0038   16.6   0.0    2.4  2  TPR_MalT       MalT-like TPR region
  ------ inclusion threshold ------
       0.06   13.5   6.6        0.4   10.9   0.3    3.5  2  TPR_2          Tetratricopeptide repeat
      0.088   13.1  14.4      0.067   13.4   1.2    4.3  4  TPR_8          Tetratricopeptide repeat
        0.4   10.6   9.4        2.9    7.9   0.3    3.4  4  TPR_1          Tetratricopeptide repeat
       0.51   10.8   3.8         21    5.7   0.4    3.3  3  NPV_P10        Nucleopolyhedrovirus P10 protein
        1.8    8.6   3.8         18    5.3   3.8    2.3  1  Baculo_PEP_C   Baculovirus polyhedron envelope protein, PEP, 
        4.2    7.3   7.3       0.71    9.8   2.0    2.4  2  HSBP1          Heat shock factor binding protein 1
        4.2    7.4  11.5         12    5.9  11.5    1.7  1  UPF0242        Uncharacterised protein family (UPF0242) N-ter
          5    6.6   7.6         37    3.8   0.0    2.5  2  Fzo_mitofusin  fzo-like conserved region
        6.9    6.0  17.2       0.28   10.6  11.1    1.7  2  Golgin_A5      Golgin subfamily A member 5
        8.4    5.2  20.5        8.4    5.2  15.7    2.3  2  Spc7           Spc7 kinetochore protein


Domain annotation for each model (and alignments):
>> Kinesin  Kinesin motor domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   74.4   0.0   6.3e-24   7.5e-21      56     331 ..     153     414 ..     129     416 .. 0.85
   2 ?   -3.8   0.4       3.9   4.7e+03     251     267 ..     504     520 ..     493     554 .. 0.48

  Alignments for each domain:
  == domain 1  score: 74.4 bits;  conditional E-value: 6.3e-24
                 HHHHHHHHHHHHHHHHTT...SEEEEEEEESTTSSHHHHHTBCTTTSBSHHHHHHHHHHHHHHHCTTTHEEEEEEEEEEEEEETTEEEETTSTTTTSTS CS
     Kinesin  56 eevyeetakplvesvleG...ynatifaYGqtgsGKTyTmegkeeeeeGiipraleelFesikkekeekekefsvkvsylEiYneeiyDLLeskkskkk 151
                 +    ++ +plv++v+     + +++++YG+ g+G +  m+g+ +    ++ ++ +++  +++   +    +++v + +  i +e ++DLLe++   + 
  KOO21738.1 153 AAKNADMLSPLVDNVMCEpdlKISCLLCYGEDGTGLSEAMTGN-Q---SLVTQTAQKMLAQTAGAGA----NCTVYLGVTLIAMELLFDLLEPS---SG 240
                 5555667788888888662225689*****************8.4...4899999998888877554....5899999999************9...45 PP

                 SEBEEEECTTSCCEEETTS--EEESSHHHHHHHHHHHHHHHTSTTSSCT.SHHCCSEEEEEEEEEEEETTTTTCEEEEEEEEEEEEEEECCCHHHHSST CS
     Kinesin 152 kklkiredskkgevyvkgltevevksaeevlellekgeknrkvaetkln.eeSSRSHavftitleqknlkeeteekvkisklnLvDLAGsErasktgaa 249
                 ++++i+e +  g v+++g ++++++sa  v  ll+k+++nr+    +l    S RS +v++++  +++ ++  +      ++ +v LA    ++++g  
  KOO21738.1 241 REMEITETQFAG-VTIHGGHWQSLSSAAAVGPLLAKASANRESTMASLGgGLSQRSCTVYSLRWGATDGSAYGN------SIIIVELAAPPIVRASGV- 331
                 579******988.****************************8777776516799**********9999776555......799********9999996. PP

                 CHHHHHHHHHHHHHHHHHHHHHHHHHHTCCTSTSCGGGSHHHHHTGGGHSSSSEEEE.EEEE-TBGGGHHHHHHHHHHHHHHC CS
     Kinesin 250 egerlkEaaniNkSLlaLgrvisaLaekkkskhipYRdSkLTrlLqdsLgGnsktlm.ivtvspssenleetlstlkfaerak 331
                  g +l++ ++iN+SL +L ++++a+ +kkk++  p RdS+LT+ L   Lg ++  l  +v v  ++ + +e   +l +a++a+
  KOO21738.1 332 PGLNLDDYCSINTSLKTLTKCLTAMGSKKKAATPPLRDSRLTHALGLVLGDDTALLHaLVFVPARRGKRAEACAALGWASKAS 414
                 7999**********************************************999877515555556669999999999999986 PP

  == domain 2  score: -3.8 bits;  conditional E-value: 3.9
                 HHHHHHHHHHHHHHHHH CS
     Kinesin 251 gerlkEaaniNkSLlaL 267
                 +er+kE +++   +  L
  KOO21738.1 504 SERVKEQQEVKDAIQDL 520
                 22333333332222222 PP

>> TPR_12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.0       2.5     3e+03      39      76 ..     581     618 ..     575     619 .. 0.85
   2 !   36.5   1.9   3.8e-12   4.6e-09       8      71 ..     634     697 ..     632     703 .. 0.96

  Alignments for each domain:
  == domain 1  score: -1.4 bits;  conditional E-value: 2.5
      TPR_12  39 pdhpltattlrnLgrlyralgryeeAlelleealaiae 76 
                 +  p+ + +l+  gr+y   g+ + A  ++  a++++e
  KOO21738.1 581 DGAPGMCDALIEKGRMYVDDGKNKYASLMFMSAIKLME 618
                 556888899999**********9999999999999887 PP

  == domain 2  score: 36.5 bits;  conditional E-value: 3.8e-12
      TPR_12   8 nlaavlrrlgrydeAlellekaleiarrllGpdhpltattlrnLgrlyralgryeeAlelleea 71 
                  la+++ + g  +eA++l+++a+ i + + Gpd p++a+ l+ Lg +y+++g+ e+A   leea
  KOO21738.1 634 ALADLYSAEGMDEEAIALYKQAYSIEKDSSGPDAPALARHLQKLGAAYEKQGKMEAATLTLEEA 697
                 59*******************************************************9999998 PP

>> TPR_7  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.9   0.1   8.5e-07     0.001       4      34 ..     634     664 ..     633     666 .. 0.90
   2 ?    3.7   0.0     0.062        74       4      24 ..     676     696 ..     674     711 .. 0.81

  Alignments for each domain:
  == domain 1  score: 18.9 bits;  conditional E-value: 8.5e-07
       TPR_7   4 nLarlysrlGdyeeAielyeqsLaltkdped 34 
                 +La+lys++G  eeAi ly+q+  ++kd ++
  KOO21738.1 634 ALADLYSAEGMDEEAIALYKQAYSIEKDSSG 664
                 8********************9999988776 PP

  == domain 2  score: 3.7 bits;  conditional E-value: 0.062
       TPR_7   4 nLarlysrlGdyeeAielyeq 24 
                  L+ +y+++G++e A   +e+
  KOO21738.1 676 KLGAAYEKQGKMEAATLTLEE 696
                 59***********99777776 PP

>> TPR_10  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.5   0.0    0.0031       3.7       8      39 ..     635     666 ..     633     669 .. 0.69
   2 !   12.9   0.3   6.2e-05     0.074       2      42 .]     671     711 ..     670     711 .. 0.96

  Alignments for each domain:
  == domain 1  score: 7.5 bits;  conditional E-value: 0.0031
      TPR_10   8 LanalrqrgrydeAealleealairrrllGpd 39 
                 La ++++ g  +eA al+++a++i +   Gpd
  KOO21738.1 635 LADLYSAEGMDEEAIALYKQAYSIEKDSSGPD 666
                 66677777777777777777777777777777 PP

  == domain 2  score: 12.9 bits;  conditional E-value: 6.2e-05
      TPR_10   2 AsslnNLanalrqrgrydeAealleealairrrllGpdHPd 42 
                 A+ l  L++a+ ++g+ ++A   leea ++ + ++GpdHP+
  KOO21738.1 671 ARHLQKLGAAYEKQGKMEAATLTLEEAGSVLEHAHGPDHPE 711
                 889999**********************************7 PP

>> TPR_MalT  MalT-like TPR region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.5   0.8     0.031        37      26     108 ..     462     545 ..     450     557 .. 0.89
   2 !   16.6   0.0   3.2e-06    0.0038      47     157 ..     594     707 ..     589     710 .. 0.88

  Alignments for each domain:
  == domain 1  score: 3.5 bits;  conditional E-value: 0.031
    TPR_MalT  26 qALallpeddllariaatavlGeasllqGdleaAlqalqeaek.larqadslhvallallqqaeilvaqGrLheAletyeqalq 108
                 +ALa+l+  +   r++ + v +e    + ++++A ++ q+a +   ++++ ++ a+  l qq e  +   +L++A++t +++++
  KOO21738.1 462 EALAQLKAAAEQKRGVLSEVEAELRASKAKVDDAKARNQAAKSeRVKEQQEVKDAIQDLKQQEEGVRSGKELQKAMDTLKKSIT 545
                 7999999999999*******999999999********999996378999***************9888899*******999886 PP

  == domain 2  score: 16.6 bits;  conditional E-value: 3.2e-06
    TPR_MalT  47 GeasllqGdleaAlqalqeaeklarqadslhv..allallqqaeilvaqGrLheAletyeqalqlateqglqqlplvgfllvlladllyEwndLeeAeq 143
                 G+ ++ +G+ + A  ++++a+kl+ +++  +   +++ +  +a+++ a G  +eA+ +y+qa    ++++++ +p+    l +l+  +  ++++e+A  
  KOO21738.1 594 GRMYVDDGKNKYASLMFMSAIKLMESIGLGRSafVVPPVSALADLYSAEGMDEEAIALYKQAYSIEKDSSGPDAPALARHLQKLGAAYEKQGKMEAATL 692
                 6777788888999999999*99977666665522799999**************************************999****************** PP

    TPR_MalT 144 hlqeGielleql.ep 157
                  l+e+  +le+  +p
  KOO21738.1 693 TLEEAGSVLEHAhGP 707
                 *****9999996455 PP

>> TPR_2  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.3   0.00033       0.4       6      33 ..     634     661 ..     633     662 .. 0.91
   2 ?    4.3   0.2     0.044        53       6      27 ..     676     697 ..     674     699 .. 0.86

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00033
       TPR_2   6 nlGlayyklgdyeeAleafekAleldPn 33 
                 +l+++y + g  eeA++++++A +++ +
  KOO21738.1 634 ALADLYSAEGMDEEAIALYKQAYSIEKD 661
                 699*******************998765 PP

  == domain 2  score: 4.3 bits;  conditional E-value: 0.044
       TPR_2   6 nlGlayyklgdyeeAleafekA 27 
                  lG ay+k+g+ e A   +e+A
  KOO21738.1 676 KLGAAYEKQGKMEAATLTLEEA 697
                 79***********998777776 PP

>> TPR_8  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.1       2.6   3.1e+03      16      32 ..     532     548 ..     530     550 .. 0.84
   2 ?   -1.3   0.1       2.9   3.5e+03       3      30 ..     589     616 ..     588     616 .. 0.85
   3 ?   13.4   1.2   5.6e-05     0.067       7      33 ..     635     661 ..     633     662 .. 0.94
   4 ?    6.4   0.3    0.0098        12       4      27 ..     674     697 ..     671     697 .. 0.89

  Alignments for each domain:
  == domain 1  score: -1.1 bits;  conditional E-value: 2.6
                 -HHHHHHHHHHHHHHHH CS
       TPR_8  16 dyeeAkeyyekaleldp 32 
                 ++++A+ +++k ++ d+
  KOO21738.1 532 ELQKAMDTLKKSITEDK 548
                 6899********98776 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 2.9
                 HHHHHHHHHHHTT-HHHHHHHHHHHHHH CS
       TPR_8   3 ayynlgsiylklgdyeeAkeyyekalel 30 
                 a+  +g+ y + g+ + A   ++ a++l
  KOO21738.1 589 ALIEKGRMYVDDGKNKYASLMFMSAIKL 616
                 678899****999999999999999886 PP

  == domain 3  score: 13.4 bits;  conditional E-value: 5.6e-05
                 HHHHHHHTT-HHHHHHHHHHHHHHHHH CS
       TPR_8   7 lgsiylklgdyeeAkeyyekaleldpd 33 
                 l+++y+  g  eeA++ y++a ++++d
  KOO21738.1 635 LADLYSAEGMDEEAIALYKQAYSIEKD 661
                 99**********************986 PP

  == domain 4  score: 6.4 bits;  conditional E-value: 0.0098
                 HHHHHHHHHHTT-HHHHHHHHHHH CS
       TPR_8   4 yynlgsiylklgdyeeAkeyyeka 27 
                 +++lg +y+k+g++e+A  ++e+a
  KOO21738.1 674 LQKLGAAYEKQGKMEAATLTLEEA 697
                 5789*************9988887 PP

>> TPR_1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   0.1       9.1   1.1e+04      14      26 ..     510     522 ..     509     522 .. 0.81
   2 ?   -2.7   0.0       5.2   6.2e+03      15      29 ..     531     545 ..     531     547 .. 0.84
   3 ?    7.9   0.3    0.0024       2.9       7      31 ..     635     659 ..     633     662 .. 0.88
   4 ?    7.6   0.2     0.003       3.6       6      21 ..     676     691 ..     671     697 .. 0.81

  Alignments for each domain:
  == domain 1  score: -3.4 bits;  conditional E-value: 9.1
                 TT-HHHHHHHHHH CS
       TPR_1  14 lgkydeAleyyek 26 
                 +++ ++A+++ ++
  KOO21738.1 510 QQEVKDAIQDLKQ 522
                 677899***9986 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 5.2
                 T-HHHHHHHHHHHHH CS
       TPR_1  15 gkydeAleyyekALe 29 
                 +++++A +  +k ++
  KOO21738.1 531 KELQKAMDTLKKSIT 545
                 5789******99986 PP

  == domain 3  score: 7.9 bits;  conditional E-value: 0.0024
                 HHHHHHHTT-HHHHHHHHHHHHHHS CS
       TPR_1   7 lGnayfklgkydeAleyyekALeln 31 
                 l+ +y   g+ +eA++ y++A +++
  KOO21738.1 635 LADLYSAEGMDEEAIALYKQAYSIE 659
                 7899*****************7775 PP

  == domain 4  score: 7.6 bits;  conditional E-value: 0.003
                 HHHHHHHHTT-HHHHH CS
       TPR_1   6 nlGnayfklgkydeAl 21 
                  lG+ay k+gk + A 
  KOO21738.1 676 KLGAAYEKQGKMEAAT 691
                 69***********995 PP

>> NPV_P10  Nucleopolyhedrovirus P10 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.0       9.7   1.2e+04      33      54 ..     335     356 ..     335     360 .. 0.74
   2 ?    4.1   0.0     0.053        63      20      66 ..     432     479 ..     426     494 .. 0.87
   3 ?    5.7   0.4     0.017        21       9      46 ..     544     581 ..     540     586 .. 0.90

  Alignments for each domain:
  == domain 1  score: -3.1 bits;  conditional E-value: 9.7
     NPV_P10  33 nlpdvtelnekLdaqsaqLael 54 
                 nl d   +n+ L  +++ L+++
  KOO21738.1 335 NLDDYCSINTSLKTLTKCLTAM 356
                 5667777888888888888876 PP

  == domain 2  score: 4.1 bits;  conditional E-value: 0.053
     NPV_P10  20 Vdalqqqvddvqenlpdvt.elnekLdaqsaqLaeletkvenIqdiLn 66 
                 V++lq  v++++e  p+++ e+ +++   +++La+l+++ e+   +L+
  KOO21738.1 432 VSSLQGVVASLEEPGPEMEsEMRDQMKPKPEALAQLKAAAEQKRGVLS 479
                 899*************99549***************998888777776 PP

  == domain 3  score: 5.7 bits;  conditional E-value: 0.017
     NPV_P10   9 IradikavddkVdalqqqvddvqenlpdvtelnekLda 46 
                 I +d +++  +++ l+q+v+d +++l  +   ++kLd+
  KOO21738.1 544 ITEDKAEMRRQLEELEQKVTDAKADLVGIGAQTDKLDD 581
                 7788899999******************9999999996 PP

>> Baculo_PEP_C  Baculovirus polyhedron envelope protein, PEP, C terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.3   3.8     0.015        18      25     102 ..     485     570 ..     456     576 .. 0.63

  Alignments for each domain:
  == domain 1  score: 5.3 bits;  conditional E-value: 0.015
  Baculo_PEP_C  25 irlqnvqilaqlatlldaietqLnalsedlksllaeldt.........rldtlltnLtdalnalqdtlrneLtnlnsiltnLlssvt 102
                   +r+ ++++  + a+  +a  +++++ ++++k+++++l++         +l++++++L++++ + + ++r +L+ l++++t+  +++ 
    KOO21738.1 485 LRASKAKVDDAKARNQAAKSERVKE-QQEVKDAIQDLKQqeegvrsgkELQKAMDTLKKSITEDKAEMRRQLEELEQKVTDAKADLV 570
                   4444444444444444444444444.5556666666655666666677777777777777777778888888888888877666655 PP

>> HSBP1  Heat shock factor binding protein 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.3       1.7     2e+03      26      34 ..      75      83 ..      65      85 .. 0.79
   2 ?    9.8   2.0   0.00059      0.71      13      46 ..     532     565 ..     531     568 .. 0.93

  Alignments for each domain:
  == domain 1  score: -1.3 bits;  conditional E-value: 1.7
       HSBP1 26 lsriDdMss 34
                l+ +DdMss
  KOO21738.1 75 LEDMDDMSS 83
                6779***98 PP

  == domain 2  score: 9.8 bits;  conditional E-value: 0.00059
       HSBP1  13 qlqdkFqtmsdqilsriDdMssriDdLEksiadl 46 
                 +lq+ ++t+ ++i++   +M + +++LE+ ++d 
  KOO21738.1 532 ELQKAMDTLKKSITEDKAEMRRQLEELEQKVTDA 565
                 8999***************************996 PP

>> UPF0242  Uncharacterised protein family (UPF0242) N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.9  11.5      0.01        12      82     182 ..     462     565 ..     414     578 .. 0.56

  Alignments for each domain:
  == domain 1  score: 5.9 bits;  conditional E-value: 0.01
     UPF0242  82 eglktkeealeelqeeeeeLkeeldakeeelerlkeenqqLqekleaiaedfeelkleleeq...L...aekqellqeyqetieeqrsvlekrqdqieq 174
                 e l++ + a e+ +    e + el a + ++   k +nq  +++  + ++++++  ++l++q   +   +e q+ +++++++i+e ++++ +   q e+
  KOO21738.1 462 EALAQLKAAAEQKRGVLSEVEAELRASKAKVDDAKARNQAAKSERVKEQQEVKDAIQDLKQQeegVrsgKELQKAMDTLKKSITEDKAEMRR---QLEE 557
                 34444444444444444455555555555555555555544444444444333333322222111211134445566677777777776653...5567 PP

     UPF0242 175 LeskVrDl 182
                 Le kV D 
  KOO21738.1 558 LEQKVTDA 565
                 77777775 PP

>> Fzo_mitofusin  fzo-like conserved region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.8   0.0     0.031        37      85     139 ..     421     475 ..     412     492 .. 0.83
   2 ?    2.6   5.0     0.073        88      85     129 ..     519     563 ..     494     571 .. 0.65

  Alignments for each domain:
  == domain 1  score: 3.8 bits;  conditional E-value: 0.031
  Fzo_mitofusin  85 sltsancshqvqqelsstfarlcqqvdetekeleeeikelekeiekleevqkkak 139
                    ++ s++ s+ + + l+ ++a l++   e+e+e+++++k   + +++l+++ ++ +
     KOO21738.1 421 EVYSSASSKALVSSLQGVVASLEEPGPEMESEMRDQMKPKPEALAQLKAAAEQKR 475
                    56799999******************************99999999988776654 PP

  == domain 2  score: 2.6 bits;  conditional E-value: 0.073
  Fzo_mitofusin  85 sltsancshqvqqelsstfarlcqqvdetekeleeeikelekeie 129
                    +l+ ++      +el+++++ l++++ e ++e++++++ele++++
     KOO21738.1 519 DLKQQEEGVRSGKELQKAMDTLKKSITEDKAEMRRQLEELEQKVT 563
                    444444444555788888888888888888888888888888775 PP

>> Golgin_A5  Golgin subfamily A member 5
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6  11.1   0.00023      0.28      45     154 ..     460     568 ..     416     596 .. 0.59
   2 ?   -3.5   0.3       4.6   5.5e+03     131     150 ..     858     877 ..     838     886 .. 0.49

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00023
   Golgin_A5  45 lsaeldelkqerdllreelqklnqqieqlrtelqdleaqqqaeaeslreqlqeleeqleeerkakeeveaelerlkeelryleeelvrskatlqsrikd 143
                 +  +l +lk+  ++ r  l +++ +++  +++++d +a++qa  ++  +++qe++++++  ++++e v    ++l++ +++l++  ++ ka+++ ++++
  KOO21738.1 460 KPEALAQLKAAAEQKRGVLSEVEAELRASKAKVDDAKARNQAAKSERVKEQQEVKDAIQDLKQQEEGV-RSGKELQKAMDTLKKSITEDKAEMRRQLEE 557
                 33344555555555555556666666666666666666666555555555555666555444433333.334556666666666666666666666666 PP

   Golgin_A5 144 rekeieklrnq 154
                  e+++ + +++
  KOO21738.1 558 LEQKVTDAKAD 568
                 66666555555 PP

  == domain 2  score: -3.5 bits;  conditional E-value: 4.6
   Golgin_A5 131 vrskatlqsrikdrekeiek 150
                 +r k+ +++r+k+ ++e e 
  KOO21738.1 858 QRMKERVKARMKRVNEEEEG 877
                 33333333333333333333 PP

>> Spc7  Spc7 kinetochore protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.1  10.4    0.0073       8.7     177     267 ..     433     524 ..     417     524 .. 0.85
   2 ?    5.2  15.7     0.007       8.4     144     242 ..     478     575 ..     475     581 .. 0.82

  Alignments for each domain:
  == domain 1  score: 5.1 bits;  conditional E-value: 0.0073
        Spc7 177 aeleeeleklqeaaeelesidkeeLeelreelaelkaeieekkkelaelqeqleeleekieelkeqkseleee.iaeaervleeckgwsese 267
                 ++l+  +++l+e   e+es  +++++   e+la+lka  e+k+  l+e++++l ++++k++++k++ + +++e ++e+++v+++ ++ +++e
  KOO21738.1 433 SSLQGVVASLEEPGPEMESEMRDQMKPKPEALAQLKAAAEQKRGVLSEVEAELRASKAKVDDAKARNQAAKSErVKEQQEVKDAIQDLKQQE 524
                 57777888899999999999999*****************************************9999998653788888888777777765 PP

  == domain 2  score: 5.2 bits;  conditional E-value: 0.007
        Spc7 144 leenlegleedkelLekqeeeldellpeleeekaeleeeleklqeaaeelesid..keeLeelreelaelkaeieekkkelaelqeqleeleekieelk 240
                 l+e  ++l++ k+++++ ++  ++++ e ++e++e+++ +++l++++e + s +  ++ + +l+++++e kae++   ++l+el++++++ ++++  + 
  KOO21738.1 478 LSEVEAELRASKAKVDDAKARNQAAKSERVKEQQEVKDAIQDLKQQEEGVRSGKelQKAMDTLKKSITEDKAEMR---RQLEELEQKVTDAKADLVGIG 573
                 667778999************************************999988844457788888888888888887...888888888888887776666 PP

        Spc7 241 eq 242
                 +q
  KOO21738.1 574 AQ 575
                 55 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (948 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2112  (0.117798); expected 358.6 (0.02)
Passed bias filter:                      699  (0.0389871); expected 358.6 (0.02)
Passed Vit filter:                       129  (0.00719505); expected 17.9 (0.001)
Passed Fwd filter:                        47  (0.00262145); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              15  [number of targets reported over threshold]
# CPU time: 1.20u 0.33s 00:00:01.53 Elapsed: 00:00:00.52
# Mc/sec: 5519.97
//
Query:       KOO21739.1  [L=394]
Description: porphobilinogen deaminase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.1e-74  248.9   0.0    4.2e-74  248.5   0.0    1.2  1  Porphobil_deam   Porphobilinogen deaminase, dipyromethane cof
    1.6e-16   60.4   0.3      3e-16   59.6   0.3    1.4  1  Porphobil_deamC  Porphobilinogen deaminase, C-terminal domain
  ------ inclusion threshold ------
       0.11   12.3   0.0       0.22   11.4   0.0    1.4  1  BAT              GAF and HTH_10 associated domain


Domain annotation for each model (and alignments):
>> Porphobil_deam  Porphobilinogen deaminase, dipyromethane cofactor binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  248.5   0.0     7e-78   4.2e-74       1     202 [.      45     256 ..      45     258 .. 0.95

  Alignments for each domain:
  == domain 1  score: 248.5 bits;  conditional E-value: 7e-78
  Porphobil_deam   1 irigtRkSkLAlaqaelvaeaLke........eeeveivtiktkGDkildkpLakiggkglFtkeleeaLlegeidlaVhSlKDlptelpeglel 87 
                     +++gtR+S+LAlaqa + +++Lke        e ++ei  ikt+GD +ldk+L++iggkglFtkel+  Ll+g +d++VhS+KD+pt l +g++l
      KOO21739.1  45 VKVGTRGSPLALAQAYETQRRLKEafpdelghEGAIEICVIKTTGDMVLDKALKEIGGKGLFTKELDVSLLNGAVDICVHSMKDVPTWLVDGTVL 139
                     68********************55555545433448*********************************************************** PP

  Porphobil_deam  88 aavlkredprDvlvvks..sleelpegavvgTsSlRRkaqlkklrpdlevkdlRGnvdtRlrkldegeydaiiLAaAGLkRlgleerisevlspe 180
                      + l+red+rD+++ ++  sl++l++gav+gT+SlRR+aql ++ p+++++++RGnv+tRl+kl+eg +da++LA+AGL+R++l+e+i+evl+ +
      KOO21739.1 140 PCNLPREDTRDAFISREggSLKSLKNGAVIGTASLRRQAQLLAMNPTFTCVNFRGNVQTRLKKLSEGIVDATLLAKAGLNRMNLAEHITEVLDWD 234
                     **************765899*************************************************************************** PP

  Porphobil_deam 181 ellpavgQGalavevrkedeel 202
                      +lpav+QGa+++++r++d+++
      KOO21739.1 235 MMLPAVAQGAIGIQCRENDQKM 256
                     *******************997 PP

>> Porphobil_deamC  Porphobilinogen deaminase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.6   0.3     5e-20     3e-16       2      74 ..     270     339 ..     269     340 .. 0.95

  Alignments for each domain:
  == domain 1  score: 59.6 bits;  conditional E-value: 5e-20
                      HHHHHHHHHHHHTT--TTSSEEEEEEEETTE.EEEEEEEE-TTS..S-EEEEEEEE-GGGHHHHHHHHHHHHH CS
  Porphobil_deamC   2 levlaERallkeLeGGCsvPiGvyaeveaneelkLkglvlsldglksaveeaeakgeleeaeelGkklaeell 74 
                       +v +ERa+l+ L+G+C +Pi+++a++++++ l+++gl++++dg++  + +++a g++++a+++G ++++el+
       KOO21739.1 270 VCVDCERAFLAALDGNCRTPIAGQAKLVNGK-LEFRGLIAKPDGTV--LYKTTASGAPADAVAIGEEAGKELK 339
                      599*************************888.************87..9999****99*************96 PP

>> BAT  GAF and HTH_10 associated domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   3.6e-05      0.22      21      56 ..     294     329 ..     286     338 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 3.6e-05
         BAT  21 aaeldcrveleglvprsdgevlvfftvdgadpeevr 56 
                 a+ +++ +e++gl++  dg+vl+  t++ga +++v+
  KOO21739.1 294 AKLVNGKLEFRGLIAKPDGTVLYKTTASGAPADAVA 329
                 6667899**********************9999875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (394 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       466  (0.0259914); expected 358.6 (0.02)
Passed bias filter:                      430  (0.0239835); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.48u 0.23s 00:00:00.71 Elapsed: 00:00:00.41
# Mc/sec: 2913.61
//
Query:       KOO21740.1  [L=265]
Description: hypothetical protein Ctob_001307 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (265 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       565  (0.0315132); expected 358.6 (0.02)
Passed bias filter:                      448  (0.0249875); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.44u 0.25s 00:00:00.69 Elapsed: 00:00:00.41
# Mc/sec: 1953.88
//
Query:       KOO21741.1  [L=751]
Description: cgmp-dependent protein kinase 1 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.1e-61  208.5   0.0    1.5e-61  208.0   0.0    1.2  1  Pkinase        Protein kinase domain
    3.8e-34  116.6   0.1    8.1e-17   61.1   0.0    2.6  2  cNMP_binding   Cyclic nucleotide-binding domain
    4.9e-28   98.1   0.0    7.8e-28   97.5   0.0    1.3  1  Pkinase_Tyr    Protein tyrosine kinase
    6.9e-05   22.3   0.0     0.0007   19.0   0.0    2.1  2  Kinase-like    Kinase-like
  ------ inclusion threshold ------
      0.061   12.3   0.0       0.11   11.4   0.0    1.3  1  Haspin_kinase  Haspin like kinase domain
       0.46   10.6   3.3       0.85    9.8   3.3    1.5  1  bZIP_1         bZIP transcription factor


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  208.0   0.0   5.2e-65   1.5e-61       4     264 .]     411     670 ..     408     670 .. 0.94

  Alignments for each domain:
  == domain 1  score: 208.0 bits;  conditional E-value: 5.2e-65
                 EEEEEEESSEEEEEEEETTTTEEEEEEEEECHCHCHHHH....HHHHHHHHHHHHHSCTTB--EEEEEEESSEEEEEEE--TTEBHHHHHHHHSS--HH CS
     Pkinase   4 leklGeGsfGkVykaveketgkivAvKkikkekakkkke....kkvlrEikilkklkhpnivrlyevfeekdelylvleyveggeladllerkgslsee 98 
                 l+ lG+G+f++V+ a++++t++ +A+K+i k+k  ++k      ++l+E   l +++hp+i  l   ++++++lyl+ e++ gg+l+ l+ r+g +se 
  KOO21741.1 411 LKPLGSGGFARVLLAKDSATRRLFAMKVIHKSKLLERKAdtrtAQILSEKLALSTFSHPFITGLHAHYQDSKYLYLLIELALGGDLFGLMDRHGLMSEP 509
                 689****************************99888777778899****************************************************** PP

                 HHHHHHHHHHHHHHHHHHTTEE-SS-SGGGEEEETTTEEEE-SGTTSEESSSSCSBCTTTSCGGGS-HHHHTTSCBSHHHHHHHHHHHHHHHHHSS-ST CS
     Pkinase  99 eakkiakqilegleylHskgiiHrDlKpeNiLidekgelKitDFGlakelessskltsfvgtseYlAPEvlkeneyskkvDvWslGvilyelltgkppf 197
                  a++++++++ +le+lH  ++++rDlKpeN+L+d++g +K++DFG+ak+l+ +  + s++gt++Y+APE+l+++++ + +D+W+lGv+++e++ g+p f
  KOO21741.1 510 MARFYVSSLALALEHLHLLEFVYRDLKPENVLLDSRGFVKLCDFGFAKKLTLDR-TYSQCGTPDYVAPEMLNGQGVNHGCDWWALGVMIFEMIVGNPAF 607
                 ****************************************************99.999***************************************** PP

                 TTSSHHHHHHHHHHTHHHHHHHCTSHH...HHHTTS-HHHHHHHHHHT-SSGCCSTT.....HHHHHTSGGG CS
     Pkinase 198 sgekgkekvekeldqlekilkilgetkeklpeaseiseeakdllkkllkkdpkkRlt.....aeellqhpyl 264
                  + +g++      ++  ++ +il + ++++p+++++s ++k l+  +l+++  +Rl+     a+++l+h ++
  KOO21741.1 608 TDMSGDT------MK--TFSNIL-KGDLQFPRETTFSASCKALVAGMLSVNLASRLGyayggANSVLSHAWF 670
                 *444443......33..455566.459******************************99999*********8 PP

>> cNMP_binding  Cyclic nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.9   0.0   9.4e-18   2.8e-14       3      87 ..     147     226 ..     145     228 .. 0.90
   2 !   61.1   0.0   2.7e-20   8.1e-17       2      84 ..     264     356 ..     263     359 .. 0.89

  Alignments for each domain:
  == domain 1  score: 52.9 bits;  conditional E-value: 9.4e-18
                   EE-TT-EEE-TTSB-SEEEEEEES-EEEEEEETTS.EEEEEEE-TTEEESHHHHHHTS--SSEEEESSTEEEEEEEHHHHHHHHH CS
  cNMP_binding   3 sfkagevifrqGdpadslyivlsGevrvyrlsedgkevvlavlgpGdlfGelalltgeprtatvvAltdsellalprddflellq 87 
                   + ka  v++++Gd+++++y++ sGe++v   +  g  v  +++++G++fGelal+++ prtat+++++d+ l++l+r +f++ ++
    KOO21741.1 147 QAKAQAVLVTEGDQGQHCYLLDSGELCV---KVKG--VEKDRIRAGQIFGELALMYNVPRTATIEVVSDASLFVLDRLAFRRTIR 226
                   568999**********************...5566..33479**************************************99775 PP

  == domain 2  score: 61.1 bits;  conditional E-value: 2.7e-20
                   EEE-TT-EEE-TTSB-..S.EEEEEEES-EEEE......EEETTS.E.EEEEEE-TTEEESHHHHHHTS--SSEEEESSTEEEEEEEHHHHHH CS
  cNMP_binding   2 rsfkagevifrqGdpa..d.slyivlsGevrvy......rlsedgke.vvlavlgpGdlfGelalltgeprtatvvAltdsellalprddfle 84 
                   + f  g +i+++G+++  d ++y++++G+v v        ++++gk+ +++++l++Gd+fGe+al+t+epr+++++A++++ +l+++rd+f+ 
    KOO21741.1 264 QTFDEGAMIIKEGTECndDpCMYFLKEGSVVVKqaipeeNRDSSGKTeRLVGILKSGDYFGERALITQEPRSCSIEAVSPTICLRVDRDAFKC 356
                   6899*********9974349************88999996777776659*****************************************975 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   97.5   0.0   2.6e-31   7.8e-28       3     237 ..     410     641 ..     408     656 .. 0.83

  Alignments for each domain:
  == domain 1  score: 97.5 bits;  conditional E-value: 2.6e-31
                  EEEEEEEESSEEEEEEEEETTTTSSEEEEEEEEE.STTSSHHHHHHHHHHHHHHHTS-BTTB--EEEEEESSSSEEEEEE--TTEBHHHHHHHTCTTT CS
  Pkinase_Tyr   3 lgkklGeGafGkVvegtlkgekekkevkVavKtl.keeateeekeelleeakimkklkhpnivkllgvctkeepllivteyvkgGdLlkfLrkkekek 99 
                  + k lG+G f++V  ++ + +++   +kV+ K+   e++ +++++++l+e   +++++hp i  l++ + +++ l++++e++ gGdL   + ++    
   KOO21741.1 410 ILKPLGSGGFARVLLAKDSATRRLFAMKVIHKSKlLERKADTRTAQILSEKLALSTFSHPFITGLHAHYQDSKYLYLLIELALGGDLFGLMDRH--GL 505
                  6789*************9999999999999886424556666699***********************************************99..66 PP

                  SBHHHHHHHHHHHHHHHHHHHHTTEEEST-SGGGEEEEETTEEEE-STTTHEETTTSSEEEETTSSTSGGGGS-HHHHHHSEEEHHHHHHHHHHHHHH CS
  Pkinase_Tyr 100 ltlkdllsfalqvAkGmeyLeskklvHrdlaarNvLlsenkvvkisDfGLardiekddeyvkkeeaklpvkWmapEslkekkftsksDvWsfGvllwE 197
                  ++      ++  +A ++e+L+  ++v rdl   NvLl+++ +vk++DfG a++++ d +y++         ++apE+l+ + +++  D W+ Gv+++E
   KOO21741.1 506 MSEPMARFYVSSLALALEHLHLLEFVYRDLKPENVLLDSRGFVKLCDFGFAKKLTLDRTYSQC----GTPDYVAPEMLNGQGVNHGCDWWALGVMIFE 599
                  666666667889******************************************666666544....4679*************************** PP

                  HHTTSSGTTTTS..HHHH.HHHHHHTTEES-BBTTSBHHHHHH CS
  Pkinase_Tyr 198 iftlgespypgl..knee.vleklkegkrlekpekcpeelyel 237
                  ++  g+  ++++  ++++ + + lk + + ++ ++ +++ + l
   KOO21741.1 600 MIV-GNPAFTDMsgDTMKtFSNILKGDLQFPRETTFSASCKAL 641
                  **9.999999994433331344446666777776666666655 PP

>> Kinase-like  Kinase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.7   0.0     0.088   2.6e+02      18      67 ..     412     464 ..     403     493 .. 0.71
   2 !   19.0   0.0   2.3e-07    0.0007     158     286 ..     523     651 ..     504     653 .. 0.78

  Alignments for each domain:
  == domain 1  score: 0.7 bits;  conditional E-value: 0.088
  Kinase-like  18 ellkkgdrsvvfevkdqetgeplavkvfllps...easkkdlerlkeqelair 67 
                  ++l+ g++  v+++kd +t   +a+kv    +   + +     ++  ++la+ 
   KOO21741.1 412 KPLGSGGFARVLLAKDSATRRLFAMKVIHKSKlleRKADTRTAQILSEKLALS 464
                  689999***************99998865432211555555555555555555 PP

  == domain 2  score: 19.0 bits;  conditional E-value: 2.3e-07
  Kinase-like 158 anLqakglvhgkftvdnllldekgglmlggft...aLvragtkvvlsevekgfaPpEllgsrggytrknktkmthkldaWqlGlviyriwclklPltl 252
                   +L+ +  v  +++++n+lld +g ++l +f+   +L  + t+ +   +   +  pE+l+ +          + h+ d W+lG+ i+ +   +  +t 
   KOO21741.1 523 EHLHLLEFVYRDLKPENVLLDSRGFVKLCDFGfakKLTLDRTYSQ-CGT-PDYVAPEMLNGQ---------GVNHGCDWWALGVMIFEMIVGNPAFTD 609
                  68999999**********************972213444444444.333.345556666664.........468****************99999999 PP

  Kinase-like 253 ateeakeew........kfklckkipekvkaLlkkfLqlsqe 286
                  +  +  + +        +f +    +   kaL++++L ++  
   KOO21741.1 610 MSGDTMKTFsnilkgdlQFPRETTFSASCKALVAGMLSVNLA 651
                  999999999999999999999999999999999999988765 PP

>> Haspin_kinase  Haspin like kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   3.6e-05      0.11     225     255 ..     527     557 ..     427     568 .. 0.73

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 3.6e-05
  Haspin_kinase 225 kfeFEHRdLhldniLvdknlnvtlidlklsR 255
                     +eF  RdL+ +n+L+d+ + v l+d+  ++
     KOO21741.1 527 LLEFVYRDLKPENVLLDSRGFVKLCDFGFAK 557
                    47999*********************98775 PP

>> bZIP_1  bZIP transcription factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   3.3   0.00029      0.85      25      61 ..       3      39 ..       2      42 .. 0.90

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.00029
                HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
      bZIP_1 25 qaeieeLerrvkaLekeNksLkseleelkkevekLks 61
                qae ++L rrv++L k N++L + ++ l+++    k+
  KOO21741.1  3 QAEAAALRRRVEELLKSNQELVKSNDLLSEQLRLAKQ 39
                8999*************************99876665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (751 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       519  (0.0289475); expected 358.6 (0.02)
Passed bias filter:                      453  (0.0252663); expected 358.6 (0.02)
Passed Vit filter:                        51  (0.00284455); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.66u 0.28s 00:00:00.94 Elapsed: 00:00:00.46
# Mc/sec: 4889.00
//
Query:       KOO21742.1  [L=605]
Description: stress protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.6e-58  197.3   0.0    7.9e-30  103.7   0.0    2.1  2  TerD      TerD domain
    5.3e-16   58.8   0.0    8.4e-16   58.1   0.0    1.3  1  C2        C2 domain


Domain annotation for each model (and alignments):
>> TerD  TerD domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   91.4   0.0   5.3e-30   4.7e-26      22     174 ..     169     325 ..     153     331 .. 0.91
   2 !  103.7   0.0   8.8e-34   7.9e-30      22     178 ..     382     533 ..     361     537 .. 0.88

  Alignments for each domain:
  == domain 1  score: 91.4 bits;  conditional E-value: 5.3e-30
        TerD  22 kvlvglgWdvaek....kgadfdlDasalllgengkvrsdedfvfynnlkspdgsvehtgdnltge...gegddeqievdlskvpaevekivfvvtiye 113
                  + vglgW++ +     ++a++dlD++++ lg +gk++ +e  v++ +l+s++g+v+h+gd+++g+   gegdde i ++l++vp++v  + +v t+  
  KOO21742.1 169 MLAVGLGWEPLAGkrslTEAAIDLDTACVALGFDGKINMSES-VYFAQLHSASGAVRHSGDEREGDadlGEGDDEMIHIQLERVPPSVCALYLVGTVA- 265
                 578******98888999********************97777.**********************966677*************************99. PP

        TerD 114 aeerkqnfgqvenayirvvdaatgeelarydlsedfsketalifgelyr..kngeWkfrAvGq 174
                   +++++f +v++a +r++d +tg e +r+        +ta  +g++ r    + W ++A+G+
  KOO21742.1 266 --TEGKSFADVKSARMRLIDMQTGVEKCRFYPGT-GGMHTACFLGRIARvsASTPWTLQAIGE 325
                 ..6999************************9995.5559**********666778******97 PP

  == domain 2  score: 103.7 bits;  conditional E-value: 8.8e-34
        TerD  22 kvlvglgWdvaekkgadfdlDasalllgengkvrsdedfvfynnlkspdgsvehtgdnltgegegddeqievdlskvpaevekivfvvtiyeaeerkqn 120
                 ++ +gl Wdv+  +g ++dlDasalll++n +   + d+vf+n+l+s+dgsv+h gd+++g+++gdde+i ++l+kv ++v  i fv++ y     +q+
  KOO21742.1 382 TLGLGLAWDVT--NGVNIDLDASALLLDANLR---QVDLVFFNKLSSSDGSVRHGGDEREGDEKGDDEKIFLNLAKVHPAVAYIGFVINSYS----GQE 471
                 567899***96..67************99965...569*****************************************************6....9** PP

        TerD 121 fgqvenayirvvdaatgeelarydls..edfsketalifgelyr..kngeWkfrAvGqGyag 178
                 + +v+ a + ++d+ + ++la+++++  + + k+ta+++g lyr    geW f+ + +  +g
  KOO21742.1 472 LDDVKGASCHLYDTGSCRDLAKFEIHncSFLDKHTAMVVGMLYRdaGTGEWAFEIISEAAQG 533
                 *************************95334678***********444579****99987765 PP

>> C2  C2 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.1   0.0   9.4e-20   8.4e-16       3     103 .]      15     129 ..      13     129 .. 0.90

  Alignments for each domain:
  == domain 1  score: 58.1 bits;  conditional E-value: 9.4e-20
                 EEEEEEEEESSSSSST........TSSCEEEEEEEEECEEEEEE-SCSSSSSSEEEEEEEEEESC...HTTSEEEEEEEEECS...SSTEEEEEEEEEE CS
          C2   3 levtvieAknLpnkdk........kgssdpyvkvsldgkqkakTrviknslnPvWnekftfevae...leeakLeveVfdndr...lskddfiGkveip 87 
                 +++t+i+++nL +kd+        k++sdpyv+vs+ g++  kT+v++++l P++++ f+  +     +++  + +++fd+d+    ++dd +G+v ip
  KOO21742.1  15 IDCTIISGRNLVAKDGtgmlsmgaKKTSDPYVVVSFGGQKLTKTEVKDKTLAPTYDHGFKSVLVGkqyQPDLPIVFSIFDSDKgilEGSDDPMGEVHIP 113
                 789***********9977777777777******************************9998555558999************998448999******** PP

                 GHHHHTTHHHHEEEEH CS
          C2  88 lstllsgeeaegwypl 103
                 l++l +g+e eg +p+
  KOO21742.1 114 LRELIKGKEREGYFPV 129
                 ***********99985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (605 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       318  (0.0177366); expected 358.6 (0.02)
Passed bias filter:                      306  (0.0170673); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.53u 0.26s 00:00:00.79 Elapsed: 00:00:00.45
# Mc/sec: 4068.43
//
Query:       KOO21743.1  [L=654]
Description: serine arginine-rich splicing factor 5-like protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.4e-20   71.6   0.0    1.5e-10   40.7   0.0    2.5  2  RRM_1     RNA recognition motif. (a.k.a. RRM, RBD, or RNP dom


Domain annotation for each model (and alignments):
>> RRM_1  RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.7   0.0   8.4e-15   1.5e-10       3      68 ..     269     330 ..     269     332 .. 0.94
   2 !   28.5   0.0   5.4e-11   9.6e-07       3      69 ..     359     419 ..     357     420 .. 0.94

  Alignments for each domain:
  == domain 1  score: 40.7 bits;  conditional E-value: 8.4e-15
                 EESETTTSSHHHHHHHHHTTSCEEEEEEEEETTTSEEEEEEEEESSHHHHHHHHHHHTTEEETTEE CS
       RRM_1   3 VgnLppdvteeeLkelFskfGpiksiklvrdetgkskgfafVeFeskedAekAlealngkklggre 68 
                 +gnL p  t+ +L ++   fGp ks+ + r    ++ gfaf+eFe++ dA+++++ ++   lg+++
  KOO21743.1 269 IGNLDPAFTQAQLAAYVTRFGPTKSVWVAR----SPPGFAFIEFETEQDAQACIDVVHDARLGHQN 330
                 8*****************************....7********************99888887766 PP

  == domain 2  score: 28.5 bits;  conditional E-value: 5.4e-11
                 EESETTTSSHHHHHHHHHTTSCEEEEEEEEETTTSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEE CS
       RRM_1   3 VgnLppdvteeeLkelFskfGpiksiklvrdetgkskgfafVeFeskedAekAlealngkklggrel 69 
                 ++nLp + +++eL + +++ G++  +++        +g + VeF+s ed ++A+++l+g  l+g+ +
  KOO21743.1 359 LKNLPASFSWRELQDEMRQLGSVIYADMDA------QGDGHVEFASAEDLDRAVQRLHGSRLDGNYI 419
                 79*********************9999988......6**************************9977 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (654 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       422  (0.0235373); expected 358.6 (0.02)
Passed bias filter:                      281  (0.0156729); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.57u 0.25s 00:00:00.82 Elapsed: 00:00:00.43
# Mc/sec: 4521.27
//
Query:       KOO21744.1  [L=277]
Description: hypothetical protein Ctob_001310 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (277 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       251  (0.0139997); expected 358.6 (0.02)
Passed bias filter:                      205  (0.011434); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.42u 0.23s 00:00:00.65 Elapsed: 00:00:00.40
# Mc/sec: 2099.79
//
Query:       KOO21745.1  [L=135]
Description: hypothetical protein Ctob_001313 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (135 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       533  (0.0297284); expected 358.6 (0.02)
Passed bias filter:                      322  (0.0179597); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.39u 0.24s 00:00:00.63 Elapsed: 00:00:00.40
# Mc/sec: 1003.99
//
Query:       KOO21746.1  [L=650]
Description: hypothetical protein Ctob_001312 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (650 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       468  (0.026103); expected 358.6 (0.02)
Passed bias filter:                      376  (0.0209716); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.58u 0.25s 00:00:00.83 Elapsed: 00:00:00.41
# Mc/sec: 4753.30
//
Query:       KOO21747.1  [L=443]
Description: mitogen-activated protein kinase 3 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    8.7e-58  195.7   0.0    1.1e-57  195.4   0.0    1.1  1  Pkinase         Protein kinase domain
    2.5e-26   92.5   0.0    7.1e-26   91.0   0.0    1.6  1  Pkinase_Tyr     Protein tyrosine kinase
     0.0021   18.1   0.7     0.0098   15.8   0.0    2.3  2  APH             Phosphotransferase enzyme family
  ------ inclusion threshold ------
      0.053   12.5   0.0       0.15   10.9   0.0    1.6  2  Haspin_kinase   Haspin like kinase domain
        0.2   10.4   0.0       0.27    9.9   0.0    1.1  1  Pkinase_fungal  Fungal protein kinase
       0.22   11.1   0.0       0.31   10.6   0.0    1.2  1  FTA2            Kinetochore Sim4 complex subunit FTA2


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  195.4   0.0   3.7e-61   1.1e-57       1     264 []      19     338 ..      19     338 .. 0.89

  Alignments for each domain:
  == domain 1  score: 195.4 bits;  conditional E-value: 3.7e-61
                 EEEEEEEEEESSEEEEEEEETTTTEEEEEEEEECHCHCHHHH...HHHHHHHHHHHHHSCTTB--EEEEEEE..................SSEEEEEEE CS
     Pkinase   1 yekleklGeGsfGkVykaveketgkivAvKkikkekakkkke...kkvlrEikilkklkhpnivrlyevfee..................kdelylvle 78 
                 ye ++ +G+G+fG+ ++a+++e++  vA+Kk+  + a   ++   k+++rE+k+l++++h+ni+rl + +                     +e+y+v++
  KOO21747.1  19 YEAKKMVGKGAFGVLISAFDHEENGPVAIKKVCLSGAMGWDRheaKSLIRELKLLQHFDHENIMRLRDLLVPagmmpagsscimagpsssFSEVYMVQD 117
                 788999*****************************99887777889*************************9*****************99******** PP

                 --TTEBHHHHHH....HHSS--HHHHHHHHHHHHHHHHHHHHTTEE-SS-SGGGEEEETTTEEEE-SGTTSEESSSSCS....BCTTTSCGGGS-HHHH CS
     Pkinase  79 yveggeladlle....rkgslseeeakkiakqilegleylHskgiiHrDlKpeNiLidekgelKitDFGlakelesssk....ltsfvgtseYlAPEvl 169
                 ++ ++ l+ +++     k+ +++e+++ +++q+l+gl+ +Hs++++HrDlKp+N+Li+++ el+i+DFGla+ ++ +      lt++v+t++Y+APE+l
  KOO21747.1 118 LMATD-LHYIIQsaarGKQPMTPEHIQYFTYQLLRGLKAIHSARVLHRDLKPSNLLINKDCELRICDFGLARGVDFDPAhaaqLTEYVVTRWYRAPELL 215
                 ***77.99999889755666*****************************************************9988888899**************** PP

                 .TTSCBSHHHHHHHHHHHHHHHHHSS-STTTSSHHHHHHHHHHTHHHHHHHCT....SHH...HHHTTS........................-HHHHH CS
     Pkinase 170 .keneyskkvDvWslGvilyelltgkppfsgekgkekvekeldqlekilkilg....etkeklpeasei........................seeakd 239
                  +++ y++++D+Ws+G+il+e+l+  +p +   +k      +d l ++  i+g    ++++++  + +                         ++ a+d
  KOO21747.1 216 tGNETYGPAIDMWSVGCILAEMLSALQPGN-VGDKAALFPGTDVLATLKLIIGslgaPSDLSFIDNAKAvayiqalsrtlappvplearypgaPPLALD 313
                 777788*********************999.444444555555555555555555564444444433337888999*********************** PP

                 HHHHHT-SSGCCSTTHHHHHTSGGG CS
     Pkinase 240 llkkllkkdpkkRltaeellqhpyl 264
                 llk+ll  +p+kR+ a e+l+hp+l
  KOO21747.1 314 LLKRLLLLEPSKRPNAVEALEHPFL 338
                 ***********************97 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   91.0   0.0   2.4e-29   7.1e-26       3     201 ..      21     240 ..      19     251 .. 0.85

  Alignments for each domain:
  == domain 1  score: 91.0 bits;  conditional E-value: 2.4e-29
                  EEEEEEEESSEEEEEEEEETTTTSSEEEEEEEEE....STTSSHHHHHHHHHHHHHHHTS-BTTB--EEEEEESSSS..................EEE CS
  Pkinase_Tyr   3 lgkklGeGafGkVvegtlkgekekkevkVavKtl....keeateeekeelleeakimkklkhpnivkllgvctkeep..................lli 78 
                   +k +G+GafG  +++  +    +++  Va+K++      + +++e ++l++e+k++++++h+ni++l  + + ++                   +++
   KOO21747.1  21 AKKMVGKGAFGVLISAFDH----EENGPVAIKKVclsgAMGWDRHEAKSLIRELKLLQHFDHENIMRLRDLLVPAGMmpagsscimagpsssfseVYM 114
                  6789*********999988....8899*****98654446778999**********************998883333234444555555666666777 PP

                  EEE--TTEBHHHHHHHT..CTTTSBHHHHHHHHHHHHHHHHHHHHTTEEEST-SGGGEEEEETTEEEE-STTTHEETTTSSEEEETTSSTSGGGGS.- CS
  Pkinase_Tyr  79 vteyvkgGdLlkfLrkk..ekekltlkdllsfalqvAkGmeyLeskklvHrdlaarNvLlsenkvvkisDfGLardiekddeyvkkeeaklpvkWm.a 173
                  v ++++  dL+  +++    k+++t +++  f++q+ +G++ ++s +++Hrdl   N L++++   +i+DfGLar +  d    ++ ++ +  +W+ a
   KOO21747.1 115 VQDLMAT-DLHYIIQSAarGKQPMTPEHIQYFTYQLLRGLKAIHSARVLHRDLKPSNLLINKDCELRICDFGLARGVDFDPAHAAQLTEYVVTRWYrA 211
                  7777764.6777666656678999*****************************************************999999999999999***98* PP

                  HHHHHHSE.EEHHHHHHHHHHHHHHHHTT CS
  Pkinase_Tyr 174 pEslkekk.ftsksDvWsfGvllwEiftl 201
                  pE l+ ++ +  + D+Ws G +l E+++ 
   KOO21747.1 212 PELLTGNEtYGPAIDMWSVGCILAEMLSA 240
                  ****98776999**************984 PP

>> APH  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.0   3.3e-06    0.0098     122     196 ..     119     187 ..      55     243 .. 0.82
   2 ?    0.3   0.1      0.19   5.6e+02      99     119 ..     335     356 ..     279     385 .. 0.66

  Alignments for each domain:
  == domain 1  score: 15.8 bits;  conditional E-value: 3.3e-06
                 TCCHHHHHHCHHHCCCGCCTCCHHHHHHHHHHHHHHHH--SSS-EEEE-SS-SGGGEEEC..TTEEEEE---TT- CS
         APH 122 dlellrqlesatarllaselldlleeleeqvlaalaallpgelptvllHgDlhpgNllvdpddgrvtGviDfeda 196
                  +++l ++ +++ar++++ +++ ++ ++ q+l+ l+a  +   ++++lH+Dl+p Nll++  d ++  + Df++a
  KOO21747.1 119 MATDLHYIIQSAARGKQPMTPEHIQYFTYQLLRGLKA-IH---SARVLHRDLKPSNLLIN-KDCEL-RICDFGLA 187
                 5667788888888899999999888888876665554.44...59***************.55665.57888887 PP

  == domain 2  score: 0.3 bits;  conditional E-value: 0.19
                 HHHHCCHHCH..-STTTB-SHH CS
         APH  99 geflaalhqvd.paalpladfl 119
                 + fla lh++   +++p +df+
  KOO21747.1 335 HPFLASLHACNeEPSAPAFDFA 356
                 5588999999533333333332 PP

>> Haspin_kinase  Haspin like kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.0      0.66     2e+03     122     139 ..      41      76 ..      34      89 .. 0.62
   2 ?   10.9   0.0   5.1e-05      0.15     230     256 ..     163     189 ..     153     221 .. 0.86

  Alignments for each domain:
  == domain 1  score: -2.6 bits;  conditional E-value: 0.66
  Haspin_kinase 122 kdkevvlKvipl..................evledv 139
                    ++ +v++K+++l                    l+ +
     KOO21747.1  41 ENGPVAIKKVCLsgamgwdrheakslirelKLLQHF 76 
                    588999999999766665555555444444444444 PP

  == domain 2  score: 10.9 bits;  conditional E-value: 5.1e-05
  Haspin_kinase 230 HRdLhldniLvdknlnvtlidlklsRl 256
                    HRdL+  n L++k  +  ++d+ l+R 
     KOO21747.1 163 HRDLKPSNLLINKDCELRICDFGLARG 189
                    *************************95 PP

>> Pkinase_fungal  Fungal protein kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   0.0   9.2e-05      0.27     316     384 ..     150     213 ..     140     230 .. 0.79

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 9.2e-05
  Pkinase_fungal 316 IkghrsLflkagiLHrDiSenNilitdskkegerkglLiDLDlakelsddssesga.rertGTleFmaie 384
                     ++g++  +  a++LHrD    N+li+     ++++  + D+ la  ++ d +++++  e + T+ + a e
      KOO21747.1 150 LRGLKAIH-SARVLHRDLKPSNLLIN-----KDCELRICDFGLARGVDFDPAHAAQlTEYVVTRWYRAPE 213
                     56888889.9****************.....789999999999999998877775545555555555555 PP

>> FTA2  Kinetochore Sim4 complex subunit FTA2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0    0.0001      0.31     160     212 ..     126     185 ..     106     188 .. 0.71

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.0001
        FTA2 160 IVKelellkeqeelevsqlp....kllrdlkklhklgIvvrDlkeenyidgk.....LvDls 212
                 I++    +++++++++++++    +llr lk +h++ +++rDlk++n++ +k     ++D++
  KOO21747.1 126 IIQS--AARGKQPMTPEHIQyftyQLLRGLKAIHSARVLHRDLKPSNLLINKdcelrICDFG 185
                 4444..56666667766654333389*********************975542222266666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (443 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       249  (0.0138881); expected 358.6 (0.02)
Passed bias filter:                      211  (0.0117686); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.46u 0.26s 00:00:00.72 Elapsed: 00:00:00.38
# Mc/sec: 3459.41
//
Query:       KOO21748.1  [L=1475]
Description: hypothetical protein Ctob_001314 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
     0.0029   16.7   0.2     0.0029   16.7   0.2    2.2  2  US30          Family of unknown function


Domain annotation for each model (and alignments):
>> US30  Family of unknown function
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.7       0.2   3.5e+03     202     236 ..     738     768 ..     724     778 .. 0.75
   2 !   16.7   0.2   1.6e-07    0.0029     175     268 ..     878     976 ..     874     983 .. 0.79

  Alignments for each domain:
  == domain 1  score: -3.2 bits;  conditional E-value: 0.2
        US30 202 aalqcqrdmllrqrrrarrlhavsegklqeekkrq 236
                  al++qrd l r r   +    v   kl+eek+r 
  KOO21748.1 738 KALEAQRDDLTRTRDEQKA---V-LRKLEEEKERA 768
                 68999***99998876543...3.35788887775 PP

  == domain 2  score: 16.7 bits;  conditional E-value: 1.6e-07
        US30 175 aadalglgerwlrlalshrdkhhasrtaalqcqrdmllrqrrrarrlhavsegklqeekkr.qsalvwnv.....earpfpsthqlivlpppvasappa 267
                 a + l l e  l l  +h  k   s t alq+  ++ l + +ra r  a   g l+ e ++ ++al+  +     +a  +  +   iv+ ppvasapp 
  KOO21748.1 878 AEERLALQEAMLSLDAAHEAKL-MSATHALQVSSEVPLADAKRAARKAATRIGALEAELEQlKTALMTSLlpptaNATFLTESDPPIVIDPPVASAPPM 975
                 4567999999****99998886.6889**************************999775442666665432221156666777788***********97 PP

        US30 268 v 268
                  
  KOO21748.1 976 G 976
                 5 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1475 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2416  (0.134754); expected 358.6 (0.02)
Passed bias filter:                      476  (0.0265492); expected 358.6 (0.02)
Passed Vit filter:                       125  (0.00697194); expected 17.9 (0.001)
Passed Fwd filter:                        52  (0.00290033); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 2.02u 0.34s 00:00:02.36 Elapsed: 00:00:00.60
# Mc/sec: 7355.67
//
Query:       KOO21749.1  [L=340]
Description: xyloglucanase 113 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.6e-13   50.0   0.0    5.4e-13   49.4   0.0    1.2  1  Nucleotid_trans  Nucleotide-diphospho-sugar transferase


Domain annotation for each model (and alignments):
>> Nucleotid_trans  Nucleotide-diphospho-sugar transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.4   0.0     3e-17   5.4e-13       4      87 ..     239     323 ..     237     335 .. 0.93

  Alignments for each domain:
  == domain 1  score: 49.4 bits;  conditional E-value: 3e-17
  Nucleotid_trans   4 enllvvAlDeealerckelgvpvlyltsk.gkdsakkdeefksktykkmswrkvrlllellklGynvllsDvDvvWlrnpfpllk 87 
                      +++lv+AlD +al+ ++ +g+p +++    g+   ++d+++++k + +++  kv+l+l+l+k+G++ +  D+D++ lr+pfp+++
       KOO21749.1 239 PHFLVGALDVKALRGLQTNGIPSFIMSGSdGTGLTTSDYGWGTKAFRELGLHKVQLVLNLAKTGVDCITVDADAFILRDPFPYIR 323
                      69************************9998999999***********************************************95 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (340 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       543  (0.0302861); expected 358.6 (0.02)
Passed bias filter:                      365  (0.0203581); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.28s 00:00:00.70 Elapsed: 00:00:00.41
# Mc/sec: 2514.84
//
Query:       KOO21750.1  [L=357]
Description: glycosyltransferase family 77 protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.9e-09   37.8   0.6    2.7e-09   37.3   0.6    1.2  1  Nucleotid_trans  Nucleotide-diphospho-sugar transferase


Domain annotation for each model (and alignments):
>> Nucleotid_trans  Nucleotide-diphospho-sugar transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.3   0.6   1.5e-13   2.7e-09     140     212 .]       6      91 ..       2      91 .. 0.89

  Alignments for each domain:
  == domain 1  score: 37.3 bits;  conditional E-value: 1.5e-13
  Nucleotid_trans 140 sglwDqdvfnlllregaake...............sglkvrvLdtalfvngkgyfvqvrdeeevktkkkpvavhanycs.gkedKlkrl 212
                      ++ wDq  f ++l+ ++ ++               +++ ++vL+ alf++g+++fv  r  + ++  ++p++vh+++++ g+++K++rl
       KOO21750.1   6 KNDWDQVLFGQVLQMDSEHAvdknrlrkmykksdgTHVMAGVLPVALFASGHTFFVS-RMAHLMH--EHPYMVHTTFQYgGAQGKRHRL 91 
                      57799999999999999888999999999999999**********************.5555555..59**********9999****97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (357 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       324  (0.0180713); expected 358.6 (0.02)
Passed bias filter:                      293  (0.0163422); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.24s 00:00:00.70 Elapsed: 00:00:00.40
# Mc/sec: 2663.71
//
Query:       KOO21751.1  [L=300]
Description: mitochondrial carrier [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    8.9e-22   76.8   9.6    1.5e-08   34.4   0.1    3.2  3  Mito_carr        Mitochondrial carrier protein


Domain annotation for each model (and alignments):
>> Mito_carr  Mitochondrial carrier protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.7   1.3   6.9e-08    0.0012       7      93 ..      28     110 ..      24     114 .. 0.87
   2 !   34.4   0.1   8.5e-13   1.5e-08       8      93 ..     120     197 ..     113     201 .. 0.92
   3 !   28.4   0.1   6.5e-11   1.2e-06       6      95 ..     208     292 ..     205     294 .. 0.91

  Alignments for each domain:
  == domain 1  score: 18.7 bits;  conditional E-value: 6.9e-08
                 HHHHHHHHHHHHHHHH.HHHHHHHHHHHHHCCCSSTTTSCSSHHHHHHHHHHHHHHHGGGTTHHHHHHHHHHHHHHHHHHHHHHHHHH CS
   Mito_carr   7 kellaGglagavatlv.ttPldvvKtrlqtqkksskksksaaildvlkkiykeeGlrglyrGllpnllrvapasalkfvlyetlkrll 93 
                 k+ l Gg+aga+a +v +  l  ++t +  q k + +     + ++++++y + G+  +y Gl+++ll+   +++   ++y  +  ll
  KOO21751.1  28 KKALGGGIAGALAMVVqVLALMWMRTTINFQHKYGMS-----TSEAMSTLYAQGGFGRFYDGLSVALLQAPLSRFGDTGAYAGMMALL 110
                 678999****998666477888889999889888887.....899*************************999999999999988877 PP

  == domain 2  score: 34.4 bits;  conditional E-value: 8.5e-13
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSTTTSCSSHHHHHHHHHHHHHHHGGGTTHHHHHHHHHHHHHHHHHHHHHHHHHH CS
   Mito_carr   8 ellaGglagavatlvttPldvvKtrlqtqkksskksksaaildvlkkiykeeGlrglyrGllpnllrvapasalkfvlyetlkrll 93 
                 + l++++a+a+  + +tP+d+vKt lq++++++        +  l + +k +G + ly+G+l + + + + +  +fv+y+++k  +
  KOO21751.1 120 KTLCASIAAALFRIGITPIDTVKTTLQVEGQRG--------MALLMERIKRDGPMTLYSGALGTSFATLIGHYPWFVTYDFIKARV 197
                 568999************************996........55899************************************9765 PP

  == domain 3  score: 28.4 bits;  conditional E-value: 6.5e-11
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSTTTSCSSHHHHHHHHHHHHHHHGGG.TTHHHHHHHHHHHHHHHHHHHHHHHHHHCT CS
   Mito_carr   6 lkellaGglagavatlvttPldvvKtrlqtqkksskksksaaildvlkkiykeeGlrgly.rGllpnllrvapasalkfvlyetlkrlllk 95 
                 +++ l G +++ v+ +v + + vvKt  qt+  + ++s       +  ki+ ++G++gl+ rGl+ +++ +  +++l  v+ ++l++l+ k
  KOO21751.1 208 VRSALLGFISAFVSDIVSNSVRVVKTAKQTADVEISYS------ATAAKIIASDGVSGLFlRGLGTKVISNGLQAMLFTVIWNYLQDLIDK 292
                 68899*****************************9974......4789**********887*****************9999999998866 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (300 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       635  (0.0354175); expected 358.6 (0.02)
Passed bias filter:                      438  (0.0244297); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.27s 00:00:00.75 Elapsed: 00:00:00.43
# Mc/sec: 2097.64
//
Query:       KOO21752.1  [L=278]
Description: hypothetical protein Ctob_007248 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.016   15.5   0.0      0.049   13.9   0.0    1.8  1  FinO_N     Fertility inhibition protein N terminal
        3.1    8.1   6.4       0.66   10.3   0.3    2.6  3  TetR_C_11  Tetracyclin repressor-like, C-terminal domain


Domain annotation for each model (and alignments):
>> FinO_N  Fertility inhibition protein N terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.0   5.5e-06     0.049      32      51 ..     176     195 ..     173     202 .. 0.93

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 5.5e-06
      FinO_N  32 tPPkWkvkkekLaekakreA 51 
                 tPP+++vkk++La + kreA
  KOO21752.1 176 TPPEFRVKKKRLAPRHKREA 195
                 9******************9 PP

>> TetR_C_11  Tetracyclin repressor-like, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.3   7.4e-05      0.66      13      60 ..       4      51 ..       2      57 .. 0.84
   2 ?   -0.1   0.1      0.13   1.2e+03      36      64 ..     105     129 ..      95     145 .. 0.51
   3 ?   -1.3   0.1      0.29   2.6e+03      53      95 ..     187     229 ..     178     246 .. 0.70

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 7.4e-05
   TetR_C_11 13 allralaealaspragallrallaeaqrdpelaealrerlleprraal 60
                + ++a+++   + + + + ++l+ae + dp+l++  +++ll +rr+a+
  KOO21752.1  4 EAADAVNRVRKHSAPSWVHACLVAEGKGDPQLHQKQHAHLLIRRRRAV 51
                5677888888888899999*******************9977777764 PP

  == domain 2  score: -0.1 bits;  conditional E-value: 0.13
   TetR_C_11  36 aeaqrdpelaealrerlleprraalravl 64 
                 ++     e ++al + l++  +a++ra+ 
  KOO21752.1 105 HAH---GEPHQALKT-LIHAGKARIRAMQ 129
                 333...333444444.4444444444433 PP

  == domain 3  score: -1.3 bits;  conditional E-value: 0.29
   TetR_C_11  53 leprraalravlrrAvarGelradadvelvldlllgpllyrll 95 
                 l+pr+++ +  +   +++  l+ada  e   ++l+gp+++  l
  KOO21752.1 187 LAPRHKREALSFLSEIEQEALPADAGQEDEEEALTGPIILSDL 229
                 5666666666666677778888888888888888888876655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (278 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       388  (0.0216409); expected 358.6 (0.02)
Passed bias filter:                      263  (0.014669); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.44u 0.25s 00:00:00.69 Elapsed: 00:00:00.42
# Mc/sec: 1994.78
//
Query:       KOO21753.1  [L=494]
Description: glycosyltransferase family 4 protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.7e-08   35.0   0.0    3.5e-08   33.9   0.0    1.5  1  Glyco_trans_1_4  Glycosyl transferases group 1
     0.0001   21.9   0.0    0.00036   20.1   0.0    1.9  1  Glycos_transf_1  Glycosyl transferases group 1
     0.0027   18.1   0.0     0.0064   16.9   0.0    1.6  1  Glyco_trans_1_2  Glycosyl transferases group 1


Domain annotation for each model (and alignments):
>> Glyco_trans_1_4  Glycosyl transferases group 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.9   0.0   5.9e-12   3.5e-08      31     130 ..     239     341 ..     220     345 .. 0.72

  Alignments for each domain:
  == domain 1  score: 33.9 bits;  conditional E-value: 5.9e-12
                      H..EEEEEES---..HHHHHHHT..T-T.TEEEE---THHHHHHHH-SEEEE--..---SHHHHHHHHTT-EEEE-TGGGTTT--..TTSSEE- CS
  Glyco_trans_1_4  31 d..vrlvivGdgprpeeleelaa..gleerveftGfvedlaellaaadvfvaPs..egfglkllEamaaglpvVatdvggiaevv..gengllv 116
                      +   r+ + Gdg+++++++e a   +   + +f G ++  ++ l+  +vfv+Ps  e ++ ++ Ea+a+g+ vV  + +  +e+     n    
       KOO21753.1 239 EthTRVDVFGDGDDASAIKEAATasK--LNLHFPGARDHADPTLHGYKVFVNPSqtEVLSTTTAEALAMGKFVVIERHPS-NEFFypFANVRTY 329
                      134899******95569987665344..57*******88***************9999****************999866.6655532222222 PP

                      -TT-HHHHHHHHHH CS
  Glyco_trans_1_4 117 ppgdpealaeailr 130
                      +   p+++ +a+ +
       KOO21753.1 330 S--TPAEFRAALRE 341
                      2..46666666655 PP

>> Glycos_transf_1  Glycosyl transferases group 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.1   0.0   6.1e-08   0.00036      44     124 ..     238     314 ..     193     318 .. 0.84

  Alignments for each domain:
  == domain 1  score: 20.1 bits;  conditional E-value: 6.1e-08
                      HCSCEEEEEES.STTHHHHHHHHHHHCTTCGGGEEECCHSSSHHHHHHCESEEEEEESSBSS-HHHHHHHHTT--EEEETT CS
  Glycos_transf_1  44 lnpnvklviaGngeeekelkklaeelelsdnviflgevsredleellknadifvlpsisEgfGivllEAmaaglpviasna 124
                       +  +++ + G+g++   +k+ a + +l  n++f g  +    +  l+  ++fv ps++E + ++  EA+a g+ v++  +
       KOO21753.1 238 VETHTRVDVFGDGDDASAIKEAATASKL--NLHFPGARD--HADPTLHGYKVFVNPSQTEVLSTTTAEALAMGKFVVIERH 314
                      5667788999******************..********9..556677888***************************8765 PP

>> Glyco_trans_1_2  Glycosyl transferases group 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   0.0   1.1e-06    0.0064       2      62 ..     286     345 ..     285     362 .. 0.89

  Alignments for each domain:
  == domain 1  score: 16.9 bits;  conditional E-value: 1.1e-06
  Glyco_trans_1_2   2 vLnpsrsespnlrlfEaaacGafaltddaegleelftpgkevilfedleelaekiryllan 62 
                      ++nps+ e +++ + Ea+a+G f++ ++ +   e+f p   v ++++++e+ +++r+ la+
       KOO21753.1 286 FVNPSQTEVLSTTTAEALAMGKFVVIER-HPSNEFFYPFANVRTYSTPAEFRAALRETLAS 345
                      789************************5.67888999999****************99884 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (494 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       328  (0.0182944); expected 358.6 (0.02)
Passed bias filter:                      302  (0.0168442); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.49u 0.28s 00:00:00.77 Elapsed: 00:00:00.44
# Mc/sec: 3408.78
//
Query:       KOO21754.1  [L=313]
Description: n-alpha-acetyltransferase 40-like protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
  ------ inclusion threshold ------
      0.014   15.1   0.2      0.025   14.3   0.2    1.3  1  Flavi_capsid  Flavivirus capsid protein C


Domain annotation for each model (and alignments):
>> Flavi_capsid  Flavivirus capsid protein C
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   0.2   1.4e-06     0.025      50      92 ..       1      43 [.       1      47 [. 0.96

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 1.4e-06
  Flavi_capsid 50 ftaiaptpallkrWrtvkkkqAlkvLkkfkkevgtlldslnrR 92
                  +ta++pt al +r ++vkk+q  ++L+k k  v++l ++ ++R
    KOO21754.1  1 MTATPPTDALSARKGKVKKQQRAEALRKEKERVSRLREAAHKR 43
                  79**********************************9999998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (313 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       673  (0.037537); expected 358.6 (0.02)
Passed bias filter:                      441  (0.024597); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.26s 00:00:00.74 Elapsed: 00:00:00.44
# Mc/sec: 2153.91
//
Query:       KOO21755.1  [L=491]
Description: kinetochore protein ndc80-like protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    5.2e-12   45.7   0.4    5.2e-12   45.7   0.4    4.4  5  DUF5595        Domain of unknown function (DUF5595)
      2e-11   43.8   0.0    4.5e-11   42.6   0.0    1.6  1  Ndc80_HEC      HEC/Ndc80p family
      0.001   19.3   1.6        3.1    8.1   0.0    3.9  3  HALZ           Homeobox associated leucine zipper
     0.0012   18.2  38.0     0.0013   18.1  13.7    3.5  3  GAS            Growth-arrest specific micro-tubule binding
  ------ inclusion threshold ------
      0.037   11.6  37.5       0.11   10.0  14.4    2.1  2  DUF3584        Protein of unknown function (DUF3584)
       0.59   10.0   2.9        6.8    6.6   0.0    2.6  3  AAA_31         AAA domain
       0.75    9.9   7.7        0.1   12.6   0.7    3.3  3  Adhesin_P1_N   Adhesin P1 N-terminal domain
        1.1    9.4  50.6      0.015   15.5  24.4    2.8  3  ATG16          Autophagy protein 16 (ATG16)
        2.8    7.7  11.2       0.13   12.1   2.1    2.9  3  USP8_interact  USP8 interacting
        3.5    7.1  43.7       0.14   11.7  19.6    3.9  4  Filament       Intermediate filament protein
        6.3    5.0  12.3       0.51    8.6   0.1    3.0  3  Gp58           gp58-like protein
        6.6    7.3  59.1       0.26   11.8  19.1    5.1  2  APG6_N         Apg6 coiled-coil region
        9.8    5.8   9.4       0.49   10.1   1.5    2.4  2  WASH-7_C       WASH complex subunit 7, C-terminal


Domain annotation for each model (and alignments):
>> DUF5595  Domain of unknown function (DUF5595)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.7   0.4   3.8e-15   5.2e-12       3      71 ..      79     147 ..      77     149 .. 0.94
   2 ?   -1.0   0.1       1.4   1.9e+03      41      58 ..     176     193 ..     160     208 .. 0.60
   3 ?    3.2   0.1     0.068        93      50      70 ..     223     243 ..     209     246 .. 0.85
   4 ?   -0.3   0.4      0.83   1.1e+03      45      64 ..     257     276 ..     243     282 .. 0.70
   5 ?   -2.8   1.4       5.1   7.1e+03      30      72 ..     360     402 ..     357     403 .. 0.70

  Alignments for each domain:
  == domain 1  score: 45.7 bits;  conditional E-value: 3.8e-15
     DUF5595   3 eedgievnkLFldYtvkcYekFmqgeDtFeeedaeleskLkelynvdeaqlesleeeekrLeeEierle 71 
                  ++ + + k++ldY++  Y+ F++g D+ ++ d+++   ++ +++ +e+++++l++e+ rL+ E e+l+
  KOO21755.1  79 VDEDAANFKMYLDYLARGYKLFLEGVDDMSPLDEQMRLTFDAKNASIEQDVRNLTAEHARLHAEAESLQ 147
                 56677788**********************************************************998 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 1.4
     DUF5595  41 kLkelynvdeaqleslee 58 
                 kL+e    +e++l + ++
  KOO21755.1 176 KLQEAIDKYERELSDVQQ 193
                 344444444444444444 PP

  == domain 3  score: 3.2 bits;  conditional E-value: 0.068
     DUF5595  50 eaqlesleeeekrLeeEierl 70 
                  a++e++e+e+  Le E++ l
  KOO21755.1 223 PADVENMERERAALEAELSGL 243
                 5799*************9865 PP

  == domain 4  score: -0.3 bits;  conditional E-value: 0.83
     DUF5595  45 lynvdeaqlesleeeekrLe 64 
                      +++le+lee+  +L+
  KOO21755.1 257 EAREEQRRLERLEEKVNKLN 276
                 55556788899998888887 PP

  == domain 5  score: -2.8 bits;  conditional E-value: 5.1
     DUF5595  30 tFeeedaeleskLkelynvdeaqlesleeeekrLeeEierlek 72 
                 tF e+ + l++ L++  ++ e   ++  +e  + + E e+le 
  KOO21755.1 360 TFVEQLEVLKATLEREGHQREIASAEHAAEMSKRKAETESLEE 402
                 5667777777778777776666666666777777788888775 PP

>> Ndc80_HEC  HEC/Ndc80p family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.6   0.0   3.3e-14   4.5e-11      69     132 ..       2      64 ..       1      68 [. 0.97

  Alignments for each domain:
  == domain 1  score: 42.6 bits;  conditional E-value: 3.3e-14
   Ndc80_HEC  69 kdfssifkfLykr.ldpsyefqkkieeevvkilkelrYPfaesisKsqlaAvgtphtwptllaaL 132
                 ++f+ +++fL+kr + ps+e+ + +++e+++i+kel+YPf+  + K+ l     ph wp+ll+aL
  KOO21755.1   2 REFVFMVTFLLKRvFGPSFEVPTPLDDELPRIFKELGYPFQ--LPKHALRNNIVPHDWPKLLGAL 64 
                 79***********99**************************..********************99 PP

>> HALZ  Homeobox associated leucine zipper
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.1   0.0    0.0023       3.1       3      32 ..     125     154 ..     124     157 .. 0.85
   2 !    7.7   0.0    0.0031       4.2      19      41 ..     224     246 ..     223     254 .. 0.92
   3 ?   -2.0   0.1       3.2   4.4e+03      29      40 ..     266     277 ..     264     278 .. 0.85

  Alignments for each domain:
  == domain 1  score: 8.1 bits;  conditional E-value: 0.0023
        HALZ   3 LErDYdvLKasYdaLksdydsLkkenekLk 32 
                 +E+D + L a +  L+++ +sL+ e+  L 
  KOO21755.1 125 IEQDVRNLTAEHARLHAEAESLQPEKSVLV 154
                 688999999999999999999999998876 PP

  == domain 2  score: 7.7 bits;  conditional E-value: 0.0031
        HALZ  19 sdydsLkkenekLkaelqeLkek 41 
                 +d++++++e+ +L+ael  L++ 
  KOO21755.1 224 ADVENMERERAALEAELSGLSAT 246
                 699*****************986 PP

  == domain 3  score: -2.0 bits;  conditional E-value: 3.2
        HALZ  29 ekLkaelqeLke 40 
                 e+L+ ++++L++
  KOO21755.1 266 ERLEEKVNKLNA 277
                 689999999986 PP

>> GAS  Growth-arrest specific micro-tubule binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.0   3.5    0.0012       1.6      53     121 ..     119     187 ..     111     189 .. 0.94
   2 !   18.1  13.7   9.5e-07    0.0013      37     136 ..     176     275 ..     172     279 .. 0.94
   3 !    8.9   5.4   0.00065       0.9      33     128 ..     385     478 ..     381     486 .. 0.91

  Alignments for each domain:
  == domain 1  score: 8.0 bits;  conditional E-value: 0.0012
         GAS  53 sqenkrlkepLkkaeeeveeLrkqlknyekdkqslknlkarlkelekelkdlkwehevleqrfekveke 121
                  ++n ++++ ++++++e ++L+++++  + +k+ l +++++  el   + + + +++ l++ ++k e+e
  KOO21755.1 119 DAKNASIEQDVRNLTAEHARLHAEAESLQPEKSVLVAAQTKQAELAADYAKHSGHAHKLQEAIDKYERE 187
                 67999************************************************************9998 PP

  == domain 2  score: 18.1 bits;  conditional E-value: 9.5e-07
         GAS  37 elkkkeernekelseisqenkrlkepLkkaeeeveeLrkqlknyekdkqslknlkarlkelekelkdlkwehevleqrfekvekerdelykkfeaaiqe 135
                 +l++  ++ e+els+++qe  r   +L++ + ev+ Lr++++ ++   ++ +n++++   le el+ l+  +e l  ++ +  +e ++  ++ e+++++
  KOO21755.1 176 KLQEAIDKYERELSDVQQETARHAATLQQTRTEVNVLREKVAAQDLTPADVENMERERAALEAELSGLSATKEALARQVREEAREEQRRLERLEEKVNK 274
                 67888899***********************************************************************99999999999999998876 PP

         GAS 136 v 136
                 +
  KOO21755.1 275 L 275
                 5 PP

  == domain 3  score: 8.9 bits;  conditional E-value: 0.00065
         GAS  33 eeieelkkkeernekelseisqenkrlkepLkkaeeeveeLrkqlknyekdkqslknlkarlkelekelkdlkwehevleqrfekvekerdelykk 128
                 e  +e+ k+++++e + + i++e  r  +++ + +++++  +k+l+++e + +  ++ k  ++++ + l  +  ++e +e +++ + +++de+ + 
  KOO21755.1 385 EHAAEMSKRKAETESLEERIAAERGRAGQTVDASKAQLAAAEKELADFEAEAS--RAKKLMVEQVGDALDMVMDHKEFVERQLAMLREHIDECDQA 478
                 5679*********************************************9665..66678999999999999999999******999999999875 PP

>> DUF3584  Protein of unknown function (DUF3584)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.5  15.1   0.00044       0.6     368     521 ..     123     270 ..      66     288 .. 0.54
   2 ?   10.0  14.4   7.9e-05      0.11     586     755 ..     315     476 ..     304     489 .. 0.72

  Alignments for each domain:
  == domain 1  score: 7.5 bits;  conditional E-value: 0.00044
     DUF3584 368 daltekhqdvqekydrrkqkikeeleeeleklkerleaireekdrlkaaieealealesqlrkqleaqkeelneeekelesrlselklrldsatateEe 466
                 + +++ ++++++++ r+++++++    e + l + + ++ e ++   a+++ + ++l+++     ++ ++el++ ++e +++++ l++ ++++ +  E+
  KOO21755.1 123 ASIEQDVRNLTAEHARLHAEAESLQP-EKSVLVAAQTKQAELAAD-YAKHSGHAHKLQEAI----DKYERELSDVQQETARHAATLQQTRTEVNVLREK 215
                 23333344444444444433332222.222222222222222222.333334444443333....3666666666666666666666667777777777 PP

     DUF3584 467 leqieeadealekaqeelekaeaevealqaee.eqlrkkrdeadealqkaerrleq 521
                 + ++    + +e++++e  + eae + l a + + +r+ r+ea e  ++ er le+
  KOO21755.1 216 VAAQDLTPADVENMERERAALEAELSGLSATKeALARQVREEAREEQRRLER-LEE 270
                 7777777777777777777777766666544303455566666555544443.222 PP

  == domain 2  score: 10.0 bits;  conditional E-value: 7.9e-05
     DUF3584 586 sLdleridvpdyaaseeeLrerlqaleealqsaeakqkqaeeelkqlnaeleeakravaeaatalknardtlerlqnekesekdklekaiaerkqqaee 684
                 s+d +++ +p+  +  +++ ++l+al+++l +aea q++ eee+++  ++le +k+ +++   + + a  +     +++++e + le+ ia+++  a +
  KOO21755.1 315 SIDPSAVVAPAVREARAAIGRELHALQDELIEAEALQARREEEAVTFVEQLEVLKATLEREGHQREIASAEHAAEMSKRKAETESLEERIAAERGRAGQ 413
                 566777778877777779999999999999999999999999999999999999999999888888888888888888889999999999999999999 PP

     DUF3584 685 qlqkldaqlkqleeqqkaaleelkedls...eerlekkakwqevvgeldeqlaelkkaieaartqakarlkele 755
                  ++  +aql + e++ +++++e  + ++   e+  +  + +++  +  + qla l ++i           +e++
  KOO21755.1 414 TVDASKAQLAAAEKELADFEAEASRAKKlmvEQVGDALDMVMDHKEFVERQLAMLREHI-----------DECD 476
                 99999999999999999988876554331113333333444444444444444444444...........4444 PP

>> AAA_31  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.9   0.4     0.067        92      38     116 ..     110     186 ..     106     191 .. 0.87
   2 ?   -2.1   0.0       2.2   3.1e+03      65     107 ..     203     250 ..     185     261 .. 0.51
   3 ?    6.6   0.0    0.0049       6.8      57     122 ..     388     455 ..     349     457 .. 0.78

  Alignments for each domain:
  == domain 1  score: 2.9 bits;  conditional E-value: 0.067
      AAA_31  38 lDpQanattglgiekneiektlyevlieeknikeaiiktkvenldlipssidLaeaeielvelekkeeilkellekvkd 116
                 lD Q  +t+ ++  + +ie+++ ++ +e+++++  + + + e+  l+ ++++ ae+  + ++ + + + l+e+++k + 
  KOO21755.1 110 LDEQMRLTFDAK--NASIEQDVRNLTAEHARLHAEAESLQPEKSVLVAAQTKQAELAADYAKHSGHAHKLQEAIDKYER 186
                 799999999665..78899******999999998888888899999999999999999999999999999999998775 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 2.2
      AAA_31  65 eeknikeaiiktkvenldlipssidL.....aeaeielvelekkeeil 107
                 ++++++  + ++kv   dl p++++      a++e el +l+ ++e+l
  KOO21755.1 203 QQTRTEVNVLREKVAAQDLTPADVENmererAALEAELSGLSATKEAL 250
                 444444444455566666666666530111133445555555555555 PP

  == domain 3  score: 6.6 bits;  conditional E-value: 0.0049
      AAA_31  57 ktlyevlieeknikeaiiktk.venldlipssidLaeaeielvelekkeeil.kellekvkdeYDyii 122
                  ++ +  +e+++++e i  ++     ++  s+ +La+ae+el+++e + ++  k ++e+v d  D+++
  KOO21755.1 388 AEMSKRKAETESLEERIAAERgRAGQTVDASKAQLAAAEKELADFEAEASRAkKLMVEQVGDALDMVM 455
                 44444456788888888877745555888999***************988883456699999999985 PP

>> Adhesin_P1_N  Adhesin P1 N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.7   7.3e-05       0.1      35      63 ..     155     186 ..     152     188 .. 0.83
   2 ?   -2.9   0.2       5.3   7.3e+03      25      43 ..     191     209 ..     189     210 .. 0.71
   3 ?   -2.2   0.1       3.2   4.4e+03       6      23 ..     232     249 ..     230     261 .. 0.85

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 7.3e-05
  Adhesin_P1_N  35 eadaKkaeIkaDYnkQ...akeikaatdeYke 63 
                   +a+ K+ae +aDY+k+   a ++++a+d+Y+ 
    KOO21755.1 155 AAQTKQAELAADYAKHsghAHKLQEAIDKYER 186
                   5899**********963336899999***986 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 5.3
  Adhesin_P1_N  25 vDkGtaktaeeadaKkaeI 43 
                   v + ta+ a+++++ ++e+
    KOO21755.1 191 VQQETARHAATLQQTRTEV 209
                   5555788888888888887 PP

  == domain 3  score: -2.2 bits;  conditional E-value: 3.2
  Adhesin_P1_N   6 DqAvkeAkeaGveVekda 23 
                   ++A+ eA+ +G++ +k+a
    KOO21755.1 232 ERAALEAELSGLSATKEA 249
                   578889999999988876 PP

>> ATG16  Autophagy protein 16 (ATG16)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.5  24.4   1.1e-05     0.015      29     178 ..     127     276 ..     114     280 .. 0.80
   2 ?    0.5  15.9      0.44     6e+02      71     181 ..     325     436 ..     290     438 .. 0.76
   3 ?    0.1   3.5       0.6   8.2e+02     123     163 ..     413     454 ..     395     474 .. 0.66

  Alignments for each domain:
  == domain 1  score: 15.5 bits;  conditional E-value: 1.1e-05
       ATG16  29 drtsaleaenaklekaaasaks.sksskksakekeasasqsnskqsakiqsleqklaqlreelaelyksrgelaqrllelneelqkleeklkede...e 123
                 + ++ l ae+a+l+++a+s ++ +++  + ++++++ a ++ +k s + ++l++++ +   el++++++ + +a  l+++ +e+ +l+ek  +++   +
  KOO21755.1 127 QDVRNLTAEHARLHAEAESLQPeKSVLVAAQTKQAELA-ADYAKHSGHAHKLQEAIDKYERELSDVQQETARHAATLQQTRTEVNVLREKVAAQDltpA 224
                 45677888888888888777775444444444444444.44889999*********************************************9983334 PP

       ATG16 124 rlaeleaeraaletklkdreeelrekeklvqdlqDElsaLqlqlnqaEeklrkle 178
                  ++++e+eraale +l+ +    + ke+l  ++++E    q +l+ +Eek +kl+
  KOO21755.1 225 DVENMERERAALEAELSGL---SATKEALARQVREEAREEQRRLERLEEKVNKLN 276
                 5777777888888876655...567999999**********************97 PP

  == domain 2  score: 0.5 bits;  conditional E-value: 0.44
       ATG16  71 kqsakiqsleqklaqlreelaelyksrgelaqrllelneelqkleeklkedeerlaeleaeraaletklkdreeelrekeklvq.dlqDElsaLqlqln 168
                 + ++  ++   +l++l++el e+   ++  ++  ++  e+l++l+++l+++  + + ++ae+aa   k+k  +e l+e+ ++        ++a + ql 
  KOO21755.1 325 AVREARAAIGRELHALQDELIEAEALQARREEEAVTFVEQLEVLKATLEREGHQREIASAEHAAEMSKRKAETESLEERIAAERgRAGQTVDASKAQLA 423
                 334445577899*************************************99999999999999999998888888888755544355567899999999 PP

       ATG16 169 qaEeklrklekEN 181
                  aE++l + e+E+
  KOO21755.1 424 AAEKELADFEAEA 436
                 9999999999996 PP

  == domain 3  score: 0.1 bits;  conditional E-value: 0.6
       ATG16 123 erlaeleaeraaletklkdreeel.rekeklvqdlqDElsaL 163
                 +++++ +a+ aa e++l+d e+e  r k+ +v+++ D+l+  
  KOO21755.1 413 QTVDASKAQLAAAEKELADFEAEAsRAKKLMVEQVGDALDMV 454
                 567778888888888888877654155555677777777655 PP

>> USP8_interact  USP8 interacting
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   2.1   9.3e-05      0.13       2      57 ..     177     232 ..     176     255 .. 0.88
   2 ?   -2.2   0.3       2.3   3.2e+03       9      42 ..     340     373 ..     333     402 .. 0.64
   3 ?    0.3   0.3      0.38   5.2e+02      19      54 ..     382     418 ..     368     443 .. 0.72

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 9.3e-05
  USP8_interact   2 Lrelvqkqqqkiaelkkevaeqkqqlseqkrelellkeyiralrstnpvlraladq 57 
                    L+e ++k +++++++++e+a++   l++ + e+++l+e ++a+  t   +++++ +
     KOO21755.1 177 LQEAIDKYERELSDVQQETARHAATLQQTRTEVNVLREKVAAQDLTPADVENMERE 232
                    8999****************************************999999988544 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 2.3
  USP8_interact   9 qqqkiaelkkevaeqkqqlseqkrelellkeyir 42 
                     q+++ e ++ +a+ +++  +  ++le+lk+++ 
     KOO21755.1 340 LQDELIEAEALQARREEEAVTFVEQLEVLKATLE 373
                    5666666666666777777777777777766554 PP

  == domain 3  score: 0.3 bits;  conditional E-value: 0.38
  USP8_interact  19 evaeqkqqlseqkrelellkeyiralrstn.pvlral 54 
                    ++ae+  ++s++k e e l+e i+a r    +++ a 
     KOO21755.1 382 ASAEHAAEMSKRKAETESLEERIAAERGRAgQTVDAS 418
                    4577888999999999999999999886552444444 PP

>> Filament  Intermediate filament protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.4   2.3      0.49   6.7e+02      58      83 ..     124     149 ..      99     187 .. 0.44
   2 ?   11.7  19.6    0.0001      0.14     171     280 ..     160     274 ..     120     278 .. 0.76
   3 ?    0.4   6.9      0.29     4e+02      45     118 ..     326     401 ..     314     408 .. 0.80
   4 ?    3.9   1.5     0.023        32      55     114 ..     414     474 ..     411     480 .. 0.79

  Alignments for each domain:
  == domain 1  score: -0.4 bits;  conditional E-value: 0.49
                 XXXXXXXXXXXXXXXXXXXXXXXXXX CS
    Filament  58 elrkqldeltkerarlqleldnlree 83 
                 ++ + + +lt+e+arl++e ++l+ e
  KOO21755.1 124 SIEQDVRNLTAEHARLHAEAESLQPE 149
                 22222222222333322222222222 PP

  == domain 2  score: 11.7 bits;  conditional E-value: 0.0001
                 XXXXXXXXXXXX..XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-HHHHHHHHHHHHHHH...HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
    Filament 171 lkeiraqyeela..eknreeaeewykskleelqeaaeknsealrsakeeitelrrqiqsle...ieleslkkqkasleaqlaeleerleaeleklqekl 264
                  +e+ a+y ++   +++ +ea + y++ l+++q++ +++ ++l+++++e++ lr ++ +     +++e+++ ++a+lea+l+ l ++ ea +++++e+ 
  KOO21755.1 160 QAELAADYAKHSghAHKLQEAIDKYERELSDVQQETARHAATLQQTRTEVNVLREKVAAQDltpADVENMERERAALEAELSGLSATKEALARQVREEA 258
                 467788887776224567888899******************************999655422479********************************* PP

                 HHHHHHHHHHHHHHHH CS
    Filament 265 seleeelaeireemar 280
                 +e ++ l+++ e++++
  KOO21755.1 259 REEQRRLERLEEKVNK 274
                 **99999999888765 PP

  == domain 3  score: 0.4 bits;  conditional E-value: 0.29
                 XX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX..XXXXXXXXXXXXXXXXXXX CS
    Filament  45 vsklkelyekeleelrkqldeltkerarlqleldnlreeledlrkkyekelnkre..evEaelkalrkdldeatla 118
                 v++ +++  +el+ l+++l e+++ +ar + e  +  e+le l++ +e+e ++re  ++E++ +  +++ + ++l+
  KOO21755.1 326 VREARAAIGRELHALQDELIEAEALQARREEEAVTFVEQLEVLKATLEREGHQREiaSAEHAAEMSKRKAETESLE 401
                 5566677778999999999999999999999999999999999999999988886336777777788887777764 PP

  == domain 4  score: 3.9 bits;  conditional E-value: 0.023
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
    Filament  55 eleelrkqldeltkerarlqleldnlre.eledlrkkyekelnkreevEaelkalrkdlde 114
                 +++  ++ql +++ke a  ++e +++++  +e++   ++  + ++e vE++l+ lr ++de
  KOO21755.1 414 TVDASKAQLAAAEKELADFEAEASRAKKlMVEQVGDALDMVMDHKEFVERQLAMLREHIDE 474
                 5666788888888888888888888765257888888888899999999999999988887 PP

>> Gp58  gp58-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.8   1.6      0.02        28     219     316 ..     119     214 ..      73     228 .. 0.67
   2 ?    8.6   0.1   0.00037      0.51     244     284 ..     233     273 ..     223     278 .. 0.89
   3 ?   -1.6   0.3      0.45   6.2e+02     166     230 ..     357     423 ..     333     452 .. 0.50

  Alignments for each domain:
  == domain 1  score: 2.8 bits;  conditional E-value: 0.02
        Gp58 219 sGtteayeskLddlraeftrsnqGmrveleskisGlqstqqstakqisqeiknregavsrvqqdldsyqrrlqdaeknyssLtqtvkGlqstvsdpns 316
                 +    + e+ + +l ae++r++      l+ + s l ++q   a+ +  +  + +g   ++q  +d y r l d +++ +    t++  +++v+   +
  KOO21755.1 119 DAKNASIEQDVRNLTAEHARLHA-EAESLQPEKSVLVAAQTKQAE-LAADYAKHSGHAHKLQEAIDKYERELSDVQQETARHAATLQQTRTEVNVLRE 214
                 44455566666666666666666.344555566666666555544.4555666677778888888888888888777777776666666666654444 PP

  == domain 2  score: 8.6 bits;  conditional E-value: 0.00037
        Gp58 244 rveleskisGlqstqqstakqisqeiknregavsrvqqdld 284
                 r  le+++sGl +t+++ a+q+  e ++ +  + r++ +++
  KOO21755.1 233 RAALEAELSGLSATKEALARQVREEAREEQRRLERLEEKVN 273
                 889**************************999999988776 PP

  == domain 3  score: -1.6 bits;  conditional E-value: 0.45
        Gp58 166 lsssyqagieGlkatlasdklglkaeiqasaq..gLsqkyddeirkLsakittt...ssGtteayeskLd 230
                    ++ + +e lkatl+ +    + ei ++ +  ++s k   e + L+ +i+     +  t++a +++L+
  KOO21755.1 357 EAVTFVEQLEVLKATLEREG--HQREIASAEHaaEMS-KRKAETESLEERIAAErgrAGQTVDASKAQLA 423
                 44567777777777776554..444554433200222.22333334433333210001113333333332 PP

>> APG6_N  Apg6 coiled-coil region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.1  11.0    0.0027       3.7      28     130 ..      97     206 ..      78     220 .. 0.50
   2 ?   11.8  19.1   0.00019      0.26      11     110 ..     181     280 ..     178     285 .. 0.84

  Alignments for each domain:
  == domain 1  score: 8.1 bits;  conditional E-value: 0.0027
      APG6_N  28 Yeeflkklkkekkeeek...........qdeeleeleeeleklekeeeelleeLkelekereel..........eaelaaleeelealeeeeerfwrey 105
                 Y+ fl+ +++ ++ +e+                   e+++++l +e ++l +e + l+ e++ l          +a+ a+ +  + +l+e  ++     
  KOO21755.1  97 YKLFLEGVDDMSPLDEQmrltfdaknasI-------EQDVRNLTAEHARLHAEAESLQPEKSVLvaaqtkqaelAADYAKHSGHAHKLQEAIDK----- 183
                 88888888888888888888855555552.......4444444444444444444444444433100000000033333333333333333333..... PP

      APG6_N 106 nelqlelleleeeldsleaqyehaq 130
                   +++el++ ++e +  +a +++++
  KOO21755.1 184 --YERELSDVQQETARHAATLQQTR 206
                 ..33333333333333333333332 PP

  == domain 2  score: 11.8 bits;  conditional E-value: 0.00019
      APG6_N  11 leeldkqleqaekerdaYeeflkklkkekkeeekqdeeleeleeeleklekeeeelleeLkelekereeleaelaaleeelealeeeeerfwreynelq 109
                 +++++++l+++++e     + l++ ++e +  +++    + +  ++e++e+e+++l++eL  l +++e+l++++++ ++e++++ e  e+++++ n+ +
  KOO21755.1 181 IDKYERELSDVQQETARHAATLQQTRTEVNVLREKVAAQDLTPADVENMERERAALEAELSGLSATKEALARQVREEAREEQRRLERLEEKVNKLNAGS 279
                 899999999999999999999999999965554333333444455***************************************999999999999866 PP

      APG6_N 110 l 110
                 +
  KOO21755.1 280 V 280
                 5 PP

>> WASH-7_C  WASH complex subunit 7, C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   1.5   0.00036      0.49     108     169 ..     177     242 ..     169     246 .. 0.86
   2 ?   -0.5   1.3      0.61   8.4e+02     129     171 ..     398     440 ..     350     475 .. 0.68

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.00036
    WASH-7_C 108 fesvkkkykkelekvkealaakekkkskkke.....dekllqtlkLtlkrleayqkEfelLeyslss 169
                  ++   ky++el++v++++a++ ++ +++++      ek+  +  Lt   +e++++E   Le+ ls+
  KOO21755.1 177 LQEAIDKYERELSDVQQETARHAATLQQTRTevnvlREKV-AAQDLTPADVENMERERAALEAELSG 242
                 5777889********9999999888777776788877776.899******************99986 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 0.61
    WASH-7_C 129 kekkkskkke........dekllqtlkLtlkrleayqkEfelLeyslssar 171
                 +        +          +  qt+  ++ +l a++kE   +e+  s a+
  KOO21755.1 398 E--------SleeriaaeRGRAGQTVDASKAQLAAAEKELADFEAEASRAK 440
                 2........122222322455567777777777777777777776666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (491 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2109  (0.117631); expected 358.6 (0.02)
Passed bias filter:                      626  (0.0349155); expected 358.6 (0.02)
Passed Vit filter:                        92  (0.00513135); expected 17.9 (0.001)
Passed Fwd filter:                        60  (0.00334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 1.23u 0.32s 00:00:01.55 Elapsed: 00:00:00.52
# Mc/sec: 2826.55
//
Query:       KOO21756.1  [L=797]
Description: potassium voltage-gated channel subfamily h member 6-like protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    4.4e-09   35.2   5.4     0.0008   18.8   0.3    2.9  3  EF-hand_1     EF hand
    7.1e-09   36.0   1.4    1.2e-08   35.3   0.3    2.0  2  EF-hand_7     EF-hand domain pair
    8.3e-09   35.2   1.8    9.3e-08   31.8   0.1    2.7  2  EF-hand_8     EF-hand domain pair
    1.4e-07   30.9   2.6    8.5e-05   22.2   0.2    3.1  2  EF-hand_6     EF-hand domain
    4.7e-06   25.9   3.3      0.053   13.0   0.4    2.9  3  EF-hand_5     EF hand
    9.2e-05   22.4   0.0       0.13   12.4   0.0    2.5  2  cNMP_binding  Cyclic nucleotide-binding domain
  ------ inclusion threshold ------
        1.7    9.3   5.3        1.3    9.6   0.1    2.7  3  Com_YlbF      Control of competence regulator ComK, YlbF/YmcA


Domain annotation for each model (and alignments):
>> EF-hand_1  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.0       3.6   9.2e+03      12      19 ..     265     272 ..     265     273 .. 0.88
   2 !   18.8   0.3   3.1e-07    0.0008       5      28 ..     600     623 ..     596     624 .. 0.88
   3 !   18.2   0.3   4.9e-07    0.0013       1      26 [.     632     657 ..     632     659 .. 0.93

  Alignments for each domain:
  == domain 1  score: -3.3 bits;  conditional E-value: 3.6
                 TSSSEEEH CS
   EF-hand_1  12 DgdGkIdf 19 
                 +++G++df
  KOO21756.1 265 NQSGRLDF 272
                 89*****9 PP

  == domain 2  score: 18.8 bits;  conditional E-value: 3.1e-07
                 HHHHHTTTSSSEEEHHHHHHHHHH CS
   EF-hand_1   5 iFrefDkDgdGkIdfeEfkellkk 28 
                  F+e+D D++G +df+E+++++++
  KOO21756.1 600 KFDEMDDDRSGAVDFKELRAAIRA 623
                 59*******************987 PP

  == domain 3  score: 18.2 bits;  conditional E-value: 4.9e-07
                 HHHHHHHHHTTTSSSEEEHHHHHHHH CS
   EF-hand_1   1 elkeiFrefDkDgdGkIdfeEfkell 26 
                 +lk++++ +D Dg+G I+f Ef+e++
  KOO21756.1 632 DLKKLIDGIDADGSGLIEFPEFMEMV 657
                 58999*******************97 PP

>> EF-hand_7  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.0         3   7.7e+03       6      20 ..     257     271 ..     254     274 .. 0.78
   2 !   35.3   0.3   4.7e-12   1.2e-08       3      70 ..     596     657 ..     594     658 .. 0.90

  Alignments for each domain:
  == domain 1  score: -2.6 bits;  conditional E-value: 3
   EF-hand_7   6 eaFkelDtdgdgyld 20 
                   F+    +++g+ld
  KOO21756.1 257 VHFRTARYNQSGRLD 271
                 568999999999998 PP

  == domain 2  score: 35.3 bits;  conditional E-value: 4.7e-12
   EF-hand_7   3 klkeaFkelDtdgdgyldkeellrllrkifqgagegsklsdeelellfkefDtdkdGvisfdEFlkly 70 
                 +lk +F+e+D d++g +d  el+ ++r        g  + ++ l++l++ +D d++G i f EF++++
  KOO21756.1 596 ELKLKFDEMDDDRSGAVDFKELRAAIR------ALGYQIKSTDLKKLIDGIDADGSGLIEFPEFMEMV 657
                 68889******************9999......6677777777*********************9986 PP

>> EF-hand_8  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.3   0.4   0.00019      0.49      32      48 ..     601     617 ..     596     620 .. 0.92
   2 !   31.8   0.1   3.6e-11   9.3e-08       3      54 ..     610     659 ..     609     660 .. 0.95

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.00019
   EF-hand_8  32 frefDtdgdGkisfeEF 48 
                 f+e+D d++G+++f+E 
  KOO21756.1 601 FDEMDDDRSGAVDFKEL 617
                 99*************97 PP

  == domain 2  score: 31.8 bits;  conditional E-value: 3.6e-11
   EF-hand_8   3 gkItreelrrilrilglkkglseeevdilfrefDtdgdGkisfeEFcvller 54 
                 g +++ elr ++r+lg++  +   ++  l++ +D dg+G i f EF++++ +
  KOO21756.1 610 GAVDFKELRAAIRALGYQ--IKSTDLKKLIDGIDADGSGLIEFPEFMEMVLK 659
                 889***************..*****************************976 PP

>> EF-hand_6  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.2   0.2   3.3e-08   8.5e-05       2      31 .]     597     625 ..     596     625 .. 0.92
   2 !    7.5   0.2    0.0017       4.4       2      25 ..     633     656 ..     632     664 .. 0.83

  Alignments for each domain:
  == domain 1  score: 22.2 bits;  conditional E-value: 3.3e-08
   EF-hand_6   2 lreaFklfDkdgdGkidaeElrkalrkalg 31 
                 l+ +F+++D d++G +d++Elr+a+r alg
  KOO21756.1 597 LKLKFDEMDDDRSGAVDFKELRAAIR-ALG 625
                 6778**********************.887 PP

  == domain 2  score: 7.5 bits;  conditional E-value: 0.0017
   EF-hand_6   2 lreaFklfDkdgdGkidaeElrka 25 
                 l+++ + +D dg+G i + E++ +
  KOO21756.1 633 LKKLIDGIDADGSGLIEFPEFMEM 656
                 56667789*************986 PP

>> EF-hand_5  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.0       1.1   2.8e+03      11      18 ..     265     272 ..     264     273 .. 0.86
   2 !   13.0   0.4   2.1e-05     0.053       5      23 ..     601     619 ..     597     621 .. 0.91
   3 !   12.3   0.1   3.6e-05     0.093       7      25 .]     639     657 ..     633     658 .. 0.84

  Alignments for each domain:
  == domain 1  score: -1.9 bits;  conditional E-value: 1.1
                 S-SSCE-H CS
   EF-hand_5  11 NgDGkIsk 18 
                 N++G++++
  KOO21756.1 265 NQSGRLDF 272
                 99****97 PP

  == domain 2  score: 13.0 bits;  conditional E-value: 2.1e-05
                 HHHH-SS-SSCE-HHHHHH CS
   EF-hand_5   5 FqaiDlNgDGkIskeELkt 23 
                 F+++D +++G +++ EL++
  KOO21756.1 601 FDEMDDDRSGAVDFKELRA 619
                 9****************86 PP

  == domain 3  score: 12.3 bits;  conditional E-value: 3.6e-05
                 HH-SS-SSCE-HHHHHHHH CS
   EF-hand_5   7 aiDlNgDGkIskeELktlv 25 
                  iD++g+G I + E++++v
  KOO21756.1 639 GIDADGSGLIEFPEFMEMV 657
                 59*************9975 PP

>> cNMP_binding  Cyclic nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.3   0.0    0.0019       4.9       7      32 ..     559     584 ..     556     597 .. 0.86
   2 !   12.4   0.0   4.9e-05      0.13      48      89 .]     683     724 ..     676     724 .. 0.93

  Alignments for each domain:
  == domain 1  score: 7.3 bits;  conditional E-value: 0.0019
                   T-EEE-TTSB-SEEEEEEES-EEEEE CS
  cNMP_binding   7 gevifrqGdpadslyivlsGevrvyr 32 
                    + +++ G  +++l+++++G+v + r
    KOO21756.1 559 SDLVIKMGSMGRGLFFIMRGTVNIKR 584
                   6899*******************943 PP

  == domain 2  score: 12.4 bits;  conditional E-value: 4.9e-05
                   TEEESHHHHHHTS--SSEEEESSTEEEEEEEHHHHHHHHHH- CS
  cNMP_binding  48 GdlfGelalltgeprtatvvAltdsellalprddflellqqd 89 
                     +fGe   l + p+t  v+A+t +  ++lp + ++++l+q+
    KOO21756.1 683 EGFFGEETTLSKCPSTLKVQAVTYCDFFVLPVAVLDSVLEQN 724
                   679*******99************************999986 PP

>> Com_YlbF  Control of competence regulator ComK, YlbF/YmcA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   0.1   0.00052       1.3      20      56 ..      52      94 ..      49     151 .. 0.74
   2 ?   -3.1   0.1       4.6   1.2e+04      56      74 ..     587     605 ..     580     628 .. 0.57
   3 ?    1.1   0.4      0.23   5.8e+02      27      73 ..     720     767 ..     716     776 .. 0.76

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 0.00052
                HHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHTT......- CS
    Com_YlbF 20 eykeaeealeedeelqklikefkklqkelqekqmkg......e 56
                +++ ae+ +++  +++++++++kk q+ +++k+ ++       
  KOO21756.1 52 RLQPAESLIKSSTDVKNMLTDMKKEQMVIVKKRDQKnegpgdG 94
                578899***********************99887775555442 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 4.6
                 ----HHHHHHHHHHHHHHH CS
    Com_YlbF  56 eelkeeekkelqelkeeld 74 
                 ++l+++++ el+   +e+d
  KOO21756.1 587 PKLTDAQQAELKLKFDEMD 605
                 4455555544444444443 PP

  == domain 3  score: 1.1 bits;  conditional E-value: 0.23
                 HHHCSHHHHHHHHHHHHHHH.HHHHHHHTT----HHHHHHHHHHHHHH CS
    Com_YlbF  27 aleedeelqklikefkklqk.elqekqmkgeelkeeekkelqelkeel 73 
                  le++++ ++l++++ +++  +l ++qm+ ++ + ++ + ++++++ l
  KOO21756.1 720 VLEQNKNMRTLVAQYAARNTsKLPAEQMSEQMSRPSDVEMMEAEHAAL 767
                 68999**********888886788888888777777775555555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (797 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       759  (0.0423336); expected 358.6 (0.02)
Passed bias filter:                      526  (0.0293379); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.68u 0.30s 00:00:00.98 Elapsed: 00:00:00.45
# Mc/sec: 5339.27
//
Query:       KOO21757.1  [L=439]
Description: hypothetical protein Ctob_007246 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.6e-38  133.1  22.7    2.1e-38  132.7  22.7    1.2  1  Nop53     Nop53 (60S ribosomal biogenesis)
  ------ inclusion threshold ------
       0.44    8.8  17.3       0.65    8.2  17.3    1.2  1  CDC45     CDC45-like protein


Domain annotation for each model (and alignments):
>> Nop53  Nop53 (60S ribosomal biogenesis)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  132.7  22.7   2.4e-42   2.1e-38      21     398 .]      32     386 ..       8     386 .. 0.71

  Alignments for each domain:
  == domain 1  score: 132.7 bits;  conditional E-value: 2.4e-42
       Nop53  21 LeevreeeritGgvlsekkdeeLFvvDtkgdee.......lkkka..rkkkkkpLksdeiLaqrsavpavsakrkrkkakkkkkkkvskkelarlrkla 110
                  e+v   er tGg +s   +e+LF +     ++       +   +     +   L ++  La +  +p v ++ ++    k++    skk l+   k+a
  KOO21757.1  32 REQVD-LERRTGGSVSGLTNEQLFELQPAVPQSkvvvghrT---KpvGDVSRTSLSVERKLAANPFIPTVVKPPSQ----KQRAGP-SKKTLEIRYKVA 121
                 56666.5777****************998555546654321...245666778999***********997644432....333332.444333333333 PP

       Nop53 111 krkkkg....ekkkeksakeakkksgsyDlWaeeeeeeeeekkktklstlekkkkvkrPktlkkkpislsalpavevphaGkSYNPsfedhqellqkav 205
                 +  k      +++ +  a +a ++++  D+W+  +++             ++ k+ +rP        + + + av +p++G+S NP+  +h+ell++av
  KOO21757.1 122 RAVKGLvqhrAQA-ALAAITAPPQQEALDVWGGGADDA----------G-SRAKRQRRPP------EASTVSVAVVMPAEGASWNPTASAHKELLDQAV 202
                 3333223321222.3445567788899****9854432..........1.2333334443......22455679************************* PP

       Nop53 206 eaEkkrekeeeklerkrekiaekaataeareeelseekde...........gleeeeeeeeeeeeeeeeeeeeseeeeklnapvkkkpkrKTkaqRnke 293
                   E++r+++e+  ++ + +    + ++e++ ++l++e +            g++e++e+++ee+     e+      e+      + +++ TkaqRn+ 
  KOO21757.1 203 GHELERLRREQLHRNSLFHHSDDESEDEETTARLAAEREAaksapllqdapGADEDDEDDAEEG-----EAA-----ERS--AWHVDKEKLTKAQRNRR 289
                 *********9999998887766666666666655555555888877654332222222221111.....111.....111..2234559********** PP

       Nop53 294 krrkeeekeekeekkekkkeaqlerlkeikkevaekekeraeaaearkkekrkkkaekkklkrrklgkhkvpepdlevqlsdELsdSLRtLKPeGNLlk 392
                 +r+ke+ekee++ ++e+k+e+ql r+ ++ +e++++ +e +++     +e++   a+  ++ ++kl   ++  ++ +v lsdE    LR++ +eG+Ll 
  KOO21757.1 290 ERAKEREKEERAAAAERKRERQLGRVGTLLSELKKESAELRAR-----QEHE---AAWAAALPKKLAGKRYVPKRPDVLLSDEQPSALRQMSTEGSLLA 380
                 *********************************9988887666.....3333...3456889****7778888999*********************** PP

       Nop53 393 DrfksL 398
                 Drf sL
  KOO21757.1 381 DRFDSL 386
                 ***998 PP

>> CDC45  CDC45-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.2  17.3   7.2e-05      0.65     108     214 ..     228     337 ..     209     349 .. 0.58

  Alignments for each domain:
  == domain 1  score: 8.2 bits;  conditional E-value: 7.2e-05
       CDC45 108 DDgdieeeleeereayealeeeeesdeedeeeeeeddddeeeeeeeeedeedeeedeeeskkkrksksdeeeesddddersrkrrrse......psakk 200
                 +D++  ++l++erea ++    +++     +e++edd +e+e  e++  + d+e+ + +++++r+++++e+e++++++  +rkr+r+        s+ k
  KOO21757.1 228 EDEETTARLAAEREAAKSAPLLQDAPGA--DEDDEDDAEEGEAAERSAWHVDKEKLT-KAQRNRRERAKEREKEERAAAAERKRERQLgrvgtlLSELK 323
                 5666788889999988887777776532..344455555555555544444444444.44444444444444455555555666655556665533334 PP

       CDC45 201 lrrqlkkerrkyea 214
                 +++ ++++r+++ea
  KOO21757.1 324 KESAELRARQEHEA 337
                 44446666666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (439 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1402  (0.0781973); expected 358.6 (0.02)
Passed bias filter:                      446  (0.0248759); expected 358.6 (0.02)
Passed Vit filter:                        48  (0.00267723); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.61u 0.30s 00:00:00.90 Elapsed: 00:00:00.45
# Mc/sec: 2961.94
//
Query:       KOO21758.1  [L=438]
Description: sphingosine kinase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.6e-28   97.4   0.4    6.9e-28   96.8   0.4    1.3  1  DAGK_cat  Diacylglycerol kinase catalytic domain


Domain annotation for each model (and alignments):
>> DAGK_cat  Diacylglycerol kinase catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   96.8   0.4   3.9e-32   6.9e-28       1     124 [.     116     246 ..     116     248 .. 0.90

  Alignments for each domain:
  == domain 1  score: 96.8 bits;  conditional E-value: 3.9e-32
                 EEEEEE-TTCTTTTHHHHH.HHCHHHHHHCTCEEEEEE--STTHHHHHHHHHHHCC-SEEEEEESHHHHHHHHHHHCT.HHCTTSEEEEEE-SS--HHH CS
    DAGK_cat   1 kllvivNpksGkgkgekll.rkvrelleeagvelelieteepgdakelakeakeegvdlivvaGGDGtvsevlnglle.elatkpplgiiPlGtgNdla 97 
                 k++vi+Np sG+++g+kl+ + v++ ++eagve+ +  t+++g++  la++a+ +gvd+++++GGDGt+sev+ng+++ e +  +++g++P+GtgN + 
  KOO21758.1 116 KVVVIYNPVSGGKRGQKLMdNVVNPAFKEAGVEVVALATQHSGHGVGLAETADLTGVDALCALGGDGTLSEVINGFMRrEPQPSCAIGFLPGGTGNTFM 214
                 689****************9999*******************************************************999999*************** PP

                 HHC....T--S.SHHHHHHCHHCTBEEEEEEE CS
    DAGK_cat  98 ral....gigk.dieealesiikgetrkvdvg 124
                  ++    + g+  + +a+  i+ g trkvd+ 
  KOO21758.1 215 HDVmgkkQRGEaAVRAAVAVIMGGLTRKVDLS 246
                 ***54432222355558888999999999986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (438 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       349  (0.0194657); expected 358.6 (0.02)
Passed bias filter:                      254  (0.014167); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.52u 0.25s 00:00:00.77 Elapsed: 00:00:00.43
# Mc/sec: 3066.69
//
Query:       KOO21759.1  [L=112]
Description: ankyrin repeat domain protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    7.5e-15   54.8   0.4    4.4e-08   33.3   0.1    2.2  2  Ank_5     Ankyrin repeats (many copies)
      5e-13   49.4   0.1    1.2e-12   48.2   0.1    1.6  1  Ank_2     Ankyrin repeats (3 copies)
    2.2e-12   46.8   0.9    1.3e-06   28.5   0.3    3.6  3  Ank       Ankyrin repeat
      5e-11   42.9   0.0    1.6e-09   38.1   0.0    2.1  2  Ank_4     Ankyrin repeats (many copies)
    8.8e-08   31.9   0.0      0.002   18.4   0.0    2.9  3  Ank_3     Ankyrin repeat


Domain annotation for each model (and alignments):
>> Ank_5  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.3   0.1   1.2e-11   4.4e-08      10      56 .]      37      83 ..      29      83 .. 0.88
   2 !   25.8   0.0   2.6e-09   9.2e-06       1      47 [.      62     107 ..      62     109 .. 0.92

  Alignments for each domain:
  == domain 1  score: 33.3 bits;  conditional E-value: 1.2e-11
       Ank_5 10 nrldgggntpLhvAakygaadvvrlLlargadlnltdsrGltaldlA 56
                 + + ++ tpLh+Aa +g++d v+ L+a ga+ ++ d++++t+l++A
  KOO21759.1 37 EAHNDKKATPLHLAAMHGYPDSVKALVAAGASVDALDDENSTPLHMA 83
                45567778*************************************98 PP

  == domain 2  score: 25.8 bits;  conditional E-value: 2.6e-09
       Ank_5   1 LlehgpadvnrldgggntpLhvAakygaadvvrlLlargadlnltds 47 
                 L+++g a+v++ld +  tpLh+A ++g+++ +++L+a +a+l ++++
  KOO21759.1  62 LVAAG-ASVDALDDENSTPLHMATEQGRSESIEVLVAARAALETRTD 107
                 78999.9*****************************99998887775 PP

>> Ank_2  Ankyrin repeats (3 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.2   0.1   3.4e-16   1.2e-12       9      77 ..      22     100 ..       2     107 .. 0.82

  Alignments for each domain:
  == domain 1  score: 48.2 bits;  conditional E-value: 3.4e-16
       Ank_2   9 nlelvklLl.egadpn..k.ngktaLhyAakngnleivklLleh......adndgrtpLhyAarsghleivklLlekga 77 
                 n e ++ L+ +ga ++  + ++ t+Lh+Aa++g+ + vk+L+++      +d+++ tpLh+A ++g++e +++L+   a
  KOO21759.1  22 NAESIEALVvAGAPLEahNdKKATPLHLAAMHGYPDSVKALVAAgasvdaLDDENSTPLHMATEQGRSESIEVLVAARA 100
                 3468899988776655532488********************96778666669999******************95544 PP

>> Ank  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.2   0.0     0.009        32      14      32 .]      22      41 ..       1      41 [. 0.86
   2 !   28.5   0.3   3.7e-10   1.3e-06       4      32 .]      45      74 ..      44      74 .. 0.96
   3 !    9.6   0.0   0.00036       1.3       4      25 ..      78     100 ..      76     107 .. 0.80

  Alignments for each domain:
  == domain 1  score: 5.2 bits;  conditional E-value: 0.009
                THHHHHHHH.TTTSTTCBTT CS
         Ank 14 kkriiklLL.hGAnlnaldn 32
                +++ i++L+  GA l a+++
  KOO21759.1 22 NAESIEALVvAGAPLEAHND 41
                57899***999**9999995 PP

  == domain 2  score: 28.5 bits;  conditional E-value: 3.7e-10
                BHHHHHHHHTTHHHHHHHH.TTTSTTCBTT CS
         Ank  4 TPLHlAatngkkriiklLL.hGAnlnaldn 32
                TPLHlAa+ g ++ +k+L+  GA+++ald+
  KOO21759.1 45 TPLHLAAMHGYPDSVKALVaAGASVDALDD 74
                9******************88******996 PP

  == domain 3  score: 9.6 bits;  conditional E-value: 0.00036
                 BHHHHHHHHTTHHHHHHHH.TTT CS
         Ank   4 TPLHlAatngkkriiklLL.hGA 25 
                 TPLH+A   g  + i+ L+  +A
  KOO21759.1  78 TPLHMATEQGRSESIEVLVaARA 100
                 9****998888999999996565 PP

>> Ank_4  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.9   0.0     0.049   1.7e+02      10      26 ..       1      17 [.       1      33 [. 0.74
   2 !   38.1   0.0   4.4e-13   1.6e-09       3      55 .]      45      96 ..      43      96 .. 0.96

  Alignments for each domain:
  == domain 1  score: 2.9 bits;  conditional E-value: 0.049
       Ank_4 10 isgrlelvrlLlekgad 26
                ++g++e+++ L+e g  
  KOO21759.1  1 MHGQTESIKALVEAGTP 17
                5899********99854 PP

  == domain 2  score: 38.1 bits;  conditional E-value: 4.4e-13
       Ank_4  3 taLhyaaisgrlelvrlLlekgadinaqdnrsGetalhiAakrgnveilklLl 55
                t+Lh aa++g  ++v+ L++ ga+++a  +++  t+lh+A   g+ e ++ L+
  KOO21759.1 45 TPLHLAAMHGYPDSVKALVAAGASVDAL-DDENSTPLHMATEQGRSESIEVLV 96
                89*************************9.999**************9999985 PP

>> Ank_3  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.0       1.5   5.3e+03      12      26 ..       2      15 ..       1      17 [. 0.69
   2 !   18.4   0.0   5.7e-07     0.002       3      30 ..      44      70 ..      42      71 .. 0.92
   3 !   10.2   0.0   0.00026      0.94       2      23 ..      76      97 ..      75     104 .. 0.85

  Alignments for each domain:
  == domain 1  score: -1.3 bits;  conditional E-value: 1.5
       Ank_3 12 sgnleivkfLlenkg 26
                +g +e +k+L+e  g
  KOO21759.1  2 HGQTESIKALVE-AG 15
                566666999998.44 PP

  == domain 2  score: 18.4 bits;  conditional E-value: 5.7e-07
       Ank_3  3 etpLhlAarsgnleivkfLlenkgadvn 30
                 tpLhlAa++g ++ vk+L+   ga v+
  KOO21759.1 44 ATPLHLAAMHGYPDSVKALVA-AGASVD 70
                69***********99******.899997 PP

  == domain 3  score: 10.2 bits;  conditional E-value: 0.00026
       Ank_3  2 GetpLhlAarsgnleivkfLle 23
                + tpLh+A ++g+ e ++ L+ 
  KOO21759.1 76 NSTPLHMATEQGRSESIEVLVA 97
                67************98999987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (112 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       319  (0.0177924); expected 358.6 (0.02)
Passed bias filter:                      232  (0.0129399); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.39u 0.25s 00:00:00.64 Elapsed: 00:00:00.42
# Mc/sec: 810.08
//
Query:       KOO21760.1  [L=477]
Description: psbb mRNA maturation factor mbb1 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.3e-18   66.1  60.9    3.3e-06   27.5   0.3   11.3 11  TPR_14       Tetratricopeptide repeat
    1.5e-18   65.4  39.6     0.0013   18.7   0.6   10.8 12  TPR_2        Tetratricopeptide repeat
    1.6e-15   55.9   3.0      0.017   15.3   0.0    7.7  8  TPR_8        Tetratricopeptide repeat
    6.9e-15   55.4  51.0    6.7e-07   29.9   0.7    8.3  8  TPR_16       Tetratricopeptide repeat
    3.5e-14   52.9  40.3    4.7e-07   30.0   0.6    7.7  7  TPR_12       Tetratricopeptide repeat
    6.4e-12   45.0   9.9      0.035   14.5   0.0    7.3  7  TPR_17       Tetratricopeptide repeat
    7.1e-12   44.6   9.4      0.018   14.8   0.0    6.7  6  TPR_1        Tetratricopeptide repeat
    1.3e-09   38.4  34.1     0.0089   16.5   0.2    7.5  8  TPR_19       Tetratricopeptide repeat
    1.4e-06   27.8  10.7    1.4e-06   27.8  10.7    3.4  3  TPR_15       Tetratricopeptide repeat
    1.7e-06   27.7  19.7      0.051   13.6   0.1    7.1  8  TPR_7        Tetratricopeptide repeat
    7.9e-05   22.3  11.1        0.7    9.6   0.0    6.7  7  TPR_11       TPR repeat
     0.0018   18.4  30.8        1.4    9.1   0.1    6.5  6  TPR_9        Tetratricopeptide repeat
      0.004   16.4   3.1       0.11   11.7   0.1    2.9  2  FAT          FAT domain
     0.0093   16.0   0.0      0.099   12.6   0.0    2.5  2  Suf          Suppressor of forked protein (Suf)
  ------ inclusion threshold ------
      0.069   13.4   0.1      0.069   13.4   0.1    4.1  4  ANAPC3       Anaphase-promoting complex, cyclosome, subunit 3
      0.078   13.1   1.9        4.1    7.6   0.0    3.9  4  Fis1_TPR_C   Fis1 C-terminal tetratricopeptide repeat
       0.12   11.3   0.3        8.7    5.2   0.0    2.2  2  ChAPs        ChAPs (Chs5p-Arf1p-binding proteins)
       0.15   12.4   4.4         30    5.0   0.0    4.0  3  TPR_20       Tetratricopeptide repeat
        0.2   12.3  24.7         75    4.3   0.1    9.3  9  TPR_6        Tetratricopeptide repeat
       0.22   11.2  10.2        0.1   12.2   0.3    4.0  4  HrpB1_HrpK   Bacterial type III secretion protein (HrpB1_HrpK
        2.5    8.1   6.1         99    2.9   0.3    5.1  4  Mad3_BUB1_I  Mad3/BUB1 homology region 1
        3.8    7.4   7.8        3.6    7.5   0.1    3.9  4  Wzy_C_2      Virulence factor membrane-bound polymerase, C-te


Domain annotation for each model (and alignments):
>> TPR_14  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.5   0.3     4e-09   3.3e-06       3      44 .]      24      65 ..      22      65 .. 0.96
   2 !    8.8   0.5     0.004       3.3       4      35 ..      59      90 ..      58      99 .. 0.87
   3 !   12.5   0.5   0.00026      0.22       7      41 ..      96     129 ..      90     132 .. 0.82
   4 ?    4.1   0.2      0.13     1e+02       6      28 ..     128     150 ..     123     157 .. 0.86
   5 !   20.3   0.1     8e-07   0.00065       1      44 []     159     202 ..     159     202 .. 0.95
   6 !   11.9   0.5    0.0004      0.32       3      29 ..     195     220 ..     193     227 .. 0.88
   7 !   15.2   3.1   3.5e-05     0.028       2      44 .]     233     275 ..     232     275 .. 0.95
   8 ?    6.2   1.8     0.028        23       3      29 ..     303     329 ..     301     343 .. 0.80
   9 ?    7.5   2.0      0.01       8.2       4      30 ..     346     372 ..     343     388 .. 0.84
  10 ?    1.0   0.3       1.2     1e+03       3      27 ..     413     437 ..     411     452 .. 0.76
  11 ?   -1.0   0.0       5.7   4.6e+03       6      27 ..     449     470 ..     440     472 .. 0.78

  Alignments for each domain:
  == domain 1  score: 27.5 bits;  conditional E-value: 4e-09
      TPR_14  3 allalaeallalGdpdeAiallrralalaPddaeawlllaql 44
                ++++la ++++++d++  ++ lrra++++P++a ++ +la+l
  KOO21760.1 24 VWMKLANVYRNQRDYKMGERTLRRAIDACPTNALLRQALADL 65
                79**************************************86 PP

  == domain 2  score: 8.8 bits;  conditional E-value: 0.004
      TPR_14  4 llalaeallalGdpdeAiallrralalaPdda 35
                ++ala+++++++++ eA+ ++r+a +l P+  
  KOO21760.1 59 RQALADLCRESRRYPEARSHYREAMKLEPALS 90
                789*********************99999755 PP

  == domain 3  score: 12.5 bits;  conditional E-value: 0.00026
      TPR_14   7 laeallalGdpdeAiallrralalaPddaeawlll 41 
                  ++ +++lG  ++A+al++r l++aP+ a++  +l
  KOO21760.1  96 WGRMEAQLGHSAAAAALYERGLKHAPN-ARLCHAL 129
                 688899********************9.5555555 PP

  == domain 4  score: 4.1 bits;  conditional E-value: 0.13
      TPR_14   6 alaeallalGdpdeAiallrral 28 
                 al+ +l ++G  ++A+ +l+r l
  KOO21760.1 128 ALGVLLDRQGAAEKARSVLKRGL 150
                 7889999**************98 PP

  == domain 5  score: 20.3 bits;  conditional E-value: 8e-07
      TPR_14   1 peallalaeallalGdpdeAiallrralalaPddaeawlllaql 44 
                 p++l ala +  ++Gd   A++ll ++l+++P +  a+l l+ql
  KOO21760.1 159 PQLLHALAMVDVRAGDMGSARKLLSAVLEHHPRFTLAYLSLGQL 202
                 67899************************************997 PP

  == domain 6  score: 11.9 bits;  conditional E-value: 0.0004
      TPR_14   3 allalaeallalGdpdeAiallrrala 29 
                 a+l l++++++lG++++A++++++  a
  KOO21760.1 195 AYLSLGQLEERLGNLQAARRHYEAG-A 220
                 7999*******************97.4 PP

  == domain 7  score: 15.2 bits;  conditional E-value: 3.5e-05
      TPR_14   2 eallalaeallalGdpdeAiallrralalaPddaeawlllaql 44 
                 ++++  a+++ +l++p+ A+a ++ra +l+ dda+++  +a+l
  KOO21760.1 233 QLWQSWARIEQRLERPALALATYKRATQLYKDDAQLLVGWAKL 275
                 68999********************************999986 PP

  == domain 8  score: 6.2 bits;  conditional E-value: 0.028
      TPR_14   3 allalaeallalGdpdeAiallrrala 29 
                 a++++a+++ + G+ ++A+al+ +  a
  KOO21760.1 303 AYQCAAALEVRCGEVQAARALYAAGAA 329
                 789999999*************99755 PP

  == domain 9  score: 7.5 bits;  conditional E-value: 0.01
      TPR_14   4 llalaeallalGdpdeAiallrralal 30 
                 l a a ++++ G+ +eA++l+++a a+
  KOO21760.1 346 LHAWAVLEWRHGERREARRLFDEAEAA 372
                 6788999*****************775 PP

  == domain 10  score: 1.0 bits;  conditional E-value: 1.2
      TPR_14   3 allalaeallalGdpdeAiallrra 27 
                 a+ + ae++++ G+ ++A al r a
  KOO21760.1 413 AWSMWAELEAEHGNEERATALSRHA 437
                 8999999999999999998876555 PP

  == domain 11  score: -1.0 bits;  conditional E-value: 5.7
      TPR_14   6 alaeallalGdpdeAiallrra 27 
                 al+   +++G p  A++++++a
  KOO21760.1 449 ALGGGARTRGSPLSAADMYQWA 470
                 5566668899999999999987 PP

>> TPR_2  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.0       9.5   7.7e+03      18      34 .]       5      21 ..       5      21 .. 0.87
   2 !   16.1   0.0   1.1e-05    0.0087       2      34 .]      23      55 ..      22      55 .. 0.96
   3 !   18.7   0.6   1.6e-06    0.0013       6      32 ..      61      87 ..      56      89 .. 0.91
   4 !   11.2   0.4   0.00038      0.31       4      33 ..      93     122 ..      90     123 .. 0.90
   5 ?    6.4   0.1     0.014        11       1      28 [.     123     150 ..     123     152 .. 0.91
   6 ?    6.4   0.0     0.013        11       2      33 ..     160     191 ..     159     192 .. 0.93
   7 !   11.5   0.7   0.00032      0.26       3      26 ..     195     218 ..     193     220 .. 0.92
   8 !    9.6   0.1    0.0013       1.1       3      34 .]     234     265 ..     232     265 .. 0.92
   9 ?   -2.1   1.7         7   5.7e+03       2      25 ..     302     325 ..     301     329 .. 0.78
  10 !    6.8   0.1    0.0099         8       4      27 ..     346     369 ..     344     374 .. 0.91
  11 ?   -0.3   0.0       1.9   1.6e+03      20      32 ..     396     408 ..     394     410 .. 0.87
  12 ?   -1.3   0.0         4   3.2e+03       3      20 ..     413     430 ..     411     433 .. 0.87

  Alignments for each domain:
  == domain 1  score: -2.5 bits;  conditional E-value: 9.5
       TPR_2 18 eeAleafekAleldPnn 34
                +eA+ ++++   l P+n
  KOO21760.1  5 KEAAVLLQRLTLLTPEN 21
                58999999999999987 PP

  == domain 2  score: 16.1 bits;  conditional E-value: 1.1e-05
       TPR_2  2 ealynlGlayyklgdyeeAleafekAleldPnn 34
                ++++ l+++y+++ dy+  ++ +++A+  +P+n
  KOO21760.1 23 KVWMKLANVYRNQRDYKMGERTLRRAIDACPTN 55
                68*****************************97 PP

  == domain 3  score: 18.7 bits;  conditional E-value: 1.6e-06
       TPR_2  6 nlGlayyklgdyeeAleafekAleldP 32
                +l+++++++ +y eA+ ++++A +l+P
  KOO21760.1 61 ALADLCRESRRYPEARSHYREAMKLEP 87
                79************************9 PP

  == domain 4  score: 11.2 bits;  conditional E-value: 0.00038
       TPR_2   4 lynlGlayyklgdyeeAleafekAleldPn 33 
                 +  +G+  ++lg+ + A++++e+ l+++Pn
  KOO21760.1  93 YDSWGRMEAQLGHSAAAAALYERGLKHAPN 122
                 666899999********************9 PP

  == domain 5  score: 6.4 bits;  conditional E-value: 0.014
       TPR_2   1 aealynlGlayyklgdyeeAleafekAl 28 
                 a+++++lG ++ ++g  e+A+  +++ l
  KOO21760.1 123 ARLCHALGVLLDRQGAAEKARSVLKRGL 150
                 6789*****************9998865 PP

  == domain 6  score: 6.4 bits;  conditional E-value: 0.013
       TPR_2   2 ealynlGlayyklgdyeeAleafekAleldPn 33 
                 ++l++l+++  ++gd   A++++ ++le+ P+
  KOO21760.1 160 QLLHALAMVDVRAGDMGSARKLLSAVLEHHPR 191
                 6899************************9996 PP

  == domain 7  score: 11.5 bits;  conditional E-value: 0.00032
       TPR_2   3 alynlGlayyklgdyeeAleafek 26 
                 a+  lG++ ++lg+++ A++++e+
  KOO21760.1 195 AYLSLGQLEERLGNLQAARRHYEA 218
                 7899******************96 PP

  == domain 8  score: 9.6 bits;  conditional E-value: 0.0013
       TPR_2   3 alynlGlayyklgdyeeAleafekAleldPnn 34 
                 ++  ++++  +l +++ Al+ +++A +l+ ++
  KOO21760.1 234 LWQSWARIEQRLERPALALATYKRATQLYKDD 265
                 688899**********************9886 PP

  == domain 9  score: -2.1 bits;  conditional E-value: 7
       TPR_2   2 ealynlGlayyklgdyeeAleafe 25 
                 +a+ + + +  + g+ + A++++ 
  KOO21760.1 302 YAYQCAAALEVRCGEVQAARALYA 325
                 677778888888899999999885 PP

  == domain 10  score: 6.8 bits;  conditional E-value: 0.0099
       TPR_2   4 lynlGlayyklgdyeeAleafekA 27 
                 l++++ + ++ g+  eA+++f++A
  KOO21760.1 346 LHAWAVLEWRHGERREARRLFDEA 369
                 7899999****************9 PP

  == domain 11  score: -0.3 bits;  conditional E-value: 1.9
       TPR_2  20 AleafekAleldP 32 
                 A++++ +A+  +P
  KOO21760.1 396 ARHYYGRAVNAAP 408
                 999*****98887 PP

  == domain 12  score: -1.3 bits;  conditional E-value: 4
       TPR_2   3 alynlGlayyklgdyeeA 20 
                 a+ +++++ ++ g+ e+A
  KOO21760.1 413 AWSMWAELEAEHGNEERA 430
                 8999**********9998 PP

>> TPR_8  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.0   2.1e-05     0.017       2      34 .]      23      55 ..      22      55 .. 0.94
   2 !    8.5   0.0    0.0031       2.6       6      33 ..      61      88 ..      58      89 .. 0.93
   3 ?    0.0   0.0       1.6   1.3e+03       7      19 ..      89     101 ..      88     102 .. 0.89
   4 ?    2.1   0.0      0.36   2.9e+02      12      32 ..     101     121 ..      97     122 .. 0.84
   5 !    9.0   0.0    0.0021       1.7       1      30 [.     123     152 ..     123     156 .. 0.91
   6 ?   -1.2   0.0         4   3.3e+03       2      28 ..     160     186 ..     159     187 .. 0.80
   7 !    7.4   0.2    0.0072       5.8       3      25 ..     195     217 ..     194     219 .. 0.93
   8 ?    5.0   0.0     0.043        35       3      34 .]     234     265 ..     232     265 .. 0.85

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 2.1e-05
                CHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH. CS
       TPR_8  2 eayynlgsiylklgdyeeAkeyyekaleldpdn 34
                +++++l+++y+++ dy++ + ++++a+++ p+n
  KOO21760.1 23 KVWMKLANVYRNQRDYKMGERTLRRAIDACPTN 55
                69**************************99975 PP

  == domain 2  score: 8.5 bits;  conditional E-value: 0.0031
                HHHHHHHHTT-HHHHHHHHHHHHHHHHH CS
       TPR_8  6 nlgsiylklgdyeeAkeyyekaleldpd 33
                 l++++++  +y eA + y++a +l+p+
  KOO21760.1 61 ALADLCRESRRYPEARSHYREAMKLEPA 88
                799***********************96 PP

  == domain 3  score: 0.0 bits;  conditional E-value: 1.6
                 HHHHHHHTT-HHH CS
       TPR_8   7 lgsiylklgdyee 19 
                 l+s+y++ g++e+
  KOO21760.1  89 LSSVYDSWGRMEA 101
                 899*******996 PP

  == domain 4  score: 2.1 bits;  conditional E-value: 0.36
                 HHTT-HHHHHHHHHHHHHHHH CS
       TPR_8  12 lklgdyeeAkeyyekaleldp 32 
                  +lg   +A + ye+ l+ +p
  KOO21760.1 101 AQLGHSAAAAALYERGLKHAP 121
                 589************998665 PP

  == domain 5  score: 9.0 bits;  conditional E-value: 0.0021
                 CCHHHHHHHHHHHTT-HHHHHHHHHHHHHH CS
       TPR_8   1 aeayynlgsiylklgdyeeAkeyyekalel 30 
                 a++++ lg +++ +g  e+A +++++ l l
  KOO21760.1 123 ARLCHALGVLLDRQGAAEKARSVLKRGLGL 152
                 799**********************99987 PP

  == domain 6  score: -1.2 bits;  conditional E-value: 4
                 CHHHHHHHHHHHTT-HHHHHHHHHHHH CS
       TPR_8   2 eayynlgsiylklgdyeeAkeyyekal 28 
                 ++++ l+++    gd+ +A + +  +l
  KOO21760.1 160 QLLHALAMVDVRAGDMGSARKLLSAVL 186
                 56788999999999**99999887666 PP

  == domain 7  score: 7.4 bits;  conditional E-value: 0.0072
                 HHHHHHHHHHHTT-HHHHHHHHH CS
       TPR_8   3 ayynlgsiylklgdyeeAkeyye 25 
                 ay+ lg++ + lg++++A   ye
  KOO21760.1 195 AYLSLGQLEERLGNLQAARRHYE 217
                 799***************99998 PP

  == domain 8  score: 5.0 bits;  conditional E-value: 0.043
                 HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH. CS
       TPR_8   3 ayynlgsiylklgdyeeAkeyyekaleldpdn 34 
                 +++  ++i + l++   A ++y++a++l +d+
  KOO21760.1 234 LWQSWARIEQRLERPALALATYKRATQLYKDD 265
                 56666888999****************99875 PP

>> TPR_16  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.0   2.6e-05     0.022      16      67 ..       7      55 ..       5      56 .. 0.93
   2 !   16.4   4.4   1.3e-05     0.011       3      67 ..      62     123 ..      61     124 .. 0.94
   3 !   11.3   4.7   0.00051      0.42       7      61 ..     100     150 ..      95     156 .. 0.87
   4 !   29.9   0.7   8.2e-10   6.7e-07       2      60 ..     164     219 ..     163     227 .. 0.90
   5 !   11.2   2.8   0.00057      0.46       3      66 ..     238     302 ..     237     304 .. 0.80
   6 ?    2.4   4.4      0.32   2.6e+02       4      61 ..     273     328 ..     272     337 .. 0.82
   7 ?    5.2   0.2      0.04        33       3      26 ..     349     372 ..     347     378 .. 0.76
   8 ?    1.3   1.2      0.67   5.5e+02      16      53 ..     396     430 ..     382     439 .. 0.85

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 2.6e-05
      TPR_16 16 AaaaleaalkrdpssPdaaeAllllgdaalrqgrlaeAaalyraalraapda 67
                Aa +l++++ +    P++   ++ l++++  q +++  +  +r+a++a p +
  KOO21760.1  7 AAVLLQRLTLLT---PENGKVWMKLANVYRNQRDYKMGERTLRRAIDACPTN 55
                677899******...**********************************987 PP

  == domain 2  score: 16.4 bits;  conditional E-value: 1.3e-05
      TPR_16   3 laraalragdyddAaaaleaalkrdpssPdaaeAllllgdaalrqgrlaeAaalyraalraapda 67 
                 la++ +++++y++A+  +++a k+    P+    +   g++ +++g  a+Aaaly++ l++ap+a
  KOO21760.1  62 LADLCRESRRYPEARSHYREAMKLE---PALSSVYDSWGRMEAQLGHSAAAAALYERGLKHAPNA 123
                 77777899*****************...*999999999*************************86 PP

  == domain 3  score: 11.3 bits;  conditional E-value: 0.00051
      TPR_16   7 alragdyddAaaaleaalkrdpssPdaaeAllllgdaalrqgrlaeAaalyraal 61 
                  +++g+ ++Aaa++e+ lk +   P +a+   +lg+++ rqg  ++A+ ++++ l
  KOO21760.1 100 EAQLGHSAAAAALYERGLKHA---P-NARLCHALGVLLDRQGAAEKARSVLKRGL 150
                 5799*****************...9.7888889***************9998855 PP

  == domain 4  score: 29.9 bits;  conditional E-value: 8.2e-10
      TPR_16   2 alaraalragdyddAaaaleaalkrdpssPdaaeAllllgdaalrqgrlaeAaalyraa 60 
                 ala+  +ragd   A+++l a+l+ +   P+   A+l lg++  r+g+l++A+  y+a 
  KOO21760.1 164 ALAMVDVRAGDMGSARKLLSAVLEHH---PRFTLAYLSLGQLEERLGNLQAARRHYEAG 219
                 789999********************...************************888773 PP

  == domain 5  score: 11.2 bits;  conditional E-value: 0.00057
      TPR_16   3 laraalragdyddAaaaleaalkrdpssPdaaeAllllgdaalrq..grlaeAaalyraal....raapd 66 
                 +ar+  r+ +++ A+a +++a+ ++    d  +A+ll g+a l+   g++   +al+++a+    +++p+
  KOO21760.1 238 WARIEQRLERPALALATYKRATQLY---KD--DAQLLVGWAKLEGehGDVGTSRALFARAVssvaKHSPY 302
                 69999********************...66..566666666554444************99776666665 PP

  == domain 6  score: 2.4 bits;  conditional E-value: 0.32
      TPR_16   4 araalragdyddAaaaleaalkrdpssPdaaeAllllgdaalrq.grlaeAaalyraal 61 
                 a++  ++gd    +a++ +a+ +      +   ++  + a+ ++ g++++A+aly+a +
  KOO21760.1 273 AKLEGEHGDVGTSRALFARAVSSV---AKHSPYAYQCAAALEVRcGEVQAARALYAAGA 328
                 666778899999999999999999...888889999999999889*******9998844 PP

  == domain 7  score: 5.2 bits;  conditional E-value: 0.04
      TPR_16   3 laraalragdyddAaaaleaalkr 26 
                 +a + +r+g+ ++A++++++a ++
  KOO21760.1 349 WAVLEWRHGERREARRLFDEAEAA 372
                 667788889999999999887665 PP

  == domain 8  score: 1.3 bits;  conditional E-value: 0.67
      TPR_16  16 AaaaleaalkrdpssPdaaeAllllgdaalrqgrlaeA 53 
                 A++++ +a+ ++   P +  A+   +++ +++g+ ++A
  KOO21760.1 396 ARHYYGRAVNAA---PMDSSAWSMWAELEAEHGNEERA 430
                 899999999999...99999999999999999888877 PP

>> TPR_12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.0   0.6   5.7e-10   4.7e-07       5      73 ..      24      84 ..      21      86 .. 0.94
   2 !    7.9   0.4    0.0046       3.7      43      76 ..      88     121 ..      86     122 .. 0.87
   3 !    9.1   1.8    0.0019       1.5      28      72 ..     108     150 ..     105     153 .. 0.86
   4 !   13.3   2.3   9.1e-05     0.074       5      69 ..     161     217 ..     158     219 .. 0.88
   5 !   18.0   4.1   3.3e-06    0.0027       5      76 ..     195     263 ..     191     264 .. 0.91
   6 !    7.2   1.7    0.0073       5.9      10      74 ..     308     372 ..     301     375 .. 0.88
   7 ?   -1.2   0.2       3.1   2.5e+03      40      53 ..     442     452 ..     411     470 .. 0.50

  Alignments for each domain:
  == domain 1  score: 30.0 bits;  conditional E-value: 5.7e-10
      TPR_12  5 alnnlaavlrrlgrydeAlellekaleiarrllGpdhpltattlrnLgrlyralgryeeAlelleeala 73
                ++ +la+v+r + +y   ++ l++a++++     p++   a  +++L++l+r++ ry eA+++++ea++
  KOO21760.1 24 VWMKLANVYRNQRDYKMGERTLRRAIDAC-----PTN---ALLRQALADLCRESRRYPEARSHYREAMK 84
                5779*************************.....987...889************************97 PP

  == domain 2  score: 7.9 bits;  conditional E-value: 0.0046
      TPR_12  43 ltattlrnLgrlyralgryeeAlelleealaiae 76 
                 ++++++   gr+  +lg+ ++A +l+e+ l+ a+
  KOO21760.1  88 ALSSVYDSWGRMEAQLGHSAAAAALYERGLKHAP 121
                 6677888889*******************99875 PP

  == domain 3  score: 9.1 bits;  conditional E-value: 0.0019
      TPR_12  28 kaleiarrllGpdhpltattlrnLgrlyralgryeeAlelleeal 72 
                 +a ++++   G +h+  a+  ++Lg l++++g  e+A++ l++ l
  KOO21760.1 108 AAAALYE--RGLKHAPNARLCHALGVLLDRQGAAEKARSVLKRGL 150
                 5666664..67999999************************9977 PP

  == domain 4  score: 13.3 bits;  conditional E-value: 9.1e-05
      TPR_12   5 alnnlaavlrrlgrydeAlellekaleiarrllGpdhpltattlrnLgrlyralgryeeAlelle 69 
                 +l+ la+v  r+g++  A++ll ++le +     p       ++  Lg+l ++lg++++A++++e
  KOO21760.1 161 LLHALAMVDVRAGDMGSARKLLSAVLEHH-----PR---FTLAYLSLGQLEERLGNLQAARRHYE 217
                 6889*********************8888.....42...23589********************8 PP

  == domain 5  score: 18.0 bits;  conditional E-value: 3.3e-06
      TPR_12   5 alnnlaavlrrlgrydeAlellekaleiarrllGpdhpltattlrnLgrlyralgryeeAlelleealaiae 76 
                 a+  l++++ rlg+++ A++++e+   +++  +G+ ++++++  +  +r+ ++l+r++ Al+ +++a+++++
  KOO21760.1 195 AYLSLGQLEERLGNLQAARRHYEAG--AITPQPGG-NLGAVQLWQSWARIEQRLERPALALATYKRATQLYK 263
                 5657*********************..56788998.67********************************98 PP

  == domain 6  score: 7.2 bits;  conditional E-value: 0.0073
      TPR_12  10 aavlrrlgrydeAlellekaleiarrllGpdhpltattlrnLgrlyralgryeeAlelleealai 74 
                 aa++ r g+ + A++l+ +  +++   +Gp+  +    l++ + l ++ g+ +eA++l+ ea a+
  KOO21760.1 308 AALEVRCGEVQAARALYAAGAAVRVLPQGPTATERMPLLHAWAVLEWRHGERREARRLFDEAEAA 372
                 77778999999999999999999955599********************************9886 PP

  == domain 7  score: -1.2 bits;  conditional E-value: 3.1
      TPR_12  40 dhpltattlrnLgr 53 
                 ++   a   ++Lg 
  KOO21760.1 442 TK---ALLANALGG 452
                 22...333334444 PP

>> TPR_17  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.8   0.0   7.1e-05     0.058       2      31 ..      11      40 ..      10      43 .. 0.89
   2 !   12.5   0.1   0.00018      0.15       2      33 ..      45      76 ..      44      77 .. 0.92
   3 ?   -0.2   0.0       2.1   1.7e+03       2      17 ..      79      94 ..      78     110 .. 0.74
   4 ?    1.1   0.1      0.82   6.7e+02       2      32 ..     113     142 ..     112     144 .. 0.57
   5 !   14.5   0.0   4.2e-05     0.035       4      33 ..     184     213 ..     181     214 .. 0.93
   6 ?    1.0   0.0      0.89   7.3e+02       1      31 [.     254     284 ..     254     287 .. 0.79
   7 ?   -0.6   0.0       2.9   2.3e+03       2      32 ..     400     430 ..     399     432 .. 0.85

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 7.1e-05
      TPR_17  2 ylkaleldPnnadaynnLAelllknGdlmt 31
                +++   l P n +++  LA++++++ d+++
  KOO21760.1 11 LQRLTLLTPENGKVWMKLANVYRNQRDYKM 40
                67788899*******************987 PP

  == domain 2  score: 12.5 bits;  conditional E-value: 0.00018
      TPR_17  2 ylkaleldPnnadaynnLAelllknGdlmtAr 33
                +++a++ +P+na + + LA l ++  ++ +Ar
  KOO21760.1 45 LRRAIDACPTNALLRQALADLCRESRRYPEAR 76
                579*******************9999999987 PP

  == domain 3  score: -0.2 bits;  conditional E-value: 2.1
      TPR_17  2 ylkaleldPnnadayn 17
                y++a++l+P  + +y 
  KOO21760.1 79 YREAMKLEPALSSVYD 94
                99*******9999885 PP

  == domain 4  score: 1.1 bits;  conditional E-value: 0.82
      TPR_17   2 ylkaleldPnnadaynnLAelllknGdlmtA 32 
                 y++ l++ Pn a + + L++ll ++G  ++A
  KOO21760.1 113 YERGLKHAPN-ARLCHALGVLLDRQGAAEKA 142
                 6777766664.44445666666666655555 PP

  == domain 5  score: 14.5 bits;  conditional E-value: 4.2e-05
      TPR_17   4 kaleldPnnadaynnLAelllknGdlmtAr 33 
                  +le++P    ay  L++l +++G+l+ Ar
  KOO21760.1 184 AVLEHHPRFTLAYLSLGQLEERLGNLQAAR 213
                 589*************************98 PP

  == domain 6  score: 1.0 bits;  conditional E-value: 0.89
      TPR_17   1 lylkaleldPnnadaynnLAelllknGdlmt 31 
                 +y++a +l++++a ++   A+l  + Gd +t
  KOO21760.1 254 TYKRATQLYKDDAQLLVGWAKLEGEHGDVGT 284
                 69***********999877777777777665 PP

  == domain 7  score: -0.6 bits;  conditional E-value: 2.9
      TPR_17   2 ylkaleldPnnadaynnLAelllknGdlmtA 32 
                 y +a+   P ++ a+ + Ael ++ G+ ++A
  KOO21760.1 400 YGRAVNAAPMDSSAWSMWAELEAEHGNEERA 430
                 67788888889999999999*9999999887 PP

>> TPR_1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.0   2.2e-05     0.018       2      34 .]      23      55 ..      22      55 .. 0.95
   2 !   10.0   0.1   0.00076      0.62       7      32 ..      62      87 ..      59      89 .. 0.92
   3 ?    4.2   0.0     0.053        43      13      33 ..     102     122 ..      97     122 .. 0.88
   4 ?   -1.0   0.0       2.2   1.8e+03       2      21 ..     124     143 ..     123     151 .. 0.78
   5 !    8.8   0.2    0.0018       1.5       3      25 ..     195     217 ..     193     219 .. 0.94
   6 !    6.5   0.0    0.0099       8.1       8      33 ..     239     264 ..     232     265 .. 0.82

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 2.2e-05
                HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH CS
       TPR_1  2 kalynlGnayfklgkydeAleyyekALelnPnn 34
                k++  l+n+y+++ +y+  +   ++A+  +P+n
  KOO21760.1 23 KVWMKLANVYRNQRDYKMGERTLRRAIDACPTN 55
                78**************************99987 PP

  == domain 2  score: 10.0 bits;  conditional E-value: 0.00076
                HHHHHHHTT-HHHHHHHHHHHHHHST CS
       TPR_1  7 lGnayfklgkydeAleyyekALelnP 32
                l+ ++++  +y eA  +y++A +l+P
  KOO21760.1 62 LADLCRESRRYPEARSHYREAMKLEP 87
                678899999***************99 PP

  == domain 3  score: 4.2 bits;  conditional E-value: 0.053
                 HTT-HHHHHHHHHHHHHHSTT CS
       TPR_1  13 klgkydeAleyyekALelnPn 33 
                 +lg    A + ye+ L++ Pn
  KOO21760.1 102 QLGHSAAAAALYERGLKHAPN 122
                 7888899************98 PP

  == domain 4  score: -1.0 bits;  conditional E-value: 2.2
                 HHHHHHHHHHHHTT-HHHHH CS
       TPR_1   2 kalynlGnayfklgkydeAl 21 
                 + +  lG+++ ++g  ++A 
  KOO21760.1 124 RLCHALGVLLDRQGAAEKAR 143
                 567789*******9988886 PP

  == domain 5  score: 8.8 bits;  conditional E-value: 0.0018
                 HHHHHHHHHHHTT-HHHHHHHHH CS
       TPR_1   3 alynlGnayfklgkydeAleyye 25 
                 a+  lG++  +lg+++ A  +ye
  KOO21760.1 195 AYLSLGQLEERLGNLQAARRHYE 217
                 89********************8 PP

  == domain 6  score: 6.5 bits;  conditional E-value: 0.0099
                 HHHHHHTT-HHHHHHHHHHHHHHSTT CS
       TPR_1   8 GnayfklgkydeAleyyekALelnPn 33 
                 + + ++l+++  Al+ y++A +l+ +
  KOO21760.1 239 ARIEQRLERPALALATYKRATQLYKD 264
                 55667899**************9877 PP

>> TPR_19  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.9   0.5   7.2e-05     0.058       9      68 .]       6      65 ..       5      65 .. 0.94
   2 !   14.4   0.4   4.9e-05      0.04       6      57 ..      37      88 ..      35      95 .. 0.84
   3 !   13.7   1.9   8.3e-05     0.067       5      62 ..     104     162 ..     100     168 .. 0.81
   4 !   16.5   0.2   1.1e-05    0.0089       3      46 ..     171     214 ..     169     220 .. 0.94
   5 ?    4.3   1.0     0.071        58       6      57 ..     247     298 ..     241     310 .. 0.77
   6 ?    2.2   0.2      0.32   2.6e+02       5      50 ..     280     326 ..     278     332 .. 0.77
   7 ?   -2.2   0.0       7.6   6.2e+03       8      52 ..     360     370 ..     350     382 .. 0.58
   8 ?   -0.1   0.1       1.7   1.4e+03      17      35 ..     432     450 ..     427     450 .. 0.88

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 7.2e-05
      TPR_19  9 eAlalleqalqedpknaearllLAeallalgqldeAealLdalpeedpddaryasLlAkl 68
                eA+ ll+++    p+n+ +++ LA+++ ++ +++  e++L ++ ++ p +a ++++lA l
  KOO21760.1  6 EAAVLLQRLTLLTPENGKVWMKLANVYRNQRDYKMGERTLRRAIDACPTNALLRQALADL 65
                8999****9999*********************************999999999999865 PP

  == domain 2  score: 14.4 bits;  conditional E-value: 4.9e-05
      TPR_19  6 dyaeAlalleqalqedpknaearllLAeallalgqldeAealLdalpeedpd 57
                dy    + l++a+++ p na +r +LA+++ ++ ++ eA+    ++++ +p 
  KOO21760.1 37 DYKMGERTLRRAIDACPTNALLRQALADLCRESRRYPEARSHYREAMKLEPA 88
                5555567899******************************988888877776 PP

  == domain 3  score: 13.7 bits;  conditional E-value: 8.3e-05
      TPR_19   5 gdyaeAlalleqalqedpknaearllLAeallalgqldeAealLda...lpeedpddarya 62 
                 g  a+A+al+e+ l+++p na++  +L  +l  +g  ++A+ +L++   lp+ed++ +++ 
  KOO21760.1 104 GHSAAAAALYERGLKHAP-NARLCHALGVLLDRQGAAEKARSVLKRglgLPNEDRN-PQLL 162
                 7789*********99999.8888889*******************94445666666.4444 PP

  == domain 4  score: 16.5 bits;  conditional E-value: 1.1e-05
      TPR_19   3 aegdyaeAlalleqalqedpknaearllLAeallalgqldeAea 46 
                  +gd  +A +ll+++l++ p    a l L ++   lg+l++A++
  KOO21760.1 171 RAGDMGSARKLLSAVLEHHPRFTLAYLSLGQLEERLGNLQAARR 214
                 689***************************************96 PP

  == domain 5  score: 4.3 bits;  conditional E-value: 0.071
      TPR_19   6 dyaeAlalleqalqedpknaearllLAeallalgqldeAealLdalpeedpd 57 
                 ++a Ala +++a q + ++a ++ + A++  + g++   +al +++  + ++
  KOO21760.1 247 RPALALATYKRATQLYKDDAQLLVGWAKLEGEHGDVGTSRALFARAVSSVAK 298
                 6788******************999998877777766666666666666555 PP

  == domain 6  score: 2.2 bits;  conditional E-value: 0.32
      TPR_19   5 gdyaeAlalleqa.lqedpknaearllLAeallalgqldeAealLda 50 
                 gd     al+++a  + + ++++a    A + +  g++++A+al +a
  KOO21760.1 280 GDVGTSRALFARAvSSVAKHSPYAYQCAAALEVRCGEVQAARALYAA 326
                 66777778899984566777777777778888899******999876 PP

  == domain 7  score: -2.2 bits;  conditional E-value: 7.6
      TPR_19   8 aeAlalleqalqedpknaearllLAeallalgqldeAealLdalp 52 
                  eA +l+ +a                                   
  KOO21760.1 360 REARRLFDEA----------------------------------E 370
                 4555555554..................................2 PP

  == domain 8  score: -0.1 bits;  conditional E-value: 1.7
      TPR_19  17 alqedpknaearllLAeal 35 
                 al+  +++ e ++lLA+al
  KOO21760.1 432 ALSRHAQQVETKALLANAL 450
                 789999**********997 PP

>> TPR_15  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.8  10.7   1.7e-09   1.4e-06      12     257 ..      26     275 ..      13     288 .. 0.89
   2 ?    1.8   0.3      0.14   1.2e+02     124     173 ..     280     328 ..     265     343 .. 0.72
   3 ?    2.2   4.9      0.11        88     128     222 ..     361     452 ..     341     469 .. 0.72

  Alignments for each domain:
  == domain 1  score: 27.8 bits;  conditional E-value: 1.7e-09
      TPR_15  12 lklatllykqgdvkkAlevLkeaaqkaapskdteyWrtladLAwalqqedearkAyrqLlasgkaraedyerliel.lydaepkeaarlaekgwrrfrs 109
                 +kla++  +q+d+k + + L +a++    ++++   + ladL ++ +++ ear  yr+ ++ + a ++ y++  ++  +     +aa+l e g ++  +
  KOO21760.1  26 MKLANVYRNQRDYKMGERTLRRAIDAC--PTNALLRQALADLCRESRRYPEARSHYREAMKLEPALSSVYDSWGRMeAQLGHSAAAAALYERGLKHAPN 122
                 89******************7766655..8999999****************************************88999999999999***999999 PP

      TPR_15 110 prlLssalellerakdydriaellksleeeeaaeqsaafllaraelyrqegqtdaAlrdyreAlalapdsselraallWlliDlgrraeLrellkawka 208
                  rl  +   ll+r++++++ +++lk+   +++  ++++ l a+a +  ++g+   A +++  +l+  p    +  a+l l    +r  +L+++ ++++a
  KOO21760.1 123 ARLCHALGVLLDRQGAAEKARSVLKRGLGLPNEDRNPQLLHALAMVDVRAGDMGSARKLLSAVLEHHPR---FTLAYLSLGQLEERLGNLQAARRHYEA 218
                 99999888999*********************************************************9...444444333323344459999999999 PP

      TPR_15 209 ra........esdasLwgplaaAlllLgrpkkALeylrkqakenrkdplwllaYADa 257
                  a            +Lw+  a   ++L+rp+ AL+ +++ ++  ++d+  l+ +A  
  KOO21760.1 219 GAitpqpggnLGAVQLWQSWARIEQRLERPALALATYKRATQLYKDDAQLLVGWAKL 275
                 999***99988899**********************************999999865 PP

  == domain 2  score: 1.8 bits;  conditional E-value: 0.14
      TPR_15 124 kdydriaellksleeeeaaeqsaafllaraelyrqegqtdaAlrdyreAl 173
                 +d+ + ++l++++   + a+ s++ ++  a+l+ + g+ +aA  +y  + 
  KOO21760.1 280 GDVGTSRALFARA-VSSVAKHSPYAYQCAAALEVRCGEVQAARALYAAGA 328
                 5666666777773.345699*****************9999988886543 PP

  == domain 3  score: 2.2 bits;  conditional E-value: 0.11
      TPR_15 128 riaellksleeeeaaeqsaaflla..raelyrqegqtdaAlrdyreAlalapdsselraallWlliDlgrrae.LrellkawkaraesdasLwgplaa 222
                 + ++l+ +    eaa++sa  +l+  ra++++ e+    A + y +A+++ap +s++ +  +W+ ++++  +e    +l++  ++ e++a L ++l+ 
  KOO21760.1 361 EARRLFDE---AEAASDSACGWLLqwRARFES-ESSLVLARHYYGRAVNAAPMDSSAWS--MWAELEAEHGNEeRATALSRHAQQVETKALLANALGG 452
                 55555555...566778887776622555544.4567889999*********9887665..8888888888873456889988888999999988875 PP

>> TPR_7  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.7   0.0     0.045        37       5      16 ..      28      39 ..      24      51 .. 0.84
   2 !   13.6   0.1   6.3e-05     0.051       4      32 ..      61      87 ..      58      93 .. 0.85
   3 ?    4.1   0.0     0.066        54      11      32 ..     102     121 ..      97     124 .. 0.87
   4 !    8.0   0.0     0.004       3.3       2      28 ..     126     152 ..     125     175 .. 0.84
   5 ?    6.3   0.0     0.014        11       1      24 [.     195     218 ..     195     230 .. 0.93
   6 ?   -1.9   0.2       5.5   4.5e+03      11      25 ..     244     258 ..     239     267 .. 0.67
   7 ?   -2.5   0.0       8.6     7e+03      11      24 ..     313     326 ..     312     333 .. 0.81
   8 ?   -2.4   0.1       8.3   6.8e+03      13      24 ..     357     368 ..     354     374 .. 0.80

  Alignments for each domain:
  == domain 1  score: 4.7 bits;  conditional E-value: 0.045
       TPR_7  5 LarlysrlGdye 16
                La++y++++dy+
  KOO21760.1 28 LANVYRNQRDYK 39
                9**********8 PP

  == domain 2  score: 13.6 bits;  conditional E-value: 6.3e-05
       TPR_7  4 nLarlysrlGdyeeAielyeqsLaltkdp 32
                +La+l+++ ++y eA ++y++  a+  +p
  KOO21760.1 61 ALADLCRESRRYPEARSHYRE--AMKLEP 87
                8********************..665544 PP

  == domain 3  score: 4.1 bits;  conditional E-value: 0.066
       TPR_7  11 rlGdyeeAielyeqsLaltkdp 32 
                 +lG+ + A+ lye+  +l  +p
  KOO21760.1 102 QLGHSAAAAALYER--GLKHAP 121
                 69999*********..998776 PP

  == domain 4  score: 8.0 bits;  conditional E-value: 0.004
       TPR_7   2 LlnLarlysrlGdyeeAielyeqsLal 28 
                 +++L++l  r+G  e+A +++++ L+l
  KOO21760.1 126 CHALGVLLDRQGAAEKARSVLKRGLGL 152
                 89********************94443 PP

  == domain 5  score: 6.3 bits;  conditional E-value: 0.014
       TPR_7   1 aLlnLarlysrlGdyeeAielyeq 24 
                 a+l L++l +rlG+ + A ++ye+
  KOO21760.1 195 AYLSLGQLEERLGNLQAARRHYEA 218
                 7999******************98 PP

  == domain 6  score: -1.9 bits;  conditional E-value: 5.5
       TPR_7  11 rlGdyeeAielyeqs 25 
                 rl + + A+  y+++
  KOO21760.1 244 RLERPALALATYKRA 258
                 666677788888883 PP

  == domain 7  score: -2.5 bits;  conditional E-value: 8.6
       TPR_7  11 rlGdyeeAielyeq 24 
                 r+G+ + A  ly +
  KOO21760.1 313 RCGEVQAARALYAA 326
                 78999999999976 PP

  == domain 8  score: -2.4 bits;  conditional E-value: 8.3
       TPR_7  13 GdyeeAielyeq 24 
                 G+++eA +l+ +
  KOO21760.1 357 GERREARRLFDE 368
                 889999999876 PP

>> TPR_11  TPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.6   0.0      0.14   1.1e+02      12      39 ..       6      33 ..       3      35 .. 0.88
   2 ?    1.8   0.0      0.24     2e+02      17      35 ..      45      63 ..      43      66 .. 0.83
   3 !    9.6   0.0   0.00086       0.7       2      27 ..      64      89 ..      63      93 .. 0.85
   4 ?    1.2   0.1      0.37     3e+02       1      28 [.      97     123 ..      97     137 .. 0.72
   5 ?    1.4   0.0      0.31   2.5e+02      13      39 ..     178     204 ..     170     207 .. 0.63
   6 ?    0.7   0.1      0.52   4.3e+02       3      12 ..     195     204 ..     193     218 .. 0.71
   7 !    6.5   0.1    0.0083       6.8      13      30 ..     251     268 ..     249     274 .. 0.91

  Alignments for each domain:
  == domain 1  score: 2.6 bits;  conditional E-value: 0.14
      TPR_11 12 eAieaYkkAlkldPdnaeayynLGlayy 39
                eA   +++   l+P+n  ++ +L+++y 
  KOO21760.1  6 EAAVLLQRLTLLTPENGKVWMKLANVYR 33
                78888999999***************95 PP

  == domain 2  score: 1.8 bits;  conditional E-value: 0.24
      TPR_11 17 YkkAlkldPdnaeayynLG 35
                +++A++ +P+na +  +L+
  KOO21760.1 45 LRRAIDACPTNALLRQALA 63
                79**********8877766 PP

  == domain 3  score: 9.6 bits;  conditional E-value: 0.00086
      TPR_11  2 dayyeqGkyeeAieaYkkAlkldPdn 27
                d+++e  +y+eA  +Y++A kl P  
  KOO21760.1 64 DLCRESRRYPEARSHYREAMKLEPAL 89
                67788889***************975 PP

  == domain 4  score: 1.2 bits;  conditional E-value: 0.37
      TPR_11   1 GdayyeqGkyeeAieaYkkAlkldPdna 28 
                 G++  ++G   +A + Y++ lk  P+ a
  KOO21760.1  97 GRMEAQLGHSAAAAALYERGLKHAPN-A 123
                 77888899999999999999987774.4 PP

  == domain 5  score: 1.4 bits;  conditional E-value: 0.31
      TPR_11  13 AieaYkkAlkldPdnaeayynLGlayy 39 
                 A + +++ l+  P +  ay+ LG++  
  KOO21760.1 178 ARKLLSAVLEHHPRFTLAYLSLGQLEE 204
                 555666666666677777777777655 PP

  == domain 6  score: 0.7 bits;  conditional E-value: 0.52
      TPR_11   3 ayyeqGkyee 12 
                 ay ++G++ee
  KOO21760.1 195 AYLSLGQLEE 204
                 6778888877 PP

  == domain 7  score: 6.5 bits;  conditional E-value: 0.0083
      TPR_11  13 AieaYkkAlkldPdnaea 30 
                 A++ Yk+A +l  d+a +
  KOO21760.1 251 ALATYKRATQLYKDDAQL 268
                 9*************9976 PP

>> TPR_9  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.1   0.1    0.0017       1.4      18      69 ..      11      62 ..       4      66 .. 0.90
   2 !    8.8   1.5    0.0022       1.8      36      68 ..      97     129 ..      93     147 .. 0.86
   3 ?    5.3   0.3     0.026        21      10      61 ..     138     191 ..     130     197 .. 0.79
   4 !    8.7   1.6    0.0024       1.9       7      53 ..     171     217 ..     165     221 .. 0.90
   5 ?    3.9   0.6     0.074        60      30      64 ..     233     267 ..     230     273 .. 0.75
   6 ?    3.5   0.8     0.097        79      24      65 ..     296     339 ..     284     347 .. 0.79

  Alignments for each domain:
  == domain 1  score: 9.1 bits;  conditional E-value: 0.0017
       TPR_9 18 verllllaPddpeerrdRGlllaqlGclsaAladLeaylalapdapdaeair 69
                ++rl ll P+    ++  + ++  + +++ + + L ++++ +p ++  +++ 
  KOO21760.1 11 LQRLTLLTPENGKVWMKLANVYRNQRDYKMGERTLRRAIDACPTNALLRQAL 62
                689****************************************988877765 PP

  == domain 2  score: 8.8 bits;  conditional E-value: 0.0022
       TPR_9  36 GlllaqlGclsaAladLeaylalapdapdaeai 68 
                 G+++aqlG+ +aA+a  e+ l +ap+a+  +a+
  KOO21760.1  97 GRMEAQLGHSAAAAALYERGLKHAPNARLCHAL 129
                 8999*********************88766555 PP

  == domain 3  score: 5.3 bits;  conditional E-value: 0.026
       TPR_9  10 dweralavverllllaPdd..peerrdRGlllaqlGclsaAladLeaylalapd 61 
                  +e+a  v+ r l l+ +d  p+++   +++ ++ G++  A++ L a l++ p 
  KOO21760.1 138 AAEKARSVLKRGLGLPNEDrnPQLLHALAMVDVRAGDMGSARKLLSAVLEHHPR 191
                 5666666777777775443339999999***********************995 PP

  == domain 4  score: 8.7 bits;  conditional E-value: 0.0024
       TPR_9   7 reedweralavverllllaPddpeerrdRGlllaqlGclsaAladLe 53 
                 r+ d+  a + +  +l  +P+    ++  G+l+++lG+l+aA++  e
  KOO21760.1 171 RAGDMGSARKLLSAVLEHHPRFTLAYLSLGQLEERLGNLQAARRHYE 217
                 778888999999999999*************************9877 PP

  == domain 5  score: 3.9 bits;  conditional E-value: 0.074
       TPR_9  30 eerrdRGlllaqlGclsaAladLeaylalapdapd 64 
                 +++   ++++++l++++ Ala   ++ +l  d+++
  KOO21760.1 233 QLWQSWARIEQRLERPALALATYKRATQLYKDDAQ 267
                 66777788888888888888888888888777766 PP

  == domain 6  score: 3.5 bits;  conditional E-value: 0.097
       TPR_9  24 laPddpeerrdRGlllaqlGclsaAladLeayl..alapdapda 65 
                 +a ++p+ +   + l+++ G ++aA+a   a +  ++ p+ p+a
  KOO21760.1 296 VAKHSPYAYQCAAALEVRCGEVQAARALYAAGAavRVLPQGPTA 339
                 67899********************9876653333666666666 PP

>> FAT  FAT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.7   0.1   0.00013      0.11     138     223 ..      19     100 ..       5     264 .. 0.69
   2 ?    4.2   0.3     0.026        21     268     313 ..     393     438 ..     350     452 .. 0.78

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.00013
                 CHCHCCS-STTCCCCCCCCHCHHHHCCSTTHHCCCCCHCTT......TT.TSSCCCHHHHHHHCCHHHHHSSCCHHHHCCTSSCCC..S CS
         FAT 138 iedllkgvkaemwlkfanlarksgrlslAekaLkelleedp.eewlprappevvyaylKylwssgeqkealqkLreftsellekke..e 223
                  e+       ++w+k an+ r++  +++ e++L+++++  p +  l +a  ++  ++ +y  ++++ +ea+ kL+  +s+++++ +  e
  KOO21760.1  19 PEN------GKVWMKLANVYRNQRDYKMGERTLRRAIDACPtNALLRQALADLCRESRRYPEARSHYREAM-KLEPALSSVYDSWGrmE 100
                 344......79*************************99999555555888899999999999999888887.57777777766655343 PP

  == domain 2  score: 4.2 bits;  conditional E-value: 0.026
                 -SSCCHHHHCCHHCTCCCHSTTCCCCHHHHHCCHHHHHHSSSS.S- CS
         FAT 268 ieeilqsysaateidpswykawhtwalfnfevvskeeeqkeeeepe 313
                    + ++y +a+  +p    aw  wa ++ e+ ++e+ ++ + + +
  KOO21760.1 393 LVLARHYYGRAVNAAPMDSSAWSMWAELEAEHGNEERATALSRHAQ 438
                 555678999*******99****************998875544433 PP

>> Suf  Suppressor of forked protein (Suf)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.6   0.0   0.00012     0.099      10     144 ..      65     269 ..      61     301 .. 0.85
   2 ?    1.2   0.0      0.36     3e+02      53     103 ..     249     299 ..     233     326 .. 0.57

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 0.00012
         Suf  10 asrRaeGikgaRkvFkkARkkprltyevyvasAllEyyiskdkkvAtkIFelGlKkFpedeefvlkYldyLisln.ddnnaRvlfekvvsklskeke.. 105
                  +r +++  +aR+ + +A k +   + vy   + +E +    ++ A   +e+GlK+ p+    + + l  L++     ++aR+++ + +  + ++++  
  KOO21760.1  65 LCRESRRYPEARSHYREAMKLEPALSSVYDSWGRMEAQLGHSAA-AAALYERGLKHAPNAR--LCHALGVLLDRQgAAEKARSVLKRGLGLPNEDRNpq 160
                 678889999*****************************999999.**********988865..566666666554167889999999999988888888 PP

         Suf 106 ......................................................................akelykkfleyestfgdlssilklekRme 134
                                                                                       a +l++ +++ e++    +  l   kR  
  KOO21760.1 161 llhalamvdvragdmgsarkllsavlehhprftlaylslgqleerlgnlqaarrhyeagaitpqpggnlgAVQLWQSWARIEQRLERPALALATYKRAT 259
                 999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 PP

         Suf 135 elfpedskle 144
                 +l+++d++l 
  KOO21760.1 260 QLYKDDAQLL 269
                 9999988875 PP

  == domain 2  score: 1.2 bits;  conditional E-value: 0.36
         Suf  53 kvAtkIFelGlKkFpedeefvlkYldyLislnddnnaRvlfekvvsklske 103
                 ++A   + ++ +++++d + ++ + +   +  d+ + R+lf ++vs+++k+
  KOO21760.1 249 ALALATYKRATQLYKDDAQLLVGWAKLEGEHGDVGTSRALFARAVSSVAKH 299
                 344444555555555555555555555555556666666666666666665 PP

>> ANAPC3  Anaphase-promoting complex, cyclosome, subunit 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.1   8.5e-05     0.069       7      81 ..       6      81 ..       1      82 [. 0.82
   2 ?    1.9   0.0      0.31   2.6e+02       8      68 ..     109     169 ..     105     185 .. 0.67
   3 ?    2.7   0.0      0.18   1.5e+02      19      80 ..     155     217 ..     138     219 .. 0.74
   4 ?   -1.2   0.2         3   2.4e+03      50      78 ..     294     323 ..     279     326 .. 0.74

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 8.5e-05
                HHHHHHHHHH.HHH--HHHHHHHHHHHHHTT-HHHHHHHHHCT.SHHHC-HHHHHHHHHHHHHTT-HHHHHHHH-S CS
      ANAPC3  7 nAiflaerllaaetespedayllAlclylngqykrAyellrka.klnskslgcrylfAqcllkLkkyeeAiaaLek 81
                +A  l+ rl    +e+ +  + lA ++ ++ +yk   + lr+a +  +++   r  +A  + +  +y eA++++ +
  KOO21760.1  6 EAAVLLQRLTLLTPENGKVWMKLANVYRNQRDYKMGERTLRRAiDACPTNALLRQALADLCRESRRYPEARSHYRE 81
                45555555552555555556668************************************************99876 PP

  == domain 2  score: 1.9 bits;  conditional E-value: 0.31
                 HHHHHHHHH.HHH--HHHHHHHHHHHHHTT-HHHHHHHHHCT.SHHHC-HHHHHHHHHHHHH CS
      ANAPC3   8 AiflaerllaaetespedayllAlclylngqykrAyellrka.klnskslgcrylfAqcllk 68 
                 A  l+er l +++ ++   ++l+  l ++g  ++A  +l++  +l +++ +  +l+A + ++
  KOO21760.1 109 AAALYERGL-KHAPNARLCHALGVLLDRQGAAEKARSVLKRGlGLPNEDRNPQLLHALAMVD 169
                 555666666.4444444456678888899999999999999888888777777777766654 PP

  == domain 3  score: 2.7 bits;  conditional E-value: 0.18
                 HH--HHHHHHHHHHHHHTT-HHHHHHHHHCT.SHHHC-HHHHHHHHHHHHHTT-HHHHHHHH- CS
      ANAPC3  19 etespedayllAlclylngqykrAyellrka.klnskslgcrylfAqcllkLkkyeeAiaaLe 80 
                 e ++p+ +++lA +  ++g+  +A +ll+   +  ++   + + ++q    L++++ A++++e
  KOO21760.1 155 EDRNPQLLHALAMVDVRAGDMGSARKLLSAVlEHHPRFTLAYLSLGQLEERLGNLQAARRHYE 217
                 45667778889999999************9933333333555556677778888888888876 PP

  == domain 4  score: -1.2 bits;  conditional E-value: 3
                 SHHHC-HHHHHHHHHHH.HHTT-HHHHHHH CS
      ANAPC3  50 klnskslgcrylfAqcl.lkLkkyeeAiaa 78 
                  +  k+  ++y +A +l +  ++++ A+a+
  KOO21760.1 294 SSVAKHSPYAYQCAAALeVRCGEVQAARAL 323
                 455688889999998884477888888776 PP

>> Fis1_TPR_C  Fis1 C-terminal tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.1       5.2   4.3e+03      14      34 ..      35      55 ..      31      62 .. 0.76
   2 ?    0.8   0.1      0.65   5.3e+02      15      33 ..      70      88 ..      67      93 .. 0.88
   3 ?    7.6   0.0     0.005       4.1       5      34 ..     163     192 ..     160     197 .. 0.86
   4 ?    0.3   0.0      0.93   7.6e+02       6      24 ..     196     216 ..     193     218 .. 0.82

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 5.2
                HT-HHHHHHHHHHHHHHTTS- CS
  Fis1_TPR_C 14 lgeYseArryvdalLeiEPen 34
                +++Y++  r +++ +   P n
  KOO21760.1 35 QRDYKMGERTLRRAIDACPTN 55
                578888888888877776666 PP

  == domain 2  score: 0.8 bits;  conditional E-value: 0.65
                T-HHHHHHHHHHHHHHTTS CS
  Fis1_TPR_C 15 geYseArryvdalLeiEPe 33
                ++Y eAr   +  +++EP 
  KOO21760.1 70 RRYPEARSHYREAMKLEPA 88
                689**************97 PP

  == domain 3  score: 7.6 bits;  conditional E-value: 0.005
                 HHHHHHHHHHT-HHHHHHHHHHHHHHTTS- CS
  Fis1_TPR_C   5 YylAlGhyklgeYseArryvdalLeiEPen 34 
                 + lA+   + g+   Ar+++ a+Le++P++
  KOO21760.1 163 HALAMVDVRAGDMGSARKLLSAVLEHHPRF 192
                 55777788999999**************97 PP

  == domain 4  score: 0.3 bits;  conditional E-value: 0.93
                 HHHHHHH..HHT-HHHHHHHH CS
  Fis1_TPR_C   6 ylAlGhy..klgeYseArryv 24 
                 yl+lG++  +lg+ + Arr  
  KOO21760.1 196 YLSLGQLeeRLGNLQAARRHY 216
                 8999987779******99965 PP

>> ChAPs  ChAPs (Chs5p-Arf1p-binding proteins)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.2   0.0     0.011       8.7     257     297 ..      11      55 ..       2      90 .. 0.77
   2 ?    4.0   0.1     0.026        21     236     281 ..     380     424 ..     363     433 .. 0.74

  Alignments for each domain:
  == domain 1  score: 5.2 bits;  conditional E-value: 0.011
                 HHHHHHH-TT-HHHHHHHHHHHHHTT-HHHHHHHH....HT---- CS
       ChAPs 257 akravksaPsefktWalLvkvYikledienALltL....NscPmf 297
                  +r + ++P + k W++L++vY ++ d++    tL     +cP +
  KOO21760.1  11 LQRLTLLTPENGKVWMKLANVYRNQRDYKMGERTLrraiDACPTN 55 
                 56667789*******************976544431112567765 PP

  == domain 2  score: 4.0 bits;  conditional E-value: 0.026
                 HHHHHHHHHHHSS--HHHHHHHHHHHHH-TT-HHHHHHHHHHHHHT CS
       ChAPs 236 lLllqaefllskkkeelAlevakravksaPsefktWalLvkvYikl 281
                 lL+ +a f  s+++  lA +   rav++aP +++ W + ++   + 
  KOO21760.1 380 LLQWRARFE-SESSLVLARHYYGRAVNAAPMDSSAWSMWAELEAEH 424
                 555566653.3344579999999*************9988765555 PP

>> TPR_20  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.0   0.0     0.037        30       9      44 ..      43      78 ..      35      88 .. 0.88
   2 ?    4.7   0.2     0.047        38      41      89 ..     138     186 ..     106     196 .. 0.68
   3 ?    1.4   0.1       0.5   4.1e+02      14      42 ..     403     431 ..     400     440 .. 0.91

  Alignments for each domain:
  == domain 1  score: 5.0 bits;  conditional E-value: 0.037
      TPR_20  9 aeleaalaanpddldarldlAlallaagryeeAleq 44
                ++l++a+ a p++  +r +lA++  +  ry eA ++
  KOO21760.1 43 RTLRRAIDACPTNALLRQALADLCRESRRYPEARSH 78
                6899**************************999766 PP

  == domain 2  score: 4.7 bits;  conditional E-value: 0.047
      TPR_20  41 AleqLleilkrdrkweddaarkqllkifealgsqdplvakyRrkLsslL 89 
                 A+e+  ++lkr ++  +++   qll  +++++ +   +  +R+ Ls++L
  KOO21760.1 138 AAEKARSVLKRGLGLPNEDRNPQLLHALAMVDVRAGDMGSARKLLSAVL 186
                 5555555556666665555566666666666665555555555555554 PP

  == domain 3  score: 1.4 bits;  conditional E-value: 0.5
      TPR_20  14 alaanpddldarldlAlallaagryeeAl 42 
                 a++a+p d  a   +A++ ++ g++e A 
  KOO21760.1 403 AVNAAPMDSSAWSMWAELEAEHGNEERAT 431
                 7899*********************9996 PP

>> TPR_6  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.3   0.1     0.092        75       3      31 ..      25      53 ..      23      55 .. 0.88
   2 ?    0.9   0.1       1.1   9.3e+02       7      28 ..      61      84 ..      55      88 .. 0.61
   3 ?    0.5   0.0       1.5   1.2e+03      10      25 ..     100     115 ..      95     123 .. 0.73
   4 ?    1.4   0.1      0.79   6.4e+02       6      25 ..     129     148 ..     128     148 .. 0.87
   5 ?    2.6   0.0      0.31   2.5e+02       6      31 ..     165     190 ..     160     191 .. 0.84
   6 ?    4.3   0.7     0.093        76       2      24 ..     195     217 ..     194     218 .. 0.92
   7 ?    4.0   0.4      0.11        92       3      30 ..     233     262 ..     231     264 .. 0.79
   8 ?    2.1   0.0      0.46   3.8e+02       1      28 [.     265     294 ..     265     298 .. 0.88
   9 ?   -0.2   0.1       2.5     2e+03       7      24 ..     350     367 ..     315     369 .. 0.68

  Alignments for each domain:
  == domain 1  score: 4.3 bits;  conditional E-value: 0.092
                HHHHHHHHHHHHHHHHHHHHHHHHHHH-T CS
       TPR_6  3 lyklalsyrklgdtdkAlealerlikeYP 31
                 +kla  yr++ d+    ++l+r i+  P
  KOO21760.1 25 WMKLANVYRNQRDYKMGERTLRRAIDACP 53
                579*******99***********999877 PP

  == domain 2  score: 0.9 bits;  conditional E-value: 1.1
                HHHHH.H.HHHHHHHHHHHHHHHH CS
       TPR_6  7 alsyr.k.lgdtdkAlealerlik 28
                al+ + +   ++ +A+  +++  k
  KOO21760.1 61 ALADLcReSRRYPEARSHYREAMK 84
                544443323599999999988766 PP

  == domain 3  score: 0.5 bits;  conditional E-value: 1.5
                 HHHHHHHHHHHHHHHH CS
       TPR_6  10 yrklgdtdkAlealer 25 
                   +lg +++A +++er
  KOO21760.1 100 EAQLGHSAAAAALYER 115
                 4557899999999998 PP

  == domain 4  score: 1.4 bits;  conditional E-value: 0.79
                 HHHHHHHHHHHHHHHHHHHH CS
       TPR_6   6 lalsyrklgdtdkAlealer 25 
                 l+ ++ ++g ++kA+  l+r
  KOO21760.1 129 LGVLLDRQGAAEKARSVLKR 148
                 688999999******99876 PP

  == domain 5  score: 2.6 bits;  conditional E-value: 0.31
                 HHHHHHHHHHHHHHHHHHHHHHHH-T CS
       TPR_6   6 lalsyrklgdtdkAlealerlikeYP 31 
                 la+   ++gd   A+++l  +++ +P
  KOO21760.1 165 LAMVDVRAGDMGSARKLLSAVLEHHP 190
                 677777889**************999 PP

  == domain 6  score: 4.3 bits;  conditional E-value: 0.093
                 HHHHHHHHHHHHHHHHHHHHHHH CS
       TPR_6   2 AlyklalsyrklgdtdkAleale 24 
                 A++ l+++ ++lg+ ++A++ +e
  KOO21760.1 195 AYLSLGQLEERLGNLQAARRHYE 217
                 8899*******99*******998 PP

  == domain 7  score: 4.0 bits;  conditional E-value: 0.11
                 HHHHHHHHHHH..HHHHHHHHHHHHHHHH- CS
       TPR_6   3 lyklalsyrkl..gdtdkAlealerlikeY 30 
                 ++++ ++++++   +++ Al++++r  + Y
  KOO21760.1 233 QLWQSWARIEQrlERPALALATYKRATQLY 262
                 67777888876557888*********9998 PP

  == domain 8  score: 2.1 bits;  conditional E-value: 0.46
                 HHHHHHHHHHHHH..HHHHHHHHHHHHHHH CS
       TPR_6   1 dAlyklalsyrkl..gdtdkAlealerlik 28 
                 dA+++ +++ +++  gd  ++++++ r ++
  KOO21760.1 265 DAQLLVGWAKLEGehGDVGTSRALFARAVS 294
                 7999*******9879999999999999875 PP

  == domain 9  score: -0.2 bits;  conditional E-value: 2.5
                 HHHHHHHHHHHHHHHHHH CS
       TPR_6   7 alsyrklgdtdkAleale 24 
                 a +  + g+ ++A+++++
  KOO21760.1 350 AVLEWRHGERREARRLFD 367
                 334444478888888886 PP

>> HrpB1_HrpK  Bacterial type III secretion protein (HrpB1_HrpK)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.3   0.00013       0.1      27     109 ..       4      87 ..       1      93 [. 0.89
   2 ?    2.1   0.0      0.17   1.4e+02      51      81 ..     165     195 ..     155     215 .. 0.77
   3 ?   -0.5   0.1       1.1   8.7e+02      52      76 ..     350     374 ..     328     381 .. 0.73
   4 ?   -0.3   0.2      0.95   7.7e+02      93     120 ..     410     437 ..     389     443 .. 0.79

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 0.00013
  HrpB1_HrpK  27 tedaellLdalrvLrPevaeldllegvlliergrweeAlrlLreve.aeasgtpyakaLlAlcLaalrDeeWrayAeevlesda 109
                 +++a++lL+ l +L Pe+ ++ +  ++++ ++++++ + r+Lr    a+++++ + +aL  lc + +r +e r +  e+++ ++
  KOO21760.1   4 DKEAAVLLQRLTLLTPENGKVWMKLANVYRNQRDYKMGERTLRRAIdACPTNALLRQALADLCRESRRYPEARSHYREAMKLEP 87 
                 67999*************************************8754399999***************99999999988887665 PP

  == domain 2  score: 2.1 bits;  conditional E-value: 0.17
  HrpB1_HrpK  51 egvlliergrweeAlrlLreveaeasgtpya 81 
                  +++ ++ g++  A++lL+ v ++++++ +a
  KOO21760.1 165 LAMVDVRAGDMGSARKLLSAVLEHHPRFTLA 195
                 4677788888888888888888888887765 PP

  == domain 3  score: -0.5 bits;  conditional E-value: 1.1
  HrpB1_HrpK  52 gvlliergrweeAlrlLreveaeas 76 
                 +vl  + g+  eA+rl+ e ea++ 
  KOO21760.1 350 AVLEWRHGERREARRLFDEAEAASD 374
                 34556788999********997665 PP

  == domain 4  score: -0.3 bits;  conditional E-value: 0.95
  HrpB1_HrpK  93 rDeeWrayAeevlesdadpdalaLvkaL 120
                 + ++W ++Ae   e+ +++ a+aL +  
  KOO21760.1 410 DSSAWSMWAELEAEHGNEERATALSRHA 437
                 5678999999888888888888887765 PP

>> Mad3_BUB1_I  Mad3/BUB1 homology region 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.9   0.3      0.12        99      94     124 .]      87     117 ..      27     117 .. 0.83
   2 ?   -1.1   0.0       2.2   1.8e+03     105     124 .]     131     150 ..     123     150 .. 0.86
   3 ?   -0.8   0.0       1.8   1.5e+03      97     123 ..     193     219 ..     189     220 .. 0.89
   4 ?    2.4   0.1      0.17   1.4e+02      56     123 ..     258     327 ..     242     328 .. 0.76

  Alignments for each domain:
  == domain 1  score: 2.9 bits;  conditional E-value: 0.12
                  TTBHHHHHHHHHHHHHTT-HHHHHHHHHHH. CS
  Mad3_BUB1_I  94 tklalfYeewAellekkgrfkeAeevyelGi 124
                    l+  Y +w ++  + g+ + A ++ye+G+
   KOO21760.1  87 PALSSVYDSWGRMEAQLGHSAAAAALYERGL 117
                  5688999999999999999999999999995 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 2.2
                  HHHHHTT-HHHHHHHHHHH. CS
  Mad3_BUB1_I 105 ellekkgrfkeAeevyelGi 124
                   ll ++g  ++A++v+++G+
   KOO21760.1 131 VLLDRQGAAEKARSVLKRGL 150
                  578999***********996 PP

  == domain 3  score: -0.8 bits;  conditional E-value: 1.8
                  HHHHHHHHHHHHHTT-HHHHHHHHHHH CS
  Mad3_BUB1_I  97 alfYeewAellekkgrfkeAeevyelG 123
                  +l Y +  +l e+ g+++ A++ ye G
   KOO21760.1 193 TLAYLSLGQLEERLGNLQAARRHYEAG 219
                  678999999***************988 PP

  == domain 4  score: 2.4 bits;  conditional E-value: 0.17
                  TSGGGTT-HHHHHHHHHHHTTS...S-HHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHHH CS
  Mad3_BUB1_I  56 dderYknDpRylklwlkyadlv...eepreifkflaskkiGtklalfYeewAellekkgrfkeAeevyelG 123
                    + Yk+D + l  w k+         +r +f+    +++ ++    Y+  A+l  ++g+++ A+++y  G
   KOO21760.1 258 ATQLYKDDAQLLVGWAKLEGEHgdvGTSRALFARAV-SSVAKHSPYAYQCAAALEVRCGEVQAARALYAAG 327
                  557799999999999988876633345677776654.4688888889999999999999999999999887 PP

>> Wzy_C_2  Virulence factor membrane-bound polymerase, C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.0       3.1   2.5e+03     134     171 ..      46      84 ..      26      89 .. 0.68
   2 ?    7.5   0.1    0.0044       3.6     117     169 ..      97     149 ..      88     160 .. 0.88
   3 ?    0.8   0.1      0.49     4e+02     151     177 ..     240     266 ..     232     274 .. 0.69
   4 ?    0.1   0.2      0.81   6.6e+02     145     171 ..     345     371 ..     309     374 .. 0.87

  Alignments for each domain:
  == domain 1  score: -1.8 bits;  conditional E-value: 3.1
     Wzy_C_2 134 rklihlsPepavie.rlilslallGdedeAeqilarara 171
                 r++i   P+ a+++  l+++   + +  eA+ ++++a++
  KOO21760.1  46 RRAIDACPTNALLRqALADLCRESRRYPEARSHYREAMK 84 
                 566666677666641467777777777788888777765 PP

  == domain 2  score: 7.5 bits;  conditional E-value: 0.0044
     Wzy_C_2 117 gllplspenlaaklalarklihlsPepavierlilslallGdedeAeqilara 169
                 g+++++  + aa  al+++ +++ P +++ + l ++l  +G  ++A+ +l+r 
  KOO21760.1  97 GRMEAQLGHSAAAAALYERGLKHAPNARLCHALGVLLDRQGAAEKARSVLKRG 149
                 66777778889999***********************************9986 PP

  == domain 3  score: 0.8 bits;  conditional E-value: 0.49
     Wzy_C_2 151 lslallGdedeAeqilararalfpeed 177
                    + l +++ A+ +++ra  l+ +++
  KOO21760.1 240 RIEQRLERPALALATYKRATQLYKDDA 266
                 555667777777777777777776665 PP

  == domain 4  score: 0.1 bits;  conditional E-value: 0.81
     Wzy_C_2 145 vierlilslallGdedeAeqilarara 171
                 +++ ++++ +  G   eA++  ++a+a
  KOO21760.1 345 LLHAWAVLEWRHGERREARRLFDEAEA 371
                 578899999**********99999987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (477 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       500  (0.0278878); expected 358.6 (0.02)
Passed bias filter:                      371  (0.0206927); expected 358.6 (0.02)
Passed Vit filter:                        51  (0.00284455); expected 17.9 (0.001)
Passed Fwd filter:                        25  (0.00139439); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              22  [number of targets reported over threshold]
# CPU time: 0.64u 0.26s 00:00:00.90 Elapsed: 00:00:00.49
# Mc/sec: 2920.79
//
Query:       KOO21761.1  [L=137]
Description: hypothetical protein Ctob_001075 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
     0.0013   19.4   0.2     0.0019   18.8   0.2    1.2  1  FYDLN_acid  Protein of unknown function (FYDLN_acid)
  ------ inclusion threshold ------
        1.5    9.2   4.8       0.41   11.1   1.0    2.2  2  GP68        Phage protein Gp68


Domain annotation for each model (and alignments):
>> FYDLN_acid  Protein of unknown function (FYDLN_acid)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.8   0.2   2.1e-07    0.0019      10      94 ..      34     130 ..      29     136 .. 0.64

  Alignments for each domain:
  == domain 1  score: 18.8 bits;  conditional E-value: 2.1e-07
  FYDLN_acid  10 riCpscgakFYDLnkdPivcpkcgeefepeevlksraaaaeaeeakkkkeeeedeedeeeeedvsdedadeeeee.............dddddvdlee 94 
                 r+ ++ +akF  L ++P   p       +++ l sra a++ +++  +++ee   e+ +++e++ +++ad+++++             ++d+ +  +e
  KOO21761.1  34 RLVQQAQAKFAELARSPQGAPVMMVLLIIATKLVSRADARAMDAE-AAAAEEPGVEEVTDAESAAEREADADADVgganvllpdaeqeAEDEGEGEGE 130
                 6678999***************99999999886665555444444.3333444444444556666677777766667888887766533333222222 PP

>> GP68  Phage protein Gp68
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   1.0   4.5e-05      0.41      31      62 ..      51      83 ..      38     107 .. 0.87
   2 ?   -3.8   0.1       1.9   1.7e+04      55      64 ..     116     125 ..     115     134 .. 0.78

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 4.5e-05
        GP68 31 kGaailkllklrGtrlvnqm.qraldaetaaar 62
                +Ga ++ +l +  t+lv +   ra+dae aaa 
  KOO21761.1 51 QGAPVMMVLLIIATKLVSRAdARAMDAEAAAAE 83
                69999************98736******99974 PP

  == domain 2  score: -3.8 bits;  conditional E-value: 1.9
        GP68  55 daetaaaraG 64 
                 dae++a+  G
  KOO21761.1 116 DAEQEAEDEG 125
                 7888887655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (137 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       465  (0.0259356); expected 358.6 (0.02)
Passed bias filter:                      236  (0.013163); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.39u 0.24s 00:00:00.63 Elapsed: 00:00:00.41
# Mc/sec: 1014.84
//
Query:       KOO21762.1  [L=479]
Description: outer membrane omp85 family protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.3e-36  126.7   0.0    1.6e-36  126.4   0.0    1.1  1  Bac_surface_Ag  Surface antigen


Domain annotation for each model (and alignments):
>> Bac_surface_Ag  Surface antigen
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  126.4   0.0   8.9e-41   1.6e-36       1     310 [.     117     462 ..     117     478 .. 0.88

  Alignments for each domain:
  == domain 1  score: 126.4 bits;  conditional E-value: 8.9e-41
                     STSSSS-EEEEEEEESS.SEEEEEEEEEESTSSTTS-EEEEEEEEEEGGGTBS.S-EEEEEEEEEEEEEE..ESSSEEEEEEEEEEEEEEES--- CS
  Bac_surface_Ag   1 NllGtGqslslsaslgs.yeqslnlsftePyflgdrvslglslfaresdsdesdsyrtksvgfsvslgrp..ltenyslslglsvqknkilkdss 92 
                     N lG+++ +++++++g+ +++s++ls + P++ g++ +l+ +++ +  +  + +s+ +k +g+s+s+ +        +  l ++++  +++   +
      KOO21762.1 117 NQLGRAEIFEAQMEMGQqKSSSFKLSAVRPRWMGQDAQLSADVSKQAISHIKHSSFVQKLLGASASVRVGsaGAAGGRHELTYALELRDVCRLTP 211
                     889*************99****************************9777777799999999887777775455667777777777788888999 PP

                     BHHHHHHHHSCS--EEEEEEEEEEEEEEEEEESS.....SSS-SSEEEEEEEEEEE-....TTSSS-EEEEEEEEEEEEESSTTSSSEEEEEEEE CS
  Bac_surface_Ag  93 sennrnvssasklqtgksltsslslslsydtrdd.....alfPtrGvllklrleftg..pllggdvsylkldakasyyvpltkekdlvlaarval 180
                     + +++++     +q+g+sl+ssls+s++++t d+     +l Pt+G ll+l  e++g  p++ gd +++k++++a++++pl+ + +l+++ +v +
      KOO21762.1 212 HTASWAI----LQQRGQSLKSSLSHSYARSTVDHplvdhPLVPTSGALLRLHTELAGlaPFPLGDARFVKSTFTAAAFTPLMANGRLTASVQVHA 302
                     9999987....6*******************87611111678**************9899*********************************** PP

                     EEEEESS.........SS-.--GGG-B-BSSTTSSTEE-TT-BS-EEE..........................EEEE--BSEEEEEEEEEEEE- CS
  Bac_surface_Ag 181 gyisgyg.........tkdelpfyerFyaGGsnsvRGfesgglgprde..........................sgdalGGdsyavaslElrfpl 240
                     g++ ++g            e ++++rF++GG +s+ Gf+++g+gprde                          s dalGGd + va++ l++ l
      KOO21762.1 303 GVLLPLGglfggllggP-TESHICDRFFCGGPGSLWGFRTRGVGPRDErhslaspaasaaeptaaapkkppsisSHDALGGDLLGVATASLSTTL 396
                     ****9999*******64.448************************************************************************** PP

                     SSS-GGTTEEEEEEEEEEEEE-TT--TTTTTTS--TTTS-EEEEEEEEEEEETTEEEEEEEEEEEE-STT CS
  Bac_surface_Ag 241 pflkkqnsvrlalFfDaGnvwdkegqspsssrsasstaeirasvGvgLrwqsPlGPlrfdyAiplkkedg 310
                     p +  ++    ++F+ +G + +    ++ +s  +   + +rasvG+g+ + +PlG+l++++   l+k  +
      KOO21762.1 397 PGNLAKSDGHAHIFASVGGLQGLAAVRAAGSV-V---PSLRASVGAGVALPTPLGRLELNMVHVLRKAPS 462
                     ***965669**********9776666666554.3...469*******************98777766665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (479 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       437  (0.0243739); expected 358.6 (0.02)
Passed bias filter:                      316  (0.0176251); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.50u 0.26s 00:00:00.76 Elapsed: 00:00:00.42
# Mc/sec: 3447.32
//
Query:       KOO21763.1  [L=110]
Description: hypothetical protein Ctob_001077 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (110 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       225  (0.0125495); expected 358.6 (0.02)
Passed bias filter:                      203  (0.0113224); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.25s 00:00:00.63 Elapsed: 00:00:00.42
# Mc/sec: 784.85
//
Query:       KOO21764.1  [L=1491]
Description: nxn protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    6.7e-35  120.5   0.0    1.6e-34  119.2   0.0    1.6  1  DUF3638        Protein of unknown function (DUF3638)
      2e-15   55.8   0.1    3.3e-14   52.0   0.1    2.5  2  DUF3645        Protein of unknown function (DUF3645)
  ------ inclusion threshold ------
      0.024   14.8   4.6        2.3    8.3   0.0    3.1  2  Mod_r          Modifier of rudimentary (Mod(r)) protein
      0.042   13.8   0.1        0.2   11.6   0.1    2.2  1  TetR_C_13      Tetracyclin repressor-like, C-terminal domain
      0.043   13.9   0.0       0.75    9.9   0.0    2.9  2  BACK           BTB And C-terminal Kelch
       0.11   12.6   7.3      0.031   14.3   0.9    3.1  2  DHR10          Designed helical repeat protein 10 domain
       0.12   12.3   5.5       0.45   10.5   0.1    3.8  4  Prefoldin_2    Prefoldin subunit
       0.17   10.8   1.3        4.1    6.3   0.0    2.3  2  MT             Microtubule-binding stalk of dynein motor
       0.28   11.2   5.1       0.38   10.8   2.7    2.5  2  Bap31_Bap29_C  Bap31/Bap29 cytoplasmic coiled-coil domain
        4.5    7.1   7.4       0.46   10.3   0.9    2.6  3  SPAM           Salmonella surface presentation of antigen gen


Domain annotation for each model (and alignments):
>> DUF3638  Protein of unknown function (DUF3638)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  119.2   0.0   9.1e-38   1.6e-34       8     218 ..     105     322 ..      99     329 .. 0.89

  Alignments for each domain:
  == domain 1  score: 119.2 bits;  conditional E-value: 9.1e-38
     DUF3638   8 ehpewLlleiesniliReeQaevAkemisps.sgensvlQLnmGeGKssvIvPivaaaladgkkLvrvivlkpllkqmaqlLvskLggllnrrvyhlpf 105
                   p+ Ll+e  +n+++Re+Q++  +e +++   g+  v Q+ mG GK++v+ P++a++l dg++Lv  +++ +ll+q+  +L +++++++ +rv+ l f
  KOO21764.1 105 YDPRFLLFEFTHNLVLREAQVALVREFVDAVrGGRPLVKQMLMGGGKTTVVGPMLALMLGDGRTLVVQTMPPALLEQSKATLRATFSSIVRKRVFTLSF 203
                 57999**********************998725677899************************************************************ PP

     DUF3638 106 sRslklteekaeairklleeclkeggvllvqpehilSfkLmglekllskkeek..........vakelletqkwldessrdilDEsDells.vkfeLiY 193
                 +Rs  l+ +++e+++    + ++++gv+l++ + i S++L+ lek+    e +            ++l ++ k++++ +  i+DE+D ll+  k eL +
  KOO21764.1 204 ERSSALRWSTVEKLQ----SAMRNNGVVLCTASTIKSLQLKLLEKMEMMVEPNgqlvdrsiehDVRALARVIKLFKSGC-LIMDEVDLLLHpLKAELNF 297
                 ******999998876....56789*******************998775554467999997766677888888886655.6*********9459***** PP

     DUF3638 194 tvGsqepvegspdRwkvvqevLslv 218
                 ++G+++p+++sp+Rw+++ + L+ v
  KOO21764.1 298 PIGAKHPLDFSPERWTCAIHCLDAV 322
                 ******************9999987 PP

>> DUF3645  Protein of unknown function (DUF3645)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.9   0.0      0.17   3.1e+02       4      12 ..     327     335 ..     325     338 .. 0.88
   2 !   52.0   0.1   1.8e-17   3.3e-14       2      33 .]     520     551 ..     519     551 .. 0.97

  Alignments for each domain:
  == domain 1  score: 0.9 bits;  conditional E-value: 0.17
     DUF3645   4 RtllAVPYr 12 
                 R+ +AVP++
  KOO21764.1 327 RQSMAVPFH 335
                 899*****6 PP

  == domain 2  score: 52.0 bits;  conditional E-value: 1.8e-17
     DUF3645   2 psRtllAVPYrAKDvPserSEFsHpDvvIvLT 33 
                 +sR +lA+P+++KDvPs+ SEF+HpD++I+LT
  KOO21764.1 520 RSRFKLAIPFVGKDVPSRASEFAHPDIIIGLT 551
                 8999***************************9 PP

>> Mod_r  Modifier of rudimentary (Mod(r)) protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.5   1.7    0.0097        17      46      91 ..    1007    1052 ..     998    1096 .. 0.84
   2 ?    8.3   0.0    0.0013       2.3      56     101 ..    1421    1472 ..    1413    1480 .. 0.77

  Alignments for each domain:
  == domain 1  score: 5.5 bits;  conditional E-value: 0.0097
       Mod_r   46 aeknlslepeleelrselqekleelkelekefeekeqeldellqkf 91  
                  ++++ ++e+e+ e+r++  +++ +l+el+ +++ +e++l +++ k+
  KOO21764.1 1007 LKAKAKKEKEFGEEREQAHKERGKLHELMHALRPLEKQLGHISAKL 1052
                  56778899*******************************9988554 PP

  == domain 2  score: 8.3 bits;  conditional E-value: 0.0013
       Mod_r   56 leelrselqekleelkelekefeekeqeldell......qkfspdallarLq 101 
                  + el+ el++k +++++l+ke++  ++elde+l      +  sp  +++ ++
  KOO21764.1 1421 YHELSTELTAKKKQYDALKKELQVAQKELDEVLdrdeppDGISPTLIKSVMK 1472
                  678999**************************97554444444444444444 PP

>> TetR_C_13  Tetracyclin repressor-like, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.1   0.00011       0.2      32      98 ..     877     944 ..     865     952 .. 0.71

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 0.00011
                 HHTGGGS-TTHHHHHHHHHHH.HHHHHHHHHHHHHCTTSS-TTS-HHHHHHHHHHHHHHHHHHHHHHT CS
   TetR_C_13  32 gqEvaalpesfrerleevled.wqkrvaacleeaqeageiaadadaeelaeffwigWeGAvlRakler 98 
                 + E  + ++ ++++l ++  +  ++++ a  +  +  +e+aa+  +++l e+f+++ eGAv Rakl  
  KOO21764.1 877 KSERVQFDQLCHQNLCNIWRQrAHEQLLAGHTLFRVPKEVAASYVHQALGEAFLSNREGAVGRAKLDG 944
                 555556666666666655432023333344444566789999999********************975 PP

>> BACK  BTB And C-terminal Kelch
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   0.0       0.8   1.4e+03      22      46 ..      13      37 ..       6      39 .. 0.88
   2 ?    9.9   0.0   0.00042      0.75      36      74 ..    1318    1354 ..    1302    1369 .. 0.84

  Alignments for each domain:
  == domain 1  score: -0.6 bits;  conditional E-value: 0.8
        BACK 22 efilknfeevlkseeFleLskeqll 46
                 ++++ + +++k  +F+e+++++l+
  KOO21764.1 13 AYVREALPQLMKRANFVEVDLKSLQ 37
                799999*************999986 PP

  == domain 2  score: 9.9 bits;  conditional E-value: 0.00042
        BACK   36 eFleLskeqllellssdeLnvesEeevfeavlkWvkhde 74  
                  + ++  ++ ll +l+sd L  ++E++vf+a+ +W++  +
  KOO21764.1 1318 DLFKAALTALLLMLNSDAL--AKESDVFKAAASWMNPMK 1354
                  556666788999*******..9************98655 PP

>> DHR10  Designed helical repeat protein 10 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   0.9   1.7e-05     0.031      31      98 ..     989    1056 ..     987    1061 .. 0.95
   2 ?   -0.6   0.7      0.75   1.3e+03      72      95 ..    1427    1450 ..    1418    1457 .. 0.42

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 1.7e-05
       DHR10   31 vekdlrsciklleeieaelakleeakkklkelrdaleekeielrelerkeerlqrqlenaeeklerlr 98  
                  ++++ r +++++  +++ l++  + +k+  e r++ ++ + +l+el +  + l++ql +   kl++lr
  KOO21764.1  989 ITREARDLFEIAYACSSSLKAKAKKEKEFGEEREQAHKERGKLHELMHALRPLEKQLGHISAKLAKLR 1056
                  67889999**********************************************************98 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 0.75
       DHR10   72 elrelerkeerlqrqlenaeekle 95  
                  el   +++ + l++ l+ a+++l+
  KOO21764.1 1427 ELTAKKKQYDALKKELQVAQKELD 1450
                  333333333333333333333332 PP

>> Prefoldin_2  Prefoldin subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.4   0.0      0.62   1.1e+03      61      85 ..      16      40 ..      14      46 .. 0.85
   2 ?   -1.4   0.0       1.2   2.2e+03      74      96 ..    1034    1056 ..    1019    1065 .. 0.68
   3 ?    0.8   0.1      0.26   4.6e+02      22      44 ..    1078    1100 ..    1058    1105 .. 0.84
   4 ?   10.5   0.1   0.00025      0.45      15      63 ..    1426    1474 ..    1417    1477 .. 0.86

  Alignments for each domain:
  == domain 1  score: -0.4 bits;  conditional E-value: 0.62
                 HHHHHHHHHHHHHHHHHHHHHHHHH CS
  Prefoldin_2 61 eevkeeLeerketlekeiktlekql 85
                  e++++L +r++++e  +k+l+  +
   KOO21764.1 16 REALPQLMKRANFVEVDLKSLQPHE 40
                 6899***************998655 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 1.2
                   HHHHHHHHHHHHHHHHHHHHHHH CS
  Prefoldin_2   74 lekeiktlekqleklekeleelk 96  
                   l   ++ lekql ++ ++l++l+
   KOO21764.1 1034 LMHALRPLEKQLGHISAKLAKLR 1056
                   44455667777777777777765 PP

  == domain 3  score: 0.8 bits;  conditional E-value: 0.26
                   HHHHHHHHHHHHHHHHHHHS-TT CS
  Prefoldin_2   22 kqletqlkelelvleelellded 44  
                   + l++ l+ele+++++l +l+e+
   KOO21764.1 1078 AALQQALTELETAKTALGQLPET 1100
                   56899999999999999999997 PP

  == domain 4  score: 10.5 bits;  conditional E-value: 0.00025
                   HHHHHHHHHHHHHHHHHHHHHHHHHHS-TT--EEEEETTEEEEE-HHHH CS
  Prefoldin_2   15 qqlaqqikqletqlkelelvleelelldedtkvyklvGdvlvkqdkeev 63  
                   ++l +++kq+++ +kel+ +++el+++ + ++ +  + ++l+k   + +
   KOO21764.1 1426 TELTAKKKQYDALKKELQVAQKELDEVLDRDEPPDGISPTLIKSVMKAA 1474
                   678999********************99999999999999999766555 PP

>> MT  Microtubule-binding stalk of dynein motor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.8   0.3     0.027        48      77     131 ..    1073    1127 ..    1050    1138 .. 0.86
   2 ?    6.3   0.0    0.0023       4.1     190     239 ..    1402    1451 ..    1383    1460 .. 0.89

  Alignments for each domain:
  == domain 1  score: 2.8 bits;  conditional E-value: 0.027
          MT   77 qkdceedlakaepallaaqealntlnktnltelksfgsppdavvnvaaavmvlla 131 
                  +++ e  l +a   l +a+ al  l  t l e+++  +p d +     av vll 
  KOO21764.1 1073 ARATEAALQQALTELETAKTALGQLPETALEEMRTTDTPSDPLRAAVEAVAVLLD 1127
                  57788899999999*************************9999998889988875 PP

  == domain 2  score: 6.3 bits;  conditional E-value: 0.0023
          MT  190 kskslaaaglcswvinivrfyevycdvepkrqalekanaelaaaqeklaa 239 
                  ++ s  +a lc w++    ++e+  ++  k++  +  ++el+ aq+ l  
  KOO21764.1 1402 RAGSQLCAYLCEWIVAAAGYHELSTELTAKKKQYDALKKELQVAQKELDE 1451
                  566788899************************************99876 PP

>> Bap31_Bap29_C  Bap31/Bap29 cytoplasmic coiled-coil domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.0       2.1   3.7e+03      23      37 ..     450     464 ..     449     473 .. 0.84
   2 ?   10.8   2.7   0.00021      0.38       5      36 ..    1423    1454 ..    1420    1460 .. 0.93

  Alignments for each domain:
  == domain 1  score: -2.0 bits;  conditional E-value: 2.1
  Bap31_Bap29_C  23 QaeglakEYDrLade 37 
                    Q+ + a+++ rL+  
     KOO21764.1 450 QSASSARAFERLLAY 464
                    99**********975 PP

  == domain 2  score: 10.8 bits;  conditional E-value: 0.00021
  Bap31_Bap29_C    5 kLkkeLkkkkkDlealKkQaeglakEYDrLad 36  
                     +L +eL +kkk ++alKk  +  +kE D ++d
     KOO21764.1 1423 ELSTELTAKKKQYDALKKELQVAQKELDEVLD 1454
                     899*************************9998 PP

>> SPAM  Salmonella surface presentation of antigen gene type M protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.0       1.1     2e+03      48     118 ..     577     603 ..     559     613 .. 0.54
   2 ?   10.3   0.9   0.00026      0.46      15      59 ..    1002    1046 ..     998    1056 .. 0.92
   3 ?   -2.9   0.2       2.9   5.3e+03      30      58 ..    1424    1453 ..    1412    1457 .. 0.52

  Alignments for each domain:
  == domain 1  score: -1.5 bits;  conditional E-value: 1.1
        SPAM  48 LdlqrpegksldreelyallrkqaivrrqlkeLeLqlvaiqekrselqkekeelskkskyWLrkedkyrrW 118
                 ++                                             ++  +e ++k+   Lrk     +W
  KOO21764.1 577 FEK--------------------------------------------EQSNDEQMNKLYELLRKLPACLHW 603
                 222............................................233345555555556665555555 PP

  == domain 2  score: 10.3 bits;  conditional E-value: 0.00026
        SPAM   15 rCeaallqlkdeereldkeeeaieeqragLkeLLdlqrpegksld 59  
                   C + l   +++e+e+ +e+e+ +++r +L+eL++++rp +k+l 
  KOO21764.1 1002 ACSSSLKAKAKKEKEFGEEREQAHKERGKLHELMHALRPLEKQLG 1046
                  599999999********************************9985 PP

  == domain 3  score: -2.9 bits;  conditional E-value: 2.9
        SPAM   30 ldkeeeaieeqragLkeLLd.lqrpegksl 58  
                  l  e+ a ++q   Lk+ L+ +q+  ++ l
  KOO21764.1 1424 LSTELTAKKKQYDALKKELQvAQKELDEVL 1453
                  555555555555555544441333334444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1491 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       854  (0.0476323); expected 358.6 (0.02)
Passed bias filter:                      579  (0.032294); expected 358.6 (0.02)
Passed Vit filter:                        56  (0.00312343); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.96u 0.29s 00:00:01.25 Elapsed: 00:00:00.45
# Mc/sec: 9856.06
//
Query:       KOO21765.1  [L=732]
Description: ef hand domain-containing protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (732 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       499  (0.027832); expected 358.6 (0.02)
Passed bias filter:                      357  (0.0199119); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.61u 0.25s 00:00:00.86 Elapsed: 00:00:00.41
# Mc/sec: 5360.16
//
Query:       KOO21766.1  [L=590]
Description: hypothetical protein Ctob_001073 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    0.00014   22.1   0.0    0.00027   21.1   0.0    1.4  1  Laminin_G_3  Concanavalin A-like lectin/glucanases superfamil


Domain annotation for each model (and alignments):
>> Laminin_G_3  Concanavalin A-like lectin/glucanases superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.1   0.0   1.5e-08   0.00027      55     114 ..     138     198 ..     105     211 .. 0.79

  Alignments for each domain:
  == domain 1  score: 21.1 bits;  conditional E-value: 1.5e-08
  Laminin_G_3  55 grlrfsvnagngaeesvt.sgasvpageWtHvavtydggtlrlYvNGvevgsatltgglls 114
                  ++++++ n+g ga  +    +a+v+a++W  vavt   g+l+ YvNG + ++ +l ++ l 
   KOO21766.1 138 DQVQVYKNGGVGALGQMGsQDATVRAERWAWVAVTRKKGELKTYVNGRLCAEIKLESAKLL 198
                  46777777776655554437889****************************9999887554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (590 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       485  (0.0270511); expected 358.6 (0.02)
Passed bias filter:                      273  (0.0152267); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.51u 0.24s 00:00:00.75 Elapsed: 00:00:00.40
# Mc/sec: 4428.01
//
Query:       KOO21767.1  [L=476]
Description: DNAj-like subfamily c member 3 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    8.1e-25   86.7   1.9    8.1e-25   86.7   1.9    2.0  2  DnaJ      DnaJ domain
    2.2e-12   46.1   7.7    9.6e-05   22.2   0.0    5.3  5  TPR_2     Tetratricopeptide repeat
    2.8e-11   42.7   5.1      7e-05   22.5   0.0    5.1  5  TPR_1     Tetratricopeptide repeat
    1.7e-09   38.1   0.5     0.0065   17.0   0.0    3.7  3  TPR_19    Tetratricopeptide repeat
    3.3e-08   33.7   6.5      0.041   14.7   0.0    5.0  4  TPR_14    Tetratricopeptide repeat
    1.3e-05   24.8   0.1       0.58    9.9   0.0    3.6  3  TPR_11    TPR repeat
    1.6e-05   25.1   7.8      0.074   13.4   0.5    4.3  4  TPR_12    Tetratricopeptide repeat
    6.3e-05   23.5   1.0       0.51   11.0   0.0    4.2  5  TPR_16    Tetratricopeptide repeat
    0.00012   21.4   0.7        0.1   11.8   0.0    2.7  2  TPR_15    Tetratricopeptide repeat
    0.00029   20.8   5.9       0.68   10.3   0.0    4.7  4  TPR_8     Tetratricopeptide repeat
     0.0015   18.7   3.7     0.0027   17.9   0.2    2.9  3  ANAPC3    Anaphase-promoting complex, cyclosome, subunit 3
  ------ inclusion threshold ------
      0.032   14.3   5.8         31    4.9   0.0    5.1  5  TPR_7     Tetratricopeptide repeat
       0.25   11.5   4.4       0.67   10.1   0.2    3.0  3  TPR_9     Tetratricopeptide repeat
       0.46   11.2   4.5        5.6    7.8   0.0    4.2  3  TPR_6     Tetratricopeptide repeat
        5.2    7.1   6.5        2.7    8.1   3.0    2.2  2  DUF2116   Uncharacterized protein containing a Zn-ribbon (DUF


Domain annotation for each model (and alignments):
>> DnaJ  DnaJ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.2       4.3   5.1e+03      23      47 ..     219     242 ..     211     250 .. 0.55
   2 !   86.7   1.9   6.8e-28   8.1e-25       1      63 []     380     442 ..     380     442 .. 0.99

  Alignments for each domain:
  == domain 1  score: -2.3 bits;  conditional E-value: 4.3
                 HHHHHHSTTTSCCHHHHHHHHHHHH CS
        DnaJ  23 klalkyHPDknpkdpeaeekFkein 47 
                 + alk+ P+   k++   ++ k+++
  KOO21767.1 219 REALKLDPEHT-KCKADYKHAKKVA 242
                 56788888755.3333333333333 PP

  == domain 2  score: 86.7 bits;  conditional E-value: 6.8e-28
                 HHHHHHTSSTTG-HHHHHHHHHHHHHHHSTTTSCCHHHHHHHHHHHHHHHHHHTSHHHHHHHH CS
        DnaJ   1 dyYeiLgvskdasedeIkkaYrklalkyHPDknpkdpeaeekFkeineAyevLsdpekRkqYD 63 
                 dyY++L+v++ as+ eIk+aY+kla+++HPDkn++d+eae kFk i+ AyevLsd++ Rk+YD
  KOO21767.1 380 DYYKLLNVTRGASAREIKRAYHKLAVEWHPDKNKGDEEAEIKFKAIALAYEVLSDEDLRKKYD 442
                 8*************************************************************9 PP

>> TPR_2  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.2   0.0     8e-08   9.6e-05       4      34 .]     198     228 ..     196     228 .. 0.95
   2 !   12.6   0.6   9.7e-05      0.12      11      34 .]     265     288 ..     263     288 .. 0.90
   3 ?    1.6   0.0      0.31   3.7e+02       4      26 ..     295     317 ..     292     318 .. 0.86
   4 !    9.2   0.0    0.0012       1.4       9      33 ..     334     358 ..     333     359 .. 0.90
   5 ?   -1.1   0.1       2.3   2.7e+03      18      27 ..     367     376 ..     360     380 .. 0.65

  Alignments for each domain:
  == domain 1  score: 22.2 bits;  conditional E-value: 8e-08
       TPR_2   4 lynlGlayyklgdyeeAleafekAleldPnn 34 
                 ly +G+  + +g+ e Al++f++Al+ldP++
  KOO21767.1 198 LYKRGKQFWVMGNTELALRHFREALKLDPEH 228
                 899**************************86 PP

  == domain 2  score: 12.6 bits;  conditional E-value: 9.7e-05
       TPR_2  11 yyklgdyeeAleafekAleldPnn 34 
                 +++  +yeeA+ ++++Al+l+P n
  KOO21767.1 265 LEREEQYEEARVLLDEALALAPPN 288
                 57889*****************65 PP

  == domain 3  score: 1.6 bits;  conditional E-value: 0.31
       TPR_2   4 lynlGlayyklgdyeeAleafek 26 
                 +  l  + ++l + e+Al+ +e+
  KOO21767.1 295 YRDLCTCNIRLRRTEDALKVCEQ 317
                 777888999**********9986 PP

  == domain 4  score: 9.2 bits;  conditional E-value: 0.0012
       TPR_2   9 layyklgdyeeAleafekAleldPn 33 
                 +a++ + ++eeA++ f+++le d++
  KOO21767.1 334 EALMLAERFEEAIAGFKQVLEMDEH 358
                 589999***************9975 PP

  == domain 5  score: -1.1 bits;  conditional E-value: 2.3
       TPR_2  18 eeAleafekA 27 
                 e+A+++f+++
  KOO21767.1 367 EQAEKLFKRS 376
                 5677777665 PP

>> TPR_1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.5   0.0   5.9e-08     7e-05       4      34 .]     198     228 ..     196     228 .. 0.94
   2 !    7.1   0.3    0.0041       4.9      14      32 ..     268     286 ..     265     288 .. 0.89
   3 ?    0.5   0.0      0.52   6.2e+02       7      30 ..     298     321 ..     294     324 .. 0.78
   4 !    9.7   0.0   0.00065      0.78      10      33 ..     335     358 ..     334     359 .. 0.90
   5 ?   -0.7   0.1       1.2   1.4e+03      18      31 ..     367     380 ..     366     380 .. 0.85

  Alignments for each domain:
  == domain 1  score: 22.5 bits;  conditional E-value: 5.9e-08
                 HHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH CS
       TPR_1   4 lynlGnayfklgkydeAleyyekALelnPnn 34 
                 ly +G  +  +g+ + Al ++++AL+l+P++
  KOO21767.1 198 LYKRGKQFWVMGNTELALRHFREALKLDPEH 228
                 899**************************86 PP

  == domain 2  score: 7.1 bits;  conditional E-value: 0.0041
                 TT-HHHHHHHHHHHHHHST CS
       TPR_1  14 lgkydeAleyyekALelnP 32 
                  ++y+eA    ++AL l P
  KOO21767.1 268 EEQYEEARVLLDEALALAP 286
                 689**************99 PP

  == domain 3  score: 0.5 bits;  conditional E-value: 0.52
                 HHHHHHHTT-HHHHHHHHHHHHHH CS
       TPR_1   7 lGnayfklgkydeAleyyekALel 30 
                 l  +  +l + ++Al+ +e+  ++
  KOO21767.1 298 LCTCNIRLRRTEDALKVCEQHTQH 321
                 55677789999*****99986665 PP

  == domain 4  score: 9.7 bits;  conditional E-value: 0.00065
                 HHHHTT-HHHHHHHHHHHHHHSTT CS
       TPR_1  10 ayfklgkydeAleyyekALelnPn 33 
                 a++  ++++eA++ ++++Le +++
  KOO21767.1 335 ALMLAERFEEAIAGFKQVLEMDEH 358
                 678899***************986 PP

  == domain 5  score: -0.7 bits;  conditional E-value: 1.2
                 HHHHHHHHHHHHHS CS
       TPR_1  18 deAleyyekALeln 31 
                 ++A++ +++  e++
  KOO21767.1 367 EQAEKLFKRSKEVD 380
                 89******998875 PP

>> TPR_19  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.2   0.0     0.012        14       4      30 ..     208     234 ..     206     244 .. 0.88
   2 !   17.0   0.0   5.4e-06    0.0065       4      55 ..     268     322 ..     265     331 .. 0.89
   3 !   10.7   0.1    0.0005       0.6       1      33 [.     336     370 ..     336     378 .. 0.86

  Alignments for each domain:
  == domain 1  score: 6.2 bits;  conditional E-value: 0.012
      TPR_19   4 egdyaeAlalleqalqedpknaearll 30 
                 +g+ + Al+++++al+ dp++   +++
  KOO21767.1 208 MGNTELALRHFREALKLDPEHTKCKAD 234
                 689999**************9877665 PP

  == domain 2  score: 17.0 bits;  conditional E-value: 5.4e-06
      TPR_19   4 egdyaeAlalleqalqedpk...naearllLAeallalgqldeAealLdalpeed 55 
                 e++y+eA  ll +al+ +p     + +  +L+ + + l ++++A +++++  ++d
  KOO21767.1 268 EEQYEEARVLLDEALALAPPnvyRSTLYRDLCTCNIRLRRTEDALKVCEQHTQHD 322
                 78***************999887888888******************99876665 PP

  == domain 3  score: 10.7 bits;  conditional E-value: 0.0005
      TPR_19   1 llaegdyaeAlalleqalqedpknaearllL..Ae 33 
                 l+ +++++eA+a ++q+l+ d ++++ar +L  Ae
  KOO21767.1 336 LMLAERFEEAIAGFKQVLEMDEHSQDARKGLeqAE 370
                 577899**********************9995555 PP

>> TPR_14  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   0.0   3.4e-05     0.041       3      34 ..     197     228 ..     195     233 .. 0.92
   2 !   10.2   0.8   0.00093       1.1       9      32 ..     263     286 ..     259     299 .. 0.88
   3 ?    1.6   0.0      0.55   6.6e+02      12      31 ..     303     322 ..     292     331 .. 0.80
   4 ?    6.2   0.2     0.019        23       9      39 ..     334     364 ..     326     370 .. 0.87

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 3.4e-05
      TPR_14   3 allalaeallalGdpdeAiallrralalaPdd 34 
                  l+++++ ++  G+++ A++++r+al+l+P++
  KOO21767.1 197 QLYKRGKQFWVMGNTELALRHFREALKLDPEH 228
                 5899**************************87 PP

  == domain 2  score: 10.2 bits;  conditional E-value: 0.00093
      TPR_14   9 eallalGdpdeAiallrralalaP 32 
                 + l++ ++++eA+ ll++alalaP
  KOO21767.1 263 KQLEREEQYEEARVLLDEALALAP 286
                 6899******************99 PP

  == domain 3  score: 1.6 bits;  conditional E-value: 0.55
      TPR_14  12 lalGdpdeAiallrralala 31 
                  +l+++++A++++++  +++
  KOO21767.1 303 IRLRRTEDALKVCEQHTQHD 322
                 6899*********9987765 PP

  == domain 4  score: 6.2 bits;  conditional E-value: 0.019
      TPR_14   9 eallalGdpdeAiallrralalaPddaeawl 39 
                 eal+ +++++eAia ++++l+ +  +++a+ 
  KOO21767.1 334 EALMLAERFEEAIAGFKQVLEMDEHSQDARK 364
                 79999****************9999999886 PP

>> TPR_11  TPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.9   0.0   0.00049      0.58       7      26 ..     208     227 ..     198     228 .. 0.90
   2 !    5.7   0.2    0.0098        12       8      27 ..     269     288 ..     267     290 .. 0.88
   3 ?    4.9   0.0     0.018        22       7      26 ..     339     358 ..     334     366 .. 0.81

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.00049
      TPR_11   7 qGkyeeAieaYkkAlkldPd 26 
                  G+ e A+ ++++AlkldP+
  KOO21767.1 208 MGNTELALRHFREALKLDPE 227
                 5999***************6 PP

  == domain 2  score: 5.7 bits;  conditional E-value: 0.0098
      TPR_11   8 GkyeeAieaYkkAlkldPdn 27 
                  +yeeA   + +Al+l P n
  KOO21767.1 269 EQYEEARVLLDEALALAPPN 288
                 59**************9966 PP

  == domain 3  score: 4.9 bits;  conditional E-value: 0.018
      TPR_11   7 qGkyeeAieaYkkAlkldPd 26 
                   ++eeAi+ +k+ l+ d+ 
  KOO21767.1 339 AERFEEAIAGFKQVLEMDEH 358
                 5689************9975 PP

>> TPR_12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.7   0.0    0.0072       8.6      58      74 ..     208     224 ..     194     229 .. 0.67
   2 !   13.4   0.5   6.2e-05     0.074      14      71 ..     266     318 ..     264     323 .. 0.90
   3 ?    5.6   0.1     0.017        20      11      34 ..     334     357 ..     325     364 .. 0.65
   4 ?    0.4   0.0       0.7   8.3e+02      19      31 ..     366     378 ..     358     403 .. 0.67

  Alignments for each domain:
  == domain 1  score: 6.7 bits;  conditional E-value: 0.0072
      TPR_12  58 lgryeeAlelleealai 74 
                 +g++e Al++++eal++
  KOO21767.1 208 MGNTELALRHFREALKL 224
                 45666666666666655 PP

  == domain 2  score: 13.4 bits;  conditional E-value: 6.2e-05
      TPR_12  14 rrlgrydeAlellekaleiarrllGpdhpltattlrnLgrlyralgryeeAlelleea 71 
                  r ++y+eA+ ll++al++a     p + + +t +r+L ++  +l r+e+Al+  e+ 
  KOO21767.1 266 EREEQYEEARVLLDEALALA-----PPNVYRSTLYRDLCTCNIRLRRTEDALKVCEQH 318
                 6889****************.....9999**********************9876665 PP

  == domain 3  score: 5.6 bits;  conditional E-value: 0.017
      TPR_12  11 avlrrlgrydeAlellekaleiar 34 
                 ++l+ ++r++eA++ ++++le+ +
  KOO21767.1 334 EALMLAERFEEAIAGFKQVLEMDE 357
                 455666666666666666666554 PP

  == domain 4  score: 0.4 bits;  conditional E-value: 0.7
      TPR_12  19 ydeAlellekale 31 
                 +++A++l++++ e
  KOO21767.1 366 LEQAEKLFKRSKE 378
                 3444444444444 PP

>> TPR_16  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.0   0.0   0.00042      0.51       1      33 [.     199     228 ..     199     232 .. 0.89
   2 ?    3.0   0.4      0.14   1.7e+02      46      66 ..     267     287 ..     265     289 .. 0.75
   3 ?    2.0   0.0      0.28   3.3e+02      11      60 ..     306     352 ..     302     360 .. 0.59
   4 ?    2.9   0.1      0.15   1.8e+02      10      37 ..     339     363 ..     330     378 .. 0.74
   5 ?    0.5   0.0      0.83   9.9e+02      13      35 ..     359     380 ..     356     388 .. 0.72

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00042
      TPR_16   1 lalaraalragdyddAaaaleaalkrdpssPda 33 
                 +++++ ++  g+ + A++ +++alk+d   P++
  KOO21767.1 199 YKRGKQFWVMGNTELALRHFREALKLD---PEH 228
                 67888899*******************...765 PP

  == domain 2  score: 3.0 bits;  conditional E-value: 0.14
      TPR_16  46 rqgrlaeAaalyraalraapd 66 
                 r   ++eA+ l+++al+ ap 
  KOO21767.1 267 REEQYEEARVLLDEALALAPP 287
                 566788888888888888886 PP

  == domain 3  score: 2.0 bits;  conditional E-value: 0.28
      TPR_16  11 gdyddAaaaleaalkrdpssPdaaeAllllgdaalrqgrlaeAaalyraa 60 
                 ++ +dA+++ e+ +  d   +    ++ll  +a+  + r++eA+a ++  
  KOO21767.1 306 RRTEDALKVCEQHTQHD---SGSMSSRLLHSEALMLAERFEEAIAGFKQV 352
                 56666666666666666...666666666666666666666666544443 PP

  == domain 4  score: 2.9 bits;  conditional E-value: 0.15
      TPR_16  10 agdyddAaaaleaalkrdpssPdaaeAl 37 
                 a ++++A+a ++++l++d       +A+
  KOO21767.1 339 AERFEEAIAGFKQVLEMD---EHSQDAR 363
                 789999999999999999...4444555 PP

  == domain 5  score: 0.5 bits;  conditional E-value: 0.83
      TPR_16  13 yddAaaaleaalkrdpssPdaae 35 
                  +dA++ le+a k++++s   ++
  KOO21767.1 359 SQDARKGLEQAEKLFKRSK-EVD 380
                 6889999999999998776.354 PP

>> TPR_15  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.5   0.1    0.0018       2.1     154     186 ..     203     235 ..     168     238 .. 0.82
   2 !   11.8   0.0   8.5e-05       0.1     199     274 ..     274     352 ..     264     358 .. 0.82

  Alignments for each domain:
  == domain 1  score: 7.5 bits;  conditional E-value: 0.0018
      TPR_15 154 elyrqegqtdaAlrdyreAlalapdsselraal 186
                 +     g+t+ Alr +reAl+l+p+ ++ +a +
  KOO21767.1 203 KQFWVMGNTELALRHFREALKLDPEHTKCKADY 235
                 55555799******************9999876 PP

  == domain 2  score: 11.8 bits;  conditional E-value: 8.5e-05
      TPR_15 199 Lrellkawkara...esdasLwgplaaAlllLgrpkkALeylrkqakenrkdplwllaYADaleqagradeAwrlRrqv 274
                 +r ll +  a a      ++L+  l +   +L r++ AL+  +++++  + +++ +l   +al  a r++eA +  +qv
  KOO21767.1 274 ARVLLDEALALAppnVYRSTLYRDLCTCNIRLRRTEDALKVCEQHTQHDSGSMSSRLLHSEALMLAERFEEAIAGFKQV 352
                 55555555555555455688999999999*******************************************8766666 PP

>> TPR_8  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.3   0.0   0.00057      0.68      14      34 .]     208     228 ..     198     228 .. 0.89
   2 ?    4.3   0.1     0.049        58      13      33 ..     267     287 ..     265     288 .. 0.88
   3 ?    6.0   0.0     0.013        16       9      32 ..     334     357 ..     328     359 .. 0.84
   4 ?   -2.9   0.1       9.6   1.1e+04      18      29 ..     367     378 ..     366     380 .. 0.76

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.00057
                 TT-HHHHHHHHHHHHHHHHH. CS
       TPR_8  14 lgdyeeAkeyyekaleldpdn 34 
                 +g+ e A   +++al+ldp++
  KOO21767.1 208 MGNTELALRHFREALKLDPEH 228
                 8******************86 PP

  == domain 2  score: 4.3 bits;  conditional E-value: 0.049
                 HTT-HHHHHHHHHHHHHHHHH CS
       TPR_8  13 klgdyeeAkeyyekaleldpd 33 
                   ++yeeA   + +al l+p 
  KOO21767.1 267 REEQYEEARVLLDEALALAPP 287
                 5689**************995 PP

  == domain 3  score: 6.0 bits;  conditional E-value: 0.013
                 HHHHHTT-HHHHHHHHHHHHHHHH CS
       TPR_8   9 siylklgdyeeAkeyyekaleldp 32 
                  +++  +++eeA++ ++++le+d+
  KOO21767.1 334 EALMLAERFEEAIAGFKQVLEMDE 357
                 56777789**************97 PP

  == domain 4  score: -2.9 bits;  conditional E-value: 9.6
                 HHHHHHHHHHHH CS
       TPR_8  18 eeAkeyyekale 29 
                 e+A++ +++  e
  KOO21767.1 367 EQAEKLFKRSKE 378
                 899999998766 PP

>> ANAPC3  Anaphase-promoting complex, cyclosome, subunit 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.1   0.1       0.8   9.5e+02      36      58 ..     208     231 ..     186     248 .. 0.74
   2 !   17.9   0.2   2.3e-06    0.0027       3      79 ..     269     349 ..     267     352 .. 0.89
   3 ?   -1.8   0.0       3.1   3.7e+03      36      51 ..     393     408 ..     366     416 .. 0.72

  Alignments for each domain:
  == domain 1  score: 0.1 bits;  conditional E-value: 0.8
                 TT-HHHHHHHHHCT.SHHHC-HHH CS
      ANAPC3  36 ngqykrAyellrka.klnskslgc 58 
                 +g+ + A++ +r+a kl++++ +c
  KOO21767.1 208 MGNTELALRHFREAlKLDPEHTKC 231
                 567777888888888888888876 PP

  == domain 2  score: 17.9 bits;  conditional E-value: 2.3e-06
                 T-HHHHHHHHHHHH.HHH--HHHHHHH...HHHHHHTT-HHHHHHHHHCT.SHHHC-HHHHHHHHHHHHHTT-HHHHHHHH CS
      ANAPC3   3 nnyknAiflaerllaaetespedayll...AlclylngqykrAyellrka.klnskslgcrylfAqcllkLkkyeeAiaaL 79 
                 ++y++A  l++ +la  + + + + l+   + c  ++ + + A+++++++ + +s s+ +r+l+ ++l   +++eeAia +
  KOO21767.1 269 EQYEEARVLLDEALALAPPNVYRSTLYrdlCTCNIRLRRTEDALKVCEQHtQHDSGSMSSRLLHSEALMLAERFEEAIAGF 349
                 799***********9777777776665566************************************************866 PP

  == domain 3  score: -1.8 bits;  conditional E-value: 3.1
                 TT-HHHHHHHHHCTSH CS
      ANAPC3  36 ngqykrAyellrkakl 51 
                 + + krAy+ l   + 
  KOO21767.1 393 AREIKRAYHKLAVEWH 408
                 4567888888776655 PP

>> TPR_7  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.9   0.0     0.026        31      12      34 ..     208     228 ..     194     230 .. 0.85
   2 ?    0.6   0.1      0.63   7.5e+02      10      29 ..     266     285 ..     265     292 .. 0.80
   3 ?    3.0   0.0       0.1   1.3e+02      11      27 ..     304     318 ..     301     327 .. 0.85
   4 ?    3.4   0.1     0.078        93      13      33 ..     340     360 ..     331     363 .. 0.80
   5 ?   -1.1   0.1       2.2   2.6e+03      16      27 ..     367     378 ..     366     385 .. 0.80

  Alignments for each domain:
  == domain 1  score: 4.9 bits;  conditional E-value: 0.026
       TPR_7  12 lGdyeeAielyeqsLaltkdped 34 
                 +G++e A++++++  al  dpe+
  KOO21767.1 208 MGNTELALRHFRE--ALKLDPEH 228
                 79***********..88888876 PP

  == domain 2  score: 0.6 bits;  conditional E-value: 0.63
       TPR_7  10 srlGdyeeAielyeqsLalt 29 
                 +r+ +yeeA  l+ ++Lal+
  KOO21767.1 266 EREEQYEEARVLLDEALALA 285
                 57889**********76665 PP

  == domain 3  score: 3.0 bits;  conditional E-value: 0.1
       TPR_7  11 rlGdyeeAielyeqsLa 27 
                 rl+++e+A++++eq   
  KOO21767.1 304 RLRRTEDALKVCEQ--H 318
                 799***********..4 PP

  == domain 4  score: 3.4 bits;  conditional E-value: 0.078
       TPR_7  13 GdyeeAielyeqsLaltkdpe 33 
                  ++eeAi  ++q+L++++  +
  KOO21767.1 340 ERFEEAIAGFKQVLEMDEHSQ 360
                 689*********888887655 PP

  == domain 5  score: -1.1 bits;  conditional E-value: 2.2
       TPR_7  16 eeAielyeqsLa 27 
                 e+A++l+++s +
  KOO21767.1 367 EQAEKLFKRSKE 378
                 89******9654 PP

>> TPR_9  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.3   0.0      0.32   3.8e+02      32      61 ..     198     227 ..     191     246 .. 0.78
   2 ?   -0.6   0.2       1.2   1.5e+03       7      28 ..     267     288 ..     264     296 .. 0.65
   3 ?   10.1   0.2   0.00056      0.67       6      67 ..     303     364 ..     298     370 .. 0.93

  Alignments for each domain:
  == domain 1  score: 1.3 bits;  conditional E-value: 0.32
       TPR_9  32 rrdRGlllaqlGclsaAladLeaylalapd 61 
                 ++ RG     +G+++ Al+ +  +l l+p+
  KOO21767.1 198 LYKRGKQFWVMGNTELALRHFREALKLDPE 227
                 56666667779***************9995 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 1.2
       TPR_9   7 reedweralavverllllaPdd 28 
                 ree++e+a   ++  l+laP  
  KOO21767.1 267 REEQYEEARVLLDEALALAPPN 288
                 6666666666666666666654 PP

  == domain 3  score: 10.1 bits;  conditional E-value: 0.00056
       TPR_9   6 ireedweralavverllllaPddpeerrdRGlllaqlGclsaAladLeaylalapdapdaea 67 
                 ir ++ e al+v+e   + ++ + + r+    +l+  +++++A+a + + l+++++ +da+ 
  KOO21767.1 303 IRLRRTEDALKVCEQHTQHDSGSMSSRLLHSEALMLAERFEEAIAGFKQVLEMDEHSQDARK 364
                 788999*****************************************************986 PP

>> TPR_6  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.8   0.0    0.0047       5.6       3      32 ..     198     227 ..     198     228 .. 0.92
   2 ?    0.8   0.1      0.79   9.4e+02      11      30 ..     267     285 ..     262     287 .. 0.77
   3 ?    0.2   0.0       1.3   1.5e+03      10      28 ..     336     354 ..     328     355 .. 0.75

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 0.0047
                 HHHHHHHHHHHHHHHHHHHHHHHHHHH-TT CS
       TPR_6   3 lyklalsyrklgdtdkAlealerlikeYPd 32 
                 lyk+++ +  +g+t+ Al+ +++ +k  P+
  KOO21767.1 198 LYKRGKQFWVMGNTELALRHFREALKLDPE 227
                 89999999999***************9997 PP

  == domain 2  score: 0.8 bits;  conditional E-value: 0.79
                 HHHHHHHHHHHHHHHHHHH- CS
       TPR_6  11 rklgdtdkAlealerlikeY 30 
                 r+  ++++A+ +l++ +   
  KOO21767.1 267 REE-QYEEARVLLDEALALA 285
                 345.9*******99988765 PP

  == domain 3  score: 0.2 bits;  conditional E-value: 1.3
                 HHHHHHHHHHHHHHHHHHH CS
       TPR_6  10 yrklgdtdkAlealerlik 28 
                 +  + + ++A++ ++++++
  KOO21767.1 336 LMLAERFEEAIAGFKQVLE 354
                 444448999**99999985 PP

>> DUF2116  Uncharacterized protein containing a Zn-ribbon (DUF2116)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.1   3.0    0.0022       2.7      13      38 ..     150     175 ..     147     177 .. 0.83
   2 ?   -1.2   0.1       1.8   2.1e+03      23      36 ..     230     243 ..     228     251 .. 0.76

  Alignments for each domain:
  == domain 1  score: 8.1 bits;  conditional E-value: 0.0022
     DUF2116  13 IpldesfCsekCqeeyekkrkkvars 38 
                  + +e +C ++C+++++  r + a+ 
  KOO21767.1 150 CEHEEFTCNDRCEQQWRWLREQRANR 175
                 6789************9988886665 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 1.8
     DUF2116  23 kCqeeyekkrkkva 36 
                 kC+  y++++k ++
  KOO21767.1 230 KCKADYKHAKKVAK 243
                 8*****99887655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (476 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1025  (0.0571699); expected 358.6 (0.02)
Passed bias filter:                      452  (0.0252106); expected 358.6 (0.02)
Passed Vit filter:                        50  (0.00278878); expected 17.9 (0.001)
Passed Fwd filter:                        16  (0.000892409); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              15  [number of targets reported over threshold]
# CPU time: 0.49u 0.24s 00:00:00.73 Elapsed: 00:00:00.39
# Mc/sec: 3666.05
//
Query:       KOO21768.1  [L=1836]
Description: coiled-coil domain-containing protein 108 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.3e-35  121.5   1.3    1.2e-05   25.4   0.2   10.0 10  ASH           Abnormal spindle-like microcephaly-assoc'd, ASP
    7.7e-19   67.6   0.0    0.00044   20.1   0.0    8.5 11  Motile_Sperm  MSP (Major sperm protein) domain
      1e-09   38.4   0.4       0.62   10.3   0.0    5.9  6  PapD-like     Flagellar-associated PapD-like
      3e-08   33.6   0.0        1.3    9.0   0.1    6.4  8  DUF1573       Protein of unknown function (DUF1573)
    1.9e-06   28.0  11.7      0.045   14.0   0.1    6.9  8  TMEM131_like  Transmembrane protein 131-like
      3e-06   27.0   0.0        8.9    6.3   0.0    6.8  8  DUF5001       Ig-like domain
  ------ inclusion threshold ------
       0.01   15.8   0.0        9.8    6.1   0.0    4.2  5  PapD_N        Pili and flagellar-assembly chaperone, PapD N-t
      0.083   13.0   0.0        2.1    8.5   0.0    3.0  3  Fn3-like      Fibronectin type III-like domain


Domain annotation for each model (and alignments):
>> ASH  Abnormal spindle-like microcephaly-assoc'd, ASPM-SPD-2-Hydin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.1   0.0     1e-06    0.0022      25      92 ..      65     131 ..      60     133 .. 0.88
   2 !   25.4   0.2   5.6e-09   1.2e-05      11      80 ..     149     215 ..     140     232 .. 0.86
   3 ?    2.2   0.0      0.09     2e+02      50      82 ..     288     320 ..     245     322 .. 0.72
   4 !   17.0   0.0   2.2e-06     0.005       3      83 ..     348     427 ..     346     439 .. 0.85
   5 !    6.2   0.0    0.0053        12      52      79 ..     595     622 ..     546     628 .. 0.86
   6 !   22.4   0.0   4.6e-08    0.0001       4      92 ..     677     760 ..     674     763 .. 0.89
   7 ?    1.9   0.0      0.12   2.6e+02      18      78 ..     787     847 ..     775     855 .. 0.79
   8 !   12.2   0.0     7e-05      0.16      10      37 ..     892     919 ..     887     940 .. 0.88
   9 ?   -4.0   0.0         8   1.8e+04      52      72 ..    1167    1187 ..    1157    1188 .. 0.79
  10 ?    1.1   0.0      0.21   4.7e+02      16      64 ..    1376    1425 ..    1372    1436 .. 0.70

  Alignments for each domain:
  == domain 1  score: 18.1 bits;  conditional E-value: 1e-06
                 EEEE-EEESS-SS--EEEEEEEE--XXXXXXXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
         ASH  25 aerlLtveNpseepaevkvskvpaaekgfsveete.levqpgesvtltvtwtPteegavrevLqflvnd 92 
                  +++Ltv+N s+++++vk+ k+p ++k fs+   e + + +g s t++v++ P+   +  ev+ f+++ 
  KOO21768.1  65 YTKTLTVKNVSKQAVTVKY-KLP-DSKFFSMAFPEkIMLNAGLSKTVEVSFRPQLLEPYDEVIEFTTDT 131
                 5899********9877776.677.789999988888******************************985 PP

  == domain 2  score: 25.4 bits;  conditional E-value: 5.6e-09
                 -.EEEEE-----EEEEEEE-EEESS-SS--EEEEEEEE--XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
         ASH  11 k.pfvsFgdvkvGssaerlLtveNpseepaevkvskvpaaekgfsveetelevqpgesvtltvtwtPteeg 80 
                   + ++Fg  +v+  ++r+  v+N++e p+e  +s+ +     f++++t+ +vqp +  +++vt+ P+++ 
  KOO21768.1 149 VpTHLDFGFCPVNDVETRSFHVTNDGELPIEFSLSCEA----PFTLKPTSGTVQPRQHASIEVTFIPKDAS 215
                 44889************************999999988....9************************9875 PP

  == domain 3  score: 2.2 bits;  conditional E-value: 0.09
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
         ASH  50 ekgfsveetelevqpgesvtltvtwtPteegav 82 
                 e  f   +t+  ++p++++ + v++ P+ +g+ 
  KOO21768.1 288 EPSFVFHPTSGIIPPDGELDVGVQFRPKVTGTF 320
                 4457778888******************99975 PP

  == domain 4  score: 17.0 bits;  conditional E-value: 2.2e-06
                 EEE-TTB--EEEEE-----...EEEEEEE-EEESS-SS--EEEEEEEE--XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XX CS
         ASH   3 lllapfsrkpfvsFgdvkv...GssaerlLtveNpseepaevkvskvpaaekgfsveetelevqpgesvtltvtwtPteega.vr 83 
                 l+l++      ++F dv +    +s +r  +++N se p+   +  +  ++  f++e+++ +v+p+ s  +t+t++P e g+  r
  KOO21768.1 348 LVLSK----EVINFNDVIIqlpRQSSSRIFEIHNKSEIPVPFQLHSIE-PNGLFTLEPAHGVVPPNLSAHVTFTFSPPEPGNyYR 427
                 56666....78899999985556899*************999999999.****************************99998444 PP

  == domain 5  score: 6.2 bits;  conditional E-value: 0.0053
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
         ASH  52 gfsveetelevqpgesvtltvtwtPtee 79 
                  f v++++++v p+++  + v++ P++ 
  KOO21768.1 595 VFAVTPAQCDVGPNSTAEFAVQFRPQSD 622
                 599**********************986 PP

  == domain 6  score: 22.4 bits;  conditional E-value: 4.6e-08
                 EE-TTB--EEEEE-----EEEEEEE-EEESS-SS--EEEEEEEE--XXXXXXXXXXXXXXXXXXXXXXXXXXXXXX..XXXXXXXXXXXXX CS
         ASH   4 llapfsrkpfvsFgdvkvGssaerlLtveNpseepaevkvskvpaaekgfsveetelevqpgesvtltvtwtPtee..gavrevLqflvnd 92 
                 +l++      ++F  v  G    +++ ++N++++p   +vs+++     f + ++  +v++ge++ l v ++P+++   + +++L++ +++
  KOO21768.1 677 ILSH----SLLTFPAVHCGDASFQTISIRNDNDTPMLFEVSDLA---SSFAILPAVGVVPAGETQLLAVRFQPADArrYRTTAMLTLNNDG 760
                 6666....7899************************99999999...99*************************99445588889988776 PP

  == domain 7  score: 1.9 bits;  conditional E-value: 0.12
                 ----EEEEEEE-EEESS-SS--EEEEEEEE--XXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
         ASH  18 dvkvGssaerlLtveNpseepaevkvskvpaaekgfsveetelevqpgesvtltvtwtPte 78 
                 +  vG    ++Lt++Nps  p+  + +   +    ++v+    ++ + es+ l+  ++P++
  KOO21768.1 787 TACVGAASHAKLTLTNPSRLPLAYEWDIPEKLVGLLTVDCPAGVLRGRESIELDWRFAPNA 847
                 56699999***********997777666665666677777778888888888888888875 PP

  == domain 8  score: 12.2 bits;  conditional E-value: 7e-05
                 --EEEEE-----EEEEEEE-EEESS-SS CS
         ASH  10 rkpfvsFgdvkvGssaerlLtveNpsee 37 
                  +p v+F +v vG+s++r+Lt+ N s+ 
  KOO21768.1 892 DPPVVDFKTVLVGNSHRRTLTLINSSPV 919
                 4699********************9975 PP

  == domain 9  score: -4.0 bits;  conditional E-value: 8
                  XXXXXXXXXXXXXXXXXXXXX CS
         ASH   52 gfsveetelevqpgesvtltv 72  
                   + v+++  e++pge+v l v
  KOO21768.1 1167 VLAVSPKMAELAPGEDVELLV 1187
                  5678999999****9999866 PP

  == domain 10  score: 1.1 bits;  conditional E-value: 0.21
                  E-----EEEEEEE-EEESS-SS-.-EEEEEEEE--XXXXXXXXXXXXXXX CS
         ASH   16 FgdvkvGssaerlLtveNpseep.aevkvskvpaaekgfsveetelevqp 64  
                  Fg+v+ G + ++lL+++N +  p      ++ p   + +s+ +++ +v +
  KOO21768.1 1376 FGQVPQGATLRKLLVLRNVHSMPcDFAWDTTHPLWGTILSIYPSSGTVGA 1425
                  ******************99988433344444445555555555555555 PP

>> Motile_Sperm  MSP (Major sperm protein) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.4   0.0    0.0002      0.45      18      74 ..      63     120 ..      57     128 .. 0.86
   2 !   20.1   0.0     2e-07   0.00044      17      72 ..     161     214 ..     149     227 .. 0.89
   3 ?    0.6   0.0      0.22   4.9e+02      43      69 ..     288     314 ..     258     322 .. 0.79
   4 !   10.4   0.0   0.00019      0.44      15      70 ..     366     420 ..     352     442 .. 0.76
   5 ?   -3.0   0.0       2.9   6.5e+03      45      72 ..     595     622 ..     592     631 .. 0.74
   6 !   11.0   0.0   0.00013       0.3       9      72 ..     682     745 ..     677     758 .. 0.85
   7 ?   -0.5   0.0      0.48   1.1e+03      18      36 ..     792     810 ..     778     812 .. 0.77
   8 ?   -3.7   0.0       4.7   1.1e+04       5      33 ..     892     920 ..     889     924 .. 0.69
   9 ?   -1.7   0.0       1.1   2.5e+03      50      73 ..     950     973 ..     943     987 .. 0.77
  10 ?   -1.0   0.0      0.69   1.5e+03      47      73 ..    1169    1195 ..    1164    1198 .. 0.85
  11 ?   -1.8   0.0       1.2   2.7e+03      18      61 ..    1383    1429 ..    1372    1438 .. 0.78

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.0002
                   SHEEEEEEEEE-SSSSEEEEEEES-TTTEEEE.SSEEEETTTCEEEEEEEEESSSSST CS
  Motile_Sperm  18 kqgtsklklkNtskkrvaFkvkttapkkyrvr.PnvGiikpgesveitvtlkpldeep 74 
                   ++ t++l++kN+sk++v +k k  + k + +  P   ++++g s +++v ++p+  ep
    KOO21768.1  63 GEYTKTLTVKNVSKQAVTVKYKLPDSKFFSMAfPEKIMLNAGLSKTVEVSFRPQLLEP 120
                   45699************************986488888999********999976555 PP

  == domain 2  score: 20.1 bits;  conditional E-value: 2e-07
                   SSHEEEEEEEEE-SSSSEEEEEEES-TTTEEEESSEEEETTTCEEEEEEEEESSSS CS
  Motile_Sperm  17 nkqgtsklklkNtskkrvaFkvkttapkkyrvrPnvGiikpgesveitvtlkplde 72 
                   n+ +t +  ++N  + ++ F   + ap  ++ +P++G+++p++++ i+vt+ p+d 
    KOO21768.1 161 NDVETRSFHVTNDGELPIEFSLSCEAP--FTLKPTSGTVQPRQHASIEVTFIPKDA 214
                   56789999*******************..***********************9664 PP

  == domain 3  score: 0.6 bits;  conditional E-value: 0.22
                   TTTEEEESSEEEETTTCEEEEEEEEES CS
  Motile_Sperm  43 pkkyrvrPnvGiikpgesveitvtlkp 69 
                     +++  P++Gii p+ ++++ v ++p
    KOO21768.1 288 EPSFVFHPTSGIIPPDGELDVGVQFRP 314
                   5679999**************998888 PP

  == domain 4  score: 10.4 bits;  conditional E-value: 0.00019
                   STSSHEEEEE.EEEE-SSSSEEEEEEES-TT.TEEEESSEEEETTTCEEEEEEEEESS CS
  Motile_Sperm  15 elnkqgtskl.klkNtskkrvaFkvkttapk.kyrvrPnvGiikpgesveitvtlkpl 70 
                       q++s + ++ N+s+ +v F+  +  p+  ++ +P+ G++ p+ s+++t t+ p+
    KOO21768.1 366 R---QSSSRIfEIHNKSEIPVPFQLHSIEPNgLFTLEPAHGVVPPNLSAHVTFTFSPP 420
                   2...3555555****************998747999****************999983 PP

  == domain 5  score: -3.0 bits;  conditional E-value: 2.9
                   TEEEESSEEEETTTCEEEEEEEEESSSS CS
  Motile_Sperm  45 kyrvrPnvGiikpgesveitvtlkplde 72 
                    + v P+   + p++++e+ v ++p+  
    KOO21768.1 595 VFAVTPAQCDVGPNSTAEFAVQFRPQSD 622
                   5778888888999999999998888433 PP

  == domain 6  score: 11.0 bits;  conditional E-value: 0.00013
                   EEEEESST.SSHEEEEEEEEE-SSSSEEEEEEES-TTTEEEESSEEEETTTCEEEEEEEEESSSS CS
  Motile_Sperm   9 llvfaael.nkqgtsklklkNtskkrvaFkvkttapkkyrvrPnvGiikpgesveitvtlkplde 72 
                   ll+f+a + ++ + +++++ N  ++++ F v   a  ++ + P+vG++ +ge+  + v ++p d 
    KOO21768.1 682 LLTFPAVHcGDASFQTISIRNDNDTPMLFEVSDLAS-SFAILPAVGVVPAGETQLLAVRFQPADA 745
                   555666555777899****************88877.9************************765 PP

  == domain 7  score: -0.5 bits;  conditional E-value: 0.48
                   SHEEEEEEEEE-SSSSEEE CS
  Motile_Sperm  18 kqgtsklklkNtskkrvaF 36 
                     +  kl+l+N+s  ++a+
    KOO21768.1 792 AASHAKLTLTNPSRLPLAY 810
                   457789********99998 PP

  == domain 8  score: -3.7 bits;  conditional E-value: 4.7
                   ESSSEEEEESSTSSHEEEEEEEEE-SSSS CS
  Motile_Sperm   5 dPsdllvfaaelnkqgtsklklkNtskkr 33 
                   dP+ + +++   +++++ +l+l+N s  +
    KOO21768.1 892 DPPVVDFKTVLVGNSHRRTLTLINSSPVD 920
                   666555555545677899******99765 PP

  == domain 9  score: -1.7 bits;  conditional E-value: 1.1
                   SSEEEETTTCEEEEEEEEESSSSS CS
  Motile_Sperm  50 PnvGiikpgesveitvtlkpldee 73 
                    n G++ ++++++++++lkp++ e
    KOO21768.1 950 QNEGLVPARNTMDVKLVLKPPRRE 973
                   577899999999999999996554 PP

  == domain 10  score: -1.0 bits;  conditional E-value: 0.69
                    EEESSEEEETTTCEEEEEEEEESSSSS CS
  Motile_Sperm   47 rvrPnvGiikpgesveitvtlkpldee 73  
                     v P ++ ++pge ve+ v +++++  
    KOO21768.1 1169 AVSPKMAELAPGEDVELLVKMRHFRAD 1195
                    68999*************999987765 PP

  == domain 11  score: -1.8 bits;  conditional E-value: 1.2
                    SHEEEEEEEEE-SSSSEEEEEEES-T...TTEEEESSEEEETTTCEE CS
  Motile_Sperm   18 kqgtsklklkNtskkrvaFkvkttap...kkyrvrPnvGiikpgesv 61  
                     + ++ l l N+++ ++ F   tt p   +   ++P++G++ +g+++
    KOO21768.1 1383 ATLRKLLVLRNVHSMPCDFAWDTTHPlwgTILSIYPSSGTVGAGKHL 1429
                    55677789999999999999999999555568899999999999875 PP

>> PapD-like  Flagellar-associated PapD-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.4   0.0     0.001       2.3      18      99 ..      61     140 ..      58     143 .. 0.90
   2 !    8.6   0.0   0.00089         2       2      49 ..     242     290 ..     241     312 .. 0.82
   3 ?    0.6   0.1      0.28   6.3e+02       2      87 ..     346     432 ..     345     439 .. 0.82
   4 ?   -3.8   0.0       6.8   1.5e+04      15      53 ..     787     825 ..     779     830 .. 0.75
   5 !   10.3   0.0   0.00027      0.62       5      53 ..     890     938 ..     887     942 .. 0.92
   6 ?    1.8   0.0      0.12   2.7e+02      12      83 ..    1375    1447 ..    1365    1453 .. 0.72

  Alignments for each domain:
  == domain 1  score: 8.4 bits;  conditional E-value: 0.001
   PapD-like  18 pgnryvltvellnvstvpcRyrvrlpavvkkllsveYkrq.FvaPGltvklkvelsgaqplGemdselsvvheggivevevra 99 
                 pg  y +t+++ nvs +    + +lp+  +k++s+ ++++  ++ Gl+  ++v     q l + d  +  ++++g++ v +ra
  KOO21768.1  61 PGGEYTKTLTVKNVSKQAVTVKYKLPD--SKFFSMAFPEKiMLNAGLSKTVEVSFR-PQLLEPYDEVIEFTTDTGSFVVPIRA 140
                 77889**********************..99******987368***********99.99999999999999999999998886 PP

  == domain 2  score: 8.6 bits;  conditional E-value: 0.00089
   PapD-like   2 PtlevsPakveFGkvlpgnryvltvellnvstvpcRyr.vrlpavvkkl 49 
                 P l  s ++++ G vl+ n   +  +l n+s v +R+  vr+ + v++ 
  KOO21768.1 242 PFLTCSSERIDCGAVLTSNTLTKHFKLRNTSLVFARFElVRVDNDVEPS 290
                 778888999****************************834665555555 PP

  == domain 3  score: 0.6 bits;  conditional E-value: 0.28
   PapD-like   2 PtlevsPakveFGkvl...pgnryvltvellnvstvpcRyrvrlpavvkkllsveYkrqFvaPGltvklkvelsgaqplGemdselsvv 87 
                 P+l +s ++++F  v+   p +   +  e+ n s  p  +++   + ++ l++ e  ++ v P l+ ++    s   ++G+   ++ v 
  KOO21768.1 346 PELVLSKEVINFNDVIiqlPRQSSSRIFEIHNKSEIPVPFQLHSIE-PNGLFTLEPAHGVVPPNLSAHVTFTFS-PPEPGNYYRRVYVL 432
                 7788888899999986333567777888999***********9988.99****************999998887.77788877777665 PP

  == domain 4  score: -3.8 bits;  conditional E-value: 6.8
   PapD-like  15 kvlpgnryvltvellnvstvpcRyrvrlpavvkkllsve 53 
                 +   g +  + ++l+n s  p  y   +p+++  ll+v+
  KOO21768.1 787 TACVGAASHAKLTLTNPSRLPLAYEWDIPEKLVGLLTVD 825
                 555666777789999*99999999999999888888776 PP

  == domain 5  score: 10.3 bits;  conditional E-value: 0.00027
   PapD-like   5 evsPakveFGkvlpgnryvltvellnvstvpcRyrvrlpavvkkllsve 53 
                 ++ P +v+F +vl gn   +t++l+n s v   y + ++ +  + l+v+
  KOO21768.1 890 QADPPVVDFKTVLVGNSHRRTLTLINSSPVDLWYSLSFTREGDPALHVS 938
                 6789*********************************999999999986 PP

  == domain 6  score: 1.8 bits;  conditional E-value: 0.12
   PapD-like   12 eFGkvlpgnryvltvellnvstvpcRyrvrlpa.vvkkllsveYkrqFvaPGltvklkvelsgaqplGemdse 83  
                   FG+v +g    + ++l nv  +pc +    ++     +ls++ + + v  G     k+ l g  p+ e++++
  KOO21768.1 1375 LFGQVPQGATLRKLLVLRNVHSMPCDFAWDTTHpLWGTILSIYPSSGTVGAGKHLCCKLSLNGIGPPEELRTH 1447
                  59***********************998654430355666666666667666666666666666666666655 PP

>> DUF1573  Protein of unknown function (DUF1573)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.6   0.0     0.061   1.4e+02      16      78 ..      62     124 ..      58     140 .. 0.84
   2 !    9.0   0.1    0.0006       1.3       7      76 ..     152     218 ..     148     238 .. 0.78
   3 !    6.1   0.0    0.0049        11       2      75 ..     245     320 ..     244     323 .. 0.72
   4 !    6.1   0.0    0.0049        11       6      92 ..     353     443 ..     348     448 .. 0.73
   5 ?   -2.0   0.0       1.7   3.9e+03      54      85 ..     605     636 ..     598     642 .. 0.80
   6 ?   -2.5   0.0       2.4   5.4e+03      56      86 ..     730     759 ..     727     774 .. 0.54
   7 ?   -3.1   0.0       3.7   8.3e+03      48      72 ..    1171    1194 ..    1166    1218 .. 0.61
   8 ?   -2.3   0.0       2.1   4.7e+03      16      33 ..    1244    1261 ..    1241    1264 .. 0.88

  Alignments for each domain:
  == domain 1  score: 2.6 bits;  conditional E-value: 0.061
     DUF1573  16 gekvtatFeftNtgkaplvitnvktsCgCttpeypke.piapGesgkikvtfnakgrpgefnkt 78 
                 g++ t t +++N +k+ ++++    +    ++ +p++  ++ G s +++v+f ++   +  +  
  KOO21768.1  62 GGEYTKTLTVKNVSKQAVTVKYKLPDSKFFSMAFPEKiMLNAGLSKTVEVSFRPQL-LEPYDEV 124
                 56789999*************************999846899**********9986.5555555 PP

  == domain 2  score: 9.0 bits;  conditional E-value: 0.0006
     DUF1573   7 tidfgkieegekvtatFeftNtgkaplvitnvktsCgC.ttpeypkepiapGesgkikvtfnakgrpgefn 76 
                   dfg +  ++  t +F++tN+g+ p+     + sC+   t + +  +++p + ++i+vtf +k+ +  f 
  KOO21768.1 152 HLDFGFCPVNDVETRSFHVTNDGELPIE---FSLSCEApFTLKPTSGTVQPRQHASIEVTFIPKD-ASVFV 218
                 67999999999*************9985...67899873566777889*************9999.54444 PP

  == domain 3  score: 6.1 bits;  conditional E-value: 0.0049
     DUF1573   2 kfeettidfgkieegekvtatFeftNtgkaplvitnvktsCgCttpey....pkepiapGesgkikvtfnakgrpgef 75 
                 + ++++id+g + ++++ t  F+++Nt+      + v+ + + ++p++    +   i p+ + ++ v+f +k   g+f
  KOO21768.1 245 TCSSERIDCGAVLTSNTLTKHFKLRNTSLVFARFELVRVDND-VEPSFvfhpTSGIIPPDGELDVGVQFRPKV-TGTF 320
                 567899*********************987666666666554.344443333445577777777777777777.6666 PP

  == domain 4  score: 6.1 bits;  conditional E-value: 0.0049
     DUF1573   6 ttidfgki...eegekvtatFeftNtgkapl..vitnvktsCgCttpeypkepiapGesgkikvtfnakgrpgefnktvtv.yantekepttl 92 
                 ++i+f+++     +++ +  Fe+ N+++ p+   +++++   g  t e  +  + p+ s++++ tf++ + pg+ +++v v + n+ ++ + l
  KOO21768.1 353 EVINFNDViiqLPRQSSSRIFEIHNKSEIPVpfQLHSIEP-NGLFTLEPAHGVVPPNLSAHVTFTFSPPE-PGNYYRRVYVlFHNAAPKAVDL 443
                 5566666542222466677899999998776114455555.488999999999*****************.*********9566776766655 PP

  == domain 5  score: -2.0 bits;  conditional E-value: 1.7
     DUF1573  54 iapGesgkikvtfnakgrpgefnktvtvyant 85 
                 + p+ +++  v+f +++ +    ++++ y++ 
  KOO21768.1 605 VGPNSTAEFAVQFRPQSDQQYYVQSLECYCSF 636
                 7899999********99888888888777765 PP

  == domain 6  score: -2.5 bits;  conditional E-value: 2.4
     DUF1573  56 pGesgkikvtfnakgrpgefnktvtvyante 86 
                  Ge+  + v+f++++ + + + t +++ n++
  KOO21768.1 730 AGETQLLAVRFQPAD-ARRYRTTAMLTLNND 759
                 567777777777766.444444444444443 PP

  == domain 7  score: -3.1 bits;  conditional E-value: 3.7
     DUF1573   48 eypkepiapGesgkikvtfnakgrp 72  
                  + +++++apGe  ++ v++   + +
  KOO21768.1 1171 SPKMAELAPGEDVELLVKMRHFR-A 1194
                  55677899999999999877655.4 PP

  == domain 8  score: -2.3 bits;  conditional E-value: 2.1
     DUF1573   16 gekvtatFeftNtgkapl 33  
                  ++++++tFe+ N ++ pl
  KOO21768.1 1244 QTPQRHTFELPNYSDVPL 1261
                  6799*********99997 PP

>> TMEM131_like  Transmembrane protein 131-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.4   0.1    0.0049        11      20      83 ..      66     128 ..      62     129 .. 0.88
   2 !   14.0   0.1     2e-05     0.045       4      72 ..     149     213 ..     147     222 .. 0.90
   3 ?   -1.4   0.0       1.3     3e+03      52      76 ..     296     320 ..     271     323 .. 0.82
   4 ?   -0.1   0.1      0.52   1.2e+03      50      76 ..     399     425 ..     353     432 .. 0.74
   5 ?    1.3   0.0      0.18   4.1e+02       7      33 ..     682     708 ..     678     737 .. 0.81
   6 ?   -2.5   0.0       2.8   6.2e+03       4      29 ..     779     804 ..     778     805 .. 0.89
   7 !    6.3   0.0     0.005        11       4      30 ..     892     918 ..     889     935 .. 0.89
   8 ?   -3.7   0.1       6.9   1.6e+04      54      70 ..    1290    1306 ..    1269    1309 .. 0.72

  Alignments for each domain:
  == domain 1  score: 6.4 bits;  conditional E-value: 0.0049
  TMEM131_like  20 srtvtvvNkhkkeklkllsvtsdsiefqssffeevvlpPggntslkvvFLPrelGaseaslkll 83 
                   ++t+tv+N   k++++++    ds+ f+ +f e+ +l+ g + +++v F P+ l + +  +++ 
    KOO21768.1  66 TKTLTVKN-VSKQAVTVKYKLPDSKFFSMAFPEKIMLNAGLSKTVEVSFRPQLLEPYDEVIEFT 128
                   57899***.77899*************************************9987777666665 PP

  == domain 2  score: 14.0 bits;  conditional E-value: 2e-05
  TMEM131_like   4 sPpeLdFgesslgkaasrtvtvvNkhkkeklkllsvtsdsiefqssffeevvlpPggntslkvvFLPre 72 
                   +P+ LdFg  ++ ++++r  +v N   + +l +    s +++f+    ++  ++P++++s++v F+P+ 
    KOO21768.1 149 VPTHLDFGFCPVNDVETRSFHVTN---DGELPIEFSLSCEAPFTL-KPTSGTVQPRQHASIEVTFIPKD 213
                   69**********************...788999988899999986.578999***************97 PP

  == domain 3  score: -1.4 bits;  conditional E-value: 1.3
  TMEM131_like  52 eevvlpPggntslkvvFLPrelGas 76 
                   ++  +pP g+  + v F P+  G +
    KOO21768.1 296 TSGIIPPDGELDVGVQFRPKVTGTF 320
                   566899***********99999976 PP

  == domain 4  score: -0.1 bits;  conditional E-value: 0.52
  TMEM131_like  50 ffeevvlpPggntslkvvFLPrelGas 76 
                      + v+pP+ ++++++ F P e G+ 
    KOO21768.1 399 EPAHGVVPPNLSAHVTFTFSPPEPGNY 425
                   566789*************99988875 PP

  == domain 5  score: 1.3 bits;  conditional E-value: 0.18
  TMEM131_like   7 eLdFgesslgkaasrtvtvvNkhkkek 33 
                    L F     g+a+++t+ ++N + +  
    KOO21768.1 682 LLTFPAVHCGDASFQTISIRNDNDTPM 708
                   68999999*************776544 PP

  == domain 6  score: -2.5 bits;  conditional E-value: 2.8
  TMEM131_like   4 sPpeLdFgesslgkaasrtvtvvNkh 29 
                   +P++L   +  +g a+ +++t+ N +
    KOO21768.1 779 MPSKLYMPTACVGAASHAKLTLTNPS 804
                   69999999999************975 PP

  == domain 7  score: 6.3 bits;  conditional E-value: 0.005
  TMEM131_like   4 sPpeLdFgesslgkaasrtvtvvNkhk 30 
                   +Pp+ dF++  +g+ + rt+t++N ++
    KOO21768.1 892 DPPVVDFKTVLVGNSHRRTLTLINSSP 918
                   7***********************765 PP

  == domain 8  score: -3.7 bits;  conditional E-value: 6.9
  TMEM131_like   54 vvlpPggntslkvvFLP 70  
                      +pPgg++++ + F P
    KOO21768.1 1290 GIIPPGGVAHVAFRFNP 1306
                    5799****999998866 PP

>> DUF5001  Ig-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.6   0.0     0.055   1.2e+02      14      56 ..      67     112 ..      60     122 .. 0.72
   2 !    6.3   0.0     0.004       8.9      13      64 ..     165     216 ..     160     223 .. 0.89
   3 ?   -1.1   0.0      0.81   1.8e+03      12      31 ..     369     388 ..     362     402 .. 0.74
   4 ?   -1.6   0.0       1.1   2.5e+03      40      75 ..     552     584 ..     545     588 .. 0.81
   5 ?    2.9   0.0     0.044     1e+02      11      57 ..     693     740 ..     683     754 .. 0.79
   6 ?   -2.5   0.0       2.1   4.8e+03       9      26 ..     904     921 ..     896     922 .. 0.77
   7 ?   -2.4   0.0         2   4.5e+03      19      48 ..     958     986 ..     957     991 .. 0.78
   8 ?    3.9   0.0     0.023        51       5      32 ..    1240    1267 ..    1236    1279 .. 0.80

  Alignments for each domain:
  == domain 1  score: 2.6 bits;  conditional E-value: 0.055
                 EEEEEEE-SSS-EEEEE-S--.TTEE--..SEEEE-TTEEEEEEEE CS
     DUF5001  14 leveikNkSdidFeLentsey.tfynyp..evitipanstttvvik 56 
                 +++++kN+S    + +++ ++ +f++++  e+i++ a+ ++tv+++
  KOO21768.1  67 KTLTVKNVSKQAVTVKYKLPDsKFFSMAfpEKIMLNAGLSKTVEVS 112
                 678899999765555554332144454445*************998 PP

  == domain 2  score: 6.3 bits;  conditional E-value: 0.004
                 EEEEEEEE-SSS-EEEEE-S--TTEE--SEEEE-TTEEEEEEEEE-TT---E CS
     DUF5001  13 vleveikNkSdidFeLentseytfynypevitipanstttvviktkekkesi 64 
                  ++++++N   ++ e+ ++ e+ f+  p   t+++++  ++++ +  k++s+
  KOO21768.1 165 TRSFHVTNDGELPIEFSLSCEAPFTLKPTSGTVQPRQHASIEVTFIPKDASV 216
                 57899*************************************9977766665 PP

  == domain 3  score: -1.1 bits;  conditional E-value: 0.81
                 TEEEEEEEE-SSS-EEEEE- CS
     DUF5001  12 kvleveikNkSdidFeLent 31 
                 +++ +ei NkS i+  +++ 
  KOO21768.1 369 SSRIFEIHNKSEIPVPFQLH 388
                 56678999999887666654 PP

  == domain 4  score: -1.6 bits;  conditional E-value: 1.1
                 -SEEEE-TTEEEEEEEEE-TT---EEEEEEEEEEEE CS
     DUF5001  40 pevitipanstttvviktkekkesidlkfeVlNali 75 
                  ++i+i    t ++v +   ++ ++++++ V N ++
  KOO21768.1 552 GSRIKISEARTVRLVNR---TNGKLTVQWAVPNGYV 584
                 57888888889999555...9999999999999998 PP

  == domain 5  score: 2.9 bits;  conditional E-value: 0.044
                 TTEEEEEEEE-SSS-EEEEE-S--T.TEE--SEEEE-TTEEEEEEEEE CS
     DUF5001  11 tkvleveikNkSdidFeLentseyt.fynypevitipanstttvvikt 57 
                  +  +++i+N  d +  +e ++ ++ f   p v ++pa++t+++ +++
  KOO21768.1 693 ASFQTISIRNDNDTPMLFEVSDLASsFAILPAVGVVPAGETQLLAVRF 740
                 56678999999999999999987761555678889*********9994 PP

  == domain 6  score: -2.5 bits;  conditional E-value: 2.1
                 ..TTEEEEEEEE-SSS-E CS
     DUF5001   9 tetkvleveikNkSdidF 26 
                  +  ++++++ N+S++d+
  KOO21768.1 904 GNSHRRTLTLINSSPVDL 921
                 5578999********996 PP

  == domain 7  score: -2.4 bits;  conditional E-value: 2
                 EE-SSS-EEEEE-S--TTEE--SEEEE-TT CS
     DUF5001  19 kNkSdidFeLentseytfynypevitipan 48 
                 +N+ d+++ L+  +++tf + + + t+ ++
  KOO21768.1 958 RNTMDVKLVLKPPRRETF-EFSVRCTLRPG 986
                 58999**********999.66666666655 PP

  == domain 8  score: 3.9 bits;  conditional E-value: 0.023
                  EEE...TTEEEEEEEE-SSS-EEEEE-S CS
     DUF5001    5 psnytetkvleveikNkSdidFeLents 32  
                  p+++++ ++ ++e+ N+Sd+++ +e + 
  KOO21768.1 1240 PIGLQTPQRHTFELPNYSDVPLPFEVQL 1267
                  56667789999**********9998764 PP

>> PapD_N  Pili and flagellar-assembly chaperone, PapD N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.0      0.63   1.4e+03      12      38 ..      61      87 ..      59      94 .. 0.84
   2 ?   -3.4   0.0       3.7   8.3e+03       6      33 ..     359     386 ..     355     390 .. 0.81
   3 ?    6.1   0.0    0.0044       9.8      16      74 ..     559     618 ..     543     628 .. 0.86
   4 ?    3.0   0.0      0.04        90      15      74 ..     693     741 ..     687     753 .. 0.78
   5 ?   -1.3   0.0      0.82   1.8e+03      17      71 ..    1128    1186 ..    1120    1203 .. 0.64

  Alignments for each domain:
  == domain 1  score: -0.9 bits;  conditional E-value: 0.63
                ETTSSEEEEEEEE-SSS-EEEEEEEEC CS
      PapD_N 12 nadekeasvtvkNtgkepylvqswvdd 38
                +++e  +++tvkN +k+++ v+ ++ d
  KOO21768.1 61 PGGEYTKTLTVKNVSKQAVTVKYKLPD 87
                56777899***********99987765 PP

  == domain 2  score: -3.4 bits;  conditional E-value: 3.7
                 SSEEEEETTSSEEEEEEEE-SSS-EEEE CS
      PapD_N   6 gtrviynadekeasvtvkNtgkepylvq 33 
                  + + ++ ++++  ++++N+++ p+  q
  KOO21768.1 359 DVIIQLPRQSSSRIFEIHNKSEIPVPFQ 386
                 56678899999999*******9998777 PP

  == domain 3  score: 6.1 bits;  conditional E-value: 0.0044
                 SEEEEEEEE-SSS-EEEEEEEECTTSSSTCCSSCS.SEEEESSEEEE-TTEEEEEEE.EE CS
      PapD_N  16 keasvtvkNtgkepylvqswvddgdeeaedekakaspfvvtPPlfrlepgeeqvlRi.vt 74 
                 ++ +v++ N+++ ++ vq  v +g  ++ +++ ka+ f vtP    + p+++    + ++
  KOO21768.1 559 EARTVRLVNRTNGKLTVQWAVPNGYVNGGPKDLKAAVFAVTPAQCDVGPNSTAEFAVqFR 618
                 5789*******************99999999888889********999999887766554 PP

  == domain 4  score: 3.0 bits;  conditional E-value: 0.04
                 SSEEEEEEEE-SSS-EEEEEEEECTTSSSTCCSSCS.SEEEESSEEEE-TTEEEEEEE.EE CS
      PapD_N  15 ekeasvtvkNtgkepylvqswvddgdeeaedekakaspfvvtPPlfrlepgeeqvlRi.vt 74 
                 ++ ++++++N++++p+l ++  +d         a+   f ++P +  + +ge+q l + ++
  KOO21768.1 693 ASFQTISIRNDNDTPMLFEV--SD--------LAS--SFAILPAVGVVPAGETQLLAVrFQ 741
                 56678999999999999864..44........333..599999999999999999988555 PP

  == domain 5  score: -1.3 bits;  conditional E-value: 0.82
                  EEEEEEEE-SSS-EEEEEEEECTTSSSTCC....SSCS.SEEEESSEEEE-TTEEEEEE CS
      PapD_N   17 easvtvkNtgkepylvqswvddgdeeaede....kakaspfvvtPPlfrlepgeeqvlR 71  
                  +as++++  ++ ++ ++ w d+g+ +a++       ++  + v+P ++ l pge+  l 
  KOO21768.1 1128 GASFRLRYPTEMELQIEHWADKGEPTARELkqhlIVDKGVLAVSPKMAELAPGEDVELL 1186
                  56777778888888889999985554322200012223347777777777777776655 PP

>> Fn3-like  Fibronectin type III-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.5   0.0   0.00092       2.1      25      65 ..      97     136 ..      95     140 .. 0.91
   2 ?   -0.0   0.0      0.43   9.7e+02      29      68 ..     197     236 ..     194     237 .. 0.87
   3 ?   -2.9   0.0       3.5   7.8e+03      29      51 ..     728     750 ..     725     753 .. 0.82

  Alignments for each domain:
  == domain 1  score: 8.5 bits;  conditional E-value: 0.00092
                 EEEEE-TT-EEEEEEEEECGGG-EEETTTTEEE--SCEEEE CS
    Fn3-like  25 ekveLapGesktvtftldrkdlsvwdeekqkwvvepGeytv 65 
                 ek+ L++G sktv++++ ++ l  +de   ++ +++G++ v
  KOO21768.1  97 EKIMLNAGLSKTVEVSFRPQLLEPYDEVI-EFTTDTGSFVV 136
                 799************************95.89999999987 PP

  == domain 2  score: -0.0 bits;  conditional E-value: 0.43
                 E-TT-EEEEEEEEECGGG-EEETTTTEEE--SCEEEEEEE CS
    Fn3-like  29 LapGesktvtftldrkdlsvwdeekqkwvvepGeytvlvg 68 
                 ++p + + +++t+ +kd sv+  +  + v+ + ++t+ +g
  KOO21768.1 197 VQPRQHASIEVTFIPKDASVFVAQCVCTVAGDRSHTIKIG 236
                 7999999***************998788877888998888 PP

  == domain 3  score: -2.9 bits;  conditional E-value: 3.5
                 E-TT-EEEEEEEEECGGG-EEET CS
    Fn3-like  29 LapGesktvtftldrkdlsvwde 51 
                 +++Ge++ + +++++ d + + +
  KOO21768.1 728 VPAGETQLLAVRFQPADARRYRT 750
                 789******99999999887766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1836 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       537  (0.0299515); expected 358.6 (0.02)
Passed bias filter:                      348  (0.0194099); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.96u 0.26s 00:00:01.22 Elapsed: 00:00:00.44
# Mc/sec: 12532.61
//
Query:       KOO21769.1  [L=396]
Description: hypothetical protein Ctob_001069 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    0.00029   20.5   0.4     0.0012   18.6   0.0    2.2  3  EF-hand_6    EF-hand domain
     0.0028   17.1   0.0      0.047   13.3   0.0    2.5  2  EF-hand_1    EF hand
     0.0048   17.1   0.0     0.0073   16.5   0.0    1.2  1  Laminin_G_3  Concanavalin A-like lectin/glucanases superfamil
  ------ inclusion threshold ------
       0.11   12.9   0.0        0.2   12.1   0.0    1.4  1  SUKH-3       SUKH-3 immunity protein


Domain annotation for each model (and alignments):
>> EF-hand_6  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.8   0.0         4   1.8e+04      20      26 ..      96     102 ..      95     103 .. 0.81
   2 !   18.6   0.0   2.7e-07    0.0012       2      26 ..     146     170 ..     145     173 .. 0.92
   3 ?   -2.2   0.0       1.2   5.5e+03      17      26 ..     196     205 ..     195     207 .. 0.84

  Alignments for each domain:
  == domain 1  score: -3.8 bits;  conditional E-value: 4
   EF-hand_6  20 eElrkal 26 
                 +Elr+a+
  KOO21769.1  96 DELRQAI 102
                 8999997 PP

  == domain 2  score: 18.6 bits;  conditional E-value: 2.7e-07
   EF-hand_6   2 lreaFklfDkdgdGkidaeElrkal 26 
                 l++aF +fD+d++G ++ +E+  al
  KOO21769.1 146 LHDAFLMFDYDRNGLLSLAEVYGAL 170
                 899*****************99888 PP

  == domain 3  score: -2.2 bits;  conditional E-value: 1.2
   EF-hand_6  17 idaeElrkal 26 
                 ++++E++ +l
  KOO21769.1 196 LTYSEFIELL 205
                 899***9988 PP

>> EF-hand_1  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.3   0.0     1e-05     0.047       2      23 ..     146     167 ..     145     171 .. 0.87
   2 ?    1.0   0.0     0.086   3.9e+02      17      27 ..     196     206 ..     195     207 .. 0.86

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 1e-05
                 HHHHHHHHTTTSSSEEEHHHHH CS
   EF-hand_1   2 lkeiFrefDkDgdGkIdfeEfk 23 
                 l ++F +fD D++G +++ E  
  KOO21769.1 146 LHDAFLMFDYDRNGLLSLAEVY 167
                 789***************9975 PP

  == domain 2  score: 1.0 bits;  conditional E-value: 0.086
                 EEHHHHHHHHH CS
   EF-hand_1  17 IdfeEfkellk 27 
                 ++++Ef+ell+
  KOO21769.1 196 LTYSEFIELLA 206
                 89******997 PP

>> Laminin_G_3  Concanavalin A-like lectin/glucanases superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.0   1.6e-06    0.0073      73     111 ..     276     316 ..     236     361 .. 0.69

  Alignments for each domain:
  == domain 1  score: 16.5 bits;  conditional E-value: 1.6e-06
  Laminin_G_3  73 sgasvpageWtHvavtyd..ggtlrlYvNGvevgsatltgg 111
                  ++   ++ +W+ + +++d  +g +r Y++Gvev++ + +  
   KOO21769.1 276 TSPRCEPTSWHAISCVVDaiAGVMRTYIDGVEVAEIKEAKV 316
                  45677899**********98899***********9987666 PP

>> SUKH-3  SUKH-3 immunity protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   4.4e-05       0.2      47     118 ..     199     266 ..     166     276 .. 0.76

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 4.4e-05
      SUKH-3  47 eeFggLrv.pkt..gpgrqvapaeididpleaeeigehkaetlaeleealgeeliPiGseadgeatlaidedGrv 118
                 +eF +L   p+t  ++ +++a a +d+ p         +ae  +++ ++ ++++iP G+e d++a l++d +G v
  KOO21769.1 199 SEFIELLAsPETnpDDVVALAAAPLDMAPM-------GEAELQSDVIRRTQTRVIPKGEEGDDDAQLFVDDEGGV 266
                 566677444333123333355555555555.......3567889****************************977 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (396 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       588  (0.032796); expected 358.6 (0.02)
Passed bias filter:                      450  (0.025099); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.48u 0.27s 00:00:00.75 Elapsed: 00:00:00.41
# Mc/sec: 2869.46
//
Query:       KOO21770.1  [L=1489]
Description: protein serine threonine kinase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.8e-62  211.1   0.0    4.1e-62  209.9   0.0    1.6  2  Pkinase         Protein kinase domain
    4.1e-39  134.4   0.0      6e-39  133.9   0.0    1.2  1  Pkinase_Tyr     Protein tyrosine kinase
    7.3e-11   42.0   0.2    2.5e-10   40.2   0.0    2.1  2  SnoaL           SnoaL-like polyketide cyclase
    3.3e-08   33.7   0.0    0.00047   20.4   0.0    4.1  4  PAS_9           PAS domain
      0.001   18.4   0.0      0.062   12.6   0.0    2.4  2  Kinase-like     Kinase-like
  ------ inclusion threshold ------
       0.14   11.0   0.0       0.31    9.8   0.0    1.5  1  Pkinase_fungal  Fungal protein kinase


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  209.9   0.0   1.4e-65   4.1e-62       3     256 ..     224     479 ..     222     499 .. 0.89
   2 ?   -2.7   0.0         1   3.1e+03     140     171 ..    1308    1337 ..    1307    1341 .. 0.85

  Alignments for each domain:
  == domain 1  score: 209.9 bits;  conditional E-value: 1.4e-65
                 EEEEEEEESSEEEEEEEETTTTEEEEEEEEECHCHCHHHH..HHHHHHHHHHHHHS...CTTB--EEEEEEESSEEEEEEE--TTEBHHHHHHHHSS-- CS
     Pkinase   3 kleklGeGsfGkVykaveketgkivAvKkikkekakkkke..kkvlrEikilkklk...hpnivrlyevfeekdelylvleyveggeladllerkgsls 96 
                 ++   GeG+fGkV+ a++ +t+k +A+K+i+ke   ++ +  +++++E ++++++    hp+++ l  +f+++++++lv++++ gg+l++lle+kg l 
  KOO21770.1 224 VHGLCGEGTFGKVMMATKIDTQKVYAMKVIRKELLYSDATrvTQAIAEKQVMQQMAarpHPYVISLRFAFQTDENIFLVMDFMGGGDLHNLLEAKGRLR 322
                 66778****************************9888777789************999***************************************** PP

                 HHHHHHHHHHHHHHHHHHHHTTEE-SS-SGGGEEEETTTEEEE-SGTTSEESSSSCS.........BCTTTSCGGGS-HHHHTTSCBSHHHHHHHHHHH CS
     Pkinase  97 eeeakkiakqilegleylHskgiiHrDlKpeNiLidekgelKitDFGlakelesssk.........ltsfvgtseYlAPEvlkeneyskkvDvWslGvi 186
                 e+ +  +a++i+ +le++H++g+i+rDlKpeN++i  +g+lK+tDFGl+k+l   +          + +++gt+eY+APEvl ++eys +vD+W+ G++
  KOO21770.1 323 EAWVVVYAAEIALALEHVHAHGVIFRDLKPENVMIGVDGHLKLTDFGLSKQLGDVNAdgekqkkrgTATICGTPEYIAPEVLMGREYSYEVDWWTFGCV 421
                 ****************************************************99877888999************************************ PP

                 HHHHHHSS-STTTSSHHHHHHHHHHTHHHHHHHCTSHH...HH.HTTS-HHHHHHHHHHT-SSGCCSTTHH CS
     Pkinase 187 lyelltgkppfsgekgkekvekeldqlekilkilgetkeklpe.aseiseeakdllkkllkkdpkkRltae 256
                 lye++ gk pf+ + +  +  +++++    +        k+   ++ +s +++dll+kl+++dp+ Rl+ +
  KOO21770.1 422 LYEMVHGKRPFR-SVDMGSLINMIKK----C--------KITFdDECCSATLQDLLHKLMTVDPSARLGSA 479
                 ************.3333334444444....2........333404556********************944 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 1
                  -SGTTSEESSSSCSBCTTTSCGGGS-HHHHTT CS
     Pkinase  140 tDFGlakelessskltsfvgtseYlAPEvlke 171 
                  +DFG + e+++   +++++ t+ Yl +E l++
  KOO21770.1 1308 SDFGAVYEMRRV--MNKRIHTRVYLWNEALGG 1337
                  699999999994..7999******99999965 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  133.9   0.0     2e-42     6e-39       7     250 ..     228     476 ..     222     482 .. 0.88

  Alignments for each domain:
  == domain 1  score: 133.9 bits;  conditional E-value: 2e-42
                  EEEESSEEEEEEEEETTTTSSEEEEEEEEESTTSSHHHHHHHHHHHHHHHTS...-BTTB--EEEEEESSSSEEEEEE--TTEBHHHHHHHTCTTTSB CS
  Pkinase_Tyr   7 lGeGafGkVvegtlkgekekkevkVavKtlkeeateeekeelleeakimkkl...khpnivkllgvctkeepllivteyvkgGdLlkfLrkkekeklt 101
                   GeG+fGkV+++t  ++++   +kV+ K l  +   +  ++ + e ++m+++    hp +++l  +   +e++++v++++ gGdL++ L++k   +l+
   KOO21770.1 228 CGEGTFGKVMMATKIDTQKVYAMKVIRKELLYSDATR-VTQAIAEKQVMQQMaarPHPYVISLRFAFQTDENIFLVMDFMGGGDLHNLLEAK--GRLR 322
                  69************99999999999999995544444.6788888888888765579*********************************98..9*** PP

                  HHHHHHHHHHHHHHHHHHHHTTEEEST-SGGGEEEEETTEEEE-STTTHEET...TTSSEE.EETTSST..SGGGGS-HHHHHHSEEEHHHHHHHHHH CS
  Pkinase_Tyr 102 lkdllsfalqvAkGmeyLeskklvHrdlaarNvLlsenkvvkisDfGLardi...ekddey.vkkeeak..lpvkWmapEslkekkftsksDvWsfGv 193
                    +++ +a+++A ++e+++++ ++ rdl   Nv++  + + k++DfGL++++   + d e  +k+++a+     +++apE+l+ ++++ + D W fG 
   KOO21770.1 323 EAWVVVYAAEIALALEHVHAHGVIFRDLKPENVMIGVDGHLKLTDFGLSKQLgdvNADGEKqKKRGTATicGTPEYIAPEVLMGREYSYEVDWWTFGC 420
                  **************************************************9954222333313333333223468*********************** PP

                  HHHHHHTTSSGTTTTSHHHHHHHHHHTTEES-BBTTSBHHHHHHHHHHT-SSGGGS- CS
  Pkinase_Tyr 194 llwEiftlgespypglkneevleklkegkrlekpekcpeelyelmkkcweedpeeRp 250
                  +l+E++  g++p+++++  ++++++k+ k     e c+++l++l++k ++ dp+ R 
   KOO21770.1 421 VLYEMVH-GKRPFRSVDMGSLINMIKKCKITFDDECCSATLQDLLHKLMTVDPSARL 476
                  ******9.**********************************************996 PP

>> SnoaL  SnoaL-like polyketide cyclase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.2   0.0   8.5e-14   2.5e-10      38     126 .]     824     928 ..     817     928 .. 0.91
   2 ?   -3.7   0.0       3.2   9.6e+03      53      89 ..    1136    1171 ..    1113    1178 .. 0.63

  Alignments for each domain:
  == domain 1  score: 40.2 bits;  conditional E-value: 8.5e-14
                 CHHHHHHHHHHHHHHHCTTCEE....EEEEEEEETTEEEEEEEEEEEESSEB.TT..........BE-TT-EEEEEEEEEEEEET.TEEEEEEEEECHH CS
       SnoaL  38 rGlegfrafveelfkafPDlkv....evedlvaegdkvaarltftGthtgef.lG..........ipptGkkvkfeeitllrved.GkIveewdviDll 120
                  G+ ++ ++ + l+ afPDl++    +++++  e  +v + +++ Gth g++ +G          +pp+G +v  +++ +  ++  GkIv++  ++D++
  KOO21770.1 824 SGARAYLERRRVLLIAFPDLHFnmfeQTTKTEGERTTVFTSWQWAGTHLGPYtIGaqnedddeveMPPSGARVHTHGVSVDVFSAhGKIVDHSVFYDEA 922
                 688889999999999*******87777788888999***************834699**************************999************* PP

                 HHHHHC CS
       SnoaL 121 gllrQl 126
                 ++ +Ql
  KOO21770.1 923 AIRAQL 928
                 *****8 PP

  == domain 2  score: -3.7 bits;  conditional E-value: 3.2
                  HCTTCEEEEEEEEEETTEEEEEEEEEEEESSEBTTBE CS
       SnoaL   53 afPDlkvevedlvaegdkvaarltftGthtgeflGip 89  
                   f + +++ ed  a  +  a +++ +Gt++g+ +G p
  KOO21770.1 1136 VF-EAHMSGEDANATAPSEAPHVSPNGTPQGAPHGAP 1171
                  44.5555566666666666777788899998888844 PP

>> PAS_9  PAS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.8   0.0    0.0055        16       9      60 ..     605     677 ..     598     747 .. 0.75
   2 ?    0.1   0.0      0.32   9.7e+02      46      93 ..     920     975 ..     903     982 .. 0.79
   3 ?    0.8   0.0      0.19   5.7e+02      10      58 ..    1076    1131 ..    1071    1148 .. 0.65
   4 !   20.4   0.0   1.6e-07   0.00047       3      84 ..    1264    1348 ..    1262    1357 .. 0.81

  Alignments for each domain:
  == domain 1  score: 5.8 bits;  conditional E-value: 0.0055
       PAS_9   9 pdgrilyaNeaalrllGys...peevlgksitdlf....vtdpeanerlraaleqgrk..............k 60 
                 + g i  +++++ r lGy+   ++++lg+s+ d +    v++++ +++++a+ ++ +               +
  KOO21770.1 605 SRGAIWAISNSLVRALGYNqlgKQQLLGRSMLDDQgaslVEAADLEKFVDAFEKAREAlddclaqvaqkqgkE 677
                 678899***********99999*********999977775555555555555554443444444444455542 PP

  == domain 2  score: 0.1 bits;  conditional E-value: 0.32
       PAS_9  46 anerlraaleqgrk........kerevevvlirkngetfwvlltaspvkdddgelv 93 
                 ++  +ra+le +++        +  ++ ++++ +n++++ v+l ++  ++ +g+ v
  KOO21770.1 920 DEAAIRAQLELKTTgsrgrdtrSIVRRALDNRASNNSPIIVQLYLTVRRQLGGGDV 975
                 566677777777777777889999999****************9999988755544 PP

  == domain 3  score: 0.8 bits;  conditional E-value: 0.19
       PAS_9   10 dgrilyaNeaalrllGyspeevlgksitdlf.......vtdpeanerlraaleqgr 58  
                  +  i+ +++a++r+l   ++ +l  ++  ++        t p  +e l++a+ +g+
  KOO21770.1 1076 QTSIILCSNAFARILHRPADKLLRADLCKILsqalsstTTGPAVAEGLAEAVARGE 1131
                  55799**********98877766654333333444444466666666666655555 PP

  == domain 4  score: 20.4 bits;  conditional E-value: 1.6e-07
       PAS_9    3 gilidnpdg...rilyaNeaalrllGyspeevlgksitdlfvtdpeanerlraaleqgrk.kerevevvlirkngetfwvlltasp 84  
                  gi i ++ g   ++++++e++ rl G+++ + +g++++ l+ +d+++   + ++ + + k +  +v + +    ge fw+llt++p
  KOO21770.1 1264 GISISDMRGedaPLVWISEGFYRLNGFTRVQAIGRNCRFLQ-SDASDFGAVYEMRRVMNKrIHTRVYLWNEALGGEGFWTLLTLRP 1348
                  677755566665999**************************.555555555555555555778999999999999********998 PP

>> Kinase-like  Kinase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.6   0.0   2.1e-05     0.062     147     267 ..     333     448 ..     245     475 .. 0.70
   2 ?    3.1   0.0     0.016        48     225     276 ..    1252    1303 ..    1242    1306 .. 0.91

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 2.1e-05
  Kinase-like 147 lllTlqlirlaanLqakglvhgkftvdnllldekgglmlggftaLvragtkvvlseve......kgfaPpEllgsrggytrknktkmthkldaWqlGl 238
                    l l       + +a+g++  +++++n++   +g l+l++f+   + g+     e +           pE ++           ++++++d W+ G 
   KOO21770.1 333 IALAL------EHVHAHGVIFRDLKPENVMIGVDGHLKLTDFGLSKQLGDVNADGEKQkkrgtaTICGTPEYIAPEVL----MGREYSYEVDWWTFGC 420
                  44433......68899**************************754444433332222222222144567888888777....3559************ PP

  Kinase-like 239 viyriwclklPltlateeakeewkfklck 267
                  v y +   k P+  +  +  ++   k+ck
   KOO21770.1 421 VLYEMVHGKRPFRSVDMGSLIN-MIKKCK 448
                  ************9998888888.777776 PP

  == domain 2  score: 3.1 bits;  conditional E-value: 0.016
  Kinase-like  225 tkmthkldaWqlGlviyriwclklPltlateeakeewkfklckkipekvkaL 276 
                   t  t +l a q+G++i  +   ++Pl  + e++     f +++ i+ + ++L
   KOO21770.1 1252 TALTTALHASQVGISISDMRGEDAPLVWISEGFYRLNGFTRVQAIGRNCRFL 1303
                   678999***************************9999*********999988 PP

>> Pkinase_fungal  Fungal protein kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   0.0    0.0001      0.31     321     396 ..     339     414 ..     319     426 .. 0.83

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.0001
  Pkinase_fungal 321 sLflkagiLHrDiSenNilitdskkegerkglLiDLDlakelsddssesga......rertGTleFmaievlkgeeHsyrhD 396
                       +   g++ rD   +N++i       + +  L D+ l k+l+d++++ ++       +  GT+e++a evl+g e sy  D
      KOO21770.1 339 HVH-AHGVIFRDLKPENVMIG-----VDGHLKLTDFGLSKQLGDVNADGEKqkkrgtATICGTPEYIAPEVLMGREYSYEVD 414
                     555.78999************.....788899***********987776444445557799************999999877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1489 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       452  (0.0252106); expected 358.6 (0.02)
Passed bias filter:                      390  (0.0217525); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.86u 0.30s 00:00:01.15 Elapsed: 00:00:00.45
# Mc/sec: 9881.24
//
Query:       KOO21771.1  [L=447]
Description: nxn protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (447 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       455  (0.0253779); expected 358.6 (0.02)
Passed bias filter:                      404  (0.0225333); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.49u 0.24s 00:00:00.73 Elapsed: 00:00:00.40
# Mc/sec: 3346.18
//
Query:       KOO21772.1  [L=364]
Description: eukaryotic translation initiation factor 3 subunit h-like protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.5e-14   53.3   0.0    4.4e-14   52.5   0.0    1.4  1  JAB        JAB1/Mov34/MPN/PAD-1 ubiquitin protease
  ------ inclusion threshold ------
       0.16   12.2   2.2       0.31   11.3   0.2    2.2  2  UCR_hinge  Ubiquinol-cytochrome C reductase hinge protein
       0.41   11.1   4.4       0.81   10.2   4.4    1.4  1  ZapB       Cell division protein ZapB


Domain annotation for each model (and alignments):
>> JAB  JAB1/Mov34/MPN/PAD-1 ubiquitin protease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.5   0.0   7.4e-18   4.4e-14       4     114 ..      36     145 ..      33     149 .. 0.85

  Alignments for each domain:
  == domain 1  score: 52.5 bits;  conditional E-value: 7.4e-18
                 CEEEEEHHHHHHHHHHHHHHHHHTS--EEEEEEEESSSEEEEEEEEEEESEEEESSECE...EEEEHHHHHHHHHHHHHHHCTTSEEEEEEEESSSS-S CS
         JAB   4 qavhleslvllkildhalrtekeeeevmGlliGelnddttveitnvfalpfeetekdvd...avsldqeylekksellkklrgrervvGWYhshpditv 99 
                   v l++lv+lki++h ++       v G l+G+  +  t+e+tn+f +p +e+ +  +     + + ey  ++++ l +++ + ++vGWY+s+    +
  KOO21772.1  36 SVVELDALVVLKIIKHCQQALPA--FVTGQLLGLDVGP-TLEVTNSFPFPGKESVNGESsamDDDASSEYQIEMMRCLREVNVDNNTVGWYQSTYFS-S 130
                 6799*******************..*************.**********98887544330003445556667888999999999**********999.* PP

                 S--HHHHHHHHHHHH CS
         JAB 100 wlsevdvrtqalyqr 114
                 +++e++v+tq+ yq 
  KOO21772.1 131 FIDEQCVETQFNYQS 145
                 *************97 PP

>> UCR_hinge  Ubiquinol-cytochrome C reductase hinge protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.2   5.3e-05      0.31      17      57 ..     100     151 ..      90     153 .. 0.86
   2 ?   -0.5   0.2      0.25   1.5e+03      15      35 ..     263     283 ..     250     293 .. 0.68

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 5.3e-05
   UCR_hinge  17 kklkkhyeeCveRVksrse...........aeteedCveelfdlvhcvdhCv 57 
                 ++++ ++ +C + V+ +++           +   e+Cve  f +++ + +Cv
  KOO21772.1 100 SEYQIEMMRCLREVNVDNNtvgwyqstyfsSFIDEQCVETQFNYQSNLKNCV 151
                 5677788899999999999999999999997888*****************9 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 0.25
   UCR_hinge  15 kCkklkkhyeeCveRVksrse 35 
                 + ++  +hye+ v+R k  ++
  KOO21772.1 263 QESSKLQHYERAVQRQKGTQS 283
                 445567899999999887765 PP

>> ZapB  Cell division protein ZapB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   4.4   0.00014      0.81       9      55 ..     247     293 ..     246     302 .. 0.87

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.00014
        ZapB   9 LEskiqkaidtitlLqmeieeLkeeneelkeenreleeeneqlkeer 55 
                 LE++ q +i+ i+ Lq+e ++L++  ++ ++++   ++ + + k+e 
  KOO21772.1 247 LEKQLQLLIECIEDLQQESSKLQHYERAVQRQKGTQSSYLAKKKAEA 293
                 9*****************************99988888877777775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (364 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       819  (0.0456802); expected 358.6 (0.02)
Passed bias filter:                      536  (0.0298957); expected 358.6 (0.02)
Passed Vit filter:                        47  (0.00262145); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.46u 0.25s 00:00:00.71 Elapsed: 00:00:00.39
# Mc/sec: 2834.48
//
Query:       KOO21773.1  [L=175]
Description: hypothetical protein Ctob_002822 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.2e-11   43.5   0.1      1e-10   41.4   0.1    1.8  2  TRM       N2,N2-dimethylguanosine tRNA methyltransferase


Domain annotation for each model (and alignments):
>> TRM  N2,N2-dimethylguanosine tRNA methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.4   0.0     0.028     5e+02      74     100 ..      41      67 ..      35      78 .. 0.83
   2 !   41.4   0.1   5.6e-15     1e-10     116     165 ..     119     168 ..      99     172 .. 0.86

  Alignments for each domain:
  == domain 1  score: -0.4 bits;  conditional E-value: 0.028
                 EEEEEEE-S-HHHHHHHHHHHHHTT-- CS
         TRM  74 vkevlaNDisekAvelikeNvklneve 100
                 + ev a D+     ++i +N+ ln  +
  KOO21773.1  41 AIEVTAADLDAGCCAMIARNAALNGFA 67 
                 5689999999999*******9999866 PP

  == domain 2  score: 41.4 bits;  conditional E-value: 5.6e-15
                 --SS-EEEEEE--SS--GGGHHHHHHHEEEEEEEEEEE--HHHHTTSSHH CS
         TRM 116 ekkkrfdviDlDPfGspapfldsavqsvkekglLlvTaTDtavLaGaspe 165
                  +   fd++ +DPfGs +pfld+ +  ++++++++vTaTDt+vL  ++pe
  KOO21773.1 119 LHAPPFDFVHVDPFGSCVPFLDTLASRAAHGSVVSVTATDTSVLFANYPE 168
                 46678****************************************99998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (175 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       282  (0.0157287); expected 358.6 (0.02)
Passed bias filter:                      188  (0.0104858); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.25s 00:00:00.64 Elapsed: 00:00:00.41
# Mc/sec: 1271.43
//
Query:       KOO21774.1  [L=652]
Description: hypothetical protein Ctob_002823 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (652 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       511  (0.0285013); expected 358.6 (0.02)
Passed bias filter:                      395  (0.0220313); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.55u 0.25s 00:00:00.80 Elapsed: 00:00:00.40
# Mc/sec: 4847.33
//
Query:       KOO21775.1  [L=227]
Description: hypothetical protein Ctob_002820 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
     0.0076   16.3   1.5          1    9.3   0.0    2.1  2  Abhydrolase_9_N  Alpha/beta-hydrolase family N-terminus


Domain annotation for each model (and alignments):
>> Abhydrolase_9_N  Alpha/beta-hydrolase family N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.3   0.0   5.8e-05         1      16      64 ..       2      50 ..       1      62 [. 0.77
   2 !    6.2   0.3    0.0005         9      28      89 ..     124     197 ..     116     223 .. 0.79

  Alignments for each domain:
  == domain 1  score: 9.3 bits;  conditional E-value: 5.8e-05
  Abhydrolase_9_N 16 vsGlsaaiGYglGvllawlvrrllrlpepsrrvrrrlrlalavvalvvl 64
                     v+++  a+GY+l + +++l+rr+ ++p+ps+ +  r ++ ++ +a +++
       KOO21775.1  2 VVAIVLAAGYMLVCDAHALLRRVPASPPPSPLADGRDEMSTVQAASAIM 50
                     789********************98777777766665555555554444 PP

  == domain 2  score: 6.2 bits;  conditional E-value: 0.0005
  Abhydrolase_9_N  28 Gvllawlvrrllr............lpepsrrvrrrlrlalavvalvvllvalvlaarwQrelralmgaeplga 89 
                      +++l+w+v++  +            ++ ++  + + + +a+a +a+v +++ +++a++ Q++ +a  + e+++a
       KOO21775.1 124 AAFLRWVVEVTAHvaepdasltaneSDVTAVDAASDADIATAGMAAVRAVASVLRAVHEQQTAEAEAKREAAEA 197
                      5788899888887787777776665555556666699999********************99888777766665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (227 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       790  (0.0440627); expected 358.6 (0.02)
Passed bias filter:                      419  (0.02337); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.24s 00:00:00.69 Elapsed: 00:00:00.41
# Mc/sec: 1678.38
//
Query:       KOO21776.1  [L=147]
Description: hypothetical protein Ctob_002821 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (147 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       255  (0.0142228); expected 358.6 (0.02)
Passed bias filter:                      236  (0.013163); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.23s 00:00:00.60 Elapsed: 00:00:00.39
# Mc/sec: 1126.40
//
Query:       KOO21777.1  [L=3063]
Description: hypothetical protein Ctob_002826, partial [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.6e-06   27.7  25.1        3.4    7.8   0.0   11.3 12  p25-alpha  p25-alpha
  ------ inclusion threshold ------
       0.12   13.1   5.6        5.7    7.7   0.1    4.4  4  DnaI_N     Primosomal protein DnaI N-terminus
       0.37   10.7   1.7         51    3.8   0.0    4.1  5  DUF4041    Domain of unknown function (DUF4041)


Domain annotation for each model (and alignments):
>> p25-alpha  p25-alpha
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.9   0.2     0.037   2.2e+02      15      83 ..      83     160 ..      67     173 .. 0.64
   2 ?   -3.3   0.0       1.5   9.2e+03      97     130 ..     681     714 ..     674     725 .. 0.81
   3 ?    2.6   0.1     0.022   1.3e+02       2      56 ..     821     879 ..     820     916 .. 0.78
   4 !    5.0   0.1    0.0043        26       3      69 ..    1189    1259 ..    1187    1300 .. 0.73
   5 ?    1.5   0.5      0.05     3e+02       3      52 ..    1532    1585 ..    1530    1597 .. 0.81
   6 ?   -4.0   0.0       2.4   1.4e+04      54      78 ..    1773    1797 ..    1772    1803 .. 0.80
   7 !    7.8   0.0   0.00057       3.4       4      73 ..    1891    1965 ..    1888    2002 .. 0.74
   8 ?   -1.7   0.1       0.5     3e+03      67     102 ..    2008    2042 ..    2005    2053 .. 0.84
   9 ?    2.1   0.0     0.033     2e+02       3      56 ..    2246    2303 ..    2244    2356 .. 0.78
  10 !    7.1   0.1   0.00097       5.8       3      54 ..    2603    2658 ..    2601    2707 .. 0.82
  11 ?   -0.7   0.0      0.24   1.4e+03      53      84 ..    2841    2871 ..    2838    2881 .. 0.76
  12 !    5.1   0.0    0.0038        23       3      55 ..    2959    3015 ..    2958    3043 .. 0.84

  Alignments for each domain:
  == domain 1  score: 1.9 bits;  conditional E-value: 0.037
   p25-alpha  15 ktgkemdnknfsKlckDckiidkkvtstdvDiiFsKvk............aksarkitfeqfkealeelaekkfkkkkkee 83 
                 ++g +m +++++ ++kD k+    +  t++  +F++v             ak+++++ +++f eal+  a k+++ +k+ +
  KOO21777.1  83 TEGFTMSQREWVQFVKDMKL---PIPITEINDVFRRVDradkeereknpkAKNDKQMVLAEFLEALTRAAVKWMNVSKQGK 160
                 45667777777777777776...4555555555555433323333333338999999999999999999999775555444 PP

  == domain 2  score: -3.3 bits;  conditional E-value: 1.5
   p25-alpha  97 PklqgvtkatkagavdrltDtskYTGshkerfDe 130
                 P  ++  +   +gav    D+s+ TG +  + De
  KOO21777.1 681 PRHSNLSQLDVKGAVTTAQDKSESTGNAGSNYDE 714
                 66667777888999999*********99888886 PP

  == domain 3  score: 2.6 bits;  conditional E-value: 0.022
   p25-alpha   2 eaFkaFakfg....dtkktgkemdnknfsKlckDckiidkkvtstdvDiiFsKvkaksa 56 
                 ++F  +ak g    +++ t+ +m++ +++ l+ D+++ + ++  t+v  iF++  +  +
  KOO21777.1 821 SVFDYYAKSGtagsSSAGTAMTMQQTELQNLALDVGLASAQFSMTRVINIFKRADQVDD 879
                 5799999998664444557778889999***********************99876555 PP

  == domain 4  score: 5.0 bits;  conditional E-value: 0.0043
   p25-alpha    3 aFkaFakfg....dtkktgkemdnknfsKlckDckiidkkvtstdvDiiFsKvkaksarkitfeqfkeale 69  
                  +F+ +ak g    +++++  +m++ +++ l+ Dc++ ++++  t+v  +F++  +  +  +  +  k++++
  KOO21777.1 1189 IFTYYAKSGtagsTSANALLTMQQTELQNLALDCQLCNEQFSMTRVINVFERADQVDDTFVVSKADKRVVK 1259
                  688888888433222334458******************************98876665555555555555 PP

  == domain 5  score: 1.5 bits;  conditional E-value: 0.05
   p25-alpha    3 aFkaFakfg....dtkktgkemdnknfsKlckDckiidkkvtstdvDiiFsKvk 52  
                  +F  +ak g    +++ ++ +m++ +++ l+ Dc+  +k +   ++ +iF +  
  KOO21777.1 1532 IFDFYAKSGtagsSSAGKALTMQSTELTNLALDCDFATKDFLMARINTIFMRAD 1585
                  57777877755333444667899***************************9865 PP

  == domain 6  score: -4.0 bits;  conditional E-value: 2.4
   p25-alpha   54 ksarkitfeqfkealeelaekkfkk 78  
                  ++a +i+f++f  +l  +   k+++
  KOO21777.1 1773 EGAETIDFDEFLVCLGLCGHIKYEE 1797
                  5789**********99998887754 PP

  == domain 7  score: 7.8 bits;  conditional E-value: 0.00057
   p25-alpha    4 FkaFakfg....dtkktgkemdnknfsKlckDckiidkkvtstdvDiiFsKvkaksa.rkitfeqfkealeelae 73  
                  F  +a+ g     ++k++++m++ +++ l+ Dc+i +k +   +v  iF++  +  +  k++ ++   +l e a+
  KOO21777.1 1891 FAYYARSGsagsGSAKSAETMQQTELTDLALDCDIASKDFPMARVNNIFERADQVDDtFKVSASDKRVVLGETAK 1965
                  6666666644445677999*******************************9886555456666666666666665 PP

  == domain 8  score: -1.7 bits;  conditional E-value: 0.5
   p25-alpha   67 aleelaekkfkkkkkeeeleliekliegkgPklqgv 102 
                  +le l +k+  +k k ++l +++k+ie++ P++q v
  KOO21777.1 2008 CLETLLKKHLLTKAKTDTLAKVKKMIEKD-PEVQLV 2042
                  78999999999999999999999999998.998865 PP

  == domain 9  score: 2.1 bits;  conditional E-value: 0.033
   p25-alpha    3 aFkaFakfg....dtkktgkemdnknfsKlckDckiidkkvtstdvDiiFsKvkaksa 56  
                  +F ++ak g     ++++  +m++ +++ l+ Dc++ + ++   +v  iF++  +  +
  KOO21777.1 2246 IFIHYAKSGtagsVSATAVLTMQQTELVDLALDCGLTSSTFSMARVQNIFERADQVDD 2303
                  6778888873332222344589*****************************9876555 PP

  == domain 10  score: 7.1 bits;  conditional E-value: 0.00097
   p25-alpha    3 aFkaFakfg....dtkktgkemdnknfsKlckDckiidkkvtstdvDiiFsKvkak 54  
                  +F  +ak g    +++ t+ +m++ +++ l+ Dc++ ++++  t+v  iF++  + 
  KOO21777.1 2603 IFDMYAKSGtagsSSAGTAMTMQQTELQNLALDCGLSNEQFSMTRVINIFKRADQV 2658
                  688899988664444557778889999***********************997655 PP

  == domain 11  score: -0.7 bits;  conditional E-value: 0.24
   p25-alpha   53 aksarkitfeqfkealeelaekkfkkkkkeee 84  
                  + +a +i+f++f  al  + + kf++ +ke +
  KOO21777.1 2841 QDGAETIDFDEFVIALALCGSIKFEE-VKEAT 2871
                  56899**************9999954.44443 PP

  == domain 12  score: 5.1 bits;  conditional E-value: 0.0038
   p25-alpha    3 aFkaFakfg....dtkktgkemdnknfsKlckDckiidkkvtstdvDiiFsKvkaks 55  
                  +F ++ak g    ++++++ +m++ +++ l+ Dc+i +k +   +v  iF+   + +
  KOO21777.1 2959 IFARYAKAGsagsTSANAALTMQQTELTDLALDCDIASKDFPMARVNNIFENADQAN 3015
                  689999999554334446679*****************************9876655 PP

>> DnaI_N  Primosomal protein DnaI N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.0   0.0      0.24   1.4e+03       4      48 ..     962    1006 ..     960    1013 .. 0.86
   2 ?    7.7   0.1   0.00095       5.7       7      53 ..    1311    1357 ..    1308    1361 .. 0.85
   3 ?    1.1   0.1      0.11   6.3e+02       7      46 ..    2012    2051 ..    2009    2057 .. 0.81
   4 ?    2.1   0.0     0.054   3.2e+02       6      43 ..    2369    2406 ..    2366    2412 .. 0.83

  Alignments for each domain:
  == domain 1  score: -0.0 bits;  conditional E-value: 0.24
                  TTXSXXXXSXXXHHHHHHHHHHHHHTTXHHHHHHHHHSTTTC-HH CS
      DnaI_N    4 igeslkkllkkrkfekryeklkeevlsdpeVqaFlqehqeeltee 48  
                  + e l++++ k++  + + k+k+++l dpe     +e ++ l +e
  KOO21777.1  962 LHELLHNVILKKAKTDGLAKVKKQLLVDPECVRVYKERRAALAKE 1006
                  56788999999999999******************9999988876 PP

  == domain 2  score: 7.7 bits;  conditional E-value: 0.00095
                  SXXXXSXXXHHHHHHHHHHHHHTTXHHHHHHHHHSTTTC-HHHHHHT CS
      DnaI_N    7 slkkllkkrkfekryeklkeevlsdpeVqaFlqehqeelteeaiers 53  
                   l+k + kr+ ++++ k+ +++ ++peVqa +++++ el++  + +s
  KOO21777.1 1311 LLNKSILKRAKSDNLAKTLKRIKKEPEVQAVIARNKPELHKIFLSKS 1357
                  57777788888899999********************9998776666 PP

  == domain 3  score: 1.1 bits;  conditional E-value: 0.11
                  SXXXXSXXXHHHHHHHHHHHHHTTXHHHHHHHHHSTTTC- CS
      DnaI_N    7 slkkllkkrkfekryeklkeevlsdpeVqaFlqehqeelt 46  
                   lkk l +++  + + k+k+ + +dpeVq  l+  +++l+
  KOO21777.1 2012 LLKKHLLTKAKTDTLAKVKKMIEKDPEVQLVLRPRKAQLK 2051
                  56776667777788999999999******99998888775 PP

  == domain 4  score: 2.1 bits;  conditional E-value: 0.054
                  XSXXXXSXXXHHHHHHHHHHHHHTTXHHHHHHHHHSTT CS
      DnaI_N    6 eslkkllkkrkfekryeklkeevlsdpeVqaFlqehqe 43  
                  + l+k l k++ +++++k++++v++ peVqa l++   
  KOO21777.1 2369 SLLQKNLLKNAKRDKLSKVRKAVMELPEVQAALKAAAP 2406
                  56888777888899****************99987665 PP

>> DUF4041  Domain of unknown function (DUF4041)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.8   0.0    0.0086        51      15      37 ..     610     632 ..     607     636 .. 0.90
   2 ?   -1.4   0.0      0.36   2.1e+03      21      43 ..     810     832 ..     809     835 .. 0.89
   3 ?   -0.8   0.2      0.24   1.5e+03      14      32 ..    1316    1334 ..    1314    1337 .. 0.88
   4 ?   -4.0   0.0       2.5   1.5e+04      28      45 ..    2048    2065 ..    2047    2066 .. 0.83
   5 ?    2.1   0.0      0.03   1.8e+02      23      38 ..    2756    2771 ..    2753    2776 .. 0.85

  Alignments for each domain:
  == domain 1  score: 3.8 bits;  conditional E-value: 0.0086
     DUF4041  15 iskVkynnietlekRIeksfeai 37 
                 + kV    +et +kR++k+fe +
  KOO21777.1 610 VDKVALAHFETHKKRLKKAFEEL 632
                 67999999************986 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 0.36
     DUF4041  21 nnietlekRIeksfeainklgkt 43 
                 n ++ + +R+ ++f+ ++k g++
  KOO21777.1 810 NTYHEVFERLSSVFDYYAKSGTA 832
                 7899999************9986 PP

  == domain 3  score: -0.8 bits;  conditional E-value: 0.24
     DUF4041   14 aiskVkynnietlekRIek 32  
                  ++++ k +n+ ++ kRI+k
  KOO21777.1 1316 ILKRAKSDNLAKTLKRIKK 1334
                  6788899**********98 PP

  == domain 4  score: -4.0 bits;  conditional E-value: 2.5
     DUF4041   28 kRIeksfeainklgktmn 45  
                   +++ +fe+++k  +tm 
  KOO21777.1 2048 AQLKACFEKLAKSDSTMT 2065
                  68999*******988885 PP

  == domain 5  score: 2.1 bits;  conditional E-value: 0.03
     DUF4041   23 ietlekRIeksfeain 38  
                  + ++++R++ksfe+++
  KOO21777.1 2756 MPQIKQRLQKSFETMA 2771
                  6799*********976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (3063 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       563  (0.0314016); expected 358.6 (0.02)
Passed bias filter:                      472  (0.0263261); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 1.31u 0.27s 00:00:01.58 Elapsed: 00:00:00.46
# Mc/sec: 20209.65
//
Query:       KOO21778.1  [L=4720]
Description: hypothetical protein Ctob_002824 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    0.00021   20.6  17.0       0.19   11.4   0.0   10.4 11  EF-hand_1      EF hand
  ------ inclusion threshold ------
      0.091   11.7   0.1       0.16   10.9   0.1    1.3  1  Asp2           Accessory Sec system GspB-transporter
       0.14   12.7   0.1       0.51   10.9   0.0    2.0  2  Abhydrolase_6  Alpha/beta hydrolase family
       0.17   11.8   0.0       0.41   10.6   0.0    1.5  1  UPF0227        Uncharacterised protein family (UPF0227)


Domain annotation for each model (and alignments):
>> EF-hand_1  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.6   0.1      0.11     5e+02      13      28 ..     900     915 ..     898     916 .. 0.90
   2 ?   -1.7   0.0      0.62   2.8e+03      17      26 ..    1097    1106 ..    1093    1108 .. 0.82
   3 ?   -0.9   0.1      0.34   1.5e+03      17      26 ..    1855    1864 ..    1854    1866 .. 0.85
   4 ?   -4.2   0.0       3.8   1.7e+04      16      25 ..    2222    2231 ..    2220    2232 .. 0.83
   5 ?    1.2   0.0     0.075   3.4e+02      13      27 ..    2409    2423 ..    2408    2425 .. 0.89
   6 ?    0.0   0.0      0.18     8e+02      11      28 ..    2755    2772 ..    2752    2773 .. 0.85
   7 ?    0.7   0.0      0.11   4.9e+02      16      27 ..    2922    2933 ..    2921    2935 .. 0.87
   8 ?    2.2   0.1     0.037   1.6e+02      13      27 ..    3308    3322 ..    3306    3324 .. 0.85
   9 !   11.4   0.0   4.1e-05      0.19       2      27 ..    3674    3699 ..    3673    3701 .. 0.86
  10 ?    0.1   0.1      0.17   7.6e+02      16      26 ..    4057    4067 ..    4055    4069 .. 0.88
  11 ?    2.0   0.1     0.041   1.8e+02      13      27 ..    4401    4415 ..    4401    4417 .. 0.84

  Alignments for each domain:
  == domain 1  score: 0.6 bits;  conditional E-value: 0.11
                 SSSEEEHHHHHHHHHH CS
   EF-hand_1  13 gdGkIdfeEfkellkk 28 
                 gd  ++f Ef+ell++
  KOO21778.1 900 GDNSLEFHEFLELLMR 915
                 8999*********986 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 0.62
                  EEHHHHHHHH CS
   EF-hand_1   17 IdfeEfkell 26  
                  +d+eEf+++l
  KOO21778.1 1097 VDYEEFLHVL 1106
                  8******987 PP

  == domain 3  score: -0.9 bits;  conditional E-value: 0.34
                  EEHHHHHHHH CS
   EF-hand_1   17 IdfeEfkell 26  
                  IdfeEf+ +l
  KOO21778.1 1855 IDFEEFLCIL 1864
                  9*****9876 PP

  == domain 4  score: -4.2 bits;  conditional E-value: 3.8
                  EEEHHHHHHH CS
   EF-hand_1   16 kIdfeEfkel 25  
                  ++d++E++ +
  KOO21778.1 2222 TVDYDEWCIC 2231
                  79*****976 PP

  == domain 5  score: 1.2 bits;  conditional E-value: 0.075
                  SSSEEEHHHHHHHHH CS
   EF-hand_1   13 gdGkIdfeEfkellk 27  
                  gdG +++ Ef+e+l 
  KOO21778.1 2409 GDGALELHEFLEALV 2423
                  9***********986 PP

  == domain 6  score: 0.0 bits;  conditional E-value: 0.18
                  TTSSSEEEHHHHHHHHHH CS
   EF-hand_1   11 kDgdGkIdfeEfkellkk 28  
                  k gdG +++ Ef+e++ +
  KOO21778.1 2755 KPGDGALELFEFLEAVVM 2772
                  679**********99865 PP

  == domain 7  score: 0.7 bits;  conditional E-value: 0.11
                  EEEHHHHHHHHH CS
   EF-hand_1   16 kIdfeEfkellk 27  
                  +I+f+Ef+ +l+
  KOO21778.1 2922 TINFDEFMVCLA 2933
                  7*******9986 PP

  == domain 8  score: 2.2 bits;  conditional E-value: 0.037
                  SSSEEEHHHHHHHHH CS
   EF-hand_1   13 gdGkIdfeEfkellk 27  
                  g+  Idf+Ef+ +l+
  KOO21778.1 3308 GNESIDFDEFVIALA 3322
                  7889******99885 PP

  == domain 9  score: 11.4 bits;  conditional E-value: 4.1e-05
                  HHHHHHHHTTTSSSEEEHHHHHHHHH CS
   EF-hand_1    2 lkeiFrefDkDgdGkIdfeEfkellk 27  
                  +k +F     D dG+++feE++++l+
  KOO21778.1 3674 VKGAFVTCQNDSDGFVTFEEWCSALA 3699
                  5668888889*************986 PP

  == domain 10  score: 0.1 bits;  conditional E-value: 0.17
                  EEEHHHHHHHH CS
   EF-hand_1   16 kIdfeEfkell 26  
                  ++dfeEf+ +l
  KOO21778.1 4057 FVDFEEFMVAL 4067
                  79*****9987 PP

  == domain 11  score: 2.0 bits;  conditional E-value: 0.041
                  SSSEEEHHHHHHHHH CS
   EF-hand_1   13 gdGkIdfeEfkellk 27  
                  g+  IdfeEf+ ll+
  KOO21778.1 4401 GNDSIDFEEFLLLLA 4415
                  6778******99987 PP

>> Asp2  Accessory Sec system GspB-transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.1   3.5e-05      0.16     353     400 ..     169     216 ..     152     221 .. 0.84

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 3.5e-05
        Asp2 353 eeeqlilsGlSMGtfgalyYgaklnphaivvgKPlvnlGtiaaneklk 400
                 + ++++ +G SMG ++a+  g  l++ ai+   P v lGt    +++ 
  KOO21778.1 169 KPREVVCMGSSMGGYAAIRAGLVLKASAIIAFSPQVLLGTADRASAMI 216
                 6789***********************************987777665 PP

>> Abhydrolase_6  Alpha/beta hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   0.00011      0.51      54     117 ..     155     221 ..     114     347 .. 0.74
   2 ?   -3.9   0.0       3.8   1.7e+04      63      78 ..    1827    1845 ..    1814    1944 .. 0.48

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00011
                    HHHHCCTT.......TTSEEEEEETCHHHHHHHHHHCC..EE.EEES-..----TTTS----TTHHHHHH CS
  Abhydrolase_6  54 aalldelaa.....gggpvvlvGHSlGGalalaaaplalvvg.vlldppptalpagllaaalelllalla 117
                    + ++del++      +++vv +G S+GG+ a +a+ ++  ++ ++ +p   ++ +g +++a +++l+ ++
     KOO21778.1 155 DSVIDELGKeidliKPREVVCMGSSMGGYAAIRAGLVLKASAiIAFSP---QVLLGTADRASAMILPMPT 221
                    4455555556666679999*************9555553333566666...3333333333222222222 PP

  == domain 2  score: -3.9 bits;  conditional E-value: 3.8
                     .TTSEEEEEETCHHH...H CS
  Abhydrolase_6   63 gggpvvlvGHSlGGa...l 78  
                     + + +++ G S GGa   +
     KOO21778.1 1827 DIRGAFVTGQSTGGAaggV 1845
                     3666677777777763331 PP

>> UPF0227  Uncharacterised protein family (UPF0227)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0     9e-05      0.41      44      91 ..     156     204 ..     145     208 .. 0.85

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 9e-05
     UPF0227  44 qalkeleklvaelgddnillvGssLGGyyatrlgerfglrq.vllnPal 91 
                  ++ el k +  +++++++ +Gss+GGy a r g   +  + + + P +
  KOO21778.1 156 SVIDELGKEIDLIKPREVVCMGSSMGGYAAIRAGLVLKASAiIAFSPQV 204
                 6799999*************************99988888855677765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (4720 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       543  (0.0302861); expected 358.6 (0.02)
Passed bias filter:                      453  (0.0252663); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 1.76u 0.29s 00:00:02.04 Elapsed: 00:00:00.52
# Mc/sec: 27259.29
//
Query:       KOO21779.1  [L=136]
Description: hypothetical protein Ctob_002825 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (136 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       368  (0.0205254); expected 358.6 (0.02)
Passed bias filter:                      247  (0.0137766); expected 358.6 (0.02)
Passed Vit filter:                        12  (0.000669307); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.26s 00:00:00.62 Elapsed: 00:00:00.41
# Mc/sec: 1004.19
//
Query:       KOO21780.1  [L=212]
Description: hypothetical protein Ctob_001124 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (212 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       685  (0.0382063); expected 358.6 (0.02)
Passed bias filter:                      508  (0.028334); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.44u 0.25s 00:00:00.69 Elapsed: 00:00:00.42
# Mc/sec: 1525.66
//
Query:       KOO21781.1  [L=204]
Description: kinase family protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.1e-15   57.6   0.0    1.6e-15   57.0   0.0    1.3  1  U-box          U-box domain
    0.00015   21.5   0.0    0.00026   20.8   0.0    1.3  1  zf-Nse         Zinc-finger of the MIZ type in Nse subunit
  ------ inclusion threshold ------
      0.013   15.6   0.0      0.023   14.8   0.0    1.5  1  zf-NOSIP       Zinc-finger of nitric oxide synthase-interacti
      0.046   12.9  12.5      0.056   12.6  12.5    1.1  1  Med3           Mediator complex subunit 3 fungal
       0.23   11.0   4.1       0.35   10.4   4.1    1.2  1  Peptidase_S30  Potyvirus P1 protease
       0.89    8.3   2.8       0.97    8.1   2.8    1.1  1  SAPS           SIT4 phosphatase-associated protein
        1.1    8.0   3.4        1.2    7.9   3.4    1.2  1  NPR3           Nitrogen Permease regulator of amino acid tran
        1.8    5.6   4.0        1.9    5.5   4.0    1.0  1  GREB1          Gene regulated by oestrogen in breast cancer
          3    6.5   7.3        3.6    6.3   7.3    1.2  1  Presenilin     Presenilin
        3.1    7.2   4.6        4.1    6.9   4.6    1.3  1  Sec62          Translocation protein Sec62
        4.3    6.6  19.9         24    4.2   0.0    2.4  2  Rtf2           Rtf2 RING-finger
        4.7    7.5   9.8         16    5.7   9.9    1.7  1  DUF4050        Protein of unknown function (DUF4050)


Domain annotation for each model (and alignments):
>> U-box  U-box domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.0   0.0   1.1e-18   1.6e-15       2      72 ..     131     200 ..     130     201 .. 0.97

  Alignments for each domain:
  == domain 1  score: 57.0 bits;  conditional E-value: 1.1e-18
                 SGGGB-TTT-SB-SSEEEETTTEEEEHHHHHHHHTT.SSB-TTT-SB--GGGSEE-HHHHHHHHHHHHHCT CS
       U-box   2 PdefldpitlelmkdPvilpsgvvvdrstiekhllsrdktdPftrepltqdqlipnlelKekIdefleekr 72 
                 Pd f++pit  lm+dPv +++g++++r +i  +l   ++t+P+t + l+   l pn +++  I ++ e++r
  KOO21781.1 131 PDHFICPITHSLMIDPVSAADGHMYERRAIVDWLVG-HSTSPMTGAELKVTTLFPNHTVRGFIRTWQEAQR 200
                 9**********************************9.*****************************99876 PP

>> zf-Nse  Zinc-finger of the MIZ type in Nse subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.8   0.0   1.7e-07   0.00026      12      53 ..     134     172 ..     126     181 .. 0.81

  Alignments for each domain:
  == domain 1  score: 20.8 bits;  conditional E-value: 1.7e-07
                 SB-TTTSSB-SSEEEESSS--EEEHHHHHHHCTTTS-EE-SC CS
      zf-Nse  12 lkCPltlqpfeePvtskkCpHvFEreaIlelikrkktvkCPv 53 
                 + CP+t + + +Pv   +  H++Er+aI++ +  + +   P+
  KOO21781.1 134 FICPITHSLMIDPVSA-ADGHMYERRAIVDWL--VGHSTSPM 172
                 56***********966.569**********99..55555555 PP

>> zf-NOSIP  Zinc-finger of nitric oxide synthase-interacting protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.8   0.0   1.5e-05     0.023      42      72 ..     135     165 ..     108     168 .. 0.86

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 1.5e-05
    zf-NOSIP  42 ccslslqacrdpvltedgylyekeaileyil 72 
                  c ++     dpv + dg++ye+ ai+++++
  KOO21781.1 135 ICPITHSLMIDPVSAADGHMYERRAIVDWLV 165
                 5777777788*****************9875 PP

>> Med3  Mediator complex subunit 3 fungal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6  12.5   3.7e-05     0.056     146     264 ..      18     135 ..       4     190 .. 0.48

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 3.7e-05
        Med3 146 astPtttatPgantktaakslpapnatatigtptnsaaaaattatttssqakkPrkPrqtkk..aaakaaakaqaqaqaq.aqaqqqvlanpnqvqtPi 241
                 a+ P +t++ + +++ a++++   ++ a+  +   +aa aa  a+   s+a k r+ + + k   +a+aaa+a a a+a  a a +   a+ ++ q   
  KOO21781.1  18 AQQPRATTARKGASEDATAQVEDAASLAAAAAR-ADAAMAALLAE-EESKAEKARRKKGKAKaeKKARAAARAEAEAKAAhAEAEE--HARNQAGQEAT 112
                 455655544444455555556664555554444.55666666663.4555555554444444122233333333333332022222..23333333332 PP

        Med3 242 aanamnnmnamraalpnptpsml 264
                 a+ a       +a++  p    +
  KOO21781.1 113 ASAAKAHAAKEAASVEEPPDHFI 135
                 22222222233344444444444 PP

>> Peptidase_S30  Potyvirus P1 protease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   4.1   0.00024      0.35       4      87 ..      52     139 ..      49     150 .. 0.52

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00024
  Peptidase_S30   4 eakvaerllrke..askikaekkgrvilrklsekqvkkkrekekreeeeerqflqlaaasivskitp..kttekvsktesvsfrtklk 87 
                    +a++a+ l + e  a+k++ +k ++  ++k+  + +++ ++k+++ e+ee++  q  +++++s+ +   +++++ ++    +f ++++
     KOO21781.1  52 DAAMAALLAEEEskAEKARRKKGKAKAEKKARAAARAEAEAKAAHAEAEEHARNQAGQEATASAAKAhaAKEAASVEEPPDHFICPIT 139
                    5677777777667444444444444445555555666666666667777776555555555444433003344444444445544443 PP

>> SAPS  SIT4 phosphatase-associated protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.1   2.8   0.00065      0.97     272     344 ..      42     169 ..       5     189 .. 0.38

  Alignments for each domain:
  == domain 1  score: 8.1 bits;  conditional E-value: 0.00065
        SAPS 272 s.....................deaskeesaesedltdkdedvsleesksakdenkesdesesdtaeesseededdasseesa..laeeteeklr.... 343
                                       +        ++e+ ++k+ + + e++++a + ++ ++++++ +aee+ ++++ ++++ ++a   a +++ +++    
  KOO21781.1  42 AslaaaaaradaamaallaeeeS--------KAEKARRKKGKAKAEKKARAAARAEAEAKAAHAEAEEHARNQAGQEATASAAkaHAAKEAASVEeppd 132
                 13333333333333322221111........11111111111111111111111111122222222222222222222222220022222222223444 PP

        SAPS 344 ....................................k 344
                                                     +
  KOO21781.1 133 hficpithslmidpvsaadghmyerraivdwlvghsT 169
                 4444444444444555555555555555555555555 PP

>> NPR3  Nitrogen Permease regulator of amino acid transport activity 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.9   3.4    0.0008       1.2      50     107 ..      65     122 ..      16     161 .. 0.60

  Alignments for each domain:
  == domain 1  score: 7.9 bits;  conditional E-value: 0.0008
        NPR3  50 kkkkskrkrssrskekkskesskksesssksesseekksskeseeseekesneeeeee 107
                 k +k +rk+ + + ekk +  ++++ + +++++++e+++++++ ++++++  + +  +
  KOO21781.1  65 KAEKARRKKGKAKAEKKARAAARAEAEAKAAHAEAEEHARNQAGQEATASAAKAHAAK 122
                 1122233332233333333333333333333333333333322222222222222222 PP

>> GREB1  Gene regulated by oestrogen in breast cancer
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.5   4.0    0.0013       1.9    1108    1264 ..      32     132 ..       4     176 .. 0.40

  Alignments for each domain:
  == domain 1  score: 5.5 bits;  conditional E-value: 0.0013
       GREB1 1108 eelqedgerpksnssavqstsdsvaadaaeessktspvkvekseskdavesglsskasakselseasaaaasaseeakspkasvtseeeeseeskek 1204
                  e+++ + e                                                           a+ a+a  +a    a++ +eee+++e+ ++
  KOO21781.1   32 EDATAQVEDA---------------------------------------------------------ASLAAAAARADAAMAALLAEEESKAEKARR 71  
                  1111111111.........................................................222222222222222222222222222222 PP

       GREB1 1205 ekeslsketesqlsleaseqkealdakasskssssssssssass.PssscslakavkrPpi 1264
                  +k +++ e+++++  +a  +++a++a+a+ +  +++  +++as+  +++++ a +v++Pp 
  KOO21781.1   72 KKGKAKAEKKARAAARAEAEAKAAHAEAEEHARNQAGQEATASAaKAHAAKEAASVEEPPD 132 
                  2222222222222222111111111111111122222222222112334444444444443 PP

>> Presenilin  Presenilin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.3   7.3    0.0024       3.6     270     299 ..      57     109 ..       7     154 .. 0.40

  Alignments for each domain:
  == domain 1  score: 6.3 bits;  conditional E-value: 0.0024
  Presenilin 270 e.......................seeeseeesseaessaeesseekeseess 299
                 +                       + + + ++++ea+++++e +e++++++ +
  KOO21781.1  57 AllaeeeskaekarrkkgkakaekKARAAARAEAEAKAAHAEAEEHARNQAGQ 109
                 01111111110000000101000011111111111111111111111111111 PP

>> Sec62  Translocation protein Sec62
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.9   4.6    0.0027       4.1      11      80 ..      54     124 ..      16     151 .. 0.57

  Alignments for each domain:
  == domain 1  score: 6.9 bits;  conditional E-value: 0.0027
       Sec62  11 vvralksekekkkskkkkeklkevkkkekaekvfkelkksqlalrveklkekekkkkkee..kkkkkkkkkk 80 
                 ++ al  e+e+k++k +++k k + + +ka+ + +++ +++ a   +++++++++ ++++   +k +  k+ 
  KOO21781.1  54 AMAALLAEEESKAEKARRKKGKAKAE-KKARAAARAEAEAKAAHAEAEEHARNQAGQEATasAAKAHAAKEA 124
                 55555444444444444333322222.222333332222222222222222222222222223444444444 PP

>> Rtf2  Rtf2 RING-finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.3  20.2      0.37   5.6e+02     178     244 ..      55     122 ..      33     132 .. 0.35
   2 ?    4.2   0.0     0.016        24      34      71 ..     133     169 ..     127     182 .. 0.80

  Alignments for each domain:
  == domain 1  score: -0.3 bits;  conditional E-value: 0.37
        Rtf2 178 lkarleeekak....kkkkkkakkkkkakakgskaeaeaaskssseas.esskagkkkekkkekkkrslaek 244
                 + a l ee++k    ++kk kak++kka+a+++    ++a++++++a+ e++  +++ ++ + + ++++a+k
  KOO21781.1  55 MAALLAEEESKaekaRRKKGKAKAEKKARAAAR----AEAEAKAAHAEaEEHARNQAGQEATASAAKAHAAK 122
                 333443333331111122222222222222222....22222222221111222222222222222222222 PP

  == domain 2  score: 4.2 bits;  conditional E-value: 0.016
        Rtf2  34 wklCaLsqepLkkPivadrlGkLYnkdavleaLldksk 71 
                  ++C +++  +  P+ a + G++Y + a++  L   s+
  KOO21781.1 133 HFICPITHSLMIDPVSAAD-GHMYERRAIVDWLVGHST 169
                 5789999999999986655.99**99999999987764 PP

>> DUF4050  Protein of unknown function (DUF4050)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.7   9.9     0.011        16      58     131 ..      70     144 ..       6     151 .. 0.60

  Alignments for each domain:
  == domain 1  score: 5.7 bits;  conditional E-value: 0.011
     DUF4050  58 vrkkekkerep.seaesasseesssssealeeqsaessssssasatattspas.....seeseeeesvetlvPvappllp 131
                 +rkk k + e+ ++a+++ ++e++ ++ ++ee+  +++ +++++++a     +     + +s ee +++ ++P++++l+ 
  KOO21781.1  70 RRKKGKAKAEKkARAAARAEAEAKAAHAEAEEHARNQAGQEATASAA-----KahaakEAASVEEPPDHFICPITHSLMI 144
                 22222222111111111111111111122222222222222222222.....233445777888999999******9975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (204 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2589  (0.144403); expected 358.6 (0.02)
Passed bias filter:                      911  (0.0508115); expected 358.6 (0.02)
Passed Vit filter:                       208  (0.0116013); expected 17.9 (0.001)
Passed Fwd filter:                        36  (0.00200792); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.69u 0.33s 00:00:01.02 Elapsed: 00:00:00.45
# Mc/sec: 1355.41
//
Query:       KOO21782.1  [L=524]
Description: ipt tig domain-containing protein, partial [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.7e-44  148.4   4.3    9.2e-09   35.3   0.1    5.1  5  TIG       IPT/TIG domain


Domain annotation for each model (and alignments):
>> TIG  IPT/TIG domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.1   0.0   1.1e-07     0.002       3      71 ..      37     108 ..      35     119 .. 0.89
   2 !   35.3   0.1   5.1e-13   9.2e-09       6      73 ..     142     218 ..     139     230 .. 0.87
   3 !   33.1   0.0   2.5e-12   4.4e-08       1      85 []     246     333 ..     246     333 .. 0.78
   4 !   24.2   0.0   1.4e-09   2.6e-05       1      71 [.     337     415 ..     337     424 .. 0.86
   5 !   34.8   0.3   7.4e-13   1.3e-08       1      52 [.     456     507 ..     456     520 .. 0.84

  Alignments for each domain:
  == domain 1  score: 18.1 bits;  conditional E-value: 1.1e-07
         TIG   3 issisPnsgsasgGttititGtnFgtnssdssvtiggtpctvta.....svssttlvcttPpgp.sgllnvsvlv 71 
                   s+sP +g++ gGt++ + G  +   ss ssv i   +++ ++     ++ ++ ++c t ++p +g+ ++ v v
  KOO21782.1  37 PLSVSPRKGPTLGGTRMRLEGLRL---SSISSVEIAMPNSPPVVcsglrHIADNLVECRTGAVPaEGEGQILVRV 108
                 569*********************...9999999988888888888******************66699999887 PP

  == domain 2  score: 35.3 bits;  conditional E-value: 5.1e-13
         TIG   6 isPnsgsasgGttititGtnFgtnssdssvtiggtpctvtasvssttlvcttPpgp.........sgllnvsvlvdg 73 
                 ++P  g+++gGt+it++G nF+ n+ + sv iggtpct ++    + l+c t   +         ++ + vsv +++
  KOO21782.1 142 LTPDGGPPAGGTLITVRGANFDLNQLSFSVSIGGTPCTGVKVERQDALTCSTGVLTvpreellgePARVDVSVRTGD 218
                 68999***********************************9888888988888888888889988888888888877 PP

  == domain 3  score: 33.1 bits;  conditional E-value: 2.5e-12
         TIG   1 PvissisPnsgsasgGttititGtnFgtnssdssvtiggtpctvta...svssttlvcttPpgpsg..llnvsvlvdg.aqlrsdnttftY 85 
                 P ++ + Pn g+++gGt++ti+G+++   ++++ v++ g++c  ++      + +l c t+  ++g  +++v+ +++g a  +   +tf+Y
  KOO21782.1 246 PRVTQVWPNVGPVEGGTSLTIRGRGL---ADTVAVNVRGAACAYVKpneATPDAELSCFTTRASAGmgPVEVTSKRGGrALRFGEHLTFRY 333
                 889***********************...***************97777444445555555555441366666666668888888888887 PP

  == domain 4  score: 24.2 bits;  conditional E-value: 1.4e-09
         TIG   1 PvissisPnsgsasgGttititGtnF.gtnssdssvtiggtpctvtasvssttlvcttPpgp......sg.llnvsvlv 71 
                 P i ++ P+s s+ gGt + ++G+ + +t s+ + v+i+g  c + ++ s++ + ct+P         ++ ++ v+v+v
  KOO21782.1 337 PHIEKVLPSSVSVVGGTVLQLHGSRLgDTPSELLAVLIDGRRCGTLTWDSPSLIGCTAPDLEradgsaGApSVDVVVYV 415
                 899***********************88888889*************************99877777533355555555 PP

  == domain 5  score: 34.8 bits;  conditional E-value: 7.4e-13
         TIG   1 PvissisPnsgsasgGttititGtnF.gtnssdssvtiggtpctvtasvsstt 52 
                 P +  i+P+sg+ sgGt++t+tG+ + ++ ++ ++vtig+ +ct + +  + +
  KOO21782.1 456 PRVAQITPSSGPLSGGTRVTLTGSSLgSSKEDILNVTIGTVQCTSI-FLAEKH 507
                 67788*********************88899999**********99.776654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (524 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       337  (0.0187964); expected 358.6 (0.02)
Passed bias filter:                      288  (0.0160634); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.24s 00:00:00.73 Elapsed: 00:00:00.40
# Mc/sec: 3954.11
//
Query:       KOO21783.1  [L=765]
Description: heat shock protein 90 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   7.2e-157  523.4   0.0   4.6e-156  520.7   0.0    1.8  1  HSP90            Hsp90 protein
    8.8e-13   48.3   0.1    1.9e-12   47.2   0.1    1.6  1  HATPase_c_3      Histidine kinase-, DNA gyrase B-, and HSP90-
    3.7e-11   43.5   0.1    6.5e-11   42.7   0.1    1.4  1  HATPase_c        Histidine kinase-, DNA gyrase B-, and HSP90-
     0.0097   16.0   0.1      0.023   14.8   0.1    1.6  1  DUF1198          Protein of unknown function (DUF1198)
  ------ inclusion threshold ------
        4.4    7.6   5.4         19    5.6   0.1    3.4  4  Bac_DNA_binding  Bacterial DNA-binding protein


Domain annotation for each model (and alignments):
>> HSP90  Hsp90 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  520.7   0.0  1.3e-159  4.6e-156       2     506 ..     245     740 ..     244     751 .. 0.91

  Alignments for each domain:
  == domain 1  score: 520.7 bits;  conditional E-value: 1.3e-159
                 GGSHHHHHHHHHHCCTTSSS-EEEEEEEEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX..XXXXXXXXXXEEEEEEESXXSXGGGSXGGGSXHHHH CS
       HSP90   2 yleekklkelvkkySeFinfpiyllkekeeekeveeeeeeeeeeeeeeeeeakveeeeeeeeekkktkkvketvkewellNkqkpiWlrkpkevteeeY 100
                 yl++ +l++++k+ySeFi+fpi++++ek+e   v++ ++e             v+e      e + tk+v +t++ we++N  kp+W+r+pk+vt+ eY
  KOO21783.1 245 YLDDYTLRSMLKRYSEFISFPIEMWAEKTEYDTVPDPDAE-------------VKEG-----ETPPTKTVPRTTNVWETVNLAKPLWMRDPKDVTDAEY 325
                 999*************************999999854443.............3332.....2689********************************* PP

                 HHHHHHTTTTTSXXSEEEEEEEXSSSXEEEEEEEXSSXXTTTTTTTTTSXXTTEEEEETTEEEESXXT.TSSXGGGTTXEEEEEESSSXSSSTHHHHHT CS
       HSP90 101 keFYkslskdsedplavkhfsaegevefkaiLfvPkrapsdlfekykkkkknnikLYvrrVfitdefe.dllPkyLsFvkGvvdsddLPLNvsREtlqq 198
                 +eFYk+  k ++ p a  hfs eg+vefka+Lf+P++ p +l +++ ++k++ +kL+v+rVfi+d+fe +llP++LsF+kG+vds+dLPLNvsRE lq+
  KOO21783.1 326 AEFYKTTFKAYDTPAAQAHFSLEGQVEFKAMLFCPSSVPWELSQDMFSDKNKPMKLFVKRVFISDNFEsELLPRWLSFLKGMVDSEDLPLNVSRELLQK 424
                 *******************************************************************989***************************** PP

                 CHHHHHHHHHHHHHHHHHHHTSXHHH..HHTHHHHHHHHHHHHHHHXGGGHHHHHTTXEEEETTEEEEEEEHHHHHHHSXTTXXEEEEEEXSSHHHHHT CS
       HSP90 199 nkilkvikkklvrKvlemlkklaeekeeykkfykefsknlklGiiedsanrkklakLlrfksskseeeltsLedYvermkekqksiYyiageskeevek 297
                 +++l +i+k+lvrK+++m+k+la+++ ++ kf ++f++ lk+G+ied++n++kl +L+ f+s+  ++++tsL dYv+rm e q +iYy++g+sk+++++
  KOO21783.1 425 SRTLSIISKRLVRKAMDMFKDLAKDEAKWVKFQSNFGRYLKVGVIEDTENKEKLLDLVTFSSTL-GDKVTSLPDYVSRMPEAQTQIYYLSGASKAAASS 522
                 ************************************************************9876.899******************************* PP

                 SGGGHHHHHTTXXEEEEXSTTHHHHHHTXSEETTE..E..EEETTBSTXXX.XXXHHHHHHHHHHHHHHHHHHHHHHHTTTTTESEEEEXSSXSSXSEE CS
       HSP90 298 spflerlkkkgyevlylvdpiDeyvvqqlkeyegk..k..lvnvakeglel.eeeeeekkkkeelkkkfeeltkllkevlkdkvekvkvserlvdsPcv 391
                 sp+lerlkkkg+evl+ +d+iDe+++q + +++ k  +  + + ake+++l e +eeek++ ++ k++ +++t++lk vl+d+v+kv+vs+rl+ sP +
  KOO21783.1 523 SPVLERLKKKGFEVLFALDQIDEIALQGVGKFKVKdkEydVIDAAKENVDLgEVSEEEKAEAKQAKESLKPVTDFLKGVLGDRVDKVEVSSRLEASPSA 621
                 ********************************754213225667*******66899999**************************************** PP

                 EEBXTTSXXHHHHHHHHHHHHHHHSSTSSSSS.XEEEEEXTTSHHHHHHHHHHHH...TTTXHHHHHHHHHHHHHHHHHTTXXXSXHHHHHHHHHHHHT CS
       HSP90 392 lvtseygwsanmerimkaqalrdkskssymss.kktleinprhpiikeLkkkvee...dkedeeakdlaellyetallesGfsledpasfakrierllk 486
                 lv+ ++g+s++m+r m+aqa ++ ++ ++m++  ++leinp+h+++ +L+ +v +    k+d +ak +aelly+ a+++sG++l++p +fa+r+  l++
  KOO21783.1 622 LVQPQWGMSPQMQRFMRAQAAAQGTEDAMMAGmAANLEINPKHAVVARLQAMVGKggdGKADGAAKGFAELLYDVAAVASGYELTNPGAFARRVVALME 720
                 **********************88888877764899****************99844356699***********************************9 PP

                 TTTHX.XSTTTTTTGGGXGGG CS
       HSP90 487 lslgi.dedeeveeeeeveee 506
                  +    ++ e++ee++++e +
  KOO21783.1 721 GGEAAlATLEAAEEAAAAE-A 740
                 8765523333333333322.2 PP

>> HATPase_c_3  Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.2   0.1   5.4e-16   1.9e-12       7      99 ..      93     206 ..      86     233 .. 0.81

  Alignments for each domain:
  == domain 1  score: 47.2 bits;  conditional E-value: 5.4e-16
  HATPase_c_3   7 laelvdNsldAdaen................vkievnknrgktgeivieDdGkGmseeelknal.rlatsskeakr........kstslGkkGiGlkl 79 
                  l elv N+ dA  ++                + i  +k+    ++++ieD+G Gm+++el+  l +++ s +++ +         s+ +Gk+G+G + 
   KOO21783.1  93 LRELVSNASDACDKKrfikltdeasggfsgrIRIIGDKKS---NTLTIEDNGVGMTRKELQTNLgQIGMSGTKKFTealgqskdASNLIGKFGVG-FY 186
                  78*********99999999999999999999999999975...7*****************966488888777554345444434777*******.** PP

  HATPase_c_3  80 Aslslgkkltvitkkegess 99 
                  +++ +++++tv+t++ege +
   KOO21783.1 187 SAFLVADRVTVVTRAEGEPQ 206
                  ****************9986 PP

>> HATPase_c  Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.7   0.1   1.8e-14   6.5e-11       3     110 ..      90     240 ..      88     242 .. 0.74

  Alignments for each domain:
  == domain 1  score: 42.7 bits;  conditional E-value: 1.8e-14
                 HHHHHHHHHHHHHHHHHH..........HSTTTEEEEEEEEEETEEEEEEEESSSSSTTHHHT.......GTCS.TTCH......HCSTCHTSTSSSH. CS
   HATPase_c   3 ekrLrqiisnlvdNavkf..........atkageieveikaseddlvisveDnGiGipkedlk.......klfe.kfsq......ddstkrggggtGl. 76 
                  ++Lr+++sn++d+ +k            +   +++++i  +++ +++++eDnG G+++++l+       ++++ kf++      d+s+ +g++g+G+ 
  KOO21783.1  90 DIFLRELVSNASDACDKKrfikltdeasGGF--SGRIRIIGDKKSNTLTIEDNGVGMTRKELQtnlgqigMSGTkKFTEalgqskDASNLIGKFGVGFy 186
                 689***************9998876532224..445666654679**********************99977777888888868777777888888877 PP

                 .HHHHHHH..HHHHTTTEEEE...............EEET..TTEEEEEEEEES CS
   HATPase_c  77 .Glsivkk..lvelmgGeiwv...............esep..grGttftftlpl 110
                   + ++++  +v++ +Ge ++               +s p  g Gt+ +++l++
  KOO21783.1 187 sAFLVADRvtVVTRAEGEPQLrwesesankytispdDSAPieGSGTRLILSLKE 240
                 666666665455578887777776666666665555444477779998888876 PP

>> DUF1198  Protein of unknown function (DUF1198)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.1   6.4e-06     0.023      83     137 ..     407     461 ..     379     465 .. 0.93

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 6.4e-06
                 TT---HHHHHHHHHHHHHTT------HHHHHHHHHHTGGG---HHHHHHHHHHHH CS
     DUF1198  83 ivdeseenlerWrrllrkarlaaelseeqvrlalgflrelepdaeelaafrrryn 137
                 +vd+++  l+  r+ll+k+r  + +s++ vr a++ +++l  d  +  +f+ ++ 
  KOO21783.1 407 MVDSEDLPLNVSRELLQKSRTLSIISKRLVRKAMDMFKDLAKDEAKWVKFQSNFG 461
                 68999999*******************************************9986 PP

>> Bac_DNA_binding  Bacterial DNA-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.6   0.0     0.045   1.6e+02      16      48 ..      65      97 ..      53     110 .. 0.85
   2 ?   -2.7   0.0       1.9   6.8e+03      16      35 ..     431     450 ..     419     452 .. 0.75
   3 ?    5.6   0.1    0.0052        19      35      56 ..     539     560 ..     527     564 .. 0.89
   4 ?   -1.7   0.1      0.97   3.5e+03       9      42 ..     575     609 ..     573     613 .. 0.76

  Alignments for each domain:
  == domain 1  score: 2.6 bits;  conditional E-value: 0.045
                     --HHHHHHHHHHHHHHHHHHHHTT-EEEETTTE CS
  Bac_DNA_binding 16 ltkkdakrvveafldtikeaLkkgekvelsgFG 48
                      t+ + ++ v+ ++d+i+++L ++++++l+++ 
       KOO21783.1 65 KTEYEFEAEVSKVMDIIINSLYSDKDIFLRELV 97
                     5677888899*******************9986 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 1.9
                      --HHHHHHHHHHHHHHHHHH CS
  Bac_DNA_binding  16 ltkkdakrvveafldtikea 35 
                      ++k+ +++++++f d+ k++
       KOO21783.1 431 ISKRLVRKAMDMFKDLAKDE 450
                      79999999999999988765 PP

  == domain 3  score: 5.6 bits;  conditional E-value: 0.0052
                      HHHTT-EEEETTTEEEEEEEE- CS
  Bac_DNA_binding  35 aLkkgekvelsgFGtfkvkerk 56 
                      aL + +++ l+g G+fkvk+++
       KOO21783.1 539 ALDQIDEIALQGVGKFKVKDKE 560
                      889999************9875 PP

  == domain 4  score: -1.7 bits;  conditional E-value: 0.97
                      HHHTT----HHHHHHHHHHHHHHHHHHH.HTT-EE CS
  Bac_DNA_binding   9 eiaektgltkkdakrvveafldtikeaL.kkgekv 42 
                      e++e+ + + k+ak+ ++ ++d +k  L  + +kv
       KOO21783.1 575 EVSEEEKAEAKQAKESLKPVTDFLKGVLgDRVDKV 609
                      78899999999999999999998888774444555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (765 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       733  (0.0408835); expected 358.6 (0.02)
Passed bias filter:                      501  (0.0279436); expected 358.6 (0.02)
Passed Vit filter:                        54  (0.00301188); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.65u 0.27s 00:00:00.92 Elapsed: 00:00:00.42
# Mc/sec: 5510.26
//
Query:       KOO21784.1  [L=466]
Description: hypothetical protein Ctob_001120 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.1e-05   24.5   0.1    7.9e-05   23.2   0.1    1.6  1  Ank_2     Ankyrin repeats (3 copies)
    0.00024   21.1  21.1    0.00077   19.5  21.1    1.9  1  zf-MYND   MYND finger
    0.00052   20.5   0.0     0.0021   18.6   0.0    2.1  1  Ank_4     Ankyrin repeats (many copies)
     0.0026   18.0   0.3      0.013   15.8   0.2    2.2  2  Ank_5     Ankyrin repeats (many copies)


Domain annotation for each model (and alignments):
>> Ank_2  Ankyrin repeats (3 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.2   0.1   1.8e-08   7.9e-05      13      72 ..      57     130 ..      44     140 .. 0.74

  Alignments for each domain:
  == domain 1  score: 23.2 bits;  conditional E-value: 1.8e-08
       Ank_2  13 vklLlegadpn..k..ngktaLhyAakngnleivklLleh..........adndgrtpLhyAarsghleivklL 72 
                    L e +++n  +  +g t +h+Aa +g+  ++ +Lle           +++ g+tpL +A  +gh+ ++  L
  KOO21784.1  57 ASALSEVVNLNacCtgTGDTLVHVAAAHGSQRMLAWLLERvaegaccptlVNDAGQTPLEVAEAQGHSVFAATL 130
                 444444455555325699********************9555677788777799*********99*97666666 PP

>> zf-MYND  MYND finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.5  21.1   1.7e-07   0.00077       4      38 .]     144     182 ..     141     182 .. 0.85

  Alignments for each domain:
  == domain 1  score: 19.5 bits;  conditional E-value: 1.7e-07
                 T--.....B-SCE-TTTS-SEESSHHHHHHCHHHHCCCH CS
     zf-MYND   4 Cgk....aealkkCagCksvfYCskeCqradwksHkteC 38 
                 Cg     +   k C +C++++YCs+eCqra+ + Hk  C
  KOO21784.1 144 CGSvgcwKLGSKCCNRCQQAWYCSTECQRAAHSAHKDAC 182
                 5555555577789************************99 PP

>> Ank_4  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.6   0.0   4.8e-07    0.0021       2      39 ..      75     115 ..      41     118 .. 0.69

  Alignments for each domain:
  == domain 1  score: 18.6 bits;  conditional E-value: 4.8e-07
       Ank_4   2 ltaLhyaaisgrlelvrlLlekgad...inaqdnrsGetal 39 
                  t+ h aa++g  +++++Lle+ a+   +    n+ G+t+l
  KOO21784.1  75 DTLVHVAAAHGSQRMLAWLLERVAEgacCPTLVNDAGQTPL 115
                 46677777777777777777665553333333577777776 PP

>> Ank_5  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.2   2.8e-06     0.013      12      56 .]      72     118 ..      64     118 .. 0.83
   2 ?   -2.0   0.0       1.1   5.1e+03      27      48 ..     265     288 ..     264     290 .. 0.82

  Alignments for each domain:
  == domain 1  score: 15.8 bits;  conditional E-value: 2.8e-06
       Ank_5  12 ldgggntpLhvAakygaadvvrlLl....argadlnltdsrGltaldlA 56 
                   g+  t  hvAa +g+++++ +Ll    +  + ++l ++ G+t+l++A
  KOO21784.1  72 GTGD--TLVHVAAAHGSQRMLAWLLervaEGACCPTLVNDAGQTPLEVA 118
                 4444..899****************99966667788899999*****98 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 1.1
       Ank_5  27 gaadvvrlLl..argadlnltdsr 48 
                 +a++ +r +l  a++a+++l+d r
  KOO21784.1 265 QAPEELRTILdeAERAAAFLRDWR 288
                 678899999999999999999855 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (466 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       654  (0.0364772); expected 358.6 (0.02)
Passed bias filter:                      319  (0.0177924); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.49u 0.27s 00:00:00.76 Elapsed: 00:00:00.42
# Mc/sec: 3349.72
//
Query:       KOO21785.1  [L=989]
Description: type iii effector protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    9.1e-10   38.6   0.7    2.7e-05   23.9   0.1    2.6  2  IU_nuc_hydro  Inosine-uridine preferring nucleoside hydrolase
    0.00079   19.1   5.7     0.0017   18.1   5.7    1.4  1  Collagen      Collagen triple helix repeat (20 copies)
  ------ inclusion threshold ------
       0.12   12.6   1.6         26    5.1   0.0    3.5  3  YqjK          YqjK-like protein


Domain annotation for each model (and alignments):
>> IU_nuc_hydro  Inosine-uridine preferring nucleoside hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.2   0.0   1.6e-05     0.097       8     211 ..     199     444 ..     193     488 .. 0.57
   2 !   23.9   0.1   4.6e-09   2.7e-05       2     154 ..     587     731 ..     586     749 .. 0.69

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 1.6e-05
                   --S.....HHHHHHH.HHH.HCTHTTEEEEEEEE-S.SSS-HHHHHHHHHHHHHHHCTTT.S-EEEE-SS-SSSS..S-SHHHHTTTSSTSS..... CS
  IU_nuc_hydro   8 DpG.....iDDalAl.lla.laespeiellgittva.GnvsleqatrnalrvlealggrddipvyaGaekpllre..kaaaeihGedGlgdv..... 89 
                   D G     + D +Al +l  l+  + ++  +i+ +  G v     ++    ++ +lg ++ +   +Gae+   ++  k ++   G+dG +++     
    KOO21785.1 199 DFGgrqedTGDEVALfMLRgLETLEFVRTHAIILSGaGPVGRTSRAHA--VIV-SLGFEHGVVFGVGAECEGYTPpaKSSNGSNGSDGSNGSngsng 292
                   555554445677777444455442335666666655455544433333..333.4443454777788888533332233333555555532222233 PP

                   ...........-.--SSHCSCSSHHHHHHHHHHHHCHHTTTTEEEEECS-SHHHHHHHHHT.CCHHHHEEEEEEE---SS................. CS
  IU_nuc_hydro  90 ...........llpeperkaesesavdalidaveaareypgevtlvatGplTNiAlalrld.pelakkvkrlviMGGaft................. 157
                              +l++p ++ +  +a++a+++ ++  +    ++ +  + + T+ A++lr+  + +a+k+ + v+M Ga++                 
    KOO21785.1 293 sdgsdgsngspNLAPPRPELAVLDAARAFYRVLDDPHVADYTLIVNLLCAPTDFAAMLRERgEGIARKL-KCVCMLGAVSattagvdaltnakaysg 388
                   333344444444444444555566667777777555554335888889999*******99747788888.677777778878999998888888777 PP

                   ..........S--SSSSSS-HHHHHSHHHHHHHHHTS-E....EEEE-HHHHTTSCHEECHHHHHHH CS
  IU_nuc_hydro 158 ..........arGNvtpvaEfNifvDPeAAkiVlesapv...kitlvpldvthkvqalltseeveel 211
                             +            ++DPeA ++V++  ++   ++++v+  +     a+++ + ++el
    KOO21785.1 389 tesylrpdptH---------PQHVADPEASEYVFQRLQElgvPLIVVGRHAVY--AAAVPAALYDEL 444
                   66665443331.........34689*********8744423444555544333..223333444443 PP

  == domain 2  score: 23.9 bits;  conditional E-value: 4.6e-09
                   EEEEEE--S..HHHHHHHHHH.HCTHTTEEEEEEEE-SSSS-HHHHHHHHHHHHHHHCTTT.S-EEEE-SS-SSSSS-SHHHHTTTSSTSS-.--SS CS
  IU_nuc_hydro   2 kvilDtDpG..iDDalAllla.laespeiellgittvaGnvsleqatrnalrvlealggrddipvyaGaekpllrekaaaeihGedGlgdvllpepe 95 
                   ++i+ tDpG   DD lA++++      +  +  i  va n + ++a +  l+   +++g  d+pv++G +    r+ +       d +   + p  +
    KOO21785.1 587 PMIVFTDPGqdLDDELAMIMLrSLV-AQRFVRPIGLVA-NLHPSDARARLLKGQMRVLGLPDVPVAVGTDGG--RT-D-----HVDTFSS-TAPYIA 672
                   6899*****999******6663333.445677777777.55555555555544447777888******8886..21.1.....1122221.223334 PP

                   HCSCSSHHHHHHHHHHHHCHHTTTTEEEEECS-SHHHHHHHHHTCCH.HHHEEEEEEE-- CS
  IU_nuc_hydro  96 rkaesesavdalidaveaareypgevtlvatGplTNiAlalrldpel.akkvkrlviMGG 154
                   ++ e es ++a+ + v +a++  ++v  v++  lT+   +l+ ++ l ++kv  ++iMGG
    KOO21785.1 673 SETEVESDANAMLRRVLKAEAD-ATVLCVCISSLTDAWGFLQAEEALfTAKVHSVTIMGG 731
                   4555566666777776455443.37******************988879*********** PP

>> Collagen  Collagen triple helix repeat (20 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.1   5.7   2.8e-07    0.0017      29      56 ..     275     302 ..     264     306 .. 0.50

  Alignments for each domain:
  == domain 1  score: 18.1 bits;  conditional E-value: 2.8e-07
                 EEE-TTSS-----------------BB- CS
    Collagen  29 ekGpaGekGppGaaGkpGapGekGeaGa 56 
                 ++G +G++G++G++G++G++G++G++G+
  KOO21785.1 275 SNGSNGSDGSNGSNGSNGSDGSDGSNGS 302
                 3444444444444444444444444443 PP

>> YqjK  YqjK-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.4   0.0    0.0074        44      28      46 ..     217     235 ..     215     241 .. 0.94
   2 ?   -2.9   0.2       1.4   8.5e+03       7      28 ..     458     479 ..     457     480 .. 0.80
   3 ?    5.1   0.0    0.0044        26      48      66 ..     557     575 ..     548     578 .. 0.82

  Alignments for each domain:
  == domain 1  score: 4.4 bits;  conditional E-value: 0.0074
        YqjK  28 rgwqtlrslrkhlilvsgl 46 
                 rg++tl+++r+h+i++sg+
  KOO21785.1 217 RGLETLEFVRTHAIILSGA 235
                 799**************97 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 1.4
        YqjK   7 qQRldLaqaaepwekalapvDr 28 
                 +QR+++ +  ++++ ++ +++r
  KOO21785.1 458 SQRRAIDELWHRVQAPVGSAER 479
                 7999999999999888887776 PP

  == domain 3  score: 5.1 bits;  conditional E-value: 0.0044
        YqjK  48 allgvrrPrrllrwlrrgl 66 
                 al gvrrP+ l+r+++ + 
  KOO21785.1 557 ALAGVRRPKELMRLIHSAS 575
                 788***********98775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (989 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       444  (0.0247643); expected 358.6 (0.02)
Passed bias filter:                      386  (0.0215294); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.71u 0.25s 00:00:00.96 Elapsed: 00:00:00.43
# Mc/sec: 6983.49
//
Query:       KOO21786.1  [L=89]
Description: dynein light chain cytoplasmic [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.5e-43  146.3   2.1    2.8e-43  146.1   2.1    1.0  1  Dynein_light  Dynein light chain type 1
  ------ inclusion threshold ------
      0.052   13.3   0.1      0.073   12.8   0.1    1.3  1  Imm48         Immunity protein 48


Domain annotation for each model (and alignments):
>> Dynein_light  Dynein light chain type 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  146.1   2.1   3.1e-47   2.8e-43       1      86 []       5      88 ..       5      88 .. 0.99

  Alignments for each domain:
  == domain 1  score: 146.1 bits;  conditional E-value: 3.1e-47
                  --EEEEEEE-HHHHHHHHHHHHHHHHH-SSHH..HHHHHHHHHHHHHH-S-EEEEEEEEEEEEEEEETTEEEEEEETTEEEEEEE- CS
  Dynein_light  1 kavikeadmseemqeeaielakealekfkkekekdiaayikkeldkkygptWhciVgksfgssvthekghfiyfyigklaillfKt 86
                  kavik+admse+mq++ai++a++alek++ ek  diaa+ikke+dkky+ptWhciVg++fgs+vthe++hfiyfy+g++ail+fK+
    KOO21786.1  5 KAVIKNADMSEDMQQDAIDCATQALEKYNIEK--DIAAFIKKEFDKKYNPTWHCIVGRNFGSYVTHETKHFIYFYLGQVAILCFKS 88
                  689***************************99..***************************************************7 PP

>> Imm48  Immunity protein 48
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.1   8.2e-06     0.073      50     106 ..      16      71 ..       4      74 .. 0.76

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 8.2e-06
       Imm48  50 diqavmieilieklg.yseeeaaelaqfvIeaTdkefhptlyaiihRGiegyyqykek 106
                 d+q   i+ ++++l+ y+ e   ++a f+ +  dk+++pt + i++R   +y++++ k
  KOO21786.1  16 DMQQDAIDCATQALEkYNIE--KDIAAFIKKEFDKKYNPTWHCIVGRNFGSYVTHETK 71 
                 56666666666666424433..46788888999********************98865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (89 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       826  (0.0460706); expected 358.6 (0.02)
Passed bias filter:                      553  (0.0308439); expected 358.6 (0.02)
Passed Vit filter:                        47  (0.00262145); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.35u 0.24s 00:00:00.59 Elapsed: 00:00:00.37
# Mc/sec: 719.39
//
Query:       KOO21787.1  [L=547]
Description: fam116a protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      7e-06   26.0   0.0    1.1e-05   25.4   0.0    1.3  1  SPA       Stabilization of polarity axis
    2.2e-05   23.4   0.0    4.1e-05   22.5   0.0    1.4  2  Avl9      Transport protein Avl9
  ------ inclusion threshold ------
        0.3   11.6   0.0       0.46   11.0   0.0    1.2  1  Afi1      Docking domain of Afi1 for Arf3 in vesicle traffick


Domain annotation for each model (and alignments):
>> SPA  Stabilization of polarity axis
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.4   0.0   1.8e-09   1.1e-05      13     109 ..     219     316 ..     210     321 .. 0.79

  Alignments for each domain:
  == domain 1  score: 25.4 bits;  conditional E-value: 1.8e-09
         SPA  13 peiillinalltskriivlstkasadevsefvLalsnlispagdvlrgfknnsfPyvdlse......ldalekvpg........yIvGvtNPiFeeqeq 97 
                  e ++l++ llt + ++vl+ +     +s++vLal +li p    l +  +n++Py +++       l      +g        ++vG tNP+   +  
  KOO21787.1 219 GECWTLWQLLLTGESLVVLTPSPHQ--CSDIVLALPALIAP----LPC-MSNVRPYLTVHApdwevhL------TGtgpppgsgLLVGATNPMLSRNPP 304
                 57789***************99988..*************9....333.24569**999995555333......3344456699**************9 PP

         SPA  98 lWDvlydldsgs 109
                  W  l+ l++++
  KOO21787.1 305 AWLSLLVLEARE 316
                 998888777766 PP

>> Avl9  Transport protein Avl9
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.5   0.0   6.9e-09   4.1e-05       6     129 ..      18     127 ..      13     138 .. 0.84
   2 ?   -3.7   0.0      0.62   3.7e+03     287     308 ..     290     311 ..     288     314 .. 0.82

  Alignments for each domain:
  == domain 1  score: 22.5 bits;  conditional E-value: 6.9e-09
        Avl9   6 vvgFhHkkGpevefsyppeeeekeekesewklLpflalpDGsHnfee.dfvyFtleedeseteeektlfgiscvrQikaeelkartadvtRstvQKsvv 103
                  v+F    G+ +e s p     ++ +  e ++L f a+pD   ++     ++F ++     +e+ + l+g s +r        +r++   R + QKs+v
  KOO21787.1  18 CVNFDVDIGHVIEASWP-----RKLTAAEETTLCFAAMPDSQPSSGGlGDSCFAFH---FLSESGRALWGFSLFRA-------RRESSQRRGVFQKSLV 101
                 68999999******999.....4445556679********9887754255778877...7789999********95.......577778899******* PP

        Avl9 104 vlsklpifgkikekLslitkayfeqk 129
                  ls++p f+ +++   l ++ayf+ +
  KOO21787.1 102 LLSDKPFFQLFRSAVTLLADAYFASG 127
                 ***********************875 PP

  == domain 2  score: -3.7 bits;  conditional E-value: 0.62
        Avl9 287 flvGtsNsLllqqkelladvlv 308
                  lvG++N +l ++      +lv
  KOO21787.1 290 LLVGATNPMLSRNPPAWLSLLV 311
                 68********999887766665 PP

>> Afi1  Docking domain of Afi1 for Arf3 in vesicle trafficking
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   7.7e-05      0.46       6      41 ..      20      54 ..      17      80 .. 0.82

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 7.7e-05
        Afi1  6 eFdidkGpvikhqYPkaipgdetlseLAelmlPdqv 41
                +Fd+d G vi++++P +++  e++  L    +Pd+ 
  KOO21787.1 20 NFDVDIGHVIEASWPRKLTAAEET-TLCFAAMPDSQ 54
                7******************97777.78888888875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (547 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       317  (0.0176809); expected 358.6 (0.02)
Passed bias filter:                      210  (0.0117129); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.51u 0.23s 00:00:00.74 Elapsed: 00:00:00.41
# Mc/sec: 4007.17
//
Query:       KOO21788.1  [L=625]
Description: short-chain dehydrogenase reductase sdr [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.1e-20   73.0   0.1    2.7e-19   69.4   0.1    2.2  1  adh_short     short chain dehydrogenase
    9.1e-12   45.0   0.4    1.3e-10   41.3   0.2    2.6  2  adh_short_C2  Enoyl-(Acyl carrier protein) reductase
     0.0004   20.3   0.1    0.00085   19.3   0.1    1.6  1  KR            KR domain
    0.00095   19.0   0.0     0.0028   17.5   0.0    1.9  1  F-box-like    F-box-like
     0.0015   18.9   0.0      0.056   13.9   0.0    2.8  3  LRR_4         Leucine Rich repeats (2 copies)
  ------ inclusion threshold ------
      0.065   13.8   0.1         69    4.6   0.1    4.2  3  LRR_1         Leucine Rich Repeat


Domain annotation for each model (and alignments):
>> adh_short  short chain dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.4   0.1     9e-23   2.7e-19       3     176 ..      77     271 ..      75     288 .. 0.79

  Alignments for each domain:
  == domain 1  score: 69.4 bits;  conditional E-value: 9e-23
                 EEEESTTSHHHHHHHHHHHHTT-EEEEEES......CHHHHHHHHHHHHHTTSEEEEEE-TTTSHHHHHHHHHHHHHHHSSESEEEE---S.S--SSGG CS
   adh_short   3 vlvtGassGIGraiakelakeGakvvvvdr......seekleevakelkeegakalaiqvDvtdreevealvekavkklgkldvLvnNAGi.tgsgpfs 94 
                 +l+tG+ssGIG  +ak la+ G  vv+ +r      +  +++++ + l ++  ++  +++D+++ ++v+a+ ++  +   ++dvL  NAG    ++++ 
  KOO21788.1  77 ALITGGSSGIGFFVAKMLASIGLAVVLPSRpglefeTRGAAAAIRAALPNATVEVPEATLDLASFASVRAFGAHLHEGGRPIDVLCLNAGRgGSPRDQL 175
                 8**************************7662322223334455556666668889999*********************************77788899 PP

                 GCSHHHHHHHHHHHTHHHHHHHHHHHHHHHHCTTEEEEEEEEGGGTSB-TTB..............HHHHHHHHHHHHHHHHHHHHHGGGTEEEEE CS
   adh_short  95 elseeewervievNltgvflltravlpamlkqssGrIvnvsSvagkvpvagv..............aaYsAsKaavagltrslakelaptgirvna 176
                 +l++++ e++++vNl g  ll+r++lp + ++  +rIv  +S a +++  +               + Y+ sKaa+  ++r+l   la+ g++  a
  KOO21788.1 176 QLTADNEEATMQVNLLGHALLVRELLPSLQRSTYARIVVHTSSARQNAAQSSlsdlrgagfsdspsSQYALSKAALCLYARALNTRLASAGVTGAA 271
                 999999********************************9999887665443211112222222222689999999999999999999999997544 PP

>> adh_short_C2  Enoyl-(Acyl carrier protein) reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.3   0.2   4.3e-14   1.3e-10       3     166 ..      83     269 ..      81     292 .. 0.78
   2 ?   -2.2   0.0      0.82   2.5e+03      63      90 ..     343     372 ..     337     381 .. 0.69

  Alignments for each domain:
  == domain 1  score: 41.3 bits;  conditional E-value: 4.3e-14
                   TTSHHHHHHHHHHHTT-EEEEEESSGGH...HHHHHHHHHHTTSE.E....EE--TTSHHHHHHHHHHHHHHHSSEEEEEE-----EGCSS-GGGH- CS
  adh_short_C2   3 asgIGraiAkalaeeGaevvltdlneea...kkrveelaeelgae.v....lecDVtdeeqvealveevvekfgklDilvnnagiapklkgpflets 91 
                    sgIG+ +Ak la+ G  vvl  +   +   + +++++ ++l+++ v      +D ++ ++v+a+ +++ e    +D+l+ nag   +   + l+++
    KOO21788.1  83 SSGIGFFVAKMLASIGLAVVLPSRPGLEfetRGAAAAIRAALPNAtVevpeATLDLASFASVRAFGAHLHEGGRPIDVLCLNAGRGGS-PRDQLQLT 178
                   59*******************99887666345677777788885544659999**********************************9.9999**** PP

                   HHHHHHHHHHHTHHHHHHHHHHHHHCTSC..CEEEEEEEGGGTSBSTTT..........T....HHHHHHHHHHHHHHHHHHHHGGGTEEE CS
  adh_short_C2  92 reefdraldvnlyslfllakaalplmkeg..gsivnlssvgaervvpny..........n....aygaaKaalealtrylAvelgpkgiRv 166
                    ++ + +++vnl + +ll++++lp ++++  ++iv  +s + + + ++           +     y+ +Kaal   +r+l   l++ g++ 
    KOO21788.1 179 ADNEEATMQVNLLGHALLVRELLPSLQRStyARIVVHTSSARQNAAQSSlsdlrgagfsDspssQYALSKAALCLYARALNTRLASAGVTG 269
                   ************************8877779888877776655544321111111111112234788888888888888888888888765 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 0.82
                   HHHHHSSEEEEEE-----EG..CSS-GGGH CS
  adh_short_C2  63 vvekfgklDilvnnagiapk..lkgpflet 90 
                   +v+   ++D+l   a++a++     ++++t
    KOO21788.1 343 LVHLCSNIDGLAELAAMARTskTFHSIIQT 372
                   566678899999999999994444444444 PP

>> KR  KR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.3   0.1   2.8e-07   0.00085       4     119 ..      78     196 ..      76     237 .. 0.78

  Alignments for each domain:
  == domain 1  score: 19.3 bits;  conditional E-value: 2.8e-07
                 EEETTTSHHHHHHHHHHHHHHS-EEEEE-SS.....--HHHHHHHHHHHHTT-EEEE----TT-HHHHHHHHHHHHHHSS---EEEE------.---TT CS
          KR   4 litGGlGgLGlelarwlaekgarhlvllsRsa...aadedskaliaelealgaevevvaaDvsdkdavealleeikaeeppikGvihaAgvlr.dklle 98 
                 litGG  g+G  +a++la+ g   +vl sR +   +++ +++a  a+l +  +ev  + +D+++ ++v+a  +++++ ++pi      Ag     +   
  KOO21788.1  78 LITGGSSGIGFFVAKMLASIGL-AVVLPSRPGlefETRGAAAAIRAALPNATVEVPEATLDLASFASVRAFGAHLHEGGRPIDVLCLNAGRGGsPRDQL 175
                 9*****************9996.589****98887777777778888999999**********************999999998887777654245566 PP

                 T--HHHHHHHHTTTTHHHHHH CS
          KR  99 emtaedleqvlapKvkGawnL 119
                 ++ta++ e+ ++  + G   L
  KOO21788.1 176 QLTADNEEATMQVNLLGHALL 196
                 667777777777766666555 PP

>> F-box-like  F-box-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5   0.0   9.2e-07    0.0028       2      47 ..     336     382 ..     335     383 .. 0.92

  Alignments for each domain:
  == domain 1  score: 17.5 bits;  conditional E-value: 9.2e-07
  F-box-like   2 srLPdEiLlqIFsyLp.psdLlrlalVCrrWrrvaldtplLWrrlvl 47 
                 + LP + L++  s ++ + +L++ a++++ +++++++++  W +++l
  KOO21788.1 336 AALPYDTLVHLCSNIDgLAELAAMARTSKTFHSIIQTEAICWEKITL 382
                 68*************6477************************9986 PP

>> LRR_4  Leucine Rich repeats (2 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.5   0.0      0.15   4.5e+02      19      33 ..     475     489 ..     463     495 .. 0.77
   2 !   13.9   0.0   1.9e-05     0.056       2      39 ..     510     551 ..     509     562 .. 0.86
   3 ?   -2.1   0.0       1.9   5.8e+03      22      36 ..     560     576 ..     552     581 .. 0.64

  Alignments for each domain:
  == domain 1  score: 1.5 bits;  conditional E-value: 0.15
                 HHH-TT--EEE-.-S CS
       LRR_4  19 leklpnLkeLdLsgN 33 
                 l +l++L++L L g+
  KOO21788.1 475 LDGLKQLEVLELRGC 489
                 456999999999655 PP

  == domain 2  score: 13.9 bits;  conditional E-value: 1.9e-05
                 S--EEE--SS-..--.E-S-HHH.-TT--EEE-.-S-----G CS
       LRR_4   2 nLevLdLsnNq..lt.dipllek.lpnLkeLdLsgNnlitdl 39 
                 +L+ L+Ls++   +  d++ l   lp L++Ld+s+++ ++d 
  KOO21788.1 510 RLRQLSLSHCSqaIDeDVSALLMaLPGLQSLDMSFCPALGDA 551
                 79******98679**999998866**********99887765 PP

  == domain 3  score: -2.1 bits;  conditional E-value: 1.9
                 -TT--EEE-....-S--- CS
       LRR_4  22 lpnLkeLdL...sgNnli 36 
                 l +L++L +   s+N ++
  KOO21788.1 560 LASLRVLGCprmSFN-RL 576
                 778888886554666.44 PP

>> LRR_1  Leucine Rich Repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.2   0.0      0.29   8.8e+02       1      11 [.     480     490 ..     480     499 .. 0.88
   2 ?    2.2   0.0      0.14   4.2e+02       1      11 [.     510     520 ..     510     530 .. 0.80
   3 ?    4.6   0.1     0.023        69       2      14 ..     537     555 ..     536     584 .. 0.80

  Alignments for each domain:
  == domain 1  score: 1.2 bits;  conditional E-value: 0.29
       LRR_1   1 nLrhLdLsnnp 11 
                 +L++L L+++ 
  KOO21788.1 480 QLEVLELRGCE 490
                 59********7 PP

  == domain 2  score: 2.2 bits;  conditional E-value: 0.14
       LRR_1   1 nLrhLdLsnnp 11 
                 +Lr L Ls+++
  KOO21788.1 510 RLRQLSLSHCS 520
                 69********8 PP

  == domain 3  score: 4.6 bits;  conditional E-value: 0.023
       LRR_1   2 LrhLdLsnnp......llg 14 
                 L++Ld+s +p      l++
  KOO21788.1 537 LQSLDMSFCPalgdatLER 555
                 99*******9544333343 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (625 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       378  (0.0210832); expected 358.6 (0.02)
Passed bias filter:                      318  (0.0177366); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.55u 0.29s 00:00:00.84 Elapsed: 00:00:00.44
# Mc/sec: 4309.29
//
Query:       KOO21789.1  [L=211]
Description: hypothetical protein Ctob_001116 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (211 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       229  (0.0127726); expected 358.6 (0.02)
Passed bias filter:                      199  (0.0110993); expected 358.6 (0.02)
Passed Vit filter:                        11  (0.000613531); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.39u 0.25s 00:00:00.64 Elapsed: 00:00:00.40
# Mc/sec: 1563.80
//
Query:       KOO21790.1  [L=475]
Description: methyltransferase family [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.9e-14   51.1   0.0    2.2e-06   26.8   0.0    2.4  2  EF-hand_1        EF hand
    2.1e-11   43.5   0.3    4.9e-11   42.3   0.3    1.7  1  EF-hand_8        EF-hand domain pair
    2.5e-11   43.8   0.0    4.2e-11   43.1   0.0    1.4  1  EF-hand_7        EF-hand domain pair
      1e-09   37.6   0.0    0.00016   21.3   0.0    2.5  2  EF-hand_6        EF-hand domain
    2.5e-08   33.0   0.1    0.00078   18.8   0.0    2.4  2  EF-hand_5        EF hand
    2.1e-06   27.9   0.0    3.8e-06   27.0   0.0    1.4  1  Methyltransf_21  Methyltransferase FkbM domain
    7.9e-06   26.1   0.0    1.8e-05   25.0   0.0    1.6  1  EF-hand_9        EF-hand domain
  ------ inclusion threshold ------
      0.057   13.4   0.0       0.13   12.2   0.0    1.6  1  EF-hand_4        Cytoskeletal-regulatory complex EF hand
       0.14   12.5   0.0       0.25   11.7   0.0    1.4  1  SPARC_Ca_bdg     Secreted protein acidic and rich in cysteine


Domain annotation for each model (and alignments):
>> EF-hand_1  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.9   0.0   4.1e-08   8.2e-05       5      28 ..      91     114 ..      90     115 .. 0.93
   2 !   26.8   0.0   1.1e-09   2.2e-06       3      28 ..     125     150 ..     123     151 .. 0.92

  Alignments for each domain:
  == domain 1  score: 21.9 bits;  conditional E-value: 4.1e-08
                 HHHHHTTTSSSEEEHHHHHHHHHH CS
   EF-hand_1   5 iFrefDkDgdGkIdfeEfkellkk 28 
                 +F++fD Dg+G+Id  E++++l++
  KOO21790.1  91 VFAKFDADGSGFIDTAEMRSVLTA 114
                 69******************9975 PP

  == domain 2  score: 26.8 bits;  conditional E-value: 1.1e-09
                 HHHHHHHTTTSSSEEEHHHHHHHHHH CS
   EF-hand_1   3 keiFrefDkDgdGkIdfeEfkellkk 28 
                   +++e+D Dg+G Id++Ef+++lkk
  KOO21790.1 125 STMMNEADPDGSGAIDLDEFVTVLKK 150
                 579*********************98 PP

>> EF-hand_8  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.3   0.3   2.5e-14   4.9e-11       2      55 .]     100     151 ..      91     151 .. 0.94

  Alignments for each domain:
  == domain 1  score: 42.3 bits;  conditional E-value: 2.5e-14
   EF-hand_8   2 kgkItreelrril.rilglkkglseeevdilfrefDtdgdGkisfeEFcvllerr 55 
                 +g I+++e+r+ l ++ +++  +see++ ++++e+D dg+G+i+++EF+ +l+++
  KOO21790.1 100 SGFIDTAEMRSVLtAA-QIE--MSEEQLSTMMNEADPDGSGAIDLDEFVTVLKKQ 151
                 799********99666.888..****************************99986 PP

>> EF-hand_7  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.1   0.0   2.1e-14   4.2e-11       2      69 ..      86     147 ..      85     149 .. 0.95

  Alignments for each domain:
  == domain 1  score: 43.1 bits;  conditional E-value: 2.1e-14
   EF-hand_7   2 eklkeaFkelDtdgdgyldkeellrllrkifqgagegsklsdeelellfkefDtdkdGvisfdEFlkl 69 
                  kl  +F ++D dg+g++d +e++++l+        + ++s+e+l ++++e D d++G i++dEF++ 
  KOO21790.1  86 AKLTPVFAKFDADGSGFIDTAEMRSVLT------AAQIEMSEEQLSTMMNEADPDGSGAIDLDEFVTV 147
                 578899**********************......99*****************************976 PP

>> EF-hand_6  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.3   0.0   8.3e-08   0.00016       5      27 ..      91     113 ..      88     119 .. 0.94
   2 !   13.5   0.0   2.7e-05     0.053       9      28 ..     131     150 ..     126     163 .. 0.87

  Alignments for each domain:
  == domain 1  score: 21.3 bits;  conditional E-value: 8.3e-08
   EF-hand_6   5 aFklfDkdgdGkidaeElrkalr 27 
                 +F +fD dg+G+id++E+r++l+
  KOO21790.1  91 VFAKFDADGSGFIDTAEMRSVLT 113
                 7********************98 PP

  == domain 2  score: 13.5 bits;  conditional E-value: 2.7e-05
   EF-hand_6   9 fDkdgdGkidaeElrkalrk 28 
                  D dg+G id +E++ +l+k
  KOO21790.1 131 ADPDGSGAIDLDEFVTVLKK 150
                 699***************97 PP

>> EF-hand_5  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.8   0.0   3.9e-07   0.00078       4      24 ..      91     111 ..      89     112 .. 0.92
   2 !   11.7   0.0   6.9e-05      0.14       5      24 ..     128     147 ..     125     149 .. 0.87

  Alignments for each domain:
  == domain 1  score: 18.8 bits;  conditional E-value: 3.9e-07
                 HHHHH-SS-SSCE-HHHHHHH CS
   EF-hand_5   4 tFqaiDlNgDGkIskeELktl 24 
                 +F ++D++g+G+I+  E + +
  KOO21790.1  91 VFAKFDADGSGFIDTAEMRSV 111
                 69***************9986 PP

  == domain 2  score: 11.7 bits;  conditional E-value: 6.9e-05
                 HHHH-SS-SSCE-HHHHHHH CS
   EF-hand_5   5 FqaiDlNgDGkIskeELktl 24 
                  +++D +g+G I+ +E+ t+
  KOO21790.1 128 MNEADPDGSGAIDLDEFVTV 147
                 578999***********986 PP

>> Methyltransf_21  Methyltransferase FkbM domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.0   0.0   1.9e-09   3.8e-06       1     171 [.     256     421 ..     256     423 .. 0.66

  Alignments for each domain:
  == domain 1  score: 27.0 bits;  conditional E-value: 1.9e-09
  Methyltransf_21   1 dvGanigvwdsfanltarlcggggevlaiEPvpnslpkfeklranll.....tlavgndvglyelivegksggkyfpfavgdtngfstssvlgg 89 
                      d G ++g  +s++ ++++ ++++g    +EP+p+    f +     +     +lav+++ g+  +  ++   +++++ +  d++  ++    +g
       KOO21790.1 256 DLGCYDGITYSNTWYFENVLNWTGLC--VEPNPEV---FPRIASQAGrasgvQLAVSDTPGTLPFVAAYM--RSSLNASAVDYAFLQS----QG 338
                      56778888888888888899999977..******5...55443333344467888888877777555444..3333333333333333....45 PP

  Methyltransf_21  90 edaryievpvvtldsfleei....kksridllkiDvEGaElevLeGaqkglkrcqpnlivvEvhkfkefetelfdeirqflrecgy 171
                      + a+ +ev+v+t + +l  +    +  +id++ +DvE  El +L    + ++r+ ++l+ vE +  ++   +   ++ ++l+ +gy
       KOO21790.1 339 VVASSVEVRVTTPSLLLAGHratrDVAVIDYVSVDVEQLELAIL--RAWPFDRYCVRLFNVENEP-PDGAPSTLPQLKALLEPLGY 421
                      6677777777777734333224458999****************..8899999999998888654.44555666666666666666 PP

>> EF-hand_9  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.0   0.0   9.1e-09   1.8e-05       3      64 ..      91     150 ..      89     152 .. 0.92

  Alignments for each domain:
  == domain 1  score: 25.0 bits;  conditional E-value: 9.1e-09
   EF-hand_9   3 vFevcDtqktGrVpvsrlidyLravtaqdpeeseLeelakelDPdgedasvdldtflrvmre 64 
                 vF  +D +  G +  +++ ++L a    + +e +L +  +e+DPdg  + +dld f +v+++
  KOO21790.1  91 VFAKFDADGSGFIDTAEMRSVLTAAQI-EMSEEQLSTMMNEADPDGS-GAIDLDEFVTVLKK 150
                 6999******************99888.777889*************.***********986 PP

>> EF-hand_4  Cytoskeletal-regulatory complex EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   6.7e-05      0.13      25      70 ..     102     149 ..      86     154 .. 0.81

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 6.7e-05
   EF-hand_4  25 kltgdkvapvlknsk..leedklekiwdladidedgkldfeefciamr 70 
                  +   ++ +vl  ++  ++e++l+ + + ad d  g +d++ef+ +++
  KOO21790.1 102 FIDTAEMRSVLTAAQieMSEEQLSTMMNEADPDGSGAIDLDEFVTVLK 149
                 566677888888877225789**********************99876 PP

>> SPARC_Ca_bdg  Secreted protein acidic and rich in cysteine Ca binding region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   0.00013      0.25      53     111 ..      85     145 ..      56     147 .. 0.85

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.00013
  SPARC_Ca_bdg  53 kepvawkFsklDtnsdkvlsksELapl..raplvklehCikpflescDadkdkkislkEwc 111
                   + +++  F k+D +  ++++++E++++   a++   e+  +++++++D d  + i+l E++
    KOO21790.1  85 RAKLTPVFAKFDADGSGFIDTAEMRSVltAAQIEMSEEQLSTMMNEADPDGSGAIDLDEFV 145
                   55666679*****************98334578889999********************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (475 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       438  (0.0244297); expected 358.6 (0.02)
Passed bias filter:                      346  (0.0192983); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.52u 0.25s 00:00:00.77 Elapsed: 00:00:00.42
# Mc/sec: 3368.52
//
Query:       KOO21791.1  [L=257]
Description: tetratricopeptide tpr_1 repeat-containing protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    8.9e-15   54.1   0.5      9e-08   31.7   0.0    4.4  4  TPR_11    TPR repeat
    6.4e-08   32.5   0.8       0.51   10.8   0.1    4.7  5  TPR_17    Tetratricopeptide repeat
    3.4e-07   30.7   1.2    0.00075   20.0   0.2    2.6  2  TPR_19    Tetratricopeptide repeat
      9e-07   28.5   2.1      0.014   15.2   0.0    5.0  6  TPR_1     Tetratricopeptide repeat
    1.3e-05   24.9   7.0      0.058   13.5   0.0    5.7  6  TPR_2     Tetratricopeptide repeat
      2e-05   25.0   2.5      0.017   15.9   0.0    4.3  4  TPR_14    Tetratricopeptide repeat
    2.1e-05   25.1   6.1       0.21   12.2   1.8    3.7  5  TPR_16    Tetratricopeptide repeat
     0.0004   20.8   0.7      0.056   13.9   0.0    2.8  3  BTAD      Bacterial transcriptional activator domain
     0.0038   17.3   1.9         45    4.6   0.0    5.2  6  TPR_8     Tetratricopeptide repeat
  ------ inclusion threshold ------
       0.11   12.8   0.2        4.5    7.6   0.0    2.8  2  TPR_12    Tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> TPR_11  TPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.7   0.0     5e-11     9e-08       7      41 ..      68     102 ..      62     102 .. 0.94
   2 !    7.0   0.0    0.0026       4.6      17      39 ..     118     140 ..     115     142 .. 0.91
   3 !    9.4   0.0   0.00047      0.85      22      39 ..     158     175 ..     143     176 .. 0.90
   4 ?    0.5   0.0      0.28   4.9e+02      18      28 ..     198     208 ..     196     210 .. 0.86

  Alignments for each domain:
  == domain 1  score: 31.7 bits;  conditional E-value: 5e-11
      TPR_11   7 qGkyeeAieaYkkAlkldPdnaeayynLGlayykq 41 
                 qG++ +Aiea++ A++ +Pd+a ayy LG++++++
  KOO21791.1  68 QGDLVGAIEAFRSAIQAKPDFAYAYYRLGFVQHEL 102
                 9*******************************975 PP

  == domain 2  score: 7.0 bits;  conditional E-value: 0.0026
      TPR_11  17 YkkAlkldPdnaeayynLGlayy 39 
                 +k+Al+l+P +   +y  G+a++
  KOO21791.1 118 FKAALALNPWDEMSHYSFGQALQ 140
                 799*****************987 PP

  == domain 3  score: 9.4 bits;  conditional E-value: 0.00047
      TPR_11  22 kldPdnaeayynLGlayy 39 
                 k+++++a ay+ LG++++
  KOO21791.1 158 KINSKSAQAYWSLGKLLA 175
                 89*************986 PP

  == domain 4  score: 0.5 bits;  conditional E-value: 0.28
      TPR_11  18 kkAlkldPdna 28 
                 ++A +l+P n 
  KOO21791.1 198 EQAARLNPMNF 208
                 79******996 PP

>> TPR_17  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.2   0.0     0.018        33       9      34 .]      51      76 ..      49      76 .. 0.91
   2 !   10.8   0.1   0.00028      0.51       2      28 ..      78     104 ..      77     111 .. 0.81
   3 !   10.2   0.1   0.00045       0.8       2      33 ..     118     149 ..     117     150 .. 0.92
   4 ?   -0.3   0.0         1   1.9e+03       7      24 ..     158     175 ..     157     187 .. 0.82
   5 ?   -1.0   0.0       1.7   3.1e+03       1      10 [.     196     205 ..     196     209 .. 0.86

  Alignments for each domain:
  == domain 1  score: 5.2 bits;  conditional E-value: 0.018
      TPR_17  9 dPnnadaynnLAelllknGdlmtArq 34
                d++ a +++++++  +++Gdl  A++
  KOO21791.1 51 DKTLAMHHHQRGTMAHMQGDLVGAIE 76
                78999****************99985 PP

  == domain 2  score: 10.8 bits;  conditional E-value: 0.00028
      TPR_17   2 ylkaleldPnnadaynnLAelllknGd 28 
                 ++ a++  P+ a+ay+ L+ +++++ +
  KOO21791.1  78 FRSAIQAKPDFAYAYYRLGFVQHELRQ 104
                 56699***************9986554 PP

  == domain 3  score: 10.2 bits;  conditional E-value: 0.00045
      TPR_17   2 ylkaleldPnnadaynnLAelllknGdlmtAr 33 
                 ++ al+l+P +  +++  +++l    + ++A+
  KOO21791.1 118 FKAALALNPWDEMSHYSFGQALQDDERIAEAI 149
                 899********************999998887 PP

  == domain 4  score: -0.3 bits;  conditional E-value: 1
      TPR_17   7 eldPnnadaynnLAelll 24 
                 +++ ++a ay  L++ll+
  KOO21791.1 158 KINSKSAQAYWSLGKLLA 175
                 578899999999999997 PP

  == domain 5  score: -1.0 bits;  conditional E-value: 1.7
      TPR_17   1 lylkaleldP 10 
                 l+++a++l+P
  KOO21791.1 196 LFEQAARLNP 205
                 79*******9 PP

>> TPR_19  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.0   0.2   4.2e-07   0.00075       3      40 ..      67     104 ..      65     112 .. 0.86
   2 !    9.8   0.2   0.00063       1.1      10      58 ..     110     163 ..     101     176 .. 0.80

  Alignments for each domain:
  == domain 1  score: 20.0 bits;  conditional E-value: 4.2e-07
      TPR_19   3 aegdyaeAlalleqalqedpknaearllLAeallalgq 40 
                 ++gd+  A++++++a+q++p+ a+a ++L  ++ +l q
  KOO21791.1  67 MQGDLVGAIEAFRSAIQAKPDFAYAYYRLGFVQHELRQ 104
                 79*************************99777766655 PP

  == domain 2  score: 9.8 bits;  conditional E-value: 0.00063
      TPR_19  10 A....lalleqalqedpknaearllLAeallalgqldeAealLdalpeedpd.d 58 
                 A    ++++++al+ +p ++   +   +al    +++eA+a+ + +  +    +
  KOO21791.1 110 AnedpVPAFKAALALNPWDEMSHYSFGQALQDDERIAEAIAVFKGITSKINSkS 163
                 55555789***********************************99987766643 PP

>> TPR_1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.0     8e-06     0.014       4      34 .]      58      88 ..      55      88 .. 0.93
   2 ?    4.6   0.1     0.017        31       1      15 [.      89     103 ..      89     104 .. 0.86
   3 ?    2.8   0.0     0.066   1.2e+02      23      32 ..     117     126 ..     115     128 .. 0.86
   4 ?   -0.9   0.0      0.92   1.6e+03       8      24 ..     136     152 ..     131     153 .. 0.80
   5 ?   -2.2   0.0       2.4   4.3e+03       8      16 ..     164     172 ..     164     173 .. 0.84
   6 ?    0.1   0.0      0.45   8.1e+02      24      34 .]     197     207 ..     196     207 .. 0.87

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 8e-06
                HHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH CS
       TPR_1  4 lynlGnayfklgkydeAleyyekALelnPnn 34
                + ++G + + +g++  A+e+++ A++  P++
  KOO21791.1 58 HHQRGTMAHMQGDLVGAIEAFRSAIQAKPDF 88
                5689*************************97 PP

  == domain 2  score: 4.6 bits;  conditional E-value: 0.017
                 HHHHHHHHHHHHHTT CS
       TPR_1   1 akalynlGnayfklg 15 
                 a+a+y+lG + ++l 
  KOO21791.1  89 AYAYYRLGFVQHELR 103
                 79******9998875 PP

  == domain 3  score: 2.8 bits;  conditional E-value: 0.066
                 HHHHHHHHST CS
       TPR_1  23 yyekALelnP 32 
                 +++ AL lnP
  KOO21791.1 117 AFKAALALNP 126
                 89******** PP

  == domain 4  score: -0.9 bits;  conditional E-value: 0.92
                 HHHHHHTT-HHHHHHHH CS
       TPR_1   8 GnayfklgkydeAleyy 24 
                 G+a++  ++  eA++ +
  KOO21791.1 136 GQALQDDERIAEAIAVF 152
                 78888889999999866 PP

  == domain 5  score: -2.2 bits;  conditional E-value: 2.4
                 HHHHHHTT- CS
       TPR_1   8 Gnayfklgk 16 
                 ++ay +lgk
  KOO21791.1 164 AQAYWSLGK 172
                 689*99998 PP

  == domain 6  score: 0.1 bits;  conditional E-value: 0.45
                 HHHHHHHSTTH CS
       TPR_1  24 yekALelnPnn 34 
                 +e+A +lnP n
  KOO21791.1 197 FEQAARLNPMN 207
                 99*******65 PP

>> TPR_2  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.5   0.0   3.2e-05     0.058       4      33 ..      58      87 ..      58      88 .. 0.94
   2 ?    2.3   0.3      0.13   2.3e+02       1      14 [.      89     102 ..      89     105 .. 0.76
   3 ?    2.0   0.1      0.16   2.8e+02      23      32 ..     117     126 ..     115     126 .. 0.92
   4 ?    3.0   0.0     0.076   1.4e+02       4      25 ..     132     153 ..     130     153 .. 0.88
   5 ?   -1.5   0.0       2.1   3.7e+03       8      16 ..     164     172 ..     159     176 .. 0.63
   6 ?    2.3   0.0      0.13   2.3e+02      23      32 ..     196     205 ..     195     207 .. 0.87

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 3.2e-05
       TPR_2  4 lynlGlayyklgdyeeAleafekAleldPn 33
                ++++G  +  +gd+  A+eaf+ A++  P+
  KOO21791.1 58 HHQRGTMAHMQGDLVGAIEAFRSAIQAKPD 87
                6899**********************9997 PP

  == domain 2  score: 2.3 bits;  conditional E-value: 0.13
       TPR_2   1 aealynlGlayykl 14 
                 a+a+y+lG +  +l
  KOO21791.1  89 AYAYYRLGFVQHEL 102
                 67899999887766 PP

  == domain 3  score: 2.0 bits;  conditional E-value: 0.16
       TPR_2  23 afekAleldP 32 
                 af++Al+l+P
  KOO21791.1 117 AFKAALALNP 126
                 79*******9 PP

  == domain 4  score: 3.0 bits;  conditional E-value: 0.076
       TPR_2   4 lynlGlayyklgdyeeAleafe 25 
                 +y  G+a+    + +eA++ f+
  KOO21791.1 132 HYSFGQALQDDERIAEAIAVFK 153
                 677799************9985 PP

  == domain 5  score: -1.5 bits;  conditional E-value: 2.1
       TPR_2   8 Glayyklgd 16 
                 ++ay+ lg+
  KOO21791.1 164 AQAYWSLGK 172
                 555555554 PP

  == domain 6  score: 2.3 bits;  conditional E-value: 0.13
       TPR_2  23 afekAleldP 32 
                 +fe+A +l+P
  KOO21791.1 196 LFEQAARLNP 205
                 69*******9 PP

>> TPR_14  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.0   9.3e-06     0.017      12      43 ..      66      97 ..      58      98 .. 0.88
   2 ?    2.8   0.1      0.15   2.7e+02      23      36 ..     117     130 ..     115     138 .. 0.84
   3 ?    2.5   0.0      0.19   3.5e+02       8      37 ..     136     166 ..     131     173 .. 0.71
   4 ?    0.8   0.0      0.68   1.2e+03       8      38 ..     164     196 ..     158     203 .. 0.61

  Alignments for each domain:
  == domain 1  score: 15.9 bits;  conditional E-value: 9.3e-06
      TPR_14 12 lalGdpdeAiallrralalaPddaeawlllaq 43
                  +Gd+ +Ai+++r a+++ Pd+a a+++l++
  KOO21791.1 66 HMQGDLVGAIEAFRSAIQAKPDFAYAYYRLGF 97
                5689*************************986 PP

  == domain 2  score: 2.8 bits;  conditional E-value: 0.15
      TPR_14  23 llrralalaPddae 36 
                 ++++alal+P+d+ 
  KOO21791.1 117 AFKAALALNPWDEM 130
                 89********9975 PP

  == domain 3  score: 2.5 bits;  conditional E-value: 0.19
      TPR_14   8 aeallalGdpdeAiallrralal.aPddaea 37 
                 ++al   ++ +eAia+++ + ++ + ++a+a
  KOO21791.1 136 GQALQDDERIAEAIAVFKGITSKiNSKSAQA 166
                 6888888999999999998877435555555 PP

  == domain 4  score: 0.8 bits;  conditional E-value: 0.68
      TPR_14   8 aeallalGd.pdeAiallrr.alalaPddaeaw 38 
                 a+a++ lG+ +++ ++ ++      aPdd+ ++
  KOO21791.1 164 AQAYWSLGKlLARGVDEFDSdSDTNAPDDPSLL 196
                 677887776236666655554444456666655 PP

>> TPR_16  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.8   0.0   0.00016      0.28      40      66 ..      61      87 ..      55      87 .. 0.92
   2 !   12.2   1.8   0.00012      0.21      10      47 ..      68     102 ..      67     126 .. 0.87
   3 !    8.5   0.2    0.0017       3.1      18      58 ..     116     153 ..     102     155 .. 0.93
   4 !   11.5   0.1   0.00021      0.38       1      46 [.     133     176 ..     133     180 .. 0.92
   5 ?   -3.7   0.0        10   1.8e+04      20      27 ..     197     204 ..     196     206 .. 0.66

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 0.00016
      TPR_16 40 lgdaalrqgrlaeAaalyraalraapd 66
                +g +a  qg+l +A++++r+a++a pd
  KOO21791.1 61 RGTMAHMQGDLVGAIEAFRSAIQAKPD 87
                678899*****************9997 PP

  == domain 2  score: 12.2 bits;  conditional E-value: 0.00012
      TPR_16  10 agdyddAaaaleaalkrdpssPdaaeAllllgdaalrq 47 
                 +gd   A++a++ a+ +    Pd a A++ lg +  ++
  KOO21791.1  68 QGDLVGAIEAFRSAIQAK---PDFAYAYYRLGFVQHEL 102
                 799999************...***********998766 PP

  == domain 3  score: 8.5 bits;  conditional E-value: 0.0017
      TPR_16  18 aaleaalkrdpssPdaaeAllllgdaalrqgrlaeAaalyr 58 
                 +a++aal+++   P +  +++  g+a+    r aeA+a+++
  KOO21791.1 116 PAFKAALALN---PWDEMSHYSFGQALQDDERIAEAIAVFK 153
                 89********...88899*******************9986 PP

  == domain 4  score: 11.5 bits;  conditional E-value: 0.00021
      TPR_16   1 lalaraalragdyddAaaal.eaalkrdpssPdaaeAllllgdaalr 46 
                 +  ++a+ +  + ++A+a++  ++ k +   +  a+A++ lg +++r
  KOO21791.1 133 YSFGQALQDDERIAEAIAVFkGITSKIN---SKSAQAYWSLGKLLAR 176
                 66899***************88999999...99**********9997 PP

  == domain 5  score: -3.7 bits;  conditional E-value: 10
      TPR_16  20 leaalkrd 27 
                 +e+a +++
  KOO21791.1 197 FEQAARLN 204
                 67777777 PP

>> BTAD  Bacterial transcriptional activator domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.0   0.0     0.036        64       4      34 ..      53      83 ..      50      84 .. 0.87
   2 !   13.9   0.0   3.1e-05     0.056      79     122 ..     112     155 ..      94     161 .. 0.87
   3 ?   -1.2   0.1       1.4   2.4e+03      51      74 ..     222     245 ..     208     256 .. 0.56

  Alignments for each domain:
  == domain 1  score: 4.0 bits;  conditional E-value: 0.036
                HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHT CS
        BTAD  4 arfealvaagraalaagdpeeaaelleaAla 34
                +   ++ ++g+ a+ +gd  +a+e+++ A++
  KOO21791.1 53 TLAMHHHQRGTMAHMQGDLVGAIEAFRSAIQ 83
                55668899********************986 PP

  == domain 2  score: 13.9 bits;  conditional E-value: 3.1e-05
                 HHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHH CS
        BTAD  79 eealaelealvaehPlrErlhrqlmrAlarsGrqaeALevYerl 122
                 e+ ++  +a++a++P++E +h    +Al   +r aeA++v++ +
  KOO21791.1 112 EDPVPAFKAALALNPWDEMSHYSFGQALQDDERIAEAIAVFKGI 155
                 46688899********************************9875 PP

  == domain 3  score: -1.2 bits;  conditional E-value: 1.4
                 HHHHHHHHHHHHHHHHHHHHHHHH CS
        BTAD  51 eaererleelrlealealaeaelr 74 
                 ++e+e+ ee+ ++  ++++  e++
  KOO21791.1 222 TPEVEQREEREVQKRRERILDEMH 245
                 344444444444444444444444 PP

>> TPR_8  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.6   0.0     0.025        45      19      33 ..      73      87 ..      59      88 .. 0.84
   2 ?    0.7   0.1      0.46   8.3e+02       1      16 [.      89     104 ..      89     106 .. 0.78
   3 ?   -1.8   0.0       2.9   5.2e+03      23      32 ..     117     126 ..     115     126 .. 0.86
   4 ?    4.2   0.0     0.034        61       4      25 ..     132     153 ..     131     156 .. 0.91
   5 ?    1.5   0.0      0.26   4.6e+02       8      17 ..     164     173 ..     158     175 .. 0.78
   6 ?   -2.3   0.0         4   7.2e+03      24      32 ..     197     205 ..     196     205 .. 0.90

  Alignments for each domain:
  == domain 1  score: 4.6 bits;  conditional E-value: 0.025
                HHHHHHHHHHHHHHH CS
       TPR_8 19 eAkeyyekaleldpd 33
                 A+e+++ a++++pd
  KOO21791.1 73 GAIEAFRSAIQAKPD 87
                69***********98 PP

  == domain 2  score: 0.7 bits;  conditional E-value: 0.46
                 CCHHHHHHHHHHHTT- CS
       TPR_8   1 aeayynlgsiylklgd 16 
                 a ayy+lg + ++l +
  KOO21791.1  89 AYAYYRLGFVQHELRQ 104
                 569****998888765 PP

  == domain 3  score: -1.8 bits;  conditional E-value: 2.9
                 HHHHHHHHHH CS
       TPR_8  23 yyekaleldp 32 
                 +++ al l+p
  KOO21791.1 117 AFKAALALNP 126
                 8999**9998 PP

  == domain 4  score: 4.2 bits;  conditional E-value: 0.034
                 HHHHHHHHHHTT-HHHHHHHHH CS
       TPR_8   4 yynlgsiylklgdyeeAkeyye 25 
                 +y  g+++++ +++ eA+++++
  KOO21791.1 132 HYSFGQALQDDERIAEAIAVFK 153
                 6889***************997 PP

  == domain 5  score: 1.5 bits;  conditional E-value: 0.26
                 HHHHHHTT-H CS
       TPR_8   8 gsiylklgdy 17 
                 +++y++lg++
  KOO21791.1 164 AQAYWSLGKL 173
                 7899999875 PP

  == domain 6  score: -2.3 bits;  conditional E-value: 4
                 HHHHHHHHH CS
       TPR_8  24 yekaleldp 32 
                 +e+a +l+p
  KOO21791.1 197 FEQAARLNP 205
                 89**99998 PP

>> TPR_12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.6   0.0    0.0025       4.5      44      74 ..      54      84 ..      49      87 .. 0.76
   2 ?    1.8   0.1      0.17     3e+02       8      26 ..     134     152 ..     128     176 .. 0.66

  Alignments for each domain:
  == domain 1  score: 7.6 bits;  conditional E-value: 0.0025
      TPR_12 44 tattlrnLgrlyralgryeeAlelleealai 74
                +a   +  g++ +++g++  A+e+++ a+++
  KOO21791.1 54 LAMHHHQRGTMAHMQGDLVGAIEAFRSAIQA 84
                5667788888888888888888888888876 PP

  == domain 2  score: 1.8 bits;  conditional E-value: 0.17
      TPR_12   8 nlaavlrrlgrydeAlell 26 
                   +++l+  +r +eA++ +
  KOO21791.1 134 SFGQALQDDERIAEAIAVF 152
                 3455555555555555544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (257 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       811  (0.045234); expected 358.6 (0.02)
Passed bias filter:                      582  (0.0324614); expected 358.6 (0.02)
Passed Vit filter:                        66  (0.00368119); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.49u 0.25s 00:00:00.74 Elapsed: 00:00:00.43
# Mc/sec: 1797.72
//
Query:       KOO21792.1  [L=123]
Description: hypothetical protein Ctob_001113 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      2e-13   48.8   0.0    1.5e-05   24.2   0.0    2.2  2  EF-hand_1   EF hand
    4.5e-12   44.9   0.0    4.6e-06   26.1   0.0    2.3  2  EF-hand_6   EF-hand domain
    2.8e-10   40.5   0.0    3.8e-10   40.1   0.0    1.2  1  EF-hand_7   EF-hand domain pair
    4.1e-10   38.7   0.4    4.2e-05   22.8   0.1    2.2  2  EF-hand_5   EF hand
    8.3e-08   32.0   0.0    3.8e-05   23.4   0.0    2.2  2  EF-hand_8   EF-hand domain pair
     0.0064   16.7   0.1       0.01   16.0   0.1    1.3  1  Sun2_CC2    SUN2 coiled coil domain 2
  ------ inclusion threshold ------
       0.01   15.7   0.0        2.2    8.2   0.0    2.1  2  EF-hand_10  EF hand


Domain annotation for each model (and alignments):
>> EF-hand_1  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.2   0.0     6e-09   1.5e-05       5      28 ..      48      71 ..      46      72 .. 0.93
   2 !   22.8   0.0   1.6e-08   4.1e-05       4      28 ..      84     108 ..      81     109 .. 0.91

  Alignments for each domain:
  == domain 1  score: 24.2 bits;  conditional E-value: 6e-09
                HHHHHTTTSSSEEEHHHHHHHHHH CS
   EF-hand_1  5 iFrefDkDgdGkIdfeEfkellkk 28
                +F+++DkDg+G +d +E+ e+lk+
  KOO21792.1 48 LFKKLDKDGSGSVDAKELAEALKA 71
                7********************996 PP

  == domain 2  score: 22.8 bits;  conditional E-value: 1.6e-08
                 HHHHHHTTTSSSEEEHHHHHHHHHH CS
   EF-hand_1   4 eiFrefDkDgdGkIdfeEfkellkk 28 
                  i++e+DkDg+G I+++E+  +l+k
  KOO21792.1  84 AIIKEADKDGNGSIEINELAGVLTK 108
                 69*****************999986 PP

>> EF-hand_6  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.1   0.0   1.8e-09   4.6e-06       5      29 ..      48      71 ..      46      73 .. 0.92
   2 !   16.5   0.0   2.2e-06    0.0056       7      28 ..      87     108 ..      82     115 .. 0.88

  Alignments for each domain:
  == domain 1  score: 26.1 bits;  conditional E-value: 1.8e-09
   EF-hand_6  5 aFklfDkdgdGkidaeElrkalrka 29
                +Fk++Dkdg+G++da+El  al+ a
  KOO21792.1 48 LFKKLDKDGSGSVDAKELAEALK-A 71
                8*********************9.5 PP

  == domain 2  score: 16.5 bits;  conditional E-value: 2.2e-06
   EF-hand_6   7 klfDkdgdGkidaeElrkalrk 28 
                 k+ Dkdg+G+i ++El  +l+k
  KOO21792.1  87 KEADKDGNGSIEINELAGVLTK 108
                 678****************995 PP

>> EF-hand_7  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.1   0.0   1.5e-13   3.8e-10       7      67 ..      48     103 ..      44     107 .. 0.94

  Alignments for each domain:
  == domain 1  score: 40.1 bits;  conditional E-value: 1.5e-13
   EF-hand_7   7 aFkelDtdgdgyldkeellrllrkifqgagegsklsdeelellfkefDtdkdGvisfdEFl 67 
                  Fk+lD+dg+g++d  el ++l++       + k++ e+  +++ke D+d++G+i  +E+ 
  KOO21792.1  48 LFKKLDKDGSGSVDAKELAEALKA-----AGATKVTVEQAAAIIKEADKDGNGSIEINELA 103
                 4**********************9.....999999**********************9975 PP

>> EF-hand_5  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.8   0.1   1.7e-08   4.2e-05       3      23 ..      47      67 ..      45      70 .. 0.88
   2 !   14.2   0.0   9.1e-06     0.023       5      23 ..      86     104 ..      83     106 .. 0.85

  Alignments for each domain:
  == domain 1  score: 22.8 bits;  conditional E-value: 1.7e-08
                HHHHHH-SS-SSCE-HHHHHH CS
   EF-hand_5  3 dtFqaiDlNgDGkIskeELkt 23
                ++F+++D++g+G +++ EL +
  KOO21792.1 47 ALFKKLDKDGSGSVDAKELAE 67
                58*****************76 PP

  == domain 2  score: 14.2 bits;  conditional E-value: 9.1e-06
                 HHHH-SS-SSCE-HHHHHH CS
   EF-hand_5   5 FqaiDlNgDGkIskeELkt 23 
                  +++D++g G I + EL  
  KOO21792.1  86 IKEADKDGNGSIEINELAG 104
                 5789************975 PP

>> EF-hand_8  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.6   0.0   3.5e-05      0.09      29      52 ..      46      69 ..      44      72 .. 0.88
   2 !   23.4   0.0   1.5e-08   3.8e-05       2      53 ..      57     107 ..      57     109 .. 0.88

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 3.5e-05
   EF-hand_8 29 dilfrefDtdgdGkisfeEFcvll 52
                 +lf+++D dg+G ++ +E  + l
  KOO21792.1 46 SALFKKLDKDGSGSVDAKELAEAL 69
                589**************9998776 PP

  == domain 2  score: 23.4 bits;  conditional E-value: 1.5e-08
   EF-hand_8   2 kgkItreelrril.rilglkkglseeevdilfrefDtdgdGkisfeEFcvlle 53 
                 +g+++  el ++l ++ g  k ++ e++ ++++e+D dg+G i  +E   +l+
  KOO21792.1  57 SGSVDAKELAEALkAA-GATK-VTVEQAAAIIKEADKDGNGSIEINELAGVLT 107
                 5899*********777.6553.*********************9999988776 PP

>> Sun2_CC2  SUN2 coiled coil domain 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.1     4e-06      0.01      23      55 ..      59      89 ..      46      91 .. 0.80

  Alignments for each domain:
  == domain 1  score: 16.0 bits;  conditional E-value: 4e-06
    Sun2_CC2 23 sardaaasvgvaLqkeGvtgvTeeqVhrIVnrA 55
                s+ d a+ + +aL+++G+t vT+eq  +I+++A
  KOO21792.1 59 SV-D-AKELAEALKAAGATKVTVEQAAAIIKEA 89
                44.3.57899********************998 PP

>> EF-hand_10  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.2   0.0   0.00086       2.2      25      45 ..      47      67 ..      45      71 .. 0.89
   2 ?    5.5   0.0    0.0061        16      23      43 ..      82     102 ..      76     106 .. 0.88

  Alignments for each domain:
  == domain 1  score: 8.2 bits;  conditional E-value: 0.00086
  EF-hand_10 25 kLFkkcDkSksgrLegeEiee 45
                 LFkk Dk  sg+ + +E+ e
  KOO21792.1 47 ALFKKLDKDGSGSVDAKELAE 67
                69****************976 PP

  == domain 2  score: 5.5 bits;  conditional E-value: 0.0061
  EF-hand_10  23 AekLFkkcDkSksgrLegeEi 43 
                 A  + k++Dk  +g++e +E+
  KOO21792.1  82 AAAIIKEADKDGNGSIEINEL 102
                 78899************9996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (123 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       808  (0.0450667); expected 358.6 (0.02)
Passed bias filter:                      586  (0.0326845); expected 358.6 (0.02)
Passed Vit filter:                        55  (0.00306766); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.40u 0.25s 00:00:00.65 Elapsed: 00:00:00.40
# Mc/sec: 921.32
//
Query:       KOO21793.1  [L=456]
Description: hypothetical protein Ctob_001112 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
          2    8.2   8.2        4.1    7.2   2.3    2.2  2  DUF724    Protein of unknown function (DUF724)


Domain annotation for each model (and alignments):
>> DUF724  Protein of unknown function (DUF724)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.3   0.4    0.0017        31     109     169 ..     106     166 ..      95     185 .. 0.66
   2 ?    7.2   2.3   0.00023       4.1     102     170 ..     343     408 ..     339     414 .. 0.82

  Alignments for each domain:
  == domain 1  score: 4.3 bits;  conditional E-value: 0.0017
      DUF724 109 eerkklekkieeeesekrkleeeidelekkilelerqlallkekkeaadkeiarlkseaek 169
                  e+ +  + +   +++ + +++ +++ e k+ +l+ +la + + + aa++e+++ +   e+
  KOO21793.1 106 PEKGGPASATDASAARLAAADAAFSKEEAKVEDLRAKLAKAEASRAAAEEELSAARLAHEA 166
                 5555555566666777777888888888888888888888887777777777665544433 PP

  == domain 2  score: 7.2 bits;  conditional E-value: 0.00023
      DUF724 102 deqtklleerkklekkieeeesekrkleeeidelekkilelerqlallkekkeaadkeiarlkseaekl 170
                 de +++++++++lek +ee ++++r  ++e+++ ++  +e+er +++++++  a+++e+ rl+  a+ +
  KOO21793.1 343 DEAARCQRRLERLEKVVEEGSASRR--QAEFEHENEMAREIERAREAVRAQ-AAESAELRRLEEAASLA 408
                 67789999*********99999888..577888888889999999988855.58889999999887755 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (456 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1157  (0.0645323); expected 358.6 (0.02)
Passed bias filter:                      509  (0.0283898); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.56u 0.26s 00:00:00.82 Elapsed: 00:00:00.41
# Mc/sec: 3299.35
//
Query:       KOO21794.1  [L=479]
Description: hypothetical protein Ctob_001111 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    9.2e-36  123.6   0.1    2.1e-35  122.4   0.1    1.6  1  GpcrRhopsn4  Rhodopsin-like GPCR transmembrane domain


Domain annotation for each model (and alignments):
>> GpcrRhopsn4  Rhodopsin-like GPCR transmembrane domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  122.4   0.1   1.2e-39   2.1e-35       3     256 ..     155     430 ..     153     431 .. 0.90

  Alignments for each domain:
  == domain 1  score: 122.4 bits;  conditional E-value: 1.2e-39
  GpcrRhopsn4   3 kleyeltllNggdflkshfSadeqgilelflvlvl.lyivlliinivvikalkkreekhtvlkllsvslllelislllllihlivYaynGigi..... 94 
                   ++ye+tllNg+    sh+ ade+g+ ++ lv+++ +  + +++ +++i ++ + ++ h  + l+++++ ++++ +l+ ++hl ++a+ G+g+     
   KOO21794.1 155 SMHYEITLLNGK----SHLPADESGMTTMNLVVFIgMAAYGTFYFGRAIARMYELGQAHLLTLLFALAYAMQTVAVLCEMLHLRRFASGGKGLrwrnt 248
                  589********6....*************998887255667777777789999***************************************733222 PP

  GpcrRhopsn4  95 .ellqilgeildilsqilfllLLlllakGWtitraklssl....................stvillvlivlivvlqvilvileekfefdsaskihsye 171
                   + l+ ++ +l+++s+ +  ++L+ l+ GWt    + + l                      + ++ l + i+++q+ l+ +  ++  +  +k+h++e
   KOO21794.1 249 vFALDFFSGLLQSVSEPIISVMLIALGFGWTLGLESQEPLsgqlgkllaglhspgkllrsALTPSTLLLGTIAAAQLGLLAM-GRRYEEDFNKFHDFE 345
                  2468899*************************99999888999**************986556678899999999******9.5556666789***** PP

  GpcrRhopsn4 172 slaGylllalrivlaiyFlyglrntikkekskkkkqFllkfgivgllwflsfPvlviiavfvdpyvrekvitigtilvqlvaiiv 256
                    +G  ll +r++l  +F ++lr+++++e++k +++F+  ++++g++wf  +P+lv+ a ++ py r++v+ +g++lvq+v + +
   KOO21794.1 346 HAPGLALLGIRLALCALFGWALRRSLRVERQKDVRDFFGALAFFGSIWFAGLPILVLFALVLPPYRRHQVVAGGSVLVQAVTLAL 430
                  ********************************************************************************98876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (479 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       539  (0.030063); expected 358.6 (0.02)
Passed bias filter:                      355  (0.0198003); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.51u 0.24s 00:00:00.75 Elapsed: 00:00:00.40
# Mc/sec: 3569.65
//
Query:       KOO21795.1  [L=195]
Description: hypothetical protein Ctob_001110 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (195 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       733  (0.0408835); expected 358.6 (0.02)
Passed bias filter:                      383  (0.021362); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.39u 0.27s 00:00:00.66 Elapsed: 00:00:00.40
# Mc/sec: 1460.23
//
Query:       KOO21796.1  [L=128]
Description: hypothetical protein Ctob_001108 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (128 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1344  (0.0749624); expected 358.6 (0.02)
Passed bias filter:                      518  (0.0288917); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.25s 00:00:00.63 Elapsed: 00:00:00.39
# Mc/sec: 979.94
//
Query:       KOO21797.1  [L=439]
Description: sec14-like cytosolic factor or phosphatidylinositol phosphatidylcholine transfer protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.1e-13   51.2   0.1    1.5e-13   50.8   0.1    1.2  1  CRAL_TRIO  CRAL/TRIO domain


Domain annotation for each model (and alignments):
>> CRAL_TRIO  CRAL/TRIO domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.8   0.1   8.4e-18   1.5e-13      10     141 ..     253     392 ..     246     417 .. 0.88

  Alignments for each domain:
  == domain 1  score: 50.8 bits;  conditional E-value: 8.4e-18
   CRAL_TRIO  10 gihgrDkegrpvlylrlgrfdpk....klsleelvralvlvlerllkelee....dgqvegvtvviDlkglslskmlwkpisllkkilkilqdnyperl 100
                 ++ +r  ++ pv ++r+g+ + k     ++++e+v+ + +  e+l+++++e    +++  +++   D++  ++ + +++ ++ l + +k  + +yp  l
  KOO21797.1 253 VYSQRTTMDEPVQLIRAGKSNVKklmdLFTEDEVVESMNFQKEQLFLMCDEatrrTRRLVKMVTCLDMHSSKFTDNDKRFFKALGRASKDSELYYPQLL 351
                 6677888999*************999555699********************9999999999999************999******************* PP

   CRAL_TRIO 101 gkilivnaPklfkfafklvkpfldektreKikfvspsntea 141
                 +  + +n+P++ + ++ ++k ++++kt  K++++s  nt  
  KOO21797.1 352 QITVAINVPSYLNLIWPIAKRVMPAKTLAKFRICSARNTLT 392
                 ************************************99954 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (439 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       438  (0.0244297); expected 358.6 (0.02)
Passed bias filter:                      327  (0.0182386); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.23s 00:00:00.69 Elapsed: 00:00:00.37
# Mc/sec: 3520.01
//
Query:       KOO21798.1  [L=300]
Description: hypothetical protein Ctob_001106 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    8.4e-05   22.3   0.0    0.00015   21.6   0.0    1.4  1  PDZ_6           PDZ domain
    0.00044   20.5   0.0    0.00091   19.5   0.0    1.6  1  PDZ             PDZ domain
  ------ inclusion threshold ------
       0.16   12.3   0.0       0.28   11.5   0.0    1.4  1  PDZ_2           PDZ domain
        6.4    4.3  10.9        8.1    4.0  10.9    1.1  1  TALPID3         Hedgehog signalling target


Domain annotation for each model (and alignments):
>> PDZ_6  PDZ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.6   0.0   3.2e-08   0.00015       2      45 ..     100     141 ..      99     150 .. 0.79

  Alignments for each domain:
  == domain 1  score: 21.6 bits;  conditional E-value: 3.2e-08
       PDZ_6   2 VtaVdpgsPAdrAGlrvGDiilsvNGqpveglsladvaallrgs 45 
                 + +  pgs +++ G+ +GD il +NG+       a++ + + +s
  KOO21798.1 100 ICSFHPGSLGEKEGILIGDEILTINGEKP--AGHAEAGQKILSS 141
                 56668**********************98..7777777777644 PP

>> PDZ  PDZ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.5   0.0     2e-07   0.00091       5      63 ..      80     133 ..      69     147 .. 0.79

  Alignments for each domain:
  == domain 1  score: 19.5 bits;  conditional E-value: 2e-07
                 ETS.TTSESSEEEEEETTSSSSSSEEEEEECTTSHHHHHTSSTTEEEEEETTEETTTSHH CS
         PDZ   5 eke.grgglGfslkggsdqrgdkgifvsevlpggaaeadglkvGDkIlsvNgvdvenvsh 63 
                 eke  +++lG+   g        +  +++  pg+  e+ g+ +GD+Il +Ng++ +++++
  KOO21798.1  80 EKEaAEKRLGLIMTG------TSTPRICSFHPGSLGEKEGILIGDEILTINGEKPAGHAE 133
                 444455555555555......335789*************************99888865 PP

>> PDZ_2  PDZ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   6.3e-05      0.28      14      54 ..      96     136 ..      75     143 .. 0.78

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 6.3e-05
                 .-EEEEEE-TTSGGGGT.--TT-EEEEETTB--SSHHHHHH CS
       PDZ_2  14 ggvlvvsVkeggPaakaglkagDvilkvdgkkvksledlis 54 
                 +   + s ++g+  +k+g+ +gD+il ++g k    ++  +
  KOO21798.1  96 STPRICSFHPGSLGEKEGILIGDEILTINGEKPAGHAEAGQ 136
                 456677778888889***************99876666555 PP

>> TALPID3  Hedgehog signalling target
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.0  10.9    0.0018       8.1     950     997 ..      21      69 ..       4     101 .. 0.73

  Alignments for each domain:
  == domain 1  score: 4.0 bits;  conditional E-value: 0.0018
     TALPID3 950 ptPvptPqptppqsP.pssekelspvktPdsSpseseadgavsskekea 997
                 p+Pvp P+p p+++P ps++    pv  P +S++++e  +a s  e+++
  KOO21798.1  21 PAPVPAPEPVPEPAPaPSPATSEAPVTAPATSEETAEPVAAKSATESST 69 
                 577777777777776345567889*********9999877766666654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (300 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       576  (0.0321267); expected 358.6 (0.02)
Passed bias filter:                      442  (0.0246528); expected 358.6 (0.02)
Passed Vit filter:                        57  (0.00317921); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.51u 0.24s 00:00:00.75 Elapsed: 00:00:00.72
# Mc/sec: 1248.66
//
Query:       KOO21799.1  [L=185]
Description: hypothetical protein Ctob_001107 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
     0.0018   18.2   3.1     0.0049   16.8   3.0    1.7  1  ETF       Electron transfer flavoprotein domain


Domain annotation for each model (and alignments):
>> ETF  Electron transfer flavoprotein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   3.0   2.7e-07    0.0049      19      88 ..      40     111 ..      33     140 .. 0.72

  Alignments for each domain:
  == domain 1  score: 16.8 bits;  conditional E-value: 2.7e-07
                 HHHHHHHHHHHH.HT.--EEEEEEES....S-CHHHHHHCT-SEEEEEE-GGGSS-..-CCHHHHHHHHHHHHC CS
         ETF  19 ealeaArrlkek.ag.gevtavvvGppeaeealrealaamGadkvilvddpalagy..daeatakalaalikke 88 
                 + +eaA++l+++ +   +v+++v+ +   e  +++a a  Ga++v+ ++ +a      d ea  k+ a++i   
  KOO21799.1  40 NQIEAALQLADTpGPaRRVHVFVASDT--EHGVARARAVLGAARVLTISGRAVHSTrdDGEAARKVAADFIGLA 111
                 669*********744578999999993..3334555555*************9766667777777777777655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (185 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       313  (0.0174578); expected 358.6 (0.02)
Passed bias filter:                      242  (0.0134977); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.22s 00:00:00.63 Elapsed: 00:00:00.40
# Mc/sec: 1372.88
//
Query:       KOO21800.1  [L=592]
Description: hypothetical protein Ctob_004240 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
     0.0028   17.3   0.0     0.0046   16.6   0.0    1.4  1  HeH       HeH/LEM domain
  ------ inclusion threshold ------
      0.017   14.9   0.0       0.03   14.1   0.0    1.4  1  SAP       SAP domain


Domain annotation for each model (and alignments):
>> HeH  HeH/LEM domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   0.0   5.2e-07    0.0046       1      22 [.       6      27 ..       6      29 .. 0.90

  Alignments for each domain:
  == domain 1  score: 16.6 bits;  conditional E-value: 5.2e-07
         HeH  1 pksLtVaqLRriLvehgveyPs 22
                p+ L+V++L++iL e +v + +
  KOO21800.1  6 PSRLKVSELKAILRERNVAFEA 27
                788***************9976 PP

>> SAP  SAP domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   0.0   3.4e-06      0.03       2      17 ..       7      22 ..       6      24 .. 0.91

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 3.4e-06
                TT--HHHHHHHHHHTT CS
         SAP  2 skltVaeLKeeLkkrG 17
                s l+V+eLK++L++r+
  KOO21800.1  7 SRLKVSELKAILRERN 22
                78*************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (592 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       312  (0.017402); expected 358.6 (0.02)
Passed bias filter:                      250  (0.0139439); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.54u 0.24s 00:00:00.78 Elapsed: 00:00:00.41
# Mc/sec: 4286.18
//
Query:       KOO21801.1  [L=178]
Description: hypothetical protein Ctob_004241 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (178 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       313  (0.0174578); expected 358.6 (0.02)
Passed bias filter:                      250  (0.0139439); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.40u 0.25s 00:00:00.65 Elapsed: 00:00:00.42
# Mc/sec: 1264.46
//
Query:       KOO21802.1  [L=509]
Description: hsp20-like chaperone domain-containing protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.9e-13   50.4   0.1    3.6e-13   49.5   0.1    1.4  1  HSP20       Hsp20/alpha crystallin family
    0.00083   18.9   0.0     0.0029   17.1   0.0    1.9  1  ArsA_HSP20  HSP20-like domain found in ArsA
      0.001   19.1   0.1     0.0039   17.3   0.1    1.9  2  MMR_HSR1    50S ribosome-binding GTPase
     0.0011   18.3   1.8     0.0077   15.5   0.0    2.1  2  GBP         Guanylate-binding protein, N-terminal domain
     0.0048   17.0   1.2        1.1    9.3   0.1    2.9  3  Dynamin_N   Dynamin family


Domain annotation for each model (and alignments):
>> HSP20  Hsp20/alpha crystallin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.5   0.1     1e-16   3.6e-13       1      93 [.     404     500 ..     404     508 .. 0.94

  Alignments for each domain:
  == domain 1  score: 49.5 bits;  conditional E-value: 1e-16
                 E--SSEEEEEEEEE-TT--CCCEEEEEETTEEEEEEE--......---TT----SS---EEEEEE--STTB-TTT-EEEEETTEEEEEEEBSS--.. CS
       HSP20   1 dikeeeeefevkldvpglkkeelkvkvednrvlvkgehe....eeeedekglikerssrkFsrkftLPenvdadkvkaslkdGvLtvtvpkkepekk 93 
                 di++e++++++ +d+pg+ ++ +k++ ++ + +vkg++e    ++e    + ++er++++F+++f++Pe++     +a++++GvL++   k e+e++
  KOO21802.1 404 DIVREPDAYNIYMDLPGMTRDQVKLSRQNVVTIVKGTREsglsDREIATSVTRQERKAGEFTMTFRIPEEYQRRWESADMENGVLRIRYLKDEEEEE 500
                 6899***********************************99998999999**************************************999999876 PP

>> ArsA_HSP20  HSP20-like domain found in ArsA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   0.0   8.1e-07    0.0029       2      62 ..     410     491 ..     409     492 .. 0.89

  Alignments for each domain:
  == domain 1  score: 17.1 bits;  conditional E-value: 8.1e-07
  ArsA_HSP20   2 deyvlkldLPfvdkeeidlsrsgdeLtIkig......................nfrRqitLPsvlarkevtsAkfedgvLeIr 62 
                 d y +  dLP++++++++lsr++   ++k                         f  ++  P+  +r+  +sA +e+gvL+Ir
  KOO21802.1 410 DAYNIYMDLPGMTRDQVKLSRQNVVTIVKGTresglsdreiatsvtrqerkagEFTMTFRIPEEYQRR-WESADMENGVLRIR 491
                 6799999***************998888888************999766666666666******9999.99***********7 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   0.1   1.1e-06    0.0039       2     111 ..     110     232 ..     109     235 .. 0.58
   2 ?   -1.8   0.0      0.87   3.1e+03      50      60 ..     415     424 ..     403     463 .. 0.67

  Alignments for each domain:
  == domain 1  score: 17.3 bits;  conditional E-value: 1.1e-06
                 EEEEESTTSSHHHHHHHHHTSTEEESSSTTSSSSEEEEEEEETT.EEEEEEECGGCSS..HHHHHHHHHHHHHH.......HHC.TSEEEEEEETT... CS
    MMR_HSR1   2 vaivGrpNvGKStLinaltgekaivsdkpgtTrdinegrvklkg.keielvDtpGlie..gaseekglgkafla.......lee.adlillvvdas... 86 
                 va++G    GK+ ++n ++++k     k+ +T+   +++v+++g ++++l+D  G ++  + s+e ++ ++ +        + e +d +l vv+     
  KOO21802.1 110 VAVLGLYDKGKTFVLNNISNAKLPS-GKKVATKGLSFKHVEVSGgTKFILLDSEGSFSpvKVSNELSVVEKEATelflqelIFEmSDYFLCVVNDFtsl 207
                 89******************86655.5566788888888887777**********75333222333222222211222232223479988888733444 PP

                 .TTCSHHHHHHHHHHHHHTTSEEEEE CS
    MMR_HSR1  87 .eeklkpldeeleelleeakkplilv 111
                  ++ l++l ++l++ + ++ +++i+v
  KOO21802.1 208 dQRYLDKLTRNLQNSK-KDFREVIVV 232
                 3333333334443332.233335555 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 0.87
                 EEECGGCSSHH CS
    MMR_HSR1  50 lvDtpGliega 60 
                  +D+pG+   +
  KOO21802.1 415 YMDLPGMTR-D 424
                 568888432.1 PP

>> GBP  Guanylate-binding protein, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.0   2.1e-06    0.0077      22      87 ..     108     167 ..     106     177 .. 0.80
   2 ?    2.1   0.4     0.026        94     142     196 ..     176     229 ..     166     243 .. 0.73

  Alignments for each domain:
  == domain 1  score: 15.5 bits;  conditional E-value: 2.1e-06
                 EEEEEEEBTTSSHHHHHHHHHTBSSSSESSSCSSST-SSEEEESCE-SSSTCEEEEEEEEECBTTT CS
         GBP  22 vvvaivGlyRkGksfLlnklarkkkGFslrstvesetkGiliWcephpkkekvalvLlDteGlgDv 87 
                 ++va+ Gly kGk f+ln++ +      l s+ +  tkG+    +    ++    +LlD eG +  
  KOO21802.1 108 AIVAVLGLYDKGKTFVLNNISNA----KLPSGKKVATKGLSFKHVEVSGGT--KFILLDSEGSFSP 167
                 58*****************9876....488999999999987666555554..4689999998865 PP

  == domain 2  score: 2.1 bits;  conditional E-value: 0.026
                 HCCHHCSSTTCEEEEEEEECESSTTTSTSCHHHHHHHHHHHTCCHCSSSHHHHHH CS
         GBP 142 vadeeefvkfFpslvflvRDfsleleaegklltedeyLekrLklkkgqdeklqka 196
                 v ++e +  f ++l+f + D+ l    ++ +l +++yL+k  +  ++++++ +++
  KOO21802.1 176 VVEKEATELFLQELIFEMSDYFLCVVNDFTSL-DQRYLDKLTRNLQNSKKDFREV 229
                 44556667788**********99998888765.6889998777777777666654 PP

>> Dynamin_N  Dynamin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.3   0.1   0.00031       1.1       1      33 [.     110     141 ..     110     144 .. 0.94
   2 !    5.2   0.0    0.0056        20     121     164 ..     185     232 ..     157     235 .. 0.82
   3 ?   -1.3   0.0      0.55     2e+03     106     118 ..     416     428 ..     406     455 .. 0.80

  Alignments for each domain:
  == domain 1  score: 9.3 bits;  conditional E-value: 0.00031
                 EEEEEBTTTTHHHHHHHHHTS--S---SSS--- CS
   Dynamin_N   1 iavvGsqSsGKSSvlnaLlgedilprgpnptTr 33 
                 +av+G + +GK+ vln++  ++ lp+g+ + T 
  KOO21802.1 110 VAVLGLYDKGKTFVLNNISNAK-LPSGKKVATK 141
                 79********************.*****99995 PP

  == domain 2  score: 5.2 bits;  conditional E-value: 0.0056
                 HHHHHH.STTEEEEEEEETTS-CCC-CHHHHHHHHSTTBTT...EEEE CS
   Dynamin_N 121 lvkeyi.kkadiilavtsanhdlsnsealflarevdpkgkr...tivv 164
                  ++e+i + +d +l+v++  ++l +   ++l r++++ +k    +ivv
  KOO21802.1 185 FLQELIfEMSDYFLCVVNDFTSLDQRYLDKLTRNLQNSKKDfreVIVV 232
                 5678899**************************999988875655655 PP

  == domain 3  score: -1.3 bits;  conditional E-value: 0.55
                 EE---B-SSSGTT CS
   Dynamin_N 106 vDlPGldsvnkrd 118
                 +DlPG+++ +++ 
  KOO21802.1 416 MDLPGMTRDQVKL 428
                 79****9977764 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (509 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       633  (0.0353059); expected 358.6 (0.02)
Passed bias filter:                      541  (0.0301746); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.57u 0.28s 00:00:00.85 Elapsed: 00:00:00.46
# Mc/sec: 3351.90
//
Query:       KOO21803.1  [L=393]
Description: heat shock protein 22a [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.3e-13   51.0   0.1    2.3e-13   50.2   0.1    1.4  1  HSP20       Hsp20/alpha crystallin family
    0.00049   19.6   0.0     0.0019   17.7   0.0    2.0  1  ArsA_HSP20  HSP20-like domain found in ArsA
     0.0025   17.1   0.0     0.0043   16.4   0.0    1.4  1  GBP         Guanylate-binding protein, N-terminal domain
  ------ inclusion threshold ------
      0.023   14.8   0.0      0.089   12.9   0.0    2.0  2  MMR_HSR1    50S ribosome-binding GTPase
       0.15   12.1   0.1       0.76    9.8   0.1    2.0  2  Dynamin_N   Dynamin family


Domain annotation for each model (and alignments):
>> HSP20  Hsp20/alpha crystallin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.2   0.1   6.4e-17   2.3e-13       1      93 [.     288     384 ..     288     392 .. 0.94

  Alignments for each domain:
  == domain 1  score: 50.2 bits;  conditional E-value: 6.4e-17
                 E--SSEEEEEEEEE-TT--CCCEEEEEETTEEEEEEE--......---TT----SS---EEEEEE--STTB-TTT-EEEEETTEEEEEEEBSS--.. CS
       HSP20   1 dikeeeeefevkldvpglkkeelkvkvednrvlvkgehe....eeeedekglikerssrkFsrkftLPenvdadkvkaslkdGvLtvtvpkkepekk 93 
                 di++e++++++ +d+pg+ ++ +k++ ++ + +vkg++e    ++e    + ++er++++F+++f++Pe++     +a++++GvL++   k e+e++
  KOO21803.1 288 DIVREPDAYNIYMDLPGMTRDQVKLSRQNVVTIVKGTREsglsDREIATSVTRQERKAGEFTMTFRIPEEYQRRWESADMENGVLRIRYLKDEEEEE 384
                 6899***********************************99998999999***************************************99999876 PP

>> ArsA_HSP20  HSP20-like domain found in ArsA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.7   0.0   5.3e-07    0.0019       2      62 ..     294     375 ..     293     376 .. 0.89

  Alignments for each domain:
  == domain 1  score: 17.7 bits;  conditional E-value: 5.3e-07
  ArsA_HSP20   2 deyvlkldLPfvdkeeidlsrsgdeLtIkig......................nfrRqitLPsvlarkevtsAkfedgvLeIr 62 
                 d y +  dLP++++++++lsr++   ++k                         f  ++  P+  +r+  +sA +e+gvL+Ir
  KOO21803.1 294 DAYNIYMDLPGMTRDQVKLSRQNVVTIVKGTresglsdreiatsvtrqerkagEFTMTFRIPEEYQRR-WESADMENGVLRIR 375
                 6799999***************998888888************999766666666666******9999.99***********7 PP

>> GBP  Guanylate-binding protein, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   0.0   1.2e-06    0.0043      22      87 ..     108     167 ..     104     198 .. 0.84

  Alignments for each domain:
  == domain 1  score: 16.4 bits;  conditional E-value: 1.2e-06
                 EEEEEEEBTTSSHHHHHHHHHTBSSSSESSSCSSST-SSEEEESCE-SSSTCEEEEEEEEECBTTT CS
         GBP  22 vvvaivGlyRkGksfLlnklarkkkGFslrstvesetkGiliWcephpkkekvalvLlDteGlgDv 87 
                 ++va+ Gly kGk f+ln++ +      l s+ +  tkG+    +    ++    +LlD eG +  
  KOO21803.1 108 AIVAVLGLYDKGKTFVLNNISNA----KLPSGKKVATKGLSFKHVEVSGGT--KFILLDSEGSFSP 167
                 58*****************9876....488999999999987666555554..4689999999875 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   2.5e-05     0.089       2      64 ..     110     174 ..     109     233 .. 0.75
   2 ?   -1.2   0.0      0.57   2.1e+03      50      60 ..     299     308 ..     286     353 .. 0.67

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 2.5e-05
                 EEEEESTTSSHHHHHHHHHTSTEEESSSTTSSSSEEEEEEEETT.EEEEEEECGGCSS..HHHHHH CS
    MMR_HSR1   2 vaivGrpNvGKStLinaltgekaivsdkpgtTrdinegrvklkg.keielvDtpGlie..gaseek 64 
                 va++G    GK+ ++n ++++k     k+ +T+   +++v+++g ++++l+D  G ++  + s+e 
  KOO21803.1 110 VAVLGLYDKGKTFVLNNISNAKLPS-GKKVATKGLSFKHVEVSGgTKFILLDSEGSFSpvKVSNEL 174
                 89******************86655.5566788888888887777**********75422222222 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 0.57
                 EEECGGCSSHH CS
    MMR_HSR1  50 lvDtpGliega 60 
                  +D+pG+   +
  KOO21803.1 299 YMDLPGMTR-D 308
                 578888422.1 PP

>> Dynamin_N  Dynamin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   0.1   0.00021      0.76       1      33 [.     110     141 ..     110     147 .. 0.95
   2 ?   -0.8   0.0      0.38   1.4e+03     106     118 ..     300     312 ..     290     342 .. 0.79

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.00021
                 EEEEEBTTTTHHHHHHHHHTS--S---SSS--- CS
   Dynamin_N   1 iavvGsqSsGKSSvlnaLlgedilprgpnptTr 33 
                 +av+G + +GK+ vln++  ++ lp+g+ + T 
  KOO21803.1 110 VAVLGLYDKGKTFVLNNISNAK-LPSGKKVATK 141
                 79********************.*****99996 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 0.38
                 EE---B-SSSGTT CS
   Dynamin_N 106 vDlPGldsvnkrd 118
                 +DlPG+++ +++ 
  KOO21803.1 300 MDLPGMTRDQVKL 312
                 79***99977765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (393 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       513  (0.0286129); expected 358.6 (0.02)
Passed bias filter:                      459  (0.025601); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.50u 0.23s 00:00:00.73 Elapsed: 00:00:00.40
# Mc/sec: 2946.61
//
Query:       KOO21804.1  [L=816]
Description: hypothetical protein Ctob_004243 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
  ------ inclusion threshold ------
      0.011   16.2   0.0      0.026   14.9   0.0    1.6  1  SET              SET domain
       0.15   12.0   0.0        0.3   11.1   0.0    1.4  1  Methyltransf_21  Methyltransferase FkbM domain


Domain annotation for each model (and alignments):
>> SET  SET domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.9   0.0   2.9e-06     0.026      36     169 .]      74     264 ..      28     264 .. 0.66

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 2.9e-06
                 H...........HTEEEEEXGGXX....GGSX.HHHHHHHTTSSHHHHHHHHHHHHHHHHHHTHHHHHHHXTTTS.......X.............XXH CS
                 x...........xxxxxxxxxxxx....xxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.......x.............xxx RF
         SET  36 e...........aylfslpeapkn....laft.kelakasastllqklakdqkqaekedtdaalkasskaesdln.......a.............skp 98 
                             +y+++l+ + +n     ++t +e+  +s++  +q + +  ++ae+  + a   +s               +             +  
  KOO21804.1  74 AkealcsdgafkPYIDTLDLTVANpdyvQFWTeEEVDLLSGTAAYQIALDVRAEAEDVVRFALSLDSL------RrcvhqdlSargvpmdaavveeRIA 166
                 04445556667789999998866667877777777777777777777777666666654444433333......1222222213333334554444333 PP

                 CCCCCHCCCHEEEETEEEEEECCC...GTTGGGCEEXSSSSEEEEEEEE.........................TTSSEEEEEESSXBXTTEEEEEXTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxx.........................xxxxxxxxxxxxxxxxxxxxxxxxx RF
         SET  99 eagafsaiagysidaralksgnga...gplarflNHsCdpNcnltvqnv.........................lrgprvavfAtrdIkkGeEltidYg 169
                 ++  + a+a     ++++ s+ ga   +pl++ l H   p ++++++                           l++p+++ +++r +++GeEl++ Yg
  KOO21804.1 167 TCVRR-AHAAVLSRSFDDLSDFGAremIPLLDVLQHGKPPSVQHRTKGSvdfeqpvdwtewadedgrdeweeaaLSEPCLVARTRRSVAAGEELLNFYG 264
                 33333.2222222233333333336779********9777775555555788888899999999999999999*************************8 PP

>> Methyltransf_21  Methyltransferase FkbM domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   3.4e-05       0.3      70     172 ..     652     780 ..     579     781 .. 0.70

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 3.4e-05
  Methyltransf_21  70 yfpfavgdtngfstssvlggedaryievpvvtl............................dsf.leei..kksridllkiDvEGaElevLeG. 131
                      y+p+av  ++ +     + +  a+ +e++++++                              + l e   + +++d+l +D++ +E+   ++ 
       KOO21804.1 652 YAPWAVRAMTAARILGRSRSWFAVVVEPEALHVawlrqhfamngfgpdtyrviqapfdrapRGVtLNETlrGLEHVDFLDMDAQRGEMFLVQSa 745
                      66666666666666655556667777777777777777777777777777777776655441233333335779*****************999 PP

  Methyltransf_21 132 .aqkglkrcqpnlivvEvhkfkefetelfdeirqflrecgyr 172
                       ++++l+r++     +E h  +       ++++ +l+++g+ 
       KOO21804.1 746 aDSDALRRVRRVH--IEGHADH-----ISEHVVSTLERHGFN 780
                      8999999977777..5988876.....568999999999996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (816 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       425  (0.0237046); expected 358.6 (0.02)
Passed bias filter:                      343  (0.019131); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.62u 0.25s 00:00:00.87 Elapsed: 00:00:00.40
# Mc/sec: 6050.15
//
Query:       KOO21805.1  [L=803]
Description: hypothetical protein Ctob_004244 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
  ------ inclusion threshold ------
       0.15   11.9   9.8       0.56   10.0   9.8    2.0  1  Gly-zipper_OmpA  Glycine-zipper domain


Domain annotation for each model (and alignments):
>> Gly-zipper_OmpA  Glycine-zipper domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   9.8   3.1e-05      0.56       1      22 [.     326     347 ..     326     351 .. 0.87

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 3.1e-05
  Gly-zipper_OmpA   1 vegAavGAalGAaaGAavGait 22 
                      +++Aa GAa+GAa+GA+  a+t
       KOO21805.1 326 ATSAASGAATGAATGAVSCAAT 347
                      589**************88876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (803 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       428  (0.0238719); expected 358.6 (0.02)
Passed bias filter:                      288  (0.0160634); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.59u 0.27s 00:00:00.86 Elapsed: 00:00:00.42
# Mc/sec: 5707.26
//
Query:       KOO21806.1  [L=294]
Description: ppgpp synthetase i [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    4.2e-20   72.2   0.0    5.8e-20   71.7   0.0    1.2  1  RelA_SpoT      Region found in RelA / SpoT proteins
  ------ inclusion threshold ------
       0.14   12.9   0.1       0.24   12.2   0.1    1.4  1  Orthopox_C10L  Orthopoxvirus C10L protein


Domain annotation for each model (and alignments):
>> RelA_SpoT  Region found in RelA / SpoT proteins
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   71.7   0.0   6.4e-24   5.8e-20       2     115 ..     134     242 ..     133     244 .. 0.88

  Alignments for each domain:
  == domain 1  score: 71.7 bits;  conditional E-value: 6.4e-24
                 EE--HHHHHHHHHHCT--CCCCCCCSSTSEEEEEEE..SSHHHHHHHHHHHHT-SSSE.EEEEEETSTSHCTTCCSEEEEEEEETTEEEEEEEEEEEEE CS
   RelA_SpoT   2 RvKslysiieKlerkgikveekfeeitDligiRviv..efkddvyevlelikklwdvk.pkrfkdyiaepkengYrslHtvvssekgeekvlvEiQiRt 97 
                 R K l+s+++K++ ++       ++++D++++Rv+v  e+  dvye+l +i++l+  + ++rfkdy+++pk+ngY+ lH ++     ++++l+EiQ+Rt
  KOO21806.1 134 RSKGLWSTFHKATVRQ-------KTVHDVLAVRVVVrgEDAADVYEALAAIRHLYPSVgEGRFKDYVRRPKPNGYQGLHDTL---RLPNGQLFEIQVRT 222
                 7777777777777666.......68***********6666889********9988655166*********************...99************ PP

                 HHHHHHHH..HHHHHHHHCT CS
   RelA_SpoT  98 iamdawae..iehhlrYkek 115
                  +m++ a    ++h +Yk++
  KOO21806.1 223 ERMHEHAMwgGAAHRKYKSG 242
                 ********999*******75 PP

>> Orthopox_C10L  Orthopoxvirus C10L protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.1   2.6e-05      0.24      39      78 ..     229     264 ..     207     273 .. 0.68

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 2.6e-05
  Orthopox_C10L  39 smWGgleakkhvgggsggifGgssgvkgGvkGGvnGGvng 78 
                    +mWGg  ++k+    sg ++ + + + +Gv  Gv  Gv +
     KOO21806.1 229 AMWGGAAHRKYK---SGPMWLS-QRMLSGVASGVASGVAA 264
                    7****8888775...6677843.33333444444444443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (294 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       517  (0.028836); expected 358.6 (0.02)
Passed bias filter:                      389  (0.0216967); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.43u 0.21s 00:00:00.64 Elapsed: 00:00:00.38
# Mc/sec: 2327.23
//
Query:       KOO21807.1  [L=463]
Description: hypothetical protein Ctob_004237 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (463 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       395  (0.0220313); expected 358.6 (0.02)
Passed bias filter:                      280  (0.0156172); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.46u 0.21s 00:00:00.67 Elapsed: 00:00:00.37
# Mc/sec: 3792.86
//
Query:       KOO21808.1  [L=339]
Description: hypothetical protein Ctob_004236 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (339 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       439  (0.0244855); expected 358.6 (0.02)
Passed bias filter:                      382  (0.0213063); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.43u 0.20s 00:00:00.63 Elapsed: 00:00:00.36
# Mc/sec: 2812.56
//
Query:       KOO21809.1  [L=242]
Description: hypothetical protein Ctob_004239 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.4e-17   64.1   0.1    1.7e-17   63.9   0.1    1.1  1  CRAL_TRIO_2  Divergent CRAL/TRIO domain
    7.4e-05   22.5   0.0    9.6e-05   22.2   0.0    1.1  1  CRAL_TRIO    CRAL/TRIO domain


Domain annotation for each model (and alignments):
>> CRAL_TRIO_2  Divergent CRAL/TRIO domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.9   0.1   1.9e-21   1.7e-17       1     130 [.      25     157 ..      25     165 .. 0.91

  Alignments for each domain:
  == domain 1  score: 63.9 bits;  conditional E-value: 1.9e-21
  CRAL_TRIO_2   1 grpVfvfiaafl...lsskadldkllryvlhtladkivgke..yvlVyfhtglssenkpslswlkkvystlprrykknlkklyivhpstfvktllktv 93 
                  grpVf+f +a +    +++a  +kl  yvl+ + d +v+++  y+ + ++++ s+    s  w+ k+ +++p  y+++l  l++vhps  v++l+  +
   KOO21809.1  25 GRPVFMFLPAAIpetEETEAIVEKLTLYVLSLVHDLVVNQQqgYTAIWMCNNHSESRPLSARWFYKMHRCVPYCYHERLAGLCLVHPSVTVRCLI-FL 121
                  8*******88885754455699***********999888889**********9999999************************************.** PP

  CRAL_TRIO_2  94 lsafvsskfrkkveyvsrleeLarkidrtqllkslPe 130
                  ls++++  f++k+ y++rle L   +  + + k++P+
   KOO21809.1 122 LSYLPRVSFWEKLNYCDRLEFLDADVPVALI-KTVPQ 157
                  **********************999999998.77774 PP

>> CRAL_TRIO  CRAL/TRIO domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.2   0.0   1.1e-08   9.6e-05       9     120 ..      16     123 ..       9     150 .. 0.83

  Alignments for each domain:
  == domain 1  score: 22.2 bits;  conditional E-value: 1.1e-08
   CRAL_TRIO   9 vgihgrDkegrpvlylrlgrfdpkklsleelvralvlvlerllkeleedgqvegvtvviDlkglslskmlwkpisllkkilkilqdnyperlgkilivn 107
                 + ++g D++grpv+++ ++ + +++ +++ + +++++vl  + +++ +  q+ g+t ++ ++++s s+ l  + + + k+  ++  +y erl  + +v+
  KOO21809.1  16 FRLTGPDNHGRPVFMFLPAAIPETEETEAIVEKLTLYVLSLVHDLVVN--QQQGYTAIWMCNNHSESRPL--SARWFYKMHRCVPYCYHERLAGLCLVH 110
                 6689***********************99***********88877777..***************33333..388999********************9 PP

   CRAL_TRIO 108 aPklfkfafklvk 120
                 ++  ++ ++ l++
  KOO21809.1 111 PSVTVRCLIFLLS 123
                 9988887766655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (242 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       426  (0.0237604); expected 358.6 (0.02)
Passed bias filter:                      351  (0.0195772); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.42u 0.23s 00:00:00.65 Elapsed: 00:00:00.39
# Mc/sec: 1877.64
//
Query:       KOO21810.1  [L=411]
Description: hypothetical protein Ctob_004238 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (411 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       491  (0.0273858); expected 358.6 (0.02)
Passed bias filter:                      337  (0.0187964); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.47u 0.25s 00:00:00.72 Elapsed: 00:00:00.41
# Mc/sec: 2979.07
//
Query:       KOO21811.1  [L=402]
Description: cmp-sialic acid transporter [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.3e-25   88.9  11.3      5e-25   88.3  11.3    1.2  1  Nuc_sug_transp  Nucleotide-sugar transporter
  ------ inclusion threshold ------
        3.6    7.5   8.2        6.7    6.6   3.5    2.3  2  EOS1            N-glycosylation protein
        4.6    7.4  20.5        1.9    8.7   0.9    2.7  2  EamA            EamA-like transporter family


Domain annotation for each model (and alignments):
>> Nuc_sug_transp  Nucleotide-sugar transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   88.3  11.3   8.3e-29     5e-25       9     314 ..      12     310 ..       6     311 .. 0.90

  Alignments for each domain:
  == domain 1  score: 88.3 bits;  conditional E-value: 8.3e-29
  Nuc_sug_transp   9 slvvlvvqnaslvltlrYartkedkerylsttavllaeilklvvclllllkeekskvkkllrelkkeilakpkdtlklavPsliYtvqnnllyva 103
                     ++++lvv +a+ +l ++  +    k ++  +++v l+e+ kl+++ +l +++  s+ k l + ++ +i+ ++  +      s++Yt+ n l +  
      KOO21811.1  12 AFMTLVVVQAMAILLFKLCQND-GKYTFNPASSVALTEMCKLLLAGSLHYNHVASSKKPLWEGVSPKIVFHYLGL------SMMYTINNQLSFYC 99 
                     567899999999*****99998.899999**************************************99976543......89************ PP

  Nuc_sug_transp 104 lsnLdaatyqvtyqlkilttalfsvllLkrklskkqWlslllLvaGvalvqlkqkeseesekaaaaakeensvlGliavlaacllsgfaGvYfek 198
                     l+  d ++  +   +     al+ + l + +l+  +W+ +++ +  +a+vq++  +++              +  +  + +a  +++f  v+   
      KOO21811.1 100 LQLADPGSMALGKSIAPYLCALL-LRLAGERLHALKWVCIIVQCCAIAIVQYDACKGTGYLP----------MKAYYMIGTATSITAFTSVWNQL 183
                     ***********999988877776.4567899**********************999965554..........344455556777888999***** PP

  Nuc_sug_transp 199 iLkdsnvslWirniqlallsiilalltvllkdgskisekG............ffkGydlvvwvvvllqavGGlvvavvvkyaDnilkgfatslai 281
                     i+k+ +v+  ++n  l+ ++ ++a++  +l+ +s  + +G            ff+Gy+l+  ++vl qa+ Gl va+v  yaD i+k+fa+s  +
      KOO21811.1 184 IIKGFEVPANLQNSFLYAFGSAFAII-SYLHSVSDTHGRGhghghavdgpkgFFEGYTLLASLLVLFQAFHGLAVALVYTYADAIVKNFANSSVM 277
                     ************************99.5777777777777888899999999****************************************999 PP

  Nuc_sug_transp 282 ilstvasvllldlkitllFllGallviaavflY 314
                      +  ++s+l ++l+ tl   lG ++v++ ++ Y
      KOO21811.1 278 AILIIISYLYFGLETTLHSWLGIIIVLTITYCY 310
                     999*************************99999 PP

>> EOS1  N-glycosylation protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.0   0.2     0.015        89      41      87 ..     129     180 ..     122     196 .. 0.80
   2 ?    6.6   3.5    0.0011       6.7      31      84 ..     259     310 ..     239     324 .. 0.90

  Alignments for each domain:
  == domain 1  score: 3.0 bits;  conditional E-value: 0.015
        EOS1  41 Rllslqaiiwplvllllsvlsad.ke....qplaaWivisttltlseivqsw 87 
                 Rl +l+ +++ ++ + ++++++d  +     p++a+ +i+t ++++   + w
  KOO21811.1 129 RLHALKWVCIIVQCCAIAIVQYDaCKgtgyLPMKAYYMIGTATSITAFTSVW 180
                 8999*********999999999952222224789999999988877776666 PP

  == domain 2  score: 6.6 bits;  conditional E-value: 0.0011
        EOS1  31 vyYsilaaliRllslqaiiwplvllllsvlsadkeqplaaWivisttltlseiv 84 
                 + Y+ + a+++ ++ + ++  l+ +   +++ +    l++W+ i  +lt+++  
  KOO21811.1 259 LVYTYADAIVKNFANSSVMAILIIISYLYFGLE--TTLHSWLGIIIVLTITYCY 310
                 57999**************************99..******9999999988865 PP

>> EamA  EamA-like transporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.7   0.9   0.00032       1.9      67     135 ..      80     148 ..      11     150 .. 0.81
   2 ?    3.2  12.7     0.016        94       4     132 ..     164     307 ..     161     311 .. 0.59

  Alignments for each domain:
  == domain 1  score: 8.7 bits;  conditional E-value: 0.00032
        EamA  67 llllgl.lgtvlafllffyalkktsasnaslitslePvftlilsvlllgekltlkqllgivlillGvlli 135
                 + +lgl +  ++ + l fy l+  +++  +l  s++P + ++l  l  ge+l  ++++ i++  ++++++
  KOO21811.1  80 FHYLGLsMMYTINNQLSFYCLQLADPGSMALGKSIAPYLCALLLRLA-GERLHALKWVCIIVQCCAIAIV 148
                 34555545566777899******************************.*************999999876 PP

  == domain 2  score: 3.2 bits;  conditional E-value: 0.016
        EamA   4 illallaalfwaiyfvlskillrkvspltltfvrfl..iagillliiallkegkl...........aklslkdwllllllgllgtvlaf..llffyalk 87 
                 ++++ +a+ + a++ v  + +++ ++  + +  +fl  +++++ +i +l++ +             + ++     + ll +ll  + af  l+     +
  KOO21811.1 164 YYMIGTATSITAFTSVWNQLIIKGFEVPANLQNSFLyaFGSAFAIISYLHSVSDThgrghghghavDGPKGFFEGYTLLASLLVLFQAFhgLAVALVYT 262
                 556666666677777777777777744433333333213344433333333333332333434444444444455555555555555552255555566 PP

        EamA  88 ktsasnaslitslePvftlilsvlllgekltlkqllgivlillGv 132
                 + +a +  +++s + ++ +i+s+l++g   tl ++lgi+++l  +
  KOO21811.1 263 YADAIVKNFANSSVMAILIIISYLYFGLETTLHSWLGIIIVLTIT 307
                 6677788899999999************************99765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (402 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       771  (0.043003); expected 358.6 (0.02)
Passed bias filter:                      388  (0.0216409); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.48u 0.25s 00:00:00.73 Elapsed: 00:00:00.40
# Mc/sec: 3032.67
//
Query:       KOO21812.1  [L=215]
Description: protein fucoxanthin chlorophyll a c protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    4.5e-37  128.1   0.0    5.6e-37  127.7   0.0    1.1  1  Chloroa_b-bind  Chlorophyll A-B binding protein


Domain annotation for each model (and alignments):
>> Chloroa_b-bind  Chlorophyll A-B binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  127.7   0.0   3.1e-41   5.6e-37       5     161 .]      27     184 ..      23     184 .. 0.88

  Alignments for each domain:
  == domain 1  score: 127.7 bits;  conditional E-value: 3.1e-41
                     XXSXSTTXSX.BXTT-T...T-SBSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSCCCT--.TTTTTTSSS-HHHHHH.HHHHHHHHHHH CS
  Chloroa_b-bind   5 ldgslpgdlg.fDplgls..kdpetlkrlreaEliHGRvAMlavlGalvpelltklsaassfaegpawaeagkvalsvptllalqillligflel 96 
                     l+g  +++ g fDp+g+   k+++++ r+reaEl+HGRv Mla++G+lv+e++  l +     +gpa+++     +++p  l++ ++l+ig++e 
      KOO21812.1  27 LPG-NIAPAGdFDPAGFCagKSKNEVYRFREAELTHGRVGMLAAAGFLVQEFFHPLFS---GDNGPAIEQI----PQLPPPLWFGMTLAIGVCES 113
                     566.4566778*******55566****************************9977543...3578887763....358888999*********** PP

                     HHHHHHHSTTCSS......-SSSSSSSSHCHHSTTSTT.TSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
  Chloroa_b-bind  97 areqelkapeseg......eeekrgypGglgfdplglakkdeeekaelkekEiknGRlAMiaflgfvvqel 161
                      r q+ +a++ eg        ++++ypG+l++dplgl+++d++e++ ++e E+ +GRl M+a++gf++qe+
      KOO21812.1 114 LRIQKGWANPYEGkdisgnLLKEDYYPGDLAWDPLGLKPTDPAEFKLMQERELSHGRLGMLAAAGFIAQEA 184
                     ********999999***9956689*********************************************85 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (215 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       186  (0.0103743); expected 358.6 (0.02)
Passed bias filter:                      168  (0.00937029); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.22s 00:00:00.59 Elapsed: 00:00:00.36
# Mc/sec: 1794.43
//
Query:       KOO21813.1  [L=771]
Description: hypothetical protein Ctob_004869 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (771 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2560  (0.142785); expected 358.6 (0.02)
Passed bias filter:                      435  (0.0242624); expected 358.6 (0.02)
Passed Vit filter:                       116  (0.00646996); expected 17.9 (0.001)
Passed Fwd filter:                        54  (0.00301188); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 1.99u 0.36s 00:00:02.35 Elapsed: 00:00:00.62
# Mc/sec: 3750.61
//
Query:       KOO21814.1  [L=54]
Description: hypothetical protein Ctob_004873 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
  ------ inclusion threshold ------
       0.35   10.4   3.5       0.38   10.2   3.5    1.0  1  Ustilago_mating  Ustilago B locus mating-type protein


Domain annotation for each model (and alignments):
>> Ustilago_mating  Ustilago B locus mating-type protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   3.5   2.1e-05      0.38     122     168 ..       6      52 ..       3      54 .] 0.93

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 2.1e-05
  Ustilago_mating 122 kskkakqrasktpsidstsklestpelsacstadnsfssfgsslsls 168
                      +s++a+ ra      ds s     p  sa ++a + +s+ +s  +l 
       KOO21814.1   6 RSQTAQSRARSVTCSDSCSSHAYLPGKSASTAARKPWSTVCSCVTLC 52 
                      789******999999***************************99886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (54 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       424  (0.0236488); expected 358.6 (0.02)
Passed bias filter:                      143  (0.0079759); expected 358.6 (0.02)
Passed Vit filter:                        10  (0.000557756); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.32u 0.24s 00:00:00.56 Elapsed: 00:00:00.39
# Mc/sec: 413.75
//
Query:       KOO21815.1  [L=665]
Description: multiple c2 and transmembrane domain-containing protein 1 isoform 2 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.9e-15   56.4   0.0    5.8e-15   55.4   0.0    1.5  1  C2        C2 domain


Domain annotation for each model (and alignments):
>> C2  C2 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.4   0.0   3.2e-19   5.8e-15       1      92 [.     506     602 ..     506     611 .. 0.93

  Alignments for each domain:
  == domain 1  score: 55.4 bits;  conditional E-value: 3.2e-19
                 TEEEEEEEEEESSSSSSTTSSCEEEEEEEEECEEEEEE-SCSSSSSSEEEEEEEEEESC....HTTSEEEEEEEEECS..SSTEEEEEEEEEEGHHHH CS
          C2   1 gklevtvieAknLpnkdkkgssdpyvkvsldgkqkakTrviknslnPvWnekftfevae....leeakLeveVfdndr..lskddfiGkveiplstll 92 
                 g l+v+  +A +L+  d +g sdpy+ + + + + +kT+  +++l P Wne+++f+v++      +a ++v+V+d+d+  l kdd +Gk+++ ls l+
  KOO21815.1 506 GVLRVHFERASGLKSTDTNGLSDPYAMAVI-KRVHVKTKALPKTLAPAWNEMLQFKVTPqlqaVVDANMTVSVMDKDTgmLDKDDEVGKCTVALSALA 602
                 5799**************************.********99******************99988999**********98679***********99855 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (665 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       539  (0.030063); expected 358.6 (0.02)
Passed bias filter:                      446  (0.0248759); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.57u 0.25s 00:00:00.82 Elapsed: 00:00:00.40
# Mc/sec: 5018.06
//
Query:       KOO21816.1  [L=1650]
Description: pre-mRNA-splicing factor rse1 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
   1.8e-152  508.4   0.0   2.6e-152  507.9   0.0    1.2  1  MMS1_N         Mono-functional DNA-alkylating methyl methanes
    1.3e-85  287.6   0.0    8.6e-85  284.9   0.0    2.1  2  CPSF_A         CPSF A subunit region
    1.4e-10   40.0   1.1     0.0041   16.6   0.2    3.7  3  EF-hand_1      EF hand
      2e-09   36.6   1.7     0.0016   18.2   0.1    4.0  3  EF-hand_6      EF-hand domain
    1.4e-07   31.8   1.8    1.4e-05   25.5   0.3    2.8  2  EF-hand_7      EF-hand domain pair
    5.8e-05   22.4   3.4      0.028   13.9   0.2    3.2  3  EF-hand_5      EF hand
     0.0025   17.6   6.1     0.0053   16.6   1.9    3.2  3  EF-hand_8      EF-hand domain pair


Domain annotation for each model (and alignments):
>> MMS1_N  Mono-functional DNA-alkylating methyl methanesulfonate N-term
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  507.9   0.0    1e-155  2.6e-152       1     489 []      75     587 ..      75     587 .. 0.97

  Alignments for each domain:
  == domain 1  score: 507.9 bits;  conditional E-value: 1e-155
      MMS1_N   1 DlLvvgsdsgelvflsynpeknqfetvhshetlgksgsrrsqpGqylavDPkgraiavsayekvflvyslkkkeilnr..ealll.ssplearksegvi 96 
                 D++v+gsdsg++v+l+y+ +k+ f++vh  et+gk+g+rr++pGqy+avDP+gra++++a+ek++lvy      ilnr  +a+l+ ssplea+ks +v+
  KOO21816.1  75 DYIVIGSDSGKIVILEYSADKQCFDRVH-AETYGKTGVRRIVPGQYVAVDPRGRAVMIGAVEKQKLVY------ILNRdsAARLTiSSPLEAHKSATVC 166
                 9***************************.***************************************......999999999999************* PP

      MMS1_N  97 lsmvFldpgykeednpiialleqdrrg............kteltlyewdlglnlvrkisktsepkknldsganlLiplpk....pggvlVcgetiityk 179
                 +++ ++d+g+ +  npi+a+le+d+++            ++ l++ye+dlgln+v++  k+s+    +d++an L+++p+    pggv+Vc+e++++yk
  KOO21816.1 167 FDLIGVDVGF-D--NPIFAALEVDTEEvenepdtrevlyEKLLVYYELDLGLNHVVR--KWSDA---VDPTANKLVAVPGgadgPGGVIVCSENFVVYK 257
                 **********.5..9*******8888888889999**********************..***99...*************99999************** PP

      MMS1_N 180 dildqedirkkswarPrrekatn.....fv..aweklds.fffllatedGdLylleiekdedsgkvvtsislkyfdtvsvasalvilksgfLfvasefG 270
                     q++ r+   a+Prr++        ++  a++++++ +f+l+++e GdLy+l+++  e+  + v +++++y+d v+++ al+ilksgfLf+a+ef 
  KOO21816.1 258 SP-TQPERRC---ALPRRKDLPTahgllIIaaAVHRQRDhYFILVQSECGDLYKLTLTV-EG--ELVAELRCRYLDSVPPCVALCILKSGFLFCAAEFA 349
                 **.7788999...*****9888899997447888888888*****************44.44..79********************************* PP

      MMS1_N 271 dgqlyqieargedd.........................knleliqtldNlaPilDfkvvkesdlasegqdqiytcsGagkrgsLrelRsGieveelav 344
                 ++ +yq++ +gedd                         +nl  ++++++l+Pi+D+k v   d +++g++ i +++G+g+r++Lr l++G+ v+e+av
  KOO21816.1 350 NHSFYQFQGIGEDDdsptcsskqfeaedfavvplvprplRNLLHVDDMESLCPIVDAKLV---DPTKSGTPSIAALCGRGPRSTLRLLQHGLAVSEMAV 445
                 ************99**********************************************...************************************ PP

      MMS1_N 345 seepgspitgvWtlklssedeyddylvlSfvneTlvlsidgdgeveevtedsglllsvpTLaagnlgdgslvQVtpngirliradkrvsewkppngksi 443
                 se+pg+p ++vWt+k++++d yd y+v+Sfvn+Tlvlsi g+ +veevt dsgl  ++pTL++g +gd++++QV+p gir++r+d rv+ew+pp+gk i
  KOO21816.1 446 SELPGNP-NAVWTVKKRRDDPYDRYIVVSFVNATLVLSI-GE-TVEEVT-DSGLKADTPTLFVGLVGDDAMMQVHPAGIRHVRSDGRVNEWRPPKGKPI 540
                 *******.*******************************.*9.******.************************************************* PP

      MMS1_N 444 iaaaangeqllvalsgrelvyfeld...lieevekkdleslsevsclsl 489
                 i+a+an++q++++lsg+e++yfeld    + e++kkd++  +ev+cl++
  KOO21816.1 541 INATANHKQVVLSLSGGEVIYFELDaagTLAEMDKKDMG--HEVACLEI 587
                 ************************88899999*******..******86 PP

>> CPSF_A  CPSF A subunit region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.0   0.0      0.17   4.3e+02      67     119 ..      36      94 ..      15     108 .. 0.66
   2 !  284.9   0.0   3.4e-88   8.6e-85       1     321 [.     847    1169 ..     847    1170 .. 0.96

  Alignments for each domain:
  == domain 1  score: -0.0 bits;  conditional E-value: 0.17
                 EEEEEEE-SS--EEEEEEEEEEEES----EEEE......TTEEEEE-.SSEEEEEEE-TT CS
      CPSF_A  67 lvfeiievpetnrkLklvhkeevkgavtalaef......qGrllvgv.gqkvrvydlged 119
                  v+e+i  p+   k + vh +ev g++++la +      ++++++g  + k+++ ++  d
  KOO21816.1  36 KVLELIR-PDDHGKVQTVHATEVFGIIRSLATCrltggnRDYIVIGSdSGKIVILEYSAD 94 
                 5666666.6667777778888888777777766555555555555552335555555555 PP

  == domain 2  score: 284.9 bits;  conditional E-value: 3.4e-88
                  B-EEEEE-T..TT-EEEEE--TTEEEEEEEE--B-SSTTT---B--EEEEEEE---SSS--E..EEEEEEEEEE-SS--EEEEEEEEEEEES----E CS
      CPSF_A    1 assiklvdpiskeeidsleLeenEavlsvksvelessettkekkellvVGtafnlgedpaars.GrilvfeiievpetnrkLklvhkeevkgavtal 96  
                  as+i+lvdp++ ++++ leL +nEa+ls+++v + +  +    +++++VGt  +++  p++ +   i+v+++ e    n kL+lvhk++v++ + al
  KOO21816.1  847 ASCIRLVDPVTRQTLSVLELGDNEAALSLAMVPVRDRAG----ETFVMVGTVRDMTLHPRQLTaAFIHVYQFAEG---NTKLELVHKTQVEDVPKAL 936 
                  69********************************97654....9***************66669**********4...89***************** PP

                  EEETTEEEEE-SSEEEEEEE-TTS-EEEEEEEE-SS..-EEEEEEE.TTEEEEEESSS-EEEEEE-S.SS--EEEEEEESS---EEEEEEE--SSSE CS
      CPSF_A   97 aefqGrllvgvgqkvrvydlgedktLlrkafldtql..yvvslkvl.gnriivgDlmkSvtfveyde.enyklilfardtqkrwvtaaeflvdgedt 189 
                  a f Grll+gvg+ +r+yd+g++k Llrk+++ ++l  +v s++v+  +r++vgDl +S+++++y++ en+ ++lfa+d+ +rw ta ++l d+ +t
  KOO21816.1  937 AAFGGRLLAGVGSRLRLYDMGKKK-LLRKSEF-KGLptMVQSIHVIsPSRVYVGDLAESFHYIKYQRqENN-FVLFADDVAPRWLTASTVL-DA-NT 1028
                  ************************.****999.7777799999999446******************7777.*******************.99.9* PP

                  EEEEETTSEEEEEE--TTSGGGTTTT...................EEEEEEEEE-SS----E...EEEE.SSS--S-EEEEEE-TTS-EEEEEE.-- CS
      CPSF_A  190 vlvaDkfgnlfvlrydpeasessdgdp..................rleeraefhlgeivtslrkgslvpgeaesssspqllyatldGsigllvPlis 268 
                  +++aDkfgnlfv r+++e+s+++d+ +                  + +e  +fh+ge++tsl+k sl pg +e+     lly+t++G++g+l+Pl s
  KOO21816.1 1029 LAGADKFGNLFVTRLPQEVSDDVDDAQllssaassetlalngapsKSDEVVQFHVGETTTSLQKASLGPGCTEV-----LLYTTIMGGVGALLPLTS 1120
                  *********************************************************************99999.....****************** PP

                  HHHHHHHHHHHHHHHHHS--SSS--HHHHS---..----.---EEHHHHHHHH CS
      CPSF_A  269 eeeyrrlqaLqqqLrkelkhlgGldhrafRsyyspkseevkgviDgdllerfl 321 
                  +++ +++qaL+++Lr+e ++l G+dh+ fRs+y p    +kgv+Dgd+++ f+
  KOO21816.1 1121 KDDLELMQALEMHLRQEAPPLSGRDHLLFRSAYFP----AKGVVDGDFCQLFT 1169
                  ***********************************....**********9997 PP

>> EF-hand_1  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.3   0.0   8.6e-06     0.022       4      23 ..    1246    1265 ..    1244    1269 .. 0.94
   2 !   16.6   0.2   1.6e-06    0.0041       1      26 [.    1284    1309 ..    1284    1311 .. 0.92
   3 !    5.4   0.0     0.006        15       4      21 ..    1424    1441 ..    1421    1448 .. 0.88

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 8.6e-06
                  HHHHHHTTTSSSEEEHHHHH CS
   EF-hand_1    4 eiFrefDkDgdGkIdfeEfk 23  
                  +++r+ D+ gdG+I++ Ef+
  KOO21816.1 1246 KMIRDWDTSGDGTINKGEFR 1265
                  8******************8 PP

  == domain 2  score: 16.6 bits;  conditional E-value: 1.6e-06
                  HHHHHHHHHTTTSSSEEEHHHHHHHH CS
   EF-hand_1    1 elkeiFrefDkDgdGkIdfeEfkell 26  
                  e++++F e+D DgdG ++ eE+k +l
  KOO21816.1 1284 EMDQLFGELDNDGDGILTTEELKGWL 1309
                  6899******************9887 PP

  == domain 3  score: 5.4 bits;  conditional E-value: 0.006
                  HHHHHHTTTSSSEEEHHH CS
   EF-hand_1    4 eiFrefDkDgdGkIdfeE 21  
                   +F+++D +g+ ++d+ E
  KOO21816.1 1424 ALFEVLDDNGNQFLDLHE 1441
                  78*************999 PP

>> EF-hand_6  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.3   0.0    0.0019       4.9       9      24 ..    1251    1266 ..    1246    1272 .. 0.89
   2 !   18.2   0.1   6.4e-07    0.0016       1      26 [.    1284    1309 ..    1284    1316 .. 0.91
   3 !    7.7   0.1    0.0015       3.9       3      21 ..    1423    1441 ..    1421    1449 .. 0.88

  Alignments for each domain:
  == domain 1  score: 7.3 bits;  conditional E-value: 0.0019
   EF-hand_6    9 fDkdgdGkidaeElrk 24  
                  +D++gdG+i++ E+r+
  KOO21816.1 1251 WDTSGDGTINKGEFRA 1266
                  7*************96 PP

  == domain 2  score: 18.2 bits;  conditional E-value: 6.4e-07
   EF-hand_6    1 elreaFklfDkdgdGkidaeElrkal 26  
                  e++++F ++D+dgdG +++eEl+ +l
  KOO21816.1 1284 EMDQLFGELDNDGDGILTTEELKGWL 1309
                  6899******************9987 PP

  == domain 3  score: 7.7 bits;  conditional E-value: 0.0015
   EF-hand_6    3 reaFklfDkdgdGkidaeE 21  
                  +++F+ +D +g+ ++d +E
  KOO21816.1 1423 HALFEVLDDNGNQFLDLHE 1441
                  689**************99 PP

>> EF-hand_7  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.5   0.3   5.3e-09   1.4e-05      12      68 ..    1252    1307 ..    1246    1309 .. 0.88
   2 ?    4.6   0.1     0.017        44       3      36 ..    1421    1458 ..    1419    1501 .. 0.69

  Alignments for each domain:
  == domain 1  score: 25.5 bits;  conditional E-value: 5.3e-09
   EF-hand_7   12 DtdgdgyldkeellrllrkifqgagegsklsdeelellfkefDtdkdGvisfdEFlk 68  
                  Dt gdg ++k e++  ++k+  + + +++ls +e+++lf e+D d+dG ++ +E++ 
  KOO21816.1 1252 DTSGDGTINKGEFRAKVKKLMVS-CQMEDLSTQEMDQLFGELDNDGDGILTTEELKG 1307
                  9*************966665444.999999************************875 PP

  == domain 2  score: 4.6 bits;  conditional E-value: 0.017
   EF-hand_7    3 klkeaFkelDtdgdgyldkeellrllrkifqga.....g 36  
                  k +  F+ lD +g+ +ld  e    + + fq++     +
  KOO21816.1 1421 KAHALFEVLDDNGNQFLDLHEAS-THLAAFQKKamdhhR 1458
                  67889***************955.554445544455541 PP

>> EF-hand_5  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.6   0.0    0.0011       2.8       9      23 ..    1252    1266 ..    1245    1269 .. 0.88
   2 !   13.9   0.2   1.1e-05     0.028       2      22 ..    1286    1306 ..    1285    1310 .. 0.88
   3 ?   -1.6   0.0      0.88   2.3e+03       3      12 ..    1424    1433 ..    1423    1434 .. 0.87

  Alignments for each domain:
  == domain 1  score: 7.6 bits;  conditional E-value: 0.0011
                  -SS-SSCE-HHHHHH CS
   EF-hand_5    9 DlNgDGkIskeELkt 23  
                  D+ gDG+I+k E+++
  KOO21816.1 1252 DTSGDGTINKGEFRA 1266
                  999**********96 PP

  == domain 2  score: 13.9 bits;  conditional E-value: 1.1e-05
                  HHHHHHH-SS-SSCE-HHHHH CS
   EF-hand_5    2 kdtFqaiDlNgDGkIskeELk 22  
                  +++F ++D +gDG ++ eELk
  KOO21816.1 1286 DQLFGELDNDGDGILTTEELK 1306
                  569*****************8 PP

  == domain 3  score: -1.6 bits;  conditional E-value: 0.88
                  HHHHHH-SS- CS
   EF-hand_5    3 dtFqaiDlNg 12  
                  ++F+ +D Ng
  KOO21816.1 1424 ALFEVLDDNG 1433
                  58*******9 PP

>> EF-hand_8  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.0   0.0    0.0086        22      31      50 ..    1247    1266 ..    1244    1271 .. 0.86
   2 !   16.6   1.9   2.1e-06    0.0053       2      49 ..    1256    1306 ..    1255    1311 .. 0.81
   3 ?   -0.8   0.1      0.54   1.4e+03      21      39 ..    1412    1433 ..    1382    1441 .. 0.54

  Alignments for each domain:
  == domain 1  score: 5.0 bits;  conditional E-value: 0.0086
   EF-hand_8   31 lfrefDtdgdGkisfeEFcv 50  
                  ++r  Dt gdG+i++ EF +
  KOO21816.1 1247 MIRDWDTSGDGTINKGEFRA 1266
                  78888*************76 PP

  == domain 2  score: 16.6 bits;  conditional E-value: 2.1e-06
   EF-hand_8    2 kgkItreelrrilrilglkk......glseeevdilfrefDtdgdGkisfeEFc 49  
                  +g I + e+r  +++l   +      +ls +e+d lf e+D dgdG+++ eE  
  KOO21816.1 1256 DGTINKGEFRAKVKKL---MvscqmeDLSTQEMDQLFGELDNDGDGILTTEELK 1306
                  7899999999977444...13334567**********************99976 PP

  == domain 3  score: -0.8 bits;  conditional E-value: 0.54
   EF-hand_8   21 k...glseeevdilfrefDtdg 39  
                      g++  ++++lf  +D +g
  KOO21816.1 1412 NlipGVTQAKAHALFEVLDDNG 1433
                  1223455555666666666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1650 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       920  (0.0513135); expected 358.6 (0.02)
Passed bias filter:                      560  (0.0312343); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.95u 0.30s 00:00:01.25 Elapsed: 00:00:00.43
# Mc/sec: 11498.59
//
Query:       KOO21817.1  [L=434]
Description: scp1-like small phosphatase 5 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.3e-52  177.7   0.3    1.7e-52  177.3   0.3    1.2  1  NIF       NLI interacting factor-like phosphatase
    3.6e-19   68.9   0.8    4.9e-07   30.2   0.1    2.8  3  Ank_4     Ankyrin repeats (many copies)
    8.4e-19   68.0   0.0    9.2e-09   35.8   0.1    2.3  2  Ank_2     Ankyrin repeats (3 copies)
    1.2e-17   63.5   2.4    5.2e-07   29.8   0.0    3.8  4  Ank       Ankyrin repeat
    4.4e-15   54.3   0.2    0.00017   21.8   0.0    4.4  4  Ank_3     Ankyrin repeat
    8.8e-14   51.4   0.5    4.8e-05   23.6   0.1    3.7  3  Ank_5     Ankyrin repeats (many copies)


Domain annotation for each model (and alignments):
>> NIF  NLI interacting factor-like phosphatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  177.3   0.3   5.8e-56   1.7e-52       3     156 .]     258     417 ..     256     417 .. 0.94

  Alignments for each domain:
  == domain 1  score: 177.3 bits;  conditional E-value: 5.8e-56
         NIF   3 LVLDLDetLvhskleksk....klkve..gekvevsvlkRpgldefLkelsklyevvifTasseeyaeavidildpekkllshrlyrescvkkkgeyvK 95 
                 LVLDLDetL+hs+  +       ++v+  + +++v+v kRp++d f++++skl+e+++fTas++ ya++ ++i+dp++k ++hr++r+scv  +g+y+K
  KOO21817.1 258 LVLDLDETLLHSSIVPLPtydiVFPVHfnNFNYQVYVRKRPHMDFFMERVSKLFEIIVFTASQKVYADKLLSIIDPQRKWIKHRVFRDSCVLVEGNYLK 356
                 9************744434877445556588899********************************************************978****** PP

         NIF  96 dLsllgrdlsrvvivDdspdsfelqpengipiksffsdkkDneLlkllpllkelakvddvr 156
                 dL++lgrdl +  ivD+sp++f +q +ngipi+s+f+d++D+eLlkllp+l+++a+v+dvr
  KOO21817.1 357 DLQILGRDLTKAAIVDNSPQAFGFQLDNGIPIESWFDDQSDTELLKLLPFLEKMAEVEDVR 417
                 ***********************************************************98 PP

>> Ank_4  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.2   0.0   1.2e-08   3.6e-05       7      55 .]      53     104 ..      48     104 .. 0.80
   2 !   30.2   0.1   1.6e-10   4.9e-07       2      55 .]      85     137 ..      84     137 .. 0.95
   3 !   27.0   0.0   1.7e-09   4.9e-06       3      55 .]     119     170 ..     117     170 .. 0.96

  Alignments for each domain:
  == domain 1  score: 24.2 bits;  conditional E-value: 1.2e-08
       Ank_4   7 yaaisgrlelvrlLlekg.adinaqdnrs...GetalhiAakrgnveilklLl 55 
                 +aa++g+le +r++le++ a +++ d ++   G t+lh+Aa+ g+ +++ lLl
  KOO21817.1  53 SAAQAGDLEKLRRCLERNpAAVYH-DGGNgrtGYTPLHYAARSGSTDCVSLLL 104
                 7899************95255777.6666333556****************98 PP

  == domain 2  score: 30.2 bits;  conditional E-value: 1.6e-10
       Ank_4   2 ltaLhyaaisgrlelvrlLlekgadinaqdnrsGetalhiAakrgnveilklLl 55 
                 +t+Lhyaa sg +++v lLl + a + a+    G t+l +Aa  g+  +  lLl
  KOO21817.1  85 YTPLHYAARSGSTDCVSLLLRSSAPVLAR-TTGGATPLMRAATAGHAAVCTLLL 137
                 79******************99*******.788***************999997 PP

  == domain 3  score: 27.0 bits;  conditional E-value: 1.7e-09
       Ank_4   3 taLhyaaisgrlelvrlLlekgadinaqdnrsGetalhiAakrgnveilklLl 55 
                 t+L +aa +g+  ++ lLl  g +  a  +++Get+lh+Aa   ++e++k Ll
  KOO21817.1 119 TPLMRAATAGHAAVCTLLLRAGSEALAF-DSDGETPLHKAAAAQQPEAFKVLL 170
                 89*****************99*******.**********************97 PP

>> Ank_2  Ankyrin repeats (3 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.0   0.0   4.1e-10   1.2e-06      33      77 ..      54     108 ..      50     114 .. 0.77
   2 !   35.8   0.1   3.1e-12   9.2e-09      26      74 ..     117     171 ..     112     183 .. 0.87

  Alignments for each domain:
  == domain 1  score: 29.0 bits;  conditional E-value: 4.1e-10
       Ank_2  33 AakngnleivklLleh.........ad.ndgrtpLhyAarsghleivklLlekga 77 
                 Aa++g+le ++  le           + ++g+tpLhyAarsg++++v lLl + a
  KOO21817.1  54 AAQAGDLEKLRRCLERnpaavyhdgGNgRTGYTPLHYAARSGSTDCVSLLLRSSA 108
                 888999988999998345455445533789********************96654 PP

  == domain 2  score: 35.8 bits;  conditional E-value: 3.1e-12
       Ank_2  26 gktaLhyAakngnleivklLleh......adndgrtpLhyAarsghleivklLle 74 
                 g t+L+ Aa +g+  ++ lLl +      +d+dg+tpLh Aa  +++e++k+Ll+
  KOO21817.1 117 GATPLMRAATAGHAAVCTLLLRAgsealaFDSDGETPLHKAAAAQQPEAFKVLLK 171
                 78***********999*****8666678888***********99**********4 PP

>> Ank  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.8   0.0   1.7e-10   5.2e-07       2      31 ..      84     114 ..      83     115 .. 0.90
   2 !   18.7   0.2   5.8e-07    0.0017       2      24 ..     117     140 ..     116     147 .. 0.87
   3 !   12.7   0.0   4.5e-05      0.13       1      29 [.     149     176 ..     149     178 .. 0.86
   4 ?   -3.0   0.0       4.2   1.2e+04       4      12 ..     265     277 ..     264     280 .. 0.64

  Alignments for each domain:
  == domain 1  score: 29.8 bits;  conditional E-value: 1.7e-10
                 SBBHHHHHHHHTTHHHHHHHH.TTTSTTCBT CS
         Ank   2 GnTPLHlAatngkkriiklLL.hGAnlnald 31 
                 G+TPLH+Aa+ g++++++lLL ++A + a++
  KOO21817.1  84 GYTPLHYAARSGSTDCVSLLLrSSAPVLART 114
                 9********************7789888776 PP

  == domain 2  score: 18.7 bits;  conditional E-value: 5.8e-07
                 SBBHHHHHHHHTTHHHHHHHH.TT CS
         Ank   2 GnTPLHlAatngkkriiklLL.hG 24 
                 G TPL++Aat g++ ++ lLL  G
  KOO21817.1 117 GATPLMRAATAGHAAVCTLLLrAG 140
                 78*******************656 PP

  == domain 3  score: 12.7 bits;  conditional E-value: 4.5e-05
                 TSBBHHHHHHHHTTHHHHHHHHTTTSTTC CS
         Ank   1 dGnTPLHlAatngkkriiklLLhGAnlna 29 
                 dG TPLH Aa   +++  k LL  A+++a
  KOO21817.1 149 DGETPLHKAAAAQQPEAFKVLL-KACPDA 176
                 8******777577799******.999987 PP

  == domain 4  score: -3.0 bits;  conditional E-value: 4.2
                 BHHHHHH....HH CS
         Ank   4 TPLHlAa....tn 12 
                 T LH  +    t+
  KOO21817.1 265 TLLHSSIvplpTY 277
                 8999865555555 PP

>> Ank_3  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.5   0.0         1     3e+03       9      30 ..      54      75 ..      53      76 .. 0.83
   2 !   21.8   0.0   5.7e-08   0.00017       2      28 ..      84     109 ..      83     112 .. 0.88
   3 !   11.7   0.0   0.00011      0.32       2      25 ..     117     139 ..     116     144 .. 0.88
   4 !   14.9   0.0   9.3e-06     0.028       1      23 [.     149     171 ..     149     177 .. 0.90

  Alignments for each domain:
  == domain 1  score: -0.5 bits;  conditional E-value: 1
       Ank_3  9 AarsgnleivkfLlenkgadvn 30
                Aa +g+le ++ +le + a v+
  KOO21817.1 54 AAQAGDLEKLRRCLERNPAAVY 75
                899999999******7777765 PP

  == domain 2  score: 21.8 bits;  conditional E-value: 5.7e-08
       Ank_3   2 GetpLhlAarsgnleivkfLlenkgad 28 
                 G+tpLh+Aarsg+++ v +Ll+   a+
  KOO21817.1  84 GYTPLHYAARSGSTDCVSLLLR-SSAP 109
                 9********************9.5665 PP

  == domain 3  score: 11.7 bits;  conditional E-value: 0.00011
       Ank_3   2 GetpLhlAarsgnleivkfLlenk 25 
                 G tpL++Aa +g+ +++ +Ll+  
  KOO21817.1 117 GATPLMRAATAGHAAVCTLLLR-A 139
                 89*************9999998.4 PP

  == domain 4  score: 14.9 bits;  conditional E-value: 9.3e-06
       Ank_3   1 nGetpLhlAarsgnleivkfLle 23 
                 +GetpLh Aa ++ +e  k Ll+
  KOO21817.1 149 DGETPLHKAAAAQQPEAFKVLLK 171
                 69********************9 PP

>> Ank_5  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.6   0.0   1.2e-06    0.0037      14      40 ..      82     106 ..      67     115 .. 0.83
   2 !   23.6   0.1   1.6e-08   4.8e-05       8      53 ..     109     154 ..     105     154 .. 0.92
   3 !   18.8   0.0   5.1e-07    0.0015       1      55 [.     136     190 ..     136     196 .. 0.72

  Alignments for each domain:
  == domain 1  score: 17.6 bits;  conditional E-value: 1.2e-06
       Ank_5  14 gggntpLhvAakygaadvvrlLlarga 40 
                 + g+tpLh+Aa+ g+ d+v lLl  ++
  KOO21817.1  82 RTGYTPLHYAARSGSTDCVSLLL--RS 106
                 6789******************9..44 PP

  == domain 2  score: 23.6 bits;  conditional E-value: 1.6e-08
       Ank_5   8 dvnrldgggntpLhvAakygaadvvrlLlargadlnltdsrGltal 53 
                  v ++  gg tpL+ Aa +g+a v+ lLl  g+ + + ds+G+t+l
  KOO21817.1 109 PVLARTTGGATPLMRAATAGHAAVCTLLLRAGSEALAFDSDGETPL 154
                 5667888999***********************************8 PP

  == domain 3  score: 18.8 bits;  conditional E-value: 5.1e-07
       Ank_5   1 LlehgpadvnrldgggntpLhvAakygaadvvrlLl.argadlnltdsrGltaldl 55 
                 Ll++g     + d +g+tpLh Aa ++ ++ +++Ll a + ++ + + rG+ ++dl
  KOO21817.1 136 LLRAG-SEALAFDSDGETPLHKAAAAQQPEAFKVLLkACPDAAEMLNRRGKRPWDL 190
                 67777.44447788888*******************85555555555555555554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (434 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       364  (0.0203023); expected 358.6 (0.02)
Passed bias filter:                      317  (0.0176809); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.50u 0.22s 00:00:00.72 Elapsed: 00:00:00.40
# Mc/sec: 3245.01
//
Query:       KOO21818.1  [L=492]
Description: microsomal glutathione s-transferase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.2e-12   47.6   0.1      2e-12   46.9   0.1    1.4  1  R3H       R3H domain
    1.4e-06   28.2   0.0    2.9e-06   27.2   0.0    1.5  1  MAPEG     MAPEG family
     0.0039   17.1   0.0       0.13   12.2   0.0    2.5  2  UBA       UBA/TS-N domain
  ------ inclusion threshold ------
       0.14   12.0   0.0       0.31   10.9   0.0    1.5  1  UBA_4     UBA-like domain


Domain annotation for each model (and alignments):
>> R3H  R3H domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.9   0.1   4.5e-16     2e-12       2      58 ..      17      73 ..      16      75 .. 0.95

  Alignments for each domain:
  == domain 1  score: 46.9 bits;  conditional E-value: 4.5e-16
                HHHHHHHHHHHHHH-S--EEE-----SHHHHHHHHHHHHSSEEEEEE--SS-SEEEE CS
         R3H  2 fllrvekklaefvkdtgrslefppmssyeRriiHelaeaygleseSvGeepkRrvvv 58
                ++++v + l  f + + r+ ++p m++++R ++He+a+ay+++++S+++ep R+v +
  KOO21818.1 17 WVRQVDELLSAFCRGDARRESLPAMTKQQRGVVHEMAKAYNISTQSYDNEPRRHVDL 73
                99****************************************************955 PP

>> MAPEG  MAPEG family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.2   0.0   6.5e-10   2.9e-06      19     104 ..     374     454 ..     371     482 .. 0.79

  Alignments for each domain:
  == domain 1  score: 27.2 bits;  conditional E-value: 6.5e-10
                 HHHHHHHTT--SS---S......SH....HHHHHHHHHHHHHHHHHHHHHHHHHHHHH.T-HHHHHHHHHHHHHHHHHHHHHHHH- CS
       MAPEG  19 vvkerrkakiaigegkanapralddklppklqrairahgNflEyvplfllavllaeltgaetglaallaaafvvaRvlhalgyiag 104
                 ++ +r+k+ +++++ +a + +++++   + ++r++r h+N +E +     ++ll +l+  ++++aa+ + +++++  ++++gy + 
  KOO21818.1 374 AAEARKKNDVQYPNLYATPGYHKEA---DAFNRVQRGHQNMFESLSSMQTMSLLGGLK--HPKVAAVGFCLYLAGCYFYMVGYSDM 454
                 567999******9999877444444...69****************************..79*********************655 PP

>> UBA  UBA/TS-N domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.2   0.0   2.9e-05      0.13       9      37 .]     172     200 ..     168     200 .. 0.91
   2 ?    2.1   0.0     0.043   1.9e+02       6      23 ..     305     322 ..     303     324 .. 0.84

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 2.9e-05
                 HHHTTS-HHHHHHHHHHTTTSHHHHHHHH CS
         UBA   9 LveMGFdreevveALratgnNeErAveyL 37 
                   ++GF+++++  AL +tg+ + +A+e L
  KOO21818.1 172 VAALGFTPDQAAFALQSTGGHVAQAIELL 200
                 5689**********************987 PP

  == domain 2  score: 2.1 bits;  conditional E-value: 0.043
                 HHHHHHTTS-HHHHHHHH CS
         UBA   6 iqrLveMGFdreevveAL 23 
                 +++L+++G++  +++ A 
  KOO21818.1 305 VTELQALGYPLLACRTAA 322
                 789*******98888875 PP

>> UBA_4  UBA-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0     7e-05      0.31      11      35 ..     175     199 ..     172     206 .. 0.90

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 7e-05
       UBA_4  11 TGadeekArqlLeannWdLerAisl 35 
                  G+++++A + L+++++++ +Ai+l
  KOO21818.1 175 LGFTPDQAAFALQSTGGHVAQAIEL 199
                 699********************86 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (492 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       494  (0.0275531); expected 358.6 (0.02)
Passed bias filter:                      353  (0.0196888); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.46u 0.29s 00:00:00.75 Elapsed: 00:00:00.41
# Mc/sec: 3587.89
//
Query:       KOO21819.1  [L=151]
Description: hypothetical protein Ctob_007227 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
     0.0054   16.8   0.0      0.015   15.4   0.0    1.6  1  DUF4490   Domain of unknown function (DUF4490)


Domain annotation for each model (and alignments):
>> DUF4490  Domain of unknown function (DUF4490)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.0   8.1e-07     0.015      47     100 ..      89     143 ..      79     146 .. 0.86

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 8.1e-07
     DUF4490  47 keenplYrTsnqeYGsraPtvhelpkkFyprsakFsqe.llkcgmyrnnglntsv 100
                 k+  p Y+Ts+++ G++a    +lp ++y+ +  F+++ ++++++  n+gl ts+
  KOO21819.1  89 KKLLPYYQTSSSDVGKLAIEPTDLPMRWYGIRGGFTSSwVAESKTMTNSGLSTSI 143
                 6778*************99999*************98725678899999999986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (151 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       274  (0.0152825); expected 358.6 (0.02)
Passed bias filter:                      247  (0.0137766); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.26s 00:00:00.62 Elapsed: 00:00:00.40
# Mc/sec: 1134.83
//
Query:       KOO21820.1  [L=584]
Description: hypothetical protein Ctob_007225 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.6e-13   49.5  13.7     0.0069   16.4   0.0    8.4  8  LRR_6     Leucine Rich repeat
    0.00026   21.1   2.4         51    5.0   0.1    6.0  6  LRR_1     Leucine Rich Repeat
    0.00031   21.1   6.6        5.4    7.6   0.2    4.9  4  LRR_4     Leucine Rich repeats (2 copies)
  ------ inclusion threshold ------
      0.031   14.4   0.0       0.12   12.5   0.0    2.0  2  Skp1      Skp1 family, dimerisation domain
       0.18   12.0   0.0       0.31   11.3   0.0    1.4  1  Skp1_POZ  Skp1 family, tetramerisation domain
       0.45   10.3   6.5         25    4.7   0.3    5.0  5  LRR_8     Leucine rich repeat


Domain annotation for each model (and alignments):
>> LRR_6  Leucine Rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.0   0.0      0.42   1.3e+03       7      24 .]     331     348 ..     328     348 .. 0.85
   2 !    6.0   0.1    0.0048        14       5      24 .]     357     376 ..     357     376 .. 0.88
   3 ?    1.2   0.0      0.17   5.1e+02       5      12 ..     385     392 ..     381     392 .. 0.81
   4 !    6.0   0.1    0.0047        14       5      24 .]     426     445 ..     423     445 .. 0.95
   5 !    7.9   0.0    0.0012       3.6       1      13 [.     450     462 ..     450     467 .. 0.88
   6 !    7.7   0.2    0.0014       4.2       2      15 ..     485     498 ..     484     500 .. 0.88
   7 !   16.4   0.0   2.3e-06    0.0069       5      24 .]     532     551 ..     531     551 .. 0.97
   8 ?    5.0   0.0      0.01        31       3      16 ..     560     573 ..     558     580 .. 0.91

  Alignments for each domain:
  == domain 1  score: -0.0 bits;  conditional E-value: 0.42
       LRR_6   7 eLdLsgNdIgDeGaeaLa 24 
                 eLdL+  +Ig +G++ La
  KOO21820.1 331 ELDLRQRNIGVQGGMLLA 348
                 78888889******9997 PP

  == domain 2  score: 6.0 bits;  conditional E-value: 0.0048
       LRR_6   5 LteLdLsgNdIgDeGaeaLa 24 
                 Lt+L+L+ N++g eG + L+
  KOO21820.1 357 LTKLSLAKNKLGEEGTKFLC 376
                 8*************977665 PP

  == domain 3  score: 1.2 bits;  conditional E-value: 0.17
       LRR_6   5 LteLdLsg 12 
                 L+eLdLsg
  KOO21820.1 385 LKELDLSG 392
                 9*****96 PP

  == domain 4  score: 6.0 bits;  conditional E-value: 0.0047
       LRR_6   5 LteLdLsgNdIgDeGaeaLa 24 
                 Lt+++L+ N++g eG +a++
  KOO21820.1 426 LTKVSLAKNELGEEGTKAIC 445
                 99**************9998 PP

  == domain 5  score: 7.9 bits;  conditional E-value: 0.0012
       LRR_6   1 snthLteLdLsgN 13 
                 +n +L+eLd sgN
  KOO21820.1 450 QNKTLKELDFSGN 462
                 599********** PP

  == domain 6  score: 7.7 bits;  conditional E-value: 0.0014
       LRR_6   2 nthLteLdLsgNdI 15 
                 n+ Lt+ dLsgN++
  KOO21820.1 485 NSVLTSIDLSGNKL 498
                 899*********97 PP

  == domain 7  score: 16.4 bits;  conditional E-value: 2.3e-06
       LRR_6   5 LteLdLsgNdIgDeGaeaLa 24 
                 Lt+L++ gN+IgDeG+ a++
  KOO21820.1 532 LTKLSIYGNHIGDEGVRAIC 551
                 89*****************8 PP

  == domain 8  score: 5.0 bits;  conditional E-value: 0.01
       LRR_6   3 thLteLdLsgNdIg 16 
                 t+L +L+L +N+Ig
  KOO21820.1 560 TKLASLELGFNNIG 573
                 6899*********8 PP

>> LRR_1  Leucine Rich Repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.0       4.3   1.3e+04       2      12 ..     357     367 ..     356     375 .. 0.82
   2 ?    4.4   0.1     0.027        82       2      18 ..     385     402 ..     385     407 .. 0.77
   3 ?    2.7   0.0     0.097   2.9e+02       2      12 ..     454     464 ..     453     472 .. 0.83
   4 ?    5.0   0.1     0.017        51       2      16 ..     488     502 ..     487     508 .. 0.85
   5 ?    1.8   0.0      0.19   5.8e+02       2      21 ..     532     551 ..     531     553 .. 0.87
   6 ?   -0.1   0.1      0.81   2.4e+03       2      15 ..     562     575 ..     561     581 .. 0.68

  Alignments for each domain:
  == domain 1  score: -2.3 bits;  conditional E-value: 4.3
       LRR_1   2 LrhLdLsnnpl 12 
                 L++L L  n l
  KOO21820.1 357 LTKLSLAKNKL 367
                 899***99988 PP

  == domain 2  score: 4.4 bits;  conditional E-value: 0.027
       LRR_1   2 LrhLdLsnnpl.lglppn 18 
                 L++LdLs+ ++ +g+++n
  KOO21820.1 385 LKELDLSGDSFiFGFSSN 402
                 9*****999975555555 PP

  == domain 3  score: 2.7 bits;  conditional E-value: 0.097
       LRR_1   2 LrhLdLsnnpl 12 
                 L++Ld s+n +
  KOO21820.1 454 LKELDFSGNMF 464
                 9********87 PP

  == domain 4  score: 5.0 bits;  conditional E-value: 0.017
       LRR_1   2 LrhLdLsnnpllglp 16 
                 L+++dLs+n l g++
  KOO21820.1 488 LTSIDLSGNKLCGIL 502
                 899*******97765 PP

  == domain 5  score: 1.8 bits;  conditional E-value: 0.19
       LRR_1   2 LrhLdLsnnpllglppnsfq 21 
                 L++L + +n++++ + ++++
  KOO21820.1 532 LTKLSIYGNHIGDEGVRAIC 551
                 899********999888876 PP

  == domain 6  score: -0.1 bits;  conditional E-value: 0.81
       LRR_1   2 LrhLdLsnnpllgl 15 
                 L +L L+ n++++ 
  KOO21820.1 562 LASLELGFNNIGQN 575
                 67888888887543 PP

>> LRR_4  Leucine Rich repeats (2 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.6   0.2    0.0018       5.4       3      35 ..     357     395 ..     356     405 .. 0.77
   2 !    6.5   0.0     0.004        12       3      33 ..     426     462 ..     425     469 .. 0.84
   3 ?    2.1   0.1     0.099     3e+02      25      35 ..     488     497 ..     482     504 .. 0.70
   4 ?    4.4   0.1     0.019        56       3      36 ..     532     572 ..     531     580 .. 0.64

  Alignments for each domain:
  == domain 1  score: 7.6 bits;  conditional E-value: 0.0018
                 --EEE--SS---E-S-....HHH-TT...--EEE-.-S-- CS
       LRR_4   3 LevLdLsnNqltdipl....leklpn...LkeLdLsgNnl 35 
                 L++L+L+ N+l + +        l     LkeLdLsg ++
  KOO21820.1 357 LTKLSLAKNKLGEEGTkflcD-ALVGnniLKELDLSGDSF 395
                 9***********977786421.2444668******99755 PP

  == domain 2  score: 6.5 bits;  conditional E-value: 0.004
                 --EEE--SS---E-S-......HHH-TT--EEE-.-S CS
       LRR_4   3 LevLdLsnNqltdipl......leklpnLkeLdLsgN 33 
                 L++++L+ N l + +       le+++ LkeLd sgN
  KOO21820.1 426 LTKVSLAKNELGEEGTkaiceaLEQNKTLKELDFSGN 462
                 8999999999998777888766668999******999 PP

  == domain 3  score: 2.1 bits;  conditional E-value: 0.099
                 --EEE-.-S-- CS
       LRR_4  25 LkeLdLsgNnl 35 
                 L+++dLsgN +
  KOO21820.1 488 LTSIDLSGN-K 497
                 556666666.2 PP

  == domain 4  score: 4.4 bits;  conditional E-value: 0.019
                 --EEE--SS---E-S-...HH...H-TT..--EEE-.-S--- CS
       LRR_4   3 LevLdLsnNqltdipl...le...klpn..LkeLdLsgNnli 36 
                 L++L++ +N++ d +    +e   +++   L +L L g+n+i
  KOO21820.1 532 LTKLSIYGNHIGDEGVraiCEaiqSNKEtkLASLEL-GFNNI 572
                 999999999999988855422453344455888888.54455 PP

>> Skp1  Skp1 family, dimerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   4.1e-05      0.12       9      36 ..      99     127 ..      94     135 .. 0.85
   2 ?   -2.7   0.0       2.3   6.9e+03       8      15 ..     413     420 ..     411     423 .. 0.87

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 4.1e-05
        Skp1   9 ktvAdmikgktpeeiReiFnIenDft.pE 36 
                 ++ A ++ gk+ +e+Re+++  +Df  +E
  KOO21820.1  99 CALATRLNGKRADELRELLGAMDDFGsAE 127
                 789*****************999997554 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 2.3
        Skp1   8 cktvAdmi 15 
                 +k vA+m+
  KOO21820.1 413 AKHVANML 420
                 799****7 PP

>> Skp1_POZ  Skp1 family, tetramerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0    0.0001      0.31       4      52 ..       9      58 ..       6      62 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.0001
                EEEETTSCEEEEEHHHHTTSHHHHHHHHCTCCCGT.TCEEETTS-HHHHH CS
    Skp1_POZ  4 vLqSsDgesfeveeavakkSktikhmiedlgdddk.priplpnvtskiLe 52
                 L    ge  e  + va++  t+k+m++d  ++d   ++p+   + ++L+
  KOO21820.1  9 RLRAREGEAVEWTRRVAQRAGTLKDMMDDAPTEDGvYPVPIAAAELAVLR 58
                5677789999999********************99877999887777776 PP

>> LRR_8  Leucine rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.7   0.3    0.0084        25      26      59 ..     356     393 ..     353     395 .. 0.70
   2 ?    1.2   0.0       0.1   3.1e+02      20      36 ..     447     463 ..     425     469 .. 0.74
   3 ?    2.3   0.1     0.046   1.4e+02      27      37 ..     488     498 ..     480     502 .. 0.63
   4 ?   -2.5   0.0       1.5   4.5e+03      50      61 .]     531     542 ..     520     542 .. 0.67
   5 ?   -0.4   0.0      0.34     1e+03       2      13 ..     561     572 ..     560     574 .. 0.63

  Alignments for each domain:
  == domain 1  score: 4.7 bits;  conditional E-value: 0.0084
                 T--EEE--SS--....-GGGGGGGTT--S-.EEE--SS CS
       LRR_8  26 nLkvLdLsnNll....ttlspgafsgLpsLrsLdLsgN 59 
                 +L+ L+L  N+l    t +  +a++g + L++LdLsg+
  KOO21820.1 356 ALTKLSLAKNKLgeegTKFLCDALVGNNILKELDLSGD 393
                 57778888887755554455688888888888888886 PP

  == domain 2  score: 1.2 bits;  conditional E-value: 0.1
                 SSTT-TT--EEE--SS- CS
       LRR_8  20 aFkglsnLkvLdLsnNl 36 
                 a ++++ Lk+Ld s N 
  KOO21820.1 447 ALEQNKTLKELDFSGNM 463
                 45667889999999885 PP

  == domain 3  score: 2.3 bits;  conditional E-value: 0.046
                 --EEE--SS-- CS
       LRR_8  27 LkvLdLsnNll 37 
                 L+++dLs N+l
  KOO21820.1 488 LTSIDLSGNKL 498
                 44455555544 PP

  == domain 4  score: -2.5 bits;  conditional E-value: 1.5
                 S-.EEE--SS-- CS
       LRR_8  50 sLrsLdLsgNrL 61 
                 +L++L + gN++
  KOO21820.1 531 ALTKLSIYGNHI 542
                 566666666665 PP

  == domain 5  score: -0.4 bits;  conditional E-value: 0.34
                 T-SEEE-TTS-- CS
       LRR_8   2 nLtsLdLsnNrl 13 
                 +L sL L +N++
  KOO21820.1 561 KLASLELGFNNI 572
                 566666666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (584 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       352  (0.019633); expected 358.6 (0.02)
Passed bias filter:                      317  (0.0176809); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.54u 0.27s 00:00:00.81 Elapsed: 00:00:00.43
# Mc/sec: 4064.92
//
Query:       KOO21821.1  [L=104]
Description: hypothetical protein Ctob_007226 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (104 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       423  (0.0235931); expected 358.6 (0.02)
Passed bias filter:                      202  (0.0112667); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.39u 0.21s 00:00:00.60 Elapsed: 00:00:00.40
# Mc/sec: 783.01
//
Query:       KOO21822.1  [L=543]
Description: hypothetical protein Ctob_007228, partial [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.3e-23   82.9   4.7      4e-08   33.2   0.1    4.6  5  TIG         IPT/TIG domain
      6e-07   29.4   0.0      0.089   12.8   0.0    3.6  3  TIG_plexin  TIG domain
  ------ inclusion threshold ------
       0.07   13.6   0.1       0.61   10.6   0.0    2.5  2  DUF4350     Domain of unknown function (DUF4350)


Domain annotation for each model (and alignments):
>> TIG  IPT/TIG domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.7   0.0   1.3e-08   7.8e-05       5      72 ..      23      90 ..      20     101 .. 0.92
   2 ?   -1.3   0.1       0.4   2.4e+03      61      85 .]     286     311 ..     276     311 .. 0.63
   3 !   33.2   0.1   6.8e-12     4e-08       3      85 .]     317     398 ..     314     398 .. 0.94
   4 !   24.6   0.0   3.3e-09     2e-05       1      70 [.     402     472 ..     402     488 .. 0.87
   5 ?   -0.2   0.0      0.18   1.1e+03      64      81 ..     522     539 ..     507     543 .] 0.57

  Alignments for each domain:
  == domain 1  score: 22.7 bits;  conditional E-value: 1.3e-08
         TIG  5 sisPnsgsasgGttititGtnFgtnssdssvtiggtpctvta.svssttlvcttPpgpsgllnvsvlvd 72
                 +sP+sg   g t + + Gt+F    s   +++g+t++ v+a +vss +++c + p  s++ +vsv  d
  KOO21822.1 23 GVSPSSGMHTGSTYVRVLGTGF-QPFSGALCRFGDTNASVHAtYVSSEEMRCASVPARSSGASVSVWLD 90
                689*******************.999999****************************999999999876 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 0.4
         TIG  61 psg.llnvsvlvdgaqlrsdnttftY 85 
                 +++ +++v v  +g+q +s+++ f Y
  KOO21822.1 286 VEArGSSVEVASNGQQFTSSSVVFVY 311
                 44446667777777777777777776 PP

  == domain 3  score: 33.2 bits;  conditional E-value: 6.8e-12
         TIG   3 issisPnsgsasgGttititGtnFgtnssdssvtiggtpctvtasvssttlvcttPpgpsgllnvsvlvdgaqlrsdnttftY 85 
                 +ss++P++g+ sg t++t+ G nF    s++++++g++ ++++ +  ++t+ c + p p g ++v +  + +q + + ++ftY
  KOO21822.1 317 VSSVHPERGPESGATLVTVAGANF-GAGSEYKCRFGSATVNASFHAVDSTIHCASSPMPLGRVPVEISLNAQQYTKSFVDFTY 398
                 79**********************.***************9996778********************9999888888888888 PP

  == domain 4  score: 24.6 bits;  conditional E-value: 3.3e-09
         TIG   1 PvissisPnsgsasgGttititGtnFgtnssdssvtiggtpctvta..svssttlvcttPpgpsgllnvsvl 70 
                 P +s++sP+ g+++g t++ +tG+++ +  +++++++++  +++t   s   +tl c++P  ++++l+  ++
  KOO21822.1 402 PALSAVSPSAGPTAGDTLVRLTGDGL-AAGRTYRCRFDDLVVPATLdnSGAASTLLCVSPTMTAASLSAELT 472
                 6789**********************.***************999999*************99666655544 PP

  == domain 5  score: -0.2 bits;  conditional E-value: 0.18
         TIG  64 llnvsvlvdgaqlrsdnt 81 
                 +++v v+ +g+q   +  
  KOO21822.1 522 PVTVEVTLNGQQFGVSTA 539
                 666666666644444444 PP

>> TIG_plexin  TIG domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.0   0.0     0.016        98      13      52 ..      37      77 ..      25      83 .. 0.65
   2 !   12.8   0.0   1.5e-05     0.089       2      53 ..     322     373 ..     321     399 .. 0.74
   3 !    9.3   0.0   0.00018       1.1      15      75 ..     422     484 ..     408     488 .. 0.75

  Alignments for each domain:
  == domain 1  score: 3.0 bits;  conditional E-value: 0.016
  TIG_plexin 13 ltltvenlpalseklkCvFgdlee..seatvsdnkvtCdtPk 52
                +++  + + ++s +  C+Fgd++   ++  vs+++ +C++ +
  KOO21822.1 37 VRVLGTGFQPFS-GALCRFGDTNAsvHATYVSSEEMRCASVP 77
                555555555554.456***9887732445588******9855 PP

  == domain 2  score: 12.8 bits;  conditional E-value: 1.5e-05
  TIG_plexin   2 PsnisvsttseltltvenlpalseklkCvFgdleeseatvs.dnkvtCdtPkp 53 
                 P+  + s ++ +t+  +n+ a  +++kC+Fg+++++++    d++++C++ ++
  KOO21822.1 322 PERGPESGATLVTVAGANFGAG-SEYKCRFGSATVNASFHAvDSTIHCASSPM 373
                 6666667778888888888875.59********888877556******96554 PP

  == domain 3  score: 9.3 bits;  conditional E-value: 0.00018
  TIG_plexin  15 ltvenlpalseklkCvFgdleeseatvs....dnkvtCdtPkpeelppipegkdhvtvkLsirsk 75 
                 lt + l a + +++C+F+dl + +at++     +++ C +P ++      e +  v+++++++s+
  KOO21822.1 422 LTGDGLAA-GRTYRCRFDDL-VVPATLDnsgaASTLLCVSPTMTAASLSAELTREVSLEVALNSQ 484
                 55555544.569********.7888887778899********99988877777777777777765 PP

>> DUF4350  Domain of unknown function (DUF4350)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0    0.0001      0.61      15      59 ..      79     132 ..      78     134 .. 0.86
   2 ?   -1.3   0.0       0.5     3e+03      33      46 ..     450     463 ..     434     474 .. 0.67

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.0001
     DUF4350  15 eaqGvevrrvrk..pfdaleg.......edgtllvvapdlrlteeelaallewv 59 
                 +++G++v+++ +   +d+leg       +++  lvv+ +l+lt+e+++++ ++v
  KOO21822.1  79 RSSGASVSVWLDfeGADELEGlatlhtaGPRGALVVGGELSLTSEQTKQISALV 132
                 6789999999995336699999999999999*******************9987 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 0.5
     DUF4350  33 gedgtllvvapdlr 46 
                 g+ +tll v+p++ 
  KOO21822.1 450 GAASTLLCVSPTMT 463
                 3678*******953 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (543 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       251  (0.0139997); expected 358.6 (0.02)
Passed bias filter:                      200  (0.0111551); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.52u 0.25s 00:00:00.77 Elapsed: 00:00:00.44
# Mc/sec: 3731.82
//
Query:       KOO21823.1  [L=227]
Description: elongation factor ts [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.8e-33  115.9   5.0    5.4e-33  114.3   5.0    2.2  1  EF_TS     Elongation factor TS
     0.0012   18.8   0.1       0.12   12.4   0.0    3.1  3  Bromo_TP  Bromodomain associated
  ------ inclusion threshold ------
      0.058   13.6   0.0       0.12   12.5   0.0    1.5  1  TOBE_2    TOBE domain
      0.059   12.5   0.2      0.072   12.3   0.2    1.1  1  Arb1      Argonaute siRNA chaperone (ARC) complex subunit Arb


Domain annotation for each model (and alignments):
>> EF_TS  Elongation factor TS
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  114.3   5.0   1.2e-36   5.4e-33      75     208 .]      75     218 ..      17     218 .. 0.80

  Alignments for each domain:
  == domain 1  score: 114.3 bits;  conditional E-value: 1.2e-36
       EF_TS  75 eaekevvasYiHgngrigvlvalegksdea.....lkelakqiAmhiaAmnP.qylsedevdaevlekekeilkeqakeegkpekiiekiveGrlekfl 167
                 +a +++v++YiH++ ++gv+v++++++d       l+ela+ iAm++aA    +++s d+++ +++ekek+i  ++   +gkp++i++kiv+Gr+ek +
  KOO21823.1  75 KALEGIVETYIHTGAKLGVMVEVNCETDFVaknptLSELARTIAMQVAACPTvEVVSMDDISPDYIEKEKKIESQAEDLKGKPAAIVDKIVTGRVEKLV 173
                 2246799*******************9976778999*************865489*****************99999999******************* PP

       EF_TS 168 kevcLleQeyvkddkktVeqvlkeaske....lkvvkfvrfevGe 208
                 k   Ll+Q+y+ d++ tV++++++  ++    ++v +fvrf+vGe
  KOO21823.1 174 KTKLLLDQPYIRDPSITVKDLISQYITKmgenIRVSRFVRFNVGE 218
                 *****************997777665555666************8 PP

>> Bromo_TP  Bromodomain associated
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.4   0.0   2.7e-05      0.12       3      35 ..       2      34 ..       1      41 [. 0.89
   2 ?   -0.8   0.0      0.35   1.6e+03      31      42 ..      76      87 ..      64     102 .. 0.74
   3 ?    2.2   0.0     0.039   1.8e+02      33      46 ..     192     205 ..     190     213 .. 0.82

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 2.7e-05
                HHHHHHHHHHHHHHHHHT-SEE-HHHHHHHHHH CS
    Bromo_TP  3 larsllkvvvsqileeaGfdsaeesaLEtLtei 35
                l+r++l  vv++++++aG++ + ++ +  L+e 
  KOO21823.1  2 LYRQTLLLVVASLCAAAGYSTVSAGDVKKLREA 34
                799*****************9999888887775 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 0.35
                HHHHHHHHHHHH CS
    Bromo_TP 31 tLteiaqkYire 42
                +L +i+++Yi+ 
  KOO21823.1 76 ALEGIVETYIHT 87
                688999999985 PP

  == domain 3  score: 2.2 bits;  conditional E-value: 0.039
                 HHHHHHHHHHHHHH CS
    Bromo_TP  33 teiaqkYirelgeq 46 
                 ++++ +Yi+++ge 
  KOO21823.1 192 KDLISQYITKMGEN 205
                 688999******97 PP

>> TOBE_2  TOBE domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   2.8e-05      0.12      15      56 ..      72     115 ..      58     123 .. 0.79

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 2.8e-05
      TOBE_2  15 g.anglsGtVedveylGsstryvvelaggqlvvvrqpnadr.ds 56 
                 + +++l+G Ve  ++ G+ + ++ve+  ++++v++ p  ++ ++
  KOO21823.1  72 AsRKALEGIVETYIHTGAKLGVMVEVNCETDFVAKNPTLSElAR 115
                 32359**************************8888887775444 PP

>> Arb1  Argonaute siRNA chaperone (ARC) complex subunit Arb1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.2   1.6e-05     0.072     191     314 ..      38     159 ..      29     189 .. 0.75

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 1.6e-05
        Arb1 191 ElpkiaallaklPGdFntAcstlfggaykeyseeeswaeeeeeekglskekakkvfkaavaalgseeqaeklaekaeekkalavveeeeqglevveiel 289
                  ++k++++la++ GdF++A+ +l ++  ++ +++ s +  e  +++  ++ ak  +++ v +  +   ++k ++  e ++++a+++    ++evv++  
  KOO21823.1  38 GMMKCKEALAEANGDFEKAVEELRKKGLASAEKKASRKALEGIVETYIHTGAKLGVMVEVNC--ETDFVAKNPTLSELARTIAMQVAACPTVEVVSMDD 134
                 5899********************99777555444432222224444455555555544444..45566777899999999999999*********999 PP

        Arb1 290 pseevkeiyeelakkekkkklkpvG 314
                  s ++ e+ +++++++++ k kp++
  KOO21823.1 135 ISPDYIEKEKKIESQAEDLKGKPAA 159
                 9999999988888877655666554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (227 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       782  (0.0436165); expected 358.6 (0.02)
Passed bias filter:                      513  (0.0286129); expected 358.6 (0.02)
Passed Vit filter:                        47  (0.00262145); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.43u 0.26s 00:00:00.69 Elapsed: 00:00:00.40
# Mc/sec: 1690.32
//
Query:       KOO21824.1  [L=435]
Description: cupin superfamily protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.5e-29  103.5   0.9    6.9e-29  101.3   0.9    1.9  1  Cupin_8   Cupin-like domain
     0.0016   18.0   0.0      0.024   14.1   0.0    2.2  1  Cupin_4   Cupin superfamily protein
     0.0023   18.3   0.1     0.0047   17.3   0.1    1.6  1  JmjC      JmjC domain, hydroxylase


Domain annotation for each model (and alignments):
>> Cupin_8  Cupin-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  101.3   0.9   1.2e-32   6.9e-29       2     250 ..      91     327 ..      90     330 .. 0.80

  Alignments for each domain:
  == domain 1  score: 101.3 bits;  conditional E-value: 1.2e-32
     Cupin_8   2 eeffreyvakskPviikgalkdwpalqkwtddeylleylkekaedvkvsvektpdgeadsfkeneelkfvkpeeeemtfkdfldelearrdtrsepyay 100
                 ++f+++yva  +Pv++ ga+   +   +wt+  ++l++    ++ +  +  ++ +++  s  +++    ++ + e  +f +fl+ + + +   ++  +y
  KOO21824.1  91 RAFYEKYVAAAEPVVLAGAAAAATSGVEWTN--EFLSRWCHLDNGRPWHAIVEMNKVIVSNTRHPL--LQEIAGEPVNFCTFLRDYLKPE---YKDNMY 182
                 6799****************99999999*94..788888888888888876665444433343333..3445667777777777777764...444555 PP

     Cupin_8 101 lqnanlasefpelkedsdlp...fateafgkkpeavnlWlGnsasvsslHkDhyeNlycvvrGrKkftLfpPsdapflyeaslsptedgtvvssvdvee 196
                 l  ++l++   +l ++ ++p    ++e+ ++  +++ lW++  +s+sslH D +eNl+ +v G+K + +fpPs++++ y   +    d+   s+v +e+
  KOO21824.1 183 LI-SPLTDPGVQLGKHVEMPsvlQCPEIHES-VHETRLWMSSGNSSSSLHSDTHENLMLQVFGTKSVYMFPPSQSHKTYMDYH----DRYGLSPVHPER 275
                 54.5666666667776555533355666555.6778*******************************************9973....5679******** PP

     Cupin_8 197 pdlekfprlkdakkalevtlnaGevLylPalWfHeVkslaeeplhlavnywydm 250
                 +dl+k p + + +  ++++l+ G++L +P++W+H+V++  ++  ++av + +++
  KOO21824.1 276 VDLDKWPMFAQLEGGMVAHLHGGDALMIPEGWWHQVRTR-PG-RNAAVTWEFEP 327
                 ************9************************99.55.59****99987 PP

>> Cupin_4  Cupin superfamily protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.1   0.0     4e-06     0.024     122     221 ..     222     335 ..     201     341 .. 0.64

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 4e-06
                 -TTBBSS-SEE-SSEEEEEEEEC-EEEEEE-.................SCCCTTSSSEE--TTCCG--.......S-SEEEEE-TT-EEEE-TT-EEEE CS
     Cupin_4 122 pggsqgvgpHyDdyDVfllQleGrkrWrvyk.................ptvpelelkseeplkildef.......epvedfvLepGDlLYlPrgviHqg 196
                  g+ ++   H D ++ ++lQ+ G+k   vy                         l +  p++ + ++       e      L  GD L +P g++Hq 
  KOO21824.1 222 SGN-SSSSLHSDTHENLMLQVFGTKS--VYMfppsqshktymdyhdryG------LSPVHPERVDLDKwpmfaqlEGGMVAHLHGGDALMIPEGWWHQV 311
                 444.6777888888888888888886..444446667755543333220......222333333222211112113333346999************** PP

                 EBBT-CCEEEEEECCEEHCCHHHCH CS
     Cupin_4 197 vaedesltlSvglraptaaellesv 221
                 ++   + + +v      ++ell+++
  KOO21824.1 312 RTRP-GRNAAVTWEFEPYEELLNNF 335
                 **95.88888888888888888776 PP

>> JmjC  JmjC domain, hydroxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   0.1   7.8e-07    0.0047       3     114 .]     219     325 ..     217     325 .. 0.84

  Alignments for each domain:
  == domain 1  score: 17.3 bits;  conditional E-value: 7.8e-07
                 EEE-TT-EEEEE--GGG-EEEEEEEEES-EEEEEE-GGGHHHHHHHHHHHHHCCSTTG.CCTTTCEE-HHHHHHTT---EEEEE-TT-EEEE-TT-EEE CS
        JmjC   3 ylgmpksttpwhiedqglySinylhfgapkvWyiipeekkeklekvlskknskeqpdl.lrhkstlispkqlekegipvyrfvqkpgefVfvfpgayHs 100
                  +++ +s+ + h ++++ +   +l + ++k  y++p+++++k    ++++ ++  p +  r   ++++   + ++       + + g++++++ g++H+
  KOO21824.1 219 WMSSGNSSSSLHSDTHENL---MLQVFGTKSVYMFPPSQSHKTYMDYHDR-YGLSPVHpERVDLDKWPMFAQLEG---GMVAHLHGGDALMIPEGWWHQ 310
                 678889999*******999...5667777889******************.578899977888888777776666...467899*************** PP

                 EEE.SSSEEEEEEEE CS
        JmjC 101 vfn.lgfniaeavnf 114
                 v +  g n a++++f
  KOO21824.1 311 VRTrPGRNAAVTWEF 325
                 *87359999999987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (435 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       352  (0.019633); expected 358.6 (0.02)
Passed bias filter:                      263  (0.014669); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.49u 0.25s 00:00:00.74 Elapsed: 00:00:00.41
# Mc/sec: 3214.06
//
Query:       KOO21825.1  [L=282]
Description: inositol monophosphatase 1 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.4e-46  159.2   0.1    1.7e-46  159.0   0.1    1.0  1  Inositol_P  Inositol monophosphatase family


Domain annotation for each model (and alignments):
>> Inositol_P  Inositol monophosphatase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  159.0   0.1   9.4e-51   1.7e-46       7     269 ..       2     275 ..       1     277 [. 0.88

  Alignments for each domain:
  == domain 1  score: 159.0 bits;  conditional E-value: 9.4e-51
                 HHHHHHHHHHHHHHHHHTT..TSEEEESTTTCCHHHHHHHHHHHHHHHHHHHHHHHHSTTSEEEHHCHHHHCC...CT.SSSSSEEEEEEEEETHHHHH CS
  Inositol_P   7 kaavelaakagevlreefs..enelvieekskegeedlvtaadeaveelilealaekfpshkilgeetlakge...kseltedgltwivDPiDGTknFv 100
                 ++av+la ++ge++ e++   + +   + k +++  d++ta+d a e+l++++l+  fp+h+++gee+ a++    +  ++++ +twivDPiDGT nF 
  KOO21825.1   2 EVAVRLAVQCGEAMLEAIAavDSQSGLNLKDGKHGIDPQTATDLANERLVIDTLKLIFPTHAVIGEESCAAAGgkvPM-VDPSVPTWIVDPIDGTQNFC 99 
                 578888889999999999877666666666678999***********************************9987444.55555*************** PP

                 HT-SG-EEEEEEEETTEEEEEEEEETTTTEEECEETTTEEEETCEEEEECTTS.EGGGTEEEEEESSSSSSHHHHCHHHHHHHCCCCCH..EEEBESSH CS
  Inositol_P 101 rgipqvaVsigllvegkpvlGviaqPllgqlysaakgkGaflngeklplsrap.piseallvtlfavssrkdtseasllekvesavsae..gvrsvgss 196
                    p   Vsigl  +g+p lGvi++P+ ++l+ +++ +Ga+lng ++++  +   +++a+++t + +++ ++  +  l +++e+++ a   gvr vgs+
  KOO21825.1 100 TSLPLSVVSIGLCLNGVPALGVIYDPFRDELFVGVAAEGAYLNGVRMRADAKRtALDKAMVLTDVGYERSPKGAR-RLAACHEALLLANtfGVRIVGST 197
                 ********************************************9999888887899******999998888888.666677666666678******** PP

                 HHHHHHHHHTSTSEEEEEC.....EBHHHHHHHHHHHHHTTEEEEESSSC.SSSTTSSEEEEESCHHHHHHHHHHHCC CS
  Inositol_P 197 alklaavaeGkadaylefg....rekkWDhAAGeaileeaGGvvtdakge.grlllargiiaanqkelaellaaavee 269
                  l+la+va+G+a a++         k WD +A+ ai  + G v++ a+ + +++l + ++ aa +++la+ l +++++
  KOO21825.1 198 VLALAWVAAGRASAFYVGLhkkdVPKAWDWCAAKAIGDASGVVFLRAENDiPFDLTSPSVCAAGSEALAKTLRRTLCQ 275
                 *************99887556789*****************999999999*****99999999977777777766655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (282 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       230  (0.0128284); expected 358.6 (0.02)
Passed bias filter:                      183  (0.0102069); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.25s 00:00:00.68 Elapsed: 00:00:00.42
# Mc/sec: 2036.29
//
Query:       KOO21826.1  [L=123]
Description: rRNA processing protein rrp7 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.3e-27   94.6   9.1    5.5e-27   94.3   9.1    1.1  1  RRP7      Ribosomal RNA-processing protein 7 (RRP7) C-termina
  ------ inclusion threshold ------
        1.6    9.6   9.0        7.8    7.4   5.8    2.3  2  TMA7      Translation machinery associated TMA7
        1.8    9.5   7.0       0.35   11.8   2.4    2.1  2  DUF5339   Family of unknown function (DUF5339)


Domain annotation for each model (and alignments):
>> RRP7  Ribosomal RNA-processing protein 7 (RRP7) C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   94.3   9.1   9.2e-31   5.5e-27      18     118 ..       1     115 [.       1     116 [. 0.81

  Alignments for each domain:
  == domain 1  score: 94.3 bits;  conditional E-value: 9.2e-31
        RRP7  18 meefdkeeeeekkeekkkeeevDeDGfvtVtrgkkaaa.keea..............aeekakkkekkkkkkkelldFYrFQirekkkeelaeLrkkFe 101
                 me+f+++e+e++++++++++++D+DGfv+Vtr+k++++ ++e+              +e  +   +kk+k+  ++ dFY FQ+ ekk+e+l +Lr++Fe
  KOO21826.1   1 MEHFEAQERERERAADAMHNQMDDDGFVLVTRKKTGRNtSTETatgatvqvaatsggDEPGSGPPKKKRKQ-MDTADFYHFQQHEKKREQLLKLREQFE 98 
                 99******************************553333322224678888888876544444444555544.4555*********************** PP

        RRP7 102 eDkekieelkekrkfkp 118
                 +Dke+i++++++rkfkp
  KOO21826.1  99 QDKERIARMRASRKFKP 115
                 ****************9 PP

>> TMA7  Translation machinery associated TMA7
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.8   0.1     0.036   2.2e+02      27      59 ..       4      35 ..       2      38 .. 0.69
   2 ?    7.4   5.8    0.0013       7.8      13      47 ..      65      99 ..      55     112 .. 0.84

  Alignments for each domain:
  == domain 1  score: 2.8 bits;  conditional E-value: 0.036
        TMA7 27 fkqkqkeeekalkelkakaagkGplgggGiKKS 59
                f ++++e e+a +++ +++   G       KK+
  KOO21826.1  4 FEAQERERERAADAMHNQMDDDGFVLV-TRKKT 35
                667788888888899888888775444.45555 PP

  == domain 2  score: 7.4 bits;  conditional E-value: 0.0013
        TMA7 13 pKkkkkelDeeDlafkqkqkeeekalkelkakaag 47
                pKkk k++D  D  + q+  ++ ++l +l+++ ++
  KOO21826.1 65 PKKKRKQMDTADFYHFQQHEKKREQLLKLREQFEQ 99
                9***********98888888888888889988776 PP

>> DUF5339  Family of unknown function (DUF5339)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.4   0.2      0.38   2.2e+03      23      37 ..       9      23 ..       2      25 .. 0.65
   2 ?   11.8   2.4   5.8e-05      0.35      19      48 ..      80     109 ..      67     114 .. 0.88

  Alignments for each domain:
  == domain 1  score: -0.4 bits;  conditional E-value: 0.38
     DUF5339 23 pgtktqadaikkqle 37
                 + +  ada+ +q++
  KOO21826.1  9 RERERAADAMHNQMD 23
                556667788888776 PP

  == domain 2  score: 11.8 bits;  conditional E-value: 5.8e-05
     DUF5339  19 aekqpgtktqadaikkqleqsKkqilalpk 48 
                 +++ +++ +q+ +++ q+eq K+ i+ + +
  KOO21826.1  80 FQQHEKKREQLLKLREQFEQDKERIARMRA 109
                 556799********************9976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (123 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1705  (0.0950973); expected 358.6 (0.02)
Passed bias filter:                      713  (0.039768); expected 358.6 (0.02)
Passed Vit filter:                        63  (0.00351386); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.43u 0.23s 00:00:00.66 Elapsed: 00:00:00.39
# Mc/sec: 949.23
//
Query:       KOO21827.1  [L=266]
Description: hypothetical protein Ctob_004750 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.3e-12   47.4   0.4    1.2e-11   44.3   0.4    2.3  1  Chromo         Chromo (CHRromatin Organisation MOdifier) doma
    8.1e-08   32.3   0.0      0.014   15.5   0.0    2.5  2  Chromo_shadow  Chromo shadow domain
    0.00065   20.3   0.0     0.0014   19.3   0.0    1.5  1  ARID           ARID/BRIGHT DNA binding domain
  ------ inclusion threshold ------
      0.051   13.4   2.7      0.095   12.5   2.7    1.5  1  VID27_N        VID27 N-terminal region
       0.24    9.4   6.0        0.3    9.0   6.0    1.1  1  FRQ            Frequency clock protein


Domain annotation for each model (and alignments):
>> Chromo  Chromo (CHRromatin Organisation MOdifier) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.3   0.4   3.4e-15   1.2e-11       1      54 []      68     127 ..      68     127 .. 0.92

  Alignments for each domain:
  == domain 1  score: 44.3 bits;  conditional E-value: 3.4e-15
                 EEEEEEEEEEEETTEECEEEEEEETTSTG........GGT.EEEEGGGCSSHSHHHHHHHHHH CS
      Chromo   1 yeVerIidhrtdkdgleleYlVKWkglpy........sen.tWEpeenlekcfqelideFkkr 54 
                 +eVe I+d+rtd++g+  eYlVKWk+           + n tWEp+++l+ c +el+++F+++
  KOO21827.1  68 FEVEDILDSRTDDKGN-IEYLVKWKDAAGdddgeeadELNmTWEPRAHLA-C-PELLQQFEEK 127
                 69**************.*********988788988886678********9.9.9******986 PP

>> Chromo_shadow  Chromo shadow domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.4   0.0   8.2e-06     0.029       1      38 [.      69     108 ..      69     127 .. 0.72
   2 !   15.5   0.0   3.9e-06     0.014      29      53 .]     241     265 ..     212     265 .. 0.90

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 8.2e-06
                    TTTTTEEE.EEETS-EEEEEEETT..S-EEE.EEHHHHHHH CS
  Chromo_shadow   1 epekiiga.vdtsgelmflikWkn..gekaelvpskeanqk 38 
                    e+e+i+++ +d +g++ +l+kWk+  g+     ++ e+n+ 
     KOO21827.1  69 EVEDILDSrTDDKGNIEYLVKWKDaaGDDDG-EEADELNMT 108
                    689*****679*************7744444.566666655 PP

  == domain 2  score: 15.5 bits;  conditional E-value: 3.9e-06
                    .EEHHHHHHHSHHHHHHHHHCT-XX CS
  Chromo_shadow  29 lvpskeanqkcPqkvikFYEerltw 53 
                    l p++ ++ ++P ++ +FYE+rl++
     KOO21827.1 241 LLPNEKLRNEAPLLLVDFYEQRLQF 265
                    6899999****************98 PP

>> ARID  ARID/BRIGHT DNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.3   0.0   3.9e-07    0.0014      38      87 ..      10      52 ..       6      53 .. 0.85

  Alignments for each domain:
  == domain 1  score: 19.3 bits;  conditional E-value: 3.9e-07
                HHTTTSSHHHHTT.CHHHHHHHHHTS-..-.......HHHHHHHHHHHHH CS
        ARID 38 aVikrGGfrkvtqknkWeevaqklglpredpeasesvaqalksiYeryLl 87
                +V ++GG++k+++  +W ++a+ lgl +       + aqa+k+ Ye++L 
  KOO21827.1 10 IVARSGGYEKIEKYGQWMRIANSLGLRK-------DQAQAVKARYEDMLR 52
                78889******88799**********64.......447999*99999986 PP

>> VID27_N  VID27 N-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   2.7   2.7e-05     0.095      78     126 ..      54      99 ..      39     140 .. 0.77

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 2.7e-05
     VID27_N  78 eeeeeddeakkekdekvflldeeLkfrveekedgekvlaWrdlsgdegd 126
                 + e ++   +++++++ f +++ L+ r+++k + e  + W+d  gd++ 
  KOO21827.1  54 SAEADE---REDEEDEEFEVEDILDSRTDDKGNIEYLVKWKDAAGDDDG 99 
                 222222...46778899**************9999********999763 PP

>> FRQ  Frequency clock protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.0   6.0   8.5e-05       0.3     858     974 ..      55     169 ..      47     179 .. 0.73

  Alignments for each domain:
  == domain 1  score: 9.0 bits;  conditional E-value: 8.5e-05
         FRQ 858 sddeassdeddeeesseelvsrranphqsdgYpdkvdlssgdeegeepddddeakekeeedssdekklprlprearrassssaeaaaGtargrsksasa 956
                  + ++ +de+dee + e+++++r+ ++   +Y  k + ++gd++gee d+ + + e +  +    + l++  +++rr + +s++aa+G+     +   a
  KOO21827.1  55 AEADEREDEEDEEFEVEDILDSRTDDKGNIEYLVKWKDAAGDDDGEEADELNMTWEPR-AHLACPELLQQFEEKQRRMQFGSSVAASGDGDDDGEE-GA 151
                 34444455555666788999999999999999999999*********99876666555.556777788888899999999****999985444333.33 PP

         FRQ 957 eallkatgssvataGgve 974
                  a++  ++ss+  a ++e
  KOO21827.1 152 TAAPGPGASSADGAAAIE 169
                 446667777776666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (266 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       896  (0.0499749); expected 358.6 (0.02)
Passed bias filter:                      575  (0.0320709); expected 358.6 (0.02)
Passed Vit filter:                        50  (0.00278878); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.48u 0.29s 00:00:00.77 Elapsed: 00:00:00.43
# Mc/sec: 1851.94
//
Query:       KOO21828.1  [L=217]
Description: tetrapyrrole-binding protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.3e-42  145.2   0.0    1.6e-42  144.9   0.0    1.1  1  GUN4      GUN4-like


Domain annotation for each model (and alignments):
>> GUN4  GUN4-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  144.9   0.0   9.1e-47   1.6e-42       4     139 ..      59     204 ..      56     205 .. 0.90

  Alignments for each domain:
  == domain 1  score: 144.9 bits;  conditional E-value: 9.1e-47
                 S---THHHHHHHHTT-HHHHHHHHHHHHHHHH-HHHHHHTS--HHHHHTS-HHHHHHHHHHHHHTTTT-SSHHHHHHHH..HHTTT-HHHHHHHTTSE. CS
        GUN4   4 kgidYskLqelLaagefeeADeetlklllelageeavkrgwlyfeevenfpvedlktidkLWvkySegkFGfsvQkkiw..eslggtlekfakkvgWk. 99 
                  g+dY +L ++L+agef+eAD++t++ l++lag++av+rg++yf+ev n+pved++ti++LW++yS gkFG++vQ++ +  +++++++e+f++++gWk 
  KOO21828.1  59 CGFDYVPLLTALQAGEFREADQLTRDALITLAGDKAVDRGYVYFTEVPNLPVEDMATIERLWQAYSGGKFGYAVQAQAYmsKKVNRNFETFFERIGWKk 157
                 689***************************************************************************94456788************4 PP

                 ...ETTEE...SSTTTS--STT.S-TT--S---CCC-SHHHHHHHTS CS
        GUN4 100 ...eekkw...tkydeftfsls.apeGhlPltnalrgvrllealleh 139
                    +  +w    k def+++++ ap+GhlPlt++lrg++ll+ ll+h
  KOO21828.1 158 adgTLVRWlpeAKNDEFIYDVDkAPKGHLPLTSTLRGQQLLKGLLTH 204
                 3332335655445566*****99*********************999 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (217 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       292  (0.0162865); expected 358.6 (0.02)
Passed bias filter:                      270  (0.0150594); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.26s 00:00:00.67 Elapsed: 00:00:00.41
# Mc/sec: 1587.78
//
Query:       KOO21829.1  [L=194]
Description: hypothetical protein Ctob_004756 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.6e-45  154.9   0.0    3.2e-45  154.5   0.0    1.1  1  UPF0172   Uncharacterised protein family (UPF0172)


Domain annotation for each model (and alignments):
>> UPF0172  Uncharacterised protein family (UPF0172)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  154.5   0.0   1.8e-49   3.2e-45       3     188 ..       9     187 ..       7     190 .. 0.88

  Alignments for each domain:
  == domain 1  score: 154.5 bits;  conditional E-value: 1.8e-49
     UPF0172   3 evssqAYvKlllHaaKyptqaVnGvLlgkkssskskvevtDavPLfHssltlspmlevAlaqvesyakekglvivGyYqanerlsdtelsslaekiadk 101
                  ++++AY+ l+lH+++ypt++ nG+Llg+   ++s v v+ + PLfH++++l+pmle+Al ++++y++++gl+ivGyYqane ++d +l +++++i dk
  KOO21829.1   9 ALKADAYTVLFLHCCRYPTRSLNGLLLGSAAADGS-VSVEMTLPLFHTQISLAPMLEAALLLADEYCQQNGLQIVGYYQANELVDDLDLGPFGKRISDK 106
                 67899****************************97.*************************************************************** PP

     UPF0172 102 iaenfsdavllvvdnkkleseseeeallalykkdslgkwkkkkesseakekkasalealsnlldkkkyeklvDFddHLddvsldwln 188
                 i+++++ a+++vvd  +++ ++++  l +l+++   gk      +   + +++ +   l+++++++ +++++DFd HLdd++++wl 
  KOO21829.1 107 IRSQVPAAAVFVVDGASMHPSATD--L-RLITQGADGKRG---AAPFIEGDAEGCIVRLERCIANSLQHEIIDFDAHLDDPEKNWLG 187
                 ***************999666665..3.444444423222...233333445699******************************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (194 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       300  (0.0167327); expected 358.6 (0.02)
Passed bias filter:                      285  (0.015896); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.25s 00:00:00.65 Elapsed: 00:00:00.41
# Mc/sec: 1431.79
//
Query:       KOO21830.1  [L=279]
Description: aminotransferase, classes I and II [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
     0.0034   16.6   0.0        0.4    9.8   0.0    2.1  2  Aminotran_1_2  Aminotransferase class I and II


Domain annotation for each model (and alignments):
>> Aminotran_1_2  Aminotransferase class I and II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.8   0.0   2.2e-05       0.4      42     121 ..      26      98 ..       9     105 .. 0.85
   2 !    4.9   0.0   0.00069        12     277     340 ..     122     199 ..     111     222 .. 0.87

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 2.2e-05
                    BTTHHHHHHHHHHHHHCTCTTCHTTGGEGEEEESHHHHHHHHHHHHHHHTTT-EEEEEESS-THHHHHHHHTTSEEEEEE CS
  Aminotran_1_2  42 pidglpeleealakflgrseklklkreaavvvgsGagaliealifllklnpgdeilvpdptyasyknilrlsggevvryp 121
                    +++g+p l+ ++a  ++   ++++ +  +v+v +   ++i + +++l l pgd ++   p y s ++++r  g+e +   
     KOO21830.1  26 HNEGSPWLRREIAAIYS--GGIDERQI-NVCVPQ---EGIYLTARAL-LSPGDHVVTTVPHYQSLSEVARSIGCEARIAQ 98 
                    56788999999999999..77777777.888885...7888888888.88************************987666 PP

  == domain 2  score: 4.9 bits;  conditional E-value: 0.00069
                    HHHHHHHHHHHHHHHHHHS.........TEEEECCSCSSEEEEEETHH.....CHHHHHHHHHHTCTEEEEEGGGGTS CS
  Aminotran_1_2 277 mrqrlqkrrkelrdeLael.........glkvlasqsgmflltdlsae.....takelskkLleevgvyvtpgtsftv 340
                    +   l +++  l ++L+++          l++ ++ +g f +++l+       +a++ +++L+ + g+ ++pgt f  
     KOO21830.1 122 RPTLLTRSHALLAAGLEAAravvgahpeHLEWAEPRAGTFAFVRLRGRtgvpvDAEAYCDALRARAGLMLMPGTLFDH 199
                    55667788889999998889999999999***********************999******************98865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (279 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       274  (0.0152825); expected 358.6 (0.02)
Passed bias filter:                      209  (0.0116571); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.23s 00:00:00.65 Elapsed: 00:00:00.39
# Mc/sec: 2125.50
//
Query:       KOO21831.1  [L=611]
Description: 16s ribosomal RNA methyltransferase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      3e-41  141.2   0.0    4.4e-37  127.6   0.0    2.1  2  Methyltrans_RNA  RNA methyltransferase
      1e-05   24.7   0.0    0.00022   20.3   0.0    2.5  2  Glyco_hydro_79n  Glycosyl hydrolase family 79, N-terminal dom


Domain annotation for each model (and alignments):
>> Methyltrans_RNA  RNA methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.2   0.0   9.3e-06     0.083       3      30 ..     417     444 ..     415     451 .. 0.89
   2 !  127.6   0.0   4.9e-41   4.4e-37      62     224 ..     449     607 ..     443     609 .. 0.92

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 9.3e-06
                      EEHHHHHHHHTTTT--TT-EEEEEESSS CS
  Methyltrans_RNA   3 ltdeeahHlvkVlRlkegdeiklfdgdg 30 
                      l+d++ hHl++V+R +eg ++ +f+g +
       KOO21831.1 417 LSDAQRHHLYSVMRQREGGSVAVFNGVD 444
                      7899*********************865 PP

  == domain 2  score: 127.6 bits;  conditional E-value: 4.9e-41
                      EEEEEEE--SSHHHHHHHHHHHHTT-SEEEEEE-TTSSS...HHHHHHHHHHHHHHHHHHHHHHT-SS--EEEEEEEHHHHHHHCSCCEEEEEE CS
  Methyltrans_RNA  62 kitlaqalpkgdklelilqkatElGvseivplisersvvkldekkkdkklerwqkilieAaeQsgrtrlpevkepislkelleelkeadlklil 155
                        +l+++++kg +l  +++ka+ElG++e++p+ ++++         + ++er+ +i+ eA eQsgr+++p v+ep++l+ +l+ +++ +   ++
       KOO21831.1 449 STVLLFGVLKGARLPTLIEKAVELGADELQPVLTQHCA------VRSLNVERLGAIAVEASEQSGRLTVPCVREPQPLQAVLDGWDALRPLCVC 536
                      47899********************************5......566****************************************9989999 PP

                      ETTSSEBGGGSSHCCHTHHCS..EEEEEE--TT---HHHHHHHHH.TTCEEEB-SSS---HHHHHHHHHHHH CS
  Methyltrans_RNA 156 deeekksleelsekkkelkev..kvlliiGPEGGfsekEiellke.agfkpvsLgpriLRteTAalaalsal 224
                      de++ +++ +ls++ ++ + +   + ++iGPEGGfs++E e l+    ++pvsLg +iLR+eTAalaa++++
       KOO21831.1 537 DERRLDDTPTLSARLADGS-LdaGAGVLIGPEGGFSAEEFETLETlPFVRPVSLGANILRAETAALAAMAII 607
                      ***9999888888887654.358**********************88899*******************997 PP

>> Glyco_hydro_79n  Glycosyl hydrolase family 79, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.3   0.0   2.4e-08   0.00022      48     198 ..      54     193 ..      49     211 .. 0.81
   2 ?    1.0   0.0     0.018   1.6e+02     258     303 ..     333     381 ..     327     388 .. 0.71

  Alignments for each domain:
  == domain 1  score: 20.3 bits;  conditional E-value: 2.4e-08
  Glyco_hydro_79n  48 dlsnkilanaikafsplrirlGGslqdkvvyevgekkkpckefkkkedelfgfseGclelkrWdelnelfkktgalvtfglnalkgrkkkskgv 141
                      d  ++ l    +a++p  +r+GG+  d+ +y ++ +  p ++          f+   l+ ++ d + ++ +  g  +++++na  g +     +
       KOO21831.1  54 DFARPRLRGLAQALAPAYLRIGGTEADRSFYALDGS-DPTTPPA-------PFT-SVLHARHLDAVGDFARAVGFELMLTVNAGWGAR-----S 133
                      666677777789999999999999999999998733.3333222.......233.4799999*********************98865.....4 PP

  Glyco_hydro_79n 142 lkGeWdssnaedlikytvskgykidswelGnelsgsgv...gakveaeqyakdvielkki 198
                      ++G+W s +++ l++y+ ++ + ++  elGne ++      g  ++ e+ya+d+ +l + 
       KOO21831.1 134 VHGAWLSDQTRTLLRYVRTHSIPLTVLELGNEPNAWPYlqrGLAISPERYAQDLLALTSA 193
                      679*****************************9997551115669*********999765 PP

  == domain 2  score: 1.0 bits;  conditional E-value: 0.018
  Glyco_hydro_79n 258 ildpsyldkvaetfkdlqktlkesgpsa...saWvgeaGGaynsGgklv 303
                      + +p++ld+va   + +++t   ++p +   + W+ge+G a   G+  v
       KOO21831.1 333 LSSPAVLDRVAVWGRAVRATTLAVEPPSrrpAVWLGETGSAQAGGQPGV 381
                      567888888887777777665555443311168*********9999877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (611 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       266  (0.0148363); expected 358.6 (0.02)
Passed bias filter:                      216  (0.0120475); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.52u 0.22s 00:00:00.74 Elapsed: 00:00:00.38
# Mc/sec: 4795.81
//
Query:       KOO21832.1  [L=1069]
Description: hypothetical protein Ctob_004755 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.7e-05   23.8   0.0      0.031   14.4   0.0    4.1  4  Xpo1            Exportin 1-like protein
     0.0059   16.6   0.2      0.095   12.8   0.1    3.1  3  Importin_rep_3  Importin 13 repeat
  ------ inclusion threshold ------
       0.12   12.3   0.0        0.4   10.6   0.0    2.0  1  IBN_N           Importin-beta N-terminal domain


Domain annotation for each model (and alignments):
>> Xpo1  Exportin 1-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.7   0.0      0.04   2.4e+02       6      58 ..     109     160 ..     105     168 .. 0.87
   2 !   14.4   0.0   5.1e-06     0.031      76     127 ..     200     254 ..     195     280 .. 0.81
   3 ?   -3.1   0.0       1.2   7.2e+03      31      80 ..     616     667 ..     610     684 .. 0.59
   4 ?    1.9   0.0     0.036   2.2e+02       3      96 ..     751     837 ..     749     849 .. 0.75

  Alignments for each domain:
  == domain 1  score: 1.7 bits;  conditional E-value: 0.04
                 HHHHHHHHHHHHHHTTTTSTTHHHHHHHHHCT..HHHHHHHHHHHHHHHHHHHT CS
        Xpo1   6 nklaealaelflqeypnnWpsffddllsllss.spsglelllriLkvlpeEiad 58 
                 ++l++ala+ +++      +sf +d l l +  s +g  + +++L +lp+E+ +
  KOO21832.1 109 KQLCLALAAAAVRS--GALESFATDALTLAKDpSGKGAAVAIELLIALPQELLE 160
                 79999*******99..8999*****9999999779999*************986 PP

  == domain 2  score: 14.4 bits;  conditional E-value: 5.1e-06
                 HHHHHHHHHHHHHHHHHHHHHCC..HHHHHHHHHHHHHHHHTT.TS-HHHHHTSC CS
        Xpo1  76 lrsnvqkilelllqileqsqskk..qsselveavLkclsswvs.widiglivnnp 127
                 lr  ++++l+ll+ ++e    ++  +++e v ++Lkcl++w s ++  +l++  +
  KOO21832.1 200 LRGLLPQVLQLLTAVVEHFGAGSgpEHAECVTQCLKCLEKWNSlEMGYSLVMLAD 254
                 6666899***********9999899****************99999999998644 PP

  == domain 3  score: -3.1 bits;  conditional E-value: 1.2
                 HHHHHCT.HHHHHHHHHHHHHHHHHHHT.SHTTTSCHHH.HHHHHHHHHHHH CS
        Xpo1  31 llsllssspsglelllriLkvlpeEiad.fsrskleqer.rndlkdllrsnv 80 
                 ll+ +++ +s +el+ ++  +l+e +a  + + + + ++ r++l +llr+ +
  KOO21832.1 616 LLRVCEPALSNVELTAELRIALAEGLARlVAELPSRDDQaRSALTELLRTPC 667
                 5566666666666666666666666666544444444444666666666554 PP

  == domain 4  score: 1.9 bits;  conditional E-value: 0.036
                 HHHHHHHHHHHHHHHHHTTTTSTTHHHHHHHHHCT.HHHHHHHHHHHHHHHHHHHTSHTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
        Xpo1   3 flrnklaealaelflqeypnnWpsffddllsllssspsglelllriLkvlpeEiadfsrskleqerrndlkdllrsnvqkilelllqileqsqs 96 
                 ++++ ++e++++++  + +  ++ ++++ll+ l         +  +L++l + i ++ r     +++ +l+d+l   +++++++++  l++ ++
  KOO21832.1 751 VVVQAMCELYSRMMATM-GMLMRPLLPQLLHELARTFP-STPVVGVLSTLRDAIEQYGR-----QQDDELHDTLLFVMSELVNFFCAWLSSTKE 837
                 56677777777777777.67777777777777776433.33577889999999988766.....556899999999999999999999987665 PP

>> Importin_rep_3  Importin 13 repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.0      0.56   3.4e+03      39      69 ..     209     239 ..     204     241 .. 0.89
   2 ?   -1.8   0.0      0.55   3.3e+03       4      27 ..     270     293 ..     267     297 .. 0.80
   3 !   12.8   0.1   1.6e-05     0.095      30      72 ..     945     987 ..     918     990 .. 0.78

  Alignments for each domain:
  == domain 1  score: -1.8 bits;  conditional E-value: 0.56
  Importin_rep_3  39 lLvetvLeaiggesprsllehladvLlaLnk 69 
                     +L+++v+e  g++s  + +e ++  L +L k
      KOO21832.1 209 QLLTAVVEHFGAGSGPEHAECVTQCLKCLEK 239
                     6999999999999999999999999999987 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 0.55
  Importin_rep_3   4 PEaptvKaaclFfveflsqceeip 27 
                     P +p v aa+  fve+ls ++ + 
      KOO21832.1 270 PVEPLVVAAADAFVELLSSNNTVL 293
                     667889999999*****9987765 PP

  == domain 3  score: 12.8 bits;  conditional E-value: 1.6e-05
  Importin_rep_3  30 kqvvqedGklLvetvLeaiggesprsllehladvLlaLnkhcf 72 
                       ++q+ Gk+L+ + L++ ++ sp +l++h  + + +L   c+
      KOO21832.1 945 VMCIQASGKQLLRECLSGLAAVSPDNLVDHQVELMRVLVEACP 987
                     348*********************************9999987 PP

>> IBN_N  Importin-beta N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0   6.7e-05       0.4      25      64 ..      51      82 ..      27      90 .. 0.83

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 6.7e-05
                TTSHHHHHHHHHHHHHHHHHHHGGSCCCHCGSXHHHHHHH CS
       IBN_N 25 seselevRqlAalyLknlitkhWsdeeekqslpseekeqI 64
                 +  + v++++a ++k ++ + W+      slp+  k+qI
  KOO21832.1 51 PD--EKVQFIGANMFKMKVCSEWH------SLPEGAKAQI 82
                33..46******************......*******998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1069 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       575  (0.0320709); expected 358.6 (0.02)
Passed bias filter:                      449  (0.0250432); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.73u 0.28s 00:00:01.01 Elapsed: 00:00:00.44
# Mc/sec: 7256.71
//
Query:       KOO21833.1  [L=152]
Description: transmembrane protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
      6e-15   55.8  13.1    6.5e-15   55.6  12.6    1.3  1  Transmemb_17  Predicted membrane protein


Domain annotation for each model (and alignments):
>> Transmemb_17  Predicted membrane protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.6  12.6   3.6e-19   6.5e-15       1     106 [.       5     113 ..       5     114 .. 0.92

  Alignments for each domain:
  == domain 1  score: 55.6 bits;  conditional E-value: 3.6e-19
  Transmemb_17   1 mlLylnsfysvlfflaelllliykgkllpypsnyllldvvllvlllllEvlRlylgykgNltekvpelalfllltlpvllplvyllllq...tyvlr 94 
                   m++ + + y ++++++  ll+ +k+  ++ p    ++  +++ ++lllE +Rl lgy gN +e+v +l +f++lt++ l+  vy+ll q    + l+
    KOO21833.1   5 MMIFFTGPYACVWAVSNQLLFYWKSRIFEVPLMVAVVSPMIFWVWLLLEPVRLLLGYVGNVRERVAWLGGFWVLTILQLICQVYFLLGQrwlWFNLP 101
                   8999*************************9999********************************************88888*****8843357889 PP

  Transmemb_17  95 levilniillal 106
                   +e + +++++++
    KOO21833.1 102 VENATSAFFVLF 113
                   999999888877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (152 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       600  (0.0334653); expected 358.6 (0.02)
Passed bias filter:                      289  (0.0161191); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.23s 00:00:00.62 Elapsed: 00:00:00.40
# Mc/sec: 1143.90
//
Query:       KOO21834.1  [L=84]
Description: hypothetical protein Ctob_004748 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (84 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       253  (0.0141112); expected 358.6 (0.02)
Passed bias filter:                      220  (0.0122706); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.24s 00:00:00.58 Elapsed: 00:00:00.38
# Mc/sec: 666.44
//
Query:       KOO21835.1  [L=212]
Description: calx-beta domain-containing protein, partial [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    6.2e-07   29.3  12.9      0.057   13.4   0.7    4.9  5  SBBP         Beta-propeller repeat
  ------ inclusion threshold ------
       0.14   12.1   8.1        6.3    6.7   0.2    3.2  3  Lactamase_B  Metallo-beta-lactamase superfamily
       0.58   10.1   9.4         20    5.1   0.2    3.4  3  ACP_syn_III  3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase 
        5.7    6.8   8.1         14    5.5   0.1    3.0  4  DUF3767      Protein of unknown function (DUF3767)


Domain annotation for each model (and alignments):
>> SBBP  Beta-propeller repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.3   0.1    0.0088        39      17      31 ..      23      37 ..      11      37 .. 0.95
   2 ?   -2.2   0.0         1   4.5e+03       9      20 ..      45      56 ..      43      56 .. 0.80
   3 !   13.4   0.7   1.3e-05     0.057       1      31 [.      71     100 ..      71     100 .. 0.92
   4 !   12.3   0.7   2.9e-05      0.13       1      31 [.     132     160 ..     132     160 .. 0.88
   5 !    4.5   0.0    0.0077        35       2      22 ..     193     211 ..     192     212 .] 0.87

  Alignments for each domain:
  == domain 1  score: 4.3 bits;  conditional E-value: 0.0088
        SBBP 17 gIavDsnGNiYvtGs 31
                gIa D  G + vtG+
  KOO21835.1 23 GIAYDGAGGALVTGY 37
                8*************8 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 1
        SBBP  9 pgastygngIav 20
                +++s++ +g+av
  KOO21835.1 45 GSTSLTSRGMAV 56
                478899999997 PP

  == domain 3  score: 13.4 bits;  conditional E-value: 1.3e-05
        SBBP   1 qWstqlGgpgastygngIavDsnGNiYvtGs 31 
                 +W  q  g +a t  ngIa D  G + vtG+
  KOO21835.1  71 DWAVQAAGESA-TDSNGIAYDGAGGALVTGD 100
                 5999*******.66****************5 PP

  == domain 4  score: 12.3 bits;  conditional E-value: 2.9e-05
        SBBP   1 qWstqlGgpgastygngIavDsnGNiYvtGs 31 
                 +W+ q G  g s++ +gIa D  G + vtG+
  KOO21835.1 132 DWVVQAG--GESVTSKGIAYDGAGGALVTGD 160
                 5999999..66678****************5 PP

  == domain 5  score: 4.5 bits;  conditional E-value: 0.0077
        SBBP   2 WstqlGgpgastygngIavDs 22 
                 W+ q G  g+s++++ Ia D 
  KOO21835.1 193 WVVQTG--GSSVSPRAIAHDG 211
                 999999..88889******95 PP

>> Lactamase_B  Metallo-beta-lactamase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.9   0.2     0.021        94     129     171 ..      16      58 ..      12      66 .. 0.82
   2 ?    6.7   0.2    0.0014       6.3     132     170 ..      82     120 ..      73     130 .. 0.86
   3 ?    6.4   0.3    0.0017       7.8     131     170 ..     141     180 ..     121     191 .. 0.83

  Alignments for each domain:
  == domain 1  score: 2.9 bits;  conditional E-value: 0.021
                  TSTSCCEEEEEETTCCEEEECTTTSSHHCCCCCC.TTCEEE-S CS
  Lactamase_B 129 pghghghgvveygggkvlftGDallagetgridltlrgaevrd 171
                   g++h++g+ ++g g+ l+tG +  +   g+++lt rg +v d
   KOO21835.1  16 VGSSHSCGIAYDGAGGALVTGYFRGNVLFGSTSLTSRGMAVTD 58 
                  5899*****************8877777777777777777666 PP

  == domain 2  score: 6.7 bits;  conditional E-value: 0.0014
                  SCCEEEEEETTCCEEEECTTTSSHHCCCCCC.TTCEEE- CS
  Lactamase_B 132 ghghgvveygggkvlftGDallagetgridltlrgaevr 170
                  + + g+ ++g g+ l+tGD+   ++ g+++lt rg+++ 
   KOO21835.1  82 TDSNGIAYDGAGGALVTGDFRGKASFGSTSLTSRGSTDA 120
                  6778899***********************998888775 PP

  == domain 3  score: 6.4 bits;  conditional E-value: 0.0017
                  TSCCEEEEEETTCCEEEECTTTSSHHCCCCCC.TTCEEE- CS
  Lactamase_B 131 hghghgvveygggkvlftGDallagetgridltlrgaevr 170
                  +  + g+ ++g g+ l+tGD+   ++ g+++lt rg+ + 
   KOO21835.1 141 SVTSKGIAYDGAGGALVTGDFRGKASFGSTSLTSRGSLDT 180
                  55678899*********************99988888765 PP

>> ACP_syn_III  3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.1   0.2    0.0046        20      36      64 ..       4      37 ..       3      53 .. 0.72
   2 ?    4.9   0.6    0.0051        23      37      79 ..      66     115 ..      49     116 .. 0.68
   3 ?    4.7   0.2    0.0059        26      51      79 ..     147     175 ..     122     176 .. 0.64

  Alignments for each domain:
  == domain 1  score: 5.1 bits;  conditional E-value: 0.0046
                 EGGGCS-TT.....THHHHTTB-EEEEEEEEEEE CS
  ACP_syn_III 36 tlskilDwk.....drstavlfGDGAgAvvleas 64
                 t s  +Dw+      + ++ +  DGAg+++++  
   KOO21835.1  4 TASGAIDWAvqavgSSHSCGIAYDGAGGALVTGY 37
                 5688899975555458999999********9976 PP

  == domain 2  score: 4.9 bits;  conditional E-value: 0.0051
                  GGGCS-TT.......THHHHTTB-EEEEEEEEEEESSSSCEEEEEEEEE- CS
  ACP_syn_III  37 lskilDwk.......drstavlfGDGAgAvvleaseeegarildselgsd 79 
                   s  +Dw+         ++  +  DGAg+++++ +   +a++ +++l s 
   KOO21835.1  66 ASGAIDWAvqaagesATDSNGIAYDGAGGALVTGDFRGKASFGSTSLTSR 115
                  566667753332221233344777**********9445556888888776 PP

  == domain 3  score: 4.7 bits;  conditional E-value: 0.0059
                  TB-EEEEEEEEEEESSSSCEEEEEEEEE- CS
  ACP_syn_III  51 lfGDGAgAvvleaseeegarildselgsd 79 
                  +  DGAg+++++ +   +a++ +++l s 
   KOO21835.1 147 IAYDGAGGALVTGDFRGKASFGSTSLTSR 175
                  667**********9445556888888776 PP

>> DUF3767  Protein of unknown function (DUF3767)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.1      0.78   3.5e+03      49      61 ..       4      16 ..       1      20 [. 0.74
   2 ?    5.2   0.2    0.0042        19      25      60 ..      38      76 ..      35      82 .. 0.79
   3 ?   -2.0   0.0      0.71   3.2e+03      37      59 ..     113     136 ..     101     141 .. 0.67
   4 ?    5.5   0.1    0.0032        14      31      60 ..     167     197 ..     161     202 .. 0.80

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 0.78
     DUF3767 49 nvakaaNWavgaf 61
                +++ a+ Wav a+
  KOO21835.1  4 TASGAIDWAVQAV 16
                5667999*99875 PP

  == domain 2  score: 5.2 bits;  conditional E-value: 0.0042
     DUF3767 25 aRdslltGigagavvGgl...rfvlkknvakaaNWavga 60
                +R  +l+G ++  + G+    +fv++ +++ a+ Wav a
  KOO21835.1 38 FRGNVLFGSTSLTSRGMAvtdTFVMHVTASGAIDWAVQA 76
                67778888877777776534479**************86 PP

  == domain 3  score: -2.0 bits;  conditional E-value: 0.71
     DUF3767  37 avvGgl.rfvlkknvakaaNWavg 59 
                  + G+   +v++ +++ a+ W v 
  KOO21835.1 113 TSRGSTdAYVMHVTASGAIDWVVQ 136
                 555555236888888889999886 PP

  == domain 4  score: 5.5 bits;  conditional E-value: 0.0032
     DUF3767  31 tGigagavvGgl.rfvlkknvakaaNWavga 60 
                 +G ++  + G+l +fv++ +++ a+NW v +
  KOO21835.1 167 FGSTSLTSRGSLdTFVMHVTASGAINWVVQT 197
                 666777888888579************9976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (212 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       332  (0.0185175); expected 358.6 (0.02)
Passed bias filter:                      202  (0.0112667); expected 358.6 (0.02)
Passed Vit filter:                        12  (0.000669307); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.43u 0.22s 00:00:00.65 Elapsed: 00:00:00.40
# Mc/sec: 1584.99
//
Query:       KOO21836.1  [L=332]
Description: hypothetical protein Ctob_002185 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (332 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       403  (0.0224776); expected 358.6 (0.02)
Passed bias filter:                      239  (0.0133304); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.42u 0.26s 00:00:00.68 Elapsed: 00:00:00.41
# Mc/sec: 2441.88
//
Query:       KOO21837.1  [L=381]
Description: extracellular response kinase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    5.5e-66  222.6   0.0    8.9e-66  221.9   0.0    1.3  1  Pkinase        Protein kinase domain
    9.7e-35  120.1   2.0    2.2e-34  118.9   0.9    2.0  3  Pkinase_Tyr    Protein tyrosine kinase
    0.00018   20.9   1.0      0.003   16.9   1.2    2.2  2  Kinase-like    Kinase-like
     0.0017   17.4   2.4     0.0043   16.1   2.4    1.6  1  Haspin_kinase  Haspin like kinase domain
  ------ inclusion threshold ------
      0.068   13.1   0.0       0.14   12.0   0.0    1.4  1  APH            Phosphotransferase enzyme family


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  221.9   0.0   2.5e-69   8.9e-66       1     263 [.      13     318 ..      13     319 .. 0.93

  Alignments for each domain:
  == domain 1  score: 221.9 bits;  conditional E-value: 2.5e-69
                 EEEEEEEEEESSEEEEEEEETTTTEEEEEEEEECHCHCHHHHHHHHHHHHHHHHHSCTTB--EEEEEEE..SSEEEEEEE--TTEBHHHHHHHHSS--H CS
     Pkinase   1 yekleklGeGsfGkVykaveketgkivAvKkikkekakkkkekkvlrEikilkklkhpnivrlyevfee..kdelylvleyveggeladllerkgslse 97 
                 +e+++klG+G++G V ka+ek+t+++vA+Kk+    +++++ +++ rE+ +l +++h+ni++l +v++   +++lylv+ey+e++ l+  ++   +l+e
  KOO21837.1  13 FEVQQKLGKGAYGIVWKALEKKTKEQVALKKVFDAFQNSTDAQRTYREVVYLLQMDHENIIKLNSVIKAdnDKDLYLVFEYMETD-LHATIR-ANILEE 109
                 6789**************************************************************99877899*********77.888886.5899** PP

                 HHHHHHHHHHHHHHHHHHHTTEE-SS-SGGGEEEETTTEEEE-SGTTSEESSSSCS.......BCTTTSCGGGS-HHHH.TTSCBSHHHHHHHHHHHHH CS
     Pkinase  98 eeakkiakqilegleylHskgiiHrDlKpeNiLidekgelKitDFGlakelesssk.......ltsfvgtseYlAPEvl.keneyskkvDvWslGvily 188
                  + + i++q +++l+y+Hs+++iHrD+Kp+N+L++++  +K++DFGla+ l+s  +       +t++v+t++Y+APE+l ++++y++k+D+WslG+i+ 
  KOO21837.1 110 IHKQYIMYQAFKALAYMHSASLIHRDMKPANLLLNSECLMKVADFGLARSLNSMLSsedrmdtMTDYVATRWYRAPEILvGSTQYGAKADLWSLGCIFG 208
                 ***********************************9999*************9888899********************9******************* PP

                 HHHHSS-STTTSSHHHHHHHHHHTHHHHHHHCT.SHH...HHHTTS.........................................-HHHHHHHHHHT CS
     Pkinase 189 elltgkppfsgekgkekvekeldqlekilkilg.etkeklpeasei.........................................seeakdllkkll 245
                 e+++ kp+f    g++     l+qle i ++lg ++ e+++  ++                                          s++a+dll + l
  KOO21837.1 209 EMINAKPVFG---GTS----TLNQLEVISELLGhPSPEQVASLKSTfattmyenvsgsgsesgseggiaalpekerkarfvtkfptaSPDAIDLLMSSL 300
                 **********...555....78888889999986333344444444677778899******************************************** PP

                 -SSGCCSTTHHHHHTSGG CS
     Pkinase 246 kkdpkkRltaeellqhpy 263
                  +dp+kR++ ee + hpy
  KOO21837.1 301 MYDPEKRISPEEGMVHPY 318
                 *****************9 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  118.9   0.9   6.2e-38   2.2e-34       2     220 ..      14     231 ..      13     255 .. 0.83
   2 ?   -1.1   0.0      0.26   9.2e+02     220     251 ..     278     309 ..     240     312 .. 0.57
   3 ?   -2.0   0.0       0.5   1.8e+03      95     116 ..     357     378 ..     341     379 .. 0.78

  Alignments for each domain:
  == domain 1  score: 118.9 bits;  conditional E-value: 6.2e-38
                  EEEEEEEEESSEEEEEEEEETTTTSSEEEEEEEEE.STTSSHHHHHHHHHHHHHHHTS-BTTB--EEEEEE..SSSSEEEEEE--TTEBHHHHHHHTC CS
  Pkinase_Tyr   2 elgkklGeGafGkVvegtlkgekekkevkVavKtl.keeateeekeelleeakimkklkhpnivkllgvct..keepllivteyvkgGdLlkfLrkke 96 
                  e+++klG+Ga+G V+++  k    k++++Va+K++ ++ +++++ ++ ++e+  + +++h+ni+kl  v+   +++ l++v+ey++  dL+  +r++ 
   KOO21837.1  14 EVQQKLGKGAYGIVWKALEK----KTKEQVALKKVfDAFQNSTDAQRTYREVVYLLQMDHENIIKLNSVIKadNDKDLYLVFEYMET-DLHATIRAN- 105
                  6799*************999....9999****999455666667999************************877788********86.9*******9. PP

                  TTTSBHHHHHHHHHHHHHHHHHHHHTTEEEST-SGGGEEEEETTEEEE-STTTHEETTTSSEE...EETTSSTSGGGGS.-HHHHHHSE.EEHHHHHH CS
  Pkinase_Tyr  97 kekltlkdllsfalqvAkGmeyLeskklvHrdlaarNvLlsenkvvkisDfGLardiekddey...vkkeeaklpvkWm.apEslkekk.ftsksDvW 189
                     l+  ++  +++q  k+++y++s +l+Hrd+   N Ll+++ ++k++DfGLar+++++ +     ++ +  +  +W+ apE+l  ++ +  k+D W
   KOO21837.1 106 --ILEEIHKQYIMYQAFKALAYMHSASLIHRDMKPANLLLNSECLMKVADFGLARSLNSMLSSedrMDTMTDYVATRWYrAPEILVGSTqYGAKADLW 201
                  ..899999999*********************************************955433322255566679999998***9986655******** PP

                  HHHHHHHHHHTTSSGTTTTSHHHHHHHHHHT CS
  Pkinase_Tyr 190 sfGvllwEiftlgespypglkneevleklke 220
                  s G +  E+++ ++  + g ++ + le ++e
   KOO21837.1 202 SLGCIFGEMIN-AKPVFGGTSTLNQLEVISE 231
                  *********98.5544555555555555554 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 0.26
                  TTEES-BBTTSBHHHHHHHHHHT-SSGGGS-- CS
  Pkinase_Tyr 220 egkrlekpekcpeelyelmkkcweedpeeRpt 251
                  + + ++k  +++++  +l+++++ +dpe+R +
   KOO21837.1 278 KARFVTKFPTASPDAIDLLMSSLMYDPEKRIS 309
                  33334455566777778888899999999975 PP

  == domain 3  score: -2.0 bits;  conditional E-value: 0.5
                  TCTTTSBHHHHHHHHHHHHHHH CS
  Pkinase_Tyr  95 kekekltlkdllsfalqvAkGm 116
                  ++++kl++k    + +q++++m
   KOO21837.1 357 NDNKKLETKMYRTMLHQICDAM 378
                  3567889999999999999998 PP

>> Kinase-like  Kinase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.0   0.2     0.029     1e+02      11      67 ..      10      66 ..       5      80 .. 0.83
   2 !   16.9   1.2   8.4e-07     0.003     119     199 ..      82     164 ..      29     248 .. 0.68

  Alignments for each domain:
  == domain 1  score: 2.0 bits;  conditional E-value: 0.029
  Kinase-like 11 ertlvrgellkkgdrsvvfevkdqetgeplavkvfllpseaskkdlerlkeqelair 67
                  r + +++ l+kg  ++v+++ +++t+e++a+k      ++s  +   ++e + +++
   KOO21837.1 10 SRRFEVQQKLGKGAYGIVWKALEKKTKEQVALKKVFDAFQNSTDAQRTYREVVYLLQ 66
                 56777889999*********************9887777888888888887776665 PP

  == domain 2  score: 16.9 bits;  conditional E-value: 8.4e-07
  Kinase-like 119 aasvdleilnkvlqkrset...hkkletiarlllTlqlirlaanLqakglvhgkftvdnllldekgglmlggftaLvragtkvv 199
                  +   dl ++++ ++        ++ le+i ++++  q+ +  a++++  l+h ++++ nlll+ +  +++ +f+ L r  +++ 
   KOO21837.1  82 DNDKDLYLVFEYMETDLHAtirANILEEIHKQYIMYQAFKALAYMHSASLIHRDMKPANLLLNSECLMKVADFG-LARSLNSML 164
                  3444555555555543333234778999********************************************97.444444444 PP

>> Haspin_kinase  Haspin like kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   2.4   1.2e-06    0.0043     157     257 ..      55     160 ..       4     170 .. 0.81

  Alignments for each domain:
  == domain 1  score: 16.1 bits;  conditional E-value: 1.2e-06
  Haspin_kinase 157 kgtypglllllq...dkvlkekpdfyseqqlflvlllkdkGtdLeev.klkswkqals..ifwqivkiLyvaEtkfeFEHRdLhldniLvdknlnv 246
                    + ty ++++llq   ++++k +  ++ +++  l+l+++++ tdL    + +  +++ +  i++q  k L+   ++  + HRd++  n L++++  +
     KOO21837.1  55 QRTYREVVYLLQmdhENIIKLNSVIKADNDKDLYLVFEYMETDLHATiRANILEEIHKqyIMYQAFKALAYMHSA-SLIHRDMKPANLLLNSECLM 149
                    55666666665422267888888889999***************8765777777776555*********999765.789***************** PP

  Haspin_kinase 247 tlidlklsRle 257
                     + d+ l+R  
     KOO21837.1 150 KVADFGLARSL 160
                    *********75 PP

>> APH  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0     4e-05      0.14     153     196 ..     117     157 ..      73     159 .. 0.72

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 4e-05
                 HHHHHHH--SSS-EEEE-SS-SGGGEEEC..TTEEEEE---TT- CS
         APH 153 laalaallpgelptvllHgDlhpgNllvdpddgrvtGviDfeda 196
                 ++a++al+    +++l+H+D +p Nll++     +  v Df++a
  KOO21837.1 117 YQAFKALAYM-HSASLIHRDMKPANLLLN--SECLMKVADFGLA 157
                 4555555554.789**************9..4444457777766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (381 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       758  (0.0422779); expected 358.6 (0.02)
Passed bias filter:                      455  (0.0253779); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.53u 0.26s 00:00:00.79 Elapsed: 00:00:00.42
# Mc/sec: 2742.96
//
Query:       KOO21838.1  [L=220]
Description: hypoxanthine-guanine phosphoribosyltransferase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    5.6e-21   74.7   0.0      7e-21   74.4   0.0    1.1  1  Pribosyltran  Phosphoribosyl transferase domain
  ------ inclusion threshold ------
      0.056   12.9   0.0      0.085   12.3   0.0    1.2  1  PRTase_2      Phosphoribosyl transferase
      0.079   12.4   0.0      0.099   12.1   0.0    1.3  1  UPRTase       Uracil phosphoribosyltransferase


Domain annotation for each model (and alignments):
>> Pribosyltran  Phosphoribosyl transferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   74.4   0.0   1.2e-24     7e-21      11     158 ..      39     197 ..      33     198 .. 0.87

  Alignments for each domain:
  == domain 1  score: 74.4 bits;  conditional E-value: 1.2e-24
                   EEEEEEETTEEEEEE....--GGGEEEEEEETTTHHHHHHHHHHS...........TT-EE-EEEEEE-TTT--EE........EE----TTSEEEE CS
  Pribosyltran  11 ildavarlaaeilee....yngkpdvvvgiargGvpfakiladeL...........evplayvrkvkyrpdgseeaargssdesrlledpagkkVli 92 
                   i d+++rla +i +       g + + +++++gG  f+++l ++L            + ++++r+++y++  s++ ++  ++ + +l++++g+ +l+
    KOO21838.1  39 IQDRIDRLANDICKAydfhGSGARLHMLCVLKGGHQFFSDLCNALkkltlvgvkepPLTFDFIRVKSYHNTESSGDITIETVGI-DLPSLKGRNILL 134
                   5567777777777774444557788**************************9997777799*******9887776665555555.************ PP

                   E-SEESSSHHHHHHHHHHHCC-BSEEEEEEEEE-HHHHHHHHHH-TTS.....EEEEEEE-SEE-T CS
  Pribosyltran  93 VDDildtGgTllaalelLkekgpeevriavlvdkpateeevdknakrvfslspdnfvavvgfelds 158
                   V+Di+dtG T+ + +  L +++p++vr+a+l++k++ + +    ++++fs+    +++vvg++ld+
    KOO21838.1 135 VEDIIDTGATMSKLVPYLQSYEPTSVRVATLLKKRTPKSNGFEADFTGFSIP---DKFVVGYCLDY 197
                   ****************************************9999*****999...*******9997 PP

>> PRTase_2  Phosphoribosyl transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   1.4e-05     0.085     121     166 ..     129     173 ..     123     184 .. 0.85

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 1.4e-05
    PRTase_2 121 akelvLvDDEistGktalnliralqeklprkryvvvslvdwrseed 166
                  ++++Lv D i tG t+ +l+  lq+  p +++ v++l+  r++++
  KOO21838.1 129 GRNILLVEDIIDTGATMSKLVPYLQSYEP-TSVRVATLLKKRTPKS 173
                 5789******************9998877.5789999999998874 PP

>> UPRTase  Uracil phosphoribosyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   1.7e-05     0.099     116     161 ..     125     167 ..      60     177 .. 0.87

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 1.7e-05
     UPRTase 116 PkkiaertvlllDpviaTGgsaaaaiqlLkergvgeekIlvlsvla 161
                 P+ ++ r++ll++ +i TG+++ + +  L++   +  +++v+++l 
  KOO21838.1 125 PS-LKGRNILLVEDIIDTGATMSKLVPYLQS--YEPTSVRVATLLK 167
                 43.57889***********************..7788999998886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (220 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       264  (0.0147247); expected 358.6 (0.02)
Passed bias filter:                      258  (0.0143901); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.38u 0.24s 00:00:00.62 Elapsed: 00:00:00.38
# Mc/sec: 1714.86
//
Query:       KOO21839.1  [L=459]
Description: hypothetical protein Ctob_002191 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (459 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2677  (0.149311); expected 358.6 (0.02)
Passed bias filter:                      452  (0.0252106); expected 358.6 (0.02)
Passed Vit filter:                        80  (0.00446204); expected 17.9 (0.001)
Passed Fwd filter:                        19  (0.00105974); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.88u 0.36s 00:00:01.24 Elapsed: 00:00:00.52
# Mc/sec: 2669.32
//
Query:       KOO21840.1  [L=285]
Description: pili assembly chaperone [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.4e-09   37.4   0.0      9e-05   22.5   0.0    3.0  2  PAP_fibrillin  PAP_fibrillin


Domain annotation for each model (and alignments):
>> PAP_fibrillin  PAP_fibrillin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.7   0.0   4.2e-05      0.75      20      61 ..      47      85 ..      32     100 .. 0.83
   2 !   22.5   0.0     5e-09     9e-05      76     196 ..     140     278 ..     127     280 .. 0.58

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 4.2e-05
  PAP_fibrillin 20 assddraeieelvkklealnptpaplesldlLdGkWrLlYtt 61
                   a +++r++ + lv +l  +++++ap+ +   L+G+W+L+++ 
     KOO21840.1 47 AYQEKRDDMSLLVSQL--AERQSAPVTA-AALNGEWELVFSE 85
                   5577899999999999..5788999977.99*********85 PP

  == domain 2  score: 22.5 bits;  conditional E-value: 5e-09
  PAP_fibrillin  76 llkvgeiyQtIdvenksvqNsve.....lsg.........lpllegsvsvaakfevaspk...rvelkFeravlklkkl...............lk 139
                    l +vg++ QtIdve+ +++ s       l+          lp + g v ++a++ v+++    r+el                           + 
     KOO21840.1 140 LSTVGRVAQTIDVEKGRFESSFDttifgLTVipllgwfklLPTFGGRVVTEADAVVLEDDgtlRMEL-----------QrtrvitapgvpriplVD 224
                    5678888888888888887776644334222223334444555555555555555544321113333...........133333444447777755 PP

  PAP_fibrillin 140 glltslqdtasniaraissqlpikfrlsgeeakgwLeitYlDedLRIsRGdeGslfv 196
                    g+      ++s++ +   ++     ++ g+  +   +++Y+De++RIsR+  G +f+
     KOO21840.1 225 GIFMDRWYPVSSVWKLLPWN---GGPFEGRAPTCSVQTVYVDEQMRISRDGAGAVFI 278
                    55555555555554442222...2345678888999********************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (285 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       241  (0.0134419); expected 358.6 (0.02)
Passed bias filter:                      232  (0.0129399); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.25s 00:00:00.68 Elapsed: 00:00:00.41
# Mc/sec: 2076.58
//
Query:       KOO21841.1  [L=75]
Description: hypothetical protein Ctob_002188 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (75 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       201  (0.0112109); expected 358.6 (0.02)
Passed bias filter:                      179  (0.00998383); expected 358.6 (0.02)
Passed Vit filter:                         7  (0.000390429); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.26s 00:00:00.61 Elapsed: 00:00:00.41
# Mc/sec: 546.64
//
Query:       KOO21842.1  [L=430]
Description: hypothetical protein Ctob_002183, partial [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.13   11.1   5.1        0.2   10.5   5.1    1.2  1  DUF812    Protein of unknown function (DUF812)


Domain annotation for each model (and alignments):
>> DUF812  Protein of unknown function (DUF812)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   5.1   1.1e-05       0.2     233     370 ..     265     406 ..     169     415 .. 0.53

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 1.1e-05
      DUF812 233 asrlteeeykkrk....keklqkrlaeqlrkaalkseeaessasksksdlaellsefseksetdslktkgsrfthaekl...qftkeelakkaeteeel 324
                 a+r  ++   + +    k++l++ la++ r +  +  + + s+ ++++ l +   ++  ++++ ++++  + f++++++    f +   a +   ee++
  KOO21842.1 265 ARRTVDNAAAAADrasvKRSLKRSLAKWQRVSSES-AALTASRAPREHMLCDEPATAPAAAAEATMADAPAAFAREQAAeemAFVDP-EALEPAAEEDA 361
                 22233333333330000333333333333333222.222222222222222323333444444444444555555444432233222.12444555555 PP

      DUF812 325 kkkreeeleelqeqieeleskieeleeeikklessikqveeeleee 370
                   ++  el+++++++ e ++++e  e+e ++l+ +++q++e+l++ 
  KOO21842.1 362 -SEEPVELAAMEQEVLEQQQRAEVAESESAALRLEVEQLTEQLQQA 406
                 .566679***********************************9985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (430 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1140  (0.0635841); expected 358.6 (0.02)
Passed bias filter:                      356  (0.0198561); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.51u 0.23s 00:00:00.74 Elapsed: 00:00:00.39
# Mc/sec: 3285.14
//
Query:       KOO21843.1  [L=321]
Description: hypothetical protein Ctob_002187 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.7e-12   47.0   0.1    5.7e-12   45.9   0.1    1.6  1  EF-hand_7  EF-hand domain pair
    2.8e-12   45.5   0.7    5.3e-05   22.8   0.2    2.5  2  EF-hand_6  EF-hand domain
    4.5e-12   44.6   3.6    4.3e-06   25.9   1.4    2.4  2  EF-hand_1  EF hand
    3.7e-11   42.7   1.8    1.6e-06   27.8   0.2    2.5  2  EF-hand_8  EF-hand domain pair
    5.2e-08   32.0   3.2     0.0017   17.7   0.5    2.5  2  EF-hand_5  EF hand


Domain annotation for each model (and alignments):
>> EF-hand_7  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.9   0.1   1.6e-15   5.7e-12       4      70 ..     186     246 ..     183     247 .. 0.94

  Alignments for each domain:
  == domain 1  score: 45.9 bits;  conditional E-value: 1.6e-15
   EF-hand_7   4 lkeaFkelDtdgdgyldkeellrllrkifqgagegsklsdeelellfkefDtdkdGvisfdEFlkly 70 
                 + e Fke Dtdg+g +dk el++ +       g g +++ +e++ lf++fD+d++G+i ++EF+k+ 
  KOO21843.1 186 VLELFKEWDTDGNGAVDKMELRKGIA------GLGYSVPNKEIDFLFDCFDKDGSGEIAYSEFKKML 246
                 6689******************9999......*******************************9985 PP

>> EF-hand_6  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.6   0.0   7.4e-08   0.00027       3      27 ..     187     211 ..     185     214 .. 0.88
   2 !   22.8   0.2   1.5e-08   5.3e-05       2      27 ..     222     247 ..     221     255 .. 0.90

  Alignments for each domain:
  == domain 1  score: 20.6 bits;  conditional E-value: 7.4e-08
   EF-hand_6   3 reaFklfDkdgdGkidaeElrkalr 27 
                  e+Fk++D+dg+G +d+ Elrk + 
  KOO21843.1 187 LELFKEWDTDGNGAVDKMELRKGIA 211
                 699******************9875 PP

  == domain 2  score: 22.8 bits;  conditional E-value: 1.5e-08
   EF-hand_6   2 lreaFklfDkdgdGkidaeElrkalr 27 
                 ++ +F+ fDkdg+G+i ++E++k+l+
  KOO21843.1 222 IDFLFDCFDKDGSGEIAYSEFKKMLS 247
                 6789*********************8 PP

>> EF-hand_1  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.8   0.0   2.3e-07   0.00082       3      27 ..     187     211 ..     185     213 .. 0.89
   2 !   25.9   1.4   1.2e-09   4.3e-06       1      27 [.     221     247 ..     221     249 .. 0.94

  Alignments for each domain:
  == domain 1  score: 18.8 bits;  conditional E-value: 2.3e-07
                 HHHHHHHTTTSSSEEEHHHHHHHHH CS
   EF-hand_1   3 keiFrefDkDgdGkIdfeEfkellk 27 
                  e+F+e D+Dg+G +d+ E+++ ++
  KOO21843.1 187 LELFKEWDTDGNGAVDKMELRKGIA 211
                 689*****************99875 PP

  == domain 2  score: 25.9 bits;  conditional E-value: 1.2e-09
                 HHHHHHHHHTTTSSSEEEHHHHHHHHH CS
   EF-hand_1   1 elkeiFrefDkDgdGkIdfeEfkellk 27 
                 e++ +F+ fDkDg+G I ++Efk++l+
  KOO21843.1 221 EIDFLFDCFDKDGSGEIAYSEFKKMLS 247
                 7999*********************97 PP

>> EF-hand_8  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.1   4.4e-06     0.016      28      48 ..     186     206 ..     172     209 .. 0.85
   2 !   27.8   0.2   4.6e-10   1.6e-06      10      52 ..     206     246 ..     205     249 .. 0.84

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 4.4e-06
   EF-hand_8  28 vdilfrefDtdgdGkisfeEF 48 
                 v +lf+e Dtdg+G+++++E 
  KOO21843.1 186 VLELFKEWDTDGNGAVDKMEL 206
                 5689***************96 PP

  == domain 2  score: 27.8 bits;  conditional E-value: 4.6e-10
   EF-hand_8  10 lrrilrilglkk...glseeevdilfrefDtdgdGkisfeEFcvll 52 
                 lr+     g+++   ++ ++e+d lf++fD dg+G i + EF  +l
  KOO21843.1 206 LRK-----GIAGlgySVPNKEIDFLFDCFDKDGSGEIAYSEFKKML 246
                 666.....55555556***************************997 PP

>> EF-hand_5  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.1   0.1   6.7e-06     0.024       4      23 ..     189     208 ..     187     210 .. 0.90
   2 !   17.7   0.5   4.8e-07    0.0017       4      24 ..     225     245 ..     222     246 .. 0.90

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 6.7e-06
                 HHHHH-SS-SSCE-HHHHHH CS
   EF-hand_5   4 tFqaiDlNgDGkIskeELkt 23 
                 +F++ D++g G ++k EL++
  KOO21843.1 189 LFKEWDTDGNGAVDKMELRK 208
                 69999*************97 PP

  == domain 2  score: 17.7 bits;  conditional E-value: 4.8e-07
                 HHHHH-SS-SSCE-HHHHHHH CS
   EF-hand_5   4 tFqaiDlNgDGkIskeELktl 24 
                 +F+++D++g+G I  +E+k++
  KOO21843.1 225 LFDCFDKDGSGEIAYSEFKKM 245
                 7*****************997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (321 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       749  (0.0417759); expected 358.6 (0.02)
Passed bias filter:                      448  (0.0249875); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.49u 0.24s 00:00:00.73 Elapsed: 00:00:00.41
# Mc/sec: 2324.11
//
Query:       KOO21844.1  [L=542]
Description: mcak-like kinesin [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    2.1e-61  207.7   0.0    2.7e-61  207.3   0.0    1.1  1  Kinesin      Kinesin motor domain
    1.1e-10   41.6   0.0    1.6e-10   41.1   0.0    1.3  1  Microtub_bd  Microtubule binding
  ------ inclusion threshold ------
      0.011   16.1   0.0      0.036   14.4   0.0    1.9  2  AAA_16       AAA ATPase domain
      0.077   12.8   0.0       0.13   12.0   0.0    1.3  1  Bac_DnaA     Bacterial dnaA  protein
      0.078   13.1   0.0       0.15   12.1   0.0    1.4  1  DUF87        Helicase HerA, central domain
      0.084   12.8   0.1        6.7    6.8   0.0    2.5  2  SAM_PNT      Sterile alpha motif (SAM)/Pointed domain
      0.092   13.0   0.0       0.21   11.9   0.0    1.6  1  AAA_22       AAA domain
       0.24   10.5   0.1        0.4    9.8   0.1    1.2  1  PIF1         PIF1-like helicase


Domain annotation for each model (and alignments):
>> Kinesin  Kinesin motor domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  207.3   0.0   1.2e-64   2.7e-61       2     328 ..      44     372 ..      43     376 .. 0.86

  Alignments for each domain:
  == domain 1  score: 207.3 bits;  conditional E-value: 1.2e-64
                 E-SSSHHHHTTTTEBCEEEEC..........TCTCEEEEEEEEECTTSCEEEEESEEEETTS-HHHHHHHHHHHHHHHHHTTSEEEEEEEESTTSSHHH CS
     Kinesin   2 vRplnekekeeeeeeevevee..........ekkeeekkskkenkeeeekkfkFdkvfdeeatqeevyeetakplvesvleGynatifaYGqtgsGKTy 90 
                 +Rp  e+e +e  e+  +v +          ++    k s +   + e+++f Fd+ f++ at+++++  + +plv + + G  + ifaYGqtgsGKT+
  KOO21844.1  44 MRPAFETELAEGGENFECVLKttcteegaeeATVLLPKISLTGIPKIERSSFLFDHTFGPGATNDDIFAALGRPLVAKTFAGEVGVIFAYGQTGSGKTF 142
                 56666666555555544444445555554332223334444556788999************************************************* PP

                 HHTBCTTTSBSHHHHHHHHHHHHHHHCTTTHEEEEEEEEEEEEEETTEEEETTSTTTTSTSSEBEEEECTTSCCEEETTS--EEESSHHHHHHHHHHHH CS
     Kinesin  91 TmegkeeeeeGiipraleelFesikkekeekekefsvkvsylEiYneeiyDLLeskkskkkkklkiredskkgevyvkgltevevksaeevlellekge 189
                 Tm+        i+ r+++elF s  +  +       v+ sylE+   +++D L+ +   k  +++i e  + g+v  ++l++++v+sa  + +l+e+++
  KOO21844.1 143 TMSA-------IMDRVVTELFPSDGTAPR------AVRFSYLEVLGSSVHDCLDAS---KLADVQIGEALD-GRVLTRNLSSHDVDSAAALERLIEVAK 224
                 ***7.......89********99877554......6******************99...566799***999.56************************* PP

                 HHHTSTTSSCTSHHCCSEEEEEEEEEEEETTTTTCEEEEEEEEEEEEEEECCCHHHHSSTCHHHHHHHHHHHHHHHHHHHHHHHHHHT.....CCTSTS CS
     Kinesin 190 knrkvaetklneeSSRSHavftitleqknlkeeteekvkisklnLvDLAGsErasktgaaegerlkEaaniNkSLlaLgrvisaLaek.....kkskhi 283
                 ++r++a t+ n++SSRSH v  +t+ q   + ++ e+ +++ l  +DLAGsEra+++  ++++r++E++++N SL+aL+++i+a +        ++ ++
  KOO21844.1 225 SRRATAPTERNATSSRSHGVGILTVAQPGFAIDDVEAPRAGVLMVIDLAGSERAADSMGHDKKRMDETKAVNLSLMALKDCIRARTLAsiaaaGEKVFV 323
                 ****************************9998877889********************999*********************99776667888999*** PP

                 CGGGSHHHHHTGGGHSSS....SEEEEEEEE-TBGGGHHHHHHHHHHHH CS
     Kinesin 284 pYRdSkLTrlLqdsLgGn....sktlmivtvspssenleetlstlkfae 328
                 pYR  kLT l++d ++ +    + t+++ +vsp ++++ +tl+tl +a+
  KOO21844.1 324 PYRRTKLTLLMKDVFDIScsrlCSTVVLSCVSPLAKDAPHTLNTLGYAA 372
                 *************998652222689**********************97 PP

>> Microtub_bd  Microtubule binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.1   0.0   7.3e-14   1.6e-10      43     114 ..      81     152 ..      40     182 .. 0.76

  Alignments for each domain:
  == domain 1  score: 41.1 bits;  conditional E-value: 7.3e-14
                  T........TTTEEEE-SEEEECTTHCCCCCCCC.HHHHHHHHTT--EEEEEEES................ST-HCHH CS
  Microtub_bd  43 e.....eekkkkkefsFdrvfeseseqeevfeei.sqlvqsaldgynvcifaygqTGsGKtyTmegeeeeagmiprav 114
                  +       k ++ +f Fd+ f + ++++++f  + + lv   + g    ifaygqTGsGKt+Tm++       ++r+v
   KOO21844.1  81 KisltgIPKIERSSFLFDHTFGPGATNDDIFAALgRPLVAKTFAGEVGVIFAYGQTGSGKTFTMSA------IMDRVV 152
                  2555555678899*******************984689**************************98......444444 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.4   0.0   1.6e-05     0.036      10     116 ..     112     234 ..     108     282 .. 0.64
   2 ?   -3.2   0.0       4.1   9.2e+03      70     107 ..     300     353 ..     286     369 .. 0.60

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 1.6e-05
      AAA_16  10 eqL.lsalervrsgrpelvllsGesGvGKsslvrellralekd...............ggif..lrgkcdql..esaipy..salaqalareellrqll 86 
                 ++L + ++ ++ +g+ ++++ +G+ G+GK+  + ++++++ ++               +  +  l    +++   s+  +  +++ +al+ + l r l 
  KOO21844.1 112 AALgRPLVAKTFAGEVGVIFAYGQTGSGKTFTMSAIMDRVVTElfpsdgtapravrfsY--LevLGSSVHDCldASK--LadVQIGEALDGRVLTRNLS 206
                 5565677889999*99**********************999997777666665442221..1312222233332222..23255777777766666666 PP

      AAA_16  87 deaesaeleawrekleealaavpelagaea 116
                 ++  + + +a+ e+l e++++ ++ a+ e+
  KOO21844.1 207 SH--DVDSAAALERLIEVAKSRRATAPTER 234
                 66..33455555555666554444444444 PP

  == domain 2  score: -3.2 bits;  conditional E-value: 4.1
      AAA_16  70 salaqalareellrqlldeaesaeleawrekleeala.................a 107
                  al +++ r + l+ ++++ e+  +++ r+kl+  ++                 +
  KOO21844.1 300 MALKDCI-RARTLASIAAAGEKVFVPYRRTKLTLLMKdvfdiscsrlcstvvlsC 353
                 4566777.55777777777777667777766666666555555555555555554 PP

>> Bac_DnaA  Bacterial dnaA  protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   5.9e-05      0.13       5      59 ..      95     152 ..      92     159 .. 0.81

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 5.9e-05
                 -SGG.G----TTTHHHHHH..HHHHHHSTTT.S--EEEE-SSSSSHHHHHHHHHHHHH CS
    Bac_DnaA   5 ytFe.tFviGasnrlAlaa..alkvaeapgkkynPlfiygevGlGktHLlkaignevl 59 
                 + F+ tF  Ga+n   +aa     va++ + +   +f yg++G Gkt  + ai  +v+
  KOO21844.1  95 FLFDhTFGPGATNDDIFAAlgRPLVAKTFAGEVGVIFAYGQTGSGKTFTMSAIMDRVV 152
                 778757999*999976666114569**99999*********************88776 PP

>> DUF87  Helicase HerA, central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   6.7e-05      0.15      30      49 ..     134     153 ..     130     161 .. 0.89

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 6.7e-05
       DUF87  30 gsTGsGKSntvavLleelle 49 
                 g+TGsGK++t++ ++++++ 
  KOO21844.1 134 GQTGSGKTFTMSAIMDRVVT 153
                 9**************99884 PP

>> SAM_PNT  Sterile alpha motif (SAM)/Pointed domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.3   0.0     0.035        79      15      35 ..     391     411 ..     382     423 .. 0.80
   2 ?    6.8   0.0     0.003       6.7      48      67 ..     440     459 ..     428     469 .. 0.86

  Alignments for each domain:
  == domain 1  score: 3.3 bits;  conditional E-value: 0.035
                 SSGGG--HHHHHHHHHHHHHH CS
     SAM_PNT  15 adPqeWtkehVlewlewavke 35 
                  dP  W +e+ + wl  + k 
  KOO21844.1 391 RDPALWAHEKAVTWLAATAKA 411
                 59*************987776 PP

  == domain 2  score: 6.8 bits;  conditional E-value: 0.003
                 S-HHHHHHS-HHHHHHHSCH CS
     SAM_PNT  48 msGkeLcsltkeefleaapl 67 
                 msG eLc +++ e+  ++++
  KOO21844.1 440 MSGLELCRMAEAELHLRIKK 459
                 9*************998875 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   9.2e-05      0.21       6      43 ..     128     166 ..     125     230 .. 0.77

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 9.2e-05
      AAA_22   6 gilvvtGesGtGKTtllrrlleqldeeakaee.erpevv 43 
                 g+++ +G++G+GKT+++  ++++ + e ++ +   p+ v
  KOO21844.1 128 GVIFAYGQTGSGKTFTMSAIMDRVVTELFPSDgTAPRAV 166
                 67899***************9998777666666333333 PP

>> PIF1  PIF1-like helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   0.1   0.00018       0.4      16      47 ..     121     152 ..     113     156 .. 0.84

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.00018
                 ....HCTS-EEEEESTTSSCHHHHHHHHHHCH CS
        PIF1  16 avlnekgklfFvtGsgGtgKtflwkallkklr 47 
                  +++ + +++F +G+ G+gKtf   a++  + 
  KOO21844.1 121 KTFAGEVGVIFAYGQTGSGKTFTMSAIMDRVV 152
                 556677899****************9998775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (542 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       533  (0.0297284); expected 358.6 (0.02)
Passed bias filter:                      367  (0.0204696); expected 358.6 (0.02)
Passed Vit filter:                        55  (0.00306766); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.53u 0.29s 00:00:00.82 Elapsed: 00:00:00.42
# Mc/sec: 3873.15
//
Query:       KOO21845.1  [L=125]
Description: hypothetical protein Ctob_003430 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
  ------ inclusion threshold ------
      0.014   15.1   0.1      0.021   14.6   0.1    1.2  1  DUF713          Protein of unknown function (DUF713)
      0.019   14.4   4.2      0.022   14.2   4.2    1.2  1  DUF4349         Domain of unknown function (DUF4349)
      0.034   14.2   3.9      0.058   13.4   3.9    1.5  1  FlxA            FlxA-like protein
       0.04   13.8   3.0      0.056   13.3   3.0    1.2  1  Phage_Mu_Gam    Bacteriophage Mu Gam like protein
      0.047   14.1   3.4      0.065   13.6   3.4    1.2  1  YlqD            YlqD protein
      0.056   14.2   1.2      0.081   13.7   1.0    1.5  1  Complex1_LYR_2  Complex1_LYR-like
       0.28   10.0   4.0       0.27   10.1   4.0    1.1  1  Fmp27_WPPW      RNA pol II promoter Fmp27 protein domain
        0.3   11.8   7.1        1.1    9.9   1.8    2.4  2  SlyX            SlyX
        1.7    7.8   8.6        3.8    6.7   8.6    1.5  1  VSG_B           Trypanosomal VSG domain
        2.4    8.8  10.8        1.8    9.2   4.3    2.2  2  DUF883          Bacterial protein of unknown function (DUF883
          3    7.1   9.7        3.7    6.8   9.7    1.2  1  DUF4407         Domain of unknown function (DUF4407)
        3.8    7.9  10.0          1    9.7   2.6    2.5  3  HalX            HalX domain


Domain annotation for each model (and alignments):
>> DUF713  Protein of unknown function (DUF713)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.6   0.1   1.4e-05     0.021      31      92 ..      44     105 ..      41     110 .. 0.92

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 1.4e-05
      DUF713  31 qewsdwlkklrepivklknrfsdfeeeikksdkeekklekedleelqselsnLakkvlsayn 92 
                 +e    +k+ +++i+++++r  + e+ +k+++      ++e+++el++e+s+L++   sa +
  KOO21845.1  44 EELTAAIKDAQRQIAEVVTRVKRYEKLLKRQTGPAAARTQEQVNELRTEISMLQERARSAAE 105
                 677889**************************99999999**************99988865 PP

>> DUF4349  Domain of unknown function (DUF4349)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   4.2   1.5e-05     0.022      76     142 ..      38     103 ..       5     111 .. 0.87

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 1.5e-05
     DUF4349  76 srstsaeDVTeqyvDleaRlkaleasedrllallekaksvedlleiereLsevqaeieslegqlryL 142
                 s   + e++T+ + D +++++   + ++r+++ll++++  +   + +++++e ++ei  l+ + r+ 
  KOO21845.1  38 SDRLRREELTAAIKDAQRQIAEVVTRVKRYEKLLKRQTGPA-AARTQEQVNELRTEISMLQERARSA 103
                 667889****************************8877654.5688999999999999999998865 PP

>> FlxA  FlxA-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   3.9   3.9e-05     0.058       4      92 ..      28     120 ..      25     125 .] 0.81

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 3.9e-05
        FlxA   4 ssasssssssgsasqiasLqkQiknlqkqLkelses....deltkeekkkqqqliqaQIqqlqaQIaqlqqqqaekaqekqqsekeekskskq 92 
                 s  + ++ s++   + ++L+  ik++q q+ e+ +     ++l k +    +   q+Q++ l+ +I  lq+ +++ a+++++ e  +++  +q
  KOO21845.1  28 SRPVIAKGSKSDRLRREELTAAIKDAQRQIAEVVTRvkryEKLLKRQTGPAAARTQEQVNELRTEISMLQERARSAAEDAANMEAGDMKDAEQ 120
                 555556666777778899**************9999877777777777788999*****************9999999999888888765444 PP

>> Phage_Mu_Gam  Bacteriophage Mu Gam like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   3.0   3.8e-05     0.056       4      61 ..      50     107 ..      47     119 .. 0.90

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 3.8e-05
                   HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCT CS
  Phage_Mu_Gam   4 anwalrkiaelkreleeieaeaneeiaaikekleaeleplkkeieylesllkqYaean 61 
                   +++a r+iae+ ++++++e+ ++ +   + ++ ++++++l +ei+ l++  +  ae  
    KOO21845.1  50 IKDAQRQIAEVVTRVKRYEKLLKRQTGPAAARTQEQVNELRTEISMLQERARSAAEDA 107
                   67899*******************************************9998887765 PP

>> YlqD  YlqD protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   3.4   4.4e-05     0.065      23      93 ..      44     114 ..      29     123 .. 0.89

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 4.4e-05
        YlqD  23 qqlqaqieqldkelqqLefqakrlikeikkqsaqqieeiqeqvekekserlekkkqllqqleqvqkLelgs 93 
                 ++l+a+i+ ++++++++ +  kr +k +k+q+  ++++ qeqv++ + e+   ++++++  e+  ++e g 
  KOO21845.1  44 EELTAAIKDAQRQIAEVVTRVKRYEKLLKRQTGPAAARTQEQVNELRTEISMLQERARSAAEDAANMEAGD 114
                 7899********************************************99999999999999999999886 PP

>> Complex1_LYR_2  Complex1_LYR-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   1.0   5.4e-05     0.081      28      71 ..      43      85 ..      21     120 .. 0.73

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 5.4e-05
  Complex1_LYR_2 28 raefrrhkhlknpe.eialflknqreYaellerynpglkmteeek 71
                    r+e+ +   +k+++ +ia+ ++  + Y +ll+r+   + +  +e+
      KOO21845.1 43 REELTA--AIKDAQrQIAEVVTRVKRYEKLLKRQTGPAAARTQEQ 85
                    444555..7775555*******************33344444444 PP

>> Fmp27_WPPW  RNA pol II promoter Fmp27 protein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   4.0   0.00018      0.27     179     250 ..      42     117 ..       4     125 .] 0.65

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.00018
  Fmp27_WPPW 179 Rleeleeqiekleekleelelkseke....deelkeeieelekeikelkeklefletlledlkeseesseeeesks 250
                 R eel++ i++ ++++ e+ ++ ++     ++++     +++++++el++++++l++  ++  e++++ e  ++k+
  KOO21845.1  42 RREELTAAIKDAQRQIAEVVTRVKRYekllKRQTGPAAARTQEQVNELRTEISMLQERARSAAEDAANMEAGDMKD 117
                 6677777777777777777777777644444444444566667777777777777776666666665444333322 PP

>> SlyX  SlyX
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.8   0.4     0.028        42      20      48 ..      44      72 ..      40      81 .. 0.71
   2 ?    9.9   1.8   0.00076       1.1      27      57 ..      80     110 ..      74     121 .. 0.82

  Alignments for each domain:
  == domain 1  score: 4.8 bits;  conditional E-value: 0.028
                HHHHHHHHHHHHHHHHHHHHHHHHHHT-X CS
        SlyX 20 eeLndvvaeqqqqidrlqrqlrllaerlk 48
                eeL +++ + q+qi++  +++++ ++ lk
  KOO21845.1 44 EELTAAIKDAQRQIAEVVTRVKRYEKLLK 72
                67777777888888887777777666664 PP

  == domain 2  score: 9.9 bits;  conditional E-value: 0.00076
                 HHHHHHHHHHHHHHHHHHHT-XXXXXXXXXX CS
        SlyX  27 aeqqqqidrlqrqlrllaerlkeleessgas 57 
                 a+ q+q+ +l++++ +l+er ++++e++++ 
  KOO21845.1  80 ARTQEQVNELRTEISMLQERARSAAEDAANM 110
                 78999****************9998887644 PP

>> VSG_B  Trypanosomal VSG domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.7   8.6    0.0026       3.8      59     157 ..      11     116 ..       3     123 .. 0.71

  Alignments for each domain:
  == domain 1  score: 6.7 bits;  conditional E-value: 0.0026
       VSG_B  59 sladedwlnkfaeeeddakatktkkaakkncgalkafWkeakkaakakkkk.........eltrpantrararanekiqqiaekaaeiyseikkekeka 148
                 s  ++++  +f++ ++++   +  ++++k+ + ++++ ++a k a+++  +         +l + ++ +a+ar++e++++++++   ++++++ ++e+a
  KOO21845.1  11 SATTAKFTTMFKHPRSSS--RPVIAKGSKSDRLRREELTAAIKDAQRQIAEvvtrvkryeKLLKRQTGPAAARTQEQVNELRTEISMLQERARSAAEDA 107
                 566667777777776665..2333344444444444444444444444333556699999999999********************************9 PP

       VSG_B 149 kkaraeklk 157
                  + +a+++k
  KOO21845.1 108 ANMEAGDMK 116
                 988777776 PP

>> DUF883  Bacterial protein of unknown function (DUF883)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.7   1.1     0.063        94      42      68 ..      41      67 ..       4      75 .. 0.73
   2 ?    9.2   4.3    0.0012       1.8      21      62 ..      78     119 ..      64     122 .. 0.82

  Alignments for each domain:
  == domain 1  score: 3.7 bits;  conditional E-value: 0.063
      DUF883 42 rarerlrdaeeavaerakeaaeaaddy 68
                  re+l++a +++++++ e++ ++++y
  KOO21845.1 41 LRREELTAAIKDAQRQIAEVVTRVKRY 67
                446777777777777777777777666 PP

  == domain 2  score: 9.2 bits;  conditional E-value: 0.0012
      DUF883  21 aadeageeaeelRerleerlerarerlrdaeeavaerakeaa 62 
                 aa++++e+++elR +++   erar++++da++  a  +k+a 
  KOO21845.1  78 AAARTQEQVNELRTEISMLQERARSAAEDAANMEAGDMKDAE 119
                 68899*************************998888888775 PP

>> DUF4407  Domain of unknown function (DUF4407)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.8   9.7    0.0025       3.7     130     221 ..      17     113 ..       2     125 .] 0.49

  Alignments for each domain:
  == domain 1  score: 6.8 bits;  conditional E-value: 0.0025
     DUF4407 130 a..........ltaelaeleaqiaalqaeidaaearldalraeaqkeldgtkgtgttgvaGkgpaakekkaqldaaqaelaelkakldatarlaalrae 218
                            +++ +a+  +  +  ++e++aa ++++++ ae+   ++         ++  gpaa + ++q +++++e+  l+++  a+++ +++ + 
  KOO21845.1  17 FttmfkhprssSRPVIAKGSKSDRLRREELTAAIKDAQRQIAEVVTRVKRYE---KLLKRQTGPAAARTQEQVNELRTEISMLQER--ARSAAEDAANM 110
                 2444555555544444444444444444444444444444444444444322...1224556789999999999999999999998..44444444333 PP

     DUF4407 219 lae 221
                  a+
  KOO21845.1 111 EAG 113
                 333 PP

>> HalX  HalX domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.0       5.8   8.7e+03      18      54 ..       6      13 ..       3      19 .. 0.47
   2 ?    3.4   0.3     0.066        99      38      57 ..      44      63 ..      38      70 .. 0.86
   3 ?    9.7   2.6   0.00068         1      20      59 ..      69     108 ..      62     120 .. 0.85

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 5.8
        HalX 18 KravLeaekseaeLadseeYqeLearleelraqldet 54
                K+a L a                             t
  KOO21845.1  6 KQARLSA-----------------------------T 13
                4444433.............................3 PP

  == domain 2  score: 3.4 bits;  conditional E-value: 0.066
        HalX 38 qeLearleelraqldetlde 57
                +eL+a + + ++q+ e++++
  KOO21845.1 44 EELTAAIKDAQRQIAEVVTR 63
                699***********999987 PP

  == domain 3  score: 9.7 bits;  conditional E-value: 0.00068
        HalX  20 avLeaekseaeLadseeYqeLearleelraqldetldeld 59 
                  +L+++  +a  +  e+  eL++++  l++++   +++  
  KOO21845.1  69 KLLKRQTGPAAARTQEQVNELRTEISMLQERARSAAEDAA 108
                 6899********************************9933 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (125 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1847  (0.103017); expected 358.6 (0.02)
Passed bias filter:                      683  (0.0380947); expected 358.6 (0.02)
Passed Vit filter:                        88  (0.00490825); expected 17.9 (0.001)
Passed Fwd filter:                        13  (0.000725082); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.43u 0.27s 00:00:00.70 Elapsed: 00:00:00.41
# Mc/sec: 925.89
//
Query:       KOO21846.1  [L=314]
Description: hypothetical protein Ctob_003431 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      3e-08   33.4  18.7    4.7e-08   32.7  18.7    1.3  1  TPT       Triose-phosphate Transporter family


Domain annotation for each model (and alignments):
>> TPT  Triose-phosphate Transporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.7  18.7   2.6e-12   4.7e-08      24     289 ..      17     291 ..       5     292 .. 0.77

  Alignments for each domain:
  == domain 1  score: 32.7 bits;  conditional E-value: 2.6e-12
         TPT  24 ilnvfpyPltvsavqllvgsvlilvlwalglkk....rpkisseflkailplalvktlghvlavvslskvaVSfthtvKasePiFtvilsrlllgekls 118
                 ++++++yP+  s    +v  vl++++++l        ++++      a+  + l+ t+   +++++l++++    + + a++P++t+++ +ll +  ++
  KOO21846.1  17 LFSLAKYPTAYSFYTCIVSAVLLVPVFILVPSTwgvpTKEMFLGPHYALTLIVLFTTFDLGFTNIALANISAALQQCIAATAPFWTIMIESLLHRRCYH 115
                 66777888888888877777777777765222212112233333444555556777888889************************************* PP

         TPT 119 llvylsLlpivgGvalasvtEl.sFnligfisAlisnltfslrnifsKkllkk...lkd..ldalnlfaiitilslllllPvallvegvlktpsllkst 211
                   +y ++l +v G +lasv  + s  ++g i+A+i+ ++++++  +   ++++   +k+  +  l l++ + +l + + +P +l+  +    ++++k +
  KOO21846.1 116 PILYSTVLGLVFGAVLASVATVrSLSVFGAIAAVIAVICSASKFALTHAAFTQqnsTKEtsIGPLALLFWVDLLMIPIYMPWVLINGE---LIDMFKDS 211
                 ******************9777489***********************9999954444477888899999999999999998777666...44444444 PP

         TPT 212 k...vslkevllllllsgvlfhlynqvaymvLervspvthsvantvKrvvvIvlsvlvfknp...vsllnaiGtavaivGvflY 289
                 +   +++ +++ +  l gv       + y +L+ v++ + + an    v+ I++s+    ++   vs+   +G +++i+  +lY
  KOO21846.1 212 SmhaNEWWQFTGTAALGGV----RALTQYLMLSLVTATSTATANIFTMVLNIMISMTWQPKEllaVSPELFVGIVIVICCSVLY 291
                 3000345555555555555....67788***************************98876643336777789999999888888 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (314 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1083  (0.0604049); expected 358.6 (0.02)
Passed bias filter:                      406  (0.0226449); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.26s 00:00:00.73 Elapsed: 00:00:00.38
# Mc/sec: 2489.85
//
Query:       KOO21847.1  [L=415]
Description: 16s rRNA processing protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
      6e-15   55.2   0.1    1.2e-14   54.3   0.1    1.5  1  RimM         RimM N-terminal domain
  ------ inclusion threshold ------
      0.041   12.0  10.6      0.059   11.5  10.6    1.1  1  DNA_pol_phi  DNA polymerase phi
        3.1    6.8  13.4          6    5.9  13.4    1.4  1  DUF2457      Protein of unknown function (DUF2457)


Domain annotation for each model (and alignments):
>> RimM  RimM N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.3   0.1   1.9e-18   1.2e-14       1      83 [.     102     188 ..     102     189 .. 0.87

  Alignments for each domain:
  == domain 1  score: 54.3 bits;  conditional E-value: 1.9e-18
                 EEEEEEEEETTTTEEEEEE-SSSGGGGGGS.SSEEEE..ETTEEEEE-EEEEEEE..TTEEEEEETT--SHHHHHTTTT-EEEEETT CS
        RimM   1 evGkIvgahGlkGevkVkpftdfpealfky.grvlle.akkgetreltvesvrvh..kkgvivklegvddrdaAealkgaelfvprs 83 
                 e+G + gahG +Ge+kV + +df+ +++   g+ +++ ++++ +re +v ++r     + ++v++e v +r+aA alkg++l v+r+
  KOO21847.1 102 EIGVVLGAHGTRGELKVLSDSDFAHERLCHaGPTWMRrPRRRAPREERVLRGRKGpgTNVFLVTIESVRSREAADALKGSTLHVRRE 188
                 69*********************88777642555555477777999*******8886779************************997 PP

>> DNA_pol_phi  DNA polymerase phi
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5  10.6   9.8e-06     0.059     638     685 ..     305     352 ..     291     368 .. 0.85

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 9.8e-06
  DNA_pol_phi 638 fedededeeddeeeeeeddeededseedddeeesdedeededdedvde 685
                  +e+eded+e+d e+++ dd +deds+ +++++e+ e   de+d+d+de
   KOO21847.1 305 AEGEDEDDENDVEDASVDDADDEDSDVSASDHEGGEAGGDEEDGDEDE 352
                  48999999999999999*********9999988888888888888887 PP

>> DUF2457  Protein of unknown function (DUF2457)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.9  13.4     0.001         6      79     126 ..     307     354 ..     300     365 .. 0.78

  Alignments for each domain:
  == domain 1  score: 5.9 bits;  conditional E-value: 0.001
     DUF2457  79 dddeedededddstvedlseeasdGyetDnEaGFAdSdeeddedddle 126
                  +de+de++ +d++v d ++e+sd   +D E G A  deed ++d+ +
  KOO21847.1 307 GEDEDDENDVEDASVDDADDEDSDVSASDHEGGEAGGDEEDGDEDESV 354
                 356677777777888888889999999999999999998887777765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (415 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       593  (0.0330749); expected 358.6 (0.02)
Passed bias filter:                      439  (0.0244855); expected 358.6 (0.02)
Passed Vit filter:                        62  (0.00345808); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.55u 0.25s 00:00:00.80 Elapsed: 00:00:00.43
# Mc/sec: 2881.11
//
Query:       KOO21848.1  [L=93]
Description: hypothetical protein Ctob_003420 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.41   10.5   1.7       0.45   10.4   0.3    1.7  2  Arc       Arc-like DNA binding domain


Domain annotation for each model (and alignments):
>> Arc  Arc-like DNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.1      0.27   4.8e+03      16      25 ..      34      43 ..      31      45 .. 0.68
   2 ?   10.4   0.3   2.5e-05      0.45      11      28 ..      72      89 ..      70      91 .. 0.93

  Alignments for each domain:
  == domain 1  score: -2.5 bits;  conditional E-value: 0.27
                HHHHHHHHHH CS
         Arc 16 rekvkevAee 25
                 e+ k+ Ae+
  KOO21848.1 34 HERFKQAAEA 43
                5777888887 PP

  == domain 2  score: 10.4 bits;  conditional E-value: 2.5e-05
                CEHHHHHHHHHHHHHTTS CS
         Arc 11 lPeevrekvkevAeengR 28
                +P e+re+++e A ++ R
  KOO21848.1 72 MPVELRELLREHAMSHLR 89
                9**************988 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (93 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       451  (0.0251548); expected 358.6 (0.02)
Passed bias filter:                      353  (0.0196888); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.21s 00:00:00.56 Elapsed: 00:00:00.36
# Mc/sec: 771.34
//
Query:       KOO21849.1  [L=918]
Description: symplekin [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.9e-45  155.3   0.3    1.9e-45  155.3   0.3    2.5  3  Symplekin_C  Symplekin tight junction protein C terminal
    2.5e-14   53.5   0.0    4.9e-14   52.5   0.0    1.4  1  DUF3453      Domain of unknown function (DUF3453)
  ------ inclusion threshold ------
       0.77   10.2   3.5         51    4.5   0.8    3.4  2  HEAT         HEAT repeat


Domain annotation for each model (and alignments):
>> Symplekin_C  Symplekin tight junction protein C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.0      0.43   2.6e+03      35      72 ..      79     114 ..      16     119 .. 0.59
   2 ?   -2.3   0.1      0.67     4e+03      25      62 ..     278     321 ..     262     329 .. 0.49
   3 !  155.3   0.3   3.1e-49   1.9e-45       1     185 [.     704     880 ..     704     881 .. 0.98

  Alignments for each domain:
  == domain 1  score: -1.7 bits;  conditional E-value: 0.43
  Symplekin_C  35 vfrrllaassekseeekekspltpaellvalhnlekkk 72 
                      ll a s     + +++ ++++e lv  ++ e+++
   KOO21849.1  79 TAGTLLNAAS--AADSVRTAAVKACEALVLAYTDEPED 114
                  3333333333..34444555777777777777777655 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 0.67
  Symplekin_C  25 iklnekvvkevfrrllaass......ekseeekekspltpaell 62 
                  + ++++++++++  ll+++        ++e +++ + l + e l
   KOO21849.1 278 VANAQQSLRAALLTLLKTTRaredraVEEELATALRHLGANEQL 321
                  33356677777777777766333333222333333333333333 PP

  == domain 3  score: 155.3 bits;  conditional E-value: 3.1e-49
  Symplekin_C   1 DvrflipilgglskeevislLpkliklnekvvkevfrrllaassekseeekekspltpaellvalhnle.kkkkevelkslvealdlclsekevftqe 97 
                  D r+++p+l++  +  v s+Lp+l+  +++  ++++  l++a++          pl pa+ll+ lh+l+ + + +v+lk+l++ ++ cl+ek+vft++
   KOO21849.1 704 DGRYAVPLLPFAPRPLVESVLPRLLGMAPETASAALAALMHAKP---------PPLPPAHLLLLLHQLPsDGSAGVSLKQLIDGVQACLAEKSVFTMQ 792
                  789**************************************999.........8***************98899************************ PP

  Symplekin_C  98 vlaaalqqlveeeplpllfmrtviqalkkypslrefvsniLprLikkqvWknkklWkgfircakklkpksfeallqLPeeqleellkk 185
                  v+a+alq +v  +plpl+fmrt iqal  +p l +f + +L+ Li++q+W++++lW gf++c+++  p+s++++l LP++ql e++++
   KOO21849.1 793 VVADALQLIVHLDPLPLIFMRTTIQALLYHPLLAQFTMGLLHHLISRQIWTSPRLWTGFVKCCQQGMPHSLPVMLALPAPQLLEIIEQ 880
                  **********************************************************************************999986 PP

>> DUF3453  Domain of unknown function (DUF3453)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.5   0.0   8.2e-18   4.9e-14       4     212 ..      35     319 ..      32     325 .. 0.83

  Alignments for each domain:
  == domain 1  score: 52.5 bits;  conditional E-value: 8.2e-18
     DUF3453   4 vvkkvIqaaasiYplvlrliikns.....eds.etWekmtalKdeIlrlvdssd.ndgvrlaaiKFiervilvqtrgvad.....rnes........ke 82 
                 ++k++  aa+s+ + +l l+  ++     +    tW ++ +l++    l++ ++  d+vr+aa+K  e ++l+ t +  d        +          
  KOO21849.1  35 TLKRALAAATSLLRPTLVLLLAEKdeaaaKALePTWGHLRKLRETAGTLLNAASaADSVRTAAVKACEALVLAYTDEPEDegtesA--EgppgadvtSG 131
                 7899999999999999888865442444433459**********999996432236*******************99555555440..14455566633 PP

     DUF3453  83 qseislsqvpd.......................................................nhpilsprkLeaEAkrlLdrlLkvlqeasilts 126
                  s + ls +p                                                         hp+l+ ++LeaE++ +L +l + l      ++
  KOO21849.1 132 GSGWRLSALPAaaaledgnganrgvhvgeggtsgaessgnegggetgsegaaaitaseesklgkrpPHPLLERAALEAEGEATLTLLETTLLAP--PSA 228
                 47899999999**************************************************************************999988765..456 PP

     DUF3453 127 slviatlnslasiakqRpqfankilqallsfnplkk..pnlpptlsklqvksvektlkvlllnllk..nsse...hplqskiqqlleklgall 212
                 +++ ++l+s+a++a+qR  ++++   +l  +  + +    +   l   qv+ ++ +l+++ll llk  +  +     +  ++ ++l  lga +
  KOO21849.1 229 TVLLVLLTSIAALARQRRVLLQRLSRTLAALSRALLerAASLAALPSHQVANAQQSLRAALLTLLKttR--AredRAVEEELATALRHLGANE 319
                 6999**************************99877789677777999*******************552..3334677777777777777665 PP

>> HEAT  HEAT repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.2   0.1     0.011        65       1      16 [.      20      35 ..      20      46 .. 0.76
   2 ?    4.5   0.8    0.0085        51      11      28 ..      88     105 ..      82     107 .. 0.81

  Alignments for each domain:
  == domain 1  score: 4.2 bits;  conditional E-value: 0.011
                HHHHHHHHHT-SSHHH CS
        HEAT  1 llPlllkllsDpspeV 16
                llP+ll+ lsD+s+  
  KOO21849.1 20 LLPALLTRLSDESAPT 35
                89*********88754 PP

  == domain 2  score: 4.5 bits;  conditional E-value: 0.0085
                 -SSHHHHHHHHHHHHHHH CS
        HEAT  11 DpspeVReaAakaLgala 28 
                 + + +VR aA+ka+ al+
  KOO21849.1  88 SAADSVRTAAVKACEALV 105
                 57789********99986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (918 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       556  (0.0310112); expected 358.6 (0.02)
Passed bias filter:                      291  (0.0162307); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.66u 0.26s 00:00:00.92 Elapsed: 00:00:00.42
# Mc/sec: 6619.60
//
Query:       KOO21850.1  [L=332]
Description: gdp-l-fucose synthase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.9e-54  184.7   0.0    2.6e-54  184.3   0.0    1.1  1  Epimerase        NAD dependent epimerase/dehydratase family
    4.4e-12   46.0   0.0    7.1e-12   45.4   0.0    1.3  1  GDP_Man_Dehyd    GDP-mannose 4,6 dehydratase
    1.8e-07   30.6   0.5    1.5e-06   27.6   0.0    2.1  2  Polysacc_synt_2  Polysaccharide biosynthesis protein
    6.2e-06   25.5   0.0    9.5e-06   24.9   0.0    1.2  1  RmlD_sub_bind    RmlD substrate binding domain
    0.00056   19.0   0.4     0.0058   15.7   0.4    2.2  1  3Beta_HSD        3-beta hydroxysteroid dehydrogenase/isomeras
  ------ inclusion threshold ------
      0.019   14.1   0.1      0.071   12.3   0.0    1.8  2  NAD_binding_4    Male sterility protein


Domain annotation for each model (and alignments):
>> Epimerase  NAD dependent epimerase/dehydratase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  184.3   0.0   8.6e-58   2.6e-54       1     233 [.      14     246 ..      14     252 .. 0.95

  Alignments for each domain:
  == domain 1  score: 184.3 bits;  conditional E-value: 8.6e-58
                 EEEETTTSHHHHHHHHHHHHCT...SEEEEEES-STTTTCHHCHHCEEEE--TT-HHHHHHHHHHHT-SEEEE--S.---HHHHHHSHHHHHHHHTHHH CS
   Epimerase   1 ilVtGatGfiGsalvkallekg...yevigldrlssasntarledlelveldltdrsalerlfkeeqpdavihlAa.vggvaassedpadfieknlqgt 95 
                 ++VtG++G++G+ +  ++ ++     ++i l+++               ++dl+d+++++++f++++p++vihlAa vgg   +++++ +f+++n++++
  KOO21850.1  14 VMVTGGSGLVGQGIKANIDREAnaaETWIFLTSK---------------DGDLRDKEQTRAIFEKHKPTHVIHLAArVGGLFSNMKYRVEFWRENVAIN 97 
                 68****************999999566*******...............************************************************** PP

                 HHHHHHHHHHTCTEEEEEEEGGGGTSCSSSS.BSTCSTTS--.--SSHHHHHHHHHHHHHHHHHHHHT-EEEEEEESEEESTT.S-TTSTTSHHHHHHH CS
   Epimerase  96 lnlleaarkagvkrllflsSsevYGkdaeqp.keettltgpl.kpnspYaaaKlageklveayaaqyglnaiilrlfnlyGpr.ngegevsrvipalir 191
                  n+l+ ++++gvk+++ + S+++++++++ p +e ++++gp  ++n+ Ya+aK++++ + + y+ q+g+ ++++ ++n++Gp+ n+  e+ +v+p l+ 
  KOO21850.1  98 DNVLHLSHEYGVKKVVSCLSTCIFPDKTTYPiDETMIHNGPPhHSNEGYAYAKRMIDVINRCYHLQHGCMFTSVVPTNIFGPHdNFSIEDGHVLPGLMH 196
                 *****************************9989999*************************************************************** PP

                 HHHTTSS........SEEEETTST-EEEEEEHHHHHHHHHHHHHHHTT-S CS
   Epimerase 192 kilegkq........evtllgdgtalRdflyveDvaeaillvlehvdagd 233
                 k+l++kq        +++++g+gt+lR+f+++eD+  +++++l+++d+ +
  KOO21850.1 197 KCLLAKQkqaageeaSFVIWGSGTPLRQFIFSEDLGALMVWALREYDSIE 246
                 ****77334666677******************************99864 PP

>> GDP_Man_Dehyd  GDP-mannose 4,6 dehydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.4   0.0   2.4e-15   7.1e-12      55     292 ..      45     299 ..      15     310 .. 0.75

  Alignments for each domain:
  == domain 1  score: 45.4 bits;  conditional E-value: 2.4e-15
                    EEEE--TT-HHHHHHHHHHHT-SEEEE--S---.HHHHTTSHHHHHHHHTHHHHHHHHHHHHCT..TTSEEEEEEEGGGG-S-SSSSB-TT..... CS
  GDP_Man_Dehyd  55 klhkgDltDssslerllaevqpdevynLAAqsh.VdvsfekPeytaevnvlGtlrLLeairalglekkvrfyqaStsEvYGkvqevpqtEt..... 144
                    +   gDl+D+++ + ++++++p+ v++LAA        ++   ++++ nv    ++L +  ++g++   +++   +  ++ + +  p++Et     
     KOO21850.1  45 TSKDGDLRDKEQTRAIFEKHKPTHVIHLAARVGgLFSNMKYRVEFWRENVAINDNVLHLSHEYGVK---KVVSCLSTCIFPDKTTYPIDETmihng 137
                    45689*************************9653666677788999******************96...566666667999999999999866666 PP

                    S-----SHHHHHHHHHHHHHHHHHHHH---EEEEEE-EEESTTS-TTS........CCCHHHHHHHHHHTTS-C-EEC.TTTT-EEEEEEHHHHHH CS
  GDP_Man_Dehyd 145 tpfyPrsPYaaaKlyadwivvnyreayglfavngilfnhesprrgetf........vtrkitravarialgkqevlyl.GnldakRdwghvkDyve 231
                     p + +  Ya aK + d i + y+ ++g   ++ +  n  +p+ + ++          +k  +a ++ a+g++  +++ G + + R + + +D   
     KOO21850.1 138 PPHHSNEGYAYAKRMIDVINRCYHLQHGCMFTSVVPTNIFGPHDNFSIedghvlpgLMHKCLLAKQKQAAGEEASFVIwGSGTPLRQFIFSEDLGA 233
                    78899************************99999999988888654434444444477788888888889987666655***************88 PP

                    HH.HHHHHCSS---EEE-TT-EEEC..HHCHHCCHHCCCHHHH..HH............TTGGCCC CS
  GDP_Man_Dehyd 232 am.wlmlqqdkpedyviatgethsv..refvelaflelgktie..wegkgeeevgrakesgkvvve 292
                     m w++ + d+ e ++++  e+ +v  +e + + ++ +g t +  +++++ + ++++++ ++++++
     KOO21850.1 234 LMvWALREYDSIEPIILSVPEEAEVtiKEAAMAVVEGMGYTGKvtFDTSKADGQHKKTACNDKLMK 299
                    761555567999999999888766611555555555555543300333333333344444555555 PP

>> Polysacc_synt_2  Polysaccharide biosynthesis protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.0   0.4     0.031        91       1      25 [.      14      39 ..      14      47 .. 0.77
   2 !   27.6   0.0   5.1e-10   1.5e-06      46     135 ..      34     129 ..      26     133 .. 0.80

  Alignments for each domain:
  == domain 1  score: 2.0 bits;  conditional E-value: 0.031
                     EEEETTTSHHHHHHHHHHHHH.B-SE CS
  Polysacc_synt_2  1 vlvtGagGsiGselvrqilkk.kpkk 25
                     v+vtG++G +G+ +  +i ++ ++++
       KOO21850.1 14 VMVTGGSGLVGQGIKANIDREaNAAE 39
                     8***********99888876645555 PP

  == domain 2  score: 27.6 bits;  conditional E-value: 5.1e-10
                      ...-TTEEEE....E--TT-HHHHHHHTT..T-SEEEE-----.-HHHHHHSHHHHHHHHHHHHHHHHHHHHHTT-SEEE.EEEE....GGGSS CS
  Polysacc_synt_2  46 elkkkklkveivpvigdvrdkerlekaleelkvdvvfhaAAlK.hVPlveenpleaiktNvlgtenvieaaieagvkkvv.liSt....DKAvn 133
                      e+++ ++ +++++  gd+rdke+ + ++e++k+  v+h AA    +    ++ +e ++ Nv   +nv++ ++e+gvkkvv ++St    DK  +
       KOO21850.1  34 EANAAETWIFLTSKDGDLRDKEQTRAIFEKHKPTHVIHLAARVgGLFSNMKYRVEFWRENVAINDNVLHLSHEYGVKKVVsCLSTcifpDKTTY 127
                      4444555567777889**********************9996514455556789*************************965787666688887 PP

                      -- CS
  Polysacc_synt_2 134 Pt 135
                      P+
       KOO21850.1 128 PI 129
                      76 PP

>> RmlD_sub_bind  RmlD substrate binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.9   0.0   3.2e-09   9.5e-06       1      60 [.      12      74 ..      12      77 .. 0.85

  Alignments for each domain:
  == domain 1  score: 24.9 bits;  conditional E-value: 3.2e-09
                   EEEEEESTTSHHHHHHHHHCTTTS...EEEEEE-TTT--TTSHHHHHHHHHHH--SEEEE--- CS
  RmlD_sub_bind  1 mkilvtGanGqlGseLakqlaeeg...levlaltreeldltdaeavaellkeakpdvvvnaAA 60
                   m ++vtG++G++G+ +++++++e       + lt+++ dl+d+e+ +++++++kp  v+++AA
     KOO21850.1 12 MVVMVTGGSGLVGQGIKANIDREAnaaETWIFLTSKDGDLRDKEQTRAIFEKHKPTHVIHLAA 74
                   679*************999987541112345569****************************9 PP

>> 3Beta_HSD  3-beta hydroxysteroid dehydrogenase/isomerase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.4   1.9e-06    0.0058      50     189 ..      47     184 ..      15     244 .. 0.80

  Alignments for each domain:
  == domain 1  score: 15.7 bits;  conditional E-value: 1.9e-06
   3Beta_HSD  50 iegDvtdkdkleealegvd..vvihlaslv.dvag.kltedeimkvnvkGTrnvleacvkagvrvlvYtSsaevvgpnslgeeilngdEeleyeslhqd 144
                   gD++dk++ ++  e+ +   vihla+ v  +++ + ++ e+ + nv    nvl    + gv+++v + s   ++p+++  +i     e+ +++ + +
  KOO21850.1  47 KDGDLRDKEQTRAIFEKHKptHVIHLAARVgGLFSnMKYRVEFWRENVAINDNVLHLSHEYGVKKVVSCLST-CIFPDKTTYPID----ETMIHNGPPH 140
                 579**********999876336899887541556557788889999*********************98775.799978888887....4455555666 PP

   3Beta_HSD 145 aypesKalaEklvlkaNgrtlknggrlyTcaLRpagiyGegdkll 189
                   +e  a a +++   N     + g ++T    p+ i+G+ d++ 
  KOO21850.1 141 HSNEGYAYAKRMIDVINRCYHLQHGCMFTSV-VPTNIFGPHDNFS 184
                 6666667777777777776555666888865.5*******99875 PP

>> NAD_binding_4  Male sterility protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.5   0.0      0.19   5.6e+02       1      31 [.      16      48 ..      16      65 .. 0.70
   2 ?   12.3   0.0   2.4e-05     0.071      89     208 ..      67     178 ..      53     207 .. 0.72

  Alignments for each domain:
  == domain 1  score: -0.5 bits;  conditional E-value: 0.19
                   EE-TTSHHHHHHHHHHHHHS-.T..EEEEEE-S CS
  NAD_binding_4  1 lTGaTGFLGkvLlekLLrttpev..kiyllvRa 31
                   +TG++G +G+ + +++ r+ ++   +i+l  + 
     KOO21850.1 16 VTGGSGLVGQGIKANIDREANAAetWIFLTSKD 48
                   7********999888888777665455554444 PP

  == domain 2  score: 12.3 bits;  conditional E-value: 2.4e-05
                    -EEEE--SS-S.ST...TSSE.EHHHHHHHHHHHHHHHTSSS--.-EEEEEEGGGTTS-TTT--SSS-H......HHH--EEEETTTCCC.HHHHH CS
  NAD_binding_4  89 dviihsaAtvnfde...pyke.llrvNveGtrevlelakklkklkvllhvSTayvngeregeveekvyeegekeekldederaklkglpn.tYeqs 179
                    +++ih aA+v       +y++ ++r Nv    +vl l+++   +kv+   ST ++ ++ +  ++e+++             ++    ++n +Y + 
     KOO21850.1  67 THVIHLAARVGGLFsnmKYRVeFWRENVAINDNVLHLSHEYGVKKVVSCLSTCIFPDKTTYPIDETMI-------------HNGPPHHSNeGYAYA 149
                    689******964321235654599****************99999*******9999999988855443.............444444444477777 PP

                    HHHHHHHHHHHHHHH---EEEEEE-EEE- CS
  NAD_binding_4 180 KalaEklvrearrrsglpvvivRpsiitg 208
                    K + + + r ++ ++g  ++ v p++i g
     KOO21850.1 150 KRMIDVINRCYHLQHGCMFTSVVPTNIFG 178
                    77777777777766666666666666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (332 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       527  (0.0293937); expected 358.6 (0.02)
Passed bias filter:                      488  (0.0272185); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.48u 0.24s 00:00:00.72 Elapsed: 00:00:00.37
# Mc/sec: 2673.08
//
Query:       KOO21851.1  [L=1012]
Description: transient receptor potential channel [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.3e-18   65.1   6.1    4.6e-05   22.7   0.4    4.4  4  EF-hand_1     EF hand
    7.9e-18   64.7   3.7    8.2e-11   42.2   0.6    2.7  2  EF-hand_7     EF-hand domain pair
    1.6e-13   49.4   5.0      0.011   15.6   0.1    4.7  4  EF-hand_6     EF-hand domain
    2.7e-11   43.1   4.8    0.00011   22.0   0.1    3.6  3  EF-hand_8     EF-hand domain pair
    2.2e-10   39.5  12.3    0.00011   21.5   0.1    4.2  5  EF-hand_5     EF hand
      5e-06   25.9  11.0    8.6e-06   25.2  11.0    1.4  1  Ion_trans     Ion transport protein
    8.8e-06   26.2   0.0    0.00057   20.4   0.0    3.5  3  Ank_2         Ankyrin repeats (3 copies)
    1.9e-05   24.6   3.4      0.012   15.5   0.4    3.7  3  EF-hand_4     Cytoskeletal-regulatory complex EF hand
      4e-05   23.9   0.5    0.00012   22.3   0.2    2.1  1  EF-hand_9     EF-hand domain
     0.0017   18.9   0.0        7.3    7.3   0.1    4.4  4  Ank_4         Ankyrin repeats (many copies)
     0.0023   18.1   2.3      0.077   13.2   1.5    2.7  2  Dockerin_1    Dockerin type I domain
  ------ inclusion threshold ------
       0.03   14.6   0.4         17    5.8   0.3    3.4  3  SPARC_Ca_bdg  Secreted protein acidic and rich in cysteine Ca


Domain annotation for each model (and alignments):
>> EF-hand_1  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.9   0.1   1.1e-07   0.00017       2      29 .]      83     110 ..      82     110 .. 0.94
   2 !   22.7   0.4   3.1e-08   4.6e-05       1      29 []     119     147 ..     119     147 .. 0.93
   3 ?   -1.5   0.0       1.6   2.4e+03      13      26 ..     192     205 ..     190     207 .. 0.84
   4 !   21.5   0.2   7.2e-08   0.00011       2      27 ..     220     245 ..     219     247 .. 0.88

  Alignments for each domain:
  == domain 1  score: 20.9 bits;  conditional E-value: 1.1e-07
                 HHHHHHHHTTTSSSEEEHHHHHHHHHHH CS
   EF-hand_1   2 lkeiFrefDkDgdGkIdfeEfkellkkl 29 
                 +k+ F+e D +gdG Id+ E++ +lk+l
  KOO21851.1  83 WKRCFDECDINGDGNIDLRELLVVLKRL 110
                 7899********************9985 PP

  == domain 2  score: 22.7 bits;  conditional E-value: 3.1e-08
                 HHHHHHHHHTTTSSSEEEHHHHHHHHHHH CS
   EF-hand_1   1 elkeiFrefDkDgdGkIdfeEfkellkkl 29 
                 +lk ++re+D+D dG ++f+Ef  l+++l
  KOO21851.1 119 DLKTLIREVDVDEDGVLNFDEFSVLMRTL 147
                 58899*********************975 PP

  == domain 3  score: -1.5 bits;  conditional E-value: 1.6
                 SSSEEEHHHHHHHH CS
   EF-hand_1  13 gdGkIdfeEfkell 26 
                 +dG++  +E+  ++
  KOO21851.1 192 RDGFLGPNELHIAF 205
                 7********97665 PP

  == domain 4  score: 21.5 bits;  conditional E-value: 7.2e-08
                 HHHHHHHHTTTSSSEEEHHHHHHHHH CS
   EF-hand_1   2 lkeiFrefDkDgdGkIdfeEfkellk 27 
                 lk+  + +D++gdG+++f+Ef ++ +
  KOO21851.1 220 LKRRLNQYDRNGDGRLSFDEFSKMAT 245
                 7788899**************99976 PP

>> EF-hand_7  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.2   0.6   5.5e-14   8.2e-11       5      71 .]      84     145 ..      81     145 .. 0.91
   2 !   22.7   0.1   6.5e-08   9.7e-05       6      70 ..     182     244 ..     179     245 .. 0.80

  Alignments for each domain:
  == domain 1  score: 42.2 bits;  conditional E-value: 5.5e-14
   EF-hand_7   5 keaFkelDtdgdgyldkeellrllrkifqgagegsklsdeelellfkefDtdkdGvisfdEFlklyr 71 
                 k++F+e D +gdg +d +ell +l+++    + + + + + l++l++e+D d dGv++fdEF  l+r
  KOO21851.1  84 KRCFDECDINGDGNIDLRELLVVLKRL----ELDIP-PADDLKTLIREVDVDEDGVLNFDEFSVLMR 145
                 789****************888***97....78888.6679*********************99886 PP

  == domain 2  score: 22.7 bits;  conditional E-value: 6.5e-08
   EF-hand_7   6 eaFkelDt.dgdgyldkeellrllrkifqgagegsklsd..eelellfkefDtdkdGvisfdEFlkly 70 
                 + F++lD+  +dg+l ++el+ ++++         +l++  + l++ ++  D ++dG++sfdEF k+ 
  KOO21851.1 182 DLFDKLDSlPRDGFLGPNELHIAFEQ-----VGITSLTRgsKDLKRRLNQYDRNGDGRLSFDEFSKMA 244
                 67888887459********9999998.....44444566445599999****************9875 PP

>> EF-hand_6  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.1   7.2e-06     0.011       2      28 ..      83     109 ..      82     113 .. 0.90
   2 !    7.8   0.0    0.0023       3.5       5      28 ..     123     146 ..     119     154 .. 0.84
   3 !    9.2   0.0   0.00086       1.3       2      28 ..     180     207 ..     179     214 .. 0.88
   4 !   15.4   0.1   8.4e-06     0.013       3      27 ..     221     245 ..     219     252 .. 0.85

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 7.2e-06
   EF-hand_6   2 lreaFklfDkdgdGkidaeElrkalrk 28 
                 +++ F++ D +gdG id  El  +l++
  KOO21851.1  83 WKRCFDECDINGDGNIDLRELLVVLKR 109
                 6899******************99984 PP

  == domain 2  score: 7.8 bits;  conditional E-value: 0.0023
   EF-hand_6   5 aFklfDkdgdGkidaeElrkalrk 28 
                 + ++ D+d dG ++++E+  ++r+
  KOO21851.1 123 LIREVDVDEDGVLNFDEFSVLMRT 146
                 55788*************988884 PP

  == domain 3  score: 9.2 bits;  conditional E-value: 0.00086
   EF-hand_6   2 lreaFklfDkd.gdGkidaeElrkalrk 28 
                 +r++F+++D   +dG++ ++El  a+ +
  KOO21851.1 180 WRDLFDKLDSLpRDGFLGPNELHIAFEQ 207
                 79*******777**********999874 PP

  == domain 4  score: 15.4 bits;  conditional E-value: 8.4e-06
   EF-hand_6   3 reaFklfDkdgdGkidaeElrkalr 27 
                 ++  +++D++gdG ++++E+ k+ +
  KOO21851.1 221 KRRLNQYDRNGDGRLSFDEFSKMAT 245
                 666789**************98765 PP

>> EF-hand_8  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.4   0.1    0.0026       3.8      32      54 ..      87     109 ..      86     110 .. 0.94
   2 !   22.0   0.1   7.3e-08   0.00011      25      53 ..     117     145 ..     114     147 .. 0.91
   3 !   14.0   0.1   2.2e-05     0.033      33      54 ..     225     246 ..     224     247 .. 0.87

  Alignments for each domain:
  == domain 1  score: 7.4 bits;  conditional E-value: 0.0026
   EF-hand_8  32 frefDtdgdGkisfeEFcvller 54 
                 f+e D++gdG i++ E +v+l+r
  KOO21851.1  87 FDECDINGDGNIDLRELLVVLKR 109
                 8999***************9987 PP

  == domain 2  score: 22.0 bits;  conditional E-value: 7.3e-08
   EF-hand_8  25 eeevdilfrefDtdgdGkisfeEFcvlle 53 
                 ++++ +l+re+D d+dG+++f+EF vl+ 
  KOO21851.1 117 ADDLKTLIREVDVDEDGVLNFDEFSVLMR 145
                 678999*********************96 PP

  == domain 3  score: 14.0 bits;  conditional E-value: 2.2e-05
   EF-hand_8  33 refDtdgdGkisfeEFcvller 54 
                 +  D++gdG++sf+EF  ++++
  KOO21851.1 225 NQYDRNGDGRLSFDEFSKMATD 246
                 667*************999875 PP

>> EF-hand_5  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.4   0.1   5.7e-05     0.086       4      23 ..      86     105 ..      84     108 .. 0.86
   2 !   12.2   0.3   6.5e-05     0.097       2      25 .]     121     144 ..     120     144 .. 0.88
   3 ?   -4.0   0.3       8.6   1.3e+04       2       9 ..     181     188 ..     181     188 .. 0.86
   4 ?   -3.8   0.0       7.5   1.1e+04      12      21 ..     192     201 ..     192     201 .. 0.87
   5 !   21.5   0.1   7.3e-08   0.00011       5      24 ..     224     243 ..     220     244 .. 0.88

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 5.7e-05
                 HHHHH-SS-SSCE-HHHHHH CS
   EF-hand_5   4 tFqaiDlNgDGkIskeELkt 23 
                 +F++ D NgDG I+  EL  
  KOO21851.1  86 CFDECDINGDGNIDLRELLV 105
                 79999************965 PP

  == domain 2  score: 12.2 bits;  conditional E-value: 6.5e-05
                 HHHHHHH-SS-SSCE-HHHHHHHH CS
   EF-hand_5   2 kdtFqaiDlNgDGkIskeELktlv 25 
                 k + +++D++ DG ++++E+  l+
  KOO21851.1 121 KTLIREVDVDEDGVLNFDEFSVLM 144
                 667899**************8775 PP

  == domain 3  score: -4.0 bits;  conditional E-value: 8.6
                 HHHHHHH- CS
   EF-hand_5   2 kdtFqaiD 9  
                 +d+F+++D
  KOO21851.1 181 RDLFDKLD 188
                 589**999 PP

  == domain 4  score: -3.8 bits;  conditional E-value: 7.5
                 -SSCE-HHHH CS
   EF-hand_5  12 gDGkIskeEL 21 
                 +DG++ + EL
  KOO21851.1 192 RDGFLGPNEL 201
                 7***999997 PP

  == domain 5  score: 21.5 bits;  conditional E-value: 7.3e-08
                 HHHH-SS-SSCE-HHHHHHH CS
   EF-hand_5   5 FqaiDlNgDGkIskeELktl 24 
                 +++ D NgDG++s++E+ ++
  KOO21851.1 224 LNQYDRNGDGRLSFDEFSKM 243
                 79***************986 PP

>> Ion_trans  Ion transport protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.2  11.0   5.8e-09   8.6e-06      92     244 ..     817     961 ..     771     962 .. 0.72

  Alignments for each domain:
  == domain 1  score: 25.2 bits;  conditional E-value: 5.8e-09
                 HHHHHHHHHHGGGGGGHHHCHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCCCC...SCCSTSSSTTTSSSSSSHHHHHHHHH CS
   Ion_trans  92 llllsvlrlfrvlrllklisrleglrtlvtalirsvkdllnvlllllvvlfifaligvqlfkgklrekne...caktwenpnngntnFdnfftallwlf 187
                  ++l+v  ++ +l l+ +++ l++l +   ++++++ d ++++++l +vl+ fa  ++ l +  +    +    a   ++  ++++ ++ +++  lwl 
  KOO21851.1 817 DGALQVTLALSILNLVAIFKVLGPLLI---TVTQMLSDSVRFAVVLGIVLVGFANGFYSLIHFGV----SseyLASLSQGLSFDYSYMSIVSQMCLWLA 908
                 467778888888888888888888777...999****************************2222....122312222333455555556666666666 PP

                 HHHTTSSHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
   Ion_trans 188 rlmttegwgdilyatldekskvaliyfvifiilgsflllNlliaviadnfqeltere 244
                   ++ +  + + + ++ +      ++f +fi+ + f+llNllia+ +++++++t+++
  KOO21851.1 909 GGASLDMIEPLSPSVQLGA----SALFWSFIVTSYFVLLNLLIAIFNTAYERITSNS 961
                 6666665555555555555....9*****************************9875 PP

>> Ank_2  Ankyrin repeats (3 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.0   0.0    0.0028       4.2      11      75 ..     447     528 ..     437     536 .. 0.64
   2 !   20.4   0.0   3.8e-07   0.00057       2      74 ..     511     595 ..     509     602 .. 0.74
   3 ?   -0.3   0.0       1.1   1.7e+03      55      63 ..     739     747 ..     725     762 .. 0.66

  Alignments for each domain:
  == domain 1  score: 8.0 bits;  conditional E-value: 0.0028
       Ank_2  11 elvklLl.eg.adpn..k..ngktaLhyAakngnleivklLleh............adndgrtpLhyAarsghleivklLlek 75 
                 el+k  l +g adpn     +g  a+h A+ +g++ ++++L ++            +d    +  h+Aa++g+le++++L e+
  KOO21851.1 447 ELLKDVLaSGcADPNfpPtyWGGPAVH-ACFEGDVVALEMLRQAgcnlrqrlewllQDAPLFSLVHAAAFNGQLEVLQYLREH 528
                 556656654447777752467766666.6777755555777764545554544443334467777999999********9865 PP

  == domain 2  score: 20.4 bits;  conditional E-value: 3.8e-07
       Ank_2   2 hlAakngnlelvklLleg........adpnkngktaLhyAakngnlei..vklLleh......adndgrtpLhyAarsghleivklLle 74 
                 h Aa ng+le++++L e+        +d+  +  ++Lh+  ++  ++i  +++Ll        +++ gr+pL +A+ ++ +e++  Ll+
  KOO21851.1 511 HAAAFNGQLEVLQYLREHlppsvfreVDA--ELSNPLHTLLESS-RDIgaARFLLGVgvdgfaINKGGRSPLSMAI-ETMPELALELLN 595
                 778889*9*******95534444433333..4579***999985.466559****845445677799*********.588899999994 PP

  == domain 3  score: -0.3 bits;  conditional E-value: 1.1
       Ank_2  55 tpLhyAars 63 
                 tpL+yAa s
  KOO21851.1 739 TPLFYAATS 747
                 555555543 PP

>> EF-hand_4  Cytoskeletal-regulatory complex EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.3   0.3     0.013        19      46      74 ..      84     113 ..      73     123 .. 0.78
   2 !   15.5   0.4   8.1e-06     0.012      42      71 ..     117     146 ..     106     157 .. 0.86
   3 ?    1.8   0.0      0.15   2.3e+02      49      73 ..     224     249 ..     198     260 .. 0.75

  Alignments for each domain:
  == domain 1  score: 5.3 bits;  conditional E-value: 0.013
   EF-hand_4  46 ekiwdladidedgkldfeefciam.rlifd 74 
                 ++ +d +di+ dg++d+ e+ +++ rl +d
  KOO21851.1  84 KRCFDECDINGDGNIDLRELLVVLkRLELD 113
                 4566789************98776256555 PP

  == domain 2  score: 15.5 bits;  conditional E-value: 8.1e-06
   EF-hand_4  42 edklekiwdladidedgkldfeefciamrl 71 
                  d l+ +    d+dedg l+f+ef + mr 
  KOO21851.1 117 ADDLKTLIREVDVDEDGVLNFDEFSVLMRT 146
                 57788888889*****************96 PP

  == domain 3  score: 1.8 bits;  conditional E-value: 0.15
   EF-hand_4  49 wdladidedgkldfeefc.iamrlif 73 
                  +  d + dg+l f+ef  +a  li+
  KOO21851.1 224 LNQYDRNGDGRLSFDEFSkMATDLIW 249
                 55567889*********724444554 PP

>> EF-hand_9  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.3   0.2   8.2e-08   0.00012       2      64 ..      85     146 ..      84     147 .. 0.95

  Alignments for each domain:
  == domain 1  score: 22.3 bits;  conditional E-value: 8.2e-08
   EF-hand_9   2 tvFevcDtqktGrVpvsrlidyLravtaqdpeeseLeelakelDPdgedasvdldtflrvmre 64 
                 + F+ cD++  G++ + +l+ +L+      p+  +L +l +e+D d+  + +++d f + mr 
  KOO21851.1  85 RCFDECDINGDGNIDLRELLVVLKRLELDIPPADDLKTLIREVDVDED-GVLNFDEFSVLMRT 146
                 67******************************************9877.************95 PP

>> Ank_4  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.0       3.4     5e+03      10      28 ..      29      51 ..      22      61 .. 0.67
   2 ?   -0.0   0.0      0.96   1.4e+03      11      42 ..     443     475 ..     435     501 .. 0.81
   3 !    7.3   0.1    0.0049       7.3      36      54 ..     507     525 ..     482     526 .. 0.87
   4 ?    4.6   0.0     0.034        50       4      43 ..     544     583 ..     542     585 .. 0.90

  Alignments for each domain:
  == domain 1  score: -1.7 bits;  conditional E-value: 3.4
       Ank_4 10 i....sgrlelvrlLlekgadin 28
                +    s++l+l rlLle+  ++ 
  KOO21851.1 29 SggssSSNLQLSRLLLESASQPI 51
                455568999999****9854443 PP

  == domain 2  score: -0.0 bits;  conditional E-value: 0.96
       Ank_4  11 sgrlelvrlLlekg.adinaqdnrsGetalhiA 42 
                 ++rlel++  l++g ad+n  +   G +a+h +
  KOO21851.1 443 AERLELLKDVLASGcADPNFPPTYWGGPAVHAC 475
                 789999999999998999998778888888876 PP

  == domain 3  score: 7.3 bits;  conditional E-value: 0.0049
       Ank_4  36 etalhiAakrgnveilklL 54 
                 ++++h Aa +g++e+l++L
  KOO21851.1 507 FSLVHAAAFNGQLEVLQYL 525
                 5789**************9 PP

  == domain 4  score: 4.6 bits;  conditional E-value: 0.034
       Ank_4   4 aLhyaai.sgrlelvrlLlekgadinaqdnrsGetalhiAa 43 
                 +Lh + + s ++ ++r+Ll  g+d  a  n+ G+++l +A+
  KOO21851.1 544 PLHTLLEsSRDIGAARFLLGVGVDGFAI-NKGGRSPLSMAI 583
                 799999999999***************8.********8887 PP

>> Dockerin_1  Dockerin type I domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.2   1.5   5.1e-05     0.077       3      57 ..      91     147 ..      89     148 .. 0.84
   2 ?    2.5   0.0      0.12   1.7e+02      29      46 ..     219     236 ..     201     244 .. 0.82

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 5.1e-05
                 ETTSSSC-SHHHHHHHHHHCT..SSEBTTSCCCHGGGSTT-SSCESHHHHHHHHHHH CS
  Dockerin_1   3 DVNgDgkVnalDalliinyln..qregqssssngkaaDvNgDGrvnalDallvinyL 57 
                 D+NgDg+++   +l++ + l+    + +  ++  +  Dv++DG  n   ++++++ L
  KOO21851.1  91 DINGDGNIDLRELLVVLKRLEldIPPADDLKTLIREVDVDEDGVLNFDEFSVLMRTL 147
                 9********************765566667788999*******99988888887766 PP

  == domain 2  score: 2.5 bits;  conditional E-value: 0.12
                 TSCCCHGGGSTT-SSCES CS
  Dockerin_1  29 ssssngkaaDvNgDGrvn 46 
                   + + + +D NgDGr +
  KOO21851.1 219 DLKRRLNQYDRNGDGRLS 236
                 55677899*******976 PP

>> SPARC_Ca_bdg  Secreted protein acidic and rich in cysteine Ca binding region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.3   0.1     0.016        24      91     110 ..      84     103 ..      64     106 .. 0.87
   2 ?    5.8   0.3     0.011        17      60      77 ..      87     104 ..      80     143 .. 0.53
   3 ?    4.1   0.0     0.038        57      53     111 ..     175     241 ..     158     243 .. 0.75

  Alignments for each domain:
  == domain 1  score: 5.3 bits;  conditional E-value: 0.016
  SPARC_Ca_bdg  91 kpflescDadkdkkislkEw 110
                   k+ +++cD + d++i+l+E 
    KOO21851.1  84 KRCFDECDINGDGNIDLREL 103
                   6789*************996 PP

  == domain 2  score: 5.8 bits;  conditional E-value: 0.011
  SPARC_Ca_bdg  60 FsklDtnsdkvlsksELa 77 
                   F++ D n d+ ++ +EL 
    KOO21851.1  87 FDECDINGDGNIDLRELL 104
                   555555555555555543 PP

  == domain 3  score: 4.1 bits;  conditional E-value: 0.038
  SPARC_Ca_bdg  53 kepvawk..FsklDtn.sdkvlsksELapl.....raplvklehCikpflescDadkdkkislkEwc 111
                   +  v w+  F+klD   +d++l  +EL+        ++l +  +  k+ l++ D + d+++s  E+ 
    KOO21851.1 175 RRVVLWRdlFDKLDSLpRDGFLGPNELHIAfeqvgITSLTRGSKDLKRRLNQYDRNGDGRLSFDEFS 241
                   5667775559****999*********97531111123466677777888999999999999999986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1012 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       540  (0.0301188); expected 358.6 (0.02)
Passed bias filter:                      377  (0.0210274); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.67u 0.27s 00:00:00.94 Elapsed: 00:00:00.39
# Mc/sec: 7743.26
//
Query:       KOO21852.1  [L=441]
Description: iron zinc purple acid phosphatase-like protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.1e-16   62.0   1.0    3.5e-16   60.3   0.2    2.1  3  Metallophos      Calcineurin-like phosphoesterase
    5.1e-15   55.8   0.0    1.2e-14   54.7   0.0    1.6  1  Pur_ac_phosph_N  Purple acid Phosphatase, N-terminal domain
    1.9e-09   38.2   0.1    5.7e-09   36.7   0.1    1.8  1  Metallophos_C    Iron/zinc purple acid phosphatase-like prote
     0.0015   18.8   0.0     0.0062   16.7   0.0    1.8  1  Metallophos_2    Calcineurin-like phosphoesterase superfamily


Domain annotation for each model (and alignments):
>> Metallophos  Calcineurin-like phosphoesterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.0       1.5   6.8e+03     102     145 ..      80     122 ..      67     123 .. 0.69
   2 !   60.3   0.2   7.7e-20   3.5e-16       2     204 .]     127     322 ..     126     322 .. 0.75
   3 ?   -1.2   0.0      0.55   2.5e+03     156     172 ..     416     432 ..     391     440 .. 0.79

  Alignments for each domain:
  == domain 1  score: -2.7 bits;  conditional E-value: 1.5
                  EETSEEEEEETTEEEEEEEESECEEE.THHHHHHHHHHHSCHHHH CS
  Metallophos 102 fnnlplaslgsgslkvlllhGgspel.lvsldklgslnleleape 145
                   + + l +l  g  +++ + +gsp +  vs++++ s+++++++p+
   KOO21852.1  80 QSQVKLTGLKAG--TTYYYTAGSPAIqHVSWSEMYSFVMPDTSPT 122
                  445555666666..6666667778888888999888888887765 PP

  == domain 2  score: 60.3 bits;  conditional E-value: 7.7e-20
                  EEEEEESBTBTTCCTHHHHHHHHHHHHHHHTTESEEEEESTSSSSSHHHHHHHHHHHHHHHH.........TSEEEEEC-TTSCHHHHHHHHHHHHHH CS
  Metallophos   2 rilvigDlHlalgggqlddllkllddllreekpdlvllaGDlvdrgdlekellellaalvky.........pipvylllGNHegfeeellnkygylgi 90 
                  r+++++D +    + + ++l +l+  +      d+v++aGD+ ++ d++  + +  a   ++           p+++ +GNHe       n+  y ++
   KOO21852.1 127 RVAIFADFG----YFNSESLPALIAGAYTG-AYDWVIHAGDIAYDMDWDGGFGKIGAVGSEFllavepiaaTRPYMVSPGNHE----CANNFTHYRNR 215
                  7999****9....999999*****777555.99*************9999999997666666778888888999*********....55555555555 PP

                  H....HHHHEHHHCEEETSEEEEEETTEEEEEEEESECEEETHHHHHHHHHHHSCHHHHCC....HHHHHH.....HHHHTTCSEEEEEESSESSCSS CS
  Metallophos  91 f....sepwrsdaevfnnlplaslgsgslkvlllhGgspellvsldklgslnleleapepg....dewlkd.....lekrekadwvivlgHsplyrgs 175
                  f    + + +  ++  n +++++ g    +++ ++ +              ++e ++          wlk      + +r  ++w++++gH+  y   
   KOO21852.1 216 FaaltNFTAKASGSPSNLFYSFDSGLA--HYISIDTE-----------LFDEFEGDE---LvhnmLTWLKAdltkaNANRHIRPWLMAFGHKCSY--- 294
                  543334444444555566666665556..55555555...........111222222...13335889988999999******************... PP

                  SCSCCHHHHHHHHHHTTESEEEEESSSSE CS
  Metallophos 176 gylfgdealedllkkygvdlvisGHtHvy 204
                      ++  +e l++ ygvd++++GH+H y
   KOO21852.1 295 -MAQNSSLWESLFYSYGVDMYFCGHVHSY 322
                  .77888888899***************86 PP

  == domain 3  score: -1.2 bits;  conditional E-value: 0.55
                  HHTTCSEEEEEESSESS CS
  Metallophos 156 krekadwvivlgHsply 172
                  k++++ wviv +H p +
   KOO21852.1 416 KFSDDLWVIVDNHGPRT 432
                  667899*******9977 PP

>> Pur_ac_phosph_N  Purple acid Phosphatase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.7   0.0   2.6e-18   1.2e-14       1      93 [.      21     115 ..      21     116 .. 0.91

  Alignments for each domain:
  == domain 1  score: 54.7 bits;  conditional E-value: 2.6e-18
  Pur_ac_phosph_N   1 peqvhlsltedtstsmtvsWitpekt..kksvvrygtssdalestaeatsstyettnyksgyshkatltgLepgttYyYrvgddeg...gwSev 89 
                      p+q+hl++++  ++s++v + t++++  +++ v +gts+ al++ ++a+s  y       +++ +++ltgL++gttYyY  g+       wSe 
       KOO21852.1  21 PHQIHLAFGG-EPDSIAVDFATDADVncTSTGVAFGTSPAALNMFVPASSCYY--FAGALQWQSQVKLTGLKAGTTYYYTAGSPAIqhvSWSEM 111
                      89********.***********9965447889***************998754..68999************************77789***** PP

  Pur_ac_phosph_N  90 ysfk 93 
                      ysf 
       KOO21852.1 112 YSFV 115
                      ***6 PP

>> Metallophos_C  Iron/zinc purple acid phosphatase-like protein C
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.7   0.1   1.3e-12   5.7e-09       1      54 [.     352     405 ..     352     413 .. 0.80

  Alignments for each domain:
  == domain 1  score: 36.7 bits;  conditional E-value: 1.3e-12
  Metallophos_C   1 ApvhiviGaAGndegdafkg.eppqpewsafrstdyGygrltvhNathLlwefvr 54 
                    A v iv+GaAG++e  a    ++++++ s    ++yG+g+l++ Nath++w++ +
     KOO21852.1 352 AVVPIVTGAAGCQEPPAA-HcNNDPKSTSPSYCGNYGFGILEIANATHAHWTWNT 405
                    7899**********9333.2355556777555688*****************966 PP

>> Metallophos_2  Calcineurin-like phosphoesterase superfamily domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.0   1.4e-06    0.0062       3     129 ..     128     321 ..     127     326 .. 0.67

  Alignments for each domain:
  == domain 1  score: 16.7 bits;  conditional E-value: 1.4e-06
  Metallophos_2   3 laiiSDlH.snldaleavlealkevgvdaiihaGD.....leeeep............e...vleellelapvlaVrGNnD............... 62 
                    +ai++D+   n + l+a+++ +   ++d +ihaGD                       e   ++e + + +p  + +GN++               
     KOO21852.1 128 VAIFADFGyFNSESLPALIAGAYTGAYDWVIHAGDiaydmD----WdggfgkigavgsEfllAVEPIAATRPYMVSPGNHEcannfthyrnrfaal 219
                    66777776556677777888777788*********555550....3555555555554322366666666699999*****999999999888888 PP

  Metallophos_2  63 .................................eev.veedvlreaaelgtdlp.eeaelelagekvlliHgdplgvkdalaellke..aeegsdv 121
                                                     +e   +e v++  + l+ dl+ + a+  ++ + +++ H+   ++++++++l ++   ++g+d+
     KOO21852.1 220 tnftakasgspsnlfysfdsglahyisidtelfDEFeGDELVHNMLTWLKADLTkANANRHIRPWLMAFGHKC--SYMAQNSSLWESlfYSYGVDM 313
                    8888888888888888888877766666555553333444445555555555543555555677778888888..55555555544444479999* PP

  Metallophos_2 122 vvcGHtHv 129
                    ++cGH H 
     KOO21852.1 314 YFCGHVHS 321
                    *******6 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (441 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       273  (0.0152267); expected 358.6 (0.02)
Passed bias filter:                      230  (0.0128284); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.47u 0.20s 00:00:00.67 Elapsed: 00:00:00.37
# Mc/sec: 3566.00
//
Query:       KOO21853.1  [L=279]
Description: short-chain dehydrogenase reductase sdr [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.6e-49  167.4   1.2    3.7e-49  166.9   1.2    1.2  1  adh_short      short chain dehydrogenase
    7.3e-34  117.3   3.5    9.8e-34  116.9   3.5    1.2  1  adh_short_C2   Enoyl-(Acyl carrier protein) reductase
    1.2e-09   38.4   0.5    1.6e-09   37.9   0.5    1.2  1  KR             KR domain
  ------ inclusion threshold ------
      0.021   14.1   0.4       0.33   10.2   0.0    2.7  3  THF_DHG_CYH_C  Tetrahydrofolate dehydrogenase/cyclohydrolase,
      0.065   12.7   0.1       0.12   11.8   0.1    1.6  1  Epimerase      NAD dependent epimerase/dehydratase family


Domain annotation for each model (and alignments):
>> adh_short  short chain dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  166.9   1.2     1e-52   3.7e-49       1     186 [.      18     207 ..      18     212 .. 0.97

  Alignments for each domain:
  == domain 1  score: 166.9 bits;  conditional E-value: 1e-52
                 SEEEEESTTSHHHHHHHHHHHHTT-EEEEEESCHHHHHHHHHHHHHT...TSEEEEEE-TTTSHHHHHHHHHHHHHHHSSESEEEE---S.S--SSGGG CS
   adh_short   1 kvvlvtGassGIGraiakelakeGakvvvvdrseekleevakelkee...gakalaiqvDvtdreevealvekavkklgkldvLvnNAGi.tgsgpfse 95 
                 +v+l+tGas+GIG a+a ++a++Ga +v+++r+ e+l+++ + lke+     + +++++Dv+d +++eal ++    + ++++LvnNAG+  g++ +++
  KOO21853.1  18 QVALITGASAGIGEACAWRFAEAGAVLVLIGRRTERLATLSAALKEAypsIVEPHCVTLDVQDVAAIEALPAQLPPAYANVNILVNNAGLaLGVAGAAD 116
                 69*********************************************87667789***********************************888899999 PP

                 CSHHHHHHHHHHHTHHHHHHHHHHHHHHHHCTTEEEEEEEEGGGTSB-TTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBSSHH CS
   adh_short  96 lseeewervievNltgvflltravlpamlkqssGrIvnvsSvagkvpvagvaaYsAsKaavagltrslakelaptgirvnavaPGlvdTdm 186
                  + +++ ++i++N+tg++  + a+lp m ++ sG+ +n++S+ag++++ag+++Y+A+K av+++t++++++l  t irv+a+ PG+v+Td+
  KOO21853.1 117 NKMSDVAQMISTNVTGLIAFCSAFLPGMRARGSGHLINIGSIAGHEAYAGGSVYCATKYAVNAFTMAARHDLVGTPIRVTAISPGMVKTDF 207
                 99999************************************************************************************97 PP

>> adh_short_C2  Enoyl-(Acyl carrier protein) reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  116.9   3.5   2.7e-37   9.8e-34       1     189 [.      24     219 ..      24     243 .. 0.89

  Alignments for each domain:
  == domain 1  score: 116.9 bits;  conditional E-value: 2.7e-37
                   TTTTSHHHHHHHHHHHTT-EEEEEESSGGH.HHHHHHHHHHTTSEE....EE--TTSHHHHHHHHHHHHHHHSSEEEEEE-----EGCSS-GGGH-H CS
  adh_short_C2   1 GaasgIGraiAkalaeeGaevvltdlneea.kkrveelaeelgaev....lecDVtdeeqvealveevvekfgklDilvnnagiapklkgpfletsr 92 
                   Ga  gIG+a+A ++ae+Ga +vl  ++ e+ +   ++l+e++++ v    + +DV+d +++eal +++   + +++ilvnnag a    + +++ + 
    KOO21853.1  24 GASAGIGEACAWRFAEAGAVLVLIGRRTERlATLSAALKEAYPSIVephcVTLDVQDVAAIEALPAQLPPAYANVNILVNNAGLALG-VAGAADNKM 119
                   899***********************999978888888888886656667************************************9.7888***** PP

                   HHHHHHHHHHTHHHHHHHHHHHH.HCTSC.CEEEEEEEGGGTSBSTTTTHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEE--BHCTG.GGGSTTHH CS
  adh_short_C2  93 eefdraldvnlyslfllakaalp.lmkeg.gsivnlssvgaervvpnynaygaaKaalealtrylAvelgpkgiRvNavspgpikTla.asgikgfd 186
                   +++++++++n+++l++++ a+lp + ++g g ++n+ s++++ + ++ ++y+a+K a++a+t ++ ++l    iRv a+spg++kT+  + ++ g +
    KOO21853.1 120 SDVAQMISTNVTGLIAFCSAFLPgMRARGsGHLINIGSIAGHEAYAGGSVYCATKYAVNAFTMAARHDLVGTPIRVTAISPGMVKTDFsVVRFGGDQ 216
                   ***********************555556899******************************************************98444444444 PP

                   HHH CS
  adh_short_C2 187 ell 189
                   +  
    KOO21853.1 217 ATA 219
                   444 PP

>> KR  KR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.9   0.5   4.6e-13   1.6e-09       3     164 ..      20     185 ..      18     204 .. 0.89

  Alignments for each domain:
  == domain 1  score: 37.9 bits;  conditional E-value: 4.6e-13
                 EEEETTTSHHHHHHHHHHHHHHS-EEEEE-SS..--HHHHHHHHHHHHTT-EEEE----TT-HHHHHHHHHHHHHHSS---EEEE----.-----TTT- CS
          KR   3 ylitGGlGgLGlelarwlaekgarhlvllsRsaaadedskaliaelealgaevevvaaDvsdkdavealleeikaeeppikGvihaAgv.lrdklleem 100
                  litG+  g+G + a   ae ga  lvl++R+ +  ++ +a ++e   + +e ++v +Dv d +a+eal +++    ++++  ++ Ag+ l  +  ++ 
  KOO21853.1  20 ALITGASAGIGEACAWRFAEAGA-VLVLIGRRTERLATLSAALKEAYPSIVEPHCVTLDVQDVAAIEALPAQLPPAYANVNILVNNAGLaLGVAGAADN 117
                 69*************99999998.599*****888899999999999999***********************************999726789999** PP

                 -HHHHHHHHTTTTHHHHHHHHHTTT....S--SEEEEEEEHHHHH--TT-HHHHHHHHHHHHHHHHHH CS
          KR 101 taedleqvlapKvkGawnLhelled....esldffvlfSSiagllgsagqanYaaaNaflDalaeyrr 164
                 +++d++q+++  v+G+     ++ +    +   +++ + Siag    ag + Y a+   ++a+    r
  KOO21853.1 118 KMSDVAQMISTNVTGLIAFCSAFLPgmraRGSGHLINIGSIAGHEAYAGGSVYCATKYAVNAFTMAAR 185
                 *********************998877778899***********************999999965443 PP

>> THF_DHG_CYH_C  Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.0   9.3e-05      0.33      31      76 ..      12      57 ..       9      77 .. 0.91
   2 ?   -0.2   0.1      0.15   5.5e+02      91     122 ..     196     227 ..     168     239 .. 0.69
   3 ?   -0.6   0.1      0.21   7.4e+02      74      90 ..     245     261 ..     233     267 .. 0.81

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 9.3e-05
                   T---TT-EEEEE---TTTHHHHHHHHHCTT-EEEEE-TTSCCHHHH CS
  THF_DHG_CYH_C 31 gielegkkvvvvGrsnivgkplallLleknatVtvchsktkdlaei 76
                   + +++g+ +++ G+s  +g++ a+ ++e++a+  ++ ++t+ la++
     KOO21853.1 12 TLDISGQVALITGASAGIGEACAWRFAEAGAVLVLIGRRTERLATL 57
                   6799************************************999865 PP

  == domain 2  score: -0.2 bits;  conditional E-value: 0.15
                    T-B-GGGS-TT-EEEE---EEC-TTEEE-SB- CS
  THF_DHG_CYH_C  91 elikaemvkegavviDvGinrvekgklvGDvd 122
                      i+  mvk++  v+  G ++ + +k++ D++
     KOO21853.1 196 TAISPGMVKTDFSVVRFGGDQATADKVYEDIE 227
                    45666777777777777777777777766665 PP

  == domain 3  score: -0.6 bits;  conditional E-value: 0.21
                    HHHHCCSSEEEE-SS-T CS
  THF_DHG_CYH_C  74 aeitreadivvvavGkp 90 
                    +++++ ad++v a+ ++
     KOO21853.1 245 PKHVQIADLIVLATNQA 261
                    68999999999998765 PP

>> Epimerase  NAD dependent epimerase/dehydratase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.1   3.3e-05      0.12       1      67 [.      20      95 ..      20     193 .. 0.76

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 3.3e-05
                EEEETTTSHHHHHHHHHHHHCTSEEEEEES-STTTTCHHCHHC.........EEEE--TT-HHHHHHHHHHHT-SE CS
   Epimerase  1 ilVtGatGfiGsalvkallekgyevigldrlssasntarledl.........elveldltdrsalerlfkeeqpda 67
                +l+tGa+  iG a + +++e+g  ++ + r++++ +t + + +         + v+ld+ d +a+e+l ++  p +
  KOO21853.1 20 ALITGASAGIGEACAWRFAEAGAVLVLIGRRTERLATLSAALKeaypsivepHCVTLDVQDVAAIEALPAQLPPAY 95
                59********************99999999976666655554499**********************999876654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (279 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       351  (0.0195772); expected 358.6 (0.02)
Passed bias filter:                      249  (0.0138881); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.41u 0.23s 00:00:00.64 Elapsed: 00:00:00.37
# Mc/sec: 2236.41
//
Query:       KOO21854.1  [L=433]
Description: adenosine 3 -phospho 5 -phosphosulfate transporter 1-like protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.7e-56  191.6  23.8    2.4e-56  191.1  23.8    1.1  1  UAA       UAA transporter family
     0.0083   16.3  16.8     0.0083   16.3  16.8    3.1  3  EamA      EamA-like transporter family
  ------ inclusion threshold ------
      0.013   14.2   0.5      0.022   13.5   0.5    1.4  1  Ndr       Ndr family
      0.037   13.4  16.7       0.09   12.1  16.6    1.7  1  TPT       Triose-phosphate Transporter family


Domain annotation for each model (and alignments):
>> UAA  UAA transporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  191.1  23.8   5.4e-60   2.4e-56       3     298 ..      79     373 ..      77     376 .. 0.92

  Alignments for each domain:
  == domain 1  score: 191.1 bits;  conditional E-value: 5.4e-60
         UAA   3 llavslvfvgccsnvvllElivkeepkafg......nlltfvq.....flfvalegllesidilkkrkiPlktYvilvalffitsvlnnealkydisvP 90 
                  ++  +++v+++ ++ ++E+i+++ +   g       +l+f++     f++ a++ ++ +  ++  + +Pl+++   ++ ++++sv+++ealk+ +s+P
  KOO21854.1  79 TVCSVGIQVSYLLWGLMQERIMTKPYET-GelfrssKFLVFANrilalFAAWAMMCYTGEPVVRCANGAPLYKFSYSSVSNIMSSVCQYEALKF-VSFP 175
                 68999******************66655.888899999999998765555555555544444799*****************************.**** PP

         UAA  91 vhiifrssklipvmilGililgkrYsllqylsvllltlGviiftllsakdkkedskeslnkfllGiallvlallldavlglvqeklykkygkhskealf 189
                 ++++++s+k++p+m++G +++++    ++y++++ +t+G+ +f l++++d        +n+ l+Gi+l++++++ d++++++q +++k+y+ +s  +++
  KOO21854.1 176 TQVLAKSCKMVPTMLMGYVVSRRVHACFEYVVAMGVTAGAAMFKLFETNDA-----PVKNTELWGIILITVYMVRDSFTSNWQSAVFKEYKVSSTAMML 269
                 *********************************************999665.....445678************************************* PP

         UAA 190 yshllslplfl...llqgellsavkflsesedvallslpsklfylllnvltqyvcikgVlilisefgaltvtlvltlRKfvslllSillFknpltlqhl 285
                 y +l+s  ++    +l+ e ++ ++fl +++++         ++++  +++++v++ +++++i++fg  +++++ t+R+f+s++lSil+F +p+ l   
  KOO21854.1 270 YANLFSSAFTAlglVLTLEGVTVYAFLVANPSCV--------LHIVTMAICSAVGQLFIFYTIKRFGPVAFATIQTVRQFLSVVLSILFFAHPINLMMG 360
                 ******99987687999****************9........8******************************************************** PP

         UAA 286 vgtllVflgllly 298
                 +g ++Vfl+l ++
  KOO21854.1 361 CGIAIVFLSLGAE 373
                 ********99875 PP

>> EamA  EamA-like transporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.0      0.77   3.5e+03      34      55 ..       7      28 ..       3      47 .. 0.62
   2 !    4.6   0.6    0.0075        33      68     134 ..     151     217 ..     110     219 .. 0.81
   3 !   16.3  16.8   1.9e-06    0.0083       2     132 ..     234     370 ..     233     372 .. 0.76

  Alignments for each domain:
  == domain 1  score: -1.9 bits;  conditional E-value: 0.77
        EamA 34 tfvrfliagillliiallkegk 55
                ++++  ++++ l++++ ++  k
  KOO21854.1  7 FTYTVSFGSFYLFVLISFQMVK 28
                4455555666665555555544 PP

  == domain 2  score: 4.6 bits;  conditional E-value: 0.0075
        EamA  68 lllgllgtvlafllffyalkktsasnaslitslePvftlilsvlllgekltlkqllgivlillGvll 134
                 + ++ +++++  ++++ alk +s  + +l+ s   v t+++++++ +     ++++ ++ + +G+++
  KOO21854.1 151 FSYSSVSNIMSSVCQYEALKFVSFPTQVLAKSCKMVPTMLMGYVVSRRVHACFEYVVAMGVTAGAAM 217
                 556678999999********************************99988888888888888888876 PP

  == domain 3  score: 16.3 bits;  conditional E-value: 1.9e-06
        EamA   2 lgillallaalfwaiyfvlskillrkv..spltltfvrfl..iagillliiallkegkl.aklslkdwlll.lllgllgtvlafllffyalkktsasna 94 
                 +gi+l+ + ++  +++   + ++++++  s+ ++  +  l   a+ +l +++ l++ +  a l  ++   l +++ ++++++++l++fy +k+ ++   
  KOO21854.1 234 WGIILITVYMVRDSFTSNWQSAVFKEYkvSSTAMMLYANLfsSAFTALGLVLTLEGVTVyAFLVANPSCVLhIVTMAICSAVGQLFIFYTIKRFGPVAF 332
                 777777777777777777777777777333344444444411444444555555555558777777777777888889********************* PP

        EamA  95 slitslePvftlilsvlllgekltlkqllgivlillGv 132
                 + i+++   ++++ls+l++  +++l+  +gi++++l++
  KOO21854.1 333 ATIQTVRQFLSVVLSILFFAHPINLMMGCGIAIVFLSL 370
                 ***********************************986 PP

>> Ndr  Ndr family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.5   4.8e-06     0.022      97     172 ..     202     276 ..     170     311 .. 0.79

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 4.8e-06
                 T---EEEEEETHHHHHHHHHHHH....SGGGEEEEEEES---S---HHHHHHHHHH.......TTTS-HHHHHHHHHS-H CS
         Ndr  97 klksviglGvgaGAyilarfalk....hperveglvLinitskaagwvewakeKlsskllkkvgltdllkdlllahkFgk 172
                  +++v+++Gv+aGA +  +f  +     +  + g++Li +        +++ + + s ++k++++++++  +l a +F+ 
  KOO21854.1 202 CFEYVVAMGVTAGAAMFKLFETNdapvKNTELWGIILITVYMVR----DSFTSNWQSAVFKEYKVSSTAM-MLYANLFSS 276
                 5799****************8773222456799*****998765....5566666666777777776553.666667765 PP

>> TPT  Triose-phosphate Transporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1  16.6     2e-05      0.09      96     282 ..     179     366 ..     118     371 .. 0.70

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 2e-05
         TPT  96 tvKasePiFtvilsrlllgeklsllvylsLlpivgGvalasvtEls......FnligfisAlisnltfslrnifsKkllkklkdldalnlfaiit.ils 187
                   K+++ + t ++  ++ + +     y+  + + +G a+  + E +       +l g+i  ++  + +s+ +++   ++k++k ++++ ++ +   + s
  KOO21854.1 179 LAKSCKMVPTMLMGYVVSRRVHACFEYVVAMGVTAGAAMFKLFETNdapvknTELWGIILITVYMVRDSFTSNWQSAVFKEYK-VSSTAMMLYANlFSS 276
                 34777777777777777777777777777777777777777766542221112344444444444556666666667777765.444444444440456 PP

         TPT 188 lllllPvallvegvlktpsllkstkvslkevllllllsgvlfhlynqvaymvLervspvthsvantvKrvvvIvlsvlvfknpvsllnaiGtava 282
                 ++  l ++l +egv++    ++   v++ + +l++++ +++  + +   + +++r  pv+++   tv++ +++vls+l+f  p++l+   G a++
  KOO21854.1 277 AFTALGLVLTLEGVTV----YAFL-VANPSCVLHIVTMAICSAVGQLFIFYTIKRFGPVAFATIQTVRQFLSVVLSILFFAHPINLMMGCGIAIV 366
                 7788999999999333....3333.3457999*****************************************************9987777765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (433 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       579  (0.032294); expected 358.6 (0.02)
Passed bias filter:                      246  (0.0137208); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.46u 0.24s 00:00:00.70 Elapsed: 00:00:00.37
# Mc/sec: 3479.04
//
Query:       KOO21855.1  [L=413]
Description: flap endonuclease 1-like protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    7.8e-29  100.1   0.0    1.4e-28   99.3   0.0    1.4  1  XPG_N         XPG N-terminal domain
    5.7e-28   97.1   0.1    1.2e-27   96.1   0.1    1.6  1  XPG_I         XPG I-region
     0.0039   17.8   0.0     0.0089   16.6   0.0    1.6  1  5_3_exonuc    5'-3' exonuclease, C-terminal SAM fold
  ------ inclusion threshold ------
      0.013   15.4   0.0      0.052   13.5   0.0    1.8  1  5_3_exonuc_N  5'-3' exonuclease, N-terminal resolvase-like do
      0.058   13.5   0.1       0.19   11.8   0.1    1.8  1  HHH_2         Helix-hairpin-helix motif
       0.07   13.7   1.2       0.56   10.9   0.1    2.8  3  HHH_5         Helix-hairpin-helix domain


Domain annotation for each model (and alignments):
>> XPG_N  XPG N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   99.3   0.0   4.6e-32   1.4e-28       1     101 []       1     109 [.       1     109 [. 0.95

  Alignments for each domain:
  == domain 1  score: 99.3 bits;  conditional E-value: 4.6e-32
                 X--TTHHHHHHHH-..GEEEEEGGGGTTEEEEEEHHHHHHHHHHHSE.ETTE.E-BS.....-HHHHHHHHHHHHHHHTTEEEEEEE--S--GGGHHHH CS
       XPG_N   1 MGikgLlkllkeva..airsvsiealegkklaiDaslwlyrfliavreqlgn.alen.....tshlmglfsrllrlldfgikPifVFdgkapdlkkeel 91 
                 MGikgL +++++ a  ai++ ++ea  g ++aiDas+ ly+fl+avr+ +++ +l+n     tsh++g++sr+l+ll+ gikP++VFdgk+p+lk ++l
  KOO21855.1   1 MGIKGLFPFISDAAplAIKETKLEAMTGLTIAIDASMCLYQFLVAVRQGEAQsNLSNasgevTSHIQGFLSRTLKLLEAGIKPVYVFDGKPPELKLQTL 99 
                 ***********************************************9777625666999*************************************** PP

                 HHHHHHHHHH CS
       XPG_N  92 ekrserrqea 101
                 + r+e+++ea
  KOO21855.1 100 AGRKEKKDEA 109
                 ******9885 PP

>> XPG_I  XPG I-region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   96.1   0.1   4.1e-31   1.2e-27       1      94 []     148     239 ..     148     239 .. 0.94

  Alignments for each domain:
  == domain 1  score: 96.1 bits;  conditional E-value: 4.1e-31
                 HHHT--EEE-SS-HHHHHHHHHHTTSSSEEE-SSSHHHHTT-SEEEESTT.ECECTT..EEECEEEEEEHHHHHHHHT--HHHHHHHHHHHCET CS
       XPG_I   1 klmgipyvvApgEAEAqcayLqkkglvdaviseDsDlllFGapkvlrnlskkkskkkkekekkkvevidlekvlkelgltreqlidlaillgcD 94 
                 +l+g p++ Ap+EAEA ca+L+k+g+v+av++eD+D+l+FGa ++l+nl+  + +++++++k++v +i+le +l +l+++++ +id++il+gcD
  KOO21855.1 148 RLLGCPVILAPSEAEATCAALNKSGHVHAVATEDMDALTFGAVTMLKNLF--DTESSRTQTKRPVFEIKLEALLAQLDVSMDVFIDFCILCGCD 239
                 589***********************************************..44444578999******************************9 PP

>> 5_3_exonuc  5'-3' exonuclease, C-terminal SAM fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   0.0     3e-06    0.0089       6      49 ..     229     270 ..     224     291 .. 0.81

  Alignments for each domain:
  == domain 1  score: 16.6 bits;  conditional E-value: 3e-06
  5_3_exonuc   6 iidlkaLvGDssDnipGvpgiGektAakLlkeygsleeilenld 49 
                 +id+  L+G   D    ++g+G+ tA kLlk++gs+e+  ++l 
  KOO21855.1 229 FIDFCILCG--CDYCGTIRGVGPTTAFKLLKTHGSIEAAAASLG 270
                 566666666..5777789********************998775 PP

>> 5_3_exonuc_N  5'-3' exonuclease, N-terminal resolvase-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.0   1.7e-05     0.052       5     134 ..      33     188 ..      30     212 .. 0.69

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 1.7e-05
  5_3_exonuc_N   5 iDgsslifRayyal........lttsdgeptnavygflnmllklleeekpthlavvfDakkktfRhelypeYKanR..................... 72 
                   iD+s  +++   a+        l++++ge t+ + gfl+  lklle     + + vfD k+++ + + ++  K++                      
    KOO21855.1  33 IDASMCLYQFLVAVrqgeaqsnLSNASGEVTSHIQGFLSRTLKLLEAGI--KPVYVFDGKPPELKLQTLAGRKEKKdeadselaralasgdpeeirk 127
                   89999999988888889988889999********************743..4699***999999999999999999666666666666666665555 PP

  5_3_exonuc_N  73 ..eetpeelkeqlplikevlealgikvlevegyEADDvigtlakraeeegvvivsgDkDllQlv 134
                     + t ++  +  + ++e+l+ lg +v+ ++  EA    ++l k+ +     + ++D D+l   
    KOO21855.1 128 aaHRTARATPQMNADCQELLRLLGCPVI-LAPSEAEATCAALNKSGHV--HAVATEDMDALTFG 188
                   5333333333333456666666677777.4445777666666665332..35777777776655 PP

>> HHH_2  Helix-hairpin-helix motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.1   6.4e-05      0.19       8      28 ..     244     264 ..     242     275 .. 0.92

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 6.4e-05
       HHH_2   8 IrhVGektAklLakrFkslda 28 
                 Ir VG +tA +L k  +s++a
  KOO21855.1 244 IRGVGPTTAFKLLKTHGSIEA 264
                 9******************98 PP

>> HHH_5  Helix-hairpin-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.0       1.9   5.7e+03      15      24 ..      73      82 ..      71      86 .. 0.83
   2 ?   -0.4   0.1      0.62   1.9e+03      27      39 ..     115     127 ..     110     135 .. 0.68
   3 ?   10.9   0.1   0.00019      0.56       7      28 ..     244     264 ..     242     277 .. 0.77

  Alignments for each domain:
  == domain 1  score: -2.0 bits;  conditional E-value: 1.9
                HHHHHTTT-- CS
       HHH_5 15 AlallsaGie 24
                 l+ll+aGi+
  KOO21855.1 73 TLKLLEAGIK 82
                699*****97 PP

  == domain 2  score: -0.4 bits;  conditional E-value: 0.62
                 HHHHHS-HHHHHT CS
       HHH_5  27 edlaaadveeLak 39 
                  +la+ d+ee+ k
  KOO21855.1 115 RALASGDPEEIRK 127
                 3566677777665 PP

  == domain 3  score: 10.9 bits;  conditional E-value: 0.00019
                 STT--HHHHHHHHTTT--SHHH CS
       HHH_5   7 vsGiGpktAlallsaGiesved 28 
                 + G+Gp tA +ll++  +s+e+
  KOO21855.1 244 IRGVGPTTAFKLLKT-HGSIEA 264
                 89*************.555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (413 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       741  (0.0413297); expected 358.6 (0.02)
Passed bias filter:                      582  (0.0324614); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.50u 0.22s 00:00:00.72 Elapsed: 00:00:00.38
# Mc/sec: 3217.23
//
Query:       KOO21856.1  [L=338]
Description: 3-beta hydroxysteroid dehydrogenase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      1e-26   94.0   0.0    1.4e-26   93.5   0.0    1.2  1  NAD_binding_10   NAD(P)H-binding
    5.3e-05   22.8   0.1    0.00014   21.4   0.1    1.7  2  Epimerase        NAD dependent epimerase/dehydratase family
    0.00018   20.6   0.0    0.00025   20.2   0.0    1.2  1  3Beta_HSD        3-beta hydroxysteroid dehydrogenase/isomeras
     0.0002   21.0   0.1    0.00049   19.7   0.1    1.6  2  NmrA             NmrA-like family
    0.00076   19.6   0.1     0.0044   17.1   0.1    2.1  2  DapB_N           Dihydrodipicolinate reductase, N-terminus
     0.0023   18.2   0.1     0.0041   17.4   0.1    1.4  1  Sacchrp_dh_NADP  Saccharopine dehydrogenase NADP binding doma
     0.0055   15.9   0.0       0.16   11.2   0.1    2.2  2  NAD_binding_4    Male sterility protein
  ------ inclusion threshold ------
      0.014   15.2   0.0      0.035   13.9   0.0    1.6  1  TrkA_C           TrkA-C domain
       0.14   11.6   0.1       0.23   10.9   0.1    1.4  1  adh_short        short chain dehydrogenase


Domain annotation for each model (and alignments):
>> NAD_binding_10  NAD(P)H-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   93.5   0.0   7.3e-30   1.4e-26       1     184 []      13     220 ..      13     220 .. 0.75

  Alignments for each domain:
  == domain 1  score: 93.5 bits;  conditional E-value: 7.3e-30
                     TTTSHHHHHHHHHHHHC-..T-EEEEEETTHHHC.HHHHCTTTCEEEE--TT-...CCHHHHHHTT-SEEEES---TCCHHHH........HHHH CS
  NAD_binding_10   1 GAtGkvGrllvkellarg..ghevtalvRnpekl.aeleaeeglevvegdvtd...vedlaealkgadaVvsalggggkdeeg........akni 81 
                     GAtG+vGrl+v++ll+r+   ++v+a+vR+ +k+ + l+++ ++e+v  d+ +   ++++++  +gadaV+++++g + d +          +++
      KOO21856.1  13 GATGRVGRLVVQRLLQREgtATTVRAVVRDGAKAlEVLPRDGRIELVFCDLASddcAAAIKRMSEGADAVIWCASGFKPDGTLididgvteFAKA 107
                     9*****************88889*******77763668899**********96333356666667*********998885555665666664444 PP

                     HHHHHHCT.--EEEEEEETTTTSGCGCHHHH..........HHHHCCHHHHHHHHHHHHHHHHSSSEEEEEEE-CEE-S.T--SEEEEETTSS-- CS
  NAD_binding_10  82 vdaakeag.vkRfvlvsaigvgdevpgefge..........wnkellkaylaakraaeellrasgldwTivrpggLtde.pttkyrvvekgepfk 164
                      d  +++g   ++vl+s++gv + +++e +           + + + +a+l++k  ae+ lr+ g  + ivrp+gL+d  p+++  ++++g+   
      KOO21856.1 108 FDNGNASGnAPKVVLCSSAGVSRPQWSEEKMkklvgaadipIIRLNPGAILDKKMVAEAKLREGGAPYCIVRPTGLKDTwPAGR-PILSQGDVAV 201
                     4444444439***********985444322111221121112334678889***************************946665.5666666655 PP

                     --EEEHHHHHHHHHHHCTXG CS
  NAD_binding_10 165 ggsisradVAdvlvavlddp 184
                      g+++ +d+A+vlv++l++p
      KOO21856.1 202 -GRTNPDDLAEVLVSCLEEP 220
                     .478*************997 PP

>> Epimerase  NAD dependent epimerase/dehydratase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.4   0.1   7.1e-08   0.00014       1      73 [.       9      87 ..       9     103 .. 0.75
   2 ?   -3.2   0.0       2.4   4.7e+03     157     170 ..     168     181 ..     161     183 .. 0.74

  Alignments for each domain:
  == domain 1  score: 21.4 bits;  conditional E-value: 7.1e-08
                EEEETTTSHHHHHHHHHHHHCT...SEEEEEES-STTTTCHHCHHC......EEEE--TT-HHHHHHHHHHH.T-SEEEE--S CS
   Epimerase  1 ilVtGatGfiGsalvkallekg...yevigldrlssasntarledl......elveldltdrsalerlfkee.qpdavihlAa 73
                ++V+GatG +G+ +v++ll++     +v ++ r+  +  +     l      elv +dl  +++ +++ +   ++davi +A 
  KOO21856.1  9 VVVAGATGRVGRLVVQRLLQREgtaTTVRAVVRDGAKALEV----LprdgriELVFCDLASDDCAAAIKRMSeGADAVIWCAS 87
                68*****************9997754577777774433333....2344699*******99995555554445******9986 PP

  == domain 2  score: -3.2 bits;  conditional E-value: 2.4
                 HHHHT-EEEEEEES CS
   Epimerase 157 aaqyglnaiilrlf 170
                  +++g +++i+r++
  KOO21856.1 168 LREGGAPYCIVRPT 181
                 467799******97 PP

>> 3Beta_HSD  3-beta hydroxysteroid dehydrogenase/isomerase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.2   0.0   1.2e-07   0.00025       1      76 [.      10      88 ..      10     140 .. 0.82

  Alignments for each domain:
  == domain 1  score: 20.2 bits;  conditional E-value: 1.2e-07
   3Beta_HSD  1 vvtGgaGFlGralvkeLvrlee.lkevrvlDlrespelleelskvnvkkviegDvtdkdk...leealegvdvvihlasl 76
                vv G++G +Gr +v++L+++e  + +vr++ +r++ + le l + ++++++ +D+ + d+   +++  eg+d+vi+ as 
  KOO21856.1 10 VVAGATGRVGRLVVQRLLQREGtATTVRAV-VRDGAKALEVLPRDGRIELVFCDLASDDCaaaIKRMSEGADAVIWCASG 88
                799****************99879999988.99999999****************9987533389999********9974 PP

>> NmrA  NmrA-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.7   0.1   2.5e-07   0.00049       1      70 [.       9      84 ..       9     102 .. 0.75
   2 ?   -2.4   0.0       1.4   2.8e+03     118     141 ..     157     180 ..     124     182 .. 0.66

  Alignments for each domain:
  == domain 1  score: 19.7 bits;  conditional E-value: 2.5e-07
                EEESSTTSHHHHHHHHHHHH...HT-EEEEEES-S-SHHHHHHHHST.TEEEES-TT-H...HHHHHHHTT-SEEEE CS
        NmrA  1 IlviGaTGrqGksvvrallk...aghkvralvRdtkselakslkeaG.velvkgdlddk...eslvealkgvdvvfs 70
                ++v GaTGr G+ vv+ ll+      +vra+vRd  + +++ l   G  elv  dl ++   + +++  +g+d+v+ 
  KOO21856.1  9 VVVAGATGRVGRLVVQRLLQregTATTVRAVVRDGAK-ALEVLPRDGrIELVFCDLASDdcaAAIKRMSEGADAVIW 84
                689*****************8776789*******865.456666666368886665543122678888888888875 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 1.4
                 TTHHHHHHHHHHHHCTS-EEEEEE CS
        NmrA 118 hfdsKaeieeyvralgipytfvya 141
                 + d+K+  e  +r+ g py +v++
  KOO21856.1 157 ILDKKMVAEAKLREGGAPYCIVRP 180
                 567778788888888888877766 PP

>> DapB_N  Dihydrodipicolinate reductase, N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   0.1   2.2e-06    0.0044       3      36 ..       9      43 ..       7      75 .. 0.81
   2 ?   -0.7   0.0      0.75   1.5e+03      65      91 ..     194     220 ..     191     223 .. 0.85

  Alignments for each domain:
  == domain 1  score: 17.1 bits;  conditional E-value: 2.2e-06
                EEEETTTSHHHHHHHHHHHHSTTE.EEEEEEETTC CS
      DapB_N  3 vavvGasGrmGkevvkaveeaedl.elvaavdrke 36
                v+v+Ga+Gr+G+ vv+ + ++e++ + v av r++
  KOO21856.1  9 VVVAGATGRVGRLVVQRLLQREGTaTTVRAVVRDG 43
                99**************9999877515566777765 PP

  == domain 2  score: -0.7 bits;  conditional E-value: 0.75
                 HHH-SEEEE-S-HHHHHHHHHHHHHTT CS
      DapB_N  65 lekadvliDFTtpeavlenlklalekg 91 
                 l + dv++  T+p+ + e+l  +le++
  KOO21856.1 194 LSQGDVAVGRTNPDDLAEVLVSCLEEP 220
                 67789*************999999875 PP

>> Sacchrp_dh_NADP  Saccharopine dehydrogenase NADP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.4   0.1     2e-06    0.0041       1      80 [.       9      89 ..       9      97 .. 0.91

  Alignments for each domain:
  == domain 1  score: 17.4 bits;  conditional E-value: 2e-06
                     EEEE--.SHHHHHHHHHHHCTCCT-GEEEEEESSHHHHHHHHCHHTTTCEEEEE--TTTHHHHHHHHHTTSSEEEE-SSGG CS
  Sacchrp_dh_NADP  1 vliiGa.GsvGqavaellarhfdvdaeitvadrskeklealaakalgvrfeaialdaenyeavLaallkegdlvvnlsppi 80
                     v++ Ga G+vG+ v++ l++++   +++  + r+ +k+ +++    ++++ +  l  ++ +a ++++ +++d+v+ ++  +
       KOO21856.1  9 VVVAGAtGRVGRLVVQRLLQREGTATTVRAVVRDGAKALEVLPRDGRIELVFCDLASDDCAAAIKRMSEGADAVIWCASGF 89
                     7899******************99779999999999999999988*****************9***99999****998765 PP

>> NAD_binding_4  Male sterility protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.2   0.1   7.8e-05      0.16       2      34 ..      12      45 ..      11      76 .. 0.88
   2 ?    2.6   0.0     0.033        65     186     232 ..     163     220 ..     160     232 .. 0.80

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 7.8e-05
                   E-TTSHHHHHHHHHHHHHS-.T.EEEEEE-SSSH CS
  NAD_binding_4  2 TGaTGFLGkvLlekLLrttpev.kiyllvRaksg 34
                    GaTG +G+ ++++LL+++    ++ ++vR   +
     KOO21856.1 12 AGATGRVGRLVVQRLLQREGTAtTVRAVVRDGAK 45
                   7***************999988899999997654 PP

  == domain 2  score: 2.6 bits;  conditional E-value: 0.033
                    HHHHHHHHH---EEEEEE-EEE-............-SSST---TTSHHHHHHHHHHHH- CS
  NAD_binding_4 186 lvrearrrsglpvvivRpsiitg............esktGwingsdlgirgllgliakg 232
                    + +++ r++g p +ivRp+ +              +   G +n +d ++++l+++ ++ 
     KOO21856.1 163 VAEAKLREGGAPYCIVRPTGLKDtwpagrpilsqgDVAVGRTNPDD-LAEVLVSCLEEP 220
                    44555667899*******9999888999888888888888888888.888888888766 PP

>> TrkA_C  TrkA-C domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.0   1.7e-05     0.035       4      65 ..     150     212 ..     149     215 .. 0.94

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 1.7e-05
                 EEEE--GGGTTSBHHHHTHHHHS-EEEEEE-T..-EEES--TT-B--TT-EEEEEEEHHHHHHH CS
      TrkA_C   4 vtvpagsplvGktlkelnlrargvlvvairRg..geliipsgdtvLeeGDvllvvgspsdlael 65 
                 +++++g+ l+ k+++e++lr+ g     i+R+   + ++p g  +L  GDv +  ++p+dlae+
  KOO21856.1 150 IRLNPGAILDKKMVAEAKLRE-GGAPYCIVRPtgLKDTWPAGRPILSQGDVAVGRTNPDDLAEV 212
                 7899*****************.***********999***************9999999999987 PP

>> adh_short  short chain dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.1   0.00012      0.23       2      72 ..       8      76 ..       7     108 .. 0.84

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00012
                EEEEESTTSHHHHHHHHHHHHTT-EEEEEESCHHHHHHHHHHHHHTTSEEEEEE-TTTSHHHHHHHHHHHH CS
   adh_short  2 vvlvtGassGIGraiakelakeGakvvvvdrseekleevakelkeegakalaiqvDvtdreevealvekav 72
                +v+v Ga++ +Gr ++++l+++  + + v    ++ +++++ l ++  ++  + +D+++ +++ a+++++ 
  KOO21856.1  8 TVVVAGATGRVGRLVVQRLLQREGTATTVRAVVRDGAKALEVLPRD-GRIELVFCDLAS-DDCAAAIKRMS 76
                79*******************99999999999999*9*******96.79********94.55555555554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (338 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       433  (0.0241508); expected 358.6 (0.02)
Passed bias filter:                      384  (0.0214178); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.43u 0.22s 00:00:00.65 Elapsed: 00:00:00.35
# Mc/sec: 2861.16
//
Query:       KOO21857.1  [L=149]
Description: hypothetical protein Ctob_003418, partial [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (149 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       225  (0.0125495); expected 358.6 (0.02)
Passed bias filter:                      206  (0.0114898); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.19s 00:00:00.53 Elapsed: 00:00:00.33
# Mc/sec: 1338.99
//
Query:       KOO21858.1  [L=864]
Description: transcriptional regulator [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
      7e-68  222.8  33.1    7.8e-11   41.5   0.3    9.0  8  TPR_10       Tetratricopeptide repeat
    8.8e-61  202.2  42.6      9e-16   57.9   3.6    7.4  7  TPR_12       Tetratricopeptide repeat
    2.1e-21   76.7  19.9    4.6e-10   39.4   5.0    3.9  3  TPR_MalT     MalT-like TPR region
    1.1e-13   50.3  15.2      0.019   14.8   0.1    7.6  7  TPR_1        Tetratricopeptide repeat
    3.1e-13   48.7  22.8       0.19   11.9   0.2    8.9  8  TPR_2        Tetratricopeptide repeat
    1.1e-12   47.0  12.1       0.87   10.0   0.1    8.2  8  TPR_8        Tetratricopeptide repeat
    3.6e-10   40.4   0.0    7.6e-10   39.3   0.0    1.4  1  4HBT_2       Thioesterase-like superfamily
    6.4e-08   32.5  57.1      0.023   15.3   0.3   11.5  9  TPR_4        Tetratricopeptide repeat
    2.6e-07   30.2  33.2       0.61   10.3   0.2    8.1  7  TPR_7        Tetratricopeptide repeat
    4.6e-07   30.0   4.7        5.4    7.4   0.0    6.3  6  Osmo_CC      Osmosensory transporter coiled coil
    6.2e-06   26.6  31.5       0.07   13.6   0.9    6.5  7  TPR_19       Tetratricopeptide repeat
    1.6e-05   25.5  49.4     0.0044   17.6   2.2    9.0  8  TPR_16       Tetratricopeptide repeat
    4.1e-05   23.2  17.5        1.1    9.0   0.2    7.6  8  TPR_11       TPR repeat
    5.7e-05   23.2  10.7          8    7.1   0.0    7.2  6  TPR_17       Tetratricopeptide repeat
     0.0011   18.9   0.0         93    3.2   0.0    5.9  7  TPR_3        Tetratricopeptide repeat
  ------ inclusion threshold ------
      0.038   14.8  44.5       0.74   10.8   0.5   10.0  8  TPR_14       Tetratricopeptide repeat
      0.071   13.5   0.1       0.22   11.9   0.1    1.9  1  4HBT         Thioesterase superfamily
       0.24   10.7   0.0       0.37   10.0   0.0    1.2  1  Acyl-ACP_TE  Acyl-ACP thioesterase
          1    9.0  16.4        2.4    7.8   1.1    4.6  4  TPR_21       Tetratricopeptide repeat-like domain


Domain annotation for each model (and alignments):
>> TPR_10  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.3   1.3e-05     0.012       5      32 ..     373     400 ..     369     403 .. 0.88
   2 !   37.7   0.3   1.3e-12   1.2e-09       1      42 []     402     443 ..     402     443 .. 0.97
   3 !   41.5   0.3   8.2e-14   7.8e-11       1      41 [.     444     484 ..     444     485 .. 0.98
   4 !   41.2   0.5     1e-13   9.9e-11       1      42 []     486     527 ..     486     527 .. 0.98
   5 !   31.0   0.0   1.6e-10   1.5e-07       1      42 []     528     569 ..     528     569 .. 0.99
   6 !   36.6   0.1   2.9e-12   2.7e-09       1      42 []     570     611 ..     570     611 .. 0.97
   7 !   25.8   0.5   7.1e-09   6.7e-06       1      29 [.     612     640 ..     612     650 .. 0.90
   8 !   12.5   0.2   0.00011       0.1       2      38 ..     655     692 ..     655     693 .. 0.95

  Alignments for each domain:
  == domain 1  score: 15.5 bits;  conditional E-value: 1.3e-05
      TPR_10   5 lnNLanalrqrgrydeAealleealair 32 
                 +  L+++l+++g++deA  ll+eal++ 
  KOO21858.1 373 QDRLGRLLQDQGKLDEAGGLLREALEAS 400
                 678**********************975 PP

  == domain 2  score: 37.7 bits;  conditional E-value: 1.3e-12
      TPR_10   1 tAsslnNLanalrqrgrydeAealleealairrrllGpdHPd 42 
                 t+ s nNLa +l+++g++d+A  ll+eal++ r++lG+ HPd
  KOO21858.1 402 TLISINNLATLLYAQGKLDGAGMLLREALEASRATLGDRHPD 443
                 67799************************************9 PP

  == domain 3  score: 41.5 bits;  conditional E-value: 8.2e-14
      TPR_10   1 tAsslnNLanalrqrgrydeAealleealairrrllGpdHP 41 
                 t++s nNL+ +lr++g++deA  l+ eal++rr++lG+ HP
  KOO21858.1 444 TLTSINNLGLLLRAQGKLDEAGVLYGEALEARRATLGDRHP 484
                 89**************************************9 PP

  == domain 4  score: 41.2 bits;  conditional E-value: 1e-13
      TPR_10   1 tAsslnNLanalrqrgrydeAealleealairrrllGpdHPd 42 
                 t++s  NL+ +lr++g++deA  l++eal++rr++lG+ HPd
  KOO21858.1 486 TLASIANLGGLLRAQGKLDEAGVLYREALEARRATLGDRHPD 527
                 899**************************************9 PP

  == domain 5  score: 31.0 bits;  conditional E-value: 1.6e-10
      TPR_10   1 tAsslnNLanalrqrgrydeAealleealairrrllGpdHPd 42 
                 t++s + L+ +l+++g++deA  ll+e l++ r++lG+ HPd
  KOO21858.1 528 TLTSISKLGGLLHDQGKLDEAGVLLREDLEVSRATLGDRHPD 569
                 89***************************************9 PP

  == domain 6  score: 36.6 bits;  conditional E-value: 2.9e-12
      TPR_10   1 tAsslnNLanalrqrgrydeAealleealairrrllGpdHPd 42 
                 t+ s +NL+ +l+++g+++eA  ll+eal+++r++lG+ HPd
  KOO21858.1 570 TLISISNLGLLLQDQGKLEEAGGLLREALDAQRATLGDRHPD 611
                 67799************************************9 PP

  == domain 7  score: 25.8 bits;  conditional E-value: 7.1e-09
      TPR_10   1 tAsslnNLanalrqrgrydeAealleeal 29 
                 t++s nNL+++l+++gr+ eAe ll ea 
  KOO21858.1 612 TLASINNLGRLLHDQGRLGEAETLLLEAH 640
                 89***********************9996 PP

  == domain 8  score: 12.5 bits;  conditional E-value: 0.00011
      TPR_10   2 AsslnNLanalrqrgrydeAeal.leealairrrllGp 38 
                 ++s+  La + r++gr + A+al   ++l++ r++lGp
  KOO21858.1 655 LRSQAWLADVRRAQGRIESARALvDARVLSTARAALGP 692
                 579999*******************************8 PP

>> TPR_12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.9   0.3   0.00022       0.2       5      32 ..     372     399 ..     366     403 .. 0.71
   2 !   57.9   3.6   9.6e-19     9e-16       3      76 ..     403     476 ..     401     477 .. 0.96
   3 !   52.7   5.0   4.1e-17   3.9e-14       6      76 ..     448     518 ..     447     519 .. 0.97
   4 !   47.3   1.4     2e-15   1.8e-12       2      64 ..     487     548 ..     485     561 .. 0.92
   5 !   45.5   0.7   7.2e-15   6.8e-12       2      75 ..     528     601 ..     527     602 .. 0.96
   6 !   55.7   2.5   4.8e-18   4.6e-15       2      71 ..     570     639 ..     569     642 .. 0.96
   7 ?    5.1   0.1     0.029        27       5      39 ..     659     692 ..     654     700 .. 0.73

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 0.00022
      TPR_12   5 alnnlaavlrrlgrydeAlellekalei 32 
                 ++ +l+ +l+ +g++deA  ll++ale+
  KOO21858.1 372 LQDRLGRLLQDQGKLDEAGGLLREALEA 399
                 3436888888888888888888888886 PP

  == domain 2  score: 57.9 bits;  conditional E-value: 9.6e-19
      TPR_12   3 atalnnlaavlrrlgrydeAlellekaleiarrllGpdhpltattlrnLgrlyralgryeeAlelleealaiae 76 
                 +++ nnla++l+++g++d A  ll++ale+ r++lG+ hp+t+t+ +nLg l+ra+g+++eA  l+ eal++++
  KOO21858.1 403 LISINNLATLLYAQGKLDGAGMLLREALEASRATLGDRHPDTLTSINNLGLLLRAQGKLDEAGVLYGEALEARR 476
                 56778******************************************************************998 PP

  == domain 3  score: 52.7 bits;  conditional E-value: 4.1e-17
      TPR_12   6 lnnlaavlrrlgrydeAlellekaleiarrllGpdhpltattlrnLgrlyralgryeeAlelleealaiae 76 
                  nnl+++lr++g++deA  l+ +ale++r++lG+ hp t+++  nLg l+ra+g+++eA  l++eal++++
  KOO21858.1 448 INNLGLLLRAQGKLDEAGVLYGEALEARRATLGDRHPRTLASIANLGGLLRAQGKLDEAGVLYREALEARR 518
                 479*****************************************************************998 PP

  == domain 4  score: 47.3 bits;  conditional E-value: 2e-15
      TPR_12   2 vatalnnlaavlrrlgrydeAlellekaleiarrllGpdhpltattlrnLgrlyralgryeeA 64 
                 +a+++ nl+ +lr++g++deA  l+++ale++r++lG+ hp+t+t+   Lg l++ +g+++eA
  KOO21858.1 487 LASIA-NLGGLLRAQGKLDEAGVLYREALEARRATLGDRHPDTLTSISKLGGLLHDQGKLDEA 548
                 56777.********************************************************9 PP

  == domain 5  score: 45.5 bits;  conditional E-value: 7.2e-15
      TPR_12   2 vatalnnlaavlrrlgrydeAlellekaleiarrllGpdhpltattlrnLgrlyralgryeeAlelleealaia 75 
                 ++t+ ++l+ +l+ +g++deA  ll++ le+ r++lG+ hp+t+++  nLg l++ +g++eeA  ll+eal++ 
  KOO21858.1 528 TLTSISKLGGLLHDQGKLDEAGVLLREDLEVSRATLGDRHPDTLISISNLGLLLQDQGKLEEAGGLLREALDAQ 601
                 6788889****************************************************************976 PP

  == domain 6  score: 55.7 bits;  conditional E-value: 4.8e-18
      TPR_12   2 vatalnnlaavlrrlgrydeAlellekaleiarrllGpdhpltattlrnLgrlyralgryeeAlelleea 71 
                 ++++ +nl+++l+ +g+++eA  ll++al+++r++lG+ hp+t+++ +nLgrl++ +gr+ eA+ ll ea
  KOO21858.1 570 TLISISNLGLLLQDQGKLEEAGGLLREALDAQRATLGDRHPDTLASINNLGRLLHDQGRLGEAETLLLEA 639
                 677888************************************************************9998 PP

  == domain 7  score: 5.1 bits;  conditional E-value: 0.029
      TPR_12   5 alnnlaavlrrlgrydeAlelle.kaleiarrllGp 39 
                 a+  la+v r++gr + A++l + ++l  ar++lGp
  KOO21858.1 659 AW--LADVRRAQGRIESARALVDaRVLSTARAALGP 692
                 44..9*************999752455555666666 PP

>> TPR_MalT  MalT-like TPR region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.0   3.9   3.1e-06    0.0029      23     147 ..     354     470 ..     334     479 .. 0.79
   2 !   27.2   0.0   2.5e-09   2.4e-06      65     154 ..     473     561 ..     470     569 .. 0.89
   3 !   39.4   5.0   4.9e-13   4.6e-10      72     185 ..     564     679 ..     557     697 .. 0.86

  Alignments for each domain:
  == domain 1  score: 17.0 bits;  conditional E-value: 3.1e-06
    TPR_MalT  23 lArqALallpeddllariaatavlGeasllqGdleaAlqalqeaeklarqadslhvallallqqaeilvaqGrLheAletyeqalqlateqglqqlplv 121
                   r+ALa++p ++  ++++    lG+  + qG+l++A   l+ea +++        +l ++  +a +l aqG+L+ A  + ++al+  + + + + p  
  KOO21858.1 354 EGRAALARMPREERATSALQ-DRLGRLLQDQGKLDEAGGLLREALEAS-------HTLISINNLATLLYAQGKLDGAGMLLREALEASRATLGDRHPDT 444
                 45778888888886666665.556888888888888888888887777.......48899999999999999999999999999999999999999988 PP

    TPR_MalT 122 gfllvlladllyEwndLeeAeqhlqe 147
                       l+ ll+ +++L+eA     e
  KOO21858.1 445 LTSINNLGLLLRAQGKLDEAGVLYGE 470
                 88889999999999999999665555 PP

  == domain 2  score: 27.2 bits;  conditional E-value: 2.5e-09
    TPR_MalT  65 eaeklarqadslhvallallqqaeilvaqGrLheAletyeqalqlateqglqqlplvgfllvlladllyEwndLeeAeqhlqeGielleq 154
                 ea++++++  +++ +l ++  ++ +l+aqG+L+eA  +y++al+  + + + + p       +l+ ll+++++L+eA   l+e +e+++ 
  KOO21858.1 473 EARRATLGDRHPR-TLASIANLGGLLRAQGKLDEAGVLYREALEARRATLGDRHPDTLTSISKLGGLLHDQGKLDEAGVLLREDLEVSRA 561
                 5566666666666.9****************************************9999999******************9999998876 PP

  == domain 3  score: 39.4 bits;  conditional E-value: 4.9e-13
    TPR_MalT  72 qadslhvallallqqaeilvaqGrLheAletyeqalqlateqglqqlplvgfllvlladllyEwndLeeAeqhlqeGie.lleql..epeaaldayvll 167
                 +  ++  +l ++  ++ +l+ qG+L+eA  + ++al   + + + + p        l++ll+++++L eAe+ l+e+   ++  l  +++++l++++ l
  KOO21858.1 564 GDRHP-DTLISISNLGLLLQDQGKLEEAGGLLREALDAQRATLGDRHPDTLASINNLGRLLHDQGRLGEAETLLLEAHHgCAATLaeGQRTQLRSQAWL 661
                 44444.499***************************************999999999****************9887664333333488999******* PP

    TPR_MalT 168 arialaqGdleeAetlle 185
                 a+++ aqG++e A +l++
  KOO21858.1 662 ADVRRAQGRIESARALVD 679
                 *************99876 PP

>> TPR_1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.7   0.0     0.015        14       6      29 ..     375     398 ..     375     402 .. 0.89
   2 !    6.4   0.1    0.0092       8.7       5      29 ..     407     431 ..     405     433 .. 0.90
   3 !   14.8   0.1     2e-05     0.019       5      29 ..     449     473 ..     447     476 .. 0.95
   4 !   12.2   0.1   0.00013      0.13       6      29 ..     492     515 ..     489     518 .. 0.94
   5 ?    0.7   0.0      0.56   5.3e+02       7      20 ..     535     548 ..     533     551 .. 0.90
   6 !    8.6   0.1    0.0017       1.6       5      28 ..     575     598 ..     573     601 .. 0.85
   7 ?    5.0   0.0     0.025        23       5      24 ..     617     636 ..     614     640 .. 0.86

  Alignments for each domain:
  == domain 1  score: 5.7 bits;  conditional E-value: 0.015
                 HHHHHHHHTT-HHHHHHHHHHHHH CS
       TPR_1   6 nlGnayfklgkydeAleyyekALe 29 
                 +lG +++ +gk+deA    ++ALe
  KOO21858.1 375 RLGRLLQDQGKLDEAGGLLREALE 398
                 79*************988888887 PP

  == domain 2  score: 6.4 bits;  conditional E-value: 0.0092
                 HHHHHHHHHTT-HHHHHHHHHHHHH CS
       TPR_1   5 ynlGnayfklgkydeAleyyekALe 29 
                 +nl+ +++ +gk+d A    ++ALe
  KOO21858.1 407 NNLATLLYAQGKLDGAGMLLREALE 431
                 8*************99888888887 PP

  == domain 3  score: 14.8 bits;  conditional E-value: 2e-05
                 HHHHHHHHHTT-HHHHHHHHHHHHH CS
       TPR_1   5 ynlGnayfklgkydeAleyyekALe 29 
                 +nlG++++ +gk+deA   y +ALe
  KOO21858.1 449 NNLGLLLRAQGKLDEAGVLYGEALE 473
                 8***********************8 PP

  == domain 4  score: 12.2 bits;  conditional E-value: 0.00013
                 HHHHHHHHTT-HHHHHHHHHHHHH CS
       TPR_1   6 nlGnayfklgkydeAleyyekALe 29 
                 nlG +++ +gk+deA   y++ALe
  KOO21858.1 492 NLGGLLRAQGKLDEAGVLYREALE 515
                 9**********************9 PP

  == domain 5  score: 0.7 bits;  conditional E-value: 0.56
                 HHHHHHHTT-HHHH CS
       TPR_1   7 lGnayfklgkydeA 20 
                 lG +++ +gk+deA
  KOO21858.1 535 LGGLLHDQGKLDEA 548
                 78899********9 PP

  == domain 6  score: 8.6 bits;  conditional E-value: 0.0017
                 HHHHHHHHHTT-HHHHHHHHHHHH CS
       TPR_1   5 ynlGnayfklgkydeAleyyekAL 28 
                  nlG++++ +gk++eA    ++AL
  KOO21858.1 575 SNLGLLLQDQGKLEEAGGLLREAL 598
                 69**************66666666 PP

  == domain 7  score: 5.0 bits;  conditional E-value: 0.025
                 HHHHHHHHHTT-HHHHHHHH CS
       TPR_1   5 ynlGnayfklgkydeAleyy 24 
                 +nlG +++ +g++ eA+   
  KOO21858.1 617 NNLGRLLHDQGRLGEAETLL 636
                 8***************8765 PP

>> TPR_2  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.5   0.1   0.00058      0.55       5      29 ..     374     398 ..     370     402 .. 0.91
   2 ?    4.8   0.1     0.038        36       5      29 ..     407     431 ..     404     434 .. 0.87
   3 !   11.9   0.2    0.0002      0.19       5      29 ..     449     473 ..     447     476 .. 0.94
   4 !   10.2   0.3    0.0007      0.66       6      29 ..     492     515 ..     489     518 .. 0.93
   5 ?    0.4   0.0      0.96   9.1e+02       6      22 ..     534     550 ..     532     559 .. 0.79
   6 !    9.4   0.1    0.0013       1.2       5      29 ..     575     599 ..     573     602 .. 0.92
   7 !    8.2   0.0    0.0032         3       5      27 ..     617     639 ..     614     640 .. 0.93
   8 ?    0.8   0.0      0.75   7.1e+02       6      22 ..     660     676 ..     656     679 .. 0.87

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00058
       TPR_2   5 ynlGlayyklgdyeeAleafekAle 29 
                  +lG+++  +g+++eA  ++++Ale
  KOO21858.1 374 DRLGRLLQDQGKLDEAGGLLREALE 398
                 68**********************8 PP

  == domain 2  score: 4.8 bits;  conditional E-value: 0.038
       TPR_2   5 ynlGlayyklgdyeeAleafekAle 29 
                 +nl+ ++y++g+++ A  ++++Ale
  KOO21858.1 407 NNLATLLYAQGKLDGAGMLLREALE 431
                 79*************9888888877 PP

  == domain 3  score: 11.9 bits;  conditional E-value: 0.0002
       TPR_2   5 ynlGlayyklgdyeeAleafekAle 29 
                 +nlGl+++++g+++eA  ++ +Ale
  KOO21858.1 449 NNLGLLLRAQGKLDEAGVLYGEALE 473
                 79**********************8 PP

  == domain 4  score: 10.2 bits;  conditional E-value: 0.0007
       TPR_2   6 nlGlayyklgdyeeAleafekAle 29 
                 nlG +++++g+++eA  ++++Ale
  KOO21858.1 492 NLGGLLRAQGKLDEAGVLYREALE 515
                 8999*******************8 PP

  == domain 5  score: 0.4 bits;  conditional E-value: 0.96
       TPR_2   6 nlGlayyklgdyeeAle 22 
                  lG ++  +g+++eA  
  KOO21858.1 534 KLGGLLHDQGKLDEAGV 550
                 5888999*******955 PP

  == domain 6  score: 9.4 bits;  conditional E-value: 0.0013
       TPR_2   5 ynlGlayyklgdyeeAleafekAle 29 
                  nlGl++  +g++eeA  ++++Al 
  KOO21858.1 575 SNLGLLLQDQGKLEEAGGLLREALD 599
                 59*********************96 PP

  == domain 7  score: 8.2 bits;  conditional E-value: 0.0032
       TPR_2   5 ynlGlayyklgdyeeAleafekA 27 
                 +nlG+++  +g++ eA+ ++ +A
  KOO21858.1 617 NNLGRLLHDQGRLGEAETLLLEA 639
                 79****************99998 PP

  == domain 8  score: 0.8 bits;  conditional E-value: 0.75
       TPR_2   6 nlGlayyklgdyeeAle 22 
                 +l+++ +++g+ e A++
  KOO21858.1 660 WLADVRRAQGRIESARA 676
                 7999***********97 PP

>> TPR_8  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.9   0.1     0.019        18       6      30 ..     375     399 ..     372     400 .. 0.91
   2 ?    4.9   0.1     0.038        36       5      33 ..     407     435 ..     405     436 .. 0.92
   3 !    9.8   0.0     0.001      0.96       3      32 ..     447     476 ..     445     478 .. 0.90
   4 !   10.0   0.1   0.00092      0.87       5      33 ..     491     519 ..     487     520 .. 0.91
   5 ?    0.7   0.0      0.83   7.9e+02       6      21 ..     534     549 ..     530     561 .. 0.84
   6 !    7.3   0.0    0.0067       6.3       6      32 ..     576     602 ..     573     604 .. 0.90
   7 !    7.7   0.0    0.0051       4.8       4      27 ..     616     639 ..     613     639 .. 0.89
   8 ?   -0.3   0.0       1.8   1.7e+03       2      22 ..     656     676 ..     655     677 .. 0.87

  Alignments for each domain:
  == domain 1  score: 5.9 bits;  conditional E-value: 0.019
                 HHHHHHHHTT-HHHHHHHHHHHHHH CS
       TPR_8   6 nlgsiylklgdyeeAkeyyekalel 30 
                 +lg++++++g+++eA   +++ale+
  KOO21858.1 375 RLGRLLQDQGKLDEAGGLLREALEA 399
                 79*************9999999986 PP

  == domain 2  score: 4.9 bits;  conditional E-value: 0.038
                 HHHHHHHHHTT-HHHHHHHHHHHHHHHHH CS
       TPR_8   5 ynlgsiylklgdyeeAkeyyekaleldpd 33 
                 +nl+ ++  +g+++ A   +++ale++++
  KOO21858.1 407 NNLATLLYAQGKLDGAGMLLREALEASRA 435
                 79***********************9875 PP

  == domain 3  score: 9.8 bits;  conditional E-value: 0.001
                 HHHHHHHHHHHTT-HHHHHHHHHHHHHHHH CS
       TPR_8   3 ayynlgsiylklgdyeeAkeyyekaleldp 32 
                 + +nlg++++ +g+++eA   y +ale+++
  KOO21858.1 447 SINNLGLLLRAQGKLDEAGVLYGEALEARR 476
                 568***********************9987 PP

  == domain 4  score: 10.0 bits;  conditional E-value: 0.00092
                 HHHHHHHHHTT-HHHHHHHHHHHHHHHHH CS
       TPR_8   5 ynlgsiylklgdyeeAkeyyekaleldpd 33 
                  nlg +++ +g+++eA   y++ale++++
  KOO21858.1 491 ANLGGLLRAQGKLDEAGVLYREALEARRA 519
                 79***********************9875 PP

  == domain 5  score: 0.7 bits;  conditional E-value: 0.83
                 HHHHHHHHTT-HHHHH CS
       TPR_8   6 nlgsiylklgdyeeAk 21 
                 +lg +++++g+++eA 
  KOO21858.1 534 KLGGLLHDQGKLDEAG 549
                 68999*********95 PP

  == domain 6  score: 7.3 bits;  conditional E-value: 0.0067
                 HHHHHHHHTT-HHHHHHHHHHHHHHHH CS
       TPR_8   6 nlgsiylklgdyeeAkeyyekaleldp 32 
                 nlg++++++g++eeA   +++al++++
  KOO21858.1 576 NLGLLLQDQGKLEEAGGLLREALDAQR 602
                 8**************999999998876 PP

  == domain 7  score: 7.7 bits;  conditional E-value: 0.0051
                 HHHHHHHHHHTT-HHHHHHHHHHH CS
       TPR_8   4 yynlgsiylklgdyeeAkeyyeka 27 
                  +nlg++++++g++ eA+  + +a
  KOO21858.1 616 INNLGRLLHDQGRLGEAETLLLEA 639
                 68***************9988876 PP

  == domain 8  score: -0.3 bits;  conditional E-value: 1.8
                 CHHHHHHHHHHHTT-HHHHHH CS
       TPR_8   2 eayynlgsiylklgdyeeAke 22 
                 ++  +l+++ + +g++e+A +
  KOO21858.1 656 RSQAWLADVRRAQGRIESARA 676
                 677899************976 PP

>> 4HBT_2  Thioesterase-like superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.3   0.0   8.1e-13   7.6e-10       5     103 ..     721     819 ..     719     831 .. 0.90

  Alignments for each domain:
  == domain 1  score: 39.3 bits;  conditional E-value: 8.1e-13
      4HBT_2   5 dvDlnghlnnarylryleearvkflertglksrsiarrgiglilssahvryrrplkfpdrltvefrvididaktliiehrflsnadgkk...aarveer 100
                 d+D + h+nna+yl  le ar+++   tg+    + r+g + +++sa +r+r++lk+ + ++++++v   d++++ + + f     g     +a +++r
  KOO21858.1 721 DIDQFLHMNNASYLVHLELARWEMGVATGF-ATHLGRSGASFVVASAFTRFRKELKPLQPFEIHSTVHGADERSMWFLQLFHA--AGADsppVAAGLCR 816
                 89****************************.999999****************************************999988..44444568888887 PP

      4HBT_2 101 ivv 103
                 +v+
  KOO21858.1 817 AVL 819
                 765 PP

>> TPR_4  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.8   0.8       1.1   1.1e+03       7      21 ..     118     132 ..     117     132 .. 0.91
   2 ?    6.9   2.0     0.012        11       7      26 .]     376     395 ..     371     395 .. 0.92
   3 ?    6.0   0.1     0.025        23       6      25 ..     408     427 ..     407     428 .. 0.86
   4 ?    6.1   0.1     0.023        21       6      21 ..     450     465 ..     449     470 .. 0.88
   5 ?    5.4   0.3     0.037        34       6      26 .]     492     512 ..     491     512 .. 0.88
   6 !    7.3   0.0    0.0092       8.7       7      26 .]     535     554 ..     533     554 .. 0.90
   7 !    8.1   0.1    0.0052       4.9       6      26 .]     576     596 ..     575     596 .. 0.93
   8 !   15.3   0.3   2.5e-05     0.023       6      24 ..     618     636 ..     617     638 .. 0.93
   9 !   10.0   3.1    0.0012       1.1       2      25 ..     656     679 ..     655     680 .. 0.92

  Alignments for each domain:
  == domain 1  score: 0.8 bits;  conditional E-value: 1.1
       TPR_4   7 LArallalGdldeAr 21 
                 LA ++ a+G+ ++A+
  KOO21858.1 118 LALTAEARGEVADAL 132
                 8999*********96 PP

  == domain 2  score: 6.9 bits;  conditional E-value: 0.012
       TPR_4   7 LArallalGdldeAraller 26 
                 L+r+l+++G ldeA  ll++
  KOO21858.1 376 LGRLLQDQGKLDEAGGLLRE 395
                 9*************999996 PP

  == domain 3  score: 6.0 bits;  conditional E-value: 0.025
       TPR_4   6 aLArallalGdldeAralle 25 
                 +LA +l+a+G ld A  ll+
  KOO21858.1 408 NLATLLYAQGKLDGAGMLLR 427
                 79***********9976666 PP

  == domain 4  score: 6.1 bits;  conditional E-value: 0.023
       TPR_4   6 aLArallalGdldeAr 21 
                 +L+ +l a+G ldeA 
  KOO21858.1 450 NLGLLLRAQGKLDEAG 465
                 79*************6 PP

  == domain 5  score: 5.4 bits;  conditional E-value: 0.037
       TPR_4   6 aLArallalGdldeAraller 26 
                 +L+ +l a+G ldeA  l ++
  KOO21858.1 492 NLGGLLRAQGKLDEAGVLYRE 512
                 89999**********988875 PP

  == domain 6  score: 7.3 bits;  conditional E-value: 0.0092
       TPR_4   7 LArallalGdldeAraller 26 
                 L+ +l+++G ldeA  ll++
  KOO21858.1 535 LGGLLHDQGKLDEAGVLLRE 554
                 6668**************97 PP

  == domain 7  score: 8.1 bits;  conditional E-value: 0.0052
       TPR_4   6 aLArallalGdldeAraller 26 
                 +L+ +l+++G l+eA  ll++
  KOO21858.1 576 NLGLLLQDQGKLEEAGGLLRE 596
                 8**************999996 PP

  == domain 8  score: 15.3 bits;  conditional E-value: 2.5e-05
       TPR_4   6 aLArallalGdldeArall 24 
                 +L+r+l+++G+l eA++ll
  KOO21858.1 618 NLGRLLHDQGRLGEAETLL 636
                 79***************98 PP

  == domain 9  score: 10.0 bits;  conditional E-value: 0.0012
       TPR_4   2 rallaLArallalGdldeAralle 25 
                 r +++LA +  a+G+ + Aral++
  KOO21858.1 656 RSQAWLADVRRAQGRIESARALVD 679
                 7899*****************987 PP

>> TPR_7  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.4   0.3    0.0012       1.1       3      27 ..     374     398 ..     371     402 .. 0.86
   2 ?    0.8   0.2      0.65   6.2e+02       1      27 [.     405     431 ..     405     440 .. 0.79
   3 !   10.0   0.2   0.00079      0.75       1      32 [.     447     478 ..     447     482 .. 0.87
   4 !    9.6   0.3     0.001      0.99       2      32 ..     490     520 ..     489     524 .. 0.87
   5 ?    1.1   0.0      0.53     5e+02       3      29 ..     533     559 ..     531     566 .. 0.78
   6 !   10.3   0.2   0.00064      0.61       1      27 [.     573     600 ..     573     608 .. 0.84
   7 !    8.6   0.1    0.0022         2       1      24 [.     615     638 ..     615     651 .. 0.91

  Alignments for each domain:
  == domain 1  score: 9.4 bits;  conditional E-value: 0.0012
       TPR_7   3 lnLarlysrlGdyeeAielyeqsLa 27 
                 ++L+rl +++G+ +eA +l++++L+
  KOO21858.1 374 DRLGRLLQDQGKLDEAGGLLREALE 398
                 68********************773 PP

  == domain 2  score: 0.8 bits;  conditional E-value: 0.65
       TPR_7   1 aLlnLarlysrlGdyeeAielyeqsLa 27 
                 +++nLa l  ++G+ + A  l++++L+
  KOO21858.1 405 SINNLATLLYAQGKLDGAGMLLREALE 431
                 689************999888888773 PP

  == domain 3  score: 10.0 bits;  conditional E-value: 0.00079
       TPR_7   1 aLlnLarlysrlGdyeeAielyeqsLaltkdp 32 
                 +++nL+ l +++G+ +eA  ly ++L+ +++ 
  KOO21858.1 447 SINNLGLLLRAQGKLDEAGVLYGEALEARRAT 478
                 689*********************99877765 PP

  == domain 4  score: 9.6 bits;  conditional E-value: 0.001
       TPR_7   2 LlnLarlysrlGdyeeAielyeqsLaltkdp 32 
                 + nL+ l +++G+ +eA  ly+++L+ +++ 
  KOO21858.1 490 IANLGGLLRAQGKLDEAGVLYREALEARRAT 520
                 78*********************99887765 PP

  == domain 5  score: 1.1 bits;  conditional E-value: 0.53
       TPR_7   3 lnLarlysrlGdyeeAielyeqsLalt 29 
                 + L+ l +++G+ +eA  l+++ L++ 
  KOO21858.1 533 SKLGGLLHDQGKLDEAGVLLREDLEVS 559
                 66999***********88888866554 PP

  == domain 6  score: 10.3 bits;  conditional E-value: 0.00064
       TPR_7   1 aLlnLarlysrlGdyeeAielyeqsL.a 27 
                 +++nL+ l +++G+ eeA +l++++L a
  KOO21858.1 573 SISNLGLLLQDQGKLEEAGGLLREALdA 600
                 579*********************7744 PP

  == domain 7  score: 8.6 bits;  conditional E-value: 0.0022
       TPR_7   1 aLlnLarlysrlGdyeeAielyeq 24 
                 +++nL+rl +++G+  eA++l+ +
  KOO21858.1 615 SINNLGRLLHDQGRLGEAETLLLE 638
                 689*****************9977 PP

>> Osmo_CC  Osmosensory transporter coiled coil
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.8   0.0     0.073        69      29      44 ..     428     443 ..     427     444 .. 0.92
   2 !    7.1   0.0    0.0069       6.5      29      44 ..     470     485 ..     470     486 .. 0.93
   3 !    7.4   0.0    0.0057       5.4      29      44 ..     512     527 ..     511     528 .. 0.93
   4 ?    2.1   0.0      0.25   2.4e+02      30      44 ..     555     569 ..     552     570 .. 0.89
   5 ?    4.8   0.0     0.036        34      29      44 ..     596     611 ..     587     612 .. 0.92
   6 ?   -2.1   0.1       5.2   4.9e+03       5      14 ..     631     640 ..     630     642 .. 0.89

  Alignments for each domain:
  == domain 1  score: 3.8 bits;  conditional E-value: 0.073
                 HHHHHHHHHHHHH--- CS
     Osmo_CC  29 aaLeekRqrLvdqHPk 44 
                 +aLe+ R +L d+HP+
  KOO21858.1 428 EALEASRATLGDRHPD 443
                 589************7 PP

  == domain 2  score: 7.1 bits;  conditional E-value: 0.0069
                 HHHHHHHHHHHHH--- CS
     Osmo_CC  29 aaLeekRqrLvdqHPk 44 
                 +aLe++R +L d+HP+
  KOO21858.1 470 EALEARRATLGDRHPR 485
                 58*************7 PP

  == domain 3  score: 7.4 bits;  conditional E-value: 0.0057
                 HHHHHHHHHHHHH--- CS
     Osmo_CC  29 aaLeekRqrLvdqHPk 44 
                 +aLe++R +L d+HP+
  KOO21858.1 512 EALEARRATLGDRHPD 527
                 68*************7 PP

  == domain 4  score: 2.1 bits;  conditional E-value: 0.25
                 HHHHHHHHHHHH--- CS
     Osmo_CC  30 aLeekRqrLvdqHPk 44 
                 +Le  R +L d+HP+
  KOO21858.1 555 DLEVSRATLGDRHPD 569
                 78899*********7 PP

  == domain 5  score: 4.8 bits;  conditional E-value: 0.036
                 HHHHHHHHHHHHH--- CS
     Osmo_CC  29 aaLeekRqrLvdqHPk 44 
                 +aL ++R +L d+HP+
  KOO21858.1 596 EALDAQRATLGDRHPD 611
                 57999**********7 PP

  == domain 6  score: -2.1 bits;  conditional E-value: 5.2
                 XXXXXXXXXX CS
     Osmo_CC   5 EAkelLqehY 14 
                 EA+ lL e++
  KOO21858.1 631 EAETLLLEAH 640
                 9******998 PP

>> TPR_19  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.2   1.9   0.00044      0.41       3      55 ..     382     433 ..     380     437 .. 0.83
   2 !    7.4   1.9    0.0068       6.4       1      54 [.     413     474 ..     413     487 .. 0.86
   3 !    8.7   2.8    0.0027       2.5       1      55 [.     455     517 ..     455     521 .. 0.87
   4 !    8.1   0.3    0.0041       3.9       1      49 [.     497     553 ..     497     557 .. 0.87
   5 !   13.6   0.9   7.4e-05      0.07       3      49 ..     583     637 ..     581     641 .. 0.89
   6 !    7.8   0.7     0.005       4.7      24      54 ..     654     684 ..     644     690 .. 0.82
   7 ?   -1.3   0.0       3.4   3.2e+03      12      40 ..     798     823 ..     797     824 .. 0.79

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00044
      TPR_19   3 aegdyaeAlalleqalqedpknaearllLAeallalgqldeAealLdalpeed 55 
                 ++g+++eA  ll++al+++ + +    +LA +l+a+g ld A  lL +++e+ 
  KOO21858.1 382 DQGKLDEAGGLLREALEAS-HTLISINNLATLLYAQGKLDGAGMLLREALEAS 433
                 89*************8884.44444456**************99998888875 PP

  == domain 2  score: 7.4 bits;  conditional E-value: 0.0068
      TPR_19   1 llaegdyaeAlalleqalqe........dpknaearllLAeallalgqldeAealLdalpee 54 
                 l+a+g+++ A  ll++al++         p+ +    +L  +l a+g ldeA  l  +++e+
  KOO21858.1 413 LYAQGKLDGAGMLLREALEAsratlgdrHPDTLTSINNLGLLLRAQGKLDEAGVLYGEALEA 474
                 789**************97766666666999999999***************8877777666 PP

  == domain 3  score: 8.7 bits;  conditional E-value: 0.0027
      TPR_19   1 llaegdyaeAlalleqalqe........dpknaearllLAeallalgqldeAealLdalpeed 55 
                 l a+g+++eA  l+ +al++         p  ++  ++L  +l a+g ldeA  l  +++e+ 
  KOO21858.1 455 LRAQGKLDEAGVLYGEALEArratlgdrHPRTLASIANLGGLLRAQGKLDEAGVLYREALEAR 517
                 679***************7777777766999*********************98888887765 PP

  == domain 4  score: 8.1 bits;  conditional E-value: 0.0041
      TPR_19   1 llaegdyaeAlalleqalqe........dpknaearllLAeallalgqldeAealLd 49 
                 l a+g+++eA  l+++al++         p+ +     L  +l  +g ldeA  lL 
  KOO21858.1 497 LRAQGKLDEAGVLYREALEArratlgdrHPDTLTSISKLGGLLHDQGKLDEAGVLLR 553
                 679***************7777777766999999999***************88875 PP

  == domain 5  score: 13.6 bits;  conditional E-value: 7.4e-05
      TPR_19   3 aegdyaeAlalleqalqe........dpknaearllLAeallalgqldeAealLd 49 
                 ++g+++eA  ll++al++         p+ ++   +L ++l  +g+l eAe lL 
  KOO21858.1 583 DQGKLEEAGGLLREALDAqratlgdrHPDTLASINNLGRLLHDQGRLGEAETLLL 637
                 89**************7777777777999***********************996 PP

  == domain 6  score: 7.8 bits;  conditional E-value: 0.005
      TPR_19  24 naearllLAeallalgqldeAealLdalpee 54 
                 +++ +++LA++  a+g+++ A+al+da  ++
  KOO21858.1 654 QLRSQAWLADVRRAQGRIESARALVDARVLS 684
                 5566789******************986665 PP

  == domain 7  score: -1.3 bits;  conditional E-value: 3.4
      TPR_19  12 alleqalqedpknaearllLAeallalgq 40 
                 +l+ +a    ++++ ++++L++a l  g+
  KOO21858.1 798 QLFHAA---GADSPPVAAGLCRAVLRKGR 823
                 566666...677889999*****999987 PP

>> TPR_16  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.3       7.8   7.3e+03      40      54 ..     118     132 ..     118     137 .. 0.67
   2 !   12.8   2.6   0.00015      0.14       3      64 ..     376     433 ..     375     436 .. 0.92
   3 !    8.4   3.2    0.0036       3.4       3      62 ..     409     473 ..     407     478 .. 0.67
   4 ?    5.3   6.7     0.034        32       4      63 ..     452     516 ..     450     520 .. 0.69
   5 ?    6.3   1.0     0.017        16      40      63 ..     493     516 ..     492     556 .. 0.67
   6 !   17.6   2.2   4.7e-06    0.0044       2      59 ..     576     639 ..     575     646 .. 0.82
   7 ?    6.7   1.0     0.012        11      35      59 ..     656     680 ..     644     687 .. 0.84
   8 ?   -2.0   2.9       6.3   5.9e+03      14      56 ..     809     852 ..     801     859 .. 0.76

  Alignments for each domain:
  == domain 1  score: -2.3 bits;  conditional E-value: 7.8
      TPR_16  40 lgdaalrqgrlaeAa 54 
                 l++ a ++g++a+A+
  KOO21858.1 118 LALTAEARGEVADAL 132
                 566777777777776 PP

  == domain 2  score: 12.8 bits;  conditional E-value: 0.00015
      TPR_16   3 laraalragdyddAaaaleaalkrdpssPdaaeAllllgdaalrqgrlaeAaalyraalraa 64 
                 l+r++ ++g+ d+A  +l++al++      +  + ++l+ ++++qg l++A  l+r+al+a+
  KOO21858.1 376 LGRLLQDQGKLDEAGGLLREALEAS----HTLISINNLATLLYAQGKLDGAGMLLREALEAS 433
                 89****************8888888....499**************************9875 PP

  == domain 3  score: 8.4 bits;  conditional E-value: 0.0036
      TPR_16   3 laraalragdyddAaaaleaalkrdp.....ssPdaaeAllllgdaalrqgrlaeAa.alyraalr 62 
                 la++++++g+ d A  +l++al++ +     ++Pd+  + ++lg+++ +qg l+eA   + +a l+
  KOO21858.1 409 LATLLYAQGKLDGAGMLLREALEASRatlgdRHPDTLTSINNLGLLLRAQGKLDEAGvLYGEA-LE 473
                 66666666666666666655555543111114788*********************9555554.43 PP

  == domain 4  score: 5.3 bits;  conditional E-value: 0.034
      TPR_16   4 araalragdyddAaaaleaalkrdp.....ssPdaaeAllllgdaalrqgrlaeAaalyraalra 63 
                 +++++++g+ d+A  ++ +al++++     ++P++ ++  +lg ++ +qg l+eA  lyr+al+a
  KOO21858.1 452 GLLLRAQGKLDEAGVLYGEALEARRatlgdRHPRTLASIANLGGLLRAQGKLDEAGVLYREALEA 516
                 5556666666666555555554443111113677999999**********************976 PP

  == domain 5  score: 6.3 bits;  conditional E-value: 0.017
      TPR_16  40 lgdaalrqgrlaeAaalyraalra 63 
                 lg ++ +qg l+eA  lyr+al+a
  KOO21858.1 493 LGGLLRAQGKLDEAGVLYREALEA 516
                 566666666666666666666644 PP

  == domain 6  score: 17.6 bits;  conditional E-value: 4.7e-06
      TPR_16   2 alaraalragdyddAaaaleaalkrdp.....ssPdaaeAllllgdaalrqgrlaeAa.alyra 59 
                 +l++++ ++g+ ++A  +l++al++++     ++Pd+ ++ ++lg+++  qgrl eA+  l++a
  KOO21858.1 576 NLGLLLQDQGKLEEAGGLLREALDAQRatlgdRHPDTLASINNLGRLLHDQGRLGEAEtLLLEA 639
                 689999****************99996333335677**********************555555 PP

  == domain 7  score: 6.7 bits;  conditional E-value: 0.012
      TPR_16  35 eAllllgdaalrqgrlaeAaalyra 59 
                 +++ +l+d++ +qgr + A+al++a
  KOO21858.1 656 RSQAWLADVRRAQGRIESARALVDA 680
                 56779***************99987 PP

  == domain 8  score: -2.0 bits;  conditional E-value: 6.3
      TPR_16  14 ddAaaaleaalkrdpssPdaaeAllllgdaalrqgrlaeAa.al 56 
                 + Aa + +a+l+++++    +e l  lg++ +++  la+Aa  +
  KOO21858.1 809 PVAAGLCRAVLRKGREVVSPRELLGRLGLSSAELDALAAAApRA 852
                 56777778888888666668899999999999999999998665 PP

>> TPR_11  TPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.8   0.2     0.024        23       1      42 []     377     417 ..     377     417 .. 0.80
   2 ?    3.0   0.1      0.09        85       4      22 ..     413     431 ..     410     434 .. 0.86
   3 !    8.4   0.3    0.0018       1.7       1      22 [.     452     473 ..     452     477 .. 0.92
   4 !    9.0   0.2    0.0012       1.1       3      22 ..     496     515 ..     494     519 .. 0.90
   5 ?    1.4   0.0      0.28   2.7e+02       3      13 ..     538     548 ..     536     554 .. 0.87
   6 ?    1.3   0.1       0.3   2.8e+02       3      21 ..     580     598 ..     576     600 .. 0.73
   7 ?    1.1   0.0      0.33   3.1e+02       1      18 [.     620     637 ..     620     639 .. 0.81
   8 ?   -0.6   0.0       1.2   1.1e+03       2      14 ..     663     675 ..     662     677 .. 0.86

  Alignments for each domain:
  == domain 1  score: 4.8 bits;  conditional E-value: 0.024
      TPR_11   1 GdayyeqGkyeeAieaYkkAlkldPdnaeayynLGlayykqG 42 
                 G+++ +qGk++eA   +++Al+ + +  ++  nL+ ++y+qG
  KOO21858.1 377 GRLLQDQGKLDEAGGLLREALEASHTLISIN-NLATLLYAQG 417
                 677789****************999999985.5555555565 PP

  == domain 2  score: 3.0 bits;  conditional E-value: 0.09
      TPR_11   4 yyeqGkyeeAieaYkkAlk 22 
                 +y+qGk+++A   +++Al+
  KOO21858.1 413 LYAQGKLDGAGMLLREALE 431
                 8*********888888886 PP

  == domain 3  score: 8.4 bits;  conditional E-value: 0.0018
      TPR_11   1 GdayyeqGkyeeAieaYkkAlk 22 
                 G ++++qGk++eA   Y +Al+
  KOO21858.1 452 GLLLRAQGKLDEAGVLYGEALE 473
                 7889****************98 PP

  == domain 4  score: 9.0 bits;  conditional E-value: 0.0012
      TPR_11   3 ayyeqGkyeeAieaYkkAlk 22 
                 ++++qGk++eA   Y++Al+
  KOO21858.1 496 LLRAQGKLDEAGVLYREALE 515
                 689***************98 PP

  == domain 5  score: 1.4 bits;  conditional E-value: 0.28
      TPR_11   3 ayyeqGkyeeA 13 
                 ++++qGk++eA
  KOO21858.1 538 LLHDQGKLDEA 548
                 689*******9 PP

  == domain 6  score: 1.3 bits;  conditional E-value: 0.3
      TPR_11   3 ayyeqGkyeeAieaYkkAl 21 
                 ++ +qGk+eeA   +++Al
  KOO21858.1 580 LLQDQGKLEEAGGLLREAL 598
                 5668999999966666665 PP

  == domain 7  score: 1.1 bits;  conditional E-value: 0.33
      TPR_11   1 GdayyeqGkyeeAieaYk 18 
                 G+++++qG++ eA + + 
  KOO21858.1 620 GRLLHDQGRLGEAETLLL 637
                 899*********966555 PP

  == domain 8  score: -0.6 bits;  conditional E-value: 1.2
      TPR_11   2 dayyeqGkyeeAi 14 
                 d+ ++qG++e A 
  KOO21858.1 663 DVRRAQGRIESAR 675
                 8899******996 PP

>> TPR_17  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.2   0.1       1.3   1.3e+03      19      32 ..     376     389 ..     375     389 .. 0.93
   2 ?    6.3   0.1     0.015        14      15      32 ..     405     422 ..     404     424 .. 0.89
   3 ?    6.2   0.0     0.017        16      14      32 ..     446     464 ..     439     465 .. 0.86
   4 ?   -0.7   0.1       2.7   2.5e+03      17      32 ..     491     506 ..     488     506 .. 0.89
   5 ?    2.1   0.0      0.34   3.2e+02      17      32 ..     575     590 ..     566     591 .. 0.89
   6 !    7.1   0.0    0.0085         8      15      33 ..     615     633 ..     607     634 .. 0.88

  Alignments for each domain:
  == domain 1  score: 0.2 bits;  conditional E-value: 1.3
      TPR_17  19 LAelllknGdlmtA 32 
                 L++ll  +G+l++A
  KOO21858.1 376 LGRLLQDQGKLDEA 389
                 9**********998 PP

  == domain 2  score: 6.3 bits;  conditional E-value: 0.015
      TPR_17  15 aynnLAelllknGdlmtA 32 
                 + nnLA+ll+ +G+l+ A
  KOO21858.1 405 SINNLATLLYAQGKLDGA 422
                 569***********9977 PP

  == domain 3  score: 6.2 bits;  conditional E-value: 0.017
      TPR_17  14 daynnLAelllknGdlmtA 32 
                  + nnL+ ll+ +G+l++A
  KOO21858.1 446 TSINNLGLLLRAQGKLDEA 464
                 578**************98 PP

  == domain 4  score: -0.7 bits;  conditional E-value: 2.7
      TPR_17  17 nnLAelllknGdlmtA 32 
                  nL+ ll+ +G+l++A
  KOO21858.1 491 ANLGGLLRAQGKLDEA 506
                 69999********998 PP

  == domain 5  score: 2.1 bits;  conditional E-value: 0.34
      TPR_17  17 nnLAelllknGdlmtA 32 
                  nL+ ll  +G+l++A
  KOO21858.1 575 SNLGLLLQDQGKLEEA 590
                 69***********998 PP

  == domain 6  score: 7.1 bits;  conditional E-value: 0.0085
      TPR_17  15 aynnLAelllknGdlmtAr 33 
                 + nnL++ll+ +G+l++A+
  KOO21858.1 615 SINNLGRLLHDQGRLGEAE 633
                 679**************97 PP

>> TPR_3  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.2   0.0       0.4   3.8e+02      10      22 ..     379     391 ..     376     394 .. 0.82
   2 ?    1.1   0.0      0.45   4.3e+02       7      20 ..     409     422 ..     406     425 .. 0.90
   3 ?   -1.8   0.0       3.5   3.3e+03      14      26 ..     458     468 ..     452     469 .. 0.86
   4 ?   -1.4   0.0       2.7   2.5e+03      14      27 ..     500     511 ..     499     514 .. 0.86
   5 ?    3.1   0.0       0.1        99       4      20 ..     532     548 ..     530     552 .. 0.87
   6 ?    3.2   0.0     0.098        93       4      22 ..     574     592 ..     573     595 .. 0.84
   7 ?   -1.0   0.0         2   1.9e+03      10      23 ..     622     635 ..     618     637 .. 0.86

  Alignments for each domain:
  == domain 1  score: 1.2 bits;  conditional E-value: 0.4
                 HHHHTT-HHHHHH CS
       TPR_3  10 efynkkkyqeAre 22 
                  +++++k++eA +
  KOO21858.1 379 LLQDQGKLDEAGG 391
                 58*********65 PP

  == domain 2  score: 1.1 bits;  conditional E-value: 0.45
                 HHHHHHHTT-HHHH CS
       TPR_3   7 yAaefynkkkyqeA 20 
                 +A  +y ++k++ A
  KOO21858.1 409 LATLLYAQGKLDGA 422
                 68899*******99 PP

  == domain 3  score: -1.8 bits;  conditional E-value: 3.5
                 TT-HHHHHHH..H CS
       TPR_3  14 kkkyqeArelfsY 26 
                 ++k++eA  l  Y
  KOO21858.1 458 QGKLDEAGVL--Y 468
                 9******888..5 PP

  == domain 4  score: -1.4 bits;  conditional E-value: 2.7
                 TT-HHHHHHH..HH CS
       TPR_3  14 kkkyqeArelfsYa 27 
                 ++k++eA  l  Y+
  KOO21858.1 500 QGKLDEAGVL--YR 511
                 8******999..65 PP

  == domain 5  score: 3.1 bits;  conditional E-value: 0.1
                 HHHHHHHHHHTT-HHHH CS
       TPR_3   4 lysyAaefynkkkyqeA 20 
                 + +++  +++++k++eA
  KOO21858.1 532 ISKLGGLLHDQGKLDEA 548
                 7788999*********9 PP

  == domain 6  score: 3.2 bits;  conditional E-value: 0.098
                 HHHHHHHHHHTT-HHHHHH CS
       TPR_3   4 lysyAaefynkkkyqeAre 22 
                 +  ++  +++++k++eA +
  KOO21858.1 574 ISNLGLLLQDQGKLEEAGG 592
                 5678999*********965 PP

  == domain 7  score: -1.0 bits;  conditional E-value: 2
                 HHHHTT-HHHHHHH CS
       TPR_3  10 efynkkkyqeArel 23 
                  +++++++ eA+ l
  KOO21858.1 622 LLHDQGRLGEAETL 635
                 68*********998 PP

>> TPR_14  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.5   0.00079      0.74       3      30 ..     372     399 ..     370     402 .. 0.91
   2 ?    7.0   0.2     0.013        12       7      30 ..     409     432 ..     408     444 .. 0.89
   3 ?    3.2   0.3      0.22     2e+02       7      30 ..     451     474 ..     450     485 .. 0.88
   4 ?    7.7   0.3    0.0076       7.2       7      30 ..     493     516 ..     487     528 .. 0.88
   5 ?   -0.9   0.0       4.4   4.1e+03       6      25 ..     534     553 ..     532     554 .. 0.84
   6 ?    4.5   0.2     0.085        80       7      30 ..     577     600 ..     576     612 .. 0.85
   7 ?    3.6   0.1      0.16   1.6e+02       7      27 ..     619     639 ..     618     646 .. 0.91
   8 ?    4.8   0.5     0.066        63       4      27 ..     658     681 ..     655     700 .. 0.84

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00079
      TPR_14   3 allalaeallalGdpdeAiallrralal 30 
                 ++ +l+++l  +G++deA  llr+al++
  KOO21858.1 372 LQDRLGRLLQDQGKLDEAGGLLREALEA 399
                 67899*********************96 PP

  == domain 2  score: 7.0 bits;  conditional E-value: 0.013
      TPR_14   7 laeallalGdpdeAiallrralal 30 
                 la +l+a+G++d+A  llr+al++
  KOO21858.1 409 LATLLYAQGKLDGAGMLLREALEA 432
                 7899******************96 PP

  == domain 3  score: 3.2 bits;  conditional E-value: 0.22
      TPR_14   7 laeallalGdpdeAiallrralal 30 
                 l+ +l+a+G++deA  l+ +al++
  KOO21858.1 451 LGLLLRAQGKLDEAGVLYGEALEA 474
                 67899*********9999999985 PP

  == domain 4  score: 7.7 bits;  conditional E-value: 0.0076
      TPR_14   7 laeallalGdpdeAiallrralal 30 
                 l+ +l+a+G++deA  l+r+al++
  KOO21858.1 493 LGGLLRAQGKLDEAGVLYREALEA 516
                 7889******************95 PP

  == domain 5  score: -0.9 bits;  conditional E-value: 4.4
      TPR_14   6 alaeallalGdpdeAiallr 25 
                 +l+ +l  +G++deA  llr
  KOO21858.1 534 KLGGLLHDQGKLDEAGVLLR 553
                 58889999******977776 PP

  == domain 6  score: 4.5 bits;  conditional E-value: 0.085
      TPR_14   7 laeallalGdpdeAiallrralal 30 
                 l+ +l  +G+++eA  llr+al++
  KOO21858.1 577 LGLLLQDQGKLEEAGGLLREALDA 600
                 56778899*************985 PP

  == domain 7  score: 3.6 bits;  conditional E-value: 0.16
      TPR_14   7 laeallalGdpdeAiallrra 27 
                 l+++l  +G++ eA++ll +a
  KOO21858.1 619 LGRLLHDQGRLGEAETLLLEA 639
                 7999*************9887 PP

  == domain 8  score: 4.8 bits;  conditional E-value: 0.066
      TPR_14   4 llalaeallalGdpdeAiallrra 27 
                 ++ la++ +a+G+ + A+al +++
  KOO21858.1 658 QAWLADVRRAQGRIESARALVDAR 681
                 6789***************99986 PP

>> 4HBT  Thioesterase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.1   0.00023      0.22       3      68 ..     727     798 ..     725     806 .. 0.91

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 0.00023
                 SB-HHHHHHHHHHHHHHHHHHTTST......TEEEEEEEEEEEESS-BBTTCEEEEEEEEEEEESSEEEEEE CS
        4HBT   3 vvhgGvylallDeaagaalrslggr......gilvvvvelsidflrpvrlgdeltvearvlrlgrtsavvev 68 
                 +++++ yl  l+ a++++    g++      g  +vv++   +f++  ++ ++++++ +v  +  +s+ + +
  KOO21858.1 727 HMNNASYLVHLELARWEMGVATGFAthlgrsGASFVVASAFTRFRKELKPLQPFEIHSTVHGADERSMWFLQ 798
                 89********************************************************99888777776655 PP

>> Acyl-ACP_TE  Acyl-ACP thioesterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   0.0    0.0004      0.37     163     178 ..     719     734 ..     696     740 .. 0.78

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.0004
  Acyl-ACP_TE 163 ysDlDlnqHvNNvkYl 178
                   +D+D + H+NN+ Yl
   KOO21858.1 719 LFDIDQFLHMNNASYL 734
                  48*************8 PP

>> TPR_21  Tetratricopeptide repeat-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.8   1.1    0.0026       2.4     107     177 ..     364     434 ..     352     446 .. 0.84
   2 ?    4.2   0.6     0.033        31     152     178 ..     451     477 ..     408     489 .. 0.62
   3 ?    5.9   0.1    0.0096         9     153     178 ..     494     519 ..     477     532 .. 0.87
   4 ?   -0.9   1.0       1.2   1.1e+03      90     143 ..     585     643 ..     580     681 .. 0.54

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 0.0026
      TPR_21 107 kdeelkalarlRLarvllaekkydeAlktLeakkeeafaalvaelrGDilvaqgkldeAraaYqaAlaale 177
                 ++e  ++  + RL r+l +++k+deA  +L ++ e++ +    +    +l+aqgkld A    ++Al+a  
  KOO21858.1 364 REERATSALQDRLGRLLQDQGKLDEAGGLLREALEASHTLISINNLATLLYAQGKLDGAGMLLREALEASR 434
                 555666667789*********************99999999988889999*******99999888888765 PP

  == domain 2  score: 4.2 bits;  conditional E-value: 0.033
      TPR_21 152 rGDilvaqgkldeAraaYqaAlaalee 178
                  G +l aqgkldeA   Y +Al+a  +
  KOO21858.1 451 LGLLLRAQGKLDEAGVLYGEALEARRA 477
                 477899***************998765 PP

  == domain 3  score: 5.9 bits;  conditional E-value: 0.0096
      TPR_21 153 GDilvaqgkldeAraaYqaAlaalee 178
                 G +l aqgkldeA   Y++Al+a  +
  KOO21858.1 494 GGLLRAQGKLDEAGVLYREALEARRA 519
                 7799*****************98765 PP

  == domain 4  score: -0.9 bits;  conditional E-value: 1.2
      TPR_21  90 gdlaaAkaqLewvlekak....deelkalarl.RLarvllaekkydeAlktLeakkeea 143
                 g+l++A   L+++l+ ++    d++ ++la++  L r+l +++ + eA ++L ++++  
  KOO21858.1 585 GKLEEAGGLLREALDAQRatlgDRHPDTLASInNLGRLLHDQGRLGEAETLLLEAHHGC 643
                 55555554444444443211115566667776348888888888888888875555433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (864 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       291  (0.0162307); expected 358.6 (0.02)
Passed bias filter:                      231  (0.0128842); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                        20  (0.00111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              19  [number of targets reported over threshold]
# CPU time: 0.67u 0.23s 00:00:00.90 Elapsed: 00:00:00.48
# Mc/sec: 5442.86
//
Query:       KOO21859.1  [L=425]
Description: hypothetical protein Ctob_002079 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (425 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2781  (0.155112); expected 358.6 (0.02)
Passed bias filter:                      520  (0.0290033); expected 358.6 (0.02)
Passed Vit filter:                        65  (0.00362541); expected 17.9 (0.001)
Passed Fwd filter:                        16  (0.000892409); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.87u 0.31s 00:00:01.18 Elapsed: 00:00:00.46
# Mc/sec: 2801.57
//
Query:       KOO21860.1  [L=365]
Description: aspartyl proteinase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      1e-79  268.2   0.0    1.2e-79  268.0   0.0    1.0  1  Asp       Eukaryotic aspartyl protease
    2.2e-09   37.8   0.2    9.6e-06   25.9   0.0    2.2  2  TAXi_N    Xylanase inhibitor N-terminal
      3e-05   23.8   0.0    8.8e-05   22.3   0.0    1.9  1  TAXi_C    Xylanase inhibitor C-terminal


Domain annotation for each model (and alignments):
>> Asp  Eukaryotic aspartyl protease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  268.0   0.0     2e-83   1.2e-79       1     314 [.      40     353 ..      40     354 .. 0.95

  Alignments for each domain:
  == domain 1  score: 268.0 bits;  conditional E-value: 2e-83
                 EEEEEEEETTTTEEEEEEEETT--SEEEEBTTESTSHCHHTSS-B-GGG-TT-EEEEEEEEEECTTSEEEEEEEEEEEEETTEEEEEEEEEEEEEESSH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
         Asp   1 eYfgeisiGtpeqkftvifDTGSsdlWVpsskckkssackshstydpskSstykkngkslsisYGdgsvsGflsqdtvkvggltvknqefgeatkepgs 99 
                 +Y+geis+Gtp+qk++v+ DTGSs+lWV +           h+ yd++kS+t   ng++++i+YG+g vsGf+s+d v++g++ ++   f+e++++ g 
  KOO21860.1  40 QYYGEISVGTPPQKLEVVYDTGSSNLWVANFAE------GRHHYYDSRKSATHTVNGSTFHIQYGSGPVSGFYSRDVVTMGDIPLTSYLFAEVNNTAGL 132
                 7***************************87655......58******************************************************9986 PP

                 ..HHTTSSSSEEEE-S-GGGSCGGSCCHHHHHHHTTSSSSSEEEEEE-STTSSEEEEEESSEEGGGEEEEEEEEEESS.....TSSTEEEEEEEEETTE CS
                 ..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.....xxxxxxxxxxxxxxxx RF
         Asp 100 ..tflaakfdGiLGlgfkeisveeatpvfdnlvsqglikepvfsvylnreeeeggeivfGgvDeskykGsltyvpvts.....kgywqielesvtvggk 191
                     +  kfdGi G+g+++isv+++ ++   lv+ g ++epvf++yl  ++ + ge+v+Ggv++++++G++ yvpv        gyw+i+l+++t+ gk
  KOO21860.1 133 gpAYALGKFDGICGMGLDDISVDGVPTPLMALVASGKLSEPVFAFYLG-HDGAAGELVLGGVNPAHFTGEFKYVPVIPtatnkFGYWEISLDNITIAGK 230
                 11555668*****************999*******************9.9999***********************9877777799************* PP

                 EEEEEEEEEEEEETTCSSEEEEHHHHHHHHHHHTTEEEET....TCEEEEETTGGGGSEEEEEEETTEEEEEEGGGGEEEESSSTTSEEEESE....EE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx....xx RF
         Asp 192 tvlcssgcqailDtGTsllalptsivekiakaigakkses....egeyvvdCdslsslpdisftiggakitvpvselvlkeeeseesqCilgl....vs 282
                 +v  ss  +ai+D+GTslla+p+  +++ia a+gak        ++ey++ Cd     pdi+++i ga++ ++ ++++l+++     +C++++    v+
  KOO21860.1 231 SV--SSAHRAIIDSGTSLLAAPSADIKAIAAAVGAKPLGPipplNKEYTIPCDG--PGPDITISIAGAEYVLTKKDYTLQNGP----ECLFAMtgldVP 321
                 **..999****************************9988788889********7..99************************5....799999898*** PP

                 CCTSSSEEEEHHHHTTEEEEEETTTTEEEEEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
         Asp 283 eeegdlwiLGdvFlrsayvvfdldnnrvglAe 314
                  + g+l+iLGdvF+r  yv fd++ +++g+A+
  KOO21860.1 322 APAGPLYILGDVFMRAHYVKFDYEHRQLGFAK 353
                 *******************************7 PP

>> TAXi_N  Xylanase inhibitor N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.9   0.0   1.6e-09   9.6e-06       1      51 [.      41      86 ..      41      91 .. 0.82
   2 !   10.6   0.0   8.4e-05       0.5      78     178 .]      90     192 ..      79     192 .. 0.68

  Alignments for each domain:
  == domain 1  score: 25.9 bits;  conditional E-value: 1.6e-09
      TAXi_N  1 YlvsisiGtppqplklvvDtGsdltWvqCkpckacssqkkpvfdpskssty 51
                Y+ +is+Gtppq+l +v DtGs+ +Wv        ++ +++++d +ks t+
  KOO21860.1 41 YYGEISVGTPPQKLEVVYDTGSSNLWVAN-----FAEGRHHYYDSRKSATH 86
                999************************98.....44556666666666665 PP

  == domain 2  score: 10.6 bits;  conditional E-value: 8.4e-05
      TAXi_N  78 tceyeisygadgssssGvlatdtltlsstdgksvkvpnlvfGCgksnlgglaagadGilGLGrgklS.......lvsqlaskgslgnkFsyCLssssss 169
                   +++i+yg  g  +sG++++d++t+ ++  +s  ++++  + g      l  + dGi G+G  ++S       l++ +as +  + +F+ +L   ++ 
  KOO21860.1  90 GSTFHIQYG-SG-PVSGFYSRDVVTMGDIPLTSYLFAEVNNTAGLGPAYAL-GKFDGICGMGLDDISvdgvptpLMALVASGKLSEPVFAFYL--GHDG 183
                 557889996.55.9************7775566666654444444223333.3689*********8833322223444555557788999999..8889 PP

      TAXi_N 170 ssgvlffGd 178
                 + g l++G+
  KOO21860.1 184 AAGELVLGG 192
                 999999886 PP

>> TAXi_C  Xylanase inhibitor C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.3   0.0   1.5e-08   8.8e-05      92     160 ..     284     352 ..     205     353 .. 0.84

  Alignments for each domain:
  == domain 1  score: 22.3 bits;  conditional E-value: 1.5e-08
                 ---EEEEESSS-EEEE-GGGGEEE-SSSEEEE-EEE-...-S--SSSEEE-HHHHBTS-EEEETTTTEEEEE CS
      TAXi_C  92 vPtitlvleggaewtisgenllvkveggvvClafves...gvagesavviGglqlednllvFDleksrlgFs 160
                  P+it+  + gae  ++++++ +++ ++  Cl  +++   +++  + +++G + ++ +++ FD e ++lgF+
  KOO21860.1 284 GPDITISIA-GAEYVLTKKDYTLQNGPE--CLFAMTGldvPAPAGPLYILGDVFMRAHYVKFDYEHRQLGFA 352
                 59999**99.899***********8877..888888888899*****************************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (365 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       243  (0.0135535); expected 358.6 (0.02)
Passed bias filter:                      227  (0.0126611); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.45u 0.26s 00:00:00.71 Elapsed: 00:00:00.41
# Mc/sec: 2691.14
//
Query:       KOO21861.1  [L=174]
Description: hypothetical protein Ctob_002092 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    0.00014   21.4   0.0    0.00022   20.7   0.0    1.4  1  ABC_membrane_2  ABC transporter transmembrane region 2


Domain annotation for each model (and alignments):
>> ABC_membrane_2  ABC transporter transmembrane region 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.7   0.0   1.2e-08   0.00022      14      79 ..     108     173 ..      95     174 .] 0.91

  Alignments for each domain:
  == domain 1  score: 20.7 bits;  conditional E-value: 1.2e-08
  ABC_membrane_2  14 allllvlllllvlrtllsvlvaqldgklvkalvaknvraFvlsllkfallavpasfvnsalkYltq 79 
                      l ++++lll++++  +sv ++++ +++++al ak+   F+ + +++al + +a+ + ++ +Y++ 
      KOO21861.1 108 KLNFGLMLLLVLMNSGVSVIFSYVGRDFYSALSAKDQVLFLEKTANYALGLAVATPLTVLYEYHEG 173
                     56789999*******************************************************975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (174 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       358  (0.0199677); expected 358.6 (0.02)
Passed bias filter:                      222  (0.0123822); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.28s 00:00:00.65 Elapsed: 00:00:00.41
# Mc/sec: 1260.23
//
Query:       KOO21862.1  [L=493]
Description: ABC-type uncharacterized transport permease and ATPase component [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      9e-46  156.4   2.1    1.2e-45  156.0   2.1    1.1  1  ABC_membrane_2   ABC transporter transmembrane region 2
    4.9e-10   39.4   3.6    2.8e-09   36.9   3.6    1.9  1  SbmA_BacA        SbmA/BacA-like family
    1.1e-07   32.5   0.0      2e-07   31.6   0.0    1.5  1  ABC_tran         ABC transporter
    0.00079   18.9   0.2      0.012   15.0   0.1    2.2  2  FtsK_SpoIIIE     FtsK/SpoIIIE family
      0.001   18.7   0.1     0.0023   17.6   0.1    1.5  1  AAA_29           P-loop containing region of AAA domain
     0.0026   18.1   0.0      0.009   16.4   0.0    1.9  1  AAA_16           AAA ATPase domain
  ------ inclusion threshold ------
      0.012   14.8   0.1      0.021   14.0   0.1    1.3  1  DUF815           Protein of unknown function (DUF815)
      0.021   14.2   0.1      0.037   13.4   0.1    1.3  1  Mg_chelatase     Magnesium chelatase, subunit ChlI
      0.024   14.5   0.0      0.042   13.8   0.0    1.3  1  RsgA_GTPase      RsgA GTPase
      0.027   14.2   0.0      0.057   13.1   0.0    1.5  1  AAA_30           AAA domain
       0.06   12.8   0.1       0.11   11.9   0.1    1.5  1  NeA_P2           Nepovirus subgroup A polyprotein
      0.061   12.8   0.0       0.12   11.9   0.0    1.4  1  AAA_7            P-loop containing dynein motor region
      0.099   12.9   0.0       0.23   11.7   0.0    1.6  1  AAA_22           AAA domain
       0.12   12.1   0.0       0.28   10.9   0.0    1.5  1  Sigma54_activat  Sigma-54 interaction domain
       0.17   11.0   0.0       0.26   10.4   0.0    1.2  1  MCM              MCM P-loop domain


Domain annotation for each model (and alignments):
>> ABC_membrane_2  ABC transporter transmembrane region 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  156.0   2.1     1e-48   1.2e-45      71     269 .]       9     204 ..       5     204 .. 0.96

  Alignments for each domain:
  == domain 1  score: 156.0 bits;  conditional E-value: 1e-48
  ABC_membrane_2  71 nsalkYltqkLalafRkrLtkhllseYlknrtyYkvsnlderidnpDqritqDvekFtsslssLlsglvkpildvilftfiLwslsgtlglllll 165
                     +++ k+  ++Lal++R+++t  l ++Y ++++yYk+  +d +idnpDqrit+Dv  Ft+ +++++ +l+++++d+++f+ iL+s+  +l   +++
      KOO21862.1   9 QVLYKFQRARLALNWREWMTTELARQYYSDQAYYKI-EIDREIDNPDQRITEDVAAFTKVSLDFFITLMTAVIDLASFSGILYSIYPNLFY-AIF 101
                     67899******************************5.67777******************************************9998887.9** PP

  ABC_membrane_2 166 lyvllatvilriigpplgklvaeeeklegefRylhsrlitnaEeIAFyrGeevEkkqlqrrfkslidnlrrilsrrlrlgiieafvlkYlasilg 260
                     +y+ ++++ + ++g+ l+  +a++  +e+++Ry ++rl++naE+IAFy+Ge+ E +++  r+  ++ n r il     l++++  + +Yl+ il+
      KOO21862.1 102 VYAGVGSITTIKLGQALVGQNAQQLLREADLRYSLVRLRENAESIAFYQGEAQEAAEVSARLSGVVGNKRAILGTMRNLEFFTVGY-SYLIQILP 195
                     **************************************************************************************.******** PP

  ABC_membrane_2 261 yvlvalpif 269
                     +++v++ +f
      KOO21862.1 196 VLVVSPLYF 204
                     ****99877 PP

>> SbmA_BacA  SbmA/BacA-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.9   3.6   2.3e-12   2.8e-09      74     311 ..      10     251 ..       5     255 .. 0.75

  Alignments for each domain:
  == domain 1  score: 36.9 bits;  conditional E-value: 2.3e-12
   SbmA_BacA  74 vlnaffvshyifrWrtamn.....eyyis.kwdkl...reieGasqrvqedtmrfakiledlGvslvkaimtliaflPvlfelskkvkvlpilgeieks 163
                 vl +f      + Wr+ m+     +yy +  + k+   rei+   qr+ ed+  f+k+  d+ + l+ a++ l++f  +l+++  +             
  KOO21862.1  10 VLYKFQRARLALNWREWMTtelarQYYSDqAYYKIeidREIDNPDQRITEDVAAFTKVSLDFFITLMTAVIDLASFSGILYSIYPN------------- 95 
                 667777777888999988633333466542466666679****************************************9986544............. PP

   SbmA_BacA 164 lviaalvwslgGtvlllvvGiklpglefnnqkveaayrkelvygeddvdra........kpatlkelfkdvrknyfrlylhylyfniarilylqldnlf 254
                 l  a +v++ +G +  + +G  l+g + ++   ea  r  lv   ++++ +        ++a ++  ++ v  n   +      ++  ++ y+ l ++ 
  KOO21862.1  96 LFYAIFVYAGVGSITTIKLGQALVGQNAQQLLREADLRYSLVRLRENAESIafyqgeaqEAAEVSARLSGVVGNKRAILGTMRNLEFFTVGYSYLIQIL 194
                 4556666666777777777777777777777777777777775444433211111111134445555666777777777777778888888999999** PP

   SbmA_BacA 255 allllapsivagkitlGvlkqitnafgkvreslqylinsWttivellsiykrlrafe 311
                 ++l+++p  +ag++ lGv++q t af++v + l++++n+++ +  + +   rl +f 
  KOO21862.1 195 PVLVVSPLYFAGSVELGVITQSTGAFNHVLNDLSIIVNQFEGLSSFSAGLARLSTFV 251
                 ***************************************999888888777877775 PP

>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.6   0.0   1.7e-10     2e-07       2      43 ..     382     423 ..     381     479 .. 0.83

  Alignments for each domain:
  == domain 1  score: 31.6 bits;  conditional E-value: 1.7e-10
                 EEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran   2 knvslklkegekvaivGenGaGKStLlkllagllkpteGeil 43 
                  nvs+++++g+ + i+G++G+GKS++l+++agl +  +Ge++
  KOO21862.1 382 ANVSVDVHAGHHLLIMGNSGTGKSSMLRAMAGLWDRGSGEVT 423
                 69*************************************995 PP

>> FtsK_SpoIIIE  FtsK/SpoIIIE family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.4   0.0      0.15   1.7e+02     110     155 ..     124     169 ..     104     195 .. 0.75
   2 !   15.0   0.1     1e-05     0.012      34      59 ..     387     411 ..     369     412 .. 0.80

  Alignments for each domain:
  == domain 1  score: 1.4 bits;  conditional E-value: 0.15
                   HHHHHHHHHHHHHHH.HTT-SSHHHHHHHHHHHHHTT---B-TT-.. CS
  FtsK_SpoIIIE 110 eeLvkemeeryalfr.eagvrsiaaydgeiaedpldifgdvflvlDn 155
                   ++L+ e + ry+l r  ++++sia+y+ge++e+++++  +  +v  n
    KOO21862.1 124 QQLLREADLRYSLVRlRENAESIAFYQGEAQEAAEVSARLSGVVG-N 169
                   6788889999988874578999999********999988888874.3 PP

  == domain 2  score: 15.0 bits;  conditional E-value: 1e-05
                   EGGGS-..SEEEE--TTSSHHHHHHHH CS
  FtsK_SpoIIIE  34 dlkkma.shllvaGatgsGKStalntL 59 
                   d   +a  hll++G +g+GKS +l+++
    KOO21862.1 387 DV--HAgHHLLIMGNSGTGKSSMLRAM 411
                   44..4445*****************98 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.6   0.1     2e-06    0.0023      12      43 ..     381     412 ..     379     415 .. 0.83

  Alignments for each domain:
  == domain 1  score: 17.6 bits;  conditional E-value: 2e-06
      AAA_29  12 fdghtieidlkgatlltGpsGsGKSTllDAiq 43 
                 f + +++++     l++G+sG+GKS++l A++
  KOO21862.1 381 FANVSVDVHAGHHLLIMGNSGTGKSSMLRAMA 412
                 6677888885559***************9986 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   0.0   7.5e-06     0.009      18      50 ..     387     417 ..     376     489 .. 0.66

  Alignments for each domain:
  == domain 1  score: 16.4 bits;  conditional E-value: 7.5e-06
      AAA_16  18 rvrsgrpelvllsGesGvGKsslvrellralek 50 
                 +v++g  + +l+ G+sG+GKss++r+ +  + +
  KOO21862.1 387 DVHAG--HHLLIMGNSGTGKSSMLRAMAGLWDR 417
                 55555..89****************98855444 PP

>> DUF815  Protein of unknown function (DUF815)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.1   1.8e-05     0.021      51      74 ..     389     412 ..     376     417 .. 0.85

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 1.8e-05
      DUF815  51 lpannvLLwGarGtGKSslvkall 74 
                 ++ +++L++G+ GtGKSs+++a+ 
  KOO21862.1 389 HAGHHLLIMGNSGTGKSSMLRAMA 412
                 67899****************986 PP

>> Mg_chelatase  Magnesium chelatase, subunit ChlI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.1   3.1e-05     0.037      15      45 ..     384     414 ..     375     421 .. 0.84

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 3.1e-05
  Mg_chelatase  15 leiaaaGgHnlllvGppGsGKtmlakrlpsl 45 
                   + + +  gH+ll++G++G+GK+ + +++++l
    KOO21862.1 384 VSVDVHAGHHLLIMGNSGTGKSSMLRAMAGL 414
                   55667789**************999999876 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.0   3.5e-05     0.042      98     125 ..     390     417 ..     369     425 .. 0.76

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 3.5e-05
                  TTSEEEEECSTTSSHHHHHHHHCTT--- CS
  RsgA_GTPase  98 kdktsvlvGqSGvGKStLinallpelel 125
                  +++  +++G+SG GKS+++ a+++  + 
   KOO21862.1 390 AGHHLLIMGNSGTGKSSMLRAMAGLWDR 417
                  458899**************99886555 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.0   4.8e-05     0.057      20      49 ..     393     422 ..     384     429 .. 0.86

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 4.8e-05
      AAA_30  20 vavltGpAGtGKttalkalreaweaaggrv 49 
                   ++ G  GtGK+ +l+a++ +w++  g+v
  KOO21862.1 393 HLLIMGNSGTGKSSMLRAMAGLWDRGSGEV 422
                 46899******************9986555 PP

>> NeA_P2  Nepovirus subgroup A polyprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.1   9.5e-05      0.11      66     115 ..     279     329 ..     250     349 .. 0.77

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 9.5e-05
      NeA_P2  66 gpiddpekidwhyvltgeavppte.pvkadevvvvpqpkvvipspppvpkp 115
                  p+d+pe+  w+ +l g+  pp   pv a +   +    v    ppp+ +p
  KOO21862.1 279 QPVDEPERSLWDRILYGQRGPPSApPVGAADEAAAALAAVAASPPPPAASP 329
                 69****************999876257766655556656555555555545 PP

>> AAA_7  P-loop containing dynein motor region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0    0.0001      0.12      30      53 ..     388     411 ..     367     418 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 0.0001
       AAA_7  30 lknkkpvllvGptGtGKtviikdl 53 
                 +++++++l++G++GtGK+++++ +
  KOO21862.1 388 VHAGHHLLIMGNSGTGKSSMLRAM 411
                 6789***************98765 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   0.00019      0.23       6      28 ..     392     414 ..     388     479 .. 0.68

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.00019
      AAA_22   6 gilvvtGesGtGKTtllrrlleq 28 
                  +l+++G sGtGK+  lr ++  
  KOO21862.1 392 HHLLIMGNSGTGKSSMLRAMAGL 414
                 689*************9998755 PP

>> Sigma54_activat  Sigma-54 interaction domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   0.00023      0.28      11      44 ..     380     413 ..     373     425 .. 0.78

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00023
                      HHHHHHHHCTSSS-EEEECSTTSSHHHHHHHHHH CS
  Sigma54_activat  11 lleqikkvaktdlsvlitGesGtGKellaraihe 44 
                      l+++++  ++   ++li+G+sGtGK+ + ra+  
       KOO21862.1 380 LFANVSVDVHAGHHLLIMGNSGTGKSSMLRAMAG 413
                      55566666677799************99999865 PP

>> MCM  MCM P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.0   0.00022      0.26      53      83 ..     387     417 ..     369     423 .. 0.81

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00022
                 BBCSS-EEEEEESSTSTHHHHHHHHHHHSSS CS
         MCM  53 klrgdinvllvgdpgtaKsqlLkyveklapr 83 
                  + +  ++l++g++gt+Ks +L++++ l +r
  KOO21862.1 387 DVHAGHHLLIMGNSGTGKSSMLRAMAGLWDR 417
                 4667789****************99877666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (493 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       566  (0.031569); expected 358.6 (0.02)
Passed bias filter:                      463  (0.0258241); expected 358.6 (0.02)
Passed Vit filter:                        95  (0.00529868); expected 17.9 (0.001)
Passed Fwd filter:                        15  (0.000836633); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              15  [number of targets reported over threshold]
# CPU time: 0.55u 0.27s 00:00:00.82 Elapsed: 00:00:00.41
# Mc/sec: 3646.00
//
Query:       KOO21863.1  [L=137]
Description: rubredoxin family protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.1e-05   23.9   7.3     0.0014   18.7   7.3    2.3  1  Rubredoxin      Rubredoxin
    0.00033   20.5   1.1      0.001   18.9   1.1    1.8  1  Zn_ribbon_SprT  SprT-like zinc ribbon domain
     0.0092   16.1   1.9      0.015   15.4   0.6    2.0  2  Zn-ribbon_8     Zinc ribbon domain
  ------ inclusion threshold ------
      0.014   15.4   0.4      0.024   14.6   0.5    1.6  1  HypA            Hydrogenase/urease nickel incorporation, meta
      0.077   12.7   7.3       0.96    9.2   0.5    2.8  3  Rubredoxin_2    Rubredoxin metal binding domain
       0.27   11.2   2.7         20    5.2   0.2    2.9  3  PhnA_Zn_Ribbon  PhnA Zinc-Ribbon
       0.36   10.8   4.9       0.93    9.5   4.5    1.9  2  Zn_Tnp_IS1595   Transposase zinc-ribbon domain
       0.54   10.0   3.3         13    5.7   0.1    3.0  3  zinc_ribbon_10  Predicted integral membrane zinc-ribbon metal
       0.66    9.5   4.2       0.87    9.2   0.0    2.4  3  TF_Zn_Ribbon    TFIIB zinc-binding
        1.2    9.3   7.4        2.3    8.4   0.3    2.4  2  UPF0547         Uncharacterised protein family UPF0547
        2.6    8.0   7.3         10    6.1   0.2    2.8  3  Nudix_N_2       Nudix N-terminal
        2.7    7.4   8.4         12    5.3   0.3    3.1  3  zf-RanBP        Zn-finger in Ran binding protein and others


Domain annotation for each model (and alignments):
>> Rubredoxin  Rubredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.7   7.3   9.1e-07    0.0014       2      47 .]      64     100 ..      63     100 .. 0.89

  Alignments for each domain:
  == domain 1  score: 18.7 bits;  conditional E-value: 9.1e-07
                 EEETTT-BEEETTTBBGGGTB-TT--GGGS-TT-BBTTTB-BGGGE CS
  Rubredoxin   2 yeCkvCgyvYdpakGdpdegiapgTkFedlPddWvCPdCgvekeqF 47 
                 + C  Cgy+Y+p+         ++ +Fe+l   W+CP+C+ ++  F
  KOO21863.1  64 WVCADCGYIYEPS---------ADRPFEELRPRWKCPQCAGPRRRF 100
                 99**********7.........5678999999********999887 PP

>> Zn_ribbon_SprT  SprT-like zinc ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.9   1.1   6.7e-07     0.001       4      32 ..      63      95 ..      63     102 .. 0.94

  Alignments for each domain:
  == domain 1  score: 18.9 bits;  conditional E-value: 6.7e-07
  Zn_ribbon_SprT  4 vYrCtgCgreythhlsirrhn......YrCrrCkg 32
                    +++C +Cg  y ++ s +r        + C++C+g
      KOO21863.1 63 EWVCADCG--YIYEPSADRPFeelrprWKCPQCAG 95
                    5*******..***********************96 PP

>> Zn-ribbon_8  Zinc ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.0       2.4   3.7e+03       8      17 ..       8      16 ..       6      22 .. 0.61
   2 !   15.4   0.6     1e-05     0.015       6      38 ..      64      99 ..      63     101 .. 0.69

  Alignments for each domain:
  == domain 1  score: -1.8 bits;  conditional E-value: 2.4
  Zn-ribbon_8  8 CeeCghefev 17
                 C +C    e+
   KOO21863.1  8 CLACT-ASEA 16
                 66665.4444 PP

  == domain 2  score: 15.4 bits;  conditional E-value: 1e-05
  Zn-ribbon_8  6 YrCeeCghefevlqsis..daplta.CPeCgsevrr 38
                   C +Cg  +e+ +     +  +   CP+C ++ rr
   KOO21863.1 64 WVCADCGYIYEPSADRPfeELRPRWkCPQCAGPRRR 99
                 57*********554444313335557****997776 PP

>> HypA  Hydrogenase/urease nickel incorporation, metallochaperone, hypA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.6   0.5   1.6e-05     0.024      67     100 ..      60     101 ..       8     112 .. 0.80

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 1.6e-05
                 E--EEEETTTS-EEECHHH.HH.......S-TTTSSS-EEEE CS
        HypA  67 vpvkvrCreCgkefeleek.al.......rCpkCgsadveiv 100
                  p +  C +Cg+ +e +++  +       +Cp+C + + ++v
  KOO21863.1  60 WPGEWVCADCGYIYEPSADrPFeelrprwKCPQCAGPRRRFV 101
                 58899**********66542225579999*****99876665 PP

>> Rubredoxin_2  Rubredoxin metal binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.0      0.86   1.3e+03      17      26 ..       8      17 ..       7      19 .. 0.77
   2 ?    6.4   0.4    0.0048       7.2       1       9 [.      64      72 ..      64      74 .. 0.86
   3 ?    9.2   0.5   0.00064      0.96       9      20 ..      82      93 ..      81      95 .. 0.80

  Alignments for each domain:
  == domain 1  score: -0.8 bits;  conditional E-value: 0.86
  Rubredoxin_2 17 CpsCgsWntl 26
                  C +C + + l
    KOO21863.1  8 CLACTASEAL 17
                  8899887766 PP

  == domain 2  score: 6.4 bits;  conditional E-value: 0.0048
  Rubredoxin_2  1 YvCsqCGfe 9 
                  +vC +CG+ 
    KOO21863.1 64 WVCADCGYI 72
                  89*****96 PP

  == domain 3  score: 9.2 bits;  conditional E-value: 0.00064
  Rubredoxin_2  9 esakwfGrCpsC 20
                  e  +  ++Cp+C
    KOO21863.1 82 EELRPRWKCPQC 93
                  566788****** PP

>> PhnA_Zn_Ribbon  PhnA Zinc-Ribbon
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.1   0.0      0.63   9.4e+02       5      14 ..       8      17 ..       7      41 .. 0.72
   2 ?    4.2   0.1     0.028        42      20      27 ..      64      71 ..      62      71 .. 0.91
   3 ?    5.2   0.2     0.013        20       4       9 ..      89      94 ..      83      95 .. 0.81

  Alignments for each domain:
  == domain 1  score: -0.1 bits;  conditional E-value: 0.63
  PhnA_Zn_Ribbon  5 CplCaSeytY 14
                    C  C +++++
      KOO21863.1  8 CLACTASEAL 17
                    9999999888 PP

  == domain 2  score: 4.2 bits;  conditional E-value: 0.028
  PhnA_Zn_Ribbon 20 lvCpeCah 27
                    +vC +C++
      KOO21863.1 64 WVCADCGY 71
                    9*****96 PP

  == domain 3  score: 5.2 bits;  conditional E-value: 0.013
  PhnA_Zn_Ribbon  4 kCplCa 9 
                    kCp+Ca
      KOO21863.1 89 KCPQCA 94
                    899997 PP

>> Zn_Tnp_IS1595  Transposase zinc-ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   4.5   0.00062      0.93      14      43 ..      59      93 ..      49      96 .. 0.78
   2 ?    4.0   0.9     0.033        49      19      33 ..      88     102 ..      77     105 .. 0.72

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 0.00062
  Zn_Tnp_IS1595 14 rWpngfvCPhCgsr.kayrikt....rglfqCkeC 43
                    Wp+  vC  Cg+  ++   +     r +++C  C
     KOO21863.1 59 YWPGEWVCADCGYIyEPSADRPfeelRPRWKCPQC 93
                   6***********77655544448999*******99 PP

  == domain 2  score: 4.0 bits;  conditional E-value: 0.033
  Zn_Tnp_IS1595  19 fvCPhCgsrkayrik 33 
                      CP C++ + +++k
     KOO21863.1  88 WKCPQCAGPRRRFVK 102
                    458888877666665 PP

>> zinc_ribbon_10  Predicted integral membrane zinc-ribbon metal-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.6   0.1      0.31   4.7e+02      20      30 ..       3      13 ..       1      20 [. 0.83
   2 ?    5.7   0.1    0.0084        13      40      52 ..      59      71 ..      49      73 .. 0.77
   3 ?    3.0   0.1     0.058        87      44      50 ..      87      93 ..      79      95 .. 0.84

  Alignments for each domain:
  == domain 1  score: 0.6 bits;  conditional E-value: 0.31
  zinc_ribbon_10 20 ryalICskChs 30
                    r+al C  C  
      KOO21863.1  3 RVALLCLACTA 13
                    78999999976 PP

  == domain 2  score: 5.7 bits;  conditional E-value: 0.0084
  zinc_ribbon_10 40 leevkyrCpkCga 52
                    + + +++C+ Cg 
      KOO21863.1 59 YWPGEWVCADCGY 71
                    45569******97 PP

  == domain 3  score: 3.0 bits;  conditional E-value: 0.058
  zinc_ribbon_10 44 kyrCpkC 50
                    +++Cp+C
      KOO21863.1 87 RWKCPQC 93
                    8****** PP

>> TF_Zn_Ribbon  TFIIB zinc-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.6   0.2       5.8   8.7e+03      21      26 ..       7      12 ..       6      13 .. 0.70
   2 ?    9.2   0.0   0.00058      0.87      18      30 ..      62      74 ..      48      83 .. 0.84
   3 ?    1.9   0.1      0.11   1.6e+02       2       9 ..      89      96 ..      88     103 .. 0.79

  Alignments for each domain:
  == domain 1  score: -3.6 bits;  conditional E-value: 5.8
                  EESSSS CS
  TF_Zn_Ribbon 21 vCtdCG 26
                  +C +C+
    KOO21863.1  7 LCLACT 12
                  688886 PP

  == domain 2  score: 9.2 bits;  conditional E-value: 0.00058
                  TCEEESSSSBEEE CS
  TF_Zn_Ribbon 18 gelvCtdCGlVle 30
                  ge vC dCG++ e
    KOO21863.1 62 GEWVCADCGYIYE 74
                  899******9877 PP

  == domain 3  score: 1.9 bits;  conditional E-value: 0.11
                  EETTTTCE CS
  TF_Zn_Ribbon  2 kCPnCgst 9 
                  kCP C ++
    KOO21863.1 89 KCPQCAGP 96
                  89999775 PP

>> UPF0547  Uncharacterised protein family UPF0547
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.4   0.3    0.0015       2.3      16      25 ..      65      74 ..      65      75 .. 0.86
   2 ?    3.6   1.9     0.047        70       2       7 ..      89      94 ..      89      96 .. 0.87

  Alignments for each domain:
  == domain 1  score: 8.4 bits;  conditional E-value: 0.0015
     UPF0547 16 fCphCGyvFq 25
                +C++CGy+++
  KOO21863.1 65 VCADCGYIYE 74
                5******987 PP

  == domain 2  score: 3.6 bits;  conditional E-value: 0.047
     UPF0547  2 vCPeCe 7 
                +CP+C+
  KOO21863.1 89 KCPQCA 94
                7****7 PP

>> Nudix_N_2  Nudix N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.1       2.1   3.1e+03      25      28 ..       8      11 ..       6      18 .. 0.66
   2 ?    5.5   0.3     0.011        16      24      31 ..      65      72 ..      64      74 .. 0.91
   3 ?    6.1   0.2    0.0068        10      17      28 ..      82      93 ..      76     102 .. 0.73

  Alignments for each domain:
  == domain 1  score: -1.8 bits;  conditional E-value: 2.1
                ETTT CS
   Nudix_N_2 25 CpaC 28
                C aC
  KOO21863.1  8 CLAC 11
                5555 PP

  == domain 2  score: 5.5 bits;  conditional E-value: 0.011
                EETTTTEE CS
   Nudix_N_2 24 vCpaCgti 31
                vC++Cg+i
  KOO21863.1 65 VCADCGYI 72
                9******9 PP

  == domain 3  score: 6.1 bits;  conditional E-value: 0.0068
                T-SS-EEEETTT CS
   Nudix_N_2 17 gDnreRlvCpaC 28
                ++ r+R  Cp+C
  KOO21863.1 82 EELRPRWKCPQC 93
                566777777777 PP

>> zf-RanBP  Zn-finger in Ran binding protein and others
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.4   0.2      0.13     2e+02      21      26 ..       8      13 ..       4      15 .. 0.82
   2 ?    4.4   0.2     0.016        24       3      12 ..      62      71 ..      61      72 .. 0.87
   3 ?    5.3   0.3     0.008        12       4      10 ..      87      93 ..      85      97 .. 0.78

  Alignments for each domain:
  == domain 1  score: 1.4 bits;  conditional E-value: 0.13
                -TTT-- CS
    zf-RanBP 21 CvaCqa 26
                C+aC a
  KOO21863.1  8 CLACTA 13
                99**98 PP

  == domain 2  score: 4.4 bits;  conditional E-value: 0.016
                SSEE-SSS-- CS
    zf-RanBP  3 gdWdCskClv 12
                g W C  C++
  KOO21863.1 62 GEWVCADCGY 71
                89******97 PP

  == domain 3  score: 5.3 bits;  conditional E-value: 0.008
                SEE-SSS CS
    zf-RanBP  4 dWdCskC 10
                +W+C+ C
  KOO21863.1 87 RWKCPQC 93
                5888888 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (137 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       605  (0.0337442); expected 358.6 (0.02)
Passed bias filter:                      452  (0.0252106); expected 358.6 (0.02)
Passed Vit filter:                        59  (0.00329076); expected 17.9 (0.001)
Passed Fwd filter:                        15  (0.000836633); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.40u 0.21s 00:00:00.61 Elapsed: 00:00:00.37
# Mc/sec: 1105.97
//
Query:       KOO21864.1  [L=151]
Description: hypothetical protein Ctob_002094, partial [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (151 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       395  (0.0220313); expected 358.6 (0.02)
Passed bias filter:                      279  (0.0155614); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.21s 00:00:00.56 Elapsed: 00:00:00.35
# Mc/sec: 1292.08
//
Query:       KOO21865.1  [L=368]
Description: hypothetical protein Ctob_002080 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.072   11.8  18.4      0.094   11.4  18.4    1.1  1  Hamartin  Hamartin protein
        1.1    9.1  18.9        1.5    8.8  18.9    1.1  1  TFIIA     Transcription factor IIA, alpha/beta subunit


Domain annotation for each model (and alignments):
>> Hamartin  Hamartin protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4  18.4     1e-05     0.094     331     553 ..     117     344 ..      96     365 .. 0.57

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 1e-05
    Hamartin 331 Pssvcgmttppsspgivptte.lelsssasllsskvsstpeaagkatpetTPakssrklppslsesavvvalpassrksspprkdeks.esskpdlskq 427
                  s++c ++  ps  +++++   + +s  +s   s+ s tp+a   +  ++ P++s r  ++ + +++ +++++++   s++p++++   e+    +++ 
  KOO21865.1 117 ASASCPVSRAPSPVPSLNMARdVLSSARTSTSGSQRSMTPSA-RSSARTASPMASGR--SSASGSQFSSRSVSSNG--SARPKTQKDFeENRLDRMARA 210
                 458899999998888888777787888888999999999997.66666699*****9..78888888888888888..666666555535555566666 PP

    Hamartin 428 eevenekeleeslkskssvtlse.......Lsdvikel.leaesedsvekeeeeaaisqelseiteek.ketlvsrggldspfsrtleslaksqrrkrl 517
                 + ++++k+le +++   ++++s+        ++ i+e+ +e   e + + ++e++a++++ +e   ++  e    r++        +++  ++++ +rl
  KOO21865.1 211 QAAQEQKKLEAAKR---AAQRSKrvaglmiHPEKIEEQkRERAREAAAKLRSEREAAERDAAEAIAAReMEA-EARKAHAAVAGAAAQQRLRERKAERL 305
                 66666666666655...3333333334443333333332444445555555566666666644444430333.33333322233333333333336666 PP

    Hamartin 518 asalssesisdaegaatkke...aksskeaesslekeks 553
                 + +  +++  + ++  ++++   ++++k ++++l++e s
  KOO21865.1 306 EEQRRQAEALAEQQLEAERAadeQRRQKAEQRRLRNETS 344
                 666666644444443333332223355555555555544 PP

>> TFIIA  Transcription factor IIA, alpha/beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.8  18.9   0.00016       1.5      86     308 ..     126     343 ..      71     367 .. 0.28

  Alignments for each domain:
  == domain 1  score: 8.8 bits;  conditional E-value: 0.00016
       TFIIA  86 tsqslpslvipagksvqslt.anssaataatfslpakleppvqipagvtlqtasg.qlykvnv..........qasgaqqiaaqplqqvvqqsqgsaaq 172
                 +++  psl ++    v s   +++s +++ ++++ a ++     p     ++asg q  + +v          q+   ++++ +++  +  q      q
  KOO21865.1 126 APSPVPSLNMARD--VLSSArTSTS-GSQRSMTPSARSSARTASPMASGRSSASGsQFSSRSVssngsarpktQKDFEENRLDRMARAQAAQ-----EQ 216
                 1222222222211..1111111111.222233333333332222222222222222111111111112111111111122221111111111.....11 PP

       TFIIA 173 ssvaalqaqsqqaqalaepqqqlekqqqqqqqqqqqqqqqqvqqqqqe..............esqqaqqasqeqvag.sqvessqtdgaedaleeespv 256
                 ++++a +                                +++q    +              e+q++++a + + +  s+ e++++d ae  ++   ++
  KOO21865.1 217 KKLEAAK--------------------------------RAAQ----RskrvaglmihpekiEEQKRERAREAAAKLrSEREAAERDAAEAIAAR--EM 277
                 1111111................................1111....011234444433332222222221111111112222222222211111..11 PP

       TFIIA 257 .legelsaeeeaga.qkeelsreeidrire..........ealkakelekeskkkkr.aee.ssla 308
                   e+++++ + aga  ++ l++++++r++e          ++l+a+  ++e++++k+ +++ ++ +
  KOO21865.1 278 eAEARKAHAAVAGAaAQQRLRERKAERLEEqrrqaealaeQQLEAERAADEQRRQKAeQRRlRNET 343
                 111111111111110112222222222211133332222244444444444444433233333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (368 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2493  (0.139048); expected 358.6 (0.02)
Passed bias filter:                      547  (0.0305092); expected 358.6 (0.02)
Passed Vit filter:                       116  (0.00646996); expected 17.9 (0.001)
Passed Fwd filter:                        36  (0.00200792); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.85u 0.33s 00:00:01.18 Elapsed: 00:00:00.43
# Mc/sec: 2598.04
//
Query:       KOO21866.1  [L=298]
Description: hypothetical protein Ctob_002081 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (298 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       205  (0.011434); expected 358.6 (0.02)
Passed bias filter:                      172  (0.0095934); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.41u 0.24s 00:00:00.64 Elapsed: 00:00:00.40
# Mc/sec: 2257.56
//
Query:       KOO21867.1  [L=720]
Description: glutamine synthetase type iii domain-containing protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    9.7e-48  161.8   0.0    6.4e-47  159.2   0.0    2.2  2  GSIII_N         Glutamine synthetase type III N terminal
    4.3e-32  110.4   0.2    7.8e-32  109.6   0.2    1.4  1  Gln-synt_C-ter  Glutamine synthetase C-terminal domain
      4e-17   62.2   0.0    1.6e-16   60.2   0.0    1.9  2  Gln-synt_C      Glutamine synthetase, catalytic domain


Domain annotation for each model (and alignments):
>> GSIII_N  Glutamine synthetase type III N terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  159.2   0.0   1.1e-50   6.4e-47       3     160 .]      42     204 ..      40     204 .. 0.94
   2 ?   -0.3   0.0      0.12   7.4e+02     104     121 ..     481     498 ..     475     537 .. 0.88

  Alignments for each domain:
  == domain 1  score: 159.2 bits;  conditional E-value: 1.1e-50
     GSIII_N   3 elfgskvfnekvmkkrlpkevykklkkaieegekldeevadvvakamkeWalekgathytHwFqPlt......gltaekhdsflelekdgkvieefsgk 95 
                 + +g++ f  +v+ k+l k+   + +   +++ +ld+e+a +vaka+ eWa e+gat   H FqPl       g ta  ++++++++k+g+    f+g+
  KOO21867.1  42 SSYGQNRFMGTVAAKYLVKQGLPA-NLLSTSDWTLDRETAHKVAKAIIEWAKERGATMTVHCFQPLGsaglrlGQTAGVQNAMFNFNKKGELEYVFTGD 139
                 579**************9976654.3344566789*******************************778999999************************ PP

     GSIII_N  96 elikgEpDaSSfpsGglratfeArgytawdptspafikektlciPtvfvsytGealDkktpllrs 160
                 eli+gE+D+SSf +Gglrat++A gyt++dptsp+fi+ +t++iPt+fvs++G a+D+ktpll+s
  KOO21867.1 140 ELIQGESDGSSFHNGGLRATHTAGGYTILDPTSPVFIRGDTVFIPTMFVSWHGIAIDEKTPLLKS 204
                 ***************************************************************98 PP

  == domain 2  score: -0.3 bits;  conditional E-value: 0.12
     GSIII_N 104 aSSfpsGglratfeArgy 121
                 +S fp Gg r  f A g 
  KOO21867.1 481 TSPFPYGGHRFEFRAAGS 498
                 689*******99999985 PP

>> Gln-synt_C-ter  Glutamine synthetase C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  109.6   0.2   1.3e-35   7.8e-32       3     107 ..     531     635 ..     529     648 .. 0.93

  Alignments for each domain:
  == domain 1  score: 109.6 bits;  conditional E-value: 1.3e-35
  Gln-synt_C-ter   3 kevikktikehkriiFnGdgYseeWeeeaekRgLknlkttvealkalleeknielfeklgvlseeElesryeillekYvkkieiEaktllelvkk 97 
                     ++v  ++++e++++iFnG+gYs+eW  eae+R L  + + vea k+l+++kn +lf+k++v++ +E+e+r +i++++Y+ ++eiEak++++++++
      KOO21867.1 531 ADVAAEMLNESWDVIFNGNGYSKEWPIEAERRRLCRIDSGVEACKKLTDKKNKDLFSKMNVMKPDECEARATIMYNHYAGTVEIEAKCMVDMIQQ 625
                     6788999**************************************************************************************** PP

  Gln-synt_C-ter  98 eilPavlkyq 107
                     +i+P+++k +
      KOO21867.1 626 HIIPSATKVN 635
                     *****98864 PP

>> Gln-synt_C  Glutamine synthetase, catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.2   0.0   2.7e-20   1.6e-16      17     169 ..     223     378 ..     211     389 .. 0.82
   2 ?   -2.0   0.0      0.23   1.4e+03     235     251 ..     487     503 ..     468     515 .. 0.74

  Alignments for each domain:
  == domain 1  score: 60.2 bits;  conditional E-value: 2.7e-20
                 HTTCEEEEEEEEEEEEESEECCCESSEEEEEEE.TB...B.TSS-TTB..HCCCC.CTCCHHHHHHHHHHHTT--EECCEEECCCTEEEEEE--EECHH CS
  Gln-synt_C  17 eeGltvvvgpElEFflfdkeedkeasksllevdseekgrpaekggyfs..vapvd.eaedlrreivealealgieveashhEvatgQvEinlkfadalk 112
                  +++ +++g E EFfl+ +e + +  +  ++ ++  + ++a+ ++ ++  +ap++  a  +++ei++   ++g+++++ h Eva+ Q+E    f  a +
  KOO21867.1 223 VSNIIPNIGLEQEFFLIPREAYYKRPDLQFAGRTIMGRDAARGQELCDhyMAPLNqVALACMQEIMHEGFKMGCPFKTRHREVAPNQYECAPYFGLAST 321
                 4567899*************99773333333333344555555555442244555156699************************************** PP

                 HHHHHHHHHHHHHHHHHHTT-EEE-SSSSSTTS---BEEEEEEEEECTTEESSB-TT CS
  Gln-synt_C 113 aaDnvvtfKrvvkevArkhgltatFmpKplegdnGsgmHvhlSlwdkdgknlfaded 169
                 + D+ +++ +++ e+ +khgl   ++ Kp+++ nGsg H ++Sl + +g nl+ +++
  KOO21867.1 322 QIDENLVLMQLIDEIPQKHGLVGILHEKPFNHVNGSGKHNNFSLGTPEGVNLMNGPQ 378
                 *****************************************************9987 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 0.23
                 GCSTEEEECEBTTS-HH CS
  Gln-synt_C 235 kakrvElRlpdasaNPY 251
                  ++r+E+R++++s N  
  KOO21867.1 487 GGHRFEFRAAGSSQNVS 503
                 579**********9965 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (720 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       597  (0.033298); expected 358.6 (0.02)
Passed bias filter:                      529  (0.0295053); expected 358.6 (0.02)
Passed Vit filter:                        52  (0.00290033); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.58u 0.28s 00:00:00.86 Elapsed: 00:00:00.40
# Mc/sec: 5441.57
//
Query:       KOO21868.1  [L=369]
Description: hypothetical protein Ctob_002083 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.9e-22   79.7  10.7    3.3e-22   79.0  10.7    1.3  1  Mg_trans_NIPA   Magnesium transporter NIPA
     0.0036   17.3   4.2       0.77    9.8   0.5    2.4  2  TMEM234         Putative transmembrane family 234
  ------ inclusion threshold ------
       0.19   11.0   4.1        3.4    6.9   2.0    2.6  2  AgrB            Accessory gene regulator B
        4.6    8.0  15.2       0.13   13.0   1.5    2.9  3  Multi_Drug_Res  Small Multidrug Resistance protein


Domain annotation for each model (and alignments):
>> Mg_trans_NIPA  Magnesium transporter NIPA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   79.0  10.7   7.3e-26   3.3e-22       5     290 ..      28     318 ..      25     322 .. 0.81

  Alignments for each domain:
  == domain 1  score: 79.0 bits;  conditional E-value: 7.3e-26
  Mg_trans_NIPA   5 iGvlLavssslfigssfilkkkgllrlarkgevrageGGyaylkevlWwaGllt.mavGeaanfaayafaPatLvtPLGalsvivsavlas...ll 96 
                    +Gv+L +++++  ++ + l k++    a  +++ +       +k + W  G++  ++   + +++a+a+ P +L++P+ al++++s vla+   + 
     KOO21868.1  28 FGVSLVILGCISSSIGLLLMKRS----ADVEDTLP------LYKRWRWALGFVFlVGNATVIDLIAFAITPLSLIAPFAALTMVFSVVLAKsglFG 113
                    68888888887777777776654....55565555......67889999997751455566799*************************9733244 PP

  Mg_trans_NIPA  97 LkekLkllgllGcllailGstvlvihaPkeeeieslkevadllvdpaflvyvilvvvv.vlvlilyveprkG.......ktnilvyitlcs.llgs 183
                    ++e L   +++G+   ++G t++ ++ P+  +  ++ e++d + +paf+v+v l +++ +l l+l  +pr              ++   cs + g+
     KOO21868.1 114 VHESLPGRQIIGIAFVVVGVTTVSVFGPHTSDEPTMAEIFDDFDNPAFIVFVSLSLSLvALYLVLLWTPRLEpyrpsptSPWTTLFSAFCSaVCGA 209
                    69****************************************************998515889999998864111111123345566666526799 PP

  Mg_trans_NIPA 184 ltvisvkalgiaikltlaGk.aqlkyalawil.llvlvicvvlqinyLnkaldifntsivtPvyyvlfttlvivasailfkefleasvddvlgels 277
                     + + +k +++ ++   +G       + a+il l+ l ++  lq+  Ln  l    +   +P+y  l+  l+++a+ i+fkef++ s++  +   +
     KOO21868.1 210 QSQLFLKVISVGLRFFTTGGdPNAAVTPAFILsLIGLAVTAPLQLYLLNSTLASSPIGYAVPLYQSLLIMLTVAAGGIFFKEFADISFARGVLFCV 305
                    9*************9887651555555566662555677788************************************************999999 PP

  Mg_trans_NIPA 278 Gfllvllgvfllh 290
                    G ++ l g+++l 
     KOO21868.1 306 GAMVALGGLVVLS 318
                    ***9999988875 PP

>> TMEM234  Putative transmembrane family 234
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.8   0.5   0.00017      0.77      37     114 ..      55     135 ..      40     137 .. 0.77
   2 !    8.6   0.2   0.00041       1.8      62     112 ..     258     308 ..     234     312 .. 0.88

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.00017
     TMEM234  37 elkflllrlkylipll.lNqsgSvlfflllgkadlslavpiaNslafvfTvlte...lllgekvlkkktvlgmllvvvgial 114
                 ++  l+ r+++++ ++ l   + v+  ++ + ++lsl+ p a +l++vf v+ +   l+   + l  ++++g+++vvvg++ 
  KOO21868.1  55 DTLPLYKRWRWALGFVfLVGNATVIDLIAFAITPLSLIAPFA-ALTMVFSVVLAksgLFGVHESLPGRQIIGIAFVVVGVTT 135
                 44558899999999872445688999999***********98.899999988763322334667778899*********985 PP

  == domain 2  score: 8.6 bits;  conditional E-value: 0.00041
     TMEM234  62 flllgkadlslavpiaNslafvfTvltelllgekvlkkktvlgmllvvvgi 112
                 + +l++ ++  avp+  sl +++Tv  + +  +++   +   g+l+ v ++
  KOO21868.1 258 NSTLASSPIGYAVPLYQSLLIMLTVAAGGIFFKEFADISFARGVLFCVGAM 308
                 6799********************************999999999987654 PP

>> AgrB  Accessory gene regulator B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.9   2.0   0.00075       3.4      32     132 ..      76     190 ..      66     222 .. 0.88
   2 ?    3.2   0.0     0.011        49      80     132 ..     277     332 ..     274     335 .. 0.85

  Alignments for each domain:
  == domain 1  score: 6.9 bits;  conditional E-value: 0.00075
        AgrB  32 stlikiililliglllgilketlifllvflllRifaGGyHaktylrClilslliflllillakllslsls..............lllillliilliisl 116
                  t+i +i + ++ l l   + +l ++++ +l ++  +G+H + + r +i   ++++++  ++ + +   +               +++++ + l +++l
  KOO21868.1  76 ATVIDLIAFAITPLSLIAPFAALTMVFSVVLAKSGLFGVHESLPGRQIIGIAFVVVGVTTVSVFGPHTSDeptmaeifddfdnpAFIVFVSLSLSLVAL 174
                 6789999999999999999999************************999999999998888888777777999*********998899999999999** PP

        AgrB 117 iiilllaPvdtpnkpi 132
                 +++ll+ P   p +p 
  KOO21868.1 175 YLVLLWTPRLEPYRPS 190
                 ********99999886 PP

  == domain 2  score: 3.2 bits;  conditional E-value: 0.011
        AgrB  80 ilslliflllillakllslsls...lllillliilliisliiilllaPvdtpnkpi 132
                 +++l++  + i++ ++ ++s+    l+++ ++++l  + ++++ + +P+ t++k +
  KOO21868.1 277 LIMLTVAAGGIFFKEFADISFArgvLFCVGAMVALGGLVVLSLKVQSPAPTEEKVL 332
                 77888889999999999999999987777888888889999999*******99976 PP

>> Multi_Drug_Res  Small Multidrug Resistance protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.5   2.0     0.026   1.1e+02       5      92 ..      32     128 ..      28     129 .. 0.70
   2 ?   -3.5   0.1       3.8   1.7e+04      35      47 ..     161     173 ..     157     177 .. 0.67
   3 ?   13.0   1.5   2.8e-05      0.13      20      84 ..     215     295 ..     193     303 .. 0.66

  Alignments for each domain:
  == domain 1  score: 3.5 bits;  conditional E-value: 0.026
                     HHHHHHHHHHHHHHH---.......-----------HHHHHHHHHHH..HHHHHH-------HHHHHHHHHHHHHHHHHHHHH--------HHHH CS
  Multi_Drug_Res   5 llvlAillevvgailLkl.......segftkltpsllvivgygisfl..lLskalkslpvsvAYavwsGiGtvlivlvgillfgeslslkkligl 90 
                     l++l  +++ +g +l+k            +++ + l++++ +g + +  l+++a+  l +   +a ++ +  v+++  g+   +esl   ++ig+
      KOO21868.1  32 LVILGCISSSIGLLLMKRsadvedtLPLYKRWRWALGFVFLVGNATVidLIAFAITPLSLIAPFAALTMVFSVVLAKSGLFGVHESLPGRQIIGI 126
                     56677788899999999944443332234566677777776555544227888888888888899998888888888888888889988999998 PP

                     HH CS
  Multi_Drug_Res  91 al 92 
                     a 
      KOO21868.1 127 AF 128
                     86 PP

  == domain 2  score: -3.5 bits;  conditional E-value: 3.8
                     HHHHHHHHHHHHH CS
  Multi_Drug_Res  35 vivgygisfllLs 47 
                     +iv++++s++l +
      KOO21868.1 161 FIVFVSLSLSLVA 173
                     6777777777665 PP

  == domain 3  score: 13.0 bits;  conditional E-value: 2.8e-05
                     ---.........-----------HHHH.......HHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH------ CS
  Multi_Drug_Res  20 Lkl.........segftkltpsllviv.......gygisfllLskalkslpvsvAYavwsGiGtvlivlvgillfgeslsl 84 
                     Lk+         + g+ ++ +++ +i+          + ++lL  +l s p++ A ++++ + ++l+v++g ++f+e +++
      KOO21868.1 215 LKVisvglrfftTGGDPNAAVTPAFILsliglavTAPLQLYLLNSTLASSPIGYAVPLYQSLLIMLTVAAGGIFFKEFADI 295
                     5555555555653333344444333333222222556789************************************97765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (369 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       532  (0.0296726); expected 358.6 (0.02)
Passed bias filter:                      249  (0.0138881); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.47u 0.28s 00:00:00.75 Elapsed: 00:00:00.43
# Mc/sec: 2594.92
//
Query:       KOO21869.1  [L=361]
Description: CMGC/GSK protein kinase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.5e-62  211.4   0.0    1.7e-62  211.2   0.0    1.0  1  Pkinase      Protein kinase domain
    5.5e-26   91.4   0.0    1.1e-25   90.4   0.0    1.5  2  Pkinase_Tyr  Protein tyrosine kinase
     0.0018   17.7   0.4      0.003   16.9   0.4    1.3  1  Kdo          Lipopolysaccharide kinase (Kdo/WaaP) family
      0.002   18.1   0.6     0.0052   16.7   0.1    1.9  2  APH          Phosphotransferase enzyme family


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  211.2   0.0   3.8e-66   1.7e-62       1     264 []      26     310 ..      26     310 .. 0.89

  Alignments for each domain:
  == domain 1  score: 211.2 bits;  conditional E-value: 3.8e-66
                 EEEEEEEEEESSEEEEEEEETTTTEEEEEEEEECHCHCHHHHHHHHHHHHHHHHHSCTTB--EEEEEEE......SSEEEEEEE--TTEB...HHHHHH CS
     Pkinase   1 yekleklGeGsfGkVykaveketgkivAvKkikkekakkkkekkvlrEikilkklkhpnivrlyevfee......kdelylvleyvegge...ladlle 90 
                 y+ ++ +G+G+fG V +a+ +e+g+ivA+Kk+  +++ +       rE++++k ++h+n+vrl ++fe+      ++ l+lv++y++++        l+
  KOO21869.1  26 YQLEKVVGHGAFGIVWRAR-TEDGEIVAIKKVLLDRRYH------NRELQMMKVMEHDNVVRLRHSFEKngrkkdETFLHLVMDYLPETIrsiA---LK 114
                 788999*************.7*************98887......469*********************9**98888899*******8753432...33 PP

                 ...HHSS--HHHHHHHHHHHHHHHHHHHHTTEE-SS-SGGGEEEE.TTTEEEE-SGTTSEESSSSCSBCTTTSCGGGS-HHHH.TTSCBSHHHHHHHHH CS
     Pkinase  91 ...rkgslseeeakkiakqilegleylHskgiiHrDlKpeNiLid.ekgelKitDFGlakelessskltsfvgtseYlAPEvl.keneyskkvDvWslG 184
                    r + + ++++k +++q++ +ley+H+++i+HrD+Kp+N+L+d  + + +++DFG +k l ++++  s++++++Y+APE++ +++eys +vDvWs+G
  KOO21869.1 115 yhkRAKRFHPDHIKAYLWQTFGALEYIHARRICHRDIKPDNLLCDpASLKCRLCDFGCSKVLVKGQPNVSYICSRYYRAPELMfGATEYSVSVDVWSVG 213
                 4447788**************************************88888*********************************9*************** PP

                 HHHHHHHHSS-STTTSSHHHHHHHHHHTHHHHHHHCT.SHH...HHHTTS......................-HHHHHHHHHHT-SSGCCSTTHHHHHT CS
     Pkinase 185 vilyelltgkppfsgekgkekvekeldqlekilkilg.etkeklpeasei......................seeakdllkkllkkdpkkRltaeellq 260
                  il+ell g+ p++g+++++++      l++i+k+lg +t+ +l+  +                        +e a+dl ++ll++dp+kRlta+++l+
  KOO21869.1 214 TILMELLLGHLPYQGQDSTQQH------LVEIMKLLGtPTDHDLQAMRATccaddlpklkaypwermfpaqtPEAAIDLAQRLLNYDPEKRLTASMALR 306
                 **************66666633......334666777544455554444467888899999999999******************************** PP

                 SGGG CS
     Pkinase 261 hpyl 264
                 h ++
  KOO21869.1 307 HAFF 310
                 *998 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   90.4   0.0   2.5e-29   1.1e-25       2     213 ..      27     233 ..      26     265 .. 0.81
   2 ?   -2.5   0.0      0.55   2.5e+03     226     252 ..     275     301 ..     269     306 .. 0.85

  Alignments for each domain:
  == domain 1  score: 90.4 bits;  conditional E-value: 2.5e-29
                  EEEEEEEEESSEEEEEEEEETTTTSSEEEEEEEEESTTSSHHHHHHHHHHHHHHHTS-BTTB--EEEEEESSSS......EEEEEE--TTEBHHHHHH CS
  Pkinase_Tyr   2 elgkklGeGafGkVvegtlkgekekkevkVavKtlkeeateeekeelleeakimkklkhpnivkllgvctkeep......llivteyvkgGdLlkfLr 93 
                  +l+k +G+GafG V++++ +     + + Va+K++  + + +      +e+++mk ++h+n+v+l     k+++      l +v++y+++   +  L+
   KOO21869.1  27 QLEKVVGHGAFGIVWRARTE-----DGEIVAIKKVLLDRRYH-----NRELQMMKVMEHDNVVRLRHSFEKNGRkkdetfLHLVMDYLPETIRSIALK 114
                  68899*************99.....8899****995444444.....68*****************9999444445667899*******995555555 PP

                  HT.CTTTSBHHHHHHHHHHHHHHHHHHHHTTEEEST-SGGGEEEEE.TTEEEE-STTTHEETTTSSEEEETTSSTSGGGGS-HHHHHHSE.EEHHHHH CS
  Pkinase_Tyr  94 kk.ekekltlkdllsfalqvAkGmeyLeskklvHrdlaarNvLlse.nkvvkisDfGLardiekddeyvkkeeaklpvkWmapEslkekk.ftsksDv 188
                   + + ++++ +++  + +q   ++ey++++++ Hrd+   N L +  + +++++DfG ++ +    + + + +  ++  + apE ++  + ++++ Dv
   KOO21869.1 115 YHkRAKRFHPDHIKAYLWQTFGALEYIHARRICHRDIKPDNLLCDPaSLKCRLCDFGCSKVL---VKGQPNVSYICSRYYRAPELMFGATeYSVSVDV 209
                  541267889999999*****************************972569**********99...3334455666777788***9997655******* PP

                  HHHHHHHHHHHTTSSGTTTTSHHHH CS
  Pkinase_Tyr 189 WsfGvllwEiftlgespypglknee 213
                  Ws G++l+E++  g+ py+g ++++
   KOO21869.1 210 WSVGTILMELLL-GHLPYQGQDSTQ 233
                  **********98.******995544 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 0.55
                  BBTTSBHHHHHHHHHHT-SSGGGS--H CS
  Pkinase_Tyr 226 kpekcpeelyelmkkcweedpeeRptf 252
                   p+++pe+  +l ++ +++dpe+R t 
   KOO21869.1 275 FPAQTPEAAIDLAQRLLNYDPEKRLTA 301
                  58889999999999999******9875 PP

>> Kdo  Lipopolysaccharide kinase (Kdo/WaaP) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   0.4   6.8e-07     0.003      59     167 ..      64     171 ..      53     179 .. 0.86

  Alignments for each domain:
  == domain 1  score: 16.9 bits;  conditional E-value: 6.8e-07
         Kdo  59 vrEfrllkrLeeagvavpkpvaagavkvgleyrAlllterl.egaqdLedllakwae..laeelkrallkavgrliaklhragvnHadlyaknillqqe 154
                  rE++++k +e+  v  ++  + +  +++ e    l++  l e +++++  + k a+   +++ k+ l++  g+l + +h++ ++H+d+ + n+l + +
  KOO21869.1  64 NRELQMMKVMEHDNVVRLRHSFEKNGRKKDETFLHLVMDYLpETIRSIALKYHKRAKrfHPDHIKAYLWQTFGAL-EYIHARRICHRDIKPDNLLCDPA 161
                 58888888888888888888888888888888888999999556789**999998889999999999****9986.99********************9 PP

         Kdo 155 eeeeaeiwliDld 167
                     +++ l D+ 
  KOO21869.1 162 S---LKCRLCDFG 171
                 8...999999995 PP

>> APH  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.1   1.2e-06    0.0052     152     195 ..     131     172 ..      72     175 .. 0.70
   2 ?   -1.3   0.0      0.36   1.6e+03      84     102 ..     272     290 ..     215     315 .. 0.67

  Alignments for each domain:
  == domain 1  score: 16.7 bits;  conditional E-value: 1.2e-06
                 HHHHHHHH--SSS-EEEE-SS-SGGGEEEC..TTEEEEE---TT CS
         APH 152 vlaalaallpgelptvllHgDlhpgNllvdpddgrvtGviDfed 195
                 +++++ al     +++++H+D++p+Nll dp+  ++  + Df++
  KOO21869.1 131 LWQTFGALEYI-HARRICHRDIKPDNLLCDPASLKC-RLCDFGC 172
                 66676666665.89****************554433.3456665 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 0.36
                 SHHHHHHHHHHHHHHHHHH CS
         APH  84 rklsaaqlpellealgefl 102
                 +++ +aq+pe++ +l++ l
  KOO21869.1 272 ERMFPAQTPEAAIDLAQRL 290
                 2466666666666666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (361 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       485  (0.0270511); expected 358.6 (0.02)
Passed bias filter:                      431  (0.0240393); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.53u 0.23s 00:00:00.76 Elapsed: 00:00:00.42
# Mc/sec: 2587.51
//
Query:       KOO21870.1  [L=59]
Description: hypothetical protein Ctob_002085 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.8e-10   40.8   0.0      2e-10   40.7   0.0    1.1  1  MWFE      NADH-ubiquinone oxidoreductase MWFE subunit


Domain annotation for each model (and alignments):
>> MWFE  NADH-ubiquinone oxidoreductase MWFE subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.7   0.0   1.1e-14     2e-10       1      51 [.       2      51 ..       2      54 .. 0.93

  Alignments for each domain:
  == domain 1  score: 40.7 bits;  conditional E-value: 1.1e-14
        MWFE  1 PfEaLlpygImiamfgitgaglskirklqnggkraRhsvdqWdrqvmdRDr 51
                P   Llp+gI+++++g+ g++ls+i +++  g r+R+  d+W ++++dRD 
  KOO21870.1  2 PLASLLPLGIIMGAIGVCGTLLSVIPYATR-GERKRVIKDRWVEAMYDRDA 51
                5668**********************9999.9******************6 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (59 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       373  (0.0208043); expected 358.6 (0.02)
Passed bias filter:                      326  (0.0181828); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.35u 0.26s 00:00:00.61 Elapsed: 00:00:00.41
# Mc/sec: 434.25
//
Query:       KOO21871.1  [L=384]
Description: dual specificity protein phosphatase 10-like protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.5e-28   99.2   0.0      2e-28   98.8   0.0    1.2  1  DSPc           Dual specificity phosphatase, catalytic domain
     0.0012   18.5   0.1     0.0024   17.5   0.1    1.4  1  Y_phosphatase  Protein-tyrosine phosphatase


Domain annotation for each model (and alignments):
>> DSPc  Dual specificity phosphatase, catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   98.8   0.0   2.3e-32     2e-28       1     132 [.     143     278 ..     143     279 .. 0.95

  Alignments for each domain:
  == domain 1  score: 98.8 bits;  conditional E-value: 2.3e-32
                 EEEEECCHHC..HHHHHHHTCSEEEEESSSSSEC..ECCTTTTSEEEEECCESSTTSCCGGGHHHHHHHHHHHHHTT-EEEEEESSSSSHHHHHHHHHH CS
        DSPc   1 lylgskstas..lallsklgitlvinvtkevpna..nalkkseieklripvedehetkiskyleeavefidkakqkgkkvlVHCqaGisRSatliiaYl 95 
                 lylg  ++a   + l ++l+i++ + +  e p +     ++s+ +++++ v+d +e++i +++  a ++i++a+  +  v+VHC  G+sRSa+l+iaYl
  KOO21871.1 143 LYLGDLTDAAalPRLREQLNIQHALTALAELPSSlkASVSESGVRHTWCDVRDVEEADIKAHFGTAFDIIEAARAAQTAVFVHCSRGVSRSASLCIAYL 241
                 68888888777788999**************98888777999********************************************************* PP

                 HHHHTSCHHHHHHHHHHHSTT-SSTHHHHHHHHHHHH CS
        DSPc  96 mktknlslneayeflkerrpaispnagfirqLleyek 132
                 m+++++s++ a e++   rp i pn+gf+r Lle++k
  KOO21871.1 242 MRQEGWSAQRAREHVAAARPIIQPNEGFWRCLLEFQK 278
                 ***********************************97 PP

>> Y_phosphatase  Protein-tyrosine phosphatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5   0.1   2.6e-07    0.0024     148     194 ..     201     243 ..     178     252 .. 0.82

  Alignments for each domain:
  == domain 1  score: 17.5 bits;  conditional E-value: 2.6e-07
                    SGSCCHHHHHHHHHHHHHHSTTSS-EEEECSSSSHHHHHHHHHHHHH CS
  Y_phosphatase 148 vpesaksllklirkvekskeaksgpvvVhCsaGvgRtgtfvaldill 194
                    ++++   ++++i+ ++  +    + v VhCs Gv+R+++++ + ++ 
     KOO21871.1 201 IKAHFGTAFDIIEAARAAQ----TAVFVHCSRGVSRSASLCIAYLMR 243
                    5566667778888888888....9****************9987765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (384 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       458  (0.0255452); expected 358.6 (0.02)
Passed bias filter:                      382  (0.0213063); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.47u 0.25s 00:00:00.72 Elapsed: 00:00:00.41
# Mc/sec: 2781.36
//
Query:       KOO21872.1  [L=353]
Description: g-protein complex alpha subunit [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.7e-95  319.5   0.5    4.1e-95  319.0   0.5    1.2  1  G-alpha    G-protein alpha subunit
    1.3e-14   54.0   3.0    1.1e-11   44.5   0.2    3.1  3  Arf        ADP-ribosylation factor family
    9.9e-05   21.8   2.1     0.0051   16.2   0.3    2.4  2  Gtr1_RagA  Gtr1/RagA G protein conserved region
  ------ inclusion threshold ------
      0.014   15.6   0.3        6.3    7.0   0.0    2.6  2  Roc        Ras of Complex, Roc, domain of DAPkinase
        0.1   11.7   0.1       0.19   10.8   0.1    1.3  1  DAP3       Mitochondrial ribosomal death-associated protein 3
       0.17   11.7   0.0       0.54   10.0   0.0    1.8  1  AAA_29     P-loop containing region of AAA domain


Domain annotation for each model (and alignments):
>> G-alpha  G-protein alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  319.0   0.5   1.4e-98   4.1e-95      10     353 ..      26     340 ..      17     341 .. 0.91

  Alignments for each domain:
  == domain 1  score: 319.0 bits;  conditional E-value: 1.4e-98
                 XXXXXXXXXXE..EEEEEEEESTTSSHHHHHHHHHHHCS----HHHHHCCHHHHHHHHHHHHHHHHHHHHHTT.......HHHC-SS-SCCCS-HCHHH CS
     G-alpha  10 slkaerkarkkkrevkllllGqseSGKsTilkqlkllykkgfseeelatwraviqlnivrsiktilealesleselsesfelqelkerldplkkveasl 108
                 +++++ ++ ++  + kllllG++eSGKsT++kq++++   g+s  el+++r +i+ n+++ ++t++ea ++ e el       e +e++++ +      
  KOO21872.1  26 KIREDCEKAHN--KKKLLLLGAGESGKSTVFKQMRIINASGYSSGELRQFRWIIHRNMIDGMRTLVEAAQERELEL------TESNEDVADAM---LL- 112
                 55666333333..45********************************************************55544......34444444433...32. PP

                 H..........HHCCHHC-HCHHHHHHHHCCSHHHHHHHCCGCCTT--TTHHHHHCTHHHHCSTT----CHHHHCS-----SEEEEEEECT-TEEEEEE CS
     G-alpha 109 iaklssateeeqeiefnpraevgedikaLwndpgiqelyerrnkiklednaeyFlddleritspdYlptddDilkarlktvGisetkfevdsklefriv 207
                 +          q +++np  e+ge++ +Lw dp+iq+ ++rr +++l d+++yF+++l r+++ +Ylpt +Dil+ar++t+G+   +f ++ +  f+++
  KOO21872.1 113 Y----------QGENVNP--EMGESFASLWADPAIQQSFARRAEFQLGDGVQYFFNNLPRVAAIEYLPTVEDILHARVRTSGVVSRDFVIN-NQAFQMY 198
                 2..........6789***..**********************************************************************9.******* PP

                 EE-SSHHHHHGTCCCTTTECEEEEEEEGGGTT-B-SS-TTSBHHHHHHHHHHCCCC-GGGTTSEEEEEEE-HHHHHHHCCCS-GGGCCTT--H.CCHHH CS
     G-alpha 208 dvgGqrserkkWvpffddvdaiiFlvslsefdqvlyedekvnrleeslklFkeicnnkllkntpiiLflnKlDileeKlkkgklskyfpsyegrkndle 306
                 dvgGqrser++W+p+fd+v+ai+F++++se++qv +ed+++nr++e+l+lF++i n+k ++ ++iiLflnK+D++e+K+++++  ++fp+y+g + d+ 
  KOO21872.1 199 DVGGQRSERRNWLPLFDNVTAIVFVAAISEYNQVVAEDRSKNRMQEALELFEQIANSKHFEGIDIILFLNKKDLFEQKIRTVDPVTWFPDYKG-GCDFI 296
                 **********************************************************************************66677*****9.99999 PP

                 HHHHHHHHHHHCCCCCCESGGSCEEEEEE-TT-HHHHHHHHHHHHHH CS
     G-alpha 307 svlkylrnkFeeihkeksnnrrkiythftsatdtkevqkviesvrdt 353
                 ++  y++ +Fe+ ++   ++++ +yt+ t+atdt ++q v+ +v+ +
  KOO21872.1 297 KAEAYFKAQFEKRIN---DKKKMLYTYTTCATDTSSMQVVFTAVESM 340
                 999**********98...77889*********************987 PP

>> Arf  ADP-ribosylation factor family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.8   0.1   0.00068         2       6      35 ..      29      58 ..      24      66 .. 0.82
   2 ?   -0.1   0.0      0.18   5.3e+02     111     144 ..      68     101 ..      62     119 .. 0.83
   3 !   44.5   0.2   3.6e-15   1.1e-11      43     129 ..     178     274 ..     169     280 .. 0.82

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 0.00068
                HGGTT.TTEEEEEEEESTTSSHHHHHHHHH CS
         Arf  6 aklklkkkelrilllGLDnaGKtTilkklk 35
                +  ++++++ ++lllG  ++GK+T+ k+++
  KOO21872.1 29 EDCEKAHNKKKLLLLGAGESGKSTVFKQMR 58
                5556667889***************99876 PP

  == domain 2  score: -0.1 bits;  conditional E-value: 0.18
                 GCCTTSEEEEEEE-TTSTTSS-HHHHHHHTTGGG CS
         Arf 111 eelkevallvlaNKqDlpealseeelrellglee 144
                  el++  +++  N +D   +l e+  +++l+l+e
  KOO21872.1  68 GELRQFRWIIHRNMIDGMRTLVEAAQERELELTE 101
                 5889999999999999999999999999998877 PP

  == domain 3  score: 44.5 bits;  conditional E-value: 3.6e-15
                 SSSSSEEEEEEEETTEEEEEEEE-SSGGGGGGGGGGCTTESEEEEE........EETT-..CTTHHHHHHHHHHHCTSGCCTTSEEEEEEE-TTSTT CS
         Arf  43 vPTigfnveeleiknlkftvwDvGGqeklRplWknYfektdavifv........vDsad..reRleeakeeLkalleeeelkevallvlaNKqDlpe 129
                 v T g  +++  i+n  f+++DvGGq++ R+ W   f++++a++fv        v + d  ++R++ea e ++++ ++++ + + ++++ NK+Dl e
  KOO21872.1 178 VRTSGVVSRDFVINNQAFQMYDVGGQRSERRNWLPLFDNVTAIVFVaaiseynqVVAEDrsKNRMQEALELFEQIANSKHFEGIDIILFLNKKDLFE 274
                 668899999999*********************************933222222222332256*******************************976 PP

>> Gtr1_RagA  Gtr1/RagA G protein conserved region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.8   0.1    0.0053        16       1      16 [.      39      54 ..      39      74 .. 0.87
   2 !   16.2   0.3   1.7e-06    0.0051      44     129 ..     189     278 ..     169     281 .. 0.74

  Alignments for each domain:
  == domain 1  score: 4.8 bits;  conditional E-value: 0.0053
   Gtr1_RagA  1 kvLLmGksgsGKtsmr 16
                k+LL+G ++sGK+++ 
  KOO21872.1 39 KLLLLGAGESGKSTVF 54
                89***********974 PP

  == domain 2  score: 16.2 bits;  conditional E-value: 1.7e-06
   Gtr1_RagA  44 flgnltlnlwDcgGqeafveeylssqkeeifrnvgvliyVfDve..........sre.leedletlkeilealrqyspeakvfvlihKmDliqeder 129
                 + +n  +++ D+gGq++   +        +f nv ++++V  ++          s++ ++e+le +++i +  +++ + + +  +++K Dl +++ r
  KOO21872.1 189 VINNQAFQMYDVGGQRSERRNW-----LPLFDNVTAIVFVAAISeynqvvaedrSKNrMQEALELFEQIAN--SKHFEGIDIILFLNKKDLFEQKIR 278
                 578889*********9988886.....579*************9888887654422224444444444433..355679999*********999877 PP

>> Roc  Ras of Complex, Roc, domain of DAPkinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.9   0.1    0.0046        14       1      19 [.      39      57 ..      39      67 .. 0.90
   2 ?    7.0   0.0    0.0021       6.3      49     119 ..     186     271 ..     165     272 .. 0.59

  Alignments for each domain:
  == domain 1  score: 5.9 bits;  conditional E-value: 0.0046
                EEEEESSTTSSHHHHHHCH CS
         Roc  1 KvvlvGdsgvGKtsllkrf 19
                K++l+G +++GK++ +k++
  KOO21872.1 39 KLLLLGAGESGKSTVFKQM 57
                89************99976 PP

  == domain 2  score: 7.0 bits;  conditional E-value: 0.0021
                 TBTTTTCEEEEEEEE-SGGCTTT.T-HHHHCTSCEEEEEEE.........GHHHHCHHHHHHHHHHHCSSS.....-EEEEEE-TT CS
         Roc  49 ndkkvkkvklniWDtaGqerfrs.lhplylreaalailvyd.........srssenlkeWlkelkkvagks.....pvilvgnkiD 119
                  d  +++  ++++D++Gq   r    pl+ +  a++++            +rs+++++e l+ +++ a+++      +il  nk D
  KOO21872.1 186 RDFVINNQAFQMYDVGGQRSERRnWLPLFDNVTAIVFVAAIseynqvvaeDRSKNRMQEALELFEQIANSKhfegiDIILFLNKKD 271
                 444556678*********87765277777666665554321233344443445556676666666665543222225788888887 PP

>> DAP3  Mitochondrial ribosomal death-associated protein 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.1   6.5e-05      0.19       7      43 ..      21      57 ..      15      64 .. 0.89

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 6.5e-05
                HHHHHHHHTTS.-SSS---EEEEE-SSSSSTTTTHHHH CS
        DAP3  7 tlelikklkka.dkkkkvkrlvltGekgsGKSvlLlqa 43
                t  ++kk+ ++ +k++++k+l+l G   sGKS++  q+
  KOO21872.1 21 T-HCLKKIREDcEKAHNKKKLLLLGAGESGKSTVFKQM 57
                4.7899*****9*********************99886 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   0.0   0.00018      0.54      22      39 ..      37      54 ..      24      61 .. 0.82

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.00018
      AAA_29 22 kgatlltGpsGsGKSTll 39
                k   ll G+ +sGKST++
  KOO21872.1 37 KKKLLLLGAGESGKSTVF 54
                3469************86 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (353 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       668  (0.0372581); expected 358.6 (0.02)
Passed bias filter:                      484  (0.0269954); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.49u 0.26s 00:00:00.75 Elapsed: 00:00:00.40
# Mc/sec: 2620.47
//
Query:       KOO21873.1  [L=219]
Description: hypothetical protein Ctob_002088 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    9.1e-05   21.9   0.0    0.00012   21.4   0.0    1.1  1  Glyco_transf_64  Glycosyl transferase family 64 domain


Domain annotation for each model (and alignments):
>> Glyco_transf_64  Glycosyl transferase family 64 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.4   0.0   6.8e-09   0.00012      66     214 ..      12     163 ..      11     189 .. 0.75

  Alignments for each domain:
  == domain 1  score: 21.4 bits;  conditional E-value: 6.8e-09
  Glyco_transf_64  66 nRflpykeieTdavlslDddillstdeldfAFsvwrefpdrivGfvarshvwdeskgewsYts.....ewtneysmvLtgaaflhrkylelytk 154
                      +Rfl   + +  + + lDdd l  ++++    +   + p  i G   r +   ++ + ++ ++     ++++ +++ Lt +a   r y++ + +
       KOO21873.1  12 ARFLAARSARGTTLVHLDDDELPCERQVCGVAAAAAKEPIGIYGHHKRNC---NPLKGYQTSGdprrlRSNKPFNVLLTLFAATSRAYNDIFVR 102
                      59999999999999999999999888888777788889999999999998...56677777778899999************************ PP

  Glyco_transf_64 155 slpaelrklvdeernCeDIlmnflvaeetrkpp..vkvtslkqfkeeense...kvglsskkeHl 214
                      +    +++l   + n+eDI+ +    ++++k p  v+     ++  +++     +    +  +H+
       KOO21873.1 103 HFDRYAKALASVKGNGEDIAYSHFLLKHFNKTPsyVERAPCYTYAVNNTVVetyA----KGFSHM 163
                      *********************9888888888885744444444443322222221....222233 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (219 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       304  (0.0169558); expected 358.6 (0.02)
Passed bias filter:                      262  (0.0146132); expected 358.6 (0.02)
Passed Vit filter:                        11  (0.000613531); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.21s 00:00:00.61 Elapsed: 00:00:00.39
# Mc/sec: 1692.38
//
Query:       KOO21874.1  [L=548]
Description: RNA recognition motif-containing protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.8e-20   72.5   0.1    3.2e-11   42.9   0.0    2.9  2  RRM_1     RNA recognition motif. (a.k.a. RRM, RBD, or RNP dom
    1.9e-08   34.3   0.0     0.0022   18.1   0.0    2.5  2  RRM_7     RNA recognition motif


Domain annotation for each model (and alignments):
>> RRM_1  RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.1   0.0   6.3e-10   5.6e-06       1      32 [.      59      90 ..      59     129 .. 0.81
   2 !   42.9   0.0   3.6e-15   3.2e-11       1      49 [.     189     238 ..     189     250 .. 0.96

  Alignments for each domain:
  == domain 1  score: 26.1 bits;  conditional E-value: 6.3e-10
                EEEESETTTSSHHHHHHHHHTTSCEEEEEEEE CS
       RRM_1  1 lfVgnLppdvteeeLkelFskfGpiksiklvr 32
                lf+g+L++++te  L+++F+++G+++++++ +
  KOO21874.1 59 LFIGDLHRSTTEASLRKYFEQYGSVERATVKH 90
                8**************************99986 PP

  == domain 2  score: 42.9 bits;  conditional E-value: 3.6e-15
                 EEEESETTTSSHHHHHHHHHTTSCEEEEEEEEE.TTTSEEEEEEEEESSH CS
       RRM_1   1 lfVgnLppdvteeeLkelFskfGpiksiklvrd.etgkskgfafVeFesk 49 
                 +fVg+L++ ++++ L  +Fs+fG + ++ ++++ + ++++gf+fV+Fe++
  KOO21874.1 189 IFVGGLSHQMKDQSLMSYFSQFGTVADVVVMTEgSSRRPRGFGFVTFEDP 238
                 8***********************************************97 PP

>> RRM_7  RNA recognition motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.6   0.0     6e-06     0.054       3      61 ..      58     120 ..      56     132 .. 0.80
   2 !   18.1   0.0   2.4e-07    0.0022       2      64 ..     187     242 ..     186     252 .. 0.76

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 6e-06
       RRM_7   3 kvFvGGlPiDiteeelkatfkefgkv...lvdwPkkaeskkkaaenskaakgyvfl.vfedek 61 
                 ++F+G l    te++l + f+++g+v   +v +P+    ++++++n++a++++ f+ vf+de 
  KOO21874.1  58 RLFIGDLHRSTTEASLRKYFEQYGSVeraTVKHPNARPWQRHEPQNHTAQRSFGFItVFSDEL 120
                 68**********************87444799**99666666677788888999984676664 PP

  == domain 2  score: 18.1 bits;  conditional E-value: 2.4e-07
       RRM_7   2 rkvFvGGlPiDiteeelkatfkefgkvlvdwPkkaeskkkaaenskaakgyvflvfedeksvk 64 
                 rk+FvGGl   +++++l++ f++fg+v+ d    +e ++++       +g+ f+ fed k v 
  KOO21874.1 187 RKIFVGGLSHQMKDQSLMSYFSQFGTVA-DVVVMTEGSSRR------PRGFGFVTFEDPKVVM 242
                 9************************985.444444443333......3577788887777665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (548 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       317  (0.0176809); expected 358.6 (0.02)
Passed bias filter:                      204  (0.0113782); expected 358.6 (0.02)
Passed Vit filter:                         9  (0.00050198); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.48u 0.27s 00:00:00.75 Elapsed: 00:00:00.42
# Mc/sec: 3903.43
//
Query:       KOO21875.1  [L=858]
Description: hypothetical protein Ctob_005456 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.8e-07   29.9   3.2       0.22   11.6   0.2    4.4  3  Arm       Armadillo/beta-catenin-like repeat
  ------ inclusion threshold ------
      0.021   14.9   0.2        1.5    8.9   0.0    3.0  3  Cnd1      non-SMC mitotic condensation complex subunit 1


Domain annotation for each model (and alignments):
>> Arm  Armadillo/beta-catenin-like repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.6   0.2   2.4e-05      0.22       9      41 .]      80     112 ..      77     112 .. 0.90
   2 !    7.6   0.1   0.00044       3.9      12      34 ..     133     155 ..     131     161 .. 0.88
   3 !    8.1   0.0   0.00031       2.8       6      41 .]     168     203 ..     167     203 .. 0.94

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 2.4e-05
                 HHTTHHHHHHHHTTTSSHHHHHHHHHHHHHHTT CS
         Arm   9 ieaGavppLvrLLssedeevqeeAawALsNLaa 41 
                 +e G + +L  L ++++ ev++ A+ +L+NL++
  KOO21875.1  80 REEGSLARLALLVQDDSNEVLTRALYCLGNLCS 112
                 67788889999999******************7 PP

  == domain 2  score: 7.6 bits;  conditional E-value: 0.00044
                 THHHHHHHHTTTSSHHHHHHHHH CS
         Arm  12 GavppLvrLLssedeevqeeAaw 34 
                 G+  +L+r+L s+d ev++ Aa+
  KOO21875.1 133 GISGALLRCLASPDLEVVTYAAG 155
                 66679****************97 PP

  == domain 3  score: 8.1 bits;  conditional E-value: 0.00031
                 HHHHHTTHHHHHHHHTTTSSHHHHHHHHHHHHHHTT CS
         Arm   6 davieaGavppLvrLLssedeevqeeAawALsNLaa 41 
                 +++ e+G+ +++ ++  ++d  + + Aa++L N++a
  KOO21875.1 168 QLLLEQGGADRFEAMVAHDDSLIARYAASTLVNMSA 203
                 78999****************************986 PP

>> Cnd1  non-SMC mitotic condensation complex subunit 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.9   0.0   0.00017       1.5      26      89 ..      39     114 ..      33     128 .. 0.72
   2 ?    2.1   0.0     0.019   1.7e+02      25      89 ..     137     205 ..     133     228 .. 0.81
   3 ?   -1.7   0.1       0.3   2.7e+03      56     114 ..     600     661 ..     584     665 .. 0.68

  Alignments for each domain:
  == domain 1  score: 8.9 bits;  conditional E-value: 0.00017
        Cnd1  26 LrkrLkDedpyVRktaaivvakL............ilndmvkekgflselaklleDenprVvanalaalteiseks 89 
                 Lr rL D +  VR  a+  +a+             i +   +e+g l++la l++D++++V + al++l ++ + s
  KOO21875.1  39 LRVRLGDANYEVRLEALEELAEAlgnedlslgdttIIARRLREEGSLARLALLVQDDSNEVLTRALYCLGNLCSDS 114
                 677777777777777777776643444434333333344567999************************9988765 PP

  == domain 2  score: 2.1 bits;  conditional E-value: 0.019
        Cnd1  25 pLrkrLkDedpyVRktaaivvakLilndm....vkekgflselaklleDenprVvanalaalteiseks 89 
                  L ++L  +d  V   aa ++++L ++ m      e+g  ++++ ++  +++ +   a + l ++s + 
  KOO21875.1 137 ALLRCLASPDLEVVTYAAGLCLNLSNEHMwcqlLLEQGGADRFEAMVAHDDSLIARYAASTLVNMSARI 205
                 6889999999999999**9*****66664322277999************************9999883 PP

  == domain 3  score: -1.7 bits;  conditional E-value: 0.3
        Cnd1  56 ekg.flselaklleDenprVvanalaalteiseksenaiynll..pdiisklsdalnecsew 114
                 e    +s+ a++ + ++++V + a   l+ +   +++a+ +     d++  l +al e+ e 
  KOO21875.1 600 EAAvSVSTAARATQQSDAKVATFAAQTLKALEAVQSTALETAAaeADTLAALDTALVEAAES 661
                 44446777788889999999999999999998886655544331155566666666665555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (858 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2399  (0.133806); expected 358.6 (0.02)
Passed bias filter:                      511  (0.0285013); expected 358.6 (0.02)
Passed Vit filter:                        67  (0.00373696); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.95u 0.30s 00:00:01.25 Elapsed: 00:00:00.49
# Mc/sec: 5264.54
//
Query:       KOO21876.1  [L=336]
Description: hypothetical protein Ctob_005457 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
        4.7    6.3  12.4        1.1    8.4   2.6    2.1  2  Cas_Cas1  CRISPR associated protein Cas1


Domain annotation for each model (and alignments):
>> Cas_Cas1  CRISPR associated protein Cas1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.3   2.4    0.0021        37      97     160 ..       2      69 ..       1      79 [. 0.78
   2 ?    8.4   2.6     6e-05       1.1      53     141 ..     168     258 ..     155     277 .. 0.76

  Alignments for each domain:
  == domain 1  score: 3.3 bits;  conditional E-value: 0.0021
                 HHHHHHHHHHHHHHHHHHHHHHCCHHCTT....HHHHCHCHHHHHHHHHHHH-HSHHHHHHHHHHHHH CS
    Cas_Cas1  97 rlelakkivagklenqrkvlrrlkrdree....eeleeaieeleelleklekaesleeLrgiEGeaak 160
                 r++la+++  ++++n ++ l+   ++  +    ++ +e +++ +e + ++e+      L g E++aa+
  KOO21876.1   2 RMRLARACTISAISNVQAALKVEYQRAYSlsmaKRAAEVLAQAAEDVVATEADAHAAALAGAEASAAA 69 
                 789****************99666666334445666666666666666666669999999**999986 PP

  == domain 2  score: 8.4 bits;  conditional E-value: 6e-05
                 HHHTT-EEEEE-TTS-EEEEEEESSSSTHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCTT..HHHHCHCHHHHHHHHH CS
    Cas_Cas1  53 laekgipvvflsengkylgrlepeesgnvelrraQyraaddeekrlelakkivagklenqrkvlrrlkrdree..eeleeaieeleellek 141
                  a+k i v++ +++gk +  + +++   ++  ++ ++aa+ +++r+e a + v + + n+ ++ +r++    +  ++l+ a +  + ++++
  KOO21876.1 168 FARKLIVVLLGQSTGKTFQAIFQPNDAIGQQALQVFKAAQADAARAERAAAAVGANAGNSTRNAHRAETAAARaqKALSTARDAADLAAQQ 258
                 45566667777788999999999999999999999********************************999944434444444444433333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (336 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1553  (0.0866194); expected 358.6 (0.02)
Passed bias filter:                      423  (0.0235931); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.55u 0.27s 00:00:00.82 Elapsed: 00:00:00.45
# Mc/sec: 2241.59
//
Query:       KOO21877.1  [L=1230]
Description: hypothetical protein Ctob_005455, partial [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
     0.0034   17.1   1.3     0.0087   15.8   1.3    1.7  1  SAP       SAP domain


Domain annotation for each model (and alignments):
>> SAP  SAP domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   1.3   4.8e-07    0.0087       4      35 .]     731     763 ..     731     763 .. 0.92

  Alignments for each domain:
  == domain 1  score: 15.8 bits;  conditional E-value: 4.8e-07
                 --HHHHHHHHHHTT--TTS-.HHHHHHHHHHHH CS
         SAP   4 ltVaeLKeeLkkrGLptsGk.KaeLieRLkeyl 35 
                 l+ aeL++eL + GL+t+G   a+L eRL+e+l
  KOO21877.1 731 LKLAELRAELTRAGLDTKGGrEAVLAERLQEHL 763
                 799*****************5589*******97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1230 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       918  (0.051202); expected 358.6 (0.02)
Passed bias filter:                      441  (0.024597); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.83u 0.26s 00:00:01.08 Elapsed: 00:00:00.44
# Mc/sec: 8330.34
//
Query:       KOO21878.1  [L=157]
Description: solute carrier family 35 member c2 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    8.9e-09   35.1   9.6    1.2e-08   34.7   9.6    1.0  1  TPT       Triose-phosphate Transporter family


Domain annotation for each model (and alignments):
>> TPT  Triose-phosphate Transporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.7   9.6   6.6e-13   1.2e-08       3     110 ..      40     151 ..      39     154 .. 0.91

  Alignments for each domain:
  == domain 1  score: 34.7 bits;  conditional E-value: 6.6e-13
         TPT   3 lgllfllWYllnvvfnilnKkilnvf..pyPltvsavqllvgsvlilvlwalglkkrpkisse.flkailplalvktlghv.lavvslskvaVSfthtv 97 
                 +++++llWY+++++  ++nK ++ v+   +Pl+v+a++l++ +vl+++++ l+l + p i+ + ++++ +  a + t++ + l++ s+  v+V    +v
  KOO21878.1  40 IVTFVLLWYTASTALIFINKWAFGVAriRFPLMVTAAHLAMKTVLAALTLCLQLGSLPTIKHThTTWVAFACAGCATATDIaLSNASFMYVTVTTYIIV 138
                 567899*****************998779********************************99777777888888888876379*************** PP

         TPT  98 KasePiFtvilsr 110
                 K+s P++   +s 
  KOO21878.1 139 KSSVPAWILCFSL 151
                 *******999885 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (157 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       764  (0.0426125); expected 358.6 (0.02)
Passed bias filter:                      370  (0.020637); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.25s 00:00:00.64 Elapsed: 00:00:00.40
# Mc/sec: 1166.56
//
Query:       KOO21879.1  [L=2221]
Description: beta-glucan synthesis-associated [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   3.1e-117  379.5 155.3      2e-07   30.8   0.4   42.1 43  Arm              Armadillo/beta-catenin-like repeat
    5.1e-11   42.5   0.0        2.6    8.1   0.0   10.9 13  Atx10homo_assoc  Spinocerebellar ataxia type 10 protein domai
    6.6e-08   32.3   4.2        1.3    8.5   0.0    9.0 11  Arm_2            Armadillo-like
    1.8e-06   27.6  12.8       0.15   11.5   0.0    7.8  8  DUF5578          Family of unknown function (DUF5578)
    3.7e-05   23.8   0.2         23    5.0   0.0    6.3  7  Cnd1             non-SMC mitotic condensation complex subunit
    0.00023   20.6   0.0         10    5.3   0.0    5.7  5  V-ATPase_H_N     V-ATPase subunit H
     0.0007   18.7   5.8        1.8    7.5   0.0    7.5 10  RICTOR_N         Rapamycin-insensitive companion of mTOR, N-t
      0.002   18.2   0.0          5    7.3   0.0    4.8  6  V-ATPase_H_C     V-ATPase subunit H


Domain annotation for each model (and alignments):
>> Arm  Armadillo/beta-catenin-like repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.8   0.2    0.0016       3.6      11      41 .]      52      82 ..      43      82 .. 0.91
   2 !    6.9   0.2    0.0031         7       8      39 ..      89     120 ..      84     122 .. 0.87
   3 !   11.1   0.0   0.00014      0.32       2      41 .]     122     161 ..     121     161 .. 0.93
   4 !   11.6   0.3    0.0001      0.23       9      41 .]     171     201 ..     167     201 .. 0.93
   5 !   21.0   0.6   1.1e-07   0.00024       2      41 .]     203     243 ..     202     243 .. 0.96
   6 !   21.7   0.1   6.4e-08   0.00014       6      41 .]     250     285 ..     244     285 .. 0.87
   7 !   10.1   0.0    0.0003      0.67       2      33 ..     288     319 ..     287     327 .. 0.88
   8 !    8.4   0.2     0.001       2.3       2      40 ..     410     448 ..     409     449 .. 0.92
   9 ?    3.5   0.4     0.035        80      10      40 ..     455     486 ..     452     487 .. 0.91
  10 ?    1.7   0.4      0.13     3e+02      17      37 ..     505     525 ..     503     526 .. 0.94
  11 !    9.9   0.3   0.00033      0.75       6      40 ..     534     568 ..     532     568 .. 0.93
  12 ?   -1.6   0.0       1.4   3.2e+03       7      22 ..     577     592 ..     573     604 .. 0.79
  13 !   14.1   0.0   1.6e-05     0.036       4      24 ..     622     642 ..     620     643 .. 0.91
  14 !   12.4   0.0   5.5e-05      0.12       1      26 [.     640     665 ..     640     669 .. 0.92
  15 ?    3.2   0.0     0.045     1e+02      30      41 .]     707     718 ..     688     718 .. 0.86
  16 !   25.7   0.0   3.5e-09   7.9e-06       1      41 []     720     761 ..     720     761 .. 0.96
  17 ?   -0.3   0.0      0.57   1.3e+03       7      19 ..     768     780 ..     766     788 .. 0.82
  18 !   30.8   0.4   8.8e-11     2e-07       4      40 ..     821     857 ..     818     858 .. 0.92
  19 !   13.0   0.2   3.7e-05     0.082       3      37 ..     862     896 ..     860     900 .. 0.94
  20 !   10.2   0.0   0.00027      0.61       2      30 ..     903     932 ..     902     943 .. 0.74
  21 ?    2.5   0.0     0.074   1.7e+02       3      25 ..     989    1012 ..     988    1030 .. 0.81
  22 !   13.7   0.2   2.2e-05     0.049       6      41 .]    1042    1077 ..    1037    1077 .. 0.94
  23 !    9.9   0.0   0.00034      0.76      11      29 ..    1088    1106 ..    1083    1117 .. 0.88
  24 !    7.2   0.1    0.0024       5.4       7      37 ..    1123    1153 ..    1121    1156 .. 0.93
  25 !   11.0   0.0   0.00016      0.36      12      41 .]    1171    1200 ..    1165    1200 .. 0.94
  26 ?    3.3   0.1     0.042        94       5      21 ..    1231    1247 ..    1228    1247 .. 0.92
  27 !   26.4   0.1   2.1e-09   4.7e-06       3      41 .]    1382    1420 ..    1380    1420 .. 0.93
  28 !    8.4   0.2     0.001       2.3       8      40 ..    1428    1460 ..    1424    1461 .. 0.93
  29 !   17.7   0.3   1.2e-06    0.0026       7      40 ..    1559    1592 ..    1558    1593 .. 0.95
  30 !   12.2   0.0   6.6e-05      0.15       6      41 .]    1599    1634 ..    1594    1634 .. 0.87
  31 !    6.6   0.0    0.0039       8.7      16      40 ..    1646    1671 ..    1643    1672 .. 0.93
  32 !   21.2   0.1   9.5e-08   0.00021       8      37 ..    1681    1710 ..    1674    1714 .. 0.92
  33 ?   -3.8   0.0       6.8   1.5e+04      17      33 ..    1727    1743 ..    1727    1744 .. 0.86
  34 ?    3.9   0.0     0.026        58       2      22 ..    1753    1773 ..    1752    1780 .. 0.88
  35 !   16.9   0.1   2.1e-06    0.0047       3      37 ..    1806    1840 ..    1803    1844 .. 0.91
  36 !   17.1   0.2   1.8e-06    0.0041       8      40 ..    1853    1886 ..    1846    1887 .. 0.91
  37 !   20.2   2.0     2e-07   0.00045       7      37 ..    1895    1925 ..    1890    1929 .. 0.88
  38 !    8.3   0.0    0.0011       2.5      10      29 ..    1940    1959 ..    1937    1970 .. 0.86
  39 !   19.0   0.1   4.7e-07    0.0011       2      40 ..    1978    2017 ..    1977    2018 .. 0.93
  40 !   10.7   0.1   0.00019      0.43       2      40 ..    2021    2059 ..    2020    2060 .. 0.90
  41 ?    1.6   0.0      0.14   3.1e+02       3      27 ..    2104    2128 ..    2102    2130 .. 0.84
  42 ?   -2.0   0.1       1.9   4.3e+03      29      40 ..    2183    2194 ..    2180    2195 .. 0.86
  43 ?    3.0   0.0      0.05   1.1e+02       1      20 [.    2197    2216 ..    2197    2220 .. 0.87

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 0.0016
                TTHHHHHHHHTTTSSHHHHHHHHHHHHHHTT CS
         Arm 11 aGavppLvrLLssedeevqeeAawALsNLaa 41
                 G++p+L+ +Lss+ ++ q  A ++L+ Laa
  KOO21879.1 52 VGVLPVLIGMLSSGTDGGQLYASSCLASLAA 82
                79*************************9986 PP

  == domain 2  score: 6.9 bits;  conditional E-value: 0.0031
                 HHHTTHHHHHHHHTTTSSHHHHHHHHHHHHHH CS
         Arm   8 vieaGavppLvrLLssedeevqeeAawALsNL 39 
                 +++ Ga+ pLv+ L+ ++ + + +Aa+AL  L
  KOO21879.1  89 IVKGGAIGPLVQVLKVGSMGAVAAAASALLGL 120
                 66779***********************9655 PP

  == domain 3  score: 11.1 bits;  conditional E-value: 0.00014
                 HHHHHHHHHTTHHHHHHHHTTTSSHHHHHHHHHHHHHHTT CS
         Arm   2 senkdavieaGavppLvrLLssedeevqeeAawALsNLaa 41 
                 +e+  ++i+ ++  p+vrLL+ ++++ +e +a+ ++NL++
  KOO21879.1 122 EEHAPELIKTNVTAPFVRLLKQGNTDAREHIASMIANLSR 161
                 5778899*******************************97 PP

  == domain 4  score: 11.6 bits;  conditional E-value: 0.0001
                 HHTTHHHHHHHHTTTSSHHHHHHHHHHHHHHTT CS
         Arm   9 ieaGavppLvrLLssedeevqeeAawALsNLaa 41 
                 + aGav+ L+r+Ls  + +++  AawA++ L++
  KOO21879.1 171 VGAGAVEELLRMLS--SAKTCNTAAWAIASLCS 201
                 679***********..999************96 PP

  == domain 5  score: 21.0 bits;  conditional E-value: 1.1e-07
                 HHHHHHHHHTTHHHHHHHHTT.TSSHHHHHHHHHHHHHHTT CS
         Arm   2 senkdavieaGavppLvrLLs.sedeevqeeAawALsNLaa 41 
                 se+ +a+  aG++  L++LL+ s +++ q +Aa+A+sNLa+
  KOO21879.1 203 SEHVEAISAAGGIAKLLELLNtSINTTSQVAAAAAVSNLAR 243
                 789999*********************************97 PP

  == domain 6  score: 21.7 bits;  conditional E-value: 6.4e-08
                 HHHHHTTHHHHHHHHTTTSSHHHHHHHHHHHHHHTT CS
         Arm   6 davieaGavppLvrLLssedeevqeeAawALsNLaa 41 
                  a+ +aG++ pL++LL s +++ q +Aa A++ L+a
  KOO21879.1 250 TAIAKAGGIGPLLALLASRSPQAQAQAAEAVGRLCA 285
                 3556******************************96 PP

  == domain 7  score: 10.1 bits;  conditional E-value: 0.0003
                 HHHHHHHHHTTHHHHHHHHTTTSSHHHHHHHH CS
         Arm   2 senkdavieaGavppLvrLLssedeevqeeAa 33 
                  +n dav ++G+vp L  LL s+   vq  Aa
  KOO21879.1 288 RDNQDAVGRMGGVPSLAGLLASGTLPVQAMAA 319
                 589*********************99999998 PP

  == domain 8  score: 8.4 bits;  conditional E-value: 0.001
                 HHHHHHHHHTTHHHHHHHHTTTSSHHHHHHHHHHHHHHT CS
         Arm   2 senkdavieaGavppLvrLLssedeevqeeAawALsNLa 40 
                 + n+  +  +Ga+ pL +LL s+  + +  A+ AL++La
  KOO21879.1 410 EANRVSIAASGALAPLAALLASGGARGRVHATHALAHLA 448
                 568999999***************************998 PP

  == domain 9  score: 3.5 bits;  conditional E-value: 0.035
                 HTTHHHHHHHHTT.TSSHHHHHHHHHHHHHHT CS
         Arm  10 eaGavppLvrLLs.sedeevqeeAawALsNLa 40 
                 ++G+   Lv LL  s  +e +++Aa  L+ L 
  KOO21879.1 455 QHGVTTLLVGLLApSSAVEARKAAAELLWRLV 486
                 7899999*********************9986 PP

  == domain 10  score: 1.7 bits;  conditional E-value: 0.13
                 HHHHTTTSSHHHHHHHHHHHH CS
         Arm  17 LvrLLssedeevqeeAawALs 37 
                 Lv+LL++ d + +  A+wALs
  KOO21879.1 505 LVELLKTSDADARAFALWALS 525
                 9*******************8 PP

  == domain 11  score: 9.9 bits;  conditional E-value: 0.00033
                 HHHHHTTHHHHHHHHTTTSSHHHHHHHHHHHHHHT CS
         Arm   6 davieaGavppLvrLLssedeevqeeAawALsNLa 40 
                  +v e G+v pL++ L++     +e+Aa+AL+ La
  KOO21879.1 534 ATVLEVGGVAPLLAVLRTSGSLQREQAAAALARLA 568
                 5789***************************9886 PP

  == domain 12  score: -1.6 bits;  conditional E-value: 1.4
                 HHHHTTHHHHHHHHTT CS
         Arm   7 avieaGavppLvrLLs 22 
                 a+   G++ pL++  +
  KOO21879.1 577 AIAAEGGISPLLNIVE 592
                 67789******99766 PP

  == domain 13  score: 14.1 bits;  conditional E-value: 1.6e-05
                 HHHHHHHTTHHHHHHHHTTTS CS
         Arm   4 nkdavieaGavppLvrLLsse 24 
                 n+d+++e+G++ pLv+LL+++
  KOO21879.1 622 NRDTIVESGGITPLVALLNDD 642
                 9*****************976 PP

  == domain 14  score: 12.4 bits;  conditional E-value: 5.5e-05
                 SHHHHHHHHHTTHHHHHHHHTTTSSH CS
         Arm   1 nsenkdavieaGavppLvrLLssede 26 
                 n++n++a+ eaGa+ +Lv LL s ++
  KOO21879.1 640 NDDNRIAIAEAGAIGHLVLLLGSANP 665
                 799*******************9987 PP

  == domain 15  score: 3.2 bits;  conditional E-value: 0.045
                 HHHHHHHHHHTT CS
         Arm  30 eeAawALsNLaa 41 
                 e+Aa+AL+NLa+
  KOO21879.1 707 EQAAAALANLAS 718
                 89********96 PP

  == domain 16  score: 25.7 bits;  conditional E-value: 3.5e-09
                 SHHHHHHHHHTTHHHHHHHHTT.TSSHHHHHHHHHHHHHHTT CS
         Arm   1 nsenkdavieaGavppLvrLLs.sedeevqeeAawALsNLaa 41 
                 ++ n+d ++eaG++ pL++LL+ s +++ +e A +A+s La+
  KOO21879.1 720 SDANRDSIVEAGGIAPLLSLLEtSSSTKAKERAIGAISQLAS 761
                 578************************************996 PP

  == domain 17  score: -0.3 bits;  conditional E-value: 0.57
                 HHHHTTHHHHHHH CS
         Arm   7 avieaGavppLvr 19 
                 ++ +aG++p L +
  KOO21879.1 768 EIAKAGGIPLLAS 780
                 789*******976 PP

  == domain 18  score: 30.8 bits;  conditional E-value: 8.8e-11
                 HHHHHHHTTHHHHHHHHTTTSSHHHHHHHHHHHHHHT CS
         Arm   4 nkdavieaGavppLvrLLssedeevqeeAawALsNLa 40 
                 n  a+ +aGa++pLv++L s++ ++q +Aa+AL+ La
  KOO21879.1 821 NQTALADAGAIQPLVAMLGSPNSDMQANAACALGTLA 857
                 667899***************************9887 PP

  == domain 19  score: 13.0 bits;  conditional E-value: 3.7e-05
                 HHHHHHHHTTHHHHHHHHTTTSSHHHHHHHHHHHH CS
         Arm   3 enkdavieaGavppLvrLLssedeevqeeAawALs 37 
                 +n  a+ + Ga+ pL +L + + + v+e +a+AL+
  KOO21879.1 862 DNQAAIARTGAIAPLTSLVREGAPLVKEMCAGALW 896
                 7999******************************9 PP

  == domain 20  score: 10.2 bits;  conditional E-value: 0.00027
                 HHHHHHHHHTTHHHHHHHHTT.TSSHHHHH CS
         Arm   2 senkdavieaGavppLvrLLs.sedeevqe 30 
                  +nk +v ++G+v+pLv LL   + e  + 
  KOO21879.1 903 APNKSTVTKLGGVEPLVGLLVsGGTEASLI 932
                 589*****************9555555555 PP

  == domain 21  score: 2.5 bits;  conditional E-value: 0.074
                  HHHHHHHHTTHHHHHHHHTT.TSS CS
         Arm    3 enkdavieaGavppLvrLLs.sed 25  
                   n  a+ +aG++p L++ Ls s d
  KOO21879.1  989 ANQLALAKAGGLPSLIAWLSgSAD 1012
                  68899***********98887555 PP

  == domain 22  score: 13.7 bits;  conditional E-value: 2.2e-05
                  HHHHHTTHHHHHHHHTTTSSHHHHHHHHHHHHHHTT CS
         Arm    6 davieaGavppLvrLLssedeevqeeAawALsNLaa 41  
                   a++++ a+ppL++L+    ++ q  Aa++L +Laa
  KOO21879.1 1042 AAIVQLDAIPPLIELIIKAEQQAQAYAARTLFHLAA 1077
                  699******************************996 PP

  == domain 23  score: 9.9 bits;  conditional E-value: 0.00034
                  TTHHHHHHHHTTTSSHHHH CS
         Arm   11 aGavppLvrLLssedeevq 29  
                  aG+v pLv+LLsse++ ++
  KOO21879.1 1088 AGGVAPLVHLLSSEHPHLV 1106
                  8************999875 PP

  == domain 24  score: 7.2 bits;  conditional E-value: 0.0024
                  HHHHTTHHHHHHHHTTTSSHHHHHHHHHHHH CS
         Arm    7 avieaGavppLvrLLssedeevqeeAawALs 37  
                  av  aG++ pL +L+s ++   q+ Aa+AL+
  KOO21879.1 1123 AVAVAGGIAPLTKLISMGSHAAQQHAASALA 1153
                  7889*************************96 PP

  == domain 25  score: 11.0 bits;  conditional E-value: 0.00016
                  THHHHHHHHTTTSSHHHHHHHHHHHHHHTT CS
         Arm   12 GavppLvrLLssedeevqeeAawALsNLaa 41  
                  G +++Lv+LL s   ++ e+Aa+ALs La+
  KOO21879.1 1171 GSIQALVHLLGSHVAGTPEVAARALSQLAR 1200
                  889*************************97 PP

  == domain 26  score: 3.3 bits;  conditional E-value: 0.042
                  HHHHHHTTHHHHHHHHT CS
         Arm    5 kdavieaGavppLvrLL 21  
                  ++++  +G++++L+++L
  KOO21879.1 1231 RQLILACGGIDRLIAML 1247
                  79999*********998 PP

  == domain 27  score: 26.4 bits;  conditional E-value: 2.1e-09
                  HHHHHHHHTTHHHHHHHHTTTSSHHHHHHHHHHHHHHTT CS
         Arm    3 enkdavieaGavppLvrLLssedeevqeeAawALsNLaa 41  
                      a+  aG+vppL+rL++ ++   qe+A +A+++L+a
  KOO21879.1 1382 AMQSAILAAGGVPPLLRLIREGSAASQEAASRAIWHLCA 1420
                  5678999*******************************7 PP

  == domain 28  score: 8.4 bits;  conditional E-value: 0.001
                  HHHTTHHHHHHHHTTTSSHHHHHHHHHHHHHHT CS
         Arm    8 vieaGavppLvrLLssedeevqeeAawALsNLa 40  
                  ++ +Gav+ Lv+L +++++  q  Aa+ +s La
  KOO21879.1 1428 LVACGAVEELVALSRNGSPAAQDTAAAVISDLA 1460
                  789*************************99887 PP

  == domain 29  score: 17.7 bits;  conditional E-value: 1.2e-06
                  HHHHTTHHHHHHHHTTTSSHHHHHHHHHHHHHHT CS
         Arm    7 avieaGavppLvrLLssedeevqeeAawALsNLa 40  
                  a+  aG++ pLv+L +s+++  +e Aa+AL++La
  KOO21879.1 1559 AIAAAGGIVPLVSLVQSGSQAGKERAASALWHLA 1592
                  57789***************************98 PP

  == domain 30  score: 12.2 bits;  conditional E-value: 6.6e-05
                  HHHHHTTHHHHHHHHTTTSSHHHHHHHHHHHHHHTT CS
         Arm    6 davieaGavppLvrLLssedeevqeeAawALsNLaa 41  
                   a+ +aG++ pLv+LL+++  + +  Aa AL++La+
  KOO21879.1 1599 VAIAKAGGIAPLVQLLDDGTLQGTIFAADALTHLAR 1634
                  6899*************9999999999999999886 PP

  == domain 31  score: 6.6 bits;  conditional E-value: 0.0039
                  HHHHHTT.TSSHHHHHHHHHHHHHHT CS
         Arm   16 pLvrLLs.sedeevqeeAawALsNLa 40  
                   Lv LL+ +  +++++ Aa+AL+ La
  KOO21879.1 1646 KLVGLLEvDRPDGTLRRAARALWKLA 1671
                  69*********************998 PP

  == domain 32  score: 21.2 bits;  conditional E-value: 9.5e-08
                  HHHTTHHHHHHHHTTTSSHHHHHHHHHHHH CS
         Arm    8 vieaGavppLvrLLssedeevqeeAawALs 37  
                  v++aGa+ pLv+LL s++ e + eA++AL+
  KOO21879.1 1681 VVNAGAISPLVALLGSGSMEAKSEAVGALT 1710
                  9****************************7 PP

  == domain 33  score: -3.8 bits;  conditional E-value: 6.8
                  HHHHTTTSSHHHHHHHH CS
         Arm   17 LvrLLssedeevqeeAa 33  
                  Lv+LL s+  e qe ++
  KOO21879.1 1727 LVALLGSGTAESQEHVT 1743
                  89****99999998776 PP

  == domain 34  score: 3.9 bits;  conditional E-value: 0.026
                  HHHHHHHHHTTHHHHHHHHTT CS
         Arm    2 senkdavieaGavppLvrLLs 22  
                  ++n +a+ +aGav++L+  L+
  KOO21879.1 1753 PDNLRAIAHAGAVQRLIVQLR 1773
                  68889************9886 PP

  == domain 35  score: 16.9 bits;  conditional E-value: 2.1e-06
                  HHHHHHHHTTHHHHHHHHTTTSSHHHHHHHHHHHH CS
         Arm    3 enkdavieaGavppLvrLLssedeevqeeAawALs 37  
                   n  a++ +G+++ Lv+LLs e+ee q +Aa  L+
  KOO21879.1 1806 ANAHAIVAHGGLRYLVALLSAESEEAQVNAADVLC 1840
                  5899***************************9986 PP

  == domain 36  score: 17.1 bits;  conditional E-value: 1.8e-06
                  HHHTTHHHHHHHHTT.TSSHHHHHHHHHHHHHHT CS
         Arm    8 vieaGavppLvrLLs.sedeevqeeAawALsNLa 40  
                  v   Gav++Lv+LLs ++  + +++Aa+AL+ L+
  KOO21879.1 1853 VAAEGAVEILVKLLSaTGPLRARTAAAGALWSLS 1886
                  6778***************************998 PP

  == domain 37  score: 20.2 bits;  conditional E-value: 2e-07
                  HHHHTTHHHHHHHHTTTSSHHHHHHHHHHHH CS
         Arm    7 avieaGavppLvrLLssedeevqeeAawALs 37  
                  av  aGa+p Lv+LL ++d + q++Aa AL+
  KOO21879.1 1895 AVTAAGAIPELVQLLCTDDAGAQRQAAVALA 1925
                  5669*************************97 PP

  == domain 38  score: 8.3 bits;  conditional E-value: 0.0011
                  HTTHHHHHHHHTTTSSHHHH CS
         Arm   10 eaGavppLvrLLssedeevq 29  
                  +aG+++pLvrLL+    ++q
  KOO21879.1 1940 RAGGIEPLVRLLDAAAARTQ 1959
                  89**********98777776 PP

  == domain 39  score: 19.0 bits;  conditional E-value: 4.7e-07
                  HHHHHHHHHTTHHHHHHHHTT.TSSHHHHHHHHHHHHHHT CS
         Arm    2 senkdavieaGavppLvrLLs.sedeevqeeAawALsNLa 40  
                  + n  av  aG+++pLv+ ++  + e+ +eeAa+AL+ L+
  KOO21879.1 1978 PANQAAVAAAGGIEPLVAIIRdAGAEDAKEEAATALWALT 2017
                  78999*******************************9665 PP

  == domain 40  score: 10.7 bits;  conditional E-value: 0.00019
                  HHHHHHHHHTTHHHHHHHHTTTSSHHHHHHHHHHHHHHT CS
         Arm    2 senkdavieaGavppLvrLLssedeevqeeAawALsNLa 40  
                  ++n  a  eaGa+ pL+++L  + ++ q +Aa+AL+ +a
  KOO21879.1 2021 PPNQTASAEAGAIVPLIAMLGAGGTRAQAQAASALASMA 2059
                  67888889***************************8765 PP

  == domain 41  score: 1.6 bits;  conditional E-value: 0.14
                  HHHHHHHHTTHHHHHHHHTTTSSHH CS
         Arm    3 enkdavieaGavppLvrLLssedee 27  
                   n  a+  +Ga+  LvrLL+++  +
  KOO21879.1 2104 ANQAALAAHGALVSLVRLLRCTCLD 2128
                  58899999************87765 PP

  == domain 42  score: -2.0 bits;  conditional E-value: 1.9
                  HHHHHHHHHHHT CS
         Arm   29 qeeAawALsNLa 40  
                  ++e+a+AL+ +a
  KOO21879.1 2183 RREIACALWSMA 2194
                  799******987 PP

  == domain 43  score: 3.0 bits;  conditional E-value: 0.05
                  SHHHHHHHHHTTHHHHHHHH CS
         Arm    1 nsenkdavieaGavppLvrL 20  
                  +s n +a+   G+vp L+r 
  KOO21879.1 2197 SSANQEAIAAEGGVPLLIRA 2216
                  57899************985 PP

>> Atx10homo_assoc  Spinocerebellar ataxia type 10 protein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.0       1.1   2.5e+03       2      26 ..     149     173 ..     135     212 .. 0.59
   2 !    6.4   0.0    0.0041       9.1       8      70 ..     237     297 ..     231     306 .. 0.89
   3 ?   -0.5   0.0      0.56   1.2e+03      48      70 ..     439     461 ..     436     480 .. 0.81
   4 ?    0.4   0.0      0.31   6.8e+02      20      68 ..     533     579 ..     529     592 .. 0.72
   5 !    8.1   0.0    0.0012       2.6       8      59 ..     712     762 ..     707     788 .. 0.86
   6 ?   -3.5   0.0       4.8   1.1e+04      49      69 ..     807     827 ..     805     835 .. 0.83
   7 ?    1.7   0.0      0.12   2.7e+02       9      70 ..     853     912 ..     845     919 .. 0.80
   8 ?   -1.2   0.0      0.92   2.1e+03      50      79 ..     935     964 ..     931     979 .. 0.77
   9 ?   -2.1   0.0       1.8   4.1e+03      11      32 ..    1032    1053 ..    1019    1062 .. 0.62
  10 ?    2.2   0.0      0.08   1.8e+02       7      59 ..    1371    1421 ..    1365    1437 .. 0.79
  11 ?    4.4   0.0     0.017        38       8      65 ..    1969    2025 ..    1964    2032 .. 0.88
  12 ?   -2.6   0.1       2.5   5.7e+03      52      83 ..    2054    2085 ..    2048    2110 .. 0.69
  13 ?   -3.2   0.0       3.8   8.6e+03      15      32 ..    2196    2213 ..    2183    2217 .. 0.63

  Alignments for each domain:
  == domain 1  score: -1.5 bits;  conditional E-value: 1.1
  Atx10homo_assoc   2 Krelvrllgnlvyknkevqdkvrel 26 
                      ++++ ++++nl+  + ++   ++  
       KOO21879.1 149 REHIASMIANLSRASFDAEAAFVGA 173
                      3344445555555555555555555 PP

  == domain 2  score: 6.4 bits;  conditional E-value: 0.0041
  Atx10homo_assoc   8 llgnlvyknkevqdkvreldgleliLsqcniDdnnPfirewailairnLlegneenqelvaeL 70 
                       ++nl+ +++ +q  + + +g+  +L      ++ P  + +a  a+  L+ + ++nq+ v ++
       KOO21879.1 237 AVSNLARDHPPTQTAIAKAGGIGPLLALL--ASRSPQAQAQAAEAVGRLCAHHRDNQDAVGRM 297
                      589999999999999*******9999865..5789999999****************999876 PP

  == domain 3  score: -0.5 bits;  conditional E-value: 0.56
  Atx10homo_assoc  48 wailairnLlegneenqelvaeL 70 
                      +a+ a+ +L  +n++nq+ v +L
       KOO21879.1 439 HATHALAHLAIENAANQHGVTTL 461
                      7899999999*******999887 PP

  == domain 4  score: 0.4 bits;  conditional E-value: 0.31
  Atx10homo_assoc  20 qdkvreldgleliLsqcniDdnnPfirewailairnLlegneenqelva 68 
                      q +v e +g++ +L   ++  +  + re+a  a+  L +g++++q+ +a
       KOO21879.1 533 QATVLEVGGVAPLLAVLRT--SGSLQREQAAAALARLANGSAAAQAAIA 579
                      5666666777777765544..4557788888888888888888888876 PP

  == domain 5  score: 8.1 bits;  conditional E-value: 0.0012
  Atx10homo_assoc   8 llgnlvyknkevqdkvreldgleliLsqcniDdnnPfirewailairnLleg 59 
                       l+nl+ ++ +++d ++e +g++ +Ls  ++ ++    +e+ai ai +L   
       KOO21879.1 712 ALANLASDSDANRDSIVEAGGIAPLLSLLETSSST-KAKERAIGAISQLASR 762
                      69*************************99987655.6799999999998654 PP

  == domain 6  score: -3.5 bits;  conditional E-value: 4.8
  Atx10homo_assoc  49 ailairnLlegneenqelvae 69 
                      a +a  +L +gn+ nq  +a+
       KOO21879.1 807 AAFAASQLAKGNRLNQTALAD 827
                      678888999*******98875 PP

  == domain 7  score: 1.7 bits;  conditional E-value: 0.12
  Atx10homo_assoc   9 lgnlvyknkevqdkvreldgleliLsqcniDdnnPfirewailairnLlegneenqelvaeL 70 
                      lg+l+  + ++q  + + ++++ + s   + +  P+++e +  a+  ++++ + n++ v +L
       KOO21879.1 853 LGTLAEAHADNQAAIARTGAIAPLTSL--VREGAPLVKEMCAGALWAVCDDHAPNKSTVTKL 912
                      677777778888888888888887654..457889999999999999999999999999988 PP

  == domain 8  score: -1.2 bits;  conditional E-value: 0.92
  Atx10homo_assoc  50 ilairnLlegneenqelvaeLeakgvvdee 79 
                      + a+  L  + +en+e +a+L   ++ ++ 
       KOO21879.1 935 VGALVSLATKHPENREAIAKLLVARLSSRV 964
                      55777899999*********9876665555 PP

  == domain 9  score: -2.1 bits;  conditional E-value: 1.8
  Atx10homo_assoc   11 nlvyknkevqdkvreldgleli 32  
                       ++v +n + q  +++ld+++ +
       KOO21879.1 1032 SIVANNATLQAAIVQLDAIPPL 1053
                       3455666666666666666655 PP

  == domain 10  score: 2.2 bits;  conditional E-value: 0.08
  Atx10homo_assoc    7 rllgnlvyknkevqdkvreldgleliLsqcniDdnnPfirewailairnLleg 59  
                         l+ l+y ++++q+ + + +g++ +L  +   +     +e a  ai +L+ +
       KOO21879.1 1371 LALADLAYGDSAMQSAILAAGGVPPLLRLI--REGSAASQEAASRAIWHLCAS 1421
                       56899**********************864..466667777777777777764 PP

  == domain 11  score: 4.4 bits;  conditional E-value: 0.017
  Atx10homo_assoc    8 llgnlvyknkevqdkvreldgleliLsqcniDdnnPfirewailairnLlegneenqe 65  
                        l+ lv +++++q  v + +g+e +  ++  D+     +e a  a+  L+ + + nq 
       KOO21879.1 1969 ALAALVANHPANQAAVAAAGGIEPLV-AIIRDAGAEDAKEEAATALWALTASHPPNQT 2025
                       6899*******************966.5778999999999999*******99999997 PP

  == domain 12  score: -2.6 bits;  conditional E-value: 2.5
  Atx10homo_assoc   52 airnLlegneenqelvaeLeakgvvdeevLee 83  
                       a+  +  g + nq+ +a++  + +  e +++e
       KOO21879.1 2054 ALASMALGHSTNQSEIASMLVQLLNAEGEVDE 2085
                       55566667777888888777666655544444 PP

  == domain 13  score: -3.2 bits;  conditional E-value: 3.8
  Atx10homo_assoc   15 knkevqdkvreldgleli 32  
                        ++++q+ + +++g++l+
       KOO21879.1 2196 GSSANQEAIAAEGGVPLL 2213
                       455667777777777766 PP

>> Arm_2  Armadillo-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.8   0.0     0.059   1.3e+02     133     163 ..     131     161 ..     114     185 .. 0.82
   2 !    8.5   0.0   0.00056       1.3      13      85 ..     214     287 ..     202     297 .. 0.85
   3 ?   -1.3   0.0      0.55   1.2e+03      16      84 ..     504     570 ..     491     591 .. 0.70
   4 ?   -1.4   0.0      0.58   1.3e+03      41      68 ..     617     644 ..     606     650 .. 0.83
   5 !    6.1   0.0    0.0029       6.6       4      69 ..     723     788 ..     708     796 .. 0.85
   6 ?   -1.4   0.0      0.56   1.2e+03      14      72 ..     831     889 ..     820     905 .. 0.67
   7 ?   -1.5   0.0      0.64   1.4e+03      31      91 ..    1025    1085 ..    1020    1157 .. 0.67
   8 ?   -0.6   0.0      0.32   7.2e+02     135     166 ..    1686    1717 ..    1681    1726 .. 0.88
   9 ?    2.5   0.0     0.037        84     139     179 ..    1727    1767 ..    1721    1771 .. 0.89
  10 ?   -2.5   0.0       1.2   2.7e+03     128     169 ..    1808    1850 ..    1789    1861 .. 0.63
  11 ?    1.1   0.0       0.1   2.3e+02      24      81 ..    1958    2016 ..    1943    2034 .. 0.71

  Alignments for each domain:
  == domain 1  score: 1.8 bits;  conditional E-value: 0.059
       Arm_2 133 vsyisellsLLskGnekikvqvLkvllnlse 163
                 ++  + +++LL++Gn   + ++  ++ nls 
  KOO21879.1 131 TNVTAPFVRLLKQGNTDAREHIASMIANLSR 161
                 3445679**********************97 PP

  == domain 2  score: 8.5 bits;  conditional E-value: 0.00056
       Arm_2  13 elekllalLkssedpliqeialltlgnsa.aysvnqdiirdlggitiianllsksnaevkekalnalnnlsenv 85 
                  ++kll+lL++s + + q +a  +++n a  ++ +q  i + ggi+ + +ll +++++ + +a  a+  l   +
  KOO21879.1 214 GIAKLLELLNTSINTTSQVAAAAAVSNLArDHPPTQTAIAKAGGIGPLLALLASRSPQAQAQAAEAVGRLCAHH 287
                 679***********************96637********************************99998776544 PP

  == domain 3  score: -1.3 bits;  conditional E-value: 0.55
       Arm_2  16 kllalLkssedpliqeialltlgnsaaysvnqdiirdlggitiianllsksnaevkekalnalnnlsen 84 
                 +l++lLk+s d      al +l+ +      q+++ ++gg++ + ++l +s    +e+a  al  l+++
  KOO21879.1 504 ELVELLKTS-DADARAFALWALSLAI-DGTKQATVLEVGGVAPLLAVLRTSGSLQREQAAAALARLANG 570
                 677777654.5555666777766543.466889999999998888888888877777776666555443 PP

  == domain 4  score: -1.4 bits;  conditional E-value: 0.58
       Arm_2  41 aaysvnqdiirdlggitiianllsksna 68 
                 a  ++n+d+i + ggit + +ll++ n 
  KOO21879.1 617 ARLAANRDTIVESGGITPLVALLNDDNR 644
                 56689**********9999999999876 PP

  == domain 5  score: 6.1 bits;  conditional E-value: 0.0029
       Arm_2   4 kldevLepkelekllalLkssedpliqeialltlgnsaaysvnqdiirdlggitiianllsksnae 69 
                 + d++ e+  ++ ll+lL++s+    +e+a  +++  a     q+ i + ggi+++a+++  s+ +
  KOO21879.1 723 NRDSIVEAGGIAPLLSLLETSSSTKAKERAIGAISQLASRRTIQKEIAKAGGIPLLASVIIASQSN 788
                 55677888888999999**999999999999999999999999999999999*9999998666554 PP

  == domain 6  score: -1.4 bits;  conditional E-value: 0.56
       Arm_2  14 lekllalLkssedpliqeialltlgn.saaysvnqdiirdlggitiianllsksnaevke 72 
                 ++ l+a+L s  ++ +q  a  +lg  + a++ nq+ i   g i+ + +l+ + ++ vke
  KOO21879.1 831 IQPLVAMLGSP-NSDMQANAACALGTlAEAHADNQAAIARTGAIAPLTSLVREGAPLVKE 889
                 55566666544.344555566666642568888888888888888887777777776665 PP

  == domain 7  score: -1.5 bits;  conditional E-value: 0.64
       Arm_2   31 eialltlgnsaaysvnqdiirdlggitiianllsksnaevkekalnalnnlsenvenqkki 91  
                  e+a  +l++ a+ +  q+ i +l+ i+ + +l+ k +++ +  a  +l  l+   e ++ i
  KOO21879.1 1025 EAAHAVLSIVANNATLQAAIVQLDAIPPLIELIIKAEQQAQAYAARTLFHLAATLEGVEAI 1085
                  6677778888888888888888888865555555555555554444444444444444444 PP

  == domain 8  score: -0.6 bits;  conditional E-value: 0.32
       Arm_2  135 yisellsLLskGnekikvqvLkvllnlseNpa 166 
                   is l+ LL +G+ + k +    l +l+ N  
  KOO21879.1 1686 AISPLVALLGSGSMEAKSEAVGALTCLATNDP 1717
                  58899************************975 PP

  == domain 9  score: 2.5 bits;  conditional E-value: 0.037
       Arm_2  139 llsLLskGnekikvqvLkvllnlseNpamtrellsakvlss 179 
                  l+ LL +G  + + +v  +ll lse p+++r + +a + + 
  KOO21879.1 1727 LVALLGSGTAESQEHVTCMLLGLSEQPDNLRAIAHAGAVQR 1767
                  789*****************************999887765 PP

  == domain 10  score: -2.5 bits;  conditional E-value: 1.2
       Arm_2  128 yqhll.vsyisellsLLskGnekikvqvLkvllnlseNpamtr 169 
                   + ++ +  +++l+ LLs+ +e+ +v+   vl  ++   + ++
  KOO21879.1 1808 AHAIVaHGGLRYLVALLSAESEEAQVNAADVLCDVARRSTEIQ 1850
                  3334413457888888888888888887777777666655555 PP

  == domain 11  score: 1.1 bits;  conditional E-value: 0.1
       Arm_2   24 sedpliqeialltlgnsaaysvnqdiirdlggitiianllsk.snaevkekalnalnnl 81  
                  ++ ++  ++a+   +  a++++nq+ +   ggi  + +++ +  ++  ke a +al +l
  KOO21879.1 1958 TQGSTAAQAATALAALVANHPANQAAVAAAGGIEPLVAIIRDaGAEDAKEEAATALWAL 2016
                  66677778888888889**************9965555554404555666666666544 PP

>> DUF5578  Family of unknown function (DUF5578)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.5   0.0   6.6e-05      0.15      97     240 ..     168     316 ..     128     350 .. 0.75
   2 ?    3.5   0.0     0.018        40     154     244 ..     464     562 ..     449     581 .. 0.68
   3 ?    2.2   0.0     0.043        97      99     167 ..     727     793 ..     715     800 .. 0.83
   4 ?   -2.4   0.0       1.1   2.5e+03     219     253 ..     826     860 ..     811     869 .. 0.80
   5 ?   -1.4   0.1      0.57   1.3e+03     166     256 ..    1024    1123 ..    1019    1134 .. 0.65
   6 !    6.8   0.0    0.0017       3.9     170     266 ..    1627    1731 ..    1569    1751 .. 0.80
   7 ?   -0.7   0.1      0.34   7.6e+02     193     259 ..    1781    1854 ..    1776    1869 .. 0.53
   8 ?    3.4   0.1     0.019        43     154     250 ..    1995    2099 ..    1939    2122 .. 0.73

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 6.6e-05
     DUF5578  97 ieFlEiGGvltlleilglkqlkeedkaealkllqlvanaGrkyKEliCEsygvravaeclakskseetqeeaqklleslaegnPkyqkqvykg.....l 190
                 + F+  G v  ll +l+  ++ ++  a+a+  l   +     + E i  + g+ ++ e+l +s + ++q +a + +++la+  P  q+ + k+     l
  KOO21879.1 168 AAFVGAGAVEELLRMLSSAKTCNT-AAWAIASLCSCS----EHVEAISAAGGIAKLLELLNTSINTTSQVAAAAAVSNLARDHPPTQTAIAKAggigpL 261
                 468888888889988888777654.567777666554....57899********************************************99666667* PP

     DUF5578 191 iallacsspkaqqlalqtlrvvqeivkeak.....psivepllelLkslhlevqy 240
                 +alla++sp+aq  a++++  +  + ++ +     +  v +l  lL+s  l vq+
  KOO21879.1 262 LALLASRSPQAQAQAAEAVGRLCAHHRDNQdavgrMGGVPSLAGLLASGTLPVQA 316
                 ************9999888554443333220112234466666666666666665 PP

  == domain 2  score: 3.5 bits;  conditional E-value: 0.018
     DUF5578 154 eclakskseetqeeaqklleslaegnPkyqkqvy.....kgliallacsspkaqqlalqtlrvvqeivkeak...psivepllelLkslhlevqyeaie 244
                  +la s+  e++++a +ll+ l++ n    + +      + l+ ll++s   a+ +al +l ++ + +k+a+      v pll++L++  +  + +a  
  KOO21879.1 464 GLLAPSSAVEARKAAAELLWRLVRENDASVEIIAaassaSELVELLKTSDADARAFALWALSLAIDGTKQATvleVGGVAPLLAVLRTSGSLQREQAAA 562
                 578888888888888999999988888776655411111568888888888888888888888888777776333456788888888765444444444 PP

  == domain 3  score: 2.2 bits;  conditional E-value: 0.043
     DUF5578  99 FlEiGGvltlleilglkqlkeedkaealkllqlvanaGrkyKEliCEsygvravaeclakskseetqee 167
                  +E GG+  ll +l  + +  + k++a+  ++ +a+  +  KE i  + g+  +a ++  s+s+  qe+
  KOO21879.1 727 IVEAGGIAPLLSLLETSSS-TKAKERAIGAISQLASRRTIQKE-IAKAGGIPLLASVIIASQSNGKQEK 793
                 579*********9988765.578999*****999988777777.6788899999999999998888776 PP

  == domain 4  score: -2.4 bits;  conditional E-value: 1.1
     DUF5578 219 akpsivepllelLkslhlevqyeaielikelmste 253
                 a    ++pl+++L s ++++q++a   + +l++ +
  KOO21879.1 826 ADAGAIQPLVAMLGSPNSDMQANAACALGTLAEAH 860
                 5567899***************9998888887654 PP

  == domain 5  score: -1.4 bits;  conditional E-value: 0.57
     DUF5578  166 eeaqklleslaegnPkyqkqvyk.....gliallacsspkaqqlalqtlrvvqeivkeak....psivepllelLkslhlevqyeaielikelmste 253 
                  +ea + + s++ +n  +q  + +      li l+  +  +aq +a++tl  +  +++ ++       v pl++lL+s h ++ + +  +i+ l+++ 
  KOO21879.1 1024 REAAHAVLSIVANNATLQAAIVQldaipPLIELIIKAEQQAQAYAARTLFHLAATLEGVEaieaAGGVAPLVHLLSSEHPHLVDVGAVVISRLTTFS 1120
                  5555555556666666665554322222477787778888999999988777666554432223567999999999999998888888888888776 PP

     DUF5578  254 vra 256 
                   +a
  KOO21879.1 1121 AHA 1123
                  655 PP

  == domain 6  score: 6.8 bits;  conditional E-value: 0.0017
     DUF5578  170 klleslaegnPkyqkqvykgliallacsspkaq.qlalqtlrvvqeivkeakpsi.....vepllelLkslhlevqyeaielikelmste..vraal 258 
                  + l++la+g  + q  + k l++ll+ + p +  + a+++l  + +  + a+  +     ++pl++lL s  +e ++ea+  +  l++ +   + a+
  KOO21879.1 1627 DALTHLARGHADNQAAIAKKLVGLLEVDRPDGTlRRAARALWKLADENEGAPVRVvnagaISPLVALLGSGSMEAKSEAVGALTCLATNDpkSQLAI 1723
                  5578888888888888889999999888887642666778877777766665444111116789999999999999999999999998861144567 PP

     DUF5578  259 lkglvalL 266 
                   +glvalL
  KOO21879.1 1724 ATGLVALL 1731
                  78999988 PP

  == domain 7  score: -0.7 bits;  conditional E-value: 0.34
     DUF5578  193 llacsspkaqqlalqtlrvvqeivkeakpsive.....pllelLkslhlevqyeaielikelmst..evraall 259 
                    a +s +aq l +q l  +++  ++  ++iv       l++lL+    e q +a +++ +++++  e+++ + 
  KOO21879.1 1781 ASARTSLRAQELGAQVLLRLSRDDEANAHAIVAhgglrYLVALLSAESEEAQVNAADVLCDVARRstEIQSRVA 1854
                  55556667777777665555544444444444312221466666666667777777777776643225555443 PP

  == domain 8  score: 3.4 bits;  conditional E-value: 0.019
     DUF5578  154 eclakskseetqeeaqklleslaegnPkyqkqvykg.....liallacsspkaqqlalqtlrvvqeivkeakpsivepllelLkslhlevq....ye 241 
                   ++  +  e ++eea + l+ l+ + P  q+   ++     lia+l +   +aq  a+++l ++    ++ ++ i ++l++lL+  + ev     ++
  KOO21879.1 1995 AIIRDAGAEDAKEEAATALWALTASHPPNQTASAEAgaivpLIAMLGAGGTRAQAQAASALASMALGHSTNQSEIASMLVQLLNA-EGEVDeskgTK 2090
                  556666778899999999999999988887765443333339**********************999999999999998888864.34443111134 PP

     DUF5578  242 aielikelm 250 
                  a + i+ l+
  KOO21879.1 2091 AARAISRLA 2099
                  666666665 PP

>> Cnd1  non-SMC mitotic condensation complex subunit 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.8   0.0     0.011        25      21     144 ..     132     286 ..     111     323 .. 0.66
   2 ?   -3.3   0.0       3.6   8.1e+03      38      83 ..     475     525 ..     469     535 .. 0.74
   3 ?    3.9   0.0     0.021        48      38      74 ..     606     646 ..     600     697 .. 0.86
   4 ?    5.0   0.0      0.01        23      44      92 ..     810     865 ..     805     973 .. 0.60
   5 ?    0.7   0.0      0.22   4.8e+02      24      88 ..    1092    1158 ..    1087    1215 .. 0.87
   6 ?   -3.7   0.1       4.8   1.1e+04     122     151 ..    1290    1319 ..    1281    1322 .. 0.81
   7 ?   -3.9   0.0       5.6   1.2e+04      76     126 ..    2049    2098 ..    2024    2108 .. 0.66

  Alignments for each domain:
  == domain 1  score: 4.8 bits;  conditional E-value: 0.011
        Cnd1  21 ylvepLrkrLkDedpyVRktaaivvakL....ilnd.mvkekgflselakll.eDenprVvanalaalteisek.senaiynllpdiisklsdalne.. 110
                 +++ p  + Lk  +   R++ a ++a+L    ++++  +   g ++el+++l + +  +  a a+a+l+ +se  +   +     +++  l++++n+  
  KOO21879.1 132 NVTAPFVRLLKQGNTDAREHIASMIANLsrasFDAEaAFVGAGAVEELLRMLsSAKTCNTAAWAIASLCSCSEHvEAISAAGGIAKLLELLNTSINTts 230
                 456789999999999*************998877763566778*********5566679999***********95433333344445555554444422 PP

        Cnd1 111 ......................csewgqitilefLlsyipkdkqeaeslveklcpr 144
                                       ++  g    l +L+s  p+ + +a + v +lc++
  KOO21879.1 231 qvaaaaavsnlardhpptqtaiAKAGGIGPLLALLASRSPQAQAQAAEAVGRLCAH 286
                 22223333334444444444434444444555555555555555566666666655 PP

  == domain 2  score: -3.3 bits;  conditional E-value: 3.6
        Cnd1  38 RktaaivvakL.....ilndmvkekgflselaklleDenprVvanalaalt 83 
                 Rk aa ++ +L      + +++      sel +ll+ +++  +a al al+
  KOO21879.1 475 RKAAAELLWRLvrendASVEIIAAASSASELVELLKTSDADARAFALWALS 525
                 788888888886443334446777778999999998888888888888775 PP

  == domain 3  score: 3.9 bits;  conditional E-value: 0.021
        Cnd1  38 RktaaivvakL....ilndmvkekgflselaklleDenprV 74 
                 R +aa ++a L     ++d++ e+g +  l  ll+D+n+  
  KOO21879.1 606 RVHAASAIASLarlaANRDTIVESGGITPLVALLNDDNRIA 646
                 666777777777769999******************99755 PP

  == domain 4  score: 5.0 bits;  conditional E-value: 0.01
        Cnd1  44 vvakL.....ilndmvkekgflselaklleDenprVvanalaalteisek..sena 92 
                 + ++L     ++++   + g ++ l  +l  +n+  +ana +al  ++e   +++a
  KOO21879.1 810 AASQLakgnrLNQTALADAGAIQPLVAMLGSPNSDMQANAACALGTLAEAhaDNQA 865
                 55555555666677777778888888888888888888888888887777532222 PP

  == domain 5  score: 0.7 bits;  conditional E-value: 0.22
        Cnd1   24 epLrkrLkDedpyVRktaaivvakL..ilndmvkekgflselaklleDenprVvanalaalteisek 88  
                   pL + L+ e+p+     a+v+++L  +++  v + g ++ l kl++  ++  ++ a +al +i + 
  KOO21879.1 1092 APLVHLLSSEHPHLVDVGAVVISRLttFSAHAVAVAGGIAPLTKLISMGSHAAQQHAASALADIGSV 1158
                  68999999999999999*********999*****************999999999999999998765 PP

  == domain 6  score: -3.7 bits;  conditional E-value: 4.8
        Cnd1  122 fLlsyipkdkqeaeslveklcprlqhansa 151 
                  +++ +++  + e   l++k+ ++ qh  + 
  KOO21879.1 1290 AIAAMVKARATEKAALAQKVEKQQQHRAQH 1319
                  5667778888888999****9999998765 PP

  == domain 7  score: -3.9 bits;  conditional E-value: 5.6
        Cnd1   76 analaalteiseksenaiynllpdiisklsdalnecsewgqitilefLlsy 126 
                  a a +al  ++   +++  ++ + +++ l+ a  e++e + ++  +++++ 
  KOO21879.1 2049 AQAASALASMALGHSTNQSEIASMLVQLLN-AEGEVDESKGTKAARAISRL 2098
                  556666666666655555555555555555.77788888777777776665 PP

>> V-ATPase_H_N  V-ATPase subunit H
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.7   0.0     0.058   1.3e+02     105     207 ..     133     230 ..     113     278 .. 0.60
   2 ?    2.0   0.0     0.046     1e+02     162     208 ..     602     644 ..     451     749 .. 0.64
   3 ?    2.5   0.0     0.032        72     105     199 ..     688     782 ..     660     797 .. 0.65
   4 ?   -0.6   0.0      0.28   6.3e+02     147     202 ..    1000    1060 ..     932    1115 .. 0.66
   5 !    5.3   0.0    0.0045        10     109     206 ..    1905    2004 ..    1893    2128 .. 0.87

  Alignments for each domain:
  == domain 1  score: 1.7 bits;  conditional E-value: 0.058
  V-ATPase_H_N 105 pwkpflkllnrqddfivllalrllakllvqgkkksnklv.esaLnrllqlLssqlssstnevieiavrllqellrtkeyRelfveadgvstlisilr 200
                   +  pf++ll++ +    ++++ ++a+l +++ + +   v   a++ ll++Lss  +   +   ++a+ ++++l + +e+ e++  a g+  l+++l+
    KOO21879.1 133 VTAPFVRLLKQGNTDAREHIASMIANLSRASFDAEAAFVgAGAVEELLRMLSSAKT---C---NTAAWAIASLCSCSEHVEAISAAGGIAKLLELLN 223
                   66777777777777777777777777777777777776677777777777776333...3...4455555555555555555555555555555553 PP

  V-ATPase_H_N 201 stvanst 207
                    +++ ++
    KOO21879.1 224 TSINTTS 230
                   2222222 PP

  == domain 2  score: 2.0 bits;  conditional E-value: 0.046
  V-ATPase_H_N 162 tnevieiavrllqellrtkeyRelfveadgvstlisilrstvanstr 208
                   t+     a+ ++++l+r  + R ++ve+ g+ +l+++l+    +++r
    KOO21879.1 602 TAAARVHAASAIASLARLAANRDTIVESGGITPLVALLN----DDNR 644
                   444445667777777777888888888888888888773....3333 PP

  == domain 3  score: 2.5 bits;  conditional E-value: 0.032
  V-ATPase_H_N 105 pwkpflk.llnrq.ddfivllalrllakllvqgkkksnklv.esaLnrllqlLssqlssstnevieiavrllqellrtkeyRelfveadgvstlisi 198
                   ++  ++  l ++  ++   ++a+  la+l++ ++ +   +v    +  ll+lL+++ s +     e a+ ++++l++++ + + + +a g+++l s+
    KOO21879.1 688 IIHKLVGmLYDKGsEAGGEEQAAAALANLASDSDANRDSIVeAGGIAPLLSLLETSSSTK---AKERAIGAISQLASRRTIQKEIAKAGGIPLLASV 781
                   444444434444445556667777777777777777777665555666777766544443...4477888888888888888888888888888884 PP

  V-ATPase_H_N 199 l 199
                   +
    KOO21879.1 782 I 782
                   4 PP

  == domain 4  score: -0.6 bits;  conditional E-value: 0.28
  V-ATPase_H_N  147 LnrllqlLssqlss......stnevieiavrllqellrtkeyRelfveadgvstlisilrst 202 
                    L+ l+++Ls ++++      ++++  e a   l+ ++ +  +  ++v+ d +++li+++ + 
    KOO21879.1 1000 LPSLIAWLSGSADArwlggnPDAQR-EAAHAVLSIVANNATLQAAIVQLDAIPPLIELIIKA 1060
                    4555555555444445554422222.566666666666666666666666666666644211 PP

  == domain 5  score: 5.3 bits;  conditional E-value: 0.0045
  V-ATPase_H_N  109 flkllnrqddfivllalrllakllvqgkkksnklv.esaLnrllqlLssqlssstnevieiavrllqellrtkeyRelfve.adgvstlisilrs 201 
                    +++ll  +d+  +++a+  la l+v g+  +  ++    ++ l++lL   ++  + +  + a+++l++l+ +    +++v  a g+++l++i+r+
    KOO21879.1 1905 LVQLLCTDDAGAQRQAAVALAALAVGGHSIQGSITrAGGIEPLVRLLDAAAARTQGSTAAQAATALAALVANHPANQAAVAaAGGIEPLVAIIRD 1999
                    67889999**********************999888666677777777766666666669999999999999999999999899*********85 PP

  V-ATPase_H_N  202 tvans 206 
                     +a++
    KOO21879.1 2000 AGAED 2004
                    55544 PP

>> RICTOR_N  Rapamycin-insensitive companion of mTOR, N-term
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.0      0.43   9.7e+02     138     166 ..     621     650 ..     609     664 .. 0.80
   2 ?    2.1   0.0     0.034        77     138     208 ..     722     792 ..     701     846 .. 0.76
   3 !    7.5   0.0   0.00079       1.8     109     179 ..     830     903 ..     812     913 .. 0.81
   4 ?   -0.0   0.0      0.15   3.5e+02     132     184 ..    1113    1165 ..    1088    1176 .. 0.83
   5 ?   -3.9   0.0       2.3   5.3e+03     142     363 ..    1233    1265 ..    1231    1313 .. 0.65
   6 ?   -1.6   0.0      0.47     1e+03     142     176 ..    1386    1420 ..    1382    1440 .. 0.87
   7 ?    0.9   0.0     0.081   1.8e+02     143     187 ..    1560    1604 ..    1556    1652 .. 0.86
   8 ?   -2.2   0.0       0.7   1.6e+03     140     174 ..    1678    1712 ..    1676    1741 .. 0.83
   9 ?   -0.0   0.0      0.15   3.3e+02     241     269 ..    1816    1844 ..    1797    1868 .. 0.79
  10 ?   -1.8   0.0      0.51   1.1e+03     139     173 ..    1980    2015 ..    1948    2022 .. 0.84

  Alignments for each domain:
  == domain 1  score: -1.5 bits;  conditional E-value: 0.43
    RICTOR_N 138 ldpelvveagGlrvllnalld.gsselaes 166
                  +++ +ve+gG+  l+ +l d + + +ae+
  KOO21879.1 621 ANRDTIVESGGITPLVALLNDdNRIAIAEA 650
                 588999***************999999886 PP

  == domain 2  score: 2.1 bits;  conditional E-value: 0.034
    RICTOR_N 138 ldpelvveagGlrvllnalld.gsselaesllvallylLdspetrkylrkgldleillspftdslekekkke 208
                  +++ +veagG+  ll++l   +s +++e  + a+ +l +  ++ k + k   + +l+s++  s +++ k+e
  KOO21879.1 722 ANRDSIVEAGGIAPLLSLLETsSSTKAKERAIGAISQLASRRTIQKEIAKAGGIPLLASVIIAS-QSNGKQE 792
                 578889*************999999******************999999999999999998883.3334333 PP

  == domain 3  score: 7.5 bits;  conditional E-value: 0.00079
    RICTOR_N 109 vvralvavaehedDrl...rricletLaElllldpelvveagGlrvllnalldgsselaesllvallylLdspe 179
                  ++ lva   +++  +   ++ +l tLaE    + + ++++g++  l++++ +g + ++e+++ al  + d ++
  KOO21879.1 830 AIQPLVAMLGSPNSDMqanAACALGTLAEAHADNQAAIARTGAIAPLTSLVREGAPLVKEMCAGALWAVCDDHA 903
                 5677777777555333111346799*****************************************99999875 PP

  == domain 4  score: -0.0 bits;  conditional E-value: 0.15
    RICTOR_N  132 LaElllldpelvveagGlrvllnalldgsselaesllvallylLdspetrkyl 184 
                  +  l+ +  + v+ agG+  l+++++ gs  +++  ++al  + + p+ r  +
  KOO21879.1 1113 ISRLTTFSAHAVAVAGGIAPLTKLISMGSHAAQQHAASALADIGSVPAHRDAI 1165
                  5557777888999***************************9999999999876 PP

  == domain 5  score: -3.9 bits;  conditional E-value: 2.3
    RICTOR_N  142 lvveagGlrvllnalldgsselaesllvallylLdspetrkylrkgldleillspftdslekekkkesneeklqnsakaisslLksWsGlialsmnn 238 
                  l++++gG++ l+ +l                                                                                  
  KOO21879.1 1233 LILACGGIDRLIAMLWA-------------------------------------------------------------------------------- 1249
                  55555555555555444................................................................................ PP

    RICTOR_N  239 frplksLvsaLripslevrkaildllfdllrikppewsesflagrrlttransksqkkqeeneaeesaelkkkeserkrenlvdhylallllvliea 335 
                                                                                                                   
  KOO21879.1    - -------------------------------------------------------------------------------------------------    -
                  ................................................................................................. PP

    RICTOR_N  336 glleaLvevieeesdsslsrkatlLlge 363 
                               +++ l+r+   L++ 
  KOO21879.1 1250 ------------IPNKGLARRMWDLISS 1265
                  ............4444444444433333 PP

  == domain 6  score: -1.6 bits;  conditional E-value: 0.47
    RICTOR_N  142 lvveagGlrvllnalldgsselaesllvallylLd 176 
                   +++agG+  ll+++ +gs+  +e+   a+ +l  
  KOO21879.1 1386 AILAAGGVPPLLRLIREGSAASQEAASRAIWHLCA 1420
                  57899***************999999999999875 PP

  == domain 7  score: 0.9 bits;  conditional E-value: 0.081
    RICTOR_N  143 vveagGlrvllnalldgsselaesllvallylLdspetrkylrkg 187 
                  +++agG+  l+++++ gs+  +e  ++al +l + p++   + k 
  KOO21879.1 1560 IAAAGGIVPLVSLVQSGSQAGKERAASALWHLANDPSSQVAIAKA 1604
                  7899********************************998877665 PP

  == domain 8  score: -2.2 bits;  conditional E-value: 0.7
    RICTOR_N  140 pelvveagGlrvllnalldgsselaesllvallyl 174 
                  p  vv+ag+++ l+ +l  gs+e+++  + al  l
  KOO21879.1 1678 PVRVVNAGAISPLVALLGSGSMEAKSEAVGALTCL 1712
                  56799*********************999988655 PP

  == domain 9  score: -0.0 bits;  conditional E-value: 0.15
    RICTOR_N  241 plksLvsaLripslevrkaildllfdllr 269 
                  +l+ Lv  L+ +s e +  + d+l+d++r
  KOO21879.1 1816 GLRYLVALLSAESEEAQVNAADVLCDVAR 1844
                  78999999999999999999999999986 PP

  == domain 10  score: -1.8 bits;  conditional E-value: 0.51
    RICTOR_N  139 dpelvveagGlrvllnalld.gsselaesllvally 173 
                  + + v++agG++ l+ ++ d g  +++e  + al  
  KOO21879.1 1980 NQAAVAAAGGIEPLVAIIRDaGAEDAKEEAATALWA 2015
                  667899**************9999999988887765 PP

>> V-ATPase_H_C  V-ATPase subunit H
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.3   0.0    0.0023         5      44     114 ..     215     285 ..     203     287 .. 0.91
   2 ?    4.2   0.0      0.02        44      43     112 ..     458     527 ..     446     530 .. 0.82
   3 ?   -4.0   0.0       6.9   1.5e+04      78     109 ..     822     853 ..     805     880 .. 0.62
   4 ?   -3.8   0.0         6   1.4e+04      54      82 ..    1421    1449 ..    1410    1455 .. 0.75
   5 ?   -3.2   0.0       3.9   8.6e+03      44      94 ..    1817    1866 ..    1814    1870 .. 0.68
   6 ?   -3.6   0.0       5.3   1.2e+04      47     103 ..    1947    2007 ..    1944    2015 .. 0.65

  Alignments for each domain:
  == domain 1  score: 7.3 bits;  conditional E-value: 0.0023
  V-ATPase_H_C  44 lkkLiklleeskdktvlavalnDigelvkllpegkkvleklkaKekimellehedeevkyeALkavqkllv 114
                   + kL++ll++s ++t+++ a+  +++l++ +p  ++ ++k ++   +++ll+++ ++ + +A +av +l  
    KOO21879.1 215 IAKLLELLNTSINTTSQVAAAAAVSNLARDHPPTQTAIAKAGGIGPLLALLASRSPQAQAQAAEAVGRLCA 285
                   7799****98889999999999*****************************************99988765 PP

  == domain 2  score: 4.2 bits;  conditional E-value: 0.02
  V-ATPase_H_C  43 llkkLiklleeskdktvlavalnDigelvkllpegkkvleklkaKekimellehedeevkyeALkavqkl 112
                   +   L+ ll  s+  +    a+  + +lv++ + + ++++  +  ++++ell+++d++ +  AL a++  
    KOO21879.1 458 VTTLLVGLLAPSSAVEARKAAAELLWRLVRENDASVEIIAAASSASELVELLKTSDADARAFALWALSLA 527
                   555666777655556667778888899*************************************998765 PP

  == domain 3  score: -4.0 bits;  conditional E-value: 6.9
  V-ATPase_H_C  78 kkvleklkaKekimellehedeevkyeALkav 109
                   ++ l++ +a + ++++l +++++++ +A  a+
    KOO21879.1 822 QTALADAGAIQPLVAMLGSPNSDMQANAACAL 853
                   44555555555555666666666665554443 PP

  == domain 4  score: -3.8 bits;  conditional E-value: 6
  V-ATPase_H_C   54 skdktvlavalnDigelvkllpegkkvle 82  
                    s +++ + va+  ++elv l ++g+   +
    KOO21879.1 1421 SLESQGVLVACGAVEELVALSRNGSPAAQ 1449
                    44577899**********99999887665 PP

  == domain 5  score: -3.2 bits;  conditional E-value: 3.9
  V-ATPase_H_C   44 lkkLiklleeskdktvlavalnDig.elvkllpegkkvleklkaKekimell 94  
                    l+ L++ll  s++++  +v + D+   +++   e ++ ++  +a e +++ll
    KOO21879.1 1817 LRYLVALL--SAESEEAQVNAADVLcDVARRSTEIQSRVAAEGAVEILVKLL 1866
                    57789999..456666778888864156666777777777777777777766 PP

  == domain 6  score: -3.6 bits;  conditional E-value: 5.3
  V-ATPase_H_C   47 Likll...eeskdktvlavalnDigelvkllpegkkvleklkaKekimellehe.deevky 103 
                    L++ll    + ++ ++ a a+  ++ lv ++p  ++ ++  ++ e ++++++++  e+ k 
    KOO21879.1 1947 LVRLLdaaAARTQGSTAAQAATALAALVANHPANQAAVAAAGGIEPLVAIIRDAgAEDAKE 2007
                    5555522223333477888889999999999999999888887777666666553455555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (2221 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       822  (0.0458475); expected 358.6 (0.02)
Passed bias filter:                      348  (0.0194099); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 1.26u 0.31s 00:00:01.57 Elapsed: 00:00:00.53
# Mc/sec: 12583.66
//
Query:       KOO21880.1  [L=119]
Description: hypothetical protein Ctob_005451 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.7e-08   33.5   0.8    3.1e-08   33.3   0.8    1.0  1  TPT       Triose-phosphate Transporter family
      0.002   18.3   5.3     0.0023   18.1   5.3    1.1  1  EamA      EamA-like transporter family
      0.003   16.8   2.8     0.0036   16.6   2.8    1.1  1  PUNUT     Purine nucleobase transmembrane transport
  ------ inclusion threshold ------
      0.093   12.5   5.1       0.11   12.2   0.6    2.3  2  DUF5516   Family of unknown function (DUF5516)
       0.12   12.4   0.8       0.17   11.8   0.1    1.7  2  GNVR      G-rich domain on putative tyrosine kinase
        0.3   11.1   2.3        3.7    7.6   0.2    2.1  2  DUF1726   Domain of unknown function (DUF1726)


Domain annotation for each model (and alignments):
>> TPT  Triose-phosphate Transporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.3   0.8   1.1e-11   3.1e-08     206     289 ..      26     108 ..      13     109 .. 0.87

  Alignments for each domain:
  == domain 1  score: 33.3 bits;  conditional E-value: 1.1e-11
         TPT 206 sllkstkvslkevllllllsgvlfhlynqvaymvLervspvthsvantvKrvvvIvlsvlvfknpvsllnaiGtavaivGvflY 289
                 s+++ + +++ ++l+ll+  g+l +l   +   v++  s +t sv  ++K v+ + +sv++f + +++l+a G  + ++G+ lY
  KOO21880.1  26 STVQPQ-MAFGALLALLVGGGMLAFLMLLCELRVVQLASGLTLSVLGVLKEVLTVGASVILFSDTITTLKAAGLGLCVIGIGLY 108
                 333333.667889999999****************************************************************9 PP

>> EamA  EamA-like transporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.1   5.3   7.8e-07    0.0023      61     134 ..      34     107 ..      10     109 .. 0.89

  Alignments for each domain:
  == domain 1  score: 18.1 bits;  conditional E-value: 7.8e-07
        EamA  61 lkdwllllllgllgtvlafllffyalkktsasnaslitslePvftlilsvlllgekltlkqllgivlillGvll 134
                   ++l+ll+ g +  +l+ l+ +  ++  s  + s++  l  v+t+  sv+l+  ++t ++ +g++l+++G+ l
  KOO21880.1  34 FGALLALLVGGGMLAFLMLLCELRVVQLASGLTLSVLGVLKEVLTVGASVILFSDTITTLKAAGLGLCVIGIGL 107
                 45688889999999999999999999999999***************************************976 PP

>> PUNUT  Purine nucleobase transmembrane transport
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   2.8   1.2e-06    0.0036     245     312 ..      41     108 ..      31     114 .. 0.90

  Alignments for each domain:
  == domain 1  score: 16.6 bits;  conditional E-value: 1.2e-06
       PUNUT 245 lvgsavswQvlavGavgLvflvSslfsnvistvllpvvsvlavilfrdkfsavkgvalllailgfasY 312
                 lvg  +   ++++  + +v l+S+l+  v+ ++   ++  + vilf d ++  k+  l l+++g+  Y
  KOO21880.1  41 LVGGGMLAFLMLLCELRVVQLASGLTLSVLGVLKEVLTVGASVILFSDTITTLKAAGLGLCVIGIGLY 108
                 6666666678899999************************************************9988 PP

>> DUF5516  Family of unknown function (DUF5516)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.0   0.3      0.06   1.8e+02       8      16 ..      64      72 ..      59      73 .. 0.89
   2 ?   12.2   0.6   3.7e-05      0.11       7      18 ..      96     107 ..      91     109 .. 0.86

  Alignments for each domain:
  == domain 1  score: 2.0 bits;  conditional E-value: 0.06
     DUF5516  8 gLGlgVLGV 16
                gL l VLGV
  KOO21880.1 64 GLTLSVLGV 72
                899*****9 PP

  == domain 2  score: 12.2 bits;  conditional E-value: 3.7e-05
     DUF5516   7 igLGlgVLGVgL 18 
                  gLGl+V+G+gL
  KOO21880.1  96 AGLGLCVIGIGL 107
                 69*********9 PP

>> GNVR  G-rich domain on putative tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.1   5.6e-05      0.17      44      79 ..      18      54 ..       6      57 .. 0.84
   2 ?   -2.6   0.1       1.9   5.5e+03      65      78 ..      60      73 ..      58      75 .. 0.71

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 5.6e-05
        GNVR 44 vDeavvpekpvkPkkalivvlalllG.lllgvalvll 79
                 D avv+e+ v+P++a+  +lall+G ++l++++ l+
  KOO21880.1 18 MDAAVVDESTVQPQMAFGALLALLVGgGMLAFLMLLC 54
                599*******************998626888887775 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 1.9
        GNVR 65 alllGlllgvalvl 78
                 l  Gl l+v+ vl
  KOO21880.1 60 QLASGLTLSVLGVL 73
                45678888888776 PP

>> DUF1726  Domain of unknown function (DUF1726)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.6   0.2     0.021        62      12      45 ..      18      51 ..      16      56 .. 0.80
   2 ?    7.6   0.2    0.0012       3.7      14      52 ..      56      94 ..      53      98 .. 0.92

  Alignments for each domain:
  == domain 1  score: 3.6 bits;  conditional E-value: 0.021
     DUF1726 12 ydllvldlfealtPnalgrlvetVrGGGliilll 45
                +d++v+d        a+g+l  +  GGG++ +l+
  KOO21880.1 18 MDAAVVDESTVQPQMAFGALLALLVGGGMLAFLM 51
                67888887665555689***********998886 PP

  == domain 2  score: 7.6 bits;  conditional E-value: 0.0012
     DUF1726 14 llvldlfealtPnalgrlvetVrGGGliilllppleelk 52
                l v++l + lt  +lg l e+   G+ +il+ +++++lk
  KOO21880.1 56 LRVVQLASGLTLSVLGVLKEVLTVGASVILFSDTITTLK 94
                5699******************************99987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (119 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       550  (0.0306766); expected 358.6 (0.02)
Passed bias filter:                      279  (0.0155614); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.38u 0.25s 00:00:00.63 Elapsed: 00:00:00.41
# Mc/sec: 872.77
//
Query:       KOO21881.1  [L=897]
Description: beta-glucan synthesis-associated [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    7.1e-50  165.6  55.5      2e-05   24.5   0.1   16.1 15  Arm              Armadillo/beta-catenin-like repeat
    4.1e-07   29.7   5.9        1.2    8.6   0.1    4.8  4  DUF5578          Family of unknown function (DUF5578)
      3e-05   23.5   0.0      0.016   14.5   0.0    3.5  2  V-ATPase_H_N     V-ATPase subunit H
    4.9e-05   23.3   0.1       0.51   10.4   0.0    3.8  5  Atx10homo_assoc  Spinocerebellar ataxia type 10 protein domai
      0.006   16.1   0.0        3.1    7.2   0.0    4.2  4  Arm_2            Armadillo-like
  ------ inclusion threshold ------
      0.014   15.5   0.0        1.1    9.3   0.0    3.5  4  Cnd1             non-SMC mitotic condensation complex subunit
       0.18   12.2  31.2        0.4   11.1   0.0    8.8  8  HEAT             HEAT repeat


Domain annotation for each model (and alignments):
>> Arm  Armadillo/beta-catenin-like repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.0   0.1      0.09   2.3e+02      16      41 .]      25      50 ..      20      50 .. 0.90
   2 !    8.0   0.0    0.0012         3      11      36 ..      64      89 ..      56      94 .. 0.89
   3 !   12.8   0.0   3.7e-05     0.096       3      40 ..     166     203 ..     164     204 .. 0.90
   4 !   17.2   0.2   1.5e-06    0.0038       6      37 ..     256     290 ..     252     293 .. 0.86
   5 !   18.7   0.1   5.2e-07    0.0013       2      41 .]     297     337 ..     296     337 .. 0.95
   6 !   18.5   0.2     6e-07    0.0015       2      37 ..     339     374 ..     338     377 .. 0.92
   7 !   24.1   0.2     1e-08   2.6e-05       2      37 ..     381     416 ..     380     420 .. 0.92
   8 ?    1.7   0.1      0.12     3e+02      13      33 ..     429     450 ..     426     458 .. 0.70
   9 !   16.8   0.2   2.1e-06    0.0053       2      40 ..     461     501 ..     460     502 .. 0.88
  10 !   19.2   0.1   3.4e-07   0.00088       5      41 .]     507     543 ..     505     543 .. 0.95
  11 ?    4.8   0.6     0.012        30       9      39 ..     552     582 ..     549     584 .. 0.86
  12 !   13.7   0.2   1.9e-05      0.05       5      41 .]     589     626 ..     586     626 .. 0.92
  13 !   24.5   0.1   7.7e-09     2e-05       5      40 ..     635     670 ..     631     671 .. 0.92
  14 !    9.5   1.4   0.00039      0.99      10      40 ..     682     711 ..     674     712 .. 0.74
  15 ?    1.9   0.0     0.096   2.5e+02       3      16 ..     715     728 ..     713     729 .. 0.84

  Alignments for each domain:
  == domain 1  score: 2.0 bits;  conditional E-value: 0.09
                HHHHHTTTSSHHHHHHHHHHHHHHTT CS
         Arm 16 pLvrLLssedeevqeeAawALsNLaa 41
                +L++LL  + +ev++ A ++L+ +aa
  KOO21881.1 25 QLISLLGAPEPEVRQCASSTLREMAA 50
                79*************99999998875 PP

  == domain 2  score: 8.0 bits;  conditional E-value: 0.0012
                TTHHHHHHHHTTTSSHHHHHHHHHHH CS
         Arm 11 aGavppLvrLLssedeevqeeAawAL 36
                 G++++ v+LL+ +++e qe  +w L
  KOO21881.1 64 PGGIERIVALLREGSVEAQEYTLWML 89
                69**********************66 PP

  == domain 3  score: 12.8 bits;  conditional E-value: 3.7e-05
                 HHHHHHHHTTHHHHHHHHTTTSSHHHHHHHHHHHHHHT CS
         Arm   3 enkdavieaGavppLvrLLssedeevqeeAawALsNLa 40 
                 +n  ++  +G+++p vrLL+++ ++ ++ +a+AL+ La
  KOO21881.1 166 RNSLEISASGGIRPMVRLLRDGTDGAKRHSATALTQLA 203
                 566778889**************************997 PP

  == domain 4  score: 17.2 bits;  conditional E-value: 1.5e-06
                 HHHH.HTTHHHHHHHHTT..TSSHHHHHHHHHHHH CS
         Arm   6 davi.eaGavppLvrLLs..sedeevqeeAawALs 37 
                 +++i e Ga+ppLv++L+   +++e q+ Aa+AL+
  KOO21881.1 256 QTLIaEEGAIPPLVAMLQaaEPSDEAQRWAASALA 290
                 45555***************************996 PP

  == domain 5  score: 18.7 bits;  conditional E-value: 5.2e-07
                 HHHHHHHHHTTHHHHHHHHTT.TSSHHHHHHHHHHHHHHTT CS
         Arm   2 senkdavieaGavppLvrLLs.sedeevqeeAawALsNLaa 41 
                 + n +++ e Ga+ +Lv+LL+  ++    e+A++ L++Laa
  KOO21881.1 297 PVNQITIAEEGAIGALVDLLKcPTSGAAHENATRVLWHLAA 337
                 7899***********************************96 PP

  == domain 6  score: 18.5 bits;  conditional E-value: 6e-07
                 HHHHHHHHHTTHHHHHHHHTTTSSHHHHHHHHHHHH CS
         Arm   2 senkdavieaGavppLvrLLssedeevqeeAawALs 37 
                  +n   v +aG++ pLv++Ls e +++qe Aa+ALs
  KOO21881.1 339 TDNQLSVARAGGLAPLVAMLSAEAPKTQEWAAAALS 374
                 5788899****************************9 PP

  == domain 7  score: 24.1 bits;  conditional E-value: 1e-08
                 HHHHHHHHHTTHHHHHHHHTTTSSHHHHHHHHHHHH CS
         Arm   2 senkdavieaGavppLvrLLssedeevqeeAawALs 37 
                  en  a+ +aGa+p+Lv+L+ s+++e+q  A +AL 
  KOO21881.1 381 AENQVAIARAGAIPRLVSLIGSPSDETQLYAQAALV 416
                 58999***************************9995 PP

  == domain 8  score: 1.7 bits;  conditional E-value: 0.12
                 HHHHHHHHTT.TSSHHHHHHHH CS
         Arm  13 avppLvrLLs.sedeevqeeAa 33 
                 +v+pLv+LL+     + q  Aa
  KOO21881.1 429 VVQPLVELLDeYRLATAQMKAA 450
                 79*******9555555555555 PP

  == domain 9  score: 16.8 bits;  conditional E-value: 2.1e-06
                 HHHHHHHHHTTHHHHHHHHTT..TSSHHHHHHHHHHHHHHT CS
         Arm   2 senkdavieaGavppLvrLLs..sedeevqeeAawALsNLa 40 
                   n+ a+ +aGa+ pLvrLL   +   + q  Aa++L+ La
  KOO21881.1 461 TANRTAIAQAGAIAPLVRLLGdgTNANKSQISAAATLADLA 501
                 57999*****************9999999999999988777 PP

  == domain 10  score: 19.2 bits;  conditional E-value: 3.4e-07
                 HHHHHHTTHHHHHHHHTTTSSHHHHHHHHHHHHHHTT CS
         Arm   5 kdavieaGavppLvrLLssedeevqeeAawALsNLaa 41 
                 + a+ +aG+v pLv++L+  + e q  Aa+AL +L++
  KOO21881.1 507 RAAIASAGGVGPLVEMLRASNMEAQAKAAGALLHLSS 543
                 68999*****************************996 PP

  == domain 11  score: 4.8 bits;  conditional E-value: 0.012
                 HHTTHHHHHHHHTTTSSHHHHHHHHHHHHHH CS
         Arm   9 ieaGavppLvrLLssedeevqeeAawALsNL 39 
                 +e +++  Lv+LL+se       Aa+AL+  
  KOO21881.1 552 VERNGIALLVALLDSERLCAANHAAGALWQV 582
                 66699***********999999999999965 PP

  == domain 12  score: 13.7 bits;  conditional E-value: 1.9e-05
                 HHHHHHTTHHHHHHHHTT.TSSHHHHHHHHHHHHHHTT CS
         Arm   5 kdavieaGavppLvrLLs.sedeevqeeAawALsNLaa 41 
                 k a+i+aG++  Lv+LL  +++ e +e++a+ L+ La+
  KOO21881.1 589 KGAIIKAGGLTKLVALLLrTDSAEAKEPIAALLADLAR 626
                 569***************************99988875 PP

  == domain 13  score: 24.5 bits;  conditional E-value: 7.7e-09
                 HHHHHHTTHHHHHHHHTTTSSHHHHHHHHHHHHHHT CS
         Arm   5 kdavieaGavppLvrLLssedeevqeeAawALsNLa 40 
                 k +++ aG++ pLv+LL+  +++ q+ Aa+AL+ L+
  KOO21881.1 635 KGTLVAAGGIAPLVALLEASSVDAQKHAACALWGLT 670
                 567999***************************987 PP

  == domain 14  score: 9.5 bits;  conditional E-value: 0.00039
                 HTTHHHHHHHHTTTSSHHHHHHHHHHHHHHT CS
         Arm  10 eaGavppLvrLLssedeevqeeAawALsNLa 40 
                  aGavp+Lv+LL     e q  Aa+AL+NLa
  KOO21881.1 682 AAGAVPRLVSLLG-NESEAQGFAAAALCNLA 711
                 59***********.55566666666777765 PP

  == domain 15  score: 1.9 bits;  conditional E-value: 0.096
                 HHHHHHHHTTHHHH CS
         Arm   3 enkdavieaGavpp 16 
                 + ++++++aGav+ 
  KOO21881.1 715 HARQQLVDAGAVKS 728
                 779*********86 PP

>> DUF5578  Family of unknown function (DUF5578)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.6   0.1   0.00045       1.2     170     249 ..       6      92 ..       2     106 .. 0.75
   2 !    6.0   0.0    0.0028       7.1     101     222 ..     261     386 ..     255     391 .. 0.83
   3 !    8.4   0.4    0.0005       1.3     190     253 ..     396     460 ..     392     480 .. 0.84
   4 !    5.4   0.2    0.0041        10      75     211 ..     527     668 ..     519     724 .. 0.72

  Alignments for each domain:
  == domain 1  score: 8.6 bits;  conditional E-value: 0.00045
     DUF5578 170 klleslaegnPkyqkqvykgliallacsspkaqqlalqtlrvvq......eivkeak.psivepllelLkslhlevqyeaielikel 249
                 + l ++a   P+ + qv  +li+ll +  p+ +q a +tlr +       ++v  a+ p  +e++++lL++  +e q  ++ ++  +
  KOO21881.1   6 AALAQIALRSPQVRIQVTAQLISLLGAPEPEVRQCASSTLREMAaegsaeSQVTVATmPGGIERIVALLREGSVEAQEYTLWMLAVM 92 
                 5578888899******************************98751111112333333367799999999999999988777666555 PP

  == domain 2  score: 6.0 bits;  conditional E-value: 0.0028
     DUF5578 101 EiGGvltlleilglkqlkeedkaealkllqlvanaGrkyKEliCEsygvravaeclakskseetqeeaqklleslaegnPk.yqkqv...ykglialla 195
                 E G +  l+ +l+  + ++e +++a   l  +a+     + +i E   + a+ ++l   +s +++e+a ++l++la    + ++         l+a+l+
  KOO21881.1 261 EEGAIPPLVAMLQAAEPSDEAQRWAASALAALAQDHPVNQITIAEEGAIGALVDLLKCPTSGAAHENATRVLWHLAADTDNqLSVARaggLAPLVAMLS 359
                 78888999999999999999999*******999999999999*******************************9987544303333212245689**** PP

     DUF5578 196 csspkaqqlalqtlrvvqeivkeakps 222
                 +++pk+q  a+ +l  ++  + e + +
  KOO21881.1 360 AEAPKTQEWAAAALSALSLDCAENQVA 386
                 ***********9999988777666655 PP

  == domain 3  score: 8.4 bits;  conditional E-value: 0.0005
     DUF5578 190 liallacsspkaqqlalqtlrvvqeivkeakpsivepllelLkslhle.vqyeaielikelmste 253
                 l++l+ + s ++q +a  +l ++ ++++++++++v+pl+elL +  l   q++a e ++ l+++ 
  KOO21881.1 396 LVSLIGSPSDETQLYAQAALVLMASSCPQTRCAVVQPLVELLDEYRLAtAQMKAAETLSMLAARS 460
                 788888999999999999************************99987526889999999888654 PP

  == domain 4  score: 5.4 bits;  conditional E-value: 0.0041
     DUF5578  75 llekqlkaigiflsaasgkrylieFlEiGGvltlleilglkqlkeedkaealkllqlvanaGrkyKEliCEsygvravaeclakskseetqeeaqklle 173
                  +e q ka g  l  +s  +  +  +E  G+  l+ +l  ++l  +++a     l  va++    K  i  + g++++  +l ++ s+e++e + +ll 
  KOO21881.1 527 NMEAQAKAAGALLHLSSLASAQTSIVERNGIALLVALLDSERLCAANHAA--GALWQVASTA-AAKGAIIKAGGLTKLVALLLRTDSAEAKEPIAALLA 622
                 57788888888899999999999999**************9998776543..3344444433.3489999***************************** PP

     DUF5578 174 slaegnPkyq....kqvykg....liallacsspkaqqlalqtlrv 211
                  la+   k      + v  g    l+all++ss  aq+ a+ +l  
  KOO21881.1 623 DLARTGHKGDatkgTLVAAGgiapLVALLEASSVDAQKHAACALWG 668
                 9987654433000033332223336777777777777776666655 PP

>> V-ATPase_H_N  V-ATPase subunit H
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.5   0.0     0.028        71     121     201 ..     238     323 ..     222     364 .. 0.81
   2 !   14.5   0.0   6.2e-06     0.016     101     201 ..     424     530 ..     404     784 .. 0.89

  Alignments for each domain:
  == domain 1  score: 2.5 bits;  conditional E-value: 0.028
  V-ATPase_H_N 121 vllalrllakllvqgkkksnklv.esaLnrllqlLssqlssstnevieiavrllqellrtkeyRelfve.adgvstlisilr.....s 201
                   ++la++ la ++  ++++++ +  e a++ l+++L+  + s+  e +  a+ +l++l++   + ++ +  +  ++ l+++l+     +
    KOO21881.1 238 PELAAQALACIANRNADTQTLIAeEGAIPPLVAMLQAAEPSD--EAQRWAASALAALAQDHPVNQITIAeEGAIGALVDLLKcptsgA 323
                   6788999999999888888887778899*******9855554..5689***************9999986778999999997555442 PP

  == domain 2  score: 14.5 bits;  conditional E-value: 6.2e-06
  V-ATPase_H_N 101 eeqd.pwkpflkllnrq.ddfivllalrllakllvqgkkksnklv.esaLnrllqlLssqlssstnevieiavrllqellrtkeyRelfveadgvst 194
                   + ++ +++p+++ll++   +  +++a+  l  l++ +  + + +    a+  l++lL + +++++  ++ +a+  l+ l+r  + R ++ +a gv++
    KOO21881.1 424 QTRCaVVQPLVELLDEYrLATAQMKAAETLSMLAARSTANRTAIAqAGAIAPLVRLLGDGTNANK--SQISAAATLADLARAASDRAAIASAGGVGP 518
                   33336999****99998567778889999988888888888887788999*********999955..5779************************** PP

  V-ATPase_H_N 195 lisilr.....s 201
                   l+++lr     +
    KOO21881.1 519 LVEMLRasnmeA 530
                   *****6443330 PP

>> Atx10homo_assoc  Spinocerebellar ataxia type 10 protein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.0       2.3   5.9e+03      42      70 ..      34      63 ..      32      72 .. 0.80
   2 !   10.4   0.0    0.0002      0.51       8      69 ..     244     305 ..     240     315 .. 0.92
   3 !    7.9   0.0    0.0012       3.1      18      69 ..     340     389 ..     332     393 .. 0.82
   4 ?   -3.4   0.0         4     1e+04       8      30 ..     452     474 ..     447     480 .. 0.65
   5 ?   -3.6   0.0       4.7   1.2e+04      49      68 ..     703     722 ..     699     729 .. 0.83

  Alignments for each domain:
  == domain 1  score: -2.6 bits;  conditional E-value: 2.3
  Atx10homo_assoc 42 nPfirewailairnLl.egneenqelvaeL 70
                     +P +r+ a  ++r +  eg++e+q  va++
       KOO21881.1 34 EPEVRQCASSTLREMAaEGSAESQVTVATM 63
                     577888999999988537888999888876 PP

  == domain 2  score: 10.4 bits;  conditional E-value: 0.0002
  Atx10homo_assoc   8 llgnlvyknkevqdkvreldgleliLsqcniDdnnPfirewailairnLlegneenqelvae 69 
                       l+ ++ +n ++q  + e+++++ +    +  +  +  + wa  a+  L ++ + nq  +ae
       KOO21881.1 244 ALACIANRNADTQTLIAEEGAIPPLVAMLQAAEPSDEAQRWAASALAALAQDHPVNQITIAE 305
                      68889999*************************************************99986 PP

  == domain 3  score: 7.9 bits;  conditional E-value: 0.0012
  Atx10homo_assoc  18 evqdkvreldgleliLsqcniDdnnPfirewailairnLlegneenqelvae 69 
                      ++q  v + +gl+ +       ++ P  +ewa  a+  L  + +enq  +a+
       KOO21881.1 340 DNQLSVARAGGLAPLVAML--SAEAPKTQEWAAAALSALSLDCAENQVAIAR 389
                      6677777777777777654..56789*********************99986 PP

  == domain 4  score: -3.4 bits;  conditional E-value: 4
  Atx10homo_assoc   8 llgnlvyknkevqdkvreldgle 30 
                       l++l+ ++++++  + + ++++
       KOO21881.1 452 TLSMLAARSTANRTAIAQAGAIA 474
                      56666666666666666666665 PP

  == domain 5  score: -3.6 bits;  conditional E-value: 4.7
  Atx10homo_assoc  49 ailairnLlegneenqelva 68 
                      a  a+ nL e+ ++ q+lv 
       KOO21881.1 703 AAAALCNLAEDAHARQQLVD 722
                      77889999999999999986 PP

>> Arm_2  Armadillo-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.3   0.0      0.24   6.1e+02     136     163 ..      67      94 ..      61     121 .. 0.79
   2 !    7.2   0.0    0.0012       3.1      15      88 ..     310     384 ..     253     400 .. 0.91
   3 ?    1.4   0.0     0.073   1.9e+02      17      90 ..     476     550 ..     461     554 .. 0.77
   4 ?    0.8   0.0       0.1   2.7e+02     157     181 ..     706     730 ..     550     755 .. 0.75

  Alignments for each domain:
  == domain 1  score: -0.3 bits;  conditional E-value: 0.24
       Arm_2 136 isellsLLskGnekikvqvLkvllnlse 163
                 i+ ++ LL +G+++ + ++L +l  +++
  KOO21881.1  67 IERIVALLREGSVEAQEYTLWMLAVMTD 94 
                 677899**************99988865 PP

  == domain 2  score: 7.2 bits;  conditional E-value: 0.0012
       Arm_2  15 ekllalLkssedpliqeialltlgnsaaysvnqdiirdlggitiianllsksnaevkekalnalnnlsen.venq 88 
                   l++lLk  +  + +e a+ +l   aa + nq  +   gg++ + ++ls ++++ +e a  al +ls   +enq
  KOO21881.1 310 GALVDLLKCPTSGAAHENATRVLWHLAADTDNQLSVARAGGLAPLVAMLSAEAPKTQEWAAAALSALSLDcAENQ 384
                 5799*************************************999999*****************99996514554 PP

  == domain 3  score: 1.4 bits;  conditional E-value: 0.073
       Arm_2  17 llalLkssedpliqei.alltlgnsaaysvnqdiirdlggitiianllsksnaevkekalnalnnlsenvenqkk 90 
                 l+ lL   ++   ++i a  tl+  a  +  ++ i + gg++ + ++l  sn e + ka  al  ls+ +  q++
  KOO21881.1 476 LVRLLGDGTNANKSQIsAAATLADLARAASDRAAIASAGGVGPLVEMLRASNMEAQAKAAGALLHLSSLASAQTS 550
                 6666655555544443256677778888889999*********9***************9999999987777665 PP

  == domain 4  score: 0.8 bits;  conditional E-value: 0.1
       Arm_2 157 vllnlseNpamtrellsakvlssll 181
                  l nl+e  ++ ++l+ a + +sl+
  KOO21881.1 706 ALCNLAEDAHARQQLVDAGAVKSLQ 730
                 3556666666666666666666655 PP

>> Cnd1  non-SMC mitotic condensation complex subunit 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3   0.0   0.00041       1.1      41     139 ..       4     103 ..       2     116 .. 0.83
   2 ?    0.9   0.0      0.16   4.1e+02      40     124 ..     327     416 ..     323     443 .. 0.74
   3 ?   -2.4   0.0       1.7   4.3e+03      54      89 ..     510     545 ..     473     576 .. 0.57
   4 ?   -1.8   0.0       1.1   2.9e+03      63     103 ..     707     750 ..     658     761 .. 0.65

  Alignments for each domain:
  == domain 1  score: 9.3 bits;  conditional E-value: 0.00041
        Cnd1  41 aaivvakLilndmvkekgflselaklleDenprVvanalaalteisek...senaiynllpdiisklsdalnecsewgqitilefLlsyipkdkqeaes 136
                 aa ++a++ l+      ++ ++l +ll  ++p+V++ a + l e++ +   +++ ++  +p  i ++++ l e s ++q + l +L+ +++  ++   s
  KOO21881.1   4 AAAALAQIALRSPQVRIQVTAQLISLLGAPEPEVRQCASSTLREMAAEgsaESQVTVATMPGGIERIVALLREGSVEAQEYTLWMLAVMTDAASK--SS 100
                 6666777766666666677899*************************9765557889999*********9*************999999888877..66 PP

        Cnd1 137 lve 139
                 ++ 
  KOO21881.1 101 IAH 103
                 655 PP

  == domain 2  score: 0.9 bits;  conditional E-value: 0.16
        Cnd1  40 taaivvakL...ilndm.vkekgflselaklleDenprVvanalaalteisek.senaiynllpdiisklsdalnecsewgqitilefLl 124
                 +a  v+ +L    +n++ v   g l+ l  +l+ e p+ ++ a aal+ +s   +en++       i +l++ + + s ++q +   +L+
  KOO21881.1 327 NATRVLWHLaadTDNQLsVARAGGLAPLVAMLSAEAPKTQEWAAAALSALSLDcAENQVAIARAGAIPRLVSLIGSPSDETQLYAQAALV 416
                 566667777765555542667779999999999999999999999999999987667776666777777777777777777776665555 PP

  == domain 3  score: -2.4 bits;  conditional E-value: 1.7
        Cnd1  54 vkekgflselaklleDenprVvanalaalteiseks 89 
                 + + g +  l ++l+ +n + +a a  al  +s+ +
  KOO21881.1 510 IASAGGVGPLVEMLRASNMEAQAKAAGALLHLSSLA 545
                 555555555555555555555555555555444442 PP

  == domain 4  score: -1.8 bits;  conditional E-value: 1.1
        Cnd1  63 laklleDen...prVvanalaalteiseksenaiynllpdiisk 103
                 l +l eD +   + V a a+ +l+eis+  ++ + ++  +++++
  KOO21881.1 707 LCNLAEDAHarqQLVDAGAVKSLQEISKGPQTWLRTQAVNLLNQ 750
                 44444444311155777788888888877555555555555544 PP

>> HEAT  HEAT repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   2.1         6   1.5e+04      19      28 ..       3      12 ..       2      13 .. 0.90
   2 ?   11.1   0.0   0.00015       0.4       5      28 ..      26      49 ..      23      51 .. 0.92
   3 ?    6.2   0.2    0.0059        15       2      29 ..     265     294 ..     264     296 .. 0.92
   4 ?    7.5   0.4    0.0022       5.6       4      28 ..     353     377 ..     351     380 .. 0.89
   5 ?    1.8   0.1      0.15   3.8e+02       2      31 .]     393     422 ..     392     431 .. 0.88
   6 ?   -1.6   0.1       1.8   4.7e+03       5      28 ..     476     501 ..     473     503 .. 0.67
   7 ?    2.1   0.1      0.12     3e+02       4      29 ..     518     543 ..     516     545 .. 0.89
   8 ?   -0.3   0.1      0.69   1.8e+03       3      29 ..     687     712 ..     685     714 .. 0.69

  Alignments for each domain:
  == domain 1  score: -3.2 bits;  conditional E-value: 6
                HHHHHHHHHH CS
        HEAT 19 aAakaLgala 28
                aAa aL+++a
  KOO21881.1  3 AAAAALAQIA 12
                89******97 PP

  == domain 2  score: 11.1 bits;  conditional E-value: 0.00015
                HHHHHT-SSHHHHHHHHHHHHHHH CS
        HEAT  5 llkllsDpspeVReaAakaLgala 28
                l++ll  p+peVR+ A  +L ++a
  KOO21881.1 26 LISLLGAPEPEVRQCASSTLREMA 49
                8999****************9997 PP

  == domain 3  score: 6.2 bits;  conditional E-value: 0.0059
                 HHHHHHHHT-..SSHHHHHHHHHHHHHHHH CS
        HEAT   2 lPlllkllsD..pspeVReaAakaLgalae 29 
                 +P+l+ +l+   ps e  + Aa aL+ala+
  KOO21881.1 265 IPPLVAMLQAaePSDEAQRWAASALAALAQ 294
                 799*****999*****************98 PP

  == domain 4  score: 7.5 bits;  conditional E-value: 0.0022
                 HHHHHHT-SSHHHHHHHHHHHHHHH CS
        HEAT   4 lllkllsDpspeVReaAakaLgala 28 
                 +l+ +ls ++p+  e Aa aL al+
  KOO21881.1 353 PLVAMLSAEAPKTQEWAAAALSALS 377
                 58999*****************997 PP

  == domain 5  score: 1.8 bits;  conditional E-value: 0.15
                 HHHHHHHHT-SSHHHHHHHHHHHHHHHHCS CS
        HEAT   2 lPlllkllsDpspeVReaAakaLgalaevl 31 
                 +P l++l+ +ps e    A  aL+ +a+ +
  KOO21881.1 393 IPRLVSLIGSPSDETQLYAQAALVLMASSC 422
                 799999999999999999999999998876 PP

  == domain 6  score: -1.6 bits;  conditional E-value: 1.8
                 HHHHHT-..SSHHHHHHHHHHHHHHH CS
        HEAT   5 llkllsD..pspeVReaAakaLgala 28 
                 l++ll D  ++ +   +Aa +L++la
  KOO21881.1 476 LVRLLGDgtNANKSQISAAATLADLA 501
                 56666666333344778999999998 PP

  == domain 7  score: 2.1 bits;  conditional E-value: 0.12
                 HHHHHHT-SSHHHHHHHHHHHHHHHH CS
        HEAT   4 lllkllsDpspeVReaAakaLgalae 29 
                 +l+++l+ +++e  + Aa aL +l++
  KOO21881.1 518 PLVEMLRASNMEAQAKAAGALLHLSS 543
                 589******************98876 PP

  == domain 8  score: -0.3 bits;  conditional E-value: 0.69
                 HHHHHHHT-SSHHHHHHHHHHHHHHHH CS
        HEAT   3 PlllkllsDpspeVReaAakaLgalae 29 
                 P l++ll  +s      Aa aL++lae
  KOO21881.1 687 PRLVSLLGNESEA-QGFAAAALCNLAE 712
                 6666666666666.5678888888887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (897 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       643  (0.0358637); expected 358.6 (0.02)
Passed bias filter:                      290  (0.0161749); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.73u 0.28s 00:00:01.01 Elapsed: 00:00:00.47
# Mc/sec: 5781.54
//
Query:       KOO21882.1  [L=121]
Description: hypothetical protein Ctob_005458 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    0.00099   19.0   0.0     0.0028   17.5   0.0    1.8  2  TOBE_3    TOBE-like domain
  ------ inclusion threshold ------
      0.023   14.8   0.0       0.57   10.4   0.0    2.1  2  CDC48_N   Cell division protein 48 (CDC48), N-terminal domain


Domain annotation for each model (and alignments):
>> TOBE_3  TOBE-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5   0.0   3.1e-07    0.0028      37      58 ..      37      58 ..      36      60 .. 0.94
   2 ?   -2.9   0.0      0.76   6.8e+03      39      52 ..      89     102 ..      87     103 .. 0.68

  Alignments for each domain:
  == domain 1  score: 17.5 bits;  conditional E-value: 3.1e-07
      TOBE_3 37 velprdrfeelglaeGetvylr 58
                + lp ++fe+lgl++G++v++r
  KOO21882.1 37 ITLPSSEFERLGLQPGSRVRVR 58
                689*****************98 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 0.76
      TOBE_3  39 lprdrfeelglaeG 52 
                 l+ + ++ l+l++G
  KOO21882.1  89 LTVADMRMLKLRVG 102
                 66677788888876 PP

>> CDC48_N  Cell division protein 48 (CDC48), N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.0   6.4e-05      0.57       7      55 ..      30      73 ..      24      80 .. 0.81
   2 ?    2.8   0.0     0.015   1.4e+02      17      38 ..      87     108 ..      76     118 .. 0.84

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 6.4e-05
                CSS-CSSTTEEEE-HHHHHHHTS-TTSEEEEECCCCEEEEEEEBSTTST CS
     CDC48_N  7 apqedvgrgivridpedmeelglepgdvveiegkrkTvaivwpaepede 55
                  +   g   + + ++ +e+lgl+pg  v++++ +   a  w++ep++ 
  KOO21882.1 30 PTE---GGTLITLPSSEFERLGLQPGSRVRVRKMK--PAALWSSEPDQA 73
                555...7888999*******************955..5999**999965 PP

  == domain 2  score: 2.8 bits;  conditional E-value: 0.015
                 EEE-HHHHHHHTS-TTSEEEEE CS
     CDC48_N  17 vridpedmeelglepgdvveie 38 
                 vr+  +dm+ l+l+ g    + 
  KOO21882.1  87 VRLTVADMRMLKLRVGHLFAVN 108
                 89************99988776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (121 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       225  (0.0125495); expected 358.6 (0.02)
Passed bias filter:                      202  (0.0112667); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.36u 0.27s 00:00:00.63 Elapsed: 00:00:00.41
# Mc/sec: 882.53
//
Query:       KOO21883.1  [L=825]
Description: hypothetical protein Ctob_000266 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
  ------ inclusion threshold ------
      0.033   14.4   0.0       0.12   12.5   0.0    2.0  1  Response_reg  Response regulator receiver domain
        0.1   12.5  43.3        0.3   11.0   6.5    4.2  4  CortBP2       Cortactin-binding protein-2
       0.48    8.9   4.6        4.5    5.7   0.1    3.0  3  Cytochrom_D1  Cytochrome D1 heme domain
        2.3    9.1  25.8         18    6.2   1.0    5.2  4  DUF5611       Domain of unknown function (DUF5611)
          7    7.3   7.2         96    3.6   0.1    4.6  4  Csd3_N        Csd3 N-terminal


Domain annotation for each model (and alignments):
>> Response_reg  Response regulator receiver domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   3.5e-05      0.12      56     101 ..     749     794 ..     696     802 .. 0.83

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 3.5e-05
                   SEHHHHHHHHHHCTTTSEEEEEESSTSHHHHHHHHHCTESEEEESS CS
  Response_reg  56 mdGlellkeireedpelpviiltahseeedavealkagaddflsKp 101
                   ++G e+++e+r++     + i++a++e +d   +l+aga+  + K 
    KOO21883.1 749 LQGTEICREMRRRGFRGTIAICSANDEPKDEYMYLQAGANVSIGKG 794
                   49*************************************9988885 PP

>> CortBP2  Cortactin-binding protein-2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   6.5   8.5e-05       0.3      98     182 ..      18     101 ..       3     106 .. 0.88
   2 ?    3.3   2.1     0.018        65     102     173 ..     112     183 ..     105     199 .. 0.80
   3 ?    9.0   8.3   0.00034       1.2     101     178 ..     245     322 ..     227     327 .. 0.91
   4 ?    5.9   4.1    0.0029        10     102     183 ..     330     411 ..     318     417 .. 0.87

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 8.5e-05
     CortBP2  98 ermleqLaaaekrhrkvleeLeeekrkheedtaqgddvtylLekererLkqeleqekaqkkklekelkkllekleeerkkqkqiv 182
                 e+ +++Laa+ k h+++    +ee+rkh  +++ + ++     +e+ +L   ++ + + +   ++e++kl+++++   + +   v
  KOO21883.1  18 EK-KAKLAASFKAHAETQWTCDEERRKHMASVQAHAETHAEYHEEKAKLAASVKAHAEMQVAYDEEKAKLVASVKAHAETHAACV 101
                 44.6789999****************************************************************99988877665 PP

  == domain 2  score: 3.3 bits;  conditional E-value: 0.018
     CortBP2 102 eqLaaaekrhrkvleeLeeekrkheedtaqgddvtylLekererLkqeleqekaqkkklekelkklleklee 173
                 ++Laa+ + h+++    +eek k + +++ + ++ +  ++e+  L   ++ +  ++++ e++ ++ +++  +
  KOO21883.1 112 AKLAASFTAHAETQVTYDEEKAKLAASVKAHAETQVAYDEEKAELVASVKAHALAQAEAESKGSRAVNQTFQ 183
                 577888888999999999999999999999999999999999999999999999999998888887777655 PP

  == domain 3  score: 9.0 bits;  conditional E-value: 0.00034
     CortBP2 101 leqLaaaekrhrkvleeLeeekrkheedtaqgddvtylLekererLkqeleqekaqkkklekelkkllekleeerkkq 178
                 +++Laa+ k h+++ +e +eek k + +++ + ++    ++e+ +L   ++ + +++++ ++e +kl+++++   + +
  KOO21883.1 245 RANLAASVKAHAETHAECDEEKAKLAASVKAHAETQEAYDEEKAKLVASVKAHAETHAECDEETRKLVASVKAHAETH 322
                 5689999***************************************************************99887765 PP

  == domain 4  score: 5.9 bits;  conditional E-value: 0.0029
     CortBP2 102 eqLaaaekrhrkvleeLeeekrkheedtaqgddvtylLekererLkqeleqekaqkkklekelkkllekleeerkkqkqivl 183
                 ++L+a+ k h+++ +e + e rk   +++ + ++ +  ++e+ +L   ++ +  ++++ e++ +++ ++ ++    + ++++
  KOO21883.1 330 RKLVASVKAHAETHAECDVETRKLVASVKAHAETQVAYDEEKAKLAASVKAHALTQAEAESKGNRVINHTSKRVMSNTSLMC 411
                 57889999******************************************************99999988877666666655 PP

>> Cytochrom_D1  Cytochrome D1 heme domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.7   0.1    0.0012       4.5     299     358 ..      38      94 ..       7     102 .. 0.78
   2 ?   -1.9   0.1      0.26   9.4e+02     317     357 ..     123     163 ..     109     166 .. 0.75
   3 ?    3.8   0.2    0.0046        16     297     358 ..     282     340 ..     245     385 .. 0.61

  Alignments for each domain:
  == domain 1  score: 5.7 bits;  conditional E-value: 0.0012
                   ETTBT-EEE-HHHHHT--EEEEEE-TTSSEEEEEEE--SSEEEEEETTTTEEEEEEE--S CS
  Cytochrom_D1 299 DkktlekvltlaesaglkvvhvEfnkdGdevwlSvwdgkdalvvyDdktlklkkviklvt 358
                   D++  + +++++ +a+   +h+E+ ++  ++  Sv+   +  v yD+++ kl++++k++ 
    KOO21883.1  38 DEERRKHMASVQAHAE---THAEYHEEKAKLAASVKAHAEMQVAYDEEKAKLVASVKAHA 94 
                   5555555555555555...9*****************9988888************9875 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 0.26
                   EEEEEE-TTSSEEEEEEE--SSEEEEEETTTTEEEEEEE-- CS
  Cytochrom_D1 317 vvhvEfnkdGdevwlSvwdgkdalvvyDdktlklkkviklv 357
                    ++v + ++  ++  Sv+   +  v yD+++ +l++++k++
    KOO21883.1 123 ETQVTYDEEKAKLAASVKAHAETQVAYDEEKAELVASVKAH 163
                   56777888888888888888888888999988888888865 PP

  == domain 3  score: 3.8 bits;  conditional E-value: 0.0046
                   EEETTBT-EEE-HHHHHT--EEEEEE-TTSSEEEEEEE--SSEEEEEETTTTEEEEEEE--S CS
  Cytochrom_D1 297 viDkktlekvltlaesaglkvvhvEfnkdGdevwlSvwdgkdalvvyDdktlklkkviklvt 358
                    +D+++ + v++++ +a+   +h+E  ++ +++  Sv+   +     D++t+kl++++k++ 
    KOO21883.1 282 AYDEEKAKLVASVKAHAE---THAECDEETRKLVASVKAHAETHAECDEETRKLVASVKAHA 340
                   444444444444444444...55566666666666665555555555555555555555443 PP

>> DUF5611  Domain of unknown function (DUF5611)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.1   2.0     0.011        41      20      65 ..      46      93 ..       1     106 [. 0.71
   2 ?    6.2   0.8    0.0054        19      32      74 ..     109     152 ..      95     180 .. 0.70
   3 ?    5.2   1.6     0.011        39      14      77 ..     265     328 ..     260     334 .. 0.72
   4 ?    6.2   1.0    0.0051        18      16      76 ..     330     390 ..     322     402 .. 0.74

  Alignments for each domain:
  == domain 1  score: 5.1 bits;  conditional E-value: 0.011
                HHHHHHT...-EEEEETTEEEEE-TTBS-EEEEE..-SS-EEEEE--. CS
     DUF5611 20 elleeyfg..geveeegdllvvsfgaikklevkisskkkklvvdteer 65
                + ++ +++   e +ee+ +l  s +a ++++v + ++k klv+ ++ +
  KOO21883.1 46 ASVQAHAEthAEYHEEKAKLAASVKAHAEMQVAYDEEKAKLVASVKAH 93
                344445542223344455555688888999999988888888888874 PP

  == domain 2  score: 6.2 bits;  conditional E-value: 0.0054
                 EETTEEEEE-TTBS-EEEEE..-SS-EEEEE--.B....-TTS- CS
     DUF5611  32 eegdllvvsfgaikklevkisskkkklvvdteerdaee.eddea 74 
                 ee+ +l  sf a ++ +v++ ++k kl++ ++ + +++ + de+
  KOO21883.1 109 EEKAKLAASFTAHAETQVTYDEEKAKLAASVKAHAETQvAYDEE 152
                 45556677888888888888888888888888854443422332 PP

  == domain 3  score: 5.2 bits;  conditional E-value: 0.011
                 H.HHHHHHHHHHT.-EEEEE..TTEEEEE-TTBS-EEEEE..-SS-EEEEE--.B...-TTS-HHH CS
     DUF5611  14 eeerlkelleeyfggeveee..gdllvvsfgaikklevkisskkkklvvdteerdaeeeddeaald 77 
                 e+ +l + ++ +++++++++  + +lv s +a ++ ++++ ++++klv+ ++ +  e +++e  ++
  KOO21883.1 265 EKAKLAASVKAHAETQEAYDeeKAKLVASVKAHAETHAECDEETRKLVASVKAHA-E-THAECDEE 328
                 34889999999999665555225567779*******************9999943.3.34444444 PP

  == domain 4  score: 6.2 bits;  conditional E-value: 0.0051
                 HHHHHHHHHHT...-EEEEETTEEEEE-TTBS-EEEEE..-SS-EEEEE--.B...-TTS-HH CS
     DUF5611  16 erlkelleeyfg..geveeegdllvvsfgaikklevkisskkkklvvdteerdaeeeddeaal 76 
                  +l + ++ +++   e + e  +lv s +a ++ +v + ++k kl++ ++ +  +++++e   
  KOO21883.1 330 RKLVASVKAHAEthAECDVETRKLVASVKAHAETQVAYDEEKAKLAASVKAHALTQAEAE--S 390
                 67778888888744556666888999**********************999665443333..3 PP

>> Csd3_N  Csd3 N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.6   0.1     0.027        96       3      52 ..      34      83 ..      32      96 .. 0.83
   2 ?    0.3   0.1      0.29     1e+03      26      51 ..     127     152 ..     109     168 .. 0.75
   3 ?    1.2   0.1      0.15   5.4e+02      22      52 ..     257     287 ..     250     296 .. 0.83
   4 ?    1.3   0.1      0.14   4.9e+02      28      49 ..     326     347 ..     291     377 .. 0.55

  Alignments for each domain:
  == domain 1  score: 3.6 bits;  conditional E-value: 0.027
      Csd3_N  3 kWekgetllefleknnipeklyynldeedkellseiragvkyyelrddkg 52
                +W  +e   +++++ +  +++  + +ee  +l++ ++a +++++ +d++ 
  KOO21883.1 34 QWTCDEERRKHMASVQAHAETHAEYHEEKAKLAASVKAHAEMQVAYDEEK 83
                677777777888888889999999999****************9999654 PP

  == domain 2  score: 0.3 bits;  conditional E-value: 0.29
      Csd3_N  26 nldeedkellseiragvkyyelrddk 51 
                 + dee  +l++ ++a ++ ++ +d++
  KOO21883.1 127 TYDEEKAKLAASVKAHAETQVAYDEE 152
                 45677788888888888888888754 PP

  == domain 3  score: 1.2 bits;  conditional E-value: 0.15
      Csd3_N  22 klyynldeedkellseiragvkyyelrddkg 52 
                 ++  + dee  +l++ ++a ++ +e +d++ 
  KOO21883.1 257 ETHAECDEEKAKLAASVKAHAETQEAYDEEK 287
                 5677889999***************999653 PP

  == domain 4  score: 1.3 bits;  conditional E-value: 0.14
      Csd3_N  28 deedkellseiragvkyyelrd 49 
                 dee ++l++ ++a ++ +   d
  KOO21883.1 326 DEETRKLVASVKAHAETHAECD 347
                 4444444444444444443333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (825 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1835  (0.102348); expected 358.6 (0.02)
Passed bias filter:                      471  (0.0262703); expected 358.6 (0.02)
Passed Vit filter:                        50  (0.00278878); expected 17.9 (0.001)
Passed Fwd filter:                        24  (0.00133861); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 1.02u 0.29s 00:00:01.31 Elapsed: 00:00:00.46
# Mc/sec: 5355.74
//
Query:       KOO21884.1  [L=4480]
Description: leucine rich repeat protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    6.6e-19   66.3  81.9    3.7e-05   23.5   0.7   24.0 25  LRR_6          Leucine Rich repeat
    5.9e-17   61.5  70.2    6.4e-05   23.2   2.4   14.7 17  LRR_4          Leucine Rich repeats (2 copies)
    1.1e-13   50.7  63.5    0.00015   21.5   2.0   13.2 15  LRR_8          Leucine rich repeat
      1e-07   32.1   0.4     0.0014   18.6   0.1    3.3  3  NACHT          NACHT domain
      7e-06   26.4   0.0      0.017   15.5   0.0    2.7  2  AAA_19         AAA domain
    7.4e-05   23.2   0.0     0.0048   17.3   0.0    2.9  2  AAA            ATPase family associated with various cellular
  ------ inclusion threshold ------
      0.075   12.5   0.0        3.3    7.1   0.0    2.3  2  UvrD-helicase  UvrD/REP helicase N-terminal domain
        0.2   12.7   0.7        4.8    8.3   0.5    3.7  2  Pheromone      Fungal mating-type pheromone
        2.7    8.9  46.4         48    5.1   0.1   17.0 19  LRR_1          Leucine Rich Repeat
        5.5    6.5   8.8         14    5.1   0.2    3.4  3  LRR_9          Leucine-rich repeat


Domain annotation for each model (and alignments):
>> LRR_6  Leucine Rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.2   0.1     0.064   1.1e+02       7      18 ..     873     884 ..     872     890 .. 0.80
   2 ?    5.4   0.0     0.013        23       6      23 ..     902     919 ..     902     920 .. 0.88
   3 ?    1.0   0.1      0.32   5.8e+02       2      15 ..     928     941 ..     927     943 .. 0.86
   4 ?    4.6   0.0     0.023        41       2      20 ..     967     985 ..     966     988 .. 0.90
   5 ?    3.4   0.0     0.053        96       5      16 ..    1008    1019 ..    1005    1024 .. 0.93
   6 ?    3.9   0.4     0.038        68       3      14 ..    1062    1073 ..    1060    1075 .. 0.88
   7 !   11.4   0.1   0.00015      0.27       2      16 ..    2678    2692 ..    2677    2694 .. 0.90
   8 ?    2.7   0.1     0.095   1.7e+02       3      16 ..    2710    2723 ..    2709    2724 .. 0.93
   9 !   23.5   0.7     2e-08   3.7e-05       1      24 []    2738    2761 ..    2738    2761 .. 0.95
  10 ?    1.7   0.1       0.2   3.6e+02       2      14 ..    2767    2779 ..    2766    2779 .. 0.89
  11 ?   -0.3   0.0      0.87   1.6e+03       2      10 ..    2868    2876 ..    2867    2887 .. 0.86
  12 ?    0.0   0.1      0.67   1.2e+03       3      16 ..    3072    3085 ..    3070    3088 .. 0.77
  13 ?   -1.4   0.5       1.9   3.4e+03       2      15 ..    3101    3114 ..    3101    3117 .. 0.88
  14 !    7.1   0.0    0.0035       6.3       2      17 ..    3130    3145 ..    3129    3146 .. 0.90
  15 !   11.1   0.1   0.00019      0.34       1      18 [.    3154    3171 ..    3154    3174 .. 0.95
  16 ?    0.7   0.0       0.4   7.1e+02       1      12 [.    3275    3286 ..    3275    3290 .. 0.87
  17 !   10.9   0.0   0.00022       0.4       2      23 ..    3356    3377 ..    3355    3378 .. 0.93
  18 ?   -1.1   0.1       1.5   2.7e+03       5      16 ..    3386    3397 ..    3384    3398 .. 0.89
  19 ?    2.9   0.3     0.082   1.5e+02       2      16 ..    3451    3465 ..    3450    3467 .. 0.87
  20 ?    1.3   0.1      0.26   4.7e+02       3      15 ..    3477    3489 ..    3475    3490 .. 0.89
  21 ?    2.5   0.1      0.11     2e+02       5      16 ..    3502    3513 ..    3501    3513 .. 0.94
  22 ?    0.8   0.7      0.39   6.9e+02       3      16 ..    3523    3536 ..    3521    3536 .. 0.88
  23 ?    0.3   0.1      0.53   9.5e+02       5      13 ..    3548    3556 ..    3544    3560 .. 0.87
  24 ?    0.5   0.0      0.47   8.4e+02       3      15 ..    4309    4321 ..    4307    4322 .. 0.82
  25 ?    4.4   0.0     0.027        48       1      24 []    4409    4432 ..    4409    4432 .. 0.95

  Alignments for each domain:
  == domain 1  score: 3.2 bits;  conditional E-value: 0.064
       LRR_6   7 eLdLsgNdIgDe 18 
                 +LdLs+N++ ++
  KOO21884.1 873 SLDLSDNNLRGD 884
                 8*******9987 PP

  == domain 2  score: 5.4 bits;  conditional E-value: 0.013
       LRR_6   6 teLdLsgNdIgDeGaeaL 23 
                 ++L+L+gN++  eGa   
  KOO21884.1 902 RALNLAGNCLASEGARQV 919
                 68************9765 PP

  == domain 3  score: 1.0 bits;  conditional E-value: 0.32
       LRR_6   2 nthLteLdLsgNdI 15 
                 ++h++ LdLs N++
  KOO21884.1 928 SRHVELLDLSRNGL 941
                 689999******97 PP

  == domain 4  score: 4.6 bits;  conditional E-value: 0.023
       LRR_6   2 nthLteLdLsgNdIgDeGa 20 
                 ++ L +L L++N + DeGa
  KOO21884.1 967 CPRLSTLCLNDNWLKDEGA 985
                 889999************9 PP

  == domain 5  score: 3.4 bits;  conditional E-value: 0.053
       LRR_6    5 LteLdLsgNdIg 16  
                  Lt+LdL+ N++g
  KOO21884.1 1008 LTSLDLARNKLG 1019
                  9*********98 PP

  == domain 6  score: 3.9 bits;  conditional E-value: 0.038
       LRR_6    3 thLteLdLsgNd 14  
                  ++Lt LdLs+N 
  KOO21884.1 1062 SSLTVLDLSSNL 1073
                  79*********6 PP

  == domain 7  score: 11.4 bits;  conditional E-value: 0.00015
       LRR_6    2 nthLteLdLsgNdIg 16  
                  ++hL++LdLs+N++g
  KOO21884.1 2678 SSHLRSLDLSSNKVG 2692
                  79***********98 PP

  == domain 8  score: 2.7 bits;  conditional E-value: 0.095
       LRR_6    3 thLteLdLsgNdIg 16  
                  t+L++L L++N Ig
  KOO21884.1 2710 TSLRTLKLRSNLIG 2723
                  79**********98 PP

  == domain 9  score: 23.5 bits;  conditional E-value: 2e-08
       LRR_6    1 snthLteLdLsgNdIgDeGaeaLa 24  
                  +n +LteLdLs N++gD+G++a +
  KOO21884.1 2738 NNETLTELDLSNNGLGDKGMKAVC 2761
                  699******************987 PP

  == domain 10  score: 1.7 bits;  conditional E-value: 0.2
       LRR_6    2 nthLteLdLsgNd 14  
                  + +L +LdLs+N+
  KOO21884.1 2767 CKSLIKLDLSFNQ 2779
                  78999*******7 PP

  == domain 11  score: -0.3 bits;  conditional E-value: 0.87
       LRR_6    2 nthLteLdL 10  
                  n++LteL+ 
  KOO21884.1 2868 NSTLTELNF 2876
                  9******97 PP

  == domain 12  score: 0.0 bits;  conditional E-value: 0.67
       LRR_6    3 thLteLdLsgNdIg 16  
                  ++L++LdL+g ++g
  KOO21884.1 3072 SSLRTLDLNGVNLG 3085
                  79******986666 PP

  == domain 13  score: -1.4 bits;  conditional E-value: 1.9
       LRR_6    2 nthLteLdLsgNdI 15  
                  +++Lt+L L++N++
  KOO21884.1 3101 CPNLTKLCLASNNL 3114
                  799*********96 PP

  == domain 14  score: 7.1 bits;  conditional E-value: 0.0035
       LRR_6    2 nthLteLdLsgNdIgD 17  
                  +++L +LdLs+N+I++
  KOO21884.1 3130 HCTLSALDLSSNEISG 3145
                  589***********86 PP

  == domain 15  score: 11.1 bits;  conditional E-value: 0.00019
       LRR_6    1 snthLteLdLsgNdIgDe 18  
                  +n++Lt++dL+ N I+D+
  KOO21884.1 3154 QNRSLTSVDLRNNPITDD 3171
                  69***************6 PP

  == domain 16  score: 0.7 bits;  conditional E-value: 0.4
       LRR_6    1 snthLteLdLsg 12  
                  +n++LteL+L++
  KOO21884.1 3275 YNSSLTELELAS 3286
                  69********87 PP

  == domain 17  score: 10.9 bits;  conditional E-value: 0.00022
       LRR_6    2 nthLteLdLsgNdIgDeGaeaL 23  
                  nt+L++L L+ N ++  Ga+ +
  KOO21884.1 3356 NTTLKSLRLAKNRLQATGAQPI 3377
                  9******************987 PP

  == domain 18  score: -1.1 bits;  conditional E-value: 1.5
       LRR_6    5 LteLdLsgNdIg 16  
                  L+ LdLs N++g
  KOO21884.1 3386 LKLLDLSQNGLG 3397
                  788******997 PP

  == domain 19  score: 2.9 bits;  conditional E-value: 0.082
       LRR_6    2 nthLteLdLsgNdIg 16  
                   thL++L+L  N+++
  KOO21884.1 3451 MTHLETLNLDENELS 3465
                  59**********986 PP

  == domain 20  score: 1.3 bits;  conditional E-value: 0.26
       LRR_6    3 thLteLdLsgNdI 15  
                  ++L++L+L+ N++
  KOO21884.1 3477 RSLEHLSLQRNQL 3489
                  79*********98 PP

  == domain 21  score: 2.5 bits;  conditional E-value: 0.11
       LRR_6    5 LteLdLsgNdIg 16  
                  L+eL+L++N+++
  KOO21884.1 3502 LKELNLQSNQLT 3513
                  8*********96 PP

  == domain 22  score: 0.8 bits;  conditional E-value: 0.39
       LRR_6    3 thLteLdLsgNdIg 16  
                  t+L++L+L+ N+++
  KOO21884.1 3523 TKLRSLNLRANHLT 3536
                  89*******99986 PP

  == domain 23  score: 0.3 bits;  conditional E-value: 0.53
       LRR_6    5 LteLdLsgN 13  
                  L++Ld+s+N
  KOO21884.1 3548 LRKLDISDN 3556
                  99******* PP

  == domain 24  score: 0.5 bits;  conditional E-value: 0.47
       LRR_6    3 thLteLdLsgNdI 15  
                  + L++LdLs+ ++
  KOO21884.1 4309 CVLRSLDLSYTGL 4321
                  679******9776 PP

  == domain 25  score: 4.4 bits;  conditional E-value: 0.027
       LRR_6    1 snthLteLdLsgNdIgDeGaeaLa 24  
                  +n  ++e++Ls  +++ eGa aLa
  KOO21884.1 4409 HNAMVREVNLSAAGVTSEGAAALA 4432
                  79999*****************98 PP

>> LRR_4  Leucine Rich repeats (2 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.1       1.3   2.3e+03       5      14 ..     873     882 ..     872     885 .. 0.64
   2 ?   -0.6   0.0       1.1     2e+03       6      41 ..     904     946 ..     902     949 .. 0.64
   3 ?    2.3   0.5      0.14   2.5e+02       1      33 [.     968    1016 ..     968    1026 .. 0.59
   4 ?    3.7   0.1      0.05        89       2      36 ..    1007    1046 ..    1006    1055 .. 0.76
   5 ?    3.4   2.1      0.06   1.1e+02       2      36 ..    1035    1074 ..    1034    1080 .. 0.66
   6 !    8.0   1.2    0.0023       4.1       2      40 ..    2680    2726 ..    2679    2738 .. 0.77
   7 !   11.7   1.5   0.00015      0.27       1      37 [.    2710    2753 ..    2710    2754 .. 0.75
   8 !   14.4   0.1   2.1e-05     0.038       3      42 ..    2742    2786 ..    2740    2788 .. 0.81
   9 !    9.9   1.2   0.00055      0.98       2      37 ..    3073    3116 ..    3072    3122 .. 0.74
  10 !   13.0   0.8   5.9e-05      0.11       3      38 ..    3133    3170 ..    3131    3172 .. 0.82
  11 ?    3.6   0.1     0.053        95       2      33 ..    3358    3394 ..    3357    3399 .. 0.79
  12 ?    5.1   0.2     0.018        33      20      38 ..    3449    3466 ..    3440    3472 .. 0.69
  13 !   11.4   2.8   0.00019      0.34       1      39 [.    3452    3492 ..    3452    3498 .. 0.80
  14 !   16.8   3.1   3.7e-06    0.0066       2      40 ..    3478    3516 ..    3477    3522 .. 0.87
  15 !   23.2   2.4   3.5e-08   6.4e-05       3      41 ..    3502    3540 ..    3500    3543 .. 0.87
  16 !   18.7   1.5   9.6e-07    0.0017       1      39 [.    3523    3562 ..    3523    3568 .. 0.90
  17 ?   -0.1   0.0      0.76   1.4e+03       3      29 ..    4311    4343 ..    4285    4346 .. 0.74

  Alignments for each domain:
  == domain 1  score: -0.8 bits;  conditional E-value: 1.3
                 EEE--SS--- CS
       LRR_4   5 vLdLsnNqlt 14 
                 +LdLs+N+l+
  KOO21884.1 873 SLDLSDNNLR 882
                 4677766665 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 1.1
                 EE--SS---E-S-......HHH.-TT.--EEE-.-S-----GGG CS
       LRR_4   6 LdLsnNqltdipl......lek.lpn.LkeLdLsgNnlitdlde 41 
                 L+L++N+l + +       le+ l    + LdLs+N  +  +d+
  KOO21884.1 904 LNLAGNCLASEGArqvaraLEGaLSRhVELLDLSRN-GLCGIDP 946
                 888888888877755544434445556888888888.5555555 PP

  == domain 3  score: 2.3 bits;  conditional E-value: 0.14
                  SS--EEE--SS---E-S-...HH........H-TT.....--EEE-.-S CS
       LRR_4    1 pnLevLdLsnNqltdipl...le........klpn.....LkeLdLsgN 33  
                  p+L +L+L++N l+d +    l+         l +     L++LdL +N
  KOO21884.1  968 PRLSTLCLNDNWLKDEGAalvLSalgrsghmTLSSaephaLTSLDLARN 1016
                  5788888888888887766442244455543233344444666666555 PP

  == domain 4  score: 3.7 bits;  conditional E-value: 0.05
                  S--EEE--SS---E-S-HH......H.-TT--EEE-.-S--- CS
       LRR_4    2 nLevLdLsnNqltdiplle......k.lpnLkeLdLsgNnli 36  
                   L++LdL+ N+l  ++ ++        ++ L +L L + nl+
  KOO21884.1 1007 ALTSLDLARNKLG-VGACRllvdvaAvCTRLSTLCL-RDNLL 1046
                  599*****99*99.6664444577755999999988.55566 PP

  == domain 5  score: 3.4 bits;  conditional E-value: 0.06
                  S--EEE--SS---.E-S-.HH....H-TT--EEE-.-S--- CS
       LRR_4    2 nLevLdLsnNqlt.dipl.le....klpnLkeLdLsgNnli 36  
                  +L +L+L++N l  +  + l+       +L++LdLs+N l+
  KOO21884.1 1035 RLSTLCLRDNLLDaECAPlLAevlrRASSLTVLDLSSN-LL 1074
                  78888999888885555563333425778999999888.44 PP

  == domain 6  score: 8.0 bits;  conditional E-value: 0.0023
                  S--EEE--SS---.E-S-....HH...H.-TT--EEE-.-S-----GG CS
       LRR_4    2 nLevLdLsnNqlt.dipl....le...k.lpnLkeLdLsgNnlitdld 40  
                  +L++LdLs+N++  + +     l+      ++L++L L + nli++ d
  KOO21884.1 2680 HLRSLDLSSNKVGeENDEsdagLStllTiGTSLRTLKL-RSNLIGKMD 2726
                  79***********5555566552266644699******.666998874 PP

  == domain 7  score: 11.7 bits;  conditional E-value: 0.00015
                  SS--EEE--SS---E-S-....HH....H-TT--EEE-.-S---- CS
       LRR_4    1 pnLevLdLsnNqltdipl....le....klpnLkeLdLsgNnlit 37  
                  ++L++L L++N + + ++    l     ++  L+eLdLs+N  ++
  KOO21884.1 2710 TSLRTLKLRSNLIGKMDWkkqqLTralsNNETLTELDLSNN-GLG 2753
                  79****************88773343324555******555.665 PP

  == domain 8  score: 14.4 bits;  conditional E-value: 2.1e-05
                  --EEE--SS---E-S-......HHH-TT--EEE-.-S-----GGGG CS
       LRR_4    3 LevLdLsnNqltdipl......leklpnLkeLdLsgNnlitdldeL 42  
                  L++LdLsnN l d +       l+ +++L +LdLs+N ++++  eL
  KOO21884.1 2742 LTELDLSNNGLGDKGMkavctaLATCKSLIKLDLSFN-QPGRCKEL 2786
                  9*********999666887666668*********888.88776665 PP

  == domain 9  score: 9.9 bits;  conditional E-value: 0.00055
                  S--EEE--SS---E-S-HH.......H.-TT--EEE-.-S---- CS
       LRR_4    2 nLevLdLsnNqltdiplle.......k.lpnLkeLdLsgNnlit 37  
                  +L++LdL++ +l   ++++       + +pnL++L L +Nnl++
  KOO21884.1 3073 SLRTLDLNGVNLGARGSPQlfdhvlsGmCPNLTKLCLASNNLVD 3116
                  79******87888555544445666666*******999998873 PP

  == domain 10  score: 13.0 bits;  conditional E-value: 5.9e-05
                  --EEE--SS---E-S-...HHH-TT--EEE-.-S----- CS
       LRR_4    3 LevLdLsnNqltdipl...leklpnLkeLdLsgNnlitd 38  
                  L  LdLs+N ++ + l   l+++ +L+++dL +Nn+itd
  KOO21884.1 3133 LSALDLSSNEISGVLLfrsLAQNRSLTSVDL-RNNPITD 3170
                  5569********7666355558999******.999**87 PP

  == domain 11  score: 3.6 bits;  conditional E-value: 0.053
                  S--EEE--SS---E-S-..HH.H-TT..--EEE-.-S CS
       LRR_4    2 nLevLdLsnNqltdipl..le.klpn..LkeLdLsgN 33  
                   L++L L+ N+l+  +   +   l +  Lk LdLs+N
  KOO21884.1 3358 TLKSLRLAKNRLQATGAqpIVeALEHapLKLLDLSQN 3394
                  79***********766675223599999999***998 PP

  == domain 12  score: 5.1 bits;  conditional E-value: 0.018
                  HH-TT--EEE-.-S----- CS
       LRR_4   20 eklpnLkeLdLsgNnlitd 38  
                  +k+++L++L+L +N  +++
  KOO21884.1 3449 SKMTHLETLNLDEN-ELSS 3466
                  36*********888.5544 PP

  == domain 13  score: 11.4 bits;  conditional E-value: 0.00019
                  SS--EEE--SS---.E-S-...HHH-TT--EEE-.-S-----G CS
       LRR_4    1 pnLevLdLsnNqlt.dipl...leklpnLkeLdLsgNnlitdl 39  
                  ++Le+L+L  N l+ + +l   ++ l +L++L+L +N +++ l
  KOO21884.1 3452 THLETLNLDENELSsSYDLeviCR-LRSLEHLSLQRN-QLQEL 3492
                  68************7777765444.*********888.77666 PP

  == domain 14  score: 16.8 bits;  conditional E-value: 3.7e-06
                  S--EEE--SS---E-S-.HHH-TT--EEE-.-S-----GG CS
       LRR_4    2 nLevLdLsnNqltdipl.leklpnLkeLdLsgNnlitdld 40  
                  +Le+L+L+ Nql+++p+ ++ l  LkeL+L +N ++t+l 
  KOO21884.1 3478 SLEHLSLQRNQLQELPSkIGTLFALKELNLQSN-QLTRLQ 3516
                  7****************7666999******556.999886 PP

  == domain 15  score: 23.2 bits;  conditional E-value: 3.5e-08
                  --EEE--SS---E-S-HHH.-TT--EEE-.-S-----GGG CS
       LRR_4    3 LevLdLsnNqltdipllek.lpnLkeLdLsgNnlitdlde 41  
                  L++L+L++Nqlt +++  + l++L++L+L + n +t+l++
  KOO21884.1 3502 LKELNLQSNQLTRLQGSIGtLTKLRSLNL-RANHLTQLTP 3540
                  9***************6655*********.6559998875 PP

  == domain 16  score: 18.7 bits;  conditional E-value: 9.6e-07
                  SS--EEE--SS---E-S-.HHH-TT--EEE-.-S-----G CS
       LRR_4    1 pnLevLdLsnNqltdipl.leklpnLkeLdLsgNnlitdl 39  
                  ++L++L+L+ N+lt + + +++l  L++Ld+s+N ++++l
  KOO21884.1 3523 TKLRSLNLRANHLTQLTPaIGNLSALRKLDISDNAKLRTL 3562
                  79*******88*******7778************888877 PP

  == domain 17  score: -0.1 bits;  conditional E-value: 0.76
                  --EEE--SS---E-S-......HHH-TT--EEE CS
       LRR_4    3 LevLdLsnNqltdipl......leklpnLkeLd 29  
                  L++LdLs + l+ +++      l  + +L+ Ld
  KOO21884.1 4311 LRSLDLSYTGLQMVDWkvlcagLHANASLTFLD 4343
                  788888888888888866533322456677666 PP

>> LRR_8  Leucine rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.5   0.1       0.6   1.1e+03      29      39 ..     873     883 ..     859     891 .. 0.75
   2 ?   -1.8   0.0       1.5   2.7e+03      26      37 ..     930     941 ..     928     946 .. 0.56
   3 ?    0.1   0.0       0.4   7.1e+02      50      61 .]    1007    1018 ..    1002    1020 .. 0.53
   4 !    5.8   0.1    0.0067        12      19      43 ..    1056    1081 ..    1034    1084 .. 0.70
   5 ?    3.6   7.4     0.031        56       1      61 []    2679    2752 ..    2679    2752 .. 0.76
   6 !    5.4   3.8    0.0084        15       2      59 ..    2711    2778 ..    2710    2779 .. 0.64
   7 ?    1.4   0.4      0.16   2.8e+02      16      37 ..    3092    3114 ..    3072    3120 .. 0.62
   8 !    6.3   5.4    0.0046       8.2       1      61 []    3102    3168 ..    3102    3168 .. 0.74
   9 ?   -3.0   0.0       3.6   6.5e+03      23      46 ..    3275    3298 ..    3271    3301 .. 0.74
  10 ?    4.1   0.0     0.022        40       2      37 ..    3358    3396 ..    3357    3406 .. 0.81
  11 !   20.8   1.6   1.3e-07   0.00023      22      61 .]    3449    3489 ..    3442    3489 .. 0.93
  12 !   20.3   3.7   1.9e-07   0.00034      24      61 .]    3499    3535 ..    3493    3535 .. 0.92
  13 !   21.5   2.0   8.3e-08   0.00015       2      49 ..    3524    3570 ..    3523    3576 .. 0.88
  14 ?   -1.2   0.0      0.96   1.7e+03       3      19 ..    4311    4327 ..    4309    4330 .. 0.76
  15 ?   -4.0   0.0       7.6   1.4e+04      41      57 ..    4375    4391 ..    4371    4393 .. 0.75

  Alignments for each domain:
  == domain 1  score: -0.5 bits;  conditional E-value: 0.6
                 EEE--SS---G CS
       LRR_8  29 vLdLsnNlltt 39 
                 +LdLs+N+l+ 
  KOO21884.1 873 SLDLSDNNLRG 883
                 57777777765 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 1.5
                 T--EEE--SS-- CS
       LRR_8  26 nLkvLdLsnNll 37 
                 +++ LdLs+N l
  KOO21884.1 930 HVELLDLSRNGL 941
                 456666666655 PP

  == domain 3  score: 0.1 bits;  conditional E-value: 0.4
                  S-.EEE--SS-- CS
       LRR_8   50 sLrsLdLsgNrL 61  
                  +L+sLdL +N+L
  KOO21884.1 1007 ALTSLDLARNKL 1018
                  344444444443 PP

  == domain 4  score: 5.8 bits;  conditional E-value: 0.0067
                  TSSTT-TT--EEE--SS---G.GGGG CS
       LRR_8   19 eaFkglsnLkvLdLsnNlltt.lspg 43  
                  e+ ++ s+L+vLdLs+Nll   lsp+
  KOO21884.1 1056 EVLRRASSLTVLDLSSNLLCIaLSPE 1081
                  566778999********664436666 PP

  == domain 5  score: 3.6 bits;  conditional E-value: 0.031
                  TT-SEEE-TTS--SEE-TTSSTT-T.......T--EEE--SS---GGGG......GGGTT--S-.EEE--SS-- CS
       LRR_8    1 pnLtsLdLsnNrltslddeaFkgls.......nLkvLdLsnNllttlsp......gafsgLpsLrsLdLsgNrL 61  
                  ++L+sLdLs+N+  + +de+  gls       +L++L+L++Nl+  +++      +a+s+ + L++LdLs+N L
  KOO21884.1 2679 SHLRSLDLSSNKVGEENDESDAGLStlltigtSLRTLKLRSNLIGKMDWkkqqltRALSNNETLTELDLSNNGL 2752
                  58999999999999988888888863333333678999999999888753333337999999999999999976 PP

  == domain 6  score: 5.4 bits;  conditional E-value: 0.0084
                  T-SEEE-TTS--SEE-TT......SSTT-TT--EEE--SS---GGGGG....GGTT--S-.EEE--SS CS
       LRR_8    2 nLtsLdLsnNrltsldde......aFkglsnLkvLdLsnNllttlspg....afsgLpsLrsLdLsgN 59  
                  +L++L L++N + ++d++      a ++++ L++LdLsnN l     +    a++ ++sL +LdLs N
  KOO21884.1 2711 SLRTLKLRSNLIGKMDWKkqqltrALSNNETLTELDLSNNGLGDKGMKavctALATCKSLIKLDLSFN 2778
                  68888888888888887544444478888888888888887765544311114566666666666666 PP

  == domain 7  score: 1.4 bits;  conditional E-value: 0.16
                  E-TTSSTT.-TT--EEE--SS-- CS
       LRR_8   16 lddeaFkg.lsnLkvLdLsnNll 37  
                  l d++ +g ++nL+ L L +N+l
  KOO21884.1 3092 LFDHVLSGmCPNLTKLCLASNNL 3114
                  66777777778888888888877 PP

  == domain 8  score: 6.3 bits;  conditional E-value: 0.0046
                  TT-SEEE-TTS--SEE-TTSSTT.-TT....--EEE--SS---G.GGGGGGTT--S-.EEE--SS-- CS
       LRR_8    1 pnLtsLdLsnNrltslddeaFkg.lsn....LkvLdLsnNlltt.lspgafsgLpsLrsLdLsgNrL 61  
                  pnLt+L L +N+l + + +     l++    L  LdLs+N+++  l  +++++ +sL+s dL++N++
  KOO21884.1 3102 PNLTKLCLASNNLVDSKLDNMVAaLNSphctLSALDLSSNEISGvLLFRSLAQNRSLTSVDLRNNPI 3168
                  5777777777776555444333324434455999**********8778*****************97 PP

  == domain 9  score: -3.0 bits;  conditional E-value: 3.6
                  T-TT--EEE--SS---GGGGGGGT CS
       LRR_8   23 glsnLkvLdLsnNllttlspgafs 46  
                   +s+L++L+L +  l+t+ p+ ++
  KOO21884.1 3275 YNSSLTELELASAPLETFAPEDMR 3298
                  578899999988888888887765 PP

  == domain 10  score: 4.1 bits;  conditional E-value: 0.022
                  T-SEEE-TTS--SEE-TTSSTT.-TT..--EEE--SS-- CS
       LRR_8    2 nLtsLdLsnNrltslddeaFkg.lsn..LkvLdLsnNll 37  
                  +L+sL L +Nrl++ + +     l++  Lk LdLs+N l
  KOO21884.1 3358 TLKSLRLAKNRLQATGAQPIVEaLEHapLKLLDLSQNGL 3396
                  79***********99998777666555599999999966 PP

  == domain 11  score: 20.8 bits;  conditional E-value: 1.3e-07
                  TT-TT--EEE--SS---G.GGGGGGTT--S-.EEE--SS-- CS
       LRR_8   22 kglsnLkvLdLsnNlltt.lspgafsgLpsLrsLdLsgNrL 61  
                  +++++L++L+L +N+l++  + +++  L+sL++L L++N+L
  KOO21884.1 3449 SKMTHLETLNLDENELSSsYDLEVICRLRSLEHLSLQRNQL 3489
                  5799**********99988********************98 PP

  == domain 12  score: 20.3 bits;  conditional E-value: 1.9e-07
                  -TT--EEE--SS---GGGGGGGTT--S-.EEE--SS-- CS
       LRR_8   24 lsnLkvLdLsnNllttlspgafsgLpsLrsLdLsgNrL 61  
                  l +Lk+L+L +N+lt+l +g++  L++LrsL+L+ N+L
  KOO21884.1 3499 LFALKELNLQSNQLTRL-QGSIGTLTKLRSLNLRANHL 3535
                  557**************.7*****************98 PP

  == domain 13  score: 21.5 bits;  conditional E-value: 8.3e-08
                  T-SEEE-TTS--SEE-TTSSTT-TT--EEE--SS.---GGGGGGGTT-- CS
       LRR_8    2 nLtsLdLsnNrltslddeaFkglsnLkvLdLsnN.llttlspgafsgLp 49  
                  +L+sL+L+ N+lt l +   + ls+L+ Ld+s+N +l+tl p+ + +L+
  KOO21884.1 3524 KLRSLNLRANHLTQLTPAIGN-LSALRKLDISDNaKLRTL-PRDMINLH 3570
                  7****************8877.******************.66666664 PP

  == domain 14  score: -1.2 bits;  conditional E-value: 0.96
                  -SEEE-TTS--SEE-TT CS
       LRR_8    3 LtsLdLsnNrltsldde 19  
                  L+sLdLs + l+ +d++
  KOO21884.1 4311 LRSLDLSYTGLQMVDWK 4327
                  78888888888887765 PP

  == domain 15  score: -4.0 bits;  conditional E-value: 7.6
                  GGGGGTT--S-.EEE-- CS
       LRR_8   41 spgafsgLpsLrsLdLs 57  
                  + +af+ L+ +r+L L+
  KOO21884.1 4375 RTNAFDVLEGIRKLSLE 4391
                  56788889999999886 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.6   0.1   7.6e-07    0.0014      79     161 ..     375     449 ..     299     452 .. 0.82
   2 !    9.7   0.0   0.00042      0.75       9     158 ..    1893    2044 ..    1886    2050 .. 0.58
   3 ?   -2.6   0.0       2.5   4.4e+03      93     126 ..    3009    3041 ..    3006    3045 .. 0.76

  Alignments for each domain:
  == domain 1  score: 18.6 bits;  conditional E-value: 7.6e-07
                 SCCCEEEEEE-STT-SS-TCH.........HHHHHCTTTTT--EEEEEEECCCHHHHCTTSSCE....EEEE--TCCHHHHHHHH CS
       NACHT  79 lperlLlilDglDelvtdlgqkekqpvrtlLselirkkllpeasllltvrpralrdleeqleea..ivlevegfsesrrkqlvrk 161
                 +++r+Ll++Dg+De          q+v++ + e +     ++  +++t+rp++l++  e++ +a  ++l+++++s ++   ++r 
  KOO21884.1 375 VARRVLLLIDGIDEGGHAR-----QRVEQHIVEVLAP---QGFVIVVTSRPNGLPE--ELFIKAhfRRLQLKPLSDEQQHVVIRS 449
                 679***********99744.....4588888777777...9999**********54..44444455788********99988875 PP

  == domain 2  score: 9.7 bits;  conditional E-value: 0.00042
                  TTTCHHHHHHH....HHHHHCTS-SCCCC-SEEEEEETTTTT...TS-......-HCHHHCCCCTS--SSS-CCHHHHCCSC..CCEE.EEEE-STT CS
       NACHT    9 aGsGKTtLlqk....lalawaegklpqgafklvFflslrels...rsgna...rsladllfsqlpepaapvsevwavllelp..erlL.lilDglDe 92  
                  +G GKT + ++    l +++a+g   +g+   +++l ++++    r+ +a    ++  l  s  ++  ++v e    +l+++   r+L  ilDg+De
  KOO21884.1 1893 PGTGKTWMCKQavyiLGETLAKGSEHKGMKLCPIVLYVQQIVyllRDATAgssEGVHALFGSYVDAVHRRVAE----MLKQAfqLRALiVILDGVDE 1985
                  6677766655522222245555555555544444444444321112222233344444444444555555555....44333113444499****** PP

                  -SS-TCH.........HHHHHCTTTTT--EEEEEEECCCHHHHCTTSSCE...EEEE--TCCHHHHH CS
       NACHT   93 lvtdlgqkekqpvrtlLselirkkllpeasllltvrpralrdleeqleea.ivlevegfsesrrkql 158 
                  ++   +      v+    + +   +++++++l+t+r ++  ++  +l +   vl ++++s ++ + +
  KOO21884.1 1986 AAGLRRM-----VESFVLDVL---VPSGNRVLITSRVEGIGNMDPYLDRHfSVLDLKELSNEQQRSV 2044
                  **84444.....333333333...3469*******************99988999999999887766 PP

  == domain 3  score: -2.6 bits;  conditional E-value: 2.5
                  -SS-TCH.........HHHHHCTTTTT--EEEEE CS
       NACHT   93 lvtdlgqkekqpvrtlLselirkkllpeaslllt 126 
                  +++  + ++  ++ + L+el+ k++++ +  l++
  KOO21884.1 3009 CPSL-KSDGTSSATEFLRELLDKAMCTFVAELIS 3041
                  4443.33477899999**********99987775 PP

>> AAA_19  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.8   0.0    0.0022       3.9      11      45 ..     289     323 ..     286     329 .. 0.86
   2 !   15.5   0.0   9.4e-06     0.017       7     125 ..    1881    2001 ..    1877    2011 .. 0.68

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 0.0022
      AAA_19  11 kvllvtaGpGtGKTrvlkhivallvelggvkpeei 45 
                 +++l+taGp  GKT +l + v + ++l g ++ ++
  KOO21884.1 289 SCVLLTAGPAAGKTCLLSQLVVHSLDLDGAEVLPV 323
                 789******************99998887766555 PP

  == domain 2  score: 15.5 bits;  conditional E-value: 9.4e-06
      AAA_19    7 alkekvllvtaGpGtGKTrvlkhivallvelggvkp.....eeillvaftgrAakelrerlaalgaeatTiHrlalldfddlltealelleeaeeek 98  
                  +++++ +lv aGpGtGKT + k++v +l e+          + + +v + ++ +  lr+++    ++ + +H+l    +d      +e+l++a    
  KOO21884.1 1881 EHPSQACLVRAGPGTGKTWMCKQAVYILGETLAKGSehkgmKLCPIVLYVQQIVYLLRDAT---AGSSEGVHALFGSYVDAVHRRVAEMLKQA---F 1971
                  578999*******************999887654434555567778888888888888888...78888888886666777777777777753...2 PP

      AAA_19   99 klqeeelli...vDEfqdvd.elqyrLlkal 125 
                  +l ++ ++i   vDE+  +   ++  +l+ l
  KOO21884.1 1972 QL-RALIVIldgVDEAAGLRrMVESFVLDVL 2001
                  33.3333332446676666644444445555 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.5   0.0       0.1   1.8e+02       2     119 ..     292     424 ..     291     437 .. 0.56
   2 !   17.3   0.0   2.7e-06    0.0048       5      84 ..    1891    1996 ..    1887    2018 .. 0.79

  Alignments for each domain:
  == domain 1  score: 2.5 bits;  conditional E-value: 0.1
                 EEESSTTSSHHHHHHHHHHH.H.....THEEEEEETTTCSSS.........................STTHHHHHHHHHHHHHHHTSTSEEEEEETGGG CS
         AAA   2 llyGppGtGKTllakavake.l.....gvefleisgsellsk.........................yvgesekkirelfkeakekakpsilfiDEida 69 
                 ll+  p  GKT l ++++ + l     +v  + i++ +l  k                         +v    +++  ++++a   +  + l+iD id+
  KOO21884.1 292 LLTAGPAAGKTCLLSQLVVHsLdldgaEVLPVLIKVQDLQ-KlllskepsvvsaferawnwvdaylcLVHGLGSELYLFLRQAMVAR-RVLLLIDGIDE 388
                 6777777788877666555523333222223444444444.3344445555555666666555555544444444555555555544.7999******* PP

                 HHHHHTTCCCHHHHHHHHHHHHHHHHTTTSSSTEEEEEEESSGGGSTHHH CS
         AAA  70 laksrsgseseeeervvnqLlteldgvkkkeskvivigatnrpdkldpal 119
                  + +r        +rv ++++++l  +       +vi++t rp+ l+++l
  KOO21884.1 389 GGHAR--------QRVEQHIVEVLAPQG------FVIVVTSRPNGLPEEL 424
                 99999........555555555555432......4666666666666666 PP

  == domain 2  score: 17.3 bits;  conditional E-value: 2.7e-06
                  SSTTSSHHHHHHHHHHHHT...HEEEEEETTTCSSS.............................STTHHHHHHHHHHHHHHHTSTSEEEEEETGGG CS
         AAA    5 GppGtGKTllakavakelg...vefleisgsellsk.............................yvgesekkirelfkeakekakpsilfiDEida 69  
                    pGtGKT ++k+ +  lg   ++  e +g++l+                               yv +  ++++e++k+a + +   i+++D +d+
  KOO21884.1 1891 AGPGTGKTWMCKQAVYILGetlAKGSEHKGMKLC-PivlyvqqivyllrdatagssegvhalfgsYVDAVHRRVAEMLKQAFQLR-ALIVILDGVDE 1985
                  57*************9998333333444444444.257777888888888888889999999999******************98.9********** PP

                  HHHHHTTCCCHHHHH CS
         AAA   70 laksrsgseseeeer 84  
                   a+ r    + +e+ 
  KOO21884.1 1986 AAGLR----RMVESF 1996
                  *9999....344444 PP

>> UvrD-helicase  UvrD/REP helicase N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.6   0.0     0.043        77      14      44 ..     289     319 ..     280     325 .. 0.83
   2 ?    7.1   0.0    0.0019       3.3      11      32 ..    1882    1903 ..    1876    1914 .. 0.81

  Alignments for each domain:
  == domain 1  score: 2.6 bits;  conditional E-value: 0.043
                    SEEEEEE-TTSSHHHHHHHHHHHHHHTSSST CS
  UvrD-helicase  14 gpilveAsAGsGKTfvlaerilrlikeeeie 44 
                    + +l+ A++ +GKT  l +++++ ++  + e
     KOO21884.1 289 SCVLLTAGPAAGKTCLLSQLVVHSLDLDGAE 319
                    56899******************99866655 PP

  == domain 2  score: 7.1 bits;  conditional E-value: 0.0019
                     S-SSEEEEEE-TTSSHHHHHHH CS
  UvrD-helicase   11 slggpilveAsAGsGKTfvlae 32  
                     ++++ +lv A++G+GKT    +
     KOO21884.1 1882 HPSQACLVRAGPGTGKTWMCKQ 1903
                     67899************76554 PP

>> Pheromone  Fungal mating-type pheromone
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.3   0.5    0.0027       4.8      17      61 ..    1333    1377 ..    1301    1382 .. 0.88
   2 ?   -3.0   0.0       8.7   1.6e+04      46      59 ..    2844    2857 ..    2841    2862 .. 0.78

  Alignments for each domain:
  == domain 1  score: 8.3 bits;  conditional E-value: 0.0027
   Pheromone   17 aessesalfasssspspspalsssasasddevlavpvDaErrggg 61  
                  +++ + ++++++++p+++++++ s+sa+ +e  +v +D +++g +
  KOO21884.1 1333 RSARDPNNATPDTMPRTASTVKGSSSADHAEGESVDADKPQGGNS 1377
                  45667788999*****************************99876 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 8.7
   Pheromone   46 devlavpvDaErrg 59  
                  + +l++p++a+r  
  KOO21884.1 2844 ATSLQWPANADRSD 2857
                  56799******976 PP

>> LRR_1  Leucine Rich Repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.0       2.2   3.9e+03       4      13 ..     873     882 ..     872     892 .. 0.84
   2 ?   -1.7   0.0       4.3   7.8e+03       3      14 ..     902     913 ..     902     925 .. 0.79
   3 ?    0.0   0.1       1.2   2.2e+03       3      16 ..     932     945 ..     930     957 .. 0.74
   4 ?   -0.6   0.0         2   3.5e+03       2      12 ..    1008    1018 ..    1007    1034 .. 0.84
   5 ?    1.5   0.0       0.4   7.1e+02       1      12 [.    1063    1074 ..    1063    1085 .. 0.80
   6 ?    2.4   0.0      0.21   3.7e+02       1      12 [.    2680    2691 ..    2680    2704 .. 0.84
   7 ?   -2.7   0.0       9.4   1.7e+04       1      12 [.    2711    2722 ..    2711    2727 .. 0.86
   8 ?    3.9   0.0     0.064   1.2e+02       2      15 ..    2742    2755 ..    2741    2762 .. 0.84
   9 ?    0.3   0.1      0.99   1.8e+03       1      12 [.    2769    2780 ..    2769    2794 .. 0.79
  10 ?   -0.8   0.0       2.3   4.1e+03       1      12 [.    3073    3084 ..    3073    3097 .. 0.71
  11 ?   -0.9   1.0       2.5   4.4e+03       2      10 ..    3133    3141 ..    3103    3153 .. 0.48
  12 ?    1.8   0.0      0.31   5.6e+02       1      14 [.    3157    3170 ..    3157    3179 .. 0.84
  13 ?   -0.2   0.1       1.4   2.5e+03       2      12 ..    3386    3396 ..    3386    3403 .. 0.83
  14 ?   -0.9   0.2       2.4   4.3e+03       1      13 [.    3453    3465 ..    3453    3472 .. 0.83
  15 ?    2.6   0.2      0.17     3e+02       1      17 [.    3478    3494 ..    3478    3499 .. 0.80
  16 ?    3.2   0.1      0.11   1.9e+02       2      16 ..    3502    3516 ..    3501    3519 .. 0.89
  17 ?    5.1   0.1     0.027        48       1      17 [.    3524    3540 ..    3524    3542 .. 0.93
  18 ?    0.4   0.0      0.89   1.6e+03       2      18 ..    3548    3564 ..    3547    3569 .. 0.78
  19 ?   -1.9   0.0       5.1   9.1e+03       2      12 ..    4311    4321 ..    4311    4337 .. 0.82

  Alignments for each domain:
  == domain 1  score: -0.7 bits;  conditional E-value: 2.2
       LRR_1   4 hLdLsnnpll 13 
                 +LdLs+n+l 
  KOO21884.1 873 SLDLSDNNLR 882
                 7******994 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 4.3
       LRR_1   3 rhLdLsnnpllg 14 
                 r L+L +n+l +
  KOO21884.1 902 RALNLAGNCLAS 913
                 579******944 PP

  == domain 3  score: 0.0 bits;  conditional E-value: 1.2
       LRR_1   3 rhLdLsnnpllglp 16 
                 + LdLs+n l g+ 
  KOO21884.1 932 ELLDLSRNGLCGID 945
                 679******94443 PP

  == domain 4  score: -0.6 bits;  conditional E-value: 2
       LRR_1    2 LrhLdLsnnpl 12  
                  L++LdL +n l
  KOO21884.1 1008 LTSLDLARNKL 1018
                  99*******98 PP

  == domain 5  score: 1.5 bits;  conditional E-value: 0.4
       LRR_1    1 nLrhLdLsnnpl 12  
                  +L++LdLs+n l
  KOO21884.1 1063 SLTVLDLSSNLL 1074
                  699*******98 PP

  == domain 6  score: 2.4 bits;  conditional E-value: 0.21
       LRR_1    1 nLrhLdLsnnpl 12  
                  +Lr+LdLs+n  
  KOO21884.1 2680 HLRSLDLSSNKV 2691
                  69********75 PP

  == domain 7  score: -2.7 bits;  conditional E-value: 9.4
       LRR_1    1 nLrhLdLsnnpl 12  
                  +Lr+L L++n +
  KOO21884.1 2711 SLRTLKLRSNLI 2722
                  69******9976 PP

  == domain 8  score: 3.9 bits;  conditional E-value: 0.064
       LRR_1    2 LrhLdLsnnpllgl 15  
                  L++LdLsnn l+++
  KOO21884.1 2742 LTELDLSNNGLGDK 2755
                  99*******99776 PP

  == domain 9  score: 0.3 bits;  conditional E-value: 0.99
       LRR_1    1 nLrhLdLsnnpl 12  
                  +L +LdLs n++
  KOO21884.1 2769 SLIKLDLSFNQP 2780
                  5899******98 PP

  == domain 10  score: -0.8 bits;  conditional E-value: 2.3
       LRR_1    1 nLrhLdLsnnpl 12  
                  +Lr+LdL++ +l
  KOO21884.1 3073 SLRTLDLNGVNL 3084
                  69*****87665 PP

  == domain 11  score: -0.9 bits;  conditional E-value: 2.5
       LRR_1    2 LrhLdLsnn 10  
                  L  LdLs+n
  KOO21884.1 3133 LSALDLSSN 3141
                  233444444 PP

  == domain 12  score: 1.8 bits;  conditional E-value: 0.31
       LRR_1    1 nLrhLdLsnnpllg 14  
                  +L++ dL+nnp+++
  KOO21884.1 3157 SLTSVDLRNNPITD 3170
                  699********965 PP

  == domain 13  score: -0.2 bits;  conditional E-value: 1.4
       LRR_1    2 LrhLdLsnnpl 12  
                  L+ LdLs+n l
  KOO21884.1 3386 LKLLDLSQNGL 3396
                  899******98 PP

  == domain 14  score: -0.9 bits;  conditional E-value: 2.4
       LRR_1    1 nLrhLdLsnnpll 13  
                  +L++L+L  n l+
  KOO21884.1 3453 HLETLNLDENELS 3465
                  69*****999884 PP

  == domain 15  score: 2.6 bits;  conditional E-value: 0.17
       LRR_1    1 nLrhLdLsnnpllglpp 17  
                  +L+hL L +n+l  lp+
  KOO21884.1 3478 SLEHLSLQRNQLQELPS 3494
                  69**********55544 PP

  == domain 16  score: 3.2 bits;  conditional E-value: 0.11
       LRR_1    2 LrhLdLsnnpllglp 16  
                  L++L+L +n+l++l+
  KOO21884.1 3502 LKELNLQSNQLTRLQ 3516
                  9**********8875 PP

  == domain 17  score: 5.1 bits;  conditional E-value: 0.027
       LRR_1    1 nLrhLdLsnnpllglpp 17  
                  +Lr+L+L+ n+l++l+p
  KOO21884.1 3524 KLRSLNLRANHLTQLTP 3540
                  7*************998 PP

  == domain 18  score: 0.4 bits;  conditional E-value: 0.89
       LRR_1    2 LrhLdLsnnpllglppn 18  
                  Lr+Ld+s+n  l+ +p+
  KOO21884.1 3548 LRKLDISDNAKLRTLPR 3564
                  9*******976666655 PP

  == domain 19  score: -1.9 bits;  conditional E-value: 5.1
       LRR_1    2 LrhLdLsnnpl 12  
                  Lr+LdLs+  l
  KOO21884.1 4311 LRSLDLSYTGL 4321
                  9*****98765 PP

>> LRR_9  Leucine-rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.0   0.2       0.3   5.5e+02      81     130 ..    3124    3173 ..    3097    3185 .. 0.70
   2 ?    5.1   0.2    0.0079        14      87     126 ..    3451    3490 ..    3447    3496 .. 0.90
   3 ?    4.3   1.1     0.015        26      52     116 ..    3487    3552 ..    3481    3567 .. 0.75

  Alignments for each domain:
  == domain 1  score: -0.0 bits;  conditional E-value: 0.3
       LRR_9   81 egleevlPnleelvltnnelqeladldPlaslkklellsllknpvtnkke 130 
                    l+    +l++l l++ne+  +  +  la+ ++l+++ l +np+t+ + 
  KOO21884.1 3124 AALNSPHCTLSALDLSSNEISGVLLFRSLAQNRSLTSVDLRNNPITDDQM 3173
                  33444455678888999999999999999999999999999999987765 PP

  == domain 2  score: 5.1 bits;  conditional E-value: 0.0079
       LRR_9   87 lPnleelvltnnelqeladldPlaslkklellsllknpvt 126 
                  + +le+l l +nel +  dl+ +  l++le lsl +n + 
  KOO21884.1 3451 MTHLETLNLDENELSSSYDLEVICRLRSLEHLSLQRNQLQ 3490
                  56899*****************************999875 PP

  == domain 3  score: 4.3 bits;  conditional E-value: 0.015
       LRR_9   52 ndirkl.dgfPllkrlktlllnnnrivriaegleevlPnleelvltnnelqelad.ldPlaslkkle 116 
                  n++++l   +  l  lk l l++n+++r++  ++ +l +l++l l  n+l++l+  +  l  l+kl+
  KOO21884.1 3487 NQLQELpSKIGTLFALKELNLQSNQLTRLQGSIG-TLTKLRSLNLRANHLTQLTPaIGNLSALRKLD 3552
                  66666623466788899999********999887.68999***999999999974255555555554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (4480 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       424  (0.0236488); expected 358.6 (0.02)
Passed bias filter:                      327  (0.0182386); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 1.67u 0.31s 00:00:01.98 Elapsed: 00:00:00.53
# Mc/sec: 25675.78
//
Query:       KOO21885.1  [L=534]
Description: hypothetical protein Ctob_000264 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.029   14.5  20.2      0.066   13.3  20.2    1.6  1  HC2       Histone H1-like nucleoprotein HC2


Domain annotation for each model (and alignments):
>> HC2  Histone H1-like nucleoprotein HC2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3  20.2   3.7e-06     0.066      85     144 ..     185     243 ..     133     251 .. 0.50

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 3.7e-06
         HC2  85 vakKavAKKaaakKvvakkvvakKtvakkaaaakKpaakkavakkaaarKaaakKavaKk 144
                 +  Ka+  Kaaa K++  k++a K++a   aaa  +a+ +a+  +aaa Kaaa K v+ k
  KOO21885.1 185 AEEKAAGEKAAAEKAAGEKAAAEKAAAES-AAAVSAAVDQAAVDQAAADKAAAEKVVTGK 243
                 22233333333333333333333333322.222233333333333333333333333322 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (534 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1161  (0.0647554); expected 358.6 (0.02)
Passed bias filter:                      492  (0.0274416); expected 358.6 (0.02)
Passed Vit filter:                        59  (0.00329076); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.63u 0.26s 00:00:00.89 Elapsed: 00:00:00.44
# Mc/sec: 3640.09
//
Query:       KOO21886.1  [L=261]
Description: hypothetical protein Ctob_000265 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.1e-05   24.3   0.0    6.3e-05   23.7   0.0    1.3  1  uDENN     uDENN domain
     0.0001   22.3   0.0    0.00016   21.7   0.0    1.3  1  DENN      DENN (AEX-3) domain


Domain annotation for each model (and alignments):
>> uDENN  uDENN domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.7   0.0     7e-09   6.3e-05       1      66 []      21      85 ..      21      85 .. 0.92

  Alignments for each domain:
  == domain 1  score: 23.7 bits;  conditional E-value: 7e-09
       uDENN  1 PevldryPpadhedfp.pedvplFcfPeglewsssteksserpepefFsFvLTdedgsrvYGaCltf 66
                P+vl+r P+ d++ +p p+ ++ F++  g+  +++  + + +pe+   +  LT edg+r+++a+ltf
  KOO21886.1 21 PRVLCRWPQVDRSYLPhPPGIAAFALAAGA--WVAAPRGEAPPEELELTAALTLEDGTRIHAASLTF 85
                89***************************7..777777777777779******************98 PP

>> DENN  DENN (AEX-3) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.7   0.0   1.8e-08   0.00016       1     111 [.      94     203 ..      94     206 .. 0.80

  Alignments for each domain:
  == domain 1  score: 21.7 bits;  conditional E-value: 1.8e-08
        DENN   1 yipkalcilsrlpffelfkkiLkalekrlkssskeaplesfianlllevplPapgktlklvslaveekillqrpe..dsel.PledvdlkelfrcLsie 96 
                 ++p +lc+ls++p++e + + L++l  +   ++  a+  +++a+ ll  p+P pg  l++   ++  +++++     ++   P+ +++l+++ + +++e
  KOO21886.1  94 WTPCSLCLLSHVPLLEQLLSALRTLRAATLRGA--AE-ARLVARALLRLPMPLPGVELRIRL-GAPTRWTTHVLRatPTGApPILGISLYAFVHRVGVE 188
                 78999********************99998888..34.56677779999*********9944.444444444333123333477*************** PP

        DENN  97 nilqlfeavLlErri 111
                   ++ +e++L+E r+
  KOO21886.1 189 VAITAVEVLLSELRL 203
                 ************885 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (261 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       436  (0.0243181); expected 358.6 (0.02)
Passed bias filter:                      295  (0.0164538); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.42u 0.25s 00:00:00.67 Elapsed: 00:00:00.40
# Mc/sec: 1960.38
//
Query:       KOO21887.1  [L=374]
Description: phosphatidylinositol n-acetylglucosaminyltransferase subunit a-like protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.4e-32  111.4   3.6    9.2e-32  110.4   3.6    1.6  1  Glyco_transf_4   Glycosyltransferase Family 4
    1.8e-28   98.9   0.2    4.1e-28   97.8   0.2    1.6  1  PIGA             PIGA (GPI anchor biosynthesis)
    2.6e-22   80.0   6.7    2.6e-22   80.0   6.7    2.3  2  Glyco_trans_4_4  Glycosyl transferase 4-like domain
    4.4e-22   78.4   0.0    6.6e-22   77.8   0.0    1.2  1  Glycos_transf_1  Glycosyl transferases group 1
    1.5e-19   70.7   0.2    4.3e-19   69.3   0.2    1.8  1  Glyco_trans_1_4  Glycosyl transferases group 1
     0.0012   18.5   0.1      0.065   12.9   0.0    2.2  2  Glyco_transf_5   Starch synthase catalytic domain
     0.0047   17.0   0.0     0.0083   16.2   0.0    1.4  1  Glyco_trans_4_2  Glycosyl transferase 4-like


Domain annotation for each model (and alignments):
>> Glyco_transf_4  Glycosyltransferase Family 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  110.4   3.6   3.6e-35   9.2e-32       1     169 [.      31     197 ..      31     198 .. 0.87

  Alignments for each domain:
  == domain 1  score: 110.4 bits;  conditional E-value: 3.6e-35
  Glyco_transf_4   1 vGGverhvleLaraLarrGheVtvvtpgddgpleeev....elvvrvprvplpllkrllrslaflrrlrrllkrekpDvvHahspaalgaallal 91 
                     +GGve hv++La++L r+Gh+V vvt++++ +++ +       v+ vp +       l+  +  ++ lr +++re + vvHah   ++ + ++ l
      KOO21887.1  31 IGGVESHVHQLAQGLLRLGHKVIVVTHRYSSRTGVRWlasgLKVYHVPFPAVYDGSMLPTAVLLMPLLRDIFERESVTVVHAHALCTISLEAVVL 125
                     7***********************************9944433344444444444445556666889******************9999887777 PP

  Glyco_transf_4  92 rrrlgiplVltvHglyekrllkarlkplsrllralerrllrradrviavSeatadelrerygvppekitVipnGvDle 169
                     ++  g ++V+t H+ +      + ++ l+  l+ l r +l +ad++i vS+++a++l++r+ +pp++++Vipn+vD +
      KOO21887.1 126 AALMGYRVVYTEHSNF------GLSGVLDGSLNLLSRAVLAHADALISVSRSCAANLAQRCWLPPSRVHVIPNAVDAA 197
                     7779************......8999999999999999**************************************75 PP

>> PIGA  PIGA (GPI anchor biosynthesis)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   97.8   0.2   1.6e-31   4.1e-28       1      89 [.      57     144 ..      57     145 .. 0.98

  Alignments for each domain:
  == domain 1  score: 97.8 bits;  conditional E-value: 1.6e-31
        PIGA   1 hayedrkGvryltnglkvYyvPllvlyrevtlptvlstlpllrnillrekidivhghqalstlaheailhaktlGlktvftDhsLfgfa 89 
                 h y++r+Gvr+l++glkvY+vP+ ++y+ ++lpt++  +pllr i+ re++++vh+h+ l+t++ ea++ a  +G+++v+t+hs fg++
  KOO21887.1  57 HRYSSRTGVRWLASGLKVYHVPFPAVYDGSMLPTAVLLMPLLRDIFERESVTVVHAHA-LCTISLEAVVLAALMGYRVVYTEHSNFGLS 144
                 99*******************************************************6.69*************************985 PP

>> Glyco_trans_4_4  Glycosyl transferase 4-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   80.0   6.7     1e-25   2.6e-22       1     159 [.      32     192 ..      32     193 .. 0.85
   2 ?   -2.1   6.3       1.8   4.6e+03       9     104 ..     231     357 ..     225     374 .] 0.49

  Alignments for each domain:
  == domain 1  score: 80.0 bits;  conditional E-value: 1e-25
  Glyco_trans_4_4   1 gGigryvaelaraLaarGheVtvltpapapgap.eleedgvrvhrlpvprrps...pladlaalralrrllrqrrerpdvvhahs.pt.aglaa 88 
                      gG++ +v++la++L ++Gh V v+t ++  +   +  + g+ v+++p+p+  +   +++ +  ++ lr+++  +re + vvhah  +t +  a+
       KOO21887.1  32 GGVESHVHQLAQGLLRLGHKVIVVTHRYSSRTGvRWLASGLKVYHVPFPAVYDgsmLPTAVLLMPLLRDIF--ERESVTVVHAHAlCTiSLEAV 123
                      8************************87766644123588*******9887654223666777789******..************767455666 PP

  Glyco_trans_4_4  89 rlarrrrgiplvvtlhglllrrgsgavrrlyralerrllrradavlvvseaeaeelra.lgvpadrvvvvpn 159
                      +la+   g ++v+t h++ +   sg +   +  l r++l++ada+++vs++ a+ l++ + +p++rv+v+pn
       KOO21887.1 124 VLAA-LMGYRVVYTEHSNFG--LSGVLDGSLNLLSRAVLAHADALISVSRSCAANLAQrCWLPPSRVHVIPN 192
                      6777.99*********9854..5789999999*************************9899**********9 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 1.8
  Glyco_trans_4_4   9 elaraLaarGheVtvltpapapg.....apeleedgvrvhrl.pvprrpspladlaal............................ralrrllr 68 
                      +l+ +  +r ++V+ ++ ++ p+     a++++++ +  + l  + ++++ +a l +                             + + ++  
       KOO21887.1 231 QLIPEVCRRHADVHFVVGGEGPKrsaleAMRERHGLCGRIELlGAVAHRDAPAVLTRGhiflntslteafciaileavccgltvvsTNVGGVP- 323
                      667777788899999997777773433344466777764443255555544444332222334444444444333333333333332223333. PP

  Glyco_trans_4_4  69 qrrerpdvvhahsptaglaarlarrrrgiplvvtlh 104
                       +  + + +h+ +pta+++  ++     + +  t+h
       KOO21887.1 324 -ELLPAHMLHLTEPTAAALLSVLD-DVIPTVRRTPH 357
                      .57788888888887554443333.22222233333 PP

>> Glycos_transf_1  Glycosyl transferases group 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   77.8   0.0   2.6e-25   6.6e-22      12     132 ..     208     327 ..     204     349 .. 0.93

  Alignments for each domain:
  == domain 1  score: 77.8 bits;  conditional E-value: 2.6e-25
                      TTT-EEEEEESS-TTTTTHHHHHHHHHCCCCCHCSCEEEEEES.STTHHHHHHHHHHHCTTCGGGEEECCHSSSHHHHHHCESEEEEEESSBSS CS
  Glycos_transf_1  12 nekkkiilsvgrlekeKgvdllikafallkkqlnpnvklviaGngeeekelkklaeelelsdnviflgevsredleellknadifvlpsisEgf 105
                      + ++ +i+++ rl+++Kg  ll +++++++++ + +v++v+ G+g+++  l+++ e ++l  ++++lg v + d +++l++ +if+ +s +E+f
       KOO21887.1 208 PAGRVVIVVLTRLVRRKGALLLTQLIPEVCRR-HADVHFVVGGEGPKRSALEAMRERHGLCGRIELLGAVAHRDAPAVLTRGHIFLNTSLTEAF 300
                      668899************************99.************************************************************* PP

                      -HHHHHHHHTT--EEEETTTTHCHHCH CS
  Glycos_transf_1 106 GivllEAmaaglpviasnaggpaevvk 132
                      +i++lEA  +gl v+++n+gg++e++ 
       KOO21887.1 301 CIAILEAVCCGLTVVSTNVGGVPELLP 327
                      ************************875 PP

>> Glyco_trans_1_4  Glycosyl transferases group 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.3   0.2   1.7e-22   4.3e-19       3     113 ..     213     330 ..     211     347 .. 0.82

  Alignments for each domain:
  == domain 1  score: 69.3 bits;  conditional E-value: 1.7e-22
                      EEEEES---GG.GTHHHHHHHHHHHH.HH..EEEEEES---...HHHHHHHT..T-T.TEEEE---..THHHHHHHH-SEEEE--..---SHHH CS
  Glyco_trans_1_4   3 vilfvGrleenvkgvdllleavpllrkkd..vrlvivGdgp.rpeeleelaa..gleerveftGfv..edlaellaaadvfvaPs..egfglkl 87 
                      vi+ + rl+ ++kg+ ll + +p++ +++  v++v+ G+gp r ++le++ +  gl  r+e++G v   d +++l + ++f+++s  e f +++
       KOO21887.1 213 VIVVLTRLV-RRKGALLLTQLIPEVCRRHadVHFVVGGEGPkR-SALEAMRErhGLCGRIELLGAVahRDAPAVLTRGHIFLNTSltEAFCIAI 304
                      799999**5.66**************88445**********55.588865545799999*******9999****************99****** PP

                      HHHHHTT-EEEE-TGGGTTT--.TTSS CS
  Glyco_trans_1_4  88 lEamaaglpvVatdvggiaevv.geng 113
                      lEa  +gl vV+t+vgg++e++   + 
       KOO21887.1 305 LEAVCCGLTVVSTNVGGVPELLpA-HM 330
                      ********************8843.32 PP

>> Glyco_transf_5  Starch synthase catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.9   0.0   2.5e-05     0.065      14      45 ..      30      61 ..      23      87 .. 0.85
   2 ?    3.5   0.0      0.02        51     203     230 ..     145     177 ..      89     180 .. 0.63

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 2.5e-05
  Glyco_transf_5 14 ktGGLadvvgaLpkaLaklghdvrvilPryga 45
                      GG+  +v++L++ L +lgh+v v++ ry++
      KOO21887.1 30 SIGGVESHVHQLAQGLLRLGHKVIVVTHRYSS 61
                    579***************************54 PP

  == domain 2  score: 3.5 bits;  conditional E-value: 0.02
  Glyco_transf_5 203 g....kvnflk.agivyadavttVSptyakEil 230
                     g     +n+l  a + +ada++ VS++ a  ++
      KOO21887.1 145 GvldgSLNLLSrAVLAHADALISVSRSCAANLA 177
                     3555599999978889**********9998765 PP

>> Glyco_trans_4_2  Glycosyl transferase 4-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.0   3.2e-06    0.0083      11     138 ..      36     168 ..      31     169 .. 0.78

  Alignments for each domain:
  == domain 1  score: 16.2 bits;  conditional E-value: 3.2e-06
  Glyco_trans_4_2  11 vhtlrlakeLakrgyeVhvitpkkga.kdele.aegihvhrlkvd....rkg.pleylkafklkklikkikPDvvhahyakpygllgslaarls 97 
                       h+ +la++L   g++V v+t + ++  ++   a g++v+ ++ +     +  p   l +  l++++++++  vvhah    + l +  +a l 
       KOO21887.1  36 SHVHQLAQGLLRLGHKVIVVTHRYSSrTGVRWlASGLKVYHVPFPavydGSMlPTAVLLMPLLRDIFERESVTVVHAHALCTISLEAVVLAALM 129
                      588999****************87776444434999******999664422246666666799*****************99989898888888 PP

  Glyco_trans_4_2  98 gvipvvlsvwGldv.lkfpkksklkklllklalkkatkvist 138
                      g  +vv++ + + + l++  ++    ll ++ l +a+++is 
       KOO21887.1 130 G-YRVVYTEH-SNFgLSGVLDG-SLNLLSRAVLAHADALISV 168
                      8.9****999.77765555555.5666778888888888875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (374 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       375  (0.0209158); expected 358.6 (0.02)
Passed bias filter:                      297  (0.0165653); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.48u 0.26s 00:00:00.74 Elapsed: 00:00:00.42
# Mc/sec: 2661.60
//
Query:       KOO21888.1  [L=1353]
Description: tRNA 2 -phosphotransferase 1-like protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.5e-50  170.6   0.1    6.6e-50  169.7   0.1    1.5  1  PTS_2-RNA       RNA 2'-phosphotransferase, Tpt1 / KptA family
    8.2e-05   22.6   0.3    8.2e-05   22.6   0.3    3.5  4  APH             Phosphotransferase enzyme family
    0.00023   20.6   0.0    0.00072   19.0   0.0    1.8  1  Kdo             Lipopolysaccharide kinase (Kdo/WaaP) family
  ------ inclusion threshold ------
       0.02   14.5   0.0      0.044   13.3   0.0    1.5  1  Choline_kinase  Choline/ethanolamine kinase
       0.17   11.7   0.0       0.31   10.9   0.0    1.3  1  DUF5117         Domain of unknown function (DUF5117)


Domain annotation for each model (and alignments):
>> PTS_2-RNA  RNA 2'-phosphotransferase, Tpt1 / KptA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  169.7   0.1   1.8e-53   6.6e-50       3     181 .]      78     274 ..      76     274 .. 0.84

  Alignments for each domain:
  == domain 1  score: 169.7 bits;  conditional E-value: 1.8e-53
   PTS_2-RNA   3 evqlskaLsyiLRhgaekegLkiredGyvkvedlLelpklkslk.............vtleeikevVesndKqRFelvel...ee.lliranqghsikk 84 
                 +vqlsk +s++LRh+a++  ++i+ dG+v + d +++ + ++ +             +t+e+++++V  ndKqRFel e     + ++ira qghs+k+
  KOO21888.1  78 DVQLSKLMSKLLRHKAKEYDVPIDTDGWVLLTDAIAHVNRREAElalesepprepctWTEEHVHAMVGLNDKQRFELREQptaGGvYQIRAAQGHSMKQ 176
                 89********************************9977554433333333455555577*****************9955598556**********988 PP

   PTS_2-RNA  85 vesselllepi...esaeelpevvvHgTylkawesilasggLkrmsrnhihlatglpgekevisgmrksaevliyidvekaladgikfyvsengviLte 180
                 v ++  +l  +   ++++++p ++vHgT++ a+++il  +gL++m+r+hihla+gl ge++visgmr+++ v+i++d+++al++gi+f+ s+ngviL+e
  KOO21888.1 177 VGEQIGTLITFdseTKEASVP-FAVHGTTITALRQIL-AQGLHKMERHHIHLAKGLLGEEAVISGMRHDCAVYIWVDISSALEHGIRFFESTNGVILCE 273
                 755555554444322222344.7**************.88*********************************************************** PP

   PTS_2-RNA 181 G 181
                 G
  KOO21888.1 274 G 274
                 9 PP

>> APH  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.0       1.3   4.7e+03      21      75 ..     392     441 ..     386     482 .. 0.65
   2 !   22.6   0.3   2.3e-08   8.2e-05     121     209 ..     607     694 ..     558     718 .. 0.65
   3 ?   -1.2   1.1      0.45   1.6e+03      81     161 ..     872     968 ..     807     989 .. 0.65
   4 ?   -4.5   2.4       4.4   1.6e+04     111     111 ..    1119    1119 ..    1051    1217 .. 0.59

  Alignments for each domain:
  == domain 1  score: -2.8 bits;  conditional E-value: 1.3
                 --EEEEEE-TTS-HHHHHHHHHHHHHHHHTT-.B--B-CTTBS-EEETTEEEEEEE CS
         APH  21 gryvlrrnpparaaeeirrevallrlLakagv.pvPevlagdtddeeigllfalie 75 
                 ++++l  +++  a ++++r +a+ r+La a   p   v++     e ig+ ++++e
  KOO21888.1 392 RDMALGTARET-ATARTARSAASARALASASGtPSRSVVD-----ESIGYGAVVLE 441
                 55555556666.6777777777777777655546656666.....66666555554 PP

  == domain 2  score: 22.6 bits;  conditional E-value: 2.3e-08
                 HTCCHHHHHHCHHHCCCGCCTCCHHHHHHHH.......HHHHHHHH--SSS-EEEE-SS-SGGGEEEC..TTEEEEE---TT-EEEECCHHHHCCH CS
         APH 121 qdlellrqlesatarllaselldlleeleeq.......vlaalaallpgelptvllHgDlhpgNllvdpddgrvtGviDfedaglgpplyDlavll 209
                 + l++  ++ s  ++++   ll  le++ +        +la++ +l      +   HgDl+  N+lvd  ++r+  +iDf  ag+  p +D a ++
  KOO21888.1 607 FVLDVPSLVWSDVNCQPLVSLLHQLEAISSGtggddvaWLAEWQPL------RLYQHGDLNAANVLVD-VKDRL-WLIDFAKAGVNMPFHDAAKMV 694
                 4444444444555533333333314444443777644433333333......4589************.66676.7****************9887 PP

  == domain 3  score: -1.2 bits;  conditional E-value: 0.45
                 E-SSHHHHHHHHHHHHHHHHHHC............................CHHCH.-STTTB-SHHCHTCCHHHHHHCHHHCCCGCCTCCHHHHHHHH CS
         APH  81 sllrklsaaqlpellealgefla............................alhqvdpaalpladflaqdlellrqlesatarllaselldlleeleeq 151
                 + ++     +++  ++ ++++l+                            +lh++    + l+ +l++ l  lr+++ +t ++++ +++  + ++++ 
  KOO21888.1 872 TWAE-----HQRMTFDLAARVLKlafqlvakcshrsrsddpteahaavepaDLHAC----NFLFVMLHRSLSTLRYVDLST-DKKRVAWHT-VRRCAD- 958
                 4444.....44455555555555555555577777777777776666666678888....455555555555555555554.344445555.444444. PP

                 HHHHHHHH-- CS
         APH 152 vlaalaallp 161
                 +l++++a++p
  KOO21888.1 959 ALRTVLARRP 968
                 4444444444 PP

  == domain 4  score: -4.5 bits;  conditional E-value: 4.4
                  S CS
         APH  111 a 111 
                  +
  KOO21888.1 1119 D 1119
                  1 PP

>> Kdo  Lipopolysaccharide kinase (Kdo/WaaP) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.0   0.0     2e-07   0.00072     139     174 ..     655     686 ..     651     697 .. 0.88

  Alignments for each domain:
  == domain 1  score: 19.0 bits;  conditional E-value: 2e-07
         Kdo 139 vnHadlyaknillqqeeeeeaeiwliDldkarlrlr 174
                  +H+dl+a n+l++ ++    ++wliD+ ka   ++
  KOO21888.1 655 YQHGDLNAANVLVDVKD----RLWLIDFAKAGVNMP 686
                 59**************9....*********987665 PP

>> Choline_kinase  Choline/ethanolamine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.0   1.2e-05     0.044     147     188 ..     655     695 ..     627     713 .. 0.88

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 1.2e-05
                     EE-S--SGGGEEE.-CTTEEEE--GTT-EEEEHHHHHHHHHH CS
  Choline_kinase 147 fcHnDlqegNillnkeekklvlIDFEYagynyrgfDlanhfi 188
                     + H Dl   N+l+ + +++l+lIDF  ag+n+   D a +++
      KOO21888.1 655 YQHGDLNAANVLV-DVKDRLWLIDFAKAGVNMPFHDAAKMVS 695
                     56***********.99******************99998765 PP

>> DUF5117  Domain of unknown function (DUF5117)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   8.6e-05      0.31       5      79 ..     548     620 ..     545     631 .. 0.88

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 8.6e-05
     DUF5117   5 neqvirFeksgdkkllllrnvsyrnvakdsdaaiakavknsnlepilaafkikaynkdssavvidvtdlfngdnk 79 
                 + +vi F+k +  + +++r+ + r++ + s+  +++a+++ + ++i+    ++ ++k  ++ v+dv +l+ +d++
  KOO21888.1 548 KAMVIVFDKPPAGSAIWVRDERAREYEPPSN--VQAALAQLQQKRIIDVSRVAKRDKFAASFVLDVPSLVWSDVN 620
                 4589**********************87777..67777777777**************999********999985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1353 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       702  (0.0391544); expected 358.6 (0.02)
Passed bias filter:                      483  (0.0269396); expected 358.6 (0.02)
Passed Vit filter:                        51  (0.00284455); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.86u 0.29s 00:00:01.14 Elapsed: 00:00:00.44
# Mc/sec: 9278.73
//
Query:       KOO21889.1  [L=180]
Description: vesicle docking protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.012   15.7   0.0          2    8.6   0.0    2.4  2  Arm       Armadillo/beta-catenin-like repeat
      0.014   15.7   0.0      0.022   15.0   0.0    1.4  1  DUF4355   Domain of unknown function (DUF4355)
      0.046   13.7   0.2       0.08   12.9   0.2    1.4  1  DUF615    Protein of unknown function (DUF615)


Domain annotation for each model (and alignments):
>> Arm  Armadillo/beta-catenin-like repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.6   0.0   0.00033         2      15      40 ..      64      89 ..      57      90 .. 0.89
   2 ?    4.6   0.0    0.0059        35      10      22 ..     135     147 ..     127     158 .. 0.82

  Alignments for each domain:
  == domain 1  score: 8.6 bits;  conditional E-value: 0.00033
                HHHHHHTTTSSHHHHHHHHHHHHHHT CS
         Arm 15 ppLvrLLssedeevqeeAawALsNLa 40
                 +Lv+LL+ ed+ev ++ + + +NL 
  KOO21889.1 64 SVLVKLLREEDTEVMRDTLETFANLF 89
                58**********************95 PP

  == domain 2  score: 4.6 bits;  conditional E-value: 0.0059
                 HTTHHHHHHHHTT CS
         Arm  10 eaGavppLvrLLs 22 
                 ++ av++L+rLL 
  KOO21889.1 135 RYHAVQALMRLLG 147
                 789********96 PP

>> DUF4355  Domain of unknown function (DUF4355)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.0   0.0   3.6e-06     0.022      81     121 ..      59      99 ..      21     103 .. 0.77

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 3.6e-06
     DUF4355  81 ekkipiellnlvvgedaeetkknvetfkelfnkavekavee 121
                 +++  + l++l+  ed+e++ +++etf++lf++ + k++e+
  KOO21889.1  59 DRGGYSVLVKLLREEDTEVMRDTLETFANLFDSELPKGRED 99 
                 55555678999**********************99999886 PP

>> DUF615  Protein of unknown function (DUF615)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.2   1.3e-05      0.08      60     133 ..      63     149 ..      24     163 .. 0.59

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 1.3e-05
      DUF615  60 lqyigkllReadveairaalealkn...........kseeetaalhelerwrdrLiae........ddaaleelleeypevDrqeLRqlirna 133
                 ++ + kllRe+d+e +r++le++ n            +++e +a+h++      L  +        + a  e+++++y++v  q L +l+  a
  KOO21889.1  63 YSVLVKLLREEDTEVMRDTLETFANlfdselpkgreDDAAEVKAMHNVSV---FLTRDgsvsdlmlG-AENEDVYARYHAV--QALMRLLGLA 149
                 56688********************7777766533324444455555443...33333222223322.3356666666664..4444444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (180 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       430  (0.0239835); expected 358.6 (0.02)
Passed bias filter:                      375  (0.0209158); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.41u 0.27s 00:00:00.68 Elapsed: 00:00:00.42
# Mc/sec: 1289.27
//
Query:       KOO21890.1  [L=527]
Description: protein isoform b, partial [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    7.4e-43  146.8  44.9    8.7e-36  123.6  20.4    2.1  2  MFS_1       Major Facilitator Superfamily
    4.6e-06   25.7   6.1       0.01   14.7   6.9    2.8  2  MFS_1_like  MFS_1 like family
    0.00028   19.4   4.5    0.00028   19.4   4.5    1.7  2  MFS_3       Transmembrane secretion effector


Domain annotation for each model (and alignments):
>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  123.6  20.4   1.5e-39   8.7e-36       5     330 ..     109     436 ..     105     447 .. 0.81
   2 !   37.4  16.5   2.2e-13   1.3e-09       2     166 ..     313     490 ..     312     515 .. 0.77

  Alignments for each domain:
  == domain 1  score: 123.6 bits;  conditional E-value: 1.5e-39
       MFS_1   5 aflsalarsilgpalplalaedlgispseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllll.fa......sslw.lllvlrvlq 95 
                  +  ++ +s+l++++p   a++ g+s + +g+ ++++a   +++s+++G l++r G  +v+l+gl + +++ ++l+ fa       ++  + l +r+ q
  KOO21890.1 109 NLSCHAVYSVLSSFYP-PQAKAKGMSDDMVGFTFAIFAGIIFLFSPVAGKLMERRGKVWVYLCGLCIASVS-TILFaFAalvpdgWPFAvWCLTMRIAQ 205
                 5667788999999999.6778899***********************************************.5555475577767778888******** PP

       MFS_1  96 GlgagalfpagaaliadwfpkeergraigllsagfslGailgpllggllasslgWravfyilaivsllafvlfllllpeepperkrkspkeeekgtgpa 194
                 G+g+++  +a++a+ia++ ++ + ++++g+  ++++lG+++gp+lggll + +g+ ++f++l+++ + a++ f   ++  +++r+ k +       +++
  KOO21890.1 206 GVGSALEETAMYAIIAELDTE-NVTFYLGICEVSTGLGYMIGPPLGGLLFHMGGFALPFVFLGALIAPAAIGF-HRFMPHEVNRGGKDE-------ERS 295
                 *****************9998.***********************************************9922.333333333333333.......355 PP

       MFS_1 195 plvpawkallkdpvlwillialllfffgfsg.lltllplylqevlgls.....glllaglllallalvgailallagrlsdr..lgrrrrlllalllll 285
                 + v+ ++ l ++p     ++++++++++ ++ + +l p++    +  s     +   +g+l+++++ +   +++ +g ++++  lg+r+ +l++l+l l
  KOO21890.1 296 ESVS-LRGLTRNP----QVMVMAVAGMIANMdYAFLEPTL--GEHAASvgiaeSPEAIGALFSVAMTAYTLSCPAIGLIARKdrLGPRTVILVGLFLQL 387
                 6777.77788888....66666666668888555555553..222222346695589999999999999999********7766999888888888888 PP

       MFS_1 286 laalglallavt....ssavllllvlvliGfglgfvfpsllalasdlap 330
                 l+++++ + ++       ++ ++++l+l+G+g ++ +++l+  ++ +++
  KOO21890.1 388 LGFMLIGPSPLLqqsrVGTPQVVFALLLFGVGESMSYAPLMDDMMLSCG 436
                 8888888888887766555555669999************999988886 PP

  == domain 2  score: 37.4 bits;  conditional E-value: 2.2e-13
       MFS_1   2 llaaflsalarsilgpalpl.alaedlgispseigllltlyalgaavaslplGrls..drfGrrrvlllglllfalglllll...fa....sslwlllv 90 
                 ++a++++ +++++l p+l + a +     sp +ig l+++ + ++ ++ + +G ++  dr+G+r v+l+gl+l +lg++l+    +      + + +++
  KOO21890.1 313 AVAGMIANMDYAFLEPTLGEhAASVGIAESPEAIGALFSVAMTAYTLSCPAIGLIArkDRLGPRTVILVGLFLQLLGFMLIGpspLLqqsrVGTPQVVF 411
                 578889999999999999988888888899999**********************73358*****************4444444421444545677999 PP

       MFS_1  91 lrvlqGlgagalfpagaaliadwfpk..eergraig.llsagfslGailgpllggllasslgWravfyilaivsllafv 166
                 + +l G+g++++++  +  +     +  ee + a++ l++++fslG +lgpl+g++ +  lg++++  ++a+++ll + 
  KOO21890.1 412 ALLLFGVGESMSYAPLMDDMMLSCGEyaEEASVALApLMASSFSLGQMLGPLVGSASSGRLGFPWACTLMAFLLLLQLA 490
                 99999***999998876444444444333555555427777*************************9999999998744 PP

>> MFS_1_like  MFS_1 like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   6.9   1.7e-06      0.01     232     383 ..     107     263 ..      82     267 .. 0.78
   2 !    6.2   0.0   0.00066       3.9     207     308 ..     289     394 ..     264     467 .. 0.56

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 1.7e-06
  MFS_1_like 232 lvalilgmswgiienFlflYLkelgasntllGslvalgvvaeiplff..faeklleklGhvklliiallayilrfllyaii.......enawlvlpiev 321
                 ++ l ++++++++ +F+    k +g s  ++G + a+   a i+++f  +a kl+e+ G v++ + +l +  +  +l a+          a+++l + +
  KOO21890.1 107 IANLSCHAVYSVLSSFYPPQAKAKGMSDDMVGFTFAIF--AGIIFLFspVAGKLMERRGKVWVYLCGLCIASVSTILFAFAalvpdgwPFAVWCLTMRI 203
                 3445677888888888888889999*******988775..55555553489*************9999998888777777776776666677******* PP

  MFS_1_like 322 LhgisfgllwaaaveyvskiapksleatgqgllsglyfglGralGsliGGllwdlksaiflF 383
                  +g+  +l   a+   ++     +  +++ g+ +  + glG  +G  +GGll+ + + +  F
  KOO21890.1 204 AQGVGSALEETAMYAIIA-ELDTENVTFYLGICEV-STGLGYMIGPPLGGLLFHMGGFALPF 263
                 *******99777777777.5677788******985.69***************876655544 PP

  == domain 2  score: 6.2 bits;  conditional E-value: 0.00066
  MFS_1_like 207 sklkvtkslqvllnilknpeviifllvalilgmswgiienFlflYLkelga..sntllGslvalgvvaeiplfffaekll..eklGhvklliiallayi 301
                  k++ +    +l  + +np+v+++ ++ +i  m ++++e  l  +  ++g   s + +G+l  + + a          +   ++lG +++++++l++  
  KOO21890.1 289 GKDEERSESVSLRGLTRNPQVMVMAVAGMIANMDYAFLEPTLGEHAASVGIaeSPEAIGALFSVAMTAYTLSCPAIGLIArkDRLGPRTVILVGLFLQL 387
                 555555555556666667777666666555555555555555555555554112233333333322222222222222222245666666666666666 PP

  MFS_1_like 302 lrfllya 308
                 l f+l++
  KOO21890.1 388 LGFMLIG 394
                 6666654 PP

>> MFS_3  Transmembrane secretion effector
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.4   4.5   4.6e-08   0.00028      43     173 ..     133     264 ..      99     276 .. 0.80
   2 ?   -2.6   1.3      0.22   1.3e+03      70     186 ..     371     492 ..     339     507 .. 0.51

  Alignments for each domain:
  == domain 1  score: 19.4 bits;  conditional E-value: 4.6e-08
       MFS_3  43 splmvAlvqaaatLPifllsilaGalaDnfdrRkvllavqlllalvsvlltvlaal..gllspwlllaltlligiGaalndPaWqAsvgelvkrrdvpa 139
                 s+ mv +  a  +  ifl+s +aG l +   + +v l + ++  ++++l +  a++  g    +  l++ +  g+G+al + a  A++ el + ++v  
  KOO21890.1 133 SDDMVGFTFAIFAGIIFLFSPVAGKLMERRGKVWVYLCGLCIASVSTILFAFAALVpdGWPFAVWCLTMRIAQGVGSALEETAMYAIIAEL-DTENVTF 230
                 6677777777777789*********************9999765555555555554324433444567778899***************96.8899*** PP

       MFS_3 140 AvaLnsvginiaRsvGPAlgGvlvaavGaalafa 173
                    +  v   +   +GP lgG+l  + G al f 
  KOO21890.1 231 YLGICEVSTGLGYMIGPPLGGLLFHMGGFALPFV 264
                 *************************999998886 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 0.22
       MFS_3  70 DnfdrRkvllavqlllalvsvlltvlaalg...llspwlllaltlligiGaaln.dPa...WqAsvgelvkrrdvpaAvaLnsvginiaRsvGPAlgGv 161
                 D +  R v+l++  l +l+ +l+  + +l+   + +p ++    ll g+G ++  +P       s ge  +   v  A ++ +  + +    GP +g  
  KOO21890.1 371 DRLGPRTVILVGLFLQLLGFMLIGPSPLLQqsrVGTPQVVF-ALLLFGVGESMSyAPLmddMMLSCGEYAEEASVALAPLM-ASSFSLGQMLGPLVGSA 467
                 55555666666666666555555443333300022333333.334555555554123200023344555555555444333.33566666666666666 PP

       MFS_3 162 lvaavGaalafavnalsylalival 186
                     +G  +a ++ a+  l  ++++
  KOO21890.1 468 SSGRLGFPWACTLMAFLLLLQLATI 492
                 6666665555555555555555444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (527 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       668  (0.0372581); expected 358.6 (0.02)
Passed bias filter:                      440  (0.0245412); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.59u 0.26s 00:00:00.85 Elapsed: 00:00:00.42
# Mc/sec: 3742.02
//
Query:       KOO21891.1  [L=555]
Description: hypothetical protein Ctob_000270 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    0.00018   20.8   0.0    0.00034   19.9   0.0    1.3  1  Uso1_p115_head  Uso1 / p115 like vesicle tethering protein, h
  ------ inclusion threshold ------
      0.032   14.1   5.2        3.1    7.8   0.2    3.6  4  Shugoshin_N     Shugoshin N-terminal coiled-coil region
        0.3   11.1  29.5      0.029   14.4   5.4    4.1  3  CENP-F_leu_zip  Leucine-rich repeats of kinetochore protein C
       0.83    8.2  17.1       0.68    8.5   0.9    3.4  3  AAA_13          AAA domain
        1.7    8.4  28.9       0.37   10.6   8.4    3.2  3  KASH_CCD        Coiled-coil region of CCDC155 or KASH
          2    8.3   4.3        7.5    6.4   0.1    3.2  4  CCDC92          Coiled-coil domain of unknown function
        2.9    6.9   8.9       0.34   10.0   0.2    2.8  3  FH2             Formin Homology 2 Domain
          3    8.2   8.3        3.4    8.0   0.1    3.8  4  Tup_N           Tup N-terminal
          3    7.4  11.8       0.73    9.4   0.1    3.3  4  PI3K_P85_iSH2   Phosphatidylinositol 3-kinase regulatory subu
        3.2    7.0  48.5       0.89    8.8  16.4    3.3  3  DUF4407         Domain of unknown function (DUF4407)
        3.2    7.5   7.2          7    6.4   0.7    3.6  3  Lectin_N        Hepatic lectin, N-terminal domain
        3.8    7.9  26.5         15    6.0   4.0    3.2  2  Fez1            Fez1
        7.8    5.2   6.6        1.4    7.7   0.4    2.3  2  Fmp27_WPPW      RNA pol II promoter Fmp27 protein domain
          8    6.5  17.1       0.79    9.7   4.2    4.0  4  FlxA            FlxA-like protein
        8.6    7.3  14.4        9.9    7.1   0.7    4.6  6  Rho_Binding     Rho Binding


Domain annotation for each model (and alignments):
>> Uso1_p115_head  Uso1 / p115 like vesicle tethering protein, head region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.9   0.0   2.8e-07   0.00034     169     230 ..      21      85 ..       8      96 .. 0.83

  Alignments for each domain:
  == domain 1  score: 19.9 bits;  conditional E-value: 2.8e-07
  Uso1_p115_head 169 daRisigylmLLivWlfedpdaVndfLsessnlqsLiqalsqsss...edvlvqGLcaflLGviy 230
                      + i++++l  Li Wl ++ +aV ++L+ ++ l  L++al++  +   edv v+G    lLG++ 
      KOO21891.1  21 SPLIRLSLLQTLIAWLRGSAEAVAQLLAPTTALPALLEALETALAepaEDVHVRGHLGALLGLLL 85 
                     566899**********************************554333348******9999999875 PP

>> Shugoshin_N  Shugoshin N-terminal coiled-coil region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.1       5.8   6.9e+03       9      29 ..     124     144 ..     123     145 .. 0.75
   2 ?    7.8   0.2    0.0026       3.1      22      44 ..     305     327 ..     303     327 .. 0.86
   3 ?   -0.5   0.0      0.99   1.2e+03      19      31 ..     358     370 ..     356     371 .. 0.81
   4 ?    6.4   0.0    0.0069       8.3      24      40 ..     484     500 ..     480     500 .. 0.88

  Alignments for each domain:
  == domain 1  score: -3.0 bits;  conditional E-value: 5.8
  Shugoshin_N   9 NreLAKsNsalslkireleke 29 
                  Nr + +    l+ ++  +e+e
   KOO21891.1 124 NRTISREAAELRVRVEAMETE 144
                  666667777789999999987 PP

  == domain 2  score: 7.8 bits;  conditional E-value: 0.0026
  Shugoshin_N  22 kirelekevseLlsENlnLReli 44 
                   + +l+ e+++L++E+ +LR +i
   KOO21891.1 305 EMADLRREIADLRREIADLRLEI 327
                  567999**************875 PP

  == domain 3  score: -0.5 bits;  conditional E-value: 0.99
  Shugoshin_N  19 lslkirelekevs 31 
                  l +++r+le+ +s
   KOO21891.1 358 LQARCRQLEASLS 370
                  679******9877 PP

  == domain 4  score: 6.4 bits;  conditional E-value: 0.0069
  Shugoshin_N  24 relekevseLlsENlnL 40 
                   +le+e++eL++E+++L
   KOO21891.1 484 AQLEAEIAELRREQDEL 500
                  58************987 PP

>> CENP-F_leu_zip  Leucine-rich repeats of kinetochore protein Cenp-F/LEK1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.1   7.3     0.074        89      13      81 ..     125     193 ..     118     213 .. 0.59
   2 ?   14.4   5.4   2.4e-05     0.029      20     139 ..     279     405 ..     276     406 .. 0.85
   3 ?    4.0   0.8     0.041        48      37      85 ..     453     500 ..     447     509 .. 0.79

  Alignments for each domain:
  == domain 1  score: 3.1 bits;  conditional E-value: 0.074
  CENP-F_leu_zip  13 KeserkadsLkdkvenLerelemseenqekvileaEtskaevetlkeeieelaeelreleldLvalrse 81 
                     + + r+a+ L+ +ve++e el ++     ++   + + ka++e+ ++  +  + +     ++L+alr+e
      KOO21891.1 125 RTISREAAELRVRVEAMETELRIARGAAGELDQLKRQLKAALEAQRQAEQSASDTQLSAAAELAALREE 193
                     667899999999999999999988766555554444444444443333333333333334455555544 PP

  == domain 2  score: 14.4 bits;  conditional E-value: 2.4e-05
  CENP-F_leu_zip  20 dsLkdkvenLerelemseenqekvileaEtskaevetlkeeieela....eelreleldLvalrsekeeLekel...qkkqervseLeslnssle 107
                     + L+  +++L r +  +e+   + +le+ + + e+  l+ ei  l+    +e+   e  L+a     + L+ +    q  q r  +Le++ s+ +
      KOO21891.1 279 AVLQSTIDGLRRAKAALEATAAESVLEMADLRREIADLRREIADLRleieRERASAEEALAARAVAEDALDASTvegQVLQARCRQLEASLSDAT 373
                     67999*************************************9877222145556677788877888888765422277899************* PP

  CENP-F_leu_zip 108 nlleekEqekvqmkeeskaaveeLqtqlkeln 139
                       l  + + +  ++ +s+++v eL++ql el+
      KOO21891.1 374 AALGAAAAAESAVRAASERTVAELEAQLGELQ 405
                     ****************************9986 PP

  == domain 3  score: 4.0 bits;  conditional E-value: 0.041
  CENP-F_leu_zip  37 eenqekvileaEtskaevetlkeeieelaeelreleldLvalrsekeeL 85 
                     +e+++ +i+ea + +  +++l +   e a++  +le+++++lr+e++eL
      KOO21891.1 453 NESNQPAIREAISMQVDASKLASLTAE-AARAAQLEAEIAELRREQDEL 500
                     566677777777778888888777777.788899999999999999998 PP

>> AAA_13  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.5   0.1    0.0095        11     374     463 ..     113     204 ..      27     229 .. 0.55
   2 ?    8.5   0.9   0.00057      0.68     405     462 ..     279     336 ..     274     340 .. 0.92
   3 ?    2.8   3.4      0.03        36      94     194 ..     390     487 ..     374     504 .. 0.68

  Alignments for each domain:
  == domain 1  score: 4.5 bits;  conditional E-value: 0.0095
      AAA_13 374 ineliakhNekvanleeekeeakkklelhlv.....eeleseldeykkkykklekaieklekelkeeeaelkkleeeikeLekqlrdekpaaeei 463
                 +++l+ +  e+   + +e++e+++ +e+ +        +  eld++k   ++l++a+e   ++ + +++ +  +++e ++L+++l+      e  
  KOO21891.1 113 FKALVVAQDETNRTISREAAELRVRVEAMETelriaRGAAGELDQLK---RQLKAALEAQRQAEQSASDTQLSAAAELAALREELSGRAADLEAA 204
                 44444444444444444444444444444432222233344555444...444444444444444444444444555555555554433333333 PP

  == domain 2  score: 8.5 bits;  conditional E-value: 0.00057
      AAA_13 405 eeleseldeykkkykklekaieklekelkeeeaelkkleeeikeLekqlrdekpaaee 462
                 + l+s +d + +++++le+++ +   e+++  +e++ l+ ei++L+ +++ e+ +aee
  KOO21891.1 279 AVLQSTIDGLRRAKAALEATAAESVLEMADLRREIADLRREIADLRLEIERERASAEE 336
                 5578999**********************************************99987 PP

  == domain 3  score: 2.8 bits;  conditional E-value: 0.03
      AAA_13  94 kqekieklkkeikkleekleaaeaqlqkaekekkklekeledeawkkivkkknsalsealkglkyeekfkerllkelkkknrkaaellsdeelkaklet 192
                  ++ +++l+ ++ +l+++l+aa+    +a+++++ l++ ++  a++ i   ++ a s a  ++++ ++  + +++e+ + + +a++l s+  + a++++
  KOO21891.1 390 SERTVAELEAQLGELQAQLRAAQSDGANAREQLQVLQEAAAAAATRAI-GAQEGAPSMA--QVAGVNESNQPAIREAISMQVDASKLASLTAEAARAAQ 485
                 577889999999999999999999999999998888888888888877.4445555533..44443344455555544445555555555555555444 PP

      AAA_13 193 ve 194
                 +e
  KOO21891.1 486 LE 487
                 44 PP

>> KASH_CCD  Coiled-coil region of CCDC155 or KASH
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   8.4   0.00031      0.37      26     139 ..     112     222 ..     109     234 .. 0.84
   2 ?    5.4   0.7     0.012        14      65     118 ..     281     334 ..     275     374 .. 0.60
   3 ?    3.1   5.1     0.061        72      34     150 ..     390     508 ..     379     513 .. 0.74

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00031
    KASH_CCD  26 kLkkavetaeetnakLteeieeLkkklkstQqalqkaklleeEleelkalvkeleEkrarlkaqnkqlekenqsLiakiesLqeenikllaekdelkkk 124
                 + k+ v + +etn  ++ e  eL+ ++  +   l  a+  + El++lk+ +k   E ++++++ ++     + s  a++++L ee+   +a+ ++  + 
  KOO21891.1 112 SFKALVVAQDETNRTISREAAELRVRVEAMETELRIARGAAGELDQLKRQLKAALEAQRQAEQSASD---TQLSAAAELAALREELSGRAADLEAAVRE 207
                 67888999*********************************************99998887765554...35577889999999999999999988888 PP

    KASH_CCD 125 lkeLlkekaeLkkql 139
                 ++ +    a+L  ql
  KOO21891.1 208 SEAMGIGYAQLELQL 222
                 888877777777777 PP

  == domain 2  score: 5.4 bits;  conditional E-value: 0.012
    KASH_CCD  65 leeEleelkalvkeleEkrarlkaqnkqlekenqsLiakiesLqeenikllaek 118
                 l+  ++ l++    le  +a+   +   l +e   L+ +i++L  e+++ +a +
  KOO21891.1 281 LQSTIDGLRRAKAALEATAAESVLEMADLRREIADLRREIADLRLEIERERASA 334
                 444455555555555555555566666666666666666665555555444333 PP

  == domain 3  score: 3.1 bits;  conditional E-value: 0.061
    KASH_CCD  34 aeetnakLteeieeLkkklkstQ....qalqkaklleeEleelkalvkeleEkrarlkaqnkqlekenqsLiakiesLqeenikllaekdelkkklkeL 128
                 +e t a L + + eL+ +l+  Q     a ++ ++l+e  + + + +   +E + ++ aq   ++  nq  i +  s+q++  kl++ +   + + ++L
  KOO21891.1 390 SERTVAELEAQLGELQAQLRAAQsdgaNAREQLQVLQEAAAAAATRAIGAQEGAPSM-AQVAGVNESNQPAIREAISMQVDASKLASLTA-EAARAAQL 486
                 455678888899999999999983332356667778888888888888889988776.56666777777777777799999999987665.56678899 PP

    KASH_CCD 129 lkekaeLkkqlheleellaeke 150
                  +e+aeL+++ +el   +ae++
  KOO21891.1 487 EAEIAELRREQDELLICIAEQD 508
                 9999999999988776666666 PP

>> CCDC92  Coiled-coil domain of unknown function
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   0.0       7.1   8.5e+03      38      53 ..     219     234 ..     219     236 .. 0.81
   2 ?    6.4   0.1    0.0063       7.5      24      45 ..     308     329 ..     303     337 .. 0.83
   3 ?   -3.0   0.1       5.5   6.5e+03      32      40 ..     358     366 ..     355     369 .. 0.80
   4 ?    1.5   0.2      0.22   2.6e+02      25      39 ..     486     500 ..     481     508 .. 0.79

  Alignments for each domain:
  == domain 1  score: -3.4 bits;  conditional E-value: 7.1
      CCDC92  38 dLtfklimeegessqk 53 
                 +L+ +++++e++  q 
  KOO21891.1 219 ELQLEVALRERDAAQA 234
                 7999999999988665 PP

  == domain 2  score: 6.4 bits;  conditional E-value: 0.0063
      CCDC92  24 gLHkEIekLqkenkdLtfklim 45 
                 +L  EI+ L++e  dL  +++ 
  KOO21891.1 308 DLRREIADLRREIADLRLEIER 329
                 6789************999875 PP

  == domain 3  score: -3.0 bits;  conditional E-value: 5.5
      CCDC92  32 LqkenkdLt 40 
                 Lq +++ L+
  KOO21891.1 358 LQARCRQLE 366
                 999999985 PP

  == domain 4  score: 1.5 bits;  conditional E-value: 0.22
      CCDC92  25 LHkEIekLqkenkdL 39 
                 L +EI++L++e  +L
  KOO21891.1 486 LEAEIAELRREQDEL 500
                 557888888888777 PP

>> FH2  Formin Homology 2 Domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.5      0.66   7.9e+02     282     331 ..     128     177 ..     114     198 .. 0.72
   2 ?   10.0   0.2   0.00029      0.34     268     352 ..     296     380 ..     279     388 .. 0.88
   3 ?    1.5   0.2      0.11   1.3e+02     283     329 ..     392     438 ..     384     449 .. 0.74

  Alignments for each domain:
  == domain 1  score: -1.1 bits;  conditional E-value: 0.66
                 HHHHHHHHHHHHHHHHHHHHCCTTSSTT-THHHHHHHHHHHHHHHHHHHH CS
         FH2 282 ekevkklekglkklekelessekkeepsdkflevlkeflkeaeeklkkle 331
                 + e  +l+ +++++e+el+  + ++ + d+++ +lk  l+  ++  ++ +
  KOO21891.1 128 SREAAELRVRVEAMETELRIARGAAGELDQLKRQLKAALEAQRQAEQSAS 177
                 56777888888888888888888777777777777777765555444444 PP

  == domain 2  score: 10.0 bits;  conditional E-value: 0.00029
                 TTHHHCCTS-HHHHHHHHHHHHHHHHHHHHHHHHCCTTSSTT-THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT--T CS
         FH2 268 knvkkaakvnleslekevkklekglkklekelessekkeepsdkflevlkeflkeaeeklkkleeelkeakelvkelveYfgedk 352
                 ++    + +++ +l+ e+ +l++++++l+ e+e+++ ++e+  + ++v ++ l+ ++ + + l++ ++++++ + +++  +g+++
  KOO21891.1 296 EATAAESVLEMADLRREIADLRREIADLRLEIERERASAEEALAARAVAEDALDASTVEGQVLQARCRQLEASLSDATAALGAAA 380
                 555556778999*************************************************************999998887655 PP

  == domain 3  score: 1.5 bits;  conditional E-value: 0.11
                 HHHHHHHHHHHHHHHHHHHCCTTSSTT-THHHHHHHHHHHHHHHHHH CS
         FH2 283 kevkklekglkklekelessekkeepsdkflevlkeflkeaeeklkk 329
                  +v +le +l +l+ +l++ +++  +  + l+vl+e  + a+++   
  KOO21891.1 392 RTVAELEAQLGELQAQLRAAQSDGANAREQLQVLQEAAAAAATRAIG 438
                 56778888888888888888888888888888888888888777655 PP

>> Tup_N  Tup N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.9   0.4      0.23   2.8e+02      26      64 ..     130     168 ..     116     198 .. 0.58
   2 ?    8.0   0.1    0.0029       3.4      21      73 ..     286     338 ..     278     342 .. 0.82
   3 ?   -2.5   0.0       5.7   6.8e+03      48      70 ..     394     405 ..     384     412 .. 0.54
   4 ?    0.5   0.1      0.66   7.9e+02      60      72 ..     484     496 ..     465     500 .. 0.83

  Alignments for each domain:
  == domain 1  score: 1.9 bits;  conditional E-value: 0.23
       Tup_N  26 qkdeyelkiqsqiqElqqirqtlyeLeeahrkikqqYEe 64 
                 +  e+  ++++   El   r +  eL++  r++k + E 
  KOO21891.1 130 EAAELRVRVEAMETELRIARGAAGELDQLKRQLKAALEA 168
                 333444444444455555555555555555555544443 PP

  == domain 2  score: 8.0 bits;  conditional E-value: 0.0029
       Tup_N  21 sslkaqkdeyelkiqsqiqElqqirqtlyeLeeahrkikqqYEeeiarLkaeL 73 
                   l+  k  +e+  ++ + E++ +r+++ +L ++  +++ + E+e a   + L
  KOO21891.1 286 DGLRRAKAALEATAAESVLEMADLRREIADLRREIADLRLEIERERASAEEAL 338
                 557788889999999********************999999999877666655 PP

  == domain 3  score: -2.5 bits;  conditional E-value: 5.7
       Tup_N  48 lyeLeeahrkikqqYEeeiarLk 70 
                 + eLe++             +L+
  KOO21891.1 394 VAELEAQL-----------GELQ 405
                 33444333...........3333 PP

  == domain 4  score: 0.5 bits;  conditional E-value: 0.66
       Tup_N  60 qqYEeeiarLkae 72 
                  q E eia+L++e
  KOO21891.1 484 AQLEAEIAELRRE 496
                 5889999999998 PP

>> PI3K_P85_iSH2  Phosphatidylinositol 3-kinase regulatory subunit P85 inter-SH2 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.0   1.1     0.029        35      73     136 ..     126     191 ..     108     202 .. 0.78
   2 ?    9.4   0.1   0.00061      0.73      90     138 ..     278     326 ..     274     352 .. 0.83
   3 ?   -2.0   0.1         2   2.4e+03     125     137 ..     394     406 ..     356     429 .. 0.58
   4 ?   -1.1   0.1       1.1   1.3e+03     117     144 ..     474     502 ..     456     509 .. 0.61

  Alignments for each domain:
  == domain 1  score: 4.0 bits;  conditional E-value: 0.029
  PI3K_P85_iSH2  73 kfskeaq..ehEieklqenleqlksrlkelhsskekLeedlkqqkeeereleReinalkpellqLq 136
                    ++s+ea   +  +e +++ l+ ++    el + k++L+ +l++q + e++      ++  el  L+
     KOO21891.1 126 TISREAAelRVRVEAMETELRIARGAAGELDQLKRQLKAALEAQRQAEQSASDTQLSAAAELAALR 191
                    4555553225567899999999999999*****************999988777777777887776 PP

  == domain 2  score: 9.4 bits;  conditional E-value: 0.00061
  PI3K_P85_iSH2  90 leqlksrlkelhsskekLeedlkqqkeeereleReinalkpellqLqkr 138
                    l+ l+s ++ l+ +k+ Le    + + e   l Rei  l+ e+  L+++
     KOO21891.1 278 LAVLQSTIDGLRRAKAALEATAAESVLEMADLRREIADLRREIADLRLE 326
                    6679999*************************************99864 PP

  == domain 3  score: -2.0 bits;  conditional E-value: 2
  PI3K_P85_iSH2 125 inalkpellqLqk 137
                    + +l  +l +Lq 
     KOO21891.1 394 VAELEAQLGELQA 406
                    2222222222222 PP

  == domain 4  score: -1.1 bits;  conditional E-value: 1.1
  PI3K_P85_iSH2 117 eereleRe.inalkpellqLqkrkdkyle 144
                     +++ e     +l  e+ +L++++d++l 
     KOO21891.1 474 ASLTAEAArAAQLEAEIAELRREQDELLI 502
                    44444443134577788888888887765 PP

>> DUF4407  Domain of unknown function (DUF4407)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.1  10.7     0.084     1e+02     150     235 ..     121     210 ..     101     215 .. 0.51
   2 ?    8.8  16.4   0.00075      0.89     110     255 ..     164     350 ..     162     361 .. 0.75
   3 ?    5.8  16.9    0.0063       7.5     120     234 ..     379     498 ..     371     508 .. 0.52

  Alignments for each domain:
  == domain 1  score: 2.1 bits;  conditional E-value: 0.084
     DUF4407 150 daaearldalraeaqkeldgtkgtgttgvaGkgpaake.....kkaqldaaqaelaelkakldatarlaalraelaeleaerakeraasqa 235
                 d+ +++++++ ae++  ++    t+    +G   + ++     k a  +++qae  + +++l+a+a+laalr+el++ +a++++++++s+a
  KOO21891.1 121 DETNRTISREAAELRVRVEA-METELRIARGAAGELDQlkrqlKAALEAQRQAEQSASDTQLSAAAELAALREELSGRAADLEAAVRESEA 210
                 33333333333333333332.2333333344444444411133333333444444444444447788888888887777777777776665 PP

  == domain 2  score: 8.8 bits;  conditional E-value: 0.00075
     DUF4407 110 aelaeeqqeeakelkeqlaaaltaelaeleaqia.....................alqaeidaaearldalraeaqkeldgtkgtgttgvaGkgpaake 187
                 a l++++q+e+++ ++ql   + aela+l+++++                     +l+ +++ a +++da++a a + +   ++ g+ gv G+g++a+ 
  KOO21891.1 164 AALEAQRQAEQSASDTQLS--AAAELAALREELSgraadleaavreseamgigyaQLELQLEVALRERDAAQASAVAGA---STGGERGVLGEGDRAQL 257
                 5677788888888888887..555666666666566666666666999*******999999999999999999999555...5889999********** PP

     DUF4407 188 ..........................kkaqldaaqaelaelkakldatarlaalraelaeleaerakeraasqaaaa.addGllarlealdrltk 255
                                             + l +a+a+l++  a+  +  ++a+lr+e+a+l++e+a+ r + ++++a a   l+ar  a d+l +
  KOO21891.1 258 phsdngggndgggeggwvaklavlqsTIDGLRRAKAALEATAAE--SVLEMADLRREIADLRREIADLRLEIERERAsAEEALAARAVAEDALDA 350
                 ****************9999999555555555555555555555..7778888888888888888888887766554045567788888888754 PP

  == domain 3  score: 5.8 bits;  conditional E-value: 0.0063
     DUF4407 120 akelkeqlaaaltaelaeleaqiaalqaeidaaearldalraeaqkeldgtk.......gtgttgvaGkgpaakekkaqldaaqaela.elkakldata 210
                 a+++++ ++aa++ ++aeleaq+ +lqa+++aa+++ +++r+++q   + +        g++ +g +   ++a  ++++  a+++++  +++a+  + a
  KOO21891.1 379 AAAAESAVRAASERTVAELEAQLGELQAQLRAAQSDGANAREQLQVLQEAAAaaatraiGAQ-EGAPSMAQVAGVNESNQPAIREAISmQVDAS--KLA 474
                 55666677777777777777777777777776666666666666544333334443333333.3333344444434444444333333122222..555 PP

     DUF4407 211 rlaalraelaeleaerakeraasq 234
                  l+a  a++a+leae+a+ r++++
  KOO21891.1 475 SLTAEAARAAQLEAEIAELRREQD 498
                 555555555555555555555444 PP

>> Lectin_N  Hepatic lectin, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.3   0.4      0.11   1.3e+02      55      83 ..     185     213 ..     123     242 .. 0.68
   2 ?   -1.8   0.0         2   2.3e+03      64      92 ..     295     323 ..     271     339 .. 0.53
   3 ?    6.4   0.7    0.0058         7      53     109 ..     358     414 ..     351     424 .. 0.91

  Alignments for each domain:
  == domain 1  score: 2.3 bits;  conditional E-value: 0.11
    Lectin_N  55 reLetLketfsnfssstlaeiqalssqgg 83 
                  eL +L+e++s  +++ +a +++ ++ g 
  KOO21891.1 185 AELAALREELSGRAADLEAAVRESEAMGI 213
                 46666666666666666666666655554 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 2
    Lectin_N  64 fsnfssstlaeiqalssqggslsekvtsl 92 
                 ++ ++++   e+ +l+ +  +l ++++ l
  KOO21891.1 295 LEATAAESVLEMADLRREIADLRREIADL 323
                 33333333444444444444444444444 PP

  == domain 3  score: 6.4 bits;  conditional E-value: 0.0058
    Lectin_N  53 LqreLetLketfsnfssstlaeiqalssqggslsekvtsleaklekkqqdlkadhse 109
                 Lq   + L++++s+ ++   a   a s+     +++v+ lea+l + q++l+a +s+
  KOO21891.1 358 LQARCRQLEASLSDATAALGAAAAAESAVRAASERTVAELEAQLGELQAQLRAAQSD 414
                 788889999********99999999999999999*******************9985 PP

>> Fez1  Fez1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.0   4.0     0.013        15      70     146 ..     118     196 ..     101     235 .. 0.56
   2 ?    3.9  14.6     0.053        64      27     151 ..     300     415 ..     288     519 .. 0.86

  Alignments for each domain:
  == domain 1  score: 6.0 bits;  conditional E-value: 0.013
        Fez1  70 vcenelqrk.kseaellrekvekleeelkelreelselsleeeeaalesdeakaqrqe.aeeleelkreverlraeLke 146
                 v ++e +r+ + ea  lr +ve++e+el+  r ++ el + +++ +++ +++++ +q+ +++  +  +e++ lr+eL+ 
  KOO21891.1 118 VAQDETNRTiSREAAELRVRVEAMETELRIARGAAGELDQLKRQLKAALEAQRQAEQSaSDTQLSAAAELAALREELSG 196
                 4556666654455666666677777777666666666555544444333332222222122222333444444444433 PP

  == domain 2  score: 3.9 bits;  conditional E-value: 0.053
        Fez1  27 tqklseivalkaqlrelrakleekeeeikeleesleektlelevcenelqrkkseaellrekvekleeelkelreelselsleeeeaalesdeakaqrq 125
                 ++ + e+  l+ ++ +lr ++ +   ei++ ++s+ee  +   v e+ l+ ++ e ++l+ + ++le+ l++   +l ++++ e+          ++ +
  KOO21891.1 300 AESVLEMADLRREIADLRREIADLRLEIERERASAEEALAARAVAEDALDASTVEGQVLQARCRQLEASLSDATAALGAAAAAES---------AVRAA 389
                 556679999***************************************************************9999998554322.........23334 PP

        Fez1 126 eaeeleelkreverlraeLkeerqkk 151
                 ++++++el++++ +l+a+L+  +   
  KOO21891.1 390 SERTVAELEAQLGELQAQLRAAQSDG 415
                 45677888888888888888776554 PP

>> Fmp27_WPPW  RNA pol II promoter Fmp27 protein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.0   0.9      0.24   2.9e+02     198     254 ..     124     179 ..     111     210 .. 0.64
   2 ?    7.7   0.4    0.0011       1.4     167     240 ..     349     422 ..     306     472 .. 0.82

  Alignments for each domain:
  == domain 1  score: 0.0 bits;  conditional E-value: 0.24
  Fmp27_WPPW 198 elksekedeelkeeieelekeikelkeklefletlledlkeseesseeeeskskels 254
                 + + ++e +el+ ++e++e+e++ ++ +   l++l ++lk+  e++++ e+ s +++
  KOO21891.1 124 NRTISREAAELRVRVEAMETELRIARGAAGELDQLKRQLKAALEAQRQAEQ-SASDT 179
                 344444467788888888888888888888888888888888775442222.22222 PP

  == domain 2  score: 7.7 bits;  conditional E-value: 0.0011
  Fmp27_WPPW 167 dpervqkelleeRleeleeqiekleekleelelksekedeelkeeieelekeikelkeklefletlledlkese 240
                 d  +v  ++l+ R ++le+++++ + +l+ +   ++  ++++++ + ele ++ el+ +l+  ++   + +e+ 
  KOO21891.1 349 DASTVEGQVLQARCRQLEASLSDATAALGAAAAAESAVRAASERTVAELEAQLGELQAQLRAAQSDGANAREQL 422
                 6778999***********************99999998899999999999999999998887776554444444 PP

>> FlxA  FlxA-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.9   0.7      0.38   4.6e+02      61      88 ..     158     180 ..     148     206 .. 0.55
   2 ?    1.6   0.1      0.23   2.8e+02      21      45 ..     308     335 ..     290     391 .. 0.66
   3 ?    9.7   4.2   0.00066      0.79      12      88 ..     355     431 ..     347     447 .. 0.67
   4 ?    0.2   0.1       0.6   7.2e+02      59      73 ..     484     498 ..     466     506 .. 0.64

  Alignments for each domain:
  == domain 1  score: 0.9 bits;  conditional E-value: 0.38
        FlxA  61 lqaQIaqlqqqqaekaqekqqsekeeks 88 
                 l+ Q++     +a +aq++++++ ++++
  KOO21891.1 158 LKRQLK-----AALEAQRQAEQSASDTQ 180
                 333333.....22233333333322222 PP

  == domain 2  score: 1.6 bits;  conditional E-value: 0.23
        FlxA  21 sLqkQiknlqkqLkelses...deltke 45 
                  L+++i++l  ++ +l  +   +  ++e
  KOO21891.1 308 DLRREIADLRREIADLRLEierERASAE 335
                 4444444444444444333322333333 PP

  == domain 3  score: 9.7 bits;  conditional E-value: 0.00066
        FlxA  12 ssgsasqiasLqkQiknlqkqLkelsesdeltkeekkkqqqliqaQIqqlqaQIaqlqqqqaekaqekqqsekeeks 88 
                 ++  +++ ++L+  +++++  L   ++ ++      +    +++aQ+  lqaQ++  q++ a+ +++ q  ++ +++
  KOO21891.1 355 GQVLQARCRQLEASLSDATAALGAAAAAESAVRAASERTVAELEAQLGELQAQLRAAQSDGANAREQLQVLQEAAAA 431
                 5555666667777777777777766666555555455778899**************99988876665544444333 PP

  == domain 4  score: 0.2 bits;  conditional E-value: 0.6
        FlxA  59 qqlqaQIaqlqqqqa 73 
                  ql+a+Ia l ++q+
  KOO21891.1 484 AQLEAEIAELRREQD 498
                 345555555555554 PP

>> Rho_Binding  Rho Binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.1   0.7    0.0083       9.9       7      48 ..     126     167 ..     121     176 .. 0.83
   2 ?    5.5   0.2     0.025        30       9      38 ..     152     180 ..     147     195 .. 0.75
   3 ?   -2.2   0.0       6.6   7.8e+03       7      30 ..     186     209 ..     182     228 .. 0.53
   4 ?    1.7   0.1      0.39   4.7e+02       5      41 ..     306     342 ..     303     353 .. 0.78
   5 ?    4.5   0.5     0.054        65       4      33 ..     393     422 ..     390     432 .. 0.76
   6 ?   -1.0   0.1       2.7   3.2e+03      23      42 ..     477     496 ..     470     505 .. 0.57

  Alignments for each domain:
  == domain 1  score: 7.1 bits;  conditional E-value: 0.0083
  Rho_Binding   7 nlakekeelnkklkkleeelekakeeeeeieklkasyekqLk 48 
                  +++ e  el  +++ +e el+ a+  + e+++lk + +  L+
   KOO21891.1 126 TISREAAELRVRVEAMETELRIARGAAGELDQLKRQLKAALE 167
                  6789999****************9999999999977666665 PP

  == domain 2  score: 5.5 bits;  conditional E-value: 0.025
  Rho_Binding   9 akekeelnkklkkleeelekakeeeeeiek 38 
                  a e ++l+++lk + e+ ++a++++++ ++
   KOO21891.1 152 AGELDQLKRQLKAALEAQRQAEQSASD-TQ 180
                  5799**********9999999854433.33 PP

  == domain 3  score: -2.2 bits;  conditional E-value: 6.6
  Rho_Binding   7 nlakekeelnkklkkleeelekak 30 
                  +la  +eel+ +  +le ++++ +
   KOO21891.1 186 ELAALREELSGRAADLEAAVRESE 209
                  455555566655555555555444 PP

  == domain 4  score: 1.7 bits;  conditional E-value: 0.39
  Rho_Binding   5 venlakekeelnkklkkleeelekakeeeeeieklka 41 
                  +++l+ e  +l +++ +l  e+e++++++ee    +a
   KOO21891.1 306 MADLRREIADLRREIADLRLEIERERASAEEALAARA 342
                  6788999999999999999999999977777666555 PP

  == domain 5  score: 4.5 bits;  conditional E-value: 0.054
  Rho_Binding   4 dvenlakekeelnkklkkleeelekakeee 33 
                  +v++l+ +  el+++l+ ++++ ++a+e+ 
   KOO21891.1 393 TVAELEAQLGELQAQLRAAQSDGANAREQL 422
                  688888999999999999999988888533 PP

  == domain 6  score: -1.0 bits;  conditional E-value: 2.7
  Rho_Binding  23 eeelekakeeeeeieklkas 42 
                    e ++a + e+ei++l+ +
   KOO21891.1 477 TAEAARAAQLEAEIAELRRE 496
                  55555555566666666533 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (555 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1455  (0.0811534); expected 358.6 (0.02)
Passed bias filter:                      499  (0.027832); expected 358.6 (0.02)
Passed Vit filter:                       106  (0.00591221); expected 17.9 (0.001)
Passed Fwd filter:                        66  (0.00368119); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              15  [number of targets reported over threshold]
# CPU time: 1.18u 0.36s 00:00:01.54 Elapsed: 00:00:00.53
# Mc/sec: 3158.49
//
Query:       KOO21892.1  [L=674]
Description: hypothetical protein Ctob_000273 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    2.3e-06   27.3   0.0    8.2e-06   25.5   0.0    1.9  2  S6PP         Sucrose-6F-phosphate phosphohydrolase
    4.9e-06   26.5   0.0       0.12   12.1   0.0    3.6  4  Hydrolase_3  haloacid dehalogenase-like hydrolase


Domain annotation for each model (and alignments):
>> S6PP  Sucrose-6F-phosphate phosphohydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.0      0.65   5.8e+03       4      14 ..     346     356 ..     345     364 .. 0.85
   2 !   25.5   0.0   9.2e-10   8.2e-06      25     197 ..     409     590 ..     396     638 .. 0.74

  Alignments for each domain:
  == domain 1  score: -3.5 bits;  conditional E-value: 0.65
                 EEEE-TBTTTB CS
        S6PP   4 llvsdLDntlv 14 
                 ++ sdLD+t+v
  KOO21892.1 346 AIFSDLDGTIV 356
                 689******99 PP

  == domain 2  score: 25.5 bits;  conditional E-value: 9.2e-10
                 HHHHH.GGGGGEEEEEE-SS-HHHHHHHHHHHT----.SEEEETTTTEEEE..TTEE-HHHHHHHHT.T--H..........HHHHHHHHT-TTEEE-- CS
        S6PP  25 nelleaeerkdvllvfaTGRsldsakellkeknllkP.dvlitsvGteiyygeelvpdkaweeilde.kwdr..........qavvealaklpeLtlQp 111
                  el+ + +++ v +v++T+ +    ++l + ++ll P d+ +++ G+ iy g  +  d+aw++  +e               + +++  +++++  +  
  KOO21892.1 409 VELIAELRARGVIFVIVTAAR---KSTLFEREPLLPPsDAYVCETGSRIYRGGLDALDEAWAKGFEEvSGPLereldvserpEPLWQLFRRFQAEVPGL 504
                 555555677788888888643...344555555555549**********************98766543322111111111144555555555555555 PP

                 GGG-BTTBEEEEE-TTS-THHHHHHHHHHHTTTS-EEEEEETTTEEEEEETT-SHHHHHHHHHHHHT--GGGEEEEE-SGGGHHHH CS
        S6PP 112 eeeqrehKvSyfvdkekaaevlkeleqlLekreldvkviyssgkdlDvlPkraskgeAlryLakkleleleqilvcGdsgnDeell 197
                 + + r++   + vd++  ++v ++l++ +e++  +  +   +    D  P +++kg+A++yL+  +++ +++     d  nD  + 
  KOO21892.1 505 KCDARSYYGCFRVDTQGNTAVEAALRACIEAHLPHGITWAMNLGKYDFFPSASGKGNAVAYLQAVYGVRADESCCLFDDDNDLPMA 590
                 667788888899***************9887655544445556789*************************999999999998886 PP

>> Hydrolase_3  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.0      0.23   2.1e+03      35      81 ..     190     243 ..     190     258 .. 0.61
   2 ?    1.3   0.0     0.027   2.4e+02       1      11 [.     347     357 ..     347     375 .. 0.88
   3 !    8.0   0.0   0.00024       2.1      14      64 ..     402     452 ..     398     460 .. 0.73
   4 !   12.1   0.0   1.4e-05      0.12     171     224 ..     542     595 ..     516     613 .. 0.82

  Alignments for each domain:
  == domain 1  score: -1.8 bits;  conditional E-value: 0.23
                  EEE-SS-HHHHHHHHH.HCCCC.SEEEE....GGGTEE.ECTTTEEEEE--B-H CS
  Hydrolase_3  35 viATGRslravlpvle.elgld.lpvia....lNGali.ddekgkilykstisk 81 
                  ++A++R +r++++ ++ ++++  ++ ++    +N   + ++ek+ +l+ks i+k
   KOO21892.1 190 ILASARRHRDAQREAQqAMQFVrTHKLNhselSNAKAVpKKEKESTLFKSFIDK 243
                  578888888888877733332233333333446666666666666666666665 PP

  == domain 2  score: 1.3 bits;  conditional E-value: 0.027
                  EEEEIIIIIS- CS
  Hydrolase_3   1 ialDlDGTLln 11 
                  i++DlDGT+++
   KOO21892.1 347 IFSDLDGTIVH 357
                  89******986 PP

  == domain 3  score: 8.0 bits;  conditional E-value: 0.00024
                  S---HHHHHHHHHHHHTTSEEEEE-SS-HHHHHHHHHHCCCCSEEEEGGGT CS
  Hydrolase_3  14 kkisektkeaikklkekgikvviATGRslravlpvleelgldlpvialNGa 64 
                  + +se+t+e i++l+++g+ +vi T+   +++ +    l  + ++++  G+
   KOO21892.1 402 GLVSERTVELIAELRARGVIFVIVTAARKSTLFEREPLLPPSDAYVCETGS 452
                  569**********************86555554444444444555555555 PP

  == domain 4  score: 12.1 bits;  conditional E-value: 1.4e-05
                  EEEESTTEEEEEETT-SHHHHHHHHHHHCT--GGGEEEEESSGGGHHHHHHSSE CS
  Hydrolase_3 171 itssskgyleimpkgvsKgtalkklakelnisleeviafGDgeNDieMLeaagl 224
                  ++  + g +++ p    Kg+a+ +l+  +++  +e     D++ND++M e++ +
   KOO21892.1 542 TWAMNLGKYDFFPSASGKGNAVAYLQAVYGVRADESCCLFDDDNDLPMAERCAV 595
                  55566677899999**********************************888765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (674 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       844  (0.0470746); expected 358.6 (0.02)
Passed bias filter:                      589  (0.0328518); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.67u 0.29s 00:00:00.96 Elapsed: 00:00:00.46
# Mc/sec: 4440.43
//
Query:       KOO21893.1  [L=182]
Description: alpha-1,3-mannosyltransferase alg2 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    7.5e-24   84.2   0.0    9.5e-24   83.8   0.0    1.2  1  Glycos_transf_1  Glycosyl transferases group 1
    7.8e-16   58.7   0.0    1.2e-15   58.2   0.0    1.2  1  Glyco_trans_1_4  Glycosyl transferases group 1
  ------ inclusion threshold ------
       0.15   12.0   0.0       0.31   11.1   0.0    1.5  1  Ubiquitin_3      Ubiquitin-like domain


Domain annotation for each model (and alignments):
>> Glycos_transf_1  Glycosyl transferases group 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   83.8   0.0   1.6e-27   9.5e-24      55     155 ..      42     141 ..      15     156 .. 0.95

  Alignments for each domain:
  == domain 1  score: 83.8 bits;  conditional E-value: 1.6e-27
                      .STTHHHHHHHHHHHCTTCGGGEEECCHSSSHHHHHHCESEEEEEESSBSS-HHHHHHHHTT--EEEETTTTHCHHCHTTTSEEEE-TT-HHHH CS
  Glycos_transf_1  55 ngeeekelkklaeelelsdnviflgevsredleellknadifvlpsisEgfGivllEAmaaglpviasnaggpaevvkdgetGllvkpnnaeal 148
                      ++++++el++l+  ++l d v+f  +vs+++  ell+++ ++v++   E+fGiv+lEAmaa  pvia+  ggp+e v++g+tG+l++p+ a+a+
       KOO21893.1  42 QVDYLAELEALVRDAGLTDAVEFRRNVSDDERRELLESCAAVVYTPSFEHFGIVPLEAMAAARPVIAVGLGGPCESVVHGHTGWLCEPT-AAAF 134
                      67899************************************************************************************.**** PP

                      HHHHHHH CS
  Glycos_transf_1 149 aeairkl 155
                      a+a++++
       KOO21893.1 135 ADAFDEV 141
                      **99886 PP

>> Glyco_trans_1_4  Glycosyl transferases group 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.2   0.0   1.9e-19   1.2e-15      44     130 ..      47     140 ..      34     143 .. 0.86

  Alignments for each domain:
  == domain 1  score: 58.2 bits;  conditional E-value: 1.9e-19
                      HHHHHHHT..T-T.TEEEE---..THHHHHHHH-SEEEE.--.---SHHHHHHHHTT-EEEE-TGGGTTT--..TTSSEE--TT-HHHHHHHHH CS
  Glyco_trans_1_4  44 eeleelaa..gleerveftGfv..edlaellaaadvfva.Ps.egfglkllEamaaglpvVatdvggiaevv..gengllvppgdpealaeail 129
                      +ele+l++  gl++ vef   v  ++ +ell+++  +v  Ps e fg++ lEamaa++pv+a  +gg++e v  g +g+l++p  ++a+a+a  
       KOO21893.1  47 AELEALVRdaGLTDAVEFRRNVsdDERRELLESCAAVVYtPSfEHFGIVPLEAMAAARPVIAVGLGGPCESVvhGHTGWLCEP-TAAAFADAFD 139
                      4788888678************8555*******988887366*************************988778********97.59*****986 PP

                      H CS
  Glyco_trans_1_4 130 r 130
                      +
       KOO21893.1 140 E 140
                      5 PP

>> Ubiquitin_3  Ubiquitin-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   5.2e-05      0.31      32      72 ..      21      61 ..      15      79 .. 0.93

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 5.2e-05
                 HHHHHTT-TS-EEEEEEETTTEEEE---TTSBTTTTT--TT CS
  Ubiquitin_3 32 elkkllsieketRLWkkgssegrelLtkpditvqeaglyeg 72
                  l kl+si++  R W+   +e  + L + +  v++agl ++
   KOO21893.1 21 KLTKLVSINRFERGWDGRLQEQVDYLAELEALVRDAGLTDA 61
                 589**********************************9886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (182 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       304  (0.0169558); expected 358.6 (0.02)
Passed bias filter:                      260  (0.0145016); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.39u 0.25s 00:00:00.64 Elapsed: 00:00:00.40
# Mc/sec: 1372.38
//
Query:       KOO21894.1  [L=331]
Description: ankyrin repeat protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.5e-21   75.4   1.7    4.1e-10   39.7   0.1    4.2  4  Ank_5     Ankyrin repeats (many copies)
    1.2e-20   71.4   1.2    1.3e-06   28.3   0.0    4.4  4  Ank_3     Ankyrin repeat
    2.5e-20   72.0   1.8    6.9e-06   26.3   0.0    4.7  5  Ank       Ankyrin repeat
    3.2e-18   66.1   0.0    1.5e-10   41.5   0.0    2.6  2  Ank_2     Ankyrin repeats (3 copies)
    2.3e-15   56.7   0.5    6.1e-08   33.1   0.0    3.3  3  Ank_4     Ankyrin repeats (many copies)


Domain annotation for each model (and alignments):
>> Ank_5  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.7   0.0     0.097   3.5e+02      23      50 ..     130     157 ..     122     158 .. 0.80
   2 !   17.2   0.0   1.3e-06    0.0046      17      44 ..     171     198 ..     162     204 .. 0.87
   3 !   21.2   0.0   7.4e-08   0.00026      13      49 ..     211     248 ..     207     248 .. 0.91
   4 !   39.7   0.1   1.1e-13   4.1e-10       1      56 []     233     288 ..     233     288 .. 0.97

  Alignments for each domain:
  == domain 1  score: 1.7 bits;  conditional E-value: 0.097
       Ank_5  23 AakygaadvvrlLlargadlnltdsrGl 50 
                 A+  + +  v++Ll  ga++n+ + +G+
  KOO21894.1 130 AVGSRDLAEVQRLLRQGANPNMICPDGW 157
                 5666677889999999999999988886 PP

  == domain 2  score: 17.2 bits;  conditional E-value: 1.3e-06
       Ank_5  17 ntpLhvAakygaadvvrlLlargadlnl 44 
                  + Lh+Aa++g +++++lL+a+gad   
  KOO21894.1 171 RSLLHHAAWAGDLNIFKLLVAHGADVES 198
                 489*********************9865 PP

  == domain 3  score: 21.2 bits;  conditional E-value: 7.4e-08
       Ank_5  13 dgggntpLhvAakygaadvvrlLl.argadlnltdsrG 49 
                 +g+g t+Lh+A+ y++ ++v++Ll + g+dln+  ++G
  KOO21894.1 211 RGRGSTCLHHAVMYNRRPIVEYLLdECGCDLNQPGEQG 248
                 67899***************************987765 PP

  == domain 4  score: 39.7 bits;  conditional E-value: 1.1e-13
       Ank_5   1 LlehgpadvnrldgggntpLhvAakygaadvvrlLlargadlnltdsrGltaldlA 56 
                 Ll+++ +d+n + + g+tpLh+Aak + +++v+lLl rga +++ +++ +ta dlA
  KOO21894.1 233 LLDECGCDLNQPGEQGYTPLHLAAKFNLPQLVELLLLRGARTDMLTKDEKTARDLA 288
                 778888************************************************99 PP

>> Ank_3  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.7   0.0     0.016        58       5      30 ..     126     150 ..     124     151 .. 0.85
   2 !   15.7   0.0   4.3e-06     0.015       2      29 ..     170     196 ..     169     198 .. 0.95
   3 !   28.3   0.0   3.5e-10   1.3e-06       2      30 ..     214     242 ..     213     243 .. 0.96
   4 !   18.4   0.0   5.8e-07    0.0021       2      27 ..     248     272 ..     247     275 .. 0.93

  Alignments for each domain:
  == domain 1  score: 4.7 bits;  conditional E-value: 0.016
       Ank_3   5 pLhlAarsgnleivkfLlenkgadvn 30 
                 +L  A+ s +l+ v+ Ll+  ga++n
  KOO21894.1 126 ALWNAVGSRDLAEVQRLLR-QGANPN 150
                 5778899999966******.9****9 PP

  == domain 2  score: 15.7 bits;  conditional E-value: 4.3e-06
       Ank_3   2 GetpLhlAarsgnleivkfLlenkgadv 29 
                 G+++Lh+Aa +g+l+i k+L+  +gadv
  KOO21894.1 170 GRSLLHHAAWAGDLNIFKLLVA-HGADV 196
                 9*********************.9***8 PP

  == domain 3  score: 28.3 bits;  conditional E-value: 3.5e-10
       Ank_3   2 GetpLhlAarsgnleivkfLlenkgadvn 30 
                 G t Lh+A+++++ +iv++Ll+++g+d+n
  KOO21894.1 214 GSTCLHHAVMYNRRPIVEYLLDECGCDLN 242
                 89**************************9 PP

  == domain 4  score: 18.4 bits;  conditional E-value: 5.8e-07
       Ank_3   2 GetpLhlAarsgnleivkfLlenkga 27 
                 G+tpLhlAa+++ + +v++Ll  +ga
  KOO21894.1 248 GYTPLHLAAKFNLPQLVELLLL-RGA 272
                 9********************9.776 PP

>> Ank  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.0   0.0     0.021        76      18      29 ..     139     151 ..     126     152 .. 0.79
   2 !   19.6   0.1   2.5e-07   0.00088       2      30 ..     170     199 ..     170     201 .. 0.91
   3 !   17.6   0.0   1.1e-06    0.0038       2      29 ..     214     243 ..     213     245 .. 0.89
   4 !   26.3   0.0   1.9e-09   6.9e-06       2      30 ..     248     277 ..     247     279 .. 0.88
   5 ?   -2.6   0.0       2.6   9.4e+03       1      11 [.     280     293 ..     280     303 .. 0.71

  Alignments for each domain:
  == domain 1  score: 4.0 bits;  conditional E-value: 0.021
                 HHHHH.TTTSTTC CS
         Ank  18 iklLL.hGAnlna 29 
                 ++ LL +GAn+n+
  KOO21894.1 139 VQRLLrQGANPNM 151
                 4558889****95 PP

  == domain 2  score: 19.6 bits;  conditional E-value: 2.5e-07
                 SBBHHHHHHHHTTHHHHHHHH.TTTSTTCB CS
         Ank   2 GnTPLHlAatngkkriiklLL.hGAnlnal 30 
                 G++ LH Aa+ g+++i klL+ hGA++ ++
  KOO21894.1 170 GRSLLHHAAWAGDLNIFKLLVaHGADVESR 199
                 8899**********************9665 PP

  == domain 3  score: 17.6 bits;  conditional E-value: 1.1e-06
                 SBBHHHHHHHHTTHHHHHHHH..TTTSTTC CS
         Ank   2 GnTPLHlAatngkkriiklLL..hGAnlna 29 
                 G T+LH A++++   i+++LL  +G++ln+
  KOO21894.1 214 GSTCLHHAVMYNRRPIVEYLLdeCGCDLNQ 243
                 89*******777788******988****97 PP

  == domain 4  score: 26.3 bits;  conditional E-value: 1.9e-09
                 SBBHHHHHHHHTTHHHHHHHH.TTTSTTCB CS
         Ank   2 GnTPLHlAatngkkriiklLL.hGAnlnal 30 
                 G+TPLHlAa ++ ++ ++lLL +GA  ++l
  KOO21894.1 248 GYTPLHLAAKFNLPQLVELLLlRGARTDML 277
                 9*****************999899966665 PP

  == domain 5  score: -2.6 bits;  conditional E-value: 2.6
                 TSBBHHHHHH...H CS
         Ank   1 dGnTPLHlAa...t 11 
                 d  T+  lAa    
  KOO21894.1 280 DEKTARDLAApkqE 293
                 67899999994432 PP

>> Ank_2  Ankyrin repeats (3 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.1   0.0   4.7e-08   0.00017      27      81 ..     124     198 ..      75     200 .. 0.79
   2 !   41.5   0.0   4.1e-14   1.5e-10      25      78 ..     213     273 ..     201     280 .. 0.84

  Alignments for each domain:
  == domain 1  score: 22.1 bits;  conditional E-value: 4.7e-08
       Ank_2  27 ktaLhyAakngnleivklLleh.............adnd.........grtpLhyAarsghleivklLlekgadinl 81 
                   aL+ A+ + +l  v+ Ll +                d         gr+ Lh+Aa+ g l+i+klL+ +gad++ 
  KOO21894.1 124 DDALWNAVGSRDLAEVQRLLRQganpnmicpdgwvK--DecrpkdgsvGRSLLHHAAWAGDLNIFKLLVAHGADVES 198
                 578999999988877999998664455555444431..1344445566*********99***************986 PP

  == domain 2  score: 41.5 bits;  conditional E-value: 4.1e-14
       Ank_2  25 ngktaLhyAakngnleivklLleh....ad...ndgrtpLhyAarsghleivklLlekgad 78 
                  g t Lh+A++++ + iv++Ll++    ++   ++g+tpLh+Aa+++ +++v+lLl +ga 
  KOO21894.1 213 RGSTCLHHAVMYNRRPIVEYLLDEcgcdLNqpgEQGYTPLHLAAKFNLPQLVELLLLRGAR 273
                 799*******************9878664477799*********************77875 PP

>> Ank_4  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.0         2   7.1e+03      16      30 ..      40      57 ..      39      59 .. 0.74
   2 !   20.2   0.0   1.8e-07   0.00064       3      55 .]     125     190 ..     123     190 .. 0.92
   3 !   33.1   0.0   1.7e-11   6.1e-08       2      55 .]     215     268 ..     214     268 .. 0.96

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 2
       Ank_4 16 lvrlLl...ekgadinaq 30
                +v+++l   + ++d+++ 
  KOO21894.1 40 AVKSILgtdNLRWDVDRK 57
                578888774559999986 PP

  == domain 2  score: 20.2 bits;  conditional E-value: 1.8e-07
       Ank_4   3 taLhyaaisgrlelvrlLlekgadinaqdnrs.............GetalhiAakrgnveilklLl 55 
                 +aL +a+ s +l  v++Ll +ga++n+ +++              G+++lh+Aa+ g+++i+klL+
  KOO21894.1 125 DALWNAVGSRDLAEVQRLLRQGANPNMICPDGwvkdecrpkdgsvGRSLLHHAAWAGDLNIFKLLV 190
                 68899999999999*****99*******9988899999**************************96 PP

  == domain 3  score: 33.1 bits;  conditional E-value: 1.7e-11
       Ank_4   2 ltaLhyaaisgrlelvrlLlek.gadinaqdnrsGetalhiAakrgnveilklLl 55 
                 +t+Lh+a++++r ++v++Ll+  g d+n    ++G t+lh Aak++ ++ ++lLl
  KOO21894.1 215 STCLHHAVMYNRRPIVEYLLDEcGCDLNQP-GEQGYTPLHLAAKFNLPQLVELLL 268
                 79******************999******8.9*********************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (331 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       496  (0.0276647); expected 358.6 (0.02)
Passed bias filter:                      407  (0.0227007); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.46u 0.26s 00:00:00.72 Elapsed: 00:00:00.42
# Mc/sec: 2394.19
//
Query:       KOO21895.1  [L=447]
Description: phosphatidylinositol-4-phosphate 5 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.4e-77  251.2  65.1    3.3e-10   39.3   3.6   14.4 15  MORN      MORN repeat
  ------ inclusion threshold ------
       0.22   10.5   6.7       0.29   10.1   6.7    1.1  1  DEC-1_N   DEC-1 protein, N-terminal region


Domain annotation for each model (and alignments):
>> MORN  MORN repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.3   0.2   5.8e-05      0.52       1      19 [.      19      37 ..      19      39 .. 0.94
   2 !   26.0   1.3   6.1e-10   5.5e-06       1      21 [.      42      62 ..      42      63 .. 0.99
   3 !   24.3   0.5     2e-09   1.8e-05       2      23 .]      66      87 ..      65      87 .. 0.96
   4 !   26.4   1.4   4.6e-10   4.1e-06       1      23 []      88     110 ..      88     110 .. 0.98
   5 !   39.3   3.6   3.7e-14   3.3e-10       1      23 []     111     133 ..     111     133 .. 0.98
   6 !   27.1   0.0   2.7e-10   2.5e-06       1      20 [.     134     153 ..     134     156 .. 0.92
   7 ?    0.8   0.0     0.061   5.5e+02      16      22 ..     250     256 ..     249     257 .. 0.86
   8 !   17.0   0.8   4.2e-07    0.0037       1      17 [.     258     274 ..     258     277 .. 0.93
   9 !   15.1   0.0   1.8e-06     0.016       1      16 [.     280     295 ..     280     297 .. 0.95
  10 !   13.0   0.0     8e-06     0.072       4      22 ..     307     325 ..     305     326 .. 0.91
  11 !   24.6   0.5   1.6e-09   1.4e-05       1      23 []     327     349 ..     327     349 .. 0.97
  12 !   18.8   0.0   1.2e-07     0.001       1      23 []     350     372 ..     350     372 .. 0.94
  13 !   28.0   0.7   1.4e-10   1.3e-06       1      22 [.     373     394 ..     373     395 .. 0.97
  14 !   16.1   0.0   8.7e-07    0.0078       1      22 [.     396     417 ..     396     418 .. 0.93
  15 ?   -3.5   0.0       1.4   1.3e+04       5      16 ..     423     434 ..     422     437 .. 0.64

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 5.8e-05
        MORN  1 YeGeWknGkrhGkGvytwp 19
                Y+G   +G +hG+G+ t++
  KOO21895.1 19 YSGGLEDGSMHGQGKATFA 37
                99*************9997 PP

  == domain 2  score: 26.0 bits;  conditional E-value: 6.1e-10
        MORN  1 YeGeWknGkrhGkGvytwpdG 21
                YeG++ +Gkr+G+Gv+ +pdG
  KOO21895.1 42 YEGQFNYGKRQGHGVLAYPDG 62
                ********************9 PP

  == domain 3  score: 24.3 bits;  conditional E-value: 2e-09
        MORN  2 eGeWknGkrhGkGvytwpdGdr 23
                eGeW+n++ hG G++ + +G+r
  KOO21895.1 66 EGEWVNDLAHGRGTFFYRSGNR 87
                9*******************97 PP

  == domain 4  score: 26.4 bits;  conditional E-value: 4.6e-10
        MORN   1 YeGeWknGkrhGkGvytwpdGdr 23 
                 YeG+W++Gk  G+G+++++ Gdr
  KOO21895.1  88 YEGQWHDGKITGQGTLIYAGGDR 110
                 *********************97 PP

  == domain 5  score: 39.3 bits;  conditional E-value: 3.7e-14
        MORN   1 YeGeWknGkrhGkGvytwpdGdr 23 
                 YeGeW+ Gk+hG+Gvyt++dGd+
  KOO21895.1 111 YEGEWRSGKMHGYGVYTYADGDT 133
                 *********************96 PP

  == domain 6  score: 27.1 bits;  conditional E-value: 2.7e-10
        MORN   1 YeGeWknGkrhGkGvytwpd 20 
                 YeGeW++++r+GkG++t++ 
  KOO21895.1 134 YEGEWQDDRRNGKGKLTFAP 153
                 ******************96 PP

  == domain 7  score: 0.8 bits;  conditional E-value: 0.061
        MORN  16 ytwpdGd 22 
                 y++pdG+
  KOO21895.1 250 YVYPDGS 256
                 9*****8 PP

  == domain 8  score: 17.0 bits;  conditional E-value: 4.2e-07
        MORN   1 YeGeWknGkrhGkGvyt 17 
                 +eGe+ +G++hG G yt
  KOO21895.1 258 FEGEFIEGRMHGRGSYT 274
                 79**************8 PP

  == domain 9  score: 15.1 bits;  conditional E-value: 1.8e-06
        MORN   1 YeGeWknGkrhGkGvy 16 
                 Y+Ge+++++++G Gv+
  KOO21895.1 280 YDGEFVDNLKEGRGVL 295
                 9*************97 PP

  == domain 10  score: 13.0 bits;  conditional E-value: 8e-06
        MORN   4 eWknGkrhGkGvytwpdGd 22 
                 +W+ ++ hG G++t p+Gd
  KOO21895.1 307 TWVADQVHGLGTLTSPSGD 325
                 7*****************9 PP

  == domain 11  score: 24.6 bits;  conditional E-value: 1.6e-09
        MORN   1 YeGeWknGkrhGkGvytwpdGdr 23 
                 Y G +++Gk+hG+G +++++Gd+
  KOO21895.1 327 YVGAFVGGKKHGIGELHYANGDM 349
                 99*******************96 PP

  == domain 12  score: 18.8 bits;  conditional E-value: 1.2e-07
        MORN   1 YeGeWknGkrhGkGvytwpdGdr 23 
                 + G+W +++ +G+Gv+ +++ +r
  KOO21895.1 350 FRGQWTDDRAEGQGVLLYANNSR 372
                 57******************987 PP

  == domain 13  score: 28.0 bits;  conditional E-value: 1.4e-10
        MORN   1 YeGeWknGkrhGkGvytwpdGd 22 
                 YeG W++++rhG G+++  dG+
  KOO21895.1 373 YEGSWRDNQRHGMGTFHLTDGS 394
                 *********************8 PP

  == domain 14  score: 16.1 bits;  conditional E-value: 8.7e-07
        MORN   1 YeGeWknGkrhGkGvytwpdGd 22 
                 YeG W++G+++GkG +  p+G 
  KOO21895.1 396 YEGLWVHGRKEGKGALLLPSGA 417
                 **************99999996 PP

  == domain 15  score: -3.5 bits;  conditional E-value: 1.4
        MORN   5 WknGkrhGkGvy 16 
                 W +G   G+G +
  KOO21895.1 423 WTQGGISGQGLL 434
                 645545888865 PP

>> DEC-1_N  DEC-1 protein, N-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   6.7   3.3e-05      0.29     107     168 ..     155     215 ..     141     230 .. 0.70

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 3.3e-05
     DEC-1_N 107 qsldgllGa.aapapalaaapp.papapvpddpapapaapqaaafaffnpanldassllgqlla 168
                 ++l +  Ga aap+pa a   p p  ap+    apapaap++     f+  ++  ++llg  + 
  KOO21895.1 155 STLASKGGArAAPMPAAAEVAPaPESAPA---AAPAPAAPSPLVARSFDAQDMYVPALLGPWRL 215
                 55555555325888876543332555554...48999999988889999999999999997655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (447 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       258  (0.0143901); expected 358.6 (0.02)
Passed bias filter:                      195  (0.0108762); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.46u 0.23s 00:00:00.69 Elapsed: 00:00:00.39
# Mc/sec: 3435.51
//
Query:       KOO21896.1  [L=371]
Description: alpha-n-acetylgalactosaminide alpha-2,6-sialyltransferase 5 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      1e-34  120.2   0.0    1.6e-34  119.6   0.0    1.2  1  Glyco_transf_29  Glycosyltransferase family 29 (sialyltransfe


Domain annotation for each model (and alignments):
>> Glyco_transf_29  Glycosyltransferase family 29 (sialyltransferase)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  119.6   0.0   8.7e-39   1.6e-34      48     266 ..     112     323 ..      79     325 .. 0.77

  Alignments for each domain:
  == domain 1  score: 119.6 bits;  conditional E-value: 8.7e-39
  Glyco_transf_29  48 kkskrckrCaVVGngGiLkgsgcGkeIDshdfViRcNlapleg.yeeDVGskttlvtmnpesiiekkfkklkeldkktflvllpfkgrdllwlp 140
                      ++++++ +CaVVG++G Lkgs+ G+ ID+hd V+R+N ap+ g y +DVG++t+l ++    ++      + +++ +t++ l ++++ +l  ++
       KOO21896.1 112 PRRTAFSTCAVVGSSGGLKGSRQGELIDAHDAVVRFNTAPTGGqYAADVGNRTSLWVASH--VP------W-RSQLRTRVGLASEEEAALYCFN 196
                      44567************************************999**************86..55......4.4567888888888888888888 PP

  Glyco_transf_29 141 afltke...kvslraletlekkvkskiklnkekvlilnPdflryvakfwlk..skglkakrpstGllaltlAlhlCdeVslyGFgp.sedse.k 227
                       +l +    ++s ra+++         + ++++ l++ P +   + +  +    k     rpstGl+ + lAl +C  VslyGF   se s  k
       KOO21896.1 197 PWLGTCfneALSGRARDA---------RGRPSTPLLVSPLVTSAMMAIQVSlgGKSSGPVRPSTGLIGVGLALAMCARVSLYGFANvSEPSAmK 281
                      888887322333333222.........23566777777777776555554432455555*************************996665559* PP

  Glyco_transf_29 228 lslHYydkk...kkkavkktavHdmpeEfkllkkLhkegvik 266
                      l +HYyd +   ++ +  k ++Hd +    +l  L++ g+++
       KOO21896.1 282 LCNHYYDCRfnqSRYQSGKMGYHDWKGQWLVLSALVELGALR 323
                      *******954233334444555**999999999999988876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (371 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       263  (0.014669); expected 358.6 (0.02)
Passed bias filter:                      227  (0.0126611); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.23s 00:00:00.68 Elapsed: 00:00:00.40
# Mc/sec: 2815.79
//
Query:       KOO21897.1  [L=315]
Description: mevalonate kinase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      8e-09   35.6  10.0      8e-09   35.6  10.0    3.8  3  GHMP_kinases_N   GHMP kinases N terminal domain
  ------ inclusion threshold ------
       0.09   12.3   0.1       0.19   11.3   0.1    1.5  1  GalKase_gal_bdg  Galactokinase galactose-binding signature


Domain annotation for each model (and alignments):
>> GHMP_kinases_N  GHMP kinases N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.3   0.4      0.14   1.3e+03      23      41 ..      26      37 ..      21      71 .. 0.50
   2 ?   -1.6   0.1      0.36   3.3e+03      21      32 ..      76      87 ..      74     106 .. 0.71
   3 !   35.6  10.0   8.9e-13     8e-09       6      64 ..     162     259 ..     156     261 .. 0.76

  Alignments for each domain:
  == domain 1  score: -0.3 bits;  conditional E-value: 0.14
                    HHHHHHHHHTTEHHHHHHH CS
  GHMP_kinases_N 23 alvaAllallglsleeakl 41
                    a+vaA+l++l         
      KOO21897.1 26 AAVAAALSMLR-------V 37
                    33344444442.......2 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 0.36
                    HHHHHHHHHHHT CS
  GHMP_kinases_N 21 avalvaAllall 32
                    +++lvaAl ++ 
      KOO21897.1 76 IASLVAALSNAS 87
                    566666666655 PP

  == domain 3  score: 35.6 bits;  conditional E-value: 8.9e-13
                     ESSHTTSSSCHHHHHHHHHHHHHHHHT....T.......................EHHHH................HHHHHHHHHHHHHHHHHSH CS
  GHMP_kinases_N   6 seiPvgaGLGSSAAlavalvaAllall....g.......................lslee................aklaleaerlaqggngsgg 57 
                       +P+gaGLGSSAA++val+aAll+l     g                                            + +a+ ae++ + g +sg 
      KOO21897.1 162 AALPLGAGLGSSAAFSVALAAALLQLRlrlfGsgekaggaggpslldgtrvslrvQ---SadrpavcpgeaakaliNGWAYAAECILH-GTPSGL 252
                     457********************986644444667777888888877777554430...14556677777788999************.999999 PP

                     HHHHHHH CS
  GHMP_kinases_N  58 Dvaasvy 64 
                     D+ +s  
      KOO21897.1 253 DNQVSCA 259
                     9977755 PP

>> GalKase_gal_bdg  Galactokinase galactose-binding signature
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.1   2.1e-05      0.19      14      40 ..       7      33 ..       2      40 .. 0.91

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 2.1e-05
                     EEEEEEEEEE--S-TTTT-EEEEEEEE CS
  GalKase_gal_bdg 14 asAPGRvnLiGEHtDYngGfVlpmAie 40
                     asAPG + L GEH    g+   ++A+ 
       KOO21897.1  7 ASAPGKLILFGEHSVVYGYAAVAAALS 33
                     89*************999999999986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (315 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       348  (0.0194099); expected 358.6 (0.02)
Passed bias filter:                      254  (0.014167); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.42u 0.23s 00:00:00.65 Elapsed: 00:00:00.38
# Mc/sec: 2495.78
//
Query:       KOO21898.1  [L=271]
Description: u5 small nuclear ribonucleoprotein 40 kda protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.7e-30  104.6  19.5    2.1e-07   31.5   0.1    6.2  6  WD40         WD domain, G-beta repeat
    4.5e-07   30.1   0.4        3.8    7.9   0.0    4.9  5  ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain
    4.8e-05   22.5   0.4       0.15   11.0   0.0    3.7  4  Ge1_WD40     WD40 region of Ge1, enhancer of mRNA-decapping p
  ------ inclusion threshold ------
        1.1    7.8   4.4        1.6    7.3   0.4    2.9  4  Nup160       Nucleoporin Nup120/160


Domain annotation for each model (and alignments):
>> WD40  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.2   4.1e-06     0.018       3      38 .]      13      49 ..      10      49 .. 0.90
   2 !   31.5   0.1   4.7e-11   2.1e-07       4      38 .]      56      91 ..      53      91 .. 0.91
   3 !   15.2   0.2   6.4e-06     0.029       2      38 .]      96     132 ..      95     132 .. 0.86
   4 !   21.5   0.4   6.6e-08    0.0003       2      38 .]     138     175 ..     137     175 .. 0.89
   5 !   14.7   0.1   9.6e-06     0.043      17      38 .]     204     225 ..     184     225 .. 0.80
   6 !   16.3   0.0   2.9e-06     0.013       5      35 ..     233     264 ..     229     265 .. 0.88

  Alignments for each domain:
  == domain 1  score: 15.9 bits;  conditional E-value: 4.1e-06
                EEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40  3 clrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38
                ++  ++GH + v  + + +dg   +s+s D+t  +Wd
  KOO21898.1 13 NTMNFKGHsNAVLEVHWASDGETAFSCSADKTGALWD 49
                56789***888************99*******88887 PP

  == domain 2  score: 31.5 bits;  conditional E-value: 4.7e-11
                EEEEESSSS.EEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40  4 lrtltGHss.vtslafspdgawlasGsdDgtvriWd 38
                +r ++GH+  v+sl+ s+d++ la++sdD++ r+Wd
  KOO21898.1 56 IRQFRGHTAvVNSLCPSRDSSVLATASDDRSARVWD 91
                789****7757************************9 PP

  == domain 3  score: 15.2 bits;  conditional E-value: 6.4e-06
                 EEEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40   2 qclrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 
                 +c++t+t H   vt+ ++s+dg  l++Gs Dg vr +d
  KOO21898.1  96 TCQHTIT-HpYAVTATCVSHDGMALFTGSLDGRVRWYD 132
                 6999985.9444*88888*****************887 PP

  == domain 4  score: 21.5 bits;  conditional E-value: 6.6e-08
                 EEEEEEESSSS.EEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40   2 qclrtltGHss.vtslafspdgawlasGsdDgtvriWd 38 
                 + +++l GH + v++l+ s+dg+ l+s  +D+ vr Wd
  KOO21898.1 138 SVQHELNGHADiVSGLSLSHDGQSLLSNAMDNVVRCWD 175
                 6799*****6648*************8777*******9 PP

  == domain 5  score: 14.7 bits;  conditional E-value: 9.6e-06
                 EEETTSSEEEEEETTSEEEEEE CS
        WD40  17 afspdgawlasGsdDgtvriWd 38 
                 ++s +g+ +a+Gs D+ v++Wd
  KOO21898.1 204 SWSVNGSQVAAGSADHFVYVWD 225
                 4899*****************9 PP

  == domain 6  score: 16.3 bits;  conditional E-value: 2.9e-06
                 EEEESS.SSEEEEEEETTSSEEEEEETTSEEE CS
        WD40   5 rtltGH.ssvtslafspdgawlasGsdDgtvr 35 
                 ++l GH +sv+ + f+p ++ l+s++ D+ + 
  KOO21898.1 233 YKLPGHtGSVNEVGFHPTQPILCSCGNDRQIF 264
                 5788**888****************99*9985 PP

>> ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.9   0.0   0.00086       3.8      35      81 ..      18      64 ..       5      70 .. 0.87
   2 !    7.2   0.0    0.0014       6.1      22      69 ..      87     135 ..      67     149 .. 0.62
   3 !    4.6   0.0     0.009        40      39      70 ..     148     179 ..     139     190 .. 0.83
   4 ?    3.9   0.0     0.015        66      45      89 ..     204     247 ..     182     250 .. 0.87
   5 ?    3.6   0.0     0.018        80      46      89 ..     205     247 ..     204     268 .. 0.71

  Alignments for each domain:
  == domain 1  score: 7.9 bits;  conditional E-value: 0.00086
  ANAPC4_WD40 35 dkedsevrsLaWkpdgklLavaysdgevrlldaesgkvvhslsvkse 81
                 +++++ v +++W  dg+      +d +  l da++g  +++++ ++ 
   KOO21898.1 18 KGHSNAVLEVHWASDGETAFSCSADKTGALWDAKTGARIRQFRGHTA 64
                 5678899***********999999***************99987765 PP

  == domain 2  score: 7.2 bits;  conditional E-value: 0.0014
  ANAPC4_WD40  22 fRlngqrvwtl......eedkedsevrsLaWkpdgklLavaysdgevrlldaes 69 
                        rvw++      ++ ++   v++ + ++dg  L  +  dg+vr +d   
   KOO21898.1  87 A-----RVWDArvrtcqHTITHPYAVTATCVSHDGMALFTGSLDGRVRWYDLRR 135
                  2.....344443333355566778899999999999999999999999998765 PP

  == domain 3  score: 4.6 bits;  conditional E-value: 0.009
  ANAPC4_WD40  39 sevrsLaWkpdgklLavaysdgevrlldaesg 70 
                    v++L+ ++dg+ L     d+ vr  d++  
   KOO21898.1 148 DIVSGLSLSHDGQSLLSNAMDNVVRCWDVKPY 179
                  56899********************9999765 PP

  == domain 4  score: 3.9 bits;  conditional E-value: 0.015
  ANAPC4_WD40  45 aWkpdgklLavaysdgevrlldaesgkvvhslsvksekavtclgW 89 
                  +W+ +g+  a + +d  v + d+ + ++  +l+ ++ + v+ +g+
   KOO21898.1 204 SWSVNGSQVAAGSADHFVYVWDVGTRRISYKLPGHTGS-VNEVGF 247
                  7************************9999999888874.776665 PP

  == domain 5  score: 3.6 bits;  conditional E-value: 0.018
  ANAPC4_WD40  46 WkpdgklLavaysdgevrlldaesgkvvhslsvksekavtclgW 89 
                  W+ +g+  a + +d  v + d+ + ++  +l+ ++ + v+ +g+
   KOO21898.1 205 WSVNGSQVAAGSADHFVYVWDVGTRRISYKLPGHTGS-VNEVGF 247
                  7778888888888888877777777777777766663.555544 PP

>> Ge1_WD40  WD40 region of Ge1, enhancer of mRNA-decapping protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.1   0.0     0.017        78     183     215 ..      58      91 ..      38      99 .. 0.76
   2 !   11.0   0.0   3.4e-05      0.15     184     216 ..     101     133 ..      91     143 .. 0.81
   3 !    4.8   0.0    0.0025        11     183     226 ..     142     185 ..     135     195 .. 0.78
   4 ?   -1.1   0.0      0.15   6.9e+02     191     216 ..     201     226 ..     191     231 .. 0.85

  Alignments for each domain:
  == domain 1  score: 2.1 bits;  conditional E-value: 0.017
    Ge1_WD40 183 kieehslivea.afspdGtalatasedGevkffq 215
                 +++ h+ +v++   s d  +latas d   + + 
  KOO21898.1  58 QFRGHTAVVNSlCPSRDSSVLATASDDRSARVWD 91 
                 5677776665515699***********9998886 PP

  == domain 2  score: 11.0 bits;  conditional E-value: 3.4e-05
    Ge1_WD40 184 ieehsliveaafspdGtalatasedGevkffqv 216
                 i++   ++ + +s dG al t s dG v+++ +
  KOO21898.1 101 ITHPYAVTATCVSHDGMALFTGSLDGRVRWYDL 133
                 44445799999********************86 PP

  == domain 3  score: 4.8 bits;  conditional E-value: 0.0025
    Ge1_WD40 183 kieehs.liveaafspdGtalatasedGevkffqvyledeeeprC 226
                 +++ h+  ++  ++s dG +l   ++d +v+ + v     + +rC
  KOO21898.1 142 ELNGHAdIVSGLSLSHDGQSLLSNAMDNVVRCWDVKPYA-TADRC 185
                 5677883455669********************996543.34455 PP

  == domain 4  score: -1.1 bits;  conditional E-value: 0.15
    Ge1_WD40 191 veaafspdGtalatasedGevkffqv 216
                    ++s +G  +a+ s+d +v  + v
  KOO21898.1 201 LRPSWSVNGSQVAAGSADHFVYVWDV 226
                 5567899*************999987 PP

>> Nup160  Nucleoporin Nup120/160
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.0      0.23     1e+03     229     255 ..      32      58 ..      20      65 .. 0.79
   2 ?    7.3   0.4   0.00035       1.6     224     259 ..      64     104 ..      45     118 .. 0.78
   3 ?   -0.3   0.0     0.071   3.2e+02     229     248 ..     158     177 ..     104     186 .. 0.54
   4 ?   -0.2   0.0     0.065   2.9e+02     233     252 ..     212     231 ..     204     234 .. 0.84

  Alignments for each domain:
  == domain 1  score: -2.0 bits;  conditional E-value: 0.23
                 TTTEEEEEETT-EEEEEETTTTEEEEE CS
      Nup160 229 gqtylfalsrdgkLrvWnlltgkclat 255
                 +  ++f+ s d++  +W+ +tg ++++
  KOO21898.1  32 DGETAFSCSADKTGALWDAKTGARIRQ 58 
                 77889999***********99988876 PP

  == domain 2  score: 7.3 bits;  conditional E-value: 0.00035
                 ..........TTTEEEEEETT-EEEEEETTTTEEEEEEE-- CS
      Nup160 224 avvei.....gqtylfalsrdgkLrvWnlltgkclatidll 259
                 avv++     ++++l+++s d+  rvW+ +  +c  ti+ +
  KOO21898.1  64 AVVNSlcpsrDSSVLATASDDRSARVWDARVRTCQHTITHP 104
                 44444444569*****************9999988888765 PP

  == domain 3  score: -0.3 bits;  conditional E-value: 0.071
                 TTTEEEEEETT-EEEEEETT CS
      Nup160 229 gqtylfalsrdgkLrvWnll 248
                 + + l++   d+++r W+++
  KOO21898.1 158 DGQSLLSNAMDNVVRCWDVK 177
                 55556666677888888776 PP

  == domain 4  score: -0.2 bits;  conditional E-value: 0.065
                 EEEEETT-EEEEEETTTTEE CS
      Nup160 233 lfalsrdgkLrvWnlltgkc 252
                 ++a s d+++ vW++ t ++
  KOO21898.1 212 VAAGSADHFVYVWDVGTRRI 231
                 677799*********99875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (271 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       254  (0.014167); expected 358.6 (0.02)
Passed bias filter:                      209  (0.0116571); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.44u 0.25s 00:00:00.69 Elapsed: 00:00:00.39
# Mc/sec: 2092.57
//
Query:       KOO21899.1  [L=211]
Description: hypothetical protein Ctob_000278 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (211 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       665  (0.0370907); expected 358.6 (0.02)
Passed bias filter:                      408  (0.0227564); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.42u 0.23s 00:00:00.65 Elapsed: 00:00:00.39
# Mc/sec: 1624.90
//
Query:       KOO21900.1  [L=424]
Description: kynurenine-oxoglutarate transaminase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      4e-52  177.6   0.0    4.6e-52  177.4   0.0    1.0  1  Aminotran_1_2    Aminotransferase class I and II
    0.00093   18.6   0.0     0.0013   18.1   0.0    1.2  1  DegT_DnrJ_EryC1  DegT/DnrJ/EryC1/StrS aminotransferase family
  ------ inclusion threshold ------
      0.015   14.1   0.0      0.022   13.5   0.0    1.2  1  Aminotran_MocR   Alanine-glyoxylate amino-transferase


Domain annotation for each model (and alignments):
>> Aminotran_1_2  Aminotransferase class I and II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  177.4   0.0   7.6e-56   4.6e-52       4     363 .]      28     411 ..      25     411 .. 0.91

  Alignments for each domain:
  == domain 1  score: 177.4 bits;  conditional E-value: 7.6e-56
                    EESSSSSTTSTTSSHHHHHHHHHHHHHHHHHTSTTST-BTTHHHHHHHHHHHHHCTCTTCHTTGGEGEEEESHHHHHHHHHHHHHHHTTT-EEEEE CS
  Aminotran_1_2   4 inLgsneylgdsgkptlpevakaekegalaggtlneygpidglpeleealakflgrseklklkreaavvvgsGagaliealifllklnpgdeilvp 99 
                    + Lg++ ++      +++ v+ +  + a+  +++++y+ + g+p l e l k ++++   k+++ ++v  + Ga++++ +  ++l ++pgde+l+ 
     KOO21900.1  28 VSLGQGFPDWK----PPDFVVAQG-H-AALDEGVHQYTRPAGHPPLVEVLSKRYSSHLHRKIDPLKEVAITVGASQALYLTLQAL-IDPGDEVLLL 116
                    56777777776....555555555.5.79999***********************999999************************.********** PP

                    ESS-THHHHHHHHTTSEEEEEEBEET...TTTEE-HHHHHHHHTTHHCTTETEEEEEEESS-TTT--B--HHHHHHHHHHHHHT.TEEEEEEETTT CS
  Aminotran_1_2 100 dptyasyknilrlsggevvryplyse...edfhldlealeealkeapegnkktkvilvesphNPtGtvatleeleklldlakky.nlllfvDeaYa 191
                    +p ++ y   ++l+gg v+++pl      +++++dl+ale+a+++      ++k++l++sphNPtGt+++le  + +++++ ++ nll+++De+Y 
     KOO21900.1 117 EPCFDLYYGQIKLAGGVVRPVPLAVDvarATWTIDLDALEKAVETG-----RPKLLLLNSPHNPTGTAFPLEVMTGIAAIVARHpNLLVISDEVYK 207
                    ***********************999999***************94.....66******************************************* PP

                    TCBSSSSHTHHHHGGSTTSTT....EEEEEESSSTTSSGGG-EEEEEEEHHHHHHHHHHHHHHTS..SHHHHHHHHHHHHHHHHHHH....HHHHH CS
  Aminotran_1_2 192 gfvfgsldavatranveeepn....llivgslsKafGlaGeRvGyilgnaavvsqlrklsrpfls..ssllqaavaaalsdallkqs....eleem 277
                     +v+ +  a+ +   +++ p     +++++s +K f+++G+  G+++g +++++ ++ l  ++ +  s++ q+a+a+al  a++  +    + e  
     KOO21900.1 208 YTVYAEA-AEHV--HFAALPGmferTVTLSSAGKTFSITGWQAGWCVGPERLIKPIQLLLPFVQFcvSAPIQHALAKALMIADDPYEghanYYEWL 300
                    ****943.3333..3333333335899**********************************988888***********9877766667789***** PP

                    HHHHHHHHHHHHHHHHHSTEEEECCSCSSEEEEEETHH...................CHHHHHHHHHHTCTEEEEEGGGGTS.......TTEEEEE CS
  Aminotran_1_2 278 rqrlqkrrkelrdeLaelglkvlasqsgmflltdlsae...................takelskkLleevgvyvtpgtsftv.......pgrlRit 347
                    ++ + ++rk l d+L+++g+  +  ++g+fl+ d+s++                   ++ +l++ L+ e gv+ +p ++f          + +R+ 
     KOO21900.1 301 KELFRSKRKLLADGLERAGIRPMVGHGGFFLMGDTSRLlvpqkyldertpaapdgvtRDWALCRWLAYEAGVIAIPTSPFFSppnkhlaANYVRFA 396
                    ****************************************9999999999999999999999999***********8888889999***9****** PP

                    CTTS-HHHHHHHHHHH CS
  Aminotran_1_2 348 vAglteeeleelveal 363
                    + + ++++++e++++l
     KOO21900.1 397 F-CKSDDTIREACDRL 411
                    *.************97 PP

>> DegT_DnrJ_EryC1  DegT/DnrJ/EryC1/StrS aminotransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.1   0.0   2.3e-07    0.0013      40     112 ..      89     163 ..      72     203 .. 0.77

  Alignments for each domain:
  == domain 1  score: 18.1 bits;  conditional E-value: 2.3e-07
                      EEEEESSHHHHHHHHHHHTTTTTT-EEEEESSS-THHHHHHHHTT-....EEEEE-B-TTTSSB-GGGCGGG--TTE CS
  DegT_DnrJ_EryC1  40 haiavssGtaAlhlaLralgvgpgdeVIvpsltFvatanavlelga....kpvfvDvdpdtynidpaaieaaitert 112
                       ai+v  +++Al l+L+al ++pgdeV+     F      +  +g     +p  vDv ++t++id +a+e+a+++ +
       KOO21900.1  89 VAITV-GASQALYLTLQAL-IDPGDEVLLLEPCFDLYYGQIKLAGGvvrpVPLAVDVARATWTIDLDALEKAVETGR 163
                      45555.4789********8.99*******9999887777777766522226889*******************8654 PP

>> Aminotran_MocR  Alanine-glyoxylate amino-transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.0   3.7e-06     0.022     159     254 ..     151     239 ..     118     251 .. 0.78

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 3.7e-06
                     -HHHHHHHHHC-TTEEEEEE-SSS-TTT-----HHHHHHHHT---SSTT-EEEEE-TTSS-BS.SSSS----HHHHHHHHT-TTSEEEEEESTTT CS
  Aminotran_MocR 159 dvdaveklvaedasvkGilavpkysnptGetiseevarrlaalkaaapdfrifaddayavhdlvaeedkdanivalardaGhpdrafvlastski 253
                     d+da+ek v +      +l +    nptG+++  ev+  +aa+ a  p++ +  d+ y+ + ++ae+ +++++   a+  G  +r++ l+s+ k 
      KOO21900.1 151 DLDALEKAVETGRPK--LLLLNSPHNPTGTAFPLEVMTGIAAIVARHPNLLVISDEVYK-YTVYAEAAEHVHF---AALPGMFERTVTLSSAGK- 238
                     566666655544433..34444457*********************************8.5677888766655...555788899988888877. PP

                     S CS
  Aminotran_MocR 254 t 254
                     t
      KOO21900.1 239 T 239
                     3 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (424 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       354  (0.0197445); expected 358.6 (0.02)
Passed bias filter:                      345  (0.0192426); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.47u 0.26s 00:00:00.73 Elapsed: 00:00:00.41
# Mc/sec: 3132.98
//
Query:       KOO21901.1  [L=129]
Description: hypothetical protein Ctob_002672 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
     0.0034   17.1   0.0     0.0082   15.9   0.0    1.5  1  Elong-fact-P_C  Elongation factor P, C-terminal
  ------ inclusion threshold ------
      0.024   14.9   0.6        6.2    7.2   0.2    2.2  2  NPCBM_assoc     NPCBM-associated, NEW3 domain of alpha-galact
        0.2   12.0   0.0       0.22   11.8   0.0    1.1  1  Endotoxin_C     delta endotoxin


Domain annotation for each model (and alignments):
>> Elong-fact-P_C  Elongation factor P, C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.0   1.4e-06    0.0082      26      55 ..      13      42 ..      12      42 .. 0.93

  Alignments for each domain:
  == domain 1  score: 15.9 bits;  conditional E-value: 1.4e-06
                    ETTS-EEEEETT--TT-EEEEETTTTEEEE CS
  Elong-fact-P_C 26 letGaevqVPlFIneGdkIkvdTrtgeYvs 55
                    + t ++v+VP+ In Gd ++v   +g+Y s
      KOO21901.1 13 VTTRLTVTVPQGINGGDLVRVAAPDGSYHS 42
                    56889***********************86 PP

>> NPCBM_assoc  NPCBM-associated, NEW3 domain of alpha-galactosidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.2   0.2     0.001       6.2      52      75 ..      12      34 ..      11      36 .. 0.85
   2 ?    6.0   0.0    0.0024        15       3      29 ..      51      77 ..      49      80 .. 0.92

  Alignments for each domain:
  == domain 1  score: 7.2 bits;  conditional E-value: 0.001
  NPCBM_assoc 52 tveatvkVtppagaaaGdyevtak 75
                 +v++ ++Vt+p+g+  Gd  v++ 
   KOO21901.1 12 AVTTRLTVTVPQGINGGD-LVRVA 34
                 689*************99.77765 PP

  == domain 2  score: 6.0 bits;  conditional E-value: 0.0024
  NPCBM_assoc  3 pGetvtltltvtndgtaaatnvslsls 29
                  G++ +++l +t++ +a +++++l+l+
   KOO21901.1 51 SGQQFSVELLATSSSSAEVQKLRLELD 77
                 69*********************9997 PP

>> Endotoxin_C  delta endotoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   3.7e-05      0.22      14      69 ..      15      70 ..       4     103 .. 0.81

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 3.7e-05
                 TTEEEEEEECCCTCEEEEEECTSCEB-EEEEE--CSS-EEEEEEEEEEESS-EEEE CS
  Endotoxin_C 14 sgasvikgpgftGGdlvklstssgllvklrvtvtnstsqrYriRiRYAsnsdtkls 69
                 ++ +v   +g++GGdlv++ + +g + +++v    ++ q++ + +   s+s+++++
   KOO21901.1 15 TRLTVTVPQGINGGDLVRVAAPDGSYHSIMVPGGLASGQQFSVELLATSSSSAEVQ 70
                 567889999**************999999999668999999999988888777765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (129 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       871  (0.0485805); expected 358.6 (0.02)
Passed bias filter:                      488  (0.0272185); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.37u 0.25s 00:00:00.62 Elapsed: 00:00:00.38
# Mc/sec: 1015.05
//
Query:       KOO21902.1  [L=385]
Description: hypothetical protein Ctob_002671 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      4e-12   46.1   0.0    1.9e-11   43.9   0.0    2.3  1  DnaJ      DnaJ domain
  ------ inclusion threshold ------
        0.4   11.1   4.0        1.1    9.7   4.0    1.7  1  DUF5558   Family of unknown function (DUF5558)
        8.4    6.5  11.3       0.28   11.2   4.2    2.1  2  PRIMA1    Proline-rich membrane anchor 1


Domain annotation for each model (and alignments):
>> DnaJ  DnaJ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.9   0.0   3.3e-15   1.9e-11       1      56 [.      19      71 ..      19      76 .. 0.91

  Alignments for each domain:
  == domain 1  score: 43.9 bits;  conditional E-value: 3.3e-15
                HHHHHHTSSTTG-HHHHHHHHHHHHHHHSTTTSCCHHHHHHHHHHHHHHHHHHTSH CS
        DnaJ  1 dyYeiLgvskdasedeIkkaYrklalkyHPDknpkdpeaeekFkeineAyevLsdp 56
                d+Y+ Lgv+++as deI++a++k +lk HPDk     +   +F++++ Aye L  +
  KOO21902.1 19 DPYATLGVARNASPDEIRAAWKKAVLKNHPDKV---GDDGTAFRRVQSAYESLRVE 71
                78*******************************...444689*********99765 PP

>> DUF5558  Family of unknown function (DUF5558)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   4.0   0.00018       1.1       9      45 ..     278     314 ..     271     319 .. 0.80

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 0.00018
     DUF5558   9 herppspslgttpphplpptgsprprqdsaagnseer 45 
                  er     + t pphp+pp+g pr    +a+ +  er
  KOO21902.1 278 DERDVKRDVRTPPPHPMPPAGPPRAPTTTATRQPFER 314
                 5788888999**************9888887766665 PP

>> PRIMA1  Proline-rich membrane anchor 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.6      0.62   3.7e+03      91     115 ..      98     122 ..      88     126 .. 0.77
   2 ?   11.2   4.2   4.6e-05      0.28      10      59 ..     273     323 ..     269     335 .. 0.81

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 0.62
      PRIMA1  91 lrkeenGtsraeyamssrkkkkavd 115
                  r ee  ++  ey      kk+a++
  KOO21902.1  98 WREEERAAAAKEYNERQAAKKEAME 122
                 58899999999**999888888877 PP

  == domain 2  score: 11.2 bits;  conditional E-value: 4.6e-05
      PRIMA1  10 aekvtescqeacqcrrypplppppp.ppppprllsltaaestvsplepwws 59 
                 +e ++++ + + + r++pp p pp  pp +p   ++  +    ++ e+w+ 
  KOO21902.1 273 SEASEDERDVKRDVRTPPPHPMPPAgPPRAPTTTATRQPFERKVEQESWFP 323
                 4667888899999********776526668999999999999999999986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (385 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2827  (0.157678); expected 358.6 (0.02)
Passed bias filter:                      613  (0.0341904); expected 358.6 (0.02)
Passed Vit filter:                       133  (0.00741815); expected 17.9 (0.001)
Passed Fwd filter:                        31  (0.00172904); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.83u 0.31s 00:00:01.13 Elapsed: 00:00:00.43
# Mc/sec: 2700.18
//
Query:       KOO21903.1  [L=1585]
Description: DNA topoisomerase ii [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
   5.5e-123  411.0   0.1   1.1e-122  410.1   0.0    1.5  2  DNA_topoisoIV  DNA gyrase/topoisomerase IV, subunit A
    3.6e-46  156.6   0.1      1e-45  155.2   0.1    1.8  1  TOPRIM_C       C-terminal associated domain of TOPRIM
    7.1e-22   77.7   0.1    1.8e-21   76.4   0.1    1.6  1  DNA_gyraseB    DNA gyrase B
    3.3e-11   43.7   0.0    6.9e-11   42.6   0.0    1.5  1  HATPase_c      Histidine kinase-, DNA gyrase B-, and HSP90-li
    1.8e-07   31.3   0.0      5e-07   29.9   0.0    1.8  1  Toprim         Toprim domain


Domain annotation for each model (and alignments):
>> DNA_topoisoIV  DNA gyrase/topoisomerase IV, subunit A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.9   0.2       1.4   4.9e+03     249     306 ..     333     391 ..     318     392 .. 0.64
   2 !  410.1   0.0    3e-126  1.1e-122       1     426 []     709    1189 ..     709    1189 .. 0.95

  Alignments for each domain:
  == domain 1  score: -3.9 bits;  conditional E-value: 1.4
  DNA_topoisoIV 249 sdirde.sdrgvrivielkrgaseekvleklykktkLessisvnnlvlfdkkpkylslk 306
                      + ++  dr +++  + ++g+++  +  ++ +++kL  + +++n +++ +++++++lk
     KOO21903.1 333 DHVAEQvVDRLLEFIKKKHKGMDKVLKPMHVKNHLKLFINCQIENPAFDSQTKEFMTLK 391
                    36666656666666666666777777777778888888888888877777778777776 PP

  == domain 2  score: 410.1 bits;  conditional E-value: 3e-126
  DNA_topoisoIV    1 RaiPsvrDGlKPvqRriLyamfkl.lnldkkekKvaqlvGev..lgkYhPHGdaslydaivrlaqdfvg..niplldpqGnfGsildgdkd.Aa 88  
                     R+iPsv+DGlKP+qR+i++a+fk  ++l k+e+Kvaql+G+v  +++Yh HG++sl+++i+++aq++vg  n+pll+p G+fG++l+g+kd A+
     KOO21903.1  709 RSIPSVVDGLKPGQRKIMFACFKRgKSLIKNEIKVAQLAGYVseHSAYH-HGEQSLASTIIGMAQTYVGsnNLPLLHPAGQFGTRLQGGKDsAS 801 
                     9**********************999999********************.******************************************** PP

  DNA_topoisoIV   89 aRYietrLskiarellkeidketvdyqenyDgsekEPevlppiiPnlLvnGaeGIavGmatkipphnlkeiidaliallkgeeaellelvlgPd 182 
                     +RYi+t+L +++r l+++ d+ ++dy ++ Dg ++EP++++pi+P++L+nG++GI++G+++++p+hn++++i++l++++ gee++     + P+
     KOO21903.1  802 PRYIFTKLPALTRMLFHPDDDALLDYLQD-DGMSIEPMFYVPILPLVLINGSDGIGTGWSSSVPQHNPRDVIANLKRMMAGEEPH----LMSPW 890 
                     *****************************.****************************************************994....567** PP

  DNA_topoisoIV  183 fptgggiigkeeikeayetgrGkikvrakveieektivitElPigvntskliekieelvkkk.............kik..isdirde.sdrgvr 260 
                     +++++g+i  ++ +  ++t  G++   a+   +e+ ++i+ElP++++t+++++k+ e + ++             k++  + d+r++ +d++v+
     KOO21903.1  891 YRGFNGVIVPDN-RGSFITY-GTVAKDAS---DERVLHISELPVRTWTQEYKDKVLEPMLTGvaaadkdkdakgaKVEqlLDDVREYhTDTKVS 979 
                     ********6666.7899999.99998888...349******************99887755557788899*****7777789*****9999*** PP

  DNA_topoisoIV  261 ivielkr..gaseekvleklykktkLessisvnnlvlfdkk...pkylslkeilkeflevrlevyerrkeyllekleerleilegllkalnkid 349 
                     +++ + +    +e++ +++l+k++kL+s+is++nl+lfd++   ++  s+ +il +f+e+rl++ye+rk +l ekl++++++l+      n ++
     KOO21903.1  980 FTLRYLTaaPLQEAEAKGQLHKQLKLSSTISMTNLTLFDEQgriHRHESVASILASFYELRLSYYEKRKLHLAEKLTAEFDKLD------NRTR 1067
                     ***966645778999999**********************658999**************************************......**** PP

  DNA_topoisoIV  350 evievirkskk.ekkakkeLieelse..............................................eqaeyllemrlrrLtkeevekl 396 
                     ++ +vi++++k ++ +k+ L+++l++                                              + ++yll+m+l++Lt+e+ve+l
     KOO21903.1 1068 FISAVISGELKiSNVKKEVLVATLDKmgykrfepvlkkkraggddededeedttvnvdektgaaaaakasaaRGYDYLLSMPLWSLTAEKVEQL 1161
                     ************************************************************************89******************** PP

  DNA_topoisoIV  397 ekeieelekeikelekllaklkklikeeld 426 
                     ++e++ +e+e+++l ++++k  +l++++ld
     KOO21903.1 1162 RNELRAKETELQALLATTPK--QLWTTDLD 1189
                     ********************..****9986 PP

>> TOPRIM_C  C-terminal associated domain of TOPRIM
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  155.2   0.1   2.8e-49     1e-45       1     128 []     580     707 ..     580     707 .. 0.97

  Alignments for each domain:
  == domain 1  score: 155.2 bits;  conditional E-value: 2.8e-49
    TOPRIM_C   1 FitPivkvtkkkkeeisffslpeyeewkest.enlkkwkikYYkGLgtstskeakeyfsnldkhlkefkleeeedkeaielaFskkkaderkewlkkle 98 
                 F+tPivkv++++ +++ ff+l eye w++s    ++ ++ikYYkGLgtsts+eakeyfs+l +h  +f++e+e  +e+ie aF k+kaderkewl+ ++
  KOO21903.1 580 FVTPIVKVSRNR-QSTPFFTLMEYEAWRRSLgGAASAYTIKYYKGLGTSTSQEAKEYFSDLPRHELTFEWEGEVASELIERAFAKSKADERKEWLRGYN 677
                 9********875.89***************967779*************************************************************** PP

    TOPRIM_C  99 pgtyldkkkkkisysdFvnkeLilfsmadn 128
                 p  y+d++  +isysdFv+keLi++s+adn
  KOO21903.1 678 PAVYVDHSLATISYSDFVDKELIHYSNADN 707
                 ****************************98 PP

>> DNA_gyraseB  DNA gyrase B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   76.4   0.1   4.9e-25   1.8e-21      25     168 ..     298     432 ..     274     438 .. 0.84

  Alignments for each domain:
  == domain 1  score: 76.4 bits;  conditional E-value: 4.9e-25
  DNA_gyraseB  25 gekaveevievevalqwtssysenilsFvNniatpeGGtHvdgfksaltktlneyakkkkllkkkeekisgediregltavvsvkipepqFeGQTKek 122
                  +    ++++ev++a    s++  +++sFvN+iat++GG+Hvd+++++++  l e++kkk +  +  + +++ +++++l ++++++i++p F++QTKe 
   KOO21903.1 298 RV---SDRWEVAIAP---SDDGFQQFSFVNSIATTKGGKHVDHVAEQVVDRLLEFIKKKHKGMD--KVLKPMHVKNHLKLFINCQIENPAFDSQTKEF 387
                  32...4559999999...66677***********************************987545..46****************************** PP

  DNA_gyraseB 123 Lgnsevksivekvvseeleafleenkeeakkilekaveaakareaa 168
                  ++ ++++   + + s+++ + +++   ++++il++a +++++++++
   KOO21903.1 388 MTLKQSAFGSKCAPSDKFFKDVQS-CGVIDSILAFAQSKQNKELKK 432
                  *******999999*****999998.999999999999998887754 PP

>> HATPase_c  Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.6   0.0   1.9e-14   6.9e-11       4      86 ..      86     182 ..      83     233 .. 0.71

  Alignments for each domain:
  == domain 1  score: 42.6 bits;  conditional E-value: 1.9e-14
                 HHHHHHHHHHHHHHHHHHS.TTTEEEEEEEEEETEEEEEEEESSSSSTTHHHT.............GTCSTTCH.....HCSTCHTSTSSSHHHHHHHH CS
   HATPase_c   4 krLrqiisnlvdNavkfat.kageieveikaseddlvisveDnGiGipkedlk.............klfekfsq.....ddstkrggggtGlGlsivkk 83 
                 ++L+++++++v Na++++  ++++  ++ik++ d+ ++sve++G+Gip  ++k             +            d+++k +gg++G+G+++++ 
  KOO21903.1  86 PGLYKCFDEIVVNAADNKVrDDSQTYIKIKVERDKGRLSVENDGKGIPIVMHKehqvyvptlifghL-----LAgsnfnDGEKKLTGGRNGYGAKLANI 179
                 7899************9334444555555554779**************************555532.....33344545*****************77 PP

                 HHH CS
   HATPase_c  84 lve 86 
                 +++
  KOO21903.1 180 FST 182
                 443 PP

>> Toprim  Toprim domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.9   0.0   1.4e-10     5e-07       1      88 [.     462     564 ..     462     581 .. 0.79

  Alignments for each domain:
  == domain 1  score: 29.9 bits;  conditional E-value: 1.4e-10
                 EEEEESSHHHHHHHHHTHT...STEEEEEEESSSSEEEHSTTEEEEE.....ECTTTHHHHHH.........HHHHHHHHSEEEEECSSSHHHHHHHHH CS
      Toprim   1 elvivEgpsdaktiakalg...sgfqavtaslGhildletefkpvye.....eiedkkkvlka.........lkelakradeiilatDpDreGeaiawe 82 
                 +l+i Eg+s+ + + + l    ++++ v++++G++l++ +   p+ +     ei + k++++            +  +r+ +++++tD D +G++i+ +
  KOO21903.1 462 TLIITEGDSAKALAVSGLAvigRDYYGVFPLRGKLLNVRD--APHSTimnnkEISELKQIIGLqqgkdysdpASRKTLRYGHLMIMTDQDHDGSHIKGL 558
                 599*****97666666655777******************..33333444556666666666677888777688888********************** PP

                 HHHHHT CS
      Toprim  83 llevlk 88 
                 ++++l 
  KOO21903.1 559 IINFLH 564
                 *98876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1585 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       979  (0.0546043); expected 358.6 (0.02)
Passed bias filter:                      555  (0.0309554); expected 358.6 (0.02)
Passed Vit filter:                        75  (0.00418317); expected 17.9 (0.001)
Passed Fwd filter:                        28  (0.00156172); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 1.15u 0.35s 00:00:01.50 Elapsed: 00:00:00.44
# Mc/sec: 10903.06
//
Query:       KOO21904.1  [L=157]
Description: actin-related protein 8-like protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      6e-09   35.0   0.0    6.4e-09   34.9   0.0    1.1  1  Actin     Actin


Domain annotation for each model (and alignments):
>> Actin  Actin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.9   0.0   3.6e-13   6.4e-09     303     403 ..      40     150 ..      12     154 .. 0.85

  Alignments for each domain:
  == domain 1  score: 34.9 bits;  conditional E-value: 3.6e-13
       Actin 303 lgiselivaainacd.vdlrpeLlanivvtGGnsllpglteRlekelaql......askgv....kvkiiapee..erkysaWiGGSiLAslgtfqqlw 388
                 + + e iv+a+++ + +++++ L+  i++ GG++ +pgl e le  +a        +   +    ++ +++ +   ++   aW G++ L +l++ + lw
  KOO21904.1  40 MPLDEAIVRAVERGKsTEVKRRLYGTILLIGGAAHTPGLAEYLEWRVACGwklaedS---TegieRIEVTKLPLgtDPESLAWHGAATLPELESGPALW 135
                 567899999999876599**************************9998766664442...3445699999988889*********************** PP

       Actin 389 vskqEYeEqGssvve 403
                 + ++E+   G+ + +
  KOO21904.1 136 ILREEWMQRGALAAR 150
                 *******99987665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (157 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       237  (0.0132188); expected 358.6 (0.02)
Passed bias filter:                      218  (0.0121591); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.25s 00:00:00.62 Elapsed: 00:00:00.39
# Mc/sec: 1200.13
//
Query:       KOO21905.1  [L=972]
Description: kinase-like protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.1e-39  136.5   0.0    1.5e-39  135.9   0.0    1.2  1  Pkinase         Protein kinase domain
    1.7e-12   47.2   0.0    2.6e-12   46.6   0.0    1.2  1  Pkinase_Tyr     Protein tyrosine kinase
    0.00017   21.2   0.0    0.00028   20.5   0.0    1.2  1  Choline_kinase  Choline/ethanolamine kinase
    0.00019   21.5   0.0    0.00066   19.7   0.0    1.9  1  APH             Phosphotransferase enzyme family
    0.00083   18.1   0.2       0.21   10.1   0.1    2.2  2  Actin           Actin
     0.0015   19.0   0.0     0.0027   18.1   0.0    1.4  1  UN_NPL4         Nuclear pore localisation protein NPL4
     0.0036   16.7   0.0     0.0053   16.2   0.0    1.2  1  NPL4            NPL4 family
  ------ inclusion threshold ------
      0.015   14.7   0.0      0.032   13.6   0.0    1.5  1  Kdo             Lipopolysaccharide kinase (Kdo/WaaP) family
       0.19   11.3   0.1        1.3    8.6   0.0    2.0  2  FTA2            Kinetochore Sim4 complex subunit FTA2


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  135.9   0.0   7.8e-43   1.5e-39       1     204 [.     386     583 ..     386     610 .. 0.88

  Alignments for each domain:
  == domain 1  score: 135.9 bits;  conditional E-value: 7.8e-43
                 EEEEEEEEEESSEEEEEEEETTTTEEEEEEEEECHCHCHHHHHHHHHHHHHHHHHSCTTB--EEEEEEESSEEEEEEE--TTEBHHHHHHHHSS..--H CS
     Pkinase   1 yekleklGeGsfGkVykaveketgkivAvKkikkekakkkkekkvlrEikilkklkhpnivrlyevfeekdelylvleyveggeladllerkgs..lse 97 
                 ye++ +lG+G+fG+V+k+++ ++g  +A+K+i++++a  ++   +++E           +v+ly+ f  +++l+l++e +  + l +ll+++++  ls 
  KOO21905.1 386 YEVIGHLGSGTFGQVLKVKQVTNGAVFALKVIRNRRAFRRQ---AQTEAFDA----RALVVQLYDHFVFQSHLCLLFEPLGVN-LLQLLQQNKCigLST 476
                 78899******************************999855...56665444....5669********************976.777777555547999 PP

                 HHHHHHHHHHHHHHHHHHHTTEE-SS-SGGGEEEETTTE..EEE-SGTTSEESSSSCSBCTTTSCGGGS-HHHHTTSCBSHHHHHHHHHHHHHHHHHSS CS
     Pkinase  98 eeakkiakqilegleylHskgiiHrDlKpeNiLidekge..lKitDFGlakelessskltsfvgtseYlAPEvlkeneyskkvDvWslGvilyelltgk 194
                 + ++ ++kq+l+ l  l ++gi+H+DlKpeNiL+++ +   +K++DFG a+ ++++  ++s++ ++ Y++PEvl + +y+ ++D+Ws+G i++el+ g 
  KOO21905.1 477 SLIRYFCKQLLQVLTLLSDMGICHCDLKPENILLQNLQSpaIKLIDFGSACYARQT--VHSYIQSRFYRSPEVLLGLPYGCPIDIWSMGTIVAELFLGL 573
                 9**********************************444356**********99996..6**************************************** PP

                 -STTTSSHHH CS
     Pkinase 195 ppfsgekgke 204
                 p+f+ge++ +
  KOO21905.1 574 PLFPGESSAS 583
                 ****666544 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.6   0.0   1.3e-15   2.6e-12       5     225 ..     390     595 ..     386     605 .. 0.84

  Alignments for each domain:
  == domain 1  score: 46.6 bits;  conditional E-value: 1.3e-15
                  EEEEEESSEEEEEEEEETTTTSSEEEEEEEEESTTSSHHHHHHHHHHHHHHHTS-BTTB--EEEEEESSSSEEEEEE--TTEBHHHHHHHTCTTTSBH CS
  Pkinase_Tyr   5 kklGeGafGkVvegtlkgekekkevkVavKtlkeeateeekeelleeakimkklkhpnivkllgvctkeepllivteyvkgGdLlkfLrkkekekltl 102
                   +lG+G+fG+V + +      ++    a+K+++      +++++ ++a++        +v+l+   + +++l++++e +   +Ll+ L++++   l++
   KOO21905.1 390 GHLGSGTFGQVLKVKQV----TNGAVFALKVIR------NRRAFRRQAQTEAFDARALVVQLYDHFVFQSHLCLLFEPLG-VNLLQLLQQNKCIGLST 476
                  68**********99988....777888999993......35667777776444478889********9999*****9875.48999*****9999999 PP

                  HHHHHHHHHHHHHHHHHHHTTEEEST-SGGGEEEEE..TTEEEE-STTTHEETTTSSEEEETTSSTSG.GGGS-HHHHHHSEEEHHHHHHHHHHHHHH CS
  Pkinase_Tyr 103 kdllsfalqvAkGmeyLeskklvHrdlaarNvLlse..nkvvkisDfGLardiekddeyvkkeeaklp.vkWmapEslkekkftsksDvWsfGvllwE 197
                  + +  f+ q+ + +  L+++ + H dl   N+Ll++  +  +k+ DfG a         +++ ++ +    + +pE+l    +    D+Ws G+++ E
   KOO21905.1 477 SLIRYFCKQLLQVLTLLSDMGICHCDLKPENILLQNlqSPAIKLIDFGSACYA------RQTVHSYIQsRFYRSPEVLLGLPYGCPIDIWSMGTIVAE 568
                  999********************************855779*******88877......33344444404567************************* PP

                  HHTTSSGTTTTSHHHHHHHHHHTTEES- CS
  Pkinase_Tyr 198 iftlgespypglkneevleklkegkrle 225
                  +f  g   +pg +++++ + +++g+  e
   KOO21905.1 569 LFL-GLPLFPGESSASMNTWVETGYMSE 595
                  **8.999999999999999999888654 PP

>> Choline_kinase  Choline/ethanolamine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.5   0.0   1.4e-07   0.00028     141     177 ..     492     529 ..     466     533 .. 0.80

  Alignments for each domain:
  == domain 1  score: 20.5 bits;  conditional E-value: 1.4e-07
                     HGG-EEEE-S--SGGGEEE.-.CTTEEEE--GTT-EEE CS
  Choline_kinase 141 lespvvfcHnDlqegNillnk.eekklvlIDFEYagyn 177
                     l s++  cH+Dl ++Nill++ + + + lIDF  a+y 
      KOO21905.1 492 LLSDMGICHCDLKPENILLQNlQSPAIKLIDFGSACYA 529
                     4567999**********995537889******988885 PP

>> APH  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.7   0.0   3.3e-07   0.00066     137     199 ..     454     529 ..     373     531 .. 0.69

  Alignments for each domain:
  == domain 1  score: 19.7 bits;  conditional E-value: 3.3e-07
                 CGCCTCCHHHHHHHH.........HHHHHHHH--S....SS-EEEE-SS-SGGGEEEC..TTEEEEE---TT-EEE CS
         APH 137 laselldlleeleeq.........vlaalaallpg....elptvllHgDlhpgNllvdpddgrvtGviDfedaglg 199
                 l + l+  l++l +q         +++ + + l+      ++++++H+Dl+p N+l++  + + + +iDf+ a+++
  KOO21905.1 454 LFEPLGVNLLQLLQQnkciglstsLIRYFCKQLLQvltlLSDMGICHCDLKPENILLQNLQSPAIKLIDFGSACYA 529
                 444444455555555666776676444444444444667899****************444444569******985 PP

>> Actin  Actin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.8   0.0    0.0022       4.4       5      39 ..     694     727 ..     691     753 .. 0.83
   2 !   10.1   0.1   0.00011      0.21     122     156 ..     935     969 ..     929     971 .. 0.92

  Alignments for each domain:
  == domain 1  score: 5.8 bits;  conditional E-value: 0.0022
       Actin   5 savVlDnGssttraGyagedaPkavipslvgkprg 39 
                  +vV+ +Gs ++r+G ++  +P  vip +++  r+
  KOO21905.1 694 AVVVIHPGSTSLRIGLGEALTP-RVIPHCIAYRRK 727
                 689************9766666.589999997765 PP

  == domain 2  score: 10.1 bits;  conditional E-value: 0.00011
       Actin 122 kvpalylaksavlsafasgkstglvvDsGasvtsv 156
                 + +a  + ++a ++af +g  +++vvD+G++++sv
  KOO21905.1 935 GLKAALVHEEAACAAFGAGVGSACVVDVGNQRASV 969
                 67899999************************998 PP

>> UN_NPL4  Nuclear pore localisation protein NPL4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.1   0.0   1.4e-06    0.0027       5      78 ..      46     121 ..      43     123 .. 0.84

  Alignments for each domain:
  == domain 1  score: 18.1 bits;  conditional E-value: 1.4e-06
                 -EEEEEETTEEEEEEE-T.TSBHHHHHHHHHHHSS-STTT-EEESSTTCGCCC.SSSSSSCCCTCH--TT-EEEEE CS
     UN_NPL4   5 iiiRvqSadGikRieise.kstlktllekvaeelkfsengfslylernkttel.vssssksvkevglkhGdmlyLk 78 
                 i iRv+  dG kR ++++ + tl++l +  ++e +++ +  +l +     + l ++++ +s+ e+g++hG ml L 
  KOO21905.1  46 ITIRVRTRDGPKRATLPSaDATLADLEKALRQEHRLPVQPGQLCRAPAGAEPLsEADGARSLRELGIVHGAMLHLT 121
                 679************987378****************9955666665555555278999**************996 PP

>> NPL4  NPL4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.0   2.7e-06    0.0053       1      66 [.     200     269 ..     200     272 .. 0.83

  Alignments for each domain:
  == domain 1  score: 16.2 bits;  conditional E-value: 2.7e-06
        NPL4   1 RlgylyGryekydevPlGi.kavveaiyEPpqedeldgltlled....eeekevdeiakklglekvGvift 66 
                 R+++l+Gr e+ ++ P G   + v+ +yEPpq++    +++ +d    +e  + ++iak lgl+ vGv ++
  KOO21905.1 200 RVALLFGRWERATS-PDGKgGVHVDVVYEPPQTCSPTEVSIDDDaagtDELMRAHAIAKGLGLSLVGVAYA 269
                 78899999998765.6665146799****************88767766778899*************986 PP

>> Kdo  Lipopolysaccharide kinase (Kdo/WaaP) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.0   1.6e-05     0.032     108     167 ..     465     524 ..     448     539 .. 0.81

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 1.6e-05
         Kdo 108 llakwae..laeelkrallkavgrliaklhragvnHadlyaknillqqeeeeeaeiwliDld 167
                 ll++ +   l+ +l r   k++ ++   l ++g++H dl + nillq+ +     i liD+ 
  KOO21905.1 465 LLQQNKCigLSTSLIRYFCKQLLQVLTLLSDMGICHCDLKPENILLQNLQ--SPAIKLIDFG 524
                 5555444566677777777888888888999*****************98..99999***95 PP

>> FTA2  Kinetochore Sim4 complex subunit FTA2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.6   0.0   0.00067       1.3      22      65 ..     384     429 ..     377     451 .. 0.68
   2 ?    0.0   0.0      0.27   5.4e+02     178     206 ..     483     511 ..     469     527 .. 0.79

  Alignments for each domain:
  == domain 1  score: 8.6 bits;  conditional E-value: 0.00067
        FTA2  22 kdiefleyLgkglhsiVlkvk..irgkeYALKlFrfleaeeleeae 65 
                  ++e + +Lg+g+ ++Vlkvk   +g ++ALK+ r+ +a   + ++
  KOO21905.1 384 TEYEVIGHLGSGTFGQVLKVKqvTNGAVFALKVIRNRRAFRRQAQT 429
                 47899***************9444667*****99988554333222 PP

  == domain 2  score: 0.0 bits;  conditional E-value: 0.27
        FTA2 178 lpkllrdlkklhklgIvvrDlkeenyidg 206
                  ++ll+ l  l   gI + Dlk+en++  
  KOO21905.1 483 CKQLLQVLTLLSDMGICHCDLKPENILLQ 511
                 5789999999**************98744 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (972 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       761  (0.0424452); expected 358.6 (0.02)
Passed bias filter:                      453  (0.0252663); expected 358.6 (0.02)
Passed Vit filter:                        54  (0.00301188); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.73u 0.29s 00:00:01.02 Elapsed: 00:00:00.42
# Mc/sec: 6997.00
//
Query:       KOO21906.1  [L=1836]
Description: myosin family protein with dil domain [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
     1e-205  685.0   0.2   6.9e-205  682.2   0.2    1.9  1  Myosin_head  Myosin head (motor domain)
    4.4e-73  242.5  13.9    1.7e-16   60.6   0.0    8.4  8  PH           PH domain
    7.2e-21   74.3  16.2    0.00016   21.9   0.1    7.4  6  PH_8         Pleckstrin homology domain
    1.4e-19   70.1   0.0     0.0033   17.5   0.0    6.4  6  PH_3         PH domain
    1.3e-13   51.2  19.8     0.0014   19.0   0.7    8.2  7  PH_11        Pleckstrin homology domain
    2.6e-07   30.4   0.1    7.1e-07   29.0   0.1    1.8  1  PDZ_6        PDZ domain
    1.3e-06   28.7   0.0    2.7e-06   27.6   0.0    1.5  1  PDZ          PDZ domain
    9.2e-06   26.0   0.8        0.6   10.5   0.1    6.1  6  PH_2         Plant pleckstrin homology-like region
    4.5e-05   23.7   0.1       0.22   11.8   0.0    4.4  4  PH_6         Pleckstrin homology domain
     0.0012   19.2   0.0     0.0027   18.0   0.0    1.6  1  PDZ_2        PDZ domain
     0.0042   16.9   5.2       0.95    9.3   0.1    5.2  5  PH_13        Pleckstrin homology domain
  ------ inclusion threshold ------
       0.14   12.4   0.0        0.5   10.6   0.0    1.9  1  AAA_22       AAA domain


Domain annotation for each model (and alignments):
>> Myosin_head  Myosin head (motor domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  682.2   0.2  4.6e-208  6.9e-205       3     677 .]      67     748 ..      65     748 .. 0.94

  Alignments for each domain:
  == domain 1  score: 682.2 bits;  conditional E-value: 4.6e-208
                  BGCGSSS-SHHHHHHHHHHHHHTT--EEEETTEEEEE--SS--STSSHHHHHHHTTS-GGGSSSSHHHHHHHHHHHHHHHTSEEEEEEESSTTSSHHH CS
  Myosin_head   3 dlveLsllneasvlenlkkRykkdliYtysglvlvavnPykklkiysedvikaykgkkreelpPHifaiadeayrslledkenqsilisGEsGAGKte 100
                  d++ L +++e+++l n+k R++++liYty++++l+++nP++ l+iy +d ++ y +k     +PH +a+ +eay++l++ ++nq++++sGEsGAGKte
   KOO21906.1  67 DNCYLIHISESTILANMKARFANKLIYTYTSNILIVLNPFQPLPIYGNDKMQPYVSKPLGIAEPHTYAMGEEAYKTLVKTQRNQALVVSGESGAGKTE 164
                  8999********************************************************************************************** PP

                  HHHHHHHHHHHHSSSSSCTCTTHHHHHHHHHHHHHHHHHEEEESSETTEESSEEEEEEEEETTSSEEEEEEEEECE-GGGGT---TT--SBHHHHHHH CS
  Myosin_head 101 atKkvlqylasvaeskekveeeeleekilqsnPilEafGnAktvrndnssRFGKfieiefdakgkiagakietYLLEksRvvkqakeERnyHiFYqll 198
                  + K+++++la  ++s++    + + + +l +nP+lEa+GnAkt+rn+nssRFGKf++i  +++g + ga  ++YLLEksRv +q+++ERnyH+FYql+
   KOO21906.1 165 TNKHLMTFLAWRSKSET--VGNDIAQVMLLANPVLEAVGNAKTMRNNNSSRFGKFVKIAMSERGGVLGAVTNKYLLEKSRVPFQSAGERNYHVFYQLV 260
                  **********9998888..5689*************************************************************************** PP

                  HCSTHHHHHHTT--.TCCGSTTTTTTSSSSBTTS-HHHHHHHHHHHHHHHT--HHHHHHHHHHHHHHHHHCTSSEEEECTTSSE.............. CS
  Myosin_head 199 agaseeekkelkle.dvkdyaylsqsgeltvdgiddseefketkkaldilglseeeqkeifrivaailhlGniefkkeakdeqa.............. 281
                  ag +   k +l l+  +++++yl+qsg+++v+g++d+++f+ +++a+   ++  ++q++if++ aa+lhlGni+f+  +++++               
   KOO21906.1 261 AGHKG--KAALALDkGASSFHYLNQSGTTEVKGVNDAADFERLCSAMASTNMGGSDQEDIFKLFAALLHLGNIKFNPGSDEASIssatsaalakggra 356
                  **875..6789999789**********************************************************98776543234566788888998 PP

                  ....EESSHHHHHHHHHHH......TS-HHHHHHHHHSEEEEETTEEEEEE-BHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSS-S-SEEEEEE CS
  Myosin_head 282 ....vledeeklekaaell......gvdaeelekalvkrriktgkevvskalnveqaevardalakaiyerlFdwlverinkslekkkeekksfiGvL 369
                        + +++l + a+l+        ++++l+k l++r+++t  e+++++++  +a+ ardalak +y+rlFd++verin s++  ++e+++fiG+L
   KOO21906.1 357 lparRHPPDRRLPMSASLIaraipaSSQVSNLQKCLCERTMTTMGETIATKQTPAKAALARDALAKSCYARLFDFIVERINLSMRGAAKETSTFIGLL 454
                  8877333344454445444111121457889******************************************************************* PP

                  EEE-B---SSB-HHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHTTSSGCGS-GGGCCHHHHHHHHSSSTSHHHHHHHHHTSTTS-HHHHHHHHHHHHT CS
  Myosin_head 370 DiaGFEifeknsFEqlcinyvnEkLqqlFnelvlklEqeeYvrEgiewkfidfgldnqaiidLiekkplGilslLdeecllpkatdetfleklvkafs 467
                  D++GFE f +n++Eqlcin++nEkLqq+F + v+k+E + Y  E++ w++i++  dnq +idLiek p+G++ lLde c+ pk +d+ f+  ++++  
   KOO21906.1 455 DVYGFESFAINTYEQLCINFANEKLQQFFLRFVFKAEEDLYRSENVAWTKIEY-QDNQGCIDLIEKMPTGVMRLLDETCKKPKVEDSAFCLSVAETLR 551
                  *****************************************************.8******************************************* PP

                  TSTTEEETTS.....TTTTTEEEEEETTCEEEEE-TTHHHHHH----HHHHHHHHTSSSHHHHHHCCSHCHB--.........CSSSECCCCCSBHHH CS
  Myosin_head 468 khakfeksrl.....kkgeakFiikHyAgkveYevegfleKnkDtlnedlvellksskkkllaelfkeeekeakaeakksekkkkkkkkkkkfktvgs 560
                  ++  f+ +r       + +++F+i+H+Ag+v+Y  egf +Kn+Dtl++d v+l++ s + +l++lf e+               +k kk ++f++v+ 
   KOO21906.1 552 RNDFFMDARGaghknYRPDEAFAIRHFAGDVCYVGEGFCDKNNDTLHSDFVALCSGSGHGVLRQLFAED---------------AKVKKANTFNSVSR 634
                  ***99999876776678899***********************************************93...............345566789***** PP

                  HHHHHHHHHHHHHCTSEEEEEEEE-SSSS--TT---HHHHHHHHHHTTHHHHHHHHHHSSSEEEEHHHHHHHHGGGSTTSS-SS.SSSHHHHHHHHHH CS
  Myosin_head 561 kfkeslaeLmktlestnphfvRCikpnekkkakkldeslvleqlrclGvlegirirraGfpnRitfeefvqrYkllakkelkkllkedakkaveailk 658
                  +f ++l++Lm+ l+st++hf+RCikpn++ +a k+  slvl+qlrc+G++++++++   +p+Ri ++++++rY+  +++ + kl   +   ++ea+  
   KOO21906.1 635 RFINDLNTLMEDLNSTKAHFIRCIKPNKELEAFKFTPSLVLTQLRCSGTIDAVQLMAGAYPTRIPYDSIYSRYASQMPDFVRKL---EPPLFCEALAL 729
                  *******************************************************************************98555...8899******* PP

                  HTTS-GCGEEECSSEEEET CS
  Myosin_head 659 eleldkeeykiGktKiFfr 677
                  +le++++++ +G+tKiFf+
   KOO21906.1 730 ALEISNKHFALGRTKIFFK 748
                  ******************8 PP

>> PH  PH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.4   0.0     0.071   1.1e+02      15     102 ..     906     983 ..     890     986 .. 0.83
   2 !   29.5   0.0   5.4e-10   8.1e-07       2      87 ..     993    1069 ..     992    1092 .. 0.77
   3 !   21.5   0.0   1.7e-07   0.00025       2     102 ..    1111    1208 ..    1110    1211 .. 0.87
   4 !   41.5   0.4     1e-13   1.5e-10       2     103 ..    1226    1332 ..    1225    1334 .. 0.92
   5 ?    1.7   0.1      0.24   3.7e+02      80     103 ..    1431    1454 ..    1422    1456 .. 0.86
   6 !   60.6   0.0   1.1e-19   1.7e-16       2     103 ..    1463    1557 ..    1462    1559 .. 0.88
   7 !   47.6   0.2   1.2e-15   1.9e-12       3     102 ..    1604    1706 ..    1602    1709 .. 0.83
   8 !   37.9   0.1   1.4e-12   2.1e-09       2     101 ..    1730    1824 ..    1729    1828 .. 0.93

  Alignments for each domain:
  == domain 1  score: 3.4 bits;  conditional E-value: 0.071
                 SCSEEEEEEEEETTEEEEESSTTCTTESSEEEEEESTTEEEEEEECTTSSSSTSEEEEEESTSSSTEEEEEEESSHHHHHHHHHHHHH CS
          PH  15 kkswkkrwfvLkdsellyykndksekdkepkgsislsncevvevvatedpkrkfcfelriverngsrtyllqasseeerkeWikaiqs 102
                 + +w++  f L ++++l +++    +    +g+i+++ +  v+    + p+    +e+ ++    s+t++l+  + + +++W + + +
  KOO21906.1 906 R-TWDEFTFRLYSNRVLTFEKT---EPPVVTGEIDVRLALEVRM--VDAPNGGGFLEIETA----SKTFILRSGDTDVLNKWRRELYE 983
                 2.9****************999...888889*****99999987..677777777888666....69***************998866 PP

  == domain 2  score: 29.5 bits;  conditional E-value: 5.4e-10
                  EEEEEEEEETSSSSCSEEEEEEEEETTE.EEEESSTTCTTESSEEEEEESTTEEEEEEECTTSSSSTSEEEEEESTSSSTEEEEEEE CS
          PH    2 vkeGwLlkkgsgkkkswkkrwfvLkdse.llyykndksekdkepkgsislsncevvevvatedpkrkfcfelriverngsrtyllqa 87  
                  vk+GwLlkkg++ + ++k r++vL++s  lly++++      ++kg ++ls +++ve     ++ +   fe+ ++     rt++++a
  KOO21906.1  993 VKCGWLLKKGETSSAGFKPRYCVLFSSYrLLYFDSE---ACTKRKGAVDLSVAQSVESI---TTAKGPGFEISTP----GRTWVFAA 1069
                  699********9999**********8889*******...*****************965...6666667777555....47777776 PP

  == domain 3  score: 21.5 bits;  conditional E-value: 1.7e-07
                  EEEEE..EEEETSSSSCSEEEEEEEEE.TTEEEEESSTTCTTESSEEEEEESTTEEEEEEECTT.SSSSTSEEEEEESTSSSTEEEEEEESSHHHHH CS
          PH    2 vkeGw..LlkkgsgkkkswkkrwfvLk.dsellyykndksekdkepkgsislsncevvevvate.dpkrkfcfelriverngsrtyllqasseeerk 94  
                   keGw  L+  ++g  + w  +wf L+  +el ++ +  +++++++  s++l+ +e ve+  ++ +   +fc+ l ++    ++t+ ++  +  +++
  KOO21906.1 1111 LKEGWadLKDESGGGEGAWVGHWFALNsAGELRIFPDA-ESTQEQMVLSVDLKLIERVER--SKgMDYYDFCIDLCFS----DKTIKMRPIDRGDMQ 1200
                  69***988866666666**********55559999999.99*****************99..555**********999....79************* PP

                  HHHHHHHH CS
          PH   95 eWikaiqs 102 
                  +W+  +q 
  KOO21906.1 1201 AWLGVLQT 1208
                  **988875 PP

  == domain 4  score: 41.5 bits;  conditional E-value: 1e-13
                  EEEEEEEEETSSSSC..SEEEEEEEEETTE............EEEESST.TCTTESSEEEEEESTTEEEEEEECTTSSSSTSEEEEEESTSSSTEEE CS
          PH    2 vkeGwLlkkgsgkkk..swkkrwfvLkdse............llyyknd.ksekdkepkgsislsncevvevvatedpkrkfcfelriverngsrty 83  
                   ++Gw+ k++++ k+   wkkr+fvL +++            l+y+k++ +    +e  g i+l ++e v      ++ ++  + l++     sr++
  KOO21906.1 1226 LHQGWIEKRSERGKGsdAWKKRYFVLCTKQekegdelaihhlLYYFKSEeSAGDVSEANGCIDLGEVEEV------KKCENRLIDLVTE----SRVW 1312
                  589**99999998889***********8889**********99999999999999***************......6778888888888....7*** PP

                  EEEESSHHHHHHHHHHHHHH CS
          PH   84 llqasseeerkeWikaiqsa 103 
                   l+a+s+++ + W+++iqs+
  KOO21906.1 1313 QLRAESNSDQEIWVRQIQSN 1332
                  ******************97 PP

  == domain 5  score: 1.7 bits;  conditional E-value: 0.24
                  TEEEEEEESSHHHHHHHHHHHHHH CS
          PH   80 srtyllqasseeerkeWikaiqsa 103 
                  +++++l+a+++  +++Wik +++a
  KOO21906.1 1431 DHRWTLAADDDNLLQKWIKLLENA 1454
                  5799***************99887 PP

  == domain 6  score: 60.6 bits;  conditional E-value: 1.1e-19
                  EEEEEEEEETSSSSCSEEEEEEEEETTE.EEEESSTTCTTESSEEEEEESTTEEEEEEECTTSSSSTSEEEEEESTSSSTEEEEEEESSHHHHHHHH CS
          PH    2 vkeGwLlkkgsgkkkswkkrwfvLkdse.llyykndksekdkepkgsislsncevvevvatedpkrkfcfelriverngsrtyllqasseeerkeWi 97  
                  ++ Gw+ kkg   + +wk r+fvL ++  lly+++d   ++ + kg+i+l++++   +   ++p+ ++ f++ +   +++rt++l+ ++e ++keW+
  KOO21906.1 1463 IRNGWMEKKGAMGG-GWKVRFFVLLSTHeLLYFESD---RSPKCKGVIDLKEATQCTR--VASPDYNYEFAFEVG--SPKRTWILCPDDEHSMKEWM 1551
                  589*********99.**********7667*******...****************999..566666666666666..668***************** PP

                  HHHHHH CS
          PH   98 kaiqsa 103 
                  ++i+++
  KOO21906.1 1552 ADIKQL 1557
                  ***987 PP

  == domain 7  score: 47.6 bits;  conditional E-value: 1.2e-15
                  EEEEEEEETSSSSCSEEEEEEEEETTE........EEEESSTTCTTESSEEEEEESTTEEEEEEECTTSSSSTSEEEEEESTSSSTEEEEEEESSHH CS
          PH    3 keGwLlkkgsgkkkswkkrwfvLkdse........llyykndksekdkepkgsislsncevvevvatedpkrkfcfelriverngsrtyllqassee 91  
                  k GwL+kkg+ +   wk r+fvLk ++        l yyk++++ +  +    i+++   + + +  e++++ f f+++++    +r+y l+a s+ 
  KOO21906.1 1604 KAGWLMKKGEVNT-AWKNRYFVLKPENkfrdqpktLWYYKDQDTARMGKNGSMIEVEASASIQKESVEEAGKSFAFAIVTP----TRKYCLCAVSAA 1695
                  78***********.**********7778**************44444444445555544444444388**********999....79********** PP

                  HHHHHHHHHHH CS
          PH   92 erkeWikaiqs 102 
                  e +eWi+ +q+
  KOO21906.1 1696 EQQEWITMLQK 1706
                  *********97 PP

  == domain 8  score: 37.9 bits;  conditional E-value: 1.4e-12
                  EEEEEEEEETSSSSCSEEEEEEEEETTE.EEEESSTTCTTESSEEEEEESTTEEEEEEECTTSSSSTSEEEEEESTSSSTEEEEEEESSHHHHHHHH CS
          PH    2 vkeGwLlkkgsgkkkswkkrwfvLkdse.llyykndksekdkepkgsislsncevvevvatedpkrkfcfelriverngsrtyllqasseeerkeWi 97  
                  v++GwL kkg+g  ++ +kr+fvL d++ l y+  + s+++ ++kg i + ++++ e+  ++  +++f+f+++ +    sr ++l   s  +++eW 
  KOO21906.1 1730 VHSGWLRKKGQGLFGTMHKRYFVLYDNKeLHYFTGE-SMENIQRKGRIKVADISCLERL-KPGNTKDFTFCIKEP----SRDWILDPLSGASLEEWT 1820
                  699**********************8888*******.*******************997.779999******666....79***************9 PP

                  HHHH CS
          PH   98 kaiq 101 
                  + ++
  KOO21906.1 1821 SKLK 1824
                  9997 PP

>> PH_8  Pleckstrin homology domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.5   0.0   2.2e-05     0.033       1      85 [.     996    1088 ..     996    1091 .. 0.76
   2 !   21.9   0.1   1.1e-07   0.00016       2      86 ..    1230    1330 ..    1229    1332 .. 0.64
   3 ?    1.3   0.3      0.29   4.4e+02      68      88 ..    1434    1454 ..    1422    1455 .. 0.88
   4 !   16.7   0.0   4.4e-06    0.0066       3      86 ..    1468    1555 ..    1466    1557 .. 0.75
   5 !   10.8   0.1    0.0003      0.45       1      87 [.    1606    1706 ..    1606    1708 .. 0.65
   6 !   14.1   0.0   2.8e-05     0.042       2      83 ..    1734    1821 ..    1733    1826 .. 0.71

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 2.2e-05
        PH_8    1 gillkkrrkklqgyakRfFvLdlksstlsYyrddnssalrgkiplsla..iisa.neekreiiidsGaevWeLka......snekdfqeWveal 85  
                  g+llkk      g++ R+ vL ++s  l Y+ ++  ++ +g++ ls+a  + s+  ++   + i + ++ W   a      s +++ ++W+++l
  KOO21906.1  996 GWLLKKGETSSAGFKPRYCVL-FSSYRLLYFDSEACTKRKGAVDLSVAqsVESItTAKGPGFEISTPGRTWVFAAcesdakSTASETTAWMDTL 1088
                  89*******************.**********99999999999888775355552456678999999999998772211111234556666666 PP

  == domain 2  score: 21.9 bits;  conditional E-value: 1.1e-07
        PH_8    2 illkk..rrkklqgyakRfFvLdlksst.........lsYyrddnss...alrgkiplsla.iisane.ekreiiidsGaevWeLkasnekdfqeWv 82  
                  ++ k+  r k    ++kR+FvL  k+ +         l Yy ++++s   +   +  ++l  + ++++ e+r i + +  +vW+L+a++++d + Wv
  KOO21906.1 1230 WIEKRseRGKGSDAWKKRYFVLCTKQEKegdelaihhLLYYFKSEESagdVSEANGCIDLGeVEEVKKcENRLIDLVTESRVWQLRAESNSDQEIWV 1326
                  55555224466677********665432222333333555555544437545566677776344444337899999********************* PP

        PH_8   83 eale 86  
                  + ++
  KOO21906.1 1327 RQIQ 1330
                  9876 PP

  == domain 3  score: 1.3 bits;  conditional E-value: 0.29
        PH_8   68 WeLkasnekdfqeWvealeka 88  
                  W+L a++++  q+W++ le+a
  KOO21906.1 1434 WTLAADDDNLLQKWIKLLENA 1454
                  ****************99976 PP

  == domain 4  score: 16.7 bits;  conditional E-value: 4.4e-06
        PH_8    3 llkkrrkklqgyakRfFvLdlksstlsYyrddnssalrgkiplsla....iisaneekre..iiidsGaevWeLkasnekdfqeWveale 86  
                  + kk    + g++ RfFvL l++ +l Y+++d s + +g i l++a     ++  + + e  + + s  + W L  ++e+ ++eW+  ++
  KOO21906.1 1468 MEKKG-AMGGGWKVRFFVL-LSTHELLYFESDRSPKCKGVIDLKEAtqctRVASPDYNYEfaFEVGSPKRTWILCPDDEHSMKEWMADIK 1555
                  55444.45679********.9**********************987432223444445551145667789***************98765 PP

  == domain 5  score: 10.8 bits;  conditional E-value: 0.0003
        PH_8    1 gillkkrrkklqgyakRfFvLdlks......stlsYyrddnssalrgki.........plslaiisaneekreiiidsGaevWeLkasnekdfqeWv 82  
                  g+l+kk    +  ++ R+FvL+ ++       tl Yy+d++ + +  +          +++++ ++   ++  + i + ++ + L a ++++ qeW+
  KOO21906.1 1606 GWLMKKGE-VNTAWKNRYFVLKPENkfrdqpKTLWYYKDQDTARMGKNGsmieveasaSIQKESVEEAGKSFAFAIVTPTRKYCLCAVSAAEQQEWI 1701
                  67887765.56789*******754322223369******99998844331011111002333334444455568999*******************9 PP

        PH_8   83 ealek 87  
                    l+k
  KOO21906.1 1702 TMLQK 1706
                  99876 PP

  == domain 6  score: 14.1 bits;  conditional E-value: 2.8e-05
        PH_8    2 illkkrrkklqgyakRfFvLdlksstlsYyrddnssalrgkiplslaiisa.......neekreiiidsGaevWeLkasnekdfqeWve 83  
                  +l kk +       kR+FvL + + +l+Y++ +  ++++ k  +++a is+       n+++  + i+   + W L   + +  +eW+ 
  KOO21906.1 1734 WLRKKGQGLFGTMHKRYFVL-YDNKELHYFTGESMENIQRKGRIKVADISClerlkpgNTKDFTFCIKEPSRDWILDPLSGASLEEWTS 1821
                  56666666666679******.**********9999999999999999888733333334445556666666777776666666666665 PP

>> PH_3  PH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.0       1.6   2.4e+03      49      97 ..     930     983 ..     916     990 .. 0.70
   2 !   16.5   0.0   4.6e-06    0.0069      14      89 ..     993    1075 ..     985    1092 .. 0.73
   3 ?    1.7   0.0      0.19   2.8e+02      14      97 ..    1226    1331 ..    1217    1336 .. 0.70
   4 !   15.2   0.0   1.2e-05     0.018      14      99 ..    1463    1558 ..    1427    1562 .. 0.79
   5 !    9.7   0.0   0.00058      0.87      14      97 ..    1603    1706 ..    1597    1712 .. 0.56
   6 !   17.5   0.0   2.2e-06    0.0033      14      98 ..    1730    1826 ..    1717    1832 .. 0.82

  Alignments for each domain:
  == domain 1  score: -1.3 bits;  conditional E-value: 1.6
        PH_3  49 ekkGeIplskelkvevknskk...F.lihtpkrtyyledpegn.aakWvkaiee 97 
                 ++ GeI +   l+v++++  +   F +i t ++t++l + + + ++kW + + e
  KOO21906.1 930 VVTGEIDVRLALEVRMVDAPNgggFlEIETASKTFILRSGDTDvLNKWRRELYE 983
                 567999999999988886543233536999999999999555416889887766 PP

  == domain 2  score: 16.5 bits;  conditional E-value: 4.6e-06
        PH_3   14 lkqgivkKrkglf...arkRqllltdgPrLiyvDpekmekk.GeIplskelkvevknsk...kFlihtpkrtyyledpegnaa 89  
                  +k+g + K+ + +   ++ R  +l ++ rL+y+D e+ +k+ G + ls   +ve  +     +F+i tp+rt  +   e++a+
  KOO21906.1  993 VKCGWLLKKGETSsagFKPRYCVLFSSYRLLYFDSEACTKRkGAVDLSVAQSVESITTAkgpGFEISTPGRTWVFAACESDAK 1075
                  5777777774444356999****************9976644*****9666666544331227************99666554 PP

  == domain 3  score: 1.7 bits;  conditional E-value: 0.19
        PH_3   14 lkqgivkKr....kglf.arkRqllltdg...........PrLiyvDpek.....mekkGeIplskelkvevknskkFlihtpkrtyyled.pegna 88  
                  l qg ++Kr    kg    +kR ++l ++             L+y+  e+      e  G I l +  +v+  +++   + t++r+ +l   ++++ 
  KOO21906.1 1226 LHQGWIEKRsergKGSDaWKKRYFVLCTKqekegdelaihHLLYYFKSEEsagdvSEANGCIDLGEVEEVKKCENRLIDLVTESRVWQLRAeSNSDQ 1322
                  6777777776544444456888888877778888888884445566555422222356688888877777777788888999999999998577888 PP

        PH_3   89 akWvkaiee 97  
                  + Wv++i++
  KOO21906.1 1323 EIWVRQIQS 1331
                  899999985 PP

  == domain 4  score: 15.2 bits;  conditional E-value: 1.2e-05
        PH_3   14 lkqgivkKrkglf..arkRqllltdgPrLiyvDpe.kmekkGeIplskelkve......vknskkFlihtpkrtyyle.dpegnaakWvkaieevk 99  
                  +  g ++K+  +    + R ++l ++  L+y++ + + ++kG I l++  +        +  +  F++ +pkrt +l  d e+ +++W+  i+++ 
  KOO21906.1 1463 IRNGWMEKKGAMGggWKVRFFVLLSTHELLYFESDrSPKCKGVIDLKEATQCTrvaspdYNYEFAFEVGSPKRTWILCpDDEHSMKEWMADIKQLL 1558
                  566778887444444899***************8725699******955544400000034455799**********7469999********9975 PP

  == domain 5  score: 9.7 bits;  conditional E-value: 0.00058
        PH_3   14 lkqgivkKrkglf..arkRqllltdg......Pr.L.iyv..DpekmekkG...eIplskelkvevkn....skkFlihtpkrtyyled.pegnaak 90  
                  lk+g + K+ ++    ++R ++l  +      P+ L +y   D   m k G   e++ s +++ e ++    s  F i tp+r+y l   + ++ ++
  KOO21906.1 1603 LKAGWLMKKGEVNtaWKNRYFVLKPEnkfrdqPKtLwYYKdqDTARMGKNGsmiEVEASASIQKESVEeagkSFAFAIVTPTRKYCLCAvSAAEQQE 1699
                  5666666663333236666666655544444444231233112333444443223455566665555411113579***********9846678889 PP

        PH_3   91 Wvkaiee 97  
                  W+ ++++
  KOO21906.1 1700 WITMLQK 1706
                  **99997 PP

  == domain 6  score: 17.5 bits;  conditional E-value: 2.2e-06
        PH_3   14 lkqgivkKr.kglf..arkRqllltdgPrLiyvDpekme...kkGeIpls.....kelkvevknskkFlihtpkrtyyled.pegnaakWvkaieev 98  
                  + +g ++K+ +glf    kR ++l d+  L y+  e+me    kG I++      + lk    ++ +F+i+ p+r  +l   + + +++W+ +++ +
  KOO21906.1 1730 VHSGWLRKKgQGLFgtMHKRYFVLYDNKELHYFTGESMEniqRKGRIKVAdisclERLKPGNTKDFTFCIKEPSRDWILDPlSGASLEEWTSKLKPM 1826
                  56788888879999999****************9888863326999999877666788988888899************9945567899*9999866 PP

>> PH_11  Pleckstrin homology domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.3   0.0      0.95   1.4e+03      75     102 ..     954     981 ..     950     984 .. 0.88
   2 ?    4.7   0.0     0.026        39       1      34 [.     994    1030 ..     994    1097 .. 0.84
   3 ?   -1.1   0.0       1.7   2.6e+03      12     103 ..    1128    1207 ..    1112    1209 .. 0.50
   4 !    9.1   4.3    0.0011       1.7       2     104 ..    1228    1331 ..    1227    1332 .. 0.64
   5 !   12.8   0.0   7.8e-05      0.12       2      85 ..    1465    1557 ..    1464    1570 .. 0.73
   6 !   19.0   0.7   9.3e-07    0.0014       2     104 ..    1605    1706 ..    1604    1707 .. 0.71
   7 !    6.6   0.1     0.007        10       2      37 ..    1732    1770 ..    1731    1791 .. 0.80

  Alignments for each domain:
  == domain 1  score: -0.3 bits;  conditional E-value: 0.95
       PH_11  75 lleistetkifflkgdsneeteeWveal 102
                 +lei t  k+f+l+  + +  ++W + l
  KOO21906.1 954 FLEIETASKTFILRSGDTDVLNKWRREL 981
                 689999******************8877 PP

  == domain 2  score: 4.7 bits;  conditional E-value: 0.026
       PH_11    1 vkGylkkkgsk...aWkrrwfavlkdgvLeyYksekk 34  
                  ++G+l kkg+    + k r+++++   +L y++se  
  KOO21906.1  994 KCGWLLKKGETssaGFKPRYCVLFSSYRLLYFDSEAC 1030
                  589999999989999******999999******9864 PP

  == domain 3  score: -1.1 bits;  conditional E-value: 1.7
       PH_11   12 aWkrrwfavlkdgvLeyYksekkkvvkhviklSngseaklkadlisaalfkidsirssksddllleistetkifflkgdsneeteeWvealk 103 
                  aW   wfa+   g L+ + + +             ++ +l +dl  +++  ++++++    d  + +  + k++ ++  ++ ++++W+  l+
  KOO21906.1 1128 AWVGHWFALNSAGELRIFPDAESTQ----------EQMVLSVDLKLIER--VERSKGMDYYDFCIDLCFSDKTIKMRPIDRGDMQAWLGVLQ 1207
                  5666666555555665555444333..........33333333333332..33334444444444444455666677777777777776666 PP

  == domain 4  score: 9.1 bits;  conditional E-value: 0.0011
       PH_11    2 kGylkkkgsk.....aWkrrwfavlkdgvLeyYksekkkvvkhviklSngseaklkadlisaalfkidsirs...sksddllleistetkifflkgd 90  
                  +G+++k++++     aWk+r+f vl   +    ++e++     + +l  + +    a  +s a+  id  +    +k ++ l+ + te ++ +l+++
  KOO21906.1 1228 QGWIEKRSERgkgsdAWKKRYF-VLCTKQ----EKEGDEL--AIHHLLYYFKSEESAGDVSEANGCIDLGEVeevKKCENRLIDLVTESRVWQLRAE 1317
                  699999999999**********.444443....3444444..233333333333333333333332222222113666677888999********** PP

       PH_11   91 sneeteeWvealke 104 
                  sn ++e Wv+++++
  KOO21906.1 1318 SNSDQEIWVRQIQS 1331
                  **********9996 PP

  == domain 5  score: 12.8 bits;  conditional E-value: 7.8e-05
       PH_11    2 kGylkkkgsk..aWkrrwfavlkdgvLeyYksekkkvvkhviklSngseaklkadlisaalf.......kidsirssksddllleistetkif 85  
                  +G+++kkg+   +Wk r+f++l    L y++s+     k vi l    ++   a+   +  f       k  +i  +  ++ ++e+  + k +
  KOO21906.1 1465 NGWMEKKGAMggGWKVRFFVLLSTHELLYFESDRSPKCKGVIDLKEATQCTRVASPDYNYEFafevgspKRTWILCPDDEHSMKEWMADIKQL 1557
                  699999999999*******99**********98887778899998888886554433333335666666666666677777777776666664 PP

  == domain 6  score: 19.0 bits;  conditional E-value: 9.3e-07
       PH_11    2 kGylkkkgsk..aWkrrwf.....avlkdg..vLeyYksekkkvvkhviklSngseaklkadlisaalfkidsirssksddllleistetkifflkg 89  
                  +G+l+kkg+   aWk+r+f      +++d+   L yYk++             g+++ +  +  sa+ +k + ++    ++  ++i t t+ + l +
  KOO21906.1 1605 AGWLMKKGEVntAWKNRYFvlkpeNKFRDQpkTLWYYKDQDTAR--------MGKNGSMIEVEASASIQKES-VEE-AGKSFAFAIVTPTRKYCLCA 1691
                  79*****99999*******6666644444466899999887766........45555554444444444443.333.33456677888888889*** PP

       PH_11   90 dsneeteeWvealke 104 
                  +s  e++eW+  l++
  KOO21906.1 1692 VSAAEQQEWITMLQK 1706
                  ***********9985 PP

  == domain 7  score: 6.6 bits;  conditional E-value: 0.007
       PH_11    2 kGylkkkgsk...aWkrrwfavlkdgvLeyYksekkkvv 37  
                   G+l+kkg+    +  +r+f++  +  L+y+  e + ++
  KOO21906.1 1732 SGWLRKKGQGlfgTMHKRYFVLYDNKELHYFTGESMENI 1770
                  58999999889998999***899999******9999983 PP

>> PDZ_6  PDZ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.0   0.1   4.8e-10   7.1e-07       5      56 .]     836     885 ..     832     885 .. 0.92

  Alignments for each domain:
  == domain 1  score: 29.0 bits;  conditional E-value: 4.8e-10
       PDZ_6   5 VdpgsPAdrAG.lrvGDiilsvNGqpveglsladvaallrgsagesvvlvvrr 56 
                 + p+++A+r   lrvGD+i  vNG+++  +++++v++ +r + g  v l++ r
  KOO21906.1 836 IAPDGVAARDSrLRVGDMIRGVNGVTC--GTYDEVINVIR-ASGATVKLTISR 885
                 789******999***************..***********.999999999865 PP

>> PDZ  PDZ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.6   0.0   1.8e-09   2.7e-06       8      81 ..     811     883 ..     805     884 .. 0.90

  Alignments for each domain:
  == domain 1  score: 27.6 bits;  conditional E-value: 1.8e-09
                 TTSESSEEEEEETTSSSSSSEEEEEECTTSHHHHHT.SSTTEEEEEETTEETTTSHHHHHHHHHHTTTSEEEEEE CS
         PDZ   8 grgglGfslkggsdqrgdkgifvsevlpggaaeadg.lkvGDkIlsvNgvdvenvsheeavqaikgskgkvtLti 81 
                 ++   G +++ +  +r+  g+ +  + p+g a++d  l+vGD+I +vNgv+  +   +e++++i+ s+ +v+Lti
  KOO21906.1 811 QHRARGRKIRIEYRKRHLAGATIGFIAPDGVAARDSrLRVGDMIRGVNGVTCGTY--DEVINVIRASGATVKLTI 883
                 566678888888899999*******************************999876..9*********99****99 PP

>> PH_2  Plant pleckstrin homology-like region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   0.0       1.1   1.7e+03      33     101 ..     918     985 ..     909     987 .. 0.77
   2 ?   -1.4   0.0         2   3.1e+03      70     101 ..    1055    1092 ..    1036    1095 .. 0.71
   3 ?   -2.3   0.0       3.9   5.8e+03      43      78 ..    1219    1256 ..    1216    1258 .. 0.58
   4 !   10.5   0.1    0.0004       0.6      64      98 ..    1296    1330 ..    1265    1333 .. 0.81
   5 ?    4.1   0.0     0.039        59      66     102 ..    1523    1559 ..    1473    1561 .. 0.76
   6 ?    2.2   0.0      0.15   2.2e+02      57      98 ..    1664    1705 ..    1648    1706 .. 0.74

  Alignments for each domain:
  == domain 1  score: -0.6 bits;  conditional E-value: 1.1
        PH_2  33 khvggafskkkksvVldvskdipawpreeeeseeeryyfglkTaeglvefeckskaekkvWvegiknlL 101
                 ++ + +f+k++  vV++  +   a++ ++ ++ +   +++++Ta ++  ++  +    ++W   + +lL
  KOO21906.1 918 NR-VLTFEKTEPPVVTGEIDVRLALEVRMVDAPNGGGFLEIETASKTFILRSGDTDVLNKWRRELYELL 985
                 55.467888888888887766666664455666666899**********************99988887 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 2
        PH_2   70 yfglkTaeglvefe.ckska.....ekkvWvegiknlL 101 
                   f+++T  ++  f  c+s+a     e   W+++++ +L
  KOO21906.1 1055 GFEISTPGRTWVFAaCESDAkstasETTAWMDTLRTML 1092
                  57888888888888787765111125678999999999 PP

  == domain 3  score: -2.3 bits;  conditional E-value: 3.9
        PH_2   43 kksvVldvskdipawpreeeese.....eeryyfglkTaeg 78  
                  k sv++ +++   + + +e   +      +++yf+l T+++
  KOO21906.1 1219 KGSVITMLHQGWIEKR-SE--RGkgsdaWKKRYFVLCTKQE 1256
                  6667777775444433.22..22234545569****99986 PP

  == domain 4  score: 10.5 bits;  conditional E-value: 0.0004
        PH_2   64 seeeryyfglkTaeglvefeckskaekkvWvegik 98  
                  ++ e++++ l T+ ++ +++++s+ ++++Wv  i+
  KOO21906.1 1296 KKCENRLIDLVTESRVWQLRAESNSDQEIWVRQIQ 1330
                  335669**************************998 PP

  == domain 5  score: 4.1 bits;  conditional E-value: 0.039
        PH_2   66 eeryyfglkTaeglvefeckskaekkvWvegiknlLs 102 
                  + ++ f++   +++  +  +++++ k W++ ik+lL 
  KOO21906.1 1523 NYEFAFEVGSPKRTWILCPDDEHSMKEWMADIKQLLG 1559
                  3448888888899999999****************96 PP

  == domain 6  score: 2.2 bits;  conditional E-value: 0.15
        PH_2   57 wpreeeeseeeryyfglkTaeglvefeckskaekkvWvegik 98  
                  +++e  e+  + + f++ T +++  + + s ae++ W++ ++
  KOO21906.1 1664 IQKESVEEAGKSFAFAIVTPTRKYCLCAVSAAEQQEWITMLQ 1705
                  223444444666*************************98765 PP

>> PH_6  Pleckstrin homology domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.0       1.5   2.2e+03      51      99 ..    1022    1072 ..    1021    1090 .. 0.65
   2 !   11.8   0.0   0.00015      0.22      51     111 ..    1267    1331 ..    1264    1332 .. 0.85
   3 ?    2.4   0.0      0.12   1.9e+02      51      93 ..    1491    1536 ..    1486    1556 .. 0.67
   4 ?    3.2   0.0      0.07     1e+02      81     110 ..    1676    1705 ..    1636    1707 .. 0.73

  Alignments for each domain:
  == domain 1  score: -1.1 bits;  conditional E-value: 1.5
        PH_6   51 LLffskkedkaspsgvinLadasevaadgeqk...FhltakGkkhtFkasst 99  
                  LL+f  +e  +  +g+++L+ a  v+   + k   F + + G+   F a ++
  KOO21906.1 1022 LLYFD-SEACTKRKGAVDLSVAQSVESITTAKgpgFEISTPGRTWVFAACES 1072
                  45555.6666778888888877766655544444499999999999988543 PP

  == domain 2  score: 11.8 bits;  conditional E-value: 0.00015
        PH_6   51 LLffsk....kedkaspsgvinLadasevaadgeqkFhltakGkkhtFkasstaeRdnWvaqlke 111 
                  LL++ k    ++d + ++g i+L ++ ev++  ++   l+++ +  + +a s ++ + Wv+q+++
  KOO21906.1 1267 LLYYFKseesAGDVSEANGCIDLGEVEEVKKCENRLIDLVTESRVWQLRAESNSDQEIWVRQIQS 1331
                  666655212345677899*************9999999*************************87 PP

  == domain 3  score: 2.4 bits;  conditional E-value: 0.12
        PH_6   51 LLffskkedka.spsgvinLadaseva....adgeqkFhltakGkkht 93  
                  LL+f   +d++   +gvi+L +a++ +    +d++ +F + ++  k t
  KOO21906.1 1491 LLYFE--SDRSpKCKGVIDLKEATQCTrvasPDYNYEFAFEVGSPKRT 1536
                  67776..4555499*********9975222257777788777665555 PP

  == domain 4  score: 3.2 bits;  conditional E-value: 0.07
        PH_6   81 qkFhltakGkkhtFkasstaeRdnWvaqlk 110 
                    F +++  +k    a s+ae ++W+++l+
  KOO21906.1 1676 FAFAIVTPTRKYCLCAVSAAEQQEWITMLQ 1705
                  2477788999****************9987 PP

>> PDZ_2  PDZ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.0   0.0   1.8e-06    0.0027      15      80 ..     830     894 ..     814     896 .. 0.82

  Alignments for each domain:
  == domain 1  score: 18.0 bits;  conditional E-value: 1.8e-06
                 -EEEEEE-TTSGGGGT..--TT-EEEEETTB--SSHHHHHHHHHTS-TT-EEEEEEEETTEEEEEEE CS
       PDZ_2  15 gvlvvsVkeggPaakag.lkagDvilkvdgkkvksledlislllkkkpGdtVkltvlRdgkkktvev 80 
                 g+++  + ++g aa+   l+ gD i  v+g++  + +++i+ ++    G tVklt++R+  +k +e 
  KOO21906.1 830 GATIGFIAPDGVAARDSrLRVGDMIRGVNGVTCGTYDEVINVIR--ASGATVKLTISRKPVTKLLET 894
                 556666666666665555*************************7..57**********988887775 PP

>> PH_13  Pleckstrin homology domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.7   0.0      0.27     4e+02      33      56 ..     658     681 ..     652     691 .. 0.81
   2 !    9.3   0.1   0.00064      0.95      95     131 ..    1295    1331 ..    1286    1335 .. 0.86
   3 ?   -1.5   0.0       1.3     2e+03     108     133 ..    1430    1455 ..    1422    1459 .. 0.86
   4 ?    0.2   0.0       0.4     6e+02      96     136 ..    1521    1561 ..    1503    1580 .. 0.73
   5 ?    2.6   0.0     0.073   1.1e+02      90     134 ..    1665    1709 ..    1640    1715 .. 0.84

  Alignments for each domain:
  == domain 1  score: 0.7 bits;  conditional E-value: 0.27
                 TTT--EEEEEEESSEEEEEEEE-- CS
       PH_13  33 aksnKElvgFLfNDFlLltqpvkk 56 
                  k nKEl +F f   l+ltq   +
  KOO21906.1 658 IKPNKELEAFKFTPSLVLTQLRCS 681
                 589****************98654 PP

  == domain 2  score: 9.3 bits;  conditional E-value: 0.00064
                  S-.----EEEEEESSEEEEEEESSHHHHHHHHHHHHH CS
       PH_13   95 ksdssekvlklsdidkvitlkaesanersaWvkkike 131 
                   ++ +++++ l   ++v +l+aes ++++ Wv++i++
  KOO21906.1 1295 VKKCENRLIDLVTESRVWQLRAESNSDQEIWVRQIQS 1331
                  55667888999999*********************86 PP

  == domain 3  score: -1.5 bits;  conditional E-value: 1.3
                  SSEEEEEEESSHHHHHHHHHHHHHHH CS
       PH_13  108 idkvitlkaesanersaWvkkikeAs 133 
                   d+  tl a+  n  ++W+k +++A+
  KOO21906.1 1430 PDHRWTLAADDDNLLQKWIKLLENAA 1455
                  578899****************9997 PP

  == domain 4  score: 0.2 bits;  conditional E-value: 0.4
                  -.----EEEEEESSEEEEEEESSHHHHHHHHHHHHHHHHHH CS
       PH_13   96 sdssekvlklsdidkvitlkaesanersaWvkkikeAseky 136 
                  + + e  +++   +++ +l ++   + ++W+  ik+   k 
  KOO21906.1 1521 DYNYEFAFEVGSPKRTWILCPDDEHSMKEWMADIKQLLGKA 1561
                  4467889999999*******************999865443 PP

  == domain 5  score: 2.6 bits;  conditional E-value: 0.073
                  E--SSS-.----EEEEEESSEEEEEEESSHHHHHHHHHHHHHHHH CS
       PH_13   90 kkpsdksdssekvlklsdidkvitlkaesanersaWvkkikeAse 134 
                  +k s ++  ++  + +    + + l a sa e+++W+  +++ s+
  KOO21906.1 1665 QKESVEEAGKSFAFAIVTPTRKYCLCAVSAAEQQEWITMLQKPSQ 1709
                  44444455789999999********************99988665 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0   0.00034       0.5       4      34 ..     148     178 ..     145     225 .. 0.77

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00034
      AAA_22   4 tagilvvtGesGtGKTtllrrlleqldeeak 34 
                 + + lvv GesG+GKT + + l+  l  ++k
  KOO21906.1 148 RNQALVVSGESGAGKTETNKHLMTFLAWRSK 178
                 57899***************99998854433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1836 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       501  (0.0279436); expected 358.6 (0.02)
Passed bias filter:                      455  (0.0253779); expected 358.6 (0.02)
Passed Vit filter:                        62  (0.00345808); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 1.04u 0.29s 00:00:01.33 Elapsed: 00:00:00.47
# Mc/sec: 11699.08
//
Query:       KOO21907.1  [L=306]
Description: conserved unknown protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (306 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       413  (0.0230353); expected 358.6 (0.02)
Passed bias filter:                      327  (0.0182386); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.46u 0.23s 00:00:00.69 Elapsed: 00:00:00.42
# Mc/sec: 2188.49
//
Query:       KOO21908.1  [L=246]
Description: hypothetical protein Ctob_002662 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.085   12.0   0.0       0.12   11.6   0.0    1.1  1  SopD      Salmonella outer protein D


Domain annotation for each model (and alignments):
>> SopD  Salmonella outer protein D
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   6.4e-06      0.12     129     200 ..     115     185 ..     110     211 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 6.4e-06
                 T--TTS------HHHHHHHHHHHHHHHHHHHHSCCCCCCSCCHHHHHHHC-HHHHHHH.HHHHTTTS-TTS-- CS
        SopD 129 nvsedavikvmeeeeeelflkicikigekisrypelleesisklkdevtedddvkdev.yklmrsaedrdmel 200
                  +s+   + v   ++ el   +c+ +g+ + ++pe+  + + +l+ +v     + d+v    +r ++d +m l
  KOO21908.1 115 KISDAIALSVRAADDVELACSMCKTVGDVLIKHPEVDVKIAVRLRADVYV--AIVDAVmSSYLRHTDDAKMRL 185
                 58999999999**********************************99974..344554146788888888765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (246 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       633  (0.0353059); expected 358.6 (0.02)
Passed bias filter:                      452  (0.0252106); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.26s 00:00:00.68 Elapsed: 00:00:00.40
# Mc/sec: 1859.03
//
Query:       KOO21909.1  [L=429]
Description: camp-regulated d2 protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.7e-67  228.4   0.0    2.5e-67  227.9   0.0    1.2  1  COesterase     Carboxylesterase family
    8.3e-06   25.8   1.4    0.00022   21.2   0.0    3.0  3  Abhydrolase_3  alpha/beta hydrolase fold
  ------ inclusion threshold ------
      0.027   14.0   0.0      0.066   12.7   0.0    1.7  2  Peptidase_S9   Prolyl oligopeptidase family


Domain annotation for each model (and alignments):
>> COesterase  Carboxylesterase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  227.9   0.0   4.2e-71   2.5e-67     129     512 .]       2     419 ..       1     419 [. 0.87

  Alignments for each domain:
  == domain 1  score: 227.9 bits;  conditional E-value: 4.2e-71
                 HHHHHTSEEEEE----HHHHH-B-SS.......TTSBS-HHHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHHSGGGTTSBSEEEEES- CS
  COesterase 129 LaaegnvivVtinYRlGvlGFlstgd.......eeapGNvGllDqvlALrWVkenIasFGGdpervtlfGesAGaasvsllllsplsrglfkraIlqSG 220
                 L+++ +++vV+inYRlG+lG+l tg        +++ GN+GllDq+lA+rWV+ n a FGGdp+r+tlfG+sAGa s+s +l+ p s+glf  aIl+S+
  KOO21909.1   2 LVQSHGIVVVSINYRLGALGWLFTGAppseeptDNLVGNYGLLDQQLAMRWVQANAARFGGDPSRITLFGQSAGAQSISCHLTMPSSKGLFAGAILESA 100
                 77888*******************6555455669999************************************************************** PP

                 -TTSTTTSBSHHHHHHHHHHHHTTS-CSSHHHHHHHHHCS-HHHHHHCCGG.......SSSSSSTTC-SSS-B--SSSSSS-HHHHHHCGC..CSEEEE CS
  COesterase 221 salspwaiqkkarkrakklakkvgckassskelveclrsksaeelldaqek.......aleasssklvsfaPvvdgdflpekPeellkseg..kvplli 310
                      w + +++ k +  +ak  gc  ++  e v clr  ++++ll+aq+           ++ s + +faP+v  ++l+++P++++      +vp+ +
  KOO21909.1 101 PLGLTWRTAEQSPKFTGLVAKLGGCIGTTPGEYVPCLRAMPVDTLLKAQTAagnnipiEAGTTLSLFEPFAPTVATALLTQQPLNAFLAGRvhDVPISL 199
                 *************************999999******************9999999987778889999*******************99669******* PP

                 EEETTTTHHHHCCHSTTTSSSSHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHSTTTSSTCHHHHHHHHHHHHHHHHTHHHHHHHHHHHH......H CS
  COesterase 311 Gvnkdegllflaylldkeksvkkkeeklsesllkdelyleaekkeelseaikeeytdeadrddaeksrkallelltdvlfkapvlrtaklha......s 403
                 G +++egl f++  +++        + ++ + l + +        + + ai++ y   a ++ a   r+ ++ ++td lf++ ++++  ++a      s
  KOO21909.1 200 GSVEQEGLVFVYEAFPTP------VTPVEMDSLLRLVWG------ADAPAIRDAYPVPAAQQAAHDARNVTSLVATDGLFHCAIRAAGLALAdqyakgS 286
                 ************888884......333333333333333......44689999**98888888888888888999*********998877777787999 PP

                 TT-SEEEEEEE--STTSSS...T....TTGSSBTTTTHHHHTTGGGTSGCS.S-HHHHHHHHHHHHHHHHHHHHSSTTS................TTSS CS
  COesterase 404 rgspvYlYsfdyrnssskk...p....kwmgvvhgdeleyvfglpllekee.ftkedeklsrkmmtywtnFaktgnPnk................eeee 478
                 r  p+Y+Y+fd+  s  ++   p     + +v+hg+el++vf+  +   +  ft+e+  ls+ m t w+ Fa tg+                   +   
  KOO21909.1 287 RTHPTYVYNFDHLISFGASfwlPtnpvCVEAVCHGEELPFVFQPDVSIINVsFTSEEVVLSDLMQTHWAAFASTGHAAAsvasvvrklapqavtqAAAL 385
                 9999********9999888889455578899***********98776555559999*******************666666666666666669888899 PP

                 ----B.TTTBEEEEESSSSSEEEESTTHHHHHHH CS
  COesterase 479 kWpkytkeeekylkinlkpkrvkkklkeeevafw 512
                  Wp +++ +e+y  +  + +++  ++ ++++a+w
  KOO21909.1 386 DWPLFEPANESYALFRAPDSHIVPHPFRAKCAVW 419
                 9***********9999998877777777787776 PP

>> Abhydrolase_3  alpha/beta hydrolase fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.8   0.0      0.03   1.8e+02      24      40 ..       2      18 ..       1      19 [. 0.85
   2 !   21.2   0.0   3.6e-08   0.00022      55      88 ..      49      83 ..      42     117 .. 0.76
   3 ?   -1.0   0.1      0.23   1.4e+03      26      50 ..     361     385 ..     337     398 .. 0.61

  Alignments for each domain:
  == domain 1  score: 1.8 bits;  conditional E-value: 0.03
                   HHHHHTSEEEEEE---T CS
  Abhydrolase_3 24 lakelgavvvsvdYrlA 40
                   l++  g+vvvs++Yrl 
     KOO21909.1  2 LVQSHGIVVVSINYRLG 18
                   5677899********95 PP

  == domain 2  score: 21.2 bits;  conditional E-value: 3.6e-08
                   HHHHHHHTHHHHTETTCEEEEEEETHHHH.HHHHH CS
  Abhydrolase_3 55 alrwlaeqawelgadpsrivlaGdSaGGn.laaav 88
                   a+rw++++a+++g dpsri+l+G+SaG++ ++ ++
     KOO21909.1 49 AMRWVQANAARFGGDPSRITLFGQSAGAQsISCHL 83
                   89*************************97244444 PP

  == domain 3  score: -1.0 bits;  conditional E-value: 0.23
                    HHHTSEEEEEE---TTTS-TTHHHH CS
  Abhydrolase_3  26 kelgavvvsvdYrlAPehpfPaave 50 
                     ++ a v sv  +lAP++   aa  
     KOO21909.1 361 GHAAASVASVVRKLAPQAVTQAAAL 385
                    3344555566666666665555544 PP

>> Peptidase_S9  Prolyl oligopeptidase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   1.1e-05     0.066      11      96 ..       4      99 ..       1     120 [. 0.71
   2 ?   -3.6   0.0       1.1   6.3e+03      86     102 ..     264     280 ..     258     289 .. 0.73

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 1.1e-05
                  HCCT-EEEEE--TTSSTTHCHHHHT......TSGGGGHHHHHHHHHHHHHH...HHTTS--GGGEEEEEETHHHHHHHHHHH..H-GGG-SEEEEES CS
  Peptidase_S9 11 adrGyvvvvanirGsggyGeafhda......gkrklgqnefdDfiaaaeal...akegyvdserlaitGgSyGGyltgaaln..qrpdlFkaavaev 96
                   + G+vvv +n+r ++  G+ f+ a       ++  g++ + D+  a++++   a+++  d++r+ ++G S+G + + + l+  + + lF++a+ e 
    KOO21909.1  4 QSHGIVVVSINYRLGA-LGWLFTGAppseepTDNLVGNYGLLDQQLAMRWVqanAARFGGDPSRITLFGQSAGAQSISCHLTmpSSKGLFAGAILES 99
                  5677777777777666.6666654422222245555666677776666666332666789******************9999555677899988765 PP

  == domain 2  score: -3.6 bits;  conditional E-value: 1.1
                   GGG-SEEEEESE---CC CS
  Peptidase_S9  86 pdlFkaavaevpvvdvl 102
                   + lF++a+ +++ +   
    KOO21909.1 264 DGLFHCAIRAAGLALAD 280
                   67999999999987555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (429 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       257  (0.0143343); expected 358.6 (0.02)
Passed bias filter:                      218  (0.0121591); expected 358.6 (0.02)
Passed Vit filter:                        11  (0.000613531); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.46u 0.25s 00:00:00.71 Elapsed: 00:00:00.39
# Mc/sec: 3319.37
//
Query:       KOO21910.1  [L=937]
Description: trafficking protein particle complex 8 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
  ------ inclusion threshold ------
      0.011   15.8  15.8      0.011   15.8  15.8    2.7  2  HC2              Histone H1-like nucleoprotein HC2
      0.042   13.6   0.1      0.086   12.6   0.1    1.4  1  Glyco_transf_34  galactosyl transferase GMA12/MNN10 family
       0.07   13.8   0.3       0.23   12.1   0.3    1.9  1  DUF3139          Protein of unknown function (DUF3139)
       0.14   12.1   0.1       0.47   10.5   0.1    1.8  1  DUF2196          Uncharacterized conserved protein (DUF2196)


Domain annotation for each model (and alignments):
>> HC2  Histone H1-like nucleoprotein HC2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.8   2.2       0.1   4.5e+02      20     119 ..      25      92 ..      13     122 .. 0.37
   2 ?   15.8  15.8   2.6e-06     0.011      18      79 ..     615     680 ..     605     697 .. 0.58

  Alignments for each domain:
  == domain 1  score: 0.8 bits;  conditional E-value: 0.1
         HC2  20 vrKpaAkKaaakktvvrKvaaKKtaarKtvakktvakkkvaakkaaakkaavkkavakkvva.kkkvakKa.vAKKaaakKvvak..kvvakKtvakka 114
                  rKp                                    a+k a   ++ vk++   k     k+   K+ v K   a  +  k  +++  K++a++ 
  KOO21910.1  25 DRKP------------------------------------AQKFAIGSRVCVKRSNGDKSFGyVKEYNEKTrVYKLELATGTLEKfdEAAIEKKPAQRF 87 
                 2333....................................33333333333333333222210111111110111122222222211111122222222 PP

         HC2 115 aaakK 119
                 a a+K
  KOO21910.1  88 ANAQK 92 
                 22222 PP

  == domain 2  score: 15.8 bits;  conditional E-value: 2.6e-06
         HC2  18 aavrKpaAkKaaakktvvrKvaaKKtaarKtvak....ktvakkkvaakkaaakkaavkkavakkv 79 
                 +a  K aA Kaaa+k+++ Kvaa K+a+ K+v+     k + + + +  k aa ka+   avakk 
  KOO21910.1 615 MAKEKVAAEKAAAEKVAAEKVAAEKVAVEKAVKGidigKGIDESTQSDEKEAAEKAPAEVAVAKKE 680
                 244555566666666666666666666666655411114555556666666666666666666664 PP

>> Glyco_transf_34  galactosyl transferase GMA12/MNN10 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.1   1.9e-05     0.086      62      82 ..     718     738 ..     691     742 .. 0.87

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 1.9e-05
  Glyco_transf_34  62 aklpairaamkkyPeaewiWw 82 
                      a+l ai++ +k++Pe++w+W+
       KOO21910.1 718 AQLQAIKEYLKEHPEIKWVWF 738
                      6899****************8 PP

>> DUF3139  Protein of unknown function (DUF3139)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.3   5.2e-05      0.23       6      69 ..     506     569 ..     504     579 .. 0.75

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 5.2e-05
     DUF3139   6 iililliillvivkvfl.glvgskpikkylankkldkylqekgykeddIksikpkydskkgsyya 69 
                 ii+ +li++ ++   fl ++  +       a kkl++ + ++++ +++I++ + k++   +++y+
  KOO21910.1 506 IIVHVLIVVAFN-FDFLkKYASAIGAGDQAAIKKLKEKMRKEKIWNEEIQKYECKWSDEAPYFYF 569
                 788888888888.3344455555555555566**************************9997775 PP

>> DUF2196  Uncharacterized conserved protein (DUF2196)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.1    0.0001      0.47       6      46 ..     822     862 ..     819     864 .. 0.96

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.0001
     DUF2196   6 kdikpGleVeivlkkdqrtGklteGiVkdilTnssthphGI 46 
                 +d+++G +  i   +++ +G++ +G+V+ + T+ ++  hGI
  KOO21910.1 822 SDVQVGSRCTIKCIHNAAKGTTSKGLVDLVATQTPKAMHGI 862
                 7899************************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (937 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1156  (0.0644765); expected 358.6 (0.02)
Passed bias filter:                      562  (0.0313459); expected 358.6 (0.02)
Passed Vit filter:                        48  (0.00267723); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.73u 0.24s 00:00:00.97 Elapsed: 00:00:00.42
# Mc/sec: 6766.42
//
Query:       KOO21911.1  [L=395]
Description: hypothetical protein Ctob_002665 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
     0.0029   17.7  14.3     0.0029   17.7  14.3    5.7  4  TPR_MLP1_2  TPR/MLP1/MLP2-like protein
  ------ inclusion threshold ------
       0.35   11.2   4.4       0.21   11.9   1.0    2.5  2  Ycf54       Protein of unknown function (DUF2488)
       0.51    9.9   6.0        0.1   12.1   1.5    2.1  2  DUF775      Protein of unknown function (DUF775)
        1.6    9.2   7.6         17    5.9   0.3    4.6  5  FlaC_arch   Flagella accessory protein C (FlaC)
        2.1    7.8  54.0         12    5.4   0.7    4.3  2  Filament    Intermediate filament protein


Domain annotation for each model (and alignments):
>> TPR_MLP1_2  TPR/MLP1/MLP2-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -7.0  15.9         5   1.8e+04      46     112 ..       9      74 ..       1      81 [. 0.64
   2 ?    0.1  14.9      0.22   7.9e+02      12     118 ..      48     149 ..      44     152 .. 0.81
   3 ?   -1.3  11.5      0.59   2.1e+03      23     118 ..     160     260 ..     149     264 .. 0.44
   4 !   17.7  14.3   8.1e-07    0.0029       4     113 ..     266     379 ..     263     382 .. 0.75

  Alignments for each domain:
  == domain 1  score: -7.0 bits;  conditional E-value: 5
  TPR_MLP1_2  46 erelvkhaedvkelqalreelnelkaeiaelkaeaesakaeleeseesweeqkeelekelselekri 112
                 e+ l+++ ++++e+ + re+++ ++ +++ l++++ s  ++++++e+  +e++  l+ +l+  ++r 
  KOO21911.1   9 EKVLLEQQAELTEVLKERERHA-AERQRQVLEEARASRAEAVAKAEARAAEERAGLRLQLDAERRRA 74 
                 4455566666666666666554.55566777777777778888888888888888777777666655 PP

  == domain 2  score: 0.1 bits;  conditional E-value: 0.22
  TPR_MLP1_2  12 slkeekeeaeaklqklqedlekqaeiakeaqqkYerelvkhaedvkelqalreelnelkaeiaelkaeaesakaeleeseesweeqkeelekelselek 110
                 ++ + +++a+++ + l+ +l +++++a+ a +       +  ++ + +++ ++ l e++ ++++l+ +++s++ ele+ +  ++e++ ++e+  +++e+
  KOO21911.1  48 AVAKAEARAAEERAGLRLQLDAERRRAASAID-----QALTTAQREWMSERNALLLEYERKVSTLEVSLKSTTDELERLRRDLSERQIAYERARADVER 141
                 56666777777777777777777777777777.....45555666677788888899****************************************** PP

  TPR_MLP1_2 111 riedlneq 118
                 r ++  +q
  KOO21911.1 142 RADEKVAQ 149
                 **997666 PP

  == domain 3  score: -1.3 bits;  conditional E-value: 0.59
  TPR_MLP1_2  23 klqklqedlekqaeiakeaqqkYerelvkhaedvkelqalreel..nelkaeiaelkaeaesakaeleesees...weeqkeelekelselekriedln 116
                 k+++++e ++++++ a++  +     l++ +++++ l +   +   ++l+++ a +ka+ ++a+ e+ + +++      +  +l  e++ +e+r+  l+
  KOO21911.1 160 KVNAARELITSMERAAARTTREHTAALTQAKDASDVLIREQGQRfrKSLEEQSAAFKADMDKATVEIVRLRNEghtARAEAAALGVEIERAEARLSALQ 258
                 333344444444444444444444444443333333333333324455555555555555555554433333300033333445555555555555555 PP

  TPR_MLP1_2 117 eq 118
                 eq
  KOO21911.1 259 EQ 260
                 55 PP

  == domain 4  score: 17.7 bits;  conditional E-value: 8.1e-07
  TPR_MLP1_2   4 ksleeeikslkeekeeaeaklqklqedlekqaeiakeaqqkYerelvkhaedvkelqalreelnelkaeiaelkaeaesak....aeleeseesweeqk 98 
                 ++l+e+++++ +e ++ e +lq  qe+l+ q+e+++++  +Ye+  +kh  +v e++ lr+el+ ++     + +++ +++    ++  ++ ++ + + 
  KOO21911.1 266 TRLTETATRAATELARVEIQLQLNQEQLQFQKEQLQKMTGSYEEYRLKHQGAVAEVEGLRTELSAARGANDRMSEALAELNgvnaNDARRAMQAHSARV 364
                 6899***********************************************************776655554444444433111123344555555666 PP

  TPR_MLP1_2  99 eelekelselekrie 113
                 ++le+ l+e ++ ++
  KOO21911.1 365 QTLETALDEKQRALD 379
                 666666666666555 PP

>> Ycf54  Protein of unknown function (DUF2488)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   1.0   5.8e-05      0.21       7      36 ..       6      36 ..       4      38 .. 0.85
   2 ?   -3.2   0.1         3   1.1e+04      15      34 ..     116     136 ..     110     140 .. 0.72

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 5.8e-05
                EEEHHHHHTT.SHHHHHHHHHHHHHHHTT-- CS
       Ycf54  7 vasakfllee.epleevLkerarnykeknke 36
                +a +k lle+  +l evLker+r+++e++++
  KOO21911.1  6 AAAEKVLLEQqAELTEVLKERERHAAERQRQ 36
                5777888877699**************9986 PP

  == domain 2  score: -3.2 bits;  conditional E-value: 3
                 TT.SHHHHHHHHHHHHHHHTT CS
       Ycf54  15 ee.epleevLkerarnykekn 34 
                 +e e l   L+er+  y++++
  KOO21911.1 116 DElERLRRDLSERQIAYERAR 136
                 556788888999998888765 PP

>> DUF775  Protein of unknown function (DUF775)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.2       0.6   2.2e+03     103     131 ..     146     174 ..     113     197 .. 0.52
   2 ?   12.1   1.5   2.9e-05       0.1      73     148 ..     209     284 ..     207     310 .. 0.81

  Alignments for each domain:
  == domain 1  score: -2.0 bits;  conditional E-value: 0.6
      DUF775 103 stltiGisiEpleqvaaqlaelkaeqsas 131
                 + ++i i +   ++  +   el ++ +++
  KOO21911.1 146 KVAQIAIELKHETEKVNAARELITSMERA 174
                 33344333332222222222222222222 PP

  == domain 2  score: 12.1 bits;  conditional E-value: 2.9e-05
      DUF775  73 eKpSAifkvknekssseaesaseassaeesstltiGisiEpleqvaaqlaelkaeqsassssaassskseessaav 148
                 e +SA fk    k++ e    +++ +++ ++ + +G+ iE +e   + l+e++a+ +++ +++a+++++e ++ + 
  KOO21911.1 209 EEQSAAFKADMDKATVEIVRLRNEGHTARAEAAALGVEIERAEARLSALQEQHAADTTRLTETATRAATELARVEI 284
                 679************88888999999***************99999999999988888877776666655554444 PP

>> FlaC_arch  Flagella accessory protein C (FlaC)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.9   0.3    0.0048        17       4      30 ..      99     125 ..      97     129 .. 0.86
   2 ?   -1.5   0.0      0.96   3.4e+03      25      32 ..     242     249 ..     218     261 .. 0.56
   3 ?   -0.7   0.2      0.53   1.9e+03       8      33 ..     278     303 ..     273     308 .. 0.66
   4 ?    3.2   0.0     0.033   1.2e+02       8      34 ..     320     346 ..     319     348 .. 0.91
   5 ?   -0.9   0.0      0.64   2.3e+03       9      25 ..     357     373 ..     350     381 .. 0.62

  Alignments for each domain:
  == domain 1  score: 5.9 bits;  conditional E-value: 0.0048
   FlaC_arch   4 elEnklsklsteletvkkeneelsksv 30 
                 e E k+s l+++l++  +e+e l+ ++
  KOO21911.1  99 EYERKVSTLEVSLKSTTDELERLRRDL 125
                 56999999***9999999999999876 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 0.96
   FlaC_arch  25 elsksvee 32 
                  l  ++e+
  KOO21911.1 242 ALGVEIER 249
                 44443333 PP

  == domain 3  score: -0.7 bits;  conditional E-value: 0.53
   FlaC_arch   8 klsklsteletvkkeneelsksveel 33 
                 +l +++++l+  +++++  +++++++
  KOO21911.1 278 ELARVEIQLQLNQEQLQFQKEQLQKM 303
                 56667777777777777666666665 PP

  == domain 4  score: 3.2 bits;  conditional E-value: 0.033
   FlaC_arch   8 klsklsteletvkkeneelsksveelk 34 
                 +++ l tel+ ++  n+ +s+ + el+
  KOO21911.1 320 EVEGLRTELSAARGANDRMSEALAELN 346
                 788899***************999987 PP

  == domain 5  score: -0.9 bits;  conditional E-value: 0.64
   FlaC_arch   9 lsklsteletvkkenee 25 
                 ++ +s +++t+++ ++e
  KOO21911.1 357 MQAHSARVQTLETALDE 373
                 55556666666665555 PP

>> Filament  Intermediate filament protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.8  46.2     0.021        74      32     287 ..      14     309 ..       7     312 .. 0.74
   2 ?    5.4   0.7    0.0033        12     224     279 ..     320     375 ..     314     386 .. 0.62

  Alignments for each domain:
  == domain 1  score: 2.8 bits;  conditional E-value: 0.021
                 XXXXXXXXXXXXXXX.XXXXXXXXXXXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX...............................XXXX CS
    Filament  32 akieeleekksaevsklkelyekeleelrk.qldeltkerarlqleldnlreeledlrkkyeke...............................lnkr 98 
                  + +el e+ ++++++  e   + lee+r+ + ++++k++ar+  e+  lr +l+  r + ++                                ++++
  KOO21911.1  14 EQQAELTEVLKERERHAAERQRQVLEEARAsRAEAVAKAEARAAEERAGLRLQLDAERRRAASAidqalttaqrewmsernallleyerkvstleVSLK 112
                 333333334333333444555555555554134455555555555555555555555555555566666666777999999999999999999855555 PP

                 XXXXXXXXXXXXXXXXXXX....XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX..XXXXXXXXXXXXXXXXXXXXX....XXXXXXXXXXXXXX CS
    Filament  99 eevEaelkalrkdldeatl....arvdLekkvesLkeelaflkkvheeEvkelqkqvs..eqvlvevdaarkldLteilke....iraqyeelaeknre 187
                  ++ +el+ lr+dl e ++    ar+d+e++ ++   ++a+  k+  e v+  ++ ++  e++   +  +++  Lt++       ir+q  +  +k+ e
  KOO21911.1 113 -STTDELERLRRDLSERQIayerARADVERRADEKVAQIAIELKHETEKVNAARELITsmERAAARTTREHTAALTQAKDAsdvlIREQ-GQRFRKSLE 209
                 .55679*********9988444459***************9999888889999998864333444444444444665533222323444.455677888 PP

                 XXXXXXXXXXXXXXXXXXXXXXXXXX-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
    Filament 188 eaeewykskleelqeaaeknsealrsakeeitelrrqiqsleieleslkkqkasleaqlaeleerleaeleklqeklseleeelaeireemarqlreYq 286
                 e  + +k+ +++++ ++ +  ++ ++a+ e + l  +i++ e+ l++l++q+a+  ++l+e+  r ++el++++ +l+ ++e+l+  +e+++++   Y+
  KOO21911.1 210 EQSAAFKADMDKATVEIVRLRNEGHTARAEAAALGVEIERAEARLSALQEQHAADTTRLTETATRAATELARVEIQLQLNQEQLQFQKEQLQKMTGSYE 308
                 88889****************************************************************************************999998 PP

                 H CS
    Filament 287 e 287
                 e
  KOO21911.1 309 E 309
                 6 PP

  == domain 2  score: 5.4 bits;  conditional E-value: 0.0033
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
    Filament 224 qiqsleieleslkkqkasleaqlaeleerleaeleklqeklseleeelaeireema 279
                 +++ l++el++ +++++ + ++lael+   +++++++ ++ s+  + l+++ +e +
  KOO21911.1 320 EVEGLRTELSAARGANDRMSEALAELNGVNANDARRAMQAHSARVQTLETALDEKQ 375
                 57788888888888888888888888876665554443333333333333333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (395 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2506  (0.139774); expected 358.6 (0.02)
Passed bias filter:                      496  (0.0276647); expected 358.6 (0.02)
Passed Vit filter:                        82  (0.0045736); expected 17.9 (0.001)
Passed Fwd filter:                        35  (0.00195214); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 1.10u 0.38s 00:00:01.48 Elapsed: 00:00:00.55
# Mc/sec: 2154.75
//
Query:       KOO21912.1  [L=102]
Description: hypothetical protein Ctob_002666 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.28   10.8   2.4       0.34   10.5   2.4    1.1  1  PP2C_2    Protein phosphatase 2C


Domain annotation for each model (and alignments):
>> PP2C_2  Protein phosphatase 2C
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   2.4   1.9e-05      0.34      20      63 ..      27      70 ..      19      82 .. 0.79

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 1.9e-05
      PP2C_2 20 tdsggsllaVaDGaGSakrSerGariaveavvealaelleseee 63
                +++g + la a G GS k+S+ +a++  e +  a a++++++ e
  KOO21912.1 27 VQRGLDELAAAGGIGSGKGSGDAAALQMESALDAAAQQVAEALE 70
                56677779*********************999998888854433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (102 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       817  (0.0455686); expected 358.6 (0.02)
Passed bias filter:                      557  (0.031067); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.28s 00:00:00.64 Elapsed: 00:00:00.41
# Mc/sec: 749.94
//
Query:       KOO21913.1  [L=312]
Description: choline dehydrogenase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    4.2e-32  111.6   0.0    5.7e-32  111.2   0.0    1.2  1  GMC_oxred_C  GMC oxidoreductase


Domain annotation for each model (and alignments):
>> GMC_oxred_C  GMC oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  111.2   0.0   3.2e-36   5.7e-32       1     144 []     132     264 ..     132     264 .. 0.97

  Alignments for each domain:
  == domain 1  score: 111.2 bits;  conditional E-value: 3.2e-36
                  ----EEEEESTT-TCCEEEEE--TT-SHHHHHHHHHHHHHHHHHCTSGGG.TTEECCEECCCTTTTS.HCHHCHHCHHCHHHHH-EE-S--B-TT-B- CS
  GMC_oxred_C   1 PesrGrvtlsssdptgaplidpnylsdprdlaalvealkaarkilaaaal.dvleeeltpgaaeetsdaavesdealekfvkeavltsaHplGtcrMG 97 
                  P+s+G+v+++ +dp++ap i+ nyl +p+d ++l+++++ ark++++ al  v   e++pga       +v+sd+a++++++e+ ++ +  +G+c++G
   KOO21913.1 132 PRSTGTVRITCADPSVAPEIKCNYLASPEDSQTLARGIELARKLATSGALgEVSLDEVYPGA-------HVQSDAAVDAYIRETLHSANGLSGGCCLG 222
                  89**********************************************87888888888888.......***************************** PP

                  STCGCBSB-TTSBBTT-CSEEE-SGGGSSS--SS-THHHHHHHHHHH CS
  GMC_oxred_C  98 adpkdsVVDsdlrvhgvdnLrVvDaSvfPsapganptltilalAeka 144
                        VVD++lrv+g+++LrVvDaSv+P++pga+  l++ ++Ae+a
   KOO21913.1 223 -----HVVDEQLRVRGIRGLRVVDASVMPRIPGAQLALPTNMIAERA 264
                  .....****************************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (312 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       271  (0.0151152); expected 358.6 (0.02)
Passed bias filter:                      236  (0.013163); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.25s 00:00:00.68 Elapsed: 00:00:00.41
# Mc/sec: 2308.23
//
Query:       KOO21914.1  [L=404]
Description: glucan 1,3-beta-glucosidase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (404 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       344  (0.0191868); expected 358.6 (0.02)
Passed bias filter:                      291  (0.0162307); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.46u 0.25s 00:00:00.71 Elapsed: 00:00:00.40
# Mc/sec: 2995.60
//
Query:       KOO21915.1  [L=1143]
Description: wd g-beta repeat-containing protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.3e-13   51.2   0.2      0.058   14.3   0.0    7.3  7  WD40         WD domain, G-beta repeat
    5.3e-05   23.4   0.0       0.79   10.1   0.0    4.7  5  ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain
  ------ inclusion threshold ------
      0.012   14.9   0.1        0.4    9.9   0.0    2.2  2  RAB3GAP2_N   Rab3 GTPase-activating protein regulatory subuni


Domain annotation for each model (and alignments):
>> WD40  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.6   0.0     0.049   2.9e+02      13      37 ..      16      39 ..       8      40 .. 0.84
   2 !   14.3   0.0   9.6e-06     0.058       2      38 .]      45      83 ..      44      83 .. 0.87
   3 !    6.3   0.0    0.0033        20      14      37 ..     269     292 ..     259     293 .. 0.93
   4 !    6.0   0.0    0.0039        23      13      37 ..     314     338 ..     304     339 .. 0.82
   5 ?    0.6   0.0       0.2   1.2e+03      13      38 .]     355     380 ..     342     380 .. 0.68
   6 !    7.7   0.0    0.0012         7       9      37 ..     522     551 ..     517     552 .. 0.86
   7 ?    2.7   0.0     0.046   2.7e+02      14      37 ..     608     631 ..     595     632 .. 0.80

  Alignments for each domain:
  == domain 1  score: 2.6 bits;  conditional E-value: 0.049
                EEEEEEETTSSEEEEEETTSEEEEE CS
        WD40 13 vtslafspdgawlasGsdDgtvriW 37
                 t +a+ +d+++l+++s    ++++
  KOO21915.1 16 LTRIAYTSDSKFLLCCS-GYVIKLF 39
                58999*********999.8888876 PP

  == domain 2  score: 14.3 bits;  conditional E-value: 9.6e-06
                EEEEEEESS.SSEEEEEEETTSSE.EEEEETTSEEEEEE CS
        WD40  2 qclrtltGH.ssvtslafspdgaw.lasGsdDgtvriWd 38
                 ++rtl GH   vt++  +p   +  +s+s Dg + +Wd
  KOO21915.1 45 AQVRTLVGHtAEVTAVVQHPTLELqAFSASVDGRILLWD 83
                5799*****777****999999997458999*******9 PP

  == domain 3  score: 6.3 bits;  conditional E-value: 0.0033
                 EEEEEETTSSEEEEEETTSEEEEE CS
        WD40  14 tslafspdgawlasGsdDgtvriW 37 
                 t++a sp  ++ asG+d g + +W
  KOO21915.1 269 TCFALSPTEPLAASGDDCGRICLW 292
                 8**************99******9 PP

  == domain 4  score: 6.0 bits;  conditional E-value: 0.0039
                 EEEEEEETTSSEEEEEETTSEEEEE CS
        WD40  13 vtslafspdgawlasGsdDgtvriW 37 
                   +lafs dga+l s+++ g +  W
  KOO21915.1 314 LGALAFSADGAYLYSAGREGVLVSW 338
                 6789**********99999998888 PP

  == domain 5  score: 0.6 bits;  conditional E-value: 0.2
                 EEEEEEETTSSE..EEEEETTSEEEEEE CS
        WD40  13 vtslafspdgaw..lasGsdDgtvriWd 38 
                  t+la+  dg+   ++ G  D+tvr+ d
  KOO21915.1 355 LTALATTADGTGaaVL-GA-DNTVRLID 380
                 5777766666662233.67.*****965 PP

  == domain 6  score: 7.7 bits;  conditional E-value: 0.0012
                 SS.SSEEEEEEETTSSEEEEEETTSEEEEE CS
        WD40   9 GH.ssvtslafspdgawlasGsdDgtvriW 37 
                  H + vt+l f+p   ++as+  D + ++W
  KOO21915.1 522 PHqGRVTGLTFHPRLLLVASAATDAKFKLW 551
                 58566**************9988******* PP

  == domain 7  score: 2.7 bits;  conditional E-value: 0.046
                 EEEEEETTSSEEEEEETTSEEEEE CS
        WD40  14 tslafspdgawlasGsdDgtvriW 37 
                 t++afs dg++la +     v +W
  KOO21915.1 608 TAVAFSADGTLLAVAYAPDVVTLW 631
                 89**********987655555555 PP

>> ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.0      0.46   2.8e+03      42      85 ..      17      58 ..       9      96 .. 0.59
   2 ?   -0.7   0.0      0.29   1.7e+03       3      62 ..     273     335 ..     271     345 .. 0.70
   3 ?    4.0   0.0      0.01        62      40      75 ..     354     389 ..     348     393 .. 0.85
   4 ?    1.8   0.0     0.049   2.9e+02      18      64 ..     502     550 ..     482     553 .. 0.76
   5 !   10.1   0.0   0.00013      0.79      38      76 ..     604     642 ..     596     651 .. 0.90

  Alignments for each domain:
  == domain 1  score: -1.3 bits;  conditional E-value: 0.46
  ANAPC4_WD40 42 rsLaWkpdgklLavaysdgevrlldaesgkvvhslsvksekavt 85
                 + +a+  d k+L   +s   ++l++  +g  v++l  ++ + vt
   KOO21915.1 17 TRIAYTSDSKFLL-CCSGYVIKLFSTVTGAQVRTLVGHTAE-VT 58
                 5566666666654.345555666666666666655444332.33 PP

  == domain 2  score: -0.7 bits;  conditional E-value: 0.29
  ANAPC4_WD40   3 wcptmDLiAlatedgellvfRlngqrvwtl...eedkedsevrsLaWkpdgklLavaysdgev 62 
                   +pt  L A + + g++ + R++g     l   e++ + ++  +La++ dg  L  a  +g +
   KOO21915.1 273 LSPTEPLAASGDDCGRICLWRVDGGASGPLrasERHWHAQRLGALAFSADGAYLYSAGREGVL 335
                  577778888888888888888887433322333445566788899999999999998888765 PP

  == domain 3  score: 4.0 bits;  conditional E-value: 0.01
  ANAPC4_WD40  40 evrsLaWkpdgklLavaysdgevrlldaesgkvvhs 75 
                    ++La   dg+  av  +d++vrl+d    +v  +
   KOO21915.1 354 PLTALATTADGTGAAVLGADNTVRLIDLARNEVRLH 389
                  6688899999*****************999988766 PP

  == domain 4  score: 1.8 bits;  conditional E-value: 0.049
  ANAPC4_WD40  18 ellvfRl.ngqrvwtl.eedkedsevrsLaWkpdgklLavaysdgevrl 64 
                   l + Rl +g+ v  +   + ++++v++L ++p   l a a  d + +l
   KOO21915.1 502 ALKLWRLsEGEWVLAArVPQPHQGRVTGLTFHPRLLLVASAATDAKFKL 550
                  556666633455555565677899*********9999999999988877 PP

  == domain 5  score: 10.1 bits;  conditional E-value: 0.00013
  ANAPC4_WD40  38 dsevrsLaWkpdgklLavaysdgevrlldaesgkvvhsl 76 
                  +   +++a++ dg+lLavay+   v l d  + +++hsl
   KOO21915.1 604 QTAATAVAFSADGTLLAVAYAPDVVTLWDPLTNELLHSL 642
                  567899*****************************9987 PP

>> RAB3GAP2_N  Rab3 GTPase-activating protein regulatory subunit N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.5   0.1     0.012        69     303     344 ..      50      92 ..      41      93 .. 0.86
   2 ?    9.9   0.0   6.8e-05       0.4     306     336 ..     264     294 ..     255     298 .. 0.89

  Alignments for each domain:
  == domain 1  score: 2.5 bits;  conditional E-value: 0.012
  RAB3GAP2_N 303 LkDskRegesivlsPsgrlaavtDsL.gRVlLlDvqagvvvRl 344
                 L  +  e++ +v  P+ +l a++ s  gR+lL+D+ +  v+R+
  KOO21915.1  50 LVGHTAEVTAVVQHPTLELQAFSASVdGRILLWDLDEAKVLRV 92 
                 55566788999999**999999999868************996 PP

  == domain 2  score: 9.9 bits;  conditional E-value: 6.8e-05
  RAB3GAP2_N 306 skRegesivlsPsgrlaavtDsLgRVlLlDv 336
                  +Re+++ +lsP++ laa  D+ gR+ L+ v
  KOO21915.1 264 QRREMTCFALSPTEPLAASGDDCGRICLWRV 294
                 68**************************866 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1143 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       682  (0.0380389); expected 358.6 (0.02)
Passed bias filter:                      463  (0.0258241); expected 358.6 (0.02)
Passed Vit filter:                        52  (0.00290033); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.81u 0.27s 00:00:01.08 Elapsed: 00:00:00.44
# Mc/sec: 7807.17
//
Query:       KOO21916.1  [L=381]
Description: protein nlrc3 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.6e-16   58.2  19.1    0.00036   20.3   0.1    6.4  6  LRR_6     Leucine Rich repeat
    9.6e-07   29.0   2.1      0.012   16.0   0.3    3.4  3  LRR_4     Leucine Rich repeats (2 copies)


Domain annotation for each model (and alignments):
>> LRR_6  Leucine Rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   0.3     5e-07    0.0045       1      24 []      58      81 ..      58      81 .. 0.97
   2 !    8.4   0.1   0.00027       2.4       1      22 [.      86     107 ..      86     109 .. 0.87
   3 !   19.3   0.2   8.5e-08   0.00076       2      24 .]     115     137 ..     114     137 .. 0.95
   4 !   20.3   0.1   4.1e-08   0.00036       2      24 .]     143     165 ..     142     165 .. 0.96
   5 ?    1.7   0.1     0.038   3.4e+02       4      24 .]     173     193 ..     170     193 .. 0.87
   6 ?    0.6   0.0     0.086   7.7e+02       7      23 ..     216     232 ..     212     232 .. 0.86

  Alignments for each domain:
  == domain 1  score: 16.9 bits;  conditional E-value: 5e-07
       LRR_6  1 snthLteLdLsgNdIgDeGaeaLa 24
                +n hL+ LdL + ++gD+ a+aLa
  KOO21916.1 58 HNAHLKVLDLHDTKLGDDDAIALA 81
                89*********************8 PP

  == domain 2  score: 8.4 bits;  conditional E-value: 0.00027
       LRR_6   1 snthLteLdLsgNdIgDeGaea 22 
                 +n+hL+ L++  N I D G  a
  KOO21916.1  86 NNSHLKRLHMHNNRIYDRGTAA 107
                 7**************9988655 PP

  == domain 3  score: 19.3 bits;  conditional E-value: 8.5e-08
       LRR_6   2 nthLteLdLsgNdIgDeGaeaLa 24 
                 n++L+ L+L +N++gDeGa+ La
  KOO21916.1 115 NNCLEFLSLGSNGVGDEGAKGLA 137
                 99******************997 PP

  == domain 4  score: 20.3 bits;  conditional E-value: 4.1e-08
       LRR_6   2 nthLteLdLsgNdIgDeGaeaLa 24 
                 n+ L+ LdL  N IgDeGa aLa
  KOO21916.1 143 NSMLRRLDLYLNLIGDEGAAALA 165
                 99*******************98 PP

  == domain 5  score: 1.7 bits;  conditional E-value: 0.038
       LRR_6   4 hLteLdLsgNdIgDeGaeaLa 24 
                  L+ L+L  N I  +G+ aLa
  KOO21916.1 173 GLRMLHLDTNRIEEAGGLALA 193
                 577799999**********98 PP

  == domain 6  score: 0.6 bits;  conditional E-value: 0.086
       LRR_6   7 eLdLsgNdIgDeGaeaL 23 
                 eL L++N +g   +eaL
  KOO21916.1 216 ELGLMYNPLGSLAVEAL 232
                 799*******9888886 PP

>> LRR_4  Leucine Rich repeats (2 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.3   1.3e-06     0.012       2      37 ..      61     101 ..      60     103 .. 0.80
   2 ?    1.9   0.0     0.037   3.3e+02       3      15 ..     118     130 ..     113     141 .. 0.80
   3 !    8.5   0.0    0.0003       2.7       2      39 ..     145     187 ..     144     191 .. 0.80

  Alignments for each domain:
  == domain 1  score: 16.0 bits;  conditional E-value: 1.3e-06
                 S--EEE--SS---E-S-......HHH-TT--EEE-.-S---- CS
       LRR_4   2 nLevLdLsnNqltdipl......leklpnLkeLdLsgNnlit 37 
                 +L+vLdL++++l d +       l+++ +Lk L++ +Nn+i 
  KOO21916.1  61 HLKVLDLHDTKLGDDDAialangLRNNSHLKRLHM-HNNRIY 101
                 69***********9888774444447777******.888885 PP

  == domain 2  score: 1.9 bits;  conditional E-value: 0.037
                 --EEE--SS---E CS
       LRR_4   3 LevLdLsnNqltd 15 
                 Le+L+L++N + d
  KOO21916.1 118 LEFLSLGSNGVGD 130
                 8889999888877 PP

  == domain 3  score: 8.5 bits;  conditional E-value: 0.0003
                 S--EEE--SS---E-S-..HH...H.-TT--EEE-.-S-----G CS
       LRR_4   2 nLevLdLsnNqltdipl..le...k.lpnLkeLdLsgNnlitdl 39 
                  L+ LdL  N + d +   l+   k ++ L+ L+L + n+i+  
  KOO21916.1 145 MLRRLDLYLNLIGDEGAaaLAdalKlNKGLRMLHL-DTNRIEEA 187
                 69******88****999775578886888******.66688765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (381 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       353  (0.0196888); expected 358.6 (0.02)
Passed bias filter:                      229  (0.0127726); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.46u 0.25s 00:00:00.71 Elapsed: 00:00:00.41
# Mc/sec: 2765.22
//
Query:       KOO21917.1  [L=581]
Description: wd40 repeat-like protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.1e-34  117.8  10.9      6e-09   36.4   0.4    5.2  4  WD40         WD domain, G-beta repeat
    4.7e-14   52.7   0.0    5.8e-08   32.8   0.0    2.2  2  DUF3431      Protein of unknown function (DUF3431)
    8.8e-09   34.8   1.0       0.14   11.1   0.0    3.4  3  Ge1_WD40     WD40 region of Ge1, enhancer of mRNA-decapping p
    1.5e-08   34.8   0.3      0.068   13.5   0.0    4.6  5  ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain
    2.3e-07   30.5   0.1       0.93    9.5   0.0    3.9  3  PD40         WD40-like Beta Propeller Repeat
     0.0001   21.8   0.6       0.93    8.8   0.1    3.0  3  Nbas_N       Neuroblastoma-amplified sequence, N terminal
     0.0056   15.0   0.0       0.23    9.7   0.0    2.3  2  Frtz         WD repeat-containing and planar cell polarity ef
  ------ inclusion threshold ------
      0.016   15.3   0.0         16    5.7   0.0    4.0  4  DCX          Doublecortin


Domain annotation for each model (and alignments):
>> WD40  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.4   0.4   2.7e-12     6e-09       8      38 .]     352     383 ..     344     383 .. 0.86
   2 !   33.6   0.0     2e-11   4.6e-08       8      38 .]     395     426 ..     390     426 .. 0.92
   3 !   18.9   0.2   9.3e-07    0.0021       8      38 .]     438     467 ..     431     467 .. 0.86
   4 !   32.4   0.1   4.8e-11   1.1e-07       8      38 .]     479     510 ..     472     510 .. 0.90

  Alignments for each domain:
  == domain 1  score: 36.4 bits;  conditional E-value: 2.7e-12
                 ESSSS.EEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40   8 tGHss.vtslafspdgawlasGsdDgtvriWd 38 
                  +Hs+ ++s+afspdg+ ++sGsdD+t+++Wd
  KOO21917.1 352 NTHSDtIRSVAFSPDGTKIVSGSDDKTIKVWD 383
                 479556*************************9 PP

  == domain 2  score: 33.6 bits;  conditional E-value: 2e-11
                 ESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40   8 tGH.ssvtslafspdgawlasGsdDgtvriWd 38 
                  +H + + s+afspdg+ ++sGs+D+t+++Wd
  KOO21917.1 395 NAHsNYIMSVAFSPDGTKIVSGSYDKTIKVWD 426
                 489777*************************9 PP

  == domain 3  score: 18.9 bits;  conditional E-value: 9.3e-07
                 ESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40   8 tGH.ssvtslafspdgawlasGsdDgtvriWd 38 
                 ++H ++++s+afsp++   +++   gt+++Wd
  KOO21917.1 438 DAHsNGINSVAFSPSKIV-SACN-GGTIKVWD 467
                 58*888*********999.4466.*******9 PP

  == domain 4  score: 32.4 bits;  conditional E-value: 4.8e-11
                 ESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40   8 tGH.ssvtslafspdgawlasGsdDgtvriWd 38 
                  +H ++v s+afspdg+ ++sGs D+t+++Wd
  KOO21917.1 479 NAHsGWVMSVAFSPDGTKIVSGSFDKTIKVWD 510
                 489666*************************9 PP

>> DUF3431  Protein of unknown function (DUF3431)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.7   0.0     1e-06    0.0023      24      77 ..      40     100 ..      10     114 .. 0.72
   2 !   32.8   0.0   2.6e-11   5.8e-08     142     201 ..     158     225 ..     132     233 .. 0.89

  Alignments for each domain:
  == domain 1  score: 17.7 bits;  conditional E-value: 1e-06
     DUF3431  24 aiYvvddp.....saeltvp.ankGreamaYltyiidnYds.LpdvvvFvhahraawhnda 77 
                 ++Y    +     +a+ +v  +n Gre+  Yl++i+ nY++ L+++++Fv  + a+ h+ +
  KOO21917.1  40 VVYDKSGSavalpTADEHVRlRNIGRESESYLQHIVRNYEQgLAAYTLFVQDDIASVHVPK 100
                 44444422334444444554489****************86699******99998888765 PP

  == domain 2  score: 32.8 bits;  conditional E-value: 2.6e-11
     DUF3431 142 evpevvaapcCaqFavsrerirkrpreeYvrlrqwllete........lddelsGrvleylWhilFgk 201
                  +p++ +++ Ca   vsrerir+rpr+ Y+rl  w  e+e         ++e + +vle+lW+++F +
  KOO21917.1 158 AMPSEYETNVCAILLVSRERIRRRPRAFYERLLAWHGESEsapdrkrrNHEEQVPWVLEHLWQLIFFE 225
                 578888999*****************************9999****99889999************55 PP

>> Ge1_WD40  WD40 region of Ge1, enhancer of mRNA-decapping protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.7   0.0   0.00016      0.36     184     215 ..     351     383 ..     335     393 .. 0.86
   2 !   11.1   0.0   6.2e-05      0.14     185     216 ..     395     427 ..     386     440 .. 0.86
   3 !   10.9   0.0   7.3e-05      0.16     181     215 ..     475     510 ..     434     521 .. 0.72

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 0.00016
    Ge1_WD40 184 ieehs.liveaafspdGtalatasedGevkffq 215
                  + hs +i + afspdGt +   s d ++k + 
  KOO21917.1 351 TNTHSdTIRSVAFSPDGTKIVSGSDDKTIKVWD 383
                 556777999*********************985 PP

  == domain 2  score: 11.1 bits;  conditional E-value: 6.2e-05
    Ge1_WD40 185 eehs.liveaafspdGtalatasedGevkffqv 216
                 + hs  i++ afspdGt +   s d ++k + +
  KOO21917.1 395 NAHSnYIMSVAFSPDGTKIVSGSYDKTIKVWDL 427
                 456658***********************9986 PP

  == domain 3  score: 10.9 bits;  conditional E-value: 7.3e-05
    Ge1_WD40 181 llkieehs.liveaafspdGtalatasedGevkffq 215
                   k + hs  +++ afspdGt +   s d ++k + 
  KOO21917.1 475 SEKTNAHSgWVMSVAFSPDGTKIVSGSFDKTIKVWD 510
                 3345566667***********************996 PP

>> ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.6   0.0     0.075   1.7e+02      39      67 ..      35      63 ..      24      88 .. 0.81
   2 !   13.5   0.0     3e-05     0.068      33      89 ..     350     406 ..     333     408 .. 0.84
   3 !    6.9   0.0    0.0035       7.9      34      88 ..     394     448 ..     386     452 .. 0.77
   4 ?    4.2   0.1     0.024        55      28      75 ..     423     476 ..     412     482 .. 0.84
   5 !    8.7   0.0   0.00096       2.2      29      75 ..     465     519 ..     454     529 .. 0.82

  Alignments for each domain:
  == domain 1  score: 2.6 bits;  conditional E-value: 0.075
  ANAPC4_WD40 39 sevrsLaWkpdgklLavaysdgevrllda 67
                   vrs+ + ++g+  a  ++d +vrl ++
   KOO21917.1 35 AVVRSVVYDKSGSAVALPTADEHVRLRNI 63
                 5699*********************9876 PP

  == domain 2  score: 13.5 bits;  conditional E-value: 3e-05
  ANAPC4_WD40  33 eedkedsevrsLaWkpdgklLavaysdgevrlldaesgkvvhslsvksekavtclgW 89 
                  ++++++ ++rs+a++pdg+ ++ + +d ++++ d+ + +++++ + ++++ ++++ +
   KOO21917.1 350 KTNTHSDTIRSVAFSPDGTKIVSGSDDKTIKVWDSGKLDMLNEKTNAHSNYIMSVAF 406
                  46678899*****************************99999887777777877765 PP

  == domain 3  score: 6.9 bits;  conditional E-value: 0.0035
  ANAPC4_WD40  34 edkedsevrsLaWkpdgklLavaysdgevrlldaesgkvvhslsvksekavtclg 88 
                  ++++++ + s+a++pdg+ ++ +  d ++++ d  +  ++++ + ++++ ++++ 
   KOO21917.1 394 TNAHSNYIMSVAFSPDGTKIVSGSYDKTIKVWDLATLGLLSEKTDAHSNGINSVA 448
                  56778899*************************9886666554444444566665 PP

  == domain 4  score: 4.2 bits;  conditional E-value: 0.024
  ANAPC4_WD40  28 rvwtl........eedkedsevrsLaWkpdgklLavaysdgevrlldaesgkvvhs 75 
                  +vw+l        ++d++++ ++s+a++p+   ++ a++ g++++ d+ + +++++
   KOO21917.1 423 KVWDLatlgllseKTDAHSNGINSVAFSPSK--IVSACNGGTIKVWDSDKLEMLSE 476
                  677777777787788999999******9975..899*************9999876 PP

  == domain 5  score: 8.7 bits;  conditional E-value: 0.00096
  ANAPC4_WD40  29 vwtl........eedkedsevrsLaWkpdgklLavaysdgevrlldaesgkvvhs 75 
                  vw+         +++++++ v s+a++pdg+ ++ +  d ++++ da s +++ s
   KOO21917.1 465 VWDSdklemlseKTNAHSGWVMSVAFSPDGTKIVSGSFDKTIKVWDADSFNLLDS 519
                  55555555566577888999***************************99887766 PP

>> PD40  WD40-like Beta Propeller Repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.4   0.0    0.0019       4.3      13      24 ..     360     371 ..     350     371 .. 0.83
   2 !    9.5   0.0   0.00041      0.93       7      24 ..     397     414 ..     394     414 .. 0.85
   3 !    8.9   0.0   0.00067       1.5       7      24 ..     481     498 ..     479     498 .. 0.84

  Alignments for each domain:
  == domain 1  score: 7.4 bits;  conditional E-value: 0.0019
                 EEEE-TTSSEEE CS
        PD40  13 aPsfSPDGkrla 24 
                 + +fSPDG++++
  KOO21917.1 360 SVAFSPDGTKIV 371
                 569*******96 PP

  == domain 2  score: 9.5 bits;  conditional E-value: 0.00041
                 SSS.EEEEEE-TTSSEEE CS
        PD40   7 tpgnegaPsfSPDGkrla 24 
                 ++ ++++ +fSPDG++++
  KOO21917.1 397 HSNYIMSVAFSPDGTKIV 414
                 56678999********96 PP

  == domain 3  score: 8.9 bits;  conditional E-value: 0.00067
                 SSS.EEEEEE-TTSSEEE CS
        PD40   7 tpgnegaPsfSPDGkrla 24 
                 ++g+ ++ +fSPDG++++
  KOO21917.1 481 HSGWVMSVAFSPDGTKIV 498
                 66777889********96 PP

>> Nbas_N  Neuroblastoma-amplified sequence, N terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.7   0.0     0.029        64     219     261 ..     345     387 ..     323     397 .. 0.77
   2 !    8.8   0.1   0.00042      0.93     191     274 ..     364     443 ..     357     449 .. 0.74
   3 !    8.6   0.1   0.00048       1.1     219     262 ..     471     515 ..     452     522 .. 0.83

  Alignments for each domain:
  == domain 1  score: 2.7 bits;  conditional E-value: 0.029
      Nbas_N 219 lklysrkaeekdgvfkmslspdgtllavihfsgklsiwdipsl 261
                   +  ++++  d +  +++spdgt++        + +wd   l
  KOO21917.1 345 NCVAEKTNTHSDTIRSVAFSPDGTKIVSGSDDKTIKVWDSGKL 387
                 4455677889999************999888888889986655 PP

  == domain 2  score: 8.8 bits;  conditional E-value: 0.00042
      Nbas_N 191 spyykqvtsyeddvgalakkrgllkllslklysrkaeekdgvfkmslspdgtllavihfsgklsiwdipslkqrgeweqeeqpg 274
                 sp   ++ s  dd + +   +g l +l+ k    ++   + ++ +++spdgt++    +   + +wd+ +l + +e  + +  g
  KOO21917.1 364 SPDGTKIVSGSDDKTIKVWDSGKLDMLNEK----TNAHSNYIMSVAFSPDGTKIVSGSYDKTIKVWDLATLGLLSEKTDAHSNG 443
                 566666666666666666667766666644....56677889999***********************9998877766666555 PP

  == domain 3  score: 8.6 bits;  conditional E-value: 0.00048
      Nbas_N 219 lklysrkaeekdg.vfkmslspdgtllavihfsgklsiwdipslk 262
                 l++ s k++ + g v+ +++spdgt++    f   + +wd  s++
  KOO21917.1 471 LEMLSEKTNAHSGwVMSVAFSPDGTKIVSGSFDKTIKVWDADSFN 515
                 5667776666666488999*********************99987 PP

>> Frtz  WD repeat-containing and planar cell polarity effector protein Fritz
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.7   0.0    0.0001      0.23     259     330 ..     355     429 ..     339     442 .. 0.76
   2 ?    2.7   0.0     0.013        30     261     289 ..     484     512 ..     463     516 .. 0.88

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 0.0001
        Frtz 259 raqvislafnpdedkLllGceDssviLydeerkitklvkaevvPs...liswhpdsaillvasergelqifDlaL 330
                    + s+af+pd  k++ G+ D+++ ++d+ +   +  k++   +    +++ pd++ ++ +s    ++++Dla 
  KOO21917.1 355 SDTIRSVAFSPDGTKIVSGSDDKTIKVWDSGKLDMLNEKTNAHSNyimSVAFSPDGTKIVSGSYDKTIKVWDLAT 429
                 556889***********************986544444555554411157899*******************984 PP

  == domain 2  score: 2.7 bits;  conditional E-value: 0.013
        Frtz 261 qvislafnpdedkLllGceDssviLydee 289
                  v+s+af+pd  k++ G+ D+++ ++d++
  KOO21917.1 484 WVMSVAFSPDGTKIVSGSFDKTIKVWDAD 512
                 589********************999986 PP

>> DCX  Doublecortin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.0   0.0      0.21   4.8e+02       8      22 ..      18      32 ..      17      49 .. 0.77
   2 ?    0.7   0.0      0.25   5.6e+02      17      43 ..     347     375 ..     342     376 .. 0.71
   3 ?    1.1   0.0       0.2   4.4e+02      14      40 ..     387     415 ..     386     418 .. 0.81
   4 ?    5.7   0.0     0.007        16      14      40 ..     471     499 ..     468     503 .. 0.90

  Alignments for each domain:
  == domain 1  score: 1.0 bits;  conditional E-value: 0.21
         DCX  8 rsfealLdeltekvk 22
                rsfe  L++l+++++
  KOO21917.1 18 RSFEPWLADLSRALE 32
                79**********963 PP

  == domain 2  score: 0.7 bits;  conditional E-value: 0.25
         DCX  17 ltekvklpfg.Vrkly.tldGrkvvssld 43 
                 + ek + ++  +r +  ++dG+k+vs  d
  KOO21917.1 347 VAEKTNTHSDtIRSVAfSPDGTKIVSGSD 375
                 56676776667888744*****9999555 PP

  == domain 3  score: 1.1 bits;  conditional E-value: 0.2
         DCX  14 Ldeltekvklpfg.Vrkly.tldGrkvvs 40 
                 Ld+l+ek ++++  +  +  ++dG+k+vs
  KOO21917.1 387 LDMLNEKTNAHSNyIMSVAfSPDGTKIVS 415
                 79999999997777777744*****9987 PP

  == domain 4  score: 5.7 bits;  conditional E-value: 0.007
         DCX  14 Ldeltekvklpfg.Vrkly.tldGrkvvs 40 
                 L++l+ek ++++g V  +  ++dG+k+vs
  KOO21917.1 471 LEMLSEKTNAHSGwVMSVAfSPDGTKIVS 499
                 899************99966*****9998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (581 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       382  (0.0213063); expected 358.6 (0.02)
Passed bias filter:                      326  (0.0181828); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.56u 0.27s 00:00:00.83 Elapsed: 00:00:00.42
# Mc/sec: 4163.94
//
Query:       KOO21918.1  [L=445]
Description: hypothetical protein Ctob_001842, partial [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    0.00013   21.9  23.5      0.016   15.2   0.3    6.4  7  Kelch_4   Galactose oxidase, central domain
     0.0025   18.0   3.2        5.2    7.5   0.0    5.0  5  Kelch_6   Kelch motif
  ------ inclusion threshold ------
      0.021   15.1  23.4       0.83   10.0   0.1    5.8  6  Kelch_3   Galactose oxidase, central domain


Domain annotation for each model (and alignments):
>> Kelch_4  Galactose oxidase, central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.4   0.0     0.013        76       4      24 ..     123     143 ..     119     151 .. 0.82
   2 ?   -1.0   0.1       0.3   1.8e+03       1      10 [.     174     183 ..     174     188 .. 0.78
   3 ?    3.5   1.5     0.012        73      16      32 ..     200     221 ..     199     222 .. 0.90
   4 ?   -1.9   0.0      0.58   3.5e+03       6      22 ..     223     240 ..     222     241 .. 0.75
   5 !   15.2   0.3   2.7e-06     0.016       2      34 ..     266     298 ..     265     299 .. 0.87
   6 !    3.9   0.0     0.009        54       2      23 ..     325     346 ..     324     365 .. 0.90
   7 !    6.7   1.3    0.0012       7.1       1      34 [.     395     428 ..     395     436 .. 0.77

  Alignments for each domain:
  == domain 1  score: 3.4 bits;  conditional E-value: 0.013
     Kelch_4   4 ghsatsipdgtiylfGGrged 24 
                 g+s++++    + lfGGr + 
  KOO21918.1 123 GASLCALAPQQLCLFGGRDSI 143
                 5679999889999*****986 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 0.3
     Kelch_4   1 pRaghsatsi 10 
                 +R++h+a  +
  KOO21918.1 174 ARCYHTAALW 183
                 7*****9665 PP

  == domain 3  score: 3.5 bits;  conditional E-value: 0.012
     Kelch_4  16 ylfGGrgedg.....tllndly 32 
                 ++fGG+g+ +      ll+dl+
  KOO21918.1 200 VVFGGAGDGDgqgneNLLSDLW 221
                 69******76999*9*****99 PP

  == domain 4  score: -1.9 bits;  conditional E-value: 0.58
     Kelch_4   6 satsipd.gtiylfGGrg 22 
                 +++s+p   + ++ GG++
  KOO21918.1 223 ATVSVPVpLSAAVAGGAT 240
                 566776668999****87 PP

  == domain 5  score: 15.2 bits;  conditional E-value: 2.7e-06
     Kelch_4   2 Raghsatsi.pdgtiylfGGrgedgtllndlyll 34 
                 R +h++ ++   g ++++GG ++  ++l+d++ll
  KOO21918.1 266 RSSHVCAAWaAAGALVIHGGLSSG-GVLGDTWLL 298
                 8899999995569**********6.6******97 PP

  == domain 6  score: 3.9 bits;  conditional E-value: 0.009
     Kelch_4   2 RaghsatsipdgtiylfGGrge 23 
                 Ra+hs  ++   t+ +f G+ e
  KOO21918.1 325 RAHHSGGVVAESTLLIFSGQDE 346
                 99*******9*********987 PP

  == domain 7  score: 6.7 bits;  conditional E-value: 0.0012
     Kelch_4   1 pRaghsatsipdgtiylfGGrgedgtllndlyll 34 
                 +R++ + t+i++  +++fGG g+d ++++ ++++
  KOO21918.1 395 ARIDGAGTAINGVGLIVFGGVGDDFGFVSATDAW 428
                 799*******7669999***99984455555544 PP

>> Kelch_6  Kelch motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.4   0.0     0.035   2.1e+02       5      45 ..     124     168 ..     119     173 .. 0.67
   2 ?   -2.5   0.1       1.2   7.2e+03       1      10 [.     174     183 ..     174     185 .. 0.87
   3 ?    2.1   0.0     0.044   2.6e+02      15      32 ..     200     222 ..     199     222 .. 0.91
   4 !    7.5   0.0   0.00087       5.2       2      41 ..     325     365 ..     325     370 .. 0.87
   5 ?    1.8   0.1     0.055   3.3e+02       8      34 ..     402     431 ..     395     436 .. 0.71

  Alignments for each domain:
  == domain 1  score: 2.4 bits;  conditional E-value: 0.035
     Kelch_6   5 hslvs.vggkiYifGGytds.spylnkvwvydpetks..Weqlpp 45 
                  sl++ +  ++++fGG++   + +l    + ++++++  W+ l++
  KOO21918.1 124 ASLCAlAPQQLCLFGGRDSIsGDTLGATRLVSVRSGVavWDVLTS 168
                 5554438889*******8767777777676777766655666655 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 1.2
     Kelch_6   1 praghslvsv 10 
                 +r++h+++++
  KOO21918.1 174 ARCYHTAALW 183
                 69*****998 PP

  == domain 3  score: 2.1 bits;  conditional E-value: 0.044
     Kelch_6  15 YifGGytds.....spylnkvwv 32 
                 ++fGG++d+     ++ l+++w+
  KOO21918.1 200 VVFGGAGDGdgqgnENLLSDLWC 222
                 69*****9999999999999997 PP

  == domain 4  score: 7.5 bits;  conditional E-value: 0.00087
     Kelch_6   2 raghsl.vsvggkiYifGGytdsspylnkvwvydpetksWe 41 
                 ra+hs  v++ +++ if+G++    ++  +  +d++t +W+
  KOO21918.1 325 RAHHSGgVVAESTLLIFSGQDETLITQHTLTALDLRTAVWT 365
                 5667777**************99888888999999999998 PP

  == domain 5  score: 1.8 bits;  conditional E-value: 0.055
     Kelch_6   8 vsvgg.kiYifGGytds..spylnkvwvyd 34 
                 ++++g  + +fGG +d+  + +  + w+++
  KOO21918.1 402 TAINGvGLIVFGGVGDDfgFVSATDAWLLR 431
                 56778889******9997755555556655 PP

>> Kelch_3  Galactose oxidase, central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.1       1.5     9e+03      38      48 ..     118     128 ..     114     129 .. 0.79
   2 ?   10.0   0.1   0.00014      0.83       4      47 ..     134     181 ..     132     182 .. 0.86
   3 ?    7.8   3.1   0.00067         4       4      44 ..     199     269 ..     198     273 .. 0.64
   4 ?    8.8   0.1   0.00033         2       3      28 ..     279     302 ..     277     332 .. 0.76
   5 ?   -0.0   0.1      0.19   1.2e+03       3      45 ..     337     384 ..     335     387 .. 0.59
   6 ?   -3.2   0.1       1.9   1.1e+04       4      12 ..     409     417 ..     409     430 .. 0.66

  Alignments for each domain:
  == domain 1  score: -2.8 bits;  conditional E-value: 1.5
     Kelch_3  38 ppaRaghaata 48 
                 pp  +g++++a
  KOO21918.1 118 PPRVSGASLCA 128
                 78888888887 PP

  == domain 2  score: 10.0 bits;  conditional E-value: 0.00014
     Kelch_3   4 lyifGGlgddgqdrlndvyvydldtn..tWaei..aslppaRaghaat 47 
                 l +fGG++ +++d l+++ ++++ ++   W+ +   + ppaR++h+a+
  KOO21918.1 134 LCLFGGRDSISGDTLGATRLVSVRSGvaVWDVLtsKTHPPARCYHTAA 181
                 789*****999999999999999888899995544788********97 PP

  == domain 3  score: 7.8 bits;  conditional E-value: 0.00067
     Kelch_3   4 lyifGGlgd....dgqdrlndvy..vydl.......dtn..............tWaei....aslppaRagh 44 
                 +++fGG+gd    ++++ l+d++   +++       +                +W+ +     ++p++R++h
  KOO21918.1 199 MVVFGGAGDgdgqGNENLLSDLWcaTVSVpvplsaaV-AggatgrpcvpqpplSWRPLeprsERSPSGRSSH 269
                 89********873335555****44444466664441.0345567777777777775554446667777777 PP

  == domain 4  score: 8.8 bits;  conditional E-value: 0.00033
     Kelch_3   3 rlyifGGlgddgqdrlndvyvydldt 28 
                  l+i+GGl   ++ +l+d++++  ++
  KOO21918.1 279 ALVIHGGLS--SGGVLGDTWLLTRGR 302
                 59*******..*********997654 PP

  == domain 5  score: -0.0 bits;  conditional E-value: 0.19
     Kelch_3   3 rlyifGGlgddgqdrl.ndvyvydldtntWaei......aslppaRagha 45 
                 +l+if G +   +  + +++ ++dl t  W+ +      +  ++ R+ ++
  KOO21918.1 337 TLLIFSGQD--ETLITqHTLTALDLRTAVWTVTllptegPHGWSTRRLAS 384
                 577777777..344443455578888887774445444444555777666 PP

  == domain 6  score: -3.2 bits;  conditional E-value: 1.9
     Kelch_3   4 lyifGGlgd 12 
                 l +fGG gd
  KOO21918.1 409 LIVFGGVGD 417
                 579999776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (445 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       224  (0.0124937); expected 358.6 (0.02)
Passed bias filter:                      168  (0.00937029); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.46u 0.27s 00:00:00.73 Elapsed: 00:00:00.43
# Mc/sec: 3072.82
//
Query:       KOO21919.1  [L=57]
Description: hypothetical protein Ctob_001844, partial [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (57 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       267  (0.0148921); expected 358.6 (0.02)
Passed bias filter:                      188  (0.0104858); expected 358.6 (0.02)
Passed Vit filter:                        10  (0.000557756); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.23s 00:00:00.57 Elapsed: 00:00:00.39
# Mc/sec: 433.24
//
Query:       KOO21920.1  [L=894]
Description: vacuolar proton [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
   6.3e-245  814.9   0.0   1.8e-244  813.4   0.0    1.7  1  V_ATPase_I   V-type ATPase 116kDa subunit family


Domain annotation for each model (and alignments):
>> V_ATPase_I  V-type ATPase 116kDa subunit family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  813.4   0.0  9.9e-249  1.8e-244       2     813 .]      28     884 ..      27     884 .. 0.90

  Alignments for each domain:
  == domain 1  score: 813.4 bits;  conditional E-value: 9.9e-249
  V_ATPase_I   2 eLGelglvqfrDlnedvnafqrkfvkevrrcdemerklrfleeeieklekavikeeeaeesleapeekeldeleeelekleeelkelnenleklkkeln 100
                 +LG+ gl+qfrDln  ++ ++r+fv+evrrcde++r +r ++ e e+ + ++  e    ++++++ + +ld++e +++++++el+el++++e l k+ n
  KOO21920.1  28 KLGTAGLIQFRDLNVGTSFYKRSFVEEVRRCDELSRIMRSIQLEFED-SAIELAE----KNSAESLRLSLDDIEPKIKSFNNELSELKKQQELLVKNDN 121
                 8********************************************99.4444443....3468888999****************************** PP

  V_ATPase_I 101 elvelkavlekakefleeeeeeeee.eeseeeeeekeeeeeeeseeeeeeelleeeeelsfvaGvikrekveaferilwralrgnlflrqaeieepled 198
                  l e+k vl   ++++++e+e   e ++   +  e  +++ +e ++ +e  +++++  ++ v+Gvik+e v+++er+l+ra+rgn+++++ +i ++l d
  KOO21920.1 122 ALREQKIVLDLGQKMYSKEAEVGMEkARPIGAVPEMGKTTMAELMTLSEF-AASSTGLFGQVSGVIKSELVASLERTLFRATRGNAVFETVPIAQKLFD 219
                 ****************9874443330222222222333333333333333.33344559*************************************999 PP

  V_ATPase_I 199 pet...gekveksvfiiffqgeqlkekikkicesfgaklyelpeseeereeklkeveeriedlekvleqteealkevleeiakeleewklkvkkekaiy 294
                  ++    e vek +f+++f ge l++ki+kic+ fga+ly +pe+++e+  +++ev++r+++ +++l + e  ++e+l +i + + +++ +v+kek+iy
  KOO21920.1 220 VDNrgqTEAVEKVFFMVLFAGEVLRDKISKICSYFGASLYMFPEDPSEYIAMVAEVQRRLAESDEILAKGEAVMSELLGRILTVFGTYHFVVQKEKMIY 318
                 86533368899**************************************************************************************** PP

  V_ATPase_I 295 htLnlfnldvtkkvliaegWvpkeeleeiqkalkeateessssvpsilneietketpPTyfrtnkfteafQeivdaYGiarYrEvNpalftiitFPFlF 393
                 ++Ln++++d +++v++aegWvp++e +++  ++  +t+e + ++ +iln+++++ tpPT++ + +ft++fQ++v++YG++rYrEvNp+ f++i FPFlF
  KOO21920.1 319 DMLNMCEFDLKRHVFVAEGWVPTREYDQLVATMAAVTKECHLDTRPILNKLNSRLTPPTHIPMTNFTSGFQALVNTYGTPRYREVNPGAFCCIFFPFLF 417
                 *************************************************************************************************** PP

  V_ATPase_I 394 avMFGDiGHGlllllfalllvlkekklkkk.kkdeilemlfsgRYiillmGlfsiYtGliYNdifskslnlfg.Sswevkeka.....veeeelk.... 481
                 ++MFGD+GHG+ll+lf+++lv kek++ +    ++++ m+++gRYiill G+f  Y+G++YN+ f+ ++n+fg S+w+  e+            +    
  KOO21920.1 418 GIMFGDFGHGTLLTLFGMFLVSKEKEWGTGaGLNDMVGMCYGGRYIILLNGIFGAYVGFLYNEAFAFPMNWFGgSRWHLAEDPsvgcaA-----Hpdpa 511
                 ***************************999899***************************************88*****7665555541.....24455 PP

  V_ATPase_I 482 ...kekkeekvYpfGlDpaWklaenellflnSlKmKlsvilGviqMlfgvllslvNalyfkkkldiilefiPqllfllsifgYlvlliiyKWlvdwe.a 576
                       + +++Yp+G+Dp+W+ + n+++f+nS+KmK+s+i+GviqM++g++lsl+N++   ++ +i++e +P+++f+  ifgYlv++i+yKW+vdw+ +
  KOO21920.1 512 alpPVCSMDSPYPVGIDPIWHYTANKITFFNSFKMKISIIVGVIQMTVGICLSLLNHIEYGDYKRIFFEYLPEMIFFEGIFGYLVFTIFYKWSVDWSgN 610
                 56688999****************************************************************************************854 PP

  V_ATPase_I 577 .......ekekapsllntlinmflskgkv.......................................................keeelye.gqetvqv 612
                        + + apsll+ linmf+s+++                                                        + +  ++  q  vq 
  KOO21920.1 611 vgvpgnpGPQAAPSLLTLLINMFMSPTTPisvplygiecytscstaqqhgacdvstiagacpiachtgvvdgedkltaagpgvnEFKMCFSdTQLNVQF 709
                 9*****97888*****************9***************************************************998655556663699**** PP

  V_ATPase_I 613 vLlllalvcvpvlllvkPlilklkhkkkkkkkekkkeeeeeeeeeeeeeeeeeeeeaeeeeeeeeeeeeeeeeeeeeeeeeeefdfgevfihqvIhtIE 711
                 +Ll++a+++vp+ll++ P+i   +h+ + ++k+k ++             +                ++e ++++++++ + +f+fg+ fihq+IhtIE
  KOO21920.1 710 ALLIAAFASVPFLLFPIPFIELAQHNANMAEKAKYEQ------------LD----------------SKEGKDQDDADDGHGDFSFGDAFIHQAIHTIE 780
                 *************************997766643211............11................1112223345677899**************** PP

  V_ATPase_I 712 fvLgciSnTASYLRLWALSLAHaqLseVlwemvlkkallksk..svlgvillvilfavfavltvavLllmeglsafLHaLRLhWVEfqsKFykgdGykF 808
                 fvLg+iSnTASYLRLWALSLAH+qL+e + +m+l+ a+l+s+    ++ ++ +++++++a+++v+vL++me ls+fLHaLRL+WVEfq+KF++gdG+k+
  KOO21920.1 781 FVLGSISNTASYLRLWALSLAHSQLAELFKDMILRDAGLNSGlpAPFSGMAAWFALTAWAIISVVVLMVMENLSSFLHALRLQWVEFQNKFFRGDGHKY 879
                 ************************************997765225667899999999****************************************** PP

  V_ATPase_I 809 epfsf 813
                 +pf+f
  KOO21920.1 880 SPFTF 884
                 ***98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (894 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       741  (0.0413297); expected 358.6 (0.02)
Passed bias filter:                      508  (0.028334); expected 358.6 (0.02)
Passed Vit filter:                        57  (0.00317921); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.79u 0.31s 00:00:01.10 Elapsed: 00:00:00.54
# Mc/sec: 5005.42
//
Query:       KOO21921.1  [L=318]
Description: hypothetical protein Ctob_001847 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.4e-12   47.6   0.1    3.5e-11   43.8   0.1    2.1  1  PhyH      Phytanoyl-CoA dioxygenase (PhyH)
  ------ inclusion threshold ------
        0.1   11.3   0.0        3.4    6.3   0.0    2.5  2  DUF1479   Protein of unknown function (DUF1479)


Domain annotation for each model (and alignments):
>> PhyH  Phytanoyl-CoA dioxygenase (PhyH)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.8   0.1   3.9e-15   3.5e-11       1     211 []      14     237 ..      14     237 .. 0.72

  Alignments for each domain:
  == domain 1  score: 43.8 bits;  conditional E-value: 3.9e-15
                 HHHHSEEEETTSS-HHHHHHHHHHHHHHHHHCHTTCCSEEEEECEEESTTCCCEECCCHHCHHHHTTHHHHHHHHHHHHTSCEEEE...........EE CS
        PhyH   1 feedGylviegflsaeevealraeiealldralesgdkidfffeekaaadedglleksinkvghflhprkvadlvrailgqdvyva...........av 88 
                 f+ +G+lv+++++s+eev++ +a+i+a++ +  ++  +   +++e++  +++g+   +      +  p   +dl+r++l  +++v            + 
  KOO21921.1  14 FDLNGFLVVRSVFSPEEVATANAGIDAHTAELQARVGDALRNANEGTPLSAKGPR-LDLGGMLFWDQP--HCDLFRNVLAHPKLVPylnafcgegyrMD 109
                 789************************9555555555556666666666666666.566666666666..88888888888888778886654322223 PP

                 EEEEEEE.EEE-TTTCB-EEEEE-SGGGST.......EES...........GCCEEEEEEESS-B-TTBT-EEEETTGGGS-CCGTCCHHCSGCCTTSC CS
        PhyH  89 lqsmyqd.ifkqpkiGgevqpwHqDstflp.......tdp...........eesvvgvwialedateenGclrfiPGSHkweegplrrrlpeddteaed 168
                 +     + i+ +++   e+  +H      +       ++p             ++++v++ l d +   G+ +++ GSHk  + p   ++ +   e + 
  KOO21921.1 110 H-----QpIVIAQDRDSEGFMLHGGPISGDdgvpsgrFNPelqyrcegghiWTTLLAVAVQLVDHNLGDGGFCVLRGSHKL-NLPVPLDVVNGVSEVF- 201
                 3.....255555555566667887777777777779955555555654444445556************************.5556666666655555. PP

                 CCTTTGHGSCEEEE.BTTTEEEEEETTSEEEE-TB.SSSXEEE CS
        PhyH 169 deakkedeeeavpvevkaGdavlfhgrllHgsgaNrsdksRra 211
                        e+ ++pv  kaGd+v+++ +++Hg+ + r ++ Rr+
  KOO21921.1 202 ------REHIHQPV-TKAGDVVIWSEATVHGATPWRGEQQRRI 237
                 ......34444554.79**********************9985 PP

>> DUF1479  Protein of unknown function (DUF1479)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.1   0.0    0.0073        65      71     101 ..      14      44 ..       3      84 .. 0.80
   2 ?    6.3   0.0   0.00038       3.4     318     354 ..     204     240 ..     198     249 .. 0.85

  Alignments for each domain:
  == domain 1  score: 2.1 bits;  conditional E-value: 0.0073
                 HHHHTEEEEETSS-HHHHHHHHHHHHHHHHH CS
     DUF1479  71 ikrrGvlvvrgvvpeeeaeewkeeikeYlek 101
                 +   G lvvr v++ ee+ ++++ i+++ ++
  KOO21921.1  14 FDLNGFLVVRSVFSPEEVATANAGIDAHTAE 44 
                 5567999999999999999999888877665 PP

  == domain 2  score: 6.3 bits;  conditional E-value: 0.00038
                 -EE---B-TT-EEEEETT--EEE-SBCSSSS-EEEEE CS
     DUF1479 318 lvsiPdleaGDyvvWhcdlihavdkehegkkdssvlY 354
                  ++ P  +aGD+v+W   ++h  ++   +++ +  lY
  KOO21921.1 204 HIHQPVTKAGDVVIWSEATVHGATPWRGEQQRRIALY 240
                 67899****************9999888887777777 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (318 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       315  (0.0175693); expected 358.6 (0.02)
Passed bias filter:                      302  (0.0168442); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.46u 0.28s 00:00:00.74 Elapsed: 00:00:00.44
# Mc/sec: 2188.28
//
Query:       KOO21922.1  [L=300]
Description: hypothetical protein Ctob_001846 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (300 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       314  (0.0175135); expected 358.6 (0.02)
Passed bias filter:                      254  (0.014167); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.43u 0.25s 00:00:00.68 Elapsed: 00:00:00.41
# Mc/sec: 2190.34
//
Query:       KOO21923.1  [L=423]
Description: protein phosphatase 2c 60 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    7.3e-72  242.1   0.1    5.1e-59  200.0   0.1    2.2  2  PP2C      Protein phosphatase 2C
    7.5e-05   22.5   1.0     0.0026   17.4   0.1    2.3  2  PP2C_2    Protein phosphatase 2C


Domain annotation for each model (and alignments):
>> PP2C  Protein phosphatase 2C
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.0   0.0   3.7e-14   3.3e-10       3      94 ..      25     106 ..      23     131 .. 0.84
   2 !  200.0   0.1   5.7e-63   5.1e-59      97     252 ..     235     390 ..     220     395 .. 0.95

  Alignments for each domain:
  == domain 1  score: 40.0 bits;  conditional E-value: 3.7e-14
                 EEEEEECCCCSSHHEEEECCCCTCTTCCCCCCEEEEEEEEESSSHHHHHHHHHHHHHHHHHHHCHTTHHHHHHHHHHHHHHHHHHHHHHHHH CS
        PP2C   3 lgaselqgarksmedahislanlesssgkssvsffavfdghggseaakyarehleeilksqksfeelekleqalrksfladtdeelksskan 94 
                 +g s++qg+r+s edahi+++        +   +f+vfdghgg+e++ +a+ h  ++l+sq++f+++  l + l+ sf + +de+l++ k+n
  KOO21923.1  25 YGCSSMQGWRRSQEDAHIACD------LPDGTTVFGVFDGHGGREVSAFAKRHFGKVLASQPQFSSD--LPASLIGSFHR-IDEMLED-KDN 106
                 7889**************999......67999***********************************..99*********.9999998.333 PP

  == domain 2  score: 200.0 bits;  conditional E-value: 5.7e-63
                 CCT-EEEEEEEEEETTEEEEEEESS-EEEEEETTEEEEECS---STTSHHHHHHHHHTT--EEECCEEETTTBSBSB-EE-GGGTCCCC...CCSTSB- CS
        PP2C  97 psksGstavvalirgtklyvAnvGDSravLcrkgnakkeltedHkpsdedEreRIeeaggsvsngegrvngsLavsRalGDlelkpket...eeqlvsa 192
                 +++ G+t+vva +rg +l+vAn+GDSra+L+r+g+a+  l++dHkp++++E +RI++agg+v   +grvng+L++sRalGDl++k ++    +eq+++a
  KOO21923.1 235 HIDAGATSVVAAVRGRTLFVANAGDSRAILSRRGKAI-PLSTDHKPALSSELARITSAGGFVT-AQGRVNGNLNLSRALGDLKYKVDKArgrHEQIITA 331
                 6899*********************************.*************************.7********************97779********* PP

                 --EEEEEEE-TTEEEEEEE-HHHHTTSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHC CS
        PP2C 193 ePdvtsvklteedefliLacdGlwdvlsdqeavdlvrdelekkkspeevaeelvdeaiar 252
                 +Pdvt++++++ def++LacdG+wd++++q++vd+vr+++ + + + e++e+++d++ia 
  KOO21923.1 332 HPDVTTHTIEKGDEFMVLACDGVWDCMTNQQVVDFVRERIRS-TPLPEICEQILDHCIAD 390
                 *****************************************8.5899***********85 PP

>> PP2C_2  Protein phosphatase 2C
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    3.7   0.1    0.0045        40      12      42 ..      37      68 ..      28      90 .. 0.86
   2 !   17.4   0.1   2.9e-07    0.0026      93     196 ..     236     374 ..     133     389 .. 0.78

  Alignments for each domain:
  == domain 1  score: 3.7 bits;  conditional E-value: 0.0045
      PP2C_2 12 cqDalavwtdsggsll.aVaDGaGSakrSerG 42
                 +Da+ +++  +g  +  V DG+G ++ S ++
  KOO21923.1 37 QEDAHIACDLPDGTTVfGVFDGHGGREVSAFA 68
                689999*******99967******99988765 PP

  == domain 2  score: 17.4 bits;  conditional E-value: 2.9e-07
      PP2C_2  93 kdyatTllaavvtpdeivalqiGDGaivvrdrdgevqllgepdsgeyanqttfltsedaeeel.................................... 155
                  d ++T ++a+v+++++++++ GD+ ++  +r g+  +l+++++   +++ + +ts                                           
  KOO21923.1 236 IDAGATSVVAAVRGRTLFVANAGDSRAI-LSRRGKAIPLSTDHKPALSSELARITSAGGF--Vtaqgrvngnlnlsralgdlkykvdkargrheqiita 331
                 4789999999*****************6.699************************9433..34477889999************************** PP

      PP2C_2 156 ..rirrlkledgdal.llmTDGlanslrdeerfaelleellrvl 196
                    +++ + e+gd++ +l+ DG+ + + +++++ ++++e++r+ 
  KOO21923.1 332 hpDVTTHTIEKGDEFmVLACDGVWDCM-TNQQVVDFVRERIRST 374
                 99888888777766537899***8766.5888889999988765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (423 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       590  (0.0329076); expected 358.6 (0.02)
Passed bias filter:                      407  (0.0227007); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.50u 0.23s 00:00:00.73 Elapsed: 00:00:00.40
# Mc/sec: 3212.09
//
Query:       KOO21924.1  [L=339]
Description: ribosome biogenesis gtp-binding protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    8.3e-17   61.3   0.0    1.5e-16   60.5   0.0    1.4  1  MMR_HSR1     50S ribosome-binding GTPase
     0.0033   17.0   0.0     0.0069   15.9   0.0    1.5  1  FeoB_N       Ferrous iron transport protein B
     0.0049   16.8   0.0      0.016   15.1   0.0    1.8  2  RsgA_GTPase  RsgA GTPase
  ------ inclusion threshold ------
      0.014   15.5   0.0      0.044   13.8   0.1    1.8  2  Dynamin_N    Dynamin family
      0.016   14.6   0.0      0.026   13.9   0.0    1.3  1  AIG1         AIG1 family
      0.092   13.0   0.0       0.16   12.2   0.0    1.4  1  Roc          Ras of Complex, Roc, domain of DAPkinase


Domain annotation for each model (and alignments):
>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.5   0.0   4.9e-20   1.5e-16       1      99 [.     112     225 ..     112     243 .. 0.71

  Alignments for each domain:
  == domain 1  score: 60.5 bits;  conditional E-value: 4.9e-20
                 EEEEEESTTSSHHHHHHHHHTS..TEEESSSTTSSSSEEEEEEE.....ETTEE.....EEEEECGGC....SS.HHHHHH.HHHHHHHHHHC.TSEEE CS
    MMR_HSR1   1 evaivGrpNvGKStLinaltge..kaivsdkpgtTrdinegrvk.....lkgke.....ielvDtpGl....ie.gaseek.glgkaflalee.adlil 80 
                 eva++Gr+NvGKS+L+n  +g+   a +s++pg+T++ n++ ++         +     +++vD+pGl    +   +++++  +  +++a +    l++
  KOO21924.1 112 EVAFIGRSNVGKSSLVNMVLGRraIAYTSKTPGKTQQYNYFILNepaagQ---RaavgtFHVVDMPGLgyakVPgAERRKWlTFLGQYAAARPqLRLLV 207
                 69*******************9445688**************99554441...144444********6544323244555586677777766558**** PP

                 EEEETTTTCSHHHHHHHHH CS
    MMR_HSR1  81 lvvdaseeklkpldeelee 99 
                 ++vd  + +  ++d  + +
  KOO21924.1 208 HLVD-GQVGPMEVDLAIMR 225
                 ****.42333344444433 PP

>> FeoB_N  Ferrous iron transport protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.0   2.3e-06    0.0069       2      57 ..     112     176 ..     111     190 .. 0.77

  Alignments for each domain:
  == domain 1  score: 15.9 bits;  conditional E-value: 2.3e-06
                 EEEEEESTTSSHHHHHHHHHTTS..EEEEESTTSSSEEEEEEEEE.......TTEEEEEEE---- CS
      FeoB_N   2 tvalvGnpnvGkttlfnaltgak..qkvgNwpGvtvekkegklkl.......kgkeveivDlPGi 57 
                 +va++G  nvGk++l+n + g +   + +  pG+t + +   l+        +  ++++vD+PG 
  KOO21924.1 112 EVAFIGRSNVGKSSLVNMVLGRRaiAYTSKTPGKTQQYNYFILNEpaagqraAVGTFHVVDMPGL 176
                 589*****************988445789999999877666555444333223467899999996 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.0   5.3e-06     0.016     102     125 ..     113     136 ..     101     149 .. 0.83
   2 ?   -2.2   0.0       1.1   3.3e+03      51      63 ..     280     292 ..     277     334 .. 0.46

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 5.3e-06
                  EEEECSTTSSHHHHHHHHCTT--- CS
  RsgA_GTPase 102 svlvGqSGvGKStLinallpelel 125
                  ++++G S vGKS+L+n++l++  +
   KOO21924.1 113 VAFIGRSNVGKSSLVNMVLGRRAI 136
                  689**************9997543 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 1.1
                  EEEE-GGG--HHH CS
  RsgA_GTPase  51 ivlnKiDlleeee 63 
                  ivl+K+D    + 
   KOO21924.1 280 IVLTKADKGGLMA 292
                  6777777544333 PP

>> Dynamin_N  Dynamin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.1   1.5e-05     0.044       1      24 [.     113     136 ..     113     147 .. 0.86
   2 ?   -1.7   0.0      0.89   2.6e+03     102     111 ..     167     176 ..     161     188 .. 0.82

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 1.5e-05
                 EEEEEBTTTTHHHHHHHHHTS--S CS
   Dynamin_N   1 iavvGsqSsGKSSvlnaLlgedil 24 
                 +a++G  + GKSS++n +lg++  
  KOO21924.1 113 VAFIGRSNVGKSSLVNMVLGRRAI 136
                 799*****************9854 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 0.89
                 SEEEEE---B CS
   Dynamin_N 102 gltlvDlPGl 111
                 +  +vD+PGl
  KOO21924.1 167 TFHVVDMPGL 176
                 5678*****8 PP

>> AIG1  AIG1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.0   8.7e-06     0.026       5      60 ..     115     177 ..     112     215 .. 0.68

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 8.7e-06
                 EESSTTSSHHHHHHHHHTS--..SS--TTTS-......--SS-EEEEEEETTEEEEEEE--SCC CS
        AIG1   5 lvGktgnGkSaTgNsilgkka..Fesklsaqs......vtkkcqkksrtwdgkkinViDTPglf 60 
                  +G++ +GkS+ +N +lg++a  ++sk+  ++      + +++   +r+    + +V+D Pgl 
  KOO21924.1 115 FIGRSNVGKSSLVNMVLGRRAiaYTSKTPGKTqqynyfILNEPAAGQRAAV-GTFHVVDMPGLG 177
                 69******************9666666533321111112333333333222.356788888875 PP

>> Roc  Ras of Complex, Roc, domain of DAPkinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   5.4e-05      0.16       2      37 ..     113     148 ..     112     177 .. 0.74

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 5.4e-05
                 EEEESSTTSSHHHHHHCHCT-CCC-EEETTTTEEEE CS
         Roc   2 vvlvGdsgvGKtsllkrfvedkfsekekstigvdfl 37 
                 v ++G s+vGK+sl++ ++ ++    +++t g +  
  KOO21924.1 113 VAFIGRSNVGKSSLVNMVLGRRAIAYTSKTPGKTQQ 148
                 679**************9999988888888776544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (339 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       448  (0.0249875); expected 358.6 (0.02)
Passed bias filter:                      363  (0.0202465); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.44u 0.21s 00:00:00.65 Elapsed: 00:00:00.37
# Mc/sec: 2726.52
//
Query:       KOO21925.1  [L=159]
Description: putative transporter [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
     0.0018   17.3  10.0     0.0039   16.2  10.1    1.4  1  MFS_1            Major Facilitator Superfamily
      0.006   15.9   5.3     0.0075   15.6   5.3    1.1  1  MFS_4            Uncharacterised MFS-type transporter YbfB
  ------ inclusion threshold ------
       0.02   13.7   4.3      0.024   13.5   4.3    1.0  1  EcsB             Bacterial ABC transporter protein EcsB
        1.2    9.2   8.6       0.81    9.8   1.0    2.1  2  Phage_holin_3_6  Putative Actinobacterial Holin-X, holin supe


Domain annotation for each model (and alignments):
>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2  10.1   8.8e-07    0.0039      60     168 ..      19     121 ..       1     141 [. 0.77

  Alignments for each domain:
  == domain 1  score: 16.2 bits;  conditional E-value: 8.8e-07
       MFS_1  60 GrrrvlllglllfalglllllfasslwlllvlrvlqGlgagalfpagaaliadwfpkeergraigllsagfslGailgpllggllasslgWravfyila 158
                  +r+ l   +l+ +++l+l+lf+++l + lv+ +l  ++ g+++pa++++ ++++p+e r+  + ++ +         +++ g+l+ + +   +f+ + 
  KOO21925.1  19 RPRSSLSYVFLVASIALALPLFTTGLEATLVSFLLFEACVGIYWPAMGTVRSQVVPEETRATIYNIFRVPL------NAIVLGVLLNQMSTLTAFMCCS 111
                 46666666667777776677787888899*********************************999999943......3455566666888999999999 PP

       MFS_1 159 ivsllafvlf 168
                 +++l+afv+ 
  KOO21925.1 112 GMLLIAFVCQ 121
                 9999999974 PP

>> MFS_4  Uncharacterised MFS-type transporter YbfB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   5.3   1.7e-06    0.0075     241     359 ..       6     118 ..       2     122 .. 0.86

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 1.7e-06
       MFS_4 241 vgvlvwlrvakrsglrralaaallieavgvllsllspsplglivssvllGltflaitalvlqlarelappatrrllglmTasfgigQi.lGpllaslla 338
                 +++ vw  + ++ + r  l  ++l+ +++++l+l  +++ + +vs +l+ +  ++i   ++ ++r ++ p++ r+     +++ i+ + l +++ ++l 
  KOO21925.1   6 TACIVWAPLPSSARPRSSLSYVFLVASIALALPLFTTGLEATLVSFLLFEA-CVGIYWPAMGTVRSQVVPEETRA-----TIYNIFRVpLNAIVLGVLL 98 
                 67899******************************************9965.6899999******9999888775.....579999986899******* PP

       MFS_4 339 eatgslalallvaaaalvlaa 359
                 ++ ++l++ + + +++l++a 
  KOO21925.1  99 NQMSTLTAFM-CCSGMLLIAF 118
                 ***9998655.5556666665 PP

>> EcsB  Bacterial ABC transporter protein EcsB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   4.3   5.4e-06     0.024     107     201 ..      26     121 ..      16     131 .. 0.71

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 5.4e-06
        EcsB 107 llllllvllillPlllettglsiaelllllllllllkl.lnlllkweelrlqgkkkrridrlirlllnalllylllalapllallli...lllllvlll 201
                  ++l+  ++++lPl+++  +    +l+++ll+ +++ + +     ++++ + ++++  i+ ++r+ lna++l +ll++ ++l +++    +ll+++++ 
  KOO21925.1  26 YVFLVASIALALPLFTTGLEA---TLVSFLLFEACVGIyWPAMGTVRSQVVPEETRATIYNIFRVPLNAIVLGVLLNQMSTLTAFMCcsgMLLIAFVCQ 121
                 345555556666776644444...4455555555555559999999999999*99***********************999999888655444444433 PP

>> Phage_holin_3_6  Putative Actinobacterial Holin-X, holin superfamily III
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   1.0   0.00018      0.81      50     105 ..      25      81 ..      23      87 .. 0.83
   2 ?    3.7   1.5     0.014        62      57      96 ..      93     133 ..      84     137 .. 0.75

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.00018
  Phage_holin_3_6  50 alllllvalalala.a.lwlaalivaavllvlagvlalvglkklkkakplpertieel 105
                      + ++l++ +alal  +   l a++v  +l+ + +   + ++ +++++  +pe+t++++
       KOO21925.1  25 SYVFLVASIALALPlFtTGLEATLVSFLLFEACVGIYWPAMGTVRSQ-VVPEETRATI 81 
                      56778888888887679999999999999999999999999999994.47****9986 PP

  == domain 2  score: 3.7 bits;  conditional E-value: 0.014
  Phage_holin_3_6  57 alalala.alwlaalivaavllvlagvlalvglkklkkakp 96 
                       l ++l+ ++ l a++ +  +l++a v+  v  +++++++p
       KOO21925.1  93 VLGVLLNqMSTLTAFMCCSGMLLIAFVCQSVLTARMAQVRP 133
                      23344443488899999999999999999999999999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (159 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       682  (0.0380389); expected 358.6 (0.02)
Passed bias filter:                      363  (0.0202465); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.43u 0.23s 00:00:00.66 Elapsed: 00:00:00.41
# Mc/sec: 1153.55
//
Query:       KOO21926.1  [L=557]
Description: hypothetical protein Ctob_001848 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.3e-09   37.2   0.3    1.8e-08   34.3   0.1    2.5  2  DnaJ      DnaJ domain


Domain annotation for each model (and alignments):
>> DnaJ  DnaJ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.0     0.091   1.6e+03      42      59 ..     167     184 ..     159     187 .. 0.82
   2 !   34.3   0.1     1e-12   1.8e-08       3      53 ..     496     553 ..     494     557 .] 0.85

  Alignments for each domain:
  == domain 1  score: -0.7 bits;  conditional E-value: 0.091
                 HHHHHHHHHHHHTSHHHH CS
        DnaJ  42 kFkeineAyevLsdpekR 59 
                 +   ++eA  +L d+++R
  KOO21926.1 167 ELDALQEAEATLLDDTRR 184
                 56789*********9998 PP

  == domain 2  score: 34.3 bits;  conditional E-value: 1e-12
                 HHHHTSSTTG-........HHHHHHHHHHHHHHHSTTTSCCHHHHHHHHHHHHHHHHHH CS
        DnaJ   3 YeiLgvskdas........edeIkkaYrklalkyHPDknpkdpeaeekFkeineAyevL 53 
                 ++ Lgv+k a         + e+ k+Yrklal++HPDk+ +++ a+e+   +n+A+ vL
  KOO21926.1 496 FSALGVPKLAAarelntvnKREVLKKYRKLALQLHPDKC-EHQYAQEAMVALNKAFAVL 553
                 6778888886555666666889*****************.9999*************99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (557 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1825  (0.10179); expected 358.6 (0.02)
Passed bias filter:                      399  (0.0222544); expected 358.6 (0.02)
Passed Vit filter:                        70  (0.00390429); expected 17.9 (0.001)
Passed Fwd filter:                        21  (0.00117129); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.91u 0.32s 00:00:01.23 Elapsed: 00:00:00.46
# Mc/sec: 3628.01
//
Query:       KOO21927.1  [L=94]
Description: hypothetical protein Ctob_001853 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.2e-05   23.2   0.0    5.4e-05   22.8   0.0    1.2  1  Cupin_2   Cupin domain
     0.0015   18.1   0.0      0.002   17.8   0.0    1.1  1  Cupin_1   Cupin
     0.0058   16.3   0.0     0.0075   15.9   0.0    1.3  1  Cupin_3   Protein of unknown function (DUF861)
  ------ inclusion threshold ------
      0.019   15.2   0.0      0.026   14.7   0.0    1.3  1  ARD       ARD/ARD' family
       0.12   12.0   0.0       0.12   12.0   0.0    1.1  1  Cupin_6   Cupin


Domain annotation for each model (and alignments):
>> Cupin_2  Cupin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.8   0.0   1.5e-08   5.4e-05      27      60 ..       4      41 ..       1      50 [. 0.75

  Alignments for each domain:
  == domain 1  score: 22.8 bits;  conditional E-value: 1.5e-08
                ESEEEEE.EC.TE..EEEEETTEEEEE-TT-EEEEEE- CS
     Cupin_2 27 eGegelt.vd.ge..eveleaGdsvyfpagtpHrfrNt 60
                eG +++t  + g+  e e++aGd+v++pa+tpH f+  
  KOO21927.1  4 EGLVRVTtREnGRdvEREYGAGDLVIVPANTPHIFKAV 41
                6777777322344669*****************99765 PP

>> Cupin_1  Cupin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.8   0.0   5.5e-07     0.002      65     104 ..       5      43 ..       2      51 .. 0.81

  Alignments for each domain:
  == domain 1  score: 17.8 bits;  conditional E-value: 5.5e-07
                 EEEEEEETTSS.EEEEEEEETTEEEEE-TT-EEEEEEESS CS
     Cupin_1  65 grvgfvvpgngnrdfhkklreGdvfvvPaglvhfqynsgd 104
                 g+v +++ +n  rd ++++ +Gd+++vPa+ +h +++ + 
  KOO21927.1   5 GLVRVTTREN-GRDVEREYGAGDLVIVPANTPHIFKAVNR 43 
                 5656666666.49************************964 PP

>> Cupin_3  Protein of unknown function (DUF861)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.0   2.1e-06    0.0075      31      60 ..       2      34 ..       1      52 [. 0.82

  Alignments for each domain:
  == domain 1  score: 15.9 bits;  conditional E-value: 2.1e-06
                EEECEEEEEET.TTEE..EEEETTEEEEE-TTE CS
     Cupin_3 31 ileGevkvtpe.gget..velraGDlvvlpkgl 60
                i eG v+vt   +g +  +e++aGDlv +p+++
  KOO21927.1  2 IFEGLVRVTTReNGRDveREYGAGDLVIVPANT 34
                7899****99856666889***********998 PP

>> ARD  ARD/ARD' family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.7   0.0   7.1e-06     0.026     121     137 ..      24      40 ..       9      47 .. 0.87

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 7.1e-06
         ARD 121 kGDLivlPagiyhrFtl 137
                 +GDL+++Pa++ h F +
  KOO21927.1  24 AGDLVIVPANTPHIFKA 40 
                 7**************76 PP

>> Cupin_6  Cupin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   3.4e-05      0.12      39      78 ..       2      43 ..       1      79 [. 0.75

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 3.4e-05
     Cupin_6 39 vlrGscwlidpasg..epvrLsagdvvllpggephvladspg 78
                +++G ++++  ++g    ++ +agd+v++p  +ph++    +
  KOO21927.1  2 IFEGLVRVTTRENGrdVEREYGAGDLVIVPANTPHIFKAVNR 43
                6777777774443334568999**************965555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (94 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       300  (0.0167327); expected 358.6 (0.02)
Passed bias filter:                      270  (0.0150594); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.37u 0.27s 00:00:00.64 Elapsed: 00:00:00.43
# Mc/sec: 657.86
//
Query:       KOO21928.1  [L=269]
Description: hypothetical protein Ctob_001850 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (269 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       261  (0.0145574); expected 358.6 (0.02)
Passed bias filter:                      253  (0.0141112); expected 358.6 (0.02)
Passed Vit filter:                         9  (0.00050198); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.44u 0.23s 00:00:00.67 Elapsed: 00:00:00.41
# Mc/sec: 1975.29
//
Query:       KOO21929.1  [L=50]
Description: hypothetical protein Ctob_001839 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (50 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       373  (0.0208043); expected 358.6 (0.02)
Passed bias filter:                      182  (0.0101512); expected 358.6 (0.02)
Passed Vit filter:                         6  (0.000334653); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.26s 00:00:00.58 Elapsed: 00:00:00.39
# Mc/sec: 387.62
//
Query:       KOO21930.1  [L=498]
Description: hypothetical protein Ctob_006185 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (498 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       238  (0.0132746); expected 358.6 (0.02)
Passed bias filter:                      209  (0.0116571); expected 358.6 (0.02)
Passed Vit filter:                        11  (0.000613531); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.50u 0.25s 00:00:00.75 Elapsed: 00:00:00.43
# Mc/sec: 3494.35
//
Query:       KOO21931.1  [L=397]
Description: branched-chain amino acid aminotransferase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    3.2e-30  105.7   0.0    4.1e-30  105.3   0.0    1.1  1  Aminotran_4  Amino-transferase class IV


Domain annotation for each model (and alignments):
>> Aminotran_4  Amino-transferase class IV
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  105.3   0.0   2.3e-34   4.1e-30       2     223 .]     116     355 ..     115     355 .. 0.93

  Alignments for each domain:
  == domain 1  score: 105.3 bits;  conditional E-value: 2.3e-34
  Aminotran_4   2 lfEtmrvy...ngei..ffldeHleRLrksaellglelpfdeeelrkileelleannsen........grlrllvsrgggglgaatsepsvavyvsal 86 
                  lfE+ ++    +g+i  ++lde+ +R++ +a++l  + p++++ ++k+++ +++an +++         ++r+++ + g  lg  +++p++  +v+  
   KOO21931.1 116 LFEGCKAFrcaDGRIrvCNLDENSARMNTGAARL-VMAPVPKKMFNKAIDWAVRANAEFVppygsggsMYIRPFLMGSGPILG-LQPCPEFTFMVAVT 211
                  8999997778899998788************888.8*****************************98888*****77776666.99999999999999 PP

  Aminotran_4  87 ppgpeseke....lplvtssdvrrdapsplpgaKtln.yldnvlarreakergadevllvdedgn..vtEgstsNv.fivkggelitPplssgiLpGi 176
                  p g++  k     +++v+ +d  r ap+ + g+K    y+  +l  + ak+ g+  +l++d + n  v E+s sN+  i+k+ge +tP   s iLp+i
   KOO21931.1 212 PVGNYFGKGvqsgVHAVICQDFDRAAPRGTGGVKAGGnYAADLLPLKLAKAGGFGTTLYLDAKENqyVEEFSVSNFlGITKNGEYVTPHSPS-ILPSI 308
                  99999999999***********************9877***********************888888*********************7656.***** PP

  Aminotran_4 177 trrallelakalgleveereitlkdleeadeafltntlrgvlpvrsi 223
                  t ++l++lak++gl+v+ r+++ ++++ +de+  ++t+  v p+ si
   KOO21931.1 309 TNKMLMQLAKDKGLTVQPRPVSWEEVKTMDEVGACGTATVVAPIASI 355
                  ********************************************998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (397 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       349  (0.0194657); expected 358.6 (0.02)
Passed bias filter:                      337  (0.0187964); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.26s 00:00:00.70 Elapsed: 00:00:00.41
# Mc/sec: 2909.10
//
Query:       KOO21932.1  [L=289]
Description: hypothetical protein Ctob_006186 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.7e-22   79.5   0.0    4.7e-22   78.7   0.0    1.2  1  Bestrophin  Bestrophin, RFP-TM, chloride channel


Domain annotation for each model (and alignments):
>> Bestrophin  Bestrophin, RFP-TM, chloride channel
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   78.7   0.0   2.6e-26   4.7e-22      50     279 ..      22     256 ..       5     263 .. 0.74

  Alignments for each domain:
  == domain 1  score: 78.7 bits;  conditional E-value: 2.6e-26
  Bestrophin  50 fellsicelipLsfvLgFrvnavydRWweqrkllgwldkaarslarqvrgls.....deegrlarrtilrylvlllvlffralssrvrkrfptlehlle 143
                 fel+s     +L+++L+Fr+ ++ dR+ ++ +++ ++ + +rs+ r++  +s     ++ +rla  +++     +++l    + s +r++  +   + e
  KOO21932.1  22 FELTSP----VLGLLLVFRTDTANDRFTNGCEAVWQITSSLRSIIRKLVVWSgrdkfSDAERLAALELI---DACVLLHGWIMGSYLRGKPLK--AVQE 111
                 999999....****************************************9865322133333333333...333333333344555554332..3334 PP

  Bestrophin 144 agllteeeakile..........nkywvplqWavsllrrlaerlkelakegrikddqalkeleeelnelraklgsleridwtpiPlvYtqvvtravyly 232
                 a+ll  ++  + e          +++++ ++   ++       +   ++  +i++ q+  ++++e+++++a+lg++e++  +piPl Yt+   r+++l+
  KOO21932.1 112 AQLLRFAAG-RAEnvpsdgskvaTTPYLAIT---AI------SIGVSRRLTSISEGQE-VNIDDEFSKVTAALGKCENLLRVPIPLGYTRYSVRFLWLW 199
                 443333333.222355655422222222222...22......2444557888888775.59************************************** PP

  Bestrophin 233 fllallgrqfldseidlylPvftllq..........................faffffGllkvaeqlenPFGe 279
                 + l               lP f+l+                           ++f+f+ ++ +a q+e+PF+ 
  KOO21932.1 200 LSL---------------LP-FALAStfadvsaastnlfdkpqiglaaammfVSFIFLSIEDIAVQIEEPFAI 256
                 ***...............**.*******************************9******************86 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (289 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       304  (0.0169558); expected 358.6 (0.02)
Passed bias filter:                      243  (0.0135535); expected 358.6 (0.02)
Passed Vit filter:                        11  (0.000613531); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.27s 00:00:00.70 Elapsed: 00:00:00.42
# Mc/sec: 2051.31
//
Query:       KOO21933.1  [L=206]
Description: hypothetical protein Ctob_006189 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
        0.1   12.8   3.5        0.5   10.6   1.0    2.9  2  CHASE8    Periplasmic sensor domain


Domain annotation for each model (and alignments):
>> CHASE8  Periplasmic sensor domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   1.0   2.8e-05       0.5      20      57 ..       7      45 ..       5     104 .. 0.79
   2 ?   -0.8   0.1       0.1   1.9e+03      53      76 ..     112     135 ..      95     154 .. 0.67

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 2.8e-05
      CHASE8 20 veAAlvFeDaaaAreiLaaLkaepeiaa.aavydaegkl 57
                ++AAl  +D++ A+++L+a+++e+++++ a++  +++  
  KOO21933.1  7 SSAALWAKDRVVAGQVLRAIASEGKMQReAEIQARREGA 45
                68*********************9997526666655555 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 0.1
      CHASE8  53 aegkllaeyaresseakeeleall 76 
                 a+++l +ey++ +++ + e+++ +
  KOO21933.1 112 ADEELVVEYQEFQHAIEAEAQSYT 135
                 456677777777766665555544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (206 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1583  (0.0882927); expected 358.6 (0.02)
Passed bias filter:                      583  (0.0325172); expected 358.6 (0.02)
Passed Vit filter:                        58  (0.00323498); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.27s 00:00:00.75 Elapsed: 00:00:00.43
# Mc/sec: 1425.07
//
Query:       KOO21934.1  [L=323]
Description: mynd finger family protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (323 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       410  (0.022868); expected 358.6 (0.02)
Passed bias filter:                      333  (0.0185733); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.42u 0.26s 00:00:00.68 Elapsed: 00:00:00.40
# Mc/sec: 2406.47
//
Query:       KOO21935.1  [L=430]
Description: phosphoglycerate kinase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   6.5e-145  482.8   0.8   7.6e-145  482.6   0.8    1.0  1  PGK       Phosphoglycerate kinase


Domain annotation for each model (and alignments):
>> PGK  Phosphoglycerate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  482.6   0.8  4.2e-149  7.6e-145       2     378 .]      10     419 ..       9     419 .. 0.94

  Alignments for each domain:
  == domain 1  score: 482.6 bits;  conditional E-value: 4.2e-149
                 GGS--TT-EEEEEE-----EECT..TEES--HHHHHHHHHHHHHHHTT-E.EEEEE--S--TT.S-GGG-SHHHHHHHHHHH.........TT..-EEE CS
         PGK   2 kdldlkgkrvlvRvDfNvplkke..gkitddtriraalpTikyllekgak.vvllsHlgrpkg.ekeklslkpvaerLsell.........gk..eVkf 85 
                  d+dlk+krv++RvDfNvp++k+    it++ ri+ alpTiky+l+kgak vvl+sHlgrp+g +++k+s++pva+ L+e++         gk  +V+f
  KOO21935.1  10 PDADLKDKRVFIRVDFNVPQDKKdpTIITNTARIDGALPTIKYCLDKGAKsVVLASHLGRPDGtAQAKYSMAPVAKVLQEIIkkhgwtdpsGKdtTVTF 108
                 599*****************999999************************9**********99777****************66666655511669*** PP

                 ESSTTSHHHHHHHHT-TTT-EEEES-GGGSTTTT...............TT-H..HHHHHHHHT-SEEEE--GGGTTS--TTTTHHHHCSEEEE-HHHH CS
         PGK  86 vedvvgeeveeaiaelkegevllLeNvrfykeEe...............knde..elakklasladvyVnDAFgtahrahaStvgiakvlsaaaGllme 167
                 v++++g++ve+a+a+ ++g+v+lLeNvrf  eEe               +  +  e++++la+ladvyVnDAFgtahrah+S+ g    ++ aaGll++
  KOO21935.1 109 VSNCYGPDVEAACADPAPGSVILLENVRFCVEEEgkgvdaagekikadkE--KvkEFRASLAKLADVYVNDAFGTAHRAHSSMLGEGYAIR-AAGLLVA 204
                 *********************************98888888887754433..1448*****************************998887.******* PP

                 HHHHHHHHHHHS--SSEEEEEEES-HHHCHHHHHHHTTT-SEEEEETCHHHHHHHH.TT-B-TTSS--GGGHHHHHHHHHHHHHHT-EEE--SEEEEES CS
         PGK 168 kElealskvlenperplvailGGakvsdkikvienLlekvdkliigGgmantFlka.qgleigkslveedklelakellekakkkgvkillpvDvvvak 265
                 kEl+a+ kvl+ p rp++ailGGakvsdki +i+n+l+kvdkliigGgma+tFlk+ +g+ ig+sl +e+ ++++ e++ekak+kgv+i+lp+D+vv++
  KOO21935.1 205 KELDAFGKVLDAPVRPVLAILGGAKVSDKILLIKNMLDKVDKLIIGGGMAYTFLKViDGMAIGSSLWDEEGAKIVPEIMEKAKAKGVEIILPIDFVVSS 303
                 ********************************************************9****************************************** PP

                 SS.STTS..EEEECCG--TT-EEEEE-HHHHHHHHHHHCC-SEEEEES-SS-TTSGCCCHHHHHHHHHHHHHCH.TSEEEEESHHHHHHHHHTT-GGGS CS
         PGK 266 ee.aeke.akvveveaipedemalDigpktielfaeaikeaktvvwnGpmGvfeiekfakGTkaiakalaeatk.galsivGGgdsaaaveklgladkv 361
                 +  ++ e ++++++e +p++ m+lD+gp+ti+l a+ai+++kt++wnGpmGvfe++kf++GTk++++++ e tk g+++++GGgd+a+++ k++ +dkv
  KOO21935.1 304 KFgEDGEvKNATKAEGVPDGFMGLDCGPETIKLNAAAIESSKTIIWNGPMGVFEMAKFETGTKSMMDTMVEVTKsGTITVIGGGDTATCCLKYNTEDKV 402
                 9544444478889999*******************************************************9999************************ PP

                 SEEESSSHHHHHHHCTS CS
         PGK 362 shvStGGgAsLelLegk 378
                 +hvStGGgAsLelLegk
  KOO21935.1 403 THVSTGGGASLELLEGK 419
                 ****************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (430 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       378  (0.0210832); expected 358.6 (0.02)
Passed bias filter:                      329  (0.0183502); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.52u 0.27s 00:00:00.79 Elapsed: 00:00:00.44
# Mc/sec: 2921.55
//
Query:       KOO21936.1  [L=160]
Description: vitamin k epoxide reductase complex subunit 1-like protein 1 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.7e-21   75.2   9.5    6.2e-21   74.9   9.5    1.1  1  VKOR      Vitamin K epoxide reductase family


Domain annotation for each model (and alignments):
>> VKOR  Vitamin K epoxide reductase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   74.9   9.5   3.5e-25   6.2e-21       5     123 ..      10     145 ..       8     146 .. 0.78

  Alignments for each domain:
  == domain 1  score: 74.9 bits;  conditional E-value: 3.5e-25
                 HHHHHHHHHHHHHHHHHH...HT---SS-SSSS...HHHHHCSTTSEETTEEHHHHHHH................HHHHHHHHHHS-.....HHHHHHH CS
        VKOR   5 vlalvGllvsiyltleklglktsssaalCdiss.vsCdkvlnSpyasilgvplsllGll................ayalvlllalapl....lwlllll 82 
                 vla +Gl++++y++ ++ ++ +++++alCdis+ +sC++v+ Spya+    pls +Gl+                 y++ +l a+++       +++l 
  KOO21936.1  10 VLAPLGLAIAGYALSVEAHMDEDGYEALCDISAkFSCTEVFRSPYAH----PLSHWGLVpkesdldlglaaagimLYSAYFLAACLWAiipfRKIIFLT 104
                 78999*************888999**********************5....344444444444444444433333666666555554466655566677 PP

                 HHHHHHHHHHHHHHHHHTTS----HHHHHHHHHHHHHHHHH CS
        VKOR  83 gslagvvfslyLiylslfvigalCpyClvsavlsllllvla 123
                 ++++g+ fs yL+y++ f +g++C++C++ +++++++l++a
  KOO21936.1 105 VATVGACFSCYLLYVLKFILGDFCIVCTGFHFVNFSMLAVA 145
                 777***********************************997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (160 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       689  (0.0384294); expected 358.6 (0.02)
Passed bias filter:                      363  (0.0202465); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.25s 00:00:00.62 Elapsed: 00:00:00.38
# Mc/sec: 1247.99
//
Query:       KOO21937.1  [L=524]
Description: anthranilate synthase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.9e-62  210.6   0.0    3.8e-62  210.2   0.0    1.1  1  Chorismate_bind  chorismate binding enzyme
    1.3e-09   38.1   0.0    2.4e-09   37.2   0.0    1.4  1  GATase           Glutamine amidotransferase class-I
    2.7e-08   34.1   0.0    1.1e-06   28.9   0.0    2.3  2  Anth_synt_I_N    Anthranilate synthase component I, N termina
  ------ inclusion threshold ------
      0.019   14.7   0.0      0.033   13.9   0.0    1.3  1  Peptidase_C26    Peptidase C26


Domain annotation for each model (and alignments):
>> Chorismate_bind  chorismate binding enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  210.2   0.0   8.5e-66   3.8e-62       4     258 .]     191     447 ..     189     447 .. 0.97

  Alignments for each domain:
  == domain 1  score: 210.2 bits;  conditional E-value: 8.5e-66
                      HHHHHHHHHHHHHHTTS-SEEEEEEEEEECESS-B-HHHHHHHHHCTBSSSEEEEEEETTEEE.EEEESSEEEEEETT...SEEEEECEEEEEE CS
  Chorismate_bind   4 dYaeavekvkeeiragdlykvvlsrrlkaeleaavdplalyralrarnpapysflleledsel.lgaSPElllkvegg...rrietepiaGTra 93 
                      ++a++v ++kee++ g+l++ vls+++  +  ++  p a++r+lr+rnp+py fl++l++se  +gaSPE++++ve++    r+et pi GT++
       KOO21937.1 191 AFATKVLRAKEEFKVGNLFESVLSQTYFEP--CPHGPSAVFRRLRKRNPSPYGFLINLGNSEYlVGASPEMFVRVEKNdkgWRCETCPISGTIK 282
                      58999*************************..67789*******************99986655**********998888789*********** PP

                      HSSSHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCBSCCEEEEECCEEEEEETTEEEEEEEEEEEESTT--HHHHHHHCSS-CCCSEESH CS
  Chorismate_bind  94 rgktpeedealeeelledeKeraEhlmivdlirndLgkvakpgsvkvpelfkverysevlhlvstiegelkedvslldllkalfPtgavtGaPk 187
                      rg+++ ed+++ +++l+d+Ke +E  m++d  rnd ++++++gsv+v   +++e ys+++h+v ++eg l+e+ +++d++     + +vtGaPk
       KOO21937.1 283 RGANAMEDAENIKKILSDAKEESELTMCTDVDRNDKSRICRAGSVQVIGRRQIEMYSRLIHTVDHVEGYLREGFDAMDAFLVHTWAVTVTGAPK 376
                      ********************************************************************************************** PP

                      HHHHHHHHHHSSS--TTTTSEEEEEETTS-EEEEEE-SEEEEETTEEEEEEEEEEETT--HHHHHHHHHHH CS
  Chorismate_bind 188 krameiidelEearRgvYaGavgyldadgeaelavvIRtavvkdkelrlgaGaGIvadSdpeaEyeEtlaK 258
                        a+++++e+Ee++R +Y+Gavg+l++dg++++ +++Rt+ + ++ ++++aGa +  dS+pe E +Et+ K
       KOO21937.1 377 TWAIQFLEEMEESPRCWYGGAVGMLGFDGHLNTGLTLRTVRIANGVAEVRAGATLLFDSEPELEERETELK 447
                      ********************************************************************998 PP

>> GATase  Glutamine amidotransferase class-I
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.2   0.0   5.3e-13   2.4e-09     136     179 ..     465     507 ..     415     518 .. 0.79

  Alignments for each domain:
  == domain 1  score: 37.2 bits;  conditional E-value: 5.3e-13
                 CHHHTTEEEEEEEETTEEEEEEEEETTTEEEESSBTTSTTSTTH CS
      GATase 136 elepaglevtakseddeelmeiiekknpfvgvQFHPEststpeg 179
                 +  pa+l+ ta ++d+  +m+i++ + p+ +vQFHPEs++tp+ 
  KOO21937.1 465 AKQPACLRTTAITTDG-CVMAIQHTSLPIAAVQFHPESILTPHS 507
                 4579*********888.6************************95 PP

>> Anth_synt_I_N  Anthranilate synthase component I, N terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.9   0.0   2.4e-10   1.1e-06      56     137 ..      65     139 ..      36     143 .. 0.84
   2 ?    2.7   0.0     0.031   1.4e+02      86     101 ..     388     404 ..     340     416 .. 0.77

  Alignments for each domain:
  == domain 1  score: 28.9 bits;  conditional E-value: 2.4e-10
  Anth_synt_I_N  56 pegeeleeeepldalrellerfrsaedseptelpfvgGlvGylgYDlvreieklpksakddlnlpdarlilydtlivfDhke 137
                    +e+e++++ ++++++r+l + f  +      e   + Gl+G +gYDl+ ++e ++ ++k+d +  d+ l+l+d+++v+D + 
     KOO21937.1  65 TEEERSRQHSIFSIVRALQALFAFED-----E--PQLGLYGAFGYDLTFQFESVKLHQKRDASQRDLVLFLPDEILVIDILS 139
                    5678888888************9553.....3..378******************99**********************766 PP

  == domain 2  score: 2.7 bits;  conditional E-value: 0.031
  Anth_synt_I_N  86 telp.fvgGlvGylgYD 101
                    ++++  +gG+vG lg+D
     KOO21937.1 388 ESPRcWYGGAVGMLGFD 404
                    3344589*********9 PP

>> Peptidase_C26  Peptidase C26
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.0   7.4e-06     0.033     183     216 .]     469     500 ..     461     500 .. 0.87

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 7.4e-06
  Peptidase_C26 183 eelrveAvaeDgviEaieseeakafvlgvQwHPE 216
                      lr +A+++Dg + ai++++   ++ +vQ+HPE
     KOO21937.1 469 ACLRTTAITTDGCVMAIQHTS--LPIAAVQFHPE 500
                    56899**************99..56********9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (524 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       522  (0.0291148); expected 358.6 (0.02)
Passed bias filter:                      495  (0.0276089); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.55u 0.26s 00:00:00.81 Elapsed: 00:00:00.42
# Mc/sec: 3759.00
//
Query:       KOO21938.1  [L=309]
Description: hypothetical protein Ctob_006191 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.5e-07   30.8   6.6     0.0013   18.6   0.1    2.5  2  XAP5      XAP5, circadian clock regulator
  ------ inclusion threshold ------
      0.032   14.7   7.3      0.032   14.7   7.3    1.7  2  DUF4604   Domain of unknown function (DUF4604)


Domain annotation for each model (and alignments):
>> XAP5  XAP5, circadian clock regulator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.6   2.6   4.9e-06     0.044      42     109 ..      66     153 ..       7     187 .. 0.63
   2 !   18.6   0.1   1.4e-07    0.0013     216     242 ..     256     282 ..     221     290 .. 0.88

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 4.9e-06
        XAP5  42 eekekeeeeee...........................kkkkk..kkpnvdtsflpkaldkereekeaaereeLrkeflalqeavkaeeieitfvfy 109
                 ++k+k     +                           +k  k  k +++++sfl   l+ +++e+  a+++   +  l++q+a+++e+i++ +++ 
  KOO21938.1  66 SKKKK-----KrkaaalgglsfgddldaeaaeasptvgAK--KigKCQEANVSFLE--LNAREKEEAIAKQDVAMRALLEQQAALRDEQITLKYTYR 153
                 11111.....012234556666666666666555554334..3459999*******..54444444445666777899*****************95 PP

  == domain 2  score: 18.6 bits;  conditional E-value: 1.4e-07
        XAP5 216 KvvdrrWYernKHifPasrWeefdpek 242
                  vv+rr++e+ KH+ P + W+ ++ ++
  KOO21938.1 256 VVVERRYFEQSKHLVPFNYWRAYESTD 282
                 59*********************9875 PP

>> DUF4604  Domain of unknown function (DUF4604)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.7   7.3   3.5e-06     0.032     100     172 ..      24      85 ..       3      85 .. 0.60
   2 ?   -3.2   0.1       1.1   9.8e+03      58      77 ..     174     191 ..     169     195 .. 0.69

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 3.5e-06
     DUF4604 100 kpkkasikekasslaaksskkkkkgkvvgeedeeeed..........kskakkkekekkkakkkkkkkkkkkkkkklLSFgdd 172
                 k+k+++i    ++ +a ++                            + +a++ +  ++  +++kkkkk k++   +LSFgdd
  KOO21938.1  24 KRKREEI----EREKALTA-----------------LkkmadsgvssQPEAAAAAGADDPPSDSKKKKKRKAAALGGLSFGDD 85 
                 1111111....22223322.................13444444444556788888899999999999999***********9 PP

  == domain 2  score: -3.2 bits;  conditional E-value: 1.1
     DUF4604  58 eGkhlsaeevevekdaakgk 77 
                 +G   +a+ev+v++++a ++
  KOO21938.1 174 RG--FTADEVAVAVRNAVEQ 191
                 56..4999999999966555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (309 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       928  (0.0517597); expected 358.6 (0.02)
Passed bias filter:                      526  (0.0293379); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.51u 0.23s 00:00:00.74 Elapsed: 00:00:00.42
# Mc/sec: 2186.40
//
Query:       KOO21939.1  [L=417]
Description: hypothetical protein Ctob_006194 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (417 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1105  (0.061632); expected 358.6 (0.02)
Passed bias filter:                      704  (0.039266); expected 358.6 (0.02)
Passed Vit filter:                        59  (0.00329076); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.56u 0.27s 00:00:00.83 Elapsed: 00:00:00.43
# Mc/sec: 2918.05
//
Query:       KOO21940.1  [L=336]
Description: tartrate-resistant acid phosphatase type 5-like protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
      3e-16   60.6   0.3      4e-16   60.1   0.3    1.2  1  Metallophos  Calcineurin-like phosphoesterase


Domain annotation for each model (and alignments):
>> Metallophos  Calcineurin-like phosphoesterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.1   0.3   2.2e-20     4e-16      26     203 ..      50     241 ..      18     242 .. 0.65

  Alignments for each domain:
  == domain 1  score: 60.1 bits;  conditional E-value: 2.2e-20
                  HHHHHHTTESEEEEESTSSSSS.....HHHHHHHHHHHHHHHH.....TSEEEEEC-TTSCHHHHHHHHHHHHHHHHHHHEHHHCEEETSEEEEEETT CS
  Metallophos  26 ddllreekpdlvllaGDlvdrg.....dlekellellaalvky.....pipvylllGNHegfeeellnkygylgifsepwrsdaevfnnlplaslgsg 113
                  +  l+ +kp + ll+GD+++       +++k++ + ++ +++      ++p+y+++GNH+ +  ++  + +y  + s  w +d    ++++  s+ ++
   KOO21940.1  50 HG-LDASKPEFALLVGDNFYSAgiagnEYSKRFTQTFENVFDIsnpelNTPFYAIAGNHD-HGGNVTAQIAY-SKHSSRWTYD----DYWYTKSHTDN 140
                  33.445699999999**777744677755555555555555558889*************.33344444444.4458888888....77777774444 PP

                  E.......EEEEEEESE.CEEE.THHHHHHHHHHHSCHHHHCC......HHHHHHHHHHTTCSEEEEEESSESSCSSSCSCCHHHHH...HHHHHTTE CS
  Metallophos 114 s.......lkvlllhGg.spel.lvsldklgslnleleapepg......dewlkdlekrekadwvivlgHsplyrgsgylfgdeale...dllkkygv 193
                          ++++++ G  + ++ + ++++ +  ++       +       +wl+d+ k + ad++ v+gH p+y+++++      ++   +l  ky++
   KOO21940.1 141 GittqvvmIDTVTIAGMaYKNDsTGEIHSNEPHPM-------QarlasqLQWLEDTLKSSTADYLWVVGHYPVYSQCEHGPTGAIIRnvlPLMSKYEA 231
                  44544677788888888321113333333333334.......2445566*************************4444444444444*********** PP

                  SEEEEESSSS CS
  Metallophos 194 dlvisGHtHv 203
                    +i GH+H+
   KOO21940.1 232 SGYIAGHDHC 241
                  *********7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (336 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       473  (0.0263818); expected 358.6 (0.02)
Passed bias filter:                      366  (0.0204139); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.24s 00:00:00.72 Elapsed: 00:00:00.42
# Mc/sec: 2429.68
//
Query:       KOO21941.1  [L=451]
Description: hypothetical protein Ctob_000722 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (451 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       262  (0.0146132); expected 358.6 (0.02)
Passed bias filter:                      243  (0.0135535); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.45u 0.20s 00:00:00.65 Elapsed: 00:00:00.36
# Mc/sec: 3719.40
//
Query:       KOO21942.1  [L=517]
Description: neurofilament triplet l [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
  ------ inclusion threshold ------
       0.04   14.2  11.8        5.9    7.3   0.1    4.6  4  GAT             GAT domain
       0.23    9.2  13.3       0.23    9.2  12.4    1.3  1  Orbi_VP2        Orbivirus outer capsid protein VP2
       0.24   11.5   1.0          3    7.9   0.2    2.4  2  U5_2-snRNA_bdg  U5-snRNA binding site 2 of PrP8


Domain annotation for each model (and alignments):
>> GAT  GAT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.6   0.1    0.0034        20      30      75 ..      46      87 ..      45      89 .. 0.90
   2 ?    7.3   0.1   0.00099       5.9      32      75 ..      96     143 ..      94     144 .. 0.84
   3 ?    5.7   1.0     0.003        18      21      56 ..     307     342 ..     295     353 .. 0.75
   4 ?   -1.6   0.0      0.58   3.5e+03      40      73 ..     387     420 ..     372     435 .. 0.60

  Alignments for each domain:
  == domain 1  score: 5.6 bits;  conditional E-value: 0.0034
         GAT 30 yetckamqpriqklieetadeedllaelLqlNDeLnnvlerYerlk 75
                ++t++++++r +  + + ad+e   ael +l ++++++ +++++l 
  KOO21942.1 46 HSTLRTARERSVAAAVK-ADNE---AELSKLDEQITTLRRKHDELA 87
                67999999999999999.8999...6****************9985 PP

  == domain 2  score: 7.3 bits;  conditional E-value: 0.00099
         GAT  32 tckamqpriqklieet....adeedllaelLqlNDeLnnvlerYerlk 75 
                 +++++  r+q+l  e     ad++ +++e+  l   L +++++Ye ++
  KOO21942.1  96 ELEKLTDRLQDLSKEAqmpsADDNGTMKEIKALEARLAKAVTKYEDAY 143
                 5678889999999998887666666*******************9875 PP

  == domain 3  score: 5.7 bits;  conditional E-value: 0.003
         GAT  21 lenellkeLyetckamqpriqklieetadeedllae 56 
                  ++e+ k L    +++q +i +lie+ a+ ++ +++
  KOO21942.1 307 TQEETHKNLLAMTRESQAKIEQLIEKKAQVQERVQK 342
                 358899999999999999999999997666655554 PP

  == domain 4  score: -1.6 bits;  conditional E-value: 0.58
         GAT  40 iqklieet...adeedllae..lLqlNDeLnnvlerYer 73 
                 iq+l+e++         l+e  l  + D++  vl++ er
  KOO21942.1 387 IQHLAERLegvK-----LEEpaLVLTDDNMVDVLLQCER 420
                 555555542221.....2222255566666666666555 PP

>> Orbi_VP2  Orbivirus outer capsid protein VP2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.2  12.4   3.9e-05      0.23     158     321 ..     186     351 ..     166     354 .. 0.83

  Alignments for each domain:
  == domain 1  score: 9.2 bits;  conditional E-value: 3.9e-05
    Orbi_VP2 158 vrkelfhilqevayalkstyelvvhserrsrsenfqvgrqklielrrgikiqlqensyeklisslvqvlvegklpefirneiadldeireewikakydr 256
                 + ++  + ++eva +  s++e +v  er+ r+++ + +r  + + + +     + ++  + + +  q   e+ +p+  ++ i++ d   e+++ a+y++
  KOO21942.1 186 LMSHDANQAKEVAKQDLSKFESLVSEERKLREKELNERRTLVAKKQEINAELERREKARREAMGSQQAGGEAARPSGGQHTITEADIEEEQEKIAAYES 284
                 5566778889999999999**************99966644433333333333333333334456677788999************************9 PP

    Orbi_VP2 257 k..kikalelckilskigrklldkeeepkdeedlsvrFqvkldekfrktdqerenifevgtsrtded 321
                    +ik+   +  ++++++k + +ee +k+  +++   q k+++ + k+ q++e +++ ++s   ed
  KOO21942.1 285 AfrEIKEATGVADVNEVIQKFITQEETHKNLLAMTRESQAKIEQLIEKKAQVQERVQKLKFSTATED 351
                 988*********************************************************9998887 PP

>> U5_2-snRNA_bdg  U5-snRNA binding site 2 of PrP8
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.9   0.2    0.0005         3      15      88 ..     266     342 ..     260     355 .. 0.86
   2 ?    1.3   0.0     0.055   3.3e+02      69      87 ..     405     423 ..     400     430 .. 0.83

  Alignments for each domain:
  == domain 1  score: 7.9 bits;  conditional E-value: 0.0005
  U5_2-snRNA_bdg  15 rtakaflkvseeeiekfenrirqillssgsttftkiaakwnt...alialltyfreavvsteelldvlvkaetkiqt 88 
                     ++++a ++ ++e+i+++e+  r+i  ++g +  +++++k+ t   +  +ll+  re+  + e+l++  ++ ++++q+
      KOO21942.1 266 TITEADIEEEQEKIAAYESAFREIKEATGVADVNEVIQKFITqeeTHKNLLAMTRESQAKIEQLIEKKAQVQERVQK 342
                     56677788899****************************9883334679************9999999999999885 PP

  == domain 2  score: 1.3 bits;  conditional E-value: 0.055
  U5_2-snRNA_bdg  69 vvsteelldvlvkaetkiq 87 
                     v++ ++++dvl+++e++++
      KOO21942.1 405 VLTDDNMVDVLLQCERRLK 423
                     566789*********9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (517 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2831  (0.157901); expected 358.6 (0.02)
Passed bias filter:                      516  (0.0287802); expected 358.6 (0.02)
Passed Vit filter:                        78  (0.00435049); expected 17.9 (0.001)
Passed Fwd filter:                        39  (0.00217525); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 1.11u 0.32s 00:00:01.43 Elapsed: 00:00:00.51
# Mc/sec: 3051.85
//
Query:       KOO21943.1  [L=438]
Description: metallophosphoesterase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.4e-08   34.7   0.0    3.6e-05   24.4   0.0    2.1  2  Metallophos    Calcineurin-like phosphoesterase
  ------ inclusion threshold ------
      0.069   13.3   0.0       0.65   10.2   0.0    2.1  2  Metallophos_2  Calcineurin-like phosphoesterase superfamily d


Domain annotation for each model (and alignments):
>> Metallophos  Calcineurin-like phosphoesterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.4   0.0     4e-09   3.6e-05       3     123 ..      22     176 ..      20     200 .. 0.67
   2 !    8.5   0.0    0.0003       2.7     129     203 ..     266     371 ..     231     372 .. 0.71

  Alignments for each domain:
  == domain 1  score: 24.4 bits;  conditional E-value: 4e-09
                  EEEEESBTB........TTCCTHHHHHHHHHHHHHHHTTESEEEEESTSSSSS............HHHHHHHHH.HHHHHHH.......TSEEEEEC- CS
  Metallophos   3 ilvigDlHl........algggqlddllkllddllreekpdlvllaGDlvdrg............dlekellel.laalvky.......pipvylllG 72 
                  + +i+D+H+         +   +l+++++ + dl+++   d+++ +GD+ d+                  +++l l++l          p p + llG
   KOO21943.1  22 FGIITDVHYadadtsgtRYYRDSLPKVRASIADLASR-STDFLIELGDFKDTDvgsgcgkgkatpA----CINLtLSFLATIeaematfPGPRFHLLG 114
                  779*******999877777777777777777888888.99************9999*****75330....44443655555566666689999***** PP

                  TTS.......CHHHHHHHHHHHHHHH.........HHHHEHHHCEEETSEEEEEETTE.....EEEEEEESE CS
  Metallophos  73 NHe.......gfeeellnkygylgif.........sepwrsdaevfnnlplaslgsgs.....lkvlllhGg 123
                  NH+       +    +ln       +         +++++s++  f   p+    +g      ++v+++h++
   KOO21943.1 115 NHDvdvlnqsA----VLNA------TtnspvtdpgGPGYYSFDFPFAPEPVGNDTDGClvrdgVDVWIVHAD 176
                  ***66443320....2222......22223336545555555555555555552222244445667777766 PP

  == domain 2  score: 8.5 bits;  conditional E-value: 0.0003
                  HHHHHHHHHHHSCHHHHCC......HHHHHH..HHHHTTCSEEEEEESSESS.....................CSSSCSCCHHHHHHH.HHHTTESEE CS
  Metallophos 129 vsldklgslnleleapepg......dewlkd..lekrekadwvivlgHsply.....................rgsgylfgdealedl.lkkygvdlv 196
                  v + +l++   +  + ++        ew+++  +++r+ a+ viv+ H  l                         + l++ ++++ l ++ +g+ l 
   KOO21943.1 266 VPWADLDGGAVPGASWDDAhvpmvqMEWFAEqlQQARASAQRVIVFIHYRLDggpggpvgtglgptsvpnrawVDECTLKNAPVVRALlEETPGLVLA 363
                  55555555555555555556777889**************************9*****9977777766666664444444444444665888885554 PP

                  .EEESSSS CS
  Metallophos 197 .isGHtHv 203
                   +sGH+H 
   KOO21943.1 364 tFSGHDHA 371
                  499****7 PP

>> Metallophos_2  Calcineurin-like phosphoesterase superfamily domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.0   7.3e-05      0.65       3      62 ..      22     117 ..      21     200 .. 0.73
   2 ?    0.8   0.0     0.054   4.8e+02      83     130 ..     299     372 ..     258     401 .. 0.70

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 7.3e-05
  Metallophos_2   3 laiiSDlH.............snldaleavlealkevgvdaiihaGD....leeeep..................evleellela.....pvlaVr 58 
                    ++ii+D+H             ++l  ++a +++l++ + d +i +GD                            ++l+++++       p     
     KOO21943.1  22 FGIITDVHyadadtsgtryyrDSLPKVRASIADLASRSTDFLIELGDfkdtD----VgsgcgkgkatpacinltlSFLATIEAEMatfpgPRFHLL 113
                    89*******************9*************************44440....2334444444444444433222222222234466666677 PP

  Metallophos_2  59 GNnD 62 
                    GN+D
     KOO21943.1 114 GNHD 117
                    7777 PP

  == domain 2  score: 0.8 bits;  conditional E-value: 0.054
  Metallophos_2  83 eeaelelagekvlliHgdpl..........................gvkdalaellkeaeegsd.vvvcGHtHvp 130
                    ++a+ + a++ + +iH+  +                            ++ + ++l e++ g     ++GH H p
     KOO21943.1 299 QQARAS-AQRVIVFIHYRLDggpggpvgtglgptsvpnrawvdectLKNAPVVRALLEETPGLVlATFSGHDHAP 372
                    555555.55567777776447777777777777777777777755434444444444445555578899999988 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (438 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       289  (0.0161191); expected 358.6 (0.02)
Passed bias filter:                      254  (0.014167); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.45u 0.28s 00:00:00.73 Elapsed: 00:00:00.42
# Mc/sec: 3162.25
//
Query:       KOO21944.1  [L=206]
Description: rRNA methylase family protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.5e-08   32.8   0.0    3.9e-07   29.7   0.0    1.9  2  Methyltransf_4   Putative methyltransferase
    5.1e-05   23.1   0.0    0.00022   21.1   0.0    1.8  2  Methyltransf_31  Methyltransferase domain
    0.00011   21.5   0.0    0.00018   20.8   0.0    1.2  1  Methyltransf_2   O-methyltransferase domain
    0.00019   22.0   0.0    0.00034   21.3   0.0    1.4  1  Methyltransf_25  Methyltransferase domain
    0.00021   20.9   0.0     0.0005   19.7   0.0    1.7  1  DOT1             Histone methylation protein DOT1
    0.00066   20.3   0.1     0.0013   19.3   0.0    1.6  2  Methyltransf_11  Methyltransferase domain
  ------ inclusion threshold ------
      0.084   12.4   0.0       0.12   11.9   0.0    1.2  1  MTS              Methyltransferase small domain
      0.098   11.9   0.0       0.18   11.1   0.0    1.4  1  CMAS             Mycolic acid cyclopropane synthetase
       0.12   11.7   0.0       0.18   11.1   0.0    1.4  1  GidB             rRNA small subunit methyltransferase G
       0.18   11.5   0.0       0.41   10.4   0.0    1.5  2  PCMT             Protein-L-isoaspartate(D-aspartate) O-methyl


Domain annotation for each model (and alignments):
>> Methyltransf_4  Putative methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.7   0.0   2.2e-10   3.9e-07       4      61 ..       9      66 ..       6      77 .. 0.92
   2 ?    0.8   0.0      0.17     3e+02      32      57 ..     164     189 ..     164     202 .. 0.87

  Alignments for each domain:
  == domain 1  score: 29.7 bits;  conditional E-value: 2.2e-10
                    EEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHCTTSSEEEEES-CC CS
  Methyltransf_4  4 vvleiGcGkGeflvalAkknPdknflGiEirvkvvakvlkkiealelkNlrilrgdal 61
                    v+ ++G+G G+f+v+ A + P++ ++G+E+++ +   + ++ ++  l+Nl++++gd l
      KOO21944.1  9 VLYDMGSGAGRFVVHAALALPHVRVVGVELSSVRHSVAFAASKRAALSNLHVIHGDML 66
                    6789***************************************************964 PP

  == domain 2  score: 0.8 bits;  conditional E-value: 0.17
                     ES-HHHHHHHHHHHHHCTTSSEEEEE CS
  Methyltransf_4  32 EirvkvvakvlkkiealelkNlrilr 57 
                     E+r ++++++ +  +al+l+Nlr+++
      KOO21944.1 164 ELRDRSLRAAAQILNALDLTNLRVHH 189
                     67888999999999*********986 PP

>> Methyltransf_31  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.1   0.0   1.2e-07   0.00022       5      72 ..       8      72 ..       5     114 .. 0.81
   2 ?   -0.6   0.0      0.56     1e+03      48     109 ..     177     196 ..     165     202 .. 0.56

  Alignments for each domain:
  == domain 1  score: 21.1 bits;  conditional E-value: 1.2e-07
  Methyltransf_31  5 lrvlDlGCGtGeltfelaeelgpkaevvGiDiseeaielArenaqklgldnveFeqgdieeleklled 72
                      +++D G+G+G+++  +a ++ p+ +vvG++ s    ++A + +++  l+n+++ +gd+ + ++   d
       KOO21944.1  8 DVLYDMGSGAGRFVVHAA-LALPHVRVVGVELSSVRHSVAFAASKRAALSNLHVIHGDMLTSPCE--D 72
                     5789**************.9*************876666666668889***********998853..4 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 0.56
  Methyltransf_31  48 aqklgldnveFeqgdieeleklledekfDlilsnevlnaladpdkileeiervlkpggilli 109
                      +  l l+n+                                          rv +p+g++++
       KOO21944.1 177 LNALDLTNL------------------------------------------RVHHPHGRCIV 196
                      444444444..........................................55555555555 PP

>> Methyltransf_2  O-methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.8   0.0     1e-07   0.00018      65     139 ..       9      84 ..       6      96 .. 0.85

  Alignments for each domain:
  == domain 1  score: 20.8 bits;  conditional E-value: 1e-07
                     EEEEET-TTSHHHHHHHHH-TT-EEEEEE-HHHHHHHHHHS.-----TTEEEEES-TTTS-----SEEEEESSGGG CS
  Methyltransf_2  65 slvDvGGGtGalakaivsayPtikvivfDlpeVveaAkehl.sageeervefvgGdffkdslPeaDaillkrvlhD 139
                     +l+D+G G+G ++ +++ a P+++v+  +l++V ++      + ++ ++++++ Gd+  ++  +a ++ ++++l+D
      KOO21944.1   9 VLYDMGSGAGRFVVHAALALPHVRVVGVELSSVRHSVAFAAsKRAALSNLHVIHGDMLTSPCEDATLVYFASLLFD 84 
                     699***************************98854433222135677899********99999************9 PP

>> Methyltransf_25  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.3   0.0   1.9e-07   0.00034       3      65 ..      12      75 ..      10     103 .. 0.83

  Alignments for each domain:
  == domain 1  score: 21.3 bits;  conditional E-value: 1.9e-07
                     EET-TTSHHHHHHHCTSTSSEEEEEESSHHHHHHHHHHHHHTTT.TEEEEESBCCGBSSSTTTE CS
  Methyltransf_25  3 dlGcGtGrltlalakrlgkakvtgvDiseemleaareraeeegl.nvefvqgdaedlpfedgsf 65
                     d+G G Gr++ ++a +l++ +v+gv++s+     a +  +++ l n+++++gd+ + p ed++ 
       KOO21944.1 12 DMGSGAGRFVVHAALALPHVRVVGVELSSVRHSVAFAASKRAALsNLHVIHGDMLTSPCEDATL 75
                     9*************99989*********98877777777666668************9998654 PP

>> DOT1  Histone methylation protein DOT1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.7   0.0   2.8e-07    0.0005      43      82 ..       7      46 ..       2     106 .. 0.86

  Alignments for each domain:
  == domain 1  score: 19.7 bits;  conditional E-value: 2.8e-07
                T-EEEEES-TTSHHHHHHHHHH--SEEEEEE--HHHHHHH CS
        DOT1 43 edvFvDLGSGvGnvvlqaalevgcklsvGvEimdnasela 82
                 dv +D+GSG G+ v+ aal++     vGvE++    ++a
  KOO21944.1  7 GDVLYDMGSGAGRFVVHAALALPHVRVVGVELSSVRHSVA 46
                6899****************************97655544 PP

>> Methyltransf_11  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.3   0.0   7.4e-07    0.0013       2      61 ..      12      74 ..      11     106 .. 0.87
   2 ?   -3.2   0.0         8   1.4e+04      86      96 .]     186     196 ..     185     196 .. 0.87

  Alignments for each domain:
  == domain 1  score: 19.3 bits;  conditional E-value: 7.4e-07
                     EET-TTSHHHHHHHHTT..SEEEEEES-HHHHHHHHHHCCHHT-.EEEETTEECCCTSS-TT- CS
  Methyltransf_11  2 dvGcGtGrlaealakrg..arvvgvDlskemlklakekaseegl.kvefvvadaeklpfedns 61
                     d+G+G+Gr++ + a +    rvvgv+ls   + +a ++++++ l ++ ++++d+ + p ed++
       KOO21944.1 12 DMGSGAGRFVVHAALALphVRVVGVELSSVRHSVAFAASKRAALsNLHVIHGDMLTSPCEDAT 74
                     89**********99555689************99988888888888999******99999965 PP

  == domain 2  score: -3.2 bits;  conditional E-value: 8
                      HHEEEEEEEEE CS
  Methyltransf_11  86 RvLkpgGllvi 96 
                      Rv  p G++++
       KOO21944.1 186 RVHHPHGRCIV 196
                      8999****986 PP

>> MTS  Methyltransferase small domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   6.9e-05      0.12      33      92 ..       8      68 ..       1      76 [. 0.72

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 6.9e-05
                SEEEEET-TTSHHHHHHHHHTTC.EEEEEESBHHHHHHHHHHHHHTTGC.EEEEE-STTTT CS
         MTS 33 gkvlDlGcGaGvlgaalakespeaevtlvdvdarAlesakenleankle.vevvasdvlee 92
                + + D+G+GaG   +++a + p+++v+ v+ +     +a +  ++ +l+ ++v++ d+l  
  KOO21944.1  8 DVLYDMGSGAGRFVVHAALALPHVRVVGVELSSVRHSVAFAASKRAALSnLHVIHGDMLTS 68
                4567*******************98888888765444444444455554688999988765 PP

>> CMAS  Mycolic acid cyclopropane synthetase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   9.9e-05      0.18      62     101 ..       6      46 ..       2      62 .. 0.81

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 9.9e-05
                 TT-EEEEES-TTSHHHHHHH.HHH--EEEEEES-HHHHHHH CS
        CMAS  62 pGmtlLdiGcGWGslvrrav.erydvkvvglTlSkeqakla 101
                 +G+ l d+G G G  v++a+ +   v+vvg+ lS+ ++ +a
  KOO21944.1   6 HGDVLYDMGSGAGRFVVHAAlALPHVRVVGVELSSVRHSVA 46 
                 699***********99888724569*********9887765 PP

>> GidB  rRNA small subunit methyltransferase G
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   9.9e-05      0.18      52     107 ..      10      65 ..       2      97 .. 0.89

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 9.9e-05
                 EEEETSTTTTTHHHHHHH-TTSEEEEEES-HHHHHHHHHHHHHCT-SSEEEEES-C CS
        GidB  52 viDvGsGaGlPGipLaiarpelkltLleslekkiaFLeevkeelklenveiveara 107
                 + D GsGaG   +  a+a p+++++ +e ++ + +    ++++ +l+n+++++ ++
  KOO21944.1  10 LYDMGSGAGRFVVHAALALPHVRVVGVELSSVRHSVAFAASKRAALSNLHVIHGDM 65 
                 78**************************999999999999************9886 PP

>> PCMT  Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.0   0.00023      0.41      74     132 ..       7      64 ..       2      72 .. 0.89
   2 ?   -2.8   0.0       2.5   4.4e+03     113     135 ..     172     194 ..     167     202 .. 0.76

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00023
                 T-EEEEES-TTSHHHHHHHHHHCTTCEEEEEESBHHHHHHHHHHHHHCTTCSEEEEES- CS
        PCMT  74 garvLevGsGsGyltavlarlvgekgrvvsierikelveeakrnlkkldlenvivvvgD 132
                 g+   ++GsG+G   +v a l  ++ rvv++e +    + a +  k+ +l+n++v++gD
  KOO21944.1   7 GDVLYDMGSGAGR-FVVHAALALPHVRVVGVELSSVRHSVAFAASKRAALSNLHVIHGD 64 
                 666779******6.5788888899999*******9999999999**************9 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 2.5
                 HHHHHHHHCTTCSEEEEES-GGG CS
        PCMT 113 eakrnlkkldlenvivvvgDGrk 135
                 +a + l++ldl+n+ v++  Gr 
  KOO21944.1 172 AAAQILNALDLTNLRVHHPHGRC 194
                 56677889999999999988875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (206 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       346  (0.0192983); expected 358.6 (0.02)
Passed bias filter:                      294  (0.016398); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.41u 0.24s 00:00:00.64 Elapsed: 00:00:00.40
# Mc/sec: 1539.98
//
Query:       KOO21945.1  [L=304]
Description: cathepsin z-like protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.9e-42  145.2  14.5    4.7e-42  144.5  14.5    1.3  1  Peptidase_C1    Papain family cysteine protease
    0.00099   18.0   0.7     0.0015   17.4   0.7    1.3  1  Peptidase_C1_2  Peptidase C1-like family
  ------ inclusion threshold ------
      0.016   15.1   0.0      0.064   13.2   0.0    2.0  2  Peptidase_C70   Papain-like cysteine protease AvrRpt2


Domain annotation for each model (and alignments):
>> Peptidase_C1  Papain family cysteine protease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  144.5  14.5   7.9e-46   4.7e-42       1     208 [.      46     287 ..      46     297 .. 0.81

  Alignments for each domain:
  == domain 1  score: 144.5 bits;  conditional E-value: 7.9e-46
                   STSCEETTTTTTG..SG---B-T...SSBTHHHHHHHHHHHHHHHHHHS...SS---B-HHHHHHHST.TTST...GGGBB-HHHHHHHHHHTEBEB CS
  Peptidase_C1   1 lpesvDwrekgga..vtpvkdqg...sCGsCWafsavgaledrlaiktk...kklvslSeqelvdCsk.eene...gCnGGlmenafeyikkggivt 85 
                   lp+s+ w +k+g   +++v++q+    CGsCWa+++++al dr++i ++     +  lS q +v+C + +       C+GG  + ++e +k+ gi +
    KOO21945.1  46 LPASFTWANKDGVnyLSTVRNQHipvYCGSCWAMGSTSALTDRWNILNGvgaLPQHMLSVQMVVSCGNdK--VgcgSCHGGDDSGVYELAKQYGIPH 140
                   699*****9655448*******99999*******************99985556789*********9853..23469******************** PP

                   TTTS--SSSCS......................SS-CGCGGGSEEBEESEEEEEESSBHHHHHHHHHHHSSEEEEEECCSHHHHTEESSEESSTSCE CS
  Peptidase_C1  86 ekdypYkakeg......................gkCkkkkkkekvakikgygkvkenseealkkalakngPvsvaidaseedfqlYksGvyketecs 160
                   e++ +Y a+++                      + C+k ++ +k + i+ yg+ +    +a+k++++ +gP+s+ +da+++ +++Y++Gv++e+ ++
    KOO21945.1 141 ESCSNYMATNTqcnedaavtttnkpscytcspgSGCTKIENYNK-MFISAYGSAR--GYDAMKSEIYDRGPISCGVDATDK-MEKYTGGVFSEDGAH 233
                   *******9998889999999999965544444333333333322.3444444443..5699*******************5.***********6444 PP

                   TSS-EEEEEEEEEEEET..TEEEEEEE-SBTTTSTBTTEEEEESSSS......TGG CS
  Peptidase_C1 161 ktelnhavlivGygven..gkkyWivkNsWgtdwgekGYiriargkn......nec 208
                     ++nh + +vG+gv+n  + +yW v+NsWg+ wge+GY+ri+++kn      ++ 
    KOO21945.1 234 --ATNHIISVVGWGVDNstKDEYWWVRNSWGEPWGEHGYMRIVTSKNtgpagtGNN 287
                   ..58*************88889**********************999655555444 PP

>> Peptidase_C1_2  Peptidase C1-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.4   0.7   2.6e-07    0.0015     357     396 ..     233     272 ..     198     278 .. 0.88

  Alignments for each domain:
  == domain 1  score: 17.4 bits;  conditional E-value: 2.6e-07
                     ----EEEEEEEEEE-TTSSEEEEEEE-SBTTTSTBTTEEE CS
  Peptidase_C1_2 357 slmtHamvltgvdvdddgkvtkwkvEnsWGedsGekGyfv 396
                      + +H + ++g  vd++ k + w v nsWGe  Ge+Gy+ 
      KOO21945.1 233 HATNHIISVVGWGVDNSTKDEYWWVRNSWGEPWGEHGYMR 272
                     5678999*******************************74 PP

>> Peptidase_C70  Papain-like cysteine protease AvrRpt2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.0   1.1e-05     0.064      41     105 ..      14      80 ..       1      95 [. 0.78
   2 ?   -2.0   0.0      0.53   3.2e+03      85     103 ..     198     216 ..     186     222 .. 0.80

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 1.1e-05
  Peptidase_C70  41 elaalvdk...wslmdeglngeekialaeklGlveevpeppqsyeieklvklL....raggPlivaiaspgd 105
                    +l+ +v++   w++md gl g++ i++ +++ l    p+    + +++ v++L    ++++P++++  ++ +
     KOO21945.1  14 QLNPVVRNdarWAAMDAGLTGNATIRMRSSESL----PASF-TWANKDGVNYLstvrNQHIPVYCGSCWAMG 80 
                    44555777788**********************....4444.3888888888844445899*****999876 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 0.53
  Peptidase_C70  85 klvklLraggPlivaiasp 103
                    ++ + + + gP+ ++++++
     KOO21945.1 198 AMKSEIYDRGPISCGVDAT 216
                    5667788999****99765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (304 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       572  (0.0319036); expected 358.6 (0.02)
Passed bias filter:                      311  (0.0173462); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.47u 0.25s 00:00:00.72 Elapsed: 00:00:00.42
# Mc/sec: 2157.22
//
Query:       KOO21946.1  [L=195]
Description: hypothetical protein Ctob_000720 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (195 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       248  (0.0138323); expected 358.6 (0.02)
Passed bias filter:                      219  (0.0122148); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.25s 00:00:00.61 Elapsed: 00:00:00.38
# Mc/sec: 1538.60
//
Query:       KOO21947.1  [L=814]
Description: hypothetical protein Ctob_000712 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      5e-11   42.9   0.0    1.1e-10   41.8   0.0    1.5  1  Methyltransf_21  Methyltransferase FkbM domain
    0.00038   20.6   0.9    0.00071   19.7   0.9    1.3  1  Neur_chan_memb   Neurotransmitter-gated ion-channel transmemb
  ------ inclusion threshold ------
      0.027   13.9   0.1        3.2    7.1   0.0    2.3  2  Neur_chan_LBD    Neurotransmitter-gated ion-channel ligand bi
      0.056   12.6   0.0      0.092   11.9   0.0    1.2  1  DUF1708          Domain of unknown function (DUF1708)


Domain annotation for each model (and alignments):
>> Methyltransf_21  Methyltransferase FkbM domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.8   0.0   2.5e-14   1.1e-10       3     168 ..     587     769 ..     585     775 .. 0.70

  Alignments for each domain:
  == domain 1  score: 41.8 bits;  conditional E-value: 2.5e-14
  Methyltransf_21   3 GanigvwdsfanltarlcggggevlaiEPvpnslpkfeklranll................tlavgndvglyelivegksggkyfpfavgdtng 80 
                      G ++g  +s++ +t+  + ++g    iEP+p+    fe  r                    t+a  ++v+++ + v+  s+++  +  +  +++
       KOO21947.1 587 GGHDGLRASNTVFTESCRSWRGLL--IEPNPS---AFELIRTHRPgvlaargavctvrgraTFAARRSVSSARHGVARMSADETGGLETLMNQN 675
                      677876556665665567777877..******...55555333225555555555555666677777776666555555555555555555556 PP

  Methyltransf_21  81 fstssvlg........gedaryievpvvtldsfleeikksridllkiDvEGaElevLeG.aqkglkrcqpnlivvEvhkfkefetelfdeirqf 165
                      f ++ + +         ++a  i+vp+  l + l  +  +r+d++++DvEGaEl vLeG +   l    + ++vvE+ +  +++t    + +++
       KOO21947.1 676 FERAGYKEraptawlnTTRALRIDVPCAPLHDYLALFSVRRVDIFWLDVEGAELAVLEGfDPTNLGGISIGILVVEMRFNDARRTF---RTLRL 766
                      6666444466667777999************9999999**********************9999999999*******987665553...33333 PP

  Methyltransf_21 166 lre 168
                      l  
       KOO21947.1 767 LSG 769
                      455 PP

>> Neur_chan_memb  Neurotransmitter-gated ion-channel transmembrane region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.7   0.9   1.6e-07   0.00071      27      72 ..     271     315 ..     263     319 .. 0.90

  Alignments for each domain:
  == domain 1  score: 19.7 bits;  conditional E-value: 1.6e-07
                     HHHHHHHHHHHHHHHHHHHHHHHHHHHS-STTHHHHHHHHHHHHHH CS
  Neur_chan_memb  27 tLgIsvlLslTvfllliteilPktSlvipLigkYLlftmvfvtlsi 72 
                      + I+ lL++  f  ++te+lP++S+++ +++ Y+l  +v+  l+i
      KOO21947.1 271 RVTITLLLAIIAFRYVVTEKLPQISYATLIDL-YVLSSFVLAALII 315
                     467*****************************.********99877 PP

>> Neur_chan_LBD  Neurotransmitter-gated ion-channel ligand binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.4   0.0    0.0049        22      26      63 ..      41      78 ..      29      95 .. 0.85
   2 ?    7.1   0.0   0.00071       3.2      78     169 ..     131     226 ..     115     276 .. 0.65

  Alignments for each domain:
  == domain 1  score: 4.4 bits;  conditional E-value: 0.0049
                   EEEEEEEEEEEEEEEETTTTEEEEEEEEEEEEE-STT- CS
  Neur_chan_LBD 26 vkVkvelslsqiidvdeknqvlttnvwlkqqWtDerLk 63
                    +V v+  +++++dv+ + q++ ++  ++ +W  ++Lk
     KOO21947.1 41 RTVMVRALIHRLLDVNLVLQQFAVKSQIEASWFEPELK 78
                   5799999****************************997 PP

  == domain 2  score: 7.1 bits;  conditional E-value: 0.00071
                    ETTTS----EEETT.....CSCCESSSSS.S-EEEEEETTSEEEEEEEEEEEEE-----SSTTT-EEEEEEEEEESSS-TTTEEEEESSSSSEEE. CS
  Neur_chan_LBD  78 psekiWlPdivlyn.....kadeehevte.knvnlrvssdGtvlwsppailkssCsidvkyFPfDeqnCslkfgSwtyngeeidlkwkeeekvvee 167
                    ++++ W P +++ n     +  ee +    ++     s+   v +    + ++s +++++ FP+D q  ++++ S   +    +  +++ + v++ 
     KOO21947.1 131 SAKRFWAPRLYFDNvltmeN--EESWYHFyDSAPGEASNPPMVCLHWSFTGTFSEPMELSSFPLDAQILTMRLVSGHEEVRAANPSVEKRTIVQRG 224
                    34488999999999765322..222222204444566667788888899999999*****************999777666666666665554433 PP

                    TC CS
  Neur_chan_LBD 168 ee 169
                     +
     KOO21947.1 225 AR 226
                    33 PP

>> DUF1708  Domain of unknown function (DUF1708)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   2.1e-05     0.092      24      81 ..     479     533 ..     476     535 .. 0.90

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 2.1e-05
     DUF1708  24 dtpfllLpFrpesdpsalrtflrnfFpkgqeegsslkgeellqelrktdiltLisvlk 81 
                 +tpfl   F + sd +++ +f++++ p+   +++++k+e l++ +r++ ++   +v+k
  KOO21947.1 479 TTPFLVATFASASDARKVLAFVAEVLPD---DEHEYKEEVLAEDVRLAKPYFRSGVIK 533
                 58*************************7...6789************99998777766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (814 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       486  (0.0271069); expected 358.6 (0.02)
Passed bias filter:                      425  (0.0237046); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.65u 0.30s 00:00:00.95 Elapsed: 00:00:00.47
# Mc/sec: 5242.43
//
Query:       KOO21948.1  [L=310]
Description: hypothetical protein Ctob_000713 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.2e-09   37.9   1.9    2.3e-09   37.0   1.9    1.4  1  Stealth_CR3  Stealth protein CR3, conserved region 3
    3.8e-08   33.5   0.0    7.7e-08   32.5   0.0    1.5  1  Stealth_CR2  Stealth protein CR2, conserved region 2
  ------ inclusion threshold ------
       0.12   12.3   0.0       0.33   10.9   0.0    1.8  1  Stealth_CR4  Stealth protein CR4, conserved region 4


Domain annotation for each model (and alignments):
>> Stealth_CR3  Stealth protein CR3, conserved region 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.0   1.9   3.8e-13   2.3e-09       2      47 ..     198     243 ..     197     243 .. 0.98

  Alignments for each domain:
  == domain 1  score: 37.0 bits;  conditional E-value: 3.8e-13
  Stealth_CR3   2 HapktlsrsvlkelerrfpeelartashrFRsmnDlsmafsyhhyi 47 
                  H+p  +++ vl e+e r+pe   rt++hr R+m+ +   f y+hy+
   KOO21948.1 198 HMPVLFNVRVLWEIESRWPELMSRTRAHRKREMDEIELNFFYQHYL 243
                  *********************************************5 PP

>> Stealth_CR2  Stealth protein CR2, conserved region 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.5   0.0   1.3e-11   7.7e-08      48      91 ..      37      81 ..      23      97 .. 0.84

  Alignments for each domain:
  == domain 1  score: 32.5 bits;  conditional E-value: 1.3e-11
  Stealth_CR2 48 khkdilkeesk.lptfnsnaielnlhripglsekflylnDDvflg 91
                  h+ +++e  + lpt+nsnai + lh ip++s  f+y +DD++  
   KOO21948.1 37 PHNAFFPEPLRaLPTYNSNAILAALHWIPNISRWFIYSDDDIVAS 81
                 689999996443*****************************9865 PP

>> Stealth_CR4  Stealth protein CR4, conserved region 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   5.5e-05      0.33       3      21 ..     281     299 ..     279     306 .. 0.82

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 5.5e-05
  Stealth_CR4   3 irrrrkkffCLNDdidhek 21 
                  + ++r+ f+C ND+ +h +
   KOO21948.1 281 LSSDRYNFVCFNDGFNHGA 299
                  67899**********9864 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (310 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       353  (0.0196888); expected 358.6 (0.02)
Passed bias filter:                      288  (0.0160634); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.44u 0.20s 00:00:00.64 Elapsed: 00:00:00.38
# Mc/sec: 2472.81
//
Query:       KOO21949.1  [L=184]
Description: phosphorylated carbohydrates phosphatase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    6.5e-05   22.9   0.1    0.00011   22.2   0.1    1.4  1  Hydrolase_like  HAD-hyrolase-like
    0.00013   22.1   0.1     0.0083   16.2   0.0    2.1  2  HAD_2           Haloacid dehalogenase-like hydrolase


Domain annotation for each model (and alignments):
>> Hydrolase_like  HAD-hyrolase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.2   0.1   1.2e-08   0.00011      16      57 ..     114     154 ..      75     168 .. 0.83

  Alignments for each domain:
  == domain 1  score: 22.2 bits;  conditional E-value: 1.2e-08
                     HH---GGGEEEEES-TTTHHHHHHHCT-EEEEESSSSS-TTT CS
  Hydrolase_like  16 vlgsdpeevlmiGDrlatDiagAnnaGwksvLVltGvtrped 57 
                     +l+ +pe++++  D+  +D++++++a +k v+V  G+ r+++
      KOO21949.1 114 QLERPPERCVVFSDD-VDDVLAGHDATAKVVAVMGGARRNGA 154
                     34889**********.*********************99866 PP

>> HAD_2  Haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.0   9.3e-07    0.0083       1      93 [.      16     112 ..      16     116 .. 0.79
   2 !    5.2   0.1    0.0022        20     147     178 .]     114     145 ..     104     145 .. 0.87

  Alignments for each domain:
  == domain 1  score: 16.2 bits;  conditional E-value: 9.3e-07
       HAD_2   1 iiFDlDgTlldteeliiqafnelleeyglselseeelrkliglslrellrklgeseeeeekieellrkyneekkk....kevkpydgvkelLeeLke 93 
                 +iF lD  l +  e++   ++ +++e+g+ e++++e+ + ig+  + ++++ +  ++  +  ++l  ++++ k++      + + dg+ke L  L+e
  KOO21949.1  16 VIFKLDVMLSNAIEMHRRPWALVAAEQGMREPDDDEILRAIGMRPERAIQQTFRWTDDWGETQKLAFEHYHAKNTvlrdFDFAVADGAKEWLTLLNE 112
                 79**************************************************997765554444433333333333444678999999999999965 PP

  == domain 2  score: 5.2 bits;  conditional E-value: 0.0022
       HAD_2 147 klklkkeeviyvGDsptDieaakkagikviav 178
                 +l+  +e+++++ D   D+ a++ a  kv+av
  KOO21949.1 114 QLERPPERCVVFSDDVDDVLAGHDATAKVVAV 145
                 4566799**********************997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (184 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       329  (0.0183502); expected 358.6 (0.02)
Passed bias filter:                      296  (0.0165096); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.38u 0.23s 00:00:00.61 Elapsed: 00:00:00.37
# Mc/sec: 1477.36
//
Query:       KOO21950.1  [L=504]
Description: hypothetical protein Ctob_000711 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
  ------ inclusion threshold ------
       0.14   11.8   0.0       0.25   10.9   0.0    1.3  1  ssDNA-exonuc_C  Single-strand DNA-specific exonuclease, C ter


Domain annotation for each model (and alignments):
>> ssDNA-exonuc_C  Single-strand DNA-specific exonuclease, C terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   1.4e-05      0.25     126     154 ..     162     190 ..     155     202 .. 0.91

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 1.4e-05
  ssDNA-exonuc_C 126 lkaLakhlgwseetlkfmikVFfeLeFVt 154
                     +++L +h++ ++++ +f ++VF eL FV 
      KOO21950.1 162 VPKLREHCHSPRRLFEFASRVFVELAFVH 190
                     5799************************7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (504 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       467  (0.0260472); expected 358.6 (0.02)
Passed bias filter:                      382  (0.0213063); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.53u 0.23s 00:00:00.76 Elapsed: 00:00:00.40
# Mc/sec: 3820.97
//
Query:       KOO21951.1  [L=160]
Description: hypothetical protein Ctob_000716 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
  ------ inclusion threshold ------
        9.5    6.1  11.0        4.3    7.1   7.0    2.3  2  Gly-zipper_YMGG  YMGG-like Gly-zipper


Domain annotation for each model (and alignments):
>> Gly-zipper_YMGG  YMGG-like Gly-zipper
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.1   7.0   0.00024       4.3      12      42 ..      40      94 ..      36      98 .. 0.80
   2 ?    6.9   4.6   0.00028         5       7      41 ..      81     113 ..      77     118 .. 0.72

  Alignments for each domain:
  == domain 1  score: 7.1 bits;  conditional E-value: 0.00024
                     XXXXXXXXXXXXXXXXX.........................XXXXXXXXXXXXXX CS
  Gly-zipper_YMGG 12 aaGAvvGaliGsgggkG.........................AaiGAaaGalaGga 42
                     ++GA+ G ++   g +G                         AaiG+a+G  +G +
       KOO21951.1 40 GVGAACGSAFF-VGLRGgrsllpfpavegptlgnlrddftlsAAIGGATGTFVGVV 94
                     67888888887.333445678999999999999999999999**********9976 PP

  == domain 2  score: 6.9 bits;  conditional E-value: 0.00028
                      XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
  Gly-zipper_YMGG   7 AaiGAaaGAvvGaliGsgggkGAaiGAaaGalaGg 41 
                      AaiG+a+G  vG ++    + +  iG  +G la +
       KOO21951.1  81 AAIGGATGTFVGVVVD--FADNPFIGTSIGILATA 113
                      8888888888888888..44566777777777655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (160 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       417  (0.0232584); expected 358.6 (0.02)
Passed bias filter:                      273  (0.0152267); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.25s 00:00:00.61 Elapsed: 00:00:00.38
# Mc/sec: 1250.18
//
Query:       KOO21952.1  [L=352]
Description: trafficking protein particle complex 8 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
  ------ inclusion threshold ------
      0.072   12.8   1.4      0.073   12.8   0.2    1.5  2  Glyco_transf_34  galactosyl transferase GMA12/MNN10 family
       0.13   12.5   0.0       0.32   11.3   0.0    1.6  1  MHB              Haemophore, haem-binding


Domain annotation for each model (and alignments):
>> Glyco_transf_34  galactosyl transferase GMA12/MNN10 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.2   8.1e-06     0.073      63      82 ..     170     189 ..     150     195 .. 0.89
   2 ?   -3.2   0.1       0.6   5.4e+03      98     205 ..     322     336 ..     298     348 .. 0.47

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 8.1e-06
  Glyco_transf_34  63 klpairaamkkyPeaewiWw 82 
                      +l ai+a ++++P++ew+W+
       KOO21952.1 170 QLKAIKAYLEAHPDIEWVWF 189
                      6899***************8 PP

  == domain 2  score: -3.2 bits;  conditional E-value: 0.6
  Glyco_transf_34  98 ehvlkperLeelllkntpvvplrryketnlvedgedvlviisqdwnglnagsflirnsewsklllDlwadpllrekkkavtesdeqsaleylle 191
                      ehv+  e++                                                                                     
       KOO21952.1 322 EHVI--ETF------------------------------------------------------------------------------------- 328
                      2222..111..................................................................................... PP

  Glyco_transf_34 192 khpevlskvglveq 205
                            +k + +++
       KOO21952.1 329 ------EKQVKINE 336
                      ......22223333 PP

>> MHB  Haemophore, haem-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   3.6e-05      0.32      16      45 ..     171     200 ..     163     208 .. 0.82

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 3.6e-05
         MHB  16 aastsaYLdthPdvnqaltslkgqprdqar 45 
                  ++ +aYL++hPd++ +  + +++p+ + r
  KOO21952.1 171 LKAIKAYLEAHPDIEWVWFDYSSMPQGDDR 200
                 67899*************999999995544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (352 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       546  (0.0304535); expected 358.6 (0.02)
Passed bias filter:                      447  (0.0249317); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.44u 0.23s 00:00:00.67 Elapsed: 00:00:00.36
# Mc/sec: 2892.60
//
Query:       KOO21953.1  [L=1068]
Description: beta-mannosidase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.2e-13   49.7   0.0    4.3e-13   48.8   0.0    1.5  1  Ig_mannosidase   Ig-fold domain
    5.4e-10   39.8   0.0    1.4e-09   38.4   0.0    1.8  1  Mannosidase_ig   Mannosidase Ig/CBM-like domain
      0.002   17.3   0.0     0.0039   16.3   0.0    1.4  1  Glyco_hydro_2_C  Glycosyl hydrolases family 2, TIM barrel dom
     0.0036   18.0   0.0     0.0075   16.9   0.0    1.4  1  Glyco_hydro_2    Glycosyl hydrolases family 2


Domain annotation for each model (and alignments):
>> Ig_mannosidase  Ig-fold domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.8   0.0   9.7e-17   4.3e-13      16      81 .]    1001    1066 ..     980    1066 .. 0.91

  Alignments for each domain:
  == domain 1  score: 48.8 bits;  conditional E-value: 9.7e-17
  Ig_mannosidase   16 gfkvtlsadavAlfVwLelsgvdgrFsdNgFdLlpgesktvtftvnedttleelkksltvrslwdn 81  
                      + +v l+a+++A+fV L +  v g Fsd +F++l g++kt+tft++++ + +++   l+vrsl d+
      KOO21953.1 1001 NASVRLRAERTAAFVSLASLHVAGAFSDGAFMMLAGSEKTITFTAQKQGSWDDFGVGLRVRSLCDT 1066
                      568999*********************************************************985 PP

>> Mannosidase_ig  Mannosidase Ig/CBM-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.4   0.0   3.2e-13   1.4e-09       2      95 .]     878     977 ..     877     977 .. 0.92

  Alignments for each domain:
  == domain 1  score: 38.4 bits;  conditional E-value: 3.2e-13
  Mannosidase_ig   2 klevwvvsdllepvqgtlelrlidl.tgk..llaetsttpvtvgansstevaeidvdellaat.....ggadpravvlvarledatgevlatnvy 88 
                      l+v+++sdl+++++ +l l+++++ ++   +l++ + + + ++a++++e +++++d+llaa+      + +++++++++++   +g+   ++++
      KOO21953.1 878 MLTVHLTSDLTRDLSDNLDLEIYRWaDSPavVLWRVT-HLAVAPALGTQEGYTVNIDDLLAAAsggagPKLTRNETFVRLSFGG-NGTGPIEAFH 970
                     799**********************655544466666.***********************999***9999************6.********** PP

  Mannosidase_ig  89 wpvplKd 95 
                     +++p+K+
      KOO21953.1 971 FWTPMKY 977
                     ******9 PP

>> Glyco_hydro_2_C  Glycosyl hydrolases family 2, TIM barrel domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.0   8.7e-07    0.0039      99     152 ..     574     627 ..     531     644 .. 0.82

  Alignments for each domain:
  == domain 1  score: 16.3 bits;  conditional E-value: 8.7e-07
                      CTTTSGGGHHHHHHHHHHHHHHHTT-TTEEEEEEEESSCHHHHHHHHHHHHHHH CS
  Glyco_hydro_2_C  99 vladnpewlkavldrieelverdkNHpsviiWSlgNEsgagedikalaelikkl 152
                          ++++l  v + +++ v+r   Hps++iW  +NE  ++ +  +l+++ ++l
       KOO21953.1 574 LYPRDGHFLDLVRKEVTQQVARLAAHPSIVIWGGSNENEYAMQWFNLSRVNRDL 627
                      445678889999999***********************9999998888877765 PP

>> Glyco_hydro_2  Glycosyl hydrolases family 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   0.0   1.7e-06    0.0075      45      93 ..     364     419 ..     328     425 .. 0.67

  Alignments for each domain:
  == domain 1  score: 16.9 bits;  conditional E-value: 1.7e-06
                    TTSTEEEE.EEEEEEEESTT-EEEE...EEEEEES--BBEC...CCB--EEEEEEE CS
  Glyco_hydro_2  45 aegkkvke.essvlslgngetksik...lelevknpklWsp...etPnLYtlkvel 93 
                    a +++v+e  + +l++g++e+++     ++l v+ p lW+p   +++ LY+l+++l
     KOO21953.1 364 ARRSVVAEsGAVELAEGAEEEEEAApylARLLVDAPTLWWPrgyGEQPLYELRASL 419
                    33333333233333333333333337778999************9********998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1068 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       500  (0.0278878); expected 358.6 (0.02)
Passed bias filter:                      373  (0.0208043); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.69u 0.29s 00:00:00.98 Elapsed: 00:00:00.44
# Mc/sec: 7286.44
//
Query:       KOO21954.1  [L=507]
Description: hypothetical protein Ctob_000715 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.2e-25   87.7   0.0    7.9e-11   42.1   0.1    3.1  4  CH          Calponin homology (CH) domain
    5.1e-07   30.1   0.0    1.2e-05   25.6   0.0    2.5  2  EF-hand_7   EF-hand domain pair
    0.00032   20.0   0.1       0.15   11.7   0.0    2.7  2  EF-hand_1   EF hand
      0.004   17.0   0.0        6.9    6.9   0.0    3.2  3  EF-hand_6   EF-hand domain
  ------ inclusion threshold ------
      0.034   14.0   0.2        9.1    6.2   0.0    2.6  2  EF-hand_10  EF hand
       0.14   12.0   0.0       0.89    9.5   0.0    2.1  2  EF-hand_8   EF-hand domain pair
       0.23   11.0   0.6        7.4    6.3   0.0    3.0  3  EF-hand_5   EF hand


Domain annotation for each model (and alignments):
>> CH  Calponin homology (CH) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.1   0.1   3.1e-14   7.9e-11       4     108 ..      13     115 ..      10     116 .. 0.91
   2 !   42.1   0.0   3.2e-14   8.1e-11       6     105 ..     142     240 ..     138     243 .. 0.90
   3 ?   -3.2   0.0       3.6   9.2e+03       3      22 ..     276     295 ..     275     303 .. 0.70
   4 ?   -3.3   0.0       4.1     1e+04       3      21 ..     406     424 ..     405     426 .. 0.82

  Alignments for each domain:
  == domain 1  score: 42.1 bits;  conditional E-value: 3.1e-14
                 HHHHHHHHHHHHTTSTTSSTTSCHHHHHTTSHHHHHHHHHH.STTTSSGGGSTTTHHHHHHHHHHHHHHHHHHTTCHTTSS-HHHHHTTSHHHHHHHHH CS
          CH   4 kkellrWinshleeagpkvkvedfeedlrDGvlLckLlnkl.apglvdkkklnksefkkleNinlaldvaekklgvpkvlieaedlvegknksvltlla 101
                  ++++rW ns l e  ++  ++d+ ed++ Gvl   L++ l +  + ++ + +++ f+kl+N++ +l  ++ +  +++v+i+aedl++g  k+vl+l +
  KOO21954.1  13 LQTFTRWWNSWLSE--RQLITTDLCEDIKLGVLPNVLIEILsRSPCARYIQAPRTTFQKLDNLQIFLRELR-EKSIKLVNIGAEDLASGYRKLVLGLTW 108
                 589*********87..56677********************85556699999999****************.*************************** PP

                 HHHHHHH CS
          CH 102 qLfrafq 108
                 +L++af+
  KOO21954.1 109 TLILAFE 115
                 ***9986 PP

  == domain 2  score: 42.1 bits;  conditional E-value: 3.2e-14
                 HHHHHHHHHHTTSTTSSTT..SCHHHHHTTSHHHHHHHHHHSTTTSSGGGSTTTHHHHHHHHHHHHHHHHHHTTCHTTSS-HHHHHT...TSHHHHHHH CS
          CH   6 ellrWinshleeagpkvkv..edfeedlrDGvlLckLlnklapglvdkkklnksefkkleNinlaldvaekklgvpkvlieaedlve...gknksvltl 99 
                 ell+W +++++    +v v     ++ + DG+++c+L++  +p ++d++    ++    e++++a+ +aek++gvp++l + +d      +++ks++ +
  KOO21954.1 142 ELLEWAKEKVKPH--GV-VleGGWQKGFTDGQAFCALVHDSEPTALDFEGS--KRLSPAERLMTAFAAAEKSMGVPQLL-DKSDFSLygkHDEKSIILY 234
                 89******99664..33.3359999***********************999..7*************************.****9989888889***** PP

                 HHHHHH CS
          CH 100 laqLfr 105
                 +a+L +
  KOO21954.1 235 VAKLKQ 240
                 **9975 PP

  == domain 3  score: -3.2 bits;  conditional E-value: 3.6
                 HHHHHHHHHHHHHTTSTTSS CS
          CH   3 qkkellrWinshleeagpkv 22 
                 +++ +l+W++ + ++  +++
  KOO21954.1 276 PRDSALQWLQHQPQSPLDSP 295
                 6778999*999877666555 PP

  == domain 4  score: -3.3 bits;  conditional E-value: 4.1
                 HHHHHHHHHHHHHTTSTTS CS
          CH   3 qkkellrWinshleeagpk 21 
                 q++e+l++++++le+a ++
  KOO21954.1 406 QEDEFLTFFKAMLESALNH 424
                 7899999999999988766 PP

>> EF-hand_7  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.7   0.0      0.14   3.5e+02      10      30 ..     183     204 ..     182     283 .. 0.81
   2 !   25.6   0.0   4.8e-09   1.2e-05       5      71 .]     350     415 ..     347     415 .. 0.85

  Alignments for each domain:
  == domain 1  score: 1.7 bits;  conditional E-value: 0.14
   EF-hand_7  10 elDtdgdgyldkee.llrllrk 30 
                 +lD  g+ +l+++e l+ ++ +
  KOO21954.1 183 ALDFEGSKRLSPAErLMTAFAA 204
                 58999*********77765543 PP

  == domain 2  score: 25.6 bits;  conditional E-value: 4.8e-09
   EF-hand_7   5 keaFkelDtdgdgyldkee.llrllrkifqgagegsklsdeelellfkefDtdkdGvisfdEFlklyr 71 
                 ke+F e D dg+g+++ +e + ++++   +  + + + s++e+++l++   +++dG++  dEFl++++
  KOO21954.1 350 KEVFAEADADGSGSMEITEaIASVHEMARAV-DLKLP-SPDEIRKLLDIGHKSRDGSLQEDEFLTFFK 415
                 899****************888877764332.55555.779***********************9985 PP

>> EF-hand_1  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.7   0.0   5.7e-05      0.15       3      21 ..     350     368 ..     348     376 .. 0.88
   2 !    5.6   0.1     0.005        13      12      29 .]     400     417 ..     399     417 .. 0.89

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 5.7e-05
                 HHHHHHHTTTSSSEEEHHH CS
   EF-hand_1   3 keiFrefDkDgdGkIdfeE 21 
                 ke+F+e+D Dg+G +++ E
  KOO21954.1 350 KEVFAEADADGSGSMEITE 368
                 89***********999887 PP

  == domain 2  score: 5.6 bits;  conditional E-value: 0.005
                 TSSSEEEHHHHHHHHHHH CS
   EF-hand_1  12 DgdGkIdfeEfkellkkl 29 
                  +dG +  +Ef++++k++
  KOO21954.1 400 SRDGSLQEDEFLTFFKAM 417
                 58*************975 PP

>> EF-hand_6  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.0       2.1   5.3e+03       8      21 ..     183     196 ..     182     196 .. 0.87
   2 !    6.9   0.0    0.0027       6.9       3      21 ..     350     368 ..     348     373 .. 0.87
   3 !    6.2   0.1    0.0044        11       4      27 ..     392     415 ..     389     422 .. 0.80

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 2.1
   EF-hand_6   8 lfDkdgdGkidaeE 21 
                 ++D++g+  ++++E
  KOO21954.1 183 ALDFEGSKRLSPAE 196
                 68******999887 PP

  == domain 2  score: 6.9 bits;  conditional E-value: 0.0027
   EF-hand_6   3 reaFklfDkdgdGkidaeE 21 
                 +e+F + D dg+G+  + E
  KOO21954.1 350 KEVFAEADADGSGSMEITE 368
                 79***********998877 PP

  == domain 3  score: 6.2 bits;  conditional E-value: 0.0044
   EF-hand_6   4 eaFklfDkdgdGkidaeElrkalr 27 
                 ++ ++  k++dG++  +E+  +++
  KOO21954.1 392 KLLDIGHKSRDGSLQEDEFLTFFK 415
                 555555689***********9998 PP

>> EF-hand_10  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.2   0.0    0.0036       9.1      21      42 ..     347     368 ..     343     371 .. 0.90
   2 ?    5.0   0.1    0.0087        22      32      49 ..     399     416 ..     391     417 .. 0.89

  Alignments for each domain:
  == domain 1  score: 6.2 bits;  conditional E-value: 0.0036
  EF-hand_10  21 eYAekLFkkcDkSksgrLegeE 42 
                  YA+++F ++D   sg++e  E
  KOO21954.1 347 AYAKEVFAEADADGSGSMEITE 368
                 5****************99776 PP

  == domain 2  score: 5.0 bits;  conditional E-value: 0.0087
  EF-hand_10  32 kSksgrLegeEieeFykl 49 
                 kS++g+L++ E+ +F+k 
  KOO21954.1 399 KSRDGSLQEDEFLTFFKA 416
                 8**************985 PP

>> EF-hand_8  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   0.0      0.49   1.3e+03      31      42 ..     352     363 ..     349     368 .. 0.86
   2 ?    9.5   0.0   0.00035      0.89       9      53 ..     375     415 ..     371     416 .. 0.80

  Alignments for each domain:
  == domain 1  score: -0.6 bits;  conditional E-value: 0.49
   EF-hand_8  31 lfrefDtdgdGk 42 
                 +f e+D dg+G 
  KOO21954.1 352 VFAEADADGSGS 363
                 6889******95 PP

  == domain 2  score: 9.5 bits;  conditional E-value: 0.00035
   EF-hand_8   9 elrrilrilglkkglseeevdilfrefDtdgdGkisfeEFcvlle 53 
                 e+ r++    lk   s++e++ l++ +   +dG +  +EF+ +++
  KOO21954.1 375 EMARAV---DLKL-PSPDEIRKLLDIGHKSRDGSLQEDEFLTFFK 415
                 444544...2332.7**************************9986 PP

>> EF-hand_5  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.0      0.78     2e+03       3       9 ..      65      71 ..      64      72 .. 0.85
   2 ?    6.3   0.0    0.0029       7.4       2      15 ..     350     363 ..     349     368 .. 0.87
   3 ?    1.4   0.1       0.1   2.6e+02      12      24 ..     401     413 ..     399     415 .. 0.88

  Alignments for each domain:
  == domain 1  score: -1.4 bits;  conditional E-value: 0.78
                HHHHHH- CS
   EF-hand_5  3 dtFqaiD 9 
                 tFq++D
  KOO21954.1 65 TTFQKLD 71
                59****9 PP

  == domain 2  score: 6.3 bits;  conditional E-value: 0.0029
                 HHHHHHH-SS-SSC CS
   EF-hand_5   2 kdtFqaiDlNgDGk 15 
                 k++F ++D++g+G 
  KOO21954.1 350 KEVFAEADADGSGS 363
                 569**********5 PP

  == domain 3  score: 1.4 bits;  conditional E-value: 0.1
                 -SSCE-HHHHHHH CS
   EF-hand_5  12 gDGkIskeELktl 24 
                 +DG +  +E+ t+
  KOO21954.1 401 RDGSLQEDEFLTF 413
                 8*********996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (507 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       552  (0.0307881); expected 358.6 (0.02)
Passed bias filter:                      442  (0.0246528); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.53u 0.25s 00:00:00.78 Elapsed: 00:00:00.42
# Mc/sec: 3651.16
//
Query:       KOO21955.1  [L=161]
Description: phytanoyl- dioxygenase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    9.4e-13   48.9   0.8    9.2e-12   45.7   0.8    1.9  1  PhyH      Phytanoyl-CoA dioxygenase (PhyH)


Domain annotation for each model (and alignments):
>> PhyH  Phytanoyl-CoA dioxygenase (PhyH)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.7   0.8   5.1e-16   9.2e-12      46     209 ..       5     143 ..       1     145 [. 0.85

  Alignments for each domain:
  == domain 1  score: 45.7 bits;  conditional E-value: 5.1e-16
                 EESTTCCCEECCCHHCHHHHTTHHHHHHHHHHHHTSCEEEEEEEEEEEEEEEE-TTTCB-EEEEE-SGGGST...EESGCCEEEEEEESS-B-TTBT-E CS
        PhyH  46 kaaadedglleksinkvghflhprkvadlvrailgqdvyvaavlqsmyqdifkqpkiGgevqpwHqDstflp...tdpeesvvgvwialedateenGcl 141
                 +a++ e+++  +++ + + ++h+ +++++vra+lg++ y      +         ++G+ +q+wH D ++l+   t+ ++++++v + l++ +++nG++
  KOO21955.1   5 RAHRWEHVHSPDDPPLAELAAHE-TLVPVVRALLGPKHYL----EKA---GLVVSHSGADAQRWHMDTPHLFacgTHLPPHSLSVFVPLCELHPANGPT 95 
                 67777888889999999*****9.**************95....233...3566778***************9754449******************** PP

                 EEETTGGGS-CCGTCCHHCSGCCTTSCCCTTTGHGSCEEEE.BTTTEEEEEETTSEEEE-TB.SSSXE CS
        PhyH 142 rfiPGSHkweegplrrrlpeddteaeddeakkedeeeavpvevkaGdavlfhgrllHgsgaNrsdksR 209
                  +   +H +++             +           ++  + + +G++v +++r++H++g+N+sd+ R
  KOO21955.1  96 EYQLATHMKANLV----------LKP----------RYALASCPPGSLVMYDPRIMHRGGPNQSDAER 143
                 *********6663..........222..........445678899********************998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (161 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       256  (0.0142785); expected 358.6 (0.02)
Passed bias filter:                      236  (0.013163); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.23s 00:00:00.63 Elapsed: 00:00:00.40
# Mc/sec: 1206.78
//
Query:       KOO21956.1  [L=352]
Description: methyltransferase type 12 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.6e-08   35.0   1.2    3.4e-08   34.0   0.2    2.0  2  Methyltransf_11  Methyltransferase domain
    3.5e-08   34.1   0.2    3.5e-08   34.1   0.2    2.2  2  Methyltransf_25  Methyltransferase domain
    5.6e-08   33.4   0.0    1.5e-07   32.1   0.0    1.8  1  Methyltransf_12  Methyltransferase domain
    4.8e-06   26.4   0.0    8.8e-06   25.6   0.0    1.5  1  Methyltransf_31  Methyltransferase domain
    0.00021   21.1   0.0    0.00033   20.5   0.0    1.4  1  Methyltransf_23  Methyltransferase domain
     0.0099   15.4   0.2      0.045   13.3   0.2    2.1  1  MTS              Methyltransferase small domain
  ------ inclusion threshold ------
      0.027   14.4   0.3      0.051   13.6   0.3    1.4  1  FlxA             FlxA-like protein
       0.14   11.5   0.0       0.22   10.9   0.0    1.2  1  Ubie_methyltran  ubiE/COQ5 methyltransferase family


Domain annotation for each model (and alignments):
>> Methyltransf_11  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.0       1.5   3.4e+03      48      69 ..      48      69 ..      23      97 .. 0.55
   2 !   34.0   0.2   1.5e-11   3.4e-08       1      96 []     178     274 ..     178     274 .. 0.94

  Alignments for each domain:
  == domain 1  score: -1.2 bits;  conditional E-value: 1.5
                     TTEECCCTSS-TT-EEEEEEES CS
  Methyltransf_11 48 vvadaeklpfednsfDlvvsse 69
                     + + + kl + d+++ +v  + 
       KOO21956.1 48 LNQAIYKLELGDEYVAAVKERD 69
                     3344444444444444443333 PP

  == domain 2  score: 34.0 bits;  conditional E-value: 1.5e-11
                      EEET-TTSHHHHHHHHTT.SEEEEEES-HHHHHHHHHHCCHHT-EEEETTEECCC.T.SS-TT-EEEEEEES-CCC-CCHHHHHHHHHHHEEEE CS
  Methyltransf_11   1 LdvGcGtGrlaealakrg.arvvgvDlskemlklakekaseeglkvefvvadaek.l.pfednsfDlvvssevlhhvedpekalkeiaRvLkpg 91 
                      +d+GcGtG++  +l  ++ +r++g+Dls  mlk+a ++ ++ +   e+v +da + l ++  +s Dl+v   v  ++  +e  ++ +   L  g
       KOO21956.1 178 VDFGCGTGLMGVQLRVACcGRLIGCDLSRGMLKVAATRHKGVY--DELVASDAISfLrKLSPGSADLIVGCDVCVYLRSLEPMFAAAEAALCEG 269
                      599************7777****************99999999..789******96678*********************************** PP

                      EEEEE CS
  Methyltransf_11  92 Gllvi 96 
                      G+l++
       KOO21956.1 270 GVLAF 274
                      *9986 PP

>> Methyltransf_25  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.1       1.1   2.5e+03      17      55 ..      46      85 ..      33     122 .. 0.50
   2 !   34.1   0.2   1.5e-11   3.5e-08       2      97 .]     178     270 ..     177     270 .. 0.88

  Alignments for each domain:
  == domain 1  score: -0.8 bits;  conditional E-value: 1.1
                     CTSTSSEEEEEESSHHHHHHHHHHHHH..TTT.TEEEEESBC CS
  Methyltransf_25 17 krlgkakvtgvDiseemleaareraee..egl.nvefvqgda 55
                     ++l ++ ++ +++ +e+++a++er ++  +++  +++ +++a
       KOO21956.1 46 QKL-NQAIYKLELGDEYVAAVKERDAAtkSEAaAATL-VAEA 85
                     554.366666666677777777665552222222222.2222 PP

  == domain 2  score: 34.1 bits;  conditional E-value: 1.5e-11
                      EEET-TTSHHHHHHHCTSTSSEEEEEESSHHHHHHHHHHHHHTTTTEEEEESBCCGB..SSSTTTEEEEEEESTGGGSSHHHHHHHHHHHHHHE CS
  Methyltransf_25   2 LdlGcGtGrltlalakrlgkakvtgvDiseemleaareraeeeglnvefvqgdaedl..pfedgsfDlvvssgalhhlsdedlekalkeiarvL 93 
                      +d+GcGtG +  +l  ++  ++++g+D+s +ml+ a++r+  +g+  e+v  da ++  ++  gs Dl+v + +  +l    le +++ +  +L
       KOO21956.1 178 VDFGCGTGLMGVQLRVAC-CGRLIGCDLSRGMLKVAATRH--KGVYDELVASDAISFlrKLSPGSADLIVGCDVCVYLR--SLEPMFAAAEAAL 266
                      79*************999.79*******************..79999******96642347999*******87777766..7889999999999 PP

                      EEEE CS
  Methyltransf_25  94 kpgG 97 
                       +gG
       KOO21956.1 267 CEGG 270
                      9988 PP

>> Methyltransf_12  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.1   0.0   6.6e-11   1.5e-07       1      99 []     178     272 ..     178     272 .. 0.88

  Alignments for each domain:
  == domain 1  score: 32.1 bits;  conditional E-value: 6.6e-11
  Methyltransf_12   1 LeiGcGtGsllralleklpdieytgvDispsaiedakeklakrennnnnnvelealdlldldggssfDlvvasnvlhhlkdirevldnirklLk 94 
                      +++GcGtG +   l+ +    +++g+D+s+ +++ a+++++   +   + v  +a++ l + +++s Dl+v ++v+ +l+ ++ +++ + ++L 
       KOO21956.1 178 VDFGCGTGLMGVQLRVA-CCGRLIGCDLSRGMLKVAATRHKGVYD---ELVASDAISFLRKLSPGSADLIVGCDVCVYLRSLEPMFAAAEAALC 267
                      69*********999999.899999*********999999999997...45555666665566668***************************** PP

  Methyltransf_12  95 pgGrl 99 
                       gG+l
       KOO21956.1 268 EGGVL 272
                      ***87 PP

>> Methyltransf_31  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.6   0.0   3.9e-09   8.8e-06       4     113 ..     174     278 ..     171     318 .. 0.87

  Alignments for each domain:
  == domain 1  score: 25.6 bits;  conditional E-value: 3.9e-09
  Methyltransf_31   4 glrvlDlGCGtGeltfelaeelgpkaevvGiDiseeaielArenaqklgldnveFeqgdiee.leklledekfDlilsnevlnaladpdkilee 96 
                       +  +D GCGtG  + +l   +   ++++G D s  ++++A ++  k  +d  e+ ++d+ + l k l++ + Dli+  +v+ +l +++  +  
       KOO21956.1 174 RMAAVDFGCGTGLMGVQLR--VACCGRLIGCDLSRGMLKVAATR-HKGVYD--ELVASDAISfLRK-LSPGSADLIVGCDVCVYLRSLEPMFAA 261
                      57789**************..444699****************6.445566..999******7777.688************************ PP

  Methyltransf_31  97 iervlkpggilliedpr 113
                      +e +l++gg+l+ ++ +
       KOO21956.1 262 AEAALCEGGVLAFSTES 278
                      **********9987765 PP

>> Methyltransf_23  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.5   0.0   1.5e-07   0.00033      23     124 ..     174     281 ..     116     327 .. 0.78

  Alignments for each domain:
  == domain 1  score: 20.5 bits;  conditional E-value: 1.5e-07
  Methyltransf_23  23 ggrvLdiGcGtGillevlrengf.svtgvDlspeaveiaekakkaqkdqfdeqeaae........pqgkfdlIvlrevlehvpdppellrqiat 107
                      ++  +d+GcGtG +   lr   +  ++g Dls+ + + a    + +k  +de  a++        + g+ dlIv  +v+  +++++  ++ + +
       KOO21956.1 174 RMAAVDFGCGTGLMGVQLRVACCgRLIGCDLSRGMLKVA---ATRHKGVYDELVASDaisflrklSPGSADLIVGCDVCVYLRSLEPMFAAAEA 264
                      33789*******998888888889********9877765...77777777555555566677777888************************** PP

  Methyltransf_23 108 llkpgGylllseplasl 124
                       l +gG+l +s+  + l
       KOO21956.1 265 ALCEGGVLAFSTESCTL 281
                      ***********975555 PP

>> MTS  Methyltransferase small domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.3   0.2     2e-05     0.045      34     102 ..     176     244 ..     166     279 .. 0.66

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 2e-05
                 EEEEET-TTSHHHHHHHHHTTC.EEEEEESBHHHHHHHHHHHHHTTGC.EEEEE-STTTTSTTS-EEEEE CS
         MTS  34 kvlDlGcGaGvlgaalakespeaevtlvdvdarAlesakenleankle.vevvasdvleeveekkfdliv 102
                  ++D+GcG+G++g++l  ++   ++  +d +   l++a +  +    e v   a + l ++++++ dliv
  KOO21956.1 176 AAVDFGCGTGLMGVQLRVACCG-RLIGCDLSRGMLKVAATRHKGVYDElVASDAISFLRKLSPGSADLIV 244
                 589*************998877.68888999888888866544433333333333445566677777776 PP

>> FlxA  FlxA-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.3   2.3e-05     0.051       6      54 ..       5      52 ..       1      57 [. 0.75

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 2.3e-05
        FlxA  6 asssssssgsasqiasLqkQiknlqkqLkelsesdeltkeekkkqqqli 54
                  ++ +++   + i+  ++Q+++l +q+  l+   +++k +++k  q i
  KOO21956.1  5 PQATCTEDAAPDHISHVNEQLAQLREQIAALGVG-KESKRDRQKLNQAI 52
                4445556666789*********************.66666677777766 PP

>> Ubie_methyltran  ubiE/COQ5 methyltransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   9.6e-05      0.22      48      93 ..     174     217 ..     151     235 .. 0.83

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 9.6e-05
                      TTEEEEES-TT-HHHHHHHHHHHHHHEEEEEES-HHHHHHHHHHHH CS
  Ubie_methyltran  48 gakvlDvagGtgDlafklsdsvgekgkvvvlDinenmLkvgekklk 93 
                         ++D  +Gtg + ++l   v   g+++++D++  mLkv+  + k
       KOO21956.1 174 RMAAVDFGCGTGLMGVQLR--VACCGRLIGCDLSRGMLKVAATRHK 217
                      55789*******9999985..77899**************998865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (352 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1017  (0.0567237); expected 358.6 (0.02)
Passed bias filter:                      562  (0.0313459); expected 358.6 (0.02)
Passed Vit filter:                        72  (0.00401584); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.54u 0.27s 00:00:00.81 Elapsed: 00:00:00.43
# Mc/sec: 2463.45
//
Query:       KOO21957.1  [L=347]
Description: hypothetical protein Ctob_000723 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (347 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       298  (0.0166211); expected 358.6 (0.02)
Passed bias filter:                      269  (0.0150036); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.46u 0.25s 00:00:00.71 Elapsed: 00:00:00.41
# Mc/sec: 2512.16
//
Query:       KOO21958.1  [L=1296]
Description: hypothetical protein Ctob_000724, partial [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    7.3e-18   64.9   0.0    2.7e-15   56.5   0.0    2.7  2  SHR-BD      SHR-binding domain of vacuolar-sorting associated
    7.6e-05   22.6   0.0    0.00015   21.6   0.0    1.4  1  VPS13_C     Vacuolar-sorting-associated 13 protein C-terminal


Domain annotation for each model (and alignments):
>> SHR-BD  SHR-binding domain of vacuolar-sorting associated protein 13
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.3   0.0    0.0012        11       3      27 ..     310     334 ..     308     349 .. 0.85
   2 !   56.5   0.0     3e-19   2.7e-15      67     269 ..     605     825 ..     582     827 .. 0.84

  Alignments for each domain:
  == domain 1  score: 5.3 bits;  conditional E-value: 0.0012
      SHR-BD   3 isIyapywllNkTglpLevrqedns 27 
                 +++ ap w+lN+++lpL +++++ s
  KOO21958.1 310 LQLDAPLWILNQSQLPLLYSTSSAS 334
                 56679**************998765 PP

  == domain 2  score: 56.5 bits;  conditional E-value: 3e-19
      SHR-BD  67 k..wskpfsldaigetnevelrsaekesevy.iGisveegrgkykltkiVtiaPRyilkNklsekleiaqrgskkv.......ielkpgeliplhwlrn 155
                 k  wskp+s + +ge+++  +        v+ +Gisv  +++   +++iV + PR  l N++ ++l ++++g +         +e kpg ++p+hw + 
  KOO21958.1 605 KhrWSKPLSCEIVGEHTQRDV-------GVFeVGISVLAAPDVCPRSRIVLLHPRVRLVNRTGIDLMYRSKGGDLGgtltpglEEGKPGPSVPFHWRDT 696
                 145********9999987663.......3444****************************************953334455558*************** PP

      SHR-BD 156 keekelv.irlpesnsq.......................wSggfnisdvgslyvklrrqnseqvllkveiiledatifikiedaeknewPfsirNese 230
                 ++++ l  + +p+  +q                       w g+f+i+   +l+v +  +n+   l++v +  ++a++++ +  a++   P+++ N+ +
  KOO21958.1 697 PADSRLLqLAIPSDTNQrstsvtsgasplirrrsdgggfeWCGAFSIDTPTELVVAIPGRNGVPWLVQVMVEAVQASLVVCFDLATAA--PYRLCNDCH 793
                 *997766555555433334556666667777777777777*********************************************999..*******99 PP

      SHR-BD 231 ve.ilfyqrdpelnsdeskplkytlppksvmpYawDePta 269
                    ++f q+    +     +l yt+ p++ + Y+wDePt+
  KOO21958.1 794 ALtLTFRQK----G----SELVYTVAPRQTLDYTWDEPTG 825
                 888***999....3....459*****************97 PP

>> VPS13_C  Vacuolar-sorting-associated 13 protein C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.6   0.0   1.6e-08   0.00015       3     100 ..    1104    1189 ..    1102    1190 .. 0.87

  Alignments for each domain:
  == domain 1  score: 21.6 bits;  conditional E-value: 1.6e-08
     VPS13_C    3 YfeklhlqPiklhlsfslsekknkeeslekeqsllslllllnslgvtltniddapikLnalelenvflslesliekikkhYsqqllkqlykilgsld 99  
                  Y+++l l+ i+l+l++ + + + +++++       s +         + n++d +++++a+el+++f ++++l++ + khY  ++ +ql +i++  d
  KOO21958.1 1104 YIDSLLLHSISLQLTYRRLPGAAEHSAS-------SGI-----PWHLIPNVSDLSMQFRAYELSQSFFERHRLLKGMRKHYMGEARRQLLRIVLKTD 1188
                  9999999999999999999999887632.......222.....345789********************************************9988 PP

     VPS13_C  100 v 100 
                  v
  KOO21958.1 1189 V 1189
                  6 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1296 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       680  (0.0379274); expected 358.6 (0.02)
Passed bias filter:                      444  (0.0247643); expected 358.6 (0.02)
Passed Vit filter:                        52  (0.00290033); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.87u 0.26s 00:00:01.12 Elapsed: 00:00:00.45
# Mc/sec: 8631.49
//
Query:       KOO21959.1  [L=914]
Description: aminopeptidase n [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
   1.4e-108  363.1   3.0   2.2e-108  362.4   3.0    1.3  1  DUF3458_C       Domain of unknown function (DUF3458_C) ARM re
    4.7e-50  170.2   0.1    8.6e-50  169.3   0.1    1.4  1  Peptidase_M1    Peptidase family M1 domain
    3.4e-32  110.8   0.1    8.7e-32  109.4   0.1    1.8  1  DUF3458         Domain of unknown function (DUF3458) Ig-like 
      7e-14   52.4   0.0    1.2e-13   51.6   0.0    1.4  1  Peptidase_M1_N  Peptidase M1 N-terminal domain
  ------ inclusion threshold ------
      0.071   13.5   0.1       0.23   11.9   0.1    2.0  1  Peptidase_M61   M61 glycyl aminopeptidase


Domain annotation for each model (and alignments):
>> DUF3458_C  Domain of unknown function (DUF3458_C) ARM repeats
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  362.4   3.0  6.2e-112  2.2e-108       2     318 ..     581     912 ..     580     913 .. 0.97

  Alignments for each domain:
  == domain 1  score: 362.4 bits;  conditional E-value: 6.2e-112
                 HHHHHHHHH-SSHHHHHHHHHHHHHHHHHHHHH...........TT----HHHHHHHHHHHT-TTS-HHHHHHHTS---HHHHCTT-SSB-HHHHHHHH CS
   DUF3458_C   2 eelafLlahdsDafnRweagqrLalrvllalva...........eeaalsealvealravLedealdpalkaeaLtlPseaelaeqlkevdpdaihaar 89 
                 + l +L+ahd+DafnRw+a+q+La+rv+l l++           ++++++e +++a+ra+L  + l+p+l+a+aLtlP+ + la++++++dpda+  + 
  KOO21959.1 581 ATLELLAAHDDDAFNRWDASQQLASRVILSLITqwqkapdsaarDALKVPEPFIKAFRATLVANGLEPSLQAYALTLPDYSVLAQEMAPIDPDALVGVL 679
                 67889***************************556677888899999**************************************************** PP

                 HHHHHHHHHHTHHHHHHHHHHHHHHC..--SHHHHHHHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHSSSHHHHHHHHHHHTTSSSHHHHHHHHHHHH CS
   DUF3458_C  90 ealrkalaealedellalyealaaeg..ayspdaaaagrRaLknlaLsylaaaddeeaaelavaqfkaadnmTdrlaALaalvnsdlpereealadfyq 186
                 + +r++la +l++e++a+y+ala+++  ++++ a+a+grR+L+n++L+yla  +de++ +l +a++k+a++mTd laAL+a+    +++r+e+ ++fy+
  KOO21959.1 680 RLVRRSLAIQLRTEFSAAYTALAPPKgeKFTVAAEAVGRRRLRNVCLEYLAMIGDEKSIALSLAHYKDATTMTDYLAALKAVDPYPGAARDEVSSTFYA 778
                 ***********************998889999***************************9999************************************ PP

                 HCTT..SHHHHHHHHHHHHH--STTHHHHHHHHHTSTTTTTTSHHHHHHHHHHHH.T-HHHHT-TTSHHHHHHHHHHHHHHTT-HHHHHHHGGGGTTGG CS
   DUF3458_C 187 rwkd..ealvldkWfalqAtspredtlervkallehpaFdlknPNrvrsLigaFaaanpaaFhaadGsGYafladqvleldaiNpqvAaRlvtaltrwr 283
                 r kd  ealv++kWfa+qA++ ++d+l+rvkal+ h+a+d +nPNrvrsL+  Fa+anpa Fh+ dGsGY+f++ qvle+ ++N qvAaRl+++++ w+
  KOO21959.1 779 RAKDnkEALVINKWFAVQASTFAPDALQRVKALMMHEAYDSTNPNRVRSLVSMFANANPAGFHSLDGSGYEFIGSQVLEIGQRNSQVAARLCSVFSAWK 877
                 99873368******************************************************************************************* PP

                 GB-HHHHHHHHHHHHHHHTSTT--HHHHHHHHHHH CS
   DUF3458_C 284 rydekrqalmkaaLeriaaaeelSkdvrEivskal 318
                 +yd+ rq lmka+L ri++++++Skdv+Ei+s+++
  KOO21959.1 878 KYDAVRQGLMKAQLVRIRDTPGVSKDVFEIASRSI 912
                 ********************************986 PP

>> Peptidase_M1  Peptidase family M1 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  169.3   0.1   2.4e-53   8.6e-50       1     218 []     264     478 ..     264     479 .. 0.95

  Alignments for each domain:
  == domain 1  score: 169.3 bits;  conditional E-value: 2.4e-53
                   HHHHHHHHHHHHHHHHHTS--SSSEEEEEEESSTTSSEEEETTEEEEEGGGC-SSTTTS-HHHHHHHHHHHHHHHHHHHBTTTEEESSGGGGHHHHH CS
  Peptidase_M1   1 yalevtkkllefleeyfkvpYplpkldlvalpdfsagAMEnwglityreelllvdpenssesdkrsvaeviaHElaHqWfGnlVtmkwWddlwLnEG 97 
                   +a+   k ++++ e+ ++ +Y+l+  ++va++df++gAMEn+gl +++ +++l++p++++++d ++v+ v+ HE++H+W+Gn Vt++ W +l L+EG
    KOO21959.1 264 WAMTSLKDAMRWDERVYGREYDLDVFHIVAVNDFNMGAMENKGLNVFNTSCVLAKPSAATDADFERVQGVVGHEYFHNWTGNRVTCRDWFQLTLKEG 360
                   78999999***************************************************************************************** PP

                   HHHHHHHHHHHHHSC.CCHCHHHHHHHCHHHHHHHHTSTTHHHSSGG-GSHHHHHHTSSHHHHHHHHHHHHHHHHHCTHHHHHHHHHHHHHHCTTEE CS
  Peptidase_M1  98 fatyleylildklep.ewevseqllleeveealsedaldeshpitqevekpseidevFdsiaYeKGasllrmlekllgeevFqkglksYlkefkykn 193
                   ++++ ++ ++ ++ +  ++  e++   ++ +++ eda  ++hpi  + e+   id++++ ++YeKG++++rm ++llg + F+kg+  Y+++++ ++
    KOO21959.1 361 LTVFRDSGFSADMTSaAVKRIEDV-RVMRAHQFVEDAGPMAHPI--RPESYLAIDNFYTVTVYEKGSEVIRMYHTLLGAAGFRKGMDLYFERHDGQA 454
                   ********9999999666667777.667778999**********..6889999******************************************** PP

                   E-HHHHHHHHHHCCCSCHHTHHHHH CS
  Peptidase_M1 194 aetedlwdaleealnkdisevmdtw 218
                   ++++d+  a+ +a++ d++++ ++w
    KOO21959.1 455 VTCDDFRAAMADANGRDLTQF-ERW 478
                   ******************999.555 PP

>> DUF3458  Domain of unknown function (DUF3458) Ig-like fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  109.4   0.1   2.4e-35   8.7e-32       1      94 [.     483     576 ..     483     577 .. 0.98

  Alignments for each domain:
  == domain 1  score: 109.4 bits;  conditional E-value: 2.4e-35
                 S--EEEEEEEEETTTTEEEEEEEEE---BSSBSS-----EEEEEEEEETTS-BECEEEEEEE-SSEEEEEEC---S-EEEEESTT--SSSEEE- CS
     DUF3458   1 GtPevtvsesydeaaktytltlsQktpptagqkekkplviPiklalldekGeelelekvlelteaeqsftfenvaekpvpSllrdFSAPvkley 94 
                 GtP+v++   yd+ +k+y+ltlsQ+tp+t+gq++k p++iP+k++llde+G+ l  e+vleltea+q+ftf+ ++++pv+Sllr+FSAPvk+++
  KOO21959.1 483 GTPTVKAVGVYDAPKKSYSLTLSQSTPATPGQPTKLPFHIPVKIKLLDEQGKCLLDERVLELTEASQTFTFDAIPSAPVLSLLRGFSAPVKVDM 576
                 9*****************************************************99***********************************986 PP

>> Peptidase_M1_N  Peptidase M1 N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.6   0.0   3.4e-17   1.2e-13      83     186 .]     126     225 ..      86     225 .. 0.84

  Alignments for each domain:
  == domain 1  score: 51.6 bits;  conditional E-value: 3.4e-17
                     TCEEEEEEEEEEE-..BSSSSEEEEEEEEETSCEEEEEEEE-TTTTGGGTS-B--STTSEBEEEEEEEEETTS..EEEESSECCCEEEETTCEEE CS
  Peptidase_M1_N  83 tskytLeieyegel..ndklaGlykstYtdkgekkvvvvTqfeatdARsafPCfDePsvKAtftisikapkee..talSnmpeeeseklengqki 173
                     t+++ L+i   ++   n++l Glyk++    g     ++Tq+ea  +R++++ +D+P+v +++t++++a+ke   ++lSn++e ++ +l+ g+++
      KOO21959.1 126 TTSFDLSIVVATKPqdNTQLSGLYKTS----G----NYCTQCEAVGFRRITYFLDRPDVMSKYTVRVEADKELhpVLLSNGNETARGELAGGRHW 212
                     555666666666655577889999955....3....47**********************************999******************** PP

                     EEEEEEESBEGGG CS
  Peptidase_M1_N 174 teFeqtpkmstYL 186
                      +Fe+ +k++ YL
      KOO21959.1 213 ATFEDPFKKPCYL 225
                     ************8 PP

>> Peptidase_M61  M61 glycyl aminopeptidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.1   6.3e-05      0.23       3      26 ..     331     354 ..     329     426 .. 0.90

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 6.3e-05
                    HHHHHHHHHHTTBTTTB-BGGGSS CS
  Peptidase_M61   3 lgllaHEyfHsWnvkrirPaelep 26 
                     g++ HEyfH W ++r+  ++  +
     KOO21959.1 331 QGVVGHEYFHNWTGNRVTCRDWFQ 354
                    57899**********998777655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (914 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       475  (0.0264934); expected 358.6 (0.02)
Passed bias filter:                      420  (0.0234257); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.67u 0.28s 00:00:00.95 Elapsed: 00:00:00.45
# Mc/sec: 6129.81
//
Query:       KOO21960.1  [L=1014]
Description: potassium voltage-gated channel subfamily h member 2 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.5e-15   57.1  10.5    9.6e-09   34.8   1.6    2.1  2  Ion_trans     Ion transport protein
    6.1e-11   42.1   0.9    6.1e-11   42.1   0.9    2.3  2  Ion_trans_2   Ion channel
  ------ inclusion threshold ------
      0.026   14.6   0.0        1.4    9.0   0.0    2.7  2  cNMP_binding  Cyclic nucleotide-binding domain
       0.24   10.4   0.0       0.39    9.7   0.0    1.2  1  ChAPs         ChAPs (Chs5p-Arf1p-binding proteins)


Domain annotation for each model (and alignments):
>> Ion_trans  Ion transport protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.8   1.6   2.1e-12   9.6e-09       2      81 ..     269     356 ..     268     358 .. 0.94
   2 !   27.2   1.9   4.6e-10   2.1e-06     126     237 ..     364     467 ..     359     472 .. 0.77

  Alignments for each domain:
  == domain 1  score: 34.8 bits;  conditional E-value: 2.1e-12
                 HHHHHHHHHHHHHHHHHHHCCCSSSSHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHTH..........HHHHHHCHSHHHHHHHHHHHHH CS
   Ion_trans   2 svfelfilllillncvflaletyfpedelektileilelvftaiftlemllkilalgl..........likkrYlrdpwnilDflvvlps 81 
                 + ++l +l+li+++cv+++++      +++  + +++e ++t +f+++++l++ +++l          li+++Yl   w+++D+ + +p+
  KOO21960.1 269 QAWDLSMLVLIIYSCVVIPFRIGMSVPNPT-GVSQTIERCITLLFIVDLCLNFNTAYLdgshfivdrsLIARNYLMG-WFWIDLASSIPF 356
                 68******************8877777777.**********************************************.9******99987 PP

  == domain 2  score: 27.2 bits;  conditional E-value: 4.6e-10
                 HHHHHHHHHHHHHHHHHHHHHHH.HHHHTTSCCCCCCSCCSTSSSTTTSSSSSS.....HHHHHHHHHHHHTTSSHHHHHHHHHHHSHHHHHHHHHHHH CS
   Ion_trans 126 svkdllnvlllllvvlfifalig.vqlfkgklreknecaktwenpnngntnFdn.....fftallwlfrlmttegwgdilyatldekskvaliyfvifi 218
                 ++k++  +l+l+++++++++ ++ +  ++g+l       +tw    +g +  +      ++ +++w++ ++tt+g+gdi++a+ +e+          ++
  KOO21960.1 364 ILKMVAMILYLMHILGCFWFFVAtNSGYEGTLE----AGDTWLARYDGGSGLTApletqYLFSIYWALMTLTTVGYGDITPANDSER----------LY 448
                 578999999999999999999995666666666....2333333333333322234444****************************..........99 PP

                 HHHHHHHHHHHHHHHHHHH CS
   Ion_trans 219 ilgsflllNlliaviadnf 237
                  lgs+ll +l+++++ +++
  KOO21960.1 449 ALGSLLLGALVFGFMLSSI 467
                 9999999999999999886 PP

>> Ion_trans_2  Ion channel
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.9      0.35   1.6e+03       7      35 ..     366     387 ..     359     390 .. 0.57
   2 !   42.1   0.9   1.4e-14   6.1e-11      24      75 ..     418     469 ..     403     472 .. 0.92

  Alignments for each domain:
  == domain 1  score: -0.8 bits;  conditional E-value: 0.35
                  CHHHHHHHHT....T---HHHHHHHHHHH CS
  Ion_trans_2   7 lifgaviysleegwekwsfldalYfsfvt 35 
                   ++++++y +        +l +++f++ t
   KOO21960.1 366 KMVAMILYLM-------HILGCFWFFVAT 387
                  3334444444.......777778877766 PP

  == domain 2  score: 42.1 bits;  conditional E-value: 1.4e-14
                  -HHHHHHHHHHHHTTS----SSTT-----HHHHHHHHHHHHHHHHHHHHHHH CS
  Ion_trans_2  24 sfldalYfsfvtltTiGYGdivpetdagrlftivyillGlalfalflavlgk 75 
                  ++l ++Y++++tltT+GYGdi+p +d  rl ++  +llG ++f++ l+ +g 
   KOO21960.1 418 QYLFSIYWALMTLTTVGYGDITPANDSERLYALGSLLLGALVFGFMLSSIGG 469
                  67789******************************************99985 PP

>> cNMP_binding  Cyclic nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.0   0.0   0.00031       1.4       5      31 ..     582     608 ..     578     659 .. 0.81
   2 ?    2.7   0.0     0.031   1.4e+02      41      87 ..     673     718 ..     660     720 .. 0.82

  Alignments for each domain:
  == domain 1  score: 9.0 bits;  conditional E-value: 0.00031
                   -TT-EEE-TTSB-SEEEEEEES-EEEE CS
  cNMP_binding   5 kagevifrqGdpadslyivlsGevrvy 31 
                   +a e+i+ +Gd+   l +v++G+v  y
    KOO21960.1 582 EAKEIIISRGDALSDLTFVHKGTVHAY 608
                   689*********************998 PP

  == domain 2  score: 2.7 bits;  conditional E-value: 0.031
                   EEEEE-TTEEESHHHHHHTS--SSEEEESSTEEEEEEEHHHHHHHHH CS
  cNMP_binding  41 vlavlgpGdlfGelalltgeprtatvvAltdsellalprddflellq 87 
                   +l+    G+l+ e al + +p +    A+ ++el+ + r+d+l++l+
    KOO21960.1 673 LLTLAETGALLSEGALTE-TPTKMAYMAVLRTELVLMARSDLLKVLD 718
                   566678899999977766.99999999999*************9997 PP

>> ChAPs  ChAPs (Chs5p-Arf1p-binding proteins)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   0.0   8.6e-05      0.39     189     241 ..     733     786 ..     723     813 .. 0.76

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 8.6e-05
                 HHHHHHHHTT-GGGHHHHHHHHHHTT-HHHHHHHHHHHH-SSS-H.HHHHHHHH CS
       ChAPs 189 lellekLkeeepevvillarvllladeEvdavkllneeleeeekd.aelLllqa 241
                 +e+le+Lk ++      + + ++++deEv+av+l ++e +++     +lL++ a
  KOO21960.1 733 AEMLERLKMTYFSLRFQVREAYVICDEEVRAVRLAYRENSSNYVAsFNLLQMGA 786
                 58*********************************9998766544356665443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1014 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       707  (0.0394333); expected 358.6 (0.02)
Passed bias filter:                      496  (0.0276647); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.72u 0.25s 00:00:00.97 Elapsed: 00:00:00.41
# Mc/sec: 7456.04
//
Query:       KOO21961.1  [L=864]
Description: ig-like domain-containing surface protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
   5.4e-199  650.4   0.0    2.4e-37  127.7   0.0    5.6  6  LRR_5       BspA type Leucine rich repeat region (6 copies)
    2.7e-32  110.3   0.0      0.027   14.2   0.0   12.9 18  LRR_8       Leucine rich repeat
  ------ inclusion threshold ------
        5.9    7.5  43.5    1.2e+02    3.3  10.0    6.0  3  Forkhead_N  Forkhead N-terminal region


Domain annotation for each model (and alignments):
>> LRR_5  BspA type Leucine rich repeat region (6 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  101.2   0.0   6.8e-33     4e-29       5     111 ..     340     448 ..     336     450 .. 0.96
   2 !  119.2   0.0   1.8e-38   1.1e-34       2     128 .]     429     557 ..     428     557 .. 0.98
   3 !  124.0   0.0   5.7e-40   3.4e-36       4     126 ..     523     647 ..     522     648 .. 0.98
   4 !  127.7   0.0   4.1e-41   2.4e-37       2     125 ..     613     738 ..     612     739 .. 0.99
   5 !  103.0   0.0   1.8e-33   1.1e-29       3     103 ..     683     784 ..     682     784 .. 0.93
   6 !  109.6   0.0   1.6e-35   9.8e-32       1     113 [.     727     841 ..     727     848 .. 0.98

  Alignments for each domain:
  == domain 1  score: 101.2 bits;  conditional E-value: 6.8e-33
       LRR_5   5 syaFync.nltsitipssvtsIgeyaFsnctslksitlpsslteigsyaFsncssltsitipssltsigeyaFsncsslkeitlpsnlttigssaFsnc 102
                   aF++  ++tsi +p  +tsIg +aF++c+sl+si+lp +lt++g++aF +css+tsi++p  lts+g  aF+ cssl++i lp  l +ig+  F++c
  KOO21961.1 340 PGAFRDDtSMTSIAMPAGLTSIGRSAFRGCSSLTSIELPAGLTSLGEHAFRGCSSMTSIELPAGLTSLGGFAFARCSSLTSIALPAGLMSIGECTFYGC 438
                 67999977******************************************************************************************* PP

       LRR_5 103 .slesitips 111
                  s++si +p+
  KOO21961.1 439 sSMTSIALPA 448
                 9*****9997 PP

  == domain 2  score: 119.2 bits;  conditional E-value: 1.8e-38
       LRR_5   2 eIgsyaFync.nltsitipssvtsIgeyaFsnctslksitlpsslteigsyaFsncssltsitipssltsigeyaFsncsslkeitlpsnlttigssaF 99 
                 +Ig+ +Fy+c ++tsi +p  + sIge+aFs+c+s++si+lp +l +++  aF++css+tsi++p  lts+ge+aF++cs ++ i+lp  lt +++saF
  KOO21961.1 429 SIGECTFYGCsSMTSIALPAGLMSIGEHAFSGCSSMTSIELPAGLMSLDWGAFDGCSSMTSIELPAGLTSLGEHAFAHCSAMTLIELPAGLTGLSESAF 527
                 79************************************************************************************************* PP

       LRR_5 100 snc.slesitipssvtkigsnaFsncsslk 128
                 ++c  l+si++p+ +t++g++aF +cssl+
  KOO21961.1 528 EGCsLLTSIELPAGLTSLGEHAFRGCSSLT 557
                 ***889********************9986 PP

  == domain 3  score: 124.0 bits;  conditional E-value: 5.7e-40
       LRR_5   4 gsyaFync.nltsitipssvtsIgeyaFsnctslksitlpsslteigsyaFsncssltsitipssltsigeyaFsncsslkeitlpsnlttigssaFsn 101
                 +++aF++c  ltsi++p  +ts+ge+aF++c+sl+ i+lp +lt+ig+  F +css+tsi++p  lt++g +aF++css+++i+lp  l +ig saF++
  KOO21961.1 523 SESAFEGCsLLTSIELPAGLTSLGEHAFRGCSSLTLIELPAGLTSIGEGTFRGCSSMTSIELPVCLTNLGLHAFQGCSSMTSIKLPAGLMSIGRSAFYG 621
                 689*****99***************************************************************************************** PP

       LRR_5 102 c.slesitipssvtkigsnaFsncss 126
                 c s++si +p+ +t+i+++aF++css
  KOO21961.1 622 CsSMTSIALPAGLTSISESAFYGCSS 647
                 *9**********************76 PP

  == domain 4  score: 127.7 bits;  conditional E-value: 4.1e-41
       LRR_5   2 eIgsyaFync.nltsitipssvtsIgeyaFsnctslksitlpsslteigsyaFsncssltsitipssltsigeyaFsncsslkeitlpsnlttigssaF 99 
                 +Ig++aFy+c ++tsi +p  +tsI+e+aF++c+s+ s+ lp +l +i+  aF++csslts+ +p  l si+  aF++cssl+++ lp  lt+ig++aF
  KOO21961.1 613 SIGRSAFYGCsSMTSIALPAGLTSISESAFYGCSSMASVALPAGLMSIDWGAFYGCSSLTSVALPAGLMSIDWGAFYGCSSLTSVALPAGLTSIGEHAF 711
                 79************************************************************************************************* PP

       LRR_5 100 snc.slesitipssvtkigsnaFsncs 125
                  +c s++si++p+ +t+i+++aF++cs
  KOO21961.1 712 HGCsSMTSIELPAGLTSISESAFYGCS 738
                 ***9**********************6 PP

  == domain 5  score: 103.0 bits;  conditional E-value: 1.8e-33
       LRR_5   3 IgsyaFync.nltsitipssvtsIgeyaFsnctslksitlpsslteigsyaFsncssltsitipssltsigeyaFsncsslkeitlpsnlttigssaFs 100
                 I+  aFy+c +lts+ +p  +tsIge+aF++c+s++si+lp +lt+i+++aF++css+tsi++p  l si+  aF++cssl++i lp  lt++g +aF 
  KOO21961.1 683 IDWGAFYGCsSLTSVALPAGLTSIGEHAFHGCSSMTSIELPAGLTSISESAFYGCSSMTSIELPAGLMSIDWGAFYGCSSLTSIALPVGLTSLGLHAFD 781
                 6678999*999*********************99*********************99******************************9******99999 PP

       LRR_5 101 ncs 103
                 +cs
  KOO21961.1 782 GCS 784
                 995 PP

  == domain 6  score: 109.6 bits;  conditional E-value: 1.6e-35
       LRR_5   1 teIgsyaFync.nltsitipssvtsIgeyaFsnctslksitlpsslteigsyaFsncssltsitipssltsigeyaFsncsslkeitlpsnlttigssa 98 
                 t+I+++aFy+c ++tsi++p  + sI+  aF++c+sl+si lp +lt++g +aF++css+tsi +p  l sige +Fs+css+++i+lp  l+++g  a
  KOO21961.1 727 TSISESAFYGCsSMTSIELPAGLMSIDWGAFYGCSSLTSIALPVGLTSLGLHAFDGCSSMTSIALPAGLMSIGEGTFSGCSSMTSIELPAGLKSLGGGA 825
                 79************************************************************************************************* PP

       LRR_5  99 Fsnc.slesitipssv 113
                 F++c sl+si +p+ +
  KOO21961.1 826 FYGCsSLTSIALPAGF 841
                 ***********99876 PP

>> LRR_8  Leucine rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.0      0.77   4.6e+03      48      58 ..     239     249 ..     237     253 .. 0.58
   2 !   14.2   0.0   4.6e-06     0.027      13      56 ..     358     400 ..     356     403 .. 0.95
   3 ?    1.2   0.0     0.053   3.2e+02      13      32 ..     404     423 ..     401     448 .. 0.76
   4 ?    3.0   0.0     0.014        85      16      56 ..     430     469 ..     416     471 .. 0.71
   5 !    7.3   0.0   0.00066       3.9      14      56 ..     451     492 ..     447     495 .. 0.89
   6 !    6.9   0.0   0.00086       5.1      14      56 ..     474     515 ..     471     518 .. 0.90
   7 !    8.7   0.0   0.00024       1.4      13      56 ..     496     538 ..     494     540 .. 0.94
   8 !   12.7   0.0   1.4e-05     0.081      13      56 ..     519     561 ..     516     564 .. 0.95
   9 !   12.6   0.0   1.5e-05     0.089      13      56 ..     542     584 ..     539     588 .. 0.95
  10 !    9.9   0.0   9.9e-05      0.59      13      56 ..     565     607 ..     563     609 .. 0.93
  11 !    4.0   0.0    0.0072        43      15      51 ..     613     648 ..     609     654 .. 0.83
  12 !    5.1   0.0    0.0032        19      13      53 ..     634     673 ..     632     678 .. 0.78
  13 !    7.5   0.0   0.00055       3.3      14      53 ..     658     696 ..     655     701 .. 0.86
  14 !   10.4   0.0   6.9e-05      0.41      14      56 ..     681     722 ..     677     724 .. 0.93
  15 !   11.9   0.0   2.4e-05      0.14      13      56 ..     703     745 ..     701     748 .. 0.95
  16 !   11.6   0.0     3e-05      0.18      13      56 ..     726     768 ..     724     769 .. 0.92
  17 !    8.9   0.0   0.00021       1.3      14      56 ..     750     791 ..     747     793 .. 0.90
  18 !    9.4   0.0   0.00014      0.85      14      56 ..     796     837 ..     793     839 .. 0.91

  Alignments for each domain:
  == domain 1  score: -2.5 bits;  conditional E-value: 0.77
                 --S-.EEE--S CS
       LRR_8  48 LpsLrsLdLsg 58 
                 L  +++LdLs+
  KOO21961.1 239 LVEVTELDLSD 249
                 55555666654 PP

  == domain 2  score: 14.2 bits;  conditional E-value: 4.6e-06
                 -SEE-TTSSTT-TT--EEE--SS---GGGGGGGTT--S-.EEE- CS
       LRR_8  13 ltslddeaFkglsnLkvLdLsnNllttlspgafsgLpsLrsLdL 56 
                 lts++ +aF+g+s+L++++L    lt+l ++af+g++s +s+ L
  KOO21961.1 358 LTSIGRSAFRGCSSLTSIELPAG-LTSLGEHAFRGCSSMTSIEL 400
                 89********************9.****************9988 PP

  == domain 3  score: 1.2 bits;  conditional E-value: 0.053
                 -SEE-TTSSTT-TT--EEE- CS
       LRR_8  13 ltslddeaFkglsnLkvLdL 32 
                 ltsl+  aF ++s+L+++ L
  KOO21961.1 404 LTSLGGFAFARCSSLTSIAL 423
                 78999999999999998877 PP

  == domain 4  score: 3.0 bits;  conditional E-value: 0.014
                 E-TTSSTT-TT--EEE--SS---GGGGGGGTT--S-.EEE- CS
       LRR_8  16 lddeaFkglsnLkvLdLsnNllttlspgafsgLpsLrsLdL 56 
                 ++  +F+g+s+++++ L    l ++ ++afsg++s +s+ L
  KOO21961.1 430 IGECTFYGCSSMTSIALPAG-LMSIGEHAFSGCSSMTSIEL 469
                 55556777777777777666.44566788888888888776 PP

  == domain 5  score: 7.3 bits;  conditional E-value: 0.00066
                 SEE-TTSSTT-TT--EEE--SS---GGGGGGGTT--S-.EEE- CS
       LRR_8  14 tslddeaFkglsnLkvLdLsnNllttlspgafsgLpsLrsLdL 56 
                  s++ +aF+g+s++++++L    l +l++gaf+g++s +s+ L
  KOO21961.1 451 MSIGEHAFSGCSSMTSIELPAG-LMSLDWGAFDGCSSMTSIEL 492
                 58999**************999.77888*********999987 PP

  == domain 6  score: 6.9 bits;  conditional E-value: 0.00086
                 SEE-TTSSTT-TT--EEE--SS---GGGGGGGTT--S-.EEE- CS
       LRR_8  14 tslddeaFkglsnLkvLdLsnNllttlspgafsgLpsLrsLdL 56 
                  sld++aF g+s++++++L    lt+l ++af+++++ + + L
  KOO21961.1 474 MSLDWGAFDGCSSMTSIELPAG-LTSLGEHAFAHCSAMTLIEL 515
                 58999**************999.9**********999998877 PP

  == domain 7  score: 8.7 bits;  conditional E-value: 0.00024
                 -SEE-TTSSTT-TT--EEE--SS---GGGGGGGTT--S-.EEE- CS
       LRR_8  13 ltslddeaFkglsnLkvLdLsnNllttlspgafsgLpsLrsLdL 56 
                 ltsl+ +aF ++s+++ ++L    lt ls+ af+g++ L+s+ L
  KOO21961.1 496 LTSLGEHAFAHCSAMTLIELPAG-LTGLSESAFEGCSLLTSIEL 538
                 899******************99.****************9988 PP

  == domain 8  score: 12.7 bits;  conditional E-value: 1.4e-05
                 -SEE-TTSSTT-TT--EEE--SS---GGGGGGGTT--S-.EEE- CS
       LRR_8  13 ltslddeaFkglsnLkvLdLsnNllttlspgafsgLpsLrsLdL 56 
                 lt+l+ +aF+g+s L++++L    lt+l ++af+g++sL+ + L
  KOO21961.1 519 LTGLSESAFEGCSLLTSIELPAG-LTSLGEHAFRGCSSLTLIEL 561
                 899******************99.****************9987 PP

  == domain 9  score: 12.6 bits;  conditional E-value: 1.5e-05
                 -SEE-TTSSTT-TT--EEE--SS---GGGGGGGTT--S-.EEE- CS
       LRR_8  13 ltslddeaFkglsnLkvLdLsnNllttlspgafsgLpsLrsLdL 56 
                 ltsl+ +aF+g+s+L+ ++L    lt++ +g+f+g++s +s+ L
  KOO21961.1 542 LTSLGEHAFRGCSSLTLIELPAG-LTSIGEGTFRGCSSMTSIEL 584
                 89*******************99.***************99988 PP

  == domain 10  score: 9.9 bits;  conditional E-value: 9.9e-05
                 -SEE-TTSSTT-TT--EEE--SS---GGGGGGGTT--S-.EEE- CS
       LRR_8  13 ltslddeaFkglsnLkvLdLsnNllttlspgafsgLpsLrsLdL 56 
                 lts++ ++F+g+s++++++L   +lt l  +af+g++s +s+ L
  KOO21961.1 565 LTSIGEGTFRGCSSMTSIELPV-CLTNLGLHAFQGCSSMTSIKL 607
                 89******************87.6***************99988 PP

  == domain 11  score: 4.0 bits;  conditional E-value: 0.0072
                 EE-TTSSTT-TT--EEE--SS---GGGGGGGTT--S- CS
       LRR_8  15 slddeaFkglsnLkvLdLsnNllttlspgafsgLpsL 51 
                 s++ +aF+g+s+++++ L    lt++s+ af g++s 
  KOO21961.1 613 SIGRSAFYGCSSMTSIALPAG-LTSISESAFYGCSSM 648
                 788999999999999999988.999999999998875 PP

  == domain 12  score: 5.1 bits;  conditional E-value: 0.0032
                 -SEE-TTSSTT-TT--EEE--SS---GGGGGGGTT--S-.E CS
       LRR_8  13 ltslddeaFkglsnLkvLdLsnNllttlspgafsgLpsLrs 53 
                 lts++ +aF+g+s++ +  L    l ++++gaf g++sL+s
  KOO21961.1 634 LTSISESAFYGCSSMASVALPAG-LMSIDWGAFYGCSSLTS 673
                 78888888888888888888888.66677888888888886 PP

  == domain 13  score: 7.5 bits;  conditional E-value: 0.00055
                 SEE-TTSSTT-TT--EEE--SS---GGGGGGGTT--S-.E CS
       LRR_8  14 tslddeaFkglsnLkvLdLsnNllttlspgafsgLpsLrs 53 
                  s+d++aF+g+s+L++  L    l ++++gaf g++sL+s
  KOO21961.1 658 MSIDWGAFYGCSSLTSVALPAG-LMSIDWGAFYGCSSLTS 696
                 58999************99999.77777999999999997 PP

  == domain 14  score: 10.4 bits;  conditional E-value: 6.9e-05
                 SEE-TTSSTT-TT--EEE--SS---GGGGGGGTT--S-.EEE- CS
       LRR_8  14 tslddeaFkglsnLkvLdLsnNllttlspgafsgLpsLrsLdL 56 
                  s+d++aF+g+s+L++  L    lt++ ++af+g++s +s+ L
  KOO21961.1 681 MSIDWGAFYGCSSLTSVALPAG-LTSIGEHAFHGCSSMTSIEL 722
                 589*****************99.***************99988 PP

  == domain 15  score: 11.9 bits;  conditional E-value: 2.4e-05
                 -SEE-TTSSTT-TT--EEE--SS---GGGGGGGTT--S-.EEE- CS
       LRR_8  13 ltslddeaFkglsnLkvLdLsnNllttlspgafsgLpsLrsLdL 56 
                 lts++ +aF+g+s++++++L    lt++s+ af g++s +s+ L
  KOO21961.1 703 LTSIGEHAFHGCSSMTSIELPAG-LTSISESAFYGCSSMTSIEL 745
                 89*******************99.****************9988 PP

  == domain 16  score: 11.6 bits;  conditional E-value: 3e-05
                 -SEE-TTSSTT-TT--EEE--SS---GGGGGGGTT--S-.EEE- CS
       LRR_8  13 ltslddeaFkglsnLkvLdLsnNllttlspgafsgLpsLrsLdL 56 
                 lts++ +aF+g+s++++++L    l ++++gaf g++sL+s+ L
  KOO21961.1 726 LTSISESAFYGCSSMTSIELPAG-LMSIDWGAFYGCSSLTSIAL 768
                 89********************9.77788***********9866 PP

  == domain 17  score: 8.9 bits;  conditional E-value: 0.00021
                 SEE-TTSSTT-TT--EEE--SS---GGGGGGGTT--S-.EEE- CS
       LRR_8  14 tslddeaFkglsnLkvLdLsnNllttlspgafsgLpsLrsLdL 56 
                  s+d++aF+g+s+L+++ L    lt+l  +af+g++s +s+ L
  KOO21961.1 750 MSIDWGAFYGCSSLTSIALPVG-LTSLGLHAFDGCSSMTSIAL 791
                 589****************999.999*********99998866 PP

  == domain 18  score: 9.4 bits;  conditional E-value: 0.00014
                 SEE-TTSSTT-TT--EEE--SS---GGGGGGGTT--S-.EEE- CS
       LRR_8  14 tslddeaFkglsnLkvLdLsnNllttlspgafsgLpsLrsLdL 56 
                  s++ ++F+g+s++++++L    l++l  gaf g++sL+s+ L
  KOO21961.1 796 MSIGEGTFSGCSSMTSIELPAG-LKSLGGGAFYGCSSLTSIAL 837
                 58999**************999.9**************99876 PP

>> Forkhead_N  Forkhead N-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6  12.8       1.3   7.6e+03      38      87 ..     393     452 ..     333     592 .. 0.63
   2 ?    3.3  10.0      0.02   1.2e+02      16      87 ..     600     682 ..     577     685 .. 0.69
   3 ?   -0.8  14.2      0.35   2.1e+03      15      91 ..     732     820 ..     646     836 .. 0.78

  Alignments for each domain:
  == domain 1  score: -2.6 bits;  conditional E-value: 1.3
                 XXXXXXXX....XXXXX.XXXXXXXXX.XXXXXX...........XXXXXXXXXXXXXXX. CS
  Forkhead_N  38 anmngyagaaamngmssssmtgmssgyasagspl...........gmmgmssmssslspsg 87 
                 ++m++   +a+++++++ + +  ss ++ a  p+           g+++m+s++  +++++
  KOO21961.1 393 SSMTSIELPAGLTSLGGFAFARCSSLTSIAL-PAglmsigectfyGCSSMTSIALPAGLMS 452
                 2222222223333333321111111111111.11112222222444444444444444443 PP

  == domain 2  score: 3.3 bits;  conditional E-value: 0.02
                 XXXXXXXXXXXXXXXXXXXX.XXXXXXXXXX....XXXXX.XXXXXXXXX.XXXXXX..........XXXXXXXXXXXXXXX. CS
  Forkhead_N  16 ysmnsMstyvamnssqasat.ssanmngyagaaamngmssssmtgmssgyasagspl..........gmmgmssmssslspsg 87 
                  sm+s+ ++++++s+  sa+ + ++m++ a +a+++++s s+  g ss  + a ++           g+++++s++  +++++
  KOO21961.1 600 SSMTSIKLPAGLMSIGRSAFyGCSSMTSIALPAGLTSISESAFYGCSSMASVALPAGlmsidwgafyGCSSLTSVALPAGLMS 682
                 68999999999999966666677777788888888888886655554444333333245577777888888888877666665 PP

  == domain 3  score: -0.8 bits;  conditional E-value: 0.35
                 X.....XXXXXXXXXXXXXXXXXXXX..........XXXXXXXXXX....XXXXX.XXXXXXXXX.XXXXXX..XXXXXXXXXXXXXXX..XXX CS
  Forkhead_N  15 n.....ysmnsMstyvamnssqasat..........ssanmngyagaaamngmssssmtgmssgyasagspl..gmmgmssmssslspsgtmga 91 
                 +      sm+s+ ++++++s++ +a+          +  +  ++ g  a+ g ss++   +++g++s+g++   g+++m+s+     +++++++
  KOO21961.1 732 SafygcSSMTSIELPAGLMSIDWGAFygcssltsiaLPVGL-TSLGLHAFDGCSSMTSIALPAGLMSIGEGTfsGCSSMTSIE----LPAGLKS 820
                 13455678999999999999966666666667676544444.77788889999999999999999999888766666666553....3333444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (864 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       158  (0.00881254); expected 358.6 (0.02)
Passed bias filter:                      123  (0.00686039); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.63u 0.28s 00:00:00.91 Elapsed: 00:00:00.42
# Mc/sec: 6145.22
//
Query:       KOO21962.1  [L=575]
Description: surface antigen -like protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   1.1e-100  332.5   0.0    7.8e-36  122.9   0.1    3.1  3  LRR_5     BspA type Leucine rich repeat region (6 copies)
    2.1e-19   69.0   0.0     0.0083   15.9   0.0    7.7 11  LRR_8     Leucine rich repeat
    4.4e-11   42.7   0.1    7.2e-11   42.0   0.1    1.3  1  WW        WW domain
    5.8e-05   23.4   0.3         92    3.7   0.0    6.8  9  LRR_4     Leucine Rich repeats (2 copies)


Domain annotation for each model (and alignments):
>> LRR_5  BspA type Leucine rich repeat region (6 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  104.3   0.0   9.8e-34   4.4e-30       3     103 ..     297     398 ..     295     398 .. 0.97
   2 !  117.8   0.0   6.3e-38   2.8e-34       1     104 [.     364     469 ..     364     470 .. 0.84
   3 !  122.9   0.1   1.7e-39   7.8e-36       2     103 ..     457     559 ..     456     562 .. 0.92

  Alignments for each domain:
  == domain 1  score: 104.3 bits;  conditional E-value: 9.8e-34
       LRR_5   3 IgsyaFync.nltsitipssvtsIgeyaFsnctslksitlpsslteigsyaFsncssltsitipssltsigeyaFsncsslkeitlpsnlttigssaFs 100
                 +++yaF++  ++ si +p+ +tsIg  aF++c+s++si+lp +lt+ig yaFs cssltsi +p  ltsigeyaF++cssl++i+lp  lt++g  aF 
  KOO21962.1 297 VPAYAFRGDmSMRSIALPTGLTSIGRWAFEGCSSMTSIELPAGLTSIGGYAFSRCSSLTSIALPPGLTSIGEYAFRGCSSLTSIELPAGLTSLGVFAFH 395
                 678*****99***************************************************************************************** PP

       LRR_5 101 ncs 103
                 +cs
  KOO21962.1 396 GCS 398
                 995 PP

  == domain 2  score: 117.8 bits;  conditional E-value: 6.3e-38
       LRR_5   1 teIgsyaFync.nltsitipssvtsIgeyaFsnctslksitlpsslteigsyaFsncssltsitipssltsigeyaFsncsslkeitlpsnlttigssa 98 
                 t+Ig+yaF++c +ltsi++p  +ts+g +aF++c+sl+si+lp +lt+ig++aF +cssltsi++p  ltsig+ aF++cssl++i+lp  lt++g  a
  KOO21962.1 364 TSIGEYAFRGCsSLTSIELPAGLTSLGVFAFHGCSSLTSIELPAGLTSIGEFAFHGCSSLTSIELPAGLTSIGDGAFRGCSSLTSIKLPAGLTSFGVFA 462
                 678999999998999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 PP

       LRR_5  99 Fsnc.sl 104
                 F +c sl
  KOO21962.1 463 FHGCsSL 469
                 9988666 PP

  == domain 3  score: 122.9 bits;  conditional E-value: 1.7e-39
       LRR_5   2 eIgsyaFync.nltsitipssvtsIgeyaFsnctslksitlpsslteigsyaFsncssltsitipssltsigeyaFsncsslkeitlpsnlttigssaF 99 
                 ++g +aF++c +ltsi++p  +tsIge+aFs+c+sl+si+lp +lt+ig++aFs+cssltsi++p  ltsige+aF++cssl++i+lp  lt+ig++aF
  KOO21962.1 457 SFGVFAFHGCsSLTSIELPAGLTSIGEFAFSGCSSLTSIELPAGLTSIGEFAFSGCSSLTSIELPAGLTSIGEWAFNGCSSLTSIELPAGLTSIGDNAF 555
                 677889999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 PP

       LRR_5 100 sncs 103
                  +cs
  KOO21962.1 556 HGCS 559
                 9997 PP

>> LRR_8  Leucine rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.0      0.58   2.6e+03      47      58 ..     205     216 ..     203     220 .. 0.60
   2 !    6.4   0.0    0.0016       7.2      13      56 ..     317     359 ..     315     360 .. 0.87
   3 !   10.6   0.0   8.1e-05      0.36      13      56 ..     340     382 ..     338     384 .. 0.93
   4 !   10.6   0.0   8.2e-05      0.37      13      56 ..     363     405 ..     361     407 .. 0.91
   5 !   12.0   0.0     3e-05      0.14      13      56 ..     386     428 ..     384     430 .. 0.94
   6 !   15.9   0.0   1.9e-06    0.0083      13      56 ..     409     451 ..     406     453 .. 0.95
   7 !   13.6   0.0   9.3e-06     0.041      13      56 ..     432     474 ..     430     476 .. 0.92
   8 !    9.7   0.0   0.00016      0.72      13      56 ..     455     497 ..     453     499 .. 0.88
   9 !   13.0   0.0   1.4e-05     0.064      13      56 ..     478     520 ..     476     522 .. 0.94
  10 !   11.2   0.0   5.3e-05      0.24      13      56 ..     501     543 ..     499     545 .. 0.94
  11 !    5.8   0.0    0.0025        11      13      48 ..     524     558 ..     522     559 .. 0.87

  Alignments for each domain:
  == domain 1  score: -1.7 bits;  conditional E-value: 0.58
                 T--S-.EEE--S CS
       LRR_8  47 gLpsLrsLdLsg 58 
                 +L  +++LdLs+
  KOO21962.1 205 NLVEVTELDLSD 216
                 455566666654 PP

  == domain 2  score: 6.4 bits;  conditional E-value: 0.0016
                 -SEE-TTSSTT-TT--EEE--SS---GGGGGGGTT--S-.EEE- CS
       LRR_8  13 ltslddeaFkglsnLkvLdLsnNllttlspgafsgLpsLrsLdL 56 
                 lts++  aF+g+s++++++L    lt++   afs ++sL+s+ L
  KOO21962.1 317 LTSIGRWAFEGCSSMTSIELPAG-LTSIGGYAFSRCSSLTSIAL 359
                 88999999999999999999998.99999999999999998765 PP

  == domain 3  score: 10.6 bits;  conditional E-value: 8.1e-05
                 -SEE-TTSSTT-TT--EEE--SS---GGGGGGGTT--S-.EEE- CS
       LRR_8  13 ltslddeaFkglsnLkvLdLsnNllttlspgafsgLpsLrsLdL 56 
                 lts++  aF+++s+L+++ L    lt++ + af+g++sL+s+ L
  KOO21962.1 340 LTSIGGYAFSRCSSLTSIALPPG-LTSIGEYAFRGCSSLTSIEL 382
                 899*****************999.****************9988 PP

  == domain 4  score: 10.6 bits;  conditional E-value: 8.2e-05
                 -SEE-TTSSTT-TT--EEE--SS---GGGGGGGTT--S-.EEE- CS
       LRR_8  13 ltslddeaFkglsnLkvLdLsnNllttlspgafsgLpsLrsLdL 56 
                 lts++  aF+g+s+L++++L    lt+l   af+g++sL+s+ L
  KOO21962.1 363 LTSIGEYAFRGCSSLTSIELPAG-LTSLGVFAFHGCSSLTSIEL 405
                 899*****************988.8888888********99988 PP

  == domain 5  score: 12.0 bits;  conditional E-value: 3e-05
                 -SEE-TTSSTT-TT--EEE--SS---GGGGGGGTT--S-.EEE- CS
       LRR_8  13 ltslddeaFkglsnLkvLdLsnNllttlspgafsgLpsLrsLdL 56 
                 ltsl+  aF+g+s+L++++L    lt++ + af+g++sL+s+ L
  KOO21962.1 386 LTSLGVFAFHGCSSLTSIELPAG-LTSIGEFAFHGCSSLTSIEL 428
                 899*****************999.9***************9988 PP

  == domain 6  score: 15.9 bits;  conditional E-value: 1.9e-06
                 -SEE-TTSSTT-TT--EEE--SS---GGGGGGGTT--S-.EEE- CS
       LRR_8  13 ltslddeaFkglsnLkvLdLsnNllttlspgafsgLpsLrsLdL 56 
                 lts++  aF+g+s+L++++L    lt++  gaf+g++sL+s+ L
  KOO21962.1 409 LTSIGEFAFHGCSSLTSIELPAG-LTSIGDGAFRGCSSLTSIKL 451
                 89*******************99.*****************988 PP

  == domain 7  score: 13.6 bits;  conditional E-value: 9.3e-06
                 -SEE-TTSSTT-TT--EEE--SS---GGGGGGGTT--S-.EEE- CS
       LRR_8  13 ltslddeaFkglsnLkvLdLsnNllttlspgafsgLpsLrsLdL 56 
                 lts++d+aF+g+s+L++++L    lt++   af+g++sL+s+ L
  KOO21962.1 432 LTSIGDGAFRGCSSLTSIKLPAG-LTSFGVFAFHGCSSLTSIEL 474
                 89******************999.8998899********99988 PP

  == domain 8  score: 9.7 bits;  conditional E-value: 0.00016
                 -SEE-TTSSTT-TT--EEE--SS---GGGGGGGTT--S-.EEE- CS
       LRR_8  13 ltslddeaFkglsnLkvLdLsnNllttlspgafsgLpsLrsLdL 56 
                 lts +  aF+g+s+L++++L    lt++ + afsg++sL+s+ L
  KOO21962.1 455 LTSFGVFAFHGCSSLTSIELPAG-LTSIGEFAFSGCSSLTSIEL 497
                 77888889999999999999998.99999999999999999987 PP

  == domain 9  score: 13.0 bits;  conditional E-value: 1.4e-05
                 -SEE-TTSSTT-TT--EEE--SS---GGGGGGGTT--S-.EEE- CS
       LRR_8  13 ltslddeaFkglsnLkvLdLsnNllttlspgafsgLpsLrsLdL 56 
                 lts++  aF+g+s+L++++L    lt++ + afsg++sL+s+ L
  KOO21962.1 478 LTSIGEFAFSGCSSLTSIELPAG-LTSIGEFAFSGCSSLTSIEL 520
                 89*******************99.9****************988 PP

  == domain 10  score: 11.2 bits;  conditional E-value: 5.3e-05
                 -SEE-TTSSTT-TT--EEE--SS---GGGGGGGTT--S-.EEE- CS
       LRR_8  13 ltslddeaFkglsnLkvLdLsnNllttlspgafsgLpsLrsLdL 56 
                 lts++  aF+g+s+L++++L    lt++ + af g++sL+s+ L
  KOO21962.1 501 LTSIGEFAFSGCSSLTSIELPAG-LTSIGEWAFNGCSSLTSIEL 543
                 89*******************99.****************9988 PP

  == domain 11  score: 5.8 bits;  conditional E-value: 0.0025
                 -SEE-TTSSTT-TT--EEE--SS---GGGGGGGTT- CS
       LRR_8  13 ltslddeaFkglsnLkvLdLsnNllttlspgafsgL 48 
                 lts++  aF+g+s+L++++L    lt++  +af+g+
  KOO21962.1 524 LTSIGEWAFNGCSSLTSIELPAG-LTSIGDNAFHGC 558
                 8999999************9888.888888888886 PP

>> WW  WW domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.0   0.1   1.6e-14   7.2e-11       1      31 []     155     184 ..     155     184 .. 0.98

  Alignments for each domain:
  == domain 1  score: 42.0 bits;  conditional E-value: 1.6e-14
                 X-TTEEEEE-TTTT-EEEEETTT--EESS-- CS
          WW   1 LPpGWeeqwdpdsGrvYYyNheTgetqWekP 31 
                 LP+GW + + pd GrvYY++  T+et+W++P
  KOO21962.1 155 LPEGWMATSAPD-GRVYYFHAATRETSWTRP 184
                 8***********.*****************9 PP

>> LRR_4  Leucine Rich repeats (2 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.0      0.61   2.7e+03      21      32 ..     205     216 ..     198     219 .. 0.68
   2 ?   -2.3   0.0       1.5   6.9e+03      13      16 ..     340     343 ..     328     359 .. 0.53
   3 ?    1.4   0.0      0.11   4.7e+02      21      30 ..     373     382 ..     350     389 .. 0.61
   4 ?    3.7   0.0     0.021        92      13      39 ..     377     403 ..     371     416 .. 0.68
   5 ?    2.3   0.0     0.056   2.5e+02      13      30 ..     409     428 ..     396     437 .. 0.59
   6 ?    2.0   0.0     0.068   3.1e+02      14      30 ..     433     451 ..     420     484 .. 0.60
   7 ?    3.2   0.0     0.029   1.3e+02      13      30 ..     478     497 ..     466     508 .. 0.55
   8 ?    3.3   0.0     0.027   1.2e+02      13      30 ..     501     520 ..     486     531 .. 0.54
   9 ?    2.5   0.0     0.046   2.1e+02      13      30 ..     524     543 ..     513     553 .. 0.69

  Alignments for each domain:
  == domain 1  score: -1.0 bits;  conditional E-value: 0.61
                 H-TT--EEE-.- CS
       LRR_4  21 klpnLkeLdLsg 32 
                 +l   +eLdLs+
  KOO21962.1 205 NLVEVTELDLSD 216
                 477778888865 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 1.5
                 --E- CS
       LRR_4  13 ltdi 16 
                 lt+i
  KOO21962.1 340 LTSI 343
                 3444 PP

  == domain 3  score: 1.4 bits;  conditional E-value: 0.11
                 H-TT--EEE- CS
       LRR_4  21 klpnLkeLdL 30 
                 ++ +L+++ L
  KOO21962.1 373 GCSSLTSIEL 382
                 4555555444 PP

  == domain 4  score: 3.7 bits;  conditional E-value: 0.021
                 --E-S-HHH-TT--EEE-.-S-----G CS
       LRR_4  13 ltdiplleklpnLkeLdLsgNnlitdl 39 
                 lt+i+l+++l++L ++  +g++ +t++
  KOO21962.1 377 LTSIELPAGLTSLGVFAFHGCSSLTSI 403
                 777777777777766665556555555 PP

  == domain 5  score: 2.3 bits;  conditional E-value: 0.056
                 --E-S-HH..H-TT--EEE- CS
       LRR_4  13 ltdiplle..klpnLkeLdL 30 
                 lt+i+ ++  ++ +L+++ L
  KOO21962.1 409 LTSIGEFAfhGCSSLTSIEL 428
                 66666644436777777666 PP

  == domain 6  score: 2.0 bits;  conditional E-value: 0.068
                 -E-S-..HHH-TT--EEE- CS
       LRR_4  14 tdipl..leklpnLkeLdL 30 
                 t+i+   ++++ +L+++ L
  KOO21962.1 433 TSIGDgaFRGCSSLTSIKL 451
                 4555544445555555544 PP

  == domain 7  score: 3.2 bits;  conditional E-value: 0.029
                 --E-S-HH..H-TT--EEE- CS
       LRR_4  13 ltdiplle..klpnLkeLdL 30 
                 lt+i+ ++  ++ +L+++ L
  KOO21962.1 478 LTSIGEFAfsGCSSLTSIEL 497
                 66666633425777777666 PP

  == domain 8  score: 3.3 bits;  conditional E-value: 0.027
                 --E-S-HH..H-TT--EEE- CS
       LRR_4  13 ltdiplle..klpnLkeLdL 30 
                 lt+i+ ++  ++ +L+++ L
  KOO21962.1 501 LTSIGEFAfsGCSSLTSIEL 520
                 55555533324666666555 PP

  == domain 9  score: 2.5 bits;  conditional E-value: 0.046
                 --E-S-..HHH-TT--EEE- CS
       LRR_4  13 ltdipl..leklpnLkeLdL 30 
                 lt+i+   ++++ +L+++ L
  KOO21962.1 524 LTSIGEwaFNGCSSLTSIEL 543
                 78888888888999999887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (575 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       202  (0.0112667); expected 358.6 (0.02)
Passed bias filter:                      142  (0.00792013); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.56u 0.26s 00:00:00.82 Elapsed: 00:00:00.44
# Mc/sec: 3902.89
//
Query:       KOO21963.1  [L=154]
Description: aaa-domain-containing protein, partial [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.3e-31  108.5   0.0    4.3e-31  108.1   0.0    1.1  1  AAA              ATPase family associated with various cellul
    9.4e-07   29.4   0.2    5.1e-05   23.7   0.2    2.1  2  AAA_16           AAA ATPase domain
    4.9e-05   23.5   0.0    0.00011   22.4   0.0    1.5  1  AAA_2            AAA domain (Cdc48 subfamily)
    8.1e-05   22.3   0.6      0.011   15.3   0.5    2.1  2  AAA_25           AAA domain
    0.00018   21.3   0.0    0.00027   20.7   0.0    1.2  1  IstB_IS21        IstB-like ATP binding protein
    0.00025   21.0   0.1    0.00079   19.4   0.1    1.8  1  AAA_5            AAA domain (dynein-related subfamily)
    0.00049   20.4   0.0     0.0045   17.3   0.1    2.0  2  AAA_22           AAA domain
     0.0011   18.8   0.0     0.0014   18.4   0.0    1.2  1  RuvB_N           Holliday junction DNA helicase RuvB P-loop d
     0.0012   18.1   0.0     0.0015   17.8   0.0    1.1  1  TIP49            TIP49 P-loop domain
      0.003   17.7   0.0     0.0041   17.3   0.0    1.3  1  AAA_33           AAA domain
     0.0035   17.7   0.0     0.0048   17.3   0.0    1.4  1  RNA_helicase     RNA helicase
      0.006   16.1   0.0      0.011   15.2   0.0    1.4  1  PhoH             PhoH-like protein
     0.0076   16.2   0.1      0.028   14.4   0.0    1.8  2  NACHT            NACHT domain
     0.0081   16.4   0.0       0.01   16.1   0.0    1.2  1  AAA_28           AAA domain
  ------ inclusion threshold ------
      0.017   14.8   0.0      0.038   13.7   0.0    1.7  1  Sigma54_activat  Sigma-54 interaction domain
      0.018   15.1   0.0      0.025   14.6   0.0    1.3  1  TsaE             Threonylcarbamoyl adenosine biosynthesis pro
      0.019   14.4   0.0      0.026   13.9   0.0    1.2  1  Mg_chelatase     Magnesium chelatase, subunit ChlI
      0.021   15.3   0.0      0.028   15.0   0.0    1.3  1  ABC_tran         ABC transporter
      0.061   13.0   0.0      0.085   12.6   0.0    1.2  1  AAA_24           AAA domain
      0.072   13.1   0.0      0.094   12.7   0.0    1.1  1  AAA_14           AAA domain
      0.081   12.8   0.0      0.096   12.6   0.0    1.2  1  Rad17            Rad17 P-loop domain
      0.084   12.8   0.0       0.25   11.2   0.0    1.6  2  ATPase_2         ATPase domain predominantly from Archaea
       0.12   12.9   0.0       0.15   12.6   0.0    1.2  1  AAA_18           AAA domain
       0.16   11.5   0.0       0.26   10.8   0.0    1.3  1  AAA_7            P-loop containing dynein motor region
       0.16   12.1   0.0        0.3   11.2   0.0    1.5  1  Sigma54_activ_2  Sigma-54 interaction domain


Domain annotation for each model (and alignments):
>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  108.1   0.0     6e-34   4.3e-31       1      95 [.      56     149 ..      56     152 .. 0.98

  Alignments for each domain:
  == domain 1  score: 108.1 bits;  conditional E-value: 6e-34
                 EEEESSTTSSHHHHHHHHHHHHTHEEEEEETTTCSSSSTTHHHHHHHHHHHHHHHTSTSEEEEEETGGGHHHHHTTCCCHHHHHHHHHHHHHHHH CS
         AAA   1 vllyGppGtGKTllakavakelgvefleisgsellskyvgesekkirelfkeakekakpsilfiDEidalaksrsgseseeeervvnqLlteldg 95 
                 vllyGp G+GKTlla a+a e++ +fl+++g+ell+ky+g+se+ +r+lf++a+  a p+i+f+DE+dala++r ++++++++rvvnqLl +ldg
  KOO21963.1  56 VLLYGPSGCGKTLLAAALAAEAKLPFLTVKGPELLNKYIGASEAAVRDLFERARGCA-PCIVFFDEFDALAPRRGQDSTGVTDRVVNQLLCALDG 149
                 79******************************************************9.****************999**************9998 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.7   0.2   7.1e-08   5.1e-05      14      61 ..      43      87 ..      37     107 .. 0.69
   2 ?    4.7   0.0     0.051        37     123     149 ..     101     126 ..      87     151 .. 0.69

  Alignments for each domain:
  == domain 1  score: 23.7 bits;  conditional E-value: 7.1e-08
      AAA_16 14 salervrsgrpelvllsGesGvGKsslvrellralekdggiflrgkcd 61
                +++ ++    ++ vll+G+sG+GK+ l+ +l+ +++     fl+ k  
  KOO21963.1 43 ALFASAPLRLTSGVLLYGPSGCGKTLLAAALAAEAKLP---FLTVKGP 87
                4555444445599*******************988877...4444444 PP

  == domain 2  score: 4.7 bits;  conditional E-value: 0.051
      AAA_16 123 lkrllallsrderplvlvlDdlqwade 149
                 +++l+++++    p ++++D+++ + +
  KOO21963.1 101 VRDLFERARG-CAPCIVFFDEFDALAP 126
                 5555556665.678*********5543 PP

>> AAA_2  AAA domain (Cdc48 subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.4   0.0   1.5e-07   0.00011       5     104 ..      55     148 ..      51     150 .. 0.75

  Alignments for each domain:
  == domain 1  score: 22.4 bits;  conditional E-value: 1.5e-07
                 -EEEE--TTSSHHHHHHHHHHHTT-....-EEEEEGGG-------THHHHHHHHHTTT-HHHHTTS...EEEEETGGG----.---------HHHHHHH CS
       AAA_2   5 silllgptgvGktelakalaellfvkkekkliradaselleeeevehlvsrligappgyvgaeegG...ivllDEidKihpk.essgadvSregVqrdL 99 
                  +ll gp+g+Gkt+la ala   ++    ++ ++   ell      +++   + a     +++ g    iv++DE d  +p+ ++ +  v    V++ L
  KOO21963.1  55 GVLLYGPSGCGKTLLAAALAAEAKL----PFLTVKGPELLN-----KYIGASEAAVRDLFERARGCapcIVFFDEFDALAPRrGQDSTGVTD-RVVNQL 143
                 57999******************98....999999999999.....55555555555555555554899************86555555554.567777 PP

                 HHHHH CS
       AAA_2 100 Lqile 104
                 L  l+
  KOO21963.1 144 LCALD 148
                 76666 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.5   1.5e-05     0.011      34      56 ..      54      76 ..      38      90 .. 0.86
   2 ?    5.5   0.0     0.016        11     126     172 ..      97     143 ..      76     145 .. 0.82

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 1.5e-05
      AAA_25 34 elallaGapgtGKttlaldlala 56
                + +ll+G++g+GKt la  la++
  KOO21963.1 54 SGVLLYGPSGCGKTLLAAALAAE 76
                5589****************986 PP

  == domain 2  score: 5.5 bits;  conditional E-value: 0.016
      AAA_25 126 ltadvdaleaaieevegvrlvviDplsralggdensnsdv.galveal 172
                  +a+v++l ++++  + +  v +D ++++ +   ++++ v +++v++l
  KOO21963.1  97 SEAAVRDLFERARG-CAPCIVFFDEFDALAPRRGQDSTGVtDRVVNQL 143
                 4688999*******.56***************999999998****997 PP

>> IstB_IS21  IstB-like ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.7   0.0   3.8e-07   0.00027      32      71 ..      38      77 ..      30      84 .. 0.88

  Alignments for each domain:
  == domain 1  score: 20.7 bits;  conditional E-value: 3.8e-07
   IstB_IS21 32 krkvkeLatlsfiekkenivllGpsGvGKshlaialgvea 71
                +r+ ++L + + ++   +++l GpsG GK+ la+al+ ea
  KOO21963.1 38 PRQHRALFASAPLRLTSGVLLYGPSGCGKTLLAAALAAEA 77
                67778888888889999********************987 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.4   0.1   1.1e-06   0.00079       1      34 [.      55      88 ..      55     128 .. 0.81

  Alignments for each domain:
  == domain 1  score: 19.4 bits;  conditional E-value: 1.1e-06
                EEEEE--SSSSHHHHHHHGGGGBS--EEEEE--T CS
       AAA_5  1 dvlLvGppGtgKselaerlaaalnreveyvqltr 34
                +vlL Gp+G+gK+ la  laa  + ++++v +++
  KOO21963.1 55 GVLLYGPSGCGKTLLAAALAAEAKLPFLTVKGPE 88
                59*******************9999999998776 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   0.1   6.3e-06    0.0045       8      30 ..      56      78 ..      52     108 .. 0.71
   2 ?    1.8   0.0      0.37   2.6e+02      83     105 ..     105     128 ..      85     148 .. 0.66

  Alignments for each domain:
  == domain 1  score: 17.3 bits;  conditional E-value: 6.3e-06
      AAA_22  8 lvvtGesGtGKTtllrrlleqld 30
                ++++G+sG+GKT+l++ l+ +++
  KOO21963.1 56 VLLYGPSGCGKTLLAAALAAEAK 78
                589****************9983 PP

  == domain 2  score: 1.8 bits;  conditional E-value: 0.37
      AAA_22  83 eqalraravielliiDEaqhlr..s 105
                  + +r +a   ++  DE++ l   +
  KOO21963.1 105 FERARGCAP-CIVFFDEFDALAprR 128
                 333444445.9999******97641 PP

>> RuvB_N  Holliday junction DNA helicase RuvB P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.4   0.0   1.9e-06    0.0014      35      70 ..      55      90 ..      43     126 .. 0.88

  Alignments for each domain:
  == domain 1  score: 18.4 bits;  conditional E-value: 1.9e-06
      RuvB_N 35 hvllyGpPGlGkttlakiiakelgvklkitsgPvle 70
                 vllyGp G Gkt la+ +a+e +  + +  gP l 
  KOO21963.1 55 GVLLYGPSGCGKTLLAAALAAEAKLPFLTVKGPELL 90
                59*************************999999864 PP

>> TIP49  TIP49 P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.8   0.0   2.1e-06    0.0015      52     100 ..      55     101 ..      50     111 .. 0.85

  Alignments for each domain:
  == domain 1  score: 17.8 bits;  conditional E-value: 2.1e-06
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
       TIP49  52 avLlaGpsgtGktalaiaiskelgedvpfvalsgsevyslevkktevlt 100
                 +vLl Gpsg Gkt la a++ e  +++pf +++g e+    +  +e+ +
  KOO21963.1  55 GVLLYGPSGCGKTLLAAALAAE--AKLPFLTVKGPELLNKYIGASEAAV 101
                 79******************98..57***********999999888755 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   0.0   5.7e-06    0.0041       2      40 ..      56      96 ..      56     144 .. 0.78

  Alignments for each domain:
  == domain 1  score: 17.3 bits;  conditional E-value: 5.7e-06
      AAA_33  2 vllvGlpGsGKstlaerllkklg..avllssdtlrrrlfgt 40
                vll G++G+GK+ la  l+++ +  + ++  ++l++++ g 
  KOO21963.1 56 VLLYGPSGCGKTLLAAALAAEAKlpFLTVKGPELLNKYIGA 96
                7899**************98877779999999977776653 PP

>> RNA_helicase  RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   0.0   6.7e-06    0.0048       1      23 [.      56      78 ..      56     127 .. 0.79

  Alignments for each domain:
  == domain 1  score: 17.3 bits;  conditional E-value: 6.7e-06
  RNA_helicase  1 iwlyGpsgeGKStlakeLakall 23
                  ++lyGpsg+GK++la  La++  
    KOO21963.1 56 VLLYGPSGCGKTLLAAALAAEAK 78
                  689**************998765 PP

>> PhoH  PhoH-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.0   1.5e-05     0.011      21      43 ..      55      77 ..      37      81 .. 0.82

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 1.5e-05
                EEEEE--TTSSTTHHHHHHHHHH CS
        PhoH 21 ivfaiGpaGtGKtylavalavea 43
                 v   Gp+G+GKt+la ala+ea
  KOO21963.1 55 GVLLYGPSGCGKTLLAAALAAEA 77
                57889***************986 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.4   0.0   3.9e-05     0.028       3      25 ..      56      78 ..      54      84 .. 0.90
   2 ?   -1.0   0.0         2   1.4e+03      85     105 ..     116     136 ..      88     147 .. 0.61

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 3.9e-05
                EEEEC-TTTCHHHHHHHHHHHHC CS
       NACHT  3 vilqGeaGsGKTtLlqklalawa 25
                v+l G++G+GKT L++ la +++
  KOO21963.1 56 VLLYGPSGCGKTLLAAALAAEAK 78
                799***************98876 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 2
                 EEEE-STT-SS-TCH...... CS
       NACHT  85 lilDglDelvtdlgqkekqpv 105
                   +D +D l+   gq+    +
  KOO21963.1 116 VFFDEFDALAPRRGQDSTGVT 136
                 457777777777777443333 PP

>> AAA_28  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.0   1.4e-05      0.01       2      35 ..      56      94 ..      55     130 .. 0.79

  Alignments for each domain:
  == domain 1  score: 16.1 bits;  conditional E-value: 1.4e-05
      AAA_28  2 ivitGgestGKTtlleaLaar.gyp..vv..pEaareil 35
                + + G++++GKT l++aLaa+ + p  +v  pE   +++
  KOO21963.1 56 VLLYGPSGCGKTLLAAALAAEaKLPflTVkgPELLNKYI 94
                6799***************87654422555777766666 PP

>> Sigma54_activat  Sigma-54 interaction domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.0   5.3e-05     0.038      21      46 ..      52      77 ..      37     131 .. 0.84

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 5.3e-05
                     SSS-EEEECSTTSSHHHHHHHHHHHS CS
  Sigma54_activat 21 tdlsvlitGesGtGKellaraiheas 46
                      ++ vl+ G sG+GK+lla a+ ++ 
       KOO21963.1 52 LTSGVLLYGPSGCGKTLLAAALAAEA 77
                     4578***************9987644 PP

>> TsaE  Threonylcarbamoyl adenosine biosynthesis protein TsaE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.6   0.0   3.4e-05     0.025      19      59 ..      53      93 ..      31     111 .. 0.79

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 3.4e-05
                TEEEEEEESTTSSHHHHHHHHHHHTT--..----TTTTSEEEE CS
        TsaE 19 gdvilLeGdLGaGKTtlvrglakalgve..evkSPTFtlveeY 59
                ++ +lL+G+ G+GKT l+ +la++ ++   +vk P   l+++Y
  KOO21963.1 53 TSGVLLYGPSGCGKTLLAAALAAEAKLPflTVKGP--ELLNKY 93
                4559*******************999987889888..466666 PP

>> Mg_chelatase  Magnesium chelatase, subunit ChlI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.0   3.6e-05     0.026      25      43 ..      56      74 ..      40      91 .. 0.88

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 3.6e-05
  Mg_chelatase 25 lllvGppGsGKtmlakrlp 43
                  +ll+Gp+G+GKt+la++l+
    KOO21963.1 56 VLLYGPSGCGKTLLAAALA 74
                  89*************9986 PP

>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.0   0.0   3.8e-05     0.028      12      35 ..      54      77 ..      46     106 .. 0.88

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 3.8e-05
                SEEEEEESTTSSHHHHHHHHTTSS CS
                xxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran 12 ekvaivGenGaGKStLlkllagll 35
                + v + G++G+GK+ L+++la + 
  KOO21963.1 54 SGVLLYGPSGCGKTLLAAALAAEA 77
                56889***************9876 PP

>> AAA_24  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   0.00012     0.085       5      22 ..      56      73 ..      54     108 .. 0.87

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 0.00012
      AAA_24  5 iliyGpsgiGKTtlakel 22
                +l+yGpsg GKT la+ l
  KOO21963.1 56 VLLYGPSGCGKTLLAAAL 73
                79*************988 PP

>> AAA_14  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   0.00013     0.094       5      74 ..      56     122 ..      53     135 .. 0.76

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 0.00013
      AAA_14   5 lvitGaRrvGKTtllkqlikellvkkesilyinldderdkkladpekllelileklkeekktylflDEiq 74 
                 +++ G+  +GKT l+  l+ e       +l ++  +  +k +  +e   + ++e++++    ++f+DE  
  KOO21963.1  56 VLLYGPSGCGKTLLAAALAAEAK---LPFLTVKGPELLNKYIGASEAAVRDLFERARGCAPCIVFFDEFD 122
                 6899**************98877...66777776666666655565566666666555567889999975 PP

>> Rad17  Rad17 P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   0.00013     0.096      48     112 ..      56     121 ..      31     136 .. 0.71

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 0.00013
       Rad17  48 LLisGPsGCgkstvvkvLskelgiklrewlnpvslkep.dnqksdfkgltekesrflsqiesfkel 112
                 +L+ GPsGCgk+     L+ e    +     p +l++     +  ++ l+e      + i  f e+
  KOO21963.1  56 VLLYGPSGCGKTLLAAALAAEAKLPFLTVKGPELLNKYiGASEAAVRDLFERARGCAPCIVFFDEF 121
                 6899********999999988777666666665554430335556666666666666666666666 PP

>> ATPase_2  ATPase domain predominantly from Archaea
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   0.00034      0.25      23      41 ..      56      74 ..      51      83 .. 0.84
   2 ?   -0.8   0.0       1.7   1.2e+03     107     129 ..      98     123 ..      68     128 .. 0.60

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00034
    ATPase_2 23 yfiYGpegsGKtaLlkeii 41
                +++YGp g+GKt L   ++
  KOO21963.1 56 VLLYGPSGCGKTLLAAALA 74
                689*********9987665 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 1.7
    ATPase_2 107 elllekikkkgkk...iiiiiDelqk 129
                 e++ +++ ++++     i+++De+  
  KOO21963.1  98 EAAVRDLFERARGcapCIVFFDEFDA 123
                 23333333444446778999999865 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   0.00021      0.15       1      24 [.      56      79 ..      56     129 .. 0.77

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 0.00021
      AAA_18  1 IlltGtpGvGKttlakeLskrlgf 24
                +ll G++G+GKt la +L+ + ++
  KOO21963.1 56 VLLYGPSGCGKTLLAAALAAEAKL 79
                799***************887544 PP

>> AAA_7  P-loop containing dynein motor region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   0.00037      0.26      33      55 ..      53      75 ..      42      84 .. 0.82

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00037
       AAA_7 33 kkpvllvGptGtGKtviikdllk 55
                   vll+Gp+G+GKt+++  l  
  KOO21963.1 53 TSGVLLYGPSGCGKTLLAAALAA 75
                5679************9987655 PP

>> Sigma54_activ_2  Sigma-54 interaction domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   0.00042       0.3      21      46 ..      53      78 ..      46     131 .. 0.61

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00042
                     SS-EEEEEETT--HHHHHHCC--TTS CS
  Sigma54_activ_2 21 klpvfltGekGsgkelvArlLhknsg 46
                     ++ v+l G+ G+gk+l A +L+ ++ 
       KOO21963.1 53 TSGVLLYGPSGCGKTLLAAALAAEAK 78
                     678******************97654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (154 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       403  (0.0224776); expected 358.6 (0.02)
Passed bias filter:                      357  (0.0199119); expected 358.6 (0.02)
Passed Vit filter:                        97  (0.00541023); expected 17.9 (0.001)
Passed Fwd filter:                        25  (0.00139439); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              25  [number of targets reported over threshold]
# CPU time: 0.43u 0.26s 00:00:00.69 Elapsed: 00:00:00.40
# Mc/sec: 1147.21
//
Query:       KOO21964.1  [L=338]
Description: hypothetical protein Ctob_000295 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (338 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1280  (0.0713927); expected 358.6 (0.02)
Passed bias filter:                      589  (0.0328518); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.48u 0.26s 00:00:00.74 Elapsed: 00:00:00.40
# Mc/sec: 2514.75
//
Query:       KOO21965.1  [L=868]
Description: pkd domain-containing protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
      2e-25   88.5  83.9    3.6e-05   23.7   1.6   12.4 13  SBBP            Beta-propeller repeat
     0.0061   16.8   1.5         57    4.0   0.0    4.8  4  DUF3712         Protein of unknown function (DUF3712)
  ------ inclusion threshold ------
       0.19   11.2   5.5         26    4.2   0.0    5.2  7  PcrB            PcrB family
        2.3    8.3   7.2    1.8e+02    2.2   0.1    5.8  7  DUF1398         Protein of unknown function (DUF1398)


Domain annotation for each model (and alignments):
>> SBBP  Beta-propeller repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.0       1.1   4.9e+03       1      13 [.      37      48 ..      37      51 .. 0.80
   2 !   12.4   0.5   2.6e-05      0.12       1      30 [.      74     105 ..      74     106 .. 0.83
   3 !   14.1   2.1   7.7e-06     0.035       1      31 [.     138     168 ..     138     168 .. 0.89
   4 !   16.2   1.5   1.7e-06    0.0076       1      31 [.     200     230 ..     200     233 .. 0.94
   5 ?    3.4   0.3     0.018        80      16      30 ..     300     314 ..     297     315 .. 0.93
   6 !   16.0   1.8     2e-06     0.009       1      30 [.     348     377 ..     348     377 .. 0.94
   7 !   16.8   0.9   1.1e-06     0.005       1      31 [.     410     440 ..     410     443 .. 0.94
   8 ?    3.4   0.3     0.018        80      16      30 ..     510     524 ..     507     525 .. 0.93
   9 !   23.7   1.6   8.1e-09   3.6e-05       1      31 [.     559     588 ..     559     588 .. 0.96
  10 ?   -2.1   0.0      0.89     4e+03       2       9 ..     621     628 ..     620     644 .. 0.61
  11 !   12.7   0.1   2.1e-05     0.094      11      30 ..     668     687 ..     660     688 .. 0.88
  12 !   15.0   3.4   4.1e-06     0.018       1      31 [.     720     752 ..     720     752 .. 0.93
  13 !    6.9   0.9    0.0014       6.4      15      30 ..     812     827 ..     806     828 .. 0.92

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 1.1
        SBBP  1 qWstqlGgpgast 13
                +W  q Gg+++ +
  KOO21965.1 37 EWAVQAGGGSS-L 48
                79*****9887.4 PP

  == domain 2  score: 12.4 bits;  conditional E-value: 2.6e-05
        SBBP   1 qWstqlGgpgast..ygngIavDsnGNiYvtG 30 
                 +W  q Gg+g ++    +gIa D  G ++vtG
  KOO21965.1  74 DWAVQAGGTGINDeaRSSGIAHDGAGGAFVTG 105
                 59999**666666447889************9 PP

  == domain 3  score: 14.1 bits;  conditional E-value: 7.7e-06
        SBBP   1 qWstqlGgpgastygngIavDsnGN.iYvtGs 31 
                 +W  q Gg+++ ++g gIa D     ++vtG+
  KOO21965.1 138 DWAVQAGGASY-DQGFGIAHDGTNGgAFVTGT 168
                 59*********.*********65555*****7 PP

  == domain 4  score: 16.2 bits;  conditional E-value: 1.7e-06
        SBBP   1 qWstqlGgpgastygngIavDsnGNiYvtGs 31 
                 +W+ q Gg g++  g+gIa D +G + vtG+
  KOO21965.1 200 DWVVQAGGKGTDNVGRGIAHDGSGGALVTGT 230
                 5******999977*****************8 PP

  == domain 5  score: 3.4 bits;  conditional E-value: 0.018
        SBBP  16 ngIavDsnGNiYvtG 30 
                  gIa D  G + vtG
  KOO21965.1 300 VGIAHDGAGGALVTG 314
                 59************9 PP

  == domain 6  score: 16.0 bits;  conditional E-value: 2e-06
        SBBP   1 qWstqlGgpgastygngIavDsnGN.iYvtG 30 
                 +W  q Gg+++ ++gngIa D     ++vtG
  KOO21965.1 348 DWAVQAGGASY-DQGNGIAHDGANGgAFVTG 377
                 59*********.**********8777****9 PP

  == domain 7  score: 16.8 bits;  conditional E-value: 1.1e-06
        SBBP   1 qWstqlGgpgastygngIavDsnGNiYvtGs 31 
                 +W+ q Gg g++ +g+gIa D +G + vtG+
  KOO21965.1 410 DWVVQAGGMGTDNFGRGIAHDGSGGALVTGT 440
                 5******999977*****************8 PP

  == domain 8  score: 3.4 bits;  conditional E-value: 0.018
        SBBP  16 ngIavDsnGNiYvtG 30 
                  gIa D  G + vtG
  KOO21965.1 510 VGIAHDGAGGALVTG 524
                 59************9 PP

  == domain 9  score: 23.7 bits;  conditional E-value: 8.1e-09
        SBBP   1 qWstqlGgpgastygngIavDsnGNiYvtGs 31 
                 +W  q Gg+++ ++gngIa D  G ++vtG+
  KOO21965.1 559 DWAVQAGGASY-DQGNGIAHDGAGGAFVTGD 588
                 59*********.******************5 PP

  == domain 10  score: -2.1 bits;  conditional E-value: 0.89
        SBBP   2 WstqlGgp 9  
                 W  qlGg+
  KOO21965.1 621 WAVQLGGA 628
                 99999943 PP

  == domain 11  score: 12.7 bits;  conditional E-value: 2.1e-05
        SBBP  11 astygngIavDsnGNiYvtG 30 
                 as +gngIa D  G ++vtG
  KOO21965.1 668 ASSSGNGIAHDGAGGAFVTG 687
                 5678***************9 PP

  == domain 12  score: 15.0 bits;  conditional E-value: 4.1e-06
        SBBP   1 qWstqlGgpgast.ygngIavDsnGN.iYvtGs 31 
                 +W  q Gg+++++ +g+gIa D     ++vtG+
  KOO21965.1 720 DWAVQAGGASYDYdQGYGIAHDGANGgAFVTGT 752
                 59*********999*********8777*****7 PP

  == domain 13  score: 6.9 bits;  conditional E-value: 0.0014
        SBBP  15 gngIavDsnGNiYvtG 30 
                 g+gIa D  G ++vtG
  KOO21965.1 812 GRGIAYDGTGGAFVTG 827
                 89************** PP

>> DUF3712  Protein of unknown function (DUF3712)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.0   0.0     0.051   2.3e+02      24      53 ..     114     143 ..     108     150 .. 0.91
   2 ?    4.0   0.0     0.013        57      25      55 ..     253     283 ..     248     288 .. 0.90
   3 ?    2.8   0.1     0.031   1.4e+02      26      56 ..     464     495 ..     461     499 .. 0.88
   4 ?    1.9   0.0     0.057   2.5e+02      24      53 ..     696     725 ..     690     730 .. 0.91

  Alignments for each domain:
  == domain 1  score: 2.0 bits;  conditional E-value: 0.051
     DUF3712  24 qtlditdvdaftkflealvlseefklsvkG 53 
                 +++ +t+++ f+ f+  ++ s  ++++v++
  KOO21965.1 114 GDTSLTSRGSFDAFVLHVTASGLIDWAVQA 143
                 57899**********************986 PP

  == domain 2  score: 4.0 bits;  conditional E-value: 0.013
     DUF3712  25 tlditdvdaftkflealvlseefklsvkGkt 55 
                  +++t ++++++f+  ++ s  ++++v++ t
  KOO21965.1 253 STTLTTHGDLDTFVMHVTASGAIDWAVTAGT 283
                 57899**********************9876 PP

  == domain 3  score: 2.8 bits;  conditional E-value: 0.031
     DUF3712  26 lditdvdaftkflealvlseefklsvkGkt.t 56 
                 ++++ ++++++f+  ++ s  ++++v++ t t
  KOO21965.1 464 TTLATHGDLDTFVMHVTASGVIDWAVTAGTsT 495
                 789999********************998755 PP

  == domain 4  score: 1.9 bits;  conditional E-value: 0.057
     DUF3712  24 qtlditdvdaftkflealvlseefklsvkG 53 
                 +++ +t+++ f+ f+  ++ s  ++++v++
  KOO21965.1 696 GDTSLTSRGSFDVFVLHVTASGLIDWAVQA 725
                 57899**********************986 PP

>> PcrB  PcrB family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.4   0.0     0.084   3.8e+02      69      99 ..      53      83 ..      48      91 .. 0.81
   2 ?    4.2   0.0    0.0058        26      71     103 ..     181     213 ..     175     219 .. 0.85
   3 ?   -1.6   0.0      0.34   1.5e+03      78     100 ..     264     286 ..     254     291 .. 0.85
   4 ?   -1.1   0.0      0.23     1e+03      75      95 ..     333     353 ..     328     361 .. 0.87
   5 ?    3.0   0.0     0.013        60      71     102 ..     391     422 ..     385     429 .. 0.82
   6 ?   -3.6   0.0       1.3     6e+03      78      98 ..     474     494 ..     467     497 .. 0.84
   7 ?   -1.8   0.0       0.4   1.8e+03      76      95 ..     545     564 ..     542     571 .. 0.87

  Alignments for each domain:
  == domain 1  score: 0.4 bits;  conditional E-value: 0.084
                GG--TTSSEEEEEEETTBSSTTTTTHHHHHH CS
        PcrB 69 egvvryaDalFvmsllnsanadWivgahalg 99
                + ++r+ +  Fvm +  s + dW v a   g
  KOO21965.1 53 SLLSRGGEDAFVMHVTASGDIDWAVQAGGTG 83
                5578888889*************99876555 PP

  == domain 2  score: 4.2 bits;  conditional E-value: 0.0058
                 --TTSSEEEEEEETTBSSTTTTTHHHHHHHHHH CS
        PcrB  71 vvryaDalFvmsllnsanadWivgahalglkkv 103
                  +r++ a+Fvm +  s   dW+v a  +g  +v
  KOO21965.1 181 TSRGVYAVFVMHVTASGVIDWVVQAGGKGTDNV 213
                 589999*****************9988887766 PP

  == domain 3  score: -1.6 bits;  conditional E-value: 0.34
                 EEEEEETTBSSTTTTTHHHHHHH CS
        PcrB  78 lFvmsllnsanadWivgahalgl 100
                  Fvm +  s   dW v+a + +l
  KOO21965.1 264 TFVMHVTASGAIDWAVTAGTSAL 286
                 69***************987765 PP

  == domain 4  score: -1.1 bits;  conditional E-value: 0.23
                 SSEEEEEEETTBSSTTTTTHH CS
        PcrB  75 aDalFvmsllnsanadWivga 95 
                  D +Fvm +  s   dW v a
  KOO21965.1 333 YDDVFVMHVTASGAVDWAVQA 353
                 589**************9975 PP

  == domain 5  score: 3.0 bits;  conditional E-value: 0.013
                 --TTSSEEEEEEETTBSSTTTTTHHHHHHHHH CS
        PcrB  71 vvryaDalFvmsllnsanadWivgahalglkk 102
                  +r++  +Fvm +  s   dW+v a   g  +
  KOO21965.1 391 TSRGVHSVFVMHVTASGVIDWVVQAGGMGTDN 422
                 589999*****************976666555 PP

  == domain 6  score: -3.6 bits;  conditional E-value: 1.3
                 EEEEEETTBSSTTTTTHHHHH CS
        PcrB  78 lFvmsllnsanadWivgahal 98 
                  Fvm +  s   dW v+a + 
  KOO21965.1 474 TFVMHVTASGVIDWAVTAGTS 494
                 599************998765 PP

  == domain 7  score: -1.8 bits;  conditional E-value: 0.4
                 SEEEEEEETTBSSTTTTTHH CS
        PcrB  76 DalFvmsllnsanadWivga 95 
                 D +Fvm +  s   dW v a
  KOO21965.1 545 DDVFVMHVTASGAIDWAVQA 564
                 899*************9865 PP

>> DUF1398  Protein of unknown function (DUF1398)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.0      0.46   2.1e+03      80      99 ..     123     142 ..     117     144 .. 0.88
   2 ?    2.2   0.1      0.04   1.8e+02      81      99 ..     186     204 ..     178     208 .. 0.88
   3 ?   -3.2   0.0       1.8   8.3e+03      81      98 ..     262     279 ..     257     282 .. 0.85
   4 ?    0.6   0.0      0.12   5.6e+02      83     100 ..     398     415 ..     391     423 .. 0.86
   5 ?    1.7   0.0     0.058   2.6e+02      80     100 ..     471     491 ..     462     498 .. 0.84
   6 ?   -0.9   0.0      0.35   1.6e+03      80      99 ..     705     724 ..     699     732 .. 0.86
   7 ?   -0.7   0.0      0.32   1.4e+03      83      98 ..     779     794 ..     777     798 .. 0.89

  Alignments for each domain:
  == domain 1  score: -1.2 bits;  conditional E-value: 0.46
                 -HHHHHHHHHHTT--EEEEE CS
     DUF1398  80 tfetfcedlAkaGvekWivd 99 
                 +f+ f+ ++ ++G + W+v+
  KOO21965.1 123 SFDAFVLHVTASGLIDWAVQ 142
                 7999*************986 PP

  == domain 2  score: 2.2 bits;  conditional E-value: 0.04
                 HHHHHHHHHHTT--EEEEE CS
     DUF1398  81 fetfcedlAkaGvekWivd 99 
                 +  f+ ++ ++Gv+ W+v+
  KOO21965.1 186 YAVFVMHVTASGVIDWVVQ 204
                 899**************97 PP

  == domain 3  score: -3.2 bits;  conditional E-value: 1.8
                 HHHHHHHHHHTT--EEEE CS
     DUF1398  81 fetfcedlAkaGvekWiv 98 
                  +tf+ ++ ++G + W+v
  KOO21965.1 262 LDTFVMHVTASGAIDWAV 279
                 5799999*********98 PP

  == domain 4  score: 0.6 bits;  conditional E-value: 0.12
                 HHHHHHHHTT--EEEEET CS
     DUF1398  83 tfcedlAkaGvekWivdl 100
                  f+ ++ ++Gv+ W+v+ 
  KOO21965.1 398 VFVMHVTASGVIDWVVQA 415
                 689999*********975 PP

  == domain 5  score: 1.7 bits;  conditional E-value: 0.058
                 -HHHHHHHHHHTT--EEEEET CS
     DUF1398  80 tfetfcedlAkaGvekWivdl 100
                 + +tf+ ++ ++Gv+ W+v  
  KOO21965.1 471 DLDTFVMHVTASGVIDWAVTA 491
                 5689*************9975 PP

  == domain 6  score: -0.9 bits;  conditional E-value: 0.35
                 -HHHHHHHHHHTT--EEEEE CS
     DUF1398  80 tfetfcedlAkaGvekWivd 99 
                 +f+ f+ ++ ++G + W+v+
  KOO21965.1 705 SFDVFVLHVTASGLIDWAVQ 724
                 7999*************997 PP

  == domain 7  score: -0.7 bits;  conditional E-value: 0.32
                 HHHHHHHHTT--EEEE CS
     DUF1398  83 tfcedlAkaGvekWiv 98 
                 tf+ ++ ++G++ W+v
  KOO21965.1 779 TFVMHVTASGIIDWAV 794
                 89999*********98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (868 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       247  (0.0137766); expected 358.6 (0.02)
Passed bias filter:                      128  (0.00713927); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.61u 0.29s 00:00:00.89 Elapsed: 00:00:00.44
# Mc/sec: 5878.32
//
Query:       KOO21966.1  [L=245]
Description: copper transporter family [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.9e-11   44.8   7.0    4.5e-10   40.3   4.1    2.2  2  Ctr       Ctr copper transporter family
    2.3e-10   40.7   0.6    3.4e-10   40.2   0.6    1.2  1  HMA       Heavy-metal-associated domain


Domain annotation for each model (and alignments):
>> Ctr  Ctr copper transporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.4   0.0    0.0029        26      11      49 ..      18      56 ..       6      72 .. 0.84
   2 !   40.3   4.1     5e-14   4.5e-10     107     148 .]      74     115 ..      60     115 .. 0.89

  Alignments for each domain:
  == domain 1  score: 5.4 bits;  conditional E-value: 0.0029
         Ctr 11 ilfrsWritskgqlagsciglfllaifyeflralrerle 49
                +l + +  +s   + + +++ +ll +++e+l ++r rl 
  KOO21966.1 18 LLHSDFPLDSPVRMSAGVVITLLLGFVVEALTCFRRRLV 56
                67777888999999999******************9985 PP

  == domain 2  score: 40.3 bits;  conditional E-value: 5e-14
         Ctr 107 irallyvvqvllaYilMLlvMtyNvglflavilGagvGeflf 148
                 i   +y++q++laY+lML++Mty+  lf+avi+G+++G+ +f
  KOO21966.1  74 ISIGMYALQTALAYVLMLIAMTYQSELFIAVIAGLALGHSCF 115
                 55679**********************************877 PP

>> HMA  Heavy-metal-associated domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.2   0.6   3.8e-14   3.4e-10       2      62 .]     182     241 ..     181     241 .. 0.93

  Alignments for each domain:
  == domain 1  score: 40.2 bits;  conditional E-value: 3.8e-14
         HMA   2 vrvsgmhCagCaakvekvLselpgVesvkvdlatktvtVegdaes.tklrkiieaiekagyk 62 
                 +rv gm C++C+ +v+++L++++gV+sv vdl + + +V  +++  +    +iea++kag++
  KOO21966.1 182 LRVTGMVCESCEDTVKRALAAVDGVQSVRVDLPKEESEVGCVPTVgA--QVLIEALRKAGHD 241
                 79******************************************944..77********985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (245 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       718  (0.0400469); expected 358.6 (0.02)
Passed bias filter:                      482  (0.0268838); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.42u 0.24s 00:00:00.65 Elapsed: 00:00:00.38
# Mc/sec: 1916.30
//
Query:       KOO21967.1  [L=192]
Description: hypothetical protein Ctob_000289 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.7e-10   40.3  13.9    3.2e-10   40.1  13.9    1.1  1  TRAM_LAG1_CLN8  TLC domain


Domain annotation for each model (and alignments):
>> TRAM_LAG1_CLN8  TLC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.1  13.9   1.8e-14   3.2e-10      62     196 ..      35     168 ..       9     170 .. 0.85

  Alignments for each domain:
  == domain 1  score: 40.1 bits;  conditional E-value: 1.8e-14
  TRAM_LAG1_CLN8  62 vlllyekkrkdfvemliHhiitlvllvlsyvrnlgrvglvvlllhelsdpflnlrkilsylkkkskssklvlfngllfllsFfvcRlvllpylil 156
                     +  +y k        ++Hh++++v+++l+++++ + ++++   l+e++++ l+l+ il  ++ k  ++ l++ n l++ + F+++R++ + ++ +
      KOO21967.1  35 LYCFYGKE----LFIFAHHVLGIVVVSLALYSGTWGYFVSWCGLAEFTNMPLSLHTILGIAGLK--KHPLYAPNVLVLWAGFLMTRVISMAFCAW 123
                     33333322....4589*********************************************666..44666667899999*************** PP

  TRAM_LAG1_CLN8 157 lsildvaklslstap......lwlpliflilllvLqllnlyWfyli 196
                     + ++d +   l++ +      + l +++l ++++L  + + Wf++i
      KOO21967.1 124 RLSRDLFV-TLPELSalervnPVLRYLLLPSNIFLWGISCHWFMKI 168
                     ****9995.444434689999***********************99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (192 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       399  (0.0222544); expected 358.6 (0.02)
Passed bias filter:                      209  (0.0116571); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.24s 00:00:00.63 Elapsed: 00:00:00.39
# Mc/sec: 1462.90
//
Query:       KOO21968.1  [L=61]
Description: hypothetical protein Ctob_000281 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (61 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       493  (0.0274974); expected 358.6 (0.02)
Passed bias filter:                      352  (0.019633); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.23s 00:00:00.56 Elapsed: 00:00:00.37
# Mc/sec: 500.59
//
Query:       KOO21969.1  [L=373]
Description: hypothetical protein Ctob_000282 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (373 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       472  (0.0263261); expected 358.6 (0.02)
Passed bias filter:                      408  (0.0227564); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.48u 0.23s 00:00:00.71 Elapsed: 00:00:00.41
# Mc/sec: 2757.84
//
Query:       KOO21970.1  [L=311]
Description: hypothetical protein Ctob_000283 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.6e-10   38.5   9.3     0.0063   16.5   0.4    5.2  5  LRR_6     Leucine Rich repeat
    0.00019   21.7   4.1       0.65   10.5   0.1    3.9  4  LRR_4     Leucine Rich repeats (2 copies)
  ------ inclusion threshold ------
      0.021   14.6   0.2         32    4.4   0.0    4.0  4  LRR_8     Leucine rich repeat
       0.39   11.4   5.8         21    6.1   0.0    4.4  5  LRR_1     Leucine Rich Repeat


Domain annotation for each model (and alignments):
>> LRR_6  Leucine Rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.8   0.0   2.1e-05     0.093       4      23 ..     140     159 ..     138     159 .. 0.93
   2 !    8.4   0.1   0.00054       2.4       4      18 ..     204     218 ..     201     219 .. 0.92
   3 ?    1.4   0.2     0.093   4.2e+02       8      24 .]     239     255 ..     236     255 .. 0.79
   4 !   16.5   0.4   1.4e-06    0.0063       4      24 .]     265     285 ..     264     285 .. 0.94
   5 ?    0.3   0.0      0.22   9.7e+02       5      15 ..     296     306 ..     293     307 .. 0.85

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 2.1e-05
       LRR_6   4 hLteLdLsgNdIgDeGaeaL 23 
                 h+teL+ s N +g++G+ a+
  KOO21970.1 140 HVTELEFSRNPLGNAGLLAF 159
                 99***************986 PP

  == domain 2  score: 8.4 bits;  conditional E-value: 0.00054
       LRR_6   4 hLteLdLsgNdIgDe 18 
                 +L+ L L+g+++gDe
  KOO21970.1 204 NLRVLVLNGCQLGDE 218
                 79************9 PP

  == domain 3  score: 1.4 bits;  conditional E-value: 0.093
       LRR_6   8 LdLsgNdIgDeGaeaLa 24 
                 L+  +N++g++ + aL+
  KOO21970.1 239 LSCVDNELGNDSLAALS 255
                 55569********9996 PP

  == domain 4  score: 16.5 bits;  conditional E-value: 1.4e-06
       LRR_6   4 hLteLdLsgNdIgDeGaeaLa 24 
                 +L +L+L +Nd+ DeG+e La
  KOO21970.1 265 KLLHLNLGSNDVADEGCEGLA 285
                 699***************997 PP

  == domain 5  score: 0.3 bits;  conditional E-value: 0.22
       LRR_6   5 LteLdLsgNdI 15 
                 L +L+L+ N++
  KOO21970.1 296 LIHLSLARNQV 306
                 789******96 PP

>> LRR_4  Leucine Rich repeats (2 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.0      0.48   2.2e+03       3      23 ..     141     160 ..     137     163 .. 0.69
   2 !   10.5   0.1   0.00014      0.65       2      33 ..     204     244 ..     203     248 .. 0.74
   3 !    8.7   0.3   0.00053       2.4       3      39 ..     236     276 ..     234     285 .. 0.82
   4 ?    2.6   0.0     0.045     2e+02       3      14 ..     296     307 ..     294     309 .. 0.86

  Alignments for each domain:
  == domain 1  score: -0.7 bits;  conditional E-value: 0.48
                 --EEE--SS---E-S-HHH-T CS
       LRR_4   3 LevLdLsnNqltdiplleklp 23 
                  ++L +s N l   +ll+ ++
  KOO21970.1 141 VTELEFSRNPLGNAGLLA-FT 160
                 567788877777766666.55 PP

  == domain 2  score: 10.5 bits;  conditional E-value: 0.00014
                 S--EEE--SS---E-S-..HH......H.-TT--EEE-.-S CS
       LRR_4   2 nLevLdLsnNqltdipl..le......k.lpnLkeLdLsgN 33 
                 nL+vL L+++ql d ++  +         +p L++L++ +N
  KOO21970.1 204 NLRVLVLNGCQLGDESFvrFVgavhqhTlFPILEHLSCVDN 244
                 9*************999653355655544555888888777 PP

  == domain 3  score: 8.7 bits;  conditional E-value: 0.00053
                 --EEE--SS---E-S-HH.........H-TT--EEE-.-S-----G CS
       LRR_4   3 LevLdLsnNqltdiplle.........klpnLkeLdLsgNnlitdl 39 
                 Le+L++ +N l   ++l+         ++ +L +L+L +N    d+
  KOO21970.1 236 LEHLSCVDNELG-NDSLAalsvavqggSFEKLLHLNLGSN----DV 276
                 89*****99999.557555668888956*********778....65 PP

  == domain 4  score: 2.6 bits;  conditional E-value: 0.045
                 --EEE--SS--- CS
       LRR_4   3 LevLdLsnNqlt 14 
                 L++L+L+ Nq+ 
  KOO21970.1 296 LIHLSLARNQVA 307
                 99*****99985 PP

>> LRR_8  Leucine rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.3   0.0      0.21   9.2e+02      23      60 ..     137     150 ..     132     153 .. 0.56
   2 ?    2.9   0.1      0.02        91      47      61 .]     201     215 ..     195     215 .. 0.88
   3 ?    4.4   0.0    0.0071        32      23      35 ..     261     274 ..     245     286 .. 0.74
   4 ?    1.0   0.0     0.082   3.7e+02      23      60 ..     292     305 ..     287     307 .. 0.59

  Alignments for each domain:
  == domain 1  score: -0.3 bits;  conditional E-value: 0.21
                 T-TT--EEE--SS---GGGGGGGTT--S-.EEE--SS- CS
       LRR_8  23 glsnLkvLdLsnNllttlspgafsgLpsLrsLdLsgNr 60 
                 ++ ++++L+ s+N                        +
  KOO21970.1 137 DMAHVTELEFSRN------------------------P 150
                 4555555555555........................4 PP

  == domain 2  score: 2.9 bits;  conditional E-value: 0.02
                 T--S-.EEE--SS-- CS
       LRR_8  47 gLpsLrsLdLsgNrL 61 
                 +L +Lr L L+g++L
  KOO21970.1 201 QLVNLRVLVLNGCQL 215
                 7999******99997 PP

  == domain 3  score: 4.4 bits;  conditional E-value: 0.0071
                 T.-TT--EEE--SS CS
       LRR_8  23 g.lsnLkvLdLsnN 35 
                 g +++L +L+L++N
  KOO21970.1 261 GsFEKLLHLNLGSN 274
                 44679999999999 PP

  == domain 4  score: 1.0 bits;  conditional E-value: 0.082
                 T-TT--EEE--SS---GGGGGGGTT--S-.EEE--SS- CS
       LRR_8  23 glsnLkvLdLsnNllttlspgafsgLpsLrsLdLsgNr 60 
                 gl  L +L+L +N                        +
  KOO21970.1 292 GLACLIHLSLARN------------------------Q 305
                 3444555555555........................4 PP

>> LRR_1  Leucine Rich Repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.6   0.0      0.32   1.5e+03       3      13 ..     142     152 ..     140     168 .. 0.77
   2 ?    6.1   0.0    0.0048        21       1      14 [.     204     217 ..     204     226 .. 0.84
   3 ?   -1.3   0.1       1.3     6e+03       2      13 ..     236     247 ..     236     256 .. 0.66
   4 ?    3.5   0.3     0.037   1.6e+02       1      12 [.     265     276 ..     265     299 .. 0.68
   5 ?   -1.2   0.0       1.3   5.7e+03       2      11 ..     296     305 ..     295     307 .. 0.86

  Alignments for each domain:
  == domain 1  score: 0.6 bits;  conditional E-value: 0.32
       LRR_1   3 rhLdLsnnpll 13 
                 ++L  s+npl+
  KOO21970.1 142 TELEFSRNPLG 152
                 68999****94 PP

  == domain 2  score: 6.1 bits;  conditional E-value: 0.0048
       LRR_1   1 nLrhLdLsnnpllg 14 
                 nLr+L L++++l++
  KOO21970.1 204 NLRVLVLNGCQLGD 217
                 8**********954 PP

  == domain 3  score: -1.3 bits;  conditional E-value: 1.3
       LRR_1   2 LrhLdLsnnpll 13 
                 L+hL   +n l+
  KOO21970.1 236 LEHLSCVDNELG 247
                 899987777764 PP

  == domain 4  score: 3.5 bits;  conditional E-value: 0.037
       LRR_1   1 nLrhLdLsnnpl 12 
                 +L hL+L++n  
  KOO21970.1 265 KLLHLNLGSNDV 276
                 688****99985 PP

  == domain 5  score: -1.2 bits;  conditional E-value: 1.3
       LRR_1   2 LrhLdLsnnp 11 
                 L hL L +n+
  KOO21970.1 296 LIHLSLARNQ 305
                 889***9985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (311 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       269  (0.0150036); expected 358.6 (0.02)
Passed bias filter:                      239  (0.0133304); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.41u 0.24s 00:00:00.64 Elapsed: 00:00:00.39
# Mc/sec: 2394.89
//
Query:       KOO21971.1  [L=225]
Description: hypothetical protein Ctob_000284 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      1e-09   38.7   0.0    1.4e-09   38.2   0.0    1.2  1  Methyltransf_21  Methyltransferase FkbM domain


Domain annotation for each model (and alignments):
>> Methyltransf_21  Methyltransferase FkbM domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.2   0.0   7.8e-14   1.4e-09       1     172 [.      36     215 ..      36     216 .. 0.66

  Alignments for each domain:
  == domain 1  score: 38.2 bits;  conditional E-value: 7.8e-14
  Methyltransf_21   1 dvGanigvwdsfanltarlcggggevlaiEPvpns........lpkfeklranll......tlavgndvglyelivegksggkyfpfavgdtng 80 
                      d+Ganig  +  +++   l+++++ v+++EP  ++        l+  e+ +   +      +l++g++ +   l++       + ++a     g
       KOO21971.1  36 DAGANIG--ACSLHM---LLASEASVISFEPGASNlfyassslLRLHEQGTIAATaraalvPLGLGRNASGQLLHQ-------AIGNAGHAVIG 117
                      89*****..555555...789**********999877766665333333333333666666777775532222222.......34444444444 PP

  Methyltransf_21  81 fstssvlggedaryievpvvtldsfleei.....kksridllkiDvEGaElevLeGaqkglkrcqpnlivvEvhkfk.efetelfdeirqflre 168
                      +   +     + + + v+ ++ld++l +       ++ i+llk+DvEG+E evL+G + +l    ++ i+vEv +     ++ +  e++ +l  
       KOO21971.1 118 HKPVQFAPLGHLSPQAVRIERLDDVLWPVsqrsePPPPIHLLKLDVEGFECEVLRGMSSLLAAGAVRAIKVEVFDMLlRLQGCSAAELLGMLLA 211
                      4444444345778999999999966655541114567799****************99999999999999998766644444667777777777 PP

  Methyltransf_21 169 cgyr 172
                      +g++
       KOO21971.1 212 AGFE 215
                      7776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (225 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       208  (0.0116013); expected 358.6 (0.02)
Passed bias filter:                      180  (0.0100396); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.25s 00:00:00.64 Elapsed: 00:00:00.39
# Mc/sec: 1733.27
//
Query:       KOO21972.1  [L=578]
Description: 26s proteasome non-ATPase regulatory subunit 12 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.1e-15   56.5   1.7    5.1e-15   55.3   1.7    1.7  1  RPN5_C           26S proteasome regulatory subunit RPN5 C-ter
    8.8e-15   55.1   0.4    2.2e-14   53.8   0.1    1.9  2  PCI              PCI domain
  ------ inclusion threshold ------
       0.13   12.5   0.0       0.26   11.5   0.0    1.5  1  AcetDehyd-dimer  Prokaryotic acetaldehyde dehydrogenase, dime


Domain annotation for each model (and alignments):
>> RPN5_C  26S proteasome regulatory subunit RPN5 C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.3   1.7   8.5e-19   5.1e-15       1      33 []     543     575 ..     543     575 .. 0.98

  Alignments for each domain:
  == domain 1  score: 55.3 bits;  conditional E-value: 8.5e-19
      RPN5_C   1 NevLNeWssninkLLelvekttHLInKEeMvhk 33 
                 N +LN+Wss+i++LL ++e  +HLI+KE+Mvhk
  KOO21972.1 543 NALLNDWSSDIGTLLTKLEGACHLIHKENMVHK 575
                 89******************************8 PP

>> PCI  PCI domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.0       1.6   9.5e+03      11      37 ..     324     350 ..     319     366 .. 0.63
   2 !   53.8   0.1   3.7e-18   2.2e-14       3     104 ..     431     537 ..     429     538 .. 0.89

  Alignments for each domain:
  == domain 1  score: -2.8 bits;  conditional E-value: 1.6
                 HHTSHHHHHHHHHHHHHHHHHHTTHHH CS
         PCI  11 rsgnlsgfseelkdleeelladdglaq 37 
                 ++g++ +++ + k+   ++++d++l++
  KOO21972.1 324 ETGDFIRANIMSKKINVKVFNDEELED 350
                 566666666666666666666666666 PP

  == domain 2  score: 53.8 bits;  conditional E-value: 3.7e-18
                 HHHHHHHHHHTSHHHHHHHHHHHHHHHHHHTTHHH......HHHHHHHHHHHHHHHHHHHCESEEEHHHHHHHHTSSHHHHHHHHHHHHHTTSSSEEEE CS
         PCI   3 ysdllkalrsgnlsgfseelkdleeelladdglaq......llesLekkvrerllrqvskiyssislerlaklldlsvdevEkilvklIrdgeirakid 95 
                 y++l++ ++++++ +f e  + l ++ l++ g+ +      +l+ ++k+v+e++++ ++k+y +i+++rl + l+l+   +E+ l++++ +++++a+id
  KOO21972.1 431 YKELVRLFTTKEVFAFGEVKAAL-QTELEKLGTFDakevelMLSTFHKRVTEHNIEVIAKYYARITMKRLGEHLELPLALMEEQLCEMVTKKQVYARID 528
                 8999999*****99999999999.44444455555566666********************************************************** PP

                 TTTTEEEEC CS
         PCI  96 qesgivvfk 104
                 ++ giv f+
  KOO21972.1 529 RPRGIVTFQ 537
                 ******997 PP

>> AcetDehyd-dimer  Prokaryotic acetaldehyde dehydrogenase, dimerisation
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   4.4e-05      0.26      70     120 ..     207     254 ..     143     275 .. 0.79

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 4.4e-05
  AcetDehyd-dimer  70 aepplimrdtvyalveeeadeeaieesveemveevqeyvPGYrlkqevqfd 120
                      a+  + +++t+++l++   ++++i+e+v +mv++  ey  G+++ ++ ++ 
       KOO21972.1 207 AKDYPRLNETITMLAK---RRAQIKEAVGAMVRKAMEYLEGFSVAEKLALI 254
                      4555678999**9999...789**********************9987665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (578 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       583  (0.0325172); expected 358.6 (0.02)
Passed bias filter:                      450  (0.025099); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.53u 0.26s 00:00:00.79 Elapsed: 00:00:00.40
# Mc/sec: 4320.82
//
Query:       KOO21973.1  [L=541]
Description: wd repeat-containing protein 76-like protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.8e-12   47.5  10.5    0.00069   20.4   0.1    5.5  6  WD40         WD domain, G-beta repeat
    0.00054   20.0   0.3    0.00097   19.2   0.3    1.3  1  DUF962       Protein of unknown function (DUF962)
    0.00096   19.4   0.0        6.9    7.1   0.0    4.3  4  ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain
  ------ inclusion threshold ------
       0.05   12.6   0.0       0.59    9.0   0.0    2.3  2  Ge1_WD40     WD40 region of Ge1, enhancer of mRNA-decapping p
       0.11   12.4   3.5       0.23   11.5   3.5    1.5  1  Trypan_PARP  Procyclic acidic repetitive protein (PARP)


Domain annotation for each model (and alignments):
>> WD40  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   0.1         5   1.8e+04      13      32 ..     160     173 ..     148     174 .. 0.48
   2 ?   -1.6   0.1       1.6   5.9e+03      21      38 .]     232     250 ..     221     250 .. 0.61
   3 !   11.3   0.0   0.00014      0.49       2      35 ..     257     292 ..     256     293 .. 0.88
   4 !   20.4   0.1   1.9e-07   0.00069       7      38 .]     358     391 ..     355     391 .. 0.86
   5 !    9.0   0.0   0.00077       2.8       7      37 ..     405     435 ..     398     435 .. 0.80
   6 !    9.3   0.3   0.00061       2.2      10      37 ..     508     539 ..     495     540 .. 0.86

  Alignments for each domain:
  == domain 1  score: -3.4 bits;  conditional E-value: 5
                 EEEEEEETTSSEEEEE.ETTS CS
        WD40  13 vtslafspdgawlasG.sdDg 32 
                    l      ++la G s D 
  KOO21973.1 160 LARL------SMLA-GsSSDT 173
                 4444......5576.423376 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 1.6
                 TSSEEE.EEETTSEEEEEE CS
        WD40  21 dgawla.sGsdDgtvriWd 38 
                 d ++l+ +G+  g v +Wd
  KOO21973.1 232 DTKLLVaAGDTWGRVGLWD 250
                 4455551555577777787 PP

  == domain 3  score: 11.3 bits;  conditional E-value: 0.00014
                 EEEEEEESS.SSEEEEEEETTSSE.EEEEETTSEEE CS
        WD40   2 qclrtltGH.ssvtslafspdgaw.lasGsdDgtvr 35 
                 q++ t++ H  +vt+l++ p+ +  l+s+s Dg vr
  KOO21973.1 257 QPVVTFSPHsRPVTGLRVLPSAPHqLLSCSQDGAVR 292
                 68889****555*****99999999889*****998 PP

  == domain 4  score: 20.4 bits;  conditional E-value: 1.9e-07
                 EESS.SSEEEEEEETTSSEEE.EEETTSEEEEEE CS
        WD40   7 ltGH.ssvtslafspdgawla.sGsdDgtvriWd 38 
                 + +H + + +++fsp ++ l+ s+s D++vr+Wd
  KOO21973.1 358 WQAHdKKIFGVDFSPLQPCLLaSASLDRSVRLWD 391
                 679*888************8526799*******9 PP

  == domain 5  score: 9.0 bits;  conditional E-value: 0.00077
                 EESS.SSEEEEEEETTSSEEEEEETTSEEEEE CS
        WD40   7 ltGH.ssvtslafspdgawlasGsdDgtvriW 37 
                 l  H  svt+ +fsp+g+ l++ + D  +r++
  KOO21973.1 405 L-SHgLSVTAARFSPSGTKLLTTCNDDLLRVY 435
                 5.48556************9977779999986 PP

  == domain 6  score: 9.3 bits;  conditional E-value: 0.00061
                 SSSEEEEE....EETTSSEEEEE.ETTSEEEEE CS
        WD40  10 Hssvtsla....fspdgawlasG.sdDgtvriW 37 
                 H++vts+     ++p ++ la++ s  g+v +W
  KOO21973.1 508 HDHVTSVIsllaWHPTKPVLAASnS-SGKVFLW 539
                 766888888889*********9966.******* PP

>> DUF962  Protein of unknown function (DUF962)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.2   0.3   2.7e-07   0.00097      10      68 ..      16      76 ..       8      81 .. 0.80

  Alignments for each domain:
  == domain 1  score: 19.2 bits;  conditional E-value: 2.7e-07
      DUF962 10 fYlaeHsnpinrllHfigvplilltvlllllraklkl..llalfvvgyifafvGHfvfEkr 68
                 +l eH++p+n++lH++g+ + l++v ++l+++ +++  ll+ ++v  +   +GH ++E++
  KOO21973.1 16 VFLPEHRHPVNVALHMLGTFAGLAFVPVVLAMPLAWYpaLLLFPLVHAAPGLLGHRLLERN 76
                57889****************99999888877765432256667777778899***99998 PP

>> ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.0      0.56     2e+03      41      71 ..     223     255 ..     219     295 .. 0.66
   2 ?    3.5   0.0     0.025        91      49      72 ..     330     353 ..     326     371 .. 0.71
   3 ?    1.7   0.0     0.087   3.1e+02      35      66 ..     405     436 ..     381     440 .. 0.83
   4 !    7.1   0.0    0.0019       6.9      31      64 ..     505     538 ..     482     540 .. 0.80

  Alignments for each domain:
  == domain 1  score: -0.8 bits;  conditional E-value: 0.56
  ANAPC4_WD40  41 vrsLaWkpdgklLavaysd..gevrlldaesgk 71 
                  + sL+ +p ++ L va  d  g+v l d+  g+
   KOO21973.1 223 IFSLEMHPADTKLLVAAGDtwGRVGLWDVDAGD 255
                  557777777777777776633588887776653 PP

  == domain 2  score: 3.5 bits;  conditional E-value: 0.025
  ANAPC4_WD40  49 dgklLavaysdgevrlldaesgkv 72 
                  +g  La+a sdg v l+d+     
   KOO21973.1 330 EGGALAIARSDGVVVLMDSRVSSA 353
                  6889*************9975443 PP

  == domain 3  score: 1.7 bits;  conditional E-value: 0.087
  ANAPC4_WD40  35 dkedsevrsLaWkpdgklLavaysdgevrlld 66 
                   +++ +v++ +++p+g+ L   ++d  +r++ 
   KOO21973.1 405 LSHGLSVTAARFSPSGTKLLTTCNDDLLRVYA 436
                  578999*******************9998876 PP

  == domain 4  score: 7.1 bits;  conditional E-value: 0.0019
  ANAPC4_WD40  31 tleedkedsevrsLaWkpdgklLavaysdgevrl 64 
                   le+d+  s ++ LaW+p   +La + s g+v l
   KOO21973.1 505 RLEHDHVTSVISLLAWHPTKPVLAASNSSGKVFL 538
                  4477788888999*****************9965 PP

>> Ge1_WD40  WD40 region of Ge1, enhancer of mRNA-decapping protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.3   0.0      0.11     4e+02     197     234 ..     329     362 ..     324     372 .. 0.71
   2 ?    9.0   0.0   0.00016      0.59     181     214 ..     402     435 ..     382     438 .. 0.87

  Alignments for each domain:
  == domain 1  score: -0.3 bits;  conditional E-value: 0.11
    Ge1_WD40 197 pdGtalatasedGevkffqvyledeeeprCLheWkPhd 234
                  +G ala+a +dG+v      +  + +      W+ hd
  KOO21973.1 329 GEGGALAIARSDGVVV----LMDSRVSSAGASSWQAHD 362
                 5799*********994....444444445555566665 PP

  == domain 2  score: 9.0 bits;  conditional E-value: 0.00016
    Ge1_WD40 181 llkieehsliveaafspdGtalatasedGevkff 214
                 l+++++   ++ a fsp Gt l t+++d +++ +
  KOO21973.1 402 LVELSHGLSVTAARFSPSGTKLLTTCNDDLLRVY 435
                 677777789********************99988 PP

>> Trypan_PARP  Procyclic acidic repetitive protein (PARP)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   3.5   6.3e-05      0.23      74     122 ..      95     142 ..      80     154 .. 0.64

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 6.3e-05
  Trypan_PARP  74 epepepetepeeepepepepepepepepepepepepepgaatlksvalp 122
                  e +p p        + +pe +p p+ e  p p pepep    l sv l 
   KOO21973.1  95 E-KPAPRVRSLRAQNLDPEGKPLPNKEVLPSPTPEPEPKRQRLASVPLD 142
                  2.34444444455555566666666666677888888888888888775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (541 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       280  (0.0156172); expected 358.6 (0.02)
Passed bias filter:                      230  (0.0128284); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.50u 0.25s 00:00:00.75 Elapsed: 00:00:00.40
# Mc/sec: 4036.74
//
Query:       KOO21974.1  [L=74]
Description: hypothetical protein Ctob_000287, partial [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (74 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       260  (0.0145016); expected 358.6 (0.02)
Passed bias filter:                      180  (0.0100396); expected 358.6 (0.02)
Passed Vit filter:                        10  (0.000557756); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.23s 00:00:00.57 Elapsed: 00:00:00.37
# Mc/sec: 593.50
//
Query:       KOO21975.1  [L=420]
Description: tetracycline-efflux transporter [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.8e-17   63.3  20.3    1.8e-17   63.3  20.3    2.0  2  MFS_1     Major Facilitator Superfamily
  ------ inclusion threshold ------
        2.6    8.6   6.3        1.8    9.1   2.5    2.9  2  LRV       Leucine rich repeat variant


Domain annotation for each model (and alignments):
>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.3  20.3   2.1e-21   1.8e-17       5     306 ..       2     308 ..       1     329 [. 0.81
   2 ?   -3.4   5.1      0.38   3.4e+03     149     173 ..     359     382 ..     305     416 .. 0.64

  Alignments for each domain:
  == domain 1  score: 63.3 bits;  conditional E-value: 2.1e-21
       MFS_1   5 aflsalarsilgpalplal....aedlgispseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalg.lllllfasslwlllvlrvlqGlg 98 
                 +fl+ la ++++ alp+al    ++dl  +++++g l ++ al+ ++ ++ lGrlsd +Gr+++l+ + +l +l  ++++l  +  ++l+++ vl G+ 
  KOO21975.1   2 VFLHVLANALIAQALPQALriakNNDLVRTATALGKLGSIAALLDILITPQLGRLSDTIGRKPLLIGAPILGCLVrAAVALR-PATPFLVAVKVLGGVI 99 
                 699999999******998867777777799999999***************************9999999999998888883.56679*********** PP

       MFS_1  99 agalfpagaaliadwfpk..eergraigllsagfslGailgpllggllasslgWravfyilaivsllafvlfllllpeepperkrkspkeeekgtgpap 195
                 +++++ a+ a++ad   +  +  +  +gl+sa+++ ++++g+ +gg l+ +   r+++ + a ++ ++++l+ + ++e++++ +r++ +++      ap
  KOO21975.1 100 SATYMVAMRAALADGHRDdpPTLTGRLGLVSAASGGAYAIGMYAGGELV-ARQLRLPYAVSASLLGILAILVCFGFRETHRPAARVPFRPK------AP 191
                 **************9987557****************************.6689****************999999999999999988888......89 PP

       MFS_1 196 lvpawkallkdpvlwillialllfffgfsg....lltllplylqevlglsglllaglllallalvgailallagrlsdrlgrrrrlllallllllaalg 290
                 +v  +  l+++      l +l+++  ++++    +  +  +++++ +g+  + + gl+ +l++l+g+ ++l++   ++ lg r  +lla ++++l+ l+
  KOO21975.1 192 AVG-FVRLFTSGG---TLRGLCTVN-ALQLctvsMGDTWQVFARQLRGWE-AAQCGLFGSLTGLGGMLASLCVRSSVRLLGTRGHTLLATGCVMLTELL 284
                 999.999999993...444444443.33333222444444468*******.8**************999999999999999988888888888888888 PP

       MFS_1 291 lallavtssavllll........v 306
                 l  +  ++ a+++l+         
  KOO21975.1 285 LGSITSPTRAFVALVpnwigrtqT 308
                 887777766666555444444441 PP

  == domain 2  score: -3.4 bits;  conditional E-value: 0.38
       MFS_1 149 g.Wravfyilaivsllafvlfllllp 173
                 g   ++fy++a+v+ la +l  +ll 
  KOO21975.1 359 GvPALPFYFAAAVGSLAWLL--VLLS 382
                 22334477777777776443..3332 PP

>> LRV  Leucine rich repeat variant
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.1   2.5    0.0002       1.8       3      14 ..      76      87 ..      75      87 .. 0.95
   2 ?   -2.7   0.1       1.2     1e+04       6      14 ..     147     155 ..     146     155 .. 0.80

  Alignments for each domain:
  == domain 1  score: 9.1 bits;  conditional E-value: 0.0002
         LRV  3 VRaaVArrPdlP 14
                VRaaVA+rP++P
  KOO21975.1 76 VRAAVALRPATP 87
                9**********9 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 1.2
         LRV   6 aVArrPdlP 14 
                  VAr  +lP
  KOO21975.1 147 LVARQLRLP 155
                 599998887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (420 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       461  (0.0257125); expected 358.6 (0.02)
Passed bias filter:                      278  (0.0155056); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.49u 0.26s 00:00:00.75 Elapsed: 00:00:00.42
# Mc/sec: 2970.91
//
Query:       KOO21976.1  [L=1770]
Description: voltage-gated sodium channel [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
   2.9e-190  629.3  64.3    8.8e-55  185.6   7.1    4.5  4  Ion_trans      Ion transport protein
    1.6e-22   79.4   0.0      3e-22   78.5   0.0    1.4  1  Thioredoxin    Thioredoxin
    8.9e-19   67.6   1.7    1.9e-18   66.5   0.0    2.4  2  TPR_20         Tetratricopeptide repeat
    2.5e-10   39.6  63.5    2.3e-05   23.3   1.2    8.6  9  PKD_channel    Polycystin cation channel
    1.1e-07   31.6   0.0    2.6e-07   30.3   0.0    1.7  1  GPHH           Voltage-dependent L-type calcium channel, IQ-a
    1.6e-05   24.8   0.0    3.2e-05   23.9   0.0    1.5  1  AhpC-TSA       AhpC/TSA family
    1.6e-05   25.3   0.0    5.8e-05   23.5   0.0    1.9  1  Thioredoxin_2  Thioredoxin-like domain
    0.00057   20.2   0.0     0.0034   17.7   0.0    2.2  2  Thioredoxin_8  Thioredoxin-like
  ------ inclusion threshold ------
      0.016   14.9   0.0      0.041   13.6   0.0    1.6  1  Redoxin        Redoxin
        1.5    9.4  23.4        9.9    6.8   0.1    5.2  5  DUF3935        Protein of unknown function (DUF3935)
        3.4    8.2   7.1        1.5    9.4   0.5    2.7  2  TPR_19         Tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> Ion_trans  Ion transport protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  137.8   2.4   2.2e-43   3.5e-40       2     233 ..     117     333 ..     116     338 .. 0.89
   2 !  166.1  20.7   4.8e-52   7.8e-49       4     243 ..     427     657 ..     424     659 .. 0.96
   3 !  185.6   7.1   5.4e-58   8.8e-55       3     244 ..     816    1088 ..     815    1089 .. 0.94
   4 !  157.5  10.4     2e-49   3.2e-46       1     239 [.    1140    1389 ..    1140    1395 .. 0.92

  Alignments for each domain:
  == domain 1  score: 137.8 bits;  conditional E-value: 2.2e-43
                 HHHHHHHHHHHHHHHHHHHCCCSSSSHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHTH.HHHHHHCHSHHHHHHHHHHHHHHHHH.HHHHHHHHHHHHH CS
   Ion_trans   2 svfelfilllillncvflaletyfpedelektileilelvftaiftlemllkilalgl.likkrYlrdpwnilDflvvlpsllsl.vlseesllllsvl 98 
                 ++fe + l +++lncv la+    p+d++  +  + +e   t  ft+e++lk++a+gl  ++  Yl d+wn lDf+vvl+s+l l ++   sl +ls +
  KOO21976.1 117 PWFERLTLAVVVLNCVDLAM--LGPPDRPHAEYHDLIEDGATLYFTVELFLKVVAMGLiGHDDAYLADYWNQLDFVVVLTSWLLLlFP---SLDNLSGM 210
                 8*******************..55554444478899999999****************999999*******************99544...69****** PP

                 HHHGGGGGGHHHCHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCCCCSCCSTSSSTTTSSSSSSHHHHHHHHHHHHTTSSHHH CS
   Ion_trans  99 rlfrvlrllklisrleglrtlvtalirsvkdllnvlllllvvlfifaligvqlfkgklreknecaktwenpnngntnFdnfftallwlfrlmttegwgd 197
                 r++r lr+l++++rl+ l+  v +l+ s+++l +v+ l+++++++f+++gvq+f+g+l+   +c++ +++        d  +++ + +++     gw++
  KOO21976.1 211 RAVRALRPLRAVNRLPELKQEVETLLVSLPQLADVAQLSAFIMVVFGVLGVQMFAGTLH--YRCYEVGATR-----PIDASGDSRIVTLE-----GWTE 297
                 ***********************************************************..3343333333.....36677777666555.....**** PP

                 HHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
   Ion_trans 198 ilyatldekskvaliyfvifiilgsflllNlliavi 233
                 i+y  +++++ +a++y v+++++gsf++lNl++av+
  KOO21976.1 298 IMYMLERASGPLACVYCVMIVVFGSFYVLNLFLAVM 333
                 ***********************************9 PP

  == domain 2  score: 166.1 bits;  conditional E-value: 4.8e-52
                 HHHHHHHHHHHHHHHHHCCCSSSSHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHCHSHHHHHHHHHHHHHHHHHHHHH..HHHHHHHHHHH CS
   Ion_trans   4 felfilllillncvflaletyfpedelektileilelvftaiftlemllkilalgllikkrYlrdpwnilDflvvlpsllslvlse..esllllsvlrl 100
                 f+ fil li+ +c++l +e+y++  e++ +++  +++v t +f lemllk  alg+   + Y++d +n++D ++v++sl+++v++   ++l++++++rl
  KOO21976.1 427 FQKFILALIIASCLLLSMEHYPMTPEET-EFFAEANVVMTLLFSLEMLLKHCALGC---GGYWSDAFNRFDGTIVTISLVDIVAEFywSELIVFRAFRL 521
                 899*********************8888.***************************...***********************77667789********* PP

                 HGGGGGGHHHCHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCCCCSCCSTSSSTTTSSSSSSHHHHHHHHHHHHTTSSHHHHH CS
   Ion_trans 101 frvlrllklisrleglrtlvtalirsvkdllnvlllllvvlfifaligvqlfkgklreknecaktwenpnngntnFdnfftallwlfrlmttegwgdil 199
                 frv+r+++l++ +e+lr l++al +s+ +l+++++l+++++fifal+g+qlf++++        + + ++ ++ nFd++  +++++f ++  e+w+++ 
  KOO21976.1 522 FRVFRIFRLVRVWESLRELLAALYNSLVQLFYLMILFALFIFIFALLGMQLFGDQFT-------EPKFAEPPRANFDSITFSMITVFIVANLEDWNTVR 613
                 ****************************************************99999.......455556699************************** PP

                 HHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
   Ion_trans 200 yatldekskvaliyfvifiilgsflllNlliaviadnfqelter 243
                  +t+++ + v++ +fv++i+l +f++lNl++a  + +f+++  +
  KOO21976.1 614 RNTERAVGVVSVPFFVALIVLLNFIMLNLVVATLIGTFDQQAAK 657
                 ***************************************99876 PP

  == domain 3  score: 185.6 bits;  conditional E-value: 5.4e-58
                  HHHHHHHHHHHHHHHHHHCCCSSSSHHHHC.HHHHHHHHHHHHHHHHHHHHHHHHHTH.HHHHHHCHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
   Ion_trans    3 vfelfilllillncvflaletyfpedelek.tileilelvftaiftlemllkilalgl.likkrYlrdpwnilDflvvlpsllslvlseesllllsv 97  
                  +f+ +i+ +i+ +++++a+++++    +e    l  ++l+  +if++e+++k+la+g+   ++ Yl+dpwn lDflvv+ +llsl++   s ++ ++
  KOO21976.1  816 SFDNLIISIIIASSIAMAFNSCDLDPASELaARLYGIDLIAMGIFVMELAFKVLAYGFiSTPRAYLQDPWNQLDFLVVTSGLLSLMS---SSPATRM 909 
                  5999********************977777999*************************999************************88...68***** PP

                  HHHHGGGGGGHHHCHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCC..................CC......SCCSTSSST CS
   Ion_trans   98 lrlfrvlrllklisrleglrtlvtalirsvkdllnvlllllvvlfifaligvqlfkgklrek..................ne......caktwenpn 170 
                  lr++rvlr+l+li r++g+rt +  l+r+++ +++v+ ++l++lf+f+++gvqlf+g +  +                   +      +  tw+np 
  KOO21976.1  910 LRVLRVLRPLRLIARSKGMRTAIELLLRAMPRVIDVVAVYLIFLFVFSILGVQLFGGAFASChtptvcslegckdsvlllDRdacnmaEGATWRNP- 1005
                  **************************************************************888888887777666666115566667789**99. PP

                  TTSSSSSSHHHHHHHHHHHHTTSSHHHHHHHHHHHS..........HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
   Ion_trans  171 ngntnFdnfftallwlfrlmttegwgdilyatldek..........skvaliyfvifiilgsflllNlliaviadnfqeltere 244 
                   +  nFd+ ++a+l lf++ t egw+ ++   +d            +  + i+f+++iilgs+lllNl+++v ++ f++++++e
  KOO21976.1 1006 -SSGNFDDTPSAMLLLFEMSTLEGWTAVMFGAIDVVaigeapvrdaNVGNAIFFILWIILGSMLLLNLFVGVLVNVFNQIKQQE 1088
                  .888******************************************************************************97 PP

  == domain 4  score: 157.5 bits;  conditional E-value: 2e-49
                  SHHHHHHHHHHHHHHHHHHHCCCSSSSHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHCHSHHHHHHHHHHHHHHHHH........HHHH CS
   Ion_trans    1 ssvfelfilllillncvflaletyfpedelektileilelvftaiftlemllkilalgllikkrYlrdpwnilDflvvlpsllsl........vlse 89  
                  +++f+  il +il n+v++al+ y  +  ++ + le l+ ++t++f+ e++ ki+alg+    +Y++d wn++Df+vvl+s++++           +
  KOO21976.1 1140 HKFFDACILSVILFNTVLMALDGYGAPPAEK-HTLELLNNACTCVFITEAFCKIVALGC----EYFSDGWNVFDFFVVLVSIADWlihyivilN--S 1229
                  789************************8888.***************************....********************99877777651..1 PP

                  ......HHHHHHHHHHHHGGGGGGHHHCHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCCCCSCCSTSSSTTTSSSSSSHH CS
   Ion_trans   90 ......esllllsvlrlfrvlrllklisrleglrtlvtalirsvkdllnvlllllvvlfifaligvqlfkgklreknecaktwenpnngntnFdnff 180 
                        + l +l+++rl+r+lr l+l+++ ++l+ l+ +l+ s+++l n+l ++l++l++++l+g+qlf g        + +  +  + + nF +f+
  KOO21976.1 1230 sgetnpTLLRVLRIVRLARILRTLRLVKSAQSLKLLLSMLLLSLPALSNILGIYLIMLSMYSLLGMQLF-G--------NVSHGKYLDLDANFCTFG 1317
                  456667889************************************************************.3........3334555567889***** PP

                  HHHHHHHHHHTTSSHHHHHHHHHHHS.............HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
   Ion_trans  181 tallwlfrlmttegwgdilyatldek.............skvaliyfvifiilgsflllNlliaviadnfqe 239 
                   a l+lfr+ t+e w+ ++++++ +              s +a+ +fv++i+l+++++l ++i +i++n+ +
  KOO21976.1 1318 RAALTLFRCSTGESWNGLMHDMMVRPesgkcsdeerncgSILAVPFFVSYIVLSTYIVLKMMIVLIIENYLR 1389
                  *************************9*******************************************965 PP

>> Thioredoxin  Thioredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   78.5   0.0   1.9e-25     3e-22      20     103 .]    1493    1576 ..    1471    1576 .. 0.96

  Alignments for each domain:
  == domain 1  score: 78.5 bits;  conditional E-value: 1.9e-25
                   EEEEEEE-TTSHHHHCHHHHHHHHHHHCTTTSEEEEEETTTSHHHHHHTT-SSSSEEEEEETTEEEEEEESS-HHHHHHHHHHH CS
  Thioredoxin   20 lvlveFyApwCghCkalaPeleklaeelkdkvklakvdvdenedlakkyevegiPtlklfkngkevkkyegarekeklaaflkk 103 
                   +v+++FyA+wCg+Ck+l+P+lekl ++ ++ v+lak++vd+ +++a+ ++v+++Pt++l+++gk v++++g  + +++++f++k
   KOO21976.1 1493 PVILDFYADWCGPCKQLTPKLEKLVTASQGAVRLAKINVDNLPEIAQALQVKSLPTVMLLHAGKLVDQFTGVLPDAQIKQFVDK 1576
                   79******************************************************************************9985 PP

>> TPR_20  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.5       3.3   5.4e+03       5      35 ..     667     696 ..     664     699 .. 0.72
   2 !   66.5   0.0   1.2e-21   1.9e-18       4      88 ..    1682    1767 ..    1679    1768 .. 0.93

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 3.3
      TPR_20   5 apelaeleaalaanpddldarldlAlallaa 35 
                 +++++ l+++ +a+ dd +a+++ A+  +++
  KOO21976.1 667 QEDIELLRDENEAADDD-AAAVEAAESFYKG 696
                 67788888888887777.8888888877665 PP

  == domain 2  score: 66.5 bits;  conditional E-value: 1.2e-21
      TPR_20    4 dapelaeleaalaanpddldarldlAlallaagryeeAleqLleilkr.drkweddaarkqllkifealgsqdplvakyRrkLssl 88  
                    p+ ae++ +l+ +p d+++r++lA++ll ag+++e++e+Ll +l++  ++w+++aa+  llkif++lg++d++++k+Rr+++s 
  KOO21976.1 1682 GGPTEAEMRMTLEGAPRDHATRYALAQKLLGAGQHDESIEELLLVLRKgGKAWNEGAAKGLLLKIFDMLGTTDERAVKGRRRMNSY 1767
                  567788999*************************************9835899******************************986 PP

>> PKD_channel  Polycystin cation channel
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.6   0.1   0.00041      0.66     223     267 ..     157     206 ..     153     218 .. 0.69
   2 ?    1.8   2.9     0.046        74     381     419 ..     291     333 ..     212     338 .. 0.62
   3 ?   -1.6   0.0      0.52   8.4e+02     219     265 ..     462     509 ..     452     517 .. 0.89
   4 !   20.0   9.8   1.4e-07   0.00023     308     423 ..     523     651 ..     512     653 .. 0.78
   5 ?    2.7   0.0     0.025        41     217     260 ..     858     900 ..     839     911 .. 0.69
   6 !    7.9   0.5   0.00067       1.1     306     360 ..     912     966 ..     904     973 .. 0.87
   7 ?   -1.8   3.3      0.58   9.5e+02     398     425 ..    1056    1083 ..    1051    1084 .. 0.87
   8 !    8.4   0.8   0.00045      0.73     221     263 ..    1180    1222 ..    1168    1230 .. 0.87
   9 !   23.3   1.2   1.4e-08   2.3e-05     309     423 ..    1249    1387 ..    1227    1390 .. 0.86

  Alignments for each domain:
  == domain 1  score: 8.6 bits;  conditional E-value: 0.00041
                  HHHHHHHH-----.....---------HHHHHHHHHHHHHHHHHHHHHHH CS
  PKD_channel 223 lyfvveeilkirk.....erasylrsvwnlldlaivvlsvvlivlailre 267
                  lyf+ve +lk+       +  +yl + wn+ld+++v+ s +l+++  l +
   KOO21976.1 157 LYFTVELFLKVVAmgligHDDAYLADYWNQLDFVVVLTSWLLLLFPSLDN 206
                  6677776666544111113369*****************99988766655 PP

  == domain 2  score: 1.8 bits;  conditional E-value: 0.046
                  T---HH....HHHHH-TTHHHHHHHHHHHHHHHHHHHHHHHHH CS
  PKD_channel 381 gdfqyt....elesgnrvLGpllllalvflvifillnlflaii 419
                     ++t     le +   L  ++++++v++  f +lnlfla++
   KOO21976.1 291 TLEGWTeimyMLERASGPLACVYCVMIVVFGSFYVLNLFLAVM 333
                  4445552222356666667777888888888999*******98 PP

  == domain 3  score: -1.6 bits;  conditional E-value: 0.52
                  HHHHHHHHHHHH-------.-------HHHHHHHHHHHHHHHHHHHHH CS
  PKD_channel 219 vvfvlyfvveeilkirker.asylrsvwnlldlaivvlsvvlivlail 265
                  vv+ l+f+ e++lk    +   y ++++n  d  iv +s+v iv  ++
   KOO21976.1 462 VVMTLLFSLEMLLKHCALGcGGYWSDAFNRFDGTIVTISLVDIVAEFY 509
                  899999********99999999******************99997765 PP

  == domain 4  score: 20.0 bits;  conditional E-value: 1.4e-07
                  HHHGGGGG------------------------HHHHHHHHHHHHHHHHHHSSSS..........-STTSSHHHHHHHHHHHHTT---HH....HHHHH CS
  PKD_channel 308 ttlkllkvlrfnktlslltktlaralkdvlgfalvivilflayaqlgvllfGtq..........asnfsnlvksiltlfrlilgdfqyt....elesg 391
                   + ++++++r+ + l+ l  +l+++l +++ + ++++++++ +a lg+ lfG q           +nf  ++ s++t+f++  +  +++    + e +
   KOO21976.1 523 RVFRIFRLVRVWESLRELLAALYNSLVQLFYLMILFALFIFIFALLGMQLFGDQftepkfaeppRANFDSITFSMITVFIV-ANLEDWNtvrrNTERA 619
                  46789999999999999999********************************99443333333336899999999999654.4556677344444444 PP

                  -TTHHHHHHHHHHHHHHHHHHHHHHHHHHT-X CS
  PKD_channel 392 nrvLGpllllalvflvifillnlflaiindsy 423
                    v ++ +++al++l+ fi+lnl++a +  ++
   KOO21976.1 620 VGVVSVPFFVALIVLLNFIMLNLVVATLIGTF 651
                  455556699*****************998777 PP

  == domain 5  score: 2.7 bits;  conditional E-value: 0.025
                  HHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHH CS
  PKD_channel 217 vfvvfvlyfvveeilkirkerasylrsvwnlldlaivvlsvvli 260
                   + v+ l+f v  +  i    ++yl++ wn+ld+++v   ++++
   KOO21976.1 858 GIFVMELAFKVLAYGFISTP-RAYLQDPWNQLDFLVVTSGLLSL 900
                  34444555555555555555.89***********9987666554 PP

  == domain 6  score: 7.9 bits;  conditional E-value: 0.00067
                  HHHHHGGGGG------------------------HHHHHHHHHHHHHHHHHHSSS CS
  PKD_channel 306 flttlkllkvlrfnktlslltktlaralkdvlgfalvivilflayaqlgvllfGt 360
                  +l +l+ l+++  +k ++ + + l ra++ v+ +  v +i+++++ +lgv lfG 
   KOO21976.1 912 VLRVLRPLRLIARSKGMRTAIELLLRAMPRVIDVVAVYLIFLFVFSILGVQLFGG 966
                  566777777888888999999999*****************************95 PP

  == domain 7  score: -1.8 bits;  conditional E-value: 0.58
                   HHHHHHHHHHHHHHHHHHHHHHHT-XXX CS
  PKD_channel  398 llllalvflvifillnlflaiindsyee 425 
                   +++++ ++l  ++llnlf+ ++ + +++
   KOO21976.1 1056 IFFILWIILGSMLLLNLFVGVLVNVFNQ 1083
                   6888899999************999986 PP

  == domain 8  score: 8.4 bits;  conditional E-value: 0.00045
                   HHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHH CS
  PKD_channel  221 fvlyfvveeilkirkerasylrsvwnlldlaivvlsvvlivla 263 
                     ++f+ e ++ki   + +y+++ wn+ d+++v++s++  +++
   KOO21976.1 1180 CTCVFITEAFCKIVALGCEYFSDGWNVFDFFVVLVSIADWLIH 1222
                   6789********************************9876665 PP

  == domain 9  score: 23.3 bits;  conditional E-value: 1.4e-08
                   HHGGGGG------------------------HHHHHHHHHHHHHHHHHHSSSS-........STTSSHHHHHHHHHHHHTT---HH.......... CS
  PKD_channel  309 tlkllkvlrfnktlslltktlaralkdvlgfalvivilflayaqlgvllfGtqa........snfsnlvksiltlfrlilgdfqyt.......... 386 
                   +l++l++++ ++ l+ll + l  +l+++  +  + +i++ +y  lg+ lfG+ +        +nf ++ +++ltlfr+  g  +++          
   KOO21976.1 1249 ILRTLRLVKSAQSLKLLLSMLLLSLPALSNILGIYLIMLSMYSLLGMQLFGNVShgkyldldANFCTFGRAALTLFRCSTG-ESWNglmhdmmvrp 1343
                   67888888888899999999999****9999999999999**********996522333333699999*******986665.56777********* PP

                   .......HHHHH-TTHHHHHHHHHHHHHHHHHHHHHHHHHHT-X CS
  PKD_channel  387 .......elesgnrvLGpllllalvflvifillnlflaiindsy 423 
                          e  +++ +L + +++++++l+ +i+l++++ +i ++y
   KOO21976.1 1344 esgkcsdEERNCGSILAVPFFVSYIVLSTYIVLKMMIVLIIENY 1387
                   ******9888******************************9999 PP

>> GPHH  Voltage-dependent L-type calcium channel, IQ-associated
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.3   0.0   1.6e-10   2.6e-07       2      36 ..    1406    1440 ..    1405    1453 .. 0.92

  Alignments for each domain:
  == domain 1  score: 30.3 bits;  conditional E-value: 1.6e-10
        GPHH    2 FvrvWaeyDPeAtgrikvqdmyellrrlspPLGfG 36  
                  F +vW+ +DP+A+g++  + +++++ +l+pPLG+ 
  KOO21976.1 1406 FMEVWSRFDPQASGLMPTKYLVDFVASLPPPLGLN 1440
                  99*******************************96 PP

>> AhpC-TSA  AhpC/TSA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.9   0.0   1.9e-08   3.2e-05      25     101 ..    1491    1564 ..    1474    1586 .. 0.83

  Alignments for each domain:
  == domain 1  score: 23.9 bits;  conditional E-value: 1.9e-08
                  TSEEEEEEESTST-CCHHHHHHHHHHCHHHCCCTTEEEEEEESSSCHHHHHHHHH-H.SSEEEE-TTSHHHHHTT-E CS
    AhpC-TSA   25 gkpvvlffypkdwcpvCttelpalaklyeefkergvevigvsvdspeshkkfiekeslnfpllsDeegkvakaygvl 101 
                  g pv+l fy+  wc +C++  p+l+kl+ + +   v +  ++vd++ ++++  + +sl+  +l+   gk+++++  +
  KOO21976.1 1491 GGPVILDFYAD-WCGPCKQLTPKLEKLVTASQ-GAVRLAKINVDNLPEIAQALQVKSLPTVMLLHA-GKLVDQFTGV 1564
                  569********.****************9999.679**************************9985.4444444433 PP

>> Thioredoxin_2  Thioredoxin-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.5   0.0   3.6e-08   5.8e-05       5     107 ..    1491    1572 ..    1489    1574 .. 0.80

  Alignments for each domain:
  == domain 1  score: 23.5 bits;  conditional E-value: 3.6e-08
  Thioredoxin_2    5 gkpvlvvftdpdCpyCkklkkelkelddvtvrvllfplkpsfepkavaiwcakekkkafkdieenvelarkygvrgtPtivfldgkeivarlpG 98  
                     g pv+++f++++C+ Ck+l  +l++l  vt        + ++  + ++++  +             e a++++v+++Pt+ +l + + v++ +G
     KOO21976.1 1491 GGPVILDFYADWCGPCKQLTPKLEKL--VTAS------QGAVRLAKINVDNLP-------------EIAQALQVKSLPTVMLLHAGKLVDQFTG 1563
                     689***********************..5555......444444445555444.............468**********88666666******* PP

  Thioredoxin_2   99 yvpaeelea 107 
                      +p +++++
     KOO21976.1 1564 VLPDAQIKQ 1572
                     ***999987 PP

>> Thioredoxin_8  Thioredoxin-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.7   0.0   2.1e-06    0.0034       3      44 ..    1493    1532 ..    1491    1542 .. 0.84
   2 ?   -0.7   0.0       1.1   1.8e+03      73      90 ..    1536    1553 ..    1528    1556 .. 0.86

  Alignments for each domain:
  == domain 1  score: 17.7 bits;  conditional E-value: 2.1e-06
                     EEEEEE--SSSHHHHHHHHHHHHHHHHHHHTTSEEEEEEE-S CS
  Thioredoxin_8    3 vvlLyfgaswcppckaftpklkelyeklkkkkkveivyvsld 44  
                      v+L f+a+wc pck+ tpkl +l +  +    v++  +++d
     KOO21976.1 1493 PVILDFYADWCGPCKQLTPKLEKLVTASQ--GAVRLAKINVD 1532
                     699********************999887..66666666666 PP

  == domain 2  score: -0.7 bits;  conditional E-value: 1.1
                     HHTT-S--TT-SEEEEE- CS
  Thioredoxin_8   73 klkkkynvkaiPtlvvld 90  
                     ++++ ++vk++Pt+++l+
     KOO21976.1 1536 EIAQALQVKSLPTVMLLH 1553
                     67899***********96 PP

>> Redoxin  Redoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.0   2.5e-05     0.041      28      91 ..    1491    1552 ..    1483    1572 .. 0.89

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 2.5e-05
                  TSEEEEEEESTTT-HHHHHTHHHHHTHHHHHHCSTTTEEEEEESSSHHHHHHHHHTT-TSEEEE CS
     Redoxin   28 gkkvvvnfvpgafcPtCsaehpyleklaellkekgvdvvavvadndafvkefwgkeglkfpvls 91  
                  g++v++ f++  +c++C++ +p+lekl +  ++++v    +++dn +   +++  ++l+ ++l+
  KOO21976.1 1491 GGPVILDFYAD-WCGPCKQLTPKLEKLVTA-SQGAVRLAKINVDNLPEIAQALQVKSLPTVMLL 1552
                  7789999****.***************999.9***************99999998888887776 PP

>> DUF3935  Protein of unknown function (DUF3935)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.8   0.1    0.0061       9.9      12      30 ..     250     268 ..     241     278 .. 0.82
   2 ?    3.4   7.2     0.069   1.1e+02       5      30 ..     550     577 ..     547     607 .. 0.78
   3 ?   -2.6   0.1       5.3   8.7e+03      18      60 ..     595     633 ..     587     641 .. 0.53
   4 ?    6.5   0.9    0.0076        12      13      28 ..     951     966 ..     941     972 .. 0.79
   5 ?   -0.1   0.1      0.86   1.4e+03       6      28 ..    1279    1300 ..    1275    1316 .. 0.73

  Alignments for each domain:
  == domain 1  score: 6.8 bits;  conditional E-value: 0.0061
     DUF3935  12 sffvfwfsvlGvqrfaefl 30 
                 +f++  f vlGvq+fa  l
  KOO21976.1 250 AFIMVVFGVLGVQMFAGTL 268
                 466678*********9766 PP

  == domain 2  score: 3.4 bits;  conditional E-value: 0.069
     DUF3935   5 qvfG..iilsffvfwfsvlGvqrfaefl 30 
                 q+f   i++++f+f f++lG+q f + +
  KOO21976.1 550 QLFYlmILFALFIFIFALLGMQLFGDQF 577
                 55541155678*************8765 PP

  == domain 3  score: -2.6 bits;  conditional E-value: 5.3
     DUF3935  18 fsvlGvqrfaefldveslkfveGkteaarvfyspypflivfli 60 
                 fs++ v   a++ d ++   v   te a    s  pf++ +++
  KOO21976.1 595 FSMITVFIVANLEDWNT---VRRNTERAVGVVS-VPFFVALIV 633
                 66666666666555443...4455555544333.355443333 PP

  == domain 4  score: 6.5 bits;  conditional E-value: 0.0076
     DUF3935  13 ffvfwfsvlGvqrfae 28 
                 +f+f fs+lGvq f  
  KOO21976.1 951 IFLFVFSILGVQLFGG 966
                 68999********965 PP

  == domain 5  score: -0.1 bits;  conditional E-value: 0.86
     DUF3935    6 vfGiilsffvfwfsvlGvqrfae 28  
                  ++Gi l  ++  +s+lG+q f +
  KOO21976.1 1279 ILGIYLI-MLSMYSLLGMQLFGN 1300
                  5566554.345689*****9975 PP

>> TPR_19  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.1   1.2      0.36   5.8e+02       1      36 [.    1597    1632 ..    1597    1652 .. 0.91
   2 ?    9.4   0.5   0.00094       1.5      17      54 ..    1692    1729 ..    1672    1743 .. 0.84

  Alignments for each domain:
  == domain 1  score: 1.1 bits;  conditional E-value: 0.36
      TPR_19    1 llaegdyaeAlalleqalqedpknaearllLAeall 36  
                  ll+ gd   A ++++q+l+   + a ar++LA + l
  KOO21976.1 1597 LLEGGDVPGATRAYAQLLALPEHAASARAGLALCAL 1632
                  67889999********9999999999999**99987 PP

  == domain 2  score: 9.4 bits;  conditional E-value: 0.00094
      TPR_19   17 alqedpknaearllLAeallalgqldeAealLdalpee 54  
                   l+ +p + + r++LA+ ll +gq de ++ L  ++++
  KOO21976.1 1692 TLEGAPRDHATRYALAQKLLGAGQHDESIEELLLVLRK 1729
                  57889*************************99877765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1770 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       707  (0.0394333); expected 358.6 (0.02)
Passed bias filter:                      385  (0.0214736); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                        15  (0.000836633); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 1.02u 0.31s 00:00:01.33 Elapsed: 00:00:00.50
# Mc/sec: 10565.83
//
Query:       KOO21977.1  [L=406]
Description: hypothetical protein Ctob_007888 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      1e-06   28.8   0.0    2.4e-06   27.6   0.0    1.5  1  tRNA_int_end_N2  tRNA-splicing endonuclease subunit sen54 N-t


Domain annotation for each model (and alignments):
>> tRNA_int_end_N2  tRNA-splicing endonuclease subunit sen54 N-term
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.6   0.0   1.3e-10   2.4e-06       4      65 ..      33      90 ..      31      96 .. 0.92

  Alignments for each domain:
  == domain 1  score: 27.6 bits;  conditional E-value: 1.3e-10
  tRNA_int_end_N2  4 lsyeRvhsskslvraiwfprdrvvvvespkarGkhfktmGvsrarrgrlwLlpeEaLYLvEr 65
                     l+++R+h s sl  a w+p ++ + v+++   G  +  mG +  r g+ wL+p E+L L+E 
       KOO21977.1 33 LQAPRTHASASLPSAEWDPVRALAKVTKE--CGRDLLLMGFH--RDGSQWLYPAEMLCLLED 90
                     789************************66..*********77..9***************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (406 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       554  (0.0308997); expected 358.6 (0.02)
Passed bias filter:                      291  (0.0162307); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.25s 00:00:00.72 Elapsed: 00:00:00.41
# Mc/sec: 2986.29
//
Query:       KOO21978.1  [L=789]
Description: protein isoform a, partial [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    4.6e-11   43.1   1.7    4.6e-11   43.1   1.7    3.0  3  DFRP_C         DRG Family Regulatory Proteins, Tma46
    8.2e-07   28.5   0.6    8.2e-07   28.5   0.6    1.8  2  Ion_trans      Ion transport protein


Domain annotation for each model (and alignments):
>> DFRP_C  DRG Family Regulatory Proteins, Tma46
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.5      0.63   5.7e+03      44      44 ..      42      42 ..      11      68 .. 0.54
   2 ?   -4.8   8.0         2   1.8e+04      29      86 ..      72     128 ..      56     133 .. 0.48
   3 !   43.1   1.7   5.1e-15   4.6e-11       4      80 ..     204     287 ..     203     298 .. 0.89

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 0.63
      DFRP_C 44 k 44
                +
  KOO21978.1 42 A 42
                1 PP

  == domain 2  score: -4.8 bits;  conditional E-value: 2
      DFRP_C  29 kWKkkrlekkeaeeekeekkkkke.....glsGrelf.efnpelaedddeeeeeeeeeawdlee 86 
                 + K k+  ++eae++++++  k       +   r++f +       + d+++e++  e+wd e+
  KOO21978.1  72 EAKSKKELQREAEAKAAAALAKVAgekkkEPDKRDIFvD-------TRDQKKEADGMEDWDDEK 128
                 555555555555555543222221122223455666633.......333333333334555444 PP

  == domain 3  score: 43.1 bits;  conditional E-value: 5.1e-15
      DFRP_C   4 LEefiEteRakLdkklTpvtletFakWKkkrlekkeaeeekeekkkkke........glsGrelfefnpelaedddeeeeeeeee 80 
                 LE++iE++R+ L++  Tpvtle   +W +k+++  +a+e+++ ++k++         g++G+ lf+++ +l+ dd+ +++ +++ 
  KOO21978.1 204 LEDIIEEKRKALTT-RTPVTLERLIEWLEKKKAAAAAAESADLEEKRAAyaktgkaaGVTGKMLFTIDASLFVDDAAANDVQRDV 287
                 9************9.9***********9999999999999988888888899***********************9999977554 PP

>> Ion_trans  Ion transport protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.5   0.6   9.2e-11   8.2e-07       4      86 ..     342     461 ..     339     499 .. 0.86
   2 ?   -1.9   0.6      0.18   1.6e+03     182     215 ..     533     566 ..     504     582 .. 0.59

  Alignments for each domain:
  == domain 1  score: 28.5 bits;  conditional E-value: 9.2e-11
                 HHHHHHHHHHHHHHHHHCCCSSSSHHHHC.HHHHHHHHHHHHHHHHHHHHHHHHHTH.................................HHHHHHCHS CS
   Ion_trans   4 felfilllillncvflaletyfpedelek.tileilelvftaiftlemllkilalgl.................................likkrYlrd 68 
                 ++  + + + ++++++++e +f   e++  +  ++++ +++ +f+++m+++++ ++                                  + ++rYlr+
  KOO21978.1 342 WDTACGIALSYTALACPFEVAFLGPETNWrSGRFWINRIIDLFFLFDMFMQFIIMYAeepkwevdhrkqvlaraglvkkikvvqmitridKTTLRYLRT 440
                 677777888899999999999999666658999*******************************************************9999999**** PP

                 HHHHHHHHHHHHHHHHH....H CS
   Ion_trans  69 pwnilDflvvlpsllsl....v 86 
                  w+++Dfl+++++++++    +
  KOO21978.1 441 -WFLIDFLSIITVVFDIlpvfD 461
                 .9************99855441 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 0.18
                 HHHHHHHHHTTSSHHHHHHHHHHHSHHHHHHHHH CS
   Ion_trans 182 allwlfrlmttegwgdilyatldekskvaliyfv 215
                 +++w++ ++++   gd  +++++  + + +++ v
  KOO21978.1 533 SFYWTIMIISGASGGDTDSNMMSPPEALLFTFIV 566
                 4555555555554444444444444333333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (789 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1830  (0.102069); expected 358.6 (0.02)
Passed bias filter:                      811  (0.045234); expected 358.6 (0.02)
Passed Vit filter:                        81  (0.00451782); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.81u 0.29s 00:00:01.10 Elapsed: 00:00:00.43
# Mc/sec: 5451.02
//
Query:       KOO21979.1  [L=1367]
Description: hypothetical protein Ctob_007886 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1367 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2289  (0.12767); expected 358.6 (0.02)
Passed bias filter:                      421  (0.0234815); expected 358.6 (0.02)
Passed Vit filter:                       120  (0.00669307); expected 17.9 (0.001)
Passed Fwd filter:                        47  (0.00262145); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 2.19u 0.43s 00:00:02.62 Elapsed: 00:00:00.67
# Mc/sec: 6145.42
//
Query:       KOO21980.1  [L=392]
Description: 2og-fe oxygenase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.4e-18   66.5   0.0      4e-18   65.8   0.0    1.4  1  2OG-FeII_Oxy  2OG-Fe(II) oxygenase superfamily
    4.2e-16   59.8   0.0    4.8e-15   56.4   0.0    2.1  2  DIOX_N        non-haem dioxygenase in morphine synthesis N-te


Domain annotation for each model (and alignments):
>> 2OG-FeII_Oxy  2OG-Fe(II) oxygenase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.8   0.0   4.4e-22     4e-18       4     100 ..     234     346 ..     231     347 .. 0.85

  Alignments for each domain:
  == domain 1  score: 65.8 bits;  conditional E-value: 4.4e-22
                   EEEEEEE-S-...--------EEEEEESSSEEEEEEE-.......TT---E.EEETEEEE----TTEEEEEE-HHHHHHTTS-S----EEE----GT CS
  2OG-FeII_Oxy   4 llvlnyypph...pdpevilglgahtdaslltillqdd.......vgglev.fkdgkwlrvppvdnslivniGdallflsngryksvlHrVlpvneg 89 
                    l+l yypp     + ++  + g+htd++ +til+qd+        ggl+v +++g+w  vpp  ++++vniGd +++++ngr +s+ HrV++  +g
    KOO21980.1 234 SLRLAYYPPLspeAQESSAVRYGEHTDYTGFTILHQDEadvgdlaAGGLQVrLQTGEWHAVPPTAGAFVVNIGDLYEIWTNGRWRSTVHRVMKPPPG 330
                   68899998875433333388999*****************99999999999446799***********************************66666 PP

                   GS.....EEEEEEEE- CS
  2OG-FeII_Oxy  90 er.....Rvsiayfie 100
                   +      R+si +f  
    KOO21980.1 331 SAaasapRLSIPFFTG 346
                   6669999******986 PP

>> DIOX_N  non-haem dioxygenase in morphine synthesis N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.7   0.0     0.093   8.4e+02      33      52 ..      12      31 ..       7      35 .. 0.89
   2 !   56.4   0.0   5.3e-19   4.8e-15       1     104 [.      61     187 ..      61     198 .. 0.91

  Alignments for each domain:
  == domain 1  score: 0.7 bits;  conditional E-value: 0.093
      DIOX_N 33 yvvnhgvpeelidelfeaar 52
                y+  hgv+e+l++++ e++r
  KOO21980.1 12 YLAAHGVQEALAAAVSEVLR 31
                8999*********9999877 PP

  == domain 2  score: 56.4 bits;  conditional E-value: 5.3e-19
      DIOX_N   1 iPvidlspl.....sddedraavaeqlreAcrevGffyvvnhgvpeelidelfeaareFFalPeeeKeklaksp...sfrGysrlgeektdg....... 84 
                 +P++d+sp+       de+r++vaeq ++A+ +vGf ++++hgvp+  i++l++ a  FFa  ++ K+ +   p    f G++++g+e +++       
  KOO21980.1  61 VPIVDISPFvdeaaHADEARRQVAEQWDSAMMHVGFAIITGHGVPPHTISALRDGAMGFFADDLASKNVYNYGPygnPFGGFTGMGTEAVSRtrdkhgs 159
                 7********99885556889**************************************************665555699***********99999**** PP

      DIOX_N  85 ........kkldwkesfdlgtelpeddp 104
                         + +d+ esf +++e p+ +p
  KOO21980.1 160 dggadhagALPDLVESFIFKPESPKPKP 187
                 **********************998777 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (392 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       362  (0.0201908); expected 358.6 (0.02)
Passed bias filter:                      329  (0.0183502); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.50u 0.24s 00:00:00.74 Elapsed: 00:00:00.42
# Mc/sec: 2820.60
//
Query:       KOO21981.1  [L=167]
Description: hypothetical protein Ctob_000460 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (167 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       530  (0.029561); expected 358.6 (0.02)
Passed bias filter:                      441  (0.024597); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.40u 0.23s 00:00:00.63 Elapsed: 00:00:00.38
# Mc/sec: 1303.70
//
Query:       KOO21982.1  [L=709]
Description: hypothetical protein Ctob_000448 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.6e-12   44.9   0.6    1.6e-05   24.1   0.2    2.7  2  EF-hand_1  EF hand
    1.7e-10   40.0   0.7    7.5e-05   22.4   0.2    2.9  2  EF-hand_6  EF-hand domain
    7.8e-10   37.8   1.7    9.6e-05   21.7   0.7    2.5  2  EF-hand_5  EF hand
    4.8e-09   36.5   0.6    1.9e-08   34.6   0.6    2.0  1  EF-hand_7  EF-hand domain pair
    1.2e-06   28.2   2.3      0.012   15.5   0.3    2.7  2  EF-hand_8  EF-hand domain pair
    4.8e-06   26.2   1.8      0.058   13.5   0.2    4.2  5  LRR_6      Leucine Rich repeat
    0.00015   22.1   0.1        1.5    9.3   0.0    3.6  4  LRR_4      Leucine Rich repeats (2 copies)
     0.0057   16.4   0.7        5.6    6.8   0.0    3.5  3  LRR_8      Leucine rich repeat
  ------ inclusion threshold ------
        4.2    7.2   6.2        4.8    7.0   3.1    2.5  2  GLTT       GLTT repeat (6 copies)


Domain annotation for each model (and alignments):
>> EF-hand_1  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.1   0.2     8e-09   1.6e-05       5      28 ..      26      49 ..      24      50 .. 0.94
   2 !   18.5   0.0   4.9e-07   0.00098       2      27 ..      57      82 ..      56      84 .. 0.89

  Alignments for each domain:
  == domain 1  score: 24.1 bits;  conditional E-value: 8e-09
                HHHHHTTTSSSEEEHHHHHHHHHH CS
   EF-hand_1  5 iFrefDkDgdGkIdfeEfkellkk 28
                iF+++D+Dg+G+++++E+++++k+
  KOO21982.1 26 IFKVIDVDGSGQLSIDELRQFFKH 49
                9********************997 PP

  == domain 2  score: 18.5 bits;  conditional E-value: 4.9e-07
                HHHHHHHHTTTSSSEEEHHHHHHHHH CS
   EF-hand_1  2 lkeiFrefDkDgdGkIdfeEfkellk 27
                ++e+  ++D+Dg+G I+ +E+++++ 
  KOO21982.1 57 VEELLGKIDTDGNGEISCDEWRKCFH 82
                6788889***************9986 PP

>> EF-hand_6  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.4   0.2   3.8e-08   7.5e-05       5      28 ..      26      49 ..      24      55 .. 0.92
   2 !   14.9   0.0   9.6e-06     0.019       3      27 ..      58      82 ..      56      92 .. 0.87

  Alignments for each domain:
  == domain 1  score: 22.4 bits;  conditional E-value: 3.8e-08
   EF-hand_6  5 aFklfDkdgdGkidaeElrkalrk 28
                +Fk +D+dg+G+++++Elr+++++
  KOO21982.1 26 IFKVIDVDGSGQLSIDELRQFFKH 49
                7********************995 PP

  == domain 2  score: 14.9 bits;  conditional E-value: 9.6e-06
   EF-hand_6  3 reaFklfDkdgdGkidaeElrkalr 27
                +e+  ++D+dg+G+i+ +E+rk++ 
  KOO21982.1 58 EELLGKIDTDGNGEISCDEWRKCFH 82
                577789****************997 PP

>> EF-hand_5  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.7   0.7   4.8e-08   9.6e-05       4      24 ..      26      46 ..      24      48 .. 0.91
   2 !   14.7   0.0   8.1e-06     0.016       4      23 ..      60      79 ..      57      82 .. 0.86

  Alignments for each domain:
  == domain 1  score: 21.7 bits;  conditional E-value: 4.8e-08
                HHHHH-SS-SSCE-HHHHHHH CS
   EF-hand_5  4 tFqaiDlNgDGkIskeELktl 24
                 F+ iD++g+G++s++EL+++
  KOO21982.1 26 IFKVIDVDGSGQLSIDELRQF 46
                6******************96 PP

  == domain 2  score: 14.7 bits;  conditional E-value: 8.1e-06
                HHHHH-SS-SSCE-HHHHHH CS
   EF-hand_5  4 tFqaiDlNgDGkIskeELkt 23
                ++ +iD++g G Is +E+++
  KOO21982.1 60 LLGKIDTDGNGEISCDEWRK 79
                6679**************98 PP

>> EF-hand_7  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.6   0.6   9.5e-12   1.9e-08       7      65 ..      26      76 ..      24      81 .. 0.91

  Alignments for each domain:
  == domain 1  score: 34.6 bits;  conditional E-value: 9.5e-12
   EF-hand_7  7 aFkelDtdgdgyldkeellrllrkifqgagegsklsdeelellfkefDtdkdGvisfdE 65
                +Fk +D+dg+g l+ +el+++++         s+l+ +++e+l+ ++Dtd++G+is dE
  KOO21982.1 26 IFKVIDVDGSGQLSIDELRQFFK--------HSPLDNDKVEELLGKIDTDGNGEISCDE 76
                6******************9999........57888899*****************999 PP

>> EF-hand_8  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.4   0.1   5.3e-05      0.11      29      54 ..      24      49 ..      23      50 .. 0.95
   2 !   15.5   0.3   5.9e-06     0.012      22      49 ..      51      78 ..      48      82 .. 0.86

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 5.3e-05
   EF-hand_8 29 dilfrefDtdgdGkisfeEFcvller 54
                di+f+ +D dg+G +s +E  +++++
  KOO21982.1 24 DIIFKVIDVDGSGQLSIDELRQFFKH 49
                79********************9987 PP

  == domain 2  score: 15.5 bits;  conditional E-value: 5.9e-06
   EF-hand_8 22 glseeevdilfrefDtdgdGkisfeEFc 49
                 l +++v++l+ ++Dtdg+G is++E  
  KOO21982.1 51 PLDNDKVEELLGKIDTDGNGEISCDEWR 78
                4889*********************965 PP

>> LRR_6  Leucine Rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.7   0.1         9   1.8e+04       3       8 ..     446     451 ..     445     452 .. 0.82
   2 !   13.5   0.2   2.9e-05     0.058       3      23 ..     517     537 ..     515     538 .. 0.92
   3 ?   -1.2   0.0       1.4   2.9e+03       3      11 ..     548     556 ..     546     557 .. 0.83
   4 !    8.0   0.0    0.0016       3.3       3      24 .]     623     644 ..     621     644 .. 0.89
   5 ?    0.2   0.0      0.51     1e+03       3      14 ..     653     664 ..     651     666 .. 0.83

  Alignments for each domain:
  == domain 1  score: -3.7 bits;  conditional E-value: 9
       LRR_6   3 thLteL 8  
                 ++Lt+L
  KOO21982.1 446 STLTHL 451
                 799999 PP

  == domain 2  score: 13.5 bits;  conditional E-value: 2.9e-05
       LRR_6   3 thLteLdLsgNdIgDeGaeaL 23 
                 ++Lt+L L +N ++ eGa+aL
  KOO21982.1 517 PNLTSLTLVSNSLTTEGATAL 537
                 89******************9 PP

  == domain 3  score: -1.2 bits;  conditional E-value: 1.4
       LRR_6   3 thLteLdLs 11 
                 ++L++Ld+ 
  KOO21982.1 548 PKLRSLDMG 556
                 79*****85 PP

  == domain 4  score: 8.0 bits;  conditional E-value: 0.0016
       LRR_6   3 thLteLdLsgNdIgDeGaeaLa 24 
                 t Lt+L+++gNd++  G+  La
  KOO21982.1 623 TPLTSLSMTGNDLDEIGVAQLA 644
                 669***********99998887 PP

  == domain 5  score: 0.2 bits;  conditional E-value: 0.51
       LRR_6   3 thLteLdLsgNd 14 
                 ++L + +LsgN+
  KOO21982.1 653 PKLAYINLSGNE 664
                 689999*****7 PP

>> LRR_4  Leucine Rich repeats (2 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.2   0.0    0.0018       3.5      19      39 ..     513     529 ..     506     539 .. 0.81
   2 ?   -2.1   0.0       2.9   5.9e+03      23      30 ..     548     555 ..     543     558 .. 0.82
   3 ?    2.3   0.0      0.12   2.4e+02      22      42 ..     621     638 ..     600     640 .. 0.75
   4 !    9.3   0.0   0.00077       1.5       3      34 ..     625     664 ..     623     670 .. 0.83

  Alignments for each domain:
  == domain 1  score: 8.2 bits;  conditional E-value: 0.0018
                 HHH-TT--EEE-.-S-----G CS
       LRR_4  19 leklpnLkeLdLsgNnlitdl 39 
                 ++klpnL++L+L +N    +l
  KOO21982.1 513 CGKLPNLTSLTLVSN----SL 529
                 458*********999....44 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 2.9
                 TT--EEE- CS
       LRR_4  23 pnLkeLdL 30 
                 p+L++Ld+
  KOO21982.1 548 PKLRSLDM 555
                 78888887 PP

  == domain 3  score: 2.3 bits;  conditional E-value: 0.12
                 -TT.--EEE-.-S-----GGGG CS
       LRR_4  22 lpn.LkeLdLsgNnlitdldeL 42 
                 +p  L++L+++gN    dlde+
  KOO21982.1 621 CPTpLTSLSMTGN----DLDEI 638
                 55559********....99876 PP

  == domain 4  score: 9.3 bits;  conditional E-value: 0.00077
                 --EEE--SS---E-S-..HH......H-TT--EEE-.-S- CS
       LRR_4   3 LevLdLsnNqltdipl..le......klpnLkeLdLsgNn 34 
                 L++L+  +N l +i+   l+      +lp+L +++LsgN 
  KOO21982.1 625 LTSLSMTGNDLDEIGVaqLAemitsgQLPKLAYINLSGNE 664
                 899999999****99966447888967************4 PP

>> LRR_8  Leucine rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.9   0.0       6.2   1.2e+04      32      42 ..     443     453 ..     441     460 .. 0.66
   2 !    6.8   0.0    0.0028       5.6      22      39 ..     514     531 ..     507     538 .. 0.64
   3 !    5.6   0.1    0.0068        14      22      35 ..     650     663 ..     623     668 .. 0.59

  Alignments for each domain:
  == domain 1  score: -3.9 bits;  conditional E-value: 6.2
                 --SS---GGGG CS
       LRR_8  32 LsnNllttlsp 42 
                 Ls  +lt+ls+
  KOO21982.1 443 LSASTLTHLSA 453
                 56666777764 PP

  == domain 2  score: 6.8 bits;  conditional E-value: 0.0028
                 TT-TT--EEE--SS---G CS
       LRR_8  22 kglsnLkvLdLsnNlltt 39 
                  +l+nL++L L +N+ltt
  KOO21982.1 514 GKLPNLTSLTLVSNSLTT 531
                 556666666666666665 PP

  == domain 3  score: 5.6 bits;  conditional E-value: 0.0068
                 TT-TT--EEE--SS CS
       LRR_8  22 kglsnLkvLdLsnN 35 
                  +l++L +++Ls N
  KOO21982.1 650 GQLPKLAYINLSGN 663
                 44777777777777 PP

>> GLTT  GLTT repeat (6 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.0   3.1    0.0024       4.8       2      22 ..     519     539 ..     519     540 .. 0.83
   2 ?   -0.3   0.1      0.49   9.7e+02       6      13 ..     599     606 ..     596     610 .. 0.48

  Alignments for each domain:
  == domain 1  score: 7.0 bits;  conditional E-value: 0.0024
        GLTT   2 LvtlGLvslGLvtmGLvtlGL 22 
                 L++l Lvs++L+t G ++lGL
  KOO21982.1 519 LTSLTLVSNSLTTEGATALGL 539
                 677889999999999999998 PP

  == domain 2  score: -0.3 bits;  conditional E-value: 0.49
        GLTT   6 GLvslGLv 13 
                  L+++GL+
  KOO21982.1 599 SLPNKGLT 606
                 44444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (709 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       298  (0.0166211); expected 358.6 (0.02)
Passed bias filter:                      267  (0.0148921); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.58u 0.26s 00:00:00.84 Elapsed: 00:00:00.44
# Mc/sec: 4803.88
//
Query:       KOO21983.1  [L=291]
Description: hypothetical protein Ctob_000449 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (291 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       237  (0.0132188); expected 358.6 (0.02)
Passed bias filter:                      221  (0.0123264); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.41u 0.26s 00:00:00.67 Elapsed: 00:00:00.41
# Mc/sec: 2124.07
//
Query:       KOO21984.1  [L=910]
Description: hypothetical protein Ctob_000442 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.6e-09   36.0   0.0    5.8e-09   35.3   0.0    1.2  1  Tyr-DNA_phospho  Tyrosyl-DNA phosphodiesterase
    4.8e-06   26.8   0.0    8.3e-06   26.0   0.0    1.3  1  HAD_2            Haloacid dehalogenase-like hydrolase
      8e-05   22.6   0.1     0.0002   21.4   0.1    1.7  1  Hydrolase_like   HAD-hyrolase-like


Domain annotation for each model (and alignments):
>> Tyr-DNA_phospho  Tyrosyl-DNA phosphodiesterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.3   0.0   9.8e-13   5.8e-09     358     423 ..      30     103 ..      23     114 .. 0.79

  Alignments for each domain:
  == domain 1  score: 35.3 bits;  conditional E-value: 9.8e-13
                      EESEEEEES--BSHHHH--S......................SS--SSBEEEEEEEGG......------SEEESS-SSEEE- CS
  Tyr-DNA_phospho 358 kidWalltSaNLSkqAWGeleka.................keelrirsyElGVlvlpkkdlpeeeektevgvrvPydlplepY 423
                       ++W++ +S+NLS +AWG+ ek                  +ee+ i+syE+GVl++p+         t   + +P++ p  +Y
       KOO21984.1  30 LCAWVYAGSHNLSGAAWGKHEKVhgsgegsdgassdedveEEEFVIMSYEIGVLIIPR---------TPRRFALPWRSPAIRY 103
                      589**************7776545556666666666677555***************9.........5566777777777776 PP

>> HAD_2  Haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.0   0.0   1.4e-09   8.3e-06     135     176 ..     801     842 ..     793     843 .. 0.93

  Alignments for each domain:
  == domain 1  score: 26.0 bits;  conditional E-value: 1.4e-09
       HAD_2 135 KPdpeviekaleklklkkeeviyvGDsptDieaakkagikvi 176
                 KP+p+++++a+++ ++++++++++G  + D eaa kag++++
  KOO21984.1 801 KPHPDMLLAAMKHHQVDPAHTLMIGYDFIDQEAASKAGVDYV 842
                 ***************************************975 PP

>> Hydrolase_like  HAD-hyrolase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.4   0.1   3.3e-08    0.0002       3      44 ..     800     840 ..     798     842 .. 0.93

  Alignments for each domain:
  == domain 1  score: 21.4 bits;  conditional E-value: 3.3e-08
                     STTSSHHHHHHHHHH---GGGEEEEES-TTTHHHHHHHCT-E CS
  Hydrolase_like   3 gKPepemydfalevlgsdpeevlmiGDrlatDiagAnnaGwk 44 
                      KP+p m+ +a++++++dp+++lmiG +   D ++A +aG++
      KOO21984.1 800 CKPHPDMLLAAMKHHQVDPAHTLMIGYD-FIDQEAASKAGVD 840
                     5*************************99.99********986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (910 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       306  (0.0170673); expected 358.6 (0.02)
Passed bias filter:                      228  (0.0127168); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.59u 0.26s 00:00:00.85 Elapsed: 00:00:00.41
# Mc/sec: 6711.16
//
Query:       KOO21985.1  [L=497]
Description: hypothetical protein Ctob_000443 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    9.8e-08   31.3   0.0    0.00016   20.7   0.0    2.6  2  Tyr-DNA_phospho  Tyrosyl-DNA phosphodiesterase


Domain annotation for each model (and alignments):
>> Tyr-DNA_phospho  Tyrosyl-DNA phosphodiesterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.7   0.0   9.1e-09   0.00016     101     221 ..     142     320 ..     135     348 .. 0.79
   2 !    7.8   0.0   7.5e-05       1.3     201     291 ..     350     453 ..     345     467 .. 0.67

  Alignments for each domain:
  == domain 1  score: 20.7 bits;  conditional E-value: 9.1e-09
                      -B---EEEEEETTS................EEEEEEESS-BSHHHHHSSB-EEEE---EEE................................. CS
  Tyr-DNA_phospho 101 thHsKmmilfyedd................slrvvihtaNlieaDwgnmtqgvwrspllpl................................. 145
                      t+H K+++l ++ +                 lr++i++aNl ++D +   + vw  + +                                   
       KOO21985.1 142 TMHPKLWLLEFDRGgpvptgaglgaglgagFLRLIISSANLGRYDAKI-NNQVWACDFVRCedaeealaslsvkdlkrecihdygvdlgggcer 234
                      55555555555555555555555555555579**************99.666788887666778888888888889999999999999999999 PP

                      .........S--SS--HHHHHHHHHHHTT..-....HHHHTHHHHHTEE-GGGT.-EEEEE---TTS--......HHHHHHHHHHH CS
  Tyr-DNA_phospho 146 ...lesskeseeesgtrFkrdLleYLkaygkk....klkklieklkkyDfsevr.valiaSvPgrhkgs..ktkwGlakLkkalke 221
                         +++  e++ +  + F  dL ++++a  ++      k + ++l +y+  +     li SvPgr++ s  + ++Gl + +  +++
       KOO21985.1 235 rewQQALLEARRTATADFGADLRRFVRALLERvspaLWKLWEDTLANYELCPPLgTHLILSVPGRYSTSraEPQTGLISDRARISS 320
                      886557778899999**************9998888888999*******987666*************999999999876666655 PP

  == domain 2  score: 7.8 bits;  conditional E-value: 7.5e-05
                      -TTS--.......HHHHHHHHHHHTCT..T----EEEEEEE-SBB---S-.SSS---HHHHTHHHHHTTSS............---......HH CS
  Tyr-DNA_phospho 201 grhkgs...ktkwGlakLkkalkelplekeekskeleivaqvSSigslgstekwlknefleslspalqgkd............ksk......ee 273
                      g+       ++ +G  +L++ l++    ++ ++++  + + +SS+g l +    + + +l +  + +   +            k +      e 
       KOO21985.1 350 GTTPTVvceAELYGQLALRRHLRAALHARPPSERPNVVEYACSSLGVLED----IMQPLLGCYPANA---NaaerararaaafK-EglapiaE- 434
                      555444566899**********99888666666688999*******9999....2222333332222...23345555555441.13444432. PP

                      H.HHTEEEE..EE--BSGG CS
  Tyr-DNA_phospho 274 e.ekkskpkfkiifPtvee 291
                      + ++ ++p++k+++P+ +e
       KOO21985.1 435 HhSRPHEPHVKLVWPSLNE 453
                      247778899*******887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (497 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       352  (0.019633); expected 358.6 (0.02)
Passed bias filter:                      298  (0.0166211); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.24s 00:00:00.71 Elapsed: 00:00:00.39
# Mc/sec: 3813.64
//
Query:       KOO21986.1  [L=1652]
Description: hypothetical protein Ctob_000441, partial [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1652 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       494  (0.0275531); expected 358.6 (0.02)
Passed bias filter:                      407  (0.0227007); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.89u 0.27s 00:00:01.16 Elapsed: 00:00:00.45
# Mc/sec: 11044.88
//
Query:       KOO21987.1  [L=631]
Description: transmembrane 9 superfamily member 4-like protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
   1.3e-194  647.7   7.3   2.1e-194  647.0   7.3    1.3  1  EMP70        Endomembrane protein 70


Domain annotation for each model (and alignments):
>> EMP70  Endomembrane protein 70
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  647.0   7.3  1.2e-198  2.1e-194       1     518 [.      52     587 ..      52     588 .. 0.93

  Alignments for each domain:
  == domain 1  score: 647.0 bits;  conditional E-value: 1.2e-198
       EMP70   1 pydYydllpfCkpeeekkkesesLgevLrGdrienspyelkfgkdeeckvlCtkkltkeelkklkelIkngYvvnwlvDnLPvatsfvs.......... 89 
                 pydYy+ lpfCkpee  ++++e+Lgev++G  i+nspyel +g++ e k+ C++ l+k++ ++l  +++++Y+v++++DnLP+at+++           
  KOO21987.1  52 PYDYYS-LPFCKPEE-VTRQAENLGEVMSGAIIQNSPYELYMGRS-EFKIACRSVLDKKQKQNLATKVRQDYRVHMIMDNLPAATKMIAempdgtkkdm 147
                 8*****.88****75.678889*********************98.78************************************777777777888888 PP

       EMP70  90 .aaGfplGfvdkee....ekekyylnnhldfviryhkakeeekkrivgfevepksvkde.e.e.eeCp.kea.eleleee.k..keeeteipftYsVkw 175
                   +Gf+lGf+++++    +++k+y+nnhl+f+++yhk+++  + rivgfeve +svk+e + e +  +  +  ++ l+ e     + + e++ftY+  w
  KOO21987.1 148 yDRGFRLGFMGSKDipgtDANKPYINNHLRFIVKYHKSDTFPGARIVGFEVEAYSVKHEyTgEwN-AKePKLtSVPLRPElPpmPAWSPEVIFTYDCVW 245
                 778********983456699****************98888899**************9543231.221111124443333145557789********* PP

       EMP70 176 resedvewasRwdlylesvedskihwfsiinslvivlllslivavillrtlrkdiaryneeeeee.aqeesgWKlvhgdVfrpPknsllLsvlvGsGvq 273
                 ++s+ + wasRwdlyl  + d+++hwfsi+nslviv+lls+iva+i++rtlr+d+a+yn+ ee+e + eesgWKlvh+dV r+P n++lL++ vG+G q
  KOO21987.1 246 EHSD-IAWASRWDLYL-YMGDDQVHWFSILNSLVIVFLLSGIVAMIMVRTLRRDLAEYNSIEEKEeLLEESGWKLVHADVLRTPPNATLLACSVGTGSQ 342
                 ***7.***********.79999**************************************87776688******************************* PP

       EMP70 274 lllmalvtlllallgflspsnrgslltvalllyvllgliaGYvsarlyktfggekwkkntlltalllpgllflvffllnlilwakessgalpfgtlvll 372
                 ll+m+ +++++a+lgflsp+nrgs+ltv lll+vl+g +aGY+++ +yk+f+g++wk  tllta+l pg++f +fflln+++w+k+ssga+p+gt+++l
  KOO21987.1 343 LLCMSAISIACAALGFLSPANRGSMLTVTLLLFVLMGSVAGYAASLTYKSFKGQQWKALTLLTAFLWPGITFGIFFLLNFFIWGKASSGAVPIGTFFAL 441
                 *************************************************************************************************** PP

       EMP70 373 lllwflisvPlvliGsllgfkkkaiehpvrtnqiprqipkqpwylkpllsvllgGilpFgaifielyfilsslwlekiYylfgfLflvfllliittaev 471
                 l++wf+is+Plv +G +lg++k+ ++ pv+tn +pr ip+q+wyl+pl+++++gGilpFga+fielyfi+ss+wl+++Yy+fgfL+lv+++l+it+ae+
  KOO21987.1 442 LCMWFIISFPLVWVGVWLGYRKTLADPPVKTNMVPRVIPSQAWYLHPLFTMVVGGILPFGAVFIELYFIMSSVWLQRFYYVFGFLALVLFILVITCAEM 540
                 *********************9766************************************************************************** PP

       EMP70 472 tilltYfqLcaedyrWwWrSflvggssalYvflysiyYyftklkisg 518
                 +i+l+YfqLc+e+y W+Wr+fl++gs +l++f ys++Y+   l+i g
  KOO21987.1 541 AIVLCYFQLCNENYLWQWRAFLNTGSAGLFLFGYSFVYFSGTLEIMG 587
                 ***************************************99999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (631 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1011  (0.0563891); expected 358.6 (0.02)
Passed bias filter:                      448  (0.0249875); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.66u 0.27s 00:00:00.93 Elapsed: 00:00:00.43
# Mc/sec: 4456.86
//
Query:       KOO21988.1  [L=268]
Description: hypothetical protein Ctob_000447, partial [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (268 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      3617  (0.20174); expected 358.6 (0.02)
Passed bias filter:                      762  (0.042501); expected 358.6 (0.02)
Passed Vit filter:                       253  (0.0141112); expected 17.9 (0.001)
Passed Fwd filter:                       116  (0.00646996); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 1.91u 0.42s 00:00:02.33 Elapsed: 00:00:00.57
# Mc/sec: 1421.72
//
Query:       KOO21989.1  [L=186]
Description: hypothetical protein Ctob_000444 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0033   17.5   0.3     0.0033   17.5   0.3    2.1  2  Band_7     SPFH domain / Band 7 family
  ------ inclusion threshold ------
      0.053   13.5  10.8      0.079   13.0  10.8    1.2  1  Cep57_CLD  Centrosome localisation domain of Cep57


Domain annotation for each model (and alignments):
>> Band_7  SPFH domain / Band 7 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5   0.3   3.7e-07    0.0033     117     168 ..       6      66 ..       2      80 .. 0.81
   2 ?   -0.9   4.1      0.16   1.4e+03     137     178 .]      81     123 ..      72     123 .. 0.82

  Alignments for each domain:
  == domain 1  score: 17.5 bits;  conditional E-value: 3.7e-07
      Band_7 117 reelaeelknelneqlrky..Gvevldvritdidpppevaqalaakqaaeaea.......q 168
                  + l e l+++l+ + +++  G+ ++ +r+t++++p+ ++++++a+ a + ++        
  KOO21989.1   6 FSSLDETLQAALQRDIDRWvpGLRIIAIRVTKPTIPKSIQSNYEAVEAERTRLkvveekhT 66 
                 57889999**********9556*************************99999977765442 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 0.16
      Band_7 137 vevldvr.itdidpppevaqalaakqaaeaeaqaeiaraeaea 178
                 ve + +  ++++ ++ +++q + + + ae+ +q  +++++aea
  KOO21989.1  81 VEAEKLAaVEAVALELKLKQKQSEQAIAEISNQMLANNSKAEA 123
                 55555555899999999999999999999999**999999997 PP

>> Cep57_CLD  Centrosome localisation domain of Cep57
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0  10.8   8.8e-06     0.079      89     178 .]      52     141 ..      47     141 .. 0.83

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 8.8e-06
   Cep57_CLD  89 saekerkavlekqasl.ekekkqesselqaklekLekLEkeylrLtatqklaekkikeLeekLkeEehqrklvqdkaaqlqteleanrill 178
                 +ae+ r +v+e++ ++ ++e ++e++++  + ekL  +E   l+L+ +qk++e+ i+e+ +++  ++ +         +l++e+ean +ll
  KOO21989.1  52 EAERTRLKVVEEKHTVvKREAETEKMRALVEAEKLAAVEAVALELKLKQKQSEQAIAEISNQMLANNSK-AEADAYFYRLKREAEANSLLL 141
                 488889899986665505566999*************************************99987654.445667788999999988775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (186 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1589  (0.0886274); expected 358.6 (0.02)
Passed bias filter:                      542  (0.0302304); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.44u 0.26s 00:00:00.70 Elapsed: 00:00:00.42
# Mc/sec: 1334.96
//
Query:       KOO21990.1  [L=1164]
Description: achain structural determinant protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    4.9e-08   33.5   0.0    1.7e-06   28.6   0.0    2.6  2  Ank_2           Ankyrin repeats (3 copies)
    8.6e-06   25.9   0.0     0.0021   18.3   0.0    2.9  2  Ank_5           Ankyrin repeats (many copies)
    3.4e-05   24.3   0.0     0.0002   21.8   0.0    2.2  2  Ank_4           Ankyrin repeats (many copies)
      7e-05   22.2   0.0    0.00014   21.2   0.0    1.4  1  ART             NAD:arginine ADP-ribosyltransferase
    0.00026   20.4   0.0     0.0021   17.5   0.0    2.5  3  ADPrib_exo_Tox  ADP-ribosyltransferase exoenzyme
  ------ inclusion threshold ------
      0.026   15.1   0.0         14    6.7   0.0    2.8  2  Ank_3           Ankyrin repeat
      0.058   13.9   0.0        2.6    8.7   0.0    2.8  2  Ank             Ankyrin repeat
      0.058   14.0   7.8      0.045   14.4   4.7    2.5  1  SlyX            SlyX
      0.073   12.1   1.9       0.16   11.0   1.9    1.5  1  Atg14           Vacuolar sorting 38 and autophagy-related sub
      0.089   12.0   6.0       0.83    8.8   2.4    2.7  3  HAP1_N          HAP1 N-terminal conserved region
      0.093   13.0   0.6       0.22   11.8   0.6    1.7  1  zf-C4H2         Zinc finger-containing protein
       0.13   12.4   2.4       0.38   10.8   2.4    1.8  1  ADIP            Afadin- and alpha -actinin-Binding


Domain annotation for each model (and alignments):
>> Ank_2  Ankyrin repeats (3 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.8   0.0   0.00078       1.2      51      82 ..    1053    1084 ..    1033    1085 .. 0.82
   2 !   28.6   0.0   1.1e-09   1.7e-06       1      73 [.    1059    1147 ..    1059    1155 .. 0.83

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.00078
       Ank_2   51 ndgrtpLhyAarsghleivklLlekgadinlk 82  
                   d + pL++A+++++  +++lL+e+g ++n +
  KOO21990.1 1053 GDSWKPLIWASKENQMMVAELLIEHGYSVNEQ 1084
                  45789******999999999999*99999975 PP

  == domain 2  score: 28.6 bits;  conditional E-value: 1.1e-09
       Ank_2    1 LhlAakngnlelvklLl.egadpn...k......ngktaLhyAakngnleivklLleh......adndgrtpLhyAarsghleivklLl 73  
                  L++A+k+++  + +lL+ +g+ +n   +       g  +Lh+ a++g++e++ +Lle+       d++g+tp ++A ++g++e+v++L 
  KOO21990.1 1059 LIWASKENQMMVAELLIeHGYSVNeqeStldkalSGYVPLHWTAQKGHKEMLLMLLEKgavpviKDKHGNTPKQLAQKKGYSELVNILE 1147
                  6788887756566777799999988651566799**********************9888898777***********99*******994 PP

>> Ank_5  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.3   0.0    0.0081        12      14      51 ..    1055    1090 ..    1042    1093 .. 0.82
   2 !   18.3   0.0   1.4e-06    0.0021       7      56 .]    1085    1134 ..    1082    1134 .. 0.91

  Alignments for each domain:
  == domain 1  score: 6.3 bits;  conditional E-value: 0.0081
       Ank_5   14 gggntpLhvAakygaadvvrlLlargadlnltdsrGlt 51  
                   +   pL++A+k +   v++lL+++g + n ++s  + 
  KOO21990.1 1055 SW--KPLIWASKENQMMVAELLIEHGYSVNEQESTLDK 1090
                  33..8**************************9987655 PP

  == domain 2  score: 18.3 bits;  conditional E-value: 1.4e-06
       Ank_5    7 advnrldgggntpLhvAakygaadvvrlLlargadlnltdsrGltaldlA 56  
                  +++ ++   g+ pLh+ a +g+ +++++Ll+ ga + ++d++G+t+ +lA
  KOO21990.1 1085 ESTLDKALSGYVPLHWTAQKGHKEMLLMLLEKGAVPVIKDKHGNTPKQLA 1134
                  667788899************************************97776 PP

>> Ank_4  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.8   0.0   1.4e-07    0.0002       3      55 .]    1057    1114 ..    1056    1114 .. 0.88
   2 !    9.8   0.0   0.00081       1.2       4      51 ..    1097    1143 ..    1094    1146 .. 0.84

  Alignments for each domain:
  == domain 1  score: 21.8 bits;  conditional E-value: 1.4e-07
       Ank_4    3 taLhyaaisgrlelvrlLlekgadinaq...dn..rsGetalhiAakrgnveilklLl 55  
                  ++L +a +++++ +++lL+e+g ++n+q   ++   sG  +lh  a++g++e+l +Ll
  KOO21990.1 1057 KPLIWASKENQMMVAELLIEHGYSVNEQestLDkaLSGYVPLHWTAQKGHKEMLLMLL 1114
                  6899************************765333355999****************98 PP

  == domain 2  score: 9.8 bits;  conditional E-value: 0.00081
       Ank_4    4 aLhyaaisgrlelvrlLlekgadinaqdnrsGetalhiAakrgnveil 51  
                  +Lh+ a++g+ e++  Llekga +   +++ G+t+ + A k+g+ e +
  KOO21990.1 1097 PLHWTAQKGHKEMLLMLLEKGAVPVI-KDKHGNTPKQLAQKKGYSELV 1143
                  79*******************95544.599999998888888877766 PP

>> ART  NAD:arginine ADP-ribosyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.2   0.0   9.5e-08   0.00014      70     202 ..     628     780 ..     589     795 .. 0.76

  Alignments for each domain:
  == domain 1  score: 21.2 bits;  conditional E-value: 9.5e-08
         ART  70 laYtssselyrelneavreaGrsreeyls........nfdfkalhfyLtraLqlLrkdsqrcsqvyRgvkglrf.....srakkgksvRfg...qFtss 152
                  +Yt+   +y + n+ +r   +sr  yl          +d+ +   ++ +   +L+k   ++ +v+Rgv+g  +      + +    vR g    F s+
  KOO21990.1 628 RLYTGP--MYAKYNAVLRA--KSRVPYLVgvakelciGNDYCTTIHAINSCVLKLSK-LTKACNVWRGVQGALLpkefwVPNEL--GVRGGieyGFSST 719
                 578877..99999999995..7776665322222222799***99************.555568******76541110133444..499886567**** PP

         ART 153 slkkkvae........efgqdtllsiktcl...gvpIkefskfpsedevLIppfevFkvtn 202
                  ++k++a           +  t+++++  +   g+++  +s++p+e+evL+pp++  +  +
  KOO21990.1 720 TTDKEQAIlyasagakPGDAMTIFEMRMGMvdrGADLTWLSQYPHEKEVLLPPLTGVEALQ 780
                 ******998888888667788******9865669********************9877766 PP

>> ADPrib_exo_Tox  ADP-ribosyltransferase exoenzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5   0.0   1.4e-06    0.0021      25     162 ..     628     771 ..     611     782 .. 0.76
   2 ?   -2.5   0.0       1.8   2.6e+03      52      68 ..     875     891 ..     866     894 .. 0.78
   3 ?   -3.7   0.0       4.1   6.1e+03     113     139 ..     978    1003 ..     957    1005 .. 0.73

  Alignments for each domain:
  == domain 1  score: 17.5 bits;  conditional E-value: 1.4e-06
                     HHHCCTTHHHHHHHHHCTTTSGGGS-SCHHHHH..........HHHHHHHCCT-.B-SS-EEEEEEE-GGGG-HHHHTT-HHHHHHHHHHHTT-E CS
  ADPrib_exo_Tox  25 reYtgsgysdINnyLrqnkgerndldkselekk..........iknldsaleks.ripeniivYRrvdeaelgleldskneekvsefeakvkgkv 108
                     r Ytg  y++ N  Lr +    +  +   + k+          i+ ++s + k  ++++   v+R+v+ a l +e+ +          + +  + 
      KOO21990.1 628 RLYTGPMYAKYNAVLRAKSRVPY--L-VGVAKElcigndycttIHAINSCVLKLsKLTKACNVWRGVQGALLPKEFWV---------PNELGVRG 710
                     67999999999999988873333..2.334444445566677799999998888799999999999977777443333.........34555677 PP

                     EEESS-EEEESSSS....SCCCTTT....SEEEEEEE-TTSBEEE-CCCSSSGCG-EEEE- CS
  ADPrib_exo_Tox 109 fkergyvSTslvkd...taasfggr....eilleltvpkgsegayisplslypgeaEvLlp 162
                       e+g++ST+  k+     as g +      ++e++    + ga++  ls+yp e+EvLlp
      KOO21990.1 711 GIEYGFSSTTTDKEqaiLYASAGAKpgdaMTIFEMRMGMVDRGADLTWLSQYPHEKEVLLP 771
                     89************88834444444444588999999999********************9 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 1.8
                     CHHHHHHHHHHHHCCT- CS
  ADPrib_exo_Tox  52 selekkiknldsaleks 68 
                       l k+ik+ld+a++ +
      KOO21990.1 875 RILVKEIKRLDQAMKTT 891
                     567899*******9976 PP

  == domain 3  score: -3.7 bits;  conditional E-value: 4.1
                      S-EEEESSSS.SCCCTTT.SEEEEEEE- CS
  ADPrib_exo_Tox  113 gyvSTslvkdtaasfggr.eilleltvp 139 
                        vSTsl+     s++g  ++  +l++p
      KOO21990.1  978 YHVSTSLSVA--HSLNGItPANSRLEIP 1003
                      4689999987..5554444777777776 PP

>> Ank_3  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.4   0.0     0.024        36       3      30 ..    1056    1082 ..    1054    1083 .. 0.92
   2 ?    6.7   0.0    0.0091        14       5      27 ..    1097    1118 ..    1093    1121 .. 0.89

  Alignments for each domain:
  == domain 1  score: 5.4 bits;  conditional E-value: 0.024
       Ank_3    3 etpLhlAarsgnleivkfLlenkgadvn 30  
                  + pL +A + +   ++++L+e +g  vn
  KOO21990.1 1056 WKPLIWASKENQMMVAELLIE-HGYSVN 1082
                  789******************.8*9998 PP

  == domain 2  score: 6.7 bits;  conditional E-value: 0.0091
       Ank_3    5 pLhlAarsgnleivkfLlenkga 27  
                  pLh+ a  g+ e++ +Lle kga
  KOO21990.1 1097 PLHWTAQKGHKEMLLMLLE-KGA 1118
                  9******************.675 PP

>> Ank  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.1   0.0       0.2   3.1e+02       5      29 ..    1058    1083 ..    1058    1086 .. 0.75
   2 ?    8.7   0.0    0.0017       2.6       2      25 ..    1094    1118 ..    1093    1125 .. 0.87

  Alignments for each domain:
  == domain 1  score: 2.1 bits;  conditional E-value: 0.2
                  HHHHHHHHTTHHHHHHHH.TTTSTTC CS
         Ank    5 PLHlAatngkkriiklLL.hGAnlna 29  
                  PL +A+ +++  +++lL+ hG ++n 
  KOO21990.1 1058 PLIWASKENQMMVAELLIeHGYSVNE 1083
                  888999555555889999***88885 PP

  == domain 2  score: 8.7 bits;  conditional E-value: 0.0017
                  SBBHHHHHHHHTTHHHHHHHH.TTT CS
         Ank    2 GnTPLHlAatngkkriiklLL.hGA 25  
                  G+ PLH+ a+ g+k+++ +LL +GA
  KOO21990.1 1094 GYVPLHWTAQKGHKEMLLMLLeKGA 1118
                  899******************8898 PP

>> SlyX  SlyX
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.4   4.7     3e-05     0.045       2      53 ..     110     161 ..     109     172 .. 0.89

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 3e-05
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-XXXXXX CS
        SlyX   2 eerleeLEiklafqedtieeLndvvaeqqqqidrlqrqlrllaerlkelees 53 
                 e+ +eeLEi++a qe+ + e  + + +q  +i+r++ ++++ ++++ +l+++
  KOO21990.1 110 EADMEELEIRIADQEEDLREQRKKIGQQIFEIARQRGEIARQRDEIGTLKQE 161
                 5679*******************************99999999999888776 PP

>> Atg14  Vacuolar sorting 38 and autophagy-related subunit 14
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   1.9   0.00011      0.16      60     121 ..     104     165 ..      89     186 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00011
       Atg14  60 dkiknkkakleelksliadlrerlqelkdklsqlkkeieekkkklaklsdklkkRrsdlesl 121
                 d++ ++ a++eel ++iad++e l+e ++k+ q+  ei+ ++ ++a+++d++ + +++l ++
  KOO21990.1 104 DELVKREADMEELEIRIADQEEDLREQRKKIGQQIFEIARQRGEIARQRDEIGTLKQELVKV 165
                 66778889999999999999999999999999999999999999999999999888886554 PP

>> HAP1_N  HAP1 N-terminal conserved region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.4   0.0     0.025        37       9      62 ..       7      57 ..       3      66 .. 0.83
   2 ?    8.8   2.4   0.00055      0.83     188     252 ..     105     168 ..      94     198 .. 0.72
   3 ?   -2.9   0.1         2   3.1e+03     159     185 ..     590     614 ..     579     619 .. 0.78

  Alignments for each domain:
  == domain 1  score: 3.4 bits;  conditional E-value: 0.025
      HAP1_N  9 lradslttgyenddWkipapalrpevseelsaeqieetleYflLcservsqvtk 62
                lr d  +t   ++ W ++ p+ +++++++l ++q +e++  f+L  + v+ +  
  KOO21990.1  7 LRLDEQFT-IGQHYW-MQNPYFKDGTKLRLGPSQEDEMMDQFVLNDDEVEVM-E 57
                67777774.445789.*******************************99988.3 PP

  == domain 2  score: 8.8 bits;  conditional E-value: 0.00055
      HAP1_N 188 qLktetdtlEekEqqLvldcveqlseanqqiaelseelarkleelerqqeeissLlaqivdlqqk 252
                 +L +   ++Ee E + ++d  e+l+e +++i +   e+ar++ e++rq++ei +L+ ++v+++  
  KOO21990.1 105 ELVKREADMEELEIR-IADQEEDLREQRKKIGQQIFEIARQRGEIARQRDEIGTLKQELVKVKAA 168
                 445555556666655.5677777888888888777788888888888888888888888777653 PP

  == domain 3  score: -2.9 bits;  conditional E-value: 2
      HAP1_N 159 lqklvqldlLqeklreLeeeNekLree 185
                  +k ++ld+L++k++  ee N +Lr++
  KOO21990.1 590 CRKPMTLDALKQKME--EEGNVRLRKD 614
                 55678999**99998..6889999976 PP

>> zf-C4H2  Zinc finger-containing protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.6   0.00015      0.22      49     109 ..     101     161 ..      81     278 .. 0.81

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 0.00015
     zf-C4H2  49 aHveeLrlIhaDinalEsvikeaeeekekslekakklyeeykklkeevnelrselglekle 109
                   v+eL + +aD+++lE  i + ee+ +++ +k+ + + e+++ + e+ + r e+g  k e
  KOO21990.1 101 MAVDELVKREADMEELEIRIADQEEDLREQRKKIGQQIFEIARQRGEIARQRDEIGTLKQE 161
                 568999999*********************************************9875444 PP

>> ADIP  Afadin- and alpha -actinin-Binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   2.4   0.00025      0.38      64     121 ..     108     165 ..      94     180 .. 0.60

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00025
        ADIP  64 kleaeierlqskierlktqleqlerelalvqakerqlekklktleqklknekeelqrl 121
                 k ea++e l+ +i   ++ l ++++++ ++ ++ + ++ +++++ + + ++k+el + 
  KOO21990.1 108 KREADMEELEIRIADQEEDLREQRKKIGQQIFEIARQRGEIARQRDEIGTLKQELVKV 165
                 4455555555555555555555555555555555555555555555555555555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1164 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       794  (0.0442858); expected 358.6 (0.02)
Passed bias filter:                      509  (0.0283898); expected 358.6 (0.02)
Passed Vit filter:                        51  (0.00284455); expected 17.9 (0.001)
Passed Fwd filter:                        14  (0.000780858); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.83u 0.27s 00:00:01.10 Elapsed: 00:00:00.44
# Mc/sec: 7930.77
//
Query:       KOO21991.1  [L=175]
Description: hypothetical protein Ctob_000455 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.9e-09   37.7   0.0    2.9e-09   37.1   0.0    1.5  1  PC-Esterase  GDSL/SGNH-like Acyl-Esterase family found in Pmr


Domain annotation for each model (and alignments):
>> PC-Esterase  GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.1   0.0   1.6e-13   2.9e-09     222     282 ..      96     161 ..       7     162 .. 0.80

  Alignments for each domain:
  == domain 1  score: 37.1 bits;  conditional E-value: 1.6e-13
  PC-Esterase 222 kekktrvellditklselRkDgHpsvyrkkkekak......aeksqnDClHWCLpGvpDtWnelLla 282
                   + ++r+ +l+++  ++ R+DgH++  ++ +++        ++    DClH+C pG+ D W   L++
   KOO21991.1  96 GTLGQRFAFLNVSF-MDARADGHVASSMRYSPTTGefsgptKTGFPIDCLHYCYPGPTDFWALALYN 161
                  56789*******86.588*******9999988777776653388899**************988875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (175 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       232  (0.0129399); expected 358.6 (0.02)
Passed bias filter:                      209  (0.0116571); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.27s 00:00:00.66 Elapsed: 00:00:00.41
# Mc/sec: 1268.65
//
Query:       KOO21992.1  [L=483]
Description: hypothetical protein Ctob_000454 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.32   11.5   3.4       0.23   11.9   0.7    2.1  2  DUF4072   Domain of unknown function (DUF4072)


Domain annotation for each model (and alignments):
>> DUF4072  Domain of unknown function (DUF4072)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.1      0.31   5.6e+03      14      24 ..     364     374 ..     361     375 .. 0.82
   2 ?   11.9   0.7   1.3e-05      0.23      14      37 ..     418     441 ..     411     446 .. 0.90

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 0.31
     DUF4072  14 letLaaLagAs 24 
                  ++L++L+++s
  KOO21992.1 364 VAQLVKLSSSS 374
                 689*****987 PP

  == domain 2  score: 11.9 bits;  conditional E-value: 1.3e-05
     DUF4072  14 letLaaLagAsrieridaqAaRll 37 
                 +e La+Lag++ + ++++qA Rl 
  KOO21992.1 418 IEMLARLAGSAIVKQLTDQAHRLA 441
                 789*******************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (483 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       561  (0.0312901); expected 358.6 (0.02)
Passed bias filter:                      403  (0.0224776); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.25s 00:00:00.74 Elapsed: 00:00:00.39
# Mc/sec: 3709.73
//
Query:       KOO21993.1  [L=331]
Description: hypothetical protein Ctob_000457 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (331 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      3315  (0.184896); expected 358.6 (0.02)
Passed bias filter:                      586  (0.0326845); expected 358.6 (0.02)
Passed Vit filter:                        74  (0.00412739); expected 17.9 (0.001)
Passed Fwd filter:                        19  (0.00105974); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.81u 0.32s 00:00:01.13 Elapsed: 00:00:00.46
# Mc/sec: 2178.62
//
Query:       KOO21994.1  [L=221]
Description: protein c7orf62 like protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    0.00011   22.3   0.0    0.00021   21.4   0.0    1.4  1  BLUF      Sensors of blue-light using FAD


Domain annotation for each model (and alignments):
>> BLUF  Sensors of blue-light using FAD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.4   0.0   1.2e-08   0.00021      33      90 ..      54     112 ..      50     114 .. 0.93

  Alignments for each domain:
  == domain 1  score: 21.4 bits;  conditional E-value: 1.2e-08
                 HTEEEEEEEETTEEEEEEEEEHHHHHHHHHHHHT-TTEEEEEEEEEEE.ESS-SSTTCS CS
        BLUF  33 lgitGvLlydegvflQvLEGeeeaveelyerIkkDpRhkdvevleeee.ieersFskws 90 
                 +++tG+L+   +  +Q +EG+++++   ++ +++ +  ++ +vl ++e +++r F++ws
  KOO21994.1  54 NSVTGLLVLLPEGWFQTIEGPAADIPPFLQALRHCSLLRSTTVLACQEdVRTRYFPHWS 112
                 68**********************************9999999998777*********8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (221 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       281  (0.0156729); expected 358.6 (0.02)
Passed bias filter:                      274  (0.0152825); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.24s 00:00:00.65 Elapsed: 00:00:00.41
# Mc/sec: 1602.73
//
Query:       KOO21995.1  [L=192]
Description: hypothetical protein Ctob_000450 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      0.007   16.5   0.0      0.012   15.7   0.0    1.4  1  DnaJ      DnaJ domain


Domain annotation for each model (and alignments):
>> DnaJ  DnaJ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.0   6.6e-07     0.012      15      51 ..     131     166 ..     109     168 .. 0.90

  Alignments for each domain:
  == domain 1  score: 15.7 bits;  conditional E-value: 6.6e-07
                 HHHHHHHHHHHHHHSTTTSCCHHHHHHHHHHHHHHHH CS
        DnaJ  15 deIkkaYrklalkyHPDknpkdpeaeekFkeineAye 51 
                  ++++a+   a+++HPD+  + p a+++   +neAy 
  KOO21995.1 131 RTLRAAFCAVAMEVHPDRL-NTPLAAQAMIVLNEAYR 166
                 57899************99.899************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (192 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       499  (0.027832); expected 358.6 (0.02)
Passed bias filter:                      369  (0.0205812); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.24s 00:00:00.64 Elapsed: 00:00:00.40
# Mc/sec: 1455.60
//
Query:       KOO21996.1  [L=342]
Description: homeodomain-like domain protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.3e-12   47.6   0.0      2e-12   47.1   0.0    1.3  1  DDE_3     DDE superfamily endonuclease
     0.0008   19.1   0.2      0.011   15.5   0.0    2.4  2  HTH_23    Homeodomain-like domain
  ------ inclusion threshold ------
      0.013   16.1   0.0       0.06   14.0   0.0    2.1  2  HTH_32    Homeodomain-like domain
      0.015   15.4   0.6       0.34   11.1   0.0    2.7  2  HTH_28    Helix-turn-helix domain
       0.79   10.1   3.8        1.1    9.7   0.1    2.8  3  HTH_31    Helix-turn-helix domain


Domain annotation for each model (and alignments):
>> DDE_3  DDE superfamily endonuclease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.1   0.0   5.7e-16     2e-12       2     124 ..     155     284 ..     154     304 .. 0.89

  Alignments for each domain:
  == domain 1  score: 47.1 bits;  conditional E-value: 5.7e-16
       DDE_3   2 vvfiDEsgfqlgt.vrrrawakkGkr..erleeygrrgrvnligaldekgglafvtfeetlnaedfaeflerlletalqak.......kivlilDnasi 90 
                 ++ +DE+  + ++ +   +w+ +G+    r+e ++r+grv+++  ++++g +   + ++t++a++f++ l+++l + lqa+         vli+Dnasi
  KOO21996.1 155 ILALDETAKDRRAyRSTIGWGLRGRAptVRDEFRTRGGRVSALTIVSHRGFEDWRFNDGTFKADSFQASLDAMLIHTLQADgqslashFKVLIMDNASI 253
                 6789*********888889*******534499999********************************************99*****99899******** PP

       DDE_3  91 HkseslrelveeeadrlellylPpySPelNpiEi 124
                 Hk ++ + ++ +    +++ ++Ppy+ +l p  +
  KOO21996.1 254 HKDADYVFHLGT---HIKVRFIPPYCYHLSPLDN 284
                 ***********9...9*************99865 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.0   3.1e-06     0.011       6      45 ..      12      57 ..       7      62 .. 0.86
   2 ?    0.9   0.1      0.12   4.2e+02      29      40 ..     108     119 ..     108     130 .. 0.87

  Alignments for each domain:
  == domain 1  score: 15.5 bits;  conditional E-value: 3.1e-06
      HTH_23  6 eRlrillllae......GlsvreIAreLgvsrrTvyrwlkryreeG 45
                +R  +++ la+      Gl+ re+ ++L+vs     rwl+++++ G
  KOO21996.1 12 KRVAAIRWLAVfkrttlGLTAREVTEHLHVSDTSQKRWLSTFKKTG 57
                6778888888777778**************************8887 PP

  == domain 2  score: 0.9 bits;  conditional E-value: 0.12
      HTH_23  29 vsrrTvyrwlkr 40 
                 vs rT++r+l++
  KOO21996.1 108 VSLRTLCRVLHA 119
                 899******997 PP

>> HTH_32  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.0   1.7e-05      0.06       4      73 .]      48     117 ..      45     117 .. 0.79
   2 ?   -1.6   0.0       1.2   4.4e+03      68      68 ..     171     171 ..     125     199 .. 0.57

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 1.7e-05
      HTH_32   4 rwlkRyneeGlegLkdrprr.grprklsdevrariiallreeprWsprqlaarlaere.gvkvShstvyriL 73 
                 rwl  ++++G + + +++ + grpr l+++++  +++++ + p+ ++ + +a +     g++vS +t  r+L
  KOO21996.1  48 RWLSTFKKTG-DVFPPKSGAqGRPRALTKDEEFDLVNRVLDSPTTTLGKQHALI-YLAsGEVVSLRTLCRVL 117
                 9********9.88889988878***76666666666666589999999988877.5554889****998887 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 1.2
      HTH_32  68 t 68 
                 t
  KOO21996.1 171 T 171
                 2 PP

>> HTH_28  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   9.4e-05      0.34       2      49 ..      13      65 ..      12      71 .. 0.79
   2 ?    1.9   0.1     0.072   2.6e+02       2      30 ..      95     128 ..      95     130 .. 0.70

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 9.4e-05
      HTH_28  2 Rleiiklla..a....GhsvreaArelgisrrtvyrWikryeegGiagLvprrr 49
                R  +i++la  +    G ++re+ ++l++s ++ +rW++ + + G +   p+++
  KOO21996.1 13 RVAAIRWLAvfKrttlGLTAREVTEHLHVSDTSQKRWLSTFKKTG-DVFPPKSG 65
                677788887664566566***************************.57777765 PP

  == domain 2  score: 1.9 bits;  conditional E-value: 0.072
      HTH_28   2 RleiikllaaGh..svre...aArelgisrrtvy 30 
                 + +++ +la+G+  s r    + ++++++r++++
  KOO21996.1  95 KQHALIYLASGEvvSLRTlcrVLHAHNLCRQRIQ 128
                 5689999999976788874445566666888775 PP

>> HTH_31  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   0.1    0.0003       1.1      10      35 ..      25      50 ..      13      60 .. 0.91
   2 ?   -1.1   0.0      0.72   2.6e+03      41      62 ..     107     128 ..     102     130 .. 0.69
   3 ?   -0.7   0.2      0.52   1.9e+03      28      46 ..     169     187 ..     156     196 .. 0.80

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 0.0003
      HTH_31 10 ReraGLsqeevAerlgvsestlsrlE 35
                R+  GL+ +ev e+l+vs +   r+ 
  KOO21996.1 25 RTTLGLTAREVTEHLHVSDTSQKRWL 50
                7778****************999986 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 0.72
      HTH_31  41 rpspavlealaralgldpaera 62 
                 ++s+++l ++++a++l +   +
  KOO21996.1 107 VVSLRTLCRVLHAHNLCRQRIQ 128
                 4788888888888887555555 PP

  == domain 3  score: -0.7 bits;  conditional E-value: 0.52
      HTH_31  28 estlsrlEqGrrgrpspav 46 
                 +st+++  +Gr + ++ ++
  KOO21996.1 169 RSTIGWGLRGRAPTVRDEF 187
                 7899999999998887765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (342 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       356  (0.0198561); expected 358.6 (0.02)
Passed bias filter:                      320  (0.0178482); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.41u 0.23s 00:00:00.64 Elapsed: 00:00:00.37
# Mc/sec: 2773.37
//
Query:       KOO21997.1  [L=435]
Description: hypothetical protein Ctob_000452 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (435 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       765  (0.0426683); expected 358.6 (0.02)
Passed bias filter:                      490  (0.02733); expected 358.6 (0.02)
Passed Vit filter:                        54  (0.00301188); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.55u 0.23s 00:00:00.78 Elapsed: 00:00:00.41
# Mc/sec: 3213.62
//
Query:       KOO21998.1  [L=141]
Description: hypothetical protein Ctob_000459 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.2e-25   88.5   5.4    3.3e-25   88.0   5.4    1.2  1  SLBP_RNA_bind  Histone RNA hairpin-binding protein RNA-bindin


Domain annotation for each model (and alignments):
>> SLBP_RNA_bind  Histone RNA hairpin-binding protein RNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   88.0   5.4   1.9e-29   3.3e-25       1      67 [.      55     120 ..      55     121 .. 0.98

  Alignments for each domain:
  == domain 1  score: 88.0 bits;  conditional E-value: 1.9e-29
  SLBP_RNA_bind   1 ederrlaqRqkqIdlGKntegYerYlkavpkekrkkkehPktPdkeqkvSkrswdgqikkWRrqLhk 67 
                    +d+++l+qRqkqIdlGKnt +YerY + v++++r+ + +P+tPd ++  Skr++dg++k+WRr+Lh+
     KOO21998.1  55 TDPHKLQQRQKQIDLGKNTLAYERYARDVKRHNRQ-RGDPRTPDITEPDSKRQFDGRVKEWRRKLHQ 120
                    689********************************.89****************************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (141 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       469  (0.0261587); expected 358.6 (0.02)
Passed bias filter:                      318  (0.0177366); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.24s 00:00:00.63 Elapsed: 00:00:00.40
# Mc/sec: 1045.99
//
Query:       KOO21999.1  [L=657]
Description: mmpl domain-containing protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
      2e-49  168.4  14.8    6.3e-26   91.1   0.6    2.7  2  MMPL          MMPL family
  ------ inclusion threshold ------
       0.12   11.8   0.1       0.12   11.8   0.1    3.6  5  E1-E2_ATPase  E1-E2 ATPase


Domain annotation for each model (and alignments):
>> MMPL  MMPL family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   80.7   7.7     1e-26     9e-23     148     311 ..       3     164 ..       1     223 [. 0.83
   2 !   91.1   0.6     7e-30   6.3e-26     124     315 ..     425     630 ..     365     640 .. 0.80

  Alignments for each domain:
  == domain 1  score: 80.7 bits;  conditional E-value: 1e-26
        MMPL 148 ievvtlvvilviLlivyrSlvaallplltvvvsllaalglvlila.lllglelstfvlgllvvlliavGtDYallLvsRyreela.agedreeavirav 244
                 + ++t+ ++l++L i++r++   ll l+ +    ++ l++v+i+   ++ +++s+++++l+v++++a ++DY l+L++R+  e++ + +d ++a++ ++
  KOO21999.1   3 LSTMTAPIALALLGIMLRNVRQLLLTLANIF---GCILASVVIMDpIAANMQVSSQAPALMVAVGLAMSIDYSLFLLTRFNVEVHvQRRDFNRALQLTL 98 
                 5679999***************999999886...5556665555514567*******************************888724556678****** PP

        MMPL 245 astgkvvtaaGltvaiamlgLvvarlpvlaqvGvaialGvlvdvlivlTllPAllvllGraalakpr 311
                  ++g++v+ +G t+++ +lg++++ +++++++G+a+al+v+++++ +l l+P ll +  r+   ++r
  KOO21999.1  99 ETSGHTVLVSGSTLCLCFLGMLLIPVSSIRSMGIAAALTVMFAIFFSLLLTPTLLLTCPRF-FTANR 164
                 ********************************************************99888.33333 PP

  == domain 2  score: 91.1 bits;  conditional E-value: 7e-30
        MMPL 124 kvevtGpaatladlrdasdrdlklievvtlvvilviLlivyrSlvaallplltvvvsllaalgl.vlilalllgl............elstfvlgllvv 209
                  ++ t +++   d +  + ++l  ++ +tlv++ ++Ll +++S+ ++l  +l  +  l++++g+ v i ++                +l ++++ +++ 
  KOO21999.1 425 SIYFTSTPLSQMDAATDTFNSLPRVIGATLVIVCIMLLFAFKSVFMPLRAVLCLIWMLVVTFGSaVGIYQDGWLDglgwgslqpvsgGLFWMSPCIAFS 523
                 468888888888888888889999999*****************999888888888888888887877776543300111111112245689999**** PP

        MMPL 210 lliavGtDYallLvsRyreelaagedreeaviravastgkvvtaaGltvaiamlgLvvarlpvlaqvGvaialGvlvdvlivlTll.PAllvllGraal 307
                 ++++ G DY ++++    e  ++g+d+++av + + +tg+ +  aGl++ +a+ +Lv+ + p+l+q+G ++ +Gvl+d +++  ++ P  ++l+   + 
  KOO21999.1 524 IVVGLGLDYDIFFMESVAEFYDEGHDSKTAVVKGLEQTGNIICVAGLIMFVAFGALVLGNSPTLNQIGYMLCMGVLLDCFVTTKVIiPCAMALMPGDGN 622
                 ***************************************************************************************988888766666 PP

        MMPL 308 akprrkrk 315
                 ++pr+++k
  KOO21999.1 623 FWPRKRQK 630
                 67766655 PP

>> E1-E2_ATPase  E1-E2 ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.0   1.2      0.98   8.8e+03     115     154 ..      26      65 ..       8      69 .. 0.46
   2 ?   -4.1   1.1       1.1   9.6e+03     148     156 ..     130     138 ..      94     155 .. 0.49
   3 ?    0.1   0.1     0.056     5e+02     144     169 ..     218     243 ..     209     250 .. 0.75
   4 ?   -1.1   1.7      0.13   1.2e+03     124     158 ..     448     485 ..     429     493 .. 0.58
   5 ?   11.8   0.1   1.4e-05      0.12      94     166 ..     537     617 ..     534     618 .. 0.89

  Alignments for each domain:
  == domain 1  score: -4.0 bits;  conditional E-value: 0.98
                   HHHHHHHHHHHHHHHHHHHHHS-STTTSSTTHHHHHHHHH CS
  E1-E2_ATPase 115 ldklgkvlvpvvlliallvflialllgkslaeallralal 154
                   l  l++++ ++   ++++  ++a +   s a al+ a++l
    KOO21999.1  26 LLTLANIFGCILASVVIMDPIAANMQVSSQAPALMVAVGL 65 
                   3333333333333333333333333333333555555555 PP

  == domain 2  score: -4.1 bits;  conditional E-value: 1.1
                   HHHHHHHHH CS
  E1-E2_ATPase 148 llralallv 156
                   +  a al v
    KOO21999.1 130 MGIAAALTV 138
                   222222222 PP

  == domain 3  score: 0.1 bits;  conditional E-value: 0.056
                   TTHHHHHHHHHHHHHS-TTHHHHHHH CS
  E1-E2_ATPase 144 laeallralallvaaiPcaLplavpl 169
                   + +a l+a++llva + ++ p a+pl
    KOO21999.1 218 VSQAPLFAVVLLVACVAIGVPFAFPL 243
                   44788889999999888888888876 PP

  == domain 4  score: -1.1 bits;  conditional E-value: 0.13
                   HHHHHHHHHHHHS-STTTSSTT...HHHHHHHHHHHHH CS
  E1-E2_ATPase 124 pvvlliallvflialllgksla...eallralallvaa 158
                    v+ + +++v++++l+ +ks++   +a+l  + +lv++
    KOO21999.1 448 RVIGATLVIVCIMLLFAFKSVFmplRAVLCLIWMLVVT 485
                   44445555555555555555533336666666666654 PP

  == domain 5  score: 11.8 bits;  conditional E-value: 1.4e-05
                   TTTTSTTS--------HHHHHHHHHHHHHHHHHHHHHHHHHHS-STTTSSTT........HHHHHHHHHHHHHS-TTHHHH CS
  E1-E2_ATPase  94 lgkiarlveeakskktplqkkldklgkvlvpvvlliallvflialllgksla........eallralallvaaiPcaLpla 166
                   ++ +a+   e + +kt ++k l++ g+++ +++l++++++ ++ l +  +l+          ll  +++  ++iPca++l+
    KOO21999.1 537 MESVAEFYDEGHDSKTAVVKGLEQTGNIICVAGLIMFVAFGALVLGNSPTLNqigymlcmGVLLDCFVTTKVIIPCAMALM 617
                   567888999999*****************99999999999988877777766*******999999*************985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (657 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       906  (0.0505327); expected 358.6 (0.02)
Passed bias filter:                      454  (0.0253221); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.67u 0.27s 00:00:00.94 Elapsed: 00:00:00.43
# Mc/sec: 4568.21
//
Query:       KOO22000.1  [L=436]
Description: l-rhamnonate dehydratase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.8e-50  171.6   0.0    2.5e-50  171.1   0.0    1.1  1  MR_MLE_C  Enolase C-terminal domain-like
    1.6e-12   47.7   0.1    3.4e-12   46.6   0.0    1.6  2  MR_MLE_N  Mandelate racemase / muconate lactonizing enzyme, N


Domain annotation for each model (and alignments):
>> MR_MLE_C  Enolase C-terminal domain-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  171.1   0.0   2.8e-54   2.5e-50      11     217 ..     188     401 ..     182     404 .. 0.93

  Alignments for each domain:
  == domain 1  score: 171.1 bits;  conditional E-value: 2.8e-54
                 HHHT-SEEEEETSSS......HHHHHHHHHHHHHHHHTTTSTSEEEEE-TTTSBHHHHHHHHHHHGGGTESEEESSSSTTTHHHHHHHHHH..HH.SSE CS
    MR_MLE_C  11 aeqgfravKlkvggd......dvaedvervravreavgpgddvdlmvDanqawdlatAirvareleeldllwlEEPvppeddleglaelra..ra.sip 100
                 ++ gf++ K+    +       +++ ve +++ r++vgp  d+ lm+D+  a++++  i++a++l++l+l w+EE +pp dd++g++e+r+  +  ++ 
  KOO22000.1 188 KKMGFAGAKIPCPYGpadgdeGFRKNVEFFAKWRKEVGP--DFPLMLDCYMAMNVPYTIKLAKALAPLGLKWIEEFLPP-DDYDGYKEVREalKGtGVL 283
                 4558888888877668888889***************77..77************************************.78********987556888 PP

                 EEESTTSSSHHHHHHHHHHTSESEEEEBHHHHTSHHHHHHHHHHHHHTT-EEEEBSCSSHHHHHHHHHHHHTTTTBEEEEEEGGGGH......TSGCSB CS
    MR_MLE_C 101 iaagEslysradfrelleagavdivqpdvsrvgGitearkvaalaeafgvpvapHsgsgglglaaslhlaaaipnllileyfldael......leeell 193
                   +gE++y+r++fr+l++++avd++qpd+++ gG+tear+v+a+a+a+++pv+pH+     + ++s hl  a  n+  +e  + +++          l+
  KOO22000.1 284 TTTGEHEYTRYGFRKLIQDRAVDVLQPDITWLGGLTEARRVVAMAAAYDIPVVPHG-----SSVYSYHLQYAFANCPLAEFITLSPNadailpYFGGLF 377
                 899*****************************************************.....679*******************99999***99999*** PP

                 SSSSEEETTEEECTSSSBTSSEB- CS
    MR_MLE_C 194 eeplevedGrvtvpdgpGlGveld 217
                 ++++ ++dG++++pd+pG+Gv+l 
  KOO22000.1 378 PDEPLPKDGFIDLPDRPGFGVTLC 401
                 *********************986 PP

>> MR_MLE_N  Mandelate racemase / muconate lactonizing enzyme, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.6   0.0   3.8e-16   3.4e-12      30     117 .]      79     168 ..      72     168 .. 0.92
   2 ?   -3.9   0.0       1.8   1.6e+04      37      53 ..     275     291 ..     273     297 .. 0.74

  Alignments for each domain:
  == domain 1  score: 46.6 bits;  conditional E-value: 3.8e-16
                 EEEEEECTTEEEEEEEE-STTGHHHHHHHHHHHHHHHHTTSBTTHHHHHHHHHHHHCSS......CHHHHHHHHHHHHHHHHHHTTSBHHHHTT CS
    MR_MLE_N  30 lvkietseGvvGigeatsvggraetikaelddhlapllvgkdaanisdlaqllkravlg......nmsAkaaidmAlwDlkakalnlpladLlG 117
                 +v++ +++G  Gig  t+ g   e    ++++hl   + g+d+ n+++++ ++ r  +          A++a+d A+wDl++k  n p++ LlG
  KOO22000.1  79 IVEVIAEDGTSGIGVTTA-G---EPGCYIVENHLSRFVEGEDPRNVEQIWDKMWRSTINygrkglPLQAISAVDLAIWDLLGKLRNEPVWALLG 168
                 899999********7654.5...567789**************************999889999999**************************9 PP

  == domain 2  score: -3.9 bits;  conditional E-value: 1.8
                 TTEEEEEEEE-STTGHH CS
    MR_MLE_N  37 eGvvGigeatsvggrae 53 
                 e ++G+g +t+ g  + 
  KOO22000.1 275 EALKGTGVLTTTGEHEY 291
                 56899999999995554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (436 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       219  (0.0122148); expected 358.6 (0.02)
Passed bias filter:                      211  (0.0117686); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.44u 0.24s 00:00:00.68 Elapsed: 00:00:00.38
# Mc/sec: 3397.33
//
Query:       KOO22001.1  [L=473]
Description: hypothetical protein Ctob_000668 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
      0.002   18.2  27.9     0.0036   17.3  11.8    2.8  2  Rootletin       Ciliary rootlet component, centrosome cohesio
  ------ inclusion threshold ------
        1.8    8.5   6.7        2.5    8.0   6.7    1.2  1  TFIIA           Transcription factor IIA, alpha/beta subunit
        3.4    8.4  21.7        4.7    7.9   0.5    3.9  4  YabA            Initiation control protein YabA
          7    7.1   9.3         24    5.4   2.7    2.6  2  DUF4094         Domain of unknown function (DUF4094)


Domain annotation for each model (and alignments):
>> Rootletin  Ciliary rootlet component, centrosome cohesion
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3  11.8     8e-07    0.0036      22     150 ..      13     148 ..       5     150 .. 0.77
   2 !    5.4  11.2    0.0037        16      89     187 ..     137     233 ..     132     234 .. 0.91

  Alignments for each domain:
  == domain 1  score: 17.3 bits;  conditional E-value: 8e-07
   Rootletin  22 qaKvlqYkkrcseleqrllektselektkltlllssareleeeesadl..eealakLeeErqrs.....eklaqvnslLreqleearqaneaLtedlqk 113
                  +K +q + ++++leq+++e ++elek+kl + + ++r+l +e+++d       + L+ E  r      +  ++  +lL+  leear++n +L +++++
  KOO22001.1  13 CEKNQQLRAHVAKLEQHIAELQAELEKKKLIE-TITQRQLLHERTRDAndGMCGSSLRPETSRHifgdgAPNTAGMELLQAALEEARAENTRLASEIKR 110
                 5677899*************999999999854.456777888888777532334678888888533322333556799********************* PP

   Rootletin 114 ltkdwerlreeleqkekewre.eeeafneylssehsrl 150
                 l  ++ r+++   + e+++++ ++e  ++ l +e++rl
  KOO22001.1 111 LALEFGRVTQAHTRAEAQLQQlRREDEKRLLIEENQRL 148
                 ******************99834445666677777776 PP

  == domain 2  score: 5.4 bits;  conditional E-value: 0.0037
   Rootletin  89 vnslLreqleearqaneaLtedlqkltkdwerlreeleqkekewreeeeafneylssehsrllsLWrevvavrrqfselksaterdLsklkseltrtsr 187
                 +  lL e+++   ++n++L ++ qk ++ +  l++++e+ +++w+ +  +  + +++e ++  +   +v+++r+ +s + +a+++  ++++++   t r
  KOO22001.1 137 EKRLLIEENQRLAAENQRLLTSHQKAEATLAILQTNSEKIKERWEGRHANALRRVKEETEH--KVGSKVAKLRKTISAMEMAMKEQARRVETDARVTGR 233
                 567899999*****************************************99999999997..6679******************99999999876665 PP

>> TFIIA  Transcription factor IIA, alpha/beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.0   6.7   0.00055       2.5     122     318 ..      70     262 ..       5     298 .. 0.53

  Alignments for each domain:
  == domain 1  score: 8.0 bits;  conditional E-value: 0.00055
       TFIIA 122 leppvqipagvtlqtasgqlykvnv.qasgaqqiaaqplqqvvqq..sqgsaaqssvaalqaq..sqqaqalaepqqqlekqqqqqqqqqqqqqqq.qv 214
                  e++ +i      +ta ++l++    +a++ + ++a+ ++    +  +  +a++ + a+lq+   + + + l+e++q+l++++q+   ++q+ +++ ++
  KOO22001.1  70 PETSRHIFGDGAPNTAGMELLQAALeEARAENTRLASEIKRLALEfgRVTQAHTRAEAQLQQLrrEDEKRLLIEENQRLAAENQRLLTSHQKAEATlAI 168
                 333345666666677777777666667777888888888877665553333333333334433333455566666666444455544444555555466 PP

       TFIIA 215 qqqqqeesqqaqqasqeqvagsqvessqtdgaedaleeespvlegelsaeeeagaqkeelsreeidrireealkakelekeskkkkraee.ssladlse 312
                  q++ e+ ++         +g+++++  + ++e + +  s+v + ++  ++ + a ke+++r+e d++     + +e+e+++ k+ +++  ++l d + 
  KOO22001.1 169 LQTNSEKIKE-------RWEGRHANALRRVKEETEHKVGSKVAKLRKTISAMEMAMKEQARRVETDAR----VTGREKEEAEVKAMSKAYdNTLLDRTF 256
                 6555432222.......233333434444444444444445545555555555666678888888877....555555555444333222244445555 PP

       TFIIA 313 ilqlDG 318
                  ++l G
  KOO22001.1 257 AVKLNG 262
                 555555 PP

>> YabA  Initiation control protein YabA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.9   0.5    0.0011       4.7      29      62 ..       7      40 ..       2      69 .. 0.55
   2 ?    3.5   0.8     0.025   1.1e+02      24      66 ..      87     129 ..      82     135 .. 0.71
   3 ?    6.7   7.6    0.0025        11       8      58 ..     113     165 ..     107     198 .. 0.69
   4 ?    0.2   0.3      0.27   1.2e+03      25      53 ..     204     219 ..     182     254 .. 0.42

  Alignments for each domain:
  == domain 1  score: 7.9 bits;  conditional E-value: 0.0011
                HHHHHHHHHHHHHHHHHHHHHHHHXXXXXXXXXX CS
        YabA 29 eelaelleenaeLeleneklrerleeeekkekek 62
                +++++++e+n++L++   kl ++++e +++ ++k
  KOO22001.1  7 DRVEHICEKNQQLRAHVAKLEQHIAELQAELEKK 40
                4455566666666666666666653322222222 PP

  == domain 2  score: 3.5 bits;  conditional E-value: 0.025
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHXXXXXXXXXXXXXX CS
        YabA  24 leelkeelaelleenaeLeleneklrerleeeekkekekkkel 66 
                 +e l+++l+e   en++L  e ++l  ++ + ++++++ +++l
  KOO22001.1  87 MELLQAALEEARAENTRLASEIKRLALEFGRVTQAHTRAEAQL 129
                 6778999999999999999999999888754444444444444 PP

  == domain 3  score: 6.7 bits;  conditional E-value: 0.0025
                 HHHHHHHHHHHHHHHHHHHHHHHHHH..HHHHHHHHHHHHHHHHHHHXXXXXX CS
        YabA   8 dkleeleeqleelleeleelkeelae..lleenaeLeleneklrerleeeekk 58 
                  ++ ++++  ++  ++l++l++e ++  l+een++L +en++l +  +++e++
  KOO22001.1 113 LEFGRVTQAHTRAEAQLQQLRREDEKrlLIEENQRLAAENQRLLTSHQKAEAT 165
                 566677788888899999998765543389************98877443332 PP

  == domain 4  score: 0.2 bits;  conditional E-value: 0.27
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHH........X CS
        YabA  25 eelkeelaelleenaeLeleneklrerl........e 53 
                 ++l                     r+++        e
  KOO22001.1 204 AKL---------------------RKTIsamemamkE 219
                 222.....................2222111111110 PP

>> DUF4094  Domain of unknown function (DUF4094)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.0   0.5     0.007        32      56      86 ..      11      41 ..       4      42 .. 0.82
   2 ?    5.4   2.7    0.0054        24      38      82 ..     166     217 ..     120     223 .. 0.66

  Alignments for each domain:
  == domain 1  score: 5.0 bits;  conditional E-value: 0.007
     DUF4094 56 dilgevskthkaiqtLdktissLemeLaaar 86
                +i ++ ++ +  + +L++ i++L+ eL+ ++
  KOO22001.1 11 HICEKNQQLRAHVAKLEQHIAELQAELEKKK 41
                66777778888899*************9776 PP

  == domain 2  score: 5.4 bits;  conditional E-value: 0.0054
     DUF4094  38 lklvsedcds..kdaesrskdilgev.skthkaiq....tLdktissLemeL 82 
                 l + +++ ++  ++ e+r  + l++v ++t++ +     +L ktis++em +
  KOO22001.1 166 LAILQTNSEKikERWEGRHANALRRVkEETEHKVGskvaKLRKTISAMEMAM 217
                 333333444333455555666666441345555555666***********76 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (473 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1906  (0.106308); expected 358.6 (0.02)
Passed bias filter:                      637  (0.035529); expected 358.6 (0.02)
Passed Vit filter:                        79  (0.00440627); expected 17.9 (0.001)
Passed Fwd filter:                        28  (0.00156172); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.77u 0.31s 00:00:01.08 Elapsed: 00:00:00.46
# Mc/sec: 3117.13
//
Query:       KOO22002.1  [L=532]
Description: hypothetical protein Ctob_000669 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
  ------ inclusion threshold ------
        1.1    9.4   6.8        4.1    7.5   0.2    2.7  2  BRE1           BRE1 E3 ubiquitin ligase


Domain annotation for each model (and alignments):
>> BRE1  BRE1 E3 ubiquitin ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.4   1.9    0.0045        81      21      69 ..     169     217 ..     151     240 .. 0.82
   2 ?    7.5   0.2   0.00023       4.1      36      68 ..     395     427 ..     372     430 .. 0.90

  Alignments for each domain:
  == domain 1  score: 3.4 bits;  conditional E-value: 0.0045
        BRE1  21 kkvkeltileekklrleaekakadqkyfaamrskdalenelkkLnklls 69 
                 k  +e ++ ee+k+ + ++++k      aa+++ ++ e+++   ++ ++
  KOO22002.1 169 KRSSEAAAAEERKASALKDISKRGPAEAAAKKALEQAEADIAETRAGVE 217
                 45578999******************************99987776655 PP

  == domain 2  score: 7.5 bits;  conditional E-value: 0.00023
        BRE1  36 leaekakadqkyfaamrskdalenelkkLnkll 68 
                 +  e +k d+  +a++ ++da++ e+ kL ++ 
  KOO22002.1 395 AAEEYEKRDKDLKALQAKRDAVNHEVDKLEAQS 427
                 56799************************9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (532 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1309  (0.0730102); expected 358.6 (0.02)
Passed bias filter:                      681  (0.0379832); expected 358.6 (0.02)
Passed Vit filter:                        59  (0.00329076); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.66u 0.28s 00:00:00.94 Elapsed: 00:00:00.45
# Mc/sec: 3579.55
//
Query:       KOO22003.1  [L=847]
Description: udp-glucose 6 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.3e-57  193.1   0.1    7.6e-57  191.9   0.0    1.6  2  UDPG_MGDP_dh_N  UDP-glucose/GDP-mannose dehydrogenase family,
    2.3e-34  118.0   0.1      1e-33  115.9   0.1    2.1  2  UDPG_MGDP_dh_C  UDP-glucose/GDP-mannose dehydrogenase family,
    4.1e-31  107.1   0.0      1e-30  105.8   0.0    1.7  1  UDPG_MGDP_dh    UDP-glucose/GDP-mannose dehydrogenase family,
  ------ inclusion threshold ------
      0.019   15.5   2.6      0.076   13.5   0.4    2.4  2  DUF3456         TLR4 regulator and MIR-interacting MSAP
       0.13   12.2   0.1       0.91    9.5   0.0    2.4  2  PTCB-BRCT       twin BRCT domain


Domain annotation for each model (and alignments):
>> UDPG_MGDP_dh_N  UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  191.9   0.0   2.1e-60   7.6e-57       2     181 ..      17     203 ..      16     210 .. 0.92
   2 ?   -3.1   0.0       1.4     5e+03     110     136 ..     563     591 ..     553     597 .. 0.70

  Alignments for each domain:
  == domain 1  score: 191.9 bits;  conditional E-value: 2.1e-60
                     EEEEE--STTHHHHHHHHHHCT..SEEEEE-S-HHHHHHHCTTS-SS--TTHHHHHHHHCHTTTEEEES-HHHHHHC-SEEEE-----B-T.... CS
  UDPG_MGDP_dh_N   2 kisviGlGYvGlvtaavlaeig..hevigvDideekvdklnsgkipiyepgLeelvkkavesgrlsfttdvekaveeadvifiaVgTPskk.... 90 
                     ki+++G+GYvG++t+av+a+++  ++v++ D +e++++++ns+++piyepgL+e+v++a+  ++l+f+td++ a++e+ +if++V TP+k+    
      KOO22003.1  17 KICCLGAGYVGGPTMAVMAKMCpdIKVTVTDLNERRIAAWNSSNLPIYEPGLQEVVEEAR-GRNLFFSTDIDAAIQECTIIFVSVATPTKTsgig 110
                     8*********************999***********************************.8*****************************9999 PP

                     TTTCB-THHHHHHHHHHHHHHHC.....EEEEEE-S---TTHHHHCHHHHHHHHCSS-TTCEEEEE------TTSHHHHHHS-S-EEEEESSCHH CS
  UDPG_MGDP_dh_N  91 kgkaaDlkyvesaarsiaealkk.....gkvvvvkSTvpvgtaeelvkkileeaskkkgvdfdvvsnPEflregsavkdllnpdrvviGveekka 180
                     +g+aaDl+y+e aar+ia + +       k++v+kSTvpv+ta+ ++  +++   k  g+df+v+snPEfl+eg+a+ dl++pdrv++G+  +++
      KOO22003.1 111 AGEAADLTYWELAARRIAAVCNAnpdksPKIIVEKSTVPVKTADAMA-AVMAASCK--GTDFQVLSNPEFLAEGTAIDDLFKPDRVLVGGPVTPQ 202
                     99******************988777789**************9555.44443333..58*****************************866655 PP

                     H CS
  UDPG_MGDP_dh_N 181 e 181
                     +
      KOO22003.1 203 G 203
                     5 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 1.4
                     HHHC..EEEEEE-S---TTHHHHCHHHHH CS
  UDPG_MGDP_dh_N 110 alkk..gkvvvvkSTvpvgtaeelvkkil 136
                      l++   ++vv+ S v  +++ +++++ +
      KOO22003.1 563 QLERacSQMVVETSPVLKRSCTHIIEEHS 591
                     45554568899999999999987666554 PP

>> UDPG_MGDP_dh_C  UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.0       1.2   4.2e+03      34      75 ..      62     101 ..      51     104 .. 0.79
   2 !  115.9   0.1   2.9e-37     1e-33       1     104 [.     347     454 ..     347     455 .. 0.97

  Alignments for each domain:
  == domain 1  score: -1.8 bits;  conditional E-value: 1.2
                     EEE-SSTHHCCCCHHGGBTCCEEES-CHHHHTT-SEEEE-S- CS
  UDPG_MGDP_dh_C  34 kiyDPkvkeeaveaeleekgvevvdsleealkgadaivilte 75 
                      iy+P  +e  +ea +  +++ + ++++ a++++ +i + ++
      KOO22003.1  62 PIYEPGLQEVVEEARG--RNLFFSTDIDAAIQECTIIFVSVA 101
                     5788888776666654..69999999********99988765 PP

  == domain 2  score: 115.9 bits;  conditional E-value: 2.9e-37
                     EEE-SSSSTT-S--TT-HHHHHHHHHHHCTSEEEEE-SSTHHCCCCHHGG...BTCCEEES-CHHHHTT-SEEEE-S--GGGGGS-HHHHHHCC. CS
  UDPG_MGDP_dh_C   1 ailGlafKkdtdDlReSpaldiieeLleegaevkiyDPkvkeeaveaele...ekgvevvdsleealkgadaiviltehdefkeldlaklkelm. 91 
                     ailG+afKkdt+D+Re+pa+d++++L +e+a++ iyDPkv +e++  +l     +++e+ ++++ a++ga+ai+ilte+defk ld++++++ m 
      KOO22003.1 347 AILGFAFKKDTGDTRETPAIDVCKMLFAEKANLAIYDPKVAREQIYSDLGkevIDKIEIETDPYIACSGAHAICILTEWDEFKALDYKRIYKSMq 441
                     8********************************************99887999889*************************************** PP

                     SS-EEEESSS-CC CS
  UDPG_MGDP_dh_C  92 kpavvfDgrnvld 104
                     kpa++fDgrn++d
      KOO22003.1 442 KPAFIFDGRNIID 454
                     ***********98 PP

>> UDPG_MGDP_dh  UDP-glucose/GDP-mannose dehydrogenase family, central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  105.8   0.0   2.8e-34     1e-30       1      93 [.     229     323 ..     229     324 .. 0.98

  Alignments for each domain:
  == domain 1  score: 105.8 bits;  conditional E-value: 2.8e-34
  UDPG_MGDP_dh   1 etAEliKlaaNaflatkIsfiNelanlcealgidveeVieavgldprigpkflkpglGvGGsclpkDvkaLvalaeelgle..aelleavrevNe 93 
                   ++AEl+Kl+aNafla++Is iN++++lcea+g+ v+eV +a+g d+rigpkflk+++G+GGsc++kD+ +Lv+l+++ gl+  ae++++v+++N+
    KOO22003.1 229 WSAELTKLTANAFLAQRISSINSISALCEATGASVSEVSHAIGVDTRIGPKFLKASVGFGGSCFQKDILNLVYLCRQFGLPevAEYWHQVIAMND 323
                   69*******************************************************************************99***********7 PP

>> DUF3456  TLR4 regulator and MIR-interacting MSAP
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.1   1.6     0.069   2.5e+02       1      63 [.     512     571 ..     512     576 .. 0.77
   2 ?   13.5   0.4   2.1e-05     0.076      84     156 .]     551     623 ..     530     623 .. 0.67

  Alignments for each domain:
  == domain 1  score: 2.1 bits;  conditional E-value: 0.069
     DUF3456   1 kCeaCkalveeleealseedpkkevdvgsfrldskgkkkkkkipyakSElrltevleevCekm 63 
                 +C aC  +v+el e+l  e +k + +v +  + +k +++++  ++ + +    + le  C++m
  KOO22003.1 512 YCRACLHVVNELSESLLPELEKLTAKVED--V-PKSQRYRRAAHFGNVDEKAEQQLERACSQM 571
                 6999******9999999888877766666..4.677777777777777777777777777776 PP

  == domain 2  score: 13.5 bits;  conditional E-value: 2.1e-05
     DUF3456  84 edlkelkelkdkevkvdlgipselkdep..aevkelkkaCeelveeyEdeleelfke....ee.eedleekLCeerskeC 156
                  ++ +++e+++++++       ++  +   +    lk  C++++ee+ + l+ ++ +     + +++l   LC + + +C
  KOO22003.1 551 AHFGNVDEKAEQQLE-------RACSQMvvETSPVLKRSCTHIIEEHSETLVAAIAKwhkaRRpASELRAALCARGARAC 623
                 366666666666666.......22223333455579***********99988777766555677999******9888887 PP

>> PTCB-BRCT  twin BRCT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.0      0.65   2.3e+03      15      29 ..     251     265 ..     247     267 .. 0.85
   2 ?    9.5   0.0   0.00025      0.91       7      46 ..     555     594 ..     551     606 .. 0.83

  Alignments for each domain:
  == domain 1  score: -1.4 bits;  conditional E-value: 0.65
                 HHHHHHHHTT-EEES CS
   PTCB-BRCT  15 slqklieamGaeysk 29 
                 s+  l+ea+Ga++s+
  KOO22003.1 251 SISALCEATGASVSE 265
                 68899*******986 PP

  == domain 2  score: 9.5 bits;  conditional E-value: 0.00025
                 CB-TTCHHHHHHHHHHTT-EEESSEETT-SEEEECSS-CH CS
   PTCB-BRCT   7 gysgddrkslqklieamGaeyskdltksvTHLicksgeGe 46 
                 ++++++ ++l++ +++m  e s  l++s+TH i +++e  
  KOO22003.1 555 NVDEKAEQQLERACSQMVVETSPVLKRSCTHIIEEHSETL 594
                 67788899*************************9988864 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (847 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       703  (0.0392102); expected 358.6 (0.02)
Passed bias filter:                      641  (0.0357521); expected 358.6 (0.02)
Passed Vit filter:                        56  (0.00312343); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.70u 0.28s 00:00:00.98 Elapsed: 00:00:00.43
# Mc/sec: 5970.23
//
Query:       KOO22004.1  [L=407]
Description: mateRNAl embryonic leucine zipper kinase-like protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    8.6e-47  159.7   0.0      1e-46  159.5   0.0    1.1  1  Pkinase      Protein kinase domain
    2.5e-24   86.0   0.0    3.2e-24   85.6   0.0    1.1  1  Pkinase_Tyr  Protein tyrosine kinase
  ------ inclusion threshold ------
      0.041   13.2   0.0        1.5    8.1   0.0    2.2  2  Kinase-like  Kinase-like
      0.098   12.0   0.0       0.19   11.1   0.0    1.4  1  Kdo          Lipopolysaccharide kinase (Kdo/WaaP) family
       0.16   11.5   0.0       0.27   10.8   0.0    1.3  1  FTA2         Kinetochore Sim4 complex subunit FTA2


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  159.5   0.0   2.9e-50     1e-46       5     263 ..       4     276 ..       1     277 [. 0.86

  Alignments for each domain:
  == domain 1  score: 159.5 bits;  conditional E-value: 2.9e-50
                 EEEEEESSEEEEEEEETTTTEEEEEEEEECHCHCHHHHHHHHHHHHHHHHHS.CTTB--EEEEEEE..SSEEEEEEE--TTEBHHHHHHHHSS--HHHH CS
     Pkinase   5 eklGeGsfGkVykaveketgkivAvKkikkekakkkkekkvlrEikilkklk.hpnivrlyevfee..kdelylvleyveggeladllerkgslseeea 100
                 + lGeG++G+V+ a+++e+g++vAvK++ +++ +      v+rEi+ ++    h++++ l  +f     ++++lvl++++ggel  l+ r g+l+e + 
  KOO22004.1   4 TLLGEGGYGRVVLARHAESGEHVAVKMMHTNSPNA-----VMREIHAMRVAGtHEHVCGLRAYFAGsdGRTFHLVLDLCSGGELYALVDRYGALAEGDS 97 
                 689*************************9987665.....889********99*******9999873367888************************** PP

                 HHHHHHHHHHHHHHHHTTEE-SS-SGGGEEEE..TTTEEEE-SGTTSEESSSSCS........BCTTTSCGGGS-HHHHTTSCB.SHHHHHHHHHHHHH CS
     Pkinase 101 kkiakqilegleylHskgiiHrDlKpeNiLid..ekgelKitDFGlakelesssk........ltsfvgtseYlAPEvlkeney.skkvDvWslGvily 188
                  ++++ +l+g+++lHs gi HrDlK eN+L+   e+   Ki+DFGla  ++++ +        lt+ +g++ Y++PE++ + +y +  +D+Wsl+v l+
  KOO22004.1  98 WRYFRGMLAGVRHLHSVGIAHRDLKLENVLLGgpEQLTPKICDFGLAHIYQRTADglsfenvsLTQWCGSRSYCPPEIMARMPYeGFRADLWSLAVALF 196
                 ********************************544555**************999************************999999************** PP

                 HHHHSS-STTTSSHHHHHHHHHHTHHHHHHHCT.....SHH...HHHTTS...........-HHHHHHHHHHT-SSGCCSTTHHHHHTSGG CS
     Pkinase 189 elltgkppfsgekgkekvekeldqlekilkilg.....etkeklpeasei...........seeakdllkkllkkdpkkRltaeellqhpy 263
                  +++g  p ++ ++++     + +  ++l++ g         +++    +           s+ + +ll+ +l  +p +R+  +++  + +
  KOO22004.1 197 AMVSGFFPVEEATQRD---WRFSR-LAVLQLRGgptgeS---TTA----CiygfysrpcplSPALVELLDAMLMLQPGRRMPLDDVATSAW 276
                 **********444444...33333.23344444542221...222....133446677888********************9999988888 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   85.6   0.0     9e-28   3.2e-24       5     212 ..       4     211 ..       1     222 [. 0.85

  Alignments for each domain:
  == domain 1  score: 85.6 bits;  conditional E-value: 9e-28
                  EEEEEESSEEEEEEEEETTTTSSEEEEEEEEESTTSSHHHHHHHHHHHHHHHTS.-BTTB--EEEEEE..SSSSEEEEEE--TTEBHHHHHHHTCTTT CS
  Pkinase_Tyr   5 kklGeGafGkVvegtlkgekekkevkVavKtlkeeateeekeelleeakimkkl.khpnivkllgvct..keepllivteyvkgGdLlkfLrkkekek 99 
                  + lGeG +G+Vv ++      ++ ++VavK+++ ++     +++++e++ m+    h+++  l +     ++++  +v+++++gG+L   + +    +
   KOO22004.1   4 TLLGEGGYGRVVLARHA----ESGEHVAVKMMHTNS----PNAVMREIHAMRVAgTHEHVCGLRAYFAgsDGRTFHLVLDLCSGGELYALVDRY--GA 91 
                  579***********999....8899*******4333....468******************99999987677889*************999997..9* PP

                  SBHHHHHHHHHHHHHHHHHHHHTTEEEST-SGGGEEEE..ETTEEEE-STTTHEETTTSSEE.....EETTSSTSGGGGS-HHHHHHSEEE.HHHHHH CS
  Pkinase_Tyr 100 ltlkdllsfalqvAkGmeyLeskklvHrdlaarNvLls..enkvvkisDfGLardiekddey.....vkkeeaklpvkWmapEslkekkft.sksDvW 189
                  l   d  ++   + +G+++L+s  + Hrdl   NvLl   e+ + ki+DfGLa+  +++ +      v+ ++   +  +++pE++ ++ ++  ++D W
   KOO22004.1  92 LAEGDSWRYFRGMLAGVRHLHSVGIAHRDLKLENVLLGgpEQLTPKICDFGLAHIYQRTADGlsfenVSLTQWCGSRSYCPPEIMARMPYEgFRADLW 189
                  *************************************93347789********988666555233223333334456788*********97479**** PP

                  HHHHHHHHHHTTSSGTTTTSHHH CS
  Pkinase_Tyr 190 sfGvllwEiftlgespypglkne 212
                  s +v l+ +++ g  p+++ +++
   KOO22004.1 190 SLAVALFAMVS-GFFPVEEATQR 211
                  *********99.99998887665 PP

>> Kinase-like  Kinase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.0   0.0     0.015        54      18      60 ..       4      47 ..       1      51 [. 0.86
   2 ?    8.1   0.0   0.00042       1.5     158     265 ..     109     217 ..     105     260 .. 0.78

  Alignments for each domain:
  == domain 1  score: 3.0 bits;  conditional E-value: 0.015
  Kinase-like 18 ellkkgdrsvvfevkdqetgeplavkvfllps.easkkdlerlk 60
                 +ll++g+ + v++++  e ge +avk   ++s +a  +++  ++
   KOO22004.1  4 TLLGEGGYGRVVLARHAESGEHVAVKMMHTNSpNAVMREIHAMR 47
                 78999999********************9999777777777776 PP

  == domain 2  score: 8.1 bits;  conditional E-value: 0.00042
  Kinase-like 158 anLqakglvhgkftvdnllld..ekgglmlggft..aLvragtkvvl.seve.......kgfaPpEllgsrggytrknktkmthkldaWqlGlviyri 243
                   +L++ g+ h +++ +n+ll   e+   ++ +f+  ++++  + +    +v        +++ PpE++++ + y+        +  d W l ++ + +
   KOO22004.1 109 RHLHSVGIAHRDLKLENVLLGgpEQLTPKICDFGlaHIYQRTADGLSfENVSltqwcgsRSYCPPEIMAR-MPYEG-------FRADLWSLAVALFAM 198
                  688888999999999999886223344456666422777766666532333366688999********98.66665.......99************* PP

  Kinase-like 244 wclklPltlateeakeewkfkl 265
                   +   P+++at   + +w f++
   KOO22004.1 199 VSGFFPVEEAT---QRDWRFSR 217
                  ******98776...46777665 PP

>> Kdo  Lipopolysaccharide kinase (Kdo/WaaP) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   5.3e-05      0.19     131     164 ..     108     139 ..      99     152 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 5.3e-05
         Kdo 131 iaklhragvnHadlyaknillqqeeeeeaeiwli 164
                 ++ lh++g+ H+dl   n+ll   e  +++  + 
  KOO22004.1 108 VRHLHSVGIAHRDLKLENVLLGGPE--QLTPKIC 139
                 899*****************98776..5555555 PP

>> FTA2  Kinetochore Sim4 complex subunit FTA2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   7.6e-05      0.27     175     206 ..      98     129 ..      82     145 .. 0.79

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 7.6e-05
        FTA2 175 vsqlpkllrdlkklhklgIvvrDlkeenyidg 206
                  ++++ +l  ++ lh+ gI +rDlk en++ g
  KOO22004.1  98 WRYFRGMLAGVRHLHSVGIAHRDLKLENVLLG 129
                 57899**********************98754 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (407 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       342  (0.0190752); expected 358.6 (0.02)
Passed bias filter:                      298  (0.0166211); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.49u 0.26s 00:00:00.75 Elapsed: 00:00:00.42
# Mc/sec: 2899.40
//
Query:       KOO22005.1  [L=256]
Description: hypothetical protein Ctob_000685 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.013   15.7   0.6      0.083   13.1   0.6    2.2  1  LIM       LIM domain


Domain annotation for each model (and alignments):
>> LIM  LIM domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.6   4.6e-06     0.083      16      54 ..     187     223 ..     158     227 .. 0.73

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 4.6e-06
                 EETTEEEETTTSB-TTT-SB-CTT.CEEETTEEEEHHHH CS
         LIM  16 kaldkvwHeeCFtCsdCqkeLkegsfyekdgklyCkkdy 54 
                 +  + v+H +C  C++C+ +L+ +  +   g +yC ++ 
  KOO22005.1 187 RWAGVVFHAQCGGCFKCGSKLSLE--VDAIGGIYCAAHM 223
                 567889***************988..3444569998875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (256 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       584  (0.0325729); expected 358.6 (0.02)
Passed bias filter:                      406  (0.0226449); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.21s 00:00:00.66 Elapsed: 00:00:00.40
# Mc/sec: 1938.57
//
Query:       KOO22006.1  [L=167]
Description: hypothetical protein Ctob_000686 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.9e-08   32.7   3.6     0.0018   17.7   0.2    2.5  2  EF-hand_1  EF hand
    4.1e-08   32.4   3.7    0.00027   20.3   0.7    2.7  2  EF-hand_5  EF hand
    1.1e-06   28.0   1.3      0.036   14.0   0.3    2.5  2  EF-hand_6  EF-hand domain
    8.2e-05   23.0   1.1       0.43   11.1   0.0    2.4  2  EF-hand_7  EF-hand domain pair
  ------ inclusion threshold ------
      0.078   12.8   1.6        5.9    6.8   0.2    2.4  2  EF-hand_8  EF-hand domain pair


Domain annotation for each model (and alignments):
>> EF-hand_1  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.7   0.2     5e-07    0.0018       5      24 ..      61      80 ..      58      82 .. 0.89
   2 !   15.4   0.4   2.7e-06    0.0097       6      21 ..      90     105 ..      89     105 .. 0.95

  Alignments for each domain:
  == domain 1  score: 17.7 bits;  conditional E-value: 5e-07
                HHHHHTTTSSSEEEHHHHHH CS
   EF-hand_1  5 iFrefDkDgdGkIdfeEfke 24
                iF ++Dk++d kI++eEf +
  KOO22006.1 61 IFPIMDKNKDQKISKEEFDA 80
                7889**************66 PP

  == domain 2  score: 15.4 bits;  conditional E-value: 2.7e-06
                 HHHHTTTSSSEEEHHH CS
   EF-hand_1   6 FrefDkDgdGkIdfeE 21 
                 F+ +DkDgdG+++++E
  KOO22006.1  90 FAQMDKDGDGFVSRKE 105
                 899**********998 PP

>> EF-hand_5  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.0   0.1   3.1e-05      0.11       8      23 ..      65      80 ..      61      81 .. 0.87
   2 !   20.3   0.7   7.4e-08   0.00027       3      20 ..      89     105 ..      88     105 .. 0.95

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 3.1e-05
                H-SS-SSCE-HHHHHH CS
   EF-hand_5  8 iDlNgDGkIskeELkt 23
                +D+N+D kIskeE+ +
  KOO22006.1 65 MDKNKDQKISKEEFDA 80
                8*************65 PP

  == domain 2  score: 20.3 bits;  conditional E-value: 7.4e-08
                 HHHHHH-SS-SSCE-HHH CS
   EF-hand_5   3 dtFqaiDlNgDGkIskeE 20 
                 d F ++D++gDG++s+ E
  KOO22006.1  89 D-FAQMDKDGDGFVSRKE 105
                 6.9*************98 PP

>> EF-hand_6  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.4   0.0   3.3e-05      0.12       8      24 ..      64      80 ..      60      81 .. 0.89
   2 !   14.0   0.3     1e-05     0.036       6      21 ..      90     105 ..      89     105 .. 0.95

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 3.3e-05
   EF-hand_6  8 lfDkdgdGkidaeElrk 24
                ++Dk++d ki++eE+ +
  KOO22006.1 64 IMDKNKDQKISKEEFDA 80
                68*************76 PP

  == domain 2  score: 14.0 bits;  conditional E-value: 1e-05
   EF-hand_6   6 FklfDkdgdGkidaeE 21 
                 F ++DkdgdG+++++E
  KOO22006.1  90 FAQMDKDGDGFVSRKE 105
                 99***********998 PP

>> EF-hand_7  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.1   0.0   0.00012      0.43      50      66 ..      62      78 ..      58      82 .. 0.74
   2 !   10.4   0.3    0.0002      0.71       8      24 ..      90     106 ..      86     146 .. 0.67

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00012
   EF-hand_7 50 fkefDtdkdGvisfdEF 66
                f  +D++kd +is +EF
  KOO22006.1 62 FPIMDKNKDQKISKEEF 78
                55678888888888888 PP

  == domain 2  score: 10.4 bits;  conditional E-value: 0.0002
   EF-hand_7   8 FkelDtdgdgyldkeel 24 
                 F ++D+dgdg++++ e 
  KOO22006.1  90 FAQMDKDGDGFVSRKES 106
                 88889999999988884 PP

>> EF-hand_8  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.8   0.2    0.0016       5.9      30      48 ..      60      78 ..      44      81 .. 0.84
   2 ?    5.2   0.1    0.0054        19      33      47 ..      91     105 ..      90     115 .. 0.87

  Alignments for each domain:
  == domain 1  score: 6.8 bits;  conditional E-value: 0.0016
   EF-hand_8 30 ilfrefDtdgdGkisfeEF 48
                ++f  +D ++d kis+eEF
  KOO22006.1 60 MIFPIMDKNKDQKISKEEF 78
                678899************9 PP

  == domain 2  score: 5.2 bits;  conditional E-value: 0.0054
   EF-hand_8  33 refDtdgdGkisfeE 47 
                   +D dgdG +s +E
  KOO22006.1  91 AQMDKDGDGFVSRKE 105
                 579*********988 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (167 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       615  (0.034302); expected 358.6 (0.02)
Passed bias filter:                      462  (0.0257683); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.41u 0.22s 00:00:00.63 Elapsed: 00:00:00.38
# Mc/sec: 1305.25
//
Query:       KOO22007.1  [L=316]
Description: hypothetical protein Ctob_000680 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (316 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       569  (0.0317363); expected 358.6 (0.02)
Passed bias filter:                      388  (0.0216409); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.43u 0.24s 00:00:00.67 Elapsed: 00:00:00.39
# Mc/sec: 2461.11
//
Query:       KOO22008.1  [L=408]
Description: hypothetical protein Ctob_000681 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.2e-89  300.2   0.0      3e-89  299.8   0.0    1.1  1  DUF711    Uncharacterised ACR (DUF711)


Domain annotation for each model (and alignments):
>> DUF711  Uncharacterised ACR (DUF711)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  299.8   0.0   1.7e-93     3e-89       6     405 ..      24     394 ..      20     395 .. 0.94

  Alignments for each domain:
  == domain 1  score: 299.8 bits;  conditional E-value: 1.7e-93
      DUF711   6 kldiRtvTlgislldcasedleklaekiyekiikkaaklvktveeieeeyGievvtkRisvtpisellaeasaeeavelaktldelakevgvdfiggfs 104
                  +++RtvT++++l+  +  dl+          i ka ++  ++ e+++++G+ev+t+R+++++++++++ +   +a++  +++d+ +k++ +      +
  KOO22008.1  24 LIKVRTVTTFVTLSRGTPLDLS---------PIVKAVSFNAAATERLTAEGFEVQTTRVATNSFEDYIDVSDSAAALQSFRAIDDECKRLSIR----LF 109
                 589***********88888877.........8999***********************************998888*****************....44 PP

      DUF711 105 al..vekgltkgdkeliesipealaetervcssvnvastkaginmdavraaaevikeiaeltkdkdglgnaklvvfanvpednPFfpgAfhgvgeaeav 201
                 ++  +++       e i+++p++++   r+++s  +    ++++ +a++ +a+++ +ia++t+   g+gn++++v +nv +++PFfp++++g   ++++
  KOO22008.1 110 NVgpAST------AEGIALVPDIIKLGPRLSASGVI---PDALDAQAATWLADTVLRIAAETEG--GEGNFQFCVSCNVGPGTPFFPASYSG--GGPIS 195
                 4422222......356*****************888...789********************99..*************************8..79*** PP

      DUF711 202 invGvsgpgvvkkaleeakkeasleelaeaikktafkitrlgelvarevakrlgvefggiDlSlaPtpavgdSvaeileelglesfGapGtlaalallt 300
                 + +G +++ ++++al +a    +l++  e +++t     r  e +are+a+++++ f+g+D+S+aP       +a+++ +lgl++fG++Gtla++al+t
  KOO22008.1 196 FGIGCETSAILADALPRAAG--DLRKARELVRATFEAQMRPLEDLARELASSHDLLFAGLDASVAPL-GSAPPLADAFASLGLGEFGESGTLAVSALVT 291
                 ******************66..899988888888888889999999999999**************9.56789************************** PP

      DUF711 301 davkkGGvmasskvgGlsGlflpvsEDaglaeaaeegaltiekLlamsaVCsvGLDmvpipgdtsaetiaaliaDeaalavrlnKtlavRliPvpgkka 399
                  avk+  + +s +++G+sGl+lp +EDagla++a+++ ++i++Ll++saVC++GLD+vp+pgd++ +++aal +D+aala rl+K+l++Rl+Pvpgk+a
  KOO22008.1 292 GAVKS--LSSSLTLCGYSGLMLPPCEDAGLARRASARGYSIHDLLMYSAVCGIGLDTVPVPGDVPPAKLAALFLDVAALAYRLDKPLSARLFPVPGKSA 388
                 *****..99999*************************************************************************************** PP

      DUF711 400 GdkveF 405
                 G++++F
  KOO22008.1 389 GEQTTF 394
                 ****99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (408 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       372  (0.0207485); expected 358.6 (0.02)
Passed bias filter:                      340  (0.0189637); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.25s 00:00:00.72 Elapsed: 00:00:00.41
# Mc/sec: 3007.13
//
Query:       KOO22009.1  [L=265]
Description: hypothetical protein Ctob_000682 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (265 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       334  (0.018629); expected 358.6 (0.02)
Passed bias filter:                      264  (0.0147247); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.40u 0.23s 00:00:00.63 Elapsed: 00:00:00.38
# Mc/sec: 2085.79
//
Query:       KOO22010.1  [L=300]
Description: hypothetical protein Ctob_000683 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    4.3e-08   33.9   0.0    1.1e-07   32.6   0.0    1.8  1  TFIIF_beta_N  TFIIF, beta subunit N-terminus
    4.6e-05   23.5   0.0    9.2e-05   22.5   0.0    1.5  1  TFIIF_beta    TFIIF, beta subunit HTH domain


Domain annotation for each model (and alignments):
>> TFIIF_beta_N  TFIIF, beta subunit N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.6   0.0   1.2e-11   1.1e-07       1     134 [.      31     156 ..      31     249 .. 0.78

  Alignments for each domain:
  == domain 1  score: 32.6 bits;  conditional E-value: 1.2e-11
  TFIIF_beta_N   1 erkvWLvKvPkfLaekWekeeddeegielGklrikkd....tskenkkqrvklklnedlsesekiPkeYelevtnervqntyVFsEkdlkgakaasa 93 
                   ++++W  KvPkfL + ++   +   g+ lG++  + +    +s+++ ++  +l+l+  +   e iP++Ye++    +   ty+Fs   ++  k++s+
    KOO22010.1  31 NEQLWVLKVPKFLNNYFS-V-QHAAGRPLGTIAPSSSsagtSSSSSASTAYTLTLD-GATLPEGIPCDYEVNF-GLAPPATYIFSHSAAEPPKRSSS 123
                   5799**************.4.4448********99999996556666679******.999*************.9999************9997766 PP

  TFIIF_beta_N  94 essareeaak.........eeakkapekrktipkktaLvGrvvheaevrP 134
                   +++ ++ a++         +                 L+Grvv + e+rP
    KOO22010.1 124 STAPAASASAcpggaaagaR-----------------LEGRVVAKGEIRP 156
                   65553322224444444440.................5555555555544 PP

>> TFIIF_beta  TFIIF, beta subunit HTH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.5   0.0     1e-08   9.2e-05       4      64 ..     228     288 ..     223     289 .. 0.89

  Alignments for each domain:
  == domain 1  score: 22.5 bits;  conditional E-value: 1e-08
  TFIIF_beta   4 prqelldalfelFeeyqYWslkdLkaetrqPeayLkevLeeIAv.lhrsGpfknkweLkpey 64 
                  r+el++++ +lF++  YW+  dL  ++   +  Lk +L+e+ v + ++G+  + +eLkpe 
  KOO22010.1 228 SRTELREKVLDLFGQKAYWAKIDLEYAIGT-KDGLKVCLDEVCVkVTKRGENYGDYELKPEL 288
                 689*********************999875.556********9736899***********95 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (300 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       801  (0.0446762); expected 358.6 (0.02)
Passed bias filter:                      420  (0.0234257); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.43u 0.24s 00:00:00.67 Elapsed: 00:00:00.38
# Mc/sec: 2382.53
//
Query:       KOO22011.1  [L=225]
Description: hypothetical protein Ctob_000679 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    0.00037   20.4   6.0    0.00054   19.8   6.0    1.3  1  FAM184    Family with sequence similarity 184, A and B


Domain annotation for each model (and alignments):
>> FAM184  Family with sequence similarity 184, A and B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.8   6.0     3e-08   0.00054      53     159 ..      81     185 ..      69     224 .. 0.79

  Alignments for each domain:
  == domain 1  score: 19.8 bits;  conditional E-value: 3e-08
      FAM184  53 qkiaeleesleqhekekrqalaefeqykrrveerelkleaehsqkvvelsreveevkrkFeeklrqfaqlqeqleqekekaLeelrkkhreeveeLlke 151
                 + +a+l ++l+q e ++r+alae+ +  + +  re+++ aeh +    l+ ++    +kFee+l++f  +++ l  e ++  +++ +  +ee+ +L +e
  KOO22011.1  81 TCRATLTSELRQAEGDRREALAEA-MALKAARMREIETAAEHLAYSKRLEDQIVLNDAKFEEALSAFVTVKSSLGLENAQLRDDVIRG-SEELHSLAEE 177
                 56789*******************.555678899*****************************************9999887777776.7777777777 PP

      FAM184 152 qeaqsekl 159
                 ++  +  +
  KOO22011.1 178 HDVLNDAC 185
                 76554433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (225 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       735  (0.040995); expected 358.6 (0.02)
Passed bias filter:                      384  (0.0214178); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.26s 00:00:00.68 Elapsed: 00:00:00.42
# Mc/sec: 1617.49
//
Query:       KOO22012.1  [L=341]
Description: serine threonine-protein kinase nek2-like protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    7.5e-52  176.3   0.0    8.5e-52  176.1   0.0    1.0  1  Pkinase         Protein kinase domain
    3.3e-34  118.3   0.0    4.2e-34  118.0   0.0    1.1  1  Pkinase_Tyr     Protein tyrosine kinase
    0.00021   20.2   0.0    0.00036   19.4   0.0    1.3  1  Pkinase_fungal  Fungal protein kinase
    0.00034   20.0   0.0    0.00048   19.5   0.0    1.3  1  Kinase-like     Kinase-like
  ------ inclusion threshold ------
      0.018   15.0   0.5      0.018   15.0   0.5    2.6  3  APH             Phosphotransferase enzyme family
      0.083   12.2   0.2       0.15   11.4   0.2    1.3  1  Kdo             Lipopolysaccharide kinase (Kdo/WaaP) family


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  176.1   0.0   2.8e-55   8.5e-52      19     263 ..      41     279 ..      21     280 .. 0.88

  Alignments for each domain:
  == domain 1  score: 176.1 bits;  conditional E-value: 2.8e-55
                 EETTTTEEEEEEEEECHCHCHHHHHHHHHHHHHHHHHSCTTB--EEEEEEE.SSEEEEEEE--TTEBHHHHHH....HHSS--HHHHHHHHHHHHHHHH CS
     Pkinase  19 veketgkivAvKkikkekakkkkekkvlrEikilkklkhpnivrlyevfee.kdelylvleyveggeladlle....rkgslseeeakkiakqilegle 112
                 v+ ++++ +++K++  +++ +    +  +E+ +l + khp+i+ ++e+++  + +l +v+ey+ +g+l++ll     r  +++e+++  +++q++ +l+
  KOO22012.1  41 VSGDSSRLYVLKELHLDRELDAAALDEPQEVLLLTSQKHPFIIPVVEMLRPsPGQLGMVTEYCGQGDLHSLLIelrrRGEHVPEAQVLAWLAQLCLALS 139
                 44678999*************9999999*********************98578899**********99998878855566****************** PP

                 HHHHTTEE-SS-SGGGEEEETTTEEEE-SGTTSEESSSSCSBCTTTSCGGGS-HHHHTTSCBSHHHHHHHHHHHHHHHHHSS-STTTSSHHHHHHHHHH CS
     Pkinase 113 ylHskgiiHrDlKpeNiLidekgelKitDFGlakelessskltsfvgtseYlAPEvlkeneyskkvDvWslGvilyelltgkppfsgekgkekvekeld 211
                 +lH+++i+HrD+K++Ni++  ++ lK++DFGla+   +++  ts+vg++ Y++PE+  +++y++++D+WslG++lye+++  p f++e+    +   l+
  KOO22012.1 140 HLHKQHILHRDVKTSNIFVTADRTLKLGDFGLARLTVEQEAITSRVGSPFYMSPEICLHQPYGSASDLWSLGCVLYEIICLAPAFYAES----MGLVLE 234
                 **************************************************************************************222....222222 PP

                 THHHHHHHCTSHH...HHHTTS-HHHHHHHHHHT-SSGCCSTTHHHHHTSGG CS
     Pkinase 212 qlekilkilgetkeklpeaseiseeakdllkkllkkdpkkRltaeellqhpy 263
                    +i+k     + + p +  +s+ +++ll++ll+ dpk R++a+e+l+hp 
  KOO22012.1 235 ---RICK----AQYAPPPEGACSSGVRELLSRLLTLDPKVRISAHEVLEHPA 279
                 ...3333....478999999******************************96 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  118.0   0.0   1.4e-37   4.2e-34      49     257 ..      68     276 ..      23     277 .. 0.85

  Alignments for each domain:
  == domain 1  score: 118.0 bits;  conditional E-value: 1.4e-37
                  HHHHHHHHTS-BTTB--EEEEEE.SSSSEEEEEE--TTEBHHHHH...HHTCTTTSBHHHHHHHHHHHHHHHHHHHHTTEEEST-SGGGEEEEETTEE CS
  Pkinase_Tyr  49 leeakimkklkhpnivkllgvct.keepllivteyvkgGdLlkfL...rkkekekltlkdllsfalqvAkGmeyLeskklvHrdlaarNvLlsenkvv 142
                   +e+ ++++ khp i+ ++ +   + ++l +vtey+ +GdL++ L   r++  e++   ++l + +q++ ++++L++++++Hrd+ + N++++ +++ 
   KOO22012.1  68 PQEVLLLTSQKHPFIIPVVEMLRpSPGQLGMVTEYCGQGDLHSLLielRRR-GEHVPEAQVLAWLAQLCLALSHLHKQHILHRDVKTSNIFVTADRTL 164
                  4699999999************988889************99987221454.8999****************************************** PP

                  EE-STTTHEETTTSSEEEETTSSTSGGGGS-HHHHHHSEEEHHHHHHHHHHHHHHHHTTSSGTTTTSHHHHHHHHHHTTEES-BBTTSBHHHHHHHHH CS
  Pkinase_Tyr 143 kisDfGLardiekddeyvkkeeaklpvkWmapEslkekkftsksDvWsfGvllwEiftlgespypglkneevleklkegkrlekpekcpeelyelmkk 240
                  k++DfGLar + +++  +++     +  +m+pE+  ++ + s+sD Ws G +l+Ei++l+   y++ +   + +  k+++  +    c++ + el+++
   KOO22012.1 165 KLGDFGLARLTVEQEAITSR---VGSPFYMSPEICLHQPYGSASDLWSLGCVLYEIICLAPAFYAESMGLVLERICKAQYAPPPEGACSSGVRELLSR 259
                  **********9666666555...45668********************************999999888776666688888888899*********** PP

                  HT-SSGGGS--HHHHHH CS
  Pkinase_Tyr 241 cweedpeeRptfselve 257
                   ++ dp+ R + +e++e
   KOO22012.1 260 LLTLDPKVRISAHEVLE 276
                  *********99998876 PP

>> Pkinase_fungal  Fungal protein kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.4   0.0   1.2e-07   0.00036     307     388 ..     126     198 ..     120     218 .. 0.81

  Alignments for each domain:
  == domain 1  score: 19.4 bits;  conditional E-value: 1.2e-07
  Pkinase_fungal 307 ellealrDaIkghrsLflkagiLHrDiSenNilitdskkegerkglLiDLDlakelsddssesgarertGTleFmaievlkg 388
                     ++l+ l++   ++  L+ k+ iLHrD+ + Ni +t     ++r+  L D+ la  + ++   ++   r+G + +m+ e+   
      KOO22012.1 126 QVLAWLAQLCLALSHLH-KQHILHRDVKTSNIFVT-----ADRTLKLGDFGLARLTVEQ---EAITSRVGSPFYMSPEICLH 198
                     6788888889999****.*****************.....89999********888753...333679*******9999883 PP

>> Kinase-like  Kinase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.5   0.0   1.6e-07   0.00048     141     247 ..     128     221 ..     104     268 .. 0.73

  Alignments for each domain:
  == domain 1  score: 19.5 bits;  conditional E-value: 1.6e-07
  Kinase-like 141 letiarlllTlqlirlaanLqakglvhgkftvdnllldekgglmlggftaLv.ragtkvvlseve.kgfaPpEllgsrggytrknktkmthkldaWql 236
                  l+ +a+      l     +L+++ ++h +++  n++   +  l+lg+f+  + ++ +++  s v    +  pE++ +           +  + d W l
   KOO22012.1 128 LAWLAQ------LCLALSHLHKQHILHRDVKTSNIFVTADRTLKLGDFGLARlTVEQEAITSRVGsPFYMSPEICLH---------QPYGSASDLWSL 210
                  333333......3444589*****************************854314555555599983456899*9988.........2456689***** PP

  Kinase-like 237 Glviyriwclk 247
                  G v y i cl 
   KOO22012.1 211 GCVLYEIICLA 221
                  *********96 PP

>> APH  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.1   0.0      0.25   7.5e+02      18      56 ..      43      87 ..      19     110 .. 0.51
   2 ?   15.0   0.5     6e-06     0.018     144     196 ..     111     172 ..      87     177 .. 0.74
   3 ?    0.0   0.4      0.23   6.7e+02      21      51 ..     295     325 ..     257     339 .. 0.60

  Alignments for each domain:
  == domain 1  score: -0.1 bits;  conditional E-value: 0.25
                ETT.--EEEEEE-TT.S-HHHHHHHHHHHHHHHHTT-....B--B CS
         APH 18 tpa.gryvlrrnppa.raaeeirrevallrlLakagv....pvPe 56
                +++ + yvl+  +   ++++ + +e ++  lL  ++     pv e
  KOO22012.1 43 GDSsRLYVLKELHLDrELDAAALDEPQEVLLLTSQKHpfiiPVVE 87
                222345555544444444444444443333333222223444444 PP

  == domain 2  score: 15.0 bits;  conditional E-value: 6e-06
                 HHHHHHHH........HHHHHHHH--S...SS-EEEE-SS-SGGGEEEC..TTEEEEE---TT- CS
         APH 144 lleeleeq........vlaalaallpg...elptvllHgDlhpgNllvdpddgrvtGviDfeda 196
                 ll+el+++        vla+la+l ++     ++ +lH+D ++ N+ v++d +    + Df++a
  KOO22012.1 111 LLIELRRRgehvpeaqVLAWLAQLCLAlshLHKQHILHRDVKTSNIFVTADRTLK--LGDFGLA 172
                 344455555557777799999999999998899999*************555444..5566666 PP

  == domain 3  score: 0.0 bits;  conditional E-value: 0.23
                 --EEEEEE-TTS-HHHHHHHHHHHHHHHHTT CS
         APH  21 gryvlrrnpparaaeeirrevallrlLakag 51 
                  +++ r+ ++++ a+ +r+ v+  + La+++
  KOO22012.1 295 ASFFARLEADSDDAAAMRAAVRAAAELAGND 325
                 3444455555555555555555555555444 PP

>> Kdo  Lipopolysaccharide kinase (Kdo/WaaP) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.2   4.9e-05      0.15     115     166 ..     122     169 ..     104     181 .. 0.77

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 4.9e-05
         Kdo 115 laeelkrallkavgrliaklhragvnHadlyaknillqqeeeeeaeiwliDl 166
                 ++e+   a l ++  + + lh+ ++ H+d+   ni++ ++     ++ l D+
  KOO22012.1 122 VPEAQVLAWLAQLCLALSHLHKQHILHRDVKTSNIFVTADR----TLKLGDF 169
                 55555567788999999********************9987....5555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (341 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       375  (0.0209158); expected 358.6 (0.02)
Passed bias filter:                      287  (0.0160076); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.47u 0.23s 00:00:00.70 Elapsed: 00:00:00.40
# Mc/sec: 2574.11
//
Query:       KOO22013.1  [L=718]
Description: hypothetical protein Ctob_000674 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (718 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2097  (0.116961); expected 358.6 (0.02)
Passed bias filter:                      587  (0.0327403); expected 358.6 (0.02)
Passed Vit filter:                        86  (0.0047967); expected 17.9 (0.001)
Passed Fwd filter:                        20  (0.00111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.90u 0.32s 00:00:01.22 Elapsed: 00:00:00.47
# Mc/sec: 4598.58
//
Query:       KOO22014.1  [L=676]
Description: hypothetical protein Ctob_000677 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
  ------ inclusion threshold ------
        3.3    7.1  71.3       0.03   13.8   7.3    4.1  4  Golgin_A5     Golgin subfamily A member 5


Domain annotation for each model (and alignments):
>> Golgin_A5  Golgin subfamily A member 5
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.5   9.1    0.0045        81     126     192 ..      21      90 ..      13      99 .. 0.77
   2 ?   13.8   7.3   1.7e-06      0.03      42     118 ..     112     189 ..      91     210 .. 0.77
   3 ?    5.0  10.8   0.00079        14      26     120 ..     244     338 ..     239     342 .. 0.85
   4 ?    4.8  21.5    0.0009        16      28     140 ..     335     452 ..     331     477 .. 0.75

  Alignments for each domain:
  == domain 1  score: 2.5 bits;  conditional E-value: 0.0045
   Golgin_A5 126 leeelvrskatlqsrikdrekeieklrnqlttkslsssseselesRlk...qLtesLiqKQtvlEalste 192
                 +++ ++r+k++  +  ++  +++ekl+ ql+++++    ++ l   l    qL+e +++KQ  + a + e
  KOO22014.1  21 AKNKMHREKVHADELNRRLREDVEKLTLQLAQEKQRRQADQSLHGDLEhnaQLMEEIVEKQKEVSAWHDE 90 
                 5677889999999989999999999999999988777777666666633338999999999988776666 PP

  == domain 2  score: 13.8 bits;  conditional E-value: 1.7e-06
   Golgin_A5  42 stalsaeldelkqerdllreelqklnqqieqlrtelqdleaqqqaeaeslreqlqeleeqleeerkakeev.eaeler 118
                  t++   l el+q+r  l++ ++ l+++++ql+++l++ ea++++   +lr +++  ++ql++ +++ e+v +a+le 
  KOO22014.1 112 LTREVGRLKELQQDRTRLKKLVTTLQGRVKQLKAKLAEAEAHHKQRETELRAEVAATHDQLRAASAEAERVaSAQLEA 189
                 345666899****************************************************98776655441344444 PP

  == domain 3  score: 5.0 bits;  conditional E-value: 0.00079
   Golgin_A5  26 liasLkegsgeeglesstalsaeldelkqerdllreelqklnqqieqlrtelqdleaqqqaeaeslreqlqeleeqleeerkakeeveaelerlk 120
                 l+ +Lk++++++ ++++  ++ae + l+qe+++l  el  l+q+ ++l ++ +   + + +++  l eq+q+++ +++++ +a  ++ ael  l+
  KOO22014.1 244 LVTQLKHEAAQTLADAQAHAKAEHETLRQEKEALAVELSVLQQRQNELLAQRAAAAHAHDEQSALLTEQVQSMRAEVSAKGAAIDSAAAELDALR 338
                 7899**9999999999999******************9999999999999977777777777778899999999999988888888888877665 PP

  == domain 4  score: 4.8 bits;  conditional E-value: 0.0009
   Golgin_A5  28 asLkegsgeeglessta.lsaeldelkqerdllreelqklnqqieqlrtelqdleaqqqaeaeslreqlqeleeq....leeerkakeeveaelerlke 121
                 + L+++s++++l+ s+a ++ e d+++qe++   + l+++++++e l +  ++l aq++ ea+   e+ +ele +    l+  +k+ +++++ele+++ 
  KOO22014.1 335 DALRSQSAQQTLSDSRAaTQREWDAVQQEHKSRAALLEATTTRVEALEAADAELRAQAEVEARGRAEERRELEAAhqaaLHRLEKQLRATQDELEQVNA 433
                 679999988888765543999**************************9998888888888888777777777654111144556667789999999999 PP

   Golgin_A5 122 elryleeelvrskatlqsr 140
                 + r++++el +++a +q+ 
  KOO22014.1 434 QHRATQDELEQAHAATQAA 452
                 9999999999988766643 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (676 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      3350  (0.186848); expected 358.6 (0.02)
Passed bias filter:                      660  (0.0368119); expected 358.6 (0.02)
Passed Vit filter:                       166  (0.00925874); expected 17.9 (0.001)
Passed Fwd filter:                        78  (0.00435049); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 1.99u 0.37s 00:00:02.36 Elapsed: 00:00:00.63
# Mc/sec: 3222.45
//
Query:       KOO22015.1  [L=428]
Description: hypothetical protein Ctob_000676 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.014   15.1   0.8      0.049   13.3   0.8    1.9  1  Lebercilin  Ciliary protein causing Leber congenital amaurosi
       0.12   12.5   1.4       0.25   11.5   0.2    2.2  2  bZIP_1      bZIP transcription factor


Domain annotation for each model (and alignments):
>> Lebercilin  Ciliary protein causing Leber congenital amaurosis disease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.8   5.5e-06     0.049      93     145 ..     347     399 ..     331     406 .. 0.83

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 5.5e-06
  Lebercilin  93 keaellrlkdklkklkkLsedknLaereeLqkkLeeleakleekeekikeLer 145
                    el +l+++ ++ ++ + ++ L ere+L++++++lea   +++ +i++L  
  KOO22015.1 347 HRRELDQLRSSWSTASSSAGAQILGEREQLHRRIASLEAANAQQSSEISRLTE 399
                 3568999999999999999*****************************99975 PP

>> bZIP_1  bZIP transcription factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   0.1       1.2   1.1e+04      24      47 ..     252     276 ..     250     279 .. 0.61
   2 ?   11.5   0.2   2.8e-05      0.25      28      55 ..     373     400 ..     370     405 .. 0.91

  Alignments for each domain:
  == domain 1  score: -3.4 bits;  conditional E-value: 1.2
                 HHHHHHHHHHHHH.HHHHHHHHHHH CS
      bZIP_1  24 KqaeieeLerrvk.aLekeNksLks 47 
                 + ae  +L + v+  L + N+ L++
  KOO22015.1 252 RLAEATQLRTAVDdRLRAVNSLLRQ 276
                 5677777777775246666666655 PP

  == domain 2  score: 11.5 bits;  conditional E-value: 2.8e-05
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
      bZIP_1  28 ieeLerrvkaLekeNksLkseleelkke 55 
                  e+L rr + Le+ N++ +se+++l++ 
  KOO22015.1 373 REQLHRRIASLEAANAQQSSEISRLTEL 400
                 69***********************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (428 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1167  (0.0650901); expected 358.6 (0.02)
Passed bias filter:                      730  (0.0407162); expected 358.6 (0.02)
Passed Vit filter:                        65  (0.00362541); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.57u 0.30s 00:00:00.86 Elapsed: 00:00:00.46
# Mc/sec: 2818.42
//
Query:       KOO22016.1  [L=234]
Description: fpr1p [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.8e-27   94.9   0.0    5.7e-27   93.9   0.0    1.5  2  FKBP_C    FKBP-type peptidyl-prolyl cis-trans isomerase


Domain annotation for each model (and alignments):
>> FKBP_C  FKBP-type peptidyl-prolyl cis-trans isomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.0      0.55   9.9e+03      61      77 ..      37      53 ..      28      65 .. 0.56
   2 !   93.9   0.0   3.2e-31   5.7e-27       5      94 .]      87     175 ..      83     175 .. 0.95

  Alignments for each domain:
  == domain 1  score: -3.1 bits;  conditional E-value: 0.55
                EEEEEEGGGTTTTTTBC CS
      FKBP_C 61 rtltippelaYgekgla 77
                +  +i    ++++ ++a
  KOO22016.1 37 AAAHIAQTTEFKDSKAA 53
                44444444555554443 PP

  == domain 2  score: 93.9 bits;  conditional E-value: 3.2e-31
                 B-TTCEEEEEEEEEET.TSSEEEEHCCHTSEEEEETTSSSSCHHHHHHHTTSBTT-EEEEEEEGGGTTTTTTBCTTTB.TTSEEEEEEEEE CS
      FKBP_C   5 akegdtVtvhykgkle.dgkvfdssrsrakplefkvGsgqvikGfeealegmkvGekrtltippelaYgekglaggvippnatLvFeveLl 94 
                 +  gd ++vhy g l+ dg+ fdss++r+++++fk+G g+vikG++ ++  m+vGek  l+ip+ l+Yg  g  +  +ppna+L Fev L+
  KOO22016.1  87 PSYGDMCHVHYRGLLAsDGTQFDSSYERGREFTFKIGHGKVIKGWDLGIARMSVGEKSLLMIPSALGYGPAGNGP--VPPNADLKFEVHLV 175
                 7789************9********************************************************55..***********995 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (234 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       243  (0.0135535); expected 358.6 (0.02)
Passed bias filter:                      232  (0.0129399); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.26s 00:00:00.69 Elapsed: 00:00:00.44
# Mc/sec: 1593.93
//
Query:       KOO22017.1  [L=214]
Description: prolyl 4-hydroxylase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.3e-14   54.9   0.0    2.2e-14   54.1   0.0    1.4  1  2OG-FeII_Oxy_3  2OG-Fe(II) oxygenase superfamily
     0.0012   19.3   0.0     0.0029   18.0   0.0    1.6  2  2OG-FeII_Oxy    2OG-Fe(II) oxygenase superfamily


Domain annotation for each model (and alignments):
>> 2OG-FeII_Oxy_3  2OG-Fe(II) oxygenase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.1   0.0   2.5e-18   2.2e-14       2      96 .]       5     107 ..       4     107 .. 0.91

  Alignments for each domain:
  == domain 1  score: 54.1 bits;  conditional E-value: 2.5e-18
                     EEEEE-TT-EEEEE-SS--.........--TT.-.EEEEEEEEE....ET-B--EEE..........---TT-EEEEE-..B-T.......EEE- CS
  2OG-FeII_Oxy_3   2 qvlrygegqeykpHvDnfe.........keegsgqrrltvllyLnekeseeGGelelyekdkeavkikpkkgrlvlFesdellp.......Hevl 80 
                     qv+ry ++q+y  H+D  +          ++g gqr++tvl+yLn  +  +GG+ ++   ++ + +++pkkgr+++F+ + ++        H+++
      KOO22017.1   5 QVARYTDSQRYVEHYDGVDphtdagrafCANG-GQRICTVLCYLN--DVLDGGATAF---RRVKFEVRPKKGRALIFFPGFMNGeldtdalHAGM 93 
                     89***************99********98888.9**********8..569****888...55688999***********99977*********** PP

                     -B.-SS-EEEEEEEEE CS
  2OG-FeII_Oxy_3  81 pvtkggeRlsltgwir 96 
                     p     ++++  +wir
      KOO22017.1  94 PA--VDTKWVSQVWIR 107
                     *7..44********96 PP

>> 2OG-FeII_Oxy  2OG-Fe(II) oxygenase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.0   0.0   3.3e-07    0.0029       9     100 ..       9     107 ..       2     108 .. 0.63
   2 ?   -2.2   0.0      0.67     6e+03      66      66 ..     130     130 ..     110     177 .. 0.61

  Alignments for each domain:
  == domain 1  score: 18.0 bits;  conditional E-value: 3.3e-07
                   E............E-S---------EEEEEESSSEEEEEEE-...TT---EEEETEEEE----TTEEEEEE-HHHHHHTTS....-S----EEE-.- CS
  2OG-FeII_Oxy   9 y............ypphpdpevilglgahtdaslltillqdd...vgglevfkdgkwlrvppvdnslivniGdallflsng....ryksvlHrVl.p 85 
                   y            ++ph+d     +++a+  +++ t+l   +    gg + f+      v+    ++++++G al f+++      ++++lH+++ +
    KOO22017.1   9 YtdsqryvehydgVDPHTDAG--RAFCANGGQRICTVLCYLNdvlDGGATAFRR-----VKF---EVRPKKGRALIFFPGFmngeLDTDALHAGMpA 95 
                   433333233345557777776..4566666666666644444356777777444.....443...66666666655555545556**********88 PP

                   --GTGSEEEEEEEE- CS
  2OG-FeII_Oxy  86 vnegerRvsiayfie 100
                   v++   ++ + ++i+
    KOO22017.1  96 VDT---KWVSQVWIR 107
                   888...*******97 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 0.67
                   H CS
  2OG-FeII_Oxy  66 d 66 
                   +
    KOO22017.1 130 P 130
                   2 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (214 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       205  (0.011434); expected 358.6 (0.02)
Passed bias filter:                      184  (0.0102627); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.37u 0.26s 00:00:00.63 Elapsed: 00:00:00.39
# Mc/sec: 1632.97
//
Query:       KOO22018.1  [L=382]
Description: prolyl 4-hydroxylase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    5.9e-13   49.5   0.0    1.1e-12   48.7   0.0    1.5  1  2OG-FeII_Oxy_3  2OG-Fe(II) oxygenase superfamily
    0.00043   20.7   0.0     0.0011   19.4   0.0    1.7  1  2OG-FeII_Oxy    2OG-Fe(II) oxygenase superfamily


Domain annotation for each model (and alignments):
>> 2OG-FeII_Oxy_3  2OG-Fe(II) oxygenase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.7   0.0   1.2e-16   1.1e-12       2      96 .]     180     282 ..     179     282 .. 0.89

  Alignments for each domain:
  == domain 1  score: 48.7 bits;  conditional E-value: 1.2e-16
                     EEEEE-TT-EEEEE-SS--.........--TT.-.EEEEEEEEE....ET-B--EEE..........---TT-EEEEE-..B-T.......EEE- CS
  2OG-FeII_Oxy_3   2 qvlrygegqeykpHvDnfe.........keegsgqrrltvllyLnekeseeGGelelyekdkeavkikpkkgrlvlFesdellp.......Hevl 80 
                     qv+ry  +q+y  H+D  +          + g gqr++tvl+yLn  e  eGG   +   ++ + +ikp kg++++F+ + l+        H+++
      KOO22018.1 180 QVARYASSQRYVEHYDGVDphteagrsfCAAG-GQRVATVLVYLN--EVSEGGCTHF---KRLDLSIKPDKGTALIFFPGFLNGeldtdalHAGM 268
                     89***999*********99******9987777.9**********8..4589**9777...5567899************988669********** PP

                     -B.-SS-EEEEEEEEE CS
  2OG-FeII_Oxy_3  81 pvtkggeRlsltgwir 96 
                     p     ++++  +wir
      KOO22018.1 269 PA--VDTKWVSQVWIR 282
                     *7..44********96 PP

>> 2OG-FeII_Oxy  2OG-Fe(II) oxygenase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.4   0.0   1.2e-07    0.0011       7     100 ..     182     282 ..     177     283 .. 0.64

  Alignments for each domain:
  == domain 1  score: 19.4 bits;  conditional E-value: 1.2e-07
                   EEE............E-S------.---EEEEEESSSEEEEEEE-TT---EEEETEEEE----TTEEEEEE-HHHHHHTTS....-S----EEE-.- CS
  2OG-FeII_Oxy   7 lny............ypphpdpev.ilglgahtdaslltillqddvgglevfkdgkwlrvppvdnslivniGdallflsng....ryksvlHrVl.p 85 
                   ++y            ++ph++  +   + g+++ a++l++l+  + gg         +  ++ d+s+++ +G al f+++      ++++lH+++ +
    KOO22018.1 182 ARYassqryvehydgVDPHTEAGRsFCAAGGQRVATVLVYLNEVSEGGC--------THFKRLDLSIKPDKGTALIFFPGFlngeLDTDALHAGMpA 270
                   5554444413332222333333323333555555555555555555555........5677788899999999988888778888**********88 PP

                   --GTGSEEEEEEEE- CS
  2OG-FeII_Oxy  86 vnegerRvsiayfie 100
                   v++   ++ + ++i+
    KOO22018.1 271 VDT---KWVSQVWIR 282
                   888...*******97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (382 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       347  (0.0193541); expected 358.6 (0.02)
Passed bias filter:                      314  (0.0175135); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.43u 0.23s 00:00:00.66 Elapsed: 00:00:00.37
# Mc/sec: 3064.65
//
Query:       KOO22019.1  [L=229]
Description: catechol o-methyltransferase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.6e-14   52.1   0.0    6.4e-14   51.6   0.0    1.2  1  Methyltransf_3   O-methyltransferase
    5.5e-09   37.0   0.0    8.6e-09   36.4   0.0    1.3  1  Methyltransf_24  Methyltransferase domain
     0.0016   18.2   0.0     0.0022   17.8   0.0    1.2  1  PCMT             Protein-L-isoaspartate(D-aspartate) O-methyl


Domain annotation for each model (and alignments):
>> Methyltransf_3  O-methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.6   0.0   1.1e-17   6.4e-14      48     163 ..      64     182 ..      52     200 .. 0.91

  Alignments for each domain:
  == domain 1  score: 51.6 bits;  conditional E-value: 1.1e-17
                     --EEEEE--TTSHHHHHHHTTS-TT-EEEEEES-HHHHHHHHHHHHHTT-GGGEEEEES-HHHHHHHHHTSSS.---EEEEEE-S-GGGHHHHHH CS
  Methyltransf_3  48 akrvleiGvftGyslLatalalPeDGkilaididreayeialkfiqkagvaekieliegdalkvLeelvkdkk.lpefDfifvDaDkssyvnyye 141
                      +  +eiG++ Gy+++ +   +P+ Gk++++++d+ +++ia k+i++ag+ +++ +  g  +  L  + k+ +  + +D +++D D +sy    +
      KOO22019.1  64 PRTAMEIGTYCGYTAVRMGRHVPPGGKLISVEMDPLYAAIATKIIEHAGLRDRVFVEIGTVKDRLAAIQKKYSlSGPLDAVLLDHDVNSYLPDLK 158
                     4678***************************************************************9998776899*************99888 PP

                     HHHH..TEEEEEEEEEE-TTGGGG CS
  Methyltransf_3 142 klle..LvkvGgliaiDntLWeGk 163
                     +l    L+ +G ++  D +L+ G+
      KOO22019.1 159 RLEAegLITKGTVVLCDWSLYPGS 182
                     8642349999*9999999999885 PP

>> Methyltransf_24  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.4   0.0   1.4e-12   8.6e-09       1     104 [.      68     175 ..      68     177 .. 0.88

  Alignments for each domain:
  == domain 1  score: 36.4 bits;  conditional E-value: 1.4e-12
  Methyltransf_24   1 vEiGvysGvstlwllralrrngagrlvavdhdpg.aeeaaalareaglddrvrlikadseealasla.....agsiDllfiDgghaaeavledl 88 
                      +EiG+y+G++++ ++r +   g+  l++v+ dp  a+ a+++++ agl+drv +  ++ ++ la  +     +g+ D +++D  h+ +++l+dl
       KOO22019.1  68 MEIGTYCGYTAVRMGRHVPPGGK--LISVEMDPLyAAIATKIIEHAGLRDRVFVEIGTVKDRLAAIQkkyslSGPLDAVLLD--HDVNSYLPDL 157
                      59******************995..********644446666666******************9888889999*********..99******** PP

  Methyltransf_24  89 eal..lprlapggvvlfd 104
                      + l  + ++++g+vvl+d
       KOO22019.1 158 KRLeaEGLITKGTVVLCD 175
                      7772256999*****999 PP

>> PCMT  Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.8   0.0   3.6e-07    0.0022      75     130 ..      65     121 ..      50     145 .. 0.88

  Alignments for each domain:
  == domain 1  score: 17.8 bits;  conditional E-value: 3.6e-07
                 -EEEEES-TTSHHHHHHHHHHCTTCEEEEEESBHHHHHHHHHHHHHCTTC.SEEEEE CS
        PCMT  75 arvLevGsGsGyltavlarlvgekgrvvsierikelveeakrnlkkldle.nvivvv 130
                   ++e+G+ +Gy ++ + r v + g+++s+e  +  ++ a++ +++ +l+ +v v +
  KOO22019.1  65 RTAMEIGTYCGYTAVRMGRHVPPGGKLISVEMDPLYAAIATKIIEHAGLRdRVFVEI 121
                 5789******************************999*******9999875666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (229 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       306  (0.0170673); expected 358.6 (0.02)
Passed bias filter:                      297  (0.0165653); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.41u 0.25s 00:00:00.65 Elapsed: 00:00:00.40
# Mc/sec: 1703.61
//
Query:       KOO22020.1  [L=458]
Description: ATP-dependent RNA helicase dob1 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.7e-32  112.4   0.1    3.2e-32  111.5   0.1    1.5  1  DSHCT        DSHCT (NUC185) domain
    1.5e-07   31.7   0.0    3.2e-07   30.7   0.0    1.6  1  Helicase_C   Helicase conserved C-terminal domain
  ------ inclusion threshold ------
      0.028   14.3   0.5          4    7.4   0.0    3.7  4  Homeodomain  Homeodomain


Domain annotation for each model (and alignments):
>> DSHCT  DSHCT (NUC185) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  111.5   0.1   5.3e-36   3.2e-32       2     163 ..     272     450 ..     271     451 .. 0.90

  Alignments for each domain:
  == domain 1  score: 111.5 bits;  conditional E-value: 5.3e-36
       DSHCT   2 ntvtlkGrvaaeirsedeLlltellfsgvlddlepeelaAllsalvfeekredeeeke....pkl.seeleealeelkeiaeriakvs........... 84 
                 +++ lkGr+a+ i+ +deLll e++++gvl++l+ +e +A+l++l   ++  +++  +    p l +++l++a++ +k+++er++++            
  KOO22020.1 272 DVLLLKGRAACCIEASDELLLVEVIVDGVLNELSTAETVAVLACLLPGQRVAKSSLGTsyslP-LpTAALDRAIAAIKQTNERLKRLAaefaleptvgm 369
                 7899********************************************998776654488854.559999999999999999999888999******96 PP

       DSHCT  85 .vesrldlglvevvyaWakgasfaellekt.dldeGdiVRllrrleellrqlakaakvigneeLkkkaeeaielikRdiVf 163
                   +  l  +lv++v aWa+gasf+++   + + +eG++VR l+ l+e+l qla+aa ++gn+ L++ + + +++++R+i f
  KOO22020.1 370 dERDDLSTELVAAVLAWASGASFEQCWLLSpSTYEGTLVRHLKALDEMLLQLADAASALGNQPLRERFLDGRAAVHRGIAF 450
                 533334789*****************9986699**********************************************87 PP

>> Helicase_C  Helicase conserved C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.7   0.0   5.4e-11   3.2e-07      40     111 .]      66     145 ..      32     145 .. 0.75

  Alignments for each domain:
  == domain 1  score: 30.7 bits;  conditional E-value: 5.4e-11
                 TSTEEEESTTSTHHHHHHHHHHHHTTSSSEEEESGGGTSSSTSTTESEEEESSSS....SS....HHHHHHHHTTSSSTT CS
  Helicase_C  40 gikvavlhgelpqnereeileqfnkgesdvLiatdvaerGidipkvnlVinfdlp....rn....vtsyiqriGRtgRag 111
                    v  +h+ l    re +   f +g  +vLiat  +++G+++p  ++V+    +    ++    +t+y q++GR+gR g
  KOO22020.1  66 RSGVGLHHSGLLPLLREVVELLFTEGMLRVLIATETLAMGLNLPARTVVFASTQKfdgtTSrliqPTEYTQMSGRAGRRG 145
                 4566778888889999999999**********************8888885555543333344446************75 PP

>> Homeodomain  Homeodomain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.6   0.0     0.084     5e+02       7      38 ..      29      60 ..      27      63 .. 0.81
   2 ?   -1.2   0.0      0.31   1.8e+03      31      44 ..     100     113 ..      98     115 .. 0.87
   3 ?    0.3   0.0      0.11   6.3e+02      11      37 ..     198     229 ..     195     235 .. 0.64
   4 ?    7.4   0.0   0.00067         4       8      37 ..     350     379 ..     348     383 .. 0.94

  Alignments for each domain:
  == domain 1  score: 0.6 bits;  conditional E-value: 0.084
                 S-HHHHHHHHHHHHHSSS-SHHHHHHHHHHHT CS
  Homeodomain  7 ftkeqleeLeklFeenrypsaeereeLAkklg 38
                 ++++++++ e++Fe+   + a+e + LA+ + 
   KOO22020.1 29 LSPQEIATVEEVFERAVSMLADEDRSLAQVTS 60
                 58999*********988888888888887665 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 0.31
                  HHHHHHHTS-HHHH CS
  Homeodomain  31 eeLAkklgLeerqV 44 
                  e LA+ l+L+ r V
   KOO22020.1 100 ETLAMGLNLPARTV 113
                  78********9998 PP

  == domain 3  score: 0.3 bits;  conditional E-value: 0.11
                  HHHHHHHHHH.....HSSS-SHHHHHHHHHHH CS
  Homeodomain  11 qleeLeklFe.....enrypsaeereeLAkkl 37 
                   l++Le+ F+     ++r   a++r   A++l
   KOO22020.1 198 ALTILERTFRtfqlaRERRRRAARRHTVAEQL 229
                  57889998885544445555555666666665 PP

  == domain 4  score: 7.4 bits;  conditional E-value: 0.00067
                  -HHHHHHHHHHHHHSSS-SHHHHHHHHHHH CS
  Homeodomain   8 tkeqleeLeklFeenrypsaeereeLAkkl 37 
                  t+e l++L ++F+ ++++  +er +L+++l
   KOO22020.1 350 TNERLKRLAAEFALEPTVGMDERDDLSTEL 379
                  8899***********************997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (458 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       405  (0.0225891); expected 358.6 (0.02)
Passed bias filter:                      311  (0.0173462); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.49u 0.23s 00:00:00.72 Elapsed: 00:00:00.40
# Mc/sec: 3476.26
//
Query:       KOO22021.1  [L=720]
Description: serine threonine-protein kinase nek10 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    5.1e-58  196.5   0.0    8.3e-58  195.8   0.0    1.3  1  Pkinase         Protein kinase domain
    2.2e-35  122.2   0.0    3.2e-35  121.7   0.0    1.2  1  Pkinase_Tyr     Protein tyrosine kinase
    1.2e-07   31.1   0.0    1.8e-07   30.4   0.0    1.2  1  Haspin_kinase   Haspin like kinase domain
    0.00014   21.3   0.0    0.00032   20.1   0.0    1.6  2  Kinase-like     Kinase-like
    0.00049   20.1   0.2      0.024   14.6   0.0    2.6  3  APH             Phosphotransferase enzyme family
     0.0032   17.1   0.0     0.0064   16.1   0.0    1.4  1  RIO1            RIO1 family
  ------ inclusion threshold ------
      0.011   14.5   0.0       0.02   13.7   0.0    1.3  1  Pkinase_fungal  Fungal protein kinase
      0.028   13.5   0.0      0.051   12.6   0.0    1.3  1  Seadorna_VP7    Seadornavirus VP7


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  195.8   0.0   3.7e-61   8.3e-58       1     208 [.     356     579 ..     356     610 .. 0.88

  Alignments for each domain:
  == domain 1  score: 195.8 bits;  conditional E-value: 3.7e-61
                 EEEEEEEEEESSEEEEEEEETTTTEEEEEEEEECHCHCHHHH..........HHHHHHHHHHHHHSCTTB--EEEEEEESSEEEEEEE--TTEBHHHHH CS
     Pkinase   1 yekleklGeGsfGkVykaveketgkivAvKkikkekakkkke..........kkvlrEikilkklkhpnivrlyevfeekdelylvleyveggeladll 89 
                 y ++e lG+G+fG+Vy++++++ +  +A+K++  +   +++           + + rE+kil +l+hpni+r++e+f++ ++ly+v+e+veg +l d+l
  KOO22021.1 356 YAVQELLGRGAFGSVYQVKKDTGETLFAMKELPLDAVAEMQPqqpsgaqqpvSYLKREVKILSTLQHPNIIRYFESFQQGKSLYIVMELVEGATLLDHL 454
                 678899**************9999**********9999988888999998888899**************************************99999 PP

                 H....HHSS--HHHHHHHHHHHHHHHHHHH.HTTEE-SS-SGGGEEEETTTEEEE-SGTTSEESSSSCS.BCTTTSCGGGS-HHHHTTSCBSHHHHHHH CS
     Pkinase  90 e....rkgslseeeakkiakqilegleylH.skgiiHrDlKpeNiLidekgelKitDFGlakelesssk.ltsfvgtseYlAPEvlkeneyskkvDvWs 182
                 +    + ++++e+++ +i++q++ +l+y+H +k+++HrDl p+N++i  +g++K++DFGlak+   +++ ++s+vgt  Y  PE+++++ y++k+D+Ws
  KOO22021.1 455 NslaeKGQTMPEARIWSIFTQMCLALRYIHkEKHVVHRDLTPSNVMITAEGVVKLADFGLAKQRMGTNSvMDSVVGTVLYQCPEIIQHETYGEKADIWS 553
                 989855566*********************5556****************************98888888***************************** PP

                 HHHHHHHHHHSS-STTTSSHHHHHHH CS
     Pkinase 183 lGvilyelltgkppfsgekgkekvek 208
                 lG+ily+  + +ppf+g++    +++
  KOO22021.1 554 LGCILYQTAMLRPPFEGSNPLVVATN 579
                 ****************7766554433 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  121.7   0.0   1.4e-38   3.2e-35       3     222 ..     358     584 ..     356     609 .. 0.81

  Alignments for each domain:
  == domain 1  score: 121.7 bits;  conditional E-value: 1.4e-38
                  EEEEEEEESSEEEEEEEEET.....TTTSSEEEEEEEEE.STTSSHHH.HHHHHHHHHHHHTS-BTTB--EEEEEESSSSEEEEEE--TTEBHHHHHH CS
  Pkinase_Tyr   3 lgkklGeGafGkVvegtlkg.....ekekkevkVavKtl.keeateee.keelleeakimkklkhpnivkllgvctkeepllivteyvkgGdLlkfLr 93 
                  +++ lG+GafG+V++ + ++       ++  ++ +  +  ++ + +++  + l +e+ki+++l+hpni+++     ++++l+iv+e+v+g +Ll++L+
   KOO22021.1 358 VQELLGRGAFGSVYQVKKDTgetlfAMKELPLDAVAEMQpQQPSGAQQpVSYLKREVKILSTLQHPNIIRYFESFQQGKSLYIVMELVEGATLLDHLN 455
                  5789***********9999877776444444444444442333333332677888*****************************************99 PP

                  HT..CTTTSBHHHHHHHHHHHHHHHHHHHH.TTEEEST-SGGGEEEEETTEEEE-STTTHEETTTSSEEEETTSSTSGGGGS-HHHHHHSEEEHHHHH CS
  Pkinase_Tyr  94 kk..ekekltlkdllsfalqvAkGmeyLes.kklvHrdlaarNvLlsenkvvkisDfGLardiekddeyvkkeeaklpvkWmapEslkekkftsksDv 188
                  +   + +++   ++ s+ +q++ +++y+++ k++vHrdl+  Nv+++ + vvk++DfGLa++   + + ++ ++    v +  pE+++++++ +k+D+
   KOO22021.1 456 SLaeKGQTMPEARIWSIFTQMCLALRYIHKeKHVVHRDLTPSNVMITAEGVVKLADFGLAKQR--MGTNSVMDSVVGTVLYQCPEIIQHETYGEKADI 551
                  873345666677899*************962679***************************99..56666778889999******************* PP

                  HHHHHHHHHHHTTSSGTTTTSHHHHHHHHHHTTE CS
  Pkinase_Tyr 189 WsfGvllwEiftlgespypglkneevleklkegk 222
                  Ws G +l+  +   + p++g ++  v++++ eg+
   KOO22021.1 552 WSLGCILYQTAM-LRPPFEGSNPLVVATNIVEGN 584
                  ********9877.578888887777777776555 PP

>> Haspin_kinase  Haspin like kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.4   0.0   8.2e-11   1.8e-07     108     262 ..     356     523 ..     328     547 .. 0.79

  Alignments for each domain:
  == domain 1  score: 30.4 bits;  conditional E-value: 8.2e-11
  Haspin_kinase 108 d......seklssevyqtke..kdkevvlKviplevledvtiskelslkelkslklvkgtypglllllqdkvlkekpdfyseqqlflvlllkdkGt 195
                           +++ ++ vyq+k+   ++  ++K +pl+++ +++ ++ +  +  + +  +k   + l  l + ++++    f++ + l++v++l ++ t
     KOO22021.1 356 YavqellGRGAFGSVYQVKKdtGETLFAMKELPLDAVAEMQPQQPSGAQ--QPVSYLKREVKILSTLQHPNIIRYFESFQQGKSLYIVMELVEGAT 449
                    02334559999********965567789***************888765..467777888677777888899999988899999************ PP

  Haspin_kinase 196 dLeev.....klksw..kqalsifwqivkiLyvaEtkfeFEHRdLhldniLvdknlnvtlidlklsRlessegk 262
                     L+++     k +++  + ++sif q+   L    ++ +  HRdL+  n+++ +++ v l d+ l++ +  ++ 
     KOO22021.1 450 LLDHLnslaeKGQTMpeARIWSIFTQMCLALRYIHKEKHVVHRDLTPSNVMITAEGVVKLADFGLAKQRMGTNS 523
                    **999766663444422678*********************************************998744443 PP

>> Kinase-like  Kinase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.1   0.0       3.5   7.9e+03      14      38 ..     356     379 ..     351     384 .. 0.77
   2 !   20.1   0.0   1.4e-07   0.00032     161     257 ..     485     575 ..     441     601 .. 0.85

  Alignments for each domain:
  == domain 1  score: -4.1 bits;  conditional E-value: 3.5
  Kinase-like  14 lvrgellkkgdrsvvfevkdqetge 38 
                  + ++ell++g ++ v++vk    ge
   KOO22021.1 356 YAVQELLGRGAFGSVYQVKKDT-GE 379
                  5678999999999999999654.55 PP

  == domain 2  score: 20.1 bits;  conditional E-value: 1.4e-07
  Kinase-like 161 qakglvhgkftvdnllldekgglmlggft.aLvragtkvvl.seve.kgfaPpEllgsrggytrknktkmthkldaWqlGlviyriwclklPltlate 255
                  ++k +vh ++t+ n++   +g ++l +f+ a  r gt+ v+ s v  + ++ pE++ +  +        +  k d W lG   y  + l  P++   +
   KOO22021.1 485 KEKHVVHRDLTPSNVMITAEGVVKLADFGlAKQRMGTNSVMdSVVGtVLYQCPEIIQH-ET--------YGEKADIWSLGCILYQTAMLRPPFEGSNP 573
                  4678************************8456899******555556789*****998.44........55599*******************99888 PP

  Kinase-like 256 ea 257
                  ++
   KOO22021.1 574 LV 575
                  76 PP

>> APH  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.1       1.4   3.2e+03      47     105 ..     271     335 ..     239     357 .. 0.48
   2 ?    2.7   0.0     0.045     1e+02      42      85 ..     412     454 ..     358     467 .. 0.60
   3 !   14.6   0.0   1.1e-05     0.024     146     196 ..     467     515 ..     454     517 .. 0.75

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 1.4
                 HHHTT-B--B-CTTBS-EEETTE.....EEEEEE----EE-SS..HHHHHHHHHHHHHHHHHHCCH CS
         APH  47 LakagvpvPevlagdtddeeigl.....lfalieyvpgrsllr..klsaaqlpellealgeflaal 105
                 La++ +++ ++l   t ++ + +     ++++  +++  ++ +  + +a+ +++l++  +e++ ++
  KOO22021.1 271 LAAHAFRALRILF-STERNRKIFqrlfpPVLFAAFIDLGHYVNslACYAPLAQQLFRLTAEMRVRM 335
                 2223223333333.2222222224444434444444433333344444455555555555555555 PP

  == domain 2  score: 2.7 bits;  conditional E-value: 0.045
                 HHHHHHHHTT-B--B-CTTBS-EEETTEEEEEEE----EE-SS.H CS
         APH  42 allrlLakagvpvPevlagdtddeeigllfalieyvpgrsllr.k 85 
                 ++ + L+ +  + P ++ + ++ ++   l+ ++e v+g++ll+  
  KOO22021.1 412 REVKILSTL--QHPNIIRYFESFQQGKSLYIVMELVEGATLLDhL 454
                 344444444..5699999999********************9932 PP

  == domain 3  score: 14.6 bits;  conditional E-value: 1.1e-05
                 HHHHHHHHHHHHHH--SSS-EEEE-SS-SGGGEEEC..TTEEEEE---TT- CS
         APH 146 eeleeqvlaalaallpgelptvllHgDlhpgNllvdpddgrvtGviDfeda 196
                 +++++ + ++++al+  + ++ ++H+Dl p N++++++ g v  + Df++a
  KOO22021.1 467 ARIWSIFTQMCLALRYIHKEKHVVHRDLTPSNVMITAE-GVV-KLADFGLA 515
                 4555556778888888899*****************44.444.57788776 PP

>> RIO1  RIO1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.0   2.8e-06    0.0064      57     145 ..     412     507 ..     391     521 .. 0.71

  Alignments for each domain:
  == domain 1  score: 16.1 bits;  conditional E-value: 2.8e-06
                 HHHHHHHHHHHTT.--S--EEEE.ETTEEEEE--EETTEEGGBHHHCG.-.....HHHHHHHHHHHHHHHHHHHHTSTEEESS-STTSEEEETTEEE CS
        RIO1  57 kEfrnLkrleeag.vpvPkpiel.krhvlvmefigedgvaapklkdve.e.....eeeaeelyeevleemrklykeaglvHaDLSeyNvlvdedkvv 145
                 +E+++L+ l++ + ++  +  +  k+  +vme+++   + + +l+ +  +     e+ + +++ ++  ++r + ke ++vH DL   Nv+++ ++vv
  KOO22021.1 412 REVKILSTLQHPNiIRYFESFQQgKSLYIVMELVE-GATLLDHLNSLAeKgqtmpEARIWSIFTQMCLALRYIHKEKHVVHRDLTPSNVMITAEGVV 507
                 66666666665554455555443144569*****9.3334444544442232456777888999999999999*******************99554 PP

>> Pkinase_fungal  Fungal protein kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.0   8.7e-06      0.02     315     387 ..     476     541 ..     466     554 .. 0.82

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 8.7e-06
  Pkinase_fungal 315 aIkghrsLflkagiLHrDiSenNilitdskkegerkglLiDLDlakelsddssesgarertGTleFmaievlk 387
                        ++r  ++++ ++HrD    N++it     +e    L+D+ lak+     ++s+    +GT+ +   e+++
      KOO22021.1 476 MCLALRYIHKEKHVVHRDLTPSNVMIT-----AEGVVKLADFGLAKQRMG--TNSVMDSVVGTVLYQCPEIIQ 541
                     56789999*******************.....788899********9985..666677889998777666666 PP

>> Seadorna_VP7  Seadornavirus VP7
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   2.3e-05     0.051     153     187 ..     479     512 ..     465     524 .. 0.86

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 2.3e-05
  Seadorna_VP7 153 dLmdfhsestnllhGDcnpenlmcDknGylklvDP 187
                   +L  +h ++++++h D +p+n+m    G++kl D 
    KOO22021.1 479 ALRYIH-KEKHVVHRDLTPSNVMITAEGVVKLADF 512
                   688999.7789*********************995 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (720 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       418  (0.0233142); expected 358.6 (0.02)
Passed bias filter:                      347  (0.0193541); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.57u 0.25s 00:00:00.82 Elapsed: 00:00:00.39
# Mc/sec: 5593.19
//
Query:       KOO22022.1  [L=464]
Description: DNA polymerase delta subunit 2 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    3.1e-38  131.2   0.0    4.1e-38  130.9   0.0    1.1  1  DNA_pol_E_B  DNA polymerase alpha/epsilon subunit B
    2.9e-31  108.3   0.0    4.6e-31  107.6   0.0    1.3  1  DNA_pol_D_N  DNA polymerase delta subunit OB-fold domain
  ------ inclusion threshold ------
      0.058   13.1   0.3        8.9    6.1   0.0    2.7  3  RIIa         Regulatory subunit of type II PKA R-subunit


Domain annotation for each model (and alignments):
>> DNA_pol_E_B  DNA polymerase alpha/epsilon subunit B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  130.9   0.0   6.9e-42   4.1e-38       1     210 [.     191     413 ..     191     414 .. 0.91

  Alignments for each domain:
  == domain 1  score: 130.9 bits;  conditional E-value: 6.9e-42
                  EEEEES--S-TT---...-HHHHHHHHHHH.......HTT--SEEEEES-SSBTTSHHHHHT---............S--SSHHHHHHHHTHHHHTTS CS
  DNA_pol_E_B   1 vvivsglnldndnrs...leaLrkiLqgya......peesppdvlilaGnfvdaahkaiasskvs............tdekkenfdalalllsilesl 77 
                  v++vsgl++ +  ++   +++L + L+g+         +s +++li+aGn    ++ a a +++              +++k   +++++l+++l  +
   KOO22022.1 191 VALVSGLHIGHRTQDmlpVQLLAEHLTGQLgcdedhRLQSNIVRLIIAGNASTNPALALADASGGewqpsdalkrmaPTDQKALAQSVRTLDQFLTAV 288
                  789******966666788**************998888999*********7665555544444445********9999999999999*********** PP

                  -TTSEEEEE--TTBTT-S-SBSB----TTTTT--TTT...EEE--BSEEEEETTEEEEE--S-HHHH---EEESHHHHHS-HHHHHHHHHHHHTBS-- CS
  DNA_pol_E_B  78 lekttvvlvPgpnDpanstvlPqqPlprlllsrikrvfkelklvtNPsrielnsvevvltsddivkdlkreslkesntdverlrklvktildqrhlaP 175
                  ++ ++v+l+Pg +Dp+n  +lPqqP++  ll+++++ ++ l+l+tNP+ +++++v++v++ ++ ++d++r++ ++++     l+ lv+  l+ +hlaP
   KOO22022.1 289 SSAIPVDLMPGSDDPCNF-LLPQQPFHTSLLPHSSQLAT-LNLCTNPYCCDVDGVRIVGSAGQPLDDMQRYVPSDDR-----LATLVR-SLEFQHLAP 378
                  ******************.*****************977.**********************************999.....566666.58******* PP

                  -SS.--B-GGGGGGGB-GGG---SEEE---SS--EE CS
  DNA_pol_E_B 176 lap.tlrpvswdkddalvleplPdvlvlpdelpeFa 210
                  +ap +l +++++ +d++v++++P+++++++ +p F 
   KOO22022.1 379 TAPdALGCYPFERRDPFVINECPHLYFAGN-QPRFE 413
                  ******************************.99995 PP

>> DNA_pol_D_N  DNA polymerase delta subunit OB-fold domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  107.6   0.0   7.7e-35   4.6e-31       1     130 []      34     169 ..      34     169 .. 0.91

  Alignments for each domain:
  == domain 1  score: 107.6 bits;  conditional E-value: 7.7e-35
  DNA_pol_D_N   1 QYaniYfaRleqlkprlleaakekw.skeelkvnrildlkegeecivvGtiykemklkpsvlkeiak....edesapqaerkkyvsekdellLEDesg 93 
                  Q++n+YfaRl++l+pr+ +aak++w ++   +v ++ld  ++ + + +Gt+y emk kp+++++ ++    ++ ++++   +ky+ e+d llLED+sg
   KOO22022.1  34 QFSNLYFARLNALRPRVEAAAKARWgATALENVVKVLDAVPDATTVAIGTLYREMKGKPDIMEDSTRdvleKRPAESERMFTKYCGEDDVLLLEDDSG 131
                  9************************755566899*******************************9977655566677788999999*********** PP

  DNA_pol_D_N  94 rvrLsgs.gieseklvtGvvvavlGvetengdfeVedi 130
                  r+ L+   ++  + +vtG+v +v+G+++e+g++ V+d+
   KOO22022.1 132 RLALKLPeALADTIFVTGMVACVRGKLSEKGELVVDDV 169
                  *****874677788*********************996 PP

>> RIIa  Regulatory subunit of type II PKA R-subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.1   0.0    0.0062        37      22      35 ..      32      45 ..      17      47 .. 0.84
   2 ?    6.1   0.0    0.0015       8.9       6      20 ..      94     108 ..      90     109 .. 0.91
   3 ?   -3.9   0.0       1.9   1.1e+04      18      23 ..     258     263 ..     258     263 .. 0.86

  Alignments for each domain:
  == domain 1  score: 4.1 bits;  conditional E-value: 0.0062
                HHHHHHHHHHHHHH CS
        RIIa 22 vlqFaadYFekLee 35
                + qF+  YF +L++
  KOO22022.1 32 PHQFSNLYFARLNA 45
                469*********97 PP

  == domain 2  score: 6.1 bits;  conditional E-value: 0.0015
                 HHHHHHHHHHHH--S CS
        RIIa   6 LLedltveVlraqPs 20 
                 + ed+t++Vl+ +P+
  KOO22022.1  94 IMEDSTRDVLEKRPA 108
                 789***********7 PP

  == domain 3  score: -3.9 bits;  conditional E-value: 1.9
                 --S-HH CS
        RIIa  18 qPsDvl 23 
                 qPsD+l
  KOO22022.1 258 QPSDAL 263
                 9***86 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (464 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       323  (0.0180155); expected 358.6 (0.02)
Passed bias filter:                      300  (0.0167327); expected 358.6 (0.02)
Passed Vit filter:                         6  (0.000334653); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.50u 0.20s 00:00:00.70 Elapsed: 00:00:00.38
# Mc/sec: 3619.84
//
Query:       KOO22023.1  [L=268]
Description: uracil-DNA glycosylase, partial [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.2e-22   79.2   0.0    4.8e-22   78.6   0.0    1.2  1  UDG       Uracil DNA glycosylase superfamily


Domain annotation for each model (and alignments):
>> UDG  Uracil DNA glycosylase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   78.6   0.0   2.7e-26   4.8e-22       7     151 ..     101     254 ..      96     257 .. 0.88

  Alignments for each domain:
  == domain 1  score: 78.6 bits;  conditional E-value: 2.7e-26
                 T-SEEEEESSTCHH.HHHHSSSS.-STT--HH.HHHHH.CCCCCCCHHG.............CTEEEEESSS....SEC.GCTTCCCCTCCHH.HHHHH CS
         UDG   7 dakvvivGeaPgae.edatglpFsgragnllr.kllne.aglkrdlese.............qgvyitnvvkcrppgnr.dtptsaeikacap.lleee 87 
                  ++vvi+G++P++  ++a+gl+Fs+  g  ++ +l n+ ++l++d +++             +gv + n+ +    + r ++ +s++ + +++ ++++ 
  KOO22023.1 101 AVRVVILGQDPYHGrGQAHGLAFSVSRGVEVPpSLKNIyTELEQDVKDFrrpahgnleswaqRGVMMVNATL----TVRqGEANSHQ-AYGWQtFTDAV 194
                 689**********************999666615555566777765555***********************....7555899****.9********** PP

                 HHHHH....SSEEEEESHHHHHH..HHHHSCESCCCSCT..SEEEEES-SSTTTTT.TTTSHHHHHHHHH CS
         UDG  88 iellk....prlivllGktaakallgeklgklrgklleak.irvlplphPsplnrn.ffksnpelkaeaw 151
                 i+ l+    p++++l+G  a+k+          ++ +++  ++v+ + hPspl+++ f ++++++ a+++
  KOO22023.1 195 IRVLNsketPTVFILWGGFAQKK----------CTMINRSrHCVIETAHPSPLSVTkFRGCRCFSAANEF 254
                 ***********************..........79999988***************98899999988876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (268 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       505  (0.0281667); expected 358.6 (0.02)
Passed bias filter:                      465  (0.0259356); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.24s 00:00:00.69 Elapsed: 00:00:00.40
# Mc/sec: 1992.06
//
Query:       KOO22024.1  [L=358]
Description: hypothetical protein Ctob_003584 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
  ------ inclusion threshold ------
       0.16   11.3  29.1      0.075   12.4   0.8    2.4  2  DUF4407       Domain of unknown function (DUF4407)
        0.2   11.4   5.9       0.16   11.6   2.5    2.4  2  DUF842        Eukaryotic protein of unknown function (DUF842)
       0.95    9.9   3.2         33    4.9   0.0    3.4  3  PLAC9         Placenta-specific protein 9


Domain annotation for each model (and alignments):
>> DUF4407  Domain of unknown function (DUF4407)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.7  21.1    0.0055        33     130     235 ..      53     167 ..      22     179 .. 0.65
   2 ?   12.4   0.8   1.2e-05     0.075     118     225 ..     227     339 ..     204     353 .. 0.72

  Alignments for each domain:
  == domain 1  score: 3.7 bits;  conditional E-value: 0.0055
     DUF4407 130 a...........ltaelaeleaqiaalqaeidaaearldalraeaqkeldgtkgtgttgvaGkgpaakekkaqldaaqaelaelkakldatarlaalra 217
                 a           l ++l++l+a+++ +++  +a e+r+++l a++++ +d    +g++ ++G     k  ++qld  q++l+++  + + ++r+a++ +
  KOO22024.1  53 AqqseaaprekkLFNRLEKLQAELKLAREHRAAEESRAADLAAHLEQIVDA--AKGENETPGTKILLKVTNEQLDVTQKALQQALFRASDAERQASDAS 149
                 023332334444778888888888888888888888888888888888887..5556689***********************9998553333333333 PP

     DUF4407 218 elaeleaerakeraasqa 235
                   a+ ++++ +++++ +a
  KOO22024.1 150 AEAKRAQDLLEQAEQREA 167
                 333322222222222222 PP

  == domain 2  score: 12.4 bits;  conditional E-value: 1.2e-05
     DUF4407 118 eeakelkeqlaaaltaelaeleaqiaalqaeidaaearldalraeaqkeldgtk.......gtgttgvaGkgpaakekkaqldaaqaelaelkakldat 209
                  + +el++ +++ l a+++  ++ +a+l ++ ++a+++++a r+ ++++l+          ++g +  +  gp+a+       + +  l+++ +k   +
  KOO22024.1 227 HQRDELRSLVDQRLPAQQEHHRKLRAELAQQKQEAHEQITAMRESLEQHLEHLDglrrgsiSQGSEEQNNLGPVARGLLVRSRKVDGVLDKVADK--MD 323
                 56677777788888888888888888888888888888888888888888765577788888888888999999999888888888888888888..44 PP

     DUF4407 210 arlaalraelaeleae 225
                   l+++  +++++  +
  KOO22024.1 324 GVLDNAMVRMDSIVGR 339
                 4444444444444333 PP

>> DUF842  Eukaryotic protein of unknown function (DUF842)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   2.5   2.7e-05      0.16      66     126 ..     122     193 ..      70     198 .. 0.77
   2 ?    0.1   0.1       0.1   6.1e+02      22      66 ..     248     274 ..     203     284 .. 0.61

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 2.7e-05
      DUF842  66 qEleqfqerLqrcvmvCqdkakdkl..........gp.nssekqtakaekelekCvakCvddhiklLpkikk 126
                 + l+  q+ Lq+++ +++d  +++           +  ++ e+++a+++++l k v+kC + +  +Lp ++k
  KOO22024.1 122 EQLDVTQKALQQALFRASDAERQASdasaeakraqDLlEQAEQREAALDQRLTKLVDKCSQASTLQLPPMSK 193
                 4444445555555554444443333333444333244677999999***********************986 PP

  == domain 2  score: 0.1 bits;  conditional E-value: 0.1
      DUF842  22 rklqkkmfkcaakCcddrkasresveqCvekCseplqkaqkvvqq 66 
                 rkl+++  +   +  ++ +a res+                  +q
  KOO22024.1 248 RKLRAELAQQKQEAHEQITAMRESL------------------EQ 274
                 3333333333333333333333333..................32 PP

>> PLAC9  Placenta-specific protein 9
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.1   0.2      0.18   1.1e+03      31      53 ..      13      35 ..      11      46 .. 0.80
   2 ?    2.6   0.1     0.031   1.8e+02      39      57 ..     209     227 ..     201     230 .. 0.90
   3 ?    4.9   0.0    0.0056        33      24      61 ..     262     299 ..     251     303 .. 0.86

  Alignments for each domain:
  == domain 1  score: 0.1 bits;  conditional E-value: 0.18
       PLAC9 31 eetvektvehleaevkGllgqle 53
                e++vek v  l   v+ l  q e
  KOO22024.1 13 EDIVEKRVRVLRLHVETLTRQAE 35
                78999999999999988877766 PP

  == domain 2  score: 2.6 bits;  conditional E-value: 0.031
       PLAC9  39 ehleaevkGllgqleelaw 57 
                  hl++ev+  ++ le+la 
  KOO22024.1 209 RHLQSEVRLKMAALEGLAH 227
                 6****************97 PP

  == domain 3  score: 4.9 bits;  conditional E-value: 0.0056
       PLAC9  24 qsrldvieetvektvehleaevkGllgqleelawnlPp 61 
                 ++++  + e +e+ +ehl+   +G ++q  e   nl p
  KOO22024.1 262 HEQITAMRESLEQHLEHLDGLRRGSISQGSEEQNNLGP 299
                 788899**************999999998888777754 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (358 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2100  (0.117129); expected 358.6 (0.02)
Passed bias filter:                      540  (0.0301188); expected 358.6 (0.02)
Passed Vit filter:                        77  (0.00429472); expected 17.9 (0.001)
Passed Fwd filter:                        23  (0.00128284); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.77u 0.32s 00:00:01.09 Elapsed: 00:00:00.47
# Mc/sec: 2300.09
//
Query:       KOO22025.1  [L=503]
Description: RNA binding motif protein x-linked 2 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    3.1e-19   68.6   0.0    7.1e-19   67.4   0.0    1.7  1  RRM_1         RNA recognition motif. (a.k.a. RRM, RBD, or RNP
    1.5e-06   28.3   0.0    3.4e-06   27.1   0.0    1.6  1  RRM_7         RNA recognition motif
     0.0061   16.2   0.0      0.015   14.9   0.0    1.6  1  RRM_5         RNA recognition motif. (a.k.a. RRM, RBD, or RNP
     0.0072   16.6  20.0     0.0072   16.6  20.0    3.6  3  ATG16         Autophagy protein 16 (ATG16)
  ------ inclusion threshold ------
      0.037   14.0   0.0      0.063   13.3   0.0    1.4  1  Nup35_RRM_2   Nup53/35/40-type RNA recognition motif
       0.13   11.7   5.5        2.2    7.6   0.4    2.5  2  FliD_C        Flagellar hook-associated protein 2 C-terminus
       0.31   11.5   6.3         12    6.4   3.5    3.4  2  NPV_P10       Nucleopolyhedrovirus P10 protein
       0.51    8.8  35.5      0.015   13.9  14.1    2.8  2  SART-1        SART-1 family
        0.9    7.4   2.9        1.3    6.9   2.9    1.2  1  Prominin      Prominin
        1.3    9.1   4.3        2.1    8.4   2.5    2.2  2  Baculo_PEP_C  Baculovirus polyhedron envelope protein, PEP, C


Domain annotation for each model (and alignments):
>> RRM_1  RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.4   0.0     4e-22   7.1e-19       1      70 []      46     116 ..      46     116 .. 0.99

  Alignments for each domain:
  == domain 1  score: 67.4 bits;  conditional E-value: 4e-22
                 EEEESETTTSSHHHHHHHHHTTSCEEEEEEEEE.TTTSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE CS
       RRM_1   1 lfVgnLppdvteeeLkelFskfGpiksiklvrd.etgkskgfafVeFeskedAekAlealngkklggrelk 70 
                 ++Vg+Lppd++e ++  +Fs+fG+i++++++rd  tgk++gfaf+ +e++++ + A++++ng kl gr+l+
  KOO22025.1  46 VYVGGLPPDLSEGDVVVVFSQFGEIVDVNMPRDkDTGKTRGFAFIGYEDQRSTALAVDNFNGAKLLGRTLR 116
                 8*******************************************************************986 PP

>> RRM_7  RNA recognition motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.1   0.0   1.9e-09   3.4e-06       1      68 [.      43     103 ..      43     114 .. 0.84

  Alignments for each domain:
  == domain 1  score: 27.1 bits;  conditional E-value: 1.9e-09
       RRM_7   1 srkvFvGGlPiDiteeelkatfkefgkvl.vdwPkkaeskkkaaenskaakgyvflvfedeksvkaLle 68 
                 s  v+vGGlP+D++e +++  f++fg+++ v+ P+ + + k+        +g++f+ +ed++s +  ++
  KOO22025.1  43 SAYVYVGGLPPDLSEGDVVVVFSQFGEIVdVNMPRDKDTGKT--------RGFAFIGYEDQRSTALAVD 103
                 5679**********************9644999988776554........5999999999999876665 PP

>> RRM_5  RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.0   8.1e-06     0.015      19     115 ..      36     137 ..      21     141 .. 0.83

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 8.1e-06
       RRM_5  19 gaagvaegsVllVyglepdkvnldklFnlfclYgnvervkflktkk.....etalvqmgdasaveravqHLnnaklfgk..rlevalSKqqavsekepf 110
                  +a +++++ + V gl pd +  d +  +f+++g++  v + + k+     + a++   d+++  +av+ +n+akl g+  r + + S +++  +k+p 
  KOO22025.1  36 WHAQYKDSAYVYVGGLPPDLSEGD-VVVVFSQFGEIVDVNMPRDKDtgktrGFAFIGYEDQRSTALAVDNFNGAKLLGRtlRCDHCASYHEE-QKKDPA 132
                 4778999999******99988877.5689***********9998843333388**************************4444568999999.689999 PP

       RRM_5 111 eledd 115
                 +l+d+
  KOO22025.1 133 KLPDH 137
                 99997 PP

>> ATG16  Autophagy protein 16 (ATG16)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?  -12.0  19.3        10   1.8e+04      74     179 ..     145     243 ..     108     251 .. 0.43
   2 ?   -3.8   8.1       6.8   1.2e+04     121     148 ..     220     247 ..     208     317 .. 0.74
   3 !   16.6  20.0     4e-06    0.0072      86     178 ..     380     472 ..     362     480 .. 0.87

  Alignments for each domain:
  == domain 1  score: -12.0 bits;  conditional E-value: 10
       ATG16  74 akiqsleqklaqlreelaelyksrgelaqrllelneelqkleeklkedeerlaeleaeraaletklkdreeelrekeklvq...............dlq 157
                 a+i++ +  + + ++el e++ +++el  + + l++e +  e+ l+e+  r +e+ea                       +               d q
  KOO22025.1 145 AQIEEKKRGMERRNAELDEALAAKAELFAQGRGLETEEEHEERVLREQFGRRKEVEAA----------------------DksagriaavlakrkgDAQ 221
                 3333333333333444444444444433333333333333333333333333333322......................0111112222222222444 PP

       ATG16 158 DElsaLqlqlnqaEeklrklek 179
                  E++  + q +q+E+++r+  +
  KOO22025.1 222 REIAEETRQQQQREDRKRQRDE 243
                 4444444444444444444443 PP

  == domain 2  score: -3.8 bits;  conditional E-value: 6.8
       ATG16 121 deerlaeleaeraaletklkdreeelre 148
                  ++++ae +++ ++ e++ ++r+ee r+
  KOO22025.1 220 AQREIAEETRQQQQREDRKRQRDEEARQ 247
                 3444444445555555555555544443 PP

  == domain 3  score: 16.6 bits;  conditional E-value: 4e-06
       ATG16  86 lreelaelyksrgelaqrllelneelqkleeklkedeerlaeleaeraaletklkdreeelrekeklvqdlqDElsaLqlqlnqaEeklrkle 178
                    e a++ ++ +elaq+l +  e++ +l+++l+++  + + +e+ ra+l++  ++  ee+  +++++ + + E++ L+ +l+    + ++l+
  KOO22025.1 380 SSREIAKVRRRSEELAQQLETQAEQMTTLQSELMAQGGEARVVERLRAKLQRVEQQSSEEVTTLQRALGKYKKEVILLNSELSRSKREEERLR 472
                 56799*****************************************************************************97655444443 PP

>> Nup35_RRM_2  Nup53/35/40-type RNA recognition motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.0   3.5e-05     0.063       4      53 .]      46     102 ..      43     102 .. 0.85

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 3.5e-05
  Nup35_RRM_2   4 vaVsGydteli.elVlehFasfGeIvkhyvp......kevsvmyvkfesekdaekAL 53 
                  v V G +++l   +V   F +fGeIv+ ++p      k + ++++ +e+ ++ + A+
   KOO22025.1  46 VYVGGLPPDLSeGDVVVVFSQFGEIVDVNMPrdkdtgKTRGFAFIGYEDQRSTALAV 102
                  667777777764678888******************9999*********99988876 PP

>> FliD_C  Flagellar hook-associated protein 2 C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.6   0.4    0.0013       2.2     191     238 ..     365     412 ..     339     414 .. 0.82
   2 ?    5.8   0.7    0.0044       7.9     182     225 ..     448     497 ..     421     500 .. 0.73

  Alignments for each domain:
  == domain 1  score: 7.6 bits;  conditional E-value: 0.0013
                 HHHHHHHHXXXXHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHH CS
      FliD_C 191 tlqtasknltkqikdldkkiedldkrletleerlkkqfaalekavskl 238
                 +l++ +  +++ ++d +++i+++ +r+e+l ++l++q +++ ++ s+l
  KOO22025.1 365 ALDEVQAAYERLQRDSSREIAKVRRRSEELAQQLETQAEQMTTLQSEL 412
                 556667777888899999***********************9988765 PP

  == domain 2  score: 5.8 bits;  conditional E-value: 0.0044
                 HHHH......STT.SHHHHHHHHXXXXHHHHHHHHHHHHHCHHHHHHHHH CS
      FliD_C 182 ksyv......kssngtlqtasknltkqikdldkkiedldkrletleerlk 225
                  +y       +s+ +  + ++++l + ++d +++i+d+d+rl++l++ l+
  KOO22025.1 448 GKYKkevillNSELSRSKREEERLRRHQYDATDDIQDIDRRLNALQQFLE 497
                 333333334455556778999***********************998765 PP

>> NPV_P10  Nucleopolyhedrovirus P10 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.4   3.5    0.0068        12       9      58 ..     362     412 ..     356     464 .. 0.75
   2 ?    3.3   0.0     0.062   1.1e+02      11      28 ..     480     497 ..     476     502 .. 0.81

  Alignments for each domain:
  == domain 1  score: 6.4 bits;  conditional E-value: 0.0068
     NPV_P10   9 IradikavddkVdalqqqv.ddvqenlpdvtelnekLdaqsaqLaeletkv 58 
                  r++  +v+   + lq     ++++  +  +el ++L+ q++q+++l++++
  KOO22025.1 362 LRDALDEVQAAYERLQRDSsREIAKVRRRSEELAQQLETQAEQMTTLQSEL 412
                 455555555555555543324455555556789999999999999999854 PP

  == domain 2  score: 3.3 bits;  conditional E-value: 0.062
     NPV_P10  11 adikavddkVdalqqqvd 28 
                 +di+++d +++alqq ++
  KOO22025.1 480 DDIQDIDRRLNALQQFLE 497
                 799999999999998765 PP

>> SART-1  SART-1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.3  12.6      0.11     2e+02     456     561 ..     125     247 ..      73     256 .. 0.49
   2 ?   13.9  14.1   8.4e-06     0.015       2     143 ..     322     477 ..     321     481 .. 0.46

  Alignments for each domain:
  == domain 1  score: 0.3 bits;  conditional E-value: 0.11
      SART-1 456 eaeeeeeeeeke.eeeese.keeskelsetgl.eeEptvskGlaaaLkllkqkglle.ete.e....eekqrerqkflaekrrr............eek 533
                 e++++++  +k  ++ + + ++++ e+++ g+    +++++ laa  +l  q   le e+e e     e++ +r++  a+ +++            +++
  KOO22025.1 125 EEQKKDP--AKLpDHVARKlSDAQIEEKKRGMeRRNAELDEALAAKAELFAQGRGLEtEEEhEervlREQFGRRKEVEAADKSAgriaavlakrkgDAQ 221
                 3332222..223233333343444444444444556666888888888777666666222221234433444444444444433555544442222222 PP

      SART-1 534 rreererdrksgkedkqsarerekyarr 561
                 r+ ++e  +++++ed++++r++e  ar+
  KOO22025.1 222 REIAEETRQQQQREDRKRQRDEE--ARQ 247
                 22222222222444444444333..222 PP

  == domain 2  score: 13.9 bits;  conditional E-value: 8.4e-06
      SART-1   2 lSiEEtNklRakLGLkPLe.....ddekkeekskkeddeeedaastledreaeaeenvkkaqeeeakk..kkreelkerikkarekrereaklkgktLg 93 
                 +S++EtN+lR +LGLkPL+         +++ + +      +  +++ d+ ++a+e +++ + +e +k  +++eel+++++++ e+    ++  + + g
  KOO22025.1 322 ISVQETNALRSSLGLKPLRdieeiT---HKTGHFRRFPAFIQMLRDALDEVQAAYERLQRDSSREIAKvrRRSEELAQQLETQAEQMTTLQSELMAQGG 417
                 8******************553220...22222233333334444555555666666666666655542244466666666644433333322222222 PP

      SART-1  94 edddedddakaWvkkskkrqkekkeaearakareldee...................eeeekaaaaeyt 143
                 e     +  +a +++  +++ e+   ++r        +                   +eee+ ++++y+
  KOO22025.1 418 E-ARVVERLRAKLQRVEQQSSEEVTTLQR--------AlgkykkevillnselsrskREEERLRRHQYD 477
                 2.111133333333333333322222222........11222223566666666655334455555555 PP

>> Prominin  Prominin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.9   2.9   0.00071       1.3     625     710 ..     397     498 ..     340     502 .. 0.61

  Alignments for each domain:
  == domain 1  score: 6.9 bits;  conditional E-value: 0.00071
    Prominin 625 nletlaekleelanelsngk..knlkqslkneaqdlraiqqelvlplessvkklkksvkklde..............ensdlqesikkllaaveraenf 707
                 +let ae++ +l++el  +   + + ++l+ + q +++  +e v++l++++ k kk+v  l++              ++ d ++ i+++ ++++++++f
  KOO22025.1 397 QLETQAEQMTTLQSELMAQGgeARVVERLRAKLQRVEQQSSEEVTTLQRALGKYKKEVILLNSelsrskreeerlrrHQYDATDDIQDIDRRLNALQQF 495
                 344444444444444433335555555666666666666666666666666666666665555555444444444445555777777777777777777 PP

    Prominin 708 lkk 710
                 l++
  KOO22025.1 496 LEA 498
                 765 PP

>> Baculo_PEP_C  Baculovirus polyhedron envelope protein, PEP, C terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.4   2.5    0.0012       2.1      32     100 ..     384     453 ..     354     463 .. 0.81
   2 ?    3.5   0.2     0.039        69      22      78 ..     422     491 ..     415     500 .. 0.56

  Alignments for each domain:
  == domain 1  score: 8.4 bits;  conditional E-value: 0.0012
  Baculo_PEP_C  32 ilaqlatlldaietqLnalsedlksllaeldt..rldtlltnLtdalnalqdtlrneLtnlnsiltnLlss 100
                   i a++ +  +++++qL++ +e+++ l +el +    + ++++L ++l++++++ ++e t+l+  l     +
    KOO22025.1 384 I-AKVRRRSEELAQQLETQAEQMTTLQSELMAqgGEARVVERLRAKLQRVEQQSSEEVTTLQRALGKYKKE 453
                   3.888888889999999999999999998887445677899********************9999876555 PP

  == domain 2  score: 3.5 bits;  conditional E-value: 0.039
  Baculo_PEP_C  22 LnairlqnvqilaqlatlldaietqLnalsedlksllaeldt.............rldtlltnLtdalna 78 
                   ++ +r+++  +  q ++ ++++++ L++ ++++  l +el++             + ++ ++ +++ lna
    KOO22025.1 422 VERLRAKLQRVEQQSSEEVTTLQRALGKYKKEVILLNSELSRskreeerlrrhqyDATDDIQDIDRRLNA 491
                   4556666666666666666777777777666666666666655555554444433333334444444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (503 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2514  (0.14022); expected 358.6 (0.02)
Passed bias filter:                      831  (0.0463495); expected 358.6 (0.02)
Passed Vit filter:                       118  (0.00658152); expected 17.9 (0.001)
Passed Fwd filter:                        38  (0.00211947); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.97u 0.35s 00:00:01.31 Elapsed: 00:00:00.49
# Mc/sec: 3079.73
//
Query:       KOO22026.1  [L=246]
Description: diaminopimelate epimerase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    5.2e-53  178.3   0.0    1.4e-32  112.4   0.0    2.0  2  DAP_epimerase  Diaminopimelate epimerase


Domain annotation for each model (and alignments):
>> DAP_epimerase  Diaminopimelate epimerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  112.4   0.0     8e-37   1.4e-32       1     118 [.       7     126 ..       7     129 .. 0.96
   2 !   64.2   0.0   6.6e-22   1.2e-17       2      76 ..     161     234 ..     160     243 .. 0.94

  Alignments for each domain:
  == domain 1  score: 112.4 bits;  conditional E-value: 8e-37
                    EEEECSSEEEEEEECCTTC.SSHHHHHHHHHHHTTTTSTT-SEEEEEE..EEETTEEEEEEEETTTEEESTTHCCHHHHHHHHHCTTS-S-SEEEE CS
  DAP_epimerase   1 fakshGnpndvvvvddvea.elvleaelvaalcdreagpgadgvlfvk..psgeediklryfnrdgseaemCGnGvrvfaaylreggletkkevtv 93 
                    fak+hG++nd+v++d +e+ e vl++e++a++cdr++g+gadgv+fv   +++e++ ++r++n+dgse emCGnG+r++a+++ +    + ++  +
     KOO22026.1   7 FAKYHGLGNDFVMIDCREQgEPVLTPEQAARMCDRNFGVGADGVIFVLpsDVPEAQTRMRIYNSDGSEPEMCGNGIRCMAKFVSDIDASRAARGAI 102
                    89**************999789999***********************8888999***************************************** PP

                    EETTEEEEEEEECTTSSEEEEEE-- CS
  DAP_epimerase  94 etlgGeleievkddgekvkvdmGka 118
                     t +G ++ e++ dg+ v+vdmG++
     KOO22026.1 103 ATGAGLIVPELQADGT-VRVDMGEP 126
                    ***************8.******98 PP

  == domain 2  score: 64.2 bits;  conditional E-value: 6.6e-22
                    EEECSSEEEEEEECCTTCSSHHHHHHHHHHHTTTTSTT-SEEEEEEEEETTEEEEEEEETTTEEESTTHCC.HHHH CS
  DAP_epimerase   2 akshGnpndvvvvddveaelvleaelvaalcdreagpgadgvlfvkpsgeediklryfnrdgseaemCGnG.vrvf 76 
                    ++++Gnp+++v+vdd+++ ++     ++ +++++ +p++++ +fv++ +++++++++++r+++ + +CG+  ++ +
     KOO22026.1 161 CVGMGNPHAIVFVDDIDTLDLAA--VGPLFEKHPVFPKKTNTEFVQVLSPTHLRMKVWERGAGPTLACGTDaTATV 234
                    799**************988888..*********************************************877766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (246 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       284  (0.0158403); expected 358.6 (0.02)
Passed bias filter:                      269  (0.0150036); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.23s 00:00:00.64 Elapsed: 00:00:00.39
# Mc/sec: 1875.78
//
Query:       KOO22027.1  [L=614]
Description: hypothetical protein Ctob_003583 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.4e-18   66.0   0.0    3.2e-18   65.6   0.0    1.1  1  UDPGP     UTP--glucose-1-phosphate uridylyltransferase


Domain annotation for each model (and alignments):
>> UDPGP  UTP--glucose-1-phosphate uridylyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.6   0.0   1.8e-22   3.2e-18      56     319 ..     120     410 ..      95     439 .. 0.77

  Alignments for each domain:
  == domain 1  score: 65.6 bits;  conditional E-value: 1.8e-22
       UDPGP  56 vlkLnGglGtsmGckgpKslieVr..dgktfLdlivqqie.......elnkkynvdvPlvlmnSfnTdedtekilkkykk...kkvdiltfnqsryPri 142
                  + ++GglG ++G +  K  ++ +   g ++L+  ++qi        e +++  +++Pl +m+S  Td++t+ +l  +++    + +i+ + q+++P i
  KOO22027.1 120 FMLVAGGLGERLGYSNIKVGLPTEsfTGRCYLQYYIEQILayqayarETRRDDSITLPLAMMTSADTDARTKALLAAHSNfgmAEGQITLLMQGKVPSI 218
                 67899***************9999889*************99999999999999*********************955544358899************ PP

       UDPGP 143 skesllpvekkakkeekeewyPpGhGdlyesLknsglldkllaeGkeyiFvsniDNlgatvDlki.lnllvekkaeflmevtektradvkgGtli.... 236
                 + ++  ++ +++    + +  P GhGd+ + L+ sg+++k  + Gk+++F+    N  a   + + l+  v+++ ++   ++ +   +  gG+ +    
  KOO22027.1 219 EDNDGRIALDETGF--QIQTKPHGHGDVHSLLHMSGTVKKWRKMGKKWLFIFQDTNAFALQSCLLgLGASVKNGFDMNSVCVPRIAGEAIGGICClksq 315
                 99888887777753..5899*********************************9998887776554788888999988899999999999999996554 PP

       UDPGP 237 ..eyegklrlleiaqvpk..ehveefks......vkkfkif..ntnniwinlkalkrlveekelkleiivnkktldegekviqletavgaaiksF 319
                   ++++    +e++q+ +  +++e+fk+      v+ f ++    n + ++l++ +  +ee++  ++  vn+k+ d+ ++ ++  t +   ++ F
  KOO22027.1 316 npDVKDLTINVEYNQIDSmlRATEQFKDgdvndpVTGFSVWpgSINELVFKLESYDGALEESKGAVPEFVNPKYKDSTKTAFKSPTRLECMMQDF 410
                 44455666678888886522456666652222223344444222355556666666666666666666666666666665666666666666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (614 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       368  (0.0205254); expected 358.6 (0.02)
Passed bias filter:                      354  (0.0197445); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.52u 0.26s 00:00:00.78 Elapsed: 00:00:00.40
# Mc/sec: 4643.58
//
Query:       KOO22028.1  [L=179]
Description: hypothetical protein Ctob_003580 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
     0.0023   18.7   7.1     0.0028   18.4   7.1    1.2  1  NAM-associated  No apical meristem-associated C-terminal doma


Domain annotation for each model (and alignments):
>> NAM-associated  No apical meristem-associated C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.4   7.1   1.5e-07    0.0028      30     121 ..      14     112 ..       3     159 .. 0.59

  Alignments for each domain:
  == domain 1  score: 18.4 bits;  conditional E-value: 1.5e-07
  NAM-associated  30 kpkssassspatsssestdeedssesssesseesaadsestsssrlkRPiGkkk.aKekrkeaskdeealeklasaqkkiakkskekkeeae... 120
                     +p+ s++++p+++++  ++  +s++ +++ s+e  + + s++++++kRP+G    aK k+k  + d+++++   +++++ ++++ +kk +++   
      KOO22028.1  14 SPSASDDAEPTSTDA--DP--ASTTLATSPSSEPVL-QASKKQGSTKRPKGAIDrAKGKQK--AVDKKKMDLAKREKTAEGMAELQKKANETlak 101
                     233333333333333..22..222222222222223.3445557899***97554999999..55556666665555555555555543322233 PP

  NAM-associated 121 ..........l 121
                               +
      KOO22028.1 102 plsafmlfgfS 112
                     55555555551 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (179 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1004  (0.0559987); expected 358.6 (0.02)
Passed bias filter:                      413  (0.0230353); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.21s 00:00:00.60 Elapsed: 00:00:00.35
# Mc/sec: 1513.55
//
Query:       KOO22029.1  [L=213]
Description: fumarylacetoacetate hydrolase domain-containing protein 2a-like protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    6.8e-59  199.2   0.0    7.5e-59  199.0   0.0    1.0  1  FAA_hydrolase  Fumarylacetoacetate (FAA) hydrolase family


Domain annotation for each model (and alignments):
>> FAA_hydrolase  Fumarylacetoacetate (FAA) hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  199.0   0.0   4.2e-63   7.5e-59       8     218 .]       2     206 ..       1     206 [. 0.95

  Alignments for each domain:
  == domain 1  score: 199.0 bits;  conditional E-value: 4.2e-63
                    E--SHHHHHTTT.-SS-EEEEEEGGGE.EETTE..EE-TTSSSS-EE.......EEEEEEEESS-B--T--HHHHHTTEEEEEEEEEEE-SBGGG- CS
  FAA_hydrolase   8 nyaehvreagkaaeeppdrhiplepvfflkrasslvgpgdpirrPag.sekldyEvELavvigkplrevlsveeAedaiaGytllnDvsaRdlqae 102
                    ny +h++e +    + p+     epv+f k ass+v  g+p+++ +  +++ld+E+ELa++ig+  r++ + e+  d+iaG+ ++ DvsaRd+q++
     KOO22029.1   2 NYHDHCTEQN---FPIPK-----EPVIFSKFASSIVSNGEPLPLDEElTQELDFEAELAIIIGRTGRHI-PKERGLDHIAGWSVAHDVSARDWQMK 88 
                    9999999964...56666.....999****************999998999******************.9***********************99 PP

                    --.HHHHHHTGGGEEEEEE-B--B-.STT--...-SS-EEEEEETTEEEEEEEGGGTTTSHHHHHHHHHHHH-B-TT-EEEEEES.......S--E CS
  FAA_hydrolase 103 ekaplgwflgksfdtftpiGpwivtpdeled...pedlelrlrvngeevqdsntkdmifspaeliahlsagltLepGdliltGTpsgvgaeeeslk 195
                    +    +w+lgk +d+f+piGp ivt+de ++    ++l + +++nge vq+snt+++if+pa+++a +s+++tL+pGd+i++GTp gvg  ++++ 
     KOO22029.1  89 KN-GGQWLLGKTIDGFAPIGPSIVTRDEGAPfldAGNLGVHTTLNGEIVQKSNTRELIFKPADIVAFVSRFVTLKPGDMIFSGTPGGVGIFRKPPM 183
                    99.77*************************977677*****************************************************99***** PP

                    E--TT-EEEEEETTTEEEEEEE. CS
  FAA_hydrolase 196 flkdgDeveveieglGelrnrVa 218
                    flk gDev+v+i+glG+l+nrVa
     KOO22029.1 184 FLKGGDEVVVHIDGLGSLTNRVA 206
                    *********************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (213 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       196  (0.010932); expected 358.6 (0.02)
Passed bias filter:                      194  (0.0108205); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.26s 00:00:00.65 Elapsed: 00:00:00.41
# Mc/sec: 1568.46
//
Query:       KOO22030.1  [L=34]
Description: hypothetical protein Ctob_003588 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (34 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       295  (0.0164538); expected 358.6 (0.02)
Passed bias filter:                      107  (0.00596798); expected 358.6 (0.02)
Passed Vit filter:                         6  (0.000334653); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.24s 00:00:00.54 Elapsed: 00:00:00.38
# Mc/sec: 270.28
//
Query:       KOO22031.1  [L=258]
Description: multicatalytic endopeptidase complex alpha subunit-like protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.3e-49  167.4   0.1    3.4e-49  166.9   0.1    1.2  1  Proteasome      Proteasome subunit
    2.4e-15   55.9   0.1    3.9e-15   55.2   0.1    1.4  1  Proteasome_A_N  Proteasome subunit A N-terminal signature


Domain annotation for each model (and alignments):
>> Proteasome  Proteasome subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  166.9   0.1   3.8e-53   3.4e-49       3     190 .]      35     225 ..      33     225 .. 0.96

  Alignments for each domain:
  == domain 1  score: 166.9 bits;  conditional E-value: 3.8e-53
                 HS-EEEEEEETTEEEEEEEEEEEETTEEEESSSSTSEEEEETTEEEEEEESHHHHHHHHHHHHHHHHHHHHHHSSGTCHHHHHHHHHHHHHHHHHHCTT CS
  Proteasome   3 kGttvvGikgkdgvvlaadkratagskllskstveKifkiddhigvafaGlaaDartlvrraraeaqlyrlrygrpipverlvarvaaklqaytqrsgr 101
                  G t+vG++g d +v+ ++++++  +kl+++++v+ +++i+++ig++++G++aDar  v+r+r+ea+++++++g++ipv +l++r+a+++q+ytq++++
  KOO22031.1  35 SGLTSVGVRGADSAVVLTQRKVP--DKLHDPESVTNMYHITENIGLVMTGMVADARSKVQRLRSEAAEFKFNNGYDIPVGYLAKRAADLAQVYTQHASM 131
                 588********************..************************************************************************** PP

                 TTTSEEEEEEEEETTTE...EEEEEEETTSEEEEESSEEEESTTHHHHHHHHHHHH....STTBSHHHHHHHHHHHHHHHHHHBTTSCSSEEEEEE CS
  Proteasome 102 rpfgvslliagvdeegg...peLyqidpsGsyieekdavaiGsgseaaktalekey....kedltleeavelavkalkealerdklsgknievavi 190
                 rp+g++++i+g+d eg+   p+Ly++dp+G y+++k a+++G+++++a ++lek+y    ++ l+ +++v+la+ +l+ +l  d l+ + +e +v+
  KOO22031.1 132 RPLGIAMIIVGIDVEGEnkiPQLYRCDPAGYYVGYK-ATSAGQKEQEANNFLEKRYktdpNPALSYDDTVQLALACLQTVLGSD-LKASDVEACVV 225
                 *************8774445***************8.*****99************9988889******************977.99999999886 PP

>> Proteasome_A_N  Proteasome subunit A N-terminal signature
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.2   0.1   4.4e-19   3.9e-15       1      23 []       9      31 ..       9      31 .. 0.99

  Alignments for each domain:
  == domain 1  score: 55.2 bits;  conditional E-value: 4.4e-19
  Proteasome_A_N  1 YDrslttFSPdGRLfQVEYAmkA 23
                    YDr++t+FSP+GRL+QVEYA+kA
      KOO22031.1  9 YDRHITIFSPEGRLYQVEYAFKA 31
                    **********************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (258 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       510  (0.0284455); expected 358.6 (0.02)
Passed bias filter:                      448  (0.0249875); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.45u 0.24s 00:00:00.69 Elapsed: 00:00:00.41
# Mc/sec: 1869.55
//
Query:       KOO22032.1  [L=308]
Description: tubulin polyglutamylase ttll6-like protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.6e-51  175.2   0.0    2.2e-51  174.7   0.0    1.1  1  TTL              Tubulin-tyrosine ligase family
    0.00056   19.5   0.0    0.00086   18.9   0.0    1.2  1  CPSase_L_D2      Carbamoyl-phosphate synthase L chain, ATP bi
      0.002   17.4   0.0      0.012   14.8   0.0    2.0  2  ATPgrasp_ST      Sugar-transfer associated ATP-grasp
     0.0024   17.2   0.0     0.0076   15.5   0.0    1.9  2  ATPgrasp_YheCD   YheC/D like ATP-grasp
     0.0095   15.5   0.0      0.017   14.7   0.0    1.5  1  RimK             RimK-like ATP-grasp domain
  ------ inclusion threshold ------
      0.032   14.3   0.0        0.1   12.7   0.0    1.7  2  ATP-grasp_3      ATP-grasp domain
      0.052   13.1   0.0      0.077   12.6   0.0    1.3  1  ATP-grasp        ATP-grasp domain
      0.068   12.8   0.0       0.15   11.7   0.0    1.5  1  ATP-grasp_4      ATP-grasp domain
      0.086   12.4   0.0       0.14   11.7   0.0    1.2  1  Dala_Dala_lig_C  D-ala D-ala ligase C-terminus
       0.19   11.1   0.0       0.33   10.3   0.0    1.3  1  GSH-S_ATP        Prokaryotic glutathione synthetase, ATP-gras


Domain annotation for each model (and alignments):
>> TTL  Tubulin-tyrosine ligase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  174.7   0.0   1.2e-54   2.2e-51       8     252 ..      32     301 ..      24     303 .. 0.90

  Alignments for each domain:
  == domain 1  score: 174.7 bits;  conditional E-value: 1.2e-54
                 -SS-SSS--EEEE--------------------..-------TTHHHHHHHTTTS--S-B----SS---XX------BSSTHHHHHHHH..SSS-E... CS
         TTL   8 dqllnhfpnsseitrkdllvknlkrtkkklekklkflprtfvlpadlaefveeaekeesntwIvKpsasarGkgirvfnkledikkivsqsqkepl... 103
                  q+lnhf +++ i+rk+  +++l+r+   + + ++f+p +++lp+d+ae+ +  + ++  ++IvKps +++G+gi + ++ e+++++  ++q++++   
  KOO22032.1  32 LQKLNHFVGMTLICRKASAASVLNRNLRFSAQAFDFFPASWTLPKDQAELTRLMKAHKPPVLIVKPSKGSQGAGISICRSHEELQHV--MQQNGRWaeg 128
                 79***********************************************************************************65..5555554445 PP

                 EEEB--SSB--BTTEEEEEEEEEEE-..TT-XXXXXXXXXXXXXXXXXX...................XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
         TTL 104 vvqkYierPLLidgrKFDlRlyvlvtsvnpLrvYvYkegllRfasvkYsp.................svsdlddlevHLTNysiqkkskslneesnekk 185
                 v+q Yi+rPLL++g KFDlRlyvlvts  pLr+ +Y++gl+R++++kY+                  ++s  d +  HLTNy+i+k+++     ++  k
  KOO22032.1 129 VAQMYIDRPLLLEGYKFDLRLYVLVTSCSPLRIHIYRDGLARLCTEKYQVvssgeqldltaaagiaaATSASDWRKRHLTNYAINKQHEDFTAGVDGAK 227
                 *************************************************999**************8888888999***********777777777777 PP

                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX........XXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
         TTL 186 gkkwslqelekyleevrkeeiweeiesiiiktilaae.......veasrlnvqrlkncfelyGvDilidenlkp 252
                 ++   +++  ++++ ++ + +w +  ++i kt++a +       ++  +++ +   +cfel+G+D+lid+   p
  KOO22032.1 228 RRLGHVFDTISREAGFDVDALWGDCQQLIVKTLIAVQpdlahayASCRPSHDAHPFSCFELLGFDLLIDQVRSP 301
                 777777777777777**********************99988744444455566779************98776 PP

>> CPSase_L_D2  Carbamoyl-phosphate synthase L chain, ATP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.9   0.0   4.8e-07   0.00086      22      89 ..      73     138 ..      59     145 .. 0.86

  Alignments for each domain:
  == domain 1  score: 18.9 bits;  conditional E-value: 4.8e-07
                  SSBSSHHHHHHHHHHH-SSE.EEEETTCCTTTTEEEESSHHHHHHHHHHHHHHHHHHHSTS-EEEEE-- CS
  CPSase_L_D2  22 apvetleealaiakeigyPv.iikaafglGGkGmrvarneeelaelvkkalaeakaafgnkqvlveksl 89 
                  +  +++ e +++ k ++ Pv i+k++ g  G G  ++r++eel++++++  + a+   g +q+++++ l
   KOO22032.1  73 TLPKDQAELTRLMKAHKPPVlIVKPSKGSQGAGISICRSHEELQHVMQQNGRWAE---GVAQMYIDRPL 138
                  556788899999999999*9457***************************99997...99*****9954 PP

>> ATPgrasp_ST  Sugar-transfer associated ATP-grasp
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.0   6.9e-06     0.012      48      90 ..      77     120 ..      49     130 .. 0.80
   2 ?   -0.1   0.0      0.24   4.4e+02     237     259 ..     282     303 ..     265     303 .. 0.84

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 6.9e-06
  ATPgrasp_ST  48 eiseleafvkeleeg.vviKpakgsgGkGilviteredqdylks 90 
                  + +el  ++k +++  +++Kp kgs G Gi+++ ++e+ + + +
   KOO22032.1  77 DQAELTRLMKAHKPPvLIVKPSKGSQGAGISICRSHEELQHVMQ 120
                  55677778888877779****************99887555444 PP

  == domain 2  score: -0.1 bits;  conditional E-value: 0.24
  ATPgrasp_ST 237 eklpglgylGwDivldeekgpll 259
                    + +  +lG D+ +d+ + pl+
   KOO22032.1 282 P-FSCFELLGFDLLIDQVRSPLM 303
                  4.7788999********999986 PP

>> ATPgrasp_YheCD  YheC/D like ATP-grasp
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.0   4.2e-06    0.0076      19      81 ..      58     123 ..      44     151 .. 0.77
   2 ?   -2.2   0.0       1.1     2e+03     207     215 ..     289     297 ..     277     301 .. 0.80

  Alignments for each domain:
  == domain 1  score: 15.5 bits;  conditional E-value: 4.2e-06
  ATPgrasp_YheCD  19 LskdpelrpyLPetelle.sledleemlekyks..vylKpanGskGkgilriekeekellllsrek 81 
                     L+ + ++ ++ P++  l+ ++ +l ++++ +k   +++Kp++Gs+G gi   +++e+ + ++++++
      KOO22032.1  58 LRFSAQAFDFFPASWTLPkDQAELTRLMKAHKPpvLIVKPSKGSQGAGISICRSHEELQHVMQQNG 123
                     5666666777787777653788999999998744499************99999555544444443 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 1.1
  ATPgrasp_YheCD 207 lGlDlgidk 215
                     lG+Dl id+
      KOO22032.1 289 LGFDLLIDQ 297
                     8*******8 PP

>> RimK  RimK-like ATP-grasp domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   0.0   9.7e-06     0.017      33      84 ..      84     136 ..      68     198 .. 0.81

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 9.7e-06
                 HHHTT-.-SSE.EEEE-TTTT--EEEEE-SHHHHHHHHHH..GGG--EEEEE--S CS
        RimK  33 liekiklrfPv.vvKsvegsqGikvvlakkeqklkqvlea..lkeailvqeyiee 84 
                 l++    + Pv +vK ++gsqG ++ +++ +++l+ v++     ++ + q yi+ 
  KOO22032.1  84 LMKAH--KPPVlIVKPSKGSQGAGISICRSHEELQHVMQQngRWAEGVAQMYIDR 136
                 44433..4564389***********************987545555588888875 PP

>> ATP-grasp_3  ATP-grasp domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.0       1.5   2.8e+03     128     159 ..      29      61 ..      18      63 .. 0.78
   2 ?   12.7   0.0   5.6e-05       0.1      27      71 ..      86     135 ..      66     137 .. 0.79

  Alignments for each domain:
  == domain 1  score: -1.8 bits;  conditional E-value: 1.5
                  HTTSTT--EEEEEEEEESS..SEEEEEEESS-- CS
  ATP-grasp_3 128 vekleglaGyvGvDlvlkd.eepyviEvNPRlt 159
                  +  l++l+ +vG  l+ ++ +   v++ N R+ 
   KOO22032.1  29 LGPLQKLNHFVGMTLICRKaSAASVLNRNLRFS 61 
                  556889999999999988868888888888876 PP

  == domain 2  score: 12.7 bits;  conditional E-value: 5.6e-05
                  SS--SSSEEEEESS-------B--SS--TTE............EEEE--- CS
  ATP-grasp_3  27 leeeekklvvKprdGaggesvrvveekeeaeaaieeve.....lvqefie 71 
                   + ++  l+vKp++G+ g ++++ + +ee++  ++++      ++q +i+
   KOO22032.1  86 KAHKPPVLIVKPSKGSQGAGISICRSHEELQHVMQQNGrwaegVAQMYID 135
                  34446679***********************9999887888999999985 PP

>> ATP-grasp  ATP-grasp domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   4.3e-05     0.077      10      62 ..      71     128 ..      63     191 .. 0.83

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 4.3e-05
                 EEEEECCHHHHHHHHHHH-SCEEEEESSS-CTTTTEEEECTCCGHHCHHHHC.....G CS
   ATP-grasp  10 rflaveskeeleeaaeelglpvvvKarrlgydGkGqsvvrseedleqaleal.....k 62 
                 ++++ ++++el +++++ + pv++ ++  g+ G G s++rs+e+l++++++      +
  KOO22032.1  71 SWTLPKDQAELTRLMKAHKPPVLIVKPSKGSQGAGISICRSHEELQHVMQQNgrwaeG 128
                 56666788899999999999998877**********************9987555541 PP

>> ATP-grasp_4  ATP-grasp domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   8.3e-05      0.15       5      49 ..      93     133 ..      89     143 .. 0.74

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 8.3e-05
  ATP-grasp_4   5 vviKPsvgffSlGVykinneeewkaavaaieeeleqakeeykeev 49 
                  +++KPs+g+   G+++++++ee+++++++  +    ++e +++ +
   KOO22032.1  93 LIVKPSKGSQGAGISICRSHEELQHVMQQNGR----WAEGVAQMY 133
                  599**********************8877554....444444333 PP

>> Dala_Dala_lig_C  D-ala D-ala ligase C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   7.7e-05      0.14      29      73 ..      82     127 ..      62     130 .. 0.74

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 7.7e-05
                      HHHHHHC-SS.EEEEESSSSTTTTEEEESSGGGHHHHHHHHHTT-S CS
  Dala_Dala_lig_C  29 ekveeelgyp.vfVKpareGSSvGvskveseeelkeaieeafkyde 73 
                      ++++++ + p ++VKp++     G+s ++s eel++ +++  ++ e
       KOO22032.1  82 TRLMKAHKPPvLIVKPSKGSQGAGISICRSHEELQHVMQQNGRWAE 127
                      3444444445158****99999***************999888766 PP

>> GSH-S_ATP  Prokaryotic glutathione synthetase, ATP-grasp domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.0   0.00018      0.33      11      79 ..      68     135 ..      59     159 .. 0.76

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.00018
                 CS--EEEES-HHHHHHHHHHHSS..EEEEESS--TTTT-EEE-TT-TTHHHHHHHHTTTTTS-EEEEE--G CS
   GSH-S_ATP  11 lipktlvskdkeeirafleeqgd..vilKPldgkgGegvfrvkksdpnlksilellteegkepviaqrylp 79 
                 + ++  + kd++e+++++++++   +i+KP +g+ G+g+  + +s+++l+ ++++  +  +   +aq y++
  KOO22032.1  68 FPASWTLPKDQAELTRLMKAHKPpvLIVKPSKGSQGAGISIC-RSHEELQHVMQQNGRWAE--GVAQMYID 135
                 4455567789999****9999877799***********9755.556778777766554443..67788776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (308 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       391  (0.0218082); expected 358.6 (0.02)
Passed bias filter:                      371  (0.0206927); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.46u 0.27s 00:00:00.73 Elapsed: 00:00:00.42
# Mc/sec: 2215.99
//
Query:       KOO22033.1  [L=179]
Description: hypothetical protein Ctob_002953 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.055   12.8   0.0        0.3   10.4   0.0    1.9  2  Tic22     Tic22-like family


Domain annotation for each model (and alignments):
>> Tic22  Tic22-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.0   1.7e-05       0.3      50      86 ..       9      45 ..       3     102 .. 0.81
   2 ?    0.2   0.0     0.023   4.1e+02     173     189 ..     130     146 ..     128     150 .. 0.83

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 1.7e-05
       Tic22 50 LssdevaktLaGvpvytvsnsnnefvlvsdpdgeksi 86
                L + ev+++L+ vpv++++n  +++v   d++++++ 
  KOO22033.1  9 LVTLEVVDKLNAVPVFSIVNGAEQMVQTPDKESGNVA 45
                66789*********************99999888654 PP

  == domain 2  score: 0.2 bits;  conditional E-value: 0.023
       Tic22 173 kenkryiPvffrkedie 189
                 +e   + P+ffr++d++
  KOO22033.1 130 EEESTMLPLFFRRSDLH 146
                 5677899********96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (179 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       277  (0.0154498); expected 358.6 (0.02)
Passed bias filter:                      229  (0.0127726); expected 358.6 (0.02)
Passed Vit filter:                        12  (0.000669307); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.25s 00:00:00.62 Elapsed: 00:00:00.39
# Mc/sec: 1381.01
//
Query:       KOO22034.1  [L=276]
Description: hypothetical protein Ctob_002950 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.8e-24   86.6   0.0    2.2e-24   86.3   0.0    1.1  1  Ala_racemase_N  Alanine racemase, N-terminal domain


Domain annotation for each model (and alignments):
>> Ala_racemase_N  Alanine racemase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   86.3   0.0   1.2e-28   2.2e-24       5     218 ..      38     264 ..      34     265 .. 0.81

  Alignments for each domain:
  == domain 1  score: 86.3 bits;  conditional E-value: 1.2e-28
                     HHHHHHHHHHHHS.CT...TSEEEEE-HHHHHTTHHHHHHHHHHHTTESEEEESSHHHHH................HHHHTTSCSEEEEESCSTG CS
  Ala_racemase_N   5 alrhNlrrlrala.gp...gaklmavvKanayghgavevaralaeggadgfgvatleEal................elreagitapilvlegfsp 79 
                      + hNl+ +ra++ ++    a l+av+K+  +++++++ a+   ++g + fg+++++E +                +            l+  + 
      KOO22034.1  38 DVVHNLKSVRARMaASgpaTATLVAVSKT--KPVELLREAY---DAGQRDFGENYVQEVIdkapllpgdirwhfigH------------LQSNKV 115
                     578**********633789888*******..9999988888...5569************77766666333333333............333455 PP

                     GGHHHHHHTTEEEEESSHHHHHHHHHHHHH...TTS-EEEEEEBESSSS..SSSBSCHHHHHHHHHHHH.TTTEEEEEEE-S-SSTTSTSHHHHH CS
  Ala_racemase_N  80 eelaalaeydltvtvdsleqlealaaaare...agkplrvhlkidtgmg..RlGftpeeleellealaa.lpglrleglmtHfasadepdeetea 168
                     ++l ++ +   ++tvd+l+ +++l++ a++    +++lrv+++++t+++  ++G++p+++++l++a+++ +  l+l+glm +   ++e+    + 
      KOO22034.1 116 KDLLKVPNLYAVHTVDTLKLAQELQKRAAAlrpPEQRLRVFVQVNTSGEesKSGCAPADCPALCRAVRSsCAALDLIGLMCIGKYSAEEG-GSDV 209
                     888888889****************999999999************9999******************94466*************9966.6666 PP

                     HHHHHHHHHHHH....HHTT.GGGSEEEEESHHHHHHSG.GGTTEEEESGGGGT-S CS
  Ala_racemase_N 169 qlarfeealeel....ekag.lrppvvslanSaaillaa.ahfdmvRpGialyGls 218
                     ++a++++++ ++       g ++   +s+++S+++  a  a   +vR+G+ ++G++
      KOO22034.1 210 DFACLRQCRVAVagdlG-LGtPEELAMSMGMSHDFEDALtAGASHVRVGSTIFGAR 264
                     88888777666632213.45566669************6366************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (276 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       386  (0.0215294); expected 358.6 (0.02)
Passed bias filter:                      313  (0.0174578); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.27s 00:00:00.69 Elapsed: 00:00:00.41
# Mc/sec: 2010.96
//
Query:       KOO22035.1  [L=424]
Description: hypothetical protein Ctob_002951 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.7e-17   62.6   8.2      9e-17   62.0   8.2    1.3  1  Senescence  Senescence-associated protein


Domain annotation for each model (and alignments):
>> Senescence  Senescence-associated protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.0   8.2     5e-21     9e-17       3     164 ..     143     294 ..     134     310 .. 0.93

  Alignments for each domain:
  == domain 1  score: 62.0 bits;  conditional E-value: 5e-21
  Senescence   3 kgadvisrgivktsnllakgiqkgaeyyiskskpsekPlefsprtrkalrkvrkvsgqaakvsaktvggvgdaagrvgaavaksvkkkgtksseeeskp 101
                  g++ ++r i +++ +++ g+  + + ++++ +p e+ + + p++ + + + r+v ++a  ++  + +gv  +ag++g+a+a++++            +
  KOO22035.1 143 IGGQAAARCIKSGAAVITDGLVCALSEIRTHVQPDEREAFVAPEVIQVVNTTRTVANAALRFTGMVGSGVAAVAGAIGTAAAQHLAT----------NQ 231
                 57888999999999999999999999999999****************************************************664..........67 PP

  Senescence 102 gksekktaagevlnasldafstvldgleeaakqllsatsdattkvvehkYGeeAgevtrdvle 164
                 ++ ++ +a + +++as+ a+ t+++ le++a ++++++++ + ++v+hk+G+eAg+ ++ +  
  KOO22035.1 232 PDTPTVAALKVIGGASISAICTIGQELEHSAVEIGKTSGAVVEAAVRHKWGDEAGQCSHAACT 294
                 788999**************************************************9997765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (424 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       701  (0.0390987); expected 358.6 (0.02)
Passed bias filter:                      397  (0.0221429); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.24s 00:00:00.72 Elapsed: 00:00:00.40
# Mc/sec: 3195.45
//
Query:       KOO22036.1  [L=119]
Description: acyl carrier protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    7.3e-16   58.3   0.2    1.1e-15   57.8   0.2    1.3  1  PP-binding       Phosphopantetheine attachment site
    0.00031   20.9   0.6     0.0005   20.2   0.6    1.5  1  PP-binding_2     Acyl-carrier
  ------ inclusion threshold ------
       0.64    9.8   0.0       0.64    9.8   0.0    3.4  3  Ribosomal_L12_N  Ribosomal protein L7/L12 dimerisation domain


Domain annotation for each model (and alignments):
>> PP-binding  Phosphopantetheine attachment site
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.8   0.2   1.8e-19   1.1e-15       1      66 [.      48     114 ..      48     115 .. 0.94

  Alignments for each domain:
  == domain 1  score: 57.8 bits;  conditional E-value: 1.8e-19
  PP-binding   1 eklrelvaevlgvpleeidpdtdlf.dlGlDSllavellaaleeefgveiplsdlfehptlaelaay 66 
                 +k++ ++ae+lgv+l  + p +++  dlG DSl+avel++a+ee+f++eip+++  + +t+a+ +++
  KOO22036.1  48 DKVKGIIAEQLGVELNTVLPGASFTeDLGADSLDAVELIMAIEEAFDIEIPDEEAETMTTPADCVKA 114
                 689**************99******77****************************99****997765 PP

>> PP-binding_2  Acyl-carrier
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.2   0.6   8.4e-08    0.0005      42      76 ..      73     107 ..      36     118 .. 0.80

  Alignments for each domain:
  == domain 1  score: 20.2 bits;  conditional E-value: 8.4e-08
  PP-binding_2  42 edrlwdgldtvefvedveelfdvivsdevadnfet 76 
                   ed   d+ld+ve+++ +ee fd+ ++de a+ + t
    KOO22036.1  73 EDLGADSLDAVELIMAIEEAFDIEIPDEEAETMTT 107
                   556679**********************9987766 PP

>> Ribosomal_L12_N  Ribosomal protein L7/L12 dimerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   5.8      0.41   2.5e+03      30      47 ..      14      32 ..      13      36 .. 0.68
   2 ?   -1.7   4.1       0.4   2.4e+03      32      41 ..      32      43 ..      29      49 .. 0.72
   3 ?    9.8   0.0   0.00011      0.64      15      31 ..      80      96 ..      80      98 .. 0.93

  Alignments for each domain:
  == domain 1  score: -1.7 bits;  conditional E-value: 0.41
                     HHHH.HHHHHH.HHHHHHH CS
  Ribosomal_L12_N 30 VsAA.APvavaaaaaaaaa 47
                     VsA  APv +++a a a a
       KOO22036.1 14 VSAFnAPVSAVGASAIARA 32
                     7888899998877333333 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 0.4
                     HH..HHHHHH.H CS
  Ribosomal_L12_N 32 AA..APvavaaa 41
                     AA  AP++va+a
       KOO22036.1 32 AAirAPAVVAMA 43
                     555799888866 PP

  == domain 3  score: 9.8 bits;  conditional E-value: 0.00011
                     HHHHHHHHHHHHHTTHH CS
  Ribosomal_L12_N 15 LElseLvkalEekFGVs 31
                     L+++eL+ a+Ee F+++
       KOO22036.1 80 LDAVELIMAIEEAFDIE 96
                     799************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (119 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       503  (0.0280551); expected 358.6 (0.02)
Passed bias filter:                      362  (0.0201908); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.38u 0.26s 00:00:00.64 Elapsed: 00:00:00.41
# Mc/sec: 874.98
//
Query:       KOO22037.1  [L=849]
Description: feminization 1-like a [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.9e-14   52.4   0.3    1.4e-13   51.2   0.1    1.8  1  Ank_2       Ankyrin repeats (3 copies)
    9.1e-12   45.3   0.3      3e-05   24.4   0.1    2.5  2  EF-hand_7   EF-hand domain pair
    1.9e-10   41.1   3.2    6.7e-07   29.7   0.4    2.7  2  Ank_4       Ankyrin repeats (many copies)
    4.6e-10   38.3   1.8      0.041   13.4   0.0    4.4  4  EF-hand_1   EF hand
    5.6e-09   36.1   0.7     0.0011   19.3   0.1    3.4  3  Ank         Ankyrin repeat
    5.7e-09   35.2   1.0       0.13   12.2   0.0    4.3  4  EF-hand_6   EF-hand domain
    4.6e-08   33.2   0.9    6.1e-05   23.2   0.1    2.9  2  Ank_5       Ankyrin repeats (many copies)
    3.4e-07   29.5   3.3       0.23   11.0   0.4    4.3  4  EF-hand_5   EF hand
    1.2e-05   25.1   1.3       0.17   11.7   0.2    4.6  5  EF-hand_8   EF-hand domain pair
    2.6e-05   24.3   0.6       0.38   11.5   0.2    3.9  3  Ank_3       Ankyrin repeat
     0.0071   16.2   2.6        2.6    8.0   0.4    2.6  2  EF-hand_10  EF hand


Domain annotation for each model (and alignments):
>> Ank_2  Ankyrin repeats (3 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.2   0.1   8.8e-17   1.4e-13       3      78 ..     747     833 ..     745     838 .. 0.87

  Alignments for each domain:
  == domain 1  score: 51.2 bits;  conditional E-value: 8.8e-17
       Ank_2   3 lAakngnlelvklLl.egadpn..k.ngktaLhyAakngnleivklLleh.......adndgrtpLhyAarsghleivklLlekgad 78 
                 +A+++g++ +v+ L+  ga+++  +  +++aLh+A  +g+l+iv+ Ll          d  g+t+L++A+  ghl++++lL+e ga+
  KOO22037.1 747 HACQQGHFATVQALVwRGARVGvcDgRNQNALHIASFEGYLDIVRVLLGTedveldaRDACGHTALMLASLRGHLNCMRLLIEAGAS 833
                 79999*9*********999999854789********************7446675645588*********99**********99885 PP

>> EF-hand_7  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.5   0.0   1.3e-06    0.0021       3      71 .]      75     143 ..      73     143 .. 0.80
   2 !   24.4   0.1   1.9e-08     3e-05      12      70 ..     211     268 ..     210     269 .. 0.91

  Alignments for each domain:
  == domain 1  score: 18.5 bits;  conditional E-value: 1.3e-06
   EF-hand_7   3 klkea.FkelDtdgdgyldkee.llrllrkifqgagegsklsdeelellfkefDtdkdGvisfdEFlklyr 71 
                 +l+ea Fk  D dg+g l k e + ++ r +   ++ + +l  ++  +lf   D+++dG i  dE++++++
  KOO22037.1  75 RLCEAeFKVQDADGNGTLGKIEaYTSVER-MCVRFHLAMPLA-DKCAQLFALCDKSGDGLIQVDEYQRYFK 143
                 678888**************998885444.333347888855.5888888888**************9985 PP

  == domain 2  score: 24.4 bits;  conditional E-value: 1.9e-08
   EF-hand_7  12 Dtdgdgyldkee.llr...llrkifqgagegsklsdeelellfkefDtdkdGvisfdEFlkly 70 
                 D +gdg ld+ e + +   +++++    + + + sde  e+lf   D+++dG i  dEF++++
  KOO22037.1 211 DANGDGTLDRGEtIACvgkVCKRF----ELAMP-SDERCEELFARSDSSGDGFIQIDEFYTFF 268
                 99**********666588888887....99999.999***********************997 PP

>> Ank_4  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.8   0.1   2.5e-07   0.00041       5      55 .]     745     794 ..     741     794 .. 0.95
   2 !   29.7   0.4   4.1e-10   6.7e-07       4      55 .]     777     828 ..     776     828 .. 0.97

  Alignments for each domain:
  == domain 1  score: 20.8 bits;  conditional E-value: 2.5e-07
       Ank_4   5 LhyaaisgrlelvrlLlekgadinaqdnrsGetalhiAakrgnveilklLl 55 
                 + +a+++g++ +v+ L+ +ga +  + +++ ++alhiA   g+++i++ Ll
  KOO22037.1 745 MLHACQQGHFATVQALVWRGARVGVC-DGRNQNALHIASFEGYLDIVRVLL 794
                 568999*******************9.**********************97 PP

  == domain 2  score: 29.7 bits;  conditional E-value: 4.1e-10
       Ank_4   4 aLhyaaisgrlelvrlLlek.gadinaqdnrsGetalhiAakrgnveilklLl 55 
                 aLh a  +g l++vr Ll + +++++a+ +++G tal  A +rg++++ +lL+
  KOO22037.1 777 ALHIASFEGYLDIVRVLLGTeDVELDAR-DACGHTALMLASLRGHLNCMRLLI 828
                 79******************99******.**********************98 PP

>> EF-hand_1  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.5   0.0     0.036        59       5      18 ..      80      93 ..      76      96 .. 0.83
   2 !   13.4   0.0   2.5e-05     0.041       3      27 ..     119     143 ..     117     145 .. 0.90
   3 ?    4.1   0.0     0.024        39      10      21 ..     211     222 ..     208     227 .. 0.92
   4 !   13.3   0.1   2.9e-05     0.047       2      26 ..     244     268 ..     243     271 .. 0.90

  Alignments for each domain:
  == domain 1  score: 3.5 bits;  conditional E-value: 0.036
                HHHHHTTTSSSEEE CS
   EF-hand_1  5 iFrefDkDgdGkId 18
                 F++ D Dg+G++ 
  KOO22037.1 80 EFKVQDADGNGTLG 93
                59999******985 PP

  == domain 2  score: 13.4 bits;  conditional E-value: 2.5e-05
                 HHHHHHHTTTSSSEEEHHHHHHHHH CS
   EF-hand_1   3 keiFrefDkDgdGkIdfeEfkellk 27 
                  ++F++ Dk gdG I  +E+++++k
  KOO22037.1 119 AQLFALCDKSGDGLIQVDEYQRYFK 143
                 579******************9987 PP

  == domain 3  score: 4.1 bits;  conditional E-value: 0.024
                 TTTSSSEEEHHH CS
   EF-hand_1  10 DkDgdGkIdfeE 21 
                 D +gdG++d+ E
  KOO22037.1 211 DANGDGTLDRGE 222
                 99*******877 PP

  == domain 4  score: 13.3 bits;  conditional E-value: 2.9e-05
                 HHHHHHHHTTTSSSEEEHHHHHHHH CS
   EF-hand_1   2 lkeiFrefDkDgdGkIdfeEfkell 26 
                 ++e+F+  D  gdG+I ++Ef +++
  KOO22037.1 244 CEELFARSDSSGDGFIQIDEFYTFF 268
                 789******************8876 PP

>> Ank  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.4   0.0       1.2   1.9e+03       6      25 ..     746     765 ..     745     771 .. 0.83
   2 !   12.6   0.0   8.8e-05      0.14       5      31 ..     777     805 ..     774     806 .. 0.85
   3 !   19.3   0.1   6.8e-07    0.0011       2      26 ..     808     833 ..     807     838 .. 0.91

  Alignments for each domain:
  == domain 1  score: -0.4 bits;  conditional E-value: 1.2
                 HHHHHHHTTHHHHHHHH.TTT CS
         Ank   6 LHlAatngkkriiklLL.hGA 25 
                 LH  ++ g+   +++L+ +GA
  KOO22037.1 746 LHA-CQQGHFATVQALVwRGA 765
                 675.9899999*****99898 PP

  == domain 2  score: 12.6 bits;  conditional E-value: 8.8e-05
                 HHHHHHHHTTHHHHHHHHTT...TSTTCBT CS
         Ank   5 PLHlAatngkkriiklLLhG...Anlnald 31 
                 +LH+A+ +g ++i++ LL G    +l+a+d
  KOO22037.1 777 ALHIASFEGYLDIVRVLL-GtedVELDARD 805
                 9*****9999********.64447799998 PP

  == domain 3  score: 19.3 bits;  conditional E-value: 6.8e-07
                 SBBHHHHHHHHTTHHHHHHHH.TTTS CS
         Ank   2 GnTPLHlAatngkkriiklLL.hGAn 26 
                 G+T+L+lA+ +g++++ +lL+  GA+
  KOO22037.1 808 GHTALMLASLRGHLNCMRLLIeAGAS 833
                 9********************88985 PP

>> EF-hand_6  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.4   0.0      0.25   4.1e+02       6      19 ..      81      94 ..      78      97 .. 0.84
   2 !   12.2   0.0   8.1e-05      0.13       4      27 ..     120     143 ..     117     146 .. 0.90
   3 ?    4.7   0.0     0.022        35      10      25 ..     211     226 ..     211     233 .. 0.86
   4 !   11.7   0.0   0.00012      0.19       3      26 ..     245     268 ..     243     276 .. 0.88

  Alignments for each domain:
  == domain 1  score: 1.4 bits;  conditional E-value: 0.25
   EF-hand_6  6 FklfDkdgdGkida 19
                Fk  D dg+G++ +
  KOO22037.1 81 FKVQDADGNGTLGK 94
                7888*******976 PP

  == domain 2  score: 12.2 bits;  conditional E-value: 8.1e-05
   EF-hand_6   4 eaFklfDkdgdGkidaeElrkalr 27 
                 ++F l Dk+gdG i  +E ++ ++
  KOO22037.1 120 QLFALCDKSGDGLIQVDEYQRYFK 143
                 68****************998876 PP

  == domain 3  score: 4.7 bits;  conditional E-value: 0.022
   EF-hand_6  10 DkdgdGkidaeElrka 25 
                 D +gdG++d+ E +++
  KOO22037.1 211 DANGDGTLDRGETIAC 226
                 89********997776 PP

  == domain 4  score: 11.7 bits;  conditional E-value: 0.00012
   EF-hand_6   3 reaFklfDkdgdGkidaeElrkal 26 
                 +e+F   D +gdG+i ++E+  ++
  KOO22037.1 245 EELFARSDSSGDGFIQIDEFYTFF 268
                 6899999*************9876 PP

>> Ank_5  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.2   0.1   3.7e-08   6.1e-05      13      53 ..     771     812 ..     760     812 .. 0.91
   2 !   17.1   0.2   3.1e-06     0.005       7      42 ..     799     834 ..     796     839 .. 0.83

  Alignments for each domain:
  == domain 1  score: 23.2 bits;  conditional E-value: 3.7e-08
       Ank_5  13 dgggntpLhvAakygaadvvrlLl.argadlnltdsrGltal 53 
                 dg+ +++Lh+A+  g++d+vr+Ll  + + l+++d++G tal
  KOO22037.1 771 DGRNQNALHIASFEGYLDIVRVLLgTEDVELDARDACGHTAL 812
                 67778***********************************97 PP

  == domain 2  score: 17.1 bits;  conditional E-value: 3.1e-06
       Ank_5   7 advnrldgggntpLhvAakygaadvvrlLlargadl 42 
                 + ++++d +g t+L++A+ +g+++++rlL++ ga+ 
  KOO22037.1 799 VELDARDACGHTALMLASLRGHLNCMRLLIEAGASD 834
                 66778888999*******************777765 PP

>> EF-hand_5  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.2   0.0      0.18     3e+02       5      20 ..      81      96 ..      78     101 .. 0.77
   2 !    6.4   0.0    0.0041       6.7       5      24 ..     122     142 ..     119     143 .. 0.83
   3 !    8.1   0.0    0.0012       1.9       9      20 ..     211     222 ..     211     227 .. 0.88
   4 !   11.0   0.4   0.00014      0.23       5      24 ..     248     267 ..     245     268 .. 0.84

  Alignments for each domain:
  == domain 1  score: 1.2 bits;  conditional E-value: 0.18
                HHHH-SS-SSCE-HHH CS
   EF-hand_5  5 FqaiDlNgDGkIskeE 20
                F+  D++g G++ k E
  KOO22037.1 81 FKVQDADGNGTLGKIE 96
                6777******997766 PP

  == domain 2  score: 6.4 bits;  conditional E-value: 0.0041
                 HHHH-SS-SSCE-HHHHHH.H CS
   EF-hand_5   5 FqaiDlNgDGkIskeELkt.l 24 
                 F   D+ gDG I ++E ++ +
  KOO22037.1 122 FALCDKSGDGLIQVDEYQRyF 142
                 66779***********99855 PP

  == domain 3  score: 8.1 bits;  conditional E-value: 0.0012
                 -SS-SSCE-HHH CS
   EF-hand_5   9 DlNgDGkIskeE 20 
                 D+NgDG++++ E
  KOO22037.1 211 DANGDGTLDRGE 222
                 9********988 PP

  == domain 4  score: 11.0 bits;  conditional E-value: 0.00014
                 HHHH-SS-SSCE-HHHHHHH CS
   EF-hand_5   5 FqaiDlNgDGkIskeELktl 24 
                 F + D  gDG+I ++E++t+
  KOO22037.1 248 FARSDSSGDGFIQIDEFYTF 267
                 6666889***********97 PP

>> EF-hand_8  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.5   0.0     0.019        31      28      50 ..      77      99 ..      77     104 .. 0.84
   2 ?    2.1   0.0      0.11   1.7e+02      25      51 ..     115     141 ..     103     143 .. 0.82
   3 ?    0.8   0.0      0.28   4.6e+02      36      52 ..     211     227 ..     209     229 .. 0.90
   4 !   11.7   0.2   0.00011      0.17      23      52 ..     239     268 ..     231     269 .. 0.88
   5 ?   -3.2   0.0       4.8   7.8e+03      28      41 ..     327     340 ..     325     341 .. 0.88

  Alignments for each domain:
  == domain 1  score: 4.5 bits;  conditional E-value: 0.019
   EF-hand_8 28 vdilfrefDtdgdGkisfeEFcv 50
                +++ f+  D dg+G++++ E + 
  KOO22037.1 77 CEAEFKVQDADGNGTLGKIEAYT 99
                78899************998665 PP

  == domain 2  score: 2.1 bits;  conditional E-value: 0.11
   EF-hand_8  25 eeevdilfrefDtdgdGkisfeEFcvl 51 
                 ++++  lf + D  gdG i  +E+  +
  KOO22037.1 115 ADKCAQLFALCDKSGDGLIQVDEYQRY 141
                 678889999*************98655 PP

  == domain 3  score: 0.8 bits;  conditional E-value: 0.28
   EF-hand_8  36 DtdgdGkisfeEFcvll 52 
                 D +gdG+++  E+++++
  KOO22037.1 211 DANGDGTLDRGETIACV 227
                 99*******99999886 PP

  == domain 4  score: 11.7 bits;  conditional E-value: 0.00011
   EF-hand_8  23 lseeevdilfrefDtdgdGkisfeEFcvll 52 
                  s+e +++lf + D  gdG i  +EF+ ++
  KOO22037.1 239 PSDERCEELFARSDSSGDGFIQIDEFYTFF 268
                 57788*********************9876 PP

  == domain 5  score: -3.2 bits;  conditional E-value: 4.8
   EF-hand_8  28 vdilfrefDtdgdG 41 
                 +d+l+ +f + g+G
  KOO22037.1 327 LDALVTAFPLAGSG 340
                 799*********99 PP

>> Ank_3  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.7   0.0      0.16   2.6e+02       5      22 ..     744     761 ..     741     767 .. 0.87
   2 ?    5.6   0.0     0.019        31       2      23 ..     774     795 ..     773     803 .. 0.85
   3 !   11.5   0.2   0.00023      0.38       1      27 [.     807     832 ..     807     834 .. 0.92

  Alignments for each domain:
  == domain 1  score: 2.7 bits;  conditional E-value: 0.16
       Ank_3   5 pLhlAarsgnleivkfLl 22 
                 ++ +A+ +g+++ v++L+
  KOO22037.1 744 AMLHACQQGHFATVQALV 761
                 6789*******9999996 PP

  == domain 2  score: 5.6 bits;  conditional E-value: 0.019
       Ank_3   2 GetpLhlAarsgnleivkfLle 23 
                 ++++Lh+A   g l+iv+ Ll 
  KOO22037.1 774 NQNALHIASFEGYLDIVRVLLG 795
                 689*****************97 PP

  == domain 3  score: 11.5 bits;  conditional E-value: 0.00023
       Ank_3   1 nGetpLhlAarsgnleivkfLlenkga 27 
                 +G t+L+lA + g+l+ +++L+e  ga
  KOO22037.1 807 CGHTALMLASLRGHLNCMRLLIE-AGA 832
                 699************99******.676 PP

>> EF-hand_10  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.6   0.1     0.002       3.3      25      48 ..     120     143 ..     114     145 .. 0.87
   2 !    8.0   0.4    0.0016       2.6      20      48 ..     241     269 ..     238     272 .. 0.87

  Alignments for each domain:
  == domain 1  score: 7.6 bits;  conditional E-value: 0.002
  EF-hand_10  25 kLFkkcDkSksgrLegeEieeFyk 48 
                 +LF  cDkS +g ++  E + ++k
  KOO22037.1 120 QLFALCDKSGDGLIQVDEYQRYFK 143
                 8************99999988876 PP

  == domain 2  score: 8.0 bits;  conditional E-value: 0.0016
  EF-hand_10  20 deYAekLFkkcDkSksgrLegeEieeFyk 48 
                 de  e+LF + D S +g+++  E+ +F+ 
  KOO22037.1 241 DERCEELFARSDSSGDGFIQIDEFYTFFC 269
                 666799******************99875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (849 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1448  (0.080763); expected 358.6 (0.02)
Passed bias filter:                      629  (0.0350828); expected 358.6 (0.02)
Passed Vit filter:                        64  (0.00356964); expected 17.9 (0.001)
Passed Fwd filter:                        21  (0.00117129); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.78u 0.28s 00:00:01.06 Elapsed: 00:00:00.42
# Mc/sec: 6009.25
//
Query:       KOO22038.1  [L=33]
Description: hypothetical protein Ctob_002945, partial [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (33 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       337  (0.0187964); expected 358.6 (0.02)
Passed bias filter:                      121  (0.00674884); expected 358.6 (0.02)
Passed Vit filter:                         7  (0.000390429); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.23s 00:00:00.52 Elapsed: 00:00:00.36
# Mc/sec: 274.70
//
Query:       KOO22039.1  [L=263]
Description: hypothetical protein Ctob_002944 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
        1.4   10.0  10.2        2.3    9.4   9.1    1.8  2  MRI         Modulator of retrovirus infection
        4.9    6.1   4.9        5.4    5.9   4.9    1.1  1  BAF1_ABF1   BAF1 / ABF1 chromatin reorganising factor


Domain annotation for each model (and alignments):
>> MRI  Modulator of retrovirus infection
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   9.1   0.00025       2.3      13      84 ..     143     214 ..     139     226 .. 0.78
   2 ?    0.3   0.1      0.17   1.5e+03      54      82 ..     210     238 ..     197     241 .. 0.71

  Alignments for each domain:
  == domain 1  score: 9.4 bits;  conditional E-value: 0.00025
         MRI  13 vALgiLiEarkqekpleqlalagadkpelspacsespssssgsrseeedsgkdapapglspsqgpagsdsac 84 
                 vA++ + Ea   ek+  ++a a   ++e++ a  ++ ++++g  s+eed++++ pa     +   a+ ++++
  KOO22039.1 143 VAVAAVDEAVAAEKAAAETAAAEEAEAEKAVAEKAAAEAARGVASDEEDEEDEVPAGAAAFAAAFAMASKEA 214
                 78888889999*************9*****999999*************99999987655554444444433 PP

  == domain 2  score: 0.3 bits;  conditional E-value: 0.17
         MRI  54 gsrseeedsgkdapapglspsqgpagsds 82 
                 +s+  e++   d +a +l ps +p+  +s
  KOO22039.1 210 ASKEAEKEALRDELARELPPSARPGQATS 238
                 55666777788999999999999987765 PP

>> BAF1_ABF1  BAF1 / ABF1 chromatin reorganising factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.9   4.9   0.00061       5.4     106     169 ..     153     219 ..      73     237 .. 0.74

  Alignments for each domain:
  == domain 1  score: 5.9 bits;  conditional E-value: 0.00061
   BAF1_ABF1 106 eeseeatkasaeaeteslkkdeseenketqkkkeadaadedddv...saaiaaAVaavadsknakee 169
                   +++a ++ a++e+e +k  +++++ e+++  ++d++de+d+v    aa+aaA a +++++++++ 
  KOO22039.1 153 AAEKAAAETAAAEEAEAEKAVAEKAAAEAARGVASDEEDEEDEVpagAAAFAAAFAMASKEAEKEAL 219
                 3344444555555666666677777788888888899999999933335666676666665555544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (263 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1575  (0.0878465); expected 358.6 (0.02)
Passed bias filter:                      609  (0.0339673); expected 358.6 (0.02)
Passed Vit filter:                        74  (0.00412739); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.50u 0.22s 00:00:00.72 Elapsed: 00:00:00.39
# Mc/sec: 2035.30
//
Query:       KOO22040.1  [L=708]
Description: hypothetical protein Ctob_002947 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
      3e-47  161.4   0.0    4.4e-47  160.8   0.0    1.2  1  Esterase      Putative esterase
    2.3e-24   85.8   0.0    5.5e-24   84.6   0.0    1.7  1  ADH_zinc_N    Zinc-binding dehydrogenase
    2.9e-19   68.9   0.8    7.1e-19   67.7   0.8    1.7  1  ADH_N         Alcohol dehydrogenase GroES-like domain
     0.0011   18.3   0.0     0.0023   17.2   0.0    1.5  1  Hydrolase_4   Serine aminopeptidase, S33
     0.0018   17.6   0.1      0.003   16.9   0.1    1.3  1  AlaDh_PNT_C   Alanine dehydrogenase/PNT, C-terminal domain
  ------ inclusion threshold ------
      0.031   14.5   0.0      0.076   13.3   0.0    1.6  1  TrkA_N        TrkA-N domain
        0.1   11.9   0.0       0.18   11.1   0.0    1.3  1  2-Hacid_dh_C  D-isomer specific 2-hydroxyacid dehydrogenase, 
       0.16   11.4   0.0       0.27   10.7   0.0    1.2  1  Peptidase_S9  Prolyl oligopeptidase family
       0.22   10.9   0.1       0.42   10.0   0.1    1.3  1  PrmA          Ribosomal protein L11 methyltransferase (PrmA)


Domain annotation for each model (and alignments):
>> Esterase  Putative esterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  160.8   0.0   2.2e-50   4.4e-47       1     233 [.      41     289 ..      41     296 .. 0.92

  Alignments for each domain:
  == domain 1  score: 160.8 bits;  conditional E-value: 2.2e-50
                 ETTTTEEEEEEEEE.CC.GGTTTEEEEEEE--TTHHCCHHHHHCHHCCCCHCCT.EEEEEECCCSS-TTTT.TSBTTSB..B.TTEEETTCCCCCCHC. CS
    Esterase   1 SealgreikvqvyLPedyspgrkypvvylldGltgwdqnfrakelleslaregeiaeviivvvprggessf.ysdwdlg..arfyenategpgaeaye. 95 
                 Se++++++  +v+ P++ + ++++p++y+l+Glt++d+nf  k++  + a++++ia+++++++prg  ++  ++d+dlg  a+fy++at+ p++ +y+ 
  KOO22040.1  41 SEETKTPMVASVFIPPGLEYANEIPALYWLSGLTCTDENFCQKSGAFAHAARHRIAVIVPDTSPRGAGVEGeDQDYDLGtgAGFYVDATAAPWSANYRm 139
                 8999**************************************************************9888779************************** PP

                 .HHHHTHHHHHHHHHCSEECCCEEEEEETHHHHHHHHHHHCSTTTCCEEEEES--S-CCHCHHHC.........TTCCHHHCC-CCCCHCHHCHTTSEE CS
    Esterase  96 .tfltqeLlplldanfrtapdgravaGqSmGGlgALilalkhpdrFgsvssfSpivnpsnamWgq.........eekeawqendpvllakelsaslkal 184
                  +++t+eL+ l++ +f+++p+ ra++G+SmGG+gAL++a k p+ ++svs+f+pi+np+++ Wg+         ++++a  ++d+  l  +     +  
  KOO22040.1 140 hSYITKELPALVEREFKISPKLRAIFGHSMGGHGALTIAFKDPEGWASVSAFAPICNPTECDWGKkafgayfgaVSDGA--AHDASELLRKHGPFPSLG 236
                 ***********************************************************99999999999999989998..999999999999999999 PP

                 EEEEEECTTBCCCHT.SCHHHHHHHHHHHCCHHHHCCCCCCTT-SCCCC......- CS
    Esterase 185 riyldvGtseddlge.qlsveilevlarnrelkeqlaargvegedheyd......G 233
                 ++++d+Gt++++lg+ ql++e+le++a + +++  l+     + dh+y+      G
  KOO22040.1 237 TVLVDQGTDDEFLGKgQLRPEALEEAAASVSQPLMLR--RR-EGDHSYYtistyiG 289
                 *****************************99994444..33.34455553445555 PP

>> ADH_zinc_N  Zinc-binding dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   84.6   0.0   2.8e-27   5.5e-24       1     124 [.     535     664 ..     535     670 .. 0.88

  Alignments for each domain:
  == domain 1  score: 84.6 bits;  conditional E-value: 2.8e-27
                 HHHHHHHHHHHHTT-.EEEEEESSHHHHHHHHHTTESEEEETTTC.H.HHHHHHHHTTTSSEEEEEESSCSHHHHHHHHHCEEEE.EEEEECSCTSSEE CS
  ADH_zinc_N   1 gvGlaavqlAkalGa.eviavdsseeklelakklGadevinykea.d.lverikeltggegvdvvfecvGsgatleaalkllkpg.GrlvvvGggkgee 95 
                 +vGl ++q+Ak +Ga ++ia+d +++k+  a+ +Ga+ ++n+k+    ++++i ++t + gvd++f+c+G+ ++++aal+++++g G+  v+G+   ++
  KOO22040.1 535 AVGLSVIQAAKLSGAsRIIAIDLNPQKFTAARAFGATDFVNPKDIeGpIQQHIIKMT-QWGVDYSFDCTGNTEVMRAALECAHRGwGTSCVIGVAASGK 632
                 69****************************************77653699*******.78**********************************66666 PP

                 EEEHHHHH.HTT-EEEEE-SSC..HHHHHHHH CS
  ADH_zinc_N  96 efdlrnll.lkeksilGsllgs..lreefkea 124
                 e+++r++   + ++ +G+ +g+   r++++++
  KOO22040.1 633 EISTRPFQlVTGRKWVGTAFGGwkSRSDVPKL 664
                 699999555*************4444444444 PP

>> ADH_N  Alcohol dehydrogenase GroES-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.7   0.8   3.6e-22   7.1e-19       2      82 ..     363     464 ..     362     493 .. 0.80

  Alignments for each domain:
  == domain 1  score: 67.7 bits;  conditional E-value: 3.6e-22
                 TEEEEEEEEEEE-HHHHHHHTTSTTTTSSSSEE---EEEEEEEEESTT-CS--TT-EEEE-SEEE-SS..SHHHHTT-GGG-................. CS
       ADH_N   2 gevlikvkaagiCgsDlhilkggkelevklplilGHEivGeveevgpevkklkvGdrVvvepliscge..CaaCkegeenlC................. 81 
                 gev+++v a ++C++D+ +++g +++e  +p+ilGHE+  +ve+vg++v+++k Gd+Vv   + +c+e  C  C++ ++nlC                 
  KOO22040.1 363 GEVRVRVIANALCHTDVYTWEG-SDPEGLFPCILGHEAGAIVESVGEGVSSVKPGDHVVPCYTPQCNEpdCIFCRSPKTNLCprirgtqgkglmpdgtt 460
                 79********************.8************************************9999998888************66666555555555555 PP

                 ...T CS
       ADH_N  82 ...e 82 
                    +
  KOO22040.1 461 rfkR 464
                 4441 PP

>> Hydrolase_4  Serine aminopeptidase, S33
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   0.0   1.2e-06    0.0023      78     115 ..     162     199 ..     139     228 .. 0.81

  Alignments for each domain:
  == domain 1  score: 17.2 bits;  conditional E-value: 1.2e-06
  Hydrolase_4  78 lfllGhSmGGliallyllrypdkvaglilsaPalkika 115
                  + ++GhSmGG  al+++ + p+ +a +  +aP +++ +
   KOO22040.1 162 RAIFGHSMGGHGALTIAFKDPEGWASVSAFAPICNPTE 199
                  689******************************99874 PP

>> AlaDh_PNT_C  Alanine dehydrogenase/PNT, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   0.1   1.5e-06     0.003      20      75 ..     519     573 ..     509     593 .. 0.79

  Alignments for each domain:
  == domain 1  score: 16.9 bits;  conditional E-value: 1.5e-06
                  TCEETCB---EEEEESTSHHHHHHHHHHHHTT-.EEEEEESSHHHHHHHHHTTTCEC CS
  AlaDh_PNT_C  20 aGgvpgvepakvlviGgGvaGlqAiatakglga.kVtvlDvrparleqleslgakfv 75 
                   ++v+  + a v v+G G +Gl+ i++ak  ga ++ ++D++p++    +++ga+ +
   KOO22040.1 519 TCKVE--NGASVAVFGCGAVGLSVIQAAKLSGAsRIIAIDLNPQKFTAARAFGATDF 573
                  45566..899*********************9945999**********999998754 PP

>> TrkA_N  TrkA-N domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.0   3.8e-05     0.076       1      42 [.     528     570 ..     528     578 .. 0.87

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 3.8e-05
                 EEEES-SHHHHHHHHHHHH.TTEEEEEEESSHHHHHHHHHTTS CS
      TrkA_N   1 iiiiGlGrvGrslaeeLse.ggkdvvvidkdeerveelreegl 42 
                 +++ G+G vG s+++  +  g +++++id +++++  +r+ g+
  KOO22040.1 528 VAVFGCGAVGLSVIQAAKLsGASRIIAIDLNPQKFTAARAFGA 570
                 689************999966678************9999884 PP

>> 2-Hacid_dh_C  D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   9.1e-05      0.18      34      78 ..     523     568 ..     509     579 .. 0.79

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 9.1e-05
                   GTTSEEEEES-SHHHHHHHHHHHHTT-.EEEEESSSHHHHHCHHHH CS
  2-Hacid_dh_C  34 lsgktvGiiGlGrIGqavakrlkafgm.kviaydrskkkeeeeeel 78 
                    +g  v+++G+G++G +v++ +k  g+ ++ia+d +++k +++++ 
    KOO22040.1 523 ENGASVAVFGCGAVGLSVIQAAKLSGAsRIIAIDLNPQKFTAARAF 568
                   57899******************999889*****999865544444 PP

>> Peptidase_S9  Prolyl oligopeptidase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   0.00013      0.27      54     111 ..     149     207 ..     143     231 .. 0.86

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00013
                   HHHHTT.S--GGGEEEEEETHHHHHHHHHHHH-GGG-SEEEEESE---CCCHHCSTTST CS
  Peptidase_S9  54 alakeg.yvdserlaitGgSyGGyltgaalnqrpdlFkaavaevpvvdvlrydsdtdll 111
                   al++++  ++++  ai+G+S GG  +++++ + p+ ++ + a +p+ + +  d  ++++
    KOO22040.1 149 ALVEREfKISPKLRAIFGHSMGGHGALTIAFKDPEGWASVSAFAPICNPTECDWGKKAF 207
                   57777778999999********************************9998888776655 PP

>> PrmA  Ribosomal protein L11 methyltransferase (PrmA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   0.1   0.00021      0.42     159     202 ..     522     567 ..     511     589 .. 0.84

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.00021
        PrmA 159 vkegeevlDvGtGSGiLai..aaakLgakkvvavDiDevAvkvake 202
                 v++g++v  +G+G+  L++  aa++ ga++++a+D++++  ++a++
  KOO22040.1 522 VENGASVAVFGCGAVGLSViqAAKLSGASRIIAIDLNPQKFTAARA 567
                 678899999****98888655555569***********99998875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (708 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       365  (0.0203581); expected 358.6 (0.02)
Passed bias filter:                      292  (0.0162865); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.55u 0.27s 00:00:00.82 Elapsed: 00:00:00.42
# Mc/sec: 5048.92
//
Query:       KOO22041.1  [L=357]
Description: monooxygenase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    4.9e-16   58.8   0.0    8.6e-15   54.8   0.0    2.1  2  Pyr_redox_3     Pyridine nucleotide-disulphide oxidoreductase
    2.7e-13   49.8   0.0    4.8e-13   49.0   0.0    1.4  2  K_oxygenase     L-lysine 6-monooxygenase (NADPH-requiring)
      3e-12   45.7   0.0    2.1e-11   42.9   0.0    1.9  2  FMO-like        Flavin-binding monooxygenase-like
    2.7e-10   40.0   0.0    4.1e-09   36.1   0.0    2.2  2  Pyr_redox_2     Pyridine nucleotide-disulphide oxidoreductase
  ------ inclusion threshold ------
      0.077   13.1   0.0       0.14   12.3   0.0    1.3  1  Shikimate_DH    Shikimate / quinate 5-dehydrogenase
       0.12   11.0   0.0       0.15   10.6   0.0    1.1  1  Staph_opine_DH  Staphylopine dehydrogenase


Domain annotation for each model (and alignments):
>> Pyr_redox_3  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.8   0.0   2.9e-18   8.6e-15      79     194 ..       4     134 ..       2     169 .. 0.82
   2 ?    2.0   0.0     0.034     1e+02     245     305 .]     272     343 ..     262     343 .. 0.64

  Alignments for each domain:
  == domain 1  score: 54.8 bits;  conditional E-value: 2.9e-18
  Pyr_redox_3  79 srkealeYlrevaksfelp..iklfeeVesvkk.....edegfevetsketyeAkkviiAtGefdkPnklnipGeeklvk.......hyskvkefhky 162
                  +++e+ +Y++++a+++ l       e+V ++++     +d+  +v t+k++++A++v++AtG   +P+ ++ipG+e+ +        h+  v+++++y
   KOO22041.1   4 TKHEVRDYMNRYAQNKGLAqcMSFGETVLRISHepevdKDRPWRVATDKRELRARRVVVATGLNRQPHIPHIPGSEERAAhgaralrHSWSVSSCDEY 101
                  567889999999999999644677899**99984433224559*******************************9973331223344788899***** PP

  Pyr_redox_3 163 agqkvvViGgknSavDaAlelvrkgae.Vtvvt 194
                  +g++v+ +G +nSa++ A+ l   ga+ + +++
   KOO22041.1 102 KGERVLLVGSGNSAAELAVALHHSGAKsIDILV 134
                  ***********************9975255555 PP

  == domain 2  score: 2.0 bits;  conditional E-value: 0.034
  Pyr_redox_3 245 ykvktedgkkvevkddvvlatGykpdl.sflkk..........slfeldedgrpvlteeteetnvpglflaG 305
                  ++  t++g  +e+    +latG++  + +fl +           + ++d++g p +++   +  ++ ++++G
   KOO22041.1 272 IQRFTSTGVVIEEGASLILATGFRHRMaDFLCAkdgllhtaasFGAADDAEGAPIIDSCSRSRVIDSIYFVG 343
                  55567888888999999******9874255543333332233334455666777777777777777777766 PP

>> K_oxygenase  L-lysine 6-monooxygenase (NADPH-requiring)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.0   0.0   1.6e-16   4.8e-13      94     225 ..       4     136 ..       1     147 [. 0.82
   2 ?   -3.4   0.0       1.4     4e+03     333     342 .]     287     296 ..     282     296 .. 0.81

  Alignments for each domain:
  == domain 1  score: 49.0 bits;  conditional E-value: 1.6e-16
  K_oxygenase  94 sRkefedYlrWvasq..leeqvrfgeeveevepdeeeee.elltveskdaegeeeelearnlvlgvG..tepkiPevleklegkervvHsseylerke 186
                  +++e  dY++  a++  l + ++fge+v +++++ e ++ + ++v +     +++el+ar++v+++G   +p+iP++  +   +er  H +++l++  
   KOO22041.1   4 TKHEVRDYMNRYAQNkgLAQCMSFGETVLRISHEPEVDKdRPWRVAT-----DKRELRARRVVVATGlnRQPHIPHIPGS---EERAAHGARALRHSW 93 
                  677888888777654339999**************99887889***8.....799************777999**98775...478888888888876 PP

  K_oxygenase 187 e.....llakkriaVvGsGqSaaeifedllrrqkkvelklvtrs 225
                  +     + +++r++ vGsG Saae++  l+++ + +++++++ +
   KOO22041.1  94 SvsscdEYKGERVLLVGSGNSAAELAVALHHSGA-KSIDILVDG 136
                  67777799*********************99866.566666655 PP

  == domain 2  score: -3.4 bits;  conditional E-value: 1.4
  K_oxygenase 333 avvlATGYrr 342
                   ++lATG+r+
   KOO22041.1 287 SLILATGFRH 296
                  689*****96 PP

>> FMO-like  Flavin-binding monooxygenase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.9   0.0   7.1e-15   2.1e-11      82     208 ..       4     128 ..       1     152 [. 0.86
   2 ?    0.5   0.0     0.053   1.6e+02     290     317 ..     259     287 ..     254     299 .. 0.84

  Alignments for each domain:
  == domain 1  score: 42.9 bits;  conditional E-value: 7.1e-15
    FMO-like  82 hnsklleylklfakefdllkyiqfkttvcsvkkrpdfstsGqwevvtekegkkesavfdavmvctGhhvnphlplesfpGiek..fkG..qyfhsrdyk 176
                  + ++ +y++ +a++++l + + f  tv+ +  +p++ +   w v t+k + + +     v+v tG   +ph+p    pG e+    G   + hs    
  KOO22041.1   4 TKHEVRDYMNRYAQNKGLAQCMSFGETVLRISHEPEVDKDRPWRVATDKRELRARR----VVVATGLNRQPHIPH--IPGSEEraAHGarALRHSWSVS 96 
                 677899*****************************************988887775....6899**********7..6777641134422467****** PP

    FMO-like 177 epevfkgkrvlviGlGnsggdiavelsrtaeq 208
                 + + +kg rvl++G Gns++++av l ++ ++
  KOO22041.1  97 SCDEYKGERVLLVGSGNSAAELAVALHHSGAK 128
                 **************************998766 PP

  == domain 2  score: 0.5 bits;  conditional E-value: 0.053
    FMO-like 290 rilaGavkvk.ssvkeltetsaifedgtv 317
                  i+ Gav +k ++++++t t ++ e+g+ 
  KOO22041.1 259 LIMSGAVGIKrGRIQRFTSTGVVIEEGAS 287
                 5899***997479************9974 PP

>> Pyr_redox_2  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.1   0.0   1.4e-12   4.1e-09      77     178 ..      41     140 ..       4     153 .. 0.72
   2 ?    1.7   0.0      0.04   1.2e+02      75     114 ..     264     299 ..     229     343 .. 0.71

  Alignments for each domain:
  == domain 1  score: 36.1 bits;  conditional E-value: 1.4e-12
                  EEEESCEEEEETEEEC....TCEEEEEESEEEE---E..EE-BCTCTTC.TTBEECCSECHHHHHHCCSS-T..SEEEEES-SHHHHHHHHHHHHHT- CS
                  xxxxxxxxxxxxxxxx....xxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2  77 kidpgkkkvklekkke....gdeekiaydklvlAtGs..sprdlgipGvaenvgklvrtldsaealklkllp..krivvvGgGyiGvElAaalaklgk 166
                  + d+                 d++++ + ++v+AtG   +p++++ipG +e + ++ r+l++   +++      +r++ vG+G+ + ElA al+  g+
   KOO22041.1  41 DKDR-----------PwrvaTDKRELRARRVVVATGLnrQPHIPHIPGSEERAAHGARALRHSWSVSSCDEYkgERVLLVGSGNSAAELAVALHHSGA 127
                  3333...........1333357899***********76699999*****88887776666665555543333679*********************88 PP

                  E.EEEEESSSSSS CS
                  x.xxxxxxxxxxx RF
  Pyr_redox_2 167 e.vtlveardrll 178
                  + + ++ +++r  
   KOO22041.1 128 KsIDILVDGPRHF 140
                  8798888888866 PP

  == domain 2  score: 1.7 bits;  conditional E-value: 0.04
                  CEEEEESC.EEEEETEEECTCEEEEEESEEEE---EEE-BC CS
                  xxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2  75 vvkidpgk.kkvklekkkegdeekiaydklvlAtGssprdl 114
                  +v+i +g+ ++++ +  +       +  +l+lAtG++ r  
   KOO22041.1 264 AVGIKRGRiQRFTSTGVV-----IEEGASLILATGFRHRMA 299
                  555555555555554444.....224578999999987765 PP

>> Shikimate_DH  Shikimate / quinate 5-dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   4.5e-05      0.14       7      41 ..      98     132 ..      94     142 .. 0.91

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 4.5e-05
                   HS..TT-EEEEES-SHHHHHHHHHHHCCT-CEEEE CS
  Shikimate_DH   7 leslkekkvlliGaGemaelvakhLlakgvkkvvv 41 
                    +++k+++vll+G G+ a ++a +L+++g+k++ +
    KOO22041.1  98 CDEYKGERVLLVGSGNSAAELAVALHHSGAKSIDI 132
                   568999*************************9977 PP

>> Staph_opine_DH  Staphylopine dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0   5.1e-05      0.15       2      69 ..     105     177 ..     104     201 .. 0.60

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 5.1e-05
                     SEEEES-SHHHHHHHHHHHHH--SSEEEE-...-S....SHHHH..HHHHHHHTT--EEEEE..-GGGGGG-EEE-- CS
  Staph_opine_DH   2 rvLllGtGpaaiqlavllkkklearlgiag...re....svrse..rlfealarsaqlvrvsvqnekhralegevti 69 
                     rvLl+G+G  a  lav l++ ++  ++i+    r+    s+ ++  rlf +l+ s+    +s+ ++ hr++ ge+t 
      KOO22041.1 105 RVLLVGSGNSAAELAVALHHSGAKSIDILVdgpRHfvrrSTMGQifRLFPYLSLST----ESMVHDLHRCTFGEHTA 177
                     8**************************97422233111133332222333343333....33334455555555544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (357 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       324  (0.0180713); expected 358.6 (0.02)
Passed bias filter:                      304  (0.0169558); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.47u 0.24s 00:00:00.71 Elapsed: 00:00:00.40
# Mc/sec: 2661.23
//
Query:       KOO22042.1  [L=258]
Description: hypothetical protein Ctob_002943 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
  ------ inclusion threshold ------
       0.25   11.9   1.7       0.55   10.8   0.2    2.1  2  FlgT_N         Flagellar assembly protein T, N-terminal domai
        1.2    9.2   5.7        6.8    6.8   2.3    2.8  2  Ac76           Orf76 (Ac76)
        1.4    9.0  17.3        1.5    8.9   0.3    3.0  2  Ferric_reduct  Ferric reductase like transmembrane component
        5.4    7.3  15.6       0.15   12.4   6.8    2.0  2  DUF996         Protein of unknown function (DUF996)


Domain annotation for each model (and alignments):
>> FlgT_N  Flagellar assembly protein T, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.2   0.00012      0.55      11      35 ..       9      31 ..       4      42 .. 0.84
   2 ?   -0.7   0.1       0.5   2.3e+03      19      38 ..     217     236 ..     211     250 .. 0.69

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00012
      FlgT_N 11 IinnddiAreqAredAlkqAllyag 35
                I+++d+ Ar  Ar+dA+++A++  +
  KOO22042.1  9 IVGGDEEAR--ARDDAIEEAIKATT 31
                788899***..**********9765 PP

  == domain 2  score: -0.7 bits;  conditional E-value: 0.5
      FlgT_N  19 reqAredAlkqAllyagaqv 38 
                 + qA+++A ++ ++  +  +
  KOO22042.1 217 SVQAMYNARQKMVKAEATLA 236
                 45788888888777665554 PP

>> Ac76  Orf76 (Ac76)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.2   0.1      0.04   1.8e+02      15      47 ..     108     140 ..     103     151 .. 0.79
   2 ?    6.8   2.3    0.0015       6.8      32      71 ..     199     237 ..     163     243 .. 0.81

  Alignments for each domain:
  == domain 1  score: 2.2 bits;  conditional E-value: 0.04
        Ac76  15 fildkneklsellltllllfvlFiillnvyyik 47 
                 ++ + +++   +++  l + +lF  +l+ +y  
  KOO22042.1 108 IVTEETSGKVYVFINSLAMWFLFGAVLHSMYLY 140
                 566667777778899999**********99974 PP

  == domain 2  score: 6.8 bits;  conditional E-value: 0.0015
        Ac76  32 llfvlFiillnvyyikteStpadlytekakkikKkrdled 71 
                 + + +F++ + ++y++t+S  + +y+   k +k    l +
  KOO22042.1 199 IGIAIFFMAVPLVYASTKSV-QAMYNARQKMVKAEATLAK 237
                 45679*************97.99*********98877765 PP

>> Ferric_reduct  Ferric reductase like transmembrane component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.9   0.3   0.00034       1.5      50      95 ..      47      92 ..      42      98 .. 0.89
   2 ?    0.8  11.4      0.12   5.2e+02      36     102 ..     120     186 ..     108     225 .. 0.60

  Alignments for each domain:
  == domain 1  score: 8.9 bits;  conditional E-value: 0.00034
  Ferric_reduct 50 lHvilyllnflrfsaldeerlldsllkkpynllGvlalllliilai 95
                   +H+++ ++ +l+  +++ + ++   +k++++ +Gv+a ll+ ++ +
     KOO22042.1 47 AHWLFLTFEWLKLGDKVHTTESGNTIKDNFVNVGVVAALLFTMVTL 92
                   8************999**********************99988765 PP

  == domain 2  score: 0.8 bits;  conditional E-value: 0.12
  Ferric_reduct  36 fHkwlgvlafllallHvilyllnflrfsaldeerlldsllkkpynllGvlalllliilaitSlkfir 102
                    f   l+++ ++ a+lH ++ +++    + + e +++++ + +    + ++ l++ ++l+i++  +++
     KOO22042.1 120 FINSLAMWFLFGAVLHSMYLYCQLSELQTSTEVGYWSESMGFIMLNFHLFYLVVGFVLYILAQAWLV 186
                    556789999999****988888887777776666666666666666444444444444444444333 PP

>> DUF996  Protein of unknown function (DUF996)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   6.8   3.3e-05      0.15      38     134 ..      79     182 ..      70     185 .. 0.82
   2 ?    0.3   1.3      0.17   7.8e+02      43      55 ..     195     207 ..     182     235 .. 0.45

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 3.3e-05
      DUF996  38 ialvvailalllvlgalatalelpgleeaas......lilllllvliiayvl.liisavflkksyellgkrtgvklFetagllyfiGaiLtivlvGlii 129
                 +++v+a l ++++l a+a++ e+++++ + +       + +++ +l + +++ +++ +++l+  +++l+++t v + + +  ++++   L+ ++vG+++
  KOO22042.1  79 VGVVAALLFTMVTLDATAVGPEIAQFSSGIVteetsgKVYVFINSLAMWFLFgAVLHSMYLYCQLSELQTSTEVGYWSESMGFIMLNFHLFYLVVGFVL 177
                 456666777777788888888888777766688888767777777755554437999****************************************** PP

      DUF996 130 lliae 134
                 ++ a+
  KOO22042.1 178 YILAQ 182
                 *9986 PP

  == domain 2  score: 0.3 bits;  conditional E-value: 0.17
      DUF996  43 ailalllvlgala 55 
                  ++ ++++++++a
  KOO22042.1 195 GFVSIGIAIFFMA 207
                 2222222222221 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (258 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1152  (0.0642534); expected 358.6 (0.02)
Passed bias filter:                      502  (0.0279993); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.47u 0.26s 00:00:00.73 Elapsed: 00:00:00.42
# Mc/sec: 1862.87
//
Query:       KOO22043.1  [L=276]
Description: egl nine-like 3 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    4.4e-19   69.2   0.0      1e-18   68.0   0.0    1.6  2  2OG-FeII_Oxy_3  2OG-Fe(II) oxygenase superfamily
    1.5e-09   38.4   0.0    2.3e-09   37.8   0.0    1.3  1  2OG-FeII_Oxy_4  2OG-Fe(II) oxygenase superfamily


Domain annotation for each model (and alignments):
>> 2OG-FeII_Oxy_3  2OG-Fe(II) oxygenase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.0       1.3   1.2e+04      60      73 ..     117     130 ..     102     145 .. 0.73
   2 !   68.0   0.0   1.1e-22     1e-18       1      95 [.     173     263 ..     173     264 .. 0.92

  Alignments for each domain:
  == domain 1  score: -2.7 bits;  conditional E-value: 1.3
                     ---TT-EEEEE-.. CS
  2OG-FeII_Oxy_3  60 kpkkgrlvlFesde 73 
                     + ++g+l+++ s+e
      KOO22043.1 117 QQRRGDLMAWVSTE 130
                     35788888888754 PP

  == domain 2  score: 68.0 bits;  conditional E-value: 1.1e-22
                     -EEEEE.-TT-EEEEE-SS----TT.-.EEEEEEEEE.....ET-B--EEE..........---TT-EEEEE-..B-TEEE--B.-SS-EEEEEE CS
  2OG-FeII_Oxy_3   1 lqvlry.gegqeykpHvDnfekeegsgqrrltvllyLne.keseeGGelelyekdkeavkikpkkgrlvlFesdellpHevlpvtkggeRlsltg 93 
                     +qv++y g+g +y +HvD     +gs+ r+lt++ y n+ +e+ +GG+l+l +  + a++++p+  rlvlF+sd + pHevlp ++  eR+++++
      KOO22043.1 173 MQVTCYpGNGARYVKHVDDP---HGSRGRVLTLIAYSNPrWEPGHGGALRL-HVPSGARDVEPRDRRLVLFWSDARAPHEVLPAHR--ERYAVSV 261
                     79****999*********87...45567***********************.66669**************************855..9****** PP

                     EE CS
  2OG-FeII_Oxy_3  94 wi 95 
                     w+
      KOO22043.1 262 WF 263
                     *9 PP

>> 2OG-FeII_Oxy_4  2OG-Fe(II) oxygenase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.8   0.0   2.5e-13   2.3e-09       1      92 [.     173     263 ..     173     264 .. 0.81

  Alignments for each domain:
  == domain 1  score: 37.8 bits;  conditional E-value: 2.5e-13
  2OG-FeII_Oxy_4   1 lsvssYe.kgdvllnHdDvlege..RrvayilyleeeWkeddGGaLllsddegdvtksivPkwnqlvlFevkes..hsvaevasvaekeRlsisg 90 
                     ++v++Y  +g  +++H D   g+  R++++i y +++W++  GGaL+l+  +g   +++ P+  +lvlF +     h+v      a++eR ++s 
      KOO22043.1 173 MQVTCYPgNGARYVKHVDDPHGSrgRVLTLIAYSNPRWEPGHGGALRLHVPSGA--RDVEPRDRRLVLFWSDARapHEVLP----AHRERYAVSV 261
                     688899834566****88865532499**********************97776..89************95432466655....578******* PP

  2OG-FeII_Oxy_4  91 Wf 92 
                     Wf
      KOO22043.1 262 WF 263
                     *9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (276 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       294  (0.016398); expected 358.6 (0.02)
Passed bias filter:                      249  (0.0138881); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.44u 0.25s 00:00:00.69 Elapsed: 00:00:00.42
# Mc/sec: 1955.21
//
Query:       KOO22044.1  [L=337]
Description: voltage-gated ion channel superfamily [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    5.5e-08   32.7   2.9    5.5e-08   32.7   2.9    2.2  2  Ion_trans_2   Ion channel
    9.2e-07   28.3   0.2    1.8e-06   27.4   0.2    1.4  1  Ion_trans     Ion transport protein
  ------ inclusion threshold ------
       0.31   10.7   0.0       0.31   10.7   0.0    2.3  3  Orai-1        Mediator of CRAC channel activity
       0.33   10.8   2.3        0.4   10.6   0.3    2.0  2  Chordopox_L2  Chordopoxvirus L2 protein
       0.77    9.3   2.7        1.8    8.1   0.1    2.5  2  UBM           Ubiquitin binding region


Domain annotation for each model (and alignments):
>> Ion_trans_2  Ion channel
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   1.2       1.3   4.5e+03      56      74 ..       5      23 ..       4      29 .. 0.67
   2 !   32.7   2.9   1.5e-11   5.5e-08      23      74 ..     212     263 ..     149     268 .. 0.85

  Alignments for each domain:
  == domain 1  score: -2.3 bits;  conditional E-value: 1.3
                 HHHHHHHHHHHHHHHHHHH CS
  Ion_trans_2 56 ivyillGlalfalflavlg 74
                 i+yi+  l+ +a++++ +g
   KOO22044.1  5 IFYIFSTLVAVATATTSIG 23
                 6677777777776666665 PP

  == domain 2  score: 32.7 bits;  conditional E-value: 1.5e-11
                  --HHHHHHHHHHHHTTS----SSTT-----HHHHHHHHHHHHHHHHHHHHHH CS
  Ion_trans_2  23 wsfldalYfsfvtltTiGYGdivpetdagrlftivyillGlalfalflavlg 74 
                  + ++ ++Y+++v ++TiG+Gdivp+t a  + + ++i  G +l+ ++++ + 
   KOO22044.1 212 HAYVRSVYWFIVAVSTIGFGDIVPRTIAETWAMGILIAPGAMLYPAIISAIM 263
                  67889***********************999998888888888888887765 PP

>> Ion_trans  Ion transport protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.4   0.2   4.9e-10   1.8e-06     123     242 ..     139     272 ..     126     275 .. 0.78

  Alignments for each domain:
  == domain 1  score: 27.4 bits;  conditional E-value: 4.9e-10
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCC...............CC....SCCSTSSSTTTSSSSSSHHHHHHHHHHHHTTSSHHHHHHHH CS
   Ion_trans 123 lirsvkdllnvlllllvvlfifaligvqlfkgklrek...............ne....caktwenpnngntnFdnfftallwlfrlmttegwgdilyat 202
                 + r++  ++  l+ l++ ++i  ++g+ + ++ +  +                       ++ ++p++  + F+ ++ +++w ++  +t+g+gdi++ t
  KOO22044.1 139 IRRMISLIFAWLISLHWGGCIMLWLGLVRSDNAFAGAsdfgtggswltwdamYLrelaRDDEIASPDDEMSPFHAYVRSVYWFIVAVSTIGFGDIVPRT 237
                 46899999**********************777776677776666655555500556656778889999999*************************** PP

                 HHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
   Ion_trans 203 ldekskvaliyfvifiilgsflllNlliaviadnfqelte 242
                 + e        ++i+i  g++l  +++ a++   f+ +t 
  KOO22044.1 238 IAET-----WAMGILIAPGAMLYPAIISAIMLLLFDAITA 272
                 ****.....6666666666666666666666666666655 PP

>> Orai-1  Mediator of CRAC channel activity
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   8.7e-05      0.31      51     114 ..       3      73 ..       1      83 [. 0.85
   2 ?   -3.5   0.2         2   7.1e+03     110     120 ..     147     159 ..     133     166 .. 0.56
   3 ?    0.1   0.3      0.16   5.6e+02     117     158 ..     215     256 ..     199     281 .. 0.70

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 8.7e-05
      Orai-1  51 ealliafsvvtavlvavhllallistliLpnieavskienledeeve.......esphekleeyiekaWlf 114
                 e ++++fs++ av+ a   + lli tl+   +++ + + ++e + +        + + ++++ey++ +Wlf
  KOO22044.1   3 ELIFYIFSTLVAVATATTSIGLLIPTLMRSDVLKETWLARVERADAVikrrkipPELARRIQEYLQYQWLF 73 
                 56789*************************9999977777774433366888888899***********98 PP

  == domain 2  score: -3.5 bits;  conditional E-value: 2
      Orai-1 110 kaWlfatalG..i 120
                  aWl++ + G  i
  KOO22044.1 147 FAWLISLHWGgcI 159
                 3666666664233 PP

  == domain 3  score: 0.1 bits;  conditional E-value: 0.16
      Orai-1 117 alGillFLvevallswvkFlavssaaalvvtailvpvlilfv 158
                 +  +  F+v+v+++ +   ++ + a  +++ ++++p  +l+ 
  KOO22044.1 215 VRSVYWFIVAVSTIGFGDIVPRTIAETWAMGILIAPGAMLYP 256
                 455667777777777777777777666666666666666664 PP

>> Chordopox_L2  Chordopoxvirus L2 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.1      0.65   2.3e+03      36      49 ..     139     152 ..     123     154 .. 0.84
   2 ?   10.6   0.3   0.00011       0.4      33      64 ..     256     287 ..     244     290 .. 0.93

  Alignments for each domain:
  == domain 1  score: -1.5 bits;  conditional E-value: 0.65
  Chordopox_L2  36 lrpllrLlfDlLil 49 
                   +r ++ L+f  Li 
    KOO22044.1 139 IRRMISLIFAWLIS 152
                   79999999999885 PP

  == domain 2  score: 10.6 bits;  conditional E-value: 0.00011
  Chordopox_L2  33 pailrpllrLlfDlLilvivviillfrlvvRN 64 
                   pai+  ++ LlfD++   +v++  + ++v RN
    KOO22044.1 256 PAIISAIMLLLFDAITARTVLATTVRDFVHRN 287
                   6899999************************* PP

>> UBM  Ubiquitin binding region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.1   0.1   0.00051       1.8       8      24 ..      76      93 ..      73      93 .. 0.88
   2 ?    0.3   0.3      0.15   5.3e+02      14      21 ..     314     321 ..     313     321 .. 0.89

  Alignments for each domain:
  == domain 1  score: 8.1 bits;  conditional E-value: 0.00051
         UBM  8 giDp.sFLaaLPpdLReE 24
                g D  +F++ LP +LR E
  KOO22044.1 76 GADEsTFFEGLPASLRSE 93
                568889**********98 PP

  == domain 2  score: 0.3 bits;  conditional E-value: 0.15
         UBM  14 LaaLPpdL 21 
                 L +LPp+L
  KOO22044.1 314 LRSLPPSL 321
                 89****98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (337 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       539  (0.030063); expected 358.6 (0.02)
Passed bias filter:                      396  (0.0220871); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.46u 0.26s 00:00:00.72 Elapsed: 00:00:00.41
# Mc/sec: 2492.09
//
Query:       KOO22045.1  [L=1452]
Description: cyclic nucleotide-binding protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    5.1e-17   61.7   1.8    5.9e-09   35.9   1.4    5.0  3  cNMP_binding  Cyclic nucleotide-binding domain
    8.4e-12   44.8  10.8    2.5e-06   26.9   2.4    2.4  2  Ion_trans     Ion transport protein
    0.00089   19.2  12.8     0.0059   16.6   0.4    2.9  2  Ion_trans_2   Ion channel


Domain annotation for each model (and alignments):
>> cNMP_binding  Cyclic nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.4   0.0   0.00018       1.1      41      88 ..      14      61 ..       5      62 .. 0.88
   2 !   35.9   1.4   9.8e-13   5.9e-09       4      86 ..     573     688 ..     571     690 .. 0.92
   3 !    6.7   0.0    0.0012       7.3       4      30 ..    1213    1239 ..    1210    1252 .. 0.85

  Alignments for each domain:
  == domain 1  score: 9.4 bits;  conditional E-value: 0.00018
                  EEEEE-TTEEESHHHHHHTS--SSEEEESSTEEEEEEEHHHHHHHHHH CS
  cNMP_binding 41 vlavlgpGdlfGelalltgeprtatvvAltdsellalprddflellqq 88
                  +++ + +G  +G  +++ g ++ +++ A+  +e+++l+r+ f+ell++
    KOO22045.1 14 LIEKVDEGGNIGAEEFVLGITHRYDILAVQMCECMQLRRKPFNELLSR 61
                  677788888899999998899************************986 PP

  == domain 2  score: 35.9 bits;  conditional E-value: 9.8e-13
                   E-TT-EEE-TTSB-S.EEEEEEES-EEEE...............................EEETTS.EEEEEEE-TTEEESHHHHH.HTS--SSEEE CS
  cNMP_binding   4 fkagevifrqGdpad.slyivlsGevrvy...............................rlsedgkevvlavlgpGdlfGelall.tgeprtatvv 67 
                   + +ge +  +Gd+++  +y+v++G ++++                               ++ e+ k++v+a++++G+++Ge++++ +g+ r a+v+
    KOO22045.1 573 ITPGELLMIEGDTGTyDMYVVVEGVFEIVttggrlkvlqtpvqrrkkaeallgekmsfteQQIEHIKSQVVATVSSGAVLGEVSFFlQGTARNASVR 669
                   579**********999************999****9999999999999998888888777777777999*****************98899****** PP

                   ESSTEEEEEEEHHHHHHHH CS
  cNMP_binding  68 Altdsellalprddflell 86 
                   A+t++++++l+r+++++++
    KOO22045.1 670 AVTRAHVIQLTRRQLDAAC 688
                   **************99876 PP

  == domain 3  score: 6.7 bits;  conditional E-value: 0.0012
                    E-TT-EEE-TTSB-SEEEEEEES-EEE CS
  cNMP_binding    4 fkagevifrqGdpadslyivlsGevrv 30  
                    f  g+ ++++G pa++ly+v  G++ v
    KOO22045.1 1213 FLEGDNVITKGAPATKLYLVDVGKLLV 1239
                    67899*******************988 PP

>> Ion_trans  Ion transport protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.4   1.4     1e-08     6e-05      35     239 ..     231     476 ..     209     482 .. 0.64
   2 !   26.9   2.4   4.2e-10   2.5e-06       3     236 ..     850    1113 ..     848    1118 .. 0.72

  Alignments for each domain:
  == domain 1  score: 22.4 bits;  conditional E-value: 1e-08
                 HHHHHHHHHHHHHHHH.HHHHHHHTH............HHHHHHCHSHHHHHHHHHHHHHHHHH..........HHHH.................HHHH CS
   Ion_trans  35 leilelvftaiftlem.llkilalgl............likkrYlrdpwnilDflvvlpsllsl..........vlse.................esll 93 
                 l+++++++++ + +++ + ++++ g               ++r  r++ ++  ++ v + +l++                                  l
  KOO22045.1 231 LCVFDFFVDVAIGIDLlVAQLHTVGGsaastaraadapTTARRTARHMLFFSLLFLVAVLVLDIlsiavagvrsG--GgavsdaaaqtasivwavRLPL 327
                 666666666666666655566665555666666766665566666665444444444444444444554444440..0444444555555542222222 PP

                 HHHHHHHHGGGGGGH..HHCHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCCCC.....SCCSTSSSTTTSSSSSS....... CS
   Ion_trans  94 llsvlrlfrvlrllk..lisrleglrtlvtalirsvkdllnvlllllvvlfifaligvqlfkgklrekne.....caktwenpnngntnFdn....... 178
                 l+ ++   r l+ l   l++r+++  +     +r  ++ll +++ +++ ++i+a+ig+  f+ ++  +++       +             +       
  KOO22045.1 328 LVLLP---RHLYSLEawLLERSPSTDI---QHVRLGRMLLAIFVTSHLAGCIWAIIGLRDFQATFVSNTSehawsA-Y-------------Swwagdvl 406
                 22222...4444444114578888777...679999*************************666663322334422.2.............12333444 PP

                 ...............HHHHHHHHHHHHTTSSHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
   Ion_trans 179 ...............fftallwlfrlmttegwgdilyatldekskvaliyfvifiilgsflllNlliaviadnfqe 239
                                 +  ++ +f ++  +  gd+ ++t++e       y ++f+il+   +++ + + +++ ++ 
  KOO22045.1 407 iiegvatcqslavlaWLRGVYIAFGTLLIIPIGDVAPTTMNET------YIMLFFILVLATVVAAVEGTVVNVIAA 476
                 444455555599999999*************************......888888888888887777777766665 PP

  == domain 2  score: 26.9 bits;  conditional E-value: 4.2e-10
                  HHHHHHHHHHHHHHHHHHC.CCSSSSHHHHC..HHHHHH..HHHHHHHHHHHHHHHHHHHTH................HHHHHHCHSHHHHHHHHHH CS
   Ion_trans    3 vfelfilllillncvflal.etyfpedelek..tileil..elvftaiftlemllkilalgl................likkrYlrdpwnilDflvv 78  
                  ++e++++++ ++ ++ +++   +f + ++    +++ il   ++++ai + + +l+  ++++                 ++ +Y++    +lD+l++
  KOO22045.1  850 LWEWLMTVISFYLAISIPFiIAAFGPRSPVSvdSAWAILatQWACDAILLCDSVLRANCFPFlprgrevfmkselthsAMRAHYVQAK-LRLDVLAT 945 
                  7999999999999999999644445544444565555554599*********************************9999999****7.******** PP

                  HHHHHHH.......HHHH..HHHHHHHHHHHHGGGGGGHHHCHSHH.HHH...HHH.HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCC.. CS
   Ion_trans   79 lpsllsl.......vlse..esllllsvlrlfrvlrllklisrleg.lrt...lvt.alirsvkdllnvlllllvvlfifaligvqlfkgklrek.. 159 
                  lp+ + +          +  + ll++++lrl r+lr  +++++++  +       + +l ++   +l+v  l+l v+ +f +++  lf      +  
  KOO22045.1  946 LPYEALApigfattG--DtkTILLAVALLRLPRLLRCSRCLEHFRVaF-GwlpP-QlCLSKAQSRMLLVWSLWLYVVHAFTCFF--LF-----DAyt 1031
                  *****8887765541..0344455555555555555555555554421.12221.23566666666666666666666666666..66.....2222 PP

                  ......CC....SCCSTSSSTTTSSS.SSSHHHHHHHHHHHHTTSSHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
   Ion_trans  160 ......ne....caktwenpnngntn.FdnfftallwlfrlmttegwgdilyatldekskvaliyfvifiilgsflllNlliaviadn 236 
                        ++    +  +w+ ++  + +  +++  a  +++  m t g+gd+ +++  e        f+++++l++  l++ +i++i+++
  KOO22045.1 1032 lplsalGRnwmtEDLAWKRADWAHETiGHSYARAAHFVLSHMATPGLGDVRPQNAWET------GFIMVLVLVTTALYSCVIGLISSY 1113
                  223333114455566777777776665678999*************************......999999999999999999999875 PP

>> Ion_trans_2  Ion channel
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.4   6.3     0.003        18      20      77 ..     417     474 ..     394     476 .. 0.84
   2 !   16.6   0.4   9.8e-07    0.0059      22      76 ..    1059    1113 ..    1012    1115 .. 0.85

  Alignments for each domain:
  == domain 1  score: 5.4 bits;  conditional E-value: 0.003
                  .T---HHHHHHHHHHHHTTS----SSTT-----HHHHHHHHHHHHHHHHHHHHHHHHH CS
  Ion_trans_2  20 wekwsfldalYfsfvtltTiGYGdivpetdagrlftivyillGlalfalflavlgkvl 77 
                  ++   +l  +Y +f tl+ i  Gd++p+t    ++++++il+  +++a++  ++++v+
   KOO22045.1 417 LAVLAWLRGVYIAFGTLLIIPIGDVAPTTMNETYIMLFFILVLATVVAAVEGTVVNVI 474
                  4556899*********************99999999******9999999988888876 PP

  == domain 2  score: 16.6 bits;  conditional E-value: 9.8e-07
                   ---HHHHHHHHHHHHTTS----SSTT-----HHHHHHHHHHHHHHHHHHHHHHHH CS
  Ion_trans_2   22 kwsfldalYfsfvtltTiGYGdivpetdagrlftivyillGlalfalflavlgkv 76  
                   ++s+  a  f++  + T G Gd+ p++++   f++v++l+  al+++++ +++++
   KOO22045.1 1059 GHSYARAAHFVLSHMATPGLGDVRPQNAWETGFIMVLVLVTTALYSCVIGLISSY 1113
                   678999999****************************************999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1452 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       640  (0.0356964); expected 358.6 (0.02)
Passed bias filter:                      387  (0.0215851); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.82u 0.32s 00:00:01.13 Elapsed: 00:00:00.46
# Mc/sec: 9390.31
//
Query:       KOO22046.1  [L=152]
Description: histone H3 k4-specific methyltransferase set7 9 n-terminal domain-containing protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.6e-08   35.3   0.1    4.4e-06   27.5   0.1    2.1  2  Filamin     Filamin/ABP280 repeat
     0.0002   21.6   0.6     0.0013   19.0   0.2    2.3  3  Invasin_D3  Invasin, domain 3


Domain annotation for each model (and alignments):
>> Filamin  Filamin/ABP280 repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.5   0.1   4.9e-10   4.4e-06      35     102 ..       3      79 ..       1      80 [. 0.69
   2 !    6.3   0.0    0.0019        17       5      39 ..      91     125 ..      87     147 .. 0.78

  Alignments for each domain:
  == domain 1  score: 27.5 bits;  conditional E-value: 4.9e-10
                 CCCSTTS..EEEEE....ESSTS...............EEEEEEEE-SSSEEEEEE--SSSCEEEEEEEETTCE-TTSSE CS
     Filamin  35 eksevggdelqvriv..tgsphgaatks..........svkievvdnedgtytvsYtpeepgtyrvsvkldgkhiggsPf 102
                 +++++gg  l v+ v  +++++++   +          +v  ++vdn+dg+y+  +t + +g y+vs+++d+ h  gsP 
  KOO22046.1   3 NRCTSGGAALTVNTVinVAGEEKK---KlkeneaaavtNVVSKCVDNKDGSYRLGWTSQVAGVYSVSITIDNVHLVGSPV 79 
                 556666666665554331222222...1222344554555568************************************5 PP

  == domain 2  score: 6.3 bits;  conditional E-value: 0.0019
                 TSEEEESGGGTEEETTS-EEEEEEESSSTSCCCST CS
     Filamin   5 skskvnGpGieasvagesltFtvytkdakgeksev 39 
                 ++++v+G+G ++++ag+++ +  ++kd  g+    
  KOO22046.1  91 DQIQVSGDGTQQAQAGKPALVVLKCKDFFGNVAST 125
                 6789**********************998875444 PP

>> Invasin_D3  Invasin, domain 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.0   0.2   1.5e-07    0.0013      41      93 ..      26      83 ..       6      86 .. 0.71
   2 ?    1.3   0.0      0.05   4.5e+02      36      65 ..      74     104 ..      70     107 .. 0.80
   3 ?   -0.7   0.0       0.2   1.8e+03      22      41 ..     109     130 ..      97     136 .. 0.74

  Alignments for each domain:
  == domain 1  score: 19.0 bits;  conditional E-value: 1.5e-07
  Invasin_D3 41 vtfsttsag....tlsavtdngdGtytatLtattagtatitptvnG.vaiaatatvtl 93
                 +++ ++a     ++s+  dn+dG y    t++ ag+++++ t+++    ++++  tl
  KOO22046.1 26 KKLKENEAAavtnVVSKCVDNKDGSYRLGWTSQVAGVYSVSITIDNvHLVGSPVMMTL 83
                4444442222234788999**************************9655555555555 PP

  == domain 2  score: 1.3 bits;  conditional E-value: 0.05
  Invasin_D3  36 vsgltvtfsttsag..tlsavtdngdGtytat 65 
                 + g  v ++ + ag   + +++ +gdGt +a+
  KOO22046.1  74 LVGSPVMMTLQ-AGppEIDQIQVSGDGTQQAQ 104
                 56777888888.88899999999999999885 PP

  == domain 3  score: -0.7 bits;  conditional E-value: 0.2
  Invasin_D3  22 stltvtlkDangnp..vsgltv 41 
                 +++ ++ kD +gn   +sg ++
  KOO22046.1 109 ALVVLKCKDFFGNVasTSGSAI 130
                 5677889999999966666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (152 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       605  (0.0337442); expected 358.6 (0.02)
Passed bias filter:                      486  (0.0271069); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.43u 0.29s 00:00:00.72 Elapsed: 00:00:00.45
# Mc/sec: 1013.09
//
Query:       KOO22047.1  [L=335]
Description: hypothetical protein Ctob_001050 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.1e-11   45.4   0.0    0.00054   20.7   0.0    3.2  3  Filamin     Filamin/ABP280 repeat
    1.7e-07   31.4   0.0    2.7e-05   24.4   0.0    2.3  2  Invasin_D3  Invasin, domain 3


Domain annotation for each model (and alignments):
>> Filamin  Filamin/ABP280 repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.4   0.0     0.031   2.8e+02      72     102 ..      10      46 ..       3      47 .. 0.85
   2 !   19.2   0.0   1.9e-07    0.0017      18     101 ..     104     187 ..      34     189 .. 0.61
   3 !   20.7   0.0     6e-08   0.00054      21      98 ..     226     295 ..     207     297 .. 0.72

  Alignments for each domain:
  == domain 1  score: 2.4 bits;  conditional E-value: 0.031
                 SEEEEEE--SSSCEEEEEEEETT......CE-TTSSE CS
     Filamin  72 gtytvsYtpeepgtyrvsvkldg......khiggsPf 102
                   y++ Y+++++g++ +++  d       k  +gsPf
  KOO22047.1  10 DQYQIWYNAQQAGDFALHLWTDSvaggkrKLLPGSPF 46 
                 469***************9998877788889999998 PP

  == domain 2  score: 19.2 bits;  conditional E-value: 1.9e-07
                 ETTS-EEEEEEESSSTSCCCSTTS...EEEEE....ESSTS.....EEEEEEEE-SSSEEEEEE--SSSCEEEEEEEETTCE-TTSS CS
     Filamin  18 vagesltFtvytkdakgeksevgg.delqvriv..tgsphgaatkssvkievvdnedgtytvsYtpeepgtyrvsvkldgkhiggsP 101
                 vag++l+   +++d+ g+ s  +  +++   ++  tg ++g ++  +v+ + + ++ g+y+v+  ++++g +r+s+ ldg+h+g+ P
  KOO22047.1 104 VAGDKLQLFPQLRDEFGNASFASDqSPFVAFVEhlTGAESGTRN--DVPLK-QLRDLGKYEVTQELTKCGLHRLSILLDGQHVGQVP 187
                 44455555555554444444333223333222122333333311..33332.223348**************************988 PP

  == domain 3  score: 20.7 bits;  conditional E-value: 6e-08
                 S-EEEEEEESSSTSCCCSTTS..EEEEE..ESSTS.....EEEEEEEE-SSSEEEEEE--SSSCEEEEEEEETTCE-T CS
     Filamin  21 esltFtvytkdakgeksevggdelqvrivtgsphgaatkssvkievvdnedgtytvsYtpeepgtyrvsvkldgkhig 98 
                    t t +t d+ g+++ +gg  +  r    +  g+      +i vvd +dgty  s+ ++ +g+++v v+ld+ + +
  KOO22047.1 226 STCTLTLETFDKFGNRMNKGGATIAART--VGT-GC-----SPITVVDGKDGTYSLSFSCSIVGECKVVVRLDNVEMP 295
                 4446666666776776666655555444..333.44.....5899****************************98765 PP

>> Invasin_D3  Invasin, domain 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.8   0.0    0.0038        34      24      84 ..     111     182 ..      97     189 .. 0.72
   2 !   24.4   0.0   3.1e-09   2.7e-05      19      94 ..     225     302 ..     212     304 .. 0.87

  Alignments for each domain:
  == domain 1  score: 4.8 bits;  conditional E-value: 0.0038
  Invasin_D3  24 ltvtlkDangnp..vsglt..vtfstt....sagtlsavt..dngd.GtytatLtattagtatitptvnGva 84 
                 l  +l+D++gn+  +s ++  v+f       ++gt ++v   +  d G y++t   t+ g   ++  ++G+ 
  KOO22047.1 111 LFPQLRDEFGNAsfASDQSpfVAFVEHltgaESGTRNDVPlkQLRDlGKYEVTQELTKCGLHRLSILLDGQH 182
                 55689*******987777779999977434444455554443555579999999889999999999999944 PP

  == domain 2  score: 24.4 bits;  conditional E-value: 3.1e-09
  Invasin_D3  19 kststltvtlkDangnp..vsgltvtfsttsag.tlsavtdngdGtytatLtattagtatitptvnGvaiaatatvtlt 94 
                 +st tlt+   D++gn    +g+t++  t  +g +  +v d +dGty+  ++ + +g+ ++ + +++ +   + tv ++
  KOO22047.1 225 HSTCTLTLETFDKFGNRmnKGGATIAARTVGTGcSPITVVDGKDGTYSLSFSCSIVGECKVVVRLDN-VEMPSLTVGFV 302
                 7999*************86677999999888888888999***********99************98.44666677766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (335 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       401  (0.022366); expected 358.6 (0.02)
Passed bias filter:                      378  (0.0210832); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.48u 0.25s 00:00:00.73 Elapsed: 00:00:00.43
# Mc/sec: 2341.47
//
Query:       KOO22048.1  [L=236]
Description: hypothetical protein Ctob_001063, partial [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
     0.0073   16.3   0.2      0.036   14.1   0.0    2.2  3  LRR_6     Leucine Rich repeat
  ------ inclusion threshold ------
        0.2   11.1   0.0       0.27   10.7   0.0    1.1  1  LRR_9     Leucine-rich repeat


Domain annotation for each model (and alignments):
>> LRR_6  Leucine Rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   0.0       1.7   1.5e+04      16      24 .]     158     166 ..     158     166 .. 0.86
   2 !   14.1   0.0     4e-06     0.036       4      24 .]     174     194 ..     172     194 .. 0.92
   3 ?   -1.5   0.0      0.42   3.7e+03       5      14 ..     205     214 ..     204     214 .. 0.90

  Alignments for each domain:
  == domain 1  score: -3.4 bits;  conditional E-value: 1.7
       LRR_6  16 gDeGaeaLa 24 
                 +D+ aea+a
  KOO22048.1 158 TDADAEAFA 166
                 699999997 PP

  == domain 2  score: 14.1 bits;  conditional E-value: 4e-06
       LRR_6   4 hLteLdLsgNdIgDeGaeaLa 24 
                  +++LdLs N+Ig  G+ aLa
  KOO22048.1 174 RVETLDLSANEIGTRGIAALA 194
                 579****************98 PP

  == domain 3  score: -1.5 bits;  conditional E-value: 0.42
       LRR_6   5 LteLdLsgNd 14 
                 L++ d ++Nd
  KOO22048.1 205 LKKFDFTDND 214
                 8999****97 PP

>> LRR_9  Leucine-rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0     3e-05      0.27      20      77 ..     127     186 ..     115     220 .. 0.77

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 3e-05
       LRR_9  20 rereldlrgykipvienlGatld.qfdtidlsdndirkldg.fPllkrlktlllnnnriv 77 
                  + e+  r y  ++   lG + d +f  ++ +d d   +   +Pll+r++tl l+ n i 
  KOO22048.1 127 SDCEVVARLYADAICAALGEARDlKFSGLEWTDADAEAFAKvLPLLRRVETLDLSANEIG 186
                 5678888999999999***999978***********9986438*************9984 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (236 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       328  (0.0182944); expected 358.6 (0.02)
Passed bias filter:                      306  (0.0170673); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.42u 0.24s 00:00:00.65 Elapsed: 00:00:00.41
# Mc/sec: 1731.16
//
Query:       KOO22049.1  [L=567]
Description: hypothetical protein Ctob_001062 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
     0.0021   18.5   0.1       0.12   12.8   0.0    2.4  2  Lipase_GDSL_2  GDSL-like Lipase/Acylhydrolase family


Domain annotation for each model (and alignments):
>> Lipase_GDSL_2  GDSL-like Lipase/Acylhydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    3.1   0.0    0.0063   1.1e+02     115     147 ..     422     454 ..     374     476 .. 0.80
   2 !   12.8   0.0   6.4e-06      0.12     117     156 ..     486     524 ..     475     540 .. 0.76

  Alignments for each domain:
  == domain 1  score: 3.1 bits;  conditional E-value: 0.0063
                    TTT-TTSTCCHHHHHHHHHHHHHHHHHHCT-EE CS
  Lipase_GDSL_2 115 tpeaaadarelnaviaaynealrevaaeegvpf 147
                      e+a++ r+++  +++y  +l+++a+++g ++
     KOO22049.1 422 AQEPAPPGRYARTLRERYLSVLQDAARRYGTHL 454
                    566778888899****************99886 PP

  == domain 2  score: 12.8 bits;  conditional E-value: 6.4e-06
                    T-TTSTCCHHHHHHHHHHHHHHHHHHCT-EEE-HHHHHHH CS
  Lipase_GDSL_2 117 eaaadarelnaviaaynealrevaaeegvpfvDlhdalad 156
                    ++a ++r+   v+++yn+++r+++a+  +p++D+++++ +
     KOO22049.1 486 PTARERRY-PHVLREYNRLARQACAALRIPYLDMWEIALP 524
                    44444444.889**********************877655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (567 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       325  (0.0181271); expected 358.6 (0.02)
Passed bias filter:                      224  (0.0124937); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.52u 0.26s 00:00:00.78 Elapsed: 00:00:00.43
# Mc/sec: 3980.79
//
Query:       KOO22050.1  [L=160]
Description: hypothetical protein Ctob_001048, partial [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (160 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       385  (0.0214736); expected 358.6 (0.02)
Passed bias filter:                      300  (0.0167327); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.25s 00:00:00.62 Elapsed: 00:00:00.39
# Mc/sec: 1227.34
//
Query:       KOO22051.1  [L=126]
Description: conserved unknown protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.6e-08   34.3   3.2    3.1e-08   34.0   3.2    1.1  1  FA_hydroxylase  Fatty acid hydroxylase superfamily


Domain annotation for each model (and alignments):
>> FA_hydroxylase  Fatty acid hydroxylase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.0   3.2   1.8e-12   3.1e-08      61     133 .]       5      75 ..       1      75 [. 0.83

  Alignments for each domain:
  == domain 1  score: 34.0 bits;  conditional E-value: 1.8e-12
  FA_hydroxylase  61 llllllg.plsalllvlvlaallelliHsglhvslgwllerllatpraHrlHHskneegnfgvllslwDrlfgT 133
                     ++++ +g +  a+ +++ ++al + ++H+g++v++++l+  +  + r H+ HH+k + +n++++  +wDr++g+
      KOO22051.1   5 IVAFTAGlHVAAVGAHFGFKALGACFNHTGYDVRVTFLG--IDYSVRSHETHHRKPT-TNYAQYVMFWDRIMGS 75 
                     444445567777777***************777777775..789************9.**************95 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (126 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       379  (0.0211389); expected 358.6 (0.02)
Passed bias filter:                      271  (0.0151152); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.26s 00:00:00.62 Elapsed: 00:00:00.39
# Mc/sec: 959.64
//
Query:       KOO22052.1  [L=177]
Description: hypothetical protein Ctob_001057 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.017   15.2   3.6      0.076   13.1   0.3    2.4  2  GPR_Gpa2_C  G protein-coupled glucose receptor regulating Gpa


Domain annotation for each model (and alignments):
>> GPR_Gpa2_C  G protein-coupled glucose receptor regulating Gpa2 C-term
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.3   4.2e-06     0.076       7      69 ..      13      80 ..       9      84 .. 0.86
   2 ?    2.7   0.2    0.0077   1.4e+02      23      51 ..     126     154 ..     110     166 .. 0.75

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 4.2e-06
  GPR_Gpa2_C  7 ierqlrsifiYPlaYiilwlfPfvahvlqydye.....lkekpviwllvvaavvqplnglVDtlvfll 69
                ++  +r+i   P + +++ ++  ++ + q++        +    +wl   aav  +l g+VD +v++l
  KOO22052.1 13 LHEVMRTIVFNPASALVVVIAAALMRRSQMSLAallnpWEVSLLVWLSGYAAVRVALLGFVDGVVWFL 80
                6778***********************999976555444677789********************998 PP

  == domain 2  score: 2.7 bits;  conditional E-value: 0.0077
  GPR_Gpa2_C  23 ilwlfPfvahvlqydyelkekpviwllvv 51 
                 +lw +Pf++ + +    l+ +  +wll+v
  KOO22052.1 126 LLWHAPFIVRAPELLGLLNGPLAFWLLLV 154
                 69******999888744455556777655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (177 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       417  (0.0232584); expected 358.6 (0.02)
Passed bias filter:                      257  (0.0143343); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.23s 00:00:00.61 Elapsed: 00:00:00.38
# Mc/sec: 1394.51
//
Query:       KOO22053.1  [L=636]
Description: camp protein kinase regulatory chain [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    5.4e-08   32.4  25.0    3.4e-06   26.5   8.6    2.6  2  Zip           ZIP Zinc transporter
    1.7e-05   24.8   0.0     0.0086   16.1   0.0    2.5  2  cNMP_binding  Cyclic nucleotide-binding domain


Domain annotation for each model (and alignments):
>> Zip  ZIP Zinc transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.1   8.2   1.9e-05      0.17     241     332 ..      25     109 ..      20     110 .. 0.88
   2 !   26.5   8.6   3.8e-10   3.4e-06     157     307 ..     454     608 ..     427     627 .. 0.77

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 1.9e-05
         Zip 241 srkkavllnllfaltaplGiliGilvrsisessgaeivsgillalsaGtflYvalvellphEllnekgssslkqsllqllglllGfalmlll 332
                 ++  a  + l++al+ ++G++iGi+      ++   +v++ ++a+ +G ++   + el    +++++++++++ +l ++++ ++G +++++l
  KOO22053.1  25 NMGVACGWGLVSALSLIIGAAIGIV------AKPGPMVTSGMMAFGGGALIEALTIELFG-AIMHHQEEDGIGGTLIAIAAAVFGGVFFSAL 109
                 566677889****************......88888999999*****************8.788888899**********999998888766 PP

  == domain 2  score: 26.5 bits;  conditional E-value: 3.8e-10
         Zip 157 ngkqeksesekeqaseeedkeklaslkvraiilllglilHsfidGLAlG.vsssss..tgislfiAvllHelpeelglgaiLlkaglsrkkavllnllf 252
                 ++ ++ +e+ +e+   e+ + +  + k +ai++ lg++l+ +++ + lG +++  +  ++i+ ++ v+l +lpe+++  ai+ + g++++ ++l+ ++ 
  KOO22053.1 454 RSRENLEEQLHEH--VEDAHGNGGNGKNAAIMIWLGIGLDGIPESFVLGiLANAGDmpSLITFVVGVFLANLPEAMSSSAIMSSYGMKSRVIMLMWTAI 550
                 3333333444444..5677888999999*********************95554432288999999***************************999999 PP

         Zip 253 altaplGiliGilvrs....isessgaeivsgillalsaGtflYvalvellphEllnek 307
                  +++ +G+++G l        + s g +++ + ++++ +G +l +    +lp E  ++ 
  KOO22053.1 551 FIGTGIGAGLGALAFPpvgpEGRSDGIKMTIAGIEGMCGGAMLTMIASTVLP-EAFEHG 608
                 999999999999944497666666666777788999*********9999999.766655 PP

>> cNMP_binding  Cyclic nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.0   0.0    0.0013        12      20      68 ..     195     253 ..     188     258 .. 0.67
   2 !   16.1   0.0   9.6e-07    0.0086       3      89 .]     262     343 ..     261     343 .. 0.89

  Alignments for each domain:
  == domain 1  score: 6.0 bits;  conditional E-value: 0.0013
                   EEEEEES-EEEE..........EEETTS.EEEEE.....EE-TTEEESHHHHHHTS--SSEEEE CS
  cNMP_binding  20 lyivlsGevrvy..........rlsedgkevvla.....vlgpGdlfGelalltgeprtatvvA 68 
                   +++vl+G+vrv+          ++++d      +     +l++  +fG+++ll g   ++ v++
    KOO22053.1 195 IFFVLRGSVRVTmyqdedtdpsATAADT-----RpredfYLSKDRIFGDVGLLSGIAAACEVTT 253
                   79*********75444444443333333.....1333447899999999999987777777665 PP

  == domain 2  score: 16.1 bits;  conditional E-value: 9.6e-07
                   EE-TT-EEE-TTSB-SEEEEEEES-EEEEEEETTS.EEEEEEE-TTEEESHHHHHHTS--SSEEEESSTEEEEEEEHHHHHHHHHH- CS
  cNMP_binding   3 sfkagevifrqGdpadslyivlsGevrvyrlsedgkevvlavlgpGdlfGelalltgeprtatvvAltdsellalprddflellqqd 89 
                   ++++g+v+f++ d    + ++l G v + +l++         ++++d++G    ++g+     +v++ +s++l + r+d+++l +++
    KOO22053.1 262 EVSKGDVLFEAIDDKSPMVLILLGIVDL-KLNATTS----SAFRANDILGLHHYIYGQELRVEAVVRVPSTILTIARADLDRLTAKH 343
                   5799********9999************.3444443....4799**************************************98875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (636 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       650  (0.0362541); expected 358.6 (0.02)
Passed bias filter:                      472  (0.0263261); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.64u 0.29s 00:00:00.93 Elapsed: 00:00:00.49
# Mc/sec: 3931.31
//
Query:       KOO22054.1  [L=83]
Description: hypothetical protein Ctob_001051 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (83 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       658  (0.0367003); expected 358.6 (0.02)
Passed bias filter:                      442  (0.0246528); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.30s 00:00:00.67 Elapsed: 00:00:00.45
# Mc/sec: 557.54
//
Query:       KOO22055.1  [L=114]
Description: hypothetical protein Ctob_001061 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (114 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       946  (0.0527637); expected 358.6 (0.02)
Passed bias filter:                      616  (0.0343577); expected 358.6 (0.02)
Passed Vit filter:                        55  (0.00306766); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.25s 00:00:00.63 Elapsed: 00:00:00.38
# Mc/sec: 889.45
//
Query:       KOO22056.1  [L=1310]
Description: calmodulin [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.2e-22   77.7   0.5    0.00047   19.5   0.0    4.4  4  EF-hand_1  EF hand
    1.5e-19   68.2   1.0    0.00088   19.0   0.0    4.5  4  EF-hand_6  EF-hand domain
      4e-18   64.0   2.6      0.005   16.3   0.2    4.5  4  EF-hand_5  EF hand
    1.5e-14   54.2   0.1    2.1e-06   28.1   0.0    3.2  3  EF-hand_7  EF-hand domain pair
    1.6e-09   37.4   2.9      0.017   14.9   0.2    4.4  4  EF-hand_8  EF-hand domain pair


Domain annotation for each model (and alignments):
>> EF-hand_1  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.0   1.6e-06    0.0059       1      26 [.     560     585 ..     560     587 .. 0.93
   2 !   18.6   0.1   2.5e-07   0.00091       1      28 [.     603     630 ..     603     631 .. 0.91
   3 !   19.5   0.0   1.3e-07   0.00047       1      27 [.     649     675 ..     649     677 .. 0.92
   4 !   18.6   0.1   2.6e-07   0.00094       3      24 ..     694     715 ..     692     720 .. 0.90

  Alignments for each domain:
  == domain 1  score: 16.1 bits;  conditional E-value: 1.6e-06
                 HHHHHHHHHTTTSSSEEEHHHHHHHH CS
   EF-hand_1   1 elkeiFrefDkDgdGkIdfeEfkell 26 
                 el+++F  +D+Dg+G ++ +E+ +++
  KOO22056.1 560 ELRRLFHSIDTDGSGVVSSKEWGKAI 585
                 799*******************9875 PP

  == domain 2  score: 18.6 bits;  conditional E-value: 2.5e-07
                 HHHHHHHHHTTTSSSEEEHHHHHHHHHH CS
   EF-hand_1   1 elkeiFrefDkDgdGkIdfeEfkellkk 28 
                 e+ ++F+++D Dg+G +++ Ef ++l+ 
  KOO22056.1 603 EVGQMFKKLDADGSGDLTWGEFETALQQ 630
                 5679*******************99976 PP

  == domain 3  score: 19.5 bits;  conditional E-value: 1.3e-07
                 HHHHHHHHHTTTSSSEEEHHHHHHHHH CS
   EF-hand_1   1 elkeiFrefDkDgdGkIdfeEfkellk 27 
                 elk +++ +Dk+gdGk++ +E+ +++ 
  KOO22056.1 649 ELKALWDRLDKNGDGKVSGKEWGSAVH 675
                 799*******************99986 PP

  == domain 4  score: 18.6 bits;  conditional E-value: 2.6e-07
                 HHHHHHHTTTSSSEEEHHHHHH CS
   EF-hand_1   3 keiFrefDkDgdGkIdfeEfke 24 
                  ++F+++D Dg+G ++++Ef++
  KOO22056.1 694 GKMFSKIDADGSGDLTWDEFVN 715
                 58******************97 PP

>> EF-hand_6  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.0   0.0   2.4e-07   0.00088       1      28 [.     560     587 ..     560     597 .. 0.90
   2 !   15.9   0.0   2.5e-06    0.0089       4      28 ..     606     630 ..     603     638 .. 0.90
   3 !   15.8   0.0   2.6e-06    0.0095       1      27 [.     649     675 ..     649     686 .. 0.90
   4 !   12.4   0.1   3.4e-05      0.12       4      24 ..     695     715 ..     693     716 .. 0.91

  Alignments for each domain:
  == domain 1  score: 19.0 bits;  conditional E-value: 2.4e-07
   EF-hand_6   1 elreaFklfDkdgdGkidaeElrkalrk 28 
                 elr++F+ +D+dg+G ++ +E+ ka+ +
  KOO22056.1 560 ELRRLFHSIDTDGSGVVSSKEWGKAIGQ 587
                 79**********************9975 PP

  == domain 2  score: 15.9 bits;  conditional E-value: 2.5e-06
   EF-hand_6   4 eaFklfDkdgdGkidaeElrkalrk 28 
                 + Fk++D dg+G +++ E+  al++
  KOO22056.1 606 QMFKKLDADGSGDLTWGEFETALQQ 630
                 68*********************95 PP

  == domain 3  score: 15.8 bits;  conditional E-value: 2.6e-06
   EF-hand_6   1 elreaFklfDkdgdGkidaeElrkalr 27 
                 el+++++ +Dk+gdGk++ +E+ +a  
  KOO22056.1 649 ELKALWDRLDKNGDGKVSGKEWGSAVH 675
                 68999*****************99876 PP

  == domain 4  score: 12.4 bits;  conditional E-value: 3.4e-05
   EF-hand_6   4 eaFklfDkdgdGkidaeElrk 24 
                 + F ++D dg+G ++++E+++
  KOO22056.1 695 KMFSKIDADGSGDLTWDEFVN 715
                 68*****************75 PP

>> EF-hand_5  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.0   2.3e-06    0.0082       1      23 [.     561     583 ..     561     585 .. 0.89
   2 !   13.9   0.1   7.8e-06     0.028       3      23 ..     606     626 ..     604     628 .. 0.90
   3 !   14.7   0.0   4.3e-06     0.015       7      22 ..     656     671 ..     650     675 .. 0.87
   4 !   16.3   0.2   1.4e-06     0.005       2      21 ..     694     713 ..     693     718 .. 0.91

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 2.3e-06
                 HHHHHHHH-SS-SSCE-HHHHHH CS
   EF-hand_5   1 lkdtFqaiDlNgDGkIskeELkt 23 
                 l+ +F  iD++g+G +s  E+ +
  KOO22056.1 561 LRRLFHSIDTDGSGVVSSKEWGK 583
                 5678****************965 PP

  == domain 2  score: 13.9 bits;  conditional E-value: 7.8e-06
                 HHHHHH-SS-SSCE-HHHHHH CS
   EF-hand_5   3 dtFqaiDlNgDGkIskeELkt 23 
                 ++F+++D++g+G ++  E++t
  KOO22056.1 606 QMFKKLDADGSGDLTWGEFET 626
                 68*****************98 PP

  == domain 3  score: 14.7 bits;  conditional E-value: 4.3e-06
                 HH-SS-SSCE-HHHHH CS
   EF-hand_5   7 aiDlNgDGkIskeELk 22 
                 ++D+NgDGk+s  E+ 
  KOO22056.1 656 RLDKNGDGKVSGKEWG 671
                 79************96 PP

  == domain 4  score: 16.3 bits;  conditional E-value: 1.4e-06
                 HHHHHHH-SS-SSCE-HHHH CS
   EF-hand_5   2 kdtFqaiDlNgDGkIskeEL 21 
                  ++F++iD++g+G ++ +E+
  KOO22056.1 694 GKMFSKIDADGSGDLTWDEF 713
                 689****************9 PP

>> EF-hand_7  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.0   0.0   0.00013      0.45      42      65 ..     557     580 ..     543     585 .. 0.75
   2 !   21.9   0.0   5.1e-08   0.00018       3      70 ..     560     628 ..     558     629 .. 0.81
   3 !   28.1   0.0   5.8e-10   2.1e-06       3      67 ..     649     714 ..     647     716 .. 0.88

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00013
   EF-hand_7  42 sdeelellfkefDtdkdGvisfdE 65 
                  + el++lf+ +Dtd++Gv+s  E
  KOO22056.1 557 GKAELRRLFHSIDTDGSGVVSSKE 580
                 346799*************99655 PP

  == domain 2  score: 21.9 bits;  conditional E-value: 5.1e-08
   EF-hand_7   3 klkeaFkelDtdgdgyldkeellrllrkifqga....gegsklsdeelellfkefDtdkdGvisfdEFlkly 70 
                 +l++ F ++Dtdg+g ++  e  +++    q++    +    l+  e+ ++fk++D d++G +++ EF+++ 
  KOO22056.1 560 ELRRLFHSIDTDGSGVVSSKEWGKAIG---QHWklmgRFFGGLTIGEVGQMFKKLDADGSGDLTWGEFETAL 628
                 7999*****************997444...4555566333445667899*******************9986 PP

  == domain 3  score: 28.1 bits;  conditional E-value: 5.8e-10
   EF-hand_7   3 klkeaFkelDtdgdgyldkeellrllrkifqga...gegsklsdeelellfkefDtdkdGvisfdEFl 67 
                 +lk  ++ lD++gdg+++  e  ++++k+ q       g++l    + ++f ++D d++G +++dEF+
  KOO22056.1 649 ELKALWDRLDKNGDGKVSGKEWGSAVHKNQQVMakyFGGKDLKG--IGKMFSKIDADGSGDLTWDEFV 714
                 68889*******************99998888887655555555..99*******************8 PP

>> EF-hand_8  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.5   0.0    0.0021       7.5      25      47 ..     558     580 ..     555     580 .. 0.87
   2 !   10.1   0.1   0.00016      0.58      27      48 ..     603     624 ..     590     630 .. 0.81
   3 ?    2.5   0.0     0.038   1.3e+02      25      45 ..     647     667 ..     637     669 .. 0.82
   4 !   14.9   0.2   4.8e-06     0.017      31      50 ..     696     715 ..     693     717 .. 0.95

  Alignments for each domain:
  == domain 1  score: 6.5 bits;  conditional E-value: 0.0021
   EF-hand_8  25 eeevdilfrefDtdgdGkisfeE 47 
                 + e++ lf  +Dtdg+G++s +E
  KOO22056.1 558 KAELRRLFHSIDTDGSGVVSSKE 580
                 6788899************9776 PP

  == domain 2  score: 10.1 bits;  conditional E-value: 0.00016
   EF-hand_8  27 evdilfrefDtdgdGkisfeEF 48 
                 ev  +f+++D dg+G +++ EF
  KOO22056.1 603 EVGQMFKKLDADGSGDLTWGEF 624
                 6667*****************9 PP

  == domain 3  score: 2.5 bits;  conditional E-value: 0.038
   EF-hand_8  25 eeevdilfrefDtdgdGkisf 45 
                 + e+ +l +++D +gdGk+s 
  KOO22056.1 647 AAELKALWDRLDKNGDGKVSG 667
                 5677788899*********95 PP

  == domain 4  score: 14.9 bits;  conditional E-value: 4.8e-06
   EF-hand_8  31 lfrefDtdgdGkisfeEFcv 50 
                 +f+++D dg+G ++++EF++
  KOO22056.1 696 MFSKIDADGSGDLTWDEFVN 715
                 9*****************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1310 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1420  (0.0792013); expected 358.6 (0.02)
Passed bias filter:                      525  (0.0292822); expected 358.6 (0.02)
Passed Vit filter:                        59  (0.00329076); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.94u 0.32s 00:00:01.26 Elapsed: 00:00:00.48
# Mc/sec: 8190.41
//
Query:       KOO22057.1  [L=632]
Description: protein kinase a catalytic [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    3.7e-58  197.0   0.0      5e-58  196.5   0.0    1.1  1  Pkinase       Protein kinase domain
    2.2e-27   96.0   0.0      3e-27   95.5   0.0    1.1  1  Pkinase_Tyr   Protein tyrosine kinase
    2.6e-05   23.7   0.0    6.6e-05   22.4   0.0    1.5  2  Kinase-like   Kinase-like
  ------ inclusion threshold ------
      0.022   13.8   0.5      0.075   12.1   0.5    1.8  1  Seadorna_VP7  Seadornavirus VP7


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  196.5   0.0   1.1e-61     5e-58       4     207 ..     282     483 ..     279     529 .. 0.87

  Alignments for each domain:
  == domain 1  score: 196.5 bits;  conditional E-value: 1.1e-61
                 EEEEEEESSEEEEEEEETTTTEEEEEEEEECHCHCHHHH.HHHHHHHHHHHHHSCTTB--EEEEEEESSEEEEEEE--TTEBHHHHHHHHSS--HHHHH CS
     Pkinase   4 leklGeGsfGkVykaveketgkivAvKkikkekakkkke.kkvlrEikilkklkhpnivrlyevfeekdelylvleyveggeladllerkgslseeeak 101
                 ++ lG+G+f++V+ +++ketg  +A+K+i k+   kk++ ++vl+E + l    hp ivrly++f++ ++ly+ +e++ gge++ l+e+  +++e  +k
  KOO22057.1 282 VKFLGSGAFANVFMCRHKETGTLMALKCILKSVVVKKNKvHQVLAEKEALSCAAHPCIVRLYGTFSDAQHLYFAMELAIGGEIFALIEELEMIPEPAVK 380
                 678****************************999998888************************************************9999******* PP

                 HHHHHHHHHHHHHHHTTEE-SS-SGGGEEEETTTEEEE-SGTTSEESSSSCSBCTTTSCGGGS-HHHHTTSCBSHHHHHHHHHHHHHHHHHSS-STTTS CS
     Pkinase 102 kiakqilegleylHskgiiHrDlKpeNiLidekgelKitDFGlakelessskltsfvgtseYlAPEvlkeneyskkvDvWslGvilyelltgkppfsge 200
                  +a  ++ +l +lH++g+i+rDlKpeN+L+d +g lK++D+Gla + e+s   +++vgt++YlAPEvl++++ +k++D+W+lGv+++e+l+g+ pf++ 
  KOO22057.1 381 YYAGAVMLALGHLHHAGFIYRDLKPENLLLDVRGYLKVCDLGLAMRTEHS---MTVVGTPQYLAPEVLRAEGATKAADWWALGVLVFEMLNGELPFNSA 476
                 *********************************************99996...5*******************************************87 PP

                 SHHHHHH CS
     Pkinase 201 kgkekve 207
                 +g+++  
  KOO22057.1 477 DGSDRSL 483
                 7776433 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   95.5   0.0   6.7e-31     3e-27       5     221 ..     283     490 ..     279     504 .. 0.88

  Alignments for each domain:
  == domain 1  score: 95.5 bits;  conditional E-value: 6.7e-31
                  EEEEEESSEEEEEEEEETTTTSSEEEEEEEEESTTSSHHHHHHHHHHHHHHHTS-BTTB--EEEEEESSSSEEEEEE--TTEBHHHHHHHTCTTTSBH CS
  Pkinase_Tyr   5 kklGeGafGkVvegtlkgekekkevkVavKtlkeeateeekeelleeakimkklkhpnivkllgvctkeepllivteyvkgGdLlkfLrkkekekltl 102
                  k lG+Gaf++V++++ k++ +   +k+++K++    ++++ +++l e + ++   hp iv+l+g  +++++l++ +e++ gG++   +++   e +  
   KOO22057.1 283 KFLGSGAFANVFMCRHKETGTLMALKCILKSV--VVKKNKVHQVLAEKEALSCAAHPCIVRLYGTFSDAQHLYFAMELAIGGEIFALIEEL--EMIPE 376
                  77***************888888888888888..455566799*******************************************99997..88999 PP

                  HHHHHHHHHHHHHHHHHHHTTEEEST-SGGGEEEEETTEEEE-STTTHEETTTSSEEEETTSSTSGGGGS-HHHHHHSEEEHHHHHHHHHHHHHHHHT CS
  Pkinase_Tyr 103 kdllsfalqvAkGmeyLeskklvHrdlaarNvLlsenkvvkisDfGLardiekddeyvkkeeaklpvkWmapEslkekkftsksDvWsfGvllwEift 200
                    +  +a  v  ++ +L++  ++ rdl   N Ll+ +   k++D GLa ++      +++ +     +++apE+l+++  t+++D W+ Gvl++E+++
   KOO22057.1 377 PAVKYYAGAVMLALGHLHHAGFIYRDLKPENLLLDVRGYLKVCDLGLAMRT------EHSMTVVGTPQYLAPEVLRAEGATKAADWWALGVLVFEMLN 468
                  99999999*****************************************99......44445556789*****************************9 PP

                  TSSGTTTTS..HHHHHHHHHHTT CS
  Pkinase_Tyr 201 lgespypgl..kneevleklkeg 221
                   ge p+++   +++++++++k+g
   KOO22057.1 469 -GELPFNSAdgSDRSLFAAIKRG 490
                  .****998854555566666665 PP

>> Kinase-like  Kinase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.0      0.84   3.7e+03      16      46 ..     281     311 ..     274     324 .. 0.81
   2 !   22.4   0.0   1.5e-08   6.6e-05     158     253 ..     391     476 ..     380     490 .. 0.89

  Alignments for each domain:
  == domain 1  score: -3.1 bits;  conditional E-value: 0.84
  Kinase-like  16 rgellkkgdrsvvfevkdqetgeplavkvfl 46 
                   ++ l+ g +  vf  + +etg  +a+k  l
   KOO22057.1 281 PVKFLGSGAFANVFMCRHKETGTLMALKCIL 311
                  577899999999999*****99999998655 PP

  == domain 2  score: 22.4 bits;  conditional E-value: 1.5e-08
  Kinase-like 158 anLqakglvhgkftvdnllldekgglmlggftaLvragtkvvlsevekgfaPpEllgsrggytrknktkmthkldaWqlGlviyriwclklPltla 253
                   +L++ g +  +++++nllld +g l++ +++  +r  +++ +  +++ +aP  l+++ g          t + d W+lG+ ++ +   +lP++ a
   KOO22057.1 391 GHLHHAGFIYRDLKPENLLLDVRGYLKVCDLGLAMRTEHSMTVVGTPQYLAPEVLRAE-G---------ATKAADWWALGVLVFEMLNGELPFNSA 476
                  48****************************************99****9998777776.3.........47899******************9865 PP

>> Seadorna_VP7  Seadornavirus VP7
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.5   1.7e-05     0.075      71     191 ..     297     425 ..     289     439 .. 0.62

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 1.7e-05
  Seadorna_VP7  71 rlngnstlvkvkseiGdLflkkirslpinlndaly.knkysvlarvyGivkLknDnnyey.....GiilekCykirvlt..vniivaglkdLmdfhs 159
                   r+++  tl+++k+ +  +++kk +  ++  +++      +  + r+yG         + +     G i+    +  +++    +  ag   L   h 
    KOO22057.1 297 RHKETGTLMALKCILKSVVVKKNKVHQVLAEKEALsCAAHPCIVRLYGTFSDAQHLYFAMelaigGEIFALIEELEMIPepAVKYYAGAVMLALGHL 393
                   6667777777777777777777666666554444435667777777776654433222211111122333333333332002333567777888888 PP

  Seadorna_VP7 160 estnllhGDcnpenlmcDknGylklvDPvsLl 191
                    + + ++ D +penl+ D  Gylk+ D +  +
    KOO22057.1 394 HHAGFIYRDLKPENLLLDVRGYLKVCDLGLAM 425
                   8*************************987666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (632 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       432  (0.024095); expected 358.6 (0.02)
Passed bias filter:                      324  (0.0180713); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.57u 0.27s 00:00:00.84 Elapsed: 00:00:00.43
# Mc/sec: 4370.44
//
Query:       KOO22058.1  [L=98]
Description: hypothetical protein Ctob_001053 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (98 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       151  (0.00842211); expected 358.6 (0.02)
Passed bias filter:                      132  (0.00736237); expected 358.6 (0.02)
Passed Vit filter:                         6  (0.000334653); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.25s 00:00:00.60 Elapsed: 00:00:00.39
# Mc/sec: 749.86
//
Query:       KOO22059.1  [L=1697]
Description: wd repeat-containing protein 49-like protein, partial [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    9.4e-08   32.6  18.5       0.29   12.1   0.2    9.5 10  WD40           WD domain, G-beta repeat
     0.0021   16.9   0.0        1.3    7.7   0.0    2.3  2  Nucleoporin_N  Nup133 N terminal like


Domain annotation for each model (and alignments):
>> WD40  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.0      0.91   8.2e+03      26      38 .]     661     672 ..     648     672 .. 0.80
   2 ?    0.7   0.1      0.13   1.2e+03       9      38 .]     688     726 ..     678     726 .. 0.64
   3 ?    2.7   0.0      0.03   2.7e+02       7      34 ..     756     786 ..     749     790 .. 0.72
   4 !    6.4   0.0     0.002        18       5      38 .]     798     834 ..     794     834 .. 0.77
   5 ?    2.7   0.0      0.03   2.7e+02       2      37 ..     839     875 ..     838     876 .. 0.73
   6 !   12.1   0.2   3.2e-05      0.29       5      37 ..    1122    1157 ..    1118    1158 .. 0.79
   7 !    6.7   0.1    0.0016        14       8      37 ..    1235    1271 ..    1228    1272 .. 0.86
   8 ?    0.7   0.1      0.12   1.1e+03      13      37 ..    1343    1371 ..    1336    1371 .. 0.72
   9 ?    3.4   0.1     0.018   1.6e+02       9      38 .]    1392    1424 ..    1386    1424 .. 0.67
  10 ?   -2.1   0.0      0.97   8.7e+03      22      35 ..    1531    1544 ..    1526    1546 .. 0.77

  Alignments for each domain:
  == domain 1  score: -2.0 bits;  conditional E-value: 0.91
                 EEEETTSEEEEEE CS
        WD40  26 asGsdDgtvriWd 38 
                 + G+ D++++++d
  KOO22059.1 661 L-GCVDRHLYLYD 672
                 3.888******98 PP

  == domain 2  score: 0.7 bits;  conditional E-value: 0.13
                 SSSS......E.EEEE....EETTSSEEEEEETTSEEEEEE CS
        WD40   9 GHss......v.tsla....fspdgawlasGsdDgtvriWd 38 
                 GH +      v t+l        +g+ la G++ g v iWd
  KOO22059.1 688 GH-WplpalcVpTCLTafldGKGHGK-LAIGDKEGAVTIWD 726
                 55.25667777788865444444444.577*99*******9 PP

  == domain 3  score: 2.7 bits;  conditional E-value: 0.03
                 EESS.SSEEEEE...EETTSSEEEEEETTSEE CS
        WD40   7 ltGH.ssvtsla...fspdgawlasGsdDgtv 34 
                  ++H ++vt l       +ga+l+s++ Dg +
  KOO22059.1 756 PKAHaDWVTQLTyttSLFSGALLSSAM-DGVI 786
                 3699888**997777777777786666.9988 PP

  == domain 4  score: 6.4 bits;  conditional E-value: 0.002
                 EEEESS.SSEEEEE...EETTSSEEEEEETTSEEEEEE CS
        WD40   5 rtltGH.ssvtsla...fspdgawlasGsdDgtvriWd 38 
                 r+l+GH ++v+ +a       g+ l+sG+  + +++W+
  KOO22059.1 798 RSLRGHtKGVYTIAmceAFGGGK-LVSGGLERDLYVWS 834
                 89****99999996665555555.568*99****9995 PP

  == domain 5  score: 2.7 bits;  conditional E-value: 0.03
                 EEEEEEESS.SSEEEEEEETTSSEEEEE.ETTSEEEEE CS
        WD40   2 qclrtltGH.ssvtslafspdgawlasG.sdDgtvriW 37 
                 ++l +l GH  +++ la ++d + ++s  s  g  r+W
  KOO22059.1 839 KPLAVLPGHrAPIRQLASDDDFQQVISLdS-LGAMRVW 875
                 68999****999****98888877764223.5555555 PP

  == domain 6  score: 12.1 bits;  conditional E-value: 3.2e-05
                  EEEE.SS..SSEEEEEEETTSSEEEEEETTSEEEEE CS
        WD40    5 rtlt.GH..ssvtslafspdgawlasGsdDgtvriW 37  
                  r  + +H   ++tsl+++  g+ l+sG  Dg+v  W
  KOO22059.1 1122 RCVRdAHggAPITSLSTDAPGRRLISGAHDGSVCTW 1157
                  55444996444****************88****988 PP

  == domain 7  score: 6.7 bits;  conditional E-value: 0.0016
                  ESS.SSEEEEEEETTSSE......EEEEETTSEEEEE CS
        WD40    8 tGH.ssvtslafspdgaw......lasGsdDgtvriW 37  
                    H ++v ++a +  +++      la+G+ Dg v +W
  KOO22059.1 1235 PSHtDDVLCMAHHAPSTLatapstLATGTADGVVALW 1271
                  579777****9999999999999999**99******* PP

  == domain 8  score: 0.7 bits;  conditional E-value: 0.12
                  EEEEEEETTSSE..........EEEEETTSEEEEE CS
        WD40   13 vtslafspdgaw..........lasGsdDgtvriW 37  
                  v ++       w          l++++ Dg + +W
  KOO22059.1 1343 VECV------CWlpsiapplvpLVAATTDGRLLVW 1371
                  7888......666666666666555666**99999 PP

  == domain 9  score: 3.4 bits;  conditional E-value: 0.018
                  SSSS....EEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40    9 GHss....vtslafspdgawlasGsdDgtvriWd 38  
                  GH++    v +l ++  ++ l+s++  gt+++W+
  KOO22059.1 1392 GHCDedalV-ALVTDELNTILVSADGGGTIKVWS 1424
                  673335643.5555555666999955*******5 PP

  == domain 10  score: -2.1 bits;  conditional E-value: 0.97
                  SSEEEEEETTSEEE CS
        WD40   22 gawlasGsdDgtvr 35  
                  ++++++G  Dgt  
  KOO22059.1 1531 SPLILTGAADGTTC 1544
                  678999*99*9965 PP

>> Nucleoporin_N  Nup133 N terminal like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.7   0.0    0.0003       2.7     200     231 ..     847     878 ..     827     888 .. 0.91
   2 !    7.7   0.0   0.00015       1.3     197     235 ..    1392    1430 ..    1371    1443 .. 0.83

  Alignments for each domain:
  == domain 1  score: 6.7 bits;  conditional E-value: 0.0003
                    -GG-EEEEEEECCTCEEEEEETTSEEEEEEEE CS
  Nucleoporin_N 200 ereeivqlridssrrilytlsskgvirvydls 231
                     r +i ql++d+  + +++l+s g +rv+dl 
     KOO22059.1 847 HRAPIRQLASDDDFQQVISLDSLGAMRVWDLR 878
                    5789**************************86 PP

  == domain 2  score: 7.7 bits;  conditional E-value: 0.00015
                     ----GG-EEEEEEECCTCEEEEEETTSEEEEEEEETTCE CS
  Nucleoporin_N  197 gasereeivqlridssrrilytlsskgvirvydlsasng 235 
                     g+++++++v+l+ d+   il++++ +g+i+v+ l++ + 
     KOO22059.1 1392 GHCDEDALVALVTDELNTILVSADGGGTIKVWSLTKLAA 1430
                     56899*****************************95544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1697 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       638  (0.0355848); expected 358.6 (0.02)
Passed bias filter:                      368  (0.0205254); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.92u 0.28s 00:00:01.20 Elapsed: 00:00:00.46
# Mc/sec: 11141.17
//
Query:       KOO22060.1  [L=242]
Description: hypothetical protein Ctob_000569 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.036   14.0   0.0       0.99    9.4   0.0    2.4  2  CusF_Ec   Copper binding periplasmic protein CusF
      0.056   13.4   0.0       0.12   12.3   0.0    1.5  1  PB1       PB1 domain


Domain annotation for each model (and alignments):
>> CusF_Ec  Copper binding periplasmic protein CusF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   0.0   0.00011      0.99       7      57 ..      91     138 ..      89     143 .. 0.88
   2 ?    1.9   0.0     0.025   2.3e+02      25      41 ..     164     180 ..     158     184 .. 0.85

  Alignments for each domain:
  == domain 1  score: 9.4 bits;  conditional E-value: 0.00011
                 ETTCTEEEEEE--BCCCTB-SEEEEEE--TTSEESS-STT-EEEEEEEEET CS
     CusF_Ec   7 daaagkvtlsHgpipalgwpaMtMdFkvadpallaglkaGdkVrFefekrd 57 
                 d ++g++ +++++i+a++      +F+v+ +++l +++ G+ V+F+++kr 
  KOO22060.1  91 DDDEGELAIDREDIEAVES---FGNFTVKVHVELPSISGGEIVSFRVTKRR 138
                 6688999999999999887...669***********************986 PP

  == domain 2  score: 1.9 bits;  conditional E-value: 0.025
                 B-SEEEEEE--TTSEES CS
     CusF_Ec  25 wpaMtMdFkvadpalla 41 
                  +aM M ++  d ++l+
  KOO22060.1 164 IGAMQMHYENHDGEMLE 180
                 489******99999986 PP

>> PB1  PB1 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   1.3e-05      0.12      15      72 ..     134     198 ..     124     211 .. 0.82

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 1.3e-05
                 EEEEGSSS-HHHHHHHHHHHHTST......CCSEEEEEEETTSSEEEESSHH.HHHHHHHHHHHT CS
         PB1  15 elsvssnisfeeLrakvekrfkls......dedvklkYpdedgdlVtitsDe.DLeealeearsl 72 
                 + + + ++sf+eL+  + +  +          +++ +Y++ dg+ +++t D+ ++ e ++ea+++
  KOO22060.1 134 VTKRRLGSSFDELYGVLLQGVPPGtlsleqIGAMQMHYENHDGEMLEVTRDStEMSELVSEAQAI 198
                 467788899999999999988888888888899******************86899999998876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (242 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       565  (0.0315132); expected 358.6 (0.02)
Passed bias filter:                      451  (0.0251548); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.41u 0.25s 00:00:00.65 Elapsed: 00:00:00.39
# Mc/sec: 1873.84
//
Query:       KOO22061.1  [L=300]
Description: cmp-sialic acid transporter 1-like protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.8e-42  145.0   9.1    3.8e-42  144.6   9.1    1.1  1  Nuc_sug_transp  Nucleotide-sugar transporter
    2.5e-05   23.8   4.2      0.026   13.9   2.8    2.3  2  TPT             Triose-phosphate Transporter family
    0.00047   20.3   2.8    0.00047   20.3   2.8    2.9  3  EamA            EamA-like transporter family
    0.00061   19.1   6.6    0.00068   19.0   5.1    1.8  2  PUNUT           Purine nucleobase transmembrane transport


Domain annotation for each model (and alignments):
>> Nuc_sug_transp  Nucleotide-sugar transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  144.6   9.1   8.4e-46   3.8e-42      23     310 ..      24     299 ..       7     300 .] 0.88

  Alignments for each domain:
  == domain 1  score: 144.6 bits;  conditional E-value: 8.4e-46
  Nuc_sug_transp  23 tlrYartkedkerylsttavllaeilklvvclllllkeekskvkkllrelkkeilakpkdtlklavPsliYtvqnnllyvalsnLdaatyqvtyq 117
                     +   ++  e +  yl+ ++ llae+ k+ ++l++ l+   s         +++i      +++ a P++iY v nnl +v l  ++++t+q+   
      KOO22061.1  24 ITSASKV-EGRYEYLQVSVTLLAELSKMALSLVMYLRLPPSVR------THQRIT--CGHLMQFATPAAIYFVNNNLVFVILAYVNSTTFQILSS 109
                     3333344.478899**************999988776555444......333333..4678899******************************* PP

  Nuc_sug_transp 118 lkilttalfsvllLkrklskkqWlslllLvaGvalvqlkqkeseesekaaaaakeensvlGliavlaacllsgfaGvYfekiLkdsnv...slWi 209
                     lk + t l+  ++Lkr l+  q l+++lL  G a+ ql+    +++       +++++ +Gl+  + +clls++ Gv+ e+++kd+++   s+ +
      KOO22061.1 110 LKTVFTGLLFRVMLKRPLTDVQSLAIVLLACGTAISQLSGGVCDATA------RTDSTAVGLACAVLTCLLSALGGVHSERLMKDGEHathSIHL 198
                     **************************************988875444......457788*************************98755569*** PP

  Nuc_sug_transp 210 rniqlallsiilalltvllkdgskisekGffkGydlvvwvvvllqavGGlvvavvvkyaDnilkgfatslaiilstvasvllldlkitllFllGa 304
                     +n+ l+l +i +  lt+l +dg+++    +++Gy+ vvw++v+++a+ Gl ++ v+ky+Dni++ fa + a++l+     +ll+ + t + ll a
      KOO22061.1 199 QNMLLYLWGIGFNSLTLLGADGARVLSGELLRGYTPVVWALVANNALNGLAISAVLKYTDNIVRVFAHAAAMLLTLGLENVLLGAEFTPQLLLSA 293
                     ****************************************************************************99****************9 PP

  Nuc_sug_transp 305 llviaa 310
                     ++v  a
      KOO22061.1 294 MVVACA 299
                     999765 PP

>> TPT  Triose-phosphate Transporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.9   2.8   5.8e-06     0.026     207     286 ..      63     142 ..      12     146 .. 0.79
   2 !    9.5   0.0   0.00013      0.56     131     183 ..     150     202 ..     142     263 .. 0.79

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 5.8e-06
         TPT 207 llkstkvslkevllllllsgvlfhlynqvaymvLervspvthsvantvKrvvvIvlsvlvfknpvsllnaiGtavaivGv 286
                  +++++  +   l++  + + +++++n++ + +L+ v+  t+ + +++K v+   l  +++k p++ ++++  ++  +G+
  KOO22061.1  63 SVRTHQRITCGHLMQFATPAAIYFVNNNLVFVILAYVNSTTFQILSSLKTVFTGLLFRVMLKRPLTDVQSLAIVLLACGT 142
                 444443335667889999999**********************************999*******999998887776665 PP

  == domain 2  score: 9.5 bits;  conditional E-value: 0.00013
         TPT 131 GvalasvtElsFnligfisAlisnltfslrnifsKkllkk.lkdldalnlfaii 183
                 Gv  a+++  + + +g+ +A+++ l ++l ++ s +l+k+ ++  ++++l++++
  KOO22061.1 150 GVCDATAR-TDSTAVGLACAVLTCLLSALGGVHSERLMKDgEHATHSIHLQNML 202
                 55545444.455789*************************65457777776665 PP

>> EamA  EamA-like transporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.4      0.41   1.8e+03      92     106 ..      12      26 ..      10      30 .. 0.85
   2 !   20.3   2.8     1e-07   0.00047      76     134 ..      86     144 ..      41     146 .. 0.90
   3 !    6.5   2.9     0.002         9       3     129 ..     164     297 ..     162     299 .. 0.75

  Alignments for each domain:
  == domain 1  score: -1.0 bits;  conditional E-value: 0.41
        EamA  92 snaslitslePvftl 106
                 + a+++++l+P++t 
  KOO22061.1  12 AAATVLMTLQPIITS 26 
                 67999*******996 PP

  == domain 2  score: 20.3 bits;  conditional E-value: 1e-07
        EamA  76 vlafllffyalkktsasnaslitslePvftlilsvlllgekltlkqllgivlillGvll 134
                 ++ + l f  l ++++++  +++sl  vft +l  + l+ +lt  q l+ivl  +G+++
  KOO22061.1  86 FVNNNLVFVILAYVNSTTFQILSSLKTVFTGLLFRVMLKRPLTDVQSLAIVLLACGTAI 144
                 6667899*************************************************986 PP

  == domain 3  score: 6.5 bits;  conditional E-value: 0.002
        EamA   3 gillallaalfwaiyfvlskillrkv.......spltltfvrfliagillliiallkegklaklslkdwllllllgllgtvlafllffyalkktsasna 94 
                 g+  a+l +l++a+++v s +l+++        + + ++ + + i++  l ++ +  ++ l+   l+++  ++   + +++l  l++   lk+t+  + 
  KOO22061.1 164 GLACAVLTCLLSALGGVHSERLMKDGehathsiHLQNMLLYLWGIGFNSLTLLGADGARVLSGELLRGYTPVVWALVANNALNGLAISAVLKYTDNIVR 262
                 667788999999999999988866664444222444555555555555555554444444466667777777777788999999999************ PP

        EamA  95 slitslePvftlilsvlllgekltlkqllgivlil 129
                 +++ + + ++tl l  +llg  +t   ll+++++ 
  KOO22061.1 263 VFAHAAAMLLTLGLENVLLGAEFTPQLLLSAMVVA 297
                 **************************999998875 PP

>> PUNUT  Purine nucleobase transmembrane transport
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.0      0.25   1.1e+03     126     158 ..       6      38 ..       4      71 .. 0.70
   2 !   19.0   5.1   1.5e-07   0.00068      65     178 ..      66     177 ..      29     181 .. 0.79

  Alignments for each domain:
  == domain 1  score: -1.5 bits;  conditional E-value: 0.25
       PUNUT 126 kftrfiinsvvlltisaallalssssdkpaees 158
                 +f  +++ + vl+t+   +++ s+ ++++++ +
  KOO22061.1   6 QFAKYVAAATVLMTLQPIITSASKVEGRYEYLQ 38 
                 577888888899999988888888777776655 PP

  == domain 2  score: 19.0 bits;  conditional E-value: 1.5e-07
       PUNUT  65 tssslslkklvllyivlGllvavdnllyslgllylpvstfslilatqLaFtaifsalinkqkftrfiinsvvlltisaallalssssdkpaeeskkkyv 163
                 t+++++  +l+ ++    +++ v+n l  + l+y++  tf ++++ + +Ft ++ +++ k  +t +  +++vll  ++a+  ls      +   +++ +
  KOO22061.1  66 THQRITCGHLMQFATPAAIYF-VNNNLVFVILAYVNSTTFQILSSLKTVFTGLLFRVMLKRPLTDVQSLAIVLLACGTAISQLSGGVCDATAR-TDSTA 162
                 555666666666666655555.555555566************************************************99876554444444.47889 PP

       PUNUT 164 igfiltlaasllfaL 178
                 +g+++++   ll aL
  KOO22061.1 163 VGLACAVLTCLLSAL 177
                 999999998888776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (300 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       597  (0.033298); expected 358.6 (0.02)
Passed bias filter:                      282  (0.0157287); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.44u 0.26s 00:00:00.70 Elapsed: 00:00:00.41
# Mc/sec: 2221.42
//
Query:       KOO22062.1  [L=292]
Description: hypothetical protein Ctob_000564 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (292 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       402  (0.0224218); expected 358.6 (0.02)
Passed bias filter:                      241  (0.0134419); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.43u 0.21s 00:00:00.64 Elapsed: 00:00:00.38
# Mc/sec: 2310.69
//
Query:       KOO22063.1  [L=382]
Description: mog1p -like protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.6e-19   69.9   0.0    3.7e-19   69.5   0.0    1.3  1  Mog1        Ran-interacting Mog1 protein
      2e-06   27.5   8.3      4e-05   23.4   1.4    4.4  4  TPR_2       Tetratricopeptide repeat
    0.00014   22.4  13.2       0.55   11.2   0.0    5.6  6  TPR_14      Tetratricopeptide repeat
     0.0002   21.9   4.3      0.041   14.5   0.2    3.8  3  TPR_16      Tetratricopeptide repeat
    0.00022   21.0   0.0      0.059   13.4   0.0    3.3  2  TPR_7       Tetratricopeptide repeat
    0.00054   20.4  14.0       0.17   12.4   0.1    5.2  6  TPR_19      Tetratricopeptide repeat
    0.00071   19.6   0.5      0.055   13.7   0.1    3.3  3  TPR_8       Tetratricopeptide repeat
     0.0022   17.7   1.4     0.0022   17.7   1.4    2.8  3  TPR_1       Tetratricopeptide repeat
     0.0049   16.9   0.6       0.46   10.6   0.1    2.6  2  Fis1_TPR_C  Fis1 C-terminal tetratricopeptide repeat
  ------ inclusion threshold ------
      0.017   15.4   2.1       0.27   11.6   0.1    3.2  3  TPR_12      Tetratricopeptide repeat
      0.026   15.1   3.4        1.7    9.5   0.4    4.1  4  TPR_6       Tetratricopeptide repeat
      0.032   14.4   1.3        2.8    8.2   0.2    3.2  3  ANAPC3      Anaphase-promoting complex, cyclosome, subunit 3
      0.045   14.1   1.4       0.35   11.2   0.1    3.0  4  TPR_20      Tetratricopeptide repeat
      0.097   12.6   1.6        1.1    9.2   0.1    3.3  2  TPR_10      Tetratricopeptide repeat
       0.22   10.7   2.5        7.8    5.6   0.1    2.9  3  TPR_15      Tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> Mog1  Ran-interacting Mog1 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.5   0.0   3.1e-22   3.7e-19       2      66 ..       6      72 ..       5     159 .. 0.84

  Alignments for each domain:
  == domain 1  score: 69.5 bits;  conditional E-value: 3.1e-22
                E-TTTSSEEE--TT-EEGGGTS---TTEEEEEETTTTE.EEEEE--B--TT--THH.HHHHHHHHHT CS
        Mog1  2 eLyGGaitvelPkgflDvSklRqvPDnQEVfvdkssde.siIvellerveeksdee.alklhledla 66
                +L+GGai ++lP+g++D+S+ R+vPDnQEV++++++ e s+++e+ler+e ++ ++ +++l ++ +a
  KOO22063.1  6 QLFGGAIVAQLPDGWMDASDARPVPDNQEVWLEPDGAErSVVIEILERAECADAQSaSARLAISPMA 72
                8********************************988666***********87777624555555555 PP

>> TPR_2  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.7   0.0      0.63   7.5e+02      18      34 .]     157     173 ..     153     173 .. 0.91
   2 ?    0.2   0.2      0.91   1.1e+03      18      34 .]     217     233 ..     217     233 .. 0.87
   3 ?    3.2   0.0       0.1   1.2e+02      15      33 ..     299     317 ..     298     318 .. 0.93
   4 !   23.4   1.4   3.3e-08     4e-05       4      29 ..     321     346 ..     319     347 .. 0.95

  Alignments for each domain:
  == domain 1  score: 0.7 bits;  conditional E-value: 0.63
       TPR_2  18 eeAleafekAleldPnn 34 
                 e+A+ +++ Al+ +P+n
  KOO22063.1 157 EKAVGLLRSALKKEPGN 173
                 799999********987 PP

  == domain 2  score: 0.2 bits;  conditional E-value: 0.91
       TPR_2  18 eeAleafekAleldPnn 34 
                 +eAl + +kA e  P++
  KOO22063.1 217 DEALPLAKKAYEARPGD 233
                 79999999**9999875 PP

  == domain 3  score: 3.2 bits;  conditional E-value: 0.1
       TPR_2  15 gdyeeAleafekAleldPn 33 
                 g+ + A++++ +A +++P+
  KOO22063.1 299 GNKQLAKKLLGEAASIAPT 317
                 89999************97 PP

  == domain 4  score: 23.4 bits;  conditional E-value: 3.3e-08
       TPR_2   4 lynlGlayyklgdyeeAleafekAle 29 
                 ly+ G  +++lg++++A+++fekAl+
  KOO22063.1 321 LYYVGVNAFQLGEFQKAAKYFEKALK 346
                 89***********************8 PP

>> TPR_14  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.1       8.9   1.1e+04      21      39 ..      48      66 ..      47      68 .. 0.74
   2 ?    0.1   0.1       1.7   2.1e+03      19      40 ..     126     147 ..     121     151 .. 0.81
   3 !   11.2   0.0   0.00046      0.55      18      43 ..     157     182 ..     144     183 .. 0.87
   4 ?    6.4   0.1     0.016        20      18      43 ..     217     242 ..     214     243 .. 0.94
   5 ?   -1.8   0.0         7   8.4e+03      19      36 ..     303     320 ..     299     324 .. 0.75
   6 !    9.1   0.1    0.0022       2.6      12      29 ..     329     346 ..     319     354 .. 0.86

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 8.9
      TPR_14 21 iallrralalaPddaeawl 39
                i++l+ra  ++ ++a a+l
  KOO22063.1 48 IEILERAECADAQSASARL 66
                6788898777777777776 PP

  == domain 2  score: 0.1 bits;  conditional E-value: 1.7
      TPR_14  19 eAiallrralalaPddaeawll 40 
                 e i+ + +a +++Pd + a  l
  KOO22063.1 126 EGIKEAAAAPKKDPDREKAVAL 147
                 67888999999***99887655 PP

  == domain 3  score: 11.2 bits;  conditional E-value: 0.00046
      TPR_14  18 deAiallrralalaPddaeawlllaq 43 
                 ++A+ llr al++ P++ e+ ++la+
  KOO22063.1 157 EKAVGLLRSALKKEPGNIETAMELAD 182
                 78**********************97 PP

  == domain 4  score: 6.4 bits;  conditional E-value: 0.016
      TPR_14  18 deAiallrralalaPddaeawlllaq 43 
                 deA+ l+++a ++ P+d  a+  +a+
  KOO22063.1 217 DEALPLAKKAYEARPGDVKALAVYAD 242
                 89*******************99996 PP

  == domain 5  score: -1.8 bits;  conditional E-value: 7
      TPR_14  19 eAiallrralalaPddae 36 
                  A +ll +a + aP+ + 
  KOO22063.1 303 LAKKLLGEAASIAPTRRN 320
                 588999999999998765 PP

  == domain 6  score: 9.1 bits;  conditional E-value: 0.0022
      TPR_14  12 lalGdpdeAiallrrala 29 
                 ++lG++++A++++++al+
  KOO22063.1 329 FQLGEFQKAAKYFEKALK 346
                 79**************98 PP

>> TPR_16  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.8   0.0     0.076        91      12      46 ..     155     186 ..     150     198 .. 0.84
   2 ?    2.7   0.2      0.18   2.1e+02      14      43 ..     217     243 ..     216     245 .. 0.83
   3 !   14.5   0.2   3.5e-05     0.041      12      63 ..     300     347 ..     298     352 .. 0.78

  Alignments for each domain:
  == domain 1  score: 3.8 bits;  conditional E-value: 0.076
      TPR_16  12 dyddAaaaleaalkrdpssPdaaeAllllgdaalr 46 
                 + ++A+ +l+ alk+    P + e +++l+da+ +
  KOO22063.1 155 KCEKAVGLLRSALKKE---PGNIETAMELADALNA 186
                 6799************...9999999999999865 PP

  == domain 2  score: 2.7 bits;  conditional E-value: 0.18
      TPR_16  14 ddAaaaleaalkrdpssPdaaeAllllgda 43 
                 d+A+++++ a +++   P ++ Al  ++d+
  KOO22063.1 217 DEALPLAKKAYEAR---PGDVKALAVYADS 243
                 68999999999999...9988888888776 PP

  == domain 3  score: 14.5 bits;  conditional E-value: 3.5e-05
      TPR_16  12 dyddAaaaleaalkrdpssPdaaeAllllgdaalrqgrlaeAaalyraalra 63 
                 + + A ++l +a   +   P +++ l++ g+ a+++g++++Aa ++++al+a
  KOO22063.1 300 NKQLAKKLLGEAASIA---P-TRRNLYYVGVNAFQLGEFQKAAKYFEKALKA 347
                 5667777776666666...5.7778999999999999999999999999965 PP

>> TPR_7  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.6   0.0     0.068        81      12      35 ..     153     174 ..     140     175 .. 0.80
   2 !   13.4   0.0   4.9e-05     0.059      10      26 ..     329     345 ..     324     355 .. 0.87

  Alignments for each domain:
  == domain 1  score: 3.6 bits;  conditional E-value: 0.068
       TPR_7  12 lGdyeeAielyeqsLaltkdpeda 35 
                 l + e+A++l++   al k+p+++
  KOO22063.1 153 LDKCEKAVGLLRS--ALKKEPGNI 174
                 5567999999999..999999876 PP

  == domain 2  score: 13.4 bits;  conditional E-value: 4.9e-05
       TPR_7  10 srlGdyeeAielyeqsL 26 
                 ++lG++++A++++e++L
  KOO22063.1 329 FQLGEFQKAAKYFEKAL 345
                 589************66 PP

>> TPR_19  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.0       1.8   2.1e+03      11      29 ..      48      66 ..      39      69 .. 0.82
   2 ?   -0.4   0.1       1.5   1.7e+03      46      67 ..     129     150 ..     123     151 .. 0.72
   3 !   12.4   0.1   0.00014      0.17       9      35 ..     158     184 ..     153     190 .. 0.93
   4 !    7.8   0.1    0.0039       4.6       8      33 ..     217     242 ..     216     245 .. 0.94
   5 ?    5.1   0.4     0.027        33      12      52 ..     306     345 ..     299     348 .. 0.54
   6 ?    4.6   0.3     0.039        47       2      20 ..     329     347 ..     328     378 .. 0.83

  Alignments for each domain:
  == domain 1  score: -0.7 bits;  conditional E-value: 1.8
      TPR_19 11 lalleqalqedpknaearl 29
                +++le+a  +d+++a arl
  KOO22063.1 48 IEILERAECADAQSASARL 66
                7899999888999998888 PP

  == domain 2  score: -0.4 bits;  conditional E-value: 1.5
      TPR_19  46 alLdalpeedpddaryasLlAk 67 
                 +  +a+p++dpd + + +L+ +
  KOO22063.1 129 KEAAAAPKKDPDREKAVALMKQ 150
                 5567899999998666667654 PP

  == domain 3  score: 12.4 bits;  conditional E-value: 0.00014
      TPR_19   9 eAlalleqalqedpknaearllLAeal 35 
                  A+ ll++al+++p+n e ++ LA+al
  KOO22063.1 158 KAVGLLRSALKKEPGNIETAMELADAL 184
                 799**********************98 PP

  == domain 4  score: 7.8 bits;  conditional E-value: 0.0039
      TPR_19   8 aeAlalleqalqedpknaearllLAe 33 
                 +eAl+l ++a+++ p++  a++ +A+
  KOO22063.1 217 DEALPLAKKAYEARPGDVKALAVYAD 242
                 79*******************99997 PP

  == domain 5  score: 5.1 bits;  conditional E-value: 0.027
      TPR_19  12 alleqalqedpknaearllLAeallalgqldeAealLdalp 52 
                 +ll +a + +p   ++ +      ++lg++++A +  ++++
  KOO22063.1 306 KLLGEAASIAPTRRNLYY-VGVNAFQLGEFQKAAKYFEKAL 345
                 555555555555555555.5555555555555555444443 PP

  == domain 6  score: 4.6 bits;  conditional E-value: 0.039
      TPR_19   2 laegdyaeAlalleqalqe 20 
                 ++ g ++ A++++e+al++
  KOO22063.1 329 FQLGEFQKAAKYFEKALKA 347
                 677999*********9975 PP

>> TPR_8  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.0       4.3   5.1e+03      19      32 ..     218     231 ..     217     233 .. 0.66
   2 ?    2.1   0.0      0.24   2.9e+02      15      33 ..     299     317 ..     296     318 .. 0.92
   3 !   13.7   0.1   4.6e-05     0.055      11      29 ..     328     346 ..     322     348 .. 0.90

  Alignments for each domain:
  == domain 1  score: -1.8 bits;  conditional E-value: 4.3
                 HHHHHHHHHHHHHH CS
       TPR_8  19 eAkeyyekaleldp 32 
                 eA    +ka e++p
  KOO22063.1 218 EALPLAKKAYEARP 231
                 66666777777776 PP

  == domain 2  score: 2.1 bits;  conditional E-value: 0.24
                 T-HHHHHHHHHHHHHHHHH CS
       TPR_8  15 gdyeeAkeyyekaleldpd 33 
                 g+++ Ak+ + +a +++p+
  KOO22063.1 299 GNKQLAKKLLGEAASIAPT 317
                 899*************996 PP

  == domain 3  score: 13.7 bits;  conditional E-value: 4.6e-05
                 HHHTT-HHHHHHHHHHHHH CS
       TPR_8  11 ylklgdyeeAkeyyekale 29 
                  ++lg++++A +y+ekal+
  KOO22063.1 328 AFQLGEFQKAAKYFEKALK 346
                 589***************8 PP

>> TPR_1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.0       4.8   5.7e+03      18      34 .]     157     173 ..     156     173 .. 0.75
   2 ?   -2.2   0.1       3.7   4.4e+03      18      32 ..     217     231 ..     217     233 .. 0.73
   3 !   17.7   1.4   1.9e-06    0.0022       5      29 ..     322     346 ..     321     347 .. 0.89

  Alignments for each domain:
  == domain 1  score: -2.6 bits;  conditional E-value: 4.8
                 HHHHHHHHHHHHHSTTH CS
       TPR_1  18 deAleyyekALelnPnn 34 
                 ++A+   + AL+ +P n
  KOO22063.1 157 EKAVGLLRSALKKEPGN 173
                 57777788899988876 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 3.7
                 HHHHHHHHHHHHHST CS
       TPR_1  18 deAleyyekALelnP 32 
                 deAl   +kA e +P
  KOO22063.1 217 DEALPLAKKAYEARP 231
                 688888888877666 PP

  == domain 3  score: 17.7 bits;  conditional E-value: 1.9e-06
                 HHHHHHHHHTT-HHHHHHHHHHHHH CS
       TPR_1   5 ynlGnayfklgkydeAleyyekALe 29 
                 y  G+  f+lg++++A +y+ekAL+
  KOO22063.1 322 YYVGVNAFQLGEFQKAAKYFEKALK 346
                 66677789****************7 PP

>> Fis1_TPR_C  Fis1 C-terminal tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.1   0.0     0.042        51      18      36 ..     157     175 ..     144     190 .. 0.76
   2 !   10.6   0.1   0.00039      0.46       2      29 ..     319     346 ..     318     348 .. 0.92

  Alignments for each domain:
  == domain 1  score: 4.1 bits;  conditional E-value: 0.042
                 HHHHHHHHHHHHHTTS-HH CS
  Fis1_TPR_C  18 seArryvdalLeiEPenrQ 36 
                 ++A  +++  L++EP+n  
  KOO22063.1 157 EKAVGLLRSALKKEPGNIE 175
                 5788889999******954 PP

  == domain 2  score: 10.6 bits;  conditional E-value: 0.00039
                 HHHHHHHHHHHHHT-HHHHHHHHHHHHH CS
  Fis1_TPR_C   2 eclYylAlGhyklgeYseArryvdalLe 29 
                   lYy+ +  + lge+++A +y +  L+
  KOO22063.1 319 RNLYYVGVNAFQLGEFQKAAKYFEKALK 346
                 569*********************9997 PP

>> TPR_12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.0       2.4   2.8e+03      56      72 ..     151     167 ..     143     169 .. 0.66
   2 ?    1.2   0.0      0.37   4.5e+02      20      33 ..     217     230 ..     214     241 .. 0.71
   3 ?   11.6   0.1   0.00022      0.27      48      73 ..     321     346 ..     302     347 .. 0.69

  Alignments for each domain:
  == domain 1  score: -1.3 bits;  conditional E-value: 2.4
      TPR_12  56 ralgryeeAlelleeal 72 
                 r l++ e+A+ ll+ al
  KOO22063.1 151 RGLDKCEKAVGLLRSAL 167
                 45667777777777776 PP

  == domain 2  score: 1.2 bits;  conditional E-value: 0.37
      TPR_12  20 deAlellekaleia 33 
                 deAl l +ka+e++
  KOO22063.1 217 DEALPLAKKAYEAR 230
                 46777777776654 PP

  == domain 3  score: 11.6 bits;  conditional E-value: 0.00022
      TPR_12  48 lrnLgrlyralgryeeAlelleeala 73 
                 l+  g   ++lg++++A +++e+al+
  KOO22063.1 321 LYYVGVNAFQLGEFQKAAKYFEKALK 346
                 44556666667777777777777765 PP

>> TPR_6  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.8   0.0      0.18   2.2e+02      13      32 ..     153     172 ..     139     173 .. 0.79
   2 ?   -2.6   0.0       9.7   1.2e+04      14      30 ..     299     315 ..     289     317 .. 0.76
   3 ?    9.5   0.4    0.0014       1.7       3      28 ..     321     346 ..     319     347 .. 0.93
   4 ?   -0.7   0.1       2.4   2.9e+03      14      24 ..     367     377 ..     359     378 .. 0.68

  Alignments for each domain:
  == domain 1  score: 2.8 bits;  conditional E-value: 0.18
                 HHHHHHHHHHHHHHHHH-TT CS
       TPR_6  13 lgdtdkAlealerlikeYPd 32 
                 l++ +kA+ +l++ +k+ P+
  KOO22063.1 153 LDKCEKAVGLLRSALKKEPG 172
                 47779***********9996 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 9.7
                 HHHHHHHHHHHHHHHH- CS
       TPR_6  14 gdtdkAlealerlikeY 30 
                 g+++ A+++l +  +  
  KOO22063.1 299 GNKQLAKKLLGEAASIA 315
                 67888999988776655 PP

  == domain 3  score: 9.5 bits;  conditional E-value: 0.0014
                 HHHHHHHHHHHHHHHHHHHHHHHHHH CS
       TPR_6   3 lyklalsyrklgdtdkAlealerlik 28 
                 ly+ +   ++lg+ +kA +++e+ +k
  KOO22063.1 321 LYYVGVNAFQLGEFQKAAKYFEKALK 346
                 89********99***********986 PP

  == domain 4  score: -0.7 bits;  conditional E-value: 2.4
                 HHHHHHHHHHH CS
       TPR_6  14 gdtdkAleale 24 
                 +  ++A++al+
  KOO22063.1 367 TGLARAKQALQ 377
                 46788999988 PP

>> ANAPC3  Anaphase-promoting complex, cyclosome, subunit 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.7   0.0      0.52   6.3e+02      39      65 ..     156     183 ..     144     193 .. 0.69
   2 ?    1.8   0.0      0.23   2.8e+02       6      32 ..     217     243 ..     213     246 .. 0.88
   3 ?    8.2   0.2    0.0023       2.8      14      76 ..     306     376 ..     302     380 .. 0.74

  Alignments for each domain:
  == domain 1  score: 0.7 bits;  conditional E-value: 0.52
                 HHHHHHHHHCT.SHHHC-HHHHHHHHHH CS
      ANAPC3  39 ykrAyellrka.klnskslgcrylfAqc 65 
                  ++A  llr+a k+++ +++ ++ +A +
  KOO22063.1 156 CEKAVGLLRSAlKKEPGNIETAMELADA 183
                 5566666666666666666655555544 PP

  == domain 2  score: 1.8 bits;  conditional E-value: 0.23
                 HHHHHHHHHHH.HHH--HHHHHHHHHH CS
      ANAPC3   6 knAiflaerllaaetespedayllAlc 32 
                 ++A+ la ++++a + + +++  +A +
  KOO22063.1 217 DEALPLAKKAYEARPGDVKALAVYADS 243
                 68999***********99999999976 PP

  == domain 3  score: 8.2 bits;  conditional E-value: 0.0023
                 HHH....HHH--HHHHHHHHHHHHHTT-HHHHHHHHHCT.SHHHC-H....HHHHHHHHHHHHTT-HHHHH CS
      ANAPC3  14 rll...aaetespedayllAlclylngqykrAyellrka.klnsksl....gcrylfAqcllkLkkyeeAi 76 
                 +ll   a+ +    ++y+ +   +++g++++A ++++ka k  + s        +l+A++   L + ++A+
  KOO22063.1 306 KLLgeaASIAPTRRNLYYVGVNAFQLGEFQKAAKYFEKAlKAPCGSAtemdFGGFLLAESKTGLARAKQAL 376
                 5554434677888999999********************99988887554444566666666666666665 PP

>> TPR_20  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.0       4.9   5.8e+03      57      82 ..      40      65 ..      38      69 .. 0.75
   2 ?   -1.7   0.0       3.1   3.7e+03      10      32 ..     127     149 ..     122     164 .. 0.64
   3 ?   11.2   0.1    0.0003      0.35      10      45 ..     162     197 ..     154     199 .. 0.86
   4 ?   -0.9   0.0       1.7   2.1e+03      12      32 ..     224     244 ..     217     259 .. 0.82

  Alignments for each domain:
  == domain 1  score: -2.3 bits;  conditional E-value: 4.9
      TPR_20 57 ddaarkqllkifealgsqdplvakyR 82
                d+a r  +++i+e ++ +d+  a +R
  KOO22063.1 40 DGAERSVVIEILERAECADAQSASAR 65
                67778888888888888887777776 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 3.1
      TPR_20  10 eleaalaanpddldarldlAlal 32 
                  +++a+aa ++d d + ++Al  
  KOO22063.1 127 GIKEAAAAPKKDPDREKAVALMK 149
                 56777777777777777777654 PP

  == domain 3  score: 11.2 bits;  conditional E-value: 0.0003
      TPR_20  10 eleaalaanpddldarldlAlallaagryeeAleqL 45 
                  l++al+++p +++++++lA+al+a  r +  +++L
  KOO22063.1 162 LLRSALKKEPGNIETAMELADALNAVMRIKTNANAL 197
                 5899*********************99888776666 PP

  == domain 4  score: -0.9 bits;  conditional E-value: 1.7
      TPR_20  12 eaalaanpddldarldlAlal 32 
                 ++a++a+p d++a   +A+  
  KOO22063.1 224 KKAYEARPGDVKALAVYADSF 244
                 68899******9988888765 PP

>> TPR_10  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.4   0.1      0.55   6.6e+02      18      32 ..     216     230 ..     215     230 .. 0.87
   2 ?    9.2   0.1   0.00094       1.1      11      30 ..     327     346 ..     321     347 .. 0.87

  Alignments for each domain:
  == domain 1  score: 0.4 bits;  conditional E-value: 0.55
      TPR_10  18 ydeAealleealair 32 
                 +deA+ l+++a+++r
  KOO22063.1 216 GDEALPLAKKAYEAR 230
                 599********9875 PP

  == domain 2  score: 9.2 bits;  conditional E-value: 0.00094
      TPR_10  11 alrqrgrydeAealleeala 30 
                   +q+g++++A +++e+al 
  KOO22063.1 327 NAFQLGEFQKAAKYFEKALK 346
                 5689**************96 PP

>> TPR_15  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.4   0.0      0.03        36     227     260 ..     153     186 ..     123     192 .. 0.77
   2 ?    5.6   0.1    0.0065       7.8     231     256 ..     217     242 ..     212     247 .. 0.93
   3 ?   -0.5   0.0      0.49   5.9e+02     151     179 ..     323     351 ..     301     376 .. 0.79

  Alignments for each domain:
  == domain 1  score: 3.4 bits;  conditional E-value: 0.03
      TPR_15 227 LgrpkkALeylrkqakenrkdplwllaYADaleq 260
                 L + +kA  +lr  +k+++ ++   +  ADal++
  KOO22063.1 153 LDKCEKAVGLLRSALKKEPGNIETAMELADALNA 186
                 7778889999999999999999999999999875 PP

  == domain 2  score: 5.6 bits;  conditional E-value: 0.0065
      TPR_15 231 kkALeylrkqakenrkdplwllaYAD 256
                 ++AL++ +k +++++ d+  l+ YAD
  KOO22063.1 217 DEALPLAKKAYEARPGDVKALAVYAD 242
                 69************************ PP

  == domain 3  score: -0.5 bits;  conditional E-value: 0.49
      TPR_15 151 araelyrqegqtdaAlrdyreAlalapds 179
                 +++  + q g+ ++A + +++Al+++ +s
  KOO22063.1 323 YVGVNAFQLGEFQKAAKYFEKALKAPCGS 351
                 55555667888899999999999887776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (382 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       462  (0.0257683); expected 358.6 (0.02)
Passed bias filter:                      414  (0.0230911); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                        15  (0.000836633); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              15  [number of targets reported over threshold]
# CPU time: 0.49u 0.25s 00:00:00.74 Elapsed: 00:00:00.41
# Mc/sec: 2786.44
//
Query:       KOO22064.1  [L=200]
Description: er membrane protein complex subunit 7-like protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      8e-18   64.7   0.0    2.5e-17   63.1   0.0    1.8  1  DUF2012          Protein of unknown function (DUF2012)
    8.1e-05   22.8   0.1    0.00012   22.3   0.1    1.3  1  CarboxypepD_reg  Carboxypeptidase regulatory-like domain
  ------ inclusion threshold ------
      0.015   14.8   0.1      0.025   14.1   0.1    1.3  1  SOP4             Suppressor of PMA 1-7 protein
       0.03   14.3   0.0       0.05   13.6   0.0    1.3  1  CarbopepD_reg_2  CarboxypepD_reg-like domain
       0.14   11.9   0.0       0.19   11.5   0.0    1.2  1  fn3_3            Polysaccharide lyase family 4, domain II


Domain annotation for each model (and alignments):
>> DUF2012  Protein of unknown function (DUF2012)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.1   0.0     7e-21   2.5e-17       8     123 .]      37     139 ..      31     139 .. 0.84

  Alignments for each domain:
  == domain 1  score: 63.1 bits;  conditional E-value: 7e-21
     DUF2012   8 antrvlLdsgqqrkfkalvrrDGsFifrdlpegsYlLevespeyvFepyrVdvkdkgkakasklrivetaevnvvdesgneesyplkika.varreyye 105
                  n+rv+L++g +   +a +r+DGsF ++ + +gsYlLev   + v++++r dv+    a + k+r + t   ++        + pl +++ +a+ +++e
  KOO22064.1  37 DNVRVVLNGGMY---TAIPRQDGSFKLHAVAPGSYLLEVLDTQSVWPTVRLDVS----ATSGKARALLTHSRQP-------LPFPLPLEPiLAKLTFFE 121
                 699*********...***************************************....4444444444444445.......56777776527999**** PP

     DUF2012 106 erekfsilsLlknPmvLl 123
                 +re f++  +l+nPmvL+
  KOO22064.1 122 KREGFNWAGMLMNPMVLM 139
                 *****************9 PP

>> CarboxypepD_reg  Carboxypeptidase regulatory-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.3   0.1   3.4e-08   0.00012       2      71 ..      26      86 ..      25      98 .. 0.78

  Alignments for each domain:
  == domain 1  score: 22.3 bits;  conditional E-value: 3.4e-08
  CarboxypepD_reg  2 isGrVtdasgapiagatVtvtnadtgtvastttdadGafrlrglppgtysvtvsapGyatatreevtlta 71
                     ++Gr t  +  p+ +++V++     g  +++   +dG+f+l +++pg+y ++v     ++++  +v+l++
       KOO22064.1 26 VEGRLT--TELPLDNVRVVLN----GGMYTAIPRQDGSFKLHAVAPGSYLLEV--LDTQSVWP-TVRLDV 86
                     566666..678**********....***************************9..44445553.344444 PP

>> SOP4  Suppressor of PMA 1-7 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   0.1   6.9e-06     0.025     175     200 ..     142     167 ..     124     172 .. 0.85

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 6.9e-06
        SOP4 175 itvillllFPllveklDpetakalke 200
                 +t++++++FP ++e++Dpe  k +++
  KOO22064.1 142 FTLLIMVVFPKMMENMDPEQLKEMQK 167
                 7999****************999975 PP

>> CarbopepD_reg_2  CarboxypepD_reg-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.0   1.4e-05      0.05       6      50 ..      31      72 ..      26      76 .. 0.89

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 1.4e-05
  CarbopepD_reg_2  6 vdketkeplpgatVyvkgtkkgtvTdenGnFelknlpagkytLvv 50
                     +   t+ pl  + V+++g    ++  ++G+F+l+++ +g y L v
       KOO22064.1 31 T---TELPLDNVRVVLNGGMYTAIPRQDGSFKLHAVAPGSYLLEV 72
                     4...4569*********************************9876 PP

>> fn3_3  Polysaccharide lyase family 4, domain II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   5.3e-05      0.19      27      71 ..      48      92 ..      29      96 .. 0.79

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 5.3e-05
       fn3_3 27 YwteadssgsftipnVkpGtYrltvYadglfgdykqdsvtVtagk 71
                Y++   ++gsf+ ++V pG+Y l v  ++ +  +++ +v+ t+gk
  KOO22064.1 48 YTAIPRQDGSFKLHAVAPGSYLLEVLDTQSVWPTVRLDVSATSGK 92
                77777788***************9988777777766666666666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (200 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       843  (0.0470188); expected 358.6 (0.02)
Passed bias filter:                      595  (0.0331865); expected 358.6 (0.02)
Passed Vit filter:                        49  (0.002733); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.44u 0.24s 00:00:00.68 Elapsed: 00:00:00.40
# Mc/sec: 1504.12
//
Query:       KOO22065.1  [L=142]
Description: hypothetical protein Ctob_000573 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (142 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       275  (0.0153383); expected 358.6 (0.02)
Passed bias filter:                      208  (0.0116013); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.21s 00:00:00.59 Elapsed: 00:00:00.38
# Mc/sec: 1124.95
//
Query:       KOO22066.1  [L=269]
Description: calcium-binding protein 2 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
      1e-23   81.0   9.3    2.8e-05   23.4   0.5    4.3  4  EF-hand_1     EF hand
    1.2e-21   74.7   7.0    0.00014   21.5   0.0    4.5  4  EF-hand_6     EF-hand domain
    1.7e-19   68.4   8.9    0.00073   18.9   0.1    4.4  4  EF-hand_5     EF hand
    1.7e-19   70.0   6.8    1.1e-10   41.8   0.2    2.7  3  EF-hand_7     EF-hand domain pair
    1.3e-17   63.3   3.4    1.1e-09   38.0   0.1    3.4  3  EF-hand_8     EF-hand domain pair
     0.0019   18.5   0.2        5.1    7.5   0.0    3.6  4  SPARC_Ca_bdg  Secreted protein acidic and rich in cysteine Ca
  ------ inclusion threshold ------
      0.095   12.6   0.1         21    5.0   0.0    3.1  3  Caleosin      Caleosin related protein
       0.12   12.7   0.0       0.64   10.4   0.0    2.2  2  EF-hand_9     EF-hand domain


Domain annotation for each model (and alignments):
>> EF-hand_1  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.9   0.0   1.8e-08     4e-05       5      28 ..      32      55 ..      29      56 .. 0.92
   2 !   23.4   0.5   1.2e-08   2.8e-05       2      25 ..      70      93 ..      69      96 .. 0.90
   3 !   17.9   0.2   6.9e-07    0.0015       2      27 ..     106     131 ..     105     133 .. 0.89
   4 !   20.3   0.1   1.2e-07   0.00027       1      24 [.     149     172 ..     149     176 .. 0.90

  Alignments for each domain:
  == domain 1  score: 22.9 bits;  conditional E-value: 1.8e-08
                HHHHHTTTSSSEEEHHHHHHHHHH CS
   EF-hand_1  5 iFrefDkDgdGkIdfeEfkellkk 28
                +F+++DkD++G+++++Ef e +++
  KOO22066.1 32 FFEVIDKDHNGQVSRSEFHEGMEA 55
                7********************987 PP

  == domain 2  score: 23.4 bits;  conditional E-value: 1.2e-08
                HHHHHHHHTTTSSSEEEHHHHHHH CS
   EF-hand_1  2 lkeiFrefDkDgdGkIdfeEfkel 25
                 +e+F+efD Dg+G I+++E+ ++
  KOO22066.1 70 YDELFDEFDMDGSGEISYKEYFQY 93
                589*****************9876 PP

  == domain 3  score: 17.9 bits;  conditional E-value: 6.9e-07
                 HHHHHHHHTTTSSSEEEHHHHHHHHH CS
   EF-hand_1   2 lkeiFrefDkDgdGkIdfeEfkellk 27 
                 ++++F   D+ gdG+Id+ Ef+++++
  KOO22066.1 106 FRDFFIRSDVSGDGQIDKAEFRAAVM 131
                 67889999***************987 PP

  == domain 4  score: 20.3 bits;  conditional E-value: 1.2e-07
                 HHHHHHHHHTTTSSSEEEHHHHHH CS
   EF-hand_1   1 elkeiFrefDkDgdGkIdfeEfke 24 
                 +++e+F+++D++g+G ++++E+ +
  KOO22066.1 149 DVDEVFDDMDVNGSGSLTLNELHR 172
                 589******************976 PP

>> EF-hand_6  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.7   0.0   2.4e-07   0.00053       4      31 .]      31      57 ..      29      57 .. 0.92
   2 !   16.0   0.3   3.8e-06    0.0084       3      23 ..      71      91 ..      70     100 .. 0.83
   3 !   18.3   0.2   6.8e-07    0.0015       2      26 ..     106     130 ..     105     135 .. 0.91
   4 !   21.5   0.0   6.3e-08   0.00014       2      27 ..     150     175 ..     149     181 .. 0.91

  Alignments for each domain:
  == domain 1  score: 19.7 bits;  conditional E-value: 2.4e-07
   EF-hand_6  4 eaFklfDkdgdGkidaeElrkalrkalg 31
                ++F+ +Dkd++G+++++E+   +  alg
  KOO22066.1 31 SFFEVIDKDHNGQVSRSEFHEGME-ALG 57
                69******************9998.776 PP

  == domain 2  score: 16.0 bits;  conditional E-value: 3.8e-06
   EF-hand_6  3 reaFklfDkdgdGkidaeElr 23
                +e+F++fD dg+G+i+++E  
  KOO22066.1 71 DELFDEFDMDGSGEISYKEYF 91
                589***************974 PP

  == domain 3  score: 18.3 bits;  conditional E-value: 6.8e-07
   EF-hand_6   2 lreaFklfDkdgdGkidaeElrkal 26 
                 +r++F   D++gdG+id++E+r+a 
  KOO22066.1 106 FRDFFIRSDVSGDGQIDKAEFRAAV 130
                 899*******************986 PP

  == domain 4  score: 21.5 bits;  conditional E-value: 6.3e-08
   EF-hand_6   2 lreaFklfDkdgdGkidaeElrkalr 27 
                 ++e+F+ +D++g+G+++ +El + lr
  KOO22066.1 150 VDEVFDDMDVNGSGSLTLNELHRQLR 175
                 579********************999 PP

>> EF-hand_5  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.7   0.1   3.7e-07   0.00084       4      23 ..      32      51 ..      31      53 .. 0.90
   2 !   18.9   0.1   3.3e-07   0.00073       3      20 ..      71      89 ..      69      93 .. 0.89
   3 !   16.4   0.3   2.1e-06    0.0047       2      24 ..     107     130 ..     106     131 .. 0.86
   4 !   17.2   0.0   1.1e-06    0.0025       2      23 ..     151     172 ..     150     174 .. 0.87

  Alignments for each domain:
  == domain 1  score: 18.7 bits;  conditional E-value: 3.7e-07
                HHHHH-SS-SSCE-HHHHHH CS
   EF-hand_5  4 tFqaiDlNgDGkIskeELkt 23
                +F+ iD+++ G++s++E+ +
  KOO22066.1 32 FFEVIDKDHNGQVSRSEFHE 51
                6*****************65 PP

  == domain 2  score: 18.9 bits;  conditional E-value: 3.3e-07
                H.HHHHH-SS-SSCE-HHH CS
   EF-hand_5  3 d.tFqaiDlNgDGkIskeE 20
                d +F+++D++g+G Is  E
  KOO22066.1 71 DeLFDEFDMDGSGEISYKE 89
                449*************999 PP

  == domain 3  score: 16.4 bits;  conditional E-value: 2.1e-06
                 HHHHHHH-SS-SSCE-HHHHHH.H CS
   EF-hand_5   2 kdtFqaiDlNgDGkIskeELkt.l 24 
                 +d+F + D+ gDG+I+k E+++ +
  KOO22066.1 107 RDFFIRSDVSGDGQIDKAEFRAaV 130
                 7889999*************9855 PP

  == domain 4  score: 17.2 bits;  conditional E-value: 1.1e-06
                 HHHHHHH-SS-SSCE-HHHHHH CS
   EF-hand_5   2 kdtFqaiDlNgDGkIskeELkt 23 
                 +++F+ +D+Ng+G ++  EL +
  KOO22066.1 151 DEVFDDMDVNGSGSLTLNELHR 172
                 469****************954 PP

>> EF-hand_7  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.8   0.2   4.8e-14   1.1e-10       7      70 ..      32      94 ..      28      95 .. 0.93
   2 !   31.6   0.3   7.2e-11   1.6e-07       5      67 ..     107     171 ..     103     175 .. 0.75
   3 ?   -3.9   0.1         8   1.8e+04      12      23 ..     248     259 ..     246     266 .. 0.60

  Alignments for each domain:
  == domain 1  score: 41.8 bits;  conditional E-value: 4.8e-14
   EF-hand_7  7 aFkelDtdgdgyldkeellrllrkifqgagegsklsdeelellfkefDtdkdGvisfdEFlkly 70
                 F+ +D+d++g ++++e+++ ++++  + ++g++++++  ++lf+efD d++G+is+ E+ +++
  KOO22066.1 32 FFEVIDKDHNGQVSRSEFHEGMEALGLQ-DPGFNMPPHIYDELFDEFDMDGSGEISYKEYFQYV 94
                4888****************99999999.*******************************9986 PP

  == domain 2  score: 31.6 bits;  conditional E-value: 7.2e-11
   EF-hand_7   5 keaFkelDtdgdgyldkeellr...llrkifqga.....gegsklsdeelellfkefDtdkdGvisfdEFl 67 
                 ++ F   D+ gdg +dk+e++    l     +g      + + ++    ++++f+++D +++G+++++E++
  KOO22066.1 107 RDFFIRSDVSGDGQIDKAEFRAavmL----LHGQhghemEIAAHV--ADVDEVFDDMDVNGSGSLTLNELH 171
                 4568889**************74442....333334433444444..44********************87 PP

  == domain 3  score: -3.9 bits;  conditional E-value: 8
   EF-hand_7  12 Dtdgdgyldkee 23 
                 Dt+ d +ld  +
  KOO22066.1 248 DTRLDKHLDSGD 259
                 666666666665 PP

>> EF-hand_8  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.4   0.1   2.3e-05     0.051      28      53 ..      29      54 ..      17      56 .. 0.89
   2 !   38.0   0.1   4.7e-13   1.1e-09       1      54 [.      40      96 ..      40      97 .. 0.95
   3 !   23.1   0.1   2.2e-08     5e-05       2      51 ..     118     173 ..     117     175 .. 0.86

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 2.3e-05
   EF-hand_8 28 vdilfrefDtdgdGkisfeEFcvlle 53
                v++ f  +D d++G +s  EF++ +e
  KOO22066.1 29 VCSFFEVIDKDHNGQVSRSEFHEGME 54
                6677999***************9998 PP

  == domain 2  score: 38.0 bits;  conditional E-value: 4.7e-13
   EF-hand_8  1 ekgkItreelrrilrilglkk...glseeevdilfrefDtdgdGkisfeEFcvller 54
                ++g+++r e+++ + +lgl++    + ++  d+lf+efD+dg+G is++E+++++ r
  KOO22066.1 40 HNGQVSRSEFHEGMEALGLQDpgfNMPPHIYDELFDEFDMDGSGEISYKEYFQYVLR 96
                68************888************************************9875 PP

  == domain 3  score: 23.1 bits;  conditional E-value: 2.2e-08
   EF-hand_8   2 kgkItreelrrilrilglkk......glseeevdilfrefDtdgdGkisfeEFcvl 51 
                 +g+I+++e+r ++ +l+ ++           +vd++f+ +D +g+G ++++E +  
  KOO22066.1 118 DGQIDKAEFRAAVMLLHGQHghemeiAAHVADVDEVFDDMDVNGSGSLTLNELHRQ 173
                 8**********998886566799977677778********************9976 PP

>> SPARC_Ca_bdg  Secreted protein acidic and rich in cysteine Ca binding region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.9   0.0     0.014        32      90     111 ..      29      50 ..       5      55 .. 0.78
   2 ?    0.8   0.0      0.27   6.1e+02      91     111 ..      71      91 ..      64      93 .. 0.88
   3 !    7.5   0.0    0.0023       5.1      60     111 ..      74     127 ..      73     129 .. 0.84
   4 ?    1.2   0.0       0.2   4.5e+02      48      77 ..     142     171 ..     133     180 .. 0.76

  Alignments for each domain:
  == domain 1  score: 4.9 bits;  conditional E-value: 0.014
  SPARC_Ca_bdg  90 ikpflescDadkdkkislkEwc 111
                   +  f+e  D d+++++s++E+ 
    KOO22066.1  29 VCSFFEVIDKDHNGQVSRSEFH 50 
                   5679999999999999999996 PP

  == domain 2  score: 0.8 bits;  conditional E-value: 0.27
  SPARC_Ca_bdg  91 kpflescDadkdkkislkEwc 111
                   ++++++ D+d  ++is kE+ 
    KOO22066.1  71 DELFDEFDMDGSGEISYKEYF 91 
                   67999**************96 PP

  == domain 3  score: 7.5 bits;  conditional E-value: 0.0023
  SPARC_Ca_bdg  60 FsklDtnsdkvlsksELap..lraplvklehCikpflescDadkdkkislkEwc 111
                   F+++D++  + +s +E  +  lr ++ +  +  + f+ + D+  d++i+++E+ 
    KOO22066.1  74 FDEFDMDGSGEISYKEYFQyvLRDSIRRKANLFRDFFIRSDVSGDGQIDKAEFR 127
                   788888888888888876434888999999999*******************95 PP

  == domain 4  score: 1.2 bits;  conditional E-value: 0.2
  SPARC_Ca_bdg  48 nlkeckepvawkFsklDtnsdkvlsksELa 77 
                   + ++++  v   F+++D+n  ++l+ +EL+
    KOO22066.1 142 EIAAHVADVDEVFDDMDVNGSGSLTLNELH 171
                   555566667778999999999999999996 PP

>> Caleosin  Caleosin related protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.0   0.0    0.0093        21      12      35 ..      32      58 ..      25      65 .. 0.86
   2 ?    3.2   0.1     0.034        75      92     119 ..      67      94 ..      60     138 .. 0.88
   3 ?    1.2   0.0      0.13     3e+02      94     120 ..     149     175 ..      77     185 .. 0.76

  Alignments for each domain:
  == domain 1  score: 5.0 bits;  conditional E-value: 0.0093
    Caleosin 12 Ff...DrdkdGiiypldtyrgfralgf 35
                Ff   D+d++G +  ++ ++g+ alg+
  KOO22066.1 32 FFeviDKDHNGQVSRSEFHEGMEALGL 58
                555559*******************97 PP

  == domain 2  score: 3.2 bits;  conditional E-value: 0.034
    Caleosin  92 pqkfeeifskyakekkdaltlkevlell 119
                 p+ ++e+f++++ + ++++++ke ++++
  KOO22066.1  67 PHIYDELFDEFDMDGSGEISYKEYFQYV 94 
                 5678999**************9999876 PP

  == domain 3  score: 1.2 bits;  conditional E-value: 0.13
    Caleosin  94 kfeeifskyakekkdaltlkevlellk 120
                   +e+f+  + + +++ltl+e+ + l+
  KOO22066.1 149 DVDEVFDDMDVNGSGSLTLNELHRQLR 175
                 567888888888888888888877665 PP

>> EF-hand_9  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.0   0.00029      0.64       3      66 .]      32      99 ..      30      99 .. 0.87
   2 ?   -1.3   0.0       1.3   2.8e+03       2      25 ..     152     175 ..     151     179 .. 0.81

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00029
   EF-hand_9  3 vFevcDtqktGrVpvsrlidyLravtaqdpees....eLeelakelDPdgedasvdldtflrvmrewi 66
                 Fev D +  G+V  s+  + ++a + qdp         +el  e+D dg ++  +++ f+ v+r+ i
  KOO22066.1 32 FFEVIDKDHNGQVSRSEFHEGMEALGLQDPGFNmpphIYDELFDEFDMDGSGEISYKEYFQYVLRDSI 99
                7***************************88543344388************88889999999999876 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 1.3
   EF-hand_9   2 tvFevcDtqktGrVpvsrlidyLr 25 
                  vF+  D++  G  ++ +l   Lr
  KOO22066.1 152 EVFDDMDVNGSGSLTLNELHRQLR 175
                 678899999999999999887777 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (269 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       380  (0.0211947); expected 358.6 (0.02)
Passed bias filter:                      330  (0.0184059); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.48u 0.25s 00:00:00.73 Elapsed: 00:00:00.43
# Mc/sec: 1875.53
//
Query:       KOO22067.1  [L=451]
Description: adenosine deaminase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    3.1e-29  102.4   0.1    1.3e-18   67.4   0.0    3.4  2  A_deaminase  Adenosine/AMP deaminase


Domain annotation for each model (and alignments):
>> A_deaminase  Adenosine/AMP deaminase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.5   0.1   2.5e-11   4.4e-07       2     128 ..       7     159 ..       6     196 .. 0.77
   2 !   67.4   0.0   7.2e-23   1.3e-18     170     327 ..     240     437 ..     236     438 .. 0.86

  Alignments for each domain:
  == domain 1  score: 29.5 bits;  conditional E-value: 2.5e-11
                  S-EEEEEEECCCSS-HHHHHHHHHHHCHT..SS-SCCCC...........CCCCHCHCCHHHHCCHCCCHHCCCHHHTCCCCCCHHHHHHCCCCCHCT CS
  A_deaminase   2 lpKvdlHvHldgclnpktllrlakkkgikeldekvveed...........eklltlqekfesLkeflydlsvdvlvlhwlievvrllavekakdlakd 88 
                  +pKv+lHvHldg+     l r ak  + + +  +++ ++            kl+    + +sLk++++ +   +  +++   ++  la ++++ +a++
   KOO22067.1   7 MPKVELHVHLDGAFDAGVLHRAAKACLADGKLSEDIAAKvsecgddveafTKLVSCHPEDQSLKSMIDRFVFFLTFVQGNLPIIEELACAFVSRQAAQ 104
                  7********************999988776666655544111111111003444445667899999999999999999******************** PP

                  TCCCCCCCCSHHHHH.................HH-GCSTCCHHHHCCCCCCCCCCHC CS
  A_deaminase  89 fvkylevifsPlfea.................tagpqlpelevvlkvvdgfdsvede 128
                   v y ev++sP+ ++                  ++   + ++vv++v +g++ ++++
   KOO22067.1 105 NVLYTEVRYSPHIMTsvgtydgdaganasgsdDMH--AQAQAVVEAVTRGLRRGCEK 159
                  ***************99999999999887644333..56788889999998888764 PP

  == domain 2  score: 67.4 bits;  conditional E-value: 7.2e-23
                  -TTSTTGGGHHHHHCCCCHTT-EEEEEESSSS-CHHHHHHHHCS..--SCECE-GGGGGSHHHHHHHHHC.....................T-EEEE- CS
  A_deaminase 170 dekiepaslflklraeagkstllltpHaGEagglehvveAllll..kaerigHGvrlrkdpvLqyllala.....................qiplevc 244
                  + + e + ++ ++ ++ ++ +l +t HaGE+g ++ v++A+ +   +a+rigHG+ ++ ++  ++  + a                       ++e c
   KOO22067.1 240 ASQSENSAKHRQALRKCREMGLGITNHAGETGIAANVSAAVSDAygRATRIGHGYAAVAAALEMASASAAdgapprpaevaaafdslglkaPLTFECC 337
                  566778889*******************************9885447********9987765555555447******************99999**** PP

                  HHHHCCCSST..-TTTT-CHHHHHHTT-...............EEEE--BSCCCCT-SHHHHHHHHHHHHT--HHHHHHHHHHHHHCSSS-HHHHHHH CS
  A_deaminase 245 PlSNvalgaf..leyaenPlkeflergl...............nvslntDDPlqfgttLieeYaiaaqvfklseedlaelarNsvkqsflsadekkkl 325
                  P+S+ +++ +  ++ +e+Pl ++ + ++               +v++n+DDP++fg++L +e + +a  ++l++  l+ la ++v+++fl+a  k++l
   KOO22067.1 338 PTSSRSTRGWtgATWSEHPLAQLYRLRMvaeasgdaasaaalpRVTVNSDDPAVFGSSLTDECELVATGMGLGAPALRLLAADAVEACFLDAPGKQRL 435
                  ********99445889*****998765545555555555555679***************************************************99 PP

                  CH CS
  A_deaminase 326 ld 327
                   +
   KOO22067.1 436 RE 437
                  76 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (451 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       370  (0.020637); expected 358.6 (0.02)
Passed bias filter:                      265  (0.0147805); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.51u 0.25s 00:00:00.76 Elapsed: 00:00:00.44
# Mc/sec: 3082.52
//
Query:       KOO22068.1  [L=332]
Description: leucine rich repeat family protein, partial [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
     0.0018   18.5   0.1     0.0044   17.3   0.1    1.7  1  Ndufs5    NADH:ubiquinone oxidoreductase, NDUFS5-15kDa


Domain annotation for each model (and alignments):
>> Ndufs5  NADH:ubiquinone oxidoreductase, NDUFS5-15kDa
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   0.1   2.4e-07    0.0044      48      75 ..     301     326 ..     256     329 .. 0.74

  Alignments for each domain:
  == domain 1  score: 17.3 bits;  conditional E-value: 2.4e-07
                 HHHTTTSTTHHHHHHHHHHHT-HHHHHH CS
      Ndufs5  48 gktrakkeckiefedfeecllrqktmkr 75 
                  +   +  c++  edf+ecl r  tmkr
  KOO22068.1 301 AQ--RRAMCNLRIEDFYECLVRLATMKR 326
                 33..3457*******************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (332 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       509  (0.0283898); expected 358.6 (0.02)
Passed bias filter:                      468  (0.026103); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.25s 00:00:00.72 Elapsed: 00:00:00.40
# Mc/sec: 2503.15
//
Query:       KOO22069.1  [L=940]
Description: adenylyl cyclase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
      1e-08   35.0   0.0    1.7e-08   34.3   0.0    1.3  1  Guanylate_cyc  Adenylate and Guanylate cyclase catalytic doma
      0.001   18.4   6.5     0.0011   18.2   3.7    2.1  2  Ion_trans      Ion transport protein


Domain annotation for each model (and alignments):
>> Guanylate_cyc  Adenylate and Guanylate cyclase catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.3   0.0   1.9e-12   1.7e-08      13     173 ..     640     832 ..     637     841 .. 0.77

  Alignments for each domain:
  == domain 1  score: 34.3 bits;  conditional E-value: 1.9e-12
  Guanylate_cyc  13 FadIvgftalssahspievvklLnelyarfdelldekkvykvktiGdaymvvsglp...................eekaahaaklaelaLdmleal 89 
                    F+ I +++++ +   ++e++ + n   + + + +++++++  + +G+a+++v ++p                   +        +++ aL  +  +
     KOO22069.1 640 FCIIDEYEEVLECL-GEEILPFTNRAASIVHDAVTANGGQPNRNLGEAFLCVWKAPtdgldpellttelldrmetR--------MCDGALTAFRRC 726
                    77788888888855.9********************************************9999998555555550........444444444444 PP

  Guanylate_cyc  90 .eevavesk.................eglkvrvGihtGpvvagviG.akkprydvwGntvnlAsrmestgkagkiqv..seetyellk.eeqfelt 163
                     + va++ +                  + +++ G+h+G  + g +G + k++  + + +vnlA+r+es +k++ +++  se+ y  l+      l+
     KOO22069.1 727 vRCVAQSARlqayneheeilkafggeYSTRIGYGLHYGWAIEGAVGtNIKIDCSYLSPNVNLAARLESATKMYGVNIlmSEAFYTKLSpPVRQGLR 822
                    2333322224445555555666665578888889************88999*********************998887799999999975566677 PP

  Guanylate_cyc 164 ergevevkGk 173
                    +++ v +kG 
     KOO22069.1 823 RVDVVCLKGS 832
                    7777777774 PP

>> Ion_trans  Ion transport protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.2   3.7   1.3e-07    0.0011      35     111 ..     144     235 ..     120     242 .. 0.76
   2 ?   -0.1   0.0     0.049   4.4e+02     125     149 ..     524     547 ..     518     647 .. 0.80

  Alignments for each domain:
  == domain 1  score: 18.2 bits;  conditional E-value: 1.3e-07
                 HHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHCHSHHHHHHHHHHHHHHHHH.........HHHH.........HHHHHHHHHHHHGGGGGGHHHC CS
   Ion_trans  35 leilelvftaiftlemllkilalgllikkrYlrdpwnilDflvvlpsllsl.........vlse.........esllllsvlrlfrvlrllklis 111
                 +++  + + ++ +l +ll+i+ + + +++ Y++++ + lD++++l+ ++++         +            ++ ++ +v rl+rv+r+++li+
  KOO22069.1 144 ADYYIWSVHVVVMLSFLLEIVLRSY-SQRGYFWSFYCNLDIVATLTMIFDWlpllyttssD--AgstavraakSARVGTAVARLVRVVRIIRLIK 235
                 5555666677888888888888888.8899*******************998888766551..15556667777788888888888888888876 PP

  == domain 2  score: -0.1 bits;  conditional E-value: 0.049
                 HHHHHHHHHHHHHHHHHHHHHHHHH CS
   Ion_trans 125 rsvkdllnvlllllvvlfifaligv 149
                 + v++++n++l+l+v  ++ a +g+
  KOO22069.1 524 QDVQAFFNIMLILCVACLL-AYMGF 547
                 5577888888776554444.44443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (940 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       462  (0.0257683); expected 358.6 (0.02)
Passed bias filter:                      392  (0.021864); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.67u 0.26s 00:00:00.93 Elapsed: 00:00:00.43
# Mc/sec: 6494.99
//
Query:       KOO22070.1  [L=123]
Description: hypothetical protein Ctob_000570 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    0.00032   20.6   0.0    0.00051   19.9   0.0    1.3  1  Galactosyl_T  Galactosyltransferase


Domain annotation for each model (and alignments):
>> Galactosyl_T  Galactosyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.9   0.0   2.8e-08   0.00051      76     116 ..      60      98 ..      53     106 .. 0.90

  Alignments for each domain:
  == domain 1  score: 19.9 bits;  conditional E-value: 2.8e-08
  Galactosyl_T  76 skvpeaklilkvDdDvyvnpdkLlsllkrelidpsessvyg 116
                   + +p+a ++l vDdDv+++ ++L ++l+++  d++e  +yg
    KOO22070.1  60 TRFPHAAYYLIVDDDVFISRARLYEYLAHR--DQTELALYG 98 
                   5689*************************9..888888887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (123 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       398  (0.0221987); expected 358.6 (0.02)
Passed bias filter:                      362  (0.0201908); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.25s 00:00:00.62 Elapsed: 00:00:00.39
# Mc/sec: 936.63
//
Query:       KOO22071.1  [L=129]
Description: hypothetical protein Ctob_000571 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (129 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       361  (0.020135); expected 358.6 (0.02)
Passed bias filter:                      302  (0.0168442); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.23s 00:00:00.61 Elapsed: 00:00:00.40
# Mc/sec: 979.37
//
Query:       KOO22072.1  [L=414]
Description: nucleoside family [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    4.5e-64  216.1   0.0      1e-63  214.9   0.0    1.6  2  Nucleos_tra2_C  Na+ dependent nucleoside transporter C-termin


Domain annotation for each model (and alignments):
>> Nucleos_tra2_C  Na+ dependent nucleoside transporter C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.0      0.42   7.6e+03      90     113 ..      13      36 ..      11      44 .. 0.65
   2 !  214.9   0.0   5.7e-68     1e-63       1     205 [.      93     386 ..      93     388 .. 0.83

  Alignments for each domain:
  == domain 1  score: -3.5 bits;  conditional E-value: 0.42
                     HHHHHHHHHHHHHHHTT--GGGHH CS
  Nucleos_tra2_C  90 lelilgyvfaplafllGvpwedal 113
                     l+ ++g +   l  llGv++++a+
      KOO22072.1  13 LQVVFGRLGGALSALLGVSRAEAI 36 
                     677777777778888888665543 PP

  == domain 2  score: 214.9 bits;  conditional E-value: 5.7e-68
                     HHHHHHHHHHHHHHHHHHHHS---..................................................S.................... CS
  Nucleos_tra2_C   1 yllaAsvmsapaalaiskllvPet..................................................e.................... 25 
                     +llaAsv sapa+lai+k+l P++                                                  +                    
      KOO22072.1  93 HLLAASVTSAPASLAIAKMLHPDKprgarrspradgwslhgsakatelaevkvgsaplgeetdagssvsssahaSssreissrefssreidvgai 187
                     9***********************87777777777777777777776666666666666665555555555555055555555555555555555 PP

                     ............-...................---SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH..T-TT--HHHHHHHH CS
  Nucleos_tra2_C  26 ............esktkk.........keekeeekanvleaaaegaldglklalniaamliafvalvalinallgwlgs..gleelslelilgyv 97 
                                 +    +          e  + e+ nv++aaaega++++ l++ iaa+liaf+alva+++ l g l s  g+e++s++  lg++
      KOO22072.1 188 rtvtglarrgdlN----GkkvrvfddvVELPAAETDNVVQAAAEGAINAVPLVACIAATLIAFLALVAMLDTLAGFLFSlvGIEGVSFTRALGWL 278
                     5555444444440....0445556677555566778*****************************************99999************* PP

                     HHHHHHHTT--GGGHHHHHHHHHHHHHT-HHHHHHHHGGGGSSS---HHHHHHHHHHH-S--STHHHHHHHHHHHHH-GGGHHHHHHHHHHHHHH CS
  Nucleos_tra2_C  98 faplafllGvpwedalkvgsllGtKlvlnefvayqeLsklkkkgelserseliatyaLcgFanfssigiqiGglgalaperrkdiaklglkalla 192
                      +p+a l+Gvp++d+  vg+l+G+K+ +nefva+++Ls+ ++ g++s+r+++ia+yaLcgFan++s+gi++Ggl++lap++r+++++ + +al+a
      KOO22072.1 279 GFPIARLMGVPTADCAFVGQLIGIKTATNEFVAFARLSDAIRDGSVSPRAVVIASYALCGFANVGSMGIMVGGLSTLAPHKRDVLSREVPRALVA 373
                     *********************************************************************************************** PP

                     HHHHHHHHHHHHH CS
  Nucleos_tra2_C 193 GtlasllsAaiaG 205
                     Gtla + +A++a+
      KOO22072.1 374 GTLAAFATACVAA 386
                     ***********97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (414 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       621  (0.0346366); expected 358.6 (0.02)
Passed bias filter:                      331  (0.0184617); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.24s 00:00:00.72 Elapsed: 00:00:00.40
# Mc/sec: 3120.89
//
Query:       KOO22073.1  [L=354]
Description: set domain protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (354 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       234  (0.0130515); expected 358.6 (0.02)
Passed bias filter:                      201  (0.0112109); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.41u 0.22s 00:00:00.63 Elapsed: 00:00:00.37
# Mc/sec: 2880.12
//
Query:       KOO22074.1  [L=935]
Description: sodium calcium exchanger 3-like protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.1e-36  124.6  33.9    6.4e-20   71.7   7.0    2.7  3  Na_Ca_ex       Sodium/calcium exchanger protein
      2e-32  111.4   0.2    4.9e-16   58.7   0.0    2.5  2  Calx-beta      Calx-beta domain
  ------ inclusion threshold ------
       0.23   11.1   0.0        6.5    6.4   0.0    2.2  2  CBF_beta       Core binding factor beta subunit


Domain annotation for each model (and alignments):
>> Na_Ca_ex  Sodium/calcium exchanger protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.2      0.73   4.4e+03      68      89 ..      78      99 ..      75     109 .. 0.65
   2 !   63.6  13.4   3.3e-21   1.9e-17       3     150 ..     157     325 ..     155     326 .. 0.91
   3 !   71.7   7.0   1.1e-23   6.4e-20       3     150 ..     747     930 ..     745     931 .. 0.88

  Alignments for each domain:
  == domain 1  score: -2.5 bits;  conditional E-value: 0.73
                HHHHHHHHHHHHHTHHHHHHHH CS
    Na_Ca_ex 68 ignvlGsnifnlllviGliali 89
                i+++ ++++  lllv+G+ + +
  KOO22074.1 78 ISTLRSVCCGLLLLVLGMLFGV 99
                6666667777777777776544 PP

  == domain 2  score: 63.6 bits;  conditional E-value: 3.3e-21
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHH..................TTCTHHHHHHHHHHHHHHHHHHHHHHHHHHT.TT..HHHHHHHHHHHHHHHHH CS
    Na_Ca_ex   3 fvlfilslllisvladflvssaeeiaks..................lgisgsvlGltllAlgnslpElissiiaalt.ge..vdlaignvlGsnifnll 80 
                 ++l+ + +l++++ ad+++  +e+i+++                    ++++v++ltl+Alg+s+pE+++sii +++ g   ++l++++++Gs++ nl+
  KOO22074.1 157 LALLSWTFLGVAIVADVFMAGIEQITSTettktvvlpsgemrrytvSVWNPTVASLTLMALGSSSPEILLSIIEIVGsGFyaGELGPSTIVGSAAYNLM 255
                 5778899*******************8789***************88*****************************735599***************** PP

                 THHHHHHHHHHBTTSSCECCHHHHHHHHHHHHHHHHHHHTCHHHHH..HTEEHHHHHHHHHHHHHHHHHHHH CS
    Na_Ca_ex  81 lviGlialigslkvdseslkldlgllllvallllllvlllllplfv..pgrltvleglvllllYalylvlsl 150
                 ++ ++++    ++  ++ ++ +l+++ ++ +++ll++++l+++l    p  ++v+eg+++++++ + +++s+
  KOO22074.1 256 IISAVSITA--VSDGGKRYIKELPVFYITGVASLLAYVWLIVILVYntPDIVDVWEGVATFVMFPILVYVSY 325
                 **9999999..456666778999****************887775599*********************986 PP

  == domain 3  score: 71.7 bits;  conditional E-value: 1.1e-23
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHHHHHHHHHHHTTT.HHHHHHHHHHHHHHHHHTHHHHHHHHHH.......BT CS
    Na_Ca_ex   3 fvlfilslllisvladflvssaeeiakslgisgsvlGltllAlgnslpElissiiaaltge.vdlaignvlGsnifnlllviGlialigs.......lk 93 
                 +++f+++l+li +l++++ + a+++++ +g+s+ v ++t++A g+slp++++s iaa t   +d +i n++Gsn +n+++++Gl++  ++         
  KOO22074.1 747 WACFLVALALIGALTAIIGDLASHMGCCMGLSKFVTAITFVAMGTSLPDTFASRIAAETEPyADASIVNITGSNSVNVFFGLGLPWMAAAiywaslgQE 845
                 789*******************************************************9656**************************99777555412 PP

                 TSSCE............................CCHHHHHHHHHHHHHHHHHHHTCHHHHH.....HTEEHHHHHHHHHHHHHHHHHHHH CS
    Na_Ca_ex  94 vdses............................lkldlgllllvallllllvlllllplfv.....pgrltvleglvllllYalylvlsl 150
                                                  l+++++++l va+l +++++    +l +     p + ++l ++ l++l+++y++ls+
  KOO22074.1 846 ----HddtwrdrysgepwyspgidigfavpagdLAYSVQVFLGVAVLGFATLIGRR-LLLGaelggPPVAKWLSAVFLVALWGVYIALSI 930
                 ....245557777788899999999999999999*********9999988777644.33347************************9987 PP

>> Calx-beta  Calx-beta domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.7   0.0   8.2e-20   4.9e-16      12     100 .]     438     525 ..     429     525 .. 0.92
   2 !   50.3   0.0   3.6e-17   2.1e-13       3      99 ..     540     636 ..     538     637 .. 0.97

  Alignments for each domain:
  == domain 1  score: 58.7 bits;  conditional E-value: 8.2e-20
                 EEEES-SEEEEECCGSEEEEEEEEES-..SS-EEEEEEEEESSS-TTTSB---EEEEEE-TT--EEEEEEE----TTTT--EEEEEEEE CS
   Calx-beta  12 vigfeeteysvsEsdgvvevcVvrksgelerevvVsyrteDgtAtagsDYeavegeLvFkpdetekevnvtivdDdvleedenFfveLs 100
                 +++  ++   + E++g v++++vr+ g++++  +V y t+Dg+At+g D+++++g + F p+ t ++v+v+i  D   e+de F+v+Ls
  KOO22074.1 438 RVQWAQSWCVCREAQGRVTLTIVRH-GDASQACSVYYDTKDGSATEGVDFQKAAGLVSFAPGVTLQTVSVKIFGDVAEERDEAFTVVLS 525
                 566667777899************9.5569********************************************************996 PP

  == domain 2  score: 50.3 bits;  conditional E-value: 3.6e-17
                 XXXXXXXX-.EEEES-SEEEEECCGSEEEEEEEEES-..SS-EEEEEEEEESSS-TTTSB---EEEEEE-TT--EEEEEEE----TTTT--EEEEEEE CS
   Calx-beta   3 vtilddDev.vigfeeteysvsEsdgvvevcVvrksgelerevvVsyrteDgtAtagsDYeavegeLvFkpdetekevnvtivdDdvleedenFfveL 99 
                 vti+dd  +  + f+++e++v+Es + ++++Vvr+ g  e++v    +t Dg+   g  Y a++g+LvF+++  ek ++v+++d  ++ ++++F v L
  KOO22074.1 540 VTIQDDYGPgELHFDSREIEVLESAQRASFKVVRTHG-CEGTVACLWETRDGSSVTGLGYVAASGKLVFEEGVVEKMIEVELIDTGMYHRSDEFQVML 636
                 899**99****************************99.5********************************************************988 PP

>> CBF_beta  Core binding factor beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.4   0.0    0.0011       6.5      76     122 ..     474     520 ..     447     544 .. 0.76
   2 ?    2.1   0.0     0.023   1.4e+02      53      73 ..     782     802 ..     773     819 .. 0.77

  Alignments for each domain:
  == domain 1  score: 6.4 bits;  conditional E-value: 0.0011
    CBF_beta  76 eqekkpskeevdfekeaGkvhlkskfilNgvcvkvkGwldlerLdGv 122
                  ++   ++e vdf+k aG v     ++l  v vk+ G +  er +  
  KOO22074.1 474 DTKDGSATEGVDFQKAAGLVSFAPGVTLQTVSVKIFGDVAEERDEAF 520
                 3344556899***************************9999886655 PP

  == domain 2  score: 2.1 bits;  conditional E-value: 0.023
    CBF_beta  53 aeiafvatGtNlqlkfepast 73 
                 + i+fva+Gt l+ +f +   
  KOO22074.1 782 TAITFVAMGTSLPDTFASRIA 802
                 78**********999987643 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (935 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       680  (0.0379274); expected 358.6 (0.02)
Passed bias filter:                      423  (0.0235931); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.70u 0.26s 00:00:00.96 Elapsed: 00:00:00.41
# Mc/sec: 6769.80
//
Query:       KOO22075.1  [L=656]
Description: beta-ig-h3 fasciclin, partial [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.4e-72  241.2   0.1    6.9e-35  120.1   0.0    2.3  2  Fasciclin        Fasciclin domain
    7.2e-39  133.2   0.0    1.5e-38  132.3   0.0    1.5  1  AAA              ATPase family associated with various cellul
    1.4e-08   34.4   0.0    1.4e-08   34.4   0.0    2.4  2  AAA_lid_3        AAA+ lid domain
    3.7e-06   26.8   0.0    8.3e-06   25.7   0.0    1.6  1  Vps4_C           Vps4 C terminal oligomerisation domain
    1.4e-05   24.9   0.2    3.8e-05   23.5   0.0    1.8  1  RuvB_N           Holliday junction DNA helicase RuvB P-loop d
    6.8e-05   22.9   0.3    0.00032   20.7   0.3    2.2  1  AAA_5            AAA domain (dynein-related subfamily)
    7.4e-05   23.2   0.6     0.0059   17.0   0.0    2.8  2  AAA_16           AAA ATPase domain
    9.7e-05   21.7   0.0    0.00034   19.9   0.0    1.9  1  TIP49            TIP49 P-loop domain
    0.00013   22.2   0.2       0.04   14.2   0.0    2.4  2  AAA_22           AAA domain
    0.00031   20.9   0.0    0.00067   19.8   0.0    1.5  1  AAA_2            AAA domain (Cdc48 subfamily)
    0.00079   19.2   0.0     0.0019   17.9   0.0    1.6  1  IstB_IS21        IstB-like ATP binding protein
  ------ inclusion threshold ------
       0.01   15.2   0.2      0.024   14.0   0.1    1.6  1  Mg_chelatase     Magnesium chelatase, subunit ChlI
      0.019   15.3   0.1        1.4    9.3   0.0    2.3  2  Cloacin_immun    Cloacin immunity protein
       0.02   15.3   0.0      0.039   14.3   0.0    1.5  1  RNA_helicase     RNA helicase
      0.021   14.8   0.0      0.035   14.1   0.0    1.3  1  AAA_14           AAA domain
      0.021   14.3   5.3        1.5    8.2   0.5    3.0  3  PcrB             PcrB family
      0.041   13.3   0.0        7.2    6.0   0.0    2.2  2  TniB             Bacterial TniB protein
      0.054   13.6   9.9        1.4    9.1   1.5    2.6  2  DUF211           Uncharacterized ArCR, COG1888
      0.059   12.9   0.0       0.13   11.8   0.0    1.5  1  AAA_7            P-loop containing dynein motor region
      0.086   13.3   0.0       0.44   11.0   0.0    2.4  1  AAA_17           AAA domain
       0.09   12.9   0.0       0.21   11.8   0.0    1.6  1  AAA_33           AAA domain
      0.096   12.4   0.1       0.96    9.1   0.0    2.1  2  Sigma54_activat  Sigma-54 interaction domain
       0.11   11.6   0.0       0.19   10.8   0.0    1.3  1  Parvo_NS1        Parvovirus non-structural protein NS1
       0.11   12.2   6.5        2.9    7.5   1.0    2.4  2  HpaB_N           4-hydroxyphenylacetate 3-hydroxylase N termi
       0.12   13.0   0.0       0.24   12.0   0.0    1.6  1  AAA_18           AAA domain
       0.18   12.1   0.1         40    4.6   0.0    2.6  2  DUF5495          Family of unknown function (DUF5495)
       0.19   11.2   4.4       0.29   10.6   0.1    2.9  3  PhoH             PhoH-like protein
          8    6.8   9.5        1.5    9.2   0.1    3.4  4  AAA_19           AAA domain


Domain annotation for each model (and alignments):
>> Fasciclin  Fasciclin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  119.1   0.0   2.1e-37   1.3e-34       2     128 .]     391     515 ..     390     515 .. 0.96
   2 !  120.1   0.0   1.1e-37   6.9e-35       2     128 .]     531     655 ..     530     655 .. 0.95

  Alignments for each domain:
  == domain 1  score: 119.1 bits;  conditional E-value: 2.1e-37
                 GGHHHHHHHHTTTCCCCCTCSSSSEEEEEE-HHHHCCCHHHHHHHHHT..CHHHHHHHHHTTEEESSS-HHHHHHH.HEEEECCTTSSEEEEEEEGGTT CS
   Fasciclin   2 dlstfvsllekaglaeeLnkkdgglTvFaPtneAfaklppellaklln..dkkklkeiLkyHvvpetvsssalkka.setlatllegaklrvniekgng 97 
                  ++t++++l +agl+e++ k++g++TvFaPt++Afaklp+++ ++ll+  +k+kl++iL+yHvv+++v++s ++++  +++at ++ga+ ++++    +
  KOO22075.1 391 SFKTLAAALGAAGLVETM-KSAGPFTVFAPTDDAFAKLPKGTVDDLLKpeNKAKLAAILTYHVVSGKVMASTVVTMdGKKVAT-VNGAEATIKVG--AD 485
                 699***************.888**********************************************9999999966789*9.***********..99 PP

                 EEEETTEEEEEEEEEEESSEEEEEESS-TSX CS
   Fasciclin  98 tvtvngkarvvrsdieatngvihvidkvLlp 128
                  v+v+g a+vv++die++ngvihvid+v+lp
  KOO22075.1 486 GVMVDG-AKVVTTDIECANGVIHVIDSVILP 515
                 9*****.**********************98 PP

  == domain 2  score: 120.1 bits;  conditional E-value: 1.1e-37
                 GGHHHHHHHHTTTCCCCCTCSSSSEEEEEE-HHHHCCCHHHHHHHHHT..CHHHHHHHHHTTEEESSS-HHHHHHHHEEEECCTTSSEEEEEEEGGTTE CS
   Fasciclin   2 dlstfvsllekaglaeeLnkkdgglTvFaPtneAfaklppellaklln..dkkklkeiLkyHvvpetvsssalkkasetlatllegaklrvniekgngt 98 
                  ++t++++l +agl+e++ k++g++TvFaPt++Afaklp+++ ++ll+  +k+kl++iL+yHvv+++v++s +++++++ a +++g+++++++    + 
  KOO22075.1 531 SFKTLAAALGAAGLVETM-KSAGPFTVFAPTDDAFAKLPKGTVEDLLKpeNKAKLAAILTYHVVSGKVMASTVVTMDGKKAATVNGQEVSIKVG--ADG 626
                 699***************.888***************************************************9996655555***********..999 PP

                 EEETTEEEEEEEEEEESSEEEEEESS-TSX CS
   Fasciclin  99 vtvngkarvvrsdieatngvihvidkvLlp 128
                 v+v+g a+vv++die++ngvihvid+v+lp
  KOO22075.1 627 VMVDG-AKVVTTDIECANGVIHVIDSVILP 655
                 *****.**********************98 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  132.3   0.0   2.3e-41   1.5e-38       1     131 [.      72     202 ..      72     203 .. 0.95

  Alignments for each domain:
  == domain 1  score: 132.3 bits;  conditional E-value: 2.3e-41
                 EEEESSTTSSHHHHHHHHHHHHTHEEEEEETTTCSSSSTTHHHHHHHHHHHHHHHTSTSEEEEEETGGGHHHHHTTCCCHHHHHHHHHHHHHHHHTTTS CS
         AAA   1 vllyGppGtGKTllakavakelgvefleisgsellskyvgesekkirelfkeakekakpsilfiDEidalaksrsgseseeeervvnqLlteldgvkkk 99 
                 +ll+GppGtGKTl+aka+a+e++++f++is s+l+sk++ge+ek +r+lf+ a++k+ p ++fiDE+d++ ++r+++e+e + r+ n+Ll ++dg  + 
  KOO22075.1  72 LLLFGPPGTGKTLIAKAIATEASSTFFSISSSSLMSKWMGEGEKMVRALFAVARAKQ-PAVIFIDEVDSVLSQRREGEQEGTIRIKNELLVQIDGAGST 169
                 69******************************************************9.****************999*****************99888 PP

                 ..SSTEEEEEEESSGGGSTHHHHSTTSSEEEETT CS
         AAA 100 ..eskvivigatnrpdkldpallrgRfdrkieie 131
                   e +++v+gatnrp++ld+a + +R+++++ i+
  KOO22075.1 170 dqEVRLLVVGATNRPQELDDAAR-RRLQKRLLIP 202
                 5566789****************.7****99887 PP

>> AAA_lid_3  AAA+ lid domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.4   0.0   2.2e-11   1.4e-08       3      33 ..     230     260 ..     228     268 .. 0.94
   2 ?   -2.2   0.1       6.1   3.9e+03      22      30 ..     284     292 ..     272     306 .. 0.52

  Alignments for each domain:
  == domain 1  score: 34.4 bits;  conditional E-value: 2.2e-11
   AAA_lid_3   3 dlkeLAerTeGySGADlaalcreAallAlrr 33 
                 d++ ++ +T+GySG D+a lcreAa++ lr+
  KOO22075.1 230 DFELIVGQTDGYSGSDMAGLCREAAMEPLRD 260
                 88999************************97 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 6.1
   AAA_lid_3  22 lcreAallA 30 
                 +cr   ++A
  KOO22075.1 284 VCRDDFRAA 292
                 344444444 PP

>> Vps4_C  Vps4 C terminal oligomerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.7   0.0   1.3e-08   8.3e-06      27      61 .]     282     316 ..     275     316 .. 0.92

  Alignments for each domain:
  == domain 1  score: 25.7 bits;  conditional E-value: 1.3e-08
      Vps4_C  27 PpvtlkDflkalkkarptVskeDLekheeFTkefG 61 
                 +pv ++Df +al+++rp+Vs+ +Le +e +  ++G
  KOO22075.1 282 RPVCRDDFRAALCQVRPSVSQRELEGFEAWNLQYG 316
                 699***************************98887 PP

>> RuvB_N  Holliday junction DNA helicase RuvB P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.5   0.0   5.9e-08   3.8e-05      34     152 ..      70     194 ..      61     199 .. 0.63

  Alignments for each domain:
  == domain 1  score: 23.5 bits;  conditional E-value: 5.9e-08
      RuvB_N  34 dhvllyGpPGlGkttlakiiakelgvkl.kitsgPvlek....agdla.all..tnleekdvlfideihrlsraveevlysamedfrldivig.kGpsa 123
                   +ll+GpPG Gkt +ak ia+e  +++  i+s+  ++k       ++ al+  ++ ++  v+fide+  + ++  e        ++ +++++ +G+++
  KOO22075.1  70 RGLLLFGPPGTGKTLIAKAIATEASSTFfSISSSSLMSKwmgeGEKMVrALFavARAKQPAVIFIDEVDSVLSQRREGEQEGTIRIKNELLVQiDGAGS 168
                 5689*******************99886155566666553222223441443113445668*******9887776665555555555555543234444 PP

      RuvB_N 124 rsikldlpkftlvgattragllssPlrdr 152
                 +  +++   + +vgat r   l    r r
  KOO22075.1 169 TDQEVR---LLVVGATNRPQELDDAARRR 194
                 444443...34677777777776666666 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.7   0.3     5e-07   0.00032       2     137 ..      72     194 ..      71     198 .. 0.67

  Alignments for each domain:
  == domain 1  score: 20.7 bits;  conditional E-value: 5e-07
                 EEEE--SSSSHHHHHHHGGGGBS--EEEEE--TT--HHHHH--B--.........--------G-SEEEEESGGG--HHHHHHHHHHHHSSEEE..-SS CS
       AAA_5   2 vlLvGppGtgKselaerlaaalnreveyvqltrdtteedlkgrreikngttslvdsplvraaregeilvlDEveraesevlnsLlslleerrllleegg 100
                 +lL GppGtgK+ +a+ +a    ++++ +       ++ l  ++   +g++  +   +v  a++++++++DEv+           s+l++rr    eg+
  KOO22075.1  72 LLLFGPPGTGKTLIAKAIATEASSTFFSIS------SSSLMSKWM-GEGEKMVRALFAVARAKQPAVIFIDEVD-----------SVLSQRREGEQEGT 152
                 89****************988888887654......456777887.47777888888999999***********...........55555555533333 PP

                 SEEE---..................-EEEEEESS--.-TT-TTHHHHTT CS
       AAA_5 101 elvkaknddller............frviatanpldrslnelspalrsR 137
                  ++k +    l +            + v++++n+++    el+ a r+R
  KOO22075.1 153 IRIKNEL---LVQidgagstdqevrLLVVGATNRPQ----ELDDAARRR 194
                 3332222...22223455555554456666666666....555565555 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.0   0.0   9.1e-06    0.0059      20      51 ..      66      96 ..      55     109 .. 0.80
   2 ?    3.1   0.0      0.17   1.1e+02     124     146 ..     117     139 ..     113     147 .. 0.76

  Alignments for each domain:
  == domain 1  score: 17.0 bits;  conditional E-value: 9.1e-06
      AAA_16 20 rsgrpelvllsGesGvGKsslvrellralekd 51
                r++ p+ +ll G++G+GK+ ++++++++++ +
  KOO22075.1 66 REP-PRGLLLFGPPGTGKTLIAKAIATEASST 96
                322.59********************988765 PP

  == domain 2  score: 3.1 bits;  conditional E-value: 0.17
      AAA_16 124 krll.allsrderplvlvlDdlqw 146
                  r+l a ++  ++p v+++D+++ 
  KOO22075.1 117 VRALfAVARA-KQPAVIFIDEVDS 139
                 5566588888.788*******996 PP

>> TIP49  TIP49 P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.9   0.0   5.4e-07   0.00034      50     103 ..      69     120 ..      56     163 .. 0.86

  Alignments for each domain:
  == domain 1  score: 19.9 bits;  conditional E-value: 5.4e-07
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
       TIP49  50 GravLlaGpsgtGktalaiaiskelgedvpfvalsgsevyslevkktevltqal 103
                  r++Ll Gp+gtGkt +a ai+ e +    f ++s+s + s  +   e +++al
  KOO22075.1  69 PRGLLLFGPPGTGKTLIAKAIATEAS--STFFSISSSSLMSKWMGEGEKMVRAL 120
                 599********************987..57999********9999999888776 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.2   0.0   6.3e-05      0.04       8      29 ..      72      93 ..      66     110 .. 0.81
   2 ?    5.6   0.0     0.028        18      77     112 ..     115     153 ..     110     186 .. 0.57

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 6.3e-05
      AAA_22  8 lvvtGesGtGKTtllrrlleql 29
                l+++G++GtGKT+ ++ ++ ++
  KOO22075.1 72 LLLFGPPGTGKTLIAKAIATEA 93
                89***************99987 PP

  == domain 2  score: 5.6 bits;  conditional E-value: 0.028
      AAA_22  77 ellealeqalraravielliiDEaqh.lr.s..eealeeL 112
                  +++al   +ra++  +++ iDE++  l+ +   e+  ++
  KOO22075.1 115 KMVRALFAVARAKQP-AVIFIDEVDSvLSqRreGEQEGTI 153
                 555666666777777.9*********77451454433333 PP

>> AAA_2  AAA domain (Cdc48 subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.8   0.0     1e-06   0.00067       7     106 ..      73     166 ..      68     176 .. 0.78

  Alignments for each domain:
  == domain 1  score: 19.8 bits;  conditional E-value: 1e-06
                 EEE--TTSSHHHHHHHHHHHTT-....-EEEEEGGG---..----THHHHHHHHHTTT-HHHHTTSEEEEETGGG-------------HHHHHHHHHHH CS
       AAA_2   7 lllgptgvGktelakalaellfvkkekkliradaselle..eeevehlvsrligappgyvgaeegGivllDEidKihpkessgadvSregVqrdLLqil 103
                 ll gp g+Gkt++aka+a   +    +++  +  s+l+     e e+     + a  +  +a++  ++++DE+d + +++++g++     + + LL  +
  KOO22075.1  73 LLFGPPGTGKTLIAKAIATEAS----STFFSISSSSLMSkwMGEGEK----MVRALFAVARAKQPAVIFIDEVDSVLSQRREGEQEGTIRIKNELLVQI 163
                 788***************9998....599999999999933334444....4555567889999*************9877776666667777777777 PP

                 H-- CS
       AAA_2 104 egg 106
                 +g+
  KOO22075.1 164 DGA 166
                 766 PP

>> IstB_IS21  IstB-like ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.9   0.0     3e-06    0.0019      49     117 ..      71     137 ..      45     149 .. 0.76

  Alignments for each domain:
  == domain 1  score: 17.9 bits;  conditional E-value: 3e-06
   IstB_IS21  49 nivllGpsGvGKshlaialgveavraglsvlfvrvedLveelkrarrdgklaralkrllkvdllilDdl 117
                 +++l+Gp+G+GK+ +a a+++ea  + +s++  +   + + +   ++  ++  a++r  +++++ +D++
  KOO22075.1  71 GLLLFGPPGTGKTLIAKAIATEASSTFFSISSSS--LMSKWMGEGEKMVRALFAVARAKQPAVIFIDEV 137
                 689*******************988777765333..234445555555555566666666666666665 PP

>> Mg_chelatase  Magnesium chelatase, subunit ChlI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.1   3.7e-05     0.024      25      43 ..      72      90 ..      69     117 .. 0.92

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 3.7e-05
  Mg_chelatase 25 lllvGppGsGKtmlakrlp 43
                  lll+GppG+GKt++ak+++
    KOO22075.1 72 LLLFGPPGTGKTLIAKAIA 90
                  89**************986 PP

>> Cloacin_immun  Cloacin immunity protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.5   0.0      0.15        94      11      53 ..     468     511 ..     462     518 .. 0.83
   2 ?    9.3   0.0    0.0022       1.4      11      52 ..     608     650 ..     602     654 .. 0.83

  Alignments for each domain:
  == domain 1  score: 3.5 bits;  conditional E-value: 0.15
  Cloacin_immun  11 kkteefvGeeyskDlGdDgslieklglplddn.innGafdvkke 53 
                    kk + + G e    +G Dg +++   +   d    nG+  v ++
     KOO22075.1 468 KKVATVNGAEATIKVGADGVMVDGAKVVTTDIeCANGVIHVIDS 511
                    8889999***************9987766554499999988765 PP

  == domain 2  score: 9.3 bits;  conditional E-value: 0.0022
  Cloacin_immun  11 kkteefvGeeyskDlGdDgslieklglplddn.innGafdvkk 52 
                    kk + + G+e+s  +G Dg +++   +   d    nG+  v +
     KOO22075.1 608 KKAATVNGQEVSIKVGADGVMVDGAKVVTTDIeCANGVIHVID 650
                    89999*****************998776655449999988876 PP

>> RNA_helicase  RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   0.0   6.1e-05     0.039       2      36 ..      73     107 ..      72     175 .. 0.62

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 6.1e-05
  RNA_helicase   2 wlyGpsgeGKStlakeLakallkkl.....klkkkdsvys 36 
                   +l+Gp+g+GK+++ak +a++ ++++           s++s
    KOO22075.1  73 LLFGPPGTGKTLIAKAIATEASSTFfsissS-----SLMS 107
                   79******************99988444442.....3333 PP

>> AAA_14  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   0.0   5.4e-05     0.035       5      76 ..      72     140 ..      69     203 .. 0.79

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 5.4e-05
      AAA_14   5 lvitGaRrvGKTtllkqlikellvkkesilyinldderdkkladpekllelileklkeekktylflDEiqev 76 
                 l++ G+  +GKT ++k ++ e     + ++ i+  +   k + + ek+ +++++ +++++  ++f+DE+  v
  KOO22075.1  72 LLLFGPPGTGKTLIAKAIATEAS---STFFSISSSSLMSKWMGEGEKMVRALFAVARAKQPAVIFIDEVDSV 140
                 6789**************98888...89999999998888888887888888887656799********987 PP

>> PcrB  PcrB family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.0       1.6     1e+03      43      72 ..     112     141 ..     104     144 .. 0.87
   2 ?    8.2   0.5    0.0024       1.5       9      45 ..     462     498 ..     456     526 .. 0.82
   3 ?    6.6   0.3    0.0076       4.9       9      45 ..     602     638 ..     596     655 .. 0.82

  Alignments for each domain:
  == domain 1  score: -1.1 bits;  conditional E-value: 1.6
                 HHHHHHHHHHHHCTSSS-EEEEESSGGG-- CS
        PcrB  43 tldntvrllkkvsriklPivlepsnvegvv 72 
                 + ++ vr+l  v r k P v++  +v++v 
  KOO22075.1 112 EGEKMVRALFAVARAKQPAVIFIDEVDSVL 141
                 5689999*****************999985 PP

  == domain 2  score: 8.2 bits;  conditional E-value: 0.0024
                 EEEE-TTSS-CHHHHHHHHCTT-SEEEEECSTCHHHH CS
        PcrB   9 ltklDPeeenpdEiveiviesgtDavmigGsqsvtld 45 
                 ++ +D ++  + + +e+ i+ g+D+vm+ G++ vt d
  KOO22075.1 462 VVTMDGKKVATVNGAEATIKVGADGVMVDGAKVVTTD 498
                 5667888888888999****************99987 PP

  == domain 3  score: 6.6 bits;  conditional E-value: 0.0076
                 EEEE-TTSS-CHHHHHHHHCTT-SEEEEECSTCHHHH CS
        PcrB   9 ltklDPeeenpdEiveiviesgtDavmigGsqsvtld 45 
                 ++ +D ++  + +  e+ i+ g+D+vm+ G++ vt d
  KOO22075.1 602 VVTMDGKKAATVNGQEVSIKVGADGVMVDGAKVVTTD 638
                 5567777888888889999*************99987 PP

>> TniB  Bacterial TniB protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.0   0.0     0.011       7.2      33      58 ..      67      92 ..      52     103 .. 0.82
   2 ?    5.0   0.0     0.023        14     106     155 ..     115     161 ..     105     176 .. 0.72

  Alignments for each domain:
  == domain 1  score: 6.0 bits;  conditional E-value: 0.011
        TniB 33 krmpnlllvGdsnnGKtmivekFarl 58
                + ++ lll+G++ +GKt i++  a +
  KOO22075.1 67 EPPRGLLLFGPPGTGKTLIAKAIATE 92
                44589**************9987655 PP

  == domain 2  score: 5.0 bits;  conditional E-value: 0.023
        TniB 106 kleqqvlrllrelkvrvLiiDEihnllagsarkqreflnalksLgnelki 155
                 k+ ++  ++ r+ ++ v+ iDE++++l+ +++  +e +     ++nel +
  KOO22075.1 115 KMVRALFAVARAKQPAVIFIDEVDSVLSQRREGEQEGTIR---IKNELLV 161
                 55666778889999*************7776665554443...3455555 PP

>> DUF211  Uncharacterized ArCR, COG1888
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.1   1.5    0.0022       1.4      37      80 ..     470     514 ..     432     523 .. 0.75
   2 ?    8.6   1.6    0.0031         2      35      79 ..     613     653 ..     572     656 .] 0.65

  Alignments for each domain:
  == domain 1  score: 9.1 bits;  conditional E-value: 0.0022
                 EEEE-SSEEEEEEEEEESSE-HHH.HHHHHHCTT-EEEEEEEEEE CS
      DUF211  37 vkevDketenlkitieGenidyee.ieeaieelggvihSiDevva 80 
                 v  v     ++k+   G  +d  + +++ ie  +gvih iD v+ 
  KOO22075.1 470 VATVNGAEATIKVGADGVMVDGAKvVTTDIECANGVIHVIDSVIL 514
                 45555566789999999999976615678*************985 PP

  == domain 2  score: 8.6 bits;  conditional E-value: 0.0031
                 EEEEEE-SSEEEEEEEEEESSE-HHH.HHHHHHCTT-EEEEEEEEE CS
      DUF211  35 itvkevDketenlkitieGenidyee.ieeaieelggvihSiDevv 79 
                 +  +e      ++k+   G  +d  + +++ ie  +gvih iD v+
  KOO22075.1 613 VNGQE-----VSIKVGADGVMVDGAKvVTTDIECANGVIHVIDSVI 653
                 33333.....345555566666654416788*************98 PP

>> AAA_7  P-loop containing dynein motor region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0    0.0002      0.13      35      80 ..      71     107 ..      61     146 .. 0.65

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 0.0002
       AAA_7  35 pvllvGptGtGKtviikdllkkldkekylsltinfsaqtsanqlqd 80 
                  +ll Gp GtGKt+i+k + ++ +++ +++         s+++l++
  KOO22075.1  71 GLLLFGPPGTGKTLIAKAIATEASSTFFSI---------SSSSLMS 107
                 579***************988887332222.........2333334 PP

>> AAA_17  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   0.00069      0.44       1      36 [.      75     112 ..      75     156 .. 0.79

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00069
                 EE-TTSSHHHHHHHHHHHHTEEEEEH..HHHHHHHHHT CS
      AAA_17   1 lGgPGsGKgtqceklvekygfthlsa..Gdllreeakr 36 
                 +G+PG GK+ +++ ++ +   t++s   ++l+ + + +
  KOO22075.1  75 FGPPGTGKTLIAKAIATEASSTFFSIssSSLMSKWMGE 112
                 6****************997777654216677665544 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   0.00032      0.21       3      42 ..      73     114 ..      72     166 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 0.00032
      AAA_33   3 llvGlpGsGKstlaerllkklg..avllssdtlrrrlfgtdq 42 
                 ll G+pG+GK+  a+ ++ +    ++ +ss +l+++  g+++
  KOO22075.1  73 LLFGPPGTGKTLIAKAIATEASstFFSISSSSLMSKWMGEGE 114
                 789**************9888888888999998887777554 PP

>> Sigma54_activat  Sigma-54 interaction domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.1   0.0    0.0015      0.96      24      46 ..      71      93 ..      60     111 .. 0.80
   2 ?    0.5   0.1      0.68   4.3e+02      95     146 ..     130     186 ..     118     204 .. 0.63

  Alignments for each domain:
  == domain 1  score: 9.1 bits;  conditional E-value: 0.0015
                     -EEEECSTTSSHHHHHHHHHHHS CS
  Sigma54_activat 24 svlitGesGtGKellaraiheas 46
                      +l+ G  GtGK+l+a+ai ++ 
       KOO22075.1 71 GLLLFGPPGTGKTLIAKAIATEA 93
                     5799**************97654 PP

  == domain 2  score: 0.5 bits;  conditional E-value: 0.68
                      SEEEEETGGGS-HH....HHHHHHHHHHHSEEESBT.SSSEEE--EEEEEEESS-HH CS
  Sigma54_activat  95 GtlfLDeigelple....lQekLlrvlqegevervG.sskeikvdvriiaatnedle 146
                       ++f+De+ ++  +     Qe  +r+ +e  v+  G +s+ ++v + ++ atn+  e
       KOO22075.1 130 AVIFIDEVDSVLSQrregEQEGTIRIKNELLVQIDGaGSTDQEVRLLVVGATNRPQE 186
                      578888888765431222477777777776666666335678899999999997543 PP

>> Parvo_NS1  Parvovirus non-structural protein NS1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0    0.0003      0.19     117     136 ..      72      91 ..      59      99 .. 0.87

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.0003
   Parvo_NS1 117 vwfyGpantGktnlaeaIak 136
                 ++++Gp+ tGkt +a+aIa+
  KOO22075.1  72 LLLFGPPGTGKTLIAKAIAT 91 
                 5789**************96 PP

>> HpaB_N  4-hydroxyphenylacetate 3-hydroxylase N terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.5   1.0    0.0045       2.9     174     199 ..     482     507 ..     459     530 .. 0.78
   2 ?    7.3   0.4    0.0052       3.3     173     197 ..     621     645 ..     571     652 .. 0.81

  Alignments for each domain:
  == domain 1  score: 7.5 bits;  conditional E-value: 0.0045
                 E-SSEEEEEEEEEEEE-.--SSEEEE CS
      HpaB_N 174 etddGivVrGakvlaTgaaladeilv 199
                   +dG++V Gakv++T   +a+ ++ 
  KOO22075.1 482 VGADGVMVDGAKVVTTDIECANGVIH 507
                 5679*************999986653 PP

  == domain 2  score: 7.3 bits;  conditional E-value: 0.0052
                 EE-SSEEEEEEEEEEEE-.--SSEE CS
      HpaB_N 173 eetddGivVrGakvlaTgaaladei 197
                 +  +dG++V Gakv++T   +a+ +
  KOO22075.1 621 KVGADGVMVDGAKVVTTDIECANGV 645
                 44679************99888765 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   0.00037      0.24       2      25 ..      73      99 ..      72     163 .. 0.75

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 0.00037
      AAA_18  2 lltGtpGvGKttlakeLskrlgf...g 25
                ll G+pG+GKt +ak+++ +  +   +
  KOO22075.1 73 LLFGPPGTGKTLIAKAIATEASStffS 99
                689**************8875334552 PP

>> DUF5495  Family of unknown function (DUF5495)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.5   0.0     0.064        41      55      78 ..     391     414 ..     381     418 .. 0.86
   2 ?    4.6   0.0     0.062        40      55      78 ..     531     554 ..     518     558 .. 0.87

  Alignments for each domain:
  == domain 1  score: 4.5 bits;  conditional E-value: 0.064
     DUF5495  55 qfdsldaalgaanlmkclklihpl 78 
                  f +l aalgaa l+  +k   p+
  KOO22075.1 391 SFKTLAAALGAAGLVETMKSAGPF 414
                 6999************99987775 PP

  == domain 2  score: 4.6 bits;  conditional E-value: 0.062
     DUF5495  55 qfdsldaalgaanlmkclklihpl 78 
                  f +l aalgaa l+  +k   p+
  KOO22075.1 531 SFKTLAAALGAAGLVETMKSAGPF 554
                 6999************99987775 PP

>> PhoH  PhoH-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.1   0.00045      0.29      24      44 ..      74      94 ..      70     100 .. 0.88
   2 ?    0.2   0.2      0.69   4.4e+02      16      46 ..     377     407 ..     371     427 .. 0.84
   3 ?   -1.0   0.0       1.5   9.8e+02      18      46 ..     519     547 ..     510     578 .. 0.84

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00045
                EE--TTSSTTHHHHHHHHHHH CS
        PhoH 24 aiGpaGtGKtylavalaveal 44
                 +Gp GtGKt++a a+a ea 
  KOO22075.1 74 LFGPPGTGKTLIAKAIATEAS 94
                68**************99875 PP

  == domain 2  score: 0.2 bits;  conditional E-value: 0.69
                 HHH-SEEEEE--TTSSTTHHHHHHHHHHHHT CS
        PhoH  16 lkkndivfaiGpaGtGKtylavalavealkk 46 
                 + ++div  +  aG+ Kt+ a   a+ +++ 
  KOO22075.1 377 MAAKDIVDTAVAAGSFKTLAAALGAAGLVET 407
                 6689999999********9999999888776 PP

  == domain 3  score: -1.0 bits;  conditional E-value: 1.5
                 H-SEEEEE--TTSSTTHHHHHHHHHHHHT CS
        PhoH  18 kndivfaiGpaGtGKtylavalavealkk 46 
                 k div  +  aG+ Kt+ a   a+ +++ 
  KOO22075.1 519 KPDIVDTAVAAGSFKTLAAALGAAGLVET 547
                 6688999999******9999998888776 PP

>> AAA_19  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.2   0.1    0.0023       1.5      12      34 ..      71      93 ..      65     108 .. 0.83
   2 ?   -2.6   0.0        10   6.4e+03     101     114 ..     127     140 ..      92     145 .. 0.69
   3 ?    0.4   0.5       1.1   7.2e+02      19      84 ..     389     469 ..     373     507 .. 0.66
   4 ?    0.5   0.2       1.1   6.9e+02      19      83 ..     529     608 ..     514     640 .. 0.66

  Alignments for each domain:
  == domain 1  score: 9.2 bits;  conditional E-value: 0.0023
      AAA_19 12 vllvtaGpGtGKTrvlkhivall 34
                 ll+ ++pGtGKT + k+i +++
  KOO22075.1 71 GLLLFGPPGTGKTLIAKAIATEA 93
                5799*********9999887665 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 10
      AAA_19 101 qeeellivDEfqdv 114
                 ++ +++++DE+  v
  KOO22075.1 127 KQPAVIFIDEVDSV 140
                 23458999998765 PP

  == domain 3  score: 0.4 bits;  conditional E-value: 1.1
      AAA_19  19 pGtGKTrvlkhivallvelggvkpeeillvaftgrAakelrerl.aalgae........atTiHrlal.......ldfddll 84 
                 +G+ KT       a lve+ + ++ ++++ a+t  A  +l + + + l+++        + T+H ++        +++d+++
  KOO22075.1 389 AGSFKTLAAALGAAGLVETMK-SAGPFTVFAPTDDAFAKLPKGTvDDLLKPenkaklaaILTYHVVSGkvmastvVTMDGKK 469
                 667777776666677777764.468999999999999999986613444448888888888999775555555553333333 PP

  == domain 4  score: 0.5 bits;  conditional E-value: 1.1
      AAA_19  19 pGtGKTrvlkhivallvelggvkpeeillvaftgrAakelrerl.aalgae........atTiHrlal.......ldfddl 83 
                 +G+ KT       a lve+ + ++ ++++ a+t  A  +l + + + l+++        + T+H ++        +++d++
  KOO22075.1 529 AGSFKTLAAALGAAGLVETMK-SAGPFTVFAPTDDAFAKLPKGTvEDLLKPenkaklaaILTYHVVSGkvmastvVTMDGK 608
                 566666666666666666664.46899999999999999998661334444888888888888877555555555333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (656 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       605  (0.0337442); expected 358.6 (0.02)
Passed bias filter:                      434  (0.0242066); expected 358.6 (0.02)
Passed Vit filter:                        82  (0.0045736); expected 17.9 (0.001)
Passed Fwd filter:                        28  (0.00156172); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              28  [number of targets reported over threshold]
# CPU time: 0.63u 0.31s 00:00:00.94 Elapsed: 00:00:00.44
# Mc/sec: 4450.69
//
Query:       KOO22076.1  [L=499]
Description: conserved unknown protein, partial [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      7e-15   54.9   3.2    1.4e-06   28.2   1.1    3.6  3  TIG       IPT/TIG domain


Domain annotation for each model (and alignments):
>> TIG  IPT/TIG domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.5   0.0   1.3e-05      0.24      10      61 ..       2      70 ..       1      84 [. 0.91
   2 !   12.9   0.2     5e-06      0.09      46      78 ..     383     424 ..     356     431 .. 0.73
   3 !   28.2   1.1     8e-11   1.4e-06       1      61 [.     437     496 ..     437     499 .] 0.93

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 1.3e-05
         TIG 10 sgsasgGttititGtnF..............gtnssdssvtiggtpctvta...svssttlvcttPpgp 61
                sg+ +g+t+++i+G++F               +   d ++++g t++  +a   + + +tl c +P++ 
  KOO22076.1  2 SGPRAGNTSVLISGSDFlipatptaalvaavASHGLDFRCRFGRTAAFHIApatYLNASTLLCASPARE 70
                78999*************************99999**********997666999************976 PP

  == domain 2  score: 12.9 bits;  conditional E-value: 5e-06
         TIG  46 a.......svssttlvcttPpgpsg.llnvsvlvdg.aqlrs 78 
                 +       +  s+tl+cttP++ ++ +  vsv v   aq++ 
  KOO22076.1 383 StvteyldFTRSSTLTCTTPAVETNsTGAVSVRVSLnAQQFV 424
                 03444777999************7669999999888656555 PP

  == domain 3  score: 28.2 bits;  conditional E-value: 8e-11
         TIG   1 PvissisPnsgsasgGttititGtnFgtnssdssvtiggtpctvtasvssttlvcttPpgp 61 
                 P++ sisP sg + gGt+++++G++F ++ s++++ +g++ + +t   s   + c++P+g 
  KOO22076.1 437 PSVASISPRSGASVGGTLVNVSGSGF-ADGSQYTCAFGSSVVGATFVPSLGVISCYAPAGL 496
                 8999**********************.******************67777999*****986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (499 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       336  (0.0187406); expected 358.6 (0.02)
Passed bias filter:                      280  (0.0156172); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.26s 00:00:00.74 Elapsed: 00:00:00.41
# Mc/sec: 3631.05
//
Query:       KOO22077.1  [L=2457]
Description: hypothetical protein Ctob_002698 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.4e-75  249.4  47.6    1.2e-07   31.7   0.1   17.8 16  TIG         IPT/TIG domain
    9.4e-11   41.6   0.3       0.18   11.8   0.0    9.5 12  TIG_plexin  TIG domain
  ------ inclusion threshold ------
        4.5    8.1   6.5         55    4.6   0.2    5.0  5  Big_7       Bacterial Ig domain


Domain annotation for each model (and alignments):
>> TIG  IPT/TIG domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.3   0.1     7e-08   0.00042       1      39 [.     136     182 ..     136     188 .. 0.83
   2 !   11.1   0.0   5.3e-05      0.32       1      24 [.     190     213 ..     190     233 .. 0.95
   3 !    9.9   0.0   0.00012      0.73       1      28 [.     572     599 ..     572     618 .. 0.84
   4 ?   -1.5   0.0      0.45   2.7e+03      50      79 ..     672     712 ..     669     716 .. 0.66
   5 !   17.0   0.0   7.5e-07    0.0045       2      84 ..     723     813 ..     722     814 .. 0.91
   6 !   26.5   0.0   8.3e-10     5e-06       3      79 ..     820     904 ..     818     910 .. 0.93
   7 !   14.7   0.0   4.1e-06     0.025       1      27 [.     913     941 ..     913     958 .. 0.84
   8 !    8.1   0.1   0.00046       2.8       6      27 ..    1137    1185 ..    1134    1246 .. 0.67
   9 !   22.9   0.2   1.1e-08   6.7e-05       1      84 [.    1483    1577 ..    1483    1578 .. 0.94
  10 !    6.2   0.1    0.0018        11      11      85 .]    1619    1759 ..    1612    1759 .. 0.61
  11 !    4.6   0.1    0.0057        34       5      21 ..    1767    1783 ..    1762    1789 .. 0.88
  12 !   31.7   0.1     2e-11   1.2e-07       2      85 .]    2016    2096 ..    2015    2096 .. 0.97
  13 !   22.9   0.4   1.2e-08   6.9e-05       4      77 ..    2123    2195 ..    2121    2204 .. 0.80
  14 !   30.0   1.1     7e-11   4.2e-07       1      80 [.    2209    2288 ..    2209    2293 .. 0.88
  15 !   25.6   0.1   1.6e-09   9.5e-06       3      83 ..    2299    2397 ..    2298    2401 .. 0.77
  16 !   15.7   0.1     2e-06     0.012       2      41 ..    2406    2445 ..    2405    2454 .. 0.88

  Alignments for each domain:
  == domain 1  score: 20.3 bits;  conditional E-value: 7e-08
         TIG   1 PvissisPnsgsasgGttititGtnF........gtnssdssvtigg 39 
                 P++ s++P++g+ +gGt++ti+G ++        +  ss +++ +g+
  KOO22077.1 136 PTVLSVEPPCGPLDGGTSVTIRGLGLqrpaesvsNGRSSGYKCGWGE 182
                 99************************887777776666666666665 PP

  == domain 2  score: 11.1 bits;  conditional E-value: 5.3e-05
         TIG   1 PvissisPnsgsasgGttititGt 24 
                 P is+isP+ g ++gGt++t++G+
  KOO22077.1 190 PMISAISPSGGAIEGGTRVTLSGS 213
                 88********************96 PP

  == domain 3  score: 9.9 bits;  conditional E-value: 0.00012
         TIG   1 PvissisPnsgsasgGttititGtnFgt 28 
                 P +ss++P+ g+ +g t +t++G+++  
  KOO22077.1 572 PHVSSVHPTLGPRAGRTMLTVRGSGLYG 599
                 89***********************933 PP

  == domain 4  score: -1.5 bits;  conditional E-value: 0.45
         TIG  50 sttlvcttPpgp..........sg.llnvsvlvdgaqlrsd 79 
                 s tl+c+tP++           ++  l++ v  +g+q +sd
  KOO22077.1 672 SRTLRCVTPAIWpaenaaqtdaPSiRLRLEVSANGQQYTSD 712
                 67999****99966666666654445555666666555555 PP

  == domain 5  score: 17.0 bits;  conditional E-value: 7.5e-07
         TIG   2 vissisPnsgsasgGttititGtnFgtnssdssvtiggtpctvta..svssttlvcttPpgp........sgllnvsvlvdgaqlrsdnttft 84 
                 v+s ++P+ g+a+gGt i i+G ++ +n s++ ++ g + +           +l ct+P+++        +g + v v ++g q++s++  f+
  KOO22077.1 723 VLSQFTPSGGPAAGGTAIRINGFGL-ANGSEYVCRAGAARVLMGGrmDYGTGQLHCTMPSHAacelagteIGMSAVAVSTNG-QQFSADFFFE 813
                 6789*********************.***************99999999999999999999999999888999999999999.8888877766 PP

  == domain 6  score: 26.5 bits;  conditional E-value: 8.3e-10
         TIG   3 issisPnsgsasgGttititGtnF.......gtnssdssvtiggtpctvtasvssttlvcttPpgpsgllnvsvlvdg.aqlrsd 79 
                 +s i+P+ g+  gG ++ ++G n+       g+  + +s+++g+t +++t    s ++ ct+P++p+g l + ++ +g +++rs+
  KOO22077.1 820 VSRITPAAGPQLGGILVQVQGANLraghaisGSALPALSCRFGETSVPATFENASASVLCTSPARPPGALAFELTSNGqDYTRSS 904
                 799***********************************************8888999******************9998888886 PP

  == domain 7  score: 14.7 bits;  conditional E-value: 4.1e-06
         TIG   1 PvissisPnsgsasgGttititGtnF..g 27 
                 P++s+++P+ g+  gGt++ti Gt++  +
  KOO22077.1 913 PSLSALQPPAGPQRGGTRLTIAGTHLrvS 941
                 899***********************441 PP

  == domain 8  score: 8.1 bits;  conditional E-value: 0.00046
         TIG    6 isPnsgsasgGttititGtnF...........................g 27  
                   sP +g+++gGt+++itG  F                           +
  KOO22077.1 1137 MSPRTGPVAGGTRLVITGGPFarylsssspsggssggssmpigaeaslE 1185
                  68****************8887777777766555555555555555552 PP

  == domain 9  score: 22.9 bits;  conditional E-value: 1.1e-08
         TIG    1 PvissisPnsgsasgGttititGtnFgtnssdssvtiggtpctvta...........svssttlvcttPpgp.sgllnvsvlvdgaqlrsdnttft 84  
                  Pv s ++P+sg  +g tt+ + G n+ +  +d++++++                   ++s t+++c+tP    +g++ ++++ +g+q ++++++ft
  KOO22077.1 1483 PVTSHVYPSSGARYGATTVHVYGANL-AGGDDYRCRFDAPMLRSRPlimpaievpstTSSGTSVRCVTPELLsTGWVLLTLTLNGQQYSHTAVNFT 1577
                  89999*********************.***********998888889999******9***************666*******************98 PP

  == domain 10  score: 6.2 bits;  conditional E-value: 0.0018
         TIG   11 gsasgGttititGtnFgtnssdssvtiggtpctvtasvssttl...................................................... 53  
                  g+++g tti + G +F +  ++ ++++ +   +v  +v+ t                                                        
  KOO22077.1 1619 GPTDGQTTIQVFGAGF-DGGTEFRCRFLSHSGEVLGTVNATLEspsavvaayhrhvlasnqtvgrpvqpnaaegslvttsptggvvesggwldagqa 1714
                  6666777777777777.44444444444444444432222222333333444444444444445555555555555666666666666666666666 PP

         TIG   54 ...vcttPpgp.........sgllnvsvlvdg.aqlrsdnttftY 85  
                     +cttP++          ++  +v + v+g ++ +s + +f+Y
  KOO22077.1 1715 hllTCTTPAHNqsdfdnadpTAATRVAISVNGqQYYSSESMRFRY 1759
                  666***************987799999999998888888888888 PP

  == domain 11  score: 4.6 bits;  conditional E-value: 0.0057
         TIG    5 sisPnsgsasgGttiti 21  
                    sP++g+++gGt++ti
  KOO22077.1 1767 VSSPQTGPTDGGTLLTI 1783
                  468*************9 PP

  == domain 12  score: 31.7 bits;  conditional E-value: 2e-11
         TIG    2 vissisPnsgsasgGttititGtnFgtnssdssvtiggtpctvtasvssttlvcttPpgpsgllnvsvlvdgaqlrsdnttftY 85  
                   is+++P+sg+++g++ it+ G n+ +  +++++++g++ + +     + +++c++Pp  +g++  +v  +  q++  ++++tY
  KOO22077.1 2016 HISTVFPTSGPVAGNSEITLMGANL-AGGDNYTCRFGTEVSLAA-LRPDGSVTCYSPPNCAGSMLAQVALNA-QQYAPGVQYTY 2096
                  59***********************.******************.**************************9.99999999998 PP

  == domain 13  score: 22.9 bits;  conditional E-value: 1.2e-08
         TIG    4 ssisPnsgsasgGttititGtnFgtnssdssvtiggtpc..tvtasvssttlvcttPpgpsgllnvsvlvdgaqlr 77  
                  +s+sPnsg+  g t+i+++G+ F +  s++ ++++ +++  +++ ++s+++l+c tP+   g ++v v  +  q++
  KOO22077.1 2123 YSLSPNSGPQLGQTRIVVSGQAF-SFGSEYVCQVNRSATfqPAS-YISDSELACFTPSSNLGAVSVRVSLNA-QQF 2195
                  699********************.88999999998877621444.***************777777777666.444 PP

  == domain 14  score: 30.0 bits;  conditional E-value: 7e-11
         TIG    1 PvissisPnsgsasgGttititGtnFgtnssdssvtiggtpctvtasvssttlvcttPpgpsg.llnvsvlvdgaqlrsdn 80  
                  P++ sisP sg + gGt+++++G++F ++ s++++ +g++ + +t   s   + c++P+g  g  + ++v  + +q +s  
  KOO22077.1 2209 PSVASISPRSGASVGGTLVNVSGSGF-ADGSQYTCAFGSSVVGATFVPSLGVISCYAPAGLYGsAVALKVSLNAQQYSSEV 2288
                  8999**********************.******************77788999********88789999888885555554 PP

  == domain 15  score: 25.6 bits;  conditional E-value: 1.6e-09
         TIG    3 issisPnsgsasgGttititGtnFgtnssdssvtiggtpctvta......svssttl............vcttPpgpsgllnvsvlvdg.aqlrsdn 80  
                  + ++sP+sg+++gGt+++++G  +    sd+++++g   ++  a       v+ t +            +c++P+g+++++ + v  ++ +++r++ 
  KOO22077.1 2299 VGTYSPSSGPSAGGTRVVVRGAEL-YGGSDYRCRFGACGACEAAwscgacVVNATYVaesalglgddaiECVSPSGSAAGVALEVSLNSqQYTRTNL 2394
                  5679********************.99999999999888888877888884444444444446666666********************86666655 PP

         TIG   81 ttf 83  
                   t+
  KOO22077.1 2395 STL 2397
                  543 PP

  == domain 16  score: 15.7 bits;  conditional E-value: 2e-06
         TIG    2 vissisPnsgsasgGttititGtnFgtnssdssvtiggtp 41  
                  v+ss+sP+ g+ +g t++ti G+++++ ++++++++  ++
  KOO22077.1 2406 VVSSVSPSLGPRDGATLVTILGSGLNSVATNLKCRFAVSA 2445
                  79********************************997655 PP

>> TIG_plexin  TIG domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.0   0.0       2.6   1.5e+04      20      34 ..     441     455 ..     438     461 .. 0.77
   2 ?   -2.8   0.0       1.1   6.4e+03      45      56 ..     524     535 ..     511     561 .. 0.83
   3 ?    0.7   0.0     0.087   5.2e+02      42      84 ..     671     712 ..     660     716 .. 0.67
   4 ?    2.7   0.0     0.021   1.2e+02      26      52 ..     856     883 ..     836     888 .. 0.81
   5 !    5.7   0.0    0.0025        15       2      53 ..    1490    1552 ..    1489    1573 .. 0.74
   6 ?   -3.4   0.0       1.6   9.8e+03      46      56 ..    1717    1727 ..    1714    1746 .. 0.78
   7 ?   -3.9   0.0       2.4   1.4e+04      20      52 ..    1790    1824 ..    1779    1828 .. 0.65
   8 !   11.8   0.0   3.1e-05      0.18       2      52 ..    2022    2071 ..    2021    2080 .. 0.85
   9 ?    1.8   0.0     0.039   2.4e+02      23      55 ..    2147    2181 ..    2127    2203 .. 0.79
  10 ?    2.3   0.0     0.029   1.7e+02      24      52 ..    2237    2266 ..    2215    2271 .. 0.80
  11 ?    0.2   0.0      0.13   7.8e+02      28      55 ..    2346    2375 ..    2319    2402 .. 0.58
  12 ?   -1.1   0.0      0.33     2e+03       2      33 ..    2412    2443 ..    2411    2455 .. 0.80

  Alignments for each domain:
  == domain 1  score: -4.0 bits;  conditional E-value: 2.6
  TIG_plexin  20 lpalseklkCvFgdl 34 
                  p++  ++ C+F+d+
  KOO22077.1 441 APQMPPEYVCRFEDT 455
                 57788899****997 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 1.1
  TIG_plexin  45 kvtCdtPkpeel 56 
                 +++C+tP+++ +
  KOO22077.1 524 TLRCSTPPMRAV 535
                 799****99766 PP

  == domain 3  score: 0.7 bits;  conditional E-value: 0.087
  TIG_plexin  42 sdnkvtCdtPkpeelppipegk.dhvtvkLsirsketgkdlast 84 
                  +++++C tP++   p+  + + d+ +++L + ++ +g++ +s 
  KOO22077.1 671 PSRTLRCVTPAI--WPAENAAQtDAPSIRLRLEVSANGQQYTSD 712
                 4799*******9..444333333777777777777777776665 PP

  == domain 4  score: 2.7 bits;  conditional E-value: 0.021
  TIG_plexin  26 klkCvFgdleeseatvs..dnkvtCdtPk 52 
                  l+C+Fg++ + +at++  + +v C++P+
  KOO22077.1 856 ALSCRFGET-SVPATFEnaSASVLCTSPA 883
                 579*****9.56666655799******96 PP

  == domain 5  score: 5.7 bits;  conditional E-value: 0.0025
  TIG_plexin    2 PsnisvsttseltltvenlpalseklkCvF............gdleeseatvsdnkvtCdtPkp 53  
                  Ps+  +  ++++++  +nl   +++++C+F              +e+   t+s+++v+C tP+ 
  KOO22077.1 1490 PSSGARYGATTVHVYGANLA-GGDDYRCRFdapmlrsrplimPAIEVPSTTSSGTSVRCVTPEL 1552
                  77777888889999999985.5779*****44444333333224444666777*********86 PP

  == domain 6  score: -3.4 bits;  conditional E-value: 1.6
  TIG_plexin   46 vtCdtPkpeel 56  
                  +tC+tP++++ 
  KOO22077.1 1717 LTCTTPAHNQS 1727
                  79****99885 PP

  == domain 7  score: -3.9 bits;  conditional E-value: 2.4
  TIG_plexin   20 lpalseklkCvFgdlee..seatvsdnkvtCdtPk 52  
                  lp+ ++ + C+ + + +  + a   ++ ++C+tP+
  KOO22077.1 1790 LPRAGGPVLCRLDGVAVdgTIAGAANELIRCTTPA 1824
                  666666677777666542222334488899**997 PP

  == domain 8  score: 11.8 bits;  conditional E-value: 3.1e-05
  TIG_plexin    2 PsnisvsttseltltvenlpalseklkCvFgdleeseatvsdnkvtCdtPk 52  
                  P++ +v   se+tl  +nl   +++++C+Fg+  + +a   d++vtC++P+
  KOO22077.1 2022 PTSGPVAGNSEITLMGANLA-GGDNYTCRFGTEVSLAALRPDGSVTCYSPP 2071
                  88889999999999999985.5779******9966666677*********8 PP

  == domain 9  score: 1.8 bits;  conditional E-value: 0.039
  TIG_plexin   23 lseklkCvFgdlee.se.atvsdnkvtCdtPkpee 55  
                  +++++ C  + + + ++ + +sd+++ C tP++++
  KOO22077.1 2147 FGSEYVCQVNRSATfQPaSYISDSELACFTPSSNL 2181
                  5778999997555534415588*********9875 PP

  == domain 10  score: 2.3 bits;  conditional E-value: 0.029
  TIG_plexin   24 seklkCvFgdleeseatvs.dnkvtCdtPk 52  
                  +++++C Fg++ + +  v   + ++C+ P+
  KOO22077.1 2237 GSQYTCAFGSSVVGATFVPsLGVISCYAPA 2266
                  579*******97766665559999999995 PP

  == domain 11  score: 0.2 bits;  conditional E-value: 0.13
  TIG_plexin   28 kCvFgdleeseatvs..dnkvtCdtPkpee 55  
                  +Cv + + ++e+ +   d+ + C +P+ + 
  KOO22077.1 2346 ACVVNATYVAESALGlgDDAIECVSPSGSA 2375
                  455555555665544559999999998644 PP

  == domain 12  score: -1.1 bits;  conditional E-value: 0.33
  TIG_plexin    2 PsnisvsttseltltvenlpalseklkCvFgd 33  
                  Ps  ++  ++ +t+  + l +++ +lkC+F  
  KOO22077.1 2412 PSLGPRDGATLVTILGSGLNSVATNLKCRFAV 2443
                  6667788899999999**************64 PP

>> Big_7  Bacterial Ig domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.1      0.78   4.6e+03       1      24 [.     190     213 ..     190     216 .. 0.82
   2 ?   -3.6   0.0         3   1.8e+04      33      46 ..     699     711 ..     684     717 .. 0.56
   3 ?   -3.2   0.0       2.5   1.5e+04       1      21 [.    1483    1503 ..    1483    1505 .. 0.83
   4 ?    2.7   0.0     0.038   2.3e+02      27      54 ..    1733    1759 ..    1729    1773 .. 0.86
   5 ?    4.6   0.2    0.0092        55       1      26 [.    2209    2234 ..    2209    2239 .. 0.89

  Alignments for each domain:
  == domain 1  score: -1.5 bits;  conditional E-value: 0.78
                 XEEEEEE--TT--EB.TSEEEEEEE CS
       Big_7   1 PtvtitsPangatvs.ggtvtisas 24 
                 P+++ +sP+ ga ++ g+ vt+s+s
  KOO22077.1 190 PMISAISPSGGA-IEgGTRVTLSGS 213
                 89999***7666.665999999986 PP

  == domain 2  score: -3.6 bits;  conditional E-value: 3
                 EEEEEETTEE.EEE CS
       Big_7  33 kVefyvdgtlglgt 46 
                 + e++++g++ +++
  KOO22077.1 699 RLEVSANGQQ-YTS 711
                 4456666666.544 PP

  == domain 3  score: -3.2 bits;  conditional E-value: 2.5
                  XEEEEEE--TT--EBTSEEEE CS
       Big_7    1 PtvtitsPangatvsggtvti 21  
                  P+++ ++P++ga + ++tv +
  KOO22077.1 1483 PVTSHVYPSSGARYGATTVHV 1503
                  899999******998777765 PP

  == domain 4  score: 2.7 bits;  conditional E-value: 0.038
                  -SS-EEEEEEEETTEE.EEEE-SSSEEE CS
       Big_7   27 ddggvskVefyvdgtlglgtdtsapysl 54  
                  d+++ ++V ++v+g++ ++++ s  +++
  KOO22077.1 1733 DPTAATRVAISVNGQQ-YYSSESMRFRY 1759
                  668889**********.99999877776 PP

  == domain 5  score: 4.6 bits;  conditional E-value: 0.0092
                  XEEEEEE--TT--EBTSEEEEEEEEE CS
       Big_7    1 PtvtitsPangatvsggtvtisasAs 26  
                  P+v+ +sP +ga+v g+ v++s+s  
  KOO22077.1 2209 PSVASISPRSGASVGGTLVNVSGSGF 2234
                  9**************9999**99865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (2457 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       305  (0.0170115); expected 358.6 (0.02)
Passed bias filter:                      206  (0.0114898); expected 358.6 (0.02)
Passed Vit filter:                        11  (0.000613531); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.98u 0.28s 00:00:01.26 Elapsed: 00:00:00.48
# Mc/sec: 15408.45
//
Query:       KOO22078.1  [L=198]
Description: hypothetical protein Ctob_002691 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.4e-12   47.4   0.0      5e-07   29.2   0.0    2.1  2  Exostosin  Exostosin family


Domain annotation for each model (and alignments):
>> Exostosin  Exostosin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.4   0.0   1.1e-07     0.002       5      75 ..      54     144 ..      50     146 .. 0.83
   2 !   29.2   0.0   2.8e-11     5e-07     254     297 ..     144     188 ..     142     191 .. 0.89

  Alignments for each domain:
  == domain 1  score: 17.4 bits;  conditional E-value: 1.1e-07
   Exostosin   5 lkVYvydlpskfnedlleecrelp........................etswysaeqfllesllhsrveeyvrtsdpaeAdlffvpfyaslsenr 75 
                  k Y+yd p+ +  + l+ c +                           ++  s+  +l++sl+  r    +rt+dp++A l +vp+++slse +
  KOO22078.1  54 PKFYMYDGPEFLWGERLAACYHRKyghapwamakffknntgyteagpaPQEDLSHALWLHTSLVRHR----HRTKDPSAAMLYVVPAFGSLSEAT 144
                 56788888888877766666555568888999999999999999998888888999***********....*********8888999****9876 PP

  == domain 2  score: 29.2 bits;  conditional E-value: 2.8e-11
   Exostosin 254 allagCIPViisdqielPfedvldwrefsvfvpekdvpe.lksil 297
                 +++agC+P ii+d i+lP + ++ ++ f v+vpe +  + ++  +
  KOO22078.1 144 TVAAGCVPMIIGDTIRLPLAPLIAYKNFTVRVPESEFLRdPHAAV 188
                 689*******************************99887666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (198 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       258  (0.0143901); expected 358.6 (0.02)
Passed bias filter:                      234  (0.0130515); expected 358.6 (0.02)
Passed Vit filter:                        12  (0.000669307); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.28s 00:00:00.65 Elapsed: 00:00:00.40
# Mc/sec: 1481.65
//
Query:       KOO22079.1  [L=1204]
Description: filamin repeat domain containing protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.7e-23   82.0   0.0    6.9e-06   26.8   0.0    6.5  6  Filamin     Filamin/ABP280 repeat
     0.0053   17.0   0.0      0.028   14.7   0.0    2.3  2  SH3_3       Bacterial SH3 domain
     0.0079   16.5   4.9       0.14   12.5   0.3    4.3  4  Invasin_D3  Invasin, domain 3


Domain annotation for each model (and alignments):
>> Filamin  Filamin/ABP280 repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.9   0.0     0.065   3.9e+02       6      39 ..       2      34 ..       1     162 [. 0.81
   2 !    6.2   0.0    0.0032        19      74     102 ..     515     545 ..     350     546 .. 0.92
   3 !   26.8   0.0   1.2e-09   6.9e-06      26     101 ..     581     677 ..     567     679 .. 0.80
   4 !   10.2   0.0   0.00017         1       3     103 .]     688     800 ..     686     800 .. 0.71
   5 !   15.6   0.0   3.7e-06     0.022      72     102 ..     893     923 ..     814     924 .. 0.86
   6 !   12.4   0.0   3.5e-05      0.21       3      95 ..     933    1029 ..     931    1033 .. 0.74

  Alignments for each domain:
  == domain 1  score: 1.9 bits;  conditional E-value: 0.065
                SEEEESGGGTEEETTS-EEEEEEESSSTSCCCST CS
     Filamin  6 kskvnGpGieasvagesltFtvytkdakgeksev 39
                k +v G+ ++++v  ++  F v  kd+ g+ + +
  KOO22079.1  2 KTVVRGEHLHHAVSRQQHNFDVLFKDKLGK-VAH 34
                67899******9999************998.433 PP

  == domain 2  score: 6.2 bits;  conditional E-value: 0.0032
                 EEEEE--SSSCEEEEEEEETTC..E-TTSSE CS
     Filamin  74 ytvsYtpeepgtyrvsvkldgk..higgsPf 102
                 +++ Y + ++g+y ++v++++   + +gsPf
  KOO22079.1 515 HKAAYSVGRAGQYLLHVRMRQAacSLPGSPF 545
                 5678***************9954599****9 PP

  == domain 3  score: 26.8 bits;  conditional E-value: 1.2e-09
                 EEEESSSTSCCCSTTS..EEEEE....ESSTS........................EEEEEEEE-SSSEEEEEE--SSSCEEEEEEEETTCE-TTSS CS
     Filamin  26 tvytkdakgeksevggdelqvriv..tgsphgaatks...................svkievvdnedgtytvsYtpeepgtyrvsvkldgkhiggsP 101
                 + +t d+ g+++  gg ++++ iv   g+p+g+ ++s                    +++ vvd++dgtyt ++t + +gt+r +v +dg+++ gsP
  KOO22079.1 581 ELKTSDKMGNPCILGGAKVEILIVekAGDPNGRTKPSkpakggsdlavgstearekAINTVVVDRGDGTYTLRWTSKFSGTFRTRVVIDGEDVVGSP 677
                 5678899999999999999999988877777776663444455555566566665566677************************************ PP

  == domain 4  score: 10.2 bits;  conditional E-value: 0.00017
                 STTSEEEESGGGTEEETTS-EEEEEEESSS.TSCCCSTTS..EEEEE..ESSTS............EEEEEEEE-SSSEEEEEE--SSSCEEEEEEEE. CS
     Filamin   3 dpskskvnGpGieasvagesltFtvytkda.kgeksevggdelqvrivtgsphgaatks.......svkievvdnedgtytvsYtpeepgtyrvsvkl. 92 
                 d  k +++ +G++++ ag++ t+++   d+  +  s+   +++q  i     hg +  +       +++   +    g ++ +Y p+++g+  ++v + 
  KOO22079.1 688 DLTKTVLTSEGLKSAMAGRPSTVQIAFVDQfLNTASP--NSKFQFGIALVPRHGGERDKvakvpehKFQGSWTGGATGIFELQYVPTQAGQADLHVWCi 784
                 778899999****************999771444445..5677755553555554333223334445555677777********************998 PP

                 ...TT..CE-TTSSEE CS
     Filamin  93 ...dg..khiggsPfd 103
                    +g     +gsPf+
  KOO22079.1 785 pegKGerLALPGSPFH 800
                 7654444588999996 PP

  == domain 5  score: 15.6 bits;  conditional E-value: 3.7e-06
                 SEEEEEE--SSSCEEEEEEEETTCE-TTSSE CS
     Filamin  72 gtytvsYtpeepgtyrvsvkldgkhiggsPf 102
                  ty+++  ++ +g++ v++ l gk+i+gsP 
  KOO22079.1 893 TTYDIRHDLTNAGEHAVHILLHGKPIRGSPV 923
                 49****************************7 PP

  == domain 6  score: 12.4 bits;  conditional E-value: 3.5e-05
                  STTSEEEESGGGTEEETTS-EEEEEEESSSTSCCCSTTS..EEEEE..ESSTS.........EEEEEEEE-SSSEEEEEE--SSSCEEEEEEEETTC CS
     Filamin    3 dpskskvnGpGieasvagesltFtvytkdakgeksevggdelqvrivtgsphgaatks....svkievvdnedgtytvsYtpeepgtyrvsvkldgk 95  
                  dp  +k++ p   +   ++s+ Ft +t d  g++++ gg  +  r+   +++ + + s    + k   +dn+dgty++   ++ p+t+r+ v +d++
  KOO22079.1  933 DPGFCKILSPDDTTFWTNRSYCFTLKTYDRFGNECKLGGLAISNRLALVKQNARDQTSlvpsNHKLSWDDNQDGTYEILVILNIPCTVRLIVNVDKN 1029
                  666667766664444677999***************99977776665333333322223444555669************************99986 PP

>> SH3_3  Bacterial SH3 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   0.0   4.7e-06     0.028       5      33 ..     204     232 ..     200     234 .. 0.91
   2 ?   -2.7   0.0       1.3   7.7e+03      34      53 ..     934     953 ..     923     953 .. 0.76

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 4.7e-06
       SH3_3   5 vRsgPstssevigtlpyGekVevleetgg 33 
                 vR+++ ++se +g+l +G++V+++ee+ +
  KOO22079.1 204 VRAEAHKGSEEVGRLLPGQVVTIIEEQID 232
                 9*************************866 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 1.3
       SH3_3  34 geWykvrtddgteGwvssgy 53 
                  +++k+ ++d+t+ w + +y
  KOO22079.1 934 PGFCKILSPDDTTFWTNRSY 953
                 349********998877666 PP

>> Invasin_D3  Invasin, domain 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.5   0.3   2.3e-05      0.14      35      90 ..     619     678 ..     579     682 .. 0.78
   2 ?   -1.1   0.0       0.4   2.4e+03      32      46 ..     914     928 ..     913     934 .. 0.87
   3 ?    2.0   0.0     0.045   2.7e+02      25      64 ..     956    1010 ..     949    1027 .. 0.64
   4 ?   -3.1   0.6       1.7     1e+04      49      64 ..    1076    1093 ..    1049    1101 .. 0.44

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 2.3e-05
  Invasin_D3  35 pvsg.ltvtfsttsag...tlsavtdngdGtytatLtattagtatitptvnGvaiaatat 90 
                 p++g    ++ +t+a      + v d gdGtyt   t++ +gt    + ++G++   ++t
  KOO22079.1 619 PAKGgSDLAVGSTEARekaINTVVVDRGDGTYTLRWTSKFSGTFRTRVVIDGEDVVGSPT 678
                 4445244666666222442444567***************************77666665 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 0.4
  Invasin_D3  32 ngnpvsgltvtfstt 46 
                 +g+p++g  vtfs +
  KOO22079.1 914 HGKPIRGSPVTFSVQ 928
                 79**********976 PP

  == domain 3  score: 2.0 bits;  conditional E-value: 0.045
  Invasin_D3   25 tvtlkDangnp..vsgltvtfstt....sag..tls........avtdngdGtyta 64  
                  t++  D +gn   ++gl+++        +    ++s        +++dn+dGty+ 
  KOO22079.1  956 TLKTYDRFGNEckLGGLAISNRLAlvkqN-ArdQTSlvpsnhklSWDDNQDGTYEI 1010
                  77778888888777776655443322221.12322222223333477*******85 PP

  == domain 4  score: -3.1 bits;  conditional E-value: 1.7
  Invasin_D3   49 g.tlsavt.dngdGtyta 64  
                  + ++savt +++ G   +
  KOO22079.1 1076 TlSTSAVTgESATGSIGS 1093
                  123333432222343333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1204 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1332  (0.074293); expected 358.6 (0.02)
Passed bias filter:                      663  (0.0369792); expected 358.6 (0.02)
Passed Vit filter:                        87  (0.00485247); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 1.01u 0.30s 00:00:01.31 Elapsed: 00:00:00.49
# Mc/sec: 7340.98
//
Query:       KOO22080.1  [L=128]
Description: hypothetical protein Ctob_002693 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (128 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       195  (0.0108762); expected 358.6 (0.02)
Passed bias filter:                      137  (0.00764125); expected 358.6 (0.02)
Passed Vit filter:                         1  (5.57756e-05); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.24s 00:00:00.59 Elapsed: 00:00:00.39
# Mc/sec: 991.32
//
Query:       KOO22081.1  [L=354]
Description: hypothetical protein Ctob_002692 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.6e-16   60.0   5.8    2.8e-15   55.9   4.8    2.2  2  PKD_channel  Polycystin cation channel
    3.2e-08   33.1   9.1    3.2e-08   33.1   9.1    1.4  2  Ion_trans    Ion transport protein
  ------ inclusion threshold ------
      0.028   13.3   0.0      0.037   12.9   0.0    1.1  1  DUF917       Protein of unknown function (DUF917)


Domain annotation for each model (and alignments):
>> PKD_channel  Polycystin cation channel
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    2.7   0.0     0.007        42       4      35 ..      55      86 ..      53     101 .. 0.79
   2 !   55.9   4.8   4.7e-19   2.8e-15     215     388 ..     169     344 ..     154     349 .. 0.89

  Alignments for each domain:
  == domain 1  score: 2.7 bits;  conditional E-value: 0.007
                 STT--SHHHHHHHHTTHHHHTTTTS-B-SS-S CS
  PKD_channel  4 latvtdlediykwlesvLlpaltsnktlsaee 35
                 + t+ +  di++w + vL p+l  n  ++ ++
   KOO22081.1 55 FFTIRRPADIWQWGNAVLWPGLLGNLGPENSQ 86
                 66788899**************7776654444 PP

  == domain 2  score: 55.9 bits;  conditional E-value: 4.7e-19
                  HHHHHHHHHHHHHHHH-------.-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-SSS----HHHHHHHHHHHHHHHHHHHHHHHG CS
  PKD_channel 215 evvfvvfvlyfvveeilkirker.asylrsvwnlldlaivvlsvvlivlailrevlakkllkkveaekeefldFrevaqldqllriilavlvflttlk 311
                  +++ + f++yf   ei++i   +  sy++++wnl+d  ++ l +++ + +      + + +   + +   fld +   + +  l+ +la+ v++ +lk
   KOO22081.1 169 VLIGLAFCIYFGAMEIFEIISIGiSSYISDMWNLMDWTVYSLYAFVFLRSKTYVEHVRNPVCGGICTTIGFLDDHVQVEDARSLKFSLALCVCVQLLK 266
                  456678999*******************************999988776666666677777766788999999999999999**************** PP

                  GGGG--.----------------------HHHHHHHHHHHHHHHHHHSSSS-STTSSHHHHHHHHHHHHTT---HHHH CS
  PKD_channel 312 llkvlr.fnktlslltktlaralkdvlgfalvivilflayaqlgvllfGtqasnfsnlvksiltlfrlilgdfqytel 388
                  ++k++  +++++ l  ++l++al+d++ f++v+++ ++a+  ++ +  Gt +++fs+  +s++tl r + gdf+ te+
   KOO22081.1 267 IMKISAiLVPKMGLTPSVLKKALPDMIFFSFVFAVSLFAFSNMLFIQLGTGMKEFSTQFTSLITLGRALFGDFDMTEV 344
                  ****974689***************************************************************99986 PP

>> Ion_trans  Ion transport protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.0      0.72   4.3e+03     130     146 ..      11      27 ..       5      70 .. 0.63
   2 !   33.1   9.1   5.4e-12   3.2e-08      33     201 ..     166     347 ..     144     351 .. 0.79

  Alignments for each domain:
  == domain 1  score: -3.3 bits;  conditional E-value: 0.72
                 HHHHHHHHHHHHHHHHH CS
   Ion_trans 130 llnvlllllvvlfifal 146
                 ll+ ++++   l+i+ l
  KOO22081.1  11 LLYAAFVFTTQLVIYTL 27 
                 44444444444444433 PP

  == domain 2  score: 33.1 bits;  conditional E-value: 5.4e-12
                 HHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHCHSHHHHHHHHHHHHHHHHH........HHHH.........................HHHHHHHHH CS
   Ion_trans  33 tileilelvftaiftlemllkilalgllikkrYlrdpwnilDflvvlpsllsl........vlse.........................esllllsvl 98 
                 ++l  + l+f + f    +++i++ g+    +Y++d+wn++D++v +++ +++                                     +  ++l++ 
  KOO22081.1 166 EFLVLIGLAFCIYFGAMEIFEIISIGI---SSYISDMWNLMDWTVYSLYAFVFlrsktyveH--VrnpvcggicttigflddhvqvedarSLKFSLALC 259
                 6666666677777777779********...*********************99766665550..15555666666677777788888887677777777 PP

                 HHHGGGGGGHHHCHS.HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH.HHHHTTSCCCCCCSCCSTSSSTTTSSSSSSHHHHHHHHHHHHTTS.S CS
   Ion_trans  99 rlfrvlrllklisrl.eglrtlvtalirsvkdllnvlllllvvlfifalig.vqlfkgklreknecaktwenpnngntnFdnfftallwlfrlmtte.g 194
                  ++++l+++k+   l +++  +   l+++++d++ + ++++v lf+f+ +  +ql                    g  +F++ ft+l++l r ++++ +
  KOO22081.1 260 VCVQLLKIMKISAILvPKMGLTPSVLKKALPDMIFFSFVFAVSLFAFSNMLfIQLG------------------TGMKEFSTQFTSLITLGRALFGDfD 340
                 7778888888886651669999**************************88834555..................577899**********999999988 PP

                 HHHHHHH CS
   Ion_trans 195 wgdilya 201
                 +++++++
  KOO22081.1 341 MTEVISN 347
                 8887765 PP

>> DUF917  Protein of unknown function (DUF917)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   6.2e-06     0.037       8      66 ..     122     187 ..     118     238 .. 0.77

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 6.2e-06
                 HHHHHTTTT-SS-HHHHHHHHTT-SBTT.-.-EEEE-GGG--SEE..EEEE.....EEE-HHHHTT CS
      DUF917   8 tGaavLGtGGGGspysgylllrqaleeg.k.svrvvsldelpddalvvvvg.....amGsptviee 66 
                 +G + LGtGGGG+p + +  + ++ + + +  +r+++ ++l+d +++v +g     + G+ +++e 
  KOO22081.1 122 DGEGYLGTGGGGTPPTVAEVVDRMNQFDwTdGLRILQDSSLDDLEFLVLIGlafciYFGAMEIFEI 187
                 68889*******************99778558***********88876554111115677666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (354 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       446  (0.0248759); expected 358.6 (0.02)
Passed bias filter:                      250  (0.0139439); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.44u 0.26s 00:00:00.70 Elapsed: 00:00:00.40
# Mc/sec: 2669.31
//
Query:       KOO22082.1  [L=290]
Description: spfh domain band 7 family protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.13   11.4   1.2       0.25   10.5   1.2    1.4  1  NaeI      Restriction endonuclease NaeI


Domain annotation for each model (and alignments):
>> NaeI  Restriction endonuclease NaeI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   1.2   1.4e-05      0.25     162     224 ..     155     217 ..     147     242 .. 0.89

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 1.4e-05
        NaeI 162 hldketreailaaksgqarvaelfRrvqkrrvnrevvrtvaqqkDymkRvRenggartvLrpE 224
                 +l++  +eail+  s+++ +++  R  ++++v  ++ r vaqq+  m  + ++g a ++L++ 
  KOO22082.1 155 ELPAVFQEAILESISTKQNITHSERYKENMEVTFTTQRMVAQQEANMTVIAARGVANQKLQQA 217
                 5788899*****************************************************975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (290 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1142  (0.0636957); expected 358.6 (0.02)
Passed bias filter:                      501  (0.0279436); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.23s 00:00:00.69 Elapsed: 00:00:00.38
# Mc/sec: 2280.24
//
Query:       KOO22083.1  [L=931]
Description: myosin 1, partial [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   1.1e-146  489.8   0.0   7.5e-146  487.1   0.0    2.0  1  Myosin_head      Myosin head (motor domain)
    8.2e-05   22.9   0.1     0.0007   19.9   0.0    2.4  3  AAA_22           AAA domain
     0.0077   16.0   0.8     0.0077   16.0   0.8    2.5  3  AAA_30           AAA domain
  ------ inclusion threshold ------
      0.091   12.8   0.0       0.18   11.8   0.0    1.4  1  TsaE             Threonylcarbamoyl adenosine biosynthesis pro
       0.14   12.6   5.9       0.14   12.6   0.4    3.2  3  AAA_16           AAA ATPase domain
       0.14   11.9   0.0       0.27   10.9   0.0    1.4  1  Sigma54_activat  Sigma-54 interaction domain
        0.2   11.4   0.1        1.2    8.9   0.1    2.0  2  PRK              Phosphoribulokinase / Uridine kinase family


Domain annotation for each model (and alignments):
>> Myosin_head  Myosin head (motor domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  487.1   0.0  2.9e-149  7.5e-146       2     661 ..      61     764 ..      60     785 .. 0.88

  Alignments for each domain:
  == domain 1  score: 487.1 bits;  conditional E-value: 2.9e-149
                  SBGCGSSS-SHHHHHHHHHHHHHTT--EEEETTEEEEE--SS--S.TSSHHHHHHHTTS-GGGSSSSHHHHHHHHHHHHHHHTSEEEEEEESSTTSSH CS
  Myosin_head   2 edlveLsllneasvlenlkkRykkdliYtysglvlvavnPykklk.iysedvikaykgkkreelpPHifaiadeayrslledkenqsilisGEsGAGK 98 
                   d+++L +l+ea++l+nl++Ry++d iYty+g+vl+a+nPyk+++ +y+e +++ay+g+    lpPH+faia++a r+++ d+ +qsi++sGEsGAGK
   KOO22083.1  61 ADNAQLFYLDEANLLDNLRTRYASDAIYTYTGTVLLALNPYKRIDgLYEEAQMDAYRGRALGVLPPHVFAIAERARRAMALDHTDQSIVVSGESGAGK 158
                  6999********************************************************************************************** PP

                  HHHHHHHHHHHHHHSSSSSCTCTTHHHHHHHHHHHHHHHHHEEEESSETTEESSEEEEEEEEET.TSSEEEEEEEEECE-GGGGT---TT--SBHHHH CS
  Myosin_head  99 teatKkvlqylasvaeskekveeeeleekilqsnPilEafGnAktvrndnssRFGKfieiefda.kgkiagakietYLLEksRvvkqakeERnyHiFY 195
                  te+ + ++qyla  + +++    ++l + +l++nP+lEafG A t+rn nssRFGK ++i   + ++ ++g+++ tYLLEk+R+          H F 
   KOO22083.1 159 TESCRAIVQYLAHHSRHEA----GSLASALLAANPVLEAFGCAATTRNTNSSRFGKLMKIWTAKdSSALNGSSVVTYLLEKARAAASG------HAFR 246
                  ************8766555....89***********************************8766156799*************97654......7776 PP

                  HHHHCSTHHHHHHTT--TCCGSTTTTTTSSSSBTTS-HHHHHHHHHHHHHHHT--HHHHHHHHHHHHHHHHHCTSSEEEECTTSSE............ CS
  Myosin_head 196 qllagaseeekkelkledvkdyaylsqsgeltvdgiddseefketkkaldilglseeeqkeifrivaailhlGniefkkeakdeqa............ 281
                  +l      ++ ++ +  d+ + + ls ++e +++    ++++ +++ al  lg s+ e +e + ++ a++ lG++ f++e +d+ +            
   KOO22083.1 247 YLET----STADDATAGDAPTVRLLSPGSEHSAAW---ASQLGAVDAALRALGASNGEVREAWAVLGAVIALGEVLFEDEGEDKGSlgtnaaadneat 337
                  6644....445556678999999***977666554...678999**********************************99988877777777777777 PP

                  ....EESSHHH.HHHHHHHHTS-HHHHHHHHHSEEEEET.TEEEEEE-BHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSS........-S-SEE CS
  Myosin_head 282 ....vledeek.lekaaellgvdaeelekalvkrriktg.kevvskalnveqaevardalakaiyerlFdwlverinkslekkk........eekksf 365
                      + + ++  l+++a +lgv +e+l++ l++r++ +   + +  + +   a+  rd la+++y+rlF+w+v  +n+sl+ ++         + +  
   KOO22083.1 338 ghaaIRAGSAPaLAACAMCLGVGVETLQQRLLTRNVVSPrGSSYLIHRSAGAAASCRDGLAHELYDRLFTWVVGVVNRSLSGTEsggaaesaAAGARS 435
                  7665333333337788899**********99999876643889999999*******************************998867766555567789 PP

                  EEEEEEE-B---SSB-HHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHTTSSGCGS-GGGCCHHHHHHHHSSSTSHHHHHHHHHTSTTS........-H CS
  Myosin_head 366 iGvLDiaGFEifeknsFEqlcinyvnEkLqqlFnelvlklEqeeYvrEgiewkfidfgldnqaiidLiekkplGilslLdeecllpka........td 455
                  i +LDi+GFE +  ns Eql in++nE+Lq  F +++l +E   Y+ E +    i+   dn +++ L+e kp G++ lL++ec l +          d
   KOO22083.1 436 IAILDIFGFESLACNSLEQLLINHTNERLQLYFLHQTLHAELALYAAEAVPAPAITL-SDNAQCVALVEGKPGGLIWLLEDECDLQRRakpdaanpGD 532
                  *********************************************************.7************************985433334455589 PP

                  HHHHHHHHHHHTTSTTEEETTS........................TTTTTEEEEEETTCEEEEE-TTHHHHHH----HHHHHHHHTSSSHHHHHHCC CS
  Myosin_head 456 etfleklvkafskhakfeksrl........................kkgeakFiikHyAgkveYevegfleKnkDtlnedlvellksskkkllaelfk 529
                   +++++  ka+++h++++k++                            +a+F+i H+Ag+v+Y+ +gf++Kn D+l+ +l +ll +s+ +l+a+lf+
   KOO22083.1 533 ANLVARAFKAHESHPNLQKPTRplgkqqpaaaglgatggatprasgVAPSARFAIAHFAGTVDYDSAGFISKNSDALHPELPALLAASRVSLVAKLFN 630
                  9*******************77799*****************998888899*********************************************** PP

                  SHCH....B--.........CSSSECCCCCSBHHHHHHHHHHHHHHHHCTSEEEEEEEE-SSSS--TT---HHHHHHHHHHTTHHHHHHHHHHSSSEE CS
  Myosin_head 530 eeek....eakaeakksekkkkkkkkkkkfktvgskfkeslaeLmktlestnphfvRCikpnekkkakkldeslvleqlrclGvlegirirraGfpnR 623
                   e      +a ++a     ++  ++ + k + v+  f ++l +Lm++l +t+ph+vRCikpn +++a++++++l l+qlrc G+ + + ++ +Gfp+R
   KOO22083.1 631 TEAAepaaDADENAPPPTPTRGGDAASGKVRGVAGSFARQLDSLMSMLGQTTPHYVRCIKPNTTQQAARFEAALTLQQLRCGGTPQLLMLMGRGFPTR 728
                  988844333333333345567778888999******************************************************************** PP

                  EEHHHHHHHHGGGSTTSS-SS.SSSHHHHHHHHHHHTT CS
  Myosin_head 624 itfeefvqrYkllakkelkkllkedakkaveailkele 661
                  +++e +  rY+  ++  ++     + +++++a+l +l 
   KOO22083.1 729 VEYEALAGRYQPRLPALAHAA--LTPREFAQALLGSLG 764
                  **********98888776444..577777777777764 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.0       1.1   2.8e+03      96     117 ..      60      83 ..      58      98 .. 0.73
   2 !   19.9   0.0   2.7e-07    0.0007       4      87 ..     144     237 ..     140     248 .. 0.74
   3 ?   -2.8   0.0       2.7   6.9e+03      51      70 ..     749     769 ..     742     815 .. 0.76

  Alignments for each domain:
  == domain 1  score: -1.5 bits;  conditional E-value: 1.1
      AAA_22  96 iiDEaqhlr..seealeeLrslln 117
                 + D+aq +   ++++l +Lr+++ 
  KOO22083.1  60 VADNAQLFYldEANLLDNLRTRYA 83 
                 568888875545888888887765 PP

  == domain 2  score: 19.9 bits;  conditional E-value: 2.7e-07
      AAA_22   4 tagilvvtGesGtGKTtllrrlleqldeeakaee........erpevv.fvtlpsst..sskdllrellralglelkaerlsseellealeqalr 87 
                 t++++vv GesG+GKT ++r +++ l  ++ +e         +  +v+  + +++ t  + ++ + +l ++++ + ++  l+ + ++++l + +r
  KOO22083.1 144 TDQSIVVSGESGAGKTESCRAIVQYLAHHSRHEAgslasallAANPVLeAFGCAATTrnTNSSRFGKLMKIWTAKDSS-ALNGSSVVTYLLEKAR 237
                 7899********************998777777788988888555555555555555557777788888888877776.6666666655555555 PP

  == domain 3  score: -2.8 bits;  conditional E-value: 2.7
      AAA_22  51 t.sskdllrellralglelka 70 
                   ++++++++ll  lgl   +
  KOO22083.1 749 AlTPREFAQALLGSLGLVEAK 769
                 358999999999999987666 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.0       1.5   3.8e+03      81     105 ..      47      80 ..       3      96 .. 0.59
   2 !   16.0   0.8     3e-06    0.0077      14      77 ..     141     205 ..     133     240 .. 0.82
   3 ?   -3.0   1.3         2   5.1e+03     143     169 ..     873     904 ..     865     921 .. 0.52

  Alignments for each domain:
  == domain 1  score: -2.6 bits;  conditional E-value: 1.5
      AAA_30  81 k.........grarlepg.tllivDEagmvdtkql 105
                 +           + ++++ +l+  DEa ++d+  +
  KOO22083.1  47 AvffkspsagP-TGVADNaQLFYLDEANLLDNLRT 80 
                 15555555532.33444449999999999887665 PP

  == domain 2  score: 16.0 bits;  conditional E-value: 3e-06
      AAA_30  14 ltsgdrvavltGpAGtGKttalkalreaweaa.ggrviglAptgkaAkvLaeelgieastiakll 77 
                 l ++d+  v+ G  G+GKt + +a+++ ++++  ++   lA+   aA+ + e++g +a t +   
  KOO22083.1 141 LDHTDQSIVVSGESGAGKTESCRAIVQYLAHHsRHEAGSLASALLAANPVLEAFGCAATTRNTNS 205
                 556677899****************99999997899999**********999***9888866554 PP

  == domain 3  score: -3.0 bits;  conditional E-value: 2
      AAA_30 143 aagigtaeLtevvRqk....e.seeraaalal 169
                  a++ +a +++vvR +    + s+eraaa+ l
  KOO22083.1 873 RAKHAAAAMQSVVRGRsvraQlSRERAAARLL 904
                 35667777777777641111112333333333 PP

>> TsaE  Threonylcarbamoyl adenosine biosynthesis protein TsaE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0     7e-05      0.18      18      46 ..     139     172 ..     127     180 .. 0.74

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 7e-05
                 H.....TEEEEEEESTTSSHHHHHHHHHHHTT-- CS
        TsaE  18 l.....gdvilLeGdLGaGKTtlvrglakalgve 46 
                 +      + i+ +G+ GaGKT  +r++++ l ++
  KOO22083.1 139 MaldhtDQSIVVSGESGAGKTESCRAIVQYLAHH 172
                 233333566********************99775 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.4   5.4e-05      0.14      21      52 ..     142     178 ..     130     296 .. 0.68
   2 ?    0.9   0.0      0.21   5.4e+02      51     131 ..     597     680 ..     586     690 .. 0.61
   3 ?   -1.5   0.6       1.1   2.9e+03      83     127 ..     892     918 ..     824     931 .] 0.50

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 5.4e-05
      AAA_16  21 sgrpelvllsGesGvGKsslvrellralekd.....g 52 
                 +++ +++++sGesG GK+   r++ ++l  +     g
  KOO22083.1 142 DHTDQSIVVSGESGAGKTESCRAIVQYLAHHsrheaG 178
                 444489*****************99877766444440 PP

  == domain 2  score: 0.9 bits;  conditional E-value: 0.21
      AAA_16  51 dggiflrgkcdqlesaipysalaqalareellrqlldeaesaeleawrekleealaavpelagaea........srllellkrll.alls 131
                 d + f++ + d l+ +   ++ + a++r +l+++l + +++ e++a+++  e a  ++p   g++a         +++++l +l+ +l +
  KOO22083.1 597 DSAGFISKNSDALHPE---LPALLAASRVSLVAKLFNTEAA-EPAADAD--ENAPPPTPTRGGDAAsgkvrgvaGSFARQLDSLMsMLGQ 680
                 4577888888888444...4555555588999999988333.4444444..444445555555555666767777777777777644444 PP

  == domain 3  score: -1.5 bits;  conditional E-value: 1.1
      AAA_16  83 rqlldeaesaeleawrekleealaavpelagaea.....srllellkrll 127
                 +ql +e ++a                       +      rll++ ++l+
  KOO22083.1 892 AQLSRERAAA-----------------------RllqarARLLAHRRALV 918
                 1122221111.......................02222244444444444 PP

>> Sigma54_activat  Sigma-54 interaction domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   0.00011      0.27      11      46 ..     134     173 ..     127     211 .. 0.73

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00011
                      HHHHHHHHCTSSS-EEEECSTTSSHHHHHHHHHH....HS CS
  Sigma54_activat  11 lleqikkvaktdlsvlitGesGtGKellaraihe....as 46 
                        +++ ++ +td s+++ GesG+GK+   rai +    +s
       KOO22083.1 134 RARRAMALDHTDQSIVVSGESGAGKTESCRAIVQylahHS 173
                      455666677889***************9999987443222 PP

>> PRK  Phosphoribulokinase / Uridine kinase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.9   0.1   0.00045       1.2       2      46 ..     148     192 ..     147     208 .. 0.75
   2 ?   -0.4   0.0      0.32   8.1e+02     157     185 ..     669     697 ..     667     705 .. 0.81

  Alignments for each domain:
  == domain 1  score: 8.9 bits;  conditional E-value: 0.00045
         PRK   2 IgvagsSGaGkttvarklekifgrekvkaaeiegdsflrldraek 46 
                 I v+g+SGaGkt   r++++ +++++ + a+    ++l  + +++
  KOO22083.1 148 IVVSGESGAGKTESCRAIVQYLAHHSRHEAGSLASALLAANPVLE 192
                 789********************9888866665555555555555 PP

  == domain 2  score: -0.4 bits;  conditional E-value: 0.32
         PRK 157 rsleavldsilrrkpdyvnyikpqfsead 185
                 r+l++ ++ +    p yv++ikp   +  
  KOO22083.1 669 RQLDSLMSMLGQTTPHYVRCIKPNTTQQA 697
                 5678888888899**********987655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (931 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       539  (0.030063); expected 358.6 (0.02)
Passed bias filter:                      335  (0.0186848); expected 358.6 (0.02)
Passed Vit filter:                        51  (0.00284455); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.72u 0.29s 00:00:01.01 Elapsed: 00:00:00.43
# Mc/sec: 6539.84
//
Query:       KOO22084.1  [L=743]
Description: hypothetical protein Ctob_002697 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.1e-11   44.3   3.9     0.0083   16.7   0.0    5.0  5  VCBS             Repeat domain in Vibrio, Colwellia, Bradyrhi
    2.6e-07   31.0   0.0      1e-06   29.1   0.0    2.0  2  EF-hand_7        EF-hand domain pair
    1.4e-06   28.3  14.3    0.00035   20.6   1.9    4.5  4  FG-GAP           FG-GAP repeat
     0.0071   15.7   0.1        3.7    6.9   0.0    2.4  2  TcdB_toxin_midN  Insecticide toxin TcdB middle/N-terminal reg
  ------ inclusion threshold ------
      0.024   14.7   0.0        2.5    8.2   0.0    2.5  2  TIG              IPT/TIG domain
       0.14   12.2   5.8       0.74    9.9   0.0    3.5  4  EF-hand_6        EF-hand domain
       0.15   11.6   0.0       0.15   11.6   0.0    4.5  6  EF-hand_1        EF hand
        0.4   10.3   0.0        0.4   10.3   0.0    4.1  4  EF-hand_5        EF hand
       0.87    9.6   4.0        4.1    7.5   2.8    2.8  2  DUF1658          Protein of unknown function (DUF1658)


Domain annotation for each model (and alignments):
>> VCBS  Repeat domain in Vibrio, Colwellia, Bradyrhizobium and Shewanella
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.0   4.2e-06    0.0083      47      61 .]      65      79 ..      44     111 .. 0.73
   2 !   10.3   0.2   0.00043      0.85      40      61 .]     157     178 ..     139     178 .. 0.79
   3 ?    0.6   0.0      0.45     9e+02      34      57 ..     234     257 ..     217     257 .. 0.74
   4 !   12.6   0.0   7.9e-05      0.16       1      23 [.     330     353 ..     330     372 .. 0.88
   5 ?   -1.6   0.0       2.2   4.3e+03      46      56 ..     532     542 ..     518     544 .. 0.76

  Alignments for each domain:
  == domain 1  score: 16.7 bits;  conditional E-value: 4.2e-06
        VCBS 47 avgDlDgDGdlDllv 61
                ++gDlDgDG++Dllv
  KOO22084.1 65 TLGDLDGDGRADLLV 79
                666666666666665 PP

  == domain 2  score: 10.3 bits;  conditional E-value: 0.00043
        VCBS  40 sgggtgvavgDlDgDGdlDllv 61 
                 ++g++ +++ D D DGdlDl+v
  KOO22084.1 157 AYGHARPYLIDADLDGDLDLFV 178
                 6777789*************98 PP

  == domain 3  score: 0.6 bits;  conditional E-value: 0.45
        VCBS  34 ktslggsgggtgvavgDlDgDGdl 57 
                 +  + ++++++++a+gD Dg G++
  KOO22084.1 234 SLVSLAPNASVALAFGDPDGSGRP 257
                 44444577888999***9999985 PP

  == domain 4  score: 12.6 bits;  conditional E-value: 7.9e-05
        VCBS   1 DldgDGrlDlvvan.dgglrvyrn 23 
                 DldgDG+ Dl++++ +g+ rv++ 
  KOO22084.1 330 DLDGDGDNDLLAISpNGRRRVFVS 353
                 9************97788888865 PP

  == domain 5  score: -1.6 bits;  conditional E-value: 2.2
        VCBS  46 vavgDlDgDGd 56 
                 va  Dl+ DG 
  KOO22084.1 532 VATHDLNSDGL 542
                 55668888875 PP

>> EF-hand_7  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.6   0.0       8.2   1.6e+04      50      59 ..     326     335 ..     314     336 .. 0.72
   2 !   29.1   0.0   5.2e-10     1e-06       4      68 ..     484     550 ..     482     551 .. 0.82

  Alignments for each domain:
  == domain 1  score: -3.6 bits;  conditional E-value: 8.2
   EF-hand_7  50 fkefDtdkdG 59 
                    +D+d+dG
  KOO22084.1 326 ALIVDLDGDG 335
                 5557888887 PP

  == domain 2  score: 29.1 bits;  conditional E-value: 5.2e-10
   EF-hand_7   4 lkeaFkelDtdgdgyldkeellrllrkifqga...gegsklsdeelellfkefDtdkdGvisfdEFlk 68 
                  ++aF  +D + +  l+++el+ ++ +  + a    e+  +++ +++l++   D+++dG +sfdEF++
  KOO22084.1 484 WHDAFITHDANANAQLEPQELEGAIAHARA-AgalPEATLVDEAAVRLFVATHDLNSDGLLSFDEFQA 550
                 589*******************76664333.25866666667777*********************97 PP

>> FG-GAP  FG-GAP repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.6   1.9   1.8e-07   0.00035       6      22 ..      65      81 ..      63      94 .. 0.84
   2 ?   -0.6   0.1      0.77   1.5e+03      11      20 ..     169     178 ..     167     190 .. 0.75
   3 !   12.3   0.5   7.1e-05      0.14       7      21 ..     328     342 ..     325     349 .. 0.79
   4 ?   -0.3   0.0       0.6   1.2e+03       9      15 ..     536     542 ..     531     543 .. 0.76

  Alignments for each domain:
  == domain 1  score: 20.6 bits;  conditional E-value: 1.8e-07
                EEESTSSSSS-EEEEEE CS
      FG-GAP  6 avgDvNGDGyaDLavGA 22
                ++gD++GDG aDL+vG 
  KOO22084.1 65 TLGDLDGDGRADLLVGV 81
                68**************6 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 0.77
                 SSSSS-EEEE CS
      FG-GAP  11 NGDGyaDLav 20 
                 + DG  DL v
  KOO22084.1 169 DLDGDLDLFV 178
                 4566666655 PP

  == domain 3  score: 12.3 bits;  conditional E-value: 7.1e-05
                 EESTSSSSS-EEEEE CS
      FG-GAP   7 vgDvNGDGyaDLavG 21 
                  +D++GDG  DL+  
  KOO22084.1 328 IVDLDGDGDNDLLAI 342
                 68***********98 PP

  == domain 4  score: -0.3 bits;  conditional E-value: 0.6
                 STSSSSS CS
      FG-GAP   9 DvNGDGy 15 
                 D+N DG+
  KOO22084.1 536 DLNSDGL 542
                 ******7 PP

>> TcdB_toxin_midN  Insecticide toxin TcdB middle/N-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.1   0.0    0.0031       6.3      28      52 ..      61      85 ..      47     100 .. 0.78
   2 !    6.9   0.0    0.0019       3.7      29      60 ..     325     354 ..     312     372 .. 0.72

  Alignments for each domain:
  == domain 1  score: 6.1 bits;  conditional E-value: 0.0031
  TcdB_toxin_midN 28 dtnlslaDldGdGladlvltipsag 52
                      +  +l+DldGdG adl++ + s +
       KOO22084.1 61 RCVPTLGDLDGDGRADLLVGVASGA 85
                     566789**********998776654 PP

  == domain 2  score: 6.9 bits;  conditional E-value: 0.0019
  TcdB_toxin_midN  29 tnlslaDldGdGladlvltipsagtgavqkat 60 
                      t   ++DldGdG  dl+  +p+     v +  
       KOO22084.1 325 T-ALIVDLDGDGDNDLLAISPNGR-RRVFVSA 354
                      4.4589*********999999877.4444433 PP

>> TIG  IPT/TIG domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.7   0.0     0.033        67      51      85 .]     399     442 ..     390     442 .. 0.86
   2 ?    8.2   0.0    0.0012       2.5       3      26 ..     448     471 ..     447     494 .. 0.87

  Alignments for each domain:
  == domain 1  score: 3.7 bits;  conditional E-value: 0.033
         TIG  51 ttlvcttPpgp.........sgllnvsvlvdgaqlrsdnttftY 85 
                 +++ c++P +          +g++++ ++ +++q+++ ++t++Y
  KOO22084.1 399 DSVSCVPPRIDgypglprayAGPYRIELTANDQQWTQRALTYEY 442
                 6677777777777788888799********************99 PP

  == domain 2  score: 8.2 bits;  conditional E-value: 0.0012
         TIG   3 issisPnsgsasgGttititGtnF 26 
                 ++s++P+sg++ gGt i ++G ++
  KOO22084.1 448 VTSLYPSSGPSLGGTFIQVRGVGL 471
                 79*********************9 PP

>> EF-hand_6  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.9   0.9         9   1.8e+04      10      16 ..      68      74 ..      67      76 .. 0.86
   2 ?   -3.4   0.4       6.8   1.3e+04      10      15 ..     330     335 ..     328     336 .. 0.82
   3 ?    3.4   0.0     0.044        87       2      27 ..     484     509 ..     483     516 .. 0.88
   4 ?    9.9   0.0   0.00037      0.74       8      25 ..     534     551 ..     528     551 .. 0.88

  Alignments for each domain:
  == domain 1  score: -3.9 bits;  conditional E-value: 9
   EF-hand_6 10 DkdgdGk 16
                D dgdG 
  KOO22084.1 68 DLDGDGR 74
                89***95 PP

  == domain 2  score: -3.4 bits;  conditional E-value: 6.8
   EF-hand_6  10 DkdgdG 15 
                 D dgdG
  KOO22084.1 330 DLDGDG 335
                 999998 PP

  == domain 3  score: 3.4 bits;  conditional E-value: 0.044
   EF-hand_6   2 lreaFklfDkdgdGkidaeElrkalr 27 
                 +++aF  +D + + ++ ++El  a+ 
  KOO22084.1 484 WHDAFITHDANANAQLEPQELEGAIA 509
                 689******************98875 PP

  == domain 4  score: 9.9 bits;  conditional E-value: 0.00037
   EF-hand_6   8 lfDkdgdGkidaeElrka 25 
                  +D + dG ++++E+++a
  KOO22084.1 534 THDLNSDGLLSFDEFQAA 551
                 69*************986 PP

>> EF-hand_1  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.4      0.68   1.4e+03      10      16 ..      68      74 ..      66      77 .. 0.85
   2 ?   -2.9   0.4       3.4   6.7e+03      10      17 ..     167     174 ..     165     176 .. 0.58
   3 ?   -2.7   0.1       2.9   5.7e+03      10      15 ..     250     255 ..     247     256 .. 0.88
   4 ?    0.6   0.2      0.26   5.2e+02       8      15 ..     328     335 ..     322     336 .. 0.80
   5 ?   -0.1   0.0      0.43   8.5e+02       3      27 ..     485     509 ..     483     511 .. 0.85
   6 ?   11.6   0.0   7.7e-05      0.15       9      25 ..     535     551 ..     529     552 .. 0.90

  Alignments for each domain:
  == domain 1  score: -0.7 bits;  conditional E-value: 0.68
                TTTSSSE CS
   EF-hand_1 10 DkDgdGk 16
                D DgdG+
  KOO22084.1 68 DLDGDGR 74
                9*****7 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 3.4
                 TTTSSSEE CS
   EF-hand_1  10 DkDgdGkI 17 
                 D D dG +
  KOO22084.1 167 DADLDGDL 174
                 66666655 PP

  == domain 3  score: -2.7 bits;  conditional E-value: 2.9
                 TTTSSS CS
   EF-hand_1  10 DkDgdG 15 
                 D Dg+G
  KOO22084.1 250 DPDGSG 255
                 99***9 PP

  == domain 4  score: 0.6 bits;  conditional E-value: 0.26
                 HHTTTSSS CS
   EF-hand_1   8 efDkDgdG 15 
                 ++D DgdG
  KOO22084.1 328 IVDLDGDG 335
                 68*****9 PP

  == domain 5  score: -0.1 bits;  conditional E-value: 0.43
                 HHHHHHHTTTSSSEEEHHHHHHHHH CS
   EF-hand_1   3 keiFrefDkDgdGkIdfeEfkellk 27 
                  ++F   D + + +++ +E+  +++
  KOO22084.1 485 HDAFITHDANANAQLEPQELEGAIA 509
                 6899999************987765 PP

  == domain 6  score: 11.6 bits;  conditional E-value: 7.7e-05
                 HTTTSSSEEEHHHHHHH CS
   EF-hand_1   9 fDkDgdGkIdfeEfkel 25 
                  D + dG ++f+Ef+++
  KOO22084.1 535 HDLNSDGLLSFDEFQAA 551
                 69************975 PP

>> EF-hand_5  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.5   2.2      0.51     1e+03       9      15 ..      68      74 ..      67      74 .. 0.93
   2 ?   -2.8   1.4       2.7   5.4e+03       8      13 ..     168     173 ..     165     175 .. 0.65
   3 ?    0.2   1.7       0.3     6e+02       8      14 ..     329     335 ..     328     336 .. 0.89
   4 ?   10.3   0.0    0.0002       0.4       9      23 ..     536     550 ..     536     551 .. 0.95

  Alignments for each domain:
  == domain 1  score: -0.5 bits;  conditional E-value: 0.51
                -SS-SSC CS
   EF-hand_5  9 DlNgDGk 15
                Dl+gDG+
  KOO22084.1 68 DLDGDGR 74
                9*****7 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 2.7
                 H-SS-S CS
   EF-hand_5   8 iDlNgD 13 
                 +Dl+gD
  KOO22084.1 168 ADLDGD 173
                 567776 PP

  == domain 3  score: 0.2 bits;  conditional E-value: 0.3
                 H-SS-SS CS
   EF-hand_5   8 iDlNgDG 14 
                 +Dl+gDG
  KOO22084.1 329 VDLDGDG 335
                 7*****9 PP

  == domain 4  score: 10.3 bits;  conditional E-value: 0.0002
                 -SS-SSCE-HHHHHH CS
   EF-hand_5   9 DlNgDGkIskeELkt 23 
                 DlN DG +s++E+++
  KOO22084.1 536 DLNSDGLLSFDEFQA 550
                 9************95 PP

>> DUF1658  Protein of unknown function (DUF1658)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.0       1.7   3.5e+03       2       9 ..      53      64 ..      53      65 .. 0.86
   2 ?    7.5   2.8    0.0021       4.1       4      17 ..     298     314 ..     298     314 .. 0.90

  Alignments for each domain:
  == domain 1  score: -1.7 bits;  conditional E-value: 1.7
     DUF1658  2 klK....TrriP 9 
                +lK    Tr++P
  KOO22084.1 53 ALKaageTRCVP 64
                6888888****9 PP

  == domain 2  score: 7.5 bits;  conditional E-value: 0.0021
     DUF1658   4 KTrriPARPs...HGrd 17 
                 +++r+P+RP+   ++++
  KOO22084.1 298 PSFRVPRRPTdllPPNP 314
                 69********9999886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (743 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       292  (0.0162865); expected 358.6 (0.02)
Passed bias filter:                      232  (0.0129399); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.57u 0.23s 00:00:00.80 Elapsed: 00:00:00.40
# Mc/sec: 5534.98
//
Query:       KOO22085.1  [L=223]
Description: hypothetical protein Ctob_002696 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    6.8e-06   26.4   0.1    1.5e-05   25.2   0.0    1.5  1  Sacchrp_dh_NADP  Saccharopine dehydrogenase NADP binding doma
  ------ inclusion threshold ------
       0.11   12.9   0.1       0.22   11.9   0.1    1.5  1  SPOR             Sporulation related domain
       0.17   12.0   0.0       0.35   10.9   0.0    1.7  1  Shikimate_DH     Shikimate / quinate 5-dehydrogenase


Domain annotation for each model (and alignments):
>> Sacchrp_dh_NADP  Saccharopine dehydrogenase NADP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.2   0.0   2.5e-09   1.5e-05      16     101 ..       5      99 ..       3     119 .. 0.87

  Alignments for each domain:
  == domain 1  score: 25.2 bits;  conditional E-value: 2.5e-09
                      HHHCTCCT-GEEEEEESSHHHHHHHHCHH..........TTTCEEEEE--TTTHHHHHHHHHTTSSEEEE-SSGG...GHHHHHHHHHHHT-EE CS
  Sacchrp_dh_NADP  16 llarhfdvdaeitvadrskeklealaaka..........lgvrfeaialdaenyeavLaallkegdlvvnlsppi...ssldvlkaCietgvhy 96 
                      ll++++ v  ++ va+rs ++++ala+++            +r+ a+ +daen ++  ++ +   d++vn+++        ++++++++++ hy
       KOO22085.1   5 LLEQSSTV--KLLVAGRSIDNAQALADQLnseyppasakDPQRVRAYCIDAENTSS-FER-VPRFDVLVNATTMSaveGLITLMRFAASKRSHY 94 
                      57888888..9*****************9**********9****************.888.7999********99774445************* PP

                      EESS- CS
  Sacchrp_dh_NADP  97 vdtsi 101
                      +d  +
       KOO22085.1  95 LDLKV 99 
                      **776 PP

>> SPOR  Sporulation related domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.1   3.7e-05      0.22      10      34 ..      16      40 ..      10      49 .. 0.81

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 3.7e-05
                -EES-HHHHHHHHHHCCHHT--... CS
        SPOR 10 gafsseanAerlaakLrakgfaaav 34
                 a +s +nA++la++L++++++a +
  KOO22085.1 16 VAGRSIDNAQALADQLNSEYPPASA 40
                4899***************998763 PP

>> Shikimate_DH  Shikimate / quinate 5-dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   5.8e-05      0.35      33      59 ..       8      34 ..       1      92 [. 0.88

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 5.8e-05
                  CCT-CEEEEEESSHHHHHHHHHHHT.E CS
  Shikimate_DH 33 akgvkkvvvaNRtlerakelaeelkge 59
                  +++  k++va+R++++a++la++l++e
    KOO22085.1  8 QSSTVKLLVAGRSIDNAQALADQLNSE 34
                  3456679****************9665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (223 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       323  (0.0180155); expected 358.6 (0.02)
Passed bias filter:                      304  (0.0169558); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.41u 0.27s 00:00:00.68 Elapsed: 00:00:00.41
# Mc/sec: 1620.63
//
Query:       KOO22086.1  [L=344]
Description: ankyrin repeat-containing protein, partial [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.9e-32  110.1   4.5    1.3e-15   57.7   0.6    3.3  3  Ank_2     Ankyrin repeats (3 copies)
    6.8e-21   74.1   6.6    2.7e-05   24.4   0.1    4.5  4  Ank_5     Ankyrin repeats (many copies)
    2.1e-20   72.8   2.8    2.4e-08   34.3   0.0    4.2  4  Ank_4     Ankyrin repeats (many copies)
    5.2e-15   55.1  18.9     0.0035   17.7   0.2    5.9  6  Ank       Ankyrin repeat
      3e-14   51.7   3.8      0.018   15.5   0.0    5.5  5  Ank_3     Ankyrin repeat


Domain annotation for each model (and alignments):
>> Ank_2  Ankyrin repeats (3 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.7   0.6   3.6e-19   1.3e-15       1      78 [.      42     126 ..      42     131 .. 0.85
   2 !   51.2   0.1   3.9e-17   1.4e-13      24      80 ..     131     194 ..     124     197 .. 0.85
   3 ?    2.2   0.0     0.079   2.8e+02      28      47 ..     201     220 ..     189     264 .. 0.70

  Alignments for each domain:
  == domain 1  score: 57.7 bits;  conditional E-value: 3.6e-19
       Ank_2   1 LhlAakngnlelvklLl.egadpn..k.ngktaLhyAakngnleivklLle.h.....adndgrtpLhyAarsghleivklLlekgad 78 
                 L  A++ g   +v+lLl ++a +n  + +g t+L++A+ +gn ++v+lLl  h     a+++g tpL++A+ +gh ++++lLl   a 
  KOO22086.1  42 LLRACNGG---CVQLLLaAHAAVNqaDrKGVTPLIVACVKGNGDCVRLLLGaHavvdqATSTGSTPLIMACDKGHGDCAQLLLAAHAA 126
                 5679999*...******99999997548**********************635885555599*********************55454 PP

  == domain 2  score: 51.2 bits;  conditional E-value: 3.9e-17
       Ank_2  24 k.ngktaLhyAakngnleivklLle.h.....adndgrtpLhyAarsghleivklLlekgadin 80 
                 + +g t+L++A+++g+ +++klLl+ h     ad++g tpL++A+ +gh +ivklL+  ga  +
  KOO22086.1 131 DsDGVTPLFAACIKGDGDCAKLLLNaHaavdqADSNGGTPLMAACIKGHGDIVKLLVHAGARTD 194
                 2489********************954887777799*********************7788655 PP

  == domain 3  score: 2.2 bits;  conditional E-value: 0.079
       Ank_2  28 taLhyAakngnleivklLle 47 
                 taL +A  +g++ i+++L +
  KOO22086.1 201 TALDLAEAQGHTVIARFLRS 220
                 55555555555555555543 PP

>> Ank_5  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.4   0.1   7.5e-09   2.7e-05       1      41 [.      54      91 ..      54     102 .. 0.85
   2 !   24.3   0.0   8.1e-09   2.9e-05      13      53 ..      98     138 ..      89     138 .. 0.88
   3 !   21.3   0.1   6.7e-08   0.00024       6      53 ..     124     171 ..     121     171 .. 0.93
   4 !   21.7   0.4   5.1e-08   0.00018      13      56 .]     164     206 ..     157     206 .. 0.85

  Alignments for each domain:
  == domain 1  score: 24.4 bits;  conditional E-value: 7.5e-09
       Ank_5  1 LlehgpadvnrldgggntpLhvAakygaadvvrlLlargad 41
                Ll++  a+vn  d++g+tpL+vA+ +g+ d+vrlLl  ga+
  KOO22086.1 54 LLAAH-AAVNQADRKGVTPLIVACVKGNGDCVRLLL--GAH 91
                66776.9*****************************..333 PP

  == domain 2  score: 24.3 bits;  conditional E-value: 8.1e-09
       Ank_5  13 dgggntpLhvAakygaadvvrlLlargadlnltdsrGltal 53 
                    g tpL++A+ +g+ d+++lLla +a+ ++ ds+G t+l
  KOO22086.1  98 TSTGSTPLIMACDKGHGDCAQLLLAAHAAVDQADSDGVTPL 138
                 56788********************************9987 PP

  == domain 3  score: 21.3 bits;  conditional E-value: 6.7e-08
       Ank_5   6 padvnrldgggntpLhvAakygaadvvrlLlargadlnltdsrGltal 53 
                 +a+v+  d +g+tpL  A+ +g  d+++lLl+ +a+ ++ ds+G t+l
  KOO22086.1 124 HAAVDQADSDGVTPLFAACIKGDGDCAKLLLNAHAAVDQADSNGGTPL 171
                 3889999***************************************97 PP

  == domain 4  score: 21.7 bits;  conditional E-value: 5.1e-08
       Ank_5  13 dgggntpLhvAakygaadvvrlLlargadlnltdsrGltaldlA 56 
                 d +g tpL+ A+ +g+ d+v+lL+  ga ++l+++ G taldlA
  KOO22086.1 164 DSNGGTPLMAACIKGHGDIVKLLVHAGARTDLRCAAG-TALDLA 206
                 34444*******************99********998.****98 PP

>> Ank_4  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.7   0.2   1.3e-07   0.00046      15      55 .]      49      88 ..      40      88 .. 0.87
   2 !   31.4   0.1   5.7e-11   2.1e-07       2      55 .]     102     154 ..     101     154 .. 0.95
   3 !   34.3   0.0   6.8e-12   2.4e-08       3      55 .]     136     187 ..     134     187 .. 0.95
   4 ?   -1.0   0.0      0.82   2.9e+03       3      23 ..     201     221 ..     199     225 .. 0.82

  Alignments for each domain:
  == domain 1  score: 20.7 bits;  conditional E-value: 1.3e-07
       Ank_4 15 elvrlLlekgadinaqdnrsGetalhiAakrgnveilklLl 55
                 +v+lLl+  a +n   +r G t+l+ A+ +gn ++++lLl
  KOO22086.1 49 GCVQLLLAAHAAVNQA-DRKGVTPLIVACVKGNGDCVRLLL 88
                5899999999999997.***********************8 PP

  == domain 2  score: 31.4 bits;  conditional E-value: 5.7e-11
       Ank_4   2 ltaLhyaaisgrlelvrlLlekgadinaqdnrsGetalhiAakrgnveilklLl 55 
                 +t+L +a+ +g+ ++++lLl+  a ++   +++G t+l  A+ +g+ +++klLl
  KOO22086.1 102 STPLIMACDKGHGDCAQLLLAAHAAVDQA-DSDGVTPLFAACIKGDGDCAKLLL 154
                 699*****************999989886.***********************8 PP

  == domain 3  score: 34.3 bits;  conditional E-value: 6.8e-12
       Ank_4   3 taLhyaaisgrlelvrlLlekgadinaqdnrsGetalhiAakrgnveilklLl 55 
                 t+L++a+i+g+ ++++lLl+  a ++   +++G t+l  A+ +g+ +i+klL+
  KOO22086.1 136 TPLFAACIKGDGDCAKLLLNAHAAVDQA-DSNGGTPLMAACIKGHGDIVKLLV 187
                 89*****************999999997.**********************96 PP

  == domain 4  score: -1.0 bits;  conditional E-value: 0.82
       Ank_4   3 taLhyaaisgrlelvrlLlek 23 
                 taL+ a ++g++ ++r+L ++
  KOO22086.1 201 TALDLAEAQGHTVIARFLRSR 221
                 789999999999999998776 PP

>> Ank  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.1   0.7    0.0022         8       6      31 ..      42      65 ..      41      66 .. 0.78
   2 !   14.8   0.0     8e-06     0.029       2      26 ..      68      91 ..      67      99 .. 0.81
   3 !   12.4   0.2   4.7e-05      0.17       2      30 ..     101     130 ..     100     132 .. 0.79
   4 !   13.1   0.1   2.9e-05       0.1       1      29 [.     133     162 ..     133     165 .. 0.74
   5 !   17.7   0.2   9.9e-07    0.0035       2      26 ..     167     192 ..     166     198 .. 0.79
   6 ?   -2.0   0.0       1.6   5.9e+03       4      21 ..     201     218 ..     201     230 .. 0.58

  Alignments for each domain:
  == domain 1  score: 7.1 bits;  conditional E-value: 0.0022
                HHHHHHHTTHHHHHHHH..TTTSTTCBT CS
         Ank  6 LHlAatngkkriiklLL..hGAnlnald 31
                L +A+++g   +++lLL  h A +n+ d
  KOO22086.1 42 LLRACNGG---CVQLLLaaHAA-VNQAD 65
                5579*999...******85555.88776 PP

  == domain 2  score: 14.8 bits;  conditional E-value: 8e-06
                SBBHHHHHHHHTTHHHHHHHHTTTS CS
         Ank  2 GnTPLHlAatngkkriiklLLhGAn 26
                G TPL +A+  g+ ++++lLL GA 
  KOO22086.1 68 GVTPLIVACVKGNGDCVRLLL-GAH 91
                99*******667778******.863 PP

  == domain 3  score: 12.4 bits;  conditional E-value: 4.7e-05
                 SBBHHHHHHHHTTHHHHHHHH..TTTSTTCB CS
         Ank   2 GnTPLHlAatngkkriiklLL..hGAnlnal 30 
                 G TPL +A+  g+ ++++lLL  h A +++ 
  KOO22086.1 101 GSTPLIMACDKGHGDCAQLLLaaHAA-VDQA 130
                 88*******888888******75544.6655 PP

  == domain 4  score: 13.1 bits;  conditional E-value: 2.9e-05
                 TSBBHHHHHHHHTTHHHHHHHH..TTTSTTC CS
         Ank   1 dGnTPLHlAatngkkriiklLL..hGAnlna 29 
                 dG TPL  A+  g+ +++klLL  h A +++
  KOO22086.1 133 DGVTPLFAACIKGDGDCAKLLLnaHAA-VDQ 162
                 8*********555566******64434.665 PP

  == domain 5  score: 17.7 bits;  conditional E-value: 9.9e-07
                 SBBHHHHHHHHTTHHHHHHHHT.TTS CS
         Ank   2 GnTPLHlAatngkkriiklLLh.GAn 26 
                 G TPL+ A+  g+ +i+klL+h GA 
  KOO22086.1 167 GGTPLMAACIKGHGDIVKLLVHaGAR 192
                 66*******667777****9976984 PP

  == domain 6  score: -2.0 bits;  conditional E-value: 1.6
                 BHHHHHHHHTTHHHHHHH CS
         Ank   4 TPLHlAatngkkriiklL 21 
                 T+L lA   g++ i+++L
  KOO22086.1 201 TALDLAEAQGHTVIARFL 218
                 788886445665566644 PP

>> Ank_3  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   0.2      0.91   3.3e+03       8      30 ..      44      62 ..      40      63 .. 0.56
   2 !   10.3   0.0   0.00026      0.93       2      23 ..      68      89 ..      67      95 .. 0.88
   3 !   10.5   0.0   0.00022      0.78       2      28 ..     101     126 ..     100     129 .. 0.85
   4 !   11.6   0.0   9.6e-05      0.34       1      29 [.     133     160 ..     133     162 .. 0.86
   5 !   15.5   0.0   5.1e-06     0.018       1      26 [.     166     190 ..     166     194 .. 0.89

  Alignments for each domain:
  == domain 1  score: -0.6 bits;  conditional E-value: 0.91
       Ank_3  8 lAarsgnleivkfLlenkgadvn 30
                +A+  g+   v++Ll   +a vn
  KOO22086.1 44 RACNGGC---VQLLLA-AHAAVN 62
                3444443...778887.566665 PP

  == domain 2  score: 10.3 bits;  conditional E-value: 0.00026
       Ank_3  2 GetpLhlAarsgnleivkfLle 23
                G tpL +A+  gn + v++Ll 
  KOO22086.1 68 GVTPLIVACVKGNGDCVRLLLG 89
                88******************97 PP

  == domain 3  score: 10.5 bits;  conditional E-value: 0.00022
       Ank_3   2 GetpLhlAarsgnleivkfLlenkgad 28 
                 G tpL +A+  g+ + +++Ll   +a 
  KOO22086.1 101 GSTPLIMACDKGHGDCAQLLLA-AHAA 126
                 89*************9999999.5555 PP

  == domain 4  score: 11.6 bits;  conditional E-value: 9.6e-05
       Ank_3   1 nGetpLhlAarsgnleivkfLlenkgadv 29 
                 +G tpL+ A+  g+ + +k+Ll+  +a v
  KOO22086.1 133 DGVTPLFAACIKGDGDCAKLLLN-AHAAV 160
                 689*************9999999.55555 PP

  == domain 5  score: 15.5 bits;  conditional E-value: 5.1e-06
       Ank_3   1 nGetpLhlAarsgnleivkfLlenkg 26 
                 nG tpL+ A+  g+ +ivk+L+   g
  KOO22086.1 166 NGGTPLMAACIKGHGDIVKLLVH-AG 190
                 789******************97.45 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (344 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1667  (0.0929779); expected 358.6 (0.02)
Passed bias filter:                      702  (0.0391544); expected 358.6 (0.02)
Passed Vit filter:                       114  (0.00635841); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.59u 0.26s 00:00:00.85 Elapsed: 00:00:00.41
# Mc/sec: 2527.83
//
Query:       KOO22087.1  [L=630]
Description: protein deltex-2 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.7e-25   87.5   1.4    3.5e-13   49.9   0.0    2.8  2  WWE       WWE domain
    4.7e-09   35.9   0.0    1.3e-08   34.4   0.0    1.8  1  ART       NAD:arginine ADP-ribosyltransferase


Domain annotation for each model (and alignments):
>> WWE  WWE domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.9   0.0   3.9e-17   3.5e-13       2      68 .]     479     554 ..     478     554 .. 0.83
   2 !   35.0   0.9   1.8e-12   1.6e-08       3      67 ..     565     627 ..     564     628 .. 0.90

  Alignments for each domain:
  == domain 1  score: 49.9 bits;  conditional E-value: 3.9e-17
                 EEEEEEET-TCEEE--HHHHHHHHHHHHT.T-SEE.....EHHHHTTS........TTEEEETTTTEEEETTT--EEEEEE CS
         WWE   2 vvWeweddggeWeeYspevsellEeayqk.kkksv.....elsfsvag........apYtvdfnsmvQtnkgtgtsrrVrR 68 
                 ++W w ddg++W++Y+ + ++ +E+a+ + k  +v     +      g         +Y+++f +m+Q+n +t++ r+VrR
  KOO22087.1 479 AAWSWLDDGDRWKPYEGALAASIEAAFGDaKRVTVdlhavST-----GarvsgkhsSTYVINFDEMMQYNMSTKFGRPVRR 554
                 68**************************95444444444433.....234555888************************9 PP

  == domain 2  score: 35.0 bits;  conditional E-value: 1.8e-12
                 EEEEEET-TCEEE--HHHHHHHHHHHHTT-SEEEHHHHTTSTTEEEETTTTEEEETTT--EEEEE CS
         WWE   3 vWeweddggeWeeYspevsellEeayqkkkksvelsfsvagapYtvdfnsmvQtnkgtgtsrrVr 67 
                 +Wew+d +++W++Y+p+ + ++  a  ++ +     ++++  +Y vdf+  vQ n +t++ r++r
  KOO22087.1 565 TWEWQDTDSSWKAYHPSACGQIALARRAGRQGTL--LYAGRWNYWVDFSRSVQSNMSTHKERPIR 627
                 6******9*****************777655554..45699***********************9 PP

>> ART  NAD:arginine ADP-ribosyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.4   0.0   1.4e-12   1.3e-08      24     217 ..      98     311 ..      80     314 .. 0.77

  Alignments for each domain:
  == domain 1  score: 34.4 bits;  conditional E-value: 1.4e-12
         ART  24 psllkeefaakqalaesweqakkkwk........erkakle........lpegfkdehg..iAllaYtss..selyrelneavreaGrs..reeylsnf 100
                 p++ k  +++ q+   +weq+k                  e         +  ++d +    Al  Yt+s  ++  r  +  vr++      e  +s++
  KOO22087.1  98 PTPAKRKVKMIQQITAAWEQNKDGATpphkrgvcS-----EanykvftdAGVALEDAQCcvFALSFYTGSgsNQASRGASLQVRKGNMMmnNEGEVSEY 191
                 56666677777777777777777666665333330.....13344445599999999863369999*99987788888888888744321122334444 PP

         ART 101 ..dfkalhfyLtraLqlLrkdsqrcsqvyRgvkglrfsrakkgksvRfgqFtssslkkkvae.efgqdtllsiktclgvpIkefskfp.sedevLIppf 195
                   ++  + ++L+ aL  L    + c + y + +       ++g+ +   qF s+    ++a+ + g +  ++i++  g +I  fs +  +edevL  pf
  KOO22087.1 192 ldKYNHIIYFLSMALRNLPYYWGYCVR-YITLNDDTAAIYEPGSVITWMQFSSTKKGSEAASsFRGRNCKFIIWSIKGRHIARFSNYAaEEDEVLFTPF 289
                 44578899************8888877.889998999999**************99988887366999*****************9862689******* PP

         ART 196 evFkvtnlskeegkskiqLrsi 217
                 +   v++ ++++g+  i+Lr++
  KOO22087.1 290 TRLLVIKREHSDGHYVIHLREV 311
                 *******999*********986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (630 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       450  (0.025099); expected 358.6 (0.02)
Passed bias filter:                      399  (0.0222544); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.53u 0.25s 00:00:00.78 Elapsed: 00:00:00.38
# Mc/sec: 4922.70
//
Query:       KOO22088.1  [L=143]
Description: hypothetical protein Ctob_002563 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
     0.0067   15.9   0.0     0.0078   15.7   0.0    1.1  1  Peptidase_S9  Prolyl oligopeptidase family


Domain annotation for each model (and alignments):
>> Peptidase_S9  Prolyl oligopeptidase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.0   4.3e-07    0.0078     116     171 ..      47     103 ..      15     115 .. 0.77

  Alignments for each domain:
  == domain 1  score: 15.7 bits;  conditional E-value: 4.3e-07
                   CCC--TTTCHHHHHHHHHH-CGGG-----EEEEEEETT-SSS-THHHHHHHHHHH..- CS
  Peptidase_S9 116 mewgnpeeneegykelspyspldnvkaypplLlihGlaDdrvppaealklvaaLq..k 171
                   + +g+p en++  ++ sp + +++ +   p +l+h+  Dd v+++ea+ l++ L+   
    KOO22088.1  47 QAFGEPAENPD-WRANSPTAVAAQAAPVGPCMLLHSPGDDYVQVQEAVALYEVLKpaP 103
                   45678878888.668999999999889*************************999533 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (143 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       204  (0.0113782); expected 358.6 (0.02)
Passed bias filter:                      173  (0.00964917); expected 358.6 (0.02)
Passed Vit filter:                        11  (0.000613531); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.23s 00:00:00.59 Elapsed: 00:00:00.38
# Mc/sec: 1128.14
//
Query:       KOO22089.1  [L=513]
Description: ankyrin repeat protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.3e-60  199.7  22.7    1.3e-16   60.9   0.2    4.7  5  Ank_2     Ankyrin repeats (3 copies)
    4.2e-50  167.5   5.5    2.7e-10   40.6   0.0    6.3  7  Ank_4     Ankyrin repeats (many copies)
    1.3e-42  142.4  25.6    2.5e-05   24.5   0.1    9.2  9  Ank       Ankyrin repeat
    5.5e-36  122.2  11.2    1.7e-10   40.9   0.1    7.3  8  Ank_5     Ankyrin repeats (many copies)
    3.5e-33  109.9   3.4     0.0083   16.6   0.0    8.6  8  Ank_3     Ankyrin repeat
      3e-05   24.1   0.0    6.7e-05   23.0   0.0    1.5  2  THUMP     THUMP domain
  ------ inclusion threshold ------
       0.12   12.5   0.0       0.55   10.3   0.0    2.1  1  DUF2148   Uncharacterized protein containing a ferredoxin dom


Domain annotation for each model (and alignments):
>> Ank_2  Ankyrin repeats (3 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.9   0.0   5.2e-15   1.3e-11      12      83 .]     127     200 ..     120     200 .. 0.82
   2 !   60.9   0.2   5.1e-20   1.3e-16       1      83 []     141     233 ..     141     233 .. 0.91
   3 !   38.4   0.3   5.4e-13   1.4e-09      22      81 ..     198     264 ..     195     266 .. 0.83
   4 !   55.1   0.9   3.4e-18   8.6e-15       1      83 []     240     332 ..     240     332 .. 0.89
   5 !   44.6   1.7   6.5e-15   1.7e-11       2      76 ..     307     391 ..     307     398 .. 0.88

  Alignments for each domain:
  == domain 1  score: 44.9 bits;  conditional E-value: 5.2e-15
       Ank_2  12 lvklLl.egadpnkngktaLhyAakngnleivklLleh......adndgrtpLhyAarsghleivklLlekgadinlkd 83 
                 +v  L+ +g     ++ t+Lh+Aa+ g +e +k+Ll++      +d+d  tpLh+Aa+ g++e+++ Ll  ga ++++d
  KOO22089.1 127 MVLELMaAG-----DESTPLHLAAEWGRTESIKALLAAgaaidaQDQDESTPLHMAASTGQTEAIEALLAAGAPVDARD 200
                 555555233.....347*******************96678776669999*******99**********9999988876 PP

  == domain 2  score: 60.9 bits;  conditional E-value: 5.1e-20
       Ank_2   1 LhlAakngnlelvklLl.egadpn..k.ngktaLhyAakngnleivklLleh......adndgrtpLhyAarsghleivklLlekgadinlkd 83 
                 LhlAa+ g +e +k Ll +ga ++  + ++ t+Lh Aa+ g++e++++Ll++       d+dg tpL++Aa++gh e ++ L+  ga+++++d
  KOO22089.1 141 LHLAAEWGRTESIKALLaAGAAIDaqDqDESTPLHMAASTGQTEAIEALLAAgapvdaRDEDGATPLQVAAFNGHAESIQTLVAAGASVHARD 233
                 8*****9989********999999853799********************977886655599*********************99****9987 PP

  == domain 3  score: 38.4 bits;  conditional E-value: 5.4e-13
       Ank_2  22 pnk.ngktaLhyAakngnleivklLleh.....adndgr.tpLhyAarsghleivklLlekgadinl 81 
                 +++ +g t+L++Aa ng+ e +++L+++     a++dg+ t+Lh+Aa++gh  ++k Ll  ga i++
  KOO22089.1 198 ARDeDGATPLQVAAFNGHAESIQTLVAAgasvhARDDGNaTALHVAAEKGHVLLIKALLAAGAAIEA 264
                 443489********************95656665566666*******************88988765 PP

  == domain 4  score: 55.1 bits;  conditional E-value: 3.4e-18
       Ank_2   1 LhlAakngnlelvklLl.egadpn.k..ngktaLhyAakngnleivklLleh......adndgrtpLhyAarsghleivklLlekgadinlkd 83 
                 Lh+Aa++g+  l+k Ll +ga ++ +  +  t+Lh+Aak g+++ +++L++       ++++  tpLh+Aa +gh+e ++ L+  ga+++ +d
  KOO22089.1 240 LHVAAEKGHVLLIKALLaAGAAIEaQehESITPLHLAAKFGQTDSIEALVAGgafvnaLTDEKATPLHLAAYYGHTESIRALVAAGASVHSRD 332
                 8*******999*******999998734699********************95567444448899*******************99***99887 PP

  == domain 5  score: 44.6 bits;  conditional E-value: 6.5e-15
       Ank_2   2 hlAakngnlelvklLl.egadpn..k.ngktaLhyAakngnleivklLleh......adndgrtpLhyAarsghleivklLlekg 76 
                 hlAa++g++e ++ L+ +ga ++  + ++ t+Lh Aa+ ++++ +++L+++      +d +  tpLh+Aa++++ + +k+L+  g
  KOO22089.1 307 HLAAYYGHTESIRALVaAGASVHsrDdEKSTPLHMAAEMDHTQSIQALVAAgasaeaQDINKATPLHLAAKHKNKKSFKVLMAAG 391
                 89**************9999999763699********************96667666667789*********99*******9655 PP

>> Ank_4  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.6   0.0     1e-13   2.7e-10       2      55 .]     138     190 ..     137     190 .. 0.96
   2 !   37.6   0.0   8.8e-13   2.3e-09       2      54 ..     171     222 ..     170     223 .. 0.96
   3 !   16.7   0.0   3.2e-06    0.0083      13      48 ..     215     249 ..     214     249 .. 0.90
   4 !   35.1   0.1   5.3e-12   1.4e-08       3      55 .]     238     289 ..     236     289 .. 0.96
   5 !   38.2   0.1     6e-13   1.5e-09       3      55 .]     304     355 ..     302     355 .. 0.97
   6 !   35.2   0.0     5e-12   1.3e-08       3      54 ..     337     387 ..     335     388 .. 0.96
   7 ?   -2.6   0.0       3.6   9.2e+03       2      11 ..     425     434 ..     424     438 .. 0.77

  Alignments for each domain:
  == domain 1  score: 40.6 bits;  conditional E-value: 1e-13
       Ank_4   2 ltaLhyaaisgrlelvrlLlekgadinaqdnrsGetalhiAakrgnveilklLl 55 
                 +t+Lh aa+ gr+e+++ Ll+ ga i+aq + +  t+lh+Aa++g+ e+++ Ll
  KOO22089.1 138 STPLHLAAEWGRTESIKALLAAGAAIDAQ-DQDESTPLHMAASTGQTEAIEALL 190
                 79***************************.88899****************997 PP

  == domain 2  score: 37.6 bits;  conditional E-value: 8.8e-13
       Ank_4   2 ltaLhyaaisgrlelvrlLlekgadinaqdnrsGetalhiAakrgnveilklL 54 
                 +t+Lh+aa+ g++e+++ Ll+ ga ++a+ +++G t+l+ Aa +g+ e ++ L
  KOO22089.1 171 STPLHMAASTGQTEAIEALLAAGAPVDAR-DEDGATPLQVAAFNGHAESIQTL 222
                 79***************************.****************9999988 PP

  == domain 3  score: 16.7 bits;  conditional E-value: 3.2e-06
       Ank_4  13 rlelvrlLlekgadinaqdnrsGetalhiAakrgnv 48 
                 + e+++ L++ ga+++a+ ++   talh Aa +g+v
  KOO22089.1 215 HAESIQTLVAAGASVHAR-DDGNATALHVAAEKGHV 249
                 66899*************.88788**********96 PP

  == domain 4  score: 35.1 bits;  conditional E-value: 5.3e-12
       Ank_4   3 taLhyaaisgrlelvrlLlekgadinaqdnrsGetalhiAakrgnveilklLl 55 
                 taLh aa++g++ l++ Ll+ ga i aq   +  t+lh Aak+g+ + ++ L+
  KOO22089.1 238 TALHVAAEKGHVLLIKALLAAGAAIEAQ-EHESITPLHLAAKFGQTDSIEALV 289
                 89**************************.******************999985 PP

  == domain 5  score: 38.2 bits;  conditional E-value: 6e-13
       Ank_4   3 taLhyaaisgrlelvrlLlekgadinaqdnrsGetalhiAakrgnveilklLl 55 
                 t+Lh aa++g++e++r L++ ga+++ + +++  t+lh+Aa + + + ++ L+
  KOO22089.1 304 TPLHLAAYYGHTESIRALVAAGASVHSR-DDEKSTPLHMAAEMDHTQSIQALV 355
                 89**************************.9*******************9995 PP

  == domain 6  score: 35.2 bits;  conditional E-value: 5e-12
       Ank_4   3 taLhyaaisgrlelvrlLlekgadinaqdnrsGetalhiAakrgnveilklL 54 
                 t+Lh+aa++ ++++++ L++ ga+  aq +++  t+lh Aak+ n++ +k L
  KOO22089.1 337 TPLHMAAEMDHTQSIQALVAAGASAEAQ-DINKATPLHLAAKHKNKKSFKVL 387
                 99**************************.****************9999987 PP

  == domain 7  score: -2.6 bits;  conditional E-value: 3.6
       Ank_4   2 ltaLhyaais 11 
                 l++Lh+a ++
  KOO22089.1 425 LEPLHAAPAD 434
                 7899999886 PP

>> Ank  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.3   0.0   2.3e-08   5.9e-05       1      31 [.     136     167 ..     136     168 .. 0.92
   2 !   21.0   0.0   1.2e-07   0.00032       1      31 [.     169     200 ..     169     201 .. 0.92
   3 !   21.3   0.1   9.9e-08   0.00025       1      32 []     202     234 ..     202     234 .. 0.96
   4 !   15.7   0.5     6e-06     0.015       4      29 ..     238     264 ..     237     266 .. 0.89
   5 !   19.1   0.0   5.1e-07    0.0013       4      31 ..     271     299 ..     270     300 .. 0.90
   6 !   24.5   0.1   9.8e-09   2.5e-05       4      32 .]     304     333 ..     303     333 .. 0.95
   7 !   18.4   0.0   8.6e-07    0.0022       4      31 ..     337     365 ..     335     366 .. 0.93
   8 !   10.4   0.1   0.00028      0.72       4      22 ..     370     388 ..     367     399 .. 0.81
   9 ?   -1.1   0.6       1.2     3e+03      14      24 ..     474     488 ..     427     496 .. 0.51

  Alignments for each domain:
  == domain 1  score: 23.3 bits;  conditional E-value: 2.3e-08
                 TSBBHHHHHHHHTTHHHHHHHH.TTTSTTCBT CS
         Ank   1 dGnTPLHlAatngkkriiklLL.hGAnlnald 31 
                 d  TPLHlAa  g ++ ik+LL  GA ++a+d
  KOO22089.1 136 DESTPLHLAAEWGRTESIKALLaAGAAIDAQD 167
                 567*******99**********88*88***99 PP

  == domain 2  score: 21.0 bits;  conditional E-value: 1.2e-07
                 TSBBHHHHHHHHTTHHHHHHHH.TTTSTTCBT CS
         Ank   1 dGnTPLHlAatngkkriiklLL.hGAnlnald 31 
                 d  TPLH+Aa+ g+++ i++LL  GA ++a+d
  KOO22089.1 169 DESTPLHMAASTGQTEAIEALLaAGAPVDARD 200
                 567*******99**********88******99 PP

  == domain 3  score: 21.3 bits;  conditional E-value: 9.9e-08
                 TSBBHHHHHHHHTTHHHHHHHH.TTTSTTCBTT CS
         Ank   1 dGnTPLHlAatngkkriiklLL.hGAnlnaldn 32 
                 dG TPL +Aa ng+++ i+ L+  GA+++a+d+
  KOO22089.1 202 DGATPLQVAAFNGHAESIQTLVaAGASVHARDD 234
                 899*******************88*******96 PP

  == domain 4  score: 15.7 bits;  conditional E-value: 6e-06
                 BHHHHHHHHTTHHHHHHHH.TTTSTTC CS
         Ank   4 TPLHlAatngkkriiklLL.hGAnlna 29 
                 T+LH+Aa  g++  ik+LL  GA + a
  KOO22089.1 238 TALHVAAEKGHVLLIKALLaAGAAIEA 264
                 9******************88986766 PP

  == domain 5  score: 19.1 bits;  conditional E-value: 5.1e-07
                 BHHHHHHHHTTHHHHHHHH.TTTSTTCBT CS
         Ank   4 TPLHlAatngkkriiklLL.hGAnlnald 31 
                 TPLHlAa +g+++ i++L+  GA +nal+
  KOO22089.1 271 TPLHLAAKFGQTDSIEALVaGGAFVNALT 299
                 *******************5579999998 PP

  == domain 6  score: 24.5 bits;  conditional E-value: 9.8e-09
                 BHHHHHHHHTTHHHHHHHH.TTTSTTCBTT CS
         Ank   4 TPLHlAatngkkriiklLL.hGAnlnaldn 32 
                 TPLHlAa++g+++ i++L+  GA+++++d+
  KOO22089.1 304 TPLHLAAYYGHTESIRALVaAGASVHSRDD 333
                 9******************88*****9995 PP

  == domain 7  score: 18.4 bits;  conditional E-value: 8.6e-07
                 BHHHHHHHHTTHHHHHHHH.TTTSTTCBT CS
         Ank   4 TPLHlAatngkkriiklLL.hGAnlnald 31 
                 TPLH+Aa  ++++ i++L+  GA+  a+d
  KOO22089.1 337 TPLHMAAEMDHTQSIQALVaAGASAEAQD 365
                 9******99**********88*9998888 PP

  == domain 8  score: 10.4 bits;  conditional E-value: 0.00028
                 BHHHHHHHHTTHHHHHHHH CS
         Ank   4 TPLHlAatngkkriiklLL 22 
                 TPLHlAa  ++k   k L 
  KOO22089.1 370 TPLHLAAKHKNKKSFKVLM 388
                 9******888888888775 PP

  == domain 9  score: -1.1 bits;  conditional E-value: 1.2
                 T....HHHHHHHHTT CS
         Ank  14 k....kriiklLLhG 24 
                      ++++ +LL+G
  KOO22089.1 474 LtgfdLEVVAFLLQG 488
                 133445677777776 PP

>> Ank_5  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.5   0.0   1.3e-05     0.034      16      46 ..     137     167 ..     131     170 .. 0.89
   2 !   40.9   0.1   6.5e-14   1.7e-10       1      56 []     156     210 ..     156     210 .. 0.92
   3 !   26.0   0.6   3.3e-09   8.3e-06       1      56 []     222     276 ..     222     276 .. 0.97
   4 !   17.4   0.0   1.7e-06    0.0042       1      47 [.     255     300 ..     255     302 .. 0.91
   5 !   31.8   0.1   4.7e-11   1.2e-07       7      56 .]     293     342 ..     288     342 .. 0.92
   6 !   23.0   0.1   2.8e-08   7.1e-05       1      56 []     321     375 ..     321     375 .. 0.97
   7 !   12.5   0.0   5.7e-05      0.15       1      38 [.     354     390 ..     354     397 .. 0.71
   8 ?   -2.3   0.0       2.5   6.3e+03       9      23 ..     417     431 ..     414     431 .. 0.82

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 1.3e-05
       Ank_5  16 gntpLhvAakygaadvvrlLlargadlnltd 46 
                   tpLh+Aa+ g+ + ++ Lla ga+++++d
  KOO22089.1 137 ESTPLHLAAEWGRTESIKALLAAGAAIDAQD 167
                 34*************************9998 PP

  == domain 2  score: 40.9 bits;  conditional E-value: 6.5e-14
       Ank_5   1 LlehgpadvnrldgggntpLhvAakygaadvvrlLlargadlnltdsrGltaldlA 56 
                 Ll++g a+++++d++  tpLh+Aa+ g  + ++ Lla ga  +++d++G t+l++A
  KOO22089.1 156 LLAAG-AAIDAQDQDESTPLHMAASTGQTEAIEALLAAGAPVDARDEDGATPLQVA 210
                 89999.66666777777*************************************98 PP

  == domain 3  score: 26.0 bits;  conditional E-value: 3.3e-09
       Ank_5   1 LlehgpadvnrldgggntpLhvAakygaadvvrlLlargadlnltdsrGltaldlA 56 
                 L+++g a+v ++d g  t+LhvAa++g+  +++ Lla ga++ +++ +  t+l+lA
  KOO22089.1 222 LVAAG-ASVHARDDGNATALHVAAEKGHVLLIKALLAAGAAIEAQEHESITPLHLA 276
                 78999.************************************************98 PP

  == domain 4  score: 17.4 bits;  conditional E-value: 1.7e-06
       Ank_5   1 LlehgpadvnrldgggntpLhvAakygaadvvrlLlargadlnltds 47 
                 Ll++g a++ +++ ++ tpLh+Aak g  d ++ L+a ga  n+ ++
  KOO22089.1 255 LLAAG-AAIEAQEHESITPLHLAAKFGQTDSIEALVAGGAFVNALTD 300
                 78889.99999999999********************9999998775 PP

  == domain 5  score: 31.8 bits;  conditional E-value: 4.7e-11
       Ank_5   7 advnrldgggntpLhvAakygaadvvrlLlargadlnltdsrGltaldlA 56 
                 a vn+l  ++ tpLh+Aa+yg+ + +r L+a ga+   +d++ +t+l++A
  KOO22089.1 293 AFVNALTDEKATPLHLAAYYGHTESIRALVAAGASVHSRDDEKSTPLHMA 342
                 55899999999*************************************98 PP

  == domain 6  score: 23.0 bits;  conditional E-value: 2.8e-08
       Ank_5   1 LlehgpadvnrldgggntpLhvAakygaadvvrlLlargadlnltdsrGltaldlA 56 
                 L+++g a+v  +d ++ tpLh+Aa+  + + ++ L+a ga++ ++d +  t+l+lA
  KOO22089.1 321 LVAAG-ASVHSRDDEKSTPLHMAAEMDHTQSIQALVAAGASAEAQDINKATPLHLA 375
                 78999.9****************************************99*****98 PP

  == domain 7  score: 12.5 bits;  conditional E-value: 5.7e-05
       Ank_5   1 LlehgpadvnrldgggntpLhvAakygaadvvrlLlar 38 
                 L+++g a+  ++d ++ tpLh+Aak+ +   +++L+a 
  KOO22089.1 354 LVAAG-ASAEAQDINKATPLHLAAKHKNKKSFKVLMAA 390
                 78999.56666666666********8876666666655 PP

  == domain 8  score: -2.3 bits;  conditional E-value: 2.5
       Ank_5   9 vnrldgggntpLhvA 23 
                 v +++ ++ +pLh A
  KOO22089.1 417 VRTWRHCRLEPLHAA 431
                 678888999****77 PP

>> Ank_3  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.0     4e-06      0.01       3      30 ..     138     164 ..     136     165 .. 0.91
   2 !   16.6   0.0   3.2e-06    0.0083       3      30 ..     171     197 ..     169     198 .. 0.92
   3 !    9.8   0.0    0.0005       1.3       1      30 [.     202     230 ..     202     231 .. 0.92
   4 !   15.2   0.1   8.7e-06     0.022       3      29 ..     237     262 ..     235     264 .. 0.90
   5 !   11.7   0.0   0.00012      0.32       3      27 ..     270     293 ..     268     297 .. 0.88
   6 !   15.9   0.0   5.3e-06     0.014       3      30 ..     303     329 ..     301     330 .. 0.91
   7 !    9.3   0.0   0.00074       1.9       3      28 ..     336     360 ..     334     363 .. 0.86
   8 !    6.8   0.0    0.0048        12       2      21 ..     368     387 ..     367     394 .. 0.77

  Alignments for each domain:
  == domain 1  score: 16.3 bits;  conditional E-value: 4e-06
       Ank_3   3 etpLhlAarsgnleivkfLlenkgadvn 30 
                  tpLhlAa+ g++e +k+Ll   ga ++
  KOO22089.1 138 STPLHLAAEWGRTESIKALLA-AGAAID 164
                 69***********99******.899987 PP

  == domain 2  score: 16.6 bits;  conditional E-value: 3.2e-06
       Ank_3   3 etpLhlAarsgnleivkfLlenkgadvn 30 
                  tpLh+Aa+ g +e +++Ll   ga+v+
  KOO22089.1 171 STPLHMAASTGQTEAIEALLA-AGAPVD 197
                 69*******************.899997 PP

  == domain 3  score: 9.8 bits;  conditional E-value: 0.0005
       Ank_3   1 nGetpLhlAarsgnleivkfLlenkgadvn 30 
                 +G tpL +Aa +g+ e ++ L+   ga v+
  KOO22089.1 202 DGATPLQVAAFNGHAESIQTLVA-AGASVH 230
                 699************99******.899987 PP

  == domain 4  score: 15.2 bits;  conditional E-value: 8.7e-06
       Ank_3   3 etpLhlAarsgnleivkfLlenkgadv 29 
                  t+Lh+Aa+ g++ ++k+Ll   ga +
  KOO22089.1 237 ATALHVAAEKGHVLLIKALLA-AGAAI 262
                 69*******************.89887 PP

  == domain 5  score: 11.7 bits;  conditional E-value: 0.00012
       Ank_3   3 etpLhlAarsgnleivkfLlenkga 27 
                  tpLhlAa++g ++ +++L+   ga
  KOO22089.1 270 ITPLHLAAKFGQTDSIEALVA-GGA 293
                 59***********99****99.676 PP

  == domain 6  score: 15.9 bits;  conditional E-value: 5.3e-06
       Ank_3   3 etpLhlAarsgnleivkfLlenkgadvn 30 
                  tpLhlAa +g++e +++L+   ga v+
  KOO22089.1 303 ATPLHLAAYYGHTESIRALVA-AGASVH 329
                 69***********99******.899886 PP

  == domain 7  score: 9.3 bits;  conditional E-value: 0.00074
       Ank_3   3 etpLhlAarsgnleivkfLlenkgad 28 
                  tpLh+Aa+ +++  +++L+   ga 
  KOO22089.1 336 STPLHMAAEMDHTQSIQALVA-AGAS 360
                 69***********88****99.6775 PP

  == domain 8  score: 6.8 bits;  conditional E-value: 0.0048
       Ank_3   2 GetpLhlAarsgnleivkfL 21 
                   tpLhlAa++ n +  k L
  KOO22089.1 368 KATPLHLAAKHKNKKSFKVL 387
                 57********9998645555 PP

>> THUMP  THUMP domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.0       4.1     1e+04      59      88 ..     358     386 ..     345     386 .. 0.69
   2 !   23.0   0.0   2.6e-08   6.7e-05      85     143 ..     438     495 ..     429     496 .. 0.90

  Alignments for each domain:
  == domain 1  score: -3.5 bits;  conditional E-value: 4.1
                 EEESSHHHHHHHHHHHHHHHHHHCT-EEEE CS
       THUMP  59 vceadledileaakeivkkkfeeeketFaV 88 
                 +  a+ +di++a+      k++++k +F+V
  KOO22089.1 358 GASAEAQDINKATPLHLAAKHKNKK-SFKV 386
                 5566777888887776666666655.8887 PP

  == domain 2  score: 23.0 bits;  conditional E-value: 2.6e-08
                 EEEEEEEESSSTSSSHHHHHHHHHHHHHHCCTT-EE-SSS-SEEEEEEEETTEEEEEEE CS
       THUMP  85 tFaVrvkrrgkhfeftsreinrevGkaivektglkVdlenPdivvrveiikdkayisid 143
                 +F+  + r g h  f s+++++++G+a++ +  l+Vdl+ +d+ v + +++ +++++i+
  KOO22089.1 438 SFRANAVRDGMH-AFKSVDLAQAIGAAVHLQRRLRVDLTGFDLEVVAFLLQGELLVGIN 495
                 677777777888.********************************************98 PP

>> DUF2148  Uncharacterized protein containing a ferredoxin domain (DUF2148)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.0   0.00021      0.55       6      29 ..     450     473 ..     446     476 .. 0.93

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.00021
     DUF2148   6 afkaiDlGiAlgsavkvaadlrvD 29 
                 afk++Dl+ A+g+av   ++lrvD
  KOO22089.1 450 AFKSVDLAQAIGAAVHLQRRLRVD 473
                 89*********************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (513 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       524  (0.0292264); expected 358.6 (0.02)
Passed bias filter:                      333  (0.0185733); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.58u 0.26s 00:00:00.84 Elapsed: 00:00:00.43
# Mc/sec: 3592.99
//
Query:       KOO22090.1  [L=166]
Description: calreticulin [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.5e-22   79.2   0.0    3.2e-22   78.9   0.0    1.0  1  Calreticulin  Calreticulin family


Domain annotation for each model (and alignments):
>> Calreticulin  Calreticulin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   78.9   0.0   1.8e-26   3.2e-22       2     147 ..      21     160 ..      20     165 .. 0.82

  Alignments for each domain:
  == domain 1  score: 78.9 bits;  conditional E-value: 1.8e-26
  Calreticulin   2 veqFeeeeelekrwikska.kkedeeakYkgkwsveepkklkglegdkgLvlkskakhhaisaklekpiklkkkdLvvqYevklqe..glecggayi 95 
                    e+F+   ++e+rw+  +   k        gk++v++ k +   e +kgL+ +++ + ++i++k++k  + k k+Lvvq+  k+q+     cgg+yi
    KOO22090.1  21 EENFSG--DWESRWQAGTPpGK------EMGKFAVTSGKWFVDEEAEKGLTCTEDMRFYSITSKMPKMASSKGKPLVVQFSAKVQNhqYAYCGGGYI 109
                   577776..89999998888322......24556666666666667899************************************9943468****** PP

  Calreticulin  96 kLlseeeekdleefsdktpytimFGpdkc.gstnkvhfilrkknpktgeieek 147
                   kLl +++  d+++fs + +y++mFGpd c  + +++h i+++k ++  + e+ 
    KOO22090.1 110 KLLPDKA--DYSKFSGDDEYNVMFGPDLCgYDVSHIHAIFNHKGKNLLKSEKV 160
                   *****87..69******************445579********9887666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (166 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       512  (0.0285571); expected 358.6 (0.02)
Passed bias filter:                      472  (0.0263261); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.23s 00:00:00.65 Elapsed: 00:00:00.39
# Mc/sec: 1261.07
//
Query:       KOO22091.1  [L=378]
Description: serine threonine-protein phosphatase pp1-gamma catalytic subunit, partial [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    3.9e-38  132.0   0.1    5.3e-38  131.6   0.1    1.1  1  Metallophos  Calcineurin-like phosphoesterase
      2e-21   76.1   0.1    4.3e-21   75.1   0.1    1.6  1  STPPase_N    Serine-threonine protein phosphatase N-terminal 


Domain annotation for each model (and alignments):
>> Metallophos  Calcineurin-like phosphoesterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  131.6   0.1   5.9e-42   5.3e-38       6     201 ..     121     308 ..     121     311 .. 0.95

  Alignments for each domain:
  == domain 1  score: 131.6 bits;  conditional E-value: 5.9e-42
                  EESBTBTTCCTHHHHHHHHHHHH..HHHTTESEEEEESTSSSSSHHHHHHHHH.HHHHHHHTSEEEEEC-TTS........CHHHHHHHHHHHHHHHH CS
  Metallophos   6 igDlHlalgggqlddllkllddl..lreekpdlvllaGDlvdrgdlekellel.laalvkypipvylllGNHe........gfeeellnkygylgifs 92 
                  +gDlH     gq+ dll+l++    ++e  ++l+l  GD+vdrg  + e++ l la+++kyp +++ll+GNHe        gf++e++++y       
   KOO22091.1 121 TGDLH-----GQYFDLLRLFEYGgfPPE-SNYLFL--GDYVDRGKQSLECICLlLAYKIKYPENFFLLRGNHEcasinriyGFYDECKRRYS-----I 205
                  79***.....**********77763555.99****..*******88888888889***********************************99.....9 PP

                  HHHEHHHCEEETSEEEEEETTEEEEEEEESE.CEEETHHHHHHHHHHHSCHHHHCC...HHHHHHHHHHTTCSEEEEEESSESSCSSSCSCCHHHHHH CS
  Metallophos  93 epwrsdaevfnnlplaslgsgslkvlllhGg.spellvsldklgslnleleapepg...dewlkdlekrekadwvivlgHsplyrgsgylfgdealed 186
                  ++w++++++fn+lp++++++   k+l++hGg sp+l   l+++ ++ +++++p++g   d++++d       + + v g+  + rg +y+fg + + +
   KOO22091.1 206 KLWKTFTDCFNCLPVSAIVDE--KILCMHGGlSPDL-QRLEQISRIMRPTDVPDSGllcDLLWSD-------PDKDVSGWGENDRGVSYTFGADIVSK 293
                  9********************..********77777.****************************.......************************** PP

                  HHHHTTESEEEEESS CS
  Metallophos 187 llkkygvdlvisGHt 201
                  +l+++++dl++++H+
   KOO22091.1 294 FLDDHDLDLICRAHQ 308
                  **************8 PP

>> STPPase_N  Serine-threonine protein phosphatase N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   75.1   0.1   4.8e-25   4.3e-21       1      48 []      15      62 ..      15      62 .. 0.97

  Alignments for each domain:
  == domain 1  score: 75.1 bits;  conditional E-value: 4.8e-25
   STPPase_N  1 vDdiIerLlevrgkpggkkvqLseaEIrqlCakareiFLsQPtLLeLe 48
                vD+iI +Llevrg+++gk+v+L+e++Ir lC+ areiF++QP+LLeLe
  KOO22091.1 15 VDSIIAQLLEVRGSRPGKQVNLRESDIRGLCTSAREIFMNQPVLLELE 62
                8************8888******************************7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (378 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       309  (0.0172346); expected 358.6 (0.02)
Passed bias filter:                      287  (0.0160076); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.46u 0.24s 00:00:00.70 Elapsed: 00:00:00.42
# Mc/sec: 2725.62
//
Query:       KOO22092.1  [L=1928]
Description: protein nlrc3 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.4e-38  127.6 100.6     0.0025   17.7   0.3   29.9 33  LRR_6          Leucine Rich repeat
      2e-14   51.9  12.6         66    4.7   0.0   16.3 16  LRR_1          Leucine Rich Repeat
    8.8e-08   31.2   1.0     0.0053   16.2   0.0    3.7  3  EF-hand_1      EF hand
    2.8e-07   30.7  40.9        2.1    8.9   0.3   15.7 16  LRR_4          Leucine Rich repeats (2 copies)
    7.7e-06   25.6  20.3         22    4.9   0.0   13.6 15  LRR_8          Leucine rich repeat
    1.1e-05   25.8   0.4    5.1e-05   23.6   0.4    2.2  1  EF-hand_7      EF-hand domain pair
    3.7e-05   23.3   0.6      0.039   13.9   0.0    4.0  3  EF-hand_6      EF-hand domain
     0.0016   18.7   1.4         24    5.3   0.1    6.0  5  SpoU_sub_bind  RNA 2'-O ribose methyltransferase substrate bi
  ------ inclusion threshold ------
      0.015   15.1   0.0         21    4.9   0.0    3.6  3  DUF2202        Uncharacterized protein domain (DUF2202)
        0.2   11.3   6.7         88    2.8   0.1    6.3  8  UPF0181        Uncharacterised protein family (UPF0181)
       0.24   12.1   4.8         54    4.8   0.1    3.9  3  Parecho_VpG    Parechovirus Genome-linked protein


Domain annotation for each model (and alignments):
>> LRR_6  Leucine Rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.0       8.2   1.3e+04       3      10 ..     451     458 ..     450     459 .. 0.85
   2 ?   -0.2   0.0      0.88   1.4e+03       2      24 .]     525     547 ..     524     547 .. 0.88
   3 !   10.1   0.0   0.00042      0.68       1      16 [.     552     568 ..     552     573 .. 0.92
   4 ?    4.9   0.6      0.02        32       5      17 ..     635     647 ..     634     648 .. 0.86
   5 !   11.5   0.0   0.00015      0.24       5      19 ..     668     682 ..     668     687 .. 0.91
   6 ?   -1.0   0.0       1.6   2.6e+03      11      24 .]     704     717 ..     696     717 .. 0.82
   7 !    9.3   0.0   0.00076       1.2       5      19 ..     728     742 ..     728     747 .. 0.91
   8 ?   -0.7   0.0       1.3   2.1e+03       9      24 .]     762     777 ..     755     777 .. 0.81
   9 ?    2.6   0.1      0.11   1.8e+02       5      15 ..     842     852 ..     839     854 .. 0.89
  10 !    6.1   0.3     0.008        13       5      16 ..     885     896 ..     882     898 .. 0.90
  11 !    6.6   0.0    0.0057       9.3       4      19 ..     923     938 ..     920     943 .. 0.88
  12 ?   -2.1   0.0       3.6   5.8e+03      14      24 .]     963     973 ..     963     973 .. 0.91
  13 ?   -1.1   0.0       1.7   2.7e+03       9      24 .]     988    1003 ..     985    1003 .. 0.93
  14 !   14.6   0.1   1.6e-05     0.026       5      24 .]    1051    1070 ..    1051    1070 .. 0.97
  15 !    7.5   0.0     0.003       4.9       5      24 .]    1079    1098 ..    1078    1098 .. 0.96
  16 !   12.2   0.1   8.9e-05      0.15       1      19 [.    1103    1122 ..    1103    1125 .. 0.89
  17 !   16.5   0.2   3.7e-06    0.0061       5      24 .]    1137    1156 ..    1134    1156 .. 0.97
  18 !    7.4   0.0    0.0032       5.1       5      24 .]    1167    1186 ..    1166    1186 .. 0.90
  19 ?    0.1   0.1      0.67   1.1e+03       5      15 ..    1262    1272 ..    1261    1274 .. 0.88
  20 !   12.6   0.0   6.9e-05      0.11       5      24 .]    1304    1323 ..    1303    1323 .. 0.96
  21 ?   -1.0   0.0       1.6   2.6e+03       5      22 ..    1348    1365 ..    1347    1367 .. 0.82
  22 ?    3.7   0.0     0.049        80       4      19 ..    1424    1439 ..    1421    1444 .. 0.88
  23 ?   -2.0   0.0       3.3   5.3e+03      14      24 .]    1464    1474 ..    1464    1474 .. 0.91
  24 ?    5.3   0.1     0.015        24       5      24 .]    1485    1504 ..    1485    1504 .. 0.91
  25 ?   -1.7   0.0       2.7   4.4e+03       5      21 ..    1529    1545 ..    1528    1548 .. 0.79
  26 ?   -1.3   0.1         2   3.2e+03      12      24 .]    1564    1576 ..    1561    1576 .. 0.88
  27 ?    3.0   0.6      0.08   1.3e+02       5      15 ..    1624    1634 ..    1623    1637 .. 0.86
  28 ?    4.0   0.2      0.04        65       5      24 .]    1663    1682 ..    1660    1682 .. 0.94
  29 ?    0.5   0.0       0.5   8.1e+02       1      11 [.    1687    1697 ..    1687    1698 .. 0.88
  30 ?    3.5   0.2     0.058        94       5      16 ..    1718    1729 ..    1715    1731 .. 0.88
  31 !   17.7   0.3   1.6e-06    0.0025       5      24 .]    1760    1779 ..    1757    1779 .. 0.95
  32 !    9.1   0.0    0.0009       1.5       3      23 ..    1788    1808 ..    1786    1809 .. 0.88
  33 ?    5.0   1.1     0.019        31       5      16 ..    1818    1829 ..    1818    1831 .. 0.89

  Alignments for each domain:
  == domain 1  score: -3.3 bits;  conditional E-value: 8.2
       LRR_6   3 thLteLdL 10 
                 ++L++L+L
  KOO22092.1 451 NSLESLNL 458
                 68*****9 PP

  == domain 2  score: -0.2 bits;  conditional E-value: 0.88
       LRR_6   2 nthLteLdLsgNdIgDeGaeaLa 24 
                 n+ Lt+L+L++  +g eG +a++
  KOO22092.1 525 NSALTKLSLASTFLGEEGTKAIC 547
                 777********999999999987 PP

  == domain 3  score: 10.1 bits;  conditional E-value: 0.00042
       LRR_6   1 snthLteLdLsgNd.Ig 16 
                 +n +L+eLd+sg+d Ig
  KOO22092.1 552 QNKTLKELDMSGCDnIG 568
                 599***********997 PP

  == domain 4  score: 4.9 bits;  conditional E-value: 0.02
       LRR_6   5 LteLdLsgNdIgD 17 
                 L +LdLs+Nd+ +
  KOO22092.1 635 LMSLDLSHNDLCN 647
                 779*******975 PP

  == domain 5  score: 11.5 bits;  conditional E-value: 0.00015
       LRR_6   5 LteLdLsgNdIgDeG 19 
                 Lt++dL+gN +gDeG
  KOO22092.1 668 LTSVDLRGNWLGDEG 682
                 8*************9 PP

  == domain 6  score: -1.0 bits;  conditional E-value: 1.6
       LRR_6  11 sgNdIgDeGaeaLa 24 
                 sg +Ig +G++ +a
  KOO22092.1 704 SGENIGPAGVKLIA 717
                 5558*******997 PP

  == domain 7  score: 9.3 bits;  conditional E-value: 0.00076
       LRR_6   5 LteLdLsgNdIgDeG 19 
                 Lt+++L+gN++gDeG
  KOO22092.1 728 LTSVELKGNKLGDEG 742
                 89************9 PP

  == domain 8  score: -0.7 bits;  conditional E-value: 1.3
       LRR_6   9 dLsgNdIgDeGaeaLa 24 
                 d+sg +Ig +G++ +a
  KOO22092.1 762 DVSGENIGPAGVKLIA 777
                 566668*******997 PP

  == domain 9  score: 2.6 bits;  conditional E-value: 0.11
       LRR_6   5 LteLdLsgNdI 15 
                 Lt+ dLsgN++
  KOO22092.1 842 LTSIDLSGNEL 852
                 9********97 PP

  == domain 10  score: 6.1 bits;  conditional E-value: 0.008
       LRR_6   5 LteLdLsgNdIg 16 
                 Lt+L+Ls+N++ 
  KOO22092.1 885 LTSLNLSYNQLC 896
                 9*********75 PP

  == domain 11  score: 6.6 bits;  conditional E-value: 0.0057
       LRR_6   4 hLteLdLsgNdIgDeG 19 
                 +Lt++ ++gN++gDeG
  KOO22092.1 923 SLTSVMIRGNKLGDEG 938
                 799999*********9 PP

  == domain 12  score: -2.1 bits;  conditional E-value: 3.6
       LRR_6  14 dIgDeGaeaLa 24 
                 +Ig +G++ +a
  KOO22092.1 963 NIGPAGVKLIA 973
                 79******997 PP

  == domain 13  score: -1.1 bits;  conditional E-value: 1.7
       LRR_6    9 dLsgNdIgDeGaeaLa 24  
                  +L+ N+++ e a+ La
  KOO22092.1  988 NLMRNHLDVESAKMLA 1003
                  799**********997 PP

  == domain 14  score: 14.6 bits;  conditional E-value: 1.6e-05
       LRR_6    5 LteLdLsgNdIgDeGaeaLa 24  
                  Lt+ dLsgN +g eGa aLa
  KOO22092.1 1051 LTKIDLSGNRLGAEGAAALA 1070
                  89****************98 PP

  == domain 15  score: 7.5 bits;  conditional E-value: 0.003
       LRR_6    5 LteLdLsgNdIgDeGaeaLa 24  
                  Lt+L+L++N++  eG +a++
  KOO22092.1 1079 LTKLSLAWNKLEEEGTKAIC 1098
                  9**************99998 PP

  == domain 16  score: 12.2 bits;  conditional E-value: 8.9e-05
       LRR_6    1 snthLteLdLsgNd.IgDeG 19  
                  +n +L+eLdLsg++ Ig+e 
  KOO22092.1 1103 QNKTLKELDLSGHNnIGGEA 1122
                  599*********999**995 PP

  == domain 17  score: 16.5 bits;  conditional E-value: 3.7e-06
       LRR_6    5 LteLdLsgNdIgDeGaeaLa 24  
                  L+eL+++gN I DeG++a++
  KOO22092.1 1137 LKELNIAGNSIKDEGITAIC 1156
                  9******************8 PP

  == domain 18  score: 7.4 bits;  conditional E-value: 0.0032
       LRR_6    5 LteLdLsgNdIgDeGaeaLa 24  
                  L +L+++gN+++ +Ga+a a
  KOO22092.1 1167 LAKLNVAGNNMSPVGATAVA 1186
                  678*************9976 PP

  == domain 19  score: 0.1 bits;  conditional E-value: 0.67
       LRR_6    5 LteLdLsgNdI 15  
                  Lt+ dLs N +
  KOO22092.1 1262 LTSIDLSKNRL 1272
                  9********87 PP

  == domain 20  score: 12.6 bits;  conditional E-value: 6.9e-05
       LRR_6    5 LteLdLsgNdIgDeGaeaLa 24  
                  Lt +d+++N+I ++Gae La
  KOO22092.1 1304 LTRVDVRSNNIAGDGAEQLA 1323
                  89****************98 PP

  == domain 21  score: -1.0 bits;  conditional E-value: 1.6
       LRR_6    5 LteLdLsgNdIgDeGaea 22  
                   teLdL+g ++g eG++ 
  KOO22092.1 1348 FTELDLKGKGVGVEGVMV 1365
                  699***999999999875 PP

  == domain 22  score: 3.7 bits;  conditional E-value: 0.049
       LRR_6    4 hLteLdLsgNdIgDeG 19  
                  +Lt++ L+ N++g eG
  KOO22092.1 1424 TLTSVKLRLNKLGEEG 1439
                  9************999 PP

  == domain 23  score: -2.0 bits;  conditional E-value: 3.3
       LRR_6   14 dIgDeGaeaLa 24  
                  +Ig +G+e +a
  KOO22092.1 1464 NIGPAGVELIA 1474
                  79******997 PP

  == domain 24  score: 5.3 bits;  conditional E-value: 0.015
       LRR_6    5 LteLdLsgNdIgDeGaeaLa 24  
                  Lt +d++ N+I ++Ga  L+
  KOO22092.1 1485 LTRVDVRLNNIVGDGAVQLS 1504
                  89********9999999885 PP

  == domain 25  score: -1.7 bits;  conditional E-value: 2.7
       LRR_6    5 LteLdLsgNdIgDeGae 21  
                   teLdL+g ++g eG++
  KOO22092.1 1529 FTELDLNGKGVGVEGGM 1545
                  699***99888888877 PP

  == domain 26  score: -1.3 bits;  conditional E-value: 2
       LRR_6   12 gNdIgDeGaeaLa 24  
                  gN+++ e a+ La
  KOO22092.1 1564 GNQLDAESAKMLA 1576
                  8*********998 PP

  == domain 27  score: 3.0 bits;  conditional E-value: 0.08
       LRR_6    5 LteLdLsgNdI 15  
                  Lt+LdLs N +
  KOO22092.1 1624 LTSLDLSNNLL 1634
                  9********86 PP

  == domain 28  score: 4.0 bits;  conditional E-value: 0.04
       LRR_6    5 LteLdLsgNdIgDeGaeaLa 24  
                  Lt+ +L+ N++g eG +a++
  KOO22092.1 1663 LTKISLANNELGEEGTKAIC 1682
                  899*************9998 PP

  == domain 29  score: 0.5 bits;  conditional E-value: 0.5
       LRR_6    1 snthLteLdLs 11  
                  +n  L+eLd+s
  KOO22092.1 1687 QNKMLKELDIS 1697
                  5899******9 PP

  == domain 30  score: 3.5 bits;  conditional E-value: 0.058
       LRR_6    5 LteLdLsgNdIg 16  
                  Lt+ +Ls+N++ 
  KOO22092.1 1718 LTSINLSDNQLC 1729
                  9*********86 PP

  == domain 31  score: 17.7 bits;  conditional E-value: 1.6e-06
       LRR_6    5 LteLdLsgNdIgDeGaeaLa 24  
                  Lt+Ld+s N++ DeG++a +
  KOO22092.1 1760 LTALDVSNNCLEDEGVSAVC 1779
                  9****************987 PP

  == domain 32  score: 9.1 bits;  conditional E-value: 0.0009
       LRR_6    3 thLteLdLsgNdIgDeGaeaL 23  
                  t+L +L+ + NdIg +Ga a 
  KOO22092.1 1788 TKLASLNFRNNDIGPVGANAV 1808
                  6899*************9765 PP

  == domain 33  score: 5.0 bits;  conditional E-value: 0.019
       LRR_6    5 LteLdLsgNdIg 16  
                  Lt+L+Ls+N++ 
  KOO22092.1 1818 LTSLNLSSNNLC 1829
                  9********985 PP

>> LRR_1  Leucine Rich Repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.7   0.0      0.04        66       2      14 ..     556     568 ..     555     573 .. 0.88
   2 ?    2.1   0.0      0.27   4.4e+02       2      13 ..     635     646 ..     634     657 .. 0.82
   3 ?    0.2   0.0       1.2   1.9e+03       2      15 ..     668     681 ..     667     691 .. 0.83
   4 ?    2.0   0.0      0.29   4.8e+02       2      13 ..     842     853 ..     841     861 .. 0.85
   5 ?    4.3   0.2     0.053        87       2      15 ..     885     898 ..     884     903 .. 0.83
   6 ?    1.8   0.0      0.36   5.8e+02       2      13 ..    1051    1062 ..    1050    1071 .. 0.81
   7 ?   -1.0   0.0       2.8   4.6e+03       2      13 ..    1079    1090 ..    1078    1099 .. 0.81
   8 ?    2.7   0.0      0.18   2.9e+02       2      15 ..    1107    1120 ..    1106    1124 .. 0.80
   9 ?    3.4   0.0      0.11   1.7e+02       2      20 ..    1137    1155 ..    1136    1160 .. 0.79
  10 ?    0.8   0.1      0.74   1.2e+03       2      15 ..    1262    1274 ..    1261    1280 .. 0.83
  11 ?    3.7   0.0     0.086   1.4e+02       2      13 ..    1624    1635 ..    1623    1646 .. 0.85
  12 ?   -1.9   0.0       5.9   9.6e+03       2       9 ..    1691    1698 ..    1691    1700 .. 0.92
  13 ?    1.2   0.0      0.55   8.9e+02       2      13 ..    1718    1729 ..    1717    1738 .. 0.88
  14 ?    4.6   0.0     0.043        71       2      18 ..    1760    1776 ..    1759    1782 .. 0.83
  15 ?   -1.7   0.0       4.8   7.9e+03       1      13 [.    1789    1801 ..    1789    1808 .. 0.79
  16 ?    4.1   0.0     0.064     1e+02       2      13 ..    1818    1829 ..    1817    1847 .. 0.80

  Alignments for each domain:
  == domain 1  score: 4.7 bits;  conditional E-value: 0.04
       LRR_1   2 LrhLdLsnnpllg 14 
                 L++Ld+s++ ++g
  KOO22092.1 556 LKELDMSGCDNIG 568
                 9********9975 PP

  == domain 2  score: 2.1 bits;  conditional E-value: 0.27
       LRR_1   2 LrhLdLsnnpll 13 
                 L +LdLs+n l 
  KOO22092.1 635 LMSLDLSHNDLC 646
                 668******994 PP

  == domain 3  score: 0.2 bits;  conditional E-value: 1.2
       LRR_1   2 LrhLdLsnnpllgl 15 
                 L++ dL++n l++ 
  KOO22092.1 668 LTSVDLRGNWLGDE 681
                 899******99654 PP

  == domain 4  score: 2.0 bits;  conditional E-value: 0.29
       LRR_1   2 LrhLdLsnnpll 13 
                 L+++dLs+n l 
  KOO22092.1 842 LTSIDLSGNELC 853
                 89*******994 PP

  == domain 5  score: 4.3 bits;  conditional E-value: 0.053
       LRR_1   2 LrhLdLsnnpllgl 15 
                 L++L+Ls+n+l gl
  KOO22092.1 885 LTSLNLSYNQLCGL 898
                 89********9544 PP

  == domain 6  score: 1.8 bits;  conditional E-value: 0.36
       LRR_1    2 LrhLdLsnnpll 13  
                  L+++dLs+n+l+
  KOO22092.1 1051 LTKIDLSGNRLG 1062
                  899******995 PP

  == domain 7  score: -1.0 bits;  conditional E-value: 2.8
       LRR_1    2 LrhLdLsnnpll 13  
                  L++L L +n l+
  KOO22092.1 1079 LTKLSLAWNKLE 1090
                  899******995 PP

  == domain 8  score: 2.7 bits;  conditional E-value: 0.18
       LRR_1    2 LrhLdLsnnpllgl 15  
                  L++LdLs+ +++g 
  KOO22092.1 1107 LKELDLSGHNNIGG 1120
                  9*****98888765 PP

  == domain 9  score: 3.4 bits;  conditional E-value: 0.11
       LRR_1    2 LrhLdLsnnpllglppnsf 20  
                  L++L++ +n++ + ++ ++
  KOO22092.1 1137 LKELNIAGNSIKDEGITAI 1155
                  9*********966665555 PP

  == domain 10  score: 0.8 bits;  conditional E-value: 0.74
       LRR_1    2 LrhLdLsnnpllgl 15  
                  L+++dLs n+l + 
  KOO22092.1 1262 LTSIDLSKNRL-CG 1274
                  89********9.43 PP

  == domain 11  score: 3.7 bits;  conditional E-value: 0.086
       LRR_1    2 LrhLdLsnnpll 13  
                  L++LdLsnn l 
  KOO22092.1 1624 LTSLDLSNNLLC 1635
                  89*******984 PP

  == domain 12  score: -1.9 bits;  conditional E-value: 5.9
       LRR_1    2 LrhLdLsn 9   
                  L++Ld+sn
  KOO22092.1 1691 LKELDISN 1698
                  9*****97 PP

  == domain 13  score: 1.2 bits;  conditional E-value: 0.55
       LRR_1    2 LrhLdLsnnpll 13  
                  L++++Ls+n+l 
  KOO22092.1 1718 LTSINLSDNQLC 1729
                  89*******994 PP

  == domain 14  score: 4.6 bits;  conditional E-value: 0.043
       LRR_1    2 LrhLdLsnnpllglppn 18  
                  L+ Ld+snn+l++ + +
  KOO22092.1 1760 LTALDVSNNCLEDEGVS 1776
                  889********887765 PP

  == domain 15  score: -1.7 bits;  conditional E-value: 4.8
       LRR_1    1 nLrhLdLsnnpll 13  
                  +L +L+ +nn ++
  KOO22092.1 1789 KLASLNFRNNDIG 1801
                  6779******984 PP

  == domain 16  score: 4.1 bits;  conditional E-value: 0.064
       LRR_1    2 LrhLdLsnnpll 13  
                  L++L+Ls+n+l 
  KOO22092.1 1818 LTSLNLSSNNLC 1829
                  99********92 PP

>> EF-hand_1  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.0   3.2e-06    0.0053       4      28 ..      31      55 ..      30      56 .. 0.94
   2 !   11.0   0.1   0.00015      0.25       6      26 ..      67      87 ..      63      90 .. 0.87
   3 ?   -1.2   0.0       1.2   1.9e+03       6      15 ..    1529    1538 ..    1527    1539 .. 0.87

  Alignments for each domain:
  == domain 1  score: 16.2 bits;  conditional E-value: 3.2e-06
                HHHHHHTTTSSSEEEHHHHHHHHHH CS
   EF-hand_1  4 eiFrefDkDgdGkIdfeEfkellkk 28
                +iF+e+D+D +  I+ +E+k++l+k
  KOO22092.1 31 RIFKEVDVDSNQSISSDELKSALQK 55
                69********************987 PP

  == domain 2  score: 11.0 bits;  conditional E-value: 0.00015
                HHHHTTTSSSEEEHHHHHHHH CS
   EF-hand_1  6 FrefDkDgdGkIdfeEfkell 26
                + e+D+D dG I f+E+++ +
  KOO22092.1 67 MGELDVDSDGCIAFDEWRKGF 87
                6799**************987 PP

  == domain 3  score: -1.2 bits;  conditional E-value: 1.2
                  HHHHTTTSSS CS
   EF-hand_1    6 FrefDkDgdG 15  
                  F e+D +g G
  KOO22092.1 1529 FTELDLNGKG 1538
                  99******99 PP

>> LRR_4  Leucine Rich repeats (2 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.5   1.6      0.58   9.4e+02       6      30 ..     429     458 ..     427     464 .. 0.76
   2 !    6.3   0.0    0.0085        14       3      36 ..     528     567 ..     526     572 .. 0.79
   3 ?    0.4   0.1      0.62     1e+03       4      38 ..     608     644 ..     607     649 .. 0.60
   4 ?   -1.7   0.0       2.7   4.4e+03       3      15 ..     668     680 ..     667     686 .. 0.80
   5 ?   -3.2   0.0       8.3   1.3e+04       3      15 ..     728     740 ..     727     743 .. 0.72
   6 ?    1.0   0.0       0.4   6.5e+02       5      33 ..     816     850 ..     814     856 .. 0.58
   7 ?    1.8   0.2      0.21   3.5e+02       3      13 ..     885     895 ..     877     899 .. 0.75
   8 ?    3.0   0.1     0.089   1.4e+02       3      18 ..    1051    1066 ..    1050    1091 .. 0.63
   9 !    8.9   0.3    0.0013       2.1       3      36 ..    1079    1118 ..    1078    1122 .. 0.78
  10 ?    2.8   0.0      0.11   1.7e+02       3      18 ..    1137    1152 ..    1135    1180 .. 0.65
  11 ?   -0.7   0.0       1.3   2.1e+03       3      13 ..    1262    1272 ..    1261    1274 .. 0.73
  12 ?    3.9   0.1     0.048        78       3      13 ..    1624    1634 ..    1623    1642 .. 0.73
  13 ?    5.4   0.0     0.016        26       2      33 ..    1662    1698 ..    1661    1703 .. 0.79
  14 ?    0.3   0.1      0.66   1.1e+03       3      13 ..    1718    1728 ..    1716    1729 .. 0.73
  15 ?    3.8   0.3     0.051        83       3      34 ..    1760    1798 ..    1759    1806 .. 0.63
  16 ?    1.8   2.8      0.22   3.5e+02      25      35 ..    1818    1828 ..    1788    1834 .. 0.58

  Alignments for each domain:
  == domain 1  score: 0.5 bits;  conditional E-value: 0.58
                 EE--SS---E-S-....HHH.-TT.--EEE- CS
       LRR_4   6 LdLsnNqltdipl....lek.lpn.LkeLdL 30 
                 +dLsn  ++  +     l   lpn L++L+L
  KOO22092.1 429 IDLSN-LIKCTDKelklLTAaLPNsLESLNL 458
                 78996.888877775544444*********9 PP

  == domain 2  score: 6.3 bits;  conditional E-value: 0.0085
                 --EEE--SS---E-S-......HHH-TT--EEE-.-S--- CS
       LRR_4   3 LevLdLsnNqltdipl......leklpnLkeLdLsgNnli 36 
                 L++L+L+++ l + +       l++++ LkeLd+sg+ +i
  KOO22092.1 528 LTKLSLASTFLGEEGTkaiceaLKQNKTLKELDMSGCDNI 567
                 9999999999998777877544446888********9555 PP

  == domain 3  score: 0.4 bits;  conditional E-value: 0.62
                 -EEE--SS---E-S-.....HHH-TT..--EEE-.-S----- CS
       LRR_4   4 evLdLsnNqltdipl.....leklpn..LkeLdLsgNnlitd 38 
                 e+LdLs+ +l   +      l  + n  L +LdLs+N    d
  KOO22092.1 608 ETLDLSGKKLGVASAvviasLI-CANggLMSLDLSHN----D 644
                 6777777777766665533322.33355667777777....4 PP

  == domain 4  score: -1.7 bits;  conditional E-value: 2.7
                 --EEE--SS---E CS
       LRR_4   3 LevLdLsnNqltd 15 
                 L+++dL++N l d
  KOO22092.1 668 LTSVDLRGNWLGD 680
                 8999999999887 PP

  == domain 5  score: -3.2 bits;  conditional E-value: 8.3
                 --EEE--SS---E CS
       LRR_4   3 LevLdLsnNqltd 15 
                 L+++ L +N+l d
  KOO22092.1 728 LTSVELKGNKLGD 740
                 7777888888876 PP

  == domain 6  score: 1.0 bits;  conditional E-value: 0.4
                 EEE--SS---E-S-.....HHH.-TT--EEE-.-S CS
       LRR_4   5 vLdLsnNqltdipl.....lek.lpnLkeLdLsgN 33 
                 +LdLs  +l   +      l + +  L+++dLsgN
  KOO22092.1 816 TLDLSVKKLGVASAvviafLIGvNGGLTSIDLSGN 850
                 56666445555555443333343445888888888 PP

  == domain 7  score: 1.8 bits;  conditional E-value: 0.21
                 --EEE--SS-- CS
       LRR_4   3 LevLdLsnNql 13 
                 L++L+Ls Nql
  KOO22092.1 885 LTSLNLSYNQL 895
                 66666666665 PP

  == domain 8  score: 3.0 bits;  conditional E-value: 0.089
                  --EEE--SS---E-S- CS
       LRR_4    3 LevLdLsnNqltdipl 18  
                  L+++dLs+N+l   + 
  KOO22092.1 1051 LTKIDLSGNRLGAEGA 1066
                  8999999999985554 PP

  == domain 9  score: 8.9 bits;  conditional E-value: 0.0013
                  --EEE--.SS---E-S-......HHH-TT--EEE-.-S--- CS
       LRR_4    3 LevLdLs.nNqltdipl......leklpnLkeLdLsgNnli 36  
                  L++L+L+ n +l + +       l++++ LkeLdLsg n+i
  KOO22092.1 1079 LTKLSLAwN-KLEEEGTkaiceaLKQNKTLKELDLSGHNNI 1118
                  899999966.9998777877544446888******997777 PP

  == domain 10  score: 2.8 bits;  conditional E-value: 0.11
                  --EEE--SS---E-S- CS
       LRR_4    3 LevLdLsnNqltdipl 18  
                  L++L++++N ++d + 
  KOO22092.1 1137 LKELNIAGNSIKDEGI 1152
                  8999999999998665 PP

  == domain 11  score: -0.7 bits;  conditional E-value: 1.3
                  --EEE--SS-- CS
       LRR_4    3 LevLdLsnNql 13  
                  L+++dLs N+l
  KOO22092.1 1262 LTSIDLSKNRL 1272
                  77777777775 PP

  == domain 12  score: 3.9 bits;  conditional E-value: 0.048
                  --EEE--SS-- CS
       LRR_4    3 LevLdLsnNql 13  
                  L++LdLsnN l
  KOO22092.1 1624 LTSLDLSNNLL 1634
                  77777777754 PP

  == domain 13  score: 5.4 bits;  conditional E-value: 0.016
                  S--EEE--SS---E-S-......HHH-TT--EEE-.-S CS
       LRR_4    2 nLevLdLsnNqltdipl......leklpnLkeLdLsgN 33  
                   L++++L+nN l + +       le+++ LkeLd+ +N
  KOO22092.1 1662 GLTKISLANNELGEEGTkaiceaLEQNKMLKELDI-SN 1698
                  59***********9888887555445666*****9.55 PP

  == domain 14  score: 0.3 bits;  conditional E-value: 0.66
                  --EEE--SS-- CS
       LRR_4    3 LevLdLsnNql 13  
                  L++++Ls+Nql
  KOO22092.1 1718 LTSINLSDNQL 1728
                  77777777776 PP

  == domain 15  score: 3.8 bits;  conditional E-value: 0.051
                  --EEE--SS---E-S-HH......H-TT..--EEE-.-S- CS
       LRR_4    3 LevLdLsnNqltdiplle......klpn..LkeLdLsgNn 34  
                  L+ Ld snN+l d +  +      +++   L +L+  +Nn
  KOO22092.1 1760 LTALDVSNNCLEDEGVSAvceaiqSNKEtkLASLNF-RNN 1798
                  999********9987733333443233344777777.444 PP

  == domain 16  score: 1.8 bits;  conditional E-value: 0.22
                  --EEE-.-S-- CS
       LRR_4   25 LkeLdLsgNnl 35  
                  L++L+Ls+Nnl
  KOO22092.1 1818 LTSLNLSSNNL 1828
                  88888877754 PP

>> LRR_8  Leucine rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.0       4.5   7.3e+03      46      58 ..     551     563 ..     548     565 .. 0.52
   2 ?    3.3   0.0     0.043        70      26      36 ..     634     645 ..     596     652 .. 0.73
   3 ?    0.4   0.0      0.34   5.6e+02      50      61 .]     841     852 ..     787     855 .. 0.70
   4 ?    4.7   0.0     0.016        26      25      40 ..     883     898 ..     871     902 .. 0.72
   5 ?    1.2   1.1      0.19   3.2e+02      27      37 ..    1079    1089 ..    1049    1118 .. 0.42
   6 ?    0.1   0.0      0.44   7.2e+02      26      38 ..    1136    1148 ..    1129    1150 .. 0.78
   7 ?   -4.2   0.0       9.3   1.5e+04       3      12 ..    1167    1176 ..    1166    1184 .. 0.56
   8 ?    0.0   0.0      0.45   7.3e+02      27      37 ..    1262    1272 ..    1258    1277 .. 0.61
   9 ?   -3.7   0.0       6.7   1.1e+04       3      14 ..    1304    1315 ..    1303    1320 .. 0.80
  10 ?   -2.7   0.0       3.1   5.1e+03      22      37 ..    1392    1407 ..    1384    1418 .. 0.63
  11 ?    3.3   0.0     0.042        68      26      37 ..    1623    1634 ..    1613    1641 .. 0.75
  12 ?   -0.9   0.0      0.89   1.5e+03      27      37 ..    1663    1673 ..    1655    1698 .. 0.60
  13 ?    0.3   0.1      0.38   6.1e+02      26      37 ..    1717    1728 ..    1712    1731 .. 0.67
  14 ?    0.0   0.0      0.45   7.4e+02      25      38 ..    1758    1771 ..    1747    1774 .. 0.79
  15 ?    4.9   0.0     0.013        22      50      61 .]    1817    1828 ..    1786    1834 .. 0.57

  Alignments for each domain:
  == domain 1  score: -3.2 bits;  conditional E-value: 4.5
                 TT--S-.EEE--S CS
       LRR_8  46 sgLpsLrsLdLsg 58 
                  + + L++Ld+sg
  KOO22092.1 551 KQNKTLKELDMSG 563
                 4444566666665 PP

  == domain 2  score: 3.3 bits;  conditional E-value: 0.043
                 T--EEE--SS.- CS
       LRR_8  26 nLkvLdLsnN.l 36 
                 +L++LdLs+N l
  KOO22092.1 634 GLMSLDLSHNdL 645
                 577777777733 PP

  == domain 3  score: 0.4 bits;  conditional E-value: 0.34
                 S-.EEE--SS-- CS
       LRR_8  50 sLrsLdLsgNrL 61 
                  L+s+dLsgN L
  KOO22092.1 841 GLTSIDLSGNEL 852
                 345555555543 PP

  == domain 4  score: 4.7 bits;  conditional E-value: 0.016
                 TT--EEE--SS---GG CS
       LRR_8  25 snLkvLdLsnNllttl 40 
                  +L++L+Ls+N+l  l
  KOO22092.1 883 GGLTSLNLSYNQLCGL 898
                 5688888888887666 PP

  == domain 5  score: 1.2 bits;  conditional E-value: 0.19
                  --EEE--SS-- CS
       LRR_8   27 LkvLdLsnNll 37  
                  L+ L+L  N+l
  KOO22092.1 1079 LTKLSLAWNKL 1089
                  33333333333 PP

  == domain 6  score: 0.1 bits;  conditional E-value: 0.44
                  T--EEE--SS--- CS
       LRR_8   26 nLkvLdLsnNllt 38  
                  +Lk+L++  N+++
  KOO22092.1 1136 GLKELNIAGNSIK 1148
                  6888888888886 PP

  == domain 7  score: -4.2 bits;  conditional E-value: 9.3
                  -SEEE-TTS- CS
       LRR_8    3 LtsLdLsnNr 12  
                  L +L++  N+
  KOO22092.1 1167 LAKLNVAGNN 1176
                  4455555554 PP

  == domain 8  score: 0.0 bits;  conditional E-value: 0.45
                  --EEE--SS-- CS
       LRR_8   27 LkvLdLsnNll 37  
                  L+++dLs N+l
  KOO22092.1 1262 LTSIDLSKNRL 1272
                  45555555544 PP

  == domain 9  score: -3.7 bits;  conditional E-value: 6.7
                  -SEEE-TTS--S CS
       LRR_8    3 LtsLdLsnNrlt 14  
                  Lt++d+++N++ 
  KOO22092.1 1304 LTRVDVRSNNIA 1315
                  888999999985 PP

  == domain 10  score: -2.7 bits;  conditional E-value: 3.1
                  TT-TT--EEE--SS-- CS
       LRR_8   22 kglsnLkvLdLsnNll 37  
                  kg   +++LdLs  +l
  KOO22092.1 1392 KGTDPVEMLDLSGKNL 1407
                  5556666777776555 PP

  == domain 11  score: 3.3 bits;  conditional E-value: 0.042
                  T--EEE--SS-- CS
       LRR_8   26 nLkvLdLsnNll 37  
                  +L++LdLsnNll
  KOO22092.1 1623 GLTSLDLSNNLL 1634
                  577777777766 PP

  == domain 12  score: -0.9 bits;  conditional E-value: 0.89
                  --EEE--SS-- CS
       LRR_8   27 LkvLdLsnNll 37  
                  L+ ++L nN+l
  KOO22092.1 1663 LTKISLANNEL 1673
                  55555555544 PP

  == domain 13  score: 0.3 bits;  conditional E-value: 0.38
                  T--EEE--SS-- CS
       LRR_8   26 nLkvLdLsnNll 37  
                  +L++++Ls+N+l
  KOO22092.1 1717 GLTSINLSDNQL 1728
                  456666666654 PP

  == domain 14  score: 0.0 bits;  conditional E-value: 0.45
                  TT--EEE--SS--- CS
       LRR_8   25 snLkvLdLsnNllt 38  
                   +L+ Ld snN+l+
  KOO22092.1 1758 GGLTALDVSNNCLE 1771
                  57889999999886 PP

  == domain 15  score: 4.9 bits;  conditional E-value: 0.013
                  S-.EEE--SS-- CS
       LRR_8   50 sLrsLdLsgNrL 61  
                  +L+sL+Ls+N+L
  KOO22092.1 1817 ALTSLNLSSNNL 1828
                  345555555554 PP

>> EF-hand_7  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.6   0.4   3.2e-08   5.1e-05       6      67 ..      31      84 ..      30      88 .. 0.88

  Alignments for each domain:
  == domain 1  score: 23.6 bits;  conditional E-value: 3.2e-08
   EF-hand_7  6 eaFkelDtdgdgyldkeellrllrkifqgagegsklsdeelellfkefDtdkdGvisfdEFl 67
                ++Fke D+d + +++ +el+++l+        g +  d    +l+ e+D d+dG+i fdE +
  KOO22092.1 31 RIFKEVDVDSNQSISSDELKSALQ------KQGYD--DVVFATLMGELDVDSDGCIAFDEWR 84
                57**********************......66666..55788*****************965 PP

>> EF-hand_6  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.9   0.0   2.4e-05     0.039       4      28 ..      31      55 ..      30      68 .. 0.90
   2 ?    4.8   0.0     0.019        31       8      25 ..      69      86 ..      63      90 .. 0.88
   3 ?   -1.6   0.0       2.2   3.7e+03       4      15 ..    1527    1538 ..    1523    1539 .. 0.83

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 2.4e-05
   EF-hand_6  4 eaFklfDkdgdGkidaeElrkalrk 28
                ++Fk+ D+d + +i+ +El++al+k
  KOO22092.1 31 RIFKEVDVDSNQSISSDELKSALQK 55
                58*********************96 PP

  == domain 2  score: 4.8 bits;  conditional E-value: 0.019
   EF-hand_6  8 lfDkdgdGkidaeElrka 25
                ++D+d dG+i ++E+rk 
  KOO22092.1 69 ELDVDSDGCIAFDEWRKG 86
                69*************985 PP

  == domain 3  score: -1.6 bits;  conditional E-value: 2.2
   EF-hand_6    4 eaFklfDkdgdG 15  
                  + F ++D +g G
  KOO22092.1 1527 DSFTELDLNGKG 1538
                  569*******99 PP

>> SpoU_sub_bind  RNA 2'-O ribose methyltransferase substrate binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.0   0.0      0.15   2.5e+02       3      21 ..     541     559 ..     541     561 .. 0.90
   2 ?    2.8   0.0     0.088   1.4e+02       3      21 ..    1092    1110 ..    1092    1125 .. 0.88
   3 ?   -2.3   0.0       3.4   5.6e+03       3      39 ..    1289    1325 ..    1288    1343 .. 0.67
   4 ?    5.3   0.1     0.015        24       3      43 ..    1648    1689 ..    1646    1696 .. 0.77
   5 ?   -0.0   0.0      0.67   1.1e+03       3      26 ..    1773    1798 ..    1745    1806 .. 0.83

  Alignments for each domain:
  == domain 1  score: 2.0 bits;  conditional E-value: 0.15
  SpoU_sub_bind   3 yGlhaVleaLksgrriekl 21 
                    +G++a+ eaLk+++ +++l
     KOO22092.1 541 EGTKAICEALKQNKTLKEL 559
                    8***********9988775 PP

  == domain 2  score: 2.8 bits;  conditional E-value: 0.088
  SpoU_sub_bind    3 yGlhaVleaLksgrriekl 21  
                     +G++a+ eaLk+++ +++l
     KOO22092.1 1092 EGTKAICEALKQNKTLKEL 1110
                     8************999887 PP

  == domain 3  score: -2.3 bits;  conditional E-value: 3.4
  SpoU_sub_bind    3 yGlhaVleaLksgrriekllvtegradkrleellkla 39  
                     +G+ a+  aL+ +  ++++ v +++ + +  e l++a
     KOO22092.1 1289 EGITAIADALRVNGALTRVDVRSNNIAGDGAEQLAAA 1325
                     8999*******99889999888884444433444444 PP

  == domain 4  score: 5.3 bits;  conditional E-value: 0.015
  SpoU_sub_bind    3 yGlhaVleaLksgrriekllvtegradkr.leellklakkrg 43  
                     +G+ a+ eaL+ +  ++k+ +++++ +++ ++ +++++++++
     KOO22092.1 1648 EGITAIAEALRVNDGLTKISLANNELGEEgTKAICEALEQNK 1689
                     899999999999988999999999666664667777776654 PP

  == domain 5  score: -0.0 bits;  conditional E-value: 0.67
  SpoU_sub_bind    3 yGlhaVleaLksgrr..iekllvteg 26  
                     +G+ aV ea++s+++  + +l + ++
     KOO22092.1 1773 EGVSAVCEAIQSNKEtkLASLNFRNN 1798
                     68889999999997767777766665 PP

>> DUF2202  Uncharacterized protein domain (DUF2202)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.1   0.0     0.097   1.6e+02      78     116 ..     538     576 ..     492     583 .. 0.73
   2 ?    4.9   0.0     0.013        21      71     114 ..    1082    1125 ..    1074    1138 .. 0.82
   3 ?    3.2   0.0     0.043        71      76     111 ..    1671    1706 ..    1660    1764 .. 0.77

  Alignments for each domain:
  == domain 1  score: 2.1 bits;  conditional E-value: 0.097
     DUF2202  78 LvekgsksledaLkvgatiedldiaDlekalketdnkdi 116
                 L e+g k + +aLk   t+ +ld++  +++ +   +k +
  KOO22092.1 538 LGEEGTKAICEALKQNKTLKELDMSGCDNIGRAAGAKHV 576
                 66899*******************999888777666655 PP

  == domain 2  score: 4.9 bits;  conditional E-value: 0.013
     DUF2202   71 lqelYnkLvekgsksledaLkvgatiedldiaDlekalketdnk 114 
                  l+  +nkL e+g k + +aLk   t+ +ld++  +++  e  +k
  KOO22092.1 1082 LSLAWNKLEEEGTKAICEALKQNKTLKELDLSGHNNIGGEAGAK 1125
                  555689************************99888776666555 PP

  == domain 3  score: 3.2 bits;  conditional E-value: 0.043
     DUF2202   76 nkLvekgsksledaLkvgatiedldiaDlekalket 111 
                  n+L e+g k + +aL+   ++ +ldi+++  +  ++
  KOO22092.1 1671 NELGEEGTKAICEALEQNKMLKELDISNIGGTAGVK 1706
                  78999**********************997665555 PP

>> UPF0181  Uncharacterised protein family (UPF0181)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.0       3.8   6.1e+03      34      44 ..     713     723 ..     710     726 .. 0.84
   2 ?   -2.7   0.0         3   4.9e+03      34      44 ..     773     783 ..     764     786 .. 0.82
   3 ?    2.7   0.0     0.062     1e+02      25      43 ..     863     881 ..     862     883 .. 0.92
   4 ?    0.1   0.0      0.38   6.2e+02      27      43 ..     904     920 ..     902     924 .. 0.87
   5 ?   -3.1   0.0       3.9   6.3e+03      34      44 ..     969     979 ..     967     982 .. 0.83
   6 ?    2.8   0.1     0.054        88      25      43 ..    1282    1300 ..    1282    1306 .. 0.90
   7 ?    0.6   0.0      0.28   4.5e+02      27      43 ..    1643    1659 ..    1641    1663 .. 0.87
   8 ?    0.1   0.0      0.39   6.3e+02      26      43 ..    1739    1756 ..    1738    1758 .. 0.87

  Alignments for each domain:
  == domain 1  score: -3.0 bits;  conditional E-value: 3.8
     UPF0181  34 IalVAqelRee 44 
                 ++l+A++lR +
  KOO22092.1 713 VKLIAEALRTS 723
                 689******86 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 3
     UPF0181  34 IalVAqelRee 44 
                 ++l+A++lR +
  KOO22092.1 773 VKLIAEALRTS 783
                 699******86 PP

  == domain 3  score: 2.7 bits;  conditional E-value: 0.062
     UPF0181  25 aqGmssgeAIalVAqelRe 43 
                 +qG  ++e I  +A++lR 
  KOO22092.1 863 QQGTYTAEGITAIADALRV 881
                 79***************95 PP

  == domain 4  score: 0.1 bits;  conditional E-value: 0.38
     UPF0181  27 GmssgeAIalVAqelRe 43 
                 G  ++e I  +A+ lR 
  KOO22092.1 904 GTYTAEGITAIADTLRV 920
                 7889************6 PP

  == domain 5  score: -3.1 bits;  conditional E-value: 3.9
     UPF0181  34 IalVAqelRee 44 
                 ++l+A++lR +
  KOO22092.1 969 VKLIAEALRTS 979
                 689******86 PP

  == domain 6  score: 2.8 bits;  conditional E-value: 0.054
     UPF0181   25 aqGmssgeAIalVAqelRe 43  
                  +qG  ++e I  +A++lR 
  KOO22092.1 1282 QQGTYTAEGITAIADALRV 1300
                  699***************6 PP

  == domain 7  score: 0.6 bits;  conditional E-value: 0.28
     UPF0181   27 GmssgeAIalVAqelRe 43  
                  G  ++e I  +A++lR 
  KOO22092.1 1643 GTYTAEGITAIAEALRV 1659
                  67799***********6 PP

  == domain 8  score: 0.1 bits;  conditional E-value: 0.39
     UPF0181   26 qGmssgeAIalVAqelRe 43  
                  +G  ++e I  +A++lR 
  KOO22092.1 1739 HGAYTAEGITAIADALRV 1756
                  67889***********95 PP

>> Parecho_VpG  Parechovirus Genome-linked protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.8   0.1      0.29   4.8e+02       7      18 ..     596     607 ..     594     609 .. 0.91
   2 ?    4.8   0.2     0.034        55       7      18 ..     803     814 ..     801     816 .. 0.91
   3 ?    4.8   0.1     0.033        54       7      18 ..    1386    1397 ..    1384    1399 .. 0.91

  Alignments for each domain:
  == domain 1  score: 1.8 bits;  conditional E-value: 0.29
  Parecho_VpG   7 LPvAKPKGtFPv 18 
                  LPv K +Gt Pv
   KOO22092.1 596 LPVKKLQGTDPV 607
                  9**********9 PP

  == domain 2  score: 4.8 bits;  conditional E-value: 0.034
  Parecho_VpG   7 LPvAKPKGtFPv 18 
                  LPv K KGt Pv
   KOO22092.1 803 LPVKKLKGTDPV 814
                  9**********9 PP

  == domain 3  score: 4.8 bits;  conditional E-value: 0.033
  Parecho_VpG    7 LPvAKPKGtFPv 18  
                   LPv K KGt Pv
   KOO22092.1 1386 LPVKKLKGTDPV 1397
                   9**********9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1928 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       409  (0.0228122); expected 358.6 (0.02)
Passed bias filter:                      316  (0.0176251); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.97u 0.28s 00:00:01.25 Elapsed: 00:00:00.47
# Mc/sec: 12377.03
//
Query:       KOO22093.1  [L=171]
Description: dutp pyrophosphatase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.4e-45  152.9   0.0      4e-45  152.6   0.0    1.0  1  dUTPase   dUTPase


Domain annotation for each model (and alignments):
>> dUTPase  dUTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  152.6   0.0   2.2e-49     4e-45       3     129 .]      16     143 ..      14     143 .. 0.99

  Alignments for each domain:
  == domain 1  score: 152.6 bits;  conditional E-value: 2.2e-49
                 CTBEBESSTT-SSEEEE-SSSEEEETTEEEEEEEEEEEE--TTEEEEEEE-HHHHHHHEEEEE.EEEETTBTSEEEEEEEE-SSS-EEE-TT-EEEEEE CS
     dUTPase   3 aeiptrkspesAgyDlsaakdltvkpgetvlvptdisiklpdglaalilpRSglaakglivvp.gvidsdyrGevkvvlfnltkkdvkikkgdRiAqLi 100
                 a+ip r++++sAgyDlsaa d+++++ ++ +v+td+si++p+g++++i+pRSgla+k++i+++ gvid+dyrG+v+vvlfn+ k+d+ +k+gdRiAqL+
  KOO22093.1  16 ATIPVRATARSAGYDLSAAHDCIIPACGKAIVKTDLSIACPEGTYGRIAPRSGLAVKNFIDTGaGVIDADYRGPVGVVLFNHAKEDFAVKRGDRIAQLV 114
                 68999********************************************************************************************** PP

                 EEEBECGEEEEESSTTTESSBTTXTTTTX CS
     dUTPase 101 fariltaeleevetlkatergeggfgssg 129
                 ++ri+t+ +   ++l+++erg ggfgs+g
  KOO22093.1 115 LERIVTPDVVVCDDLDDSERGAGGFGSTG 143
                 **************************997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (171 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       213  (0.0118802); expected 358.6 (0.02)
Passed bias filter:                      204  (0.0113782); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.23s 00:00:00.59 Elapsed: 00:00:00.38
# Mc/sec: 1364.75
//
Query:       KOO22094.1  [L=298]
Description: dienelactone hydrolase family protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
      2e-22   79.8   0.0    2.4e-22   79.5   0.0    1.1  1  DLH          Dienelactone hydrolase family
     0.0045   16.3   0.0     0.0087   15.3   0.0    1.5  1  Hydrolase_4  Serine aminopeptidase, S33
  ------ inclusion threshold ------
       0.16   10.7   0.0       0.49    9.0   0.0    1.7  2  AXE1         Acetyl xylan esterase (AXE1)


Domain annotation for each model (and alignments):
>> DLH  Dienelactone hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   79.5   0.0   4.1e-26   2.4e-22       3     216 ..      50     274 ..      48     275 .. 0.85

  Alignments for each domain:
  == domain 1  score: 79.5 bits;  conditional E-value: 4.1e-26
         DLH   3 aylatpkna.kkpvvvviqeifGvndnikdiserlaeeGYvalaPdlYarqaldpndeaeaaraldelvskvaeekvlddlkaavaylksvpevstkkv 100
                 ++   pk + +k + ++++  +G+ d  k  +e +a  GY ++a d+Y +++ + n++++a++++++  s+ ++ + l ++ a+    +    +++ k+
  KOO22094.1  50 GFWSVPKGVaPKAGLLIAHQYMGLIDYEKSRAEEFAASGYGVFALDVYGKGV-RCNTTDCAKATMNKALSDLPKLRSLINAGANQLLHEWGTGADPTKL 147
                 66778999999**************999999*********************.9****************9987776666655555555555689**** PP

         DLH 101 gvvGfCmGGalalllaaev.p......evdaavafYG.lspekeleeaakikapilalfgeeDefipade...vekleealkaanvdlelkvYpgagHa 188
                 +++G+C+GG ++l+la++         +++a+ + +G lsp  + +   +i+  i+a+++e D   +a+      +++  ++++ +  e   Y+   H+
  KOO22094.1 148 VAMGYCFGGGMVLDLARHPtRgaslglTFKAVSSIHGsLSPYDTPSSEGEIQSRIQAHHAELDFQGDAGLaklEAEMKVGVTNSDAIWETIKYSKCEHG 246
                 ****************987322333335889999999878888889999******************9962223345556678888889999******* PP

         DLH 189 Fandsresyneeaaedawervlelfkqv 216
                  +++  + yn  aa +a + ++++f+++
  KOO22094.1 247 WTEPGTPVYNGRAAVQAHKSTFNFFQEA 274
                 *************************986 PP

>> Hydrolase_4  Serine aminopeptidase, S33
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.0   1.5e-06    0.0087       3      99 ..      60     168 ..      58     181 .. 0.74

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 1.5e-06
  Hydrolase_4   3 pkavvvlvHGlaehsgryaelaeaLaaqGfavyalDhrGhGrse.gkrghvpsfddyvdDlaafvekvkeehpel...........plfllGhSmGGl 88 
                  pka ++++H +   ++  +  ae++aa G+ v+alD  G G  +    +  + +++ + Dl ++ + + +  ++l           +l+ +G   GG 
   KOO22094.1  60 PKAGLLIAHQYMGLIDYEKSRAEEFAASGYGVFALDVYGKGVRCnTTDCAKATMNKALSDLPKLRSLINAGANQLlhewgtgadptKLVAMGYCFGGG 157
                  788888888888888888889********************999755566667777777776665444433333334444446667999999999999 PP

  Hydrolase_4  89 iallyllrypd 99 
                  ++l ++ +  +
   KOO22094.1 158 MVLDLARHPTR 168
                  99998866554 PP

>> AXE1  Acetyl xylan esterase (AXE1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.0   0.0   8.2e-05      0.49      70     131 ..      49     112 ..      33     121 .. 0.73
   2 ?   -1.7   0.0      0.15     9e+02     171     190 ..     142     161 ..     139     168 .. 0.87

  Alignments for each domain:
  == domain 1  score: 9.0 bits;  conditional E-value: 8.2e-05
                 EEEEEEES.SSSSEEEEEEEE-TT--.GGGHHHHHHHHHTT-EEEEEE-TTTS....SSB-SSCC CS
        AXE1  70 kaklvlPkekeeklPavvefhGYegs.rgeihdllnyaaaGyavvvmdvRGqg..gesedkvgsk 131
                 ++ + +Pk  + k  +++  h Y+g  + e +   ++aa+Gy v+++dv G+g   +++d  + +
  KOO22094.1  49 EGFWSVPKGVAPKAGLLIA-HQYMGLiDYEKSRAEEFAASGYGVFALDVYGKGvrCNTTDCAKAT 112
                 5666778877777777775.4455554777788889****************9655666655544 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 0.15
                 EEEEEEEEEEETHHHHHHHH CS
        AXE1 171 vDeeRvavlGasqGGalala 190
                  D+++++++G   GG++ l 
  KOO22094.1 142 ADPTKLVAMGYCFGGGMVLD 161
                 5999************9875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (298 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       323  (0.0180155); expected 358.6 (0.02)
Passed bias filter:                      310  (0.0172904); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.43u 0.27s 00:00:00.70 Elapsed: 00:00:00.41
# Mc/sec: 2186.90
//
Query:       KOO22095.1  [L=1062]
Description: hypothetical protein Ctob_002557, partial [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1062 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       666  (0.0371465); expected 358.6 (0.02)
Passed bias filter:                      357  (0.0199119); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.73u 0.26s 00:00:00.99 Elapsed: 00:00:00.44
# Mc/sec: 7332.39
//
Query:       KOO22096.1  [L=1027]
Description: protein osm- isoform a [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    9.8e-81  271.2   0.1    1.5e-39  135.9   0.6    3.7  3  Kinesin      Kinesin motor domain
    2.5e-18   66.4   0.0    1.3e-17   64.1   0.0    2.1  2  Microtub_bd  Microtubule binding


Domain annotation for each model (and alignments):
>> Kinesin  Kinesin motor domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   92.2   0.0   3.2e-30   2.9e-26       1     122 [.     149     271 ..     149     278 .. 0.79
   2 !   38.0   0.0     1e-13     9e-10     177     220 ..     307     350 ..     302     363 .. 0.88
   3 !  135.9   0.6   1.7e-43   1.5e-39     222     333 .]     406     517 ..     396     517 .. 0.92

  Alignments for each domain:
  == domain 1  score: 92.2 bits;  conditional E-value: 3.2e-30
                 EE-SSSHHHHTTTTEBCEEEECTCTC..EEEEEEEEECTTSCEEEEESEEEETTS-HHHHHHHHHHHHHHHHHTTSEEEEEEEESTTSSHHHHHTBCTT CS
     Kinesin   1 RvRplnekekeeeeeeeveveeekke..eekkskkenkeeeekkfkFdkvfdeeatqeevyeetakplvesvleGynatifaYGqtgsGKTyTmegkee 97 
                 RvRp  ++ +++  +   ++ + +    +++  k  + ++  + f++d++f+++a+q +v+  + +plv+++leG+natifaYGqtgsGKT+Tm g+  
  KOO22096.1 149 RVRPSGNAHESAAVSVSGRTVTLTGGplTHHYGKPGEGKDDAQVFAYDHAFGPSADQLSVFAACGAPLVKEILEGFNATIFAYGQTGSGKTHTMLGT-A 246
                 67776655555555544444443333002333455677788899****************************************************9.8 PP

                 TSBSHHHHHHHHHHHHHHHCTTTHE CS
     Kinesin  98 eeeGiipraleelFesikkekeeke 122
                  e+G++pr+   lFe+++++++++ 
  KOO22096.1 247 LEPGLVPRSAYFLFERLQAMRARDA 271
                 99****************9988744 PP

  == domain 2  score: 38.0 bits;  conditional E-value: 1e-13
                 SHHHHHHHHHHHHHHHTSTTSSCTSHHCCSEEEEEEEEEEEETT CS
     Kinesin 177 saeevlellekgeknrkvaetklneeSSRSHavftitleqknlk 220
                 +a +v++l+++g+ +r++a+tk+n++SSRSHavft+ leq+   
  KOO22096.1 307 EAADVIDLISRGNGQRATAATKMNAASSRSHAVFTLVLEQQVPV 350
                 67899**********************************98644 PP

  == domain 3  score: 135.9 bits;  conditional E-value: 1.7e-43
                 TTCEEEEEEEEEEEEEEECCCHHHHSS.TCHHHHHHHHHHHHHHHHHHHHHHHHHHTCCTSTSCGGGSHHHHHTGGGHSSSSEEEEEEEE-TBGGGHHH CS
     Kinesin 222 eteekvkisklnLvDLAGsErasktga.aegerlkEaaniNkSLlaLgrvisaLaekkkskhipYRdSkLTrlLqdsLgGnsktlmivtvspssenlee 319
                 + + ++ +sklnLvDLAGsEra+ +ga ++++++ E  +iNkSL aLg+vi+aL+   +++h+pYR+SkLT+lL++sLgGn++t+mi  vsp+s++++e
  KOO22096.1 406 RRSMRTLRSKLNLVDLAGSERAKLSGAdEDKKMMSECVAINKSLAALGNVIAALSGG-RATHVPYRESKLTQLLEESLGGNAQTVMINAVSPHSSHYAE 503
                 33345889*****************997788999**********************9.***************************************** PP

                 HHHHHHHHHHHCTT CS
     Kinesin 320 tlstlkfaerakei 333
                 tlstl++a+ra++i
  KOO22096.1 504 TLSTLQWAKRAQSI 517
                 ***********987 PP

>> Microtub_bd  Microtubule binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.1   0.0   1.4e-21   1.3e-17      20     125 ..     142     267 ..     140     276 .. 0.87
   2 ?   -1.6   0.2      0.25   2.3e+03       3      23 ..     585     605 ..     583     649 .. 0.75

  Alignments for each domain:
  == domain 1  score: 64.1 bits;  conditional E-value: 1.4e-21
                  TB-EEEEEEECCCS-.T.EEEETT..T...................TTTEEEE-SEEEECTTHCCCCCCCC.HHHHHHHHTT--EEEEEEES...... CS
  Microtub_bd  20 GniRvfarvrpeles.ekakikfp..e................eekkkkkefsFdrvfeseseqeevfeei.sqlvqsaldgynvcifaygqTGsGKt 97 
                   ++Rv +rvrp+ +  e+a+++++  +                e k+ ++ f +d+ f +++ q +vf  + + lv+  l+g n +ifaygqTGsGKt
   KOO22096.1 142 SSVRVAVRVRPSGNAhESAAVSVSgrTvtltggplthhygkpgEGKDDAQVFAYDHAFGPSADQLSVFAACgAPLVKEILEGFNATIFAYGQTGSGKT 239
                  579*********99966677777754155667777888999998899**********************99456************************ PP

                  ..........ST-HCHHHHHHHHHHCCT CS
  Microtub_bd  98 yTmegeeeeagmipraveeifetiselk 125
                  +Tm g+  e+g +pr+   +fe ++  +
   KOO22096.1 240 HTMLGTALEPGLVPRSAYFLFERLQAMR 267
                  ********************99988764 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 0.25
                  HHHHHHHHCHHHHHHHCTB-E CS
  Microtub_bd   3 keetlRrkleNtiqelkGniR 23 
                  ++++ R++l+ +++e++   R
   KOO22096.1 585 EAKAARKQLKQQVEEVRRAAR 605
                  667889999999999987666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1027 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      3461  (0.193039); expected 358.6 (0.02)
Passed bias filter:                      680  (0.0379274); expected 358.6 (0.02)
Passed Vit filter:                       230  (0.0128284); expected 17.9 (0.001)
Passed Fwd filter:                        77  (0.00429472); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 2.31u 0.40s 00:00:02.71 Elapsed: 00:00:00.62
# Mc/sec: 4958.02
//
Query:       KOO22097.1  [L=725]
Description: hypothetical protein Ctob_002558, partial [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (725 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       319  (0.0177924); expected 358.6 (0.02)
Passed bias filter:                      254  (0.014167); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.56u 0.25s 00:00:00.81 Elapsed: 00:00:00.42
# Mc/sec: 5241.63
//
Query:       KOO22098.1  [L=308]
Description: hypothetical protein Ctob_000989 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.6e-26   91.7   0.1    5.6e-19   68.8   0.1    2.0  2  SURF4     SURF4 family
  ------ inclusion threshold ------
      0.056   14.0   1.5      0.056   14.0   1.5    2.7  3  DoxX      DoxX
        3.1    7.4   5.9        0.3   10.7   1.0    1.8  2  Wzy_C     O-Antigen ligase


Domain annotation for each model (and alignments):
>> SURF4  SURF4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   68.8   0.1   9.4e-23   5.6e-19      16     223 ..      15     232 ..       5     244 .. 0.84
   2 !   20.9   0.0   3.6e-08   0.00022     233     263 ..     261     291 ..     252     293 .. 0.91

  Alignments for each domain:
  == domain 1  score: 68.8 bits;  conditional E-value: 9.4e-23
       SURF4  16 rktkkylPtlarlllvatfleDglrllfqwsdqveyldkskklgyflatllvlvvllglligsllvvl..rkkvayavgvLlfivilqaiaYslltdlk 112
                 ++t + l  l+r l+v tf++D +r+ ++++ q + +++  ++g   +++l  +    + ig+ lv++   + v++ + vL++  ++  ++Y+   +++
  KOO22098.1  15 KRTWRPLQALSRALIVGTFVDDFVRIASDYTGQADSMRTV-GFGEPASSILPALFCAVQGIGAGLVLSgqARFVQIGCVVLISWSAAHPFLYQQQRNTE 112
                 566667889****************************875.777788888877777788899999997224579999********************** PP

       SURF4 113 lllrnlsvigglllllaesliekkslfaglPeleeeekaksylllagrvllvlm...fisl....lafe..lsftrvlltiigvaliilvviGfktkla 202
                 +++  +s+iggll+ll+ ++   +s    + + ee++ +++ l+lagr +l +    f +l    ++ +  + +t++ l ++   l + +viG +++  
  KOO22098.1 113 FVVEEVSIIGGLLILLSSTRATLRSSALPVVSQEERQTETDRLQLAGRCCLKMArerFAALndgfTHENlpATMTEIALLVMLLPLTAWLVIGLRSRWC 211
                 *******************9999987666666677789999**********98633344432221555577789999999999999************* PP

       SURF4 203 alvLvllLfvlnlvlnafWti 223
                 a++L+++  ++ l+   ++ +
  KOO22098.1 212 AFILAVVTLFAALYSHPWYVV 232
                 ******999999998888765 PP

  == domain 2  score: 20.9 bits;  conditional E-value: 3.6e-08
       SURF4 233 lkYdffqtlsviGGLLlvvatGpGelsvDek 263
                  +Y ffq  s  G LL +v  GpG+ls+De 
  KOO22098.1 261 QRYFFFQQWSTAGALLQLVVFGPGRLSLDEA 291
                 59***************************95 PP

>> DoxX  DoxX
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.2   0.5     0.045   2.7e+02       4      72 ..      24      91 ..      21     101 .. 0.65
   2 ?   -4.0   0.7         3   1.8e+04      53      61 ..     120     128 ..     118     129 .. 0.80
   3 ?   14.0   1.5   9.3e-06     0.056      46      84 ..     189     227 ..     158     228 .. 0.79

  Alignments for each domain:
  == domain 1  score: 2.2 bits;  conditional E-value: 0.045
        DoxX  4 llRlllgvlfiahGlqkltgfglegtaaslaalglpp..pellaylaalvElvgglllllGlltRlaAlal 72
                l R l+ ++f+   +      +++g a s+  +g+ +    +l  l  +v+ +g+ l+l G  +R++ ++ 
  KOO22098.1 24 LSRALIVGTFVDDFVRIAS--DYTGQADSMRTVGFGEpaSSILPALFCAVQGIGAGLVLSG-QARFVQIGC 91
                6688888888888888888..9999999999777766114555556666665555555544.555555554 PP

  == domain 2  score: -4.0 bits;  conditional E-value: 3
        DoxX  53 lvgglllll 61 
                 ++ggll+ll
  KOO22098.1 120 IIGGLLILL 128
                 789999987 PP

  == domain 3  score: 14.0 bits;  conditional E-value: 9.3e-06
        DoxX  46 ylaalvElvgglllllGlltRlaAlalavtllvatltvh 84 
                 ++  ++ l +   l++Gl  R++A++lav++l+a+l  h
  KOO22098.1 189 IALLVMLLPLTAWLVIGLRSRWCAFILAVVTLFAALYSH 227
                 55555556667789*********************9877 PP

>> Wzy_C  O-Antigen ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.3      0.44   2.6e+03       3       3 ..     119     119 ..      74     146 .. 0.59
   2 ?   10.7   1.0     5e-05       0.3      11      58 ..     183     225 ..     181     291 .. 0.74

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 0.44
       Wzy_C   3 l 3  
                 +
  KOO22098.1 119 S 119
                 2 PP

  == domain 2  score: 10.7 bits;  conditional E-value: 5e-05
       Wzy_C  11 flstsRsgiigllvalivlliifykrripfllllgilvgvilliilfv 58 
                  ++ +  +++++l++l ++l+i+++ r+      +++++v++l++ ++
  KOO22098.1 183 PATMTEIALLVMLLPLTAWLVIGLRSRW-----CAFILAVVTLFAALY 225
                 6788899999999999999999999999.....444444555555544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (308 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       568  (0.0316805); expected 358.6 (0.02)
Passed bias filter:                      345  (0.0192426); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.41u 0.28s 00:00:00.69 Elapsed: 00:00:00.40
# Mc/sec: 2314.68
//
Query:       KOO22099.1  [L=219]
Description: glutathione s-transferase-like protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.4e-10   39.6   0.0    6.2e-10   39.2   0.0    1.2  1  GST_C_3   Glutathione S-transferase, C-terminal domain
      0.001   19.0   0.0     0.0026   17.8   0.0    1.7  1  GST_C_2   Glutathione S-transferase, C-terminal domain
     0.0037   17.4   0.0     0.0057   16.8   0.0    1.3  1  GST_C     Glutathione S-transferase, C-terminal domain


Domain annotation for each model (and alignments):
>> GST_C_3  Glutathione S-transferase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.2   0.0     1e-13   6.2e-10      13      97 ..     125     215 ..     107     217 .. 0.80

  Alignments for each domain:
  == domain 1  score: 39.2 bits;  conditional E-value: 1e-13
                 SHCHHHHHHHHH.HHHHHHCHHHHHHHHHHCHGTSSSSTTS--HHHHHHHHHHHHHHHH.......TCCCC-HHHHHHHHHHHTSHHHHHHHC CS
     GST_C_3  13 dqkeeaekkkef.leerlpkflkyfekvlkkkgggylvgdklTyADlalfqvldgleea.......ealkkfpklkalyervearpkikaYle 97 
                 d +e++++++e+     + + ++++e  ++ +++g++ g+ lT+ADl+l+ v+d++          + ++ +pkl a++++v++ p + aY++
  KOO22099.1 125 DPDEKKKAREEYsQSGFMFRAMSALEARYD-DASGFCTGS-LTIADLVLYGVVDMVLTGnfdyvppSYMDGYPKLLAMHAAVKSDPLVVAYFA 215
                 333333444444155678899999999999.99******6.****************9999998755559*********************97 PP

>> GST_C_2  Glutathione S-transferase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.8   0.0   4.3e-07    0.0026      11      66 ..     142     200 ..     128     203 .. 0.81

  Alignments for each domain:
  == domain 1  score: 17.8 bits;  conditional E-value: 4.3e-07
                 CCHCHHHCTTT---SS.CTTCS--HHHHHHHHHHHHH.....HHHHHS----TT-HHHHHH CS
     GST_C_2  11 ldaaldaleahLadspflfGdqptlaDialapflvrl.....raagpgfdireaypnlraW 66 
                 +++a++alea+  d + ++ + +t+aD +l++++  +     ++++p    +++yp+l a 
  KOO22099.1 142 MFRAMSALEARYDDASGFCTGSLTIADLVLYGVVDMVltgnfDYVPP--SYMDGYPKLLAM 200
                 57899***************************888774443344444..568999999875 PP

>> GST_C  Glutathione S-transferase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   0.0   9.5e-07    0.0057      18      84 ..     129     199 ..     104     208 .. 0.75

  Alignments for each domain:
  == domain 1  score: 16.8 bits;  conditional E-value: 9.5e-07
                 HHHHHHHHHHHHHHHHHHHHHHHHHHTSSSSSTTSSCHHHHHHHHHHHHHHHHTTTTT....TTTSHHHHH CS
       GST_C  18 ekkeelvdealekvaevlsaleeelkkqdylvGdkltlADialvpilnwlqrlglafg....qekfpnlka 84 
                 +kk+ +   ++  ++++ sale+++ +   +++  lt+AD++l+ +++++ + +++ +     +++p+l a
  KOO22099.1 129 KKKAREEYSQSGFMFRAMSALEARYDDASGFCTGSLTIADLVLYGVVDMVLTGNFDYVppsyMDGYPKLLA 199
                 444444455566689999******************************99876666666688888888865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (219 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       251  (0.0139997); expected 358.6 (0.02)
Passed bias filter:                      242  (0.0134977); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.40u 0.25s 00:00:00.65 Elapsed: 00:00:00.41
# Mc/sec: 1600.00
//
Query:       KOO22100.1  [L=346]
Description: serine-type d-ala-d-ala carboxypeptidase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.3e-21   75.9   5.0    9.6e-21   74.4   5.0    1.6  1  Beta-lactamase  Beta-lactamase


Domain annotation for each model (and alignments):
>> Beta-lactamase  Beta-lactamase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   74.4   5.0   5.3e-25   9.6e-21      58     315 ..       1     301 [.       1     309 [. 0.79

  Alignments for each domain:
  == domain 1  score: 74.4 bits;  conditional E-value: 5.3e-25
                     HHHHHHHHHHHHTTSSCTTSBGGGTST............TCTTGGGTTEBHHHHHTTHSSCSSSSTSTTCTSHHHTH........HHHHHHHHHS CS
  Beta-lactamase  58 tftaaavlqlveeGkldLddpVskylP............efagpgkgkiTlrdLltHtsGlpdlfasdlleeaaada........aellralatl 132
                     +ftaaa+lql+++Gkl + d V+  +              + g+g +k+T+++Ll +tsG+ d+ +  +++ ++           + l+ ++  l
      KOO22100.1   1 MFTAAAILQLIDAGKLAYADSVTSRVDafleavngtkleTLLGEGIRKVTIAQLLHMTSGIGDY-DGTKYTVDQFANfahdfspiEILRGYVPPL 94 
                     69********************88888888899999999999*******************999.55555555544469*****99999999999 PP

                     BSSSSTTSCEE-SHHHHHHHHHHHHHHH....T.SHHHHHHHHHTTTTTTSTTEESSTTGGGGGGBEEEEEEETCEEECSCETTHHHHC...... CS
  Beta-lactamase 133 ppkyapGtkwgYsntgygllgellekvt....g.rsleqllreeilrpLgmkdtelgppesgdprdaagytgngpearappanlpaeae...... 216
                      p  +pGt + Y+ t+y llg++l++ +    g  s++ + ++    p  +k   l      d+ + ++y ++++++  + + ++++ +      
      KOO22100.1  95 SPYAKPGTSQHYCSTNYILLGMVLAAQAwaegGpASWQAYDQKASVLPASLKRDLLVGSTFVDAGRCSAY-TPVHGFLQSYVGVQPPIAsqdvwn 188
                     *******************************877888888888888887888888888888888888888.67777777777777777788999* PP

                     .......TTTBEEEEHHHHHHHH.HHHHHCCSSSSHHHHHHHHHHHTSEEEEC.TTEEEECECSSEEEEECCHTEEEEEEE.....STEEEEEEE CS
  Beta-lactamase 217 .......gagglistardlarfl.glalegglllsaetlaqltaklssgttrp.agiraglglGwvladktgapgtfghtG.....ggygtyvfv 297
                            +ag+ i+ + d+arf  +l + g +l+sa++++q++     gt ++ + +  ++ l+w ++  +g + ++gh G        +t++  
      KOO22100.1 189 vscvggwTAGNFIGPVGDVARFThELYRPGSQLVSAAAQQQMRNFSAPGTSSGhFYGMGTFDLDWSIGAVDGTGAAYGHVGdtygyQSQSTFFHG 283
                     ***********************85555555555555555554444444444303444444899999999999*********9544444455555 PP

                     ECGGTEEEEEEESBCSSH CS
  Beta-lactamase 298 dpeanlvvavltnrdppn 315
                        ++ ++av tn +++ 
      KOO22100.1 284 LGPSGSALAVATNVETSS 301
                     555699999999988764 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (346 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       255  (0.0142228); expected 358.6 (0.02)
Passed bias filter:                      220  (0.0122706); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.28s 00:00:00.74 Elapsed: 00:00:00.43
# Mc/sec: 2397.19
//
Query:       KOO22101.1  [L=220]
Description: hypothetical protein Ctob_000982 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
     0.0049   17.2   0.4       0.01   16.2   0.4    1.5  1  IL32      Interleukin 32
     0.0089   16.3   1.6     0.0089   16.3   1.6    1.8  2  PBP_N     Penicillin-binding protein N-terminus
  ------ inclusion threshold ------
      0.084   13.0   0.5       0.22   11.6   0.1    1.7  2  MCU       Mitochondrial calcium uniporter


Domain annotation for each model (and alignments):
>> IL32  Interleukin 32
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.4   1.7e-06      0.01      23      77 ..     119     174 ..     108     181 .. 0.86

  Alignments for each domain:
  == domain 1  score: 16.2 bits;  conditional E-value: 1.7e-06
        IL32  23 vsvedlevqepeesiwdkvlrrfqallrsLqqklrdvl.aWlkekaaacleAlvsa 77 
                   ++++  + p+esi ++v ++ q+   sL   +++v+ +Wl  + a +l+Al  a
  KOO22101.1 119 SAANSPRRRPPRESIRAEVAQMAQQQRASLSSAWWRVIaTWLLTVGAIALHALLAA 174
                 4566788899*********************999999836************9876 PP

>> PBP_N  Penicillin-binding protein N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.1      0.84     5e+03      82     101 ..      13      33 ..       8      46 .. 0.58
   2 !   16.3   1.6   1.5e-06    0.0089      20     102 ..      94     168 ..      83     207 .. 0.77

  Alignments for each domain:
  == domain 1  score: -2.3 bits;  conditional E-value: 0.84
       PBP_N  82 grwv.wgtllvvvllavlsva 101
                 g w+ +g+l v  +++v+s a
  KOO22101.1  13 GAWLaFGALGVLSIVTVASLA 33 
                 555424455555555555544 PP

  == domain 2  score: 16.3 bits;  conditional E-value: 1.5e-06
       PBP_N  20 pakpgpasesdsvsqdpwapqgpdpfrlssdaatpepprepepeepfradlkhaaakkkarkgrwvwgtllvvvllavlsvas 102
                 pa p+p+s+  s +       +   f  s  +++ + pr+ +p e +ra++ + a +++a      w+ ++ + ll+v ++a 
  KOO22101.1  94 PAPPSPTSSDRSFT-------TDRSFTTSERSSAANSPRRRPPRESIRAEVAQMAQQQRA-SLSSAWWRVIATWLLTVGAIAL 168
                 44555533333333.......345677788888899999************998877755.4667899999999999988774 PP

>> MCU  Mitochondrial calcium uniporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.0      0.26   1.6e+03      58      95 ..      49      86 ..      18      93 .. 0.59
   2 ?   11.6   0.1   3.7e-05      0.22      60     115 ..     127     182 ..     101     182 .. 0.85

  Alignments for each domain:
  == domain 1  score: -0.9 bits;  conditional E-value: 0.26
                HHHHHHHHHHHH-SHHHHHHHHTCCCGGGCHHHHGGGH CS
         MCU 58 eleekleelreelepleekkeeidekAerrtrrllwag 95
                + +  le+ +++ ++lee  + ++++Ae   +r+ +a+
  KOO22101.1 49 RWSLLLEKYSKQQRSLEEGSSGLAAAAEPLLQRINYAA 86
                33334455555666666666666666666655555555 PP

  == domain 2  score: 11.6 bits;  conditional E-value: 3.7e-05
                 HHHHHHHHHH-SHHHHHHHHTCCCGGGCHHHHGGGHHHHHHHHTHHHHHHHTTTS- CS
         MCU  60 eekleelreelepleekkeeidekAerrtrrllwagLallavqlgilarLTwweys 115
                 +   e++r+e+ ++ ++++   ++A +r+ + + ++ +++a+   + arL w +++
  KOO22101.1 127 RPPRESIRAEVAQMAQQQRASLSSAWWRVIATWLLTVGAIALHALLAARLGWLDLD 182
                 5567899*********9999999999999999*********************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (220 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       795  (0.0443416); expected 358.6 (0.02)
Passed bias filter:                      420  (0.0234257); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.42u 0.27s 00:00:00.69 Elapsed: 00:00:00.41
# Mc/sec: 1600.21
//
Query:       KOO22102.1  [L=173]
Description: hypothetical protein Ctob_000981 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (173 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       227  (0.0126611); expected 358.6 (0.02)
Passed bias filter:                      152  (0.00847788); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.27s 00:00:00.64 Elapsed: 00:00:00.41
# Mc/sec: 1274.21
//
Query:       KOO22103.1  [L=103]
Description: hypothetical protein Ctob_000980, partial [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.9e-16   58.6   2.3    1.8e-05   24.4   0.0    3.5  4  LRR_6     Leucine Rich repeat
  ------ inclusion threshold ------
      0.081   13.3   4.6        8.2    6.9   0.1    2.9  3  HOASN     Haem-oxygenase-associated N-terminal helices
       0.18   11.6   0.0         28    4.6   0.0    2.5  3  YycC      YycC-like protein
       0.69   10.2   3.6         40    4.5   0.1    3.0  3  SpoVAB    Stage V sporulation protein AB


Domain annotation for each model (and alignments):
>> LRR_6  Leucine Rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.2       2.1   9.6e+03      19      24 .]       1       6 [.       1       6 [. 0.88
   2 !   23.2   0.0   9.8e-09   4.4e-05       2      24 .]      12      34 ..      11      34 .. 0.91
   3 !   24.4   0.0   4.1e-09   1.8e-05       2      24 .]      40      62 ..      39      62 .. 0.93
   4 !    9.5   0.0   0.00024       1.1       2      19 ..      68      85 ..      67      89 .. 0.89

  Alignments for each domain:
  == domain 1  score: -2.8 bits;  conditional E-value: 2.1
       LRR_6 19 GaeaLa 24
                Ga+a+a
  KOO22103.1  1 GAIAIA 6 
                899997 PP

  == domain 2  score: 23.2 bits;  conditional E-value: 9.8e-09
       LRR_6  2 nthLteLdLsgNdIgDeGaeaLa 24
                n  +t+L L++N+Ig eGa+a+a
  KOO22103.1 12 NAVVTTLRLNDNNIGPEGAIAIA 34
                55689****************98 PP

  == domain 3  score: 24.4 bits;  conditional E-value: 4.1e-09
       LRR_6  2 nthLteLdLsgNdIgDeGaeaLa 24
                n  LteL+L+ N Ig eGa+a+a
  KOO22103.1 40 NAVLTELNLRLNSIGPEGAIAIA 62
                677******************98 PP

  == domain 4  score: 9.5 bits;  conditional E-value: 0.00024
       LRR_6  2 nthLteLdLsgNdIgDeG 19
                n  Lt+Ld++ N +gD+G
  KOO22103.1 68 NAVLTKLDIRINRMGDAG 85
                677*************99 PP

>> HOASN  Haem-oxygenase-associated N-terminal helices
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.8   0.1     0.069   3.1e+02      21      35 ..       4      18 ..       1      26 [. 0.76
   2 ?    6.7   0.1    0.0021       9.5      13      42 ..      24      53 ..      16      55 .. 0.81
   3 ?    6.9   0.1    0.0018       8.2      17      42 ..      56      81 ..      49      95 .. 0.78

  Alignments for each domain:
  == domain 1  score: 1.8 bits;  conditional E-value: 0.069
                HHHHHTSTT--HHHH CS
       HOASN 21 lladalkvgasldqi 35
                 +a+alkv+a +  +
  KOO22103.1  4 AIAEALKVNAVVTTL 18
                589******987665 PP

  == domain 2  score: 6.7 bits;  conditional E-value: 0.0021
                T--SHHHHHHHHHTSTT--HHHHHHHHHHH CS
       HOASN 13 nlpieeaalladalkvgasldqidlalekl 42
                n+  e a  +a+alkv+a l  ++l l+ +
  KOO22103.1 24 NIGPEGAIAIAEALKVNAVLTELNLRLNSI 53
                5666778889**********9999887765 PP

  == domain 3  score: 6.9 bits;  conditional E-value: 0.0018
                HHHHHHHHHTSTT--HHHHHHHHHHH CS
       HOASN 17 eeaalladalkvgasldqidlalekl 42
                e a  +a+alkv+a l ++d  ++++
  KOO22103.1 56 EGAIAIAEALKVNAVLTKLDIRINRM 81
                556779***********999887765 PP

>> YycC  YycC-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.0       1.9   8.3e+03      11      20 ..       2      11 ..       2      11 .. 0.81
   2 ?    4.4   0.0    0.0071        32       4      20 ..      23      39 ..      21      41 .. 0.91
   3 ?    4.6   0.0    0.0063        28       4      20 ..      51      67 ..      48      69 .. 0.89

  Alignments for each domain:
  == domain 1  score: -3.3 bits;  conditional E-value: 1.9
        YycC 11 AvkLskkLnv 20
                A+ ++++L+v
  KOO22103.1  2 AIAIAEALKV 11
                7788999987 PP

  == domain 2  score: 4.4 bits;  conditional E-value: 0.0071
        YycC  4 lQiSpeTAvkLskkLnv 20
                + i pe A+ ++++L+v
  KOO22103.1 23 NNIGPEGAIAIAEALKV 39
                5799***********98 PP

  == domain 3  score: 4.6 bits;  conditional E-value: 0.0063
        YycC  4 lQiSpeTAvkLskkLnv 20
                + i pe A+ ++++L+v
  KOO22103.1 51 NSIGPEGAIAIAEALKV 67
                6799***********98 PP

>> SpoVAB  Stage V sporulation protein AB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.2   0.1     0.047   2.1e+02      66      80 ..       2      16 ..       1      22 [. 0.86
   2 ?    3.3   0.1     0.022        99      66      80 ..      30      44 ..      28      52 .. 0.88
   3 ?    4.5   0.1     0.009        40      66      81 ..      58      73 ..      57      81 .. 0.87

  Alignments for each domain:
  == domain 1  score: 2.2 bits;  conditional E-value: 0.047
      SpoVAB 66 alaLaEvlnvlpila 80
                a+a+aE l+v ++++
  KOO22103.1  2 AIAIAEALKVNAVVT 16
                79********99875 PP

  == domain 2  score: 3.3 bits;  conditional E-value: 0.022
      SpoVAB 66 alaLaEvlnvlpila 80
                a+a+aE l+v ++l+
  KOO22103.1 30 AIAIAEALKVNAVLT 44
                79********99986 PP

  == domain 3  score: 4.5 bits;  conditional E-value: 0.009
      SpoVAB 66 alaLaEvlnvlpilar 81
                a+a+aE l+v ++l++
  KOO22103.1 58 AIAIAEALKVNAVLTK 73
                79***********987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (103 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       344  (0.0191868); expected 358.6 (0.02)
Passed bias filter:                      275  (0.0153383); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.35u 0.24s 00:00:00.59 Elapsed: 00:00:00.38
# Mc/sec: 810.13
//
Query:       KOO22104.1  [L=930]
Description: hypothetical protein Ctob_000987 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (930 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1067  (0.0595125); expected 358.6 (0.02)
Passed bias filter:                      566  (0.031569); expected 358.6 (0.02)
Passed Vit filter:                        68  (0.00379274); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.75u 0.31s 00:00:01.06 Elapsed: 00:00:00.41
# Mc/sec: 6848.44
//
Query:       KOO22105.1  [L=1780]
Description: hypothetical protein Ctob_000986, partial [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1780 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       843  (0.0470188); expected 358.6 (0.02)
Passed bias filter:                      323  (0.0180155); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.95u 0.30s 00:00:01.25 Elapsed: 00:00:00.47
# Mc/sec: 11399.92
//
Query:       KOO22106.1  [L=436]
Description: hypothetical protein Ctob_000985 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.3e-08   34.3  14.2    3.7e-08   33.6  14.2    1.4  1  zf-RING_2     Ring finger domain
    1.9e-07   30.8   8.9    2.9e-07   30.2   8.9    1.3  1  zf-C3HC4_3    Zinc finger, C3HC4 type (RING finger)
    3.2e-07   30.2  11.7    5.9e-07   29.4  11.7    1.4  1  zf-RING_UBOX  RING-type zinc-finger
      1e-06   28.9   8.8    1.8e-06   28.1   8.8    1.4  1  zf-rbx1       RING-H2 zinc finger domain
    1.5e-06   28.0  14.5    2.4e-06   27.3  14.5    1.3  1  zf-C3HC4      Zinc finger, C3HC4 type (RING finger)
    5.8e-06   26.4  13.9      1e-05   25.6  13.9    1.4  1  zf-C3HC4_4    zinc finger of C3HC4-type, RING
    2.1e-05   24.2  13.0    3.8e-05   23.4  13.0    1.4  1  zf-C3HC4_2    Zinc finger, C3HC4 type (RING finger)
    0.00041   20.2  11.9    0.00078   19.3  11.9    1.4  1  Prok-RING_4   Prokaryotic RING finger family 4
    0.00082   19.3  12.0     0.0014   18.6  12.0    1.4  1  zf-RING_5     zinc-RING finger domain
     0.0048   16.9   3.1      0.011   15.8   3.1    1.6  1  zf-ANAPC11    Anaphase-promoting complex subunit 11 RING-H2 f
  ------ inclusion threshold ------
       0.65    9.9   5.9        1.1    9.2   5.9    1.3  1  zf-Nse        Zinc-finger of the MIZ type in Nse subunit
          1    9.0  10.1          2    8.1  10.1    1.4  1  Zn_ribbon_17  Zinc-ribbon, C4HC2 type
        1.8    8.5   6.6        4.5    7.2   6.6    1.6  1  zf-RING_6     zf-RING of BARD1-type protein
        2.8    7.8   7.6        7.7    6.4   7.6    1.8  1  zf-RING_11    RING-like zinc finger
        2.9    7.6   9.1        3.7    7.3   4.6    2.8  3  zf-P11        P-11 zinc finger


Domain annotation for each model (and alignments):
>> zf-RING_2  Ring finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.6  14.2   3.1e-11   3.7e-08       3      44 .]     372     413 ..     370     413 .. 0.80

  Alignments for each domain:
  == domain 1  score: 33.6 bits;  conditional E-value: 3.1e-11
   zf-RING_2   3 CpICleelssadsvlllpCgHvfhreClerwlrssst..CPlCr 44 
                 C+IC+ee   +  v+l +C+Hvf+++C++ w++++s+  CPlCr
  KOO22106.1 372 CTICQEEH-FTVPVRL-ECSHVFCEDCITSWCERTSNptCPLCR 413
                 ****8555.3344444.5*************99998899****9 PP

>> zf-C3HC4_3  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.2   8.9   2.4e-10   2.9e-07       3      48 ..     370     417 ..     368     419 .. 0.88

  Alignments for each domain:
  == domain 1  score: 30.2 bits;  conditional E-value: 2.4e-10
                 SB-TTTSSSBS-.EEETTEEEEEE-HHHHHHHHH..TT-B-TTT--B-- CS
  zf-C3HC4_3   3 eeCviClerprn.vvllpCgHlvlCeeCaekllk..rkkkCpiCrrpie 48 
                 + C iC+e+  +  v l+C H+ +Ce+C +++ +  ++++Cp+Cr+p+ 
  KOO22106.1 370 DGCTICQEEHFTvPVRLECSHV-FCEDCITSWCErtSNPTCPLCRAPVP 417
                 56******966526999*****.*********9999**********985 PP

>> zf-RING_UBOX  RING-type zinc-finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.4  11.7   4.9e-10   5.9e-07       1      39 []     372     410 ..     372     410 .. 0.91

  Alignments for each domain:
  == domain 1  score: 29.4 bits;  conditional E-value: 4.9e-10
  zf-RING_UBOX   1 CpICl.elftdPlv.lpCGHtFCreClwelskslegafkCP 39 
                   C+IC+ e ft P v l+C+H+FC++C+ +++  +  + +CP
    KOO22106.1 372 CTICQeEHFTVP-VrLECSHVFCEDCI-TSWCERTSNPTCP 410
                   *****77*****.758***********.7889999999998 PP

>> zf-rbx1  RING-H2 zinc finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.1   8.8   1.5e-09   1.8e-06      12      55 .]     370     413 ..     365     413 .. 0.92

  Alignments for each domain:
  == domain 1  score: 28.1 bits;  conditional E-value: 1.5e-09
     zf-rbx1  12 eacieckapgdeecpvvlGeCgHaFHlhCiskWlkt..rkvCPlcr 55 
                 + c+ c++++ + +pv l eC+H+F  +Ci++W ++  + +CPlcr
  KOO22106.1 370 DGCTICQEEHFT-VPVRL-ECSHVFCEDCITSWCERtsNPTCPLCR 413
                 56999*999999.99988.****************999999****8 PP

>> zf-C3HC4  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.3  14.5     2e-09   2.4e-06       1      41 []     372     412 ..     372     412 .. 0.87

  Alignments for each domain:
  == domain 1  score: 27.3 bits;  conditional E-value: 2e-09
                 -TTT-S-.-SS-E.E-TTS--B-CHHHHHHHHCTSSB--TTT CS
    zf-C3HC4   1 CpiClee.akepnelleCkHsfCskCirkilksrkkvkCPlC 41 
                 C iC+ee ++ p+  leC H fC++Ci+++ +  ++ +CPlC
  KOO22106.1 372 CTICQEEhFTVPV-RLECSHVFCEDCITSWCERTSNPTCPLC 412
                 ****988255566.******************777788**** PP

>> zf-C3HC4_4  zinc finger of C3HC4-type, RING
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.6  13.9   8.3e-09     1e-05       1      42 []     372     412 ..     372     412 .. 0.93

  Alignments for each domain:
  == domain 1  score: 25.6 bits;  conditional E-value: 8.3e-09
  zf-C3HC4_4   1 CPiCl.dYLekPvsleCGhsfClsCisslqkepdgeqllCplC 42 
                 C iC  + ++ Pv leC h+fC  Ci+s+++  ++   +CplC
  KOO22106.1 372 CTICQeEHFTVPVRLECSHVFCEDCITSWCERTSN--PTCPLC 412
                 99**736************************9977..5***** PP

>> zf-C3HC4_2  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.4  13.0   3.2e-08   3.8e-05       2      40 .]     372     412 ..     371     412 .. 0.84

  Alignments for each domain:
  == domain 1  score: 23.4 bits;  conditional E-value: 3.2e-08
  zf-C3HC4_2   2 CpiCldmlkdpsvvtpCgHvfCqkCilrsLeekn..eCPlC 40 
                 C+iC+++  +  v  +C HvfC++Ci  + e+ +   CPlC
  KOO22106.1 372 CTICQEEHFTVPVRLECSHVFCEDCITSWCERTSnpTCPLC 412
                 *****9866544777*************99876558***** PP

>> Prok-RING_4  Prokaryotic RING finger family 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.3  11.9   6.5e-07   0.00078       1      38 [.     372     414 ..     372     419 .. 0.82

  Alignments for each domain:
  == domain 1  score: 19.3 bits;  conditional E-value: 6.5e-07
  Prok-RING_4   1 CvlCgeqekkail.epCgHlvCkeCfdsk...dls..sCPlCqr 38 
                  C +C+e++ ++++   C H++C++C  s+     s  +CPlC+ 
   KOO22106.1 372 CTICQEEHFTVPVrLECSHVFCEDCITSWcerT-SnpTCPLCRA 414
                  99****9877777258*************8643.369*****96 PP

>> zf-RING_5  zinc-RING finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.6  12.0   1.1e-06    0.0014       2      43 ..     372     413 ..     371     414 .. 0.93

  Alignments for each domain:
  == domain 1  score: 18.6 bits;  conditional E-value: 1.1e-06
   zf-RING_5   2 CnkCfeklskeekfyltsCgHifCekClkkll..ekeavCpiCr 43 
                 C +C e++     ++ ++C+H+fCe+C++     +++ +Cp+Cr
  KOO22106.1 372 CTICQEEH--FTVPVRLECSHVFCEDCITSWCerTSNPTCPLCR 413
                 999**999..999***************9987789********9 PP

>> zf-ANAPC11  Anaphase-promoting complex subunit 11 RING-H2 finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   3.1   9.2e-06     0.011      45      79 ..     382     414 ..     363     419 .. 0.77

  Alignments for each domain:
  == domain 1  score: 15.8 bits;  conditional E-value: 9.2e-06
                 S-EEEBTTS-EEEHHHHHHHHHHHSTSSB-TTTSS CS
  zf-ANAPC11  45 cplvlGkckhnfhlhcilkwletetskglcpmcrq 79 
                  p+   +c+h+f + ci+ w e+ ts+  cp+cr 
  KOO22106.1 382 VPVR-LECSHVFCEDCITSWCER-TSNPTCPLCRA 414
                 4443.37*************985.7999*****96 PP

>> zf-Nse  Zinc-finger of the MIZ type in Nse subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.2   5.9   0.00089       1.1      14      56 ..     372     412 ..     364     413 .. 0.84

  Alignments for each domain:
  == domain 1  score: 9.2 bits;  conditional E-value: 0.00089
                 -TTTS.SB-SSEEEESSS--EEEHHHHHHHCTTTS-EE-SCCC- CS
      zf-Nse  14 CPltl.qpfeePvtskkCpHvFEreaIlelikrkktvkCPvagC 56 
                 C + + + f+ Pv+  +C HvF ++ I++  +r+    CP+  C
  KOO22106.1 372 CTICQeEHFTVPVRL-ECSHVFCEDCITSWCERTSNPTCPL--C 412
                 666651469999975.8***********************9..7 PP

>> Zn_ribbon_17  Zinc-ribbon, C4HC2 type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.1  10.1    0.0017         2       7      46 ..     372     410 ..     368     412 .. 0.78

  Alignments for each domain:
  == domain 1  score: 8.1 bits;  conditional E-value: 0.0017
  Zn_ribbon_17   7 CayCelavkgrvvlcgvCeHvlHasCarewfenddlaeCp 46 
                   C++C+ + +  v +  +C Hv  ++C+ +w e +  + Cp
    KOO22106.1 372 CTICQEE-HFTVPVRLECSHVFCEDCITSWCERTSNPTCP 410
                   6666633.334445568******************9***9 PP

>> zf-RING_6  zf-RING of BARD1-type protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.2   6.6    0.0037       4.5      19      49 ..     382     415 ..     368     419 .. 0.69

  Alignments for each domain:
  == domain 1  score: 7.2 bits;  conditional E-value: 0.0037
   zf-RING_6  19 epvclggcehifcsncisd.cfgs...gcpvcytp 49 
                  pv l  c h+fc +ci+  c  +    cp+c +p
  KOO22106.1 382 VPVRL-ECSHVFCEDCITSwCERTsnpTCPLCRAP 415
                 56666.5**********652654312269999887 PP

>> zf-RING_11  RING-like zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.4   7.6    0.0064       7.7       2      29 .]     372     397 ..     371     397 .. 0.82

  Alignments for each domain:
  == domain 1  score: 6.4 bits;  conditional E-value: 0.0064
  zf-RING_11   2 CsICLeefkpgqalfilpCsHtFHfkCI 29 
                 C+IC ee       + l+CsH+F  +CI
  KOO22106.1 372 CTICQEEHF--TVPVRLECSHVFCEDCI 397
                 999999874..4556679*********9 PP

>> zf-P11  P-11 zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.0       1.5   1.7e+03      30      46 ..     249     265 ..     246     266 .. 0.89
   2 ?    0.9   0.0       0.3   3.6e+02      32      43 ..     366     377 ..     362     387 .. 0.81
   3 ?    7.3   4.6    0.0031       3.7      17      49 ..     387     420 ..     380     421 .. 0.80

  Alignments for each domain:
  == domain 1  score: -1.3 bits;  conditional E-value: 1.5
                 HHHHHSSBETTTSSB-- CS
      zf-P11  30 llLsvserCpiCkkPLP 46 
                 llL  +++  +C + LP
  KOO22106.1 249 LLLAKAQLALVCFYVLP 265
                 8999999999***9999 PP

  == domain 2  score: 0.9 bits;  conditional E-value: 0.3
                 HHHSSBETTTSS CS
      zf-P11  32 LsvserCpiCkk 43 
                 L  s+ C iC+ 
  KOO22106.1 366 LGDSDGCTICQE 377
                 6789******75 PP

  == domain 3  score: 7.3 bits;  conditional E-value: 0.0031
                 E-SSSEEEHHHHHHHH.HHSS.BETTTSSB----- CS
      zf-P11  17 eCsdHYLClrClqllL.svse.rCpiCkkPLPtkl 49 
                 eCs H  C  C +    + s+  Cp+C+ P+P  l
  KOO22106.1 387 ECS-HVFCEDCITSWCeRTSNpTCPLCRAPVPAAL 420
                 564.999****986652677757*********876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (436 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       675  (0.0376485); expected 358.6 (0.02)
Passed bias filter:                      376  (0.0209716); expected 358.6 (0.02)
Passed Vit filter:                        57  (0.00317921); expected 17.9 (0.001)
Passed Fwd filter:                        15  (0.000836633); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              15  [number of targets reported over threshold]
# CPU time: 0.48u 0.26s 00:00:00.74 Elapsed: 00:00:00.42
# Mc/sec: 3140.47
//
Query:       KOO22107.1  [L=739]
Description: hypothetical protein Ctob_000984 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    0.00065   19.3   0.4     0.0016   18.1   0.4    1.7  1  IQ        IQ calmodulin-binding motif
  ------ inclusion threshold ------
       0.02   15.5   1.1       0.05   14.2   1.1    1.7  1  SlyX      SlyX


Domain annotation for each model (and alignments):
>> IQ  IQ calmodulin-binding motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.1   0.4   1.7e-07    0.0016       1      20 [.     534     553 ..     534     554 .. 0.93

  Alignments for each domain:
  == domain 1  score: 18.1 bits;  conditional E-value: 1.7e-07
                 HHHHHHHHHHHHHHHHHHHH CS
          IQ   1 rkaaikIQaawRGylaRkry 20 
                 ++aa+k+Qa++RG ++R+++
  KOO22107.1 534 TDAAVKLQARVRGRRVRRHL 553
                 68****************96 PP

>> SlyX  SlyX
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   1.1   5.6e-06      0.05       2      50 ..      89     137 ..      88     146 .. 0.93

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 5.6e-06
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-XXX CS
        SlyX   2 eerleeLEiklafqedtieeLndvvaeqqqqidrlqrqlrllaerlkel 50 
                 eer ++L +++a +e+    L +++ +q++q +r+ + l++l+ + ++l
  KOO22107.1  89 EERCKQLDMRVAQLEHRTMILTNALRHQEEQNQRMSAALEELMAKTAAL 137
                 89*****************************************998776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (739 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       797  (0.0444531); expected 358.6 (0.02)
Passed bias filter:                      517  (0.028836); expected 358.6 (0.02)
Passed Vit filter:                        74  (0.00412739); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.65u 0.26s 00:00:00.91 Elapsed: 00:00:00.40
# Mc/sec: 5479.93
//
Query:       KOO22108.1  [L=432]
Description: tRNA pseudouridine synthase a [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.8e-28   99.1   0.0    2.6e-19   69.7   0.0    2.5  2  PseudoU_synth_1  tRNA pseudouridine synthase


Domain annotation for each model (and alignments):
>> PseudoU_synth_1  tRNA pseudouridine synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.9   0.0   2.9e-10   5.2e-06       3      86 ..      24     103 ..      23     111 .. 0.88
   2 !   69.7   0.0   1.4e-23   2.6e-19       1     107 [.     182     340 ..     182     341 .. 0.94

  Alignments for each domain:
  == domain 1  score: 26.9 bits;  conditional E-value: 2.9e-10
  PseudoU_synth_1   3 kelvGthdfgsfckqkqekkntvrtileaaieevsgeekellvvtvkgsgFldhqVRamvgvl.fa..vgqgklspedvkellnakk 86 
                      ++++Gt + g + + +q++ +t++ +lea+++++ g      +v v gsg++d++V+a  +v  f+  v+ g++++  ++++l++ +
       KOO22108.1  24 VAYDGTDYKG-W-QTQQPGLQTIQDVLEARLSKLLGG-----RVYVAGSGRTDAGVHARAQVFhFEppVEPGSKPVPHIAKVLDSSD 103
                      68********.9.799999*************99999.....9*******************9654334888899988988888765 PP

  == domain 2  score: 69.7 bits;  conditional E-value: 1.4e-23
  PseudoU_synth_1   1 AakelvGthdfgsfckqkqek.kntvrtileaaieevsgeekell.............................................vvtv 48 
                      Aa +lvGthdf++f  +++ + +++v+++ + ++++ sg  +++                                              ++ +
       KOO22108.1 182 AAARLVGTHDFSTFGVREPTDpRTPVKRMRRLEVRRHSGLMDPVAaaasvrpaaavdegtvasggegvsdagygglsglgigvgtsesvvTICA 275
                      899***********877777799************6666655555*******************************************999999 PP

  PseudoU_synth_1  49 kgsgFldhqVRamvgvlfavgqgklspedvkellnakkrkk......iavetapavglvlfhvrY 107
                      +++ Fl+++ R + g+l++vg g+l+p+dv+ ll+a+ rk+      + v +apa gl+l+h+ Y
       KOO22108.1 276 ECDRFLYNMMRMISGTLVEVGLGRLTPDDVSALLEARGRKAvrlergLEVVKAPALGLTLEHCFY 340
                      9*************************************9999999999***************99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (432 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       271  (0.0151152); expected 358.6 (0.02)
Passed bias filter:                      224  (0.0124937); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.25s 00:00:00.71 Elapsed: 00:00:00.40
# Mc/sec: 3225.87
//
Query:       KOO22109.1  [L=704]
Description: pkd domain-containing protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    6.4e-15   54.9  23.6    0.00014   21.8   0.5    6.5  6  SBBP         Beta-propeller repeat
  ------ inclusion threshold ------
      0.032   14.3   0.4      0.032   14.3   0.4    2.5  2  CcmD         Heme exporter protein D (CcmD)
      0.072   13.1   4.7        1.2    9.1   0.4    2.9  2  Lactamase_B  Metallo-beta-lactamase superfamily
       0.26   11.7   0.1       0.48   10.9   0.1    1.3  1  DUF2681      Protein of unknown function (DUF2681)
       0.57    9.2  10.5        1.8    7.6   0.3    3.1  3  DUF2625      Protein of unknown function DUF2625
        6.1    6.7   6.0        6.5    6.6   0.2    3.7  4  DUF3767      Protein of unknown function (DUF3767)


Domain annotation for each model (and alignments):
>> SBBP  Beta-propeller repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.6   0.1     0.022        66      15      31 ..      48      64 ..      43      64 .. 0.90
   2 !    8.5   0.2   0.00067         2      15      31 ..     109     125 ..     101     125 .. 0.91
   3 !    5.7   0.1    0.0051        15       2      31 ..     159     187 ..     158     187 .. 0.92
   4 !   21.3   0.3   6.4e-08   0.00019       2      31 ..     220     253 ..     219     253 .. 0.93
   5 !    7.3   0.4    0.0016       4.7       2      31 ..     286     314 ..     285     314 .. 0.84
   6 !   21.8   0.5   4.6e-08   0.00014       1      31 [.     346     375 ..     346     375 .. 0.97

  Alignments for each domain:
  == domain 1  score: 3.6 bits;  conditional E-value: 0.022
        SBBP 15 gngIavDsnGNiYvtGs 31
                g+ Ia D  G ++vtG+
  KOO22109.1 48 GSTIAPDGAGGSFVTGW 64
                789999**********7 PP

  == domain 2  score: 8.5 bits;  conditional E-value: 0.00067
        SBBP  15 gngIavDsnGNiYvtGs 31 
                 g++Ia D+ G ++v+G+
  KOO22109.1 109 GYSIASDDAGGAFVAGY 125
                 89**************8 PP

  == domain 3  score: 5.7 bits;  conditional E-value: 0.0051
        SBBP   2 WstqlGgpgastygngIavDsnGNiYvtGs 31 
                 W  q Gg g  + g++Ia D  G + vtG+
  KOO22109.1 159 WAVQAGGMGP-DHGYDIAQDGMGGALVTGD 187
                 9999999999.88****************5 PP

  == domain 4  score: 21.3 bits;  conditional E-value: 6.4e-08
        SBBP   2 WstqlG....gpgastygngIavDsnGNiYvtGs 31 
                 W  q G     +g+s++++gIa Ds G ++vtG+
  KOO22109.1 220 WAVQAGgefdEAGNSIEYYGIAHDSAGGAFVTGD 253
                 999999999999999******************5 PP

  == domain 5  score: 7.3 bits;  conditional E-value: 0.0016
        SBBP   2 WstqlGgpgastygngIavDsnGNiYvtGs 31 
                 W  q Gg g++  g+gIa D  G + vtG+
  KOO22109.1 286 WAVQAGGMGSNH-GHGIAQDGAGGALVTGD 314
                 777778777756.9***************5 PP

  == domain 6  score: 21.8 bits;  conditional E-value: 4.6e-08
        SBBP   1 qWstqlGgpgastygngIavDsnGNiYvtGs 31 
                 +W  q Gg+++ ++g+gIa D  G ++v+Gs
  KOO22109.1 346 DWAIQAGGASN-DEGRGIAHDGVGGAFVIGS 375
                 59*********.******************7 PP

>> CcmD  Heme exporter protein D (CcmD)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   1.4      0.66     2e+03       4      15 ..     369     380 ..     369     381 .. 0.92
   2 ?   14.3   0.4   1.1e-05     0.032       9      40 ..     519     550 ..     518     554 .. 0.92

  Alignments for each domain:
  == domain 1  score: -1.0 bits;  conditional E-value: 0.66
        CcmD   4 afYVWlsYgitl 15 
                 +++V +s++ t+
  KOO22109.1 369 GAFVIGSFAGTA 380
                 79*******997 PP

  == domain 2  score: 14.3 bits;  conditional E-value: 1.1e-05
        CcmD   9 lsYgitllvlagLilwslrdrrrllrelrrle 40 
                 l++++++l++ +L+lw  ++r ++l++ +++ 
  KOO22109.1 519 LAFAASVLTVSALLLWNSHRRNAQLAREKERL 550
                 79************************999876 PP

>> Lactamase_B  Metallo-beta-lactamase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.1   0.3     0.014        41     125     166 ..     162     203 ..     152     215 .. 0.87
   2 ?    9.1   0.4   0.00039       1.2     125     169 ..     289     333 ..     281     356 .. 0.88

  Alignments for each domain:
  == domain 1  score: 4.1 bits;  conditional E-value: 0.014
                  HECTTSTSCCEEEEEETTCCEEEECTTTSSHHCCCCCC.TTC CS
  Lactamase_B 125 vtggpghghghgvveygggkvlftGDallagetgridltlrg 166
                  + gg g+ hg  +  +g+g+ l+tGD+  +++ g+++l  rg
   KOO22109.1 162 QAGGMGPDHGYDIAQDGMGGALVTGDFRGNASFGSTTLVSRG 203
                  6789999**********************9999999885554 PP

  == domain 2  score: 9.1 bits;  conditional E-value: 0.00039
                  HECTTSTSCCEEEEEETTCCEEEECTTTSSHHCCCCCC.TTCEEE CS
  Lactamase_B 125 vtggpghghghgvveygggkvlftGDallagetgridltlrgaev 169
                  + gg g+ hghg+  +g g+ l+tGD+   ++ g+++l  rg+++
   KOO22109.1 289 QAGGMGSNHGHGIAQDGAGGALVTGDFMGKASFGSTTLVSRGNAD 333
                  67999************************9999999986666555 PP

>> DUF2681  Protein of unknown function (DUF2681)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.1   0.00016      0.48       7      47 ..     518     555 ..     513     561 .. 0.88

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00016
     DUF2681   7 lvgliaavlllvaylswqlkkarkknaklqaekqqlkveka 47 
                  ++++a+vl + a+l w +    ++na+l  ek++lk e  
  KOO22109.1 518 SLAFAASVLTVSALLLWNS---HRRNAQLAREKERLKYERS 555
                 5799**************9...5799***********9976 PP

>> DUF2625  Protein of unknown function DUF2625
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.5      0.25   7.5e+02      48      86 ..     129     160 ..     111     223 .. 0.68
   2 ?    7.1   0.5   0.00084       2.5      82     152 ..     217     289 ..     204     294 .. 0.84
   3 ?    7.6   0.3   0.00061       1.8      99     153 ..     358     413 ..     336     423 .. 0.80

  Alignments for each domain:
  == domain 1  score: -1.0 bits;  conditional E-value: 0.25
     DUF2625  48 rSvlGavvyetGGlliddGwlrvlGsgseklerslasln 86 
                 ++ +G+ v+e+ G + d   + v  sg+ +       ++
  KOO22109.1 129 KALFGSTVLEASGFVYDAFVMHVTASGTID-------WA 160
                 677888999999999999888888888654.......33 PP

  == domain 2  score: 7.1 bits;  conditional E-value: 0.00084
     DUF2625  82 laslnkvk..efaevgekaalLlvadDvlGgvfalnggklgedlGeiyYfapdslewealevgyseflawlls 152
                 + +++ +   ef e+g++ ++  +a+D +Gg f+    + +++ G+    +  +l+   + ++ s+ + w+++
  KOO22109.1 217 VIDWAVQAggEFDEAGNSIEYYGIAHDSAGGAFVTGDFRGETSFGSTSLASTGTLDIFVMHMTASGAIGWAVQ 289
                 5566654311677999999**************98888888999**999999****99*****9999999987 PP

  == domain 3  score: 7.6 bits;  conditional E-value: 0.00061
     DUF2625  99 alLlvadDvlGgvfalnggklgedlGeiyYfapdsleweal..evgyseflawllsg 153
                 +   +a+D +Gg f++ g   g+   ++y +  d+ +++a    v+ s+ + w+++ 
  KOO22109.1 358 EGRGIAHDGVGGAFVI-GSFAGTAWFQMYEYVTDNNAYDAFvtHVTASGAIDWVVRA 413
                 45569**********9.667899999*************953377888899998865 PP

>> DUF3767  Protein of unknown function (DUF3767)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.1       0.5   1.5e+03      40      69 ..      81     110 ..      65     113 .. 0.70
   2 ?    0.1   0.0      0.24   7.3e+02      43      70 ..     146     173 ..     129     177 .. 0.76
   3 ?   -3.3   0.1       2.8   8.3e+03      43      59 ..     207     223 ..     188     225 .. 0.65
   4 ?    6.6   0.2    0.0022       6.5      29      69 ..     258     299 ..     253     304 .. 0.83

  Alignments for each domain:
  == domain 1  score: -0.9 bits;  conditional E-value: 0.5
     DUF3767  40 GglrfvlkknvakaaNWavgafllgsivay 69 
                  + +fv++ +++ ++ W+v a   +  v+y
  KOO22109.1  81 SMSTFVMHVTASGTIDWGVKAGGESECVGY 110
                 445899*************98776666666 PP

  == domain 2  score: 0.1 bits;  conditional E-value: 0.24
     DUF3767  43 rfvlkknvakaaNWavgafllgsivaye 70 
                  fv++ +++ ++ Wav a  +g   +y+
  KOO22109.1 146 AFVMHVTASGTIDWAVQAGGMGPDHGYD 173
                 599999**********998888666665 PP

  == domain 3  score: -3.3 bits;  conditional E-value: 2.8
     DUF3767  43 rfvlkknvakaaNWavg 59 
                  fv++ +++  + Wav 
  KOO22109.1 207 AFVMHVTASGVIDWAVQ 223
                 47777788888889886 PP

  == domain 4  score: 6.6 bits;  conditional E-value: 0.0022
     DUF3767  29 lltGigagavvGglr.fvlkknvakaaNWavgafllgsivay 69 
                 + +G ++ a++G+l  fv++ +++ a+ Wav a  +gs  ++
  KOO22109.1 258 TSFGSTSLASTGTLDiFVMHMTASGAIGWAVQAGGMGSNHGH 299
                 56788999999*995489***************999997665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (704 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       369  (0.0205812); expected 358.6 (0.02)
Passed bias filter:                      215  (0.0119917); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.58u 0.24s 00:00:00.82 Elapsed: 00:00:00.41
# Mc/sec: 5208.62
//
Query:       KOO22110.1  [L=587]
Description: hemolysin-related protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.6e-36  125.7   5.9    2.8e-36  124.9   5.9    1.4  1  DUF21      Cyclin M transmembrane N-terminal domain
    1.4e-15   57.0   0.1    3.3e-15   55.8   0.1    1.6  1  CorC_HlyC  Transporter associated domain
    8.1e-13   48.6   0.8    9.7e-07   29.1   0.1    2.5  2  CBS        CBS domain


Domain annotation for each model (and alignments):
>> DUF21  Cyclin M transmembrane N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  124.9   5.9   4.7e-40   2.8e-36       1     175 [.     118     295 ..     118     296 .. 0.97

  Alignments for each domain:
  == domain 1  score: 124.9 bits;  conditional E-value: 4.7e-40
       DUF21   1 liivlllllsaffsgaEtAlvslsrlrleelaekgkkkakrllkllknperlLstlligntlvnillsalatalfvellaegalavviatvivtllilv 99 
                 +i+++l+ ++a+f+gaEtA+++l + ++++la++g  + +    l k+  ++L+t+l+g+t+++i+ +alat+++v l+  g+++v  atv+vt ++l+
  KOO22110.1 118 IIWFFLFSMAALFAGAETAITTLWPWKVKQLAAEGG-EDSPFAALEKDITKVLTTVLVGVTFCTIFQTALATDVAVGLF--GKAGVGYATVAVTAVTLF 213
                 799********************************7.777788************************************..689*************** PP

       DUF21 100 fgEilPkslalkyaekialalapplrvlmvllyPlvwllskllnlil......esesepavseeelkklveeseeegvieee 175
                 fgEilPksla+++ae++a ++ p++ v+++ll+Pl+++ s   + +l      +++ + av+  el+++++++ ++g++e  
  KOO22110.1 214 FGEILPKSLAVAQAERFANFTLPLINVFSYLLTPLSAFTSFANDRLLsafgvgSEDANVAVTMPELRMVLSSASQSGAVEVY 295
                 *****************************************************99**********************99865 PP

>> CorC_HlyC  Transporter associated domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.8   0.1   5.5e-19   3.3e-15       4      78 ..     455     537 ..     453     540 .. 0.89

  Alignments for each domain:
  == domain 1  score: 55.8 bits;  conditional E-value: 5.5e-19
                 CTTEEEEETT-BHHHHHHHHTST..THHC...T-SBHHHHHHHHH-S---TT-EEEEEETT...EEEEEEEEETTCEEEEEEE CS
   CorC_HlyC   4 degsylvdGslpldeleeelgle..lpee...dyeTlgGlllellgriPkegesvevdleg...lrftVlemdgrrIkkvrve 78 
                 ++gsy++dG ++ld + e+l+l+  ++ee   ++ Tl+G+l+++ g+iP eg +v v+ ++   +rftVl  d+rrI +v+ +
  KOO22110.1 455 SDGSYVIDGMADLDMVTERLNLTdqIDEEllnEFATLSGFLCHQAGEIPSEGFNVLVRRKDetaVRFTVLGGDERRILSVKAT 537
                 69********************55799999989********************99884332355****************987 PP

>> CBS  CBS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.1   0.1   1.6e-10   9.7e-07       1      54 [.     311     367 ..     311     370 .. 0.85
   2 !   17.5   0.1   6.9e-07    0.0041       9      46 ..     405     443 ..     395     445 .. 0.81

  Alignments for each domain:
  == domain 1  score: 29.1 bits;  conditional E-value: 1.6e-10
                 HHHHSBS..SCEEEETTSBHHHHHHH.HHHHTSSEEEEE.ETTT..BEEEEEEHHHHHHH CS
         CBS   1 Vgdimtr..dvvtvppdttleealel.mrekgvsrlPVV.dedg..klvGivtlrDllra 54 
                 V +imt+  ++v v  +++l+e+lel m  k++sr+PV  +     ++vG+v  r ll +
  KOO22110.1 311 VDQIMTPrvELVAVAQTASLAELLELtM-AKKYSRVPVYnE--TidEIVGVVLSRNLLAY 367
                 679999955669****************.888******943..4458**********987 PP

  == domain 2  score: 17.5 bits;  conditional E-value: 6.9e-07
                 CE.EEETTSBHHHHHHHHHHHTSSEEEE.EETTTBEEEEE CS
         CBS   9 vv.tvppdttleealelmrekgvsrlPV.VdedgklvGiv 46 
                 +v +vp+++t+  al++mr+ +  +++V Vde+g   Giv
  KOO22110.1 405 PVgFVPESMTVMNALKQMRRQRA-HMMVvVDEYGGTSGIV 443
                 4459**************99886.565527****999998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (587 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       522  (0.0291148); expected 358.6 (0.02)
Passed bias filter:                      358  (0.0199677); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.51u 0.24s 00:00:00.75 Elapsed: 00:00:00.39
# Mc/sec: 4491.74
//
Query:       KOO22111.1  [L=520]
Description: hypothetical protein Ctob_000992 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
     0.0062   16.1   0.6      0.013   15.1   0.6    1.6  1  SapC        SapC
     0.0096   16.0   2.9      0.021   14.9   2.9    1.5  1  Mucin-like  Mucin-like
  ------ inclusion threshold ------
        3.7    7.5   7.8       0.87    9.5   3.4    2.3  2  DUF4410     Domain of unknown function (DUF4410)


Domain annotation for each model (and alignments):
>> SapC  SapC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.6   2.2e-06     0.013     113     174 ..      92     152 ..      54     165 .. 0.83

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 2.2e-06
        SapC 113 eeeGeaLFdedgepteylekvlefleeleegkertqafiaaLeeldLlepvelkvtlddgek 174
                 ++  ++LFd+d +p e+l+++++ ++  ++ +e+  af a+Le+ +Ll+++ +++t ++ e+
  KOO22111.1  92 ADAARPLFDADTAPEEFLRSMQAEIA-TQTYAEAEAAFAARLEAEGLLTAAMVALTVAKAEE 152
                 35569**************9988776.577788899***************99999988544 PP

>> Mucin-like  Mucin-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   2.9   3.6e-06     0.021      40      90 ..      13      63 ..       6      82 .. 0.52

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 3.6e-06
  Mucin-like 40 gepprdpsssytapqsapsssytappstpsssygeppaapsssytapprdp 90
                ++p++d  +   a+q +++ sy a++  ++ sy +++ +++ sy a++ ++
  KOO22111.1 13 TAPQADEGDRARAAQLQSEASYRAAQLQSEASYRAAQLQSEASYRAAQLQS 63
                444444444444445555555555555555555555555555554444433 PP

>> DUF4410  Domain of unknown function (DUF4410)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   3.4   0.00015      0.87       9      56 ..      46      96 ..      23     105 .. 0.80
   2 ?   -3.0   0.1         1   6.2e+03      26      56 ..     115     145 ..     107     151 .. 0.63

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 0.00015
     DUF4410  9 eaaeiksddg...seaasqqadakelvdamadaLvkeLkskglfarrsaag 56
                 aa+++s+ +    + +s++ad +e +++mada+ ++L+s++ +a+  aa 
  KOO22111.1 46 RAAQLQSEASyraAQLQSEAADDEEEARQMADAIRASLASAEAEAAADAAR 96
                45566666558889999999999******************9999987765 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 1
     DUF4410  26 adakelvdamadaLvkeLkskglfarrsaag 56 
                 + a ++ +   +a+ ++L+++gl ++   a 
  KOO22111.1 115 EIATQTYAEAEAAFAARLEAEGLLTAAMVAL 145
                 4555555556677777777777776665555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (520 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1313  (0.0732333); expected 358.6 (0.02)
Passed bias filter:                      450  (0.025099); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.57u 0.21s 00:00:00.77 Elapsed: 00:00:00.37
# Mc/sec: 4166.89
//
Query:       KOO22112.1  [L=1589]
Description: glutamate synthase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   1.3e-147  491.7   1.3   2.3e-146  487.7   0.0    2.1  2  Glu_synthase     Conserved region in glutamate synthase
     7e-147  489.5   0.0     1e-146  489.0   0.0    1.2  1  GATase_2         Glutamine amidotransferases class-II
   3.5e-100  335.1   0.0   9.8e-100  333.6   0.0    1.7  2  Glu_syn_central  Glutamate synthase central domain
    9.1e-62  208.0   3.2    1.7e-61  207.1   3.2    1.4  1  GXGXG            GXGXG motif
  ------ inclusion threshold ------
       0.48    9.4   3.6       0.95    8.4   3.6    1.4  1  FMN_dh           FMN-dependent dehydrogenase


Domain annotation for each model (and alignments):
>> Glu_synthase  Conserved region in glutamate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.9   0.2     0.014        50     224     300 ..     657     729 ..     620     731 .. 0.77
   2 !  487.7   0.0  6.4e-150  2.3e-146       4     367 ..     864    1251 ..     861    1252 .. 0.96

  Alignments for each domain:
  == domain 1  score: 2.9 bits;  conditional E-value: 0.014
                   HHTT-SEEEEE-TT.---SSEEHHHHHHB---HHHHHHHHHHHHHHTT-GGG-EEEEES.S--SHHHHHHHHHHT-SEE CS
  Glu_synthase 224 akanadiilidGle.GGTGAspkssikhaGlPlelalaevdqtlkeeglrdrvsliadG.glktgadvvkalalGAdav 300
                   ++++a++i+++  + GG G      ++ a +P +la+ +v++ l++ g+r + s+i++  +  +++ ++  + +GA av
    KOO22112.1 657 VRNGAEVIVLSDQKaGGMG------VDDAFIPPLLAVGAVHHHLITAGVRLEASIIVETaQAWSTHHIACLVGFGASAV 729
                   5566777777655415544......688899***********************9997515556666766667777765 PP

  == domain 2  score: 487.7 bits;  conditional E-value: 6.4e-150
                    -HHHHHHHHHHHHH.....---HHHHHHHHHHHTS.-S-SGGGGEEE--SS--.--GGGS--HHHHHTTEE---B-TTTS-HHHHHHHHHHHHHH CS
  Glu_synthase    4 eievikllqkavqv.....eskesidkyrekleerevlkakrdlleldaaeealikleevepalkikkriltsamSyGalseeahealakamnrl 93  
                    ++ +++ll+ka ++     e  + +++y+ ++ee  v  + rd+le+ +++++ i+++ vep+++i kr++t++mS+Gals+eahe+la+++nr+
    KOO22112.1  864 NPPMSRLLHKALRSadasgEGLDFYKTYTDSVEET-VPSTIRDMLEIVSDRKP-ISIDLVEPVEAIMKRFCTGGMSLGALSREAHETLAIGVNRA 956 
                    55677777777777665555667799999999999.778889***********.89*************************************** PP

                    T-B-EETTS---GGGGS-----.......................SEEEE-TT-TT--HHHHHH-SEEEEE---TTSTTS--EE-GGG--HHHHH CS
  Glu_synthase   94 gtksntGEGGedeerlktakdv.......................aikQvasgrFGvteeyLnnakaleikiaQGakpgeGgqlpgeKvseeiak 165 
                    g+ sn+GEGGede r++  +d+                       +ikQvasgrFGvt+ yL++a+++eikiaQGakpgeGgqlpg+Kv e+ia+
    KOO22112.1  957 GGRSNSGEGGEDECRWSSIEDAtaegtsdsfphlkglrngdiavsKIKQVASGRFGVTPAYLMSAEQIEIKIAQGAKPGEGGQLPGSKVNEYIAS 1051
                    ********************999************************************************************************ PP

                    HHTS-TT--EE--SS-TT-SSHHHHHHHHHHHHHH-TTSEEEEEEE-STTHHHHHHHHHHTT-SEEEEE-TT---SSEEHHHHHHB---HHHHHH CS
  Glu_synthase  166 iRkikpgvdliSPaphhdiysiedlaqliedLkevnkeakvsvKlvaeagvetiaagvakanadiilidGleGGTGAspkssikhaGlPlelala 260 
                    iR  k gv+l+SP+phhdiysiedlaqli+dL+++n++akvsvKlv++ g++t+a+gvaka+ d+i+i+G++GGTGA+p +sikhaG P+el+la
    KOO22112.1 1052 IRACKKGVMLVSPPPHHDIYSIEDLAQLIYDLHQINPKAKVSVKLVSQVGIGTVASGVAKAGSDVIQISGHDGGTGAAPLTSIKHAGGPWELGLA 1146
                    *********************************************************************************************** PP

                    HHHHHHHHTT-GGG-EEEEESS--SHHHHHHHHHHT-SEEE-SHHHHHHTT--S---GGGT--TTSSS---HHHH..TT----HHHHHHHHHHHH CS
  Glu_synthase  261 evdqtlkeeglrdrvsliadGglktgadvvkalalGAdavgigtaalialgCimarvChtntCpvGvatqdpeLrkrlkveekaervvnyikala 355 
                    e++q+l+ +glrdrv+l++dGglktg dv++++++GA+++g+gt+a+i++gCi+ar+Chtn+CpvGv+tq+ eLr  +k+ +++++  n++ + a
    KOO22112.1 1147 EAHQQLVLNGLRDRVVLRVDGGLKTGYDVLMGALFGANEFGFGTIAMISVGCIVARICHTNNCPVGVTTQKKELR--EKFVGVPSDTFNFFWYAA 1239
                    ***************************************************************************..****************** PP

                    HHHHHHHHHHT- CS
  Glu_synthase  356 eevrellaalgi 367 
                    +evr+ la+lg+
    KOO22112.1 1240 QEVRQCLAELGY 1251
                    **********98 PP

>> GATase_2  Glutamine amidotransferases class-II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  489.0   0.0  2.8e-150    1e-146       1     420 []      70     483 ..      70     483 .. 0.96

  Alignments for each domain:
  == domain 1  score: 489.0 bits;  conditional E-value: 2.8e-150
                 -EEEEEE-SSS--BSHHHHHHHHHHHHGGGGS-B-TTSSSBSEEEEEEE--HHHHHHHHHHTT-----GGG-EEEEEEE-SSHHHHHHHHHHHHHHHHH CS
    GATase_2   1 CGvgfiaelkgkkshkivekalealenleHRGavgadektGDGaGillqiPdeflrkeakekgielpeageyavgmlflpkdeekaeeakkileeivee 99 
                 CGvgfia++kg++ h+ + +a++al+++eHRG++g d  +GDGaG+l+++P+e++++e     ++ + +++ +v+m+flp+ e++a++a++ le  +++
  KOO22112.1  70 CGVGFIADIKGRRRHETIARAIHALSCMEHRGGCGGDGISGDGAGVLTSVPWELFEAEGY---LKGKPSESCGVAMMFLPQAEADAQKAQSLLEVQAAA 165
                 *******************************************************99884...55567789**************************** PP

                 TT-EEEEEEE--B-GGGS-HHHHHH--EEEEEEEE-TT---HHHHHHHHHHHHHHHGGG.........-BTTBEEEEEESSEEEEEESS-GGGHHHHBH CS
    GATase_2 100 eglevlgwRevpvdksvlgeaakesePsieqvfvekkedlseeelerklyviRkriekeiakkk....aekefYicslssrtivYkglltseqlkefyk 194
                 +g+  lgwR+ p +k+vlg  a+++ P+i+q f+++++ l+ ++le  ly +R+ ++ e+  k        + Y+cslssrti+Ykg+++s+ l+ fy 
  KOO22112.1 166 KGFVFLGWRDPPQNKDVLGPLARAALPRIRQAFLHHPT-LRGDALEAALYQVRRSTQAEVLDKCgkrvGGAQTYFCSLSSRTIIYKGMVMSAVLGPFYG 263
                 *************************************9.***************999888765555568899*************************** PP

                 GGGSTT--BSEEEEEE---SSSS--GGGSSS-SSEEEEE--TTHHHHHHHHHHHCTT--BT-HH.HHHTC--S--TTS-HHHHHHHHHHHHHHTT.--H CS
    GATase_2 195 dlkdeelesalalvHsRfstntfPsWelaqPlRllaHnGEintlrGnknwmkareaelksellgdelekllPivneegsDsasldnvlellvlsg.rsl 292
                 dl+++++++++a++H+Rfstnt P+W+laqP+R+laHnGEintl Gn+nw +a + + k            P+++ ++sDsa+ld v+e lv+sg +++
  KOO22112.1 264 DLTNPAFHTNFAVYHRRFSTNTNPKWPLAQPMRCLAHNGEINTLIGNVNWQRALDIQRKR---------RDPLCSLDKSDSANLDAVFENLVRSGgKTP 353
                 ***************************************************998765443.........47********************99886889 PP

                 HHHHHHHS----TT-GGGT..HHHHHHHHHHTTT-----SSEEEEEE-SSEEEEEE-TT--S--EEEEETT--EEEESSTTSS---GGGEEEEEE--TT CS
    GATase_2 293 aealmlliPeawennksld..kekkafyeyasalmepWDGPalivftdGkvvgavLDRnGLRPaRylvtkddlvvlasEvGvldleeeevvekgrlqPG 389
                 a al +l+Pea++++++ +  +e +a+yey+s l+epWDGPal++f+dGk++ga+LDRnGLRPaRyl+tkd+l+ + sE+Gv++++++evv+kgrl+PG
  KOO22112.1 354 AMALSILVPEAYREQPEYKndPEVEAMYEYYSGLQEPWDGPALLIFCDGKQLGATLDRNGLRPARYLLTKDGLLGFMSETGVIEVDDSEVVSKGRLGPG 452
                 99*************99887799**************************************************************************** PP

                 -EEEEETTTTEEEEHHHHHHHHHTTS-HHHH CS
    GATase_2 390 rmllvdleegriledeeikkkiaskkpykew 420
                 +m+++dle+g+   ++e+k+++ask py+ew
  KOO22112.1 453 NMITLDLETGEFRPNQEVKRDLASKAPYGEW 483
                 ******************************9 PP

>> Glu_syn_central  Glutamate synthase central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  333.6   0.0  2.7e-103  9.8e-100       2     278 ..     511     802 ..     510     803 .. 0.89
   2 ?   -3.0   0.0       1.1   4.1e+03     173     198 ..    1143    1168 ..    1133    1179 .. 0.86

  Alignments for each domain:
  == domain 1  score: 333.6 bits;  conditional E-value: 2.7e-103
                      HHHHTT--HHHHHHTHHHHHHHSS--EE-S---S--TTT-SS---GGGGEEE----SSS----TTTTGGG-B--EEES----SSS.--GGGG-E CS
  Glu_syn_central   2 rqkafgyteedlelllepmakegkeaigsmGdDtplavLsekprllydYFkqlfAqVTNPpiDpiREelvmsletllGkegnlle.eeeeqakr 94 
                      +++afg++ edle+ +  ma++gke+++s+G+DtplavLsekp++lydYFkq+fAqVTNPpiDp+RE +vm+l+++lGk+++l + +++e a++
       KOO22112.1 511 QLTAFGWSLEDLEMQVGDMANSGKETLFSLGEDTPLAVLSEKPHPLYDYFKQRFAQVTNPPIDPLREGIVMNLDMALGKRHDLRDaPSPELAEQ 604
                      679********************************************************************************998899***** PP

                      EEESSSB--HHHHHHH....HHSSS-EEEEESEE.......SHHHHHHHHHHHHHHHHHTT-SEEEEESS-...-STTEEE--HHHHHHHHHHH CS
  Glu_syn_central  95 lklesPiLteeeleklkklkekkefkaktlditfeae....aleealerlceeaeeavregaeilvLsDrk...vseervpipslLavgavhhh 181
                      l+++sP+L+ +el +++kl+     k++t +++++ +    +le+a+++lc++ae++vr+gae++vLsD+k   ++ + + ip+lLavgavhhh
       KOO22112.1 605 LRITSPVLNGNELGAIRKLR-----KVATASTIYPISdgpeGLEKAVKALCAAAEQQVRNGAEVIVLSDQKaggMGVDDAFIPPLLAVGAVHHH 693
                      ****************8884.....56666677765544447****************************73336789**************** PP

                      HHHTT-GGG-EEEEEESS--SHHHHHHHHHTT-SEEEEHHHHHHHHHHHTTTS-............----HHHHHHHHHHHHHHHHHHHTT--B CS
  Glu_syn_central 182 LvrkglrtkvslvvesgearevhhfavllgyGadavnPylaletieklveegal............aeeeleknyrkavekGllKimskmGist 263
                      L+ +g+r ++s++ve+++a+++hh+a+l+g+Ga+av+Pyl++++++ l ++++             + +++ +n+r a+++G+lKi+sk+Gis 
       KOO22112.1 694 LITAGVRLEASIIVETAQAWSTHHIACLVGFGASAVHPYLLYSSVKYLYASEKRtkmrasgqindiTLAKNFENLRYALDSGVLKILSKIGISL 787
                      *********************************************777666633233333333433444444********************** PP

                      HHHHHHS--EEESSB CS
  Glu_syn_central 264 lqSYkgaqifeavGl 278
                      l+SY+gaqifea+Gl
       KOO22112.1 788 LSSYHGAQIFEAIGL 802
                      **************9 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 1.1
                       HHHHHHHHHHHHTT-GGG-EEEEEES CS
  Glu_syn_central  173 LavgavhhhLvrkglrtkvslvvesg 198 
                       L ++  h++Lv +glr +v l v+ g
       KOO22112.1 1143 LGLAEAHQQLVLNGLRDRVVLRVDGG 1168
                       667889*************9988766 PP

>> GXGXG  GXGXG motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  207.1   3.2   4.8e-65   1.7e-61       2     179 ..    1335    1518 ..    1334    1524 .. 0.93

  Alignments for each domain:
  == domain 1  score: 207.1 bits;  conditional E-value: 4.8e-65
                  EE-TT--STTHHHHHHHHHHHTTT---.-EEEEEEEEEE-TTTTTT--TTEEEEEEEEE-STTTTT-ESSEEEEE--T.....T-SS-GGGSB-S-S CS
       GXGXG    2 eirnldrsvgtilsneiakrygeeglpedtikiklkGsaGqslgaflakGltleleGdandyvGkglsgGkivikpsk.....eskfkaeeniivGn 93  
                  +i+n+dr+  +++ +eiak +g++g + +++++ ++G aGqs+g  ++ Gl le+ GdandyvGk+++gG+i i+p +     +  f++++++ivGn
  KOO22112.1 1335 SITNVDRTASARITGEIAKLHGNKGWR-GSLHLIFTGCAGQSFGFACLPGLDLEVRGDANDYVGKSMHGGRIRIRPVDciegrKIGFDPSKSVIVGN 1430
                  589***********************9.***********************************************99866555677*********** PP

                  STTTT--SEEEEESSB--SSTTTT-SS-EEEESEB-SSTTTT-EEEEEEE-S-B-SSBTTT--EEEEEEE-SSST..HHHHB-TTT-E CS
       GXGXG   94 vvlygatgGklfirgkageRfavrnsgatavvegvgdhgceYmtGGvvvvLgktgrnfaaGmsgGiayvldedek..fekklnkelve 179 
                  ++lygatgG+ f+ g+ageRf+vrns+a+avveg+gdh+ceYmtGGvv vLg +grn++aG +gG  y+l+  e+  ++ ++n ++v+
  KOO22112.1 1431 TCLYGATGGRFFACGRAGERFCVRNSNAEAVVEGAGDHCCEYMTGGVVAVLGPVGRNVGAGQTGGWGYFLEDGEDysLDGRINSDVVM 1518
                  **********************************************************************666552267788888775 PP

>> FMN_dh  FMN-dependent dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.4   3.6   0.00027      0.95     231     305 ..    1107    1194 ..    1083    1202 .. 0.72

  Alignments for each domain:
  == domain 1  score: 8.4 bits;  conditional E-value: 0.00027
                  HHHHHTTESEEEE--GGG.......TSSTT---HHHCH........HHHHHHH.......SS-EEEESS--SHHHHHHHHHTT-SEEEESHHHHH CS
      FMN_dh  231 kraveaGvdgivvSNHGG.......RqldgapatidvL........peiveav.....ggrievlvDgGirrGsDvlkAlalGAdavllGRpfly 305 
                    +++aG d i +S H G               +i+           e  +++     ++r+ + vDgG ++G Dvl     GA+  ++G  ++ 
  KOO22112.1 1107 SGVAKAGSDVIQISGHDGgtgaaplT-------SIKHAggpwelglAEAHQQLvlnglRDRVVLRVDGGLKTGYDVLMGALFGANEFGFGTIAMI 1194
                  567899**********9933443333.......3333333333222333333334333679************************9999977665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1589 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       410  (0.022868); expected 358.6 (0.02)
Passed bias filter:                      392  (0.021864); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.84u 0.29s 00:00:01.12 Elapsed: 00:00:00.44
# Mc/sec: 10925.15
//
Query:       KOO22113.1  [L=841]
Description: hypothetical protein Ctob_000995, partial [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (841 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1350  (0.075297); expected 358.6 (0.02)
Passed bias filter:                      495  (0.0276089); expected 358.6 (0.02)
Passed Vit filter:                        50  (0.00278878); expected 17.9 (0.001)
Passed Fwd filter:                        17  (0.000948185); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.86u 0.33s 00:00:01.19 Elapsed: 00:00:00.49
# Mc/sec: 5166.92
//
Query:       KOO22114.1  [L=344]
Description: hypothetical protein Ctob_005801 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      0.006   16.5   0.0      0.019   15.0   0.0    1.9  1  LRR_6     Leucine Rich repeat


Domain annotation for each model (and alignments):
>> LRR_6  Leucine Rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.0   1.1e-06     0.019       5      23 ..     175     193 ..     172     194 .. 0.92

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 1.1e-06
       LRR_6   5 LteLdLsgNdIgDeGaeaL 23 
                 L+ L+LsgN++ D+G+e L
  KOO22114.1 175 LEFLHLSGNQVRDAGMEML 193
                 889**************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (344 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       236  (0.013163); expected 358.6 (0.02)
Passed bias filter:                      224  (0.0124937); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.26s 00:00:00.71 Elapsed: 00:00:00.43
# Mc/sec: 2430.31
//
Query:       KOO22115.1  [L=432]
Description: hypothetical protein Ctob_005800 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    0.00019   21.3   0.0    0.00042   20.3   0.0    1.5  1  BSD             BSD domain
    0.00051   19.8   0.0     0.0059   16.4   0.0    2.2  2  Cytidylate_kin  Cytidylate kinase
  ------ inclusion threshold ------
      0.067   13.6   0.0       0.22   11.9   0.0    1.9  1  AAA_17          AAA domain


Domain annotation for each model (and alignments):
>> BSD  BSD domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.3   0.0   7.1e-08   0.00042      12      46 ..      66     100 ..      60     103 .. 0.83

  Alignments for each domain:
  == domain 1  score: 20.3 bits;  conditional E-value: 7.1e-08
         BSD  12 eiaqsllkedpeLrklynelVPskvseeqFWsrYf 46 
                 e a +    d  L +l ++ VP++v+e++FW+ +f
  KOO22115.1  66 ERASAAAALDVGLNRLVYKCVPKRVPEAEFWRCFF 100
                 5566666678889********************99 PP

>> Cytidylate_kin  Cytidylate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.1   0.0     0.046   2.8e+02     164     187 ..     156     179 ..     145     212 .. 0.82
   2 !   16.4   0.0   9.8e-07    0.0059       3     122 ..     225     366 ..     223     402 .. 0.75

  Alignments for each domain:
  == domain 1  score: 1.1 bits;  conditional E-value: 0.046
                     HHHHHHHHHHHHCTSSS-S---TT CS
  Cytidylate_kin 164 laeikeRDklDkerevgpLklaed 187
                     +++i +RD+ D e+ ++++ +a +
      KOO22115.1 156 MEDILKRDAEDGEKLAAGITMAVE 179
                     67899*********9999998865 PP

  == domain 2  score: 16.4 bits;  conditional E-value: 9.8e-07
                     EE-STTSSHHHHHHHHHHHH.T-EEEEHHHHHHHHHHHHHHT..............T--TT-HHHHHHHHH...T--EEEEEEEEEETTEE-TTG CS
  Cytidylate_kin   3 iDGPagsGKssvaralaekl.glkyldtgalYRalalaalrr..............kvdlldeaalvelak...evelsfeaekvllngedveee 79 
                     + G +g+GK++ + +l +kl  ++  + g+++R l+l a+ +                 l+++ a +++ak   + ++++e   +    ++v ++
      KOO22115.1 225 LQGLSGTGKGTTCSLLEQKLpRCTSWSNGNVFRSLTLLAVAKceksglafkpefltPLFLAEVMACLSFAKhngKFDIKIEGYGLSCHVSEVANT 319
                     6799****************4578899************99999999999999988444455555555555111456666666666666777666 PP

                     .GGSHHHHHHHHHHTTSHH..HHHHHHHHHHTT-B.SSBEEEEESSI CS
  Cytidylate_kin  80 .lrsdevekavSavaaipa..vRailvkklrelvk.karvvveGRDi 122
                      l+  +v k + +va++++  v         ++     +v++eGR  
      KOO22115.1 320 iLKEPKVGKNIPTVAKMTQgeVVGFAAAAAEAMRAdGMNVLMEGREQ 366
                     36778999999999988642255555555555555478889999975 PP

>> AAA_17  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   3.7e-05      0.22       2      32 ..     227     258 ..     226     269 .. 0.92

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 3.7e-05
                 E-TTSSHHHHHHHHHHHH.TEEEEEHHHHHHH CS
      AAA_17   2 GgPGsGKgtqceklveky.gfthlsaGdllre 32 
                 G+ G GKgt c+ l +k+   t  s G ++r+
  KOO22115.1 227 GLSGTGKGTTCSLLEQKLpRCTSWSNGNVFRS 258
                 99***************988999999999997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (432 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       355  (0.0198003); expected 358.6 (0.02)
Passed bias filter:                      310  (0.0172904); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.49u 0.22s 00:00:00.71 Elapsed: 00:00:00.40
# Mc/sec: 3231.02
//
Query:       KOO22116.1  [L=529]
Description: hypothetical protein Ctob_005803 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
          4    7.8   5.5       0.86    9.9   1.3    2.0  2  Utp12     Dip2/Utp12 Family


Domain annotation for each model (and alignments):
>> Utp12  Dip2/Utp12 Family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.2       0.5     9e+03      61      86 ..     283     307 ..     276     322 .. 0.54
   2 ?    9.9   1.3   4.8e-05      0.86      20      99 ..     386     499 ..     369     506 .. 0.78

  Alignments for each domain:
  == domain 1  score: -3.0 bits;  conditional E-value: 0.5
                 HHHHHHHHSH.HHHHHHHHHHHHHHH CS
       Utp12  61 vHgsylvaspsdlvpaLrslqkslre 86 
                  H++  v+  + lv++L+   +  ++
  KOO22116.1 283 LHHTSAVTEEH-LVRILELALRERQA 307
                 45555555554.66655554444444 PP

  == domain 2  score: 9.9 bits;  conditional E-value: 4.8e-05
                 HHHHCS-CTCHHHHHHHHHHHH.HTT....................................TTHHHHHHHHHHHHHHHHHHHHHSH.HHHHHHHHHHH CS
       Utp12  20 ltvlrLpssyvlkLLeflaerlaeks....................................phlelllrwlkallrvHgsylvaspsdlvpaLrslqk 82 
                 +++++Lp+   + LL+ l ++l ++                                     p l+ ++ wl+ l+ +H+s l  +       L sl+ 
  KOO22116.1 386 QALRSLPLDDTVSLLQRLLTLL-SRYfaplateggvgavpssralaasrslsagsaaaasgaPSLSQIVGWLNVLIDAHFSRLLIHAP-CHGLLHSLNG 482
                 5788888755555555555544.3334556677889999999999999999999999988889********************97765.5668999999 PP

                 HHHHHHHHHHHHHHHHH CS
       Utp12  83 slrerlktlskllglnl 99 
                 + r+++k  s+l gl+ 
  KOO22116.1 483 LARRHVKACSSLKGLKG 499
                 99999999888888874 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (529 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       625  (0.0348597); expected 358.6 (0.02)
Passed bias filter:                      324  (0.0180713); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.53u 0.22s 00:00:00.75 Elapsed: 00:00:00.40
# Mc/sec: 3956.76
//
Query:       KOO22117.1  [L=169]
Description: hypothetical protein Ctob_005802 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.1e-05   25.2   1.1      0.034   14.1   0.0    3.0  3  Tricorn_PDZ      Tricorn protease PDZ domain
    0.00021   21.6   0.7    0.00078   19.8   0.1    2.1  2  PDZ              PDZ domain
  ------ inclusion threshold ------
      0.024   15.0   0.2       0.93    9.9   0.1    2.3  2  PDZ_2            PDZ domain
      0.091   13.2   0.0       0.18   12.2   0.0    1.5  1  Acylphosphatase  Acylphosphatase


Domain annotation for each model (and alignments):
>> Tricorn_PDZ  Tricorn protease PDZ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.0   0.0    0.0013       5.7      45      67 ..       2      24 ..       1      42 [. 0.84
   2 ?    1.8   0.1     0.052   2.3e+02      26      70 ..      45      90 ..      38      99 .. 0.72
   3 !   14.1   0.0   7.6e-06     0.034      26      59 ..     113     146 ..     105     160 .. 0.87

  Alignments for each domain:
  == domain 1  score: 7.0 bits;  conditional E-value: 0.0013
                 EEEEETTEE-BTTB-HHHHHHTT CS
  Tricorn_PDZ 45 lilavdgepvskekgiaelLvgk 67
                 li+av+g++v++ +++ e+L+ +
   KOO22117.1  2 LIKAVNGKTVGSANEVTEMLMAA 24
                 699****************9865 PP

  == domain 2  score: 1.8 bits;  conditional E-value: 0.052
                 SSS-B-GGGGGS---.TT-EEEEETTEE-BTT..B-HHHHHHTTTTS CS
  Tricorn_PDZ 26 deearSPLaepGvnvreGdlilavdgepvske..kgiaelLvgkagk 70
                  +e+rS L +  v++r+ + ++av  +p +++  +g++e+ + ka+k
   KOO22117.1 45 ASEERSTLGTESVDARV-ASMTAVQEQPEQTVsaTGFEEVVLRKANK 90
                 56889999999999877.55788888775543116778887777775 PP

  == domain 3  score: 14.1 bits;  conditional E-value: 7.6e-06
                  SSS-B-GGGGGS---.TT-EEEEETTEE-BTTB- CS
  Tricorn_PDZ  26 deearSPLaepGvnvreGdlilavdgepvskekg 59 
                  +e +++++ae  v++++G li+av+gepv++  +
   KOO22117.1 113 QELKKGSIAEASVALKKGMLIKAVNGEPVGSAID 146
                  56678999*********************98766 PP

>> PDZ  PDZ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   0.0      0.38   1.7e+03      50      69 ..       3      22 ..       2      32 .. 0.61
   2 !   19.8   0.1   1.7e-07   0.00078      12      61 ..      94     144 ..      82     154 .. 0.78

  Alignments for each domain:
  == domain 1  score: -0.6 bits;  conditional E-value: 0.38
                EEEETTEETTTSHHHHHHHH CS
         PDZ 50 IlsvNgvdvenvsheeavqa 69
                I +vNg++v + ++ + +++
  KOO22117.1  3 IKAVNGKTVGSANEVTEMLM 22
                66899999988866554444 PP

  == domain 2  score: 19.8 bits;  conditional E-value: 1.7e-07
                 SSEEEEEETTSSSSSSEEEEEECTTSHHHHHT.SSTTEEEEEETTEETTTS CS
         PDZ  12 lGfslkggsdqrgdkgifvsevlpggaaeadg.lkvGDkIlsvNgvdvenv 61 
                 lG+   g    +g ++++v+e+ +g+ aea+  lk+G  I +vNg++v + 
  KOO22117.1  94 LGLVCNGRLVSDGTTEVVVQELKKGSIAEASVaLKKGMLIKAVNGEPVGSA 144
                 555555554555789*******************************99766 PP

>> PDZ_2  PDZ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.0   0.0     0.028   1.3e+02      38      61 ..       3      26 ..       2      32 .. 0.86
   2 ?    9.9   0.1   0.00021      0.93      12      58 ..     106     153 ..      63     159 .. 0.84

  Alignments for each domain:
  == domain 1  score: 3.0 bits;  conditional E-value: 0.028
                EEEETTB--SSHHHHHHHHHTS-T CS
       PDZ_2 38 ilkvdgkkvksledlislllkkkp 61
                i +v+gk+v s  ++ ++l+++ p
  KOO22117.1  3 IKAVNGKTVGSANEVTEMLMAAFP 26
                679*************99998777 PP

  == domain 2  score: 9.9 bits;  conditional E-value: 0.00021
                 -..-EEEEEE-TTSGGGGT..--TT-EEEEETTB--SSHHHHHHHHHT CS
       PDZ_2  12 dtggvlvvsVkeggPaakag.lkagDvilkvdgkkvksledlislllk 58 
                 +t++v+v++ k+g+ a+++  lk+g  i +v+g +v s  d   ++ +
  KOO22117.1 106 GTTEVVVQELKKGSIAEASVaLKKGMLIKAVNGEPVGSAIDATAKMKA 153
                 3779************99999***************998887777665 PP

>> Acylphosphatase  Acylphosphatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0     4e-05      0.18       9      62 ..      75     132 ..      74     150 .. 0.84

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 4e-05
  Acylphosphatase   9 VQgvgFRkfvrrlAkelglkGyvrN...lsdgsVeivaeg.eeekvekfleelksgpp 62 
                      V   gF + v r+A++  + G v+N    sdg+ e+v++  ++ ++++   +lk+g+ 
       KOO22117.1  75 VSATGFEEVVLRKANKADVLGLVCNgrlVSDGTTEVVVQElKKGSIAEASVALKKGML 132
                      56679********************555589*******99778889999999988875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (169 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       362  (0.0201908); expected 358.6 (0.02)
Passed bias filter:                      242  (0.0134977); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.39u 0.28s 00:00:00.67 Elapsed: 00:00:00.43
# Mc/sec: 1178.40
//
Query:       KOO22118.1  [L=187]
Description: hypothetical protein Ctob_005806, partial [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
     0.0013   18.5   0.0     0.0022   17.8   0.0    1.4  1  RRM_1     RNA recognition motif. (a.k.a. RRM, RBD, or RNP dom
  ------ inclusion threshold ------
       0.14   11.9   0.1       0.23   11.2   0.1    1.2  1  DUF3328   Domain of unknown function (DUF3328)


Domain annotation for each model (and alignments):
>> RRM_1  RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.8   0.0   2.5e-07    0.0022       6      59 ..      83     137 ..      78     147 .. 0.91

  Alignments for each domain:
  == domain 1  score: 17.8 bits;  conditional E-value: 2.5e-07
                 ETTTSSHHHHHHHHHTTSCEEEEEEEEE.TTTSEEEEEEEEESSHHHHHHHHHHH CS
       RRM_1   6 LppdvteeeLkelFskfGpiksiklvrd.etgkskgfafVeFeskedAekAleal 59 
                 + p+++ + ++e++ +fG+i+ ++l+ d + g s + a V +    dA++Alea 
  KOO22118.1  83 FGPTLSPRHIYEFLLQFGSIELFRLYIDpASGLSLRAAGVVYRHAADAARALEAA 137
                 567889999*******************************************975 PP

>> DUF3328  Domain of unknown function (DUF3328)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.1   2.6e-05      0.23     153     184 ..       9      40 ..       2      43 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 2.6e-05
     DUF3328 153 glsegeeeedrvHleHCidiLrqsimChaDvt 184
                   se eeee++  ++HC  i+rq++  + D++
  KOO22118.1   9 DESEREEEEYQERTAHCAAIIRQALDATPDLD 40 
                 556777888999*************9999975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (187 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       520  (0.0290033); expected 358.6 (0.02)
Passed bias filter:                      414  (0.0230911); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.40u 0.22s 00:00:00.62 Elapsed: 00:00:00.37
# Mc/sec: 1513.15
//
Query:       KOO22119.1  [L=452]
Description: hypothetical protein Ctob_005799 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.9e-07   29.5   0.0    7.2e-07   28.6   0.0    1.4  1  Nup96     Nuclear protein 96


Domain annotation for each model (and alignments):
>> Nup96  Nuclear protein 96
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.6   0.0     4e-11   7.2e-07       3     105 ..     201     306 ..     200     321 .. 0.75

  Alignments for each domain:
  == domain 1  score: 28.6 bits;  conditional E-value: 4e-11
       Nup96   3 ifalLsghqveeAcelAldagdlrLAtllsqaggddevrkdlqeQleeWreekvdseieeellkiyelLaGnvlvsegkkkke.....stinvle..gl 94 
                 ++ lL + + +eAc++Ald g   L  ll+q +g   vr+dl +Ql++W+ e   + ++e+l + + lLaG v   ++  +k      s ++  +  g 
  KOO22119.1 201 VWPLLKAADSAEACKAALDDGRAYLGALLAQPTG--CVRDDLMAQLRSWEGEPP-EMVPEPLKRYFGLLAGTVSSWNEGPGKLeisweSFVDA-HlrGA 295
                 56689999**********************9887..68***********99988.88****************43333332224566433322.22466 PP

       Nup96  95 dWkralglhlw 105
                  +  alg + +
  KOO22119.1 296 RFDHALGCRAF 306
                 66667666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (452 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       350  (0.0195214); expected 358.6 (0.02)
Passed bias filter:                      247  (0.0137766); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.50u 0.21s 00:00:00.71 Elapsed: 00:00:00.41
# Mc/sec: 3327.44
//
Query:       KOO22120.1  [L=429]
Description: checkpoint and tumor suppressor protein 2, partial [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    4.8e-14   52.5   0.0    8.3e-14   51.7   0.0    1.4  1  FHA           FHA domain
    1.1e-06   28.3   0.0    1.7e-06   27.7   0.0    1.3  1  Drf_GBD       Diaphanous GTPase-binding Domain
     0.0059   16.9   0.0       0.86   10.0   0.0    2.9  2  Yop-YscD_cpl  Inner membrane component of T3SS, cytoplasmic d
  ------ inclusion threshold ------
      0.016   15.2   0.0       0.17   11.8   0.0    2.2  2  DUF3361       Domain of unknown function (DUF3361)


Domain annotation for each model (and alignments):
>> FHA  FHA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.7   0.0   1.8e-17   8.3e-14       2      68 ..      31     112 ..      30     113 .. 0.97

  Alignments for each domain:
  == domain 1  score: 51.7 bits;  conditional E-value: 1.8e-17
                 EEESSTTSSEETTSTTSTTTEEEEEEETT................CEEEEEEEESSSSSEEETTEEESTTSEEEE-TTEEEEE CS
         FHA   2 tiGRssdcdivlddpsiSrkHalikfdkg................sgkvyleDlgSknGtfvNgqrigkgepveLksgdviel 68 
                 +iGR+++++ v ++p++S  H+ i+ + +                  +v+l Dl S+nGtf+N+q++gkg++v+ k++d+i +
  KOO22120.1  31 VIGRDPKSNEVYNNPQLSSTHCKIVLKRPseesraaadeddgdepIAEVWLYDL-SSNGTFLNHQKVGKGNSVRMKQNDEIGF 112
                 79**********************9999999**************99******9.9*************************87 PP

>> Drf_GBD  Diaphanous GTPase-binding Domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.7   0.0   3.8e-10   1.7e-06     101     187 ..     234     320 ..     191     321 .. 0.91

  Alignments for each domain:
  == domain 1  score: 27.7 bits;  conditional E-value: 3.8e-10
     Drf_GBD 101 vkrFieleGlvaLlnvLskinekkaeeeedlkkeyeiikClKalmNnkvGldavlahksvikllaqsldserlktrklvlelLtalc 187
                 +k+F+ ++G  aLl+v  ++++k   +  dl +    +  lK l+N   G+ + l +  ++++++ +l   + k+ +++l+lLt l+
  KOO22120.1 234 MKKFVACDGPQALLDVIAEVQAKPTPSYSDLGILEGTLDALKELLNAPEGARYLLDNAGAVDSIVAVLRVGEGKVLTKALQLLTQLV 320
                 589*********************************************************************************986 PP

>> Yop-YscD_cpl  Inner membrane component of T3SS, cytoplasmic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.0   0.0   0.00019      0.86      11      47 ..      22      58 ..      21     115 .. 0.79
   2 ?   -2.2   0.0       1.2   5.2e+03      41      83 ..     299     345 ..     292     349 .. 0.69

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.00019
                  EEEETTEEEEEES-TT-SEE---TTS-TT-EEEEEET CS
  Yop-YscD_cpl 11 eveLeegevviGsdedcDivLsDkevsrkhlkLevee 47
                  ++eL+++e+viG+d++++ v + +++s+ h+k+ ++ 
    KOO22120.1 22 RIELTSTEFVIGRDPKSNEVYNNPQLSSTHCKIVLKR 58
                  57999***********99999**********998763 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 1.2
                   EEEEEETTEEEEEE-CESS--EETTEE-S..ECC..--TTSEEEETT CS
  Yop-YscD_cpl  41 lkLeveeesvrledlgsrngllvngerve..ele..lrpgdvlelGt 83 
                   ++L+v e +v  + l+   +l+vn +  e  + e  lr+  +++ G 
    KOO22120.1 299 AVLRVGEGKVLTKALQLLTQLVVNARDTElpSIEaaLRRPHKYTAGG 345
                   67888888888888888888999988887542234576666666665 PP

>> DUF3361  Domain of unknown function (DUF3361)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   3.8e-05      0.17      67     141 ..     262     336 ..     235     340 .. 0.87
   2 ?    0.6   0.1       0.1   4.7e+02     109     146 ..     365     400 ..     361     405 .. 0.78

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 3.8e-05
     DUF3361  67 adasilqrslaiLesivlnsselyelvekevtlesLiehLqssnqeiqtnalaLlnALllkaddskrkelaetls 141
                  d  il+  l+ L+++  + +    l++++  ++s+++ L++ + ++ t+al Ll+ L+++a+d++  ++ ++l+
  KOO22120.1 262 SDLGILEGTLDALKELLNAPEGARYLLDNAGAVDSIVAVLRVGEGKVLTKALQLLTQLVVNARDTELPSIEAALR 336
                 5678999999*****99999999999**************************************99888887765 PP

  == domain 2  score: 0.6 bits;  conditional E-value: 0.1
     DUF3361 109 snqeiqtnalaLlnALllkaddskrkelaetlskkqlr 146
                 +++ + t+al L n+Ll+ ++  +r +lae l + ++ 
  KOO22120.1 365 AEAGVATHALILANTLLTLSE--QRAKLAEELMSDAVE 400
                 566789999*******99887..788888888777665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (429 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       306  (0.0170673); expected 358.6 (0.02)
Passed bias filter:                      268  (0.0149478); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.50u 0.25s 00:00:00.75 Elapsed: 00:00:00.43
# Mc/sec: 2971.01
//
Query:       KOO22121.1  [L=291]
Description: calmodulin-like 5 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    9.1e-14   51.7   0.9    2.4e-11   43.9   0.1    2.5  2  EF-hand_7     EF-hand domain pair
    1.2e-11   43.3   0.7    0.00014   21.2   0.0    2.9  2  EF-hand_1     EF hand
    1.3e-09   37.2   0.3    0.00011   21.8   0.0    2.9  2  EF-hand_6     EF-hand domain
    4.1e-09   35.5   9.0    0.00042   19.7   0.4    4.4  6  EF-hand_5     EF hand
    6.4e-08   32.3   0.8    2.8e-07   30.3   0.1    2.3  2  EF-hand_8     EF-hand domain pair
    6.2e-06   26.5   0.0    1.2e-05   25.5   0.0    1.4  1  EF-hand_9     EF-hand domain
  ------ inclusion threshold ------
      0.075   13.4   0.0        0.3   11.4   0.0    2.0  1  SPARC_Ca_bdg  Secreted protein acidic and rich in cysteine Ca


Domain annotation for each model (and alignments):
>> EF-hand_7  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.0   0.1    0.0064        16      18      57 ..      73     140 ..      71     156 .. 0.81
   2 !   43.9   0.1   9.3e-15   2.4e-11       6      70 ..     205     264 ..     202     265 .. 0.93

  Alignments for each domain:
  == domain 1  score: 6.0 bits;  conditional E-value: 0.0064
   EF-hand_7  18 yldkeellrllrkifqga...........................gegsklsd.eelellfkefDtdk 57 
                 +l+k+e++ l rk++                              +++++l++ +    +f++ D++ 
  KOO22121.1  73 RLSKSEYMTLARKFYLISmieegmadqldsngwrtdaeqdfaadaHRKDHLTKsDFFASWFECADLHT 140
                 6899998889999988889999999999999999999999999997888877745699******9875 PP

  == domain 2  score: 43.9 bits;  conditional E-value: 9.3e-15
   EF-hand_7   6 eaFkelDtdgdgyldkeellrllrkifqgagegsklsdeelellfkefDtdkdGvisfdEFlkly 70 
                  aFk lD+dg g+++++el+ +l k     +  s+ s+ e++ l++ +D ++dG++ +dEF+++ 
  KOO22121.1 205 KAFKVLDKDGGGSISVSELKAALVK-----EGSSEASEAEIQSLIDQVDVNGDGELQLDEFETFW 264
                 46*******************9987.....99999999***********************9985 PP

>> EF-hand_1  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.2   0.0   5.3e-08   0.00014       3      27 ..     204     228 ..     202     230 .. 0.93
   2 !   19.5   0.4   1.9e-07   0.00048       1      28 [.     239     266 ..     239     267 .. 0.93

  Alignments for each domain:
  == domain 1  score: 21.2 bits;  conditional E-value: 5.3e-08
                 HHHHHHHTTTSSSEEEHHHHHHHHH CS
   EF-hand_1   3 keiFrefDkDgdGkIdfeEfkellk 27 
                 +++F+++DkDg G I+ +E+k++l 
  KOO22121.1 204 DKAFKVLDKDGGGSISVSELKAALV 228
                 89********************986 PP

  == domain 2  score: 19.5 bits;  conditional E-value: 1.9e-07
                 HHHHHHHHHTTTSSSEEEHHHHHHHHHH CS
   EF-hand_1   1 elkeiFrefDkDgdGkIdfeEfkellkk 28 
                 e++ +++ +D++gdG + ++Ef +++k 
  KOO22121.1 239 EIQSLIDQVDVNGDGELQLDEFETFWKL 266
                 78999*******************9985 PP

>> EF-hand_6  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.8   0.0   4.4e-08   0.00011       3      27 ..     204     228 ..     202     233 .. 0.90
   2 !   12.3   0.2   5.1e-05      0.13       2      25 ..     240     263 ..     239     268 .. 0.86

  Alignments for each domain:
  == domain 1  score: 21.8 bits;  conditional E-value: 4.4e-08
   EF-hand_6   3 reaFklfDkdgdGkidaeElrkalr 27 
                 ++aFk +Dkdg G+i+ +El++al 
  KOO22121.1 204 DKAFKVLDKDGGGSISVSELKAALV 228
                 689********************97 PP

  == domain 2  score: 12.3 bits;  conditional E-value: 5.1e-05
   EF-hand_6   2 lreaFklfDkdgdGkidaeElrka 25 
                 ++++ ++ D++gdG++  +E+  +
  KOO22121.1 240 IQSLIDQVDVNGDGELQLDEFETF 263
                 77888999*************876 PP

>> EF-hand_5  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.0      0.78     2e+03      15      24 ..      73      82 ..      73      83 .. 0.86
   2 ?   -2.9   0.1       2.3     6e+03       6      12 ..      98     104 ..      98     104 .. 0.85
   3 ?   -0.3   0.0      0.34   8.7e+02       3      10 ..     131     138 ..     129     138 .. 0.83
   4 ?   -1.9   0.0       1.1   2.9e+03      14      23 ..     145     154 ..     145     154 .. 0.88
   5 !   17.8   0.0   6.5e-07    0.0017       3      24 ..     205     227 ..     204     228 .. 0.88
   6 !   19.7   0.4   1.6e-07   0.00042       2      24 ..     241     263 ..     240     264 .. 0.90

  Alignments for each domain:
  == domain 1  score: -1.4 bits;  conditional E-value: 0.78
                CE-HHHHHHH CS
   EF-hand_5 15 kIskeELktl 24
                ++sk+E +tl
  KOO22121.1 73 RLSKSEYMTL 82
                68****9987 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 2.3
                 HHH-SS- CS
   EF-hand_5   6 qaiDlNg 12 
                 +++D Ng
  KOO22121.1  98 DQLDSNG 104
                 599**98 PP

  == domain 3  score: -0.3 bits;  conditional E-value: 0.34
                 HHHHHH-S CS
   EF-hand_5   3 dtFqaiDl 10 
                  +F+++Dl
  KOO22121.1 131 SWFECADL 138
                 69*****6 PP

  == domain 4  score: -1.9 bits;  conditional E-value: 1.1
                 SCE-HHHHHH CS
   EF-hand_5  14 GkIskeELkt 23 
                 G +s+ EL++
  KOO22121.1 145 GAVSVLELQE 154
                 889*****96 PP

  == domain 5  score: 17.8 bits;  conditional E-value: 6.5e-07
                 HHHHHH-SS-SSCE-HHHHHH.H CS
   EF-hand_5   3 dtFqaiDlNgDGkIskeELkt.l 24 
                 ++F+ +D++g G Is++ELk+ l
  KOO22121.1 205 KAFKVLDKDGGGSISVSELKAaL 227
                 57*****************9855 PP

  == domain 6  score: 19.7 bits;  conditional E-value: 1.6e-07
                 HHHHHHH-SS-SSCE-HHHHHHH CS
   EF-hand_5   2 kdtFqaiDlNgDGkIskeELktl 24 
                 + + +++D+NgDG +  +E++t+
  KOO22121.1 241 QSLIDQVDVNGDGELQLDEFETF 263
                 66789****************98 PP

>> EF-hand_8  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   0.0      0.48   1.2e+03      35      54 ..     115     134 ..     113     135 .. 0.81
   2 !   30.3   0.1   1.1e-10   2.8e-07       2      53 ..     215     265 ..     207     266 .. 0.90

  Alignments for each domain:
  == domain 1  score: -0.6 bits;  conditional E-value: 0.48
   EF-hand_8  35 fDtdgdGkisfeEFcvller 54 
                 +D  ++ ++++ +F++ +++
  KOO22121.1 115 ADAHRKDHLTKSDFFASWFE 134
                 577777889999***99997 PP

  == domain 2  score: 30.3 bits;  conditional E-value: 1.1e-10
   EF-hand_8   2 kgkItreelrrilrilglkk..glseeevdilfrefDtdgdGkisfeEFcvlle 53 
                 +g+I++ el+ +l   ++++    se e+++l++ +D +gdG + ++EF  +++
  KOO22121.1 215 GGSISVSELKAAL---VKEGssEASEAEIQSLIDQVDVNGDGELQLDEFETFWK 265
                 79*********99...4445567**************************87776 PP

>> EF-hand_9  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.5   0.0   4.7e-09   1.2e-05       2      60 ..     205     262 ..     204     265 .. 0.95

  Alignments for each domain:
  == domain 1  score: 25.5 bits;  conditional E-value: 4.7e-09
   EF-hand_9   2 tvFevcDtqktGrVpvsrlidyLravtaqdpeeseLeelakelDPdgedasvdldtflr 60 
                   F+v D +  G + vs+l++ L + ++ + +e+e+++l  ++D +g  ++++ld f +
  KOO22121.1 205 KAFKVLDKDGGGSISVSELKAALVKEGSSEASEAEIQSLIDQVDVNGD-GELQLDEFET 262
                 57*******************************************999.*******986 PP

>> SPARC_Ca_bdg  Secreted protein acidic and rich in cysteine Ca binding region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   0.00012       0.3      34     110 ..     170     260 ..     134     262 .. 0.63

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00012
  SPARC_Ca_bdg  34 k.........ehleelekkeeeknlkeckepvaw..kFsklDtnsdkvlsksELapl...raplvklehCikpflescDadkdkkislkEw 110
                              + ++ +k+   ++++  + ++ +   F+ lD++  +++s sEL++    + +    e  i+ ++++ D++ d++++l E+
    KOO22121.1 170 VanqekakrhAAAKAAMKRLGFSKKSGLTPSMSYdkAFKVLDKDGGGSISVSELKAAlvkEGSSEASEAEIQSLIDQVDVNGDGELQLDEF 260
                   03333333332233333333333333333444442269****************8751222345678999********************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (291 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       750  (0.0418317); expected 358.6 (0.02)
Passed bias filter:                      497  (0.0277205); expected 358.6 (0.02)
Passed Vit filter:                        47  (0.00262145); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.46u 0.25s 00:00:00.71 Elapsed: 00:00:00.40
# Mc/sec: 2177.51
//
Query:       KOO22122.1  [L=430]
Description: peptidase leucyl aminopeptidase domain-containing protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    5.6e-53  180.2   0.0    1.1e-52  179.3   0.0    1.5  1  Peptidase_M17  Cytosol aminopeptidase family, catalytic domai
  ------ inclusion threshold ------
       0.13   12.2   0.0       0.36   10.8   0.0    1.6  1  DUF3318        Protein of unknown function (DUF3318)


Domain annotation for each model (and alignments):
>> Peptidase_M17  Cytosol aminopeptidase family, catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  179.3   0.0   1.2e-56   1.1e-52       2     234 ..      78     327 ..      77     423 .. 0.75

  Alignments for each domain:
  == domain 1  score: 179.3 bits;  conditional E-value: 1.2e-56
                    HHHHHHHS-TTTS-HHHHHHHHHHHHTCCTEEEEEEEECHHHHHTT-HHHHHHHTTS...SSS--EEEEEEEE-SSTTSEEEEEEEEEEEEEE-TT CS
  Peptidase_M17   2 lardlvntpaneltpeklaeeaeelakeagkvevevldeeeleekgmgallaVgkgS...eeepprlveleykgakekekklalVGKGitfDtGGl 94 
                    lard+ +  +++++p klae+++++ +eag + vevld+ +  + ++++l+aV+++S   e+++p++v+l ++g+++ e+++++ GKG+t+D GG+
     KOO22122.1  78 LARDIGSGDPERMSPLKLAEYVRSACEEAG-IAVEVLDDLATLQAEYPLLHAVARASievERHRPAVVRLVWSGSGKIERTVCIAGKGVTYDVGGA 172
                    89*******************998878887.9*************************754379********************************* PP

                    SS--HHHHTTGGGGGHHHHHHHHHHHHHHH....HT-SSEEEEEEEEEEE--STTSTTTTEEEE-TTS-EEEES-TTGCHHHHHHHHHHHHH.... CS
  Peptidase_M17  95 slKpsasmeemkaDmgGAAavlgalkavae....lklpvnvvavlplaeNmisgkavkpgdvitamnGktvevlnTDaEGRLvLADalayae.... 182
                    ++K + sm++m++D++GAAa++g++  +a+    l   ++vv+ l++++N+i+ +a+  ++vi  + Gk+v + nTDaEGRLvLAD+l++ +    
     KOO22122.1 173 DIKVGGSMAGMRRDKCGAAAAAGFILSCARaapeLTKGLKVVVELGCVRNSIGADAFVADEVISGHAGKRVLIGNTDAEGRLVLADVLSHLRsrvt 268
                    ********************99997766663333566699**************************************************974444 PP

                    ...GCT--SEEEEEE---THHHHHHTTTS....EEEEES-HHHHHHHHHHHHHHS-EEE CS
  Peptidase_M17 183 ...ekekpdlivdvATLTgavvvalGkka....aglfsnddelaeelekageeagervw 234
                       + +   +++ +ATLTg++  ++G +a    +g+      la +l++ag++ g  + 
     KOO22122.1 269 aqpDVYPQPVLLSLATLTGHATRSFGPYAcatdSGAARAAGGLAPRLAHAGARLGQPLE 327
                    43323334689***************987333344444445677777777777776544 PP

>> DUF3318  Protein of unknown function (DUF3318)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0     4e-05      0.36      17      85 ..      82     149 ..      68     163 .. 0.83

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 4e-05
     DUF3318  17 ivrakpeqseviqaefelrwavtrrpilinfdlWlklsalqrdllllrevasl.alakwfrtdvyqvall 85 
                 i   +pe++  ++  + +r a +++   i ++ +  l+ lq +++ll++va+  ++++  r+ v ++++ 
  KOO22122.1  82 IGSGDPERMSPLKLAEYVRSACEEA--GIAVEVLDDLATLQAEYPLLHAVARAsIEVERHRPAVVRLVWS 149
                 6678999999999999999999666..899999******************9735778888888888875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (430 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       212  (0.0118244); expected 358.6 (0.02)
Passed bias filter:                      177  (0.00987227); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.46u 0.24s 00:00:00.70 Elapsed: 00:00:00.39
# Mc/sec: 3291.61
//
Query:       KOO22123.1  [L=293]
Description: protein nlrc3 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.5e-24   82.4  16.6    0.00061   19.6   0.2    8.2  8  LRR_6     Leucine Rich repeat
    1.6e-05   24.8   1.8         17    6.4   0.0    6.6  6  LRR_1     Leucine Rich Repeat
  ------ inclusion threshold ------
      0.025   15.0   8.3       0.53   10.8   0.0    4.8  6  LRR_4     Leucine Rich repeats (2 copies)


Domain annotation for each model (and alignments):
>> LRR_6  Leucine Rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.2   0.1      0.17     1e+03       7      24 .]       2      19 ..       1      19 [. 0.84
   2 ?    3.5   0.0     0.015        91       3      23 ..      27      47 ..      25      48 .. 0.82
   3 !   13.0   0.0   1.4e-05     0.084       2      23 ..      63      84 ..      62      85 .. 0.93
   4 !    7.8   0.0   0.00062       3.7       5      23 ..      96     114 ..      94     115 .. 0.89
   5 !   19.6   0.0     1e-07   0.00062       1      24 []     120     143 ..     120     143 .. 0.96
   6 !   14.0   0.1   6.6e-06     0.039       5      24 .]     152     171 ..     148     171 .. 0.90
   7 !   19.6   0.2     1e-07   0.00061       3      24 .]     178     199 ..     176     199 .. 0.90
   8 !    9.1   0.1   0.00024       1.4       2      23 ..     205     226 ..     205     227 .. 0.89

  Alignments for each domain:
  == domain 1  score: 0.2 bits;  conditional E-value: 0.17
       LRR_6  7 eLdLsgNdIgDeGaeaLa 24
                +L+L   +Ig  Ga+aLa
  KOO22123.1  2 TLSLGAANIGRLGAIALA 19
                577777899999****98 PP

  == domain 2  score: 3.5 bits;  conditional E-value: 0.015
       LRR_6  3 thLteLdLsgNdIgDeGaeaL 23
                +++  L L +N Ig eG  aL
  KOO22123.1 27 NTVVNLALDWNAIGMEGSVAL 47
                6788899*******9996665 PP

  == domain 3  score: 13.0 bits;  conditional E-value: 1.4e-05
       LRR_6  2 nthLteLdLsgNdIgDeGaeaL 23
                nt L+ L L  + +gD+Ga+aL
  KOO22123.1 63 NTALRVLGLERCSVGDAGAIAL 84
                888******************9 PP

  == domain 4  score: 7.8 bits;  conditional E-value: 0.00062
       LRR_6   5 LteLdLsgNdIgDeGaeaL 23 
                 L+e  L gN+Ig +Ga  L
  KOO22123.1  96 LREIRLEGNGIGPAGAARL 114
                 8999***********9765 PP

  == domain 5  score: 19.6 bits;  conditional E-value: 1e-07
       LRR_6   1 snthLteLdLsgNdIgDeGaeaLa 24 
                 +nthL+ L+L+ N Ig +Ga+ La
  KOO22123.1 120 TNTHLRMLNLALNPIGPAGAIELA 143
                 59*******************997 PP

  == domain 6  score: 14.0 bits;  conditional E-value: 6.6e-06
       LRR_6   5 LteLdLsgNdIgDeGaeaLa 24 
                 L+ LdL g+++gD+G  aLa
  KOO22123.1 152 LERLDLGGCELGDAGTVALA 171
                 99*************99997 PP

  == domain 7  score: 19.6 bits;  conditional E-value: 1e-07
       LRR_6   3 thLteLdLsgNdIgDeGaeaLa 24 
                   L++L+L+gN+Ig eGa aLa
  KOO22123.1 178 LALRTLNLQGNGIGAEGAHALA 199
                 559***************9997 PP

  == domain 8  score: 9.1 bits;  conditional E-value: 0.00024
       LRR_6   2 nthLteLdLsgNdIgDeGaeaL 23 
                 n++L++ +L+ N++g + a+aL
  KOO22123.1 205 NPSLRSINLRLNGLGHQAATAL 226
                 89************98888777 PP

>> LRR_1  Leucine Rich Repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.7   0.1       0.1   6.2e+02       2      10 ..      96     104 ..      65     116 .. 0.63
   2 ?   -0.2   0.0      0.43   2.6e+03       1      12 [.     123     134 ..     123     142 .. 0.81
   3 !    6.4   0.0    0.0029        17       2      13 ..     152     163 ..     151     174 .. 0.88
   4 !    5.2   0.0    0.0076        45       2      13 ..     180     191 ..     179     201 .. 0.78
   5 ?    1.5   0.0      0.12   7.4e+02       1      12 [.     207     218 ..     207     226 .. 0.81
   6 ?    0.4   0.1      0.28   1.7e+03       1      11 [.     242     252 ..     242     264 .. 0.83

  Alignments for each domain:
  == domain 1  score: 1.7 bits;  conditional E-value: 0.1
       LRR_1   2 LrhLdLsnn 10 
                 Lr++ L++n
  KOO22123.1  96 LREIRLEGN 104
                 455555555 PP

  == domain 2  score: -0.2 bits;  conditional E-value: 0.43
       LRR_1   1 nLrhLdLsnnpl 12 
                 +Lr L+L  np+
  KOO22123.1 123 HLRMLNLALNPI 134
                 5999***99997 PP

  == domain 3  score: 6.4 bits;  conditional E-value: 0.0029
       LRR_1   2 LrhLdLsnnpll 13 
                 L++LdL+++ l+
  KOO22123.1 152 LERLDLGGCELG 163
                 9********984 PP

  == domain 4  score: 5.2 bits;  conditional E-value: 0.0076
       LRR_1   2 LrhLdLsnnpll 13 
                 Lr+L+L +n ++
  KOO22123.1 180 LRTLNLQGNGIG 191
                 9********985 PP

  == domain 5  score: 1.5 bits;  conditional E-value: 0.12
       LRR_1   1 nLrhLdLsnnpl 12 
                 +Lr+++L+ n l
  KOO22123.1 207 SLRSINLRLNGL 218
                 69*****98887 PP

  == domain 6  score: 0.4 bits;  conditional E-value: 0.28
       LRR_1   1 nLrhLdLsnnp 11 
                 +L++L L++n 
  KOO22123.1 242 RLEELLLEHNL 252
                 699*****996 PP

>> LRR_4  Leucine Rich repeats (2 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.4   0.0      0.16   9.7e+02       3      33 ..      66     104 ..      64     111 .. 0.57
   2 ?    2.7   0.1      0.03   1.8e+02      19      37 ..     118     135 ..      96     144 .. 0.67
   3 ?    3.8   0.0     0.014        82       2      33 ..     123     160 ..     122     171 .. 0.56
   4 ?   10.8   0.0   8.8e-05      0.53       3      33 ..     152     188 ..     150     193 .. 0.83
   5 ?    8.6   0.6   0.00042       2.5       3      32 ..     180     214 ..     178     220 .. 0.77
   6 ?   -0.9   0.3      0.42   2.5e+03       2      13 ..     242     253 ..     242     260 .. 0.76

  Alignments for each domain:
  == domain 1  score: 0.4 bits;  conditional E-value: 0.16
                 --EEE--SS---E-S-..HH.....H.-TT--EEE-.-S CS
       LRR_4   3 LevLdLsnNqltdipl..le.....k.lpnLkeLdLsgN 33 
                 L+vL L  + + d +   l+     + l  L+e+ L gN
  KOO22123.1  66 LRVLGLERCSVGDAGAiaLGtalsdNpLLPLREIRLEGN 104
                 666767666666666644224343333444888888777 PP

  == domain 2  score: 2.7 bits;  conditional E-value: 0.03
                 HHH-TT--EEE-.-S---- CS
       LRR_4  19 leklpnLkeLdLsgNnlit 37 
                 le +++L+ L+L   n+i+
  KOO22123.1 118 LETNTHLRMLNL-ALNPIG 135
                 556888999998.533654 PP

  == domain 3  score: 3.8 bits;  conditional E-value: 0.014
                 S--EEE--SS---E-S-......HHH-TT--EEE-.-S CS
       LRR_4   2 nLevLdLsnNqltdipl......leklpnLkeLdLsgN 33 
                 +L+ L+L+ N +   +       l+ +  L+ LdL g+
  KOO22123.1 123 HLRMLNLALNPIGPAGAielargLRRNAALERLDLGGC 160
                 67777777556654444332222224556777777666 PP

  == domain 4  score: 10.8 bits;  conditional E-value: 8.8e-05
                 --EEE--SS---E-S-......HHH-TT--EEE-.-S CS
       LRR_4   3 LevLdLsnNqltdipl......leklpnLkeLdLsgN 33 
                 Le LdL+++ l d +       l+++  L++L+L gN
  KOO22123.1 152 LERLDLGGCELGDAGTvalataLRSNLALRTLNLQGN 188
                 99***********999885555558888******988 PP

  == domain 5  score: 8.6 bits;  conditional E-value: 0.00042
                 --EEE--SS---E-S-..HH....H-TT--EEE-.- CS
       LRR_4   3 LevLdLsnNqltdipl..le....klpnLkeLdLsg 32 
                 L++L+L++N +   +   l+     +p+L++++L +
  KOO22123.1 180 LRTLNLQGNGIGAEGAhaLAsmlrINPSLRSINL-R 214
                 9***********8777773355535999***999.4 PP

  == domain 6  score: -0.9 bits;  conditional E-value: 0.42
                 S--EEE--SS-- CS
       LRR_4   2 nLevLdLsnNql 13 
                 +Le+L L +N +
  KOO22123.1 242 RLEELLLEHNLV 253
                 599999999875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (293 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       198  (0.0110436); expected 358.6 (0.02)
Passed bias filter:                      145  (0.00808746); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.41u 0.20s 00:00:00.61 Elapsed: 00:00:00.36
# Mc/sec: 2441.36
//
Query:       KOO22124.1  [L=3105]
Description: leucine rich repeat -containing protein, partial [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.7e-14   53.7  41.2    0.00043   20.6   1.0    9.9 10  LRR_4      Leucine Rich repeats (2 copies)
    3.1e-14   52.5  36.1    4.3e-07   29.6   6.5    8.9  8  LRR_8      Leucine rich repeat
    3.7e-11   43.3   0.0    9.2e-11   42.0   0.0    1.7  1  Roc        Ras of Complex, Roc, domain of DAPkinase
    1.1e-09   37.6  50.4      0.038   14.0   0.5   14.0 13  LRR_6      Leucine Rich repeat
      2e-07   30.8   0.0    4.3e-07   29.7   0.0    1.6  1  Ras        Ras family
    0.00039   20.6  21.3         30    5.7   0.0    9.7  9  LRR_1      Leucine Rich Repeat
     0.0057   15.9   4.4       0.01   15.0   4.4    1.3  1  Med3       Mediator complex subunit 3 fungal
     0.0071   15.8   0.0      0.017   14.6   0.0    1.6  1  Arf        ADP-ribosylation factor family
  ------ inclusion threshold ------
      0.014   15.8   0.0      0.061   13.7   0.0    2.1  1  AAA        ATPase family associated with various cellular act
      0.022   14.3   0.8       0.11   12.0   0.8    2.2  1  LRR_9      Leucine-rich repeat
      0.025   13.9   0.0      0.044   13.1   0.0    1.4  1  Gtr1_RagA  Gtr1/RagA G protein conserved region
      0.089   13.1   0.0       0.33   11.3   0.0    2.0  1  AAA_19     AAA domain
       0.12   12.2   0.0       0.23   11.2   0.0    1.4  1  COR        C-terminal of Roc, COR, domain
       0.18   12.2   0.1       0.52   10.7   0.1    1.7  1  TruB_N     TruB family pseudouridylate synthase (N terminal d


Domain annotation for each model (and alignments):
>> LRR_4  Leucine Rich repeats (2 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.1       3.9     5e+03       2      13 ..    1730    1741 ..    1707    1744 .. 0.65
   2 !   13.2   0.5   7.2e-05     0.092       1      38 [.    1759    1806 ..    1759    1811 .. 0.81
   3 !    9.1   0.3    0.0014       1.7       1      33 [.    1792    1830 ..    1792    1840 .. 0.82
   4 !   10.9   0.4   0.00039       0.5       3      36 ..    2096    2136 ..    2095    2139 .. 0.81
   5 !   11.6   0.6   0.00022      0.28       2      36 ..    2125    2162 ..    2124    2167 .. 0.80
   6 !    7.0   0.1    0.0066       8.5      21      40 ..    2249    2267 ..    2224    2274 .. 0.62
   7 ?   -0.6   0.0       1.6     2e+03       3      31 ..    2348    2382 ..    2348    2388 .. 0.51
   8 !   15.0   1.0     2e-05     0.026       1      39 [.    2416    2453 ..    2416    2458 .. 0.90
   9 !   16.3   0.9   7.7e-06    0.0098       2      39 ..    2462    2499 ..    2461    2504 .. 0.88
  10 !   20.6   1.0   3.4e-07   0.00043       2      40 ..    2485    2523 ..    2484    2527 .. 0.89

  Alignments for each domain:
  == domain 1  score: -1.8 bits;  conditional E-value: 3.9
                  S--EEE--SS-- CS
       LRR_4    2 nLevLdLsnNql 13  
                   L+ L L++N++
  KOO22124.1 1730 TLQRLVLRGNKV 1741
                  466666666665 PP

  == domain 2  score: 13.2 bits;  conditional E-value: 7.2e-05
                  SS--EEE--SS---E-S-.HH.........H.-TT--EEE-.-S----- CS
       LRR_4    1 pnLevLdLsnNqltdipl.le.........k.lpnLkeLdLsgNnlitd 38  
                  + L+ LdLsnN+l ++   ++         + +++L+ ++L +N l+++
  KOO22124.1 1759 TALTALDLSNNMLGSLRQtPAgmrqlarglStNKSLTDVNLASN-LLWP 1806
                  579***************94455566688844999******777.8775 PP

  == domain 3  score: 9.1 bits;  conditional E-value: 0.0014
                  SS--EEE--SS-.....--.E-S-HHH-TT--EEE-.-S CS
       LRR_4    1 pnLevLdLsnNq.....lt.diplleklpnLkeLdLsgN 33  
                  ++L+ ++L++N      l+   + l++++ L++LdLs+N
  KOO22124.1 1792 KSLTDVNLASNLlwpegLKaVCSALRSCTALRTLDLSDN 1830
                  57899999998878888885555599**********999 PP

  == domain 4  score: 10.9 bits;  conditional E-value: 0.00039
                  --EEE--SS---E-S-.......HHH.-TT--EEE-.-S--- CS
       LRR_4    3 LevLdLsnNqltdipl.......lek.lpnLkeLdLsgNnli 36  
                  L+ L L++N+ltd +        l++   +L +LdLs+N  +
  KOO22124.1 2096 LTALKLGHNKLTDAGVgqplvdvLRSeQCKLSSLDLSNN-EL 2136
                  889**********99988755554466999******777.44 PP

  == domain 5  score: 11.6 bits;  conditional E-value: 0.00022
                  S--EEE--SS---E-S-.HH....H-TT--EEE-.-S--- CS
       LRR_4    2 nLevLdLsnNqltdipl.le....klpnLkeLdLsgNnli 36  
                  +L +LdLsnN lt     l+    ++++L++Ld  gN+ +
  KOO22124.1 2125 KLSSLDLSNNELTG--AmLAravqSNTSLTSLDFRGNTAV 2162
                  7999*********8..665557856*********999544 PP

  == domain 6  score: 7.0 bits;  conditional E-value: 0.0066
                  H-TT--EEE-.-S-----GG CS
       LRR_4   21 klpnLkeLdLsgNnlitdld 40  
                   ++ L++Ld+s+N +++d++
  KOO22124.1 2249 TNTTLTKLDISHN-PLSDVS 2267
                  5666777777666.666665 PP

  == domain 7  score: -0.6 bits;  conditional E-value: 1.6
                  --EEE--SS.---E-S-HH.....H-TT--EEE-. CS
       LRR_4    3 LevLdLsnN.qltdiplle.....klpnLkeLdLs 31  
                  L++L+L nN  l + +          p L++LdL+
  KOO22124.1 2348 LTELSLLNNvTLGTEGARTivdrvHAPTLRTLDLN 2382
                  56666665433333333213344445667777774 PP

  == domain 8  score: 15.0 bits;  conditional E-value: 2e-05
                  SS--EEE--SS---E-S-HHH-TT--EEE-.-S-----G CS
       LRR_4    1 pnLevLdLsnNqltdiplleklpnLkeLdLsgNnlitdl 39  
                  + Le+L L  N l +++  ++l nLk++++ +Nn++++l
  KOO22124.1 2416 TALEKLTLDKNALVEFSAVGQLHNLKTITI-NNNRLETL 2453
                  579************99*999*********.88899887 PP

  == domain 9  score: 16.3 bits;  conditional E-value: 7.7e-06
                  S--EEE--SS---E-S-.HHH-TT--EEE-.-S-----G CS
       LRR_4    2 nLevLdLsnNqltdipl.leklpnLkeLdLsgNnlitdl 39  
                  +L+ L+ ++N+l ++p  ++kl +L++LdL gN ++t l
  KOO22124.1 2462 HLKRLSVRSNKLLELPYnIGKLESLESLDLKGN-RLTYL 2499
                  79***************9889*********888.77666 PP

  == domain 10  score: 20.6 bits;  conditional E-value: 3.4e-07
                  S--EEE--SS---E-S-.HHH-TT--EEE-.-S-----GG CS
       LRR_4    2 nLevLdLsnNqltdipl.leklpnLkeLdLsgNnlitdld 40  
                  +Le+LdL +N+lt +p+ +++l  Lk+Ld+s+N li++l+
  KOO22124.1 2485 SLESLDLKGNRLTYLPPsIGQLGLLKHLDVSEN-LISQLE 2523
                  7****************6667*********999.999886 PP

>> LRR_8  Leucine rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.8   0.1    0.0021       2.7      20      51 ..    1754    1784 ..    1729    1786 .. 0.81
   2 ?    3.2   0.3     0.057        72      44      60 ..    1815    1831 ..    1787    1831 .. 0.68
   3 !    8.2   2.4    0.0016       2.1      26      59 ..    2125    2159 ..    2095    2160 .. 0.83
   4 ?    4.3   0.1     0.027        35      25      41 ..    2251    2267 ..    2240    2275 .. 0.61
   5 ?    0.3   0.1      0.46   5.8e+02      44      61 .]    2411    2428 ..    2409    2428 .. 0.79
   6 !   18.8   4.3   8.1e-07     0.001       2      61 .]    2417    2473 ..    2416    2473 .. 0.91
   7 !   29.6   6.5   3.3e-10   4.3e-07       2      61 .]    2439    2496 ..    2438    2496 .. 0.98
   8 !   24.4   0.3   1.4e-08   1.8e-05       2      61 .]    2485    2542 ..    2484    2542 .. 0.91

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 0.0021
                  SSTT-TT--EEE--SS---GGGGGGGTT--S- CS
       LRR_8   20 aFkglsnLkvLdLsnNllttlspgafsgLpsL 51  
                  +F++ ++L+ LdLsnN l +l+ ++ +g+++L
  KOO22124.1 1754 MFSTSTALTALDLSNNMLGSLR-QTPAGMRQL 1784
                  7999999999*****9999994.777777776 PP

  == domain 2  score: 3.2 bits;  conditional E-value: 0.057
                  GGTT--S-.EEE--SS- CS
       LRR_8   44 afsgLpsLrsLdLsgNr 60  
                  a++++++Lr LdLs+N+
  KOO22124.1 1815 ALRSCTALRTLDLSDNH 1831
                  67788888888888886 PP

  == domain 3  score: 8.2 bits;  conditional E-value: 0.0016
                  T--EEE--SS---G.GGGGGGTT--S-.EEE--SS CS
       LRR_8   26 nLkvLdLsnNlltt.lspgafsgLpsLrsLdLsgN 59  
                  +L +LdLsnN+lt  + ++a ++ +sL+sLd +gN
  KOO22124.1 2125 KLSSLDLSNNELTGaMLARAVQSNTSLTSLDFRGN 2159
                  6999*********99889************99998 PP

  == domain 4  score: 4.3 bits;  conditional E-value: 0.027
                  TT--EEE--SS---GGG CS
       LRR_8   25 snLkvLdLsnNllttls 41  
                  + L+ Ld+s+N l+ +s
  KOO22124.1 2251 TTLTKLDISHNPLSDVS 2267
                  45555555555555554 PP

  == domain 5  score: 0.3 bits;  conditional E-value: 0.46
                  GGTT--S-.EEE--SS-- CS
       LRR_8   44 afsgLpsLrsLdLsgNrL 61  
                  ++  L++L++L+L+ N L
  KOO22124.1 2411 SLGRLTALEKLTLDKNAL 2428
                  667888999999998876 PP

  == domain 6  score: 18.8 bits;  conditional E-value: 8.1e-07
                  T-SEEE-TTS--SEE-TTSSTT-TT--EEE--SS---GGGGGGGTT--S-.EEE--SS-- CS
       LRR_8    2 nLtsLdLsnNrltslddeaFkglsnLkvLdLsnNllttlspgafsgLpsLrsLdLsgNrL 61  
                   L++L L++N l +   +a  +l+nLk++ ++nN+l+tl+ + +  L++L+ L +++N+L
  KOO22124.1 2417 ALEKLTLDKNALVEF--SAVGQLHNLKTITINNNRLETLH-DDICFLRHLKRLSVRSNKL 2473
                  599999999999877..577889****************8.*****************98 PP

  == domain 7  score: 29.6 bits;  conditional E-value: 3.3e-10
                  T-SEEE-TTS--SEE-TTSSTT-TT--EEE--SS---GGGGGGGTT--S-.EEE--SS-- CS
       LRR_8    2 nLtsLdLsnNrltslddeaFkglsnLkvLdLsnNllttlspgafsgLpsLrsLdLsgNrL 61  
                  nL+++ ++nNrl+ l+d+  + l++Lk L+ ++N+l  l p  +  L+sL+sLdL gNrL
  KOO22124.1 2439 NLKTITINNNRLETLHDDICF-LRHLKRLSVRSNKLLEL-PYNIGKLESLESLDLKGNRL 2496
                  8********************.*****************.9*****************98 PP

  == domain 8  score: 24.4 bits;  conditional E-value: 1.4e-08
                  T-SEEE-TTS--SEE-TTSSTT-TT--EEE--SS---GGGGGGGTT--S-.EEE--SS-- CS
       LRR_8    2 nLtsLdLsnNrltslddeaFkglsnLkvLdLsnNllttlspgafsgLpsLrsLdLsgNrL 61  
                  +L+sLdL  Nrlt l+++  + l  Lk+Ld s+Nl++ l+p  +++  +L+   + +N+L
  KOO22124.1 2485 SLESLDLKGNRLTYLPPSIGQ-LGLLKHLDVSENLISQLEPTICDCI-KLDRFEVKQNPL 2542
                  79*****************99.******************9988888.888877777765 PP

>> Roc  Ras of Complex, Roc, domain of DAPkinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.0   0.0   7.2e-14   9.2e-11       1     119 [.    2576    2696 ..    2576    2697 .. 0.79

  Alignments for each domain:
  == domain 1  score: 42.0 bits;  conditional E-value: 7.2e-14
                  EEEEESSTTSSHHHHHHCHCT-CCC..-EEETTTTEEEEEEECGGSGGCTTBTTTTCEEEEEEEE-SGGCTTTT-HHHHCTSCEEEEE...EE.... CS
         Roc    1 KvvlvGdsgvGKtsllkrfvedkfs..ekekstigvdfltkevtkikgvendkkvkkvklniWDtaGqerfrslhplylreaalailv...yd.... 88  
                  ++vl+G +++GKtsl + +  +  +  +k + t+++d++t  +    g    +  ++v l+ WD++Gq ++ +l + y+   +l++l+   +d    
  KOO22124.1 2576 RLVLLGHGEAGKTSLQRGLRYGAPHpaDKDERTVQLDISTLVL----G----EGESQVILSAWDLGGQVHYAALLQPYIVTGSLYLLLvpcFDvael 2664
                  589*************987777665116677888888876533....2....1235799**************************986233567555 PP

                  .GHHHHCHHHHHHHHHHHCSSS-EEEEEE-TT CS
         Roc   89 .srssenlkeWlkelkkvagkspvilvgnkiD 119 
                   +r +e l +Wl+ l+  a++++v lv +k+D
  KOO22124.1 2665 eARYDELLGRWLDYLQVGAPEAVVQLVLTKCD 2696
                  3444566799*********************9 PP

>> LRR_6  Leucine Rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.1   0.0     0.044        57       2      16 ..    1728    1742 ..    1727    1743 .. 0.94
   2 ?    1.6   0.2       0.3   3.8e+02       4      14 ..    1760    1770 ..    1757    1773 .. 0.80
   3 !    7.2   0.1    0.0048       6.1       1      24 []    1790    1813 ..    1790    1813 .. 0.94
   4 ?    4.4   0.4     0.037        48       2      14 ..    1819    1831 ..    1818    1831 .. 0.87
   5 !   11.9   0.0   0.00015      0.19       2      20 ..    2093    2111 ..    2092    2113 .. 0.94
   6 ?    4.8   0.1     0.027        34       3      17 ..    2124    2138 ..    2122    2139 .. 0.89
   7 !    7.6   0.2    0.0035       4.5       1      17 [.    2147    2164 ..    2147    2167 .. 0.89
   8 !   14.0   0.5     3e-05     0.038       1      18 [.    2249    2266 ..    2249    2267 .. 0.93
   9 ?   -0.1   0.1         1   1.3e+03       5      23 ..    2348    2367 ..    2346    2368 .. 0.91
  10 ?    0.2   0.1      0.81     1e+03       2      11 ..    2373    2382 ..    2372    2383 .. 0.84
  11 ?    2.6   0.2      0.14   1.8e+02       3      15 ..    2461    2473 ..    2459    2474 .. 0.91
  12 ?    3.9   0.1     0.051        66       4      16 ..    2485    2497 ..    2482    2498 .. 0.88
  13 ?    1.0   0.2      0.45   5.7e+02       5      15 ..    2509    2519 ..    2508    2520 .. 0.90

  Alignments for each domain:
  == domain 1  score: 4.1 bits;  conditional E-value: 0.044
       LRR_6    2 nthLteLdLsgNdIg 16  
                  nt+L+ L L+gN++g
  KOO22124.1 1728 NTTLQRLVLRGNKVG 1742
                  9***********987 PP

  == domain 2  score: 1.6 bits;  conditional E-value: 0.3
       LRR_6    4 hLteLdLsgNd 14  
                   Lt+LdLs N 
  KOO22124.1 1760 ALTALDLSNNM 1770
                  59*******95 PP

  == domain 3  score: 7.2 bits;  conditional E-value: 0.0048
       LRR_6    1 snthLteLdLsgNdIgDeGaeaLa 24  
                  +n +Lt ++L++N +  eG++a +
  KOO22124.1 1790 TNKSLTDVNLASNLLWPEGLKAVC 1813
                  599******************987 PP

  == domain 4  score: 4.4 bits;  conditional E-value: 0.037
       LRR_6    2 nthLteLdLsgNd 14  
                  +t L++LdLs+N+
  KOO22124.1 1819 CTALRTLDLSDNH 1831
                  777*********6 PP

  == domain 5  score: 11.9 bits;  conditional E-value: 0.00015
       LRR_6    2 nthLteLdLsgNdIgDeGa 20  
                  ++ Lt+L L +N+++D+G+
  KOO22124.1 2093 CSFLTALKLGHNKLTDAGV 2111
                  899***************8 PP

  == domain 6  score: 4.8 bits;  conditional E-value: 0.027
       LRR_6    3 thLteLdLsgNdIgD 17  
                  ++L +LdLs N++++
  KOO22124.1 2124 CKLSSLDLSNNELTG 2138
                  7899********996 PP

  == domain 7  score: 7.6 bits;  conditional E-value: 0.0035
       LRR_6    1 snthLteLdLsgNd.IgD 17  
                  snt+Lt+Ld +gN  ++D
  KOO22124.1 2147 SNTSLTSLDFRGNTaVDD 2164
                  69***********98887 PP

  == domain 8  score: 14.0 bits;  conditional E-value: 3e-05
       LRR_6    1 snthLteLdLsgNdIgDe 18  
                  +nt+Lt+Ld+s+N ++D+
  KOO22124.1 2249 TNTTLTKLDISHNPLSDV 2266
                  59**************96 PP

  == domain 9  score: -0.1 bits;  conditional E-value: 1
       LRR_6    5 LteLdLsgNd.IgDeGaeaL 23  
                  LteL+L  N  +g eGa  +
  KOO22124.1 2348 LTELSLLNNVtLGTEGARTI 2367
                  89**************9866 PP

  == domain 10  score: 0.2 bits;  conditional E-value: 0.81
       LRR_6    2 nthLteLdLs 11  
                   ++L++LdL+
  KOO22124.1 2373 APTLRTLDLN 2382
                  58*******7 PP

  == domain 11  score: 2.6 bits;  conditional E-value: 0.14
       LRR_6    3 thLteLdLsgNdI 15  
                  +hL+ L++++N++
  KOO22124.1 2461 RHLKRLSVRSNKL 2473
                  8**********85 PP

  == domain 12  score: 3.9 bits;  conditional E-value: 0.051
       LRR_6    4 hLteLdLsgNdIg 16  
                  +L++LdL+gN ++
  KOO22124.1 2485 SLESLDLKGNRLT 2497
                  8*********987 PP

  == domain 13  score: 1.0 bits;  conditional E-value: 0.45
       LRR_6    5 LteLdLsgNdI 15  
                  L++Ld+s N I
  KOO22124.1 2509 LKHLDVSENLI 2519
                  9********98 PP

>> Ras  Ras family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.7   0.0   3.4e-10   4.3e-07       1     119 [.    2576    2700 ..    2576    2731 .. 0.86

  Alignments for each domain:
  == domain 1  score: 29.7 bits;  conditional E-value: 3.4e-10
                  EEEEEESTTSSHHHHH..HHHHHSSCSSSCTTTSSEEEEEEEEEETTEEEEEEEEEETTSGGGHHHHHHHHTTESEEEE...EEETTB.HHHHHTHH CS
         Ras    1 KlvlvGdsavGKtsll..lrfvkdkFkeeyesTigvdfytkeievdgkevkleiwDTAGqeefkslrelyyrdaegill...vydits.resfenvk 91  
                  +lvl+G +  GKtsl   lr+   +  ++ e T+  d  t  +   +++v l+ wD  Gq ++ +l + y+ +++  ll   ++d+ + ++ ++++ 
  KOO22124.1 2576 RLVLLGHGEAGKTSLQrgLRYGAPHPADKDERTVQLDISTLVLGEGESQVILSAWDLGGQVHYAALLQPYIVTGSLYLLlvpCFDVAElEARYDELL 2672
                  58*************75579999999********999999999999************************9999988776678***98356799988 PP

                  .HHHHHHHHHSTTTSEEEEEEETTTGGGG CS
         Ras   92 .kwveeikrvaeenvpivLvGnKvDleek 119 
                   +w++ ++  a+e  ++ Lv +K+D + +
  KOO22124.1 2673 gRWLDYLQVGAPE-AVVQLVLTKCDAKLR 2700
                  8********9995.9999*******8863 PP

>> LRR_1  Leucine Rich Repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.3   0.0      0.66   8.4e+02       2      14 ..    1761    1773 ..    1760    1780 .. 0.83
   2 ?    5.7   0.0     0.023        30       2      17 ..    1822    1837 ..    1821    1844 .. 0.84
   3 ?    3.7   0.1       0.1   1.3e+02       1      14 [.    2125    2138 ..    2125    2159 .. 0.76
   4 ?    5.2   0.0     0.035        45       2      14 ..    2253    2265 ..    2252    2281 .. 0.86
   5 ?   -2.3   0.0       9.6   1.2e+04       2       9 ..    2376    2383 ..    2375    2389 .. 0.84
   6 ?    2.0   0.6       0.4   5.1e+02       1      17 [.    2439    2455 ..    2439    2460 .. 0.84
   7 ?   -0.1   0.2       1.9   2.5e+03       1      16 [.    2462    2477 ..    2462    2483 .. 0.82
   8 ?    4.7   0.1     0.049        62       1      17 [.    2485    2501 ..    2485    2506 .. 0.80
   9 ?    2.6   0.2      0.25   3.1e+02       2      17 ..    2509    2524 ..    2509    2529 .. 0.89

  Alignments for each domain:
  == domain 1  score: 1.3 bits;  conditional E-value: 0.66
       LRR_1    2 LrhLdLsnnpllg 14  
                  L+ LdLsnn l++
  KOO22124.1 1761 LTALDLSNNMLGS 1773
                  899******9854 PP

  == domain 2  score: 5.7 bits;  conditional E-value: 0.023
       LRR_1    2 LrhLdLsnnpllglpp 17  
                  Lr+LdLs+n++++ p+
  KOO22124.1 1822 LRTLDLSDNHPGREPA 1837
                  9*********966654 PP

  == domain 3  score: 3.7 bits;  conditional E-value: 0.1
       LRR_1    1 nLrhLdLsnnpllg 14  
                  +L +LdLsnn l+g
  KOO22124.1 2125 KLSSLDLSNNELTG 2138
                  7999******9943 PP

  == domain 4  score: 5.2 bits;  conditional E-value: 0.035
       LRR_1    2 LrhLdLsnnpllg 14  
                  L++Ld+s+npl++
  KOO22124.1 2253 LTKLDISHNPLSD 2265
                  99********965 PP

  == domain 5  score: -2.3 bits;  conditional E-value: 9.6
       LRR_1    2 LrhLdLsn 9   
                  Lr+LdL++
  KOO22124.1 2376 LRTLDLNS 2383
                  9*****75 PP

  == domain 6  score: 2.0 bits;  conditional E-value: 0.4
       LRR_1    1 nLrhLdLsnnpllglpp 17  
                  nL+++ ++nn+l+ l++
  KOO22124.1 2439 NLKTITINNNRLETLHD 2455
                  8***********77765 PP

  == domain 7  score: -0.1 bits;  conditional E-value: 1.9
       LRR_1    1 nLrhLdLsnnpllglp 16  
                  +L++L +++n ll lp
  KOO22124.1 2462 HLKRLSVRSNKLLELP 2477
                  69*********97665 PP

  == domain 8  score: 4.7 bits;  conditional E-value: 0.049
       LRR_1    1 nLrhLdLsnnpllglpp 17  
                  +L++LdL +n+l+ lpp
  KOO22124.1 2485 SLESLDLKGNRLTYLPP 2501
                  69**********76655 PP

  == domain 9  score: 2.6 bits;  conditional E-value: 0.25
       LRR_1    2 LrhLdLsnnpllglpp 17  
                  L+hLd+s n +++l+p
  KOO22124.1 2509 LKHLDVSENLISQLEP 2524
                  9**********99987 PP

>> Med3  Mediator complex subunit 3 fungal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   4.4   8.2e-06      0.01      71     189 ..     879    1020 ..     841    1030 .. 0.70

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 8.2e-06
        Med3   71 lsirdkvLdLnerlqe.lssdleeLq.P....LfatveeysktaknkdksfqlLenLsaynkkGk..asaskasvvnstpssaastPtttatPga.n 158 
                    +r+k+ ++++++++    dleeL  P    L + ++e  + ++ k+++  l+ +++  +   +  a+ ++ ++++s +ssaa+t  +++ P   +
  KOO22124.1  879 GEVRKKLDEVYDKFRDsTQHDLEELVaPcrflLPGMLKEQERPYDPKERQHILVAEVTVSDSDAElaAALAALQSSQSIQSSAAATAGAASLPSLlA 975 
                  57899999999999861456899985245544568899***********999998887666665511445566677888999999999999997426 PP

        Med3  159 tktaakslpapnata..............tigtptnsaaaaatta 189 
                  ++t  +++ ap+ +a              t gt  ns+aa+a+t+
  KOO22124.1  976 PSTEGANAVAPSGAAavntstpssagvsdTAGTTCNSTAATAATT 1020
                  677788888888777355555555556666666665555444444 PP

>> Arf  ADP-ribosylation factor family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.6   0.0   1.3e-05     0.017       9     104 ..    2569    2671 ..    2561    2700 .. 0.82

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 1.3e-05
                  TT.TTEEEEEEEESTTSSHHHHHHHHHHSS...CEECSSSSSEEEEEEEE....TTEEEEEEEE-SSGGGGGGGGGGCTTESEEEEEEETT-CTTHH CS
         Arf    9 klkkkelrilllGLDnaGKtTilkklklee...lvttvPTigfnveelei....knlkftvwDvGGqeklRplWknYfektdavifvvDsadreRle 98  
                  + +++ +r++llG  +aGKt +   l+ +     ++   T+  ++ +l       ++ ++ wD+GGq +   l + Y  +    + +v + d   le
  KOO22124.1 2569 EARSQGARLVLLGHGEAGKTSLQRGLRYGAphpADKDERTVQLDISTLVLgegeSQVILSAWDLGGQVHYAALLQPYIVTGSLYLLLVPCFDVAELE 2665
                  5567899***************99998765111677999*********9977777899***********9999999999888888888888888777 PP

                  HHHHHH CS
         Arf   99 eakeeL 104 
                     +eL
  KOO22124.1 2666 ARYDEL 2671
                  766665 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.0   4.8e-05     0.061       2      74 ..     707     809 ..     706     826 .. 0.72

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 4.8e-05
                 EEESSTTSSHHHHHHHHHHHH...........THEEEEEETTTCSSS............................STTHHHHHHHHHHHHHHHTSTSEE CS
         AAA   2 llyGppGtGKTllakavakel...........gvefleisgsellsk............................yvgesekkirelfkeakekakpsi 61 
                 l+   pGtGKT ++k+ a  +           g         +l+ +                            y g++++  r+++ +a e++   i
  KOO22124.1 707 LMRAGPGTGKTWMIKQAAFVVaealretrtdgG--------IRLVPMvmyvqrivflireggakggllmlyiesvYAGKKAETWRKMLIQAFEMR-ALI 796
                 55667**********988775222232222221........1222224444444555566788888999999999*******************8.9** PP

                 EEEETGGGHHHHH CS
         AAA  62 lfiDEidalaksr 74 
                 ++iD +d+ a+ r
  KOO22124.1 797 VLIDGVDEAAGLR 809
                 ********99988 PP

>> LRR_9  Leucine-rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.8   8.3e-05      0.11      51     119 ..    2425    2490 ..    2411    2528 .. 0.57

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 8.3e-05
       LRR_9   51 dndirkldgfPllkrlktlllnnnrivriaegleevlPnleelvltnnelqela.dldPlaslkklells 119 
                   n + ++  +  l+ lkt+ +nnnr+  + +++  +l +l+ l + +n+l el  ++  l sl++l    
  KOO22124.1 2425 KNALVEFSAVGQLHNLKTITINNNRLETLHDDIC-FLRHLKRLSVRSNKLLELPyNIGKLESLESL---D 2490
                  5555555555555555555555555555555553.5555555555555555553123333222222...2 PP

>> Gtr1_RagA  Gtr1/RagA G protein conserved region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.0   3.4e-05     0.044       2     130 ..    2577    2704 ..    2576    2729 .. 0.72

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 3.4e-05
   Gtr1_RagA    2 vLLmGksgsGKtsmrsiiFdnylardtlrlgatidveksevrf...lgnltlnlwDcgGqeafveeylssqkeeifrnvgvliyVfDvesreleedl 95  
                  ++L+G++++GKts+++ +     ++ + + + t++++ s++ +    +++ l+ wD+gGq ++ +    +      +    l+  fDv   ele   
  KOO22124.1 2577 LVLLGHGEAGKTSLQRGLRYG-APHPADKDERTVQLDISTLVLgegESQVILSAWDLGGQVHYAALL--QPYIVTGSLYLLLVPCFDVA--ELEARY 2668
                  89************9987433.4566666788999999988542226789**********9998764..44444444455677789999..666666 PP

   Gtr1_RagA   96 et.lkeilealrqyspeakvfvlihKmDliqedere 130 
                  ++ l + l++l+   pea v+  + K+D   ++ +e
  KOO22124.1 2669 DElLGRWLDYLQVGAPEAVVQLVLTKCDAKLRRDKE 2704
                  541568899999999999999999999964443333 PP

>> AAA_19  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   0.00026      0.33      10      36 ..     703     729 ..     697     744 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00026
      AAA_19  10 ekvllvtaGpGtGKTrvlkhivallve 36 
                 ++++l+ aGpGtGKT ++k++  ++ e
  KOO22124.1 703 NDPVLMRAGPGTGKTWMIKQAAFVVAE 729
                 578999************998766555 PP

>> COR  C-terminal of Roc, COR, domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   0.00018      0.23     141     194 .]    3006    3060 ..    3002    3060 .. 0.89

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00018
         COR  141 lLpeerpeleweeeeklelryqy.eflPkglisrlivrlhkfiedelvWrsGvvL 194 
                  lL+ e  e e e++e+l ++y    +lP+g+ +rl+  lh f + + +Wr+G++L
  KOO22124.1 3006 LLEPEGTEAEPEPTEQLGIIYPIgYILPPGIAERLMGALHGFGTYYKCWREGALL 3060
                  566666666778899********999**************************987 PP

>> TruB_N  TruB family pseudouridylate synthase (N terminal domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.1   0.00041      0.52      67     134 ..    1476    1542 ..    1444    1553 .. 0.74

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00041
                  .--TT--HHHHHHHHHHC-EEE---------------------------------EEEEEEEEEEEEE CS
      TruB_N   67 ekveklteekleevlkkftGeieqvppmySAvkvnGkrlyelaregeeverkkrkvtiyelellevee 134 
                  ++ e+++ ++l++  +k  Ge +q+     A+k ++k++ye+ r+g++  r++ k +++++el ++e 
  KOO22124.1 1476 SRKETIKFDELTTDTHKKDGEKDQTEN-RVAIKLDSKEVYEVFRHGHHYLREAAKPEVQRTELNRIEL 1542
                  345566667777788888899999875.569*****************************99987764 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (3105 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       651  (0.0363099); expected 358.6 (0.02)
Passed bias filter:                      420  (0.0234257); expected 358.6 (0.02)
Passed Vit filter:                        48  (0.00267723); expected 17.9 (0.001)
Passed Fwd filter:                        14  (0.000780858); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              14  [number of targets reported over threshold]
# CPU time: 1.38u 0.28s 00:00:01.66 Elapsed: 00:00:00.47
# Mc/sec: 19883.21
//
Query:       KOO22125.1  [L=262]
Description: radical s-adenosyl methionine domain-containing protein 2 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    3.4e-10   40.3   0.0    5.2e-10   39.7   0.0    1.2  1  Fer4_12      4Fe-4S single cluster domain
    1.5e-08   35.2   0.0    2.1e-08   34.7   0.0    1.2  1  Radical_SAM  Radical SAM superfamily
    5.2e-07   29.8   0.0    7.9e-07   29.2   0.0    1.3  1  Fer4_14      4Fe-4S single cluster domain


Domain annotation for each model (and alignments):
>> Fer4_12  4Fe-4S single cluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.7   0.0   8.7e-14   5.2e-10       9      98 ..      42     128 ..      35     148 .. 0.87

  Alignments for each domain:
  == domain 1  score: 39.7 bits;  conditional E-value: 8.7e-14
     Fer4_12   9 slfvsgCnlsCkgCfnketwsfksgkeftkelleeiiedlkkesiegltllGGEPllpenaeallelvkevkeekp.ekdiwlytgytlee 98 
                 ++f+  Cn +Ck+Cf    +  ks++  +++  +++++ + +    +l + GGEPllp+    + el+++ k+e   e + ++++g+ l  
  KOO22125.1  42 FFFTRKCNYACKFCF----HTAKSSHVLSEADCKRVLRLFREAGAVKLNIAGGEPLLPQYHGLVGELLRYSKQELAyESTSIISNGSRLTS 128
                 67899**********....778999999**********************************************988*********99865 PP

>> Radical_SAM  Radical SAM superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.7   0.0   3.5e-12   2.1e-08       3     112 ..      44     148 ..      42     175 .. 0.87

  Alignments for each domain:
  == domain 1  score: 34.7 bits;  conditional E-value: 3.5e-12
                  EESEESS--TTTSCCTTHHHHHHHHHHHHHHHHHHHHHHHHHTTSEEEEEESSTGGGS..TTHHHHHHHHHHTCCCTEEEEEEECSSCHGHHHHHHHH CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Radical_SAM   3 vtrgCnlrCsfCarpetvrregrgrslsveeileevkelkaekgvkevilgggeplly..pdfvellerlaklavpgiritvetngtlpdeeklerll 98 
                  +tr Cn++C+fC  +      + +++ls  + ++ ++ ++ e g+  + + ggepll     +v +l+r++k + +  ++++++ng +++  + e++ 
   KOO22125.1  44 FTRKCNYACKFCFHT-----AKSSHVLSEADCKRVLRLFR-EAGAVKLNIAGGEPLLPqyHGLVGELLRYSKQELAYESTSIISNGSRLTSQWFEAHS 135
                  89***********99.....59*****************6.889*************53355666666666666***************999999999 PP

                  HTT-SEEEEEEBSS CS
                  xxxxxxxxxxxxxx RF
  Radical_SAM  99 elgvdrvslgleaa 112
                  + ++d + ++++++
   KOO22125.1 136 R-HLDIMGVSVDSL 148
                  8.779999999986 PP

>> Fer4_14  4Fe-4S single cluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.2   0.0   1.3e-10   7.9e-07       3      90 ..      43     124 ..      41     147 .. 0.71

  Alignments for each domain:
  == domain 1  score: 29.2 bits;  conditional E-value: 1.3e-10
     Fer4_14   3 vrlsgCnlsCkgCdnketwkselgkpqteelleqilkdlkkseikiqglvltGGePLhyenkkellklvkrlkeeypekkiwletngt 90 
                 + + +Cn +Ck+C+++++ +  l + + +++l + +    +      +l + GGePL+++ +  + +l+++ k+e    +  + +ng+
  KOO22125.1  43 FFTRKCNYACKFCFHTAKSSHVLSEADCKRVL-RLF---REAGA--VKLNIAGGEPLLPQYHGLVGELLRYSKQELAYESTSIISNGS 124
                 5589***********99555555555555555.444...33333..4588*********9999999***9999998555555555554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (262 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       490  (0.02733); expected 358.6 (0.02)
Passed bias filter:                      399  (0.0222544); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.43u 0.25s 00:00:00.68 Elapsed: 00:00:00.40
# Mc/sec: 1969.04
//
Query:       KOO22126.1  [L=312]
Description: hypothetical protein Ctob_005936 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (312 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       522  (0.0291148); expected 358.6 (0.02)
Passed bias filter:                      335  (0.0186848); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.42u 0.26s 00:00:00.68 Elapsed: 00:00:00.40
# Mc/sec: 2312.11
//
Query:       KOO22127.1  [L=1618]
Description: ubiquitin-activating enzyme e1 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.9e-83  279.0   0.0    9.1e-61  205.3   0.0    3.1  2  ThiF             ThiF family
    1.4e-65  221.7   0.0    2.3e-65  221.0   0.0    1.3  1  UBA_e1_thiolCys  Ubiquitin-activating enzyme active site
    1.6e-13   50.6   0.0    5.7e-13   48.9   0.0    2.0  1  E1_4HB           Ubiquitin-activating enzyme E1 four-helix bu
      2e-08   33.6   0.1      0.065   13.3   0.0    4.8  4  LRR_6            Leucine Rich repeat
  ------ inclusion threshold ------
       0.03   14.7   0.0         10    6.7   0.0    2.8  2  LRR_4            Leucine Rich repeats (2 copies)


Domain annotation for each model (and alignments):
>> ThiF  ThiF family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.7   0.0   6.5e-23   2.3e-19       3     219 ..     152     558 ..     147     581 .. 0.74
   2 !  205.3   0.0   2.5e-64   9.1e-61       2     238 ..     584    1105 ..     583    1117 .. 0.97

  Alignments for each domain:
  == domain 1  score: 69.7 bits;  conditional E-value: 6.5e-23
                 HHHHHHHHHHHHHHHTSEEEEE--SHHHHHHHHHHHHHTTTEEEEEESSB--GGGGGTBTTS-GGGTTSBHHHHHHHHHHHT-TTSEEEEEES-CCGCC CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        ThiF   3 rqlallgedgqekLrdskvllvGaGglGsellknLalsGvgkltlvDnDkielsNlnRqflfreediGkpKaevaaealqeinpdveveavteritdet 101
                 r + ++g d  +k+  +kvl+vG+ g+G e++kn +l+Gv  lt++D    ++ +l   f  +e+d+Gkp+a+v a +++e+n++v v+a ++   +  
  KOO22127.1 152 RMIGAFGLDVIAKMVGMKVLIVGCKGIGIEVAKNTVLAGVHTLTIFDPAPTSVRDLGTNFFLTEADVGKPRATVCAPRVAELNSNVLVQAAEGGELT-- 248
                 446669999*****************************************************************************99999876533.. PP

                 S-HHHHTT-SEEEEESSSHHHHHHHHHHHHHHT..-EEEEEEEETTEEEEEEEEECCS-ECTSS-TGGS.EECCCCEEHHH.................. CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.................. RF
        ThiF 102 vleellesvDlVvdalDniearrlvnracvkkg..iplieagtlgfegqvvviipgktgcyeCldpsstedptekkvplct.................. 180
                   e l+ ++ + v +  +++     n++c++++  i+++     g++g ++v  +g++  +++      + p  k v +++                  
  KOO22127.1 249 --EALVAQHTIAVFTRGSRTELTRWNEFCRSQKhpISFLCCYGGGAWGGLFVD-HGDSFTIRDATG---RAPLIKLVKSIEvkedhvlvrydtpdgqpp 341
                 ..468888888777777777777779999966622334556666666666666.455555555543...222222222222333333344555666666 PP

                 ................................................................................................... CS
                 ................................................................................................... RF
        ThiF 181 ................................................................................................... 180
                                                                                                                    
  KOO22127.1 342 eglpdgglvefdevkglisagawaeagnpsggslnnagpvrtshasedpvktfrislptdlsgpptawmgggvitekkeattvhfrsfaecvhkpggvv 440
                 666677777777777777777777777777777777777777777777777777888888888888888888888888888888888888888888888 PP

                 ...............................................................................HHHCT.E-B-HHHHHHHHHH CS
                 ...............................................................................xxxxx.xxxxxxxxxxxxxx RF
        ThiF 181 ...............................................................................siagn.ipaiatttavvagl 199
                                                                                                ++a      + ++ a+ +g+
  KOO22127.1 441 magdgtqgflmtdmtfsmvelqlhvaqqgvfafeeasgrlpnindaadaaqvvvlakefeaatgvlggmglevdesitaRVAMHcRIELQPMSAFWGGV 539
                 888888888888888888888888888888888888888888888888888888888888888888877777777544422222444588888888888 PP

                 HHHHHHHHHTTBCGGGCCEE CS
                 xxxxxxxxxxxxxxxxxxxx RF
        ThiF 200 aalellkllsgkeklensll 219
                 +a+el+k+   k +  +++l
  KOO22127.1 540 VAQELVKVAG-KYTPIQQFL 558
                 8888888864.444444444 PP

  == domain 2  score: 205.3 bits;  conditional E-value: 2.5e-64
                  HHHHHHHHHHHHHHHHTSEEEEE--SHHHHHHHHHHHHHTTT.....EEEEEESSB--GGGGGTBTTS-GGGTTSBHHHHHHHHHHHT-TTSEEEEE CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        ThiF    2 srqlallgedgqekLrdskvllvGaGglGsellknLalsGvg.....kltlvDnDkielsNlnRqflfreediGkpKaevaaealqeinpdveveav 93  
                  +  +a+ g+++qe+L + +v++vG+G+lG+e++kn+al+Gv      +l ++DnD+ie+sNlnRqflfre+++GkpK+e+aa+++  +np++++ea 
  KOO22127.1  584 DDMIAVYGRAFQERLGELRVFMVGCGALGCEFMKNFALLGVCcgptgSLVVTDNDRIEVSNLNRQFLFREDNVGKPKSEAAAARALTMNPSLNIEAK 680 
                  556888999*******************************9777888************************************************** PP

                  ES-CCGCC...S-HHHHTT-SEEEEESSSHHHHHHHHHHHHHHT-EEEEEEEETTEEEEEEEEECCS-ECTSS-TGGS.EECCCCEEHHH....... CS
                  xxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx....... RF
        ThiF   94 teritdet...vleellesvDlVvdalDniearrlvnracvkkgiplieagtlgfegqvvviipgktgcyeCldpsstedptekkvplct....... 180 
                  ++ + ++t   +  ++++++DlV++alDn++ar++v+  c+++++pl+e+gt g+  +v +++p+ t  y +      +  ++  vp+ct       
  KOO22127.1  681 QDLVATTTehlFDSDFWNGLDLVCNALDNMKARLYVDAQCIFYEKPLLESGTMGTGANVDIVVPHLTRSYADGG----AADEGGGVPMCTlrnfphl 773 
                  ****9955589899*************************************************99999999996....7999999************ PP

                  ................................................................................................. CS
                  ................................................................................................. RF
        ThiF  181 ................................................................................................. 180 
                                                                                                                   
  KOO22127.1  774 idhciewarakfedlfadpaqkaakvledvnsfvkktrsetlqatdgrsskiskeipklkklistlemgtkgptmsdavalawaafhelfrdilldl 870 
                  ************************************************************************************************* PP

                  ................................................................................................. CS
                  ................................................................................................. RF
        ThiF  181 ................................................................................................. 180 
                                                                                                                   
  KOO22127.1  871 teqfpdgskdkkgepfwsghkrfpkaahydasnpehvafmlatsnlfaamlgipgkkppselnqpgpmrwqapyrsaewlagmlakiggppervkga 967 
                  ************************************************************************************************* PP

                  ................................................................................HHHCT.E-B-HHHHHHH CS
                  ................................................................................xxxxx.xxxxxxxxxxx RF
        ThiF  181 ................................................................................siagn.ipaiatttavv 196 
                                                                                                   iag+ ipaiattta v
  KOO22127.1  968 veidgeekkegaddmareeaeleqllkriadmgagakghfepadfekddddnfhidfitacsnlraanyhipttsrhkckMIAGRiIPAIATTTASV 1064
                  ********************************************************************************9**************** PP

                  HHHHHHHHHHHHTTBCGGGCCEEEECCTTTTEEEEECCEEEE CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        ThiF  197 aglaalellkllsgkeklenslltqvdllesrfenvelerak 238 
                  +gl++le+lk+l++k+ +++ ++ ++dl ++++  +e e+++
  KOO22127.1 1065 TGLVMLEMLKVLQNKP-TAQLRNGNYDLGSNQYMLFEAEPPA 1105
                  ************8777.9999999999999998888876655 PP

>> UBA_e1_thiolCys  Ubiquitin-activating enzyme active site
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  221.0   0.0   6.3e-69   2.3e-65       1     252 []     771    1047 ..     771    1047 .. 0.88

  Alignments for each domain:
  == domain 1  score: 221.0 bits;  conditional E-value: 6.3e-69
  UBA_e1_thiolCys    1 PneieHtieWArdkFeglFekkpeevnkflkdkekfleelekekeeeklet..........lekvlkll.vkerpktfedCvkwArekfekl 81  
                       P+ i+H+ieWAr+kFe+lF ++++++ k+l+d ++f++++++e+ + +             l+k+ ++l +  +  t++d+v++A+  f++l
       KOO22127.1  771 PHLIDHCIEWARAKFEDLFADPAQKAAKVLEDVNSFVKKTRSETLQATDGRsskiskeipkLKKLISTLeMGTKGPTMSDAVALAWAAFHEL 862 
                       99******************************9****999999888773332344555455555555557788999**************** PP

  UBA_e1_thiolCys   82 FnnkikqLlynfPkdsktsdGapFWsgpKraPkplefdlenelhleFvvaaanLraqvygikg..................erdeeaiakll 155 
                       F++   +L+++fP  sk+++G+pFWsg+Kr+Pk+ ++d++n+ h+ F +a++nL+a ++gi+g                   r+ e++a +l
       KOO22127.1  863 FRDILLDLTEQFPDGSKDKKGEPFWSGHKRFPKAAHYDASNPEHVAFMLATSNLFAAMLGIPGkkppselnqpgpmrwqapYRSAEWLAGML 954 
                       ********************************************************************99999999987765899******* PP

  UBA_e1_thiolCys  156 skvkvpefkpkekvkiavsdeeakeeeeeeedeeeleelaeeleklakkesslalklkpieFeKDddtnfhidfitaasNlRArnYkIkead 247 
                       +k+  p  + k +v+i+ +++++ +++    +e+ele+l + ++++ +  +    +++p++FeKDdd+nfhidfita+sNlRA+nY+I++++
       KOO22127.1  955 AKIGGPPERVKGAVEIDGEEKKEGADDM-AREEAELEQLLKRIADMGAGAKG---HFEPADFEKDDDDNFHIDFITACSNLRAANYHIPTTS 1042
                       **99999999999999844444433332.35589999999999997777655...5************************************ PP

  UBA_e1_thiolCys  248 rlkvK 252 
                       r+k+K
       KOO22127.1 1043 RHKCK 1047
                       ***98 PP

>> E1_4HB  Ubiquitin-activating enzyme E1 four-helix bundle
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.9   0.0   1.6e-16   5.7e-13       3      69 ..     423     499 ..     422     500 .. 0.97

  Alignments for each domain:
  == domain 1  score: 48.9 bits;  conditional E-value: 1.6e-16
                 EE----HHHHTTS-...........-BE-S-GGGTTCHHHHHHHHHHHHHHHHCTT----TT-HHHHHHHHHHHHHH CS
      E1_4HB   3 tlsFksleesleeP..........eeflisDfakfdrpeqlHlafqALhaFeeehgrlPrplneedaekvvalakel 69 
                 t++F+s++e++++P          + fl++D++    + qlH+a q++ aFee  grlP+ ++++da++vv lake+
  KOO22127.1 423 TVHFRSFAECVHKPggvvmagdgtQGFLMTDMTFSMVELQLHVAQQGVFAFEEASGRLPNINDAADAAQVVVLAKEF 499
                 89******************************9999999***********************************986 PP

>> LRR_6  Leucine Rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.4   0.0     0.058   2.1e+02      14      24 .]    1379    1389 ..    1375    1389 .. 0.83
   2 ?    0.9   0.0      0.17   6.2e+02       1      18 [.    1424    1441 ..    1424    1446 .. 0.89
   3 !   10.5   0.0   0.00015      0.53       3      24 .]    1493    1514 ..    1491    1514 .. 0.92
   4 !   13.3   0.0   1.8e-05     0.065       1      24 []    1521    1544 ..    1521    1544 .. 0.94

  Alignments for each domain:
  == domain 1  score: 2.4 bits;  conditional E-value: 0.058
       LRR_6   14 dIgDeGaeaLa 24  
                  +IgD+G+ea a
  KOO22127.1 1379 KIGDQGLEAVA 1389
                  5*******986 PP

  == domain 2  score: 0.9 bits;  conditional E-value: 0.17
       LRR_6    1 snthLteLdLsgNdIgDe 18  
                  ++++L+ L  + N ++D+
  KOO22127.1 1424 HCPNLRDLVFKQNSLTDA 1441
                  79**************97 PP

  == domain 3  score: 10.5 bits;  conditional E-value: 0.00015
       LRR_6    3 thLteLdLsgNdIgDeGaeaLa 24  
                  t L+e +Ls+ dI+D+G+ ++a
  KOO22127.1 1493 TRLEEIELSDTDISDAGLASIA 1514
                  689***************9997 PP

  == domain 4  score: 13.3 bits;  conditional E-value: 1.8e-05
       LRR_6    1 snthLteLdLsgNdIgDeGaeaLa 24  
                  + ++L++L ++ + I+DeGa aLa
  KOO22127.1 1521 HLRKLRSLYMQACRITDEGARALA 1544
                  5689*******************8 PP

>> LRR_4  Leucine Rich repeats (2 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.8   0.0     0.011        40       1      32 [.    1426    1465 ..    1426    1474 .. 0.79
   2 ?    6.7   0.0    0.0029        10       1      38 [.    1493    1537 ..    1493    1540 .. 0.82

  Alignments for each domain:
  == domain 1  score: 4.8 bits;  conditional E-value: 0.011
                  SS--EEE--SS---E-S-..HH.....H.-TT--EEE-.- CS
       LRR_4    1 pnLevLdLsnNqltdipl..le.....k.lpnLkeLdLsg 32  
                  pnL+ L + +N ltd  +  l      +  p ++ L+L g
  KOO22127.1 1426 PNLRDLVFKQNSLTDAAFsaLHevikrGeWPAMERLNLAG 1465
                  8**************8885522667775588888888866 PP

  == domain 2  score: 6.7 bits;  conditional E-value: 0.0029
                  SS--EEE--SS---E-S-....HH...H.-TT--EEE-.-S----- CS
       LRR_4    1 pnLevLdLsnNqltdipl....le...k.lpnLkeLdLsgNnlitd 38  
                  ++Le++ Ls++ ++d +l    l+   + l +L++L++  + +itd
  KOO22127.1 1493 TRLEEIELSDTDISDAGLasiaLAiqrGhLRKLRSLYMQAC-RITD 1537
                  68*************99976553388955*********777.6665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1618 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       564  (0.0314574); expected 358.6 (0.02)
Passed bias filter:                      525  (0.0292822); expected 358.6 (0.02)
Passed Vit filter:                        53  (0.0029561); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.97u 0.29s 00:00:01.26 Elapsed: 00:00:00.49
# Mc/sec: 9937.92
//
Query:       KOO22128.1  [L=249]
Description: thiamine triphosphatase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.2e-09   37.0   0.0    4.4e-09   36.5   0.0    1.2  1  CYTH      CYTH domain


Domain annotation for each model (and alignments):
>> CYTH  CYTH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.5   0.0   2.5e-13   4.4e-09       3     135 ..      39     194 ..      37     207 .. 0.78

  Alignments for each domain:
  == domain 1  score: 36.5 bits;  conditional E-value: 2.5e-13
                 EEEEEEEE-HHHHHHHHHHHHHCTCEEEEEEEEEEEEEE-TTTHHHHTTEEEEEEEETTTEEE.EEEEEECSSST....EEEEEEEECCCEEECCCC.. CS
        CYTH   3 EvEvKflvsaaeyedlelrlaelrakeettveqrdtYydtpdrdlartdeaLRiRraegdgee.ltlKgpgvdge....reevegevsreEyeepls.. 94 
                 EvE+Kf+++    ++l ++la+l +  ++  ++ d Y+dt d+ l  +d++LR R a+ + ++ +  +      +     + v   ++  +++ +    
  KOO22128.1  39 EVERKFAPT---PRTL-VLLASL-G-TPRATTFVDRYFDTLDHLLTTRDMWLRRRDARVELKYpMAAQDD----AapapLGGVDYYHETGDWALIARva 127
                 9*******5...3333.334555.4.4444458**********************554444443333333....24567999999999777777777** PP

                 ..............HHHHHHHHHHHTT-EEEEEEEEEEEEEEE......TT......EEEEEEEETT CS
        CYTH  95 ..............daaeaaelldglglepvasvkklRrkykl......eg......vevalDavef 135
                                ++++ + l++ g  +++++++ Rr+y l      +g      v v++D ve 
  KOO22128.1 128 dlarlrapypapavPPPDVERWLERSGVHLFGELRTHRRRYVLtlpvggGGgpqqhrVHVDVDSVEL 194
                 **************99***************************888865115677778888888875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (249 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       320  (0.0178482); expected 358.6 (0.02)
Passed bias filter:                      253  (0.0141112); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.29s 00:00:00.68 Elapsed: 00:00:00.42
# Mc/sec: 1792.95
//
Query:       KOO22129.1  [L=747]
Description: hypothetical protein Ctob_005498 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (747 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       843  (0.0470188); expected 358.6 (0.02)
Passed bias filter:                      332  (0.0185175); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.64u 0.28s 00:00:00.92 Elapsed: 00:00:00.45
# Mc/sec: 5022.49
//
Query:       KOO22130.1  [L=136]
Description: hypothetical protein Ctob_005499 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (136 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       284  (0.0158403); expected 358.6 (0.02)
Passed bias filter:                      259  (0.0144459); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.24s 00:00:00.60 Elapsed: 00:00:00.38
# Mc/sec: 1068.72
//
Query:       KOO22131.1  [L=460]
Description: gaf sensor protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.1e-18   66.0   0.2    6.6e-18   65.0   0.2    1.5  1  SelR            SelR domain
    1.8e-07   31.5   0.1    3.9e-07   30.4   0.1    1.6  1  GAF_2           GAF domain
    1.7e-06   28.7   0.0    5.3e-06   27.1   0.0    1.9  2  GAF             GAF domain
  ------ inclusion threshold ------
      0.074   13.0   1.4        1.7    8.6   1.4    2.4  1  Endonuclease_7  Recombination endonuclease VII
       0.35   11.1   1.8       0.94    9.7   1.8    1.7  1  Yippee-Mis18    Yippee zinc-binding/DNA-binding /Mis18, centr


Domain annotation for each model (and alignments):
>> SelR  SelR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.0   0.2   1.8e-21   6.6e-18      24     119 ..     350     456 ..     332     458 .. 0.83

  Alignments for each domain:
  == domain 1  score: 65.0 bits;  conditional E-value: 1.8e-21
                 SSSTSS--SSCEEEETTTS-EEEECCCCE-STTSSSEESS-STTTT......EEEEEEECTTSEEEEEEETTCECEEEEEECTSSSS.....S.SEEEE CS
        SelR  24 tgeyekekekGvyecavcgepLfssetkfdsgcGwpsFaeaikeea......vkekkdtslgmertevvcakcdahlGhvFedgpkp.....ttgkryc 111
                  ++y k +e Gvy+ca c+ +L++ ++kf   c wpsF ++++ ++      v+    ++++    e+ c+kc  +lGh Fedg ++     + + r+c
  KOO22131.1 350 ADAYAKLFEPGVYRCAKCEDTLYDHTAKFVGPCLWPSFRAPHHPTKslhcidVAPGAYNQYTCAVKELYCKKCTLFLGHAFEDGATTgdthpEARWRHC 448
                 67899***********************************99876533332255556677789999******************976666657789*** PP

                 E-CCCEEE CS
        SelR 112 insvslkf 119
                 + s+sl f
  KOO22131.1 449 VLSLSLMF 456
                 ******99 PP

>> GAF_2  GAF domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.4   0.1   1.1e-10   3.9e-07       7     135 ..      99     248 ..      93     249 .. 0.73

  Alignments for each domain:
  == domain 1  score: 30.4 bits;  conditional E-value: 1.1e-10
                 HHHHHHHHHHH.SS...EEEEEEE-TTS-EEEE..................EEEES-TTSTT-S-B---TTH.HHHHHHHTS-EEES-GGG-S-HHHHH CS
       GAF_2   7 lldlvldelve.lgaa.lgyillvdddgglrla..................awgeaeeefgaaldrplgegl.vgealrtgrpvilndleedpdkkglp 84 
                  l++v+  ++e ++a+ +g++ +v++  g +l                   a++++   + aa+    ++g    +++++gr+++ +d+ + p  +++ 
  KOO22131.1  99 ALRAVCALVAEkTNAHwCGIYQVVQPSAGTDLGpfggdngapnllklayigAPSRPYFPLTAAF----AAGSnNSTVAMSGRAIVYHDILALPTDSPYY 193
                 6899999998878999999999988664433334444444222223324333333333333333....6774488************************ PP

                 HHHHTT--EEEEEE-T.TS..---EEEEES......--.HHHHHHHHHHHHHHHH CS
       GAF_2  85 aghaglrsflavPlis.eg..rvvGvlnlyankppafd.eedlelLeelaeqiai 135
                   +a++rs+++vP+++  g  +v+G++ + a++p+ f  +e l l+ + ++q+++
  KOO22131.1 194 TCDARVRSEACVPIFGpAGsdKVIGIMDVEAFEPDVFRpAEALGLVLAACAQLST 248
                 ***************9987558***************647777777777777765 PP

>> GAF  GAF domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   0.0       3.9   1.4e+04       7      24 ..      68      85 ..      66      89 .. 0.84
   2 !   27.1   0.0   1.5e-09   5.3e-06       3     131 ..      97     248 ..      95     249 .. 0.73

  Alignments for each domain:
  == domain 1  score: -3.4 bits;  conditional E-value: 3.9
                HHHHHHHHHHHTESEEEE CS
         GAF  7 dtvveelrellgadrval 24
                ++ ++e++++lga r+++
  KOO22131.1 68 RKMADEMFDALGAARATV 85
                567899999****99987 PP

  == domain 2  score: 27.1 bits;  conditional E-value: 1.5e-09
                 HHHHHHHHHHHHHHHTESEEEEEE...................EEETTEEECEEEEECCEEEET.....TSHHHH.HHHHHSSSEEESTGGTSTTHHTT CS
         GAF   3 eelldtvveelrellgadrvalyl...................pdydGlhydipqasrwlfmkn.....grgicg.qvlatgqplvipdstpdprfaqy 76 
                  ++l+ v++ ++e ++a+++ +y+                   p+ + l y i + sr  f+ +     g++  + +v+ +g+++v +d+ + p  ++y
  KOO22131.1  97 LRALRAVCALVAEKTNAHWCGIYQvvqpsagtdlgpfggdngaPNLLKLAY-IGAPSRPYFPLTaafaaGSN--NsTVAMSGRAIVYHDILALPTDSPY 192
                 57899******************9999888777776666665544444566.55555554444422433333..159999*********8877776675 PP

                 ..HHHHHHHHTTESEEEEEEEEE...TTEEEEEEEEEESSS.CS.HHHHHHHHHHHHHHHHH CS
         GAF  77 ..nrrdllenmgirsslvvPlvn...dgelwGllvlhnpsp.pf.treelellqvladqvav 131
                   +         +rs ++vP++     ++++G++++    p  f   e+l l+ + ++q++ 
  KOO22131.1 193 ytC------DARVRSEACVPIFGpagSDKVIGIMDVEAFEPdVFrPAEALGLVLAACAQLST 248
                 554......79***********77789***********555579555568888888888775 PP

>> Endonuclease_7  Recombination endonuclease VII
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.6   1.4   0.00047       1.7      10      68 ..     348     431 ..     338     443 .. 0.64

  Alignments for each domain:
  == domain 1  score: 8.6 bits;  conditional E-value: 0.00047
                     SHHHHHHTT---TTSE-TTT--EEETTS--E..........EEEE-T..................TT--.EEEEEHHHHH.HHHTTT CS
  Endonuclease_7  10 itkeerkalleaqggkCaiCqerekektkal..........avDHdH..................ktgkvRgllCgsCNtalGklkd 68 
                     it++ + +l e    +Ca C+ +   +t+++          a    H                   t+ v++l C++C   lG++ +
      KOO22131.1 348 ITADAYAKLFEPGVYRCAKCEDTLYDHTAKFvgpclwpsfrA-P--HhptkslhcidvapgaynqYTCAVKELYCKKCTLFLGHAFE 431
                     588888888888888888888755555555455555554431.1..12334443445555555555666**************9743 PP

>> Yippee-Mis18  Yippee zinc-binding/DNA-binding /Mis18, centromere assembly
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   1.8   0.00026      0.94       2      70 ..     361     431 ..     360     439 .. 0.76

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 0.00026
                   EEEETTTS-EEEECCCEEE.EECCCEEEES---CCCEEEECEEEET.TSTTEEEEEEEETTT--EEEEEEE CS
  Yippee-Mis18   2 vfqCkkCktilgdslqlvs.egralnivvlkkvtrnvvvgkelvtd.eegkctystlsCkgCnsvlGwkYk 70 
                   v++C+kC+  l d ++ +      +++    + t+++ + +      ++ +c++++l+Ck+C   lG  ++
    KOO22131.1 361 VYRCAKCEDTLYDHTAKFVgPCLWPSFRAPHHPTKSLHCIDVAPGAyNQYTCAVKELYCKKCTLFLGHAFE 431
                   678999999999877665535555677777777777777777777744455****************9886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (460 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       468  (0.026103); expected 358.6 (0.02)
Passed bias filter:                      322  (0.0179597); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.54u 0.25s 00:00:00.79 Elapsed: 00:00:00.45
# Mc/sec: 3058.31
//
Query:       KOO22132.1  [L=830]
Description: tpr repeat-containing protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.3e-35  118.9   9.1      4e-06   26.4   0.0    7.4  7  TPR_1          Tetratricopeptide repeat
    6.7e-31  103.9  15.6      5e-05   23.1   0.1    7.5  7  TPR_2          Tetratricopeptide repeat
      2e-30  104.2  26.2    2.5e-08   33.5   2.1    6.7  6  TPR_11         TPR repeat
    4.9e-24   82.9  16.8    0.00016   21.8   0.4    8.4  9  TPR_17         Tetratricopeptide repeat
    1.4e-22   79.7  26.3    6.6e-10   39.1   3.7    5.4  5  TPR_12         Tetratricopeptide repeat
    2.1e-22   77.4   5.9    0.00021   21.2   0.0    7.0  6  TPR_8          Tetratricopeptide repeat
    1.3e-20   71.8   7.9     0.0006   19.7   0.0    6.8  7  TPR_7          Tetratricopeptide repeat
    2.4e-19   68.4  28.9     0.0016   19.1   0.2    8.0  7  TPR_14         Tetratricopeptide repeat
    1.6e-18   65.9  35.5    0.00029   20.6   0.0    7.8  7  TPR_10         Tetratricopeptide repeat
    2.5e-15   56.8  41.1    2.3e-07   31.3  10.4    5.9  6  TPR_16         Tetratricopeptide repeat
    5.9e-13   49.1  18.2    8.6e-06   26.2   0.3    5.3  4  TPR_19         Tetratricopeptide repeat
    5.7e-12   45.7   0.0    1.6e-11   44.3   0.0    1.8  2  Lipase_3       Lipase (class 3)
    2.3e-07   30.8  16.1    0.00037   20.6   0.1    4.9  6  TPR_9          Tetratricopeptide repeat
      9e-05   21.8  13.0     0.0087   15.3   3.6    3.0  2  TPR_15         Tetratricopeptide repeat
     0.0001   22.5  30.0        1.5    9.7   0.0    8.3  7  TPR_4          Tetratricopeptide repeat
  ------ inclusion threshold ------
      0.016   15.8   1.2      0.016   15.8   1.2    3.5  2  Abhydrolase_6  Alpha/beta hydrolase family
       0.05   14.3  16.3        8.7    7.2   1.5    6.6  6  TPR_6          Tetratricopeptide repeat
       0.11   13.0  16.6        0.3   11.5   1.4    4.0  3  BTAD           Bacterial transcriptional activator domain
       0.11   11.3   0.3        1.1    8.0   0.0    2.4  3  NARP1          NMDA receptor-regulated protein 1
        3.7    7.9   6.4        2.2    8.7   0.5    3.2  2  TPR_20         Tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> TPR_1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.2   0.1   0.00029      0.26       8      34 .]     347     373 ..     342     373 .. 0.94
   2 !   16.2   0.1   7.7e-06    0.0069       1      33 [.     374     406 ..     374     407 .. 0.96
   3 !   20.6   0.0     3e-07   0.00027       3      34 .]     410     441 ..     408     441 .. 0.95
   4 ?    5.4   0.0     0.019        17       3      32 ..     444     473 ..     442     475 .. 0.83
   5 !   13.1   0.0   6.9e-05     0.062       5      33 ..     480     508 ..     477     509 .. 0.96
   6 !   26.4   0.0   4.5e-09     4e-06       5      33 ..     514     542 ..     512     542 .. 0.95
   7 !   23.1   1.8   5.1e-08   4.5e-05       2      32 ..     548     578 ..     547     580 .. 0.95

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00029
                 HHHHHHTT-HHHHHHHHHHHHHHSTTH CS
       TPR_1   8 GnayfklgkydeAleyyekALelnPnn 34 
                 G+a+   g++  A++ +e A++l+P++
  KOO22132.1 347 GAALKASGDLPAAIAEFEAAISLDPTY 373
                 8999*********************97 PP

  == domain 2  score: 16.2 bits;  conditional E-value: 7.7e-06
                 HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT CS
       TPR_1   1 akalynlGnayfklgkydeAleyyekALelnPn 33 
                 a+a++n Gna + lg+y +A+     A+el P+
  KOO22132.1 374 ARAYNNYGNAKQALGEYHDAIRLHTTAIELMPT 406
                 89****************************886 PP

  == domain 3  score: 20.6 bits;  conditional E-value: 3e-07
                 HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH CS
       TPR_1   3 alynlGnayfklgkydeAleyyekALelnPnn 34 
                 a++nlGna+++ g++ +A++  ekA+ l P++
  KOO22132.1 410 AYNNLGNALREVGQPVQAVAVLEKAVVLSPTY 441
                 9****************************986 PP

  == domain 4  score: 5.4 bits;  conditional E-value: 0.019
                 HHHHHHHHHHHTT-HHHHHHHHHHHHHHST CS
       TPR_1   3 alynlGnayfklgkydeAleyyekALelnP 32 
                 a+ nlG+a +  g +d A+   + A +l P
  KOO22132.1 444 AYTNLGAAAQASGAPDHAVIWHSFAQRLAP 473
                 9***************99877777766666 PP

  == domain 5  score: 13.1 bits;  conditional E-value: 6.9e-05
                 HHHHHHHHHTT-HHHHHHHHHHHHHHSTT CS
       TPR_1   5 ynlGnayfklgkydeAleyyekALelnPn 33 
                 +nlG+a+  +g+  eA +++e+ L + P+
  KOO22132.1 480 NNLGAALEANGQVAEAGAAFERGLAVAPT 508
                 8*************************997 PP

  == domain 6  score: 26.4 bits;  conditional E-value: 4.5e-09
                 HHHHHHHHHTT-HHHHHHHHHHHHHHSTT CS
       TPR_1   5 ynlGnayfklgkydeAleyyekALelnPn 33 
                  nlGn+++k g+++eA++ y  ALe +P+
  KOO22132.1 514 INLGNTLRKRGRLEEAIQSYTAALEADPE 542
                 59*************************95 PP

  == domain 7  score: 23.1 bits;  conditional E-value: 5.1e-08
                 HHHHHHHHHHHHTT-HHHHHHHHHHHHHHST CS
       TPR_1   2 kalynlGnayfklgkydeAleyyekALelnP 32 
                  a++nl++a++  g+ + Al++ye A+ l+P
  KOO22132.1 548 LAYNNLAAAFQAAGESQRALQAYEAAIALRP 578
                 69***************************99 PP

>> TPR_2  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.4   0.1   3.8e-06    0.0034       4      34 .]     343     373 ..     340     373 .. 0.92
   2 !   14.0   0.2   4.5e-05     0.041       1      33 [.     374     406 ..     374     407 .. 0.96
   3 !   18.1   0.0   2.1e-06    0.0019       2      34 .]     409     441 ..     408     441 .. 0.95
   4 ?    0.0   0.0       1.4   1.2e+03       3      21 ..     444     462 ..     442     464 .. 0.88
   5 !   15.1   0.0     2e-05     0.018       5      33 ..     480     508 ..     476     509 .. 0.93
   6 !   23.1   0.1   5.6e-08     5e-05       5      33 ..     514     542 ..     512     542 .. 0.95
   7 !   17.6   3.0   3.2e-06    0.0029       2      33 ..     548     579 ..     547     580 .. 0.94

  Alignments for each domain:
  == domain 1  score: 17.4 bits;  conditional E-value: 3.8e-06
       TPR_2   4 lynlGlayyklgdyeeAleafekAleldPnn 34 
                   n G a+ ++gd+  A++ fe+A++ldP++
  KOO22132.1 343 RSNYGAALKASGDLPAAIAEFEAAISLDPTY 373
                 5799*************************85 PP

  == domain 2  score: 14.0 bits;  conditional E-value: 4.5e-05
       TPR_2   1 aealynlGlayyklgdyeeAleafekAleldPn 33 
                 a+a++n G+a  +lg+y +A+++   A+el P+
  KOO22132.1 374 ARAYNNYGNAKQALGEYHDAIRLHTTAIELMPT 406
                 78*****************************97 PP

  == domain 3  score: 18.1 bits;  conditional E-value: 2.1e-06
       TPR_2   2 ealynlGlayyklgdyeeAleafekAleldPnn 34 
                  a++nlG+a+++ g++ +A++ +ekA+ l P++
  KOO22132.1 409 TAYNNLGNALREVGQPVQAVAVLEKAVVLSPTY 441
                 59*****************************85 PP

  == domain 4  score: 0.0 bits;  conditional E-value: 1.4
       TPR_2   3 alynlGlayyklgdyeeAl 21 
                 a+ nlG a+ ++g ++ A+
  KOO22132.1 444 AYTNLGAAAQASGAPDHAV 462
                 899**********999886 PP

  == domain 5  score: 15.1 bits;  conditional E-value: 2e-05
       TPR_2   5 ynlGlayyklgdyeeAleafekAleldPn 33 
                 +nlG a++++g+ +eA +afe+ l+ +P+
  KOO22132.1 480 NNLGAALEANGQVAEAGAAFERGLAVAPT 508
                 79************************998 PP

  == domain 6  score: 23.1 bits;  conditional E-value: 5.6e-08
       TPR_2   5 ynlGlayyklgdyeeAleafekAleldPn 33 
                  nlG+ ++k+g++eeA++ + +Ale dP+
  KOO22132.1 514 INLGNTLRKRGRLEEAIQSYTAALEADPE 542
                 59*************************96 PP

  == domain 7  score: 17.6 bits;  conditional E-value: 3.2e-06
       TPR_2   2 ealynlGlayyklgdyeeAleafekAleldPn 33 
                  a++nl+ a  ++g+ ++Al+a+e+A++l P 
  KOO22132.1 548 LAYNNLAAAFQAAGESQRALQAYEAAIALRPA 579
                 79****************************97 PP

>> TPR_11  TPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.5   2.1   2.8e-11   2.5e-08       1      42 []     347     388 ..     347     388 .. 0.94
   2 !   23.0   0.0   5.3e-08   4.7e-05       1      38 [.     381     418 ..     381     422 .. 0.93
   3 !   22.9   0.2   5.7e-08   5.1e-05       1      41 [.     415     455 ..     415     456 .. 0.94
   4 ?    5.8   0.0     0.012        11      22      42 .]     470     490 ..     468     490 .. 0.89
   5 !   32.2   0.9   6.8e-11   6.1e-08       1      42 []     517     561 ..     517     561 .. 0.91
   6 !   10.2   1.5   0.00053      0.48       8      29 ..     561     582 ..     559     583 .. 0.87

  Alignments for each domain:
  == domain 1  score: 33.5 bits;  conditional E-value: 2.8e-11
      TPR_11   1 GdayyeqGkyeeAieaYkkAlkldPdnaeayynLGlayykqG 42 
                 G a+ + G++++Ai+++++A+ ldP++a+ay+n G+a +++G
  KOO22132.1 347 GAALKASGDLPAAIAEFEAAISLDPTYARAYNNYGNAKQALG 388
                 567889*******************************99988 PP

  == domain 2  score: 23.0 bits;  conditional E-value: 5.3e-08
      TPR_11   1 GdayyeqGkyeeAieaYkkAlkldPdnaeayynLGlay 38 
                 G+a  ++G+y +Ai    +A++l P+ ++ay+nLG+a+
  KOO22132.1 381 GNAKQALGEYHDAIRLHTTAIELMPTLVTAYNNLGNAL 418
                 888889******************************98 PP

  == domain 3  score: 22.9 bits;  conditional E-value: 5.7e-08
      TPR_11   1 GdayyeqGkyeeAieaYkkAlkldPdnaeayynLGlayykq 41 
                 G+a++e G+  +A+++++kA+ l+P++  ay nLG+a ++ 
  KOO22132.1 415 GNALREVGQPVQAVAVLEKAVVLSPTYTAAYTNLGAAAQAS 455
                 9***********************************97765 PP

  == domain 4  score: 5.8 bits;  conditional E-value: 0.012
      TPR_11  22 kldPdnaeayynLGlayykqG 42 
                 +l P ++++ +nLG+a+ ++G
  KOO22132.1 470 RLAPGDPTISNNLGAALEANG 490
                 567889************998 PP

  == domain 5  score: 32.2 bits;  conditional E-value: 6.8e-11
      TPR_11   1 GdayyeqGkyeeAieaYkkAlkldP...dnaeayynLGlayykqG 42 
                 G+ ++++G++eeAi++Y +Al+ dP   d + ay+nL++a+++ G
  KOO22132.1 517 GNTLRKRGRLEEAIQSYTAALEADPegvDAPLAYNNLAAAFQAAG 561
                 9************************66667889********9866 PP

  == domain 6  score: 10.2 bits;  conditional E-value: 0.00053
      TPR_11   8 GkyeeAieaYkkAlkldPdnae 29 
                 G+   A++aY++A++l+P +a+
  KOO22132.1 561 GESQRALQAYEAAIALRPADAS 582
                 66678**************996 PP

>> TPR_17  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.2   0.1       1.4   1.3e+03      15      33 ..     342     360 ..     340     361 .. 0.85
   2 !   21.8   0.4   1.8e-07   0.00016       2      33 ..     363     394 ..     362     395 .. 0.95
   3 !   19.0   0.0   1.4e-06    0.0013       2      33 ..     397     428 ..     396     429 .. 0.92
   4 ?    6.0   0.0      0.02        18       2      26 ..     431     455 ..     430     462 .. 0.86
   5 ?   -1.4   0.0       4.5     4e+03       9      21 ..     457     469 ..     454     475 .. 0.88
   6 ?    6.7   0.1     0.012        11       8      32 ..     471     495 ..     468     497 .. 0.89
   7 !   17.1   0.0   5.8e-06    0.0052       2      34 .]     499     531 ..     498     531 .. 0.96
   8 !   15.6   0.5   1.7e-05     0.015       2      34 .]     533     568 ..     532     568 .. 0.96
   9 ?   -0.8   0.0         3   2.7e+03       1      14 [.     569     582 ..     569     586 .. 0.85

  Alignments for each domain:
  == domain 1  score: 0.2 bits;  conditional E-value: 1.4
      TPR_17  15 aynnLAelllknGdlmtAr 33 
                 a  n++ +l+  Gdl  A+
  KOO22132.1 342 ARSNYGAALKASGDLPAAI 360
                 5679**********99887 PP

  == domain 2  score: 21.8 bits;  conditional E-value: 1.8e-07
      TPR_17   2 ylkaleldPnnadaynnLAelllknGdlmtAr 33 
                 ++ a+ ldP++a aynn++++   +G++ +A+
  KOO22132.1 363 FEAAISLDPTYARAYNNYGNAKQALGEYHDAI 394
                 89**************************9997 PP

  == domain 3  score: 19.0 bits;  conditional E-value: 1.4e-06
      TPR_17   2 ylkaleldPnnadaynnLAelllknGdlmtAr 33 
                  + a+el P+ + aynnL+++l++ G++ +A+
  KOO22132.1 397 HTTAIELMPTLVTAYNNLGNALREVGQPVQAV 428
                 67899************************996 PP

  == domain 4  score: 6.0 bits;  conditional E-value: 0.02
      TPR_17   2 ylkaleldPnnadaynnLAelllkn 26 
                 ++ka+ l P++  ay+nL+ +    
  KOO22132.1 431 LEKAVVLSPTYTAAYTNLGAAAQAS 455
                 5899***************987655 PP

  == domain 5  score: -1.4 bits;  conditional E-value: 4.5
      TPR_17   9 dPnnadaynnLAe 21 
                  P++a+ ++  A+
  KOO22132.1 457 APDHAVIWHSFAQ 469
                 59*******9886 PP

  == domain 6  score: 6.7 bits;  conditional E-value: 0.012
      TPR_17   8 ldPnnadaynnLAelllknGdlmtA 32 
                 l P ++   nnL+ +l+ nG+ ++A
  KOO22132.1 471 LAPGDPTISNNLGAALEANGQVAEA 495
                 569999999************9988 PP

  == domain 7  score: 17.1 bits;  conditional E-value: 5.8e-06
      TPR_17   2 ylkaleldPnnadaynnLAelllknGdlmtArq 34 
                 +++ l+  P++  +  nL+++l+k+G+l++A+q
  KOO22132.1 499 FERGLAVAPTSTTLRINLGNTLRKRGRLEEAIQ 531
                 899****************************98 PP

  == domain 8  score: 15.6 bits;  conditional E-value: 1.7e-05
      TPR_17   2 ylkaleldPnn...adaynnLAelllknGdlmtArq 34 
                 y+ ale dP     + aynnLA ++  +G++++A+q
  KOO22132.1 533 YTAALEADPEGvdaPLAYNNLAAAFQAAGESQRALQ 568
                 899*******9999********************97 PP

  == domain 9  score: -0.8 bits;  conditional E-value: 3
      TPR_17   1 lylkaleldPnnad 14 
                 +y+ a++l P +a 
  KOO22132.1 569 AYEAAIALRPADAS 582
                 59********9986 PP

>> TPR_12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.2   0.7     0.014        12      42      74 ..     337     369 ..     315     372 .. 0.74
   2 !   36.2   0.4   6.2e-12   5.5e-09       3      71 ..     374     434 ..     372     437 .. 0.96
   3 !   16.9   0.1   6.3e-06    0.0057       4      67 ..     409     464 ..     406     473 .. 0.88
   4 !    9.3   0.1    0.0015       1.4       5      33 ..     478     506 ..     474     511 .. 0.82
   5 !   39.1   3.7   7.4e-13   6.6e-10       4      76 ..     510     578 ..     507     579 .. 0.93

  Alignments for each domain:
  == domain 1  score: 6.2 bits;  conditional E-value: 0.014
      TPR_12  42 pltattlrnLgrlyralgryeeAlelleealai 74 
                 +++a ++ n+g ++ a+g++ +A++ +e a+ +
  KOO22132.1 337 EAAAGARSNYGAALKASGDLPAAIAEFEAAISL 369
                 556777888888888888888888888888765 PP

  == domain 2  score: 36.2 bits;  conditional E-value: 6.2e-12
      TPR_12   3 atalnnlaavlrrlgrydeAlellekaleiarrllGpdhpltattlrnLgrlyralgryeeAlelleea 71 
                 a+a+nn++++ ++lg+y++A++l+ +a+e++     p+   ++t+++nLg ++r+ g++ +A++ le+a
  KOO22132.1 374 ARAYNNYGNAKQALGEYHDAIRLHTTAIELM-----PT---LVTAYNNLGNALREVGQPVQAVAVLEKA 434
                 89*****************************.....85...9**************************9 PP

  == domain 3  score: 16.9 bits;  conditional E-value: 6.3e-06
      TPR_12   4 talnnlaavlrrlgrydeAlellekaleiarrllGpdhpltattlrnLgrlyralgryeeAlel 67 
                 ta+nnl+++lr+ g+  +A + leka+ +      p++    +++ nLg + +a+g ++ A+ +
  KOO22132.1 409 TAYNNLGNALREVGQPVQAVAVLEKAVVLS-----PTY---TAAYTNLGAAAQASGAPDHAVIW 464
                 79999*********************6666.....876...579************99999876 PP

  == domain 4  score: 9.3 bits;  conditional E-value: 0.0015
      TPR_12   5 alnnlaavlrrlgrydeAlellekaleia 33 
                 + nnl+a+l + g+ +eA + +e+ l++a
  KOO22132.1 478 ISNNLGAALEANGQVAEAGAAFERGLAVA 506
                 56789999999999999999999988876 PP

  == domain 5  score: 39.1 bits;  conditional E-value: 7.4e-13
      TPR_12   4 taln.nlaavlrrlgrydeAlellekaleiarrllGpdhpltattlrnLgrlyralgryeeAlelleealaiae 76 
                 t+l+ nl+++lr++gr++eA++ + +ale+      p+  ++  +++nL+ +++a+g+ + Al+++e a+a+++
  KOO22132.1 510 TTLRiNLGNTLRKRGRLEEAIQSYTAALEAD-----PEGVDAPLAYNNLAAAFQAAGESQRALQAYEAAIALRP 578
                 555669*************************.....9999999****************************986 PP

>> TPR_8  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.5   0.1    0.0003      0.27       5      33 ..     344     372 ..     340     373 .. 0.89
   2 !    9.2   0.1    0.0017       1.5       1      29 [.     374     402 ..     374     406 .. 0.85
   3 !   12.3   0.0   0.00017      0.15       2      33 ..     409     440 ..     408     441 .. 0.92
   4 ?    6.5   0.0     0.012        11       5      33 ..     480     508 ..     477     509 .. 0.92
   5 !   21.2   0.0   2.4e-07   0.00021       5      33 ..     514     542 ..     511     542 .. 0.94
   6 !   12.3   0.8   0.00018      0.16       3      34 .]     549     580 ..     548     580 .. 0.96

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.0003
                 HHHHHHHHHTT-HHHHHHHHHHHHHHHHH CS
       TPR_8   5 ynlgsiylklgdyeeAkeyyekaleldpd 33 
                  n g +++  gd+ +A++ +e a++ldp+
  KOO22132.1 344 SNYGAALKASGDLPAAIAEFEAAISLDPT 372
                 5789999*********************7 PP

  == domain 2  score: 9.2 bits;  conditional E-value: 0.0017
                 CCHHHHHHHHHHHTT-HHHHHHHHHHHHH CS
       TPR_8   1 aeayynlgsiylklgdyeeAkeyyekale 29 
                 a+ay+n g++ + lg+y+ A+     a+e
  KOO22132.1 374 ARAYNNYGNAKQALGEYHDAIRLHTTAIE 402
                 79******************976555555 PP

  == domain 3  score: 12.3 bits;  conditional E-value: 0.00017
                 CHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH CS
       TPR_8   2 eayynlgsiylklgdyeeAkeyyekaleldpd 33 
                  ay+nlg+++++ g+  +A++++eka+ l+p+
  KOO22132.1 409 TAYNNLGNALREVGQPVQAVAVLEKAVVLSPT 440
                 69************************988885 PP

  == domain 4  score: 6.5 bits;  conditional E-value: 0.012
                 HHHHHHHHHTT-HHHHHHHHHHHHHHHHH CS
       TPR_8   5 ynlgsiylklgdyeeAkeyyekaleldpd 33 
                 +nlg +++  g+  eA +++e+ l  +p+
  KOO22132.1 480 NNLGAALEANGQVAEAGAAFERGLAVAPT 508
                 79********************9999885 PP

  == domain 5  score: 21.2 bits;  conditional E-value: 2.4e-07
                 HHHHHHHHHTT-HHHHHHHHHHHHHHHHH CS
       TPR_8   5 ynlgsiylklgdyeeAkeyyekaleldpd 33 
                  nlg++++k g++eeA+++y  ale+dp+
  KOO22132.1 514 INLGNTLRKRGRLEEAIQSYTAALEADPE 542
                 69*************************96 PP

  == domain 6  score: 12.3 bits;  conditional E-value: 0.00018
                 HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH. CS
       TPR_8   3 ayynlgsiylklgdyeeAkeyyekaleldpdn 34 
                 ay+nl+ + +  g+ + A ++ye a+ l+p++
  KOO22132.1 549 AYNNLAAAFQAAGESQRALQAYEAAIALRPAD 580
                 7****************************985 PP

>> TPR_7  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.3   0.0       1.5   1.4e+03       8      32 ..     349     371 ..     344     372 .. 0.79
   2 !   13.0   0.1   9.1e-05     0.082       1      28 [.     376     403 ..     376     407 .. 0.89
   3 !   14.2   0.0   3.7e-05     0.033       1      32 [.     410     439 ..     410     440 .. 0.91
   4 ?   -2.6   0.0       8.9     8e+03       1      18 [.     444     461 ..     444     462 .. 0.78
   5 ?    3.5   0.0       0.1        90       3      33 ..     480     508 ..     477     510 .. 0.91
   6 !   19.7   0.0   6.6e-07    0.0006       3      34 ..     514     543 ..     511     545 .. 0.91
   7 !   18.1   1.0     2e-06    0.0018       1      34 [.     549     580 ..     549     582 .. 0.85

  Alignments for each domain:
  == domain 1  score: -0.3 bits;  conditional E-value: 1.5
       TPR_7   8 lysrlGdyeeAielyeqsLaltkdp 32 
                 +  + Gd   Ai  +e+  a+  dp
  KOO22132.1 349 ALKASGDLPAAIAEFEA--AISLDP 371
                 66678999999999999..777776 PP

  == domain 2  score: 13.0 bits;  conditional E-value: 9.1e-05
       TPR_7   1 aLlnLarlysrlGdyeeAielyeqsLal 28 
                 a++n +++ ++lG+y +Ai+l++ +++l
  KOO22132.1 376 AYNNYGNAKQALGEYHDAIRLHTTAIEL 403
                 79999*******************7766 PP

  == domain 3  score: 14.2 bits;  conditional E-value: 3.7e-05
       TPR_7   1 aLlnLarlysrlGdyeeAielyeqsLaltkdp 32 
                 a++nL+++ +++G+  +A+ ++e+  a+  +p
  KOO22132.1 410 AYNNLGNALREVGQPVQAVAVLEK--AVVLSP 439
                 79**********************..877665 PP

  == domain 4  score: -2.6 bits;  conditional E-value: 8.9
       TPR_7   1 aLlnLarlysrlGdyeeA 18 
                 a+ nL+ + ++ G  + A
  KOO22132.1 444 AYTNLGAAAQASGAPDHA 461
                 799***999988866665 PP

  == domain 5  score: 3.5 bits;  conditional E-value: 0.1
       TPR_7   3 lnLarlysrlGdyeeAielyeqsLaltkdpe 33 
                 +nL+ + ++ G+ +eA   +e+  +l+ +p+
  KOO22132.1 480 NNLGAALEANGQVAEAGAAFER--GLAVAPT 508
                 8*********************..9988775 PP

  == domain 6  score: 19.7 bits;  conditional E-value: 6.6e-07
       TPR_7   3 lnLarlysrlGdyeeAielyeqsLaltkdped 34 
                  nL+++ +++G+ eeAi+ y++  al+ dpe+
  KOO22132.1 514 INLGNTLRKRGRLEEAIQSYTA--ALEADPEG 543
                 59********************..99999987 PP

  == domain 7  score: 18.1 bits;  conditional E-value: 2e-06
       TPR_7   1 aLlnLarlysrlGdyeeAielyeqsLaltkdped 34 
                 a++nLa ++++ G+ ++A++ ye+  a++ +p d
  KOO22132.1 549 AYNNLAAAFQAAGESQRALQAYEA--AIALRPAD 580
                 79**********************..66555555 PP

>> TPR_14  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.1   0.2   1.8e-06    0.0016       3      41 ..     342     380 ..     340     382 .. 0.90
   2 !    9.0   0.0    0.0031       2.8       7      35 ..     373     401 ..     372     415 .. 0.82
   3 !   16.0   0.0   1.7e-05     0.015       7      43 ..     414     450 ..     408     452 .. 0.91
   4 !   17.4   0.1   6.4e-06    0.0057       7      42 ..     482     517 ..     481     519 .. 0.95
   5 !   13.3   0.5   0.00013      0.12       7      39 ..     516     551 ..     515     555 .. 0.81
   6 !   13.1   4.9   0.00015      0.14       6      37 ..     552     583 ..     547     588 .. 0.86
   7 ?   -0.1   0.2       2.6   2.3e+03      13      33 ..     664     684 ..     653     699 .. 0.75

  Alignments for each domain:
  == domain 1  score: 19.1 bits;  conditional E-value: 1.8e-06
      TPR_14   3 allalaeallalGdpdeAiallrralalaPddaeawlll 41 
                 a+  +++al a+Gd+ +Aia +++a++l+P+ a+a+  +
  KOO22132.1 342 ARSNYGAALKASGDLPAAIAEFEAAISLDPTYARAYNNY 380
                 566699****************************99766 PP

  == domain 2  score: 9.0 bits;  conditional E-value: 0.0031
      TPR_14   7 laeallalGdpdeAiallrralalaPdda 35 
                 +a+a+ + G+ ++A+  +++a++l+ +  
  KOO22132.1 373 YARAYNNYGNAKQALGEYHDAIRLHTTAI 401
                 79999999999999999999999887654 PP

  == domain 3  score: 16.0 bits;  conditional E-value: 1.7e-05
      TPR_14   7 laeallalGdpdeAiallrralalaPddaeawlllaq 43 
                 l+ al++ G+p +A+a+l++a+ l P+  +a++ l+ 
  KOO22132.1 414 LGNALREVGQPVQAVAVLEKAVVLSPTYTAAYTNLGA 450
                 899*****************************99985 PP

  == domain 4  score: 17.4 bits;  conditional E-value: 6.4e-06
      TPR_14   7 laeallalGdpdeAiallrralalaPddaeawllla 42 
                 l++al+a+G+ +eA a+++r la aP++ ++++ l+
  KOO22132.1 482 LGAALEANGQVAEAGAAFERGLAVAPTSTTLRINLG 517
                 799****************************99987 PP

  == domain 5  score: 13.3 bits;  conditional E-value: 0.00013
      TPR_14   7 laeallalGdpdeAiallrralalaP...ddaeawl 39 
                 l+  l+ +G+++eAi+ + +al+++P   d + a+ 
  KOO22132.1 516 LGNTLRKRGRLEEAIQSYTAALEADPegvDAPLAYN 551
                 68899********************95555555655 PP

  == domain 6  score: 13.1 bits;  conditional E-value: 0.00015
      TPR_14   6 alaeallalGdpdeAiallrralalaPddaea 37 
                  la+a+ a+G+ ++A++++++a+al P+da +
  KOO22132.1 552 NLAAAFQAAGESQRALQAYEAAIALRPADASL 583
                 599************************99853 PP

  == domain 7  score: -0.1 bits;  conditional E-value: 2.6
      TPR_14  13 alGdpdeAiallrralalaPd 33 
                 +   +++A+++++r + +aPd
  KOO22132.1 664 RTALYAAAARHAKRSIGRAPD 684
                 455678888999998888886 PP

>> TPR_10  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.2   0.2    0.0012       1.1       2      30 ..     340     368 ..     339     369 .. 0.95
   2 !   14.5   1.2   2.8e-05     0.025       2      31 ..     374     403 ..     374     404 .. 0.94
   3 !   20.6   0.0   3.2e-07   0.00029       3      29 ..     409     435 ..     407     438 .. 0.94
   4 ?    4.0   0.0     0.054        48       3      22 ..     443     462 ..     442     465 .. 0.88
   5 !    8.0   0.5     0.003       2.7       6      31 ..     480     505 ..     477     506 .. 0.92
   6 !   14.6   0.3   2.4e-05     0.022       6      30 ..     514     538 ..     511     539 .. 0.89
   7 !   12.9   4.7   8.7e-05     0.078       4      32 ..     549     577 ..     548     577 .. 0.96

  Alignments for each domain:
  == domain 1  score: 9.2 bits;  conditional E-value: 0.0012
      TPR_10   2 AsslnNLanalrqrgrydeAealleeala 30 
                 A +++N ++al + g++ +A a +e a++
  KOO22132.1 340 AGARSNYGAALKASGDLPAAIAEFEAAIS 368
                 7899***********************97 PP

  == domain 2  score: 14.5 bits;  conditional E-value: 2.8e-05
      TPR_10   2 AsslnNLanalrqrgrydeAealleealai 31 
                 A+++nN +na +++g+y++A +l+  a+++
  KOO22132.1 374 ARAYNNYGNAKQALGEYHDAIRLHTTAIEL 403
                 89*********************9999985 PP

  == domain 3  score: 20.6 bits;  conditional E-value: 3.2e-07
      TPR_10   3 sslnNLanalrqrgrydeAealleeal 29 
                 +++nNL+nalr++g+  +A+a le+a+
  KOO22132.1 409 TAYNNLGNALREVGQPVQAVAVLEKAV 435
                 89************************8 PP

  == domain 4  score: 4.0 bits;  conditional E-value: 0.054
      TPR_10   3 sslnNLanalrqrgrydeAe 22 
                 ++++NL++a ++ g  d A+
  KOO22132.1 443 AAYTNLGAAAQASGAPDHAV 462
                 69************999997 PP

  == domain 5  score: 8.0 bits;  conditional E-value: 0.003
      TPR_10   6 nNLanalrqrgrydeAealleealai 31 
                 nNL++al + g+ +eA a +e+ la+
  KOO22132.1 480 NNLGAALEANGQVAEAGAAFERGLAV 505
                 9*****************99998875 PP

  == domain 6  score: 14.6 bits;  conditional E-value: 2.4e-05
      TPR_10   6 nNLanalrqrgrydeAealleeala 30 
                  NL+n+lr+rgr++eA + +  al+
  KOO22132.1 514 INLGNTLRKRGRLEEAIQSYTAALE 538
                 6****************99988887 PP

  == domain 7  score: 12.9 bits;  conditional E-value: 8.7e-05
      TPR_10   4 slnNLanalrqrgrydeAealleealair 32 
                 ++nNLa+a ++ g+ ++A++ +e a+a+r
  KOO22132.1 549 AYNNLAAAFQAAGESQRALQAYEAAIALR 577
                 79************************986 PP

>> TPR_16  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.3   4.5     0.002       1.8      23      67 ..     332     373 ..     330     374 .. 0.89
   2 !   15.4   1.1   2.4e-05     0.022       6      55 ..     349     395 ..     347     405 .. 0.89
   3 !   18.8   0.0   2.1e-06    0.0019       4      66 ..     381     440 ..     378     442 .. 0.95
   4 !   14.1   0.4   6.5e-05     0.058      24      66 ..     469     508 ..     466     510 .. 0.89
   5 !   31.3  10.4   2.6e-10   2.3e-07       2      67 ..     515     580 ..     514     581 .. 0.96
   6 ?   -0.6   0.9       2.4   2.2e+03      50      66 ..     668     684 ..     660     691 .. 0.54

  Alignments for each domain:
  == domain 1  score: 9.3 bits;  conditional E-value: 0.002
      TPR_16  23 alkrdpssPdaaeAllllgdaalrqgrlaeAaalyraalraapda 67 
                 +++++    +aa A+ ++g a+ + g+l++A+a ++aa+  +p +
  KOO22132.1 332 YVAAA---EAAAGARSNYGAALKASGDLPAAIAEFEAAISLDPTY 373
                 56677...78999*************************9999875 PP

  == domain 2  score: 15.4 bits;  conditional E-value: 2.4e-05
      TPR_16   6 aalragdyddAaaaleaalkrdpssPdaaeAllllgdaalrqgrlaeAaa 55 
                 a+ ++gd ++A+a +eaa+ +d   P  a+A++++g+a  ++g++ +A+ 
  KOO22132.1 349 ALKASGDLPAAIAEFEAAISLD---PTYARAYNNYGNAKQALGEYHDAIR 395
                 66789*****************...*************999999999984 PP

  == domain 3  score: 18.8 bits;  conditional E-value: 2.1e-06
      TPR_16   4 araalragdyddAaaaleaalkrdpssPdaaeAllllgdaalrqgrlaeAaalyraalraapd 66 
                 ++a  ++g+y dA+++ ++a+++    P  + A+++lg+a+ + g    A+a++++a+  +p 
  KOO22132.1 381 GNAKQALGEYHDAIRLHTTAIELM---PTLVTAYNNLGNALREVGQPVQAVAVLEKAVVLSPT 440
                 678899******************...******************************988885 PP

  == domain 4  score: 14.1 bits;  conditional E-value: 6.5e-05
      TPR_16  24 lkrdpssPdaaeAllllgdaalrqgrlaeAaalyraalraapd 66 
                  +++   P ++  +++lg a+ ++g +aeA a++++ l+ ap 
  KOO22132.1 469 QRLA---PGDPTISNNLGAALEANGQVAEAGAAFERGLAVAPT 508
                 5667...9999*************************9998886 PP

  == domain 5  score: 31.3 bits;  conditional E-value: 2.6e-10
      TPR_16   2 alaraalragdyddAaaaleaalkrdpssPdaaeAllllgdaalrqgrlaeAaalyraalraapda 67 
                 +l++ ++++g+ ++A+  ++aal++dp+  da+ A+++l+ a+ ++g+ ++A+++y+aa++  p +
  KOO22132.1 515 NLGNTLRKRGRLEEAIQSYTAALEADPEGVDAPLAYNNLAAAFQAAGESQRALQAYEAAIALRPAD 580
                 799**********************************************************99987 PP

  == domain 6  score: -0.6 bits;  conditional E-value: 2.4
      TPR_16  50 laeAaalyraalraapd 66 
                 +a+Aa   ++ ++ apd
  KOO22132.1 668 YAAAARHAKRSIGRAPD 684
                 44444444444444444 PP

>> TPR_19  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.3   0.5   1.3e-06    0.0012       3      47 ..     352     396 ..     350     414 .. 0.92
   2 !    8.4   0.0    0.0033         3       3      44 ..     420     461 ..     418     464 .. 0.91
   3 !   26.2   0.3   9.6e-09   8.6e-06       3      57 ..     488     542 ..     486     556 .. 0.93
   4 ?    3.5   2.0      0.11     1e+02       3      28 ..     559     584 ..     557     590 .. 0.90

  Alignments for each domain:
  == domain 1  score: 19.3 bits;  conditional E-value: 1.3e-06
      TPR_19   3 aegdyaeAlalleqalqedpknaearllLAeallalgqldeAeal 47 
                 a+gd+ +A+a +e+a++ dp +a+a  ++ +a  alg++ +A++l
  KOO22132.1 352 ASGDLPAAIAEFEAAISLDPTYARAYNNYGNAKQALGEYHDAIRL 396
                 78****************************************987 PP

  == domain 2  score: 8.4 bits;  conditional E-value: 0.0033
      TPR_19   3 aegdyaeAlalleqalqedpknaearllLAeallalgqldeA 44 
                 + g++ +A+a le+a   +p + +a  +L  a  a+g +d A
  KOO22132.1 420 EVGQPVQAVAVLEKAVVLSPTYTAAYTNLGAAAQASGAPDHA 461
                 669**************************9999999998877 PP

  == domain 3  score: 26.2 bits;  conditional E-value: 9.6e-09
      TPR_19   3 aegdyaeAlalleqalqedpknaearllLAeallalgqldeAealLdalpeedpd 57 
                 a+g+ aeA a++e+ l+ +p +  +r++L + l + g+l+eA++   a++e+dp 
  KOO22132.1 488 ANGQVAEAGAAFERGLAVAPTSTTLRINLGNTLRKRGRLEEAIQSYTAALEADPE 542
                 79***************************************************97 PP

  == domain 4  score: 3.5 bits;  conditional E-value: 0.11
      TPR_19   3 aegdyaeAlalleqalqedpknaear 28 
                 a+g  ++Al+++e+a++  p +a ++
  KOO22132.1 559 AAGESQRALQAYEAAIALRPADASLA 584
                 78999***************998775 PP

>> Lipase_3  Lipase (class 3)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.3   0.0   1.7e-14   1.6e-11       2     140 ..     123     253 ..     122     255 .. 0.89
   2 ?   -3.4   0.0       8.7   7.8e+03      98     108 ..     709     719 ..     705     729 .. 0.81

  Alignments for each domain:
  == domain 1  score: 44.3 bits;  conditional E-value: 1.7e-14
                 EEE----------------EEE-HHHH-GTT-EEEHHHHHHHHS-HHHHHHHHHHHHHHHTT-EEEEEEEETHHHHHHHHHH.HHHHHTT-SS---EEE CS
    Lipase_3   2 vafRGtesakdwltdldfslteakellekeggkvhsgfleayeeslreqvlkelkrllekypeysivvtGHSLGgalAlLaa.ldlvengenekkkvtv 99 
                 ++fRGt s +d ++d+ f+++  ++     g++ h gfl+ ++     +++++lk  l      ++++ GHSLGgal+ ++a + +  +g     ++t+
  KOO22132.1 123 LVFRGTMSPTDAIADVMFRPEAGPN-----GVRCHGGFLRTVR--EDATLHAKLKMHLPGCD--ELYIFGHSLGGALSQVVAgAGFLPKGFG--GRLTI 210
                 79*******************9999.....89*********99..78899999999999999..99************76652667777765..9**** PP

                 EEES----..B-HHHHHHHHT-TTEEEEEEEETT--GGG-S-S CS
    Lipase_3 100 vtfGqPrv..gnkefaklvdsqlnkkvlrvvntnDivPrlppl 140
                 v +G P v  g  + a + + +   +v++vvn nDivPrl ++
  KOO22132.1 211 VNLGGPVVffGTPDAAAFDEPTAGARVMSVVNANDIVPRLLGC 253
                 ********888888888888777789*************9765 PP

  == domain 2  score: -3.4 bits;  conditional E-value: 8.7
                 EEEEES----B CS
    Lipase_3  98 tvvtfGqPrvg 108
                  ++tfG P vg
  KOO22132.1 709 AALTFGVPTVG 719
                 579******99 PP

>> TPR_9  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.1   1.5    0.0032       2.8      15      64 ..     326     375 ..     314     396 .. 0.72
   2 !    7.8   0.1    0.0039       3.5       7      50 ..     352     395 ..     347     413 .. 0.77
   3 ?    2.3   0.1      0.22   1.9e+02      22      65 ..     401     444 ..     385     454 .. 0.81
   4 ?    2.7   0.0      0.16   1.4e+02       5      49 ..     418     462 ..     414     478 .. 0.78
   5 !   20.6   0.1   4.1e-07   0.00037       3      68 ..     484     549 ..     482     554 .. 0.91
   6 ?    5.5   1.1     0.022        19       4      31 ..     556     583 ..     553     587 .. 0.68

  Alignments for each domain:
  == domain 1  score: 8.1 bits;  conditional E-value: 0.0032
       TPR_9  15 lavverllllaPddpeerrdRGlllaqlGclsaAladLeaylalapdapd 64 
                 +a     ++ a  +++ r   G +l  +G+l aA+a++ea+++l+p  + 
  KOO22132.1 326 IADHLTYVAAAEAAAGARSNYGAALKASGDLPAAIAEFEAAISLDPTYAR 375
                 55555555556667778888888888999999999999999999885444 PP

  == domain 2  score: 7.8 bits;  conditional E-value: 0.0039
       TPR_9   7 reedweralavverllllaPddpeerrdRGlllaqlGclsaAla 50 
                  + d ++a+a  e  + l+P  ++ +   G + + lG ++ A++
  KOO22132.1 352 ASGDLPAAIAEFEAAISLDPTYARAYNNYGNAKQALGEYHDAIR 395
                 56688888888888999999999999999999999999998887 PP

  == domain 3  score: 2.3 bits;  conditional E-value: 0.22
       TPR_9  22 lllaPddpeerrdRGlllaqlGclsaAladLeaylalapdapda 65 
                 + l P  +  +   G +l ++G++ +A+a Le ++ l+p   +a
  KOO22132.1 401 IELMPTLVTAYNNLGNALREVGQPVQAVAVLEKAVVLSPTYTAA 444
                 56677778888889999999**************9999965555 PP

  == domain 4  score: 2.7 bits;  conditional E-value: 0.16
       TPR_9   5 aireedweralavverllllaPddpeerrdRGlllaqlGclsaAl 49 
                 + +  +  +a av+e  ++l P     +   G + + +G++  A+
  KOO22132.1 418 LREVGQPVQAVAVLEKAVVLSPTYTAAYTNLGAAAQASGAPDHAV 462
                 555667778999999999999999999999999999999888876 PP

  == domain 5  score: 20.6 bits;  conditional E-value: 4.1e-07
       TPR_9   3 aiaireedweralavverllllaPddpeerrdRGlllaqlGclsaAladLeaylalapdapdaeai 68 
                 a++  + + ++a a+ er l++aP +  +r   G  l ++G+l++A++   a+l+ +p+  da ++
  KOO22132.1 484 AALEANGQVAEAGAAFERGLAVAPTSTTLRINLGNTLRKRGRLEEAIQSYTAALEADPEGVDAPLA 549
                 6678889999************************************************99888665 PP

  == domain 6  score: 5.5 bits;  conditional E-value: 0.022
       TPR_9   4 iaireedweralavverllllaPddpee 31 
                 + + + +++ral+++e  ++l P d+++
  KOO22132.1 556 AFQAAGESQRALQAYEAAIALRPADASL 583
                 4466677777777777777777777764 PP

>> TPR_15  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.2   2.0   0.00034       0.3     152     233 ..     373     454 ..     328     455 .. 0.92
   2 !   15.3   3.6   9.7e-06    0.0087     152     249 ..     482     582 ..     465     586 .. 0.80

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.00034
      TPR_15 152 raelyrqegqtdaAlrdyreAlalapdsselraallWlliDlgrraeLrellkawkara..esdasLwgplaaAlllLgrpkkA 233
                 +a++y + g+ ++Al  y  A++l  +  el  +l+ ++++lg  + Lre+ +  +a a  e+  +L + ++aA+  Lg  ++A
  KOO22132.1 373 YARAYNNYGNAKQALGEYHDAIRLHTTAIELMPTLVTAYNNLG--NALREVGQPVQAVAvlEKAVVLSPTYTAAYTNLGAAAQA 454
                 8999***************************************..5589*99999999999999***************99988 PP

  == domain 2  score: 15.3 bits;  conditional E-value: 9.7e-06
      TPR_15 152 raelyrqegqtdaAlrdyreAlalapdsselraallWlliDlgrrae.Lrellkawkara.esdasL.wgplaaAlllLgrpkkALeylrkqakenrkd 247
                 ++++ +++gq ++A  +++++la+ap+s++lr +l  +l  +gr +e ++++ +a++a+    da+L ++ laaA ++ g++++AL+ +++  + +++d
  KOO22132.1 482 LGAALEANGQVAEAGAAFERGLAVAPTSTTLRINLGNTLRKRGRLEEaIQSYTAALEADPeGVDAPLaYNNLAAAFQAAGESQRALQAYEAAIALRPAD 580
                 566778899999999999999999999999999999999999988876667777777766645556536789999999999999999999999988888 PP

      TPR_15 248 pl 249
                 ++
  KOO22132.1 581 AS 582
                 75 PP

>> TPR_4  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.5   0.3    0.0085       7.7       2      25 ..     341     364 ..     340     365 .. 0.89
   2 ?    0.7   0.1       1.3   1.2e+03       1      22 [.     374     395 ..     374     396 .. 0.86
   3 !    9.7   0.0    0.0017       1.5       3      25 ..     410     432 ..     408     433 .. 0.91
   4 ?    0.4   0.7       1.6   1.5e+03       2      20 ..     443     461 ..     442     462 .. 0.86
   5 ?    5.9   0.6     0.028        25       6      26 .]     481     501 ..     479     501 .. 0.94
   6 !    7.4   0.0    0.0087       7.8       4      20 ..     513     529 ..     511     531 .. 0.93
   7 ?    5.1   1.9     0.051        46       2      25 ..     548     571 ..     547     572 .. 0.89

  Alignments for each domain:
  == domain 1  score: 7.5 bits;  conditional E-value: 0.0085
       TPR_4   2 rallaLArallalGdldeAralle 25 
                  a+++++ al a Gdl++A a +e
  KOO22132.1 341 GARSNYGAALKASGDLPAAIAEFE 364
                 69*****************88776 PP

  == domain 2  score: 0.7 bits;  conditional E-value: 1.3
       TPR_4   1 arallaLArallalGdldeAra 22 
                 ara+ +++ a +alG++ +A +
  KOO22132.1 374 ARAYNNYGNAKQALGEYHDAIR 395
                 68889999999*****999965 PP

  == domain 3  score: 9.7 bits;  conditional E-value: 0.0017
       TPR_4   3 allaLArallalGdldeAralle 25 
                 a+ +L+ al + G++ +A a+le
  KOO22132.1 410 AYNNLGNALREVGQPVQAVAVLE 432
                 6679******************9 PP

  == domain 4  score: 0.4 bits;  conditional E-value: 1.6
       TPR_4   2 rallaLArallalGdldeA 20 
                 +a+ +L+ a++a G +d A
  KOO22132.1 443 AAYTNLGAAAQASGAPDHA 461
                 6889*********988877 PP

  == domain 5  score: 5.9 bits;  conditional E-value: 0.028
       TPR_4   6 aLArallalGdldeAraller 26 
                 +L+ al a G+ +eA a++er
  KOO22132.1 481 NLGAALEANGQVAEAGAAFER 501
                 79***************9997 PP

  == domain 6  score: 7.4 bits;  conditional E-value: 0.0087
       TPR_4   4 llaLArallalGdldeA 20 
                 +++L+ +l  +G+l+eA
  KOO22132.1 513 RINLGNTLRKRGRLEEA 529
                 89**************9 PP

  == domain 7  score: 5.1 bits;  conditional E-value: 0.051
       TPR_4   2 rallaLArallalGdldeAralle 25 
                  a+ +LA a +a+G++ +A+++ e
  KOO22132.1 548 LAYNNLAAAFQAAGESQRALQAYE 571
                 67889***************9987 PP

>> Abhydrolase_6  Alpha/beta hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.8   1.2   1.8e-05     0.016      50     177 ..     159     316 ..     127     357 .. 0.55
   2 ?    2.4   2.5      0.23   2.1e+02      62     126 ..     681     772 ..     640     810 .. 0.57

  Alignments for each domain:
  == domain 1  score: 15.8 bits;  conditional E-value: 1.8e-05
                    CHHHHHHHCCTT.....TTSEEEEEETCHHHHHHHHHHCC.............EEEEES-..----TTT.........S----TTHHHHHHTT-C. CS
  Abhydrolase_6  50 ladlaalldelaa...gggpvvlvGHSlGGalalaaapla...........lvvgvlldppptalpagl.........laaalelllallallrl. 121
                    ++++a l ++l++   g+++ +++GHSlGGal++ +a +            +   v l +p++++++++         +a++++++ a   + rl 
     KOO22132.1 159 VREDATLHAKLKMhlpGCDELYIFGHSLGGALSQVVAGAGflpkgfggrltI---VNLGGPVVFFGTPDaaafdeptaGARVMSVVNANDIVPRLl 251
                    566677888888899999*************888844444888776653330...44444443333333111122122333333333333322222 PP

                    ...CCCHCCHS-HSCCCCHHHC..CCCHCHCCCGHHHHCCHHCHTTCCHHTT-TTGC........EEEC CS
  Abhydrolase_6 122 ...lawlsreplprlfladeda..daawrarlarlaallaglgllpaaawadlpvpl........lvlg 177
                       l ++++ +l+ lf a ++   +++  a l++l +++ ++g+     +++   ++        lvl+
     KOO22132.1 252 gcpLSFSRK-LLS-LFAASNSHkkQREQEAILDTLEQYQGFPGFEL--LFMHGGKAYevppkhrhLVLH 316
                    232222221.222.44444442458888888888887777666433..333333333333344454443 PP

  == domain 2  score: 2.4 bits;  conditional E-value: 0.23
                    ...........TTSEEEEEETCH..HHHHHHHHHCC.................EEEEES-..----TTTS----TTHHHHHHTT-C.CCCHC CS
  Abhydrolase_6  62 a.........gggpvvlvGHSlG..Galalaaapla...............lvvgvlldppptalpagllaaalelllallallrl.lawls 126
                                ++vv++G S G  ++la++++ ++               +v++ l  p + +      a a++l+ a+  ++++  aw++
     KOO22132.1 681 RapdgakvpdAERAVVVLGSSIGfeAYLAALTFGVPtvgvellpglvelseDVRSSLQVPESIVKFECADALAFRLPTAAALVYVDdTAWDV 772
                    255555566455777**********9999996666644444444444444332334444433222222233333333333333333235553 PP

>> TPR_6  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.5   0.0       1.3   1.2e+03       7      31 ..     347     371 ..     342     373 .. 0.78
   2 ?    0.7   0.1       1.2   1.1e+03       7      28 ..     374     395 ..     372     397 .. 0.76
   3 ?    3.8   0.0      0.12   1.1e+02       5      28 ..     413     436 ..     410     440 .. 0.85
   4 ?    1.2   0.0      0.81   7.2e+02       6      25 ..     482     501 ..     481     509 .. 0.88
   5 ?    4.8   0.0     0.059        53       5      31 ..     515     541 ..     513     542 .. 0.88
   6 ?    7.2   1.5    0.0097       8.7       5      31 ..     552     578 ..     549     580 .. 0.90

  Alignments for each domain:
  == domain 1  score: 0.5 bits;  conditional E-value: 1.3
                 HHHHHHHHHHHHHHHHHHHHHHH-T CS
       TPR_6   7 alsyrklgdtdkAlealerlikeYP 31 
                 + ++++ gd  +A++ +e  i+  P
  KOO22132.1 347 GAALKASGDLPAAIAEFEAAISLDP 371
                 55566657***********999887 PP

  == domain 2  score: 0.7 bits;  conditional E-value: 1.2
                 HHHHHHHHHHHHHHHHHHHHHH CS
       TPR_6   7 alsyrklgdtdkAlealerlik 28 
                 a++y + g++ +Al  + + i+
  KOO22132.1 374 ARAYNNYGNAKQALGEYHDAIR 395
                 7888886799999888877775 PP

  == domain 3  score: 3.8 bits;  conditional E-value: 0.12
                 HHHHHHHHHHHHHHHHHHHHHHHH CS
       TPR_6   5 klalsyrklgdtdkAlealerlik 28 
                 +l+ ++r+ g++ +A++ le+ + 
  KOO22132.1 413 NLGNALREVGQPVQAVAVLEKAVV 436
                 689999*966**********9875 PP

  == domain 4  score: 1.2 bits;  conditional E-value: 0.81
                 HHHHHHHHHHHHHHHHHHHH CS
       TPR_6   6 lalsyrklgdtdkAlealer 25 
                 l+ ++++ g+ ++A +a+er
  KOO22132.1 482 LGAALEANGQVAEAGAAFER 501
                 788999989*********98 PP

  == domain 5  score: 4.8 bits;  conditional E-value: 0.059
                 HHHHHHHHHHHHHHHHHHHHHHHHH-T CS
       TPR_6   5 klalsyrklgdtdkAlealerlikeYP 31 
                 +l+  +rk g+ ++A++ +   ++  P
  KOO22132.1 515 NLGNTLRKRGRLEEAIQSYTAALEADP 541
                 6899999989*********99998877 PP

  == domain 6  score: 7.2 bits;  conditional E-value: 0.0097
                 HHHHHHHHHHHHHHHHHHHHHHHHH-T CS
       TPR_6   5 klalsyrklgdtdkAlealerlikeYP 31 
                 +la +++++g++++Al+a+e  i   P
  KOO22132.1 552 NLAAAFQAAGESQRALQAYEAAIALRP 578
                 5889999999***********998877 PP

>> BTAD  Bacterial transcriptional activator domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   1.4   0.00033       0.3      48     133 ..     319     404 ..     300     412 .. 0.87
   2 ?    3.7   0.1     0.085        76      57     115 ..     403     461 ..     395     473 .. 0.84
   3 ?    5.7   2.4     0.021        19      73     122 ..     521     573 ..     508     578 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.00033
                 TTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS-- CS
        BTAD  48 ewleaererleelrlealealaeaelrlGraeealaelealvaehPlrErlhrqlmrAlarsGrqaeALevYerlrrlLaeeLgve 133
                 e l++++ + +   ++a ea a a++ +G a +a ++l a++ae      l     rA+   G+  +AL+ Y+++ rl  + + + 
  KOO22132.1 319 EALHPRCIADHLTYVAAAEAAAGARSNYGAALKASGDLPAAIAEFEAAISLDPTYARAYNNYGNAKQALGEYHDAIRLHTTAIELM 404
                 5677777777888899*********************************************************9988877666555 PP

  == domain 2  score: 3.7 bits;  conditional E-value: 0.085
                 HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHH CS
        BTAD  57 leelrlealealaeaelrlGraeealaelealvaehPlrErlhrqlmrAlarsGrqaeA 115
                 l    ++a+  l +a+ ++G+  +a+a le++v + P+  +++  l +A  +sG    A
  KOO22132.1 403 LMPTLVTAYNNLGNALREVGQPVQAVAVLEKAVVLSPTYTAAYTNLGAAAQASGAPDHA 461
                 555678899999999999********************999999999999999987666 PP

  == domain 3  score: 5.7 bits;  conditional E-value: 0.021
                 HHTT-HHHHHHHHHHHHHHSTT-HH...HHHHHHHHHHHTT-HHHHHHHHHHH CS
        BTAD  73 lrlGraeealaelealvaehPlrEr...lhrqlmrAlarsGrqaeALevYerl 122
                  + Gr eea++ ++a+++++P   +   ++  l +A  + G+ + AL++Ye +
  KOO22132.1 521 RKRGRLEEAIQSYTAALEADPEGVDaplAYNNLAAAFQAAGESQRALQAYEAA 573
                 5679*****************86542236899999999************987 PP

>> NARP1  NMDA receptor-regulated protein 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.8   0.0    0.0015       1.3     204     253 ..     386     435 ..     345     440 .. 0.88
   2 ?    8.0   0.0    0.0013       1.1     205     253 ..     387     435 ..     373     499 .. 0.78
   3 ?    0.2   0.1       0.3   2.6e+02     206     253 ..     524     574 ..     485     587 .. 0.57

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 0.0015
                 HHT-SHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHH CS
       NARP1 204 klgsrekAleyidkaiehtptlvelyltKarilkhaGdlkkAaevmeear 253
                  lg+++ A+++  +aie  ptlv  y + ++ l+  G++ +A++v+e+a 
  KOO22132.1 386 ALGEYHDAIRLHTTAIELMPTLVTAYNNLGNALREVGQPVQAVAVLEKAV 435
                 4778999****************************************995 PP

  == domain 2  score: 8.0 bits;  conditional E-value: 0.0013
                 HT-SHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHH CS
       NARP1 205 lgsrekAleyidkaiehtptlvelyltKarilkhaGdlkkAaevmeear 253
                 lg+++ A+++  +aie  ptlv  y + ++ l+  G++ +A++v+e+a 
  KOO22132.1 387 LGEYHDAIRLHTTAIELMPTLVTAYNNLGNALREVGQPVQAVAVLEKAV 435
                 5667778888888888888888888888888888888888888888774 PP

  == domain 3  score: 0.2 bits;  conditional E-value: 0.3
                 T-SHHHHHHHHHHHHH-TT-HHH...HHHHHHHHHHTT-HHHHHHHHHHHH CS
       NARP1 206 gsrekAleyidkaiehtptlvel...yltKarilkhaGdlkkAaevmeear 253
                 g+ e+A++   +a+e +p+ v+    y + a  ++ aG+ ++A ++ e a 
  KOO22132.1 524 GRLEEAIQSYTAALEADPEGVDAplaYNNLAAAFQAAGESQRALQAYEAAI 574
                 334444444444444444444421113333444444444444444444443 PP

>> TPR_20  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.3   0.7         1   9.3e+02       7      42 ..     359     394 ..     327     402 .. 0.60
   2 ?    8.7   0.5    0.0025       2.2       9      80 ..     497     569 ..     489     575 .. 0.85

  Alignments for each domain:
  == domain 1  score: 0.3 bits;  conditional E-value: 1
      TPR_20   7 elaeleaalaanpddldarldlAlallaagryeeAl 42 
                  +ae+eaa+  +p+   a  ++ +a  a g+y +A+
  KOO22132.1 359 AIAEFEAAISLDPTYARAYNNYGNAKQALGEYHDAI 394
                 344555555555555555555555555555555554 PP

  == domain 2  score: 8.7 bits;  conditional E-value: 0.0025
      TPR_20   9 aeleaalaanpddldarldlAlallaagryeeAleqLleilkrdrkw.eddaarkqllkifealgsqdplvak 80 
                 a++e+ la +p+   +r++l + l ++gr eeA++   + l++d +  +   a + l + f+a+g++  + ++
  KOO22132.1 497 AAFERGLAVAPTSTTLRINLGNTLRKRGRLEEAIQSYTAALEADPEGvDAPLAYNNLAAAFQAAGESQRALQA 569
                 6788999999*******************************99976437778999999999999988766655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (830 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       604  (0.0336884); expected 358.6 (0.02)
Passed bias filter:                      453  (0.0252663); expected 358.6 (0.02)
Passed Vit filter:                        52  (0.00290033); expected 17.9 (0.001)
Passed Fwd filter:                        22  (0.00122706); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              20  [number of targets reported over threshold]
# CPU time: 0.79u 0.33s 00:00:01.12 Elapsed: 00:00:00.53
# Mc/sec: 4710.86
//
Query:       KOO22133.1  [L=262]
Description: hypothetical protein Ctob_005505 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    0.00011   21.9   0.0    0.00031   20.5   0.0    1.9  1  RRM_1     RNA recognition motif. (a.k.a. RRM, RBD, or RNP dom


Domain annotation for each model (and alignments):
>> RRM_1  RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.5   0.0   1.8e-08   0.00031       1      62 [.     189     249 ..     189     258 .. 0.88

  Alignments for each domain:
  == domain 1  score: 20.5 bits;  conditional E-value: 1.8e-08
                 EEEESETTTSSHHHHHHHHHTTSCEEEEEEEEETTTSEEEEEEEEESSHHHHHHHHHHHTTE CS
       RRM_1   1 lfVgnLppdvteeeLkelFskfGpiksiklvrdetgkskgfafVeFeskedAekAlealngk 62 
                 lf +++p+++ e  +k+ +++fG+ k+++    + +    ++  eFe+ke+Ae+A+++++g 
  KOO22133.1 189 LFFSGFPSNMGEGAVKMTLEGFGKLKDFTCEE-SEDGMSLTGRAEFETKEAAEAAIKKYDGV 249
                 567899********************999999.57777789*******************94 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (262 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       695  (0.038764); expected 358.6 (0.02)
Passed bias filter:                      614  (0.0342462); expected 358.6 (0.02)
Passed Vit filter:                        49  (0.002733); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.24s 00:00:00.73 Elapsed: 00:00:00.42
# Mc/sec: 1868.92
//
Query:       KOO22134.1  [L=482]
Description: ded1p [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.2e-49  168.4   0.0    2.4e-49  167.5   0.0    1.5  1  DEAD        DEAD/DEAH box helicase
    5.6e-20   71.7   0.0    3.3e-19   69.3   0.0    2.0  2  Helicase_C  Helicase conserved C-terminal domain
     0.0029   17.9   0.2       0.68   10.2   0.0    2.6  2  AAA_22      AAA domain
  ------ inclusion threshold ------
      0.031   14.7   3.2      0.081   13.3   3.2    1.7  1  IATP        Mitochondrial ATPase inhibitor, IATP
      0.032   14.2   0.0      0.062   13.3   0.0    1.4  1  ResIII      Type III restriction enzyme, res subunit


Domain annotation for each model (and alignments):
>> DEAD  DEAD/DEAH box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  167.5   0.0   6.6e-53   2.4e-49       1     175 [.     149     327 ..     149     328 .. 0.95

  Alignments for each domain:
  == domain 1  score: 167.5 bits;  conditional E-value: 6.6e-53
                 -HHHHHHHHHHHTTCEEEEEESTTSSHHHHHHHHHHHHHHHS.........TTSTS-EEEEEESSHHHHHHHHHHHHHHTTTSTSEEEEEETTSSHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.........xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD   1 tdiQaeaiplilgggdvlvaaeTGsGKTlaflipvlqivyet.........kgktgpkalivePtreLaeqtlnnlkkfkkyidlrvlliiggvaardq 90 
                 t+iQ++a+pl+l g d++++a+TGsGKT+aflipv++++++           g  +p+a+i++PtreLa q+  +++k+++   lr ++++gg ++r+q
  KOO22134.1 149 TPIQRHAVPLALAGCDLMCCAQTGSGKTAAFLIPVCSSLSSPaaggttvgqPGAAKPRAVIMAPTRELASQIELEAQKLTNRSPLRSVAVYGGADQRKQ 247
                 89*************************************87799999999889999*************************999*************** PP

                 HHHHHTTCSEEEEEHHHHHHHHHCTSSHCTTEEEEEEETHHHHHHTTTHHHHHHHHHHSHHHCTTSTTTSEEEEEESSBSHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD  91 lskldngvdivvgtpgrlddllstgklnlsqvrflVlDEadrlldqgfsdfinrilnqlpqitcdgklqrqvivlSATlpkdvkk 175
                  ++l  gvd++v+tpgrl d++++g ++l+ +rflVlDEadr+ld+gf+++i+ri++++p +     ++r+++++SAT+p  +++
  KOO22134.1 248 ARELALGVDLIVATPGRLNDFVERGLVELRGCRFLVLDEADRMLDMGFEPQIRRIVRTMPAA-----AERHTLLFSATFPAPIQQ 327
                 ***********************************************************744.....44669*******987765 PP

>> Helicase_C  Helicase conserved C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.5   0.0      0.43   1.5e+03      17      56 ..     205     248 ..     201     261 .. 0.72
   2 !   69.3   0.0   9.1e-23   3.3e-19       5     103 ..     368     479 ..     363     481 .. 0.82

  Alignments for each domain:
  == domain 1  score: -0.5 bits;  conditional E-value: 0.43
                 SEEEEEESSHH...HHHH...HHHHHHHTTSTEEEESTTSTHHHHH CS
  Helicase_C  17 gkilifvntid...rlek...vklllekkgikvavlhgelpqnere 56 
                  +++i+++t++   +      ++ l++++ +++++++g   q+++ 
  KOO22134.1 205 PRAVIMAPTRElasQ--IeleAQKLTNRSPLRSVAVYGGADQRKQA 248
                 678999999995553..13467777777789999999987777665 PP

  == domain 2  score: 69.3 bits;  conditional E-value: 9.1e-23
                 HHHHHHHHTTTTSEEEEEESSHHHHHH.HHHH..........HHHT.TSTEEEESTTSTHHHHHHHHHHHHTTSSSEEEESGGGTSSSTSTTESEEEES CS
  Helicase_C   5 allellkleeeggkilifvntidrlek.vkll..........lekk.gikvavlhgelpqnereeileqfnkgesdvLiatdvaerGidipkvnlVinf 91 
                  +++ l    + g++l+fv++++++    k l          +e++  i +  +hg+ +q++re++l++f++g+++vL+atdva+rG+d+p+v++Vin+
  KOO22134.1 368 LVVKAL--ADRSGRSLVFVEKKRTATWlKKTLrhggpaeggeEERFePIAAEDIHGDRSQSQREAALAAFRSGSCRVLVATDVAARGLDVPGVEHVINM 464
                 444554..7899***********9954444447788888876555577*************************************************** PP

                 SSS...SSHHHHHHH CS
  Helicase_C  92 dlp...rnvtsyiqr 103
                 dlp   ++ +s+ qr
  KOO22134.1 465 DLPfarEDFDSVDQR 479
                 ***655446666666 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.7   0.2    0.0093        33       8      20 ..     165     177 ..     163     180 .. 0.90
   2 !   10.2   0.0   0.00019      0.68      37     115 ..     226     302 ..     193     318 .. 0.67

  Alignments for each domain:
  == domain 1  score: 4.7 bits;  conditional E-value: 0.0093
      AAA_22   8 lvvtGesGtGKTt 20 
                 l++++++G+GKT 
  KOO22134.1 165 LMCCAQTGSGKTA 177
                 68**********7 PP

  == domain 2  score: 10.2 bits;  conditional E-value: 0.00019
      AAA_22  37 e..erpevvfvtlpsstsskdllrellralglelkaerlsseellealeqalraravielliiDEaqh.lrseealeeLrsl 115
                 +  +r+++ +v + ++ ++++ +rel+  ++l   + ++++ +++e+    lr ++   +l++DEa++ l  +    ++r++
  KOO22134.1 226 KltNRSPLRSVAVYGGADQRKQARELALGVDLIVAT-PGRLNDFVERGLVELRGCR---FLVLDEADRmL-DMGFEPQIRRI 302
                 144666666777777778888888888888887777.7777777777777777775...5********66.44333333333 PP

>> IATP  Mitochondrial ATPase inhibitor, IATP
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   3.2   2.3e-05     0.081      31      96 ..      14      92 ..       8      94 .. 0.83

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 2.3e-05
        IATP 31 gdsGapkgtGggGsi.......reagdafgkrEaA......sEeeyirqrekekLaeLkeklaeqkeHleeleeHieai 96
                 d Gap+g G gG +       +++   ++k+ aA      sE+ey++q +++ L++   k a      +e ++H++a+
  KOO22134.1 14 ADRGAPPGRGRGGGVgaplgrqDRKESKWSKQQAAeaardrSEDEYFKQCQAQALRSGEAKKAAAGLTGQEADAHEKAL 92
                689************9****98666667888766633355569*************99999998888889999998876 PP

>> ResIII  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.0   1.7e-05     0.062      31     170 ..     169     322 ..     163     323 .. 0.79

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 1.7e-05
                 ESTTSTHHHHH.HHHHHHH-S.................-EEEEESSHHHHHHHHHHGGGGTGG....GEEEESSS-B--........-SEEEEEHHHHH CS
      ResIII  31 maTGtGKTlva.aklierllkkgkee............kflflvprkslleqtleefkkflseaykeigkkvsgdkkka.kekdstnkkilvttiqsld 115
                 + TG+GKT    + ++ +l++ +               ++++++p+++l +q + e +k+++    +   ++ g  +++  ++ +   +++v+t  +l+
  KOO22134.1 169 AQTGSGKTAAFlIPVCSSLSSPAA-GgttvgqpgaakpRAVIMAPTRELASQIELEAQKLTNRSPLRSVAVYGGADQRKqARELALGVDLIVATPGRLN 266
                 57******9996777777776544.2599*************************8888888888777555555544444356788999*********** PP

                 HTH........HHHTTT-SEEEEETGGGTTS....TTTHHHHHT---...SEEEEEESS-S CS
      ResIII 116 adseeeeeeseellrdrfdviiiDEaHrlgak...kswreilekfke...avllglTATpe 170
                         e+   +     +++ DEa r+ ++    ++r+i++ +++      l ++AT++
  KOO22134.1 267 DFV-----ERGLVELRGCRFLVLDEADRMLDMgfePQIRRIVRTMPAaaeRHTLLFSATFP 322
                 **9.....666777777778999********977659999966664434489999999985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (482 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       558  (0.0311228); expected 358.6 (0.02)
Passed bias filter:                      396  (0.0220871); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.51u 0.29s 00:00:00.80 Elapsed: 00:00:00.43
# Mc/sec: 3342.18
//
Query:       KOO22135.1  [L=225]
Description: peptide deformylase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.8e-49  167.4   0.0    2.2e-49  167.1   0.0    1.1  1  Pep_deformylase  Polypeptide deformylase


Domain annotation for each model (and alignments):
>> Pep_deformylase  Polypeptide deformylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  167.1   0.0   1.2e-53   2.2e-49       3     157 ..      49     199 ..      47     201 .. 0.97

  Alignments for each domain:
  == domain 1  score: 167.1 bits;  conditional E-value: 1.2e-53
                      G---TT-GGGCS--B---BSSHHHHHHHHHHHHHHHHHCT-SEEEGGGGT--BSEEEEECCSS-ETT....SEEEEEEEEEEECSCEEECCEE- CS
  Pep_deformylase   3 kivkvgdpvLrekakpvekfeskelekllekmletmkeakgvgLAApQigvnkrlfvielpseeeeeeenkeltvliNPkitskseetitdeEg 96 
                      +i+++++p+Lr++  +v++f+++ l++l ++m++ m++++gvgLAApQ g+nkrl+v++ + + +++ ++    vl+NP+i++ s  t  +eEg
       KOO22135.1  49 RILEYPHPLLRAPNADVTEFDDE-LKQLTKEMFDIMYASRGVGLAAPQLGINKRLMVFNPEGDPKKWLSE---LVLCNPEIEEYSTSTALEEEG 138
                      79*******************88.*****************************************99886...8******************** PP

                      -TTSTT--CEEEEESCEEEEEE-TTS-EEEEEEEHHHHHHHHHHHHHCTT--GGGGC-TTX CS
  Pep_deformylase  97 ClSvpgieakVeRskrikvkyldltgkeveleaegllArvlqHEiDhlnGklfidridkse 157
                      ClS+pg++a+V Rs++i+vk++ l+gk  + +++g++Ar++qHE+Dhl+G+l++dr+ + e
       KOO22135.1 139 CLSFPGFTADVMRSQNIQVKWQGLNGKVKRKKLRGWEARIFQHEYDHLDGTLYVDRLGEGE 199
                      ********************************************************98766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (225 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       370  (0.020637); expected 358.6 (0.02)
Passed bias filter:                      353  (0.0196888); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.23s 00:00:00.64 Elapsed: 00:00:00.39
# Mc/sec: 1710.64
//
Query:       KOO22136.1  [L=141]
Description: hypothetical protein Ctob_005501 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
  ------ inclusion threshold ------
       0.15   12.3   0.2       0.26   11.5   0.2    1.3  1  Flu_M1_C     Influenza Matrix protein (M1) C-terminal domain
       0.33    9.5   2.5       0.46    9.1   2.5    1.1  1  Aminotran_3  Aminotransferase class-III


Domain annotation for each model (and alignments):
>> Flu_M1_C  Influenza Matrix protein (M1) C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.2   2.8e-05      0.26      24      54 ..      65      95 ..      57     100 .. 0.81

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 2.8e-05
                XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
    Flu_M1_C 24 lasttakameqmagssekaeevqklaeelrq 54
                +a++taka++ mags  ka++  +   + +q
  KOO22136.1 65 TAAATAKALDWMAGSPSKAKDDVDDDGRTQQ 95
                6899***************987665555555 PP

>> Aminotran_3  Aminotransferase class-III
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.1   2.5   5.1e-05      0.46     231     269 ..       8      46 ..       4      55 .. 0.89

  Alignments for each domain:
  == domain 1  score: 9.1 bits;  conditional E-value: 5.1e-05
                  EE-TTTTTTTTSSSSGGGGCTS--SEEEE-GGGGTTSS- CS
  Aminotran_3 231 vDEvqtGfGrTGklfAlehagvspDlmtlaKaltgGlpl 269
                   D + +G+G TGk+fA +   v   +m+++  +t G+ +
   KOO22136.1   8 GDNIGVGMGETGKFFASAGTAVGDGVMATGSLVTTGFDA 46 
                  599***************999999999999999999865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (141 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       411  (0.0229238); expected 358.6 (0.02)
Passed bias filter:                      265  (0.0147805); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.36u 0.22s 00:00:00.57 Elapsed: 00:00:00.36
# Mc/sec: 1169.56
//
Query:       KOO22137.1  [L=491]
Description: hypothetical protein Ctob_005502 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    7.4e-11   42.2  19.0    2.1e-08   34.1  19.0    3.4  1  Glyco_hydro_76  Glycosyl hydrolase family 76
    0.00076   19.8   4.7    0.00076   19.8   4.7    3.0  2  Somatomedin_B   Somatomedin B domain


Domain annotation for each model (and alignments):
>> Glyco_hydro_76  Glycosyl hydrolase family 76
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.1  19.0   2.3e-12   2.1e-08      32     260 ..      76     353 ..      19     372 .. 0.72

  Alignments for each domain:
  == domain 1  score: 34.1 bits;  conditional E-value: 2.3e-12
                     S.......-GHHHHHHHHHHHHHH...HHHCTTCCCHHHHHHHHHCCCTCE.E-SSSTTCTCSSEHHHHHHHHHHHHHHHHH.....H--HHHHH CS
  Glyco_hydro_76  32 p.......yywWeagalfgalidy...wrltgdstyndlitqallaqagen.ydympanqsrtegnDDqafwglaamtaaernfpeptdepswLa 115
                     +       y wW+a ++++al  y   ++lt+ +   + i +a ++ +++  y+ +++ ++     DD a+ gla  +         t +++w +
      KOO22137.1  76 SdfgcvncYRWWSA-VALEALASYaiaSNLTPADAGGARILDAAQSTWQHApYNAFWNATEHPTWVDDFAWYGLAYTRMHD-----WTADDTWRT 164
                     04444444689987.6667776662225677777888888887777666665664444445555679****9995555544.....477778888 PP

                     HHHHHHHHHHHC.B-SCS...................CCS-BBSEC..ESS--SEEEHHHHHHHHHHHHHHHHHH.....--CHHHHHHHHHHHH CS
  Glyco_hydro_76 116 lAqavfntqasr.wdeet...................cgGGlrWqiftwnsgydyknsisngplfqlaarLaryt.....gnetYlewAekvwdW 185
                     +A ++ ++  +  wd+ +                     GG +W+    ++   +k+sis  +l++laarLa        + +++l  Ae+vw W
      KOO22137.1 165 RALELLKWGFTYgWDTAAsdaaasdaaisgvhdeassECGGFWWSL---HADSRFKDSISIVELMHLAARLASSAaagseERASLLADAERVWGW 256
                     88888888777668877777777777777777777775699***87...89999******************988888767788*********** PP

                     HHHH....SCSBTTTS-B-SEEE..................TTTCCEEEE---HHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHCEEC CS
  Glyco_hydro_76 186 vedv....gliddedwlvyDgas..................vednctdinklqwtYnqGtylsgaaylynaTgdekWldrvkgllnatlstffpd 258
                     +++     gl+   ++ +  ga+                  + + c++ + +  +Yn+G++ls+aa+lyn+T d+++l  v  llna+ + ++++
      KOO22137.1 257 LAAFeggrGLL-APNGIMSTGAQpewccsalaaattcttrtNGSLCESSGIAGESYNHGILLSSAALLYNLTADTAYLGYVASLLNAAVANMTNE 350
                     *9853222576.888888888878999999996666665544444566666678**********************************9999888 PP

                     .TT CS
  Glyco_hydro_76 259 .gn 260
                      g 
      KOO22137.1 351 lGA 353
                     444 PP

>> Somatomedin_B  Somatomedin B domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.5   0.5      0.18   1.6e+03      14      22 ..      66      74 ..      57      82 .. 0.72
   2 !   19.8   4.7   8.5e-08   0.00076       2      39 ..     388     461 ..     387     462 .. 0.84

  Alignments for each domain:
  == domain 1  score: -0.5 bits;  conditional E-value: 0.18
  Somatomedin_B 14 skkaCqCde 22
                   + ++C+C++
     KOO22137.1 66 AASECKCED 74
                   344499986 PP

  == domain 2  score: 19.8 bits;  conditional E-value: 8.5e-08
  Somatomedin_B   2 sCkgrCgekferskka.............................CqCdedCv.......eygdCCpDYeevCk 39 
                    sC+grC+ ++ ++ k                              C Cd+ C+       ++g CC+DY+  C+
     KOO22137.1 388 SCQGRCSGAKLAEAKGakaageaspdgmagvvpwtvplpipgggyCFCDAGCEnsftdnnSHGGCCADYKWRCT 461
                    8*****8887555555899*********************************733333334788********96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (491 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       476  (0.0265492); expected 358.6 (0.02)
Passed bias filter:                      219  (0.0122148); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.47u 0.23s 00:00:00.70 Elapsed: 00:00:00.38
# Mc/sec: 3911.76
//
Query:       KOO22138.1  [L=957]
Description: wd repeat-containing protein 3 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    3.6e-50  166.8  14.0    4.5e-06   27.3   0.1   10.2 10  WD40         WD domain, G-beta repeat
    2.9e-17   62.8   2.1     0.0016   18.7   0.1    8.0  9  ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain
    6.1e-15   55.5   0.9    1.6e-14   54.1   0.9    1.7  1  Utp12        Dip2/Utp12 Family
    9.5e-06   24.5   1.6       0.28    9.8   0.0    4.7  5  Nup160       Nucleoporin Nup120/160
      6e-05   22.5   0.0        1.1    8.5   0.0    3.4  3  WD40_like    WD40-like domain
    7.3e-05   21.9   0.7       0.44    9.5   0.0    4.8  5  Ge1_WD40     WD40 region of Ge1, enhancer of mRNA-decapping p
     0.0011   18.0  10.7      0.022   13.7   0.1    4.5  5  PALB2_WD40   Partner and localizer of BRCA2 WD40 domain
  ------ inclusion threshold ------
      0.037   12.6   0.0       0.19   10.3   0.0    2.0  2  ELYS-bb      beta-propeller of ELYS nucleoporin
       0.11   12.2   0.2        4.4    7.0   0.0    3.0  3  Hira         TUP1-like enhancer of split


Domain annotation for each model (and alignments):
>> WD40  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.0   6.6e-06     0.013       4      37 ..      52      88 ..      49      89 .. 0.83
   2 !   18.7   0.0   1.1e-06    0.0023       6      38 .]     101     134 ..      98     134 .. 0.93
   3 !   20.1   0.1   4.3e-07   0.00085       7      38 .]     144     176 ..     139     176 .. 0.90
   4 ?   -0.1   0.0         1     2e+03      12      37 ..     191     217 ..     180     218 .. 0.73
   5 !    8.1   0.0    0.0026       5.3       9      38 .]     389     418 ..     380     418 .. 0.88
   6 !   16.8   0.2   4.6e-06    0.0091       9      37 ..     471     500 ..     466     501 .. 0.93
   7 ?    4.0   0.0      0.05     1e+02      10      36 ..     518     547 ..     513     547 .. 0.84
   8 !   26.8   0.0   3.1e-09   6.2e-06       4      37 ..     556     590 ..     553     590 .. 0.91
   9 !   26.1   0.6   5.3e-09   1.1e-05       1      38 []     595     633 ..     595     633 .. 0.95
  10 !   27.3   0.1   2.2e-09   4.5e-06       4      38 .]     640     675 ..     637     675 .. 0.91

  Alignments for each domain:
  == domain 1  score: 16.3 bits;  conditional E-value: 6.6e-06
                EEEEESS..SS.EEEEEEETTSSEEEEEETTSEEEEE CS
        WD40  4 lrtltGH..ss.vtslafspdgawlasGsdDgtvriW 37
                +r l++   ss vt+l    dg+ +a G  Dg++r+W
  KOO22138.1 52 VRQLRAAgvSSeVTALELAADGDTVAVGYADGSIRLW 88
                667777765446****************99******* PP

  == domain 2  score: 18.7 bits;  conditional E-value: 1.1e-06
                 EEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40   6 tltGH.ssvtslafspdgawlasGsdDgtvriWd 38 
                 tl GH s v++l f++  ++l+sG +D +v +Wd
  KOO22138.1 101 TLNGHkSAVSALHFNRAATMLVSGARDTNVIVWD 134
                 789**666*************************9 PP

  == domain 3  score: 20.1 bits;  conditional E-value: 4.3e-07
                 EESSSS.EEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40   7 ltGHss.vtslafspdgawlasGsdDgtvriWd 38 
                 l+GH++ vt+++  p ++ +as s+Dg +++Wd
  KOO22138.1 144 LRGHKDaVTDVCLLPTHDAIASVSKDGLLKLWD 176
                 89**555**************99*********9 PP

  == domain 4  score: -0.1 bits;  conditional E-value: 1
                 S.EEEEEEETTSSEEEEEETTSEEEEE CS
        WD40  12 s.vtslafspdgawlasGsdDgtvriW 37 
                 +  +sla +  g  l++G+ +  v +W
  KOO22138.1 191 GeLWSLAADEAGERLLTGGANAEVLVW 217
                 2378888888889999**99*999999 PP

  == domain 5  score: 8.1 bits;  conditional E-value: 0.0026
                 SS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40   9 GH.ssvtslafspdgawlasGsdDgtvriWd 38 
                 GH s  ++la s d ++ ++++ Dg  ++W+
  KOO22138.1 389 GHrSEPRGLALSADDRLAVAAC-DGETKVWN 418
                 8988899**********99999.*******8 PP

  == domain 6  score: 16.8 bits;  conditional E-value: 4.6e-06
                 SS.SSEEEEEEETTSSEEEEEETTSEEEEE CS
        WD40   9 GH.ssvtslafspdgawlasGsdDgtvriW 37 
                 +H + v+sl+++p ++ ++sG+ D+t+ +W
  KOO22138.1 471 AHaGAVWSLCVQPGSTTILSGGADKTIAFW 500
                 79777***********************99 PP

  == domain 7  score: 4.0 bits;  conditional E-value: 0.05
                 S..SS.EEEEEEETTSSEEEEEETTSEEEE CS
        WD40  10 H..ss.vtslafspdgawlasGsdDgtvri 36 
                 H  ++ v + +f p+g+ ++++  D ++ri
  KOO22138.1 518 HelNDdVLCARFTPEGKHVVAALLDASIRI 547
                 65544599************9977999998 PP

  == domain 8  score: 26.8 bits;  conditional E-value: 3.1e-09
                 EEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEE CS
        WD40   4 lrtltGH.ssvtslafspdgawlasGsdDgtvriW 37 
                   tl GH  +v +++ s+dg +lasG  D+t++iW
  KOO22138.1 556 FLTLYGHqLPVLCVSASSDGELLASGAADKTIKIW 590
                 56899**777****************99******* PP

  == domain 9  score: 26.1 bits;  conditional E-value: 5.3e-09
                 TEEEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40   1 gqclrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 
                 g+c r+l GH  sv ++af ++ ++++s+s+D+tvr Wd
  KOO22138.1 595 GDCHRSLHGHtESVMCVAFVRETHFFFSSSKDKTVRYWD 633
                 67999*****888*************************9 PP

  == domain 10  score: 27.3 bits;  conditional E-value: 2.2e-09
                 EEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40   4 lrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 
                 +  l+GH  +v+++a s++g++++s+s+D+++r+W+
  KOO22138.1 640 ILCLKGHhADVWAMAPSRSGSFVVSASKDRSLRLWK 675
                 56799**999*************************6 PP

>> ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.7   0.1     8e-07    0.0016      29      90 ..      52     115 ..      31     117 .. 0.73
   2 ?    5.3   0.0     0.012        24      35      81 ..     103     149 ..      97     157 .. 0.82
   3 ?    4.2   0.1     0.028        55      35      81 ..     145     191 ..     126     217 .. 0.75
   4 !    9.6   0.0   0.00056       1.1      38      73 ..     220     255 ..     154     268 .. 0.85
   5 !    6.7   0.0    0.0045       8.9      35      81 ..     388     433 ..     357     441 .. 0.81
   6 ?   -0.4   0.0      0.73   1.4e+03      12      63 ..     447     498 ..     440     512 .. 0.85
   7 ?    2.0   0.0      0.13   2.6e+02      35      76 ..     518     559 ..     503     570 .. 0.77
   8 !   11.3   0.0   0.00016      0.32      37      89 ..     562     613 ..     542     616 .. 0.88
   9 ?   -2.4   0.0       3.1   6.1e+03      38      67 ..     647     676 ..     620     684 .. 0.63

  Alignments for each domain:
  == domain 1  score: 18.7 bits;  conditional E-value: 8e-07
  ANAPC4_WD40  29 vwtleedkedsevrsLaWkpdgklLavaysdgevrlldaes.gkvvhslsvksek.avtclgWg 90 
                  v +l +++ +sev++L+   dg   av+y+dg++rl + ++ +++ + ++ + +k av+ l+++
   KOO22138.1  52 VRQLRAAGVSSEVTALELAADGDTVAVGYADGSIRLWQLSDtATTAERVTLNGHKsAVSALHFN 115
                  4444778899***************************976515566666665444489999887 PP

  == domain 2  score: 5.3 bits;  conditional E-value: 0.012
  ANAPC4_WD40  35 dkedsevrsLaWkpdgklLavaysdgevrlldaesgkvvhslsvkse 81 
                  ++++s v++L+++   ++L+ +  d++v + d+  +  +  l+ +++
   KOO22138.1 103 NGHKSAVSALHFNRAATMLVSGARDTNVIVWDVIAEAGICRLRGHKD 149
                  568999************************99987776666665555 PP

  == domain 3  score: 4.2 bits;  conditional E-value: 0.028
  ANAPC4_WD40  35 dkedsevrsLaWkpdgklLavaysdgevrlldaesgkvvhslsvkse 81 
                   +++  v++++  p    +a + +dg ++l d  ++++++++ + s 
   KOO22138.1 145 RGHKDAVTDVCLLPTHDAIASVSKDGLLKLWDLPTQHCIQTVAAPSG 191
                  56677888888888888888888888888888888888888766554 PP

  == domain 4  score: 9.6 bits;  conditional E-value: 0.00056
  ANAPC4_WD40  38 dsevrsLaWkpdgklLavaysdgevrlldaesgkvv 73 
                  + +v  L++  d++ Lav ++d +++l++++s+  +
   KOO22138.1 220 EARVARLRFGLDDRALAVQFADRNLQLFSVQSAAQL 255
                  67899*************************998765 PP

  == domain 5  score: 6.7 bits;  conditional E-value: 0.0045
  ANAPC4_WD40  35 dkedsevrsLaWkpdgklLavaysdgevrlldaesgkvvhslsvkse 81 
                  +++ se r+La + d++ Lava  dge ++ +++s+++v sl ++  
   KOO22138.1 388 AGHRSEPRGLALSADDR-LAVAACDGETKVWNVKSQQCVGSLACGYG 433
                  56666777888888776.899999***************99998765 PP

  == domain 6  score: -0.4 bits;  conditional E-value: 0.73
  ANAPC4_WD40  12 latedgellvfRlngqrvwtleedkedsevrsLaWkpdgklLavaysdgevr 63 
                  ++t+ g+l++f l  + +++  +d++ + v sL+ +p  + +  + +d ++ 
   KOO22138.1 447 VGTKAGSLQAFSLATNDLVDERADAHAGAVWSLCVQPGSTTILSGGADKTIA 498
                  5688888888999999999888999999999999999999999988888876 PP

  == domain 7  score: 2.0 bits;  conditional E-value: 0.13
  ANAPC4_WD40  35 dkedsevrsLaWkpdgklLavaysdgevrlldaesgkvvhsl 76 
                  ++ +  v + ++ p+gk  + a  d ++r+l   s k+  +l
   KOO22138.1 518 HELNDDVLCARFTPEGKHVVAALLDASIRILFTDSLKLFLTL 559
                  56677888999*******************988887776666 PP

  == domain 8  score: 11.3 bits;  conditional E-value: 0.00016
  ANAPC4_WD40  37 edsevrsLaWkpdgklLavaysdgevrlldaesgkvvhslsvksekavtclgW 89 
                  ++  v +++ + dg+lLa + +d ++++     g++ +sl+ ++e +v+c+ +
   KOO22138.1 562 HQLPVLCVSASSDGELLASGAADKTIKIWGLDFGDCHRSLHGHTE-SVMCVAF 613
                  67788899999*****************************99988.5***987 PP

  == domain 9  score: -2.4 bits;  conditional E-value: 3.1
  ANAPC4_WD40  38 dsevrsLaWkpdgklLavaysdgevrllda 67 
                     v ++a + +g++ + a +d ++rl + 
   KOO22138.1 647 HADVWAMAPSRSGSFVVSASKDRSLRLWKR 676
                  444555555566666666666666666655 PP

>> Utp12  Dip2/Utp12 Family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.1   0.9     8e-18   1.6e-14       4     106 ..     794     893 ..     791     894 .. 0.95

  Alignments for each domain:
  == domain 1  score: 54.1 bits;  conditional E-value: 8e-18
                 HHHH.HHHSS-TTTHHHHHHCS-CTCHHHHHHHHHHHH.HTTTTHHHHHHHHHHHHHHHHHHHHHSH.HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
       Utp12   4 elleevlekippsdirltvlrLpssyvlkLLeflaerlaeksphlelllrwlkallrvHgsylvaspsdlvpaLrslqkslrerlktlskllglnlgrL 102
                 +ll+  l++++++++++++l Lp+  +  LL+ l  ++  + p +el+ +++ +llrvH++++v+s + l ++L++l +slr+rl++   ++g+nl+++
  KOO22138.1 794 YLLK-ALSSVRATELEQALLLLPFDAAKALLTRLLPLV-PRAPPVELMAKVILFLLRVHHKQIVGSAG-LLTMLNALDTSLRSRLAQEHGVIGYNLAAM 889
                 6777.9******************************55.****************************8.99**************************** PP

                 HHHH CS
       Utp12 103 dyll 106
                 +y++
  KOO22138.1 890 RYMR 893
                 **86 PP

>> Nup160  Nucleoporin Nup120/160
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.5   0.1     0.011        23     220     283 ..      63     123 ..      44     132 .. 0.76
   2 !    9.8   0.0   0.00014      0.28     229     256 ..     159     186 ..     147     208 .. 0.84
   3 !    4.4   0.0    0.0061        12     231     254 ..     403     426 ..     390     431 .. 0.85
   4 ?   -0.1   0.0      0.14   2.8e+02     221     248 ..     609     635 ..     596     643 .. 0.83
   5 ?   -0.1   0.0      0.14   2.8e+02     230     270 ..     659     712 ..     646     725 .. 0.71

  Alignments for each domain:
  == domain 1  score: 3.5 bits;  conditional E-value: 0.011
                 EEET..........TTTEEEEEETT-EEEEEETTTTEEEEE.EE--.-SSSTTS--SSEESEEESSSSEE CS
      Nup160 220 dvavavvei.....gqtylfalsrdgkLrvWnlltgkclat.idllrdeeaqdessskstldpaesslir 283
                  v+     +     + +++++ + dg +r+W l++  ++a   +l+      ++ +s+++ ++a + l++
  KOO22138.1  63 EVT-----AlelaaDGDTVAVGYADGSIRLWQLSDTATTAErVTLN----GHKSAVSALHFNRAATMLVS 123
                 333.....3344458999***************9999999967777....88888888888888887776 PP

  == domain 2  score: 9.8 bits;  conditional E-value: 0.00014
                 TTTEEEEEETT-EEEEEETTTTEEEEEE CS
      Nup160 229 gqtylfalsrdgkLrvWnlltgkclati 256
                 + + ++++s dg L++W+l t+ c+ t 
  KOO22138.1 159 THDAIASVSKDGLLKLWDLPTQHCIQTV 186
                 6789*********************984 PP

  == domain 3  score: 4.4 bits;  conditional E-value: 0.0061
                 TEEEEEETT-EEEEEETTTTEEEE CS
      Nup160 231 tylfalsrdgkLrvWnlltgkcla 254
                 + l+++  dg+ +vWn+++++c+ 
  KOO22138.1 403 DRLAVAACDGETKVWNVKSQQCVG 426
                 55778888**************96 PP

  == domain 4  score: -0.1 bits;  conditional E-value: 0.14
                 EET.....TTTEEEEEETT-EEEEEETT CS
      Nup160 221 vavavveigqtylfalsrdgkLrvWnll 248
                 + va+v+ +  + f+ s d+++r W+ +
  KOO22138.1 609 MCVAFVR-ETHFFFSSSKDKTVRYWDAD 635
                 5677888.999**************976 PP

  == domain 5  score: -0.1 bits;  conditional E-value: 0.14
                 TTEEEEEETT-EEEEEETTTTEEEEEEE--..............-SSSTTS--S CS
      Nup160 230 qtylfalsrdgkLrvWnlltgkclatidll.............rdeeaqdesss 270
                  ++++++s d+ Lr+W  ++ ++    +               r+e+a+ e+++
  KOO22138.1 659 GSFVVSASKDRSLRLWKRSDEQVFLEEEREaaleelfeaglekRQEYAEAEEEE 712
                 5799************88888877765555556777777777766555555544 PP

>> WD40_like  WD40-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.6   0.0    0.0021       4.2       4      79 ..     110     186 ..     107     260 .. 0.84
   2 ?    3.1   0.0     0.025        51      53     109 ..     402     459 ..     398     472 .. 0.84
   3 !    8.5   0.0   0.00057       1.1       5      59 ..     568     622 ..     565     636 .. 0.89

  Alignments for each domain:
  == domain 1  score: 6.6 bits;  conditional E-value: 0.0021
   WD40_like   4 YsidiskkgslilyGgkddkctvlkleslesvsivesfedSvifvkllddd.lilvvtlDGtillslleneeevene 79 
                  ++ +++ +++++ G++d ++ v ++  +  +  + + +d v  v ll  +  i  v+ DG + l +l  ++ +++ 
  KOO22138.1 110 SALHFNRAATMLVSGARDTNVIVWDVIAEAGICRLRGHKDAVTDVCLLPTHdAIASVSKDGLLKLWDLPTQHCIQTV 186
                 57889999***********************************9999977648999*******99999999887765 PP

  == domain 2  score: 3.1 bits;  conditional E-value: 0.025
   WD40_like  53 ddlilvvtlDGtillslleneeevenekieedistvkviddk.lliGtnkGsiyvfsk 109
                 dd + v++ DG      ++ ++ v +      +s + v+  k +++Gt+ Gs+  fs 
  KOO22138.1 402 DDRLAVAACDGETKVWNVKSQQCVGSLACGYGLSAAFVLASKyVIVGTKAGSLQAFSL 459
                 7788899999999999999999999999999999998876553789******999986 PP

  == domain 3  score: 8.5 bits;  conditional E-value: 0.00057
   WD40_like   5 sidiskkgslilyGgkddkctvlkleslesvsivesfedSvifvklldddlilvv 59 
                  +  s +g+l++ G+ d+++++  l+ ++   ++++ ++Sv+ v ++ + ++   
  KOO22138.1 568 CVSASSDGELLASGAADKTIKIWGLDFGDCHRSLHGHTESVMCVAFVRETHFFFS 622
                 678899*****************************************99987654 PP

>> Ge1_WD40  WD40 region of Ge1, enhancer of mRNA-decapping protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.5   0.0   0.00022      0.44     188     223 ..      62      97 ..      41     114 .. 0.83
   2 ?    3.1   0.0      0.02        39     177     216 ..     137     177 ..     117     186 .. 0.83
   3 ?   -0.1   0.0      0.18   3.6e+02     195     217 ..     399     420 ..     389     430 .. 0.71
   4 ?   -2.7   0.0       1.1   2.2e+03     189     213 ..     523     547 ..     506     551 .. 0.80
   5 ?    2.0   0.0      0.04        79     181     220 ..     556     596 ..     543     626 .. 0.80

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 0.00022
    Ge1_WD40 188 sliveaafspdGtalatasedGevkffqvyledeee 223
                 s+++   +++dG ++a+  +dG ++++q+  + ++ 
  KOO22138.1  62 SEVTALELAADGDTVAVGYADGSIRLWQLSDTATTA 97 
                 5788889*********************97665555 PP

  == domain 2  score: 3.1 bits;  conditional E-value: 0.02
    Ge1_WD40 177 ieegllkieehs.liveaafspdGtalatasedGevkffqv 216
                 +e g+ +++ h   +++  + p   a+a  s+dG++k++ +
  KOO22138.1 137 AEAGICRLRGHKdAVTDVCLLPTHDAIASVSKDGLLKLWDL 177
                 45688999999768999999999999999999999999975 PP

  == domain 3  score: -0.1 bits;  conditional E-value: 0.18
    Ge1_WD40 195 fspdGtalatasedGevkffqvy 217
                 +s+d   la+a+ dGe k + v 
  KOO22138.1 399 LSADD-RLAVAACDGETKVWNVK 420
                 55554.47777778888777765 PP

  == domain 4  score: -2.7 bits;  conditional E-value: 1.1
    Ge1_WD40 189 liveaafspdGtalatasedGevkf 213
                  + +a f+p+G  + +a  d  ++ 
  KOO22138.1 523 DVLCARFTPEGKHVVAALLDASIRI 547
                 4899*************99999885 PP

  == domain 5  score: 2.0 bits;  conditional E-value: 0.04
    Ge1_WD40 181 llkieehs.liveaafspdGtalatasedGevkffqvyled 220
                 +l ++ h   + + + s+dG  la  ++d ++k + + + d
  KOO22138.1 556 FLTLYGHQlPVLCVSASSDGELLASGAADKTIKIWGLDFGD 596
                 5666667646889999*****************99876544 PP

>> PALB2_WD40  Partner and localizer of BRCA2 WD40 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.5   0.0    0.0069        14     199     217 ..      38      56 ..      30      70 .. 0.83
   2 ?    3.4   0.3     0.015        29     293     350 ..      74     133 ..      65     134 .. 0.79
   3 !   13.7   0.1   1.1e-05     0.022     294     350 ..     162     217 ..     158     218 .. 0.89
   4 ?   -2.1   0.1      0.73   1.4e+03     300     329 ..     410     439 ..     399     456 .. 0.57
   5 ?   -1.8   0.0      0.56   1.1e+03     302     325 ..     585     608 ..     570     625 .. 0.71

  Alignments for each domain:
  == domain 1  score: 4.5 bits;  conditional E-value: 0.0069
  PALB2_WD40 199 lnniviWnlktGqllkkie 217
                 l+ + iWn+ktG l+++++
  KOO22138.1  38 LEAVAIWNIKTGALVRQLR 56 
                 67899*********99986 PP

  == domain 2  score: 3.4 bits;  conditional E-value: 0.015
  PALB2_WD40 293 qlaaavltsGaiavWdlllghctalllpesd..esWslvrWsgtdsqllaGqkdGsvlvy 350
                 +++a   + G+i +W+l  +  ta  ++  +  +  s +++  + ++l++G +d +v+v+
  KOO22138.1  74 DTVAVGYADGSIRLWQLSDTATTAERVTLNGhkSAVSALHFNRAATMLVSGARDTNVIVW 133
                 5666677899*******99999998777655114567889999999999*****999986 PP

  == domain 3  score: 13.7 bits;  conditional E-value: 1.1e-05
  PALB2_WD40 294 laaavltsGaiavWdlllghctalllpesdesWslvrWsgtdsqllaGqkdGsvlvy 350
                 ++a+v   G + +Wdl+  hc   +++ s+e Wsl    ++  +ll+G ++ +vlv+
  KOO22138.1 162 AIASVSKDGLLKLWDLPTQHCIQTVAAPSGELWSLAA-DEAGERLLTGGANAEVLVW 217
                 57889999***************************86.567889*********9997 PP

  == domain 4  score: -2.1 bits;  conditional E-value: 0.73
  PALB2_WD40 300 tsGaiavWdlllghctalllpesdesWslv 329
                   G   vW++   +c   l+   + s ++v
  KOO22138.1 410 CDGETKVWNVKSQQCVGSLACGYGLSAAFV 439
                 345555566655555555555555554444 PP

  == domain 5  score: -1.8 bits;  conditional E-value: 0.56
  PALB2_WD40 302 GaiavWdlllghctalllpesdes 325
                  +i +W l +g c   l  ++++ 
  KOO22138.1 585 KTIKIWGLDFGDCHRSLHGHTESV 608
                 479999999999999998776654 PP

>> ELYS-bb  beta-propeller of ELYS nucleoporin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.0   9.4e-05      0.19     213     273 ..      53     115 ..      33     120 .. 0.81
   2 ?   -1.6   0.0      0.39   7.8e+02     232     251 ..     402     421 ..     397     424 .. 0.86

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 9.4e-05
     ELYS-bb 213 lqlasps.gvavsalsyisrtnqlavgfsdgylslwnlk.tlkkeyhsqleggrvpvyavifq 273
                  ql++      v+al   +  + +avg++dg ++lw+l  t      + l+g +  v a+ f+
  KOO22138.1  53 RQLRAAGvSSEVTALELAADGDTVAVGYADGSIRLWQLSdTATTAERVTLNGHKSAVSALHFN 115
                 5665543256799************************96256677789999999999999886 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 0.39
     ELYS-bb 232 tnqlavgfsdgylslwnlkt 251
                  ++lav   dg  ++wn+k+
  KOO22138.1 402 DDRLAVAACDGETKVWNVKS 421
                 679***************98 PP

>> Hira  TUP1-like enhancer of split
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.0       1.6   3.2e+03      22      52 ..      74     104 ..      62     138 .. 0.55
   2 ?    1.3   0.0      0.12   2.3e+02      24      44 ..     163     183 ..     154     189 .. 0.85
   3 ?    7.0   0.0    0.0022       4.4      21      44 ..     402     425 ..     390     444 .. 0.86

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 1.6
        Hira  22 syLlavtsvgllyvWnvkkkkvllppvslap 52 
                 + +++  ++g++  W++   +++ ++v+l+ 
  KOO22138.1  74 DTVAVGYADGSIRLWQLSDTATTAERVTLNG 104
                 5555555666666666655555555554443 PP

  == domain 2  score: 1.3 bits;  conditional E-value: 0.12
        Hira  24 LlavtsvgllyvWnvkkkkvl 44 
                 ++ v+++gll  W++ +++++
  KOO22138.1 163 IASVSKDGLLKLWDLPTQHCI 183
                 567999************996 PP

  == domain 3  score: 7.0 bits;  conditional E-value: 0.0022
        Hira  21 gsyLlavtsvgllyvWnvkkkkvl 44 
                 ++ L++  ++g+  vWnvk+++++
  KOO22138.1 402 DDRLAVAACDGETKVWNVKSQQCV 425
                 48999****************997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (957 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       772  (0.0430587); expected 358.6 (0.02)
Passed bias filter:                      419  (0.02337); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.78u 0.30s 00:00:01.08 Elapsed: 00:00:00.46
# Mc/sec: 6218.28
//
Query:       KOO22139.1  [L=707]
Description: hypothetical protein Ctob_000699 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
     0.0032   17.2   0.0        0.6    9.8   0.0    2.2  2  Tub       Tub family
  ------ inclusion threshold ------
      0.027   14.4   0.1      0.074   13.0   0.1    1.8  1  KOW       KOW motif
      0.028   14.7   0.0      0.057   13.7   0.0    1.4  1  DUF3912   Protein of unknown function (DUF3912)


Domain annotation for each model (and alignments):
>> Tub  Tub family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.1   0.0    0.0027        16      48     166 ..     356     472 ..     342     476 .. 0.75
   2 !    9.8   0.0    0.0001       0.6     219     239 ..     505     525 ..     498     527 .. 0.87

  Alignments for each domain:
  == domain 1  score: 5.1 bits;  conditional E-value: 0.0027
         Tub  48 ttseYlisldaedl.srdsesyiGklrs.nflgtkftlydkgvspkksaakesakvkkekvrkelaavvYelnvlgt.rgprkmkvlipsie...kkve 140
                 ++++Y++ +d++ l ++ s     +++s    g+ f l+dk +  ++        +k++k r+el+  +Y++ + +  + p  ++ +ip ++   ++ +
  KOO22139.1 356 QKCDYALHIDPAFLaKEPSPPWFCQVKSiSSKGMAFALFDKSD-DAYG-------RKTGKPRRELGILSYSYPKDEVvQFPLPLQLVIPLVHedgSAEQ 446
                 56677777777766344456677788887888999****9992.2222.......4568889*********777666689***********76666677 PP

         Tub 141 vspedeeeslqeetkkeeesdllvlk 166
                 + p+  e+s+++++++ ++s+ll+l+
  KOO22139.1 447 FVPDAPERSMAAAYQSGNRSKLLTLN 472
                 88888889999999999999999885 PP

  == domain 2  score: 9.8 bits;  conditional E-value: 0.0001
         Tub 219 tmDyryPlsalqAFaiclssf 239
                  + yr+Pls+ qA a++ls +
  KOO22139.1 505 RIRYRHPLSPCQACAVALSIL 525
                 577***************976 PP

>> KOW  KOW motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.1   1.2e-05     0.074       2      20 ..     227     245 ..     226     258 .. 0.91

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 1.2e-05
                 TSEEEESSSTTTTCEEEEE CS
         KOW   2 GdhVkVvsGphkGktGkVv 20 
                 G+ V+ ++Gph Gk+G+V 
  KOO22139.1 227 GKQVQLIDGPHLGKVGTVR 245
                 99***************95 PP

>> DUF3912  Protein of unknown function (DUF3912)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.0   9.6e-06     0.057       5      41 ..     225     260 ..     221     264 .. 0.89

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 9.6e-06
     DUF3912   5 ilGqkvyvkdGPyrnklGvvkkkeqedddhftvvidd 41 
                 ++G++v + dGP+ +k+G v+   +e+d+ + v ++ 
  KOO22139.1 225 LIGKQVQLIDGPHLGKVGTVRD-YKEADSTYEVAVGA 260
                 57999999*************9.8999*****99875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (707 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       481  (0.026828); expected 358.6 (0.02)
Passed bias filter:                      378  (0.0210832); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.59u 0.30s 00:00:00.88 Elapsed: 00:00:00.45
# Mc/sec: 4680.62
//
Query:       KOO22140.1  [L=379]
Description: conserved unknown protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.3e-16   60.6   0.0    4.8e-16   59.6   0.0    1.5  1  NYN       NYN domain


Domain annotation for each model (and alignments):
>> NYN  NYN domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.6   0.0   2.7e-20   4.8e-16       3     128 ..       1     161 [.       1     174 [. 0.79

  Alignments for each domain:
  == domain 1  score: 59.6 bits;  conditional E-value: 2.7e-20
         NYN   3 avfiDgenlpvpak.................gke..vdyrklleeirs..............kgelvraraygn.wedee....qnkfqdalsstgikv 63 
                 ++fiDg+ l+++                   +    +d+++l + i++                e+vr  a+++ ++d++     +++ + ++++ ++v
  KOO22140.1   1 MIFIDGSWLYYSLHgrrpncpvtrkygegweY-ShsIDFDRLPQLIAQrlhkemlerfktqrFVEVVRSVAFASmRADTDvqspRKRLFKGMEKANYDV 98 
                 68888888888777888888888889997752.2569*********99**99**999997665559999999998555442111244444457777877 PP

         NYN  64 khkplkkrggsgkkavDvelavdalelaydnky.dtivLvsgDgDFaplveklrergkrVevllae 128
                 +     + +g ++k +D++lav+++ +a  +   d +vLvsgD+DF p+++++r +gkrV +++++
  KOO22140.1  99 HLS---TTVGHQEKCIDIALAVEMMHYASLPGAyDVAVLVSGDKDFMPALSRIRTKGKRVAICSMR 161
                 554...4457899***************988778**************************999854 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (379 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       427  (0.0238162); expected 358.6 (0.02)
Passed bias filter:                      387  (0.0215851); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.24s 00:00:00.72 Elapsed: 00:00:00.41
# Mc/sec: 2785.55
//
Query:       KOO22141.1  [L=913]
Description: hypothetical protein Ctob_000697 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.5e-11   44.2   0.0    2.6e-11   43.4   0.0    1.3  1  Pkinase         Protein kinase domain
    1.8e-07   30.7   0.0    4.5e-07   29.4   0.0    1.5  2  Pkinase_Tyr     Protein tyrosine kinase
     0.0012   17.7   0.0     0.0023   16.8   0.0    1.4  2  Pkinase_fungal  Fungal protein kinase


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.4   0.0   4.3e-15   2.6e-11      26     172 ..     509     668 ..     501     680 .. 0.81

  Alignments for each domain:
  == domain 1  score: 43.4 bits;  conditional E-value: 4.3e-15
                 EEEEEEEECHCHCHHHHHHHHHHHHHHHHHS...CTTB--EEEEEEESSEEEEEEE--TTEBHHHHHHHHSS--HHHHHHHHHHHHHHHHHHH.HTTEE CS
     Pkinase  26 ivAvKkikkekakkkkekkvlrEikilkklk...hpnivrlyevfeekdelylvleyveggeladllerkgslseeeakkiakqilegleylH.skgii 120
                  vA+K++ k +   +  +++  E +il++ +    p+++ l+++     + +l+l ++  g+++d+l+ +++ ++  a+  +  ++++le lH   ++ 
  KOO22141.1 509 NVALKRLVKTSPPGTA-RRLEWEAAILARASragTPHVLPLLGWDA--PRAHLFLPLCGAGSVTDALRSRSADADLLARCALLGLCRALEQLHgPLRVA 604
                 5888888888777665.58999999999988888999999999866..56667799***********9888888889999*************8889** PP

                 -SS-SGGGEEEETTTE.........EEE-SGTTSEESSSSCS...BCTTTSCGGGS-HHHHTTS CS
     Pkinase 121 HrDlKpeNiLidekge.........lKitDFGlakelesssk...ltsfvgtseYlAPEvlken 172
                 HrD+K +N+L+ + ++         + +tDFG++  +  + +   + +  +t  + APEvl+++
  KOO22141.1 605 HRDVKLDNLLLMRPAKaatgfgpddVVLTDFGFSLAAGINDNtsaAADLPATLPFTAPEVLERR 668
                 ************7444466777788*******976655444444799999***********443 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.4   0.0   7.5e-11   4.5e-07      23     180 ..     502     668 ..     485     674 .. 0.84
   2 ?   -3.5   0.0      0.81   4.9e+03     234     256 ..     882     904 ..     879     906 .. 0.84

  Alignments for each domain:
  == domain 1  score: 29.4 bits;  conditional E-value: 7.5e-11
                  TTTSSEEEEEEEEESTTSSHHHHHHHHHHHHHHHTS...-BTTB--EEEEEESSSSEEEEEE--TTEBHHHHHHHTCTTTSBHHHHHHHHHHHHHHHH CS
  Pkinase_Tyr  23 ekekkevkVavKtlkeeateeekeelleeakimkkl...khpnivkllgvctkeepllivteyvkgGdLlkfLrkkekekltlkdllsfalqvAkGme 117
                   +  + ++Va+K l +++   + ++l  ea+i+ +      p+++ llg+   +    + + ++  G++ + Lr++ ++  +l   +   l +++++e
   KOO22141.1 502 ARAAAPLNVALKRLVKTSPPGTARRLEWEAAILARAsraGTPHVLPLLGWDAPR--AHLFLPLCGAGSVTDALRSR-SADADLLARC-ALLGLCRALE 595
                  36677899******999999999**********9874234799******98854..56889**************9.5555555544.4579****** PP

                  HHHHT.TEEEST-SGGGEEEEE.........TTEEEE-STTTHEETTTSSEEEETTSSTSGGGGS-HHHHHHS CS
  Pkinase_Tyr 118 yLesk.klvHrdlaarNvLlse.........nkvvkisDfGLardiekddeyvkkeeaklpvkWmapEslkek 180
                   L+   ++ Hrd+   N Ll +          + v ++DfG + +   +d+++++ +    + ++apE+l+++
   KOO22141.1 596 QLHGPlRVAHRDVKLDNLLLMRpakaatgfgPDDVVLTDFGFSLAAGINDNTSAAADLPATLPFTAPEVLERR 668
                  **9852799************9999***99988999*****999999999999****************9976 PP

  == domain 2  score: -3.5 bits;  conditional E-value: 0.81
                  HHHHHHHHT-SSGGGS--HHHHH CS
  Pkinase_Tyr 234 lyelmkkcweedpeeRptfselv 256
                  + e++ + w+++ ++Rp++ + v
   KOO22141.1 882 VREVLGDAWNATGASRPSMGRFV 904
                  5688999***********98766 PP

>> Pkinase_fungal  Fungal protein kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   0.0   3.9e-07    0.0023     310     388 ..     585     667 ..     567     683 .. 0.87
   2 ?   -4.0   0.0      0.79   4.7e+03     281     299 ..     757     788 ..     706     790 .. 0.61

  Alignments for each domain:
  == domain 1  score: 16.8 bits;  conditional E-value: 3.9e-07
  Pkinase_fungal 310 ealrDaIkghrsLflkagiLHrDiSenNilitdskke....gerkglLiDLDlakelsddssesgarertGTleFmaievlkg 388
                     +al    +++++L+   ++ HrD+  +N+l++ ++k     g +  +L D+ +    + ++++s+a +   Tl+F a evl+ 
      KOO22141.1 585 CALLGLCRALEQLHGPLRVAHRDVKLDNLLLMRPAKAatgfGPDDVVLTDFGFSLAAGINDNTSAAADLPATLPFTAPEVLER 667
                     68889999************************99776699999999*****999999999999999**************984 PP

  == domain 2  score: -4.0 bits;  conditional E-value: 0.79
  Pkinase_fungal 281 r.............lenrvhrrlvispvGkpi 299
                     +              + r +rrlv  p +++i
      KOO22141.1 757 ElkqlqnapidaleRARRACRRLVAGPQAETI 788
                     03333333344444567899999988888777 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (913 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       680  (0.0379274); expected 358.6 (0.02)
Passed bias filter:                      375  (0.0209158); expected 358.6 (0.02)
Passed Vit filter:                        48  (0.00267723); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.72u 0.27s 00:00:00.99 Elapsed: 00:00:00.44
# Mc/sec: 6170.20
//
Query:       KOO22142.1  [L=191]
Description: hypothetical protein Ctob_000696 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (191 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       627  (0.0349713); expected 358.6 (0.02)
Passed bias filter:                      337  (0.0187964); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.27s 00:00:00.64 Elapsed: 00:00:00.40
# Mc/sec: 1448.66
//
Query:       KOO22143.1  [L=436]
Description: hypothetical protein Ctob_000695 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      8e-10   37.6  11.0       0.03   14.1   0.5    4.6  4  IQ        IQ calmodulin-binding motif
    1.4e-06   28.6   5.9    0.00066   20.0   0.1    2.5  2  HEAT_2    HEAT repeats
    6.7e-05   22.8   3.2    0.00078   19.4   0.4    2.6  2  Arm       Armadillo/beta-catenin-like repeat
     0.0002   21.8   1.1    0.00098   19.6   0.3    2.6  2  HEAT_EZ   HEAT-like repeat
     0.0043   17.2   0.1       0.02   15.1   0.1    2.3  1  HEAT      HEAT repeat
  ------ inclusion threshold ------
       0.02   14.0   0.8       0.04   13.0   0.8    1.5  1  IFRD      Interferon-related developmental regulator (IFRD)


Domain annotation for each model (and alignments):
>> IQ  IQ calmodulin-binding motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.4   0.1     0.029        86       2      13 ..     230     241 ..     229     245 .. 0.88
   2 !   14.1   0.5   9.9e-06      0.03       1      18 [.     256     273 ..     256     275 .. 0.91
   3 !   13.0   0.1   2.2e-05     0.067       3      19 ..     285     301 ..     283     303 .. 0.92
   4 !   11.6   0.1   6.2e-05      0.19       2      17 ..     309     324 ..     308     324 .. 0.96

  Alignments for each domain:
  == domain 1  score: 3.4 bits;  conditional E-value: 0.029
                 HHHHHHHHHHHH CS
          IQ   2 kaaikIQaawRG 13 
                 +a + IQa++R 
  KOO22143.1 230 EATVAIQARVRS 241
                 5899******96 PP

  == domain 2  score: 14.1 bits;  conditional E-value: 9.9e-06
                 HHHHHHHHHHHHHHHHHH CS
          IQ   1 rkaaikIQaawRGylaRk 18 
                 r+aa++ Qa +RG+ aR 
  KOO22143.1 256 RAAATIVQASYRGHGARS 273
                 68**************97 PP

  == domain 3  score: 13.0 bits;  conditional E-value: 2.2e-05
                 HHHHHHHHHHHHHHHHH CS
          IQ   3 aaikIQaawRGylaRkr 19 
                 aa ++Q+++RG ++Rk+
  KOO22143.1 285 AAALLQSVIRGRKQRKK 301
                 899*************7 PP

  == domain 4  score: 11.6 bits;  conditional E-value: 6.2e-05
                 HHHHHHHHHHHHHHHH CS
          IQ   2 kaaikIQaawRGylaR 17 
                 kaa+k Qa  RG +aR
  KOO22143.1 309 KAATKVQAMTRGRKAR 324
                 8**************9 PP

>> HEAT_2  HEAT repeats
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.1   2.1   8.8e-07    0.0026       3      87 ..      51     153 ..      49     154 .. 0.68
   2 !   20.0   0.1   2.2e-07   0.00066       2      63 ..      92     161 ..      90     196 .. 0.78

  Alignments for each domain:
  == domain 1  score: 18.1 bits;  conditional E-value: 8.8e-07
      HEAT_2   3 aLlqalendpdpevrraairaLgrignp...........ealpaLvell.ededpavRraaaeaLgaig........dpealpaLkellddddddvvRe 81 
                  L qal     p+ ++aa+ +L+ ++             ++ p L ++l + +dp+++  a   L+ ++         ++a+paL++l  + ++++v+ 
  KOO22143.1  51 ELGQAL-AAGQPAKAKAACSELAMLAAAsisacqavveaKIEPQLSKVLlKEKDPMTQCWAMSVLSNCAinkasrerQQAAIPALCKLIMS-PNPEVQH 147
                 678888.788888888888888844444344444555557799999966699999999999999986633344333357799999997755.5566688 PP

      HEAT_2  82 aAaeaL 87 
                 aAa  L
  KOO22143.1 148 AAALHL 153
                 887765 PP

  == domain 2  score: 20.0 bits;  conditional E-value: 2.2e-07
      HEAT_2   2 daLlqalendpdpevrraairaLg........rignpealpaLvellededpavRraaaeaLgaigdpea 63 
                 ++L ++l + +dp ++  a  +L         r + + a+paL +l+ +++p+v++aaa  L+ + ++++
  KOO22143.1  92 PQLSKVLLKEKDPMTQCWAMSVLSncainkasRERQQAAIPALCKLIMSPNPEVQHAAALHLALLSRSSS 161
                 67889999****************666654322233488********************99987655443 PP

>> Arm  Armadillo/beta-catenin-like repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.3   0.1     0.031        94       6      40 ..      83     118 ..      80     119 .. 0.86
   2 !   19.4   0.4   2.6e-07   0.00078      13      40 ..     130     157 ..     127     158 .. 0.90

  Alignments for each domain:
  == domain 1  score: 3.3 bits;  conditional E-value: 0.031
                 HHHHHTTHHHHHHHHTT.TSSHHHHHHHHHHHHHHT CS
         Arm   6 davieaGavppLvrLLs.sedeevqeeAawALsNLa 40 
                 +av+ea + p+L + L   +d+++q+ A + LsN a
  KOO22143.1  83 QAVVEAKIEPQLSKVLLkEKDPMTQCWAMSVLSNCA 118
                 889999999999999999*******98888888876 PP

  == domain 2  score: 19.4 bits;  conditional E-value: 2.6e-07
                 HHHHHHHHTTTSSHHHHHHHHHHHHHHT CS
         Arm  13 avppLvrLLssedeevqeeAawALsNLa 40 
                 a+p+L++L+ s+++evq++Aa  L+ L+
  KOO22143.1 130 AIPALCKLIMSPNPEVQHAAALHLALLS 157
                 8********************9888776 PP

>> HEAT_EZ  HEAT-like repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.0      0.82   2.4e+03      28      53 ..      89     115 ..      71     117 .. 0.52
   2 !   19.6   0.3   3.3e-07   0.00098      25      53 ..     126     154 ..     108     156 .. 0.79

  Alignments for each domain:
  == domain 1  score: -0.9 bits;  conditional E-value: 0.82
     HEAT_EZ  28 eilpaLl.alLnddsdeVRaaAagaLg 53 
                 +i p+L   lL+ +++++++ A   L+
  KOO22143.1  89 KIEPQLSkVLLKEKDPMTQCWAMSVLS 115
                 344444422334445566766666655 PP

  == domain 2  score: 19.6 bits;  conditional E-value: 3.3e-07
     HEAT_EZ  25 lvpeilpaLlalLnddsdeVRaaAagaLg 53 
                  +++++paL++l +++++eV+ aAa +L+
  KOO22143.1 126 RQQAAIPALCKLIMSPNPEVQHAAALHLA 154
                 5679**********************997 PP

>> HEAT  HEAT repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.1   6.8e-06      0.02       2      28 ..     131     157 ..     130     160 .. 0.90

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 6.8e-06
                 HHHHHHHHT-SSHHHHHHHHHHHHHHH CS
        HEAT   2 lPlllkllsDpspeVReaAakaLgala 28 
                 +P+l+kl+++p+peV  aAa+ L+ l+
  KOO22143.1 131 IPALCKLIMSPNPEVQHAAALHLALLS 157
                 8*******************9998775 PP

>> IFRD  Interferon-related developmental regulator (IFRD)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.8   1.3e-05      0.04     203     253 ..     113     160 ..      53     191 .. 0.79

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 1.3e-05
        IFRD 203 LltllpssklnkkleedleealealvelLdssdvevriAAGeaiALlfEls 253
                 +l   ++  +nk  +e+ ++a++al +l+ s++ ev+ AA   +ALl   s
  KOO22143.1 113 VL---SNCAINKASRERQQAAIPALCKLIMSPNPEVQHAAALHLALLSRSS 160
                 34...555777777777789**************************97655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (436 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       617  (0.0344135); expected 358.6 (0.02)
Passed bias filter:                      317  (0.0176809); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.51u 0.25s 00:00:00.76 Elapsed: 00:00:00.42
# Mc/sec: 3153.33
//
Query:       KOO22144.1  [L=723]
Description: hypothetical protein Ctob_000693 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (723 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2196  (0.122483); expected 358.6 (0.02)
Passed bias filter:                      391  (0.0218082); expected 358.6 (0.02)
Passed Vit filter:                        78  (0.00435049); expected 17.9 (0.001)
Passed Fwd filter:                        24  (0.00133861); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 1.28u 0.35s 00:00:01.63 Elapsed: 00:00:00.56
# Mc/sec: 3897.67
//
Query:       KOO22145.1  [L=480]
Description: serine carboxypeptidase-like 20-like protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.6e-81  274.2   0.0      3e-81  274.0   0.0    1.0  1  Peptidase_S10  Serine carboxypeptidase


Domain annotation for each model (and alignments):
>> Peptidase_S10  Serine carboxypeptidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  274.0   0.0   1.7e-85     3e-81      11     419 .]       1     466 [.       1     466 [. 0.90

  Alignments for each domain:
  == domain 1  score: 274.0 bits;  conditional E-value: 1.7e-85
                    EEEEEEECSTTTT..EEEEEEEEE-SSGTTTS-EEEEE--TTTB-THHHHHHTTSSEEEE..........TTTTSEEEE-TT-GGGCSEEEEE--S CS
  Peptidase_S10  11 qysGYldveeeed..kslFYwfveseknpeedplvlWLnGGPGCsSldGlleElGPfrvn..........kdstkkleenpysWnkvanvlfldqP 94 
                    + sGY++++e  +   +++Ywf+ese + ++dp +lW nGGPG+sS+ G+  ElGP+ +n          k++ ++l++n +sW+k+ ++l  d  
     KOO22145.1   1 MFSGYVNTSEMMGipCQVHYWFIESEGDATTDPTLLWTNGGPGASSMFGITVELGPLLLNeyslstdeyfKTGVPTLYRNDFSWSKLGSILMFDWA 96 
                    579******88773369***************************************************999999********************** PP

                    TTSTT-EETTSSG......S--SHHHHHHHHHHHHHHHHHHSTCGTTSEEEEEEETTHHHHHHHHHHHHHTHCCH--SSTSEEEEEEEESE-SBHH CS
  Peptidase_S10  95 vGvGFSysntksd......vktddeevaedlyefLkkffekfpeyksrdfyitGESYaGhyvPalakeilkknkkekkkkinLkGlligNglidea 184
                      vGFSy n++ +       k+dde++a+  y++L  +++ fpe +++++++tGESYaG+yvP la++il +n+ +   + +L G+++g+g++  +
     KOO22145.1  97 PPVGFSYCNNDPTgdgfscGKWDDERMAKLSYAALSGWYDLFPERRNNKLFLTGESYAGIYVPKLAQQILLHNDPK--VRPQLAGFAVGDGCLGTE 190
                    ********9998889999999****************************************************885..899*************** PP

                    HHHCCHHH.......HHHHTTSSHHHHHHHHHHHHEET....HHHHHHHHHHHHHHHHHHHHHHHHHCHCEETTETTSEETTSSEE.......... CS
  Peptidase_S10 185 eqvnsyve.......fayehgliseeeyeslkkacekk....eeleqesekcanllekaskvavekenkglnvynileeccklkae.......... 259
                    + v    +       f+y+h  is e +++l ++c ++    ++ e +  kc ++l+ ++     +e++g+  y ++ +c+++  e          
     KOO22145.1 191 SGVCGSGNgpwwdvlFLYGHHQISTELFDELVSECGMDylkyAKPEVDPIKCREALNRID-----YEKGGYFGYALYDDCIYQ--Eglrrrrrrrl 279
                    ***9999999*************************9998766444445567888888887.....5789***********663..2346678999* PP

                    ...............................HHHCTTCCCCTTTTTCHHHHHHHHTSHHHHHHTT--TTSSS--SB-HHHHHHCTCCC-SBCHHHH CS
  Peptidase_S10 260 ...............................lkksstdaqggedpydesyvekylnkkeVrkalhvnasvkkweecndsvfeqleddisksveeil 324
                                                     +    a +++++   +++ k++++  Vr+a+hv+ +++ +++         ++ ++k++ +++
     KOO22145.1 280 daslgrsegrvertervavaatteagggvpvRGHGWGGALNDYVCGGGDAYLKWIASGAVRTAMHVPLNSYFYDSDGGGP----YSGSEKNLMPFY 371
                    *****************************98444556788999***********************96656666555433....455556666666 PP

                    HHHHHTT.-EEEEEEETT-STT-HHHHHHHHHHTECTTECCSCCCEEEETTTCESEEEEEEEETT..EEEEEETT--SSHHHHSHHHHHHHHHHHH CS
  Peptidase_S10 325 eellesg.lrvliynGdvDlicnvlgteawikklelsgkkefrpwevspkkengqvaGyvkeyen..ltfltvkgaGHmvPedkpeealqllerfi 417
                    +++ +++ l+vliynGd D  +n ++  +w++++++  ++ +rpw+    ++  +++Gyv++y+   ++flt++g+GHmvP++kpe+al++l+ +i
     KOO22145.1 372 HQVAATTdLKVLIYNGDSDPSINSFEAANWTSHMGYIPTQTWRPWTL---DNCLRMGGYVTRYQDhrFDFLTIRGSGHMVPQFKPEPALEFLRAWI 464
                    66666555***************************************...78999********6667****************************9 PP

                    TT CS
  Peptidase_S10 418 sg 419
                    +g
     KOO22145.1 465 KG 466
                    85 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (480 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       312  (0.017402); expected 358.6 (0.02)
Passed bias filter:                      275  (0.0153383); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.50u 0.27s 00:00:00.77 Elapsed: 00:00:00.43
# Mc/sec: 3355.68
//
Query:       KOO22146.1  [L=285]
Description: hypothetical protein Ctob_000691 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
     0.0094   15.5   0.0      0.015   14.9   0.0    1.2  1  Glycos_transf_1  Glycosyl transferases group 1
  ------ inclusion threshold ------
       0.13   12.7   0.0       0.24   11.8   0.0    1.5  1  Glyco_trans_1_4  Glycosyl transferases group 1


Domain annotation for each model (and alignments):
>> Glycos_transf_1  Glycosyl transferases group 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.0   1.7e-06     0.015      73     125 ..     201     255 ..     196     263 .. 0.89

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 1.7e-06
                      CGGGEEECCH.SSSHHHHHHCESEEEEEESS.BSS-HHHHHHHHTT--EEEETTT CS
  Glycos_transf_1  73 dnviflgevs.redleellknadifvlpsis.EgfGivllEAmaaglpviasnag 125
                      +++i l ++s + ++ ++++ +d++++     E fG+++ E  a + pv++s+a+
       KOO22146.1 201 AHIIHLERSSdPVRKSAFIRTCDAMLHARSCgETFGLAVAEFSAHNRPVLTSKAK 255
                      6888899999999**************9666*********************965 PP

>> Glyco_trans_1_4  Glycosyl transferases group 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   2.7e-05      0.24      66     107 ..     215     258 ..     165     280 .. 0.82

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 2.7e-05
                      HHHHHHH-SEEEE--...---SHHHHHHHHTT-EEEE-TGGGTTT CS
  Glyco_trans_1_4  66 laellaaadvfvaPs...egfglkllEamaaglpvVatdvggiae 107
                      ++++++ +d ++      e+fgl++ E  a+ +pv +++++  a 
       KOO22146.1 215 KSAFIRTCDAMLHARscgETFGLAVAEFSAHNRPVLTSKAKQ-AS 258
                      788999*****99888999*******************9853.43 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (285 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       306  (0.0170673); expected 358.6 (0.02)
Passed bias filter:                      281  (0.0156729); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.42u 0.25s 00:00:00.67 Elapsed: 00:00:00.42
# Mc/sec: 2051.37
//
Query:       KOO22147.1  [L=284]
Description: hypothetical protein Ctob_000690 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.4e-56  191.3   0.0    1.6e-56  191.1   0.0    1.0  1  LCIB_C_CA  Limiting CO2-inducible proteins B/C beta carbonyic


Domain annotation for each model (and alignments):
>> LCIB_C_CA  Limiting CO2-inducible proteins B/C beta carbonyic anhydrases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  191.1   0.0   9.2e-61   1.6e-56       6     220 ..      27     242 ..      22     244 .. 0.92

  Alignments for each domain:
  == domain 1  score: 191.1 bits;  conditional E-value: 9.2e-61
                 HHHHHHHHHHHTTT--STTEEEEEE-BSSGGGHH...HHHHHHHHHSSEEE--BGGG--TTHHHHHHHHHTTS-TT-EEEEEEEEEEEB-TT--BTB-- CS
   LCIB_C_CA   6 dllarvekvlealgftkentllatslCrDEvnep...lkdklaevfgesFnlgGLaGfpfaGktGlgAalsHvPddGklvilagPHigiskeGeiGkvs 101
                  + + ++++l a+g+tk+ntl+a+ +C+DE+n +   + d +++++ge+F lgGLaG+pf+Gk G++A+++HvP +Gk +i+++PH+g++++G iGk+ 
  KOO22147.1  27 TMDRLTAQTLGARGYTKDNTLFASCICPDEINFIpgeMVDLMKTRWGENFALGGLAGLPFVGKAGFSAFAHHVPAEGKAFIIFAPHVGVEADGSIGKIL 125
                 6778899*************************987889************************************************************* PP

                 -TT-S---BTTHHHHHHHHHHH---------------TTTHHHHHHHHHHGGGHHH.HHH-SSHHHHHHHHHHHHHHHH.HHHHHHHTGGS-TT--EEE CS
   LCIB_C_CA 102 ReGrekeskaCGAlvaalkelkkeglekeskepgaldelDaeqsiikqrllkrlee.iekaeddlveltkvayeaikdd.lekliekttvdekkaevav 198
                 Re+++++s+aCGA+v+a+k+     l+++  +p a  + Da++++i ++l +++++ + +a d+++ +t+++y   +d  +++l e++   +++ evav
  KOO22147.1 126 REHQHESSTACGAAVGAYKA----ILANKGPVPTADPDYDAQIGFIIEKLGQQVNDlVGAAPDPIAFVTYQMYVLARDTfVKQLTEAGGIYDDAVEVAV 220
                 ********************....566688899999*******************736999************988776266677776669999***** PP

                 EEEEEEE--TTS-EEEEEEEEE CS
   LCIB_C_CA 199 vgGiqinspkeldffaplsfev 220
                 +gGiqin+  + d f+pl f+ 
  KOO22147.1 221 LGGIQINRAVGGDRFMPLMFQS 242
                 *************999999975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (284 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       268  (0.0149478); expected 358.6 (0.02)
Passed bias filter:                      258  (0.0143901); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.24s 00:00:00.64 Elapsed: 00:00:00.39
# Mc/sec: 2196.32
//
Query:       KOO22148.1  [L=158]
Description: hypothetical protein Ctob_000694 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (158 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       276  (0.0153941); expected 358.6 (0.02)
Passed bias filter:                      180  (0.0100396); expected 358.6 (0.02)
Passed Vit filter:                         8  (0.000446204); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.39u 0.26s 00:00:00.65 Elapsed: 00:00:00.43
# Mc/sec: 1095.39
//
Query:       KOO22149.1  [L=767]
Description: hypothetical protein Ctob_000703 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (767 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1499  (0.0836076); expected 358.6 (0.02)
Passed bias filter:                      434  (0.0242066); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.78u 0.26s 00:00:01.04 Elapsed: 00:00:00.47
# Mc/sec: 4912.46
//
Query:       KOO22150.1  [L=191]
Description: cupin 4 family protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.6e-25   89.6   0.0      3e-25   89.4   0.0    1.0  1  Cupin_4   Cupin superfamily protein
    0.00014   21.6   0.0     0.0012   18.6   0.0    1.9  1  Cupin_8   Cupin-like domain


Domain annotation for each model (and alignments):
>> Cupin_4  Cupin superfamily protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   89.4   0.0   3.4e-29     3e-25      88     213 ..      36     168 ..      16     190 .. 0.80

  Alignments for each domain:
  == domain 1  score: 89.4 bits;  conditional E-value: 3.4e-29
                 TEEEEC-HHHC-HHHHHHHHHHHH.S-EEEEEEEE-TTBBSS-SEE-SSEEEEEEEEC-EEEEEE-.....SCCCTTSSSEE--TTCCG--...S-SEE CS
     Cupin_4  88 avaqLlqpfrfepewrlddvmesf.slvgsnvYatpggsqgvgpHyDdyDVfllQleGrkrWrvyk.....ptvpelelkseeplkildef...epved 177
                  +++L+ p+      rl+ ++     +v++ +Y+tp +s  v++H Dd DVf+lQl Grk W vy      p+++e+  k+e+  + l e    ep+  
  KOO22150.1  36 RIDRLWPPIG-----RLCSALRADfLHVFAVMYLTPRDSRAVPAHTDDQDVFILQLAGRKAWTVYGspielPCTHEQLGKTEPIARSLWENelrEPILT 129
                 5666777774.....45555544446666***************************************99988888877777777666555568***** PP

                 EEE-TT-EEEE-TT-EEEEEBBT...-CCEEEEEECCEE CS
     Cupin_4 178 fvLepGDlLYlPrgviHqgvaed...esltlSvglrapt 213
                   L+pG lLYlPrg++H++++ +    sl++++ ++++ 
  KOO22150.1 130 AELAPGSLLYLPRGFVHEARCTKaggSSLHVTLTVQTSD 168
                 *********************998889999999887763 PP

>> Cupin_8  Cupin-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.6   0.0   1.4e-07    0.0012     144     243 ..      72     161 ..      44     166 .. 0.70

  Alignments for each domain:
  == domain 1  score: 18.6 bits;  conditional E-value: 1.4e-07
     Cupin_8 144 sslHkDhyeNlycvvrGrKkftLf.pPsdapflyeaslsptedgtvvssvdveepdlekfprlkdakkalevtlnaGevLylPalWfHeVksla..eep 239
                    H D  + +  ++ GrK +t++ +P + p+  e+  +    +    s++         ++l++   +l+++l +G  LylP+++ He++ ++  ++ 
  KOO22150.1  72 VPAHTDDQDVFILQLAGRKAWTVYgSPIELPCTHEQLGKT---EPIARSLW--------ENELRE--PILTAELAPGSLLYLPRGFVHEARCTKagGSS 157
                 5678888888888888888888886788888888776211...11111111........122333..699********************977755444 PP

     Cupin_8 240 lhla 243
                 lh++
  KOO22150.1 158 LHVT 161
                 4444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (191 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       207  (0.0115455); expected 358.6 (0.02)
Passed bias filter:                      201  (0.0112109); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.38u 0.25s 00:00:00.63 Elapsed: 00:00:00.39
# Mc/sec: 1473.42
//
Query:       KOO22151.1  [L=427]
Description: hypothetical protein Ctob_000704, partial [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    0.00066   20.1   0.1      0.034   14.5   0.0    2.4  2  Sulfotransfer_3  Sulfotransferase family
  ------ inclusion threshold ------
      0.016   14.7   0.0      0.032   13.7   0.0    1.4  1  Sulfotransfer_1  Sulfotransferase domain
       0.12   12.6   0.3       0.12   12.6   0.3    1.9  2  HCV_capsid       Hepatitis C virus capsid protein


Domain annotation for each model (and alignments):
>> Sulfotransfer_3  Sulfotransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.5   0.0   5.7e-06     0.034     105     171 ..     194     265 ..     146     288 .. 0.65
   2 ?    3.0   0.0     0.019   1.2e+02     182     206 ..     315     340 ..     294     351 .. 0.77

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 5.7e-06
                      EEEEESSGGG-HHHHHHHB......SSEEEEEEE--H.HHHHHHHHHTT--------.--..-.HHHHHHHHHHH CS
  Sulfotransfer_3 105 lvdKsPshlfrldlllelf......PdAkfihlvRdpvdtvlssyvslfgkkresys.edsld.eledaleewar 171
                       vd +P++l ++++l+ +        + +fi+l+Rdp+ +++s + ++++     +    s++ ++ +++ ++++
       KOO22151.1 194 SVDFTPNYLCHVGALHNINatardpSELRFIVLMRDPLMRAYSEFSMFTT---WGWDkGTSFStRTAEQMGRFRQ 265
                      34488999999999998752333335679********9999999988844...4555322233244456666555 PP

  == domain 2  score: 3.0 bits;  conditional E-value: 0.019
                      H.S-TTSEEEEEHHHHHH-HHHHHHH CS
  Sulfotransfer_3 182 r.lppdrfldvrYedLvadpegtlrr 206
                      r +  ++fl +r+edL++ +   l +
       KOO22151.1 315 RiFKREQFLFLRFEDLMRMKAPALLH 340
                      357889***********987766655 PP

>> Sulfotransfer_1  Sulfotransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.0   5.4e-06     0.032     104     196 ..     220     348 ..     213     362 .. 0.70

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 5.4e-06
                      T-EEEEEE--HHHHHHHHHHHHHHBT.................................TSTTT-S-HH..........HHHHHHHTTHSTTC- CS
  Sulfotransfer_1 104 nlKiiylvRnpkdvavSryhfsrslk.................................klkepetpfe..........effdlflegrvvcgs 154
                       l+ i+l+R+p  +a+S +  +  ++                                                     + f+      v+ + 
       KOO22151.1 220 ELRFIVLMRDPLMRAYSEFSMFTTWGwdkgtsfstrtaeqmgrfrqcnttlfhrpdllrT--------LpdeelfaymqACFKGLAMEYVTNSL 305
                      6899*****************999998888877776666666666555555555444442........03333332333333333338888888 PP

                      HHHHHHHHHHHTTTTTEEEEEHHHHHHHHHHHHHH.HHHHTT- CS
  Sulfotransfer_1 155 yfdhvkswlklrkkgnvlflrYEdlkkdpakeikk.iaeFlGi 196
                      y   + + l+ +k++++lflr+Edl +  a  +   +a F G+
       KOO22151.1 306 YPICIAGALRIFKREQFLFLRFEDLMRMKAPALLHlLANFTGL 348
                      888999999***************9876555544414556655 PP

>> HCV_capsid  Hepatitis C virus capsid protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.3   1.9e-05      0.12      47      83 ..      18      54 ..       7      78 .. 0.81
   2 ?   -1.2   0.3      0.38   2.3e+03      72     115 ..     134     179 ..     124     184 .. 0.64

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 1.9e-05
  HCV_capsid 47 avrktsersqprgrrqpipkarrrearswlspGtlgp 83
                a+r   +   pr rrqp p +r+ + r+w + G  g 
  KOO22151.1 18 ATRSGLNAEAPRARRQPKPVSRPFDPRNWSKKGCEGR 54
                5777788899*********************998765 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 0.38
  HCV_capsid  72 arswlspGtlgpstal.ralvGrdGscglagallsp.rgsraswgr 115
                 a + l  G + ps ++ ra   +   c +  +l+   + + ++w +
  KOO22151.1 134 AHTHLPAGRIHPSCCMaRASWPKRWGCRWHETLRMRfGRATSMWLQ 179
                 5667778888998776466666665588877665431334445665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (427 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       440  (0.0245412); expected 358.6 (0.02)
Passed bias filter:                      382  (0.0213063); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.48u 0.23s 00:00:00.71 Elapsed: 00:00:00.37
# Mc/sec: 3455.34
//
Query:       KOO22152.1  [L=575]
Description: hypothetical protein Ctob_000706 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.9e-07   31.0   0.0    4.9e-07   29.6   0.0    1.7  2  Abhydrolase_5  Alpha/beta hydrolase family
    3.2e-05   23.3   0.0    5.9e-05   22.5   0.0    1.4  1  Hydrolase_4    Serine aminopeptidase, S33
     0.0053   16.5   0.0     0.0092   15.7   0.0    1.3  1  PGAP1          PGAP1-like protein
  ------ inclusion threshold ------
      0.022   15.4   0.7      0.022   15.4   0.7    2.7  2  Abhydrolase_6  Alpha/beta hydrolase family
      0.032   13.7   0.1      0.064   12.7   0.1    1.4  1  Peptidase_S9   Prolyl oligopeptidase family


Domain annotation for each model (and alignments):
>> Abhydrolase_5  Alpha/beta hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.6   0.0   1.4e-10   4.9e-07      43     119 ..      89     167 ..      39     173 .. 0.87
   2 ?   -3.0   0.0       1.5   5.6e+03      67      88 ..     512     533 ..     507     535 .. 0.80

  Alignments for each domain:
  == domain 1  score: 29.6 bits;  conditional E-value: 1.4e-10
  Abhydrolase_5  43 knkaeeiikeapklekfvvgGhslGGvvasrfaaee.ekiegvvflasYPe.kdelselskkvlsivgteDgvlnvksl 119
                    kn +e+++k+  + ++ v+ GhslGGv+a ++++++ ++ +++v++++    k   + ++ +vl++ gt Dg+l v++ 
     KOO22152.1  89 KNVTEQMVKAGMSANRSVILGHSLGGVMAQQYVTSHvGEFDALVLYGATVLrKYRTTPFGAPVLTLDGTLDGLLRVTRQ 167
                    677889999999999*******************9966****99998877648888999***************98865 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 1.5
  Abhydrolase_5  67 GGvvasrfaaeeekiegvvfla 88 
                      v+a  fa+e++++  v++l 
     KOO22152.1 512 VDVAAPYFATENKNLGDVIYLE 533
                    5678889999****999*9985 PP

>> Hydrolase_4  Serine aminopeptidase, S33
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.5   0.0   1.6e-08   5.9e-05      68     114 ..      94     141 ..      83     173 .. 0.77

  Alignments for each domain:
  == domain 1  score: 22.5 bits;  conditional E-value: 1.6e-08
  Hydrolase_4  68 kvkeehpel.plfllGhSmGGliallyllrypdkvaglilsaPalkik 114
                  ++++    + + ++lGhS+GG++a++y++ +  ++++l+l ++ +  k
   KOO22152.1  94 QMVKAGMSAnRSVILGHSLGGVMAQQYVTSHVGEFDALVLYGATVLRK 141
                  4443333333889****************************9987544 PP

>> PGAP1  PGAP1-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.0   2.6e-06    0.0092      76     154 ..      88     175 ..      84     238 .. 0.62

  Alignments for each domain:
  == domain 1  score: 15.7 bits;  conditional E-value: 2.6e-06
       PGAP1  76 IkyIlslysssekeptsviliGHSmGGivaraaltlkn.....yikqsv...ntiltla..sPhalpplsfdkdi...lklyervnefwkke 154
                 Ik++++++ ++    ++ +++GHS+GG++a+  +t +      +    v    t+l +   +P  +p+l++d+++   l++  + ++ w++ 
  KOO22152.1  88 IKNVTEQMVKAGMSANRSVILGHSLGGVMAQQYVTSHVgefdaL----VlygATVLRKYrtTPFGAPVLTLDGTLdglLRVTRQAEAWWHQV 175
                 677777775555555556678**********9998776433320....22223444432338888888888876511144445555555555 PP

>> Abhydrolase_6  Alpha/beta hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.4   0.7     6e-06     0.022      62      96 ..      94     150 ..      39     191 .. 0.57
   2 ?  -13.1  20.3         5   1.8e+04      33     127 ..     193     326 ..     176     521 .. 0.61

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 6e-06
                    ........TTSEEEEEETCHHHHHHHHHHCC.....EEEEES-.............. CS
  Abhydrolase_6  62 a......gggpvvlvGHSlGGalalaaapla...lvvgvlldp.............p 96 
                    +      ++++ v++GHSlGG++a++++ +    +++ vl+ +             p
     KOO22152.1  94 QmvkagmSANRSVILGHSLGGVMAQQYVTSHvgeFDALVLYGAtvlrkyrttpfgaP 150
                    033344477888**************4444467654558888834444444222211 PP

  == domain 2  score: -13.1 bits;  conditional E-value: 5
                    --TTS.TS-GGCS--HHHCHHHHHHHCCTT..TTSE......EEEEETCHHHHHHHHHHCC...........EEEEES-................. CS
  Abhydrolase_6  33 DlpGh.Grsdpppldledladlaalldelaagggpv......vlvGHSlGGalalaaapla.........lvvgvlldp................. 95 
                    D  +h   s++pp ++ +++dl+a l+e ++  +++        +  S+G+  a+ aa  a         +    l++p                 
     KOO22152.1 193 DGLNHwSISSGPPPSFVRAHDLSASLNETVG--HAAlatalsSFITASFGAGAAQVAAVKAlsdaynstaR----LVAPlvealelegsthvgtpc 282
                    5555543457888888888888554444432..22223334688999999664444333334565555444....444444448888888888777 PP

                    ...........................----TTT.....S----TTHHHHHHTT-CCCCHCC CS
  Abhydrolase_6  96 .........................pptalpagl.....laaalelllallallrllawlsr 127
                                             pp  lp        +                 aw++ 
     KOO22152.1 283 dsdyptnphceypmfpntslgprkpPPDPLP--PvdctcG----------------SAWVMQ 326
                    7776666665555544444444442111111..1223442................233321 PP

>> Peptidase_S9  Prolyl oligopeptidase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.1   1.8e-05     0.064      52      95 ..      92     134 ..      87     151 .. 0.80

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 1.8e-05
                   HHHHHHTTS--GGGEEEEEETHHHHHHHHHHHH-GGG-SEEEEE CS
  Peptidase_S9  52 aealakegyvdserlaitGgSyGGyltgaalnqrpdlFkaavae 95 
                   +e ++k g ++++r +i G+S GG+++   ++++   F+a+v  
    KOO22152.1  92 TEQMVKAG-MSANRSVILGHSLGGVMAQQYVTSHVGEFDALVLY 134
                   55555555.6799**************************99975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (575 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       341  (0.0190195); expected 358.6 (0.02)
Passed bias filter:                      290  (0.0161749); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.54u 0.25s 00:00:00.79 Elapsed: 00:00:00.40
# Mc/sec: 4290.19
//
Query:       KOO22153.1  [L=808]
Description: voltage-gated ion channel superfamily [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    3.7e-24   84.5  10.1    5.1e-14   52.0   2.8    3.7  4  Ion_trans_2  Ion channel
    4.1e-10   39.0   0.3    9.8e-10   37.8   0.3    1.7  1  Sgf11        Sgf11 (transcriptional regulation protein)
    8.4e-07   28.5  11.8      0.033   13.4   0.1    3.2  3  Ion_trans    Ion transport protein
  ------ inclusion threshold ------
      0.033   13.7   0.3      0.033   13.7   0.3    3.4  3  EF-hand_1    EF hand
       0.64   10.1   7.8       0.16   12.0   0.3    2.9  3  EF-hand_6    EF-hand domain


Domain annotation for each model (and alignments):
>> Ion_trans_2  Ion channel
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   1.2       1.6   5.6e+03      54      73 ..      39      58 ..      34      61 .. 0.81
   2 ?   -1.0   0.6      0.49   1.7e+03      23      36 ..     150     163 ..     121     183 .. 0.51
   3 !   45.8   0.8   1.2e-15   4.5e-12      20      76 ..     369     427 ..     354     430 .. 0.83
   4 !   52.0   2.8   1.4e-17   5.1e-14       8      75 ..     486     549 ..     477     552 .. 0.83

  Alignments for each domain:
  == domain 1  score: -2.6 bits;  conditional E-value: 1.6
                 HHHHHHHHHHHHHHHHHHHH CS
  Ion_trans_2 54 ftivyillGlalfalflavl 73
                 +t+v+ +lG+++f+ +la +
   KOO22153.1 39 LTVVTCILGYLYFGHLLACF 58
                 68899999999998887765 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 0.49
                  --HHHHHHHHHHHH CS
  Ion_trans_2  23 wsfldalYfsfvtl 36 
                  ++ ++++ f+f t+
   KOO22153.1 150 MNPSESMLFMFCTI 163
                  34444444444443 PP

  == domain 3  score: 45.8 bits;  conditional E-value: 1.2e-15
                  .T---HHHHHHHHHHHHTTS----SSTT.----.-HHHHHHHHHHHHHHHHHHHHHHHH CS
  Ion_trans_2  20 wekwsfldalYfsfvtltTiGYGdivpe.tdag.rlftivyillGlalfalflavlgkv 76 
                   ++w+++++lYf +    T+GYGd++p+ + +g r+ft+vyi++G++++++ l+ l+ +
   KOO22153.1 369 DKGWNVWESLYFLMGAAATVGYGDLYPDpSVQGsRAFTVVYIIFGVGVVFAQLSALIAR 427
                  3467************************766657*****************99988766 PP

  == domain 4  score: 52.0 bits;  conditional E-value: 1.4e-17
                  HHHHHHHHT....T---HHHHHHHHHHHHTTS----SSTT-----HHHHHHHHHHHHHHHHHHHHHHH CS
  Ion_trans_2   8 ifgaviysleegwekwsfldalYfsfvtltTiGYGdivpetdagrlftivyillGlalfalflavlgk 75 
                  +f+av+       e+w+f +a Y +fvt+tT+G+Gd+  +td+gr+ +++ il+ +++++++l ++++
   KOO22153.1 486 AFAAVFCE----IEGWDFGSACYHCFVTITTVGFGDVKINTDGGRMWALFHILFSVSILTATLGDVSE 549
                  23333333....5899***********************************************99875 PP

>> Sgf11  Sgf11 (transcriptional regulation protein)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.8   0.3   2.7e-13   9.8e-10       3      31 ..     758     787 ..     756     789 .. 0.84

  Alignments for each domain:
  == domain 1  score: 37.8 bits;  conditional E-value: 2.7e-13
                 -EEE-TTTSSEEEGGGHHHHHHHHCH.HXX CS
       Sgf11   3 eyvtCpnCgRqiaasRFApHLekClg.rgr 31 
                 e++ C nCg +  a+R+ApHLe+C+  +gr
  KOO22153.1 758 ETIICTNCGTSLTANRYAPHLERCMLgKGR 787
                 5678********************952555 PP

>> Ion_trans  Ion transport protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.4   2.1   0.00015      0.54     104     228 ..      10     175 ..       2     184 .. 0.62
   2 !   13.4   0.1   9.3e-06     0.033     178     238 ..     373     430 ..     340     436 .. 0.90
   3 !   11.0   0.5   5.2e-05      0.19     178     226 ..     498     540 ..     471     552 .. 0.84

  Alignments for each domain:
  == domain 1  score: 9.4 bits;  conditional E-value: 0.00015
                 GGGGHHHCHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH...TTSCCCC......CC...SCCSTSSSTTTSSSSSS............ CS
   Ion_trans 104 lrllklisrleglrtlvtalirsvkdllnvlllllvvlfifaligvqlf...kgklrek......ne...caktwenpnngntnFdn............ 178
                 +rl+kl++ ++  r+l + ++  + d+  + +++++++++++   +  f   +g+l e+      ++   c++t+  ++ +n  F+             
  KOO22153.1  10 MRLVKLVRLVKASRILKRWWTSFALDFSTLTVVTCILGYLYFGHLLACFlvlGGSLAETpldtwkGSkkfCVQTDDPHDVNNEFFQPyktwvlmpppsn 108
                 555555555555555555666666666666666666666666555444433366666555555551156676666666555555666999999999999 PP

                 .................HHHHHHHHHHHHTTS..SHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHH CS
   Ion_trans 179 .................fftallwlfrlmtte..gwgdilyatldekskvaliyfvifiilgsflllNl 228
                                   +++++w++ l+++   g +d +y + +e+  + +++  i+ +l++ ++++ 
  KOO22153.1 109 pdiahltdvwcvgpyelWVMTFYWMIMLISGAagGDTDAIYMNPSES--MLFMFCTIVACLINSVIIAS 175
                 99999***********9999*******99999444444444444444..45555555555555555554 PP

  == domain 2  score: 13.4 bits;  conditional E-value: 9.3e-06
                 SHHHHHHHHHHHHTTSSHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
   Ion_trans 178 nfftallwlfrlmttegwgdilyatldekskvaliyfvifiilgsflllNlliaviadnfq 238
                 n++++l++l+  + t+g+gd+++++  +    + ++ v++ii+g+ ++++ l a+ia  +q
  KOO22153.1 373 NVWESLYFLMGAAATVGYGDLYPDPSVQG---SRAFTVVYIIFGVGVVFAQLSALIARCIQ 430
                 5889********************99998...8899**************99999987666 PP

  == domain 3  score: 11.0 bits;  conditional E-value: 5.2e-05
                 SHHHHHHHHHHHHTTSSHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHH CS
   Ion_trans 178 nfftallwlfrlmttegwgdilyatldekskvaliyfvifiilgsflll 226
                 +f++a +  f+++tt+g+gd+  +t +++      + ++f il+s+ +l
  KOO22153.1 498 DFGSACYHCFVTITTVGFGDVKINTDGGR------MWALFHILFSVSIL 540
                 5999*************************......66666666655555 PP

>> EF-hand_1  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.5   1.1      0.32   1.1e+03       9      19 ..     449     459 ..     447     460 .. 0.80
   2 ?    1.1   0.1       0.1   3.6e+02       9      15 ..     576     582 ..     572     592 .. 0.85
   3 ?   13.7   0.3   9.2e-06     0.033       2      22 ..     607     627 ..     606     630 .. 0.88

  Alignments for each domain:
  == domain 1  score: -0.5 bits;  conditional E-value: 0.32
                 HTTTSSSEEEH CS
   EF-hand_1   9 fDkDgdGkIdf 19 
                 +D DgdG  df
  KOO22153.1 449 IDIDGDGIADF 459
                 7******7665 PP

  == domain 2  score: 1.1 bits;  conditional E-value: 0.1
                 HTTTSSS CS
   EF-hand_1   9 fDkDgdG 15 
                 +DkDg+G
  KOO22153.1 576 LDKDGNG 582
                 7*****9 PP

  == domain 3  score: 13.7 bits;  conditional E-value: 9.2e-06
                 HHHHHHHHTTTSSSEEEHHHH CS
   EF-hand_1   2 lkeiFrefDkDgdGkIdfeEf 22 
                 + ++F+++D Dg+G Id ++ 
  KOO22153.1 607 FSKLFEKLDIDGSGLIDADDI 627
                 5689*************9986 PP

>> EF-hand_6  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.4       3.3   1.2e+04       9      15 ..     449     455 ..     447     459 .. 0.82
   2 ?    2.0   0.1     0.072   2.6e+02       9      24 ..     576     590 ..     573     596 .. 0.81
   3 ?   12.0   0.3   4.5e-05      0.16       3      22 ..     608     627 ..     606     630 .. 0.88

  Alignments for each domain:
  == domain 1  score: -3.2 bits;  conditional E-value: 3.3
   EF-hand_6   9 fDkdgdG 15 
                 +D dgdG
  KOO22153.1 449 IDIDGDG 455
                 799***9 PP

  == domain 2  score: 2.0 bits;  conditional E-value: 0.072
   EF-hand_6   9 fDkdgdGkidaeElrk 24 
                 +Dkdg+G +d+ E++ 
  KOO22153.1 576 LDKDGNG-VDKFEFVT 590
                 7999999.88888876 PP

  == domain 3  score: 12.0 bits;  conditional E-value: 4.5e-05
   EF-hand_6   3 reaFklfDkdgdGkidaeEl 22 
                  ++F+++D dg+G ida+++
  KOO22153.1 608 SKLFEKLDIDGSGLIDADDI 627
                 589***************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (808 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       679  (0.0378716); expected 358.6 (0.02)
Passed bias filter:                      534  (0.0297841); expected 358.6 (0.02)
Passed Vit filter:                        54  (0.00301188); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.64u 0.26s 00:00:00.90 Elapsed: 00:00:00.41
# Mc/sec: 5869.68
//
Query:       KOO22154.1  [L=201]
Description: ATP synthase subunit mitochondrial [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.2e-39  136.2   1.9    1.5e-39  135.9   1.9    1.0  1  OSCP      ATP synthase delta (OSCP) subunit


Domain annotation for each model (and alignments):
>> OSCP  ATP synthase delta (OSCP) subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  135.9   1.9   8.3e-44   1.5e-39       3     171 ..      25     196 ..      24     197 .. 0.94

  Alignments for each domain:
  == domain 1  score: 135.9 bits;  conditional E-value: 8.3e-44
        OSCP   3 rrYAkAlfelAkekgaleeveeelealeavlaedkklaellsnpavsaeekkdlleelfke.klseavknflkllaenkRlalLpeiaeefeellaear 100
                 +rYA+A++ +A +k+al++v+++l+ l+++l+++++l+++++np++++e+k++ + +l+++ k+++++kn +++lae +R+  + ++++++ e++ +a+
  KOO22154.1  25 GRYANAIYAAAAQKNALAAVTDDLSLLKETLKASATLHHFVTNPSIPRETKASGIVKLLTSaKADVVTKNAMATLAEGGRMHDVFKVIDNYMEIITAAK 123
                 59*************************************************99999955555************************************* PP

        OSCP 101 giveaeVtsavpLtdeqlekleaalakklgk..kkvkleekvdpsliGGvvvkvgdkviDgSvkgkLeklkeq 171
                 g+v+a +tsa+pL +e++++++a+l + l+k  +kv+   kvd+sl+ G++v++gdk++D+Sv+++L+kl++ 
  KOO22154.1 124 GEVNAVITSAAPLPEEEKAAIRAQLVSFLDKgqTKVESVFKVDASLVSGITVEIGDKFLDASVATQLKKLHSL 196
                 *************************888754115788889******************************875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (201 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       664  (0.037035); expected 358.6 (0.02)
Passed bias filter:                      451  (0.0251548); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.26s 00:00:00.68 Elapsed: 00:00:00.42
# Mc/sec: 1439.00
//
Query:       KOO22155.1  [L=320]
Description: set and mynd domain-containing protein 3 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.6e-08   34.4   0.1      5e-08   33.5   0.0    1.6  2  SET       SET domain


Domain annotation for each model (and alignments):
>> SET  SET domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.5   0.0   2.8e-12     5e-08     112     168 ..      82     134 ..       8     135 .. 0.70
   2 ?   -2.9   0.0      0.44   7.9e+03      58      66 ..     265     273 ..     220     295 .. 0.57

  Alignments for each domain:
  == domain 1  score: 33.5 bits;  conditional E-value: 2.8e-12
                 ETEEEEEECCC......GTTGGGCEEXSSSSEEEEEEEETTSSEEEEEESSXBXTTEEEEEXT CS
                 xxxxxxxxxxx......xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
         SET 112 daralksgnga......gplarflNHsCdpNcnltvqnvlrgprvavfAtrdIkkGeEltidY 168
                 d++       a      +p a+++NHsC pNc    ++  +g rv+++A+ dI++G E t +Y
  KOO22155.1  82 DSTG------AirgwlmYPRASMMNHSCLPNC--GCVV--EGVRVTFYALVDIAAGVECTQCY 134
                 2333......14444469**************..6666..68****************99888 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 0.44
                 HHTTSSHHH CS
                 xxxxxxxxx RF
         SET  58 asastllqk 66 
                 ++a+++  +
  KOO22155.1 265 LDAPQEAAA 273
                 222222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (320 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       718  (0.0400469); expected 358.6 (0.02)
Passed bias filter:                      359  (0.0200234); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.26s 00:00:00.72 Elapsed: 00:00:00.42
# Mc/sec: 2264.15
//
Query:       KOO22156.1  [L=305]
Description: hypothetical protein Ctob_000689 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.1e-37  128.5   1.0    7.2e-19   68.0   0.1    2.2  2  MPC       Mitochondrial pyruvate carriers


Domain annotation for each model (and alignments):
>> MPC  Mitochondrial pyruvate carriers
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.1   0.1   2.3e-20     4e-16      16     102 ..      75     163 ..      61     171 .. 0.87
   2 !   68.0   0.1     4e-23   7.2e-19       5      89 ..     197     281 ..     195     285 .. 0.96

  Alignments for each domain:
  == domain 1  score: 59.1 bits;  conditional E-value: 2.3e-20
         MPC  16 hFWaPvlkwglviaglsDl.krpaekiSltqnlaLlatgliwtrys.lvikPkNyllaavnfvlelvglvqvsRilkyrlskkdekkea 102
                  F +  ++w l ++++ D  k  +e i l+++la+la++l+++r++ + ++PkNy+l a ++++ ++++ q+ R+++y+l+++  +k++
  KOO22156.1  75 GFVGAFCNWFLGLSAVLDSlKLGPEVIALPMTLAMLAYSLLFSRWAgWDVTPKNYILSASHMFNVAAQANQLRRVITYKLKTQPGAKAE 163
                 5778889*********9963779**********************9899******************************9988766554 PP

  == domain 2  score: 68.0 bits;  conditional E-value: 4e-23
         MPC   5 flnsetgkktvhFWaPvlkwglviaglsDlkrpaekiSltqnlaLlatgliwtryslvikPkNyllaavnfvlelvglvqvsRil 89 
                 fl s+ g+ t+h W Pv+k  l+ a+l+Dl++p+ kiSl+q  aL+ tg i++ y l ++P Ny l +vn++l+l  l +++R +
  KOO22156.1 197 FLASKGGPFTIHPWPPVTKLFLSAASLADLHKPTSKISLAQYGALTLTGFIFSFYGLFVTPINYPLTGVNIILFLSSLWHLTRKI 281
                 678899999***********************************************************************99975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (305 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       559  (0.0311785); expected 358.6 (0.02)
Passed bias filter:                      329  (0.0183502); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.26s 00:00:00.70 Elapsed: 00:00:00.42
# Mc/sec: 2175.91
//
Query:       KOO22157.1  [L=237]
Description: hypothetical protein Ctob_000687 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (237 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       347  (0.0193541); expected 358.6 (0.02)
Passed bias filter:                      319  (0.0177924); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.43u 0.21s 00:00:00.64 Elapsed: 00:00:00.39
# Mc/sec: 1828.32
//
Query:       KOO22158.1  [L=276]
Description: hypothetical protein Ctob_000701 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (276 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       192  (0.0107089); expected 358.6 (0.02)
Passed bias filter:                      122  (0.00680462); expected 358.6 (0.02)
Passed Vit filter:                         8  (0.000446204); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.40u 0.23s 00:00:00.63 Elapsed: 00:00:00.39
# Mc/sec: 2130.22
//
Query:       KOO22159.1  [L=282]
Description: hypothetical protein Ctob_001126 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (282 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       410  (0.022868); expected 358.6 (0.02)
Passed bias filter:                      274  (0.0152825); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.42u 0.26s 00:00:00.68 Elapsed: 00:00:00.41
# Mc/sec: 2064.21
//
Query:       KOO22160.1  [L=888]
Description: hypothetical protein Ctob_001127 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    5.9e-18   65.2   4.8    6.6e-11   42.7   0.3    2.9  2  Ank_2          Ankyrin repeats (3 copies)
    6.3e-15   55.1   5.6    2.2e-06   27.8   0.3    4.5  4  Ank_5          Ankyrin repeats (many copies)
      6e-14   52.2   1.1    5.9e-06   26.7   0.0    3.7  3  Ank_4          Ankyrin repeats (many copies)
    7.2e-11   41.3   3.2      0.047   14.2   0.0    5.7  5  Ank_3          Ankyrin repeat
      8e-11   42.1   2.5      8e-11   42.1   2.5    6.7  6  TPR_12         Tetratricopeptide repeat
    1.9e-09   37.1   1.1    6.2e-08   32.3   0.1    6.4  7  TPR_10         Tetratricopeptide repeat
    1.9e-09   37.5  18.7     0.0016   18.8   1.1    5.7  5  Ank            Ankyrin repeat
    2.3e-07   30.4   4.7     0.0054   16.5   1.5    2.9  2  TPR_1          Tetratricopeptide repeat
    1.9e-05   24.4   0.2    7.9e-05   22.4   0.2    2.1  1  PDZ_6          PDZ domain
     0.0024   17.9   3.3     0.0024   17.9   3.3    5.3  4  TPR_2          Tetratricopeptide repeat
     0.0032   17.8   0.1     0.0081   16.5   0.1    1.7  1  PDZ            PDZ domain
  ------ inclusion threshold ------
      0.018   15.4   0.0        0.1   13.1   0.0    2.4  1  TPR_17         Tetratricopeptide repeat
      0.036   13.7   1.6       0.44   10.1   1.3    2.5  2  PI3K_P85_iSH2  Phosphatidylinositol 3-kinase regulatory subun
      0.055   13.5   6.0       0.52   10.5   0.0    3.8  3  TPR_7          Tetratricopeptide repeat
       0.13   12.6   0.0       0.36   11.2   0.0    1.7  1  PDZ_2          PDZ domain


Domain annotation for each model (and alignments):
>> Ank_2  Ankyrin repeats (3 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.7   0.3   5.5e-14   6.6e-11       1      81 [.      12     102 ..      12     104 .. 0.89
   2 !   31.8   0.8   1.3e-10   1.6e-07       8      79 ..      88     163 ..      84     168 .. 0.85

  Alignments for each domain:
  == domain 1  score: 42.7 bits;  conditional E-value: 5.5e-14
       Ank_2   1 LhlAakngnlelvklLl.egadpn.k..ngktaLhyAakngnleivklLleh......adndgrtpLhyAarsghleivklLlekgadinl 81 
                 L  Aa+ g++e ++lL+ +ga +n k  +g taL +Aa +g++ +++lLl h      a+++g tp ++Aa  +   +++lL+ kga++++
  KOO22160.1  12 LLGAAEAGDSERLQLLIgAGASVNtKraDGSTALLLAALGGHTSVLQLLLTHdadvtiAKENGATPVFAAAAVDAVGCIQLLCAKGANPDA 102
                 5679999999*******99999998468***********************99665444499*********99**********99**9976 PP

  == domain 2  score: 31.8 bits;  conditional E-value: 1.3e-10
       Ank_2   8 gnlelvklLl.egadpn..k.ngktaLhyAakngnleivklLleh......adndgrtpLhyAarsghleivklLlekgadi 79 
                 g   +++lL  +ga+p+  +  g t+L+ Aa++++   ++ Ll+       +d+ g+ +Lh Aar g le++ +Ll   ad 
  KOO22160.1  88 G---CIQLLCaKGANPDapNvHGVTPLQMAAHKDHAASARVLLQLgaaptaTDQAGNAALHKAARAGALEAIGVLL---ADA 163
                 5...899998999999985489************9999*****944567767799********************9...343 PP

>> Ank_5  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.2   0.1     1e-07   0.00012       5      53 ..      31      78 ..      26      78 .. 0.93
   2 !   27.8   0.3   1.9e-09   2.2e-06       4      56 .]      96     147 ..      93     147 .. 0.94
   3 !   17.2   0.3   3.9e-06    0.0046       1      44 [.     126     165 ..     126     190 .. 0.88
   4 ?   -2.3   0.0       5.2   6.2e+03      22      45 ..     777     799 ..     777     801 .. 0.79

  Alignments for each domain:
  == domain 1  score: 22.2 bits;  conditional E-value: 1e-07
       Ank_5  5 gpadvnrldgggntpLhvAakygaadvvrlLlargadlnltdsrGltal 53
                g a+vn+++ +g t+L +Aa +g+ +v++lLl + ad ++  ++G t++
  KOO22160.1 31 G-ASVNTKRADGSTALLLAALGGHTSVLQLLLTHDADVTIAKENGATPV 78
                4.99*****************************************9996 PP

  == domain 2  score: 27.8 bits;  conditional E-value: 1.9e-09
       Ank_5   4 hgpadvnrldgggntpLhvAakygaadvvrlLlargadlnltdsrGltaldlA 56 
                 +g a++++++ +g+tpL +Aa++ +a  +r+Ll  ga++++td  G+ al+ A
  KOO22160.1  96 KG-ANPDAPNVHGVTPLQMAAHKDHAASARVLLQLGAAPTATDQAGNAALHKA 147
                 56.9*********************************************9876 PP

  == domain 3  score: 17.2 bits;  conditional E-value: 3.9e-06
       Ank_5   1 LlehgpadvnrldgggntpLhvAakygaadvvrlLlargadlnl 44 
                 Ll+ g a++ ++d+ gn +Lh Aa++ga++ + +Ll   ad+n 
  KOO22160.1 126 LLQLG-AAPTATDQAGNAALHKAARAGALEAIGVLL---ADANE 165
                 78889.9*****************************...44443 PP

  == domain 4  score: -2.3 bits;  conditional E-value: 5.2
       Ank_5  22 vAak.ygaadvvrlLlargadlnlt 45 
                 +Aa+ +++ d ++ L+  +++l l+
  KOO22160.1 777 MAAYkAQSYDEAEALF--REALQLK 799
                 577779**********..7777665 PP

>> Ank_4  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.7   0.0   4.9e-09   5.9e-06       5      55 .]      12      61 ..       9      61 .. 0.93
   2 !   13.4   0.1   7.6e-05     0.091       3      55 .]      76     127 ..      74     127 .. 0.91
   3 !   18.8   0.1   1.5e-06    0.0018       3      55 .]     109     160 ..     107     160 .. 0.94

  Alignments for each domain:
  == domain 1  score: 26.7 bits;  conditional E-value: 4.9e-09
       Ank_4  5 LhyaaisgrlelvrlLlekgadinaqdnrsGetalhiAakrgnveilklLl 55
                L  aa++g+ e ++lL+  ga++n    ++G tal  Aa++g+ ++l+lLl
  KOO22160.1 12 LLGAAEAGDSERLQLLIGAGASVNTK-RADGSTALLLAALGGHTSVLQLLL 61
                5558999******************9.***********************8 PP

  == domain 2  score: 13.4 bits;  conditional E-value: 7.6e-05
       Ank_4   3 taLhyaaisgrlelvrlLlekgadinaqdnrsGetalhiAakrgnveilklLl 55 
                 t+ ++aa+   + +++lL +kga+++a  n  G t+l++Aa + +   ++ Ll
  KOO22160.1  76 TPVFAAAAVDAVGCIQLLCAKGANPDAP-NVHGVTPLQMAAHKDHAASARVLL 127
                 7889999999999**************8.*************99988888876 PP

  == domain 3  score: 18.8 bits;  conditional E-value: 1.5e-06
       Ank_4   3 taLhyaaisgrlelvrlLlekgadinaqdnrsGetalhiAakrgnveilklLl 55 
                 t+L +aa++ +  ++r Ll+ ga + a+ +  G+ alh+Aa+ g +e++  Ll
  KOO22160.1 109 TPLQMAAHKDHAASARVLLQLGAAPTAT-DQAGNAALHKAARAGALEAIGVLL 160
                 89**************************.999************999998876 PP

>> Ank_3  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6   0.0     0.012        15       2      30 ..       8      35 ..       7      36 .. 0.91
   2 !   14.2   0.0     4e-05     0.047       1      30 [.      40      68 ..      40      69 .. 0.93
   3 ?    2.7   0.0      0.23   2.7e+02       1      30 [.      73     101 ..      73     102 .. 0.88
   4 ?    6.3   0.0     0.015        18       1      29 [.     106     133 ..     106     135 .. 0.90
   5 !    7.3   0.0    0.0071       8.5       2      23 ..     140     161 ..     139     167 .. 0.88

  Alignments for each domain:
  == domain 1  score: 6.6 bits;  conditional E-value: 0.012
       Ank_3  2 GetpLhlAarsgnleivkfLlenkgadvn 30
                 et+L  Aa++g+ e++++L+   ga vn
  KOO22160.1  8 DETLLLGAAEAGDSERLQLLIG-AGASVN 35
                5899999***************.8**999 PP

  == domain 2  score: 14.2 bits;  conditional E-value: 4e-05
       Ank_3  1 nGetpLhlAarsgnleivkfLlenkgadvn 30
                +G t+L lAa+ g+++++++Ll  + adv 
  KOO22160.1 40 DGSTALLLAALGGHTSVLQLLLT-HDADVT 68
                699********************.8**985 PP

  == domain 3  score: 2.7 bits;  conditional E-value: 0.23
       Ank_3   1 nGetpLhlAarsgnleivkfLlenkgadvn 30 
                 nG tp + Aa  + +  +++L+  kga+++
  KOO22160.1  73 NGATPVFAAAAVDAVGCIQLLCA-KGANPD 101
                 79999999999999987999999.9***98 PP

  == domain 4  score: 6.3 bits;  conditional E-value: 0.015
       Ank_3   1 nGetpLhlAarsgnleivkfLlenkgadv 29 
                 +G tpL +Aa+ ++ + ++ Ll+  ga +
  KOO22160.1 106 HGVTPLQMAAHKDHAASARVLLQ-LGAAP 133
                 689************88******.99876 PP

  == domain 5  score: 7.3 bits;  conditional E-value: 0.0071
       Ank_3   2 GetpLhlAarsgnleivkfLle 23 
                 G+ +Lh Aar+g le +  Ll 
  KOO22160.1 140 GNAALHKAARAGALEAIGVLLA 161
                 8899***********9999987 PP

>> TPR_12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.1       2.3   2.8e+03      39      54 ..     117     132 ..     112     142 .. 0.85
   2 ?   -1.7   2.5       3.1   3.7e+03      45      73 ..     234     262 ..     220     265 .. 0.81
   3 ?    1.4   3.4      0.33     4e+02      37      71 ..     279     313 ..     271     315 .. 0.82
   4 ?   -2.8   1.8       6.9   8.3e+03      35      35 ..     339     339 ..     315     369 .. 0.50
   5 ?   -0.5   0.9       1.3   1.6e+03      10      39 ..     425     455 ..     417     460 .. 0.81
   6 !   42.1   2.5   6.7e-14     8e-11       5      76 ..     772     841 ..     769     842 .. 0.94

  Alignments for each domain:
  == domain 1  score: -1.3 bits;  conditional E-value: 2.3
      TPR_12  39 pdhpltattlrnLgrl 54 
                 +dh++ a++l  Lg +
  KOO22160.1 117 KDHAASARVLLQLGAA 132
                 699999****999976 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 3.1
      TPR_12  45 attlrnLgrlyralgryeeAlelleeala 73 
                 +++ +n +   r+++r+++A++l  +a +
  KOO22160.1 234 LEASINHALEARKAERTRAAEALAAHAAE 262
                 67788889999999999999999988876 PP

  == domain 3  score: 1.4 bits;  conditional E-value: 0.33
      TPR_12  37 lGpdhpltattlrnLgrlyralgryeeAlelleea 71 
                 +G   +++a +  + +++++a  ++eeA+++le+a
  KOO22160.1 279 HGAMDEAAALVEGACAEAHEAHAKLEEAHARLEKA 313
                 555566788888999******************98 PP

  == domain 4  score: -2.8 bits;  conditional E-value: 6.9
      TPR_12  35 r 35 
                 +
  KOO22160.1 339 E 339
                 1 PP

  == domain 5  score: -0.5 bits;  conditional E-value: 1.3
      TPR_12  10 aavlrrlgrydeAlellekaleia.rrllGp 39 
                 aa++ +++r   A++  ++a ++a  r++G+
  KOO22160.1 425 AAAEEWRQRALAAEAAWQAAAAVApMRTYGG 455
                 7788889999999999999999998888887 PP

  == domain 6  score: 42.1 bits;  conditional E-value: 6.7e-14
      TPR_12   5 alnnlaavlrrlgrydeAlellekaleiarrllGpdhpltattlrnLgrlyralgryeeAlelleealaiae 76 
                 a+ +++++ ++++ ydeA++l+++al++ ++l +p  p++  +++nL+ +++++g ++eA++l+  a+ai+e
  KOO22160.1 772 AY-KRGMAAYKAQSYDEAEALFREALQLKQSL-DPGDPQLGVVYNNLAATLEKRGLPREAEALYLTAIAICE 841
                 45.899***********************887.7999*********************************98 PP

>> TPR_10  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.2       5.8   6.9e+03       2      21 ..     150     169 ..     149     170 .. 0.87
   2 ?   -2.7   0.7       5.1   6.1e+03      16      32 ..     248     264 ..     244     269 .. 0.75
   3 ?    0.5   1.9       0.5   5.9e+02      19      34 ..     315     330 ..     311     331 .. 0.90
   4 ?   -1.1   0.4       1.7     2e+03       2      13 ..     346     357 ..     345     369 .. 0.70
   5 ?   -3.1   0.5       7.1   8.5e+03      21      31 ..     378     388 ..     376     389 .. 0.86
   6 !   12.6   0.1   7.9e-05     0.094       9      33 ..     776     800 ..     775     807 .. 0.88
   7 !   32.3   0.1   5.2e-11   6.2e-08       5      41 ..     813     849 ..     811     850 .. 0.97

  Alignments for each domain:
  == domain 1  score: -2.8 bits;  conditional E-value: 5.8
      TPR_10   2 AsslnNLanalrqrgrydeA 21 
                 A +l  ++++l + +++ +A
  KOO22160.1 150 AGALEAIGVLLADANERGGA 169
                 7899999******9999887 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 5.1
      TPR_10  16 grydeAealleealair 32 
                  r  +Aeal+ +a ++ 
  KOO22160.1 248 ERTRAAEALAAHAAEAS 264
                 57788999999998876 PP

  == domain 3  score: 0.5 bits;  conditional E-value: 0.5
      TPR_10  19 deAealleealairrr 34 
                 +eA +++e ala+ +r
  KOO22160.1 315 AEAAKIAEAALALKQR 330
                 79**********9887 PP

  == domain 4  score: -1.1 bits;  conditional E-value: 1.7
      TPR_10   2 AsslnNLanalr 13 
                 A+++n L++a  
  KOO22160.1 346 AAARNELGCAAA 357
                 788888888754 PP

  == domain 5  score: -3.1 bits;  conditional E-value: 7.1
      TPR_10  21 Aealleealai 31 
                 Aea +e+a+a+
  KOO22160.1 378 AEAAMEKAYAA 388
                 999*****985 PP

  == domain 6  score: 12.6 bits;  conditional E-value: 7.9e-05
      TPR_10   9 analrqrgrydeAealleealairr 33 
                 ++a ++ + ydeAeal++eal++ +
  KOO22160.1 776 GMAAYKAQSYDEAEALFREALQLKQ 800
                 788999999*************965 PP

  == domain 7  score: 32.3 bits;  conditional E-value: 5.2e-11
      TPR_10   5 lnNLanalrqrgrydeAealleealairrrllGpdHP 41 
                 +nNLa++l +rg   eAeal+  a+ai++r l p+HP
  KOO22160.1 813 YNNLAATLEKRGLPREAEALYLTAIAICERRLPPNHP 849
                 9***********************************9 PP

>> Ank  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.5   0.0     0.091   1.1e+02       9      29 ..      15      36 ..       8      38 .. 0.83
   2 !   18.8   1.1   1.3e-06    0.0016       1      29 [.      40      69 ..      40      73 .. 0.91
   3 !    8.5   0.3    0.0024       2.9       1      31 [.      73     104 ..      73     105 .. 0.78
   4 !   12.8   0.2   0.00011      0.13       1      31 [.     106     137 ..     106     138 .. 0.92
   5 ?    3.4   0.2       0.1   1.2e+02       2      25 ..     140     163 ..     139     180 .. 0.84

  Alignments for each domain:
  == domain 1  score: 3.5 bits;  conditional E-value: 0.091
                HHHHTTHHHHHHHH.TTTSTTC CS
         Ank  9 AatngkkriiklLL.hGAnlna 29
                Aa  g+ + ++lL+  GA++n 
  KOO22160.1 15 AAEAGDSERLQLLIgAGASVNT 36
                677788999*****889**995 PP

  == domain 2  score: 18.8 bits;  conditional E-value: 1.3e-06
                TSBBHHHHHHHHTTHHHHHHHH.TTTSTTC CS
         Ank  1 dGnTPLHlAatngkkriiklLL.hGAnlna 29
                dG T+L lAa +g++++++lLL h A++++
  KOO22160.1 40 DGSTALLLAALGGHTSVLQLLLtHDADVTI 69
                8*********************99***964 PP

  == domain 3  score: 8.5 bits;  conditional E-value: 0.0024
                 TSBBHHHHHH...HHTTHHHHHHHH.TTTSTTCBT CS
         Ank   1 dGnTPLHlAa...tngkkriiklLL.hGAnlnald 31 
                 +G TP   Aa     g   +i+lL  +GAn++a +
  KOO22160.1  73 NGATPVFAAAavdAVG---CIQLLCaKGANPDAPN 104
                 5777777776566567...***99989*****987 PP

  == domain 4  score: 12.8 bits;  conditional E-value: 0.00011
                 TSBBHHHHHHHHTTHHHHHHHHT.TTSTTCBT CS
         Ank   1 dGnTPLHlAatngkkriiklLLh.GAnlnald 31 
                 +G TPL +Aa+ +++  ++ LL+ GA ++a+d
  KOO22160.1 106 HGVTPLQMAAHKDHAASARVLLQlGAAPTATD 137
                 69********************66*88*9998 PP

  == domain 5  score: 3.4 bits;  conditional E-value: 0.1
                 SBBHHHHHHHHTTHHHHHHHHTTT CS
         Ank   2 GnTPLHlAatngkkriiklLLhGA 25 
                 Gn +LH Aa+ g ++ i  LL  A
  KOO22160.1 140 GNAALHKAARAGALEAIGVLLADA 163
                 889******999999999999333 PP

>> TPR_1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   1.5   4.5e-06    0.0054       5      32 ..     773     800 ..     772     802 .. 0.94
   2 !   13.7   0.1   3.4e-05      0.04       3      31 ..     812     840 ..     811     842 .. 0.94

  Alignments for each domain:
  == domain 1  score: 16.5 bits;  conditional E-value: 4.5e-06
                 HHHHHHHHHTT-HHHHHHHHHHHHHHST CS
       TPR_1   5 ynlGnayfklgkydeAleyyekALelnP 32 
                 y +G+a +k + ydeA++ +++AL+l  
  KOO22160.1 773 YKRGMAAYKAQSYDEAEALFREALQLKQ 800
                 789**********************986 PP

  == domain 2  score: 13.7 bits;  conditional E-value: 3.4e-05
                 HHHHHHHHHHHTT-HHHHHHHHHHHHHHS CS
       TPR_1   3 alynlGnayfklgkydeAleyyekALeln 31 
                 +++nl++++ k g + eA++ y  A+ ++
  KOO22160.1 812 VYNNLAATLEKRGLPREAEALYLTAIAIC 840
                 7*************************986 PP

>> PDZ_6  PDZ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.4   0.2   6.6e-08   7.9e-05       7      48 ..     660     697 ..     653     702 .. 0.80

  Alignments for each domain:
  == domain 1  score: 22.4 bits;  conditional E-value: 6.6e-08
       PDZ_6   7 pgsPAdrAGlrvGDiilsvNGqpveglsladvaallrgsage 48 
                 +g  Ad   +  GD+i+s++G+ +  ++++++a+ lr+s+g+
  KOO22160.1 660 EGPMADL--VARGDRIISIDGVLI--ETPNQAAEVLRQSEGH 697
                 4444444..79*************..***********88775 PP

>> TPR_2  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   2.7       3.4   4.1e+03       8      29 ..     294     315 ..     292     320 .. 0.84
   2 ?   -2.6   0.8       6.9   8.2e+03       2      18 ..     428     444 ..     427     449 .. 0.54
   3 !   17.9   3.3     2e-06    0.0024       5      30 ..     773     798 ..     769     801 .. 0.92
   4 !   11.0   0.1   0.00032      0.39       3      32 ..     812     841 ..     811     843 .. 0.94

  Alignments for each domain:
  == domain 1  score: -1.6 bits;  conditional E-value: 3.4
       TPR_2   8 GlayyklgdyeeAleafekAle 29 
                 ++a+++  ++eeA++ +ekA +
  KOO22160.1 294 AEAHEAHAKLEEAHARLEKAQA 315
                 6788899999999999999965 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 6.9
       TPR_2   2 ealynlGlayyklgdye 18 
                 e + +++la++++ + +
  KOO22160.1 428 EEWRQRALAAEAAWQAA 444
                 56666666666554443 PP

  == domain 3  score: 17.9 bits;  conditional E-value: 2e-06
       TPR_2   5 ynlGlayyklgdyeeAleafekAlel 30 
                 y +G+a+yk++ y+eA+++f++Al+l
  KOO22160.1 773 YKRGMAAYKAQSYDEAEALFREALQL 798
                 99***********************9 PP

  == domain 4  score: 11.0 bits;  conditional E-value: 0.00032
       TPR_2   3 alynlGlayyklgdyeeAleafekAleldP 32 
                 +++nl+  ++k+g + eA++++  A+++++
  KOO22160.1 812 VYNNLAATLEKRGLPREAEALYLTAIAICE 841
                 69************************9975 PP

>> PDZ  PDZ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.1   6.8e-06    0.0081      23      81 ..     632     702 ..     611     703 .. 0.74

  Alignments for each domain:
  == domain 1  score: 16.5 bits;  conditional E-value: 6.8e-06
                 S...............SSSSEEEEEECTTSHHHHHTSSTTEEEEEETTEETTTSHHHHHHHHHHTTTSEEEEEE CS
         PDZ  23 r...............gdkgifvsevlpggaaeadglkvGDkIlsvNgvdvenvsheeavqaikgskgkvtLti 81 
                 r               +  g++v  v++ g+ +   +  GD+I+s++gv +e+    +a++++++s g+v++ +
  KOO22160.1 632 RargvtglptkglrarAIVGAIVEMVVAEGPMADL-VARGDRIISIDGVLIETP--NQAAEVLRQSEGHVRIGV 702
                 34444444444444557899*********666666.6**************976..889999999999988776 PP

>> TPR_17  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.0   8.4e-05       0.1       9      33 ..     806     830 ..     792     831 .. 0.91

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 8.4e-05
      TPR_17   9 dPnnadaynnLAelllknGdlmtAr 33 
                 dP   ++ynnLA +l+k+G +++A+
  KOO22160.1 806 DPQLGVVYNNLAATLEKRGLPREAE 830
                 7888***************999998 PP

>> PI3K_P85_iSH2  Phosphatidylinositol 3-kinase regulatory subunit P85 inter-SH2 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   1.3   0.00037      0.44      67     114 ..     300     348 ..     278     354 .. 0.78
   2 ?    0.4   0.0      0.37   4.5e+02      55      74 ..     783     802 ..     777     863 .. 0.77

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.00037
  PI3K_P85_iSH2  67 qiklqekfsk.eaqehEieklqenleqlksrlkelhsskekLeedlkqq 114
                    + kl e   + e  ++E  k+ e    lk+r +el+ ++e+L ++l + 
     KOO22160.1 300 HAKLEEAHARlEKAQAEAAKIAEAALALKQRRDELELEREQLADELAAA 348
                    3444443322144699***************************999765 PP

  == domain 2  score: 0.4 bits;  conditional E-value: 0.37
  PI3K_P85_iSH2  55 eaFneaikmFeeqiklqekf 74 
                    + + ea+ +F+e ++l+ ++
     KOO22160.1 783 QSYDEAEALFREALQLKQSL 802
                    6899********99998876 PP

>> TPR_7  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.9       6.6   7.9e+03      16      32 ..     315     331 ..     301     336 .. 0.76
   2 ?    3.9   0.1     0.056        66      15      31 ..     785     801 ..     779     807 .. 0.82
   3 ?   10.5   0.0   0.00044      0.52       2      31 ..     813     842 ..     812     847 .. 0.90

  Alignments for each domain:
  == domain 1  score: -2.6 bits;  conditional E-value: 6.6
       TPR_7  16 eeAielyeqsLaltkdp 32 
                 +eA+++ e++Lal  + 
  KOO22160.1 315 AEAAKIAEAALALKQRR 331
                 57888889988887554 PP

  == domain 2  score: 3.9 bits;  conditional E-value: 0.056
       TPR_7  15 yeeAielyeqsLaltkd 31 
                 y+eA+ l++++L+l  +
  KOO22160.1 785 YDEAEALFREALQLKQS 801
                 9*********9998844 PP

  == domain 3  score: 10.5 bits;  conditional E-value: 0.00044
       TPR_7   2 LlnLarlysrlGdyeeAielyeqsLaltkd 31 
                 ++nLa + +++G  +eA+ ly  ++a++++
  KOO22160.1 813 YNNLAATLEKRGLPREAEALYLTAIAICER 842
                 9**********************9998876 PP

>> PDZ_2  PDZ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0    0.0003      0.36      15      56 ..     651     691 ..     621     698 .. 0.79

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.0003
                 -EEEEEE-TTSGGGGT.--TT-EEEEETTB--SSHHHHHHHH CS
       PDZ_2  15 gvlvvsVkeggPaakaglkagDvilkvdgkkvksledlisll 56 
                 g++v  V  +gP a+  ++ gD+i+++dg+ +++  +  + l
  KOO22160.1 651 GAIVEMVVAEGPMADL-VARGDRIISIDGVLIETPNQAAEVL 691
                 778888******7766.**************98766655554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (888 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1453  (0.0810419); expected 358.6 (0.02)
Passed bias filter:                      482  (0.0268838); expected 358.6 (0.02)
Passed Vit filter:                        98  (0.005466); expected 17.9 (0.001)
Passed Fwd filter:                        35  (0.00195214); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              15  [number of targets reported over threshold]
# CPU time: 0.93u 0.29s 00:00:01.22 Elapsed: 00:00:00.48
# Mc/sec: 5525.20
//
Query:       KOO22161.1  [L=384]
Description: hypothetical protein Ctob_001128 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
  ------ inclusion threshold ------
       0.13   12.6   6.1       0.34   11.2   5.6    2.0  1  DUF4061        Domain of unknown function (DUF4061)
       0.44   10.5  20.7       0.56   10.1  20.7    1.3  1  TFIIA          Transcription factor IIA, alpha/beta subunit
        1.5    8.8  14.7        2.2    8.3  14.7    1.3  1  Asp-B-Hydro_N  Aspartyl beta-hydroxylase N-terminal region


Domain annotation for each model (and alignments):
>> DUF4061  Domain of unknown function (DUF4061)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   5.6   5.7e-05      0.34      23      67 ..      94     138 ..      89     159 .. 0.79

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 5.7e-05
     DUF4061  23 kafGkdcsleqleeiReqQekLarlhfeldaeeeelaekeedalr 67 
                 +a+ k +  eq+++iR q e+++  + el++e+  +a+ +  a++
  KOO22161.1  94 RAVTKVLHNEQMSQIRAQKEQMSLIQKELQKEQMAAAQARAVAAE 138
                 788899999**********************99988866655444 PP

>> TFIIA  Transcription factor IIA, alpha/beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1  20.7   9.5e-05      0.56     147     319 ..      14     186 ..       2     312 .. 0.45

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 9.5e-05
       TFIIA 147 qasgaqqiaaqplqqvvqqsqgsaaqssvaalqaqsqqaqalaepqqqlekqqqqqqqqqqqqqqqqvqqqqqeesqqaqqasqe.qvagsqvessqtd 244
                 q+++a++  ++ lq++v  +q+sa++++ aa +a+  + q++a +  + +   +++   ++q+++qq+  ++ ++ ++ + a++  +v+ + ++++q +
  KOO22161.1  14 QKQVAAAQHSALLQKQVAAAQASAIAAVRAAAAAS-LKEQVAAAQARA-T---AEVSAATVQLHRQQALVDKARNAAEVRAAEEArAVT-KVLHNEQMS 106
                 33333333333444443333444443333333333.111111111111.1...111112222222222211111111111111111111.122222222 PP

       TFIIA 245 gaedaleeespvlegelsaeeeagaqkeelsreeidrireealkakelekeskkkkraeessla........dlseilqlDGa 319
                 +   a++e+ ++++ el++e+ a+aq + + +e++ +    +l++++ ++e+++++++e+++++        ++ e +     
  KOO22161.1 107 QIR-AQKEQMSLIQKELQKEQMAAAQARAVAAERAAAA--ASLQMQVEAAEERARAAEERAAAEegaaqeraAAAEHPESNAS 186
                 222.1111111222222222222222222222222211..1111111111111111111100000111111111122222222 PP

>> Asp-B-Hydro_N  Aspartyl beta-hydroxylase N-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.3  14.7   0.00036       2.2      68     195 ..      50     178 ..      13     243 .. 0.61

  Alignments for each domain:
  == domain 1  score: 8.3 bits;  conditional E-value: 0.00036
  Asp-B-Hydro_N  68 kekstsessvpe..eeaevvaeeeeqlaeekekqkveeevkEqlkkvkeeivvkeeeeegieeepqleeekkllkedsderqeeleagkvkeevEe 161
                    ke+ +  ++ +   + a +v+ + +q+ ++k ++++e  + E+ + v  ++ ++e+  + +++++q    +k l++++  ++++ ++ +   ++ +
     KOO22161.1  50 KEQVAAAQARATaeVSAATVQLHRQQALVDKARNAAEVRAAEEARAV-TKVLHNEQMSQIRAQKEQMSLIQKELQKEQMAAAQARAVAAERAAAAA 144
                    44444333322221445555556666777777777777777777777.566666655555555555554444444444444444444333333444 PP

  Asp-B-Hydro_N 162 slkveetvseeakkdmkekaseeenekskepvee 195
                    sl++   + ee ++ ++e+a+ ee + ++ +   
     KOO22161.1 145 SLQMQVEAAEERARAAEERAAAEEGAAQERAAAA 178
                    4444333334444444444444443333333221 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (384 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2828  (0.157733); expected 358.6 (0.02)
Passed bias filter:                      546  (0.0304535); expected 358.6 (0.02)
Passed Vit filter:                        93  (0.00518713); expected 17.9 (0.001)
Passed Fwd filter:                        22  (0.00122706); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.75u 0.31s 00:00:01.06 Elapsed: 00:00:00.45
# Mc/sec: 2551.05
//
Query:       KOO22162.1  [L=399]
Description: hypothetical protein Ctob_001140 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (399 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       321  (0.017904); expected 358.6 (0.02)
Passed bias filter:                      200  (0.0111551); expected 358.6 (0.02)
Passed Vit filter:                         9  (0.00050198); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.44u 0.22s 00:00:00.66 Elapsed: 00:00:00.37
# Mc/sec: 3225.74
//
Query:       KOO22163.1  [L=456]
Description: neurotransmitter-gated ion-channel ligand-binding protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.4e-08   33.7   0.0    2.9e-07   30.2   0.0    2.5  1  Neur_chan_LBD   Neurotransmitter-gated ion-channel ligand bin
     0.0093   16.0   4.4      0.014   15.5   4.4    1.2  1  Neur_chan_memb  Neurotransmitter-gated ion-channel transmembr


Domain annotation for each model (and alignments):
>> Neur_chan_LBD  Neurotransmitter-gated ion-channel ligand binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.2   0.0   3.2e-11   2.9e-07      24     139 ..       5     111 ..       1     201 [. 0.82

  Alignments for each domain:
  == domain 1  score: 30.2 bits;  conditional E-value: 3.2e-11
                    S-EEEEEEEEEEEEEEEETTTTEEEEEEEEEEEEE-STT---GGGTTSSSEEEEETTTS----EEETTCSCCESSSSSS-EEEEEET.TSEEEEEE CS
  Neur_chan_LBD  24 kpvkVkvelslsqiidvdeknqvlttnvwlkqqWtDerLkwdpedyggieslrlpsekiWlPdivlynkadeehevteknvnlrvss.dGtvlwsp 118
                     pv+V+v++   +++ +d +nq ++++++l+ +W+D+rL             ++p +  W P+ v   +a +  ++ +++  + v+s +G+vlw  
     KOO22163.1   5 GPVVVEVKFGFIELSAIDTINQSFRCRFFLDLTWEDPRLIGA---------SSVP-DGTWFPKGVYIINAHGALDIAAYSKPILVDSaTGRVLWAQ 90 
                    589************************************654.........3444.567****999999****************8779******* PP

                    EEEEEEE-----SSTTT-EEE CS
  Neur_chan_LBD 119 pailkssCsidvkyFPfDeqn 139
                     ++  ++ ++++  FPfD+  
     KOO22163.1  91 DIQGAITNQMSLAAFPFDTDV 111
                    ******************865 PP

>> Neur_chan_memb  Neurotransmitter-gated ion-channel transmembrane region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   4.4   1.5e-06     0.014      18      70 ..     225     277 ..     208     292 .. 0.83

  Alignments for each domain:
  == domain 1  score: 15.5 bits;  conditional E-value: 1.5e-06
                     HHHCT.TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-STTHHHHHHHHHHHH CS
  Neur_chan_memb  18 Lpsda.gekvtLgIsvlLslTvfllliteilPktSlvipLigkYLlftmvfvtl 70 
                      +++  + +  +++++ L+ + +l+++++ lPktS+ ++++  +++ t+v+ ++
      KOO22163.1 225 YEAEDlANRNGISVTMFLATSALLFVVAALLPKTSYLTAIDR-FVVQTLVIQFA 277
                     455555889999*****************************9.**999999886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (456 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       554  (0.0308997); expected 358.6 (0.02)
Passed bias filter:                      337  (0.0187964); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.46u 0.25s 00:00:00.71 Elapsed: 00:00:00.38
# Mc/sec: 3627.13
//
Query:       KOO22164.1  [L=532]
Description: poly(ADP-ribose) glycohydrolase-like protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.6e-76  255.8   0.0    8.7e-76  255.4   0.0    1.1  1  PARG_cat  Poly (ADP-ribose) glycohydrolase (PARG)


Domain annotation for each model (and alignments):
>> PARG_cat  Poly (ADP-ribose) glycohydrolase (PARG)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  255.4   0.0   4.8e-80   8.7e-76     113     336 ..      92     328 ..      68     329 .. 0.93

  Alignments for each domain:
  == domain 1  score: 255.4 bits;  conditional E-value: 4.8e-80
    PARG_cat 113 e.gvvsferkvlsk..kekiedwskse.kklskveveseglIedqskgalqvdFAnkyiGGgvlsrGcvQEeirflinPElivsmLfteklednealvi 207
                 +  ++sfer vl++  ++  ++w+    ++l++v+  ++g+Ied  + +lq dFAn+ iGGgvl++GcvQEeirfl++PElivs+ f e+led+eal++
  KOO22164.1  92 SpRLISFERLVLDTseTQLESFWRGAVhVPLCPVHARADGTIEDADRSHLQLDFANRSIGGGVLRNGCVQEEIRFLLSPELIVSRAFAESLEDHEALLL 190
                 34799****99888654555677755449********************************************************************** PP

    PARG_cat 208 vgaerfssytGYassfrfagdyvdktprdslgrrkteivaiDAlefkkeekekqykkekilRelnKAyvgFksqekeke.........eeekvgiaTGn 297
                  g+erfssy+GYa++f++a+ y    + d       ++vaiDA+++++++ ++q+++  i+RelnKAyvgF++ ++                 +i+TGn
  KOO22164.1 191 EGVERFSSYRGYARTFEYADPYAGPYEDDPAA-PGPHLVAIDATQYERSQVMRQFSSGAIERELNKAYVGFLGARDGALdgepigavaAAPLPPIVTGN 288
                 **********************9988888888.8999***************************************99999*****999999******* PP

    PARG_cat 298 WGCGaFgGdpeLKaliQllAasqagre.lvyytfgdkela 336
                 WGCGaFgGd +LKa+iQ++Aas+agr  ++y+tfgd++la
  KOO22164.1 289 WGCGAFGGDLQLKAMIQWMAASLAGRVcVHYLTFGDERLA 328
                 ***************************9*********986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (532 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1019  (0.0568353); expected 358.6 (0.02)
Passed bias filter:                      465  (0.0259356); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.55u 0.23s 00:00:00.78 Elapsed: 00:00:00.37
# Mc/sec: 4302.51
//
Query:       KOO22165.1  [L=310]
Description: mitochondrial 2-oxoglutarate malate carrier [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.6e-45  151.8   5.4    6.3e-16   58.1   0.1    3.0  3  Mito_carr  Mitochondrial carrier protein


Domain annotation for each model (and alignments):
>> Mito_carr  Mitochondrial carrier protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.5   0.2   1.4e-16   2.6e-12       9      96 ..      25     110 ..      18     111 .. 0.95
   2 !   58.1   0.1   3.5e-20   6.3e-16       3      94 ..     113     206 ..     111     209 .. 0.92
   3 !   49.1   0.2   2.2e-17     4e-13       7      95 ..     215     304 ..     211     306 .. 0.92

  Alignments for each domain:
  == domain 1  score: 46.5 bits;  conditional E-value: 1.4e-16
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSTTTSCSSHHHHHHHHHHHHHHHGGGTTHHHHHHHHHHHHHHHHHHHHHHHHHHCTT CS
   Mito_carr   9 llaGglagavatlvttPldvvKtrlqtqkksskksksaaildvlkkiykeeGlrglyrGllpnllrvapasalkfvlyetlkrlllkk 96 
                 + ++gl+g++++++++P+ ++ +r+ +++ s++  ks  +l   + i+k+eG+ +ly Gl++ +lr++ ++  + +l+et++++l k+
  KOO22165.1  25 FGTSGLGGVIGWIFIHPFNTLAIRMNLAAMSQAPPKS--TLGFASGIIKQEGFGSLYAGLGAGCLRQVFYATSRYGLFETFRDILAKY 110
                 56789***************************99887..9********************************************9986 PP

  == domain 2  score: 58.1 bits;  conditional E-value: 3.5e-20
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSTTTSCSS..HHHHHHHHHHHHHHHGGGTTHHHHHHHHHHHHHHHHHHHHHHHHHHC CS
   Mito_carr   3 lsvlkellaGglagavatlvttPldvvKtrlqtqkksskksksaa..ildvlkkiykeeGlrglyrGllpnllrvapasalkfvlyetlkrlll 94 
                 + ++++++++++ag +a+++ +P++v  +r+ +++    ++++++  ++d++ +i +e+G++++yrG  p ++r ++  + ++++y+++k+l+ 
  KOO22165.1 113 TDFAQRFVTASVAGGCAAIISCPIEVCLVRMSNDAALPVQQRRGYssVFDAIVRIAREDGFSAFYRGSQPFVTRAMVVGGTQVATYDQFKQLYA 206
                 57899****************************99987666655567********************************************985 PP

  == domain 3  score: 49.1 bits;  conditional E-value: 2.2e-17
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSTTTSCSS.HHHHHHHHHHHHHHHGGGTTHHHHHHHHHHHHHHHHHHHHHHHHHHCT CS
   Mito_carr   7 kellaGglagavatlvttPldvvKtrlqtqkksskksksaa.ildvlkkiykeeGlrglyrGllpnllrvapasalkfvlyetlkrlllk 95 
                 +++ +++ ag++ +++t+Pl+++K r+  qk  ++    ++ +++++++i ++eG+++l+ G++p   r    ++++f++ e l+r++ k
  KOO22165.1 215 NTVSSSMSAGLIYSVITMPLETAKNRMAFQKADAAGMLPYKsTVQTVSTIARTEGVLALWNGFWPYYGRCGGHTVAMFLAVEELRRIYVK 304
                 678899*************************99887665557*******************************************99876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (310 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       406  (0.0226449); expected 358.6 (0.02)
Passed bias filter:                      339  (0.0189079); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.21s 00:00:00.63 Elapsed: 00:00:00.35
# Mc/sec: 2634.80
//
Query:       KOO22166.1  [L=477]
Description: tubby-related protein 2-like protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    7.2e-28   98.0   0.0      1e-27   97.5   0.0    1.1  1  Tub       Tub family


Domain annotation for each model (and alignments):
>> Tub  Tub family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   97.5   0.0   5.6e-32     1e-27      23     240 ..     221     469 ..     210     470 .. 0.82

  Alignments for each domain:
  == domain 1  score: 97.5 bits;  conditional E-value: 5.6e-32
         Tub  23 tstYhLylel....ekgkfLlaarkrrrs..ttseYlisldaedl...........srdsesyiGklrs.nflgtkftlydkgvspkksaakesakvkk 103
                 +++Y+ yl+l    +++  +  a+++r+   ++s+Y+i l ++d              +   y Gk+rs n++g +f+ yd+gv+ ++ ++k     + 
  KOO22166.1 221 SNNYRCYLRLgsrsDRRICIFEASRTRKGslKNSQYVIKLPRDDPrlvdveenlgyLPEDLFYCGKVRSyNLSGANFVAYDDGVKVETPDEKP---PPG 316
                 67888898888888888889999999887689********99954444444444444444668********************9999888766...789 PP

         Tub 104 ekvrkelaavvYelnvlgtrgprkmkvlipsiekkvevspedeeeslqe..................etkkeeesdllvlknksprwneqlqayvLnFr 184
                 +++r+++ a +++++  + r+p +m+vl+p++e  ++  ++++e+ + +                  ++++     +  lk  +prwn + q + L  +
  KOO22166.1 317 KRLRRQMVAMCFNKSSSR-RVPMTMRVLVPAVE-VADAPDQPSERGVPSlpqtcvelletlqalpqgAEEQTPPAGTRLLKLVPPRWNADEQMFQLFCE 413
                 999**********98877.*************5.3333333333333335555666666677777786666666788899999**************** PP

         Tub 185 gRvtvaSvKNfqLvaaedeekvilqfGkvgkdvFtmDyryPlsalqAFaiclssfd 240
                 gR+ + S KN+qL ++   ++ +lq Gk+++++F++D +  ls++qAF+ +l+ fd
  KOO22166.1 414 GRACCMSNKNVQLADTLVPNEAVLQVGKLNSQMFNVDLQGCLSPFQAFCSALAVFD 469
                 *******************************************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (477 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       346  (0.0192983); expected 358.6 (0.02)
Passed bias filter:                      269  (0.0150036); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.21s 00:00:00.67 Elapsed: 00:00:00.36
# Mc/sec: 3967.62
//
Query:       KOO22167.1  [L=179]
Description: hypothetical protein Ctob_001135, partial [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (179 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       180  (0.0100396); expected 358.6 (0.02)
Passed bias filter:                      177  (0.00987227); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.39u 0.25s 00:00:00.64 Elapsed: 00:00:00.41
# Mc/sec: 1304.64
//
Query:       KOO22168.1  [L=338]
Description: presenilin family protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.8e-94  316.2  22.1      1e-64  218.8   6.1    2.0  2  Presenilin  Presenilin


Domain annotation for each model (and alignments):
>> Presenilin  Presenilin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  218.8   6.1   5.7e-69     1e-64       5     219 ..      32     251 ..      30     253 .. 0.94
   2 !  105.0   7.5     2e-34   3.7e-30     321     397 ..     252     327 ..     249     328 .. 0.96

  Alignments for each domain:
  == domain 1  score: 218.8 bits;  conditional E-value: 5.7e-69
  Presenilin   5 kqvikllvpVslcmllvvaliksvefysseekd..easlvytpfeeesdstgqkllnsllnalililvivvvtfllvlLykyrcykvikgwlilsslll 101
                  qv++ll+pVs++m+lvv+l++ ++  s+      +  +vy+++  ++ds g+ l++ +lnal+++  +++vt  l+lLyk++cy++i++wl++s+ +l
  KOO22168.1  32 AQVLSLLKPVSITMALVVFLVHEMSAASQGIAGgfSELMVYQES--ATDSPGTILGGVVLNALVVVFTLFLVTSGLLLLYKCHCYRIIYAWLFFSVSTL 128
                 689*********************98886555577555888877..9**************************************************** PP

  Presenilin 102 LflvsglllaevlkaynipldyitlllllwnfgvvGviaifw.......kgplllqqaYlilisalmAlvfikylpewTtwvlLvvisiyDlvAVLcPk 193
                 Lf+++g++l e+l  +++p+d  t+++++ nf++vG + +fw         pl lqqaYli+isal+A+  ++ lpew+tw lL +++++Dl AVL+P+
  KOO22168.1 129 LFIFGGYVLRELLFMHDVPMDSPTFFVCMYNFAAVGTLLVFWteygcgpTPPLQLQQAYLIIISALLAWSATR-LPEWSTWGLLGAVALWDLYAVLAPR 226
                 ******************************************8765444459*********************.************************* PP

  Presenilin 194 GPLrlLvelaqerneeifpaLiYsat 219
                 GPL++Lve a+ r ++i p L+Y+ +
  KOO22168.1 227 GPLKMLVEEAERRGDPI-PGLVYQGN 251
                 *****************.*****875 PP

  == domain 2  score: 105.0 bits;  conditional E-value: 2e-34
  Presenilin 321 gvkLGLGDFiFYSvLvgkAalsgdlntvvacfvailiGLclTLllLaifkkalPALPisialGlvfyfltrllvepf 397
                  +kLGLGDF+FYSvLvg+A++ +   +++ac+vai++GLc+TL lL i++k lPALPisia G+ +yflt++++ p+
  KOO22168.1 252 DIKLGLGDFVFYSVLVGRASM-HSSAALLACAVAIIAGLCATLALLPILQKVLPALPISIAGGIGVYFLTSATLAPM 327
                 69*******************.999***********************************************99986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (338 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       860  (0.047967); expected 358.6 (0.02)
Passed bias filter:                      361  (0.020135); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.50u 0.28s 00:00:00.78 Elapsed: 00:00:00.44
# Mc/sec: 2333.63
//
Query:       KOO22169.1  [L=1491]
Description: hypothetical protein Ctob_001137 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1491 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       338  (0.0188521); expected 358.6 (0.02)
Passed bias filter:                      228  (0.0127168); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.71u 0.30s 00:00:01.01 Elapsed: 00:00:00.43
# Mc/sec: 10415.15
//
Query:       KOO22170.1  [L=199]
Description: hypothetical protein Ctob_001136 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.8e-05   23.8   0.0    7.5e-05   23.2   0.0    1.2  1  PH        PH domain
     0.0061   16.1   0.0       0.01   15.4   0.0    1.4  1  GSHPx     Glutathione peroxidase


Domain annotation for each model (and alignments):
>> PH  PH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.2   0.0   8.3e-09   7.5e-05       5     101 ..      59     149 ..      58     151 .. 0.86

  Alignments for each domain:
  == domain 1  score: 23.2 bits;  conditional E-value: 8.3e-09
                 EEEEEETSSSSC.SEEEEEEEEETTEEEEESSTTCTTESSEEEEEESTTEEEEEEEC.TTSSSSTSEEEEEESTSSSTEEEEEEESSHHHHHHHHHHHH CS
          PH   5 GwLlkkgsgkkk.swkkrwfvLkdsellyykndksekdkepkgsislsncevvevva.tedpkrkfcfelriverngsrtyllqasseeerkeWikaiq 101
                 G+Ll + +g  +  wk+ ++v+ ++ +++++++   ++++  + +  s+ce++ v++ +e +   +cf+l+++    + +  ++a ++  +  W++a+q
  KOO22170.1  59 GYLLLDVKGCLGrFWKQVYAVIVKGAVYIFESP---TAERTLRLLAASDCECE-VGErEECKAGVYCFRLKHA----DGSAAFCAFNSKAMLLWLQALQ 149
                 56666666666667*******************...****************8.5554778889999999888....5699*****************8 PP

>> GSHPx  Glutathione peroxidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.0   1.1e-06      0.01       2      32 ..     169     199 .]     168     199 .] 0.93

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 1.1e-06
                 GGBEEEBTTSSEEEGGGGTTSEEEEEEEESS CS
       GSHPx   2 yelsakdidgekvkleklrgkvvlivnvask 32 
                 +el a+ + ge+++l++++g v+l+vn ask
  KOO22170.1 169 FELRATLLTGEEIDLDRYQGCVCLVVNAASK 199
                 78889999*********************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (199 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       362  (0.0201908); expected 358.6 (0.02)
Passed bias filter:                      287  (0.0160076); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.40u 0.23s 00:00:00.63 Elapsed: 00:00:00.39
# Mc/sec: 1540.54
//
Query:       KOO22171.1  [L=150]
Description: hypothetical protein Ctob_001139 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (150 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       282  (0.0157287); expected 358.6 (0.02)
Passed bias filter:                      248  (0.0138323); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.26s 00:00:00.60 Elapsed: 00:00:00.38
# Mc/sec: 1176.75
//
Query:       KOO22172.1  [L=375]
Description: mitochondrial carrier protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.7e-19   68.5   6.9    2.4e-05   24.2   0.1    3.5  3  Mito_carr  Mitochondrial carrier protein


Domain annotation for each model (and alignments):
>> Mito_carr  Mitochondrial carrier protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.5   0.4   2.2e-09   3.9e-05       6      86 ..     102     178 ..      99     189 .. 0.78
   2 !   23.1   0.1     3e-09   5.3e-05       4      93 ..     191     272 ..     188     275 .. 0.87
   3 !   24.2   0.1   1.3e-09   2.4e-05       3      95 ..     281     368 ..     280     370 .. 0.91

  Alignments for each domain:
  == domain 1  score: 23.5 bits;  conditional E-value: 2.2e-09
                 HHHHHHHHHHHHHHHHH.HHHHHHHHHHHHHCCCSSTTTSCSSHHHHHHHHHHHHHHHGGGTTHHHHHHHHHHHHHHHHHHH CS
   Mito_carr   6 lkellaGglagavatlv.ttPldvvKtrlqtqkksskksksaaildvlkkiykeeGlrglyrGllpnllrvapasalkfvly 86 
                 +k+ l Gg++g +a++v +  l  ++t +  q +++ +     ++d+l  +y e Glr +yrG++ +l+++  +++   +++
  KOO22172.1 102 AKKALGGGISGFFAGIVqVLLLMWLRTTMNYQYRNGGS-----TRDALAALYAEGGLRRFYRGVSFALIQTPLSRFGDTAAN 178
                 56677777777777776344466789999999999998.....9************************99877776665555 PP

  == domain 2  score: 23.1 bits;  conditional E-value: 3e-09
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSTTTSCSSHHHHHHHHHHHHHHHGGGTTHHHHHHHHHHHHHHHHHHHHHHHHHH CS
   Mito_carr   4 svlkellaGglagavatlvttPldvvKtrlqtqkksskksksaaildvlkkiykeeGlrglyrGllpnllrvapasalkfvlyetlkrll 93 
                 +v  + + +++a+a+  +  tP+d++Kt lq+++ ++         d ++  +keeG   l++G+l+n   +++ +  + +++++l ++l
  KOO22172.1 191 PVGVRTAFASAAAAAWRIGLTPIDTLKTTLQVKGAEGY--------DQVSAKVKEEGPGVLFQGALANAAASFVGNYPWYLTFNSLNEML 272
                 566667788999999999******************75........5678889*******************999999999988888877 PP

  == domain 3  score: 24.2 bits;  conditional E-value: 1.3e-09
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSTTTSCSSHHHHHHHHHHHHHHHGGG.TTHHHHHHHHHHHHHHHHHHHHHHHHHHCT CS
   Mito_carr   3 lsvlkellaGglagavatlvttPldvvKtrlqtqkksskksksaaildvlkkiykeeGlrgly.rGllpnllrvapasalkfvlyetlkrlllk 95 
                 l+++++ + G +a+ v+ ++ + + v+Kt  qt++++ ++      +++ ++i++++G  gl  rGl+ +l+ +a ++al  v+ +   ++l+k
  KOO22172.1 281 LKLARTAVLGIAAAGVSDTISNSIRVLKTVRQTSETTITY------REAAQQILETDGWQGLVgRGLGTRLVTNALQAALFTVVWKLGEEYLTK 368
                 5778999******************************986......789************876****************99998887777766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (375 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       502  (0.0279993); expected 358.6 (0.02)
Passed bias filter:                      316  (0.0176251); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.25s 00:00:00.68 Elapsed: 00:00:00.37
# Mc/sec: 3022.06
//
Query:       KOO22173.1  [L=205]
Description: hypothetical protein Ctob_001133 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0016   17.5   0.3     0.0016   17.4   0.3    1.0  1  DUF812     Protein of unknown function (DUF812)
  ------ inclusion threshold ------
      0.013   15.0   2.3      0.018   14.6   2.3    1.1  1  Apolipo_F  Apolipoprotein F
      0.039   13.0   3.1       0.05   12.7   3.1    1.1  1  Atg14      Vacuolar sorting 38 and autophagy-related subunit 
      0.059   12.9   5.2      0.082   12.5   5.2    1.1  1  HAUS6_N    HAUS augmin-like complex subunit 6 N-terminus
       0.18   11.1   7.4       0.25   10.6   7.4    1.1  1  DUF3450    Protein of unknown function (DUF3450)
        0.4   11.2  10.6       0.56   10.7  10.6    1.2  1  APG6_N     Apg6 coiled-coil region
       0.42    9.2   2.9       0.54    8.8   2.9    1.1  1  DUF3138    Protein of unknown function (DUF3138)
       0.46   11.6   5.3       0.21   12.7   1.0    2.3  2  DUF5320    Family of unknown function (DUF5320)
       0.53   10.8   6.4       0.68   10.4   1.0    2.2  2  DUF4140    N-terminal domain of unknown function (DUF4140)
        1.6    7.9   3.5        2.1    7.5   3.5    1.1  1  TMPIT      TMPIT-like protein
          2    8.7   7.4      0.074   13.3   1.3    1.8  2  DUF3006    Protein of unknown function (DUF3006)
          5    5.5   5.2        6.4    5.2   5.2    1.0  1  FUSC       Fusaric acid resistance protein family
        5.9    6.7   8.2       0.97    9.2   2.8    2.1  2  DivIC      Septum formation initiator


Domain annotation for each model (and alignments):
>> DUF812  Protein of unknown function (DUF812)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.4   0.3   1.1e-06    0.0016     315     384 ..     113     184 ..      38     196 .. 0.80

  Alignments for each domain:
  == domain 1  score: 17.4 bits;  conditional E-value: 1.1e-06
      DUF812 315 a..kkaeteeelkkkreeeleelqeqieeleskieeleeeikklessikqveeeleeekeeneelekevklk 384
                 a  +ka+ e  ++++  e++++l+e+ ++l++++e+l+ e++ +  s++q+e + +++++e+  +e+e ++ 
  KOO22173.1 113 AylAKAKAEAKANAQCREQIKALKEREQALKKQVEALRVELAGCGVSLSQLEAARRAKEQEQHAQEEEREVV 184
                 155677888888999999***********************************9999999999999888765 PP

>> Apolipo_F  Apolipoprotein F
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.6   2.3   1.3e-05     0.018      51     127 ..     116     193 ..     104     202 .. 0.85

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 1.3e-05
   Apolipo_F  51 yklgGkdatetLirelqkleeeegigseesvdalasaLqllarsqgelrRarRsvtlee.CeseqeqvlhevaelLPs 127
                  k  +  ++++  re  k+ +e++   ++ v+al   L   + s ++l+ arR+  +e+  ++e+++v+h+v  +L s
  KOO22173.1 116 AKAKAEAKANAQCREQIKALKEREQALKKQVEALRVELAGCGVSLSQLEAARRAKEQEQhAQEEEREVVHAVDGWLKS 193
                 5556666677777888888999999999****************************99989999999****9999865 PP

>> Atg14  Vacuolar sorting 38 and autophagy-related subunit 14
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   3.1   3.6e-05      0.05      67     132 ..     116     177 ..      93     196 .. 0.75

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 3.6e-05
       Atg14  67 akleelksliadlrerlqelkdklsqlkkeieekkkklaklsdklk....kRrsdleslqneleerrkkq 132
                 ak++   +  a++re+++ lk++ + lkk++e+ + +la++  +l+     Rr++        e+++++q
  KOO22173.1 116 AKAKAEAKANAQCREQIKALKEREQALKKQVEALRVELAGCGVSLSqleaARRAK--------EQEQHAQ 177
                 45666667789999*******************************8555544444........3333222 PP

>> HAUS6_N  HAUS augmin-like complex subunit 6 N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   5.2   5.9e-05     0.082     154     224 ..     109     187 ..      96     190 .. 0.76

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 5.9e-05
     HAUS6_N 154 vslrrflrekaaadrarqkyqenaqllekkerelraeleelqaelkae.......keaakkekkeasedaeee.kikkv 224
                 + ++  l +++a+ +a+++++e+ + l+++e++l+++ e+l  el          ++a++ +++e+  ++ee+ +++ v
  KOO22173.1 109 IDAHAYLAKAKAEAKANAQCREQIKALKEREQALKKQVEALRVELAGCgvslsqlEAARRAKEQEQHAQEEEReVVHAV 187
                 67788999999999**************************88877544999*997444444444444444444466555 PP

>> DUF3450  Protein of unknown function (DUF3450)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   7.4   0.00018      0.25      17      89 ..     110     182 ..     104     189 .. 0.86

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00018
     DUF3450  17 tldqalkeaekavaaaaqsqkkidklddekqellaeyralkeeleslevyneqlerlvasqeqeiasleeqie 89 
                 ++++ l++a++  +a aq  ++i++l++  q l+++++al+ el+   v  +qle+  ++ eqe +  ee+ e
  KOO22173.1 110 DAHAYLAKAKAEAKANAQCREQIKALKEREQALKKQVEALRVELAGCGVSLSQLEAARRAKEQEQHAQEEERE 182
                 567788999999******************************************9988888887766666555 PP

>> APG6_N  Apg6 coiled-coil region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7  10.6   0.00041      0.56      30      99 ..     113     182 ..     101     192 .. 0.81

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00041
      APG6_N  30 eflkklkkekkeeekqdeeleeleeeleklekeeeelleeLkelekereeleaelaaleeelealeeeee 99 
                 ++l+k k+e+k + + +e++++l+e+ ++l+k+ e+l  eL+      ++lea+++a e+e  a eee e
  KOO22173.1 113 AYLAKAKAEAKANAQCREQIKALKEREQALKKQVEALRVELAGCGVSLSQLEAARRAKEQEQHAQEEERE 182
                 7999999998888888888888888888888888888888888888888888888888888777777665 PP

>> DUF3138  Protein of unknown function (DUF3138)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.8   2.9   0.00039      0.54      11      66 ..     116     167 ..     103     188 .. 0.62

  Alignments for each domain:
  == domain 1  score: 8.8 bits;  conditional E-value: 0.00039
     DUF3138  11 alaldglaaaaatadrikalkaqltalqrqvkelraalaaakaaaGgkissqkaaa 66 
                 a a   + a a+  ++ikalk + +al++qv++lr  la      G  +s  +aa 
  KOO22173.1 116 AKAKAEAKANAQCREQIKALKEREQALKKQVEALRVELAG----CGVSLSQLEAAR 167
                 3333333333444789999999999999999999987754....344444444443 PP

>> DUF5320  Family of unknown function (DUF5320)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   1.0   0.00015      0.21      62      96 ..     110     153 ..      42     156 .. 0.74
   2 ?    0.8   0.2      0.79   1.1e+03      63      88 ..     169     194 ..     154     197 .. 0.71

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 0.00015
     DUF5320  62 a.........aaetaeaskeeekelLeeqaeaLeeeleaikkrl 96 
                           a+++a+a+ +e++++L+e+++aL++++ea++ +l
  KOO22173.1 110 DahaylakakAEAKANAQCREQIKALKEREQALKKQVEALRVEL 153
                 0444555555677888889999****************999877 PP

  == domain 2  score: 0.8 bits;  conditional E-value: 0.79
     DUF5320  63 aaetaeaskeeekelLeeqaeaLeee 88 
                 a+e++++++eee+e+  +    L++e
  KOO22173.1 169 AKEQEQHAQEEEREVVHAVDGWLKSE 194
                 56888999999999988888888776 PP

>> DUF4140  N-terminal domain of unknown function (DUF4140)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   1.0   0.00049      0.68      61      95 ..     118     153 ..      89     156 .. 0.63
   2 ?    3.2   0.4     0.088   1.2e+02      67      93 ..     160     186 ..     157     190 .. 0.84

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00049
     DUF4140  61 eaeee.elkalraeleeledelaaledelaaaearl 95 
                  ++e+ + ++ r+++++l+++ +al+++ +a++ +l
  KOO22173.1 118 AKAEAkANAQCREQIKALKEREQALKKQVEALRVEL 153
                 222222477788888888888888888888777655 PP

  == domain 2  score: 3.2 bits;  conditional E-value: 0.088
     DUF4140  67 lkalraeleeledelaaledelaaaea 93 
                 l++l+a+ ++ e+e+ a e+e++++ a
  KOO22173.1 160 LSQLEAARRAKEQEQHAQEEEREVVHA 186
                 678999999999999999999998765 PP

>> TMPIT  TMPIT-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.5   3.5    0.0015       2.1      18      77 ..     111     178 ..      96     196 .. 0.62

  Alignments for each domain:
  == domain 1  score: 7.5 bits;  conditional E-value: 0.0015
       TMPIT  18 akeykqkleelsklqskcskeikkqkkrlkelksslkklkksvk........eeeeeeveelkeelke 77 
                 a+ y +k +  +k + +c+++ik  k+r ++lk++++ l+ ++          e +++++e +++ +e
  KOO22173.1 111 AHAYLAKAKAEAKANAQCREQIKALKEREQALKKQVEALRVELAgcgvslsqLEAARRAKEQEQHAQE 178
                 34588888888899999999999999999999999999988865565655542222222222222222 PP

>> DUF3006  Protein of unknown function (DUF3006)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   1.3   5.4e-05     0.074       5      66 ..      92     153 ..      92     154 .. 0.78
   2 ?   -3.4   0.5       8.4   1.2e+04      48      55 ..     169     176 ..     159     182 .. 0.52

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 5.4e-05
     DUF3006   5 RfEgdlAVleledgetidiprsdLpegakeGdvLeiedd.eieldpeetekrkeriqelldrL 66 
                 RfEgd+A++e+e +e+  i+++   ++ak  +  + +   +i+  +e +++ k+++++l  +L
  KOO22173.1  92 RFEGDVAIIEDE-SEVSSIDAHAYLAKAKAEAKANAQCReQIKALKEREQALKKQVEALRVEL 153
                 9*********99.5677777777777666666666663336***************9987655 PP

  == domain 2  score: -3.4 bits;  conditional E-value: 8.4
     DUF3006  48 dpeetekr 55 
                  +e+++ +
  KOO22173.1 169 AKEQEQHA 176
                 33333333 PP

>> FUSC  Fusaric acid resistance protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.2   5.2    0.0046       6.4     258     338 ..     113     184 ..      98     193 .. 0.58

  Alignments for each domain:
  == domain 1  score: 5.2 bits;  conditional E-value: 0.0046
        FUSC 258 allaelaaleaaaaaealeaalaalrarlralrraleadadtaalllarlaellaelaqllaslraleaaiaaarraerla 338
                 a+la+++a         +++a a++r++++al+++++a   + ++l  +la +  +l ql a+ ra e++  a+++++ ++
  KOO22173.1 113 AYLAKAKA---------EAKANAQCREQIKALKEREQALKKQVEALRVELAGCGVSLSQLEAARRAKEQEQHAQEEEREVV 184
                 44444444.........4555555555555555555555555557777777777777777777777766666544444343 PP

>> DivIC  Septum formation initiator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.2   2.8   0.00071      0.97      27      51 ..     126     150 ..     113     155 .. 0.79
   2 ?    0.1   0.3      0.49   6.8e+02      21      40 ..     162     181 ..     157     194 .. 0.61

  Alignments for each domain:
  == domain 1  score: 9.2 bits;  conditional E-value: 0.00071
                 HHHHHHHHHHHHHHHHHHHHHCC-X CS
       DivIC  27 aalqaelaklkaeneeLeaevkdLk 51 
                 a+  +++++lk+++++L+++v+ L+
  KOO22173.1 126 AQCREQIKALKEREQALKKQVEALR 150
                 5667888888888888888888885 PP

  == domain 2  score: 0.1 bits;  conditional E-value: 0.49
                 HHHHHHHHHHHHHHHHHHHH CS
       DivIC  21 qlkqeiaalqaelaklkaen 40 
                 ql++ + a+++e  ++ +e+
  KOO22173.1 162 QLEAARRAKEQEQHAQEEER 181
                 45555555555555554444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (205 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2070  (0.115455); expected 358.6 (0.02)
Passed bias filter:                     1069  (0.0596241); expected 358.6 (0.02)
Passed Vit filter:                       138  (0.00769703); expected 17.9 (0.001)
Passed Fwd filter:                        14  (0.000780858); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 0.53u 0.27s 00:00:00.80 Elapsed: 00:00:00.42
# Mc/sec: 1464.98
//
Query:       KOO22174.1  [L=499]
Description: zeaxanthin epoxidase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    4.2e-17   62.4   1.2    1.1e-09   38.1   0.0    3.0  2  FAD_binding_3   FAD binding domain
      6e-06   26.4   0.1    1.4e-05   25.2   0.1    1.6  1  NAD_binding_8   NAD(P)-binding Rossmann-like domain
    8.7e-05   21.8   0.1    0.00022   20.5   0.1    1.6  2  FAD_binding_2   FAD binding domain
    0.00056   19.2   0.1      0.002   17.4   0.0    1.7  2  Pyr_redox_2     Pyridine nucleotide-disulphide oxidoreductase
    0.00057   19.6   0.1    0.00093   18.9   0.1    1.3  1  DAO             FAD dependent oxidoreductase
  ------ inclusion threshold ------
      0.029   13.2   0.0        3.4    6.4   0.1    2.1  2  Trp_halogenase  Tryptophan halogenase
       0.07   11.8   0.0        0.1   11.3   0.0    1.2  1  HI0933_like     HI0933-like protein
      0.085   12.2   0.0       0.12   11.7   0.0    1.2  1  FAD_oxidored    FAD dependent oxidoreductase
       0.15   11.1   0.0       0.24   10.4   0.0    1.2  1  SE              Squalene epoxidase
        1.4    8.2   3.1          2    7.6   0.4    2.4  3  AlaDh_PNT_C     Alanine dehydrogenase/PNT, C-terminal domain


Domain annotation for each model (and alignments):
>> FAD_binding_3  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.9   0.3     2e-07   0.00035       3     170 ..      29     202 ..      27     211 .. 0.59
   2 !   38.1   0.0   5.9e-13   1.1e-09     281     345 ..     319     384 ..     302     388 .. 0.91

  Alignments for each domain:
  == domain 1  score: 19.9 bits;  conditional E-value: 2e-07
                    EEEEE--SHHHHHHHHHHHHTTHHEEEEESSSSSCCSSS--EEEHHHHHH...HHHTT-HHHHHHHSEECCCCEEEEEEECCCC....CEEEEEHH CS
  FAD_binding_3   3 dVlIVGaGpaGlmlallLseaGvrvvlvekrsttvvlpradglnqrtmel...lrqlGledrilaegapnelmgealynelsdt....pkaradle 91 
                    +V+I G+G  Gl +a  L+++G +v + e+ s+  + +    + +  ++    ++ + l+d ++a +   +  +      l+d       a  dl+
     KOO22174.1  29 SVCIAGGGIGGLFTAVTLRRQGFDVAVFERTSEYRPFGGPIQIASNGLDAvgrIDPVLLKDILAAATCIGDRKNG-----LKDGksneWFATFDLK 119
                    69****************************999888875555554444430003333333333333322222222.....2333443344444444 PP

                    ..CHHCST-CEE--HHHHHHHHHHHHHHHTEEETCSEEEECCEECCCCC.....CCEEEECCTTEEEEEEEEEEEE--GTT-HHHH CS
  FAD_binding_3  92 ..lesspervtvypqteleriLvehaeerglqvrfktevesleqdeegv.....taevrdketgeeetvrakYlvGaDGgrStvrk 170
                      +e ++++++v+    +++ L+ ++++    v  + ev++ eq+e  +     +  v+   ++ + + ++++l+G DG +S++r+
     KOO22174.1 120 spAEKRGQHPSVVIDRPVLQELLLKRVADC--VTTGVEVVGCEQHEGDEgssrpHGSVTTLLSDGR-RHESDFLIGSDGTKSKIRS 202
                    667777777777776666666655555554..3445555555554443311111333444444444.7899999999999999996 PP

  == domain 2  score: 38.1 bits;  conditional E-value: 5.9e-13
                    SEETTEEE-GGGTEEE-STTSHHHHHHHHHHHHHHHHHHHHHTT.SS-GGGGHHHHHHHHHHHHHH CS
  FAD_binding_3 281 yrkgrvflaGDAaHihpPtgGqGlNtaiqDavnLawkLaavlkG.eAkeelLdtYeeerravaqav 345
                    +  +rv+l GDAaH + P  GqG  +ai+Da+ L++ L+ v +  +A +  L+ Y+++r  +a+av
     KOO22174.1 319 WAMNRVCLLGDAAHPMMPNLGQGGCMAIEDAYVLGRELGRVDNQpSAIPLALKRYNQNRVVRAAAV 384
                    7789*************************************8743788999********9999886 PP

>> NAD_binding_8  NAD(P)-binding Rossmann-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.2   0.1   7.9e-09   1.4e-05       1      29 [.      32      60 ..      32      69 .. 0.93

  Alignments for each domain:
  == domain 1  score: 25.2 bits;  conditional E-value: 7.9e-09
                   EE--SHHHHHHHHHHHCCTEEEEEE-SSS CS
  NAD_binding_8  1 IvGaGlsGlvaAylLakagfdvlllekrd 29
                   I G+G++Gl +A +L+++gfdv ++e+ +
     KOO22174.1 32 IAGGGIGGLFTAVTLRRQGFDVAVFERTS 60
                   67************************975 PP

>> FAD_binding_2  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.5   0.1   1.2e-07   0.00022       2      49 ..      30      80 ..      29      86 .. 0.87
   2 ?   -2.4   0.0         1   1.9e+03      88     169 ..     274     372 ..     271     396 .. 0.57

  Alignments for each domain:
  == domain 1  score: 20.5 bits;  conditional E-value: 1.2e-07
                   EEEE--SHHHHHHHHHHHHTTT-EEEEESSSG...GGSGGGG--S-EE-TT CS
  FAD_binding_2  2 viViGsGlAGLaAAleaaeaGlkvavvekeqe...fggatawsqGgidavl 49
                   v + G+G++GL  A++++++G +vav e ++e   fgg +++++ g+dav+
     KOO22174.1 30 VCIAGGGIGGLFTAVTLRRQGFDVAVFERTSEyrpFGGPIQIASNGLDAVG 80
                   6799************************99752227789999999999998 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 1
                    THHHHHHHHHHTT----BCCTSSB-EEE-TT-SST.............EEEE-.STT-........HHHHHHHHHHHHHHTCT...EEEEESEEEE CS
  FAD_binding_2  88 aapeavdeLeelgvpfsrtedgpvdvrelGglsat.............artlhdaadarr..etlvtghallarlvesarkag...vdfqertead 165
                    +++ a+d+L+  +  +s++  + +d +++ ++ ++              r++   +da    ++     +++a   ++++ ++   vd q+++  +
     KOO22174.1 274 KGEGALDFLRTEFEGWSEEVFQLIDETPFAEVEQRdlydqppqltwamNRVCL-LGDAAHpmMPNLGQGGCMAIEDAYVLGRElgrVDNQPSAIPL 368
                    66777788888888888866667777777777777666666666666645555.333333324444444555555555544445466666666666 PP

                    EEEE CS
  FAD_binding_2 166 eLiv 169
                    +L +
     KOO22174.1 369 ALKR 372
                    6655 PP

>> Pyr_redox_2  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.4   0.0   1.1e-06     0.002       2      42 ..      29      70 ..      28     105 .. 0.82
   2 ?   -1.6   0.0       0.7   1.3e+03     197     240 ..     153     199 ..     122     204 .. 0.72

  Alignments for each domain:
  == domain 1  score: 17.4 bits;  conditional E-value: 1.1e-06
                 SEEEE--SHHHHHHHHHHHHHTS-EEEEE.TTHCHHHCSHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxx RF
  Pyr_redox_2  2 dvvviGgGpAGlaaaltlaqagakvtlve.legtclnggcll 42
                 +v++ GgG++Gl +a tl+++g++v+++e   ++ ++gg++ 
   KOO22174.1 29 SVCIAGGGIGGLFTAVTLRRQGFDVAVFErTSEYRPFGGPIQ 70
                 79**************************97667777777765 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 0.7
                  TEEEEESCEEEEEEETTE....EEEEEETTSCEEEESEEEE-S-EEES CS
                  xxxxxxxxxxxxxxxxxx....xxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2 197 Gvevklgtsvkeidgnge....klevvledgeeidadlvvvavGvrps 240
                  Gvev+ g++ +e d+ ++    ++++ l+dg++ + d ++ + G + +
   KOO22174.1 153 GVEVV-GCEQHEGDEGSSrphgSVTTLLSDGRRHESDFLIGSDGTKSK 199
                  66666.555555554444677788899999999999999998887765 PP

>> DAO  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.9   0.1   5.2e-07   0.00093       2      30 ..      30      60 ..      29      66 .. 0.91

  Alignments for each domain:
  == domain 1  score: 18.9 bits;  conditional E-value: 5.2e-07
                EEEECTSHHHHHHHHHHHHTT..EEEEESSS CS
         DAO  2 vviiGGGiiGlstAyeLarrg..Vtllekgd 30
                v+i GGGi Gl+tA  L r+g  V+++e+ +
  KOO22174.1 30 VCIAGGGIGGLFTAVTLRRQGfdVAVFERTS 60
                99***************8889*******985 PP

>> Trp_halogenase  Tryptophan halogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.4   0.1    0.0019       3.4       2      32 ..      30      57 ..      29      62 .. 0.86
   2 ?    4.7   0.0    0.0064        12     159     213 ..     142     200 ..     114     227 .. 0.77

  Alignments for each domain:
  == domain 1  score: 6.4 bits;  conditional E-value: 0.0019
                    EEEE--SHHHHHHHHHHHHHTTTSSEEEEEE CS
  Trp_halogenase  2 ivivGGGtaGwlaAaalakalkgklevtlve 32
                    + i+GGG+ G  +A +l++++   ++v + e
      KOO22174.1 30 VCIAGGGIGGLFTAVTLRRQG---FDVAVFE 57
                    89*****************99...6666655 PP

  == domain 2  score: 4.7 bits;  conditional E-value: 0.0064
                     HHHHHHH..HCT-EEEE--EEEEE...E-TTS-EEEEEETTS-EEE-SEEEE-SGGG-II CS
  Trp_halogenase 159 fLrrvae..arGvtrvegkvvevq...ldedgrveslrledgreveadlfiDcsGfrgll 213
                     +L+rva     Gv++v  + +e +    +++g+v+ l   dgr+ e d+ i   G ++++
      KOO22174.1 142 LLKRVADcvTTGVEVVGCEQHEGDegsSRPHGSVTTLLS-DGRRHESDFLIGSDGTKSKI 200
                     3455554224588888777776541115679*****977.***************99986 PP

>> HI0933_like  HI0933-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   5.7e-05       0.1       2      33 ..      29      60 ..      28      75 .. 0.91

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 5.7e-05
                 SEEEE--SHHHHHHHHHHHHTT--EEEE-SSS CS
  HI0933_like  2 dviviGgGaAGlmaAisaakrgkrVlllekak 33
                 +v + GgG  Gl++A++++++g +V+++e+++
   KOO22174.1 29 SVCIAGGGIGGLFTAVTLRRQGFDVAVFERTS 60
                 58999************************976 PP

>> FAD_oxidored  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   6.9e-05      0.12       2      32 ..      30      60 ..      29      68 .. 0.93

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 6.9e-05
  FAD_oxidored  2 vvVvGGgpaGvaAAiaAaraGakvlLveerg 32
                  v++ GGg++G+  A++  r+G  v++ e++ 
    KOO22174.1 30 VCIAGGGIGGLFTAVTLRRQGFDVAVFERTS 60
                  99************************99875 PP

>> SE  Squalene epoxidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.0   0.00013      0.24     130     206 ..     322     396 ..     308     406 .. 0.84

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00013
          SE 130 kGlillGDalnmRHPltggGmtvalnDivllskllkpledlsdeekvleelksfyvkRkeldavvnvLsialyslfa 206
                 + ++llGDa     P  g G  +a++D+++l + l  ++  ++ +++  +lk +  +R   +a v  +s a   ++ 
  KOO22174.1 322 NRVCLLGDAAHPMMPNLGQGGCMAIEDAYVLGRELGRVD--NQPSAIPLALKRYNQNRVVRAAAVQGMSRASSAILF 396
                 569*******9999**********************994..356788889999999999999999988888777665 PP

>> AlaDh_PNT_C  Alanine dehydrogenase/PNT, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.6   0.4    0.0011         2      28      61 ..      27      60 ..       4      64 .. 0.82
   2 ?   -3.2   0.0       2.4   4.2e+03       9      33 ..     370     394 ..     368     395 .. 0.78
   3 ?   -0.5   0.0      0.35   6.3e+02      20      48 ..     450     478 ..     446     486 .. 0.86

  Alignments for each domain:
  == domain 1  score: 7.6 bits;  conditional E-value: 0.0011
                 --EEEEESTSHHHHHHHHHHHHTT-EEEEEESSH CS
  AlaDh_PNT_C 28 pakvlviGgGvaGlqAiatakglgakVtvlDvrp 61
                 +  v + GgG+ Gl  + t ++ g +V v++  +
   KOO22174.1 27 RPSVCIAGGGIGGLFTAVTLRRQGFDVAVFERTS 60
                 4579*************************99865 PP

  == domain 2  score: -3.2 bits;  conditional E-value: 2.4
                  CSCGCTSEEETTCEETCB---EEEE CS
  AlaDh_PNT_C   9 lekffggkgtlaGgvpgvepakvlv 33 
                  l+++++ +++ a+ v+g+++a   +
   KOO22174.1 370 LKRYNQNRVVRAAAVQGMSRASSAI 394
                  7788888899999999988887666 PP

  == domain 3  score: -0.5 bits;  conditional E-value: 0.35
                  TCEETCB---EEEEESTSHHHHHHHHHHH CS
  AlaDh_PNT_C  20 aGgvpgvepakvlviGgGvaGlqAiatak 48 
                   ++v+g + a+ + +G+ va  q i  a 
   KOO22174.1 450 ETRVEGLSLAEKVLMGVEVAASQGIGRAL 478
                  5789999****************998875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (499 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       294  (0.016398); expected 358.6 (0.02)
Passed bias filter:                      273  (0.0152267); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.55u 0.25s 00:00:00.80 Elapsed: 00:00:00.42
# Mc/sec: 3530.23
//
Query:       KOO22175.1  [L=110]
Description: sjogren syndrome nuclear autoantigen 1 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
     0.0073   16.6   1.9     0.0073   16.6   1.9    1.8  2  KxDL          Uncharacterized conserved protein
     0.0079   16.7   8.0     0.0079   16.7   8.0    1.5  1  APG6_N        Apg6 coiled-coil region
     0.0095   15.1   1.5       0.01   15.0   1.5    1.1  1  DUF3086       Protein of unknown function (DUF3086)
  ------ inclusion threshold ------
      0.012   15.4   5.3      0.015   15.2   5.3    1.2  1  DUF724        Protein of unknown function (DUF724)
      0.028   13.8  12.2        1.4    8.2   1.3    2.0  1  GAS           Growth-arrest specific micro-tubule binding
      0.031   13.2  10.0      0.036   12.9  10.0    1.1  1  Spc7          Spc7 kinetochore protein
      0.032   14.5   0.5      0.085   13.1   0.1    1.8  2  YbfN          YbfN-like lipoprotein
       0.04   14.0  12.3      0.041   14.0  11.7    1.3  1  TPR_MLP1_2    TPR/MLP1/MLP2-like protein
       0.05   14.2   7.2       0.12   12.9   1.6    2.1  2  Syntaxin-6_N  Syntaxin 6, N-terminal
       0.14   12.2   2.8       0.55   10.3   1.1    1.8  2  DUF1664       Protein of unknown function (DUF1664)
       0.22   12.2   2.8       0.25   12.0   1.3    1.9  2  SlyX          SlyX
       0.36   10.7   1.2       0.46   10.4   1.1    1.3  1  DUF2721       Protein of unknown function (DUF2721)
        0.6    9.4   4.8       0.76    9.0   4.8    1.3  1  CorA          CorA-like Mg2+ transporter protein
        1.2    8.5   6.5        1.8    7.9   6.5    1.4  1  FAM76         FAM76 protein
        1.9    8.0   8.8       0.78    9.3   1.6    2.0  2  HAUS6_N       HAUS augmin-like complex subunit 6 N-terminus
        2.8    8.5  10.4        8.6    6.9  10.4    2.0  1  ZapB          Cell division protein ZapB
          7    6.7  11.1         39    4.3  11.1    1.9  1  UPF0242       Uncharacterised protein family (UPF0242) N-term


Domain annotation for each model (and alignments):
>> KxDL  Uncharacterized conserved protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   1.9   6.9e-06    0.0073      23      81 ..       5      63 ..       2      70 .. 0.95
   2 ?    0.3   0.1      0.85   8.9e+02      40      59 ..      78      97 ..      64     108 .. 0.49

  Alignments for each domain:
  == domain 1  score: 16.6 bits;  conditional E-value: 6.9e-06
        KxDL 23 grlnkknreLlelnalsqerlaklrarfkqgtkllkevkkdLesifkkirslkaklakk 81
                ++l++ n+ L ++++++ e+ ++l+  ++   +   ++++dL+ +++++ +++++la+k
  KOO22175.1  5 ATLQNYNNDLVACIEELREKREELNRSIAADEEEKAKIQNDLRILTERLARINDNLARK 63
                57999***************************************************997 PP

  == domain 2  score: 0.3 bits;  conditional E-value: 0.85
        KxDL 40 qerlaklrarfkqgtkllke 59
                ++ ++k+ +  +   ++lk+
  KOO22175.1 78 EAAYSKIMEASQTLLHVLKR 97
                33333333333333333333 PP

>> APG6_N  Apg6 coiled-coil region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   8.0   7.5e-06    0.0079      54     118 ..      16      80 ..       3      95 .. 0.88

  Alignments for each domain:
  == domain 1  score: 16.7 bits;  conditional E-value: 7.5e-06
      APG6_N  54 eeleklekeeeelleeLkelekereeleaelaaleeelealeeeeerfwreynelqlelleleee 118
                   +e+l++++eel + +++ e+e+++++++l+ l+e l++++++ +r+++++ne++ + +e e  
  KOO22175.1  16 ACIEELREKREELNRSIAADEEEKAKIQNDLRILTERLARINDNLARKVSSRNEYDKTITETEAA 80 
                 45899***************************************************999998876 PP

>> DUF3086  Protein of unknown function (DUF3086)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   1.5   9.6e-06      0.01       5      57 ..      18      73 ..      14     109 .. 0.79

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 9.6e-06
     DUF3086  5 lkeleerkqalqieveqLerrkeriekelr...tsfaGvsqdlairvqgfkdyLvg 57
                ++el+e++++l+ ++   e+ k +i+++lr   +  a   ++la++v + ++y  +
  KOO22175.1 18 IEELREKREELNRSIAADEEEKAKIQNDLRiltERLARINDNLARKVSSRNEYDKT 73
                789*************************9744368999***********9999655 PP

>> DUF724  Protein of unknown function (DUF724)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.2   5.3   1.4e-05     0.015     104     176 ..      18      90 ..      12     105 .. 0.93

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 1.4e-05
      DUF724 104 qtklleerkklekkieeeesekrkleeeidelekkilelerqlallkekkeaadkeiarlkseaekleeeled 176
                  ++l+e+r++l+++i+ +e+ek+k++++++ l ++ ++++ +la++ + +++ dk i + ++  +k+ e+ + 
  KOO22175.1  18 IEELREKREELNRSIAADEEEKAKIQNDLRILTERLARINDNLARKVSSRNEYDKTITETEAAYSKIMEASQT 90 
                 57899************************************************************99888765 PP

>> GAS  Growth-arrest specific micro-tubule binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.2   1.3    0.0013       1.4       4      44 ..      68     108 ..      65     110 .] 0.94

  Alignments for each domain:
  == domain 1  score: 8.2 bits;  conditional E-value: 0.0013
         GAS   4 knHekafneiknYYnditrnNLelIkslKeeieelkkkeer 44 
                 ++++k+++e ++ Y++i +   +l   lK e  +l kk+++
  KOO22175.1  68 NEYDKTITETEAAYSKIMEASQTLLHVLKRESVNLTKKKQA 108
                 689********************************999987 PP

>> Spc7  Spc7 kinetochore protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9  10.0   3.5e-05     0.036     163     261 ..       5     106 ..       1     110 [] 0.64

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 3.5e-05
        Spc7 163 eeldellpeleeekaeleeeleklqe..aaeelesid.keeLeelreelaelkaeieekkkelaelqeqleeleekieelkeqkseleeeiaeaervle 258
                 + l+++ ++l++  +el+e+ e+l++  aa+e e+ + +++L+ l e+la+++ ++++k    +e  + ++e e++ +++ e  ++l   ++++   l 
  KOO22175.1   5 ATLQNYNNDLVACIEELREKREELNRsiAADEEEKAKiQNDLRILTERLARINDNLARKVSSRNEYDKTITETEAAYSKIMEASQTLLHVLKRESVNLT 103
                 556666677777777777777777664444444444446777778888888888888777777777777777777777777777777666665555555 PP

        Spc7 259 eck 261
                 ++k
  KOO22175.1 104 KKK 106
                 555 PP

>> YbfN  YbfN-like lipoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.0       1.8   1.9e+03      24      26 ..      24      26 ..       6      52 .. 0.54
   2 ?   13.1   0.1     8e-05     0.085       9      42 ..      65      99 ..      57     109 .. 0.84

  Alignments for each domain:
  == domain 1  score: -0.8 bits;  conditional E-value: 1.8
        YbfN 24 npd 26
                + +
  KOO22175.1 24 KRE 26
                222 PP

  == domain 2  score: 13.1 bits;  conditional E-value: 8e-05
        YbfN  9 rlkeaysacintaeGnpdkv.eacqtvlnvlkkek 42
                  +++y + i ++e    k+ ea qt+l+vlk+e 
  KOO22175.1 65 SSRNEYDKTITETEAAYSKImEASQTLLHVLKRES 99
                46899***********9997589*********986 PP

>> TPR_MLP1_2  TPR/MLP1/MLP2-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0  11.7   3.8e-05     0.041       3      92 ..      18     107 ..      16     110 .] 0.95

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 3.8e-05
  TPR_MLP1_2   3 lksleeeikslkeekeeaeaklqklqedlekqaeiakeaqqkYerelvkhaedvkelqalreelnelkaeiaelkaeaesakaeleesee 92 
                 +++l+e+ ++l+ ++++ e++ +k+q+dl+  +e++++ +++ +r +   +e  k+++++ + ++++ +  ++l   +++ + +l ++++
  KOO22175.1  18 IEELREKREELNRSIAADEEEKAKIQNDLRILTERLARINDNLARKVSSRNEYDKTITETEAAYSKIMEASQTLLHVLKRESVNLTKKKQ 107
                 6899*********************************************************************99999999999988887 PP

>> Syntaxin-6_N  Syntaxin 6, N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   1.6   0.00012      0.12      38      88 ..       6      56 ..       2      60 .. 0.88
   2 ?    7.3   2.5    0.0064       6.7       7      64 ..      39      95 ..      37     109 .. 0.75

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 0.00012
  Syntaxin-6_N 38 eldetrteLrkalrsiewdledLeetvriveknpskfkidekelsrrrafv 88
                   l++ +++L + +++++++ e+L++++++ e++++k + d + l++r a +
    KOO22175.1  6 TLQNYNNDLVACIEELREKREELNRSIAADEEEKAKIQNDLRILTERLARI 56
                  688999*********************999999999999998888887666 PP

  == domain 2  score: 7.3 bits;  conditional E-value: 0.0064
  Syntaxin-6_N  7 keeVqkslnkaeslyrrwerlledtssstseeldetrteLrkalrsiewdledLeetv 64
                  k+++q+ l+ +++ ++r ++ l  +  s+++e+d+t te ++a+++i +  + L ++ 
    KOO22175.1 39 KAKIQNDLRILTERLARINDNLARKV-SSRNEYDKTITETEAAYSKIMEASQTLLHVL 95
                  67788888888888888875333333.459*****************99999888776 PP

>> DUF1664  Protein of unknown function (DUF1664)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   1.3   0.00063      0.67      47     104 ..       4      61 ..       2      80 .. 0.80
   2 ?   10.3   1.1   0.00052      0.55      55     110 ..      40      95 ..      36     107 .. 0.88

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.00063
     DUF1664  47 skqleqvseslaatkrhLssridrvdkkldeqkeiskeikeevtevredlseigedve 104
                 +  l++  ++l a  ++L ++ +++++++ + +e +++i++++  + e l++i++++ 
  KOO22175.1   4 GATLQNYNNDLVACIEELREKREELNRSIAADEEEKAKIQNDLRILTERLARINDNLA 61 
                 5678888888888889999999999999999999999999999999999999988775 PP

  == domain 2  score: 10.3 bits;  conditional E-value: 0.00052
     DUF1664  55 eslaatkrhLssridrvdkkldeqkeiskeikeevtevredlseigedvesvkeav 110
                 +++++  r L++r++r++++l       +e ++ +te +   s+i e ++++ ++ 
  KOO22175.1  40 AKIQNDLRILTERLARINDNLARKVSSRNEYDKTITETEAAYSKIMEASQTLLHVL 95 
                 678888999************************************99999887665 PP

>> SlyX  SlyX
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   1.3   0.00023      0.25      20      55 ..      26      61 ..      15      72 .. 0.87
   2 ?   -0.8   0.0       2.3   2.5e+03      35      35 ..      87      87 ..      65     109 .. 0.52

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 0.00023
                HHHHHHHHHHHHHHHHHHHHHHHHHHT-XXXXXXXX CS
        SlyX 20 eeLndvvaeqqqqidrlqrqlrllaerlkeleessg 55
                eeLn+ +a+ +++ +++q  lr l+erl+ ++++ +
  KOO22175.1 26 EELNRSIAADEEEKAKIQNDLRILTERLARINDNLA 61
                8***************************98887765 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 2.3
                H CS
        SlyX 35 r 35
                +
  KOO22175.1 87 A 87
                2 PP

>> DUF2721  Protein of unknown function (DUF2721)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   1.1   0.00043      0.46      12      65 ..       4      58 ..       1      68 [. 0.82

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00043
     DUF2721 12 gllllvltnRlariadrirqLedeleelaeeeee.deelakeiknlrrRarlirr 65
                g+ l  ++n l + ++ +r+ ++el+++ + +ee ++++++ +++l +R+  i+ 
  KOO22175.1  4 GATLQNYNNDLVACIEELREKREELNRSIAADEEeKAKIQNDLRILTERLARIND 58
                67788899999999*****9888887766666665999***********998875 PP

>> CorA  CorA-like Mg2+ transporter protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.0   4.8   0.00073      0.76     116     172 ..       7      65 ..       5     105 .. 0.83

  Alignments for each domain:
  == domain 1  score: 9.0 bits;  conditional E-value: 0.00073
        CorA 116 ldeivdrlfellekleeeldeledel..edstkkeilrelaqlrrrlvklrralapnre 172
                 l+  +++l + +e+l e+++el + +  ++++k++i ++l  l +rl+++ + la++  
  KOO22175.1   7 LQNYNNDLVACIEELREKREELNRSIaaDEEEKAKIQNDLRILTERLARINDNLARKVS 65 
                 78889999******************************************999987654 PP

>> FAM76  FAM76 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.9   6.5    0.0017       1.8     209     298 ..       6     105 ..       1     107 [. 0.57

  Alignments for each domain:
  == domain 1  score: 7.9 bits;  conditional E-value: 0.0017
       FAM76 209 sldsnssdhlvavtqLkeeiaslkkqleqkdqellekdkkitelk..........aellekekelreklkelekeakekieklekkirellkevaelsk 297
                 +l+  ++d +  +++L+e+ ++l++ ++  ++e  + +  +  l+          a ++++++e  + ++e+e+ +++ +e+ ++  + l++e  +l+k
  KOO22175.1   6 TLQNYNNDLVACIEELREKREELNRSIAADEEEKAKIQNDLRILTerlarindnlARKVSSRNEYDKTITETEAAYSKIMEASQTLLHVLKRESVNLTK 104
                 567778999999*************99876655444444444444000000000034444455555555555555555555556666666666666666 PP

       FAM76 298 k 298
                 k
  KOO22175.1 105 K 105
                 5 PP

>> HAUS6_N  HAUS augmin-like complex subunit 6 N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3   1.6   0.00074      0.78     170     210 ..       4      44 ..       1      61 [. 0.64
   2 ?    3.7   1.3     0.037        39     159     201 ..      56      98 ..      46     110 .] 0.57

  Alignments for each domain:
  == domain 1  score: 9.3 bits;  conditional E-value: 0.00074
     HAUS6_N 170 rqkyqenaqllekkerelraeleelqaelkaekeaakkekk 210
                  +++q++ + l+ +++elr+++eel++ + a++e+++k ++
  KOO22175.1   4 GATLQNYNNDLVACIEELREKREELNRSIAADEEEKAKIQN 44 
                 56778888888888888888888888877744333222222 PP

  == domain 2  score: 3.7 bits;  conditional E-value: 0.037
     HAUS6_N 159 flrekaaadrarqkyqenaqllekkerelraeleelqaelkae 201
                 + +++a++++ r++y +   ++e  + ++ +  + l   lk e
  KOO22175.1  56 INDNLARKVSSRNEYDKTITETEAAYSKIMEASQTLLHVLKRE 98 
                 4444455555577777777777777777777777766666522 PP

>> ZapB  Cell division protein ZapB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.9  10.4    0.0082       8.6      23      69 ..       7      53 ..       4     109 .. 0.72

  Alignments for each domain:
  == domain 1  score: 6.9 bits;  conditional E-value: 0.0082
        ZapB 23 LqmeieeLkeeneelkeenreleeeneqlkeereawqerlkkLLgkl 69
                Lq+ + +L +  eel e+ +el++++ + +ee++++q+ l+ L ++l
  KOO22175.1  7 LQNYNNDLVACIEELREKREELNRSIAADEEEKAKIQNDLRILTERL 53
                55555555555555555555555555555555555555444444433 PP

>> UPF0242  Uncharacterised protein family (UPF0242) N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.3  11.1     0.037        39      90     156 ..      17      86 ..       5     110 .] 0.66

  Alignments for each domain:
  == domain 1  score: 4.3 bits;  conditional E-value: 0.037
     UPF0242  90 aleelqeeeeeLkeeldakeeelerlkeenqqLqekleaiaedfee...lkleleeqLaekqellqeyqe 156
                  +eel+e+ eeL++ ++a eee ++ +++   L e+l  i  + ++   ++ e+++++ e +   ++  e
  KOO22175.1  17 CIEELREKREELNRSIAADEEEKAKIQNDLRILTERLARINDNLARkvsSRNEYDKTITETEAAYSKIME 86 
                 5788888888888888888888888888888888888888774443111566666666666555444443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (110 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1819  (0.101456); expected 358.6 (0.02)
Passed bias filter:                      613  (0.0341904); expected 358.6 (0.02)
Passed Vit filter:                        89  (0.00496402); expected 17.9 (0.001)
Passed Fwd filter:                        17  (0.000948185); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              17  [number of targets reported over threshold]
# CPU time: 0.46u 0.27s 00:00:00.73 Elapsed: 00:00:00.41
# Mc/sec: 797.90
//
Query:       KOO22176.1  [L=443]
Description: heat shock protein 90 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
   1.7e-207  690.4  11.6     2e-207  690.2  11.6    1.0  1  HSP90           Hsp90 protein
  ------ inclusion threshold ------
      0.032   13.9   0.0       0.15   11.7   0.0    2.2  2  ComK            ComK protein
      0.054   13.5   0.9       0.15   12.0   0.9    1.7  1  Cofac_haem_bdg  Haem-binding uptake, Tiki superfamily, ChaN
       0.12   12.4   0.1       0.36   10.9   0.1    1.8  1  LOH1CR12        Tumour suppressor protein
       0.48    9.8   3.6       0.49    9.8   0.3    2.3  2  TAF1_subA       TAF RNA Polymerase I subunit A


Domain annotation for each model (and alignments):
>> HSP90  Hsp90 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  690.2  11.6  5.6e-211    2e-207      78     513 ..       2     436 ..       1     441 [. 0.98

  Alignments for each domain:
  == domain 1  score: 690.2 bits;  conditional E-value: 5.6e-211
                 EEEESXXSXGGGSXGGGSXHHHHHHHHHHTTTTTSXXSEEEEEEEXSSSXEEEEEEEXSSXXTTTTTTTTTSXXTTEEEEETTEEEESXXTTSSXGGGT CS
       HSP90  78 wellNkqkpiWlrkpkevteeeYkeFYkslskdsedplavkhfsaegevefkaiLfvPkrapsdlfekykkkkknnikLYvrrVfitdefedllPkyLs 176
                 w+l+NkqkpiW+rkp+evt+eeY +FYk+ls+d+e++lavkhfs+eg++ef++iLfvPkrap+dlfe  kkk++ +ikLYvrrVfi+d++edl+P++L+
  KOO22176.1   2 WDLMNKQKPIWTRKPEEVTKEEYGAFYKALSNDWEEHLAVKHFSVEGQLEFTSILFVPKRAPFDLFEP-KKKNSGHIKLYVRRVFIMDNCEDLIPEWLT 99 
                 99*****************************************************************7.5699999*********************** PP

                 TXEEEEEESSSXSSSTHHHHHTCHHHHHHHHHHHHHHHHHHHTSXHHH..HHTHHHHHHHHHHHHHHHXGGGHHHHHTTXEEEETTEEEEEEEHHHHHH CS
       HSP90 177 FvkGvvdsddLPLNvsREtlqqnkilkvikkklvrKvlemlkklaeekeeykkfykefsknlklGiiedsanrkklakLlrfksskseeeltsLedYve 275
                 FvkGvvds+dLPLN+sREtlqqnkilkvikk++v+K++e++ +++e+ e++kkfy++f+kn+klGi+eds nr+kl++Ll++ s+ks++e+tsL+dY++
  KOO22176.1 100 FVKGVVDSEDLPLNISRETLQQNKILKVIKKNIVKKCIELFGEIQENAEDFKKFYEQFGKNVKLGIHEDSGNRAKLSELLMYFSTKSGDEQTSLKDYIS 198
                 *************************************************************************************************** PP

                 HSXTTXXEEEEEEXSSHHHHHTSGGGHHHHHTTXXEEEEXSTTHHHHHHTXSEETTEEEEETTBSTXXXXXXHHHHHHHHHHHHHHHHHHHHHHHTTTT CS
       HSP90 276 rmkekqksiYyiageskeevekspflerlkkkgyevlylvdpiDeyvvqqlkeyegkklvnvakegleleeeeeekkkkeelkkkfeeltkllkevlkd 374
                 rm e+qk+iYyi+ge+k++ve+spf+e++kk++yevl++vdpiDey+vqqlkey+gkklv+v+kegl++ee+ee+kk+ +el+++fe+l+kl+ke+l+d
  KOO22176.1 199 RMPESQKDIYYITGETKKSVETSPFIEKCKKRNYEVLFMVDPIDEYCVQQLKEYDGKKLVSVTKEGLKFEESEEDKKAWQELTADFEPLAKLMKEILGD 297
                 *************************************************************************************************** PP

                 TESEEEEXSSXSSXSEEEEBXTTSXXHHHHHHHHHHHHHHHSSTSSSSSXEEEEEXTTSHHHHHHHHHHHHTTTXHHHHHHHHHHHHHHHHHTTXXXSX CS
       HSP90 375 kvekvkvserlvdsPcvlvtseygwsanmerimkaqalrdkskssymsskktleinprhpiikeLkkkveedkedeeakdlaellyetallesGfsled 473
                 kvekv++ser+++sPcvlvt+eygw+anmerim+aqalrd+s+ssym+skkt+einp+h+i+keLk k+++dk d+++kdl++ll+et+ll+sGfsl++
  KOO22176.1 298 KVEKVVMSERMTESPCVLVTGEYGWTANMERIMRAQALRDNSMSSYMASKKTMEINPKHSIMKELKAKAAADKGDKTVKDLVHLLFETSLLTSGFSLDE 396
                 *************************************************************************************************** PP

                 HHHHHHHHHHHHTTTTHXXSTTTTTTGGGXGGGXXXXXXX CS
       HSP90 474 pasfakrierllklslgidedeeveeeeeveeeeeeeeee 513
                 pa+fa ri+r++kl+l+i++d+ev++ ee +  ee+++e 
  KOO22176.1 397 PATFAGRIHRMIKLGLSIEDDDEVDDVEELPPLEEDADEG 436
                 ******************9999888888877666666554 PP

>> ComK  ComK protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.0       1.2   4.3e+03     106     143 ..      19      56 ..      13      58 .. 0.75
   2 ?   11.7   0.0   4.2e-05      0.15       3      59 ..     342     398 ..     340     409 .. 0.89

  Alignments for each domain:
  == domain 1  score: -2.8 bits;  conditional E-value: 1.2
        ComK 106 vkelekkktkvlfkngksltldvskkslenqllrtaql 143
                 v+++e++     ++n+ + +l v++ s+e ql  t+ l
  KOO22176.1  19 VTKEEYGAFYKALSNDWEEHLAVKHFSVEGQLEFTSIL 56 
                 55556666666788888899999999999999888765 PP

  == domain 2  score: 11.7 bits;  conditional E-value: 4.2e-05
        ComK   3 kYvineeTmailpkydekkklvskvieeedeflvkqkplqiiekScryygssyegrk 59 
                 +Y+ +++Tm i pk +++k+l +k   ++++  vk  ++ + e+S+ + g s+ +  
  KOO22176.1 342 SYMASKKTMEINPKHSIMKELKAKAAADKGDKTVKDLVHLLFETSLLTSGFSLDEPA 398
                 799*******************************************99999887655 PP

>> Cofac_haem_bdg  Haem-binding uptake, Tiki superfamily, ChaN
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.9   4.2e-05      0.15     112     185 ..     260     348 ..     251     359 .. 0.65

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 4.2e-05
                     HHTT......------SSSS........-HHHHHHHHHHHHHHHT-..................TTTHHHHHHHHHHHHHHHHHHHHHHHH.- CS
  Cofac_haem_bdg 112 vareGleslseeeereraslpaeseileseeyraaleevlaehhcg..................eakeealerfveaQvlwDetMAesiaa.a 185
                     v++eGl+ ++e+ee+++a+ +  ++    e+  ++++e+l ++ ++                   +  +++er+++aQ+l+D+ M++ +a+  
      KOO22176.1 260 VTKEGLK-FEESEEDKKAWQELTAD---FEPLAKLMKEILGDKVEKvvmsermtespcvlvtgeYGWTANMERIMRAQALRDNSMSSYMASkK 348
                     7777774.44556666666654443...3334444444444443335555555556666999988888999****************998741 PP

>> LOH1CR12  Tumour suppressor protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.1   9.9e-05      0.36      48      88 ..     118     159 ..     107     168 .. 0.84

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 9.9e-05
    LOH1CR12  48 Aadqaklverik.evdakiitllaelrekqkqyasyaealsk 88 
                   +q+k+ + ik ++ +k i+l+ e++e+ + ++++ e++ k
  KOO22176.1 118 TLQQNKILKVIKkNIVKKCIELFGEIQENAEDFKKFYEQFGK 159
                 678******99636999**********************987 PP

>> TAF1_subA  TAF RNA Polymerase I subunit A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.4   0.2     0.093   3.3e+02      28      94 ..     125     193 ..     113     229 .. 0.63
   2 ?    9.8   0.3   0.00014      0.49     258     311 ..     249     301 ..     241     368 .. 0.81

  Alignments for each domain:
  == domain 1  score: 0.4 bits;  conditional E-value: 0.093
   TAF1_subA  28 pkeareiiwkvgleilkhnhpkstqeiydvfmerlknlgvknykk.i....slehalflllqgnieeakrnl 94 
                  k  ++ i k  +e++ +   ++++e+++ f+e+ + + +    + +    +l  +l++++ +  +e   +l
  KOO22176.1 125 LKVIKKNIVKKCIELFGE--IQENAEDFKKFYEQFGKNVKLGIHEdSgnraKLSELLMYFSTKSGDEQ-TSL 193
                 444555556666677666..788888888888888744443333331445599999999988887776.444 PP

  == domain 2  score: 9.8 bits;  conditional E-value: 0.00014
   TAF1_subA 258 kkgeystkllLevialhLDaagwkenlkiWkeLasclkqisvksnkipkvfvee 311
                  k ey+ k+l++v  + L + + +e+ k+W+eL + ++ + + +++i  + ve+
  KOO22176.1 249 LK-EYDGKKLVSVTKEGLKFEESEEDKKAWQELTADFEPLAKLMKEILGDKVEK 301
                 45.899*******************************84444444444444433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (443 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       817  (0.0455686); expected 358.6 (0.02)
Passed bias filter:                      446  (0.0248759); expected 358.6 (0.02)
Passed Vit filter:                        47  (0.00262145); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.56u 0.27s 00:00:00.83 Elapsed: 00:00:00.44
# Mc/sec: 3047.30
//
Query:       KOO22177.1  [L=327]
Description: glutamine cyclotransferase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    6.1e-61  206.0   0.1    2.7e-34  118.7   0.0    2.1  2  Glu_cyclase_2  Glutamine cyclotransferase


Domain annotation for each model (and alignments):
>> Glu_cyclase_2  Glutamine cyclotransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   85.3   0.1   2.4e-28   4.4e-24      23     114 ..      34     129 ..      15     136 .. 0.88
   2 !  118.7   0.0   1.5e-38   2.7e-34     113     251 .]     149     305 ..     142     305 .. 0.83

  Alignments for each domain:
  == domain 1  score: 85.3 bits;  conditional E-value: 2.4e-28
  Glu_cyclase_2  23 aaeelkvevvaeyphdpeaftqGLefe.dgelyestGlegksslrkvdl...etgkvlkeaeldeelFgEGitvlgdklyqltwkegvafvydaet 114
                     + + ++e+va++ hdp+aftqGL f+  g+lyes Gl+++ss+r+v++    t ++lk+++l+++ F+EGit +gdkl+q+twke+v+ +y  ++
     KOO22177.1  34 DSYVSTYEIVATFDHDPNAFTQGLAFSaAGTLYESDGLYHQSSVRSVQVnadGTTSTLKSVPLPTTEFAEGITIVGDKLLQITWKEKVMHEYTINS 129
                    456779********************999******************996555566889******************************9998765 PP

  == domain 2  score: 118.7 bits;  conditional E-value: 1.5e-38
  Glu_cyclase_2 113 etleeigrvsyegeGWGlttdgkrlvmsdGsstltfldpktfaetksvevt......kdgke..vsklNELeyvkgeiyaNvw......qtdrilr 194
                     +l++++ ++++ eGWGl+ dg++l+++dGs++l+ l  ++ +  ++ ++t      kdg++  v+ +NELe+v ge++ N++      ++++i+r
     KOO22177.1 149 GDLQKVKDHPHDYEGWGLAGDGDKLYTTDGSDQLYTLALSDRRLLSKKTITdpklahKDGTPfsVHGVNELEMVGGELWGNLYpmyqgsHSECIAR 244
                    57999******************************99876666555554441122226777533789***************9666666689**** PP

  Glu_cyclase_2 195 idpatGkvtgvidlsalreeaekaake....dVlNGiAydpetdrlfvTGKlWpklfevkl 251
                    idpatG+v+g+id+++l + ++++ k+     VlNGiAy++ ++rl+vTGK+W+k+++v++
     KOO22177.1 245 IDPATGEVKGWIDMHGLFDLQSARVKRnpgsYVLNGIAYHEPSGRLYVTGKQWDKMYQVRI 305
                    ****************9987777655556669***************************86 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (327 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       339  (0.0189079); expected 358.6 (0.02)
Passed bias filter:                      318  (0.0177366); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.25s 00:00:00.71 Elapsed: 00:00:00.42
# Mc/sec: 2364.73
//
Query:       KOO22178.1  [L=449]
Description: ornithine aminotransferase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
   6.1e-112  374.2   0.0   8.6e-112  373.8   0.0    1.1  1  Aminotran_3  Aminotransferase class-III


Domain annotation for each model (and alignments):
>> Aminotran_3  Aminotransferase class-III
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  373.8   0.0  4.8e-116  8.6e-112       6     404 ..      56     442 ..      52     443 .. 0.96

  Alignments for each domain:
  == domain 1  score: 373.8 bits;  conditional E-value: 4.8e-116
                  B--SCEEEEEEEBTEEEETTS-EEEESSHHHHTTTT-BT-HHHHHHHHHHHTT-S---TTTCEEHHHHHHHHHHHHHCT-..SEEEEESSHHHHHHHH CS
  Aminotran_3   6 ednlllvitkaeGvyltdvdgkrylDlvssiavvnlGhahPkvvkavkeqaaklshvsfgaltnepalklaekllklapkgldkvflansGseAvetA 103
                  + +l++v++++ Gv ++dv g+rylD++s++++vn+Gh+hPk+++a++ qaakl+++s +a++n+ + + ++ +++ ++   d+v+ +n+G e  etA
   KOO22178.1  56 YAPLPVVLERGLGVHVWDVSGRRYLDFLSAYSAVNQGHSHPKILDALQRQAAKLTLTS-RAFHNNMLGEYERFVTEYFGY--DRVLPMNTGVEGGETA 150
                  667789****************************************************.*********************..**************** PP

                  HHHHHHHHHHTS..HCTT-EEEEETTT---SSHHHHHHSS--TTTTTTCTTB-TSEEEE-TTBGGGTB-HHHHHHHHHHHHHHHHCHTCCCEEEEEE- CS
  Aminotran_3 104 lKlarkyarekk..atektkiiafkgafHGrtlgalsvtgskkkyktlfgpflpevvrlkypdeevlkeneeeeaalleelealekkkkdevaAvivE 199
                  lKlar++ + +k  a+  + ++ ++++f Grt  a s +++ + ++++fgp lp+v+ ++y+d              l +lea  ++    +a++++E
   KOO22178.1 151 LKLARRWGYDVKgiAKDEALVLFCTHNFWGRTISACSSSSD-PSCRAGFGPYLPGVPLVPYND--------------LAALEAAFAQDGARIAGFMLE 233
                  **********9977777778999****************99.********************9..............3458888899*********** PP

                  SCETTTTSEB--CCHHHHHHHHHHHHT-EEEEE-TTTTTTTTSSSSGGGGC....TS--SEEEE-GGGGTT.SS-EEEEEEHHHHTTS-TTSB--TTT CS
  Aminotran_3 200 piqgegGvvvaspeflaklrelckkhdvllivDEvqtGfGrTGklfAleha....gvspDlmtlaKaltgG.lplsavlataevmqalapgshgsTfg 292
                  piqge+Gvvv+ +++l+++relc++++vl+i+DEvqtG+ rTGk+ A+++     +v+pD+++l+Kal+gG +p+savl  +evm +l+pg+hgsT+g
   KOO22178.1 234 PIQGEAGVVVPHEGYLRGVRELCTRYNVLMIADEVQTGLCRTGKMLACDYEqvkpDVKPDVLVLGKALSGGvYPVSAVLSSDEVMLTLRPGEHGSTYG 331
                  ************************************************9888899999**************************************** PP

                  T-HHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHCTT-TTEEEEEEETTEEEEEEBCCCETTC.HHHHHHHHHCTEE-EEETTTEEEE---TT CS
  Aminotran_3 293 GnplacavalavleiieeekllenaqelgaalkegLeelqkkyevikevRgkGlmiaielkeeaevke.keilkkakekGvlilsaGdnvirllppli 389
                  Gnpl cava+a+le++ ee l+ena+ +g++l++gL ++ ++   + +vRg+Gl+ ai +  e e+++  +++ + k++G+l +++++++irl+ppli
   KOO22178.1 332 GNPLGCAVAMAALEVLREERLAENAALMGERLRAGLAAIGSA--AVTTVRGRGLLNAIVIRPEGEKRNaGALCYAHKDAGLLAKPTHEHIIRLAPPLI 427
                  ****************************************87..5*************8888877555688*************************** PP

                  --HHHHHHHHHHHHH CS
  Aminotran_3 390 itdeeidelleilkk 404
                  it+++ide++ei+ k
   KOO22178.1 428 ITAAQIDEAIEIIAK 442
                  ************975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (449 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       295  (0.0164538); expected 358.6 (0.02)
Passed bias filter:                      262  (0.0146132); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.52u 0.27s 00:00:00.79 Elapsed: 00:00:00.47
# Mc/sec: 2902.09
//
Query:       KOO22179.1  [L=1028]
Description: DNA ligase 4 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    8.9e-33  114.0   0.0    2.4e-32  112.6   0.0    1.7  2  DNA_ligase_A_N   DNA ligase N terminus
    3.9e-29  101.8   0.0    3.2e-26   92.2   0.0    2.5  2  DNA_ligase_A_M   ATP dependent DNA ligase domain
    1.8e-14   54.1   0.0    6.2e-14   52.4   0.0    2.0  1  DNA_ligase_A_C   ATP dependent DNA ligase C terminal region
     0.0043   17.1   0.1      0.014   15.5   0.1    1.8  1  BRCT_3           BRCA1 C Terminus (BRCT) domain
  ------ inclusion threshold ------
      0.013   14.7   0.1      0.019   14.1   0.1    1.2  1  SopD             Salmonella outer protein D
      0.054   13.9   0.0       0.14   12.5   0.0    1.7  1  BRCT             BRCA1 C Terminus (BRCT) domain
      0.067   13.0   0.1       0.37   10.6   0.0    2.3  3  mRNA_cap_enzyme  mRNA capping enzyme, catalytic domain


Domain annotation for each model (and alignments):
>> DNA_ligase_A_N  DNA ligase N terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  112.6   0.0   9.5e-36   2.4e-32       1     173 []      19     202 ..      19     202 .. 0.92
   2 ?   -2.5   0.0       2.2   5.5e+03      94     145 ..     686     721 ..     658     737 .. 0.64

  Alignments for each domain:
  == domain 1  score: 112.6 bits;  conditional E-value: 9.5e-36
                     BCHHHHHHHHHHCC.---HHHHHHHHHHHHHTS-..SHHHHHHHHHHSS-CCC.S-.-----HHHHHHHHHHHHT--HHHHHHH........... CS
  DNA_ligase_A_N   1 pFaelaelfekieestkkrlekrailanffrkvesagpedlypalrLllPdyd.gr.eygigesllakalaealglskkkikda........... 82 
                     pF+++++ fe++   + +r +k  ++ ++  +   +g +d++p++rL lP++d +r +y ++ + la+ ++++l+l+   ++da           
      KOO22179.1  19 PFEKMCQCFEALTMANVNRFQKEGMMMKLWTQYG-KGVHDIFPLMRLTLPHLDtERpNYKLKHKNLARKYVDLLSLPDS-SDDAqkmlnwkkpsa 111
                     799***********55567888888888887766.4888**************************************55.888899********* PP

                     ...HHHHS-HHHHHHHHHCCHHHH------BHHHHHHHHHHHHH-STTHHHHHHHHHHHHHHHS-HHHHHHHHHHHCT---SS--HHHHHHHHH CS
  DNA_ligase_A_N  83 ...lakvgDlgevaeevlskrstlakkspltieevnelLdklaaagkgsedekkkilkkllkraspeEakyliriilkdlriglsektvldala 173
                         ++ g++ ev+++v++ r+t  +k+ +t+ evn+lLd+la+a++   ++k+++l k+    +++E+++l riilkd+ ig++e ++l  l+
      KOO22179.1 112 gftRNEQGNFPEVVYSVIKGRCT-VTKGHITVGEVNALLDELAQAQN--LEAKERVLMKMHTTTTAQEQRWLLRIILKDMHIGMKEDSILTMLH 202
                     *996668****************.9******************7766..99****************************************998 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 2.2
                     HHHHCCHHHH......------BHHHHHHHHHHHHH-STTHHHHHHHHHHHHHHHS-H CS
  DNA_ligase_A_N  94 eevlskrstl......akkspltieevnelLdklaaagkgsedekkkilkkllkrasp 145
                     ee+l+kr++       ++ ++l+ + + +lL++l                       +
      KOO22179.1 686 EELLAKRREWqaapegRPTPTLSADALKRLLKQLG----------------------A 721
                     45555555544444445555566666666666663......................2 PP

>> DNA_ligase_A_M  ATP dependent DNA ligase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.0   0.1    0.0015         4       1      32 [.     242     273 ..     242     277 .. 0.77
   2 !   92.2   0.0   1.3e-29   3.2e-26      60     204 .]     279     433 ..     274     433 .. 0.90

  Alignments for each domain:
  == domain 1  score: 7.0 bits;  conditional E-value: 0.0015
                     -EEEEEES..CHHHHHHHTTTSEEEEEEEESSEE CS
  DNA_ligase_A_M   1 pmLAeslk..siekalkkleekafivEiKyDGeR 32 
                     p LA++++  +++k + k  +++ ++E+K+DGeR
      KOO22179.1 242 PRLAHKADyrTVHKEMYK--KGDYVAEYKLDGER 273
                     678888886667777777..56777********* PP

  == domain 2  score: 92.2 bits;  conditional E-value: 1.3e-29
                     HHHHHHHBSTTESEEEEEEEEEEEETTTTCBEHHHHHCHHH.HCHCCTHHHHHHSEEEEEEEEEEEETTEEHTTSCHHHHHHHHHHHB--BTTTE CS
  DNA_ligase_A_M  60 vkalkeafkkdeksvilDGElvavdketgeilpfqklasrk.kkkkkveeklkeaelclfvFDiLyldgesltdeplkeRrklLeeilkesedrv 153
                        l+e++ ++ +++ilDGE+++++++tg   pf++ +s + + k ++++    +++c++vFD+ +l+g+ l  +p++eRr+lL+ +++ + + +
      KOO22179.1 279 APVLAECLSPELRECILDGEMMVWNQATGDYAPFGENRSLAgDYKRDLQRD--GYQPCYIVFDVVWLNGKGLASLPMRERRELLRPYVRWKAHSM 371
                     5568999*****************************999987777777777..9**********************************9999999 PP

                     EE--EEEE...........SSHHHHHHHHHHHHHTTECEEEEEETT-CC-TTCEEEEEEEEE CS
  DNA_ligase_A_M 154 elaeslev...........kdveeleelleeaiseglEGlvvKnpdskYepgkrsknwlKvK 204
                     +l+e+ +v           + + e+ ++l++a+++g+EG+++K+ +++Y pg+r  +w K+K
      KOO22179.1 372 QLSEQVVVephpqgkppseDHTIEIMNWLDRAMAKGYEGVMLKSLNAPYVPGSRDTDWQKLK 433
                     99999988666666665555677999**********************************99 PP

>> DNA_ligase_A_C  ATP dependent DNA ligase C terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.4   0.0   2.4e-17   6.2e-14       2      99 .]     460     583 ..     459     583 .. 0.86

  Alignments for each domain:
  == domain 1  score: 52.4 bits;  conditional E-value: 2.4e-17
                     GGSEEEEEEEEEE..TTE...........EEEEEEE-SS--HHHHHHHHHHHG....GGEECTTCE....SS---HHHHTTEEE-TT-EE..EEE CS
  DNA_ligase_A_C   2 gglvgslllgvyd..dgk...........leyvgkvgtGfsdaeleelrkklk....elerkkppf....aekvpeeekrdvWvePelvv..eVk 73 
                     +++++++l+gv+   +++           +  ++kvg+G++++ l +lr +lk    +++++  p+    + + + +++++vW eP+l+   +V+
      KOO22179.1 460 NDGISTFLCGVRApsSERaklgvppdmplFYPFAKVGSGYTHEALVDLRSQLKsaerPWHKSARPLhlcgWIPNKTDDEPHVWYEPTLSKvmQVA 554
                     67899******9987444789999999*9***********************98888888888888997666666666777*****985555*** PP

                     ESEEECTSSSTT...EECT-EEEEE-TTS CS
  DNA_ligase_A_C  74 faeitasgkyka...slRfPrfkrlReDk 99 
                     + ei +++++     +lRfPr+ rlR+Dk
      KOO22179.1 555 AYEIVKGDAFMPaglTLRFPRLARLRDDK 583
                     ********87769***************8 PP

>> BRCT_3  BRCA1 C Terminus (BRCT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.1   5.3e-06     0.014      20      86 ..     711     779 ..     706     784 .. 0.74

  Alignments for each domain:
  == domain 1  score: 15.5 bits;  conditional E-value: 5.3e-06
      BRCT_3  20 lWseilklaGaavvkkekseaee..islgkldvvvtdsscpeevlkkaeqlkipvvSteWviQsLIege 86 
                   +++lk+ Ga+ v+++ +++    ++++ ++ +  +++      +k ++ + +vv+ eW++Q+ +e++
  KOO22179.1 711 ALKRLLKQLGAERVDANVNKETTlvVDADPINSMSMQTKNLVADCEKEQRTQFNVVAAEWLVQCFLEKQ 779
                 6688999999999999988887766666666666333333333345667889*************9976 PP

>> SopD  Salmonella outer protein D
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   0.1   7.5e-06     0.019       9     154 ..      72     216 ..      62     253 .. 0.82

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 7.5e-06
                 XXXXXXXXXXXXXX....XXX.XX.XXXXXXGGGCHHHHHHCHHHHHHHHHHHHHHHHC-----------B--HHHHHHHHHHHHHHCS-CCCCCCEEE CS
        SopD   9 nrqnyelnesrlar....lls.ad.kekalymgvwdkvkdhfraekkdevlevlyslihgqereeqaelevdvediekiyafkrlkelanpaqqdlfvi 101
                 +r ny+l +  lar    lls +d  ++a  m  w k    f  + + +  ev+ys+i+g     ++ + v   +++ +  + +l +  n   +++  +
  KOO22179.1  72 ERPNYKLKHKNLARkyvdLLSlPDsSDDAQKMLNWKKPSAGFTRNEQGNFPEVVYSVIKGRCTVTKGHITV--GEVNAL--LDELAQAQNLEAKERVLM 166
                 578********998666667755525789******************************988888887655..566655..56788888888999**** PP

                 EE-TTSSEEEEEETTEEEEEEEHHHH.TT--TTS------HHHHHHHHHHHHHH CS
        SopD 102 kldasqtqvllevddkvidksnlkdl.lnvsedavikvmeeeeeelflkiciki 154
                 k+ ++ t      +++ + +  lkd+ + + ed+++  ++ + +el+  +c   
  KOO22179.1 167 KMHTTTTAQ----EQRWLLRIILKDMhIGMKEDSILTMLHADAKELYNSVCDLH 216
                 *99888754....555666666777646899****************9999765 PP

>> BRCT  BRCA1 C Terminus (BRCT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   5.6e-05      0.14      21      79 .]     708     775 ..     703     775 .. 0.77

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 5.6e-05
                 HHHHHHHHHHHTTCEE.ESSCSTTSSEEEESSS...HSHHHH.....HHHHHHTTSEEEETHHHHHHH CS
        BRCT  21 trdeleelikehGGkv.ttevskktthlvvgep...esrslk.....ylealklnipivheewlldci 79 
                   d l++l+k +G+      v+k+tt++v  +p    s ++k     +++ ++ ++ +v  ewl++c+
  KOO22179.1 708 SADALKRLLKQLGAERvDANVNKETTLVVDADPinsMSMQTKnlvadCEKEQRTQFNVVAAEWLVQCF 775
                 56899*********983556677777777444467744444466677********************6 PP

>> mRNA_cap_enzyme  mRNA capping enzyme, catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.6   0.2       3.2   8.1e+03      12      29 ..     257     274 ..     252     274 .. 0.83
   2 ?   -2.3   0.0       1.3   3.4e+03      70      81 ..     290     301 ..     283     306 .. 0.82
   3 ?   10.6   0.0   0.00014      0.37      90     195 .]     332     433 ..     324     433 .. 0.68

  Alignments for each domain:
  == domain 1  score: -3.6 bits;  conditional E-value: 3.2
                      HHHHS-EEEEEEESSEEE CS
  mRNA_cap_enzyme  12 kLkqkkYvvseKaDGiRy 29 
                        k+ +Yv+  K DG Ry
       KOO22179.1 257 MYKKGDYVAEYKLDGERY 274
                      557789*********998 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 1.3
                      GGSEEEEEEEEE CS
  mRNA_cap_enzyme  70 ldetllDgElvi 81 
                      l+e +lDgE+++
       KOO22179.1 290 LRECILDGEMMV 301
                      6789******97 PP

  == domain 3  score: 10.6 bits;  conditional E-value: 0.00014
                      EEEEEEEEEEEETTEEGTTSBHHHHHHHHHHHTHHHHHHHHHTTCCCCTTSSSEE..EE--EEETTHHHHHHHHCCCCCTTSTEEEEEEEESSS CS
  mRNA_cap_enzyme  90 elryliyDivaingvtvaeeplskRleilkkelikprneekktglletdkepfsv..rlKefilleavaklleekfikklshesDGLIfqpvke 181
                      ++ y+++D+v +ng+ +a+ p+ +R e+l+     p+ + k + +   ++  ++   + K     ++  + +++ + + ++    G ++++ ++
       KOO22179.1 332 QPCYIVFDVVWLNGKGLASLPMRERRELLR-----PYVRWKAHSMQLSEQVVVEPhpQGKPPSEDHT--IEIMNWLDRAMAKGYEGVMLKSLNA 418
                      789**********************66554.....44444433333333333333004455444444..4458888888999999999999999 PP

                      B--SE.EEEEEEEE- CS
  mRNA_cap_enzyme 182 pyvag.rdsdllKwK 195
                      pyv+g rd+d  K+K
       KOO22179.1 419 PYVPGsRDTDWQKLK 433
                      999996676666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1028 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       648  (0.0361426); expected 358.6 (0.02)
Passed bias filter:                      495  (0.0276089); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.76u 0.31s 00:00:01.07 Elapsed: 00:00:00.47
# Mc/sec: 6559.14
//
Query:       KOO22180.1  [L=561]
Description: cleft lip and palate transmembrane protein 1-like protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.3e-89  300.4   0.0    3.2e-89  299.9   0.0    1.1  1  CLPTM1    Cleft lip and palate transmembrane protein 1 (CLPTM
     0.0094   15.7   0.5       0.17   11.6   0.0    2.5  2  PQ-loop   PQ loop repeat


Domain annotation for each model (and alignments):
>> CLPTM1  Cleft lip and palate transmembrane protein 1 (CLPTM1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  299.9   0.0   3.6e-93   3.2e-89      37     427 ..      18     414 ..       5     415 .. 0.92

  Alignments for each domain:
  == domain 1  score: 299.9 bits;  conditional E-value: 3.6e-93
      CLPTM1  37 tpkclapllkegekldlsvyvsesee.feklkseeklvlkeknlkygdweesreveltiklpkevqnNgtlyahvfltksgssldpkdekydkksvvhk 134
                  p++ a+++++g+kl+l+v++s+s+  f++++++++l+++ k+l y++  +s e++++++l++++ +Ngt++ah+f+tk+g+s+dp++ +yd+  +++ 
  KOO22180.1  18 RPTHHANVFAAGDKLELRVFLSPSRApFTDFNNTDALLWSDKSLVYSEAGSSLEKTVHVPLTERLLSNGTMFAHMFITKAGASPDPQHGSYDRLATTSN 116
                 467889****************96655****9999**************************************************************** PP

      CLPTM1 135 tkqLtkylpkkkekktknLlkekeeeeeee.........ekeekpv..ivsywkpnltlslvsdktalskeqlppevaeyikleetg..gqYlPilfvn 220
                 +  L+ + ++ + +  +nLl+++ +  e+e         ++ +     +vs+wkp+l+l+l+ d+++++  ++pp +++y++ ++    + + P+++vn
  KOO22180.1 117 SFDLVGFSKRLQPRGLYNLLTGEPAPWETElrrglaeaeAAGR--SgeFVSFWKPKLHLQLLVDTESYELDKMPPLLHSYLHHHRLMsgHRFRPLIYVN 213
                 *************************888888888876543333..2559*********************************88766679********* PP

      CLPTM1 221 efwqlkkdlveinetvke....lpLtitlsplslwklqlyasmeeslkqqakl.gfsekeideiKeilldtnpyLLalTivVsllHsvfefLAFknDis 314
                 e+ ++k++ v+in++       lpLti++spl   ++q ++++++s+k+++++ g seke ++++++++ t+p+LL +T++Vs++H++f++LAFknD+s
  KOO22180.1 214 ELTTMKSHWVAINASKPLpgggLPLTISYSPLPTRRFQWMVNLQHSFKMNEETlGISEKESEDLRGMFVHTSPLLLYTTVAVSAVHLLFDVLAFKNDVS 312
                 ***************9544555****************************9888********************************************* PP

      CLPTM1 315 fWrkkksleGlSvrsilanvfsqlvifLYLlDneTSwlilisqgiGllielWKitkvvkvrlseegslprlkfedkeklsesekkTkeYDeiAfkYLsy 413
                 fW + +s+eGlS r++l+n  ++++i+LYL+++++Swl+ i++ + l++ + Ki+k + vr +         +  +++ +++  +T+e D++AfkYLs 
  KOO22180.1 313 FWSSVDSMEGLSSRTLLLNQGMEFIILLYLFEEDASWLVKITSLFTLVLGFFKIFKSFSVRSRG--------VA-RKDSKQA--ETDEIDRLAFKYLSP 400
                 ************************************************************9977........22.2333333..79************* PP

      CLPTM1 414 vlvPlligyaiYSL 427
                  l+ l++gy+  SL
  KOO22180.1 401 PLLLLIAGYSGHSL 414
                 **********9999 PP

>> PQ-loop  PQ loop repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.5   0.1     0.028   2.5e+02      29      59 ..     319     349 ..     318     351 .. 0.84
   2 !   11.6   0.0     2e-05      0.17      12      39 ..     437     464 ..     428     471 .. 0.87

  Alignments for each domain:
  == domain 1  score: 1.5 bits;  conditional E-value: 0.028
     PQ-loop  29 SteGlSilflllwllGdilsllylilngfpp 59 
                 S+eGlS  +lll+    ++ llyl+ +++++
  KOO22180.1 319 SMEGLSSRTLLLNQGMEFIILLYLFEEDASW 349
                 89***********998888888888766666 PP

  == domain 2  score: 11.6 bits;  conditional E-value: 2e-05
     PQ-loop  12 lwlvsyiPQiikNykrkSteGlSilfll 39 
                 + +++  PQ+  Ny+ kS+ +l+  f++
  KOO22180.1 437 GGFIVMTPQLFINYRLKSVAHLNWKFFM 464
                 5678889**************9988886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (561 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       308  (0.0171789); expected 358.6 (0.02)
Passed bias filter:                      234  (0.0130515); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.50u 0.26s 00:00:00.76 Elapsed: 00:00:00.42
# Mc/sec: 3967.44
//
Query:       KOO22181.1  [L=806]
Description: hypothetical protein Ctob_005341 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
      2e-10   41.5   0.1    4.1e-10   40.5   0.1    1.5  1  Metallophos  Calcineurin-like phosphoesterase
  ------ inclusion threshold ------
       0.05   13.2   4.2       0.11   12.1   4.2    1.5  1  DUF3157      Protein of unknown function (DUF3157)


Domain annotation for each model (and alignments):
>> Metallophos  Calcineurin-like phosphoesterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.5   0.1   4.5e-14   4.1e-10       1     202 [.      92     327 ..      92     329 .. 0.64

  Alignments for each domain:
  == domain 1  score: 40.5 bits;  conditional E-value: 4.5e-14
                  EEEEEEESBTB.....TTCCTHHHHHHHHHHHHHHHTTESEEEEESTSSSSS...........HHHHHHHHH.HHHHHHHTSEEEEEC-TTS..CHHH CS
  Metallophos   1 lrilvigDlHl.....algggqlddllkllddllreekpdlvllaGDlvdrg...........dlekellel.laalvkypipvylllGNHe..gfee 79 
                  ++++++gDlHl     ++ + + + +l +++d++++  + +++ +GDl +                +e+ el  ++l ++++p+ ++ GNH+  g   
   KOO22181.1  92 FTVAILGDLHLdprkmEDYYKGREHFLPIFEDAKSRGVATALVSLGDLGESKsvrpeetqelfAGTTECHELaAEFLSSFGVPYEVIGGNHDleG--- 186
                  79***********88877778888888888999999666777778**88888876555555553333344443466666699**********541... PP

                  HHHHHHHHHHHH.HHHHEHHHCEEETSEEEEEETTEEEEEEEESECEEETHHHHHHHHHHHSCHHHHCCHHHHHH...HHHHTTCSEEEEEESSESS. CS
  Metallophos  80 ellnkygylgif.sepwrsdaevfnnlplaslgsgslkvlllhGgspellvsldklgslnleleapepgdewlkd...lekrekadwvivlgHsply. 172
                   + ++ +++++  +    +++  +++l  ++  +   k+ll+  g    ++ + k++  ++e  +++++  w++d   +   +++  ++v++H p+  
   KOO22181.1 187 -IDEFTTDEANLaAFCRIHKKPQMQFLRQIA--D---KTLLVGLG----STVFRKARYTSHEVIIDDEQMAWFEDvvsSHPSTDGWKIFVFTHAPPIg 274
                  .333333333333222222233334444433..2...44444444....24455566666666666666********777777777778888999999 PP

                  ....................CSSSCSCCHHHHH....HHHHHTT.ESEEEEESSS CS
  Metallophos 173 ....................rgsgylfgdeale....dllkkyg.vdlvisGHtH 202
                                      + +g   ++ a      +l +k++ +++++sGH H
   KOO22181.1 275 sglrvlqenhvvngccwinhS-GGAKSDPAA-TtkfiELVRKHRcIKAWFSGHFH 327
                  999999999999888888632.222222222.2456666666669********99 PP

>> DUF3157  Protein of unknown function (DUF3157)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   4.2   1.2e-05      0.11      22     103 ..     695     779 ..     676     790 .. 0.77

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 1.2e-05
     DUF3157  22 vvtLenGae.vrLndDFtWeYvilet...alketaaeqtseavaavaaaavattpvvkksvatliasalakpellkslaksGvkvs 103
                 ++ L++Ga+ v L+  F    ++  +   +++++a+ q + avaavaa+a+a +pv +++++t ++ a++++ +   + + Gv ++
  KOO22181.1 695 LLALAEGAKeVTLQ-QFVMLVLFRRPvraDAPAKAPAQAKAAVAAVAAVAPAQAPVPSQASTTAVKEAVKEAVVAATTNQRGVSLT 779
                 56666666425554.34443333333777899999***************************************9999999*9876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (806 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       751  (0.0418874); expected 358.6 (0.02)
Passed bias filter:                      505  (0.0281667); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.68u 0.31s 00:00:00.99 Elapsed: 00:00:00.47
# Mc/sec: 5188.05
//
Query:       KOO22182.1  [L=557]
Description: protein chromosomal-like protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    9.8e-15   55.2   0.0    1.6e-14   54.5   0.0    1.4  1  AAA              ATPase family associated with various cellul
    5.6e-06   25.9   0.1    2.4e-05   23.9   0.0    2.1  2  EF-hand_6        EF-hand domain
    7.4e-06   25.2   0.4    2.2e-05   23.7   0.4    1.8  1  EF-hand_5        EF hand
    1.1e-05   25.7   0.1    0.00016   22.0   0.0    2.4  2  EF-hand_7        EF-hand domain pair
    1.2e-05   24.5   0.3     0.0001   21.6   0.1    2.4  2  EF-hand_1        EF hand
    3.7e-05   23.2   0.2       0.03   13.7   0.1    2.3  2  Mg_chelatase     Magnesium chelatase, subunit ChlI
    0.00014   22.1   0.0      0.039   14.2   0.0    2.5  2  AAA_22           AAA domain
    0.00026   20.8   0.0      0.001   18.9   0.0    1.9  1  RuvB_N           Holliday junction DNA helicase RuvB P-loop d
    0.00052   20.4   0.3     0.0017   18.8   0.0    2.0  2  AAA_16           AAA ATPase domain
     0.0024   17.6   0.0      0.033   13.9   0.0    2.4  2  Sigma54_activat  Sigma-54 interaction domain
     0.0036   17.4   0.0     0.0067   16.6   0.0    1.4  1  AAA_2            AAA domain (Cdc48 subfamily)
     0.0049   16.7   0.0     0.0077   16.0   0.0    1.2  1  Viral_helicase1  Viral (Superfamily 1) RNA helicase
     0.0066   16.5   0.0      0.017   15.1   0.0    1.8  1  AAA_5            AAA domain (dynein-related subfamily)
  ------ inclusion threshold ------
      0.014   14.6   0.0       0.17   11.1   0.0    2.1  1  DUF2075          Uncharacterized conserved protein (DUF2075)
      0.036   14.0   0.0       0.56   10.1   0.0    2.1  2  APS_kinase       Adenylylsulphate kinase
      0.062   13.3   0.0       0.12   12.4   0.0    1.5  1  TsaE             Threonylcarbamoyl adenosine biosynthesis pro
      0.075   13.6   0.0       0.14   12.7   0.0    1.5  1  AAA_18           AAA domain
      0.083   12.8   0.0        0.5   10.2   0.0    2.3  2  EF-hand_8        EF-hand domain pair
      0.091   12.0   0.1       0.44    9.8   0.0    2.0  2  Zeta_toxin       Zeta toxin
       0.17   11.8   0.0        0.3   11.0   0.0    1.4  1  NTPase_1         NTPase
       0.18   11.0   0.0        4.2    6.5   0.0    2.2  2  DUF815           Protein of unknown function (DUF815)


Domain annotation for each model (and alignments):
>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.5   0.0   1.9e-17   1.6e-14       1     128 [.     326     454 ..     326     458 .. 0.73

  Alignments for each domain:
  == domain 1  score: 54.5 bits;  conditional E-value: 1.9e-17
                 EEEESSTTSSHHHHHHHHHHHHT.......HEEEEEETTTCSSSSTTHHHHHHHHHHHHHHHTSTSEEEEEETGGGHHHHHTTCCCHHHHHHHHHHHHH CS
         AAA   1 vllyGppGtGKTllakavakelg.......vefleisgsellskyvgesekkirelfkeakekakpsilfiDEidalaksrsgseseeeervvnqLlte 92 
                 ++++G+pG+GKT++a+ va+ l+         f+e++ ++l+ +++g++  k+re ++ea   a   +lfiDE+++l++s+ ++ +++++   ++L + 
  KOO22182.1 326 MVFTGNPGCGKTSIARLVARLLHelgavrrPAFVEVQRTDLVASHIGQTGPKTREKINEA---A-GGVLFIDEAYRLTSSS-DTGKDFGR---EALEEI 416
                 689******************84444544467*************************987...3.58**********9888.45555555...555556 PP

                 HHHTTTSSSTEEEEEEESS..GGGSTHHHH.S.TTSSEEE CS
         AAA  93 ldgvkkkeskvivigatnr..pdkldpall.r.gRfdrki 128
                 ++++++ +   +vi+a++   ++++ +a   + +Rf + +
  KOO22182.1 417 MKDLTTGD--PVVIAAGYPddMKRFLDANEgLrRRFGMTF 454
                 66666643..377777765445555555443335666655 PP

>> EF-hand_6  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.9   0.0   2.9e-08   2.4e-05       2      28 ..     120     146 ..     119     163 .. 0.91
   2 ?   -2.0   0.0       5.6   4.8e+03      16      27 ..     172     183 ..     172     189 .. 0.86

  Alignments for each domain:
  == domain 1  score: 23.9 bits;  conditional E-value: 2.9e-08
   EF-hand_6   2 lreaFklfDkdgdGkidaeElrkalrk 28 
                 l++aF++fD dgdG+++aeE+  al++
  KOO22182.1 120 LKAAFDKFDLDGDGELSAEEVDLALQQ 146
                 789******************999986 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 5.6
   EF-hand_6  16 kidaeElrkalr 27 
                 +++ +E+ ++ r
  KOO22182.1 172 TLSESEFLAMVR 183
                 6899****9998 PP

>> EF-hand_5  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.7   0.4   2.6e-08   2.2e-05       1      20 [.     120     139 ..     120     144 .. 0.95

  Alignments for each domain:
  == domain 1  score: 23.7 bits;  conditional E-value: 2.6e-08
                 HHHHHHHH-SS-SSCE-HHH CS
   EF-hand_5   1 lkdtFqaiDlNgDGkIskeE 20 
                 lk++F+++Dl+gDG +s+eE
  KOO22182.1 120 LKAAFDKFDLDGDGELSAEE 139
                 7899***************9 PP

>> EF-hand_7  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.0   0.0   1.9e-07   0.00016       3      71 .]     119     183 ..     117     183 .. 0.88
   2 ?    0.8   0.0      0.81   6.9e+02      36      55 ..     403     422 ..     362     425 .. 0.77

  Alignments for each domain:
  == domain 1  score: 22.0 bits;  conditional E-value: 1.9e-07
   EF-hand_7   3 klkeaFkelDtdgdgyldkeellrllrkifqgagegsklsdeelellfkefDtdkdG..visfdEFlklyr 71 
                  lk aF+++D dgdg l+ ee+  +l+         +++s++++ +++++  t++    ++s +EFl+++r
  KOO22182.1 119 SLKAAFDKFDLDGDGELSAEEVDLALQ------QVSVHFSPQQVHAFMRMGRTSDEAapTLSESEFLAMVR 183
                 58999******************7888......9****************766666578999999999875 PP

  == domain 2  score: 0.8 bits;  conditional E-value: 0.81
   EF-hand_7  36 gegsklsdeelellfkefDt 55 
                 ++g+++ +e+le+++k++ t
  KOO22182.1 403 DTGKDFGREALEEIMKDLTT 422
                 88999999********9876 PP

>> EF-hand_1  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.6   0.1   1.2e-07    0.0001       2      26 ..     120     144 ..     119     147 .. 0.88
   2 ?    0.3   0.0      0.75   6.4e+02      16      28 ..     172     184 ..     172     185 .. 0.86

  Alignments for each domain:
  == domain 1  score: 21.6 bits;  conditional E-value: 1.2e-07
                 HHHHHHHHTTTSSSEEEHHHHHHHH CS
   EF-hand_1   2 lkeiFrefDkDgdGkIdfeEfkell 26 
                 lk +F++fD DgdG ++ eE   +l
  KOO22182.1 120 LKAAFDKFDLDGDGELSAEEVDLAL 144
                 799*****************87666 PP

  == domain 2  score: 0.3 bits;  conditional E-value: 0.75
                 EEEHHHHHHHHHH CS
   EF-hand_1  16 kIdfeEfkellkk 28 
                 +++ +Ef++++++
  KOO22182.1 172 TLSESEFLAMVRR 184
                 5899******987 PP

>> Mg_chelatase  Magnesium chelatase, subunit ChlI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.7   0.1   3.5e-05      0.03      20      49 ..     321     350 ..     307     353 .. 0.87
   2 !    8.7   0.0    0.0012         1      68     119 ..     348     399 ..     342     418 .. 0.85

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 3.5e-05
  Mg_chelatase  20 aGgHnlllvGppGsGKtmlakrlpsllppl 49 
                    G  +++++G+pG+GKt +a+ ++ ll +l
    KOO22182.1 321 VGPLHMVFTGNPGCGKTSIARLVARLLHEL 350
                   57789******************9999876 PP

  == domain 2  score: 8.7 bits;  conditional E-value: 0.0012
  Mg_chelatase  68 eeekllkrrpfraphhsaskaalvGggskpkpGeislahnGvLfLDElpefk 119
                   +e ++++r+ f++  ++   a+ +G     +  +i  a  GvLf+DE+  ++
    KOO22182.1 348 HELGAVRRPAFVEVQRTDLVASHIGQTGPKTREKINEAAGGVLFIDEAYRLT 399
                   5567789999****************999999***************87665 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.2   0.0   4.6e-05     0.039       6      43 ..     324     359 ..     320     374 .. 0.76
   2 ?    5.2   0.0     0.027        23      83     116 ..     379     421 ..     364     439 .. 0.77

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 4.6e-05
      AAA_22   6 gilvvtGesGtGKTtllrrlleqldeeakaee...erpevv 43 
                  ++v tG +G+GKT  +r +++ l+e         +rp +v
  KOO22182.1 324 LHMVFTGNPGCGKTSIARLVARLLHE-----LgavRRPAFV 359
                 5899******************9964.....1223444444 PP

  == domain 2  score: 5.2 bits;  conditional E-value: 0.027
      AAA_22  83 eqalraravielliiDEaqhlr..s.......eealeeL.rsll 116
                 ++ ++++a  ++l iDEa +l+  s        ealee+ ++l 
  KOO22182.1 379 REKINEAAG-GVLFIDEAYRLTssSdtgkdfgREALEEImKDLT 421
                 566777888.9**********87526778888999999855544 PP

>> RuvB_N  Holliday junction DNA helicase RuvB P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.9   0.0   1.2e-06     0.001      35     101 ..     325     403 ..     302     430 .. 0.63

  Alignments for each domain:
  == domain 1  score: 18.9 bits;  conditional E-value: 1.2e-06
      RuvB_N  35 hvllyGpPGlGkttlakiiakelgvklkitsgPvl.e.kagdlaa.ll..........tnleekdvlfideihrlsrave 101
                 h++++G PG Gkt++a+++a+ l+  l +   P+  e + +dl+a  +           n  ++ vlfide +rl+++ +
  KOO22182.1 325 HMVFTGNPGCGKTSIARLVARLLHE-LGAVRRPAFvEvQRTDLVAsHIgqtgpktrekINEAAGGVLFIDEAYRLTSSSD 403
                 9*******************86653.333333332121344555523322222111112334568*********987654 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.2       7.2   6.2e+03      84     117 ..      67     102 ..      49     147 .. 0.48
   2 !   18.8   0.0     2e-06    0.0017      22      88 ..     321     373 ..     304     459 .. 0.58

  Alignments for each domain:
  == domain 1  score: -2.6 bits;  conditional E-value: 7.2
      AAA_16  84 qlldeaesaeleawrekleealaavpelagaea..s 117
                 +l++  ++ +  +  ++ +++++  p+l+++ +   
  KOO22182.1  67 ALGSLRATGADKENGAEVTSQIEYNPPLRRQNStpA 102
                 333333333333333333333333333333322221 PP

  == domain 2  score: 18.8 bits;  conditional E-value: 2e-06
      AAA_16  22 grpelvllsGesGvGKsslvrellralekdggiflrgkcdqlesaipysalaqalareellrqllde 88 
                  +p  ++++G++G+GK+s++r ++r l +  g + r              ++++  r +l++    +
  KOO22182.1 321 VGPLHMVFTGNPGCGKTSIARLVARLLHEL-GAVRRPA------------FVEVQ-RTDLVASHIGQ 373
                 5678999*****************766554.2222222............23333.22333333333 PP

>> Sigma54_activat  Sigma-54 interaction domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.0       4.8   4.1e+03      46      90 ..      92     136 ..      61     160 .. 0.67
   2 !   13.9   0.0   3.8e-05     0.033      22     107 ..     323     400 ..     313     404 .. 0.77

  Alignments for each domain:
  == domain 1  score: -2.7 bits;  conditional E-value: 4.8
                      STTTTS-EEEEETTTS-TTCHHHHHHEBSSSSSTTTSS-BEHHHH CS
  Sigma54_activat  46 skrkekpfvavncaaipeelleseLFGhekGaFtGAekekkGlfe 90 
                       + ++++    + +a  e+l+++e +   k aF   + +  G ++
       KOO22182.1  92 PPLRRQNSTPAEASAALERLIHAEPYDSLKAAFDKFDLDGDGELS 136
                      333445556666777778888888888888888887777777764 PP

  == domain 2  score: 13.9 bits;  conditional E-value: 3.8e-05
                      SS-EEEECSTTSSHHHHHHHH....HHHSTTTTS-EEEEETTTS-TTCHHHHHHEBSSSSSTTTSS-BEHHHHHTTTSEEEEETGGGS-H CS
  Sigma54_activat  22 dlsvlitGesGtGKellarai....heaskrkekpfvavncaaipeelleseLFGhekGaFtGAekekkGlfekadgGtlfLDeigelpl 107
                      +l+++ tG+ G+GK+ +ar++    he    ++  fv+v+ +    +l++s++ G      tG ++++  ++++a gG+lf+De  +l+ 
       KOO22182.1 323 PLHMVFTGNPGCGKTSIARLVarllHELGAVRRPAFVEVQRT----DLVASHI-G-----QTGPKTRE--KINEAAGGVLFIDEAYRLTS 400
                      588999********9776554333388999999999999865....5677765.2.....47877766..799***********988865 PP

>> AAA_2  AAA domain (Cdc48 subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   0.0   7.8e-06    0.0067       6      97 ..     326     415 ..     323     421 .. 0.88

  Alignments for each domain:
  == domain 1  score: 16.6 bits;  conditional E-value: 7.8e-06
                 EEEE--TTSSHHHHHHHHHHHTT-....-EEEEEGGG-------THHHHHHHHHTTT-HHHHTTSEEEEETGGG-------------HHHHH CS
       AAA_2   6 illlgptgvGktelakalaellfvkkekkliradaselleeeevehlvsrligappgyvgaeegGivllDEidKihpkessgadvSregVqr 97 
                 + ++g+ g+Gkt +a+ +a+ll+  +  ++ r    e++  + v++ + +   +    ++ + gG++++DE  + ++++ +g+d  re   +
  KOO22182.1 326 MVFTGNPGCGKTSIARLVARLLH--ELGAVRRPAFVEVQRTDLVASHIGQTGPKTREKINEAAGGVLFIDEAYRLTSSSDTGKDFGREALEE 415
                 6799******************8..577888888899999999999999999999999*****************99999999999986555 PP

>> Viral_helicase1  Viral (Superfamily 1) RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.0     9e-06    0.0077       2      75 ..     327     399 ..     326     402 .. 0.78

  Alignments for each domain:
  == domain 1  score: 16.0 bits;  conditional E-value: 9e-06
  Viral_helicase1   2 vvhGvpGcGKStlirkllrts.liltvnrptaelltegkpklpnlsvrtvdsflmalvkstkgkililDEylllh 75 
                      v  G pGcGK+++ r ++r       v rp+++ + +  + + ++ + t  +  ++  +   g +l++DE+++l+
       KOO22182.1 327 VFTGNPGCGKTSIARLVARLLhELGAVRRPAFVEVQRT-DLVASHIGQTGPKTREKINEA-AGGVLFIDEAYRLT 399
                      67899*******88888888876778888877777777.577777777777766666664.699********987 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.0     2e-05     0.017       1      29 [.     325     359 ..     325     402 .. 0.76

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 2e-05
                 EEEEE--SSSSHHHHHHHGGGGB......S--EEE CS
       AAA_5   1 dvlLvGppGtgKselaerlaaal......nrevey 29 
                 +++  G+pG+gK+++a+ +a++l      +r+ ++
  KOO22182.1 325 HMVFTGNPGCGKTSIARLVARLLhelgavRRPAFV 359
                 67899*****************9766555555554 PP

>> DUF2075  Uncharacterized conserved protein (DUF2075)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   0.00019      0.17       7     122 ..     329     419 ..     325     430 .. 0.62

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00019
     DUF2075   7 tGvaGtGKtvvllnllaeleddeeertavylsvNhplvlvlrealakkeekkkkkeafeklssfinnlsefkkaeekkeepkedvvivDEAhrlltksd 105
                 tG++G GKt ++  ++  l       ++  +++  ++v+v r +l  +     ++++  k ++ in++                v+ +DEA rl+++sd
  KOO22182.1 329 TGNPGCGKTSIARLVARLL-------HELGAVRRPAFVEVQRTDLVASH----IGQTGPKTREKINEAA-------------GGVLFIDEAYRLTSSSD 403
                 6666666666654333333.......33333444444444444444333....4444466666666655.............889***********999 PP

     DUF2075 106 qaekqseenqlkelmkr 122
                   +++ +++ l+e+mk 
  KOO22182.1 404 TGKDF-GREALEEIMKD 419
                 98887.9999***9996 PP

>> APS_kinase  Adenylylsulphate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.0   0.00066      0.56       4      31 ..     325     352 ..     322     380 .. 0.88
   2 ?    1.5   0.0      0.29   2.5e+02      37     101 ..     479     542 ..     462     551 .. 0.83

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.00066
                 EEEEESSTTSSHHHHHHHHHHHHHHTT- CS
  APS_kinase   4 vvwltGlsgsGKstianalekkLvekgi 31 
                  + +tG  g GK++ia+ +++ L+e g 
  KOO22182.1 325 HMVFTGNPGCGKTSIARLVARLLHELGA 352
                 5789*******************99884 PP

  == domain 2  score: 1.5 bits;  conditional E-value: 0.29
                 EHHHHTTTTTTT--SSHHHHHHHHHHHHHHHHHHHHTT-EEEEE----SHHHHHHHHHHHHCHTE CS
  APS_kinase  37 dGdnvRhgLnkdLgfseedRkenirrvaevaklladaglivlvafisPyreeReaarelleealk 101
                  Gd v  +    L  ++ d +   ++ + va++l+++++ v  a +sP + +  + ++l ++ l+
  KOO22182.1 479 LGDGVDVETVAALIAEHSDAAWRAKQNGGVAERLSRTAMQVQDARLSPTKMTGAQYKQLASQ-LE 542
                 488888888889999999999999999**********************9999999888775.45 PP

>> TsaE  Threonylcarbamoyl adenosine biosynthesis protein TsaE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   0.00014      0.12      20      58 ..     324     363 ..     296     439 .. 0.84

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 0.00014
                 EEEEEEESTTSSHHHHHHHHHHHTT--.----TTTTSEEE CS
        TsaE  20 dvilLeGdLGaGKTtlvrglakalgve.evkSPTFtlvee 58 
                   ++++G+ G+GKT ++r +a+ l+   +v+ P F+ v++
  KOO22182.1 324 LHMVFTGNPGCGKTSIARLVARLLHELgAVRRPAFVEVQR 363
                 3499******************9965589******87765 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   0.00016      0.14       3      24 ..     328     350 ..     326     423 .. 0.84

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 0.00016
      AAA_18   3 ltGtpGvGKttlakeLskrl.gf 24 
                  tG pG+GKt++a+ ++++l ++
  KOO22182.1 328 FTGNPGCGKTSIARLVARLLhEL 350
                 79****************98665 PP

>> EF-hand_8  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.0   0.00059       0.5      23      47 ..     114     139 ..     100     140 .. 0.76
   2 ?   -1.3   0.0       2.3     2e+03      22      33 ..     172     183 ..     148     185 .. 0.64

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.00059
   EF-hand_8  23 lseee.vdilfrefDtdgdGkisfeE 47 
                   +++ + + f++fD+dgdG +s eE
  KOO22182.1 114 AEPYDsLKAAFDKFDLDGDGELSAEE 139
                 5566667788************9888 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 2.3
   EF-hand_8  22 glseeevdilfr 33 
                 +lse+e+ +++r
  KOO22182.1 172 TLSESEFLAMVR 183
                 455555555554 PP

>> Zeta_toxin  Zeta toxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   0.0   0.00051      0.44      16      41 ..     323     348 ..     320     370 .. 0.78
   2 ?   -1.2   0.1       1.2     1e+03     141     180 ..     512     551 ..     498     554 .. 0.78

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.00051
  Zeta_toxin  16 PklillgGqpGAGKselaellkdele 41 
                 P  ++  G pG+GK+++a+l+++ l+
  KOO22182.1 323 PLHMVFTGNPGCGKTSIARLVARLLH 348
                 6778889*************998775 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 1.2
  Zeta_toxin 141 ldRyeeevaegRlvpkeehdeafeglresvealeeekqld 180
                 l+R   +v+ +Rl p +   +++++l++++e  +++++++
  KOO22182.1 512 LSRTAMQVQDARLSPTKMTGAQYKQLASQLELSDVATAAE 551
                 56667777779***************99998777666665 PP

>> NTPase_1  NTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   0.00036       0.3       1      27 [.     325     351 ..     325     359 .. 0.90

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00036
                 EEEEE--TTSSHHHHHHHHHHHH...G CS
    NTPase_1   1 kvfiTGppGvGKtTlvkkvlellkssg 27 
                 +++ TG+pG GKt + + v++ll++ g
  KOO22182.1 325 HMVFTGNPGCGKTSIARLVARLLHELG 351
                 6789******************98876 PP

>> DUF815  Protein of unknown function (DUF815)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.5   0.0    0.0049       4.2      55      93 ..     325     367 ..     300     387 .. 0.87
   2 ?    1.9   0.0      0.12     1e+02     182     218 ..     446     486 ..     439     522 .. 0.63

  Alignments for each domain:
  == domain 1  score: 6.5 bits;  conditional E-value: 0.0049
      DUF815  55 nvLLwGarGtGKSslvkallneyaeeg....Lrlievekedlk 93 
                 +++++G+ G+GK s+ + + + ++e g     +++ev+++dl 
  KOO22182.1 325 HMVFTGNPGCGKTSIARLVARLLHELGavrrPAFVEVQRTDLV 367
                 7899**********99988887777777555679999999986 PP

  == domain 2  score: 1.9 bits;  conditional E-value: 0.12
      DUF815 182 LsdRFGlwlgFykldqeeYleiveklakklglelek....e 218
                 L  RFG+++ F  ++ +e  ++    +++lg +l +    e
  KOO22182.1 446 LRRRFGMTFDFPDFSVDELAQMTLLKIQTLGFRLGDgvdvE 486
                 667**************999998888877766665544442 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (557 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       455  (0.0253779); expected 358.6 (0.02)
Passed bias filter:                      373  (0.0208043); expected 358.6 (0.02)
Passed Vit filter:                        82  (0.0045736); expected 17.9 (0.001)
Passed Fwd filter:                        21  (0.00117129); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              21  [number of targets reported over threshold]
# CPU time: 0.60u 0.27s 00:00:00.87 Elapsed: 00:00:00.43
# Mc/sec: 3872.93
//
Query:       KOO22183.1  [L=302]
Description: hypothetical protein Ctob_005336 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    6.9e-21   72.2  15.5    2.8e-07   29.6   1.5    4.5  4  EF-hand_1      EF hand
    1.7e-20   71.1   9.3    4.9e-07   29.2   0.3    4.5  4  EF-hand_6      EF-hand domain
      6e-20   69.8   9.1    1.4e-07   30.7   0.3    4.4  4  EF-hand_5      EF hand
    3.3e-17   62.7  11.2    1.8e-08   34.7   0.2    2.8  4  EF-hand_7      EF-hand domain pair
    2.3e-13   49.8  13.5      2e-05   24.3   0.1    4.6  4  EF-hand_8      EF-hand domain pair
     0.0032   17.6   1.7     0.0032   17.6   1.7    2.3  2  p25-alpha      p25-alpha
  ------ inclusion threshold ------
      0.029   14.2   1.5         11    5.9   0.1    3.4  3  EF-hand_10     EF hand
       0.03   14.3   2.2         10    6.0   0.0    3.6  4  Caleosin       Caleosin related protein
       0.04   14.3   0.0       0.35   11.2   0.0    2.3  2  EF-hand_9      EF-hand domain
      0.074   13.4   4.5         13    6.2   2.3    3.5  2  EF-hand_14     EF-hand domain
        3.1    8.3   6.3         52    4.3   6.3    2.5  1  DUF3037        Protein of unknown function (DUF3037)


Domain annotation for each model (and alignments):
>> EF-hand_1  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.6   1.5   1.7e-10   2.8e-07       4      28 ..      28      52 ..      27      53 .. 0.93
   2 !   13.2   0.0   2.9e-05     0.047       2      26 ..      65      89 ..      64      92 .. 0.91
   3 !   18.3   1.6   6.8e-07    0.0011       4      23 ..     163     182 ..     162     183 .. 0.94
   4 !   17.8   0.1   9.9e-07    0.0016       2      23 ..     197     218 ..     196     223 .. 0.91

  Alignments for each domain:
  == domain 1  score: 29.6 bits;  conditional E-value: 1.7e-10
                HHHHHHTTTSSSEEEHHHHHHHHHH CS
   EF-hand_1  4 eiFrefDkDgdGkIdfeEfkellkk 28
                +iF+e+Dk+gdGkI++ Ef+++l++
  KOO22183.1 28 DIFKEMDKNGDGKISKMEFRQYLRD 52
                79********************986 PP

  == domain 2  score: 13.2 bits;  conditional E-value: 2.9e-05
                HHHHHHHHTTTSSSEEEHHHHHHHH CS
   EF-hand_1  2 lkeiFrefDkDgdGkIdfeEfkell 26
                ++++F+e+D+D +G ++ +E +e +
  KOO22183.1 65 VDKLFMELDVDLSGELSPSEIVEGV 89
                79******************99875 PP

  == domain 3  score: 18.3 bits;  conditional E-value: 6.8e-07
                 HHHHHHTTTSSSEEEHHHHH CS
   EF-hand_1   4 eiFrefDkDgdGkIdfeEfk 23 
                 ++++ fD D++G Id++Ef+
  KOO22183.1 163 DMMQQFDNDKNGAIDLSEFM 182
                 7******************7 PP

  == domain 4  score: 17.8 bits;  conditional E-value: 9.9e-07
                 HHHHHHHHTTTSSSEEEHHHHH CS
   EF-hand_1   2 lkeiFrefDkDgdGkIdfeEfk 23 
                 l +iF+ fD Dg+G++d +E++
  KOO22183.1 197 LGRIFASFDSDGSGTLDMKELQ 218
                 668*****************97 PP

>> EF-hand_6  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.2   0.3     3e-10   4.9e-07       3      30 ..      27      53 ..      25      57 .. 0.91
   2 !    9.6   0.0   0.00057      0.93       3      23 ..      66      86 ..      64      93 .. 0.89
   3 !   14.5   0.3   1.6e-05     0.026       7      27 ..     166     186 ..     162     191 .. 0.84
   4 !   20.8   0.1   1.4e-07   0.00024       2      27 ..     197     222 ..     196     229 .. 0.87

  Alignments for each domain:
  == domain 1  score: 29.2 bits;  conditional E-value: 3e-10
   EF-hand_6  3 reaFklfDkdgdGkidaeElrkalrkal 30
                +++Fk++Dk+gdGki++ E+r+ lr + 
  KOO22183.1 27 MDIFKEMDKNGDGKISKMEFRQYLR-DI 53
                589**********************.44 PP

  == domain 2  score: 9.6 bits;  conditional E-value: 0.00057
   EF-hand_6  3 reaFklfDkdgdGkidaeElr 23
                +++F+++D+d +G+++++E++
  KOO22183.1 66 DKLFMELDVDLSGELSPSEIV 86
                689****************97 PP

  == domain 3  score: 14.5 bits;  conditional E-value: 1.6e-05
   EF-hand_6   7 klfDkdgdGkidaeElrkalr 27 
                 ++fD+d++G id +E++  +r
  KOO22183.1 166 QQFDNDKNGAIDLSEFMFNIR 186
                 78**************87666 PP

  == domain 4  score: 20.8 bits;  conditional E-value: 1.4e-07
   EF-hand_6   2 lreaFklfDkdgdGkidaeElrkalr 27 
                 l ++F  fD dg+G++d++El+  + 
  KOO22183.1 197 LGRIFASFDSDGSGTLDMKELQTNMH 222
                 5689*****************98666 PP

>> EF-hand_5  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.7   0.3   8.5e-11   1.4e-07       3      23 ..      28      48 ..      27      50 .. 0.92
   2 !    7.9   0.0    0.0014       2.3       2      21 ..      66      85 ..      65      90 .. 0.87
   3 !   15.6   0.6   5.1e-06    0.0083       3      22 ..     163     182 ..     162     186 .. 0.93
   4 !   18.3   0.0   7.1e-07    0.0012       4      23 ..     200     219 ..     197     222 .. 0.88

  Alignments for each domain:
  == domain 1  score: 30.7 bits;  conditional E-value: 8.5e-11
                HHHHHH-SS-SSCE-HHHHHH CS
   EF-hand_5  3 dtFqaiDlNgDGkIskeELkt 23
                d F+++D+NgDGkIsk E+++
  KOO22183.1 28 DIFKEMDKNGDGKISKMEFRQ 48
                67*****************97 PP

  == domain 2  score: 7.9 bits;  conditional E-value: 0.0014
                HHHHHHH-SS-SSCE-HHHH CS
   EF-hand_5  2 kdtFqaiDlNgDGkIskeEL 21
                +++F ++D++ +G +s++E 
  KOO22183.1 66 DKLFMELDVDLSGELSPSEI 85
                579***************96 PP

  == domain 3  score: 15.6 bits;  conditional E-value: 5.1e-06
                 HHHHHH-SS-SSCE-HHHHH CS
   EF-hand_5   3 dtFqaiDlNgDGkIskeELk 22 
                 d+ q++D ++ G I+ +E++
  KOO22183.1 163 DMMQQFDNDKNGAIDLSEFM 182
                 689***************95 PP

  == domain 4  score: 18.3 bits;  conditional E-value: 7.1e-07
                 HHHHH-SS-SSCE-HHHHHH CS
   EF-hand_5   4 tFqaiDlNgDGkIskeELkt 23 
                  F  +D +g+G++++ EL+t
  KOO22183.1 200 IFASFDSDGSGTLDMKELQT 219
                 6999**************98 PP

>> EF-hand_7  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.7   0.2   1.1e-11   1.8e-08       5      68 ..      27      87 ..      24     103 .. 0.94
   2 !   11.1   0.2   0.00025       0.4      48      67 ..     163     182 ..     131     186 .. 0.78
   3 !   30.2   1.7   2.7e-10   4.4e-07       6      69 ..     163     220 ..     147     222 .. 0.91
   4 !   17.6   0.1   2.4e-06    0.0039       2      34 ..     195     227 ..     194     256 .. 0.77

  Alignments for each domain:
  == domain 1  score: 34.7 bits;  conditional E-value: 1.1e-11
   EF-hand_7  5 keaFkelDtdgdgyldkeellrllrkifqgagegsklsdeelellfkefDtdkdGvisfdEFlk 68
                +++Fke+D++gdg+++k e++++lr i      g+ ++  ++++lf e+D d +G++s +E ++
  KOO22183.1 27 MDIFKEMDKNGDGKISKMEFRQYLRDIG---IMGKAFTAAQVDKLFMELDVDLSGELSPSEIVE 87
                689***********************99...999***********************9888765 PP

  == domain 2  score: 11.1 bits;  conditional E-value: 0.00025
   EF-hand_7  48 llfkefDtdkdGvisfdEFl 67 
                 ++++ fD dk+G i+++EF+
  KOO22183.1 163 DMMQQFDNDKNGAIDLSEFM 182
                 57888888888888888886 PP

  == domain 3  score: 30.2 bits;  conditional E-value: 2.7e-10
   EF-hand_7   6 eaFkelDtdgdgyldkeellrllrkifqgagegsklsdeelellfkefDtdkdGvisfdEFlkl 69 
                 ++ +++D+d++g +d +e++ +  +       g + sde l ++f  fD+d++G++++ E+++ 
  KOO22183.1 163 DMMQQFDNDKNGAIDLSEFM-FNIR-----KMGLEASDEDLGRIFASFDSDGSGTLDMKELQTN 220
                 56789*************99.5555.....9999999***********************9975 PP

  == domain 4  score: 17.6 bits;  conditional E-value: 2.4e-06
   EF-hand_7   2 eklkeaFkelDtdgdgyldkeellrllrkifqg 34 
                 e+l ++F ++D+dg+g ld+ el+  ++k++++
  KOO22183.1 195 EDLGRIFASFDSDGSGTLDMKELQTNMHKLNDA 227
                 78999*****************99766555544 PP

>> EF-hand_8  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.3   0.1   1.2e-08     2e-05      30      53 ..      28      51 ..       4      52 .. 0.92
   2 !    8.2   0.0    0.0013       2.1      17      48 ..      56      85 ..      53      91 .. 0.86
   3 !   13.4   1.5   3.2e-05     0.052      30      50 ..     163     183 ..     162     183 .. 0.94
   4 !    9.6   0.2   0.00049      0.79      14      47 ..     185     216 ..     184     223 .. 0.91

  Alignments for each domain:
  == domain 1  score: 24.3 bits;  conditional E-value: 1.2e-08
   EF-hand_8 30 ilfrefDtdgdGkisfeEFcvlle 53
                ++f+e+D +gdGkis++EF ++l 
  KOO22183.1 28 DIFKEMDKNGDGKISKMEFRQYLR 51
                58******************9986 PP

  == domain 2  score: 8.2 bits;  conditional E-value: 0.0013
   EF-hand_8 17 lglkkglseeevdilfrefDtdgdGkisfeEF 48
                +g++  +++ +vd lf+e+D d +G +s  E 
  KOO22183.1 56 MGKA--FTAAQVDKLFMELDVDLSGELSPSEI 85
                4888..*******************9987766 PP

  == domain 3  score: 13.4 bits;  conditional E-value: 3.2e-05
   EF-hand_8  30 ilfrefDtdgdGkisfeEFcv 50 
                 +++  fD d++G+i++ EF++
  KOO22183.1 163 DMMQQFDNDKNGAIDLSEFMF 183
                 599****************96 PP

  == domain 4  score: 9.6 bits;  conditional E-value: 0.00049
   EF-hand_8  14 lrilglkkglseeevdilfrefDtdgdGkisfeE 47 
                 +r++gl+   s+e++  +f  fD dg+G+++ +E
  KOO22183.1 185 IRKMGLE--ASDEDLGRIFASFDSDGSGTLDMKE 216
                 5788999..9********************9988 PP

>> p25-alpha  p25-alpha
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.6   1.7     2e-06    0.0032      14     118 ..      35     134 ..      24     135 .. 0.77
   2 ?    0.5   0.1      0.38   6.2e+02      42      81 ..     195     231 ..     186     263 .. 0.74

  Alignments for each domain:
  == domain 1  score: 17.6 bits;  conditional E-value: 2e-06
   p25-alpha  14 kktgkemdnknfsKlckDckiidkkvtstdvDiiFsKvkaksarkitfeqfkealeelaekkfkkkkkeeeleliekliegkgPklqgvtkatkagavd 112
                 k++  ++ + +f   ++D +i++k++t+ +vD +F       + +++ +++ e +  + ++  k++k+++++  +e  ++     + ++ + ++a+av+
  KOO22183.1  35 KNGDGKISKMEFRQYLRDIGIMGKAFTAAQVDKLFMELDVDLSGELSPSEIVEGVVLFKKN-AKEAKEKTQK--AEANAAHW--RARAACAEKAAEAVR 128
                 44566799999******************************************99988777.4444444444..44444444..455556789999999 PP

   p25-alpha 113 rltDts 118
                 r+ D++
  KOO22183.1 129 RYEDAK 134
                 999976 PP

  == domain 2  score: 0.5 bits;  conditional E-value: 0.38
   p25-alpha  42 tdvDiiFsKvkaksarkitfeqfkealeelaekkfkkkkk 81 
                 +d + iF+ + + ++ ++++++ ++ + +l + +     +
  KOO22183.1 195 EDLGRIFASFDSDGSGTLDMKELQTNMHKLNDAQS---AE 231
                 67778999999999999999999999999988833...33 PP

>> EF-hand_10  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.9   0.1     0.007        11      25      48 ..      28      51 ..      26      53 .. 0.91
   2 ?    0.8   0.0      0.28   4.6e+02      25      45 ..      67      87 ..      63      90 .. 0.90
   3 ?    4.4   0.1     0.022        35      12      45 ..     186     219 ..     165     224 .. 0.86

  Alignments for each domain:
  == domain 1  score: 5.9 bits;  conditional E-value: 0.007
  EF-hand_10 25 kLFkkcDkSksgrLegeEieeFyk 48
                 +Fk+ Dk  +g++   E+ ++++
  KOO22183.1 28 DIFKEMDKNGDGKISKMEFRQYLR 51
                59*****************99987 PP

  == domain 2  score: 0.8 bits;  conditional E-value: 0.28
  EF-hand_10 25 kLFkkcDkSksgrLegeEiee 45
                kLF + D   sg L  +Ei+e
  KOO22183.1 67 KLFMELDVDLSGELSPSEIVE 87
                799999************986 PP

  == domain 3  score: 4.4 bits;  conditional E-value: 0.022
  EF-hand_10  12 reiNievddeYAekLFkkcDkSksgrLegeEiee 45 
                 r++ +e +de    +F   D   sg+L+ +E+++
  KOO22183.1 186 RKMGLEASDEDLGRIFASFDSDGSGTLDMKELQT 219
                 77788888888889*****************986 PP

>> Caleosin  Caleosin related protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.7   0.0      0.28   4.5e+02      14      35 ..      34      55 ..      28      71 .. 0.79
   2 ?   -0.5   0.0      0.61   9.9e+02      90     119 ..      60      89 ..      56     129 .. 0.65
   3 ?    6.0   0.0    0.0062        10      12      36 ..     167     191 ..     162     195 .. 0.91
   4 ?    4.1   0.0     0.024        39      94     126 ..     196     228 ..     192     268 .. 0.76

  Alignments for each domain:
  == domain 1  score: 0.7 bits;  conditional E-value: 0.28
    Caleosin 14 DrdkdGiiypldtyrgfralgf 35
                D++ dG i  ++  + +r++g+
  KOO22183.1 34 DKNGDGKISKMEFRQYLRDIGI 55
                8889999999888888888875 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 0.61
    Caleosin  90 fvpqkfeeifskyakekkdaltlkevlell 119
                 f+ ++ +++f + + + +++l+ +e++e +
  KOO22183.1  60 FTAAQVDKLFMELDVDLSGELSPSEIVEGV 89 
                 666677777777777777777766666533 PP

  == domain 3  score: 6.0 bits;  conditional E-value: 0.0062
    Caleosin  12 FfDrdkdGiiypldtyrgfralgfn 36 
                  fD+dk+G i +++ +  +r++g++
  KOO22183.1 167 QFDNDKNGAIDLSEFMFNIRKMGLE 191
                 6*********************987 PP

  == domain 4  score: 4.1 bits;  conditional E-value: 0.024
    Caleosin  94 kfeeifskyakekkdaltlkevlellkgqreal 126
                  + +if+ ++++ +++l +ke+++ +++ ++a 
  KOO22183.1 196 DLGRIFASFDSDGSGTLDMKELQTNMHKLNDAQ 228
                 6779******************98887765554 PP

>> EF-hand_9  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.1   0.0      0.62     1e+03       4      45 ..      30      73 ..      28      82 .. 0.69
   2 ?   11.2   0.0   0.00021      0.35       5      63 ..     166     222 ..     163     225 .. 0.92

  Alignments for each domain:
  == domain 1  score: 0.1 bits;  conditional E-value: 0.62
   EF-hand_9  4 FevcDtqktGrVpvsrlidyLravtaq..dpeeseLeelakelD 45
                F+  D +  G++   +  +yLr  +    + + +++++l  elD
  KOO22183.1 30 FKEMDKNGDGKISKMEFRQYLRDIGIMgkAFTAAQVDKLFMELD 73
                77778888888888888889988876322334447777777766 PP

  == domain 2  score: 11.2 bits;  conditional E-value: 0.00021
   EF-hand_9   5 evcDtqktGrVpvsrlidyLravtaqdpeeseLeelakelDPdgedasvdldtflrvmr 63 
                 + +D +k G + +s+ +   r+++  + ++ +L    +++D dg  +++d+   ++ m 
  KOO22183.1 166 QQFDNDKNGAIDLSEFMFNIRKMGL-EASDEDLGRIFASFDSDGS-GTLDMKELQTNMH 222
                 569**********************.99999**************.9999998888775 PP

>> EF-hand_14  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.4   0.0      0.03        49       5      32 ..      29      56 ..      26      60 .. 0.90
   2 ?    6.2   2.3    0.0081        13       8      49 ..     167     208 ..     162     276 .. 0.83

  Alignments for each domain:
  == domain 1  score: 4.4 bits;  conditional E-value: 0.03
  EF-hand_14  5 lfdlfkdeetdklsvakllkaLaetGir 32
                +f+ +++++++k+s  ++ + L++ Gi 
  KOO22183.1 29 IFKEMDKNGDGKISKMEFRQYLRDIGIM 56
                788888999*****************96 PP

  == domain 2  score: 6.2 bits;  conditional E-value: 0.0081
  EF-hand_14   8 lfkdeetdklsvakllkaLaetGirkdDpRLkellkklkkve 49 
                  f++++++ + +++++ +++++G++ +D  L  ++  + +  
  KOO22183.1 167 QFDNDKNGAIDLSEFMFNIRKMGLEASDEDLGRIFASFDSDG 208
                 588899999*******************99988888776655 PP

>> DUF3037  Protein of unknown function (DUF3037)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.3   6.3     0.032        52      19      84 ..      88     156 ..      84     284 .. 0.79

  Alignments for each domain:
  == domain 1  score: 4.3 bits;  conditional E-value: 0.032
     DUF3037  19 GVvlfskkegflkvrlelde.....aRlralfpeldlealeeelkaleeicegekaagpiakldlaerfrw 84 
                 GVvlf+k+++++k ++++ e      R ra + e + ea++++ +a  ei   + +++p a+ +lae+fr+
  KOO22183.1  88 GVVLFKKNAKEAKEKTQKAEanaahWRARAACAEKAAEAVRRYEDAKLEIE--RIKNEPSAESRLAEMFRK 156
                 9*****999999999999885554457777776666666666665544442..222345555555555554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (302 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1857  (0.103575); expected 358.6 (0.02)
Passed bias filter:                      593  (0.0330749); expected 358.6 (0.02)
Passed Vit filter:                        58  (0.00323498); expected 17.9 (0.001)
Passed Fwd filter:                        15  (0.000836633); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.55u 0.28s 00:00:00.83 Elapsed: 00:00:00.44
# Mc/sec: 2049.57
//
Query:       KOO22184.1  [L=1102]
Description: p-ATPase family transporter: cation [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    5.7e-12   46.4  10.7    2.2e-05   24.9   0.0    3.8  4  Hydrolase     haloacid dehalogenase-like hydrolase
  ------ inclusion threshold ------
       0.15   12.2   0.1       0.44   10.7   0.1    1.9  1  GPHR_N        The Golgi pH Regulator (GPHR) Family N-terminal
       0.19   11.8   2.1          4    7.6   0.4    3.3  2  DUF4229       Protein of unknown function (DUF4229)
       0.77    9.3   8.6      0.032   13.8   0.5    2.8  3  E1-E2_ATPase  E1-E2 ATPase
        7.3    6.6   7.1        6.2    6.8   1.2    2.8  2  DUF2909       Protein of unknown function (DUF2909)


Domain annotation for each model (and alignments):
>> Hydrolase  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.5   0.3   7.3e-05      0.26       1      16 [.     156     171 ..     156     206 .. 0.87
   2 !   15.5   0.2   4.4e-06     0.016      59     156 ..     364     483 ..     306     504 .. 0.71
   3 !   24.9   0.0   6.1e-09   2.2e-05     138     210 .]     534     603 ..     506     603 .. 0.77
   4 ?   -2.8   0.2       1.8   6.5e+03      54      77 ..     665     683 ..     621     751 .. 0.50

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 7.3e-05
                 SSEEEEESBTTTBCHH CS
                 xxxxxxxxxxxxxxxx RF
   Hydrolase   1 iktvvfDkdGTLttge 16 
                 i++++fDk+GTLtt +
  KOO22184.1 156 IDAILFDKTGTLTTDK 171
                 79***********987 PP

  == domain 2  score: 15.5 bits;  conditional E-value: 4.4e-06
                 HHHHETTTEHHHHTHHHHHHHH....HCHHHHHHHHHHHHHHCHHHHHH.........................TTHHHHHHHHHHTHHBHTTHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxx....xxxxxxxxxxxxxxxxxxxxxxx.........................xxxxxxxxxxxxxxxxxxxxxxxxx RF
   Hydrolase  59 gfatfigrgayaigkpewltal....dippdlgaaigsaqsqgrtvall.........................qaralavftiadplkvkpeaaeava 128
                   a+     ++a+g+pe +++l      p +++a+  ++ ++g  v  l                         +   ++ +++a +   + +   +v+
  KOO22184.1 364 PSAQ-----VLAKGSPEAIKRLlapnACPAWYDAKYRALAERGMRVLALahreagtgdaqaaalaaeprdtverDLVFDGFIAFACK--TRADSPTVVH 455
                 3334.....788888888888888877777777777777777777777788888888888888888888888777799999999966..9999999999 PP

                 HHHHTTEEEEEEESSEHHHHHHHHHHTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   Hydrolase 129 sLkaagievvlltgdnpetaeraanqlG 156
                 +L +    v++ltgd p ta ++a+++G
  KOO22184.1 456 ALIESAHYVAMLTGDAPLTALHVAKEVG 483
                 98888667******************** PP

  == domain 3  score: 24.9 bits;  conditional E-value: 6.1e-09
                 EEEESSEHHHHHHHHHH.TTGGGESEEEEHHCESSTTTSHHHHHHHHHHHT.STGGGEEEEESSHHHHHHHHHTT CS
                 xxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxx RF
   Hydrolase 138 vlltgdnpetaeraanq.lGddyfdaviasdietvakpspegkvaaireLq.gkpeevamVGDgvnDaaalaaAg 210
                  l+t ++   a  +a+  +       ++ +   ++a  sp+gk  +ir Lq  ++ +v+m GDg nD+ al++ +
  KOO22184.1 534 DLMTTGDALEAAGVASGgAS-----WSHMRQLRVFARMSPSGKATVIRMLQeRSGCKVLMCGDGGNDVGALKQSD 603
                 55555555555555555344.....566666667999**************555999***************976 PP

  == domain 4  score: -2.8 bits;  conditional E-value: 1.8
                 HHHHHHHHHETTTEHHHHTHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxx RF
   Hydrolase  54 sgaltgfatfigrgayaigkpewl 77 
                 + al+  ++     +++  ++ w+
  KOO22184.1 665 RDALKAKQK-----ELQALQQVWM 683
                 222222222.....2222222222 PP

>> GPHR_N  The Golgi pH Regulator (GPHR) Family N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.1   0.00012      0.44      19      67 ..     606     659 ..     604     660 .. 0.89

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00012
      GPHR_N  19 mAiLSGfGavstpyetfsl.....fkrpvteadinslearlehtrellaekrke 67 
                 +A+LSG+G ++t  e ++      + + + ea+++ +e++l+++   la+k +e
  KOO22184.1 606 LALLSGYGNTNTSDEEVKAgatqaLAPGTREAHMSGAEQALNQSARNLAKKAAE 659
                 79*************999876655599999********************9865 PP

>> DUF4229  Protein of unknown function (DUF4229)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.6   0.4    0.0011         4      27      52 ..      69      94 ..      55      98 .. 0.84
   2 ?    1.7   0.1     0.075   2.7e+02      29      64 ..    1064    1099 ..    1050    1102 .] 0.82

  Alignments for each domain:
  == domain 1  score: 7.6 bits;  conditional E-value: 0.0011
     DUF4229 27 lpvpllvaallAlvvalplSmvllkk 52
                 +v  ++a+l+ lv al+ S++++++
  KOO22184.1 69 DSVDTMIALLILLVFALAASFFVFRR 94
                348999******************97 PP

  == domain 2  score: 1.7 bits;  conditional E-value: 0.075
     DUF4229   29 vpllvaallAlvvalplSmvllkklRdrataqvaer 64  
                  ++++v++  + ++ l++++++ kk  ++ + q+ae 
  KOO22184.1 1064 LGVIVMLSTGNLLFLIIGWFVYKKFNEAQAKQLAEQ 1099
                  677888888889999*****************9986 PP

>> E1-E2_ATPase  E1-E2 ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.5   8.8e-06     0.032      80     180 ..      38     139 ..       5     140 .. 0.75
   2 ?   -1.6   0.2      0.45   1.6e+03      70     117 ..     622     669 ..     615     672 .. 0.79
   3 ?   -3.0   0.1       1.3   4.6e+03     113     143 ..    1058    1088 ..    1044    1093 .. 0.74

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 8.8e-06
                   EEEEEEEE-TTTSTTTTTSTTS--------HHHHHHHHHHHHHHHHHHHHHHHHHHS-STTTSSTT...HHHHHHHHHHHHHS-TTHHHHHHHHHHH CS
  E1-E2_ATPase  80 eakavVtatgedtelgkiarlveeakskktplqkkldklgkvlvpvvlliallvflialllgksla...eallralallvaaiPcaLplavplalal 173
                    + + V++ g  +  g+++ ++e +++k       +d +++ l+++v+++a+ +f++   l+k+ +   e ll+ + ++++++P  Lp+ + la+ +
    KOO22184.1  38 GCLCYVLRSGFLSAQGELMMMIEFSQQKV--SDDSVDTMIALLILLVFALAASFFVFRRGLEKGDRtthELLLKCVIIVTSVVPRHLPMQTALAVNT 132
                   55666777777777777777777764444..4567777777777777777777777777766666688999999*****************999999 PP

                   HHHHHHH CS
  E1-E2_ATPase 174 garrlak 180
                   ++++l++
    KOO22184.1 133 ALMALMR 139
                   9988876 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 0.45
                   E-TT-EEEE-EEEEEEEE-TTTSTTTTTSTTS--------HHHHHHHH CS
  E1-E2_ATPase  70 vfsGtvvvsgeakavVtatgedtelgkiarlveeakskktplqkkldk 117
                   v +G++    + + ++   g +  l++ ar +++++++ ++lq+ + k
    KOO22184.1 622 VKAGATQALAPGTREAHMSGAEQALNQSARNLAKKAAESARLQRDALK 669
                   556666666666667777899999*******************99866 PP

  == domain 3  score: -3.0 bits;  conditional E-value: 1.3
                    HHHHHHHHHHHHHHHHHHHHHHHS-STTTSS CS
  E1-E2_ATPase  113 kkldklgkvlvpvvlliallvflialllgks 143 
                    + l k+ +v+v++++  +l++++ +++++k+
    KOO22184.1 1058 QSLAKVLGVIVMLSTGNLLFLIIGWFVYKKF 1088
                    5566777777777777788888888877765 PP

>> DUF2909  Protein of unknown function (DUF2909)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.8   1.2    0.0017       6.2       6      39 ..      75     108 ..      73     118 .. 0.89
   2 ?    1.8   0.5     0.063   2.3e+02      33      56 ..    1060    1083 ..    1054    1084 .. 0.89

  Alignments for each domain:
  == domain 1  score: 6.8 bits;  conditional E-value: 0.0017
     DUF2909   6 vllLlaiiasLgsALfflvkdkgkskrmvraLal 39 
                 ++lL++ ++ L++++f+  ++ +k++r+ + L l
  KOO22184.1  75 IALLILLVFALAASFFVFRRGLEKGDRTTHELLL 108
                 799*************************999865 PP

  == domain 2  score: 1.8 bits;  conditional E-value: 0.063
     DUF2909   33 mvraLalRVgLSillflllllalk 56  
                   +++L++ V+LS   +l+l++++ 
  KOO22184.1 1060 LAKVLGVIVMLSTGNLLFLIIGWF 1083
                  6899****************9985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1102 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       907  (0.0505884); expected 358.6 (0.02)
Passed bias filter:                      530  (0.029561); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.80u 0.26s 00:00:01.06 Elapsed: 00:00:00.44
# Mc/sec: 7583.80
//
Query:       KOO22185.1  [L=1581]
Description: aspartate carbamoyltransferase, partial [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   6.7e-104  346.0   0.3    1.2e-78  263.5   0.0    2.3  2  CPSase_L_D2      Carbamoyl-phosphate synthase L chain, ATP bi
    3.4e-48  162.7   0.0    6.8e-48  161.7   0.0    1.5  1  CPSase_sm_chain  Carbamoyl-phosphate synthase small chain, CP
    8.9e-41  139.8   0.0    4.4e-40  137.5   0.0    2.0  2  GATase           Glutamine amidotransferase class-I
    1.1e-36  125.9   0.1    2.9e-36  124.5   0.1    1.8  1  CPSase_L_D3      Carbamoyl-phosphate synthetase large chain, 
    4.6e-15   55.6   0.1    3.3e-09   36.5   0.1    2.7  2  ATP-grasp        ATP-grasp domain
      1e-12   48.1   0.0    3.9e-12   46.2   0.0    2.1  2  MGS              MGS-like domain
    2.5e-12   46.7   0.2    6.8e-05   22.6   0.1    2.5  2  ATPgrasp_Ter     ATP-grasp in the biosynthetic pathway with T
    6.1e-12   45.5   0.3    5.4e-05   22.8   0.0    2.5  2  Dala_Dala_lig_C  D-ala D-ala ligase C-terminus
    1.6e-06   28.2   0.5    0.00083   19.4   0.2    2.5  2  ATP-grasp_3      ATP-grasp domain
    0.00027   20.8   2.0     0.0073   16.1   0.3    3.0  2  Peptidase_C26    Peptidase C26
     0.0061   16.8   1.0       0.51   10.7   0.0    3.9  4  Nif11            Nif11 domain
  ------ inclusion threshold ------
      0.028   14.2   0.2       0.26   11.0   0.1    2.4  2  GARS_A           Phosphoribosylglycinamide synthetase, ATP-gr
       0.19   10.6   0.0       0.34    9.8   0.0    1.3  1  DOCK_N           DOCK N-terminus


Domain annotation for each model (and alignments):
>> CPSase_L_D2  Carbamoyl-phosphate synthase L chain, ATP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  263.5   0.0   8.5e-82   1.2e-78       1     209 [.     628     830 ..     628     832 .. 0.99
   2 !   80.4   0.1     9e-26   1.2e-22       1     206 [.    1178    1376 ..    1178    1380 .. 0.92

  Alignments for each domain:
  == domain 1  score: 263.5 bits;  conditional E-value: 8.5e-82
                  SHHHHHHHHHHTT-BBSSEECSSBSSHHHHHHHHHHH-SSEEEEETTCCTTTTEEEESSHHHHHHHHHHHHHHHHHHHSTS-EEEEE--SSSEEEEEE CS
  CPSase_L_D2   1 DkesakealkkinvpvvpssaapvetleealaiakeigyPviikaafglGGkGmrvarneeelaelvkkalaeakaafgnkqvlvekslkgpkeiEve 98 
                  D++ ++e+l++i+++++++ +a  et e+++a+a+++gyPvi++aaf+lGG+G+++a+n+ee  +l+++al+ +      +qvlve+s kg+keiE+e
   KOO22185.1 628 DRKIFAEKLREIHEKIAEGLTA--ETPEDVVACARKLGYPVILRAAFALGGLGSGFASNDEECLALATQALSGS------PQVLVERSFKGWKEIEYE 717
                  99********************..**********************************************9999......8***************** PP

                  EEEETTS-EEEEEEEEECCEC..TCCCCEEEES-SS--HHHHHHHHHHHHHHHHHHT-EEEEEEEEEEETTTTEEEEEEEESS--CCHHHHHHHHS-- CS
  CPSase_L_D2  99 vlrDakgnvitvcerenslql..rtqkvievAPsqtLtdeerqalreaavkvvrevgvvgagtveflldpkskeyyviEvNtRlsvesalaekaTGld 194
                  v+rDa++n+itvc++en+++l  +t+++i+vAPsqtL+++e+ +lr+ a+kv+r++g+vg+++++++ldp+s++y++iEvN+Rls++sala+kaTG++
   KOO22185.1 718 VVRDAADNCITVCNMENFDPLgiHTGDSIVVAPSQTLSNAEYMKLRSVAIKVARHIGIVGECNIQYALDPDSEDYFIIEVNARLSRSSALASKATGYP 815
                  ************************************************************************************************** PP

                  HHHHHHHHHTT--GC CS
  CPSase_L_D2 195 lvkeaakialgekLe 209
                  l+++a k+alge+L+
   KOO22185.1 816 LAYVACKLALGEQLP 830
                  *************97 PP

  == domain 2  score: 80.4 bits;  conditional E-value: 9e-26
                   SHHHHHHHHHHTT-BBSSEECSSBSSHHHHHHHHHHH-SSEEEEETTCCTTTTEEEESSHHHHHHHHHHHHHHHHHHHSTS-EEEEE--SSSEEEE CS
  CPSase_L_D2    1 DkesakealkkinvpvvpssaapvetleealaiakeigyPviikaafglGGkGmrvarneeelaelvkkalaeakaafgnkqvlvekslkgpkeiE 96  
                   D+++++++l+ki+v+  + s++  +++ +a ++ +++ yP++i++++ l G  m+v+ n+++l++ ++ a + ++     + v + k+++g keiE
   KOO22185.1 1178 DRNKFSAILDKIGVDQPEWSEV--TSIANAKEFCERVTYPCLIRPSYVLSGAAMKVVFNDKDLEKFLAIACDVSP----LHPVVISKFVEGAKEIE 1267
                   9***************999999..9*************************************************7....99*************** PP

                   EEEEEETTS-EEEEEEEEECCEC..TCCCCEEEES-SS--HHHHHHHHHHHHHHHHHHT-EEEEEEEEEEETTTTEEEEEEEESS--CCHHHHHHH CS
  CPSase_L_D2   97 vevlrDakgnvitvcerenslql..rtqkvievAPsqtLtdeerqalreaavkvvrevgvvgagtveflldpkskeyyviEvNtRlsvesalaeka 190 
                   v+ ++ ++g ++  +  e + +   + ++   + P+q L  e+ +++++   ++++e+++ g  +++ l +  ++e  viE N R s+  +  +k+
   KOO22185.1 1268 VDTVA-KDGVIVNYAVGEHVENAgvHSGDATLMLPAQKLYVETCRRVKRIMRAIAKELNINGPFNIQLLSK--DNEVKVIEANVRASRTFPFVSKT 1360
                   **997.4566665555555555556******************************************9877..69********************* PP

                   HS--HHHHHHHHHTT- CS
  CPSase_L_D2  191 TGldlvkeaakialge 206 
                     +d  ++a ++ +g+
   KOO22185.1 1361 LKVDFNEIATRVIVGA 1376
                   **********999886 PP

>> CPSase_sm_chain  Carbamoyl-phosphate synthase small chain, CPSase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  161.7   0.0   4.9e-51   6.8e-48       1     128 []     121     258 ..     121     258 .. 0.95

  Alignments for each domain:
  == domain 1  score: 161.7 bits;  conditional E-value: 4.9e-51
  CPSase_sm_chain   1 kavLvLedGtvfeGksfg.akeavGEvvfnTgmtGYqeiltDpsYagqilvltypliGnyGvneedves.........ekikvaglvvrelsee 84 
                      ka+L+L+dG+  +G+sfg ++++++EvvfnT+m+GY+e+ltDpsY+gqil+lt+pliGnyGv ++  ++         ek+++++l+v+++s +
       KOO22185.1 121 KATLILSDGSRHTGSSFGaERSMSSEVVFNTAMVGYPESLTDPSYRGQILTLTFPLIGNYGVPSDAKDElglpaffesEKVHISALLVSDYSPD 214
                      589***************77999***************************************76666667888888889*************** PP

  CPSase_sm_chain  85 psnwraeesLsewlkeekipgisgvDTRaLtkklrekgamkgvi 128
                      + +w++ +sL ewlke+++pg++g+DTRaLtk++re+gam+g+i
       KOO22185.1 215 SCHWNQVKSLGEWLKENGVPGLTGMDTRALTKRIREHGAMLGKI 258
                      ******************************************97 PP

>> GATase  Glutamine amidotransferase class-I
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  137.5   0.0   3.2e-43   4.4e-40       2     188 ..     309     485 ..     308     486 .. 0.94
   2 ?   -1.4   0.0       1.2   1.7e+03      36      56 ..    1124    1152 ..    1089    1166 .. 0.65

  Alignments for each domain:
  == domain 1  score: 137.5 bits;  conditional E-value: 3.2e-43
                 EEESSTSTHHHHHHHHHHTT-EEEEEETTSHHHHHHHTHHSTSEEEEEEESSCTT...TTTHHHHHHHHCT..STS-EEEETHHHHHHHHHTTTEEEEE CS
      GATase   2 liDnydsvtenlvhalvelgvkvevvpidasaeeilellknpdgilvsgGpgspg...vegkieaikeare..nkiPiLGICLGmQllaiefgrkvvke 95 
                  iD++  ++ n+++++++ gv++ vvp+d++++ +     ++dg+++s+Gpg+p+   v  k  a+  are    +P++GICLG+Ql+a++ g k++k+
  KOO22185.1 309 AIDCG--MKANIIRYFLSKGVELLVVPWDYDFLSE-----TYDGLFISNGPGDPTqcgVLIKRLAVALAREgaDFKPVFGICLGNQLIALAAGCKTYKM 400
                 68999..************************9999.....7***************77555666666667676789*********************** PP

                 ECEEEEEEEEEEEETTTCGGTTTTSEEEEEEEEEEEEESGCHHHTTEEEEEEEETTEEEEEEEEETTTEEEESSBTTSTTSTTHHHHHHHHHH CS
      GATase  96 kekehhggtmrlgddetallyglknevierhrHryevnpkelepaglevtakseddeelmeiiekknpfvgvQFHPEststpegpellfnfli 188
                 k ++++g+++++ d      + +++++i++++H+++v+  ++ p+g + ++++++d++++++i+ ++++++vQFHPE+  +p+++ +lf+ ++
  KOO22185.1 401 K-YGNRGANQPCID------TRTGRCYITAQNHGFAVDV-STIPEGYQQLFVNANDGSNEGLIHSTKNIFSVQFHPEACAGPTDTDFLFEMFM 485
                 *.************......8999**************9.*************************************************9875 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 1.2
                  H......HH..THHSTSEEEEEEESSCTT CS
      GATase   36 i......le..llknpdgilvsgGpgspg 56  
                  +      ++  +l+++dg+++s G  +p+
  KOO22185.1 1124 EislervMDiyELEKVDGVIISMGGQTPN 1152
                  033333333545999*******9988887 PP

>> CPSase_L_D3  Carbamoyl-phosphate synthetase large chain, oligomerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  124.5   0.1   2.1e-39   2.9e-36       2     122 .]     927    1047 ..     926    1047 .. 0.96

  Alignments for each domain:
  == domain 1  score: 124.5 bits;  conditional E-value: 2.1e-39
  CPSase_L_D3    2 elkeptdeRifaiaealrrglsveeiheltkidpwFLekleelvelekelkkkkk.eldeellreakklGfsDkqiaelleeeeeeevrelrkklg 96  
                   el++ptd+R++a+a a++ g++v++ ++ltki+pwFL+kl+++ +l+ +lk+ +  ++++++lr+ak++Gf D+qia+ ++  ++  vr+ rk+ g
   KOO22185.1  927 ELANPTDRRVWALAAAFEYGYTVDQCFQLTKINPWFLSKLHHVHKLRCALKQLTPqTVTSDMLRHAKQQGFADSQIANAMG-CDDMVVRTRRKAEG 1021
                   799************************************************998789********************9976.77788********* PP

  CPSase_L_D3   97 ilpvykrvDtcAaeFeaetpYlYstY 122 
                   i+p +k++Dt+AaeF+a+t+Y+Y+tY
   KOO22185.1 1022 ITPFVKQIDTLAAEFPAQTNYMYMTY 1047
                   *************************9 PP

>> ATP-grasp  ATP-grasp domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.0   4.5e-06    0.0062       8     143 ..     643     783 ..     636     804 .. 0.81
   2 !   36.5   0.1   2.4e-12   3.3e-09       2     159 ..    1187    1349 ..    1186    1353 .. 0.87

  Alignments for each domain:
  == domain 1  score: 16.1 bits;  conditional E-value: 4.5e-06
                 B-EEEEECCHHHHHHHHHHH-SCEEEEESSS-CTTTTEEEECTCCGHHCHHHHC..GTTCEEEEE----SEEEEEEEEEETTC-EEE--EEEEEEETTE CS
   ATP-grasp   8 vprflaveskeeleeaaeelglpvvvKarrlgydGkGqsvvrseedleqaleal..keekvivEefvpfekElsvlvvrsaeGetafypvvetvqedgi 104
                 +++ l++e+ e++ + a++lg+pv+++ +  +  G G+ +  ++e+   +++++  ++ +v+vE   +  kE+   vvr+a  +  ++  +e+    gi
  KOO22185.1 643 IAEGLTAETPEDVVACARKLGYPVILR-AAFALGGLGSGFASNDEECLALATQAlsGSPQVLVERSFKGWKEIEYEVVRDAADNCITVCNMENFDPLGI 740
                 566678899999999************.999**********9999988877777688999*******************99999999999999998888 PP

                 EE...EEEECEE-.SCHHHHHHHHHHHHHHHHHTSSEEEEEEE CS
   ATP-grasp 105 lr...lsvapaev.sekaqkkaeeiakkiveeLggvGvfavEl 143
                      ++vap++  s+++  k +++a k+++++g+vG   +  
  KOO22185.1 741 HTgdsIVVAPSQTlSNAEYMKLRSVAIKVARHIGIVGECNIQY 783
                 743337888877515567889999999*********9776655 PP

  == domain 2  score: 36.5 bits;  conditional E-value: 2.4e-12
                  HTTT--B-EEEEECCHHHHHHHHHHH-SCEEEEESSS-CTTTTEEEECTCCGHHCHHHHC....GTTCEEEEE----SEEEEEEEEEETTC-EEE-- CS
   ATP-grasp    2 eklglpvprflaveskeeleeaaeelglpvvvKarrlgydGkGqsvvrseedleqaleal....keekvivEefvpfekElsvlvvrsaeGetafyp 94  
                  +k g+  p++  v+s ++++e++e++ +p++++ +    +G   +vv +++dle++l+ +      ++v++ +fv+  kE+ v +v +++G ++ y+
  KOO22185.1 1187 DKIGVDQPEWSEVTSIANAKEFCERVTYPCLIR-PSYVLSGAAMKVVFNDKDLEKFLAIAcdvsPLHPVVISKFVEGAKEIEVDTV-AKDGVIVNYA 1281
                  688999***************************.99999*******************9988877799*************99998.689******* PP

                  EEEEEEETTEE....EEEEECEE-SCHHHHHHHHHHHHHHHHHTSSEEEEEEEEEETTCTEEEEEEESS CS
   ATP-grasp   95 vvetvqedgil....rlsvapaevsekaqkkaeeiakkiveeLggvGvfavElFvledgellvnElapR 159 
                  v e+v++ g+      l +  +++  +  +++++i++ i++eL++ G f + l  + d+e+ v E   R
  KOO22185.1 1282 VGEHVENAGVHsgdaTLMLPAQKLYVETCRRVKRIMRAIAKELNINGPFNIQLLSK-DNEVKVIEANVR 1349
                  *****988776221145555556777899************************999.888888776655 PP

>> MGS  MGS-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.0       6.7   9.2e+03      51      69 ..     532     550 ..     511     561 .. 0.70
   2 !   46.2   0.0   2.8e-15   3.9e-12       1      95 []    1459    1549 ..    1459    1549 .. 0.94

  Alignments for each domain:
  == domain 1  score: -3.1 bits;  conditional E-value: 6.7
                 HHHHHHHTTSCCEEEEE-- CS
         MGS  51 eildaikngeidlvintly 69 
                 +  +a+k+ + ++v ++++
  KOO22185.1 532 QAIKALKEMQCHIVLVNPN 550
                 5667777777777777765 PP

  == domain 2  score: 46.2 bits;  conditional E-value: 2.8e-15
                  THHHHHHHHHHTTCEEEEEHHHHHHHHHTT--EEECCCCHSTGSGGTHCHHHHHHHHTTSCCEEEEE--THHHHHH.CHHHHHHHHHHHTTSHEES CS
         MGS    1 glvelakklkelgfellATgGTakllkeagipvtevvektgegerlggrveildaikngeidlvintlypfkatva.kdgykirraaenidIplpt 95  
                  +++e +++l  +g +++ + GTa+++k++ ++ +++ +k ++g  +     ++da++++eidlvin+ ++++   + +dgy irr a+++++ l t
  KOO22185.1 1459 EMLESVRELIGMGLKVICSPGTADFFKANDLD-ISMMHKPSSGLLPS----VVDALEAKEIDLVINIRDSKADDGSvTDGYLIRRKAVDFKVCLLT 1549
                  699*****************************.99999999995555....**********************9999***************9876 PP

>> ATPgrasp_Ter  ATP-grasp in the biosynthetic pathway with Ter operon
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.4   0.0   1.2e-07   0.00016      49     118 ..     762     834 ..     751     845 .. 0.80
   2 !   22.6   0.1   4.9e-08   6.8e-05       4     110 ..    1253    1375 ..    1251    1391 .. 0.76

  Alignments for each domain:
  == domain 1  score: 21.4 bits;  conditional E-value: 1.2e-07
  ATPgrasp_Ter  49 lielaerlaeefgldglvnvQvrededg..pkLLEiNpRasGGlg.ysalaGvnlpylalklllgleteevee 118
                   l ++a ++a+++g+ g  n+Q+  d d   + ++E+N+R s      s ++G  l+y+a kl+lg++ + v++
    KOO22185.1 762 LRSVAIKVARHIGIVGECNIQYALDPDSedYFIIEVNARLSRSSAlASKATGYPLAYVACKLALGEQLPVVRN 834
                   667899****************9998776799********96555156777**************85555444 PP

  == domain 2  score: 22.6 bits;  conditional E-value: 4.9e-08
  ATPgrasp_Ter    4 allvmeyLeg.pEySvDvlaekgevl.aavpRrKekgglq.............elekdeelielaerlaeefgldglvnvQvrededgpkLLEiN 83  
                    ++++ ++ eg +E+ vD +a++g ++ +av    e+ g++             ++e+  ++  + +++a+e++++g +n+Q+  ++++ k++E N
    KOO22185.1 1253 PVVISKFVEGaKEIEVDTVAKDGVIVnYAVGEHVENAGVHsgdatlmlpaqklYVETCRRVKRIMRAIAKELNINGPFNIQLLSKDNEVKVIEAN 1347
                    5677788887469999999998766556776666644444455567677777788999999999999**************************** PP

  ATPgrasp_Ter   84 pRasGGlgysala.Gvnlpylalklllg 110 
                     Ras ++     +  v++ ++a + + g
    KOO22185.1 1348 VRASRTFPFVSKTlKVDFNEIATRVIVG 1375
                    ****999865554478888887777777 PP

>> Dala_Dala_lig_C  D-ala D-ala ligase C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.8   0.0   3.9e-08   5.4e-05      26     174 ..     653     799 ..     640     800 .. 0.85
   2 !   19.9   0.2     3e-07   0.00042      15     173 ..    1191    1347 ..    1185    1367 .. 0.74

  Alignments for each domain:
  == domain 1  score: 22.8 bits;  conditional E-value: 3.9e-08
                      HHHHHHHHHC-SSEEEEESSSSTTTTEEEESSGGGHHHHHHHHHTT-SCEEEEE--.ESEEEEEEEEETSSCEEEEEEEEE-SSSSS-HHHHHC CS
  Dala_Dala_lig_C  26 ellekveeelgypvfVKpareGSSvGvskveseeelkeaieeafkydekvlvEeai.egreievavlgneklevsevgeivvkkgfydyeakys 118
                      e + ++  +lgypv+ ++a +   +G   +++ ee  +   +a++   +vlvE+     +eie  v+ + + ++ +v ++    + +d    ++
       KOO22185.1 653 EDVVACARKLGYPVILRAAFALGGLGSGFASNDEECLALATQALSGSPQVLVERSFkGWKEIEYEVVRDAADNCITVCNM----ENFDPLGIHT 742
                      55667899************9999********************************6679********666666555444....4456666667 PP

                      .TT-EEESS----HHHHHHHHHHHHHHHHHTT--SEEEEEEEE.ETTTEEEEEEEES CS
  Dala_Dala_lig_C 119 ddkaqlevpaklekeveekiqelalkaykaldlrGlaRvDffl.teegeivlnEvNt 174
                      +d++ +    +l+++++ k++ +a+k+ + +++ G + + + l  ++++ ++ EvN 
       KOO22185.1 743 GDSIVVAPSQTLSNAEYMKLRSVAIKVARHIGIVGECNIQYALdPDSEDYFIIEVNA 799
                      89999999999********************************4455678899*995 PP

  == domain 2  score: 19.9 bits;  conditional E-value: 3e-07
                       EETTHHCH-H-.HHHHHHHHHC-SSEEEEESSSSTTTTEEEESSGGGHHHHHHHHHTT-..SCEEEEE--.ESEEEEEEEEE.TSSCEEEEE CS
  Dala_Dala_lig_C   15 lekeeakeekk.ellekveeelgypvfVKpareGSSvGvskveseeelkeaieeafkyd..ekvlvEeai.egreievavlg.neklevsev 101 
                       +++ e++e ++ +  ++ +e+++yp++++p+   S   ++ v + ++l+++++ a      + v++ +++  ++eiev  +  ++      v
       KOO22185.1 1191 VDQPEWSEVTSiANAKEFCERVTYPCLIRPSYVLSGAAMKVVFNDKDLEKFLAIACDVSplHPVVISKFVeGAKEIEVDTVAkDGVIVNYAV 1282
                       4445555544324456789*********************************99998874478*******889*****86661555555678 PP

                       EEEE-SSSSS-HHHHHC.TT-EEESS-.---HHHHHHHHHHHHHHHHHTT--SEEEEEEEEETTTEEEEEEEE CS
  Dala_Dala_lig_C  102 geivvkkgfydyeakysddkaqlevpa.klekeveekiqelalkaykaldlrGlaRvDfflteegeivlnEvN 173 
                       ge+v + g+          +a+l++pa kl  e+ ++++ +   + k l+++G   + ++  +++e+ + E N
       KOO22185.1 1283 GEHVENAGVHS-------GDATLMLPAqKLYVETCRRVKRIMRAIAKELNINGPFNIQLLS-KDNEVKVIEAN 1347
                       88888877753.......3333444441466777777777777777777777777777654.46777777766 PP

>> ATP-grasp_3  ATP-grasp domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.5   0.0    0.0057       7.8      31     159 ..     663     802 ..     633     804 .. 0.58
   2 !   19.4   0.2     6e-07   0.00083       2     158 ..    1177    1350 ..    1176    1353 .. 0.77

  Alignments for each domain:
  == domain 1  score: 6.5 bits;  conditional E-value: 0.0057
                  SSSEEEEESS-------B--SS--TTE..............EEEE---S.EEEEEEEEE.SSSEEEEEEEEEEEET........TEEEEEEES----H CS
  ATP-grasp_3  31 ekklvvKprdGaggesvrvveekeeaeaaieeve.......lvqefieG.kplSvsllsdgekvlvlavnrqliekaeke....fvyaGnvtpietel 116
                   +++++  + + gg +  ++ ++e ++ a+++++       lv +  +G k++  +++ d+ ++ + ++n +  +  + +    +v    v+p++t  
   KOO22185.1 663 GYPVILRAAFALGGLGSGFASNDE-ECLALATQAlsgspqvLVERSFKGwKEIEYEVVRDAADNCITVCNMENFDPLGIHtgdsIV----VAPSQTLS 755
                  555666666666666655555553.3333333333555555444444443555566666666666666665555542222111122....33444333 PP

                  ...HHHHHHHHHHHHTTSTT--EEEEEEEEESS...SEEEEEEESS-- CS
  ATP-grasp_3 117 ...keevvelaeevvekleglaGyvGvDlvlkd..eepyviEvNPRlt 159
                       +++++a +v +++ g++G   +   l    e+  +iEvN+Rl 
   KOO22185.1 756 naeYMKLRSVAIKVARHI-GIVGECNIQYALDPdsEDYFIIEVNARLS 802
                  111567888999999999.9999999998887555677799*****85 PP

  == domain 2  score: 19.4 bits;  conditional E-value: 6e-07
                   TSHHHHHHHHTTT.S---...........-EESS--SSSEEEEESS-------B--SS--TTE...............EEEE---S.EEEEEEEEE CS
  ATP-grasp_3    2 sdKlktykkLkeagvkvP.......tkleaeeleeeekklvvKprdGaggesvrvveekeeaeaaieeve........lvqefieG.kplSvslls 81  
                   +d  k+   L++ gv  P           +e +e++ +++ + p++   g ++ vv +++++e++++  +        ++++f+eG k++ v++++
   KOO22185.1 1177 EDRNKFSAILDKIGVDQPewsevtsIANAKEFCERVTYPCLIRPSYVLSGAAMKVVFNDKDLEKFLAIACdvsplhpvVISKFVEGaKEIEVDTVA 1272
                   567777778888888889776554222233446677**********99999999999999999999988899*************96689****** PP

                   .SSSEEEEEEEEEEEET....TEEEEEEE...S--...--HHHHHHHHHHHHHTTSTT--EEEEEEEEESS.SEEEEEEESS- CS
  ATP-grasp_3   82 dgekvlvlavnrqliekaekefvyaGnvt...pie...telkeevvelaeevvekleglaGyvGvDlvlkdeepyviEvNPRl 158 
                   +      + vn ++ e+ e+  v +G  t   p++   +e  ++v ++++ + ++l +++G + + l+ kd+e  viE N R 
   KOO22185.1 1273 KD----GVIVNYAVGEHVENAGVHSGDATlmlPAQklyVETCRRVKRIMRAIAKEL-NINGPFNIQLLSKDNEVKVIEANVRA 1350
                   66....67788888888888899999877222332111344566667777777777.***********************995 PP

>> Peptidase_C26  Peptidase C26
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.3   5.3e-06    0.0073     103     216 .]     374     469 ..     363     469 .. 0.64
   2 ?   -1.8   0.1       1.5   2.1e+03     167     196 ..    1245    1277 ..    1227    1288 .. 0.78

  Alignments for each domain:
  == domain 1  score: 16.1 bits;  conditional E-value: 5.3e-06
  Peptidase_C26 103 ergvPilgiCrGlqllnvalGGtlyqdieeqsgltdhreheqsaashavkvekgsllaellgseeievnslHhqaike..laeelrveAvae.Dgv 195
                    +  +P++giC+G ql++ a G ++y+  +    +         a++  +++++g+++  + +         H +a++   + e+++   v + Dg 
     KOO22185.1 374 ADFKPVFGICLGNQLIALAAGCKTYKMKYG---NR-------GANQPCIDTRTGRCYITAQN---------HGFAVDVstIPEGYQQLFVNAnDGS 450
                    4568*******************9987663...22.......23334466677776666555.........5555443335566554443333777 PP

  Peptidase_C26 196 iEaieseeakafvlgvQwHPE 216
                     E + + +++  +++vQ+HPE
     KOO22185.1 451 NEGLIHSTKN--IFSVQFHPE 469
                    7777777644..777888887 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 1.5
  Peptidase_C26  167 eievnslHhqaike...laeelrveAvaeDgvi 196 
                       +v  lH   i++    a+e++v  va+Dgvi
     KOO22185.1 1245 ACDVSPLHPVVISKfveGAKEIEVDTVAKDGVI 1277
                     567888899888886556999**********99 PP

>> Nif11  Nif11 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.7   0.0   0.00037      0.51       9      42 ..     632     665 ..     625     669 .. 0.77
   2 ?   -2.6   0.1       5.2   7.2e+03      26      38 ..     682     694 ..     682     695 .. 0.85
   3 ?    0.5   0.0      0.56   7.7e+02      16      43 ..     921     949 ..     886     951 .. 0.74
   4 ?    0.3   0.0      0.65     9e+02       9      41 ..     962     997 ..     962     998 .. 0.86

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00037
       Nif11   9 Flekvkq.DpalreqlkacsdheevvalAkeaGye 42 
                 F ek+++  + ++e l+a +++e+vva A+++Gy 
  KOO22185.1 632 FAEKLREiHEKIAEGLTA-ETPEDVVACARKLGYP 665
                 666666666667777777.5**************6 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 5.2
       Nif11  26 csdheevvalAke 38 
                 +s++ee++alA +
  KOO22185.1 682 ASNDEECLALATQ 694
                 5899******976 PP

  == domain 3  score: 0.5 bits;  conditional E-value: 0.56
       Nif11  16 Dpalreqlkacsdheev..valAkeaGyef 43 
                  ++++++l++  ++  v  +a A e+Gy++
  KOO22185.1 921 EESFKHELANP-TDRRVwaLAAAFEYGYTV 949
                 78999999999.556662245555666665 PP

  == domain 4  score: 0.3 bits;  conditional E-value: 0.65
       Nif11   9 FlekvkqDpalreqlkacsdheev....valAkeaGy 41 
                 Fl k+ + + lr  lk+  +++ v    ++ Ak++G+
  KOO22185.1 962 FLSKLHHVHKLRCALKQL-TPQTVtsdmLRHAKQQGF 997
                 899999999999999999.77777777799******9 PP

>> GARS_A  Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.3   0.0      0.55   7.7e+02      11     101 ..     637     721 ..     629     759 .. 0.81
   2 ?   11.0   0.1   0.00019      0.26       8     188 ..    1184    1349 ..    1179    1352 .. 0.76

  Alignments for each domain:
  == domain 1  score: -0.3 bits;  conditional E-value: 0.55
                 HHTT--B--EEEESSHHHHHHHHHHHSSSEEEEEESC-GGGT-EEEESSHHHHHHHHHHHCTS-TTCCCCSSEEEEE---S.EEEEEEEEEC CS
      GARS_A  11 kkagiptaeyeaftdpeeakeyieeatakalVvKadglaagKgvivakseeealkavkeilekkkfGeagekvviEelleG.eEvsllalvd 101
                 ++++ ++ae  + + pe++ +  ++++ ++ +++a+   +g g   a++ ee l+ +++ l+    G  + +v++E   +G +E+   ++ d
  KOO22185.1 637 REIHEKIAEGLTAETPEDVVACARKLGYPV-ILRAAFALGGLGSGFASNDEECLALATQALS----G--SPQVLVERSFKGwKEIEYEVVRD 721
                 445557888888889999999999999999.888888888999999**********999997....5..8999***9999955666666655 PP

  == domain 2  score: 11.0 bits;  conditional E-value: 0.00019
                  HHHHHTT--B--EEEESSHHHHHHHHHHHSSSEEEEEESC-GGGT-EEEESSHHHHHHHHHHHCTS-TTCCCCSSEEEEE---S.EEEEEEEEECTT CS
      GARS_A    8 dllkkagiptaeyeaftdpeeakeyieeatakalVvKadglaagKgvivakseeealkavkeilekkkfGeagekvviEelleG.eEvsllalvdgk 103 
                  ++l+k+g+  +e++++t+ ++ake+ e++t +   ++++ + +g  ++v+ + ++  k ++   +     +  + vvi +++eG +E+ + ++ +  
  KOO22185.1 1184 AILDKIGVDQPEWSEVTSIANAKEFCERVTYPC-LIRPSYVLSGAAMKVVFNDKDLEKFLAIACD----VSPLHPVVISKFVEGaKEIEVDTVAKDG 1275
                  5799*****************************.9*************99888776666655554....45689*********95589998887776 PP

                  EEEE---BEEEEEEECCCEEEEECECEEEES-TTS-HHHHHHHHHHTHHHHHHHHHCTT---EEEEEEEEEEETTEEEEEEEESS CS
      GARS_A  104 tvkplplaqdhkrvlegDkgpnTGGmGayspapvvteellekikeeileptveglkkegipfkGvLyaglmlvedgpkvlefnvR 188 
                   +++ ++            g+  G    + pa  +  e+++++k  i++ ++++l+ +     G    +l+  ++  kv+e nvR
  KOO22185.1 1276 VIVNYAVGEHVE-----NAGVHSGDATLMLPAQKLYVETCRRVKR-IMRAIAKELNIN-----GPFNIQLLSKDNEVKVIEANVR 1349
                  666666554322.....3577777777777888888888888776.777777777665.....4445566666777888888888 PP

>> DOCK_N  DOCK N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   0.0   0.00024      0.34      44     105 ..     962    1023 ..     944    1067 .. 0.85

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.00024
      DOCK_N   44 fdklsklieeLdlaRrqlLsgvltadelkelrektvwrLvrgNkllglDviVRdpegrgrvd 105 
                  f +  +++++L  a +ql  +++t+d l+  +++  ++   +N + + D++VR  ++ + ++
  KOO22185.1  962 FLSKLHHVHKLRCALKQLTPQTVTSDMLRHAKQQGFADSQIANAMGCDDMVVRTRRKAEGIT 1023
                  555568999********************************************988766655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1581 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       540  (0.0301188); expected 358.6 (0.02)
Passed bias filter:                      498  (0.0277762); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                        13  (0.000725082); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 0.95u 0.29s 00:00:01.24 Elapsed: 00:00:00.46
# Mc/sec: 10225.84
//
Query:       KOO22186.1  [L=565]
Description: hypothetical protein Ctob_008252 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.5e-07   31.8   7.7    3.2e-07   30.8   7.7    1.5  1  GPS       GPCR proteolysis site, GPS, motif


Domain annotation for each model (and alignments):
>> GPS  GPCR proteolysis site, GPS, motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.8   7.7   1.8e-11   3.2e-07       2      42 ..     281     317 ..     280     317 .. 0.90

  Alignments for each domain:
  == domain 1  score: 30.8 bits;  conditional E-value: 1.8e-11
         GPS   2 sCvfWdeeneetgsWsteGCeltesdnknetvCsCnHLtsF 42 
                  C fW   ne++ sWst+GC +t +  + ++ CsC+HLt F
  KOO22186.1 281 ECRFW---NETEDSWSTNGCATTMG-ADGSVGCSCTHLTEF 317
                 6****...67889*******97787.9999*********99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (565 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       869  (0.048469); expected 358.6 (0.02)
Passed bias filter:                      407  (0.0227007); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.57u 0.31s 00:00:00.87 Elapsed: 00:00:00.46
# Mc/sec: 3663.33
//
Query:       KOO22187.1  [L=753]
Description: adenylate guanylate cyclase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    8.2e-10   38.6   0.2    1.6e-08   34.5   0.2    2.5  1  cNMP_binding    Cyclic nucleotide-binding domain
    4.1e-09   37.0   0.2    1.1e-08   35.7   0.2    1.7  1  AAA_16          AAA ATPase domain
    2.3e-06   27.3   0.0    4.4e-06   26.4   0.0    1.4  1  Guanylate_cyc   Adenylate and Guanylate cyclase catalytic dom
     0.0001   22.1   0.1    0.00028   20.7   0.1    1.8  1  IstB_IS21       IstB-like ATP binding protein
     0.0018   17.5   0.1      0.003   16.7   0.1    1.3  1  DUF815          Protein of unknown function (DUF815)
      0.002   18.4   0.4     0.0056   16.9   0.4    1.8  1  AAA_28          AAA domain
     0.0091   16.0   0.0      0.022   14.8   0.0    1.7  1  AAA_5           AAA domain (dynein-related subfamily)
  ------ inclusion threshold ------
      0.021   14.6   0.1      0.052   13.3   0.1    1.6  1  AAA_29          P-loop containing region of AAA domain
      0.026   14.8   0.0       0.13   12.5   0.0    2.1  2  AAA_22          AAA domain
      0.039   13.3   0.1      0.082   12.2   0.1    1.5  1  FtsK_SpoIIIE    FtsK/SpoIIIE family
      0.092   12.9   0.9       0.28   11.3   0.3    2.2  2  AAA_33          AAA domain
      0.094   13.2   0.0        0.4   11.2   0.0    2.1  2  ABC_tran        ABC transporter
       0.11   12.4   0.4       0.25   11.2   0.4    1.6  1  Activator-TraM  Transcriptional activator TraM
       0.14   11.4   0.1       0.25   10.6   0.1    1.3  1  AAA_8           P-loop containing dynein motor region D4
       0.18   11.2   0.0       0.28   10.6   0.0    1.2  1  SMC_N           RecF/RecN/SMC N terminal domain


Domain annotation for each model (and alignments):
>> cNMP_binding  Cyclic nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.5   0.2   1.3e-11   1.6e-08       3      87 ..       5     104 ..       3     106 .. 0.78

  Alignments for each domain:
  == domain 1  score: 34.5 bits;  conditional E-value: 1.3e-11
                   EE-TT-EEE-TTSB-SEEEEEEES-EEEE.........EEETTS.EEEEEEE.....-TTEEESHHHHHHTS--SSEEEESST.EEEEEEEHHHHHH CS
  cNMP_binding   3 sfkagevifrqGdpadslyivlsGevrvy.........rlsedgkevvlavl.....gpGdlfGelalltgeprtatvvAltd.sellalprddfle 84 
                   + ka + ++ +Gd+++++y++ +Gev+v          r s++   ++++++       G++fGe+al ++ prtat+++++d + l++l+r +f++
    KOO22187.1   5 EAKAQDQLLNEGDEGQHCYLLDRGEVSVKvkgvetdriRASDQVLPTIFGEMtalgeIFGEIFGEIALTYDVPRTATIEVVSDtASLFRLDRLAFRR 101
                   5689999******************99964555554322222222234444466666679*********************9989************ PP

                   HHH CS
  cNMP_binding  85 llq 87 
                   +lq
    KOO22187.1 102 ALQ 104
                   997 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.7   0.2   8.9e-12   1.1e-08       4     107 ..     220     370 ..     219     419 .. 0.63

  Alignments for each domain:
  == domain 1  score: 35.7 bits;  conditional E-value: 8.9e-12
      AAA_16   4 GReeeleqLlsale..rvrsgrpelvllsGesGvGKsslvrellralekdggiflrgkcdqlesaipysalaqalareellrqlldeaesaeleawrek 100
                 GR++e++qL+ +l+   v  g+++ ++l+G++G+GKs+lv +l++   k+  +++r++ +++         a +l r +  ++  +++ + +++a+ e 
  KOO22187.1 220 GRDAEVNQLRGLLSnlLVYHGGSGHLMLIGAKGSGKSALVAALAEFGAKASLHVIRTEIRDH---------AAQL-RAQRRTERITATMT-KFAAHGEP 307
                 9*************766667777*********************766666699999999999.........3333.22333444444333.33333333 PP

      AAA_16 101 leeala........................................................a 107
                 +++a++                                                        +
  KOO22187.1 308 ILRAATerhrerqlsvlgrahtgttllpplpnmdheavpeptrsktmpsdmrhsteplahppP 370
                 333333344444444444555555556666666666666666555555555555555555442 PP

>> Guanylate_cyc  Adenylate and Guanylate cyclase catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.4   0.0   3.7e-09   4.4e-06     104     177 ..     116     193 ..      87     197 .. 0.83

  Alignments for each domain:
  == domain 1  score: 26.4 bits;  conditional E-value: 3.7e-09
  Guanylate_cyc 104 vGihtGpvvagviG.akkprydvwGntvnlAsrmestgka....gkiqvseetyellkeeqfeltergevevkGkgkle 177
                    +Gi tG++++g++G  ++++++  G++vn+A+r  +++ a    +++   e t++  +  +++++ + ++++kGk  ++
     KOO22187.1 116 IGIGTGRIFCGTVGtLERREFTTMGDAVNVAARCMQLASAlnapSRVICDEPTMSHTR-ANIHYNPLPPIKLKGKAAQM 193
                    9*************999****************9988875111156767788887777.999***********986554 PP

>> IstB_IS21  IstB-like ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.7   0.1   2.4e-07   0.00028      48     107 ..     243     302 ..     201     309 .. 0.87

  Alignments for each domain:
  == domain 1  score: 20.7 bits;  conditional E-value: 2.4e-07
   IstB_IS21  48 enivllGpsGvGKshlaialgveavraglsvlfvrvedLveelkrarrdgklaralkrll 107
                   ++l+G  G GKs l +al+  +++a l+v+ + ++d  ++l+++rr ++++ ++++++
  KOO22187.1 243 GHLMLIGAKGSGKSALVAALAEFGAKASLHVIRTEIRDHAAQLRAQRRTERITATMTKFA 302
                 5689*************************************************9999876 PP

>> DUF815  Protein of unknown function (DUF815)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.1   2.5e-06     0.003      53      88 ..     242     277 ..     220     297 .. 0.83

  Alignments for each domain:
  == domain 1  score: 16.7 bits;  conditional E-value: 2.5e-06
      DUF815  53 annvLLwGarGtGKSslvkallneyaeegLrlieve 88 
                 + +++L+Ga+G+GKS+lv al +  a+++L++i  e
  KOO22187.1 242 SGHLMLIGAKGSGKSALVAALAEFGAKASLHVIRTE 277
                 5699******************9999999*999755 PP

>> AAA_28  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   0.4   4.7e-06    0.0056       3      68 ..     246     317 ..     244     326 .. 0.63

  Alignments for each domain:
  == domain 1  score: 16.9 bits;  conditional E-value: 4.7e-06
      AAA_28   3 vitGgestGKTtlleaLaargypvvpEaareileeklakgedalp.....wv.edllafaervleeqleeea 68 
                 +++G+ ++GK+ l++aLa+ g +    + r+ +++++a+ + + +     ++  ++ a  e +l+++ e+++
  KOO22187.1 246 MLIGAKGSGKSALVAALAEFGAKASLHVIRTEIRDHAAQLRAQRRteritATmTKFAAHGEPILRAATERHR 317
                 69****************998886666666666666655554433111103333444444555555555555 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.0   1.8e-05     0.022       1      63 [.     244     312 ..     244     326 .. 0.80

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 1.8e-05
                 EEEEE--SSSSHHHHHHHGGGGB.S--EEEEE--TT--HHHHH--B--..............------- CS
       AAA_5   1 dvlLvGppGtgKselaerlaaal.nreveyvqltrdtteedlkgrreik.....ngttslvdsplvraa 63 
                 +++L+G++G+gKs l+  la++  +++++++    +  +++l+ +r+++     + + + +  p+ raa
  KOO22187.1 244 HLMLIGAKGSGKSALVAALAEFGaKASLHVIRTEIRDHAAQLRAQRRTEritatMTKFAAHGEPILRAA 312
                 79*******************999999999988888888888888887666655555555555666655 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.1   4.3e-05     0.052      23      42 ..     243     262 ..     233     265 .. 0.85

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 4.3e-05
      AAA_29  23 gatlltGpsGsGKSTllDAi 42 
                 g  +l+G+ GsGKS+l+ A+
  KOO22187.1 243 GHLMLIGAKGSGKSALVAAL 262
                 5789************9886 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   0.00011      0.13       4      30 ..     241     267 ..     238     329 .. 0.79
   2 ?   -1.5   0.0       2.3   2.7e+03      17      70 ..     546     612 ..     540     633 .. 0.63

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 0.00011
      AAA_22   4 tagilvvtGesGtGKTtllrrlleqld 30 
                 + g+l+++G +G+GK+ l++ l+e   
  KOO22187.1 241 GSGHLMLIGAKGSGKSALVAALAEFGA 267
                 5799*****************999753 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 2.3
      AAA_22  17 GKTtllrrlleqldeeakaee.........erpevv....fvtlpsstsskdllrellralglelka 70 
                 GK + ++++l  lde+              +++e+v    + tl+++ ++ ++++e+l+ ++    a
  KOO22187.1 546 GKPVFIETMLALLDEQGLLSFtfdeeglldAGAEIVrevpEETLQALPTPHNICSEFLQLFEGLDAA 612
                 6667777777777666555556666666665555555434556666669999999999888854444 PP

>> FtsK_SpoIIIE  FtsK/SpoIIIE family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.1   6.9e-05     0.082      39      59 ..     240     262 ..     208     263 .. 0.79

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 6.9e-05
                   -...SEEEE--TTSSHHHHHHHH CS
  FtsK_SpoIIIE  39 a..shllvaGatgsGKStalntL 59 
                      +hl+++Ga+gsGKS  + +L
    KOO22187.1 240 GgsGHLMLIGAKGSGKSALVAAL 262
                   1458*************999887 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.0       4.9   5.9e+03      56      79 ..     147     168 ..     131     175 .. 0.56
   2 ?   11.3   0.3   0.00024      0.28       3      82 ..     246     317 ..     245     331 .. 0.59

  Alignments for each domain:
  == domain 1  score: -2.7 bits;  conditional E-value: 4.9
      AAA_33  56 yqilnelarkalsagrnvildatn 79 
                  +++ +la +al a   vi d + 
  KOO22187.1 147 ARCM-QLA-SALNAPSRVICDEPT 168
                 3333.333.455555555555554 PP

  == domain 2  score: 11.3 bits;  conditional E-value: 0.00024
      AAA_33   3 llvGlpGsGKstlaerllkklgavllssdtlrrrlfgtdqqsktdytrvldrlyqilnelarkalsagrnvildatnlsr 82 
                 +l+G++GsGKs l+  l+ +  +   s  ++r+ ++         + r+  r+ +i+ ++ +k +++g +++  at + r
  KOO22187.1 246 MLIGAKGSGKSALVAALA-EF-GAKASLHVIRTEIRDHAA-----QLRAQRRTERIT-ATMTKFAAHGEPILRAATERHR 317
                 89**************99.33.334444555555553222.....233333444444.5555666677766655554444 PP

>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.0       2.6   3.1e+03     122     136 ..     154     168 ..     147     169 .. 0.77
   2 ?   11.2   0.0   0.00033       0.4      13      42 ..     244     273 ..     233     411 .. 0.81

  Alignments for each domain:
  == domain 1  score: -1.4 bits;  conditional E-value: 2.6
                 HHHHTSSEEEEESTT CS
                 xxxxxxxxxxxxxxx RF
    ABC_tran 122 allkkpkllllDEpt 136
                 + l++p+ +++DEpt
  KOO22187.1 154 SALNAPSRVICDEPT 168
                 456889999*****9 PP

  == domain 2  score: 11.2 bits;  conditional E-value: 0.00033
                 EEEEEESTTSSHHHHHHHHTTSS--SEEEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  13 kvaivGenGaGKStLlkllagllkpteGei 42 
                  + ++G  G+GKS L+++la+   +++ ++
  KOO22187.1 244 HLMLIGAKGSGKSALVAALAEFGAKASLHV 273
                 5789***************99876544444 PP

>> Activator-TraM  Transcriptional activator TraM
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.4   0.00021      0.25      76     127 ..     250     302 ..     244     313 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00021
  Activator-TraM  76 alaaskealvkllqeg.akeaaevvrkeveaalarlkssirearrvallnlva 127
                     a  + k alv++l e+ ak++ +v+r+e+ +  a+l+++ r  r  a+++  a
      KOO22187.1 250 AKGSGKSALVAALAEFgAKASLHVIRTEIRDHAAQLRAQRRTERITATMTKFA 302
                     667889*******99548999*****************999888888887655 PP

>> AAA_8  P-loop containing dynein motor region D4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.1   0.00021      0.25      24      55 ..     242     274 ..     237     307 .. 0.81

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00021
       AAA_8  24 rghaLlvGvgGsGrqslt.kLAafiaelelfqi 55 
                 +gh++l+G +GsG+  l+  LA f a+ +l  i
  KOO22187.1 242 SGHLMLIGAKGSGKSALVaALAEFGAKASLHVI 274
                 69************9985268888777666555 PP

>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0   0.00024      0.28      23      63 ..     241     280 ..     222     322 .. 0.72

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00024
                 TSSEEEEEESTTSSHHHHHHHHHHHCTT.TTTTTTCHCCCC CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N  23 sksftaivGpNGSGKsnlldAilFvLGersakklrseklsd 63 
                  +++ +++G+ GSGKs l+ A+   +G +++ ++ +++++d
  KOO22187.1 241 GSGHLMLIGAKGSGKSALVAAL-AEFGAKASLHVIRTEIRD 280
                 5678899**************9.677777665555444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (753 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       508  (0.028334); expected 358.6 (0.02)
Passed bias filter:                      430  (0.0239835); expected 358.6 (0.02)
Passed Vit filter:                        72  (0.00401584); expected 17.9 (0.001)
Passed Fwd filter:                        15  (0.000836633); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              15  [number of targets reported over threshold]
# CPU time: 0.66u 0.29s 00:00:00.95 Elapsed: 00:00:00.44
# Mc/sec: 5138.88
//
Query:       KOO22188.1  [L=44]
Description: hypothetical protein Ctob_008250, partial [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (44 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       148  (0.00825478); expected 358.6 (0.02)
Passed bias filter:                      109  (0.00607954); expected 358.6 (0.02)
Passed Vit filter:                         4  (0.000223102); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.25s 00:00:00.54 Elapsed: 00:00:00.38
# Mc/sec: 351.39
//
Query:       KOO22189.1  [L=545]
Description: polycystic kidney disease protein-2 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    2.4e-29  102.3  13.8    2.4e-29  102.3  13.8    1.5  2  PKD_channel  Polycystin cation channel
    5.6e-12   45.4  16.1    7.9e-12   44.9  16.1    1.2  1  Ion_trans    Ion transport protein


Domain annotation for each model (and alignments):
>> PKD_channel  Polycystin cation channel
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.0      0.12   1.1e+03      80     131 ..      25      82 ..      12      86 .. 0.61
   2 !  102.3  13.8   2.7e-33   2.4e-29     136     422 ..     153     441 ..     149     445 .. 0.85

  Alignments for each domain:
  == domain 1  score: -2.0 bits;  conditional E-value: 0.12
                  TTSB--.........S--TT--STTSS---TTTTT......---EE-SSSEE-S-SEEE CS
  PKD_channel  80 ldkedkkeYsasWs.kkvvdkskeafiykpekele......gvkhwGvlasYpsgGYvv 131
                  l+ +d++ ++ +W+ +++   s+  + y++ +e         +    +   YpsgGY +
   KOO22189.1  25 LQYQDTEPFGYNWTnASASVLSNPFRYYSA-AEAGtlpngpVSANPASFRRYPSGGYLS 82 
                  455677788888884333333333444444.3222244444455566788899999976 PP

  == domain 2  score: 102.3 bits;  conditional E-value: 2.7e-33
                  SHHHHHHHHHHHHHTTSS-TTEEEEEEEEEEEETTTTEEEEEEEEEE--TTSS-EEEEEEEEE------SHHHHHHHHHHHHHHHHHHHHHHHHH--- CS
  PKD_channel 136 sreeslkrlaeLkeknWLDrrtravfvdftlYnadinlfcvvtllvEvpalGgvlpsvsvqsvkLlryvtklslflllievvfvvfvlyfvveeilki 233
                  +r+  ++  ++Lk+++ +D+ trav + ++  + ++ + +  ++++E++++G vl+s ++q+    + ++ l+++     +v + f  +f + e++++
   KOO22189.1 153 TRAAVTEFWNDLKRAHYIDSATRAVTITWSASSNAAAVTSRSQFMFEFTPTGAVLASYQMQTRV--DRDDMLDSTEFY-ALVSLGFTAFFGFIELMEL 247
                  56666777899**************************************************964..444444444444.45788999999999***** PP

                  -----------HHHHHHHHHHHHHHHHHHH.....HHHHHHHHHHHHHHHH-SSS----HHHHHHHHHHHHHHHHHHHHHHHGGGGG--.-------- CS
  PKD_channel 234 rkerasylrsvwnlldlaivvlsvvlivla.....ilrevlakkllkkveaekeefldFrevaqldqllriilavlvflttlkllkvlr.fnktlsll 325
                  r   + y++++wnl+d a +v+++++ ++      ++r++  +  + + + + + ++d  ev  +++ ++  l + v++ +lk++k++  +++++ l+
   KOO22189.1 248 RAGILTYFSNMWNLMDWANYVIFIIAWLYLgqyvdLARSS--ATACSSTLCKRVGYQDHWEVMAVNSDAKSYLSLCVCIQLLKVIKFSAmLVPKMDLA 343
                  *999************988888777665431110123333..233444457999*********************************963689***** PP

                  --------------HHHHHHHHHHHHHHHHHHSSSS-STTSSHHHHHHHHHHHHTT---HHHH.HHH-TTHHHHHHHHHHHHHHHHHHHHHHHHHHT- CS
  PKD_channel 326 tktlaralkdvlgfalvivilflayaqlgvllfGtqasnfsnlvksiltlfrlilgdfqytel.esgnrvLGpllllalvflvifillnlflaiinds 422
                   k+l++al+d++ f +v+ i +la+ ++ ++  G  + ++s  + s+++l r + gdf+  e+ ++    +  +l++a+ f+ +fill +f ai+ ++
   KOO22189.1 344 PKVLKNALPDLIFFGIVFGISLLAFSMMFYVTLGPVMGDYSSQMASVVALCRALFGDFDIDEIiNNSSGYMNAILFIAYLFVAVFILLSMFFAILGEA 441
                  *************************************************************8725566799***********************9876 PP

>> Ion_trans  Ion transport protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.9  16.1   8.8e-16   7.9e-12      21     242 ..     212     447 ..     190     450 .. 0.80

  Alignments for each domain:
  == domain 1  score: 44.9 bits;  conditional E-value: 8.8e-16
                 CCCSSSSHHHHC..HHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHCHSHHHHHHHHHHHHHHHHH...............HHHH............. CS
   Ion_trans  21 letyfpedelek..tileilelvftaiftlemllkilalgllikkrYlrdpwnilDflvvlpsllsl...............vlse............. 89 
                 ++t  ++d++ +  ++   + l fta+f +  l++++a g+   ++Y++++wn++D+   +++++ +                                
  KOO22189.1 212 MQTRVDRDDMLDstEFYALVSLGFTAFFGFIELMELRA-GI---LTYFSNMWNLMDWANYVIFIIAWlylgqyvdlarssatA--Csstlckrvgyqdh 304
                 44444444555467999999*****************9.55...5********************887777777666555551..04556666677777 PP

                 ........HHHHHHHHHHHHGGGGGGHHHCH.SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCCCCSCCSTSSSTTTSSSSSSH CS
   Ion_trans  90 ........esllllsvlrlfrvlrllklisr.leglrtlvtalirsvkdllnvlllllvvlfifaligvqlfkgklreknecaktwenpnngntnFdnf 179
                          + + ls+  ++++l+++k+  + ++++    + l+++++dl+ + +++ + l++f+++++                  +p  g+++  + 
  KOO22189.1 305 wevmavnsDAKSYLSLCVCIQLLKVIKFSAMlVPKMDLAPKVLKNALPDLIFFGIVFGISLLAFSMMFYVTL---------------GPVMGDYS--SQ 386
                 7888756555566666666666666666655146699999****************************9999...............56555555..99 PP

                 HHHHHHHHHHHTTS.SHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
   Ion_trans 180 ftallwlfrlmtte.gwgdilyatldekskvaliyfvifiilgsflllNlliaviadnfqelte 242
                 + ++++l r ++++ +  +i+++  +++   + i+f++++++++f+ll++++a+  ++ + +++
  KOO22189.1 387 MASVVALCRALFGDfDIDEIINNSSGYM---NAILFIAYLFVAVFILLSMFFAILGEAQATIRD 447
                 9************************999...***********************9998777766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (545 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       832  (0.0464053); expected 358.6 (0.02)
Passed bias filter:                      461  (0.0257125); expected 358.6 (0.02)
Passed Vit filter:                        48  (0.00267723); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.60u 0.25s 00:00:00.85 Elapsed: 00:00:00.43
# Mc/sec: 3824.41
//
Query:       KOO22190.1  [L=947]
Description: anoctamin-like protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    2.2e-99  333.4  10.7    2.6e-99  333.1  10.7    1.1  1  Anoctamin    Calcium-activated chloride channel
    4.3e-06   26.6   0.0    0.00037   20.3   0.0    2.3  2  Anoct_dimer  Dimerisation domain of Ca+-activated chloride-ch
  ------ inclusion threshold ------
        2.8    7.5   7.0       0.27   10.8   1.2    2.2  2  YhhN         YhhN family


Domain annotation for each model (and alignments):
>> Anoctamin  Calcium-activated chloride channel
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  333.1  10.7  4.4e-103   2.6e-99       1     447 [.     213     751 ..     213     753 .. 0.83

  Alignments for each domain:
  == domain 1  score: 333.1 bits;  conditional E-value: 4.4e-103
   Anoctamin   1 IrdyFGekiAlYFawlgfytsallppavlGlllflyglati.tlfdneltvvfalfmviWatlflelWkrreaelaykWgtsdfeeeeeprpefrgelk 98 
                 +rdyFGe+iA+Y+a+ +   +a  +p ++G++lf+++++ +  + dn +t+++++f+ +W t fl+ W+r ea+la +W++ d++e e++r+ef+g+  
  KOO22190.1 213 VRDYFGERIAFYYAFTEELANAIRYPGAMGVVLFIVSEVWYdGSTDNMFTPMYSMFILVWITYFLKRWRRAEARLAAHWHVVDYRETERQRKEFEGDEA 311
                 79*********************************5444443678999*************************************************99 PP

   Anoctamin  99 r....................espvtgeeefyyppwkrrlfrllvslplvllliclavvgvlilrclalqelvssvke.............llsflptv 164
                 r                    + p t++  + + + +  ++ +++ +p++l++i+ ++ ++l ++ l++ +++   ++             l s +  +
  KOO22190.1 312 RgfysdegywvpvpdddeyaaKAPLTKRFSTTVRRER-MVISYVLLTPVLLCMIT-MITMILSYKSLEMLQFYLLYETdgnprtlgkdgvqLGSAMMGA 408
                 9**********99999877764466665555554444.66666666666655543.7888999999999666665555799999888866655599999 PP

   Anoctamin 165 lnlvlililnevykklaiwltdlEnhrtqseyekslilKvflfqfvnsylslfyiaFvkg..........kflkypgkylr.................. 235
                 +n v + ++n+vy+++a++ltd+Enhrt s+y+++li+K+++fq  nsy+ +fyiaFvk           +                            
  KOO22190.1 409 INGVYVAVSNQVYQRVARRLTDWENHRTLSDYDDALIVKTMIFQSTNSYAAFFYIAFVKAneldwlswltH---------Vpeychdkkhftltveqie 498
                 **********************************************************9966666654441.........0444445666888899999 PP

   Anoctamin 236 .rseecdeegcleelkeqLaiilvtkqllnnilevllPylkeklkk.........................kkk..........esekdekeeeeskkl 298
                  + e++++  c+++l+  + + l+++ l   ile+++P++k kl++                           +          + ++ + e+   + +
  KOO22190.1 499 aQFEHHQNPYCMNDLSAFMTSALIVNMLTGKILEFVMPWMKAKLREadeefamfaaqtakeetaiericfkM-RvlcgghsaavKIAEASGEQVVISAM 596
                 9999************************************88877777777777777766666665555550.15555555554333333333445678 PP

   Anoctamin 299 tqaekeyelkkyedlfddYlemviqfGyvtlFsaafPlapllallnniieirldafklvtelrRpvperaesiGiWqkilealgvlavitnallialts 397
                 t +e +++l+++e +f +Y  +v+q Gyv+lF++afPla +l +   ++e+r+da+k+v+ +rRp     e+iG Wq++l++l+vl+v+tn+ l+ +t 
  KOO22190.1 597 TVYEAQAKLEPFEGVFSEYSRIVVQLGYVVLFAPAFPLASALLFASFYFELRTDAYKMVCNTRRPAYMGGEDIGSWQTVLRVLAVLGVLTNVGLVGVTD 695
                 88889999***************************************************************************************8887 PP

   Anoctamin 398 d.p......ekdteqyl.svlaarlafvvvlehvvlllkyliavlipdipkwvkeeik 447
                 +        +     ++   ++++l+f++v+eh++ll ++++ ++ipd+p++++ e +
  KOO22190.1 696 TtLkriipfN--FLGFIeINESNKLMFLIVVEHLLLLAQFCVVTMIPDMPEDLAVETA 751
                 6424555442..222330458899****************************998876 PP

>> Anoct_dimer  Dimerisation domain of Ca+-activated chloride-channel, anoctamin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.0   0.0     0.003        18      43      87 ..      70     114 ..      12     123 .. 0.73
   2 !   20.3   0.0   6.3e-08   0.00037     124     195 ..     118     187 ..     107     210 .. 0.84

  Alignments for each domain:
  == domain 1  score: 5.0 bits;  conditional E-value: 0.003
  Anoct_dimer  43 eGLelekeeeeekkkklvFvkihaPwevlcryAEilklkmplkkk 87 
                    + +e   + +++++ v +k++aP  +l + AE l +   lk++
   KOO22190.1  70 RSIGIEAVADLSRDRDEVLLKLSAPDALLEKMAEHLTMEKGLKAD 114
                  4455666666667999999*******************9988853 PP

  == domain 2  score: 20.3 bits;  conditional E-value: 6.3e-08
  Anoct_dimer 124 kkyltapfsreklelFlikdkdtfFtsaqRsrivyeILkrtkykekkkkkvGierLlaegvYtaayPLHdge 195
                  ++ + + f+  ++e+F+ ++  +fF+s +R+r+++ +L+  +   +    + ++ Lla +v+ta  P H+ e
   KOO22190.1 118 REGYYTDFKAAEKERFEPESPTCFFSSLERIRLLQSLLELPQH--EGGCGLNLDDLLATKVFTAVVPVHEIE 187
                  4557789********************************9998..667899******************965 PP

>> YhhN  YhhN family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   1.2   4.5e-05      0.27     129     175 ..     229     277 ..     220     280 .. 0.89
   2 ?   -2.1   0.5      0.43   2.6e+03      79     107 ..     352     380 ..     340     386 .. 0.66

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 4.5e-05
        YhhN 129 lslsslaallaalGallFviSDlll..ainkfvrklpaarllvmitYfa 175
                 + l++  ++ +a+G +lF++S +    +++  + ++  + +lv+itYf+
  KOO22190.1 229 EELANAIRYPGAMGVVLFIVSEVWYdgSTDNMFTPMYSMFILVWITYFL 277
                 5789999******************99999999**************97 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 0.43
        YhhN  79 tlslllllllllaaavllalllprlgklk 107
                 +  ll+ +ll++++++ ++l +++l+ l+
  KOO22190.1 352 SYVLLTPVLLCMITMITMILSYKSLEMLQ 380
                 55667777888888888887887775544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (947 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       625  (0.0348597); expected 358.6 (0.02)
Passed bias filter:                      443  (0.0247086); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.73u 0.26s 00:00:00.99 Elapsed: 00:00:00.42
# Mc/sec: 6697.45
//
Query:       KOO22191.1  [L=355]
Description: drug metabolite transporter superfamily [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.1e-20   72.3  13.9    6.2e-20   71.7  13.9    1.3  1  TPT       Triose-phosphate Transporter family


Domain annotation for each model (and alignments):
>> TPT  Triose-phosphate Transporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   71.7  13.9   3.5e-24   6.2e-20      14     289 ..      15     308 ..       2     309 .. 0.82

  Alignments for each domain:
  == domain 1  score: 71.7 bits;  conditional E-value: 3.5e-24
         TPT  14 nvvfnilnKkilnv.fpyPltvsavqllvgsvlilvlwalglkkrpkisseflkailplalvktlghvlavvslskvaVSfthtvKas.ePiFtvilsr 110
                 +v+  ++nK+++n  f++P+ +s ++++ ++++  +l+a+g+++ p+  ++++ + + +al+ +++  + ++sl+  +V f ++ K +  P+ t ++ +
  KOO22191.1  15 SVALVLVNKQVFNGgFHFPMSLSFFHFVFTWLWYQMLYAAGVYSNPEPGMSQVEK-FKVALFGFASIGFMNLSLNYNSVGFYQVTKLTiVPV-TLVINS 111
                 6677789******637**********************************99988.699***************************761566.556666 PP

         TPT 111 lllgeklsllvylsLlpivgGvalasvtElsFnligfisAlisnltfslrnifsKkllkklkdldalnlfaiitilslllllPvallvegvlktpsllk 209
                 + +  +++++v lsL ++++Gva+a+vt+++   +g+i  +++ l+ ++  i+     k+   ++a++l+a i+    +    v++++e +   ps   
  KOO22191.1 112 VAYAVYTTTKVKLSLAILLAGVAIATVTDVELRPTGLIFGVLAVLSTAVFQIWQGTKQKEF-GISATQLQAGIAPWQSIQAAAVSIATECYCYEPSPSG 209
                 77***********************************998888888888878765544442.3889999998888888888888888887333333322 PP

         TPT 210 st..............kvslkevllllllsgvlfhlynqvaymvLervspvthsvantvKrvvvIvlsvlvfk.....npvsllnaiGtavaivGvflY 289
                 +               +   +++l+ +l   +l  + n +++ ++ r+sp+t+ v   +K  +v++   ++f      ++  + n+ G++va++Gv+lY
  KOO22191.1 210 APcdtavrffelafagDHVKQHTLWIVLGTCILALAVNLCSFGLIGRTSPITFQVVGHAKTCLVLTGGYVFFSsgagdTQQIINNIAGVSVAMIGVLLY 308
                 2233567777777753333677788888899999**************************************633332444566888************ PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (355 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       703  (0.0392102); expected 358.6 (0.02)
Passed bias filter:                      304  (0.0169558); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.24s 00:00:00.70 Elapsed: 00:00:00.41
# Mc/sec: 2580.02
//
Query:       KOO22192.1  [L=373]
Description: hypothetical protein Ctob_004968 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    4.6e-26   92.6   0.1    4.7e-25   89.3   0.1    2.0  1  Metallophos  Calcineurin-like phosphoesterase
  ------ inclusion threshold ------
      0.085   12.9   0.3       0.25   11.4   0.3    1.8  1  TAD2         Transactivation domain 2


Domain annotation for each model (and alignments):
>> Metallophos  Calcineurin-like phosphoesterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   89.3   0.1   5.3e-29   4.7e-25       3     201 ..      47     306 ..      45     309 .. 0.75

  Alignments for each domain:
  == domain 1  score: 89.3 bits;  conditional E-value: 5.3e-29
                  EEEEESBTB....................................TTCCTHHHHHHHHHHHH.............................HHHTTES CS
  Metallophos   3 ilvigDlHl....................................algggqlddllkllddl.............................lreekpd 35 
                  ++++gD+H+                                     +   q++dll+l+++                              l + ++ 
   KOO22192.1  47 VTICGDIHGqvhacaalpaegssiapacccrpyrvsllthlralaIDSLLQFHDLLELFRNGgecpytsyifmvrprastfaaapaaglsvLTSVRRS 144
                  56666666666666666666666655555555555555555555533334444444444333444444444444433333333322222221113334 PP

                  EEEEESTSSSSSHHHHHHHHH.HHHHHHHTSEEEEEC-TTS........CHHHHHHHHHHHHHHHHHHHEHHHCEEETSEEEEEETTEEEEEEEESE. CS
  Metallophos  36 lvllaGDlvdrgdlekellel.laalvkypipvylllGNHe........gfeeellnkygylgifsepwrsdaevfnnlplaslgsgslkvlllhGg. 123
                   +   GD+vdrg  + e++ + l  + +yp+++ ll+GNHe        gf++e+++kyg+    ++pw++ +e f++ pla+l++g   vl++hGg 
   KOO22192.1 145 SLQ--GDFVDRGHNSVETMTMlLLLKARYPHRITLLRGNHEsrqitqvyGFYDECQRKYGN----ANPWKYVTELFDWCPLAALVDG--SVLCVHGGl 234
                  444..*******888888888666666669******************************9....88********************..********8 PP

                  CEEETHHHHHHHHHHHSCHHHHCC...HHHHHHHHHHTTCSEEEEEESSESSCSSSCSCCHHHHHHHHHHTTESEEEEESS CS
  Metallophos 124 spellvsldklgslnleleapepg...dewlkdlekrekadwvivlgHsplyrgsgylfgdealedllkkygvdlvisGHt 201
                  sp+   ++d+++ +++  e+p++g   d++++d        ++ + ++   +rg+g+lfg +++ ++   +g+ l++++H+
   KOO22192.1 235 SPDV-RTIDQMRMIDRKMEIPHEGafcDLMWSD--------PDDIETWAVSPRGAGWLFGAQVTSEFNALNGLELICRAHQ 306
                  8888.****************************........999999999999***************************7 PP

>> TAD2  Transactivation domain 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.3   2.8e-05      0.25       5      19 ..     258     273 ..     255     277 .. 0.88

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 2.8e-05
        TAD2   5 AmDDLmLs.PDDiEqW 19 
                 A  DLm s PDDiE W
  KOO22192.1 258 AFCDLMWSdPDDIETW 273
                 667***999******* PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (373 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       371  (0.0206927); expected 358.6 (0.02)
Passed bias filter:                      325  (0.0181271); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.47u 0.23s 00:00:00.70 Elapsed: 00:00:00.40
# Mc/sec: 2808.53
//
Query:       KOO22193.1  [L=96]
Description: cyclin-y-like protein 1-like protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (96 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       410  (0.022868); expected 358.6 (0.02)
Passed bias filter:                      292  (0.0162865); expected 358.6 (0.02)
Passed Vit filter:                         8  (0.000446204); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.22s 00:00:00.56 Elapsed: 00:00:00.36
# Mc/sec: 793.23
//
Query:       KOO22194.1  [L=435]
Description: bacterio-opsin activator [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.1e-08   35.2   0.0    2.3e-08   34.2   0.0    1.5  1  PAS_9     PAS domain
  ------ inclusion threshold ------
      0.012   15.6   0.0       0.03   14.3   0.0    1.7  1  PAS       PAS fold
      0.044   13.8   0.0       0.12   12.4   0.0    1.8  1  PAS_8     PAS domain


Domain annotation for each model (and alignments):
>> PAS_9  PAS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.2   0.0   3.8e-12   2.3e-08       2     102 ..      95     199 ..      94     201 .. 0.91

  Alignments for each domain:
  == domain 1  score: 34.2 bits;  conditional E-value: 3.8e-12
       PAS_9   2 dgilidnpdg...rilyaNeaalrllGyspeevlgksitdlf..vtdpeanerlraaleqgrkkerevevvlirkng..etfwvlltaspvkdddgelv 93 
                 d+++i np+    +i+y+ +a+ ++ Gy   e +g++ ++++  ++d+++ + +  al + +  +++v ++++r     e+fw+ l++ p++  +gelv
  KOO22194.1  95 DSVVISNPQQpcsPIVYVTNAWQDMCGYRMSEAIGQNPRCTQgeHSDKDTIRGMGVALSNQQ--ACRVRLINYRGGAnhEPFWNCLSVQPIFF-KGELV 190
                 78899889999999************************************************..**********97788************87.58999 PP

       PAS_9  94 giivilrDi 102
                 ++++ l+D 
  KOO22194.1 191 LFAARLQDY 199
                 988877775 PP

>> PAS  PAS fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   0.0     5e-06      0.03      23     110 ..     109     196 ..      88     199 .. 0.80

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 5e-06
                 EEEECHHHHHHHSSTHHHCTTSBGGGGBSTTHHHHHHHHHHHHHHHTT-ECCCCEEEEC....TTSSEEEEEEEEEEEEETTEEEEEEEEEE CS
         PAS  23 ilyvNaaaeellGlsreevlgkslldliheeddaelaelleqlleqgeesrageisfkl....rdgrpihlevraspvrdaggeilgflgvl 110
                 i+yv  a+++++G++ +e++g++      e +   +++ ++    + ++++a ++++       +++p++ ++ + p++++g+ +  f  +l
  KOO22194.1 109 IVYVTNAWQDMCGYRMSEAIGQNPRCTQGEHS---DKDTIRGMGVALSNQQACRVRLINyrggANHEPFWNCLSVQPIFFKGELV-LFAARL 196
                 89**********************98776554...78888888888888777777777777899999999999999999998765.555555 PP

>> PAS_8  PAS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   2.1e-05      0.12       2      46 ..      85     130 ..      84     151 .. 0.77

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 2.1e-05
       PAS_8   2 rlralfesspdgiavvdlgdr....ivdvNqaalellGysadlkgellg 46 
                 r+ +++++ +d++++ +  ++    iv+v +a+++++Gy+  ++++  +
  KOO22194.1  85 RIIGMLDTTQDSVVISN-PQQpcspIVYVTNAWQDMCGYR--MSEAIGQ 130
                 556789********876.2347778***************..6665553 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (435 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       318  (0.0177366); expected 358.6 (0.02)
Passed bias filter:                      262  (0.0146132); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.47u 0.21s 00:00:00.68 Elapsed: 00:00:00.41
# Mc/sec: 3166.64
//
Query:       KOO22195.1  [L=609]
Description: sodium potassium calcium exchanger 1 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.7e-30  106.0  29.3    4.2e-18   65.7   7.2    2.5  2  Na_Ca_ex  Sodium/calcium exchanger protein


Domain annotation for each model (and alignments):
>> Na_Ca_ex  Sodium/calcium exchanger protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.7   7.2   2.3e-22   4.2e-18       8     147 ..      53     192 ..      46     196 .. 0.85
   2 !   45.7  14.1   3.5e-16   6.2e-12       4     150 ..     452     597 ..     450     598 .. 0.81

  Alignments for each domain:
  == domain 1  score: 65.7 bits;  conditional E-value: 2.3e-22
                 HHHHHHHHHHHHHHHHHHHHHH..HTTCTHHHHHHHHHHHHHHHHHHHHHHHHHH.TTTHHHHHHHHHHHHHHHHHTHHHHHHHHHHBTTSSCECCHHH CS
    Na_Ca_ex   8 lslllisvladflvssaeeiak..slgisgsvlGltllAlgnslpElissiiaal.tgevdlaignvlGsnifnlllviGlialigslkvdseslkldl 103
                 +++++ +++ ++ v+++e +++   l+++  ++G t++A+gn lpEl +s++a+l +++ d+++g+v+Gs++f+ll ++G+ +++++   d+  + l  
  KOO22195.1  53 VIVVMHVLIEEWYVPALELVTSpdFLDVPRPLIGCTIMAAGNCLPELSMSLAAVLlSDSQDIGTGEVFGSCVFDLLAILGVLGILAP-EGDG--IRLAP 148
                 5677888999**********966478**************************9995788**************************77.5555..67777 PP

                 HHHHHHHHHHHHHHHHTCHHHHHHTEEHHHHHHHHHHHHHHHHH CS
    Na_Ca_ex 104 gllllvallllllvlllllplfvpgrltvleglvllllYalylv 147
                 +l l++++++ + +++   ++f + + ++  +lv+l+lY++++ 
  KOO22195.1 149 PLVLYFCAWAAIGTAADASLFFADLETMWSASLVMLALYLCFIG 192
                 77778888887766664544455******************985 PP

  == domain 2  score: 45.7 bits;  conditional E-value: 3.5e-16
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHHHHHHHHHHHT.TTHHHHHHHHHHHHHHHHHTHHHHHHHHHH.....BTTSS CS
    Na_Ca_ex   4 vlfilslllisvladflvssaeeiakslgisgsvlGltllAlgnslpElissiiaalt.gevdlaignvlGsnifnlllviGlialigs.....lkvds 96 
                 ++++ls+    +l+ ++v+ a+   + lg+ +  lG  +l+l+   p+li++++ a++ g  ++a +n +G+ +fn +  +Gl++ i +     +++ +
  KOO22195.1 452 LTLVLSISYTLLLSYVMVQIATRAICLLGVRKNALGASVLTLAAGCPDLITAMVIARRpGMLTMAAANPFGAFAFNAFAALGLPWAILGtyadiFPPAR 550
                 578899999999**********************************************666**************************885555333333 PP

                 CECCHHHHHHHHHHHHHHHHHHHTCHHHHHHTEEHHHHHHHHHHHHHHHHHHHH CS
    Na_Ca_ex  97 eslkldlgllllvallllllvlllllplfvpgrltvleglvllllYalylvlsl 150
                  ++  +l       + +++++l+ll +++ + rlt+  g+ ll+lYalyl++ +
  KOO22195.1 551 GTWYPSL-------IGFCAIALALLAIFANQLRLTRALGVYLLILYALYLAIII 597
                 3333333.......222222233333333469******************9976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (609 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       618  (0.0344693); expected 358.6 (0.02)
Passed bias filter:                      275  (0.0153383); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.55u 0.27s 00:00:00.82 Elapsed: 00:00:00.43
# Mc/sec: 4245.84
//
Query:       KOO22196.1  [L=776]
Description: DNA polymerase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.5e-74  251.4   0.0    2.1e-73  247.5   0.0    2.2  1  DNA_pol_A       DNA polymerase family A
    4.2e-09   36.4   0.0      9e-09   35.3   0.0    1.6  1  DNA_pol_A_exo1  3'-5' exonuclease


Domain annotation for each model (and alignments):
>> DNA_pol_A  DNA polymerase family A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  247.5   0.0   2.4e-77   2.1e-73      81     376 .]     453     774 ..     388     774 .. 0.92

  Alignments for each domain:
  == domain 1  score: 247.5 bits;  conditional E-value: 2.4e-77
                 HHHHHHHHTTTTGGGCCBTTTSEE--EEESSSSSSSS-EEESS-GGGS-TTSCCHHHHHHTBCG.TTCCEEEEEEETTHHHHHHHHHCT.HHHHHHHHT CS
   DNA_pol_A  81 elsklkstyvdallklinkktgrihtsfnqtvtatGrlsssepnlqnipirteegrriRkafvaeegghvllsaDysqiELRilAhlsgdeklieafke 179
                  + ++ s+++ +l++ ++ +++r+h+s+ +  t+tGrlss+ pnlqn p  ++++ riR+af+a+eg+  l+ aDy q+ELR+lAh+++ +++i+afk+
  KOO22196.1 453 AIDTMLSNFILPLQENAD-ERSRVHCSL-NLNTETGRLSSRAPNLQNQPALEKDQYRIREAFCADEGN-ALVVADYGQLELRLLAHMTDCQSMIAAFKS 548
                 456667777777777764.699*****7.789******************999************965.5***************************** PP

                 TH-HHHHHHHHHCTS.GGGHH........................HHHHHHHHHHHHHHHTT--HHHHHHHHTSSHHHHHHHHHHHHHHSHHHHHHHHH CS
   DNA_pol_A 180 geDiHsktAsevfgvpveevt........................keqRrqaKainfGiiYGagakgLaeqlgiseeeAkefiekyferypgvksylee 254
                 g   Hs+tA  +f     +v+                         ++Rr+aK++nf+i YG + +gL+++ g++  eA++++++ ++  p+v+++ ++
  KOO22196.1 549 GGCFHSRTAMGMFAHVRTAVDkgdcllewdwkqgkppapllkdvfGSERRRAKTLNFSIAYGKTVHGLSKDWGVTVGEARAMLDAWYADRPEVREWQQQ 647
                 ***************9999999*******************9999999*************************************************** PP

                 HHHHCCCECCEEETTCSEEEECTTT-CCHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-SEEEEEEETTEEEEEEECCCHHHHHHHHHHH CS
   DNA_pol_A 255 tleeakekgyvetllgrrrylpeiksknaalrekaeraavNapiQGsAaDiiklamikieealkeeklkarlllqvHDElvfevpeeeveevaelvkea 353
                 t+++a+e+g ++tl+gr r l+ i++ ++a+ ++ eraa+N+piQG AaDi+ lam+ki++    ++l  rlllq+HDE+++e p+e++ +++e v ++
  KOO22196.1 648 TIRRAHETGWTRTLMGRYRKLEGIQTGTRAVVAHHERAAINTPIQGGAADIMTLAMLKIKSSQILAELGYRLLLQIHDEVILEGPQEHALAAKEEVVRC 746
                 *************************************************************9999999******************************* PP

                 HHHHHH.....SSS--EEEEEEESSCCC CS
   DNA_pol_A 354 mesave.....ldvplkvevkvGknWge 376
                 m++ ++     l+v l v++k++knW+e
  KOO22196.1 747 MQHPFDdalpsLKVDLVVDAKTAKNWYE 774
                 *99888998889**************86 PP

>> DNA_pol_A_exo1  3'-5' exonuclease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.3   0.0     1e-12     9e-09      24     175 ..      18     200 ..       1     201 [. 0.75

  Alignments for each domain:
  == domain 1  score: 35.3 bits;  conditional E-value: 1e-12
                     EEEEEEE-SSSTTS...SEEEEEEEEECS.........SEEEEEECTTTTTT-HGHHHHHHHT-TTSEEEESSHHHHHHHHHHHHTS--SSEE.E CS
  DNA_pol_A_exo1  24 avDtEttsldlisa...tlvliliqlgek.........eeayiidplelgddvalealkrlledenitkvghnakfDlevlardfgielenlf.d 105
                     a DtE +++d  ++   +++++ +++  +          +a  +d+ +l+    lea++++le+e   kv hn+ fD++vl + +g++++++  d
      KOO22196.1  18 ACDTEVHNIDVKKSplgQGRVTCVSMYSGpevdygcgpGHALWVDTTDLEV---LEAMRPFLESERCLKVWHNYGFDRHVLWN-HGVDVRGFGgD 108
                     778888877775544334555555555556666665543444445555555...*****************************.*******9736 PP

                     HHHHHHHTTHSTT..SSHHHHHHHHHSB---GHCCTTSSTTT...................SSS-HH.HHHHHHHHHHHTHHHHHHHHHHHH CS
  DNA_pol_A_exo1 106 tmlaayvldyers..hsLdsLaekylgdleldkeeqiakwqk...................arplle.eqllYAaeDadvllrlfkkLtkel 175
                     tm +a++ d +r   +sL++L+++++g  +  ++e+ +  +                    ++pl++ ++++YA+ D   +  l+++L+++l
      KOO22196.1 109 TMHMARLWDASRLagYSLEVLTDELVGRRKAPMKELFGIPALkkdgqpgrkldmpsieelqNNPLTRpDWIQYACYDSQGTWLLHEELRRRL 200
                     6**********9999************55555555543222223556799999*******98888874688****************99876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (776 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       352  (0.019633); expected 358.6 (0.02)
Passed bias filter:                      320  (0.0178482); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.60u 0.28s 00:00:00.88 Elapsed: 00:00:00.43
# Mc/sec: 5395.40
//
Query:       KOO22197.1  [L=329]
Description: hypothetical protein Ctob_004966 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (329 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       505  (0.0281667); expected 358.6 (0.02)
Passed bias filter:                      413  (0.0230353); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.44u 0.25s 00:00:00.69 Elapsed: 00:00:00.39
# Mc/sec: 2512.79
//
Query:       KOO22198.1  [L=255]
Description: ankyrin repeat-containing [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    9.5e-25   87.0   0.0    4.4e-11   43.2   0.0    2.4  3  Ank_2     Ankyrin repeats (3 copies)
    2.1e-17   62.9   2.1    2.2e-11   43.8   0.0    3.7  4  Ank_5     Ankyrin repeats (many copies)
    2.7e-16   59.2   0.3    0.00022   21.6   0.1    3.4  3  Ank       Ankyrin repeat
    2.6e-15   56.6   0.0    2.7e-10   40.6   0.0    2.5  2  Ank_4     Ankyrin repeats (many copies)
    5.6e-14   50.9   0.2     0.0039   17.6   0.0    4.3  4  Ank_3     Ankyrin repeat
  ------ inclusion threshold ------
      0.025   14.4   0.1      0.046   13.6   0.1    1.4  1  DUF3263   Protein of unknown function (DUF3263)


Domain annotation for each model (and alignments):
>> Ank_2  Ankyrin repeats (3 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.2   0.0   1.5e-14   4.4e-11       3      82 ..      83     173 ..      81     174 .. 0.84
   2 !   38.1   0.0   5.9e-13   1.8e-09      26      74 ..     144     198 ..     141     207 .. 0.85
   3 !   16.0   0.0   4.6e-06     0.014      51      73 ..     175     197 ..     172     223 .. 0.66

  Alignments for each domain:
  == domain 1  score: 43.2 bits;  conditional E-value: 1.5e-14
       Ank_2   3 lAakngnlelvklLl..egadpn.k..ngktaLhyAakngnleivklLleh......adndgrtpLhyAarsghleivklLlekgadinlk 82 
                  Aa++g   ++ +Ll  +g  ++    +g taLh+ + +g++e+v+  l        +d+d  tpLh A+  g +ei+klLl+ ga i ++
  KOO22198.1  83 EAAEQGEATIMGHLLdmNGLGVDtPgeDGDTALHIGCLYGKIEVVQECLRRgavvtaLDEDRSTPLHDACAGGFYEIAKLLLDAGAPIFVR 173
                 589998778999999887766665246******************999986677777779999*******9999********999987666 PP

  == domain 2  score: 38.1 bits;  conditional E-value: 5.9e-13
       Ank_2  26 gktaLhyAakngnleivklLleh......adndgrtpLhyAarsghleivklLle 74 
                   t+Lh A+ +g  ei+klLl++       d+dg tpLh+Aar gh  +++lL+ 
  KOO22198.1 144 RSTPLHDACAGGFYEIAKLLLDAgapifvRDSDGDTPLHLAARGGHGHVAELLML 198
                 47*******************97778887779**************999999983 PP

  == domain 3  score: 16.0 bits;  conditional E-value: 4.6e-06
       Ank_2  51 ndgrtpLhyAarsghleivklLl 73 
                 +dg tpLh+Aar gh  +++lL+
  KOO22198.1 175 SDGDTPLHLAARGGHGHVAELLM 197
                 56666666666666666666665 PP

>> Ank_5  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.5   0.0    0.0004       1.2      23      55 ..      84     117 ..      73     117 .. 0.90
   2 !   15.0   0.0   7.6e-06     0.023       7      48 ..     104     143 ..      96     144 .. 0.82
   3 !   43.8   0.0   7.2e-15   2.2e-11       4      56 .]     133     184 ..     131     184 .. 0.94
   4 !   12.0   0.1   6.8e-05       0.2      18      37 ..     179     204 ..     176     223 .. 0.70

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 0.0004
       Ank_5  23 AakygaadvvrlLl.argadlnltdsrGltaldl 55 
                 Aa++g a+++  Ll ++g+  ++  ++G+tal++
  KOO22198.1  84 AAEQGEATIMGHLLdMNGLGVDTPGEDGDTALHI 117
                 999*****************************87 PP

  == domain 2  score: 15.0 bits;  conditional E-value: 7.6e-06
       Ank_5   7 advnrldgggntpLhvAakygaadvvrlLlargadlnltdsr 48 
                 +d+  +dg+  t+Lh+ + yg  +vv+++l rga  ++ d++
  KOO22198.1 104 VDTPGEDGD--TALHIGCLYGKIEVVQECLRRGAVVTALDED 143
                 555555666..**********************999998876 PP

  == domain 3  score: 43.8 bits;  conditional E-value: 7.2e-15
       Ank_5   4 hgpadvnrldgggntpLhvAakygaadvvrlLlargadlnltdsrGltaldlA 56 
                 +g a v +ld+++ tpLh A+ +g  ++++lLl+ ga ++++ds+G+t+l+lA
  KOO22198.1 133 RG-AVVTALDEDRSTPLHDACAGGFYEIAKLLLDAGAPIFVRDSDGDTPLHLA 184
                 56.888999******************************************98 PP

  == domain 4  score: 12.0 bits;  conditional E-value: 6.8e-05
       Ank_5  18 tpLhvAakygaadvvrlLl......a 37 
                 tpLh+Aa++g+  v++lL+       
  KOO22198.1 179 TPLHLAARGGHGHVAELLMlrageaT 204
                 *****************997544444 PP

>> Ank  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.6   0.0   1.3e-06    0.0038       1      31 [.     110     141 ..     110     142 .. 0.93
   2 !   16.4   0.0   3.1e-06    0.0092       4      31 ..     146     174 ..     143     175 .. 0.81
   3 !   21.6   0.1   7.2e-08   0.00022       1      24 [.     176     201 ..     176     207 .. 0.81

  Alignments for each domain:
  == domain 1  score: 17.6 bits;  conditional E-value: 1.3e-06
                 TSBBHHHHHHHHTTHHHHHHHH.TTTSTTCBT CS
         Ank   1 dGnTPLHlAatngkkriiklLL.hGAnlnald 31 
                 dG+T+LH+ + +gk +++++ L +GA ++ald
  KOO22198.1 110 DGDTALHIGCLYGKIEVVQECLrRGAVVTALD 141
                 8*******************998899889988 PP

  == domain 2  score: 16.4 bits;  conditional E-value: 3.1e-06
                 BHHHHHHHHTTHHHHHHHH.TTTSTTCBT CS
         Ank   4 TPLHlAatngkkriiklLL.hGAnlnald 31 
                 TPLH A+ +g  +i+klLL  GA +  +d
  KOO22198.1 146 TPLHDACAGGFYEIAKLLLdAGAPIFVRD 174
                 *******666699******6699776666 PP

  == domain 3  score: 21.6 bits;  conditional E-value: 7.2e-08
                 TSBBHHHHHHHHTTHHHHHHHH..TT CS
         Ank   1 dGnTPLHlAatngkkriiklLL..hG 24 
                 dG+TPLHlAa++g+ ++++lL    G
  KOO22198.1 176 DGDTPLHLAARGGHGHVAELLMlrAG 201
                 8*********9999999998854335 PP

>> Ank_4  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.5   0.0   2.7e-05      0.08      32      52 ..     108     128 ..      93     129 .. 0.84
   2 !   40.6   0.0   9.1e-14   2.7e-10       2      54 ..     145     196 ..     144     197 .. 0.97

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 2.7e-05
       Ank_4  32 nrsGetalhiAakrgnveilk 52 
                  ++G+talhi+++ g++e+++
  KOO22198.1 108 GEDGDTALHIGCLYGKIEVVQ 128
                 589***************997 PP

  == domain 2  score: 40.6 bits;  conditional E-value: 9.1e-14
       Ank_4   2 ltaLhyaaisgrlelvrlLlekgadinaqdnrsGetalhiAakrgnveilklL 54 
                 +t+Lh a++ g +e+++lLl+ ga i  + +++G+t+lh Aa++g+ ++++lL
  KOO22198.1 145 STPLHDACAGGFYEIAKLLLDAGAPIFVR-DSDGDTPLHLAARGGHGHVAELL 196
                 79***************************.********************998 PP

>> Ank_3  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.1   0.0      0.14   4.1e+02       4      23 ..      79      98 ..      77     106 .. 0.82
   2 !   17.6   0.0   1.3e-06    0.0039       1      27 [.     110     135 ..     110     139 .. 0.93
   3 !   12.1   0.0   7.7e-05      0.23       3      29 ..     145     170 ..     143     171 .. 0.91
   4 !   13.8   0.0   2.2e-05     0.066       1      22 [.     176     197 ..     176     203 .. 0.84

  Alignments for each domain:
  == domain 1  score: 2.1 bits;  conditional E-value: 0.14
       Ank_3  4 tpLhlAarsgnleivkfLle 23
                +p+ +Aa++g  +i+  Ll+
  KOO22198.1 79 YPILEAAEQGEATIMGHLLD 98
                7999*********9999998 PP

  == domain 2  score: 17.6 bits;  conditional E-value: 1.3e-06
       Ank_3   1 nGetpLhlAarsgnleivkfLlenkga 27 
                 +G t+Lh+ +++g++e+v+ +l+ +ga
  KOO22198.1 110 DGDTALHIGCLYGKIEVVQECLR-RGA 135
                 699********************.887 PP

  == domain 3  score: 12.1 bits;  conditional E-value: 7.7e-05
       Ank_3   3 etpLhlAarsgnleivkfLlenkgadv 29 
                  tpLh A+  g +ei+k+Ll+  ga++
  KOO22198.1 145 STPLHDACAGGFYEIAKLLLD-AGAPI 170
                 59*******************.89876 PP

  == domain 4  score: 13.8 bits;  conditional E-value: 2.2e-05
       Ank_3   1 nGetpLhlAarsgnleivkfLl 22 
                 +G tpLhlAar g+  ++++L 
  KOO22198.1 176 DGDTPLHLAARGGHGHVAELLM 197
                 699************9777665 PP

>> DUF3263  Protein of unknown function (DUF3263)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.1   1.5e-05     0.046      43      68 ..     213     238 ..     202     243 .. 0.85

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 1.5e-05
     DUF3263  43 naLiddpeAlaadPvlvkRLrrlRaa 68 
                 n+L ++p  la+dP+lv RLr l aa
  KOO22198.1 213 NELGERPVDLAEDPTLVARLRNLAAA 238
                 8999*****************98665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (255 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       561  (0.0312901); expected 358.6 (0.02)
Passed bias filter:                      376  (0.0209716); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.45u 0.26s 00:00:00.71 Elapsed: 00:00:00.41
# Mc/sec: 1863.01
//
Query:       KOO22199.1  [L=431]
Description: protein of hypothetical function duf81 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.1e-17   62.3  38.6    7.4e-17   61.8  31.7    2.7  3  TauE      Sulfite exporter TauE/SafE
  ------ inclusion threshold ------
       0.41   10.2   2.0        5.7    6.5   0.1    2.4  2  AOX       Alternative oxidase


Domain annotation for each model (and alignments):
>> TauE  Sulfite exporter TauE/SafE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.8   0.0       0.9     8e+03      66      88 ..      69      91 ..      63      99 .. 0.59
   2 !   61.8  31.7   8.3e-21   7.4e-17       3     233 ..     114     333 ..     112     336 .. 0.85
   3 ?   -3.0   0.2      0.51   4.6e+03      95     109 ..     352     366 ..     337     393 .. 0.48

  Alignments for each domain:
  == domain 1  score: -3.8 bits;  conditional E-value: 0.9
        TauE 66 llllllgsliGallGallllllp 88
                +++ l+ ++i ++ +a +l +l+
  KOO22199.1 69 VVRALAITVISTICAAQVLDSLS 91
                44445555666666665555554 PP

  == domain 2  score: 61.8 bits;  conditional E-value: 8.3e-21
        TauE   3 lagllaGfvagllGiGggliavPlLlll..lppavavatsllavvatslsgalahrrrgnvdwrlllllllgsliGallGallllllpse.llkllfgv 98 
                  ag++a++v+g+lG+G+g+ ++ +++ l  l+p +a  + +la++ t++ + l+h+  gnvd  ++ ++++++++Ga++Ga +l+ ++++  + +  g+
  KOO22199.1 114 CAGFIAQLVDGALGMGFGITSTTVMVSLagLSPLAASTSVHLAQLGTTALSGLSHYSYGNVDQTTVFRMAPAGMAGAFAGATFLATMSPRsTVPISAGL 212
                 69************************954789999**************************************************99988455555555 PP

        TauE  99 lllllallmllrkkrsrakgrerrptaillvligglvGllsGllGiGgGfllvpllllllglplkkavatslllilvislagalgyal.......agav 190
                 l  l++ +  l+++                     +++  ++  G+G+G++ +  ll   +l++ k+v+t +++ +++++a+++g++        +   
  KOO22199.1 213 LFGLVGNSSCLSAH---------------------GAASSDATGGGGWGPVATTGLLTDGHLTPAKVVGTVSAVEFLVTVAAVAGFVHqlgthfeTMGA 290
                 55555555544332.....................23456888899****9999999988*************************96656666664444 PP

        TauE 191 dwpllllllpgallGallGarlarrlsertlrrlfallllvlg 233
                  ++l+l+ll+g++l a+++  l++ l ++tl   ++++++++ 
  KOO22199.1 291 RVDLVLALLVGGMLAAPIAPLLVSSLEPETLGVSIGGFICLTN 333
                 4666688**************************9999999875 PP

  == domain 3  score: -3.0 bits;  conditional E-value: 0.51
        TauE  95 lfgvlllllallmll 109
                  +g++l+ l +l  l
  KOO22199.1 352 YVGIVLTWLLALHTL 366
                 334433222222222 PP

>> AOX  Alternative oxidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.8   0.2    0.0087        78      53      78 ..     133     158 ..     107     164 .. 0.88
   2 ?    6.5   0.1   0.00064       5.7      55      78 ..     265     288 ..     248     293 .. 0.86

  Alignments for each domain:
  == domain 1  score: 2.8 bits;  conditional E-value: 0.0087
         AOX  53 hRaifLetvAgvpgmvaavlrhLrsl 78 
                 +  +++++ Ag ++++a++  hL  l
  KOO22199.1 133 TSTTVMVSLAGLSPLAASTSVHLAQL 158
                 56799******************876 PP

  == domain 2  score: 6.5 bits;  conditional E-value: 0.00064
         AOX  55 aifLetvAgvpgmvaavlrhLrsl 78 
                 + fL+tvA+v+g+v  +  h++++
  KOO22199.1 265 VEFLVTVAAVAGFVHQLGTHFETM 288
                 569************999999977 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (431 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       435  (0.0242624); expected 358.6 (0.02)
Passed bias filter:                      215  (0.0119917); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.48u 0.25s 00:00:00.73 Elapsed: 00:00:00.41
# Mc/sec: 3170.12
//
Query:       KOO22200.1  [L=435]
Description: protein o-glucosyltransferase 1-like protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.4e-32  113.1   0.0    6.1e-32  111.0   0.0    1.7  1  Glyco_transf_90  Glycosyl transferase family 90
  ------ inclusion threshold ------
      0.011   16.1   0.0      0.039   14.3   0.0    1.8  2  Glyco_trans_1_2  Glycosyl transferases group 1


Domain annotation for each model (and alignments):
>> Glyco_transf_90  Glycosyl transferase family 90
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  111.0   0.0   6.8e-36   6.1e-32      40     340 ..       5     339 ..       2     370 .. 0.82

  Alignments for each domain:
  == domain 1  score: 111.0 bits;  conditional E-value: 6.8e-36
  Glyco_transf_90  40 rlviingrvyvekykksvqtrdvftiwgilqLlrky..pgklpDlelmfncdDrPvvkkkdyrgkea..................appPlfsyc 113
                      r+++ +g++y+  y +++  r  +  + +l Ll ++   ++l  l++++  +D P v++     +                    app lfs  
       KOO22200.1   5 RFQVHDGKLYITDYAAIFFDR-HYAPARVLPLLDTLrrHPQLRNLDIVVAGNDEPRVHNVPGDPRLWrrscqrycgdgsstsdgrAPPALFSST 97 
                      789******************.9999999999854421589***************987433211101122335566677788878888***** PP

  Glyco_transf_90 114 gdeetlDivfPdwsfw...gwpevnikrwslllkelkegnkkvkweerepyaywkGnpsvaetReeLlkcnrskkelvda.rltkq........ 195
                      ++++tlD+ + d+ +       +++  +ws+l  +l ++ + v+w  +   a + Gn  +a+ R+ L  +++ +++ + + +l++         
       KOO22200.1  98 TNRATLDLPWLDFAWFfpkRPHKLRTPPWSVLHPQLLAAGRSVPWATKVELAMHTGNVGSAQ-RKLLAAVAQGSPDTMLVnELFIGdhntirkr 190
                      ********99997755422333456679**********************************.999999998887765541555558999**** PP

  Glyco_transf_90 196 ......dekkeskegvkessledqckhkYkiyieGvaasvsekyilacdslvllvkp..eyydffsreLkplehYvPikskdklrdlkeavdwg 281
                            +++  ++++   + +edqc +kY ++     ++ ++k +l+c+s+vl+v++  ++++f+ ++L + +hYv +++    +d+   v+w+
       KOO22200.1 191 cvelglHRTGGYQKHRCFMTFEDQCSYKYLLNSASIGYANKFKSLLLCGSVVLYVRDgmRHQEFYEHGLLAGVHYVAVDR---ASDVPAMVRWL 281
                      *98876444445555556899**********************************975589*****************99...999******** PP

  Glyco_transf_90 282 nahdekaqeiaeegseFireeLkmddvydYmfhLlteYakllkykptvpkgavevcaes 340
                      +++de a+++a++g+  +  +L    + d+m++Ll++Y+k l + ++ ++gav+++ e 
       KOO22200.1 282 QKNDEYARAVAHAGRARM-ASLDARGLSDFMLELLSQYSKRLMFPVRPQPGAVHIECED 339
                      ***************997.89*********************************98773 PP

>> Glyco_trans_1_2  Glycosyl transferases group 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.0      0.52   4.6e+03      21      66 ..       3      46 ..       1      48 [. 0.68
   2 ?   14.3   0.0   4.4e-06     0.039      17      77 ..     234     299 ..     219     309 .. 0.85

  Alignments for each domain:
  == domain 1  score: -1.9 bits;  conditional E-value: 0.52
  Glyco_trans_1_2 21 cGafaltddaegleelftpgkevilfe...dleelaekiryllanpeer 66
                     c +f++ d     ++l+ ++  +i+f+    ++ ++  ++ l ++p++r
       KOO22200.1  3 CQRFQVHD-----GKLYITDYAAIFFDrhyAPARVLPLLDTLRRHPQLR 46
                     56666666.....566666667777777777777777888888888877 PP

  == domain 2  score: 14.3 bits;  conditional E-value: 4.4e-06
  Glyco_trans_1_2  17 EaaacGafaltdda.egleelftpgk....evilfedleelaekiryllanpeerraiaeaarerv 77 
                        + cG+++l+ +    ++e+++ g     + + ++   ++ + +r l +n+e +ra+a+a+r+r+
       KOO22200.1 234 SLLLCGSVVLYVRDgMRHQEFYEHGLlagvHYVAVDRASDVPAMVRWLQKNDEYARAVAHAGRARM 299
                      5688*******9889888888888777766999999****************************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (435 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       271  (0.0151152); expected 358.6 (0.02)
Passed bias filter:                      240  (0.0133861); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.48u 0.27s 00:00:00.75 Elapsed: 00:00:00.43
# Mc/sec: 3066.29
//
Query:       KOO22201.1  [L=171]
Description: 30s ribosomal protein s7 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    6.4e-27   94.0   0.0    8.1e-27   93.7   0.0    1.1  1  Ribosomal_S7  Ribosomal protein S7p/S5e


Domain annotation for each model (and alignments):
>> Ribosomal_S7  Ribosomal protein S7p/S5e
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   93.7   0.0   4.5e-31   8.1e-27      33     149 .]       2     113 ..       1     113 [. 0.97

  Alignments for each domain:
  == domain 1  score: 93.7 bits;  conditional E-value: 4.5e-31
                   TTBHHHHHHHHHHHHHHHHHHHSS-HHHHHHHHHHHCS-SEEEEEEBSSSSBEEEEEEE-HHHHHHHHHHHHHHHHSTSSSS-HHHHHHHHHHHHHT CS
  Ribosomal_S7  33 dGkkslAekivygaldiieektkkdplevleeAlenvkPrvevksrrvGGatyqvpvevrpkRrqalAlrwiieaarkrkeksmaekLaeElidAae 129
                   +Gkk++A+k++ +a+  +++  ++dp +v+  Alenv+P +e+++++ G    +vp +++p+R++ +A++wi +aarkr+++s+   La+El++A +
    KOO22201.1   2 SGKKEVARKLLWRAFVRLRDG-GHDPQDVFYGALENVRPMMEMRTFKSG----PVPFPLNPRRAEGQAMKWIRDAARKRTGQSLDVGLAAELLAAHQ 93 
                   7***************99998.79***********************98....8******************************************* PP

                   T-SHHHHHHHHHHHHHHHTG CS
  Ribosomal_S7 130 gegaavkkreethrmAeanr 149
                    +g+a++k+e++h+ A an+
    KOO22201.1  94 YKGSAIQKQEDVHKAAVANQ 113
                   ******************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (171 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       268  (0.0149478); expected 358.6 (0.02)
Passed bias filter:                      186  (0.0103743); expected 358.6 (0.02)
Passed Vit filter:                        12  (0.000669307); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.24s 00:00:00.62 Elapsed: 00:00:00.40
# Mc/sec: 1276.53
//
Query:       KOO22202.1  [L=783]
Description: hypothetical protein Ctob_004962 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    0.00029   21.3   0.0     0.0078   16.7   0.0    2.5  2  DUF4231        Protein of unknown function (DUF4231)
     0.0074   16.2   0.1      0.015   15.2   0.1    1.5  1  SLATT_1        SMODS and SLOG-associating 2TM effector domain


Domain annotation for each model (and alignments):
>> DUF4231  Protein of unknown function (DUF4231)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.0   8.7e-07    0.0078      12     100 ..     357     494 ..     350     498 .. 0.88
   2 ?    1.4   0.0     0.049   4.4e+02       9      36 ..     691     718 ..     684     757 .. 0.72

  Alignments for each domain:
  == domain 1  score: 16.7 bits;  conditional E-value: 8.7e-07
     DUF4231  12 rakrrfrllrlitivlgallpilvs.................................................sklgagvsvlkiltallsalvaila 61 
                 +  +++  l+l+ +vl++ + +++                                                  + +    +++k+l+ ++ alv+++ 
  KOO22202.1 357 KQAKLAQNLQLCVLVLSFGTGAISQlrtsiewffpflgeelarqmadeqlqipagggegeiagvpalpdascdaMPDSGLCQLTKYLSIIVPALVTVIL 455
                 4444555588999999999999988899999999999999999999999999999999999999999999999977788899***************** PP

     DUF4231  62 aleeffrykerWrryRstaEsLktekwlflakagpYsdn 100
                  +++   +  + +  +s a  ++++ ++f +++gpY ++
  KOO22202.1 456 TVQSYLDPDSQCIVLKSGAARIESQIYMFRTRTGPYGKA 494
                 ************************************875 PP

  == domain 2  score: 1.4 bits;  conditional E-value: 0.049
     DUF4231   9 kasrakrrfrllrlitivlgallpilvs 36 
                  + + k  f++l++ ++ +++ll +l  
  KOO22202.1 691 EQAKQKSAFKMLSIGLAAGSTLLGALGI 718
                 6778899999999999999999999988 PP

>> SLATT_1  SMODS and SLOG-associating 2TM effector domain 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.1   1.7e-06     0.015       3     104 ..     675     771 ..     673     776 .. 0.79

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 1.7e-06
     SLATT_1   3 reRveeqldwYrkkaeeneraakrwrlllillellalllaalrafgelsvdlvgvlaavaaallaWlelkqyeelaaaYslaaeeLeiiraaleaeate 101
                 + R+  +l   ++ + e++++++++++l i l + ++ll al+    ++v +v +++ +a+al+ W  +kq++   +  + a  +Le +  ++++  ++
  KOO22202.1 675 KFRMLPKLIAMSRLSPEQAKQKSAFKMLSIGLAAGSTLLGALG----INV-PVPLVVQFASALAGWESYKQMNMSLKLTNSAVGKLERLVLWWQSLSSD 768
                 5555555555556666777777777888887777777777777....777.99*****************************************96665 PP

     SLATT_1 102 eew 104
                 +e 
  KOO22202.1 769 REA 771
                 554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (783 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       405  (0.0225891); expected 358.6 (0.02)
Passed bias filter:                      374  (0.0208601); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.60u 0.27s 00:00:00.87 Elapsed: 00:00:00.43
# Mc/sec: 5411.90
//
Query:       KOO22203.1  [L=212]
Description: cytochrome b6 f complex iron-sulfur chloroplast precursor [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
      3e-14   52.7   0.1    4.6e-14   52.1   0.1    1.3  1  Rieske        Rieske [2Fe-2S] domain
    1.3e-12   47.5   0.6    1.3e-12   47.5   0.6    2.1  3  CytB6-F_Fe-S  Cytochrome B6-F complex Fe-S subunit


Domain annotation for each model (and alignments):
>> Rieske  Rieske [2Fe-2S] domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.1   0.1   5.2e-18   4.6e-14      11      85 ..     107     180 ..      97     185 .. 0.80

  Alignments for each domain:
  == domain 1  score: 52.1 bits;  conditional E-value: 5.2e-18
                 C-TTCEEEEEETTEEEEEEE-TTS-E..EEEESC-TTTT-BCGGSEEETT.EEE-TTT--EEETTSBEEE-TTHHHE CS
      Rieske  11 vpegdpltvkvggeplvvlrdedgev..yAlsdvCtHrgaplsegkidekgvleCpcHgwaydadGkvikgPaprpl 85 
                 +pe++ ++   g+  ++++++ dg++  +Al+ vCtH+g+ +  ++  ++ ++ CpcHg++yd++Gkvi gPap +l
  KOO22203.1 107 FPERSLVQGLKGDAHYLIVKQ-DGSLenFALNAVCTHLGCVVPWNRA-QN-KYMCPCHGSQYDPTGKVIRGPAPLSL 180
                 555555555567788999996.7776337************988888.45.7********************99665 PP

>> CytB6-F_Fe-S  Cytochrome B6-F complex Fe-S subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.3      0.71   6.4e+03      19      27 ..       6      14 ..       4      20 .. 0.56
   2 !   47.5   0.6   1.4e-16   1.3e-12       3      39 .]      42      78 ..      40      78 .. 0.98
   3 ?   -3.1   0.3      0.93   8.3e+03      17      27 ..      81      91 ..      81      93 .. 0.75

  Alignments for each domain:
  == domain 1  score: -2.7 bits;  conditional E-value: 0.71
  CytB6-F_Fe-S 19 aialtaaaa 27
                  ++al+a+a 
    KOO22203.1  6 IAALVASAN 14
                  456666654 PP

  == domain 2  score: 47.5 bits;  conditional E-value: 1.4e-16
  CytB6-F_Fe-S  3 VPDmsrRqllNlllvGaialtaaaaLyPvvkFFiPPs 39
                  VPDm+rR ++Nl+l+G+++++ + ++ + v+FFiPPs
    KOO22203.1 42 VPDMQRRTIMNLVLLGGAGVPVLWLAGGFVYFFIPPS 78
                  9***********************************8 PP

  == domain 3  score: -3.1 bits;  conditional E-value: 0.93
  CytB6-F_Fe-S 17 vGaialtaaaa 27
                  +G+++lta  a
    KOO22203.1 81 GGGGGLTAKDA 91
                  68999999655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (212 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       473  (0.0263818); expected 358.6 (0.02)
Passed bias filter:                      390  (0.0217525); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.42u 0.26s 00:00:00.68 Elapsed: 00:00:00.42
# Mc/sec: 1499.25
//
Query:       KOO22204.1  [L=208]
Description: hypothetical protein Ctob_002310, partial [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.12   12.5   0.0       0.22   11.7   0.0    1.4  1  Mcp5_PH   Meiotic cell cortex C-terminal pleckstrin homology


Domain annotation for each model (and alignments):
>> Mcp5_PH  Meiotic cell cortex C-terminal pleckstrin homology
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   1.2e-05      0.22      66     120 ..     144     199 ..     123     201 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 1.2e-05
     Mcp5_PH  66 aiesvlsvedenplpkglk.efnksililtpdralkltaetrerhevWltaLsyll 120
                  + +  +++d+++l   ++ +f+  + +   ++++k+ a++re ++ W ++L ++l
  KOO22204.1 144 DVYKAVDLADRCELLILSNdRFEFALSLRGGAKEIKFRAQSRESFDRWTSGLARYL 199
                 555666778888887776669999999************************98765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (208 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       620  (0.0345808); expected 358.6 (0.02)
Passed bias filter:                      382  (0.0213063); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.22s 00:00:00.63 Elapsed: 00:00:00.38
# Mc/sec: 1640.31
//
Query:       KOO22205.1  [L=348]
Description: phosphoglycerate dehydrogenase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.5e-37  127.5   0.0      5e-37  127.0   0.0    1.2  1  2-Hacid_dh_C   D-isomer specific 2-hydroxyacid dehydrogenase,
    0.00057   20.4   0.7     0.0028   18.2   0.3    2.5  2  F420_oxidored  NADP oxidoreductase coenzyme F420-dependent
  ------ inclusion threshold ------
      0.092   12.4   0.0       0.12   12.1   0.0    1.2  1  2-Hacid_dh     D-isomer specific 2-hydroxyacid dehydrogenase,
       0.13   11.4   0.0       0.19   10.8   0.0    1.3  1  SepQ           SepQ protein


Domain annotation for each model (and alignments):
>> 2-Hacid_dh_C  D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  127.0   0.0   1.1e-40     5e-37       2     176 ..     111     309 ..     110     311 .. 0.88

  Alignments for each domain:
  == domain 1  score: 127.0 bits;  conditional E-value: 1.1e-40
                   HHHHHHHTTHHHHHHHHHTTCC........HTTCCGSBS-GTTSEEEEES-SHHHHHHHHHHHHTT-EEEEESSSHHHHHCHHHHTCEECSH.HHHH CS
  2-Hacid_dh_C   2 alllallrrlaeadeevregew........ksekallgkelsgktvGiiGlGrIGqavakrlkafgmkviaydrskkkeeeeeelgvelvsl.eell 89 
                   a +l+ + +l+++d+++r+ +w         s ++++  +ls++++Gi+G+G+IG+a+a r++afgm++ a+  ++ ++  +    +  +s+  +l+
    KOO22205.1 111 AGMLQWVVKLPQMDAALRSCTWkegppganCSAAKMMHGQLSDMKLGILGYGNIGEAIAVRAAAFGMRIGATTLNPPQQPPAPLAWIGDDSMnPKLF 207
                   669999****************99988887777799999*******************************9999988777333333444555169** PP

                   HH-SEEEE-S--STTTTTSBSHHHHHCSTTTEEEEESS-GGGB-HHHHHHHHHTTSCCEEEES--SSS...............SSGTCHHHHHSTTE CS
  2-Hacid_dh_C  90 aesDivslhlpltpetrhlinaeelakmkkgailiNtaRGglvdeeaLleaLksgkiagaalDvfeee...............plpedspllelpnv 171
                   +esD+v++++pl p t++l++a+ la+m k a+l+N+aRG++v+e+ L++ L sg i+ga lDv+++                  p++ ++  lpnv
    KOO22205.1 208 SESDFVIVCTPLLPTTQGLVDATLLAQMSKRAVLVNIARGPVVQEKPLYDSLASGAIGGALLDVWWNTatgsdigppegygpsAWPSQYRFDLLPNV 304
                   ********************************************************************999999988888866333445677799** PP

                   EE-SS CS
  2-Hacid_dh_C 172 iltPH 176
                   i++ H
    KOO22205.1 305 IMSAH 309
                   *9999 PP

>> F420_oxidored  NADP oxidoreductase coenzyme F420-dependent
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.0         2   9.1e+03      44      44 ..      35      35 ..      15      65 .. 0.51
   2 !   18.2   0.3   6.2e-07    0.0028       1      94 [.     155     244 ..     155     247 .. 0.67

  Alignments for each domain:
  == domain 1  score: -2.7 bits;  conditional E-value: 2
                   H CS
  F420_oxidored 44 e 44
                   +
     KOO22205.1 35 Q 35
                   2 PP

  == domain 2  score: 18.2 bits;  conditional E-value: 6.2e-07
                    EEEEETTSHHHHHHHHHHHHTTS-GGCEEEEEESSCCCHHHHHHHHC-EEECECHHHHHHH-SEEEE-S-HHHHHH.HHHHC.GHHHHTTSEEEEE CS
  F420_oxidored   1 kigiiGaGnmgealasgllaagaqpheivvansrnpekaeelaeelgvkvtavdneeaaeeadvvvlavkpedvee.vlsel.akdalkgklvisv 94 
                    k+gi+G+Gn+gea+a +++a g     i  a++ np +   +   + ++  +  n ++ +e+d+v+++ +   +++ ++++   ++ +k+ +++ +
     KOO22205.1 155 KLGILGYGNIGEAIAVRAAAFG---MRIG-ATTLNPPQQPPAP-LAWIGDDS-MNPKLFSESDFVIVCTPLLPTTQgLVDATlLAQMSKRAVLVNI 244
                    79********************...8888.5566665443333.22233344.6788889999999999975444313333346666777777666 PP

>> 2-Hacid_dh  D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   2.6e-05      0.12     102     133 ..      90     342 ..       9     343 .. 0.88

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 2.6e-05
                 H.................................................................................................. CS
                 x.................................................................................................. RF
  2-Hacid_dh 102 t.................................................................................................. 102
                                                                                                                    
  KOO22205.1  90 Paqftvanchqssiaiaeyvlagmlqwvvklpqmdaalrsctwkegppgancsaakmmhgqlsdmklgilgygnigeaiavraaafgmrigattlnppq 188
                 05555555555555555555******************************************************************************* PP

                 ................................................................................................... CS
                 ................................................................................................... RF
  2-Hacid_dh 103 ................................................................................................... 102
                                                                                                                    
  KOO22205.1 189 qppaplawigddsmnpklfsesdfvivctpllpttqglvdatllaqmskravlvniargpvvqekplydslasgaiggalldvwwntatgsdigppegy 287
                 *************************************************************************************************** PP

                 ........................T-BHHHHHHHHHHHHHHHHHHHTTCCGTTBC CS
                 ........................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  2-Hacid_dh 103 ........................aaTeeaqeniaeeaaenlvaflkgespanav 133
                                         ++T e+q+++ +++  nl   +++e+++++v
  KOO22205.1 288 gpsawpsqyrfdllpnvimsahdsGFTPESQQEALRQVSANLDHLARQEPLEHVV 342
                 **************************************************99998 PP

>> SepQ  SepQ protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   4.3e-05      0.19     142     197 ..      26      81 ..      17     127 .. 0.84

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 4.3e-05
        SepQ 142 tvqslqylinenwqlvphsntlffdgyiapgwtdypvtklsvgdslrlyhvddske 197
                 tv  +q l++  w+l+p +n+   d   a  + + pv++ls   s +ly+ d +  
  KOO22205.1  26 TVADIQALLQTTWRLLPVANASASDVAEAVAFVQTPVAQLSGATSGQLYQYDYTGY 81 
                 8999*********************************************9997655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (348 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       309  (0.0172346); expected 358.6 (0.02)
Passed bias filter:                      274  (0.0152825); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.44u 0.26s 00:00:00.70 Elapsed: 00:00:00.39
# Mc/sec: 2645.63
//
Query:       KOO22206.1  [L=415]
Description: ethanolamine-phosphate phospho-lyase isoform 1 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.9e-81  273.8   0.0    2.3e-81  273.5   0.0    1.0  1  Aminotran_3      Aminotransferase class-III
      3e-06   26.7   0.0    4.8e-06   26.1   0.0    1.3  1  Beta_elim_lyase  Beta-eliminating lyase


Domain annotation for each model (and alignments):
>> Aminotran_3  Aminotransferase class-III
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  273.5   0.0   2.6e-85   2.3e-81      11     406 .]      11     403 ..       3     403 .. 0.91

  Alignments for each domain:
  == domain 1  score: 273.5 bits;  conditional E-value: 2.6e-85
                  EEEEEEEBTEEEETTS-EEEESSHHHHTTTT-BT-HHHHHHHHHHHTT-S---TTTCEEHHHHHHHHHHHHHCT-..SEEEEESSHHHHHHHHHHHHH CS
  Aminotran_3  11 lvitkaeGvyltdvdgkrylDlvssiavvnlGhahPkvvkavkeqaaklshvsfgaltnepalklaekllklapkgldkvflansGseAvetAlKlar 108
                  + +  a+G y+ d dg+rylD v    v  +Gh+hP+vv+a+++q+a +       + ++++++la+ l++ +p+ l+  +++nsGseA+  Al+lar
   KOO22206.1  11 IKVASAQGQYIFDSDGNRYLDCVNN--VCHVGHCHPRVVQAAAQQLAMINTN--SRYMHDNVVRLAQRLADSMPGPLEVCIFVNSGSEANDLALRLAR 104
                  78899****************9985..889***************9988554..5899**************************************** PP

                  HHHHHTSHCTT-EEEEETTT---SSHHHHHHSS--TTTTTTCTTB-TSEEEE-TTBGGGTB-HH.HHHHHHHHHHHHHHCHTCCCEEEEEE-SCETTT CS
  Aminotran_3 109 kyarekkatektkiiafkgafHGrtlgalsvtgskkkyktlfgpflpevvrlkypdeevlkene.eeeaalleelealekkkkdevaAvivEpiqgeg 205
                  +         +  +  +++a+HG+t ++l+++   +  k +  +++ ++v+l +pd ++l + + + ++ +  e+e l    +   aA+ivE     g
   KOO22206.1 105 N-------YGQRDVYCVDQAYHGHTAATLAISPY-S--KYGPVDLPSDTVKLMLPDHYRLGVSAeRMTELCVAEFEWLLSSRETPPAAFIVESLICCG 192
                  *.......34567999***************998.3..3344555889999999999999887735688999************************** PP

                  TSEB--CCHHHHHHHHHHHHT-EEEEE-TTTTTTTTSS.SSGGGGCTS--SEEEE-GGGGTTSS-EEEEEEHHHHTTS-TTSB--TTTT-HHHHHHHH CS
  Aminotran_3 206 GvvvaspeflaklrelckkhdvllivDEvqtGfGrTGk.lfAlehagvspDlmtlaKaltgGlplsavlataevmqalapgshgsTfgGnplacaval 302
                  G vv +p++l+++ +l ++h+ l i+DEvq+GfGr G+ +++ e  + +pD++tl+K  ++G+plsav++t++v++a ++ +  +TfgGnp+acav l
   KOO22206.1 193 GQVVLPPGYLRQMHALVRQHGGLAIADEVQVGFGRVGDhMWGFEAHDATPDIVTLGKPFGNGFPLSAVVTTRAVADASRDVEYFNTFGGNPVACAVGL 290
                  *************************************659********************************************************** PP

                  HHHHHHHHTTHHHHHHHHHHHHHHHHHHHCTT-TTEEEEEEETTEEEEEEBCCCETTC.........HHHHHHHHHCTEE-EEETTTEEEE---TT-- CS
  Aminotran_3 303 avleiieeekllenaqelgaalkegLeelqkkyevikevRgkGlmiaielkeeaevke.........keilkkakekGvlilsaGdnvirllppliit 391
                  +v+++i++e l ena+++g++ ++   +l++k+  i++vRg+Gl+++ e++ ++ ++e          + + + ++  v + + ++nvi++ ppl++t
   KOO22206.1 291 EVMQVIADEGLRENARDTGRYTRTLVANLAAKHASIGDVRGMGLLFGCEFVIDRSTREpnarladhcMQWMRAERQVLVSTDGPHRNVIKMKPPLCFT 388
                  **************************************************999887778****98776666776776666666677************ PP

                  HHHHHHHHHHHHHHH CS
  Aminotran_3 392 deeidelleilkkal 406
                   e+ + l  ++ +al
   KOO22206.1 389 PENGETLAAAIDDAL 403
                  **9999999998876 PP

>> Beta_elim_lyase  Beta-eliminating lyase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.1   0.0   5.4e-10   4.8e-06      17     161 ..      52     213 ..      43     220 .. 0.80

  Alignments for each domain:
  == domain 1  score: 26.1 bits;  conditional E-value: 5.4e-10
                      HHHCS----CCCT--HHHHHHHHHHHHHTT..-SEEEEES-HHHHHHHHHHHH-..-TTEEEEEETT-HHHHSSTTHHHHCC--EEEEE-EBTT CS
  Beta_elim_lyase  17 aqaaamlGdesYgedktvnrLedavaelfg..keaalfvpqGtaAnsillkill..qrgeevivtepahihfdetgaiaelagvklrdlknkea 106
                      +q a+      Y  d +v rL++++a+ +    e  +fv +G  An ++l++     + + ++v++  h+h+  t ai+ ++   ++dl+++  
       KOO22206.1  52 QQLAMINTNSRYMHD-NVVRLAQRLADSMPgpLEVCIFVNSGSEANDLALRLARnyGQRDVYCVDQAYHGHTAATLAISPYSKYGPVDLPSDTV 144
                      334444444456665.677899999998862357788*************776632344567788889************************99 PP

                      .................TBE-HHHHHHHS--S-TTS-EEEEEEEESSBTTTTTB--.-HHHHHHHHHHHHHCT CS
  Beta_elim_lyase 107 .................GkmdlekleaaikevgaheekiklisltvTnntagGqvv.sleelrevaaiakkyg 161
                                        ++ ++++e ++  +    e +++  +     ++gGqvv ++ +lr+++a+++++g
       KOO22206.1 145 klmlpdhyrlgvsaermTELCVAEFEWLLSSR----ETPPAAFIVESLICCGGQVVlPPGYLRQMHALVRQHG 213
                      9******************************4....456666666777789***864899***********98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (415 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       471  (0.0262703); expected 358.6 (0.02)
Passed bias filter:                      425  (0.0237046); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.49u 0.24s 00:00:00.73 Elapsed: 00:00:00.40
# Mc/sec: 3091.23
//
Query:       KOO22207.1  [L=380]
Description: methionine-r-sulfoxide reductase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.3e-42  143.4   0.2    4.9e-42  142.8   0.2    1.3  1  SelR             SelR domain
    2.3e-12   47.0   0.0    3.4e-12   46.4   0.0    1.2  1  Methyltransf_16  Lysine methyltransferase
     0.0091   15.6   0.1      0.018   14.6   0.1    1.4  1  MTS              Methyltransferase small domain
  ------ inclusion threshold ------
      0.011   15.5   0.0      0.018   14.8   0.0    1.2  1  Met_10           Met-10+ like-protein
      0.083   12.2   0.0       0.14   11.4   0.0    1.3  1  GidB             rRNA small subunit methyltransferase G


Domain annotation for each model (and alignments):
>> SelR  SelR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  142.8   0.2   1.4e-45   4.9e-42       1     120 [.       7     126 ..       7     127 .. 0.97

  Alignments for each domain:
  == domain 1  score: 142.8 bits;  conditional E-value: 1.4e-45
                 HHHCTSHCCHHHHHHHTT-SSTTSSSTSS--.SSCEEEETTTS-EEEECCCCE-STTSSSEESS-STTTTEEEEEEECTTSEEEEEEETTCECEEEEEE CS
        SelR   1 elkkkLtpeqyevlrekgterpftgeyekek.ekGvyecavcgepLfssetkfdsgcGwpsFaeaikeeavkekkdtslgmertevvcakcdahlGhvF 98 
                 +++++Ltp++y+vlrek+te++ +gey++ + ++G+++c++c++pLfs+ +k++sgcGwpsF +++ + +++ ++d s+g +r+e+vca+cd+hlGh+F
  KOO22207.1   7 DWRRTLTPDEYRVLREKATEPARSGEYNDLYpTEGYFVCRGCKNPLFSAAAKYKSGCGWPSFDRCYVG-SLRVQPDFSHGDQRVEIVCAQCDGHLGHLF 104
                 69***************************98689*********************************9.9***************************** PP

                 CTSSSSS.SEEEEE-CCCEEEE CS
        SelR  99 edgpkpttgkrycinsvslkfk 120
                 + ++++++++r+c+ns s+kf 
  KOO22207.1 105 SGEHHTESDQRHCVNSRSIKFI 126
                 *9999999*************7 PP

>> Methyltransf_16  Lysine methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.4   0.0   9.6e-16   3.4e-12      44     148 ..     256     363 ..     242     370 .. 0.85

  Alignments for each domain:
  == domain 1  score: 46.4 bits;  conditional E-value: 9.6e-16
  Methyltransf_16  44 elsklsvlELGsGtGlvGlavaellpeakviltDlee.llellkknielnkn...alkskvkvevLdWgeeleedllekeevDlilaaDcvYle 133
                       l++  v+ELG+G+Gl Gla+a  + + +v+ltDl+  +l +l+ n+ +n +   a   +v++++ +  ++ ++  +  e+vD++l +D+ Y  
       KOO22207.1 256 VLEGACVVELGAGCGLPGLAAAVYARSRRVVLTDLNAlTLANLRANVLANADacaAAGCSVETTPKTQVQPYQP-YIVGEPVDIVLGSDLAYRT 348
                      567888******************************98899********9886656677888888888888855.55799************** PP

  Methyltransf_16 134 dslelLvkvLkellk 148
                      + + lL + ++ ll+
       KOO22207.1 349 ENVRLLGARVRALLA 363
                      ****99888887776 PP

>> MTS  Methyltransferase small domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.6   0.1   5.1e-06     0.018      34      84 ..     261     311 ..     247     326 .. 0.84

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 5.1e-06
                 EEEEET-TTSHHHHHHHHHTTC.EEEEEESBHHHHHHHHHHHHHTTGCEEE CS
         MTS  34 kvlDlGcGaGvlgaalakespeaevtlvdvdarAlesakenleanklevev 84 
                  v+ lG+G G+ g+a+a    + +v+l+d +a  l+  ++n+ an+ ++ +
  KOO22207.1 261 CVVELGAGCGLPGLAAAVYARSRRVVLTDLNALTLANLRANVLANADACAA 311
                 599***************999999*******************99866544 PP

>> Met_10  Met-10+ like-protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.8   0.0     5e-06     0.018      96     147 ..     254     305 ..     244     314 .. 0.91

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 5e-06
                 TT--TT-EEEETT-TTTCCHHHCCHHTTSSEEEEEES-HHHHHHHHHHHHHT CS
      Met_10  96 klveegevVvdvfAGiGpfaipiakyskakrvlaidlnPesvkylkeniklN 147
                 + v eg  Vv++ AG G   +++a+y++ +rv+  dln  +   l+ n+  N
  KOO22207.1 254 RAVLEGACVVELGAGCGLPGLAAAVYARSRRVVLTDLNALTLANLRANVLAN 305
                 56789*****************************************999877 PP

>> GidB  rRNA small subunit methyltransferase G
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   3.9e-05      0.14      51      79 ..     260     289 ..     240     302 .. 0.81

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 3.9e-05
                 ..EEEETSTTTTTHHHHHHH-TTSEEEEEE CS
        GidB  51 k.viDvGsGaGlPGipLaiarpelkltLle 79 
                 + v+ +G+G GlPG+  a++  + +++L +
  KOO22207.1 260 AcVVELGAGCGLPGLAAAVYARSRRVVLTD 289
                 23999********************99987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (380 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       416  (0.0232026); expected 358.6 (0.02)
Passed bias filter:                      343  (0.019131); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.46u 0.23s 00:00:00.69 Elapsed: 00:00:00.39
# Mc/sec: 2938.02
//
Query:       KOO22208.1  [L=460]
Description: intraflagellar transport protein 52-like protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
      3e-05   23.6   0.0    4.1e-05   23.2   0.0    1.2  1  ABC_transp_aux  ABC-type uncharacterized transport system
    0.00049   19.0   0.0    0.00088   18.2   0.0    1.3  1  DDOST_48kD      Oligosaccharyltransferase 48 kDa subunit beta
  ------ inclusion threshold ------
      0.011   15.2   0.0      0.027   13.9   0.0    1.6  2  DUF4159         Domain of unknown function (DUF4159)


Domain annotation for each model (and alignments):
>> ABC_transp_aux  ABC-type uncharacterized transport system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.2   0.0   6.9e-09   4.1e-05     166     267 .]      28     120 ..       5     120 .. 0.77

  Alignments for each domain:
  == domain 1  score: 23.2 bits;  conditional E-value: 6.9e-09
  ABC_transp_aux 166 e.adfleeleenYnveevdldsedilpedidvlviakptkdlseeelykldqflmnGgkllvfldpvaeeqdslsepsaaprtsnLedllaeyGv 259
                       ++++++l++++++   + + +  +  + +v  i++p++++s  e ++ ++++++Gg++++ l    e++            +n + + +eyG+
      KOO22208.1  28 GlKGLRRKLGSQFTIAVNKDAITLAVLREASVFAIVGPREKFSAAEFEAMNEYMKEGGSIFITLGEEGESK----------FATNVNYFCEEYGI 112
                     445677788888877754333333345899********************************999887644..........489*********** PP

  ABC_transp_aux 260 rinpglVl 267
                      +n++ V+
      KOO22208.1 113 AFNQDAVV 120
                     ****9985 PP

>> DDOST_48kD  Oligosaccharyltransferase 48 kDa subunit beta
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.2   0.0   1.5e-07   0.00088      68     258 ..      75     268 ..      61     274 .. 0.74

  Alignments for each domain:
  == domain 1  score: 18.2 bits;  conditional E-value: 1.5e-07
  DDOST_48kD  68 kallefvnkggniLvalsssk...lpesirsllselgielsergskvvDhfnydsesda..........ekhdvlllsspeellakvknifs....ekk 149
                 +a+ e++++gg i+++l+++      ++++ + +e+gi ++++  + + +++y +   +           + +v    +p+++ a + +++     e++
  KOO22208.1  75 EAMNEYMKEGGSIFITLGEEGeskFATNVNYFCEEYGIAFNQDAVVRTVYYKYLH--PKevhiangvlnREINVASGRRPRAASAATGALVPpaisESS 171
                 678899**********99887778999*************966554444444432..221244556554333333333333222222222224544556 PP

  DDOST_48kD 150 keeevlf.rgvgallgnnplllpiLrapstsysydpkeeeesaeeafavGsqlslvaalQarnnaRvvfvGslellsdeffdakvkkkeksgnrefakd 247
                  ++++ f    g++l  ++ ++p+L++   ++  +          a+  G+++   a   a+ + R+ ++Gs+ +l+d+++d+       ++n ++++ 
  KOO22208.1 172 PQANLSFvYPYGCSLAVQKPAFPVLSSGPLAFPLNRPV-----C-ALWSGERARSGAVSGALGGGRLCVLGSSYVLQDDWVDK-------EENGKLVNV 257
                 66667778899999999999************999544.....3.345899999999999*********************66.......99******* PP

  DDOST_48kD 248 ltkWtfqekgv 258
                 l +W  ++ gv
  KOO22208.1 258 LLRWLTHDGGV 268
                 ****9988776 PP

>> DUF4159  Domain of unknown function (DUF4159)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.0   4.5e-06     0.027      18      86 ..      27      90 ..      21     109 .. 0.77
   2 ?   -3.3   0.0      0.84     5e+03      71      89 ..     256     277 ..     251     314 .. 0.70

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 4.5e-06
                THHHHHHHHHHHHSSS-B-SS-EEE-TT-TTGGG-SEEEEEESS------HHHHHHHHHHHTT-EEEEE CS
     DUF4159 18 aglrnLskflnertslevpeepagvdlsddeLfeyPllYltghgnvkfssaeakaLraYlrkGGfLliD 86
                +gl++L + l  + ++ v+++ +++ +     ++   +++ + +  kfs+ae +a+++Y+++GG ++i 
  KOO22208.1 27 QGLKGLRRKLGSQFTIAVNKDAITLAV-----LREASVFAIVGPREKFSAAEFEAMNEYMKEGGSIFIT 90
                567777777777777776666666664.....44457889999999********************995 PP

  == domain 2  score: -3.3 bits;  conditional E-value: 0.84
                 HHHHHHHHTT-EEEEEE-...S CS
     DUF4159  71 kaLraYlrkGGfLliDdr...g 89 
                 + L ++l++ G + +D     +
  KOO22208.1 256 NVLLRWLTHDGGVTMDSIdadD 277
                 5677888888888888753331 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (460 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       394  (0.0219756); expected 358.6 (0.02)
Passed bias filter:                      375  (0.0209158); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.47u 0.22s 00:00:00.69 Elapsed: 00:00:00.37
# Mc/sec: 3766.17
//
Query:       KOO22209.1  [L=242]
Description: hypothetical protein Ctob_002301 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    8.8e-09   35.9  11.2       0.58   11.2   0.1    5.8  5  SHIPPO-rpt  Sperm-tail PG-rich repeat


Domain annotation for each model (and alignments):
>> SHIPPO-rpt  Sperm-tail PG-rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.6   0.1    0.0019        33       4      16 ..      52      72 ..      52      82 .. 0.67
   2 !    7.7   0.0   0.00039         7       1      10 [.      95     104 ..      95     125 .. 0.83
   3 !   11.2   0.1   3.2e-05      0.58       2      16 ..     136     153 ..     135     167 .. 0.68
   4 !    4.5   0.0    0.0041        73       2      23 ..     177     208 ..     176     218 .. 0.74
   5 !   10.1   0.2   7.1e-05       1.3       1      11 [.     223     233 ..     223     242 .] 0.78

  Alignments for each domain:
  == domain 1  score: 5.6 bits;  conditional E-value: 0.0019
  SHIPPO-rpt  4 PGtYkpnk........nvpsn 16
                PG+Y+p +        ++++n
  KOO22209.1 52 PGAYDPYMnsdivatsSFTHN 72
                9*****995555555544444 PP

  == domain 2  score: 7.7 bits;  conditional E-value: 0.00039
  SHIPPO-rpt   1 lPGPGtYkpn 10 
                 +PGPG+Y   
  KOO22209.1  95 SPGPGAYQAA 104
                 6******765 PP

  == domain 3  score: 11.2 bits;  conditional E-value: 3.2e-05
  SHIPPO-rpt   2 PGPGtYkpnk...nvpsn 16 
                 PG GtY+pn+   +++++
  KOO22209.1 136 PGAGTYSPNMasvYANKR 153
                 9*********85433333 PP

  == domain 4  score: 4.5 bits;  conditional E-value: 0.0041
  SHIPPO-rpt   2 PGPGtYkpnk.........nvpsn.ksaPkys 23 
                  GPG+Y+  +          v+++ k +P++s
  KOO22209.1 177 VGPGSYEETSgtllldsqqAVLRSsKIKPAFS 208
                 6*****98888777777776666656677776 PP

  == domain 5  score: 10.1 bits;  conditional E-value: 7.1e-05
  SHIPPO-rpt   1 lPGPGtYkpnk 11 
                 +PGPG+Y+p  
  KOO22209.1 223 TPGPGSYEPLE 233
                 7*******966 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (242 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       269  (0.0150036); expected 358.6 (0.02)
Passed bias filter:                      224  (0.0124937); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.23s 00:00:00.59 Elapsed: 00:00:00.36
# Mc/sec: 2033.62
//
Query:       KOO22210.1  [L=317]
Description: guanylyl cyclase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    8.6e-49  165.8   0.0    1.1e-48  165.4   0.0    1.1  1  Guanylate_cyc_2  Guanylylate cyclase
    5.7e-08   33.4   0.1    4.7e-07   30.4   0.1    2.2  1  Peptidase_C39_2  Peptidase_C39 like family
    9.2e-05   22.5   0.3      0.047   13.7   0.3    3.1  1  Peptidase_C70    Papain-like cysteine protease AvrRpt2
    0.00019   21.2   0.0      0.061   13.1   0.0    2.3  2  Peptidase_C39    Peptidase C39 family
    0.00028   20.6   0.0    0.00033   20.3   0.0    1.2  1  DAO              FAD dependent oxidoreductase
  ------ inclusion threshold ------
       0.01   15.3   0.3        8.9    5.7   0.1    3.0  3  DUF3335          Peptidase_C39 like family


Domain annotation for each model (and alignments):
>> Guanylate_cyc_2  Guanylylate cyclase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  165.4   0.0   3.7e-52   1.1e-48       4     212 .]      83     287 ..      80     287 .. 0.91

  Alignments for each domain:
  == domain 1  score: 165.4 bits;  conditional E-value: 3.7e-52
  Guanylate_cyc_2   4 vqQkesWDCGlaCvlmvlkelkqkklflkefeeickelgltesiWtiDLayllkkfsvkhrfltktlgvnka.ykaesfykktldkdekRvnkl 96 
                       +Q+++WDCGlaC++m l +l+++ ++++ ++++      ++s+W iDLayll +++v+++flt   +++ + y+ + fy+++l++d++Rv++l
       KOO22210.1  83 KKQETTWDCGLACTQMALGALGHTPSNEDLIQRLA-----STSVWSIDLAYLLTEYGVECEFLTAKASMDAStYEGSAFYNDSLAADSRRVSRL 171
                      58******************999986544444444.....59***************************97538999***************** PP

  Guanylate_cyc_2  97 fkkakeagievekrsvsveelvehlasgk.vaivLvnaalLkcdlcksnkllse.lrkllsrkseytGhyvvlcGydakekkllyrnPassdkv 188
                      f++a  +g+ v +r++s  el +++  ++ ++i+Lv+ ++++ ++++   ++    ++  ++++ ++Ghyv+++G+d ++  +++++Pa +d+ 
       KOO22210.1 172 FSAAAVEGVVVLERTLSATELWNLMRAEEtIVIMLVDVTKIHRRVVSG--FADDgSSGSGGESEGFMGHYVLVTGLDDERGGFVVNDPARNDER 263
                      *************************99999************999986..333346778889999***************************** PP

  Guanylate_cyc_2 189 csisvealeeArksiGTDeDiili 212
                      +++++++le Ar s GTD+D+ili
       KOO22210.1 264 TFVHADSLEAARVSPGTDQDMILI 287
                      **********************98 PP

>> Peptidase_C39_2  Peptidase_C39 like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.4   0.1   1.6e-10   4.7e-07       7     144 .]      84     258 ..      78     258 .. 0.76

  Alignments for each domain:
  == domain 1  score: 30.4 bits;  conditional E-value: 1.6e-10
  Peptidase_C39_2   7 nQldelpng.Ceptslamvlsylgkkvtqnelakelktns.......................sgdpntgfvgnitdksglgvynepivklaek 76 
                      +Q    +++ C+ ++++m+l  lg++++ ++l + l+++s                        +   +++ g+  ++++l + +  ++ l ++
       KOO22210.1  84 KQ---ETTWdCGLACTQMALGALGHTPSNEDLIQRLASTSvwsidlayllteygvecefltakASMDASTYEGSAFYNDSLAADSRRVSRLFSA 174
                      55...67778*********************************************998887752222333334444666776666666665554 PP

  Peptidase_C39_2  77 yglkvsdtrgssi..eevkkeidagkPvvvsvtt.fkpl..............ndgeikftssgHlvvitGYdekgkrvyvnDPa 144
                         +  ++ ++++  +e+ + + a   +v+++ + ++++               +g  +    gH+v++tG d++   ++vnDPa
       KOO22210.1 175 AAVEGVVVLERTLsaTELWNLMRAEETIVIML-VdVTKIhrrvvsgfaddgssGSGGESEGFMGHYVLVTGLDDERGGFVVNDPA 258
                      44444444444444499999999999999888.445555999*******99884445577789***********8889******6 PP

>> Peptidase_C70  Papain-like cysteine protease AvrRpt2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.7   0.3   1.6e-05     0.047     102     134 ..     231     264 ..      75     273 .. 0.89

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 1.6e-05
  Peptidase_C70 102 spgdvvgHviVltGidedga.vivhDPesgakrk 134
                    + ++++gH  ++tG d +   ++v+DP+   +r+
     KOO22210.1 231 ESEGFMGHYVLVTGLDDERGgFVVNDPARNDERT 264
                    44568**********988777******9987765 PP

>> Peptidase_C39  Peptidase C39 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.1   0.0     2e-05     0.061       6      65 ..      84     141 ..      80     152 .. 0.80
   2 !    5.7   0.0     0.004        12      86     109 ..     236     261 ..     232     273 .. 0.77

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 2e-05
  Peptidase_C39   6 lqveeedcGlaalamilkyygsevsleeLrelagtdeeGlslsgLkkaakklglkakaik 65 
                    +q+   dcGla+ +m l+ +g++ s e+L + +      +   +L  + +++g++++ + 
     KOO22210.1  84 KQETTWDCGLACTQMALGALGHTPSNEDLIQRLA--STSVWSIDLAYLLTEYGVECEFLT 141
                    688899*****************99999988874..555566677777888888877555 PP

  == domain 2  score: 5.7 bits;  conditional E-value: 0.004
  Peptidase_C39  86 lkHfvvveki..kkkkvliadPakgk 109
                    ++H+v+v++   ++  ++++dPa++ 
     KOO22210.1 236 MGHYVLVTGLddERGGFVVNDPARND 261
                    58*******9656889******7654 PP

>> DAO  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.3   0.0   1.1e-07   0.00033      55     167 ..      39     199 ..       9     290 .. 0.72

  Alignments for each domain:
  == domain 1  score: 20.3 bits;  conditional E-value: 1.1e-07
                 H......HHHHHHHHHHHHH..HHHHHHHSSTTSEEEEEEEEEESSHHHHHHHH..................................HHHHHH.HHTT CS
         DAO  55 s......elarlslealeel..releeelgididyrrtGllslaadeeeleald..................................kllall.leag 110
                 +      ++a+l +++++ +  +e+e+e g  ++y  +  l++a + +++  +d                                  + la l +e+g
  KOO22210.1  39 ElrkiklRVAKLRKQGHDVWtdDEVEKE-GYTVGYGAPSGLHVAKK-KQETTWDcglactqmalgalghtpsnedliqrlastsvwsiD-LAYLlTEYG 134
                 0344444899***********9999988.**************964.457778888888888888888888888888888888777744.4443599** PP

                 TTEEEEEHHHHHHHSTTSTTTSEEEEETTEEEEEHHHHHHHHHHHHHHTT-EEEES.............E CS
         DAO 111 ldaelldaeevrelepalpgllgalfypdtgqvdpakltaalaraaealGveileg.............t 167
                 ++ e+l+a+  ++ +     + g+ fy d+  +d +++ + l +aa+  Gv +le+             +
  KOO22210.1 135 VECEFLTAKASMDAS----TYEGSAFYNDSLAADSRRVSR-LFSAAAVEGVVVLERtlsatelwnlmraE 199
                 ********6333333....689*******77767776665.55666667899999944443333333330 PP

>> DUF3335  Peptidase_C39 like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.7   0.1     0.003       8.9       5      27 ..      84     106 ..      81     122 .. 0.85
   2 ?    1.0   0.0     0.082   2.4e+02     103     144 ..     173     215 ..     155     218 .. 0.80
   3 ?    4.8   0.0    0.0058        17     147     178 ..     237     270 ..     232     287 .. 0.81

  Alignments for each domain:
  == domain 1  score: 5.7 bits;  conditional E-value: 0.003
     DUF3335   5 kQtteFtCGpaallmamaaldke 27 
                 kQ t + CG a+ +ma+ al ++
  KOO22210.1  84 KQETTWDCGLACTQMALGALGHT 106
                 799**************999875 PP

  == domain 2  score: 1.0 bits;  conditional E-value: 0.082
     DUF3335 103 eeaeeagvevekeelsleeleealakga.lvlvListyrldgk 144
                 + a+ +gv v +++ls++el + +++ + +v++L++  +++++
  KOO22210.1 173 SAAAVEGVVVLERTLSATELWNLMRAEEtIVIMLVDVTKIHRR 215
                 567788999999********99998765167789998888775 PP

  == domain 3  score: 4.8 bits;  conditional E-value: 0.0058
     DUF3335 147 PHWvlvtglddef..lylhDPdvdeeeeetalda 178
                  H+vlvtgldde   ++++DP  ++e++  ++d+
  KOO22210.1 237 GHYVLVTGLDDERggFVVNDPARNDERTFVHADS 270
                 6*******99874449******887776665554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (317 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       464  (0.0258799); expected 358.6 (0.02)
Passed bias filter:                      415  (0.0231469); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.48u 0.27s 00:00:00.75 Elapsed: 00:00:00.43
# Mc/sec: 2220.64
//
Query:       KOO22211.1  [L=535]
Description: amine oxidase, partial [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
      2e-64  218.5   2.1      4e-64  217.6   2.1    1.4  1  Amino_oxidase  Flavin containing amine oxidoreductase
    2.1e-08   34.3   0.8    0.00097   19.1   0.1    2.4  2  NAD_binding_9  FAD-NAD(P)-binding
    6.4e-08   32.7   0.4    1.9e-07   31.2   0.4    1.9  1  NAD_binding_8  NAD(P)-binding Rossmann-like domain
     0.0004   19.7   0.1    0.00075   18.8   0.1    1.4  1  Thi4           Thi4 family
     0.0013   18.0   0.5       0.15   11.3   0.2    2.4  2  Pyr_redox_2    Pyridine nucleotide-disulphide oxidoreductase
     0.0016   17.8   0.3       0.28   10.4   0.1    2.4  2  Pyr_redox_3    Pyridine nucleotide-disulphide oxidoreductase
     0.0017   17.1   0.1        1.1    7.9   0.0    2.2  2  HI0933_like    HI0933-like protein
  ------ inclusion threshold ------
      0.017   14.7   6.6      0.058   13.0   6.6    2.2  1  DAO            FAD dependent oxidoreductase
      0.018   14.8   0.2      0.052   13.4   0.1    1.8  2  RMI2           RecQ-mediated genome instability protein 2
      0.043   13.1   0.2      0.083   12.2   0.2    1.4  1  AlaDh_PNT_C    Alanine dehydrogenase/PNT, C-terminal domain
       0.12   12.9   0.2        1.1    9.9   0.1    2.3  2  Pyr_redox      Pyridine nucleotide-disulphide oxidoreductase
        1.9    8.8   4.9        1.5    9.2   2.0    2.4  2  FLgD_tudor     FlgD Tudor-like domain


Domain annotation for each model (and alignments):
>> Amino_oxidase  Flavin containing amine oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  217.6   2.1   2.7e-67     4e-64       2     444 ..      32     492 ..      31     494 .. 0.84

  Alignments for each domain:
  == domain 1  score: 217.6 bits;  conditional E-value: 2.7e-67
                    HHHHHHHHH......HHTT..EEEEEEESSSSSBTTS-EEEET............TEEEESS--EEET..TTHHHHHHHHHTTCCCCEE...EESC CS
  Amino_oxidase   2 aGLaaArqL......lsaG..fdVtvlEardrvGGRirtvrsd............GylielGamwftg..agnpllellkelgledsls...lpdp 72 
                    +GLaaAr+L       ++G  +++tvlEa  r+GGR +t + +            G + ++Ga+w++g  + +p+++++  lgl +      ++d+
     KOO22211.1  32 SGLAAARTLtdtwdtDENGgpLELTVLEAGTRIGGRTWTLNASeagaawntagalGAPTDMGASWIHGstSTHPITKIATALGLATGSGlvrTRDN 127
                    9**********999855557*************************99999999999*****************************97665555555 PP

                    CGCEEEEETTEECC.TTEECHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHH..........HHHCCCCHHHHHHHHHCHHHHHHHHHHHHHHH CS
  Amino_oxidase  73 gapkrvlskggref.pgdlspvpaewealleqgalsaellsleeklrlgleall..........qktldeldldskslaesleelgrrepgdvevw 157
                     a+ r+ ++g++ +  ++ ++   ++e+ll+q++ s          + +++ +           +++ +e +l + +la+  e++ + + ++  +w
     KOO22211.1 128 LAELRLCTAGKTSAcSEPNNDEFTAYENLLSQAQES---------AEDSDTDISlwqalsglssSGQNRESKLFQYHLATGAEFNTAGPVTQLSAW 214
                    588888888888886666666688889999955555.........222222222222222233566677778888888888888888888888888 PP

                    HHHHHHHHHHHHHHHHHCHTSTTTTCBHHHHTCCCCHHHHHTSCCCEETTHTHHHHHHHHH..TTTTEEEETSEEEEEEEEETTCEEEEETTSTEE CS
  Amino_oxidase 158 drliepelfaklefasglfagdpselsaklalpllwelegfggslllprgGlsqlpealae..elrgldirlntrVkeikregdgvtvtledgevv 251
                    ++ ++          sg+ + +        a   +  +e  +++ +++ +G s+l  a  +  ++ +  + +n+rV+++++++ gv +t+ dg+++
     KOO22211.1 215 NYDDDS-------QYSGTELVW--------AQGYKVMYEALQSGAVRVNDGSSTLQVAAVAsaSRQPILVTYNKRVTSVTYSSTGVVLTTADGSTY 295
                    888885.......666764433........23333444444455555589999998888886777788999************************* PP

                    EESEEEE-S-HHHHH......SSEEESCCSHHHHHHHHHSEEEEEEEEEEEESSGGSGCSTS.ECECECCCEEETTTEEEEECCECCCSTTTEEEE CS
  Amino_oxidase 252 eaDaVvvTvplgvlk......ailfsPplpdekaeairnlgfgsvnkvilefdrkfwednal.gqgvlvseltttlgeafissdfpsrappgkglv 340
                    +aD+V++T+plgvlk      +++fsP lp++ a+ i +lgfg+v+k+ l f++ +w+   + +    +++  t++g   ++   + +a ++k++ 
     KOO22211.1 296 NADYVIITIPLGVLKstdassRVTFSPALPPATANGISQLGFGNVVKIALLFPTVWWPTGTHyY---GLAQAGTDRGLFTYF--LNVHALSTKPV- 385
                    ***********************************************************77766...8**********9999..78999999999. PP

                    EEEEECHHHHHHHTTS-HHHHHHHHHHHHHHHHT...GTSSTCSEEEEEECCTETTTSSSEEE.BTTHHHHHHHHHHCHHCSTTEEE.SGGGCTTT CS
  Amino_oxidase 341 llvyvggdaaneleslsdeelvqavlrdLrklfg...eevpepkatlvtrWhtdplargsysyvsvgpghedydplakpegdprlffAGehtsrey 433
                    l+++  g  a+  e++s+ +++ +++ +L k+f+   +      +++++ W+++pla+g+y+yv+vg++ + + +    +  +rlffAGehts  y
     KOO22211.1 386 LMTFALGASADTAEGMSNAAVWTQIRANLVKIFPrsvTVPTTAPQMIRSTWRANPLAKGAYTYVAVGTSKNTITAAFGGNVGGRLFFAGEHTSAAY 481
                    ****99****************************66555555555***********************999888888888999************* PP

                    TTSHHHHHHHH CS
  Amino_oxidase 434 pgtvegAilSG 444
                     gtv+gA+++G
     KOO22211.1 482 RGTVHGAFQTG 492
                    **********9 PP

>> NAD_binding_9  FAD-NAD(P)-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.1   0.1   6.5e-07   0.00097       1      48 [.      25      75 ..      25      91 .. 0.87
   2 !   13.3   0.1   4.2e-05     0.063     107     152 ..     258     303 ..     252     305 .. 0.86

  Alignments for each domain:
  == domain 1  score: 19.1 bits;  conditional E-value: 6.5e-07
  NAD_binding_9  1 aivGaGprGlavlerLlara...kkkspleitlfdp.sepgagrvwrtdqse 48
                   ++vGaG +Gla+++ L +     +++ ple+t+ +  + +g gr w  + se
     KOO22211.1 25 VVVGAGTSGLAAARTLTDTWdtdENGGPLELTVLEAgTRIG-GRTWTLNASE 75
                   69*****************999889999********77779.****988755 PP

  == domain 2  score: 13.3 bits;  conditional E-value: 4.2e-05
  NAD_binding_9 107 llarlpegvtvevhraevvdleeradgqavlladgaslaadaVvLA 152
                    ++a+++++  +  ++++v++++ + +g+ +++adg+++ ad+V+++
     KOO22211.1 258 AVASASRQPILVTYNKRVTSVTYSSTGVVLTTADGSTYNADYVIIT 303
                    556666666677889*****************************98 PP

>> NAD_binding_8  NAD(P)-binding Rossmann-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.2   0.4   1.3e-10   1.9e-07       1      63 [.      26     108 ..      26     113 .. 0.78

  Alignments for each domain:
  == domain 1  score: 31.2 bits;  conditional E-value: 1.3e-10
                    EE--SHHHHHHHHHHHC....C....TEEEEEE-SSSSSSGGG-EECE.......TT.....CEECTS---EEETTHHHHCHH CS
  NAD_binding_8   1 IvGaGlsGlvaAylLak....a....gfdvlllekrdrlGGraasyev.......pg.....vrvdygahifhgsgyypnvrr 63 
                    +vGaG sGl+aA++L++    +     ++ ++le+++r+GGr  + +        +       + d ga+++hgs   + +++
     KOO22211.1  26 VVGAGTSGLAAARTLTDtwdtDenggPLELTVLEAGTRIGGRTWTLNAseagaawNTagalgAPTDMGASWIHGSTSTHPITK 108
                    8***************744441467677**************99998877666651155788999********9866666665 PP

>> Thi4  Thi4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.8   0.1     5e-07   0.00075      13      58 ..      17      69 ..       9      73 .. 0.78

  Alignments for each domain:
  == domain 1  score: 18.8 bits;  conditional E-value: 5e-07
                HHHTEEEEEEE--SHHHHHHHHHHHHCTT.......S-EEEEESSSS--TTTT CS
        Thi4 13 lkyaesDvvivGaGssGLtaayylakkpd.......lkvailersvspGGGaw 58
                +  a   vv+vGaG+sGL+aa++l+   d       l++++le+   +GG +w
  KOO22211.1 17 DLVATVKVVVVGAGTSGLAAARTLTDTWDtdenggpLELTVLEAGTRIGGRTW 69
                5567889*****************86522123344489999999999999999 PP

>> Pyr_redox_2  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.3   0.2   9.8e-05      0.15       2      22 ..      23      49 ..      18     106 .. 0.75
   2 ?    4.6   0.0     0.011        16     189     235 ..     258     304 ..     213     319 .. 0.72

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 9.8e-05
                 SEEEE--SHHHHHHHHHHHH......H CS
                 xxxxxxxxxxxxxxxxxxxx......x RF
  Pyr_redox_2  2 dvvviGgGpAGlaaaltlaq......a 22
                 +vvv+G+G  Glaaa+tl        +
   KOO22211.1 23 KVVVVGAGTSGLAAARTLTDtwdtdeN 49
                 688888888888888888764444441 PP

  == domain 2  score: 4.6 bits;  conditional E-value: 0.011
                  HHHHHHHTTEEEEESCEEEEEEETTEEEEEEETTSCEEEESEEEE-S CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2 189 leealekeGvevklgtsvkeidgngeklevvledgeeidadlvvvav 235
                  + +   ++ + v  +++v+ ++  ++ + +++ dg++++ad+v++ +
   KOO22211.1 258 AVASASRQPILVTYNKRVTSVTYSSTGVVLTTADGSTYNADYVIITI 304
                  44445555667777888888888887777888888888888888876 PP

>> Pyr_redox_3  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.6   0.0     0.011        16     161     183 ..      18      40 ..       6      47 .. 0.68
   2 !   10.4   0.1   0.00019      0.28      92     131 ..     263     303 ..     258     305 .. 0.89

  Alignments for each domain:
  == domain 1  score: 4.6 bits;  conditional E-value: 0.011
  Pyr_redox_3 161 kyagqkvvViGgknSavDaAlel 183
                   +a+ kvvV+G++ S+  aA  l
   KOO22211.1  18 LVATVKVVVVGAGTSGLAAARTL 40 
                  55666777777777777666555 PP

  == domain 2  score: 10.4 bits;  conditional E-value: 0.00019
  Pyr_redox_3  92 ksfelpiklfeeVesvkkedegfevetske.tyeAkkviiA 131
                  +++ + + ++++V+sv+ +++g +++t  + ty+A++vii 
   KOO22211.1 263 SRQPILVTYNKRVTSVTYSSTGVVLTTADGsTYNADYVIIT 303
                  56778899*******************9987********96 PP

>> HI0933_like  HI0933-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.1   0.1    0.0013       1.9       2      20 ..      23      41 ..      22      65 .. 0.88
   2 !    7.9   0.0   0.00075       1.1      85     161 ..     229     303 ..     220     309 .. 0.87

  Alignments for each domain:
  == domain 1  score: 7.1 bits;  conditional E-value: 0.0013
                 SEEEE--SHHHHHHHHHHH CS
  HI0933_like  2 dviviGgGaAGlmaAisaa 20
                 +v+v+G+G +Gl aA ++ 
   KOO22211.1 23 KVVVVGAGTSGLAAARTLT 41
                 79*************8874 PP

  == domain 2  score: 7.9 bits;  conditional E-value: 0.00075
                  HHHHTT--EEE-STTEEEETT.-CHHHHHHHHHHHHHHT-EEE-S--EEEEECETTE.EEEEE.TTEEEEESEEEE- CS
  HI0933_like  85 lveelgvelkeedsgrlFpvsdkaedivdallkelkeagvklrletevksvekeedgkfrvktkseeeleadklvlA 161
                  +++ ++v ++  +sg +  ++  ++++  a ++ ++++ + + ++++v+sv+++++g + ++t ++++++ad+++++
   KOO22211.1 229 WAQGYKVMYEALQSGAVRVND-GSSTLQVAAVASASRQPILVTYNKRVTSVTYSSTG-VVLTTADGSTYNADYVIIT 303
                  889999999999999998888.8999999999999******************9999.667777***********98 PP

>> DAO  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   6.6   3.9e-05     0.058       1      38 [.      23      69 ..      23     465 .. 0.68

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 3.9e-05
                EEEEECTSHHHHHHHHHHHHT......T....EEEEESSSSTTSSGGG CS
         DAO  1 dvviiGGGiiGlstAyeLarr......g....VtllekgdiagsgaSg 38
                +vv++G+G  Gl++A+ L+        g     t+le+g ++g g ++
  KOO22211.1 23 KVVVVGAGTSGLAAARTLTDTwdtdenGgpleLTVLEAGTRIG-GRTW 69
                59****************643333334479*********8877.3332 PP

>> RMI2  RecQ-mediated genome instability protein 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.1   3.5e-05     0.052       4      79 ..     190     266 ..     188     289 .. 0.73
   2 ?   -2.6   0.0       2.9   4.4e+03      35      52 ..     399     418 ..     383     456 .. 0.55

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 3.5e-05
        RMI2   4 KlllsqLretseedgsssaatlrllraavgreglevsrvWlQGtvvevdaske.sllldDgtgvfvveglnelpktk 79 
                 Kl+   L++ +e + +++ ++l  ++    ++    + vW QG+ v+ +a ++ +++++Dg+ +++v ++ + ++++
  KOO22211.1 190 KLFQYHLATGAEFNTAGPVTQLSAWNYDDDSQYSGTELVWAQGYKVMYEALQSgAVRVNDGSSTLQVAAVASASRQP 266
                 56666666444444555555555555555556667899********99998888*************9999887766 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 2.9
        RMI2  35 eglevsrvWlQ..Gtvvevd 52 
                 eg+  ++vW Q  + +v++ 
  KOO22211.1 399 EGMSNAAVWTQirANLVKIF 418
                 55556666665223344333 PP

>> AlaDh_PNT_C  Alanine dehydrogenase/PNT, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.2   5.6e-05     0.083      18      47 ..      11      40 ..       3      44 .. 0.81

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 5.6e-05
                 ETTCEETCB---EEEEESTSHHHHHHHHHH CS
  AlaDh_PNT_C 18 tlaGgvpgvepakvlviGgGvaGlqAiata 47
                 +l++    v+  kv+v+G+G+ Gl+A++t 
   KOO22211.1 11 LLVTSFDLVATVKVVVVGAGTSGLAAARTL 40
                 566666678899***************985 PP

>> Pyr_redox  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   0.1   0.00074       1.1       1      20 [.      23      42 ..      23      70 .. 0.81
   2 ?    0.2   0.0      0.75   1.1e+03      52      78 ..     264     287 ..     253     292 .. 0.77

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.00074
                EEEEECSSHHHHHHHHHHHH CS
   Pyr_redox  1 kvvvvGgGyiglElAgalae 20
                kvvvvG+G++gl +A +l++
  KOO22211.1 23 KVVVVGAGTSGLAAARTLTD 42
                79**************9976 PP

  == domain 2  score: 0.2 bits;  conditional E-value: 0.75
                 HTTEEEECSEEEEEEEEETTSEEEEEE CS
   Pyr_redox  52 kngievllntkveeiegsedgvesvkl 78 
                 ++ i v +n++v++++ s+ g   v+l
  KOO22211.1 264 RQPILVTYNKRVTSVTYSSTG---VVL 287
                 556778899*******99998...443 PP

>> FLgD_tudor  FlgD Tudor-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.2   2.0   0.00098       1.5      27      57 ..     271     300 ..     232     301 .. 0.82
   2 ?   -2.7   0.1       5.1   7.6e+03      12      24 ..     420     458 ..     420     468 .. 0.64

  Alignments for each domain:
  == domain 1  score: 9.2 bits;  conditional E-value: 0.00098
                 EEEEEEEEEE.ETTEEEEEETTEE.EECCCB CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  FLgD_tudor  27 vygtVdsVslstggglmLnLglggtvplsdV 57 
                  + +V+sV++ +++g++L  ++g+t + + V
  KOO22211.1 271 YNKRVTSVTY-SSTGVVLTTADGSTYNADYV 300
                 5679******.999999*******9998866 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 5.1
                 SEEEEE..........................TEEEEE- CS
                 xxxxxx..........................xxxxxxx RF
  FLgD_tudor  12 keVlvp..........................Gtsvaat 24 
                 ++V+vp                          Gts ++ 
  KOO22211.1 420 RSVTVPttapqmirstwranplakgaytyvavGTSKNTI 458
                 678888777777777777777777776666665555533 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (535 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       512  (0.0285571); expected 358.6 (0.02)
Passed bias filter:                      369  (0.0205812); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                        13  (0.000725082); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.58u 0.30s 00:00:00.87 Elapsed: 00:00:00.43
# Mc/sec: 3711.36
//
Query:       KOO22212.1  [L=1650]
Description: protein strawberry notch-like protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
   1.6e-108  362.2   0.0   2.8e-108  361.4   0.0    1.4  1  AAA_34         P-loop containing NTP hydrolase pore-1
    5.8e-99  331.2   0.1    2.1e-98  329.3   0.0    2.0  2  Helicase_C_4   C-terminal domain on Strawberry notch homologu
      0.007   16.7   0.0      0.018   15.4   0.0    1.7  1  Helicase_C     Helicase conserved C-terminal domain
     0.0093   16.5   0.2      0.033   14.7   0.0    2.0  2  Carbpep_Y_N    Carboxypeptidase Y pro-peptide
  ------ inclusion threshold ------
      0.036   12.8   0.1        1.1    7.9   0.0    2.1  2  Peptidase_S37  PS-10 peptidase S37
       0.58    9.2  15.2       0.06   12.4   2.1    2.4  2  BAF1_ABF1      BAF1 / ABF1 chromatin reorganising factor


Domain annotation for each model (and alignments):
>> AAA_34  P-loop containing NTP hydrolase pore-1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  361.4   0.0  9.4e-112  2.8e-108       1     303 []     137     475 ..     137     475 .. 0.92

  Alignments for each domain:
  == domain 1  score: 361.4 bits;  conditional E-value: 9.4e-112
      AAA_34   1 eHpdpvvesaslasveppdvtyklklpk.......evve..egklSalQleavvyacqrheellpdgkRaGfllGDgaGvGkgrqiagiilenllqgrk 90 
                 +Hpdp+ve++sl+  e+p+++ + + p        +  +   g+lS++Qle+v ya++rhe +lp+g+RaGf+lGDg G+Gkgrq+agi+l+n+++g k
  KOO22212.1 137 PHPDPIVETTSLSFAELPKIKHTFSAPLkrihepsSAANpyGGSLSKAQLETVAYAAMRHELRLPNGNRAGFFLGDGVGLGKGRQLAGIVLDNWARGIK 235
                 6******************9984443331122222332222599******************************************************* PP

      AAA_34  91 kavwvsvsedLkeDaerDlkdigaseievvalnklkegkkik....eseelkeGvlFvtYstliseskkkkksrleqlveWlg.edfdGvivfDEchka 184
                 +++wvsvs+dL  DaerDl+diga++++++++ k++++++++       +++eGvlF+tYs+l ++s +k  +r + +veWlg + ++G+i+fDE+hka
  KOO22212.1 236 RHLWVSVSADLCVDAERDLRDIGATDVRIINITKTSYASRLEaqkvDGLKFTEGVLFATYSALLGASGNK--KRTQMIVEWLGgNGAQGCILFDEAHKA 332
                 **************************************9888777656799*************999984..7**********999************* PP

      AAA_34 185 knlakseekka........................tktgkavlelqkklpkArvvYvsaTgasepknlaYmsRLglwgegtafkdfedflealekrgvg 259
                 knl++++++ka                        tk++kav elq+ +p+ArvvY+saTga+ + nlaY+sRLglwg++t+f+df++f +a++++g+g
  KOO22212.1 333 KNLHPEADEKAekaaadlaagrpvagrgkgtkgksTKMAKAVEELQQLCPSARVVYCSATGAASIANLAYTSRLGLWGPQTSFPDFTKFEKAISAGGTG 431
                 *****886666677888888999999999999988999************************************************************* PP

      AAA_34 260 alelvamdlkakGlyvaRtLSfegvefellevelseeqievYda 303
                 a+elva d+k++G+y++R+LSf+ ++++ l ++l+e q+++Yd+
  KOO22212.1 432 AMELVALDMKRRGMYISRQLSFASASYSQLIIDLTEPQQKMYDE 475
                 ******************************************95 PP

>> Helicase_C_4  C-terminal domain on Strawberry notch homologue
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.0      0.82   2.5e+03      20      43 ..     814     837 ..     809     847 .. 0.75
   2 !  329.3   0.0    7e-102   2.1e-98       1     272 []    1005    1296 ..    1005    1296 .. 0.88

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 0.82
  Helicase_C_4  20 tgRkgrvvrkkegkvvyekraekd 43 
                    gR++rvv++++g+  ++  +e++
    KOO22212.1 814 KGRRRRVVQDEDGSDLMDDEDEDE 837
                   69*********9887776666644 PP

  == domain 2  score: 329.3 bits;  conditional E-value: 7e-102
  Helicase_C_4    1 naLDelidelGGpekVAEltgRkgrvvrkkegkvvyekrae.......kdveldsinlaekeaFmdgeKliaiiSeAastGiSlhadrraenqrr 88  
                    n+LD+l+++lGGpe+VAE+tgRkgr+vr+++g++vy kr++       ++v+++++nlae++aFm+geKl+aiiSeAas+GiSl+adrr+ n+r 
    KOO22212.1 1005 NPLDSLLHALGGPEHVAEMTGRKGRLVRDASGATVYAKRNDglvdpdgHKVTMEKVNLAERKAFMNGEKLVAIISEAASSGISLQADRRVPNTRV 1099
                    89***************************************99999999999******************************************* PP

  Helicase_C_4   89 RvhitlelpwsadkaiqqlGrthRsnqasaPeyrllvtelaGerRfasavArrLesLGAltrgdrraaegrdlsefnldskygrkaLeevlksiv 183 
                    Rvhitlelpwsad+ iqq GrthRsnq+++Pey l++t  +GerRfas+  +rL+++GAlt+gdrraa+++dls+f++d++ygrka+++vl++  
    KOO22212.1 1100 RVHITLELPWSADQCIQQCGRTHRSNQLHGPEYCLVMTAAGGERRFASMLCKRLQNMGALTKGDRRAADASDLSNFDVDTSYGRKAMRTVLELTE 1194
                    ********************************************************************************************999 PP

  Helicase_C_4  184 gkk.lelvslpefltdv....................kealesvgllkaekaleaealekdlskvskfLnRllglevelQnalfkyftetleaei 257 
                    + +  + +++p+ + ++                    ++al +           ++  + d  +v++fLnRllgl++++Qn+lf+ f + l+++i
    KOO22212.1 1195 SPDfYSQTPPPKHVRETlglalnadlqrkwreyleigQDALIEC--------GVTDGRDMDKVTVKTFLNRLLGLPIRTQNLLFSHFAAELDEQI 1281
                    66656666666633322333444444444322222223333333........344445667889******************************* PP

  Helicase_C_4  258 ekakkegkydegied 272 
                    +kak+e k+deg++d
    KOO22212.1 1282 KKAKEEDKFDEGVVD 1296
                    *************87 PP

>> Helicase_C  Helicase conserved C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.0   5.9e-06     0.018      60     110 ..    1066    1124 ..    1052    1125 .. 0.73

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 5.9e-06
                  HHHHTTSSSEEEESGGGTSSSTSTTESEEEESSSS........SSHHHHHHHHTTSSST CS
  Helicase_C   60 eqfnkgesdvLiatdvaerGidipkvnlVinfdlp........rnvtsyiqriGRtgRa 110 
                  ++f +ge  v i + +a+ Gi ++  + V n  +         ++ +++iq+ GRt+R 
  KOO22212.1 1066 KAFMNGEKLVAIISEAASSGISLQADRRVPNTRVRvhitlelpWSADQCIQQCGRTHRS 1124
                  4677888888899999999999986555554433333333333***************7 PP

>> Carbpep_Y_N  Carboxypeptidase Y pro-peptide
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   0.0   1.1e-05     0.033      66     114 ..     465     513 ..     436     516 .. 0.91
   2 ?   -4.1   0.0         6   1.8e+04      56      76 ..    1267    1287 ..    1258    1289 .. 0.73

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 1.1e-05
  Carbpep_Y_N  66 lneplkeltseakkiWsemelkfPdavsklkfktkpkkketkksdkfWd 114
                  l ep +++  ea   Ws+m+  f +a++ l++k   k + +++ ++fW 
   KOO22212.1 465 LTEPQQKMYDEAARFWSDMQGCFTTALEMLRVKEREKHPAKRVMSQFWG 513
                  88999*******************************************6 PP

  == domain 2  score: -4.1 bits;  conditional E-value: 6
  Carbpep_Y_N   56 nnvfekiskvlneplkeltse 76  
                   n +f++ +  l+e++k++++e
   KOO22212.1 1267 NLLFSHFAAELDEQIKKAKEE 1287
                   444888888899999988877 PP

>> Peptidase_S37  PS-10 peptidase S37
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.9   0.0   0.00036       1.1     337     403 ..      34      98 ..      15     110 .. 0.78
   2 ?    2.5   0.0     0.016        47     368     430 ..     197     259 ..     187     268 .. 0.76

  Alignments for each domain:
  == domain 1  score: 7.9 bits;  conditional E-value: 0.00036
  Peptidase_S37 337 pwamrdvdtwvrhnarhmlfvygendpwgaerfrlghgardsyvltapgmnhganvaglvpdqkara 403
                     w   dv t  +  + h   v     pw +er++l + a+ s v t p  +  a  a  v      a
     KOO22212.1  34 CWLCDDVWTKCKDWSAH--CVCDGTPPWATERLKLKQKAQASKVSTVPAADVAARFAAAVAAADGSA 98 
                    56666665555555555..5778899**************************999998887655444 PP

  == domain 2  score: 2.5 bits;  conditional E-value: 0.016
  Peptidase_S37 368 rfrlghgardsyvlt.apgmnhganvaglvpdqkaratarildwagvapakvqenpsaarplat 430
                     +rl  g r  + l    g+ +g ++ag+v d+ ar   r l w  v+     +     r + +
     KOO22212.1 197 ELRLPNGNRAGFFLGdGVGLGKGRQLAGIVLDNWARGIKRHL-WVSVSADLCVDAERDLRDIGA 259
                    479999***9999962579*******************9988.777766555555555555555 PP

>> BAF1_ABF1  BAF1 / ABF1 chromatin reorganising factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   2.1     2e-05      0.06     136     188 ..      70     122 ..      59     149 .. 0.76
   2 ?    1.7   5.5     0.035   1.1e+02     353     464 ..     845     954 ..     801    1003 .. 0.46

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 2e-05
   BAF1_ABF1 136 kkkeadaadedddvsaaiaaAVaavadsknakeekkeekakkeedaeentnkn 188
                  + ++ +++  +dv a +aaAVaa++ s+++ ++++++++++e+d+++++n++
  KOO22212.1  70 AQASKVSTVPAADVAARFAAAVAAADGSAASASADDQQQDQQETDQKDEENEE 122
                 233334478899************99888888877777777777777766654 PP

  == domain 2  score: 1.7 bits;  conditional E-value: 0.035
   BAF1_ABF1 353 eeslesteaaliskeektrpssalsiesnskaasskkskskkekeinanddkeelseeskdkeeetnseree.rqkeleseakeaqaaAqaainesssl 450
                 ++s + + +a++  ++ + p + + ++++  +as ++s+s++e++   +dd++     s++k +   ++ +   +    +  k+a aaA aa +++++ 
  KOO22212.1 845 HSSAKGKAKAKAAPSRRPPPRRRVVVNDSDVSASASDSDSESEDAYVDEDDSDY----SRPKGNRAAAKSKRaVKAPPPAALKKAPAAAVAAAGKKVAP 939
                 333333334444444444444444444444433333333333333222222221....11111111111111111122223333444444444444443 PP

   BAF1_ABF1 451 krtlae.eddnenee 464
                 kr+ a+  dd+e+ +
  KOO22212.1 940 KRRKAAaSDDDEDDS 954
                 333322233333222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1650 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1237  (0.0689944); expected 358.6 (0.02)
Passed bias filter:                      642  (0.0358079); expected 358.6 (0.02)
Passed Vit filter:                        59  (0.00329076); expected 17.9 (0.001)
Passed Fwd filter:                        21  (0.00117129); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 1.21u 0.33s 00:00:01.54 Elapsed: 00:00:00.51
# Mc/sec: 9753.20
//
Query:       KOO22213.1  [L=451]
Description: sphingomyelin acid-like 3b [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    5.4e-09   36.8   0.0    3.2e-08   34.3   0.0    2.0  1  Metallophos  Calcineurin-like phosphoesterase


Domain annotation for each model (and alignments):
>> Metallophos  Calcineurin-like phosphoesterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.3   0.0   1.8e-12   3.2e-08       1      76 [.      49     170 ..      49     260 .. 0.76

  Alignments for each domain:
  == domain 1  score: 34.3 bits;  conditional E-value: 1.8e-12
                  EEEEEEESBTB...........................TTCCTHHHHHHHHH....HHHHHHTTESEEEEESTSSSSS............HHHHHHHH CS
  Metallophos   1 lrilvigDlHl...........................algggqlddllkll....ddllreekpdlvllaGDlvdrg............dlekelle 55 
                  +ri++++D+H+                             ++ + +d++++     + + +e+ pd++l+ GD++ +             +     + 
   KOO22213.1  49 IRIWHLTDVHFnlwhdrrgnvrdmcrtaaadaslhpgkFGHFNCDPDFAAVElavaRMTEAEPAPDMILFGGDVFGHVpashensasvreS----HEA 142
                  59******************************8888875555555555544422235558889**********999999999999975432....333 PP

                  HHHHHHHH..TSEEEEEC-TTS.....C CS
  Metallophos  56 llaalvky..pipvylllGNHe.....g 76 
                  l +al ky  ++pv ++lGNH+     +
   KOO22213.1 143 LARALQKYfpRTPVLPCLGNHDtipyfA 170
                  33444444557***********554440 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (451 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       302  (0.0168442); expected 358.6 (0.02)
Passed bias filter:                      252  (0.0140554); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.27s 00:00:00.74 Elapsed: 00:00:00.42
# Mc/sec: 3217.19
//
Query:       KOO22214.1  [L=533]
Description: u3 small nucleolar RNA-associated protein 18-like protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    7.9e-13   48.7   0.1      0.026   15.4   0.1    5.6  6  WD40          WD domain, G-beta repeat
    1.1e-08   35.3   0.0       0.21   11.9   0.0    5.2  5  ANAPC4_WD40   Anaphase-promoting complex subunit 4 WD40 domai
     0.0078   14.8   0.0       0.18   10.3   0.0    2.2  2  Cytochrom_D1  Cytochrome D1 heme domain
  ------ inclusion threshold ------
      0.017   14.1   0.2        5.8    5.8   0.1    3.0  3  Ge1_WD40      WD40 region of Ge1, enhancer of mRNA-decapping 
       0.13   12.0   3.4       0.24   11.2   3.4    1.4  1  Pox_Ag35      Pox virus Ag35 surface protein


Domain annotation for each model (and alignments):
>> WD40  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.3   0.0   0.00062       2.2      15      37 ..     230     252 ..     212     253 .. 0.85
   2 ?   -3.4   0.0         5   1.8e+04      13      25 ..     272     284 ..     266     288 .. 0.75
   3 !   14.3   0.0   1.6e-05     0.058      15      38 .]     365     388 ..     347     388 .. 0.87
   4 !   15.4   0.1   7.2e-06     0.026       3      37 ..     394     430 ..     392     431 .. 0.80
   5 ?    0.6   0.0      0.35   1.3e+03      12      25 ..     453     466 ..     443     473 .. 0.80
   6 ?    0.4   0.0       0.4   1.4e+03      13      37 ..     501     525 ..     490     526 .. 0.83

  Alignments for each domain:
  == domain 1  score: 9.3 bits;  conditional E-value: 0.00062
                 EEEEETTSSEEEEEETTSEEEEE CS
        WD40  15 slafspdgawlasGsdDgtvriW 37 
                 ++ ++p+g++ ++++ D+t+r++
  KOO22214.1 230 AVEWHPNGKLALTAGPDKTLRLF 252
                 567*******99*********97 PP

  == domain 2  score: -3.4 bits;  conditional E-value: 5
                 EEEEEEETTSSEE CS
        WD40  13 vtslafspdgawl 25 
                 + s  fs+dga +
  KOO22214.1 272 IQSATFSHDGAQV 284
                 6677799999865 PP

  == domain 3  score: 14.3 bits;  conditional E-value: 1.6e-05
                 EEEEETTSSEEEEEETTSEEEEEE CS
        WD40  15 slafspdgawlasGsdDgtvriWd 38 
                 + +fs dg +l ++++  tvr+Wd
  KOO22214.1 365 CSCFSADGEYLYTSGEGSTVRVWD 388
                 4469*******************9 PP

  == domain 4  score: 15.4 bits;  conditional E-value: 7.2e-06
                 EEEEEESSSS..EEEEEEETTSSEEEEEETTSEEEEE CS
        WD40   3 clrtltGHss..vtslafspdgawlasGsdDgtvriW 37 
                 c++t++  ++  vtsla spdga la+Gsd g v ++
  KOO22214.1 394 CVHTWSDRGGlrVTSLAASPDGAQLAAGSDSGAVNLY 430
                 777776443378*****************88888776 PP

  == domain 5  score: 0.6 bits;  conditional E-value: 0.35
                 SEEEEEEETTSSEE CS
        WD40  12 svtslafspdgawl 25 
                  vt la++p++ +l
  KOO22214.1 453 AVTTLAYHPSSELL 466
                 49********9997 PP

  == domain 6  score: 0.4 bits;  conditional E-value: 0.4
                 EEEEEEETTSSEEEEEETTSEEEEE CS
        WD40  13 vtslafspdgawlasGsdDgtvriW 37 
                 v + af p++ ++a G d g+v ++
  KOO22214.1 501 VQATAFAPHSGYMAIGNDQGKVLLY 525
                 666789**********999999886 PP

>> ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.5   0.0    0.0057        20      28      66 ..     214     253 ..     204     259 .. 0.73
   2 !    6.8   0.0    0.0024       8.5       4      77 ..     323     399 ..     320     402 .. 0.75
   3 !   11.9   0.0   5.9e-05      0.21      29      72 ..     386     437 ..     383     446 .. 0.81
   4 !    5.0   0.0    0.0085        31      38      81 ..     451     496 ..     444     507 .. 0.83
   5 ?   -0.5   0.0      0.43   1.5e+03       3      25 ..     506     528 ..     504     530 .. 0.76

  Alignments for each domain:
  == domain 1  score: 5.5 bits;  conditional E-value: 0.0057
  ANAPC4_WD40  28 rvwtleedked.sevrsLaWkpdgklLavaysdgevrlld 66 
                  r+ +l++++++ s  ++++W+p+gkl   a  d ++rl+ 
   KOO22214.1 214 RLTDLNAQERNvSLTQAVEWHPNGKLALTAGPDKTLRLFR 253
                  55555334444044569*********99999999999875 PP

  == domain 2  score: 6.8 bits;  conditional E-value: 0.0024
  ANAPC4_WD40   4 cptmDLiAlatedgellvfRl.ngqrvwtleedkedse..vrsLaWkpdgklLavaysdgevrlldaesgkvvhsls 77 
                  cp    +Al  e+g +l+    + q + tl+ ++ +s+   ++ +++ dg+ L  + + ++vr+ d     +vh++s
   KOO22214.1 323 CPAGGTLALLAESGAVLLVSAaSKQLIATLQPAGGGSKfaTQCSCFSADGEYLYTSGEGSTVRVWDLRRRCCVHTWS 399
                  67777789999999887665526677777755555554115688999999999999999999999999999999875 PP

  == domain 3  score: 11.9 bits;  conditional E-value: 5.9e-05
  ANAPC4_WD40  29 vwtl........eedkedsevrsLaWkpdgklLavaysdgevrlldaesgkv 72 
                  vw+l         +d  + +v+sLa +pdg  La + + g+v+l+   ++++
   KOO22214.1 386 VWDLrrrccvhtWSDRGGLRVTSLAASPDGAQLAAGSDSGAVNLYRTADAQL 437
                  5555555555555678999*************************99887765 PP

  == domain 4  score: 5.0 bits;  conditional E-value: 0.0085
  ANAPC4_WD40  38 dsevrsLaWkpdgklLavaysdg..evrlldaesgkvvhslsvkse 81 
                   s v+ La++p+ +lL +a + +  ++r+ ++  g+v  +++++++
   KOO22214.1 451 TSAVTTLAYHPSSELLGFASKYTrrAMRVAHVAAGQVFANWPTGRS 496
                  689************977755443389**********999998875 PP

  == domain 5  score: -0.5 bits;  conditional E-value: 0.43
  ANAPC4_WD40   3 wcptmDLiAlatedgellvfRln 25 
                  + p+   +A+++++g++l++ ln
   KOO22214.1 506 FAPHSGYMAIGNDQGKVLLYQLN 528
                  56677778888888888888887 PP

>> Cytochrom_D1  Cytochrome D1 heme domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.0   0.0     0.017        62      40      67 ..     274     301 ..     260     307 .. 0.90
   2 !   10.3   0.0   4.9e-05      0.18      11      95 ..     332     422 ..     328     434 .. 0.80

  Alignments for each domain:
  == domain 1  score: 2.0 bits;  conditional E-value: 0.017
                   EEE-TT.SSEEEEEETTSEEEEEESSSS CS
  Cytochrom_D1  40 srvfasdgRyvyvigRDgkvtliDLwak 67 
                   s  f+ dg  v+++gR  +  ++DL+  
    KOO22214.1 274 SATFSHDGAQVFMVGRAKHWAVFDLHSG 301
                   789**********************975 PP

  == domain 2  score: 10.3 bits;  conditional E-value: 4.9e-05
                   EGGGTEEEEEETTT-SEEEEEE.....-STTEEEEEE-TT.SSEEEEEETTSEEEEEESSSSSEEEEE..E-SSEEEEEEE--TTSEEEEEE CS
  Cytochrom_D1  11 erdagkvalldgdskeilavle.....tgyalHisrvfasdgRyvyvigRDgkvtliDLwakeivaev..kiGlnarsvavSqddryvivgn 95 
                   +++ g v l+ + sk+ +a+l+     +++a   s  f+ dg y+y+ g  ++v + DL ++  v++   + Gl   s+a S d+  +++g+
    KOO22214.1 332 LAESGAVLLVSAASKQLIATLQpagggSKFATQCS-CFSADGEYLYTSGEGSTVRVWDLRRRCCVHTWsdRGGLRVTSLAASPDGAQLAAGS 422
                   56789999999999999999975433334555554.67778******************999977765337799999999999998888875 PP

>> Ge1_WD40  WD40 region of Ge1, enhancer of mRNA-decapping protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.8   0.1    0.0016       5.8     191     241 ..     364     409 ..     347     411 .. 0.89
   2 ?    5.6   0.0    0.0018       6.5     191     229 ..     407     446 ..     405     449 .. 0.79
   3 ?   -0.7   0.0      0.15   5.3e+02     166     217 ..     471     528 ..     465     531 .. 0.68

  Alignments for each domain:
  == domain 1  score: 5.8 bits;  conditional E-value: 0.0016
    Ge1_WD40 191 veaafspdGtalatasedGevkffqvyledeeeprCLheWkPhdGkslssl 241
                  ++ fs+dG  l t+ e  +v+ + +     +++ C+h W   +G  ++sl
  KOO22214.1 364 QCSCFSADGEYLYTSGEGSTVRVWDL-----RRRCCVHTWSDRGGLRVTSL 409
                 5789******************9965.....78899*********999997 PP

  == domain 2  score: 5.6 bits;  conditional E-value: 0.0018
    Ge1_WD40 191 veaafspdGtalatasedGevkffqvyle.deeeprCLhe 229
                 ++ a spdG+ la+ s  G v +++      + +pr L e
  KOO22214.1 407 TSLAASPDGAQLAAGSDSGAVNLYRTADAqLQAKPRSLKE 446
                 56678*******************9865524567777766 PP

  == domain 3  score: -0.7 bits;  conditional E-value: 0.15
    Ge1_WD40 166 kygsgelsveeieegllkieehsl......iveaafspdGtalatasedGevkffqvy 217
                 ky++ +++v+++  g +  +  +       +  +af+p    +a+    G+v ++q++
  KOO22214.1 471 KYTRRAMRVAHVAAGQVFANWPTGrsplnyVQATAFAPHSGYMAIGNDQGKVLLYQLN 528
                 55555555555555554443322123344478889*********************87 PP

>> Pox_Ag35  Pox virus Ag35 surface protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   3.4   6.8e-05      0.24      37     122 ..       2     100 ..       1     125 [. 0.76

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 6.8e-05
    Pox_Ag35  37 ddifpeDieiPspkqekkkrattprkkpakkekkkkeeekeeaaeee.........eledseedee....nendedeseesvqaeeeksnesteddade 122
                 ddif  D +  s  + k +r   p+k ++k + k+k+++  e+++e           ++d +++e+    +++d+d  +  +qa++ +++  +edd+d+
  KOO22214.1   2 DDIFEIDASGDSDLRLKLARVPKPHKLTPKMTTKQKRRRLLEHEKELselvfqssaDVPDADDEEQpealDSDDDDALPVLPQASSLQAAWVDEDDEDQ 100
                 9***********************************9999999998899*****995555555544100134444444445555555554446666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (533 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       546  (0.0304535); expected 358.6 (0.02)
Passed bias filter:                      432  (0.024095); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.55u 0.30s 00:00:00.85 Elapsed: 00:00:00.44
# Mc/sec: 3635.72
//
Query:       KOO22215.1  [L=374]
Description: aldo keto reductase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.4e-25   90.2   0.0    3.6e-24   85.5   0.0    2.2  1  Aldo_ket_red  Aldo/keto reductase family


Domain annotation for each model (and alignments):
>> Aldo_ket_red  Aldo/keto reductase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   85.5   0.0     2e-28   3.6e-24      16     291 ..      53     353 ..      39     354 .. 0.82

  Alignments for each domain:
  == domain 1  score: 85.5 bits;  conditional E-value: 2e-28
                   -HHHHHHHHHHHHHTT--EEE--TT-TTTHHHHHHHHHHHH-TTTGGG-EEEEEE--SSSTTSSSS-HHHHHHHHHHHHHHHT-S-EEEEEE-S--T CS
  Aldo_ket_red  16 skeealellrraleaGinffDtAevYgkgqseellGealkksrkkreeviiatKvdlrdaeiksglskeniresleeslkrLgtdyvDllllHrpdp 112
                   s ++++++    l+ G + fD A +Y    + + +Gea+ +s+++r +v++++K+  +++  +  l  ++  ++  ++l +L+  y+Dlll+H+p++
    KOO22215.1  53 SGNQSFDAALLWLQLGGRRFDGALSY---GCDRGVGEAMRASGVNRSDVFLVSKI--GPGGLPLPLGYNETLQQAAQILAELNDTYIDLLLVHEPFS 144
                   5677888888899*************...99999*********************..**************************************** PP

                   TS-...........................HHHHHHHHHHHHHTTSEEEEEEES--HHHHHHHHHTTT--EEEEE-B-BTT..........-HHHHT CS
  Aldo_ket_red 113 slp..........................sieevldaleelvkeGkiraiGvSnfsveqlekakkkkkvkivavqveynll..........releee 173
                   ++p                           ++ +++a++el ++Gk+r+iGvSn++  +++++ + +   ++++q+++++            +  ++
    KOO22215.1 145 YWPdpsaaarapstdpacnltnpkystsgCRLSTWQAMVELWRAGKARSIGVSNYNSSHVDEIAAAGLPLPAVNQIQFSPHhgpthapctcGHSTSR 241
                   *****************************9*********************************55555559*************9999998555555 PP

                   THHHHHHH..TT-EEEEBSTTGG....GTTGTTTSS---SSSCCC-------TS-HHHHHHHHHHHHHHHH.TT--HHHHHHHHHTTSTT-SEEEE- CS
  Aldo_ket_red 174 gllelckk..kgvpliaysplgg....Glltgkyqseedkedkeprkdlkrdertsknldaaeelselake.hgvslaqlalryalsqpavgivipg 263
                    + ++c +    v   +  +l+     G+  + y + e k d+             + l++ ++l ++a+   gvs++q++l++   q  +++v p 
    KOO22215.1 242 PTPDACGNstAEVNESCSALLSYlaahGIVANGYSPFEGKADG-------------GSLLTEPALLAIAAAhPGVSPSQVVLNWQW-QRHGVVVNPT 324
                   5556666632233333333333222224444444444444433.............4568899999999883577***********.4666677799 PP

                   -SSHHHHHHHHGGG.G----HHHHHHHHH CS
  Aldo_ket_red 264 asnieqlednldal.elklseeevaelde 291
                   a++ e  + nld +  + ls+ e a+ld+
    KOO22215.1 325 ATTEEYQRLNLDFVdGFALSDAEAAQLDA 353
                   999999999999996669**999999986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (374 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       363  (0.0202465); expected 358.6 (0.02)
Passed bias filter:                      293  (0.0163422); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.26s 00:00:00.74 Elapsed: 00:00:00.43
# Mc/sec: 2584.12
//
Query:       KOO22216.1  [L=841]
Description: hypothetical protein Ctob_002308 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.1e-06   27.0   0.0    6.8e-06   26.3   0.0    1.3  1  VIT       Vault protein inter-alpha-trypsin domain
    4.4e-05   23.5   0.0    0.00012   22.0   0.0    1.7  1  VWA_3     von Willebrand factor type A domain


Domain annotation for each model (and alignments):
>> VIT  Vault protein inter-alpha-trypsin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.3   0.0   7.6e-10   6.8e-06      53     107 ..     150     204 ..     117     208 .. 0.90

  Alignments for each domain:
  == domain 1  score: 26.3 bits;  conditional E-value: 7.6e-10
         VIT  53 ggkvikgevkekeearkeyeeavaqgktaglleqeepdvftvsvgnippgeevtv 107
                 ++ ++  ev eke+a + ye+a ++ ++ + l+ +++d f++++ +ip+g++v +
  KOO22216.1 150 DKIQYNPEVMEKEQADASYEAAASSTTHSATLSDTAEDAFQIKLDKIPDGATVIF 204
                 5568999*****************9999999999999***************987 PP

>> VWA_3  von Willebrand factor type A domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.0   0.0   1.4e-08   0.00012       8     152 ..     447     603 ..     443     605 .. 0.81

  Alignments for each domain:
  == domain 1  score: 22.0 bits;  conditional E-value: 1.4e-08
       VWA_3   8 DvsssmsaenklvkdaLsvalrqLptndkiavllfgtkprplfpg.....sravsaaelqealqkikelelslgasnlegaLk...ealrqp....akp 94 
                 D+s++      ++ +aL+v l +L +++ i+  +++++  + f +     ++++ +a++ e    +++l+++l a ++ g  +   + ++ +    + p
  KOO22216.1 447 DTSKHLLR---AILNALPVHLNALRDQQLINMQPVRVR-LWSFDDrttglADVMLPADRTEPGNVVEQLQAQLRALRPGGCTNydsWSAELRacvaVNP 541
                 66666543...899***************999999996.33333345556999***************9999999999888887665555447788999 PP

       VWA_3  95 gevrsvilltDgssaqgeervsdlisrar.....ekirfhalglgsslsaamlqaLAeasgGt 152
                 ++  svil+tDg+ a + er++ +i++ r     + +++++lg g+ l++     LA+ +gG 
  KOO22216.1 542 ASLHSVILVTDGG-ATSRERFFGEIDAIRkqpgvGFFQVDCLGYGPWLDPSCVSWLARMTGGE 603
                 *************.6667799988887653445556*************************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (841 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       420  (0.0234257); expected 358.6 (0.02)
Passed bias filter:                      353  (0.0196888); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.65u 0.24s 00:00:00.89 Elapsed: 00:00:00.44
# Mc/sec: 5803.39
//
Query:       KOO22217.1  [L=723]
Description: hypothetical protein Ctob_014205 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (723 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       300  (0.0167327); expected 358.6 (0.02)
Passed bias filter:                      228  (0.0127168); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.56u 0.25s 00:00:00.81 Elapsed: 00:00:00.43
# Mc/sec: 5049.25
//
Query:       KOO22218.1  [L=885]
Description: hypothetical protein Ctob_014206 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
  ------ inclusion threshold ------
      0.059   13.2   0.0       0.12   12.2   0.0    1.5  1  Phage_integrase  Phage integrase family


Domain annotation for each model (and alignments):
>> Phage_integrase  Phage integrase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   6.7e-06      0.12     108     170 ..     703     768 ..     665     770 .. 0.81

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 6.7e-06
                      HHHHHHHHHHHHHHCT-S...SC--TTHHHHHHHHHHHHHCTSHHHHHHHHT-SSCCHHHHHHCCC CS
  Phage_integrase 108 rqtvrkafkraveeagie...kpltpHtlRhsfataLleagvdlrvvqkllGHssisttqiYthva 170
                      + +++k+f  + +    e    +l+ H++R  +a aLl ag+ ++ ++ +  +ss +  + Y+++a
       KOO22218.1 703 KAELSKFFDGLLRLVCSEeraRQLSVHSFRVWLACALLAAGATPEQIMLMVRWSSEAARKLYARLA 768
                      55555666665555444444589*********************************9999999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (885 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       390  (0.0217525); expected 358.6 (0.02)
Passed bias filter:                      265  (0.0147805); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.59u 0.28s 00:00:00.87 Elapsed: 00:00:00.41
# Mc/sec: 6435.28
//
Query:       KOO22219.1  [L=526]
Description: regulator of chromosome condensation [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.5e-69  229.7  11.5    1.9e-10   41.2   0.1    8.2  8  RCC1      Regulator of chromosome condensation (RCC1) repeat
    2.2e-39  132.5  29.2    3.2e-08   33.2   0.2    8.3  8  RCC1_2    Regulator of chromosome condensation (RCC1) repeat


Domain annotation for each model (and alignments):
>> RCC1  Regulator of chromosome condensation (RCC1) repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.2   0.1     1e-09   9.1e-06       2      50 .]      55     107 ..      54     107 .. 0.77
   2 !   40.5   0.0   3.4e-14     3e-10       1      50 []     110     158 ..     110     158 .. 0.95
   3 !   25.9   0.0   1.3e-09   1.2e-05       1      50 []     161     225 ..     161     225 .. 0.81
   4 !   20.5   0.0     6e-08   0.00054       5      33 ..     233     270 ..     231     281 .. 0.67
   5 !    5.1   0.0    0.0041        37      38      50 .]     337     349 ..     321     349 .. 0.86
   6 !   41.2   0.1   2.1e-14   1.9e-10       2      50 .]     353     409 ..     352     409 .. 0.83
   7 !   36.7   0.0   5.5e-13   4.9e-09       2      50 .]     413     462 ..     412     462 .. 0.90
   8 !   33.7   0.1   4.6e-12   4.2e-08       1      50 []     465     520 ..     465     520 .. 0.95

  Alignments for each domain:
  == domain 1  score: 26.2 bits;  conditional E-value: 1e-09
                 TEEEEEE--GGGTTSSSS-.....--EEEEEE-GGGTTS-EEEEEEETTEEEEE CS
        RCC1   2 GrVysWGrndyGqLGlgtt.....esvlvPtkveglsgnrvvkvacGddhtval 50 
                 G V+  G++d GqLGlg++     +s    +++++l+++r++ v+cG+ ht al
  KOO22219.1  55 GVVLVVGNGDCGQLGLGDEdedtrDSY-QLVRMPTLDAQRIKEVVCGGLHTGAL 107
                 999***************986433222.12455666666************986 PP

  == domain 2  score: 40.5 bits;  conditional E-value: 3.4e-14
                 TTEEEEEE--GGGTTSSSS---EEEEEE-GGGTTS.-EEEEEEETTEEEEE CS
        RCC1   1 dGrVysWGrndyGqLGlgttesvlvPtkveglsgn.rvvkvacGddhtval 50 
                 dGr+++WG+nd+  LG++ +es   P  veg     rv+k+++Gd+h +al
  KOO22219.1 110 DGRIWTWGCNDDEVLGRQGNESM--PAVVEGALVGkRVKKITAGDSHMAAL 158
                 9**********************..****9987668***********9997 PP

  == domain 3  score: 25.9 bits;  conditional E-value: 1.3e-09
                 TTEEEEEE..--GGGTTSSSS-...--E.............EEEEE-GGGTTS-EEEEEEETTEEEEE CS
        RCC1   1 dGrVysWG..rndyGqLGlgtt...esv.............lvPtkveglsgnrvvkvacGddhtval 50 
                 dG+VysWG  ++++G  G  ++   +               ++Pt+v++l+   +++ a+G+dht+a+
  KOO22219.1 161 DGQVYSWGtyKDSNGYIGYSPEairK-PegegypgelpwkaPTPTLVPNLP--SIKALASGADHTLAI 225
                 9******************6665431.1344555555666688********..9************98 PP

  == domain 4  score: 20.5 bits;  conditional E-value: 6e-08
                 EEEE--GGGTTSS......SS---E...EEEEE-GGGT CS
        RCC1   5 ysWGrndyGqLGl......gttesv...lvPtkvegls 33 
                 ++WG++++GqLG+      +t+ +    + P+ v+++s
  KOO22219.1 233 FGWGCGEKGQLGRelawekKTKFKYllpTEPVSVSLPS 270
                 89***********6665533334444433367777665 PP

  == domain 5  score: 5.1 bits;  conditional E-value: 0.0041
                 EEEEEETTEEEEE CS
        RCC1  38 vkvacGddhtval 50 
                  +v++G++h+++l
  KOO22219.1 337 RDVFAGAYHSFVL 349
                 68*********97 PP

  == domain 6  score: 41.2 bits;  conditional E-value: 2.1e-14
                 TEEEEEE--GGGTTSSSS-........--EEEEEE-GGGTTS-EEEEEEETTEEEEE CS
        RCC1   2 GrVysWGrndyGqLGlgtt........esvlvPtkveglsgnrvvkvacGddhtval 50 
                 G+Vys+G n++GqLGlg +        +s  +Pt+v+ l+g+++   a G +h++al
  KOO22219.1 353 GNVYSFGLNNMGQLGLGMRgakgdpepNSTGTPTLVTALEGKEIERLAGGEHHSLAL 409
                 9***************5554445454444477***********************97 PP

  == domain 7  score: 36.7 bits;  conditional E-value: 5.5e-13
                 TEEEEEE--GGGTTSSSS-.--EEEEEE-GGGTTS-EEEEEEETTEEEEE CS
        RCC1   2 GrVysWGrndyGqLGlgtt.esvlvPtkveglsgnrvvkvacGddhtval 50 
                 G+Vys+Gr+d++qLGlg+  +++ +P++v+ l+g  v kva  ++ +val
  KOO22219.1 413 GQVYSFGRGDNNQLGLGDGtDQEVTPRLVPALEGIAVRKVATTANSNVAL 462
                 9***************999656668*********9*****9998888886 PP

  == domain 8  score: 33.7 bits;  conditional E-value: 4.6e-12
                 TTEEEEEE--GGGTTSSSS---EEEEEE-GGGTTS......-EEEEEEETTEEEEE CS
        RCC1   1 dGrVysWGrndyGqLGlgttesvlvPtkveglsgn......rvvkvacGddhtval 50 
                 +G++y+WG++++GqL +g+  ++ vP +ve +++        + ++a+G++h v++
  KOO22219.1 465 SGDLYTWGFGEMGQLANGKGGDERVPALVEESKAGsaytglAALDAAAGGQHMVVV 520
                 59******************99999*****999999****************9975 PP

>> RCC1_2  Regulator of chromosome condensation (RCC1) repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    3.2   0.5    0.0088        79      16      30 .]      53      67 ..      52      67 .. 0.94
   2 !   23.2   0.5   4.8e-09   4.3e-05       1      28 [.      94     121 ..      94     122 .. 0.94
   3 !   32.1   0.0   7.8e-12     7e-08       1      29 [.     145     175 ..     145     175 .. 0.87
   4 !   21.7   0.2   1.4e-08   0.00013       1      30 []     212     242 ..     212     242 .. 0.97
   5 !   33.2   0.2   3.6e-12   3.2e-08       3      30 .]     338     365 ..     337     365 .. 0.96
   6 !   20.6   0.1   3.1e-08   0.00028       3      30 .]     398     425 ..     396     425 .. 0.86
   7 !   13.5   0.0   5.2e-06     0.046       1      30 []     449     478 ..     449     478 .. 0.87
   8 ?    0.5   0.1     0.064   5.7e+02       4      13 ..     510     519 ..     508     521 .. 0.83

  Alignments for each domain:
  == domain 1  score: 3.2 bits;  conditional E-value: 0.0088
      RCC1_2 16 edGeVlcWGsNsdGQ 30
                e+G Vl  G+ ++GQ
  KOO22219.1 53 ESGVVLVVGNGDCGQ 67
                7999**********9 PP

  == domain 2  score: 23.2 bits;  conditional E-value: 4.8e-09
      RCC1_2   1 VksvsaGdyHscaLtedGeVlcWGsNsd 28 
                 +k v +G+ H+ aLt dG++++WG+N+d
  KOO22219.1  94 IKEVVCGGLHTGALTLDGRIWTWGCNDD 121
                 67899*********************86 PP

  == domain 3  score: 32.1 bits;  conditional E-value: 7.8e-12
      RCC1_2   1 VksvsaGdyHscaLtedGeVlcWG..sNsdG 29 
                 Vk++ aGd+H  aLtedG V++WG   +s+G
  KOO22219.1 145 VKKITAGDSHMAALTEDGQVYSWGtyKDSNG 175
                 89**********************4436555 PP

  == domain 4  score: 21.7 bits;  conditional E-value: 1.4e-08
      RCC1_2   1 VksvsaGdyHscaLtedGe.VlcWGsNsdGQ 30 
                 +k++++G++H++a+++dG   ++WG+ + GQ
  KOO22219.1 212 IKALASGADHTLAISTDGYsFFGWGCGEKGQ 242
                 799***************************9 PP

  == domain 5  score: 33.2 bits;  conditional E-value: 3.6e-12
      RCC1_2   3 svsaGdyHscaLtedGeVlcWGsNsdGQ 30 
                 +v aG+yHs++Lt+ G+V+++G N+ GQ
  KOO22219.1 338 DVFAGAYHSFVLTAHGNVYSFGLNNMGQ 365
                 789************************9 PP

  == domain 6  score: 20.6 bits;  conditional E-value: 3.1e-08
      RCC1_2   3 svsaGdyHscaLtedGeVlcWGsNsdGQ 30 
                  ++ G  Hs+aL+++G V+++G+ ++ Q
  KOO22219.1 398 RLAGGEHHSLALSATGQVYSFGRGDNNQ 425
                 5788999***************987766 PP

  == domain 7  score: 13.5 bits;  conditional E-value: 5.2e-06
      RCC1_2   1 VksvsaGdyHscaLtedGeVlcWGsNsdGQ 30 
                 V++v+  ++  +aL ++G++++WG  + GQ
  KOO22219.1 449 VRKVATTANSNVALARSGDLYTWGFGEMGQ 478
                 567777788889************999998 PP

  == domain 8  score: 0.5 bits;  conditional E-value: 0.064
      RCC1_2   4 vsaGdyHsca 13 
                  +aG+ H ++
  KOO22219.1 510 AAAGGQHMVV 519
                 69*****998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (526 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       414  (0.0230911); expected 358.6 (0.02)
Passed bias filter:                      377  (0.0210274); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.51u 0.28s 00:00:00.79 Elapsed: 00:00:00.42
# Mc/sec: 3785.35
//
Query:       KOO22220.1  [L=874]
Description: importin subunit beta-1-like protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.2e-09   37.9   1.8    4.6e-09   36.1   1.3    2.4  2  IBN_N     Importin-beta N-terminal domain
    0.00018   21.5  23.7        1.1    9.7   0.0   11.4 14  HEAT      HEAT repeat
  ------ inclusion threshold ------
      0.013   15.6   0.0      0.061   13.5   0.0    2.1  1  CheX      Chemotaxis phosphatase CheX
       0.27   11.8  19.3        1.1    9.8   0.1    7.1  8  HEAT_EZ   HEAT-like repeat
        1.2    7.3   6.0        1.9    6.7   0.1    3.8  6  DRIM      Down-regulated in metastasis
        2.4    8.6  21.2       0.98    9.8   0.5    6.5  8  HEAT_2    HEAT repeats
        2.8    7.4   5.5        5.6    6.5   0.0    3.6  5  CLASP_N   CLASP N terminal


Domain annotation for each model (and alignments):
>> IBN_N  Importin-beta N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.1   1.3   1.8e-12   4.6e-09       1      73 [.      24     103 ..      24     104 .. 0.89
   2 ?   -3.0   0.0       2.8   7.1e+03      25      43 ..     186     205 ..     170     239 .. 0.64

  Alignments for each domain:
  == domain 1  score: 36.1 bits;  conditional E-value: 1.8e-12
                 HHHHHHHHHC..STCHHHHHHHHHHCTTSHHHHHHHHHHHHHHHHHHHGGSCCCHC......GSXHHHHHHHHHHHHHHHH CS
       IBN_N   1 AekqLkqlek..qpgflsallqilanseselevRqlAalyLknlitkhWsdeeekq......slpseekeqIrnnllnllg 73 
                 Ae+qL+ ++   +p  l++l + l+n+ +el +RqlA+++Lkn++t++ s    +q      ++++ e+ +I++ +l +l+
  KOO22220.1  24 AEQQLEAAKAsnLPLLLNLLARELSNEVKELTTRQLAGVLLKNCLTAK-SADLVQQrqaawlAISPAERHTIKTAVLGALA 103
                 8*****888877************************************.533333357889****************9987 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 2.8
                 TTSH.HHHHHHHHHHHHHHH CS
       IBN_N  25 sese.levRqlAalyLknli 43 
                 +e + + vR++++  ++n +
  KOO22220.1 186 KEEPnMDVRLAGVRAMTNAL 205
                 33343688888877777754 PP

>> HEAT  HEAT repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.0         1   2.6e+03       3      18 ..       8      22 ..       6      24 .. 0.80
   2 ?   -3.2   0.0       5.8   1.5e+04       2       9 ..      36      43 ..      36      57 .. 0.73
   3 ?   -2.2   0.1       2.9   7.5e+03      15      24 ..      77      86 ..      63      87 .. 0.68
   4 ?    3.6   0.0     0.038        97       5      27 ..      98     120 ..      95     121 .. 0.90
   5 ?   -3.0   0.0       5.3   1.4e+04      13      29 ..     146     162 ..     133     163 .. 0.73
   6 ?    0.9   0.0       0.3   7.6e+02      12      26 ..     189     203 ..     177     208 .. 0.85
   7 !    6.3   0.0    0.0054        14       1      30 [.     221     250 ..     221     251 .. 0.94
   8 ?    0.0   1.2      0.56   1.4e+03      18      28 ..     343     353 ..     342     356 .. 0.89
   9 ?    1.5   0.0      0.19   4.8e+02       1      29 [.     364     392 ..     364     393 .. 0.82
  10 !    9.7   0.0   0.00042       1.1      16      31 .]     423     438 ..     418     438 .. 0.91
  11 ?    0.3   0.1      0.46   1.2e+03      14      30 ..     477     493 ..     469     494 .. 0.83
  12 ?    1.1   0.1      0.24   6.2e+02       2      28 ..     611     637 ..     610     639 .. 0.90
  13 ?   -2.2   0.0         3   7.6e+03       7      29 ..     658     680 ..     652     682 .. 0.74
  14 ?   -0.3   0.0      0.73   1.9e+03      15      30 ..     812     827 ..     811     828 .. 0.86

  Alignments for each domain:
  == domain 1  score: -0.8 bits;  conditional E-value: 1
                HHHHHHHT-SSHHHHH CS
        HEAT  3 PlllkllsDpspeVRe 18
                P+ll   ++ +p VR+
  KOO22220.1  8 PILLA-AQSADPAVRQ 22
                67777.59*******7 PP

  == domain 2  score: -3.2 bits;  conditional E-value: 5.8
                HHHHHHHH CS
        HEAT  2 lPlllkll 9 
                lPlll+ll
  KOO22220.1 36 LPLLLNLL 43
                79999988 PP

  == domain 3  score: -2.2 bits;  conditional E-value: 2.9
                HHHHHHHHHH CS
        HEAT 15 eVReaAakaL 24
                ++R+aA +a+
  KOO22220.1 77 QQRQAAWLAI 86
                5799998887 PP

  == domain 4  score: 3.6 bits;  conditional E-value: 0.038
                 HHHHHT-SSHHHHHHHHHHHHHH CS
        HEAT   5 llkllsDpspeVReaAakaLgal 27 
                 +l +l +p  + R +Aa+ +ga+
  KOO22220.1  98 VLGALASPQQSARHTAAQVIGAI 120
                 6888999**************98 PP

  == domain 5  score: -3.0 bits;  conditional E-value: 5.3
                 SHHHHHHHHHHHHHHHH CS
        HEAT  13 speVReaAakaLgalae 29 
                 + +  +++++aLg ++e
  KOO22220.1 146 NDFLKQSSLEALGFVCE 162
                 56667889999997776 PP

  == domain 6  score: 0.9 bits;  conditional E-value: 0.3
                 SSHHHHHHHHHHHHH CS
        HEAT  12 pspeVReaAakaLga 26 
                 p+++VR a ++a+++
  KOO22220.1 189 PNMDVRLAGVRAMTN 203
                 89*******999876 PP

  == domain 7  score: 6.3 bits;  conditional E-value: 0.0054
                 HHHHHHHHHT-SSHHHHHHHHHHHHHHHHC CS
        HEAT   1 llPlllkllsDpspeVReaAakaLgalaev 30 
                 ++ +++++ + +  e+  aA ++++ +ae 
  KOO22220.1 221 IMQTVCEATQAEKQEIKVAAYECIVVIAEL 250
                 7999***********************985 PP

  == domain 8  score: 0.0 bits;  conditional E-value: 0.56
                 HHHHHHHHHHH CS
        HEAT  18 eaAakaLgala 28 
                 +aAa +L+++a
  KOO22220.1 343 SAAATCLAQIA 353
                 59********8 PP

  == domain 9  score: 1.5 bits;  conditional E-value: 0.19
                 HHHHHHHHHT-SSHHHHHHHHHHHHHHHH CS
        HEAT   1 llPlllkllsDpspeVReaAakaLgalae 29 
                 ++P+++ ++ + +++  eaA +a g ++e
  KOO22220.1 364 VIPFIQANIDSADWHRTEAATLAWGSVLE 392
                 68******999999988888888877665 PP

  == domain 10  score: 9.7 bits;  conditional E-value: 0.00042
                 HHHHHHHHHHHHHHCS CS
        HEAT  16 VReaAakaLgalaevl 31 
                 VR++Aa+++++++e++
  KOO22220.1 423 VRDTAAWTIARICEHH 438
                 9*************85 PP

  == domain 11  score: 0.3 bits;  conditional E-value: 0.46
                 HHHHHHHHHHHHHHHHC CS
        HEAT  14 peVReaAakaLgalaev 30 
                  +V e ++ aL alae+
  KOO22220.1 477 TRVAEKVCTALYALAEQ 493
                 578899999****9986 PP

  == domain 12  score: 1.1 bits;  conditional E-value: 0.24
                 HHHHHHHHT-SSHHHHHHHHHHHHHHH CS
        HEAT   2 lPlllkllsDpspeVReaAakaLgala 28 
                 ++l+l+   + +++V e A++a+g +a
  KOO22220.1 611 MNLCLQVFASRNSSVHEEALLAVGSVA 637
                 7899999999*************9887 PP

  == domain 13  score: -2.2 bits;  conditional E-value: 3
                 HHHT-SSHHHHHHHHHHHHHHHH CS
        HEAT   7 kllsDpspeVReaAakaLgalae 29 
                  l + ++  V   A+  +g++++
  KOO22220.1 658 GLSNYEEFMVCNVAIGVVGDICR 680
                 444778888999999999*9997 PP

  == domain 14  score: -0.3 bits;  conditional E-value: 0.73
                 HHHHHHHHHHHHHHHC CS
        HEAT  15 eVReaAakaLgalaev 30 
                 +V  aA+  +g+la+ 
  KOO22220.1 812 SVVHAAVGLIGDLAQT 827
                 5888*********986 PP

>> CheX  Chemotaxis phosphatase CheX
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.0   2.4e-05     0.061      23      78 ..     508     566 ..     506     579 .. 0.87

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 2.4e-05
        CheX  23 lalkiasa.l..gedeeeieedvndavgEltNmiaGnaksklgeevklspPlvisgkel 78 
                 l++++a+a l  +e++++ e  ++  + E +Nm++ na ++++ +v   +Plvis  e 
  KOO22220.1 508 LFVTLAKAlLacTERHDAGENNLRVSAYEALNMVITNAAKDTHVSVGQLLPLVISRLEG 566
                 6778899855777888889***********************************98765 PP

>> HEAT_EZ  HEAT-like repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.2       1.7   4.3e+03      16      37 ..      22      43 ..      12      57 .. 0.75
   2 ?    4.6   0.7     0.019        49       4      55 .]      78     120 ..      76     120 .. 0.83
   3 ?    3.2   0.0     0.053   1.4e+02       3      52 ..     149     201 ..     147     203 .. 0.81
   4 ?   -3.0   0.0       4.5   1.2e+04      19      37 ..     306     324 ..     303     335 .. 0.70
   5 ?    9.8   0.1   0.00044       1.1       6      55 .]     382     434 ..     378     434 .. 0.78
   6 ?   -2.5   0.1       3.1   8.1e+03      40      55 .]     475     490 ..     468     490 .. 0.75
   7 ?    1.4   0.0      0.19     5e+02       3      35 ..     625     653 ..     623     659 .. 0.76
   8 ?   -1.0   0.0       1.1   2.8e+03      18      39 ..     682     703 ..     667     707 .. 0.67

  Alignments for each domain:
  == domain 1  score: -1.6 bits;  conditional E-value: 1.7
     HEAT_EZ 16 ggepellqplvpeilpaLlalL 37
                + + ++l+ +    lp+Ll+lL
  KOO22220.1 22 QPAEQQLEAAKASNLPLLLNLL 43
                5666777778888999999998 PP

  == domain 2  score: 4.6 bits;  conditional E-value: 0.019
     HEAT_EZ   4 RraAaw.aLGrlaggepellqplvpeilpaLlalLnddsd.eVRaaAagaLgnl 55 
                 +r Aaw a++      p   ++  +++l aL+     +++ + R +Aa  +g++
  KOO22220.1  78 QRQAAWlAIS------PAERHTIKTAVLGALA-----SPQqSARHTAAQVIGAI 120
                 7889998995......446788889999****.....999788******99986 PP

  == domain 3  score: 3.2 bits;  conditional E-value: 0.053
     HEAT_EZ   3 vRraAawaLGr.laggepellqplvpeilpaLlalLnddsd..eVRaaAagaL 52 
                 ++ + + aLG  +++  p  l+p+   il a +++++ +++  +VR a ++a 
  KOO22220.1 149 LKQSSLEALGFvCEEIDPAVLEPQANLILTAVVSGMRKEEPnmDVRLAGVRAM 201
                 56677778886677778888****************88888789999999885 PP

  == domain 4  score: -3.0 bits;  conditional E-value: 4.5
     HEAT_EZ  19 pellqplvpeilpaLlalL 37 
                 p   + +v++ + +L+ lL
  KOO22220.1 306 PGPSHNFVKQGMGQLVGLL 324
                 5555677888888888665 PP

  == domain 5  score: 9.8 bits;  conditional E-value: 0.00044
     HEAT_EZ   6 aAawaLGrlaggepel.lqplvpeilpaLlalLnddsd..eVRaaAagaLgnl 55 
                 aA +a G++++g ++l lqp+   +l  +++l  ++    +VR +Aa++++++
  KOO22220.1 382 AATLAWGSVLEGPSDLaLQPFMVPALEKMISLVGTPTTalPVRDTAAWTIARI 434
                 566677884444444449999999999999***999998888********997 PP

  == domain 6  score: -2.5 bits;  conditional E-value: 3.1
     HEAT_EZ  40 dsdeVRaaAagaLgnl 55 
                 d+ +V ++++ aL +l
  KOO22220.1 475 DHTRVAEKVCTALYAL 490
                 5779999999999875 PP

  == domain 7  score: 1.4 bits;  conditional E-value: 0.19
     HEAT_EZ   3 vRraAawaLGrlaggepellqplvpeilpaLla 35 
                 v + A++a+G++a   +++ +    + +p + +
  KOO22220.1 625 VHEEALLAVGSVATATGRAFE----KYMPHFRP 653
                 7899******99988888777....55555555 PP

  == domain 8  score: -1.0 bits;  conditional E-value: 1.1
     HEAT_EZ  18 epellqplvpeilpaLlalLnd 39 
                    ++ p+ +e++ +Ll+ L++
  KOO22220.1 682 LEKQVMPYCDELVHLLLRNLQN 703
                 4455777888999999987766 PP

>> DRIM  Down-regulated in metastasis
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.1      0.13   3.4e+02     555     600 ..      34      87 ..      18     118 .. 0.63
   2 ?   -2.1   0.1      0.35     9e+02     525     589 ..     183     250 ..     179     278 .. 0.71
   3 ?   -3.0   0.0      0.63   1.6e+03     208     236 ..     254     280 ..     245     306 .. 0.71
   4 ?   -1.1   0.0      0.17   4.4e+02     406     440 ..     478     513 ..     340     563 .. 0.51
   5 ?    6.7   0.1   0.00075       1.9     193     233 ..     587     627 ..     553     652 .. 0.79
   6 ?   -0.8   0.0      0.14   3.6e+02     198     226 ..     675     703 ..     668     761 .. 0.70

  Alignments for each domain:
  == domain 1  score: -0.8 bits;  conditional E-value: 0.13
        DRIM 555 qwlpllhnclf..firdeeelsirsnAsellkrfieaaaskseeeps......k 600
                   lpll n+l   + ++ +el+ r+ A  llk +++a ++   ++++      +
  KOO22220.1  34 SNLPLLLNLLAreLSNEVKELTTRQLAGVLLKNCLTAKSADLVQQRQaawlaiS 87 
                 446667776665566777888888888888888877766666665444455442 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 0.35
        DRIM 525 krrldepDfdrRlsAFkkinee...kyksltleqwlpllhnclffirdeeelsirsnAsellkrfiea 589
                   r +ep+ d Rl++ ++ ++     +k++++e  + ++ + ++   + e   i+ +A e++  + e 
  KOO22220.1 183 GMRKEEPNMDVRLAGVRAMTNAlefVEKNFEVEVERNIIMQTVCEATQAEKQEIKVAAYECIVVIAEL 250
                 56778888888888888888886553477888888888888888777777777777777777655554 PP

  == domain 3  score: -3.0 bits;  conditional E-value: 0.63
        DRIM 208 klapflpkllklllyclaaaqrrlkssse 236
                 kl  ++p l +l+l+ l+ a ++  +s+e
  KOO22220.1 254 KLPAYMPALYQLTLAALQKATAD--ESEE 280
                 56899999999999999999833..3322 PP

  == domain 4  score: -1.1 bits;  conditional E-value: 0.17
        DRIM 406 ellereleiLsrlaplvedse.qassLldlllplLr 440
                 +++e+  + L  la+ ved+  + s+ l+ l+  L 
  KOO22220.1 478 RVAEKVCTALYALAEQVEDERnNPSNRLSGLFVTLA 513
                 444444444444444444442122222222222222 PP

  == domain 5  score: 6.7 bits;  conditional E-value: 0.00075
        DRIM 193 gflnlledvlkelgsklapflpkllklllyclaaaqrrlks 233
                  + + l+ + ++lg + ap+++++++l l ++a+ ++ +++
  KOO22220.1 587 LLCATLQVITQKLGPQAAPHADQMMNLCLQVFASRNSSVHE 627
                 45678889999999999999999999999877777644443 PP

  == domain 6  score: -0.8 bits;  conditional E-value: 0.14
        DRIM 198 ledvlkelgsklapflpkllklllyclaa 226
                 + d+ + l +++ p+ ++l++lll  l++
  KOO22220.1 675 VGDICRALEKQVMPYCDELVHLLLRNLQN 703
                 66777777777777777777777765554 PP

>> HEAT_2  HEAT repeats
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.1   0.7     0.025        63      39      87 ..      12      59 ..       5      60 .. 0.83
   2 ?    9.8   0.5   0.00038      0.98      16      87 ..      78     157 ..      62     158 .. 0.64
   3 ?    2.2   0.0     0.093   2.4e+02      11      56 ..     144     202 ..     133     217 .. 0.73
   4 ?   -0.0   0.1      0.47   1.2e+03      63      84 ..     266     287 ..     189     289 .. 0.67
   5 ?    2.8   0.1     0.061   1.6e+02      33      86 ..     321     386 ..     313     388 .. 0.62
   6 ?   -1.5   0.0       1.3   3.4e+03      33      59 ..     407     435 ..     397     443 .. 0.69
   7 ?   -1.7   0.1       1.6     4e+03      53      59 ..     485     491 ..     468     549 .. 0.50
   8 ?   -2.7   0.0       3.3   8.4e+03      31      59 ..     609     637 ..     591     645 .. 0.67

  Alignments for each domain:
  == domain 1  score: 4.1 bits;  conditional E-value: 0.025
      HEAT_2 39 llededpavRraaaeaLgaigdpealpaLkellddddddvvReaAaeaL 87
                +++++dpavR+ a + L a + + +lp+L+ ll+++ + +v+e +++ L
  KOO22220.1 12 AAQSADPAVRQPAEQQLEAAKAS-NLPLLLNLLARELSNEVKELTTRQL 59
                56899999999999999999986.8999999999999999998777666 PP

  == domain 2  score: 9.8 bits;  conditional E-value: 0.00038
      HEAT_2  16 vrraairaLgrignpealpaLvellededpavRraaaeaLgaig....d....pealpaLkellddddddvvReaAaeaL 87 
                  r+aa  a+      ++  a++ +l ++    R++aa+ +gaig         pe ++ L++  +   +d+ +++++eaL
  KOO22220.1  78 QRQAAWLAISPAERHTIKTAVLGALASPQQSARHTAAQVIGAIGvielPhaqwPELIQGLADNTTASGNDFLKQSSLEAL 157
                 24455555556777788899999********************9776532234445555555555555666666666666 PP

  == domain 3  score: 2.2 bits;  conditional E-value: 0.093
      HEAT_2  11 dpdpevrraairaLg....rignp....ea...lpaLvell..ededpavRraaaeaLg 56 
                 + ++ +++  ++aLg    +i++     +a   l a+v+ +  e ++++vR a ++a+ 
  KOO22220.1 144 SGNDFLKQSSLEALGfvceEIDPAvlepQAnliLTAVVSGMrkEEPNMDVRLAGVRAMT 202
                 6677788888999997776333323333446669999999965567889****999986 PP

  == domain 4  score: -0.0 bits;  conditional E-value: 0.47
      HEAT_2  63 alpaLkellddddddvvReaAa 84 
                 +l+aL+++ +d+++++v  +A+
  KOO22220.1 266 TLAALQKATADESEEDVGKQAI 287
                 5677777777777777766665 PP

  == domain 5  score: 2.8 bits;  conditional E-value: 0.061
      HEAT_2  33 lpaLvell..ededpa....vRraaaeaLgaig...dpe....alpaLkellddddddvvReaAaea 86 
                 + +L+e++  +ded++       aaa+ L++i+   +++    ++p+ ++  d+  d+ + eaA+ a
  KOO22220.1 321 VGLLLEAMckQDEDEDggftLASAAATCLAQIAltvHDDvvghVIPFIQANIDSA-DWHRTEAATLA 386
                 5667777766666655455588899999999974332334444667777766554.45556666666 PP

  == domain 6  score: -1.5 bits;  conditional E-value: 1.3
      HEAT_2  33 lpaLvellededpa..vRraaaeaLgaig 59 
                 l+ +++l+ ++ +a  vR +aa+++++i 
  KOO22220.1 407 LEKMISLVGTPTTAlpVRDTAAWTIARIC 435
                 56667777665543348888888888774 PP

  == domain 7  score: -1.7 bits;  conditional E-value: 1.6
      HEAT_2  53 eaLgaig 59 
                 +aL a++
  KOO22220.1 485 TALYALA 491
                 3333322 PP

  == domain 8  score: -2.7 bits;  conditional E-value: 3.3
      HEAT_2  31 ealpaLvellededpavRraaaeaLgaig 59 
                 + +++++++  + ++ v ++a  a g ++
  KOO22220.1 609 QMMNLCLQVFASRNSSVHEEALLAVGSVA 637
                 44777777777888888888888887665 PP

>> CLASP_N  CLASP N terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.8   0.2      0.12     3e+02      65     108 ..      28      72 ..      24      86 .. 0.86
   2 ?   -3.7   0.0       2.9   7.3e+03      93     121 ..     219     247 ..     209     249 .. 0.79
   3 ?   -3.9   0.0       3.3   8.4e+03     110     143 ..     423     455 ..     410     458 .. 0.79
   4 ?    6.5   0.0    0.0022       5.6      66     124 ..     581     639 ..     570     650 .. 0.87
   5 ?   -1.2   0.0      0.49   1.2e+03      73     104 ..     671     702 ..     666     704 .. 0.85

  Alignments for each domain:
  == domain 1  score: 0.8 bits;  conditional E-value: 0.12
     CLASP_N  65 Lrttlsstgchllkelaiqlkeqldpm.veillptLlkllgdtKk 108
                 L  +  s++ +ll  la++l ++++++  ++l  +Llk +   K 
  KOO22220.1  28 LEAAKASNLPLLLNLLARELSNEVKELtTRQLAGVLLKNCLTAKS 72 
                 66677899999************99998999*******9988875 PP

  == domain 2  score: -3.7 bits;  conditional E-value: 2.9
     CLASP_N  93 eillptLlkllgdtKkiisqnanqalaal 121
                 +i+++t  +  ++ K+ i  +a  ++  +
  KOO22220.1 219 NIIMQTVCEATQAEKQEIKVAAYECIVVI 247
                 57899999999999999988888888766 PP

  == domain 3  score: -3.9 bits;  conditional E-value: 3.3
     CLASP_N 110 isqnanqalaallsnasfspri.lqvlsvalqdKn 143
                 ++ +a+ ++a ++++ +    i  q+  v l + +
  KOO22220.1 423 VRDTAAWTIARICEHHT--ASIqPQHWHVMLREGS 455
                 67889999999999998..7777888877777655 PP

  == domain 4  score: 6.5 bits;  conditional E-value: 0.0022
     CLASP_N  66 rttlsstgchllkelaiqlkeqldpmveillptLlkllgdtKkiisqnanqalaallsn 124
                  t l   +c +l+ +++ l++q +p ++++++++l++ ++    + ++a  a+ ++ ++
  KOO22220.1 581 QTELQGLLCATLQVITQKLGPQAAPHADQMMNLCLQVFASRNSSVHEEALLAVGSVATA 639
                 57778889********************************9999999999998776655 PP

  == domain 5  score: -1.2 bits;  conditional E-value: 0.49
     CLASP_N  73 gchllkelaiqlkeqldpmveillptLlkllg 104
                 ++ ++ ++++ l++q+ p+++ l+ +Ll+ l+
  KOO22220.1 671 AIGVVGDICRALEKQVMPYCDELVHLLLRNLQ 702
                 66778899*******************98775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (874 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       442  (0.0246528); expected 358.6 (0.02)
Passed bias filter:                      357  (0.0199119); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.71u 0.29s 00:00:01.00 Elapsed: 00:00:00.46
# Mc/sec: 5744.53
//
Query:       KOO22221.1  [L=389]
Description: hypothetical protein Ctob_006629 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    0.00012   22.6   0.0    0.00031   21.3   0.0    1.7  1  OTU       OTU-like cysteine protease


Domain annotation for each model (and alignments):
>> OTU  OTU-like cysteine protease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.3   0.0   1.7e-08   0.00031       3      89 ..      76     162 ..      74     194 .. 0.66

  Alignments for each domain:
  == domain 1  score: 21.3 bits;  conditional E-value: 1.7e-08
                 SS-HHHHHHHHCCCSS.SHCCHHHHHHHHHCHHHHHH......TSSHHCCHHHHCCHHH....HHHHTTSTTHHHHHHHHHHHHHHCTS-EEEETTS CS
         OTU   3 DGnCLlravsqqlwgvsdelrkakvseLreklaeylr......ehseelelfleeeeeg....ylkeiektaawggeleifalahiLrrpIiVlkse 89 
                 DG CL+ +   q +      +k     +re+l++ l+       + + l+ ++ +e+ +    y+  ++++  wgg +e+ a++++ rr + V ++ 
  KOO22221.1  76 DGACLFSSLGGQHA------KK----LVREALGDWLKknphfpIYTTTLAQYVMGETGEtwsvYCARMQSDRTWGGLPELVAASQVWRRVVRVFENI 162
                 89999999888875......33....2333333333333224434444444444443335666******************************5443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (389 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       872  (0.0486363); expected 358.6 (0.02)
Passed bias filter:                      485  (0.0270511); expected 358.6 (0.02)
Passed Vit filter:                        49  (0.002733); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.50u 0.21s 00:00:00.71 Elapsed: 00:00:00.39
# Mc/sec: 2980.36
//
Query:       KOO22222.1  [L=313]
Description: hypothetical protein Ctob_005414 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (313 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1085  (0.0605165); expected 358.6 (0.02)
Passed bias filter:                      537  (0.0299515); expected 358.6 (0.02)
Passed Vit filter:                        55  (0.00306766); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.47u 0.25s 00:00:00.72 Elapsed: 00:00:00.40
# Mc/sec: 2371.46
//
Query:       KOO22223.1  [L=419]
Description: dioxygenase-like protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.2e-06   28.4   0.0    2.1e-05   25.2   0.0    2.3  2  DIOX_N        non-haem dioxygenase in morphine synthesis N-te
  ------ inclusion threshold ------
      0.015   15.8   0.0      0.023   15.2   0.0    1.3  1  2OG-FeII_Oxy  2OG-Fe(II) oxygenase superfamily


Domain annotation for each model (and alignments):
>> DIOX_N  non-haem dioxygenase in morphine synthesis N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.2   0.0      0.14   1.2e+03      33      52 ..       4      23 ..       3      25 .. 0.90
   2 !   25.2   0.0   2.4e-09   2.1e-05       2      77 ..      67     147 ..      66     171 .. 0.85

  Alignments for each domain:
  == domain 1  score: 0.2 bits;  conditional E-value: 0.14
      DIOX_N 33 yvvnhgvpeelidelfeaar 52
                y+  hgv+e+l++++ e++r
  KOO22223.1  4 YIAAHGVQEALAAAVCEVLR 23
                8999*********9999877 PP

  == domain 2  score: 25.2 bits;  conditional E-value: 2.4e-09
      DIOX_N   2 Pvidlspl...sddedraavaeqlreAcrevGffyvvnhgvpeelidelfeaareFFalPeeeKeklaksp..sfrGysrl 77 
                 Pvid+s++    ++ + + ++++l e ++ +G+ ++    v+e++  + +++++++Fa+P+e K++  +++   + G +++
  KOO22223.1  67 PVIDVSSWlndPSSVEAQTACKALAESLKATGIALLRDSRVSEADEVAFLDLMEDYFAQPDELKMADVRKEfhYQVGATPS 147
                 9*****997533334478999********************************************9977765344566655 PP

>> 2OG-FeII_Oxy  2OG-Fe(II) oxygenase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.2   0.0   2.6e-06     0.023      18      99 ..     272     368 ..     222     370 .. 0.78

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 2.6e-06
                   -.---EEEEEESSSEEEEEEE-TT---E.EEETEEEE----TTEEEEEE-HHHHHHTTS-S----EEE-..---GTGS.............EEEEEE CS
  2OG-FeII_Oxy  18 v.ilglgahtdaslltillqddvgglev.fkdgkwlrvppvdnslivniGdallflsngryksvlHrVl..pvneger.............Rvsiay 97 
                   v ++  g h d +llti   +   gl v ++dg+  rv  ++++l+v++G +++ l++g+    +H+V   p+++  +             R+s+++
    KOO22223.1 272 VnTILAGFHNDLNLLTIHGKSRYPGLHVwLRDGTKRRVAIPNGCLLVQAGMQMERLTGGQVIAGMHEVVvlPETV--EvaerraaagrppwRISSTL 366
                   243335889999999987777799999955888889999999**************************8323222..24465777777777777777 PP

                   EE CS
  2OG-FeII_Oxy  98 fi 99 
                   f 
    KOO22223.1 367 FA 368
                   76 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (419 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       363  (0.0202465); expected 358.6 (0.02)
Passed bias filter:                      342  (0.0190752); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.47u 0.28s 00:00:00.75 Elapsed: 00:00:00.43
# Mc/sec: 2900.83
//
Query:       KOO22224.1  [L=542]
Description: hypothetical protein Ctob_005412 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.9e-27   94.9   0.0    1.9e-16   60.0   0.0    2.7  3  Glyco_transf_90  Glycosyl transferase family 90
  ------ inclusion threshold ------
      0.077   13.4   0.0       0.17   12.3   0.0    1.5  1  Glyco_trans_1_2  Glycosyl transferases group 1


Domain annotation for each model (and alignments):
>> Glyco_transf_90  Glycosyl transferase family 90
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.0     0.074   6.6e+02      17      33 ..      19      35 ..      15      43 .. 0.85
   2 !   31.3   0.0   1.1e-11   9.7e-08      35     128 ..      57     150 ..      50     176 .. 0.81
   3 !   60.0   0.0   2.1e-20   1.9e-16     209     342 ..     184     316 ..     177     333 .. 0.92

  Alignments for each domain:
  == domain 1  score: -1.1 bits;  conditional E-value: 0.074
  Glyco_transf_90 17 Lkpwretgitreavera 33
                     L+pwr++g+++e v+ a
       KOO22224.1 19 LAPWRTAGVSQEQVDAA 35
                     89************987 PP

  == domain 2  score: 31.3 bits;  conditional E-value: 1.1e-11
  Glyco_transf_90  35 rkalfrlviingrvyveky.kksvqtrdvftiwgilqLlrkypg..klpDlelmfncdDrPvvkkkdyrgkeaappPlfsycgdeetlDivfPd 125
                      r+ l+r+ i+ gr+y  +  ++   +r    +  il L+r   +  +lpD++l++ ++DrP+v +++    + +pp +f y ++ ++  + fP 
       KOO22224.1  57 RNRLLRVNILGGRLYYVSCvGQRSTAR-KVRQRAILALIRATLAvhELPDVDLVLSLSDRPTVPRHAVM--DGSPPLVFGYVTTAWHWSVPFPY 147
                      677899********8666414444455.678899999*998754339*******************987..5678889***************8 PP

  Glyco_transf_90 126 wsf 128
                       +f
       KOO22224.1 148 ATF 150
                      777 PP

  == domain 3  score: 60.0 bits;  conditional E-value: 2.1e-20
  Glyco_transf_90 209 sledqckhkYkiyieGvaasvsekyilacdslvllvkpeyydffsreLkplehYvPikskdklrdlkeavdwgnahdekaqeiaeegseFiree 302
                       l ++ ++ Y i ++G   s ++  +l+ + +vl+ +++++ +++  L + eh vP+++  +l+ l   ++ +++++++  ++a ++++F++  
       KOO22224.1 184 TLREHAQFAYLIHVDGNGFSGRLEELLSLGGVVLKEESPFESWYYPLLRAHEHVVPLAR--NLSTLCDSLRALREEPRRTAALAAAAQRFATAF 275
                      58899*****************************************************9..999999999999********************* PP

  Glyco_transf_90 303 LkmddvydYmfhLlteYakllkykptvpkgavevc.aesla 342
                      L+ ++v  Y   L++ Ya l++++p++++ a+e   ae+++
       KOO22224.1 276 LAPESVIGYVAALVRGYATLQRFRPRRHPMAKEWAdAETMV 316
                      ****************************9999864256665 PP

>> Glyco_trans_1_2  Glycosyl transferases group 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   1.9e-05      0.17       9      78 ..     200     273 ..     178     282 .. 0.88

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 1.9e-05
  Glyco_trans_1_2   9 espnlrlfEaaacGafaltdda...egleelftpgkevilfe.dleelaekiryllanpeerraiaeaarervl 78 
                      +++++rl E +  G+++l +++   + +  l++  ++v+  + +l  l + +r+l ++p + +a+a+aa++++ 
       KOO22224.1 200 NGFSGRLEELLSLGGVVLKEESpfeSWYYPLLRAHEHVVPLArNLSTLCDSLRALREEPRRTAALAAAAQRFAT 273
                      8999****************999*9999999999999999999***************************9865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (542 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       371  (0.0206927); expected 358.6 (0.02)
Passed bias filter:                      239  (0.0133304); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.53u 0.29s 00:00:00.82 Elapsed: 00:00:00.47
# Mc/sec: 3492.68
//
Query:       KOO22225.1  [L=145]
Description: hypothetical protein Ctob_005410 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (145 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       216  (0.0120475); expected 358.6 (0.02)
Passed bias filter:                      195  (0.0108762); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.27s 00:00:00.63 Elapsed: 00:00:00.42
# Mc/sec: 1029.68
//
Query:       KOO22226.1  [L=66]
Description: hypothetical protein Ctob_005411 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.021   15.0   0.0      0.033   14.4   0.0    1.3  1  E1_4HB     Ubiquitin-activating enzyme E1 four-helix bundle
      0.043   14.1   0.1       0.05   13.9   0.1    1.1  1  TetR_C_11  Tetracyclin repressor-like, C-terminal domain


Domain annotation for each model (and alignments):
>> E1_4HB  Ubiquitin-activating enzyme E1 four-helix bundle
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.4   0.0   3.6e-06     0.033      40      64 ..      28      52 ..      23      57 .. 0.85

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 3.6e-06
                HHHHHHCTT----TT-HHHHHHHHH CS
      E1_4HB 40 LhaFeeehgrlPrplneedaekvva 64
                L  +  ehgrlP+p    da++v +
  KOO22226.1 28 LLGYVREHGRLPQPQRGLDADAVTT 52
                7789*****************9976 PP

>> TetR_C_11  Tetracyclin repressor-like, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.1   5.6e-06      0.05      37      76 ..       2      41 ..       1      56 [. 0.83

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 5.6e-06
   TetR_C_11 37 eaqrdpelaealrerlleprraalravlrrAvarGelrad 76
                ea ++pe a+ +re + +pr +al+++l   ++ G l++ 
  KOO22226.1  2 EANAHPEYATGFRECVEAPRGRALHELLGYVREHGRLPQP 41
                8899**********99********************9962 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (66 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       160  (0.00892409); expected 358.6 (0.02)
Passed bias filter:                      135  (0.0075297); expected 358.6 (0.02)
Passed Vit filter:                        11  (0.000613531); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.34u 0.25s 00:00:00.59 Elapsed: 00:00:00.42
# Mc/sec: 477.22
//
Query:       KOO22227.1  [L=75]
Description: hypothetical protein Ctob_005416 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (75 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       174  (0.00970495); expected 358.6 (0.02)
Passed bias filter:                      154  (0.00858944); expected 358.6 (0.02)
Passed Vit filter:                        12  (0.000669307); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.26s 00:00:00.61 Elapsed: 00:00:00.40
# Mc/sec: 564.92
//
Query:       KOO22228.1  [L=1205]
Description: hypothetical protein Ctob_005404 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
      2e-17   63.1  38.7      0.035   14.3   0.0   12.6 12  AP2             AP2 domain
    1.1e-05   25.6   5.8    2.5e-05   24.5   5.8    1.6  1  zf-RING_2       Ring finger domain
    0.00063   19.9   3.8     0.0028   17.8   2.5    3.0  2  FANCL_C         FANCL C-terminal domain
     0.0038   17.5   4.5     0.0085   16.4   4.5    1.6  1  zf-rbx1         RING-H2 zinc finger domain
  ------ inclusion threshold ------
       0.16   11.9   5.6       0.32   11.0   5.6    1.5  1  zf-RING_5       zinc-RING finger domain
        2.8    8.1   5.6        5.3    7.2   5.6    1.5  1  RINGv           RING-variant domain
        3.5    8.0  11.7         17    5.8   0.1    6.1  7  Transposase_20  Transposase IS116/IS110/IS902 family
        5.9    6.8   8.6         30    4.6   8.6    2.1  1  zf-C3HC4_3      Zinc finger, C3HC4 type (RING finger)


Domain annotation for each model (and alignments):
>> AP2  AP2 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.1   0.0   8.1e-05      0.18       2      42 ..      26      62 ..      25      67 .. 0.90
   2 !   14.3   0.0   1.6e-05     0.035       3      44 ..     114     150 ..     113     153 .. 0.93
   3 !   12.3   0.0   6.8e-05      0.15       1      42 [.     198     234 ..     198     240 .. 0.91
   4 ?    3.7   0.5     0.033        74       3      42 ..     286     320 ..     284     324 .. 0.76
   5 ?    1.9   0.0      0.12   2.8e+02       1      42 [.     370     406 ..     370     412 .. 0.77
   6 !   11.3   0.4   0.00014      0.31       1      44 [.     456     494 ..     456     498 .. 0.87
   7 !    7.0   0.1     0.003       6.7       2      47 ..     543     585 ..     542     586 .. 0.81
   8 ?    1.0   0.1      0.24   5.3e+02      30      44 ..     653     668 ..     630     672 .. 0.65
   9 ?   -3.9   0.2       7.5   1.7e+04      33      41 ..     723     731 ..     722     731 .. 0.90
  10 !    5.6   0.4    0.0085        19       1      47 [.     802     843 ..     802     850 .. 0.85
  11 ?    4.5   0.1     0.018        40       2      42 ..     892     927 ..     891     932 .. 0.83
  12 !    7.2   0.1    0.0026       5.8      11      42 ..     985    1013 ..     979    1018 .. 0.87

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 8.1e-05
         AP2  2 kikGVrydkkrgrWvAewskngkrkkkrfsvgkyGf.eeAkr 42
                ++kGV++ +  + ++A+ ++ng     + ++gk+ + eeA++
  KOO22228.1 26 GFKGVCKKH-GKYYEAQIRENG----MKLHLGKFPSpEEAAL 62
                799**9999.788********9....**************97 PP

  == domain 2  score: 14.3 bits;  conditional E-value: 1.6e-05
         AP2   3 ikGVrydkkrgrWvAewskngkrkkkrfsvgkyGf.eeAkraA 44 
                 ++GVr +   g++ A+ ++ng     ++++g++ + eeA++ +
  KOO22228.1 114 FRGVRMNQ--GKYKAQITENG----MQIHLGTFATpEEAALSY 150
                 79999998..**********9....***************977 PP

  == domain 3  score: 12.3 bits;  conditional E-value: 6.8e-05
         AP2   1 pkikGVrydkkrgrWvAewskngkrkkkrfsvgkyGf.eeAkr 42 
                 ++++GV+++ +  ++ A  ++ng    ++ ++g++ + eeA++
  KOO22228.1 198 TGFRGVTRNGS--KYIANIRENG----TQRYLGTFATsEEAAL 234
                 589*******6..*********9....999***********97 PP

  == domain 4  score: 3.7 bits;  conditional E-value: 0.033
         AP2   3 ikGVrydkkrgrWvAe.wskngkrkkkrfsvgkyGf.eeAkr 42 
                 +kGV  +   gr+  + w +ng    kr +vg + + eeA++
  KOO22228.1 286 FKGVAEHY--GRYQGQiW-ENG----KRRYVGSFATpEEAAL 320
                 56665444..77777767.678....999***********97 PP

  == domain 5  score: 1.9 bits;  conditional E-value: 0.12
         AP2   1 pkikGVrydkkrgrWvAewskngkrkkkrfsvgkyGf.eeAkr 42 
                 ++++GV+++ +  ++ A+ ++ng       ++g + + eeA++
  KOO22228.1 370 TGFRGVTRNGS--KYNASITENG----PLRNLGMFATpEEAAL 406
                 589*******6..9999998888....6666777777777775 PP

  == domain 6  score: 11.3 bits;  conditional E-value: 0.00014
         AP2   1 pkikGVrydkkrgrWvAewskngkrkkkrfsvgkyGf.eeAkraA 44 
                 +++kGVr++   gr+ A+ ++ g    k  ++g + + eeA++ +
  KOO22228.1 456 TGFKGVRKHS--GRYKAHIKEKG----KHRYLGVFSTpEEAALCY 494
                 589******9..*******9977....999999999999999866 PP

  == domain 7  score: 7.0 bits;  conditional E-value: 0.003
         AP2   2 kikGVrydkkrgrWvAe..wskngkrkkkrfsvgkyGf.eeAkraAiaa 47 
                 ++kGV++++  + ++ +   ++ng     + ++g++ + eeA++++ ++
  KOO22228.1 543 GFKGVTKHR-GNEYANSrpIRENG-----QRHLGTFATpEEAALRYARY 585
                 789999999.78888555666677.....779************99776 PP

  == domain 8  score: 1.0 bits;  conditional E-value: 0.24
         AP2  30 fsvgkyGf.eeAkraA 44 
                  ++g++ + eeA++ +
  KOO22228.1 653 RHLGTFATpEEAALCY 668
                 479*********9755 PP

  == domain 9  score: -3.9 bits;  conditional E-value: 7.5
         AP2  33 gkyGfeeAk 41 
                 +kyG+ +A+
  KOO22228.1 723 KKYGMYKAR 731
                 89***9997 PP

  == domain 10  score: 5.6 bits;  conditional E-value: 0.0085
         AP2   1 pkikGVrydkkrgrWvAewskngkrkkkrfsvgkyGf.eeAkraAiaa 47 
                 +++kGV++++  g+++ + ++ng    k  ++g + + eeA++ + ++
  KOO22228.1 802 TGFKGVCKHH--GKYMGRIKENG----KARHLGFFATpEEAALCYARH 843
                 589****999..**********9....999999999999999877655 PP

  == domain 11  score: 4.5 bits;  conditional E-value: 0.018
         AP2   2 kikGVrydkkrgrWvAewskngkrkkkrfsvgkyGf.eeAkr 42 
                 ++kGV++     ++ A+ ++ng    k  ++g++ + eeA++
  KOO22228.1 892 GFKGVTKTY--YKYKAHTTENG----KMRHLGTFATpEEAAL 927
                 788887777..58899998999....9999**********97 PP

  == domain 12  score: 7.2 bits;  conditional E-value: 0.0026
         AP2   11 krgrWvAe.wskngkrkkkrfsvgkyGf.eeAkr 42  
                  ++gr+ +e w +ng    ++ ++g + + eeA++
  KOO22228.1  985 RSGRYTTEtW-ENG----RTHYLGSFATpEEAAL 1013
                  579*****99.678....**************97 PP

>> zf-RING_2  Ring finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.5   5.8   1.1e-08   2.5e-05       2      44 .]    1121    1185 ..    1120    1185 .. 0.79

  Alignments for each domain:
  == domain 1  score: 24.5 bits;  conditional E-value: 1.1e-08
   zf-RING_2    2 eCpICleel..ssads......vl.llpCgHv.fhreClerwlrssst..............CPlCr 44  
                   C+ICle+l  s          ++  +pC+   +h+ Cl++wl+ s +              CP+Cr
  KOO22228.1 1121 RCVICLEALdlS--AAssrgeaACgHTPCCGNyYHKRCLSQWLQGSGQsdndplpierlekkCPTCR 1185
                  6*****999532..33335555443557765659**********99999*****************9 PP

>> FANCL_C  FANCL C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.9   0.0       7.3   1.6e+04       6      16 ..     319     329 ..     317     335 .. 0.74
   2 !   17.8   2.5   1.2e-06    0.0028       3      62 ..    1120    1185 ..    1118    1192 .. 0.73

  Alignments for each domain:
  == domain 1  score: -3.9 bits;  conditional E-value: 7.3
                 SSS--SS-TT- CS
     FANCL_C   6 giCyayrldsg 16 
                  +Cya+r+  +
  KOO22228.1 319 ALCYARRIGAE 329
                 68****99554 PP

  == domain 2  score: 17.8 bits;  conditional E-value: 1.2e-06
                  -S-SSS--SS-..TT-----B--S-.TT----B-SGGGHHHHHHHHSSS-T...TT--EEE-TTT- CS
     FANCL_C    3 veCgiCyayrl..dsgevpdisCdn.ekCnkkfHsaCLkeWlrslkesrqs...fdvlfGeCPyCk 62  
                   +C iC+   +    +++ + +C   + C++ +H+ CL +Wl++  +s +    ++ l  +CP C+
  KOO22228.1 1120 ARCVICLEALDlsAASSRGEAACGHtPCCGNYYHKRCLSQWLQGSGQSDNDplpIERLEKKCPTCR 1185
                  589***98776455677889999762678999***********98776542212455666777776 PP

>> zf-rbx1  RING-H2 zinc finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   4.5   3.8e-06    0.0085       2      55 .]    1121    1185 ..    1120    1185 .. 0.82

  Alignments for each domain:
  == domain 1  score: 16.4 bits;  conditional E-value: 3.8e-06
     zf-rbx1    2 tCaiCrneleeacieckapgdeecpvvlGeCgHaFHlhCiskWlkt..............rkvCPlcr 55  
                   C iC ++l+  + +  + g++ c  +   Cg  +H+ C+s+Wl+               +k+CP+cr
  KOO22228.1 1121 RCVICLEALDLSAAS--SRGEAACGHTP-CCGNYYHKRCLSQWLQGsgqsdndplpierlEKKCPTCR 1185
                  699998888765544..44444466665.9***************9999*********9999*****8 PP

>> zf-RING_5  zinc-RING finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   5.6   0.00014      0.32       1      44 []    1121    1186 ..    1121    1186 .. 0.87

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00014
   zf-RING_5    1 hCnkCfekl.......skeekfyltsC.gHifCekClkkll..............ekeavCpiCrk 44  
                  +C +C e l       ++e ++  t+C g +++++Cl++ l                e++Cp+Cr+
  KOO22228.1 1121 RCVICLEALdlsaassRGEAACGHTPCcGNYYHKRCLSQWLqgsgqsdndplpieRLEKKCPTCRR 1186
                  6**********99766555556666655***********999*************9********95 PP

>> RINGv  RING-variant domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.2   5.6    0.0024       5.3       1      39 [.    1122    1166 ..    1122    1184 .. 0.60

  Alignments for each domain:
  == domain 1  score: 7.2 bits;  conditional E-value: 0.0024
                  ETTTTEE-SSSS...--B-SS-...-STCCCSB-HHHHHHHHHH..T CS
       RINGv    1 CriCleeeeese...plispCk...CrGslklvHesClekWlde..k 39  
                  C iCle+ + s      +  C    C G  ++ H+ Cl++Wl+   +
  KOO22228.1 1122 CVICLEALDLSAassRGEAACGhtpCCG--NYYHKRCLSQWLQGsgQ 1166
                  7777777655554453444453333888..89**********98441 PP

>> Transposase_20  Transposase IS116/IS110/IS902 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.0       2.1   4.7e+03      32      60 ..       7      35 ..       4      38 .. 0.82
   2 ?   -1.9   0.1       1.9   4.2e+03      29      52 ..     263     286 ..     240     297 .. 0.78
   3 ?    3.4   0.1     0.042        94      29      60 ..     435     466 ..     420     474 .. 0.79
   4 ?    5.8   0.1    0.0078        17      29      65 ..     521     557 ..     506     559 .. 0.89
   5 ?   -0.1   0.0      0.52   1.2e+03      30      61 ..     610     641 ..     587     645 .. 0.70
   6 ?   -1.7   0.0       1.6   3.6e+03      30      62 ..     696     728 ..     692     733 .. 0.79
   7 ?   -1.5   0.0       1.5   3.3e+03      29      60 ..     956     987 ..     941     990 .. 0.78

  Alignments for each domain:
  == domain 1  score: -2.0 bits;  conditional E-value: 2.1
  Transposase_20 32 kqlaayaGlapvenqSGkkkrrgriskrG 60
                    +++aa  Gl  v+ +S ++  +g ++k+G
      KOO22228.1  7 RAAAAAEGLELVPSSSNETGFKGVCKKHG 35
                    7889999*********9998788777777 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 1.9
  Transposase_20  29 ksakqlaayaGlapvenqSGkkkr 52 
                     + a+++aa  Gl  v+ +S ++  
      KOO22228.1 263 DEARAAAAAEGLELVPSSSNETGF 286
                     6789999999*****999988755 PP

  == domain 3  score: 3.4 bits;  conditional E-value: 0.042
  Transposase_20  29 ksakqlaayaGlapvenqSGkkkrrgriskrG 60 
                     + a+++aa  Gl  v+ +SG++  +g  +++G
      KOO22228.1 435 DEARAAAAAEGLELVPSSSGETGFKGVRKHSG 466
                     67999***************997755444444 PP

  == domain 4  score: 5.8 bits;  conditional E-value: 0.0078
  Transposase_20  29 ksakqlaayaGlapvenqSGkkkrrgriskrGnrrlR 65 
                     + a+++aa  Gl+ v+ +S ++  +g +++rGn + +
      KOO22228.1 521 DEARAAAAAEGLDLVPSSSNETGFKGVTKHRGNEYAN 557
                     67999*****************88*********9986 PP

  == domain 5  score: -0.1 bits;  conditional E-value: 0.52
  Transposase_20  30 sakqlaayaGlapvenqSGkkkrrgriskrGn 61 
                      a+ +aa  Gl   + +SG++  +g + + G+
      KOO22228.1 610 EARVAAAAEGLELLPSSSGESGFKGVVMHYGK 641
                     345566667***********977776666665 PP

  == domain 6  score: -1.7 bits;  conditional E-value: 1.6
  Transposase_20  30 sakqlaayaGlapvenqSGkkkrrgriskrGnr 62 
                      a+ +aa  Gl+ v+ +S ++  rg ++k G  
      KOO22228.1 696 EARVAAAAEGLVLVPSSSSETGFRGVTKKYGMY 728
                     567788899*********999888888887755 PP

  == domain 7  score: -1.5 bits;  conditional E-value: 1.5
  Transposase_20  29 ksakqlaayaGlapvenqSGkkkrrgriskrG 60 
                     + a+++aa  Gl  v+ +S ++  +  ++++G
      KOO22228.1 956 DEARAAAAAEGLELVPSSSSETGFKAVCNRSG 987
                     6789999999********99886665555555 PP

>> zf-C3HC4_3  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.6   8.6     0.014        30       4      46 ..    1121    1187 ..    1119    1189 .. 0.79

  Alignments for each domain:
  == domain 1  score: 4.6 bits;  conditional E-value: 0.014
                  B-TTTSSSBS-EEETT.....EEEEEE-.....HHHHHHHHH..............TT-B-TTT--B CS
  zf-C3HC4_3    4 eCviClerprnvvllp.....CgHlvlC.....eeCaekllk..............rkkkCpiCrrp 46  
                   CviCle+    +        CgH+ +C     ++C++++l+               +kkCp Crr+
  KOO22228.1 1121 RCVICLEALDLSAASSrgeaaCGHTPCCgnyyhKRCLSQWLQgsgqsdndplpierLEKKCPTCRRE 1187
                  6******744433332345559***9995555567*****999***********9999*******96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1205 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       449  (0.0250432); expected 358.6 (0.02)
Passed bias filter:                      272  (0.015171); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.75u 0.30s 00:00:01.05 Elapsed: 00:00:00.49
# Mc/sec: 7400.02
//
Query:       KOO22229.1  [L=141]
Description: hypothetical protein Ctob_005403 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (141 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       472  (0.0263261); expected 358.6 (0.02)
Passed bias filter:                      261  (0.0145574); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.28s 00:00:00.65 Elapsed: 00:00:00.42
# Mc/sec: 1014.67
//
Query:       KOO22230.1  [L=98]
Description: hypothetical protein Ctob_005405 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (98 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       180  (0.0100396); expected 358.6 (0.02)
Passed bias filter:                      138  (0.00769703); expected 358.6 (0.02)
Passed Vit filter:                        11  (0.000613531); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.22s 00:00:00.59 Elapsed: 00:00:00.39
# Mc/sec: 752.27
//
Query:       KOO22231.1  [L=168]
Description: hypothetical protein Ctob_005407 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
     0.0093   14.8   0.2      0.012   14.5   0.2    1.0  1  Amnionless      Amnionless
  ------ inclusion threshold ------
      0.016   15.7   0.0      0.023   15.2   0.0    1.2  1  FlgN            FlgN protein
      0.021   14.3   1.0      0.029   13.9   0.1    1.6  2  SQS_PSY         Squalene/phytoene synthase
      0.063   13.5   1.5         20    5.3   0.1    3.0  3  DUF3369         Domain of unknown function (DUF3369)
      0.064   13.9   5.8        0.2   12.3   5.8    1.8  1  DUF883          Bacterial protein of unknown function (DUF883
      0.086   12.7   4.7       0.13   12.1   4.7    1.2  1  Apolipoprotein  Apolipoprotein A1/A4/E domain
      0.088   12.3   2.5       0.12   11.9   2.5    1.1  1  DegS            Sensor protein DegS
      0.088   13.1   0.2        2.6    8.4   0.1    2.1  2  Phasin_2        Phasin protein
      0.098   11.6   0.8       0.12   11.4   0.8    1.0  1  Vps53_N         Vps53-like, N-terminal
       0.18   10.0   0.2       0.24    9.5   0.2    1.1  1  Virul_Fac       Putative bacterial virulence factor
          9    6.7  11.8         11    6.5   1.2    2.4  2  FAM25           FAM25 family


Domain annotation for each model (and alignments):
>> Amnionless  Amnionless
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.5   0.2   7.1e-06     0.012     274     371 ..      11     107 ..       2     120 .. 0.63

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 7.1e-06
  Amnionless 274 skvaksqr..evssdeeiqivild.pekgsyaerlaqelladiaehgealgilsaeletsgasssdssaagapgesaglvlgivfglvlllllllilll 369
                 ++v+k+++    ++ e +q v++  +e+ + a++  qe++++  eh +++g l+ +  ++ + +s+      ++++  +v   v+g ++++ll+li+ +
  KOO22231.1  11 EEVVKKSSehVERAREGLQEVVKKsSEHVERAREGLQEVVKKSSEHVKHVGRLAEQHLAAIKGTSSAG---LSYSNPHVV-YAVAGGAVIVLLVLIYCF 105
                 44444444334457888999999967777888888888888888888888877776666666655555...333333333.335555555555555544 PP

  Amnionless 370 ll 371
                 l 
  KOO22231.1 106 LC 107
                 43 PP

>> FlgN  FlgN protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.2   0.0   1.4e-05     0.023      71     143 ..      20      93 ..       3      95 .. 0.82

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 1.4e-05
                 -..SCHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCHXXXX.XXXXXXXX CS
        FlgN  71 s..aeeatlsellakeedeelkelwqelkelleelkelnelNgrlieqslefnqrllnllqgaanksntYgadGk 143
                      +++l+e+++ ++ e ++ +++ l+e++++  e  ++ grl eq+l+ ++ + ++  + +n+  +Y  +G+
  KOO22231.1  20 HveRAREGLQEVVK-KSSEHVERAREGLQEVVKKSSEHVKHVGRLAEQHLAAIKGTSSAGLSYSNPHVVYAVAGG 93 
                 13444788999998.999*************************************99999999998888877775 PP

>> SQS_PSY  Squalene/phytoene synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.1   1.8e-05     0.029     179     247 ..       5      73 ..       1      86 [. 0.85
   2 ?   -1.4   0.1      0.81   1.3e+03     139     151 ..     129     141 ..      90     152 .. 0.73

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 1.8e-05
                 HHT--HHHHHHT-.-SHH.HHHHHHHHHHHHHHHHHHHHHTGGGS.-HHHHHHHHHHHHHHHHHHHHHHH CS
     SQS_PSY 179 efgvseedllrkgvrsae.lrallrrlaerArelldearellkqlpdrrarpalllavalyraileriea 247
                 +  v+ e++++k+  + e +r+ l+++++++ e+ ++are+l+ +  +++   ++   +l+++ l +i+ 
  KOO22231.1   5 RARVGLEEVVKKSSEHVErAREGLQEVVKKSSEHVERAREGLQEV-VKKSSEHVKHVGRLAEQHLAAIKG 73 
                 5678889999999666666*************************9.777888899999999999999875 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 0.81
                 HHHHHHHHHHHHH CS
     SQS_PSY 139 ralaeaarrlGka 151
                  alaea+r++G+a
  KOO22231.1 129 LALAEAGRHMGTA 141
                 4567777788776 PP

>> DUF3369  Domain of unknown function (DUF3369)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.3   0.0      0.11   1.7e+02      14      29 ..       3      18 ..       1      21 [. 0.86
   2 ?    4.2   0.1     0.027        44      14      29 ..      21      36 ..      18      38 .. 0.88
   3 ?    5.3   0.1     0.012        20      13      30 ..      38      55 ..      34      77 .. 0.85

  Alignments for each domain:
  == domain 1  score: 2.3 bits;  conditional E-value: 0.11
     DUF3369 14 ieasRrGLekIieasa 29
                 e++R GLe++++ s+
  KOO22231.1  3 SERARVGLEEVVKKSS 18
                6899********9887 PP

  == domain 2  score: 4.2 bits;  conditional E-value: 0.027
     DUF3369 14 ieasRrGLekIieasa 29
                +e++R+GL+++++ s+
  KOO22231.1 21 VERAREGLQEVVKKSS 36
                79**********9987 PP

  == domain 3  score: 5.3 bits;  conditional E-value: 0.012
     DUF3369 13 aieasRrGLekIieasae 30
                 +e++R+GL+++++ s+e
  KOO22231.1 38 HVERAREGLQEVVKKSSE 55
                589**********99986 PP

>> DUF883  Bacterial protein of unknown function (DUF883)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   5.8   0.00012       0.2      20      87 ..      12      98 ..       2     103 .. 0.55

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 0.00012
      DUF883 20 eaadeageeaeelRerleerlerarerlrdaeeavaerakeaaeaaddy...................VrenPwqavGiAagvGlll 87
                e  +++ e++e++Re l+e ++++ e++++a+e ++e +k+ +e+++++                      nP  + ++A g  ++l
  KOO22231.1 12 EVVKKSSEHVERAREGLQEVVKKSSEHVERAREGLQEVVKKSSEHVKHVgrlaeqhlaaikgtssaglSYSNPHVVYAVAGGAVIVL 98
                555666666666666666666666666666666666666666655555433333333333333333444556666666666655555 PP

>> Apolipoprotein  Apolipoprotein A1/A4/E domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   4.7   8.1e-05      0.13     106     167 ..       4      68 ..       2      80 .. 0.49

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 8.1e-05
                     HHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH-----..---...--SSSHHHHHHHTS-TTS CS
  Apolipoprotein 106 erlerhvealkarlapyveelrqklaerleelkeslaphaeeve...erlssrveelrekleeqa 167
                     er++ ++e++ ++ ++ ve++r++l+e ++  +e+++ + e ++    + s++v+++ + +e+ +
      KOO22231.1   4 ERARVGLEEVVKKSSEHVERAREGLQEVVKKSSEHVERAREGLQevvKKSSEHVKHVGRLAEQHL 68 
                     55555556666666666666665555555555555554444333222444444444444444443 PP

>> DegS  Sensor protein DegS
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   2.5   7.2e-05      0.12       1      56 [.      11      66 ..      11      72 .. 0.94

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 7.2e-05
        DegS  1 dkiikktietiekskeeifeIaEsarkeverlkkeleelkeevsevikevdklekk 56
                ++++kk  e +e+ +e + e+  ++ ++ver ++ l+e+ ++ se +k+v +l+++
  KOO22231.1 11 EEVVKKSSEHVERAREGLQEVVKKSSEHVERAREGLQEVVKKSSEHVKHVGRLAEQ 66
                5899999*******************************************999876 PP

>> Phasin_2  Phasin protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.4   0.1    0.0016       2.6      56      98 ..      10      52 ..       2      54 .. 0.89
   2 ?    5.4   0.0     0.014        23       8      46 ..      43      81 ..      42      84 .. 0.82

  Alignments for each domain:
  == domain 1  score: 8.4 bits;  conditional E-value: 0.0016
    Phasin_2 56 pqellelqselaqpalekavayarklaelaaktqeeaaklaea 98
                ++e++++ se++++a e + +  +k +e + +++e +++++++
  KOO22231.1 10 LEEVVKKSSEHVERAREGLQEVVKKSSEHVERAREGLQEVVKK 52
                7899999999999999999999999999999999999999986 PP

  == domain 2  score: 5.4 bits;  conditional E-value: 0.014
    Phasin_2  8 kknlealealaslalegaeklaelqleaarasleeslaa 46
                ++ l+ +++ +s+ ++++ +lae+ l+a++ + +++l++
  KOO22231.1 43 REGLQEVVKKSSEHVKHVGRLAEQHLAAIKGTSSAGLSY 81
                566777888888899999999999999999999998876 PP

>> Vps53_N  Vps53-like, N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.8   7.1e-05      0.12      17      80 ..       4      64 ..       1      75 [. 0.76

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 7.1e-05
     Vps53_N 17 eqslanidelikklqeeikklddeiksvvraqanvgekgkealeeaqkaieelfqkikeikdka 80
                e +  +++e++kk  e++++  + +++vv+++++  e+++e l+e+ k     ++++k++   a
  KOO22231.1  4 ERARVGLEEVVKKSSEHVERAREGLQEVVKKSSEHVERAREGLQEVVKK---SSEHVKHVGRLA 64
                6666789**************************9999999988776554...444444444444 PP

>> Virul_Fac  Putative bacterial virulence factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   0.2   0.00015      0.24       7      58 ..      31      81 ..      27      87 .. 0.94

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 0.00015
   Virul_Fac  7 evrenaervdseadslieklrrsrnaarrlgkaaerpmsvgvFGlSQAGKSy 58
                 v++++e+v++ ++ l+e +++s ++++++g+ ae++++ ++ G S AG Sy
  KOO22231.1 31 VVKKSSEHVERAREGLQEVVKKSSEHVKHVGRLAEQHLA-AIKGTSSAGLSY 81
                5899******************************99886.699********9 PP

>> FAM25  FAM25 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.5   3.3     0.013        22       5      37 ..      10      41 ..       6      46 .. 0.86
   2 ?    6.5   1.2    0.0066        11       3      22 ..      44      63 ..      42      72 .. 0.84

  Alignments for each domain:
  == domain 1  score: 5.5 bits;  conditional E-value: 0.013
       FAM25  5 veevvkevveHaKeaGEKAiadalKkAqesgek 37
                 eevvk   eH+  a E  + +++Kk  e  e+
  KOO22231.1 10 LEEVVKKSSEHVERARE-GLQEVVKKSSEHVER 41
                69**********99988.6999***99998877 PP

  == domain 2  score: 6.5 bits;  conditional E-value: 0.0066
       FAM25  3 haveevvkevveHaKeaGEK 22
                +  +evvk   eH+K +G  
  KOO22231.1 44 EGLQEVVKKSSEHVKHVGRL 63
                5679*************965 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (168 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1615  (0.0900775); expected 358.6 (0.02)
Passed bias filter:                     1206  (0.0672653); expected 358.6 (0.02)
Passed Vit filter:                       192  (0.0107089); expected 17.9 (0.001)
Passed Fwd filter:                        13  (0.000725082); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.52u 0.30s 00:00:00.82 Elapsed: 00:00:00.44
# Mc/sec: 1154.67
//
Query:       KOO22232.1  [L=186]
Description: hypothetical protein Ctob_005406 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.5e-05   23.2   8.2      0.047   13.5   0.5    3.4  3  IQ        IQ calmodulin-binding motif


Domain annotation for each model (and alignments):
>> IQ  IQ calmodulin-binding motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.7   0.1   0.00019       3.5       1      13 [.     114     126 ..     114     133 .. 0.91
   2 !   13.5   0.5   2.6e-06     0.047       1      17 [.     141     157 ..     141     160 .. 0.87
   3 !    5.6   0.4    0.0009        16       2      19 ..     169     186 .]     168     186 .] 0.88

  Alignments for each domain:
  == domain 1  score: 7.7 bits;  conditional E-value: 0.00019
                 HHHHHHHHHHHHH CS
          IQ   1 rkaaikIQaawRG 13 
                 +ka i IQa++R 
  KOO22232.1 114 EKATIAIQARVRS 126
                 59*********96 PP

  == domain 2  score: 13.5 bits;  conditional E-value: 2.6e-06
                 HHHHHHHHHHHHHHHHH CS
          IQ   1 rkaaikIQaawRGylaR 17 
                 r+aa+++Qa +RG+  R
  KOO22232.1 141 RAAATIMQASYRGHTGR 157
                 68************766 PP

  == domain 3  score: 5.6 bits;  conditional E-value: 0.0009
                 HHHHHHHHHHHHHHHHHH CS
          IQ   2 kaaikIQaawRGylaRkr 19 
                  aa ++Qa  RG   Rk+
  KOO22232.1 169 HAAALMQALMRGRAERKK 186
                 5999********988885 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (186 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1025  (0.0571699); expected 358.6 (0.02)
Passed bias filter:                      394  (0.0219756); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.24s 00:00:00.65 Elapsed: 00:00:00.40
# Mc/sec: 1386.07
//
Query:       KOO22233.1  [L=269]
Description: thiopurine s-methyltransferase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.3e-37  127.9   0.0    9.9e-19   67.9   0.0    2.0  2  TPMT             Thiopurine S-methyltransferase (TPMT)
     0.0016   18.3   0.0       0.04   13.8   0.0    2.1  2  Methyltransf_23  Methyltransferase domain
  ------ inclusion threshold ------
      0.023   15.4   0.0         10    6.9   0.0    2.3  2  Methyltransf_25  Methyltransferase domain
      0.086   13.5   0.0        5.3    7.8   0.0    2.3  1  Methyltransf_11  Methyltransferase domain
       0.34   11.0   2.5       0.86    9.7   0.1    2.5  3  DUF2300          Predicted secreted protein (DUF2300)


Domain annotation for each model (and alignments):
>> TPMT  Thiopurine S-methyltransferase (TPMT)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.2   0.0   2.4e-19   8.7e-16       5      81 ..      16      95 ..      12     107 .. 0.90
   2 !   67.9   0.0   2.8e-22   9.9e-19     114     218 .]     161     262 ..     116     262 .. 0.83

  Alignments for each domain:
  == domain 1  score: 58.2 bits;  conditional E-value: 2.4e-19
                HHHHHHHTT--TT--SS--HHHHHHHHT....T-S--EEEEEET-TT-HHHHHH-BTTEEEEEE-S-HHHHHHHHHHHTT CS
        TPMT  5 fWekrweeeqipfhqeevnpllkkflda...lkakaglrvlvPlCGkaldlvwlAeqgrevvGvelselAvekffeeanl 81
                 W +rw ++ +++h+e+ +p l+ +l++      + + ++l+PlCG ++dl  +A +g++vvGve  + A+ +  +e+++
  KOO22233.1 16 YWRDRWLNKMLGWHLENPHPVLMTHLNDwlgDDGETQRSILFPLCGASVDLGCIARRGHQVVGVEAVPEAIDRLLSEYGE 95
                7*************************9974346778889*********************************99998876 PP

  == domain 2  score: 67.9 bits;  conditional E-value: 2.8e-22
                 -..EEEEEEESSTTTS-GGGHHHHHHHHHHHEEEEEE..EEEEE---S----SS----HHHHHHHHGGTEEEEEEEETT--TT................ CS
        TPMT 114 lgkfdliydraalvAlppelreryakslaelLkpdgeglLvtldypqaeheGPPfsvpeaeleallsagfkvaeleeedaleeevrkkaagvealeekv 212
                   +fd+ +dr+ lvA+ p++r+rya+ l e L+p+g+ lLv+++ ++a   GPP sv+e+e+++ll+ +f++++l+  d  ++e+ k   gv++++e  
  KOO22233.1 161 FPEFDCAFDRGGLVAVAPSDRPRYAAVLSEQLRPGGKLLLVVVEHEPA--FGPPHSVDESEVRRLLGSAFEIQKLSVVDEKDKEPWKA-KGVKRFDEVA 256
                 3479****************************************9987..5**************************99999866555.6********* PP

                 ....TT CS
        TPMT 213 yvlerk 218
                 y+ +rk
  KOO22233.1 257 YMCTRK 262
                 *99986 PP

>> Methyltransf_23  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.3   0.1     0.036   1.3e+02      94     114 ..      29      50 ..      22      52 .. 0.84
   2 !   13.8   0.0   1.1e-05      0.04      37     121 ..      66     204 ..      60     242 .. 0.77

  Alignments for each domain:
  == domain 1  score: 2.3 bits;  conditional E-value: 0.036
  Methyltransf_23  94 hvpd.ppellrqiatllkpgGy 114
                      h+++ +p l+++++++l ++G 
       KOO22233.1  29 HLENpHPVLMTHLNDWLGDDGE 50 
                      6776589*************95 PP

  == domain 2  score: 13.8 bits;  conditional E-value: 1.1e-05
  Methyltransf_23  37 levlrengfsvtgvDlspeaveiae......................................kakkaqkdqfdeqeaaepqg........... 81 
                      l +++++g++v+gv++ pea++++                                       +                  +           
       KOO22233.1  66 LGCIARRGHQVVGVEAVPEAIDRLLseygeeieggrppdarlwlrvgqpnwmqkvaaeqlsksE------------------Krsmtyqpapfl 141
                      567899***************9988999999999999999998888655544443333222220..................134555555566 PP

  Methyltransf_23  82 .....................kfdlIvlrevlehvp..dppellrqiatllkpgGylllsepl 121
                                            fd++  r +l  v   d p++ + + + l+pgG lll ++ 
       KOO22233.1 142 favqgdflafdrpaasqwgfpEFDCAFDRGGLVAVApsDRPRYAAVLSEQLRPGGKLLLVVVE 204
                      6666677777777889999*****************8889******************99974 PP

>> Methyltransf_25  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.4   0.0     0.004        14       6      41 ..      60      93 ..      55     102 .. 0.87
   2 ?    6.9   0.0    0.0029        10      55      97 .]     156     196 ..     118     196 .. 0.80

  Alignments for each domain:
  == domain 1  score: 6.4 bits;  conditional E-value: 0.004
                     -TTSHHHHHHHCTSTSSEEEEEESSHHHHHHHHHHH CS
  Methyltransf_25  6 cGtGrltlalakrlgkakvtgvDiseemleaarera 41
                     cG   ++  +a+r+  ++v+gv+  +e++++  +++
       KOO22233.1 60 CGASVDLGCIARRG--HQVVGVEAVPEAIDRLLSEY 93
                     999999999****5..*************9987665 PP

  == domain 2  score: 6.9 bits;  conditional E-value: 0.0029
                      CCGBSSSTTTEEEEEEESTGGGSSHHHHHHHHHHHHHHEEEEE CS
  Methyltransf_25  55 aedlpfedgsfDlvvssgalhhlsdedlekalkeiarvLkpgG 97 
                      a+++ f++  fD+ + +g+l  + ++d++++ + +++ L+pgG
       KOO22233.1 156 ASQWGFPE--FDCAFDRGGLVAVAPSDRPRYAAVLSEQLRPGG 196
                      34455664..******999*9*********************9 PP

>> Methyltransf_11  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.8   0.0    0.0015       5.3       5      43 ..      60      98 ..      58     200 .. 0.57

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 0.0015
                     -TTSHHHHHHHHTTSEEEEEES-HHHHHHHHHHCCHHT- CS
  Methyltransf_11  5 cGtGrlaealakrgarvvgvDlskemlklakekaseegl 43
                     cG+   +  +a+rg++vvgv+  +e++++  +++ ee +
       KOO22233.1 60 CGASVDLGCIARRGHQVVGVEAVPEAIDRLLSEYGEEIE 98
                     677777777788888888888888888777666655543 PP

>> DUF2300  Predicted secreted protein (DUF2300)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.3   0.4         5   1.8e+04      47      54 ..      17      24 ..      15      34 .. 0.70
   2 ?    9.7   0.1   0.00024      0.86      44      67 ..     101     124 ..      70     136 .. 0.85
   3 ?    0.8   0.0      0.13   4.8e+02      29      58 ..     222     251 ..     219     259 .. 0.88

  Alignments for each domain:
  == domain 1  score: -4.3 bits;  conditional E-value: 5
     DUF2300 47 waeaWlar 54
                w+ +Wl++
  KOO22233.1 17 WRDRWLNK 24
                67777764 PP

  == domain 2  score: 9.7 bits;  conditional E-value: 0.00024
     DUF2300  44 alawaeaWlarqapaWlrelralq 67 
                 + + a+ Wl+ ++p+W+++++a+q
  KOO22233.1 101 RPPDARLWLRVGQPNWMQKVAAEQ 124
                 567899*************99887 PP

  == domain 3  score: 0.8 bits;  conditional E-value: 0.13
     DUF2300  29 aslglyfepqrlalqalawaeaWlarqapa 58 
                   lg++fe q+l++  ++  e W a++ ++
  KOO22233.1 222 RLLGSAFEIQKLSVVDEKDKEPWKAKGVKR 251
                 579999*******************99775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (269 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       226  (0.0126053); expected 358.6 (0.02)
Passed bias filter:                      215  (0.0119917); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.43u 0.27s 00:00:00.70 Elapsed: 00:00:00.44
# Mc/sec: 1851.85
//
Query:       KOO22234.1  [L=176]
Description: methionine-r-sulfoxide reductase b2 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.1e-47  160.2   0.2    2.6e-47  159.9   0.2    1.1  1  SelR             SelR domain
  ------ inclusion threshold ------
      0.011   15.4   0.7        1.4    8.7   0.1    2.3  2  zinc_ribbon_10   Predicted integral membrane zinc-ribbon meta
      0.036   14.1   0.3       0.12   12.4   0.3    1.9  1  DZR              Double zinc ribbon
      0.097   12.8   2.6       0.38   10.9   0.6    2.8  3  zf-Mss51         Zinc-finger of mitochondrial splicing suppre
       0.14   12.3   0.7        1.4    9.1   0.0    2.1  2  DUF2318          Predicted membrane protein (DUF2318)
       0.14   11.7   1.8        3.1    7.4   0.1    2.5  2  TF_Zn_Ribbon     TFIIB zinc-binding
       0.17   12.1   2.3       0.67   10.2   0.1    2.3  2  Ribosomal_L37e   Ribosomal protein L37e
       0.18   12.1   0.5       0.72   10.1   0.5    2.0  1  Yippee-Mis18     Yippee zinc-binding/DNA-binding /Mis18, cent
        7.9    6.0   7.5         18    4.9   0.6    3.1  3  zf-ribbon_3      zinc-ribbon domain


Domain annotation for each model (and alignments):
>> SelR  SelR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  159.9   0.2   1.3e-50   2.6e-47       1     120 [.      22     141 ..      22     142 .. 0.97

  Alignments for each domain:
  == domain 1  score: 159.9 bits;  conditional E-value: 1.3e-50
                 HHHCTSHCCHHHHHHHTT-SSTTSSSTSS--.SSCEEEETTTS-EEEECCCCE-STTSSSEESS-STTTTEEEEEEECTTSEEEEEEETTCECEEEEEE CS
        SelR   1 elkkkLtpeqyevlrekgterpftgeyekek.ekGvyecavcgepLfssetkfdsgcGwpsFaeaikeeavkekkdtslgmertevvcakcdahlGhvF 98 
                 e++k+L++e++++lrekgterp tg+y+k++ ++G ++ca+cg+pL+s+ +kfdsgcGwp+F + +++ av +++d+s+gm+r+e++c +c++hlGhvF
  KOO22234.1  22 EWQKELSREEFYILREKGTERPRTGQYDKFYpKEGHFVCAGCGTPLYSAAAKFDSGCGWPAFDKIVEG-AVVTQTDRSMGMVRVEIMCGNCGGHLGHVF 119
                 7****************************98689********************************99.9***************************** PP

                 CTSSSSS.SEEEEE-CCCEEEE CS
        SelR  99 edgpkpttgkrycinsvslkfk 120
                 e +  ++t++r+c+ns+s+k++
  KOO22234.1 120 EGERMTPTNERHCVNSISVKYV 141
                 *8888889***********996 PP

>> zinc_ribbon_10  Predicted integral membrane zinc-ribbon metal-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.1   0.1    0.0093        19      33      52 ..      46      65 ..      42      66 .. 0.84
   2 ?    8.7   0.1   0.00071       1.4       2      37 ..      83     121 ..      82     134 .. 0.73

  Alignments for each domain:
  == domain 1  score: 5.1 bits;  conditional E-value: 0.0093
  zinc_ribbon_10 33 GlapkeeleevkyrCpkCga 52
                    G++ k  ++e  ++C+ Cg+
      KOO22234.1 46 GQYDKFYPKEGHFVCAGCGT 65
                    78877788999*******95 PP

  == domain 2  score: 8.7 bits;  conditional E-value: 0.00071
  zinc_ribbon_10   2 fDrvldvLvGdde..tsaknryalICskChshnGlap.k 37 
                     fD++++  v +++  +  + r+ + C +C  h G +   
      KOO22234.1  83 FDKIVEGAVVTQTdrSMGMVRVEIMCGNCGGHLGHVFeG 121
                     78888754444333588899*************998644 PP

>> DZR  Double zinc ribbon
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.3   5.9e-05      0.12      12      36 ..      57     113 ..      51     134 .. 0.90

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 5.9e-05
         DZR  12 arfCseCgtklkavaa................................edrCpsCge 36 
                   +C  Cgt+l ++aa                                e++C +Cg 
  KOO22234.1  57 HFVCAGCGTPLYSAAAkfdsgcgwpafdkivegavvtqtdrsmgmvrvEIMCGNCGG 113
                 56899999999877779999999999999999***********************85 PP

>> zf-Mss51  Zinc-finger of mitochondrial splicing suppressor 51
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.6   0.00019      0.38      11      33 ..      52      74 ..      16      78 .. 0.83
   2 ?   -2.0   0.0       1.9   3.9e+03      21      26 ..      77      82 ..      71      84 .. 0.85
   3 ?    0.2   0.0      0.42   8.4e+02      14      23 ..     103     112 ..      93     131 .. 0.85

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00019
    zf-Mss51 11 apkhvdfeCpdCGiptycseehw 33
                 pk+ +f C  CG p y   +++
  KOO22234.1 52 YPKEGHFVCAGCGTPLYSAAAKF 74
                688999***********988766 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 1.9
    zf-Mss51 21 dCGipt 26
                 CG+p 
  KOO22234.1 77 GCGWPA 82
                5***96 PP

  == domain 3  score: 0.2 bits;  conditional E-value: 0.42
    zf-Mss51  14 hvdfeCpdCG 23 
                 +v++ C +CG
  KOO22234.1 103 RVEIMCGNCG 112
                 78999****9 PP

>> DUF2318  Predicted membrane protein (DUF2318)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.1   0.0   0.00069       1.4      43      87 ..      49      92 ..      44     100 .. 0.83
   2 ?    2.6   0.1     0.071   1.4e+02      24      55 ..      93     127 ..      81     151 .. 0.62

  Alignments for each domain:
  == domain 1  score: 9.1 bits;  conditional E-value: 0.00069
     DUF2318 43 kgYvqegeelvCknCgvrfaldsigekkGGCnpipleytvkgdki 87
                ++++ ++ + vC  Cg+ +  +  + ++ GC   ++++ v+g  +
  KOO22234.1 49 DKFYPKEGHFVCAGCGTPLYSAAAK-FDSGCGWPAFDKIVEGAVV 92
                5799999*************99999.999**87777776666554 PP

  == domain 2  score: 2.6 bits;  conditional E-value: 0.071
     DUF2318  24 kksdgklr..valdaCevC.ekkgYvqegeelvCk 55 
                  ++d ++    +  +C  C ++ g+v ege+++ +
  KOO22234.1  93 TQTDRSMGmvRVEIMCGNCgGHLGHVFEGERMTPT 127
                 55555444212233788887777888888888754 PP

>> TF_Zn_Ribbon  TFIIB zinc-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.4   0.1    0.0015       3.1      15      27 ..      53      65 ..      46      67 .. 0.86
   2 ?    3.0   0.2     0.037        74      19      26 ..     105     112 ..     103     118 .. 0.78

  Alignments for each domain:
  == domain 1  score: 7.4 bits;  conditional E-value: 0.0015
                  TSTTCEEESSSSB CS
  TF_Zn_Ribbon 15 pergelvCtdCGl 27
                  p++g +vC  CG+
    KOO22234.1 53 PKEGHFVCAGCGT 65
                  6889*******96 PP

  == domain 2  score: 3.0 bits;  conditional E-value: 0.037
                   CEEESSSS CS
  TF_Zn_Ribbon  19 elvCtdCG 26 
                   e+ C++CG
    KOO22234.1 105 EIMCGNCG 112
                   77899996 PP

>> Ribosomal_L37e  Ribosomal protein L37e
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.1   0.00034      0.67      14      41 ..      55      82 ..      45      86 .. 0.90
   2 ?    1.4   0.2      0.18   3.6e+02       6      25 ..      98     114 ..      93     121 .. 0.76

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.00034
  Ribosomal_L37e 14 ktHilCrrCgkrsyhvqkktCascGyps 41
                    + H +C  Cg   y    k  + cG+p+
      KOO22234.1 55 EGHFVCAGCGTPLYSAAAKFDSGCGWPA 82
                    57************************86 PP

  == domain 2  score: 1.4 bits;  conditional E-value: 0.18
  Ribosomal_L37e   6 sfGkrqkkktHilCrrCgkr 25 
                     s+G     ++ i+C  Cg +
      KOO22234.1  98 SMGMV---RVEIMCGNCGGH 114
                     77777...457999999965 PP

>> Yippee-Mis18  Yippee zinc-binding/DNA-binding /Mis18, centromere assembly
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.5   0.00036      0.72       3      71 ..      58     121 ..      56     142 .. 0.63

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.00036
                   EEETTTS-EEEECCCEEEEECCCEEEES---CCCEEEECEEEETTSTTEEEEEEEETTT--EEEEEEEE CS
  Yippee-Mis18   3 fqCkkCktilgdslqlvsegralnivvlkkvtrnvvvgkelvtdeegkctystlsCkgCnsvlGwkYks 71 
                   f C+ C t+l  + + +++g      + k v+ +vv+++  ++         ++ C +C+ +lG +++ 
    KOO22234.1  58 FVCAGCGTPLYSAAAKFDSGCG-WPAFDKIVEGAVVTQTDRSMG----MVRVEIMCGNCGGHLGHVFEG 121
                   5666666666666666665555.333344455556655555555....77899************9974 PP

>> zf-ribbon_3  zinc-ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.9   0.3     0.019        38      18      26 .]      59      67 ..      53      67 .. 0.82
   2 ?   -1.0   0.0      0.66   1.3e+03       8      14 ..      78      83 ..      76      87 .. 0.74
   3 ?    4.9   0.6    0.0092        18      17      24 ..     106     113 ..     105     115 .. 0.82

  Alignments for each domain:
  == domain 1  score: 3.9 bits;  conditional E-value: 0.019
  zf-ribbon_3 18 vCpyCGtkl 26
                 vC+ CGt+l
   KOO22234.1 59 VCAGCGTPL 67
                 8******97 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 0.66
  zf-ribbon_3  8 CGaplss 14
                 CG+p + 
   KOO22234.1 78 CGWP-AF 83
                 9*99.55 PP

  == domain 3  score: 4.9 bits;  conditional E-value: 0.0092
  zf-ribbon_3  17 nvCpyCGt 24 
                  ++C +CG+
   KOO22234.1 106 IMCGNCGG 113
                  79*****7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (176 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       445  (0.0248201); expected 358.6 (0.02)
Passed bias filter:                      386  (0.0215294); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.44u 0.23s 00:00:00.67 Elapsed: 00:00:00.42
# Mc/sec: 1243.49
//
Query:       KOO22235.1  [L=312]
Description: hypothetical protein Ctob_005413 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.2e-08   33.2   1.2    2.2e-08   33.2   1.2    1.9  2  zf-RanBP       Zn-finger in Ran binding protein and others
    0.00039   20.2  14.4      0.038   13.9   2.9    3.3  3  PKcGMP_CC      Coiled-coil N-terminus of cGMP-dependent prote
  ------ inclusion threshold ------
      0.074   12.9   0.2       0.14   12.0   0.2    1.4  1  ADH_N          Alcohol dehydrogenase GroES-like domain
        2.1    8.0   8.0         13    5.5   2.3    2.5  2  GATA           GATA zinc finger
          4    8.0  16.2         17    6.0   1.2    3.1  2  DUF16          Protein of unknown function DUF16
        5.8    6.7  13.2        2.5    7.9   3.3    2.6  2  Spc29          Spindle Pole Component 29
        9.8    6.3  25.7        1.2    9.2   2.0    4.0  3  NYD-SP28       Sperm tail


Domain annotation for each model (and alignments):
>> zf-RanBP  Zn-finger in Ran binding protein and others
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.2      0.42   1.1e+03      21      25 ..      63      67 ..      60      69 .. 0.75
   2 !   33.2   1.2   8.7e-12   2.2e-08       3      30 .]     285     312 .]     285     312 .] 0.95

  Alignments for each domain:
  == domain 1  score: -0.9 bits;  conditional E-value: 0.42
                -TTT- CS
    zf-RanBP 21 CvaCq 25
                C+aC+
  KOO22235.1 63 CIACG 67
                77775 PP

  == domain 2  score: 33.2 bits;  conditional E-value: 8.7e-12
                 SSEE-SSS--EEESSSSB-TTT--BTSC CS
    zf-RanBP   3 gdWdCskClvqNfawstkCvaCqapkpd 30 
                 g W+C +C+++N+a +t C+aC++ + +
  KOO22235.1 285 GPWQCRVCTLRNEAARTLCEACGSDRFQ 312
                 79**********************9975 PP

>> PKcGMP_CC  Coiled-coil N-terminus of cGMP-dependent protein kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.9   2.9   1.5e-05     0.038       2      20 ..      36      54 ..      35      55 .. 0.91
   2 ?   -2.0   0.4       1.3   3.4e+03      13      24 ..     121     132 ..     115     142 .. 0.58
   3 !   13.6   0.2   1.8e-05     0.047       5      25 ..     174     194 ..     172     197 .. 0.87

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 1.5e-05
   PKcGMP_CC  2 llllKDERIRELEkrlaek 20
                +++ KDE+I+ELE+ l+++
  KOO22235.1 36 VVKEKDEKIAELEEELSKR 54
                6899************987 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 1.3
   PKcGMP_CC  13 LEkrlaekdeEI 24 
                 LE +l+ +   I
  KOO22235.1 121 LELQLETRTSKI 132
                 455555554444 PP

  == domain 3  score: 13.6 bits;  conditional E-value: 1.8e-05
   PKcGMP_CC   5 lKDERIRELEkrlaekdeEIq 25 
                  K   IREL++ l+++de I+
  KOO22235.1 174 TKGVQIRELQDGLKRRDEQIE 194
                 57779*************997 PP

>> ADH_N  Alcohol dehydrogenase GroES-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.2   5.6e-05      0.14      31      83 ..     253     305 ..     239     311 .. 0.86

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 5.6e-05
                 SSEE---EEEEEEEEESTT-CS--TT-EEEE-SEEE-SSSHHHHTT-GGG-TT CS
       ADH_N  31 lplilGHEivGeveevgpevkklkvGdrVvvepliscgeCaaCkegeenlCee 83 
                  +l  G   +G   +vg +v +l+ G+ V++   ++c  C   +e +++lCe 
  KOO22235.1 253 SGLGSGGGGAGRNGAVGAAVAELTFGQAVAALGPWQCRVCTLRNEAARTLCEA 305
                 555667777888899**************************999999999975 PP

>> GATA  GATA zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.2   0.3    0.0061        16      14      27 ..      54      67 ..      53      68 .. 0.89
   2 ?    5.5   2.3    0.0051        13      19      27 ..     299     307 ..     289     309 .. 0.86

  Alignments for each domain:
  == domain 1  score: 5.2 bits;  conditional E-value: 0.0061
        GATA 14 rgpdgnksLCnaCG 27
                r p +++ LC aCG
  KOO22235.1 54 RRPLNQRVLCIACG 67
                6789999******9 PP

  == domain 2  score: 5.5 bits;  conditional E-value: 0.0051
        GATA  19 nksLCnaCG 27 
                 +++LC+aCG
  KOO22235.1 299 ARTLCEACG 307
                 689*****9 PP

>> DUF16  Protein of unknown function DUF16
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.0   1.2    0.0066        17      34      76 ..      14      56 ..       6      75 .. 0.84
   2 ?    3.4   7.9     0.041     1e+02      43      79 ..     154     194 ..      83     208 .. 0.74

  Alignments for each domain:
  == domain 1  score: 6.0 bits;  conditional E-value: 0.0066
                HHHHHHHHHHH...HHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
       DUF16 34 qrLkkieakvdklgeqinkleqkvekqgekikelkveqkaqge 76
                ++L +  a++++l+ ++++    v++++eki el++e  +++ 
  KOO22235.1 14 KELFEDRAQMEVLKRRQAEHDAVVKEKDEKIAELEEELSKRRP 56
                6777778889999999999999**************9988765 PP

  == domain 2  score: 3.4 bits;  conditional E-value: 0.041
                 HH.......HHHHHHHHHHHHHHHHHHHHHHHHHHHHH... CS
       DUF16  43 vd....klgeqinkleqkvekqgekikelkveqkaqgeeln 79 
                 v+    + +    kl +++ ++g +i+el+   k ++e+++
  KOO22235.1 154 VAktkeQAQAAERKLSDEIATKGVQIRELQDGLKRRDEQIE 194
                 33222133334468889999999999999999999999987 PP

>> Spc29  Spindle Pole Component 29
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.9   3.3   0.00099       2.5     116     163 ..       6      53 ..       2      62 .. 0.89
   2 ?    3.3   2.0     0.025        63     120     170 ..     152     202 ..     100     229 .. 0.61

  Alignments for each domain:
  == domain 1  score: 7.9 bits;  conditional E-value: 0.00099
       Spc29 116 vkkivelekklddqkleIkeLkreleqqrtvnseLqekvaeleeevkr 163
                 +k+ + lek l + + +++ Lkr   ++ +v +e  ek+aeleee+ +
  KOO22235.1   6 MKQSQLLEKELFEDRAQMEVLKRRQAEHDAVVKEKDEKIAELEEELSK 53 
                 56667799************************************9865 PP

  == domain 2  score: 3.3 bits;  conditional E-value: 0.025
       Spc29 120 velekklddqkleIkeLkreleqqrtvnseLqekvaeleeevkrlaalehS 170
                   + k  ++ +   ++L  e+ +++  ++eLq+ +++ +e+++ l  +++ 
  KOO22235.1 152 ATVAKTKEQAQAAERKLSDEIATKGVQIRELQDGLKRRDEQIEFLMQVHDA 202
                 233344444455556677777777777888888888888888666665554 PP

>> NYD-SP28  Sperm tail
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.2   2.0   0.00048       1.2      58      85 ..      26      53 ..       6      56 .. 0.87
   2 ?    1.8   2.8     0.096   2.5e+02      12      62 ..      74     124 ..      70     130 .. 0.86
   3 ?    3.7   7.1     0.025        64      33      97 ..     138     200 ..     121     203 .. 0.75

  Alignments for each domain:
  == domain 1  score: 9.2 bits;  conditional E-value: 0.00048
    NYD-SP28 58 leeqkqaceelideKdklikelqeeLke 85
                l+  ++  +++++eKd+ i+el+eeL +
  KOO22235.1 26 LKRRQAEHDAVVKEKDEKIAELEEELSK 53
                455677899*****************87 PP

  == domain 2  score: 1.8 bits;  conditional E-value: 0.096
    NYD-SP28  12 eeeelrqerkekleeeaksseekfeeinekWreilrknkpqeLrkeleeqk 62 
                 eeee+  e k++ e + ++  +k+e +++k  ++++k ++ eL+k++ e++
  KOO22235.1  74 EEEEAVPEPKKEPEIDTAEILAKLELLKKKLMSTETKLTSAELQKAILELQ 124
                 6777777777888888899999*************************9886 PP

  == domain 3  score: 3.7 bits;  conditional E-value: 0.025
    NYD-SP28  33 ekfeeinekWreilrknkpqeLrkeleeqkqaceelideKdklikelqeeLkekdeqyvkalrkq 97 
                 + +e+i+++ re+l++      +++ +  +++ ++ i++K   i+elq+ Lk++deq +  ++ +
  KOO22235.1 138 RDLENIQARAREALAT--VAKTKEQAQAAERKLSDEIATKGVQIRELQDGLKRRDEQIEFLMQVH 200
                 5556666666666554..4556788888889999999********************99888766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (312 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2165  (0.120754); expected 358.6 (0.02)
Passed bias filter:                      791  (0.0441185); expected 358.6 (0.02)
Passed Vit filter:                        93  (0.00518713); expected 17.9 (0.001)
Passed Fwd filter:                        28  (0.00156172); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.72u 0.31s 00:00:01.03 Elapsed: 00:00:00.46
# Mc/sec: 2036.49
//
Query:       KOO22236.1  [L=514]
Description: NHL repeat containing protein, partial [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.2e-21   74.7   0.0    0.00017   21.5   0.0    5.5  5  NHL           NHL repeat
    3.4e-08   33.6   0.0        1.6    9.0   0.0    5.1  5  Arylesterase  Arylesterase
    5.1e-08   32.8   0.2       0.17   11.4   0.0    4.3  4  SGL           SMP-30/Gluconolactonase/LRE-like region
    5.3e-06   25.9   0.1     0.0005   19.8   0.0    2.7  2  EF-hand_6     EF-hand domain
    5.2e-05   23.6   0.0    9.3e-05   22.8   0.0    1.4  1  EF-hand_7     EF-hand domain pair
    9.2e-05   21.8   0.7       0.46    9.7   0.1    2.8  2  Lactonase     Lactonase, 7-bladed beta-propeller
    9.9e-05   21.6   0.0    0.00048   19.5   0.0    2.1  2  EF-hand_1     EF hand
    0.00028   20.9   0.0         12    6.1   0.0    4.8  5  Str_synth     Strictosidine synthase
      0.003   17.3   0.0      0.007   16.2   0.0    1.6  1  EF-hand_8     EF-hand domain pair
      0.009   15.5   0.0      0.024   14.1   0.0    1.7  1  EF-hand_5     EF hand
  ------ inclusion threshold ------
      0.015   14.5   0.6        3.6    6.6   0.0    3.1  3  DUF839        Bacterial protein of unknown function (DUF839)
       0.14   12.1   0.2        1.2    9.1   0.0    2.7  2  PD40          WD40-like Beta Propeller Repeat


Domain annotation for each model (and alignments):
>> NHL  NHL repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.0   0.0   0.00023      0.34       3      25 ..      42      65 ..      40      68 .. 0.87
   2 !   21.5   0.0   1.1e-07   0.00017       1      26 [.      96     122 ..      96     124 .. 0.95
   3 ?    5.7   0.0     0.011        16       3      27 ..     154     179 ..     152     180 .. 0.92
   4 !   15.8   0.0   6.9e-06      0.01       1      27 [.     215     242 ..     215     243 .. 0.95
   5 !   13.9   0.0   2.8e-05     0.042       1      23 [.     271     294 ..     271     297 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00023
                SEEEEEEE.TTTEEEEEECCCTEE CS
         NHL  3 yPhGvavd.snGdiyVaDsenhrv 25
                +P+G+av+ ++ +++VaD+++  +
  KOO22236.1 42 RPQGLAVTsDGAQLFVADTGSYKI 65
                7*******9999******998666 PP

  == domain 2  score: 21.5 bits;  conditional E-value: 1.1e-07
                 BSSEEEEEEE.TTTEEEEEECCCTEEE CS
         NHL   1 fnyPhGvavd.snGdiyVaDsenhrvq 26 
                 f+yP G+a++ ++G +++aD++n+ v+
  KOO22236.1  96 FSYPIGLALTaDDGTLFIADRYNNKVF 122
                 89*********************9986 PP

  == domain 3  score: 5.7 bits;  conditional E-value: 0.011
                 SEEEEEEE.TTTEEEEEECCCTEEEE CS
         NHL   3 yPhGvavd.snGdiyVaDsenhrvqv 27 
                  P  +av+ ++  +y+ ++  hrv+v
  KOO22236.1 154 GPIALAVSrDDTTVYIVEFTGHRVRV 179
                 6999********************98 PP

  == domain 4  score: 15.8 bits;  conditional E-value: 6.9e-06
                 BSSEEEEEEE.TTTEEEEEECCCTEEEE CS
         NHL   1 fnyPhGvavd.snGdiyVaDsenhrvqv 27 
                 fn+P+G a++ ++  +yV+D+++ r+++
  KOO22236.1 215 FNNPAGAALSpDGRTLYVSDFHSYRIRK 242
                 9************************987 PP

  == domain 5  score: 13.9 bits;  conditional E-value: 2.8e-05
                 BSSEEEEEEE.TTTEEEEEECCCT CS
         NHL   1 fnyPhGvavd.snGdiyVaDsenh 23 
                 fn+PhG++++ ++  +yVaD+ ++
  KOO22236.1 271 FNRPHGLTLSsDGAVLYVADYDSQ 294
                 9*********7777889***9876 PP

>> Arylesterase  Arylesterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.7   0.0     0.023        34      49      83 ..      36      70 ..      30      73 .. 0.86
   2 !    9.0   0.0    0.0011       1.6      49      84 ..      92     127 ..      85     129 .. 0.89
   3 ?    1.0   0.0      0.34     5e+02      54      82 ..     153     181 ..     145     184 .. 0.81
   4 ?    4.6   0.0     0.025        37      53      75 ..     215     237 ..     209     244 .. 0.86
   5 !    6.8   0.0    0.0053       7.9      50      73 ..     268     291 ..     261     299 .. 0.86

  Alignments for each domain:
  == domain 1  score: 4.7 bits;  conditional E-value: 0.023
  Arylesterase 49 vasglssanGInidadkkyiyvadilresihvmkk 83
                   a+++  + G+ + +d   ++vad    +i ++ +
    KOO22236.1 36 TAARFFRPQGLAVTSDGAQLFVADTGSYKIRRITV 70
                  588999******************98888876665 PP

  == domain 2  score: 9.0 bits;  conditional E-value: 0.0011
  Arylesterase  49 vasglssanGInidadkkyiyvadilresihvmkkh 84 
                    a+ +s + G+ + ad+  +++ad  +++++++   
    KOO22236.1  92 TAAAFSYPIGLALTADDGTLFIADRYNNKVFALSTS 127
                   6899***************************98765 PP

  == domain 3  score: 1.0 bits;  conditional E-value: 0.34
  Arylesterase  54 ssanGInidadkkyiyvadilresihvmk 82 
                   + +  + ++ d+  +y+ + + + + v+ 
    KOO22236.1 153 EGPIALAVSRDDTTVYIVEFTGHRVRVLH 181
                   556667899*************9997765 PP

  == domain 4  score: 4.6 bits;  conditional E-value: 0.025
  Arylesterase  53 lssanGInidadkkyiyvadilr 75 
                   ++ + G  +++d + +yv+d   
    KOO22236.1 215 FNNPAGAALSPDGRTLYVSDFHS 237
                   7889***************9765 PP

  == domain 5  score: 6.8 bits;  conditional E-value: 0.0053
  Arylesterase  50 asglssanGInidadkkyiyvadi 73 
                    ++++ + G+++++d  ++yvad 
    KOO22236.1 268 FASFNRPHGLTLSSDGAVLYVADY 291
                   57899*****************97 PP

>> SGL  SMP-30/Gluconolactonase/LRE-like region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.3   0.0    0.0084        13     135     165 ..      42      72 ..      35      90 .. 0.84
   2 !    9.1   0.1   0.00059      0.88     134     208 ..      97     167 ..      83     184 .. 0.75
   3 ?    0.6   0.0      0.23   3.4e+02     138     164 ..     157     183 ..     147     213 .. 0.71
   4 !   11.4   0.0   0.00012      0.17     135     208 ..     217     297 ..     199     306 .. 0.68

  Alignments for each domain:
  == domain 1  score: 5.3 bits;  conditional E-value: 0.0084
         SGL 135 ipNGlawspdgktlYlaDsltrkiwaydvda 165
                  p Gla+++dg +l++aD+   ki ++ v++
  KOO22236.1  42 RPQGLAVTSDGAQLFVADTGSYKIRRITVAT 72 
                 5779999999999999999999999988864 PP

  == domain 2  score: 9.1 bits;  conditional E-value: 0.00059
         SGL 134 tipNGlawspdgktlYlaDsltrkiwaydvdaeggklsnrrvfadlkkgegepDGlavDa..eGnvwvAvwgggkvv 208
                 + p Gla+++d+ tl++aD  ++k++a + +++        + + ++ + g+ DG+a +a  eG +  Av ++++ v
  KOO22236.1  97 SYPIGLALTADDGTLFIADRYNNKVFALSTSTNAV------TTVAGTGALGNTDGAASTAtlEGPIALAVSRDDTTV 167
                 56779999999999999999999999988864444......334455556779999998888888888887666544 PP

  == domain 3  score: 0.6 bits;  conditional E-value: 0.23
         SGL 138 GlawspdgktlYlaDsltrkiwaydvd 164
                 +la+s+d++t+Y+++ + +++ + + +
  KOO22236.1 157 ALAVSRDDTTVYIVEFTGHRVRVLHRS 183
                 789999999999999888888776665 PP

  == domain 4  score: 11.4 bits;  conditional E-value: 0.00012
         SGL 135 ipNGlawspdgktlYlaDsltrkiwaydvda.......eggklsnrrvfadlkkgegepDGlavDaeGnv.wvAvwgggkvv 208
                  p G a+spdg+tlY+ D +  +i ++  ++        +g+ + ++  a ++ + ++p Gl++ ++G v +vA ++++k++
  KOO22236.1 217 NPAGAALSPDGRTLYVSDFHSYRIRKIMTSSglvstlsGSGTPGGADGAAAFASF-NRPHGLTLSSDGAVlYVADYDSQKLR 297
                 57799*************9999999987753111111123334444444444444.46889999998875478888777765 PP

>> EF-hand_6  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.8   0.0   3.4e-07    0.0005       4      28 ..     347     371 ..     344     378 .. 0.89
   2 ?    3.1   0.0     0.077   1.2e+02       8      27 ..     387     406 ..     382     412 .. 0.85

  Alignments for each domain:
  == domain 1  score: 19.8 bits;  conditional E-value: 3.4e-07
   EF-hand_6   4 eaFklfDkdgdGkidaeElrkalrk 28 
                 +aF+ fD d++G i+ +El +alr+
  KOO22236.1 347 QAFDCFDADHSGLISCAELHDALRH 371
                 89**********************5 PP

  == domain 2  score: 3.1 bits;  conditional E-value: 0.077
   EF-hand_6   8 lfDkdgdGkidaeElrkalr 27 
                  +D + dG+ d + +  + r
  KOO22236.1 387 RYDDTPDGQMDLSKFAELVR 406
                 79*********999988777 PP

>> EF-hand_7  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.8   0.0   6.2e-08   9.3e-05       6      71 .]     347     406 ..     343     406 .. 0.94

  Alignments for each domain:
  == domain 1  score: 22.8 bits;  conditional E-value: 6.2e-08
   EF-hand_7   6 eaFkelDtdgdgyldkeellrllrkifqgagegsklsdeelellfkefDtdkdGvisfdEFlklyr 71 
                 +aF+ +D d++g ++ +el+++lr      + g +ls     +++   D + dG+++++ F +l+r
  KOO22236.1 347 QAFDCFDADHSGLISCAELHDALR------HYGIDLSGPGAAAVLARYDDTPDGQMDLSKFAELVR 406
                 68**********************......99***9*999*********************99875 PP

>> Lactonase  Lactonase, 7-bladed beta-propeller
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.7   0.1   0.00031      0.46      20     129 ..      80     196 ..      60     208 .. 0.75
   2 !    9.1   0.0   0.00046      0.69     244     317 ..     216     298 ..     205     313 .. 0.77

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 0.00031
                 EETTTS-EEEEEEEEESS---SEEE-TTSSEEEEEET.S........TTTEEEEEEEETTTTEEEEEEEEE...SSS-EEEEEE-TTSSEEEEEETTTT CS
   Lactonase  20 ldtetgkltplelvaelenPsyLalspdgktlYavnetg........eeggvsafaidkdsgeltllnkvss..egaspchlsvdedgkllavAnYsgg 108
                  +  tg+ + ++++a+ + P  Lal +d+ tl+ +++ +        +++ v+++a    +g+l  ++ + s    + p+ l+v++d   +++ +++g 
  KOO22236.1  80 GSGVTGNSDGIGTAAAFSYPIGLALTADDGTLFIADRYNnkvfalstSTNAVTTVA---GTGALGNTDGAAStaTLEGPIALAVSRDDTTVYIVEFTGH 175
                 4666888899999999999999**************99877777533333333333...33555555544443477899******************** PP

                 EEEEEEB.TTSEBESECEEEE CS
   Lactonase 109 svsvfpldadgslkeasqvlk 129
                 +v+v++ ++  s+++++++l 
  KOO22236.1 176 RVRVLHRSSVISIQSSVSTLA 196
                 ****99999888888877765 PP

  == domain 2  score: 9.1 bits;  conditional E-value: 0.00046
                 --EEEEEE-TTSSEEEEEETS..........STEEEEEEE-TTT--EEEEEEEE-SSS.--EEEE-TTSSEEEEEETTTTEEEE CS
   Lactonase 244 nsaaeIrlspdgkflyvSnRg..........adsiavfavdeadgtltlveevstegkfPRdfaldpsgklllvanqksdnvtv 317
                 n +a  +lspdg+ lyvS+            +  +++++ +   g      ++++  + P  ++l+++g +l+va+ +s+++ +
  KOO22236.1 216 NNPAGAALSPDGRTLYVSDFHsyrirkimtsSGLVSTLSGSGTPGGADGAAAFASFNR-PHGLTLSSDGAVLYVADYDSQKLRS 298
                 5677778999999999998777788999977777777777777777777777777666.9999999999999999999988754 PP

>> EF-hand_1  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.5   0.0   3.2e-07   0.00048       4      28 ..     347     371 ..     344     372 .. 0.92
   2 ?   -1.2   0.0       1.3   1.9e+03      14      28 ..     393     407 ..     385     408 .. 0.86

  Alignments for each domain:
  == domain 1  score: 19.5 bits;  conditional E-value: 3.2e-07
                 HHHHHHTTTSSSEEEHHHHHHHHHH CS
   EF-hand_1   4 eiFrefDkDgdGkIdfeEfkellkk 28 
                 ++F+ fD D++G I+  E+ ++l++
  KOO22236.1 347 QAFDCFDADHSGLISCAELHDALRH 371
                 79********************986 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 1.3
                 SSEEEHHHHHHHHHH CS
   EF-hand_1  14 dGkIdfeEfkellkk 28 
                 dG++d++ f el+++
  KOO22236.1 393 DGQMDLSKFAELVRD 407
                 9*****999999886 PP

>> Str_synth  Strictosidine synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.7   0.0     0.046        69      59      83 ..      43      67 ..      37      72 .. 0.86
   2 ?   -2.3   0.0       3.3     5e+03      57      75 ..      97     115 ..      94     129 .. 0.75
   3 ?    2.2   0.0      0.13   1.9e+02      55      81 ..     151     177 ..     146     183 .. 0.88
   4 !    6.1   0.0    0.0081        12      58      86 ..     217     245 ..     212     247 .. 0.87
   5 ?    1.7   0.0      0.19   2.9e+02      59      80 ..     274     295 ..     268     303 .. 0.81

  Alignments for each domain:
  == domain 1  score: 3.7 bits;  conditional E-value: 0.046
   Str_synth 59 anGialsedgsfvlvcetamkrisr 83
                + G+a+++dg  + v++t   +i r
  KOO22236.1 43 PQGLAVTSDGAQLFVADTGSYKIRR 67
                89****************9999877 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 3.3
   Str_synth  57 yfanGialsedgsfvlvce 75 
                 +++ G+al+ d+  + +++
  KOO22236.1  97 SYPIGLALTADDGTLFIAD 115
                 5788999999887776665 PP

  == domain 3  score: 2.2 bits;  conditional E-value: 0.13
   Str_synth  55 kLyfanGialsedgsfvlvcetamkri 81 
                  L ++  +a+s+d++ v ++e++ +r+
  KOO22236.1 151 TLEGPIALAVSRDDTTVYIVEFTGHRV 177
                 57888899**************99986 PP

  == domain 4  score: 6.1 bits;  conditional E-value: 0.0081
   Str_synth  58 fanGialsedgsfvlvcetamkrisrywi 86 
                  ++G als+dg  + v+++   ri +  +
  KOO22236.1 217 NPAGAALSPDGRTLYVSDFHSYRIRKIMT 245
                 589********************988655 PP

  == domain 5  score: 1.7 bits;  conditional E-value: 0.19
   Str_synth  59 anGialsedgsfvlvcetamkr 80 
                 + G++ls+dg  + v++   ++
  KOO22236.1 274 PHGLTLSSDGAVLYVADYDSQK 295
                 78*********99999988776 PP

>> EF-hand_8  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.0   4.7e-06     0.007      32      54 ..     349     371 ..     346     372 .. 0.94

  Alignments for each domain:
  == domain 1  score: 16.2 bits;  conditional E-value: 4.7e-06
   EF-hand_8  32 frefDtdgdGkisfeEFcvller 54 
                 f++fD d++G is+ E ++ l +
  KOO22236.1 349 FDCFDADHSGLISCAELHDALRH 371
                 9******************9987 PP

>> EF-hand_5  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.1   0.0   1.6e-05     0.024       3      21 ..     347     365 ..     345     369 .. 0.86

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 1.6e-05
                 HHHHHH-SS-SSCE-HHHH CS
   EF-hand_5   3 dtFqaiDlNgDGkIskeEL 21 
                 ++F+++D++++G Is  EL
  KOO22236.1 347 QAFDCFDADHSGLISCAEL 365
                 56*************8887 PP

>> DUF839  Bacterial protein of unknown function (DUF839)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.8   0.1     0.068     1e+02     425     522 ..      86     190 ..      64     191 .. 0.70
   2 ?    2.0   0.0     0.059        89     504     519 ..     218     233 ..     200     237 .. 0.79
   3 ?    6.6   0.0    0.0024       3.6     430     488 ..     266     322 ..     249     346 .. 0.80

  Alignments for each domain:
  == domain 1  score: 1.8 bits;  conditional E-value: 0.068
      DUF839 425 asaessegndlespDnlafd.paGrlwiatDgsgskde....llgvtaeGkvynlarndGnn..vltsdaargevkrfltepegsEvtGvtfsPdgktl 516
                 +s ++   +++++p +la++ + G l ia+  +++       +  vt+   + +l+++dG     + +++ + +v r  t     E+tG  +   ++  
  KOO22236.1  86 NSDGIGTAAAFSYPIGLALTaDDGTLFIADRYNNKVFAlstsTNAVTTVAGTGALGNTDGAAstATLEGPIALAVSRDDTTVYIVEFTGHRVRVLHRSS 184
                 5667777889999999998626788888755555433344443333333334445555665576777999999999999999999****9999999999 PP

      DUF839 517 fvnvqh 522
                  +++q+
  KOO22236.1 185 VISIQS 190
                 999996 PP

  == domain 2  score: 2.0 bits;  conditional E-value: 0.059
      DUF839 504 vtGvtfsPdgktlfvn 519
                  +G++ sPdg+tl+v+
  KOO22236.1 218 PAGAALSPDGRTLYVS 233
                 58*************8 PP

  == domain 3  score: 6.6 bits;  conditional E-value: 0.0024
      DUF839 430 segndlespDnlafdpaGrlwiatDgsgskdellgvtaeGkvynlarndGnnvltsdaa 488
                  + + ++ p +l++++ G ++ + D +++k +    ta G+++ la  dG+    +++a
  KOO22236.1 266 AAFASFNRPHGLTLSSDGAVLYVADYDSQKLR-SVITATGETSSLA-GDGSFGISDGPA 322
                 5567899*********************9887.77899*******8.678874444444 PP

>> PD40  WD40-like Beta Propeller Repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.1       4.1   6.1e+03       6      17 ..      86      97 ..      86      97 .. 0.91
   2 ?    9.1   0.0   0.00083       1.2      13      26 ..     220     233 ..     212     238 .. 0.82

  Alignments for each domain:
  == domain 1  score: -2.6 bits;  conditional E-value: 4.1
                SSSS.EEEEEE- CS
        PD40  6 ntpgnegaPsfS 17
                n++g+ +a +fS
  KOO22236.1 86 NSDGIGTAAAFS 97
                899999999998 PP

  == domain 2  score: 9.1 bits;  conditional E-value: 0.00083
                 EEEE-TTSSEEEEE CS
        PD40  13 aPsfSPDGkrlaFs 26 
                 + ++SPDG++l+ s
  KOO22236.1 220 GAALSPDGRTLYVS 233
                 6799*******965 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (514 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       430  (0.0239835); expected 358.6 (0.02)
Passed bias filter:                      307  (0.0171231); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.59u 0.26s 00:00:00.85 Elapsed: 00:00:00.44
# Mc/sec: 3514.29
//
Query:       KOO22237.1  [L=192]
Description: hypothetical protein Ctob_006379, partial [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
  ------ inclusion threshold ------
       0.18   11.6   0.0       0.33   10.8   0.0    1.4  1  Adeno_E3_CR2  Adenovirus E3 region protein CR2


Domain annotation for each model (and alignments):
>> Adeno_E3_CR2  Adenovirus E3 region protein CR2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   1.8e-05      0.33       9      35 ..      83     108 ..      82     110 .. 0.75

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 1.8e-05
  Adeno_E3_CR2   9 ivaVvvGlaiIiicmlyYaCcYrkhra 35 
                   ++aV++  + + + +l+ aC Yr+hr+
    KOO22237.1  83 VAAVLASSVALLL-LLLLACGYRRHRR 108
                   6788777665554.6677*******95 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (192 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       454  (0.0253221); expected 358.6 (0.02)
Passed bias filter:                      368  (0.0205254); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.25s 00:00:00.65 Elapsed: 00:00:00.40
# Mc/sec: 1423.12
//
Query:       KOO22238.1  [L=273]
Description: ser thr protein kinase, partial [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.4e-07   31.3   0.1        9.5    6.0   0.0    7.8  9  Mitoc_L55  Mitochondrial ribosomal protein L55
     0.0061   16.3   0.0          4    7.2   0.0    2.7  2  Nrap_D5    Nrap protein PAP/OAS1-like domain 5
  ------ inclusion threshold ------
      0.032   14.6   0.0        1.7    9.1   0.0    2.5  2  DUF1041    Domain of Unknown Function (DUF1041)


Domain annotation for each model (and alignments):
>> Mitoc_L55  Mitochondrial ribosomal protein L55
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.0   0.0    0.0016       9.5      46      65 ..       1      20 [.       1      34 [. 0.76
   2 ?    2.4   0.0     0.021   1.2e+02      45      59 ..      32      46 ..      27      55 .. 0.84
   3 ?    2.7   0.0     0.017     1e+02      39      64 ..      49      74 ..      40      84 .. 0.81
   4 ?    2.5   0.0     0.019   1.1e+02      37      63 ..      93     119 ..      84     123 .. 0.84
   5 ?    0.2   0.0       0.1   6.1e+02      47      59 ..     126     138 ..     120     150 .. 0.79
   6 ?    1.4   0.0     0.042   2.5e+02      46      59 ..     148     161 ..     140     172 .. 0.84
   7 ?    1.9   0.0      0.03   1.8e+02      46      64 ..     171     189 ..     159     199 .. 0.88
   8 ?    0.4   0.0     0.086   5.2e+02      47      67 ..     195     215 ..     188     222 .. 0.86
   9 ?    1.8   0.0     0.032   1.9e+02      40      58 ..     234     252 ..     219     263 .. 0.74

  Alignments for each domain:
  == domain 1  score: 6.0 bits;  conditional E-value: 0.0016
   Mitoc_L55 46 llvkqDGsTikiryrEPrri 65
                +lv++ GsTi +  + P + 
  KOO22238.1  1 MLVRPAGSTIDVIEEQPWKA 20
                79**********99999764 PP

  == domain 2  score: 2.4 bits;  conditional E-value: 0.021
   Mitoc_L55 45 vllvkqDGsTikiry 59
                ++lv++ Gs i ++ 
  KOO22238.1 32 TMLVRPAGSSIDVNE 46
                79*********9975 PP

  == domain 3  score: 2.7 bits;  conditional E-value: 0.017
   Mitoc_L55 39 yarlYpvllvkqDGsTikiryrEPrr 64
                + +     lv++ Gs i ++ + P++
  KOO22238.1 49 HSKALSPRLVRPAGSWIDVNEEQPQK 74
                555555679***********999986 PP

  == domain 4  score: 2.5 bits;  conditional E-value: 0.019
   Mitoc_L55  37 qayarlYpvllvkqDGsTikiryrEPr 63 
                 +++ + +  +l++ +Gs i ++ + P 
  KOO22238.1  93 EHHSKAFTPMLMRLEGSSIDVNLEQPS 119
                 5677888999************99995 PP

  == domain 5  score: 0.2 bits;  conditional E-value: 0.1
   Mitoc_L55  47 lvkqDGsTikiry 59 
                 lv++ Gs i ++ 
  KOO22238.1 126 LVRPAGSSIDVNE 138
                 9********9974 PP

  == domain 6  score: 1.4 bits;  conditional E-value: 0.042
   Mitoc_L55  46 llvkqDGsTikiry 59 
                 +lv++ Gs i ++ 
  KOO22238.1 148 MLVRPAGSSIDVNE 161
                 89********9975 PP

  == domain 7  score: 1.9 bits;  conditional E-value: 0.03
   Mitoc_L55  46 llvkqDGsTikiryrEPrr 64 
                  lv++ Gs i ++ + P++
  KOO22238.1 171 RLVRPAGSWIDVNEEQPQK 189
                 59***********999986 PP

  == domain 8  score: 0.4 bits;  conditional E-value: 0.086
   Mitoc_L55  47 lvkqDGsTikiryrEPrrila 67 
                 lv+  Gs i +  + P++ ++
  KOO22238.1 195 LVRLAGSSIDVIEQQPQKAFT 215
                 89999***********98764 PP

  == domain 9  score: 1.8 bits;  conditional E-value: 0.032
   Mitoc_L55  40 arlYpvllvkqDGsTikir 58 
                  +    +lv++ Gs i + 
  KOO22238.1 234 SKALSPMLVRPAGSAIDVI 252
                 5555669*********985 PP

>> Nrap_D5  Nrap protein PAP/OAS1-like domain 5
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.0   0.0    0.0015       9.1     123     151 ..      69      97 ..      59     107 .. 0.82
   2 !    7.2   0.0   0.00067         4     123     150 ..     184     211 ..     174     227 .. 0.83

  Alignments for each domain:
  == domain 1  score: 6.0 bits;  conditional E-value: 0.0015
                 --HH...HHHHHHHHHHHHHHHHHHH... CS
     Nrap_D5 123 kekpskvvaaRltaLAkaalelleekevs 151
                 +e+p+k    Rl++LA ++++++ee++++
  KOO22238.1  69 EEQPQKARSPRLVRLAGSSIDVIEEHHSK 97 
                 789**********************9654 PP

  == domain 2  score: 7.2 bits;  conditional E-value: 0.00067
                 --HH...HHHHHHHHHHHHHHHHHHH.. CS
     Nrap_D5 123 kekpskvvaaRltaLAkaalelleekev 150
                 +e+p+k  + Rl++LA ++++++e++ +
  KOO22238.1 184 EEQPQKAHLPRLVRLAGSSIDVIEQQPQ 211
                 799*********************9953 PP

>> DUF1041  Domain of Unknown Function (DUF1041)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.3   0.0     0.018   1.1e+02      39      70 ..      60     100 ..      25     123 .. 0.68
   2 ?    9.1   0.0   0.00028       1.7      39      77 ..     172     222 ..     136     242 .. 0.70

  Alignments for each domain:
  == domain 1  score: 3.3 bits;  conditional E-value: 0.018
     DUF1041  39 e........eegtskkkleeltkLaeLvievlqqdk.ehya 70 
                          ee+++k +   l +La   i+v+++ + + ++
  KOO22238.1  60 PagswidvnEEQPQKARSPRLVRLAGSSIDVIEEHHsKAFT 100
                 04444444356688889999999999999999875313444 PP

  == domain 2  score: 9.1 bits;  conditional E-value: 0.00028
     DUF1041  39 e...........eegtskkkleeltkLaeLvievlqqd.kehyaevleafa 77 
                             ee+++k +l  l +La   i+v++q  ++ ++++l  +a
  KOO22238.1 172 LvrpagswidvnEEQPQKAHLPRLVRLAGSSIDVIEQQpQKAFTPMLMRLA 222
                 0334444555546779*******************8763678888776665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (273 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       185  (0.0103185); expected 358.6 (0.02)
Passed bias filter:                      161  (0.00897987); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.47u 0.25s 00:00:00.72 Elapsed: 00:00:00.44
# Mc/sec: 1875.10
//
Query:       KOO22239.1  [L=1426]
Description: c2 domain containing protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.7e-62  207.0   0.0    1.1e-13   51.3   0.0    7.2  7  C2        C2 domain
     0.0011   18.8   0.0        7.1    6.4   0.0    3.3  3  DOCK-C2   C2 domain in Dock180 and Zizimin proteins


Domain annotation for each model (and alignments):
>> C2  C2 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.5   0.1   2.3e-08   0.00021       4      94 ..      63     156 ..      60     165 .. 0.82
   2 !   51.3   0.0   1.3e-17   1.1e-13       3     102 ..     228     329 ..     226     330 .. 0.92
   3 !    4.8   0.0    0.0037        33       5      90 ..     399     490 ..     395     501 .. 0.77
   4 !   50.2   0.0   2.8e-17   2.5e-13       3      88 ..     549     636 ..     547     651 .. 0.92
   5 !    3.9   0.0    0.0075        67      33      90 ..     727     789 ..     692     802 .. 0.75
   6 !   37.7   0.0   2.2e-13     2e-09       6      91 ..     979    1068 ..     974    1080 .. 0.85
   7 !   27.3   0.0   3.7e-10   3.4e-06       2      94 ..    1127    1235 ..    1126    1244 .. 0.77

  Alignments for each domain:
  == domain 1  score: 21.5 bits;  conditional E-value: 2.3e-08
                 EEEEEEEESSSSSSTTSSCEEEEEEEEECEEEEEE-SCSSSSSSEEEEEEEEEESC....HTTSEEEEEEEEECSSSTEEEEEEEEEEGHHHHTT CS
          C2   4 evtvieAknLpnkdkkgssdpyvkvsldgkqkakTrviknslnPvWnekftfevae....leeakLeveVfdndrlskddfiGkveiplstllsg 94 
                  v+vieAk++++   +  +d  v++s+ +++++ ++v+++s++ +++  +++++       ++ak+ ++V++ ++  ++d++G  e+pl +l ++
  KOO22239.1  63 LVHVIEAKDIKAP-PGVIPDLIVTASVGNQTTKYSQVVRRSTSCKFDTWLEWKMMMtydeMKKAKVVLTVLNANTDARSDVLGMYEVPLLQLRKQ 156
                 699*******777.5778*********66666667799888899998888887777777899**********9999************9995443 PP

  == domain 2  score: 51.3 bits;  conditional E-value: 1.3e-17
                 EEEEEEEEESSSSSSTTSSCEEEEEEEEECEEEEEE-SCSSSSSSEEEEEEEEEESC.HTTSEEEEEEEEECSSSTEEEEEEEEEEGHH.HHTTHHHHE CS
          C2   3 levtvieAknLpnkdkkgssdpyvkvsldgkqkakTrviknslnPvWnekftfevae.leeakLeveVfdndrlskddfiGkveiplst.llsgeeaeg 99 
                 l + +++ ++Lpn+d  g +d++v+v l g++  kT+v  nslnP++ne +++++     ++kL ++V d+d+ + d ++  + +++++ l +ge +  
  KOO22239.1 228 LFIAIYRIEGLPNMDSYGATDAFVSVRLPGESAMKTKVCANSLNPTYNELLRLPIMLpIFNDKLVISVSDYDQGGYDTLVADIVLSVNEiLRRGEIKPY 326
                 7899*********************************99**************999989**************99999***********6666666667 PP

                 EEE CS
          C2 100 wyp 102
                 w++
  KOO22239.1 327 WVN 329
                 766 PP

  == domain 3  score: 4.8 bits;  conditional E-value: 0.0037
                 EEEEEEESSSSSSTTSSCEEEEEEEEECEEEEEE-SC.SSSSSSEEEEEEEEEESC.....HTTSEEEEEEEEECSS.STEEEEEEEEEEGHH CS
          C2   5 vtvieAknLpnkdkkgssdpyvkvsldgkqkakTrvi.knslnPvWnekftfevae.....leeakLeveVfdndrl.skddfiGkveiplst 90 
                 +  ++A ++ +  +  +s+  +++++ g+++  T  i +n    vW+e+f+    e      ++  + + V+    + + ++ +G ++++l++
  KOO22239.1 399 FDLHRASQVDPVSAPDNSQIRIELQVGGTTMESTPCIvENG-LVVWDEMFEERRVElpsdlAQCPDIFINVYFTTIVaKTEQRLGYIRLDLED 490
                 55677777766766677888899999899999999663666.49***999753333355999**********98887577789******9997 PP

  == domain 4  score: 50.2 bits;  conditional E-value: 2.8e-17
                 EEEEEEEEESSSSSSTTSSCEEEEEEEEECEEEEEE-SCSSSSSSEEEEEEEEEESC....HTTSEEEEEEEEECSSSTEEEEEEEEEEG CS
          C2   3 levtvieAknLpnkdkkgssdpyvkvsldgkqkakTrviknslnPvWnekftfevae....leeakLeveVfdndrlskddfiGkveipl 88 
                 l+ ++++A+nLp +d  g  +p+++v+l +   ++T+v + ++nP+W e++++e++     + +a + v+++d+d  ++d++iG++ ++l
  KOO22239.1 549 LRGHIYQARNLPSMDEDGLANPFAVVTL-HGFAGQTKVAEPTCNPQWYETVRVELELpiptPTTANILVRLYDQDE-GGDQLIGRCLVSL 636
                 7779************************.********999999**********99988999***************.********99886 PP

  == domain 5  score: 3.9 bits;  conditional E-value: 0.0075
                 EEEEEE-SCSSSSSS..EEEEEEEEEESC....HTTSEEEEEEEEECSSSTEEEEEEEEEEGHH CS
          C2  33 kqkakTrviknslnP..vWnekftfevae....leeakLeveVfdndrlskddfiGkveiplst 90 
                 +++ +T v ++   P   + e++++  +     l + +L v+Vfdn r +   ++ +++++l+ 
  KOO22239.1 727 SKVMRTAVSSKPSGPdaNFLETLVIRTRLpeelLYCPQLNVRVFDNVR-GATPVVAQCSFDLAP 789
                 56777776644433433677888885544558999***********99.999999999999986 PP

  == domain 6  score: 37.7 bits;  conditional E-value: 2.2e-13
                  EEEEEESSSSSSTTSSCEEEEEEEE...ECEEEEEE-.SCSSSSSSEEEEEEEEEESCHTTSEEEEEEEEECSSSTEEEEEEEEEEGHH.H CS
          C2    6 tvieAknLpnkdkkgssdpyvkvsl...dgkqkakTr.viknslnPvWnekftfevaeleeakLeveVfdndrlskddfiGkveiplst.l 91  
                  +v+++ + ++kd +g sdpy +v     +++ +  ++ v+++++nP +   f+++   + + +L++eV+d+d+ s+ ++iG + i++++ l
  KOO22239.1  979 YVTRGIKFAPKDTNGLSDPYLVVRNgthKHNIIDDSKnVVRSTVNPNFYRCFELPTMVPGNPVLTIEVWDEDS-SGAQLIGATVIDIENrL 1068
                  67788888999**************886555556666689**************88889**************.************99843 PP

  == domain 7  score: 27.3 bits;  conditional E-value: 3.7e-10
                  EEEEEEEEEESSSSSST......TSSCEEEEEEEE.ECEEEEEE-S.........CSSSSSSEEEEEEEEEESC.HTTSEEEEEEEEECSSSTEEEE CS
          C2    2 klevtvieAknLpnkdk......kgssdpyvkvsl.dgkqkakTrv.........iknslnPvWnekftfevae.leeakLeveVfdndrlskddfi 81  
                  +l+v v + k+L    k       gs d++v++++  +  +++T+v          k++    +n +f+f+v+    +++L+v+++d+++++ +d +
  KOO22239.1 1127 QLRVVVWSVKELVLEGKnqfierDGSADVFVTAKVgGDLMMQETDVhygarasagSKQT-TANFNWRFVFQVPLpVRQSRLQVQIWDERSTGANDAL 1222
                  68888899999844422346677999*********855566666666666655433444.7888889999999888**************9****** PP

                  EEEEEEGHHHHTT CS
          C2   82 Gkveiplstllsg 94  
                   +++++l++l ++
  KOO22239.1 1223 AECTLQLRQLYEN 1235
                  ********97665 PP

>> DOCK-C2  C2 domain in Dock180 and Zizimin proteins
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.4   0.0    0.0008       7.1      23     125 ..      54     171 ..      43     204 .. 0.68
   2 !    3.0   0.0    0.0086        77      53      86 ..     255     288 ..     234     298 .. 0.85
   3 !    5.0   0.0    0.0021        19      61      88 ..     583     612 ..     580     643 .. 0.74

  Alignments for each domain:
  == domain 1  score: 6.4 bits;  conditional E-value: 0.0008
     DOCK-C2  23 kssakniqvtvevrds...dger....lekaiylgsgeelvsefrsvvlyhnkqptfne..eiKialpieltekhHLlFtfrhvsceekkk........ 104
                   + k + v v v ++   +  +    ++++i+ +++   +++ +s v+ ++++ +f    e K+    ++++k+ +++t+ + +++++++        
  KOO22239.1  54 GPKPKAFRVLVHVIEAkdiK--AppgvIPDLIV-TASVGNQTTKYSQVVRRSTSCKFDTwlEWKMMMTYDEMKKAKVVLTVLNANTDARSDvlgmyevp 149
                 34556666777777775332..34466889999.55566788888999999988877754478**********************97654455555555 PP

     DOCK-C2 105 ..ekdkeeeekpfgyaflpLlke 125
                   +  k++      +++l L+k+
  KOO22239.1 150 llQLRKQP-MGEYFMTWLALYKD 171
                 54333323.44444555555553 PP

  == domain 2  score: 3.0 bits;  conditional E-value: 0.0086
     DOCK-C2  53 eelvsefrsvvlyhnkqptfneeiKialpielte 86 
                  + +s +++ v  ++ +pt+ne +++ + +  ++
  KOO22239.1 255 LPGESAMKTKVCANSLNPTYNELLRLPIMLPIFN 288
                 5678999*******************99887775 PP

  == domain 3  score: 5.0 bits;  conditional E-value: 0.0021
     DOCK-C2  61 svvlyhnkqptfneeiKi..alpieltekh 88 
                 + v++ + +p+++e++++  +lpi +  ++
  KOO22239.1 583 TKVAEPTCNPQWYETVRVelELPIPTPTTA 612
                 567778889********9334555554555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1426 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       315  (0.0175693); expected 358.6 (0.02)
Passed bias filter:                      278  (0.0155056); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.80u 0.29s 00:00:01.09 Elapsed: 00:00:00.46
# Mc/sec: 9291.72
//
Query:       KOO22240.1  [L=203]
Description: hypothetical protein Ctob_006377 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    4.7e-15   56.2   0.1    6.5e-15   55.8   0.1    1.2  1  2OG-FeII_Oxy_3  2OG-Fe(II) oxygenase superfamily


Domain annotation for each model (and alignments):
>> 2OG-FeII_Oxy_3  2OG-Fe(II) oxygenase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.8   0.1   3.7e-19   6.5e-15       2      96 .]      61     185 ..      60     185 .. 0.82

  Alignments for each domain:
  == domain 1  score: 55.8 bits;  conditional E-value: 3.7e-19
                     EEEEE-TT-EEEEE-SS--.............--TT.-.EEEEEEEEE....ET-B--......EEE......................---TT- CS
  2OG-FeII_Oxy_3   2 qvlrygegqeykpHvDnfe.............keegsgqrrltvllyLnekeseeGGe......lelyekdk............eavkikpkkgr 65 
                      ++ry++gq+y +H D  +              +  sg r+lt+++yL+  + +eGGe                           + k++p+kg+
      KOO22240.1  61 EFVRYEAGQHYVWHPDEYSwqrkgwsaeradpVHVLSGPRVLTFFMYLS--DVDEGGEtgfmgtR------AgaskvaptpaeeAKLKVRPEKGK 147
                     689*************999********999996666699*********6..4589***5555550......4555555555666778889***** PP

                     EEEEE-..B-T..........EEE--B.-SS-EEEEEEEEE CS
  2OG-FeII_Oxy_3  66 lvlFesdellp..........HevlpvtkggeRlsltgwir 96 
                     ++l+ + +  +          H++ pv++ g +++ t+w++
      KOO22240.1 148 AILWANMR--DewrtaepaavHRAFPVRR-GVKWASTLWVH 185
                     ******54..346**************66.5********98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (203 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       307  (0.0171231); expected 358.6 (0.02)
Passed bias filter:                      278  (0.0155056); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.25s 00:00:00.62 Elapsed: 00:00:00.39
# Mc/sec: 1560.96
//
Query:       KOO22241.1  [L=2204]
Description: surface antigen -like protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.3e-98  324.2   7.7    2.2e-37  127.9   4.4    3.4  3  LRR_5            BspA type Leucine rich repeat region (6 copi
    5.3e-28   98.1   0.0    1.5e-17   63.9   0.0    2.1  2  Pkinase          Protein kinase domain
    1.2e-27   95.2  15.1     0.0015   18.1   0.0    8.7  8  Kelch_1          Kelch motif
    4.8e-25   87.1  14.3    0.00098   19.1   0.0    8.7  8  Kelch_5          Kelch motif
    1.7e-23   82.4  30.8      4e-07   30.2   0.1    8.9  9  Kelch_3          Galactose oxidase, central domain
    8.4e-22   76.3  15.4     0.0035   17.3   0.0    8.2  8  Kelch_2          Kelch motif
    9.1e-20   70.2  13.6     0.0015   18.8   0.0    8.6  8  Kelch_6          Kelch motif
    8.8e-18   64.7   0.0    4.3e-17   62.4   0.0    1.9  1  Methyltr_RsmB-F  16S rRNA methyltransferase RsmB/F
    2.7e-17   62.5  23.9    0.00011   22.1   0.0    7.9  7  Kelch_4          Galactose oxidase, central domain
    8.9e-16   57.4   0.0      0.043   13.6   0.0    7.6 10  LRR_8            Leucine rich repeat
      2e-11   44.1   0.1    4.9e-11   42.9   0.1    1.7  1  SAM_1            SAM domain (Sterile alpha motif)
    1.5e-08   34.6   0.1    3.7e-08   33.4   0.1    1.6  1  SAM_2            SAM domain (Sterile alpha motif)
    4.7e-07   29.4   0.0     0.0085   15.4   0.0    2.4  3  Pkinase_Tyr      Protein tyrosine kinase
  ------ inclusion threshold ------
        1.4    9.5   8.4        4.6    7.8   0.0    5.6  5  LRR_4            Leucine Rich repeats (2 copies)


Domain annotation for each model (and alignments):
>> LRR_5  BspA type Leucine rich repeat region (6 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  123.6   1.5   3.6e-39   4.6e-36       6     128 .]    1882    2006 ..    1878    2006 .. 0.98
   2 !  127.9   4.4   1.7e-40   2.2e-37       1     127 [.    1992    2120 ..    1992    2120 .. 0.99
   3 !   96.5   0.1   8.8e-31   1.1e-27       1      88 [.    2107    2195 ..    2107    2200 .. 0.85

  Alignments for each domain:
  == domain 1  score: 123.6 bits;  conditional E-value: 3.6e-39
       LRR_5    6 yaFync.nltsitipssvtsIgeyaFsnctslksitlpsslteigsyaFsncssltsitipssltsigeyaFsncsslkeitlpsnlttigssaFsn 101 
                  +aF++  ++tsi +p  +tsIge+aF++c+sl+sitlp sl +ig +aF +c s+tsi++p slts+g+ aF +cssl++i+lp  lt++g+saF+ 
  KOO22241.1 1882 NAFRDDtSMTSIALPAGLTSIGESAFEDCSSLTSITLPASLMSIGVNAFWGCCSMTSIELPASLTSLGKCAFCGCSSLTSIQLPAGLTSLGESAFEF 1978
                  79*9977*********************************************9******************************************** PP

       LRR_5  102 c.slesitipssvtkigsnaFsncsslk 128 
                  c sl+si++p+ +t+igs aF +cssl+
  KOO22241.1 1979 CsSLTSIELPAGLTSIGSCAFISCSSLT 2006
                  *9**********************9985 PP

  == domain 2  score: 127.9 bits;  conditional E-value: 1.7e-40
       LRR_5    1 teIgsyaFync.nltsitipssvtsIgeyaFsnctslksitlpsslteigsyaFsncssltsitipssltsigeyaFsncsslkeitlpsnlttigs 96  
                  t+Igs aF +c +ltsi++p  +ts+ge++F++c+ l+si+lpssl +ig +aF+ css+tsi++p slts+ge+aF +cssl++i+lp  lt++g+
  KOO22241.1 1992 TSIGSCAFISCsSLTSIELPAGLTSLGEFSFEGCSRLTSIELPSSLMSIGVNAFEWCSSMTSIELPASLTSLGERAFCGCSSLTSIQLPAGLTSLGE 2088
                  79*********************************************************************************************** PP

       LRR_5   97 saFsnc.slesitipssvtkigsnaFsncssl 127 
                  saF++c sl+si++p+ +t+i s aF +cssl
  KOO22241.1 2089 SAFECCsSLTSIELPAGLTSIVSCAFISCSSL 2120
                  *****************************876 PP

  == domain 3  score: 96.5 bits;  conditional E-value: 8.8e-31
       LRR_5    1 teIgsyaFync.nltsitipssvtsIgeyaFsnctslksitlpsslteigsyaFsncssltsitipssltsigeyaFsncsslkeitlp 88  
                  t+I s aF +c +ltsi++p  +tsIg+yaF++c+sl+si+lp +lt+ig++aF +css+tsi +p  ltsig+ aF++css+++i+lp
  KOO22241.1 2107 TSIVSCAFISCsSLTSIELPAGLTSIGDYAFYGCSSLTSIELPAGLTSIGDHAFHGCSSMTSIVLPAGLTSIGDDAFYGCSSMTSIELP 2195
                  57888899999999999999999999999999999999999999999999999999999999999999999999999999999999887 PP

>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.9   0.0   1.1e-20   1.5e-17      10     169 ..    1168    1317 ..    1164    1325 .. 0.89
   2 !   32.0   0.0   6.1e-11   7.8e-08     175     264 .]    1407    1486 ..    1394    1486 .. 0.83

  Alignments for each domain:
  == domain 1  score: 63.9 bits;  conditional E-value: 1.1e-20
                  ESSEEEEEEEETTTTEEEEEEEEECHCHCHHHHHHHHHHHHHHHHHSCTTB--EEEEEEESSEEE.EEEE--TTEBHHHHHHHHSS--HHHHHHHHH CS
     Pkinase   10 GsfGkVykaveketgkivAvKkikkekakkkkekkvlrEikilkklkhpnivrlyevfeekdely.lvleyveggeladllerkgslseeeakkiak 105 
                  G++++V+ + + +tg+ +AvK+ + +         ++rE+k+l+ +++++ivr++++f e+d    +vle  ++  la+ll  +g+l++ e k++++
  KOO22241.1 1168 GGSARVVLGEDVKTGQPIAVKVHSSRT-------YFAREMKLLRAMQSEYIVRFLDAFDEEDAPSaVVLEGGSCS-LAELLA-EGQLQPVERKHVLE 1255
                  88999****************876663.......4679*********************9887654888988866.*****6.79************ PP

                  HHHHHHHHHHHTTEE-SS-SGGGEEEE.TTTEEEE-SGTTSEESSSSCSBCTTTSCGGGS-HHHH CS
     Pkinase  106 qilegleylHskgiiHrDlKpeNiLid.ekgelKitDFGlakelessskltsfvgtseYlAPEvl 169 
                  +++ +++++Hs+g++  DlKp+Ni i  +   +K++D+   ++      + +f  t+ Y APE+ 
  KOO22241.1 1256 RLCLAVDFVHSRGFVLVDLKPANIVIFgSLLTFKLIDLECLRKNGD---TVHFKLTPFYAAPELA 1317
                  ***************************66667*****988776665...67************86 PP

  == domain 2  score: 32.0 bits;  conditional E-value: 6.1e-11
                  SHHHHHHHHHHHHHHHHHSS-STTTSSHHHHHHHHHHTHHHHHHHCT.SHH...HHHTTS-HHHHHHHHHHT-SSGCCSTTHHHHHTSGGG CS
     Pkinase  175 skkvDvWslGvilyelltgkppfsgekgkekvekeldqlekilkilg.etkeklpeaseiseeakdllkkllkkdpkkRltaeellqhpyl 264 
                  s ++D+W++G+i +el+t++p f+g +++      +       ++l   t ++lp a+  + +a++ll k+l k pk+R t+e++l+h yl
  KOO22241.1 1407 SVAMDIWAVGLIAFELFTNEPFFAGCSDDV-----AL------QVLAsSTPLELPMARIADTQAQHLLAKILVKRPKERATIEMILRHAYL 1486
                  7799********************444433.....22......23332667899999999****************************996 PP

>> Kelch_1  Kelch motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.4   0.0    0.0013       1.6       1      40 [.     570     609 ..     570     610 .. 0.96
   2 !   15.9   0.1   5.4e-06    0.0069       1      33 [.     620     652 ..     620     656 .. 0.89
   3 !   18.1   0.0   1.2e-06    0.0015       2      41 ..     669     708 ..     668     710 .. 0.95
   4 !    7.4   0.0    0.0025       3.2       2      33 ..     719     750 ..     718     760 .. 0.76
   5 !   10.7   0.0   0.00024       0.3       1      21 [.     768     788 ..     768     800 .. 0.91
   6 !   17.4   0.1   1.9e-06    0.0025       1      44 [.     818     861 ..     818     862 .. 0.94
   7 !   12.4   0.0   6.8e-05     0.087       3      25 ..     873     895 ..     871     900 .. 0.84
   8 !    7.2   0.1    0.0029       3.7       1      22 [.     941     962 ..     941     973 .. 0.86

  Alignments for each domain:
  == domain 1  score: 8.4 bits;  conditional E-value: 0.0013
                 BBBSEEEEEETTEEEEEEEBCSSSBEEEEEEEETTTTEEE CS
     Kelch_1   1 aragagavvvggkiYviGGsdggnalssvevyDpetntWr 40 
                 +ra+++ vv++++++ + G  gg++ls+v ++++ t +W+
  KOO22241.1 570 SRARPSLVVLDTYVFMLMGIAGGKPLSTVAMLNTHTYCWS 609
                 69*************************************7 PP

  == domain 2  score: 15.9 bits;  conditional E-value: 5.4e-06
                 BBBSEEEEEETTEEEEEEEBCSSSBEEEEEEEE CS
     Kelch_1   1 aragagavvvggkiYviGGsdggnalssvevyD 33 
                 ar ga+a+ vg+ +Y++GGsdg ++l+++ v+ 
  KOO22241.1 620 ARMGATATRVGTDLYIFGGSDGRTSLRDLHVLV 652
                 58899**********************998875 PP

  == domain 3  score: 18.1 bits;  conditional E-value: 1.2e-06
                 BBSEEEEEETTEEEEEEEBCSSSBEEEEEEEETTTTEEEE CS
     Kelch_1   2 ragagavvvggkiYviGGsdggnalssvevyDpetntWre 41 
                 r g+++  +g ++Yv+GG + g a ++++v+Dp  +tW++
  KOO22241.1 669 RVGHTSNFIGARLYVLGGASQGVAHNDLYVLDPNLQTWTR 708
                 899***********************************98 PP

  == domain 4  score: 7.4 bits;  conditional E-value: 0.0025
                 BBSEEEEEETTEEEEEEEBCSSSBEEEEEEEE CS
     Kelch_1   2 ragagavvvggkiYviGGsdggnalssvevyD 33 
                   g++avv+g ++ v GG+dg  a   + v+D
  KOO22241.1 719 LVGHSAVVLGSELIVWGGGDGKAAHAAFSVID 750
                 579******************55555555555 PP

  == domain 5  score: 10.7 bits;  conditional E-value: 0.00024
                 BBBSEEEEEETTEEEEEEEBC CS
     Kelch_1   1 aragagavvvggkiYviGGsd 21 
                 ar g++av ++ k++v+GG+ 
  KOO22241.1 768 ARVGHTAVLHDSKMFVFGGYG 788
                 699****************96 PP

  == domain 6  score: 17.4 bits;  conditional E-value: 1.9e-06
                 BBBSEEEEEETTEEEEEEEBCSSSBEEEEEEEETTTTEEEEECC CS
     Kelch_1   1 aragagavvvggkiYviGGsdggnalssvevyDpetntWrelps 44 
                 ++ +++a+ vg+ + v GGs++  al+ + ++D+++ +W+ + s
  KOO22241.1 818 PCVLHSATLVGHVMVVYGGSFNEVALNQLVAFDTVNMSWTNIGS 861
                 6889***********************************98765 PP

  == domain 7  score: 12.4 bits;  conditional E-value: 6.8e-05
                 BSEEEEEETTEEEEEEEBCSSSB CS
     Kelch_1   3 agagavvvggkiYviGGsdggna 25 
                  g+gav++++++ ++GG  gg +
  KOO22241.1 873 FGHGAVAIDHRLLIFGGTTGGVP 895
                 69****************99655 PP

  == domain 8  score: 7.2 bits;  conditional E-value: 0.0029
                 BBBSEEEEEETTEEEEEEEBCS CS
     Kelch_1   1 aragagavvvggkiYviGGsdg 22 
                 +++++++ +  gki+v+GG  g
  KOO22241.1 941 PAYRHTVSTRKGKIFVFGGVGG 962
                 5789***************987 PP

>> Kelch_5  Kelch motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.2   0.0     0.034        43       2      41 ..     568     605 ..     567     606 .. 0.83
   2 !   12.9   0.0   6.6e-05     0.085       2      29 ..     618     643 ..     617     654 .. 0.82
   3 !   10.5   0.1   0.00038      0.48       5      39 ..     669     701 ..     665     702 .. 0.88
   4 !   12.7   0.0   7.4e-05     0.094       2      25 ..     716     739 ..     715     752 .. 0.88
   5 !   19.1   0.0   7.7e-07   0.00098       2      25 ..     766     789 ..     766     801 .. 0.87
   6 ?    2.0   0.1      0.17   2.1e+02       2      24 ..     816     838 ..     815     849 .. 0.82
   7 !   11.8   0.1   0.00014      0.18       2      25 ..     869     892 ..     869     901 .. 0.87
   8 !   15.1   0.1   1.4e-05     0.017       2      29 ..     939     965 ..     939     972 .. 0.87

  Alignments for each domain:
  == domain 1  score: 4.2 bits;  conditional E-value: 0.034
     Kelch_5   2 PppRaghcavtvsekiYvyGGkvgrdgsvsddvyvLdlps 41 
                 P +Ra+ + v++++++++  G+ g  g++ + v  L++++
  KOO22241.1 568 PLSRARPSLVVLDTYVFMLMGIAG--GKPLSTVAMLNTHT 605
                 99****************878774..88888877777776 PP

  == domain 2  score: 12.9 bits;  conditional E-value: 6.6e-05
     Kelch_5   2 PppRaghcavtvsekiYvyGGkvgrdgs 29 
                 Pp+R+g+ a  v++ +Y++GG +g +  
  KOO22241.1 618 PPARMGATATRVGTDLYIFGGSDG-R-T 643
                 9**********************7.2.2 PP

  == domain 3  score: 10.5 bits;  conditional E-value: 0.00038
     Kelch_5   5 RaghcavtvsekiYvyGGkvgrdgsvsddvyvLdl 39 
                 R gh + + +  +Yv GG ++  g + +d+yvLd+
  KOO22241.1 669 RVGHTSNFIGARLYVLGGASQ--GVAHNDLYVLDP 701
                 899*****************4..8888******97 PP

  == domain 4  score: 12.7 bits;  conditional E-value: 7.4e-05
     Kelch_5   2 PppRaghcavtvsekiYvyGGkvg 25 
                 P ++ gh+av+++++++v+GG +g
  KOO22241.1 716 PDALVGHSAVVLGSELIVWGGGDG 739
                 999******************997 PP

  == domain 5  score: 19.1 bits;  conditional E-value: 7.7e-07
     Kelch_5   2 PppRaghcavtvsekiYvyGGkvg 25 
                 P++R gh av +++k++v+GG+++
  KOO22241.1 766 PSARVGHTAVLHDSKMFVFGGYGQ 789
                 99********************96 PP

  == domain 6  score: 2.0 bits;  conditional E-value: 0.17
     Kelch_5   2 PppRaghcavtvsekiYvyGGkv 24 
                 P+p   h+a  v++ + vyGG  
  KOO22241.1 816 PAPCVLHSATLVGHVMVVYGGSF 838
                 6677779999***********87 PP

  == domain 7  score: 11.8 bits;  conditional E-value: 0.00014
     Kelch_5   2 PppRaghcavtvsekiYvyGGkvg 25 
                 P p++gh av+ ++ ++++GG +g
  KOO22241.1 869 PLPLFGHGAVAIDHRLLIFGGTTG 892
                 99*******************875 PP

  == domain 8  score: 15.1 bits;  conditional E-value: 1.4e-05
     Kelch_5   2 PppRaghcavtvsekiYvyGGkvgrdgs 29 
                 Ppp ++h + t ++ki+v+GG++g dg+
  KOO22241.1 939 PPPAYRHTVSTRKGKIFVFGGVGG-DGH 965
                 9999*******************8.554 PP

>> Kelch_3  Galactose oxidase, central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.4   0.1   0.00011      0.14       6      47 ..     585     627 ..     581     629 .. 0.87
   2 !   10.4   0.2    0.0005      0.64       2      48 ..     632     676 ..     631     677 .. 0.80
   3 !   30.2   0.1   3.1e-10     4e-07       1      48 [.     678     726 ..     678     727 .. 0.94
   4 !   12.0   0.2   0.00016       0.2       3      48 ..     730     776 ..     728     777 .. 0.86
   5 !   15.6   0.0   1.1e-05     0.014       2      48 ..     779     826 ..     778     827 .. 0.91
   6 !   17.0   0.1   4.3e-06    0.0055       1      49 []     828     880 ..     828     880 .. 0.88
   7 ?    2.0   0.1      0.22   2.8e+02       2      38 ..     882     939 ..     881     949 .. 0.57
   8 ?   -2.5   0.6       5.3   6.8e+03       2      12 ..     952     962 ..     951     966 .. 0.79
   9 ?   -1.5   0.1       2.6   3.4e+03       4      15 ..    1484    1493 ..    1482    1499 .. 0.78

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 0.00011
     Kelch_3   6 ifGGlgddgqdrlndvyvydldtntWaei...aslppaRaghaat 47 
                    G    g+++l++v ++++ t  W +    +++ppaR+g++at
  KOO22241.1 585 MLMGIA--GGKPLSTVAMLNTHTYCWSMPildGTSPPARMGATAT 627
                 556777..89999**************77799***********99 PP

  == domain 2  score: 10.4 bits;  conditional E-value: 0.0005
     Kelch_3   2 drlyifGGlgddgqdrlndvyvydldtntWaei...aslppaRaghaata 48 
                 d lyifGG +  g+++l d++v+  +  tW +    + +p  R+gh++ +
  KOO22241.1 632 D-LYIFGGSD--GRTSLRDLHVLVYV--TWFTPsyaGKPPDCRVGHTSNF 676
                 5.9*******..**********9988..6776667666666888888765 PP

  == domain 3  score: 30.2 bits;  conditional E-value: 3.1e-10
     Kelch_3   1 gdrlyifGGlgddgqdrlndvyvydldtntWaei...aslppaRaghaata 48 
                 g rly+ GG+    + ++nd+yv+d++  tW++    +++p a +gh+a++
  KOO22241.1 678 GARLYVLGGAS--QGVAHNDLYVLDPNLQTWTRPpmyGTPPDALVGHSAVV 726
                 679********..*******************88888***********986 PP

  == domain 4  score: 12.0 bits;  conditional E-value: 0.00016
     Kelch_3   3 rlyifGGlgddgqdrlndvyvydldtntWaei...aslppaRaghaata 48 
                 +l + GG +  g  ++ ++ v+d+ +  W +    +s p+aR+gh+a++
  KOO22241.1 730 ELIVWGGGD--GKAAHAAFSVIDTLNMLWSRPttsGSQPSARVGHTAVL 776
                 577778888..99999********99****66668***********985 PP

  == domain 5  score: 15.6 bits;  conditional E-value: 1.1e-05
     Kelch_3   2 drlyifGGlgddgqdrlndvyvydldtntWaei...aslppaRaghaata 48 
                  ++++fGG+g   +++ n++ ++d++   W +    +++p +++ h+at+
  KOO22241.1 779 SKMFVFGGYG--QRQYWNELVALDTGILVWIRPhtvGQPPAPCVLHSATL 826
                 58********..99999***********99966666************96 PP

  == domain 6  score: 17.0 bits;  conditional E-value: 4.3e-06
     Kelch_3   1 gdrlyifGGlgddgqdrlndvyvydldtntWaei......aslppaRaghaatai 49 
                 g+ ++++GG    ++ +ln++ ++d+++ +W++i      ++ p +  gh a+ai
  KOO22241.1 828 GHVMVVYGGSF--NEVALNQLVAFDTVNMSWTNIgsflweGPRPLPLFGHGAVAI 880
                 678********..*********************666666667889999998876 PP

  == domain 7  score: 2.0 bits;  conditional E-value: 0.22
     Kelch_3   2 drlyifGGlgd...........dgqdrl.......ndvyvydldtntWaei...aslp 38 
                 +rl+ifGG ++           +++ ++       nd+ v dl++ t+ +    ++ p
  KOO22241.1 882 HRLLIFGGTTGgvpdslasylfGRGFVTgyaagarNDLVVMDLQARTFSMPkyaGRRP 939
                 799*****99554444444443333333666666666666666666666555564444 PP

  == domain 8  score: -2.5 bits;  conditional E-value: 5.3
     Kelch_3   2 drlyifGGlgd 12 
                 +++++fGG g+
  KOO22241.1 952 GKIFVFGGVGG 962
                 689*****775 PP

  == domain 9  score: -1.5 bits;  conditional E-value: 2.6
     Kelch_3    4 lyifGGlgddgq 15  
                  +y++GGl++  q
  KOO22241.1 1484 AYLVGGLDT--Q 1493
                  8******94..3 PP

>> Kelch_2  Kelch motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.0       4.5   5.8e+03       2      42 ..     571     608 ..     570     609 .. 0.77
   2 !   12.7   0.0   7.5e-05     0.096       1      35 [.     620     651 ..     620     656 .. 0.93
   3 !   17.3   0.0   2.7e-06    0.0035       1      45 [.     668     709 ..     668     711 .. 0.95
   4 !    9.2   0.0   0.00097       1.2       2      20 ..     719     737 ..     718     762 .. 0.79
   5 !   15.3   0.0   1.1e-05     0.014       1      38 [.     768     802 ..     768     809 .. 0.75
   6 !    7.9   0.1    0.0024       3.1       1      44 [.     818     858 ..     818     861 .. 0.85
   7 !    6.5   0.1    0.0069       8.9       1      20 [.     871     890 ..     871     929 .. 0.84
   8 !   11.0   0.1   0.00026      0.33       3      25 ..     943     967 ..     941     975 .. 0.78

  Alignments for each domain:
  == domain 1  score: -2.5 bits;  conditional E-value: 4.5
     Kelch_2   2 rgghsssvpggkiyvvGGahtdnpnlsssdvhvldlekhvW 42 
                 r++ s +v++  +++  G+ +++++ls+  +  l++ +++W
  KOO22241.1 571 RARPSLVVLDTYVFMLMGI-AGGKPLSTVAM--LNTHTYCW 608
                 8899999999999999888.77777777666..66666666 PP

  == domain 2  score: 12.7 bits;  conditional E-value: 7.5e-05
     Kelch_2   1 rrgghsssvpggkiyvvGGahtdnpnlsssdvhvl 35 
                 +r+g +++ +g  +y++GG+   ++  s +d+hvl
  KOO22241.1 620 ARMGATATRVGTDLYIFGGS---DGRTSLRDLHVL 651
                 699*****************...*********997 PP

  == domain 3  score: 17.3 bits;  conditional E-value: 2.7e-06
     Kelch_2   1 rrgghsssvpggkiyvvGGahtdnpnlsssdvhvldlekhvWeev 45 
                 +r+gh+s  +g ++yv GGa     + +++d++vld++ ++W++ 
  KOO22241.1 668 CRVGHTSNFIGARLYVLGGA---SQGVAHNDLYVLDPNLQTWTRP 709
                 599*****************...*******************985 PP

  == domain 4  score: 9.2 bits;  conditional E-value: 0.00097
     Kelch_2   2 rgghsssvpggkiyvvGGa 20 
                 ++ghs++v+g+ ++v+GG 
  KOO22241.1 719 LVGHSAVVLGSELIVWGGG 737
                 79****************5 PP

  == domain 5  score: 15.3 bits;  conditional E-value: 1.1e-05
     Kelch_2   1 rrgghsssvpggkiyvvGGahtdnpnlsssdvhvldle 38 
                 +r+gh+++  ++k++v+GG+   +   + + +  ld++
  KOO22241.1 768 ARVGHTAVLHDSKMFVFGGY---GQRQYWNELVALDTG 802
                 69******************...555555555555555 PP

  == domain 6  score: 7.9 bits;  conditional E-value: 0.0024
     Kelch_2   1 rrgghsssvpggkiyvvGGahtdnpnlsssdvhvldlekhvWee 44 
                 +++ hs++ +g+ ++v+GG+    +  + + +  +d+   +W++
  KOO22241.1 818 PCVLHSATLVGHVMVVYGGS---FNEVALNQLVAFDTVNMSWTN 858
                 5778****************...888888888888888888876 PP

  == domain 7  score: 6.5 bits;  conditional E-value: 0.0069
     Kelch_2   1 rrgghsssvpggkiyvvGGa 20 
                 +++gh ++ ++++++++GG 
  KOO22241.1 871 PLFGHGAVAIDHRLLIFGGT 890
                 6899***************7 PP

  == domain 8  score: 11.0 bits;  conditional E-value: 0.00026
     Kelch_2   3 gghsssvpggkiyvvGGa..htdnp 25 
                 ++h++s+  gki+v+GG+  +++++
  KOO22241.1 943 YRHTVSTRKGKIFVFGGVggDGHMS 967
                 89****************5444443 PP

>> Kelch_6  Kelch motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.1   0.0      0.91   1.2e+03       2      41 ..     571     609 ..     570     610 .. 0.84
   2 !    7.5   0.0    0.0042       5.3       7      32 ..     625     650 ..     619     651 .. 0.79
   3 !   18.8   0.0   1.1e-06    0.0015       1      42 [.     668     708 ..     668     719 .. 0.91
   4 !    8.3   0.0    0.0024         3       4      41 ..     721     757 ..     716     761 .. 0.91
   5 !   12.9   0.0   8.3e-05      0.11       1      30 [.     768     792 ..     768     806 .. 0.88
   6 !   11.5   0.0   0.00023      0.29       4      46 ..     821     862 ..     817     868 .. 0.84
   7 !    7.6   0.1    0.0038       4.9       4      23 ..     874     893 ..     871     903 .. 0.84
   8 ?    3.9   0.1     0.056        72       4      26 ..     944     967 ..     941     971 .. 0.78

  Alignments for each domain:
  == domain 1  score: 0.1 bits;  conditional E-value: 0.91
     Kelch_6   2 raghslvsvggkiYifGGytdsspylnkvwvydpetksWe 41 
                 ra +slv+ + +++++ G  + +++l+ v  ++  t  W+
  KOO22241.1 571 RARPSLVVLDTYVFMLMGIAG-GKPLSTVAMLNTHTYCWS 609
                 7889*********99877776.799999999999988885 PP

  == domain 2  score: 7.5 bits;  conditional E-value: 0.0042
     Kelch_6   7 lvs.vggkiYifGGytdsspylnkvwv 32 
                 +++ vg  +YifGG+++  ++l++++v
  KOO22241.1 625 TATrVGTDLYIFGGSDG-RTSLRDLHV 650
                 44448999********9.899999987 PP

  == domain 3  score: 18.8 bits;  conditional E-value: 1.1e-06
     Kelch_6   1 praghslvsvggkiYifGGytdsspylnkvwvydpetksWeq 42 
                 +r+gh++  +g ++Y++GG+++ + ++n+++v+dp   +W++
  KOO22241.1 668 CRVGHTSNFIGARLYVLGGASQ-GVAHNDLYVLDPNLQTWTR 708
                 688999999999**********.9****************86 PP

  == domain 4  score: 8.3 bits;  conditional E-value: 0.0024
     Kelch_6   4 ghslvsvggkiYifGGytdsspylnkvwvydpetksWe 41 
                 ghs+v+ g+ + ++GG ++   ++  + v+d  ++ W+
  KOO22241.1 721 GHSAVVLGSELIVWGGGDG-KAAHAAFSVIDTLNMLWS 757
                 8*****************9.899999999999999887 PP

  == domain 5  score: 12.9 bits;  conditional E-value: 8.3e-05
     Kelch_6   1 praghslvsvggkiYifGGytdsspylnkv 30 
                 +r+gh++v++++k ++fGGy++     +++
  KOO22241.1 768 ARVGHTAVLHDSKMFVFGGYGQ-----RQY 792
                 589******************9.....444 PP

  == domain 6  score: 11.5 bits;  conditional E-value: 0.00023
     Kelch_6   4 ghslvsvggkiYifGGytdsspylnkvwvydpetksWeqlppl 46 
                  hs+++vg   +++GG+ + + +ln++  +d  ++sW+ ++++
  KOO22241.1 821 LHSATLVGHVMVVYGGSFN-EVALNQLVAFDTVNMSWTNIGSF 862
                 68888888877899*****.9******************9975 PP

  == domain 7  score: 7.6 bits;  conditional E-value: 0.0038
     Kelch_6   4 ghslvsvggkiYifGGytds 23 
                 gh +v+++ ++ ifGG t++
  KOO22241.1 874 GHGAVAIDHRLLIFGGTTGG 893
                 799**************986 PP

  == domain 8  score: 3.9 bits;  conditional E-value: 0.056
     Kelch_6   4 ghslvsvggkiYifGGytds.spy 26 
                  h++ +  gki++fGG +++ +++
  KOO22241.1 944 RHTVSTRKGKIFVFGGVGGDgHMS 967
                 68888899********98876555 PP

>> Methyltr_RsmB-F  16S rRNA methyltransferase RsmB/F
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.4   0.0   3.4e-20   4.3e-17      69     197 ..     116     305 ..     112     308 .. 0.75

  Alignments for each domain:
  == domain 1  score: 62.4 bits;  conditional E-value: 3.4e-20
                      TCCHHHHCC.........EEEEEEEE--CCGGGTTT-TCHHHH--HHHHHHHHHHHHHHHHHHCCCEEEEEEEEEEES--STTTTHHHHHHHHH CS
  Methyltr_RsmB-F  69 rkidkvlgg.......elfDriLlDaPCsgtgvirrdpdvklrrkekdiaqlaklqkellsaaidllkkgGvlvYsTCsvlveEneevieeaLk 155
                      r+i+k+lgg       + +Dri  D+PC+g g+ir+ p++    +++   ql++lq +l   a++ll +gGv+ YsTCs+++ Ene+v+ ++L+
       KOO22241.1 116 REIHKWLGGcgdgaarRGYDRIVCDVPCTGDGAIRKAPELWRYWSPHLGRQLHSLQLQLALRAAHLLAPGGVMAYSTCSLNPLENEAVVVALLQ 209
                      677788887778887788**********************7778899999*******************************************9 PP

                      H-T.TEEEESSBSTTS.TTSSECEEC....................................................TSEEE-TTTTSS-SEE CS
  Methyltr_RsmB-F 156 kre.dvelvetelsep.kglklgeea....................................................gtlrllPhtenkdgff 195
                      +   + el +t    p  + + g ++                                                      +rl+Ph ++  gff
       KOO22241.1 210 RSSgELELLPTAHLLPeLQRRPGLTTwavfddrmrrlhsfgqsqrkrvskglrrcfratmwppagsaegadailsvlpRCMRLVPHLHDSGGFF 303
                      8742566666643322023333444366666666666666666666666666666666666666666666666666666666666666666666 PP

                      EE CS
  Methyltr_RsmB-F 196 ia 197
                      +a
       KOO22241.1 304 VA 305
                      66 PP

>> Kelch_4  Galactose oxidase, central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.3   1.1e-05     0.014       1      34 [.     620     651 ..     620     652 .. 0.94
   2 !   22.1   0.0   8.9e-08   0.00011       2      43 ..     669     708 ..     669     717 .. 0.90
   3 ?    0.9   0.2      0.37   4.8e+02       3      21 ..     720     737 ..     720     753 .. 0.84
   4 !    9.3   0.1   0.00089       1.1       1      23 [.     768     789 ..     768     805 .. 0.80
   5 !    9.7   0.1   0.00066      0.85       4      45 ..     821     860 ..     820     869 .. 0.91
   6 !    7.8   1.0    0.0025       3.2       4      30 ..     874     897 ..     873     910 .. 0.81
   7 !    7.6   0.1     0.003       3.8       8      26 ..     947     967 ..     945     973 .. 0.83

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 1.1e-05
     Kelch_4   1 pRaghsatsipdgtiylfGGrgedgtllndlyll 34 
                 +R+g++at ++  ++y+fGG  +  t+l dl++l
  KOO22241.1 620 ARMGATATRVG-TDLYIFGGSDGR-TSLRDLHVL 651
                 7*********6.9**********8.9******96 PP

  == domain 2  score: 22.1 bits;  conditional E-value: 8.9e-08
     Kelch_4   2 RaghsatsipdgtiylfGGrgedgtllndlylldlstntWrr 43 
                 R+gh++  i+  ++y+ GG++  g ++ndly+ld    tW+r
  KOO22241.1 669 RVGHTSNFIG-ARLYVLGGASQ-GVAHNDLYVLDPNLQTWTR 708
                 99*******6.9**********.6****************98 PP

  == domain 3  score: 0.9 bits;  conditional E-value: 0.37
     Kelch_4   3 aghsatsipdgtiylfGGr 21 
                 +ghsa++++  +++++GG 
  KOO22241.1 720 VGHSAVVLG-SELIVWGGG 737
                 58******7.79999**95 PP

  == domain 4  score: 9.3 bits;  conditional E-value: 0.00089
     Kelch_4   1 pRaghsatsipdgtiylfGGrge 23 
                 +R+gh+a+  +  + ++fGG+g 
  KOO22241.1 768 ARVGHTAVLHD-SKMFVFGGYGQ 789
                 7*********5.78888***986 PP

  == domain 5  score: 9.7 bits;  conditional E-value: 0.00066
     Kelch_4   4 ghsatsipdgtiylfGGrgedgtllndlylldlstntWrrlg 45 
                  hsat ++    +++GG  ++  +ln l ++d+ + +W+ +g
  KOO22241.1 821 LHSATLVG-HVMVVYGGSFNE-VALNQLVAFDTVNMSWTNIG 860
                 69*****6.9**********9.****************9875 PP

  == domain 6  score: 7.8 bits;  conditional E-value: 0.0025
     Kelch_4   4 ghsatsipdgtiylfGGrgedgtllnd 30 
                 gh+a++i d ++ +fGG ++ g + + 
  KOO22241.1 874 GHGAVAI-DHRLLIFGGTTG-G-VPDS 897
                 8******.7********998.4.5555 PP

  == domain 7  score: 7.6 bits;  conditional E-value: 0.003
     Kelch_4   8 tsipdgtiylfGGrgedg..t 26 
                 +s+++g+i++fGG g+dg  +
  KOO22241.1 947 VSTRKGKIFVFGGVGGDGhmS 967
                 8999***********999554 PP

>> LRR_8  Leucine rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.1   0.0    0.0017       2.2      13      56 ..    1899    1941 ..    1897    1945 .. 0.86
   2 ?    1.0   0.0      0.28   3.6e+02      35      56 ..    1944    1964 ..    1921    1966 .. 0.70
   3 ?    5.0   0.0     0.016        20      13      56 ..    1945    1987 ..    1942    1990 .. 0.85
   4 ?    5.2   0.0     0.014        18      13      56 ..    1968    2010 ..    1957    2012 .. 0.85
   5 ?    5.7   0.0      0.01        13      13      56 ..    2014    2056 ..    2003    2058 .. 0.81
   6 !    7.6   0.0    0.0025       3.2      12      56 ..    2036    2079 ..    2026    2082 .. 0.85
   7 !    9.2   0.0   0.00078      0.99      12      56 ..    2059    2102 ..    2050    2105 .. 0.93
   8 ?    3.4   0.0     0.053        67      13      56 ..    2083    2125 ..    2081    2128 .. 0.77
   9 !   13.6   0.0   3.4e-05     0.043      13      56 ..    2129    2171 ..    2118    2173 .. 0.91
  10 ?    3.5   0.0     0.046        60      13      32 ..    2175    2194 ..    2173    2196 .. 0.89

  Alignments for each domain:
  == domain 1  score: 8.1 bits;  conditional E-value: 0.0017
                  -SEE-TTSSTT-TT--EEE--SS---GGGGGGGTT--S-.EEE- CS
       LRR_8   13 ltslddeaFkglsnLkvLdLsnNllttlspgafsgLpsLrsLdL 56  
                  lts++ +aF+++s+L+++ L   l++ +  +af+g+ s +s+ L
  KOO22241.1 1899 LTSIGESAFEDCSSLTSITLPASLMS-IGVNAFWGCCSMTSIEL 1941
                  89*******************99555.5568***9999998887 PP

  == domain 2  score: 1.0 bits;  conditional E-value: 0.28
                  S---GGGGGGGTT--S-.EEE- CS
       LRR_8   35 NllttlspgafsgLpsLrsLdL 56  
                    lt+l + af g++sL+s+ L
  KOO22241.1 1944 S-LTSLGKCAFCGCSSLTSIQL 1964
                  3.77777778888888887776 PP

  == domain 3  score: 5.0 bits;  conditional E-value: 0.016
                  -SEE-TTSSTT-TT--EEE--SS---GGGGGGGTT--S-.EEE- CS
       LRR_8   13 ltslddeaFkglsnLkvLdLsnNllttlspgafsgLpsLrsLdL 56  
                  ltsl++ aF g+s+L++++L    lt+l + af+ ++sL+s+ L
  KOO22241.1 1945 LTSLGKCAFCGCSSLTSIQLPAG-LTSLGESAFEFCSSLTSIEL 1987
                  78888999999999999999888.99999999999999998877 PP

  == domain 4  score: 5.2 bits;  conditional E-value: 0.014
                  -SEE-TTSSTT-TT--EEE--SS---GGGGGGGTT--S-.EEE- CS
       LRR_8   13 ltslddeaFkglsnLkvLdLsnNllttlspgafsgLpsLrsLdL 56  
                  ltsl+ +aF+ +s+L++++L    lt++   af +++sL+s+ L
  KOO22241.1 1968 LTSLGESAFEFCSSLTSIELPAG-LTSIGSCAFISCSSLTSIEL 2010
                  89******************998.99999999999999999887 PP

  == domain 5  score: 5.7 bits;  conditional E-value: 0.01
                  -SEE-TTSSTT-TT--EEE--SS---GGGGGGGTT--S-.EEE- CS
       LRR_8   13 ltslddeaFkglsnLkvLdLsnNllttlspgafsgLpsLrsLdL 56  
                  ltsl+  +F+g+s+L++++L + l++    +af+ ++s +s+ L
  KOO22241.1 2014 LTSLGEFSFEGCSRLTSIELPSSLMSI-GVNAFEWCSSMTSIEL 2056
                  89******************9995554.4578888888887776 PP

  == domain 6  score: 7.6 bits;  conditional E-value: 0.0025
                  --SEE-TTSSTT-TT--EEE--SS---GGGGGGGTT--S-.EEE- CS
       LRR_8   12 rltslddeaFkglsnLkvLdLsnNllttlspgafsgLpsLrsLdL 56  
                  +l s++  aF+ +s++++++L    lt+l ++af g++sL+s+ L
  KOO22241.1 2036 SLMSIGVNAFEWCSSMTSIELPAS-LTSLGERAFCGCSSLTSIQL 2079
                  467899999999999999999998.*****************998 PP

  == domain 7  score: 9.2 bits;  conditional E-value: 0.00078
                  --SEE-TTSSTT-TT--EEE--SS---GGGGGGGTT--S-.EEE- CS
       LRR_8   12 rltslddeaFkglsnLkvLdLsnNllttlspgafsgLpsLrsLdL 56  
                  +ltsl+  aF g+s+L++++L    lt+l + af++++sL+s+ L
  KOO22241.1 2059 SLTSLGERAFCGCSSLTSIQLPAG-LTSLGESAFECCSSLTSIEL 2102
                  5899*****************999.****************9988 PP

  == domain 8  score: 3.4 bits;  conditional E-value: 0.053
                  -SEE-TTSSTT-TT--EEE--SS---GGGGGGGTT--S-.EEE- CS
       LRR_8   13 ltslddeaFkglsnLkvLdLsnNllttlspgafsgLpsLrsLdL 56  
                  ltsl+ +aF+ +s+L++++L    lt++   af +++sL+s+ L
  KOO22241.1 2083 LTSLGESAFECCSSLTSIELPAG-LTSIVSCAFISCSSLTSIEL 2125
                  78889999999999999998887.55555588888888888776 PP

  == domain 9  score: 13.6 bits;  conditional E-value: 3.4e-05
                  -SEE-TTSSTT-TT--EEE--SS---GGGGGGGTT--S-.EEE- CS
       LRR_8   13 ltslddeaFkglsnLkvLdLsnNllttlspgafsgLpsLrsLdL 56  
                  lts++d aF+g+s+L++++L    lt++  +af+g++s +s+ L
  KOO22241.1 2129 LTSIGDYAFYGCSSLTSIELPAG-LTSIGDHAFHGCSSMTSIVL 2171
                  89********************9.***************99987 PP

  == domain 10  score: 3.5 bits;  conditional E-value: 0.046
                  -SEE-TTSSTT-TT--EEE- CS
       LRR_8   13 ltslddeaFkglsnLkvLdL 32  
                  lts++d+aF+g+s++++++L
  KOO22241.1 2175 LTSIGDDAFYGCSSMTSIEL 2194
                  89999999999999999887 PP

>> SAM_1  SAM domain (Sterile alpha motif)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.9   0.1   3.8e-14   4.9e-11       4      62 ..    1019    1077 ..    1016    1079 .. 0.93

  Alignments for each domain:
  == domain 1  score: 42.9 bits;  conditional E-value: 3.8e-14
                  THSSHHHHHHHTTSGGGHHHHHTTTSSHHHHTTSCHHHHHHCTTTSHHHHHHHHHHHHH CS
       SAM_1    4 svedVgeWLesiglgqYadlFrageidgdaLlllteddLeklgvtllGHrkkIlyaIqr 62  
                  + ++++  L+++++ +Y+ lF ++e+d+d Ll+l++ dL+++gvt lG r+k+  aI++
  KOO22241.1 1019 RASQLVSLLQELDMNKYTRLFLRQEVDVDSLLTLSDADLKDMGVTALGARRKLTVAIHK 1077
                  56789999*********************************************999987 PP

>> SAM_2  SAM domain (Sterile alpha motif)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.4   0.1   2.9e-11   3.7e-08       6      62 ..    1020    1075 ..    1016    1079 .. 0.91

  Alignments for each domain:
  == domain 1  score: 33.4 bits;  conditional E-value: 2.9e-11
                  HHHHHHHHHHTTTGGGHHHHHHTTCSHHHHHTTSCHHHHHHTTHHHHHHHHHHHHHH CS
       SAM_2    6 ledvaeWLrsiglkqytdnFrdagitgaelllrlteedLkrlGitsvghrkkilkki 62  
                  ++++ + L+++++ +yt  F++++++  + ll l+  dLk++G+t++g r+k+  +i
  KOO22241.1 1020 ASQLVSLLQELDMNKYTRLFLRQEVDV-DSLLTLSDADLKDMGVTALGARRKLTVAI 1075
                  5688899********************.9***********************98776 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.9   0.0         5   6.4e+03     218     254 ..     407     443 ..     400     445 .. 0.86
   2 !   15.4   0.0   6.6e-06    0.0085      26     138 ..    1180    1283 ..    1151    1322 .. 0.78
   3 !   11.2   0.0   0.00013      0.16     183     257 ..    1407    1482 ..    1399    1484 .. 0.83

  Alignments for each domain:
  == domain 1  score: -3.9 bits;  conditional E-value: 5
                  HHTTEES-BBTTSBHHHHHHHHHHT-SSGGGS--HHH CS
  Pkinase_Tyr 218 lkegkrlekpekcpeelyelmkkcweedpeeRptfse 254
                   + ++r+++  ++p+++  l ++  +  ++ Rp f+ 
   KOO22241.1 407 HEGEERMAAEPHAPRTIVVLSETTAAVLADARPAFRP 443
                  467899**************9999999******9985 PP

  == domain 2  score: 15.4 bits;  conditional E-value: 6.6e-06
                   SSEEEEEEEEESTTSSHHHHHHHHHHHHHHHTS-BTTB--EEEEEE.SSSSEEEEEE--TTEBHHHHHHHTCTTTSBHHHHHHHHHHHHHHHHHHH CS
  Pkinase_Tyr   26 kkevkVavKtlkeeateeekeelleeakimkklkhpnivkllgvct.keepllivteyvkgGdLlkfLrkkekekltlkdllsfalqvAkGmeyLe 120 
                   k+ + +avK+       ++++ + +e+k++++++ + iv++l +   ++ p  +v+e   + +L + L +    +l+  +  ++   ++ ++++++
   KOO22241.1 1180 KTGQPIAVKVH------SSRTYFAREMKLLRAMQSEYIVRFLDAFDeEDAPSAVVLEG-GSCSLAELLAEG---QLQPVERKHVLERLCLAVDFVH 1265
                   55666677765......45789***********************9666778888875.5669*****998...7888888888899********* PP

                   HTTEEEST-SGGGEEEEE CS
  Pkinase_Tyr  121 skklvHrdlaarNvLlse 138 
                   s+ +v  dl   N+++  
   KOO22241.1 1266 SRGFVLVDLKPANIVIFG 1283
                   *************99864 PP

  == domain 3  score: 11.2 bits;  conditional E-value: 0.00013
                   EHHHHHHHHHHHHHHHHTTSSGTTTTSHHHHHHHHHHTTEES-BBTT..SBHHHHHHHHHHT-SSGGGS--HHHHHH CS
  Pkinase_Tyr  183 tsksDvWsfGvllwEiftlgespypglkneevleklkegkrlekpek..cpeelyelmkkcweedpeeRptfselve 257 
                   +++ D+W+ G + +E+ft  e  ++g+++  +l+ l +++ le p    + ++ ++l+ k + ++p+eR+t++ +++
   KOO22241.1 1407 SVAMDIWAVGLIAFELFT-NEPFFAGCSDDVALQVLASSTPLELPMAriADTQAQHLLAKILVKRPKERATIEMILR 1482
                   6788**************.5566788899999999999888776654227888999***************998875 PP

>> LRR_4  Leucine Rich repeats (2 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.0       7.4   9.5e+03      13      30 ..    1899    1918 ..    1898    1921 .. 0.80
   2 ?   -1.1   0.0       2.3     3e+03      12      25 ..    1958    1971 ..    1953    1973 .. 0.85
   3 ?    7.8   0.0    0.0036       4.6       6      43 ..    2000    2034 ..    1998    2035 .. 0.89
   4 ?   -0.3   0.1       1.3   1.7e+03      13      25 ..    2074    2086 ..    2068    2109 .. 0.66
   5 ?    0.7   0.0      0.59   7.6e+02      25      30 ..    2120    2125 ..    2093    2158 .. 0.57

  Alignments for each domain:
  == domain 1  score: -2.7 bits;  conditional E-value: 7.4
                  --E-S-..HHH-TT--EEE- CS
       LRR_4   13 ltdipl..leklpnLkeLdL 30  
                  lt+i+   +e + +L++++L
  KOO22241.1 1899 LTSIGEsaFEDCSSLTSITL 1918
                  77888867778999999987 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 2.3
                  ---E-S-HHH-TT- CS
       LRR_4   12 qltdiplleklpnL 25  
                   lt+i+l+++l++L
  KOO22241.1 1958 SLTSIQLPAGLTSL 1971
                  49*******9*998 PP

  == domain 3  score: 7.8 bits;  conditional E-value: 0.0036
                  EE--SS---E-S-HHH-TT--EEE-.-S-----GGGGX CS
       LRR_4    6 LdLsnNqltdiplleklpnLkeLdLsgNnlitdldeLk 43  
                  +++s+  lt+i+l+++l++L e++  g++++t++ eL+
  KOO22241.1 2000 ISCSS--LTSIELPAGLTSLGEFSFEGCSRLTSI-ELP 2034
                  56777..**************************9.576 PP

  == domain 4  score: -0.3 bits;  conditional E-value: 1.3
                  --E-S-HHH-TT- CS
       LRR_4   13 ltdiplleklpnL 25  
                  lt+i+l+++l++L
  KOO22241.1 2074 LTSIQLPAGLTSL 2086
                  6777777766666 PP

  == domain 5  score: 0.7 bits;  conditional E-value: 0.59
                  --EEE- CS
       LRR_4   25 LkeLdL 30  
                  L+++ L
  KOO22241.1 2120 LTSIEL 2125
                  333322 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (2204 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       457  (0.0254894); expected 358.6 (0.02)
Passed bias filter:                      312  (0.017402); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                        15  (0.000836633); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              14  [number of targets reported over threshold]
# CPU time: 1.09u 0.33s 00:00:01.42 Elapsed: 00:00:00.52
# Mc/sec: 12774.09
//
Query:       KOO22242.1  [L=105]
Description: hypothetical protein Ctob_006375 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.094   12.2   0.0       0.11   12.0   0.0    1.1  1  Stevor    Subtelomeric Variable Open Reading frame


Domain annotation for each model (and alignments):
>> Stevor  Subtelomeric Variable Open Reading frame
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   6.4e-06      0.11     233     260 ..      17      44 ..       2      47 .. 0.81

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 6.4e-06
      Stevor 233 fepygiaalvllilavvliiLYiwlyrR 260
                 +   g+ ++  ++ +v+l++L+ wlyrR
  KOO22242.1  17 LLVIGLCIIGGVVATVLLVVLFDWLYRR 44 
                 55667777778999*************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (105 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       452  (0.0252106); expected 358.6 (0.02)
Passed bias filter:                      368  (0.0205254); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.22s 00:00:00.59 Elapsed: 00:00:00.38
# Mc/sec: 837.22
//
Query:       KOO22243.1  [L=251]
Description: symbiosis-related like protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.7e-74  245.5   0.0    2.7e-37  127.1   0.0    2.3  2  Atg8        Autophagy protein Atg8 ubiquitin like
    2.2e-09   37.6   0.0     0.0023   18.3   0.0    2.4  2  APG12       Ubiquitin-like autophagy protein Apg12
  ------ inclusion threshold ------
      0.015   15.6   0.0        4.7    7.5   0.0    2.2  2  Il2rg       Putative Interleukin 2 receptor, gamma chain
       0.02   14.6   0.0        5.5    6.7   0.0    2.1  2  PRiA4_ORF3  Plasmid pRiA4b ORF-3-like protein


Domain annotation for each model (and alignments):
>> Atg8  Autophagy protein Atg8 ubiquitin like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  127.1   0.0   5.9e-41   2.7e-37       2     104 .]      11     123 ..      10     123 .. 0.90
   2 !  116.0   0.0   1.7e-37   7.8e-34       5     101 ..     149     247 ..     146     248 .. 0.96

  Alignments for each domain:
  == domain 1  score: 127.1 bits;  conditional E-value: 5.9e-41
                 HHHHHHHHHHHSTTEEEEEEEE-TTSS.S---S-SEEEEETTSBHHHHHHHHHHHTT--TTS-EEEEETT.E........-SSTTSBHHHHHHHH--TT CS
        Atg8   2 rkkesekirekypdriPvivekaekek.lpeldkkkylvPedltvgqlvliirkrlqlepekalfllvne.t........lpstsatmsalyeeekded 90 
                 rk+ ++ ir+k+pdriPviv k e++  lp++dk+k+lvP+dlt+gq++++irkr++l+pe+a+fl+v   t        lps+ at++a+y+++  ed
  KOO22243.1  11 RKASAAAIRAKHPDRIPVIVHKREGDAsLPDIDKRKFLVPSDLTIGQFMYVIRKRIKLAPEQAIFLFVASgTpsgkpsgiLPSSVATLKAVYDQHCAED 109
                 889999*****************99877****************************************74222333334389999************** PP

                 SSEEEEEESSSTB- CS
        Atg8  91 gflyvvyssentfG 104
                 gfly++ys+en+fG
  KOO22243.1 110 GFLYMTYSGENVFG 123
                 *************9 PP

  == domain 2  score: 116.0 bits;  conditional E-value: 1.7e-37
                 HHHHHHHHSTTEEEEEEEE-TTSS.S---S-SEEEEETTSBHHHHHHHHHHHTT--TTS-EEEEETT.E-SSTTSBHHHHHHHH--TTSSEEEEEESSS CS
        Atg8   5 esekirekypdriPvivekaekek.lpeldkkkylvPedltvgqlvliirkrlqlepekalfllvne.tlpstsatmsalyeeekdedgflyvvyssen 101
                  s+ ir+k+pdriPviv k e++  lp++dk+k+lvP+dlt+gq+ ++irkr++l  e+ +fl+v   tlp++ at++a+ +++  +dgfly++ys+en
  KOO22243.1 149 SSAAIRAKHPDRIPVIVRKCEGDAsLPDMDKRKFLVPSDLTIGQFTYVIRKRIKLGDEQDIFLFVASgTLPPSVATLKAVDDQHCADDGFLYMTYSGEN 247
                 6789*****************9888****************************************998*****************************97 PP

>> APG12  Ubiquitin-like autophagy protein Apg12
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   0.0   1.5e-06    0.0068      10      87 .]      37     123 ..      28     123 .. 0.76
   2 !   18.3   0.0   5.1e-07    0.0023      10      81 ..     172     244 ..     163     247 .. 0.89

  Alignments for each domain:
  == domain 1  score: 16.8 bits;  conditional E-value: 1.5e-06
                 TTS---S--EEEEETTSBHHHHHHHHHHHCT-.SSSS-EEEETT........TB---TTSBHHHHHHHH-BTTEEE.EEEESSS--- CS
       APG12  10 gdvpilkkkklkvnasdtvakvilflkkeLklqaseslflYvnn........sFaPsPdeeveeLyecfgtdkklv.lnYcisvAfG 87 
                 ++ p + k+k+ v +  t+ +++  ++k++kl  ++ +fl+v +           Ps   +++ +y+++  ++ ++ ++Y+ +  fG
  KOO22243.1  37 ASLPDIDKRKFLVPSDLTIGQFMYVIRKRIKLAPEQAIFLFVASgtpsgkpsGILPSSVATLKAVYDQHCAEDGFLyMTYSGENVFG 123
                 5678999***********************************872221111124466667778888888765555549999888877 PP

  == domain 2  score: 18.3 bits;  conditional E-value: 5.1e-07
                 TTS---S--EEEEETTSBHHHHHHHHHHHCT-.SSSS-EEEETTTB---TTSBHHHHHHHH-BTTEEE.EEEE CS
       APG12  10 gdvpilkkkklkvnasdtvakvilflkkeLklqaseslflYvnnsFaPsPdeeveeLyecfgtdkklv.lnYc 81 
                 ++ p + k+k+ v +  t+ +++  ++k++kl  ++++fl+v +   P    +++ + +++  d+ ++ ++Y+
  KOO22243.1 172 ASLPDMDKRKFLVPSDLTIGQFTYVIRKRIKLGDEQDIFLFVASGTLPPSVATLKAVDDQHCADDGFLyMTYS 244
                 578999*************************************999998889999999999988877768886 PP

>> Il2rg  Putative Interleukin 2 receptor, gamma chain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.5   0.0     0.001       4.7       3      42 ..      43      82 ..      42      88 .. 0.91
   2 ?    5.9   0.0    0.0035        16       3      43 ..     178     218 ..     177     237 .. 0.88

  Alignments for each domain:
  == domain 1  score: 7.5 bits;  conditional E-value: 0.001
       Il2rg  3 dnqeeLvNpnCsvvnLlehirekcglekeevidLldesGe 42
                d++++Lv ++ ++  +++ ir++++l++e+ i L   sG+
  KOO22243.1 43 DKRKFLVPSDLTIGQFMYVIRKRIKLAPEQAIFLFVASGT 82
                678999999999********************99988886 PP

  == domain 2  score: 5.9 bits;  conditional E-value: 0.0035
       Il2rg   3 dnqeeLvNpnCsvvnLlehirekcglekeevidLldesGev 43 
                 d++++Lv ++ ++  +++ ir++++l +e+ i L   sG++
  KOO22243.1 178 DKRKFLVPSDLTIGQFTYVIRKRIKLGDEQDIFLFVASGTL 218
                 778999999999********************999999986 PP

>> PRiA4_ORF3  Plasmid pRiA4b ORF-3-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.9   0.0    0.0021       9.2      18      41 ..      45      68 ..      38     113 .. 0.81
   2 ?    6.7   0.0    0.0012       5.5      18      50 ..     180     213 ..     176     239 .. 0.81

  Alignments for each domain:
  == domain 1  score: 5.9 bits;  conditional E-value: 0.0021
  PRiA4_ORF3 18 RrlevpeditlarLhevlqaafgw 41
                R+++vp+d+t+ ++ +v+ +  + 
  KOO22243.1 45 RKFLVPSDLTIGQFMYVIRKRIKL 68
                9*****************987766 PP

  == domain 2  score: 6.7 bits;  conditional E-value: 0.0012
  PRiA4_ORF3  18 RrlevpeditlarLhevlqaafgw.edyHlheFe 50 
                 R+++vp+d+t+ ++ +v+ +  +  +++ ++ F 
  KOO22243.1 180 RKFLVPSDLTIGQFTYVIRKRIKLgDEQDIFLFV 213
                 9*****************9988773445566665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (251 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       242  (0.0134977); expected 358.6 (0.02)
Passed bias filter:                      235  (0.0131073); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.41u 0.24s 00:00:00.64 Elapsed: 00:00:00.39
# Mc/sec: 1915.30
//
Query:       KOO22244.1  [L=574]
Description: hypothetical protein Ctob_003679 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (574 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       450  (0.025099); expected 358.6 (0.02)
Passed bias filter:                      391  (0.0218082); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.53u 0.22s 00:00:00.75 Elapsed: 00:00:00.39
# Mc/sec: 4435.05
//
Query:       KOO22245.1  [L=1545]
Description: ATP-binding cassette superfamily [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.1e-41  142.5   0.0    1.8e-20   73.8   0.0    2.7  2  ABC_tran         ABC transporter
      2e-38  132.1   2.5    9.2e-32  110.3   0.0    4.2  4  ECH_1            Enoyl-CoA hydratase/isomerase
    1.6e-19   70.8   0.1    7.6e-06   25.9   0.0    4.2  4  AAA_21           AAA domain, putative AbiEii toxin, Type IV T
    9.2e-17   61.5   0.0    2.1e-16   60.4   0.0    1.6  1  ECH_2            Enoyl-CoA hydratase/isomerase
    1.8e-13   50.5   1.1    9.6e-13   48.1   0.4    2.2  2  Chal_sti_synt_N  Chalcone and stilbene synthases, N-terminal 
    5.4e-13   48.8   6.2    1.1e-12   47.8   6.2    1.4  1  ABC_tran_Xtn     ABC transporter
    8.3e-12   45.0   0.0       0.11   11.9   0.0    4.4  4  SMC_N            RecF/RecN/SMC N terminal domain
    1.1e-11   45.0   0.0    3.2e-11   43.4   0.0    1.8  1  Chal_sti_synt_C  Chalcone and stilbene synthases, C-terminal 
    3.9e-11   42.8   0.0    9.4e-11   41.5   0.0    1.5  1  FAE1_CUT1_RppA   FAE1/Type III polyketide synthase-like prote
    4.2e-09   36.5   0.2    1.6e-08   34.6   0.0    2.2  1  ACP_syn_III_C    3-Oxoacyl-[acyl-carrier-protein (ACP)] synth
    1.4e-07   31.2   0.2      0.029   14.1   0.0    2.6  2  AAA_29           P-loop containing region of AAA domain
    1.4e-06   28.4   0.0     0.0035   17.3   0.0    2.8  2  NACHT            NACHT domain
    4.3e-06   27.4   5.6       0.02   15.4   0.0    2.7  2  AAA_23           AAA domain
    0.00014   22.3   1.0       0.47   10.8   0.0    3.3  2  AAA_16           AAA ATPase domain
    0.00017   21.6   0.1        0.1   12.5   0.0    2.5  2  RsgA_GTPase      RsgA GTPase
     0.0002   21.8   0.1        0.9   10.0   0.0    3.1  2  AAA              ATPase family associated with various cellul
    0.00026   21.3   0.2       0.14   12.4   0.1    2.8  2  AAA_28           AAA domain
    0.00037   21.0   0.1        1.7    9.2   0.0    2.7  2  AAA_18           AAA domain
    0.00043   20.1   5.0      0.016   15.0   0.1    3.3  3  AAA_30           AAA domain
    0.00059   19.7   0.1       0.89    9.2   0.0    2.2  2  AAA_15           AAA ATPase domain
     0.0016   18.1   0.1       0.34   10.5   0.0    2.4  2  AAA_27           AAA domain
     0.0018   18.2   0.9       0.71    9.8   0.1    3.1  3  Rad17            Rad17 P-loop domain
     0.0058   16.8   0.0        5.5    7.1   0.0    3.0  2  AAA_33           AAA domain
     0.0073   15.2   0.1      0.013   14.4   0.1    1.3  1  DUF2791          P-loop Domain of unknown function (DUF2791)
     0.0088   16.4   0.0          6    7.3   0.0    2.4  2  RNA_helicase     RNA helicase
     0.0094   16.2   1.3        6.7    7.0   0.0    3.4  2  AAA_22           AAA domain
     0.0095   15.1   0.1        4.5    6.4   0.0    2.3  2  DUF815           Protein of unknown function (DUF815)
  ------ inclusion threshold ------
      0.013   15.2   1.0       0.23   11.1   0.2    2.3  2  SRP54            SRP54-type protein, GTPase domain
      0.017   14.2   0.3       0.25   10.4   0.1    2.2  2  T2SSE            Type II/IV secretion system protein
      0.018   15.1   0.1         11    6.2   0.0    2.6  2  MMR_HSR1         50S ribosome-binding GTPase
      0.019   14.2   0.1          3    6.9   0.0    2.2  2  DAP3             Mitochondrial ribosomal death-associated pro
      0.033   14.2   0.0         13    5.8   0.0    2.5  2  AAA_14           AAA domain
      0.053   13.8   0.0          2    8.7   0.0    3.2  2  SbcCD_C          Putative exonuclease SbcCD, C subunit
      0.065   13.7   0.9        3.7    8.0   0.1    2.8  2  AAA_17           AAA domain
      0.076   13.0   0.0         11    6.0   0.0    2.7  2  TsaE             Threonylcarbamoyl adenosine biosynthesis pro
      0.085   12.9   0.1         14    5.7   0.0    2.5  2  AAA_5            AAA domain (dynein-related subfamily)
      0.097   12.3   0.1         24    4.5   0.0    3.0  3  cobW             CobW/HypB/UreG, nucleotide-binding domain
       0.12   11.5   0.0        2.1    7.4   0.0    2.1  2  G-alpha          G-protein alpha subunit
       0.13   11.7   0.0       0.36   10.2   0.0    1.8  1  Arf              ADP-ribosylation factor family
       0.15   11.8   0.0        2.2    7.9   0.0    2.3  2  Viral_helicase1  Viral (Superfamily 1) RNA helicase
       0.19   10.3   0.4         13    4.3   0.0    2.5  3  AAA_13           AAA domain
       0.22   11.4   0.1         24    4.8   0.0    2.6  2  NTPase_1         NTPase
        1.8    7.3   3.9         13    4.4   0.0    2.9  3  ABC_ATPase       Predicted ATPase of the ABC class


Domain annotation for each model (and alignments):
>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   73.8   0.0   4.4e-23   1.8e-20       3     137 .]     987    1156 ..     985    1156 .. 0.85
   2 !   66.0   0.0   1.1e-20   4.7e-18       3     137 .]    1317    1451 ..    1315    1451 .. 0.86

  Alignments for each domain:
  == domain 1  score: 73.8 bits;  conditional E-value: 4.4e-23
                  EEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--...SEEEEEETTCEGGGB-HHHCCHCEEEE-SS--S-TTSBHHHH................. CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx................. RF
    ABC_tran    3 nvslklkegekvaivGenGaGKStLlkllagllkp...teGeilldgkdlkeqeleslrkeigvlpqepqlfpeltvren................. 79  
                  +v++++ + +++ai G nG+GKStLl+++a   k    +eG il+d           +  ++g+l+q++   ++ tvre+                 
  KOO22245.1  987 DVNWDIMPKSRWAIQGTNGCGKSTLLRAIAASAKGdklEEGLILVD-----------ATLRMGMLEQTAVSGSDNTVREEvvsrmarfqaatkalna 1072
                  799***************************9998877799999555...........6667777777777777777777777777777777888888 PP

                  .............................HHHTCHHHHHHHSTTGGTTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTTT CS
                  .............................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran   80 .............................esdeeiekalsklglkelkdtvvksspssLSgGqkqrvalarallkkpkllllDEpta 137 
                                               + +++++k+l+ lg k    +  +s+ ss+SgG++ r+ lar+ll++p+ll++DEpt+
  KOO22245.1 1073 avencvlgseeelaclekaqeefeacggyDIEARVSKVLQGLGFKP---EEFDSKCSSFSGGWQMRIGLARLLLSEPELLIMDEPTN 1156
                  88889**999999999888887877777777777999999999666...8889999******************************8 PP

  == domain 2  score: 66.0 bits;  conditional E-value: 1.1e-20
                  EEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGG........B-HHHCCHCEEEE-SS--S-TTSBHHHHHHHTCHHHHHHH CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx........xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran    3 nvslklkegekvaivGenGaGKStLlkllagllkpteGeilldgkdlke........qeleslrkeigvlpqepqlfpeltvrenesdeeiekalsk 91  
                  + +l++ +g ++ + G+nGaGKSt+lk+l+g  k ++ +++++++ lk         q+l++     +++ q+ ++ + +       +e++ +++ +
  KOO22245.1 1317 EANLEVLKGMRLILRGPNGAGKSTILKALSGTIKLEKPSMRFEDERLKLgvfaqdlaQDLPQDMGACEYVAQTVRVADPS-----ITEEKCRTIMGS 1408
                  5789999*********************************9999999997777777777777777777777775544444.....57899******* PP

                  STTGGTTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTTT CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran   92 lglkelkdtvvksspssLSgGqkqrvalarallkkpkllllDEpta 137 
                  lgl++  ++ + ++ + LSgG+k rvala   l+  +++llDEpt+
  KOO22245.1 1409 LGLVG--EKAL-RQIRDLSGGEKARVALATFCLSPYNVILLDEPTN 1451
                  ****9..3333.678******************************8 PP

>> ECH_1  Enoyl-CoA hydratase/isomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.9   0.0    0.0082       3.4      80     183 ..      75     185 ..      65     189 .. 0.76
   2 !   10.7   0.3   0.00055      0.23      77     166 ..     207     296 ..     200     297 .. 0.78
   3 !  110.3   0.0   2.2e-34   9.2e-32       3     191 ..     348     532 ..     347     561 .. 0.90
   4 ?   -0.5   0.0       1.5   6.1e+02       9      54 ..    1444    1482 ..    1442    1489 .. 0.82

  Alignments for each domain:
  == domain 1  score: 6.9 bits;  conditional E-value: 0.0082
                 HHHHHHHSSSEEEEEE-SEEETHHHHHHHHSSEEE.EETTTEEE-GGGG.GTS--.....CTTCHHHHHHHHHHHHHHHHHHHT-EEEHHHHHHCTSSS CS
       ECH_1  80 lwtklytvpkpviaavnGaaigGGlelalacDivi.aadnasfglnelk.lGlip.....gaggtqilarkvGkskAeeilllgkkisaqealkvGlvd 171
                  + kl++  + ++aa+ Ga     l lalacD++   ad+   + + ++  G +      + +    la   G  +A+++l  +++ +  e+l+  +v 
  KOO22245.1  75 ALAKLQKRSLLLVAALDGALCDLSLSLALACDFRLgTADTCLPARPASQaTGATQpyvplPIWWLASLALHAGVLRAQKLLWRTQPAGTHELLDCHVVH 173
                 567899999************************984455554444433314555411113578888889999999********************9*99 PP

                 EEESGGGHHHHH CS
       ECH_1 172 kvvpeeqlleea 183
                 + +p    l+ a
  KOO22245.1 174 ALCPTVAALHAA 185
                 999996655555 PP

  == domain 2  score: 10.7 bits;  conditional E-value: 0.00055
                 HHHHHHHHHHSSSEEEEEE-SEEETHH..HHHHHHSSEEEEETTTE..EE-GGGGGTS--CTTCHHHHHHHHHHHHHHHHHHHT-EEEHHHHHH CS
       ECH_1  77 vlelwtklytvpkpviaavnGaaigGG..lelalacDiviaadnas..fglnelklGlipgaggtqilarkvGkskAeeilllgkkisaqealk 166
                 +++ +  l t+p+p++  + G +  G   l++a acD++ aa +    fg   +  G++p   + ++la+ vG   A+ ++    +++  eal+
  KOO22245.1 207 LEKALASLNTLPLPTVCVLVGTGSVGAtaLQIAFACDLRAAAPSVTldFG---AASGTLP-GTLAFRLAKHVGAGVAMALMAQDSPLGTTEALR 296
                 567788999********999887766511567889****99876654444...4579999.67889************9999988899888876 PP

  == domain 3  score: 110.3 bits;  conditional E-value: 2.2e-34
                 ETTEEEEEE--CGCTTEE-HHHHHHHHHHHHHHHHSTTECEEEEEE.BTSEEEEEB-HHHHHHHHCHHHHHHHCCHHHHHHHHHHSSSEEEEEE-SEEE CS
       ECH_1   3 eagvaviklnrPeavNalsaelltEliqalekleddksvravvLtG.gdkaFaaGadlkemaeeekakqallkeevlelwtklytvpkpviaavnGaai 100
                 + ++a +++nrP  +Na +  +l+ l   +  l  +   + v+  +  +++F++Gadl+ + +   +  + l+ + +  ++ l + p + ia v+Gaa+
  KOO22245.1 348 QGALAIVTINRPSYANAYDGPMLDALERLIPMLSAQ-RCGCVIFKSsDPRFFCSGADLERVSNP--RAMDALELQSQRVFESLAKAPFVSIAVVEGAAV 443
                 678999****************99998888888777.9********999***********9995..89999999************************* PP

                 THHHHHHHHSSEEEEETTTEEE-GGGGGTS--CTTCHHHHHHHHHHHHHHHHHHHT-EEEHHHHHHCTSSSEEESGGGHHHHHHHHHHHHH CS
       ECH_1 101 gGGlelalacDiviaadnasfglnelklGlipgaggtqilarkvGkskAeeilllgkkisaqealkvGlvdkvvpeeqlleealelaekla 191
                 +GG+e alacD++ ++  a+f l+e+ lGl+p+agg  +l+ +vG ++A++++l+  ++sa+ al++Gl     p    l  alela+kl 
  KOO22245.1 444 AGGFEWALACDVRLVGPGARFWLPETSLGLVPAAGGCTRLTEAVGAARAKQVILFHGRLSANSALEWGLALSLSPTP--LTAALELAAKLG 532
                 *********************************************************************99988864..566777777776 PP

  == domain 4  score: -0.5 bits;  conditional E-value: 1.5
                  EEE--CGCTTEE-HHHHHHHHHHHHHHHHSTTECEEEEEEBTSEEE CS
       ECH_1    9 iklnrPeavNalsaelltEliqalekleddksvravvLtGgdkaFa 54  
                  i l++P   N l+ e ++ l++a+ + e      avv+ + d+aF+
  KOO22245.1 1444 ILLDEP--TNHLDVEAIAALLDAIGRYEG-----AVVVVSHDRAFC 1482
                  667777..899999999999999988775.....59999******9 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.9   0.0   0.00035      0.15       6      36 ..    1002    1026 ..     999    1046 .. 0.81
   2 !   12.5   0.0   0.00022     0.091     250     301 ..    1141    1186 ..    1133    1188 .. 0.79
   3 !   15.0   0.0     4e-05     0.017       5      21 ..    1331    1347 ..    1328    1373 .. 0.85
   4 !   25.9   0.0   1.8e-08   7.6e-06     231     298 ..    1417    1478 ..    1406    1483 .. 0.88

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 0.00035
      AAA_21    6 GpNgsGKSnLLdaldllarldrdvegltdel 36  
                  G Ng+GKS+LL+a+      +++++g++ e+
  KOO22245.1 1002 GTNGCGKSTLLRAI------AASAKGDKLEE 1026
                  99************......66666666665 PP

  == domain 2  score: 12.5 bits;  conditional E-value: 0.00022
      AAA_21  250 allralkkgsllliDEpEngLHPkllrrllellkelsrngaQviltTHSpll 301 
                  +ll+ +    ll+ DEp n+L+ ++ r l   + e    ++ v++++H+ ++
  KOO22245.1 1141 LLLSEP---ELLIMDEPTNHLDASARRWLGNYVGEY---DGTVLVVSHDAEF 1186
                  444444...9********************777444...679******9876 PP

  == domain 3  score: 15.0 bits;  conditional E-value: 4e-05
      AAA_21    5 iGpNgsGKSnLLdaldl 21  
                   GpNg+GKS++L+al++
  KOO22245.1 1331 RGPNGAGKSTILKALSG 1347
                  5**************75 PP

  == domain 4  score: 25.9 bits;  conditional E-value: 1.8e-08
      AAA_21  231 elparelSdGtkrllalltallralkkgsllliDEpEngLHPkllrrllellkelsrngaQviltTHS 298 
                   +++r+lS G k   al+t +l+      ++l+DEp n+L+ ++++ ll+ + + +     v++++H+
  KOO22245.1 1417 LRQIRDLSGGEKARVALATFCLSPY---NVILLDEPTNHLDVEAIAALLDAIGRYEG---AVVVVSHD 1478
                  6789********999********99...89**********************55544...69999998 PP

>> ECH_2  Enoyl-CoA hydratase/isomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.4   0.0     5e-19   2.1e-16       2     200 ..     352     542 ..     351     567 .. 0.85

  Alignments for each domain:
  == domain 1  score: 60.4 bits;  conditional E-value: 5e-19
                 EEEEE--GGGTT-B-HHHHHHHHHHHHHHCC-TT-SEEEEEESSSSECE--B--HHHHHHHHCS-THHHHHHHHHHHHHHHHHC-SS-EEEEE-BEEET CS
       ECH_2   2 gvitLnrpkalNaLslemvralkealkewekddevklvvlkgagekafCAGgDvralyeaakegkkeeeeffreeYklnyliatypkpvvalmdGivmG 100
                 +++t+nrp+  Na + +m++al++ +    + +++ +v+ k++ ++ fC+G D++++ + +  ++ e      +  ++   +a+ p   +a+++G ++ 
  KOO22245.1 352 AIVTINRPSYANAYDGPMLDALERLIPM-LSAQRCGCVIFKSSDPRFFCSGADLERVSNPRAMDALE-----LQSQRVFESLAKAPFVSIAVVEGAAVA 444
                 689*******************987766.57899************************999997655.....467788899****************** PP

                 HHHHHHTTSSEEEE-TT-EEE--GGGGT----TTHHHHHHCSST.THHHHHHHH---B-HHHHHHTTS--EE--GGGHHHHHHHHHTT........--- CS
       ECH_2 101 gGvGlsvhgsfrvvtertvfAmPEtaIGlfPDvGgsyfLsrlpg.elGlylalTGarlkgadalaaglathyvpseklealeeaLaelessdeeaveev 198
                 gG   ++ + +r v   ++f  PEt++Gl+P  Gg   L+ + g + ++ + l   rl+++ al+ gla  + p+   +ale a +     +++a++++
  KOO22245.1 445 GGFEWALACDVRLVGPGARFWLPETSLGLVPAAGGCTRLTEAVGaARAKQVILFHGRLSANSALEWGLALSLSPTPLTAALELAAKLG---TDQALART 540
                 ****************************************997747799999*****************9999998888776433222...12344444 PP

                 -- CS
       ECH_2 199 le 200
                 l+
  KOO22245.1 541 LA 542
                 44 PP

>> Chal_sti_synt_N  Chalcone and stilbene synthases, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.3   0.0       1.5   6.1e+02      11      35 ..     575     599 ..     570     602 .. 0.86
   2 !   48.1   0.4   2.3e-15   9.6e-13     101     221 ..     649     770 ..     642     774 .. 0.92

  Alignments for each domain:
  == domain 1  score: -0.3 bits;  conditional E-value: 1.5
  Chal_sti_synt_N  11 eGkatllalGkalPeqvveqeklvd 35 
                      + +a+l+ +G+a Pe+  +q+++++
       KOO22245.1 575 KPRAVLVGIGTAAPEERYTQAEVAN 599
                      56799************99999876 PP

  == domain 2  score: 48.1 bits;  conditional E-value: 2.3e-15
  Chal_sti_synt_N 101 klgkeaalkalkewGrPkskithlvfvsssevelPGadlklakklGlrpsvkrvmlyflGcygGatvlrlakdiaennkGarvlvvaseitvlg 194
                      kl+++a  +a +  G   +++  lv +++++   PG   ++a++l l ++++rv +  +Gc++G  ++ +a   ae n+G   ++ a+e+   g
       KOO22245.1 649 KLAASAIPQACEAAGVALDQVGFLVVCTTTGFSSPGLSAHVANHLRLPSTIQRVDIVGMGCHAGLNCMATAAHWAEANPGVPAVMFACEVVSAG 742
                      78999999999999*******************************************************************9999999999888 PP

  Chal_sti_synt_N 195 fr.gPskdrlddlvGaalfGdGaaavii 221
                      +    sk  l   + ++lfGdG+aa+++
       KOO22245.1 743 YVwDASKPDLAVALTNSLFGDGSAAAVL 770
                      852677888888889********99975 PP

>> ABC_tran_Xtn  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.8   6.2   2.5e-15   1.1e-12       2      72 ..    1196    1267 ..    1195    1277 .. 0.91

  Alignments for each domain:
  == domain 1  score: 47.8 bits;  conditional E-value: 2.5e-15
  ABC_tran_Xtn    2 elengklteYk.GnYseyleekeerleqqqkayekqqkeikkleefIerfrakakkakqaqsrekaLeklek 72  
                    e+ +g+l+ Yk   +++yl e+eer+++ +++ e+q++e+k++++fI r++aka+ka+qa  r+ +Lekl  
    KOO22245.1 1196 EVAGGRLELYKsMSFDKYLTEREERQARIRSTIEAQERERKRMQDFIGRMGAKASKASQAADRKGKLEKLAI 1267
                    78899999998469*******************************************************944 PP

>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.3   0.0    0.0017      0.71      26      44 ..     997    1015 ..     990    1025 .. 0.88
   2 !    8.9   0.0    0.0022      0.91     158     209 ..    1145    1195 ..    1052    1201 .. 0.85
   3 !    8.9   0.0    0.0022      0.92      28      45 ..    1329    1346 ..    1315    1369 .. 0.78
   4 !   11.9   0.0   0.00026      0.11     136     205 ..    1422    1485 ..    1386    1498 .. 0.85

  Alignments for each domain:
  == domain 1  score: 9.3 bits;  conditional E-value: 0.0017
                  EEEEEESTTSSHHHHHHHH CS
                  xxxxxxxxxxxxxxxxxxx RF
       SMC_N   26 ftaivGpNGSGKsnlldAi 44  
                    ai G NG+GKs ll Ai
  KOO22245.1  997 RWAIQGTNGCGKSTLLRAI 1015
                  5689**************9 PP

  == domain 2  score: 8.9 bits;  conditional E-value: 0.0022
                  --SEEEECTTTTTS-HHHHHHHHHHHHHHCTTSEEEEE-SSHHHCCC-.SCEE CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxx RF
       SMC_N  158 paplyllDeidaaLDeknvkkvaellkeksknaQfivislreemleka.dklv 209 
                     l ++De   +LD++ ++ + +++ e      ++v+s+++e++++a d++ 
  KOO22245.1 1145 EPELLIMDEPTNHLDASARRWLGNYVGEYD--GTVLVVSHDAEFVRRAaDSIA 1195
                  445889**********************99..89***********99845554 PP

  == domain 3  score: 8.9 bits;  conditional E-value: 0.0022
                  EEEESTTSSHHHHHHHHH CS
                  xxxxxxxxxxxxxxxxxx RF
       SMC_N   28 aivGpNGSGKsnlldAil 45  
                  ++ GpNG+GKs +l A++
  KOO22245.1 1329 ILRGPNGAGKSTILKALS 1346
                  356*************96 PP

  == domain 4  score: 11.9 bits;  conditional E-value: 0.00026
                  CS-HHHHHHHHHHHHHHHHCCS--SEEEECTTTTTS-HHHHHHHHHHHHHHCTTSEEEEE-SSHHHCCC- CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N  136 lLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvkkvaellkeksknaQfivislreemleka 205 
                   LSgGek+ vala        +p  + llDe   +LD + ++++ + + + +    ++v+s+++ ++e  
  KOO22245.1 1422 DLSGGEKARVALAT----FCLSPYNVILLDEPTNHLDVEAIAALLDAIGRYE--GAVVVVSHDRAFCETI 1485
                  79******999864....4788999***********************9988..8899****99988875 PP

>> Chal_sti_synt_C  Chalcone and stilbene synthases, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.4   0.0   7.8e-14   3.2e-11      27     149 ..     817     932 ..     796     934 .. 0.89

  Alignments for each domain:
  == domain 1  score: 43.4 bits;  conditional E-value: 7.8e-14
  Chal_sti_synt_C  27 tfkllrdlPekieenieeflkklleklGieefndlfwivhPGGpaildrleaklklekekleasrkvlseyGnvssatvlyvldelrdkelkkk 120
                      +f +  ++P ++  +i  ++++ll+k   ++ +   w+vh GG+ +ld +   l+l k+ ++ s + l+  Gn+ss + l+  + l      +k
       KOO22245.1 817 SFTISPQVPYLMGLKIPGMVHRLLAKHRLRKEDIAHWVVHSGGKKVLDCVMYSLGLSKHAIRHSLNSLRAMGNMSSGSFLWAYESLLR----EK 906
                      6889999*******************999999999***********************************************998755....45 PP

  Chal_sti_synt_C 121 lattgegkewGlllafGPGltietlllrs 149
                       a+     e+G+ +++GPG  +e   l +
       KOO22245.1 907 IAKR---GEYGMFITMGPGAGVECAFLTA 932
                      5555...48*************9987765 PP

>> FAE1_CUT1_RppA  FAE1/Type III polyketide synthase-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.5   0.0   2.2e-13   9.4e-11      86     203 ..     650     770 ..     636     782 .. 0.87

  Alignments for each domain:
  == domain 1  score: 41.5 bits;  conditional E-value: 2.2e-13
  FAE1_CUT1_RppA  86 vlfgavdellaktkvspkdidilvvncslfsptPslsamvvnryklredvksynLsgmGCsAglisidlaknllqvhkntlalvvstEnitlnwY 180
                     +  +a+ +  + ++v  +++++lvv +++  ++P lsa v n+ +l + ++ +++ gmGC Agl  +  a +  +++++  a++ + E +++ + 
      KOO22245.1 650 LAASAIPQACEAAGVALDQVGFLVVCTTTGFSSPGLSAHVANHLRLPSTIQRVDIVGMGCHAGLNCMATAAHWAEANPGVPAVMFACEVVSAGYV 744
                     55677777888899999************99***********************************************************99887 PP

  FAE1_CUT1_RppA 181 vGner...smllanclFRvGgaavll 203
                        ++   ++ l+n+lF  G+aa++l
      KOO22245.1 745 WDASKpdlAVALTNSLFGDGSAAAVL 770
                     777772235669********987554 PP

>> ACP_syn_III_C  3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.6   0.0   3.9e-11   1.6e-08       1      88 [.     840     930 ..     840     932 .. 0.94

  Alignments for each domain:
  == domain 1  score: 34.6 bits;  conditional E-value: 3.9e-11
                    HHHTT--GGG-SEEEE-SSSHHHHHHHHHHHT--GG...GB--THHHH-B-GGGHHHHHHHHHHHTTSS-TT-EEEEEEEETTTEEEEEEE CS
  ACP_syn_III_C   1 Lekagltpedidalvphqanlriidavakklglpee...kvvvnldeyGntsaasiplaLdeaveegklkpgdlvllvgfGaGltwgaall 88 
                    L+k+ l++edi + v h   ++++d v+  lgl+++     +++l+ +Gn+s+ s + a + +++e+  k+g+  +++++G G  + +a l
     KOO22245.1 840 LAKHRLRKEDIAHWVVHSGGKKVLDCVMYSLGLSKHairHSLNSLRAMGNMSSGSFLWAYESLLREKIAKRGEYGMFITMGPGAGVECAFL 930
                    7899*******************************9886677888*************************************999888876 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.1   0.0   6.9e-05     0.029      16      44 ..     989    1017 ..     985    1023 .. 0.86
   2 !   14.1   0.0   7.1e-05      0.03      22      43 ..    1324    1346 ..    1316    1355 .. 0.84

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 6.9e-05
      AAA_29   16 tieidlkgatlltGpsGsGKSTllDAiqa 44  
                   ++i +k+   + G++G GKSTll Ai+a
  KOO22245.1  989 NWDIMPKSRWAIQGTNGCGKSTLLRAIAA 1017
                  57788888899*************99976 PP

  == domain 2  score: 14.1 bits;  conditional E-value: 7.1e-05
      AAA_29   22 kg.atlltGpsGsGKSTllDAiq 43  
                  kg   +l Gp+G+GKST+l A++
  KOO22245.1 1324 KGmRLILRGPNGAGKSTILKALS 1346
                  45567889***********9975 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   0.0   8.3e-06    0.0035       4      35 ..     999    1030 ..     996    1062 .. 0.83
   2 !    8.0   0.0    0.0058       2.4       3      28 ..    1328    1353 ..    1326    1387 .. 0.90

  Alignments for each domain:
  == domain 1  score: 17.3 bits;  conditional E-value: 8.3e-06
                  EEEC-TTTCHHHHHHHHHHHHCTS-SCCCC-S CS
       NACHT    4 ilqGeaGsGKTtLlqklalawaegklpqgafk 35  
                  ++qG +G+GK+tLl+ +a  ++ +kl++g   
  KOO22245.1  999 AIQGTNGCGKSTLLRAIAASAKGDKLEEGLIL 1030
                  79*********************999987544 PP

  == domain 2  score: 8.0 bits;  conditional E-value: 0.0058
                  EEEEC-TTTCHHHHHHHHHHHHCTS- CS
       NACHT    3 vilqGeaGsGKTtLlqklalawaegk 28  
                  +il+G++G GK+t l+ l  +++ +k
  KOO22245.1 1328 LILRGPNGAGKSTILKALSGTIKLEK 1353
                  79***************998888766 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.0   0.2   0.00013     0.052      24      42 ..    1000    1018 ..     998    1030 .. 0.86
   2 !   15.4   0.0   4.9e-05      0.02      24      40 ..    1330    1346 ..    1316    1372 .. 0.86

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 0.00013
      AAA_23   24 ItGpNGaGKTTildAikla 42  
                  I G NG+GK+T+l+Ai   
  KOO22245.1 1000 IQGTNGCGKSTLLRAIAAS 1018
                  88**************875 PP

  == domain 2  score: 15.4 bits;  conditional E-value: 4.9e-05
      AAA_23   24 ItGpNGaGKTTildAik 40  
                  + GpNGaGK+Til A+ 
  KOO22245.1 1330 LRGPNGAGKSTILKALS 1346
                  56*************96 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.8   0.0    0.0011      0.47      29      52 ..    1000    1027 ..     995    1128 .. 0.77
   2 !    8.5   0.0    0.0059       2.5      27      51 ..    1328    1352 ..    1314    1434 .. 0.77

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.0011
      AAA_16   29 lsGesGvGKsslvrellralekd....g 52  
                  + G  G+GKs+l+r+++ ++++d    g
  KOO22245.1 1000 IQGTNGCGKSTLLRAIAASAKGDkleeG 1027
                  7899*************99999866551 PP

  == domain 2  score: 8.5 bits;  conditional E-value: 0.0059
      AAA_16   27 vllsGesGvGKsslvrellralekd 51  
                  ++l+G+ G GKs+++++l   ++ +
  KOO22245.1 1328 LILRGPNGAGKSTILKALSGTIKLE 1352
                  78*************9998766544 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.3   0.0      0.02       8.2     102     123 ..     998    1019 ..     987    1060 .. 0.75
   2 !   12.5   0.0   0.00025       0.1      95     127 ..    1321    1353 ..    1308    1364 .. 0.83

  Alignments for each domain:
  == domain 1  score: 6.3 bits;  conditional E-value: 0.02
                   EEEECSTTSSHHHHHHHHCTT- CS
  RsgA_GTPase  102 svlvGqSGvGKStLinallpel 123 
                    ++ G  G GKStL+ a++ ++
   KOO22245.1  998 WAIQGTNGCGKSTLLRAIAASA 1019
                   5789*************99873 PP

  == domain 2  score: 12.5 bits;  conditional E-value: 0.00025
                   HHCTTSEEEEECSTTSSHHHHHHHHCTT----- CS
  RsgA_GTPase   95 ellkdktsvlvGqSGvGKStLinallpelelkt 127 
                   e+lk+   +l G+ G+GKSt+++al ++ +l+ 
   KOO22245.1 1321 EVLKGMRLILRGPNGAGKSTILKALSGTIKLEK 1353
                   78999999******************9988765 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.0   0.0    0.0022       0.9       4      24 ..    1001    1021 ..     999    1079 .. 0.73
   2 !    8.3   0.0    0.0069       2.9       2      25 ..    1329    1352 ..    1328    1474 .. 0.69

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.0022
                  ESSTTSSHHHHHHHHHHHHTH CS
         AAA    4 yGppGtGKTllakavakelgv 24  
                   G+ G+GK++l +a+a +++ 
  KOO22245.1 1001 QGTNGCGKSTLLRAIAASAKG 1021
                  699**************9863 PP

  == domain 2  score: 8.3 bits;  conditional E-value: 0.0069
                  EEESSTTSSHHHHHHHHHHHHTHE CS
         AAA    2 llyGppGtGKTllakavakelgve 25  
                  +l Gp G GK+++ ka+  +++ e
  KOO22245.1 1329 ILRGPNGAGKSTILKALSGTIKLE 1352
                  799**************9998754 PP

>> AAA_28  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.4   0.1   0.00034      0.14       3      39 ..     999    1043 ..     997    1084 .. 0.63
   2 ?    5.9   0.0     0.033        14       3      21 ..    1329    1347 ..    1327    1364 .. 0.86

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 0.00034
      AAA_28    3 vitGgestGKTtlleaLaar........gypvvpEaareileekl 39  
                  +i G+ ++GK+tll+a+aa         g   v  + r+ + e++
  KOO22245.1  999 AIQGTNGCGKSTLLRAIAASakgdkleeGLILVDATLRMGMLEQT 1043
                  799***************644444444466666666666665555 PP

  == domain 2  score: 5.9 bits;  conditional E-value: 0.033
      AAA_28    3 vitGgestGKTtlleaLaa 21  
                  ++ G+ ++GK+t+l+aL+ 
  KOO22245.1 1329 ILRGPNGAGKSTILKALSG 1347
                  788**************84 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.9   0.0    0.0049         2       3      30 ..    1000    1032 ..     999    1086 .. 0.70
   2 !    9.2   0.0     0.004       1.7       2      32 ..    1329    1373 ..    1328    1408 .. 0.65

  Alignments for each domain:
  == domain 1  score: 8.9 bits;  conditional E-value: 0.0049
      AAA_18    3 ltGtpGvGKttlakeLskrlgf.....gvnlrd 30  
                  + Gt G+GK+tl ++++ + +      g +l d
  KOO22245.1 1000 IQGTNGCGKSTLLRAIAASAKGdkleeGLILVD 1032
                  78**************77642124455555555 PP

  == domain 2  score: 9.2 bits;  conditional E-value: 0.004
      AAA_18    2 lltGtpGvGKttlakeLskrlgf..............gvnlrdva 32  
                  +l G+ G+GK+t+ k+Ls   ++              gv  +d+a
  KOO22245.1 1329 ILRGPNGAGKSTILKALSGTIKLekpsmrfederlklGVFAQDLA 1373
                  688**************6554443333333333333344444444 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.3         6   2.5e+03     100     138 ..     603     641 ..     516     649 .. 0.57
   2 ?    5.7   0.1     0.026        11      22      43 ..     999    1020 ..     993    1073 .. 0.88
   3 !   15.0   0.1   3.8e-05     0.016      21     123 ..    1328    1477 ..    1316    1490 .. 0.76

  Alignments for each domain:
  == domain 1  score: -2.0 bits;  conditional E-value: 6
      AAA_30 100 vdtkqlaallkaaekagakvilvGDerQlasVeaGgvlr 138
                 vd   ++a+ ++a+ ++ ++  +G e+  + V++Gg+l+
  KOO22245.1 603 VDDPRMRAIYSSAHIESRRLAEIGAEQRAGGVTQGGLLA 641
                 355566677777777677777777777777777777665 PP

  == domain 2  score: 5.7 bits;  conditional E-value: 0.026
      AAA_30   22 vltGpAGtGKttalkalreawe 43  
                  +++G  G GK+t+l+a+++ ++
  KOO22245.1  999 AIQGTNGCGKSTLLRAIAASAK 1020
                  689**************87665 PP

  == domain 3  score: 15.0 bits;  conditional E-value: 3.8e-05
      AAA_30   21 avltGpAGtGKttalkalreaweaag.......grviglAptgkaAkvLaeelgieastiakllkrlk............................. 81  
                   +l Gp G+GK+t+lkal  +++ ++       +r+ +    +  A++L +++g +++ +a+ ++  +                             
  KOO22245.1 1328 LILRGPNGAGKSTILKALSGTIKLEKpsmrfedERLKLGVFAQDLAQDLPQDMG-ACEYVAQTVRVADpsiteekcrtimgslglvgekalrqirdl 1423
                  689*****************9999977999999777777777788888888877.444444444333344456667777777777779999999999 PP

      AAA_30   82 ..........grarlepgtllivDEag.mvdtkqlaallkaaekag.akvilvG 123 
                            ++  l+p ++++ DE    +d + +aall+a+ +++ a v++  
  KOO22245.1 1424 sggekarvalATFCLSPYNVILLDEPTnHLDVEAIAALLDAIGRYEgAVVVVSH 1477
                  9999999999778888999******6516799999****999996515555544 PP

>> AAA_15  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.0   0.0    0.0048         2      30      44 ..    1002    1016 ..     995    1039 .. 0.90
   2 !    9.2   0.0    0.0021      0.89      27      44 ..    1329    1346 ..    1318    1372 .. 0.77

  Alignments for each domain:
  == domain 1  score: 8.0 bits;  conditional E-value: 0.0048
      AAA_15   30 GkNnsGKSsileald 44  
                  G+N++GKS++l+a+ 
  KOO22245.1 1002 GTNGCGKSTLLRAIA 1016
                  9************95 PP

  == domain 2  score: 9.2 bits;  conditional E-value: 0.0021
      AAA_15   27 vliGkNnsGKSsileald 44  
                  +l G+N++GKS+il+al 
  KOO22245.1 1329 ILRGPNGAGKSTILKALS 1346
                  566*************93 PP

>> AAA_27  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.9   0.0     0.042        18      31      47 ..    1000    1016 ..     994    1021 .. 0.92
   2 !   10.5   0.0   0.00082      0.34      30      47 ..    1329    1346 ..    1315    1373 .. 0.80

  Alignments for each domain:
  == domain 1  score: 4.9 bits;  conditional E-value: 0.042
      AAA_27   31 iyGpNEAGKstalrAis 47  
                  i G+N  GKst+lrAi 
  KOO22245.1 1000 IQGTNGCGKSTLLRAIA 1016
                  88*************96 PP

  == domain 2  score: 10.5 bits;  conditional E-value: 0.00082
      AAA_27   30 liyGpNEAGKstalrAis 47  
                  ++ GpN AGKst+l+A+s
  KOO22245.1 1329 ILRGPNGAGKSTILKALS 1346
                  456*************97 PP

>> Rad17  Rad17 P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.5   0.0     0.071        30      50      74 ..    1000    1025 ..     991    1072 .. 0.76
   2 ?    0.2   0.1       1.4   5.9e+02      17      58 ..    1251    1295 ..    1247    1300 .. 0.71
   3 !    9.8   0.1    0.0017      0.71      38      67 ..    1318    1347 ..    1295    1356 .. 0.78

  Alignments for each domain:
  == domain 1  score: 4.5 bits;  conditional E-value: 0.071
       Rad17   50 isGPsGCgkstvvkvLsk.elgiklr 74  
                  i G  GCgkst ++ ++    g kl+
  KOO22245.1 1000 IQGTNGCGKSTLLRAIAAsAKGDKLE 1025
                  889**********9876414455555 PP

  == domain 2  score: 0.2 bits;  conditional E-value: 1.4
       Rad17   17 kaeelavhkkkie..evkewl.kadvLesrkkriLLisGPsGCgk 58  
                  ka + a  k k+e  ++k++  +a  + +++k +L ++ P+ Cg 
  KOO22245.1 1251 KASQAADRKGKLEklAIKQAAaQALLIGEQRKPVLTLAKPPSCGM 1295
                  566777778888833466655155556677777**********95 PP

  == domain 3  score: 9.8 bits;  conditional E-value: 0.0017
       Rad17   38 dvLesrkkriLLisGPsGCgkstvvkvLsk 67  
                    Le  k   L++ GP G gkst++k Ls 
  KOO22245.1 1318 ANLEVLKGMRLILRGPNGAGKSTILKALSG 1347
                  5566666667999***************95 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.2   0.0     0.025        11       5      39 ..    1001    1041 ..     998    1082 .. 0.59
   2 ?    7.1   0.0     0.013       5.5       3      20 ..    1329    1346 ..    1328    1384 .. 0.82

  Alignments for each domain:
  == domain 1  score: 6.2 bits;  conditional E-value: 0.025
      AAA_33    5 vGlpGsGKstlaerllkklg......avllssdtlrrrlfg 39  
                   G +G+GKstl++ +++  +      + +l   tlr  + +
  KOO22245.1 1001 QGTNGCGKSTLLRAIAASAKgdkleeGLILVDATLRMGMLE 1041
                  699***********987766566666555555555554444 PP

  == domain 2  score: 7.1 bits;  conditional E-value: 0.013
      AAA_33    3 llvGlpGsGKstlaerll 20  
                  +l G++G+GKst ++ l 
  KOO22245.1 1329 ILRGPNGAGKSTILKALS 1346
                  799**********99885 PP

>> DUF2791  P-loop Domain of unknown function (DUF2791)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.4   0.1   3.1e-05     0.013      53     162 ..     999    1110 ..     995    1122 .. 0.82

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 3.1e-05
     DUF2791   53 firGeYGsGKtFllqllreral....ergfvvaeadls.perrLhgtkgqlealYrelvenlstktkpeggALrsildrwiseveeevaaegkeedd 144 
                  +i+G  G+GK+ ll+++++ a+    e+g++ ++a l       ++ +g+ +++ +e+v++++  +  +  AL++ +++ +   eee+a  +k   +
  KOO22245.1  999 AIQGTNGCGKSTLLRAIAASAKgdklEEGLILVDATLRmGMLEQTAVSGSDNTVREEVVSRMARFQAATK-ALNAAVENCVLGSEEELACLEK--AQ 1092
                  689***************999633337899*******97666777889***************9999998.****************998887..56 PP

     DUF2791  145 ealeaavekkieerlael 162 
                  e++ea     ie+r++++
  KOO22245.1 1093 EEFEACGGYDIEARVSKV 1110
                  666666666666666655 PP

>> RNA_helicase  RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.3   0.0     0.014         6       3      23 ..    1000    1020 ..     998    1036 .. 0.84
   2 ?    6.6   0.0     0.023       9.8       2      22 ..    1329    1349 ..    1328    1363 .. 0.80

  Alignments for each domain:
  == domain 1  score: 7.3 bits;  conditional E-value: 0.014
  RNA_helicase    3 lyGpsgeGKStlakeLakall 23  
                    ++G +g+GKStl + +a++  
    KOO22245.1 1000 IQGTNGCGKSTLLRAIAASAK 1020
                    89************9887655 PP

  == domain 2  score: 6.6 bits;  conditional E-value: 0.023
  RNA_helicase    2 wlyGpsgeGKStlakeLakal 22  
                    +l Gp+g GKSt+ k L+ ++
    KOO22245.1 1329 ILRGPNGAGKSTILKALSGTI 1349
                    789************976555 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.0   0.0     0.016       6.7       9      34 ..     999    1024 ..     994    1084 .. 0.78
   2 ?    6.2   0.0     0.029        12       8      30 ..    1328    1350 ..    1324    1475 .. 0.62

  Alignments for each domain:
  == domain 1  score: 7.0 bits;  conditional E-value: 0.016
      AAA_22    9 vvtGesGtGKTtllrrlleqldeeak 34  
                  ++ G  G+GK+tllr ++ +++ ++ 
  KOO22245.1  999 AIQGTNGCGKSTLLRAIAASAKGDKL 1024
                  57799************999865444 PP

  == domain 2  score: 6.2 bits;  conditional E-value: 0.029
      AAA_22    8 lvvtGesGtGKTtllrrlleqld 30  
                  l++ G+ G+GK+t l+ l  + +
  KOO22245.1 1328 LILRGPNGAGKSTILKALSGTIK 1350
                  6788************9987764 PP

>> DUF815  Protein of unknown function (DUF815)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.2   0.0     0.012       4.9      58      82 ..    1000    1024 ..     994    1042 .. 0.83
   2 ?    6.4   0.0     0.011       4.5      45      78 ..    1317    1350 ..    1310    1374 .. 0.83

  Alignments for each domain:
  == domain 1  score: 6.2 bits;  conditional E-value: 0.012
      DUF815   58 LwGarGtGKSslvkallneyaeegL 82  
                  + G+ G+GKS+l++a+ ++++ ++L
  KOO22245.1 1000 IQGTNGCGKSTLLRAIAASAKGDKL 1024
                  579**************99988775 PP

  == domain 2  score: 6.4 bits;  conditional E-value: 0.011
      DUF815   45 eqfleglpannvLLwGarGtGKSslvkallneya 78  
                  e+ le l+   ++L G  G+GKS+++kal  +++
  KOO22245.1 1317 EANLEVLKGMRLILRGPNGAGKSTILKALSGTIK 1350
                  5566677788899***************987765 PP

>> SRP54  SRP54-type protein, GTPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.2   0.00056      0.23       4      58 ..     998    1053 ..     995    1079 .. 0.77
   2 ?    2.2   0.0      0.29   1.2e+02       4      29 ..    1328    1353 ..    1326    1358 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00056
                  EEEEESTTSSHHHHHHHHHHHHHHTTS-EEEEEES.TSSTTHHHHHHHHHHHTTEE CS
       SRP54    4 illvGlqGaGKTttlaKLaallkkegkkvllvaaD.tfRaaAveQLktlaeklgvp 58  
                  +++ G++G GK t l  +aa  k ++ +  l+ +D t R++ +eQ ++ ++   v+
  KOO22245.1  998 WAIQGTNGCGKSTLLRAIAASAKGDKLEEGLILVDaTLRMGMLEQTAVSGSDNTVR 1053
                  5688*********************9999999999679*********999998875 PP

  == domain 2  score: 2.2 bits;  conditional E-value: 0.29
                  EEEEESTTSSHHHHHHHHHHHHHHTT CS
       SRP54    4 illvGlqGaGKTttlaKLaallkkeg 29  
                  ++l G++GaGK t l  L+  +k e+
  KOO22245.1 1328 LILRGPNGAGKSTILKALSGTIKLEK 1353
                  5789**********999988877665 PP

>> T2SSE  Type II/IV secretion system protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.3   0.0      0.36   1.5e+02     134     163 ..    1000    1031 ..     992    1059 .. 0.78
   2 ?   10.4   0.1   0.00059      0.25      75     156 ..    1280    1352 ..    1214    1362 .. 0.76

  Alignments for each domain:
  == domain 1  score: 1.3 bits;  conditional E-value: 0.36
       T2SSE  134 vsGgTgsGKttllyallkeinks..derivtv 163 
                  + G+ g GK+tll a+ +  + +  +e +++v
  KOO22245.1 1000 IQGTNGCGKSTLLRAIAASAKGDklEEGLILV 1031
                  6799*********9998877665446666666 PP

  == domain 2  score: 10.4 bits;  conditional E-value: 0.00059
       T2SSE   75 ekgvrlrvvllPvvagealviRkksakeltlddlgaeealkekiaevlrkavrerglilvsGgTgsGKttllyallkeinks 156 
                  +++  l ++ +P++    l++Rk + ++     lg++   +e+  evl+        +++ G+ g GK+t+l al  +i+ +
  KOO22245.1 1280 QRKPVLTLAKPPSCGMAPLALRKANIRH----PLGKQDIITEANLEVLKGM-----RLILRGPNGAGKSTILKALSGTIKLE 1352
                  4455567778888888999999766665....7889999999999999998.....8999***************9999876 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.2   0.0     0.025        11       3      22 ..     999    1018 ..     997    1027 .. 0.84
   2 ?    6.1   0.0     0.027        11       3      22 ..    1329    1348 ..    1327    1364 .. 0.82

  Alignments for each domain:
  == domain 1  score: 6.2 bits;  conditional E-value: 0.025
                  EEEESTTSSHHHHHHHHHTS CS
    MMR_HSR1    3 aivGrpNvGKStLinaltge 22  
                  ai G    GKStL++a+  +
  KOO22245.1  999 AIQGTNGCGKSTLLRAIAAS 1018
                  789999**********9865 PP

  == domain 2  score: 6.1 bits;  conditional E-value: 0.027
                  EEEESTTSSHHHHHHHHHTS CS
    MMR_HSR1    3 aivGrpNvGKStLinaltge 22  
                  ++ G   +GKSt+++al+g+
  KOO22245.1 1329 ILRGPNGAGKSTILKALSGT 1348
                  5679999**********996 PP

>> DAP3  Mitochondrial ribosomal death-associated protein 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.9   0.0    0.0072         3      22      47 ..     994    1019 ..     988    1031 .. 0.85
   2 ?    4.8   0.0     0.033        14      22      40 ..    1324    1342 ..    1314    1346 .. 0.86

  Alignments for each domain:
  == domain 1  score: 6.9 bits;  conditional E-value: 0.0072
                  ---EEEEE-SSSSSTTTTHHHHHHHG CS
        DAP3   22 kvkrlvltGekgsGKSvlLlqalayA 47  
                  ++ r  ++G +g+GKS+lL  + a A
  KOO22245.1  994 PKSRWAIQGTNGCGKSTLLRAIAASA 1019
                  678999************98887776 PP

  == domain 2  score: 4.8 bits;  conditional E-value: 0.033
                  ---EEEEE-SSSSSTTTTH CS
        DAP3   22 kvkrlvltGekgsGKSvlL 40  
                  k  rl+l G +g GKS+ L
  KOO22245.1 1324 KGMRLILRGPNGAGKSTIL 1342
                  778**************98 PP

>> AAA_14  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.8   0.0     0.031        13       6      26 ..     999    1019 ..     996    1035 .. 0.85
   2 ?    5.6   0.0     0.038        16       5      40 ..    1328    1360 ..    1324    1383 .. 0.74

  Alignments for each domain:
  == domain 1  score: 5.8 bits;  conditional E-value: 0.031
      AAA_14    6 vitGaRrvGKTtllkqlikel 26  
                  +i+G   +GK+tll+ ++ + 
  KOO22245.1  999 AIQGTNGCGKSTLLRAIAASA 1019
                  699***********9998765 PP

  == domain 2  score: 5.6 bits;  conditional E-value: 0.038
      AAA_14    5 lvitGaRrvGKTtllkqlikellvkkesilyinldd 40  
                  l+++G+  +GK+t+lk l  +      +   + ++d
  KOO22245.1 1328 LILRGPNGAGKSTILKALSGTIK---LEKPSMRFED 1360
                  799************99865443...4444455555 PP

>> SbcCD_C  Putative exonuclease SbcCD, C subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.5   0.0       1.8   7.3e+02      63      82 ..    1145    1164 ..    1119    1170 .. 0.85
   2 ?    8.7   0.0    0.0048         2      27      88 ..    1417    1465 ..    1410    1467 .. 0.77

  Alignments for each domain:
  == domain 1  score: 0.5 bits;  conditional E-value: 1.8
     SbcCD_C   63 alrlvfLDEAFsklDeesia 82  
                   ++l+++DE  + lD+  ++
  KOO22245.1 1145 EPELLIMDEPTNHLDASARR 1164
                  5899***********98876 PP

  == domain 2  score: 8.7 bits;  conditional E-value: 0.0048
     SbcCD_C   27 srssgtlSGGekqflaylalaaalaalyssaegrepalrlvfLDEAFsklDeesiatllell 88  
                   r+++ lSGGek   a +ala      ++      + + +++LDE  + lD e ia+ll+++
  KOO22245.1 1417 LRQIRDLSGGEK---ARVALA-----TFCL-----SPYNVILLDEPTNHLDVEAIAALLDAI 1465
                  578889999999...444444.....3344.....25899****************999875 PP

>> AAA_17  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.0   0.1     0.009       3.7       2      64 ..    1002    1064 ..    1001    1087 .. 0.75
   2 ?    3.2   0.1      0.26   1.1e+02       2      20 ..    1332    1350 ..    1331    1356 .. 0.83

  Alignments for each domain:
  == domain 1  score: 8.0 bits;  conditional E-value: 0.009
                  E-TTSSHHHHHHHHHHHHTEEEEEHHHHHHHHHHTTTSHSSHHHHCTSHHHHHHHHHHHHHHH CS
      AAA_17    2 GgPGsGKgtqceklvekygfthlsaGdllreeakrgglakardemrklpleekkelqkeaaek 64  
                  G  G+GK+t+++ ++   +   l+ G +l +   r g+ ++       + ++++ + ++a  +
  KOO22245.1 1002 GTNGCGKSTLLRAIAASAKGDKLEEGLILVDATLRMGMLEQTAVSGSDNTVREEVVSRMARFQ 1064
                  789***************************999999984444333344444455555555444 PP

  == domain 2  score: 3.2 bits;  conditional E-value: 0.26
                  E-TTSSHHHHHHHHHHHHT CS
      AAA_17    2 GgPGsGKgtqceklvekyg 20  
                  G+ G+GK+t+++ l   ++
  KOO22245.1 1332 GPNGAGKSTILKALSGTIK 1350
                  899********99976665 PP

>> TsaE  Threonylcarbamoyl adenosine biosynthesis protein TsaE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.9   0.0      0.12        52      21      43 ..     997    1019 ..     983    1025 .. 0.83
   2 ?    6.0   0.0     0.027        11      19      44 ..    1325    1350 ..    1308    1357 .. 0.76

  Alignments for each domain:
  == domain 1  score: 3.9 bits;  conditional E-value: 0.12
                  EEEEEESTTSSHHHHHHHHHHHT CS
        TsaE   21 vilLeGdLGaGKTtlvrglakal 43  
                   ++++G  G+GK+tl r++a++ 
  KOO22245.1  997 RWAIQGTNGCGKSTLLRAIAASA 1019
                  47899**************9875 PP

  == domain 2  score: 6.0 bits;  conditional E-value: 0.027
                  TEEEEEEESTTSSHHHHHHHHHHHTT CS
        TsaE   19 gdvilLeGdLGaGKTtlvrglakalg 44  
                  g  ++L+G+ GaGK+t+ ++l  +++
  KOO22245.1 1325 GMRLILRGPNGAGKSTILKALSGTIK 1350
                  5569***************9977665 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.5   0.0     0.078        32       4      27 ..    1000    1024 ..     998    1087 .. 0.83
   2 ?    5.7   0.0     0.033        14       2      23 ..    1328    1349 ..    1327    1360 .. 0.86

  Alignments for each domain:
  == domain 1  score: 4.5 bits;  conditional E-value: 0.078
                  EE--SSSSHHHHHHHGGGGB.S--E CS
       AAA_5    4 LvGppGtgKselaerlaaal.nrev 27  
                  ++G  G+gKs+l + +aa   ++++
  KOO22245.1 1000 IQGTNGCGKSTLLRAIAASAkGDKL 1024
                  689*************987755555 PP

  == domain 2  score: 5.7 bits;  conditional E-value: 0.033
                  EEEE--SSSSHHHHHHHGGGGB CS
       AAA_5    2 vlLvGppGtgKselaerlaaal 23  
                  ++L Gp G gKs++ + l+  +
  KOO22245.1 1328 LILRGPNGAGKSTILKALSGTI 1349
                  79**************999877 PP

>> cobW  CobW/HypB/UreG, nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.5   0.0     0.057        24       5      28 ..    1000    1023 ..     997    1034 .. 0.83
   2 ?   -1.4   0.0       3.5   1.5e+03      39      61 ..    1180    1202 ..    1177    1228 .. 0.78
   3 ?    3.8   0.0     0.093        39       3      20 ..    1328    1345 ..    1326    1362 .. 0.86

  Alignments for each domain:
  == domain 1  score: 4.5 bits;  conditional E-value: 0.057
                  EEESTTCCHHHHHHHHHCT--SS- CS
        cobW    5 ltGflGsGKTtLlnhllenraglk 28  
                  + G  G GK+tLl+++ + ++g k
  KOO22245.1 1000 IQGTNGCGKSTLLRAIAASAKGDK 1023
                  78999***********97766655 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 3.5
                  CHCCCCCCHCCCT.EEEETTTTE CS
        cobW   39 vsiDaellretgveivelenGci 61  
                  vs+Dae++r+++++i e++ G +
  KOO22245.1 1180 VSHDAEFVRRAADSIAEVAGGRL 1202
                  799********999****99976 PP

  == domain 3  score: 3.8 bits;  conditional E-value: 0.093
                  EEEEESTTCCHHHHHHHH CS
        cobW    3 tvltGflGsGKTtLlnhl 20  
                  ++l G+ G+GK+t+l++l
  KOO22245.1 1328 LILRGPNGAGKSTILKAL 1345
                  6899***********987 PP

>> G-alpha  G-protein alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.6   0.0       0.3   1.3e+02      26      44 ..     998    1016 ..     992    1068 .. 0.88
   2 ?    7.4   0.0     0.005       2.1      22      54 ..    1324    1361 ..    1304    1394 .. 0.77

  Alignments for each domain:
  == domain 1  score: 1.6 bits;  conditional E-value: 0.3
                  EEEEESTTSSHHHHHHHHH CS
     G-alpha   26 llllGqseSGKsTilkqlk 44  
                  + + G++++GKsT+l+ + 
  KOO22245.1  998 WAIQGTNGCGKSTLLRAIA 1016
                  66789**********9986 PP

  == domain 2  score: 7.4 bits;  conditional E-value: 0.005
                  .EEEEEEEESTTSSHHHHHHHHH...HHCS--..--HH CS
     G-alpha   22 revkllllGqseSGKsTilkqlk...llykkg..fsee 54  
                  + ++l+l G ++ GKsTilk l    +l+k++  f++e
  KOO22245.1 1324 KGMRLILRGPNGAGKSTILKALSgtiKLEKPSmrFEDE 1361
                  359******************99765566666444444 PP

>> Arf  ADP-ribosylation factor family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.0   0.00087      0.36      12      55 ..    1323    1365 ..    1312    1372 .. 0.83

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.00087
                  TTEEEEEEEESTTSSHHHHHHHHHHSSCEECSSSSSEEEEEEEE CS
         Arf   12 kkelrilllGLDnaGKtTilkklkleelvttvPTigfnveelei 55  
                   k +r++l G  +aGK+Tilk l+ + ++  +P + f+ e+l+ 
  KOO22245.1 1323 LKGMRLILRGPNGAGKSTILKALS-GTIKLEKPSMRFEDERLKL 1365
                  688*****************9996.6788899999999988875 PP

>> Viral_helicase1  Viral (Superfamily 1) RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.9   0.0    0.0054       2.2       3      21 ..    1000    1018 ..     999    1044 .. 0.86
   2 ?    0.9   0.0      0.74   3.1e+02       5      21 ..    1332    1348 ..    1328    1376 .. 0.72

  Alignments for each domain:
  == domain 1  score: 7.9 bits;  conditional E-value: 0.0054
  Viral_helicase1    3 vhGvpGcGKStlirkllrt 21  
                       ++G  GcGKStl+r ++ +
       KOO22245.1 1000 IQGTNGCGKSTLLRAIAAS 1018
                       78999*********99876 PP

  == domain 2  score: 0.9 bits;  conditional E-value: 0.74
  Viral_helicase1    5 GvpGcGKStlirkllrt 21  
                       G  G+GKSt+++ l  t
       KOO22245.1 1332 GPNGAGKSTILKALSGT 1348
                       556******99988877 PP

>> AAA_13  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.3   0.0     0.031        13      21      43 ..    1000    1022 ..     987    1042 .. 0.85
   2 ?   -3.4   1.0       6.5   2.7e+03     282     329 ..    1218    1265 ..    1209    1277 .. 0.58
   3 ?    3.1   0.0     0.069        29      23      51 ..    1332    1361 ..    1314    1380 .. 0.69

  Alignments for each domain:
  == domain 1  score: 4.3 bits;  conditional E-value: 0.031
      AAA_13   21 iYGwNGaGKTtLSrllrslelge 43  
                  i G+NG GK+tL r+++   +g 
  KOO22245.1 1000 IQGTNGCGKSTLLRAIAASAKGD 1022
                  77**************9876654 PP

  == domain 2  score: -3.4 bits;  conditional E-value: 6.5
      AAA_13  282 eekqerLekliekveskkselleklkavsdeasensafeedkeelkae 329 
                  ee q+r+ ++ie  e++++++++ +  + ++as+ s++++ k +l++ 
  KOO22245.1 1218 EERQARIRSTIEAQERERKRMQDFIGRMGAKASKASQAADRKGKLEKL 1265
                  455666666666666666666666666666666666655555555543 PP

  == domain 3  score: 3.1 bits;  conditional E-value: 0.069
      AAA_13   23 GwNGaGKTtLSrllrsl.elgetepkfang 51  
                  G NGaGK+t+ ++l+   +l++++ +f+ +
  KOO22245.1 1332 GPNGAGKSTILKALSGTiKLEKPSMRFEDE 1361
                  9*********99999751444555555444 PP

>> NTPase_1  NTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.7   0.0      0.12        51       3      26 ..     999    1022 ..     997    1035 .. 0.85
   2 ?    4.8   0.0     0.058        24       2      24 ..    1328    1350 ..    1327    1356 .. 0.86

  Alignments for each domain:
  == domain 1  score: 3.7 bits;  conditional E-value: 0.12
                  EEE--TTSSHHHHHHHHHHHH... CS
    NTPase_1    3 fiTGppGvGKtTlvkkvlellkss 26  
                  +i G  G GK+Tl++ ++   k +
  KOO22245.1  999 AIQGTNGCGKSTLLRAIAASAKGD 1022
                  688*************99887655 PP

  == domain 2  score: 4.8 bits;  conditional E-value: 0.058
                  EEEE--TTSSHHHHHHHHHHHH. CS
    NTPase_1    2 vfiTGppGvGKtTlvkkvlellk 24  
                  +++ Gp G GK+T++k ++ ++k
  KOO22245.1 1328 LILRGPNGAGKSTILKALSGTIK 1350
                  7899***********99988876 PP

>> ABC_ATPase  Predicted ATPase of the ABC class
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.4   0.0     0.032        13     248     267 ..     999    1018 ..     992    1026 .. 0.86
   2 ?   -0.0   0.3       0.7   2.9e+02      51     108 ..    1215    1271 ..    1202    1281 .. 0.80
   3 ?    1.5   0.1      0.25     1e+02     244     266 ..    1324    1347 ..    1316    1350 .. 0.80

  Alignments for each domain:
  == domain 1  score: 4.4 bits;  conditional E-value: 0.032
                  EEEE-TTSSHHHHHHHHHHC CS
  ABC_ATPase  248 lIvGggfhGKsTLLeAlekG 267 
                  +I G++  GKsTLL+A++++
  KOO22245.1  999 AIQGTNGCGKSTLLRAIAAS 1018
                  7999*************875 PP

  == domain 2  score: -0.0 bits;  conditional E-value: 0.7
                  EEEE--S-HHSSSSGS-HHHHHHHHHHHHHHHHHCC....CTT-SSS--S-EE----- CS
  ABC_ATPase   51 vsvpaavakleeellkskerrvaledfllrklkaelekltsksagsgksgalaidkks 108 
                   + + ++a++ +++++++ +r  ++df+ r  +++  k+++++ ++gk ++lai++  
  KOO22245.1 1215 TEREERQARIRSTIEAQERERKRMQDFIGRMGAKAS-KASQAADRKGKLEKLAIKQAA 1271
                  55667788999999999999999*******999998.677777888888888887654 PP

  == domain 3  score: 1.5 bits;  conditional E-value: 0.25
                  SSEEEEE.E-TTSSHHHHHHHHHH CS
  ABC_ATPase  244 kGvtlIv.GggfhGKsTLLeAlek 266 
                  kG+ lI  G++  GKsT+L+Al+ 
  KOO22245.1 1324 KGMRLILrGPNGAGKSTILKALSG 1347
                  676666449999*********986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1545 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       641  (0.0357521); expected 358.6 (0.02)
Passed bias filter:                      531  (0.0296168); expected 358.6 (0.02)
Passed Vit filter:                       107  (0.00596798); expected 17.9 (0.001)
Passed Fwd filter:                        43  (0.00239835); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              43  [number of targets reported over threshold]
# CPU time: 1.05u 0.32s 00:00:01.37 Elapsed: 00:00:00.45
# Mc/sec: 10302.95
//
Query:       KOO22246.1  [L=67]
Description: hypothetical protein Ctob_003687 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (67 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       447  (0.0249317); expected 358.6 (0.02)
Passed bias filter:                      373  (0.0208043); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.25s 00:00:00.56 Elapsed: 00:00:00.37
# Mc/sec: 546.32
//
Query:       KOO22247.1  [L=214]
Description: hypothetical protein Ctob_003686 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      0.009   16.2   0.4      0.009   16.2   0.4    1.9  2  RhlB        ATP-dependent RNA helicase RhlB
  ------ inclusion threshold ------
       0.29    9.8   0.7       0.33    9.6   0.7    1.1  1  Strabismus  Strabismus protein


Domain annotation for each model (and alignments):
>> RhlB  ATP-dependent RNA helicase RhlB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.7      0.58   5.2e+03      46      46 ..      76      76 ..      49      99 .. 0.60
   2 !   16.2   0.4     1e-06     0.009      17      62 ..     163     211 ..     155     214 .] 0.75

  Alignments for each domain:
  == domain 1  score: -2.6 bits;  conditional E-value: 0.58
        RhlB 46 r 46
                r
  KOO22247.1 76 R 76
                2 PP

  == domain 2  score: 16.2 bits;  conditional E-value: 1e-06
        RhlB  17 lprtprvavegee.vedead..dsvgeifreareqreadearrgggksg 62 
                 lp   +  veg + +ed+a+  d   +++   + qreade+rr  gks 
  KOO22247.1 163 LPYVDQGWVEGGDaAEDDAEsvDFFANLLSGGKLQREADERRRNQGKSK 211
                 666677778875505555432366789999*****************96 PP

>> Strabismus  Strabismus protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   0.7   3.7e-05      0.33     290     339 ..      45      94 ..      16     120 .. 0.77

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 3.7e-05
  Strabismus 290 vydvdgasnnekqsqsravlaaaarrrdsshneryyeeaeyerrvrkrra 339
                 +++ d  + ++k++q r       rrr+   +e+y  e+e +rrv  r a
  KOO22247.1  45 LFKEDPDAAARKEQQFREQQEILERRRNPKAREKYLRESEENRRVASREA 94 
                 444566666667888888888889**********************9987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (214 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       670  (0.0373696); expected 358.6 (0.02)
Passed bias filter:                      310  (0.0172904); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.39u 0.24s 00:00:00.63 Elapsed: 00:00:00.38
# Mc/sec: 1708.68
//
Query:       KOO22248.1  [L=438]
Description: actin superfamily [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
     3e-121  404.8   0.0   3.4e-121  404.7   0.0    1.0  1  Actin     Actin
    1.4e-05   24.1   0.1    0.00069   18.5   0.0    2.2  2  MreB_Mbl  MreB/Mbl protein
  ------ inclusion threshold ------
       0.15   12.5   0.5        4.6    7.7   0.1    2.5  2  FtsA      Cell division protein FtsA
        8.7    6.1   6.0        4.2    7.1   3.2    1.7  2  FTCD_C    Formiminotransferase-cyclodeaminase


Domain annotation for each model (and alignments):
>> Actin  Actin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  404.7   0.0  7.7e-125  3.4e-121       1     406 [.       4     437 ..       4     438 .] 0.95

  Alignments for each domain:
  == domain 1  score: 404.7 bits;  conditional E-value: 7.7e-125
       Actin   1 gdevsavVlDnGssttraGyagedaPkavipslvgkprgrkvea..klyvgdealt.krpelevrspvedGvvedwdaveelwehvlkeelkvdpeehp 96 
                 gdevsa+V+D Gs +t+ G+aged+Pk v+ps vg   g++  a  ++ vg++al  +++++ ++sp++dG+v+dwda e+++eh++k+ l   p+ehp
  KOO22248.1   4 GDEVSAIVIDIGSTCTKSGFAGEDCPKFVVPSSVGILGGEEAGAkaEYRVGTNALChRVDGMRISSPLSDGIVQDWDACEAILEHTFKSCLACVPSEHP 102
                 599********************************655554433449******77648***************************************** PP

       Actin  97 llltepplnppkqrekalEivfEkfkvpalylaksavlsafasgkstglvvDsGasvtsvvpVldGyvLkkairrsdlgGkaLteqlkellss..knve 193
                 +l+tep+ n++++rek++E++fEkf+vpa +l+k+avl+afasg+ t+lv+D+G +  s+++V+dGy+L++++rr +++G+a+te +++ ++    +  
  KOO22248.1 103 VLFTEPSHNTAAAREKLCELAFEKFDVPAAFLSKNAVLAAFASGRGTALVLDVGGGIISATAVHDGYALTRSVRRHNFAGDAITELVARSVQLrtPPQP 201
                 ***************************************************************************************998766447899 PP

       Actin 194 vtprylikkkkvveaessaekeelekltesyktleeeevleeiKesvcevsedpegdeeksssspeksYeLPDgseiklgeeRfkvpEiLFdpsligse 292
                 + p y++k+ +v   e+ ++  +++ ++ +++ ++  ++ +++Kes c+++  +  + +++ +s + + eLPD s +++  eR  vpE+LF+psl+ s 
  KOO22248.1 202 LLPLYSLKRSEVGPGEFMYSPIDAPGTHPAFHRYHLLQLFRDVKESACRCAMIAP-TPAVPLDSSKWDVELPDHSLLDVAWERMHVPEVLFEPSLLRSS 299
                 **************************************************99888.7788889999999***************************998 PP

       Actin 293 saleee.....................kskllgiselivaainacdvdlrpeLlanivvtGGnsllpglteRlekelaqlask.gvkvkiiapee..er 367
                   +  +                     ++ ++ +++l+ ++i  cd+d+r+eL  +i+v+GG sl+pglteRl+  l++l+++ ++kvkiiap++  er
  KOO22248.1 300 LPPCLQpgggadaaaiaagaaelqgmvPDGYMALPDLVAETIRSCDTDVRRELWGSIIVSGGCSLTPGLTERLHGRLNELVPQiSMKVKIIAPQTpqER 398
                 77555599***********************************************************************9876477************* PP

       Actin 368 kysaWiGGSiLAslgtfqqlwvskqEYeEqGssvverkc 406
                 ++++WiGGSiLAslg+fqqlw+skqEY+E+G+s++++kc
  KOO22248.1 399 RFAVWIGGSILASLGSFQQLWMSKQEYDEHGASAIHKKC 437
                 *************************************** PP

>> MreB_Mbl  MreB/Mbl protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.5   0.0   1.5e-07   0.00069      54     184 ..      62     189 ..       8     196 .. 0.78
   2 !    3.5   0.0    0.0058        26     252     297 ..     332     376 ..     314     391 .. 0.79

  Alignments for each domain:
  == domain 1  score: 18.5 bits;  conditional E-value: 1.5e-07
                 GTTEEEE-SEETTEESSHHHHHHHHHHHHHHHHTSS-SS--EEEEEE-SS--HHHHHHHHHHH.HHTT-SEEEEEEHHHHHHHHTT--TTSSS-EEEEE CS
    MreB_Mbl  54 pgnikavrPlkdGviadlevaeellkyfikkvkkkkslskprvvicvPsgiteverrAvkeaa.kkaGarevllieeplaAAiGaglpveepsgnmvvd 151
                  + +++  Pl+dG+++d ++ e++l++ +k +      s+  v+ + Ps+ t+  r+ + e a +k      +l +++++AA  +g         +v+d
  KOO22248.1  62 VDGMRISSPLSDGIVQDWDACEAILEHTFKSCLAC-VPSEHPVLFTEPSHNTAAAREKLCELAfEKFDVPAAFLSKNAVLAAFASGR-----GTALVLD 154
                 4668999**********************999875.66778899************9999876377899999***********9985.....4679*** PP

                 E-SS-EEEEEEETTEEEEEEEES...-SHHHHHHHH CS
    MreB_Mbl 152 iGggttevavislggivtsksvr...vaGdeldeai 184
                 +Ggg  + + +   g   ++svr    aGd++ e +
  KOO22248.1 155 VGGGIISATAVH-DGYALTRSVRrhnFAGDAITELV 189
                 ****87655554.44455555553336888777765 PP

  == domain 2  score: 3.5 bits;  conditional E-value: 0.0058
                 HHHHHHHHHHHTS-HHHHHHHHHH-EEEESGGGGSBTHHHHHHHHH CS
    MreB_Mbl 252 aiveavkevLektppeLaadivdrgivltGGgallkgldkllseet 297
                 a+ + v+e+++++  +   ++   +i+++GG++l  gl + l+ ++
  KOO22248.1 332 ALPDLVAETIRSCDTDVRRELWG-SIIVSGGCSLTPGLTERLHGRL 376
                 55677888888888888888775.69999**********9997655 PP

>> FtsA  Cell division protein FtsA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.4   0.1     0.045     2e+02       1      20 [.      10      29 ..      10      54 .. 0.76
   2 ?    7.7   0.1     0.001       4.6       2      42 ..     152     194 ..     151     198 .. 0.83

  Alignments for each domain:
  == domain 1  score: 2.4 bits;  conditional E-value: 0.045
                EEEEE-SSSEEEEEEETTEE CS
                xxxxxxxxxxxxxxxxxxxx RF
        FtsA  1 alvDiGagktdvavaedgal 20
                +++DiG+++t+   a ++ +
  KOO22248.1 10 IVIDIGSTCTKSGFAGEDCP 29
                69********9877766555 PP

  == domain 2  score: 7.7 bits;  conditional E-value: 0.001
                 EEEE-SSSEEEEEEETTEEEE..EEEES--HHHHHHHHHHHHT CS
                 xxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxx RF
        FtsA   2 lvDiGagktdvavaedgalvh..lrvigvggngitkdiakalr 42 
                 ++D+G+g ++++ ++dg      +r  +++g+ it+ +a++++
  KOO22248.1 152 VLDVGGGIISATAVHDGYALTrsVRRHNFAGDAITELVARSVQ 194
                 89**************9744345888888******99998876 PP

>> FTCD_C  Formiminotransferase-cyclodeaminase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.0       0.6   2.7e+03      17      37 ..     156     176 ..     154     190 .. 0.85
   2 ?    7.1   3.2   0.00094       4.2      15      36 ..     305     326 ..     302     329 .. 0.94

  Alignments for each domain:
  == domain 1  score: -2.0 bits;  conditional E-value: 0.6
                 -HHHHHHHHHHHHHHHHHHHH CS
      FTCD_C  17 GGGsvaAlvgalgaaLgsmva 37 
                 GGG ++A +   g aL+  v 
  KOO22248.1 156 GGGIISATAVHDGYALTRSVR 176
                 99******9999999998775 PP

  == domain 2  score: 7.1 bits;  conditional E-value: 0.00094
                 SS-HHHHHHHHHHHHHHHHHHH CS
      FTCD_C  15 aPGGGsvaAlvgalgaaLgsmv 36 
                 +PGGG+ aA+++a +a L  mv
  KOO22248.1 305 QPGGGADAAAIAAGAAELQGMV 326
                 6********************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (438 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       255  (0.0142228); expected 358.6 (0.02)
Passed bias filter:                      231  (0.0128842); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.46u 0.25s 00:00:00.71 Elapsed: 00:00:00.41
# Mc/sec: 3240.31
//
Query:       KOO22249.1  [L=494]
Description: growth hormone-regulated tbc protein 1-like protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.7e-37  128.5   0.0    3.6e-37  128.1   0.0    1.2  1  RabGAP-TBC  Rab-GTPase-TBC domain
  ------ inclusion threshold ------
      0.049   13.2   1.0      0.091   12.3   0.6    1.7  1  FAM47       FAM47 family


Domain annotation for each model (and alignments):
>> RabGAP-TBC  Rab-GTPase-TBC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  128.1   0.0     4e-41   3.6e-37       2     215 .]      56     254 ..      55     254 .. 0.88

  Alignments for each domain:
  == domain 1  score: 128.1 bits;  conditional E-value: 4e-41
  RabGAP-TBC   2 elRgevWklllgyepevkrlkksekkqeksekeksklekseeskelsqIkkDvprtfpesesfknkqgqnqLeriLkaysiynpevgYcqGmndivapl 100
                 +lR++vW+ ++g+     + ++ +++q         +++ +  +++ qI++D+pr+        ++ +qn L+r+L+a++  +p +gY+qG n+i+a l
  KOO22249.1  56 ALRSRVWMAFSGAAA---EVQPGMYEQLLAG-----KNSTRRTTNETQIELDIPRSGI-----LDEATQNRLRRVLRAFAAFRPSCGYVQGQNFIAAGL 141
                 69***********65...3333333333333.....33334344469*********88.....8999******************************** PP

  RabGAP-TBC 101 llvsldeeeaFwcfvsLlekyklrdlytsslpglkrklkvleellkkkdpklykhlkeegldlelfaikwfltlflrefpletvlrlwD.lllegekfv 198
                 l  ++ ee+aFw+++ ++ + +l+d +t+ + g   +++vl ell k++p+++ +l  +++  +l +++wfl l ++++p+ t+lr++D l++ g+++ 
  KOO22249.1 142 L-RVMHEEDAFWLLAIIV-EAYLPDHFTQHMIGSLVDSQVLAELLAKRMPDVAAKLAALEVPVQLLVMRWFLSLWANVLPVPTLLRVYDlLFVLGPHV- 237
                 *.7778999*********.899***********99999***************************************************888899988. PP

  RabGAP-TBC 199 llrvalailklleeell 215
                 +  v+la ++  ++ +l
  KOO22249.1 238 MPLVGLACFHVMRPTIL 254
                 999****9999888775 PP

>> FAM47  FAM47 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.6     1e-05     0.091     118     173 ..     437     492 ..     387     494 .] 0.80

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 1e-05
       FAM47 118 dqltaecslamspnlgedmppdllrqvlkpldperkledagacedqekatkeptep 173
                 ++  a+ + a ++ ++e m p l+ + +  +  er le   + ed++ka++e + p
  KOO22249.1 437 AKQFADEAAAEERRVREAMQPRLFGRGIDLMALERALERGRSQEDHKKAADEAASP 492
                 3445666789999***************************************9998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (494 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1149  (0.0640861); expected 358.6 (0.02)
Passed bias filter:                      497  (0.0277205); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.56u 0.26s 00:00:00.82 Elapsed: 00:00:00.41
# Mc/sec: 3581.10
//
Query:       KOO22250.1  [L=339]
Description: ph domain containing protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
      3e-06   27.4   0.0     0.0018   18.4   0.0    2.5  2  Peptidase_C92  Permuted papain-like amidase enzyme, YaeF/YiiX


Domain annotation for each model (and alignments):
>> Peptidase_C92  Permuted papain-like amidase enzyme, YaeF/YiiX, C92 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.4   0.0     1e-07    0.0018       2      47 ..      29      74 ..      28     131 .. 0.88
   2 !    6.5   0.0   0.00044       7.9     106     129 ..     167     189 ..     159     209 .. 0.81

  Alignments for each domain:
  == domain 1  score: 18.4 bits;  conditional E-value: 1e-07
  Peptidase_C92  2 lekGdiifqtsraslseainpatasefkHvgivvgeegderlvvea 47
                   +++Gd+i+++ ++   + i+  ta++++Hvgi+v+ + ++ + ve 
     KOO22250.1 29 VKTGDLILTSNKDLGAKIIQFFTATDWNHVGIIVKPSPNKAYLVEW 74
                   799*********999999999999***********99998999886 PP

  == domain 2  score: 6.5 bits;  conditional E-value: 0.00044
  Peptidase_C92 106 drlYCsklVakaykealgikvktv 129
                    d l+Csk Va ay +a+g+  +++
     KOO22250.1 167 DVLFCSKTVAVAY-KAAGLLAPSR 189
                    668**********.7777766555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (339 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       631  (0.0351944); expected 358.6 (0.02)
Passed bias filter:                      509  (0.0283898); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.22s 00:00:00.68 Elapsed: 00:00:00.37
# Mc/sec: 2712.73
//
Query:       KOO22251.1  [L=258]
Description: triose-phosphate isomerase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    5.2e-65  219.2   0.0      6e-65  219.0   0.0    1.0  1  TIM             Triosephosphate isomerase
  ------ inclusion threshold ------
      0.014   15.8   0.0      0.024   15.0   0.0    1.3  1  Arm-DNA-bind_3  Arm DNA-binding domain


Domain annotation for each model (and alignments):
>> TIM  Triosephosphate isomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  219.0   0.0   6.6e-69     6e-65       2     243 .]       6     249 ..       5     249 .. 0.95

  Alignments for each domain:
  == domain 1  score: 219.0 bits;  conditional E-value: 6.6e-69
                 EEEEE-TBTS.-HHHHHHHHHHHHHHCHGCTSEEEEE--GGGHHHHHHHHTTSSECEEES--BSSSSBS-TT--BHHHHHHTT-SEEEES-HHHHHHST CS
         TIM   2 liagNwKmnk.tleeakellkklkaklkeekvevviappflylekvkklleesklklgaqnvsaeksGafTGevsaemlkdlgvkyviiGHsErrqlfk 99 
                 +++gNwK+n  + ++   l+++++a  ++ +++v ++p+ l++  v ++++ + + +  qn++++  GafTGe++a+++ d+g+k+ +iGHsErr  f+
  KOO22251.1   6 IVGGNWKCNPvEVSKLDGLVANINACDTT-DCDVYVCPSNLHVGIVYTKFK-EGVWCTPQNCNFKGCGAFTGEMAADQMVDMGLKWCLIGHSERRGEFG 102
                 89*******86889999999999988887.9******************97.8999******************************************9 PP

                 .....--HHHHHHHHHHHHHTT-EEEEEE---HHHHHTT.H..HHHHHHHHHHHTTTS-CCCGGCEEEEE--GGGSSSS----HHHHHHHHHHHHHHHH CS
         TIM 100 .....EtdelvakKvkaalksglkpilCvGEtleereagkt..eevvkeqlkeilkkldeealknvviAYePvWAiGtgktatpeqaqevhaairkela 191
                      E+++l+a+K + + ++g+k ++ +GE l+ re+g +   e++++qlk +l  +d+e   ++viAYePvW+iGtg ta+peqaqe+haa+rk++a
  KOO22251.1 103 lptppESSALLAAKCEYLYSKGMKCVYAIGEPLSIREKGIEavLEYCVQQLKPFLPLMDAE---KLVIAYEPVWSIGTGVTASPEQAQETHAALRKWIA 198
                 99999*****************************999986522689999999999999988...9********************************** PP

                 HHSTHHHHTTSEEEEESS--TTTHHHHHTSTT--EEEESGGGCSHHHHHHHH CS
         TIM 192 ekvskevaekirilYGGsvnkenakellkqkdidGlLvGgaslkaesFlkii 243
                 e+ +  +ae+iri+YGGs +++na +l +++d+dG+LvGgaslk+e F++i+
  KOO22251.1 199 ENKDPATAEAIRIQYGGSATAANAPQLSACPDVDGFLVGGASLKSE-FAEIV 249
                 ********************************************76.*9996 PP

>> Arm-DNA-bind_3  Arm DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.0   0.0   2.6e-06     0.024      37      70 ..     169     206 ..     140     209 .. 0.81

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 2.6e-06
  Arm-DNA-bind_3  37 yr....lGrypavslaeARkkarelraliaqGiDPaee 70 
                     y+    +G+  + s+++A++  ++lr++ia+ +DPa +
      KOO22251.1 169 YEpvwsIGTGVTASPEQAQETHAALRKWIAENKDPATA 206
                     4465556774345**********************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (258 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       514  (0.0286686); expected 358.6 (0.02)
Passed bias filter:                      412  (0.0229795); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.42u 0.22s 00:00:00.64 Elapsed: 00:00:00.37
# Mc/sec: 2071.49
//
Query:       KOO22252.1  [L=327]
Description: protein binding [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (327 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       340  (0.0189637); expected 358.6 (0.02)
Passed bias filter:                      321  (0.017904); expected 358.6 (0.02)
Passed Vit filter:                         9  (0.00050198); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.42u 0.23s 00:00:00.65 Elapsed: 00:00:00.38
# Mc/sec: 2601.13
//
Query:       KOO22253.1  [L=962]
Description: protein kinase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    3.5e-32  111.8   0.0    1.3e-28  100.1   0.0    2.4  2  Pkinase      Protein kinase domain
    2.4e-15   56.5   0.0    4.5e-15   55.7   0.0    1.3  1  Pkinase_Tyr  Protein tyrosine kinase
     0.0042   16.5   2.1      0.037   13.4   2.1    2.6  1  Kdo          Lipopolysaccharide kinase (Kdo/WaaP) family
  ------ inclusion threshold ------
      0.077   11.8   0.0       0.12   11.1   0.0    1.2  1  YukC         WXG100 protein secretion system (Wss), protein Y
       0.11   11.8   0.1        1.3    8.3   0.0    2.2  2  Kinase-like  Kinase-like


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  100.1   0.0   3.5e-32   1.3e-28      14     191 ..     714     892 ..     711     900 .. 0.89
   2 !    9.7   0.0   0.00014      0.49     234     264 .]     900     930 ..     889     930 .. 0.89

  Alignments for each domain:
  == domain 1  score: 100.1 bits;  conditional E-value: 3.5e-32
                 EEEEEEETTTTEEEEEEEEECHCHCHHHHHHHHHHHHHHHHHSCTTB--EEEEEEESSEEEEEEE--TTEBHHHHHHHHSS--HHHHHHHHHHHHHHHH CS
     Pkinase  14 kVykaveketgkivAvKkikkekakkkkekkvlrEikilkklkhpnivrlyevfeekdelylvleyveggeladllerkgslseeeakkiakqilegle 112
                 +Vy+a+   +++ vA+K+ +++ ++     +  +E  +l++l+hp iv++  +f  +++lyl + +   g+l ++ + +++ +++ +  +++ +le+l+
  KOO22253.1 714 VVYQAL--LDDRRVALKEYRTDARSL---ARCYKEALVLRRLHHPGIVEIEAIFAFESNLYLQMPFYARGTLRQWAQ-QQQPDHTALATVLQLVLEALA 806
                 578888..68999*****99998776...457********************************************8.5778999999*********** PP

                 HHHHTTEE-SS-SGGGEEEETTTEEEE-SGTTSEESSSSCS.......BCTTTSCGGGS-HHHHTTSCBSHHHHHHHHHHHHHHHH CS
     Pkinase 113 ylHskgiiHrDlKpeNiLidekgelKitDFGlakelesssk.......ltsfvgtseYlAPEvlkeneyskkvDvWslGvilyell 191
                 +lH+++++H DlKpeNiLid  g   i+D++++    ++           ++vgt  ++APE+  + e s+++D++slG ++  ++
  KOO22253.1 807 HLHAHRVFHLDLKPENILIDAAGRPHIADYDISHDGATRAVarrqthmGVTRVGTDGFVAPELEAGAEASAAADLYSLGRTIEAVV 892
                 ******************************9998766655566667877899***************************8876555 PP

  == domain 2  score: 9.7 bits;  conditional E-value: 0.00014
                 -HHHHHHHHHHT-SSGCCSTTHHHHHTSGGG CS
     Pkinase 234 seeakdllkkllkkdpkkRltaeellqhpyl 264
                 s  +  l+++l ++dp  R++a+++ qh y+
  KOO22253.1 900 SAPLSALIEQLTRQDPAARPSAAHAAQHAYF 930
                 777899***********************98 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.7   0.0   1.2e-18   4.5e-15      28     230 ..     722     922 ..     704     930 .. 0.79

  Alignments for each domain:
  == domain 1  score: 55.7 bits;  conditional E-value: 1.2e-18
                  EEEEEEEEESTTSSHHHHHHHHHHHHHHHTS-BTTB--EEEEEESSSSEEEEEE--TTEBHHHHHHHTCTTTSBHHHHHHHHHHHHHHHHHHHHTTEE CS
  Pkinase_Tyr  28 evkVavKtlkeeateeekeelleeakimkklkhpnivkllgvctkeepllivteyvkgGdLlkfLrkkekekltlkdllsfalqvAkGmeyLeskklv 125
                  + +Va+K  + +a++   ++ ++ea ++++l+hp iv++ ++   e++l++ + + + G+L++  ++++ ++   + l  + + v +++++L+++++ 
   KOO22253.1 722 DRRVALKEYRTDARS--LARCYKEALVLRRLHHPGIVEIEAIFAFESNLYLQMPFYARGTLRQWAQQQQPDH---TALATVLQLVLEALAHLHAHRVF 814
                  7899***99666655..599********************************************99995555...5555555667789********** PP

                  EST-SGGGEEEEETTEEEE-STTTHEETTTSSEEEETTS.STSGG...GGS-HHHHHHSEEEHHHHHHHHHHHHHHHHTTSSGTTTTS.HHHHHHHHH CS
  Pkinase_Tyr 126 HrdlaarNvLlsenkvvkisDfGLardiekddeyvkkee.aklpv...kWmapEslkekkftsksDvWsfGvllwEiftlgespypgl.kneevlekl 218
                  H dl   N+L++      i+D+ +++d  ++   +++++ + ++v    ++apE     + + ++D +s G ++  ++   ++p+++    + ++e+l
   KOO22253.1 815 HLDLKPENILIDAAGRPHIADYDISHDGATRAVARRQTHmGVTRVgtdGFVAPELEAGAEASAAADLYSLGRTIEAVV--PDEPLRRSaPLSALIEQL 910
                  *************************99955555433332022232222699********************8764444..477777665667777888 PP

                  HTTEES-BBTTS CS
  Pkinase_Tyr 219 kegkrlekpekc 230
                  +++   ++p+ +
   KOO22253.1 911 TRQDPAARPSAA 922
                  777777777665 PP

>> Kdo  Lipopolysaccharide kinase (Kdo/WaaP) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.4   2.1     1e-05     0.037     105     160 ..     780     830 ..     724     853 .. 0.83

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 1e-05
         Kdo 105 LedllakwaelaeelkrallkavgrliaklhragvnHadlyaknillqqeeeeeae 160
                 L +++++ ++++++  ++ l+ v  + a lh+  v H dl + nil+++++    +
  KOO22253.1 780 LRQWAQQ-QQPDHTALATVLQLVLEALAHLHAHRVFHLDLKPENILIDAAG----R 830
                 7778886.77**************************************988....3 PP

>> YukC  WXG100 protein secretion system (Wss), protein YukC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   3.5e-05      0.12      63     104 ..     797     840 ..     769     845 .. 0.74

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 3.5e-05
                 HHHH.GGGGGGGGGSS.EE---SGGGEEE-TTS-EEES--EETT CS
        YukC  63 laln.ikaleellssr.ltlilhPeNlvfdknlepkilhrgvke 104
                 +++  ++al++l+ +r  +l l+PeN+++d+  +p+i+ +++ +
  KOO22253.1 797 VLQLvLEALAHLHAHRvFHLDLKPENILIDAAGRPHIADYDISH 840
                 444445666665555516***********************975 PP

>> Kinase-like  Kinase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.6   0.0     0.076   2.7e+02      50      80 ..     541     571 ..     529     590 .. 0.82
   2 ?    8.3   0.0   0.00036       1.3     137     199 ..     790     847 ..     759     885 .. 0.69

  Alignments for each domain:
  == domain 1  score: 0.6 bits;  conditional E-value: 0.076
  Kinase-like  50 easkkdlerlkeqelairllrgknpeqAkdh 80 
                   as+ ++erl++ e  ++ ++g+  + A ++
   KOO22253.1 541 AASRAEVERLRQLEVHYTSVLGEASKLAAER 571
                  5899999999999999999999877777655 PP

  == domain 2  score: 8.3 bits;  conditional E-value: 0.00036
  Kinase-like 137 thkkletiarlllTlqlirlaanLqakglvhgkftvdnllldekgglmlggftaLvragtkvv 199
                   h  l+t+ +l+l        a+L+a+ ++h +++++n+l d  g+  + + +      t++v
   KOO22253.1 790 DHTALATVLQLVL-----EALAHLHAHRVFHLDLKPENILIDAAGRPHIADYDISHDGATRAV 847
                  3444444433333.....5589***********************999888764444444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (962 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       637  (0.035529); expected 358.6 (0.02)
Passed bias filter:                      435  (0.0242624); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.72u 0.27s 00:00:00.99 Elapsed: 00:00:00.43
# Mc/sec: 6742.95
//
Query:       KOO22254.1  [L=258]
Description: hypothetical protein Ctob_004763 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (258 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       688  (0.0383736); expected 358.6 (0.02)
Passed bias filter:                      498  (0.0277762); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.45u 0.25s 00:00:00.70 Elapsed: 00:00:00.41
# Mc/sec: 1892.17
//
Query:       KOO22255.1  [L=396]
Description: calcium proton exchanger [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      3e-29  101.9  39.0    2.7e-15   56.6  16.3    2.2  2  Na_Ca_ex  Sodium/calcium exchanger protein
  ------ inclusion threshold ------
       0.61    9.6   0.0       0.61    9.6   0.0    2.6  3  DUF5527   Family of unknown function (DUF5527)


Domain annotation for each model (and alignments):
>> Na_Ca_ex  Sodium/calcium exchanger protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.3  14.7   1.3e-17   1.2e-13       3     147 ..      48     199 ..      46     202 .. 0.79
   2 !   56.6  16.3     3e-19   2.7e-15       2     145 ..     234     372 ..     233     378 .. 0.90

  Alignments for each domain:
  == domain 1  score: 51.3 bits;  conditional E-value: 1.3e-17
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHTHHHHHHHHHHBTTSSCECCH CS
    Na_Ca_ex   3 fvlfilslllisvladflvssaeeiakslgisgsvlGltllAlgnslpElissiiaaltgevdlaignvlGsnifnlllviGlialigslkvdseslkl 101
                 +++f l+ ++i +la++l +++e++a  l+ s+ ++G +l+A++++++E+i+ ++ ++ g+ +++  ++lGs++ n llv+G+++l ++ ++++  +  
  KOO22255.1  48 AIIFSLCCFAILPLAALLGDATEQTA--LHTSQ-TIGGLLNATFGNATEMIICFFLLKAGQLEVVKLSLLGSILSNALLVLGFACLASGSVKRNVAYGS 143
                 57899999******************..68888.67777************************************************994444444333 PP

                 HHHHHHHHHHHHHHHHHHTCHHHHH............HTEEHHHHHHHHHHHHHHHHH CS
    Na_Ca_ex 102 dlgllllvallllllvlllllplfv............pgrltvleglvllllYalylv 147
                 +  ++  +++l ++ v+ ++lp+ +            +  ++++ ++++l+lYal+l 
  KOO22255.1 144 TT-ATANTTMLQVS-VIGVILPTLMtatgqfeshgneSLSISRFISVIFLFLYALFLM 199
                 33.33333333322.22223333334457899************************97 PP

  == domain 2  score: 56.6 bits;  conditional E-value: 3e-19
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHTHHHHHHHHHHBTTSSCECC CS
    Na_Ca_ex   2 lfvlfilslllisvladflvssaeeiakslgisgsvlGltllAlgnslpElissiiaaltgevdlaignvlGsnifnlllviGlialigslkvdseslk 100
                 ++++++ ++l+++ l+++l+ ++e  a+ +g++++++G +++++ +++ E+ +++++a + ++dla++ + Gs +++ l+v+++++l+g+l  ++  l+
  KOO22255.1 234 SILWLLGATLVLAYLSELLSGAVEGAAEGMGLTPAFVGFVIIPIIGNAAEHSTAVVMAFRLKMDLALAVAQGSSTQIALFVVPVMVLLGWLIGQP--LD 330
                 578999**********************************************************************************9977776..68 PP

                 HHHHHHHHHHHHHHHHHHHTCHHHHHHTEEHHHHHHHHHHHHHHH CS
    Na_Ca_ex 101 ldlgllllvallllllvlllllplfvpgrltvleglvllllYaly 145
                 ld+gl +  a+ +l++v++  +++  +g  ++leg++l+++Y+++
  KOO22255.1 331 LDFGL-FESAITFLSTVIVASVIN--DGSTNWLEGAMLISTYIII 372
                 99955.666666667777777777..5***************986 PP

>> DUF5527  Family of unknown function (DUF5527)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.5      0.22   1.9e+03      27      56 ..      34      63 ..      23      66 .. 0.70
   2 ?   -0.9   0.1      0.12   1.1e+03      47      62 ..      95     110 ..      68     113 .. 0.80
   3 ?    9.6   0.0   6.8e-05      0.61       2      72 ..     143     211 ..     142     232 .. 0.82

  Alignments for each domain:
  == domain 1  score: -1.7 bits;  conditional E-value: 0.22
     DUF5527 27 vPlspaslaekadplpiiialvCifll.lat 56
                vP++ +s+ e  ++  ii  l C  +l la+
  KOO22255.1 34 VPIALVSE-EFFESEAIIFSLCCFAILpLAA 63
                66666666.7888888999998876552554 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 0.12
     DUF5527  47 lvCiflllatflifvt 62 
                 ++C fll a  l  v 
  KOO22255.1  95 IICFFLLKAGQLEVVK 110
                 6899999888776665 PP

  == domain 3  score: 9.6 bits;  conditional E-value: 6.8e-05
     DUF5527   2 stedasnetsptlsllallvsttelvPlspaslaekadplpiiialvCiflllatflifvtlCkPaaldqs 72 
                 st  ++n+t  ++s+++++     l+ ++ + +++  ++l+i   +  ifl+l +++++ tlC   al + 
  KOO22255.1 143 STTATANTTMLQVSVIGVIL--PTLMTATGQFESHGNESLSISRFISVIFLFLYALFLMNTLCPCPALKPG 211
                 67777888888888777776..5678888888888999*************************98888765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (396 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       763  (0.0425568); expected 358.6 (0.02)
Passed bias filter:                      314  (0.0175135); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.46u 0.27s 00:00:00.73 Elapsed: 00:00:00.42
# Mc/sec: 2844.10
//
Query:       KOO22256.1  [L=523]
Description: phytoene dehydrogenase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.4e-18   67.4   1.0      3e-08   33.4   0.2    3.4  3  Amino_oxidase  Flavin containing amine oxidoreductase
    6.7e-11   42.3   1.7    8.4e-11   41.9   0.1    2.0  2  NAD_binding_8  NAD(P)-binding Rossmann-like domain
    1.6e-05   24.2   0.3      0.015   14.4   0.2    2.4  2  FAD_binding_2  FAD binding domain
     0.0017   18.0   0.3       0.35   10.4   0.1    2.4  2  DAO            FAD dependent oxidoreductase


Domain annotation for each model (and alignments):
>> Amino_oxidase  Flavin containing amine oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.4   0.2   6.8e-12     3e-08       1      49 [.       1      49 [.       1     117 [. 0.93
   2 !   16.3   0.0     1e-06    0.0047     156     261 ..     151     257 ..     140     263 .. 0.87
   3 !   14.3   0.0   4.1e-06     0.018     415     451 ..     464     501 ..     435     502 .. 0.72

  Alignments for each domain:
  == domain 1  score: 33.4 bits;  conditional E-value: 6.8e-12
                   HHHHHHHHHHHHTTEEEEEEESSSSSBTTS-EEEETTEEEESS--EEET CS
  Amino_oxidase  1 laGLaaArqLlsaGfdVtvlEardrvGGRirtvrsdGylielGamwftg 49
                   + GL+aA  L+ +G++V+vlE  d +GG  +t++  G+ +++G + + +
     KOO22256.1  1 MGGLTAAALLAKRGQRVLVLEQHDVAGGCTHTFEERGFEFDTGLHYVGD 49
                   78******************************************99866 PP

  == domain 2  score: 16.3 bits;  conditional E-value: 1e-06
                    HHHHHHHHHHHHHHHHHHHCHTSTTTTCBHHHHTCCCCHHHHHTSCCCEETTHTHHHHHHHHH..TTTTEEEETSEEEEEEEE.ETTCEEEEETTS CS
  Amino_oxidase 156 vwdrliepelfaklefasglfagdpselsaklalpllwelegfggslllprgGlsqlpealae..elrgldirlntrVkeikr.egdgvtvtledg 248
                    + +   +p+l + l++  g+++  p   s +    +l  l+ ++ + ++p gG sql+ +l    e+ g+ ++++++V+++   e++g  + +   
     KOO22256.1 151 LASLTNDPKLQQLLGYIWGTYGVPP---SRSPYALHLVLLNHYANGGYYPVGGCSQLAARLVPtiEAAGGAVLVRAKVSSLVCdEASGAVLGVIVR 243
                    556677899999999999***9988...8888888999999999999999*********************************9899977777777 PP

                    TEE.EESEEEE-S- CS
  Amino_oxidase 249 evv.eaDaVvvTvp 261
                    +++ +a +V+++v 
     KOO22256.1 244 DQTlTATRVISAVG 257
                    7666*******996 PP

  == domain 3  score: 14.3 bits;  conditional E-value: 4.1e-06
                    CH....HCSTTEEE.SGGGCTTTTTSHHHHHHHHHHHHHHH CS
  Amino_oxidase 415 kp....egdprlffAGehtsreypgtvegAilSGlraAari 451
                    +      ++p+l+++G  ++   +++v gA+lSGl +A +i
     KOO22256.1 464 EWltpqTPLPNLYLTGQDIA---TDGVTGAVLSGLLTAGAI 501
                    22335567************...888************987 PP

>> NAD_binding_8  NAD(P)-binding Rossmann-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.9   0.1   1.9e-14   8.4e-11       6      52 ..       1      47 [.       1      56 [. 0.96
   2 ?   -2.6   0.1       1.5   6.6e+03       3      17 ..     489     503 ..     487     505 .. 0.79

  Alignments for each domain:
  == domain 1  score: 41.9 bits;  conditional E-value: 1.9e-14
                   HHHHHHHHHHHCCTEEEEEE-SSSSSSGGG-EECETTCEECTS---E CS
  NAD_binding_8  6 lsGlvaAylLakagfdvlllekrdrlGGraasyevpgvrvdygahif 52
                   ++Gl+aA+lLak+g +vl+le++d  GG+ +++e  g+ +d+g h++
     KOO22256.1  1 MGGLTAAALLAKRGQRVLVLEQHDVAGGCTHTFEERGFEFDTGLHYV 47
                   79*******************************************96 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 1.5
                    --SHHHHHHHHHHHC CS
  NAD_binding_8   3 GaGlsGlvaAylLak 17 
                    Ga lsGl++A ++ k
     KOO22256.1 489 GAVLSGLLTAGAIDK 503
                    8889****9977765 PP

>> FAD_binding_2  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.4   0.2   3.4e-06     0.015      10      39 ..       2      31 ..       1      34 [. 0.93
   2 !    7.5   0.0   0.00041       1.9     139     204 ..     200     261 ..     134     276 .. 0.85

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 3.4e-06
                   HHHHHHHHHHHTTT-EEEEESSSGGGSGGG CS
  FAD_binding_2 10 AGLaAAleaaeaGlkvavvekeqefggata 39
                   +GL+AA+ +a++G++v+v+e+ ++ gg t+
     KOO22256.1  2 GGLTAAALLAKRGQRVLVLEQHDVAGGCTH 31
                   8**************************876 PP

  == domain 2  score: 7.5 bits;  conditional E-value: 0.00041
                    HHHHHHHHHHHHHHTCTEEEEESEEEEEEEECTT..EEEEEEEEETTTTCEEEEEESEEEE-----GG CS
  FAD_binding_2 139 tghallarlvesarkagvdfqerteadeLivedg..rvtGavvenpesgrevrirakavvlatgGfgr 204
                       +l+arlv ++++ag  ++ r+++ +L+ ++    v G++v+      +++++a++v+ a g+++ 
     KOO22256.1 200 GCSQLAARLVPTIEAAGGAVLVRAKVSSLVCDEAsgAVLGVIVR------DQTLTATRVISAVGAINT 261
                    567899***********************996334488888887......777888888888888874 PP

>> DAO  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.4   0.1   7.7e-05      0.35      11      38 ..       3      31 ..       1      33 [. 0.90
   2 !    5.5   0.0    0.0024        11     130     205 ..     189     261 ..      91     295 .. 0.71

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 7.7e-05
                HHHHHHHHHHTT..EEEEESSSSTTSSGGG CS
         DAO 11 GlstAyeLarrg..VtllekgdiagsgaSg 38
                Gl++A  La+rg  V++le++d ag g+++
  KOO22256.1  3 GLTAAALLAKRGqrVLVLEQHDVAG-GCTH 31
                999********9*********8887.9986 PP

  == domain 2  score: 5.5 bits;  conditional E-value: 0.0024
                 TTSEEEEETTEEEEEHHHHHHHHHHHHHHTT-EEEESECEEEE..EEEETCEEEEE.EECTEEEEEEEEEEE--GGGHH CS
         DAO 130 gllgalfypdtgqvdpakltaalaraaealGveilegtevtgl..eeedgkvwgve.rttpgendaadavVnaaGawsd 205
                 +++ + +yp +g+    +l+a l  ++ea+G+ +l +++v +l  +e +g v gv  r  +    +a+ v+ a Ga  +
  KOO22256.1 189 HYANGGYYPVGGC---SQLAARLVPTIEAAGGAVLVRAKVSSLvcDEASGAVLGVIvR-DQTL--TATRVISAVGAINT 261
                 5667778888877...8999999999****************8554455888888542.1122..3588*****98644 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (523 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       402  (0.0224218); expected 358.6 (0.02)
Passed bias filter:                      339  (0.0189079); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.55u 0.26s 00:00:00.81 Elapsed: 00:00:00.42
# Mc/sec: 3718.86
//
Query:       KOO22257.1  [L=1267]
Description: hypothetical protein Ctob_004767 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.7e-07   30.1   1.3      0.084   13.0   0.0    5.4  5  LRR_6     Leucine Rich repeat
    0.00079   19.4   0.1     0.0016   18.4   0.1    1.5  1  NACHT     NACHT domain
     0.0051   17.1   0.0      0.013   15.8   0.0    1.7  1  AAA_19    AAA domain
  ------ inclusion threshold ------
      0.013   15.9   0.1       0.05   14.0   0.1    2.0  1  AAA_16    AAA ATPase domain


Domain annotation for each model (and alignments):
>> LRR_6  Leucine Rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.9   0.1    0.0016       7.2       2      24 .]    1036    1058 ..    1035    1058 .. 0.94
   2 ?   -2.6   0.0       1.8     8e+03      10      22 ..    1072    1085 ..    1071    1086 .. 0.83
   3 ?    2.3   0.0      0.05   2.2e+02       5      24 .]    1152    1171 ..    1150    1171 .. 0.90
   4 !   13.0   0.0   1.9e-05     0.084       6      24 .]    1181    1199 ..    1177    1199 .. 0.93
   5 ?    1.3   0.0       0.1   4.5e+02      13      23 ..    1216    1226 ..    1216    1226 .. 0.90

  Alignments for each domain:
  == domain 1  score: 6.9 bits;  conditional E-value: 0.0016
       LRR_6    2 nthLteLdLsgNdIgDeGaeaLa 24  
                  n+++ + dL gN++++ G+  La
  KOO22257.1 1036 NRTVVSIDLHGNELDNNGVAELA 1058
                  99*****************9987 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 1.8
       LRR_6   10 LsgNd.IgDeGaea 22  
                  LsgN+ I+ +G+ a
  KOO22257.1 1072 LSGNErIDVKGINA 1085
                  9****999999765 PP

  == domain 3  score: 2.3 bits;  conditional E-value: 0.05
       LRR_6    5 LteLdLsgNdIgDeGaeaLa 24  
                  L eL L  N +  eG+  +a
  KOO22257.1 1152 LLELGLERNPLKAEGMAYIA 1171
                  889************98776 PP

  == domain 4  score: 13.0 bits;  conditional E-value: 1.9e-05
       LRR_6    6 teLdLsgNdIgDeGaeaLa 24  
                  + LdL+++ I  eG++aLa
  KOO22257.1 1181 RDLDLRFCAIHAEGMKALA 1199
                  78****************8 PP

  == domain 5  score: 1.3 bits;  conditional E-value: 0.1
       LRR_6   13 NdIgDeGaeaL 23  
                  N+Ig eGa+ +
  KOO22257.1 1216 NQIGYEGAKTI 1226
                  9*******965 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.4   0.1   3.6e-07    0.0016       5     159 ..     268     421 ..     265     428 .. 0.69

  Alignments for each domain:
  == domain 1  score: 18.4 bits;  conditional E-value: 3.6e-07
                 EEC-TTTCHHHHHHHHHHHHCTS-SCCCC.....-SEEEEEETTTTTTS-......-HCHHHCCCCTS--SSS-CCHHHHCCSCCCEE.EEEE-STT-S CS
       NACHT   5 lqGeaGsGKTtLlqklalawaegklpqga.....fklvFflslrelsrsgna...rsladllfsqlpepaapvsevwavllelperlL.lilDglDelv 94 
                 ++  +G GKT+ lq+l ++ a++ + + +       ++ +ls+++l    +     s    l s +   + + ++   +l++ + r+L l +Dg+De++
  KOO22257.1 268 VRAGPGTGKTVSLQQLTRLVAKRLQSKSKtdvgiALVPMLLSVQRLASYMKRgtlNSQESDLLSAYINVEFTGQTRDLLLQAYEARALvLCIDGVDEAA 366
                 56679*****************999988866666677777787777776665565444444444444444444442334444455555599******** PP

                 S-TCH.........HHHHHCTTT.TT--EEEEEEECCCHHHHCTTSSCE..EEEE--TCCHHHHHH CS
       NACHT  95 tdlgqkekqpvrtlLselirkkl.lpeasllltvrpralrdleeqleeaivlevegfsesrrkqlv 159
                     +         +++li   l + + ++++++rp+++ +le++  + i + ++++s ++ kq v
  KOO22257.1 367 GLKAK---------IENLIVDGLnPMGIRMVASSRPEGV-RLERYG-KFITMDLAPLSDEQQKQAV 421
                 95555.........55555554414799***********.555555.4459999999999999877 PP

>> AAA_19  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.0     3e-06     0.013       7      42 ..     260     295 ..     254     360 .. 0.86

  Alignments for each domain:
  == domain 1  score: 15.8 bits;  conditional E-value: 3e-06
      AAA_19   7 alkekvllvtaGpGtGKTrvlkhivallvelggvkp 42 
                  + ++ +lv aGpGtGKT  l++  +l+ ++ + k 
  KOO22257.1 260 MHGAQGVLVRAGPGTGKTVSLQQLTRLVAKRLQSKS 295
                 6677889****************9999988877654 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.1   1.1e-05      0.05      24     147 ..     261     365 ..     242     382 .. 0.59

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 1.1e-05
      AAA_16  24 p..elvllsGesGvGKsslvrellralekdggiflrgkcdqlesaipysa.laqalareellrqlldeaesaeleawrekleealaavpelagaeasrl 119
                    + vl++  +G+GK+  +++l r + k+    l+ k +    +i++++ l+++    ++++    +  s+e +  ++ +  +              +
  KOO22257.1 261 HgaQGVLVRAGPGTGKTVSLQQLTRLVAKR----LQSKSKTD-VGIALVPmLLSVQRLASYMKRGTLN--SQESDLLSAYINVE--------------F 338
                 24499*******************988888....77777666.3344433233333111222222222..22333333333333..............4 PP

      AAA_16 120 lellkrllallsrderplvlvlDdlqwa 147
                   + ++ll ++ + +r lvl++D ++ a
  KOO22257.1 339 TGQTRDLLLQAYE-ARALVLCIDGVDEA 365
                 4444444422223.56688888888866 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1267 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       515  (0.0287244); expected 358.6 (0.02)
Passed bias filter:                      454  (0.0253221); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.80u 0.31s 00:00:01.11 Elapsed: 00:00:00.47
# Mc/sec: 8106.70
//
Query:       KOO22258.1  [L=617]
Description: map microtubule affinityregulating kinase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.9e-39  135.7   0.0    2.8e-39  135.1   0.0    1.2  1  Pkinase         Protein kinase domain
    2.8e-13   49.7   0.0    5.2e-13   48.9   0.0    1.4  1  Pkinase_Tyr     Protein tyrosine kinase
     0.0058   15.5   0.1      0.036   12.9   0.0    1.9  2  Pkinase_fungal  Fungal protein kinase
     0.0081   15.6   1.4        3.4    7.4   1.7    2.7  2  EF-hand_1       EF hand
  ------ inclusion threshold ------
      0.011   16.2   7.9      0.017   15.6   7.9    1.2  1  Fez1            Fez1
       0.29   11.6   3.2        6.8    7.2   1.9    3.1  3  EF-hand_7       EF-hand domain pair
        4.5    5.7   7.5        7.3    5.0   7.5    1.3  1  FUSC            Fusaric acid resistance protein family


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  135.1   0.0   1.1e-42   2.8e-39      17     264 .]     355     615 ..     346     615 .. 0.83

  Alignments for each domain:
  == domain 1  score: 135.1 bits;  conditional E-value: 1.1e-42
                 EEEETTTTEEEEEEEEECHCHCHHHHHHHHHHHHHHHHHS.CTTB--EEEEEEESSEEEEEEE--TTEBHHHHHHHHSS--HHHHHHHHHHHHHHHHHH CS
     Pkinase  17 kaveketgkivAvKkikkekakkkkekkvlrEikilkklk.hpnivrlyevfeekdelylvleyveggeladllerkgslseeeakkiakqilegleyl 114
                 k+++ +tg++ ++K+ kk + ++     +++E+   + l  hpni+r+ +v+e++ e +++ e+++g++l+ ++e+   ++e++ak++++qi++++++l
  KOO22258.1 355 KVTNIATGEHRVMKCYKKFDHED-----LISELCAARDLTpHPNIMRFDKVIETDAEAFVLCEFLDGEDLMAFYEQ--GVDEATAKHLFHQIFSAFAHL 446
                 67778888888888888776555.....789*******************************************85..8******************** PP

                 H.HTTEE-SS-SGGGEEEETTTE......EEE-SGTTSEESSSSCS.BCTTTSCGGGS-HHHH...TT......SCBSHHHHHHHHHHHHHHHHHSS-S CS
     Pkinase 115 H.skgiiHrDlKpeNiLidekge......lKitDFGlakelesssk.ltsfvgtseYlAPEvl...ke......neyskkvDvWslGvilyelltgkpp 196
                 H + g++H D+K eN+++  +g        Ki+DFGla+   ++ k ++  ++   Y+APE+l   ++       + +k++D++ lGv+ly ll+++ p
  KOO22258.1 447 HgQCGVLHNDVKLENLFVVGTGGttaqlqAKIIDFGLASFPGKKPKvANPGTCGFAYCAPELLnqaQKsllpvlPHATKEMDIFRLGVVLYVLLMQQFP 545
                 *8888**************5333466777***********999998788889999********76522566664555********************** PP

                 TTTSSHHHHHHHHHHTHHHHHHHCT.......SHH...HHHTTS-HHHHHHHHHHT-SSGCCSTTHHHHHTSGGG CS
     Pkinase 197 fsgekgkekvekeldqlekilkilg.......etkeklpeaseiseeakdllkkllkkdpkkRltaeellqhpyl 264
                 ++           l +  + ++ l          k++l +++ +s+e+k+ll +ll+ dpk R+ta+ +l+h ++
  KOO22258.1 546 YPPIPLAA-----LAEPSQPARPLSdesfkkeSHKVALGKWRALSPECKELLGRLLAFDPKARPTAQAALEHAWF 615
                 **444433.....2222222222222233344667888888889******************************8 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.9   0.0     2e-16   5.2e-13      40     214 ..     370     554 ..     352     612 .. 0.79

  Alignments for each domain:
  == domain 1  score: 48.9 bits;  conditional E-value: 2e-16
                  SSHHHHHHHHHHHHHHHTS.-BTTB--EEEEEESSSSEEEEEE--TTEBHHHHHHHTCTTTSBHHHHHHHHHHHHHHHHHHHHTT.EEEST-SGGGEE CS
  Pkinase_Tyr  40 ateeekeelleeakimkkl.khpnivkllgvctkeepllivteyvkgGdLlkfLrkkekekltlkdllsfalqvAkGmeyLeskk.lvHrdlaarNvL 135
                  +++ ++e+l++e+   ++l  hpni+++  v+  + + +++ e+++g dL  f ++     ++  +  ++ +q+ ++ ++L+ +  ++H d+   N +
   KOO22258.1 370 YKKFDHEDLISELCAARDLtPHPNIMRFDKVIETDAEAFVLCEFLDGEDLMAFYEQG----VDEATAKHLFHQIFSAFAHLHGQCgVLHNDVKLENLF 463
                  45556899*********************************************9998....555555566789********9775499********** PP

                  EEE......TTEEEE-STTTHEETTTSSEEEETTSSTSGGGGS-HHHHHHSE.........EEHHHHHHHHHHHHHHHHTTSSGTTTTSHHHHH CS
  Pkinase_Tyr 136 lse......nkvvkisDfGLardiekddeyvkkeeaklpvkWmapEslkekk.........ftsksDvWsfGvllwEiftlgespypglkneev 214
                  +        + ++ki DfGLa+     ++ ++++ +++ + ++apE l++ +          t++ D++  Gv+l+ ++   + pyp +  + +
   KOO22258.1 464 VVGtggttaQLQAKIIDFGLASFP--GKKPKVANPGTCGFAYCAPELLNQAQksllpvlphATKEMDIFRLGVVLYVLLM-QQFPYPPIPLAAL 554
                  98777777799***********88..56667788899999*********99999******99**************8887.7888777655553 PP

>> Pkinase_fungal  Fungal protein kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.1   0.3      0.12     3e+02     274     311 ..     210     246 ..     190     331 .. 0.66
   2 !   12.9   0.0   1.4e-05     0.036     317     387 ..     441     510 ..     430     542 .. 0.76

  Alignments for each domain:
  == domain 1  score: -0.1 bits;  conditional E-value: 0.12
  Pkinase_fungal 274 vstskrsrlenrvhrrlvispvGkpiekaespkellea 311
                     +++s++++ ++r  +  ++s+ Gk++++  s  el +a
      KOO22258.1 210 LRRSQKEE-DDRKAELAALSTEGKQLKERASNAELAKA 246
                     33444444.45555555555555555555555444333 PP

  == domain 2  score: 12.9 bits;  conditional E-value: 1.4e-05
  Pkinase_fungal 317 kghrsLflkagiLHrDiSenNilitds.kkegerkglLiDLDlakelsddssesgarertGTleFmaievlk 387
                      ++  L+ ++g+LH+D+  +N+ ++ +  ++++ +  +iD+ la+  ++  + ++a+  t   ++ a e+l+
      KOO22258.1 441 SAFAHLHGQCGVLHNDVKLENLFVVGTgGTTAQLQAKIIDFGLASFPGK--KPKVANPGTCGFAYCAPELLN 510
                     68899********************9978889999*********99985..555555555555666666666 PP

>> EF-hand_1  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.9   0.0    0.0084        22       8      26 ..      92     110 ..      91     112 .. 0.87
   2 !    7.4   1.7    0.0013       3.4       8      26 ..     132     150 ..     126     153 .. 0.88

  Alignments for each domain:
  == domain 1  score: 4.9 bits;  conditional E-value: 0.0084
                 HHTTTSSSEEEHHHHHHHH CS
   EF-hand_1   8 efDkDgdGkIdfeEfkell 26 
                  +D Dg+  +++eE  +++
  KOO22258.1  92 RMDADGNRNLSKEEVSRWF 110
                 59************98765 PP

  == domain 2  score: 7.4 bits;  conditional E-value: 0.0013
                 HHTTTSSSEEEHHHHHHHH CS
   EF-hand_1   8 efDkDgdGkIdfeEfkell 26 
                  fD DgdG  d +E+++l+
  KOO22258.1 132 RFDEDGDGGFDDDELLRLF 150
                 7**************9987 PP

>> Fez1  Fez1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.6   7.9   6.7e-06     0.017       9     107 ..     200     296 ..     196     346 .. 0.78

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 6.7e-06
        Fez1   9 sGEislLKqQLkdsqaevtqklseivalkaqlrelrakleekeeeikeleesleektlelevcenelqrkkseaellrekvekleeelkelreelsels 107
                 +G i  L + L+ sq+e   +  e+ al ++ ++l+++ ++ e +  ++e +++e+  + +++e+e + +++++ ll+ek+++++  l++ r+ ++  s
  KOO22258.1 200 TGSIESLSTDLRRSQKEEDDRKAELAALSTEGKQLKERASNAELAKAKAELEANER--KEQQVEAERRAAHEKNRLLEEKLREAQWGLESRRKGAALIS 296
                 588999999**************************998777766665555555555..556999999999999********999999998888665544 PP

>> EF-hand_7  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.2   1.9    0.0027       6.8      11      69 ..      93     149 ..      85     151 .. 0.69
   2 ?    6.2   1.3    0.0057        15      11      33 ..     133     155 ..     128     175 .. 0.83
   3 ?   -0.3   0.0       0.6   1.5e+03      18      40 ..     413     430 ..     411     458 .. 0.74

  Alignments for each domain:
  == domain 1  score: 7.2 bits;  conditional E-value: 0.0027
   EF-hand_7  11 lDtdgdgyldkeellr.llrkifqgagegsklsdeele...llfkefDtdkdGvisfdEFlkl 69 
                 +D dg+  l+kee+ r +l       + + + ++ +++   +l+  fD d+dG  + dE+l+l
  KOO22258.1  93 MDADGNRNLSKEEVSRwFLA------SLNQSDDSAAVKrwgKLLGRFDEDGDGGFDDDELLRL 149
                 79999********9985444......4444434444552236677779999998877777655 PP

  == domain 2  score: 6.2 bits;  conditional E-value: 0.0057
   EF-hand_7  11 lDtdgdgyldkeellrllrkifq 33 
                 +D dgdg  d +ellrl+  i++
  KOO22258.1 133 FDEDGDGGFDDDELLRLFDGIDE 155
                 8*************999998765 PP

  == domain 3  score: -0.3 bits;  conditional E-value: 0.6
   EF-hand_7  18 yldkeellrllrkifqgagegsk 40 
                 +ld e+l+ ++++     g ++ 
  KOO22258.1 413 FLDGEDLMAFYEQ-----GVDEA 430
                 8999**9997776.....55544 PP

>> FUSC  Fusaric acid resistance protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.0   7.5    0.0028       7.3     222     310 ..     190     280 ..     184     313 .. 0.75

  Alignments for each domain:
  == domain 1  score: 5.0 bits;  conditional E-value: 0.0028
        FUSC 222 rrllsrmlallallsslarllarlraeeaaavpelaallaelaaleaaaaaealeaalaalrarlralrrale..adadtaalllarlael 310
                 +++ +++  l+ ++ sl + l+r ++ee+++ +elaal  e ++l+++a+ ++l++a a+l+a  r+ ++ ++   +a+ + +ll++ + +
  KOO22258.1 190 AAAVRDVFVLTGSIESLSTDLRRSQKEEDDRKAELAALSTEGKQLKERASNAELAKAKAELEANERKEQQVEAerRAAHEKNRLLEEKLRE 280
                 667788999999********************************98888888888888888887777666666454444444444443333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (617 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1496  (0.0834402); expected 358.6 (0.02)
Passed bias filter:                      771  (0.043003); expected 358.6 (0.02)
Passed Vit filter:                       104  (0.00580066); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.78u 0.29s 00:00:01.07 Elapsed: 00:00:00.45
# Mc/sec: 4145.10
//
Query:       KOO22259.1  [L=150]
Description: hypothetical protein Ctob_004764 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (150 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       294  (0.016398); expected 358.6 (0.02)
Passed bias filter:                      220  (0.0122706); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.23s 00:00:00.60 Elapsed: 00:00:00.39
# Mc/sec: 1158.58
//
Query:       KOO22260.1  [L=470]
Description: hypothetical protein Ctob_004769 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.3e-05   24.3   7.2       0.16   12.1   0.3    4.6  4  Arm       Armadillo/beta-catenin-like repeat
    0.00064   20.2   8.1       0.34   11.5   0.2    4.3  3  HEAT_EZ   HEAT-like repeat
    0.00085   18.9   0.4      0.024   14.1   0.0    2.7  4  Arm_2     Armadillo-like
  ------ inclusion threshold ------
      0.076   13.3   7.4        3.9    8.0   0.2    4.4  4  HEAT      HEAT repeat


Domain annotation for each model (and alignments):
>> Arm  Armadillo/beta-catenin-like repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.3   0.0      0.19   8.3e+02      10      29 ..      53      72 ..      46      74 .. 0.81
   2 !   10.2   0.4   0.00013       0.6      16      41 .]     163     188 ..     160     188 .. 0.92
   3 ?    1.2   0.0     0.096   4.3e+02      14      29 ..     259     274 ..     256     275 .. 0.85
   4 !   12.1   0.3   3.5e-05      0.16      10      41 .]     343     374 ..     339     374 .. 0.94

  Alignments for each domain:
  == domain 1  score: 0.3 bits;  conditional E-value: 0.19
                HTTHHHHHHHHTTTSSHHHH CS
         Arm 10 eaGavppLvrLLssedeevq 29
                ++ av +L+++ +++  +vq
  KOO22260.1 53 RSAAVNALISMSQNPEARVQ 72
                4448999**99999999998 PP

  == domain 2  score: 10.2 bits;  conditional E-value: 0.00013
                 HHHHHTTTSSHHHHHHHHHHHHHHTT CS
         Arm  16 pLvrLLssedeevqeeAawALsNLaa 41 
                 +L++LL++++ e ++ AawA sNLa+
  KOO22260.1 163 ALLALLRHGSREGCRHAAWASSNLAS 188
                 8*******************999985 PP

  == domain 3  score: 1.2 bits;  conditional E-value: 0.096
                 HHHHHHHTTTSSHHHH CS
         Arm  14 vppLvrLLssedeevq 29 
                 v+  vr+ +s+d+e+q
  KOO22260.1 259 VKLIVRCAESTDPEIQ 274
                 677899999******9 PP

  == domain 4  score: 12.1 bits;  conditional E-value: 3.5e-05
                 HTTHHHHHHHHTTTSSHHHHHHHHHHHHHHTT CS
         Arm  10 eaGavppLvrLLssedeevqeeAawALsNLaa 41 
                 e G+v pL++LL s +++v+  A +A+ NL++
  KOO22260.1 343 EDGVVAPLLQLLCSCNQMVRVYAGRAVLNLSR 374
                 78****************************97 PP

>> HEAT_EZ  HEAT-like repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.5   0.1     0.098   4.4e+02      23      44 ..      50      71 ..      35      82 .. 0.67
   2 !    8.8   0.6   0.00054       2.4       5      42 ..     177     214 ..     163     221 .. 0.89
   3 !   11.5   0.2   7.5e-05      0.34       8      51 ..     325     368 ..     322     372 .. 0.82

  Alignments for each domain:
  == domain 1  score: 1.5 bits;  conditional E-value: 0.098
     HEAT_EZ 23 qplvpeilpaLlalLnddsdeV 44
                +++ ++++ aL+++ ++++++V
  KOO22260.1 50 AGVRSAAVNALISMSQNPEARV 71
                5555566666666666666665 PP

  == domain 2  score: 8.8 bits;  conditional E-value: 0.00054
     HEAT_EZ   5 raAawaLGrlaggepellqplvpeilpaLlalLnddsd 42 
                 r+Aawa ++la+ +p + + l+pe l+ Ll l +d  +
  KOO22260.1 177 RHAAWASSNLASSRPVAPSMLQPEFLDVLLCLCEDNTA 214
                 78*****99*********************88888765 PP

  == domain 3  score: 11.5 bits;  conditional E-value: 7.5e-05
     HEAT_EZ   8 awaLGrlaggepellqplvpeilpaLlalLnddsdeVRaaAaga 51 
                 a+aL++l ++   + ++  + ++++Ll+lL++++++VR +A +a
  KOO22260.1 325 ARALACLTVHQHYHRNLSEDGVVAPLLQLLCSCNQMVRVYAGRA 368
                 566666666667777778899******************99887 PP

>> Arm_2  Armadillo-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.0   0.0       1.8     8e+03      74      87 ..      56      69 ..      51      75 .. 0.50
   2 ?   -3.2   0.0         1   4.5e+03     151     166 ..     198     213 ..     193     220 .. 0.60
   3 ?    1.8   0.0     0.031   1.4e+02      13      40 ..     257     284 ..     249     317 .. 0.80
   4 !   14.1   0.0   5.4e-06     0.024     113     169 ..     322     380 ..     316     391 .. 0.87

  Alignments for each domain:
  == domain 1  score: -4.0 bits;  conditional E-value: 1.8
       Arm_2 74 alnalnnlsenven 87
                a+nal  +s+n e 
  KOO22260.1 56 AVNALISMSQNPEA 69
                44444444444444 PP

  == domain 2  score: -3.2 bits;  conditional E-value: 1
       Arm_2 151 kvqvLkvllnlseNpa 166
                 + + L vll+l e ++
  KOO22260.1 198 QPEFLDVLLCLCEDNT 213
                 4455667777766443 PP

  == domain 3  score: 1.8 bits;  conditional E-value: 0.031
       Arm_2  13 elekllalLkssedpliqeialltlgns 40 
                  l kl+ +   s+dp iq   ll+lg+ 
  KOO22260.1 257 RLVKLIVRCAESTDPEIQSSGLLVLGVW 284
                 688999999****************974 PP

  == domain 4  score: 14.1 bits;  conditional E-value: 5.4e-06
       Arm_2 113 lagLklltnlsvtneyqhllvs..yisellsLLskGnekikvqvLkvllnlseNpamtr 169
                 l g + l  l+v+++y+  l +   ++ ll+LL + n+ ++v+  +  lnls N +   
  KOO22260.1 322 LRGARALACLTVHQHYHRNLSEdgVVAPLLQLLCSCNQMVRVYAGRAVLNLSRNDDEHS 380
                 677889999********9998633699***************************98765 PP

>> HEAT  HEAT repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.2   0.1     0.015        67      16      29 ..      52      65 ..      49      66 .. 0.87
   2 ?   -3.1   0.1       3.1   1.4e+04       2      12 ..     202     212 ..     201     215 .. 0.75
   3 ?    2.6   0.0     0.047   2.1e+02       1      29 [.     258     286 ..     258     288 .. 0.86
   4 ?    8.0   0.2   0.00088       3.9       4      28 ..     349     373 ..     346     375 .. 0.86

  Alignments for each domain:
  == domain 1  score: 4.2 bits;  conditional E-value: 0.015
                HHHHHHHHHHHHHH CS
        HEAT 16 VReaAakaLgalae 29
                VR+aA++aL  +++
  KOO22260.1 52 VRSAAVNALISMSQ 65
                9********99876 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 3.1
                 HHHHHHHHT-S CS
        HEAT   2 lPlllkllsDp 12 
                 l++ll l++D+
  KOO22260.1 202 LDVLLCLCEDN 212
                 78889999886 PP

  == domain 3  score: 2.6 bits;  conditional E-value: 0.047
                 HHHHHHHHHT-SSHHHHHHHHHHHHHHHH CS
        HEAT   1 llPlllkllsDpspeVReaAakaLgalae 29 
                 l+ l++++ ++++pe+ ++ ++ Lg  +e
  KOO22260.1 258 LVKLIVRCAESTDPEIQSSGLLVLGVWSE 286
                 577899999*********99999998766 PP

  == domain 4  score: 8.0 bits;  conditional E-value: 0.00088
                 HHHHHHT-SSHHHHHHHHHHHHHHH CS
        HEAT   4 lllkllsDpspeVReaAakaLgala 28 
                 +ll+ll++++  VR  A +a+ +l+
  KOO22260.1 349 PLLQLLCSCNQMVRVYAGRAVLNLS 373
                 689**************99988776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (470 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       504  (0.0281109); expected 358.6 (0.02)
Passed bias filter:                      369  (0.0205812); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.53u 0.23s 00:00:00.76 Elapsed: 00:00:00.42
# Mc/sec: 3382.23
//
Query:       KOO22261.1  [L=335]
Description: transmembrane protein 19-like protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.6e-77  260.1   5.2    1.6e-77  260.1   5.2    1.5  2  DUF92     Integral membrane protein DUF92
  ------ inclusion threshold ------
        2.9    8.0   5.1        3.7    7.7   1.7    2.5  2  CrgA      Cell division protein CrgA


Domain annotation for each model (and alignments):
>> DUF92  Integral membrane protein DUF92
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.5      0.41   3.7e+03      19      35 ..       7      23 ..       2      39 .. 0.44
   2 !  260.1   5.2   1.8e-81   1.6e-77       2     235 ..      49     321 ..      48     322 .. 0.93

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 0.41
       DUF92 19 sGalaavlvgvlialap 35
                + + +a++ +++ a a+
  KOO22261.1  7 ASLTSAIAAAAAAAGAK 23
                33333333333333333 PP

  == domain 2  score: 260.1 bits;  conditional E-value: 1.8e-81
       DUF92   2 ltlllalralrkksLtpsGalaavlvgvlialaplgllffllllvFfllgslltkvkkkvKakleeek..egaRdavqVlanslvalllally...... 92 
                 l+l++ +r++rk+sL++sGa  a++vg++ ++a+++  f+++l+vFfl +s++t++++++K+k+e+ +  +g+R++vqV an+++++++a l+      
  KOO22261.1  49 LALAISVRGYRKGSLNRSGATLALFVGFISCAASVS--FGITLIVFFLGSSKVTRIGAEKKKKIEDGHqvGGNRNWVQVAANGGFGTAVAWLFltrwmp 145
                 68999***********************99999777..****************************9955688************************** PP

       DUF92  93 ...............lasdlllvgivasyAavaaDTlaSElGkilskskprlit.tlkkvppGtnGgVsllGllasllGalliall.avlllllel... 171
                                + +++l +++v +yAa++aDT+aSElG +ls+ kprlit  +++vp+GtnGgV+++G++as++G+l+i+l+ ++++l++ +   
  KOO22261.1 146 lglpaelpldnarhpV-ETWLQLAYVCHYAACNADTWASELG-VLSTVKPRLITaPWREVPTGTNGGVTVAGTAASAAGGLVIGLTfWLVGLVMRTswf 242
                 ********99986643.99***********************.88888******566***************************99555555555599* PP

       DUF92 172 ..............lillltlaGllGsllDSlLGatlqasvvdkrtgkvvegegge.kvvsGldlLdNnaVNllsallt 235
                               +++++ +aGllGs++DSlLGatlq+s+++++++ vve+++ + + +sG+d+L+N++VN+++a++t
  KOO22261.1 243 lsprllteappqwpVVFVGGAAGLLGSMIDSLLGATLQYSGWCSKKKLVVEEPSDTsTRISGWDVLSNHQVNFFAAAFT 321
                 *************99999**********************************98888778***************9987 PP

>> CrgA  Cell division protein CrgA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.6   0.1     0.068   6.1e+02      18      50 ..     107     139 ..      94     144 .. 0.69
   2 ?    7.7   1.7   0.00042       3.7      70      87 ..     224     241 ..     212     242 .. 0.91

  Alignments for each domain:
  == domain 1  score: 0.6 bits;  conditional E-value: 0.068
        CrgA  18 ertpvkakaakpsprwyvpvmlglmllGllwlv 50 
                 +++ +  ++  ++++w+++   g +   ++wl 
  KOO22261.1 107 KKKIEDGHQVGGNRNWVQVAANGGFGTAVAWLF 139
                 334444456888999999998888888888886 PP

  == domain 2  score: 7.7 bits;  conditional E-value: 0.00042
        CrgA  70 lliGfgliivGllmttrW 87 
                 l+iG+++ +vGl+m t W
  KOO22261.1 224 LVIGLTFWLVGLVMRTSW 241
                 89**************** PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (335 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       738  (0.0411624); expected 358.6 (0.02)
Passed bias filter:                      438  (0.0244297); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.50u 0.25s 00:00:00.75 Elapsed: 00:00:00.43
# Mc/sec: 2330.01
//
Query:       KOO22262.1  [L=199]
Description: prefoldin subunit 3 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.2e-23   83.3   0.7    1.8e-23   82.7   0.7    1.3  1  Prefoldin  Prefoldin subunit


Domain annotation for each model (and alignments):
>> Prefoldin  Prefoldin subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   82.7   0.7     1e-27   1.8e-23       3     120 .]      53     175 ..      51     175 .. 0.95

  Alignments for each domain:
  == domain 1  score: 82.7 bits;  conditional E-value: 1e-27
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT....-TT-EEEEEEETTEEEEEE-..-STTEEEEEEETTEEEEEEHHHHHHHHHHHHHHHHHHHHHH CS
   Prefoldin   3 eeleslqaelaqlkeaieelektletlktlkk...edegkevlvplgaglyvkaev..kdtdkvlvdlGagyyveksleeAiellkkkleelekqlekl 96 
                 + +++l+++ ++lk +++e+ekt ++l  +++   ++e+  ++++l +++ +ka v   + dkv+++lGa++++e++  eAi+ll ++l++ +k+l + 
  KOO22262.1  53 FIEQRLTQKKNKLKMKKPEIEKTYAALCAMEEqakKGEPLVMHYELAQSVSAKAIVnvHESDKVCLWLGANVMLEYPRAEAIALLAQQLADCKKALATT 151
                 56789**************************999999999*************966548999************************************* PP

                 HHHHHHHHHHHHHHHHHHHHHHHH CS
   Prefoldin  97 eeeleklkdqittleanlaqlyqk 120
                  ++  +l+dqitt+e+n+a++ ++
  KOO22262.1 152 IDDMGFLRDQITTTEVNMARVFNW 175
                 ********************9987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (199 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1415  (0.0789224); expected 358.6 (0.02)
Passed bias filter:                      641  (0.0357521); expected 358.6 (0.02)
Passed Vit filter:                        48  (0.00267723); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.23s 00:00:00.69 Elapsed: 00:00:00.39
# Mc/sec: 1521.77
//
Query:       KOO22263.1  [L=564]
Description: hypothetical protein Ctob_003994 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    7.2e-30  100.5  13.1    5.7e-05   22.9   0.0    7.4  7  LRR_6           Leucine Rich repeat
     0.0036   17.6   0.0         21    6.2   0.0    4.7  5  LRR_1           Leucine Rich Repeat
  ------ inclusion threshold ------
      0.083   12.7   0.2         12    5.8   0.0    3.8  5  LRR_8           Leucine rich repeat
       0.11   12.9   7.1         37    4.8   0.1    4.8  5  HOASN           Haem-oxygenase-associated N-terminal helices
        0.2   12.1   2.1         11    6.6   0.0    3.9  4  LRR_4           Leucine Rich repeats (2 copies)
       0.54   10.3   7.0         12    6.0   0.0    4.6  5  CbiG_N          Cobalamin synthesis G N-terminal
        7.2    6.8  10.3         29    4.9   0.2    4.5  5  Arm-DNA-bind_1  Bacteriophage lambda integrase, Arm DNA-bindi


Domain annotation for each model (and alignments):
>> LRR_6  Leucine Rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.9   0.0   2.2e-08   5.7e-05       5      23 ..     385     403 ..     385     404 .. 0.96
   2 !   13.0   0.1   3.3e-05     0.084       2      17 ..     410     425 ..     409     426 .. 0.86
   3 !   10.9   0.2   0.00016       0.4      11      24 .]     426     439 ..     426     439 .. 0.96
   4 !   15.3   0.1   5.9e-06     0.015       2      24 .]     445     467 ..     444     467 .. 0.92
   5 !   21.6   0.0   5.6e-08   0.00014       2      24 .]     473     495 ..     472     495 .. 0.93
   6 !   10.4   0.1   0.00022      0.57       2      24 .]     501     523 ..     500     523 .. 0.91
   7 !   10.2   0.0   0.00026      0.65       2      19 ..     529     546 ..     528     550 .. 0.89

  Alignments for each domain:
  == domain 1  score: 22.9 bits;  conditional E-value: 2.2e-08
       LRR_6   5 LteLdLsgNdIgDeGaeaL 23 
                 L++LdLs N+Ig eGa+aL
  KOO22263.1 385 LRTLDLSRNKIGPEGASAL 403
                 89****************9 PP

  == domain 2  score: 13.0 bits;  conditional E-value: 3.3e-05
       LRR_6   2 nthLteLdLsgNdIgD 17 
                 n  +t+LdL +N+IgD
  KOO22263.1 410 NAVVTTLDLGWNKIGD 425
                 55689**********9 PP

  == domain 3  score: 10.9 bits;  conditional E-value: 0.00016
       LRR_6  11 sgNdIgDeGaeaLa 24 
                 s+N IgD Ga+a+a
  KOO22263.1 426 SWNSIGDNGAKAIA 439
                 8***********98 PP

  == domain 4  score: 15.3 bits;  conditional E-value: 5.9e-06
       LRR_6   2 nthLteLdLsgNdIgDeGaeaLa 24 
                 n  Lt+L L gN+Ig eGa+a+a
  KOO22263.1 445 NAVLTKLKLLGNNIGPEGAIAIA 467
                 6679*****************98 PP

  == domain 5  score: 21.6 bits;  conditional E-value: 5.6e-08
       LRR_6   2 nthLteLdLsgNdIgDeGaeaLa 24 
                 n  Lt+L+L +N IgD+Ga+a+a
  KOO22263.1 473 NAVLTKLELGYNSIGDDGAKAIA 495
                 667******************98 PP

  == domain 6  score: 10.4 bits;  conditional E-value: 0.00022
       LRR_6   2 nthLteLdLsgNdIgDeGaeaLa 24 
                 n  +t+LdL g +Ig eGa+a+a
  KOO22263.1 501 NAVMTTLDLGGDNIGVEGAKAIA 523
                 5668*****************98 PP

  == domain 7  score: 10.2 bits;  conditional E-value: 0.00026
       LRR_6   2 nthLteLdLsgNdIgDeG 19 
                 n  Lt L+++ N++gD+G
  KOO22263.1 529 NAVLTRLNIQVNNMGDAG 546
                 667*************99 PP

>> LRR_1  Leucine Rich Repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.2   0.0    0.0083        21       2      13 ..     385     396 ..     384     405 .. 0.80
   2 ?    3.3   0.0     0.073   1.9e+02       3      19 ..     414     429 ..     413     436 .. 0.78
   3 ?    1.1   0.0      0.37   9.4e+02       2      17 ..     476     491 ..     476     497 .. 0.81
   4 ?   -2.0   0.0         4     1e+04       4      13 ..     506     515 ..     505     523 .. 0.73
   5 ?   -2.0   0.0       4.1     1e+04       2      11 ..     532     541 ..     532     550 .. 0.81

  Alignments for each domain:
  == domain 1  score: 6.2 bits;  conditional E-value: 0.0083
       LRR_1   2 LrhLdLsnnpll 13 
                 Lr+LdLs+n ++
  KOO22263.1 385 LRTLDLSRNKIG 396
                 9********984 PP

  == domain 2  score: 3.3 bits;  conditional E-value: 0.073
       LRR_1   3 rhLdLsnnpllglppns 19 
                 ++LdL++n + g + ns
  KOO22263.1 414 TTLDLGWNKI-GDSWNS 429
                 68******99.555555 PP

  == domain 3  score: 1.1 bits;  conditional E-value: 0.37
       LRR_1   2 LrhLdLsnnpllglpp 17 
                 L++L L++n++++ ++
  KOO22263.1 476 LTKLELGYNSIGDDGA 491
                 899*******977665 PP

  == domain 4  score: -2.0 bits;  conditional E-value: 4
       LRR_1   4 hLdLsnnpll 13 
                 +LdL++ +++
  KOO22263.1 506 TLDLGGDNIG 515
                 89**988775 PP

  == domain 5  score: -2.0 bits;  conditional E-value: 4.1
       LRR_1   2 LrhLdLsnnp 11 
                 L++L++  n+
  KOO22263.1 532 LTRLNIQVNN 541
                 899**98876 PP

>> LRR_8  Leucine rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.8   0.0    0.0046        12      49      61 .]     383     395 ..     377     397 .. 0.57
   2 ?   -2.3   0.0       1.5   3.9e+03      52      61 .]     414     423 ..     404     424 .. 0.64
   3 ?   -2.5   0.1       1.8   4.5e+03      51      61 .]     448     458 ..     439     458 .. 0.59
   4 ?    1.7   0.0     0.088   2.3e+02      27      38 ..     476     487 ..     467     514 .. 0.76
   5 ?   -2.6   0.0       1.9   4.8e+03       3      16 ..     532     545 ..     530     552 .. 0.65

  Alignments for each domain:
  == domain 1  score: 5.8 bits;  conditional E-value: 0.0046
                 -S-.EEE--SS-- CS
       LRR_8  49 psLrsLdLsgNrL 61 
                 ++Lr LdLs+N++
  KOO22263.1 383 AALRTLDLSRNKI 395
                 4455555555543 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 1.5
                 .EEE--SS-- CS
       LRR_8  52 rsLdLsgNrL 61 
                 + LdL +N++
  KOO22263.1 414 TTLDLGWNKI 423
                 4555555554 PP

  == domain 3  score: -2.5 bits;  conditional E-value: 1.8
                 -.EEE--SS-- CS
       LRR_8  51 LrsLdLsgNrL 61 
                 L++L L gN++
  KOO22263.1 448 LTKLKLLGNNI 458
                 45555555544 PP

  == domain 4  score: 1.7 bits;  conditional E-value: 0.088
                 --EEE--SS--- CS
       LRR_8  27 LkvLdLsnNllt 38 
                 L+ L+L++N++ 
  KOO22263.1 476 LTKLELGYNSIG 487
                 777777777775 PP

  == domain 5  score: -2.6 bits;  conditional E-value: 1.9
                 -SEEE-TTS--SEE CS
       LRR_8   3 LtsLdLsnNrltsl 16 
                 Lt+L+++ N+  + 
  KOO22263.1 532 LTRLNIQVNNMGDA 545
                 67777777776555 PP

>> HOASN  Haem-oxygenase-associated N-terminal helices
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.3   0.0      0.18   4.6e+02      13      42 ..     394     423 ..     384     426 .. 0.77
   2 ?    2.3   0.1     0.086   2.2e+02      17      37 ..     433     453 ..     425     459 .. 0.82
   3 ?    2.4   0.0      0.08     2e+02      16      39 ..     460     483 ..     454     488 .. 0.79
   4 ?    1.8   0.0      0.13   3.2e+02      18      38 ..     490     510 ..     484     515 .. 0.80
   5 ?    4.8   0.1     0.014        37      13      41 ..     513     541 ..     508     556 .. 0.84

  Alignments for each domain:
  == domain 1  score: 1.3 bits;  conditional E-value: 0.18
                 T--SHHHHHHHHHTSTT--HHHHHHHHHHH CS
       HOASN  13 nlpieeaalladalkvgasldqidlalekl 42 
                 ++  e a  l +alkv+a +  +dl  +k+
  KOO22263.1 394 KIGPEGASALGEALKVNAVVTTLDLGWNKI 423
                 45557788899********99999887776 PP

  == domain 2  score: 2.3 bits;  conditional E-value: 0.086
                 HHHHHHHHHTSTT--HHHHHH CS
       HOASN  17 eeaalladalkvgasldqidl 37 
                 + a+ +a+alkv+a l +++l
  KOO22263.1 433 NGAKAIAEALKVNAVLTKLKL 453
                 67899*********9988765 PP

  == domain 3  score: 2.4 bits;  conditional E-value: 0.08
                 SHHHHHHHHHTSTT--HHHHHHHH CS
       HOASN  16 ieeaalladalkvgasldqidlal 39 
                  e a  +a+alkv+a l +++l  
  KOO22263.1 460 PEGAIAIAEALKVNAVLTKLELGY 483
                 5667789*********99988765 PP

  == domain 4  score: 1.8 bits;  conditional E-value: 0.13
                 HHHHHHHHTSTT--HHHHHHH CS
       HOASN  18 eaalladalkvgasldqidla 38 
                  a+ +a+alkv+a +  +dl 
  KOO22263.1 490 GAKAIAEALKVNAVMTTLDLG 510
                 57889********99888876 PP

  == domain 5  score: 4.8 bits;  conditional E-value: 0.014
                 T--SHHHHHHHHHTSTT--HHHHHHHHHH CS
       HOASN  13 nlpieeaalladalkvgasldqidlalek 41 
                 n+ +e a+ +a+alkv+a l +++  +++
  KOO22263.1 513 NIGVEGAKAIAQALKVNAVLTRLNIQVNN 541
                 8899***************9998877665 PP

>> LRR_4  Leucine Rich repeats (2 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6   0.0    0.0043        11      24      36 ..     384     395 ..     374     404 .. 0.71
   2 ?   -0.2   0.5      0.61   1.6e+03      25      33 ..     448     456 ..     413     462 .. 0.45
   3 ?    1.1   0.0      0.23   5.9e+02       3      15 ..     476     488 ..     475     518 .. 0.62
   4 ?   -2.2   0.0       2.4   6.3e+03       3      12 ..     532     541 ..     530     545 .. 0.66

  Alignments for each domain:
  == domain 1  score: 6.6 bits;  conditional E-value: 0.0043
                 T--EEE-.-S--- CS
       LRR_4  24 nLkeLdLsgNnli 36 
                  L++LdLs+N +i
  KOO22263.1 384 ALRTLDLSRN-KI 395
                 5677777666.44 PP

  == domain 2  score: -0.2 bits;  conditional E-value: 0.61
                 --EEE-.-S CS
       LRR_4  25 LkeLdLsgN 33 
                 L++L L gN
  KOO22263.1 448 LTKLKLLGN 456
                 455555455 PP

  == domain 3  score: 1.1 bits;  conditional E-value: 0.23
                 --EEE--SS---E CS
       LRR_4   3 LevLdLsnNqltd 15 
                 L++L L+ N + d
  KOO22263.1 476 LTKLELGYNSIGD 488
                 7889999888886 PP

  == domain 4  score: -2.2 bits;  conditional E-value: 2.4
                 --EEE--.SS- CS
       LRR_4   3 LevLdLs.nNq 12 
                 L+ L+++ n +
  KOO22263.1 532 LTRLNIQvN-N 541
                 677777744.3 PP

>> CbiG_N  Cobalamin synthesis G N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.2   0.0       0.3   7.8e+02      64      79 ..     400     415 ..     394     417 .. 0.87
   2 ?    1.6   0.1      0.11   2.9e+02      61      78 ..     432     449 ..     428     452 .. 0.87
   3 ?   -0.8   0.0      0.61   1.6e+03      64      78 ..     463     477 ..     455     480 .. 0.86
   4 ?    6.0   0.0    0.0047        12      60      79 ..     487     506 ..     481     508 .. 0.88
   5 ?    1.5   0.1      0.12   3.1e+02      61      78 ..     516     533 ..     509     535 .. 0.80

  Alignments for each domain:
  == domain 1  score: 0.2 bits;  conditional E-value: 0.3
                 HHHHHHHTT-EE-XXX CS
      CbiG_N  64 AeeiaallgaepviTt 79 
                 A+ + ++l++++v+Tt
  KOO22263.1 400 ASALGEALKVNAVVTT 415
                 888999*********9 PP

  == domain 2  score: 1.6 bits;  conditional E-value: 0.11
                 HHHHHHHHHHTT-EE-XX CS
      CbiG_N  61 nelAeeiaallgaepviT 78 
                 ++ A+ ia++l++++v+T
  KOO22263.1 432 DNGAKAIAEALKVNAVLT 449
                 56799***********99 PP

  == domain 3  score: -0.8 bits;  conditional E-value: 0.61
                 HHHHHHHTT-EE-XX CS
      CbiG_N  64 AeeiaallgaepviT 78 
                 A  ia++l++++v+T
  KOO22263.1 463 AIAIAEALKVNAVLT 477
                 7789*********99 PP

  == domain 4  score: 6.0 bits;  conditional E-value: 0.0047
                 HHHHHHHHHHHTT-EE-XXX CS
      CbiG_N  60 AnelAeeiaallgaepviTt 79 
                 +++ A+ ia++l++++v+Tt
  KOO22263.1 487 GDDGAKAIAEALKVNAVMTT 506
                 6788***************9 PP

  == domain 5  score: 1.5 bits;  conditional E-value: 0.12
                 HHHHHHHHHHTT-EE-XX CS
      CbiG_N  61 nelAeeiaallgaepviT 78 
                  e A+ ia++l++++v+T
  KOO22263.1 516 VEGAKAIAQALKVNAVLT 533
                 56799***********99 PP

>> Arm-DNA-bind_1  Bacteriophage lambda integrase, Arm DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.9   0.2     0.011        29      41      61 ..     429     449 ..     423     457 .. 0.88
   2 ?   -0.7   0.0      0.62   1.6e+03      42      61 ..     458     477 ..     450     481 .. 0.84
   3 ?    3.9   0.1     0.024        61      41      60 ..     485     504 ..     482     508 .. 0.89
   4 ?    0.9   0.2      0.21   5.3e+02      42      61 ..     514     533 ..     513     541 .. 0.84
   5 ?   -1.7   0.0       1.3   3.2e+03      41      55 ..     541     555 ..     535     556 .. 0.87

  Alignments for each domain:
  == domain 1  score: 4.9 bits;  conditional E-value: 0.011
                     EEESSHHHHHHHHHHHHHHHT CS
  Arm-DNA-bind_1  41 sLGtdereAieeAveaNtrla 61 
                     s+G++ ++Ai+eA++ N  l 
      KOO22263.1 429 SIGDNGAKAIAEALKVNAVLT 449
                     79***************9885 PP

  == domain 2  score: -0.7 bits;  conditional E-value: 0.62
                     EESSHHHHHHHHHHHHHHHT CS
  Arm-DNA-bind_1  42 LGtdereAieeAveaNtrla 61 
                     +G + + Ai+eA++ N  l 
      KOO22263.1 458 IGPEGAIAIAEALKVNAVLT 477
                     5777889*********9885 PP

  == domain 3  score: 3.9 bits;  conditional E-value: 0.024
                     EEESSHHHHHHHHHHHHHHH CS
  Arm-DNA-bind_1  41 sLGtdereAieeAveaNtrl 60 
                     s+G+d ++Ai+eA++ N  +
      KOO22263.1 485 SIGDDGAKAIAEALKVNAVM 504
                     78***************865 PP

  == domain 4  score: 0.9 bits;  conditional E-value: 0.21
                     EESSHHHHHHHHHHHHHHHT CS
  Arm-DNA-bind_1  42 LGtdereAieeAveaNtrla 61 
                     +G + ++Ai++A++ N  l 
      KOO22263.1 514 IGVEGAKAIAQALKVNAVLT 533
                     577889**********9885 PP

  == domain 5  score: -1.7 bits;  conditional E-value: 1.3
                     EEESSHHHHHHHHHH CS
  Arm-DNA-bind_1  41 sLGtdereAieeAve 55 
                      +G++ ++A+++Av+
      KOO22263.1 541 NMGDAGKKAVQDAVK 555
                     689999*******95 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (564 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       328  (0.0182944); expected 358.6 (0.02)
Passed bias filter:                      283  (0.0157845); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.55u 0.26s 00:00:00.81 Elapsed: 00:00:00.43
# Mc/sec: 3975.54
//
Query:       KOO22264.1  [L=192]
Description: swi-like protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    9.9e-10   38.1  12.7    1.3e-09   37.7  12.7    1.2  1  zf-C3HC4_3    Zinc finger, C3HC4 type (RING finger)
    1.8e-08   34.1   8.9    2.8e-08   33.5   8.9    1.3  1  zf-C3HC4      Zinc finger, C3HC4 type (RING finger)
    7.6e-08   32.1   9.0    1.2e-07   31.5   9.0    1.3  1  Prok-RING_4   Prokaryotic RING finger family 4
    1.5e-07   31.1   8.5    3.6e-07   29.9   8.7    1.6  1  zf-C3HC4_2    Zinc finger, C3HC4 type (RING finger)
    1.7e-06   28.0   6.0    2.2e-05   24.4   2.9    2.3  2  zf-RING_UBOX  RING-type zinc-finger
    3.5e-06   27.3  12.4    5.4e-06   26.6  12.4    1.3  1  zf-RING_2     Ring finger domain
    6.2e-06   26.1  11.5      1e-05   25.4  11.5    1.3  1  zf-RING_5     zinc-RING finger domain
    8.3e-05   22.7  10.1    0.00013   22.0  10.1    1.3  1  zf-C3HC4_4    zinc finger of C3HC4-type, RING
    0.00067   19.7   2.3    0.00097   19.1   2.3    1.3  1  zf-ANAPC11    Anaphase-promoting complex subunit 11 RING-H2 f
     0.0012   18.7   7.0     0.0023   17.8   7.0    1.4  1  zf-RING_6     zf-RING of BARD1-type protein
     0.0015   18.8   6.1     0.0026   18.0   6.1    1.3  1  zf-rbx1       RING-H2 zinc finger domain
  ------ inclusion threshold ------
      0.052   13.3   7.2       0.28   11.0   5.7    2.4  2  zf-RING_11    RING-like zinc finger
       0.73   10.0   8.2        1.3    9.2   8.2    1.4  1  zf-RING_10    zinc RING finger of MSL2
       0.91    9.4   6.0        1.5    8.7   6.0    1.3  1  zf-Nse        Zinc-finger of the MIZ type in Nse subunit
        1.8    8.4  10.2        3.3    7.6  10.2    1.4  1  zf-RING_4     RING/Ubox like zinc-binding domain
        4.8    7.2   9.7         13    5.9   4.9    2.2  2  DUF1644       Protein of unknown function (DUF1644)


Domain annotation for each model (and alignments):
>> zf-C3HC4_3  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.7  12.7   1.2e-12   1.3e-09       2      49 ..      55     104 ..      54     105 .. 0.94

  Alignments for each domain:
  == domain 1  score: 37.7 bits;  conditional E-value: 1.2e-12
                 GSB-TTTSSSBS-EEETTEEEEEE-HHHHHHHHH...TT-B-TTT--B--E CS
  zf-C3HC4_3   2 deeCviClerprnvvllpCgHlvlCeeCaekllk...rkkkCpiCrrpiek 49 
                 +++CviCl++p+++v+ +C H+ +C eC + +l+     + Cp+Cr+ +++
  KOO22264.1  55 QSCCVICLDAPEDAVITNCAHV-FCRECISGCLAnamGAAPCPVCRETVHR 104
                 579*******************.**********999999********9875 PP

>> zf-C3HC4  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.5   8.9   2.5e-11   2.8e-08       1      41 []      58      98 ..      58      98 .. 0.97

  Alignments for each domain:
  == domain 1  score: 33.5 bits;  conditional E-value: 2.5e-11
                -TTT-S--SS-E.E-TTS--B-CHHHHHHHHC.TSSB--TTT CS
    zf-C3HC4  1 CpiCleeakepnelleCkHsfCskCirkilks.rkkvkCPlC 41
                C iCl+ +++++ +++C H fC++Ci+ +l +  ++ +CP+C
  KOO22264.1 58 CVICLDAPEDAV-ITNCAHVFCRECISGCLANaMGAAPCPVC 98
                9***********.******************9888889**** PP

>> Prok-RING_4  Prokaryotic RING finger family 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.5   9.0   1.1e-10   1.2e-07       1      43 [.      58     105 ..      58     108 .. 0.90

  Alignments for each domain:
  == domain 1  score: 31.5 bits;  conditional E-value: 1.1e-10
  Prok-RING_4   1 CvlCgeqekkailepCgHlvCkeCfdskdls.....sCPlCqrrisks 43 
                  Cv+C  ++++a++  C+H++C+eC ++   +      CP+C++ + ++
   KOO22264.1  58 CVICLDAPEDAVITNCAHVFCRECISGCLANamgaaPCPVCRETVHRA 105
                  **************************99666678889*****998766 PP

>> zf-C3HC4_2  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.9   8.7   3.2e-10   3.6e-07       2      40 .]      58      98 ..      57      98 .. 0.89

  Alignments for each domain:
  == domain 1  score: 29.9 bits;  conditional E-value: 3.2e-10
  zf-C3HC4_2  2 CpiCldmlkdpsvvtpCgHvfCqkCilrsLeekn...eCPlC 40
                C iCld  +d+ v+t+C HvfC++Ci   L +      CP+C
  KOO22264.1 58 CVICLDAPEDA-VITNCAHVFCRECISGCLANAMgaaPCPVC 98
                **********9.***************99887543368***9 PP

>> zf-RING_UBOX  RING-type zinc-finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.4   2.9     2e-08   2.2e-05       1      25 [.      58      82 ..      58      92 .. 0.82
   2 ?    4.3   0.1     0.036        40       1       9 [.      95     103 ..      95     113 .. 0.78

  Alignments for each domain:
  == domain 1  score: 24.4 bits;  conditional E-value: 2e-08
  zf-RING_UBOX  1 CpIClelftdPlv.lpCGHtFCreCl 25
                  C ICl+  +d  v ++C H+FCreC+
    KOO22264.1 58 CVICLDAPEDA-ViTNCAHVFCRECI 82
                  99***988888.5379********** PP

  == domain 2  score: 4.3 bits;  conditional E-value: 0.036
  zf-RING_UBOX   1 CpIClelft 9  
                   Cp+C+e+ +
    KOO22264.1  95 CPVCRETVH 103
                   *****9865 PP

>> zf-RING_2  Ring finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.6  12.4   4.8e-09   5.4e-06       2      44 .]      57      99 ..      56      99 .. 0.81

  Alignments for each domain:
  == domain 1  score: 26.6 bits;  conditional E-value: 4.8e-09
   zf-RING_2  2 eCpICleelssadsvlllpCgHvfhreClerwlrssst...CPlCr 44
                 C+ICl++    ++++++ C Hvf+reC++  l++      CP+Cr
  KOO22264.1 57 CCVICLDAP---EDAVITNCAHVFCRECISGCLANAMGaapCPVCR 99
                5****9555...5556566************887776689*****9 PP

>> zf-RING_5  zinc-RING finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.4  11.5   8.9e-09     1e-05       2      43 ..      58      99 ..      56     100 .. 0.94

  Alignments for each domain:
  == domain 1  score: 25.4 bits;  conditional E-value: 8.9e-09
   zf-RING_5  2 CnkCfeklskeekfyltsCgHifCekClkkll...ekeavCpiCr 43
                C +C +     e++++t+C H+fC +C++ +l      a Cp+Cr
  KOO22264.1 58 CVICLDAP---EDAVITNCAHVFCRECISGCLanaMGAAPCPVCR 99
                89999999...99*******************9999999*****9 PP

>> zf-C3HC4_4  zinc finger of C3HC4-type, RING
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.0  10.1   1.2e-07   0.00013       1      42 []      58      98 ..      58      98 .. 0.98

  Alignments for each domain:
  == domain 1  score: 22.0 bits;  conditional E-value: 1.2e-07
  zf-C3HC4_4  1 CPiCldYLekPvsleCGhsfClsCisslqkepdgeqllCplC 42
                C iCld  e+ v  +C h+fC +Cis    ++ g+  +Cp+C
  KOO22264.1 58 CVICLDAPEDAVITNCAHVFCRECISGCLANAMGA-APCPVC 98
                99******************************998.****** PP

>> zf-ANAPC11  Anaphase-promoting complex subunit 11 RING-H2 finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.1   2.3   8.6e-07   0.00097      28      82 ..      51     103 ..      27     106 .. 0.83

  Alignments for each domain:
  == domain 1  score: 19.1 bits;  conditional E-value: 8.6e-07
                 -SBTTS--TTCSTTTTTS-EEEBTTS-EEEHHHHHHHHHHHSTSSB-TTTSSB-- CS
  zf-ANAPC11  28 rvsfdGtcpsckfpGddcplvlGkckhnfhlhcilkwletetskglcpmcrqtfk 82 
                  +  + +c  c    +d   v+ +c h+f   ci   l++      cp+cr+t++
  KOO22264.1  51 AMLLQSCCVICLDAPED--AVITNCAHVFCRECISGCLANAMGAAPCPVCRETVH 103
                 56677888888654444..4889****************************9876 PP

>> zf-RING_6  zf-RING of BARD1-type protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.8   7.0     2e-06    0.0023      10      48 ..      58     100 ..      48     109 .. 0.70

  Alignments for each domain:
  == domain 1  score: 17.8 bits;  conditional E-value: 2e-06
   zf-RING_6  10 csrctdilrepvclggcehifcsncisdcfgsg.....cpvcyt 48 
                 c  c d   e   +  c h+fc +cis c+        cpvc  
  KOO22264.1  58 CVICLDAP-EDAVITNCAHVFCRECISGCLANAmgaapCPVCRE 100
                 55666654.4456899*************8542223349**965 PP

>> zf-rbx1  RING-H2 zinc finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.0   6.1   2.3e-06    0.0026      10      55 .]      54      99 ..      48      99 .. 0.89

  Alignments for each domain:
  == domain 1  score: 18.0 bits;  conditional E-value: 2.3e-06
     zf-rbx1 10 leeacieckapgdeecpvvlGeCgHaFHlhCiskWlkt...rkvCPlcr 55
                l+++c+ c    ++    v+ +C H+F  +Cis  l +    + CP+cr
  KOO22264.1 54 LQSCCVICLDAPED---AVITNCAHVFCRECISGCLANamgAAPCPVCR 99
                67899999988888...67779****************999999****8 PP

>> zf-RING_11  RING-like zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   5.7   0.00025      0.28       2      29 .]      58      82 ..      58      82 .. 0.86
   2 ?    1.0   0.0      0.33   3.7e+02       2      17 ..      95     110 ..      95     112 .. 0.80

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00025
  zf-RING_11  2 CsICLeefkpgqalfilpCsHtFHfkCI 29
                C+ICL+    ++a+ i+ C H+F  +CI
  KOO22264.1 58 CVICLDAP--EDAV-ITNCAHVFCRECI 82
                ******75..6677.55**********9 PP

  == domain 2  score: 1.0 bits;  conditional E-value: 0.33
  zf-RING_11   2 CsICLeefkpgqalfi 17 
                 C +C e++ + + l++
  KOO22264.1  95 CPVCRETVHRADLLTL 110
                 9*****9998876655 PP

>> zf-RING_10  zinc RING finger of MSL2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.2   8.2    0.0011       1.3       3      44 ..      57      99 ..      53     109 .. 0.71

  Alignments for each domain:
  == domain 1  score: 9.2 bits;  conditional E-value: 0.0011
  zf-RING_10  3 CvvCckLLvdPlepkekeCqHyvCrlCvgk...kkklkpsCsqCk 44
                C+v c  L  P  +  ++C H  Cr C+ +   + +  + C+ C+
  KOO22264.1 57 CCVIC--LDAPEDAVITNCAHVFCRECISGclaNAMGAAPCPVCR 99
                43333..899*****************987221222344577776 PP

>> zf-Nse  Zinc-finger of the MIZ type in Nse subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.7   6.0    0.0013       1.5      28      56 ..      71      98 ..      53      99 .. 0.79

  Alignments for each domain:
  == domain 1  score: 8.7 bits;  conditional E-value: 0.0013
                SSS--EEEHHHHHHHC.TTTS-EE-SCCC- CS
      zf-Nse 28 kkCpHvFEreaIleli.krkktvkCPvagC 56
                ++C HvF re I   + +   ++ CPv  C
  KOO22264.1 71 TNCAHVFCRECISGCLaNAMGAAPCPV--C 98
                79**************6778999****..7 PP

>> zf-RING_4  RING/Ubox like zinc-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.6  10.2    0.0029       3.3       4      45 ..      58     100 ..      55     102 .. 0.76

  Alignments for each domain:
  == domain 1  score: 7.6 bits;  conditional E-value: 0.0029
   zf-RING_4   4 CdeeldetdkdlkpCeCgyqiClfCyhrileee..egrCPaCre 45 
                 C+ +ld+ +++    +C + +C+ C +  l+++  ++ CP Cre
  KOO22264.1  58 CVICLDAPEDA-VITNCAHVFCRECISGCLANAmgAAPCPVCRE 100
                 55555555444.4569************9997544899*****8 PP

>> DUF1644  Protein of unknown function (DUF1644)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.9   4.9     0.011        13       4      22 ..      57      75 ..      55      88 .. 0.83
   2 ?    3.7   0.2     0.052        58       4      18 ..      94     108 ..      91     115 .. 0.75

  Alignments for each domain:
  == domain 1  score: 5.9 bits;  conditional E-value: 0.011
     DUF1644  4 sCpiClehPhnavlllCss 22
                 C iCl+ P +av+  C+ 
  KOO22264.1 57 CCVICLDAPEDAVITNCAH 75
                69**************974 PP

  == domain 2  score: 3.7 bits;  conditional E-value: 0.052
     DUF1644   4 sCpiClehPhnavll 18 
                  Cp+C e+ h a ll
  KOO22264.1  94 PCPVCRETVHRADLL 108
                 588888888888776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (192 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       625  (0.0348597); expected 358.6 (0.02)
Passed bias filter:                      379  (0.0211389); expected 358.6 (0.02)
Passed Vit filter:                        51  (0.00284455); expected 17.9 (0.001)
Passed Fwd filter:                        16  (0.000892409); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              16  [number of targets reported over threshold]
# CPU time: 0.43u 0.27s 00:00:00.70 Elapsed: 00:00:00.43
# Mc/sec: 1335.61
//
Query:       KOO22265.1  [L=581]
Description: lycopene beta cyclase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    8.5e-71  239.0   0.0    1.3e-70  238.4   0.0    1.2  1  Lycopene_cycl   Lycopene cyclase protein
    1.4e-07   31.1   0.0    3.3e-06   26.6   0.0    2.6  3  Pyr_redox_2     Pyridine nucleotide-disulphide oxidoreductase
    7.9e-06   26.0   0.1    5.3e-05   23.4   0.0    2.4  2  NAD_binding_8   NAD(P)-binding Rossmann-like domain
    6.2e-05   22.7   0.2     0.0094   15.6   0.0    2.4  2  DAO             FAD dependent oxidoreductase
    0.00025   20.0   0.0      0.039   12.8   0.0    2.2  2  Trp_halogenase  Tryptophan halogenase
    0.00036   19.9   0.1        0.1   11.8   0.0    2.2  2  Thi4            Thi4 family
    0.00038   19.9   0.6     0.0042   16.5   0.6    2.1  1  FAD_oxidored    FAD dependent oxidoreductase
    0.00041   19.2   0.0    0.00056   18.7   0.0    1.2  1  HI0933_like     HI0933-like protein
    0.00093   18.4   0.0     0.0061   15.7   0.0    2.2  3  FAD_binding_2   FAD binding domain
      0.003   16.7   0.0     0.0044   16.2   0.0    1.2  1  GIDA            Glucose inhibited division protein A
     0.0031   16.8   0.0     0.0057   15.9   0.0    1.4  1  FAD_binding_3   FAD binding domain
  ------ inclusion threshold ------
      0.016   15.1   0.0      0.029   14.2   0.0    1.4  1  3HCDH_N         3-hydroxyacyl-CoA dehydrogenase, NAD binding 
      0.041   14.5   0.0       0.18   12.4   0.0    2.1  2  Pyr_redox       Pyridine nucleotide-disulphide oxidoreductase
       0.14   12.5   0.0       0.39   11.0   0.0    1.7  2  TrkA_N          TrkA-N domain


Domain annotation for each model (and alignments):
>> Lycopene_cycl  Lycopene cyclase protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  238.4   0.0   9.9e-74   1.3e-70       1     356 [.       8     424 ..       8     430 .. 0.87

  Alignments for each domain:
  == domain 1  score: 238.4 bits;  conditional E-value: 9.9e-74
  Lycopene_cycl   1 DvvviGaGpAglslAarlteakpglkvvlieaspsllfpnny.vWsdefedlga......leecvehsWsgtivyl......ddgkkillgraYgr 83 
                    Dv+viG+GpAg  +Aa l  a+ + kv li++ p+ ++pnny +W  e e+l +      l ecv++ W+ t  y+      ++++++ ++r+Y +
     KOO22265.1   8 DVAVIGGGPAGYVMAALL--ARDKHKVALIDPRPQTPWPNNYgSWRAEWEALASklkmpeLLECVNKHWAVTDFYFggsfemPADQRTRVDRPYLQ 101
                    9*****************..99999***************************999*****************9997333333678888899***** PP

  Lycopene_cycl  84 vsskrlkeellerlvengvklleakves....v.......eeeeageslvvle.ggr...kirarlvvdarglaslk.............karrlg 151
                    v+++ lk++l+++ v +gv+l e+ v++    v       +++  g s+ v + gg     ira++vvda+g ++++             k+   g
     KOO22265.1 102 VNRRALKKMLQQKHVAGGVELIEGLVTAnavnVnlfdgdlVHDASGSSVTVSPtGGGepvIIRASVVVDATG-FESRltlrdapesgglwKEIPPG 196
                    ********************998766532222322222223555544444433143347789**********.777679***************** PP

  Lycopene_cycl 152 lQtfyGvevevdnp...pfdldkmvlMDfrveqkl.........kgltFlYalPlds...drllvEeTelaskpe..Lpadalkkrlaaylralgl 230
                    +Q++yG+ v v+     p+  + m l D+r+ + +         + ++F+Y++P+++   + +++EeT+l+ + e  L +  lkkrl ++l+  g+
     KOO22265.1 197 YQIAYGLCVDVEGGalgPYASEAMTLFDYRTDHLAgtelyddgeERPSFVYVMPVGEgpgKEIFFEETSLVGRGErrLEFATLKKRLERRLAFHGI 292
                    ***********975222788899*******999888899999999**********9755589*********8764449****************** PP

  Lycopene_cycl 231 kvk..evveeEqgviPvtlggslprleqkvlaiGaaaglvhPaTGYsvarslaeapllasaiaaalres.......slsarawatlwprerkrqre 317
                    k +  ++  eE ++iP+  gg lp   q+v+++G+aa  vhPaTG+ + r la +  +a+ai+a lr+         ++a a a+lwp  r+ qr 
     KOO22265.1 293 KYDptKILDEEYCYIPM--GGTLPTPTQRVVPFGGAANTVHPATGFQLCRMLASSTEVAEAISAELRRGpdkfdpdAAAAAAHAALWPYGRRLQRD 386
                    985449***********..************************************************889***997778888899*********** PP

  Lycopene_cycl 318 ffrllglalllkldiegrrrfldaFfrlpkellqrFlas 356
                    f  ++g + l +  +e  r f+daFf+l++  + +Fla+
     KOO22265.1 387 FA-IFGGEFLGAQPVEMLRGFFDAFFKLDMVTWGGFLAG 424
                    *9.**********************************86 PP

>> Pyr_redox_2  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.6   0.0   2.6e-09   3.3e-06       1      37 [.       7      45 ..       7     117 .. 0.80
   2 ?    1.3   0.0      0.13   1.6e+02     203     249 ..     139     188 ..      93     193 .. 0.62
   3 ?   -2.2   0.0       1.5   1.9e+03     268     285 ..     503     517 ..     490     533 .. 0.73

  Alignments for each domain:
  == domain 1  score: 26.6 bits;  conditional E-value: 2.6e-09
                 CSEEEE--SHHHHHHHHHHHHHTS-EEEEE..TTHCHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxx RF
  Pyr_redox_2  1 kdvvviGgGpAGlaaaltlaqagakvtlve..legtcln 37
                 +dv+viGgGpAG+ +a  la+ ++kv+l++   ++ ++n
   KOO22265.1  7 FDVAVIGGGPAGYVMAALLARDKHKVALIDprPQTPWPN 45
                 69***************************8554444444 PP

  == domain 2  score: 1.3 bits;  conditional E-value: 0.13
                  SCEEEEEEETTEEEEEEETTSCE...EEESEEEE-S-EEES-HHCS..HCCT CS
                  xxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxx..xxxx RF
  Pyr_redox_2 203 gtsvkeidgngeklevvledgee...idadlvvvavGvrpstelle..eklg 249
                  g  v+++ g +  ++v  + g e   i a+ vv a+G++ + +l++  e+ g
   KOO22265.1 139 GDLVHDASGSS--VTVSPTGGGEpviIRASVVVDATGFESRLTLRDapESGG 188
                  33333333333..4566666666889************99998887766665 PP

  == domain 3  score: -2.2 bits;  conditional E-value: 1.5
                  STTEEE-GGGCTECCSS- CS
                  xxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2 268 vpgiyaiGDvaggkggpe 285
                    ++y+ GDv     ++e
   KOO22265.1 503 ARDVYVTGDVE---AKVE 517
                  679******98...3333 PP

>> NAD_binding_8  NAD(P)-binding Rossmann-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.4   0.0   4.2e-08   5.3e-05       1      30 [.      11      40 ..      11      41 .. 0.95
   2 ?   -1.5   0.0       2.4     3e+03       5      17 ..     562     574 ..     562     579 .. 0.87

  Alignments for each domain:
  == domain 1  score: 23.4 bits;  conditional E-value: 4.2e-08
                   EE--SHHHHHHHHHHHCCTEEEEEE-SSSS CS
  NAD_binding_8  1 IvGaGlsGlvaAylLakagfdvlllekrdr 30
                   ++G+G +G v+A+lLa+++++v l++ r++
     KOO22265.1 11 VIGGGPAGYVMAALLARDKHKVALIDPRPQ 40
                   8*************************9986 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 2.4
                    SHHHHHHHHHHHC CS
  NAD_binding_8   5 GlsGlvaAylLak 17 
                    G+++++aA++L++
     KOO22265.1 562 GFASAAAAAELSE 574
                    8999*****9986 PP

>> DAO  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.0   7.3e-06    0.0094       1      33 [.       8      42 ..       8      78 .. 0.76
   2 ?    4.3   0.1      0.02        26     142     208 ..     101     181 ..      95     197 .. 0.64

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 7.3e-06
                EEEEECTSHHHHHHHHHHHHTT..EEEEESSSSTT CS
         DAO  1 dvviiGGGiiGlstAyeLarrg..Vtllekgdiag 33
                dv++iGGG +G   A  Lar +  V+l++ +++  
  KOO22265.1  8 DVAVIGGGPAGYVMAALLARDKhkVALIDPRPQTP 42
                8*****************998679******96644 PP

  == domain 2  score: 4.3 bits;  conditional E-value: 0.02
                 EEEHHHHHHHHHHHHHHTT-EEEES...ECEEEEEEEE...........TCEEEEEEECTEEE.EEEEE..EEE--GGGHHHH.H CS
         DAO 142 qvdpakltaalaraaealGveileg...tevtgleeed...........gkvwgverttpgen.daada..vVnaaGawsdll.g 208
                 qv+ ++l + l+++  a+Gve++eg   ++++++   +           g  ++v   t g + ++++a  vV a+G  s+l+ +
  KOO22265.1 101 QVNRRALKKMLQQKHVAGGVELIEGlvtANAVNV---NlfdgdlvhdasGSSVTV-SPTGGGEpVIIRAsvVVDATGFESRLTlR 181
                 677777778888889999*******666333333...122222332333333333.333333445778888*******9996633 PP

>> Trp_halogenase  Tryptophan halogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.8   0.0     3e-05     0.039       1      32 [.       8      36 ..       8      42 .. 0.88
   2 !    5.0   0.0    0.0069       8.9     149     214 ..     100     179 ..      83     183 .. 0.71

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 3e-05
                    EEEEE--SHHHHHHHHHHHHHTTTSSEEEEEE CS
  Trp_halogenase  1 kivivGGGtaGwlaAaalakalkgklevtlve 32
                    ++ ++GGG+aG++ Aa+la+     ++v l++
      KOO22265.1  8 DVAVIGGGPAGYVMAALLARDK---HKVALID 36
                    589****************998...7787775 PP

  == domain 2  score: 5.0 bits;  conditional E-value: 0.0069
                     EEE-HHHHHHHHHHHHHHCT-EEEE--EEE....EEE-TTS-EEEEEETT........S-E..EE-SEEEE-SGGG-III CS
  Trp_halogenase 149 yhldaalyakfLrrvaearGvtrvegkvve....vqldedgrveslrled........gre..veadlfiDcsGfrglli 214
                     ++++++ ++k+L++   a Gv+ +eg v+     v+l + + v+    ++        g+   + a  ++D++Gf+++l 
      KOO22265.1 100 LQVNRRALKKMLQQKHVAGGVELIEGLVTAnavnVNLFDGDLVHDASGSSvtvsptggGEPviIRASVVVDATGFESRLT 179
                     68999999999999999999999999886411113443445555544444666777764432268999********9985 PP

>> Thi4  Thi4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.8   0.0     8e-05       0.1      16      48 ..       5      36 ..       1      40 [. 0.91
   2 !    5.8   0.0    0.0053       6.8     153     172 ..     159     178 ..     114     181 .. 0.89

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 8e-05
                TEEEEEEE--SHHHHHHHHHHHHCTTS-EEEEE CS
        Thi4 16 aesDvvivGaGssGLtaayylakkpdlkvaile 48
                 e Dv+++G+G++G   a  la++ + kva+++
  KOO22265.1  5 SEFDVAVIGGGPAGYVMAALLARD-KHKVALID 36
                589********************9.99**9997 PP

  == domain 2  score: 5.8 bits;  conditional E-value: 0.0053
                 B-EEEEEEEEEE--GSSSTT CS
        Thi4 153 DPlvirakvvvdatGhdgei 172
                 +P +ira vvvdatG ++ +
  KOO22265.1 159 EPVIIRASVVVDATGFESRL 178
                 699************99865 PP

>> FAD_oxidored  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.6   3.3e-06    0.0042       1      34 [.       8      41 ..       8     174 .. 0.48

  Alignments for each domain:
  == domain 1  score: 16.5 bits;  conditional E-value: 3.3e-06
  FAD_oxidored  1 DvvVvGGgpaGvaAAiaAaraGakvlLveergvl 34
                  Dv V+GGgpaG++ A   ar   kv+L+++r+  
    KOO22265.1  8 DVAVIGGGPAGYVMAALLARDKHKVALIDPRPQT 41
                  9**********99999999**********99853 PP

>> HI0933_like  HI0933-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.7   0.0   4.4e-07   0.00056       1      33 [.       7      39 ..       7      42 .. 0.90

  Alignments for each domain:
  == domain 1  score: 18.7 bits;  conditional E-value: 4.4e-07
                 -SEEEE--SHHHHHHHHHHHHTT--EEEE-SSS CS
  HI0933_like  1 kdviviGgGaAGlmaAisaakrgkrVlllekak 33
                 +dv+viGgG+AG   A+ +a+ +++V+l++  +
   KOO22265.1  7 FDVAVIGGGPAGYVMAALLARDKHKVALIDPRP 39
                 59**********99999999*********9765 PP

>> FAD_binding_2  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.0   4.8e-06    0.0061       1      33 [.       8      40 ..       8      43 .. 0.92
   2 ?   -1.7   0.0      0.91   1.2e+03     166     202 ..     140     174 ..      87     186 .. 0.66
   3 ?   -1.6   0.0      0.83   1.1e+03     100     151 ..     291     346 ..     277     356 .. 0.73

  Alignments for each domain:
  == domain 1  score: 15.7 bits;  conditional E-value: 4.8e-06
                   SEEEE--SHHHHHHHHHHHHTTT-EEEEESSSG CS
  FAD_binding_2  1 DviViGsGlAGLaAAleaaeaGlkvavvekeqe 33
                   Dv ViG+G AG++ A+ +a+  +kva+++  ++
     KOO22265.1  8 DVAVIGGGPAGYVMAALLARDKHKVALIDPRPQ 40
                   9**************************997665 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 0.91
                    EEEECTTEEEEEEEEETTTTCEEEEEESEEEE----- CS
  FAD_binding_2 166 eLivedgrvtGavvenpesgrevrirakavvlatgGf 202
                    +L++ d   + ++v++  +g+ v ira  vv+atg f
     KOO22265.1 140 DLVH-DASGSSVTVSPTGGGEPVIIRASVVVDATG-F 174
                    4433.445556667755666777777766666665.4 PP

  == domain 3  score: -1.6 bits;  conditional E-value: 0.83
                    T----BCCTS....SB-EEE-TT-SST..EEEE-.STT-......HHHHHHHHHHHHH CS
  FAD_binding_2 100 gvpfsrtedg....pvdvrelGglsat..artlhdaadarretlvtghallarlvesa 151
                    g+++++t       ++   ++Gg+ +t  +r+++  ++a+ ++ +tg++l+  l+ s 
     KOO22265.1 291 GIKYDPT--KildeEYCYIPMGGTLPTptQRVVPFGGAANTVHPATGFQLCRMLASST 346
                    6777773..123458888999999998887888777777669999**99999998876 PP

>> GIDA  Glucose inhibited division protein A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.0   3.4e-06    0.0044       1      30 [.       8      37 ..       8      69 .. 0.89

  Alignments for each domain:
  == domain 1  score: 16.2 bits;  conditional E-value: 3.4e-06
                CEEEE-SSHHHHHHHHHHHHTT--EEEEES CS
        GIDA  1 dviViGgGhAGceAAlaaarlGakvlLith 30
                dv ViGgG AG+  A+ +ar  +kv+Li +
  KOO22265.1  8 DVAVIGGGPAGYVMAALLARDKHKVALIDP 37
                79*************************944 PP

>> FAD_binding_3  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.0   4.5e-06    0.0057       2      33 ..       7      38 ..       6      44 .. 0.86

  Alignments for each domain:
  == domain 1  score: 15.9 bits;  conditional E-value: 4.5e-06
                   EEEEEE--SHHHHHHHHHHHHTTHHEEEEESS CS
  FAD_binding_3  2 tdVlIVGaGpaGlmlallLseaGvrvvlvekr 33
                    dV+++G+GpaG + a lL++   +v l++ r
     KOO22265.1  7 FDVAVIGGGPAGYVMAALLARDKHKVALIDPR 38
                   79******************997778888865 PP

>> 3HCDH_N  3-hydroxyacyl-CoA dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   0.0   2.3e-05     0.029       2      34 ..       9      41 ..       8      74 .. 0.78

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 2.3e-05
                EEEE--SCCHHHHHHHHHHTT-EEEEE-S-HHH CS
     3HCDH_N  2 vaviGaGtmGagiaavfasagleVvlvdiseea 34
                vaviG G  G  +aa++a+ +++V l+d ++++
  KOO22265.1  9 VAVIGGGPAGYVMAALLARDKHKVALIDPRPQT 41
                9***************************98765 PP

>> Pyr_redox  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   0.00014      0.18       2      33 ..       9      40 ..       8      49 .. 0.94
   2 ?   -2.5   0.0       6.1   7.8e+03      41      60 ..     106     125 ..      97     133 .. 0.76

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 0.00014
                EEEECSSHHHHHHHHHHHHTTSEEEEEESSSS CS
   Pyr_redox  2 vvvvGgGyiglElAgalaelgkkVtvversdk 33
                v+v+GgG  g  +A+ la+ ++kV +++ +++
  KOO22265.1  9 VAVIGGGPAGYVMAALLARDKHKVALIDPRPQ 40
                89*************************99886 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 6.1
                 HHHHHHHHHHHHTTEEEECS CS
   Pyr_redox  41 easkilqeklekngievlln 60 
                 ++ k+lq+k+ + g+e++ +
  KOO22265.1 106 ALKKMLQQKHVAGGVELIEG 125
                 46678888888889999876 PP

>> TrkA_N  TrkA-N domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   0.00031      0.39       1      32 [.       9      40 ..       9      42 .. 0.89
   2 ?   -2.5   0.0       4.8   6.1e+03      69      87 ..     508     526 ..     506     542 .. 0.81

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00031
                EEEES-SHHHHHHHHHHHHTTEEEEEEESSHH CS
      TrkA_N  1 iiiiGlGrvGrslaeeLseggkdvvvidkdee 32
                +++iG G  G+ +a  L +++++v +id +++
  KOO22265.1  9 VAVIGGGPAGYVMAALLARDKHKVALIDPRPQ 40
                68*****************6557*****9986 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 4.8
                 -SSSHHHHHHHHHHHHHHT CS
      TrkA_N  69 atgddeanilavllakeln 87 
                 +tgd ea++ a+++++ ++
  KOO22265.1 508 VTGDVEAKVEAAQMLRANR 526
                 7888999999999998654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (581 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       337  (0.0187964); expected 358.6 (0.02)
Passed bias filter:                      296  (0.0165096); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                        14  (0.000780858); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              14  [number of targets reported over threshold]
# CPU time: 0.60u 0.25s 00:00:00.85 Elapsed: 00:00:00.42
# Mc/sec: 4136.80
//
Query:       KOO22266.1  [L=227]
Description: hypothetical protein Ctob_003990 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.12   11.9   0.0       0.23   11.0   0.0    1.4  1  PsaD      PsaD


Domain annotation for each model (and alignments):
>> PsaD  PsaD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   1.3e-05      0.23      55      91 ..     124     161 ..     117     171 .. 0.87

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 1.3e-05
                 EESSHHHHHHHHH.HTGGG...T----EEEEE-TT--E CS
        PsaD  55 klarkeqclalgt.qlrtkfklkiedykiyrvfpnGev 91 
                  la+k ++ a+++  +  kf++   dykiyr ++ Ge 
  KOO22266.1 124 VLAKKVRSTAIAAmVFDPKFHMDAADYKIYRKYAVGEG 161
                 589999999999857899****************9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (227 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       303  (0.0169); expected 358.6 (0.02)
Passed bias filter:                      281  (0.0156729); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.24s 00:00:00.62 Elapsed: 00:00:00.38
# Mc/sec: 1794.75
//
Query:       KOO22267.1  [L=150]
Description: hypothetical protein Ctob_003993, partial [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (150 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       309  (0.0172346); expected 358.6 (0.02)
Passed bias filter:                      223  (0.0124379); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.24s 00:00:00.57 Elapsed: 00:00:00.37
# Mc/sec: 1222.77
//
Query:       KOO22268.1  [L=461]
Description: 2-oxoisovalerate dehydrogenase subunit mitochondrial-like protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    6.3e-77  258.5   0.0    7.9e-77  258.1   0.0    1.1  1  E1_dh         Dehydrogenase E1 component
    0.00067   19.5   0.0     0.0027   17.5   0.0    2.0  1  TPP_enzyme_C  Thiamine pyrophosphate enzyme, C-terminal TPP b
  ------ inclusion threshold ------
      0.048   13.9   3.9      0.091   13.1   3.9    1.4  1  Mto2_bdg      Micro-tubular organiser Mto1 C-term Mto2-bindin


Domain annotation for each model (and alignments):
>> E1_dh  Dehydrogenase E1 component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  258.1   0.0   1.3e-80   7.9e-77       2     298 ..     115     419 ..     114     421 .. 0.95

  Alignments for each domain:
  == domain 1  score: 258.1 bits;  conditional E-value: 1.3e-80
                 HHHHHHHHHHHHHHHHHTTSS-S-----TT-HHHHHHHHHTS-TTSEEEESS--HHHHHHTT--HHHHHHHHTT-TTTSSGTT-..-E..BTT..BEEE CS
       E1_dh   2 klvllrrvedaldalykrkkrigfyhlsagqealkvgiaaalekeDliiteYReagvllarglsleeilaeltgkvkgkggsrh.elmyaekesrilgg 99 
                 +++l ++ +d++  +++r++ri+fy +  g+e + vg+aaal+++D+++++YRe gv+++rg + +e+  +l   +++   +r+ +l++++ke+ il  
  KOO22268.1 115 HTMLRVNEFDKIFLDAQRQGRISFYLTGRGEEGATVGSAAALQPDDWVLPQYRELGVFFWRGFTFQEVANQLCATAHDPAHGRQlPLHIGSKERCILYV 213
                 56777888999**************************************************************************************** PP

                 -SSTTTHHHHHHHHHHHHHHHTS---EEEEEEGGGTT-HHHHHHHHHHHHTT--EEEEEEEESEETTEEHHHH-S---GGG..TTTTS-EEEEETTSHH CS
       E1_dh 100 ngivgaqvplvaGialaakiegkkevailliGDgAanqGdvyealnlaalwklpvifvveNNkygisTeaekasaskeladrargvgipglrVdgnDpl 198
                 ++++++q+p++ G+al +k   + +++i+++G+g a++Gd+  aln+aa+++ p+if+++NN+y+isT+a+ +++s+ +a r+ ++g p +r+dgnD l
  KOO22268.1 214 KSTLATQAPHATGVALHMKRTRQPRISIAYFGEGTASHGDIPSALNIAAVHGSPMIFFCRNNGYAISTNAKDQYRSDGIAPRGPAFGLPTIRIDGNDLL 312
                 *************************************************************************************************** PP

                 HHHHHHHHHHHHHHTTT--EEEEEEE--SS-SSTTSHSHSSSHHHH.......HHHHHHHH-HHHHHHHHHHHTTSS-HHHHHHHHHHHHHHHHHHHHH CS
       E1_dh 199 avyeAvkfAaeraregkgpllielvtYRyggHsesDdpstyrtree.......veevrkkkdpiqrlkelLvkkgvvseeelkeiekevrkeveeavkk 290
                 av +A+k A++ + ++ +p lie++tYR+g Hs+sDd+++yrtr+          ++++ + pi r+ ++L ++g+++ + ++ ++ ++r +    ++ 
  KOO22268.1 313 AVVAATKKARDICLNEGRPCLIEAMTYRIGAHSTSDDDTKYRTRDApiegwdsERAFWEARSPIIRFGRYLASRGWWNTQMEDYLRTQARRDAIASLNV 411
                 *******************************************974322221156788999*****************************999999999 PP

                 HHHS---- CS
       E1_dh 291 aeskkele 298
                 a +++ ++
  KOO22268.1 412 ASQAPRPA 419
                 99998775 PP

>> TPP_enzyme_C  Thiamine pyrophosphate enzyme, C-terminal TPP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5   0.0   4.5e-07    0.0027      25      91 ..     212     284 ..     193     336 .. 0.73

  Alignments for each domain:
  == domain 1  score: 17.5 bits;  conditional E-value: 4.5e-07
                   TTTS-TTTHHHHHHHHHH....HSTTSEEEEEEEHHHHHHT..GGGHHHHHHTT-SEEEEEEE-SBCCCHHHH CS
  TPP_enzyme_C  25 gglgtmGyglpaAiGakl....akpdrevvaivGDGgflmi..lqelatavrrnlpitvvvlnNegygmtggq 91 
                   ++ +t+  + p A+G++l     ++ r  +a+ G G+  +    ++l  a+ ++ p+++++ nN++   t+ +
    KOO22268.1 212 YVKSTLATQAPHATGVALhmkrTRQPRISIAYFGEGTASHGdiPSALNIAAVHGSPMIFFCRNNGYAISTNAK 284
                   466899999*********7654344579*********877663699999999999********9988666655 PP

>> Mto2_bdg  Micro-tubular organiser Mto1 C-term Mto2-binding region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   3.9   1.5e-05     0.091      19      50 ..      15      46 ..       4      48 .. 0.85

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 1.5e-05
    Mto2_bdg 19 aRlldrsgarerLeelkaeNrlLkaeLerdrs 50
                aR   rs +++rL++l+ eN++L+ e++r+r+
  KOO22268.1 15 ARAPRRSLCTARLSDLELENARLREEIARLRQ 46
                66667888*********************996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (461 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       397  (0.0221429); expected 358.6 (0.02)
Passed bias filter:                      363  (0.0202465); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.51u 0.27s 00:00:00.78 Elapsed: 00:00:00.44
# Mc/sec: 3173.99
//
Query:       KOO22269.1  [L=1506]
Description: threonyl-tRNA synthetase, partial [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.5e-40  138.4   0.0    4.1e-40  137.7   0.0    1.3  1  tRNA-synt_2b    tRNA synthetase class II core domain (G, H, P
    4.2e-11   42.8   0.0      1e-10   41.6   0.0    1.6  1  HGTP_anticodon  Anticodon binding domain
    8.1e-10   38.6   0.0    1.6e-09   37.7   0.0    1.5  1  tRNA_SAD        Threonyl and Alanyl tRNA synthetase second ad
     0.0024   17.3   0.0     0.0041   16.5   0.0    1.2  1  Glyco_hydro_42  Beta-galactosidase
  ------ inclusion threshold ------
      0.011   15.6   0.8      0.025   14.5   0.8    1.5  1  CCER1           Coiled-coil domain-containing glutamate-rich 


Domain annotation for each model (and alignments):
>> tRNA-synt_2b  tRNA synthetase class II core domain (G, H, P, S and T)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  137.7   0.0   1.1e-43   4.1e-40       5     178 ..    1186    1393 ..    1183    1394 .. 0.96

  Alignments for each domain:
  == domain 1  score: 137.7 bits;  conditional E-value: 1.1e-43
                    ETTSEEEEE-SSSHHHHHHHHHHHEEEBGG.SSEEEEEEEEEEBTTTS.TBCTTTB-SEEEEEEEEEEESGGGHHHHHHHHHHHHHHHHHHTT.S CS
                    xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  tRNA-synt_2b    5 drndreyiLkPtneetfvelirdevlrskr.LPlklyqiqtkyRdEks.dsrGLlRvreFhqkdgyvfhaeaslddslrdlikaisriferlgle 97  
                    + ++ ey ++P+n++ +v +++d   rs+r LPl+ ++++t+yR+E+s  ++GL+Rvr+F+q+d+++f+++++l d++  ++ ++++i++++g+ 
    KOO22269.1 1186 QVEGAEYQIRPMNCPFHVLVYKDS-PRSYRdLPLRWAELGTVYRYERSgTLHGLFRVRGFTQDDAHIFCLPEQLSDEILGVLDLTETILSKFGFT 1279
                    556889******************.***777****************99999******************************************* PP

                    CEEEEEEGTTSC.................................BTTSEEEEEEEEETTTSEEEEEEEEEEEETHHHHHTTEEEECTTSSEEEE CS
                    xxxxxxxxxxxx.................................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  tRNA-synt_2b   98 fraiielmsaks.................................adykdkkefeavsesltkgieigtiqklgtrlserlgatvldennreksv 159 
                     ++++++++ ++                                 a+y++k ++++ +  +++ ++++tiq + ++l++r+g++++ + ++++++
    KOO22269.1 1280 DYKVMLSTRPEKsvgsdaiwdkattaltdaldrkgwtydvdegggAFYGPKIDVKIRDA-IGRMWQCSTIQCD-FNLPDRFGLEYIASSGKVEQP 1372
                    *******888778999****************************************999.***********99.********************* PP

                    EEEEEE.EE.HHHHHHHHHHH CS
                    xxxxxx.xx.xxxxxxxxxxx RF
  tRNA-synt_2b  160 imicaa.ig.veRllsaileq 178 
                    im+++a +g +eR+ ++++e+
    KOO22269.1 1373 IMVHRAiFGsMERFFGVLTES 1393
                    ******99*********9986 PP

>> HGTP_anticodon  Anticodon binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.6   0.0   2.8e-14     1e-10       2      88 ..    1407    1490 ..    1406    1494 .. 0.93

  Alignments for each domain:
  == domain 1  score: 41.6 bits;  conditional E-value: 2.8e-14
                      EEEEESSSSHHHHHHHHHHHHHHHHTTTSEEEEESSSSTHHHHHHHHHHTT-SEEEEE-HHHHHHTEEEEEETTTCEEEEEETTHHH CS
  HGTP_anticodon    2 vvviplnekaeeleeyakklaeeLraagirvelddsnesigkkireadllgipfavvvGekelekgtvtvrdrdtreqervsldelv 88  
                        ++p+++   ++++y++++ ++ ++ag+r+e+d  ++s+gk+i+ +++ +ip+  vvG+ e+e +++++ +r  ++  +++l+ ++
      KOO22269.1 1407 LRLLPVSD---DFKPYCEEVVKACKRAGVRAEVDIGGRSLGKQIKISNQEKIPMYAVVGAAEVEGRSLALTSRRGGDLGSLPLAVAI 1490
                      56899**9...9***************************************************99*********9999888877665 PP

>> tRNA_SAD  Threonyl and Alanyl tRNA synthetase second additional domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.7   0.0   4.5e-13   1.6e-09       1      44 []    1025    1082 ..    1025    1082 .. 0.96

  Alignments for each domain:
  == domain 1  score: 37.7 bits;  conditional E-value: 4.5e-13
                  EEEEEETT......EEEEESS---SBGGGC-SEEEE.........CCECCCTCEEEEE CS
    tRNA_SAD    1 vrvvsiGd.....isvelCgGtHvpnTgeIgafkil.........seesiakglrRIy 44  
                  +++++iGd      +++lC G+Hv +Tg++ a +i          ++++ +++l+RIy
  KOO22269.1 1025 ITIYHIGDensktKWWDLCAGPHVAHTGMLPADAISldsiagaywRGDETKPMLQRIY 1082
                  69*****9999999****************99999999*******************9 PP

>> Glyco_hydro_42  Beta-galactosidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.0   1.1e-06    0.0041      33      69 ..     125     161 ..     111     195 .. 0.85

  Alignments for each domain:
  == domain 1  score: 16.5 bits;  conditional E-value: 1.1e-06
                     -HHHH-SBTTB---HHHHHHHHHHHCTT-EEEEE-ST CS
  Glyco_hydro_42  33 aWaklePeegkydFewLdevldllekagikviLatpt 69 
                      W +leP+eg+y+F+ L   ++ ++++g kv+L+  t
      KOO22269.1 125 TWLQLEPTEGTYNFAPLHANVAEAARRGWKVCLRILT 161
                     6*******************************98554 PP

>> CCER1  Coiled-coil domain-containing glutamate-rich protein family 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.5   0.8   6.9e-06     0.025      97     130 ..     765     798 ..     747     825 .. 0.74

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 6.9e-06
       CCER1  97 pspvqvirvyglhplclcccscwsgswnpgwarp 130
                 p    ++ + gl plclccc   ++ +n   +r+
  KOO22269.1 765 PQLLGLLGLLGLIPLCLCCCVYRCMYCNAELERT 798
                 333346778899*************999988775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1506 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       503  (0.0280551); expected 358.6 (0.02)
Passed bias filter:                      322  (0.0179597); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.82u 0.29s 00:00:01.10 Elapsed: 00:00:00.45
# Mc/sec: 10103.50
//
Query:       KOO22270.1  [L=144]
Description: hypothetical protein Ctob_003988 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (144 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       440  (0.0245412); expected 358.6 (0.02)
Passed bias filter:                      234  (0.0130515); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.26s 00:00:00.64 Elapsed: 00:00:00.40
# Mc/sec: 1074.58
//
Query:       KOO22271.1  [L=425]
Description: polynucleotide kinase polynucleotide ligase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    4.2e-12   46.4   0.0    4.7e-11   43.0   0.0    2.1  1  RNA_lig_T4_1  RNA ligase


Domain annotation for each model (and alignments):
>> RNA_lig_T4_1  RNA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.0   0.0   2.6e-15   4.7e-11       1     220 []      72     273 ..      72     273 .. 0.79

  Alignments for each domain:
  == domain 1  score: 43.0 bits;  conditional E-value: 2.6e-15
  RNA_lig_T4_1   1 eaRGLfteenkeerIvvRgydKFFNinEveetkweeieqktqgpyelteKenGclilisalsdgklvvaSkhsl.........eaeshaevgerlle 88 
                   e+RGL++e+n+ +r+v++ + KFFN +E + +  +e  ++  +  +++eK +G+l +++  + g + vaS             +  ++a ++ + ++
    KOO22271.1  72 ECRGLLLEKNT-WRVVMMPFSKFFNADEPNAKATREAFDW--STARVYEKLDGSLTTLY-WYGGCWHVASMRLPaadgevpgsSGGTFACIFWKAFA 164
                   7**********.9****************99998888887..7899*************.***********99977777666555555555554444 PP

  RNA_lig_T4_1  89 kklekegkteeeLaeelleknlTavfElcddsfeehivaypeekagLyLhglnentpefstesseevakfakefg.fiktklitlesleevkkflee 184
                        +g    +L      ++ + +fElc +   + iv  + + a L L+g +    ++++ ++ +v+++  e+g + + +l    sl++v+  + +
    KOO22271.1 165 A----AGF---SLPIAPAAQQRCFMFELCLP--GHTIVVRH-ATASLSLIGAR----DLVRLEELDVEAVGAEYGwTTPARLPAPVSLAAVQAAARA 247
                   3....333...566667788899999***99..56666665.99999999999....7778888889999999997667777777777777777776 PP

  RNA_lig_T4_1 185 vaetgswegeeiEGfVvrckskkdffFklKfkepyy 220
                   ++  ++      EG+V  +      f +lK+k+p y
    KOO22271.1 248 LNPVEH------EGYVAVDGC----FRRLKVKSPSY 273
                   666666......999988844....55788888877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (425 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       474  (0.0264376); expected 358.6 (0.02)
Passed bias filter:                      398  (0.0221987); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.27s 00:00:00.76 Elapsed: 00:00:00.43
# Mc/sec: 3000.86
//
Query:       KOO22272.1  [L=122]
Description: chromatin remodeling complex subunit [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.4e-09   36.4   0.0      1e-08   35.5   0.0    1.4  1  Helicase_C  Helicase conserved C-terminal domain


Domain annotation for each model (and alignments):
>> Helicase_C  Helicase conserved C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.5   0.0   5.6e-13     1e-08      50     111 .]       1      64 [.       1      64 [. 0.93

  Alignments for each domain:
  == domain 1  score: 35.5 bits;  conditional E-value: 5.6e-13
                 STHHHHHHHHHHHH.TTSSS.EEEESGGGTSSSTSTTESEEEESSSSSSHHHHHHHHTTSSSTT CS
  Helicase_C  50 lpqnereeileqfn.kgesd.vLiatdvaerGidipkvnlVinfdlprnvtsyiqriGRtgRag 111
                 + q  r ++le+f  + +++ +L++ ++++ G+++  +++V  +d+++n+    q+i+R++R+g
  KOO22272.1   1 MAQPARAKALERFAsEPSVRvLLLSLRAGGVGLNLVAAQTVYLLDPWWNPGVEEQAIDRVHRIG 64 
                 67889********9667788788***************************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (122 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       403  (0.0224776); expected 358.6 (0.02)
Passed bias filter:                      341  (0.0190195); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.24s 00:00:00.62 Elapsed: 00:00:00.40
# Mc/sec: 923.82
//
Query:       KOO22273.1  [L=261]
Description: derlin-2 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.5e-24   86.3   6.5    2.9e-24   86.1   6.5    1.0  1  DER1      Der1-like family
  ------ inclusion threshold ------
      0.074   13.3   0.1       0.19   12.0   0.0    1.6  2  IL4_i_Ig  Interleukin-4 inducing immunoglobulin-binding domai


Domain annotation for each model (and alignments):
>> DER1  Der1-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   86.1   6.5   3.3e-28   2.9e-24       2     175 ..      11     187 ..      10     213 .. 0.92

  Alignments for each domain:
  == domain 1  score: 86.1 bits;  conditional E-value: 3.3e-28
        DER1   2 PavTRllltatvvltllgrlelispaklvlsyelvvkkvQiwRlltsllyf..sstgfsflinlyfiyqysskLEegsfrgrsadyvylllflavlitl 98 
                 P++TR ++ ++v++++l + +++++  +++s  +v+++  +wRll +++y+  +  ++ f ++l  + + ++ LE  ++r ++ d++ +++ +a ++ l
  KOO22273.1  11 PPITRSWVSLSVLMAVLSSSKVLDLRSVCFSERAVMQHGEWWRLLVNFFYMgdAVKSVFFWFQLHHFWECLKVLELVKYRWEPGDFIKMIVCNACFLLL 109
                 9**************************************************555567778899***************************999888777 PP

        DER1  99 lglla.dlvvLgqalilaivYvwskknkdvqvsFfgvlrvkakylPlvllafsfllgesvvvsligilvghiyyfled 175
                 l   +  +++Lg+++++a vY++s++ +   ++ +g ++++  +lP+ +++  +l  +++  +l+g+++gh y++l++
  KOO22273.1 110 LKQFFpAMIFLGSPMVMAFVYMYSREYEVQVMNLLGFFQIRCGWLPFAQMLQDLLQAGDIGPNLLGLVSGHTYFYLME 187
                 77744569*******************99999*******************************************975 PP

>> IL4_i_Ig  Interleukin-4 inducing immunoglobulin-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   2.1e-05      0.19      13      61 ..      16      64 ..       4      67 .. 0.85
   2 ?   -3.1   0.0         1   9.3e+03       3      21 ..      85     103 ..      83     112 .. 0.73

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 2.1e-05
                -EEEE-S-BS--SS..-B--SEEE----------EEEEEESSSTT-SSE CS
    IL4_i_Ig 13 swsdicdsnellspllvwttrsvCapenqdskreryWllyeqpeftGry 61
                sw+ +     +ls+  v+  rsvC +e   +++ ++W+l  +  ++G  
  KOO22273.1 16 SWVSLSVLMAVLSSSKVLDLRSVCFSERAVMQHGEWWRLLVNFFYMGDA 64
                67777777889*****************************999999975 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 1
                 EEESSGGG-S-EEEE-S-B CS
    IL4_i_Ig   3 rlYseanerGswsdicdsn 21 
                  l + ++e G+++ ++  n
  KOO22273.1  85 ELVKYRWEPGDFIKMIVCN 103
                 5667788999998876554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (261 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       592  (0.0330191); expected 358.6 (0.02)
Passed bias filter:                      396  (0.0220871); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.41u 0.21s 00:00:00.62 Elapsed: 00:00:00.36
# Mc/sec: 2160.01
//
Query:       KOO22274.1  [L=149]
Description: hypothetical protein Ctob_005029 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (149 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       211  (0.0117686); expected 358.6 (0.02)
Passed bias filter:                      173  (0.00964917); expected 358.6 (0.02)
Passed Vit filter:                        12  (0.000669307); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.21s 00:00:00.56 Elapsed: 00:00:00.36
# Mc/sec: 1246.95
//
Query:       KOO22275.1  [L=213]
Description: hypothetical protein Ctob_005028 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.5e-35  120.4   0.1    7.5e-35  120.0   0.1    1.1  1  DUF3119   Protein of unknown function (DUF3119)


Domain annotation for each model (and alignments):
>> DUF3119  Protein of unknown function (DUF3119)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  120.0   0.1   4.2e-39   7.5e-35       1     121 [.      51     205 ..      51     208 .. 0.95

  Alignments for each domain:
  == domain 1  score: 120.0 bits;  conditional E-value: 4.2e-39
     DUF3119   1 velepsyrlplvllllglallllqlvlgllvallglfllvQtvrlrlqfteealevvrv...........dsgenvirGgenrfpydsfvnweiffpsv 88 
                 v+++ +yr+++ ++++gla+l++ +++g ++++lg+fl++Qt+r+r++f+ ea+ev++             +gen  +Ggenr++ +s+vnwe+ fps 
  KOO22275.1  51 VVVKEDYRVAASFAVTGLAILFAPTLVGGFLTVLGMFLVFQTFRIRFVFDGEAIEVKTKplgnlfstdlgATGENFAVGGENRWALSSVVNWEF-FPSE 148
                 6899*******************99********************************************99***********************.6655 PP

     DUF3119  89 ..PiLvYFketqskp.......................eGqiHflPilfdakqLkeel 121
                   PiLvYFke+q+ p                       +Gq+Hf+P ++da+++k+ +
  KOO22275.1 149 qlPILVYFKEIQT-PadkwdvgpgkwangnealqkgavKGQVHFFPCIADAQAIKAGF 205
                 57***********.4489**********************************999877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (213 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       352  (0.019633); expected 358.6 (0.02)
Passed bias filter:                      241  (0.0134419); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.25s 00:00:00.61 Elapsed: 00:00:00.38
# Mc/sec: 1672.90
//
Query:       KOO22276.1  [L=312]
Description: mitochondrial uncoupling protein 4 isoform 1 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.9e-58  194.4   1.1    1.6e-18   66.4   0.0    3.0  3  Mito_carr        Mitochondrial carrier protein
  ------ inclusion threshold ------
      0.029   13.5   0.1       0.58    9.3   0.0    2.6  3  Serine_protease  Gammaproteobacterial serine protease


Domain annotation for each model (and alignments):
>> Mito_carr  Mitochondrial carrier protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.1   0.3   1.6e-20   1.5e-16       5      94 ..      17     106 ..      14     109 .. 0.93
   2 !   66.4   0.0   1.8e-22   1.6e-18       3      93 ..     114     209 ..     112     211 .. 0.90
   3 !   65.1   0.0   4.4e-22     4e-18       5      90 ..     217     303 ..     214     307 .. 0.93

  Alignments for each domain:
  == domain 1  score: 60.1 bits;  conditional E-value: 1.6e-20
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSTTTSCSSHHHHHHHHHHHHHHHGGGTTHHHHHHHHHHHHHHHHHHHHHHHHHHC CS
   Mito_carr   5 vlkellaGglagavatlvttPldvvKtrlqtqkksskksksaaildvlkkiykeeGlrglyrGllpnllrvapasalkfvlyetlkrlll 94 
                 ++k+++  g++ ++a  +t+P+d+ Ktrlq+q++   + ++ ++  ++ +i+k+eG+ gly G++p++ r +p+++ +   ye+++ ++ 
  KOO22276.1  17 IAKKFCLTGASSMLAEGATFPIDITKTRLQLQGQADFTGTKFGFGGMMANILKTEGVVGLYAGVTPAIARHIPYTGFRAIGYEYIRAFFC 106
                 7899999***************************987766667*******************************************9986 PP

  == domain 2  score: 66.4 bits;  conditional E-value: 1.8e-22
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSTTTSCSS.....HHHHHHHHHHHHHHHGGGTTHHHHHHHHHHHHHHHHHHHHHHHHHH CS
   Mito_carr   3 lsvlkellaGglagavatlvttPldvvKtrlqtqkksskksksaa.....ildvlkkiykeeGlrglyrGllpnllrvapasalkfvlyetlkrll 93 
                  ++l++++aG+ aga+++ ++ P d++K+r+q++++  +++k ++     ++d++ ki   eG+ g+y G++p++ r a  +   +++y+t k+ +
  KOO22276.1 114 APLLAKMAAGMSAGAIGQAIAVPCDLIKVRMQSDGRLVAAKKLDKprytgLFDAFAKIQAAEGIGGFYAGCWPAIQRAALVNLGELTTYDTAKKAI 209
                 678999***************************66666666655566666*******************************************986 PP

  == domain 3  score: 65.1 bits;  conditional E-value: 4.4e-22
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSTTTSCSS.HHHHHHHHHHHHHHHGGGTTHHHHHHHHHHHHHHHHHHHHHHH CS
   Mito_carr   5 vlkellaGglagavatlvttPldvvKtrlqtqkksskksksaa.ildvlkkiykeeGlrglyrGllpnllrvapasalkfvlyetlk 90 
                 +l +l ++ ++g va+l+ tP dv+K r+++q k    +  ++ +ld+ kk++ +eG ++ly+G++p +lr  p + + +v+ye+l+
  KOO22276.1 217 LLCHLSSAICSGFVASLCSTPADVAKSRIMSQTKLPDGTFPYNgTLDCWKKVVASEGPMALYKGFIPGWLRLGPWQLVFWVSYEQLR 303
                 5678999***************************9988776667****************************************997 PP

>> Serine_protease  Gammaproteobacterial serine protease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.3   0.0     0.053   4.7e+02      10      60 ..      24      85 ..      18      88 .. 0.64
   2 ?   -0.2   0.0     0.048   4.3e+02     173     196 ..     116     139 ..     106     157 .. 0.71
   3 ?    9.3   0.0   6.5e-05      0.58     140     213 ..     183     257 ..     179     273 .. 0.83

  Alignments for each domain:
  == domain 1  score: -0.3 bits;  conditional E-value: 0.053
  Serine_protease 10 tavisfsvsaltsPfkalLtnlqkdg..svlpsaysgG..........lfralYrGflayala 60
                     t++ s+     t P+ ++ t+lq +g   ++ +++  G           + +lY+G+++ a+a
       KOO22276.1 24 TGASSMLAEGATFPIDITKTRLQLQGqaDFTGTKFGFGgmmanilkteGVVGLYAGVTP-AIA 85
                     66666677778888888888888887323444445333566664443335578888888.765 PP

  == domain 2  score: -0.2 bits;  conditional E-value: 0.048
  Serine_protease 173 lynkllaGalsGviAtvlttifns 196
                      l +k++aG+ +G+i   ++ +  +
       KOO22276.1 116 LLAKMAAGMSAGAIGQAIAVPCDL 139
                      567889999999988888777654 PP

  == domain 3  score: 9.3 bits;  conditional E-value: 6.5e-05
  Serine_protease 140 ggfgsrslaGfvnFaalgvvedeiakflkin.delynkllaGalsGviAtvlttifnsykDkkllaskvengrll 213
                      g + +   a +vn   l+  +       +i  d+l  +l +   sG +A++++t+    k + + ++k+ +g   
       KOO22276.1 183 GCWPAIQRAALVNLGELTTYDTAKKAIVPITgDNLLCHLSSAICSGFVASLCSTPADVAKSRIMSQTKLPDGTFP 257
                      5677777888899999998888888889997366778999999*************************9999765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (312 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       291  (0.0162307); expected 358.6 (0.02)
Passed bias filter:                      263  (0.014669); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.43u 0.23s 00:00:00.66 Elapsed: 00:00:00.38
# Mc/sec: 2434.59
//
Query:       KOO22277.1  [L=343]
Description: udp-glucose 4-epimerase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.6e-60  205.3   0.0    1.8e-60  205.1   0.0    1.0  1  GDP_Man_Dehyd    GDP-mannose 4,6 dehydratase
    5.9e-52  176.5   0.0    7.1e-52  176.3   0.0    1.1  1  Epimerase        NAD dependent epimerase/dehydratase family
    5.6e-14   51.8   0.0    9.8e-14   51.0   0.0    1.3  1  3Beta_HSD        3-beta hydroxysteroid dehydrogenase/isomeras
    1.2e-11   44.3   0.0    8.3e-11   41.6   0.0    2.2  2  Polysacc_synt_2  Polysaccharide biosynthesis protein
    3.7e-09   36.1   0.0    5.4e-09   35.5   0.0    1.2  1  RmlD_sub_bind    RmlD substrate binding domain
    1.2e-05   25.3   0.0    1.7e-05   24.8   0.0    1.2  1  NAD_binding_10   NAD(P)H-binding
    2.5e-05   23.8   0.1    4.4e-05   23.0   0.1    1.4  1  adh_short        short chain dehydrogenase
      4e-05   22.9   0.0     0.0051   16.0   0.0    2.4  1  NAD_binding_4    Male sterility protein
    0.00019   21.4   0.1    0.00056   19.9   0.1    1.7  1  KR               KR domain
     0.0019   18.1   0.1     0.0044   16.9   0.1    1.5  2  3HCDH_N          3-hydroxyacyl-CoA dehydrogenase, NAD binding
     0.0094   15.5   0.1      0.042   13.4   0.0    1.9  2  NmrA             NmrA-like family
  ------ inclusion threshold ------
       0.14   12.3   0.1       0.28   11.3   0.1    1.4  1  NAD_binding_2    NAD binding domain of 6-phosphogluconate deh


Domain annotation for each model (and alignments):
>> GDP_Man_Dehyd  GDP-mannose 4,6 dehydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  205.1   0.0   1.2e-63   1.8e-60       1     331 [.       4     323 ..       4     324 .. 0.83

  Alignments for each domain:
  == domain 1  score: 205.1 bits;  conditional E-value: 1.2e-63
                    EEETTTSHHHHHHHHHHHHCT-CCEEEEEEESS-TTHHHHHCTTT...TTGCCEEEEE--TT-HHHHHHHHHHHT-SEEEE--S---HHHHTTSHH CS
  GDP_Man_Dehyd   1 LiTGiaGfiGsylaelLlekgyevhgivrrsssfntgriehlakdpkeeleenlklhkgDltDssslerllaevqpdevynLAAqshVdvsfekPe 96 
                    L TG+aG+iGs++a  +le g+ev ++++  ++ + + +++++k       +++klhk Dl D+  +e l+a++++d+v+++A+ ++V++s+ kP 
     KOO22277.1   4 LLTGGAGYIGSHTALEILEAGHEVEVMDNMYNA-SEEALNRVMKLS----GKEIKLHKIDLLDAPGMEVLFASTKFDAVIHFAGLKAVGESVAKPL 94 
                    78**********************998875433.445555555432....4579****************************************** PP

                    HHHHHHTHHHHHHHHHHHHCT..TTSEEEEEEEGGGG-S-SSSSB-TTS-----SHHHHHHHHHHHHHHHHHHHH---.EEEEEE-E....EESTT CS
  GDP_Man_Dehyd  97 ytaevnvlGtlrLLeairalglekkvrfyqaStsEvYGkvqevpqtEttpfyPrsPYaaaKlyadwivvnyreayglf.avngilfn....hespr 187
                     ++e+n++Gt++LL+a+ a g++    ++++S+++vYG++++vp+tE+ p+++++PY+ +Kl+ ++i ++ +e+ + + ++  ++fn    h+s  
     KOO22277.1  95 FYYENNITGTVNLLKAMGAGGCK---NIVFSSSATVYGDPASVPVTEDFPTSATNPYGRTKLFIEYILKDVYESDKSWnVILLRYFNpvgaHKSGQ 187
                    *****************998875...6899****************************************9999887527779****999988888 PP

                    S-TT..SCCCHHHHHHHHHHTTS-C-EE.CTTTT-EEEEEEHHHHHHHHHHHHHCSS---EEE-TT-EEECHHCHHCCHHCCCHHHHHH....... CS
  GDP_Man_Dehyd 188 rget..fvtrkitravarialgkqevly.lGnldakRdwghvkDyveamwlmlqqdkpedyviatgethsvrefvelaflelgktiewegkgeee. 279
                     ge+   + ++++++++++a+gk++ l+ +G  ++++d + v+Dy+++++l   ++    ++ a +++ +  +++   +l +g+     g+++ e 
     KOO22277.1 188 IGENpkGIPNNLMPYIQQVAVGKRPHLTvYGSDYPTKDGTGVRDYIHVVDL--AKG----HLAALKKVETNPGCA-TYNLGTGN-----GNSVLEm 271
                    888555899**************9876626********************8..333....345555554444444.44444443.....3334331 PP

                    .......TTGGCCCEECGG--SS--SB--B-THHHHHHH----SS-HHHHHHH CS
  GDP_Man_Dehyd 280 .vgrakesgkvvvevdpkyfrpgevdlllgdaskakeeLgWkpkvsfeelvre 331
                      +  k+ gk+  +  ++ +rpg+v  ++g ++ka+ eLgWk++ ++e+++++
     KOO22277.1 272 lAAYSKACGKE-LKHVMADRRPGDVAVCYGLPKKAEVELGWKAELNLEDMCAD 323
                    13345677775.5666899*******************************986 PP

>> Epimerase  NAD dependent epimerase/dehydratase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  176.3   0.0   4.7e-55   7.1e-52       1     241 []       3     261 ..       3     261 .. 0.97

  Alignments for each domain:
  == domain 1  score: 176.3 bits;  conditional E-value: 4.7e-55
                 EEEETTTSHHHHHHHHHHHHCTSEEEEEES-STTTTCHHCHHC.......EEEE--TT-HHHHHHHHHHHT-SEEEE--S---HHHHHHSHHHHHHHHT CS
   Epimerase   1 ilVtGatGfiGsalvkallekgyevigldrlssasntarledl.......elveldltdrsalerlfkeeqpdavihlAavggvaassedpadfieknl 92 
                 +l+tG++G+iGs+++ ++le+g+ev ++d+  +as++a+++         +l+++dl+d+  +e lf+++++davih+A+ + v++s+ +p  ++e+n+
  KOO22277.1   3 VLLTGGAGYIGSHTALEILEAGHEVEVMDNMYNASEEALNRVMklsgkeiKLHKIDLLDAPGMEVLFASTKFDAVIHFAGLKAVGESVAKPLFYYENNI 101
                 699****************************999999998888******************************************************** PP

                 HHHHHHHHHHHHHTCTEEEEEEEGGGGTSCSSSSBSTCSTTS----SSHHHHHHHHHHHHHHHHHHHH.T-EEEEEEESEEESTT.......S-TTSTT CS
   Epimerase  93 qgtlnlleaarkagvkrllflsSsevYGkdaeqpkeettltgplkpnspYaaaKlageklveayaaqy.glnaiilrlfnlyGpr.......ngegevs 183
                  gt+nll+a+ + g+k+++f sS++vYG++a++p +e+    p+  ++pY+++Kl +e +++++ ++   +n+i lr+fn +G++       n++g ++
  KOO22277.1 102 TGTVNLLKAMGAGGCKNIVFSSSATVYGDPASVPVTEDF---PTSATNPYGRTKLFIEYILKDVYESDkSWNVILLRYFNPVGAHksgqigeNPKGIPN 197
                 ***************************************...*********************9998879********************9999999** PP

                 SHHHHHHHHHHTTS.SSEEEET......TST-EEEEEEHHHHHHHHHHHHHHHTT-STTEEEEES CS
   Epimerase 184 rvipalirkilegk.qevtllg......dgtalRdflyveDvaeaillvlehvdagdkgeiyniG 241
                 +++p +i++++ gk + +t++g      dgt +Rd+++v D+a+++l++l++v++++   +yn+G
  KOO22277.1 198 NLMP-YIQQVAVGKrPHLTVYGsdyptkDGTGVRDYIHVVDLAKGHLAALKKVETNPGCATYNLG 261
                 **99.9999***9999************************************9998877799998 PP

>> 3Beta_HSD  3-beta hydroxysteroid dehydrogenase/isomerase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.0   0.0   6.5e-17   9.8e-14       2     129 ..       5     136 ..       4     165 .. 0.83

  Alignments for each domain:
  == domain 1  score: 51.0 bits;  conditional E-value: 6.5e-17
   3Beta_HSD   2 vtGgaGFlGralvkeLvrleelkevrvlD..lrespelleelskvnvkk..viegDvtdkdklee..alegvdvvihlaslvdvag.kltedeimkvnv 93 
                 +tGgaG++G++   e+++++  +ev v+D   + s+e l+++ k+  k+  +++ D++d++ +e   a  + d+vih a+l  v   + +   +++ n+
  KOO22277.1   5 LTGGAGYIGSHTALEILEAG--HEVEVMDnmYNASEEALNRVMKLSGKEikLHKIDLLDAPGMEVlfASTKFDAVIHFAGLKAVGEsVAKPLFYYENNI 101
                 79******************..5******7777889999999999888778*********9988633677889***********98577778899**** PP

   3Beta_HSD  94 kGTrnvleacvkagvrvlvYtSsaevvgpnslgeei 129
                  GT n+l+a    g + +v+ Ssa v g+   + ++
  KOO22277.1 102 TGTVNLLKAMGAGGCKNIVFSSSATVYGD-PASVPV 136
                 **************************999.444444 PP

>> Polysacc_synt_2  Polysaccharide biosynthesis protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.6   0.0   5.5e-14   8.3e-11       1     174 [.       3     182 ..       3     186 .. 0.78
   2 ?   -1.7   0.0      0.86   1.3e+03     235     276 ..     234     274 ..     229     288 .. 0.62

  Alignments for each domain:
  == domain 1  score: 41.6 bits;  conditional E-value: 5.5e-14
                      EEEETTTSHHHHHHHHHHHHHB-SEEE....EEES-HHHHHHHHHH......-TTEEEE....E--TT-HHHHHHHTT..T-SEEEE------H CS
  Polysacc_synt_2   1 vlvtGagGsiGselvrqilkkkpkkii....llerdElklyeiekeleeelkkkklkveivpvigdvrdkerlekaleelkvdvvfhaAAlKhV 90 
                      vl+tG++G iGs+   +il+   + +     +++ +E +l ++ k      + k++k++      d+ d+  +e ++ ++k d+v+h A lK V
       KOO22277.1   3 VLLTGGAGYIGSHTALEILEAGHE-VEvmdnMYNASEEALNRVMKL-----SGKEIKLH----KIDLLDAPGMEVLFASTKFDAVIHFAGLKAV 86 
                      89*****************99543.440022445555555555444.....34455445....45999************************** PP

                      HHHHHSHHHHHHHHHHHHHHHHHHHHHTT-SEEEEEEE.....GGGSS-.........-SHHHHHHHHHHHHHHHGGG--SSS--EEEEEEE-E CS
  Polysacc_synt_2  91 PlveenpleaiktNvlgtenvieaaieagvkkvvliSt.....DKAvnP.........tnvmGatKrlaekllqalakeseekktkfvvvRfGN 170
                           +pl   ++N++gt n+++a  + g k++v+ S+     D A  P         tn +G tK++ e +l  + ++   k+ ++++ R+ N
       KOO22277.1  87 GESVAKPLFYYENNITGTVNLLKAMGAGGCKNIVFSSSatvygDPASVPvtedfptsaTNPYGRTKLFIEYILKDVYESD--KSWNVILLRYFN 178
                      **********************************988645555666554333333333799*********9999988887..778999999988 PP

                      ETTG CS
  Polysacc_synt_2 171 VlgS 174
                       +g+
       KOO22277.1 179 PVGA 182
                      7775 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 0.86
                      EHHHHHHHH..........SSSS-EEE----TT--SS-EEE- CS
  Polysacc_synt_2 235 kivdlakalielsgleekkeedieikitGlRpGEklyEeLli 276
                      ++vdlak  ++  ++ +++++ +++   G+ +G  + E+L  
       KOO22277.1 234 HVVDLAKGHLAALKK-VETNPGCATYNLGTGNGNSVLEMLAA 274
                      567777765444433.33346777777777777777777665 PP

>> RmlD_sub_bind  RmlD substrate binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.5   0.0   3.6e-12   5.4e-09       1     138 [.       1     161 [.       1     175 [. 0.92

  Alignments for each domain:
  == domain 1  score: 35.5 bits;  conditional E-value: 3.6e-12
                    EEEEEESTTSHHHHHHHHHCTTTSEEEEEE-TT......................T--TTSHHHHHHHHHHH--SEEEE------HHHHHHSHHHH CS
  RmlD_sub_bind   1 mkilvtGanGqlGseLakqlaeeglevlaltre......................eldltdaeavaellkeakpdvvvnaAAytavDkaEseeeaa 74 
                    mk+l+tG+ G +Gs+ a ++ e+g+ev  +++                       ++dl da  ++ l++++k d+v++ A  +av +   ++   
     KOO22277.1   1 MKVLLTGGAGYIGSHTALEILEAGHEVEVMDNMynaseealnrvmklsgkeiklhKIDLLDAPGMEVLFASTKFDAVIHFAGLKAVGESVAKPLFY 96 
                    89*****************999999999998888999*********************************************************** PP

                    HHHHTHHHHHHHHHHHHCT-E.EEEEEEGGGS-S-TTS-B-TTS----SSHHHHHHHHHHHHHHH CS
  RmlD_sub_bind  75 yavnaeavealAeaaaavgal.LihvStDyVFdGekkrpYeeddetsPlnvYGrtKlaGEqavla 138
                    y+ n +++ +l +a  a g + +++ S+  V+   ++ p +ed +ts  n YGrtKl  E   ++
     KOO22277.1  97 YENNITGTVNLLKAMGAGGCKnIVFSSSATVYGDPASVPVTEDFPTSATNPYGRTKLFIEYILKD 161
                    ***************9999863788888899988899********************99977665 PP

>> NAD_binding_10  NAD(P)H-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.8   0.0   1.1e-08   1.7e-05       1     130 [.       7     158 ..       7     191 .. 0.66

  Alignments for each domain:
  == domain 1  score: 24.8 bits;  conditional E-value: 1.1e-08
                     TTTSHHHHHHHHHHHHC-T-EEEEE..ETT..HHHCHHHH..CTTTCEEEE--TT-CCHHHHHHT..T-SEEEES---TCC...........HHH CS
  NAD_binding_10   1 GAtGkvGrllvkellargghevtal..vRn..peklaele..aeeglevvegdvtdvedlaealk..gadaVvsalggggk...........dee 76 
                     G+ G +G++ + e+l++g hev ++  + n  +e l+++   + +++++ ++d++d+  ++  ++    daV+  +g ++            +  
      KOO22277.1   7 GGAGYIGSHTALEILEAG-HEVEVMdnMYNasEEALNRVMklSGKEIKLHKIDLLDAPGMEVLFAstKFDAVIHFAGLKAVgesvakplfyyE-- 98 
                     999**************5.9*9987333333244444333334699**********97666555522779**888855555333444555542.. PP

                     H....HHHHHHHHHHCT--EEEEEEETTTTSGCGCH...HHHHHHHCCHHHHHHHHHHHHH CS
  NAD_binding_10  77 g....aknivdaakeagvkRfvlvsaigvgdevpge...fgewnkellkaylaakraaeel 130
                          ++n+++a+ + g k +v+ s++ v+ + p +   ++++ +++ ++y + k   e +
      KOO22277.1  99 NnitgTVNLLKAMGAGGCKNIVFSSSATVYGD-PASvpvTEDFPTSATNPYGRTKLFIEYI 158
                     05577************************964.2220112233334444444444444444 PP

>> adh_short  short chain dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.0   0.1   2.9e-08   4.4e-05       3     118 ..       3     110 ..       1     132 [. 0.84

  Alignments for each domain:
  == domain 1  score: 23.0 bits;  conditional E-value: 2.9e-08
                 EEEESTTSHHHHHHHHHHHHTT-EEEEEESCHHHHHHHHHHHHHT.TSEEEEEE-TTTSHHHHHHHHHHHHHHHSSESEEEE---SS--SSGGGCSHHH CS
   adh_short   3 vlvtGassGIGraiakelakeGakvvvvdrseekleevakelkee.gakalaiqvDvtdreevealvekavkklgkldvLvnNAGitgsgpfselseee 100
                 vl tG+++ IG  +a e++++G +v v+d+  ++ ee+++ + ++ g+++   ++D+ d+  +e l++       k d++++ AG++ +g+    s ++
  KOO22277.1   3 VLLTGGAGYIGSHTALEILEAGHEVEVMDNMYNASEEALNRVMKLsGKEIKLHKIDLLDAPGMEVLFAST-----KFDAVIHFAGLKAVGE----SVAK 92 
                 99******************************************99999***************999998.....8999999999953333....3444 PP

                 HHHHHHHHTHHHHHHHHH CS
   adh_short 101 wervievNltgvflltra 118
                    ++e N+tg+++l +a
  KOO22277.1  93 PLFYYENNITGTVNLLKA 110
                 445678888888888766 PP

>> NAD_binding_4  Male sterility protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.0   3.4e-06    0.0051      81     203 ..      65     176 ..       5     213 .. 0.66

  Alignments for each domain:
  == domain 1  score: 16.0 bits;  conditional E-value: 3.4e-06
                    HHHH..HHH--EEEE--SS-S.STTSSE...EHHHHHHHHHHHHHHHTSSS--.-EEEEEEGGGTTS-TTT--SSS-H......HHH--EEEETTT CS
  NAD_binding_4  81 lqel..aeevdviihsaAtvnfdepyke...llrvNveGtrevlelakklkklkvllhvSTayvngeregeveekvyeegekeekldederaklkg 171
                    ++ l  + + d++ih a+   + e++ +    ++ N++Gt+++l+   ++  +  +++ S+a+v+g+  +                   +++  ++
     KOO22277.1  65 MEVLfaSTKFDAVIHFAGLKAVGESVAKplfYYENNITGTVNLLKAMGAGGCK-NIVFSSSATVYGDPASV----------------PVTEDFPTS 143
                    3333336789**************9999777899***********88888777.99**********99953................345666778 PP

                    CCCHHHHHHHHHHHHHHHHHHH.H---EEEEEE CS
  NAD_binding_4 172 lpntYeqsKalaEklvrearrr.sglpvvivRp 203
                     +n Y ++K   E+++++  ++ + ++v+ +R 
     KOO22277.1 144 ATNPYGRTKLFIEYILKDVYESdKSWNVILLRY 176
                    8999*********99998765413445555555 PP

>> KR  KR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.9   0.1   3.7e-07   0.00056       3     144 ..       3     131 ..       2     135 .. 0.77

  Alignments for each domain:
  == domain 1  score: 19.9 bits;  conditional E-value: 3.7e-07
                 EEEETTTSHHHHHHHHHHHHHHS-EEEEE-SS..--HHHHHHHHHHHHTT-EEEE----TT-HHHHHHHHHHHHHHSS---EEEE---------TTT-- CS
          KR   3 ylitGGlGgLGlelarwlaekgarhlvllsRsaaadedskaliaelealgaevevvaaDvsdkdavealleeikaeeppikGvihaAgvlrdklleemt 101
                 +l+tGG+G +G ++a  ++e g +  v+       +++++al + ++ +g e+++ ++D+ d+  +e l+++ k        vih Ag+ + +     +
  KOO22277.1   3 VLLTGGAGYIGSHTALEILEAGHEVEVM-DNM--YNASEEALNRVMKLSGKEIKLHKIDLLDAPGMEVLFASTK-----FDAVIHFAGLKAVGE----S 89 
                 699*******************765444.444..34555556666777799********************998.....677******976554....3 PP

                 HHHHHHHHTTTTHHHHHHHHHTTTS--SEEEEEEEHHHHH--T CS
          KR 102 aedleqvlapKvkGawnLhelledesldffvlfSSiagllgsa 144
                  ++    ++  ++G+ nL +++     + +v fSS a+++g +
  KOO22277.1  90 VAKPLFYYENNITGTVNLLKAMGAGGCKNIV-FSSSATVYGDP 131
                 3444456677789999999999988887755.67777777765 PP

>> 3HCDH_N  3-hydroxyacyl-CoA dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   0.1   2.9e-06    0.0044       6      56 ..       8      58 ..       5      93 .. 0.76
   2 ?   -3.3   0.0       4.7   7.1e+03     130     142 ..     166     181 ..     153     184 .. 0.66

  Alignments for each domain:
  == domain 1  score: 16.9 bits;  conditional E-value: 2.9e-06
                --SCCHHHHHHHHHHTT-EEEEE-S-HHHHHHHHHHHHHHHHCCTTTTSS- CS
     3HCDH_N  6 GaGtmGagiaavfasagleVvlvdiseealekalekieksleklvekgklk 56
                GaG +G+  a  +++ag+eV ++d   +a e+al+++ k   k ++ +k++
  KOO22277.1  8 GAGYIGSHTALEILEAGHEVEVMDNMYNASEEALNRVMKLSGKEIKLHKID 58
                9******************************99999999888888888777 PP

  == domain 2  score: -3.3 bits;  conditional E-value: 4.7
                 GG...EEEEEE-SSTT CS
     3HCDH_N 130 er...viglHFfnPpp 142
                 ++   vi l +fnP+ 
  KOO22277.1 166 DKswnVILLRYFNPVG 181
                 44444899999**985 PP

>> NmrA  NmrA-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.4   0.0   2.8e-05     0.042       1     102 [.       3     124 ..       3     138 .. 0.70
   2 ?   -0.7   0.0      0.55   8.3e+02     183     230 ..     235     284 ..     200     287 .. 0.76

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 2.8e-05
                 EEESSTTSHHHHHHHHHHHHHT-EEEEE..ES-S................-SHHHHHHHHSTTEEEES-TT-HHHHHHHHT..T-SEEEE---GG.... CS
        NmrA   1 IlviGaTGrqGksvvrallkaghkvral..vRdt................kselakslkeaGvelvkgdlddkeslvealk..gvdvvfsvtgfy.... 75 
                 +l +G++G++G++ +  +l+agh+v ++  + +                 k               k dl d   ++ ++   + d+v+   g++    
  KOO22277.1   3 VLLTGGAGYIGSHTALEILEAGHEVEVMdnMYNAseealnrvmklsgkeiKL-------------HKIDLLDAPGMEVLFAstKFDAVIHFAGLKavge 88 
                 6889*********************997444555544333333333333333.............3666666666666554113455665555555666 PP

                 .........S-HHHHHHHHHHHHHHHS-SEEEEEE- CS
        NmrA  76 .........skeiedgkklvdAakeaGvkhfiySsl 102
                          +++i   ++l +A  + G k++++Ss 
  KOO22277.1  89 svakplfyyENNITGTVNLLKAMGAGGCKNIVFSSS 124
                 6666666789************99999******996 PP

  == domain 2  score: -0.7 bits;  conditional E-value: 0.55
                 HHHHHHHHHHHHHHHHHH..TTEEEEE-SEEE-HHHHHHHHHHHHTS-EE CS
        NmrA 183 eeDiGafvikilkdprkl..kgkriklagntlsgneivelfekkigktvk 230
                 + D ++  +++lk++++    + +   +gn  s+ e++++++k+ gk+ k
  KOO22277.1 235 VVDLAKGHLAALKKVETNpgCATYNLGTGNGNSVLEMLAAYSKACGKELK 284
                 56667777777777666643334445678889999999999999999876 PP

>> NAD_binding_2  NAD binding domain of 6-phosphogluconate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.1   0.00019      0.28       6      44 ..       8      46 ..       6      64 .. 0.88

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00019
                   --SHHHHHHHHHHHHTT-EEEEE-SSHHHHHHHHHTTEE CS
  NAD_binding_2  6 GlGvMGsnmalnllkagykvavynrtkekveelvaegak 44
                   G G +Gs+ al++l+ag++v v++   ++ ee++++ +k
     KOO22277.1  8 GAGYIGSHTALEILEAGHEVEVMDNMYNASEEALNRVMK 46
                   899*********************999999999887654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (343 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       329  (0.0183502); expected 358.6 (0.02)
Passed bias filter:                      323  (0.0180155); expected 358.6 (0.02)
Passed Vit filter:                        47  (0.00262145); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.51u 0.29s 00:00:00.80 Elapsed: 00:00:00.45
# Mc/sec: 2309.39
//
Query:       KOO22278.1  [L=881]
Description: cation channel family protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.8e-47  161.7  20.0    6.8e-24   84.4   4.9    2.3  2  Ion_trans     Ion transport protein
    4.9e-22   77.7  10.1    1.5e-13   50.5   1.2    3.3  4  Ion_trans_2   Ion channel
    5.3e-16   58.5   0.0    1.5e-15   57.1   0.0    1.8  1  cNMP_binding  Cyclic nucleotide-binding domain
  ------ inclusion threshold ------
       0.21   12.2   2.8       0.16   12.5   0.4    2.0  2  Hrs_helical   Hepatocyte growth factor-regulated tyrosine kin


Domain annotation for each model (and alignments):
>> Ion_trans  Ion transport protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   82.8   7.2   4.9e-27   2.2e-23      39     242 ..      22     279 ..       6     283 .. 0.76
   2 !   84.4   4.9   1.5e-27   6.8e-24       3     242 ..     366     654 ..     364     657 .. 0.79

  Alignments for each domain:
  == domain 1  score: 82.8 bits;  conditional E-value: 4.9e-27
                 HHHHHHHHHHHHHHHHHHHTH................HHHHHHCHSHHHHHHHHHHHHHHHHH...........HHHH..................HHH CS
   Ion_trans  39 elvftaiftlemllkilalgl................likkrYlrdpwnilDflvvlpsllsl...........vlse..................esl 92 
                 el++++ f+ ++ll ++++ +                 i+ +Y++  w+++D+++++p++  +                                  s 
  KOO22278.1  22 ELFVDCCFFADILLTFRTALIlddpekqerkvvtdarRIAYHYIKG-WFVIDVVSTIPIDTIIeltlyastsaaE--AqslrtcsfltespedsnlRST 117
                 78999*************9999************************.9************988667766655550..0555566667777778788444 PP

                 HHHHHHHHHGGGGGGHHH.........CHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCCCC..SCCSTSSSTTTSSSSSS.. CS
   Ion_trans  93 lllsvlrlfrvlrllkli.........srleglrtlvtalirsvkdllnvlllllvvlfifaligvqlfkgklrekne..caktwenpnngntnFdn.. 178
                  +l+v+rl+r++rllkl+         +rl+   ++  a++++++ l ++lll+++ ++ ++ i+ q+      e+++   a++w +            
  KOO22278.1 118 MMLRVMRLVRLVRLLKLFrtlklgllfRRLDDAVNINPAVFKMARLLAYILLLSHLSACSWFGIFKQVV-----EEGSepVADNWIE---------Aya 202
                 45555555555555554444455555599999999888***************************9999.....2211232222222.........122 PP

                 ...................HHHHHHHHHHHHTTSSHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
   Ion_trans 179 ...................fftallwlfrlmttegwgdilyatldekskvaliyfvifiilgsflllNlliaviadnfqelte 242
                                    + +al+w+f+++tt+g+gdi++++ +e+       fvi++ +++++++++ ia  ++  +++  
  KOO22278.1 203 saqlvpkladairgdmltqYTSALYWAFTTLTTVGYGDIVPKNVSEM------WFVILMEFVGLIVFSIAIAQLTNIMDNFSA 279
                 2333444555555555555****************************......******************966665555443 PP

  == domain 2  score: 84.4 bits;  conditional E-value: 1.5e-27
                 HHHHHHHHHHHHHHHHHHCCCSSSSHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHTH...........HHHHHHCHSHHHHHHHHHHHHHHHHH..... CS
   Ion_trans   3 vfelfilllillncvflaletyfpedelektileilelvftaiftlemllkilalgl...........likkrYlrdpwnilDflvvlpsllsl..... 85 
                  ++    +l+++++v+++l+  f+e+ + +++++++e+ ++ if+++++++ ++++l           +i+++Yl + w++ D+ + +p++l l     
  KOO22278.1 366 AWDACLAVLVVYSVVVVPLRIGFNEEATPRSAIFWFEVSIDFIFIIDIVVNCRTAYLtahgllekrprQIARHYLLS-WFVADVAASIPVDLILlanqa 463
                 58888899***************9976666***********************************************.9*************9966555 PP

                 ..HHHH............HHHHHHHHHHHHGGGGGGHHHCHSHHHHH...HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH.HHHHTTSCCCC....... CS
   Ion_trans  86 ..vlse............esllllsvlrlfrvlrllklisrleglrt...lvtalirsvkdllnvlllllvvlfifalig.vqlfkgklrek....... 159
                                   + + +l++lrlfr++rl+kl + ++ ++    +   +++ vk  +++ +l+++ ++++ + + + l + + + +       
  KOO22278.1 464 faE--GdgseerdsyrmtKLIKALRLLRLFRLVRLVKLARLIKIVQEklqINPFVLQLVKLCFKMSFLIHLSACAWHWSAaFDLPEYSPFACqaraaag 560
                 540..0555666777788566666666666666666666666655552213447***********************9996777755555557666666 PP

                 ......CC............SCCSTSSSTTTSSSSSS.........HHHHHHHHHHHHTTSSHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHH CS
   Ion_trans 160 ......ne............caktwenpnngntnFdn.........fftallwlfrlmttegwgdilyatldekskvaliyfvifiilgsflllNllia 231
                       ++            +           ++F+n         +  +++w++++  t+g+gdi +    e+      ++ i+i+l++ +++ ++++
  KOO22278.1 561 qqtcfdERvtmamatwlqyfE----------ASHFSNgewpttleaYTASIYWAMTTVATIGYGDIKSISNLER------LMSIVIMLSGSIVFGVVVG 643
                 555555114543333333332..........344444555555555****************************......******************* PP

                 HHHHHHHHHHH CS
   Ion_trans 232 viadnfqelte 242
                  ++d+++++++
  KOO22278.1 644 GMSDSLEQMNS 654
                 *******9986 PP

>> Ion_trans_2  Ion channel
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.8   0.9       2.9   1.3e+04      14      37 ..      16      36 ..       6      36 .. 0.58
   2 !   50.5   1.2   3.3e-17   1.5e-13      24      77 ..     221     274 ..     204     276 .. 0.92
   3 ?   -2.7   0.1       1.3   5.9e+03       2      35 ..     370     404 ..     369     405 .. 0.62
   4 !   40.9   2.0   3.4e-14   1.5e-10      23      77 ..     595     649 ..     569     651 .. 0.82

  Alignments for each domain:
  == domain 1  score: -3.8 bits;  conditional E-value: 2.9
                 HHT....T---HHHHHHHHHHHHT CS
  Ion_trans_2 14 ysleegwekwsfldalYfsfvtlt 37
                  +  ++w    f+d+ +f+ + lt
   KOO22278.1 16 SAD-WTW--ELFVDCCFFADILLT 36
                 222.333..568889999877765 PP

  == domain 2  score: 50.5 bits;  conditional E-value: 3.3e-17
                  -HHHHHHHHHHHHTTS----SSTT-----HHHHHHHHHHHHHHHHHHHHHHHHH CS
  Ion_trans_2  24 sfldalYfsfvtltTiGYGdivpetdagrlftivyillGlalfalflavlgkvl 77 
                  ++++alY++f+tltT+GYGdivp++   ++f+i+  ++Gl++f++++a l++++
   KOO22278.1 221 QYTSALYWAFTTLTTVGYGDIVPKNVSEMWFVILMEFVGLIVFSIAIAQLTNIM 274
                  7899********************9999*******************9998876 PP

  == domain 3  score: -2.7 bits;  conditional E-value: 1.3
                  HHHHTCHHHHHHHHT.....T---HHHHHHHHHHH CS
  Ion_trans_2   2 vlllvlifgaviysleeg.wekwsfldalYfsfvt 35 
                  +l +++++++v++ l+ g  e+ +  +a++++ v+
   KOO22278.1 370 CLAVLVVYSVVVVPLRIGfNEEATPRSAIFWFEVS 404
                  56666777777777733335666777777777665 PP

  == domain 4  score: 40.9 bits;  conditional E-value: 3.4e-14
                  --HHHHHHHHHHHHTTS----SSTT-----HHHHHHHHHHHHHHHHHHHHHHHHH CS
  Ion_trans_2  23 wsfldalYfsfvtltTiGYGdivpetdagrlftivyillGlalfalflavlgkvl 77 
                    ++ ++Y++++t+ TiGYGdi  ++++ rl++iv++l G ++f++++  +++ l
   KOO22278.1 595 EAYTASIYWAMTTVATIGYGDIKSISNLERLMSIVIMLSGSIVFGVVVGGMSDSL 649
                  45778******************************************98887766 PP

>> cNMP_binding  Cyclic nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.1   0.0   3.3e-19   1.5e-15       3      87 ..     749     833 ..     747     835 .. 0.94

  Alignments for each domain:
  == domain 1  score: 57.1 bits;  conditional E-value: 3.3e-19
                   EE-TT-EEE-TTSB-SEEEEEEES-EEEEEEETTS.EEEEEEE-TTEEESHHHHH.HTS--SSEEEESSTEEEEEEEHHHHHHHHH CS
  cNMP_binding   3 sfkagevifrqGdpadslyivlsGevrvyrlsedgkevvlavlgpGdlfGelall.tgeprtatvvAltdsellalprddflellq 87 
                   +f++ + if++Gd + ++y+v+ G+v v     dg+ev+l++l +G++fGe+a++ ++ +r a+v+A++ + +++++++++++llq
    KOO22278.1 749 YFAPLDWIFKEGDLGLEMYFVQLGSVDVI-CFLDGEEVILETLEAGAYFGEVAVMmDDVRREASVRAVSFCSMFSFTKENLNRLLQ 833
                   5788899*********************7.9************************87778************************98 PP

>> Hrs_helical  Hepatocyte growth factor-regulated tyrosine kinase substrate
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.1       1.3   5.7e+03      27      67 ..     267     307 ..     265     312 .. 0.77
   2 ?   12.5   0.4   3.7e-05      0.16      36      75 ..     827     866 ..     798     872 .. 0.86

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 1.3
  Hrs_helical  27 ianDsavqslFqkltamhsqllkriqeqeekraeyeslqdk 67 
                  ia+ + + + F+  +++ s l++++ +   +r+   ++q +
   KOO22278.1 267 IAQLTNIMDNFSAQKKLLSALMAEVTRYMRERKMTPRMQRR 307
                  56667788888888889999999988888888877777765 PP

  == domain 2  score: 12.5 bits;  conditional E-value: 3.7e-05
  Hrs_helical  36 lFqkltamhsqllkriqeqeekraeyeslqdklaqikear 75 
                    ++l +m + ++k++q+q e+r ++ +l+ +++++k a 
   KOO22278.1 827 NLNRLLQMYPDVMKKMQTQMERRLRQYRLKRSIQNVKSAN 866
                  5578999******************************996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (881 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       694  (0.0387082); expected 358.6 (0.02)
Passed bias filter:                      417  (0.0232584); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.65u 0.28s 00:00:00.93 Elapsed: 00:00:00.42
# Mc/sec: 6280.31
//
Query:       KOO22279.1  [L=187]
Description: opa3-like protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.3e-26   91.5   1.0    5.3e-26   90.8   0.7    1.6  1  OPA3      Optic atrophy 3 protein (OPA3)
      0.006   16.6   6.7     0.0097   16.0   6.7    1.3  1  DUF2514   Protein of unknown function (DUF2514)
  ------ inclusion threshold ------
      0.014   15.7   0.0      0.026   14.9   0.0    1.4  1  RIC3      Resistance to inhibitors of cholinesterase homologu
      0.075   13.1   0.2        1.1    9.3   0.0    2.2  2  DUF1664   Protein of unknown function (DUF1664)
        4.3    7.4   6.3         12    6.0   5.9    1.9  1  CCDC23    Coiled-coil domain-containing protein 23


Domain annotation for each model (and alignments):
>> OPA3  Optic atrophy 3 protein (OPA3)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   90.8   0.7   1.5e-29   5.3e-26       4     119 ..       7     121 ..       5     159 .. 0.94

  Alignments for each domain:
  == domain 1  score: 90.8 bits;  conditional E-value: 1.5e-29
        OPA3   4 lKLaslavRtlsKPianrikaqakehprfrkvcirlaqalhrlemrlrlrllgdekaarkirpLseekAvelGAellgEafifsvagglilyEywrssr 102
                 +KL+ lavR+lsKPia   k+ a ++++++  +  ++++lhr++ +l++   g+ +  ++  pL+e++Av  GA++++E++i+s+ag++++yEy +s+ 
  KOO22279.1   7 IKLFFLAVRQLSKPIAGVAKQMATNSESLKDTLSLFGRVLHRFDLQLNRIAEGK-PMLTSLAPLPEARAVIRGADVISEMVIYSIAGATVYYEYCMSKI 104
                 7**********************************************9999999.66679*************************************** PP

        OPA3 103 keakkeeevkeeleele 119
                 ke++ke +vk e ++ e
  KOO22279.1 105 KERAKEAAVKAERARHE 121
                 ********999865544 PP

>> DUF2514  Protein of unknown function (DUF2514)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   6.7   2.7e-06    0.0097      60     135 ..     107     182 ..      91     185 .. 0.69

  Alignments for each domain:
  == domain 1  score: 16.0 bits;  conditional E-value: 2.7e-06
     DUF2514  60 aaaekavkdaqekaaaAradavgaaa..aadrLrqeaakLaaaksavaadsaaaargkaaaraavvLadlLsraaera 135
                  a+e a+ +a +++  A+a+a +a+   + dr r+e+++L+     +++d +   rg+ aa  a+ Lad L  +++r 
  KOO22279.1 107 RAKE-AAVKAERARHEAAAAAHEAQNweTHDRHRDELRHLEMRITLLQQDLQ-HMRGEKAATEAAALADPLATSNHRR 182
                 3444.55556666666666665555422789*********766666666666.56777888888889**999988875 PP

>> RIC3  Resistance to inhibitors of cholinesterase homologue 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.9   0.0   7.2e-06     0.026      78     134 ..      87     150 ..      77     159 .. 0.71

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 7.2e-06
        RIC3  78 lYti.GilvfilYtllKikskkkkekskeakakkkakenakkktetee......eLeeLqerLa 134
                 +Y i G  v+  Y + Kik + k+   k+++a ++a+  a+ +++ e       eL++L++r+ 
  KOO22279.1  87 IYSIaGATVYYEYCMSKIKERAKEAAVKAERARHEAAAAAHEAQNWEThdrhrdELRHLEMRIT 150
                 7887799************999888666444444444444444442223335559999999975 PP

>> DUF1664  Protein of unknown function (DUF1664)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3   0.0   0.00031       1.1      31      80 ..       9      58 ..       6      66 .. 0.90
   2 ?    1.7   0.1     0.069   2.5e+02      60      81 ..     141     162 ..     102     172 .. 0.76

  Alignments for each domain:
  == domain 1  score: 9.3 bits;  conditional E-value: 0.00031
     DUF1664 31 lmfvTkrslsdavesvskqleqvseslaatkrhLssridrvdkkldeqke 80
                l+f   r ls+ ++ v+kq+ + sesl++t   + + ++r d +l+  +e
  KOO22279.1  9 LFFLAVRQLSKPIAGVAKQMATNSESLKDTLSLFGRVLHRFDLQLNRIAE 58
                6788899************************9999999999999998766 PP

  == domain 2  score: 1.7 bits;  conditional E-value: 0.069
     DUF1664  60 tkrhLssridrvdkkldeqkei 81 
                   rhL+ ri  +++ l+++   
  KOO22279.1 141 ELRHLEMRITLLQQDLQHMRGE 162
                 4467777777777777766554 PP

>> CCDC23  Coiled-coil domain-containing protein 23
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.0   5.9    0.0033        12       2      29 ..     101     128 ..     100     165 .. 0.77

  Alignments for each domain:
  == domain 1  score: 6.0 bits;  conditional E-value: 0.0033
      CCDC23   2 akkekskvkepasrvEkakqksaqqelk 29 
                 + k k++ ke a++ E+a++ +a   ++
  KOO22279.1 101 MSKIKERAKEAAVKAERARHEAAAAAHE 128
                 67899***************99876554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (187 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1303  (0.0726756); expected 358.6 (0.02)
Passed bias filter:                      686  (0.038262); expected 358.6 (0.02)
Passed Vit filter:                        57  (0.00317921); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.45u 0.27s 00:00:00.72 Elapsed: 00:00:00.41
# Mc/sec: 1379.41
//
Query:       KOO22280.1  [L=507]
Description: pyrophosphate--fructose-6-phosphate 1-phosphotransferase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.8e-20   73.4   0.0    1.3e-19   70.7   0.0    2.0  1  PFK       Phosphofructokinase
  ------ inclusion threshold ------
      0.024   15.4   5.7        1.1   10.0   0.1    3.0  3  DUF4259   Domain of unknown function (DUF4259)


Domain annotation for each model (and alignments):
>> PFK  Phosphofructokinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.7   0.0   1.4e-23   1.3e-19       2     280 ..      93     421 ..      92     426 .. 0.72

  Alignments for each domain:
  == domain 1  score: 70.7 bits;  conditional E-value: 1.4e-23
                 EEEEEESS--T..THHHHHHHHHHHHHHTT..-EEEEETTHHHHHHTT-EEEE-.....SGGGTT-TT--S-TT-----GGGGSHHH............ CS
         PFK   2 iailtsGGdap..GmNaairavvrtaikkg..levygireGfeGlieeeieklt.....ledvsgilsegGtiLgsaRskefkereg............ 79 
                 +a+lt G ++   G  a+++a++    +k+  ++ ++  +GfeG++ ++   l+     +e+v+ + + gG+ +g +R  + +  e             
  KOO22280.1  93 VAVLTAGDPCEdlGFAATVEALIDEYAQKHpsIKLLCYTNGFEGMLLNQSVALHagqewREQVAACCASGGSPIGASRVVPTDAAECvrrglcapeedp 191
                 79********766999*******988877779*************87766656556664558*******************964444789999999999 PP

                 HHHHHHHHHHHT--EEEEEESHHHHHHHHHHHHT..T....--EEEEEEETT---TT-S--EEHHHHHHHHHHHHHHHHHHHHHH.......T-EEEEE CS
         PFK  80 rkkaaenlkklgidaLvviGGdgslkganklseerkglleelkivgiPkTidNDipgtdytiGfdTAlntiveaidklkstaksh.......krvfvvE 171
                 ++++a++l++ g+d L viGG  +l +a + + + ++   +l+ +g+P + +ND        G+ TA+++ ++ + +++ ++++        ++  v E
  KOO22280.1 192 MRRVANRLRQDGVDVLHVIGGHAALIAAAAVAIHLEREHYSLTAIGLPHALENDESPITQLPGAWTAADQSARFFARVRAETTAAvaahmptSTLHVHE 290
                 *************************9999998888887888*************999999***************999876544333448989999*** PP

                 ES-TT-THHHHHHHHHHT-SEEE-TTS---HH.....................HHHHHHHHHHT.T-S-EEEEEESSS..S-................. CS
         PFK 172 vmGrncGwlAlmaglaggadvilipEepfdie.....................eliekikklrkkgkkksiivvaEgakdkeg...............i 234
                 v G+ cGwl+++++      v + p e+ +++                     e++++ + + +                                   
  KOO22280.1 291 VAGGGCGWLTAATSAMYRDIVRMWPAEDEQVQllgpegapsrarwdlhavyvpEMARAFDLAAE------------------AarlaavvvrygqanvF 371
                 *********9988777764444555544444422232222222233333222222222222222..................02222223333322233 PP

                 .HHHHHHHHHHHH....SS-EEEEE-GGGGG-S---HHHHHHHHHHHHHH CS
         PFK 235 iaeelakeieekt....gievrvtvlGhlqrGgspsafDrilatrlGika 280
                 +ae +a +++e       ++v + + G   rG s++a D  l t  +  a
  KOO22280.1 372 VAEGVAAQLSELWplvhAQRVAYHKSGDAVRGASANAADARLITASAQVA 421
                 33333333333211111469999999999999999999988887776555 PP

>> DUF4259  Domain of unknown function (DUF4259)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.5   0.0   0.00072       6.5      46      70 ..      38      62 ..      16      88 .. 0.79
   2 ?   10.0   0.1   0.00013       1.1      33      78 ..     196     237 ..     175     283 .. 0.69
   3 ?   -2.4   0.7      0.82   7.3e+03      43      69 ..     356     382 ..     344     426 .. 0.70

  Alignments for each domain:
  == domain 1  score: 7.5 bits;  conditional E-value: 0.00072
     DUF4259 46 eyleadegaealaaaelvaallgge 70
                e ++ de+++alaaa l  +l++  
  KOO22280.1 38 EDVDEDEAEAALAAALLAEVLRPAR 62
                5599***********9998887765 PP

  == domain 2  score: 10.0 bits;  conditional E-value: 0.00013
     DUF4259  33 iealeevadaeedeyleadegaealaaaelvaallggeteieeaes 78 
                 ++     ++++  + l +  g++al+aa+ va+ l++e+++ +a +
  KOO22280.1 196 ANR----LRQDGVDVLHVIGGHAALIAAAAVAIHLEREHYSLTAIG 237
                 333....3446777999999*******************9877654 PP

  == domain 3  score: -2.4 bits;  conditional E-value: 0.82
     DUF4259  43 eedeyleadegaealaaaelvaallgg 69 
                 +  + + +  g++ + +ae vaa+l +
  KOO22280.1 356 ARLAAVVVRYGQANVFVAEGVAAQLSE 382
                 444455566666777777777776654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (507 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       698  (0.0389313); expected 358.6 (0.02)
Passed bias filter:                      457  (0.0254894); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.55u 0.27s 00:00:00.82 Elapsed: 00:00:00.43
# Mc/sec: 3557.46
//
Query:       KOO22281.1  [L=552]
Description: tropomodulin 1 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.31   11.2   6.4        1.2    9.4   0.1    3.8  4  LRR_6     Leucine Rich repeat
        1.4    8.7  18.2       0.33   10.8   5.3    2.4  2  DUF724    Protein of unknown function (DUF724)


Domain annotation for each model (and alignments):
>> LRR_6  Leucine Rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.9   0.2     0.033   2.9e+02       3      12 ..     358     367 ..     356     367 .. 0.89
   2 ?    9.4   0.1   0.00014       1.2       2      17 ..     389     404 ..     388     405 .. 0.92
   3 ?    0.8   0.0     0.073   6.6e+02       5      23 ..     421     439 ..     420     440 .. 0.88
   4 ?   -2.1   0.0      0.62   5.6e+03       2      10 ..     446     454 ..     445     456 .. 0.84

  Alignments for each domain:
  == domain 1  score: 1.9 bits;  conditional E-value: 0.033
       LRR_6   3 thLteLdLsg 12 
                 ++Lt+L+Ls+
  KOO22281.1 358 PSLTSLELSH 367
                 79******97 PP

  == domain 2  score: 9.4 bits;  conditional E-value: 0.00014
       LRR_6   2 nthLteLdLsgNdIgD 17 
                 ++h+t+L+Lsg +++D
  KOO22281.1 389 SPHVTKLNLSGLNLTD 404
                 79*************9 PP

  == domain 3  score: 0.8 bits;  conditional E-value: 0.073
       LRR_6   5 LteLdLsgNdIgDeGaeaL 23 
                 L+ L+L  Nd+  +G+  L
  KOO22281.1 421 LEVLSLEQNDFREAGLLEL 439
                 899********99999876 PP

  == domain 4  score: -2.1 bits;  conditional E-value: 0.62
       LRR_6   2 nthLteLdL 10 
                 nt L+eL L
  KOO22281.1 446 NTVLRELRL 454
                 999****98 PP

>> DUF724  Protein of unknown function (DUF724)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   5.3   3.6e-05      0.33     113     174 ..      52     123 ..      45     135 .. 0.81
   2 ?    4.2   4.0    0.0037        33     104     176 ..     176     259 ..     172     263 .. 0.80

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 3.6e-05
      DUF724 113 klekkieeeesekrkleeeidelekkilelerqlallk...........ekkeaadkeiarlkseaekleeel 174
                 k+e   +ee ++++ l + ++e+++kil+l+++la +k             +e+++ ei+ ++s ae++e++ 
  KOO22281.1  52 KIETASTEE-ASSSDLRAALAEKDSKILRLQTRLAGMKdklselesvmkVAEEEHATEISGMHSRAEAAETAK 123
                 555555555.556779******************99999999999999888889999********99998764 PP

  == domain 2  score: 4.2 bits;  conditional E-value: 0.0037
      DUF724 104 qtklleerkklekkieeeesekrkleeeidelek.kilelerqlallk..........ekkeaadkeiarlkseaekleeeled 176
                 q+++++++ +++k++++ e ++ ++ ee++  e+ ++ el++ +a+            ++ e+a++ +a++++++e+l+e+l++
  KOO22281.1 176 QAQVETALADAQKRLADGERQRVQVAEELARSERqRVHELQTASAVQDdlrhrchqwqSQAERAERALADSQVQCEALREALRE 259
                 778889999999999999999988888888766516889999988766787888888888888899999999998888888766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (552 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1386  (0.0773049); expected 358.6 (0.02)
Passed bias filter:                      436  (0.0243181); expected 358.6 (0.02)
Passed Vit filter:                        58  (0.00323498); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.67u 0.35s 00:00:01.02 Elapsed: 00:00:00.48
# Mc/sec: 3453.02
//
Query:       KOO22282.1  [L=185]
Description: hypothetical protein Ctob_005020 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (185 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       454  (0.0253221); expected 358.6 (0.02)
Passed bias filter:                      263  (0.014669); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.39u 0.26s 00:00:00.65 Elapsed: 00:00:00.42
# Mc/sec: 1328.07
//
Query:       KOO22283.1  [L=242]
Description: hypothetical protein Ctob_005022 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (242 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       319  (0.0177924); expected 358.6 (0.02)
Passed bias filter:                      221  (0.0123264); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.40u 0.27s 00:00:00.67 Elapsed: 00:00:00.41
# Mc/sec: 1756.10
//
Query:       KOO22284.1  [L=329]
Description: mfs [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    0.00054   19.0   9.4    0.00054   19.0   9.4    2.0  2  MFS_1     Major Facilitator Superfamily
  ------ inclusion threshold ------
      0.068   12.0   4.4       0.26   10.1   0.6    2.3  2  Sugar_tr  Sugar (and other) transporter


Domain annotation for each model (and alignments):
>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.0   9.4   6.1e-08   0.00054     244     352 ..      49     155 ..       1     156 [. 0.79
   2 !   10.4  18.1   2.5e-05      0.23     245     352 ..      50     155 ..      45     323 .. 0.78

  Alignments for each domain:
  == domain 1  score: 19.0 bits;  conditional E-value: 6.1e-08
       MFS_1 244 llaglllallalvgailallagrlsdrlgrrrrlllallllllaalglallavtssavllllvlvliGfglgfvfpsllalasdlappeeagtasglfn 342
                 l+ +++++++ +v+ +++l++g +sdrlg+r    ++ +l+ l+ ++l + a   s ++++l+ + iG  +  vf   l l  ++   e +g +s+++ 
  KOO22284.1  49 LQYTFMSSIALFVADGSMLVFGEISDRLGPRMCYGVGASLAWLGMVLLGVGARVGSDACWYLATFAIGASGPGVFMGCLMLGEKYP--ELHGVISAVAA 145
                 67777888888888888************97777777777777777777777667777777789999**99999999999999999..*********** PP

       MFS_1 343 tagslggalg 352
                 +++ ++++++
  KOO22284.1 146 SMWDASALVF 155
                 ****999886 PP

  == domain 2  score: 10.4 bits;  conditional E-value: 2.5e-05
       MFS_1 245 laglllallalvgailallagrlsdrlgrrrrlllallllllaalglallavtssavllllvlvliGfglgfvfpsllalasdlappeeagtasglfnt 343
                 + +++++++ +v+ +++l++g +sdrlg+r    ++ +l+ l+ ++l + a   s ++++l+ + iG  +  vf   l l  ++   e +g +s+++ +
  KOO22284.1  50 QYTFMSSIALFVADGSMLVFGEISDRLGPRMCYGVGASLAWLGMVLLGVGARVGSDACWYLATFAIGASGPGVFMGCLMLGEKYP--ELHGVISAVAAS 146
                 4455666666666667888888888888866666666666655555555555566666666777788877777777777888877..888888888888 PP

       MFS_1 344 agslggalg 352
                 ++ ++++++
  KOO22284.1 147 MWDASALVF 155
                 888887765 PP

>> Sugar_tr  Sugar (and other) transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.6   2.9e-05      0.26      43      95 ..      28      98 ..       2     128 .. 0.74
   2 ?    3.3   0.1    0.0033        30     121     157 ..     277     316 ..     264     320 .. 0.86

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 2.9e-05
                H.....................HHHHHHHTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH- CS
    Sugar_tr 43 e..................ssvlsglivsiflvGaiiGslfagllgdrfGRkkslliaavlfvigavlqaa 95
                +                  ++++++++ si+l++a  + l++g ++dr+G + ++ ++a l+  g vl ++
  KOO22284.1 28 AdvvsvscvlrrgdkccedQQLQYTFMSSIALFVADGSMLVFGEISDRLGPRMCYGVGASLAWLGMVLLGV 98
                335555555555555555599********************************************999876 PP

  == domain 2  score: 3.3 bits;  conditional E-value: 0.0033
                 HHHHHHHHTTS...-SCCHHHHHHHHHHHHHHHHHHHHHH CS
    Sugar_tr 121 vlvPmyisEiA...pkklRgalvslyqlaitfGilvaaif 157
                   +++++ E A   p +l+ al + ++la  +G ++++++
  KOO22284.1 277 LYITTFAEEAAllfPSSLAQALATTFNLAFPLGGFLTSVL 316
                 45667778888*************************9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (329 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       415  (0.0231469); expected 358.6 (0.02)
Passed bias filter:                      274  (0.0152825); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.46u 0.27s 00:00:00.73 Elapsed: 00:00:00.42
# Mc/sec: 2334.04
//
Query:       KOO22285.1  [L=680]
Description: surface antigen -like protein, partial [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
   4.2e-152  498.8   0.0    7.9e-41  139.0   0.0    4.0  4  LRR_5         BspA type Leucine rich repeat region (6 copies)
    7.2e-22   76.9   0.0      0.006   16.3   0.0    9.5 13  LRR_8         Leucine rich repeat
  ------ inclusion threshold ------
      0.035   13.8   0.1         36    4.2   0.0    4.6  5  Hexapep_2     Hexapeptide repeat of succinyl-transferase
       0.17   11.5   0.0        2.9    7.5   0.0    2.7  3  DUF2240       Uncharacterized protein conserved in archaea (D
       0.17   12.5  26.0    5.3e+02    1.2  11.3    4.5  2  Forkhead_N    Forkhead N-terminal region
        6.8    5.2   5.3         93    1.5   0.1    3.8  7  Peptidase_M8  Leishmanolysin


Domain annotation for each model (and alignments):
>> LRR_5  BspA type Leucine rich repeat region (6 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  125.2   0.0     5e-40   1.5e-36       3     125 ..     309     433 ..     307     434 .. 0.98
   2 !  139.0   0.0   2.7e-44   7.9e-41       1     124 [.     376     501 ..     376     501 .. 0.99
   3 !  137.7   0.0   6.8e-44     2e-40       1     124 [.     445     570 ..     445     571 .. 0.99
   4 !  116.5   0.0   2.5e-37   7.5e-34       1     113 [.     537     651 ..     537     657 .. 0.97

  Alignments for each domain:
  == domain 1  score: 125.2 bits;  conditional E-value: 5e-40
       LRR_5   3 IgsyaFync.nltsitipssvtsIgeyaFsnctslksitlpsslteigsyaFsncssltsitipssltsigeyaFsncsslkeitlpsnlttigssaFs 100
                 ++++aF++  ++tsi +p  +tsIge+aF  c+sl+si+lp +lt+ig +aF+ css+tsi++p  ltsi+  aF++css+++i lp  l++ig++aF+
  KOO22285.1 309 VPENAFCDDrSMTSIALPAGLTSIGEFAFDCCSSLTSIELPAGLTSIGGSAFARCSSMTSIELPAGLTSISRFAFAGCSSMTSIALPAGLRSIGEHAFY 407
                 689*****99***************************************************************************************** PP

       LRR_5 101 nc.slesitipssvtkigsnaFsncs 125
                 +c s++si++p+ +t+ig+ aF +cs
  KOO22285.1 408 GCsSMRSIELPAGLTSIGERAFTHCS 433
                 **9**********************6 PP

  == domain 2  score: 139.0 bits;  conditional E-value: 2.7e-44
       LRR_5   1 teIgsyaFync.nltsitipssvtsIgeyaFsnctslksitlpsslteigsyaFsncssltsitipssltsigeyaFsncsslkeitlpsnlttigssa 98 
                 t+I+++aF++c ++tsi +p  ++sIge+aF++c+s++si+lp +lt+ig++aF +css+tsi++p  ltsige+aF+ css+++i+lp  lt+ig++a
  KOO22285.1 376 TSISRFAFAGCsSMTSIALPAGLRSIGEHAFYGCSSMRSIELPAGLTSIGERAFTHCSSMTSIELPAGLTSIGESAFARCSSMTSIELPAGLTSIGEQA 474
                 78************************************************************************************************* PP

       LRR_5  99 Fsnc.slesitipssvtkigsnaFsnc 124
                 F++c s++si++p+ +t+ig+ aF++c
  KOO22285.1 475 FYDCsSMRSIELPAGLTSIGDGAFYGC 501
                 ****9*********************9 PP

  == domain 3  score: 137.7 bits;  conditional E-value: 6.8e-44
       LRR_5   1 teIgsyaFync.nltsitipssvtsIgeyaFsnctslksitlpsslteigsyaFsncssltsitipssltsigeyaFsncsslkeitlpsnlttigssa 98 
                 t+Ig++aF+ c ++tsi++p  +tsIge+aF++c+s++si+lp +lt+ig+ aF++cssltsi +p  lts+g+ aF++css+++i+lp  lt+ig+ a
  KOO22285.1 445 TSIGESAFARCsSMTSIELPAGLTSIGEQAFYDCSSMRSIELPAGLTSIGDGAFYGCSSLTSIALPAGLTSLGDGAFQGCSSMRSIELPAGLTSIGDGA 543
                 79************************************************************************************************* PP

       LRR_5  99 Fsnc.slesitipssvtkigsnaFsnc 124
                 F++c s++si +p+ +t++g+ aF++c
  KOO22285.1 544 FYGCsSMTSIALPAGLTSLGEGAFNGC 570
                 ****9********************** PP

  == domain 4  score: 116.5 bits;  conditional E-value: 2.5e-37
       LRR_5   1 teIgsyaFync.nltsitipssvtsIgeyaFsnctslksitlpsslteigsyaFsncssltsitipssltsigeyaFsncsslkeitlpsnlttigssa 98 
                 t+Ig+ aFy+c ++tsi +p  +ts+ge aF++c+s++si+lp +lt++g++aF+ css+tsi++p  ltsige+aF++css+++i lp  lt+ig+s 
  KOO22285.1 537 TSIGDGAFYGCsSMTSIALPAGLTSLGEGAFNGCSSMTSIELPAGLTSLGESAFARCSSMTSIELPAGLTSIGEHAFYGCSSMTSIALPAGLTSIGDST 635
                 79************************************************************************************************* PP

       LRR_5  99 Fsnc.slesitipssv 113
                 F +c s+ si++p+ +
  KOO22285.1 636 FLGCfSMMSIELPAGF 651
                 ***********99876 PP

>> LRR_8  Leucine rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.0       1.1   3.2e+03      47      58 ..     209     220 ..     207     221 .. 0.74
   2 ?    0.8   0.0      0.14   4.1e+02      37      56 ..     329     348 ..     328     351 .. 0.72
   3 !    6.4   0.0    0.0025       7.5      13      56 ..     352     394 ..     350     396 .. 0.90
   4 !    8.5   0.0   0.00055       1.6      13      56 ..     375     417 ..     373     419 .. 0.93
   5 !    9.4   0.0    0.0003      0.89      13      56 ..     398     440 ..     396     442 .. 0.93
   6 !    7.1   0.0    0.0015       4.6      13      56 ..     421     463 ..     419     465 .. 0.91
   7 !    9.0   0.0   0.00038       1.1      13      56 ..     444     486 ..     442     488 .. 0.94
   8 !   16.3   0.0     2e-06     0.006      13      56 ..     490     532 ..     488     534 .. 0.95
   9 !   12.3   0.0   3.5e-05      0.11      13      56 ..     513     555 ..     511     556 .. 0.93
  10 !   11.1   0.0   8.4e-05      0.25      13      56 ..     536     578 ..     534     580 .. 0.94
  11 !    8.4   0.0   0.00062       1.8      13      56 ..     559     601 ..     556     603 .. 0.93
  12 !    8.4   0.0   0.00058       1.7      13      56 ..     582     624 ..     580     626 .. 0.92
  13 ?   -0.3   0.0      0.31   9.4e+02      13      32 ..     628     647 ..     626     647 .. 0.85

  Alignments for each domain:
  == domain 1  score: -2.0 bits;  conditional E-value: 1.1
                 T--S-.EEE--S CS
       LRR_8  47 gLpsLrsLdLsg 58 
                 +L  +++LdLsg
  KOO22285.1 209 NLVEVTELDLSG 220
                 677888888886 PP

  == domain 2  score: 0.8 bits;  conditional E-value: 0.14
                 --GGGGGGGTT--S-.EEE- CS
       LRR_8  37 lttlspgafsgLpsLrsLdL 56 
                 lt++ + af++++sL+s+ L
  KOO22285.1 329 LTSIGEFAFDCCSSLTSIEL 348
                 56677777888888887776 PP

  == domain 3  score: 6.4 bits;  conditional E-value: 0.0025
                 -SEE-TTSSTT-TT--EEE--SS---GGGGGGGTT--S-.EEE- CS
       LRR_8  13 ltslddeaFkglsnLkvLdLsnNllttlspgafsgLpsLrsLdL 56 
                 lts++ +aF ++s++++++L    lt++s+ af+g++s +s+ L
  KOO22285.1 352 LTSIGGSAFARCSSMTSIELPAG-LTSISRFAFAGCSSMTSIAL 394
                 899*****************998.99999999***999998866 PP

  == domain 4  score: 8.5 bits;  conditional E-value: 0.00055
                 -SEE-TTSSTT-TT--EEE--SS---GGGGGGGTT--S-.EEE- CS
       LRR_8  13 ltslddeaFkglsnLkvLdLsnNllttlspgafsgLpsLrsLdL 56 
                 lts++  aF g+s+++++ L    l+++ ++af g++s rs+ L
  KOO22285.1 375 LTSISRFAFAGCSSMTSIALPAG-LRSIGEHAFYGCSSMRSIEL 417
                 899*****************999.****************9988 PP

  == domain 5  score: 9.4 bits;  conditional E-value: 0.0003
                 -SEE-TTSSTT-TT--EEE--SS---GGGGGGGTT--S-.EEE- CS
       LRR_8  13 ltslddeaFkglsnLkvLdLsnNllttlspgafsgLpsLrsLdL 56 
                 l s++ +aF+g+s++++++L    lt++ ++af +++s +s+ L
  KOO22285.1 398 LRSIGEHAFYGCSSMRSIELPAG-LTSIGERAFTHCSSMTSIEL 440
                 7899*****************99.**************999987 PP

  == domain 6  score: 7.1 bits;  conditional E-value: 0.0015
                 -SEE-TTSSTT-TT--EEE--SS---GGGGGGGTT--S-.EEE- CS
       LRR_8  13 ltslddeaFkglsnLkvLdLsnNllttlspgafsgLpsLrsLdL 56 
                 lts++  aF+++s++++++L    lt++ + af+ ++s +s+ L
  KOO22285.1 421 LTSIGERAFTHCSSMTSIELPAG-LTSIGESAFARCSSMTSIEL 463
                 899*****************999.99999999999999999887 PP

  == domain 7  score: 9.0 bits;  conditional E-value: 0.00038
                 -SEE-TTSSTT-TT--EEE--SS---GGGGGGGTT--S-.EEE- CS
       LRR_8  13 ltslddeaFkglsnLkvLdLsnNllttlspgafsgLpsLrsLdL 56 
                 lts++ +aF ++s++++++L    lt++ ++af +++s rs+ L
  KOO22285.1 444 LTSIGESAFARCSSMTSIELPAG-LTSIGEQAFYDCSSMRSIEL 486
                 89*******************99.****************9988 PP

  == domain 8  score: 16.3 bits;  conditional E-value: 2e-06
                 -SEE-TTSSTT-TT--EEE--SS---GGGGGGGTT--S-.EEE- CS
       LRR_8  13 ltslddeaFkglsnLkvLdLsnNllttlspgafsgLpsLrsLdL 56 
                 lts++d+aF+g+s+L+++ L    lt+l  gaf+g++s rs+ L
  KOO22285.1 490 LTSIGDGAFYGCSSLTSIALPAG-LTSLGDGAFQGCSSMRSIEL 532
                 89********************9.*****************988 PP

  == domain 9  score: 12.3 bits;  conditional E-value: 3.5e-05
                 -SEE-TTSSTT-TT--EEE--SS---GGGGGGGTT--S-.EEE- CS
       LRR_8  13 ltslddeaFkglsnLkvLdLsnNllttlspgafsgLpsLrsLdL 56 
                 ltsl+d+aF+g+s++++++L    lt++  gaf g++s +s+ L
  KOO22285.1 513 LTSLGDGAFQGCSSMRSIELPAG-LTSIGDGAFYGCSSMTSIAL 555
                 89*******************99.*************9998865 PP

  == domain 10  score: 11.1 bits;  conditional E-value: 8.4e-05
                 -SEE-TTSSTT-TT--EEE--SS---GGGGGGGTT--S-.EEE- CS
       LRR_8  13 ltslddeaFkglsnLkvLdLsnNllttlspgafsgLpsLrsLdL 56 
                 lts++d+aF+g+s+++++ L    lt+l +gaf g++s +s+ L
  KOO22285.1 536 LTSIGDGAFYGCSSMTSIALPAG-LTSLGEGAFNGCSSMTSIEL 578
                 89*******************99.***************99988 PP

  == domain 11  score: 8.4 bits;  conditional E-value: 0.00062
                 -SEE-TTSSTT-TT--EEE--SS---GGGGGGGTT--S-.EEE- CS
       LRR_8  13 ltslddeaFkglsnLkvLdLsnNllttlspgafsgLpsLrsLdL 56 
                 ltsl+ +aF+g+s++++++L    lt+l + af+ ++s +s+ L
  KOO22285.1 559 LTSLGEGAFNGCSSMTSIELPAG-LTSLGESAFARCSSMTSIEL 601
                 89******************999.999999***99999999887 PP

  == domain 12  score: 8.4 bits;  conditional E-value: 0.00058
                 -SEE-TTSSTT-TT--EEE--SS---GGGGGGGTT--S-.EEE- CS
       LRR_8  13 ltslddeaFkglsnLkvLdLsnNllttlspgafsgLpsLrsLdL 56 
                 ltsl+ +aF ++s++++++L    lt++ ++af g++s +s+ L
  KOO22285.1 582 LTSLGESAFARCSSMTSIELPAG-LTSIGEHAFYGCSSMTSIAL 624
                 899*****************999.*************9998866 PP

  == domain 13  score: -0.3 bits;  conditional E-value: 0.31
                 -SEE-TTSSTT-TT--EEE- CS
       LRR_8  13 ltslddeaFkglsnLkvLdL 32 
                 lts++d++F g+ ++++++L
  KOO22285.1 628 LTSIGDSTFLGCFSMMSIEL 647
                 89********9988887766 PP

>> Hexapep_2  Hexapeptide repeat of succinyl-transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.5   0.0      0.36   1.1e+03       2      20 ..     422     440 ..     421     449 .. 0.81
   2 ?    1.3   0.0     0.096   2.9e+02       2      24 ..     491     520 ..     491     521 .. 0.77
   3 ?    0.3   0.0       0.2   5.9e+02       2      18 ..     537     553 ..     536     566 .. 0.67
   4 ?   -1.8   0.0      0.95   2.8e+03       2      18 ..     606     622 ..     606     624 .. 0.79
   5 ?    4.2   0.0     0.012        36       2      20 ..     629     647 ..     629     648 .. 0.90

  Alignments for each domain:
  == domain 1  score: -0.5 bits;  conditional E-value: 0.36
                 EEE-TT-EE-TT-EESEEE CS
   Hexapep_2   2 viIGdnCliGanagiGvsl 20 
                 ++IG++ + + ++ + ++l
  KOO22285.1 422 TSIGERAFTHCSSMTSIEL 440
                 68****9999888876654 PP

  == domain 2  score: 1.3 bits;  conditional E-value: 0.096
                 EEE-TT-EE-TT-E..E....S.EEE-TT- CS
   Hexapep_2   2 viIGdnCliGanag..i....G.vslGdnc 24 
                 ++IGd  + G ++   i    G +slGd++
  KOO22285.1 491 TSIGDGAFYGCSSLtsIalpaGlTSLGDGA 520
                 689999999999985546766688888875 PP

  == domain 3  score: 0.3 bits;  conditional E-value: 0.2
                 EEE-TT-EE-TT-EESE CS
   Hexapep_2   2 viIGdnCliGanagiGv 18 
                 ++IGd  + G ++ + +
  KOO22285.1 537 TSIGDGAFYGCSSMTSI 553
                 68999999998888533 PP

  == domain 4  score: -1.8 bits;  conditional E-value: 0.95
                 EEE-TT-EE-TT-EESE CS
   Hexapep_2   2 viIGdnCliGanagiGv 18 
                 ++IG+  + G ++ + +
  KOO22285.1 606 TSIGEHAFYGCSSMTSI 622
                 69****99998887766 PP

  == domain 5  score: 4.2 bits;  conditional E-value: 0.012
                 EEE-TT-EE-TT-EESEEE CS
   Hexapep_2   2 viIGdnCliGanagiGvsl 20 
                 ++IGd +++G ++ + ++l
  KOO22285.1 629 TSIGDSTFLGCFSMMSIEL 647
                 69***********998876 PP

>> DUF2240  Uncharacterized protein conserved in archaea (DUF2240)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.3   0.0      0.25   7.5e+02      40      73 ..     502     535 ..     500     542 .. 0.91
   2 ?   -2.3   0.0       1.1   3.2e+03      41      74 ..     549     582 ..     546     597 .. 0.82
   3 ?    7.5   0.0   0.00097       2.9      41      97 ..     618     670 ..     615     678 .. 0.81

  Alignments for each domain:
  == domain 1  score: -0.3 bits;  conditional E-value: 0.25
     DUF2240  40 kklldraeeegLlekkdgdlvpnfdvaeveiPlg 73 
                 ++l ++a  +gL +  dg+     +++++e+P+g
  KOO22285.1 502 SSLTSIALPAGLTSLGDGAFQGCSSMRSIELPAG 535
                 679999**************************98 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 1.1
     DUF2240  41 klldraeeegLlekkdgdlvpnfdvaeveiPlgF 74 
                 ++ ++a  +gL +  +g+     +++++e+P+g 
  KOO22285.1 549 SMTSIALPAGLTSLGEGAFNGCSSMTSIELPAGL 582
                 6778899999999999999999999999999986 PP

  == domain 3  score: 7.5 bits;  conditional E-value: 0.00097
     DUF2240  41 klldraeeegLlekkdgdlvpnfdvaeveiPlgFkpdeellkekstferildaiaas 97 
                 ++ ++a  +gL +  d      f++ ++e+P+gF  de++l   s+++++++ ++++
  KOO22285.1 618 SMTSIALPAGLTSIGDSTFLGCFSMMSIELPAGF--DESIL--SSPMQQLMQQLMQQ 670
                 678899999*****99999999************..67899..66677776666554 PP

>> Forkhead_N  Forkhead N-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.2  11.3      0.18   5.3e+02      15      81 ..     473     555 ..     306     569 .. 0.68
   2 ?    0.4  12.7      0.32   9.5e+02      16      85 ..     548     605 ..     522     678 .. 0.49

  Alignments for each domain:
  == domain 1  score: 1.2 bits;  conditional E-value: 0.18
                 X.....XXXXXXXXXXXXXXXXXXXX..........XXXXXXXXXX....XXXXX.XXXXXXXXX.XXXXXX..XXXXXXXXXX CS
  Forkhead_N  15 n.....ysmnsMstyvamnssqasat..........ssanmngyagaaamngmssssmtgmssgyasagspl..gmmgmssmss 81 
                 +      sm s+ ++++++s+  +a+          + a+  ++ g +a+ g ss+    +++g++s+g ++  g+++m+s++ 
  KOO22285.1 473 QafydcSSMRSIELPAGLTSIGDGAFygcssltsiaLPAGL-TSLGDGAFQGCSSMRSIELPAGLTSIGDGAfyGCSSMTSIAL 555
                 03333345555555555555522222455555555333333.555666666666666666666666666666666666666654 PP

  == domain 2  score: 0.4 bits;  conditional E-value: 0.32
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXX....XXXXX.XXXXXXXXX.XXXXXX..XXXXXXXXXXXXXX CS
  Forkhead_N  16 ysmnsMstyvamnssqasatssanmngyagaaamngmssssmtgmssgyasagspl..gmmgmssmssslsp 85 
                  sm+s+ ++++++s               g +a+ng ss++   +++g++s g+++  ++++m+s+   +++
  KOO22285.1 548 SSMTSIALPAGLTSL--------------GEGAFNGCSSMTSIELPAGLTSLGESAfaRCSSMTSIELPAGL 605
                 334444444444444..............3333333333333333333333333333322222222211111 PP

>> Peptidase_M8  Leishmanolysin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.0      0.33     1e+03     485     518 ..     355     388 ..     340     396 .. 0.82
   2 ?    1.4   0.1     0.033        99     483     519 ..     399     435 ..     386     440 .. 0.88
   3 ?    0.5   0.1      0.06   1.8e+02     483     518 ..     445     480 ..     430     485 .. 0.80
   4 ?    1.5   0.1     0.031        93     483     517 ..     468     502 ..     445     509 .. 0.62
   5 ?   -1.8   0.1      0.31   9.3e+02     484     519 ..     515     550 ..     496     560 .. 0.84
   6 ?   -1.4   0.0      0.24   7.1e+02     485     517 ..     539     571 ..     517     584 .. 0.71
   7 ?    0.3   0.1     0.072   2.2e+02     484     519 ..     584     619 ..     570     625 .. 0.86

  Alignments for each domain:
  == domain 1  score: -1.9 bits;  conditional E-value: 0.33
  Peptidase_M8 485 ygssgyvaCteGesvelatvsaafveggyivCpa 518
                    g+s+++ C+   s+el++ ++++   ++  C+ 
    KOO22285.1 355 IGGSAFARCSSMTSIELPAGLTSISRFAFAGCSS 388
                   6899**************9998877777666665 PP

  == domain 2  score: 1.4 bits;  conditional E-value: 0.033
  Peptidase_M8 483 qvygssgyvaCteGesvelatvsaafveggyivCpay 519
                   +  g+ +++ C+  +s+el++ ++++ e+++  C+  
    KOO22285.1 399 RSIGEHAFYGCSSMRSIELPAGLTSIGERAFTHCSSM 435
                   567899************************9999875 PP

  == domain 3  score: 0.5 bits;  conditional E-value: 0.06
  Peptidase_M8 483 qvygssgyvaCteGesvelatvsaafveggyivCpa 518
                      g+s+++ C+   s+el++ ++++ e+++  C+ 
    KOO22285.1 445 TSIGESAFARCSSMTSIELPAGLTSIGEQAFYDCSS 480
                   56799******************9999999988876 PP

  == domain 4  score: 1.5 bits;  conditional E-value: 0.031
  Peptidase_M8 483 qvygssgyvaCteGesvelatvsaafveggyivCp 517
                      g++++++C+  +s+el++ ++++  g++  C+
    KOO22285.1 468 TSIGEQAFYDCSSMRSIELPAGLTSIGDGAFYGCS 502
                   34566777777777777777777776666666665 PP

  == domain 5  score: -1.8 bits;  conditional E-value: 0.31
  Peptidase_M8 484 vygssgyvaCteGesvelatvsaafveggyivCpay 519
                    +g+ ++  C+  +s+el++ ++++  g++  C+  
    KOO22285.1 515 SLGDGAFQGCSSMRSIELPAGLTSIGDGAFYGCSSM 550
                   568889999999999999999999999888888765 PP

  == domain 6  score: -1.4 bits;  conditional E-value: 0.24
  Peptidase_M8 485 ygssgyvaCteGesvelatvsaafveggyivCp 517
                    g+ +++ C+   s+ l++ ++++ eg++  C+
    KOO22285.1 539 IGDGAFYGCSSMTSIALPAGLTSLGEGAFNGCS 571
                   567777777777777777777777777776665 PP

  == domain 7  score: 0.3 bits;  conditional E-value: 0.072
  Peptidase_M8 484 vygssgyvaCteGesvelatvsaafveggyivCpay 519
                    +g+s+++ C+   s+el++ ++++ e ++  C+  
    KOO22285.1 584 SLGESAFARCSSMTSIELPAGLTSIGEHAFYGCSSM 619
                   5799******************99999999888765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (680 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       315  (0.0175693); expected 358.6 (0.02)
Passed bias filter:                      270  (0.0150594); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.64u 0.26s 00:00:00.90 Elapsed: 00:00:00.42
# Mc/sec: 4886.40
//
Query:       KOO22286.1  [L=389]
Description: hypothetical protein Ctob_005714 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.12   12.4   5.4       0.27   11.4   5.4    1.5  1  Shadoo    Shadow of prion protein, neuroprotective


Domain annotation for each model (and alignments):
>> Shadoo  Shadow of prion protein, neuroprotective
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   5.4   1.5e-05      0.27       4      50 ..     276     323 ..     273     328 .. 0.79

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 1.5e-05
      Shadoo   4 saakggrggargsargglrggargasrvrvrpaprysaag.sslrvaa 50 
                 s+  g r gar  ar g r+gar  +   + p+  y aa  s + v a
  KOO22286.1 276 SSRSGARSGARSGARSGARSGARSGAGAPLPPTILYIAADnSEVAVRA 323
                 566799999999999999****99999999999999776514455544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (389 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       445  (0.0248201); expected 358.6 (0.02)
Passed bias filter:                      353  (0.0196888); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.23s 00:00:00.68 Elapsed: 00:00:00.37
# Mc/sec: 3139.96
//
Query:       KOO22287.1  [L=542]
Description: hypothetical protein Ctob_005716 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.2e-33  116.6   0.0    1.7e-33  116.1   0.0    1.2  1  Pkinase      Protein kinase domain
    4.1e-28   98.4   0.0      6e-28   97.8   0.0    1.2  1  Pkinase_Tyr  Protein tyrosine kinase
     0.0017   17.7   0.0     0.0024   17.2   0.0    1.1  1  Kinase-like  Kinase-like


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  116.1   0.0   2.8e-37   1.7e-33      95     261 ..       9     168 ..       4     171 .. 0.89

  Alignments for each domain:
  == domain 1  score: 116.1 bits;  conditional E-value: 2.8e-37
                 --HHHHHHHHHHHHHHHHHHHHTTEE-SS-SGGGEEEETTTEEEE-SGTTSEESSSSCS....BCTTTSCGGGS-HHHH.TTSCBSHHHHHHHHHHHHH CS
     Pkinase  95 lseeeakkiakqilegleylHskgiiHrDlKpeNiLidekgelKitDFGlakelesssk....ltsfvgtseYlAPEvl.keneyskkvDvWslGvily 188
                 ++e+ a  +++++ +gl+y+H++g +Hr lK++ iLid +g+++++DFG+++ l ++ +    +t+fvg++ ++APEvl ++++y++++D+Ws G++ +
  KOO22287.1   9 FEETPALVVLREVGRGLAYMHKHGTLHRNLKSSSILIDAEGDVRLADFGFSTSLYRGGElrskATTFVGSHGWMAPEVLeQASGYDAAADIWSFGITAI 107
                 6777888899***********************************************999999****************989***************** PP

                 HHHHSS-STTTSSHHHHHHHHHHTHHHHHHHCTSHH...H.HHTTS-HHHHHHHHHHT-SSGCCSTTHHHHHTS CS
     Pkinase 189 elltgkppfsgekgkekvekeldqlekilkilgetkeklp.easeiseeakdllkkllkkdpkkRltaeellqh 261
                 el+ g  p++           +  l+ +l++l+    + p  a+  s+ +k+l+  +++ +p+ R+ta+ ll  
  KOO22287.1 108 ELTRGAAPYA----------GMAPLKVMLRVLHS---DPPiPAEAASSGFKELVAACVQHEPTGRPTASRLLTR 168
                 **********..........45555566677743...3440455669*********************999875 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   97.8   0.0     1e-31     6e-28     106     256 ..      15     166 ..       8     169 .. 0.91

  Alignments for each domain:
  == domain 1  score: 97.8 bits;  conditional E-value: 1e-31
                  HHHHHHHHHHHHHHHHTTEEEST-SGGGEEEEETTEEEE-STTTHEETTTSSEEEETTSSTS.GGGGS-HHHHHHSE.EEHHHHHHHHHHHHHHHHTT CS
  Pkinase_Tyr 106 lsfalqvAkGmeyLeskklvHrdlaarNvLlsenkvvkisDfGLardiekddeyvkkeeakl.pvkWmapEslkekk.ftsksDvWsfGvllwEiftl 201
                  l +  +v +G++y++++  +Hr+l +  +L++ +  v+++DfG + ++++  e ++k ++ + +  WmapE+l++ + +  ++D+WsfG++ +E+   
   KOO22287.1  15 LVVLREVGRGLAYMHKHGTLHRNLKSSSILIDAEGDVRLADFGFSTSLYRGGELRSKATTFVgSHGWMAPEVLEQASgYDAAADIWSFGITAIELTR- 111
                  567789*********************************************999888877752678*******99888****************987. PP

                  SSGTTTTSHHHHHHHHHHTTEES-BBTTSBHHHHHHHHHHT-SSGGGS--HHHHH CS
  Pkinase_Tyr 202 gespypglkneevleklkegkrlekpekcpeelyelmkkcweedpeeRptfselv 256
                  g+ py+g+ + +v+ ++ ++      e +++ ++el+  c +++p+ Rpt s+l+
   KOO22287.1 112 GAAPYAGMAPLKVMLRVLHSDPPIPAEAASSGFKELVAACVQHEPTGRPTASRLL 166
                  ********999999999777777777789*********************99886 PP

>> Kinase-like  Kinase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   0.0     4e-07    0.0024     157     252 ..      25     118 ..      10     125 .. 0.82

  Alignments for each domain:
  == domain 1  score: 17.2 bits;  conditional E-value: 4e-07
  Kinase-like 157 aanLqakglvhgkftvdnllldekgglmlggf...taLvragtkvvlseve...kgfaPpEllgsrggytrknktkmthkldaWqlGlviyriwclkl 248
                   a+++++g +h ++++ ++l d +g + l +f   t+L+r g+    +++    +g+  pE+l ++ gy          + d W  G+++  +    +
   KOO22287.1  25 LAYMHKHGTLHRNLKSSSILIDAEGDVRLADFgfsTSLYRGGELRSKATTFvgsHGWMAPEVLEQASGYDA--------AADIWSFGITAIELTRGAA 114
                  699****************************966679***9997665554467899*********999877........7788888888877766666 PP

  Kinase-like 249 Pltl 252
                  P   
   KOO22287.1 115 PYAG 118
                  6655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (542 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       487  (0.0271627); expected 358.6 (0.02)
Passed bias filter:                      197  (0.0109878); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.48u 0.23s 00:00:00.71 Elapsed: 00:00:00.38
# Mc/sec: 4282.65
//
Query:       KOO22288.1  [L=697]
Description: phosphoribosylformylglycinamidine synthase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.1e-99  332.8   0.0    1.6e-99  332.2   0.0    1.3  1  GATase_5  CobB/CobQ-like glutamine amidotransferase domain
    1.2e-14   54.7   0.6      2e-14   54.0   0.6    1.4  1  AIRS_C    AIR synthase related protein, C-terminal domain


Domain annotation for each model (and alignments):
>> GATase_5  CobB/CobQ-like glutamine amidotransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  332.2   0.0  1.8e-103   1.6e-99       2     260 .]     429     692 ..     428     692 .. 0.95

  Alignments for each domain:
  == domain 1  score: 332.2 bits;  conditional E-value: 1.8e-103
    GATase_5   2 pkvailreeGvngeyemaaafekaGfeavdvhmsdllegrvslddfqilalpGGfsygDelgsgkgwakslllneklrealekflnredtlaLGiCnGf 100
                 pkva++r+eG+ng++emaaa+++ G e +dv m dl+ g+vsl++f++++++GGfsy+D+lgs+kgwa +l++++++ ++le+f +r+dt++LG+CnG+
  KOO22288.1 429 PKVAVVRQEGSNGDREMAAALHAGGLEPWDVAMADLVCGAVSLERFRGIVFVGGFSYADVLGSAKGWAGVLKFHPSTWAQLETFGARPDTFSLGVCNGC 527
                 9************************************************************************************************** PP

    GATase_5 101 qlLvklglvpggeiee...aeksptltrNksgrfesrlvsvvvsekspsvflkgme..glslpvahGeGrfvfkseevlkeleangqvalrYvdeegkp 194
                 ql++ lg+vp   +     a ++p++++N+sgrfesr++sv v   spsv+lkgme  +l+++vahGeG+++f++++vl++ +a g+++lrYv+++++p
  KOO22288.1 528 QLMALLGWVPRAADGAvlpALEQPRFVHNQSGRFESRFSSVTV-LPSPSVLLKGMEgsSLGVWVAHGEGQAHFPHASVLDSAIADGLAPLRYVNDDNQP 625
                 **********95443323369********************76.8**********95567789************************************ PP

    GATase_5 195 teeyplNPNgSpegiagitspdGRvlalmpHpervveavqksiipeeeeee..vspwlrlFenavkyv 260
                 te+yp+NPNgS++gia+++s+dGR+la+mpHper+++++q++++pe e+ +   +pwl+lF+na+ ++
  KOO22288.1 626 TEAYPFNPNGSTQGIAALCSADGRHLAMMPHPERCFQTWQWPWMPE-EWAGlrSGPWLKLFQNARLFC 692
                 ******************************************9985.6775569**********9886 PP

>> AIRS_C  AIR synthase related protein, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.0   0.6   2.2e-18     2e-14       3     154 ..     211     358 ..     209     360 .. 0.83

  Alignments for each domain:
  == domain 1  score: 54.0 bits;  conditional E-value: 2.2e-18
                 TEEEEEEET....SSCTCCHHHHHHHCHHHCTSHTTTSEHHHHHHHHHHHHHHHHHHHHHTTECEEEE--TTHHHHHHHHHHHTTTEEEEEECGTHHHH CS
      AIRS_C   3 Gdvliltgs....lGlggagtslkrkileeeglddsavqlgdvlleptliyvkralaalkglvkaahDvTgGGLlgalaemapasgvgaeidldkvpif 97 
                 G +l+l+        lgg +++++ ++l +          +d++l+++   + +al ++ gl+ + hDv++GGLl +l ema+a++ g+ ++l+ ++  
  KOO22288.1 211 GSKLYLIDLanghKRLGGTALAHVYGQLGDTPP------DADAALLERGFVATQALVHK-GLILSGHDVSDGGLLITLLEMAFAGDRGFDVTLPMPQYA 302
                 566666666666688999997777777766654......48888888999999999997.**********************************88888 PP

                 HHHH.HHHHHHHCSTTTEEEEEEEHGGHHHHHHHHHHTTCCCEEEEEEEEESSSEEEE CS
      AIRS_C  98 dele.splemllsensGrllvavppeeadavlaileeeglpeaavIGevtakeelsvi 154
                 +e + +++ ++++e+ G l+v v+ ++++a+ a+++++++p +  +G+  a+++++v+
  KOO22288.1 303 EEGCkEAFRAAFAEEVG-LVVEVSLANSEALEAQMKAAEVP-CILLGTSQARKHVTVH 358
                 88888888888888888.66666666667***********7.*********9998876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (697 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       249  (0.0138881); expected 358.6 (0.02)
Passed bias filter:                      217  (0.0121033); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.54u 0.22s 00:00:00.76 Elapsed: 00:00:00.40
# Mc/sec: 5246.98
//
Query:       KOO22289.1  [L=812]
Description: hypothetical protein Ctob_005719, partial [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
  ------ inclusion threshold ------
      0.035   11.6   7.5      0.059   10.9   7.5    1.3  1  DUF3584         Protein of unknown function (DUF3584)
      0.067   13.0   4.7        0.2   11.5   4.7    1.8  1  SCAB_CC         Coiled-coil regions of plant-specific actin-b
       0.22   11.1   9.8       0.63    9.6   9.8    1.8  1  Filament        Intermediate filament protein
        2.1    6.9   4.6        4.1    5.9   4.6    1.3  1  AAA_13          AAA domain
        3.5    7.1   8.4       0.21   11.2   2.6    1.9  2  DUF572          Family of unknown function (DUF572)
        7.7    5.2   7.0        7.9    5.2   3.7    2.0  2  Fmp27_WPPW      RNA pol II promoter Fmp27 protein domain


Domain annotation for each model (and alignments):
>> DUF3584  Protein of unknown function (DUF3584)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   7.5     2e-05     0.059     304     497 ..     358     548 ..     340     569 .. 0.83

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 2e-05
     DUF3584 304 keaidelnqelsaakaklaakeselealeeqkkkyedadieklkadldqlpsirseleeleeeldaltekhqdvqekydrrkqkikeeleeeleklker 402
                  e+++el+ +l a++akla+++++ eal ++  +++d+ +e +  ++ q   +++e+  +++  +  +++++    +  r++++++e + ++++    r
  KOO22289.1 358 GEREAELQRRLAALQAKLAQQQADFEALLAS-TRHKDESLEAMLHEMTQ--TMQAEMGRANRMQETHEQEMRTARTAVARLEKEAQEARRAASAAAPTR 453
                 5788999999999999999999999999876.56899999988776655..688899999999999999999999999999999999999999999999 PP

     DUF3584 403 leaireekdrlkaaieealealesqlrkqleaqkeelneeekelesrlselklrldsatateEeleqieeadealekaqeelekaeaevealqae 497
                 +  + +e   l  +i e+l +l  +l+++l+a+   l++    ++ + + l   l++     E++ q+++a ea+ +a + + +  a+ +a+++ 
  KOO22289.1 454 AVSVHNEPGGLGDQIAEQLFKLPPALKAKLHAEDVMLEHGGDSVAAAPQLLLPALTHLHHLHEQNDQLAAASEAVTAAYSDAVRKLAASNAANSS 548
                 88888888888999999999999999999999999999999999999999999999999999999999999999999888777777776666665 PP

>> SCAB_CC  Coiled-coil regions of plant-specific actin-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   4.7   6.6e-05       0.2      54     157 ..     376     471 ..     362     480 .. 0.68

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 6.6e-05
     SCAB_CC  54 lqekaevkklasflkqasedakklveeersfaraeiesaraavqrveealeeeeksskaskkqdveelkeevqearrikmlhqPskvmdlenelkalre 152
                  q++a+ + l ++ +   e    + +e     +ae+  a     r++e  e+e     ++ +  v +l++e+qearr      P++++ ++ne   l +
  KOO22289.1 376 AQQQADFEALLASTRHKDESLEAMLHEMTQTMQAEMGRAN----RMQETHEQE----MRTARTAVARLEKEAQEARRAASAAAPTRAVSVHNEPGGLGD 466
                 5555555555555555555555555555555555554442....333333333....3333447999******************************99 PP

     SCAB_CC 153 qlaek 157
                 q+ae+
  KOO22289.1 467 QIAEQ 471
                 99987 PP

>> Filament  Intermediate filament protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   9.8   0.00021      0.63     227     286 ..     381     440 ..     351     442 .. 0.83

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 0.00021
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
    Filament 227 sleieleslkkqkasleaqlaeleerleaeleklqeklseleeelaeireemarqlreYq 286
                   e+ l+s +++ +slea l+e+ ++++ae+ +++++ +  e+e++++r  +ar  +e q
  KOO22289.1 381 DFEALLASTRHKDESLEAMLHEMTQTMQAEMGRANRMQETHEQEMRTARTAVARLEKEAQ 440
                 345568899999******************************************999876 PP

>> AAA_13  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.9   4.6    0.0014       4.1      88     178 ..     358     447 ..     353     458 .. 0.83

  Alignments for each domain:
  == domain 1  score: 5.9 bits;  conditional E-value: 0.0014
      AAA_13  88 Geesiekqekieklkkeikkleekleaaeaqlqkaekekkklekeledeawkkivkkknsalsealkglky.eekfkerllkelkkknrkaa 178
                 Ge ++e q++++ l+ ++++ ++  ea  a+ + +++ ++++ +e+++++++++    +++++e++++ ++  +++ +rl ke++++ r+a+
  KOO22289.1 358 GEREAELQRRLAALQAKLAQQQADFEALLASTRHKDESLEAMLHEMTQTMQAEM--GRANRMQETHEQEMRtARTAVARLEKEAQEARRAAS 447
                 89999*********************************************9999..557888877777555377777777778888765554 PP

>> DUF572  Family of unknown function (DUF572)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.3       1.6   4.7e+03     268     268 ..      72      72 ..      28     117 .. 0.39
   2 ?   11.2   2.6   6.9e-05      0.21     140     239 ..     359     452 ..     352     566 .. 0.70

  Alignments for each domain:
  == domain 1  score: -3.1 bits;  conditional E-value: 1.6
      DUF572 268 l 268
                 +
  KOO22289.1  72 M 72 
                 1 PP

  == domain 2  score: 11.2 bits;  conditional E-value: 6.9e-05
      DUF572 140 kkemealesLeeLqelnqrqakvdfdanlelrkefreekkereeeeedeealkekislekikllpedeedekkaklle.gkteslfasseesaksakkk 237
                 ++e+e++ +L  Lq ++  q++ df+a l+  ++  e  +++  e   ++ ++++++  + ++++e+ e+e++ +     + e+++++++++a++a++ 
  KOO22289.1 359 EREAELQRRLAALQ-AKLAQQQADFEALLASTRHKDESLEAMLHEM--TQTMQAEMG--RANRMQETHEQEMRTARTAvARLEKEAQEARRAASAAAP- 451
                 78999*********.7777789*******99997777777777764..777777773..577887877666655555534443333333333333322. PP

      DUF572 238 pt 239
                  t
  KOO22289.1 452 -T 452
                 .2 PP

>> Fmp27_WPPW  RNA pol II promoter Fmp27 protein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.2   3.7    0.0026       7.9     204     259 ..     369     428 ..     354     456 .. 0.61
   2 ?    0.6   0.1     0.068     2e+02     311     387 ..     684     763 ..     677     770 .. 0.60

  Alignments for each domain:
  == domain 1  score: 5.2 bits;  conditional E-value: 0.0026
  Fmp27_WPPW 204 e..deelkeeieelekeikelkeklefletlledlkeseesse..........eeeskskelsaasts 259
                    +++l+++  ++e  ++++++k e le++l+++++++++++          e        ++ +t+
  KOO22289.1 369 AalQAKLAQQQADFEALLASTRHKDESLEAMLHEMTQTMQAEMgranrmqethE--------QEMRTA 428
                 133667778888999999999999999999999999998876666544332211........111111 PP

  == domain 2  score: 0.6 bits;  conditional E-value: 0.068
  Fmp27_WPPW 311 gfvyymsrkavkfiedlveeqekskkkkske...keesseksssede...esneeleeriee..lledvkkaeefeaqnsylvrL 387
                 g +++ + kavk ++ l+ + ++ k  ++++   +   +  +  +     e++++  + +e   ll+     +      +++++L
  KOO22289.1 684 GASSARNAKAVKYVDTLLGRANRDKIPEEDArqaT---EYFEAAKAAnatEDHKTACSYFETsfLLNPK--LTTLISTANMHLKL 763
                 66777889**************9888766654331...3222222222335556666666664333322..34555555555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (812 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2047  (0.114173); expected 358.6 (0.02)
Passed bias filter:                      761  (0.0424452); expected 358.6 (0.02)
Passed Vit filter:                       125  (0.00697194); expected 17.9 (0.001)
Passed Fwd filter:                        17  (0.000948185); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.95u 0.29s 00:00:01.24 Elapsed: 00:00:00.44
# Mc/sec: 5548.24
//
Query:       KOO22290.1  [L=2620]
Description: legume lectin beta domain [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.1e-10   41.4   0.0    3.9e-05   23.3   0.0    2.4  2  Lectin_legB  Legume lectin domain
    3.9e-09   36.8   0.0    1.5e-08   34.9   0.0    1.8  2  Bact_lectin  Bacterial lectin
    4.7e-05   23.9   0.1       0.27   11.8   0.0    2.6  2  PLAT         PLAT/LH2 domain
  ------ inclusion threshold ------
      0.043   14.6   1.2        2.7    8.8   0.1    2.5  2  FIVAR        FIVAR domain


Domain annotation for each model (and alignments):
>> Lectin_legB  Legume lectin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.3   0.0   8.6e-09   3.9e-05      15     104 ..    2290    2375 ..    2284    2393 .. 0.75
   2 !   15.4   0.0   2.2e-06    0.0098     193     242 ..    2553    2606 ..    2538    2612 .. 0.67

  Alignments for each domain:
  == domain 1  score: 23.3 bits;  conditional E-value: 8.6e-09
  Lectin_legB   15 nltlegdAsvsasgllqLtn.ktsnssvGralYkkplkLwdkssgnvasFstsFvfaIsss.kssssgdGlAFflapspslpaa..sagqyLGL 104 
                    l  +g+A+v + g l+Lt+ ++  +  G a++++pl+  +        F+t+F+f I+++ + ++++dG+AF+l  +++  aa  ++g +LG+
   KOO22290.1 2290 ALVCTGEAEVWR-GTLELTPpRKGIGIAGGAWFHRPLTVAN-------GFETEFTFRITKPpNAQRGSDGFAFVLQRDERSVAAlgTSGIQLGF 2375
                   577889999996.******964445569***********94.......6*********6554666778*******9996444442344555554 PP

  == domain 2  score: 15.4 bits;  conditional E-value: 2.2e-06
  Lectin_legB  193 pllsykvdLskvl.pe....ekvyvGFSastgsvsveahyilsWsFsssepaeal 242 
                    l++ +++L++++ +      ++  GF+a tg+  + ah i+sWsF++ ++ +a+
   KOO22290.1 2553 ALINIEIELRDLFgQVedwdGTMIAGFTAGTGK-RAAAHAITSWSFHEVSEGKAA 2606
                   556666666666532111224699*********.66**********987544444 PP

>> Bact_lectin  Bacterial lectin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.9   0.0   3.3e-12   1.5e-08      22      99 ..    2303    2389 ..    2276    2442 .. 0.85
   2 ?   -1.4   0.0      0.45     2e+03     169     195 ..    2570    2596 ..    2549    2597 .. 0.84

  Alignments for each domain:
  == domain 1  score: 34.9 bits;  conditional E-value: 3.3e-12
                   EEEEE-SSTT-..EEEEEESSEEETTS-EEEEEEEE--..S...B.--EEEEEEEST-.....---SGGGTTTTTSTT-EEEEEE-S CS
  Bact_lectin   22 ivtltedkknq..aGavtlknkiDlskdFtlkgsvnlg..qsnaggaDGigFalqpgq.....lGssGgglGigglpnafgfklDty 99  
                   +++lt+  k+   aG +++  ++   + F+ ++++ +    + + g DG++F+lq ++     lG+sG +lG+ggl++++++++ t 
   KOO22290.1 2303 TLELTPPRKGIgiAGGAWFHRPLTVANGFETEFTFRITkpPNAQRGSDGFAFVLQRDErsvaaLGTSGIQLGFGGLTHSLAVQFATQ 2389
                   66677775443559*************************9667788**********77776667******************99775 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 0.45
                   ...SEEEEEEEEE-SSSB--EEEEEEE CS
  Bact_lectin  169 kgktyvafgiaastGgatnlqqvkits 195 
                   + + ++  g++a+tG++ + ++++  s
   KOO22290.1 2570 DWDGTMIAGFTAGTGKRAAAHAITSWS 2596
                   55678999**********999998665 PP

>> PLAT  PLAT/LH2 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.3   0.0   0.00037       1.7      38      87 ..    1794    1845 ..    1767    1853 .. 0.76
   2 !   11.8   0.0   6.1e-05      0.27      63     107 ..    1983    2024 ..    1974    2030 .. 0.82

  Alignments for each domain:
  == domain 1  score: 9.3 bits;  conditional E-value: 0.00037
                  E.TTSEEETTT-EEEEEEEESS-ECSEEEEEEEEECSSS.S-EEEEEEEEEE CS
        PLAT   38 d.tsgpdfergatdsFkvdtdvdlGallkinlhwensgv.sdewflksitve 87  
                    + g+ f  g  d F+v +d dlG++  ++l   + ++ +++w+++++ v 
  KOO22290.1 1794 SkNEGGLFREGCVDIFRVEFDRDLGEIFGVELQTAGLANdRSKWYVDKVVVS 1845
                  2266778899999*********************765557778*******94 PP

  == domain 2  score: 11.8 bits;  conditional E-value: 6.1e-05
                  EEEEEEEEECSSSS-EEEEEEEEEEEETTTSSEEEEEEEEEEETG CS
        PLAT   63 llkinlhwensgvsdewflksitvekpgetgqkvtFpcnswvdns 107 
                  ++ ++++++++g  ++ fl+s+t+   ++ +  ++Fpc++w+d++
  KOO22290.1 1983 IHSVEVTHTGKG--SPIFLDSLTL-WCQHSDELYHFPCYEWLDEN 2024
                  788999998766..9*********.567788899********994 PP

>> FIVAR  FIVAR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.1   0.2     0.018        82      26      48 ..     896     918 ..     894     924 .. 0.78
   2 ?    8.8   0.1   0.00059       2.7      26      69 ..    1397    1441 ..    1393    1443 .. 0.93

  Alignments for each domain:
  == domain 1  score: 4.1 bits;  conditional E-value: 0.018
                 CCHHHHHHHHHHHHHHHC...TS CS
       FIVAR  26 qdkkdaynnalsaAnailnktnn 48 
                 ++ ++a+ +a+++A+ +l + + 
  KOO22290.1 896 TNEQTALRQAIKKAERVLTEAQS 918
                 56789*************66554 PP

  == domain 2  score: 8.8 bits;  conditional E-value: 0.00059
                  CCHHHHHHHHHHHHHHHC....TSTTTTCCCHHHHHHHHHHHHHH CS
       FIVAR   26 qdkkdaynnalsaAnailnkt.nnpnatveqVnqalanlnqaina 69  
                  +++kd+y++ lsa +  l ++  +++a  ++V++ +a+l++a ++
  KOO22290.1 1397 ETIKDTYDDQLSALQPSLTPVdRGEEALATEVDKLVARLQTAHQE 1441
                  5789*****************99999****************997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (2620 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       564  (0.0314574); expected 358.6 (0.02)
Passed bias filter:                      485  (0.0270511); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 1.22u 0.31s 00:00:01.53 Elapsed: 00:00:00.49
# Mc/sec: 15938.71
//
Query:       KOO22291.1  [L=172]
Description: hypothetical protein Ctob_003690 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
  ------ inclusion threshold ------
       0.37   10.3   2.6       0.48    9.9   2.6    1.1  1  HGTP_anticodon2  Anticodon binding domain of tRNAs
       0.49   10.9   5.7       0.94   10.0   5.4    1.6  1  Caskin-Pro-rich  Proline rich region of Caskin proteins
        5.3    7.9   7.3        7.8    7.4   5.8    2.1  3  PDGF_N           Platelet-derived growth factor, N terminal r


Domain annotation for each model (and alignments):
>> HGTP_anticodon2  Anticodon binding domain of tRNAs
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   2.6   8.1e-05      0.48      96     180 ..      14      97 ..       4     112 .. 0.66

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 8.1e-05
  HGTP_anticodon2  96 vswlkqeirerekereesaksskssaessqkedeassesseeleealaskeerqkevrvlvaatrskksnkrekveq.ddAqeaaa 180
                       +w+ q  r r  + ++sa++s++++e +++  ++s+++s+++ee  +++++ ++   v+ aa+    +n+ ++ve+  +A + a+
       KOO22291.1  14 QAWVAQAQRRRMGSAHHSANRSSTVEEGANA--HHSANRSSTVEEGANAHHSANRSSIVEEAANAHHCANRSSVVEKgVNANTPAK 97 
                      4566666666654444444444444444443..33334566666566666778888889999999999999999999888877665 PP

>> Caskin-Pro-rich  Proline rich region of Caskin proteins
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   5.4   0.00016      0.94       6      84 ..      30     107 ..      21     112 .. 0.77

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.00016
  Caskin-Pro-rich   6 qslnRyalsdgeadeeeeealssaelgsYatltrrpgRsqlvraqaaaeknvnRsqsfavRarkkGPPPPPPkRlssvs 84 
                      +s nR +  +  a+ ++++ ++s+++ + a   + + Rs +v++ a+a++ +nRs           P   PPkR+s  s
       KOO22291.1  30 HSANRSSTVEEGANAHHSA-NRSSTVEEGANAHHSANRSSIVEEAANAHHCANRSSVVEKGVNANTPAKKPPKRVSFSS 107
                      5666655544333333333.4589999999*************************9999999999*********99544 PP

>> PDGF_N  Platelet-derived growth factor, N terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.6   1.4    0.0096        57      44      76 ..      26      58 ..       9      60 .. 0.61
   2 ?    7.4   5.8    0.0013       7.8      39      78 ..      37      76 ..      23      77 .. 0.69
   3 ?    3.9   0.7     0.016        96      64      78 ..      62      76 ..      58      92 .. 0.41

  Alignments for each domain:
  == domain 1  score: 4.6 bits;  conditional E-value: 0.0096
      PDGF_N 44 khrakkkhsaeslelkssqlhsrrkrsvveeAv 76
                   +++ ++++++e+  +  hs  + s vee  
  KOO22291.1 26 GSAHHSANRSSTVEEGANAHHSANRSSTVEEGA 58
                334455555555777777777777777899965 PP

  == domain 2  score: 7.4 bits;  conditional E-value: 0.0013
      PDGF_N 39 eseeskhrakkkhsaeslelkssqlhsrrkrsvveeAvPA 78
                + ee  + +++ ++++++e+  +  hs  + s+veeA  A
  KOO22291.1 37 TVEEGANAHHSANRSSTVEEGANAHHSANRSSIVEEAANA 76
                33445556666666677778888888888888*****877 PP

  == domain 3  score: 3.9 bits;  conditional E-value: 0.016
      PDGF_N 64 hsrrkrsvveeAvPA 78
                hs  + s+veeA  A
  KOO22291.1 62 HSANRSSIVEEAANA 76
                233333344444333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (172 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       675  (0.0376485); expected 358.6 (0.02)
Passed bias filter:                      312  (0.017402); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.41u 0.26s 00:00:00.67 Elapsed: 00:00:00.41
# Mc/sec: 1245.91
//
Query:       KOO22292.1  [L=162]
Description: hypothetical protein Ctob_003696 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (162 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       889  (0.0495845); expected 358.6 (0.02)
Passed bias filter:                      422  (0.0235373); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.39u 0.24s 00:00:00.63 Elapsed: 00:00:00.38
# Mc/sec: 1275.94
//
Query:       KOO22293.1  [L=235]
Description: hypothetical protein Ctob_003697 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (235 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       663  (0.0369792); expected 358.6 (0.02)
Passed bias filter:                      259  (0.0144459); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.40u 0.21s 00:00:00.61 Elapsed: 00:00:00.36
# Mc/sec: 1947.41
//
Query:       KOO22294.1  [L=515]
Description: hypothetical protein Ctob_003694 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.5e-11   43.0   0.3      4e-05   22.9   0.2    2.7  2  EF-hand_1   EF hand
    4.1e-11   41.9   0.0    0.00011   21.8   0.0    3.1  3  EF-hand_6   EF-hand domain
    4.4e-11   41.8   1.4    2.5e-05   23.6   0.0    2.6  2  EF-hand_5   EF hand
    1.9e-09   37.8   0.0    6.4e-08   32.9   0.1    2.7  2  EF-hand_7   EF-hand domain pair
    6.6e-08   32.3   0.3      0.006   16.4   0.4    2.6  2  EF-hand_8   EF-hand domain pair
    0.00037   20.4   0.0     0.0013   18.7   0.0    2.0  1  EF-hand_4   Cytoskeletal-regulatory complex EF hand
  ------ inclusion threshold ------
       0.17   11.7   1.2        1.9    8.4   0.1    2.7  3  EF-hand_10  EF hand


Domain annotation for each model (and alignments):
>> EF-hand_1  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5   0.0   8.1e-07    0.0021       4      28 ..     454     478 ..     452     479 .. 0.93
   2 !   22.9   0.2   1.6e-08     4e-05       4      28 ..     489     513 ..     486     514 .. 0.90

  Alignments for each domain:
  == domain 1  score: 17.5 bits;  conditional E-value: 8.1e-07
                 HHHHHHTTTSSSEEEHHHHHHHHHH CS
   EF-hand_1   4 eiFrefDkDgdGkIdfeEfkellkk 28 
                  +F+++D D +G+I++ E+ e+lk+
  KOO22294.1 454 AAFKKIDADDSGTISKRELYEVLKT 478
                 59*******************9986 PP

  == domain 2  score: 22.9 bits;  conditional E-value: 1.6e-08
                 HHHHHHTTTSSSEEEHHHHHHHHHH CS
   EF-hand_1   4 eiFrefDkDgdGkIdfeEfkellkk 28 
                 e+F+ +D D+dG+++feEf ++ k+
  KOO22294.1 489 EVFKGADADNDGQLNFEEFEKIAKA 513
                 89*****************998775 PP

>> EF-hand_6  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.0       1.8   4.5e+03       2      27 ..     387     412 ..     386     416 .. 0.74
   2 !   21.8   0.0   4.3e-08   0.00011       3      28 ..     453     478 ..     451     484 .. 0.89
   3 !   16.4   0.1   2.4e-06    0.0063       3      27 ..     488     512 ..     486     514 .. 0.90

  Alignments for each domain:
  == domain 1  score: -1.9 bits;  conditional E-value: 1.8
   EF-hand_6   2 lreaFklfDkdgdGkidaeElrkalr 27 
                 l+++ + +D  g G++  ++++k l+
  KOO22294.1 387 LKALLQRLDPAGAGEVPLAQMKKTLT 412
                 66677778888888888888888887 PP

  == domain 2  score: 21.8 bits;  conditional E-value: 4.3e-08
   EF-hand_6   3 reaFklfDkdgdGkidaeElrkalrk 28 
                  +aFk++D d++G+i++ El  +l++
  KOO22294.1 453 VAAFKKIDADDSGTISKRELYEVLKT 478
                 579*********************96 PP

  == domain 3  score: 16.4 bits;  conditional E-value: 2.4e-06
   EF-hand_6   3 reaFklfDkdgdGkidaeElrkalr 27 
                  e+Fk  D d+dG++++eE+ k+ +
  KOO22294.1 488 LEVFKGADADNDGQLNFEEFEKIAK 512
                 589*****************99865 PP

>> EF-hand_5  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.6   0.0   9.7e-09   2.5e-05       3      24 ..     454     475 ..     453     476 .. 0.91
   2 !   16.2   0.5   2.1e-06    0.0054       4      23 ..     490     509 ..     488     511 .. 0.89

  Alignments for each domain:
  == domain 1  score: 23.6 bits;  conditional E-value: 9.7e-09
                 HHHHHH-SS-SSCE-HHHHHHH CS
   EF-hand_5   3 dtFqaiDlNgDGkIskeELktl 24 
                 ++F++iD++ +G+Isk EL+++
  KOO22294.1 454 AAFKKIDADDSGTISKRELYEV 475
                 67******************97 PP

  == domain 2  score: 16.2 bits;  conditional E-value: 2.1e-06
                 HHHHH-SS-SSCE-HHHHHH CS
   EF-hand_5   4 tFqaiDlNgDGkIskeELkt 23 
                 +F+ +D+++DG++++eE+++
  KOO22294.1 490 VFKGADADNDGQLNFEEFEK 509
                 68889*************98 PP

>> EF-hand_7  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.7   0.0      0.14   3.5e+02      36      67 ..     377     408 ..     330     412 .. 0.74
   2 !   32.9   0.1   2.5e-11   6.4e-08       7      70 ..     455     511 ..     450     512 .. 0.85

  Alignments for each domain:
  == domain 1  score: 1.7 bits;  conditional E-value: 0.14
   EF-hand_7  36 gegsklsdeelellfkefDtdkdGvisfdEFl 67 
                  e  +++  el++l++ +D  + G++ +  ++
  KOO22294.1 377 TERREVHNPELKALLQRLDPAGAGEVPLAQMK 408
                 4445557789************9999988776 PP

  == domain 2  score: 32.9 bits;  conditional E-value: 2.5e-11
   EF-hand_7   7 aFkelDtdgdgyldkeellrllrkifqgagegsklsdeelellfkefDtdkdGvisfdEFlkly 70 
                 aFk++D d++g ++k+el ++l+        g +   ++  ++fk  D d+dG+++f+EF+k+ 
  KOO22294.1 455 AFKKIDADDSGTISKRELYEVLKT------AGLS-NGKQALEVFKGADADNDGQLNFEEFEKIA 511
                 8****************9989995......3333.4566789*******************986 PP

>> EF-hand_8  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.3   0.0   1.1e-05     0.028      19      53 ..     444     477 ..     429     479 .. 0.81
   2 !   16.4   0.4   2.3e-06     0.006      22      48 ..     480     507 ..     471     509 .. 0.78

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 1.1e-05
   EF-hand_8  19 lkkglseee.vdilfrefDtdgdGkisfeEFcvlle 53 
                 l+  ls +e + + f+++D d++G+is+ E +++l+
  KOO22294.1 444 LQ--LSRYErAVAAFKKIDADDSGTISKRELYEVLK 477
                 34..99999999******************998876 PP

  == domain 2  score: 16.4 bits;  conditional E-value: 2.3e-06
   EF-hand_8  22 glseee.vdilfrefDtdgdGkisfeEF 48 
                 gls+ + + ++f+ +D d+dG ++feEF
  KOO22294.1 480 GLSNGKqALEVFKGADADNDGQLNFEEF 507
                 46666667789****************9 PP

>> EF-hand_4  Cytoskeletal-regulatory complex EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.7   0.0     5e-07    0.0013      16      67 ..     456     509 ..     441     515 .] 0.77

  Alignments for each domain:
  == domain 1  score: 18.7 bits;  conditional E-value: 5e-07
   EF-hand_4  16 fsglkped.nkltgdkvapvlknskleedk.lekiwdladidedgkldfeefci 67 
                 f+ ++ +d  ++++ ++  vlk + l++ k   ++++ ad d+dg+l+feef  
  KOO22294.1 456 FKKIDADDsGTISKRELYEVLKTAGLSNGKqALEVFKGADADNDGQLNFEEFEK 509
                 555554431578999999********98651568******************65 PP

>> EF-hand_10  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.7   0.1       4.6   1.2e+04       6      13 ..     386     393 ..     385     394 .. 0.85
   2 ?    0.8   0.0      0.17   4.4e+02      23      45 ..     452     474 ..     449     478 .. 0.83
   3 ?    8.4   0.1   0.00075       1.9      23      46 ..     487     510 ..     483     514 .. 0.88

  Alignments for each domain:
  == domain 1  score: -3.7 bits;  conditional E-value: 4.6
  EF-hand_10   6 EvkrlLre 13 
                 E+k lL+ 
  KOO22294.1 386 ELKALLQR 393
                 99****96 PP

  == domain 2  score: 0.8 bits;  conditional E-value: 0.17
  EF-hand_10  23 AekLFkkcDkSksgrLegeEiee 45 
                 A   Fkk D   sg++   E+ e
  KOO22294.1 452 AVAAFKKIDADDSGTISKRELYE 474
                 5567************9999876 PP

  == domain 3  score: 8.4 bits;  conditional E-value: 0.00075
  EF-hand_10  23 AekLFkkcDkSksgrLegeEieeF 46 
                 A ++Fk +D  ++g+L+ eE+e+ 
  KOO22294.1 487 ALEVFKGADADNDGQLNFEEFEKI 510
                 7899*****************985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (515 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      3953  (0.220481); expected 358.6 (0.02)
Passed bias filter:                      654  (0.0364772); expected 358.6 (0.02)
Passed Vit filter:                       245  (0.013665); expected 17.9 (0.001)
Passed Fwd filter:                        82  (0.0045736); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 1.76u 0.38s 00:00:02.14 Elapsed: 00:00:00.56
# Mc/sec: 2748.62
//
Query:       KOO22295.1  [L=344]
Description: hypothetical protein Ctob_003695 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.074   12.7   0.0       0.11   12.2   0.0    1.2  1  DUF5577   Family of unknown function (DUF5577)


Domain annotation for each model (and alignments):
>> DUF5577  Family of unknown function (DUF5577)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0     6e-06      0.11     124     172 ..      28      72 ..      19      96 .. 0.85

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 6e-06
     DUF5577 124 ekPtGvfsrlgrtleeeedkasdklsttvdsddddeegsvlqyaGvlkk 172
                 + P  vfsrl+ +++e+    +d     +d +d+de+g + qy   l +
  KOO22295.1  28 GTPPFVFSRLDDEEKEDLPDPAD----YLDDEDEDEDGGIAQYELRLHH 72 
                 56888********9999988888....78988889********766655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (344 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       284  (0.0158403); expected 358.6 (0.02)
Passed bias filter:                      238  (0.0132746); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.23s 00:00:00.68 Elapsed: 00:00:00.40
# Mc/sec: 2563.68
//
Query:       KOO22296.1  [L=3267]
Description: reverse transcriptase, partial [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    0.00028   21.5   0.3    0.00084   20.0   0.3    1.8  1  DUF4326   Domain of unknown function (DUF4326)
     0.0057   16.2   0.0     0.0099   15.4   0.0    1.3  1  RVT_1     Reverse transcriptase (RNA-dependent DNA polymerase


Domain annotation for each model (and alignments):
>> DUF4326  Domain of unknown function (DUF4326)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.0   0.3   9.3e-08   0.00084      17      83 .]    1411    1510 ..    1393    1510 .. 0.85

  Alignments for each domain:
  == domain 1  score: 20.0 bits;  conditional E-value: 9.3e-08
     DUF4326   17 RgsklgNpFvvgqe...lgereevvekyreyleer.............................aekdeelkaaleeLrgkeLa.CwCkpkpCHadv 80  
                  R+  lg pF++g +    + r+  +e yre+le+                              + + e l + + eL ++ +  C C+pk+CH   
  KOO22296.1 1411 RKGILGSPFRMGLDgrdENLRDLSCECYREWLETGgdayaiavakcfpiecvapghgricsadiEAEIESLVEIVVELDKRLVLeCGCAPKRCHLAC 1507
                  55579******9986667778889********99999***************999999999888777888999999999665546*********988 PP

     DUF4326   81 lle 83  
                  ++e
  KOO22296.1 1508 IAE 1510
                  875 PP

>> RVT_1  Reverse transcriptase (RNA-dependent DNA polymerase)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.0   1.1e-06    0.0099       1     170 [.    1746    1935 ..    1746    1967 .. 0.82

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 1.1e-06
                  EE-TT......S-EEE......-THHHHCTB--.........-------HHHH................HCCHTS--EEEEEEBCCGCCCSBB-GGG CS
       RVT_1    1 ipKkg.....pgsyRpisllsvdykalnkliakrLkdvlekllsenqpgfrpgrstldav...edllkalkkkkkaklllklDlkkaFdsvpleell 89  
                  ipK+g     ++++R i + s++ k++  +i     +v+  + +    gf+ gr++ ++    +  l+ + + ++  ++ + D + +F s++ + + 
  KOO22296.1 1746 IPKPGkdrckLSGWREIWIQSHLWKLVVGAILPECAEVFARTRPWCNAGFEAGRGCPEQSaalRARLELHMRLRQPLHVYFQDYSVFFPSISRQLVA 1842
                  799999999999999999999999999999988666666666677778***********999988889999************************** PP

                  GGGG-EEET.........................TEEEEESB--ST-TTHHHHHHHHHHHHHTT-T..................TEEECTTEE CS
       RVT_1   90 rkltafkvptklinliksflstrsfsvrvngeeskgryekkglpqGsvlSPllfnlfmnellrelrkra............kgvtllrYaDDi 170 
                    l++++v t  +++++++  +   +++  g  ++  +  +g p G+v SPl +  +   + r l++++                 l YaDD 
  KOO22296.1 1843 FILHELGVSTVSMQILREVQDQVMGAFKTAGGPTELAPMLRGEPIGGVESPLFSLPVAALVQRALETYVpgsplpdrrelrVAALQLWYADDG 1935
                  ********************99999999999999*****************755544444444444444666666665544333344566665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (3267 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       674  (0.0375927); expected 358.6 (0.02)
Passed bias filter:                      378  (0.0210832); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 1.31u 0.33s 00:00:01.64 Elapsed: 00:00:00.51
# Mc/sec: 19200.85
//
Query:       KOO22297.1  [L=1108]
Description: hypothetical protein Ctob_003689 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.012   15.3   1.0      0.033   13.9   0.4    2.1  2  YkyA      Putative cell-wall binding lipoprotein
          1    7.2   7.1          1    7.2   0.5    2.7  3  Prominin  Prominin


Domain annotation for each model (and alignments):
>> YkyA  Putative cell-wall binding lipoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.7   0.0      0.89   7.9e+03      62      87 ..     936     961 ..     934     965 .. 0.84
   2 ?   13.9   0.4   3.7e-06     0.033      74     165 ..     987    1084 ..     968    1096 .. 0.84

  Alignments for each domain:
  == domain 1  score: -3.7 bits;  conditional E-value: 0.89
        YkyA  62 nveeReellekekesieeakeefeki 87 
                 +v +R ++le   e + +a+  +ek+
  KOO22297.1 936 LVIARADHLELDDETMTAARLHLEKA 961
                 5668999*********9999888876 PP

  == domain 2  score: 13.9 bits;  conditional E-value: 3.7e-06
        YkyA   74 kesieeakeefekikeeieei......edeelkkeaeelieameeryeaydklykaYkealeldkeLYemLkkeeltleeleeqiekiNesyeevke 164 
                   +si +a e+++++ +  + +      + e   ++a+el ++ ++  +a+d+ +k+  +a  + +e+ + +++e+++  el  +++++ ++ +e++e
  KOO22297.1  987 SDSIGKASEALTEAVKRGKAVlndesgNLEPCVTKAQELLDKCKQLHAAHDASHKRMAQASRAVEEMMKAFGTEDFDKAELGRRVDELSDAVDEARE 1083
                  4566666666666666655544433344566789*********************************************************999998 PP

        YkyA  165 a 165 
                  a
  KOO22297.1 1084 A 1084
                  7 PP

>> Prominin  Prominin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.3   0.0     0.022   1.9e+02     651     708 ..     752     811 ..     701     818 .. 0.79
   2 ?    7.2   0.5   0.00012         1     192     273 ..     823     902 ..     820     908 .. 0.88
   3 ?    2.0   0.3    0.0044        40     272     705 ..     997    1082 ..     962    1099 .. 0.55

  Alignments for each domain:
  == domain 1  score: -0.3 bits;  conditional E-value: 0.022
    Prominin 651 lkneaqdlraiqqelvlplessvkklkksvkklde..ensdlqesikkllaaveraenfl 708
                 + ++  ++r+i + + ++l+++    ++ ++kl +  ++  l ++ ++l aa+++a+nf 
  KOO22297.1 752 ILRKRATTRKIRESILQRLSAANGGCQSALEKLRRsrNADLLLDAAEELAAAIDEAQNFT 811
                 566778899999999999999999999999999998666668899999*********995 PP

  == domain 2  score: 7.2 bits;  conditional E-value: 0.00012
    Prominin 192 vpqhidhvlvqnyeelekhvsddLddagkhlgldladtlesnvlpaLaelerllenlkeakeqLeqvnklekeLrksgsqLr 273
                 + + i++v++   ++++++++ + + + +h+ ldl++t+++ +   ++el+++l    ea   L  v+++   L+ +++  +
  KOO22297.1 823 TLATIRAVAQR-LNTTKERLTRT-TAVATHVLLDLRSTSHQGLSTIIEELKSVLSVSDEALVPLADVERSRVALKATQTAHE 902
                 66788999999.89999777665.78899***********************************************998765 PP

  == domain 3  score: 2.0 bits;  conditional E-value: 0.0044
    Prominin  272 Lrdglrgvkrdlnqalsn..lCqseeCskilssleiekldtskcldqlpnvdevlealeevletnlssivkeglarlneipekvknqtaevvpdlkk 366 
                  L ++++  k  ln+   n   C                                                                           
  KOO22297.1  997 LTEAVKRGKAVLNDESGNlePC--------------------------------------------------------------------------- 1018
                  4444444444444333332223........................................................................... PP

    Prominin  367 alakgreqikklakkiprealdavisdlenterssktfddvvekyekyrwliglivcsllllivvililgLlcGilGlsrtatptdrgcskntGasf 463 
                                                                                                                   
  KOO22297.1    - -------------------------------------------------------------------------------------------------    -
                  ................................................................................................. PP

    Prominin  464 LlvgvglsFlffsllmlvvlltFlvGlnvyklvCeplesneLfrvlDtpgllpeldLsrllskklkknltisevikaCkanesifkvLrlnnlydie 560 
                                                                                                                   
  KOO22297.1    - -------------------------------------------------------------------------------------------------    -
                  ................................................................................................. PP

    Prominin  561 ellnikklteeiqkelenlkvdlsnlelLteeerkdLeklresglskihsslyleqlckkltkvnletlaekleelanelsngkknlkqslkneaqd 657 
                                                                                                       +  q+l  + ++
  KOO22297.1 1019 ------------------------------------------------------------------------------------VTKAQELLDKCKQ 1031
                  ....................................................................................3344555556666 PP

    Prominin  658 lraiqqelvlplessvkklkksvkklde...ensdlqesikkllaaverae 705 
                  l+a ++  ++++ ++ + +++ +k+  +   ++ +l++++++l +av++a 
  KOO22297.1 1032 LHAAHDASHKRMAQASRAVEEMMKAFGTedfDKAELGRRVDELSDAVDEAR 1082
                  666666666666655555555555555544466666666666666666654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1108 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1169  (0.0652016); expected 358.6 (0.02)
Passed bias filter:                      453  (0.0252663); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.81u 0.28s 00:00:01.09 Elapsed: 00:00:00.45
# Mc/sec: 7358.64
//
Query:       KOO22298.1  [L=482]
Description: udp-galactopyranose mutase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.6e-72  242.9   0.3    3.5e-72  242.4   0.3    1.2  1  GLF            UDP-galactopyranose mutase
    2.8e-16   59.5   0.1    4.9e-16   58.7   0.1    1.4  1  NAD_binding_8  NAD(P)-binding Rossmann-like domain
      0.004   16.5   0.0       0.06   12.7   0.0    2.1  2  FAD_oxidored   FAD dependent oxidoreductase
  ------ inclusion threshold ------
        0.1   11.6   0.0       0.15   11.1   0.0    1.2  1  Lycopene_cycl  Lycopene cyclase protein
       0.33   10.2   0.4       0.68    9.1   0.2    1.6  2  FAD_binding_3  FAD binding domain


Domain annotation for each model (and alignments):
>> GLF  UDP-galactopyranose mutase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  242.4   0.3   9.7e-76   3.5e-72       1     204 []     231     443 ..     231     443 .. 0.95

  Alignments for each domain:
  == domain 1  score: 242.4 bits;  conditional E-value: 9.7e-76
                 HHTHHHHHHHHTSSGGGSBGGGGCGS-B-SSS--BS--SSEEEEBTTHHHHHHHHHTT.STTEEEESS--HHHHHHHHHHTTEEEEEE-S-HHHHTTTT CS
         GLF   1 klfkgYtkKqWglkpeeldasvlkrvpvrlsyddrYfndkyqglPkeGYtklfekmld.henievrlntdffdvkeaeekeeakkvvytgpideyFdyk 98 
                 k+fk+YtkKqW+++p+eldasv+ r+p+r+++ddrYf dk+q+lPk+GYt++fe+ml  ++ni++rln+dff+ ++a +  e+  ++ytgpid+yF  +
  KOO22298.1 231 KIFKHYTKKQWDKYPSELDASVMLRLPCRTTTDDRYFGDKWQALPKRGYTRIFENMLLhDPNITIRLNCDFFQLRDAGKLPEHGLIIYTGPIDSYFAQQ 329
                 69******************************************************86378***********************************998 PP

                 .TS---EEEEEEEEEEE...SSS-SSSSSEEEESSTTSSSSEEEEGGGGCTC.......SSSSEEEEEEEEEE.STTS.--EE--SHHHHHHHHHHHHH CS
         GLF  99 .lgeLeYrsldfeketl...deekfqenavvnYpdeevpytrivEykhltkq.......kskktvivreypkeaeegdepyYpinteenrelyekYkel 186
                  +++LeYrs+ f++e +   ++  fqe++vvnYp+ +v++trivEykh+ +q       + k t++++e++   ++gd pyYp+++++n+elyekY++l
  KOO22298.1 330 gMPKLEYRSIIFKEEWVeepQDGFFQEAMVVNYPSPDVEFTRIVEYKHVINQptavkngQIKGTLLAKEFS--SATGD-PYYPVPNPKNNELYEKYRKL 425
                 89***********88773335678**************************9999998777899********..88899.******************** PP

                 HHHCTTEEE-HHHHTTS- CS
         GLF 187 akkeekvlfvGRLaeYkY 204
                 a++e++v fvGRLa+YkY
  KOO22298.1 426 AEAEPGVAFVGRLASYKY 443
                 *****************9 PP

>> NAD_binding_8  NAD(P)-binding Rossmann-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.7   0.1   1.4e-19   4.9e-16       1      67 [.      72     139 ..      72     140 .. 0.92

  Alignments for each domain:
  == domain 1  score: 58.7 bits;  conditional E-value: 1.4e-19
                    EE--SHHHHHHHHHHHCC.TEEEEEE-SSSSSSGGG-EECE.TT.CEECTS---EEETTHHHHCHHHHCC CS
  NAD_binding_8   1 IvGaGlsGlvaAylLaka.gfdvlllekrdrlGGraasyev.pg.vrvdygahifhgsgyypnvrrllre 67 
                    IvGaGlsG+v+A +++k+ g   l++++rd++GG++++y   +g ++ +ygah fh+  ++++v++++ +
     KOO22298.1  72 IVGAGLSGAVLAERCSKElGMTSLIIDSRDHIGGNCYDYIEsHGlRASKYGAHLFHT--NFERVWEYVTQ 139
                    9****************99********************5548977778********..59*****9987 PP

>> FAD_oxidored  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.7   0.0   1.7e-05      0.06       1      38 [.      69     107 ..      69     148 .. 0.89
   2 ?    1.7   0.0     0.036   1.3e+02      80     113 ..     270     304 ..     215     317 .. 0.79

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 1.7e-05
  FAD_oxidored   1 DvvVvGGgpaGvaAA.iaAaraGakvlLveergvlGGll 38 
                   D+++vG+g++G + A   +++ G + l+++ r+++GG+ 
    KOO22298.1  69 DLLIVGAGLSGAVLAeRCSKELGMTSLIIDSRDHIGGNC 107
                   99*******9976551566788***************95 PP

  == domain 2  score: 1.7 bits;  conditional E-value: 0.036
  FAD_oxidored  80 kwntfepevakavleeml.aeagvtvllntrlvev 113
                   kw++   + +++++e+ml +++++t+ ln+++ + 
    KOO22298.1 270 KWQALPKRGYTRIFENMLlHDPNITIRLNCDFFQL 304
                   4457888999********999*******9988655 PP

>> Lycopene_cycl  Lycopene cyclase protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   4.1e-05      0.15       1      36 [.      69     103 ..      69     136 .. 0.85

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 4.1e-05
  Lycopene_cycl   1 DvvviGaGpAglslAarlteakpglkvvlieaspsl 36 
                    D++++GaG+ g  lA+r  +++ g+  ++i++ +++
     KOO22298.1  69 DLLIVGAGLSGAVLAERC-SKELGMTSLIIDSRDHI 103
                    99****************.89999999999877766 PP

>> FAD_binding_3  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.1   0.2   0.00019      0.68       2      34 ..      68     101 ..      67     105 .. 0.84
   2 ?   -3.3   0.0       1.1   4.1e+03      92     109 ..     181     198 ..     158     210 .. 0.65

  Alignments for each domain:
  == domain 1  score: 9.1 bits;  conditional E-value: 0.00019
                    EEEEEE--SHHHHHHHHHHH.HTTHHEEEEESSS CS
  FAD_binding_3   2 tdVlIVGaGpaGlmlallLs.eaGvrvvlvekrs 34 
                    +d lIVGaG++G++la   s e G  +++++ r+
     KOO22298.1  68 VDLLIVGAGLSGAVLAERCSkELGMTSLIIDSRD 101
                    789*************876626799999999875 PP

  == domain 2  score: -3.3 bits;  conditional E-value: 1.1
                    CHHCST-CEE--HHHHHH CS
  FAD_binding_3  92 lesspervtvypqteler 109
                    ++++ ++ ++y q+++ +
     KOO22298.1 181 IQTEEQMAEWYAQNRVMP 198
                    345555555555555544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (482 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       359  (0.0200234); expected 358.6 (0.02)
Passed bias filter:                      349  (0.0194657); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.55u 0.26s 00:00:00.81 Elapsed: 00:00:00.44
# Mc/sec: 3282.95
//
Query:       KOO22299.1  [L=449]
Description: DNA repair protein rad51-like 2-like protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    8.6e-24   84.2   0.0    1.6e-15   57.0   0.0    2.1  2  Rad51       Rad51
      2e-08   34.0   0.9    4.9e-08   32.8   0.9    1.6  1  AAA_25      AAA domain
    1.1e-07   31.5   0.0    1.6e-07   30.9   0.0    1.2  1  ATPase      KaiC
    2.7e-06   27.0   0.1    6.2e-06   25.9   0.1    1.5  1  RecA        recA bacterial DNA recombination protein
    0.00039   20.7   0.0      0.002   18.4   0.0    2.0  1  AAA_22      AAA domain
     0.0021   17.8   0.1     0.0056   16.4   0.1    1.7  1  AAA_30      AAA domain
     0.0089   16.4   0.0      0.018   15.5   0.1    1.5  1  AAA_16      AAA ATPase domain
     0.0096   15.4   0.1       0.02   14.4   0.1    1.4  1  PhoH        PhoH-like protein
  ------ inclusion threshold ------
      0.012   15.4   0.0      0.016   15.0   0.0    1.3  1  AAA_24      AAA domain
      0.026   14.3   0.1       0.04   13.7   0.1    1.3  1  ATP_bind_1  Conserved hypothetical ATP binding protein
       0.06   12.3  20.1      0.086   11.8  20.1    1.3  1  MFS_1       Major Facilitator Superfamily
      0.067   13.6   0.1       0.12   12.8   0.1    1.3  1  AAA         ATPase family associated with various cellular ac
       0.16   12.3   0.0       0.32   11.3   0.0    1.5  1  AAA_19      AAA domain
       0.22   11.7   0.2       0.49   10.5   0.1    1.5  1  AAA_33      AAA domain
       0.23   10.6   0.0       0.33   10.1   0.0    1.2  1  NB-ARC      NB-ARC domain


Domain annotation for each model (and alignments):
>> Rad51  Rad51
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.0   0.0   1.4e-18   1.6e-15      18      93 ..     170     243 ..     151     261 .. 0.89
   2 !   25.1   0.0   7.7e-09   9.2e-06     126     190 ..     304     368 ..     274     394 .. 0.83

  Alignments for each domain:
  == domain 1  score: 57.0 bits;  conditional E-value: 1.4e-18
                 EE--S-HHHHHHHTSSEESSSEEEEEESTTSSHHHHHHHHHHHTTS-TTTS--SSEEEEEESSS---GGGGHHHHH CS
       Rad51  18 qlttGskklDelLgGGietgsiteifGefrsGktqlchtlcvtvqlplelgGgegkavyidtegtfrperlveiae 93 
                  + tG  +lD+ LgGG++  ++te++G  +sGktqlc +++  + l     G   +++yidteg+f ++rl+++  
  KOO22299.1 170 AVPTGLAALDAHLGGGLPMRAVTELVGPAGSGKTQLCSSVAAHALLA--GAGEGTRVIYIDTEGSFSAKRLLQLLR 243
                 578************************************99999887..5677789***************99865 PP

  == domain 2  score: 25.1 bits;  conditional E-value: 7.7e-09
                 HHHHHS-EEEEEEETTTGGGCH-------THHHHHHHHHHHHHHHHHHHHH--EEEEEEE----- CS
       Rad51 126 allaedkfallivDsvtalyRtdfsgrgelakRqqklgkllrtLrkladefevavvitnqvvaqv 190
                  +l+  +++llivDs++      f   g++ +Rq  +  l+ +L+  ad f  +v+  n+vva +
  KOO22299.1 304 DMLTPPRVGLLIVDSIAMAAHRGFDRGGNVLRRQSAVVALAARLKLYADAFATCVLCVNHVVAGP 368
                 4667789*********9888889***************************************974 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.8   0.9   4.1e-11   4.9e-08      24     189 ..     180     364 ..     161     366 .. 0.72

  Alignments for each domain:
  == domain 1  score: 32.8 bits;  conditional E-value: 4.1e-11
      AAA_25  24 wlvkgllpagelallaGapgtGKttlaldlalava.tGkpwlgpvapeqgkVlyvsaEdsedelrrRlravgeal........................ 97 
                   ++g lp+ +++ l+G+ g+GKt l++++a++ +  G    g    e  +V+y+++E+s    ++Rl +++++l                        
  KOO22299.1 180 AHLGGGLPMRAVTELVGPAGSGKTQLCSSVAAHALlAGA---G----EGTRVIYIDTEGSF--SAKRLLQLLRTLgapsamdqagataeaapalassla 269
                 5567778***************************95555...6....899***********..9***********888888888877766666666555 PP

      AAA_25  98 .......rddarllvldlagveslpLfakdrggtlltadvdaleaaieevegvrlvviDplsr.algg.densnsd.....vgalvealeriarrtgaa 182
                        ++             +l+++ + +     t + ++le ++   ++v+l+++D+++  a++g d   n       v al ++l+  a+++   
  KOO22299.1 270 rgvppaeELL-----------RRLTVYRPSTWADFCTVVSEQLELDMLTPPRVGLLIVDSIAMaAHRGfDRGGNVLrrqsaVVALAARLKLYADAFATC 357
                 4433222222...........2344444455555678888899999999788********998455557444443322222466666666667777777 PP

      AAA_25 183 vllvhHv 189
                 vl+v Hv
  KOO22299.1 358 VLCVNHV 364
                 8888886 PP

>> ATPase  KaiC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.9   0.0   1.3e-10   1.6e-07       1      59 [.     171     232 ..     171     249 .. 0.82

  Alignments for each domain:
  == domain 1  score: 30.9 bits;  conditional E-value: 1.3e-10
      ATPase   1 vktgIeglDeilkgGipegrvvlitGepGtGKtifa....lqFlikgaekygepgvfvtveep 59 
                 v+tg   lD +l gG+p+++v+ ++G +G+GKt ++    ++ l+ ga + g +++++ +e +
  KOO22299.1 171 VPTGLAALDAHLGGGLPMRAVTELVGPAGSGKTQLCssvaAHALLAGAGE-GTRVIYIDTEGS 232
                 79*******************************98622225678899999.*******99975 PP

>> RecA  recA bacterial DNA recombination protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.9   0.1   5.2e-09   6.2e-06      22      94 ..     157     234 ..     151     243 .. 0.75

  Alignments for each domain:
  == domain 1  score: 25.9 bits;  conditional E-value: 5.2e-09
                 TTS--...-----EE--S-HHHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHH....HHTT--EEEEESS---- CS
        RecA  22 lgdeke..klkvetissGslaldialGiGGlpkGriieiyGpessGkttlalhaiaea....qkkggvaafidaehald 94 
                 lg++++  +l   ++++G  ald  lG GGlp+  ++e+ Gp  sGkt l+ ++ a+a      +g  + +id+e ++ 
  KOO22299.1 157 LGQAASsnHLPAAAVPTGLAALDAHLG-GGLPMRAVTELVGPAGSGKTQLCSSVAAHAllagAGEGTRVIYIDTEGSFS 234
                 555544004556899************.********************9876666655111155677889999998765 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.4   0.0   1.7e-06     0.002       8      68 ..     192     249 ..     189     341 .. 0.85

  Alignments for each domain:
  == domain 1  score: 18.4 bits;  conditional E-value: 1.7e-06
      AAA_22   8 lvvtGesGtGKTtllrrlleqldeeakaee..erpevvfvtlpsstsskdllrellralglel 68 
                 + ++G++G+GKT l+  ++  +      +   e+ +v++++  +s s k ll +llr lg + 
  KOO22299.1 192 TELVGPAGSGKTQLCSSVAAHAL----LAGagEGTRVIYIDTEGSFSAKRLL-QLLRTLGAPS 249
                 5689****************984....444579*************999986.5666676655 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   0.1   4.7e-06    0.0056      19     121 ..     190     343 ..     185     345 .. 0.66

  Alignments for each domain:
  == domain 1  score: 16.4 bits;  conditional E-value: 4.7e-06
      AAA_30  19 rvavltGpAGtGKttalkalreaweaag....grviglAptgk.aAkvLa............eelgieastiakllkrlk................... 81 
                  v+ l+GpAG+GKt + +++++++  ag     rvi +  +g   Ak+L             +++g++a+    l ++l+                   
  KOO22299.1 190 AVTELVGPAGSGKTQLCSSVAAHALLAGagegTRVIYIDTEGSfSAKRLLqllrtlgapsamDQAGATAEAAPALASSLArgvppaeellrrltvyrps 288
                 47779*************997665555445776666554444413444442444444443333445555554444444446666666677777788899 PP

      AAA_30  82 ...............grarlepg.tllivDEagmvdtkqlaallkaaekagakvil 121
                                ++    p+  llivD ++m++ + +++  + +++++a v l
  KOO22299.1 289 twadfctvvseqlelDM-LTPPRvGLLIVDSIAMAAHRGFDRGGNVLRRQSAVVAL 343
                 99999999999997642.23344699********9999999888888887777766 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.1   1.5e-05     0.018      29     104 ..     194     267 ..     175     346 .. 0.65

  Alignments for each domain:
  == domain 1  score: 15.5 bits;  conditional E-value: 1.5e-05
      AAA_16  29 lsGesGvGKsslvrellralekd....ggiflrgkcdqlesaipysalaqalareellrqllde...aesaeleawrekleea 104
                 l+G++G+GK+ l  +++ ++  +    g  +++ +++ + sa +++         +llr l+++   +++ + ++++ +l ++
  KOO22299.1 194 LVGPAGSGKTQLCSSVAAHALLAgageGTRVIYIDTEGSFSAKRLL---------QLLRTLGAPsamDQAGATAEAAPALASS 267
                 89***************98888877766777888777772222323.........5555555552222222222222222222 PP

>> PhoH  PhoH-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.4   0.1   1.7e-05      0.02      20      54 ..     190     226 ..     184     236 .. 0.84

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 1.7e-05
                 SEEEEE--TTSSTTHHHHHHHHHHHHT..TS-SEEEE CS
        PhoH  20 divfaiGpaGtGKtylavalavealkk..kkvkriil 54 
                  ++  +GpaG+GKt l  ++a++al +  ++ +r+i+
  KOO22299.1 190 AVTELVGPAGSGKTQLCSSVAAHALLAgaGEGTRVIY 226
                 577899******************9984456667776 PP

>> AAA_24  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.0   0.0   1.3e-05     0.016       7      42 ..     194     240 ..     188     322 .. 0.81

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 1.3e-05
      AAA_24   7 iyGpsgiGKTtlakel...........gpkplfidtekGlksldadk 42 
                 ++Gp+g+GKT l+++            g ++++idte+++ +    +
  KOO22299.1 194 LVGPAGSGKTQLCSSVaahallagageGTRVIYIDTEGSFSAKRLLQ 240
                 89**************9999******99**********998776555 PP

>> ATP_bind_1  Conserved hypothetical ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.1   3.4e-05      0.04       2      23 ..     195     216 ..     194     229 .. 0.86

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 3.4e-05
  ATP_bind_1   2 vGpaGsGKttfvgalseilelr 23 
                 vGpaGsGKt ++++++ ++ l 
  KOO22299.1 195 VGPAGSGKTQLCSSVAAHALLA 216
                 8***************998665 PP

>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8  20.1   7.2e-05     0.086      65     171 ..       1     107 [.       1     186 [. 0.79

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 7.2e-05
       MFS_1  65 lllglllfalglllllfasslwlllvlrv.lqGlgagalfpagaaliadwfpkeergraigllsagfslGailgpllggllasslgWravfyilaivsl 162
                 +++++++ alg l++ fa+++++ + +r+ l G++ g++  +g+  + +++ +  ++++++++ +  s+ a lgp+++g+ +  lg r + ++  +v++
  KOO22299.1   1 MIASMAAVALGNLAFGFATNIYVAIGVRLiLLGMCNGWVSLMGM-CTLEVAGEAYQTQVFSYIISVGSVTATLGPAIAGWTYGVLGARFPALAPSLVGF 98 
                 799********555558999997777777588999766655555.555677778********************************************* PP

       MFS_1 163 lafvlflll 171
                  ++++++++
  KOO22299.1  99 GLGIVAVAV 107
                 **9964443 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.1    0.0001      0.12       3      34 ..     194     232 ..     193     259 .. 0.77

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 0.0001
                 EESSTTSSHHHHHHHHHHHH.......THEEEEEETTTC CS
         AAA   3 lyGppGtGKTllakavakel.......gvefleisgsel 34 
                 l+Gp G GKT l+++va ++       g++++ i+    
  KOO22299.1 194 LVGPAGSGKTQLCSSVAAHAllagageGTRVIYIDTEGS 232
                 79****************975666555566776666555 PP

>> AAA_19  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   0.00027      0.32      12      69 ..     191     258 ..     187     343 .. 0.67

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00027
      AAA_19  12 vllvtaGpGtGKTrvlkhivallvelggvk.peeillvaftgrAakelrerlaalgae.........a 69 
                 v  +++++G+GKT++   + a+++ +g  +  + i++ +  + +ak+l + l++lga+         a
  KOO22299.1 191 VTELVGPAGSGKTQLCSSVAAHALLAGAGEgTRVIYIDTEGSFSAKRLLQLLRTLGAPsamdqagatA 258
                 56689************999998766655405666677778889999999998888887666655442 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.1   0.00041      0.49       1      21 [.     191     211 ..     191     218 .. 0.87

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00041
      AAA_33   1 lvllvGlpGsGKstlaerllk 21 
                 +++lvG++GsGK++l  ++++
  KOO22299.1 191 VTELVGPAGSGKTQLCSSVAA 211
                 6789***********998874 PP

>> NB-ARC  NB-ARC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.0   0.00028      0.33      21      85 ..     190     254 ..     176     272 .. 0.71

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.00028
                 EEEEEEESTTSSHHHHHHHHCCSHCCCCCCBT..EEEEEEEESXXHHHHHHHXXHHHHHCCCTTSSS CS
      NB-ARC  21 lvvalvGmgGvGKttlakqilnksdevegrFd..svawvvvsktdkseeiletilkeLslseddlee 85 
                  v  lvG +G+GKt l +++  + + + g  +  +v+++    +++ +++l+ +l+ L+  ++ ++ 
  KOO22299.1 190 AVTELVGPAGSGKTQLCSSVAAH-ALLAGAGEgtRVIYIDTEGSFSAKRLLQ-LLRTLGAPSAMDQA 254
                 57789***************999.7777655533666666666777777776.66777666555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (449 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       499  (0.027832); expected 358.6 (0.02)
Passed bias filter:                      335  (0.0186848); expected 358.6 (0.02)
Passed Vit filter:                        67  (0.00373696); expected 17.9 (0.001)
Passed Fwd filter:                        15  (0.000836633); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              15  [number of targets reported over threshold]
# CPU time: 0.53u 0.29s 00:00:00.82 Elapsed: 00:00:00.43
# Mc/sec: 3137.58
//
Query:       KOO22300.1  [L=792]
Description: cyclin-dependent kinase-like 2 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.5e-76  257.3   0.0    1.9e-76  256.9   0.0    1.1  1  Pkinase        Protein kinase domain
    6.1e-35  120.7   0.1    5.9e-34  117.5   0.1    2.0  1  Pkinase_Tyr    Protein tyrosine kinase
    6.2e-05   22.4   0.0    0.00055   19.4   0.0    2.2  2  Kinase-like    Kinase-like
     0.0032   17.1   0.1     0.0054   16.3   0.1    1.2  1  RIO1           RIO1 family
     0.0052   16.4   0.1        1.5    8.4   0.0    2.2  2  FTA2           Kinetochore Sim4 complex subunit FTA2
  ------ inclusion threshold ------
      0.055   12.4   0.1      0.079   11.9   0.1    1.2  1  Haspin_kinase  Haspin like kinase domain
       0.12   12.2   0.1       0.41   10.5   0.1    1.8  1  APH            Phosphotransferase enzyme family


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  256.9   0.0   7.3e-80   1.9e-76       1     264 []       4     288 ..       4     288 .. 0.89

  Alignments for each domain:
  == domain 1  score: 256.9 bits;  conditional E-value: 7.3e-80
                 EEEEEEEEEESSEEEEEEEETTTTEEEEEEEEECHCHCHHHHHHHHHHHHHHHHHSCTTB--EEEEEEESSEEEEEEE--TTEBHHHHHHHHSS--HHH CS
     Pkinase   1 yekleklGeGsfGkVykaveketgkivAvKkikkekakkkkekkvlrEikilkklkhpnivrlyevfeekdelylvleyveggeladllerkgslseee 99 
                 ye+l ++GeG++G+V+ka++ketg+ivA+Kk+k+++++++ +k++lrE++ilk+lkh+niv+l+evf++k++l+lv+eyve + l+dl ++   +++ e
  KOO22300.1   4 YETLGTIGEGTYGVVLKARHKETGQIVAIKKFKESDEDEQVRKTALREVRILKQLKHDNIVNLIEVFRKKSKLHLVFEYVERTILEDLERNPDGMDPIE 102
                 788999***********************************************************************************99999***** PP

                 HHHHHHHHHHHHHHHHHTTEE-SS-SGGGEEEETTTEEEE-SGTTSEESSSSCS.BCTTTSCGGGS-HHHH.TTSCBSHHHHHHHHHHHHHHHHHSS-S CS
     Pkinase 100 akkiakqilegleylHskgiiHrDlKpeNiLidekgelKitDFGlakelesssk.ltsfvgtseYlAPEvl.keneyskkvDvWslGvilyelltgkpp 196
                 +kk ++q+l++++y+H+++iiHrD+KpeN+Li+++g lK++DFG+a+ l      +t++v+t++Y+ PE+l ++++y+k+vD+W++G++l e+ +g p+
  KOO22300.1 103 TKKCLWQLLRSIDYCHAHNIIHRDIKPENLLISRNGILKLCDFGFARTLAGPGArYTDYVATRWYRGPELLtGDTQYGKPVDIWAIGCMLPEMASGAPL 201
                 *************************************************998878****************999************************* PP

                 TTTSSHHHHHHHHHHTHHHHHHHCT.............SHH...HHHTTS.......................-HHHHHHHHHHT-SSGCCSTTHHHHH CS
     Pkinase 197 fsgekgkekvekeldqlekilkilg.............etkeklpeasei.......................seeakdllkkllkkdpkkRltaeell 259
                 f+ge++       +dql++i++ +g             +          +                       ++e + ++k++l+++p+ R+t+eel+
  KOO22300.1 202 FPGESD-------IDQLFHIMRCFGqlpdklmdvfranP----------LfigikipdnipqtetleerfpqyPQEQLAMMKSCLRYEPEGRCTCEELM 283
                 **5555.......55555555555433211112333441..........145555555556666668888888************************** PP

                 TSGGG CS
     Pkinase 260 qhpyl 264
                 +h+y+
  KOO22300.1 284 NHRYF 288
                 ****8 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  117.5   0.1   2.3e-37   5.9e-34       5     257 ..       8     284 ..       4     285 .. 0.86

  Alignments for each domain:
  == domain 1  score: 117.5 bits;  conditional E-value: 2.3e-37
                  EEEEEESSEEEEEEEEETTTTSSEEEEEEEEESTTSSHHH.HHHHHHHHHHHHTS-BTTB--EEEEEESSSSEEEEEE--TTEBHHHHHHHTCTTTSB CS
  Pkinase_Tyr   5 kklGeGafGkVvegtlkgekekkevkVavKtlkeeateee.keelleeakimkklkhpnivkllgvctkeepllivteyvkgGdLlkfLrkkekeklt 101
                   ++GeG++G V +++ k    ++ + Va+K++ke+ ++e+ ++  l+e++i+k+lkh+niv+l+ v  k+++l +v+eyv+   L++ L+++  + ++
   KOO22300.1   8 GTIGEGTYGVVLKARHK----ETGQIVAIKKFKESDEDEQvRKTALREVRILKQLKHDNIVNLIEVFRKKSKLHLVFEYVERTILED-LERN-PDGMD 99 
                  589************99....8999*******9988777768999************************************988876.7777.899** PP

                  HHHHHHHHHHHHHHHHHHHHTTEEEST-SGGGEEEEETTEEEE-STTTHEETTTSSEEEETTSSTSGGGGS.-HHHHHHSE.EEHHHHHHHHHHHHHH CS
  Pkinase_Tyr 102 lkdllsfalqvAkGmeyLeskklvHrdlaarNvLlsenkvvkisDfGLardiekddeyvkkeeaklpvkWm.apEslkekk.ftsksDvWsfGvllwE 197
                    ++ ++ +q+ + ++y ++++++Hrd+   N L+s+n + k++DfG ar++       ++ +  +  +W+  pE l+  + + +  D+W+ G +l E
   KOO22300.1 100 PIETKKCLWQLLRSIDYCHAHNIIHRDIKPENLLISRNGILKLCDFGFARTL---AGPGARYTDYVATRWYrGPELLTGDTqYGKPVDIWAIGCMLPE 194
                  ****************************************************...444556677899999878**99865449*************** PP

                  HHTTSSGT...............................TTTSHHHHHHHHH.HTTEES-BBTTSBHHHHHHHHHHT-SSGGGS--HHHHHH CS
  Pkinase_Tyr 198 iftlgesp...............................ypglkneevlekl.kegkrlekpekcpeelyelmkkcweedpeeRptfselve 257
                  +++ g+ p                                p +   ++ +++ ++++  e+  + p+e   +mk+c++++pe R t +el++
   KOO22300.1 195 MAS-GA-PlfpgesdidqlfhimrcfgqlpdklmdvfraNPLFIGIKIPDNIpQTETLEERFPQYPQEQLAMMKSCLRYEPEGRCTCEELMN 284
                  **9.44.3356899999999999999999999888887644446666777773334444556778899999999999999999999999875 PP

>> Kinase-like  Kinase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.6   0.0      0.11   2.8e+02      20      52 ..      10      42 ..       6      62 .. 0.77
   2 !   19.4   0.0   2.1e-07   0.00055     110     272 ..      63     224 ..      42     230 .. 0.72

  Alignments for each domain:
  == domain 1  score: 0.6 bits;  conditional E-value: 0.11
  Kinase-like 20 lkkgdrsvvfevkdqetgeplavkvfllpseas 52
                 +++g  +vv++++ +etg+ +a+k f   +e  
   KOO22300.1 10 IGEGTYGVVLKARHKETGQIVAIKKFKESDEDE 42
                 7788899*****************998766544 PP

  == domain 2  score: 19.4 bits;  conditional E-value: 2.1e-07
  Kinase-like 110 vvnallllpa.asvdl..eilnkvlqkrset..hkkletiarlllTlqlirlaanLqakglvhgkftvdnllldekgglmlggft...aLvragtkvv 199
                  +vn++++  + +++ l  e +  ++ +  e+  +    +  ++ l  ql+r + + +a+ ++h +++++nll  ++g l+l +f+    L   g+++ 
   KOO22300.1  63 IVNLIEVFRKkSKLHLvfEYVERTILEDLERnpDGMDPIETKKCL-WQLLRSIDYCHAHNIIHRDIKPENLLISRNGILKLCDFGfarTLAGPGARYT 159
                  555555554312233344555555555555555555556677888.89***********************************973336777899999 PP

  Kinase-like 200 lseve.kgfaPpEllgsrggytrknktkmthkldaWqlGlviyriwclklPltlateeakeewkfklck.kipek 272
                     v+ + +  pEll           t++  ++d W++G     +++  +Pl   ++++ + ++  +c  + p+k
   KOO22300.1 160 -DYVAtRWYRGPELLTG--------DTQYGKPVDIWAIGCMLPEMASG-APLFPGESDIDQLFHIMRCFgQLPDK 224
                  .5555599******998........577788********999888874.56666666666666666665556655 PP

>> RIO1  RIO1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.1   2.1e-06    0.0054      39     150 ..      32     146 ..      18     158 .. 0.78

  Alignments for each domain:
  == domain 1  score: 16.3 bits;  conditional E-value: 2.1e-06
                 TCG--GS-HHHHHHHHHHHHHHHHHHHHHTT.--S--EEEEETTE.EEEE--EETTEEGGBHHHCG.-..HHHHHHHHHHHHHHHHHHHHTSTEEESS- CS
        RIO1  39 kdrksktnprklvklwaekEfrnLkrleeag.vpvPkpielkrhv.lvmefigedgvaapklkdve.e..eeeaeelyeevleemrklykeaglvHaDL 132
                  +++++++  + v+ +a +E+r+Lk+l++ + v+  ++   k+   lv e+++   + + +l+  +      e++++++++l+++    + ++++H D+
  KOO22300.1  32 IKKFKESDEDEQVRKTALREVRILKQLKHDNiVNLIEVFRKKSKLhLVFEYVE--RTILEDLERNPdGmdPIETKKCLWQLLRSID-YCHAHNIIHRDI 127
                 45667889999*****************9986788888877665449******..888888888874247899**********755.55599******* PP

                 STTSEEEETT.EEEE--GT CS
        RIO1 133 SeyNvlvded.kvviIDvs 150
                    N+l++++  + + D++
  KOO22300.1 128 KPENLLISRNgILKLCDFG 146
                 *******999455577766 PP

>> FTA2  Kinetochore Sim4 complex subunit FTA2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.0   0.1    0.0032       8.1      23      62 ..       3      44 ..       1      74 [. 0.76
   2 !    8.4   0.0   0.00057       1.5     177     214 ..     106     148 ..      81     149 .. 0.78

  Alignments for each domain:
  == domain 1  score: 6.0 bits;  conditional E-value: 0.0032
        FTA2 23 diefleyLgkglhsiVlkvkirgk..eYALKlFrfleaeele 62
                ++e l  +g+g+ ++Vlk++ ++   + A+K F++ +++e+ 
  KOO22300.1  3 NYETLGTIGEGTYGVVLKARHKETgqIVAIKKFKESDEDEQV 44
                56778889************986444*****99999766554 PP

  == domain 2  score: 8.4 bits;  conditional E-value: 0.00057
        FTA2 177 qlpkllrdlkklhklgIvvrDlkeenyi...dg..kLvDlsaa 214
                  l +llr ++  h++ I++rD+k+en++   +g  kL+D++ a
  KOO22300.1 106 CLWQLLRSIDYCHAHNIIHRDIKPENLLisrNGilKLCDFGFA 148
                 456899********************97333556678999876 PP

>> Haspin_kinase  Haspin like kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.1   3.1e-05     0.079     207     257 ..     102     151 ..      30     179 .. 0.85

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 3.1e-05
  Haspin_kinase 207 qalsifwqivkiLyvaEtkfeFEHRdLhldniLvdknlnvtlidlklsRle 257
                    + ++ +wq + ++    +  +  HRd++ +n L+ +n+   l+d+  +R  
     KOO22300.1 102 ETKKCLWQLLRSIDYCHA-HNIIHRDIKPENLLISRNGILKLCDFGFARTL 151
                    567889999999988754.6889**************************86 PP

>> APH  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.1   0.00016      0.41     156     197 ..     107     149 ..      36     152 .. 0.73

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00016
                 HHHH--S...SS-EEEE-SS-SGGGEEEC..TTEEEEE---TT-E CS
         APH 156 laallpg...elptvllHgDlhpgNllvdpddgrvtGviDfedag 197
                 l++ll++     ++ ++H+D++p Nll+    + +  + Df++a+
  KOO22300.1 107 LWQLLRSidyCHAHNIIHRDIKPENLLIS--RNGILKLCDFGFAR 149
                 3344444666678889*************..55555788999987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (792 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       600  (0.0334653); expected 358.6 (0.02)
Passed bias filter:                      455  (0.0253779); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.74u 0.30s 00:00:01.04 Elapsed: 00:00:00.49
# Mc/sec: 4874.06
//
Query:       KOO22301.1  [L=1027]
Description: alanyl-tRNA synthetase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
   1.6e-203  677.2   0.0     2e-203  676.9   0.0    1.1  1  tRNA-synt_2c  tRNA synthetases class II (A)
    2.1e-15   56.5   0.0    4.7e-15   55.4   0.0    1.6  1  tRNA_SAD      Threonyl and Alanyl tRNA synthetase second addi
      4e-12   46.7   3.2    1.1e-11   45.3   3.2    1.7  1  DHHA1         DHHA1 domain


Domain annotation for each model (and alignments):
>> tRNA-synt_2c  tRNA synthetases class II (A)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  676.9   0.0  3.4e-207    2e-203       2     551 ..      70     654 ..      69     655 .. 0.94

  Alignments for each domain:
  == domain 1  score: 676.9 bits;  conditional E-value: 3.4e-207
                   HHHHHHHHHHCTT.-EEE----SS-SSSTTCSS--SGGGGGHHHHTTSS....CGGSSSEEEEEEEEE-EETTEEGGGGTTTSSS--SEEEEEEEEE CS
  tRNA-synt_2c   2 irekFldfFekkg.HtvvksssvvpendptllfvnAgmaqfkpiflgke....akpklkravnsQkciRagGkhnDlenVGktarHhTfFeMlGnfs 93 
                   +r+ F+d+F+kk  Ht+++ss+vvp ndptllf+n+gmaqfkp+flg++      ++l ra+n+QkciRagGkhnDle+VG +++HhT+FeMlG +s
    KOO22301.1  70 VRSVFIDYFAKKHaHTFYPSSPVVPYNDPTLLFINSGMAQFKPVFLGNAdpasPLASLVRAANTQKCIRAGGKHNDLEDVGMDTYHHTLFEMLGSWS 166
                   89*******96655**********************************98877778999************************************** PP

                   SSSS-HHHHHHHHHHHHHTTTT--GGGEEEEEETTEH........HHHHHHHHTTTTEGGGEEEE-HHHHEEESSSSEEEEEEEEEEEECETTSHHC CS
  tRNA-synt_2c  94 fgdYfkeeaiefawelltkelgldkerlyvtvfeedd........eaveiweklvgvpeerilrfgekdnfwemgdtgpcgpcseiyydrgeeigkr 182
                   fgdYfk eai++awellt+++gl+++r+y+t+f +d         ea+++w  +  +pe+r+l+ ++kdnfwemgdtgpcgpc+ei+ydr   ig+r
    KOO22301.1 167 FGDYFKAEAITWAWELLTEVYGLPPDRFYATYFGGDArlglapdeEARQLWLRF--LPESRVLPGSAKDNFWEMGDTGPCGPCTEIHYDR---IGGR 258
                   ************************************99****************..7*********************************...**** PP

                   HCCCCTTCTCCHEEEEEEEEEEEEEESTTSHEEEEEEEEEEEEEEHHHHHHHHTTHSSGGGSCCTHHHHHHHHHHHT-.-T......CSTCCHHHHH CS
  tRNA-synt_2c 183 kaaseveadddrvleiwnlvfmqfnreedgtlkpLpkksidtGmglerlvavLqevrsnydtdlfvpvieaieeisga.ty......edkdetdeal 272
                   +aa  v++dd++vleiwnlvfmqfnre +g+l+pLp+k++dtGmg+erlv+vLq++rsnydtd+f+p++ +i++++ga +y      ed +  d+a+
    KOO22301.1 259 DAAALVNNDDPDVLEIWNLVFMQFNREPSGDLRPLPAKHVDTGMGFERLVSVLQDKRSNYDTDVFMPLFTEIQKLTGApPYtgklgdEDPKLKDTAY 355
                   ******************************************************************************999****99888999**** PP

                   HHHHHHHHHHHHHHHTT--SSSSHHHHHHHHHHHHHHHHH.HHTT-SSTHHHHHHHHHHHHHTTTGCCHHCCHHHHHHHHHHHHHHHHCCHHHHHHH CS
  tRNA-synt_2c 273 rviaDHvralafaladGvvpsnegrgYvlRrllRravrha.kkLglkekflaklvavvvevlgdvypelkekeekveeiieeEeerFakTlerGlkl 368
                   rviaDH+r+l+fa+adG++psnegrgYvlRr+lRravr++ ++Lg++e+f+a lv++v+  lgd++pel+++  kv+ +i eEe +F+ Tl+rG k 
    KOO22301.1 356 RVIADHIRTLSFAIADGALPSNEGRGYVLRRILRRAVRYGrQMLGAQEGFFAALVPTVAASLGDTFPELRSQLGKVQAVIAEEEMAFTSTLSRGIKE 452
                   ****************************************999****************************************************** PP

                   HHHHHHHCCC..CSEEXHHHHHHHHHCHXXXHHHHHHHHHCTTXEEXHHHHHHHHHHHHHHHCCHHSXSS...XXXXXXXXTTSHCHH.....CCTS CS
  tRNA-synt_2c 369 leelikklkk..kkelsgedafkLydtyGfPvdltkeiaeekglkvdiegfekameeqrerskkekkekk...likkdvealkelkkt.....eefl 455
                   ++ +++++k    k+++g+ af Lydt GfP dlt+++a+e gl+vd+egf+++ ++qr+rs +++++ k   +++  +e+++ l ++     +++ 
    KOO22301.1 453 FSSYAATVKAqgVKTIDGKSAFFLYDTMGFPFDLTQLMAREAGLEVDTEGFNEQIKQQRARSAAAAQAAKgggSLTLGAEQTAALGAQghaytDDSD 549
                   ******9999889*************************************************98888777778777777777777777777886777 PP

                   TTTXX..XXXXTSXXXXXXSEEEEEEEEEETTE......EEESEEXXXXSSSSCSXXXE.EEEESSEEEEESEEEEETTEEEEEXSS.XSXXXTTSE CS
  tRNA-synt_2c 456 gyeel..eaeakvlallkdkefveeveegeevg......vvLdrTpfYaesGGqigDeG.liekegaefrvkdvqkakgvvlhkgkleegklkvgdk 543
                   +y++      +k+ a+++ + fv++v+++  ++      +vLdrT+fY+  GGq  D G l+++++ ef+v+ vq ++g+vlh g l +g+l +g++
    KOO22301.1 550 KYSWElpAKPSKLQAIFTADGFVDRVQAVAGNAeettvgLVLDRTAFYSVAGGQTCDVGsLLSGDDVEFEVQRVQSYGGFVLHAGVLRRGTLAMGQE 646
                   777655556677888888888888877654444444455********************9999********************************** PP

                   EEEEEXHH CS
  tRNA-synt_2c 544 vkaevdee 551
                   ++++vd +
    KOO22301.1 647 LSCKVDIA 654
                   *****965 PP

>> tRNA_SAD  Threonyl and Alanyl tRNA synthetase second additional domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.4   0.0   7.9e-19   4.7e-15       1      44 []     753     812 ..     753     812 .. 0.94

  Alignments for each domain:
  == domain 1  score: 55.4 bits;  conditional E-value: 7.9e-19
                 EEEEEETT.................EEEEESS---SBGGGC-SEEEECCECCCTCEEEEE CS
    tRNA_SAD   1 vrvvsiGd................isvelCgGtHvpnTgeIgafkilseesiakglrRIy 44 
                 vrvv++G                  s+elCgGtH++nT+e  +f+++see++akg+rRI+
  KOO22301.1 753 VRVVTVGPsvaevladpakshgpsSSIELCGGTHISNTREAADFALVSEEAVAKGIRRIV 812
                 8*****977888999999999999999********************************7 PP

>> DHHA1  DHHA1 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.3   3.2   1.8e-15   1.1e-11       7     133 ..     882    1017 ..     876    1022 .. 0.81

  Alignments for each domain:
  == domain 1  score: 45.3 bits;  conditional E-value: 1.8e-15
                  HHHHHHHHHHCHHHHHHHHHHHHHHHTCEEEC..TCEEEEEECHCCHHHHHHHHHHHHHHTHGBT.TCEEEEEEEECT..EEEEEEEESSH...SS- CS
       DHHA1    7 erkelekeleelkealaklkaeellekaeevk..gvkvlvaevgeewdagalgiaadklksklkk.pvivfvakeegd..kvkvsarskkd...gvd 95  
                  + k+++k l+ + +   +++a+++le+a  ++  g  ++v e+ ++ d + l++++ k+ +   +   +v++++ + +  kv   a++ ++    + 
  KOO22301.1  882 RDKDVQKMLKGFAQSRIDVAASTALESAAAASasGGRFIVLEL-DGLDGKSLQTLVQKVAK--AEpSLAVLALSVDAPanKVFSFAAVPEElqsSLP 975 
                  6688999999999999999999999999988899*********.*****************..6655555555555556699999999999****** PP

                  HHHHHHHHHHHTTCCEEEE.TCEEE..EEEEHCH.HHHHHHH CS
       DHHA1   96 agelakeaaaklgggGGGH.dlAaG..agipaek.leealea 133 
                  a+e++++a + +gg+GGG+ + A+G  ag++a   + +a ++
  KOO22301.1  976 ANEWLNKALEPVGGKGGGKaASAQGsgAGVDAKAsVAAAKAR 1017
                  *************************44444433325555554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1027 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       640  (0.0356964); expected 358.6 (0.02)
Passed bias filter:                      447  (0.0249317); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.72u 0.31s 00:00:01.03 Elapsed: 00:00:00.46
# Mc/sec: 6734.01
//
Query:       KOO22302.1  [L=276]
Description: vacuolar sorting protein 35 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.8e-69  233.7   2.4      2e-48  165.5   1.8    3.0  3  Vps35     Vacuolar protein sorting-associated protein 35


Domain annotation for each model (and alignments):
>> Vps35  Vacuolar protein sorting-associated protein 35
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  165.5   1.8   1.1e-52     2e-48       2     115 ..      13     125 ..      12     125 .. 0.98
   2 !   61.5   0.0   3.1e-21   5.6e-17     185     241 ..     119     175 ..     117     180 .. 0.94
   3 !    8.3   0.0   4.1e-05      0.73     328     371 ..     216     259 ..     180     274 .. 0.76

  Alignments for each domain:
  == domain 1  score: 165.5 bits;  conditional E-value: 1.1e-52
       Vps35   2 LeealavvkeqsflmkraleedklmdaLkhasnmlseLrtssLsPkqYYeLYmavfdeLrhLssyLkdehkkkkkkladLYelVQyagnivpRLYLlit 100
                 L+ea +vvk+q+f+mkr+l++++l+daLkhas+ml eLrts+L Pk YY LY+  +deLrh++sy++ ehk++++ + +LYelVQ+agn++pRLYLl t
  KOO22302.1  13 LAEARQVVKQQAFYMKRSLDQRNLRDALKHASQMLGELRTSNLGPKAYYSLYIDATDELRHMESYITAEHKRGRR-MLELYELVQHAGNVLPRLYLLLT 110
                 889***********************************************************************9.*********************** PP

       Vps35 101 vGtvyikskdapake 115
                 vG+vyi sk+ p++e
  KOO22302.1 111 VGSVYIVSKEGPVRE 125
                 **********99876 PP

  == domain 2  score: 61.5 bits;  conditional E-value: 3.1e-21
       Vps35 185 hqghsrerekrekeRkeLkiLVGsnLvrLsqLegvdlelYkekiLpkileqivqcrD 241
                 ++g+ rere+rekeR++L+iLVG+nL  Ls+Legvdl++Y+++++p+ileq   ++D
  KOO22302.1 119 KEGPVREREQREKERMDLRILVGTNLASLSKLEGVDLAMYQSSVFPQILEQAAPVED 175
                 57999**********************************************988877 PP

  == domain 3  score: 8.3 bits;  conditional E-value: 4.1e-05
       Vps35 328 lsledilallesllnlslklypdnlenvdkvlelaaeklkevel 371
                 ++   +l+l++ ll++sl +yp++l ++++ l+++ + l+++ +
  KOO22302.1 216 FEPVALLELYDGLLTFSLAVYPKRLGYIEATLSACLSLLESSPK 259
                 57778999***************************999988655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (276 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       383  (0.021362); expected 358.6 (0.02)
Passed bias filter:                      311  (0.0173462); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.27s 00:00:00.71 Elapsed: 00:00:00.44
# Mc/sec: 1872.47
//
Query:       KOO22303.1  [L=323]
Description: glycylpeptide n-tetradecanoyltransferase 1-like protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.3e-54  184.1   0.3    3.3e-54  183.6   0.3    1.1  1  NMT_C     Myristoyl-CoA:protein N-myristoyltransferase, C-ter
    3.6e-39  134.2   0.5    1.1e-25   90.3   0.1    2.7  3  NMT       Myristoyl-CoA:protein N-myristoyltransferase, N-ter


Domain annotation for each model (and alignments):
>> NMT_C  Myristoyl-CoA:protein N-myristoyltransferase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  183.6   0.3   3.7e-58   3.3e-54      50     189 ..     183     312 ..     174     319 .. 0.95

  Alignments for each domain:
  == domain 1  score: 183.6 bits;  conditional E-value: 3.7e-58
                 HTTSSEEEE--HHHHHHHHC-SSTTSBTTTEEEEEEEETTS.EEEEEEEEEE--EEETT-SS-SEEEEEEEEEEEECCCTTHHHHHHHHHHHHHHHHHH CS
       NMT_C  50 lkrfdlaqvfseeeveHwllskkkkreeqvvwsYVvedeetkkitDfvSFYslpstvlknpkhktlkaAYlfyyastetkklkkrlkeLvkdalilakk 148
                 l +f++a+++s  e++Hw+l+     +  v++sYVved+ +k++tD+vSFY+lps++l+n+khktl aAY +yy +t+t     +l +L++dal+lak+
  KOO22303.1 183 LIEFKIAPQISLAEFKHWMLT-----QTGVIYSYVVEDPVSKELTDMVSFYALPSSILGNDKHKTLCAAYAYYYYHTAT-----PLAQLMNDALVLAKR 271
                 668******************.....99**************************************************9.....*************** PP

                 CTESEEEEESSTTGGGCTTTTT-EEEEEEEEEEEETEEE.- CS
       NMT_C 149 akfDvfnaltlmdnklfleelkFgagdgkLnYYLyNyrvap 189
                  +fDvfnal++++n++fl+elkFg+gdg+L+YYLyN+r++ 
  KOO22303.1 272 LDFDVFNALDILQNETFLKELKFGIGDGNLQYYLYNWRAPF 312
                 **************************************965 PP

>> NMT  Myristoyl-CoA:protein N-myristoyltransferase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   90.3   0.1   1.2e-29   1.1e-25       2      79 ..      64     140 ..      63     141 .. 0.95
   2 !   43.9   0.0   2.4e-15   2.1e-11     128     160 .]     139     171 ..     138     171 .. 0.98
   3 ?   -1.3   0.0       0.2   1.8e+03      61      91 ..     196     227 ..     192     245 .. 0.71

  Alignments for each domain:
  == domain 1  score: 90.3 bits;  conditional E-value: 1.2e-29
                 SS----GGGS-SS----STTEEEEE--TTSHHHHHHHHHHHHHHSSCTTTSTEEE---HHHHHHHCTSTT--GGGEEE CS
         NMT   2 ieeskkveevrkeplklpkgfewvtvdledeeelkevyelLsenYvedddamfrfkyskeflkWalkppgykkewhvg 79 
                 i++  +++ vrkep++lp +few++vdl d +++ke+y+lL+enYved d+mfrf+ys  flkWal+ppg   ew+v 
  KOO22303.1  64 IDP-ADMDAVRKEPYNLPPSFEWSDVDLGDAAQAKELYTLLHENYVEDGDQMFRFDYSVPFLKWALQPPGSLIEWMVL 140
                 555.7899*******************************************************************996 PP

  == domain 2  score: 43.9 bits;  conditional E-value: 2.4e-15
                 HHHHHHHHHHHTTT--EEEEEESSTSSSESEEE CS
         NMT 128 vlikEitRrvnlkgifqavytagvvlpkpvstC 160
                 vlikEitRrvn +g+fqa ytagvvlpkpv++C
  KOO22303.1 139 VLIKEITRRVNRRGLFQATYTAGVVLPKPVAKC 171
                 9*******************************9 PP

  == domain 3  score: -1.3 bits;  conditional E-value: 0.2
                 HHHHHHCTSTT--GGGEEEEEETT.TTEEEEE CS
         NMT  61 eflkWalkppgykkewhvgvrvkk.skkLvaf 91 
                 ef +W l++ g+  +++v   v+k  + +v+f
  KOO22303.1 196 EFKHWMLTQTGVIYSYVVEDPVSKeLTDMVSF 227
                 78899999999999998865554413445555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (323 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       414  (0.0230911); expected 358.6 (0.02)
Passed bias filter:                      397  (0.0221429); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.47u 0.24s 00:00:00.71 Elapsed: 00:00:00.40
# Mc/sec: 2417.82
//
Query:       KOO22304.1  [L=474]
Description: DNA replication licensing factor mcm3-like protein, partial [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.2e-94  315.7   0.0    1.6e-94  315.2   0.0    1.2  1  MCM              MCM P-loop domain
    4.7e-24   84.6   3.5    7.9e-24   83.9   3.5    1.4  1  MCM_lid          MCM AAA-lid domain
    8.6e-18   64.4   0.0    1.5e-17   63.6   0.0    1.4  1  MCM_OB           MCM OB domain
    2.3e-08   33.7   0.1    1.2e-06   28.0   0.0    2.4  2  Mg_chelatase     Magnesium chelatase, subunit ChlI
     0.0094   15.8   0.0       0.02   14.7   0.0    1.6  1  AAA_3            ATPase family associated with various cellul
  ------ inclusion threshold ------
      0.014   15.4   0.0      0.037   14.0   0.0    1.7  1  AAA_5            AAA domain (dynein-related subfamily)
      0.016   14.9   0.0       0.06   13.1   0.0    1.9  2  Sigma54_activat  Sigma-54 interaction domain


Domain annotation for each model (and alignments):
>> MCM  MCM P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  315.2   0.0   6.1e-98   1.6e-94       2     224 .]      91     313 ..      90     313 .. 0.99

  Alignments for each domain:
  == domain 1  score: 315.2 bits;  conditional E-value: 6.1e-98
                 HHHHHHHHTSSTHHHHHHHHSSTTSSS-HHHHHHHHHHHH---EBBBSSSSBBCSS-EEEEEESSTSTHHHHHHHHHHHSSSEEEEESSSSSSSHSSSE CS
         MCM   2 veeikelakekdiieklvksiapsiyghedvkkaillqlfggvkkkledktklrgdinvllvgdpgtaKsqlLkyveklapravytsgkgssaagLtaa 100
                 +++i+ l+k +d++++l++s+apsi+gh++ k a+ll+l+gg++k+l ++t+lrgd n+l++gdp+taKsqlL++v ++ap av t+g+gss++gLtaa
  KOO22304.1  91 LTNIRMLSKAPDVLHQLSRSLAPSICGHDHEKVALLLMLLGGSEKNLLNGTHLRGDLNILMLGDPSTAKSQLLRFVLRIAPLAVSTTGRGSSGVGLTAA 189
                 6799*********************************************************************************************** PP

                 EEEESSSSSEEEEETHHHHTTTSEEEEESGGGSTCHHHHHHHHHHHHSEEEEESSSCEEEEE--EEEEEEE--SSSSCCTTS-HHHHSSSSHHHHHHSS CS
         MCM 101 vvrdeetgefvleaGalvladkGvcciDefdkmkeedrsalhEamEqqtisiaKaGivatLnartsvlaAanpkagrydkkksvaeninlsaalLsrFD 199
                 v++d+etg+  leaGa+vlad+Gvcc+Defdkm+++dr+a+hE+mEqqt++i+KaGi+a+Lnar+sv+aAanp++g+yd+++s + ni l+++lLsrFD
  KOO22304.1 190 VTKDDETGDRRLEAGAMVLADRGVCCVDEFDKMTDADRVAIHEVMEQQTVTISKAGIHASLNARCSVVAAANPVYGKYDPNRSPMANIGLPDSLLSRFD 288
                 *************************************************************************************************** PP

                 EEEEE-SSTTHHHHHHHHHHHHHHH CS
         MCM 200 lifvllDkvdeekDeelaehivslh 224
                 l+f++lDk+d+e D++++ h++++h
  KOO22304.1 289 LLFIILDKKDAEADRRISGHVLQMH 313
                 **********************998 PP

>> MCM_lid  MCM AAA-lid domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   83.9   3.5   3.1e-27   7.9e-24       1      84 [.     359     445 ..     359     448 .. 0.92

  Alignments for each domain:
  == domain 1  score: 83.9 bits;  conditional E-value: 3.1e-27
                 HHHHHHHHHHHHTT--BETCHHHHHHHHHHHHHHHHH...TSS.TSSSST--HHHHHHHHHHHHHHHHHHTSSSE-HHHHHHHHHHHH CS
     MCM_lid   1 ellrkYiayarekikPklseeakeklseaYvelRkee...eds.krksipitvRqLesliRLseAlAklrlsevvteedveeairllk 84 
                 e+++kYi+ya++k +P lse+a+ ++s+aY++lR +    e   +++++pit+R+Le+liRL+ A+Ak++l++ vte d++ ai+ll+
  KOO22304.1 359 EFVKKYIQYAKQKHSPALSEDAAAAISQAYADLRARVsssE-TdRARTLPITARTLETLIRLASAHAKCHLRHLVTEADAQAAISLLH 445
                 589********************************995542.15799**************************************986 PP

>> MCM_OB  MCM OB domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.6   0.0   5.9e-21   1.5e-17      72     125 ..       2      55 ..       1      56 [. 0.96

  Alignments for each domain:
  == domain 1  score: 63.6 bits;  conditional E-value: 5.9e-21
                 SEEEEEEEEEEE-------------EEEEEEEGGGTT---TT-EEEEEEEEEEE CS
      MCM_OB  72 skfvdfqklklQEspeevpaGelPrslevileddlvdkvkPGdrvevtGiyral 125
                 ++++d+q ++lQE+pe++p+G+lPrs+ev+le dl+d +kPGdr++v Gi ral
  KOO22304.1   2 CEYMDHQMITLQEMPERAPPGQLPRSVEVLLEADLCDLAKPGDRIQVSGIHRAL 55 
                 99************************************************9875 PP

>> Mg_chelatase  Magnesium chelatase, subunit ChlI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.0   0.0     0.022        57      21      47 ..     145     171 ..     131     179 .. 0.86
   2 !   28.0   0.0   4.8e-10   1.2e-06      93     159 ..     197     263 ..     195     277 .. 0.92

  Alignments for each domain:
  == domain 1  score: 3.0 bits;  conditional E-value: 0.022
  Mg_chelatase  21 GgHnlllvGppGsGKtmlakrlpsllp 47 
                   G  n+l++G p + K+ l + +  + p
    KOO22304.1 145 GDLNILMLGDPSTAKSQLLRFVLRIAP 171
                   788**************9998888776 PP

  == domain 2  score: 28.0 bits;  conditional E-value: 4.8e-10
  Mg_chelatase  93 ggskpkpGeislahnGvLfLDElpefkrkvlevLRePledgevtisrakakvefparfqlvaamNpc 159
                   g ++ + G++ la +Gv  +DE+ +++     ++ e +e+++vtis+a  +++  ar+ +vaa+Np 
    KOO22304.1 197 GDRRLEAGAMVLADRGVCCVDEFDKMTDADRVAIHEVMEQQTVTISKAGIHASLNARCSVVAAANPV 263
                   5668899***********************************************************7 PP

>> AAA_3  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   0.0   7.9e-06      0.02      53     114 ..     198     264 ..     149     287 .. 0.81

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 7.9e-06
       AAA_3  53 efefkkGpvf.an..llladeinrappktqsalleameerqvtvege..thklpepflvlatqnPie 114
                 + ++++G+++ a+  +  +de ++ +   + a+ e+me+++vt++++    +l+    v+a+ nP+ 
  KOO22304.1 198 DRRLEAGAMVlADrgVCCVDEFDKMTDADRVAIHEVMEQQTVTISKAgiHASLNARCSVVAAANPVY 264
                 5556666543122337889************************9876226789************94 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.0   1.5e-05     0.037       1     125 [.     148     267 ..     148     275 .. 0.85

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 1.5e-05
                 EEEEE--SSSSHHHHHHHGGGGB.......S--EEEEE--TT--HHHHH--B--.........--------G-SEEEEESGGG--HHHHHHHHHHHHSS CS
       AAA_5   1 dvlLvGppGtgKselaerlaaal.......nreveyvqltrdtteedlkgrreikngttslvdsplvraaregeilvlDEveraesevlnsLlslleer 92 
                 ++l++G+p t+Ks+l + +++         +r    v lt+  t++d +g r++       + +++v       ++++DE++++ ++   + + ++e++
  KOO22304.1 148 NILMLGDPSTAKSQLLRFVLRIAplavsttGRGSSGVGLTAAVTKDDETGDRRL-------EAGAMV--LADRGVCCVDEFDKMTDADRVAIHEVMEQQ 237
                 5899**********9999888877778888888888999999999998888886.......778888..55678************************* PP

                 EEE..-SSSEEE---......-EEEEEESS--... CS
       AAA_5  93 rllleeggelvkaknddllerfrviatanpld..r 125
                 ++ + + g   + ++       +v+a+anp++  +
  KOO22304.1 238 TVTISKAGIHASLNAR-----CSVVAAANPVYgkY 267
                 ***9999998888885.....9********99544 PP

>> Sigma54_activat  Sigma-54 interaction domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.0       1.7   4.4e+03      22      42 ..     146     166 ..     141     185 .. 0.73
   2 ?   13.1   0.0   2.3e-05      0.06      79     142 ..     196     261 ..     190     266 .. 0.90

  Alignments for each domain:
  == domain 1  score: -2.8 bits;  conditional E-value: 1.7
                      SS-EEEECSTTSSHHHHHHHH CS
  Sigma54_activat  22 dlsvlitGesGtGKellarai 42 
                      dl++l++G+  t K+ l r +
       KOO22304.1 146 DLNILMLGDPSTAKSQLLRFV 166
                      678888888888887766554 PP

  == domain 2  score: 13.1 bits;  conditional E-value: 2.3e-05
                      TTTSS-BEHHHHHTTTSEEEEETGGGS-HHHHHHHHHHHHHSE..EESBTSSSEEE--EEEEEEES CS
  Sigma54_activat  79 tGAekekkGlfekadgGtlfLDeigelplelQekLlrvlqege..vervGsskeikvdvriiaatn 142
                      tG ++ ++G++  ad G+  +De  +++ +  + + +v+++++  +++ G +++ ++ + ++aa+n
       KOO22304.1 196 TGDRRLEAGAMVLADRGVCCVDEFDKMTDADRVAIHEVMEQQTvtISKAGIHASLNARCSVVAAAN 261
                      77788889*******************************999722579****************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (474 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       496  (0.0276647); expected 358.6 (0.02)
Passed bias filter:                      388  (0.0216409); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.50u 0.27s 00:00:00.77 Elapsed: 00:00:00.43
# Mc/sec: 3312.57
//
Query:       KOO22305.1  [L=313]
Description: glycoside hydrolase family 97 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (313 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       364  (0.0203023); expected 358.6 (0.02)
Passed bias filter:                      323  (0.0180155); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.44u 0.22s 00:00:00.66 Elapsed: 00:00:00.40
# Mc/sec: 2368.85
//
Query:       KOO22306.1  [L=210]
Description: hypothetical protein Ctob_006361 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (210 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       646  (0.036031); expected 358.6 (0.02)
Passed bias filter:                      403  (0.0224776); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.45u 0.24s 00:00:00.69 Elapsed: 00:00:00.41
# Mc/sec: 1519.41
//
Query:       KOO22307.1  [L=570]
Description: hypothetical protein Ctob_006360 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
  ------ inclusion threshold ------
       0.44   10.0  30.2       0.15   11.5  26.1    2.1  2  Golgin_A5        Golgin subfamily A member 5
        1.9    8.6  12.2          9    6.3   0.9    3.0  4  Baculo_PEP_C     Baculovirus polyhedron envelope protein, PEP
        6.5    6.1  16.1        3.7    6.9   2.5    3.0  3  FliD_C           Flagellar hook-associated protein 2 C-termin


Domain annotation for each model (and alignments):
>> Golgin_A5  Golgin subfamily A member 5
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.3   1.8     0.063   3.8e+02     106     148 ..     100     142 ..      87     146 .. 0.66
   2 ?   11.5  26.1   2.6e-05      0.15      36     162 ..     136     264 ..     121     277 .. 0.82

  Alignments for each domain:
  == domain 1  score: 0.3 bits;  conditional E-value: 0.063
   Golgin_A5 106 rkakeeveaelerlkeelryleeelvrskatlqsrikdrekei 148
                 ++a e+vea+l+ l+ e   le  lv+++a l+ ++ ++++ +
  KOO22307.1 100 NAADEAVEAKLKDLETEEAELEMKLVETRAALRRKVAEKDERM 142
                 4555667777777777777777777777777777777777654 PP

  == domain 2  score: 11.5 bits;  conditional E-value: 2.6e-05
   Golgin_A5  36 eeglesstalsaeldelkqerdllreelq.klnqqieqlrtelqdleaqqqaeaeslreqlqe.leeqleeerkakeeveaelerlkeelryleeelvr 132
                 +e+ e   a++a+l+++ +e++++ +e+q +l+q++ +  +el++ +a   + +e+++  l++ + e+ +e ++a+ e++++++ ++++l +++eel+ 
  KOO22307.1 136 AEKDERMAAKEAALEKMVAEKEQQLAETQaDLKQKVVEKEKELAEAQAALYTKFEESQAGLERaVAEKEAELKAARVEFSKQVAYQERQLAAAQEELSA 234
                 344455578999*****99998877666527899****************9999999988765156777777899************************ PP

   Golgin_A5 133 skatlqsrikdrekeieklrnqlttkslss 162
                 ++  l++++kd+e+++  l+  l   ++++
  KOO22307.1 235 AQGALEEKMKDKETQVAALKTSLEALEQEK 264
                 ********************9998765554 PP

>> Baculo_PEP_C  Baculovirus polyhedron envelope protein, PEP, C terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.1   0.1      0.06   3.6e+02      49      77 ..     101     136 ..      90     150 .. 0.46
   2 ?    5.8   2.0    0.0022        13      24      76 ..     119     171 ..     105     178 .. 0.79
   3 ?    6.3   0.9    0.0015         9      34      77 ..     147     190 ..     131     202 .. 0.84
   4 ?    5.3   1.7    0.0031        19      45      90 ..     223     271 ..     205     287 .. 0.52

  Alignments for each domain:
  == domain 1  score: 1.1 bits;  conditional E-value: 0.06
  Baculo_PEP_C  49 alsedlksllaeldt.......rldtlltnLtdaln 77 
                   a +e++++ l++l+t       +l ++ ++L ++++
    KOO22307.1 101 AADEAVEAKLKDLETeeaelemKLVETRAALRRKVA 136
                   444444444444444111111133333333333333 PP

  == domain 2  score: 5.8 bits;  conditional E-value: 0.0022
  Baculo_PEP_C  24 airlqnvqilaqlatlldaietqLnalsedlksllaeldtrldtlltnLtdal 76 
                    + +++v++ a+l + +++ ++++ a +++l++++ae +++l+++ + L++++
    KOO22307.1 119 ELEMKLVETRAALRRKVAEKDERMAAKEAALEKMVAEKEQQLAETQADLKQKV 171
                   45667778888888888888888888888888888888888888888888776 PP

  == domain 3  score: 6.3 bits;  conditional E-value: 0.0015
  Baculo_PEP_C  34 aqlatlldaietqLnalsedlksllaeldtrldtlltnLtdaln 77 
                   a+l++++++ e+qL + ++dlk+ + e +++l+++ ++L ++  
    KOO22307.1 147 AALEKMVAEKEQQLAETQADLKQKVVEKEKELAEAQAALYTKFE 190
                   78999999999999999999999999999999999988877655 PP

  == domain 4  score: 5.3 bits;  conditional E-value: 0.0031
  Baculo_PEP_C  45 tqLnalsedlksllaeldtrl...dtlltnLtdalnalqdtlrneLtnl 90 
                   +qL a +e+l+++  +l++++   +t++++L+++l al+++    L +l
    KOO22307.1 223 RQLAAAQEELSAAQGALEEKMkdkETQVAALKTSLEALEQEKAATLSAL 271
                   4444444444444444444331113344445555555554444444444 PP

>> FliD_C  Flagellar hook-associated protein 2 C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.5   0.3     0.013        80     192     235 ..      99     142 ..      91     153 .. 0.79
   2 ?    6.9   2.5   0.00062       3.7     190     230 ..     151     191 ..     140     199 .. 0.88
   3 ?    4.9   1.6    0.0026        15     186     233 ..     226     273 ..     208     279 .. 0.84

  Alignments for each domain:
  == domain 1  score: 2.5 bits;  conditional E-value: 0.013
                 HHHHHHHXXXXHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH CS
      FliD_C 192 lqtasknltkqikdldkkiedldkrletleerlkkqfaalekav 235
                 l+ a + ++ ++kdl+++ ++l+++l ++ + l+++ a+ ++ +
  KOO22307.1  99 LNAADEAVEAKLKDLETEEAELEMKLVETRAALRRKVAEKDERM 142
                 56677788888899999999999999999999988888766554 PP

  == domain 2  score: 6.9 bits;  conditional E-value: 0.00062
                 SHHHHHHHHXXXXHHHHHHHHHHHHHCHHHHHHHHHHHHHH CS
      FliD_C 190 gtlqtasknltkqikdldkkiedldkrletleerlkkqfaa 230
                 + +++++++l +++ dl++k+ + +k+l + ++ l+++f++
  KOO22307.1 151 KMVAEKEQQLAETQADLKQKVVEKEKELAEAQAALYTKFEE 191
                 678899*********************************96 PP

  == domain 3  score: 4.9 bits;  conditional E-value: 0.0026
                 STT.SHHHHHHHHXXXXHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHH CS
      FliD_C 186 kssngtlqtasknltkqikdldkkiedldkrletleerlkkqfaalek 233
                 ++ ++ l  a+  l++++kd+++++++l+ +le+le++  +  +ale+
  KOO22307.1 226 AAAQEELSAAQGALEEKMKDKETQVAALKTSLEALEQEKAATLSALEQ 273
                 45558899999*************************998888887775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (570 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2173  (0.1212); expected 358.6 (0.02)
Passed bias filter:                      556  (0.0310112); expected 358.6 (0.02)
Passed Vit filter:                       114  (0.00635841); expected 17.9 (0.001)
Passed Fwd filter:                        42  (0.00234257); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 1.07u 0.33s 00:00:01.40 Elapsed: 00:00:00.52
# Mc/sec: 3319.56
//
Query:       KOO22308.1  [L=226]
Description: hypothetical protein Ctob_006362 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.083   13.0   0.4       0.13   12.3   0.4    1.3  1  DUF2456   Protein of unknown function (DUF2456)


Domain annotation for each model (and alignments):
>> DUF2456  Protein of unknown function (DUF2456)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.4   7.2e-06      0.13      31      87 ..      86     140 ..      70     148 .. 0.71

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 7.2e-06
     DUF2456  31 irglllsviiflvlWpvtigilagigkklgsdyyfnntwap.qviKlvygvvlglitn 87 
                 ++g +l+++ f  +W v+  +l ++ +kl    yf  twap +v+ +v+gv+l ++  
  KOO22308.1  86 LNGPILGCLKF--IWRVFCCLL-PLYEKLFRAAYFFYTWAPkKVMTMVFGVILCFFGG 140
                 56667776665..699987766.665555555556667787369*********99765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (226 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1196  (0.0667076); expected 358.6 (0.02)
Passed bias filter:                      708  (0.0394891); expected 358.6 (0.02)
Passed Vit filter:                        65  (0.00362541); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.25s 00:00:00.74 Elapsed: 00:00:00.42
# Mc/sec: 1611.12
//
Query:       KOO22309.1  [L=989]
Description: transient receptor potential ca2+ channel family [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.028   14.2   0.6      0.069   13.0   0.6    1.7  1  IQ         IQ calmodulin-binding motif
      0.047   12.9  17.5      0.067   12.4  12.7    2.7  2  Ion_trans  Ion transport protein
       0.33   10.7   1.9       0.44   10.3   0.0    2.1  2  DUF2650    Protein of unknown function (DUF2650)


Domain annotation for each model (and alignments):
>> IQ  IQ calmodulin-binding motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.6   1.2e-05     0.069       1      19 [.     922     940 ..     922     941 .. 0.94

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 1.2e-05
                 HHHHHHHHHHHHHHHHHHH CS
          IQ   1 rkaaikIQaawRGylaRkr 19 
                 ++aa+k Qa  RG +aRk+
  KOO22309.1 922 ERAAMKVQAMTRGRVARKK 940
                 59***************97 PP

>> Ion_trans  Ion transport protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.5   0.1     0.024   1.4e+02      57      97 ..     477     531 ..     462     559 .. 0.64
   2 ?   12.4  12.7   1.1e-05     0.067     113     243 ..     673     803 ..     654     804 .. 0.68

  Alignments for each domain:
  == domain 1  score: 1.5 bits;  conditional E-value: 0.024
                 HTH............HHHHHHCHSHHHHHHHHHHHHHHHHH.....HHHHHHHHHHHH CS
   Ion_trans  57 lgl............likkrYlrdpwnilDflvvlpsllsl.....vlseesllllsv 97 
                 +g+              + +Y+r    +l f+++l++ ++l     +    + + +++
  KOO22309.1 477 QGFlhklfvekwalfGRRIHYVRRAIDVLTFSSLLTVAFTLkadlaQ---ANESWVHA 531
                 44444444444444445889****************99999554431...22233333 PP

  == domain 2  score: 12.4 bits;  conditional E-value: 1.1e-05
                 SHHHHHHHHHHHHHHH.HHHHHHHHHHHHHHHHHHHHHHHHTTSCCCCCCSCCSTSSSTTTSSSSSSHHHHHHHHHH...HHTTS.SHHHHHHHHHHHS CS
   Ion_trans 113 leglrtlvtalirsvk.dllnvlllllvvlfifaligvqlfkgklreknecaktwenpnngntnFdnfftallwlfr...lmtte.gwgdilyatldek 206
                 +e+l++++ ++ +++k dl  +ll+++ ++++f++ ++ l+      ++ + + ++ p ++++      + +++l+    ++ te  + d l +++ + 
  KOO22309.1 673 FEKLSVVMLSFQEMFKtDLATFLLIFFYFMIAFSSTMYILY-----PRSGDGYIGTLPAFNTWYGVIHAQLMIALVGgepSIYTEpELLDPLGPFELAD 766
                 66777777777777764677888888888888888888888.....22334555555544333322233334444435555555555555555555555 PP

                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
   Ion_trans 207 skvaliyfvifiilgsflllNlliaviadnfqelter 243
                   + ++++  +i+++ +lllNl+ia+ + +f++ te+
  KOO22309.1 767 VLIFFVLYFFYILIALILLLNLFIAMLSYTFEKSTEE 803
                 8888888889999*******************99886 PP

>> DUF2650  Protein of unknown function (DUF2650)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.4      0.66     4e+03      19      26 ..     267     274 ..     262     283 .. 0.63
   2 ?   10.3   0.0   7.4e-05      0.44      17      33 ..     320     336 ..     316     340 .. 0.88

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 0.66
     DUF2650  19 eCCfelqt 26 
                  CC++ q+
  KOO22309.1 267 ICCVNKQE 274
                 46666555 PP

  == domain 2  score: 10.3 bits;  conditional E-value: 7.4e-05
     DUF2650  17 nkeCCfelqtWvivlLa 33 
                  ++CCfel+ +v+ +La
  KOO22309.1 320 AYACCFELRGAVLAMLA 336
                 679**********9997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (989 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       813  (0.0453455); expected 358.6 (0.02)
Passed bias filter:                      393  (0.0219198); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.71u 0.25s 00:00:00.96 Elapsed: 00:00:00.42
# Mc/sec: 7098.98
//
Query:       KOO22310.1  [L=469]
Description: endonuclease iii-like protein 1-like protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    7.6e-18   65.0   0.1    1.8e-17   63.7   0.0    1.7  2  HhH-GPD   HhH-GPD superfamily base excision DNA repair protei
    5.3e-05   22.9   0.1    0.00015   21.4   0.0    1.9  2  HHH       Helix-hairpin-helix motif


Domain annotation for each model (and alignments):
>> HhH-GPD  HhH-GPD superfamily base excision DNA repair protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.9   0.0         2   1.8e+04      52      78 ..      18      45 ..      17      46 .. 0.67
   2 !   63.7   0.0   2.1e-21   1.8e-17       1     106 [.      70     213 ..      70     215 .. 0.95

  Alignments for each domain:
  == domain 1  score: -3.9 bits;  conditional E-value: 2
                HHHHHHHHHHHHHHH.S-SSS--TTSHH CS
                xxxxxxxxxxxxxxx.xxxxxxxxxxxx RF
     HhH-GPD 52 rrKakyikelArilv.gkpdvlivvDvh 78
                r+K ++++e A i + +  + ++v+D h
  KOO22310.1 18 RTKSERLIEYALIKAfRSSKHASVDDFH 45
                5688888888877766444567777766 PP

  == domain 2  score: 63.7 bits;  conditional E-value: 2.1e-21
                 HHHHHHTTS-HHHHHHHHHHHHHHHS...HCSHHHHHHSHHHHHHHHHTTSTTHHHHHHHHHHHHHHHH.............................. CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.............................. RF
     HhH-GPD   1 vsailsqqtsderanriierlferfg...fptpedladadeekLrelirelGfyrrKakyikelArilv.............................. 66 
                 ++++ls q++d++a  ++ +l+ ++     p + ++a+++ ++++++++ + fy++Kak++ ++Ar+ +                              
  KOO22310.1  70 IACLLSVQCRDSVALDVTRSLMTKCAggsVPAAARVAALPLDEIESAVQRCNFYKTKAKNVLSAARHALarggrppstydellalegvgpkiahllrsv 168
                 6899*********************************************************************************************** PP

                 ..S-SSS--TTSHHHHHHHHHHTTSSSS...TTHHHHHHHHHHHH CS
                 ..xxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxx RF
     HhH-GPD  67 ..gkpdvlivvDvhvrrilkrlrsikek...ktkkkvekkleell 106
                   g+ d++ivvD+hv r+++rlr++++      ++ v+++le+++
  KOO22310.1 169 ayGHEDAGIVVDTHVFRVAQRLRWVDAAtaaAGAEAVRAALERWV 213
                 **99**********************9877677788888886665 PP

>> HHH  Helix-hairpin-helix motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.4   0.0   1.7e-08   0.00015       5      29 ..     143     167 ..     140     168 .. 0.85
   2 ?   -3.7   0.0       1.6   1.4e+04       7      15 ..     334     342 ..     334     343 .. 0.83

  Alignments for each domain:
  == domain 1  score: 21.4 bits;  conditional E-value: 1.7e-08
                 HHTSSHHHHHTSTT-SHHHHHHHHH CS
         HHH   5 lipasreeLlalPGVGpktAeaIls 29 
                   p +++eLlal+GVGpk A   +s
  KOO22310.1 143 RPPSTYDELLALEGVGPKIAHLLRS 167
                 5688****************87765 PP

  == domain 2  score: -3.7 bits;  conditional E-value: 1.6
                 TSSHHHHHT CS
         HHH   7 pasreeLla 15 
                 p +++eL+a
  KOO22310.1 334 PVTPAELEA 342
                 67999*987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (469 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       547  (0.0305092); expected 358.6 (0.02)
Passed bias filter:                      336  (0.0187406); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.48u 0.25s 00:00:00.73 Elapsed: 00:00:00.41
# Mc/sec: 3446.14
//
Query:       KOO22311.1  [L=375]
Description: alcohol dehydrogenase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    5.6e-16   58.7   0.7    1.1e-14   54.5   0.7    2.3  2  ADH_zinc_N    Zinc-binding dehydrogenase
    9.5e-16   57.6   1.6      3e-15   56.0   1.1    2.1  2  ADH_N         Alcohol dehydrogenase GroES-like domain
     0.0001   23.3   0.0    0.00063   20.8   0.0    2.4  2  ADH_zinc_N_2  Zinc-binding dehydrogenase
    0.00054   19.3   0.2    0.00054   19.3   0.2    2.0  2  AlaDh_PNT_C   Alanine dehydrogenase/PNT, C-terminal domain
     0.0006   19.2   0.3      0.001   18.5   0.3    1.3  1  2-Hacid_dh_C  D-isomer specific 2-hydroxyacid dehydrogenase, 
  ------ inclusion threshold ------
      0.057   13.7   0.1       0.13   12.5   0.1    1.6  1  TrkA_N        TrkA-N domain
      0.063   14.0   1.0        4.8    7.9   0.3    2.5  2  CoA_binding   CoA binding domain


Domain annotation for each model (and alignments):
>> ADH_zinc_N  Zinc-binding dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.5   0.7   4.2e-18   1.1e-14       1     128 [.     167     291 ..     167     293 .. 0.94
   2 ?    3.9   0.0      0.02        50      25      76 ..     286     342 ..     278     348 .. 0.64

  Alignments for each domain:
  == domain 1  score: 54.5 bits;  conditional E-value: 4.2e-18
                 HHHHHHHHHHHHTT-EEEEEESSHHHHHHHHHTTESEEEETTTCHHHHHHHHHTTTSSEEEEEESSCSHHHHHHHHHCEEEEEEEEECSCTSSEEE.EE CS
  ADH_zinc_N   1 gvGlaavqlAkalGaeviavdsseeklelakklGadevinykeadlverikeltggegvdvvfecvGsgatleaalkllkpgGrlvvvGggkgeee.fd 98 
                 g+G++++ +AkalG+ v+a+ +++ k+++a++ Gadevi + + d ++++++    + +d+v++++ s++ ++ +++ll  gGr  + G+ +g    + 
  KOO22311.1 167 GLGQMGIRIAKALGCVVTAITRTAGKADFARECGADEVIVS-T-DAEQMLRARR-ARALDLVLNTIPSEHDYSPYTALLSGGGRQIMLGLNTGLIAgMV 262
                 89***************************************.5.8999999999.89*********************************888888899 PP

                 HHHHHHTT-EEEEE-SSCHHHHHHHHHHHH CS
  ADH_zinc_N  99 lrnlllkeksilGsllgslreefkealdll 128
                 ++ l   + ++ Gs  g+  e+ ++++dl+
  KOO22311.1 263 VNGLCCGRSRVAGSGIGG-IEATQAVIDLC 291
                 9999**************.89999899886 PP

  == domain 2  score: 3.9 bits;  conditional E-value: 0.02
                 HHHHHHHHTTESEEEET...TTC.HHHHHHHHHTTTSSEEEEEESSC..SHHHHHHHH CS
  ADH_zinc_N  25 eklelakklGadeviny...kea.dlverikeltggegvdvvfecvG..sgatleaal 76 
                   ++l+ k G + +i     ++  ++ e++++   + g+ +v++ +G  ++++++++ 
  KOO22311.1 286 AVIDLCDKHGIKPFIKVvpvENLnRVYEELEKCN-ESGARFVLDIAGslNEDAFKRCA 342
                 4456777777777777766666666777776655.66888888887755556665555 PP

>> ADH_N  Alcohol dehydrogenase GroES-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.0   1.1   1.2e-18     3e-15       1      60 [.      45     106 ..      45     115 .. 0.94
   2 ?   -1.4   0.0      0.83   2.1e+03      92     107 ..     109     124 ..     106     126 .. 0.84

  Alignments for each domain:
  == domain 1  score: 56.0 bits;  conditional E-value: 1.2e-18
                 TTEEEEEEEEEEE-HHHHHHHTTS..TTTTSSSSEE---EEEEEEEEESTT-CS--TT-EEE CS
       ADH_N   1 pgevlikvkaagiCgsDlhilkgg..kelevklplilGHEivGeveevgpevkklkvGdrVv 60 
                 p++vl+++k++g+C++Dlh ++g+  + +   +p+++GHE++G+ ++vg++v+++kvGd+V 
  KOO22311.1  45 PNDVLLDMKYCGVCHTDLHSAQGQlaALTGKCYPCVPGHELAGVAVAVGDAVTRVKVGDHVG 106
                 589********************998888999****************************97 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 0.83
                 -SSSBSEEEECGGGEE CS
       ADH_N  92 dGgfaeyvvvpekklv 107
                  Gg+++++vv+e+++v
  KOO22311.1 109 LGGYSDKMVVHERFAV 124
                 69*********99876 PP

>> ADH_zinc_N_2  Zinc-binding dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.0       4.3   1.1e+04      99     115 ..     119     135 ..     115     136 .. 0.78
   2 !   20.8   0.0   2.4e-07   0.00063       2     124 ..     200     317 ..     199     327 .. 0.78

  Alignments for each domain:
  == domain 1  score: -2.6 bits;  conditional E-value: 4.3
                   HHH----EEEEEEGGGH CS
  ADH_zinc_N_2  99 eGklrpvvdrvfpleea 115
                   ++++ + + +++ple a
    KOO22311.1 119 HERFAVIIPKTYPLECA 135
                   567889999*****965 PP

  == domain 2  score: 20.8 bits;  conditional E-value: 2.4e-07
                   T-SEEEETT.STTHHHHH-TT-EEEEEES-HHHHH.HHHHHHEEEEEEEEE--.--.S-EEE-CHHHCTTT-EEEE--GGG...-.-HHHHHHHHHH CS
  ADH_zinc_N_2   2 GAdevidyr.tedfeaatggegvDvvldtvggealleaslkvlpggGrlvsig.gpplsaallkpakkrkgrsvkyeflfsmkasaqadileelaal 96 
                   GAdevi ++ +e++ +a + ++ D+vl+t+ +e+ ++   ++l+ggGr +++g ++ l a++  + +  ++ +v  + +       + ++ +++ +l
    KOO22311.1 200 GADEVIVSTdAEQMLRARRARALDLVLNTIPSEHDYSPYTALLSGGGRQIMLGlNTGLIAGMVVNGLCCGRSRVAGSGIG------GIEATQAVIDL 290
                   9*****7777888887777899*********7777799998999*9******9665555555555554444445555554......5555899**** PP

                   HHHHH----EEEEEEGGGHHHHHHHHHS CS
  ADH_zinc_N_2  97 ieeGklrpvvdrvfpleeaaeAhryles 124
                   ++++ ++p +  v p e++++ ++ le+
    KOO22311.1 291 CDKHGIKPFIK-VVPVENLNRVYEELEK 317
                   **********7.9****99999999987 PP

>> AlaDh_PNT_C  Alanine dehydrogenase/PNT, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.3   0.2   2.1e-07   0.00054      29      99 ..     158     229 ..     152     238 .. 0.83
   2 ?   -0.9   0.9      0.32   8.1e+02      23      47 ..     263     287 ..     251     295 .. 0.79

  Alignments for each domain:
  == domain 1  score: 19.3 bits;  conditional E-value: 2.1e-07
                  -EEEEESTSHHHHHHHHHHHHTT-EEEEEESSHHHHHHHHHTTTCECEEHCHHHH.HHHHHHHH-SEEEE-- CS
  AlaDh_PNT_C  29 akvlviGgGvaGlqAiatakglgakVtvlDvrparleqleslgakfvevlksqee.llaeavkeadvvigtv 99 
                   +v ++G+G  G+  i++ak+lg +Vt++   + ++   +++ga  v v +  e+ l a++++  d+v  t+
   KOO22311.1 158 TRVAIVGVGGLGQMGIRIAKALGCVVTAITRTAGKADFARECGADEVIVSTDAEQmLRARRARALDLVLNTI 229
                  69***************************9999999999999999777755544405567889999999886 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 0.32
                  ETCB---EEEEESTSHHHHHHHHHH CS
  AlaDh_PNT_C  23 vpgvepakvlviGgGvaGlqAiata 47 
                  v+g   ++  v G G+ G++A ++ 
   KOO22311.1 263 VNGLCCGRSRVAGSGIGGIEATQAV 287
                  6788889999**********98765 PP

>> 2-Hacid_dh_C  D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.5   0.3     4e-07     0.001      35      76 ..     156     197 ..     150     224 .. 0.82

  Alignments for each domain:
  == domain 1  score: 18.5 bits;  conditional E-value: 4e-07
                   TTSEEEEES-SHHHHHHHHHHHHTT-EEEEESSSHHHHHCHH CS
  2-Hacid_dh_C  35 sgktvGiiGlGrIGqavakrlkafgmkviaydrskkkeeeee 76 
                   +g +v+i+G+G +Gq  ++++ka+g+ v+a+ r+  k + ++
    KOO22311.1 156 KGTRVAIVGVGGLGQMGIRIAKALGCVVTAITRTAGKADFAR 197
                   6899*****************************988666333 PP

>> TrkA_N  TrkA-N domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.1     5e-05      0.13       3      73 ..     165     232 ..     160     244 .. 0.84

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 5e-05
                 EES-SHHHHHHHHHHHHTTEEEEEEESSHHHHHHHHHTTSEEEES-TTSHHHHHHTTGGGESEEEE-SSSH CS
      TrkA_N   3 iiGlGrvGrslaeeLseggkdvvvidkdeerveelreeglevvvgdatdeevLeeagiekadaviaatgdd 73 
                 + GlG++G ++a+ L  g+  v++i +   +++ +re g++ v+ +   e++L++  +   d+v+ ++++ 
  KOO22311.1 165 VGGLGQMGIRIAKAL--GCV-VTAITRTAGKADFARECGADEVIVSTDAEQMLRARRARALDLVLNTIPSE 232
                 446777777777777..895.********************999999999**************9999976 PP

>> CoA_binding  CoA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.9   0.3    0.0019       4.8       3      46 ..     157     200 ..     155     251 .. 0.69
   2 ?    4.4   0.0     0.023        60      39      82 ..     272     315 ..     242     324 .. 0.87

  Alignments for each domain:
  == domain 1  score: 7.9 bits;  conditional E-value: 0.0019
                  TEEEEEETTTSHHHHHHHHHHHHHHECEEEEEEC-TT.TTTCEET CS
  CoA_binding   3 dtkviviGagglgiaglyhfkeklkygikavfgvnpr.kvgtevl 46 
                   t+v+++G+ggl ++++ ++++ l++ ++a+  + ++ ++++e +
   KOO22311.1 157 GTRVAIVGVGGL-GQMGIRIAKALGCVVTAITRTAGKaDFARECG 200
                  59**********.66667778888887777777766656666665 PP

  == domain 2  score: 4.4 bits;  conditional E-value: 0.023
                  TTTTCEETTEEEESCHHHHHHHCTTTEEEEES-HHHHHHHHHHH CS
  CoA_binding  39 rkvgtevlglpvyksvdeleektevdvavitvPaesaqeavdel 82 
                  r +g+ ++g+++ ++v +l +k++++  + +vP e+   + +el
   KOO22311.1 272 RVAGSGIGGIEATQAVIDLCDKHGIKPFIKVVPVENLNRVYEEL 315
                  678999******************99999999999998888887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (375 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       521  (0.0290591); expected 358.6 (0.02)
Passed bias filter:                      380  (0.0211947); expected 358.6 (0.02)
Passed Vit filter:                        54  (0.00301188); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.49u 0.27s 00:00:00.76 Elapsed: 00:00:00.41
# Mc/sec: 2713.53
//
Query:       KOO22312.1  [L=317]
Description: hypothetical protein Ctob_001368, partial [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.8e-52  173.9   5.0      7e-13   48.1   0.0    5.6  6  Arm              Armadillo/beta-catenin-like repeat
      2e-18   66.5   2.6    3.2e-11   43.5   0.0    3.6  4  HEAT_EZ          HEAT-like repeat
    4.8e-17   62.2   0.4    1.8e-16   60.3   0.3    2.0  2  IBB              Importin beta binding domain
    2.1e-10   39.9   2.5    9.9e-06   25.4   0.0    4.5  4  HEAT             HEAT repeat
    2.2e-10   40.8   0.1      1e-06   29.0   0.0    3.9  4  HEAT_2           HEAT repeats
    0.00023   21.5   0.1       0.17   12.6   0.0    3.8  3  HEAT_PBS         PBS lyase HEAT-like repeat
     0.0028   17.7   0.0       0.22   11.6   0.0    2.3  2  V-ATPase_H_C     V-ATPase subunit H
     0.0034   17.4   0.0      0.076   13.0   0.0    2.4  2  Atx10homo_assoc  Spinocerebellar ataxia type 10 protein domai
  ------ inclusion threshold ------
      0.018   15.2   0.2       0.81   10.0   0.1    3.0  3  RICTOR_V         Rapamycin-insensitive companion of mTOR, dom
        0.1   12.1   0.0       0.35   10.3   0.0    1.7  2  Arm_2            Armadillo-like
       0.27    9.8   0.0       0.34    9.4   0.0    1.2  1  Adaptin_N        Adaptin N terminal region


Domain annotation for each model (and alignments):
>> Arm  Armadillo/beta-catenin-like repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.0       3.7     6e+03      22      33 ..      80      91 ..      74      92 .. 0.78
   2 !   44.1   0.0     8e-15   1.3e-11       2      41 .]     103     143 ..     102     143 .. 0.96
   3 !   48.1   0.0   4.3e-16     7e-13       2      40 ..     146     184 ..     145     185 .. 0.96
   4 !   38.5   0.1   4.6e-13   7.5e-10       1      41 []     187     228 ..     187     228 .. 0.98
   5 !   19.4   0.0   4.8e-07   0.00079       9      41 .]     238     269 ..     230     269 .. 0.88
   6 !   21.6   0.0   9.7e-08   0.00016       1      40 [.     271     310 ..     271     311 .. 0.96

  Alignments for each domain:
  == domain 1  score: -2.5 bits;  conditional E-value: 3.7
                TTSSHHHHHHHH CS
         Arm 22 ssedeevqeeAa 33
                +s+d++ q +A+
  KOO22312.1 80 NSDDPNHQLPAV 91
                499999999997 PP

  == domain 2  score: 44.1 bits;  conditional E-value: 8e-15
                 HHHHHHHHHTTHHHHHHHHTT.TSSHHHHHHHHHHHHHHTT CS
         Arm   2 senkdavieaGavppLvrLLs.sedeevqeeAawALsNLaa 41 
                 s+++ +vi aG+vp++v++L+  +++++q+eAawAL+N+a+
  KOO22312.1 103 SPPIAEVIAAGVVPRFVQFLQcADNPMLQFEAAWALTNIAS 143
                 689************************************96 PP

  == domain 3  score: 48.1 bits;  conditional E-value: 4.3e-16
                 HHHHHHHHHTTHHHHHHHHTTTSSHHHHHHHHHHHHHHT CS
         Arm   2 senkdavieaGavppLvrLLssedeevqeeAawALsNLa 40 
                 se++++vi  Gavp++v+LL s++++v+e+A+wAL+N+a
  KOO22312.1 146 SEHTRMVIANGAVPIFVQLLMSPNDDVREQAVWALGNIA 184
                 899***********************************8 PP

  == domain 4  score: 38.5 bits;  conditional E-value: 4.6e-13
                 SHHHHHHHHHTTHHHHHHHHTT.TSSHHHHHHHHHHHHHHTT CS
         Arm   1 nsenkdavieaGavppLvrLLs.sedeevqeeAawALsNLaa 41 
                 ++e++d+v  + ++ppL++ L+   + +++++A+w+LsN+++
  KOO22312.1 187 SPECRDLVLGHHVLPPLLEQLNpQSKMSMLRNATWTLSNMCR 228
                 69***************************************7 PP

  == domain 5  score: 19.4 bits;  conditional E-value: 4.8e-07
                 HHTTHHHHHHHHTTTSSHHHHHHHHHHHHHHTT CS
         Arm   9 ieaGavppLvrLLssedeevqeeAawALsNLaa 41 
                 + a a+p+L +L  s d+ev+ + +wALs+L++
  KOO22312.1 238 V-APALPVLAQLVFSNDDEVLADGCWALSYLSD 269
                 5.669**************************95 PP

  == domain 6  score: 21.6 bits;  conditional E-value: 9.7e-08
                 SHHHHHHHHHTTHHHHHHHHTTTSSHHHHHHHHHHHHHHT CS
         Arm   1 nsenkdavieaGavppLvrLLssedeevqeeAawALsNLa 40 
                 ++e ++av + G+  + v+L+ ++  +vq++A+++ +N+ 
  KOO22312.1 271 SNEKIQAVLDTGICARIVELMGHPPASVQTPALRTAGNIV 310
                 6899**********************************96 PP

>> HEAT_EZ  HEAT-like repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.0       3.3   5.4e+03      15      29 ..      77      90 ..      70      99 .. 0.53
   2 !   43.5   0.0   1.9e-14   3.2e-11       1      55 []     128     183 ..     128     183 .. 0.95
   3 ?    3.9   0.0      0.05        82      24      55 .]     198     226 ..     194     226 .. 0.71
   4 !   20.9   0.1   2.3e-07   0.00038       5      55 .]     217     267 ..     213     267 .. 0.92

  Alignments for each domain:
  == domain 1  score: -1.9 bits;  conditional E-value: 3.3
     HEAT_EZ 15 aggepellqplvpei 29
                +g+++++ + ++p +
  KOO22312.1 77 EGVNSDDPNHQLP-A 90
                4444455554444.4 PP

  == domain 2  score: 43.5 bits;  conditional E-value: 1.9e-14
     HEAT_EZ   1 wrvRraAawaLGrlaggepellqp.lvpeilpaLlalLnddsdeVRaaAagaLgnl 55 
                 + +++ AawaL ++a+g +e+ +      ++p +++lL++++d+VR++A++aLgn+
  KOO22312.1 128 PMLQFEAAWALTNIASGTSEHTRMvIANGAVPIFVQLLMSPNDDVREQAVWALGNI 183
                 5799*******99********9998999**************************98 PP

  == domain 3  score: 3.9 bits;  conditional E-value: 0.05
     HEAT_EZ  24 plvpeilpaLlalLnddsd..eVRaaAagaLgnl 55 
                  ++p +l +L      +++  +   +A ++L+n+
  KOO22312.1 198 HVLPPLLEQLN-----PQSkmSMLRNATWTLSNM 226
                 55666666666.....7774455*********97 PP

  == domain 4  score: 20.9 bits;  conditional E-value: 2.3e-07
     HEAT_EZ   5 raAawaLGrlaggepellqplvpeilpaLlalLnddsdeVRaaAagaLgnl 55 
                 r+A w+L++++ g p+    +v  +lp L++l  + +deV a  ++aL+ l
  KOO22312.1 217 RNATWTLSNMCRGKPQPAWHMVAPALPVLAQLVFSNDDEVLADGCWALSYL 267
                 89******888888888888****************************975 PP

>> IBB  Importin beta binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.3   0.3   1.1e-19   1.8e-16       7      90 .]      14      92 ..      10      92 .. 0.82
   2 ?   -3.5   0.0         9   1.5e+04      70      84 ..     242     256 ..     238     259 .. 0.80

  Alignments for each domain:
  == domain 1  score: 60.3 bits;  conditional E-value: 1.1e-19
                XXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX...........XXXXXXXXXXXX-----TT--------HHHHH CS
         IBB  7 nkgkdaeelRrrReeeqvelRKqkreeqllKrRnvaaeaaaeeeadseeeeeessaeekkleeleemvqgvnSddpelqleatq 90
                nk+ d++e+Rr Ree+++ lRK+kr eql K+Rn++  a+a ++++      +  +++ ++ +  ++v+gvnSddp++ql a++
  KOO22312.1 14 NKTLDKDEARRNREETTISLRKEKRAEQLDKKRNMSG-ATAVSSHTL----PNVGSQAWLEANPAQLVEGVNSDDPNHQLPAVT 92
                8899*******************************33.222222222....345667788899999**************9986 PP

  == domain 2  score: -3.5 bits;  conditional E-value: 9
                 X-----TT------- CS
         IBB  70 leemvqgvnSddpel 84 
                 l+ + q v+S+d e+
  KOO22312.1 242 LPVLAQLVFSNDDEV 256
                 677889999999875 PP

>> HEAT  HEAT repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.4   0.0   0.00082       1.3       1      30 [.     114     144 ..     114     145 .. 0.94
   2 !   25.4   0.0   6.1e-09   9.9e-06       2      28 ..     158     184 ..     157     186 .. 0.96
   3 ?   -0.1   0.1      0.93   1.5e+03      18      29 ..     217     228 ..     199     229 .. 0.63
   4 ?    0.7   0.0      0.53   8.6e+02       2      28 ..     242     268 ..     241     271 .. 0.82

  Alignments for each domain:
  == domain 1  score: 9.4 bits;  conditional E-value: 0.00082
                 HHHHHHHHH.T-SSHHHHHHHHHHHHHHHHC CS
        HEAT   1 llPlllkll.sDpspeVReaAakaLgalaev 30 
                 ++P +++ l + ++p     Aa+aL+++a++
  KOO22312.1 114 VVPRFVQFLqCADNPMLQFEAAWALTNIASG 144
                 58999************************86 PP

  == domain 2  score: 25.4 bits;  conditional E-value: 6.1e-09
                 HHHHHHHHT-SSHHHHHHHHHHHHHHH CS
        HEAT   2 lPlllkllsDpspeVReaAakaLgala 28 
                 +P++++ll++p+ +VRe A++aLg++a
  KOO22312.1 158 VPIFVQLLMSPNDDVREQAVWALGNIA 184
                 79***********************98 PP

  == domain 3  score: -0.1 bits;  conditional E-value: 0.93
                 HHHHHHHHHHHH CS
        HEAT  18 eaAakaLgalae 29 
                 ++A ++L ++++
  KOO22312.1 217 RNATWTLSNMCR 228
                 567788887775 PP

  == domain 4  score: 0.7 bits;  conditional E-value: 0.53
                 HHHHHHHHT-SSHHHHHHHHHHHHHHH CS
        HEAT   2 lPlllkllsDpspeVReaAakaLgala 28 
                 lP+l +l  +++ eV +  ++aL  l+
  KOO22312.1 242 LPVLAQLVFSNDDEVLADGCWALSYLS 268
                 899999999999999888888887665 PP

>> HEAT_2  HEAT repeats
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.4   0.0   0.00041      0.67      31      60 ..     113     143 ..      72     152 .. 0.68
   2 !   29.0   0.0   6.2e-10     1e-06       2      62 ..     116     189 ..     115     224 .. 0.76
   3 !    6.1   0.0    0.0088        14       1      67 [.     200     278 ..     200     282 .. 0.74
   4 ?    3.4   0.0      0.06        98       3      58 ..     244     309 ..     242     316 .. 0.67

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00041
      HEAT_2  31 ealpaLvelled.edpavRraaaeaLgaigd 60 
                  ++p +v++l++ ++p+ + +aa+aL  i++
  KOO22312.1 113 GVVPRFVQFLQCaDNPMLQFEAAWALTNIAS 143
                 679*******87477***********99864 PP

  == domain 2  score: 29.0 bits;  conditional E-value: 6.2e-10
      HEAT_2   2 daLlqalendpdpevrraairaLgrignp...........ealpaLvellededpavRraaaeaLgaig..dpe 62 
                 + ++q+l+   +p ++ +a++aL +i++             a+p++v+ll +++ +vR++a++aLg i+  +pe
  KOO22312.1 116 PRFVQFLQCADNPMLQFEAAWALTNIASGtsehtrmvianGAVPIFVQLLMSPNDDVREQAVWALGNIAgdSPE 189
                 678999*99999************998876677777777788************************99633243 PP

  == domain 3  score: 6.1 bits;  conditional E-value: 0.0088
      HEAT_2   1 ldaLlqalendpdpevrraairaLgrignp..........ealpaLvellededpavRraaaeaLgai..gdpealpaL 67 
                 l++Ll++l   +     r+a ++L ++              alp L +l+ + d +v +  ++aL+ +  g++e ++a 
  KOO22312.1 200 LPPLLEQLNPQSKMSMLRNATWTLSNMCRGkpqpawhmvaPALPVLAQLVFSNDDEVLADGCWALSYLsdGSNEKIQAV 278
                 688999996677778999999999966433224555555556********99999999999999998844457777665 PP

  == domain 4  score: 3.4 bits;  conditional E-value: 0.06
      HEAT_2   3 aLlqalendpdpevrraairaLg......rignp........ealpaLvellededpavRraaaeaLgai 58 
                 +L  +l+ + d+ev +  ++aL       +   +         + + +vel+ ++ + v+  a +++g i
  KOO22312.1 244 VLA-QLVFSNDDEVLADGCWALSylsdgsN---EkiqavldtGICARIVELMGHPPASVQTPALRTAGNI 309
                 444.45588889999999999995444330...2344344336689999999999999999888888876 PP

>> HEAT_PBS  PBS lyase HEAT-like repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.3   0.0      0.22   3.6e+02       2      14 ..     131     143 ..     130     164 .. 0.85
   2 !   12.6   0.0   0.00011      0.17       1      19 [.     172     192 ..     172     208 .. 0.73
   3 ?    1.6   0.0      0.39   6.4e+02       3      23 ..     217     247 ..     216     250 .. 0.80

  Alignments for each domain:
  == domain 1  score: 2.3 bits;  conditional E-value: 0.22
                 HHHHHHHHHHCTS CS
    HEAT_PBS   2 RraAakaLgqlgd 14 
                 + +Aa+aL ++ +
  KOO22312.1 131 QFEAAWALTNIAS 143
                 568*****88875 PP

  == domain 2  score: 12.6 bits;  conditional E-value: 0.00011
                 HHHHHHHHHHHCTS..GGGHH CS
    HEAT_PBS   1 vRraAakaLgqlgd..eeaip 19 
                 vR  A++aLg++    +e+ +
  KOO22312.1 172 VREQAVWALGNIAGdsPECRD 192
                 8************99944443 PP

  == domain 3  score: 1.6 bits;  conditional E-value: 0.39
                 HHHHHHHHHCTS..........GGGHHHHHH CS
    HEAT_PBS   3 raAakaLgqlgd..........eeaipaLle 23 
                 r+A++ L ++              a+p+L +
  KOO22312.1 217 RNATWTLSNMCRgkpqpawhmvAPALPVLAQ 247
                 799****999988888877777778887766 PP

>> V-ATPase_H_C  V-ATPase subunit H
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.9   0.0     0.034        56      65     112 ..     136     183 ..     110     187 .. 0.73
   2 !   11.6   0.0   0.00013      0.22      47     113 ..     245     310 ..     239     313 .. 0.91

  Alignments for each domain:
  == domain 1  score: 3.9 bits;  conditional E-value: 0.034
  V-ATPase_H_C  65 nDigelvkllpegkkvleklkaKekimellehedeevkyeALkavqkl 112
                     ++++++ ++e  +++   +a    ++ll +++++v+ +A  a+ ++
    KOO22312.1 136 WALTNIASGTSEHTRMVIANGAVPIFVQLLMSPNDDVREQAVWALGNI 183
                   5566666666677777777777888899*************9998765 PP

  == domain 2  score: 11.6 bits;  conditional E-value: 0.00013
  V-ATPase_H_C  47 LiklleeskdktvlavalnDigelvkllpegkkvleklkaKekimellehedeevkyeALkavqkll 113
                   L++l+  s+d++vla  +  ++ l +  +e+ + + ++++ ++i+el+ h+ ++v+  AL++  +++
    KOO22312.1 245 LAQLV-FSNDDEVLADGCWALSYLSDGSNEKIQAVLDTGICARIVELMGHPPASVQTPALRTAGNIV 310
                   77777.5889999999**********************************************98887 PP

>> Atx10homo_assoc  Spinocerebellar ataxia type 10 protein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.5   0.0      0.19   3.1e+02      40      66 ..     125     151 ..     112     156 .. 0.85
   2 !   13.0   0.0   4.7e-05     0.076       2      61 ..     173     231 ..     172     239 .. 0.91

  Alignments for each domain:
  == domain 1  score: 1.5 bits;  conditional E-value: 0.19
  Atx10homo_assoc  40 dnnPfirewailairnLlegneenqel 66 
                      ++nP+++  a +a+ n+  g++e  ++
       KOO22312.1 125 ADNPMLQFEAAWALTNIASGTSEHTRM 151
                      58***************9998886554 PP

  == domain 2  score: 13.0 bits;  conditional E-value: 4.7e-05
  Atx10homo_assoc   2 KrelvrllgnlvyknkevqdkvreldgleliLsqcniDdnnPfirewailairnLlegne 61 
                      +++ v  lgn++ +++e++d v  ++ l+ +L+q n +++  ++r+ a++++ n++ g +
       KOO22312.1 173 REQAVWALGNIAGDSPECRDLVLGHHVLPPLLEQLNPQSKMSMLRN-ATWTLSNMCRGKP 231
                      7788999*******************************99999885.99*******9876 PP

>> RICTOR_V  Rapamycin-insensitive companion of mTOR, domain 5
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   0.1    0.0005      0.81       7      57 ..     135     185 ..     133     193 .. 0.86
   2 ?    7.1   0.0    0.0038       6.2       5      49 ..     175     220 ..     170     230 .. 0.72
   3 ?   -0.8   0.0       1.1   1.9e+03       8      38 ..     262     293 ..     261     298 .. 0.72

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.0005
    RICTOR_V   7 LWaiGhigsselGie.lldeydivedivelaeespvlslRGtafyvLgliss 57 
                  Wa+ +i+s ++  + ++  + +v+ +v+l   sp+  +R  a+++Lg i+ 
  KOO22312.1 135 AWALTNIASGTSEHTrMVIANGAVPIFVQLL-MSPNDDVREQAVWALGNIAG 185
                 5********888888788889*******987.89**************9986 PP

  == domain 2  score: 7.1 bits;  conditional E-value: 0.0038
    RICTOR_V   5 aaLWaiGhigsselGie.lldeydivedivelaeespvlslRGtaf 49 
                 +a Wa+G+i+     ++ l+  +++++ ++e  + ++ +s+   a 
  KOO22312.1 175 QAVWALGNIAGDSPECRdLVLGHHVLPPLLEQLNPQSKMSMLRNAT 220
                 799******9866666668877888888888777777766655555 PP

  == domain 3  score: -0.8 bits;  conditional E-value: 1.1
    RICTOR_V   8 WaiGhigs.selGie.lldeydivedivelaee 38 
                 Wa+ +    s++ i+ +ld+  i  +ivel+ +
  KOO22312.1 262 WALSYLSDgSNEKIQaVLDT-GICARIVELMGH 293
                 66666665567778856776.999999999765 PP

>> Arm_2  Armadillo-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.0   0.00021      0.35      16      82 ..     117     184 ..     107     195 .. 0.86
   2 ?   -0.8   0.0      0.53   8.6e+02      58     129 ..     244     316 ..     189     317 .] 0.58

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.00021
       Arm_2  16 kllalLkssedpliqeialltlgnsaaysvnq.diirdlggitiianllsksnaevkekalnalnnls 82 
                 + ++ L+ +++p++q  a  +l+n a  +  +  ++   g ++i  +ll ++n  v+e+a+ al n +
  KOO22312.1 117 RFVQFLQCADNPMLQFEAAWALTNIASGTSEHtRMVIANGAVPIFVQLLMSPNDDVREQAVWALGNIA 184
                 57899******************9998776652578889*************************9875 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 0.53
       Arm_2  58 iianllsksnaevkekalnalnnlsenvenqkkikvyv.nqvckdiv..ssplNsevQlagLklltnlsvtneyq 129
                 ++a+l+ +++ ev      al  ls++++++  i++ +   +c  iv  +    ++vQ  +L+  +n+ + +++q
  KOO22312.1 244 VLAQLVFSNDDEVLADGCWALSYLSDGSNEK--IQAVLdTGICARIVelMGHPPASVQTPALRTAGNIVTGDDHQ 316
                 5555555555555555555555555544332..222220234444431123334566666666666666666665 PP

>> Adaptin_N  Adaptin N terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   0.0   0.00021      0.34     125     295 ..     125     310 ..      74     316 .. 0.67

  Alignments for each domain:
  == domain 1  score: 9.4 bits;  conditional E-value: 0.00021
                 -SSHHHHHHHHHHHHHCCCCCHHCCCC...C.HHHHHHHCTT-SSHHHHHHHHHHHHHHHCCCCCCC.HHHHHHHCCHHHHHHCS-HHHHHHHHH.... CS
   Adaptin_N 125 drspyvrkkAalailklykkdpdllrk...q.lveeikellsdkdpgvvlaAvalleeikkndrlll.kllpklvrrLcnllteldpwlqvkiik.... 214
                  ++p+++ +Aa a++ + + +++  r+   +  v+ +++ll + +  v   Av +l  i   d   + +l+  + + L  ll++l+p  ++ +++    
  KOO22312.1 125 ADNPMLQFEAAWALTNIASGTSEHTRMviaNgAVPIFVQLLMSPNDDVREQAVWALGNI-AGDSPECrDLVLGH-HVLPPLLEQLNPQSKMSMLRnatw 221
                 45667777777777777777666555411133477888888888888888888888888.55555555444333.233445577777777777774444 PP

                 HHCC---SSHHHH..HHHHHHHCGGCG....CSSCHHHHHHHHHCCHCCCCST......HHHCCHHCHHHHHHSSCCTCHHHHHCHHHHHH CS
   Adaptin_N 215 lltrlarqepeerskkellesllnllq....ssnnaVlletvnlivelapkne......livlavnaLvrllsskdenlryvaLrtllkiv 295
                 +l++++r +p+ + +  ++   l+ l+    s  + Vl   + ++ +l++ ++      l + ++ + v+l+ +++ +++  aLrt   iv
  KOO22312.1 222 TLSNMCRGKPQPAWH--MVAPALPVLAqlvfSNDDEVLADGCWALSYLSDGSNekiqavLDTGICARIVELMGHPPASVQTPALRTAGNIV 310
                 566888888888855..55555555555555888888888888888777766666666655567777888888888888888887766665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (317 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       604  (0.0336884); expected 358.6 (0.02)
Passed bias filter:                      457  (0.0254894); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.50u 0.28s 00:00:00.78 Elapsed: 00:00:00.44
# Mc/sec: 2176.24
//
Query:       KOO22313.1  [L=369]
Description: udp-n-acetylglucosamine [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.9e-57  194.8   3.8    2.2e-57  194.6   3.8    1.0  1  Nuc_sug_transp  Nucleotide-sugar transporter
    9.9e-05   21.8   0.4    9.9e-05   21.8   0.4    2.6  2  TPT             Triose-phosphate Transporter family
    0.00063   19.9  21.5     0.0011   19.1   3.6    2.5  2  EamA            EamA-like transporter family
  ------ inclusion threshold ------
      0.023   13.9   7.8       0.55    9.4   7.8    2.1  1  UAA             UAA transporter family


Domain annotation for each model (and alignments):
>> Nuc_sug_transp  Nucleotide-sugar transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  194.6   3.8     5e-61   2.2e-57       4     314 ..      52     365 ..      49     366 .. 0.91

  Alignments for each domain:
  == domain 1  score: 194.6 bits;  conditional E-value: 5e-61
  Nuc_sug_transp   4 klkyislvvlvvqnaslvltlrYartkedkerylsttavllaeilklvvclllllkeekskvkkllrelkkeilakpkdtlklavPsliYtvqnn 98 
                     +++ +++++l +q a++ l  rY+     ke + ++++    e +k  v+l+ +    + +  + + +l++++ +   d+ k+avP++iY   n+
      KOO22313.1  52 RVRTLCVALLCMQYAAYALLRRYSTGI-LKEPWSAASVLGAGEAIKFGVSLFNIGMWPGASE-APQGSLSERMCSLILDSGKMAVPAFIYLAMNF 144
                     678899******************999.78889999889999******99987666665555.78999*************************** PP

  Nuc_sug_transp  99 llyvalsnLdaatyqvtyqlkilttalfsvllLkrklskkqWlslllLvaGvalvqlkqkeseesekaaaaa..........keensvlGliavl 183
                     l +v+ls++da+t+ +  q k++ ta+++ l+L+r+ls  +W  l+ Lv+Gv l+ l+++ s +    +a++          +++ + +G++av 
      KOO22313.1 145 LGFVSLSRVDAGTFAIVQQSKVFFTAALQRLMLGRTLSVPKWGILTTLVLGVCLISLESQPSRACAGGSAETaaaaaslsawSSSAYAVGVAAVF 239
                     *********************************************************99988664433222235668999999999********* PP

  Nuc_sug_transp 184 aacllsgfaGvYfekiLkdsnvslWirniqlallsiilalltvllkdgskisekGffkGydlvvwvvvllqavGGlvvavvvkyaDnilkgfats 278
                     +   lsgfa vYfek+Lk++  ++W rn+qla+ s+++ l    l+d+ +      f+G+  v+ v+ ll a+GG++va+v+k+aD + k++at+
      KOO22313.1 240 TDSALSGFATVYFEKMLKTTRLTVWDRNLQLAFWSMLIYLP-WALYDNPS----EPFFGWSAVTAVLALLGALGGILVALVIKHADGLAKNLATA 329
                     ***********************************998776.55666543....4699************************************* PP

  Nuc_sug_transp 279 laiilstvasvllldlkitllFllGallviaavflY 314
                      +i+l+t as ll+   ++   +lG l+v+++ f Y
      KOO22313.1 330 SSIVLTTGASHLLFSGPMSAEIILGCLVVVISGFTY 365
                     ********************************9999 PP

>> TPT  Triose-phosphate Transporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.8   0.4   2.2e-08   9.9e-05      67     137 ..     131     201 ..     115     223 .. 0.93
   2 ?    0.5   1.3     0.069   3.1e+02     246     289 ..     322     365 ..     233     366 .. 0.71

  Alignments for each domain:
  == domain 1  score: 21.8 bits;  conditional E-value: 2.2e-08
         TPT  67 ailplalvktlghvlavvslskvaVSfthtvKasePiFtvilsrlllgeklsllvylsLlpivgGvalasv 137
                 ++ + a++ ++ ++l+ vsls+v      +v  s+ +Ft++l rl+lg +ls+ ++  L  +v Gv l s+
  KOO22313.1 131 KMAVPAFIYLAMNFLGFVSLSRVDAGTFAIVQQSKVFFTAALQRLMLGRTLSVPKWGILTTLVLGVCLISL 201
                 56778999999************998888***************************************997 PP

  == domain 2  score: 0.5 bits;  conditional E-value: 0.069
         TPT 246 vthsvantvKrvvvIvlsvlvfknpvsllnaiGtavaivGvflY 289
                 ++  +a ++  v+   +s l+f  p+s   ++G+ v+++  f Y
  KOO22313.1 322 LAKNLATASSIVLTTGASHLLFSGPMSAEIILGCLVVVISGFTY 365
                 44555566666666777778888888888888888777777766 PP

>> EamA  EamA-like transporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.1   3.6   2.6e-07    0.0011      75     136 ..     139     200 ..     130     201 .. 0.92
   2 !    6.1  10.0    0.0026        12       3     131 ..     234     361 ..     232     364 .. 0.83

  Alignments for each domain:
  == domain 1  score: 19.1 bits;  conditional E-value: 2.6e-07
        EamA  75 tvlafllffyalkktsasnaslitslePvftlilsvlllgekltlkqllgivlillGvllil 136
                  +++++l f +l++++a++ ++++   + ft+ l  l lg +l++ ++  +   +lGv+li+
  KOO22313.1 139 YLAMNFLGFVSLSRVDAGTFAIVQQSKVFFTAALQRLMLGRTLSVPKWGILTTLVLGVCLIS 200
                 556778999***************************************************97 PP

  == domain 2  score: 6.1 bits;  conditional E-value: 0.0026
        EamA   3 gillallaalfwaiyfvlskillrkv......spltltfvrfliagillliiallkegklaklslkdwllllllgllgtvlafllffyalkktsasnas 95 
                 g+  +++ + ++++++v+  ++l+++        l+l+f+++    ++ l++al+   +    +  +w ++  + +l ++l+ +l    +k+ +     
  KOO22313.1 234 GVAAVFTDSALSGFATVYFEKMLKTTrltvwdRNLQLAFWSM----LIYLPWALYDNPSE---PFFGWSAVTAVLALLGALGGILVALVIKHADGLAKN 325
                 67778888999********99998887755555567777777....58999999999999...67777777444456666777899999********** PP

        EamA  96 litslePvftlilsvlllgekltlkqllgivlillG 131
                 l+t+ + v+t+  s+ll+  +++   +lg+++++++
  KOO22313.1 326 LATASSIVLTTGASHLLFSGPMSAEIILGCLVVVIS 361
                 *******************************99986 PP

>> UAA  UAA transporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   7.8   0.00012      0.55      71     300 ..     138     367 ..     131     369 .] 0.71

  Alignments for each domain:
  == domain 1  score: 9.4 bits;  conditional E-value: 0.00012
         UAA  71 lffitsvlnnealkydisvPvhiifrssklipvmilGililgkrYsllqylsvllltlGviiftllsakdk.............kedskeslnkfllGi 156
                 + ++++ l   +l+  +   +  i++ sk+  +  l  l+lg++ s+ +   ++ l+lGv + +l s+++              ++ s  s +   +G+
  KOO22313.1 138 IYLAMNFLGFVSLSR-VDAGTFAIVQQSKVFFTAALQRLMLGRTLSVPKWGILTTLVLGVCLISLESQPSRacaggsaetaaaaASLSAWSSSAYAVGV 235
                 556666677777777.777788899999999**********************************888888*****99985544444444445555555 PP

         UAA 157 allvlallldavlglvqeklykkygkhskealfyshllslplflllqgellsavkflsesedvallslpsklfylllnvltqyvcikgVlilisefgal 255
                 a ++   +l+++  ++ ek+ k    +  +  +   ++s+++ l         +++  + ++  +        + ++++l+++++   V + i++ + l
  KOO22313.1 236 AAVFTDSALSGFATVYFEKMLKTTRLTVWDRNLQLAFWSMLIYL--------PWALYDNPSEPFF----GWSAVTAVLALLGALGGILVALVIKHADGL 322
                 55555555555555555555555544444444444444444444........2322222222221....122344567788889989999999999999 PP

         UAA 256 tvtlvltlRKfvslllSillFknpltlqhlvgtllVflglllysy 300
                 +  l +    +++   S llF+ p++++ ++g l+V+++ + y +
  KOO22313.1 323 AKNLATASSIVLTTGASHLLFSGPMSAEIILGCLVVVISGFTYQK 367
                 9999999999999999*********************99998865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (369 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       558  (0.0311228); expected 358.6 (0.02)
Passed bias filter:                      263  (0.014669); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.45u 0.25s 00:00:00.70 Elapsed: 00:00:00.39
# Mc/sec: 2842.53
//
Query:       KOO22314.1  [L=358]
Description: myosin light chain kinase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
      1e-49  169.3   0.0    1.3e-49  169.0   0.0    1.0  1  Pkinase         Protein kinase domain
    4.2e-28   98.3   0.0    4.9e-28   98.1   0.0    1.1  1  Pkinase_Tyr     Protein tyrosine kinase
    1.5e-06   28.3   0.0    2.5e-06   27.6   0.0    1.4  1  APH             Phosphotransferase enzyme family
    0.00019   20.8   0.0    0.00039   19.8   0.0    1.5  1  Kinase-like     Kinase-like
    0.00081   18.8   0.0     0.0014   18.1   0.0    1.3  1  Kdo             Lipopolysaccharide kinase (Kdo/WaaP) family
  ------ inclusion threshold ------
      0.013   14.3   0.0      0.022   13.5   0.0    1.2  1  Pkinase_fungal  Fungal protein kinase
       0.13   11.8   0.0       0.23   11.0   0.0    1.3  1  RIO1            RIO1 family


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  169.0   0.0     5e-53   1.3e-49       9     264 .]      27     301 ..      20     301 .. 0.86

  Alignments for each domain:
  == domain 1  score: 169.0 bits;  conditional E-value: 5e-53
                 EESSEEEEEEEETTTTEEEEEEEEECHCHCHHHH...HHHHHHHHHHHHHS.CTTB--EEEEEEESSEEE..EEEE--TTEBHHHHHHHHSS--HHHHH CS
     Pkinase   9 eGsfGkVykaveketgkivAvKkikkekakkkke...kkvlrEikilkklk.hpnivrlyevfeekdely..lvleyveggeladllerkgslseeeak 101
                 eG+fG Vy++++k +  + A K  + +k    ++   +++++E ++l+++  h+ i++ly+++e ++  +  l+le++ ggel+d+l+++g lse+ a 
  KOO22314.1  27 EGGFGIVYRGRDKGETGEEAPKDCAAKKLGLATQqeiENFQKERAMLQRVGgHESIIELYGSVEAPEAATgwLFLEMATGGELFDRLTDSGRLSERAAW 125
                 8***********988877777777666655444445688*************************97766555*************************** PP

                 HHHHHHHHHHHHHHHTTEE-SS-SGGGEEEE.TTTE.EEE-SGTTSEESSSSCS.......BCTTTSCGGGS-HHHHTTSCB.SHHHHHHHHHHHHHHH CS
     Pkinase 102 kiakqilegleylHskgiiHrDlKpeNiLid.ekge.lKitDFGlakelesssk.......ltsfvgtseYlAPEvlkeney.skkvDvWslGvilyel 190
                  +++++++++++++s+g++HrDlK eNi+++  + + +K++DFGla ele +++       + +  gt  Y+APEv ++ +y   k DvW++G++ ++l
  KOO22314.1 126 PFVSRLAKAVAHMFSRGLVHRDLKLENIMLHaADPNaVKVIDFGLAMELEIGEDghlieraVADAAGTAAYRAPEVYHQPSYsPLKLDVWAMGIVTFSL 224
                 *******************************644447***************999**********************999995669************* PP

                 HHSS-STTTSSHHHHHHHHHHT.HHHHHHHCT..SHH...HHHTTS-HHHHHHHHHHT-SSGCCSTTHHHHHTSGGG CS
     Pkinase 191 ltgkppfsgekgkekvekeldq.lekilkilg..etkeklpeaseiseeakdllkkllkkdpkkRltaeellqhpyl 264
                 ++g  p ++ k++++  ++l     + + + +   ++ k ++ +++s+ +k+l++ +l+ d ++Rl+++++  hp++
  KOO22314.1 225 VSGFFPVEEAKDTDRRFRKLAAdQREGIGVCEstFKTYKQQHLNTFSPALKSLIDGMLTIDYTTRLSVKDVEGHPWI 301
                 ********88777765444433233344444445557888999999******************************7 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   98.1   0.0   1.9e-31   4.9e-28       3     213 ..      21     238 ..      19     296 .. 0.85

  Alignments for each domain:
  == domain 1  score: 98.1 bits;  conditional E-value: 1.9e-31
                  EEEEEEEESSEEEEEEEEET.TTTSSEEEEEEEEESTTSSHHHHHHHHHHHHHHHTS.-BTTB--EEEEEE..SSSSEEEEEE--TTEBHHHHHHHTC CS
  Pkinase_Tyr   3 lgkklGeGafGkVvegtlkg.ekekkevkVavKtlkeeateeekeelleeakimkkl.khpnivkllgvct..keepllivteyvkgGdLlkfLrkke 96 
                  +++   eG fG V++g+ kg + e++  ++a K+l   at++e e++ +e ++++++  h+ i++l+g +   ++ + ++ +e+++gG+L + L+++ 
   KOO22314.1  21 ISRPFSEGGFGIVYRGRDKGeTGEEAPKDCAAKKL-GLATQQEIENFQKERAMLQRVgGHESIIELYGSVEapEAATGWLFLEMATGGELFDRLTDS- 116
                  5677889************98889999********.5677777****************************7777779*****************98. PP

                  TTTSBHHHHHHHHHHHHHHHHHHHHTTEEEST-SGGGEEEEE..TTEEEE-STTTHEET..TTSSEE..EETTSSTSGGGGS-HHHHHHSEEE.HHHH CS
  Pkinase_Tyr  97 kekltlkdllsfalqvAkGmeyLeskklvHrdlaarNvLlse..nkvvkisDfGLardi..ekddey..vkkeeaklpvkWmapEslkekkft.sksD 187
                    +l+ +    f+  +Ak+++++ s+ lvHrdl   N++l+    + vk+ DfGLa ++   +d +   ++  +a     + apE+ ++ +++  k D
   KOO22314.1 117 -GRLSERAAWPFVSRLAKAVAHMFSRGLVHRDLKLENIMLHAadPNAVKVIDFGLAMELeiGEDGHLieRAVADAAGTAAYRAPEVYHQPSYSpLKLD 213
                  .9**************************************974478**********99833344444555667788999************984699* PP

                  HHHHHHHHHHHHTTSSGTTTTSHHHH CS
  Pkinase_Tyr 188 vWsfGvllwEiftlgespypglknee 213
                  vW+ G++++ +++ g  p+++ k+++
   KOO22314.1 214 VWAMGIVTFSLVS-GFFPVEEAKDTD 238
                  ************9.999999885544 PP

>> APH  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.6   0.0   9.9e-10   2.5e-06     149     197 ..     120     172 ..      58     179 .. 0.77

  Alignments for each domain:
  == domain 1  score: 27.6 bits;  conditional E-value: 9.9e-10
                 HHH....HHHHHHHH--SSS-EEEE-SS-SGGGEEEC...TTEEEEE---TT-E CS
         APH 149 eeq....vlaalaallpgelptvllHgDlhpgNllvd.pddgrvtGviDfedag 197
                  e+    +  +la+ ++  ++++l+H+Dl++ N++++ +d++ v  viDf++a+
  KOO22314.1 120 SERaawpFVSRLAKAVAHMFSRGLVHRDLKLENIMLHaADPNAV-KVIDFGLAM 172
                 33333336666666666689*****************6555555.9******98 PP

>> Kinase-like  Kinase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.8   0.0   1.5e-07   0.00039     153     285 ..     131     286 ..     106     289 .. 0.73

  Alignments for each domain:
  == domain 1  score: 19.8 bits;  conditional E-value: 1.5e-07
  Kinase-like 153 lirlaanLqakglvhgkftvdnllldek..gglmlggftaLv..ragtkvvlseve.......kgfaPpEllgsrggytrknktkmthkldaWqlGlv 239
                  l + +a++ ++glvh +++ +n++l+      +++ +f+  +    g+ + l e +       +++  pE+  +           +  kld+W++G+v
   KOO22314.1 131 LAKAVAHMFSRGLVHRDLKLENIMLHAAdpNAVKVIDFGLAMelEIGEDGHLIERAvadaagtAAYRAPEVYHQ--------PSYSPLKLDVWAMGIV 220
                  667799*******************8762256999999865411467777754433223434455555555443........67788*********** PP

  Kinase-like 240 iyriwclklPltlateeakeew.....................kfklckkipekvkaLlkkfLqlsq 285
                   +++ +   P+++a++     +                     k ++ +  + ++k L+ ++L  + 
   KOO22314.1 221 TFSLVSGFFPVEEAKD-TDRRFrklaadqregigvcestfktyKQQHLNTFSPALKSLIDGMLTIDY 286
                  **********998765.45556677888888888888877766666677788888888888887765 PP

>> Kdo  Lipopolysaccharide kinase (Kdo/WaaP) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.1   0.0   5.3e-07    0.0014     116     166 ..     120     168 ..     101     174 .. 0.83

  Alignments for each domain:
  == domain 1  score: 18.1 bits;  conditional E-value: 5.3e-07
         Kdo 116 aeelkrallkavgrliaklhragvnHadlyaknillqqeeeeeaeiwliDl 166
                 +e+     + ++++++a + ++g+ H+dl   ni+l++++     + +iD+
  KOO22314.1 120 SERAAWPFVSRLAKAVAHMFSRGLVHRDLKLENIMLHAAD--PNAVKVIDF 168
                 55555556789999************************97..889999999 PP

>> Pkinase_fungal  Fungal protein kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.0   8.6e-06     0.022     321     385 ..     137     201 ..     130     210 .. 0.76

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 8.6e-06
  Pkinase_fungal 321 sLflkagiLHrDiSenNilitdskkegerkglLiDLDlakelsddssesga......rertGTleFmaiev 385
                      +f   g++HrD   +Ni++      + +   +iD+ la+el+  +    +       +  GT+++ a ev
      KOO22314.1 137 HMF-SRGLVHRDLKLENIMLH---AADPNAVKVIDFGLAMELEIGEDG--HlieravADAAGTAAYRAPEV 201
                     566.889**************...55677889**********964433..223344578888888877666 PP

>> RIO1  RIO1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   9.2e-05      0.23     104     166 ..     121     185 ..     100     191 .. 0.75

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 9.2e-05
                 HHHHHHHHHHHHHHHHHHHHTSTEEESS-STTSEEEETT...EEEE--GTTEEETTSTTHHHHHHH CS
        RIO1 104 eeeaeelyeevleemrklykeaglvHaDLSeyNvlvded...kvviIDvsQaveldhpnalefLer 166
                 e+ a   +  + ++++ ++   glvH DL   N++++      v +ID++ a+el+  +  +++er
  KOO22314.1 121 ERAAWPFVSRLAKAVAHMF-SRGLVHRDLKLENIMLHAAdpnAVKVIDFGLAMELEIGEDGHLIER 185
                 4455556666777777888.99*************9975343788*****9999886666666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (358 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       269  (0.0150036); expected 358.6 (0.02)
Passed bias filter:                      264  (0.0147247); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.50u 0.25s 00:00:00.75 Elapsed: 00:00:00.42
# Mc/sec: 2536.70
//
Query:       KOO22315.1  [L=117]
Description: hypothetical protein Ctob_001362 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.4e-18   65.6   0.4    3.1e-18   65.2   0.4    1.1  1  LSM        LSM domain
     0.0059   16.5   0.1      0.009   15.9   0.1    1.2  1  Tail_tube  Phage tail tube protein
  ------ inclusion threshold ------
      0.011   15.8   0.3      0.015   15.4   0.3    1.2  1  SM-ATX     Ataxin 2 SM domain
      0.018   14.9   0.5       0.03   14.2   0.2    1.5  2  BPL_C      Biotin protein ligase C terminal domain
       0.16   11.8   0.1       0.23   11.4   0.1    1.3  1  Gemin7     Gem-associated protein 7 (Gemin7)


Domain annotation for each model (and alignments):
>> LSM  LSM domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.2   0.4   8.5e-22   3.1e-18       1      66 [.       5      69 ..       5      70 .. 0.97

  Alignments for each domain:
  == domain 1  score: 65.2 bits;  conditional E-value: 8.5e-22
                HHHHHTTTSEEEEEETTSEEEEEEEEEEETTSEEEEEEEEEEETTETEEEEEEEEEEEGGGEEEEE CS
         LSM  1 kflkklinkkvtvelkngrelrGtLkgfDqfmNlvLedveetlkdkkekrklglvliRGnnivlis 66
                +fl kl n++vtvelkng+++ Gt+ g+D  mN +L++v++tlk+k e   l+++ iRG+n+++ +
  KOO22315.1  5 RFLMKLSNETVTVELKNGTVVTGTVAGVDVSMNTHLKQVKMTLKGK-EPLALDTLSIRGSNVRYFI 69
                59********************************************.****************987 PP

>> Tail_tube  Phage tail tube protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.1   2.5e-06     0.009      68     113 ..       7      50 ..       4      52 .. 0.82

  Alignments for each domain:
  == domain 1  score: 15.9 bits;  conditional E-value: 2.5e-06
   Tail_tube  68 lkaltnatvtfeldnGktyvlsgAwlvdepelkskdGtielkfegk 113
                 l++l+n tvt+el+nG +++ + A ++    +++   +++++++gk
  KOO22315.1   7 LMKLSNETVTVELKNGTVVTGTVAGVDVS--MNTHLKQVKMTLKGK 50 
                 7899********************99876..555555888888876 PP

>> SM-ATX  Ataxin 2 SM domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.4   0.3   4.1e-06     0.015       5      51 ..       4      48 ..       1      67 [. 0.82

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 4.1e-06
                HHHHHTTTTSEEEEEETTS-EEEEEEEEE-T..T--EEEEEEEETTS CS
      SM-ATX  5 lflltslvGkevevtvknGevyeGifstvslekdfsvvLkmarkvkk 51
                + +l++l  ++v+v++knG v +G   +v++   ++  Lk ++ + k
  KOO22315.1  4 VRFLMKLSNETVTVELKNGTVVTGTVAGVDV--SMNTHLKQVKMTLK 48
                56667777789********************..9********99988 PP

>> BPL_C  Biotin protein ligase C terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   0.2   8.4e-06      0.03       2      23 ..      11      33 ..      10      35 .. 0.92
   2 ?   -2.9   0.0       1.8   6.5e+03       4      13 ..      41      50 ..      41      51 .. 0.75

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 8.4e-06
                TTSEEEEEETSCEE.EEEEEEE- CS
       BPL_C  2 sGqeVtlededgkv.eGiavGId 23
                s+++Vt+e+++g+v +G++ G+d
  KOO22315.1 11 SNETVTVELKNGTVvTGTVAGVD 33
                8********888888******98 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 1.8
                SEEEEEETSC CS
       BPL_C  4 qeVtlededg 13
                ++V+++++++
  KOO22315.1 41 KQVKMTLKGK 50
                6899999654 PP

>> Gemin7  Gem-associated protein 7 (Gemin7)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.1   6.4e-05      0.23      12      47 ..       2      37 ..       1      50 [. 0.91

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 6.4e-05
      Gemin7 12 rfLrslkalvgkpveftllektevsaefkgvdidee 47
                +  r+l +l+++ v+++l + t v+++ +gvd++++
  KOO22315.1  2 KLVRFLMKLSNETVTVELKNGTVVTGTVAGVDVSMN 37
                6689****************************9875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (117 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       496  (0.0276647); expected 358.6 (0.02)
Passed bias filter:                      413  (0.0230353); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.38u 0.24s 00:00:00.62 Elapsed: 00:00:00.39
# Mc/sec: 908.12
//
Query:       KOO22316.1  [L=784]
Description: glucosylceramidase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.6e-76  256.0   0.2    7.4e-76  255.4   0.2    1.3  1  Glyco_hydro_30   Glycosyl hydrolase family 30 TIM-barrel doma
    1.7e-07   31.6   0.0    3.4e-07   30.6   0.0    1.5  1  Ricin_B_lectin   Ricin-type beta-trefoil lectin domain
    9.7e-06   25.7   0.2    2.5e-05   24.4   0.2    1.7  1  Glyco_hydro_30C  Glycosyl hydrolase family 30 beta sandwich d
    1.1e-05   24.9   0.1    1.7e-05   24.2   0.1    1.2  1  Glyco_hydro_59   Glycosyl hydrolase family 59
    7.3e-05   23.4   0.1      0.049   14.4   0.1    3.0  2  RicinB_lectin_2  Ricin-type beta-trefoil lectin domain-like
  ------ inclusion threshold ------
       0.91    9.6   4.8        1.8    8.6   4.8    1.4  1  Herpes_capsid    Gammaherpesvirus capsid protein
        5.1    7.8  15.8         13    6.5  15.8    1.7  1  Ribosomal_60s    60s Acidic ribosomal protein


Domain annotation for each model (and alignments):
>> Glyco_hydro_30  Glycosyl hydrolase family 30 TIM-barrel domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  255.4   0.2   2.9e-79   7.4e-76       1     348 []      27     399 ..      27     399 .. 0.83

  Alignments for each domain:
  == domain 1  score: 255.4 bits;  conditional E-value: 2.9e-79
                     --EEEEE--HHHHHHHHTS-HHHHHHHHHHHHS...TTTT---EEEEEES--SSSSS---ST-STT-TT-TT----.HHHHTT.HHHHHHHHHHH CS
  Glyco_hydro_30   1 ikGfGstlsdasganlkslsdkladlllkqyfs...deGlnlqigrvpiastdfssrvytyddtaddyslanfslt.kedtkl.kipyikraqky 90 
                     i GfG+++++a+++n k ls++ ++ ++  yf    + G ++ +grvpi s+dfs   y++dd+a d +l++f+ + + d++   ip+i  aq+ 
      KOO22316.1  27 IIGFGGAFTEAAALNWKLLSEDDQKKVISLYFDppeKGGHGYTLGRVPINSCDFSPESYSFDDVAGDVELEHFDTSvRHDVESgMIPMILAAQEK 121
                     569*****************************64435689*********************************7643667664279***999964 PP

                     ....-SS-EEEEEES---GGGBTTSSSS.S...S-BB.SS-TT..SHHHH.HHHHHHHHHHHHHHHTT--ESEEESSSSGGGGGSTT-SSS--B- CS
  Glyco_hydro_30  91 ....nqdlkllaapwaapgwlkttkavk.G...kGal.kGkag..diyhk.ayakyfvkfleeyaksklsfwglsteneptaGsdkktklqslgf 173
                          ++l+++a+pw+ p+w+k   a + G   + +l   k++  d  h+  +akyf kf+ +y  +++ +wg++ +nep a +      +++++
      KOO22316.1 122 vvarGEKLNVYASPWSPPAWMKLPAANQsGvvvQSMLvSAKPNglDPQHQrPWAKYFSKFISAYRSHGIDLWGVTVQNEPEAAV----GWEAMLW 212
                     22213569**************765433121113333123332237777636****************************9875....56799** PP

                     -HHHHHHHHHHTHHHHHHTSTT.TTSEEEEEEEEGGGTTHHHHHHHTSHHHHTTEEEEEEEETTTS-HHHHHHHHHHHSTTSEEEEEEEESS-ST CS
  Glyco_hydro_30 174 taetqrdfikrdlGpalaassagknvkllilddnrgnlpkwadvvlndkdaakyvsGiavhayqdaeadkhldethkkfpnvlllgteaseGsks 268
                     t+e+   f++  lGp laa +   nvk+l +d n+  +  wa+++ +d++aak+ +G++vh+y   ++ + ld th++ pn ++lgtea++  + 
      KOO22316.1 213 TPEYMASFVRDHLGPVLAAEQP--NVKILGFDHNKDHVADWAKALYEDPEAAKFFAGMGVHWYGGLNT-HALDYTHHLQPNKMILGTEACNCGGV 304
                     ******************9988..***************************************97766.57******************986555 PP

                     TS-SS-T..T-.........HHHHHHHHHHHHHHHHTTEEEEEEEESEB-TTS---TT---B--SEEEEG....GGTEEEE-HHHHHHHHHHTTS CS
  Glyco_hydro_30 269 kdqsvdy..Gs.........fdraadyasdildnlnnwvvGwternlvldaeGGpswvsdfvdapviafi....alaqfykqpmfyalahfskfi 348
                       +++ y  G+         + ra+  a dil++l +w vGwt++nlvl  +GGp+ +++ +da +i+++    ++ ++  q  +y ++hfs+++
      KOO22316.1 305 TYRNISYkdGAiisspiaawWSRAESLALDILEDLRFWAVGWTDWNLVLSIKGGPNHLKNLCDANIIVDPinnlSQGTLIMQASYYYMGHFSRYV 399
                     444444422323444555559***********************************************983222356899************986 PP

>> Ricin_B_lectin  Ricin-type beta-trefoil lectin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.6   0.0   1.3e-10   3.4e-07      21     109 ..     425     525 ..     418     553 .. 0.87

  Alignments for each domain:
  == domain 1  score: 30.6 bits;  conditional E-value: 1.3e-10
                     TSTEBEEEEE-TSCCGGGEEEEETTSEEEETT............TTEEEEES.SSSTTSBEEEEETTTTSGGGCEE.EET.TTTEEEETTTSEEE CS
  Ricin_B_lectin  21 kagapvglydChgskgkQlwtltkdgeirska...........qselCldvs.staegakvvlakChkgkgnqrWe.fdk.dgtqirhkksgkCL 101
                     k+g+++  ++C+g +  Q+wtl++ g++ ++            +++ C+dv  +++ ++k + + C  + gnq W+ +d   g+qi+++  +kC+
      KOO22316.1 425 KNGQALLFAPCDGDDV-QKWTLDDGGSLFVHGtaeallsegykHGGECVDVAlDSPIDGKTQTWACF-HVGNQIWSvVDVpGGSQIKNPYLNKCM 517
                     3389999*******77.******999999988899999999999**********************9.9*******766425677********** PP

                     EESTTSST CS
  Ricin_B_lectin 102 dvkgasks 109
                     ++ + +++
      KOO22316.1 518 TAVQTNGA 525
                     **998875 PP

>> Glyco_hydro_30C  Glycosyl hydrolase family 30 beta sandwich domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.4   0.2   9.9e-09   2.5e-05      17      65 .]     593     642 ..     588     642 .. 0.86

  Alignments for each domain:
  == domain 1  score: 24.4 bits;  conditional E-value: 9.9e-09
  Glyco_hydro_30C  17 vetvAFlnpDGsivvvilNrsessvtitvsdssk.skgslsvparSivTv 65 
                      + +vAF  p G + ++ +N ++s+v++t+ d+++ +++s ++ +++i+T+
       KOO22316.1 593 FNAVAFEQPSGEVSLITMNLGDSDVNFTIVDQNAqTGVSHTIGSHAIHTY 642
                      789**************************9987634455556*******7 PP

>> Glyco_hydro_59  Glycosyl hydrolase family 59
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.2   0.1   6.7e-09   1.7e-05      82     220 ..     121     298 ..     101     338 .. 0.74

  Alignments for each domain:
  == domain 1  score: 24.2 bits;  conditional E-value: 6.7e-09
  Glyco_hydro_59  82 eAkkrnpdikldileWgaPgwlk.....................ksaekasektaeylkswlkgakktygldidyiag.............lrne 142
                      + +r  ++++++ +W+ P+w+k                     + + + ++  a+y++++++ a++++g+d+  ++              l++ 
      KOO22316.1 121 KVVARGEKLNVYASPWSPPAWMKlpaanqsgvvvqsmlvsakpnGLDPQHQRPWAKYFSKFIS-AYRSHGIDLWGVTVqnepeaavgweamLWTP 214
                     45689999*******************************9887644456666789*******5.5699******994455555555444444443 PP

  Glyco_hydro_59 143 keydkdy.vktlrkaLdkngykkvklvaadeaat..wsiakelakdselkdavdvvglHytt....eksssn.....aealgkplwasEd 220
                      ey +++  ++l ++L++ +  +vk+ + d++++   + ak+l +d+e ++  + +g+H+      +          + + +k +  +E+
      KOO22316.1 215 -EYMASFvRDHLGPVLAA-EQPNVKILGFDHNKDhvADWAKALYEDPEAAKFFAGMGVHWYGglntH----AldythHLQPNKMILGTEA 298
                     .45666635667777765.5689*******5555579**********************87744321....1122334455555666666 PP

>> RicinB_lectin_2  Ricin-type beta-trefoil lectin domain-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.3   0.0     0.013        33      33      58 ..     424     449 ..     403     456 .. 0.79
   2 !   14.4   0.1   1.9e-05     0.049      21      87 ..     467     528 ..     465     530 .. 0.89

  Alignments for each domain:
  == domain 1  score: 5.3 bits;  conditional E-value: 0.013
                      BCTTEEEEEE-TTT-GGCEEEEECCE CS
  RicinB_lectin_2  33 tanganvqqwtcsgaanqqWrledtg 58 
                       +ng+++   +c+g++ q+W+l+d g
       KOO22316.1 424 VKNGQALLFAPCDGDDVQKWTLDDGG 449
                      3478899999***********96544 PP

  == domain 2  score: 14.4 bits;  conditional E-value: 1.9e-05
                      SSSEEEECGCCTBCTTEEEEEE-TTT-GGCEEEEECCESSEEEEEETTTTEEEEECGCS-STTEEEE CS
  RicinB_lectin_2  21 asgkvLdvaggstanganvqqwtcsgaanqqWrledtgdgtyrivnkasgkvLdvaggstanGtnvq 87 
                      + g ++dva +s+ +  ++q+w+c    nq W ++d + g  +i+n   +k+++     ++nG++v+
       KOO22316.1 467 HGGECVDVALDSPID-GKTQTWACFHVGNQIWSVVDVP-GGSQIKNPYLNKCMTAV---QTNGAAVG 528
                      789**********95.88999999999***********.889***********988...58888886 PP

>> Herpes_capsid  Gammaherpesvirus capsid protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.6   4.8   0.00071       1.8      79     138 ..     699     758 ..     690     765 .. 0.78

  Alignments for each domain:
  == domain 1  score: 8.6 bits;  conditional E-value: 0.00071
  Herpes_capsid  79 dekPslradrgaglsafealsltvPPetaegttgGgsdssasGasGgsastlsSgpsssa 138
                    d +P + a+ +a++ a  a++  vPP++a  t+   s++  +  + g+++t++   ++ a
     KOO22316.1 699 DAQPAAAAAAAAAAAAAAAAAALVPPQPAGETGTTLSSAVLLMMAAGAIATMAVVRHGAA 758
                    67899***********************96555444444667778888888887777655 PP

>> Ribosomal_60s  60s Acidic ribosomal protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.5  15.8    0.0051        13      22      66 ..     678     720 ..     660     727 .. 0.70

  Alignments for each domain:
  == domain 1  score: 6.5 bits;  conditional E-value: 0.0051
                    XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
  Ribosomal_60s  22 rvkllvkalegkdieellangaaklaaaaaaaaaaaaaaaaaaaa 66 
                    +v   v+  + ++ie + a+g a+  +aaaaaaaaaaaaaaaaaa
     KOO22316.1 678 AVVEQVAVPALVTIEAVRAAGDAQ--PAAAAAAAAAAAAAAAAAA 720
                    555566677778899999999988..6666666666666555554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (784 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       759  (0.0423336); expected 358.6 (0.02)
Passed bias filter:                      408  (0.0227564); expected 358.6 (0.02)
Passed Vit filter:                        56  (0.00312343); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.69u 0.29s 00:00:00.98 Elapsed: 00:00:00.45
# Mc/sec: 5224.13
//
Query:       KOO22317.1  [L=1163]
Description: DNA helicase ii rep [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.4e-53  182.5   0.0    3.7e-53  181.1   0.0    1.7  2  UvrD-helicase  UvrD/REP helicase N-terminal domain
    3.6e-27   95.7   0.0    3.3e-18   66.2   0.0    2.2  2  UvrD_C         UvrD-like helicase C-terminal domain
    1.6e-21   77.2   0.2    4.5e-21   75.7   0.0    1.9  2  AAA_19         AAA domain
    2.3e-10   40.1   0.1    1.1e-09   37.9   0.1    2.2  1  UvrD_C_2       UvrD-like helicase C-terminal domain
    0.00076   19.3   0.1     0.0037   17.0   0.1    2.2  1  AAA_30         AAA domain
  ------ inclusion threshold ------
      0.016   15.5   0.1        4.3    7.6   0.0    2.9  2  AAA_22         AAA domain
       0.17   11.7   0.0       0.49   10.1   0.0    1.7  2  AAA_11         AAA domain


Domain annotation for each model (and alignments):
>> UvrD-helicase  UvrD/REP helicase N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  181.1   0.0   1.5e-56   3.7e-53       5     313 ..      19     320 ..      16     322 .. 0.90
   2 ?   -5.1   1.3       6.7   1.7e+04      58      91 ..    1071    1109 ..    1064    1113 .. 0.64

  Alignments for each domain:
  == domain 1  score: 181.1 bits;  conditional E-value: 1.5e-56
                    HHHHHHS-SSEEEEEE-TTSSHHHHHHHHHHHHHHTSSSTGGGEEEEESSHHHHHHHHHHHHHHHHHCCHHCTT-HHHHHHHHHCTTSEEEEHHHH CS
  UvrD-helicase   5 qreaiaslggpilveAsAGsGKTfvlaerilrlikeeeiepdrilvvTFTnkAaeElkeRieealkkaeqessdderlrlalqnlseanisTlHsf 100
                    q eai+s+++ +l +As+G+GKT+v+ +r ++l+ ++ + +++ilvvTFT+ Aae lk+R++ + + +                l+ ++ +T+Hs+
     KOO22317.1  19 QAEAIRSSSNAVLMIASPGTGKTRVIRARLAYLMGKG-VPASSILVVTFTQHAAEMLKTRVQVL-GTS----------------LEGVHLGTFHSV 96 
                    899**********************************.***********************985.554................89********** PP

                    HHHHHHHHHGGTTSHTTTEEECHHHHHHCCHHHHHHHHHSCHSHTTTTHHHHHHHHHHHHHHCCCCCHHHHCCCHHHHHCHHHHHHHHHHHTTCCT CS
  UvrD-helicase 101 cqkilkkeanrigldpnfrildeedeedlkqqellkelleksaddslnldkkkleklikelsksrnikkeelslskskaeelrelvskakekqlsp 196
                    c k+l+++a  +gl p fr+l e++     q+ell +l+ +     + ++ ++  ++    s      +   s s+  a  +   ++ +ke+ l+p
     KOO22317.1  97 CAKMLREHAALLGLSPSFRVLMETE-----QLELLSALMRQ-----VGMAPRDGGQRRGGASD----ASSSGSTSQVTAAAILRRIQCWKERGLRP 178
                    *************************.....78888887763.....33333333333221111....23567889999999*************** PP

                    THHCHSS......TSCSHHHHHHHHHHHHHHHHHHHHTCEEHHHHHHHHHHHHHHCHHHHHHHHHHSSEEEESSGGG-BHHHHHHHHHHHTTTTT. CS
  UvrD-helicase 197 kelkkaf......ekasdlqkkiaeflkeyqeqkkeenalDfsdllhallelleeneelaealrerykeiliDEyQDTnkiQyrilkllasghee. 285
                     +            +     +++++++  yq+ + e+ +lD+ dl +a+l+l+e+++++++a+r+r++++l+DE QDT+ +Qy++l++la +  + 
     KOO22317.1 179 DDVHTVAeadvagGAPAAMVHAARNLYPLYQRGLHERGTLDYTDLTLATLRLFESHPHVLRAYRRRFRHLLVDELQDTSAVQYEWLRKLAGAAGQa 274
                    **998778999987888888999*******************************************************************999889 PP

                    ..................EEEEE-GGG--GGGGTB-THHHHHHHHH CS
  UvrD-helicase 286 ..................lfmvGDpkQsIYgFRgAdielflkkkkd 313
                                      +f  +D++QsIYg+RgA  ++ l++ +d
     KOO22317.1 275 psadresfeddgpavassIFAAADDDQSIYGWRGASRDNVLRFPHD 320
                    99*************************************9999776 PP

  == domain 2  score: -5.1 bits;  conditional E-value: 6.7
                     HHHHHHHHHHHHHHCCHHCTT-H.....HHHHHHHHCTT CS
  UvrD-helicase   58 aeElkeRieealkkaeqessdde.....rlrlalqnlse 91  
                     aeEl +R ++a + + + s+ +      rl   l+ l++
     KOO22317.1 1071 AEELTARMRAASQREDYASALQLqtqrdRLLSRLSLLER 1109
                     788888888865555555544444444477766666665 PP

>> UvrD_C  UvrD-like helicase C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.2   0.0   9.1e-10   2.3e-06       2     151 ..     328     480 ..     327     495 .. 0.81
   2 !   66.2   0.0   1.3e-21   3.3e-18     285     340 ..     628     685 ..     617     692 .. 0.92

  Alignments for each domain:
  == domain 1  score: 27.2 bits;  conditional E-value: 9.1e-10
                 xxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
      UvrD_C   2 vLekNyRStksLlkaankflenilnr.ralekekktvekgekivvleaeteeeEaekiaatikallekneklediavLvRsnkdadkiskaLkkegipf 99 
                 ++ + yR ++ +l  a  +l+++ +  + +     +  +  ++ ++ + ++ +E  +ia++i+a +   + l++iavLvRs+++a+++  +L + gip+
  KOO22317.1 328 RMAQSYRCSPHVLASALPLLQHADSLvPKSPFTRLPPANAARVLLRGFWDSTQEGAWIASQIRARVLGGQSLASIAVLVRSQEQAKSLLPHLVAAGIPV 426
                 566779999999999999997777772222244466677779**********************9999******************************9 PP

                 xxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
      UvrD_C 100 nvvd...eekfFkreeikdilaylkllankqdkialkrilkrlvlgigkatveri 151
                  +         ++  e++ +   l+l+++  d++a +  l +   g+++a+++++
  KOO22317.1 427 AMQPlgaVDAWWNAHEVRCAVNALRLVRSTADDAAARE-LLGAWAGLSRAAIDTL 480
                 98543256778999****************99998877.5577778888877777 PP

  == domain 2  score: 66.2 bits;  conditional E-value: 1.3e-21
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxx RF
      UvrD_C 285 ekipiiTiHqAKGlEFdvVflagleegtfPsyrskk..ekrleEEkRlfYVaiTRAkk 340
                   i ++TiH+AKGlE+d+Vfl g e+gtfP   s++  ++  +EE Rl YVa+TRAk 
  KOO22317.1 628 GAISLLTIHKAKGLEWDTVFLPGWEQGTFPLAPSTRlgSQGHDEEWRLAYVALTRAKH 685
                 6799**************************999999998899**************96 PP

>> AAA_19  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   75.7   0.0   1.7e-24   4.5e-21       1     144 [.      19     305 ..      19     307 .. 0.93
   2 ?   -3.4   0.1       4.4   1.1e+04      31      55 ..     477     499 ..     452     505 .. 0.60

  Alignments for each domain:
  == domain 1  score: 75.7 bits;  conditional E-value: 1.7e-24
      AAA_19   1 qreavealkekvllvtaGpGtGKTrvlkhivallvelggvkpeeillvaftgrAakelrerlaalgae.....atTiHrlal................. 77 
                 q ea+  ++++ +l++a pGtGKTrv+++++a+l   g v++ +il+v+ft++Aa+ l++r+++lg +       T+H++                   
  KOO22317.1  19 QAEAI-RSSSNAVLMIASPGTGKTRVIRARLAYLMGKG-VPASSILVVTFTQHAAEMLKTRVQVLGTSlegvhLGTFHSVCAkmlrehaallglspsfr 115
                 78999.99999**********************99888.999********************999999888888888888669**************** PP

      AAA_19  78 ................................................................................................... 77 
                                                                                                                    
  KOO22317.1 116 vlmeteqlellsalmrqvgmaprdggqrrggasdasssgstsqvtaaailrriqcwkerglrpddvhtvaeadvaggapaamvhaarnlyplyqrglhe 214
                 *************************************************************************************************** PP

      AAA_19  78 ...ldfddlltealelle..eaeeekklqeee.llivDEfqdvdelqyrLlkallgekkk...................lllvGDpdQliyv 144
                    ld++dl+  +l l+e    +  +  ++++ +l+vDE qd++ +qy+ l++l+g + +                   +++  D+dQ+iy 
  KOO22317.1 215 rgtLDYTDLTLATLRLFEshP-HVLRAYRRRFrHLLVDELQDTSAVQYEWLRKLAGAAGQapsadresfeddgpavassIFAAADDDQSIYG 305
                 ***999999977777777641.33345567888**********************9995569999999*********999999*****9996 PP

  == domain 2  score: -3.4 bits;  conditional E-value: 4.4
      AAA_19  31 vallvelggvkpeeillvaftgrAa 55 
                 +  l+el +   +e  l++ t rA 
  KOO22317.1 477 IDTLQELAQK--QERSLLTTTARAL 499
                 3333333332..3444455555554 PP

>> UvrD_C_2  UvrD-like helicase C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.9   0.1   4.3e-13   1.1e-09       4      48 ..     632     686 ..     629     690 .. 0.84

  Alignments for each domain:
  == domain 1  score: 37.9 bits;  conditional E-value: 4.3e-13
    UvrD_C_2   4 altihkaQGsefpaVivfdpdlaaarmgel.............rrrlLYtavTRArek 48 
                  ltihka+G+e+++V++  p + +   + l               rl+Y+a+TRA++ 
  KOO22317.1 632 LLTIHKAKGLEWDTVFL--PGWEQGTFP-LapstrlgsqghdeEWRLAYVALTRAKHF 686
                 68***************..766666533.457789999******************95 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.0   0.1   1.5e-06    0.0037      11      70 ..      21      82 ..      17     127 .. 0.78

  Alignments for each domain:
  == domain 1  score: 17.0 bits;  conditional E-value: 1.5e-06
      AAA_30 11 ealltsgdrvavltGpAGtGKttalkalreaweaag...grviglAptgkaAkvLaeelgiea 70
                ea+ +s++  +++ + +GtGKt +++a  + +  +g    ++++++ t+ aA+ L++ +++ +
  KOO22317.1 21 EAIRSSSN-AVLMIASPGTGKTRVIRARLAYLMGKGvpaSSILVVTFTQHAAEMLKTRVQVLG 82
                34455555.89999*************98888888888999***************8666533 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.6   0.0     0.014        37       5      24 ..      27      46 ..      23     132 .. 0.85
   2 ?    7.6   0.0    0.0017       4.3      78     116 ..     233     268 ..     164     279 .. 0.76

  Alignments for each domain:
  == domain 1  score: 4.6 bits;  conditional E-value: 0.014
      AAA_22  5 agilvvtGesGtGKTtllrr 24
                 + ++ ++ +GtGKT+++r 
  KOO22317.1 27 SNAVLMIASPGTGKTRVIRA 46
                566788999********996 PP

  == domain 2  score: 7.6 bits;  conditional E-value: 0.0017
      AAA_22  78 llealeqalraravielliiDEaqhlrseealeeLrsll 116
                    ++ +a r+r++   l++DE q   s+ ++e+Lr+l+
  KOO22317.1 233 SHPHVLRAYRRRFR--HLLVDELQDT-SAVQYEWLRKLA 268
                 34456666666666..**********.*********997 PP

>> AAA_11  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.0   0.00019      0.49       9      61 ..      22      65 ..      15      91 .. 0.67
   2 ?   -3.7   0.0       3.2   8.3e+03     196     225 ..     221     252 ..     214     252 .. 0.72

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.00019
      AAA_11  9 aiksalseseitliqGPPGtgKTktivellsqllsrrkseeeksakpriLvCa 61
                ai+   s+s+ +l+   PGtgKT++i + l++l+       ++ +   iLv +
  KOO22317.1 22 AIR---SSSNAVLMIASPGTGKTRVIRARLAYLM------GKGVPASSILVVT 65
                333...344457888888************9993......3445555555444 PP

  == domain 2  score: -3.7 bits;  conditional E-value: 3.2
      AAA_11 196 aeivltTlsga..gsklleklakkfdvviIDE 225
                 +++ l+Tl       ++l++++++f+ +++DE
  KOO22317.1 221 TDLTLATLRLFesHPHVLRAYRRRFRHLLVDE 252
                 56666776654115578999999********9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1163 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       586  (0.0326845); expected 358.6 (0.02)
Passed bias filter:                      369  (0.0205812); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.78u 0.32s 00:00:01.10 Elapsed: 00:00:00.48
# Mc/sec: 7315.17
//
Query:       KOO22318.1  [L=660]
Description: ddt domain-containing protein, partial [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    9.8e-09   35.4   0.5    1.7e-08   34.6   0.5    1.4  1  DDT        DDT domain
    7.1e-06   26.3   3.2    1.5e-05   25.3   1.6    2.1  2  HMG_box    HMG (high mobility group) box
     0.0002   21.9   3.4     0.0005   20.6   1.1    2.4  2  HMG_box_2  HMG-box domain


Domain annotation for each model (and alignments):
>> DDT  DDT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.6   0.5   2.8e-12   1.7e-08       2      58 ..     483     536 ..     482     538 .. 0.94

  Alignments for each domain:
  == domain 1  score: 34.6 bits;  conditional E-value: 2.8e-12
         DDT   2 dfgdlLmvweFLhvFgelLgLspftlddlesALlsqdpmgpseLlaeihiaLLkall 58 
                 ++g+lL  ++F  ++ ++LgL+ f+l++l  ALl+  p   s Ll+e+  aLL+ +l
  KOO22318.1 483 CVGSLLAAFDFVSTYADPLGLTRFSLEELRLALLHRGP---SVLLSEMALALLRFCL 536
                 9*********************************8887...899*********9765 PP

>> HMG_box  HMG (high mobility group) box
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.0      0.41   2.5e+03       3      18 ..     281     296 ..     280     300 .. 0.84
   2 !   25.3   1.6   2.5e-09   1.5e-05      29      65 ..     337     373 ..     333     375 .. 0.92

  Alignments for each domain:
  == domain 1  score: -1.0 bits;  conditional E-value: 0.41
                 SS--HHHHHHHHHHHH CS
     HMG_box   3 Rplsafflfskeqrak 18 
                 ++ +++ +f++e+r+ 
  KOO22318.1 281 KARTSYQIFAEEERPA 296
                 68899*******9986 PP

  == domain 2  score: 25.3 bits;  conditional E-value: 2.5e-09
                 HHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHH CS
     HMG_box  29 aeiskklgekWkalseeeKkkYeekaekekaryekek 65 
                 a+++++lg++Wkal  e+K+++ee+a+kek+   ke 
  KOO22318.1 337 AAVVVELGKRWKALALEQKEPFEERARKEKEAVLKEA 373
                 68999**************************998886 PP

>> HMG_box_2  HMG-box domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.4   0.0      0.17     1e+03       7      25 ..     282     300 ..     278     313 .. 0.79
   2 !   20.6   1.1   8.3e-08    0.0005      35      70 ..     339     374 ..     333     376 .. 0.90

  Alignments for each domain:
  == domain 1  score: 0.4 bits;  conditional E-value: 0.17
                 S--HHHHHHHTTHHHHHHH CS
   HMG_box_2   7 arnAYalfvqemipelkrk 25 
                 ar +Y +f+ e++p + + 
  KOO22318.1 282 ARTSYQIFAEEERPAASAA 300
                 6899********9987665 PP

  == domain 2  score: 20.6 bits;  conditional E-value: 8.3e-08
                 HTGGGHHHHHHS-HHHHHHHHHHHHHHHHHHHH-SS CS
   HMG_box_2  35 vsklcsekWkalseeeKekYeekAkedkkrydreal 70 
                 v+ +++++Wkal  e+Ke++ee+A++ k++  +ea+
  KOO22318.1 339 VVVELGKRWKALALEQKEPFEERARKEKEAVLKEAQ 374
                 5667899**********************9999875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (660 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       776  (0.0432818); expected 358.6 (0.02)
Passed bias filter:                      367  (0.0204696); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.62u 0.25s 00:00:00.87 Elapsed: 00:00:00.42
# Mc/sec: 4664.21
//
Query:       KOO22319.1  [L=169]
Description: hypothetical protein Ctob_001366 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    7.4e-26   87.7   2.3    1.7e-08   33.4   0.0    4.6  4  EF-hand_1        EF hand
    5.4e-22   78.0   1.8    5.9e-12   45.9   0.3    2.2  2  EF-hand_7        EF-hand domain pair
    8.8e-19   65.8   1.8    1.2e-06   27.9   0.0    5.1  5  EF-hand_6        EF-hand domain
    8.1e-16   56.7   0.2    0.00016   21.0   0.0    5.1  5  EF-hand_5        EF hand
    8.4e-15   54.4   8.1    1.9e-05   24.4   0.3    4.2  4  EF-hand_8        EF-hand domain pair
    1.8e-07   31.4   0.0      0.026   14.9   0.0    2.2  2  EF-hand_9        EF-hand domain
    1.3e-05   25.1   1.6       0.19   11.7   0.3    3.2  2  EF-hand_4        Cytoskeletal-regulatory complex EF hand
     0.0067   16.4   0.0        1.5    8.7   0.0    2.8  3  Caleosin         Caleosin related protein
     0.0083   17.0   0.0      0.014   16.2   0.0    1.4  1  EF-hand_11       EF-hand domain
  ------ inclusion threshold ------
      0.061   13.5   0.2       0.49   10.6   0.2    2.2  2  Dockerin_1       Dockerin type I domain
      0.081   13.1   0.9        0.3   11.3   0.1    2.1  2  DUF3008          Protein of unknwon function (DUF3008)
      0.088   13.2   0.2         16    6.0   0.1    2.3  2  EF-hand_14       EF-hand domain
      0.088   12.6   0.0       0.13   12.1   0.0    1.2  1  Glyco_hyd_65N_2  Glycosyl hydrolase family 65, N-terminal dom


Domain annotation for each model (and alignments):
>> EF-hand_1  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.4   0.0   1.2e-11   1.7e-08       1      29 []      16      44 ..      16      44 .. 0.96
   2 !   27.1   0.1   1.2e-09   1.7e-06       1      27 [.      52      78 ..      52      80 .. 0.96
   3 !   20.7   0.0   1.4e-07   0.00019       1      28 [.      89     116 ..      89     117 .. 0.88
   4 ?    3.2   0.0     0.057        79      17      28 ..     143     154 ..     142     155 .. 0.91

  Alignments for each domain:
  == domain 1  score: 33.4 bits;  conditional E-value: 1.2e-11
                HHHHHHHHHTTTSSSEEEHHHHHHHHHHH CS
   EF-hand_1  1 elkeiFrefDkDgdGkIdfeEfkellkkl 29
                e+ke+F++fD+D +G I+++E+++++k+l
  KOO22319.1 16 EVKEAFNLFDVDSSGAISYKELRACMKAL 44
                79************************985 PP

  == domain 2  score: 27.1 bits;  conditional E-value: 1.2e-09
                HHHHHHHHHTTTSSSEEEHHHHHHHHH CS
   EF-hand_1  1 elkeiFrefDkDgdGkIdfeEfkellk 27
                elk+++ e+D D++G I+f Ef+++++
  KOO22319.1 52 ELKKMILEVDADQSGEIEFPEFLTMMT 78
                79************************7 PP

  == domain 3  score: 20.7 bits;  conditional E-value: 1.4e-07
                 HHHHHHHHHTTTSSSEEEHHHHHHHHHH CS
   EF-hand_1   1 elkeiFrefDkDgdGkIdfeEfkellkk 28 
                 e+ ++ ++fD+DgdG I+f  +k++ ++
  KOO22319.1  89 EILKVYKMFDVDGDGAITFASLKRVARE 116
                 678999*************999988765 PP

  == domain 4  score: 3.2 bits;  conditional E-value: 0.057
                 EEHHHHHHHHHH CS
   EF-hand_1  17 IdfeEfkellkk 28 
                 ++f++f +l+kk
  KOO22319.1 143 VSFDDFYRLMKK 154
                 79********98 PP

>> EF-hand_7  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.9   0.3   4.3e-15   5.9e-12       2      70 ..      15      77 ..      14      78 .. 0.94
   2 !   31.8   0.1     1e-10   1.4e-07       3      71 .]      89     153 ..      87     153 .. 0.91

  Alignments for each domain:
  == domain 1  score: 45.9 bits;  conditional E-value: 4.3e-15
   EF-hand_7  2 eklkeaFkelDtdgdgyldkeellrllrkifqgagegsklsdeelellfkefDtdkdGvisfdEFlkly 70
                e++keaF+++D+d +g +++ el+ ++ k       + k++++el++++ e+D d++G+i f EFl+++
  KOO22319.1 15 EEVKEAFNLFDVDSSGAISYKELR-ACMK-----ALQIKVDKDELKKMILEVDADQSGEIEFPEFLTMM 77
                6789********************.7776.....9********************************99 PP

  == domain 2  score: 31.8 bits;  conditional E-value: 1e-10
   EF-hand_7   3 klkeaFkelDtdgdgyldkeellrllrkifqgagegsklsdeelellfkefDtdkd.G.visfdEFlklyr 71 
                 ++  ++k++D+dgdg ++ + l+r+ r      + g++++dee+  +++  ++++  G  +sfd+F++l++
  KOO22319.1  89 EILKVYKMFDVDGDGAITFASLKRVAR------ELGESMTDEEIASMLEHGNKSGKpGkGVSFDDFYRLMK 153
                 67889**********************......*****************9888876459********996 PP

>> EF-hand_6  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.9   0.0     9e-10   1.2e-06       1      30 [.      16      44 ..      16      45 .. 0.93
   2 ?    2.3   0.0      0.15   2.1e+02      16      26 ..      47      57 ..      47      60 .. 0.86
   3 !    8.4   0.0    0.0016       2.2       8      27 ..      59      78 ..      52      81 .. 0.86
   4 !   21.6   0.0   9.6e-08   0.00013       1      31 []      89     118 ..      89     118 .. 0.90
   5 ?    1.0   0.0      0.37   5.1e+02      17      28 ..     143     154 ..     132     166 .. 0.80

  Alignments for each domain:
  == domain 1  score: 27.9 bits;  conditional E-value: 9e-10
   EF-hand_6  1 elreaFklfDkdgdGkidaeElrkalrkal 30
                e++eaF+lfD+d +G i+++Elr++++ al
  KOO22319.1 16 EVKEAFNLFDVDSSGAISYKELRACMK-AL 44
                579***********************9.65 PP

  == domain 2  score: 2.3 bits;  conditional E-value: 0.15
   EF-hand_6 16 kidaeElrkal 26
                k+d++El+k++
  KOO22319.1 47 KVDKDELKKMI 57
                69******986 PP

  == domain 3  score: 8.4 bits;  conditional E-value: 0.0016
   EF-hand_6  8 lfDkdgdGkidaeElrkalr 27
                + D d +G+i + E+  +++
  KOO22319.1 59 EVDADQSGEIEFPEFLTMMT 78
                679*************9997 PP

  == domain 4  score: 21.6 bits;  conditional E-value: 9.6e-08
   EF-hand_6   1 elreaFklfDkdgdGkidaeElrkalrkalg 31 
                 e+ +++k+fD+dgdG i+++ l+++ r +lg
  KOO22319.1  89 EILKVYKMFDVDGDGAITFASLKRVAR-ELG 118
                 57799******************9999.776 PP

  == domain 5  score: 1.0 bits;  conditional E-value: 0.37
   EF-hand_6  17 idaeElrkalrk 28 
                 ++++++ ++++k
  KOO22319.1 143 VSFDDFYRLMKK 154
                 789999999997 PP

>> EF-hand_5  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.0   0.0   1.1e-07   0.00016       2      25 .]      18      41 ..      17      41 .. 0.90
   2 ?    3.9   0.0      0.03        42      15      24 ..      47      56 ..      47      58 .. 0.88
   3 !   12.5   0.0   5.7e-05     0.079       7      25 .]      59      77 ..      55      77 .. 0.91
   4 !   12.6   0.0   5.2e-05     0.071       6      18 ..      95     107 ..      95     114 .. 0.84
   5 ?   -0.6   0.0      0.82   1.1e+03      16      25 .]     143     152 ..     142     152 .. 0.88

  Alignments for each domain:
  == domain 1  score: 21.0 bits;  conditional E-value: 1.1e-07
                HHHHHHH-SS-SSCE-HHHHHHHH CS
   EF-hand_5  2 kdtFqaiDlNgDGkIskeELktlv 25
                k++F+ +D++ +G Is  EL++++
  KOO22319.1 18 KEAFNLFDVDSSGAISYKELRACM 41
                568******************975 PP

  == domain 2  score: 3.9 bits;  conditional E-value: 0.03
                CE-HHHHHHH CS
   EF-hand_5 15 kIskeELktl 24
                k++k+ELk++
  KOO22319.1 47 KVDKDELKKM 56
                89******96 PP

  == domain 3  score: 12.5 bits;  conditional E-value: 5.7e-05
                HH-SS-SSCE-HHHHHHHH CS
   EF-hand_5  7 aiDlNgDGkIskeELktlv 25
                ++D++++G I + E+ t++
  KOO22319.1 59 EVDADQSGEIEFPEFLTMM 77
                58*************9986 PP

  == domain 4  score: 12.6 bits;  conditional E-value: 5.2e-05
                 HHH-SS-SSCE-H CS
   EF-hand_5   6 qaiDlNgDGkIsk 18 
                 +++D++gDG I++
  KOO22319.1  95 KMFDVDGDGAITF 107
                 58*********97 PP

  == domain 5  score: -0.6 bits;  conditional E-value: 0.82
                 E-HHHHHHHH CS
   EF-hand_5  16 IskeELktlv 25 
                 +s++ +++l+
  KOO22319.1 143 VSFDDFYRLM 152
                 7999***987 PP

>> EF-hand_8  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.4   0.0   2.2e-06     0.003      26      53 ..      15      42 ..      14      44 .. 0.94
   2 !   24.4   0.3   1.4e-08   1.9e-05       9      52 ..      36      77 ..      35      79 .. 0.96
   3 !   20.8   0.6   1.9e-07   0.00026       2      54 ..     102     154 ..     101     155 .. 0.89
   4 ?    5.1   0.0     0.015        20       5      54 ..     143     154 ..     139     163 .. 0.63

  Alignments for each domain:
  == domain 1  score: 17.4 bits;  conditional E-value: 2.2e-06
   EF-hand_8 26 eevdilfrefDtdgdGkisfeEFcvlle 53
                eev + f++fD d +G+is++E  ++++
  KOO22319.1 15 EEVKEAFNLFDVDSSGAISYKELRACMK 42
                789999********************97 PP

  == domain 2  score: 24.4 bits;  conditional E-value: 1.4e-08
   EF-hand_8  9 elrrilrilglkkglseeevdilfrefDtdgdGkisfeEFcvll 52
                elr ++++l++k  + ++e+  ++ e+D d++G i f EF+ ++
  KOO22319.1 36 ELRACMKALQIK--VDKDELKKMILEVDADQSGEIEFPEFLTMM 77
                89****999***..****************************99 PP

  == domain 3  score: 20.8 bits;  conditional E-value: 1.9e-07
   EF-hand_8   2 kgkItreelrrilrilglkkglseeevdilfrefDtdgd.Gk.isfeEFcvller 54 
                 +g It+++l+r +r lg    +++ee+ +++ ++   g+ Gk +sf++F+ l+++
  KOO22319.1 102 DGAITFASLKRVARELGES--MTDEEIASMLEHGNKSGKpGKgVSFDDFYRLMKK 154
                 899********99999988..*************9988854359******99987 PP

  == domain 4  score: 5.1 bits;  conditional E-value: 0.015
   EF-hand_8   5 ItreelrrilrilglkkglseeevdilfrefDtdgdGkisfeEFcvller 54 
                 +                                      sf++F+ l+++
  KOO22319.1 143 V--------------------------------------SFDDFYRLMKK 154
                 4......................................55555555544 PP

>> EF-hand_9  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.6   0.0   2.3e-05     0.031       3      63 ..      20      78 ..      18      81 .. 0.91
   2 !   14.9   0.0   1.9e-05     0.026       3      64 ..      93     154 ..      92     156 .. 0.88

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 2.3e-05
   EF-hand_9  3 vFevcDtqktGrVpvsrlidyLravtaqdpeeseLeelakelDPdgedasvdldtflrvmr 63
                 F+++D+++ G +  ++l + ++a    +    eL +   e+D d   +++++  fl++m 
  KOO22319.1 20 AFNLFDVDSSGAISYKELRACMKALQI-KVDKDELKKMILEVDADQS-GEIEFPEFLTMMT 78
                6**********************9998.666669***********99.9*********996 PP

  == domain 2  score: 14.9 bits;  conditional E-value: 1.9e-05
   EF-hand_9   3 vFevcDtqktGrVpvsrlidyLravtaqdpees...eLeelakelDPdgedasvdldtflrvmre 64 
                 v++++D++  G ++ + l+ + r  ++ ++ e     Le   k+  P+     v +d+f r m++
  KOO22319.1  93 VYKMFDVDGDGAITFASLKRVARELGESMTDEEiasMLEHGNKSGKPGKG---VSFDDFYRLMKK 154
                 79*************************98888767778888888888777...**********97 PP

>> EF-hand_4  Cytoskeletal-regulatory complex EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.7   0.3   0.00013      0.19       9      69 ..      17      77 ..       7      84 .. 0.68
   2 !    7.5   0.0    0.0027       3.7      41      64 ..      86     109 ..      78     129 .. 0.85

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.00013
   EF-hand_4  9 ikkyweifsglkpednkltgdkvapvlkn..skleedklekiwdladidedgkldfeefciam 69
                +k+ +++f   +  +  ++ +++ + +k    k+++d+l+k+    d d+ g+++f ef  +m
  KOO22319.1 17 VKEAFNLFDVDS--SGAISYKELRACMKAlqIKVDKDELKKMILEVDADQSGEIEFPEFLTMM 77
                445555554433..3455555555566551146678899999999999999999999998887 PP

  == domain 2  score: 7.5 bits;  conditional E-value: 0.0027
   EF-hand_4  41 eedklekiwdladidedgkldfee 64 
                 ++d++ k++++ d+d dg + f  
  KOO22319.1  86 SKDEILKVYKMFDVDGDGAITFAS 109
                 578899**************9975 PP

>> Caleosin  Caleosin related protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.2   0.0      0.11   1.5e+02      10      34 ..      21      45 ..      12      49 .. 0.60
   2 ?    2.3   0.1       0.1   1.4e+02      93     129 ..      51      87 ..      45      96 .. 0.83
   3 !    8.7   0.0    0.0011       1.5      11      73 ..      95     157 ..      86     162 .. 0.87

  Alignments for each domain:
  == domain 1  score: 2.2 bits;  conditional E-value: 0.11
    Caleosin 10 vaFfDrdkdGiiypldtyrgfralg 34
                ++ fD d+ G i   +    ++al+
  KOO22319.1 21 FNLFDVDSSGAISYKELRACMKALQ 45
                3456666666666666666666555 PP

  == domain 2  score: 2.3 bits;  conditional E-value: 0.1
    Caleosin  93 qkfeeifskyakekkdaltlkevlellkgqrealDlf 129
                 +++ ++  + ++++++++++ e+l++++g++  +D  
  KOO22319.1  51 DELKKMILEVDADQSGEIEFPEFLTMMTGKMAQNDSK 87 
                 566777888899999**************99999875 PP

  == domain 3  score: 8.7 bits;  conditional E-value: 0.0011
    Caleosin  11 aFfDrdkdGiiypldtyrgfralgfnvllsllaalvihlalsyptlpswlpdplfriyvknih 73 
                 + fD d dG i++    r  r+lg +++   +a ++ h++ s +  ++   d ++r++ k++h
  KOO22319.1  95 KMFDVDGDGAITFASLKRVARELGESMTDEEIASMLEHGNKSGKPGKGVSFDDFYRLMKKKAH 157
                 67*************************999999999999999998888888888888777766 PP

>> EF-hand_11  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.0     1e-05     0.014      23      85 ..      18      80 ..      11      92 .. 0.85

  Alignments for each domain:
  == domain 1  score: 16.2 bits;  conditional E-value: 1e-05
                HHHHHHH-TT-SSEE-HHHHHHHHHHHT----HH.HHHHHHHTS-B-TTS-EEHHHHHHHHCS- CS
  EF-hand_11 23 vqefenfdtlksntvsreefraictrrvqiltde.qfdrlwselpvnakgrlkyqdflsklsie 85
                 + f+ fd   s ++s +e+ra c + +qi  d+ ++ ++  e+  +  g + +++fl+ ++ +
  KOO22319.1 18 KEAFNLFDVDSSGAISYKELRA-CMKALQIKVDKdELKKMILEVDADQSGEIEFPEFLTMMTGK 80
                567999***************8.9999***998526999*******************988755 PP

>> Dockerin_1  Dockerin type I domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.0   0.0      0.73     1e+03      37      46 ..      24      33 ..      15      45 .. 0.70
   2 ?   10.6   0.2   0.00035      0.49      34      57 ..      94     117 ..      23     118 .. 0.75

  Alignments for each domain:
  == domain 1  score: 0.0 bits;  conditional E-value: 0.73
                GSTT-SSCES CS
  Dockerin_1 37 aDvNgDGrvn 46
                +Dv+  G ++
  KOO22319.1 24 FDVDSSGAIS 33
                5666666665 PP

  == domain 2  score: 10.6 bits;  conditional E-value: 0.00035
                 HGGGSTT-SSCESHHHHHHHHHHH CS
  Dockerin_1  34 gkaaDvNgDGrvnalDallvinyL 57 
                  k++Dv+gDG ++   + +v ++L
  KOO22319.1  94 YKMFDVDGDGAITFASLKRVAREL 117
                 5899********988888888876 PP

>> DUF3008  Protein of unknwon function (DUF3008)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.4   0.1      0.99   1.4e+03      21      45 ..      32      56 ..      29      59 .. 0.78
   2 ?   11.3   0.1   0.00022       0.3      23      55 ..     107     140 ..     102     142 .. 0.79

  Alignments for each domain:
  == domain 1  score: -0.4 bits;  conditional E-value: 0.99
     DUF3008 21 tkkseLkgaSksMyesMsekeLeel 45
                 + +eL+   k +    +++eL+++
  KOO22319.1 32 ISYKELRACMKALQIKVDKDELKKM 56
                5667888888888888899999988 PP

  == domain 2  score: 11.3 bits;  conditional E-value: 0.00022
     DUF3008  23 kseLkgaSksMyesMsekeLeelA.sTkrkgkPe 55 
                   +Lk  ++++ esM+++e+  +  + +++gkP 
  KOO22319.1 107 FASLKRVARELGESMTDEEIASMLeHGNKSGKPG 140
                 578*****************98851567778886 PP

>> EF-hand_14  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.0   0.1     0.011        16       6      48 ..      21      63 ..      17      85 .. 0.87
   2 ?    5.4   0.0     0.017        24       5      49 ..      93     137 ..      88     158 .. 0.89

  Alignments for each domain:
  == domain 1  score: 6.0 bits;  conditional E-value: 0.011
  EF-hand_14  6 fdlfkdeetdklsvakllkaLaetGirkdDpRLkellkklkkv 48
                f+lf+ ++++ +s ++l + +++  i+ d   Lk+++ ++   
  KOO22319.1 21 FNLFDVDSSGAISYKELRACMKALQIKVDKDELKKMILEVDAD 63
                99*************************9999999999887655 PP

  == domain 2  score: 5.4 bits;  conditional E-value: 0.017
  EF-hand_14   5 lfdlfkdeetdklsvakllkaLaetGirkdDpRLkellkklkkve 49 
                 ++++f+ ++++ + +a l ++ +e G   +D  ++++l++ +k  
  KOO22319.1  93 VYKMFDVDGDGAITFASLKRVARELGESMTDEEIASMLEHGNKSG 137
                 799********************************9999877765 PP

>> Glyco_hyd_65N_2  Glycosyl hydrolase family 65, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   9.4e-05      0.13     145     211 ..      56     122 ..      49     135 .. 0.92

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 9.4e-05
  Glyco_hyd_65N_2 145 lvvrlsaskagklnltvsleselekktketvkgntltlrgalkaekdnglkfeailrvvatgGsvaa 211
                      +++++ a++ g++++   l+  + k ++++ k++ l+++   ++++d++++f+++ rv ++ G+  +
       KOO22319.1  56 MILEVDADQSGEIEFPEFLTMMTGKMAQNDSKDEILKVYKMFDVDGDGAITFASLKRVARELGESMT 122
                      8999*******************9**********************************999998844 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (169 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       658  (0.0367003); expected 358.6 (0.02)
Passed bias filter:                      515  (0.0287244); expected 358.6 (0.02)
Passed Vit filter:                        62  (0.00345808); expected 17.9 (0.001)
Passed Fwd filter:                        13  (0.000725082); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 0.44u 0.30s 00:00:00.74 Elapsed: 00:00:00.44
# Mc/sec: 1165.27
//
Query:       KOO22320.1  [L=246]
Description: fk506 binding protein 25kda [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.9e-19   69.2   0.0    5.1e-19   68.4   0.0    1.4  1  FKBP_C     FKBP-type peptidyl-prolyl cis-trans isomerase
  ------ inclusion threshold ------
       0.14   11.0   2.7       0.16   10.7   2.7    1.1  1  SAPS       SIT4 phosphatase-associated protein
       0.28   12.2   2.3        1.9    9.5   1.7    2.1  2  PdaC       Deacetylase PdaC
        1.2    9.0   7.7        1.7    8.5   7.7    1.2  1  PCRF       PCRF domain
        4.3    6.0  16.9        5.6    5.6  16.9    1.1  1  Caldesmon  Caldesmon
        9.5    5.2   8.0         13    4.8   8.0    1.1  1  Atg14      Vacuolar sorting 38 and autophagy-related subunit 


Domain annotation for each model (and alignments):
>> FKBP_C  FKBP-type peptidyl-prolyl cis-trans isomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   68.4   0.0   1.7e-22   5.1e-19       3      93 ..     125     236 ..     123     237 .. 0.87

  Alignments for each domain:
  == domain 1  score: 68.4 bits;  conditional E-value: 1.7e-22
                 CBB-TTCEEEEEEEEEETT..........SSEEEEHCC.......HTSEEEEETTSSSSCHHHHHHHTTSBTT-EEEEEEEGGGTTTTTTBCTTT.... CS
      FKBP_C   3 eeakegdtVtvhykgkled..........gkvfdssrs.......rakplefkvGsgqvikGfeealegmkvGekrtltippelaYgekglaggv.... 80 
                 +++  gd+V + y+gk++d          gk+fd+s++        ++pl+fk+G+g+ i+G+eeal++m +Ge+ ++ti p++aY + gl+  +    
  KOO22320.1 125 VKPVVGDKVGITYVGKFADgtkhegidysGKEFDNSMRkqgkgpaVQTPLTFKLGDGRAIRGWEEALKTMALGEEIEVTIRPKWAYRKGGLQDDNgkwi 223
                 56888************543455556677*******66677777789*****************************************99977778899 PP

                 B.TTSEEEEEEEE CS
      FKBP_C  81 ippnatLvFeveL 93 
                 +ppna LvF+  L
  KOO22320.1 224 VPPNASLVFQMRL 236
                 *********9887 PP

>> SAPS  SIT4 phosphatase-associated protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   2.7   5.4e-05      0.16     262     356 ..      48     137 ..       2     140 .. 0.57

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 5.4e-05
        SAPS 262 tseeealedvsdeaskeesaesedltdkdedvsleesksakdenkesdesesdtaeesseededdasseesalaeeteeklrkkpvvGDlLKikl 356
                  +++e l++        e+a+sed +++ +   +ee+++ ++    + ++e+ +   ++ ed+ + + e s+++ +++ + + kpvvGD   i +
  KOO22320.1  48 AALKERLNESR-----AEAAKSEDAAHEAKLRREEEERKMREADAVRRAEEKAKIGPAQPEDDGEVHMEISIPKLKKACDETVKPVVGDKVGITY 137
                 22233333333.....333333333333333333333333334444557777788888889999999999999999999999*******988776 PP

>> PdaC  Deacetylase PdaC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   1.7   0.00062       1.9       3      56 ..       7      65 ..       5      87 .. 0.64
   2 ?    0.8   0.0      0.34     1e+03       7      26 ..     107     126 ..     102     166 .. 0.74

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 0.00062
                EE-SSEEEEEEEEEE-S-S-HHHHHHHHHHH......HHHHHHHHHHHHHHHH....HHHHTT CS
        PdaC  3 eetevleikikyPvisglknkevqdkinkki......ekdadkflkeyekeake...eakknd 56
                 e+++  +k+  P+++g++nk+   k+nk+i      e    ++l+ +++  +e   ea k++
  KOO22320.1  7 TEEKLAALKLRLPELEGKANKNERTKVNKDIynlenaE----AYLAALKERLNEsraEAAKSE 65
                56777789**********************87744443....444443333333322222222 PP

  == domain 2  score: 0.8 bits;  conditional E-value: 0.34
                 SEEEEEEEEEE-S-S-HHHH CS
        PdaC   7 vleikikyPvisglknkevq 26 
                  ++++i++P++++++++ v+
  KOO22320.1 107 EVHMEISIPKLKKACDETVK 126
                 567899*****998887776 PP

>> PCRF  PCRF domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.5   7.7   0.00056       1.7       3     106 ..       9     113 ..       7     114 .. 0.67

  Alignments for each domain:
  == domain 1  score: 8.5 bits;  conditional E-value: 0.00056
                 HHHTTTTTST.-GGGTTTGGGSSSTTHHHHHTHHHHHHHHHHHHHTTTHHH...HT.....-S-...-GGG.THHHHHHHHHH..HHHHHT-..SSSTT CS
        PCRF   3 eeleelekklsdpevwedqekakklskelaeleeivealeeleealedleeakelle.edeela.elaeee.leelekeleeleeelkklLlpkdende 98 
                 e+l+ l+ +l + e  +++++ +k++k++ +le+  + l +l+e+l++ ++  e+++ ed+  + +l +ee  ++++++    ++e k  + p +++d+
  KOO22320.1   9 EKLAALKLRLPELEGKANKNERTKVNKDIYNLENAEAYLAALKERLNESRA--EAAKsEDAAHEaKLRREEeERKMREADAVRRAEEKAKIGPAQPEDD 105
                 667777777777777888899999999999999999999999999888887..333224432221222333133333333333458888999******* PP

                 SEEEEEEE CS
        PCRF  99 knaileir 106
                  ++ +ei+
  KOO22320.1 106 GEVHMEIS 113
                 ******95 PP

>> Caldesmon  Caldesmon
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.6  16.9    0.0019       5.6     245     329 ..       6      93 ..       3     107 .. 0.67

  Alignments for each domain:
  == domain 1  score: 5.6 bits;  conditional E-value: 0.0019
   Caldesmon 245 eaekkleelkrrrdekeseefeklrqkqqeaeveleelkkkree.rrkvre..eeekkrkqeeaerkvreeeekrkmkeeiErRRaEA 329
                 e+e+kl  lk r  e e +  ++ r k ++   +le+ +      + +++e   e  k ++  +e k+r eee rkm+e    RRaE 
  KOO22320.1   6 ETEEKLAALKLRLPELEGKANKNERTKVNKDIYNLENAEAYLAAlKERLNEsrAEAAKSEDAAHEAKLRREEEERKMREADAVRRAEE 93 
                 67777777777777777777777777777766666665543332233333300344455555667777*****************994 PP

>> Atg14  Vacuolar sorting 38 and autophagy-related subunit 14
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.8   8.0    0.0042        13      25     100 ..       5      85 ..       3     105 .. 0.82

  Alignments for each domain:
  == domain 1  score: 4.8 bits;  conditional E-value: 0.0042
       Atg14  25 yelrerlaklksekeslkkkiekalegke.....eaeqledkiknkkakleelksliadlrerlqelkdklsqlkkeieek 100
                  e  e+la lk++  +l++k +k + +k      + e++e+ +  +k++l+e +++ a++++  +e k ++++  ++++e+
  KOO22320.1   5 QETEEKLAALKLRLPELEGKANKNERTKVnkdiyNLENAEAYLAALKERLNESRAEAAKSEDAAHEAKLRREEEERKMREA 85 
                 578899****************99998887777777778888888888888888888888888888888888888877765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (246 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1630  (0.0909142); expected 358.6 (0.02)
Passed bias filter:                      800  (0.0446204); expected 358.6 (0.02)
Passed Vit filter:                       103  (0.00574488); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.54u 0.28s 00:00:00.82 Elapsed: 00:00:00.43
# Mc/sec: 1717.26
//
Query:       KOO22321.1  [L=4700]
Description: ipt tig domain-containing protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
   1.8e-144  470.2  79.4    3.7e-10   39.7   1.5   30.7 30  TIG          IPT/TIG domain
    7.6e-34  115.6   0.0       0.31   11.1   0.0   20.1 24  TIG_plexin   TIG domain
  ------ inclusion threshold ------
       0.18   11.6   0.1         39    4.2   0.0    4.1  3  hemP         Hemin uptake protein hemP
        2.5    8.1   6.8         29    4.6   0.2    3.9  4  Bact_lectin  Bacterial lectin


Domain annotation for each model (and alignments):
>> TIG  IPT/TIG domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.0   0.2   1.2e-07   0.00055       3      85 .]      36     120 ..      35     120 .. 0.85
   2 !   28.8   0.6   2.2e-10   9.7e-07       1      62 [.     124     202 ..     124     217 .. 0.75
   3 !   32.7   0.2   1.3e-11   5.9e-08       3      85 .]     478     563 ..     476     563 .. 0.93
   4 !   15.6   0.0   2.7e-06     0.012      11      84 ..     579     656 ..     575     657 .. 0.87
   5 !   23.3   0.0   1.1e-08   5.2e-05       3      83 ..     660     740 ..     659     742 .. 0.84
   6 ?   -4.2   0.0         4   1.8e+04       5      21 ..     750     766 ..     749     767 .. 0.88
   7 !    4.5   0.1     0.008        36       1      21 [.     889     909 ..     889     910 .. 0.94
   8 ?    2.3   0.1     0.039   1.8e+02       2      61 ..    1251    1338 ..    1250    1362 .. 0.74
   9 !   28.7   0.0   2.3e-10     1e-06       2      62 ..    1374    1446 ..    1373    1470 .. 0.81
  10 !    7.1   0.0    0.0013       5.8       4      63 ..    1477    1534 ..    1474    1543 .. 0.86
  11 ?    2.2   0.0     0.043   1.9e+02       1      76 [.    1772    1857 ..    1772    1865 .. 0.73
  12 !   28.8   0.0   2.1e-10   9.5e-07       1      85 []    1990    2081 ..    1990    2081 .. 0.91
  13 !   16.1   0.0   1.9e-06    0.0085      22      84 ..    2120    2180 ..    2116    2181 .. 0.89
  14 !   27.5   0.0   5.5e-10   2.5e-06       1      65 [.    2185    2259 ..    2185    2272 .. 0.88
  15 ?    4.2   0.1      0.01        47       1      21 [.    2494    2514 ..    2494    2518 .. 0.91
  16 !   17.4   0.2   7.5e-07    0.0034       3      85 .]    2544    2633 ..    2543    2633 .. 0.81
  17 !   39.7   1.5   8.3e-14   3.7e-10       1      76 [.    2637    2715 ..    2637    2725 .. 0.83
  18 !    4.9   0.0    0.0063        28       8      79 ..    2736    2814 ..    2733    2819 .. 0.69
  19 !   20.2   0.0     1e-07   0.00045       1      46 [.    2824    2868 ..    2824    2916 .. 0.83
  20 ?   -1.4   0.1      0.56   2.5e+03      47      73 ..    2981    3012 ..    2968    3022 .. 0.66
  21 !   18.4   0.5   3.6e-07    0.0016       1      78 [.    3028    3107 ..    3028    3112 .. 0.88
  22 !   26.3   0.1   1.3e-09     6e-06       1      67 [.    3119    3186 ..    3119    3197 .. 0.90
  23 !    8.7   0.0   0.00041       1.8       3      45 ..    3438    3494 ..    3436    3522 .. 0.77
  24 ?    2.1   0.0     0.044     2e+02       1      20 [.    3535    3554 ..    3535    3606 .. 0.88
  25 !   28.4   0.0   2.9e-10   1.3e-06       3      79 ..    3660    3746 ..    3657    3753 .. 0.89
  26 !   23.4   0.0   1.1e-08   4.8e-05       1      81 [.    3758    3867 ..    3758    3871 .. 0.84
  27 !    8.0   0.0   0.00064       2.9       3      61 ..    3877    3944 ..    3875    3954 .. 0.92
  28 !   28.2   0.0   3.4e-10   1.5e-06       2      85 .]    4207    4302 ..    4206    4302 .. 0.88
  29 !   17.8   0.0   5.9e-07    0.0026       1      85 []    4306    4399 ..    4306    4399 .. 0.73
  30 !   12.2   0.0   3.3e-05      0.15       1      45 [.    4403    4451 ..    4403    4462 .. 0.88

  Alignments for each domain:
  == domain 1  score: 20.0 bits;  conditional E-value: 1.2e-07
         TIG   3 issisPnsgsasgGttititGtnFgtnssdssvtiggtpctvtasvssttlvcttPpgp..sgllnvsvlvdg..aqlrsdnttftY 85 
                 + +isP+ g+  gGt++++tGt +  +    ++ +g++ + + ++ +   + c++P+    + +++ +v  dg     +  +++++Y
  KOO22321.1  36 VLTISPTAGPMLGGTLVNLTGTRL-GDGAAWRCSFGTSIVGAEYFEDAERVGCLSPSSDvaA-SVPTNVSIDGgsSFCSGEPQPYQY 120
                 668*********************.**********************************741.555555555543777778888877 PP

  == domain 2  score: 28.8 bits;  conditional E-value: 2.2e-10
         TIG   1 PvissisPnsgsasgGttititGtnF......gtnssdssvtiggtpctvta.....svssttlvcttPpgp......s 62 
                 P +s+isP+sgs++gGt +t+ G++F          ++ ++++g+++    +      vs+ +++c++P         s
  KOO22321.1 124 PNVSAISPASGSTEGGTVVTVLGSGFsaltsdRVVCTFGRLRVGDAYRAGAVvgtvgNVSDGQIECIAPTANaadavgS 202
                 89************************955554444455555555555555559****************9986666442 PP

  == domain 3  score: 32.7 bits;  conditional E-value: 1.3e-11
         TIG   3 issisPnsgsasgGttititGtnFgtnssdssvtiggtpctvta.svssttlvcttPpgpsg.llnvsvlvdg..aqlrsdnttftY 85 
                 + s+sP++g+ +g+tt+t+ G++F +   d+++++g  +  vt+ s    +lvc +P++  + l+++ v  ++  ++++s++++f++
  KOO22321.1 478 VFSFSPTTGPEQGNTTVTVVGSHF-AGGADYRCRFGQPNEHVTHaSYVAPKLVCPSPAVRRAqLVPLEVSLNNrvDSTSSSDVQFRF 563
                 569*********************.******************998888999********555*********************975 PP

  == domain 4  score: 15.6 bits;  conditional E-value: 2.7e-06
         TIG  11 gsasg.GttititGtnFgtnssdssvtiggtpctvta....svssttlvcttPpgp.sgllnvsvlvdgaqlrsdnttft 84 
                   ++g G ++ + G nF +  +d++v +g     +t     +v+++ +  ++P+g  sgl +v ++ +g q+++++t+f 
  KOO22321.1 579 VAPAGvGANVSLLGANF-SGGDDYRVAFGRPGGSTTIvpatFVNDSLVLAVAPAGLgSGLATVALTLNG-QQYTAPTPFP 656
                 567788***********.**********9766555555699***************777**********.9999999996 PP

  == domain 5  score: 23.3 bits;  conditional E-value: 1.1e-08
         TIG   3 issisPnsgsasgGttititGtnFgtnssdssvtiggtpctvtasvssttlvcttPpgp.sgllnvsvlvdgaqlrsdnttf 83 
                 ++s+sP++g++ gGt++ ++Gt F ++   +++++ ++  t  +  ++ tl+c++P+ + +g+  + v  +  + + +n+tf
  KOO22321.1 660 VNSLSPSTGPTLGGTLVRVNGTAF-DSGGAYRCRFADAGETEASRMDDETLTCLSPAATvEGTRALEVSLNARDFTASNVTF 740
                 789*********************.************9998888***************85565555555554466666665 PP

  == domain 6  score: -4.2 bits;  conditional E-value: 4
         TIG   5 sisPnsgsasgGttiti 21 
                 s++P++g+++g tt+ +
  KOO22321.1 750 SVYPQNGPVAGATTVAV 766
                 799********999976 PP

  == domain 7  score: 4.5 bits;  conditional E-value: 0.008
         TIG   1 PvissisPnsgsasgGttiti 21 
                 P ++++ P +g+asgGtt+t+
  KOO22321.1 889 PNVTNLAPVRGPASGGTTLTL 909
                 899****************95 PP

  == domain 8  score: 2.3 bits;  conditional E-value: 0.039
         TIG    2 vissisPnsgsasgGttititGtnF..............................gtnssdssvtiggtpctvtasvssttlvcttPpgp 61  
                  +++  sP+sg+++gGt+i +  +n                               + ++s +++ +gg++ t+  +v++  ++ctt p  
  KOO22321.1 1251 SLNVASPSSGPVAGGTIIRLFTSNVeanltllaedprtlttvvhvdpltaaltlgTFSTSAYRCFLGGDNLTAQ-FVNE-AVRCTTAPFE 1338
                  55666899999999999887777777777888888888888888888888888878889999999999999998.8886.4666666665 PP

  == domain 9  score: 28.7 bits;  conditional E-value: 2.3e-10
         TIG    2 vissisPnsgsasgGttititGtnFgtnssdssvtiggtpctvta..........svssttlvcttPpgp...s 62  
                  v+s  sP sg+++gGt++++ Gtn+ +n sd+++++g+ p +  +           v  + ++c +Pp     +
  KOO22321.1 1374 VVSGASPLSGPTNGGTLLVFEGTNL-ANGSDYRCRFGSGPLVEESpgadvtyasyDVARSVVRCRSPPAIsgsA 1446
                  68999********************.***************999999999988888888888******995543 PP

  == domain 10  score: 7.1 bits;  conditional E-value: 0.0013
         TIG    4 ssisPnsgsasgGttitit.GtnFgtnssdssvtiggtpctvtasvssttlvcttPpgpsg 63  
                  +++sP+sg+++g t++ ++ G+++ t +  +++++g + + +t   +  +l c +P  + +
  KOO22321.1 1477 TALSPSSGPTDGETLVSVSiGSDL-TGAFAPRCRFGAEVVAAT--ATAGQLHCASPHASLA 1534
                  789**************966****.************999887..9999999999987744 PP

  == domain 11  score: 2.2 bits;  conditional E-value: 0.043
         TIG    1 PvissisPnsgsasg.GttititGtnF.....gtnssdssvtiggtpctvta....svssttlvcttPpgpsg.llnvsvlvdgaql 76  
                  P ++++sP+sg++ g    +++ Gt+          s++++++gg  +   +      + +++ c++P+g+++  l+v v  +g q+
  KOO22321.1 1772 PNVTALSPASGPTLGnPPALMLAGTGRhttggLHGGSHYRCRFGGGGAFEYVdavvNRTADEVYCVAPAGQPAaALPVGVSLNG-QQ 1857
                  677777787777777777777777666666665777888999988776333366668889999********8889999999999.44 PP

  == domain 12  score: 28.8 bits;  conditional E-value: 2.1e-10
         TIG    1 PvissisPnsgsasgGttititGtnFgtnssdssvtiggtpctvta........svssttlvcttPpgpsg.llnvsvlvdgaqlrsdnttftY 85  
                  P++ss+sP+sg+ sg tt++++G+++ +  s+ ++ +g+  +++t             ++l+c++Ppg+++   ++ +  +g q+ s +++ft+
  KOO22321.1 1990 PIVSSLSPSSGPLSGATTLVLNGRGL-AAGSHAQCWLGSGRSEATLtneamesgILGLSQLRCEAPPGVTAeATELRLALNG-QQASFSVPFTF 2081
                  99************************.************9999997777777777778888********8879*********.99999999986 PP

  == domain 13  score: 16.1 bits;  conditional E-value: 1.9e-06
         TIG   22 tGtnFgtnssdssvtiggtpctvtasvssttlvcttPpgpsg.llnvsvlvdgaqlrsdnttft 84  
                  tG  F +n +d+++++g++  ++t  vs+ +l c +P+ +s+  + + v  +g q++  +++f+
  KOO22321.1 2120 TGGSF-ANGTDYRCRFGNASQPAT-LVSDGELHCHAPSEASAsRVDLRVSLNG-QQYGPSLDFE 2180
                  78889.99****************.***************888*********9.7766666665 PP

  == domain 14  score: 27.5 bits;  conditional E-value: 5.5e-10
         TIG    1 PvissisPnsgsasgGttititGtnFgtnssdssvtiggtpctvta...........svssttlvcttPpgpsgll 65  
                  P+++si+P+sg+++gG ++ + Gt+F +n+s + +++gg  ++v+            +vs + ++c++P+g +++l
  KOO22321.1 2185 PQVDSIEPSSGVFAGGAIVDVAGTGF-ANRSLLACRFGGPIVDVSRgqfanatvpgtFVSASMVRCVAPGGDTAGL 2259
                  89************************.888888888888888888888888888888*************987765 PP

  == domain 15  score: 4.2 bits;  conditional E-value: 0.01
         TIG    1 PvissisPnsgsasgGttiti 21  
                  P +ss+sP+sg+ sg t++ +
  KOO22321.1 2494 PEVSSVSPTSGPLSGATRVAV 2514
                  89*************999876 PP

  == domain 16  score: 17.4 bits;  conditional E-value: 7.5e-07
         TIG    3 issisPnsgsasgGttititGtnF..gtnssdssvtiggtpctvtasvssttl.......vcttPpgpsgllnvsvlvdgaqlrsdnttftY 85  
                  issisP++g+++g t++++tGt +  g++++     +gg+ +t+   v+ +          c tP  p+g +++ +  +  q++s + tf Y
  KOO22321.1 2544 ISSISPSCGPTDGLTLVNVTGTALegGSDRTCQLMPLGGALATAR-IVNASRSpgslgsvLCSTPHAPIGASSLRISPNA-QQYSPPATFDY 2633
                  9***********************966666666666788888877.44444444444777********999999999999.99999999987 PP

  == domain 17  score: 39.7 bits;  conditional E-value: 8.3e-14
         TIG    1 PvissisPnsgsasgGttititGtnF.gtnssdssvtiggtpctvtasvssttlvcttPpgpsg.llnvsvlvdg.aql 76  
                  Pv+s+ sP+sg++sgGt ++i+G+n+ +  + ++ +++g+  ++ ta  s+ t++c++P  p++ + ++ ++v    q+
  KOO22321.1 2637 PVVSTSSPSSGPTSGGTVVVISGSNLaSGARCNVVCRFGELLSPGTAAPSEGTITCQAPRNPAAlGTTLPLYVSLnRQQ 2715
                  99************************************************************55444444444433233 PP

  == domain 18  score: 4.9 bits;  conditional E-value: 0.0063
         TIG    8 PnsgsasgGttititGtnFgtnssdssvtiggtpctvta......svssttlvcttPpgp...sgllnvsvlvdgaqlrsd 79  
                  P sg++ gGt++ ++ + +    +d+++++      +++        s++ l+c +P++    sg++n+sv  +  q + +
  KOO22321.1 2736 PRSGPVRGGTRVRVNASSL-RGGDDYTCRFVWLTGGLSHvvnasyRASDDLLTCDSPAVEsaaSGTYNFSVALNR-QDYLA 2814
                  6677777777777777777.555555555543333333333457899*************999999999999888.55555 PP

  == domain 19  score: 20.2 bits;  conditional E-value: 1e-07
         TIG    1 PvissisPnsgsasgGttititGtnFgtnssdssvtiggtpctvta 46  
                  P  ss sP+sg+++gG ++ti+G ++    +++++++g+ p  +++
  KOO22321.1 2824 PEHSSASPASGPIAGGALVTIRGAHL-GRGDNYTCRFGDYPLHLVV 2868
                  566899********************.************9977665 PP

  == domain 20  score: -1.4 bits;  conditional E-value: 0.56
         TIG   47 svssttlvcttPpgp.....sgllnvsvlvdg 73  
                  sv  + lvct+Pp       +g  +v v  + 
  KOO22321.1 2981 SVVGSVLVCTSPPANvssdsGGARQVAVSLNA 3012
                  6777889******9988876445555555544 PP

  == domain 21  score: 18.4 bits;  conditional E-value: 3.6e-07
         TIG    1 PvissisPnsgsasgGttititGtnFgtnssdssvtiggtpctvta..svssttlvcttPpgp.sgllnvsvlvdgaqlrs 78  
                  P++s+ +P  g++sgGt+i+++G n+ +  sd+ + +g   + + a    ++ t+ c+++    +g+l vsv  +g++  +
  KOO22321.1 3028 PIVSTATPIGGPTSGGTRIIVSGANL-AGGSDYLCDLGAGRVLLPAtfDPTNGTVSCEPTEALeAGTLMVSVRPNGQNAAT 3107
                  899***********************.***************999988899999999999888555999999999955444 PP

  == domain 22  score: 26.3 bits;  conditional E-value: 1.3e-09
         TIG    1 PvissisPnsgsasgGttititGtnF..gtnssdssvtiggtpctvtasvssttlvcttPpgpsgllnv 67  
                  P++++isP+sg+  g tt+ +tG  +  +++  ++++++g+ +++++ + s ++++c++P  ++++ + 
  KOO22321.1 3119 PQLDAISPTSGPGLGHTTVRFTGAALldTSSNGELRCRFGSHEVPAS-FDSTSQITCLAPTAAQSGAST 3186
                  8899***********************999999**************.************998554444 PP

  == domain 23  score: 8.7 bits;  conditional E-value: 0.00041
         TIG    3 issisPnsgsasgGttititGtnF..............gtnssdssvtiggtpctvt 45  
                   ss+ P+ g+++gGt +t+ G  +              g+ ++++  ++g+  ++++
  KOO22321.1 3438 ASSVVPTIGPTAGGTALTVAGALLhggsdyrcrftrndGSFREEPAALVGDVVTCNS 3494
                  589*********************666666666666666666666666666666665 PP

  == domain 24  score: 2.1 bits;  conditional E-value: 0.044
         TIG    1 PvissisPnsgsasgGttit 20  
                  P++  isP+sg+a+gGt++ 
  KOO22321.1 3535 PTVFQISPASGPAAGGTLVA 3554
                  77888************985 PP

  == domain 25  score: 28.4 bits;  conditional E-value: 2.9e-10
         TIG    3 issisPnsgsasgGttititGtnF...gtnssdssvtiggtpctvta....svssttlvcttPpgp....sgllnvsvlvdgaqlrsd 79  
                  iss+sP+sg+ +gG ++ti+G ++   +   +d+++ +g++ ++++       s ++lvc++P++     +  +++ v  +g q++s+
  KOO22321.1 3660 ISSVSPSSGPNDGGARVTIHGFGLwgsQGALTDVRCAFGDATVPASRagvgGESASNLVCISPATIrlvtPRMYPLRVALNG-QQYSA 3746
                  9**************************9999**************999999999999******9998887778888888888.55554 PP

  == domain 26  score: 23.4 bits;  conditional E-value: 1.1e-08
         TIG    1 PvissisPnsgsasg.GttititGtnFgtnssdssvtiggtpctvta.................svssttlvcttPpgp............sgllnv 67  
                  P+iss+sP+sg+a   Gt+iti G+++g   +++++ +  + ++                       s +l c++P+              ++++++
  KOO22321.1 3758 PIISSLSPASGPATTgGTSITIAGRGLGRGGTHLRCSYSAAVSDGAGgggaadgdglrmvlnatRLASGSLLCISPAELnrigepldapdvAASVRL 3854
                  9************999*********************999999888888888999999988888888888899999888888888888887778888 PP

         TIG   68 svlvdgaqlrsdnt 81  
                   v  +g q++s++ 
  KOO22321.1 3855 AVSLNG-QQMSNAS 3867
                  888888.6666655 PP

  == domain 27  score: 8.0 bits;  conditional E-value: 0.00064
         TIG    3 issisPnsgsasgGttititGtnF........gtnssdssvtiggtpctvta.svssttlvcttPpgp 61  
                  i+ +sP+sgs+ gGt+++++ +n          t+++++++++g + ++++    ss +++c++P+ +
  KOO22321.1 3877 ITRLSPTSGSFLGGTSVNLSLSNAaldtntpnLTSADSMRCRFGVAIVPASRlDRSSEHVRCVAPSSV 3944
                  99******************9999******999*************999999999**********987 PP

  == domain 28  score: 28.2 bits;  conditional E-value: 3.4e-10
         TIG    2 vissisPnsgsasgGttititGtnF.gtnssdssvtiggtpctvta.....svssttlvcttPpgp.....sgllnvsvlvdg.aqlrsdnttftY 85  
                   iss+ P++g+a+gGt++t++G nF g  ++++++++g+++    +          tl+c+tP+ p     +++l+++v  +g  + +++  +f+Y
  KOO22321.1 4207 RISSVLPTQGPAAGGTRLTLRGGNFdGGARQEYKCRFGSDALGWRVvlgtfDERGGTLRCVTPAAPalqypAAPLELQVSSNGqEYVTNATIPFEY 4302
                  69***************************************99998999776677899************666*******9996666666666666 PP

  == domain 29  score: 17.8 bits;  conditional E-value: 5.9e-07
         TIG    1 PvissisPnsgsasgGttititGtnF...gtnssdssvtiggtpctvtasvssttlvcttPpgp.....sgllnvsvlvdg.aqlrsdnttftY 85  
                  P i  ++P+ g+a gGt++ + Gt++   ++  +  +v ++g+p++++   +s  l cttP+ p     + +l v + vd  + +  ++ tf+Y
  KOO22321.1 4306 PEIELLTPTGGPALGGTLLRVFGTHLyagTSGHRRCRVGVDGSPVPASFDPTSGALLCTTPASPgltpaTRPLLVALNVDHfDVSAASSPTFEY 4399
                  889999*********************65555566666666666666659**************999543344444444446555555555665 PP

  == domain 30  score: 12.2 bits;  conditional E-value: 3.3e-05
         TIG    1 PvissisPnsgsasgGttititGtnF.....gtnssdssvtiggtpctvt 45  
                  P + si+P sg+++ Gtt+t++G  +     + ++ ++++++g++  ++t
  KOO22321.1 4403 PYLASIEPRSGFSN-GTTVTFRGGALrrtesDGTTGSTRCRFGNAMLNAT 4451
                  7788*********8.***************999999*******9866655 PP

>> TIG_plexin  TIG domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.4   0.0     0.034   1.5e+02      14      62 ..      53     101 ..      41     104 .. 0.78
   2 !    6.6   0.0    0.0017       7.6       2      73 ..     131     214 ..     130     219 .. 0.87
   3 !    6.8   0.0    0.0015       6.7      24      58 ..     504     540 ..     482     564 .. 0.69
   4 !   11.1   0.0     7e-05      0.31      24      53 ..     686     716 ..     675     739 .. 0.85
   5 ?   -0.8   0.0      0.34   1.5e+03       2      34 ..     753     787 ..     752     799 .. 0.70
   6 ?   -1.9   0.0      0.75   3.4e+03      24      55 ..    1309    1339 ..    1301    1357 .. 0.77
   7 ?    3.3   0.0     0.019        85      24      54 ..    1401    1442 ..    1382    1469 .. 0.72
   8 !    5.0   0.0    0.0054        24      27      58 ..    1506    1536 ..    1480    1544 .. 0.79
   9 ?   -0.3   0.0      0.25   1.1e+03      24      54 ..    1807    1842 ..    1803    1850 .. 0.73
  10 ?    0.3   0.0      0.16     7e+02      24      54 ..    1907    1959 ..    1881    1972 .. 0.68
  11 ?   -2.2   0.0      0.98   4.4e+03       2      63 ..    1997    2057 ..    1996    2082 .. 0.48
  12 !    8.7   0.0   0.00038       1.7      25      55 ..    2128    2158 ..    2122    2165 .. 0.84
  13 !    6.2   0.0    0.0023        10       2      52 ..    2644    2696 ..    2643    2706 .. 0.82
  14 !    4.7   0.0    0.0065        29       2      56 ..    2736    2796 ..    2735    2808 .. 0.67
  15 ?   -2.6   0.0       1.3   5.9e+03      14      34 ..    2843    2862 ..    2831    2869 .. 0.71
  16 !    4.3   0.0     0.009        40      26      74 ..    2963    3014 ..    2955    3025 .. 0.66
  17 !    9.2   0.0   0.00026       1.2      10      55 ..    3134    3181 ..    3125    3190 .. 0.80
  18 !    4.9   0.0    0.0057        25      22      53 ..    3462    3497 ..    3453    3512 .. 0.82
  19 ?   -2.2   0.0      0.92   4.1e+03      21      56 ..    3561    3606 ..    3542    3616 .. 0.66
  20 ?   -0.8   0.0      0.35   1.6e+03      26      55 ..    3692    3726 ..    3685    3733 .. 0.76
  21 ?   -2.8   0.0       1.4   6.4e+03      12      70 ..    3776    3852 ..    3765    3869 .. 0.64
  22 ?    3.4   0.0     0.018        79      19      55 ..    3905    3945 ..    3891    3952 .. 0.79
  23 ?    3.1   0.0     0.021        95      24      56 ..    4236    4274 ..    4213    4303 .. 0.63
  24 ?   -1.4   0.0      0.55   2.5e+03      25      74 ..    4337    4386 ..    4322    4400 .. 0.65

  Alignments for each domain:
  == domain 1  score: 2.4 bits;  conditional E-value: 0.034
  TIG_plexin  14 tltvenlpalseklkCvFgdleeseatvs.dnkvtCdtPkpeelppipeg 62 
                 +lt ++l +  +  +C+Fg++ + ++ ++  ++v C +P+++    +p++
  KOO22321.1  53 NLTGTRLGDG-AAWRCSFGTSIVGAEYFEdAERVGCLSPSSDVAASVPTN 101
                 5555555553.4789****998888887769*********9988877776 PP

  == domain 2  score: 6.6 bits;  conditional E-value: 0.0017
  TIG_plexin   2 Psnisvsttseltltvenlpal.seklkCvFgdlee...........seatvsdnkvtCdtPkpeelppipegkdhvtvkLsir 73 
                 P++ s +  + +t+  + + al s+++ C+Fg l++           +   vsd+++ C  P ++   ++ + + +++v+L ++
  KOO22321.1 131 PASGSTEGGTVVTVLGSGFSALtSDRVVCTFGRLRVgdayragavvgTVGNVSDGQIECIAPTANAADAVGSASFSFNVPLPVV 214
                 7777777888899999999999888******9888888888999988889999**************99999999999999876 PP

  == domain 3  score: 6.8 bits;  conditional E-value: 0.0015
  TIG_plexin  24 seklkCvFgdlee..seatvsdnkvtCdtPkpeelpp 58 
                 +++++C+Fg+ +e  + a     k+ C +P++++   
  KOO22321.1 504 GADYRCRFGQPNEhvTHASYVAPKLVCPSPAVRRAQL 540
                 679*****9666633677777**********976654 PP

  == domain 4  score: 11.1 bits;  conditional E-value: 7e-05
  TIG_plexin  24 seklkCvFgdleeseat.vsdnkvtCdtPkp 53 
                 ++ ++C+F d+ e+ea  ++d+++tC +P++
  KOO22321.1 686 GGAYRCRFADAGETEASrMDDETLTCLSPAA 716
                 679******99999976477*********87 PP

  == domain 5  score: -0.8 bits;  conditional E-value: 0.34
  TIG_plexin   2 Psnisvsttseltltvenlpal..seklkCvFgdl 34 
                 P+n +v  ++++ +       +  +++++C+Fg++
  KOO22321.1 753 PQNGPVAGATTVAVRSVASGGManGSHYQCRFGST 787
                 777777777766666555555554779*****987 PP

  == domain 6  score: -1.9 bits;  conditional E-value: 0.75
  TIG_plexin   24 seklkCvFgdleeseatvsdnkvtCdtPkpee 55  
                  ++ ++C  g   + +a++ ++ v+C+t ++e 
  KOO22321.1 1309 TSAYRCFLGGD-NLTAQFVNEAVRCTTAPFEA 1339
                  45788988776.5677888999*****99875 PP

  == domain 7  score: 3.3 bits;  conditional E-value: 0.019
  TIG_plexin   24 seklkCvFgdlee...........seatvsdnkvtCdtPkpe 54  
                  +++++C+Fg+              +  +v ++ v+C +P++ 
  KOO22321.1 1401 GSDYRCRFGSGPLveespgadvtyASYDVARSVVRCRSPPAI 1442
                  569*****7443244455555533666677*********974 PP

  == domain 8  score: 5.0 bits;  conditional E-value: 0.0054
  TIG_plexin   27 lkCvFgdleeseatvsdnkvtCdtPkpeelpp 58  
                   +C+Fg   + +at + ++++C++P++++ p+
  KOO22321.1 1506 PRCRFGAE-VVAATATAGQLHCASPHASLAPA 1536
                  48***997.8999**************99997 PP

  == domain 9  score: -0.3 bits;  conditional E-value: 0.25
  TIG_plexin   24 seklkCvFg...dleeseatvs..dnkvtCdtPkpe 54  
                  +++++C+Fg     e   a+v+   ++v+C  P+ +
  KOO22321.1 1807 GSHYRCRFGgggAFEYVDAVVNrtADEVYCVAPAGQ 1842
                  5689****633355557777777799*****99765 PP

  == domain 10  score: 0.3 bits;  conditional E-value: 0.16
  TIG_plexin   24 seklkCvFgdlee...................seatvs...dnkvtCdtPkpe 54  
                  +++++C+F d                      ++ t +   +++v+C++P++ 
  KOO22321.1 1907 GDDYRCRFADDALsndtrtvifaheaapyyrvTPGTYDptnGGSVSCYSPPAA 1959
                  66899999543333345567777778888888444433334999999999874 PP

  == domain 11  score: -2.2 bits;  conditional E-value: 0.98
  TIG_plexin    2 PsnisvsttseltltvenlpalseklkCvFgdlee.........seatvsdnkvtCdtPkpeelppipegk 63  
                  Ps+ ++s +++l l+ + l a s + +C  g+ ++         +  ++  ++++C+ P+         g 
  KOO22321.1 1997 PSSGPLSGATTLVLNGRGLAAGS-HAQCWLGSGRSeatltneamESGILGLSQLRCEAPP---------GV 2057
                  77777777777778777776654.678888777443333222211111224445554444.........33 PP

  == domain 12  score: 8.7 bits;  conditional E-value: 0.00038
  TIG_plexin   25 eklkCvFgdleeseatvsdnkvtCdtPkpee 55  
                   +++C+Fg++++ +  vsd++++C+ P+  +
  KOO22321.1 2128 TDYRCRFGNASQPATLVSDGELHCHAPSEAS 2158
                  58********88888899*********8765 PP

  == domain 13  score: 6.2 bits;  conditional E-value: 0.0023
  TIG_plexin    2 Psnisvsttseltltvenlpal.seklkCvFgdl.eeseatvsdnkvtCdtPk 52  
                  Ps+ + s  + + ++ +nl +    ++ C+Fg+l ++ +a +s++++tC+ P 
  KOO22321.1 2644 PSSGPTSGGTVVVISGSNLASGaRCNVVCRFGELlSPGTAAPSEGTITCQAPR 2696
                  7888888888999999***99945599****876145668899********97 PP

  == domain 14  score: 4.7 bits;  conditional E-value: 0.0065
  TIG_plexin    2 PsnisvsttseltltvenlpalseklkCvF.....gdleeseat..vsdnkvtCdtPkpeel 56  
                  P++ +v+  ++++++ + l   +++++C+F     g +++ +a    sd+ +tCd+P++e+ 
  KOO22321.1 2736 PRSGPVRGGTRVRVNASSLR-GGDDYTCRFvwltgGLSHVVNASyrASDDLLTCDSPAVESA 2796
                  55556666666666666653.4779*****888863444444441266**********9875 PP

  == domain 15  score: -2.6 bits;  conditional E-value: 1.3
  TIG_plexin   14 tltvenlpalseklkCvFgdl 34  
                  t+  ++l + +++++C+Fgd+
  KOO22321.1 2843 TIRGAHLGR-GDNYTCRFGDY 2862
                  555555554.679*****997 PP

  == domain 16  score: 4.3 bits;  conditional E-value: 0.009
  TIG_plexin   26 klkCvF...gdlee.seatvsdnkvtCdtPkpeelppipegkdhvtvkLsirs 74  
                  + +C+F   g++++  +a v ++ + C++P+++     + g  +v+v+L+ ++
  KOO22321.1 2963 DRRCRFaapGQATVsVAASVVGSVLVCTSPPANVSSD-SGGARQVAVSLNAQQ 3014
                  568999666455551556688***********77665.666666666665544 PP

  == domain 17  score: 9.2 bits;  conditional E-value: 0.00026
  TIG_plexin   10 tseltltvenlpal..seklkCvFgdleeseatvsdnkvtCdtPkpee 55  
                  +++++ t + l ++  +++l+C+Fg++e+ ++  s +++tC  P + +
  KOO22321.1 3134 HTTVRFTGAALLDTssNGELRCRFGSHEVPASFDSTSQITCLAPTAAQ 3181
                  567888888999887677********966666666*********9876 PP

  == domain 18  score: 4.9 bits;  conditional E-value: 0.0057
  TIG_plexin   22 alseklkCvF....gdleeseatvsdnkvtCdtPkp 53  
                  + +++++C+F    g+ +e++a + ++ vtC++ ++
  KOO22321.1 3462 HGGSDYRCRFtrndGSFREEPAALVGDVVTCNSSAA 3497
                  44789*****777669999*************9765 PP

  == domain 19  score: -2.2 bits;  conditional E-value: 0.92
  TIG_plexin   21 palseklkCvFgdlee.........seat.vsdnkvtCdtPkpeel 56  
                   +ls++ +C+F +            s+at v  + v C  P+  + 
  KOO22321.1 3561 VELSATHTCRFRFGAAqagaidvngSAATgVGASIVLCRAPALPQN 3606
                  57788999**975555445555555555535588888888887665 PP

  == domain 20  score: -0.8 bits;  conditional E-value: 0.35
  TIG_plexin   26 klkCvFgdlee..seatvs...dnkvtCdtPkpee 55  
                  +++C Fgd+++  s+a v     +++ C +P++ +
  KOO22321.1 3692 DVRCAFGDATVpaSRAGVGgesASNLVCISPATIR 3726
                  689****9998544444446678999****98765 PP

  == domain 21  score: -2.8 bits;  conditional E-value: 1.4
  TIG_plexin   12 eltltvenlpalseklkCvFgdlee..................seatvsdnkvtCdtPkpeelppipegkdhvtvkL 70  
                   +t+  + l + + +l+C++  + +                  ++ ++ ++++ C +P+  ++   p +   v++++
  KOO22321.1 3776 SITIAGRGLGRGGTHLRCSYSAAVSdgaggggaadgdglrmvlNATRLASGSLLCISPAELNRIGEPLDAPDVAASV 3852
                  77788888888888888888655445666666666777777766667789999999998766655566654444333 PP

  == domain 22  score: 3.4 bits;  conditional E-value: 0.018
  TIG_plexin   19 nlpal..seklkCvFgdleeseatvs..dnkvtCdtPkpee 55  
                  n p+l  +++++C+Fg + + +++++  +++v+C  P++ +
  KOO22321.1 3905 NTPNLtsADSMRCRFGVAIVPASRLDrsSEHVRCVAPSSVD 3945
                  55667545699*****99888888777799*******9765 PP

  == domain 23  score: 3.1 bits;  conditional E-value: 0.021
  TIG_plexin   24 seklkCvFgdlee....seatvs..dnkvtCdtPkpeel 56  
                   +++kC+Fg+          t++  +++++C tP++  l
  KOO22321.1 4236 RQEYKCRFGSDALgwrvVLGTFDerGGTLRCVTPAAPAL 4274
                  679*****9775544445555557799*******98544 PP

  == domain 24  score: -1.4 bits;  conditional E-value: 0.55
  TIG_plexin   25 eklkCvFg.dleeseatvs..dnkvtCdtPkpeelppipegkdhvtvkLsirs 74  
                  ++ +C+ g d ++ +a ++  ++ + C+tP++   p ++  +  ++v L++ +
  KOO22321.1 4337 GHRRCRVGvDGSPVPASFDptSGALLCTTPAS---PGLTPATRPLLVALNVDH 4386
                  555777764556666765555999******99...555556666677776655 PP

>> hemP  Hemin uptake protein hemP
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.0   0.0     0.043   1.9e+02       5      24 ..    1211    1231 ..    1207    1231 .. 0.74
   2 ?    4.2   0.0    0.0086        39      17      31 ..    3461    3475 ..    3459    3475 .. 0.92
   3 ?   -2.4   0.0      0.95   4.3e+03      14      24 ..    3507    3517 ..    3504    3517 .. 0.87

  Alignments for each domain:
  == domain 1  score: 2.0 bits;  conditional E-value: 0.043
                  HHHTT.SSSEEEEEETTEEEE CS
        hemP    5 reLlg.ggrevlIeHgGetYr 24  
                  ++Ll   +r v I ++G++Y+
  KOO22321.1 1211 ATLLStAERAVEITLNGQQYV 1231
                  55554157899*********5 PP

  == domain 2  score: 4.2 bits;  conditional E-value: 0.0086
                  EETTEEEEEEE-TTS CS
        hemP   17 eHgGetYrLRiTrng 31  
                   HgG  Yr R Trn+
  KOO22321.1 3461 LHGGSDYRCRFTRND 3475
                  6************97 PP

  == domain 3  score: -2.4 bits;  conditional E-value: 0.95
                  EEEEETTEEEE CS
        hemP   14 vlIeHgGetYr 24  
                  + I+++G++Y+
  KOO22321.1 3507 LSISLNGQQYT 3517
                  67********7 PP

>> Bact_lectin  Bacterial lectin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.6   0.2    0.0064        29      47     188 ..     291     430 ..     288     434 .. 0.69
   2 ?   -3.4   0.2       1.8   7.9e+03      48      85 ..    1068    1113 ..    1066    1115 .. 0.76
   3 ?   -0.6   0.0      0.26   1.2e+03      22      70 ..    2288    2334 ..    2273    2353 .. 0.79
   4 ?    3.2   0.8     0.017        76      48      84 ..    4523    4560 ..    4515    4563 .. 0.78

  Alignments for each domain:
  == domain 1  score: 4.6 bits;  conditional E-value: 0.0064
                  -EEEEEEEE--S...B.--EEEEEEES....T--.--SGGGTTTTTSTT-EEEEEE-S--..SS-EEEEEEE.............-TT--SSS--EEE CS
  Bact_lectin  47 dFtlkgsvnlgqsnaggaDGigFalqp....gql.GssGgglGigglpnafgfklDtyyNkagkpygafvktdangsletvkss.ssksledgkwhpi 138
                   Ft ++s   g    +gaDG +F+ +     + + G+ G g G+    +  gf +D  yN +g+  +  v++ +  +++ ++++  s++ ++ + +p+
   KOO22321.1 291 AFTASWSHFVG--GGTGADGYSFVYADllhvHTVfGEMGVGDGLIVRFRTRGF-FDDSYN-EGHGIIEAVYNGTLLNSTFMGDRlRSDGFNEIRAQPV 384
                  68888898899..3688*******99954332224774444333333344455.788889.89999999999777777777777766665566799** PP

                  EEEE..-TTTEEEETHHHT-.............SEEEEEEEEE-SSSB-- CS
  Bact_lectin 139 tisYdastkttvtyddgsstvsidltkkvtkgktyvafgiaastGgatnl 188
                   ++Yd ++  +v++d    +v   +t      +  +++g+ + tG+++ +
   KOO22321.1 385 SVRYDDAGL-SVSFD---GEVVLVSTVPSWAPEVGWSLGWGGRTGERKDN 430
                  ****77777.89999...44455555666666777788888888877655 PP

  == domain 2  score: -3.4 bits;  conditional E-value: 1.8
                   EEEEEEEE--....S...B.--EEEEEEEST--.....--SGGGTTT CS
  Bact_lectin   48 Ftlkgsvnlg....qsnaggaDGigFalqpgql.....GssGgglGi 85  
                   F+l++++ +g    +  a  +DG +F+ + g+l     G+sG+++G+
   KOO22321.1 1068 FNLTFELLIGkenrDLMAPHGDG-SFTVNLGELparafGMSGAAFGL 1113
                   99999999998888444567999.78888877444556999999997 PP

  == domain 3  score: -0.6 bits;  conditional E-value: 0.26
                   EEEEE-SSTT-EEEEEESSEEETTS-EEEEEEEE--.S...B.--EEEEE CS
  Bact_lectin   22 ivtltedkknqaGavtlknkiDlskdFtlkgsvnlg.qsnaggaDGigFa 70  
                   +v lt  + +q G++  +      + F+ ++ v lg +    g  G++F 
   KOO22321.1 2288 SVVLTSGQPQQVGSLAIEPTTRAARYFRARFHVHLGtD---LGSSGVSFC 2334
                   899*********************************32...346777775 PP

  == domain 4  score: 3.2 bits;  conditional E-value: 0.017
                   EEEEEEEE--S...B.--EEEEEEES...T----SGGGTT CS
  Bact_lectin   48 FtlkgsvnlgqsnaggaDGigFalqp...gqlGssGgglG 84  
                   F+ ++++ +g    ggaDG++F       g++G+ G+g G
   KOO22321.1 4523 FRATFKLRMG--GGGGADGVSFSYGDlpaGNIGELGAGRG 4560
                   999*******..3689******988755455777666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (4700 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       246  (0.0137208); expected 358.6 (0.02)
Passed bias filter:                      191  (0.0106531); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 1.51u 0.31s 00:00:01.82 Elapsed: 00:00:00.55
# Mc/sec: 25531.81
//
Query:       KOO22322.1  [L=921]
Description: serine threonine kinase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    3.5e-37  128.1   0.0    1.7e-36  125.8   0.0    1.9  1  Pkinase_Tyr  Protein tyrosine kinase
    6.7e-37  127.3   0.0    1.5e-36  126.1   0.0    1.6  1  Pkinase      Protein kinase domain
    0.00015   21.6   0.1    0.00033   20.5   0.1    1.6  1  DUF4448      Protein of unknown function (DUF4448)
  ------ inclusion threshold ------
      0.064   13.5   2.8        3.4    7.9   0.1    2.7  2  DUF4381      Domain of unknown function (DUF4381)
      0.079   11.7   0.3       0.13   10.9   0.3    1.3  1  Herpes_gE    Alphaherpesvirus glycoprotein E
      0.083   13.3   0.0       0.66   10.4   0.0    2.2  2  CRC_subunit  Chromatin remodelling complex Rsc7/Swp82 subunit
       0.17   11.5   0.0         13    5.3   0.0    2.4  2  FTA2         Kinetochore Sim4 complex subunit FTA2
        8.9    5.9   7.4       0.49   10.0   1.4    2.0  2  TMEM100      Transmembrane protein 100


Domain annotation for each model (and alignments):
>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  125.8   0.0   7.7e-40   1.7e-36       2     253 ..     249     518 ..     248     521 .. 0.81

  Alignments for each domain:
  == domain 1  score: 125.8 bits;  conditional E-value: 7.7e-40
                  EEEEEEEEESSEEEEEEEEET...........TTTSSEEEEEEEEESTTSSHHH.HHHHHHHHHHHHTS-BTTB--EEEEEESSSSEEEEEE--TTEB CS
  Pkinase_Tyr   2 elgkklGeGafGkVvegtlkg...........ekekkevkVavKtlkeeateee.keelleeakimkklkhpnivkllgvctkeepllivteyvkgGd 87 
                  ++ +klGeG  G Vv+g ++g           + +++  ++       +  +++ +++l +e++ +++++hpn++kl+g+c +  p +i++ y+++G+
   KOO22322.1 249 RILEKLGEGGQGVVVRGWWHGmevaikqprapKGSSRGKQISPDASGPSPPHNSfNQALRREVRALSRVRHPNVIKLHGACFEPVP-MILMSYAPSGT 345
                  6789****************77777763333333333333333333222223334899999*********************6555.9********** PP

                  HHHHHHHTCTTTSBHHHHHHHHHHHHHHHHHHHHTTEEEST-SGGGEEEEETTEEEE-STTTHEETTTSSEEEETTSSTSGGGGS-HHHHHHSE.EEH CS
  Pkinase_Tyr  88 LlkfLrkkekekltlkdllsfalqvAkGmeyLeskklvHrdlaarNvLlsenkvvkisDfGLardiekddeyvkkeeaklpvkWmapEslkekk.fts 184
                  L++ L ++  +  t  +++++ + +A+Gme ++++k++H dl   NvL+   +v  i+DfGL+ + + ++  +++ +++  + + apE + +   +  
   KOO22322.1 346 LQDALDNH--KFQTPLTMVRVLAGIARGMEAVHAHKIIHLDLKPENVLIGPLDVPWITDFGLSTSANMTSMSQSTLGGRGTLPFKAPELFVHPPhVGP 441
                  *******9..66777899************************************************999999****************9887654999 PP

                  HHHHHHHHHHHHHHHTTSSGTTTTS..HHHHHHHHHHTTEE..S-BB.....TTSBHHHHHHHHHHT-SSGGGS--HH CS
  Pkinase_Tyr 185 ksDvWsfGvllwEiftlgespypgl..kneevleklkegkr..lekp.....ekcpeelyelmkkcweedpeeRptfs 253
                  ++Dv++f++l w +++ ge+py+++   ++++ +++ +g r  l+ p     +k+ +++ +l++ cw+++ ++Rptf 
   KOO22322.1 442 EADVYAFSILAWIVVC-GEQPYAKMqaAATSLPQAVVQGVRptLADPneewrDKTISAMVRLIEGCWHAEYTQRPTFG 518
                  ************7777.********54445677888888885544551111145667789999*************95 PP

>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  126.1   0.0   6.9e-40   1.5e-36       3     256 ..     250     518 ..     248     524 .. 0.86

  Alignments for each domain:
  == domain 1  score: 126.1 bits;  conditional E-value: 6.9e-40
                 EEEEEEEESSEEEEEEEETTTTEEEEEEEEECHCHCHHHH.................HHHHHHHHHHHHHSCTTB--EEEEEEESSEEEEEEE--TTEB CS
     Pkinase   3 kleklGeGsfGkVykaveketgkivAvKkikkekakkkke.................kkvlrEikilkklkhpnivrlyevfeekdelylvleyvegge 84 
                  leklGeG+ G+V+++   + g +vA+K+ +  k +++ +                 ++++rE++ l +++hpn+++l +++ e+  ++ ++ y++ g+
  KOO22322.1 250 ILEKLGEGGQGVVVRGW--WHGMEVAIKQPRAPKGSSRGKqispdasgpspphnsfnQALRREVRALSRVRHPNVIKLHGACFEPVPMI-LMSYAPSGT 345
                 679**************..9*********99988877766688999**********9999***********************887765.899****** PP

                 HHHHHHHHSS--HHHHHHHHHHHHHHHHHHHHTTEE-SS-SGGGEEEETTTEEEE-SGTTSEESSSSCS...BCTTTSCGGGS-HHHHTTSCB.SHHHH CS
     Pkinase  85 ladllerkgslseeeakkiakqilegleylHskgiiHrDlKpeNiLidekgelKitDFGlakelesssk...ltsfvgtseYlAPEvlkeney.skkvD 179
                 l+d+l +++  ++ ++ ++++ i++g+e +H+++iiH DlKpeN+Li   ++  itDFGl++ ++ +s    +    gt  + APE+  + ++ ++++D
  KOO22322.1 346 LQDALDNHKFQTPLTMVRVLAGIARGMEAVHAHKIIHLDLKPENVLIGPLDVPWITDFGLSTSANMTSMsqsTLGGRGTLPFKAPELFVHPPHvGPEAD 444
                 ******9999999***********************************9999**********9999887444555679*********9666665***** PP

                 HHHHHHHHHHHHHSS-STTTSSHHHHHHHHHHTHHHHHHHCT..SHH...HHHTTS-HHHHHHHHHHT-SSGCCSTTHH CS
     Pkinase 180 vWslGvilyelltgkppfsgekgkekvekeldqlekilkilg..etkeklpeaseiseeakdllkkllkkdpkkRltae 256
                 v++  ++ + +++g++p++   + + +++ l q  ++++ ++    + + +++++  + + +l++ +++ + ++R+t+ 
  KOO22322.1 445 VYAFSILAWIVVCGEQPYA---KMQAAATSLPQ--AVVQGVRptLADPNEEWRDKTISAMVRLIEGCWHAEYTQRPTFG 518
                 *******************...55545566666..222222233345666677778999*****************975 PP

>> DUF4448  Protein of unknown function (DUF4448)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.5   0.1   1.5e-07   0.00033     113     185 ..      83     156 ..      59     160 .. 0.73

  Alignments for each domain:
  == domain 1  score: 20.5 bits;  conditional E-value: 1.5e-07
     DUF4448 113 lvslqpdnvkdeveikkGpkVsltkkedlk..kledkeseegkkaekyalaialPvvvvvlvlgligfvlwnrkk 185
                 l+s++  ++  +  + + p V+++ ++       ++++++ +  +   +laia+P +++ l+++l+++++w+r++
  KOO22322.1  83 LASVTGISIA-VLAVVTPPIVAIVAPPPPPssPSPSPPPATTAGRAITILAIAVPAAIIGLLCCLAMVCWWMRRR 156
                 4444444443.77788888888888877764444455666677778899************************65 PP

>> DUF4381  Domain of unknown function (DUF4381)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.9   0.1    0.0015       3.4      26      59 ..     137     173 ..     116     194 .. 0.66
   2 ?    4.8   0.5     0.014        32      60     116 ..     603     659 ..     579     679 .. 0.81

  Alignments for each domain:
  == domain 1  score: 7.9 bits;  conditional E-value: 0.0015
     DUF4381  26 aalll.llllvlalwllrrrkrn..rreAlreLaalr 59 
                 aa++  l++l+++ w++rrr+ +  r++  + L++++
  KOO22322.1 137 AAIIGlLCCLAMVCWWMRRRQVKlrRKNVNHWLRNVS 173
                 3333346666667777776666665666666666655 PP

  == domain 2  score: 4.8 bits;  conditional E-value: 0.014
     DUF4381  60 adeadakellaalselLkrvalayypreevagltGeaWlafLdatlpakgfasga..ra 116
                 +d a++k++l+  + lL++ a++  +  ++ g tG + ++ L a l+++++   +  ++
  KOO22322.1 603 SDLAEEKAALETSQGLLRQHAFSVLS--QMPGGTGGELASALSAMLQQQSDMFRQamQE 659
                 4677899999999**********999..9***************999999888754344 PP

>> Herpes_gE  Alphaherpesvirus glycoprotein E
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.3     6e-05      0.13     313     389 ..      93     169 ..      61     187 .. 0.73

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 6e-05
                 EEE---XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
   Herpes_gE 313 vveqhlPqrdedeaestkskeiappnngtsraalllaavliaalllvllglsalvcltkrrrrkkrrvksrlsdeap 389
                 v     P+  +  a++  +++  p +++ + a +  + + ia+   ++++l +l+++  ++rr++ ++ ++  ++  
  KOO22322.1  93 VLAVVTPPIVAIVAPPPPPSSPSPSPPPATTAGRAITILAIAVPAAIIGLLCCLAMVCWWMRRRQVKLRRKNVNHWL 169
                 55555666666677777888888888999988888898988888888888888888888999887766555555543 PP

>> CRC_subunit  Chromatin remodelling complex Rsc7/Swp82 subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   0.0      0.77   1.7e+03      71      95 ..     690     714 ..     686     722 .. 0.89
   2 ?   10.4   0.0   0.00029      0.66      66     116 ..     835     887 ..     825     892 .. 0.90

  Alignments for each domain:
  == domain 1  score: -0.6 bits;  conditional E-value: 0.77
  CRC_subunit  71 llkllatqeekedLiergllpsslk 95 
                  ll+++a++++  +L++r++l+++++
   KOO22322.1 690 LLPMEASSSKLMQLVKREFLKDKYR 714
                  78999****************9997 PP

  == domain 2  score: 10.4 bits;  conditional E-value: 0.00029
  CRC_subunit  66 kknpqllkllatqeekedLiergllpsslksrqiklvta..rsvFlefGarii 116
                  + ++ql+k+l +q e e L++ ++ +++ +  +i++v+a  +  Fl+fG + +
   KOO22322.1 835 RAYKQLRKMLKDQCEDEYLVHCEMTKEKANDGSIEFVSAgsKDRFLHFGQQCL 887
                  5789**********************************955668*****9875 PP

>> FTA2  Kinetochore Sim4 complex subunit FTA2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.3   0.0     0.006        13      13      52 ..     238     276 ..     228     329 .. 0.72
   2 ?    3.4   0.0     0.023        51     175     206 ..     362     393 ..     350     397 .. 0.87

  Alignments for each domain:
  == domain 1  score: 5.3 bits;  conditional E-value: 0.006
        FTA2  13 LkpFdfsaekdiefleyLgkglhsiVlkvkirgkeYALKl 52 
                 Lk+F+ ++  +i++le Lg+g +++V++    g e A+K 
  KOO22322.1 238 LKAFELDTR-EIRILEKLGEGGQGVVVRGWWHGMEVAIKQ 276
                 788998888.******************999999999993 PP

  == domain 2  score: 3.4 bits;  conditional E-value: 0.023
        FTA2 175 vsqlpkllrdlkklhklgIvvrDlkeenyidg 206
                 v+ l  + r ++ +h++ I++ Dlk+en++ g
  KOO22322.1 362 VRVLAGIARGMEAVHAHKIIHLDLKPENVLIG 393
                 56788999********************9876 PP

>> TMEM100  Transmembrane protein 100
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   0.5       3.1   6.9e+03      36      78 ..      21      65 ..      13      85 .. 0.59
   2 ?   10.0   1.4   0.00022      0.49      81     121 ..     124     165 ..     121     175 .. 0.78

  Alignments for each domain:
  == domain 1  score: -3.4 bits;  conditional E-value: 3.1
     TMEM100 36 lvsevqL.aaatGGaekscYrCviPfgvvvL.vaGvvvtavaytf 78
                +  e+q  +aa  G + s    ++  g vv+ v  +  ta+a + 
  KOO22322.1 21 VRTEMQSaIAAQAGVDPSAVMVTVTSGSVVVgVRILTPTAMATSV 65
                555665414566777777777777666544313333445555544 PP

  == domain 2  score: 10.0 bits;  conditional E-value: 0.00022
     TMEM100  81 hgsvisvlglvLLsaGlvll.assavCWkvrrrrkkerrres 121
                  g+ i +l++++ +a + ll   + vCW +rrr+ k rr++ 
  KOO22322.1 124 AGRAITILAIAVPAAIIGLLcCLAMVCWWMRRRQVKLRRKNV 165
                 5677888888888887755516799*************9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (921 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       919  (0.0512577); expected 358.6 (0.02)
Passed bias filter:                      540  (0.0301188); expected 358.6 (0.02)
Passed Vit filter:                        50  (0.00278878); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.75u 0.30s 00:00:01.05 Elapsed: 00:00:00.46
# Mc/sec: 6024.07
//
Query:       KOO22323.1  [L=385]
Description: ribosomal RNA small subunit methyltransferase h [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.1e-86  291.1   0.0    1.1e-46  159.7   0.1    2.0  2  Methyltransf_5   MraW methylase family
    0.00058   19.7   0.0       0.21   11.4   0.0    2.3  2  Methyltransf_31  Methyltransferase domain
     0.0021   18.7   0.1        4.8    7.9   0.0    2.7  2  Methyltransf_11  Methyltransferase domain
  ------ inclusion threshold ------
      0.026   15.2   0.1        0.8   10.4   0.0    2.4  2  Methyltransf_25  Methyltransferase domain
       0.13   13.0   0.1        8.5    7.2   0.0    2.5  2  Methyltransf_12  Methyltransferase domain


Domain annotation for each model (and alignments):
>> Methyltransf_5  MraW methylase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  129.5   0.0   5.1e-41   1.8e-37       3     134 ..      38     176 ..      36     181 .. 0.94
   2 !  159.7   0.1   3.2e-50   1.1e-46     127     308 ..     198     375 ..     188     376 .. 0.91

  Alignments for each domain:
  == domain 1  score: 129.5 bits;  conditional E-value: 5.1e-41
                     XX--TTTHHHHHHT---TT-EEEES--TTSHHHHHHHTT--TT..EEEEEES-HHHHHHHTT.....---..EEEEES-GGGHHHHHHHTT...T CS
  Methyltransf_5   3 eHvpVLlqevvellepkedgvyiDaTlGaggHsealLeqlsel..rligidrDksalarakerLkefekr..ltlvkgnfkelkealaean...v 90 
                      HvpVL  e+v+ l +++ g+y+D+TlG+ggHs alL+ l  +  +lig+drD++ala+a +rL ++ +    tlv++nf +l+ al++     +
      KOO22323.1  38 YHVPVLCAEAVSWLITNPAGTYVDGTLGGGGHSAALLQVLAPNggHLIGVDRDPEALATAGARLVHHLETghATLVRSNFGALAGALRTVRgpdA 132
                     5*************************************9988779*********************998778***************99887777 PP

                     T-EEEEEEE-S--HHHHH-GGG---SSS--BS---S-TTSS--H CS
  Methyltransf_5  91 tkvdgillDLGvSslqldkaerGFsfaedapLDmRmdqsaeltA 134
                       +dg+llDLGvSs ql+++ rGFsf++d+pLDmRm q+a+ + 
      KOO22323.1 133 PLLDGMLLDLGVSSHQLNEPSRGFSFMRDGPLDMRMAQTATASG 176
                     899***********************************998775 PP

  == domain 2  score: 159.7 bits;  conditional E-value: 3.2e-50
                     -TTSS--HHHHHHH--HHHHHHHHHHHH--TTHHHHHHHHHHHHHHS---BHHHHHHHHHHHS-------...-TTHHHHHHHHHHHHTHHHHHH CS
  Methyltransf_5 127 dqsaeltAaevlnrlseeeLakilkeygeekfakriakaivekrkkkpiettkelaevikkvvpakekrk.kihpatrvFQAlRIavNdEleele 220
                      + + ltAa ++n+++e++La++l +ygee+ ++ria+ iv++r   p+++t+el+ev+k++  + ++ k  ++ + rvFQAlRI+vN+E++ele
      KOO22323.1 198 RRAEPLTAATIVNQWDEKALADVLWKYGEERESRRIARSIVAAR---PLHSTAELVEVLKTAGTKNYEPKeVRNRLSRVFQALRIEVNQEMAELE 289
                     556789*************************************9...*************997766655516799******************** PP

                     HHHHHHHHHEEEEEEEEEEESSHHHHHHHHHHHHHTT-------------------EEEEE.E.E---HHHHHH-GGGTT-EEEEEEE CS
  Methyltransf_5 221 elleaalellakggrlavisFhSledrivkkvfkeaskkeevPaglpvaseelkaklklitkkpilpseeeikeNprsrsakLrviek 308
                      +l aa +l+++ggrlav+s+hSledr vk+++++ s    +P++   a  +  a  k +t+++i+pse+e++ N r+rs++Lrv e+
      KOO22323.1 290 AVLLAAARLVRPGGRLAVMSYHSLEDRRVKRLLRSGSFGDGTPPKD--AYGNELAPWKPLTRQAITPSEAELEVNSRARSVRLRVGER 375
                     **************************************99998776..345556899****************************886 PP

>> Methyltransf_31  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.4   0.0   5.8e-05      0.21      14      51 ..      66     104 ..      57     123 .. 0.73
   2 !    6.0   0.0    0.0026       9.2      85     117 ..     283     315 ..     259     353 .. 0.80

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 5.8e-05
  Methyltransf_31  14 tGeltfelae.elgpkaevvGiDiseeaielArenaqkl 51 
                       G  + +l + ++  +++++G+D+++ea+  A +++ ++
       KOO22323.1  66 GGGHSAALLQvLAPNGGHLIGVDRDPEALATAGARLVHH 104
                      444555555524445899*************99876555 PP

  == domain 2  score: 6.0 bits;  conditional E-value: 0.0026
  Methyltransf_31  85 naladpdkileeiervlkpggilliedprllae 117
                      + +a+++++l  + r+++pgg+l++ +++ l++
       KOO22323.1 283 QEMAELEAVLLAAARLVRPGGRLAVMSYHSLED 315
                      789999*****************9888774444 PP

>> Methyltransf_11  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.9   0.0    0.0014       4.9       7      41 ..      70     104 ..      63     122 .. 0.72
   2 !    7.9   0.0    0.0013       4.8      70      96 .]     281     307 ..     271     307 .. 0.86

  Alignments for each domain:
  == domain 1  score: 7.9 bits;  conditional E-value: 0.0014
                      TSHHHHHHHHTTSEEEEEES-HHHHHHHHHHCCHH CS
  Methyltransf_11   7 tGrlaealakrgarvvgvDlskemlklakekasee 41 
                      + +l++ la +g++++gvD ++e+l++a ++ +  
       KOO22323.1  70 SAALLQVLAPNGGHLIGVDRDPEALATAGARLVHH 104
                      445566666899*************9998877665 PP

  == domain 2  score: 7.9 bits;  conditional E-value: 0.0013
                      -CCC-CCHHHHHHHHHHHEEEEEEEEE CS
  Methyltransf_11  70 vlhhvedpekalkeiaRvLkpgGllvi 96 
                      v + ++++e++l  +aR+++pgG+l++
       KOO22323.1 281 VNQEMAELEAVLLAAARLVRPGGRLAV 307
                      56677899****************975 PP

>> Methyltransf_25  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.0   0.00022       0.8       7      43 ..      65     103 ..      60     127 .. 0.73
   2 ?    2.2   0.0     0.081   2.9e+02      77      97 .]     283     303 ..     241     303 .. 0.82

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00022
                      TTSHHHHHHHCTS..TSSEEEEEESSHHHHHHHHHHHHH CS
  Methyltransf_25   7 GtGrltlalakrl..gkakvtgvDiseemleaareraee 43 
                      G G +++al++ l  + ++++gvD ++e+l++a +r+ +
       KOO22323.1  65 GGGGHSAALLQVLapNGGHLIGVDRDPEALATAGARLVH 103
                      77777878777776536****************998855 PP

  == domain 2  score: 2.2 bits;  conditional E-value: 0.081
                      SSHHHHHHHHHHHHHHEEEEE CS
  Methyltransf_25  77 lsdedlekalkeiarvLkpgG 97 
                       + ++le++l  +ar+++pgG
       KOO22323.1 283 QEMAELEAVLLAAARLVRPGG 303
                      45568999************9 PP

>> Methyltransf_12  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.2   0.0    0.0024       8.5       4      41 ..      67     102 ..      64     117 .. 0.82
   2 ?    3.3   0.0     0.039   1.4e+02      74      99 .]     280     305 ..     269     305 .. 0.76

  Alignments for each domain:
  == domain 1  score: 7.2 bits;  conditional E-value: 0.0024
  Methyltransf_12   4 GcGtGsllralleklpdieytgvDispsaiedakekla 41 
                      G+ +++ll++l+++  + +++gvD +p+a++ a ++l 
       KOO22323.1  67 GGHSAALLQVLAPN--GGHLIGVDRDPEALATAGARLV 102
                      67778888999999..**************77766664 PP

  == domain 2  score: 3.3 bits;  conditional E-value: 0.039
  Methyltransf_12  74 nvlhhlkdirevldnirklLkpgGrl 99 
                      +v + ++++++vl  +++l++pgGrl
       KOO22323.1 280 EVNQEMAELEAVLLAAARLVRPGGRL 305
                      334444999***************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (385 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       455  (0.0253779); expected 358.6 (0.02)
Passed bias filter:                      384  (0.0214178); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.47u 0.23s 00:00:00.70 Elapsed: 00:00:00.39
# Mc/sec: 2932.88
//
Query:       KOO22324.1  [L=175]
Description: wd repeat-containing protein 61-like protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    6.4e-23   80.6   0.2    1.2e-07   32.3   0.2    4.1  4  WD40          WD domain, G-beta repeat
    1.7e-11   44.2   0.0     0.0053   17.0   0.0    3.2  3  ANAPC4_WD40   Anaphase-promoting complex subunit 4 WD40 domai
    0.00018   20.6   0.5       0.89    8.5   0.0    2.8  3  Ge1_WD40      WD40 region of Ge1, enhancer of mRNA-decapping 
    0.00033   21.0   1.0     0.0056   17.1   0.0    2.9  3  PQQ_3         PQQ-like domain
  ------ inclusion threshold ------
      0.015   14.7   0.0        0.8    9.0   0.0    2.1  2  CPSF_A        CPSF A subunit region
      0.031   12.6   0.0      0.033   12.5   0.0    1.2  1  Frtz          WD repeat-containing and planar cell polarity e
      0.035   14.1   0.2         66    3.8   0.0    3.7  3  NHL           NHL repeat
      0.048   13.4   0.5        9.7    6.1   0.1    2.5  2  TruB_C        tRNA Pseudouridine synthase II, C terminal
      0.062   11.8   0.2       0.42    9.1   0.1    1.8  3  Cytochrom_D1  Cytochrome D1 heme domain
       0.11   11.2   0.0       0.11   11.2   0.0    1.3  1  Nup160        Nucleoporin Nup120/160
       0.17   11.5   0.0       0.43   10.1   0.0    1.6  2  CNH           CNH domain


Domain annotation for each model (and alignments):
>> WD40  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.4   0.0    0.0026       4.3       6      34 ..      13      42 ..       7      46 .. 0.75
   2 !   24.9   0.0   1.6e-08   2.7e-05       5      37 ..      54      87 ..      50      88 .. 0.88
   3 !   32.3   0.2   7.4e-11   1.2e-07       4      38 .]      95     130 ..      92     130 .. 0.93
   4 !   10.4   0.0   0.00058      0.95       9      37 ..     143     173 ..     134     174 .. 0.79

  Alignments for each domain:
  == domain 1  score: 8.4 bits;  conditional E-value: 0.0026
                EEESSSS.EEEEEEETTSSEEEEEETTSEE CS
        WD40  6 tltGHss.vtslafspdgawlasGsdDgtv 34
                + tG +  v s+a  pdg+ +a+G+  g v
  KOO22324.1 13 VPTGANRfVMSVAMAPDGRHVACGTAEGGV 42
                456774459*************99766655 PP

  == domain 2  score: 24.9 bits;  conditional E-value: 1.6e-08
                EEEESS.SSEEEEEEETTSSEEEEEETTSEEEEE CS
        WD40  5 rtltGH.ssvtslafspdgawlasGsdDgtvriW 37
                + ++GH  +v++lafs dga l++G dD +v ++
  KOO22324.1 54 QRFEGHsANVRALAFSADGAHLITGADDAHVNLY 87
                4589**655*********************9987 PP

  == domain 3  score: 32.3 bits;  conditional E-value: 7.4e-11
                 EEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40   4 lrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 
                 + +  GH s+v ++a  pdg+ +as+s D++vriWd
  KOO22324.1  95 VASMPGHaSWVLGVAAAPDGSVIASCSADKSVRIWD 130
                 56788**999*************************9 PP

  == domain 4  score: 10.4 bits;  conditional E-value: 0.00058
                 SS.SSEEEEEEETTSSE.EEEEETTSEEEEE CS
        WD40   9 GH.ssvtslafspdgaw.lasGsdDgtvriW 37 
                 +H    +++af+p+++  l+s +dD+ +r++
  KOO22324.1 143 AHtEQAWGVAFDPNNPNrLVSVGDDKALRLY 173
                 77544799*********9777788*****98 PP

>> ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.0   0.0   3.2e-06    0.0053      24      79 ..       5      59 ..       2      62 .. 0.90
   2 !   16.4   0.0     5e-06    0.0081      35      78 ..      57     100 ..      49     105 .. 0.87
   3 !    9.8   0.0   0.00058      0.95      37      78 ..     101     142 ..      94     156 .. 0.81

  Alignments for each domain:
  == domain 1  score: 17.0 bits;  conditional E-value: 3.2e-06
  ANAPC4_WD40 24 lngqrvwtleedkedsevrsLaWkpdgklLavaysdgevrlldaesgkvvhslsvk 79
                 ++gqr++++  ++ ++ v s+a  pdg+  a ++++g v +ld+e + v + ++ +
   KOO22324.1  5 TSGQRLFSV-PTGANRFVMSVAMAPDGRHVACGTAEGGVYVLDVEAKLVTQRFEGH 59
                 589******.789999*****************************99888887765 PP

  == domain 2  score: 16.4 bits;  conditional E-value: 5e-06
  ANAPC4_WD40  35 dkedsevrsLaWkpdgklLavaysdgevrlldaesgkvvhslsv 78 
                  ++++ +vr+La++ dg  L  + +d +v+l++ ++g  v s++ 
   KOO22324.1  57 EGHSANVRALAFSADGAHLITGADDAHVNLYELSTGLQVASMPG 100
                  567899*****************************999888765 PP

  == domain 3  score: 9.8 bits;  conditional E-value: 0.00058
  ANAPC4_WD40  37 edsevrsLaWkpdgklLavaysdgevrlldaesgkvvhslsv 78 
                  + s v ++a  pdg+++a   +d +vr+ d+ + + ++ +  
   KOO22324.1 101 HASWVLGVAAAPDGSVIASCSADKSVRIWDVGTRQSLQVIAD 142
                  55667888889********************99988877654 PP

>> Ge1_WD40  WD40 region of Ge1, enhancer of mRNA-decapping protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.2   0.0     0.088   1.4e+02     189     214 ..      20      45 ..       8      55 .. 0.82
   2 !    8.4   0.0   0.00057      0.94     180     216 ..      52      89 ..      42      97 .. 0.84
   3 !    8.5   0.0   0.00055      0.89     188     218 ..     103     133 ..      90     144 .. 0.84

  Alignments for each domain:
  == domain 1  score: 1.2 bits;  conditional E-value: 0.088
    Ge1_WD40 189 liveaafspdGtalatasedGevkff 214
                  +++ a++pdG  +a  +++G v   
  KOO22324.1  20 FVMSVAMAPDGRHVACGTAEGGVYVL 45 
                 588999************99988665 PP

  == domain 2  score: 8.4 bits;  conditional E-value: 0.00057
    Ge1_WD40 180 gllkieehs.liveaafspdGtalatasedGevkffqv 216
                 ++ ++e hs ++   afs+dG+ l t + d  v ++ +
  KOO22324.1  52 VTQRFEGHSaNVRALAFSADGAHLITGADDAHVNLYEL 89 
                 455788898678888*******************9976 PP

  == domain 3  score: 8.5 bits;  conditional E-value: 0.00055
    Ge1_WD40 188 sliveaafspdGtalatasedGevkffqvyl 218
                 s +   a +pdG ++a +s+d  v+ + v  
  KOO22324.1 103 SWVLGVAAAPDGSVIASCSADKSVRIWDVGT 133
                 467888999******************9865 PP

>> PQQ_3  PQQ-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   0.0   3.4e-06    0.0056       1      39 [.       7      48 ..       7      48 .. 0.88
   2 ?    0.9   0.0      0.44   7.2e+02      18      33 ..      69      84 ..      55      91 .. 0.75
   3 ?   -1.2   0.0       1.9   3.1e+03      17      27 ..     109     119 ..      97     133 .. 0.60

  Alignments for each domain:
  == domain 1  score: 17.1 bits;  conditional E-value: 3.4e-06
       PQQ_3  1 GevlWsvqlpg.pvnsspav..dgglvyvgtgdGtlyAlDae 39
                G++l sv++++ + + s+a+  dg++v +gt  G++y lD e
  KOO22324.1  7 GQRLFSVPTGAnRFVMSVAMapDGRHVACGTAEGGVYVLDVE 48
                889999****99999999773369****************75 PP

  == domain 2  score: 0.9 bits;  conditional E-value: 0.44
       PQQ_3 18 avdgglvyvgtgdGtl 33
                 +dg ++ +g++d ++
  KOO22324.1 69 SADGAHLITGADDAHV 84
                5689999999999887 PP

  == domain 3  score: -1.2 bits;  conditional E-value: 1.9
       PQQ_3  17 pavdgglvyvg 27 
                 +a+ +g v ++
  KOO22324.1 109 AAAPDGSVIAS 119
                 34445555555 PP

>> CPSF_A  CPSF A subunit region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.8   0.0     0.018        30     175     208 ..      19      51 ..      15      95 .. 0.87
   2 ?    9.0   0.0   0.00049       0.8     120     173 ..     114     169 ..     107     172 .. 0.91

  Alignments for each domain:
  == domain 1  score: 3.8 bits;  conditional E-value: 0.018
                 --EEEEEEE--SSSEEEEEETTSEEEEEE--TTS CS
      CPSF_A 175 rwvtaaeflvdgedtvlvaDkfgnlfvlrydpea 208
                 r v+++++ +dg + v+++ ++g + vl ++ + 
  KOO22324.1  19 RFVMSVAMAPDG-RHVACGTAEGGVYVLDVEAKL 51 
                 7799*****999.9**************998664 PP

  == domain 2  score: 9.0 bits;  conditional E-value: 0.00049
                 S-EEEEEEEE-SS-EEEEEEETTEEEEEESS.S-EEEEEE-S.SS--EEEEEEESS CS
      CPSF_A 120 ktLlrkafldtqlyvvslkvlgnriivgDlm.kSvtfveyde.enyklilfardtq 173
                 +++++ ++ d+++ + ++ + +++ +++D++ + ++ v +d   +++l+ +++d  
  KOO22324.1 114 GSVIASCSADKSVRIWDVGTRQSLQVIADAHtEQAWGVAFDPnNPNRLVSVGDDKA 169
                 568999************************9899*********8889******965 PP

>> Frtz  WD repeat-containing and planar cell polarity effector protein Fritz
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0     2e-05     0.033     260     329 ..      61     132 ..      19     148 .. 0.86

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 2e-05
        Frtz 260 aqvislafnpdedkLllGceDssviLydeer..kitklvkaevvPsliswhpdsaillvasergelqifDla 329
                 a+v +laf+ d   L+ G+ D  v Ly+ ++  +++ +   +     ++  pd++++  +s+   ++i+D+ 
  KOO22324.1  61 ANVRALAFSADGAHLITGADDAHVNLYELSTglQVASMPGHASWVLGVAAAPDGSVIASCSADKSVRIWDVG 132
                 788999**********************87511566676666666678889*******************86 PP

>> NHL  NHL repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.0   0.0     0.073   1.2e+02      12      25 ..      39      52 ..      33      54 .. 0.79
   2 ?    3.8   0.0      0.04        66       6      27 ..     107     128 ..     104     129 .. 0.86
   3 ?    3.0   0.0     0.075   1.2e+02       3      13 ..     147     157 ..     145     157 .. 0.86

  Alignments for each domain:
  == domain 1  score: 3.0 bits;  conditional E-value: 0.073
                TTEEEEEECCCTEE CS
         NHL 12 nGdiyVaDsenhrv 25
                 G +yV D e   v
  KOO22324.1 39 EGGVYVLDVEAKLV 52
                799*****986655 PP

  == domain 2  score: 3.8 bits;  conditional E-value: 0.04
                 EEEEETTTEEEEEECCCTEEEE CS
         NHL   6 GvavdsnGdiyVaDsenhrvqv 27 
                 Gva+ ++G ++ ++s   +v++
  KOO22324.1 107 GVAAAPDGSVIASCSADKSVRI 128
                 9**********99998888776 PP

  == domain 3  score: 3.0 bits;  conditional E-value: 0.075
                 SEEEEEEETTT CS
         NHL   3 yPhGvavdsnG 13 
                 +++Gva d+n+
  KOO22324.1 147 QAWGVAFDPNN 157
                 78******886 PP

>> TruB_C  tRNA Pseudouridine synthase II, C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.0   0.1     0.012        20      31      42 ..      25      36 ..      22      42 .. 0.80
   2 ?    6.1   0.1     0.006       9.7      31      44 ..     109     122 ..     106     127 .. 0.82

  Alignments for each domain:
  == domain 1  score: 5.0 bits;  conditional E-value: 0.012
                EE-TTS-EEEEE CS
      TruB_C 31 aiaPdGrliALl 42
                a+aPdGr +A  
  KOO22324.1 25 AMAPDGRHVACG 36
                89*******965 PP

  == domain 2  score: 6.1 bits;  conditional E-value: 0.006
                 EE-TTS-EEEEEEE CS
      TruB_C  31 aiaPdGrliALlee 44 
                 a aPdG++iA + +
  KOO22324.1 109 AAAPDGSVIASCSA 122
                 679*******8755 PP

>> Cytochrom_D1  Cytochrome D1 heme domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.0   0.0   0.00055      0.89      39      95 ..      22      79 ..       6      84 .. 0.85
   2 ?    9.1   0.1   0.00026      0.42      13      72 ..      38      97 ..      32     147 .. 0.81
   3 ?    0.1   0.0      0.14   2.3e+02     293     337 ..     124     168 ..      92     174 .. 0.58

  Alignments for each domain:
  == domain 1  score: 8.0 bits;  conditional E-value: 0.00055
                  EEEE-TT.SSEEEEEETTSEEEEEESSSSSEEEEEE.-SSEEEEEEE--TTSEEEEEE CS
  Cytochrom_D1 39 isrvfasdgRyvyvigRDgkvtliDLwakeivaevk.iGlnarsvavSqddryvivgn 95
                  +s+  a+dgR+v   + +g+v ++D+ ak + ++ +    n r +a S d+ ++i+g+
    KOO22324.1 22 MSVAMAPDGRHVACGTAEGGVYVLDVEAKLVTQRFEgHSANVRALAFSADGAHLITGA 79
                  68899*********************99998888762567999********9999986 PP

  == domain 2  score: 9.1 bits;  conditional E-value: 0.00026
                  GGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT.SSEEEEEETTSEEEEEESSSSSEEEE CS
  Cytochrom_D1 13 dagkvalldgdskeilavletgyalHisrvfasdgRyvyvigRDgkvtliDLwakeivae 72
                  ++g v +ld ++k  ++++e++ a   +  f+ dg ++ + + D++v+l++L +   va 
    KOO22324.1 38 AEGGVYVLDVEAKLVTQRFEGHSANVRALAFSADGAHLITGADDAHVNLYELSTGLQVAS 97
                  7899*********************99***********************9987666655 PP

  == domain 3  score: 0.1 bits;  conditional E-value: 0.14
                   T-EEEEETTBT-EEE-HHHHHT--EEEEEE-TTSSEEEEEEE--S CS
  Cytochrom_D1 293 dsvaviDkktlekvltlaesaglkvvhvEfnkdGdevwlSvwdgk 337
                   +sv ++D  t +  + +a+    ++  v f  +  + ++Sv d k
    KOO22324.1 124 KSVRIWDVGTRQSLQVIADAHTEQAWGVAFDPNNPNRLVSVGDDK 168
                   445555555555555555555555555555555555555555544 PP

>> Nup160  Nucleoporin Nup120/160
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   6.5e-05      0.11     223     256 ..     106     141 ..      16     164 .. 0.88

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 6.5e-05
                 T......TTTEEEEEETT-EEEEEETTTTEEEEE.E CS
      Nup160 223 vavvei.gqtylfalsrdgkLrvWnlltgkclat.i 256
                  +v+ + + +++++ s d+ +r+W++ t + l +  
  KOO22324.1 106 LGVAAApDGSVIASCSADKSVRIWDVGTRQSLQViA 141
                 45555568899*******************999844 PP

>> CNH  CNH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.0   0.00026      0.43       3      64 ..      26      90 ..      24      97 .. 0.81
   2 ?   -1.9   0.0       1.2     2e+03     246     265 ..     123     142 ..     116     145 .. 0.87

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.00026
         CNH  3 pitggqrlllG.teeGlyllnlsdeskpvkieklss.vtqlaVleelnlllllsd.kqLyvydls 64
                +  +g++++ G +e G+y+l+++ ++  ++ e+ s  v+ la  ++   l++ +d +++ +y ls
  KOO22324.1 26 MAPDGRHVACGtAEGGVYVLDVEAKLVTQRFEGHSAnVRALAFSADGAHLITGADdAHVNLYELS 90
                66799******77889******8888888888777789999999988888888777888888776 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 1.2
         CNH 246 knfieirsvetgelvqeisg 265
                 ++++ i++v t++ +q+i++
  KOO22324.1 123 DKSVRIWDVGTRQSLQVIAD 142
                 678999******99999987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (175 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       271  (0.0151152); expected 358.6 (0.02)
Passed bias filter:                      228  (0.0127168); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.41u 0.28s 00:00:00.69 Elapsed: 00:00:00.41
# Mc/sec: 1296.30
//
Query:       KOO22325.1  [L=271]
Description: hypothetical protein Ctob_008447 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (271 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       308  (0.0171789); expected 358.6 (0.02)
Passed bias filter:                      274  (0.0152825); expected 358.6 (0.02)
Passed Vit filter:                        12  (0.000669307); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.41u 0.23s 00:00:00.64 Elapsed: 00:00:00.39
# Mc/sec: 2083.36
//
Query:       KOO22326.1  [L=276]
Description: hypothetical protein Ctob_008448 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
     0.0019   17.8   0.0     0.0026   17.4   0.0    1.2  1  Methyltransf_22  Methyltransferase domain


Domain annotation for each model (and alignments):
>> Methyltransf_22  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.4   0.0   1.4e-07    0.0026      83     202 ..      93     214 ..      79     260 .. 0.65

  Alignments for each domain:
  == domain 1  score: 17.4 bits;  conditional E-value: 1.4e-07
  Methyltransf_22  83 kkeedclvysvGsnGdyqfedGlikelgeekceihvfdfGnfarsenke.....knihyhqw.Glassydkaytpklkskgeiltlqdtlkklg 170
                       k++ c+ ys+G++G  +f++ ++      +c +  fd+   + ++ ++       i  h + Gl++s+d a+ ++      +ltl+ ++   +
       KOO22326.1  93 PKKRACIAYSFGADGSSDFDNQMVA----ATCRVLSFDPLCCGAAHRVGpshdfIPIGLHWFdGLTDSDDPAHPNTTFP---VLTLNTIKTSYE 179
                      35899***************97754....45999999985555555544210222344454358888888777665554...599999999999 PP

  Methyltransf_22 171 hklrtidvlkidcekcewenykdwvevdi....rqi 202
                      h +  +  lk+   k ew+  k+ v++++     q+
       KOO22326.1 180 HPKVDVLRLKVAT-KHEWKVLKNLVNTGAltdiFQV 214
                      9543333345554.58*********98775433333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (276 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       294  (0.016398); expected 358.6 (0.02)
Passed bias filter:                      257  (0.0143343); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.24s 00:00:00.64 Elapsed: 00:00:00.38
# Mc/sec: 2168.56
//
Query:       KOO22327.1  [L=764]
Description: hypothetical protein Ctob_008449 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (764 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       383  (0.021362); expected 358.6 (0.02)
Passed bias filter:                      282  (0.0157287); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.57u 0.26s 00:00:00.83 Elapsed: 00:00:00.40
# Mc/sec: 5685.45
//
Query:       KOO22328.1  [L=1263]
Description: calcium calmodulin-dependent protein kinase type 1d, partial [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    7.6e-44  150.0   0.0    1.4e-43  149.1   0.0    1.4  1  Pkinase         Protein kinase domain
    2.3e-15   56.6   0.0    5.1e-15   55.5   0.0    1.6  1  Pkinase_Tyr     Protein tyrosine kinase
    1.9e-08   34.0   0.0    0.00019   20.8   0.0    2.6  2  Kinase-like     Kinase-like
    0.00019   20.4   0.0    0.00019   20.4   0.0    2.5  3  Pkinase_fungal  Fungal protein kinase
     0.0049   16.4   0.0       0.01   15.4   0.0    1.4  1  YrbL-PhoP_reg   PhoP regulatory network protein YrbL
  ------ inclusion threshold ------
      0.013   15.1   0.0      0.031   13.9   0.0    1.6  1  Choline_kinase  Choline/ethanolamine kinase
       0.39   11.0  11.5        3.3    8.0   0.2    5.4  5  XhlA            Haemolysin XhlA
        1.4    9.2   7.7         36    4.7   0.1    4.6  4  LST1            LST-1 protein


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  149.1   0.0   6.4e-47   1.4e-43       1     204 [.     955    1181 ..     955    1205 .. 0.92

  Alignments for each domain:
  == domain 1  score: 149.1 bits;  conditional E-value: 6.4e-47
                  EEEEEEEEEESSEEEEEEEETTTTEEEEEEEEECHCHCHHHH..HHHHHHHHHHHHHS.CTTB--EEEEEEESSEEEEEEE--TTEBHHHHHHHHSS CS
     Pkinase    1 yekleklGeGsfGkVykaveketgkivAvKkikkekakkkke..kkvlrEikilkklk.hpnivrlyevfeekdelylvleyveggeladllerkgs 94  
                  y ++  lGeG f+kVy++v+++tg+  A+K+++   + +++e  + + +E+  lk+    p+i+ l +v+ ++d +yl ++ v+g el+ ++e++g+
  KOO22328.1  955 YAVQDLLGEGRFSKVYSVVDEATGQVLALKELDMGAIVEDEEglEMLEAEVLALKRAGnAPHIILLHKVVASPDAIYLAMDRVPGRELFVVVEERGA 1051
                  567789*******************************999999999999******9999************************************** PP

                  --HHHHHHHHHHHHHHHHHHHHTTEE-SS-SGGGEEEETTTE....EEE-SGTTSEESSSSCS...BCTTTSCGGGS-HHHH.............TT CS
     Pkinase   95 lseeeakkiakqilegleylHskgiiHrDlKpeNiLidekge....lKitDFGlakelesssk...ltsfvgtseYlAPEvl.............ke 171 
                  l+ + ++++++q+l++l  l + g++HrD+KpeNi+++e++     l ++DFG a+ l  +     lt + g++eY APEvl             ++
  KOO22328.1 1052 LETSYVRHLMQQLLTALTALAEVGVVHRDVKPENIMVSEEETerphLTLIDFGYAALLGGGDApteLTGVAGSPEYAAPEVLswiaveagdageeEG 1148
                  **************************************65556888*************9988888999******************9999988777 PP

                  SCBSHHHHHHHHHHHHHHHHHSS-STTTSSHHH CS
     Pkinase  172 neyskkvDvWslGvilyelltgkppfsgekgke 204 
                  ++y++ +DvWs+Gv+ y ll+g+ p    ++ +
  KOO22328.1 1149 EPYDAGCDVWSVGVTAYVLLCGELPSDLPEEAT 1181
                  *************************98555544 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.5   0.0   2.3e-18   5.1e-15       4     206 ..     958    1174 ..     955    1192 .. 0.84

  Alignments for each domain:
  == domain 1  score: 55.5 bits;  conditional E-value: 2.3e-18
                   EEEEEEESSEEEEEEEEETTTTSSEEEEEEEEESTTSSHHH...HHHHHHHHHHHHTS.-BTTB--EEEEEESSSSEEEEEE--TTEBHHHHHHHT CS
  Pkinase_Tyr    4 gkklGeGafGkVvegtlkgekekkevkVavKtlkeeateee...keelleeakimkkl.khpnivkllgvctkeepllivteyvkgGdLlkfLrkk 95  
                   ++ lGeG+f+kV++   +     + +  a+K l+ +a  e+    e+l  e+  +k+  + p+i+ l+ v+ + + +++ ++ v+g +L   ++++
   KOO22328.1  958 QDLLGEGRFSKVYSVVDE----ATGQVLALKELDMGAIVEDeegLEMLEAEVLALKRAgNAPHIILLHKVVASPDAIYLAMDRVPGRELFVVVEER 1049
                   6789*********98777....888899*****8876433312266666799999***9******************************9999987 PP

                   CTTTSBHHHHHHHHHHHHHHHHHHHHTTEEEST-SGGGEEEEE....TTEEEE-STTTHEETTTSSEEEETTSSTSGGGGS-HHHHHHSE...... CS
  Pkinase_Tyr   96 ekekltlkdllsfalqvAkGmeyLeskklvHrdlaarNvLlse....nkvvkisDfGLardiekddeyvkkeeaklpvkWmapEslkekk...... 181 
                      +l+++ + ++++q+  ++  L++  +vHrd+   N+++se    + +  + DfG a  +   d  ++ ++   + ++ apE+l+         
   KOO22328.1 1050 --GALETSYVRHLMQQLLTALTALAEVGVVHRDVKPENIMVSEeeteRPHLTLIDFGYAALLGGGDAPTELTGVAGSPEYAAPEVLSWIAveagda 1143
                   ..9***************************************9555556899**********8888877777777777777777777665566777 PP

                   .......EEHHHHHHHHHHHHHHHHTTSSGTT CS
  Pkinase_Tyr  182 .......ftsksDvWsfGvllwEiftlgespy 206 
                          +    DvWs Gv+ + +++ ge p 
   KOO22328.1 1144 geeegepYDAGCDVWSVGVTAYVLLC-GELPS 1174
                   779*******************8887.77774 PP

>> Kinase-like  Kinase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.0   0.0   0.00017      0.38      16      81 ..     957    1015 ..     952    1032 .. 0.84
   2 !   20.8   0.0   8.5e-08   0.00019     137     260 ..    1048    1184 ..    1039    1198 .. 0.73

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.00017
  Kinase-like   16 rgellkkgdrsvvfevkdqetgeplavkvfllps.easkkdlerlkeqelairllrgknpeqAkdhl 81  
                   +++ll++g +s+v+ v d++tg+ la+k   + +    ++ le l+ ++la+++        A++  
   KOO22328.1  957 VQDLLGEGRFSKVYSVVDEATGQVLALKELDMGAiVEDEEGLEMLEAEVLALKR--------AGNAP 1015
                   56799*****************************8888999**********998........44444 PP

  == domain 2  score: 20.8 bits;  conditional E-value: 8.5e-08
  Kinase-like  137 thkkletiarlllTlqlirlaanLqakglvhgkftvdnllldekg....glmlggft..aLvragtkvvlseve....kgfaPpEllgsrgg.... 218 
                   ++  let     l  ql+     L + g+vh +++++n++  e+      l l +f+  aL   g+      +       +a pE+l+  +     
   KOO22328.1 1048 ERGALETSYVRHLMQQLLTALTALAEVGVVHRDVKPENIMVSEEEterpHLTLIDFGyaALLGGGDAPT-ELTGvagsPEYAAPEVLSWIAVeagd 1142
                   44445544333344778888899*****************98653222279999886336776666544.3333336667999**98743332234 PP

  Kinase-like  219 ytrknktkmthkldaWqlGlviyriwclklPltlateeakee 260 
                    ++++   +  + d+W +G+++y + c +lP +l++e  ke+
   KOO22328.1 1143 AGEEEGEPYDAGCDVWSVGVTAYVLLCGELPSDLPEEATKEA 1184
                   88889999***************************9998876 PP

>> Pkinase_fungal  Fungal protein kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.2   3.3       2.5   5.5e+03     178     248 ..     453     544 ..     436     643 .. 0.55
   2 ?   -3.3   0.3       1.3     3e+03     189     232 ..     747     801 ..     743     898 .. 0.53
   3 !   20.4   0.0   8.4e-08   0.00019     312     386 ..    1064    1133 ..    1043    1140 .. 0.81

  Alignments for each domain:
  == domain 1  score: -4.2 bits;  conditional E-value: 2.5
  Pkinase_fungal 178 sWrdaerksEaelLkkaeergvegvarlvahedveekdddiaeiRkgldvtka.ekfrskrkvvsssssqe......................l 248
                     +W  ++r +E e +  ae   +e +a    ++ v+e + + a +R +l+   + e+  + +++ +++ ++                       +
      KOO22328.1 453 VWSLQQRVTELEAMA-AEALTKEAMAA-SLQQRVTELEASLATARPHLQRVAElEAAARVASLNEERLQERlaelesaaaeereeaayalaelQ 544
                     577777777766553.22344444444.444555656666677777777666644444443333333333343332222222222222222221 PP

  == domain 2  score: -3.3 bits;  conditional E-value: 1.3
  Pkinase_fungal 189 elLkkaeergvegvarlvahedveekdddi.aeiRkgldvtka.e...........k 232
                     e L  a+e +ve+  r +a  +  ++dd++  +++++++  +a e           +
      KOO22328.1 747 EALLAATELAVEEAGRGMAASQ--QEDDSVlLDVQQDVQQGQAaEnavagsesgtnA 801
                     5555566666666666555555..456666666666666665532222222211110 PP

  == domain 3  score: 20.4 bits;  conditional E-value: 8.4e-08
  Pkinase_fungal  312 lrDaIkghrsLflkagiLHrDiSenNilitdskkegerkglLiDLDlakelsddssesgarertGTleFmaievl 386 
                      l   ++++  L  + g++HrD+  +Ni++ ++++ ++++  LiD+ +a  l+  ++  +     G +e+ a evl
      KOO22328.1 1064 L---LTALTALA-EVGVVHRDVKPENIMVSEEET-ERPHLTLIDFGYAALLGGGDAPTELTGVAGSPEYAAPEVL 1133
                      3...45667788.99***************6655.599***********99988888777778888888877777 PP

>> YrbL-PhoP_reg  PhoP regulatory network protein YrbL
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.0   4.5e-06      0.01     122     166 ..    1058    1102 ..    1049    1109 .. 0.87

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 4.5e-06
  YrbL-PhoP_reg  122 aelkeaLdefleelldnhivtndlsakNivvkknsegeeelvlvD 166 
                      +l ++L + l +l++  +v +d++++Ni+v ++++++ +l l+D
     KOO22328.1 1058 RHLMQQLLTALTALAEVGVVHRDVKPENIMVSEEETERPHLTLID 1102
                     56778888888999******************************9 PP

>> Choline_kinase  Choline/ethanolamine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.0   1.4e-05     0.031     144     175 ..    1073    1107 ..    1049    1109 .. 0.79

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 1.4e-05
                      -EEEE-S--SGGGEEE....-CTTEEEE--GTT-E CS
  Choline_kinase  144 pvvfcHnDlqegNill...nkeekklvlIDFEYag 175 
                      +v   H D+ ++Ni++   ++e+++l+lIDF Ya+
      KOO22328.1 1073 EVGVVHRDVKPENIMVseeETERPHLTLIDFGYAA 1107
                      47788***********777778899********97 PP

>> XhlA  Haemolysin XhlA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.2   0.2      0.55   1.2e+03       2      26 ..      84     110 ..      82     118 .. 0.47
   2 ?    1.4   0.3      0.17   3.7e+02      13      38 ..     336     361 ..     330     369 .. 0.83
   3 ?   -0.4   0.0      0.62   1.4e+03      16      33 ..     411     428 ..     401     445 .. 0.63
   4 ?    3.6   0.0     0.034        75      16      47 ..     435     466 ..     426     471 .. 0.91
   5 ?    8.0   0.2    0.0015       3.3       2      46 ..     480     527 ..     479     529 .. 0.94

  Alignments for each domain:
  == domain 1  score: -0.2 bits;  conditional E-value: 0.55
        XhlA   2 ikerlerietkldnlee..rvdkleek 26 
                 +++rl+ +e++    e+  +   +e+ 
  KOO22328.1  84 LEQRLVACEARMQRAEQerDALAVELE 110
                 345555555555555554333333444 PP

  == domain 2  score: 1.4 bits;  conditional E-value: 0.17
        XhlA  13 ldnleervdkleekaaeaeekiknle 38 
                  d l+er++ le   ++a+e+++ + 
  KOO22328.1 336 GDALKERMQALETARRRAQEEADAMA 361
                 588999*************9998765 PP

  == domain 3  score: -0.4 bits;  conditional E-value: 0.62
        XhlA  16 leervdkleekaaeaeek 33 
                 l++rv++le  aaea ++
  KOO22328.1 411 LQQRVSELEGEAAEATKQ 428
                 667888888777766433 PP

  == domain 4  score: 3.6 bits;  conditional E-value: 0.034
        XhlA  16 leervdkleekaaeaeekiknleedlkklesn 47 
                 l++rv++le  +a+  +++ +l+ ++ +le++
  KOO22328.1 435 LQQRVTELEGVEATSFQSVWSLQQRVTELEAM 466
                 788**************************986 PP

  == domain 5  score: 8.0 bits;  conditional E-value: 0.0015
        XhlA   2 ikerlerietkldnlee...rvdkleekaaeaeekiknleedlkkles 46 
                 +++r++++e+ l +      rv +le  a+ a  + + l+e+l++les
  KOO22328.1 480 LQQRVTELEASLATARPhlqRVAELEAAARVASLNEERLQERLAELES 527
                 689**********9998889**************************97 PP

>> LST1  LST-1 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.7   0.1     0.016        36      18      46 ..     410     438 ..     405     451 .. 0.87
   2 ?    3.4   0.1     0.043        96      18      45 ..     455     482 ..     448     495 .. 0.87
   3 ?    1.3   0.1      0.19   4.3e+02      16      54 ..     540     577 ..     536     589 .. 0.70
   4 ?   -0.7   0.0      0.81   1.8e+03      18      52 ..     590     623 ..     584     632 .. 0.67

  Alignments for each domain:
  == domain 1  score: 4.7 bits;  conditional E-value: 0.016
        LST1  18 rlhrrvkrlerswaqvseqelhyaslqrl 46 
                  l++rv  le + a +++q    aslq+ 
  KOO22328.1 410 SLQQRVSELEGEAAEATKQKALAASLQQR 438
                 699***********************974 PP

  == domain 2  score: 3.4 bits;  conditional E-value: 0.043
        LST1  18 rlhrrvkrlerswaqvseqelhyaslqr 45 
                  l++rv+ le   a +  +e   aslq+
  KOO22328.1 455 SLQQRVTELEAMAAEALTKEAMAASLQQ 482
                 699*********9*************97 PP

  == domain 3  score: 1.3 bits;  conditional E-value: 0.19
        LST1  16 lCrlhrrvkrlerswaqvseqelhyaslqrlPvsssevp 54 
                 l  l+++v  le s a +s +e+  a+++r  v+s e +
  KOO22328.1 540 LAELQQQVASLEASAAEAS-KEVAAAAVLRQQVASLEAS 577
                 78999*********66655.5666666666666666554 PP

  == domain 4  score: -0.7 bits;  conditional E-value: 0.81
        LST1  18 rlhrrvkrlerswaqvseqelhyaslqrlPvssse 52 
                  l+++v  le s a +s +e+  a+++r  v+s e
  KOO22328.1 590 VLRQQVASLEASAAEAS-KEVAAAAVLRQQVASLE 623
                 58899999999966555.45555655565555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1263 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2089  (0.116515); expected 358.6 (0.02)
Passed bias filter:                      469  (0.0261587); expected 358.6 (0.02)
Passed Vit filter:                       100  (0.00557756); expected 17.9 (0.001)
Passed Fwd filter:                        45  (0.0025099); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 1.59u 0.36s 00:00:01.95 Elapsed: 00:00:00.58
# Mc/sec: 6599.02
//
Query:       KOO22329.1  [L=590]
Description: hypothetical protein Ctob_000740 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (590 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       260  (0.0145016); expected 358.6 (0.02)
Passed bias filter:                      208  (0.0116013); expected 358.6 (0.02)
Passed Vit filter:                        11  (0.000613531); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.52u 0.25s 00:00:00.77 Elapsed: 00:00:00.42
# Mc/sec: 4190.13
//
Query:       KOO22330.1  [L=359]
Description: hypothetical protein Ctob_000725, partial [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      4e-64  213.1  59.8    4.1e-14   52.9   4.3    6.4  6  VCBS             Repeat domain in Vibrio, Colwellia, Bradyrhi
    3.8e-36  122.8  70.9    2.7e-05   24.2   3.6    7.4  7  FG-GAP           FG-GAP repeat
    1.7e-06   28.1  22.9        5.3    7.3   0.0    7.2  7  Dockerin_1       Dockerin type I domain
    2.8e-06   26.8  25.5        2.7    7.3   0.1    7.1  7  TcdB_toxin_midN  Insecticide toxin TcdB middle/N-terminal reg
    1.2e-05   25.2   0.0         25    5.0   0.0    6.2  7  HET-s_218-289    Het-s 218-289
    0.00063   19.3   0.3         68    2.8   0.0    6.0  7  BBS1             Ciliary BBSome complex subunit 1
    0.00082   19.4   0.1         24    5.1   0.0    5.3  7  TM_PBP2_N        N-terminal of TM subunit in PBP-dependent AB
     0.0075   15.7  30.0         19    5.1   0.2    7.1  7  EF-hand_1        EF hand
  ------ inclusion threshold ------
      0.063   12.8  45.2          8    6.2   0.7    7.2  7  EF-hand_5        EF hand


Domain annotation for each model (and alignments):
>> VCBS  Repeat domain in Vibrio, Colwellia, Bradyrhizobium and Shewanella
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.9   4.3     2e-17   4.1e-14       1      60 [.      15      74 ..      15      75 .. 0.89
   2 !   47.9   6.0   7.5e-16   1.5e-12       1      60 [.      64     122 ..      64     123 .. 0.89
   3 !   47.0   4.8   1.5e-15   2.9e-12       1      60 [.     112     171 ..     112     172 .. 0.88
   4 !   50.0   4.0   1.6e-16   3.2e-13       1      60 [.     161     220 ..     161     221 .. 0.86
   5 !   32.1   0.2   6.6e-11   1.3e-07      13      60 ..     225     271 ..     222     272 .. 0.80
   6 !   47.8   4.0     8e-16   1.6e-12       1      60 [.     261     318 ..     261     319 .. 0.91

  Alignments for each domain:
  == domain 1  score: 52.9 bits;  conditional E-value: 2e-17
        VCBS  1 DldgDGrlDlvvan.dgglrvyrnngdGtftdvtktslggsgggt.gvavgDlDgDGdlDll 60
                D+dgDG+lD++++n +++ rv++n g Gtf  +t+++l+g+ +gt ++a++D+DgDGdlD+l
  KOO22330.1 15 DVDGDGDLDVLLGNaNSPSRVLLNAGGGTF--PTSIELPGGSAGTrSIAAADIDGDGDLDVL 74
                9************98999*******88876..789988885555549*************98 PP

  == domain 2  score: 47.9 bits;  conditional E-value: 7.5e-16
        VCBS   1 DldgDGrlDlvvandgglrvyrnngdGtftdvtktslggsgggt.gvavgDlDgDGdlDll 60 
                 D+dgDG+lD++++n+g  rv++n g G+f  +t+++l+g+ ++t ++a++D+DgDGdlD+l
  KOO22330.1  64 DIDGDGDLDVLLGNYGISRVLLNAGGGSF--PTSIELPGGSAYTnSIAAADVDGDGDLDVL 122
                 9***********************88765..899999996666659*************98 PP

  == domain 3  score: 47.0 bits;  conditional E-value: 1.5e-15
        VCBS   1 DldgDGrlDlvvand.gglrvyrnngdGtftdvtktslggsgggt.gvavgDlDgDGdlDll 60 
                 D+dgDG+lD++++n+ ++ +v++n g G+  ++t+++l+g+ ++t ++a++D+DgDGdlD+l
  KOO22330.1 112 DVDGDGDLDVLLGNYlSPSQVLLNAGGGS--FPTSIELPGDSAYTnSIAAADVDGDGDLDVL 171
                 9*************8899******98876..5899999995555549*************98 PP

  == domain 4  score: 50.0 bits;  conditional E-value: 1.6e-16
        VCBS   1 DldgDGrlDlvvan.dgglrvyrnngdGtftdvtktslgg.sgggtgvavgDlDgDGdlDll 60 
                 D+dgDG+lD++++n   + rv++n g G+  ++t+++l+g + +++++a++D+DgDGdlD+l
  KOO22330.1 161 DVDGDGDLDVLLGNyGPPSRVLLNAGGGS--FPTSIELPGgYATAFSIAAADVDGDGDLDVL 220
                 9*************4577******98876..589998888466666**************98 PP

  == domain 5  score: 32.1 bits;  conditional E-value: 6.6e-11
        VCBS  13 andgglrvyrnngdGtftdvtktslggsgggt.gvavgDlDgDGdlDll 60 
                 +++++ rv++n g Gtf  +t+++l+g+ ++t ++a++D+DgDGdlD+l
  KOO22330.1 225 GSNSPSRVLLNAGRGTF--PTSIALPGGSASTySIAAADVDGDGDLDVL 271
                 5688899****977765..78888888555555**************98 PP

  == domain 6  score: 47.8 bits;  conditional E-value: 8e-16
        VCBS   1 DldgDGrlDlvvand.gglrvyrnngdGtftdvtktslggsgggtgvavgDlDgDGdlDll 60 
                 D+dgDG+lD++++n+ ++ rv++n gdGtf  +t+++lg +   +++a++D+DgDGdlD+l
  KOO22330.1 261 DVDGDGDLDVLLGNSlSQSRVLLNAGDGTF--PTSIELGIA-STYSIAAADVDGDGDLDVL 318
                 9*************77*********99987..788888887.4679*************98 PP

>> FG-GAP  FG-GAP repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.2   3.6   1.3e-08   2.7e-05       2      27 ..       8      32 ..       7      43 .. 0.80
   2 !   21.0   3.7   1.4e-07   0.00027       3      27 ..      58      78 ..      56      92 .. 0.86
   3 !   22.6   3.3   4.4e-08   8.8e-05       3      28 ..     106     127 ..     104     140 .. 0.81
   4 !   22.4   3.7     5e-08    0.0001       3      23 ..     155     177 ..     153     189 .. 0.80
   5 !   22.6   2.3   4.2e-08   8.4e-05       3      30 ..     204     227 ..     202     239 .. 0.80
   6 !   23.3   3.2   2.6e-08   5.2e-05       2      22 ..     254     274 ..     253     288 .. 0.87
   7 !   23.8   4.3   1.7e-08   3.5e-05       2      31 ..     301     326 ..     300     332 .. 0.89

  Alignments for each domain:
  == domain 1  score: 24.2 bits;  conditional E-value: 1.3e-08
                TSSEEEESTSSSSS-EEEEEETT-ET CS
      FG-GAP  2 GyslavgDvNGDGyaDLavGApeskg 27
                 ys+a++Dv+GDG  D+++G  ++++
  KOO22330.1  8 TYSIAAADVDGDGDLDVLLGN-ANSP 32
                69******************4.2333 PP

  == domain 2  score: 21.0 bits;  conditional E-value: 1.4e-07
                SSEEEESTSSSSS-EEEEEETT-ET CS
      FG-GAP  3 yslavgDvNGDGyaDLavGApeskg 27
                 s+a++D++GDG  D+++G    ++
  KOO22330.1 58 RSIAAADIDGDGDLDVLLG----NY 78
                699****************....44 PP

  == domain 3  score: 22.6 bits;  conditional E-value: 4.4e-08
                 SSEEEESTSSSSS-EEEEEETT-ETC CS
      FG-GAP   3 yslavgDvNGDGyaDLavGApeskgg 28 
                 +s+a++Dv+GDG  D+++G    +++
  KOO22330.1 106 NSIAAADVDGDGDLDVLLG----NYL 127
                 79*****************....444 PP

  == domain 4  score: 22.4 bits;  conditional E-value: 5e-08
                 SSEEEESTSSSSS-EEEEEE..T CS
      FG-GAP   3 yslavgDvNGDGyaDLavGA..p 23 
                 +s+a++Dv+GDG  D+++G   p
  KOO22330.1 155 NSIAAADVDGDGDLDVLLGNygP 177
                 79*****************5442 PP

  == domain 5  score: 22.6 bits;  conditional E-value: 4.2e-08
                 SSEEEESTSSSSS-EEEEEETT-ETCST CS
      FG-GAP   3 yslavgDvNGDGyaDLavGApeskggay 30 
                  s+a++Dv+GDG  D+++G     +g++
  KOO22330.1 204 FSIAAADVDGDGDLDVLLGI----YGSN 227
                 599****************4....4443 PP

  == domain 6  score: 23.3 bits;  conditional E-value: 2.6e-08
                 TSSEEEESTSSSSS-EEEEEE CS
      FG-GAP   2 GyslavgDvNGDGyaDLavGA 22 
                  ys+a++Dv+GDG  D+++G 
  KOO22330.1 254 TYSIAAADVDGDGDLDVLLGN 274
                 69******************3 PP

  == domain 7  score: 23.8 bits;  conditional E-value: 1.7e-08
                 TSSEEEESTSSSSS-EEEEEETT-ETCSTT CS
      FG-GAP   2 GyslavgDvNGDGyaDLavGApeskggayg 31 
                  ys+a++Dv+GDG  D+++G    ++++++
  KOO22330.1 301 TYSIAAADVDGDGDLDVLLG----NYLDND 326
                 69******************....777765 PP

>> Dockerin_1  Dockerin type I domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.3   0.1     0.012        23      33      46 ..      10      23 ..       2      25 .. 0.79
   2 ?    4.2   0.0     0.025        49      29      46 ..      55      72 ..      37      74 .. 0.82
   3 !    5.8   0.5    0.0078        15      30      46 ..     104     120 ..      80     123 .. 0.81
   4 ?    4.7   5.0     0.017        35       2      46 ..     111     169 ..     110     171 .. 0.82
   5 ?    4.5   0.2      0.02        39      35      46 ..     207     218 ..     198     220 .. 0.82
   6 !    7.3   0.0    0.0026       5.3      26      46 ..     249     269 ..     231     271 .. 0.83
   7 !    6.0   0.1    0.0069        14      30      46 ..     300     316 ..     293     318 .. 0.80

  Alignments for each domain:
  == domain 1  score: 5.3 bits;  conditional E-value: 0.012
                CHGGGSTT-SSCES CS
  Dockerin_1 33 ngkaaDvNgDGrvn 46
                  +aaDv+gDG  +
  KOO22330.1 10 SIAAADVDGDGDLD 23
                67899*****9765 PP

  == domain 2  score: 4.2 bits;  conditional E-value: 0.025
                TSCCCHGGGSTT-SSCES CS
  Dockerin_1 29 ssssngkaaDvNgDGrvn 46
                  +   +aaD++gDG  +
  KOO22330.1 55 AGTRSIAAADIDGDGDLD 72
                55667899*******865 PP

  == domain 3  score: 5.8 bits;  conditional E-value: 0.0078
                 SCCCHGGGSTT-SSCES CS
  Dockerin_1  30 sssngkaaDvNgDGrvn 46 
                  ++  +aaDv+gDG  +
  KOO22330.1 104 YTNSIAAADVDGDGDLD 120
                 5677899*******865 PP

  == domain 4  score: 4.7 bits;  conditional E-value: 0.017
                 TETTSSSC-SHHHHHHHHHHCT..................SSEBTTSCCCHGGGSTT-SSCES CS
  Dockerin_1   2 gDVNgDgkVnalDalliinyln..................qregqssssngkaaDvNgDGrvn 46 
                 +DV+gDg  +   + l+ nyl                     +++  ++  +aaDv+gDG  +
  KOO22330.1 111 ADVDGDGDLD---V-LLGNYLSpsqvllnagggsfptsieLPGDSAYTNSIAAADVDGDGDLD 169
                 6888888655...3.478999999999999999999999888888999999*********865 PP

  == domain 5  score: 4.5 bits;  conditional E-value: 0.02
                 GGGSTT-SSCES CS
  Dockerin_1  35 kaaDvNgDGrvn 46 
                 +aaDv+gDG  +
  KOO22330.1 207 AAADVDGDGDLD 218
                 789999999765 PP

  == domain 6  score: 7.3 bits;  conditional E-value: 0.0026
                 EBTTSCCCHGGGSTT-SSCES CS
  Dockerin_1  26 egqssssngkaaDvNgDGrvn 46 
                 +g+ s+   +aaDv+gDG  +
  KOO22330.1 249 GGSASTYSIAAADVDGDGDLD 269
                 5677888999********865 PP

  == domain 7  score: 6.0 bits;  conditional E-value: 0.0069
                 SCCCHGGGSTT-SSCES CS
  Dockerin_1  30 sssngkaaDvNgDGrvn 46 
                 s+   +aaDv+gDG  +
  KOO22330.1 300 STYSIAAADVDGDGDLD 316
                 5677899*******865 PP

>> TcdB_toxin_midN  Insecticide toxin TcdB middle/N-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.5   0.4      0.01        20      31      48 ..      11      28 ..       2      40 .. 0.80
   2 !    4.9   0.3    0.0073        15      29      46 ..      58      75 ..      37      82 .. 0.73
   3 !    5.4   0.1    0.0054        11      29      46 ..     106     123 ..      87     132 .. 0.72
   4 !    5.3   0.1    0.0058        11      27      46 ..     152     172 ..     135     180 .. 0.73
   5 !    6.9   0.2    0.0018       3.5      24      51 ..     199     226 ..     184     238 .. 0.76
   6 !    7.3   0.2    0.0014       2.7      15      51 ..     242     277 ..     234     287 .. 0.75
   7 !    7.3   0.1    0.0014       2.7      11      46 ..     287     319 ..     277     332 .. 0.78

  Alignments for each domain:
  == domain 1  score: 4.5 bits;  conditional E-value: 0.01
  TcdB_toxin_midN 31 lslaDldGdGladlvlti 48
                     + +aD+dGdG +d++l  
       KOO22330.1 11 IAAADVDGDGDLDVLLGN 28
                     679**********88755 PP

  == domain 2  score: 4.9 bits;  conditional E-value: 0.0073
  TcdB_toxin_midN 29 tnlslaDldGdGladlvl 46
                       + +aD+dGdG +d++l
       KOO22330.1 58 RSIAAADIDGDGDLDVLL 75
                     34679**********875 PP

  == domain 3  score: 5.4 bits;  conditional E-value: 0.0054
  TcdB_toxin_midN  29 tnlslaDldGdGladlvl 46 
                        + +aD+dGdG +d++l
       KOO22330.1 106 NSIAAADVDGDGDLDVLL 123
                      34689**********775 PP

  == domain 4  score: 5.3 bits;  conditional E-value: 0.0058
  TcdB_toxin_midN  27 edtn.lslaDldGdGladlvl 46 
                      + tn + +aD+dGdG +d++l
       KOO22330.1 152 AYTNsIAAADVDGDGDLDVLL 172
                      33332589**********875 PP

  == domain 5  score: 6.9 bits;  conditional E-value: 0.0018
  TcdB_toxin_midN  24 tsvedtnlslaDldGdGladlvltipsa 51 
                      ++     + +aD+dGdG +d++l i ++
       KOO22330.1 199 GYATAFSIAAADVDGDGDLDVLLGIYGS 226
                      5555666889**********99877655 PP

  == domain 6  score: 7.3 bits;  conditional E-value: 0.0014
  TcdB_toxin_midN  15 petirvgtstsvedtnlslaDldGdGladlvltipsa 51 
                      p++i     +s +   + +aD+dGdG +d++l  + +
       KOO22330.1 242 PTSIALPG-GSASTYSIAAADVDGDGDLDVLLGNSLS 277
                      55555444.6677778899**********98876655 PP

  == domain 7  score: 7.3 bits;  conditional E-value: 0.0014
  TcdB_toxin_midN  11 dfkkpetirvgtstsvedtnlslaDldGdGladlvl 46 
                      d + p++i+ g     +   + +aD+dGdG +d++l
       KOO22330.1 287 DGTFPTSIELGI---ASTYSIAAADVDGDGDLDVLL 319
                      667889999888...45556789**********765 PP

>> HET-s_218-289  Het-s 218-289
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.0   0.0      0.11   2.2e+02      10      29 ..      12      31 ..       8      40 .. 0.86
   2 ?    2.3   0.0     0.086   1.7e+02      10      31 ..      61      82 ..      57      91 .. 0.81
   3 ?    2.5   0.0     0.075   1.5e+02       9      29 ..     108     128 ..     103     138 .. 0.84
   4 ?    0.7   0.0      0.27   5.3e+02       9      26 ..     157     174 ..     152     175 .. 0.86
   5 ?   -2.4   0.0       2.6   5.2e+03      11      25 ..     208     222 ..     203     233 .. 0.71
   6 ?    5.0   0.0     0.013        25      10      31 ..     258     279 ..     254     289 .. 0.87
   7 ?    2.3   0.0     0.085   1.7e+02      10      33 ..     305     328 ..     299     349 .. 0.80

  Alignments for each domain:
  == domain 1  score: 2.0 bits;  conditional E-value: 0.11
                   XXXXXXXXXXXXXXXXXXXX CS
  HET-s_218-289 10 sakdikgeesarvrvGnefs 29
                    a+d+ g+++ +v +Gn  s
     KOO22330.1 12 AAADVDGDGDLDVLLGNANS 31
                   6999*************765 PP

  == domain 2  score: 2.3 bits;  conditional E-value: 0.086
                   XXXXXXXXXXXXXXXXXXXXXX CS
  HET-s_218-289 10 sakdikgeesarvrvGnefsee 31
                    a+di g+++ +v +Gn    +
     KOO22330.1 61 AAADIDGDGDLDVLLGNYGISR 82
                   699**************75555 PP

  == domain 3  score: 2.5 bits;  conditional E-value: 0.075
                    XXXXXXXXXXXXXXXXXXXXX CS
  HET-s_218-289   9 NsakdikgeesarvrvGnefs 29 
                      a+d+ g+++ +v +Gn  s
     KOO22330.1 108 IAAADVDGDGDLDVLLGNYLS 128
                    5699**************876 PP

  == domain 4  score: 0.7 bits;  conditional E-value: 0.27
                    XXXXXXXXXXXXXXXXXX CS
  HET-s_218-289   9 NsakdikgeesarvrvGn 26 
                      a+d+ g+++ +v +Gn
     KOO22330.1 157 IAAADVDGDGDLDVLLGN 174
                    5699999*******9999 PP

  == domain 5  score: -2.4 bits;  conditional E-value: 2.6
                    XXXXXXXXXXXXXXX CS
  HET-s_218-289  11 akdikgeesarvrvG 25 
                    a+d+ g+++ +v +G
     KOO22330.1 208 AADVDGDGDLDVLLG 222
                    677777777777666 PP

  == domain 6  score: 5.0 bits;  conditional E-value: 0.013
                    XXXXXXXXXXXXXXXXXXXXXX CS
  HET-s_218-289  10 sakdikgeesarvrvGnefsee 31 
                     a+d+ g+++ +v +Gn+ s++
     KOO22330.1 258 AAADVDGDGDLDVLLGNSLSQS 279
                    699***************9986 PP

  == domain 7  score: 2.3 bits;  conditional E-value: 0.085
                    XXXXXXXXXXXXXXXXXXXXXXXX CS
  HET-s_218-289  10 sakdikgeesarvrvGnefseeal 33 
                     a+d+ g+++ +v +Gn   ++a 
     KOO22330.1 305 AAADVDGDGDLDVLLGNYLDNDAS 328
                    699**************8766665 PP

>> BBS1  Ciliary BBSome complex subunit 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.9   0.0      0.12   2.5e+02      14      38 ..       6      30 ..       3      38 .. 0.85
   2 ?    0.9   0.0      0.13   2.5e+02      15      38 ..      56      79 ..      46      85 .. 0.85
   3 ?    2.2   0.0     0.052     1e+02      13      36 ..     102     125 ..      94     133 .. 0.86
   4 ?    2.8   0.0     0.034        68      13      38 ..     151     176 ..     144     182 .. 0.88
   5 ?    0.2   0.0      0.21   4.3e+02      14      39 ..     201     226 ..     193     237 .. 0.81
   6 ?   -0.4   0.0      0.32   6.4e+02      15      36 ..     253     274 ..     246     283 .. 0.82
   7 ?    0.8   0.0      0.14   2.7e+02      17      45 ..     302     330 ..     295     352 .. 0.84

  Alignments for each domain:
  == domain 1  score: 0.9 bits;  conditional E-value: 0.12
        BBS1 14 tlsscialaDlkgdgdvkLvvadlg 38
                +++ +ia aD+ gdgd  +++++++
  KOO22330.1  6 AYTYSIAAADVDGDGDLDVLLGNAN 30
                5677899**********99999876 PP

  == domain 2  score: 0.9 bits;  conditional E-value: 0.13
        BBS1 15 lsscialaDlkgdgdvkLvvadlg 38
                 +++ia aD+ gdgd  ++++++g
  KOO22330.1 56 GTRSIAAADIDGDGDLDVLLGNYG 79
                567899***********9999887 PP

  == domain 3  score: 2.2 bits;  conditional E-value: 0.052
        BBS1  13 ktlsscialaDlkgdgdvkLvvad 36 
                 ++++++ia aD+ gdgd  +++++
  KOO22330.1 102 SAYTNSIAAADVDGDGDLDVLLGN 125
                 68899************9998876 PP

  == domain 4  score: 2.8 bits;  conditional E-value: 0.034
        BBS1  13 ktlsscialaDlkgdgdvkLvvadlg 38 
                 ++++++ia aD+ gdgd  ++++++g
  KOO22330.1 151 SAYTNSIAAADVDGDGDLDVLLGNYG 176
                 57899*************99998876 PP

  == domain 5  score: 0.2 bits;  conditional E-value: 0.21
        BBS1  14 tlsscialaDlkgdgdvkLvvadlgt 39 
                 ++  +ia aD+ gdgd  ++++ +g+
  KOO22330.1 201 ATAFSIAAADVDGDGDLDVLLGIYGS 226
                 56668999********9999887774 PP

  == domain 6  score: -0.4 bits;  conditional E-value: 0.32
        BBS1  15 lsscialaDlkgdgdvkLvvad 36 
                  + +ia aD+ gdgd  +++++
  KOO22330.1 253 STYSIAAADVDGDGDLDVLLGN 274
                 5668999********9998876 PP

  == domain 7  score: 0.8 bits;  conditional E-value: 0.14
        BBS1  17 scialaDlkgdgdvkLvvadlgteeskkk 45 
                  +ia aD+ gdgd  ++++++ +++ ++ 
  KOO22330.1 302 YSIAAADVDGDGDLDVLLGNYLDNDASPS 330
                 57899**********99998877666655 PP

>> TM_PBP2_N  N-terminal of TM subunit in PBP-dependent ABC transporters
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.1   0.0     0.012        24      46      73 ..       2      29 ..       1      35 [. 0.89
   2 ?   -2.5   0.0         3   5.9e+03      52      70 ..      57      75 ..      49      80 .. 0.76
   3 ?    3.3   0.0     0.047        93      44      70 ..      97     123 ..      93     128 .. 0.89
   4 ?    2.4   0.0     0.087   1.7e+02      45      71 ..     147     173 ..     143     177 .. 0.88
   5 ?   -1.5   0.0       1.4   2.8e+03      46      70 ..     197     221 ..     193     223 .. 0.82
   6 ?   -0.3   0.0      0.62   1.2e+03      46      72 ..     248     274 ..     243     281 .. 0.82
   7 ?   -2.4   0.0       2.6   5.3e+03      53      71 ..     302     320 ..     299     327 .. 0.80

  Alignments for each domain:
  == domain 1  score: 5.1 bits;  conditional E-value: 0.012
   TM_PBP2_N 46 edskeYalsvatkgsettgdlvllltdp 73
                ++  +Y++s+a+ + + +gdl +ll ++
  KOO22330.1  2 PGGSAYTYSIAAADVDGDGDLDVLLGNA 29
                78899******************99776 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 3
   TM_PBP2_N 52 alsvatkgsettgdlvlll 70
                + s+a+ +++ +gdl +ll
  KOO22330.1 57 TRSIAAADIDGDGDLDVLL 75
                5578888899999999988 PP

  == domain 3  score: 3.3 bits;  conditional E-value: 0.047
   TM_PBP2_N  44 rvedskeYalsvatkgsettgdlvlll 70 
                 + ++  +Y+ s+a+ + + +gdl +ll
  KOO22330.1  97 ELPGGSAYTNSIAAADVDGDGDLDVLL 123
                 579999*****************9998 PP

  == domain 4  score: 2.4 bits;  conditional E-value: 0.087
   TM_PBP2_N  45 vedskeYalsvatkgsettgdlvlllt 71 
                  ++  +Y+ s+a+ + + +gdl +ll 
  KOO22330.1 147 LPGDSAYTNSIAAADVDGDGDLDVLLG 173
                 688899****************99985 PP

  == domain 5  score: -1.5 bits;  conditional E-value: 1.4
   TM_PBP2_N  46 edskeYalsvatkgsettgdlvlll 70 
                 ++  + a+s+a+ + + +gdl +ll
  KOO22330.1 197 PGGYATAFSIAAADVDGDGDLDVLL 221
                 666667899999999999**99987 PP

  == domain 6  score: -0.3 bits;  conditional E-value: 0.62
   TM_PBP2_N  46 edskeYalsvatkgsettgdlvllltd 72 
                 ++  + ++s+a+ + + +gdl +ll +
  KOO22330.1 248 PGGSASTYSIAAADVDGDGDLDVLLGN 274
                 6667778999999999*****999865 PP

  == domain 7  score: -2.4 bits;  conditional E-value: 2.6
   TM_PBP2_N  53 lsvatkgsettgdlvlllt 71 
                 +s+a+ + + +gdl +ll 
  KOO22330.1 302 YSIAAADVDGDGDLDVLLG 320
                 6788888899999999985 PP

>> EF-hand_1  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.9   0.2     0.011        22       7      18 ..      12      23 ..       9      24 .. 0.84
   2 ?    4.3   0.2     0.017        33       6      18 ..      60      72 ..      58      73 .. 0.84
   3 !    5.1   0.2    0.0097        19       6      18 ..     108     120 ..     105     121 .. 0.84
   4 !    5.1   0.2    0.0097        19       6      18 ..     157     169 ..     154     170 .. 0.84
   5 ?    4.8   0.3     0.012        23       7      18 ..     207     218 ..     204     219 .. 0.84
   6 ?    4.8   0.2     0.012        24       7      18 ..     258     269 ..     256     270 .. 0.84
   7 ?    4.8   0.2     0.012        24       7      18 ..     305     316 ..     303     317 .. 0.84

  Alignments for each domain:
  == domain 1  score: 4.9 bits;  conditional E-value: 0.011
                HHHTTTSSSEEE CS
   EF-hand_1  7 refDkDgdGkId 18
                + +D+DgdG +d
  KOO22330.1 12 AAADVDGDGDLD 23
                679******887 PP

  == domain 2  score: 4.3 bits;  conditional E-value: 0.017
                HHHHTTTSSSEEE CS
   EF-hand_1  6 FrefDkDgdGkId 18
                ++ +D DgdG +d
  KOO22330.1 60 IAAADIDGDGDLD 72
                5689******887 PP

  == domain 3  score: 5.1 bits;  conditional E-value: 0.0097
                 HHHHTTTSSSEEE CS
   EF-hand_1   6 FrefDkDgdGkId 18 
                 ++ +D+DgdG +d
  KOO22330.1 108 IAAADVDGDGDLD 120
                 6789******887 PP

  == domain 4  score: 5.1 bits;  conditional E-value: 0.0097
                 HHHHTTTSSSEEE CS
   EF-hand_1   6 FrefDkDgdGkId 18 
                 ++ +D+DgdG +d
  KOO22330.1 157 IAAADVDGDGDLD 169
                 6789******887 PP

  == domain 5  score: 4.8 bits;  conditional E-value: 0.012
                 HHHTTTSSSEEE CS
   EF-hand_1   7 refDkDgdGkId 18 
                 + +D+DgdG +d
  KOO22330.1 207 AAADVDGDGDLD 218
                 679******887 PP

  == domain 6  score: 4.8 bits;  conditional E-value: 0.012
                 HHHTTTSSSEEE CS
   EF-hand_1   7 refDkDgdGkId 18 
                 + +D+DgdG +d
  KOO22330.1 258 AAADVDGDGDLD 269
                 679******887 PP

  == domain 7  score: 4.8 bits;  conditional E-value: 0.012
                 HHHTTTSSSEEE CS
   EF-hand_1   7 refDkDgdGkId 18 
                 + +D+DgdG +d
  KOO22330.1 305 AAADVDGDGDLD 316
                 679******887 PP

>> EF-hand_5  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.2   0.7     0.004         8       7      17 ..      13      23 ..      10      24 .. 0.87
   2 ?    4.9   0.9    0.0097        19       7      17 ..      62      72 ..      58      73 .. 0.86
   3 ?    6.1   0.9     0.004         8       7      17 ..     110     120 ..     106     121 .. 0.86
   4 ?    6.1   0.9     0.004         8       7      17 ..     159     169 ..     155     170 .. 0.86
   5 ?    6.2   0.7     0.004         8       7      17 ..     208     218 ..     205     219 .. 0.87
   6 ?    6.2   0.7     0.004         8       7      17 ..     259     269 ..     256     270 .. 0.87
   7 ?    6.2   0.7     0.004         8       7      17 ..     306     316 ..     303     317 .. 0.87

  Alignments for each domain:
  == domain 1  score: 6.2 bits;  conditional E-value: 0.004
                HH-SS-SSCE- CS
   EF-hand_5  7 aiDlNgDGkIs 17
                a+D++gDG ++
  KOO22330.1 13 AADVDGDGDLD 23
                89******988 PP

  == domain 2  score: 4.9 bits;  conditional E-value: 0.0097
                HH-SS-SSCE- CS
   EF-hand_5  7 aiDlNgDGkIs 17
                a+D +gDG ++
  KOO22330.1 62 AADIDGDGDLD 72
                89******988 PP

  == domain 3  score: 6.1 bits;  conditional E-value: 0.004
                 HH-SS-SSCE- CS
   EF-hand_5   7 aiDlNgDGkIs 17 
                 a+D++gDG ++
  KOO22330.1 110 AADVDGDGDLD 120
                 89******988 PP

  == domain 4  score: 6.1 bits;  conditional E-value: 0.004
                 HH-SS-SSCE- CS
   EF-hand_5   7 aiDlNgDGkIs 17 
                 a+D++gDG ++
  KOO22330.1 159 AADVDGDGDLD 169
                 89******988 PP

  == domain 5  score: 6.2 bits;  conditional E-value: 0.004
                 HH-SS-SSCE- CS
   EF-hand_5   7 aiDlNgDGkIs 17 
                 a+D++gDG ++
  KOO22330.1 208 AADVDGDGDLD 218
                 89******988 PP

  == domain 6  score: 6.2 bits;  conditional E-value: 0.004
                 HH-SS-SSCE- CS
   EF-hand_5   7 aiDlNgDGkIs 17 
                 a+D++gDG ++
  KOO22330.1 259 AADVDGDGDLD 269
                 89******988 PP

  == domain 7  score: 6.2 bits;  conditional E-value: 0.004
                 HH-SS-SSCE- CS
   EF-hand_5   7 aiDlNgDGkIs 17 
                 a+D++gDG ++
  KOO22330.1 306 AADVDGDGDLD 316
                 89******988 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (359 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       134  (0.00747392); expected 358.6 (0.02)
Passed bias filter:                       91  (0.00507558); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.49u 0.22s 00:00:00.71 Elapsed: 00:00:00.43
# Mc/sec: 2518.82
//
Query:       KOO22331.1  [L=188]
Description: hypothetical protein Ctob_000741 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (188 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       255  (0.0142228); expected 358.6 (0.02)
Passed bias filter:                      229  (0.0127726); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.27s 00:00:00.65 Elapsed: 00:00:00.41
# Mc/sec: 1368.10
//
Query:       KOO22332.1  [L=290]
Description: dynein intermediate chain axonemal [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
  ------ inclusion threshold ------
      0.079   12.7   0.4      0.079   12.7   0.4    1.9  2  FTCD_C          Formiminotransferase-cyclodeaminase
       0.22   11.8   0.2       0.22   11.8   0.2    1.9  2  baeRF_family10  Bacterial archaeo-eukaryotic release factor f
       0.68   10.3   4.9       0.22   11.9   0.8    2.1  2  DUF1840         Domain of unknown function (DUF1840)


Domain annotation for each model (and alignments):
>> FTCD_C  Formiminotransferase-cyclodeaminase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.0   2.7       1.8   1.1e+04      84     105 ..     122     143 ..     118     146 .. 0.63
   2 ?   12.7   0.4   1.3e-05     0.079      76     142 ..     199     265 ..     196     271 .. 0.97

  Alignments for each domain:
  == domain 1  score: -4.0 bits;  conditional E-value: 1.8
                 TTT..........S-HHHHHHH CS
      FTCD_C  84 ayklpketeeekaareeaiqea 105
                 a k ++++++ekaa++++i+ a
  KOO22332.1 122 AKKQKEKEDDEKAAQARQIELA 143
                 4455566677777777777655 PP

  == domain 2  score: 12.7 bits;  conditional E-value: 1.3e-05
                 HHHHHHHTTTT..........S-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-GGGHHHH CS
      FTCD_C  76 eaFnevmeayklpketeeekaareeaiqealkkavevPlelarkalellelleelaekgnknavSDa 142
                 e ++++me ++ +ke e  k+++  a ++a+++a +   e + + +++ + ++ l +++n+n+ SD+
  KOO22332.1 199 EMYDAYMEDLERKKELEGKKSKKGGAPKKATNQAQQKGSEDVVHTAAMAHAAKILERMCNQNTFSDV 265
                 689***************************************************************8 PP

>> baeRF_family10  Bacterial archaeo-eukaryotic release factor family 10
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.2      0.73   4.3e+03      67      67 ..     141     141 ..     104     182 .. 0.55
   2 ?   11.8   0.2   3.7e-05      0.22      25      89 ..     197     262 ..     194     265 .. 0.87

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 0.73
  baeRF_family10  67 e 67 
                     e
      KOO22332.1 141 E 141
                     1 PP

  == domain 2  score: 11.8 bits;  conditional E-value: 3.7e-05
  baeRF_family10  25 raRlfevylgeleeveevegevpgrtktggwk....sqdrfqrreeeqaerhlkevAellaklleergv 89 
                     ++ ++  y+ +le  +e+eg+  +   +gg +    +q++++  e+    +++ ++A++l+++++++ +
      KOO22332.1 197 QWEMYDAYMEDLERKKELEGKKSK---KGGAPkkatNQAQQKGSEDVVHTAAMAHAAKILERMCNQNTF 262
                     788899999999999999999995...77777799999999999999999**************99987 PP

>> DUF1840  Domain of unknown function (DUF1840)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.8   3.6e-05      0.22      20      89 ..      82     168 ..      69     178 .. 0.80
   2 ?   -0.5   0.2      0.25   1.5e+03      76      77 ..     234     235 ..     197     270 .. 0.53

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 3.6e-05
     DUF1840  20 akqllkllgks..lterGaitaedlpaaiakLeaaiaaekaeeaeeeeeeeeeek...............eeekeeeeeevsLaqRa 89 
                 +k+l++  +k+  +++ G i+++++  a + +   +++++a++++e+e++e++++               + ++++ +++ ++++Ra
  KOO22332.1  82 QKTLIRFSHKEkcYKVDGTIEQAEVHFAQEGILLDVKSDEAKKQKEKEDDEKAAQarqielahqeggdggDGDETNLRNQFNFSERA 168
                 567777777777799***************************999999998877767777777666666655666666666666665 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 0.25
     DUF1840  76 ke 77 
                 ++
  KOO22332.1 234 QK 235
                 22 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (290 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1264  (0.0705003); expected 358.6 (0.02)
Passed bias filter:                      458  (0.0255452); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.48u 0.27s 00:00:00.75 Elapsed: 00:00:00.44
# Mc/sec: 1983.27
//
Query:       KOO22333.1  [L=468]
Description: apyrase-like protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    8.5e-56  189.4   0.0      9e-45  153.1   0.0    2.8  2  GDA1_CD39  GDA1/CD39 (nucleoside phosphatase) family


Domain annotation for each model (and alignments):
>> GDA1_CD39  GDA1/CD39 (nucleoside phosphatase) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  153.1   0.0     5e-49     9e-45       8     289 ..      33     332 ..      28     341 .. 0.73
   2 !   32.8   0.0   1.6e-12   2.9e-08     338     410 ..     326     399 ..     321     407 .. 0.77

  Alignments for each domain:
  == domain 1  score: 153.1 bits;  conditional E-value: 5e-49
   GDA1_CD39   8 ekygiviDAGSsgsrlhvykwkde..kesllqivkliee....vkklePGlSsfekkpeeaaeylkpllelaeeviPeekrsetpvlikATAGlRLlke 100
                 ++y++++D GS+g+r+hv+ w +      +++  + +        k++PG+Ssfe++peea++++ pl+elae+v+P+e++s t v++ ATAG+RL+  
  KOO22333.1  33 RSYAVIFDGGSTGTRVHVFSWLSGpqAGPTIDGLPDVRAepggHLKVKPGISSFESNPEEAGASILPLIELAERVVPREEHSRTLVMLRATAGMRLVSR 131
                 78*******************877443333343444444678899****************************************************** PP

   GDA1_CD39 101 ekkekilkalrnklkklsefkved.qgiriidGeeEGiYgWiaiNYllGkfnkeapevskqetvgvlDlGGaStQiafepq.......eesei.aekve 190
                  +++ +  +l + + + ++f ++  q+   + G+ EG++gW++ NYll + ++     ++   vg+lDlGG+StQi+ +           s+i  ++  
  KOO22333.1 132 RRAQRVYASLYEAVARRNTFTSTRrQHFGTLSGDDEGVFGWLSANYLLRRSGRI----PQMGAVGALDLGGGSTQITLQAPpslhldlR-SQIdPRHAG 225
                 ********************99988***********************988877....7899***************975532222111.222022222 PP

   GDA1_CD39 191 di.e.......elklqekledkkyklyvtsfLgyGanealrkklaklikkaseevlkdpClprglektvevkdle..........fkqfaikgtgnyeq 271
                 d  +       +   ++ l + +  ++++s+Lg+G n+   ++la+l + +       +Cl  g+++  e  +             +  +  g+g++++
  KOO22333.1 226 DSlArpstqrePSPPSVALPSGEVFVFTHSHLGFG-NK---AVLASLTEAEAA-----SCLAAGVNTSWEPCNRSrdyqrflqrgARPITLLGKGSFAH 315
                 221110000002233455667788899********.33...344555555444.....55555555555544444443333333344666778899999 PP

   GDA1_CD39 272 CrksikellnknakCkae 289
                 C + +++     a C+++
  KOO22333.1 316 CDAAVRRQAA-RALCEYD 332
                 9988887665.6666665 PP

  == domain 2  score: 32.8 bits;  conditional E-value: 1.6e-12
   GDA1_CD39 338 rkfCkknweeikaeskkskeksisee.eaCfkgayvlslLhdGfdldktveelqsvekiaekelgWtLGamlnl 410
                 r +C+ + + +++ + k    +++     Cf+++y   lL dG+ +d + + + +++++++ e++WtLGa ln 
  KOO22333.1 326 RALCEYDDARLRTLVGKDPLTTEDALmWRCFDLTYAARLLTDGYGFDPNAPVIDFMGDVDGVEVEWTLGALLNE 399
                 55555555555555444444444433578*****************************************9985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (468 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       351  (0.0195772); expected 358.6 (0.02)
Passed bias filter:                      276  (0.0153941); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.50u 0.26s 00:00:00.76 Elapsed: 00:00:00.41
# Mc/sec: 3385.89
//
Query:       KOO22334.1  [L=216]
Description: peptide methionine sulfoxide reductase-like protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.7e-56  190.0   0.1    3.7e-56  189.5   0.1    1.1  1  PMSR      Peptide methionine sulfoxide reductase


Domain annotation for each model (and alignments):
>> PMSR  Peptide methionine sulfoxide reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  189.5   0.1   2.1e-60   3.7e-56       2     148 ..      56     201 ..      55     205 .. 0.97

  Alignments for each domain:
  == domain 1  score: 189.5 bits;  conditional E-value: 2.1e-60
                 EEEE-S-HHHHHHHHCTSTTEEEEEEEEESSS-SS--HHHHHTTTT--EEEEEEEEETTTS-HHHHHHHHHHTS-TT-SSEETTEESGGG--EEEESSC CS
        PMSR   2 avlagGCFWgveklfeklkGvlstevGYagGktenptYeevcsgktghaEavevvydpekvsleellelffeihDptqlnrqgnDvGtqYrsaiyytne 100
                 +++a+GCFWgve +f +++Gv++tevGY+gG+t+nptY+++++g+t haE+v+v+ydpe vsle+l+++ff++hDpt++nrqgnDvGtqYrsai+y +e
  KOO22334.1  56 LYVAAGCFWGVELAFARVPGVVATEVGYVGGHTPNPTYRDISRGDTMHAETVKVTYDPELVSLETLFNVFFDVHDPTTKNRQGNDVGTQYRSAIFYRSE 154
                 699************************************************************************************************ PP

                 CHHHHHHHHHHHHHTTHTTSSS---EEEEG.-SEEE--CCCTTHHHH-T CS
        PMSR 101 eqkevaeevleelqkkkalkkkivteiepl.kefykaeeyHqqYleknp 148
                 + +++a++++e+ q +  l++k++t++e++ + f++ae+yHq Yl+k  
  KOO22334.1 155 AMRAAAHAAIEREQMR--LGGKVATTLEKIdGAFTPAEDYHQAYLAKGG 201
                 ************9999..**********99569************9965 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (216 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       272  (0.015171); expected 358.6 (0.02)
Passed bias filter:                      244  (0.0136092); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.24s 00:00:00.61 Elapsed: 00:00:00.38
# Mc/sec: 1726.69
//
Query:       KOO22335.1  [L=677]
Description: hypothetical protein Ctob_000730 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      1e-12   49.0   0.0    1.9e-12   48.1   0.0    1.5  1  Metallophos      Calcineurin-like phosphoesterase
    2.7e-10   40.7   0.3    2.7e-10   40.7   0.3    2.6  3  Pur_ac_phosph_N  Purple acid Phosphatase, N-terminal domain
    5.6e-09   36.7   0.0    1.8e-08   35.1   0.0    2.0  1  Metallophos_C    Iron/zinc purple acid phosphatase-like prote


Domain annotation for each model (and alignments):
>> Metallophos  Calcineurin-like phosphoesterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.1   0.0   3.2e-16   1.9e-12       2     203 ..     347     580 ..     346     581 .. 0.70

  Alignments for each domain:
  == domain 1  score: 48.1 bits;  conditional E-value: 3.2e-16
                  EEEEEESBTB..............TTCCTHHHHHHHHHHHHHHHTTESEEEEESTSSSSS....HHHHHHHHHHHHHHHHTSEEEEEC-TTSCHHHHH CS
  Metallophos   2 rilvigDlHl..............algggqlddllkllddllreekpdlvllaGDlvdrg....dlekellellaalvkypipvylllGNHegfeeel 81 
                  +++ +gD+ +              + g+g   ++++l  ++ + e  d+vl+ GDl +       ++  ++ ++ +++++ +p+++  GNHe +++ +
   KOO22335.1 347 TFAAFGDMSVtgytltydthkdtpDGGPGAVGTAQRLRARIDAGEPLDFVLHFGDLGYAKgaifLWDA-WMSMMGRVGSR-VPYMVSVGNHE-YDYRY 441
                  57778888888888888888899855555555555555555555566********8888778999999.99999999995.***********.88899 PP

                  HHHHHHHHHHHHHHEHHHCEE..ETSEEEEEETTE.EEEEEEESE..CEEE......THHHHHHHHHHHSCHHHHCC.HHHHHH...HHHHTTCSEEE CS
  Metallophos  82 lnkygylgifsepwrsdaevf..nnlplaslgsgs.lkvlllhGg..spel......lvsldklgslnleleapepg.dewlkd...lekrekadwvi 164
                  +++++ +g  ++++r+  ++f  +   l + g g+    + ++++     +      + s++ +   + +  ap +    +l+     ++r+ ++w++
   KOO22335.1 442 PSPNDPSGVSGGVHRDMPSWFdgDVDSLGECGVGTeR-RFRAPANgnK--IfwyafsTGSVSVVMLSSEHSVAPGSPqRAFLEGalaAVDRTLTPWLV 536
                  9999999988777777755552223333334444433.4444444242..22345553333333333333333333357888889999********** PP

                  EEESSESS..CSSSCSCCHHHHH...HHHHHTTESEEEEESSSS CS
  Metallophos 165 vlgHsply..rgsgylfgdeale...dllkkygvdlvisGHtHv 203
                  v +H+ +y  +g++++  d  l+   dl++ky+vdlv  GH+H+
   KOO22335.1 537 VTFHREVYslTGAEQPLQDGYLAwmeDLFYKYKVDLVANGHIHQ 580
                  ********997777777777777999*****************7 PP

>> Pur_ac_phosph_N  Purple acid Phosphatase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.6       1.1   6.5e+03       8      29 ..     122     142 ..     117     150 .. 0.70
   2 !   40.7   0.3   4.6e-14   2.7e-10       1      83 [.     224     326 ..     224     336 .. 0.81
   3 ?   -2.9   0.0       1.8   1.1e+04      14      25 ..     640     651 ..     637     658 .. 0.74

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 1.1
  Pur_ac_phosph_N   8 ltedtstsmtvsWitpektkks 29 
                      lt+ ++  +tv+W   + ++++
       KOO22335.1 122 LTS-DPANVTVTWKFETGAVNQ 142
                      455.788999999877655554 PP

  == domain 2  score: 40.7 bits;  conditional E-value: 4.6e-14
  Pur_ac_phosph_N   1 peqvhlslte.dtstsmtvsWitpektkks....vvrygtssdalestaeatsstyet...............tnyksgyshkatltgLepgtt 74 
                      p + h+++++ dt++sm+vs++t++++       +v +gt +++++++a+  +st+                  +++ g  h+at++gL+p+t+
       KOO22335.1 224 PFHTHVAYGGeDTQHSMIVSFTTNSSMYGDggyvSVMVGTVPGMYSFNATDIESTTYGaadlcnapanttsvdFWQWPGVFHHATIRGLAPSTR 317
                      677888886515899*********9553333555**********999998766554447************9999******************* PP

  Pur_ac_phosph_N  75 YyYrvgdde 83 
                      Yy r  ++e
       KOO22335.1 318 YYARAVAGE 326
                      **9987776 PP

  == domain 3  score: -2.9 bits;  conditional E-value: 1.8
  Pur_ac_phosph_N  14 tsmtvsWitpek 25 
                      t m+ +W+ +++
       KOO22335.1 640 THMRLTWTRNND 651
                      668888887765 PP

>> Metallophos_C  Iron/zinc purple acid phosphatase-like protein C
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.1   0.0   3.1e-12   1.8e-08       1      62 [.     596     656 ..     596     657 .. 0.89

  Alignments for each domain:
  == domain 1  score: 35.1 bits;  conditional E-value: 3.1e-12
  Metallophos_C   1 ApvhiviGaAGndeg.dafkgeppqpewsafrstdyGygrltvhNathLlwefvrssdgkviD 62 
                    Apv+i++G+AG+     a+++++    ws +   + G+  + ++N+th+++++ r++d+ v+D
     KOO22335.1 596 APVYIISGSAGAMLEpTAVNNKTGLVAWSGVG--SCGFYVVDALNCTHMRLTWTRNNDSAVLD 656
                    9**********999975555567789999876..68********************999***9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (677 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       462  (0.0257683); expected 358.6 (0.02)
Passed bias filter:                      353  (0.0196888); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.54u 0.22s 00:00:00.76 Elapsed: 00:00:00.37
# Mc/sec: 5542.85
//
Query:       KOO22336.1  [L=484]
Description: mbre tpr repeat protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.6e-28   97.7   4.9    7.2e-09   35.2   0.1    3.7  3  TPR_10    Tetratricopeptide repeat
    1.3e-25   89.5  10.9    2.8e-14   53.2   1.5    2.7  2  TPR_12    Tetratricopeptide repeat
    1.5e-09   37.3   0.5      0.026   14.7   0.0    3.6  3  TPR_8     Tetratricopeptide repeat
      3e-08   33.1   2.4      0.043   13.6   0.1    3.6  3  TPR_1     Tetratricopeptide repeat
    3.3e-07   29.9   4.8       0.27   11.5   0.1    3.8  3  TPR_2     Tetratricopeptide repeat
      9e-07   28.9   7.4        1.6    9.6   0.0    5.5  4  TPR_4     Tetratricopeptide repeat
    1.7e-06   27.7   3.6    3.9e-06   26.5   3.6    1.6  1  TPR_MalT  MalT-like TPR region
    1.6e-05   24.6   8.9     0.0012   18.8   0.2    4.1  4  TPR_7     Tetratricopeptide repeat
    0.00084   19.8   5.1      0.019   15.5   1.2    3.0  3  TPR_19    Tetratricopeptide repeat
     0.0024   18.5   1.1     0.0024   18.5   1.1    4.3  4  TPR_16    Tetratricopeptide repeat
     0.0026   18.4  15.9       0.48   11.4   0.5    4.9  3  TPR_14    Tetratricopeptide repeat
     0.0028   17.9   2.8        8.4    7.0   0.0    4.1  3  TPR_17    Tetratricopeptide repeat
     0.0032   17.7   0.7         12    6.3   0.0    3.8  4  Osmo_CC   Osmosensory transporter coiled coil
  ------ inclusion threshold ------
      0.026   14.5   0.0        5.1    7.2   0.0    2.7  2  TPR_3     Tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> TPR_10  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.0   0.1   1.1e-09   1.4e-06       5      42 .]     357     394 ..     353     394 .. 0.94
   2 !   35.2   0.1   5.6e-12   7.2e-09       1      41 [.     395     435 ..     395     436 .. 0.97
   3 !   35.0   0.1   6.8e-12   8.7e-09       1      36 [.     437     472 ..     437     480 .. 0.94

  Alignments for each domain:
  == domain 1  score: 28.0 bits;  conditional E-value: 1.1e-09
      TPR_10   5 lnNLanalrqrgrydeAealleealairrrllGpdHPd 42 
                 +  La +l+++g++deA  l+++al++ r++lG  HPd
  KOO22336.1 357 QDRLATLLQAQGKLDEAGVLFRDALEASRATLGGRHPD 394
                 678**********************************9 PP

  == domain 2  score: 35.2 bits;  conditional E-value: 5.6e-12
      TPR_10   1 tAsslnNLanalrqrgrydeAealleealairrrllGpdHP 41 
                 t+ s+nNL+ +l ++g++deA   l+eal++ r++lG+ HP
  KOO22336.1 395 TLISMNNLGGLLLAQGKLDEAGVVLREALEAKRATLGERHP 435
                 6789************************************9 PP

  == domain 3  score: 35.0 bits;  conditional E-value: 6.8e-12
      TPR_10   1 tAsslnNLanalrqrgrydeAealleealairrrll 36 
                 t++s nNLa +l+++g++deA  l++e+la+rr++l
  KOO22336.1 437 TLASINNLASLLQDQGNFDEAGVLYRECLAARRATL 472
                 89*******************************998 PP

>> TPR_12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.2   1.5   2.2e-17   2.8e-14       4      73 ..     355     424 ..     351     424 .. 0.93
   2 !   49.4   2.4   3.2e-16   4.2e-13       8      76 ..     401     469 ..     401     470 .. 0.98

  Alignments for each domain:
  == domain 1  score: 53.2 bits;  conditional E-value: 2.2e-17
      TPR_12   4 talnnlaavlrrlgrydeAlellekaleiarrllGpdhpltattlrnLgrlyralgryeeAlelleeala 73 
                 +++ +la++l+++g++deA  l++ ale+ r++lG+ hp+t+++++nLg l++a+g+++eA   l+eal+
  KOO22336.1 355 ALQDRLATLLQAQGKLDEAGVLFRDALEASRATLGGRHPDTLISMNNLGGLLLAQGKLDEAGVVLREALE 424
                 45558********************************************************999999986 PP

  == domain 2  score: 49.4 bits;  conditional E-value: 3.2e-16
      TPR_12   8 nlaavlrrlgrydeAlellekaleiarrllGpdhpltattlrnLgrlyralgryeeAlelleealaiae 76 
                 nl+ +l+++g++deA   l++ale+ r++lG+ hp t+++ +nL+ l++ +g+++eA  l++e+la+++
  KOO22336.1 401 NLGGLLLAQGKLDEAGVVLREALEAKRATLGERHPSTLASINNLASLLQDQGNFDEAGVLYRECLAARR 469
                 89****************************************************************998 PP

>> TPR_8  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.1   0.0    0.0054       6.9       6      33 ..     359     386 ..     356     387 .. 0.92
   2 !   11.7   0.0   0.00019      0.25       4      33 ..     399     428 ..     397     429 .. 0.93
   3 !   14.7   0.0     2e-05     0.026       4      32 ..     441     469 ..     438     471 .. 0.90

  Alignments for each domain:
  == domain 1  score: 7.1 bits;  conditional E-value: 0.0054
                 HHHHHHHHTT-HHHHHHHHHHHHHHHHH CS
       TPR_8   6 nlgsiylklgdyeeAkeyyekaleldpd 33 
                 +l+ +++ +g+++eA   ++ ale++++
  KOO22336.1 359 RLATLLQAQGKLDEAGVLFRDALEASRA 386
                 6899********************9875 PP

  == domain 2  score: 11.7 bits;  conditional E-value: 0.00019
                 HHHHHHHHHHTT-HHHHHHHHHHHHHHHHH CS
       TPR_8   4 yynlgsiylklgdyeeAkeyyekaleldpd 33 
                 ++nlg ++l +g+++eA  ++++ale++++
  KOO22336.1 399 MNNLGGLLLAQGKLDEAGVVLREALEAKRA 428
                 78************************9875 PP

  == domain 3  score: 14.7 bits;  conditional E-value: 2e-05
                 HHHHHHHHHHTT-HHHHHHHHHHHHHHHH CS
       TPR_8   4 yynlgsiylklgdyeeAkeyyekaleldp 32 
                  +nl+s+++++g+++eA   y+++l +++
  KOO22336.1 441 INNLASLLQDQGNFDEAGVLYRECLAARR 469
                 68**********************98776 PP

>> TPR_1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.5   0.0    0.0029       3.7       6      29 ..     359     382 ..     359     384 .. 0.93
   2 !    9.8   0.0   0.00057      0.73       5      29 ..     400     424 ..     397     427 .. 0.91
   3 !   13.6   0.1   3.4e-05     0.043       5      29 ..     442     466 ..     439     468 .. 0.93

  Alignments for each domain:
  == domain 1  score: 7.5 bits;  conditional E-value: 0.0029
                 HHHHHHHHTT-HHHHHHHHHHHHH CS
       TPR_1   6 nlGnayfklgkydeAleyyekALe 29 
                 +l+ +++ +gk+deA   ++ ALe
  KOO22336.1 359 RLATLLQAQGKLDEAGVLFRDALE 382
                 6999***********999999998 PP

  == domain 2  score: 9.8 bits;  conditional E-value: 0.00057
                 HHHHHHHHHTT-HHHHHHHHHHHHH CS
       TPR_1   5 ynlGnayfklgkydeAleyyekALe 29 
                 +nlG +++ +gk+deA    ++ALe
  KOO22336.1 400 NNLGGLLLAQGKLDEAGVVLREALE 424
                 8***************999999998 PP

  == domain 3  score: 13.6 bits;  conditional E-value: 3.4e-05
                 HHHHHHHHHTT-HHHHHHHHHHHHH CS
       TPR_1   5 ynlGnayfklgkydeAleyyekALe 29 
                 +nl+ +++ +g++deA   y+++L 
  KOO22336.1 442 NNLASLLQDQGNFDEAGVLYRECLA 466
                 8*********************995 PP

>> TPR_2  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.4   0.2     0.002       2.5       5      30 ..     358     383 ..     354     386 .. 0.90
   2 !    9.9   0.0   0.00068      0.87       4      29 ..     399     424 ..     397     427 .. 0.92
   3 !   11.5   0.1   0.00021      0.27       5      29 ..     442     466 ..     439     469 .. 0.92

  Alignments for each domain:
  == domain 1  score: 8.4 bits;  conditional E-value: 0.002
       TPR_2   5 ynlGlayyklgdyeeAleafekAlel 30 
                  +l+ ++ ++g+++eA  +f+ Ale 
  KOO22336.1 358 DRLATLLQAQGKLDEAGVLFRDALEA 383
                 689********************985 PP

  == domain 2  score: 9.9 bits;  conditional E-value: 0.00068
       TPR_2   4 lynlGlayyklgdyeeAleafekAle 29 
                  +nlG +++++g+++eA   +++Ale
  KOO22336.1 399 MNNLGGLLLAQGKLDEAGVVLREALE 424
                 689*********************98 PP

  == domain 3  score: 11.5 bits;  conditional E-value: 0.00021
       TPR_2   5 ynlGlayyklgdyeeAleafekAle 29 
                 +nl+ ++  +g+++eA  +++++l+
  KOO22336.1 442 NNLASLLQDQGNFDEAGVLYRECLA 466
                 79********************997 PP

>> TPR_4  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.5   0.1         1   1.3e+03       7      21 ..     102     116 ..     101     117 .. 0.89
   2 !    8.0   1.0     0.004       5.2       7      25 ..     360     378 ..     355     379 .. 0.89
   3 !    9.5   0.0    0.0013       1.7       6      26 .]     401     421 ..     398     421 .. 0.91
   4 !    9.6   0.0    0.0012       1.6       6      26 .]     443     463 ..     442     463 .. 0.91

  Alignments for each domain:
  == domain 1  score: 0.5 bits;  conditional E-value: 1
       TPR_4   7 LArallalGdldeAr 21 
                 LA ++ a+G+  +A+
  KOO22336.1 102 LALTAEARGEVVDAL 116
                 899999****99997 PP

  == domain 2  score: 8.0 bits;  conditional E-value: 0.004
       TPR_4   7 LArallalGdldeAralle 25 
                 LA +l+a+G ldeA  l++
  KOO22336.1 360 LATLLQAQGKLDEAGVLFR 378
                 9*************88876 PP

  == domain 3  score: 9.5 bits;  conditional E-value: 0.0013
       TPR_4   6 aLArallalGdldeAraller 26 
                 +L+ +lla+G ldeA  +l++
  KOO22336.1 401 NLGGLLLAQGKLDEAGVVLRE 421
                 78999**********999996 PP

  == domain 4  score: 9.6 bits;  conditional E-value: 0.0012
       TPR_4   6 aLArallalGdldeAraller 26 
                 +LA +l+++G++deA  l ++
  KOO22336.1 443 NLASLLQDQGNFDEAGVLYRE 463
                 79*************988875 PP

>> TPR_MalT  MalT-like TPR region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.5   3.6     3e-09   3.9e-06      53     186 ..     324     463 ..     295     476 .. 0.73

  Alignments for each domain:
  == domain 1  score: 26.5 bits;  conditional E-value: 3e-09
    TPR_MalT  53 qGdleaAlqalqeae.klarqadslhvallall..qqaeilvaqGrLheAletyeqalqlateqglqqlplvgfllvlladllyEwndLeeAeqhlqeG 148
                 +  ++a+l+ + +a  ++a++    ++ +++ l  ++a +l+aqG+L+eA  ++++al+  + + + + p   + +  l+ ll+ +++L+eA   l+e+
  KOO22336.1 324 TATVCASLREWLAAKgRAALMRMPRKARATSALqdRLATLLQAQGKLDEAGVLFRDALEASRATLGGRHPDTLISMNNLGGLLLAQGKLDEAGVVLREA 422
                 555566666555555234433333333344444346899999999999999999999999999999999999999999999999999999999999999 PP

    TPR_MalT 149 ielleql..ep.eaaldayvllarialaqGdleeAetllek 186
                 +e  +    e+   +l++   la + + qG+ +eA  l ++
  KOO22336.1 423 LEAKRATlgERhPSTLASINNLASLLQDQGNFDEAGVLYRE 463
                 99999854444234567788899999999999999776655 PP

>> TPR_7  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.0       2.9   3.8e+03      11      29 ..     132     148 ..     115     153 .. 0.69
   2 ?    3.8   0.3     0.056        71       3      27 ..     358     383 ..     355     391 .. 0.80
   3 ?    5.2   0.1     0.019        24       2      31 ..     399     428 ..     398     433 .. 0.82
   4 !   18.8   0.2     9e-07    0.0012       1      32 [.     440     471 ..     440     475 .. 0.90

  Alignments for each domain:
  == domain 1  score: -1.6 bits;  conditional E-value: 2.9
       TPR_7  11 rlGdyeeAielyeqsLalt 29 
                 +lGd+ +Aie   +  +l+
  KOO22336.1 132 KLGDMLDAIERRLA--ELE 148
                 48888888888887..444 PP

  == domain 2  score: 3.8 bits;  conditional E-value: 0.056
       TPR_7   3 lnLarlysrlGdyeeAielyeqsL.a 27 
                 ++La l +++G+ +eA  l++ +L a
  KOO22336.1 358 DRLATLLQAQGKLDEAGVLFRDALeA 383
                 689*************9999997733 PP

  == domain 3  score: 5.2 bits;  conditional E-value: 0.019
       TPR_7   2 LlnLarlysrlGdyeeAielyeqsLaltkd 31 
                  +nL+ l  ++G+ +eA  +++++L+  ++
  KOO22336.1 399 MNNLGGLLLAQGKLDEAGVVLREALEAKRA 428
                 69***************9999998866555 PP

  == domain 4  score: 18.8 bits;  conditional E-value: 9e-07
       TPR_7   1 aLlnLarlysrlGdyeeAielyeqsLaltkdp 32 
                 +++nLa+l +++G+++eA  ly+++La +++ 
  KOO22336.1 440 SINNLASLLQDQGNFDEAGVLYRECLAARRAT 471
                 689***********************988765 PP

>> TPR_19  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.9   0.3     0.029        37      30      55 ..     359     384 ..     341     388 .. 0.78
   2 !   15.5   1.2   1.5e-05     0.019       3      56 ..     366     427 ..     364     433 .. 0.82
   3 !   13.6   1.2   5.5e-05      0.07       1      45 [.     406     458 ..     406     470 .. 0.88

  Alignments for each domain:
  == domain 1  score: 4.9 bits;  conditional E-value: 0.029
      TPR_19  30 lLAeallalgqldeAealLdalpeed 55 
                 +LA +l a+g ldeA  l  +++e+ 
  KOO22336.1 359 RLATLLQAQGKLDEAGVLFRDALEAS 384
                 68899999999999988887777765 PP

  == domain 2  score: 15.5 bits;  conditional E-value: 1.5e-05
      TPR_19   3 aegdyaeAlalleqalqedpk.....naearl...lLAeallalgqldeAealLdalpeedp 56 
                 a+g+++eA  l++ al+++       +++ ++   +L  +lla+g ldeA  +L +++e+++
  KOO22336.1 366 AQGKLDEAGVLFRDALEASRAtlggrHPDTLIsmnNLGGLLLAQGKLDEAGVVLREALEAKR 427
                 89**************995555555544444444699********************99876 PP

  == domain 3  score: 13.6 bits;  conditional E-value: 5.5e-05
      TPR_19   1 llaegdyaeAlalleqalqe........dpknaearllLAeallalgqldeAe 45 
                 lla+g+++eA   l++al++         p  ++   +LA +l  +g++deA 
  KOO22336.1 406 LLAQGKLDEAGVVLREALEAkratlgerHPSTLASINNLASLLQDQGNFDEAG 458
                 79**************997766666666999999999**************95 PP

>> TPR_16  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.2       4.3   5.5e+03      20      44 ..       5      27 ..       4      29 .. 0.64
   2 ?   -2.5   0.1       6.5   8.3e+03      41      54 ..     103     116 ..     101     121 .. 0.53
   3 !   18.5   1.1   1.9e-06    0.0024       3      63 ..     360     425 ..     359     429 .. 0.79
   4 ?    4.3   0.1     0.052        67       2      24 ..     443     465 ..     432     475 .. 0.75

  Alignments for each domain:
  == domain 1  score: -1.9 bits;  conditional E-value: 4.3
      TPR_16 20 leaalkrdpssPd.aaeAllllgdaa 44
                l a +++dp   d  a+All   +aa
  KOO22336.1  5 LSASIRSDP---DsLADALLDAIVAA 27
                566777884...44778887766665 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 6.5
      TPR_16  41 gdaalrqgrlaeAa 54 
                 ++ a ++g++ +A+
  KOO22336.1 103 ALTAEARGEVVDAL 116
                 55555555555554 PP

  == domain 3  score: 18.5 bits;  conditional E-value: 1.9e-06
      TPR_16   3 laraalragdyddAaaaleaalkr.....dpssPdaaeAllllgdaalrqgrlaeAaalyraalra 63 
                 la+++ ++g+ d+A  +++ al++     ++++Pd+  ++++lg ++l+qg l+eA  ++r+al+a
  KOO22336.1 360 LATLLQAQGKLDEAGVLFRDALEAsratlGGRHPDTLISMNNLGGLLLAQGKLDEAGVVLREALEA 425
                 67777777777777777777776522222467999****************************976 PP

  == domain 4  score: 4.3 bits;  conditional E-value: 0.052
      TPR_16   2 alaraalragdyddAaaaleaal 24 
                 +la ++ ++g++d+A  ++++ l
  KOO22336.1 443 NLASLLQDQGNFDEAGVLYRECL 465
                 57888888888888855555555 PP

>> TPR_14  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.4   0.5   0.00038      0.48       3      31 ..     356     384 ..     354     394 .. 0.88
   2 !    7.7   0.1    0.0059       7.5       7      30 ..     402     425 ..     401     435 .. 0.90
   3 !    7.7   0.3    0.0057       7.3       7      30 ..     444     467 ..     443     473 .. 0.90

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00038
      TPR_14   3 allalaeallalGdpdeAiallrralala 31 
                 ++ +la +l a+G++deA  l+r+al++ 
  KOO22336.1 356 LQDRLATLLQAQGKLDEAGVLFRDALEAS 384
                 678999********************964 PP

  == domain 2  score: 7.7 bits;  conditional E-value: 0.0059
      TPR_14   7 laeallalGdpdeAiallrralal 30 
                 l+ +lla+G++deA  +lr+al++
  KOO22336.1 402 LGGLLLAQGKLDEAGVVLREALEA 425
                 6789*****************984 PP

  == domain 3  score: 7.7 bits;  conditional E-value: 0.0057
      TPR_14   7 laeallalGdpdeAiallrralal 30 
                 la++l  +G++deA  l+r++la+
  KOO22336.1 444 LASLLQDQGNFDEAGVLYRECLAA 467
                 7999*****************996 PP

>> TPR_17  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.0   0.2      0.26   3.4e+02      19      32 ..     360     373 ..     359     374 .. 0.94
   2 ?    6.1   0.0     0.013        17      14      32 ..     397     415 ..     391     416 .. 0.89
   3 !    7.0   0.0    0.0066       8.4      15      32 ..     440     457 ..     432     458 .. 0.87

  Alignments for each domain:
  == domain 1  score: 2.0 bits;  conditional E-value: 0.26
      TPR_17  19 LAelllknGdlmtA 32 
                 LA+ll  +G+l++A
  KOO22336.1 360 LATLLQAQGKLDEA 373
                 9***********98 PP

  == domain 2  score: 6.1 bits;  conditional E-value: 0.013
      TPR_17  14 daynnLAelllknGdlmtA 32 
                  ++nnL+ lll +G+l++A
  KOO22336.1 397 ISMNNLGGLLLAQGKLDEA 415
                 689**************98 PP

  == domain 3  score: 7.0 bits;  conditional E-value: 0.0066
      TPR_17  15 aynnLAelllknGdlmtA 32 
                 + nnLA ll  +G++++A
  KOO22336.1 440 SINNLASLLQDQGNFDEA 457
                 679************998 PP

>> Osmo_CC  Osmosensory transporter coiled coil
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.0       7.5   9.6e+03      15      32 ..     138     148 ..     134     150 .. 0.55
   2 ?    4.9   0.2     0.024        31       8      34 ..     277     306 ..     274     315 .. 0.79
   3 ?    1.9   0.0      0.22   2.8e+02      30      44 ..     380     394 ..     379     395 .. 0.91
   4 !    6.3   0.0    0.0092        12      29      44 ..     421     436 ..     420     437 .. 0.92

  Alignments for each domain:
  == domain 1  score: -3.1 bits;  conditional E-value: 7.5
                 THHHHHHHHHHHHHHHHH CS
     Osmo_CC  15 dnIEqkvedideeIaaLe 32 
                 d IE++       +a+Le
  KOO22336.1 138 DAIERR-------LAELE 148
                 455555.......45444 PP

  == domain 2  score: 4.9 bits;  conditional E-value: 0.024
                 XXXXXXXTHHHHHHHHHH...HHHHHHHHH CS
     Osmo_CC   8 elLqehYdnIEqkvedid...eeIaaLeek 34 
                 elL +++d+I   v+ id   ++I+++e +
  KOO22336.1 277 ELLTDNFDEIAGIVNGIDateAQITKIEDR 306
                 9*********99888888332578877765 PP

  == domain 3  score: 1.9 bits;  conditional E-value: 0.22
                 HHHHHHHHHHHH--- CS
     Osmo_CC  30 aLeekRqrLvdqHPk 44 
                 aLe+ R +L  +HP+
  KOO22336.1 380 ALEASRATLGGRHPD 394
                 7999**********7 PP

  == domain 4  score: 6.3 bits;  conditional E-value: 0.0092
                 HHHHHHHHHHHHH--- CS
     Osmo_CC  29 aaLeekRqrLvdqHPk 44 
                 +aLe+kR +L ++HP 
  KOO22336.1 421 EALEAKRATLGERHPS 436
                 68*************5 PP

>> TPR_3  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.3   0.0     0.033        42       7      24 ..     360     377 ..     359     379 .. 0.86
   2 ?    7.2   0.0     0.004       5.1       7      26 ..     444     461 ..     438     463 .. 0.88

  Alignments for each domain:
  == domain 1  score: 4.3 bits;  conditional E-value: 0.033
                 HHHHHHHTT-HHHHHHH. CS
       TPR_3   7 yAaefynkkkyqeArelf 24 
                 +A  ++ ++k++eA  lf
  KOO22336.1 360 LATLLQAQGKLDEAGVLF 377
                 68889*********8883 PP

  == domain 2  score: 7.2 bits;  conditional E-value: 0.004
                 HHHHHHHTT-HHHHHHH..H CS
       TPR_3   7 yAaefynkkkyqeArelfsY 26 
                 +A  ++++++++eA  l  Y
  KOO22336.1 444 LASLLQDQGNFDEAGVL--Y 461
                 899***********999..6 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (484 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       489  (0.0272742); expected 358.6 (0.02)
Passed bias filter:                      418  (0.0233142); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                        14  (0.000780858); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              14  [number of targets reported over threshold]
# CPU time: 0.50u 0.27s 00:00:00.77 Elapsed: 00:00:00.42
# Mc/sec: 3452.08
//
Query:       KOO22337.1  [L=167]
Description: hypothetical protein Ctob_000732 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.9e-13   47.9   0.2    8.6e-06   25.0   0.0    2.6  2  EF-hand_5  EF hand
    5.6e-11   41.4   0.1    2.7e-05   23.8   0.0    3.0  2  EF-hand_6  EF-hand domain
      2e-10   39.4   0.2    0.00021   20.6   0.0    2.7  2  EF-hand_1  EF hand
    7.1e-10   39.2   0.1      6e-09   36.2   0.0    2.3  2  EF-hand_7  EF-hand domain pair
    3.3e-08   33.2   0.3     0.0052   16.6   0.2    2.6  2  EF-hand_8  EF-hand domain pair
    7.8e-06   25.5   0.2    1.6e-05   24.4   0.2    1.5  1  RIIa       Regulatory subunit of type II PKA R-subunit
  ------ inclusion threshold ------
      0.034   14.4   0.0      0.093   13.0   0.0    1.8  2  MHB        Haemophore, haem-binding


Domain annotation for each model (and alignments):
>> EF-hand_5  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.0   0.0   3.4e-09   8.6e-06       1      23 [.      97     119 ..      97     122 .. 0.91
   2 !   20.6   0.0   8.5e-08   0.00022       5      24 ..     143     162 ..     142     163 .. 0.90

  Alignments for each domain:
  == domain 1  score: 25.0 bits;  conditional E-value: 3.4e-09
                 HHHHHHHH-SS-SSCE-HHHHHH CS
   EF-hand_5   1 lkdtFqaiDlNgDGkIskeELkt 23 
                 lk +F+ iD++g+G+Is  ELk+
  KOO22337.1  97 LKSVFDSIDTDGSGTISQAELKK 119
                 6889*****************87 PP

  == domain 2  score: 20.6 bits;  conditional E-value: 8.5e-08
                 HHHH-SS-SSCE-HHHHHHH CS
   EF-hand_5   5 FqaiDlNgDGkIskeELktl 24 
                 ++++D++gDG ++  E++ +
  KOO22337.1 143 LEQLDMDGDGVVTWTEFESM 162
                 78***************986 PP

>> EF-hand_6  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.8   0.0     1e-08   2.7e-05       2      24 ..      97     119 ..      96     133 .. 0.92
   2 !   14.4   0.0     1e-05     0.027       6      27 ..     143     164 ..     140     166 .. 0.88

  Alignments for each domain:
  == domain 1  score: 23.8 bits;  conditional E-value: 1e-08
   EF-hand_6   2 lreaFklfDkdgdGkidaeElrk 24 
                 l+++F+ +D+dg+G+i+++El+k
  KOO22337.1  97 LKSVFDSIDTDGSGTISQAELKK 119
                 899******************97 PP

  == domain 2  score: 14.4 bits;  conditional E-value: 1e-05
   EF-hand_6   6 FklfDkdgdGkidaeElrkalr 27 
                  +++D dgdG +++ E+ ++l 
  KOO22337.1 143 LEQLDMDGDGVVTWTEFESMLG 164
                 5789**************9996 PP

>> EF-hand_1  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.6   0.0   8.2e-08   0.00021       2      23 ..      97     118 ..      96     119 .. 0.93
   2 !   16.2   0.1   2.1e-06    0.0053       7      26 ..     144     163 ..     141     165 .. 0.89

  Alignments for each domain:
  == domain 1  score: 20.6 bits;  conditional E-value: 8.2e-08
                 HHHHHHHHTTTSSSEEEHHHHH CS
   EF-hand_1   2 lkeiFrefDkDgdGkIdfeEfk 23 
                 lk +F+ +D+Dg+G+I+  E+k
  KOO22337.1  97 LKSVFDSIDTDGSGTISQAELK 118
                 7899****************98 PP

  == domain 2  score: 16.2 bits;  conditional E-value: 2.1e-06
                 HHHTTTSSSEEEHHHHHHHH CS
   EF-hand_1   7 refDkDgdGkIdfeEfkell 26 
                 + +D DgdG +++ Ef ++l
  KOO22337.1 144 EQLDMDGDGVVTWTEFESML 163
                 789**************998 PP

>> EF-hand_7  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.2   0.0      0.41     1e+03      22      36 ..      45      74 ..      27      87 .. 0.66
   2 !   36.2   0.0   2.3e-12     6e-09       4      69 ..      97     162 ..      94     164 .. 0.77

  Alignments for each domain:
  == domain 1  score: 0.2 bits;  conditional E-value: 0.41
   EF-hand_7 22 eellrllrkifqga...............g 36
                e++ ++ r +f g+                
  KOO22337.1 45 EDVFHFARDFFKGIaanvdeaaddevgngY 74
                564448888887777666666665554443 PP

  == domain 2  score: 36.2 bits;  conditional E-value: 2.3e-12
   EF-hand_7   4 lkeaFkelDtdgdgyldkeellr..llrkifqga..gegsklsdeelellfkefDtdkdGvisfdEFlkl 69 
                 lk +F+++Dtdg+g ++++el++  ++    qg     g + +     ++++ +D d+dGv++++EF+ +
  KOO22337.1  97 LKSVFDSIDTDGSGTISQAELKKklAIDTELQGLleAAGGSGDW----YVLEQLDMDGDGVVTWTEFESM 162
                 8999******************9774444444443333333243....*******************976 PP

>> EF-hand_8  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.2   0.0   1.1e-05     0.029      30      48 ..      99     117 ..      97     122 .. 0.89
   2 !   16.6   0.2     2e-06    0.0052      34      49 ..     145     160 ..     141     165 .. 0.85

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 1.1e-05
   EF-hand_8  30 ilfrefDtdgdGkisfeEF 48 
                 ++f+ +Dtdg+G+is+ E 
  KOO22337.1  99 SVFDSIDTDGSGTISQAEL 117
                 68999************97 PP

  == domain 2  score: 16.6 bits;  conditional E-value: 2e-06
   EF-hand_8  34 efDtdgdGkisfeEFc 49 
                  +D+dgdG+++++EF 
  KOO22337.1 145 QLDMDGDGVVTWTEFE 160
                 78*************5 PP

>> RIIa  Regulatory subunit of type II PKA R-subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.4   0.2   6.3e-09   1.6e-05       3      31 ..      28      56 ..      26      57 .. 0.94

  Alignments for each domain:
  == domain 1  score: 24.4 bits;  conditional E-value: 6.3e-09
                HHHHHHHHHHHHHHH--S-HHHHHHHHHH CS
        RIIa  3 lqaLLedltveVlraqPsDvlqFaadYFe 31
                 ++LL+d++ + l +qP+Dv  Fa+d+F+
  KOO22337.1 28 VKQLLNDYISAALVEQPEDVFHFARDFFK 56
                689*************************6 PP

>> MHB  Haemophore, haem-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.0   3.6e-05     0.093      13      37 ..      12      36 ..       4      68 .. 0.76
   2 ?   -2.5   0.0       2.6   6.6e+03      55      64 ..      90      99 ..      85     104 .. 0.61

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 3.6e-05
         MHB 13 sgVaastsaYLdthPdvnqaltslk 37
                + + ++ +aYLd hP+v q l++  
  KOO22337.1 12 AAIVKENNAYLDDHPEVKQLLNDYI 36
                56677889*********99988654 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 2.6
         MHB 55 nPqvaadLrg 64
                nPq +a L++
  KOO22337.1 90 NPQLRAYLKS 99
                5555554444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (167 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       604  (0.0336884); expected 358.6 (0.02)
Passed bias filter:                      527  (0.0293937); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.38u 0.23s 00:00:00.61 Elapsed: 00:00:00.37
# Mc/sec: 1367.18
//
Query:       KOO22338.1  [L=528]
Description: hypothetical protein Ctob_000733 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    4.2e-07   29.7   5.9    7.5e-07   28.9   5.9    1.4  1  zf-C3HC4_3   Zinc finger, C3HC4 type (RING finger)
  ------ inclusion threshold ------
        0.1   12.5   7.2       0.19   11.6   7.2    1.4  1  Prok-RING_4  Prokaryotic RING finger family 4


Domain annotation for each model (and alignments):
>> zf-C3HC4_3  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.9   5.9   8.3e-11   7.5e-07       1      35 [.      42      76 ..      42      82 .. 0.90

  Alignments for each domain:
  == domain 1  score: 28.9 bits;  conditional E-value: 8.3e-11
                XGSB-TTTSSSBS-EEETTEEEEEE-HHHHHHHHH CS
  zf-C3HC4_3  1 edeeCviClerprnvvllpCgHlvlCeeCaekllk 35
                ed++C+iC+ +pr v + pCgH   CeeC+ kl +
  KOO22338.1 42 EDKLCIICMAEPRAVRFAPCGHANSCEECCLKLIQ 76
                5899**************************99965 PP

>> Prok-RING_4  Prokaryotic RING finger family 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   7.2   2.1e-05      0.19       1      25 [.      46      71 ..      46      79 .. 0.90

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 2.1e-05
  Prok-RING_4  1 CvlCgeqekkailepCgHl.vCkeCf 25
                 C++C  +++ ++++pCgH   C+eC 
   KOO22338.1 46 CIICMAEPRAVRFAPCGHAnSCEECC 71
                 ************************95 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (528 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1138  (0.0634726); expected 358.6 (0.02)
Passed bias filter:                      598  (0.0333538); expected 358.6 (0.02)
Passed Vit filter:                        63  (0.00351386); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.61u 0.28s 00:00:00.89 Elapsed: 00:00:00.43
# Mc/sec: 3651.62
//
Query:       KOO22339.1  [L=103]
Description: histone h4 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.2e-08   35.1   0.1    1.4e-08   34.8   0.1    1.2  1  CENP-T_C       Centromere kinetochore component CENP-T histon
    0.00011   22.5   0.1    0.00014   22.1   0.1    1.3  1  CENP-S         CENP-S protein
    0.00016   21.7   0.2    0.00023   21.3   0.2    1.4  1  TAF            TATA box binding protein associated factor (TA
    0.00069   19.9   0.1     0.0011   19.1   0.1    1.5  1  CBFD_NFYB_HMF  Histone-like transcription factor (CBF/NF-Y) a
    0.00077   19.8   0.3    0.00086   19.7   0.3    1.3  1  Histone        Core histone H2A/H2B/H3/H4
     0.0088   16.1   0.0       0.01   15.9   0.0    1.1  1  TFIID-31kDa    Transcription initiation factor IID, 31kD subu
     0.0098   15.9   0.1      0.015   15.3   0.1    1.2  1  Bromo_TP       Bromodomain associated
  ------ inclusion threshold ------
       0.16   11.7   0.1        0.2   11.4   0.1    1.0  1  UPF0137        Uncharacterised protein family (UPF0137)


Domain annotation for each model (and alignments):
>> CENP-T_C  Centromere kinetochore component CENP-T histone fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.8   0.1   6.4e-12   1.4e-08      18      79 ..      35      96 ..      18      99 .. 0.84

  Alignments for each domain:
  == domain 1  score: 34.8 bits;  conditional E-value: 6.4e-12
    CENP-T_C 18 krfakasgskaklekealkalekasdkffeqvgeDLeayakHagRKtidesDvilLmkrqrk 79
                 r   ++g  ++++   ++    +++ f+e v +D  +y++Ha+RKt+ + Dv+  +krq++
  KOO22339.1 35 IRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGR 96
                3333444666788888899999999***********************************86 PP

>> CENP-S  CENP-S protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.1   0.1   6.4e-08   0.00014      36      73 ..      49      94 ..      21      97 .. 0.81

  Alignments for each domain:
  == domain 1  score: 22.1 bits;  conditional E-value: 6.4e-08
      CENP-S 36 elvykq........lenlakDLeaFakHAkRstittdDvlLlaRrn 73
                 l+y++        len+ +D  ++ +HA+R+t+t+ Dv+  ++r+
  KOO22339.1 49 GLIYEEtrgvlkvfLENVIRDAVTYTEHARRKTVTAMDVVYALKRQ 94
                555555555555558999*********************9998885 PP

>> TAF  TATA box binding protein associated factor (TAF)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.3   0.2     1e-07   0.00023      33      66 .]      59      92 ..      27      92 .. 0.76

  Alignments for each domain:
  == domain 1  score: 21.3 bits;  conditional E-value: 1e-07
                HHHHHHHHHHHHHHHHHHTT-SSB-HHHHHHHH- CS
         TAF 33 veyrlkeivqeaakfmrhskRqkLtvaDvdsALr 66
                ++  l +++++a+ +++h++R++ t+ Dv +AL+
  KOO22339.1 59 LKVFLENVIRDAVTYTEHARRKTVTAMDVVYALK 92
                5566889*************************98 PP

>> CBFD_NFYB_HMF  Histone-like transcription factor (CBF/NF-Y) and archaeal histone
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.1   0.1   5.1e-07    0.0011      31      65 .]      57      91 ..      30      91 .. 0.81

  Alignments for each domain:
  == domain 1  score: 19.1 bits;  conditional E-value: 5.1e-07
                   HHHHHHHHHHHHHHHHHHCCTTSSCE-HHHHHHHH CS
  CBFD_NFYB_HMF 31 ecveefieelaseAaeickkekrKtikaehiklAv 65
                    +++ f+e + + A+ ++++++rKt++a ++  A+
     KOO22339.1 57 GVLKVFLENVIRDAVTYTEHARRKTVTAMDVVYAL 91
                   56789*************************98886 PP

>> Histone  Core histone H2A/H2B/H3/H4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.7   0.3   3.8e-07   0.00086      95     129 ..      58      92 ..      16      94 .. 0.89

  Alignments for each domain:
  == domain 1  score: 19.7 bits;  conditional E-value: 3.8e-07
                 HHHHHHHHHHHHHHHHHHHTTXSEEXHHHHHHHHH CS
     Histone  95 alEallvelfeeAnllakhaKRvTitpkDiqlArr 129
                 +l+ +l+ +  +A  +++ha+R+T+t+ D+  A++
  KOO22339.1  58 VLKVFLENVIRDAVTYTEHARRKTVTAMDVVYALK 92 
                 67889*************************99987 PP

>> TFIID-31kDa  Transcription initiation factor IID, 31kD subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.0   4.5e-06      0.01      36      70 ..      60      94 ..      32     101 .. 0.80

  Alignments for each domain:
  == domain 1  score: 15.9 bits;  conditional E-value: 4.5e-06
  TFIID-31kDa 36 yrytssvLedAkvlaehakkkevslddvrlAiqsr 70
                   +  +v++dA ++ eha++k+v++ dv  A++ +
   KOO22339.1 60 KVFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQ 94
                 567889***********************999865 PP

>> Bromo_TP  Bromodomain associated
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.1   6.6e-06     0.015      34      70 ..      57      93 ..      51      97 .. 0.90

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 6.6e-06
                HHHHHHHHHHHHHHHHHHTTSS-SS--HHHHHHHHHH CS
    Bromo_TP 34 eiaqkYirelgeqaksfaehagRseptlkDvvltLqe 70
                ++++ +++++ ++a  + eha+R ++t  Dvv +L++
  KOO22339.1 57 GVLKVFLENVIRDAVTYTEHARRKTVTAMDVVYALKR 93
                67778999999************************97 PP

>> UPF0137  Uncharacterised protein family (UPF0137)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.1   8.8e-05       0.2     141     212 ..      23      94 ..      18      99 .. 0.92

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 8.8e-05
     UPF0137 141 lkseveslPrqavYtLasRegslekkeeiienynGetktelleiirktfPlldtdrRqknlsekllellakl 212
                 l+ +++ + + a+  La R g  +    i e+ +G  k  l ++ir  +  +++ rR++  +  ++  l++ 
  KOO22339.1  23 LRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQ 94 
                 788999***************9999999********************************999999999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (103 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       553  (0.0308439); expected 358.6 (0.02)
Passed bias filter:                      472  (0.0263261); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.38u 0.26s 00:00:00.64 Elapsed: 00:00:00.40
# Mc/sec: 770.24
//
Query:       KOO22340.1  [L=407]
Description: hypothetical protein Ctob_000735 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
     0.0017   18.6   0.1       0.18   12.2   0.0    2.8  2  Ank_5     Ankyrin repeats (many copies)
  ------ inclusion threshold ------
      0.065   13.8   0.0       0.24   12.0   0.0    1.9  2  Ank_2     Ankyrin repeats (3 copies)
      0.099   13.3   0.0        7.9    7.4   0.0    3.1  2  Ank_3     Ankyrin repeat
       0.12   12.8   0.0         18    6.0   0.0    3.1  2  Ank       Ankyrin repeat


Domain annotation for each model (and alignments):
>> Ank_5  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.2   0.0     0.026   1.2e+02      35      54 ..     294     314 ..     290     315 .. 0.88
   2 !   12.2   0.0   3.9e-05      0.18       3      50 ..     331     380 ..     329     386 .. 0.75

  Alignments for each domain:
  == domain 1  score: 3.2 bits;  conditional E-value: 0.026
       Ank_5  35 Ll.argadlnltdsrGltald 54 
                 +l a++a++  +d++G+++l+
  KOO22340.1 294 MLkAYPAAASEQDADGNMPLH 314
                 67899**************96 PP

  == domain 2  score: 12.2 bits;  conditional E-value: 3.9e-05
       Ank_5   3 ehgpadvnrldgggntpLhvAakygaadvvrlLl..argadlnltdsrGl 50 
                 ++ pa+v +++    +pLh+Aa++  +dvv++ l   +++ l+++ ++G 
  KOO22340.1 331 KANPAAVSHPNHALDLPLHMAAENKPSDVVINRLvdGFPEGLKTQSGSGH 380
                 5556666666655569************9999887888888888888775 PP

>> Ank_2  Ankyrin repeats (3 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.0       3.8   1.7e+04      29      72 ..     125     141 ..     115     142 .. 0.53
   2 ?   12.0   0.0   5.5e-05      0.24      23      69 ..     303     360 ..     282     367 .. 0.67

  Alignments for each domain:
  == domain 1  score: -3.5 bits;  conditional E-value: 3.8
       Ank_2  29 aLhyAakngnleivklLlehadndgrtpLhyAarsghleivklL 72 
                 +  +A+ +                            +++++ +L
  KOO22340.1 125 PALLACYQ---------------------------RYQQFCSFL 141
                 34444444...........................444444443 PP

  == domain 2  score: 12.0 bits;  conditional E-value: 5.5e-05
       Ank_2  23 n.k..ngktaLhyAak.ngnl.eivklLleh......adndgrtpLhyAarsghleiv 69 
                 + +  +g+ +Lh ++  + ++  i++lL ++       +     pLh+Aa+++ +++v
  KOO22340.1 303 SeQdaDGNMPLHRSIVqKASErTILRLLKANpaavshPNHALDLPLHMAAENKPSDVV 360
                 23235799****55551444425678888767665444455779******99998887 PP

>> Ank_3  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.2   0.0     0.086   3.9e+02       1      28 [.     308     336 ..     308     339 .. 0.68
   2 ?    7.4   0.0    0.0018       7.9       5      23 ..     347     366 ..     344     371 .. 0.84

  Alignments for each domain:
  == domain 1  score: 2.2 bits;  conditional E-value: 0.086
       Ank_3   1 nGetpLhlAarsgnle.ivkfLlenkgad 28 
                 +G+ pLh+ + +   e  +  Ll+ + a 
  KOO22340.1 308 DGNMPLHRSIVQKASErTILRLLKANPAA 336
                 6999***9998888875355555546665 PP

  == domain 2  score: 7.4 bits;  conditional E-value: 0.0018
       Ank_3   5 pLhlAarsgnle.ivkfLle 23 
                 pLh+Aa++ + + ++  L++
  KOO22340.1 347 PLHMAAENKPSDvVINRLVD 366
                 9***********66888877 PP

>> Ank  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.0   0.0     0.004        18       1      30 [.     308     337 ..     308     339 .. 0.78
   2 ?    3.4   0.0     0.027   1.2e+02       5      18 ..     347     360 ..     345     368 .. 0.75

  Alignments for each domain:
  == domain 1  score: 6.0 bits;  conditional E-value: 0.004
                 TSBBHHHHHH.HHTTHHHHHHHHTTTSTTCB CS
         Ank   1 dGnTPLHlAa.tngkkriiklLLhGAnlnal 30 
                 dGn PLH+ + + +++r i  LL  An++a+
  KOO22340.1 308 DGNMPLHRSIvQKASERTILRLL-KANPAAV 337
                 8999***9777666677776688.8999986 PP

  == domain 2  score: 3.4 bits;  conditional E-value: 0.027
                 HHHHHHHHTTHHHH CS
         Ank   5 PLHlAatngkkrii 18 
                 PLH+Aa n+  +++
  KOO22340.1 347 PLHMAAENKPSDVV 360
                 9*****76656665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (407 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       598  (0.0333538); expected 358.6 (0.02)
Passed bias filter:                      450  (0.025099); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.48u 0.25s 00:00:00.73 Elapsed: 00:00:00.40
# Mc/sec: 3022.62
//
Query:       KOO22341.1  [L=194]
Description: hypothetical protein Ctob_000736 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (194 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       401  (0.022366); expected 358.6 (0.02)
Passed bias filter:                      239  (0.0133304); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.41u 0.19s 00:00:00.60 Elapsed: 00:00:00.37
# Mc/sec: 1574.03
//
Query:       KOO22342.1  [L=188]
Description: zinc c3hc4 type (ring finger) domain containing protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    8.4e-43  145.7   0.0      1e-42  145.4   0.0    1.1  1  DTC        Deltex C-terminal domain
  ------ inclusion threshold ------
      0.014   15.7   0.6      0.028   14.7   0.6    1.5  1  zf-RING_2  Ring finger domain


Domain annotation for each model (and alignments):
>> DTC  Deltex C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  145.4   0.0   1.2e-46     1e-42       2     130 ..      52     179 ..      51     182 .. 0.98

  Alignments for each domain:
  == domain 1  score: 145.4 bits;  conditional E-value: 1.2e-46
         DTC   2 GnqpegkmevekikeslpgyekcgtivikYeiksgiqteehpnpgkkysgtsrtayLPdneegrkvlkllkkafdqrliftvGtssttgesnvvvwndi 100
                 G qp+g+m+ +    +++g+  +gti+i+Y++++giq ++hpnpg +ysgt+r+ay+P++++gr+ l+ll+ af q  +f +G+s+ttge+n+ vw  i
  KOO22342.1  52 GPQPAGTMSAKLGAFDCEGHPGVGTIEIDYTFSHGIQLPQHPNPGMPYSGTHRKAYVPNDADGRRALRLLEAAFMQGQTFRIGKSVTTGEENTTVWC-I 149
                 88**********************************************************************************************8.* PP

         DTC 101 hhKtslsggpekfGyPdpeYlkrvkeeLka 130
                 h+Kt+++ggp+++GyPdpe+l+r+++e +a
  KOO22342.1 150 HQKTRTDGGPTRHGYPDPEFLQRLQSECAA 179
                 **************************9887 PP

>> zf-RING_2  Ring finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.7   0.6   3.1e-06     0.028      10      43 ..       5      44 ..       2      45 .. 0.77

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 3.1e-06
   zf-RING_2 10 lssadsvl.llpCgH....v.fhreClerwlrssstCPlC 43
                l ++d+v+ +lpC+     + f ++ le  +r++ +CP C
  KOO22342.1  5 LGEDDEVVvRLPCCTaavpCiFNKSTLEAAFRTQGKCPSC 44
                555666552669997677755999999************* PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (188 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       418  (0.0233142); expected 358.6 (0.02)
Passed bias filter:                      317  (0.0176809); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.37u 0.24s 00:00:00.61 Elapsed: 00:00:00.38
# Mc/sec: 1492.92
//
Query:       KOO22343.1  [L=218]
Description: s-adenosylmethionine mitochondrial carrier [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.9e-34  117.5   1.8    3.6e-21   74.9   0.1    2.4  3  Mito_carr  Mitochondrial carrier protein


Domain annotation for each model (and alignments):
>> Mito_carr  Mitochondrial carrier protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.0      0.34     6e+03      82      92 ..       2      12 ..       1      14 [. 0.69
   2 !   41.8   0.1   4.3e-15   7.7e-11       9      94 ..      27     105 ..      20     108 .. 0.92
   3 !   74.9   0.1     2e-25   3.6e-21       3      96 ..     112     207 ..     110     208 .. 0.95

  Alignments for each domain:
  == domain 1  score: -2.8 bits;  conditional E-value: 0.34
                HHHHHHHHHHH CS
   Mito_carr 82 kfvlyetlkrl 92
                 f++ye +k  
  KOO22343.1  2 FFSAYEGMKPR 12
                57888888764 PP

  == domain 2  score: 41.8 bits;  conditional E-value: 4.3e-15
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSTTTSCSSHHHHHHHHHHHHHHHGGGTTHHHHHHHHHHHHHHHHHHHHHHHHHHC CS
   Mito_carr   9 llaGglagavatlvttPldvvKtrlqtqkksskksksaaildvlkkiykeeGlrglyrGllpnllrvapasalkfvlyetlkrlll 94 
                  ++++++ ++a lv  P+ vv  r+q+ +  +       +++++ ki+ e G++ ++ G++ ++ r +p s+++f lye lkr+l 
  KOO22343.1  27 AFSASCGEVAACLVRVPTQVVTQRMQVGQYAT-------FWEAVPKIFAESGISTFFIGYWTTVAREIPFSFIQFPLYEGLKRMLA 105
                 6789999999****************987764.......9*******************************************985 PP

  == domain 3  score: 74.9 bits;  conditional E-value: 2e-25
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSTTTSCSS..HHHHHHHHHHHHHHHGGGTTHHHHHHHHHHHHHHHHHHHHHHHHHHCTT CS
   Mito_carr   3 lsvlkellaGglagavatlvttPldvvKtrlqtqkksskksksaa..ildvlkkiykeeGlrglyrGllpnllrvapasalkfvlyetlkrlllkk 96 
                 +++++  l+G+++ga+a+++t+PldvvKtr+++ +k+++ + +++  +l+ l++i+ e+G  +l+ G++p++ ++++  ++ f++ye+ ++ll k+
  KOO22343.1 112 TTPTQGALCGSFSGAIAGVATCPLDVVKTRMMLGRKTKEGELYSGlgTLRGLRTIVAEDGAGALFAGVVPRFGWITIGGFVFFGAYEKAQDLLWKS 207
                 5678889******************************999988889**********************************************9885 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (218 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       248  (0.0138323); expected 358.6 (0.02)
Passed bias filter:                      212  (0.0118244); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.24s 00:00:00.61 Elapsed: 00:00:00.39
# Mc/sec: 1697.42
//
Query:       KOO22344.1  [L=964]
Description: tpr domain protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    0.00052   19.6   0.1      0.019   14.7   0.0    3.2  4  TPR_11    TPR repeat
    0.00064   20.2   8.8       0.02   15.4   0.0    4.9  5  TPR_19    Tetratricopeptide repeat
  ------ inclusion threshold ------
      0.011   15.7   0.0      0.011   15.7   0.0    5.4  7  TPR_2     Tetratricopeptide repeat
      0.012   15.6   0.0       0.42   10.8   0.0    3.2  2  TPR_7     Tetratricopeptide repeat
      0.013   15.3   0.1       0.28   11.1   0.1    3.1  3  TPR_1     Tetratricopeptide repeat
      0.058   14.2   0.1      0.058   14.2   0.1    5.6  5  TPR_14    Tetratricopeptide repeat
        1.4    8.9   3.8       0.73    9.8   0.1    2.6  2  TPR_10    Tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> TPR_11  TPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.9   0.0       4.8   1.2e+04      25      36 ..      20      31 ..      16      32 .. 0.79
   2 ?    0.7   0.0      0.17   4.3e+02      11      38 ..     104     131 ..     104     132 .. 0.91
   3 ?   -2.8   0.0       2.1   5.5e+03       8      14 ..     329     335 ..     326     337 .. 0.77
   4 !   14.7   0.0   7.4e-06     0.019       3      31 ..     598     626 ..     596     629 .. 0.91

  Alignments for each domain:
  == domain 1  score: -3.9 bits;  conditional E-value: 4.8
      TPR_11 25 PdnaeayynLGl 36
                P +a+ay+  ++
  KOO22344.1 20 PADARAYLSAHN 31
                899999987665 PP

  == domain 2  score: 0.7 bits;  conditional E-value: 0.17
      TPR_11  11 eeAieaYkkAlkldPdnaeayynLGlay 38 
                 eeA  +++ A+  d d a  +++L+la+
  KOO22344.1 104 EEAAFCFSSAIVADADCAMGHWGLALAH 131
                 788889999*****************98 PP

  == domain 3  score: -2.8 bits;  conditional E-value: 2.1
      TPR_11   8 GkyeeAi 14 
                 G+ye+A+
  KOO22344.1 329 GNYEQAM 335
                 8999997 PP

  == domain 4  score: 14.7 bits;  conditional E-value: 7.4e-06
      TPR_11   3 ayyeqGkyeeAieaYkkAlkldPdnaeay 31 
                 +++eqG y+ A+++Y++ l+l Pdn++a+
  KOO22344.1 598 LLTEQGLYDRALKVYEEDLQLFPDNPWAL 626
                 689************************97 PP

>> TPR_19  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.7   0.1      0.31   7.9e+02      32      46 ..      23      37 ..      21      54 .. 0.75
   2 ?    2.9   0.9     0.061   1.6e+02      12      36 ..     208     232 ..     203     234 .. 0.82
   3 ?   -2.7   0.0       3.6   9.1e+03      36      46 ..     326     336 ..     324     337 .. 0.79
   4 !   15.4   0.0   7.8e-06      0.02       2      35 ..     600     633 ..     599     636 .. 0.94
   5 ?    1.5   0.0      0.17   4.4e+02      27      50 ..     728     751 ..     714     761 .. 0.82

  Alignments for each domain:
  == domain 1  score: 0.7 bits;  conditional E-value: 0.31
      TPR_19 32 AeallalgqldeAea 46
                A+a+l++ ++++A++
  KOO22344.1 23 ARAYLSAHNVEAAIK 37
                89***********75 PP

  == domain 2  score: 2.9 bits;  conditional E-value: 0.061
      TPR_19  12 alleqalqedpknaearllLAeall 36 
                 a+++q+ +++p +a++++ +Aea++
  KOO22344.1 208 AAMAQVADAYPRDADVQAIYAEACM 232
                 556777777*********9999986 PP

  == domain 3  score: -2.7 bits;  conditional E-value: 3.6
      TPR_19  36 lalgqldeAea 46 
                 ++ g++++A++
  KOO22344.1 326 IQVGNYEQAMR 336
                 78899999975 PP

  == domain 4  score: 15.4 bits;  conditional E-value: 7.8e-06
      TPR_19   2 laegdyaeAlalleqalqedpknaearllLAeal 35 
                  ++g y++Al+ +e+ lq  p+n++a++++ ++l
  KOO22344.1 600 TEQGLYDRALKVYEEDLQLFPDNPWALAGMRNCL 633
                 689******************************8 PP

  == domain 5  score: 1.5 bits;  conditional E-value: 0.17
      TPR_19  27 arllLAeallalgqldeAealLda 50 
                 + l+  ++ll + ++deA+a++++
  KOO22344.1 728 IFLRFHKLLLDTWNYDEAKATVAE 751
                 5666778999999*******9875 PP

>> TPR_2  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.1       2.8   7.1e+03       8      22 ..      23      37 ..      23      38 .. 0.89
   2 ?    6.2   0.0     0.005        13       2      28 ..      88     114 ..      87     120 .. 0.89
   3 ?   -3.5   0.1       6.3   1.6e+04      20      30 ..     159     169 ..     158     170 .. 0.88
   4 ?   -1.3   0.0       1.3   3.3e+03      14      23 ..     328     337 ..     326     337 .. 0.82
   5 ?   -2.7   0.3       3.5   9.1e+03       9      24 ..     372     387 ..     372     389 .. 0.84
   6 ?   15.7   0.0   4.5e-06     0.011       6      34 .]     594     622 ..     591     622 .. 0.95
   7 ?   -2.3   0.0       2.6   6.8e+03      12      21 ..     737     746 ..     735     748 .. 0.77

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 2.8
       TPR_2  8 GlayyklgdyeeAle 22
                ++ay+ + + e A++
  KOO22344.1 23 ARAYLSAHNVEAAIK 37
                689999*****9997 PP

  == domain 2  score: 6.2 bits;  conditional E-value: 0.005
       TPR_2   2 ealynlGlayyklgdyeeAleafekAl 28 
                 + ++ +G+++++  + eeA+ +f  A+
  KOO22344.1  88 QRWFDRGWVWLAGFHREEAAFCFSSAI 114
                 569********************9988 PP

  == domain 3  score: -3.5 bits;  conditional E-value: 6.3
       TPR_2  20 AleafekAlel 30 
                 A++a + Al+l
  KOO22344.1 159 AVKAIQTALAL 169
                 89999999997 PP

  == domain 4  score: -1.3 bits;  conditional E-value: 1.3
       TPR_2  14 lgdyeeAlea 23 
                  g+ye+A ++
  KOO22344.1 328 VGNYEQAMRC 337
                 59*****886 PP

  == domain 5  score: -2.7 bits;  conditional E-value: 3.5
       TPR_2   9 layyklgdyeeAleaf 24 
                 +a++++g+ + A+ea 
  KOO22344.1 372 WAAMYAGNQATAREAA 387
                 58899***99999985 PP

  == domain 6  score: 15.7 bits;  conditional E-value: 4.5e-06
       TPR_2   6 nlGlayyklgdyeeAleafekAleldPnn 34 
                  lG ++ ++g y++Al+ +e+ l+l P+n
  KOO22344.1 594 TLGALLTEQGLYDRALKVYEEDLQLFPDN 622
                 6999***********************98 PP

  == domain 7  score: -2.3 bits;  conditional E-value: 2.6
       TPR_2  12 yklgdyeeAl 21 
                 +   +y+eA+
  KOO22344.1 737 LDTWNYDEAK 746
                 56679****8 PP

>> TPR_7  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.6   0.0      0.28   7.2e+02      11      22 ..     327     338 ..     322     353 .. 0.86
   2 ?   10.8   0.0   0.00016      0.42       5      28 ..     595     618 ..     593     623 .. 0.88

  Alignments for each domain:
  == domain 1  score: 0.6 bits;  conditional E-value: 0.28
       TPR_7  11 rlGdyeeAiely 22 
                 ++G+ye+A +++
  KOO22344.1 327 QVGNYEQAMRCN 338
                 58******9985 PP

  == domain 2  score: 10.8 bits;  conditional E-value: 0.00016
       TPR_7   5 LarlysrlGdyeeAielyeqsLal 28 
                 L+ l  ++G y++A+++ye+ L+l
  KOO22344.1 595 LGALLTEQGLYDRALKVYEEDLQL 618
                 8999****************8866 PP

>> TPR_1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.0       3.4   8.7e+03      18      28 ..     104     114 ..      90     117 .. 0.81
   2 ?   -0.3   0.0      0.42   1.1e+03      14      23 ..     328     337 ..     326     338 .. 0.86
   3 ?   11.1   0.1   0.00011      0.28       7      34 .]     595     622 ..     593     622 .. 0.94

  Alignments for each domain:
  == domain 1  score: -3.1 bits;  conditional E-value: 3.4
                 HHHHHHHHHHH CS
       TPR_1  18 deAleyyekAL 28 
                 +eA  +++ A+
  KOO22344.1 104 EEAAFCFSSAI 114
                 89999999987 PP

  == domain 2  score: -0.3 bits;  conditional E-value: 0.42
                 TT-HHHHHHH CS
       TPR_1  14 lgkydeAley 23 
                  g+y++A  +
  KOO22344.1 328 VGNYEQAMRC 337
                 69*****987 PP

  == domain 3  score: 11.1 bits;  conditional E-value: 0.00011
                 HHHHHHHTT-HHHHHHHHHHHHHHSTTH CS
       TPR_1   7 lGnayfklgkydeAleyyekALelnPnn 34 
                 lG+++ ++g yd Al+ ye+ L+l P+n
  KOO22344.1 595 LGALLTEQGLYDRALKVYEEDLQLFPDN 622
                 8*******************99999997 PP

>> TPR_14  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.0   0.5     0.092   2.3e+02       8      35 ..      23      51 ..      21      59 .. 0.85
   2 ?   -2.0   0.1       3.6   9.2e+03       4      38 ..      90     124 ..      88     130 .. 0.77
   3 ?   -2.1   0.6       3.9     1e+04      23      43 ..     209     229 ..     203     230 .. 0.67
   4 ?   -1.1   0.2       1.9   4.7e+03       9      32 ..     372     395 ..     370     407 .. 0.74
   5 ?   14.2   0.1   2.3e-05     0.058       4      39 ..     592     627 ..     589     629 .. 0.91

  Alignments for each domain:
  == domain 1  score: 3.0 bits;  conditional E-value: 0.092
      TPR_14  8 aeallalGdpdeAia.llrralalaPdda 35
                a+a+l + + ++Ai+ + +r+la  P+d+
  KOO22344.1 23 ARAYLSAHNVEAAIKeAINRVLASRPADP 51
                89*************999999*9999886 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 3.6
      TPR_14   4 llalaeallalGdpdeAiallrralalaPddaeaw 38 
                 + +++++ la    +eA+ ++  a+ ++ d a  +
  KOO22344.1  90 WFDRGWVWLAGFHREEAAFCFSSAIVADADCAMGH 124
                 67788888888888999999999999888876555 PP

  == domain 3  score: -2.1 bits;  conditional E-value: 3.9
      TPR_14  23 llrralalaPddaeawlllaq 43 
                 +  ++ +++P da+++  +a+
  KOO22344.1 209 AMAQVADAYPRDADVQAIYAE 229
                 334445568999999888876 PP

  == domain 4  score: -1.1 bits;  conditional E-value: 1.9
      TPR_14   9 eallalGdpdeAiallrralalaP 32 
                 +a + +G+ ++A++++ ++ +l+ 
  KOO22344.1 372 WAAMYAGNQATAREAAAEIDKLFT 395
                 567789999999999988877664 PP

  == domain 5  score: 14.2 bits;  conditional E-value: 2.3e-05
      TPR_14   4 llalaeallalGdpdeAiallrralalaPddaeawl 39 
                 ++ l+++l ++G +d+A++++++ l+l+Pd+++a+ 
  KOO22344.1 592 RQTLGALLTEQGLYDRALKVYEEDLQLFPDNPWALA 627
                 6789*******************99*******9985 PP

>> TPR_10  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   0.1   0.00029      0.73       5      30 ..     592     617 ..     588     618 .. 0.87
   2 ?   -4.0   0.6         6   1.5e+04      15      28 ..     838     851 ..     836     855 .. 0.65

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.00029
      TPR_10   5 lnNLanalrqrgrydeAealleeala 30 
                 +  L+++l+++g yd+A++ +ee l+
  KOO22344.1 592 RQTLGALLTEQGLYDRALKVYEEDLQ 617
                 568*******************9886 PP

  == domain 2  score: -4.0 bits;  conditional E-value: 6
      TPR_10  15 rgrydeAealleea 28 
                  +r+++A++ ++ a
  KOO22344.1 838 AKRHAQAVERQKAA 851
                 57888888775544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (964 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       730  (0.0407162); expected 358.6 (0.02)
Passed bias filter:                      469  (0.0261587); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.73u 0.29s 00:00:01.02 Elapsed: 00:00:00.45
# Mc/sec: 6480.18
//
Query:       KOO22345.1  [L=200]
Description: hypothetical protein Ctob_000727 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (200 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       708  (0.0394891); expected 358.6 (0.02)
Passed bias filter:                      443  (0.0247086); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.40u 0.23s 00:00:00.63 Elapsed: 00:00:00.38
# Mc/sec: 1582.00
//
Query:       KOO22346.1  [L=329]
Description: hypothetical protein Ctob_000726, partial [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
  ------ inclusion threshold ------
       0.27   10.9   1.5         12    5.6   0.0    3.5  4  BPD_transp_1  Binding-protein-dependent transport system inne
       0.31   11.4   5.5         21    5.5   0.1    3.6  4  DUF3599       Domain of unknown function (DUF3599)
        1.1   10.0   7.6        5.6    7.7   0.7    3.2  3  HlyD_3        HlyD family secretion protein


Domain annotation for each model (and alignments):
>> BPD_transp_1  Binding-protein-dependent transport system inner membrane component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.1   0.0      0.11   6.7e+02      74      99 ..      33      58 ..      28      61 .. 0.85
   2 ?    0.6   0.0     0.065   3.9e+02      74      99 ..      82     107 ..      77     113 .. 0.85
   3 ?   -1.4   0.0      0.27   1.6e+03      77      99 ..     133     155 ..     129     158 .. 0.83
   4 ?    5.6   0.0    0.0019        12      74     107 ..     179     212 ..     174     215 .. 0.88

  Alignments for each domain:
  == domain 1  score: -0.1 bits;  conditional E-value: 0.11
  BPD_transp_1 74 aalrslpkdlveaaralGasrwqifr 99
                  a+  ++pk++ve+a a  ++r+ ++r
    KOO22346.1 33 AGRAIVPKQHVEVAVAVDVRRRDRVR 58
                  66779***********9999998876 PP

  == domain 2  score: 0.6 bits;  conditional E-value: 0.065
  BPD_transp_1  74 aalrslpkdlveaaralGasrwqifr 99 
                   a+ +++pk++ve+a a  ++r+ ++r
    KOO22346.1  82 AGTEIVPKQHVEVAVAVDVRRRDRVR 107
                   67789************999998776 PP

  == domain 3  score: -1.4 bits;  conditional E-value: 0.27
  BPD_transp_1  77 rslpkdlveaaralGasrwqifr 99 
                    ++pk++ve+a a  ++r+ + r
    KOO22346.1 133 AIVPKQHVEVAVAVDVRRRYRAR 155
                   689*********99999987665 PP

  == domain 4  score: 5.6 bits;  conditional E-value: 0.0019
  BPD_transp_1  74 aalrslpkdlveaaralGasrwqifrkvvlPnal 107
                   a+  s+pk++ve+a a  ++r+ +f++ +lP ++
    KOO22346.1 179 AGTVSVPKQHVEVAVAVDVRRRDRFVYALLPGSA 212
                   56679**************************875 PP

>> DUF3599  Domain of unknown function (DUF3599)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.5   0.1    0.0036        21      58      99 ..      27      68 ..      22      78 .. 0.84
   2 ?    5.0   0.1    0.0051        31      58      99 ..      76     117 ..      70     127 .. 0.83
   3 ?   -0.4   0.0      0.23   1.4e+03      60      91 ..     126     157 ..     119     169 .. 0.77
   4 ?    0.9   0.1     0.093   5.6e+02      59      90 ..     174     205 ..     167     208 .. 0.78

  Alignments for each domain:
  == domain 1  score: 5.5 bits;  conditional E-value: 0.0036
                EEEETTTTEEEEEEEEEEEETTS---TT-EEEETTEEEEE-S CS
     DUF3599 58 sivqeepevsiyqsflvhfpleaDirlnDkvvwngvayklqi 99
                ++ q+ +   i+ + +v + ++ D+r  D+v ++ v+ +l+ 
  KOO22346.1 27 RVEQHSAGRAIVPKQHVEVAVAVDVRRRDRVRVRAVTGQLDA 68
                677888999999*******************99988777765 PP

  == domain 2  score: 5.0 bits;  conditional E-value: 0.0051
                 EEEETTTTEEEEEEEEEEEETTS---TT-EEEETTEEEEE-S CS
     DUF3599  58 sivqeepevsiyqsflvhfpleaDirlnDkvvwngvayklqi 99 
                 ++ q+ + ++i+ + +v + ++ D+r  D+v ++  a +l+ 
  KOO22346.1  76 RVEQHLAGTEIVPKQHVEVAVAVDVRRRDRVRVRAAAGQLDA 117
                 5667778899999******************99887766665 PP

  == domain 3  score: -0.4 bits;  conditional E-value: 0.23
                 EETTTTEEEEEEEEEEEETTS---TT-EEEET CS
     DUF3599  60 vqeepevsiyqsflvhfpleaDirlnDkvvwn 91 
                 v++ + + i+ + +v + ++ D+r   ++  +
  KOO22346.1 126 VEQHSGNAIVPKQHVEVAVAVDVRRRYRARTR 157
                 67788889999999999999999988776665 PP

  == domain 4  score: 0.9 bits;  conditional E-value: 0.093
                 EEETTTTEEEEEEEEEEEETTS---TT-EEEE CS
     DUF3599  59 ivqeepevsiyqsflvhfpleaDirlnDkvvw 90 
                 + q+ + ++ + + +v + ++ D+r  D+ v+
  KOO22346.1 174 VEQHSAGTVSVPKQHVEVAVAVDVRRRDRFVY 205
                 556666666677788999999*******9886 PP

>> HlyD_3  HlyD family secretion protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.5   0.2     0.019   1.1e+02      30      61 ..      37      66 ..      35      82 .. 0.74
   2 ?    7.7   0.7   0.00094       5.6      29      96 ..      85     149 ..      82     169 .. 0.79
   3 ?    0.8   0.1      0.13   7.7e+02      38      62 ..     170     194 ..     158     206 .. 0.74

  Alignments for each domain:
  == domain 1  score: 3.5 bits;  conditional E-value: 0.019
      HlyD_3 30 iippdtllveakvpaadlgsikkkgqkvtlkl 61
                i+p+++++v ++v+ ++++++++  +  t +l
  KOO22346.1 37 IVPKQHVEVAVAVDVRRRDRVRVRAV--TGQL 66
                899*****************984444..4333 PP

  == domain 2  score: 7.7 bits;  conditional E-value: 0.00094
      HlyD_3  29 eiippdtllveakvpaadlgsikkkgqkvtlkldqgsdytlkgkierisptvdaktgaykvevslenp 96 
                 ei+p+++++v ++v+ ++++++++  ++ +l++      +  +++e+ s  +  ++++++v v+++ +
  KOO22346.1  85 EIVPKQHVEVAVAVDVRRRDRVRVRAAAGQLDAR---REAAAARVEQHSGNAIVPKQHVEVAVAVDVR 149
                 79*******************9966666666554...3477888888888776678999999988876 PP

  == domain 3  score: 0.8 bits;  conditional E-value: 0.13
      HlyD_3  38 veakvpaadlgsikkkgqkvtlkld 62 
                 ++a+v ++ +g++ +++q v++ + 
  KOO22346.1 170 ATARVEQHSAGTVSVPKQHVEVAVA 194
                 6788999999999966666666554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (329 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       621  (0.0346366); expected 358.6 (0.02)
Passed bias filter:                      221  (0.0123264); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.45u 0.26s 00:00:00.71 Elapsed: 00:00:00.39
# Mc/sec: 2554.20
//
Query:       KOO22347.1  [L=609]
Description: carotenoid oxygenase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.8e-75  254.3   0.0    5.9e-75  253.2   0.0    1.5  1  RPE65     Retinal pigment epithelial membrane protein
  ------ inclusion threshold ------
      0.019   15.2   0.0      0.045   14.0   0.0    1.6  1  DUF4873   Domain of unknown function (DUF4873)


Domain annotation for each model (and alignments):
>> RPE65  Retinal pigment epithelial membrane protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  253.2   0.0   6.6e-79   5.9e-75       3     463 .]      64     608 ..      62     608 .. 0.77

  Alignments for each domain:
  == domain 1  score: 253.2 bits;  conditional E-value: 6.6e-79
                 ---S-EEEC--E..EEE---TT--EEEEEEEEE.ESCET.TCCSSSGGGSEEEEEEEEE.CTTEEEEEEEE---HHHHHHHHHTS.............- CS
       RPE65   3 pvreevpeplevkvieGeiPawlkGtllRnGpgkpevge.dgkvshwFDGdGmlhrfef.kdgkvtyrnRfvrtdaylaerkagk.............s 86 
                 + +eev++   ++v eG++P+wl G l+RnGpg+++ g+ ++++sh FDG++ l  f+   dg v+++ Rf+rt+  ++  + gk              
  KOO22347.1  64 DSTEEVSDR-ACTV-EGKLPDWLVGRLVRNGPGQWRSGDgSRSYSHAFDGLAKLVCFDVaADGVVRFSTRFLRTEWHRQMAN-GKmppsvtvgpvtpaW 159
                 667899888.9999.8*****************999999999*****************76699**********98866555.7767766555555440 PP

                 -SBSTT.........TTSB-----SEEE..EETTEEEEEETTCEEEEEETTTTEEEEE--CCC.....TTS-B...........-SS-EEETTCEEEEE CS
       RPE65  87 lfdglp.........akkkknnantnvv..yhggrllalteagkpyeidpetLetlgkvdldg.....eseaf...........tAHpkvdpetgelyn 158
                                +  + +na +n+     ++r +a+t+a+ + e+dp+tLet g+ d +       s++f           tAHp++ p+tge++n
  KOO22347.1 160 -----NpvegltaalTGPDFDNAPVNIHrlGGSDRWVAVTDAPALIEFDPRTLETRGRLDANAtpiagASRWFgqivpgleafsTAHPQRHPKTGETLN 253
                 .....144455555544445566666662267789*************************975678885566677788888889*************** PP

                 EEECCT..CECEEEEEEE-.T...T-EEEEEEEECS.S..------EEE-SS.EEEEEE--EECHC.H..CCCTCGGCEEE-TTS-EEEEEEETTT... CS
       RPE65 159 fglslg..kppsvtysvfdvaaaidksrevkiklpgeklkpayiHdfalTen.yvvlvelplklnlkk..gkksggdalewdpekptrfgvipRrg... 249
                 ++l+l   + p  ++  ++++   d ++e+       +l+  +i ++ + +    vlv +pl++ ++k   +k++ + lewd + +++++v + rg   
  KOO22347.1 254 YHLELRpvGGPIAHIVATSAS---D-NHEQ-------PLSRRIIGSIEFEKCgIKVLVLFPLTIPFEKlaNGKGFLPQLEWDASAGSQVVVWDIRGnpl 341
                 **9998753332233333322...3.1222.......3445666666665543579999999988877887789*******************995322 PP

                 T--GG...EEEEE--SEEEEEEEEEEET.TCEEEEEEEEE.SS..--STTS-CT.T----.-....GGTGGG-EEEEEEEE.ETTTTTCEECE...... CS
       RPE65 250 ekegvakfrwfeteaffvfHtaNayeeeedgevvvdlcryedae.vldnlylenlrsrkgeak.keekaeesqsrlrryrl.dlktgsateeke..... 340
                 +++++a++ w   e+++++H++N ++e  +g + +dl +y++++ + +      l++++g     ++  +   + + r+++ d+ + ++t++ +     
  KOO22347.1 342 RQAKIATS-WRA-EPCWAYHVINVFDE--NGLITIDLNAYREPHiATGPHGFAYLENMQGGPSaLAK--QIRDGGYLRMQVnDFGDPTPTRKAScswld 434
                 23333443.443.8***********99..78899******999644444444444444443333222..234566777777467666666665577766 PP

                 ..EEEEESS-EEEEE--GGGTTS--SEEEEEE-SSTTSS......-..--EEEEEET.................................-TTTE.... CS
       RPE65 341 ..eaalsdrslEfPrinpaysgrkyryvYgasasggsdk......askfdglvkvDl.................................etkgrea.. 396
                   ++   + ++E+ r+n+ay+gr++ry+Yg +  ++ ++      + + +++vk+D+                                       +  
  KOO22347.1 435 mvDELGLNWTFELVRVNDAYTGRRHRYAYGFTGFNNHQGpgggnrFGPGGAVVKMDTeanppagpppssikprvkglfegeeargeqpsrA-----Raa 528
                 66666666666*******************88877766689988865559***************************99888877665550.....145 PP

                 ...............EE--EEEEESTTTSSTT-EEEEEEEEET.TTEEEEEEEETTBCCCSEEEEESS---S--BEEEEE CS
       RPE65 397 ............eghypgEpiFVPragateEDdGvllsvvlde.eersellvldAktltevArvelpqrvpygfHGtfvp 463
                             + ++p+Ep+FV r+ga++EDdGvll++ +d+ +++s++ vldA++++e+Arv+   r  ++fHG+++p
  KOO22347.1 529 appkpsvscwssATVFPSEPVFVGRPGASAEDDGVLLFLGYDTlRRESFMGVLDAADMSELARVHAGSRCCVSFHGQWIP 608
                 555566778888999********99999*************99***********************************86 PP

>> DUF4873  Domain of unknown function (DUF4873)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.0   5.1e-06     0.045       7      45 ..     197     235 ..     194     252 .. 0.84

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 5.1e-06
     DUF4873   7 patlvvggeeveveveLrghfePidGryrWyGrvaaeee 45 
                 pa ++++ +++e++ +L ++  Pi G  rW G++ +  e
  KOO22347.1 197 PALIEFDPRTLETRGRLDANATPIAGASRWFGQIVPGLE 235
                 799999***************************966544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (609 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       271  (0.0151152); expected 358.6 (0.02)
Passed bias filter:                      239  (0.0133304); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.52u 0.25s 00:00:00.77 Elapsed: 00:00:00.39
# Mc/sec: 4654.08
//
Query:       KOO22348.1  [L=706]
Description: hypothetical protein Ctob_007683 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
     0.0066   16.2   1.3      0.035   13.8   0.2    2.1  2  TetR      Bacterial transcriptional repressor


Domain annotation for each model (and alignments):
>> TetR  Bacterial transcriptional repressor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.8   0.2   1.9e-06     0.035      68     125 ..     131     190 ..     127     203 .. 0.77
   2 ?    0.6   0.1     0.023   4.2e+02      48      75 ..     467     494 ..     465     508 .. 0.84

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 1.9e-06
                 HHHHHHHHHHHTTSB---GHHHHHHHHHHH..HHHHCHHHHHHHHSS-----HHCHHHHH CS
        TetR  68 qlrellqelveagllqaddeeleaLadniw..lvatyWlsfqraraeskalteaalrrgv 125
                  lr+llq++ + +    ++ee ++L+d+++  ++a yW+s+ ++ +++ ++ +++ + ++
  KOO22348.1 131 LLRRLLQRFTDRNQHLTTEEEAQSLVDQLNviMLAQYWISQAFKLEHDVENPTRKPYAVA 190
                 5899*********999**********9776226679****99977777777666665554 PP

  == domain 2  score: 0.6 bits;  conditional E-value: 0.023
                 HHC-HHHHHHHHHHHHHHHHHHHHHHHH CS
        TetR  48 lsrnpeLakryrqlleelqaqlrellqe 75 
                 l++n++++  +r+l+ e +++lrel+++
  KOO22348.1 467 LAENDTIKDTFRALFTEDRRRLRELIRQ 494
                 5678899999999999999999988875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (706 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       513  (0.0286129); expected 358.6 (0.02)
Passed bias filter:                      344  (0.0191868); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.56u 0.26s 00:00:00.82 Elapsed: 00:00:00.43
# Mc/sec: 4915.56
//
Query:       KOO22349.1  [L=1817]
Description: myb domain-containing protein, partial [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.7e-57  193.6   0.0    6.2e-57  192.9   0.0    1.3  1  SNF2_N          SNF2 family N-terminal domain
    6.4e-33  113.9   0.0    1.7e-32  112.5   0.0    1.7  2  DUF3578         Domain of unknown function (DUF3578)
    4.6e-17   62.4   0.0      9e-17   61.4   0.0    1.5  1  Helicase_C      Helicase conserved C-terminal domain
    6.2e-12   45.2   0.0    2.3e-07   30.6   0.0    3.4  3  Chromo          Chromo (CHRromatin Organisation MOdifier) dom
    2.6e-09   36.8   4.9    5.7e-09   35.7   4.9    1.6  1  PHD             PHD-finger
    8.9e-08   32.3   0.0    5.6e-07   29.7   0.0    2.4  3  ResIII          Type III restriction enzyme, res subunit
    7.2e-05   22.1   0.1    0.00022   20.5   0.0    1.8  1  HDA2-3          Class II histone deacetylase complex subunits
    0.00016   21.5   0.0     0.0019   18.0   0.0    2.3  1  DEAD            DEAD/DEAH box helicase
    0.00065   19.4   0.0     0.0019   17.9   0.0    1.7  2  SWI2_SNF2       SWI2/SNF2 ATPase
  ------ inclusion threshold ------
       0.16   12.2   0.0        1.3    9.3   0.0    2.5  2  AAA_22          AAA domain
        2.3    8.6   5.4        6.7    7.1   5.4    1.9  1  zf-RING_2       Ring finger domain
        2.9    8.2   4.4          8    6.8   4.4    1.8  1  zf-rbx1         RING-H2 zinc finger domain


Domain annotation for each model (and alignments):
>> SNF2_N  SNF2 family N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  192.9   0.0   4.2e-60   6.2e-57      51     349 ..     502     795 ..     496     796 .. 0.90

  Alignments for each domain:
  == domain 1  score: 192.9 bits;  conditional E-value: 4.2e-60
                 HHHTT--EEE---TTS--HHHHHHHHH...HHTTTS---.......S-EEEE--HHHHHHHHHHHHHH-TTS-EEE--SSHHHH............... CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx............... RF
      SNF2_N  51 akqsvrGGiLaDemGLGKTvqvlalilaqrakeekdkekkrkdtlagptLivvPaslldqWeneierhvsssalrvlvyggqkk............... 134
                 ++++ r  iL DemGLGKT q+++++   r            ++++gp+L+vvP s+l +W++e+++++s +++  +  ++  +               
  KOO22349.1 502 NYAQGRSVILGDEMGLGKTAQAVCMLQCVRM---L-------HNAQGPVLVVVPLSTLPHWTRELAEWTSLDTVVFYGNKDA-Ravlvqyewgfppsgv 589
                 57789999*******************4444...2.......34569*************************9855555554.36************** PP

                 ...........-----------------EEEE-HHHHHHHT......TTS-S-S-SEEEES-GGGT--TTSHHHHHHHH---S-EEEE-S--SSS-HHH CS
                 ...........xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
      SNF2_N 135 ...........mkkkntkvapklladydvvittYdvlsreaelqkkrsvlkqvewkrvvlDEghtlknstskaaeavskLstsnrwiltGTPiqnsled 222
                            +    ++  pk+l ++dv++ttY++l  +       +vlk v+w+++++DE+h+lkn ++ka  a+++L+   ++ ltGTP+qn +++
  KOO22349.1 590 egggrggggggR--GGRRPTPKQLPKFDVCVTTYEMLTANL------EVLKPVRWEYMIVDEAHRLKNRDAKALLALRELDCPVKLALTGTPLQNHVAE 680
                 ********9742..335778******************555......9*************************************************** PP

                 HHHHHHHH-TTTT--HHHHHHHTHHHHHHHHHHHHHHHHTT-STTEE---GGGT--S---EEEEEEEEE--HHHHHHHH.................... CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
      SNF2_N 223 lygLlkfLreepfgekqtfdkllqrpieaqaekgrsrLlqllqrlmlrrakkdveknlPpkteeiiflklskverksYnrllevlrkkalakllkrsea 321
                 l+++l+fL+++ f+e + f +++ +       ++++ L ++l++++lrr+k+dv+  l p +e +i++++++ +++ Y     +  +  +++ll  sea
  KOO22349.1 681 LWSMLNFLEPDTFEELDDFLDQYGDMQS---AAQVQGLTEVLRPYLLRRTKADVDLGLTPMEETLIRVEITNFQKRCYR----AILERNRSVLLRGSEA 772
                 ***************9999998766555...899*********************************************....5566667788888888 PP

                 HHHHHH-HHH-HHHHHHHHHHHHH---X CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
      SNF2_N 322 alkssskskekilelllelrqacnhpql 349
                 +    s     + +  ++lr +cnhp l
  KOO22349.1 773 SGAGPS-----FNNVSMQLRHCCNHPFL 795
                 888888.....9999**********987 PP

>> DUF3578  Domain of unknown function (DUF3578)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.6       1.2   1.8e+03     100     132 ..    1609    1642 ..    1581    1652 .. 0.58
   2 !  112.5   0.0   1.1e-35   1.7e-32      11     179 ..    1641    1817 .]    1631    1817 .] 0.84

  Alignments for each domain:
  == domain 1  score: -1.7 bits;  conditional E-value: 1.2
     DUF3578  100 kelgkkkekkelkkraeeiree.lkisseekkde 132 
                  ++ + k++k+e+++ ++e r+e l+ ++ee++++
  KOO22349.1 1609 ERAKAKEAKEEAEREKREKRQEtLAREKEERENK 1642
                  3334444444444444444443133344444444 PP

  == domain 2  score: 112.5 bits;  conditional E-value: 1.1e-35
     DUF3578   11 tekfkghd..lakllrkeipealekalkv.kkdkykvkgsvGqGnwaevPWiavldkeittsaqkGvyivYLfsedmegvYLsLnqGvtklekelgk 104 
                  ++k+k++    ++ + k++++  ++++k+   +k+ v++s+G G+wa+vPW+++ d++ tts  +G y++YL+++d  gvYL+L+qG++kl+  +g 
  KOO22349.1 1641 NKKIKEEVtkCMDAIFKKLESLAKREEKLaLGHKLAVRSSMGIGKWARVPWVSICDPAQTTS--SGLYVQYLLQADVAGVYLCLAQGTNKLRAAVGP 1735
                  5555532212556666666666555555447899***********************98876..7******************************** PP

     DUF3578  105 kkekkelkkraeeireelk.......isseekkdesidLkakkklgkgYeagtiaykeYdleelpseeeLeeDLkellevye 179 
                   +++ ++ ++a+ +r++++        +s +++  +idL+a k  g  Ye g+i++++Y+++elp+e+eL   L++ll++y+
  KOO22349.1 1736 AAANVHIGNIASFVRDRCRralgdraRTSGFDLLGRIDLRAPKGHGAPYEMGSIVARYYPRDELPEESELWTHLRQLLQAYQ 1817
                  *****************8755555545666779999999*****************************************96 PP

>> Helicase_C  Helicase conserved C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.4   0.0     6e-20     9e-17       2     111 .]     823     936 ..     822     936 .. 0.90

  Alignments for each domain:
  == domain 1  score: 61.4 bits;  conditional E-value: 6e-20
                 HHHHHHHHH.HHTTTTSEEEEEESSHHHHHH.HHHHHHHTTSTEEEESTTSTHHHHHHHHHHHH...TTSSSEEEESGGGTSSSTSTTESEEEESSSSS CS
  Helicase_C   2 kleallell.kleeeggkilifvntidrlek.vklllekkgikvavlhgelpqnereeileqfn...kgesdvLiatdvaerGidipkvnlVinfdlpr 95 
                 k++ l +ll +l+e+g+++l+f++++  l+   +++ e +g+++ +l+g+ + ++r+++++++    ++++ +L+ t++++ Gi+++ +++Vi++d+++
  KOO22349.1 823 KMLLLDKLLpHLREQGHRVLLFSQFTMLLDLiEEYV-ELRGFSYERLDGSVTGDKRQAAIDRYCapdSDTFLFLLGTRAGGVGINLTAADTVIIYDPDW 920
                 667788888999***************997755555.7779**********************85545566699************************* PP

                 SHHHHHHHHTTSSSTT CS
  Helicase_C  96 nvtsyiqriGRtgRag 111
                 n+++  q+  R++R+g
  KOO22349.1 921 NPQNDLQAQARCHRIG 936
                 **************97 PP

>> Chromo  Chromo (CHRromatin Organisation MOdifier) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.0         3   4.4e+03      32      39 ..       2       9 ..       2      22 .. 0.76
   2 !   10.5   0.0   0.00029      0.44      14      43 ..     262     289 ..     249     303 .. 0.75
   3 !   30.6   0.0   1.6e-10   2.3e-07      18      54 .]     395     428 ..     382     428 .. 0.85

  Alignments for each domain:
  == domain 1  score: -2.3 bits;  conditional E-value: 3
                TEEEEGGG CS
      Chromo 32 ntWEpeen 39
                ++WEpe++
  KOO22349.1  2 DSWEPEDE 9 
                69***986 PP

  == domain 2  score: 10.5 bits;  conditional E-value: 0.00029
                 TEECEEEEEEETTSTGGGTEEEEGGGCSSH CS
      Chromo  14 dgleleYlVKWkglpysentWEpeenlekc 43 
                 d+  leYl+K kg  + ++ W +++++  +
  KOO22349.1 262 DE--LEYLCKFKGRAHIHARWLSADEIVAD 289
                 22..7*******************999876 PP

  == domain 3  score: 30.6 bits;  conditional E-value: 1.6e-10
                 EEEEEEETTSTGGGTEEEEGGGCSSHSHHHHHHHHHH CS
      Chromo  18 leYlVKWkglpysentWEpeenlekcfqelideFkkr 54 
                   Y++KW +l y+ +tWE+ee++      ++ +F++r
  KOO22349.1 395 RRYFIKWLSLTYDMCTWEDEEDVPAT---AVAAFHQR 428
                 79*********************976...69999987 PP

>> PHD  PHD-finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.7   4.9   3.8e-12   5.7e-09       2      51 ..     141     191 ..     140     192 .. 0.90

  Alignments for each domain:
  == domain 1  score: 35.7 bits;  conditional E-value: 3.8e-12
                 BTTTTS.TTSTTSCEEEET..TTSCEEETTTSSSTHSHHSHHSSTBSSTTTHT CS
         PHD   2 CavCkk.ksdeeeelvqCd..gCkrwfHqkClkppleseekpegewlCekCke 51 
                 C  C++ +s  ++el++Cd  +C++++H  Cl+p+l    +p+g+w+C++C++
  KOO22349.1 141 CVKCQEsHSYPGNELLLCDgdDCGSAYHLHCLRPKLL--AVPKGDWYCPSCSS 191
                 99****77777*******7437**************9..99999*******86 PP

>> ResIII  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.7   0.0   3.7e-10   5.6e-07       3     169 ..     487     673 ..     485     675 .. 0.72
   2 ?   -3.4   0.0       5.7   8.6e+03      35      96 ..     821     879 ..     819     888 .. 0.74
   3 ?   -4.2   1.5       9.6   1.4e+04      76     103 ..    1622    1641 ..    1594    1673 .. 0.42

  Alignments for each domain:
  == domain 1  score: 29.7 bits;  conditional E-value: 3.7e-10
                 EE-HHHHHHHHHHT......TTSEEEEEESTTSTHH...HHHHHHHHHH-S.....-EEEEESSHHHHHHHHHHGGGGTGG..............GEEE CS
      ResIII   3 elreyQeeaienlleklkskrdkrglikmaTGtGKT...lvaaklierllkkgkeekflflvprkslleqtleefkkflsea.yke.........igkk 88 
                 +lr+yQ + ++ l+ ++   + + +++  + G GKT   +++++ ++ l+++++   +l++vp  +l   t+e +++++s + + +             
  KOO22349.1 487 SLRSYQLDGLRWLRHNY--AQGRSVILGDEMGLGKTaqaVCMLQCVRMLHNAQG--PVLVVVPLSTLPHWTRE-LAEWTSLDtVVFygnkdaravL--- 577
                 68999999999999888..589999999********554477888999999877..9******9999877763.3333332202221122222330... PP

                 ESSS-B--...................................-SEEEEEHHHHHHTH........HHHTTT-SEEEEETGGGTTS.TTTHHH..HHT- CS
      ResIII  89 vsgdkkka............................kekdstnkkilvttiqsldadseeeeeeseellrdrfdviiiDEaHrlgakkswrei..lekf 157
                                                     + k+  + +++vtt+++l+a++       e l++ r +++i+DEaHrl+  +  +++  l+ +
  KOO22349.1 578 -------VqyewgfppsgvegggrggggggrggrrpTPKQLPKFDVCVTTYEMLTANL-------EVLKPVRWEYMIVDEAHRLKNRD-AKALlaLREL 661
                 .......133444444444555555555555665566788899***************.......999******************54.4443249999 PP

                 --SEEEEEESS- CS
      ResIII 158 keavllglTATp 169
                 +  v+l+lT+Tp
  KOO22349.1 662 DCPVKLALTGTP 673
                 99*********9 PP

  == domain 2  score: -3.4 bits;  conditional E-value: 5.7
                 STHHHHHHHHHHHH-S.....-EEEEESSHHHHHHHHHHGGGGTGG....GEEEESSS-B-- CS
      ResIII  35 tGKTlvaaklierllkkgkeekflflvprkslleqtleefkkflseaykeigkkvsgdkkka 96 
                 +GK l++ kl  +l+++g+  ++l++ + + ll  ++ee+ ++    y++  ++v+gdk++a
  KOO22349.1 821 SGKMLLLDKLLPHLREQGH--RVLLFSQFTMLL-DLIEEYVELRGFSYERLDGSVTGDKRQA 879
                 5777777778888888877..677666665555.5777888888888888999999998876 PP

  == domain 3  score: -4.2 bits;  conditional E-value: 9.6
                  GGTGG....GEEEESSS-B--............ CS
      ResIII   76 kflseaykeigkkvsgdkkka.....kekdstn 103 
                  + + e++             +     ++++++n
  KOO22349.1 1622 REKREKR-------------QetlarEKEEREN 1641
                  1111111.............1222221222222 PP

>> HDA2-3  Class II histone deacetylase complex subunits 2 and 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.5   0.0   1.4e-07   0.00022      11     246 ..     746     959 ..     740     971 .. 0.76

  Alignments for each domain:
  == domain 1  score: 20.5 bits;  conditional E-value: 1.4e-07
                 ---HHHHHHHHHHHHHTHHHHHHHHHSTTT--HHHH.HHHHHHHH.HHHHHHH-GGGT--TT--S-S-STTHHHHH...HHT-HHHHHHHHHHHHHTTS CS
      HDA2-3  11 pltelqkelteqivslhyedllkyvetsdsqeklslsikslticlenlslvanHPsLLvdHympkklllkelpekl...aetSgKFkvlndlvnliier 106
                  +t++qk  +  i++  ++ ll+ +e s    +     + +++   +l+   nHP L+   +    l  ++ + +l   +  SgK+ +l +l+  + e+
  KOO22349.1 746 EITNFQKRCYRAILERNRSVLLRGSEASGAGPSF----NNVSM---QLRHCCNHPFLIKGVVEAEGLEGADNATWLdnlIAASGKMLLLDKLLPHLREQ 837
                 5666777777777777777777776665555555....33444...4556669**999888888999999999885222789**************999 PP

                 S....EEEEEEE-STHHHHHHHHHHTTSSSEEEESSS--S--S---S-..................-SEEEEEEESS---TTTS--TT-S-EEEEEE-S CS
      HDA2-3 107 krksslnvlvvakskkeldLiEalllGkklkikrysgeklydekkkkskdtkknsrktkeklkkkihsltihllsttrqltkdksllenikfdliiafD 205
                        vl+ ++    ldLiE ++  ++++++r++g  + ++k++ + d                 s+t+++l  tr         + + +d +i  D
  KOO22349.1 838 G----HRVLLFSQFTMLLDLIEEYVELRGFSYERLDGS-VTGDKRQAAIDR-----------YCAPDSDTFLFLLGTRAGGV---GINLTAADTVIIYD 917
                 9....99****************************996.667777777233...........33445689999999988744...46677889999999 PP

                 ST--TTSHHHHHHH--------.--EEEEEETTSHHHHHHHH CS
      HDA2-3 206 ssvdtsspsveslrtqnrkknk.lpiirlvpinSieHvkLcf 246
                 ++ +++++   + r ++  + k + i+rlv+ ++ e   L  
  KOO22349.1 918 PDWNPQNDLQAQARCHRIGQTKlVRIYRLVTRDTYEMHLLDA 959
                 999999999999998887665558899999999998766655 PP

>> DEAD  DEAD/DEAH box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.0   0.0   1.3e-06    0.0019      12     139 ..     504     653 ..     496     673 .. 0.68

  Alignments for each domain:
  == domain 1  score: 18.0 bits;  conditional E-value: 1.3e-06
                 HTTCEEEEEESTTSSHHHHHHHHHHHHHHHSTTSTS-EEEEEES.......SHHHHHHHHHHHHHHTTTSTSEEEEE.ET.T................. CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.......xxxxxxxxxxxxxxxxxxxxxxxxxx.xx.x................. RF
        DEAD  12 lgggdvlvaaeTGsGKTlaflipvlqivyetkgktgpkaliveP.......treLaeqtlnnlkkfkkyidlrvlli.ig.g................. 84 
                  +g++v++  e G GKT+ + + +lq+v  + ++ +  +l+v+P       treLae t  ++  f  + d r++l+ ++ g                 
  KOO22349.1 504 AQGRSVILGDEMGLGKTAQA-VCMLQCVR-MLHNAQGPVLVVVPlstlphwTRELAEWTSLDTVVFYGNKDARAVLVqYEwGfppsgvegggrgggggg 600
                 5899*************874.55667773.345666689999994444444456666555555555554454444332222133333444455555555 PP

                 .SSHHHHHHHHHTTCSEEEEEHHHHHHHHHCTSSHCTTEEEEEEETHHHHHHTTTH CS
                 .xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD  85 .vaardqlskldngvdivvgtpgrlddllstgklnlsqvrflVlDEadrlldqgfs 139
                    +r   ++l  + d+ v+t ++l   l+   l+  + +++++DEa+rl + + +
  KOO22349.1 601 rGGRRPTPKQL-PKFDVCVTTYEMLTANLE--VLKPVRWEYMIVDEAHRLKNRDAK 653
                 56667777777.889************886..444677789*********988655 PP

>> SWI2_SNF2  SWI2/SNF2 ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.1   0.0       6.8     1e+04      28      55 ..     516     544 ..     511     544 .. 0.76
   2 !   17.9   0.0   1.2e-06    0.0019     113     182 ..     628     710 ..     609     733 .. 0.76

  Alignments for each domain:
  == domain 1  score: -4.1 bits;  conditional E-value: 6.8
   SWI2_SNF2  28 GSGKsltmvflakklle.eelknpkvvvv 55 
                 G GK+ + v++ + +++ ++ + p +vvv
  KOO22349.1 516 GLGKTAQAVCMLQCVRMlHNAQGPVLVVV 544
                 88**********99999445555555554 PP

  == domain 2  score: 17.9 bits;  conditional E-value: 1.2e-06
   SWI2_SNF2 113 levlsereniivlvDEaHRsqygelakklr.kalpnaafigFTGTPilkkd...........kktkevFgeyidkY.tikeav 182
                 levl+  +  +++vDEaHR +  + ++ l  + l   + +++TGTP++++             +t e+ ++++d+Y +++ a 
  KOO22349.1 628 LEVLKPVRWEYMIVDEAHRLKNRDAKALLAlRELDCPVKLALTGTPLQNHVaelwsmlnflePDTFEELDDFLDQYgDMQSAA 710
                 566777777789***********99998863789999***********95444566666665778888899999995566665 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3   0.0   0.00088       1.3      93     131 ..     637     673 ..     619     677 .. 0.72
   2 ?   -1.6   0.0       2.1   3.1e+03      31      70 ..    1661    1719 ..    1649    1740 .. 0.70

  Alignments for each domain:
  == domain 1  score: 9.3 bits;  conditional E-value: 0.00088
      AAA_22  93 elliiDEaqhlrseealeeLrsllnlsrkgvqliLvGtp 131
                 e +i+DEa++l +++  + L  l +  +++v+l L Gtp
  KOO22349.1 637 EYMIVDEAHRL-KNRDAKALLALRE-LDCPVKLALTGTP 673
                 668********.6444444444444.478********99 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 2.1
      AAA_22   31 eeakaee...................erpevvfvtlpsstsskdllrellralglelka 70  
                    ak ee                   +r++ v+++ p++t+s+ l+ + l + ++ + +
  KOO22349.1 1661 SLAKREEklalghklavrssmgigkwARVPWVSICDPAQTTSSGLYVQYLLQADVAGVY 1719
                  44444444445666777777777888899999*************99988887776655 PP

>> zf-RING_2  Ring finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.1   5.4    0.0045       6.7       3      43 ..     141     189 ..     139     190 .. 0.72

  Alignments for each domain:
  == domain 1  score: 7.1 bits;  conditional E-value: 0.0045
   zf-RING_2   3 CpICleel.ssadsvlll...pCgHvfhreClerwlrssst....CPlC 43 
                 C+ C+e+   +++++ll+   +Cg  +h +Cl+  l   ++    CP C
  KOO22349.1 141 CVKCQESHsYPGNELLLCdgdDCGSAYHLHCLRPKLLAVPKgdwyCPSC 189
                 8888766634555555442336**********99777777778****** PP

>> zf-rbx1  RING-H2 zinc finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.8   4.4    0.0053         8      11      54 ..     138     189 ..     134     190 .. 0.74

  Alignments for each domain:
  == domain 1  score: 6.8 bits;  conditional E-value: 0.0053
     zf-rbx1  11 eeacieckapgdee...cpvvlG.eCgHaFHlhCiskWlkt....rkvCPlc 54 
                 ++ c++c+++++       +  G  Cg a+HlhC++  l         CP c
  KOO22349.1 138 HDLCVKCQESHSYPgneLLLCDGdDCGSAYHLHCLRPKLLAvpkgDWYCPSC 189
                 5789999888776665555555558**********98887767666678888 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1817 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2099  (0.117073); expected 358.6 (0.02)
Passed bias filter:                      900  (0.050198); expected 358.6 (0.02)
Passed Vit filter:                       250  (0.0139439); expected 17.9 (0.001)
Passed Fwd filter:                        63  (0.00351386); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 1.78u 0.38s 00:00:02.16 Elapsed: 00:00:00.56
# Mc/sec: 9713.52
//
Query:       KOO22350.1  [L=340]
Description: hypothetical protein Ctob_007681 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.7e-10   39.5  11.9    7.4e-06   25.8   0.5    3.7  3  His_Phos_1  Histidine phosphatase superfamily (branch 1)
  ------ inclusion threshold ------
      0.044   13.6   0.0       0.08   12.7   0.0    1.4  1  GRDA        Glycine reductase complex selenoprotein A
      0.063   13.8   0.1       0.12   12.9   0.1    1.4  1  DUF2418     Protein of unknown function (DUF2418)


Domain annotation for each model (and alignments):
>> His_Phos_1  Histidine phosphatase superfamily (branch 1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.3   0.6      0.12   7.3e+02      54     113 ..      11      66 ..       7      76 .. 0.69
   2 !   18.4   0.4   2.2e-07    0.0013      21      65 ..     102     163 ..      83     171 .. 0.83
   3 !   25.8   0.5   1.2e-09   7.4e-06      71     181 ..     200     317 ..     184     324 .. 0.70

  Alignments for each domain:
  == domain 1  score: -0.3 bits;  conditional E-value: 0.12
                 HHHHHHHHHHHHCTT--EEE-GGGS----GGGTT-B.HHHHHH..HSHHHHHHHHH-GGG CS
  His_Phos_1  54 kRarqTaeliaealglpveldegLrEidfGdweglttaeiaeeypeeleawlrdpadvrp 113
                 kR +q a+ +++    + +++++L+   f ++e++  + + eey+++ +a +++p  +++
  KOO22350.1  11 KRMQQLAAYALR----QAKHEQALEQARFEEYEKHFVQPATEEYENRSQAGQQSPTAAAA 66 
                 566666666654....67788888888888888887788888887777777777765554 PP

  == domain 2  score: 18.4 bits;  conditional E-value: 2.2e-07
                 ----B-HHHHHHHHHHHHHHTT..S---EE.................EE-SSHHHHHHHHHHHH CS
  His_Phos_1  21 tdvpLteeGreqAealaerlag..epidai.................ysSplkRarqTaeliae 65 
                  d pL+ +GreqAe la++la+     + +                 ++Spl Ra qT+ ++++
  KOO22350.1 102 VDHPLNMLGREQAEGLAQKLAQaaS--APAadseaamlrdlcgakliLCSPLTRALQTCLIALG 163
                 6889****************99642..333357888999999***99***********977665 PP

  == domain 3  score: 25.8 bits;  conditional E-value: 1.2e-09
                 EEE-GGGS----GGGTT-B.HHHHHH..HSHHHHHHHHH-GGG-BS-BHHHHHHHHHHHHHHHHHHTTTSEEEEEE-HHHHHHHHHHHHT--G.....G CS
  His_Phos_1  71 veldegLrEidfGdweglttaeiaeeypeeleawlrdpadvrppggEsledvaaRvaaaleelaarhegetvlvVsHggvirallarllglpl.....e 164
                  e++++L+ +    +eg   a  ++    ele+ + ++ +   ++ Es  +v++R+a++++++  + e+ t+++V H + ir ll+++l+ ++     e
  KOO22350.1 200 AEVRARLMQTTAELYEGDADAASRAVGGIELEDLEVRQRWWCTSPAESELEVHQRLAEFVRQIQYASEE-TIVLVGHSHWIRELLREYLHESVgrrdpE 297
                 5566666666666677776666666555566666666666666779********************997.5***************9996554000003 PP

                 GGGGB--...-TT-EEEEEE CS
  His_Phos_1 165 elrrlel...dnaslsvlef 181
                 +++rl+    +n+++ +l f
  KOO22350.1 298 FAKRLASrklSNCGVARLAF 317
                 33333335556666666655 PP

>> GRDA  Glycine reductase complex selenoprotein A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   1.3e-05      0.08      39     102 ..     239     307 ..     223     321 .. 0.85

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 1.3e-05
        GRDA  39 fvctaaGamdlenqkrvkelae..kfgaenvvvllGaaeaea...aglaaetvtaGdptfaGplagvql 102
                 + ct+    +le  +r+ e+    ++++e+ +vl+G ++       +   e+v   dp fa  la+ +l
  KOO22350.1 239 WWCTSPAESELEVHQRLAEFVRqiQYASEETIVLVGHSHWIRellREYLHESVGRRDPEFAKRLASRKL 307
                 67*****************9873369***********98654111466789*************98877 PP

>> DUF2418  Protein of unknown function (DUF2418)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.1     2e-05      0.12      61      87 ..      22      48 ..      10      54 .. 0.89

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 2e-05
     DUF2418 61 qqikDkkiiqkevleEYnekfVkPrln 87
                +q+k ++ + ++ +eEY++ fV+P ++
  KOO22350.1 22 RQAKHEQALEQARFEEYEKHFVQPATE 48
                6899********************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (340 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       588  (0.032796); expected 358.6 (0.02)
Passed bias filter:                      371  (0.0206927); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.46u 0.27s 00:00:00.73 Elapsed: 00:00:00.42
# Mc/sec: 2439.44
//
Query:       KOO22351.1  [L=163]
Description: hypothetical protein Ctob_007682 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    0.00053   19.3   0.0     0.0022   17.2   0.0    1.8  2  DUF4336   Domain of unknown function (DUF4336)


Domain annotation for each model (and alignments):
>> DUF4336  Domain of unknown function (DUF4336)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   0.0   1.2e-07    0.0022     134     163 ..      54      83 ..      19     119 .. 0.81
   2 ?    0.4   0.0     0.017     3e+02     284     302 ..     129     147 ..     106     160 .. 0.74

  Alignments for each domain:
  == domain 1  score: 17.2 bits;  conditional E-value: 1.2e-07
     DUF4336 134 plelglgkfaevaffhkasktllvtDavvs 163
                 pl+lg+  f+ev+f+h +s+tl+vtD   +
  KOO22351.1  54 PLSLGVPFFNEVVFCHTPSRTLIVTDLWWN 83 
                 56777778******************8665 PP

  == domain 2  score: 0.4 bits;  conditional E-value: 0.017
     DUF4336 284 wvdkvakwkferiipaHfd 302
                   +++ +w  + i p+H +
  KOO22351.1 129 SYETILAWTWNYIAPCHGE 147
                 4578889999******965 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (163 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       302  (0.0168442); expected 358.6 (0.02)
Passed bias filter:                      276  (0.0153941); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.21s 00:00:00.61 Elapsed: 00:00:00.38
# Mc/sec: 1274.49
//
Query:       KOO22352.1  [L=608]
Description: protein phosphatase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.2e-33  116.0   0.0      4e-33  115.1   0.0    1.4  1  PP2C      Protein phosphatase 2C


Domain annotation for each model (and alignments):
>> PP2C  Protein phosphatase 2C
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  115.1   0.0   2.3e-37     4e-33      15     250 ..     315     577 ..     302     584 .. 0.81

  Alignments for each domain:
  == domain 1  score: 115.1 bits;  conditional E-value: 2.3e-37
                 HHEEEECCCCTCTTCCCCCCEEEEEEEEESSSHHHHHHHHHHHHHHHHHHHCHTTH...........HHHHHHHHHHHHHHHHHHHH...HHHH.C.HC CS
        PP2C  15 medahislanlesssgkssvsffavfdghggseaakyarehleeilksqksfeele...........kleqalrksfladtdeelks...skan.t.ep 97 
                 +   +++      + g+++ ++f v dghg  +   + +e l+++  ++ s ++ +            l+q+l ++f a + ++l++   + ++ +   
  KOO22352.1 315 INQDCACIVYP--CAGDERSALFVVLDGHGD-KGDVVSQELLHQL-YERISGSSTKgpswdstlgdvTLSQQLTDAFEA-AHSHLRTylvDGTTgEvPG 408
                 44444444422..47899999********74.4455555666643.344444444446677999*9999**********.5555555558555555467 PP

                 CT-EEEEEEEEEETTEEEEEEESS-EEEEEETTEEE....EECS---STTSHHHHHHHHHTT--EEECCEEETTT..................BSBSB- CS
        PP2C  98 sksGstavvalirgtklyvAnvGDSravLcrkgnak....keltedHkpsdedEreRIeeaggsvsngegrvngs..................LavsRa 174
                  +sG+ av +++r+ +  +A+ GD+rav+++ + ++    +elt dHk ++++E++RIe+agg++ +    v                     L +sR+
  KOO22352.1 409 TTSGAAAVAMVLRQGRVLLAHSGDCRAVMGTHDAEGtlvsVELTHDHKLENPEEKARIEAAGGWIKP--SEVEPYfaparvykdkknrrlgpgLTMSRS 505
                 89****************************************************************6..4444444456888889************** PP

                 EE-GGGTCCCCCCSTSB---EEEEEEE-TT.EEEEEEE-HHHHTTSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHH CS
        PP2C 175 lGDlelkpketeeqlvsaePdvtsvkltee.defliLacdGlwdvlsdqeavdlvrdelekkkspeevaeelvdeai 250
                 lGDl+  +       v+a P+v   +l +  d f++La+dG+w+ ls+ ++v +v   l+ ++ + ++a+ l+ +a 
  KOO22352.1 506 LGDLDADE-----IGVIATPEVAFYSLAKGrDRFIVLASDGVWEFLSSADVVNIVGGFLNRGEPAINAARFLIAKAA 577
                 *******7.....79*********************************************99988888888887765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (608 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       386  (0.0215294); expected 358.6 (0.02)
Passed bias filter:                      318  (0.0177366); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.51u 0.25s 00:00:00.76 Elapsed: 00:00:00.39
# Mc/sec: 4713.70
//
Query:       KOO22353.1  [L=855]
Description: cys-loop ligand-gated ionic channel [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    7.4e-17   61.6   0.0    1.4e-16   60.8   0.0    1.3  1  Methyltransf_16  Lysine methyltransferase
    5.8e-06   26.5   1.7    5.8e-06   26.5   1.7    2.4  3  Neur_chan_memb   Neurotransmitter-gated ion-channel transmemb
  ------ inclusion threshold ------
      0.036   13.5   0.0      0.069   12.5   0.0    1.3  1  TehB             Tellurite resistance protein TehB
       0.14   12.0   0.0       0.31   10.8   0.0    1.6  1  Methyltransf_23  Methyltransferase domain


Domain annotation for each model (and alignments):
>> Methyltransf_16  Lysine methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.8   0.0     3e-20   1.4e-16      18     165 ..     643     782 ..     632     790 .. 0.84

  Alignments for each domain:
  == domain 1  score: 60.8 bits;  conditional E-value: 3e-20
  Methyltransf_16  18 grkvWdaavvlvkylekklakelganelsklsvlELGsGtGlvGlavaellpeakviltDleellellkknielnkn.alkskvkvevLdWgee 110
                      + kvW +a  l+ yl  +      an+ls+  ++E+G G+G+  + +a+   + +v++tDl+ ll+l+  n+ +n + a   + ++ +L Wg +
       KOO22353.1 643 ASKVWASAHRLCRYLDDA------ANDLSPGVAVEVGCGCGVPSMLLARR--GWHVTMTDLPWLLPLVDANVSANFErADPRRPTIAALRWGCQ 728
                      579*************94......6899*********************9..**********************987566778899*****964 PP

  Methyltransf_16 111 lee.dllekeevDlilaaDcvYledslelLvkvLkellkkeskvlvaykkrreaek 165
                           l + ++  l+l aD++Y+e+ +++L+++L++l       l+a+++r+    
       KOO22353.1 729 EDAiALRSLRRPSLVLGADITYFEEDFDALLTSLEHLNGLR--TLIAVQHRNGCHL 782
                      4221233445669************************9998..5666666665555 PP

>> Neur_chan_memb  Neurotransmitter-gated ion-channel transmembrane region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.5   1.7   1.3e-09   5.8e-06       7      79 ..     276     351 ..     274     356 .. 0.92
   2 ?   -1.4   0.0      0.46   2.1e+03     214     236 ..     358     380 ..     354     382 .. 0.89
   3 ?   -0.7   0.2      0.28   1.2e+03     102     159 ..     455     508 ..     398     558 .. 0.50

  Alignments for each domain:
  == domain 1  score: 26.5 bits;  conditional E-value: 1.3e-09
                     HHHHHHHHHHHHHH...CT.TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-STTHHHHHHHHHHHHHHHHHHHHH CS
  Neur_chan_memb   7 lisiLsvlvFyLps...da.gekvtLgIsvlLslTvfllliteilPktSlvipLigkYLlftmvfvtlsivetvfVl 79 
                     +is Ls  vF +p+   d+ + + ++  + lL+   f ++ ++ lPk+S+ + L+g Y+ +++ f  ++ ve + + 
      KOO22353.1 276 MISTLSLGVFGVPAsdgDClATRSSIVLTLLLTAIAFKFVFADALPKVSYQTVLDG-YMNTCFFFLAAVFVENALIS 351
                     799999999999976668999***********************************.***********999988775 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 0.46
                     HHHHHHHHHHHHHHHHHHHHHHH CS
  Neur_chan_memb 214 vamviDriflwifiivfllgtlv 236
                      a++iD +f + +i++ ll + v
      KOO22353.1 358 DAETIDNWFALTYIVLWLLANAV 380
                     5899**************99987 PP

  == domain 3  score: -0.7 bits;  conditional E-value: 0.28
                     HHHHHC--------------.------------------------------------- CS
  Neur_chan_memb 102 klprllfmkrpsevkdnekklssgasseaeelilskskseskkaklseeqgsekastc 159
                     ++pr+ f + ++e ++++    + ++++ e+l++ + + ++ k+   + + ++ +++ 
      KOO22353.1 455 EMPRIAFTNLKAELERAN----EAQATADEQLKSLQREVDLLKKGTLSFNRDRPSTPT 508
                     334444444333333322....233334444444444444333333333333333333 PP

>> TehB  Tellurite resistance protein TehB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   1.5e-05     0.069      24      59 ..     659     694 ..     650     696 .. 0.92

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 1.5e-05
                 HHCCCS-S-EEEEES-TTSHHHHHHHHTT-EEEEEE CS
        TehB  24 eavkivkpgkvldlgcgqgrnslylsllgydvtawd 59 
                 +a++ ++pg ++++gcg g  s+ l+  g++vt  d
  KOO22353.1 659 DAANDLSPGVAVEVGCGCGVPSMLLARRGWHVTMTD 694
                 78999***************************9877 PP

>> Methyltransf_23  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0     7e-05      0.31       8      71 ..     652     710 ..     646     767 .. 0.79

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 7e-05
  Methyltransf_23   8 elsdklerllpklraggrvLdiGcGtGillevlrengfsvtgvDlspeaveiaekakkaqkdqf 71 
                      +l++ l+ ++ ++ ++g  +++GcG G  + +l+++g++vt+ Dl p++ +++   + +++ +f
       KOO22353.1 652 RLCRYLDDAA-NDLSPGVAVEVGCGCGVPSMLLARRGWHVTMTDL-PWLLPLV---DANVSANF 710
                      5667777666.588899**********99999************9.8888775...55555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (855 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       926  (0.0516482); expected 358.6 (0.02)
Passed bias filter:                      701  (0.0390987); expected 358.6 (0.02)
Passed Vit filter:                        76  (0.00423894); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.76u 0.28s 00:00:01.04 Elapsed: 00:00:00.45
# Mc/sec: 5747.07
//
Query:       KOO22354.1  [L=419]
Description: hypothetical protein Ctob_002101 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.31   11.4   3.7       0.65   10.3   0.3    2.4  2  Cornichon  Cornichon protein


Domain annotation for each model (and alignments):
>> Cornichon  Cornichon protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.4   0.3     0.021   3.7e+02      44      74 ..     199     228 ..     189     230 .. 0.68
   2 ?   10.3   0.3   3.7e-05      0.65      49     108 ..     272     331 ..     254     336 .. 0.85

  Alignments for each domain:
  == domain 1  score: 1.4 bits;  conditional E-value: 0.021
   Cornichon  44 plvlpelilhafltllfllsgewilfllnlp 74 
                 +++++++ + +fl +l+ll  +w+ +++ +p
  KOO22354.1 199 WFIMANFGASLFL-ILTLLFSSWLYIAFGIP 228
                 4566677777777.66666677877777665 PP

  == domain 2  score: 10.3 bits;  conditional E-value: 3.7e-05
   Cornichon  49 elilhafltllfllsgewilfllnlpllayniyrvmskqglydpteifnqlkkhkkesmi 108
                 ++ ++   +++fl ++ +i+f+  ++l+a+ i+++ + +g++  +  ++  +  +++ ++
  KOO22354.1 272 QIKIRSWSLVVFLSTIAIITFVGICVLAAWLIWEMDKAKGFLQKIRTMHARSDKERQDLL 331
                 5667788899*************************9999999999998866666666555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (419 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1451  (0.0809303); expected 358.6 (0.02)
Passed bias filter:                      742  (0.0413855); expected 358.6 (0.02)
Passed Vit filter:                        63  (0.00351386); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.59u 0.23s 00:00:00.82 Elapsed: 00:00:00.42
# Mc/sec: 3024.07
//
Query:       KOO22355.1  [L=179]
Description: vacuolar ATP synthase 16 kda proteolipid [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    8.6e-29   99.7  25.3    8.8e-18   64.4   8.9    2.1  2  ATP-synt_C  ATP synthase subunit C


Domain annotation for each model (and alignments):
>> ATP-synt_C  ATP synthase subunit C
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.4   8.4   7.2e-15   1.3e-10       1      60 []      17      81 ..      17      81 .. 0.90
   2 !   64.4   8.9   4.9e-22   8.8e-18       1      60 []     105     164 ..     105     164 .. 0.99

  Alignments for each domain:
  == domain 1  score: 41.4 bits;  conditional E-value: 7.2e-15
                HHHHHHH.GGGHHHHHHHHHHHHHHHHHHHHSG......HHHHHHHHHHHHHHHHHHHHHHHHHHH CS
  ATP-synt_C  1 lgaglavGlsalgsGigiGkagsagiravarnp......klftksliilafaeaialygLivalil 60
                +ga+la++++ +g+++g++k + + + + a+ p      ++ +ks+++++++++ +++gLi+a+i+
  KOO22355.1 17 MGAALALVFGNMGAAYGTWKSAIGLATI-AKLPrnkvqtEMVMKSIMPVILSGVCGIFGLIIAVII 81
                69*******************9998555.5546677999*************************98 PP

  == domain 2  score: 64.4 bits;  conditional E-value: 4.9e-22
                 HHHHHHH.GGGHHHHHHHHHHHHHHHHHHHHSGHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
  ATP-synt_C   1 lgaglavGlsalgsGigiGkagsagiravarnpklftksliilafaeaialygLivalil 60 
                 lgagl vGls l+sG++iG++g+ g++ + r+pkl++++++i +f  a++lygLivali+
  KOO22355.1 105 LGAGLTVGLSNLASGLAIGMCGTCGVQDSCRQPKLYIGMVLIWSFGSALGLYGLIVALII 164
                 7**********************************************************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (179 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       606  (0.0338); expected 358.6 (0.02)
Passed bias filter:                      325  (0.0181271); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.25s 00:00:00.67 Elapsed: 00:00:00.41
# Mc/sec: 1301.12
//
Query:       KOO22356.1  [L=722]
Description: hypothetical protein Ctob_002099 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00048   19.4   9.9      0.002   17.4   9.9    1.9  1  Ion_trans  Ion transport protein
  ------ inclusion threshold ------
       0.89    9.1   6.4        1.7    8.2   6.4    1.4  1  AP1AR      AP-1 complex-associated regulatory protein


Domain annotation for each model (and alignments):
>> Ion_trans  Ion transport protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.4   9.9   2.2e-07     0.002      61     244 ..     220     468 ..     158     469 .. 0.64

  Alignments for each domain:
  == domain 1  score: 17.4 bits;  conditional E-value: 2.2e-07
                 HHHHHCHSHHHHHHHHHHHHHHHHHHHHH............HHHHHHHHHHHHGGGGGGHHHCHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
   Ion_trans  61 ikkrYlrdpwnilDflvvlpsllslvlse............esllllsvlrlfrvlrllklisrleglrtlvtalirsvkdllnvlllllvvlfifali 147
                 i+ ++l+++ n   +++   + l lv +             ++l+++ ++  + +   + ++  + ++ +l  +l++++ dl ++l+++ v+++ f  +
  KOO22356.1 220 IADSWLKSLVNTAHMVMNAAIGLRLVTRIpgfefasaytayQTLVSFDAV--LMCCETFTFMWTSHNFGILAITLVQMMIDLSLFLVFFSVIIVGFCFA 316
                 56666666666666666666666553222333444444322233333333..344555555555555666666999***99999888887777776666 PP

                 HHHHHTTSCCCC............................................................CCSCCSTSSSTTTSSSSSS........ CS
   Ion_trans 148 gvqlfkgklrek............................................................necaktwenpnngntnFdn........ 178
                  v l +     +                                                                              +        
  KOO22356.1 317 LVGLSE-----TagehdllsaatfediksaghtlsgaavaaasvasdsiragitsasasggrrlsvdatdsvD-----------------Rrllsaidm 393
                 666772.....12333466777877777777777777777777766666666655555544444443333330.................144444444 PP

                 ..............HHHHHHHHHHHHTTSSHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
   Ion_trans 179 ..............fftallwlfrlmttegwgdilyatldekskvaliyfvifiilgsflllNlliaviadnfqeltere 244
                                +  ++  f+ m  e   d+l ++  +       ++ ++++l++++l+N+lia+ ad++ ++++++
  KOO22356.1 394 lgggggggggvqtePLALYWQPFWYMYAEFDIDVLRQVPFAL-----PLMWVYVLLANVVLVNMLIAMFADTYTRIKRNA 468
                 444444444444445555555688888898899999999888.....9***************************99876 PP

>> AP1AR  AP-1 complex-associated regulatory protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.2   6.4   0.00019       1.7      64     115 ..      40      91 ..      22     122 .. 0.80

  Alignments for each domain:
  == domain 1  score: 8.2 bits;  conditional E-value: 0.00019
       AP1AR  64 eklqaelaaqeeklrleeealyaaqreaarlakerklkeqkrqrvkervepe 115
                 +k +a l ++ ek rle e   a q+  a +a+ +   e  +qr+ + +++ 
  KOO22356.1  40 KKARAALDVEAEKKRLEVEKESALQKALAEAARAKAKEEWAAQRAAQEARSG 91 
                 577899****************************99999999*988755433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (722 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1437  (0.0801495); expected 358.6 (0.02)
Passed bias filter:                      702  (0.0391544); expected 358.6 (0.02)
Passed Vit filter:                        57  (0.00317921); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.73u 0.28s 00:00:01.01 Elapsed: 00:00:00.45
# Mc/sec: 4842.13
//
Query:       KOO22357.1  [L=473]
Description: hypothetical protein Ctob_002096 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.2e-15   55.2  32.7    5.2e-15   55.2  32.7    2.1  2  MFS_1     Major Facilitator Superfamily


Domain annotation for each model (and alignments):
>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.2  32.7   2.9e-19   5.2e-15      24     344 ..      61     412 ..      28     420 .. 0.75
   2 ?   -0.7  10.5      0.03   5.3e+02     216     295 ..     369     457 ..     344     471 .. 0.68

  Alignments for each domain:
  == domain 1  score: 55.2 bits;  conditional E-value: 2.9e-19
       MFS_1  24 aedlgispseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllllfa....sslwlllvlrvlqGlgagalfpagaaliadwfpkee 118
                  ++l i+ +++g l+++  ++++va l +  +  +fG+r v+l+ l++ a  +l+++ +     s+++++ + vlq++  ++l+pa    i  w  ++ 
  KOO22357.1  61 DKTLDITFTALGGLVGVQDFTSGVAKLSVPIVLRNFGPRIVYLTVLFVGACNTLAIA-SiegdVSITVIFSGTVLQSFVHSWLYPATTMTICGWMDGSV 158
                 3346688888888999999999******************88877777776634444.2356677779999999************************* PP

       MFS_1 119 rgraigllsagfslGailgpllggllasslgWravfyilaivsllafvlfllll...........peepperkrkspkeee...............kgt 191
                  gr ig++++++ + +i+ +l+ g l++ + Wr ++y++ i+++  fv+f++++           p    ++   ++  ++                g 
  KOO22357.1 159 LGRSIGIVAVATKITPIFMALIYGHLLDVGTWRTCYYFASILFASIFVVFFVFMrssatsvgfrmP---AQPTSGKKGNKRggedgpvtapnrpppLGN 254
                 ************************************************877777899999997652...222222222222345778887777777788 PP

       MFS_1 192 gpaplvpawkallkdpvlwillialllfffgfsglltllplylqevlglsglllaglllallalvgailallagrlsdr..lgrrrrlllallllllaa 288
                 +p++l+  + ++   +  w+ll+++ +    + g   +  ly+++ lg + + ++++l+  +a+++++++l++g++ d    g+  + +l+ +l ll +
  KOO22357.1 255 EPSSLRA-LYIISCMRRTWALLLGFTCLV-LLKGSAKFASLYAKQKLGVT-ASQGTTLFTTYAVASVVSGLCGGFVYDAvpEGKVGIGVLMTSLNLLNL 350
                 8888888.888888887787777777775.9999****************.799999999999999999*********933223334444444444444 PP

       MFS_1 289 lglallavt.....ssavllllvlvliGf.glgfvfpsllalasdlappeeagtasglfnta 344
                  g++++ v       + +ll + ++++Gf  +  v+ +++ +a+ + + e+ g+++++f  +
  KOO22357.1 351 SGFIYALVLeqmdfVTMPLLQVYMFIVGFaSVLPVSLPFQIYAMGMGGVEHCGMIVAAFECF 412
                 444444444555555555555599999**888888999999999999999999999888655 PP

  == domain 2  score: -0.7 bits;  conditional E-value: 0.03
       MFS_1 216 lllfffgfsg....lltllplylqevlglsglllaglllallalvgail....allagrlsdr..lgrrrrlllallllllaalglalla 295
                 ll + +++ g    l + lp+     +g++g+   g+++a++ ++++i+     +++g l+d   ++ +  l++ ++ l +a+++l+++ 
  KOO22357.1 369 LLQVYMFIVGfasvLPVSLPF-QIYAMGMGGVEHCGMIVAAFECFALIVeslfDVVIGCLLDQknFSVWLSLNIVFATLGTAFMALFYIL 457
                 333333333301135555555.69999999999999999999999999988888899999977466666666666666666666666654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (473 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       632  (0.0352502); expected 358.6 (0.02)
Passed bias filter:                      275  (0.0153383); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.51u 0.23s 00:00:00.74 Elapsed: 00:00:00.41
# Mc/sec: 3500.91
//
Query:       KOO22358.1  [L=325]
Description: transient receptor potential cation channel subfamily m member 2 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.8e-48  163.9   0.0    6.1e-48  163.5   0.0    1.1  1  LSDAT_euk   SLOG in TRPM
    2.8e-27   95.3   1.0    4.2e-27   94.7   1.0    1.2  1  LSDAT_prok  SLOG in TRPM, prokaryote
  ------ inclusion threshold ------
      0.038   13.8   0.8      0.095   12.5   0.8    1.7  1  IQ          IQ calmodulin-binding motif


Domain annotation for each model (and alignments):
>> LSDAT_euk  SLOG in TRPM
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  163.5   0.0     1e-51   6.1e-48       1     221 [.     100     313 ..     100     323 .. 0.91

  Alignments for each domain:
  == domain 1  score: 163.5 bits;  conditional E-value: 1e-51
   LSDAT_euk   1 akYvrlsvdtkpedilkllekewklelPkLvisvhGGaknFelqpklkkvlrkGLlkaaktTgAWiiTgGvntGvvrhvgdalkelsskskrkvvtiGi 99 
                 a Y+r+s  t+++ + ++lek w+l++P  +isv+G a++ +l+++l++v+ +GL  aa+ T+AWi+TgG+++Gv++ vg+a+++++      v+++G+
  KOO22358.1 100 AYYIRISDTTSSAMLSHFLEKYWRLPRPDVLISVTGSAASLQLTSQLQRVFDRGLASAAAMTNAWIFTGGTDSGVMKLVGEAMHKYG---LVDVPVVGV 195
                 78*********************************************************************************9995...6889***** PP

   LSDAT_euk 100 apwGivenkedligkdv.vveyqtlsnpksklavlnsnHshFllvD..dGt..vgkygaeiklRrklEkaiskqkiatrtkqgvpvvcvvveGGpntik 193
                 apwG +  +++l +k+  ++e    ++ ++ +  ln  H+h +lvD  dG   +  +g+ei lR +lE++ +        ++gvpvv +v++GG  t++
  KOO22358.1 196 APWGAIAGRKELSDKKGqTIEVMYGKTGMDTVGRLNPYHTHQILVDapDGGseATAWGSEIGLRSRLERTYA-------ISKGVPVVQLVIQGGLGTLD 287
                 *************7766355555555779999*************966554123579************998.......679***************** PP

   LSDAT_euk 194 tvleyvrespkvPvvvvdgsGraaDlla 221
                 t + + +     P++++  sG aa  +a
  KOO22358.1 288 TCIASAEL--GSPLLILADSGGAATAIA 313
                 ***99888..99************9888 PP

>> LSDAT_prok  SLOG in TRPM, prokaryote
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   94.7   1.0   7.1e-31   4.2e-27       4     166 ..     131     315 ..     128     322 .. 0.89

  Alignments for each domain:
  == domain 1  score: 94.7 bits;  conditional E-value: 7.1e-31
  LSDAT_prok   4 lvlvGgasgldeeeaarlrkllravlaplaealgavvidgGtdtGvmkllgraraavea.tfpLiGVApegtValpdepak..............tkde 87 
                 + + G+a++l+ ++  +l+++++++la +a  ++a + +gGtd+Gvmkl+g+a ++++   +p++GVAp g +a  +e ++               +  
  KOO22358.1 131 ISVTGSAASLQLTS--QLQRVFDRGLASAAAMTNAWIFTGGTDSGVMKLVGEAMHKYGLvDVPVVGVAPWGAIAGRKELSDkkgqtievmygktgMDTV 227
                 67889999998888..9***************************************995389************887333347999***9998744466 PP

  LSDAT_prok  88 aeLephHthfvLvpg.......erWGdEspwlarlatala..ekkpsvtvlvnGgeitlkdiresvkagrpilvvaGsgrladeiaaa 166
                  +L+p Hth +Lv+        + WG+E  +  rl  + a  ++ p v +++ Gg  tl+   +s + g p+l++a sg++a +ia+ 
  KOO22358.1 228 GRLNPYHTHQILVDApdggseaTAWGSEIGLRSRLERTYAisKGVPVVQLVIQGGLGTLDTCIASAELGSPLLILADSGGAATAIAQF 315
                 79***********98888999999************9999545559999************************************975 PP

>> IQ  IQ calmodulin-binding motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.8   1.6e-05     0.095       1      16 [.      53      68 ..      53      69 .. 0.90

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 1.6e-05
                HHHHHHHHHHHHHHHH CS
          IQ  1 rkaaikIQaawRGyla 16
                r+aai+ Q+++R+ l 
  KOO22358.1 53 REAAIVVQRWYRRQLL 68
                68**********9985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (325 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       387  (0.0215851); expected 358.6 (0.02)
Passed bias filter:                      344  (0.0191868); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.41u 0.22s 00:00:00.63 Elapsed: 00:00:00.36
# Mc/sec: 2740.98
//
Query:       KOO22359.1  [L=474]
Description: 6-phosphogluconolactonase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.3e-38  133.2   0.0    1.4e-33  116.6   0.0    3.0  3  Lactonase  Lactonase, 7-bladed beta-propeller


Domain annotation for each model (and alignments):
>> Lactonase  Lactonase, 7-bladed beta-propeller
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  116.6   0.0     8e-38   1.4e-33       5     228 ..       8     265 ..       4     272 .. 0.81
   2 !   11.7   0.0   6.1e-06      0.11     244     298 ..     339     400 ..     304     403 .. 0.72
   3 ?    0.9   0.0     0.012   2.2e+02     301     342 ..     431     467 ..     429     470 .. 0.75

  Alignments for each domain:
  == domain 1  score: 116.6 bits;  conditional E-value: 8e-38
                 EEGGS......SS.TEEEEEEEETTTS-EE....EEEEEEESS---SEEE..-TTSSE..EEEEET.S.TTTEEEEEEEETTTTEEEEEE....EEE.S CS
   Lactonase   5 Gtytk......geskgiytlkldtetgklt....plelvaelenPsyLal..spdgkt..lYavnetg.eeggvsafaidkdsgeltlln....kvsse 84 
                 Gty +      g++kg+y+lk+d+++ ++t    +++l +  +nPsy+++  ++ +++  +Y+v+e++ + g v+a+++++ +gel   +    +   +
  KOO22359.1   8 GTYGEklghvnGKGKGLYVLKFDRSSLAFTedfgKAQLGDVFKNPSYVTVfrDSVADRldVYVVEESHsDAGFVAALTLNESTGELACNGepirRDLAD 106
                 666666666669**********99977665222167779999********77444444237******9999**************97766333255569 PP

                 SS-EEEEEE-TTSSEEEEEETTTTEEEEEEB.TTSEBESECEEEE.....SST........TT-SSTTEEEEEE-T..TSSEEEEEETTTTEEEEEEE. CS
   Lactonase  85 gaspchlsvdedgkllavAnYsggsvsvfpldadgslkeasqvlkhegsgpnp........erqesphaHsvvldp..dgkfllvpDLGtDrvrvykld 173
                 +a+ ch++v ++g+++++AnY +gsv  ++   dg+l+ ++ ++    +  +p         rqe +haH+v++++  + + +lvpDLG D v    +d
  KOO22359.1 107 AAACCHVTVAPGGSHVLAANYLTGSVVAIARLPDGKLDGTNVQYVDLPPATHPityplpnaARQERAHAHMVHVSAgtKSSTVLVPDLGSDVVWSIPFD 205
                 *************************************999664433222444455555555************997224568***************** PP

                 -TTS-..EEE...EEEEE-STT--EEEEEE-TTSSEEEEEETTTTEEEEEEEE-TTTEEE CS
   Lactonase 174 katgk..lte...pasvklppgsGPRHlaFhpdgkiaYvvnELsstvsvfsydeatgale 228
                 +a+ +  l e   + s ++ +g GPRHla+hp++ ++Yv  EL+s v++f++d + ga++
  KOO22359.1 206 AASLSapLGEpvpSGSHQALAGGGPRHLALHPTEAVCYVCYELTSLVAAFKIDRKSGAIS 265
                 **977775557768889************************************9999765 PP

  == domain 2  score: 11.7 bits;  conditional E-value: 6.1e-06
                 --EEEEEE-TTSSEEEEEETS.............STEEEEEEE-TTT--EEEEEEEE-SSS.--EEEE CS
   Lactonase 244 nsaaeIrlspdgkflyvSnRg.............adsiavfavdeadgtltlveevstegkfPRdfal 298
                 +s+a+I+++pdg+ l+vS+R                  + + vd++    + +  + t g++PRdfa+
  KOO22359.1 339 TSLAAIAVTPDGSQLVVSSRIegepgalsaipltP---SGLFVDAH---DRPIRVTRTLGETPRDFAM 400
                 699******************88855444222111...11223333...3667778899999999986 PP

  == domain 3  score: 0.9 bits;  conditional E-value: 0.012
                 TSSEEEEEETTTTEEEEEEEETTTTEEEEESEEEESSSEEEE CS
   Lactonase 301 sgklllvanqksdnvtvferdaetGkLtelgkdievgepvcv 342
                 +g l lvanq++d+++v+    e G  tel +  +v++pvcv
  KOO22359.1 431 AGMLALVANQNDDKIVVLC---EGGPPTELTT--KVPTPVCV 467
                 577789********99985...5788888854..57777776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (474 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       264  (0.0147247); expected 358.6 (0.02)
Passed bias filter:                      225  (0.0125495); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.26s 00:00:00.72 Elapsed: 00:00:00.42
# Mc/sec: 3411.06
//
Query:       KOO22360.1  [L=343]
Description: hypothetical protein Ctob_002102 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (343 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       225  (0.0125495); expected 358.6 (0.02)
Passed bias filter:                      200  (0.0111551); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.42u 0.23s 00:00:00.65 Elapsed: 00:00:00.38
# Mc/sec: 2719.71
//
Query:       KOO22361.1  [L=510]
Description: lysosomal protective protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
   1.8e-114  383.4   0.0   2.1e-114  383.2   0.0    1.0  1  Peptidase_S10  Serine carboxypeptidase
    5.3e-06   27.2   2.1     0.0017   19.0   2.1    2.3  1  Abhydrolase_6  Alpha/beta hydrolase family


Domain annotation for each model (and alignments):
>> Peptidase_S10  Serine carboxypeptidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  383.2   0.0  2.3e-118  2.1e-114       1     418 [.      27     492 ..      27     493 .. 0.90

  Alignments for each domain:
  == domain 1  score: 383.2 bits;  conditional E-value: 2.3e-118
                    TTCSST-SSEEEEEEEECSTTTTEEEEEEEEE-SSGTTTS-EEEEE--TTTB-THHHHHHTTSSEEEETTTTSEEEE-TT-GGGCSEEEEE--STT CS
  Peptidase_S10   1 PgleetvnfkqysGYldveeeedkslFYwfveseknpeedplvlWLnGGPGCsSldGlleElGPfrvnkdstkkleenpysWnkvanvlfldqPvG 96 
                    Pgl + + f++ sGYl++ +++d++lFYw+ e+  +p+++pl+lWLnGGPGCsSl+G ++ElGPf+v+  +t ++  npys nkvanvlfl+qP+G
     KOO22361.1  27 PGLATSPCFNHSSGYLSTGTSRDTHLFYWYHEAVADPKSKPLLLWLNGGPGCSSLGGTFTELGPFVVQ--KTLNVTFNPYSFNKVANVLFLEQPAG 120
                    78888899************************************************************..689*********************** PP

                    STT-EETTSSGS--SHHHHHHHHHHHHHHHHHHSTCGTTSEEEEEEETTHHHHHHHHHHHHHTHCCH--S...STSEEEEEEEESE-SBHHHHHCC CS
  Peptidase_S10  97 vGFSysntksdvktddeevaedlyefLkkffekfpeyksrdfyitGESYaGhyvPalakeilkknkkekk...kkinLkGlligNglideaeqvns 189
                    vGFSy n  ++    d+ +a ++y++L  ff+ +p ++ r+fy++GESY+GhyvP  +++i  +n + +    ++in+kG+++gNg++d   ++n+
     KOO22361.1 121 VGFSYPNLPAN----DTVTAYETYKALLAFFNLHPDLRGRPFYVMGESYGGHYVPETVAAIQAGNAALAPsapERINIKGFAVGNGYTDWFLDFNA 212
                    ******99775....**************************************************998768889********************** PP

                    HHHHHHHTTSSHHHHHHHHHHHHEET...HHHHHHHHHHHHHHHHHHHHH.HHHHCHCEETTETTSEETTSSEE...................... CS
  Peptidase_S10 190 yvefayehgliseeeyeslkkacekk...eeleqesekcanllekaskva.vekenkglnvynileeccklkae...................... 259
                     v+++ +h+l s++ ++s + ac+++    + ++ + +c ++  +a   a +  + + +++y+i+ ++c   ++                      
     KOO22361.1 213 NVPNTRYHALTSQSLLDSADVACNGSyarCFWQRPDVECPAACGEAVDRAtALARDGSIDIYDIYVDVCLEGQQrlktqafmlleeqqrakqqrhn 308
                    ***********************9999994445555555555444443332356788***********995444578889**************** PP

                    ........................HHHCTTCCCCTTTTTCHHHHHHHHTSHHHHHHTT--...TTSSS--SB-HHHHHHCTCCC-SBCHHHHHHHH CS
  Peptidase_S10 260 ........................lkksstdaqggedpydesyvekylnkkeVrkalhvn...asvkkweecndsvfeqleddisksveeileell 328
                                             ++++t+ ++ +  + ++y+ +yln + V++a++v+    + +kw++c +  +++   +  +++ ++ + + 
     KOO22361.1 309 aqraptaveeeatvdhsgsaldgrGRRTQTTISPIYPTCADAYSAAYLNLPAVQQAIGVRpgtIPGGKWSDCGNVQYDF---NYLSELPRYKQWVA 401
                    ***********************9899999******************************9888889*****9744333...33344555555556 PP

                    HTT-EEEEEEETT-STT-HHHHHHHHHH.TECTTECCSCCCEEEETTTCESEEEEEEEETT....EEEEEETT--SSHHHHSHHHHHHHHHHHHT CS
  Peptidase_S10 329 esglrvliynGdvDlicnvlgteawikk.lelsgkkefrpwevspkkengqvaGyvkeyen....ltfltvkgaGHmvPedkpeealqllerfis 418
                    e++l++liynGd+D+i   +g++awi++ l l+ ++e+++w      ++gqvaGy++ey+     ltfltvkgaGHmvP d+p++al++l+rf++
     KOO22361.1 402 EGELQILIYNGDADYILSHMGNSAWINQgLALNKTREWTKWRG----SDGQVAGYFEEYATagvpLTFLTVKGAGHMVPRDRPKHALDMLTRFLA 492
                    666*************************9**************....5***********444689****************************97 PP

>> Abhydrolase_6  Alpha/beta hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.0   2.1   1.9e-07    0.0017      42     215 ..     129     482 ..      69     484 .. 0.57

  Alignments for each domain:
  == domain 1  score: 19.0 bits;  conditional E-value: 1.9e-07
                    GCS--HHHCHHHHHHHCCTT......TTSEEEEEETCHHHHHHHHHHCC..EE.EEES-..----TTT.......S----TTHHHHHHTT-CCCCH CS
  Abhydrolase_6  42 pppldledladlaalldelaa....gggpvvlvGHSlGGalalaaaplalvvg.vlldppptalpagl.......laaalelllallallrllawl 125
                    p+ +++++++++ all+ +      +g+p++++G S+GG+++ +++++ + +g  +l+p   ++p +        ++ +  ++l ++a+ +  +++
     KOO22361.1 129 PANDTVTAYETYKALLAFFNLhpdlRGRPFYVMGESYGGHYVPETVAAIQ-AGnAALAP---SAPERInikgfavGNGYTDWFLDFNANVPNTRYH 220
                    333455555666666666655666779999**********9999888887.66799999...5555554444444666666666666666666666 PP

                    CCHS-HSCCCCHHH...CCCCHCHCCCGHH.................................................................. CS
  Abhydrolase_6 126 sreplprlfladed...adaawrarlarla.................................................................. 152
                    ++   ++++l+  d      + r+ ++r+                                                                   
     KOO22361.1 221 AL--TSQSLLDSADvacNGSYARCFWQRPDvecpaacgeavdratalardgsidiydiyvdvclegqqrlktqafmlleeqqrakqqrhnaqrapt 314
                    53..33344443332221111111111111222233333444444444555667777777777777777777777777777777777777777777 PP

                    ..........................................................................HHCCHHCHTTCCHHTT-TTGC. CS
  Abhydrolase_6 153 ..........................................................................allaglgllpaaawadlpvpl. 173
                                                                                                        +++++++  ++ 
     KOO22361.1 315 aveeeatvdhsgsaldgrgrrtqttispiyptcadaysaaylnlpavqqaigvrpgtipggkwsdcgnvqydfnY---------LSELPRYKQWVa 401
                    777777777777777777777777777777777777777777777666666666666655555543333333330.........334444444444 PP

                    .....................................E.EEC.TT-CHHHHCHHCCCHSTTEEET.CE...SSS-HHHHSH.H CS
  Abhydrolase_6 174 .....................................l.vlg.geDplvprllerllaqagarlp.vvlpgaGHlphleep.d 215
                                                         +   + g+D  v+ ++e++++ ag+ l   +++gaGH++  ++p +
     KOO22361.1 402 egelqiliyngdadyilshmgnsawinqglalnktreWtK-WrGSDGQVAGYFEEYAT-AGVPLTfLTVKGAGHMVPRDRPkH 482
                    4454443333333322221111111111111111111002.34555577777777777.444444577888888777777755 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (510 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       523  (0.0291706); expected 358.6 (0.02)
Passed bias filter:                      463  (0.0258241); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.54u 0.28s 00:00:00.82 Elapsed: 00:00:00.41
# Mc/sec: 3728.46
//
Query:       KOO22362.1  [L=96]
Description: hypothetical protein Ctob_002104 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (96 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       310  (0.0172904); expected 358.6 (0.02)
Passed bias filter:                      254  (0.014167); expected 358.6 (0.02)
Passed Vit filter:                        12  (0.000669307); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.25s 00:00:00.59 Elapsed: 00:00:00.40
# Mc/sec: 725.01
//
Query:       KOO22363.1  [L=307]
Description: echinoderm microtubule-associated 5 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.1e-10   41.9   2.5    3.7e-06   27.6   0.2    2.8  2  WD40      WD domain, G-beta repeat
  ------ inclusion threshold ------
        6.7    7.3   8.9        1.2    9.7   0.2    3.7  3  PQQ_3     PQQ-like domain


Domain annotation for each model (and alignments):
>> WD40  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.6   0.2   4.2e-10   3.7e-06       4      37 ..      12      52 ..      10      53 .. 0.83
   2 !   13.3   0.2   1.4e-05      0.12       8      37 ..     218     246 ..     213     246 .. 0.89

  Alignments for each domain:
  == domain 1  score: 27.6 bits;  conditional E-value: 4.2e-10
                EEEEESS.SSEEEEEEETTSSEEEE......EETTSEEEEE CS
        WD40  4 lrtltGH.ssvtslafspdgawlas......GsdDgtvriW 37
                +++++GH ++vt++a +p+g ++a+      G+ D ++++W
  KOO22363.1 12 QTVYDGHdCDVTCVALHPSGELVATgqgmnaGGADASIHLW 52
                6789***888**************9554544456******* PP

  == domain 2  score: 13.3 bits;  conditional E-value: 1.4e-05
                 ESS.SSEEEEEEETTSSEEEEEETTSEEEEE CS
        WD40   8 tGH.ssvtslafspdgawlasGsdDgtvriW 37 
                 ++H ++vt+l  ++ g+ +asG+ Dg v++W
  KOO22363.1 218 DAHqGPVTAL--CSTGNAIASGGADGFVYLW 246
                 689888****..8899999************ PP

>> PQQ_3  PQQ-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   0.0       1.8   1.6e+04      19      29 ..      63      73 ..      52      77 .. 0.69
   2 ?    9.7   0.2   0.00013       1.2      11      38 ..     179     207 ..     166     207 .. 0.80
   3 ?   -2.6   4.0         1   8.9e+03      25      34 ..     234     244 ..     214     271 .. 0.61

  Alignments for each domain:
  == domain 1  score: -3.4 bits;  conditional E-value: 1.8
       PQQ_3 19 vdgglvyvgtg 29
                ++ g++ +g g
  KOO22363.1 63 IGKGHLIIGVG 73
                45688888876 PP

  == domain 2  score: 9.7 bits;  conditional E-value: 0.00013
       PQQ_3  11 gpvnssp.avdgglvyvgtgdGtlyAlDa 38 
                 g++  +p  ++ gl ++g++ G+++ +Da
  KOO22363.1 179 GDAFPAPsGAAHGLTFIGSSGGRIFVFDA 207
                 544434456789****************8 PP

  == domain 3  score: -2.6 bits;  conditional E-value: 1
       PQQ_3  25 yvgtg.dGtly 34 
                  +++g dG +y
  KOO22363.1 234 IASGGaDGFVY 244
                 44444455555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (307 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       232  (0.0129399); expected 358.6 (0.02)
Passed bias filter:                      186  (0.0103743); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.41u 0.23s 00:00:00.64 Elapsed: 00:00:00.38
# Mc/sec: 2406.60
//
Query:       KOO22364.1  [L=427]
Description: hypothetical protein Ctob_002106 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.1e-06   26.9   0.3       0.11   12.5   0.0    2.4  2  NUDIX     NUDIX domain
    0.00019   21.8   0.1       0.89    9.8   0.0    2.3  2  Tli4_C    Tle cognate immunity protein 4 C-terminal domain
  ------ inclusion threshold ------
       0.05   13.6   0.1        5.9    6.9   0.0    2.6  2  GUN4_N    ARM-like repeat domain, GUN4-N terminal
      0.058   13.2   0.1         14    5.4   0.0    2.3  2  COP23     Circadian oscillating protein COP23
      0.098   12.8   0.0         27    5.0   0.0    2.5  2  Usg       Usg-like family


Domain annotation for each model (and alignments):
>> NUDIX  NUDIX domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.5   0.0   3.1e-05      0.11      36      99 ..      98     170 ..      64     191 .. 0.60
   2 !   12.2   0.0   3.8e-05      0.14      36      99 ..     324     396 ..     290     418 .. 0.60

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 3.1e-05
                 ECBTTSHHHHHHHHHHHHHHS.EEEEEEEEEEEEEEEEEEEEEEEE..........EEEEEEEEEEEECSGCSST CS
       NUDIX  36 kvepgEtpeeAArREleEEtG.leaellellgrlhylapydgpygd..........eheilyvfleevegelepn 99 
                 k + +Et+ +AA+R ++EE+G +  + ++l ++l  + +y+ + +           +++ l+ ++ +v g ++++
  KOO22364.1  98 KKKRNETADQAAMRAIREELGsV--KGMKLDSVLLRVGTYKNWEEAdvspsyptlsTRYELHQYEVRVRGLPKHP 170
                 556689***************54..33333333333333333222223333334455555566666666666555 PP

  == domain 2  score: 12.2 bits;  conditional E-value: 3.8e-05
                 ECBTTSHHHHHHHHHHHHHHS.EEEEEEEEEEEEEEEEEEEEEEEE..........EEEEEEEEEEEECSGCSST CS
       NUDIX  36 kvepgEtpeeAArREleEEtG.leaellellgrlhylapydgpygd..........eheilyvfleevegelepn 99 
                 k + +Et+ +AA+R ++EE+G +  + ++l ++l  + +y+ + +           +++ l+ ++ +v g ++++
  KOO22364.1 324 KKKRNETADQAAMRAIREELGsV--KGMKLDSVLLRVGTYKNWEEAdvspsyptlsTRYELHQYEVRVRGLPKHP 396
                 556689***************54..33433333333334332222222222233344444455555555544444 PP

>> Tli4_C  Tle cognate immunity protein 4 C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.8   0.0   0.00025      0.91      38     102 ..      77     154 ..      60     182 .. 0.73
   2 !    9.8   0.0   0.00025      0.89      38     102 ..     303     380 ..     286     409 .. 0.73

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.00025
                 EEEEEEEES..S--SS-HHHHHHHHHHHHHSTTEEEEEEEE--BTTB--EEEEEEEEETTEEE..............E CS
      Tli4_C  38 vtfsiesnnaagkeedsllersaeiekalkqakirtlrkgkrqinglegeEvlvkgpeeggkeg.............y 102
                 v ++ +++++++++ + ll+ +++ ++++ qa++r +r++  +++g++ + vl+++ + ++ e+             y
  KOO22364.1  77 VCYEQQMADGRKRQRNVLLAEKKKRNETADQAAMRAIREELGSVKGMKLDSVLLRVGTYKNWEEadvspsyptlstrY 154
                 44455677777899999999999********************************99888766645555555555443 PP

  == domain 2  score: 9.8 bits;  conditional E-value: 0.00025
                 EEEEEEEES..S--SS-HHHHHHHHHHHHHSTTEEEEEEEE--BTTB--EEEEEEEEETTEEE..............E CS
      Tli4_C  38 vtfsiesnnaagkeedsllersaeiekalkqakirtlrkgkrqinglegeEvlvkgpeeggkeg.............y 102
                 v ++ +++++++++ + ll+ +++ ++++ qa++r +r++  +++g++ + vl+++ + ++ e+             y
  KOO22364.1 303 VCYEQQMADGRKRQRNVLLAEKKKRNETADQAAMRAIREELGSVKGMKLDSVLLRVGTYKNWEEadvspsyptlstrY 380
                 44455677777899999999999********************************99888776655555555555443 PP

>> GUN4_N  ARM-like repeat domain, GUN4-N terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.9   0.0    0.0017       5.9      34      66 ..      25      59 ..      21      64 .. 0.77
   2 ?    3.9   0.0     0.015        53      50      66 ..     269     285 ..     260     290 .. 0.78

  Alignments for each domain:
  == domain 1  score: 6.9 bits;  conditional E-value: 0.0017
                TSHHHHHHHHHHHHHHH..SSSS-THHHHHHHHHH CS
      GUN4_N 34 kaGeeGleiLqeFLlks..qeepatlveGkvyqvL 66
                + G+ G +   + L +    e + +lv+Gk+y+ L
  KOO22364.1 25 AWGTRGAKHVEDLLEELqqGEASLQLVDGKIYRNL 59
                56889999999999765214567799*******98 PP

  == domain 2  score: 3.9 bits;  conditional E-value: 0.015
                 HSSSS-THHHHHHHHHH CS
      GUN4_N  50 sqeepatlveGkvyqvL 66 
                 + e + +lv+Gk+y+ L
  KOO22364.1 269 QGEASLQLVDGKIYRNL 285
                 4567789********98 PP

>> COP23  Circadian oscillating protein COP23
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.4   0.0     0.004        14      63     110 ..      65     112 ..      49     128 .. 0.71
   2 ?    5.4   0.0     0.004        14      63     110 ..     291     338 ..     275     354 .. 0.71

  Alignments for each domain:
  == domain 1  score: 5.4 bits;  conditional E-value: 0.004
       COP23  63 ylttgvvngqpviCvttekkgesCnkenlLftLkpgqdpeqvlqqlfd 110
                 ++++  v+gq+ +C+ ++  +++  ++n+L+  k++++ ++  + +  
  KOO22364.1  65 IVRSPEVPGQHLVCYEQQMADGRKRQRNVLLAEKKKRNETADQAAMRA 112
                 467899*********666666555788888888887776655555555 PP

  == domain 2  score: 5.4 bits;  conditional E-value: 0.004
       COP23  63 ylttgvvngqpviCvttekkgesCnkenlLftLkpgqdpeqvlqqlfd 110
                 ++++  v+gq+ +C+ ++  +++  ++n+L+  k++++ ++  + +  
  KOO22364.1 291 IVRSPEVPGQHLVCYEQQMADGRKRQRNVLLAEKKKRNETADQAAMRA 338
                 467899*********666666555788888888887776655555555 PP

>> Usg  Usg-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.0   0.0    0.0076        27      28      43 ..     138     153 ..     130     164 .. 0.83
   2 ?    5.0   0.0    0.0076        27      28      43 ..     364     379 ..     356     390 .. 0.83

  Alignments for each domain:
  == domain 1  score: 5.0 bits;  conditional E-value: 0.0076
         Usg  28 wqdyDlaPefPelkkF 43 
                 w + D+ P++P+l++ 
  KOO22364.1 138 WEEADVSPSYPTLSTR 153
                 99**********9865 PP

  == domain 2  score: 5.0 bits;  conditional E-value: 0.0076
         Usg  28 wqdyDlaPefPelkkF 43 
                 w + D+ P++P+l++ 
  KOO22364.1 364 WEEADVSPSYPTLSTR 379
                 99**********9865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (427 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       554  (0.0308997); expected 358.6 (0.02)
Passed bias filter:                      389  (0.0216967); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.47u 0.21s 00:00:00.68 Elapsed: 00:00:00.37
# Mc/sec: 3451.87
//
Query:       KOO22365.1  [L=280]
Description: gtpase imap family member 4-like protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.4e-20   72.8   0.0    3.2e-20   72.4   0.0    1.1  1  AIG1      AIG1 family
    6.1e-05   23.1   0.0    0.00011   22.2   0.0    1.4  1  MMR_HSR1  50S ribosome-binding GTPase
  ------ inclusion threshold ------
       0.06   12.6   0.0      0.083   12.1   0.0    1.1  1  GBP       Guanylate-binding protein, N-terminal domain


Domain annotation for each model (and alignments):
>> AIG1  AIG1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   72.4   0.0   5.3e-24   3.2e-20       2     206 ..      40     243 ..      39     249 .. 0.88

  Alignments for each domain:
  == domain 1  score: 72.4 bits;  conditional E-value: 5.3e-24
                 EEEEESSTTSSHHHHHHHHHTS.--SS--TTTS---SS-EEEEE...EETTEEEEEEE--SCCCTTCCHHCHHHHHHHHHHHCTT-ESEEEEEEETTB- CS
        AIG1   2 tivlvGktgnGkSaTgNsilgk.kaFesklsaqsvtkkcqkksr...twdgkkinViDTPglfdlsvsadkiskeivrclllseegihalllvlslgrf 96 
                  ivlvG tg GkS+TgN++ g  +aF  +   +s t  + ++     +++  ++ V+DT gl d+   a+++ +  +    l+  gi+++l+v++ grf
  KOO22365.1  40 AIVLVGVTGDGKSSTGNTLCGAlDAFAVSGGLSSETAGVAHRDYlliAEEVVEMRVVDTIGLHDTGLPAEEVMRRFSAFSDLTPSGIDVFLFVVRWGRF 138
                 69*****************998468999988888887777666543345557899******************************************** PP

                 SHHHHHHHHHHHHHHCGGGGGGEEEEEEEGGGGTTCCHHHHHHHHH-HHHHHHHHHTTTSEEEEETTHHHHHHHHHHHHHHHHHHHHHHHHTTTT--B- CS
        AIG1  97 teedekalktlkelFGekilkylivvftrkddleddsledylsksspeaLkevlkecgnRvvlfnnktaskeekeeQvkellelveaivkenggkpytn 195
                   + e+a+ +  +  Ge++l ++ +vft+   l++ +l   l  s+pe+L+++l+++    + ++n ++ ++     +  l ++v+a+ ++n+ ++y+n
  KOO22365.1 139 RPDHEAAVDAFVANCGESALAHTALVFTGC-PLGAAELAAALDASAPESLRRLLEKLPTPPIGIENVSSPERA----RPALHAAVQAVCESNQRRRYSN 232
                 ****************************76.799999******************************333333....3567789*************** PP

                 HHHHHHHHCCH CS
        AIG1 196 elyekikeeae 206
                     +++ +++
  KOO22365.1 233 AALAEARARHA 243
                 98888777665 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.2   0.0   1.9e-08   0.00011       2     101 ..      41     154 ..      40     166 .. 0.63

  Alignments for each domain:
  == domain 1  score: 22.2 bits;  conditional E-value: 1.9e-08
                 EEEEESTTSSHHHHHHHHHTS...TEEESSSTTSSSSEEEEEEE...ETTEEEEEEECGGCSSHHHHHH.HHHHHHHHHHC.....TSEEEEEEETT.. CS
    MMR_HSR1   2 vaivGrpNvGKStLinaltge...kaivsdkpgtTrdinegrvk...lkgkeielvDtpGliegaseek.glgkaflalee.....adlillvvdas.. 86 
                 +++vG +  GKS+  n+l+g+    a  +     T  + ++ +    ++  e+++vDt G +++      ++ ++f a  +      d++l+vv+    
  KOO22365.1  41 IVLVGVTGDGKSSTGNTLCGAldaFAVSGGLSSETAGVAHRDYLliaEEVVEMRVVDTIG-LHDTGLPAeEVMRRFSAFSDltpsgIDVFLFVVRWGrf 138
                 89******************76433444666667776666654333244589********.552333333566666663333345579*****986655 PP

                 ...TTCSHHHHHHHHHHH CS
    MMR_HSR1  87 ...eeklkpldeeleell 101
                    +   +++d  ++++ 
  KOO22365.1 139 rpdH--EAAVDAFVANCG 154
                 5432..244555555555 PP

>> GBP  Guanylate-binding protein, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   1.4e-05     0.083      19      86 ..      36     103 ..      18     118 .. 0.86

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 1.4e-05
                 SBEEEEEEEEBTTSSHHHHHHHHHTBSSSSESSSCSSST-SSEEEESCE-SSSTCEEEEEEEEECBTT CS
         GBP  19 qkvvvvaivGlyRkGksfLlnklarkkkGFslrstvesetkGiliWcephpkkekvalvLlDteGlgD 86 
                  ++ ++ +vG+   Gks   n l + ++ F++ ++ +set G+         +e v + ++Dt Gl D
  KOO22365.1  36 ANLRAIVLVGVTGDGKSSTGNTLCGALDAFAVSGGLSSETAGVAHRDYLLIAEEVVEMRVVDTIGLHD 103
                 55666777888889*****************************9888888888888888889999988 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (280 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       562  (0.0313459); expected 358.6 (0.02)
Passed bias filter:                      393  (0.0219198); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.41u 0.23s 00:00:00.64 Elapsed: 00:00:00.36
# Mc/sec: 2312.41
//
Query:       KOO22366.1  [L=431]
Description: hypothetical protein Ctob_002108 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.5e-15   57.8   0.0      3e-15   56.9   0.0    1.5  1  2OG-FeII_Oxy_3  2OG-Fe(II) oxygenase superfamily
    0.00016   22.2   2.6    0.00051   20.5   2.6    1.9  1  ShK             ShK domain-like
  ------ inclusion threshold ------
      0.061   13.5   0.0       0.13   12.5   0.0    1.4  1  BRCC36_C        BRCC36 C-terminal helical domain


Domain annotation for each model (and alignments):
>> 2OG-FeII_Oxy_3  2OG-Fe(II) oxygenase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.9   0.0   5.1e-19     3e-15       1      96 []     252     358 ..     252     358 .. 0.84

  Alignments for each domain:
  == domain 1  score: 56.9 bits;  conditional E-value: 5.1e-19
                     -EEEEE-TT-EEEEE-SS--..--TT.-.EEEEEEEEE....ET-B--EEE...............---TT-EEEEE-..B-T...........E CS
  2OG-FeII_Oxy_3   1 lqvlrygegqeykpHvDnfe..keegsgqrrltvllyLnekeseeGGelelyekdk.....eavkikpkkgrlvlFesdellp...........H 77 
                     lqv+ry++gq+y+ H+D+++   +++ g r+lt+++yLn  +  +GGe ++ +  +      +  ++p+ g ++l++s    +           H
      KOO22366.1 252 LQVVRYEPGQFYRVHHDQNTavWAPQ-GPRVLTFFMYLN--DVPSGGETAFPQI-PspsgkGHLIVQPRLGHAILWPSV--FDerpmeadertnH 340
                     69***************999964444.89*********8..4579***888333.258887788889***********4..34479********* PP

                     EE--B.-SS-EEEEEEEEE CS
  2OG-FeII_Oxy_3  78 evlpvtkggeRlsltgwir 96 
                     e++pv++ g ++ +++wi+
      KOO22366.1 341 EAMPVHE-GVKFGANMWIH 358
                     *****76.5********98 PP

>> ShK  ShK domain-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.5   2.6   8.5e-08   0.00051       8      38 .]      86     122 ..      82     122 .. 0.89

  Alignments for each domain:
  == domain 1  score: 20.5 bits;  conditional E-value: 8.5e-08
         ShK   8 dCaswaalgfCt......nptyrdlmkeqCpktCgfC 38 
                  C +w ++g+C       + +  ++++eqC++tCg+C
  KOO22366.1  86 MCLAWHKAGYCRaqrrgvSFPSAQQVQEQCARTCGLC 122
                 699*********999996555889************* PP

>> BRCC36_C  BRCC36 C-terminal helical domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   2.1e-05      0.13       6      69 ..     178     243 ..     175     246 .. 0.88

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 2.1e-05
    BRCC36_C   6 veLpeiLfqEEreayekalrsqendllskihnsavyt..kslcalseviavPllqtLesrlkenkn 69 
                   L++ ++ EE +a++++++++   +l+  + + v+t  +  c+  ++ a+Pl++ ++ r++++ n
  KOO22366.1 178 LHLKNFISAEEAAAFQSTCKESFERSLAGDQLNPVRTsfQCWCNFGDCFANPLVHRVTRRINNLTN 243
                 679999**************9999999999999999833466899*****************9987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (431 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       399  (0.0222544); expected 358.6 (0.02)
Passed bias filter:                      291  (0.0162307); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.43u 0.24s 00:00:00.67 Elapsed: 00:00:00.37
# Mc/sec: 3526.90
//
Query:       KOO22367.1  [L=995]
Description: cgmp-dependent protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    4.1e-60  203.4   0.0      7e-60  202.6   0.0    1.4  1  Pkinase        Protein kinase domain
    9.5e-32  108.9   0.2    7.2e-19   67.7   0.1    2.5  2  cNMP_binding   Cyclic nucleotide-binding domain
    3.6e-25   88.7   0.0    5.3e-25   88.2   0.0    1.2  1  Pkinase_Tyr    Protein tyrosine kinase
     0.0016   17.8   0.0     0.0031   16.9   0.0    1.4  1  Kinase-like    Kinase-like
  ------ inclusion threshold ------
       0.19   12.1   2.8        0.5   10.7   2.8    1.7  1  Mto2_bdg       Micro-tubular organiser Mto1 C-term Mto2-bindi
        0.2   10.7   0.0       0.31   10.0   0.0    1.2  1  Seadorna_VP7   Seadornavirus VP7
        0.2   11.1   5.1       0.54    9.8   0.3    2.3  2  DUF2587        Protein of unknown function (DUF2587)
       0.22   10.5   0.1       0.32    9.9   0.1    1.2  1  Haspin_kinase  Haspin like kinase domain


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  202.6   0.0   3.1e-63     7e-60       2     264 .]     657     919 ..     656     919 .. 0.93

  Alignments for each domain:
  == domain 1  score: 202.6 bits;  conditional E-value: 3.1e-63
                 EEEEEEEEESSEEEEEEEETTTTEEEEEEEEECHCHCHHHH....HHHHHHHHHHHHHSCTTB--EEEEEEESSEEEEEEE--TTEBHHHHHHHHSS-- CS
     Pkinase   2 ekleklGeGsfGkVykaveketgkivAvKkikkekakkkke....kkvlrEikilkklkhpnivrlyevfeekdelylvleyveggeladllerkgsls 96 
                 e l++lG+G++G+V  +++++t++ +A+K++ k +  + +     + +lrE ++l++l+hp+iv+l +++ ++++l+l+l ++ gg++ +l+e+ g++ 
  KOO22367.1 657 ELLKQLGSGGYGRVSLVRDTSTKRVYALKRVCKAHLLSHNGmmrcEWLLREKRVLEELEHPFIVTLHDTYADTSNLFLLLGCALGGDMYRLIEKLGQVH 755
                 5689***************************9988777666667799**************************************************** PP

                 HHHHHHHHHHHHHHHHHHHHTTEE-SS-SGGGEEEETTTEEEE-SGTTSEESSSSCSBCTTTSCGGGS-HHHHTTSCBSHHHHHHHHHHHHHHHHHSS- CS
     Pkinase  97 eeeakkiakqilegleylHskgiiHrDlKpeNiLidekgelKitDFGlakelessskltsfvgtseYlAPEvlkeneyskkvDvWslGvilyelltgkp 195
                 e+ a+++a ++  +l+++H +++i+rDlKpeN+L+d++g +K++DFG+ak+++ ++   +++gt++Y APE+l ++++ +++D+W+lG++++e+l+g p
  KOO22367.1 756 EKIARFYAGSLTLALAHIHTHEMIYRDLKPENVLLDTQGYVKLCDFGFAKKVTDRT--YTRCGTPDYTAPEMLLNQGVNQACDWWALGIMIFEMLMGFP 852
                 *****************************************************976..99*************************************** PP

                 STTTSSHHHHHHHHHHTHHHHHHHCTSHH...HHHTTS-HHHHHHHHHHT-SSGCCSTT.....HHHHHTSGGG CS
     Pkinase 196 pfsgekgkekvekeldqlekilkilgetkeklpeaseiseeakdllkkllkkdpkkRlt.....aeellqhpyl 264
                 pfs+ +g++     + + ++i+k  ge ++ +p  s+  +ea+ l++ l++++   Rl+     a+++++h ++
  KOO22367.1 853 PFSDPRGND-----MATYQNITK--GELSKYYPASSTATDEARALIQGLCTVKVAYRLGylkggASDVMAHAWF 919
                 ***777766.....222222333..4788899***************************99999********98 PP

>> cNMP_binding  Cyclic nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.0   0.0   2.8e-13   6.3e-10       2      88 ..     402     483 ..     401     484 .. 0.92
   2 !   67.7   0.1   3.2e-22   7.2e-19       3      86 ..     521     606 ..     519     608 .. 0.94

  Alignments for each domain:
  == domain 1  score: 39.0 bits;  conditional E-value: 2.8e-13
                   EEE-TT-EEE-TTSB-SEEEEEEES-EEEEEEETTS.EEEEEEE-TTEEESHHHHHHTS--SSEEEESSTEEEEEEEHHHHHHHHHH CS
  cNMP_binding   2 rsfkagevifrqGdpadslyivlsGevrvyrlsedgkevvlavlgpGdlfGelalltgeprtatvvAltdsellalprddflellqq 88 
                   + +kag  ++++G+ +d  y v +G++ v+     gke  ++++g   +fGe+al+++  rtat++A+ ds+++ l r  f  +l++
    KOO22367.1 402 VDVKAGVDVVKEGESGDLAYWVDTGSLTVV---VGGKE--VDTIGTDTVFGEVALVYDLARTATIRAKVDSRMWILHRTMFTHILRN 483
                   568999***********************6...56655..9***************99*********************99999875 PP

  == domain 2  score: 67.7 bits;  conditional E-value: 3.2e-22
                   EE-TT-EEE-TTSB-SEEEEEEES-EEEE...EEETTS.EEEEEEE-TTEEESHHHHHHTS--SSEEEESSTEEEEEEEHHHHHHHH CS
  cNMP_binding   3 sfkagevifrqGdpadslyivlsGevrvy...rlsedgkevvlavlgpGdlfGelalltgeprtatvvAltdsellalprddflell 86 
                    + a+ev++++Gd+ads+yi+++G ++v+   ++++dg++ +l+ l++Gd+fGe+all++e+r+atv++ ++ +l++l++++f+ ll
    KOO22367.1 521 VLGANEVVIKEGDEADSMYIIQEGFAAVSqkgASAADGES-LLRDLKAGDYFGERALLNEERRSATVTSTSRIKLMRLDKESFRVLL 606
                   5779************************988888899977.******************************************9887 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   88.2   0.0   2.4e-28   5.3e-25       1     222 [.     656     872 ..     656     902 .. 0.82

  Alignments for each domain:
  == domain 1  score: 88.2 bits;  conditional E-value: 2.4e-28
                  EEEEEEEEEESSEEEEEEEEETTTTSSEEEEEEEEE.STTSSHHHHHHHHHHHHHHHTS-BTTB--EEEEEESSSSEEEEEE--TTEBHHHHHHHTCT CS
  Pkinase_Tyr   1 lelgkklGeGafGkVvegtlkgekekkevkVavKtl.keeateeekeelleeakimkklkhpnivkllgvctkeepllivteyvkgGdLlkfLrkkek 97 
                  lel k+lG+G +G+V   + +++k+   +k + K    +++   + e ll+e +++++l+hp iv l+  + ++++l++++  + gGd+   ++k   
   KOO22367.1 656 LELLKQLGSGGYGRVSLVRDTSTKRVYALKRVCKAHlLSHNGMMRCEWLLREKRVLEELEHPFIVTLHDTYADTSNLFLLLGCALGGDMYRLIEKL-- 751
                  67899**********99998866666666666665423444455578899*****************************************99998.. PP

                  TTSBHHHHHHHHHHHHHHHHHHHHTTEEEST-SGGGEEEEETTEEEE-STTTHEETTTSSEEEETTSSTSGGGGS-HHHHHHSEEEHHHHHHHHHHHH CS
  Pkinase_Tyr  98 ekltlkdllsfalqvAkGmeyLeskklvHrdlaarNvLlsenkvvkisDfGLardiekddeyvkkeeaklpvkWmapEslkekkftsksDvWsfGvll 195
                   +++ k    +a  +  +++++++++++ rdl   NvLl+++  vk++DfG a+++ +d +y++         ++apE+l ++ ++++ D W+ G+++
   KOO22367.1 752 GQVHEKIARFYAGSLTLALAHIHTHEMIYRDLKPENVLLDTQGYVKLCDFGFAKKV-TDRTYTRC----GTPDYTAPEMLLNQGVNQACDWWALGIMI 844
                  777777777788899999**************************************.33333322....3468************************* PP

                  HHHHTTSSGTTTTS..HHHHHHHHHHTTE CS
  Pkinase_Tyr 196 wEiftlgespypgl..kneevleklkegk 222
                  +E++  g  p+++   +++ +++++++g+
   KOO22367.1 845 FEMLM-GFPPFSDPrgNDMATYQNITKGE 872
                  ***99.99999887334444555665554 PP

>> Kinase-like  Kinase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   0.0   1.4e-06    0.0031     138     261 ..     755     865 ..     722     902 .. 0.68

  Alignments for each domain:
  == domain 1  score: 16.9 bits;  conditional E-value: 1.4e-06
  Kinase-like 138 hkkletiarlllTlqlirlaanLqakglvhgkftvdnllldekgglmlggftaLvragtkvvlsevekgfaPpEllgsrggytrknktkmthkldaWq 235
                  h+k +      lTl      a+++ + ++  +++++n+lld +g ++l +f+   ++ ++         +  pE+l ++g            + d W+
   KOO22367.1 755 HEKIARFYAGSLTL----ALAHIHTHEMIYRDLKPENVLLDTQGYVKLCDFGFAKKVTDRTYTRCGTPDYTAPEMLLNQGV---------NQACDWWA 839
                  44444444445555....4599***************************99877776666664333355667777766555.........4579**** PP

  Kinase-like 236 lGlviyriwclklPltlateeakeew 261
                  lG+ i+ +     P+  +  +    +
   KOO22367.1 840 LGIMIFEMLMGFPPFSDPRGNDMATY 865
                  *******9877777766655555555 PP

>> Mto2_bdg  Micro-tubular organiser Mto1 C-term Mto2-binding region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   2.8   0.00022       0.5      28      51 ..     269     292 ..     268     293 .. 0.93

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00022
    Mto2_bdg  28 rerLeelkaeNrlLkaeLerdrsh 51 
                 r+rL+e  a+N++L a+L+r+++ 
  KOO22367.1 269 RARLSEGLARNEQLVAQLQRLQQE 292
                 89*******************986 PP

>> Seadorna_VP7  Seadornavirus VP7
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   0.0   0.00014      0.31     150     186 ..     764     800 ..     748     808 .. 0.87

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.00014
  Seadorna_VP7 150 glkdLmdfhsestnllhGDcnpenlmcDknGylklvD 186
                   g   L   h   +++++ D +pen++ D  Gy+kl D
    KOO22367.1 764 GSLTLALAHIHTHEMIYRDLKPENVLLDTQGYVKLCD 800
                   5567888898899**********************99 PP

>> DUF2587  Protein of unknown function (DUF2587)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   0.3   0.00024      0.54      99     142 ..     281     327 ..     273     345 .. 0.73
   2 ?    2.9   0.6     0.031        69      35      76 ..     577     618 ..     573     630 .. 0.85

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.00024
     DUF2587  99 qlvGWleGl...fhGiqtalvaqqmaaraqleqlrralPpggkaaee 142
                 qlv  l+ l    hG++++l+a q a+ra +++ r ++P+g+++ + 
  KOO22367.1 281 QLVAQLQRLqqeSHGLRSTLLAHQGANRATVDDSRAKIPAGSMQGKG 327
                 5666555552225****************************554433 PP

  == domain 2  score: 2.9 bits;  conditional E-value: 0.031
     DUF2587  35 lleevraapldeasrerlkeihersikeleeglaPelveele 76 
                 l ee r+a +   sr +l  + ++s + l + l  el + ++
  KOO22367.1 577 LNEERRSATVTSTSRIKLMRLDKESFRVLLSVLHAELLKRVH 618
                 447889*************************99999977665 PP

>> Haspin_kinase  Haspin like kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   0.1   0.00014      0.32     180     255 ..     728     805 ..     673     818 .. 0.73

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.00014
  Haspin_kinase 180 seqqlflvlllkdkGtdLeev.klkswkqalsifwqivkiLyvaE.tkfeFEHRdLhldniLvdknlnvtlidlklsR 255
                    ++ +lfl+l    +G+    + kl ++++    f+    +L++a     e+  RdL+ +n+L+d ++ v l+d+  ++
     KOO22367.1 728 DTSNLFLLLGCALGGDMYRLIeKLGQVHEKIARFYAGSLTLALAHiHTHEMIYRDLKPENVLLDTQGYVKLCDFGFAK 805
                    34455555555555544444477777777777788888888877634578889*********************8876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (995 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       536  (0.0298957); expected 358.6 (0.02)
Passed bias filter:                      450  (0.025099); expected 358.6 (0.02)
Passed Vit filter:                        48  (0.00267723); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.70u 0.25s 00:00:00.95 Elapsed: 00:00:00.40
# Mc/sec: 7536.51
//
Query:       KOO22368.1  [L=362]
Description: hypothetical protein Ctob_002277 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (362 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       425  (0.0237046); expected 358.6 (0.02)
Passed bias filter:                      314  (0.0175135); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.46u 0.26s 00:00:00.72 Elapsed: 00:00:00.43
# Mc/sec: 2538.24
//
Query:       KOO22369.1  [L=545]
Description: hypothetical protein Ctob_002276 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.6e-07   29.7   0.0     0.0011   19.1   0.0    3.1  3  PPR_2     PPR repeat family
     0.0021   18.1   0.0       0.79    9.8   0.0    2.4  2  PPR_3     Pentatricopeptide repeat domain


Domain annotation for each model (and alignments):
>> PPR_2  PPR repeat family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.0   0.0   0.00076       6.8       2      38 ..     266     303 ..     265     304 .. 0.86
   2 !   19.1   0.0   1.2e-07    0.0011       3      44 ..     387     429 ..     386     429 .. 0.88
   3 ?   -2.4   0.0      0.65   5.8e+03      21      33 ..     458     470 ..     452     472 .. 0.79

  Alignments for each domain:
  == domain 1  score: 7.0 bits;  conditional E-value: 0.00076
       PPR_2   2 dvvtyNtlIsglckkgkveeAf.klfneMkkrglePns 38 
                 +v+ y+++++    +g  eeA+  l+ +M++ g+ P++
  KOO22369.1 266 NVHLYTAVLTRIQLEGGGEEAVgALLAQMQREGVVPDA 303
                 8999999999998888888887469***********96 PP

  == domain 2  score: 19.1 bits;  conditional E-value: 1.2e-07
       PPR_2   3 vvtyNtlIsglckkgk.veeAfklfneMkkrglePnsyTysil 44 
                 v ++N+l+s l  +g+ +e   k++ eMk++ leP+++T  il
  KOO22369.1 387 VAAFNALLSRLQIEGQpIEALGKVLAEMKRQRLEPDTHTRRIL 429
                 689*************555556*****************7775 PP

  == domain 3  score: -2.4 bits;  conditional E-value: 0.65
       PPR_2  21 eAfklfneMkkrg 33 
                  A++lf   ++rg
  KOO22369.1 458 AAWDLFGGLVERG 470
                 79****8887777 PP

>> PPR_3  Pentatricopeptide repeat domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.7   0.0    0.0018        16       4      48 ..     256     301 ..     255     304 .. 0.82
   2 !    9.8   0.0   8.8e-05      0.79       3      49 ..     375     422 ..     373     425 .. 0.83

  Alignments for each domain:
  == domain 1  score: 5.7 bits;  conditional E-value: 0.0018
       PPR_3   4 remerkgikldvvtYthLLtayanag.nkklalevlermkkkgikP 48 
                 re+ +  ++ +v  Yt+ Lt + + g  ++++   l++m+ +g+ P
  KOO22369.1 256 REASAGRVRANVHLYTAVLTRIQLEGgGEEAVGALLAQMQREGVVP 301
                 677777899**********99877751567777899******9998 PP

  == domain 2  score: 9.8 bits;  conditional E-value: 8.8e-05
       PPR_3   3 lremerkgikldvvtYthLLtayanagnk.klalevlermkkkgikPt 49 
                 l  +e+ g  l v  +++LL+     g   +++ +vl++mk ++++P 
  KOO22369.1 375 LSRAEASGCALPVAAFNALLSRLQIEGQPiEALGKVLAEMKRQRLEPD 422
                 66678889999999******99888887626777*************6 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (545 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       723  (0.0403257); expected 358.6 (0.02)
Passed bias filter:                      354  (0.0197445); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.56u 0.23s 00:00:00.79 Elapsed: 00:00:00.42
# Mc/sec: 3925.64
//
Query:       KOO22370.1  [L=455]
Description: dioxygenase ramosus1 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.4e-72  244.1   0.0    3.8e-72  244.0   0.0    1.0  1  RPE65     Retinal pigment epithelial membrane protein


Domain annotation for each model (and alignments):
>> RPE65  Retinal pigment epithelial membrane protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  244.0   0.0   2.1e-76   3.8e-72      54     461 ..       1     448 [.       1     450 [. 0.81

  Alignments for each domain:
  == domain 1  score: 244.0 bits;  conditional E-value: 2.1e-76
                 EEEEEEECTTEE.EEEEEE---HHHHHHHHHTS--SBSTT....................TTSB-----SEEEE.ETTEEEEEETTCEEE.EEETTTTE CS
       RPE65  54 mlhrfefkdgkv.tyrnRfvrtdaylaerkagkslfdglp....................akkkknnantnvvy.hggrllalteagkpy.eidpetLe 129
                 m++++++ ++ v +++nRfvr+da++  r  g+ lf ++                      + +++na++n v+  +g+ lalte+ +    i+  +L 
  KOO22370.1   1 MMTKINLGGDGVpRFSNRFVRSDAFEGLRI-GEQLFAEFGtprrrptnplelvrslfeliFAAPTDNASVNTVRlADGTRLALTETRRGSfVINGADLS 98 
                 66777774433449***********77766.7766633334445555556666666677777788899998886267899*****9986648999**** PP

                 EEEE--CCC..TTS-B-SS-EEETTCEEEEEEEECCTCECEEEEEEE-.T...T-EEEEEEEECS..S..------EEE-SSEEEEEE--EECHC.H.. CS
       RPE65 130 tlgkvdldg..eseaftAHpkvdpetgelynfglslgkppsvtysvfdvaaaidksrevkiklpge.klkpayiHdfalTenyvvlvelplklnlkk.. 223
                 t  +++++g   ++  tAHp +   +g ++n+g+++g+   ++y+v++  +a+++ re   ++p++ +++p+++H+f+lT + +v++e+p+ ++l +  
  KOO22370.1  99 TERRFEWTGaaTGQLNTAHPMRT-PDGGFVNVGTDVGSAL-CSYHVYRTRPATPEVREIIASIPCArRAAPCWLHSFGLTATRAVVIEQPTPYDLPSml 195
                 *******875543444*******.68**********9555.6899988775544344444488888788***********************9999999 PP

                 .CCCTCGGCEEE-TTS-EEEEEEETT.TT--GG...EEEEE--SEEEEEEEEEEET.TCEEEEEEEEE.SS.--STTS-CT.T----.-...GGTGGG- CS
       RPE65 224 .gkksggdalewdpekptrfgvipRr.gekegvakfrwfeteaffvfHtaNayeeeedgevvvdlcryedaevldnlylenlrsrkgeakkeekaeesq 320
                  + k++  +l+w+p  ++r+++++   g++   +++r +  ++ff+fH+aN+++ e +g v vdl  y+d++++++l l++l   +g+a ++       
  KOO22370.1 196 gMAKAAYTCLQWRPGDGVRIHLVDLAtGAV---ETRRVA--DPFFFFHIANTFDAE-GGGVSVDLALYDDPSIVEALRLQRLSAPAGAAVED----LPC 284
                 988999*******************96533...333455..5***********997.55599******9999********997666655433....345 PP

                 EEEEEEEEETTTTTCEECE...EEEEESS-EEEEE--GGGTTS-.-SEEEEEE-SSTTSS-..-.-EEEEEET.................-TTTE.... CS
       RPE65 321 srlrryrldlktgsateeke..eaalsdrslEfPrinpaysgrk.yryvYgasasggsdkaskf.dglvkvDl.................etkgrea.. 396
                 srl+r +++ ++++a ++++  + + ++  ++fP+ np+++  + y++v++++a++++     + ++l+k+ l                       +  
  KOO22370.1 285 SRLTRLHIPADASAAITRTSldDVRATGGFVDFPVTNPRVMADAaYKFVWAIAANRPT----RLaNKLIKIELraeppsspsratdgeggR-----Tgg 374
                 79*********99999998754444455555******99887766*********9994....444*********99999988888776662.....134 PP

                 ...........EE--EEEEESTTTSSTT-EEEEEEEEET.TTEEEEEEEETTBCCCSEEEEESS---S--BEEE CS
       RPE65 397 ........eghypgEpiFVPragateEDdGvllsvvlde.eersellvldAktltevArvelpqrvpygfHGtf 461
                         ++++p+Ep+FVPr+gat+EDdGvll+++ de ++++ l+vldA+t++  Ar++lp ++pygfHG +
  KOO22370.1 375 aktncfaePNCFPSEPVFVPRPGATSEDDGVLLCLLNDEvARTTSLVVLDAATMALQARLRLPRALPYGFHGDW 448
                 44567888999*************************************************************** PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (455 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       216  (0.0120475); expected 358.6 (0.02)
Passed bias filter:                      196  (0.010932); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.27s 00:00:00.71 Elapsed: 00:00:00.40
# Mc/sec: 3380.60
//
Query:       KOO22371.1  [L=106]
Description: hypothetical protein Ctob_002274 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (106 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       265  (0.0147805); expected 358.6 (0.02)
Passed bias filter:                      174  (0.00970495); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.24s 00:00:00.57 Elapsed: 00:00:00.37
# Mc/sec: 852.09
//
Query:       KOO22372.1  [L=1657]
Description: hypothetical protein Ctob_002273 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1657 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1406  (0.0784204); expected 358.6 (0.02)
Passed bias filter:                      525  (0.0292822); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 1.03u 0.31s 00:00:01.34 Elapsed: 00:00:00.45
# Mc/sec: 10952.16
//
Query:       KOO22373.1  [L=176]
Description: glycosyl transferase family 2 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
     0.0016   19.1   0.0     0.0026   18.4   0.0    1.3  1  Methyltransf_25  Methyltransferase domain
  ------ inclusion threshold ------
      0.033   13.7   0.1      0.049   13.1   0.1    1.2  1  CheR             CheR methyltransferase, SAM binding domain
       0.05   12.9   0.0      0.062   12.6   0.0    1.1  1  Methyltransf_2   O-methyltransferase domain


Domain annotation for each model (and alignments):
>> Methyltransf_25  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.4   0.0   4.4e-07    0.0026       1      90 [.      13     101 ..      13     104 .. 0.83

  Alignments for each domain:
  == domain 1  score: 18.4 bits;  conditional E-value: 4.4e-07
                      EEEET-TTSHHHHHHHCTS..TSSEEEEEESSHHHHHHHHHHHHHTTT.TEEEEESBCCGBSSSTTTEEEEEEESTGGGSSHHHHHHHHHHHH CS
  Methyltransf_25   1 vLdlGcGtGrltlalakrl..gkakvtgvDiseemleaareraeeegl.nvefvqgdaedlpfedgsfDlvvssgalhhlsdedlekalkeia 90 
                      + d+ cG  ++ ++++k l   + +++g Di + +++a ++++ +  + +vef++ d++   +    +Dlvv++  l h++ +++ ++l+++ 
       KOO22373.1  13 IFDVPCGDFNYFRDILKDLrmASVHYIGADIVQFLVDALNREFYQ--PnRVEFMRFDLSLQALW--PVDLVVVRDILFHFNAQRALDVLRNVN 101
                      68999***********9996448********************43..44********8544433..69*****76699999998888888875 PP

>> CheR  CheR methyltransferase, SAM binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.1   8.2e-06     0.049     118     162 ..      59     101 ..      49     106 .. 0.90

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 8.2e-06
                 TTEEEEE--TTT-SGGG--EEEEEE-SSGGGC-CHHHHHHHHHHH CS
        CheR 118 elvkFeklnllekksvlgklDvifcrnvliYfdeetqekvlerfa 162
                 ++v+F++ +l    ++l ++D+++ r++l  f+ ++  +vl++++
  KOO22373.1  59 NRVEFMRFDLSL--QALWPVDLVVVRDILFHFNAQRALDVLRNVN 101
                 6899*****988..88899*****************999999876 PP

>> Methyltransf_2  O-methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0     1e-05     0.062      59     154 ..       6     102 ..       3     122 .. 0.85

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 1e-05
                     -GGG-SEEEEET-TTSHHHHHHHHH-..TT-EEEEEE-HHHHHHHHHHS-----TTEEEEES-TTTS-----SEEEEESSGGGS-HHHHHHHHHH CS
  Methyltransf_2  59 dleglkslvDvGGGtGalakaivsay..PtikvivfDlpeVveaAkehlsageeervefvgGdffkdslPeaDaillkrvlhDwsdekcvklLkr 151
                     +l ++k+++Dv  G     + i +     +++ i  D+ +   +A ++ ++ + +rvef+  d+  ++l   D++++  +l+ ++ ++   +L++
      KOO22373.1   6 ELLEIKTIFDVPCGDFNYFRDILKDLrmASVHYIGADIVQFLVDALNR-EFYQPNRVEFMRFDLSLQALWPVDLVVVRDILFHFNAQRALDVLRN 99 
                     566777888888888888888777541145666778999999999999.99999***************************************** PP

                     HHH CS
  Methyltransf_2 152 vkk 154
                     v++
      KOO22373.1 100 VNQ 102
                     986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (176 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       262  (0.0146132); expected 358.6 (0.02)
Passed bias filter:                      249  (0.0138881); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.38u 0.26s 00:00:00.64 Elapsed: 00:00:00.41
# Mc/sec: 1300.59
//
Query:       KOO22374.1  [L=209]
Description: hypothetical protein Ctob_002271 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (209 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       449  (0.0250432); expected 358.6 (0.02)
Passed bias filter:                      426  (0.0237604); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.41u 0.24s 00:00:00.64 Elapsed: 00:00:00.38
# Mc/sec: 1631.51
//
Query:       KOO22375.1  [L=287]
Description: hypothetical protein Ctob_002270 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
     0.0031   17.7   2.9       0.51   10.6   0.2    3.2  3  PABP         Poly-adenylate binding protein, unique domain
     0.0075   16.0   9.9        0.7    9.7   0.1    4.2  3  XPC-binding  XPC-binding domain
  ------ inclusion threshold ------
      0.087   12.6   1.1       0.19   11.5   0.0    1.8  2  QWRF         QWRF family
       0.23   11.4   0.2       0.23   11.4   0.2    5.1  5  STI1         STI1 domain
        1.2    9.5  11.5      0.058   13.7   4.4    2.5  2  DUF2999      Protein of unknown function (DUF2999)


Domain annotation for each model (and alignments):
>> PABP  Poly-adenylate binding protein, unique domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.6   0.2   0.00014      0.51      43      67 ..      99     123 ..      92     124 .. 0.88
   2 ?   -1.3   0.1      0.73   2.6e+03      46      62 ..     139     155 ..     134     159 .. 0.78
   3 !    6.0   0.0    0.0039        14      46      67 ..     172     193 ..     168     194 .. 0.88

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00014
        PABP  43 dnsellellesdeeLrekveeAiev 67 
                  n+el e+l+++e+++ek+ e  ++
  KOO22375.1  99 ANPELAEMLSNPELMKEKIAEVSQM 123
                 699*****************98776 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 0.73
        PABP  46 ellellesdeeLrekve 62 
                 e+ +++ ++++L++  +
  KOO22375.1 139 EMQSVMTDPDKLQQALQ 155
                 66788999999998776 PP

  == domain 3  score: 6.0 bits;  conditional E-value: 0.0039
        PABP  46 ellellesdeeLrekveeAiev 67 
                  l e l ++++Lr++ve+A+e+
  KOO22375.1 172 GLAEALADPDALRNHVEKAAEI 193
                 577899*************997 PP

>> XPC-binding  XPC-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.7   0.1    0.0002       0.7      25      44 ..      90     109 ..      87     127 .. 0.88
   2 !    6.4   0.3    0.0021       7.6      15      37 ..     141     162 ..     132     166 .. 0.78
   3 ?    3.5   0.7     0.016        58      19      32 ..     198     211 ..     192     220 .. 0.90

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 0.0002
  XPC-binding  25 qplLqqlaqsnPqllqlIqq 44 
                   p+L+ la  nP+l++++++
   KOO22375.1  90 NPMLKGLASANPELAEMLSN 109
                  59**************9974 PP

  == domain 2  score: 6.4 bits;  conditional E-value: 0.0021
  XPC-binding  15 qlvqqnPqlLqplLqqlaqsnPq 37 
                  q v ++P  Lq+ Lqq+  +nP+
   KOO22375.1 141 QSVMTDPDKLQQALQQIV-DNPA 162
                  57889***********95.4565 PP

  == domain 3  score: 3.5 bits;  conditional E-value: 0.016
  XPC-binding  19 qnPqlLqplLqqla 32 
                  q+P+ +q+lLq ++
   KOO22375.1 198 QDPEQMQELLQGMG 211
                  89*********987 PP

>> QWRF  QWRF family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.3      0.37   1.3e+03     252     272 ..     125     145 ..     118     149 .. 0.80
   2 ?   11.5   0.0   5.2e-05      0.19     232     294 ..     162     226 ..     149     227 .. 0.88

  Alignments for each domain:
  == domain 1  score: -1.2 bits;  conditional E-value: 0.37
        QWRF 252 slkealssAvdvmqaiessic 272
                 + +e ++ A  +m++++s+++
  KOO22375.1 125 NSEEGMNMASKMMEEMQSVMT 145
                 556778999999999999875 PP

  == domain 2  score: 11.5 bits;  conditional E-value: 5.2e-05
        QWRF 232 aLkastlrLPvvegAkadvqslkealssAvdvmqaies..sicsllskveeinslvseLaevvaq 294
                 aLk     +P   +A ad ++l++ + +A+++ q++++   +++ll  +++++ +++++ ++++q
  KOO22375.1 162 ALKGFANAVPGLAEALADPDALRNHVEKAAEIFQKMQDpeQMQELLQGMGGMEGMAEQMKKMMSQ 226
                 677778889999************************95448******************999886 PP

>> STI1  STI1 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.6   0.7     0.074   2.6e+02      21      44 ..      70      91 ..      70      95 .. 0.74
   2 ?   11.4   0.2   6.4e-05      0.23       4      25 ..      93     114 ..      90     125 .. 0.78
   3 ?    7.9   5.2   0.00079       2.9       3      35 ..     131     162 ..     129     181 .. 0.91
   4 ?    2.3   0.8     0.047   1.7e+02      39      48 ..     195     204 ..     164     212 .. 0.70
   5 ?   -3.0   0.2       2.1   7.5e+03      23      28 ..     220     225 ..     216     229 .. 0.54

  Alignments for each domain:
  == domain 1  score: 1.6 bits;  conditional E-value: 0.074
        STI1 21 PefvakleeiqsNPqalqqymsDp 44
                P++ +++e ++     l++ m++p
  KOO22375.1 70 PDMAKIMEMMA--GGDLSNLMNNP 91
                78888888887..66667777776 PP

  == domain 2  score: 11.4 bits;  conditional E-value: 6.4e-05
        STI1   4 lfaklaanPetrellsDPefva 25 
                 l   + anPe++e+ls+Pe+++
  KOO22375.1  93 LKGLASANPELAEMLSNPELMK 114
                 5556789************886 PP

  == domain 3  score: 7.9 bits;  conditional E-value: 0.00079
        STI1   3 elfaklaanPetrellsDPe.fvakleeiqsNPq 35 
                 ++++k+++  e++  + DP+ +++ l++i  NP+
  KOO22375.1 131 NMASKMME--EMQSVMTDPDkLQQALQQIVDNPA 162
                 78999999..*********769***********6 PP

  == domain 4  score: 2.3 bits;  conditional E-value: 0.047
        STI1  39 qymsDprimt 48 
                 q+m+Dp+ m+
  KOO22375.1 195 QKMQDPEQMQ 204
                 4455554443 PP

  == domain 5  score: -3.0 bits;  conditional E-value: 2.1
        STI1  23 fvakle 28 
                 + +++ 
  KOO22375.1 220 MKKMMS 225
                 444444 PP

>> DUF2999  Protein of unknown function (DUF2999)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   0.1       3.3   1.2e+04      52      57 ..      86      91 ..      69      95 .. 0.56
   2 ?   13.7   4.4   1.6e-05     0.058       5      60 ..     104     164 ..      99     188 .. 0.78

  Alignments for each domain:
  == domain 1  score: -3.4 bits;  conditional E-value: 3.3
     DUF2999 52 lvmtnP 57
                 +m+nP
  KOO22375.1 86 NLMNNP 91
                233333 PP

  == domain 2  score: 13.7 bits;  conditional E-value: 1.6e-05
     DUF2999   5 iailkehnvsdekiaelfealtenPlaama.....liqqlGipqeklqallalvmtnPali 60 
                  ++l + ++  ekiae+ + l  +  + ma      +q++   ++klq+ l++++ nPal 
  KOO22375.1 104 AEMLSNPELMKEKIAEVSQMLNSEEGMNMAskmmeEMQSVMTDPDKLQQALQQIVDNPALK 164
                 4689999999***********8776665552211157888999***************994 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (287 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1168  (0.0651459); expected 358.6 (0.02)
Passed bias filter:                      744  (0.041497); expected 358.6 (0.02)
Passed Vit filter:                        83  (0.00462937); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.54u 0.25s 00:00:00.79 Elapsed: 00:00:00.39
# Mc/sec: 2203.19
//
Query:       KOO22376.1  [L=291]
Description: branched-chain-amino-acid aminotransferase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    7.1e-25   88.2   0.0    8.7e-25   87.9   0.0    1.1  1  Aminotran_4  Amino-transferase class IV


Domain annotation for each model (and alignments):
>> Aminotran_4  Amino-transferase class IV
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   87.9   0.0   4.9e-29   8.7e-25       2     202 ..      73     290 ..      72     291 .] 0.93

  Alignments for each domain:
  == domain 1  score: 87.9 bits;  conditional E-value: 4.9e-29
  Aminotran_4   2 lfEtmrvy...ngei..ffldeHleRLrksaellglelpfdeeelrkileelleannsen........grlrllvsrgggglgaatsepsvavyvsal 86 
                  +fE++++    +g++  f+  ++++RLr ++e+l  ++++ +  +  +++ +++ n +++         +lr+++++ g++lg  +++p++a +v+a+
   KOO22376.1  73 IFEGLKAFhckDGKVrvFNSGANAARLRSGCERL-YMPTVERAMFDDAVDRVIKDNVDYVppygsggsMYLRPFLFGHGAKLG-LGPAPEYAFCVVAS 168
                  79999966666888886889***********999.799999999999***********99*****98888*************.************** PP

  Aminotran_4  87 ppgpeseke...lplvtssdvrrdapsplpgaKtln.yldnvlarreakergadevllvdedgn..vtEgstsNv.fivkggelitPplssgiLpGit 177
                  p g++++     + + + +   r ap+    +K    y++ v   +eak++g+  +l++d + n  v E+stsN+  +++ g l+tP  ss iLp++t
   KOO22376.1 169 PVGAYYKGGleaIDALVVDGFDRAAPRGVGSIKAAGnYAPDVSPSAEAKKKGYPVCLYLDAATNqyVEEFSTSNFlGVTEKGVLVTPTSSS-ILPSCT 265
                  *********9998888888899***********9877***********************999999*********99**********7766.****** PP

  Aminotran_4 178 rrallelakalgleveereitlkdl 202
                  + +ll++a++ g++veer++  +++
   KOO22376.1 266 KGVLLQQARDMGIPVEERPVAWEEV 290
                  *******************987776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (291 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       282  (0.0157287); expected 358.6 (0.02)
Passed bias filter:                      279  (0.0155614); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.27s 00:00:00.68 Elapsed: 00:00:00.40
# Mc/sec: 2157.37
//
Query:       KOO22377.1  [L=292]
Description: surf-family protein shy1 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.4e-33  114.5   0.0    8.1e-33  114.1   0.0    1.1  1  SURF1     SURF1 family


Domain annotation for each model (and alignments):
>> SURF1  SURF1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  114.1   0.0   4.5e-37   8.1e-33       5     175 ..      55     279 ..      52     280 .. 0.74

  Alignments for each domain:
  == domain 1  score: 114.1 bits;  conditional E-value: 4.5e-37
       SURF1   5 vvlfgLGtWQlqRlkwkealiaeleerlaaeplplleka....leal..e.efeyrrvtvtGrfdhdkevlvgngqprv..................Gy 78 
                  ++++L  WQ++R+ +k++++++++++l+a+p pl +++    +     +   ey+rv+v+G+fdh ++vl+g   pr+                  G 
  KOO22377.1  55 GTTACLCGWQVKRYGDKVQMVEDRKTALQAAPRPL-REVypelS--AgiSaGDEYTRVSVEGTFDHARQVLLG---PRSappgsdkgnspagapaqsGW 147
                 5799***************************9997.54545443..1556688********************...88777888999999999999*** PP

       SURF1  79 lvltplrleddgeavlVnrGWvpaea.eklpkaapegeevrevtGllr...ksstp.....apeeesgewqvqsidvaalaealgaq............ 156
                  v+tpl + +dg++vlVnrGWvp++a +++  ++p+ +++r ++G+l+   ++        +  ++ g  ++ ++d+a+la+ +g +            
  KOO22377.1 148 DVVTPLAC-ADGSRVLVNRGWVPRDAtAAI--DQPT-GQQR-IEGVLKqgdRE--NkyghnD--PAAG--RYVWLDLASLARSSGSSpilvmaaaegsd 235
                 ********.67*************774333..2455.4478.******54321..1234323..3555..5699*********7633444455555555 PP

       SURF1 157 ...........kvlpvvl...................hlgYaltWfgla 175
                            +                         h+ Ya+tW +l 
  KOO22377.1 236 asdgraassvhR-----TwprvrplsslmsfyvephtHIVYAATWASLT 279
                 556666666662.....03333355555666666666*********996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (292 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       361  (0.020135); expected 358.6 (0.02)
Passed bias filter:                      271  (0.0151152); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.24s 00:00:00.67 Elapsed: 00:00:00.41
# Mc/sec: 2160.77
//
Query:       KOO22378.1  [L=1173]
Description: hypothetical protein Ctob_002266 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      5e-11   41.7  14.8    0.00016   21.5   0.1    6.1  7  LRR_6     Leucine Rich repeat
    1.7e-06   28.1   0.1    3.1e-06   27.2   0.1    1.4  1  NACHT     NACHT domain
     0.0032   17.8   8.6        1.2    9.6   0.0    4.5  5  LRR_4     Leucine Rich repeats (2 copies)
     0.0046   17.3   0.1      0.068   13.5   0.0    2.6  2  AAA_19    AAA domain
  ------ inclusion threshold ------
      0.037   14.3   0.0       0.11   12.8   0.0    1.8  1  AAA_22    AAA domain
       0.16   11.1   0.0       0.32   10.1   0.0    1.4  1  NB-ARC    NB-ARC domain


Domain annotation for each model (and alignments):
>> LRR_6  Leucine Rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.2   0.0   0.00047       1.4       4      24 .]     879     899 ..     879     899 .. 0.96
   2 ?    4.2   0.0     0.018        53       5      24 .]     907     926 ..     904     926 .. 0.95
   3 ?   -1.7   0.1       1.4   4.3e+03       4      12 ..     950     958 ..     950     958 .. 0.85
   4 !   12.5   0.0     4e-05      0.12       5      24 .]     979     998 ..     976     998 .. 0.92
   5 ?   -2.5   0.1       2.5   7.5e+03       5      12 ..    1023    1030 ..    1023    1030 .. 0.88
   6 !   21.5   0.1   5.2e-08   0.00016       5      24 .]    1113    1132 ..    1111    1132 .. 0.97
   7 ?   -1.6   0.1       1.4   4.1e+03       2      19 ..    1138    1155 ..    1137    1155 .. 0.86

  Alignments for each domain:
  == domain 1  score: 9.2 bits;  conditional E-value: 0.00047
       LRR_6   4 hLteLdLsgNdIgDeGaeaLa 24 
                 +L++L Ls N+++ e a aLa
  KOO22378.1 879 KLRTLGLSQNKLDAEDARALA 899
                 69*****************98 PP

  == domain 2  score: 4.2 bits;  conditional E-value: 0.018
       LRR_6   5 LteLdLsgNdIgDeGaeaLa 24 
                 Lt+L+++  +I +eGa+ La
  KOO22378.1 907 LTSLSVANSNIVGEGAQQLA 926
                 9****************998 PP

  == domain 3  score: -1.7 bits;  conditional E-value: 1.4
       LRR_6   4 hLteLdLsg 12 
                 +Lt+LdL+g
  KOO22378.1 950 KLTKLDLKG 958
                 69*****85 PP

  == domain 4  score: 12.5 bits;  conditional E-value: 4e-05
       LRR_6   5 LteLdLsgNdIgDeGaeaLa 24 
                 L+ L+++ N+I++eGa+ La
  KOO22378.1 979 LENLSVANNNIDGEGAQHLA 998
                 899**************998 PP

  == domain 5  score: -2.5 bits;  conditional E-value: 2.5
       LRR_6    5 LteLdLsg 12  
                  Lt+LdL+g
  KOO22378.1 1023 LTKLDLRG 1030
                  89****86 PP

  == domain 6  score: 21.5 bits;  conditional E-value: 5.2e-08
       LRR_6    5 LteLdLsgNdIgDeGaeaLa 24  
                  Lt+L+L+gN+Ig eGa+a+a
  KOO22378.1 1113 LTTLHLNGNNIGAEGAKAIA 1132
                  9*****************98 PP

  == domain 7  score: -1.6 bits;  conditional E-value: 1.4
       LRR_6    2 nthLteLdLsgNdIgDeG 19  
                  n  Lt+L L   ++gD+G
  KOO22378.1 1138 NAVLTKLWLGNTNMGDAG 1155
                  6669999999999***98 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.2   0.1     1e-09   3.1e-06      11     161 ..     400     545 ..     392     550 .. 0.70

  Alignments for each domain:
  == domain 1  score: 27.2 bits;  conditional E-value: 1e-09
                 TCHHHHHHHHHHHHCTS-SCCCC-SEEEEEETTTTTTS-........-HCHHHCCCCTS--SSS-C..CHHHHCC.SCCCEEEEEE-STT-SS-TCH.. CS
       NACHT  11 sGKTtLlqklalawaegklpqgafklvFflslrelsrsgna.....rsladllfsqlpepaapvse..vwavlle.lperlLlilDglDelvtdlgqke 101
                 sGKTtLl ++++++ +++  +    ++++++++ l+++         s  +++ + l  + +++++  ++ ++++  ++r+Ll+lDglDe+ ++     
  KOO22378.1 400 SGKTTLLSQVVTLALQDEHTE---LVPILVKVQVLQQRLLDapdafASAWNYIDAYLRLEHEASRPalYRMLRQAmMARRALLLLDGLDEAGAKRAD-- 493
                 8*********99988888555...67777777777665332344456666666555444444444465333333315789************95555.. PP

                 .......HHHHHCTTTTT--EEEEEEECCCHHHHCTTSSCE..EEEE--TCCHHHHHHHH CS
       NACHT 102 kqpvrtlLselirkkllpeasllltvrpralrdleeqleeaivlevegfsesrrkqlvrk 161
                        L + ++   +++  ll t+rp ++   e  ++  ++le++++s  + ++ +++
  KOO22378.1 494 -----IEL-HVVEVLAPQGHVLLCTSRPAGV--DEARFAAFRRLELAPLSDAQQERALEQ 545
                 .....444.455555567888899*******..999999999********9999887766 PP

>> LRR_4  Leucine Rich repeats (2 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.6   0.0   0.00041       1.2       2      34 ..     879     916 ..     879     920 .. 0.81
   2 ?    2.1   0.4     0.095   2.8e+02       3      36 ..     951     989 ..     950     992 .. 0.50
   3 ?    1.3   0.2      0.17   5.1e+02       3      14 ..     979     990 ..     977    1011 .. 0.83
   4 ?   -1.7   0.2       1.5   4.4e+03       3      25 ..    1023    1042 ..    1020    1059 .. 0.60
   5 !    7.6   0.1    0.0018       5.4       3      35 ..    1113    1150 ..    1112    1156 .. 0.71

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 0.00041
                 S--EEE--SS---E-S-..HH...H-TT--EEE-.-S- CS
       LRR_4   2 nLevLdLsnNqltdipl..le...klpnLkeLdLsgNn 34 
                 +L++L Ls+N+l   +   l+   k + L++L++ + n
  KOO22378.1 879 KLRTLGLSQNKLDAEDAraLApalKTTALTSLSVANSN 916
                 79***********9999774466889********4432 PP

  == domain 2  score: 2.1 bits;  conditional E-value: 0.095
                 --EEE--SS---E-S-..HH...H.-TT--EEE-.-S--- CS
       LRR_4   3 LevLdLsnNqltdipl..le...k.lpnLkeLdLsgNnli 36 
                 L++LdL +  l   ++  l+   +  p L+ L++ +N +i
  KOO22378.1 951 LTKLDLKGKGLGATEGivLAelmQlSPVLENLSVANN-NI 989
                 6666666666665555343333332333777777333.33 PP

  == domain 3  score: 1.3 bits;  conditional E-value: 0.17
                 --EEE--SS--- CS
       LRR_4   3 LevLdLsnNqlt 14 
                 Le+L+ +nN++ 
  KOO22378.1 979 LENLSVANNNID 990
                 899999999997 PP

  == domain 4  score: -1.7 bits;  conditional E-value: 1.5
                  --EEE--SS---E-S-HHH-TT- CS
       LRR_4    3 LevLdLsnNqltdiplleklpnL 25  
                  L++LdL++  +   + l  l +L
  KOO22378.1 1023 LTKLDLRG--VGVSGALV-LSDL 1042
                  78888877..54433455.5554 PP

  == domain 5  score: 7.6 bits;  conditional E-value: 0.0018
                  --EEE--SS---E-S-..HH...H.-TT--EEE-.-S-- CS
       LRR_4    3 LevLdLsnNqltdipl..le...k.lpnLkeLdLsgNnl 35  
                  L++L+L++N++   +   ++   k +  L++L+L gN++
  KOO22378.1 1113 LTTLHLNGNNIGAEGAkaIAealKvNAVLTKLWL-GNTN 1150
                  99*********97666662244443444999999.7755 PP

>> AAA_19  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.3   0.0      0.26   7.8e+02      33      61 ..     333     361 ..     325     375 .. 0.80
   2 !   13.5   0.0   2.3e-05     0.068      11      46 ..     390     425 ..     380     430 .. 0.86

  Alignments for each domain:
  == domain 1  score: 0.3 bits;  conditional E-value: 0.26
      AAA_19  33 llvelggvkpeeillvaftgrAakelrer 61 
                 +l ++  +++++++++++tg Aa e + +
  KOO22378.1 333 ELPQVAFEALRQCVAISVTGGAAAEAEAA 361
                 5666677788*************997655 PP

  == domain 2  score: 13.5 bits;  conditional E-value: 2.3e-05
      AAA_19  11 kvllvtaGpGtGKTrvlkhivallvelggvkpeeil 46 
                 +  l+taGp +GKT++l ++v+l+++ ++ ++ +il
  KOO22378.1 390 RAALLTAGPASGKTTLLSQVVTLALQDEHTELVPIL 425
                 5689******************99999888777766 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0   3.7e-05      0.11       6     102 ..     390     486 ..     385     498 .. 0.77

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 3.7e-05
      AAA_22   6 gilvvtGesGtGKTtllrrlleqldeeakaee....erpevv...fvtlpsstsskdllrellralglelkaerlsseellealeqalraraviellii 97 
                 +  ++t+ + +GKTtll +++  + ++++ e      +++v+   + ++p     ++ ++ +   l le++a   s+ +l+++l+qa+ ar++  ll++
  KOO22378.1 390 RAALLTAGPASGKTTLLSQVVTLALQDEHTELvpilVKVQVLqqrLLDAPD--AFASAWNYIDAYLRLEHEA---SRPALYRMLRQAMMARRA--LLLL 481
                 567899999**************9888777666666555555433333333..4577777888888888888...999999999999999999..9999 PP

      AAA_22  98 DEaqh 102
                 D  + 
  KOO22378.1 482 DGLDE 486
                 98875 PP

>> NB-ARC  NB-ARC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.0   0.00011      0.32      31     112 ..     400     484 ..     386     531 .. 0.67

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.00011
                 SSHHHHHHHHCCSH..CCCCCCBTEEEEEEEESXX..HHHHHHHXXHHHHHCCCTTSSSS-STTSHHHHHHHHCCCTTEEEEEEEE CS
      NB-ARC  31 vGKttlakqilnks..devegrFdsvawvvvsktd..kseeiletilkeLslseddleekeeveslkrklvrlLltkrfllvlDDV 112
                 +GKttl++q++     de ++  ++++ v+v ++   +  + + + ++ +      le+ +++  l r+l++++  +r ll+lD  
  KOO22378.1 400 SGKTTLLSQVVTLAlqDEHTELVPILVKVQVLQQRllDAPDAFASAWNYIDAY-LRLEHEASRPALYRMLRQAMMARRALLLLDGL 484
                 8*********9873013333345566666666553124445555555555333.44445555555*******************65 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1173 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       510  (0.0284455); expected 358.6 (0.02)
Passed bias filter:                      346  (0.0192983); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.77u 0.29s 00:00:01.06 Elapsed: 00:00:00.46
# Mc/sec: 7597.36
//
Query:       KOO22379.1  [L=80]
Description: hypothetical protein Ctob_002267 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.067   12.6   0.1       0.11   12.0   0.1    1.3  1  DUF4244   Protein of unknown function (DUF4244)


Domain annotation for each model (and alignments):
>> DUF4244  Protein of unknown function (DUF4244)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.1   6.1e-06      0.11       9      22 ..      22      35 ..      15      38 .. 0.81

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 6.1e-06
     DUF4244  9 edaGmsTaEYAvgt 22
                +++G++T+EYA +t
  KOO22379.1 22 DEDGAATVEYAGVT 35
                69*********665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (80 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       337  (0.0187964); expected 358.6 (0.02)
Passed bias filter:                      255  (0.0142228); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.23s 00:00:00.60 Elapsed: 00:00:00.41
# Mc/sec: 585.76
//
Query:       KOO22380.1  [L=196]
Description: acyl carrier protein phosphodiesterase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    5.5e-28   98.0   0.0    6.1e-28   97.9   0.0    1.0  1  Flavodoxin_2  Flavodoxin-like fold
    2.2e-12   47.0   0.0    2.8e-12   46.7   0.0    1.1  1  FMN_red       NADPH-dependent FMN reductase


Domain annotation for each model (and alignments):
>> Flavodoxin_2  Flavodoxin-like fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   97.9   0.0   6.8e-32   6.1e-28       1     194 [.       3     193 ..       3     196 .] 0.84

  Alignments for each domain:
  == domain 1  score: 97.9 bits;  conditional E-value: 6.8e-32
                   -EEEEEE--TTGGCCHHHCHHHHHHHHHCCCTT.TEEEEEEHHCCT-----CCCCHC....CHHHHTTC.HHHHHHH.HHHHHCSSEEEEEEE-BTT CS
  Flavodoxin_2   1 mkiLiinahprpeksfssalaqafvealekagp.hevtvrdLyadflpvlttrdlaa....klayeekp.adveseq.iekllaadaivlqfPlwwf 90 
                   +++L+++++ + e+  s++l ++++++l++ +    vt++dL +d lp ++ +  aa    ++++e+ +   +++ + ie+l+aad++v+++P+++f
    KOO22380.1   3 KNVLVLKCSVKSEGGASNKLIARVLAKLNAGSDaVVVTTHDLGTDSLPPINGAFCAAmwspEKSPEQ-AeTLAKAMAfIEDLRAADVVVIGCPIYNF 98 
                   69******************************9977****************999997753355555.55999999999****************** PP

                   B--HHHHHHHHHHS-TTTSC.EETTCSSCCCCTTTTSEEEEEEEESS-GGGSSTTSSS-S-HHHHHHHHHHHHHHTT-EEEEEEEEESCTCCCHHHH CS
  Flavodoxin_2  91 gvPailKgwiDrvltagfaf.yteeggegrgggLkgkkalvivttGgpeesyqerglegaamdellpplrgilgfiGikdvepvlvegvagaedeea 186
                   g  a lK ++D v+ ++ +f y +    + g++ +gkka++++++ g+          g + d++   l++ilgfiGikd ++v v   a + +e+ 
    KOO22380.1  99 GPAATLKSFFDMVVMNNVTFkYVDGA--PVGTLPEGKKAIICYSSAGT--------PVGGPSDFASGWLKHILGFIGIKDSTIVGVGCSAYPGQEDR 185
                   ********************887666..6445555**********999........234466777777****************9866555555554 PP

                   HHHHHHHH CS
  Flavodoxin_2 187 laealerl 194
                    +++ e++
    KOO22380.1 186 DKQEEEQI 193
                   45555554 PP

>> FMN_red  NADPH-dependent FMN reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.7   0.0   3.1e-16   2.8e-12       3     112 ..       5     121 ..       4     168 .. 0.73

  Alignments for each domain:
  == domain 1  score: 46.7 bits;  conditional E-value: 3.1e-16
                 EEEE.ES--STT-HHHHHHHHHHCCT-T.T-CEEEEETTTS.--.........---HCHGHT.....CGGSHHHHHHHHHHHH-SCEEEEEEECTTCE- CS
     FMN_red   3 ilvi.sGSlrkgsntrklaewaaealkeagaevelidladlilpc.......alcdkdlese.....gqtsddvaellekiaaadaliivtPeYngsys 88 
                 +lv+ +  +++g+ + kl+ ++++ l++ g ++ +++ +dl   +       a+c + +  e      +t +++ +++e ++aad+++i++P+Yn ++ 
  KOO22380.1   5 VLVLkCSVKSEGGASNKLIARVLAKLNA-GSDAVVVTTHDL-GTDslppingAFCAAMWSPEkspeqAETLAKAMAFIEDLRAADVVVIGCPIYNFGPA 101
                 7888566666889999999999999955.666666665554.22223447885566555444656677777888************************* PP

                 HHHHHHHHCHT-.SSCHCCTT-EE CS
     FMN_red  89 gllKnalDrlsrtrgkkelrgKpv 112
                 + lK+++D+++     + ++ K+v
  KOO22380.1 102 ATLKSFFDMVV----MNNVTFKYV 121
                 **********9....444444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (196 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       444  (0.0247643); expected 358.6 (0.02)
Passed bias filter:                      417  (0.0232584); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.43u 0.28s 00:00:00.71 Elapsed: 00:00:00.43
# Mc/sec: 1356.78
//
Query:       KOO22381.1  [L=276]
Description: hypothetical protein Ctob_007652, partial [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    7.9e-11   41.9   0.2    1.1e-10   41.3   0.2    1.3  1  WW              WW domain
  ------ inclusion threshold ------
       0.11   12.8   0.2       0.28   11.5   0.0    1.7  2  PDZ_2           PDZ domain


Domain annotation for each model (and alignments):
>> WW  WW domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.3   0.2   1.3e-14   1.1e-10       1      31 []     201     230 ..     201     230 .. 0.99

  Alignments for each domain:
  == domain 1  score: 41.3 bits;  conditional E-value: 1.3e-14
                 X-TTEEEEE-TTTT-EEEEETTT--EESS-- CS
          WW   1 LPpGWeeqwdpdsGrvYYyNheTgetqWekP 31 
                 LP+GW + + pd GrvYY++  T++t+W++P
  KOO22381.1 201 LPEGWMATKAPD-GRVYYFHAATKKTSWTRP 230
                 8***********.*****************9 PP

>> PDZ_2  PDZ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   3.2e-05      0.28      17      58 ..      28      68 ..      16      76 .. 0.82
   2 ?   -3.3   0.1       1.3   1.2e+04      22      34 ..     191     203 ..     190     206 .. 0.80

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 3.2e-05
                EEEEE-TTSGGGGT.--TT-EEEEETTB--SSHHHHHHHHHT CS
       PDZ_2 17 lvvsVkeggPaakaglkagDvilkvdgkkvksledlislllk 58
                lv++V++++ a+++ ++ gD++++++ ++   +++l++++ k
  KOO22381.1 28 LVIEVDPNSSASGE-IAVGDKVVEFERYAFPAESSLQEAIEK 68
                689******99999.*************99999999998874 PP

  == domain 2  score: -3.3 bits;  conditional E-value: 1.3
                 -TTSGGGGT.--T CS
       PDZ_2  22 keggPaakaglka 34 
                 ++++Paa+a l  
  KOO22381.1 191 NPAMPAAEAPLPE 203
                 6789***997765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (276 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       309  (0.0172346); expected 358.6 (0.02)
Passed bias filter:                      194  (0.0108205); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.47u 0.28s 00:00:00.75 Elapsed: 00:00:00.45
# Mc/sec: 1850.90
//
Query:       KOO22382.1  [L=136]
Description: glutathione peroxidase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      2e-28   98.1   0.0    2.3e-28   97.9   0.0    1.0  1  GSHPx     Glutathione peroxidase
     0.0096   15.8   0.0      0.012   15.6   0.0    1.2  1  AhpC-TSA  AhpC/TSA family


Domain annotation for each model (and alignments):
>> GSHPx  Glutathione peroxidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   97.9   0.0   2.6e-32   2.3e-28       1     108 []      10     122 ..      10     122 .. 0.95

  Alignments for each domain:
  == domain 1  score: 97.9 bits;  conditional E-value: 2.6e-32
                 GGGBEEEBTTSSEEEGGGGTTSEEEEEEEESSSTTHH.HHHHHHHHHHHH.GGGTEEEEEEEE-TTTT---S-GGGHHHTSSHT...TT-SSEEB--BB CS
       GSHPx   1 iyelsakdidgekvkleklrgkvvlivnvaskCglte.qykeleelqkry.kdkglvilgfPCnqfgkqepgsdeeikkfrqgk...yevtfellekie 94 
                 +y++sa d +g+ v++ ++ gkvvl++nvas+C +t   y +++elq+r+ +d  + il+fPCnqf k+ep s  e+ +f+++k    + t ++ +k++
  KOO22382.1  10 LYDFSAPDANGDIVDFARYCGKVVLVINVASRCDFTGpMYDHIRELQNRFgADDDFKILAFPCNQFLKREPLSAVEVCRFAEDKgikVGATVHIYDKVH 108
                 69**********************************99************45789*************************998775567899******* PP

                 SSSTTB-HHHHHHH CS
       GSHPx  95 vnGekedplykflk 108
                 v G+ ++pl+k+lk
  KOO22382.1 109 VAGKSAHPLWKWLK 122
                 ************98 PP

>> AhpC-TSA  AhpC/TSA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.0   1.3e-06     0.012       7      64 ..      12      69 ..       9     101 .. 0.72

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 1.3e-06
                --EEESTTCEEEECHHHTTSEEEEEEEST..ST-CCHHHHHHHHHHCHHHCC.CTTEEEEE CS
    AhpC-TSA  7 dfelknadgetvslsdykgkpvvlffypk..dwcpvCttelpalaklyeefk.ergvevig 64
                df++++a+g+ v+++ y gk+v++  +++  d++ + ++++++l++   +f  + ++++++
  KOO22382.1 12 DFSAPDANGDIVDFARYCGKVVLVINVASrcDFTGPMYDHIRELQN---RFGaDDDFKILA 69
                9****************99777666555513566666666665555...444234566665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (136 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       258  (0.0143901); expected 358.6 (0.02)
Passed bias filter:                      243  (0.0135535); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.36u 0.25s 00:00:00.61 Elapsed: 00:00:00.38
# Mc/sec: 1070.04
//
Query:       KOO22383.1  [L=495]
Description: enolase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   9.7e-154  510.9   0.3   1.6e-153  510.2   0.3    1.3  1  Enolase_C  Enolase, C-terminal TIM barrel domain
    2.6e-56  189.4   0.1    5.7e-56  188.3   0.1    1.6  1  Enolase_N  Enolase, N-terminal domain
    4.9e-11   42.6   0.0    8.6e-11   41.8   0.0    1.3  1  MR_MLE_C   Enolase C-terminal domain-like
    2.6e-07   30.1   0.1    5.3e-07   29.0   0.1    1.4  1  MAAL_C     Methylaspartate ammonia-lyase C-terminus


Domain annotation for each model (and alignments):
>> Enolase_C  Enolase, C-terminal TIM barrel domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  510.2   0.3  3.5e-157  1.6e-153       2     293 ..     200     491 ..     199     493 .. 0.99

  Alignments for each domain:
  == domain 1  score: 510.2 bits;  conditional E-value: 3.5e-157
                 -EE-EE-EEEEE-GGGSSSS--SSEEEEE-TT-SSHHHHHHHHHHHHHHHHHHHHHCC.GGGG-B-TTS-B----SSHHHHHHHHHHHHHHCT-TCTBE CS
   Enolase_C   2 lvlPvPalnvinGGshagnklalqefmilPvgassfkealrlGaevyhklksvlkkkygksatnvGdeGGfaPnlqsnkealdliveaiekaGykgkvk 100
                 + +PvPa+nvinGGshagnkla+qefmilPvgassf+ea+++G+evyh+lk+v++kkyg++a nvGdeGGfaPn+ +nke+l liveaie aGy+gkvk
  KOO22383.1 200 MYMPVPAFNVINGGSHAGNKLAMQEFMILPVGASSFTEAMKMGSEVYHNLKKVISKKYGQDACNVGDEGGFAPNILENKEGLLLIVEAIEMAGYTGKVK 298
                 579************************************************************************************************ PP

                 EEEE--GGGCEETCTTEEECTTTTTT..GGCEEEHHHHHHHHHHHHHHS-EEEEES-S-TT-HHHHHHHHHHHTTTSEEEESTTTTT-HHHHHHHHHCT CS
   Enolase_C 101 ialdvassefykekdkkydldfkeeesdkskkltseqladlykelvkkyPivsiedpldeddweawkklteelgdkvqivGddltvtnpkrlkeaiekk 199
                 i++dva+sef+k++dk ydldfk+e +d s+klt e+l++ly++++ ++P+vsiedp+d+dd+ ++k++t+++g+ vq+vGddl+vtnp+r+++ai+++
  KOO22383.1 299 IGMDVAASEFFKADDKMYDLDFKTEPNDGSQKLTGEKLQELYESFCADFPMVSIEDPFDQDDFASYKRMTAKIGESVQVVGDDLLVTNPTRVQKAIDEG 397
                 *************************************************************************************************** PP

                 --SEEEE-HHHH-SHHHHHHHHHHHHHTT-EEEEE--SC--S--HHHHHHHHCT-SEEE---S-SHHHHHHHHHHHHHHHHHGCC-EE-GGGCT CS
   Enolase_C 200 aanalllkvnqiGsltesleavklakeagygvvvshrsGetedttiadlavglsaGqiktGaparserlakynqllrieeelgekakyaGkkvr 293
                 a+nalllkvnqiGs+te++eav++ak+ag+gv+ shrsGeted++iadlavgl++GqiktGap+rserlakynqllrieeelge+a+y+G+ +r
  KOO22383.1 398 ACNALLLKVNQIGSITEAIEAVNMAKKAGWGVMTSHRSGETEDSFIADLAVGLKTGQIKTGAPCRSERLAKYNQLLRIEEELGEHAIYTGAAFR 491
                 ******************************************************************************************9987 PP

>> Enolase_N  Enolase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  188.3   0.1   1.3e-59   5.7e-56       1     131 []      54     189 ..      54     189 .. 0.98

  Alignments for each domain:
  == domain 1  score: 188.3 bits;  conditional E-value: 1.3e-59
                 EEEEEEEEEE-TTS-EEEEEEEEETTC-EEEEE--B-BSSSSSS-B----SSTTSGGGT--HHHHHHHHHTHHHHHTTSBTT-HHHHHHHHH.HHH-ST CS
   Enolase_N   1 IkkvkareildSrGnpTvevevttedgalgraavpsGaStgekealelrDgdkkrylgkgvekavenvnekiapaligldvtdqeeiDklli.elDgte 98 
                 I+kvkar+i+dSrGnpT+ev+vtt++++  +aavpsGaStg +ealelrDgdk++y+gkgv+kav+nvn++iapa++g++++dq++iD+l++ elDg++
  KOO22383.1  54 ITKVKARQIFDSRGNPTIEVDVTTTKSK-YTAAVPSGASTGIYEALELRDGDKAHYMGKGVSKAVDNVNSIIAPAIVGKSPADQKAIDDLMVqELDGSK 151
                 89**********************8776.5*************************************************************889***** PP

                 T.....-TTT-HHHHHHHHHHHHHHHHHHHTS-HHHHH CS
   Enolase_N  99 n.....ksklGaNailavSlAvakaaAkakelplyryl 131
                 n     ksklGaNail+vS+Av+ka+A++k++ply+++
  KOO22383.1 152 NewgwsKSKLGANAILGVSMAVCKAGAASKGMPLYKHI 189
                 ************************************97 PP

>> MR_MLE_C  Enolase C-terminal domain-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.8   0.0   1.9e-14   8.6e-11      60     173 ..     334     452 ..     324     480 .. 0.80

  Alignments for each domain:
  == domain 1  score: 41.8 bits;  conditional E-value: 1.9e-14
                 HHHHHHHHHH.GGGTESEEESSSSTTTHHHHHHHHHH.HH.SSEEEESTTSSS.HHHHHHHHHHTSESEEEEBHHHHTSHHHHHHHHHHHHHTT-EEEE CS
    MR_MLE_C  60 atAirvarel.eeldllwlEEPvppeddleglaelra.ra.sipiaagEslys.radfrelleagavdivqpdvsrvgGitearkvaalaeafgvpvap 154
                 ++ +++ + + +++ +  +E+P+ + dd +++++ +a +  s++++++  l + + ++++++++ga+ ++ ++v+++g itea++ +++a+++g+ v+ 
  KOO22383.1 334 EKLQELYESFcADFPMVSIEDPFDQ-DDFASYKRMTAkIGeSVQVVGDDLLVTnPTRVQKAIDEGACNALLLKVNQIGSITEAIEAVNMAKKAGWGVMT 431
                 555566666656688889******9.78********985589*******98877******************************************887 PP

                 BS.CS.SHHHHHHHHHHHHTT CS
    MR_MLE_C 155 Hs.gs.gglglaaslhlaaai 173
                  +  + +  +++a l +   +
  KOO22383.1 432 SHrSGeTEDSFIADLAVGLKT 452
                 662222466666666665555 PP

>> MAAL_C  Methylaspartate ammonia-lyase C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.0   0.1   1.2e-10   5.3e-07     114     217 ..     349     453 ..     332     459 .. 0.82

  Alignments for each domain:
  == domain 1  score: 29.0 bits;  conditional E-value: 1.2e-10
      MAAL_C 114 ldagskeeqierlaelreklkekgikvelvaDeWcnt.ledirefvdaeaadlvqiktPDlGginntieavlyckekgvgaylGGscnetdvsarvsvh 211
                 + + + + + + +a+ +++ ++ g +v++v D+   t    +++ +d++a++++ +k+  +G+i+++ieav ++k+ g g+++   + et+ s  +   
  KOO22383.1 349 MVSIEDPFDQDDFASYKRMTAKIGESVQVVGDDLLVTnPTRVQKAIDEGACNALLLKVNQIGSITEAIEAVNMAKKAGWGVMTSHRSGETEDSFIADLA 447
                 44444444445566667777788999*****9986651678**************************************************99888888 PP

      MAAL_C 212 valatr 217
                 v+l t+
  KOO22383.1 448 VGLKTG 453
                 877765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (495 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       488  (0.0272185); expected 358.6 (0.02)
Passed bias filter:                      415  (0.0231469); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.53u 0.26s 00:00:00.79 Elapsed: 00:00:00.43
# Mc/sec: 3484.53
//
Query:       KOO22384.1  [L=826]
Description: phospholipase a-2-activating protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    5.7e-35  118.8  18.6    4.1e-05   24.3   0.6    7.7  7  WD40          WD domain, G-beta repeat
      7e-31  106.8   0.2    1.3e-30  106.0   0.2    1.4  1  PFU           PFU (PLAA family ubiquitin binding)
    1.3e-27   96.8   6.3    1.9e-27   96.2   6.3    1.2  1  PUL           PUL domain
    6.1e-05   23.0   0.0       0.35   10.9   0.0    3.4  3  BBS2_Mid      Ciliary BBSome complex subunit 2, middle region
  ------ inclusion threshold ------
        0.9    9.6   5.4        4.1    7.5   0.4    3.5  3  Dimerisation  Dimerisation domain


Domain annotation for each model (and alignments):
>> WD40  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.8   0.0     7e-08   0.00025       5      37 ..      10      45 ..       6      46 .. 0.82
   2 !   13.4   0.9     3e-05      0.11       2      38 .]      57      93 ..      56      93 .. 0.90
   3 !   22.4   0.1   4.3e-08   0.00016       3      38 .]      99     135 ..      97     135 .. 0.92
   4 !   16.9   0.0   2.5e-06    0.0088       1      37 [.     137     175 ..     137     176 .. 0.78
   5 !   24.3   0.6   1.1e-08   4.1e-05       2      37 ..     179     214 ..     178     215 .. 0.78
   6 !   21.3   0.0     1e-07   0.00037       2      38 .]     219     255 ..     218     255 .. 0.91
   7 !    5.7   0.1    0.0082        29      10      37 ..     266     293 ..     258     294 .. 0.81

  Alignments for each domain:
  == domain 1  score: 21.8 bits;  conditional E-value: 7e-08
                EEEESS....SSEEEEEEETTSSEEEEEETTSEEEEE CS
        WD40  5 rtltGH....ssvtslafspdgawlasGsdDgtvriW 37
                 tl  H    ++v+s++  +dga + +Gs+D+tvriW
  KOO22384.1 10 ATLPRHeekeNDVRSVDSLDDGAIV-TGSRDRTVRIW 45
                667778764456************7.7********** PP

  == domain 2  score: 13.4 bits;  conditional E-value: 3e-05
                EEEEEEESSSS.EEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40  2 qclrtltGHss.vtslafspdgawlasGsdDgtvriWd 38
                +c +tl GH++ v  +++ p+g   as+s D++v  Wd
  KOO22384.1 57 TCNTTLIGHTHyVQRVCVLPHGGI-ASCSNDKHVIEWD 93
                58999****667************.79999****9998 PP

  == domain 3  score: 22.4 bits;  conditional E-value: 4.3e-08
                 EEEEEESSSS.EEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40   3 clrtltGHss.vtslafspdgawlasGsdDgtvriWd 38 
                 +lr+l+GH++ v+++a+s    ++ s+s+D+t r+W+
  KOO22384.1  99 PLRVLEGHTDvVSCVAVSVATGMIYSASWDKTARVWK 135
                 89******8857******99999*************6 PP

  == domain 4  score: 16.9 bits;  conditional E-value: 2.5e-06
                 TEEEEEEESS.SSEEEEE..EETTSSEEEEEETTSEEEEE CS
        WD40   1 gqclrtltGH.ssvtsla..fspdgawlasGsdDgtvriW 37 
                 g c+r+l+GH s  +++      dg+ l++++ D+t+++W
  KOO22384.1 137 GACVRVLKGHeSALWAVMplDELDGQTLTASG-DKTIKLW 175
                 57********87766554444449999*9888.******* PP

  == domain 5  score: 24.3 bits;  conditional E-value: 1.1e-08
                 EEEEEEESSSS.EEEEEEETTSSEEEEEETTSEEEEE CS
        WD40   2 qclrtltGHss.vtslafspdgawlasGsdDgtvriW 37 
                 +c +t+tGH++ v++l++ +   +l+++  Dgtvr+W
  KOO22384.1 179 TCSHTYTGHTDvVRALCWVSGMGFLSAAN-DGTVRLW 214
                 599******8857***6666666665444.******* PP

  == domain 6  score: 21.3 bits;  conditional E-value: 1e-07
                 EEEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40   2 qclrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 
                  cl ++ +  s+v+++++ p+g +l ++s+D++vr+W+
  KOO22384.1 219 GCLSVFQASeSFVYAISVLPSGEYL-TCSEDRNVRLWS 255
                 599999999888************9.6999*******5 PP

  == domain 7  score: 5.7 bits;  conditional E-value: 0.0082
                 S.SSEEEEEEETTSSEEEEEETTSEEEEE CS
        WD40  10 H.ssvtslafspdgawlasGsdDgtvriW 37 
                 H s v++l+   +g+ +a G+ Dg+ ++W
  KOO22384.1 266 HpSTVWALKALANGDIVA-GCADGNGYVW 293
                 8788************86.888**98888 PP

>> PFU  PFU (PLAA family ubiquitin binding)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  106.0   0.2   3.6e-34   1.3e-30       1     110 [.     344     456 ..     344     458 .. 0.90

  Alignments for each domain:
  == domain 1  score: 106.0 bits;  conditional E-value: 3.6e-34
         PFU   1 kpGkkeGqvklvkeee.gkveayqwsaaeekWekiGevvgsee....ssskkkeyeGkeYDyvfdvdiedgkpplkLpynksdnpyeaAekFleknels 94 
                 +pG++eGq+k++k+e  g+  +yqws a+++Wek+Gev+++++    +   kk++eGkeYDyvfd+d++ g   l+Lp+n++d+p++aA++++ k+  +
  KOO22384.1 344 QPGQREGQTKIIKDEGtGTPFLYQWSVASGSWEKVGEVTNAKGdsssTMFGKKVFEGKEYDYVFDIDLN-G-SALQLPFNRGDDPWMAAQQWIWKHGFE 440
                 68**********987548899******************88665544666899***************8.4.4589*********************** PP

         PFU  95 qsyleqivnFiikntk 110
                 q +l+ i+n ii+n+ 
  KOO22384.1 441 QGFLDAIANHIITNAP 456
                 *************975 PP

>> PUL  PUL domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   96.2   6.3   5.4e-31   1.9e-27       2     237 ..     536     784 ..     535     818 .. 0.76

  Alignments for each domain:
  == domain 1  score: 96.2 bits;  conditional E-value: 5.4e-31
         PUL   2 PqktyllfkkanldkllkKlkelNakllsagqkdlalsdeelatLeallaale........ssseatqlelllkl..ltsWppedrfPalDLlRlllld 90 
                 P   +l+f+ ++ d +l+Kl ++N ++ +ag +   l++++ a+L +l+ +l+        s+s+a +l+l++++  l sWp   +fP +DL+Rll+l+
  KOO22384.1 536 PSAPMLTFDVCKHDGVLAKLMQFNGEMHAAG-EATPLDESQAAALAKLVGTLKqpnrfhatSVSAA-ELALFTSSggLLSWPLPRLFPCVDLFRLLVLH 632
                 666789**********************997.4679****************99998875322222.555554332244******************** PP

         PUL  91 prvsayfaeeeggktissllslllssals.ssapkalennrmlalRllaNlFssplgrelllskaeslletleslltssllssnknlrialatlllNla 188
                 p+++++++ +    ++  ll ll++++   ++++k+  + +++ lR++aNl s  ++r  ++s+a+sl++ l+  ++    s     r+a+ ++l+N+ 
  KOO22384.1 633 PSAAQHLSAAAPP-LVPRLLRLLAVAQTAaAADDKPAAAAVLMLLRTCANLVSRYELRPMVASSASSLVDVLSAPIE----SGPTQPRLAAVSILFNVC 726
                 *****99966666.77777777666666655677999999*********************************8888....667899************ PP

         PUL 189 vllhk.....skdelseedqvellaallealee...........eeedsEalyRlLvAlGtlvya 237
                 +ll++     +        ++++  ++l+al+            e +++E l+RlL++l  l+  
  KOO22384.1 727 MLLSAkdlapE-------TALQMDGVALQALSLlqlalsvpallEPTEEESLFRLLATLNALLEV 784
                 ***76555541.......3333333333333223333333544469*************999855 PP

>> BBS2_Mid  Ciliary BBSome complex subunit 2, middle region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.7   0.0     0.074   2.6e+02      11      46 ..      29      64 ..      22     104 .. 0.71
   2 !   10.9   0.0   9.7e-05      0.35      14      66 ..     162     215 ..     151     217 .. 0.83
   3 !    5.8   0.0    0.0038        13      14      62 ..     241     290 ..     233     301 .. 0.87

  Alignments for each domain:
  == domain 1  score: 1.7 bits;  conditional E-value: 0.074
    BBS2_Mid 11 geneLvvgsddfeirvfkeeelvaeitetekvvsla 46
                ++  +v gs d ++r+++  +    +t t + + + 
  KOO22384.1 29 DDGAIVTGSRDRTVRIWRPVSTDEGVTYTCNTTLIG 64
                556799999999999998777666666665555555 PP

  == domain 2  score: 10.9 bits;  conditional E-value: 9.7e-05
    BBS2_Mid  14 eLvvgsddfeirvfkeeelvaeitet.ekvvslarlekerfayaleNGtvgvye 66 
                 + + +s d +i+++ +++  ++ t + + v +l+ +++  f+ a + Gtv ++e
  KOO22384.1 162 QTLTASGDKTIKLWTGDTCSHTYTGHtDVVRALCWVSGMGFLSAANDGTVRLWE 215
                 56789***************999865156679******************9875 PP

  == domain 3  score: 5.8 bits;  conditional E-value: 0.0038
    BBS2_Mid  14 eLvvgsddfeirvfkee.elvaeitetekvvslarlekerfayaleNGtv 62 
                 e + +s+d ++r+++   +lv+ i   + v +l++l + +++++ + G  
  KOO22384.1 241 EYLTCSEDRNVRLWSSAgDLVQSIPHPSTVWALKALANGDIVAGCADGNG 290
                 56899********98755************************99998764 PP

>> Dimerisation  Dimerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.0      0.92   3.3e+03      22      38 ..     254     268 ..     250     273 .. 0.82
   2 ?    7.5   0.4    0.0011       4.1      36      51 .]     640     655 ..     633     655 .. 0.84
   3 ?    2.1   0.3     0.054   1.9e+02      21      50 ..     748     778 ..     738     779 .. 0.84

  Alignments for each domain:
  == domain 1  score: -1.8 bits;  conditional E-value: 0.92
  Dimerisation  22 plspsEiaskLptknpe 38 
                   + s+ ++++++p  +p+
    KOO22384.1 254 WSSAGDLVQSIP--HPS 268
                   7899********..555 PP

  == domain 2  score: 7.5 bits;  conditional E-value: 0.0011
  Dimerisation  36 npeapvlldRlLRlLa 51 
                      ap+l+ RlLRlLa
    KOO22384.1 640 SAAAPPLVPRLLRLLA 655
                   4789***********8 PP

  == domain 3  score: 2.1 bits;  conditional E-value: 0.054
  Dimerisation  21 kplspsEiaskLpt.knpeapvlldRlLRlL 50 
                   ++ls+ ++a ++p    p+    l RlL  L
    KOO22384.1 748 QALSLLQLALSVPAlLEPTEEESLFRLLATL 778
                   789**********77*****99**9*99766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (826 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       467  (0.0260472); expected 358.6 (0.02)
Passed bias filter:                      346  (0.0192983); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.61u 0.25s 00:00:00.86 Elapsed: 00:00:00.39
# Mc/sec: 6308.42
//
Query:       KOO22385.1  [L=246]
Description: hypothetical protein Ctob_003537, partial [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
     0.0039   16.6   0.6      0.009   15.4   0.6    1.5  1  DUF632    Protein of unknown function (DUF632)
  ------ inclusion threshold ------
      0.066   12.9   1.3        7.4    6.3   0.2    2.5  2  SSXT      SSXT protein (N-terminal region)
       0.08   13.1   0.0       0.21   11.8   0.0    1.7  2  DUF4470   Domain of unknown function (DUF4470)
        3.5    7.8  12.1       0.13   12.4   2.8    3.1  3  YebO      YebO-like protein


Domain annotation for each model (and alignments):
>> DUF632  Protein of unknown function (DUF632)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.6     2e-06     0.009     117     175 ..     142     200 ..     136     202 .. 0.92

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 2e-06
      DUF632 117 leekgaesskidktraavkklstkikvaiqsvdsiskrIekLRDeeLqpqLveLiqgli 175
                   e+ +++ ++d+  a+  +l+ k k ++   d+ +k Ie+LR+ +L  q+ +L   l+
  KOO22385.1 142 VRERTEQRANVDALHAVCYELQLKCKTTLDELDENTKLIERLRERDLEHQVAALRAALL 200
                 568899999*******************************************9988775 PP

>> SSXT  SSXT protein (N-terminal region)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.3   0.2    0.0017       7.4       8      30 ..      76      98 ..      72     129 .. 0.78
   2 ?    5.0   0.1    0.0041        18      13      25 ..     173     185 ..     167     190 .. 0.87

  Alignments for each domain:
  == domain 1  score: 6.3 bits;  conditional E-value: 0.0017
        SSXT  8 qIqklLDENsqLIqtIielqnkG 30
                ++q+  DEN qL  +I e+q + 
  KOO22385.1 76 ELQARADENLQLQHAIFEQQREH 98
                567777**************873 PP

  == domain 2  score: 5.0 bits;  conditional E-value: 0.0041
        SSXT  13 LDENsqLIqtIie 25 
                 LDEN++LI+   e
  KOO22385.1 173 LDENTKLIERLRE 185
                 9*******98766 PP

>> DUF4470  Domain of unknown function (DUF4470)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   4.7e-05      0.21      36      66 ..      91     119 ..      62     121 .. 0.82
   2 ?   -3.3   0.0       2.4   1.1e+04      72      95 ..     138     161 ..     129     164 .. 0.52

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 4.7e-05
     DUF4470  36 lktiaslkpssksrklditlndneaeivaRn 66 
                 ++   +  +++ +rkl+++l+d +++++ R 
  KOO22385.1  91 IFEQQR--EHERQRKLHMHLCDADMALLRRA 119
                 444444..489999**************996 PP

  == domain 2  score: -3.3 bits;  conditional E-value: 2.4
     DUF4470  72 lllepddslgleeaaellleiwys 95 
                 ++ +++++++++ ++++l  + y 
  KOO22385.1 138 IAERVRERTEQRANVDALHAVCYE 161
                 444444555555555555555554 PP

>> YebO  YebO-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   2.8   2.9e-05      0.13      22      57 ..      79     117 ..      77     141 .. 0.70
   2 ?   -0.2   0.3      0.24   1.1e+03      38      54 ..     188     205 ..     162     227 .. 0.55
   3 ?   -0.7   0.1      0.34   1.5e+03      23      52 ..     226     242 ..     210     246 .] 0.58

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 2.9e-05
        YebO  22 vrAneqieLleelleqqk...rQnaLLrrLaeakkeqse 57 
                  rA e ++L++++ eqq+   rQ +L  +L++a+    +
  KOO22385.1  79 ARADENLQLQHAIFEQQReheRQRKLHMHLCDADMALLR 117
                 69***************9666799999999998765444 PP

  == domain 2  score: -0.2 bits;  conditional E-value: 0.24
        YebO  38 qkrQnaLLrr.Laeakke 54 
                 + +Q a Lr+ L+ea++ 
  KOO22385.1 188 LEHQVAALRAaLLEADAS 205
                 233444443335555544 PP

  == domain 3  score: -0.7 bits;  conditional E-value: 0.34
        YebO  23 rAneqieLleelleqqkrQnaLLrrLaeak 52 
                 r  +qi +l                Lae++
  KOO22385.1 226 RFQQQIGMLSDA-------------LAEQN 242
                 444555554443.............33333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (246 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1402  (0.0781973); expected 358.6 (0.02)
Passed bias filter:                      446  (0.0248759); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.47u 0.23s 00:00:00.70 Elapsed: 00:00:00.39
# Mc/sec: 1877.69
//
Query:       KOO22386.1  [L=6215]
Description: hypothetical protein Ctob_003539 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
   5.1e-153  497.6  54.0    2.1e-08   34.1   0.0   34.1 33  TIG         IPT/TIG domain
    1.8e-30  104.7   0.0       0.39   10.7   0.0   21.5 25  TIG_plexin  TIG domain
     0.0011   19.2   0.0     0.0044   17.3   0.0    2.0  1  fn3         Fibronectin type III domain
  ------ inclusion threshold ------
      0.018   15.0   4.4      0.044   13.7   4.4    1.6  1  PAN_1       PAN domain
       0.12   11.6   2.7        2.3    7.4   0.0    3.8  3  WT1         Wilm's tumour protein
        1.5    8.8   3.3        4.2    7.4   3.3    1.7  1  PAN_4       PAN domain


Domain annotation for each model (and alignments):
>> TIG  IPT/TIG domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.1   0.0   7.1e-12   2.1e-08       1      59 [.     314     376 ..     314     386 .. 0.97
   2 !   23.0   0.0   2.1e-08   6.4e-05       5      63 ..     526     604 ..     524     626 .. 0.92
   3 ?    4.7   0.0     0.011        32       3      45 ..     677     720 ..     676     727 .. 0.87
   4 !   17.8   0.4   8.9e-07    0.0027       1      26 [.     847     872 ..     847     905 .. 0.91
   5 ?   -2.8   0.0       2.4   7.1e+03       6      41 ..     958     994 ..     956     999 .. 0.87
   6 !   29.9   0.3   1.5e-10   4.5e-07       1      61 [.    1357    1415 ..    1357    1435 .. 0.92
   7 !   22.9   0.0   2.3e-08   6.7e-05       1      82 [.    1454    1535 ..    1454    1539 .. 0.85
   8 ?   -2.4   0.0       1.8   5.3e+03       4      62 ..    1545    1605 ..    1543    1615 .. 0.80
   9 !   17.9   0.0   8.2e-07    0.0024       1      54 [.    1924    2002 ..    1924    2074 .. 0.76
  10 ?    4.2   0.0     0.015        46       2      37 ..    2080    2114 ..    2079    2162 .. 0.79
  11 !   13.4   0.2   2.1e-05     0.062       7      85 .]    2200    2290 ..    2198    2290 .. 0.84
  12 !   10.3   0.0   0.00018      0.55       1      85 []    2294    2412 ..    2294    2412 .. 0.68
  13 !    9.8   0.1   0.00028      0.83       1      73 [.    2416    2516 ..    2416    2527 .. 0.77
  14 !   16.7   0.1   1.9e-06    0.0056       5      79 ..    2581    2656 ..    2579    2659 .. 0.92
  15 !    8.8   0.0   0.00056       1.7       5      41 ..    2997    3032 ..    2995    3081 .. 0.87
  16 !   30.6   0.1   8.6e-11   2.6e-07       2      78 ..    3172    3263 ..    3171    3270 .. 0.84
  17 ?    3.8   0.0      0.02        59       4      61 ..    3277    3360 ..    3273    3385 .. 0.62
  18 !   21.3   0.5   7.1e-08   0.00021       2      80 ..    3391    3489 ..    3390    3506 .. 0.90
  19 !   29.8   0.0   1.6e-10   4.8e-07       1      61 [.    3629    3701 ..    3629    3722 .. 0.90
  20 !   17.9   0.0   7.8e-07    0.0023       1      42 [.    3971    4011 ..    3971    4045 .. 0.94
  21 !    5.8   0.0    0.0049        15       1      37 [.    4108    4143 ..    4108    4153 .. 0.94
  22 !   27.8   1.5   6.6e-10     2e-06       1      61 [.    4329    4392 ..    4329    4405 .. 0.93
  23 !   10.1   0.3   0.00022      0.65       1      72 [.    4439    4533 ..    4439    4545 .. 0.78
  24 !   26.4   0.4   1.8e-09   5.3e-06       1      73 [.    4562    4660 ..    4562    4670 .. 0.75
  25 !   14.1   0.0   1.2e-05     0.037       5      79 ..    4680    4765 ..    4676    4771 .. 0.82
  26 !    8.6   0.0   0.00062       1.9       4      84 ..    4778    4865 ..    4775    4866 .. 0.88
  27 !   26.2   0.0     2e-09   6.1e-06       3      65 ..    4872    4936 ..    4870    4950 .. 0.90
  28 ?    3.8   0.1      0.02        61       1      73 [.    5272    5378 ..    5272    5391 .. 0.50
  29 !   13.4   0.0   2.1e-05     0.063       3      67 ..    5397    5463 ..    5394    5472 .. 0.94
  30 !   18.0   0.0   7.5e-07    0.0022       1      62 [.    5735    5797 ..    5735    5845 .. 0.82
  31 ?   -1.4   0.1      0.83   2.5e+03       6      20 ..    5856    5870 ..    5855    5881 .. 0.84
  32 !   15.1   0.0     6e-06     0.018       3      59 ..    5994    6052 ..    5992    6080 .. 0.89
  33 !    6.6   0.0    0.0027         8      31      84 ..    6156    6213 ..    6146    6214 .. 0.89

  Alignments for each domain:
  == domain 1  score: 34.1 bits;  conditional E-value: 7.1e-12
         TIG   1 PvissisPnsgsasgGttititGtnF....gtnssdssvtiggtpctvtasvssttlvcttPp 59 
                 P+iss++P+ g+asgG+ it++G++F       +s  ++++g+  + v +  + t lvc +P 
  KOO22386.1 314 PTISSLQPADGPASGGQEITVRGDGFmnlvAGGASAARCRFGTHTTRVLEIRNATLLVCAAPQ 376
                 9**********************************************************9997 PP

  == domain 2  score: 23.0 bits;  conditional E-value: 2.1e-08
         TIG   5 sisPnsgsasgGttititGtnF....................gtnssdssvtiggtpctvtasvssttlvcttPpgpsg 63 
                 ++s + g++ gGt++titG++F                     + +  +++++g + +t+     ++++vc tPp psg
  KOO22386.1 526 NVSTTGGPTTGGTLVTITGRGFaraaaratstrarfgtlwweRNATLAVRCRFGAAGSTTPIQLRDDEIVCPTPPLPSG 604
                 5677889************************************************9988777**************966 PP

  == domain 3  score: 4.7 bits;  conditional E-value: 0.011
         TIG   3 issisPnsgsasgGttititGtnF.gtnssdssvtiggtpctvt 45 
                 is + P+ g+++gGt++ i G+ +     +  ++++g  p++++
  KOO22386.1 677 ISELLPPGGPTAGGTQVQIAGRWLhAFAPHAAMCRFGKLPSPAI 720
                 89999****************99988889999999998888777 PP

  == domain 4  score: 17.8 bits;  conditional E-value: 8.9e-07
         TIG   1 PvissisPnsgsasgGttititGtnF 26 
                 P+issi+P +g++sgG  +t++G++F
  KOO22386.1 847 PTISSIFPVRGVFSGGVALTLKGHGF 872
                 9************************* PP

  == domain 5  score: -2.8 bits;  conditional E-value: 2.4
         TIG   6 isPnsgsasgGttititGtnF.gtnssdssvtiggtp 41 
                  +P  g+++gG+ + +   ++ + ++ ++++++g+++
  KOO22386.1 958 SFPLGGPVAGGSVVHVLSAGLlNRTDGTLRCRFGDAE 994
                 67999***********999999999999999999876 PP

  == domain 6  score: 29.9 bits;  conditional E-value: 1.5e-10
         TIG    1 PvissisPnsgsasgGttititGtnFgtnssdssvtiggtpctvtasvssttlvcttPpgp 61  
                  Pvis  sP+sg+++gGt +t+ G +F  +  ++ +++ ++ + +t   +s+ ++c+tP  p
  KOO22386.1 1357 PVISVASPASGPVAGGTVVTVGGFGF-GSGMQLECRFQTEVVYAT-VLNSSAVRCVTPLAP 1415
                  99************************.******************.************877 PP

  == domain 7  score: 22.9 bits;  conditional E-value: 2.3e-08
         TIG    1 PvissisPnsgsasgGttititGtnFgtnssdssvtiggtpctvta..svssttlvcttPpgpsgllnvsvlvdgaqlrsdntt 82  
                  P +ss+sP+sg+ +gGt ++++ + + +   d+++++g  + tv+a     s tl+c++P+++ + + + ++ +g+q +s++  
  KOO22386.1 1454 PEVSSFSPESGPLAGGTHVIVQASAL-AGGVDYRCRFGLPNRTVSAtyDDVSETLRCVAPAHA-AISALEITLNGQQYTSSGRL 1535
                  89************************.*****************9988777899*********.66666666666445554444 PP

  == domain 8  score: -2.4 bits;  conditional E-value: 1.8
         TIG    4 ssisPnsgsasgGttititGtnF..gtnssdssvtiggtpctvtasvssttlvcttPpgps 62  
                  +s++P++  + gG ++ ++ + F   +  + +++++g++p t     +++   c++Pp +s
  KOO22386.1 1545 RSLEPSRAASLGGALMHVSFDAFgqPSPFEAIRCRVGEAPPTEPLQYTDQWALCVVPPSYS 1605
                  6888888888888888888888877777788999999999877768888888888888775 PP

  == domain 9  score: 17.9 bits;  conditional E-value: 8.2e-07
         TIG    1 PvissisPnsgsasgGttititGtnF.......gtnssdssvtiggtpctvtasvssttl..................v 54  
                  P +s+i+P++g+ +gGt++ ++G+ +       ++ +  +++++g+ p  + + v+ t+l                   
  KOO22386.1 1924 PAVSKITPTTGPLAGGTLVRVSGSKLglghentDSFRAGYRCRYGDVPQLAGYLVNQTELelprishdlgsssatcppY 2002
                  789**********************************************999999999997777777777774444440 PP

  == domain 10  score: 4.2 bits;  conditional E-value: 0.015
         TIG    2 vissisPnsgsasgGttititGtnFgtnssdssvti 37  
                  v+ss  P sg+ +gGt ++i+ + +  n sds++++
  KOO22386.1 2080 VLSSALPLSGPQQGGTALLINASFL-GNGSDSRCRF 2114
                  679999***************9999.9999999987 PP

  == domain 11  score: 13.4 bits;  conditional E-value: 2.1e-05
         TIG    7 sPnsgsasgGttititG...tnFgtnssdssvtiggtpctvta.svssttlvcttPpgp............sgllnvsvlvdgaqlrsdnttftY 85  
                   P+ g+ +g tt+t+ G    +F   ++d+ +++g   +++t+ sv    l c++Pp              + ++++ v  +g q++++ +t++Y
  KOO22386.1 2200 DPPGGPLEGHTTVTLFGgfsGGF---TQDYVCRFGAVLVPATHqSVPTERLLCISPPLDnatvpelanvthARPVPLHVSLNG-QQFHSIGTYSY 2290
                  6999*************555555...*****************9999***********9888888888875557777777777.77777777777 PP

  == domain 12  score: 10.3 bits;  conditional E-value: 0.00018
         TIG    1 PvissisPnsgsasgGttititGtnF............gtnssdssvtiggtpctvta..................svssttlvcttPpgp.....s 62  
                  P  +s++P+sg+  gGt++ i G ++             +++  +s  i g+ +                      +   +tl+c +Pp       +
  KOO22386.1 2294 PAFDSLTPPSGPDRGGTQVSIVGVGLaanvqpranssePNSVVGVSADIVGQRALGLDgmhqfycrfgplgkvegtYAAASTLRCDSPPFGatgsvA 2390
                  66799*********************99999988777744444444444444444433555555555555555555888888899999988877654 PP

         TIG   63 gllnvsvlvdgaqlrsdnttftY 85  
                   ++ vsv+ ++ q +  + +f+Y
  KOO22386.1 2391 RTVLVSVTLND-QDYEPAYDFQY 2412
                  46777777776.66666666666 PP

  == domain 13  score: 9.8 bits;  conditional E-value: 0.00028
         TIG    1 PvissisPnsgsasgGttititG.tnF...............gtnssdssvtiggtpctvtasvssttlvcttPpgp............sgllnvsv 69  
                  P+is++ P++g++ g+t+i++ G + F                 ++ ds+   g   + + +  ++t l cttP+              +gl+++ +
  KOO22386.1 2416 PIISALLPPTGPTVGNTSIVVVGsSTFelidreshfasyacqVGDAADSRQSRGQRFAAIRSQADPTRLLCTTPALLlnisqrfgfrgdEGLFPLPF 2512
                  99*********************5556999996666666666566666666666666666669999********99988888888888877877777 PP

         TIG   70 lvdg 73  
                  +v  
  KOO22386.1 2513 TVSL 2516
                  7777 PP

  == domain 14  score: 16.7 bits;  conditional E-value: 1.9e-06
         TIG    5 sisPnsgsasgGttititG..tnFgtnssdssvtiggtpctvtasvssttlvcttPpgp.sgllnvsvlvdgaqlrsd 79  
                  s  P+sg+++g t++++ G  + + +  s +++++g +  + t+ ++   ++ctt p + +g+++v v  +g q+++d
  KOO22386.1 2581 SSLPTSGPSNGATSVVVYGrpREL-AGGSRYQCRVGPQLLEGTYLSDAGGIRCTTGPFAaNGTYSVEVSLNG-QQFTD 2656
                  5679***************999**.**********************************677**********.77765 PP

  == domain 15  score: 8.8 bits;  conditional E-value: 0.00056
         TIG    5 sisPnsgsasgGttititGtnFgtnssdssvtiggtp 41  
                  ++sP+sg++ gGt+++ +G  +      +++++g++p
  KOO22386.1 2997 AFSPTSGPSTGGTRVLMDGEAL-GHGYPYTCRFGNAP 3032
                  69********************.77777888888876 PP

  == domain 16  score: 30.6 bits;  conditional E-value: 8.6e-11
         TIG    2 vissisPnsgsasgGttititGtnFgtnssdssvtiggtpctvta..............svssttlvcttPpgp..sgllnvsvlvdgaqlrs 78  
                   +  +sP+sg+ +gGt++++ G n+ t  sd+++ +g+   + +               + s t lvcttPp+   + +l v v+ +g+q + 
  KOO22386.1 3172 AVLGLSPSSGPLAGGTRVLVLGANL-TGGSDYRCAFGTRSLQRSPvgnsttapvfaeaeTLSATMLVCTTPPHLapPRSLDVAVTLNGQQYSA 3263
                  56779********************.*************999999777777777777777777777********9777999999999944443 PP

  == domain 17  score: 3.8 bits;  conditional E-value: 0.02
         TIG    4 ssisPnsgsasgGttititGtnFgtnssdssvtiggtpctvta...........................svssttlvcttPpgp 61  
                   ++sP+sg+  g t +t++G  F +n sd+++++  ++    +                            v+ + l+c++Pp  
  KOO22386.1 3277 LALSPASGPRLGATEVTLSGGPF-ANGSDYRCRFIPNAQSSEYwresagvlggaeywnelgavnatvvgeAVNASALRCVSPPQL 3360
                  5789*******************.9999999999877766665444444444444444444333334444444444466666655 PP

  == domain 18  score: 21.3 bits;  conditional E-value: 7.1e-08
         TIG    2 vissisPnsgsasgGttititGtnF...................gtnssdssvtiggtpctvtasvssttl...vcttPpgpsgllnvsvlvdgaql 76  
                  ++ss+sP+sg+  gGt+++++G+++                   +t  + ++++++gt  +    ++ + +   +c+tP  ++ +++ + l+ + +l
  KOO22386.1 3391 TVSSVSPSSGPHHGGTRLVVHGHGLrlgahyccrldgivlpaslETAGRGTRLLWNGTHGVPA-ISNASAVdavRCITPDAAQPNMTNQTLTST-NL 3485
                  89********************************************************99999.8888888888*****999777777777777.66 PP

         TIG   77 rsdn 80  
                  +s++
  KOO22386.1 3486 TSSS 3489
                  6655 PP

  == domain 19  score: 29.8 bits;  conditional E-value: 1.6e-10
         TIG    1 PvissisPnsgsasgGttititGtnF.........gtnssdssvtiggtpctvta...svssttlvcttPpgp 61  
                  P  s+++P  g+++gGt++++tGt+F            ++d+++++g++ + v a   +v+++ ++ct+Pp +
  KOO22386.1 3629 PAFSAVYPLLGPPAGGTSVLLTGTGFhdfgrvsafPGAREDLRCRFGNETVFVLApttWVQESGVRCTSPPLS 3701
                  66799*********************************************99999999*************87 PP

  == domain 20  score: 17.9 bits;  conditional E-value: 7.8e-07
         TIG    1 PvissisPnsgsasgGttititGtnFgtnssdssvtiggtpc 42  
                  Pv+s i+P+ g+ +gGt + + G n+ +n +++++++gg++ 
  KOO22386.1 3971 PVLSRIHPTGGPLAGGTVVSLFGVNL-ANGTHYKCRFGGEAP 4011
                  99************************.***********9875 PP

  == domain 21  score: 5.8 bits;  conditional E-value: 0.0049
         TIG    1 PvissisPnsgsasgGttititGtnFgtnssdssvti 37  
                  P++++++P+sg+ +g  +i ++G n+ ++ s++++++
  KOO22386.1 4108 PILTAVYPMSGPLAGAFRIELSGANL-ADGSEYRCRF 4143
                  899***********************.9999999987 PP

  == domain 22  score: 27.8 bits;  conditional E-value: 6.6e-10
         TIG    1 PvissisPnsgsasgGttititGtnFgtnssdssvtiggtpctvta....svssttlvcttPpgp 61  
                  P+++sisP+sg+a gGt+i ++G n+ t+ s+++++++++  ++      ++  ++++c++Pp++
  KOO22386.1 4329 PTLTSISPSSGPALGGTRIAVSGANL-TSGSNYTCRFNEFSREALPgtleTSLGSSVRCIAPPVV 4392
                  99************************.****************99999988888899***99986 PP

  == domain 23  score: 10.1 bits;  conditional E-value: 0.00022
         TIG    1 PvissisPnsgsasgGttititGtnFgtnssdssvtiggtpctvtasvssttl...................vcttPpgp....sgllnvsvlvd 72  
                  P ++si+P+sg+++g t + i G    t  sd+++++ +++  + +  + t                     +c+tP+      +++  v v  +
  KOO22386.1 4439 PELDSITPSSGPSAGATVVDIGGVRPPTGGSDYRCRFVSAALANATALNTTATrglpsvtvhatfdetrgvvRCVTPGLIatnaTASAAVLVALN 4533
                  889**************************************999974444444666777777888888888899999988664444444444444 PP

  == domain 24  score: 26.4 bits;  conditional E-value: 1.8e-09
         TIG    1 PvissisPnsgsasgGttititGtnFgtnssdssvtiggtpctvtasvssttl..........................vcttPpgp.sg.llnvsv 69  
                  P++++isP++g+++g t++t++Gt +    sd+++++ + p+  + s+s ++                            c+tP+g  s+  l v v
  KOO22386.1 4562 PSVTAISPSCGPIEGATNLTVSGTQL-GGGSDNRCRFADRPSSPS-SSSQHSAtarrfggalvvnastsayydggsgslWCLTPAGLaSAvALYVEV 4656
                  99************************.999999999999999998.666665556777777777777777777777777888888874223444444 PP

         TIG   70 lvdg 73  
                  + +g
  KOO22386.1 4657 TLNG 4660
                  4444 PP

  == domain 25  score: 14.1 bits;  conditional E-value: 1.2e-05
         TIG    5 sisPnsgsasgGttititGtnF.....gtnssdssvtiggtpctvta.......svssttlvcttPpgpsgllnvsvlvdgaqlrsd 79  
                  +isP+sg+++g t + i G +      ++n  d+++++ +  +++            s ++ c++P g+ g+ ++ +  +g+q +s+
  KOO22386.1 4680 AISPASGPVNGATMLRIEGVGAvrglaSSNGCDVRCRFASGSSVAPLdtpavlpDLASGSVQCESPRGV-GSGTLELSLNGQQYSSS 4765
                  79*****************9999999************98888776678999999999999********.55555555555334444 PP

  == domain 26  score: 8.6 bits;  conditional E-value: 0.00062
         TIG    4 ssisPnsgsasgGttititGtnFgtnssdssvtiggtpctvtasvssttl.........vcttPpgpsgllnvsvlvdgaqlrsdnttft 84  
                    i P+ g+ +gGtt++++ +n+++  +d+++++ +   +++     t +          c+t p++ g  +v ++ +g q++s +++++
  KOO22386.1 4778 HRIAPPLGPLAGGTTVLLHASNLSAVGTDLRCRFSTLDGPFV-DAIATRVelaeggaalSCLTLPRAVGVDQVRITLNG-QQFSPPVQYS 4865
                  6788999****************************9999999.666666667888888899999999999999999999.9999999886 PP

  == domain 27  score: 26.2 bits;  conditional E-value: 2e-09
         TIG    3 issisPnsgsasgGttititGtnF...gtnssdssvtiggtpctvtasvssttlvcttPpgpsgll 65  
                  + si+P  ++  gG  +t++G +F   + + + ++++ig t +  t   + + ++cttPp ++++l
  KOO22386.1 4872 VHSIYPLATPERGGIVLTVHGEGFastDGQPELLRCQIGATTVIGT-LLNQSAVRCTTPPAQAAGL 4936
                  78*****************************************999.*************996544 PP

  == domain 28  score: 3.8 bits;  conditional E-value: 0.02
         TIG    1 PvissisPnsgsasgGttititGtnF............gtnssdssvtiggtpctvta...........svssttl............vcttPpgps 62  
                  P+i +isP  g++ g t++t+  +                 +    +++g+++++  +           + ++++l            +c+tP  ++
  KOO22386.1 5272 PIILAISPHAGPVRGQTRVTVIMS-AseagglpwrpdlIPLTARAECRFGSEKVVPASwgggiiatepyHDNESQLasppinatglalTCVTPMLTA 5367
                  788888888888888888887511.123344444444444444444555555555543333333333333333333555555555555666666666 PP

         TIG   63 gllnvsvlvdg 73  
                  g++++s+  + 
  KOO22386.1 5368 GQHPLSMSLNR 5378
                  66666666655 PP

  == domain 29  score: 13.4 bits;  conditional E-value: 2.1e-05
         TIG    3 issisPnsgsasgGttititGtnF..gtnssdssvtiggtpctvtasvssttlvcttPpgpsgllnv 67  
                  iss+ P+ g+  gGt++t+tGt      +++   +++g  ++ +t+      l+ct+P+ +++++++
  KOO22386.1 5397 ISSVLPSGGPRRGGTIVTLTGTLApaHVSARPALCRFGRHAVAATVDTAQGALRCTSPSAAAAGVEI 5463
                  9*********************9999999999***************************99887766 PP

  == domain 30  score: 18.0 bits;  conditional E-value: 7.5e-07
         TIG    1 PvissisPnsgsasgGttititGtnFgtnssdssvtiggtpctvta.svssttlvcttPpgps 62  
                  P i s+ P+ g++ gGt+i+++G  Fg+++s+ ++++g +  +  + +     l+c++P+ ++
  KOO22386.1 5735 PEIWSVAPSAGPVLGGTRILVRGLTFGISASEHRCRFGVDGLVDATrYEATGLLACISPALTD 5797
                  78999*********************************9887766657777778999999883 PP

  == domain 31  score: -1.4 bits;  conditional E-value: 0.83
         TIG    6 isPnsgsasgGttit 20  
                  ++P+sg+++gGt++ 
  KOO22386.1 5856 LHPASGPINGGTLLS 5870
                  58**********986 PP

  == domain 32  score: 15.1 bits;  conditional E-value: 6e-06
         TIG    3 issisPnsgsasgGttititGtnFgtnssdssvtiggtpctvta...svssttlvcttPp 59  
                  +  +sP++g++ g t++t+ G+ +    s +++++g++ +t+ +   + + + + c tP 
  KOO22386.1 5994 LALVSPACGPVGGETRLTVVGDQL-RGGSAYRCRLGNSSATNATyesTLQGDLIHCATPR 6052
                  5569********************.*****************988888888888998886 PP

  == domain 33  score: 6.6 bits;  conditional E-value: 0.0027
         TIG   31 sdssvtiggtpctvta...svssttlvcttPpgpsg.llnvsvlvdgaqlrsdnttft 84  
                   d+++++gg+ + + +      +  ++c++P +p+  ++++ v  +g+q + +ntt+t
  KOO22386.1 6156 CDYRCRFGGSGAATATgsfRERDGGIRCQAPIRPADtSVELWVSLNGQQFVPTNTTLT 6213
                  689999***9999998999999999*********777**********99999999876 PP

>> TIG_plexin  TIG domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.3   0.0      0.24     7e+02       2      52 ..     321     376 ..     320     381 .. 0.73
   2 !    9.8   0.0   0.00025      0.74      27      80 ..     574     627 ..     565     631 .. 0.81
   3 ?   -3.4   0.0       3.3     1e+04      21      38 ..     979     997 ..     969    1030 .. 0.77
   4 !    5.7   0.0    0.0049        15      24      56 ..    1385    1417 ..    1375    1434 .. 0.84
   5 ?    2.4   0.0     0.053   1.6e+02      24      59 ..    1482    1520 ..    1470    1531 .. 0.72
   6 ?   -3.7   0.0       4.1   1.2e+04      42      54 ..    2038    2050 ..    2021    2057 .. 0.82
   7 ?   -0.9   0.0      0.57   1.7e+03      37      89 .]    2135    2191 ..    2097    2191 .. 0.72
   8 !    6.3   0.0    0.0032       9.6       8      83 ..    2207    2284 ..    2200    2291 .. 0.71
   9 ?    4.6   0.0      0.01        31      25      54 ..    2354    2384 ..    2338    2405 .. 0.83
  10 ?    1.8   0.0     0.078   2.3e+02      47      89 .]    3128    3168 ..    3115    3168 .. 0.79
  11 ?    2.9   0.0     0.036   1.1e+02      24      57 ..    3199    3247 ..    3177    3257 .. 0.72
  12 ?   -2.9   0.0       2.3     7e+03      25      53 ..    3303    3359 ..    3281    3368 .. 0.57
  13 ?   -0.8   0.1      0.52   1.6e+03      43      71 ..    3460    3486 ..    3448    3496 .. 0.74
  14 !   10.7   0.0   0.00013      0.39      17      60 ..    3660    3707 ..    3659    3716 .. 0.82
  15 ?    3.6   0.0     0.022        64      43      79 ..    4060    4098 ..    3996    4106 .. 0.81
  16 !    6.2   0.1    0.0035        10      12      58 ..    4346    4396 ..    4335    4406 .. 0.75
  17 ?    3.0   0.0     0.033        99       2      70 ..    4446    4532 ..    4445    4559 .. 0.70
  18 ?   -2.0   0.0       1.2   3.6e+03       2      42 ..    4569    4608 ..    4568    4614 .. 0.80
  19 ?    0.6   0.0       0.2   5.8e+02       2      52 ..    4683    4746 ..    4682    4749 .. 0.69
  20 ?   -1.4   0.0      0.78   2.3e+03      11      34 ..    4791    4814 ..    4782    4839 .. 0.80
  21 ?    1.5   0.0     0.098   2.9e+02      27      54 ..    4905    4932 ..    4887    4944 .. 0.86
  22 ?   -3.4   0.0       3.4     1e+04      20      41 ..    5308    5329 ..    5306    5365 .. 0.66
  23 ?    2.8   0.0     0.039   1.2e+02      12      54 ..    5412    5457 ..    5401    5469 .. 0.70
  24 ?    3.2   0.0     0.029        87       2      52 ..    5999    6052 ..    5998    6061 .. 0.75
  25 ?    0.5   0.0      0.21   6.3e+02      26      51 ..    6157    6186 ..    6140    6195 .. 0.82

  Alignments for each domain:
  == domain 1  score: 0.3 bits;  conditional E-value: 0.24
  TIG_plexin   2 Psnisvsttseltltvenlpal....seklkCvFgdleese.atvsdnkvtCdtPk 52 
                 P+  + s  +e+t+  + + +l    ++  +C+Fg+++++  ++ + + + C+ P+
  KOO22386.1 321 PADGPASGGQEITVRGDGFMNLvaggASAARCRFGTHTTRVlEIRNATLLVCAAPQ 376
                 777777777888888887777776544477****9987776244558889999997 PP

  == domain 2  score: 9.8 bits;  conditional E-value: 0.00025
  TIG_plexin  27 lkCvFgdleeseat.vsdnkvtCdtPkpeelppipegkdhvtvkLsirsketgkd 80 
                 ++C+Fg + +++ + + d+++ C tP+  +  +  +g+++v+++L++rs++++ +
  KOO22386.1 574 VRCRFGAAGSTTPIqLRDDEIVCPTPPLPSGMA-LRGDSSVAAELTLRSGRATLP 627
                 69***988776655378**********977766.8899**********9977655 PP

  == domain 3  score: -3.4 bits;  conditional E-value: 3.3
  TIG_plexin  21 pal.seklkCvFgdleese 38 
                  +   ++l+C+Fgd+e ++
  KOO22386.1 979 LNRtDGTLRCRFGDAEGAA 997
                 44437899****9986554 PP

  == domain 4  score: 5.7 bits;  conditional E-value: 0.0049
  TIG_plexin   24 seklkCvFgdleeseatvsdnkvtCdtPkpeel 56  
                  +++l+C+F++  + + +++++ v+C tP + +l
  KOO22386.1 1385 GMQLECRFQTEVVYATVLNSSAVRCVTPLAPRL 1417
                  5699*****9988888899*********87655 PP

  == domain 5  score: 2.4 bits;  conditional E-value: 0.053
  TIG_plexin   24 seklkCvFgdleese.atvs..dnkvtCdtPkpeelppi 59  
                  + +++C+Fg  + +  at +  +++++C  P++  + ++
  KOO22386.1 1482 GVDYRCRFGLPNRTVsATYDdvSETLRCVAPAHAAISAL 1520
                  4589****8554433144445799********9988775 PP

  == domain 6  score: -3.7 bits;  conditional E-value: 4.1
  TIG_plexin   42 sdnkvtCdtPkpe 54  
                   +++v+C tP+ e
  KOO22386.1 2038 ARGTVSCVTPSRE 2050
                  4899******875 PP

  == domain 7  score: -0.9 bits;  conditional E-value: 0.57
  TIG_plexin   37 seatvs..dnkvtCdtPkpeelppipegk..dhvtvkLsirsketgkdlastnFtFY 89  
                  s+at++  ++  +C +P+  e+     +   +++ ++L i ++ ++ dla   F+++
  KOO22386.1 2135 SPATFDvaRGLARCVSPALPEVEHGGYTGypNAYIASLRITKNGQNYDLAGLPFSYF 2191
                  666655548888999999977766555447899999**************9999998 PP

  == domain 8  score: 6.3 bits;  conditional E-value: 0.0032
  TIG_plexin    8 sttseltltvenlpalseklkCvFgdlee..seatvsdnkvtCdtPkpee..lppipegkdhvtvkLsirsketgkdlas 83  
                  + ++++tl       +++++ C+Fg + +  + + v  +++ C +P+ ++  +p++ + +++  v+L ++ +  g++++s
  KOO22386.1 2207 EGHTTVTLFGGFSGGFTQDYVCRFGAVLVpaTHQSVPTERLLCISPPLDNatVPELANVTHARPVPLHVSLN--GQQFHS 2284
                  5566666666666677899*****9776533556788*********98752267777777888888888777..677766 PP

  == domain 9  score: 4.6 bits;  conditional E-value: 0.01
  TIG_plexin   25 eklkCvFgdleeseatvs.dnkvtCdtPkpe 54  
                  ++++C+Fg l + e t    ++++Cd+P++ 
  KOO22386.1 2354 HQFYCRFGPLGKVEGTYAaASTLRCDSPPFG 2384
                  699******9999999666*********985 PP

  == domain 10  score: 1.8 bits;  conditional E-value: 0.078
  TIG_plexin   47 tCdtPkpeelppipegkdhvtvkLsirsketgkdlastnFtFY 89  
                   C  P+++ lp+  + ++ v++++s++ ++ +++   +nFt+Y
  KOO22386.1 3128 LCVAPAAQTLPVPANATSLVVLEISLNAQDYTRN--GANFTYY 3168
                  7**********95555577777888888865555..8999998 PP

  == domain 11  score: 2.9 bits;  conditional E-value: 0.036
  TIG_plexin   24 seklkCvFgdlee...............seatvsdnkvtCdtPkpeelp 57  
                  +++++C Fg+ +                +++t+s + + C+tP++   p
  KOO22386.1 3199 GSDYRCAFGTRSLqrspvgnsttapvfaEAETLSATMLVCTTPPHLAPP 3247
                  679*****64433456667777789996777899*********996555 PP

  == domain 12  score: -2.9 bits;  conditional E-value: 2.3
  TIG_plexin   25 eklkCvF......gdlee.........................seatvsdnkvtCdtPkp 53  
                  ++++C+F          e                           + v+ + ++C +P+ 
  KOO22386.1 3303 SDYRCRFipnaqsS---EywresagvlggaeywnelgavnatvVGEAVNASALRCVSPPQ 3359
                  46677775443220...1333444444444444444444333355667788889998876 PP

  == domain 13  score: -0.8 bits;  conditional E-value: 0.52
  TIG_plexin   43 dnkvtCdtPkpeelppipegkdhvtvkLs 71  
                   + v+C tP++    p +++++ ++++L+
  KOO22386.1 3460 VDAVRCITPDAA--QPNMTNQTLTSTNLT 3486
                  678*******94..455677777666665 PP

  == domain 14  score: 10.7 bits;  conditional E-value: 0.00013
  TIG_plexin   17 venlpalseklkCvFgdlee...seat.vsdnkvtCdtPkpeelppip 60  
                  v+ +p   e+l+C+Fg+ ++   ++ t v++++v+C++P+ ++l ++ 
  KOO22386.1 3660 VSAFPGAREDLRCRFGNETVfvlAPTTwVQESGVRCTSPPLSQLEVMG 3707
                  566788899*******99999985555488************998765 PP

  == domain 15  score: 3.6 bits;  conditional E-value: 0.022
  TIG_plexin   43 dnkvtCdtPkpeelppipegk..dhvtvkLsirsketgk 79  
                   + v+C +P+++ + +  ++   d vt++Ls++ +e ++
  KOO22386.1 4060 AGVVRCVSPNVSAFVEPNRTAtgDVVTLELSVNGQEYTQ 4098
                  689*********986644444459999999998876554 PP

  == domain 16  score: 6.2 bits;  conditional E-value: 0.0035
  TIG_plexin   12 eltltvenlpalseklkCvFgdlee.....seatvsdnkvtCdtPkpeelpp 58  
                  ++ ++ +nl + +++++C+F++ +      + +t+ +++v+C  P++ + p 
  KOO22386.1 4346 RIAVSGANLTS-GSNYTCRFNEFSRealpgTLETSLGSSVRCIAPPVVLQPC 4396
                  56666666654.569*****8877667666667777**********987775 PP

  == domain 17  score: 3.0 bits;  conditional E-value: 0.033
  TIG_plexin    2 PsnisvsttseltltvenlpalseklkCvF........gdlee.............seatvs..dnkvtCdtPkpeelppipegkdhvtvkL 70  
                  Ps+ +   ++ +++   + p+ +++++C+F        +                   at++  ++ v+C tP    + +  + + +v+v L
  KOO22386.1 4446 PSSGPSAGATVVDIGGVRPPTGGSDYRCRFvsaalanaT---AlnttatrglpsvtVHATFDetRGVVRCVTPGL--IATNATASAAVLVAL 4532
                  666666677777777777788899******666554441...15556677887776556666679999****998..555556666666666 PP

  == domain 18  score: -2.0 bits;  conditional E-value: 1.2
  TIG_plexin    2 PsnisvsttseltltvenlpalseklkCvFgdleeseatvs 42  
                  Ps  +++ +++lt++ ++l   s + +C+F d  +s++ +s
  KOO22386.1 4569 PSCGPIEGATNLTVSGTQLGGGS-DNRCRFADRPSSPSSSS 4608
                  89999999********9998755.779***99887776655 PP

  == domain 19  score: 0.6 bits;  conditional E-value: 0.2
  TIG_plexin    2 Psnisvsttseltlt....venlpalse.klkCvFgdlee.....seatvs...dnkvtCdtPk 52  
                  P++ +v+ +++l+++    v+ l + ++ +++C+F + ++     ++a++    +++v+C++P 
  KOO22386.1 4683 PASGPVNGATMLRIEgvgaVRGLASSNGcDVRCRFASGSSvapldTPAVLPdlaSGSVQCESPR 4746
                  6666666666666653222555666655589****98877788887777555779*******96 PP

  == domain 20  score: -1.4 bits;  conditional E-value: 0.78
  TIG_plexin   11 seltltvenlpalseklkCvFgdl 34  
                  +++ l  +nl a++ +l+C+F +l
  KOO22386.1 4791 TTVLLHASNLSAVGTDLRCRFSTL 4814
                  5788999**************765 PP

  == domain 21  score: 1.5 bits;  conditional E-value: 0.098
  TIG_plexin   27 lkCvFgdleeseatvsdnkvtCdtPkpe 54  
                  l+C  g +++    ++++ v+C+tP+++
  KOO22386.1 4905 LRCQIGATTVIGTLLNQSAVRCTTPPAQ 4932
                  6899999999999999*********986 PP

  == domain 22  score: -3.4 bits;  conditional E-value: 3.4
  TIG_plexin   20 lpalseklkCvFgdleeseatv 41  
                  l +l+++ +C+Fg+ ++ +a  
  KOO22386.1 5308 LIPLTARAECRFGSEKVVPASW 5329
                  5567888999999988755543 PP

  == domain 23  score: 2.8 bits;  conditional E-value: 0.039
  TIG_plexin   12 eltltvenlpal..seklkCvFgdleeseatvs..dnkvtCdtPkpe 54  
                   +tlt +  pa   +    C+Fg + +++ tv+  ++ ++C++P++ 
  KOO22386.1 5412 IVTLTGTLAPAHvsARPALCRFGRHAVAA-TVDtaQGALRCTSPSAA 5457
                  5666666667665333558****996544.44445*********975 PP

  == domain 24  score: 3.2 bits;  conditional E-value: 0.029
  TIG_plexin    2 PsnisvsttseltltvenlpalseklkCvFgdleeseatvs....dnkvtCdtPk 52  
                  P+  +v  +++lt+  ++l   ++ ++C+ g+++ ++at +    ++ ++C+tP 
  KOO22386.1 5999 PACGPVGGETRLTVVGDQLR-GGSAYRCRLGNSSATNATYEstlqGDLIHCATPR 6052
                  66666777777777777764.4679******99997777544455999******7 PP

  == domain 25  score: 0.5 bits;  conditional E-value: 0.21
  TIG_plexin   26 klkCvFgdleeseatvs....dnkvtCdtP 51  
                  +++C+Fg +  ++at s    d++++C+ P
  KOO22386.1 6157 DYRCRFGGSGAATATGSfrerDGGIRCQAP 6186
                  79****98878777755567999*****99 PP

>> fn3  Fibronectin type III domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   0.0   1.5e-06    0.0044      12      79 ..     177     271 ..     169     276 .. 0.86

  Alignments for each domain:
  == domain 1  score: 17.3 bits;  conditional E-value: 1.5e-06
                 SSSEEEEEEE-CS.SSSSTEEEEEEEEEETTSTS...................TEEEEE.......ECSTSSEEEEESSSTTEEEEEEEEEEETS CS
         fn3  12 tstsltvsWeppk.dgggpitgYeveyrekgsee...................ewneft.......vprtttsvtltgLkpgteYevrVqavngg 79 
                 + t +t+sW+pp  dgg  ++gY++e r  ++ +                    w++ +       vp+ + + +l  L +g  YevrV+a++ g
  KOO22386.1 177 NCTHVTLSWDPPYfDGGTALSGYRLETRRADGSDppptavdepgvlvsaadgtLWRRDStllsplaVPGGAVTGVLGPLLAGVAYEVRVRAFSVG 271
                 56899*************************9999********9999999998833333355566669999999******************9987 PP

>> PAN_1  PAN domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   4.4   1.5e-05     0.044      23      60 ..     434     469 ..     429     484 .. 0.81

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 1.5e-05
                 SHHHHHHHHHHSTTS--SEEEEETTTTEEEEEESSSSS CS
       PAN_1  23 saeeCaerCseekkfrCrsftfnnstkeCylksedkts 60 
                 s+  C+e C+ +++  Cr+f+++   ++C l s+ +  
  KOO22386.1 434 SRLACQESCVANPS--CRFFSYAGVLGRCDLCSSCTDE 469
                 6778**********..**************99887665 PP

>> WT1  Wilm's tumour protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.4   0.0   0.00078       2.3      70     126 ..    2200    2257 ..    2166    2267 .. 0.76
   2 ?    1.2   0.4     0.059   1.8e+02      69     202 ..    3395    3530 ..    3337    3534 .. 0.83
   3 ?   -3.6   0.0       1.7     5e+03      41     106 ..    4087    4152 ..    4066    4161 .. 0.72

  Alignments for each domain:
  == domain 1  score: 7.4 bits;  conditional E-value: 0.00078
         WT1   70 dphedphcGlsaftvh..fsgqftgtgacrvGafgepaasqaassqprmfsnepyltnc 126 
                  dp   p  G+++ t++  fsg ft    cr+Ga   pa+ q+ +++ r++  +p l+n 
  KOO22386.1 2200 DPPGGPLEGHTTVTLFggFSGGFTQDYVCRFGAVLVPATHQSVPTE-RLLCISPPLDNA 2257
                  555556667777776555*******************988888877.888888877775 PP

  == domain 2  score: 1.2 bits;  conditional E-value: 0.059
         WT1   69 adphedphcGlsaftvhfsgqftgt.gacrvGafgepaasqaassqprmfsnepyltncvdsqpaarnqGysavaldgapsyghtpshhtaqlsnhs 164 
                    p   ph G + + vh  g   g+   cr+     pa+ ++a   +r++ n+++    + +++a+       ++ d+a      ++ ++++l++ s
  KOO22386.1 3395 VSPSSGPHHGGTRLVVHGHGLRLGAhYCCRLDGIVLPASLETAGRGTRLLWNGTHGVPAISNASAV--DAVRCITPDAAQPNMTNQTLTSTNLTSSS 3489
                  468888999999999**999888887999***9999*9999999999*****99988887766665..457788899988888899999******** PP

         WT1  165 fkhedalsqqsslgeqqysvppp..vyG.chtPsdsctgsq 202 
                   +   +ls + +   qqys+p     +    +P++s  +s 
  KOO22386.1 3490 VRLGVPLSVSIATNCQQYSAPHAgvTFTyFGSPPESIGSST 3530
                  ********************975222321346777777765 PP

  == domain 3  score: -3.6 bits;  conditional E-value: 1.7
         WT1   41 LdfhpaaspyssLaskhsfikqePsWgaadphedphcGlsaftvhfsgqft..gt.gacrvG.afgepaa 106 
                  L++  + + y+    +hsf +  P  +a  p+  p +  +af + +sg     g+   cr+  +f+ +++
  KOO22386.1 4087 LELSVNGQEYTQ--QSHSFSRYAPILTAVYPMSGPLA--GAFRIELSGANLadGSeYRCRFElPFNVSTP 4152
                  555555555554..459*********999***99998..6999999998651144578999888887665 PP

>> PAN_4  PAN domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.4   3.3    0.0014       4.2      17      38 ..     434     455 ..     427     466 .. 0.87

  Alignments for each domain:
  == domain 1  score: 7.4 bits;  conditional E-value: 0.0014
       PAN_4  17 speaCcaaCaadsnCnawvyvk 38 
                 s  aC++ C a+++C+ ++y  
  KOO22386.1 434 SRLACQESCVANPSCRFFSYAG 455
                 6789****************75 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (6215 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       274  (0.0152825); expected 358.6 (0.02)
Passed bias filter:                      209  (0.0116571); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 1.80u 0.31s 00:00:02.11 Elapsed: 00:00:00.53
# Mc/sec: 35428.57
//
Query:       KOO22387.1  [L=85]
Description: translation initiation factor [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.1e-09   37.4   0.0    2.4e-09   37.2   0.0    1.0  1  IF4E      Eukaryotic initiation factor 4E


Domain annotation for each model (and alignments):
>> IF4E  Eukaryotic initiation factor 4E
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.2   0.0   1.3e-13   2.4e-09      86     154 ..       5      75 ..       1      80 [. 0.82

  Alignments for each domain:
  == domain 1  score: 37.2 bits;  conditional E-value: 1.3e-13
                 --HHHHHHHHHHHHHTT-SS--.-SEEEEEE...EE-.SSEEEEEEEES-TT-HHHHHHHHHHHHHT------ CS
        IF4E  86 ekldrlWeelllaligeqleeeedeicGvvv...svR.kkedrisiWtrdasdeekvekigeklkevlelpee 154
                 ++ld+lW++l l +ige++++  d+icG+ v   sv  ++  r+++W++ + d ++ ++++++++e l+   e
  KOO22387.1   5 QQLDELWRDLALGMIGETIDPL-DDICGARVvdkSVGtRQLFRLELWFKRK-DLSVADELKKRMNEHLGPAAE 75 
                 579*******************.*******955544312345*********.889***********9985544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (85 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       260  (0.0145016); expected 358.6 (0.02)
Passed bias filter:                      219  (0.0122148); expected 358.6 (0.02)
Passed Vit filter:                        10  (0.000557756); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.32u 0.22s 00:00:00.54 Elapsed: 00:00:00.35
# Mc/sec: 721.58
//
Query:       KOO22388.1  [L=548]
Description: folate biopterin transporter [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.1e-92  309.5   7.8    3.7e-90  302.7   7.8    2.4  1  BT1       BT1 family
    6.1e-11   41.9  33.4    9.5e-11   41.2  33.4    1.4  1  MFS_1     Major Facilitator Superfamily
  ------ inclusion threshold ------
      0.027   14.6   0.4      0.027   14.6   0.4    3.6  5  ThrE_2    Threonine/Serine exporter, ThrE
      0.044   13.2   0.0      0.077   12.5   0.0    1.3  1  Transgly  Transglycosylase
       0.19   10.4   0.7       0.31    9.7   0.7    1.2  1  EMP70     Endomembrane protein 70


Domain annotation for each model (and alignments):
>> BT1  BT1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  302.7   7.8     1e-93   3.7e-90       1     509 [.      88     525 ..      88     533 .. 0.90

  Alignments for each domain:
  == domain 1  score: 302.7 bits;  conditional E-value: 1e-93
         BT1   1 kGvadgllrlavqfmltdrlgidparyqrlsglatlgwvikpltallsDgfallGytkrwYlvvscllgaafallygllpakeasakvaaafillsslg 99 
                 +G+  gl++la+ ++l+++l++ pa+ ++l g+a+l+wvikp++++l+D +++lGy++++Yl++++llgaa +  ++++++++a+   a ++  ++slg
  KOO22388.1  88 QGI-LGLASLARTYFLKENLHLGPAESSALLGIASLPWVIKPVYGFLTDALPILGYRRKPYLIMAGLLGAAGWASLATWVHTPAQ---AILASTVASLG 182
                 899.9********************************************************************************...66666789*** PP

         BT1 100 kaivdvlsdalvselarq.spkagpsLvSwiwlvsavGgiiasvlsGpLldagktrisvlvsaalqlltvvvflfnwygerknrveraeDallikeelr 197
                 +a++dv++d+lv+e+ar    + +++L+S++w +s++Gg+ +++lsG Ll+++ ++ ++ ++a+++ll   +  +n+ +e+          ++ ++ +r
  KOO22388.1 183 VAMSDVVVDSLVVERARDdASASSGALQSLCWSCSSFGGLASAYLSGSLLETMTPQQVFGITAVFPLLVSAI-SLNLAEEK----------VVSSQ-TR 269
                 ******************888999**********************************************99.66776665..........33333.44 PP

         BT1 198 kereslglpakeepdgsrdnadDeeeva..gkrivpclfgllemnrevisrnwkilvysevltpaviamllaailadtlgllivcvvvstivCatsfwa 294
                  e ++ ++   + +      + D+ ++   +   +  l ++  ++ ++ + +w ++ ++ v+ pa++++l++ +                         
  KOO22388.1 270 GEDSADAMAGGATT------TGDGATARngVIARDGALGSFGAQVGDQAALLWGAVSQRRVWLPALFMLLWQGT------------------------- 337
                 44433332222222......2222222222333344555556678999**************************......................... PP

         BT1 295 lplviakanvFlyltkalylqlpgaldafylakaeClpdgPnfsyeflgtvkgvigsiagligvtlfnrllkklsyrlvfivttvlqvlaglfdlilvk 393
                  p+  + +++F++lt +l                     g  f +eflg+v  v +sia+l+g++l++ +l++++++ +f   +++ +++gl++l+lv+
  KOO22388.1 338 -PS--SGGAFFYFLTDEL---------------------G--FGPEFLGRVS-VGTSIASLLGIWLYRTYLQEVPIKALFRGLALTGTALGLSQLLLVT 409
                 .**..9************.....................8..**********.********************************************** PP

         BT1 394 rwnlklGisdhavyilgdsvvlevlymlkfmPlvvllsrLcPrGsEsvvfallasianlgqvvssslGallmeygwpv...lgvtecdfsnlallllve 489
                 + n+ lGi+d  ++ +gd vvl+vl +l+fmPl+vl+++LcP+G+E+++fall+s  n + +++ +lGa+l+ + + v    + +  df nl ll+ ++
  KOO22388.1 410 HYNRVLGIPDA-LFTFGDDVVLTVLGQLAFMPLLVLAASLCPPGVEGTLFALLMSGFNAAGILGTELGAMLTAW-LGVsasEEGGGIDFTNLGLLITIC 506
                 **********9.**************************************************************.888776677889************ PP

         BT1 490 slvaPllplpLllllpkari 509
                 +l++ llpl  l +l +a++
  KOO22388.1 507 NLSS-LLPLLALDWLDEAPV 525
                 ****.999988888877766 PP

>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.2  33.4   2.6e-14   9.5e-11      15     352 ..      94     472 ..      77     526 .. 0.76

  Alignments for each domain:
  == domain 1  score: 41.2 bits;  conditional E-value: 2.6e-14
       MFS_1  15 lgpalplalaedlgispseigllltlyalgaavaslplGrlsdrf...G.rrrvlllglllfalglllll..fasslw.lllvlrvlqGlgagalfpag 106
                 +++a + +l+e+l++ p+e + ll++ +l  +v  +++G+l+d +   G rr+ +l+++ l+++++++ l  +  + +   +++  +++lg +++  ++
  KOO22388.1  94 ASLARTYFLKENLHLGPAESSALLGIASL-PWVIKPVYGFLTDALpilGyRRKPYLIMAGLLGAAGWASLatW-VHTPaQAILASTVASLGVAMSDVVV 190
                 333334589*****************999.9************664447555566666666666644444347.455669******************* PP

       MFS_1 107 aaliadwfpkeergraigllsa...gfslGailgpllggllasslgWravfyilaivsllafvlfllllpeepperkrkspkeee.............. 188
                  +l+++ + ++  ++  +l s+   ++s+G +  + l+g l++    + vf i a++ ll+  +   l ++e++  + ++  e++              
  KOO22388.1 191 DSLVVERARDDASASSGALQSLcwsCSSFGGLASAYLSGSLLETMTPQQVFGITAVFPLLVSAI--SLNLAEEKVVSSQTRGEDSadamaggatttgdg 287
                 **********766666666666555677777888888888888888***************775..555555555555555555569***********9 PP

       MFS_1 189 ..................kgtgpaplvpawkallkdpvlwillialllfffgfsg...lltllplylqevlgls....glllaglllallalvgailal 262
                                   +++g ++++  w+a+  ++    +++ +l++   ++g       ++ +l + lg++    g +++g   ++++l+g+ l  
  KOO22388.1 288 atarngviardgalgsfgAQVGDQAALL-WGAVSQRR----VWLPALFML-LWQGtpsSGGAFFYFLTDELGFGpeflGRVSVG--TSIASLLGIWL-- 376
                 9999999999999888877777777777.********....555555553.66665554444444579******7777667777..77777777544.. PP

       MFS_1 263 lagrlsdrlgrrrrlllallllllaalglallavtssavllll.vlvl......iGfglgfvfpsllalasdlappeeagtasglfntagslggalg 352
                   ++l     +  ++ lal +++l++  l+l+ ++ + vl++  +l++      +++ + ++f +ll+la++l+pp   gt+++l ++ ++++g+lg
  KOO22388.1 377 YRTYLQEVPIKALFRGLALTGTALGLSQLLLVTHY-NRVLGIPdALFTfgddvvLTVLGQLAFMPLLVLAASLCPPGVEGTLFALLMSGFNAAGILG 472
                 55555544333344444444455555555555555.56666658666678888888888888*********************************99 PP

>> ThrE_2  Threonine/Serine exporter, ThrE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.8   0.7       3.7   1.3e+04      60      86 ..       8      34 ..       3      36 .. 0.75
   2 ?   -2.2   0.4       1.2   4.4e+03      26      60 ..      54      90 ..      47     103 .. 0.45
   3 ?   14.6   0.4   7.4e-06     0.027      21      60 ..     146     185 ..     137     191 .. 0.91
   4 ?   -0.9   0.1      0.49   1.7e+03      69      84 ..     234     249 ..     210     259 .. 0.75
   5 ?   -1.9   0.5      0.96   3.5e+03      30      64 ..     452     486 ..     442     489 .. 0.83

  Alignments for each domain:
  == domain 1  score: -3.8 bits;  conditional E-value: 3.7
      ThrE_2 60 llsellArriktPvtvflipgllplvP 86
                 l+   A  + +P+   + p+l  lvP
  KOO22388.1  8 CLALASAVQTAVPAPRCAAPALRRLVP 34
                566677778888888888999888888 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 1.2
      ThrE_2 26 agllGavgwlvylllme..lgvsialasflaalaigl 60
                +g +G+vg  v   +m+   g +   + ++  ++ g+
  KOO22388.1 54 SGSVGGVGAWVQQNVMQgvAGGPATYTVMTVYFVQGI 90
                4444444433333333323333333333333333344 PP

  == domain 3  score: 14.6 bits;  conditional E-value: 7.4e-06
      ThrE_2  21 rallvagllGavgwlvylllmelgvsialasflaalaigl 60 
                  +l++agllGa+gw++    ++  ++ +las +a+l +++
  KOO22388.1 146 PYLIMAGLLGAAGWASLATWVHTPAQAILASTVASLGVAM 185
                 5799********************************9998 PP

  == domain 4  score: -0.9 bits;  conditional E-value: 0.49
      ThrE_2  69 iktPvtvflipgllpl 84 
                 ++tP +vf i +++pl
  KOO22388.1 234 TMTPQQVFGITAVFPL 249
                 4689999999999998 PP

  == domain 5  score: -1.9 bits;  conditional E-value: 0.96
      ThrE_2  30 Gavgwlvylllmelgvsialasflaalaigllsel 64 
                 G+ g l+ ll++ +++  +l++ l+a++ + l+  
  KOO22388.1 452 GVEGTLFALLMSGFNAAGILGTELGAMLTAWLGVS 486
                 56688888999999999999999999999988765 PP

>> Transgly  Transglycosylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   2.1e-05     0.077     114     159 ..      83     128 ..      78     137 .. 0.91

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 2.1e-05
    Transgly 114 svylgrevyGieaAarayFgkdakdLtlaeaalLagllkaPsrynp 159
                 +vy+ +++ G+++ ar+yF k+  +L  ae+  L g+   P  ++p
  KOO22388.1  83 TVYFVQGILGLASLARTYFLKENLHLGPAESSALLGIASLPWVIKP 128
                 79***********************************999987766 PP

>> EMP70  Endomembrane protein 70
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   0.7   8.6e-05      0.31     245     347 ..     157     254 ..     145     267 .. 0.85

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 8.6e-05
       EMP70 245 sgWKlvhgdVfrpPknsllLsvlvGsGvqlllmalvtlllallgflspsnrgslltvalllyvllgliaGYvsarlyktfggekwkkntlltalllpgl 343
                  gW ++ + V ++P+++ l s++ + Gv +  +++ +l++        +++g+l +++  + ++ gl++ Y+s++l +t+      ++++  + ++p+l
  KOO22388.1 157 AGWASLATWV-HTPAQAILASTVASLGVAMSDVVVDSLVVERARDDASASSGALQSLCWSCSSFGGLASAYLSGSLLETMTP----QQVFGITAVFPLL 250
                 6888888877.578888999*********************999999********************************984....4555555556665 PP

       EMP70 344 lflv 347
                 + ++
  KOO22388.1 251 VSAI 254
                 5554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (548 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       342  (0.0190752); expected 358.6 (0.02)
Passed bias filter:                      173  (0.00964917); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.55u 0.28s 00:00:00.83 Elapsed: 00:00:00.46
# Mc/sec: 3586.59
//
Query:       KOO22389.1  [L=284]
Description: valacyclovir hydrolase-like protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.9e-15   57.2   0.1    3.3e-10   40.1   0.0    2.1  2  Abhydrolase_1  alpha/beta hydrolase fold
    5.7e-14   52.0   0.1    4.9e-12   45.6   0.1    2.1  1  Hydrolase_4    Serine aminopeptidase, S33
    2.4e-09   38.1   1.0    5.4e-09   37.0   1.0    1.5  1  Abhydrolase_6  Alpha/beta hydrolase family
    0.00041   19.9   0.2      0.006   16.1   0.2    2.0  1  Peptidase_S9   Prolyl oligopeptidase family
  ------ inclusion threshold ------
      0.021   15.0   0.0      0.031   14.4   0.0    1.3  1  Abhydrolase_4  TAP-like protein
       0.04   14.0   0.2      0.057   13.5   0.2    1.4  1  Thioesterase   Thioesterase domain
      0.089   11.4   0.0       0.11   11.1   0.0    1.2  1  PhoPQ_related  PhoPQ-activated pathogenicity-related protein
       0.15   11.6   0.2       0.23   11.1   0.2    1.2  1  Esterase       Putative esterase
       0.18   11.6   0.1        0.8    9.5   0.0    1.9  3  Abhydrolase_2  Phospholipase/Carboxylesterase


Domain annotation for each model (and alignments):
>> Abhydrolase_1  alpha/beta hydrolase fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.1   0.0   1.6e-13   3.3e-10       2     115 ..      51     165 ..      50     184 .. 0.80
   2 !   15.5   0.0     5e-06      0.01     189     254 ..     202     268 ..     171     270 .. 0.83

  Alignments for each domain:
  == domain 1  score: 40.1 bits;  conditional E-value: 1.6e-13
                    EEEEE-STTTCGGG.GTTGHHHHHHHHTTSEEEEEEETTSTTSSSTTTGB.CHHSHHHHHHHHH...HHHHHCTTSSEEEEEETHHHHHHHHHHHH CS
  Abhydrolase_1   2 vlvilhGlpgssdv.waerglapaLakdgfdvillDlrGvgySspapacinddygtasvaddld...rildalgddkltlvGhSmGGmialayaae 93 
                    +l++ +G  g+++  +a      +L++   +vi +D+rG+g+S+p+ +    +++++ ++ d d   +++ alg ++ +l+G+S G   a + aa 
     KOO22389.1  51 PLLCMPGAMGTAETdFAP--QLTGLSD-TTQVISFDPRGYGRSRPPAR----EFPIDFYQQDADdaaALMKALGHERYALMGWSDGAISAVMHAAS 139
                    678888888876663444..4447777.99*****************7....68999998888876466*************************** PP

                    HGGGEEEEEEESE....CSSCCHHHH CS
  Abhydrolase_1  94 yperVkalvllga....idpaaslie 115
                    +p  V++l+  g+        ++  e
     KOO22389.1 140 NPATVAKLIIFGGnaylTKKDIDAFE 165
                    *********99996655444444444 PP

  == domain 2  score: 15.5 bits;  conditional E-value: 5e-06
                    HHHHHHCCHHHHHHHHHCTHHHHSEEEEEEETTCSSSCHHHHHHHHHCHTS...EEEEEEETCSSSHHH CS
  Abhydrolase_1 189 ieqwpttdsaklllrlrelknvlaptlvisgtsDplvppkaledlaqllpk...krlvvisdagHlafl 254
                    +  ++++  + ++ r+ +   +++pt+v++g++Dp+  p++ e +++ +p+    +l+v++ + H++++
     KOO22389.1 202 WAAIYEHSQGDVCMRQAK--SITCPTMVLHGAKDPICLPEHAEWFKANIPGdgaTSLHVLPEGKHNLHI 268
                    444555555555656555..9******************9999999999999*9999****99999876 PP

>> Hydrolase_4  Serine aminopeptidase, S33
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.6   0.1   2.5e-15   4.9e-12      33     235 ..      78     267 ..      65     269 .. 0.78

  Alignments for each domain:
  == domain 1  score: 45.6 bits;  conditional E-value: 2.5e-15
  Hydrolase_4  33 avyalDhrGhGrsegkrghvpsfddyvdDlaafvekvkeehpelplfllGhSmGGliallyllrypdkvaglilsaPalkikaklkappllklllkll 130
                  +v+ +D rG+Grs    ++  ++d y +D++ +   +k+   +++  l+G S G++ a+ +++ +p+ va+li+++ +  + +k              
   KOO22389.1  78 QVISFDPRGYGRSR-PPAREFPIDFYQQDADDAAALMKALG-HERYALMGWSDGAISAVMHAASNPATVAKLIIFGGNAYLTKK----D--------- 160
                  7999*********6.44555678888888888876666444.5558******************************99877643....2......... PP

  Hydrolase_4 131 gkllpklqvsnnlkadslsrdpevva.ayeadplv.hgkitvrlllelld..amkrleeraakitlPllllhGeaDkvvdpeasrelyerlgsk.dkt 223
                     +  ++ ++n++a++  r++e     y a+ l   ++   + ++ +++   ++ + ++a++it P+++lhG++D+++ pe ++ + ++++ +   +
   KOO22389.1 161 ---IDAFEATRNVEATWSRRQKETHYpIYGAEGLQkMWGSACDAWAAIYEhsQGDVCMRQAKSITCPTMVLHGAKDPICLPEHAEWFKANIPGDgATS 255
                  ...22233344445555555555444366666666556666666666665115789************************************998999 PP

  Hydrolase_4 224 lklypglyHell 235
                  l++ p++ H l+
   KOO22389.1 256 LHVLPEGKHNLH 267
                  *********997 PP

>> Abhydrolase_6  Alpha/beta hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.0   1.0   2.7e-12   5.4e-09       1     217 [.      52     274 ..      52     277 .. 0.58

  Alignments for each domain:
  == domain 1  score: 37.0 bits;  conditional E-value: 2.7e-12
                    EEEE--GC.....GCHHHHHHHHCCTCEEEEE--TTSTS-GGCS--HHH......CHHHHHHHCCTT..TTSEEEEEETCHHHHHHHHHHCC.... CS
  Abhydrolase_6   1 vlllHGagssassWlvapLaallaagvhvlapDlpGhGrsdpppldled......ladlaalldelaagggpvvlvGHSlGGalalaaapla.... 86 
                    +l+++Ga ++a+  ++++L  l+    +v+++D +G+Grs pp+ +++       ++d aal  +l  g+ +  l+G+S G++ a +   +a    
     KOO22389.1  52 LLCMPGAMGTAETDFAPQLTGLSDTT-QVISFDPRGYGRSRPPAREFPIdfyqqdADDAAALMKAL--GHERYALMGWSDGAISAVM---HAasnp 141
                    68899966665555567887777777.77*********9988887773333222245557777777..46666**********7777...443334 PP

                    ...EE.EEES-..----TTTS----TTHHHHHHTT-CCCCHCCH..S-HS..CCCCHHHCCCCHCHCCCGHHHHCCHHCHTT.....CCHHTT-TT CS
  Abhydrolase_6  87 .lvvg.vlldppptalpagllaaalelllallallrllawlsre..plpr..lfladedadaawrarlarlaallaglgllp.....aaawadlpv 171
                      v++ ++  +   a+ +    +a+e  + + a     +w++r      +   + a     +  + ++  +++ +a+ ++++      +  + +++
     KOO22389.1 142 aTVAKlIIFGG--NAYLTKKDIDAFEATRNVEA-----TWSRRQkeT--HypIYGA-----EGLQKMWGSACDAWAAIYEHSqgdvcMRQAKSITC 223
                    34444444444..22222224444444444444.....555433221..1213333.....44444444444444433322222222668999999 PP

                    GCEEE.CTT-C....HHHHCHHCCCH.STTEEETCE...SSS-HHHHSH.HHH CS
  Abhydrolase_6 172 pllvl.ggeDp....lvprllerlla.qagarlpvvlpgaGHlphleep.dev 217
                    p++vl g++Dp     +++++++         l +vlp + H +h+ +  dev
     KOO22389.1 224 PTMVLhGAKDPiclpEHAEWFKANIPgDGATSL-HVLPEGKHNLHI-RFaDEV 274
                    999996799997655444555555555555555.***********9.655877 PP

>> Peptidase_S9  Prolyl oligopeptidase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.2     3e-06     0.006      46     186 ..     107     264 ..      77     282 .. 0.73

  Alignments for each domain:
  == domain 1  score: 16.1 bits;  conditional E-value: 3e-06
                   HHHHHHHHHHHHTTS--GGGEEEEEETHHHHHHHHHHHH-GGG-SEEEEESE---CCCHHCSTTSTHHHCCCC--TTTCHHHHHHHHHH-CGGG--. CS
  Peptidase_S9  46 dDfiaaaealakegyvdserlaitGgSyGGyltgaalnqrpdlFkaavaevpvvdvlrydsdtdllteeymewgnpeeneegykelspyspldnvk. 141
                   dD  a ++al       +er a++G+S G   + + ++++p + + +++  + + +++ d d    t++++ +   +++e++y  +  ++ l+++  
    KOO22389.1 107 DDAAALMKAL------GHERYALMGWSDGAISAVMHAASNPATVAKLIIFGGNAYLTKKDIDAFEATRNVEATWSRRQKETHY-PIYGAEGLQKMWg 196
                   4444444444......5677889999999999999999999888888888888888888888522444444444444455555.5555555555547 PP

                   ........................---EEEEEEETT-SSS-THHHHHHHHHHH--S-SEEEEEETTS-S CS
  Peptidase_S9 142 ........................aypplLlihGlaDdrvppaealklvaaLqkkgknvlllifpdegH 186
                                           +++p++++hG +D  + p++a+ + a+    +  + l++ p+ +H
    KOO22389.1 197 sacdawaaiyehsqgdvcmrqaksITCPTMVLHGAKDPICLPEHAEWFKAN-IPGDGATSLHVLPEGKH 264
                   778888888889999999999999****************99998755554.44455588899999988 PP

>> Abhydrolase_4  TAP-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.4   0.0   1.6e-05     0.031      11      92 ..     196     283 ..     183     284 .] 0.77

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 1.6e-05
  Abhydrolase_4  11 sllsCagwpv...spqrprdestakg.aapvLllqnerDpaTPyegakklakalgg..avlvtvegeGHgala.agntCvdkavdaYLl 92 
                    +   C++w +    +q  +   +ak+ + p+++l +  Dp++ +e a+ ++ +++g  a+ + v  eG + l  +  + v+ +v+++L+
     KOO22389.1 196 GS-ACDAWAAiyeHSQGDVCMRQAKSiTCPTMVLHGAKDPICLPEHAEWFKANIPGdgATSLHVLPEGKHNLHiRFADEVNGLVRDFLK 283
                    34.3****66222555555556666667***************************9988999998888777776888889999999886 PP

>> Thioesterase  Thioesterase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.2   2.9e-05     0.057       2     105 ..      51     155 ..      50     269 .. 0.70

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 2.9e-05
                   EEEEE--TTC.CSGGGHHHHHHCTTCEEEEEEECSTTSTSHHHCTTCH.....HHHHHHHHHHHHHH-SSSSEEEEEETHHHHHHHHHHHHHHHCT- CS
  Thioesterase   2 pLflfppagG.sasvfrslasklsdpvvevlavqlpgrerdepplesi.....eelaaeyaealrqiqpegPyalfGhSlGgllAfevArqLesqGl 92 
                   pL ++p+a G + + f+   + lsd+  +v+    +g++r+ pp++++     ++ a+  a+ +++   e  yal+G+S G++ A   A+   s+  
    KOO22389.1  51 PLLCMPGAMGtAETDFAPQLTGLSDT-TQVISFDPRGYGRSRPPAREFpidfyQQDADDAAALMKALGHE-RYALMGWSDGAISAVMHAA---SNPA 142
                   89********88889*9888888887.7777777777775555554432222278899988888888888.9**********99877665...5677 PP

                   SEEEEEEESCCCC CS
  Thioesterase  93 avkslflidssap 105
                   +v+ l+++++ a 
    KOO22389.1 143 TVAKLIIFGGNAY 155
                   7777777777665 PP

>> PhoPQ_related  PhoPQ-activated pathogenicity-related protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   5.6e-05      0.11     258     306 ..     219     272 ..     186     284 .] 0.82

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 5.6e-05
  PhoPQ_related 258 erltipkyiinasgDdffvpdstkfyfekLkg..ekalrivPnssHglsn...k 306
                    +++t p +++ +++D+  +p++++ +  +++g   ++l+++P+ +H+l     +
     KOO22389.1 219 KSITCPTMVLHGAKDPICLPEHAEWFKANIPGdgATSLHVLPEGKHNLHIrfaD 272
                    78899*************************9855799*********98753433 PP

>> Esterase  Putative esterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.2   0.00011      0.23     117     168 ..     121     199 ..     109     221 .. 0.79

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00011
                 EEEEEETHHHHHHHHHHHCSTTTCCEEEEES--S-CC..................................HCHHHCTTCCHHHCC CS
    Esterase 117 ravaGqSmGGlgALilalkhpdrFgsvssfSpivnps..................................namWgqeekeawqen 168
                  a++G S G+ +A++ a+ +p   +  + f + ++++                                  + mWg        + 
  KOO22389.1 121 YALMGWSDGAISAVMHAASNPATVAKLIIFGGNAYLTkkdidafeatrnveatwsrrqkethypiygaeglQKMWGS-------AC 199
                 69*****************************9988888888888888888777777777777777777777777776.......33 PP

>> Abhydrolase_2  Phospholipase/Carboxylesterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   0.0    0.0004       0.8      99     145 ..     113     159 ..     105     220 .. 0.85
   2 ?   -0.1   0.0      0.34   6.7e+02      28      67 ..     208     244 ..     202     249 .. 0.70
   3 ?   -1.4   0.0      0.87   1.7e+03     157     170 ..     223     236 ..     214     267 .. 0.69

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 0.0004
                    HTT--GGGEEEEEETHHHHHHHHHHHT-SS--SEEEEES---TTGGG CS
  Abhydrolase_2  99 kkgipssriiigGFSqGaalalylaltlpkklggivafsgalplsqk 145
                     k +  +r +++G S Ga+ a+  a + p  ++  ++f+g + l +k
     KOO22389.1 113 MKALGHERYALMGWSDGAISAVMHAASNPATVAKLIIFGGNAYLTKK 159
                    566788999*******************************9988776 PP

  == domain 2  score: -0.1 bits;  conditional E-value: 0.34
                    HHHHHHHH.TT--TTEEEEEE---EEE-GGGTT-EEE-SS CS
  Abhydrolase_2  28 hawaeaakteaalpnikfifphgpelpvtlnggmrmpaWf 67 
                    h+++++ + +a++  +   ++hg ++p  l+  +    Wf
     KOO22389.1 208 HSQGDVCMRQAKSITCPTMVLHGAKDPICLPEHA---EWF 244
                    5666666667777777777777777777777776...566 PP

  == domain 3  score: -1.4 bits;  conditional E-value: 0.87
                    -EEEEEEETT-SSS CS
  Abhydrolase_2 157 lpilqiHgeeDpvv 170
                     p + +Hg +Dp+ 
     KOO22389.1 223 CPTMVLHGAKDPIC 236
                    57777888888875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (284 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       288  (0.0160634); expected 358.6 (0.02)
Passed bias filter:                      280  (0.0156172); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.48u 0.27s 00:00:00.75 Elapsed: 00:00:00.41
# Mc/sec: 2063.04
//
Query:       KOO22390.1  [L=78]
Description: hypothetical protein Ctob_003541 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (78 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       203  (0.0113224); expected 358.6 (0.02)
Passed bias filter:                      167  (0.00931452); expected 358.6 (0.02)
Passed Vit filter:                         8  (0.000446204); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.26s 00:00:00.61 Elapsed: 00:00:00.41
# Mc/sec: 569.24
//
Query:       KOO22391.1  [L=549]
Description: gh3 domain-containing protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   2.3e-110  369.9   0.0   8.9e-109  364.7   0.0    2.0  1  GH3       GH3 auxin-responsive promoter


Domain annotation for each model (and alignments):
>> GH3  GH3 auxin-responsive promoter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  364.7   0.0    5e-113  8.9e-109       3     525 ..      19     531 ..      17     533 .. 0.92

  Alignments for each domain:
  == domain 1  score: 364.7 bits;  conditional E-value: 5e-113
                 HHHHHTHHHHHHHHHHHHHHHCTTSHHHHHC...TTHCHHH....HHHHS--BEHHHHHHHHHHHHTTCC.CTSSSS-SEEEEECCEETTEEEEEEESH CS
         GH3   3 ekltknaaevqeevLkeiLkrnanteylkkfefssiksaed....FkkkvPivtYedlepyieriakGeqnvLtsepiklfalsSGTtsgksKliPvte 97 
                 +k + + a vq+ vL + L++na+t+y+  ++fs++ +++d    F+k +Pi+tY d++p+++riakGe+nvL++ep +++a +SGT+ g++ l+P+t+
  KOO22391.1  19 DKECDDFATVQRMVLAKQLEANASTAYGVAHGFSEMLQSDDvcvaFRKSHPITTYGDWAPWVHRIAKGESNVLLKEPETMLAATSGTS-GQRALLPYTQ 116
                 5678999*****************************999999**********************************************.********** PP

                 HHHHHHHHH.HHHHHHHHHHHS....TTSEEEEE------EE-TTSSEEEEHHHHHHTSCCHHHCCT..BSS-HHHHT-S.-HHHHHHHHHHHHHHTCC CS
         GH3  98 eslkelallvlallaallsryv....ekgkalylllakeerktkgglpvgtastsylkseafllkkl..ytsPkevisie.dseqslychllcgLlqre 189
                  + + + ++ + ++++ l+r++    e +k+++l++a++ ++ +ggl++g+ s+++  +   +l  l  y++P   ++i+ d+ ++ly+h+l++  ++ 
  KOO22391.1 117 VMASAFFKYGILVVFDTLRRTLpesfELQKTCKLAFAPSWTYAEGGLRIGPNSSNPNDKAFRRL--LllYSTPSVGYEIShDEGAALYVHALFAA-KDA 212
                 *****9999999999999555555448***********************98887765544444..246********9998999***********.*** PP

                 CEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHCTS--TT-....--HHHHHHHHC.CH.B-CHHHHHHHHHHSS.T.TTHHHHHSTT-SEEEEE-SGGG CS
         GH3 190 evevisavfastllralrlleenweelcedirtgtlseki....tdpelrealskkll.pnpeladelekeckksw.kgilkrlWPnlklvscivtgsm 282
                 ++++++a+f+  + r+l+llee+ e +++di++gt++ +i     dp+  +al++ l  ++  +a++l++  +++  +g+++r+WP+l+l+ + +tg++
  KOO22391.1 213 KLGILEANFVNLPFRLLNLLEEQGESIADDIARGTINCQIaariSDPAKVAALEAALGgEDGGRAAALREALRSGEpTGLARRVWPKLRLILANATGAF 311
                 ************************************98777998999999999997779999**********55545********************** PP

                 GGHHHHH.HHHHTTS-EEE-EEEETTEEEEEESSTTS-CCC--EEE-TTSCEEEEEESSTT.TSSSSEECCCS-TTSEEEEEEESTTS-SSEEECEEEE CS
         GH3 283 eqyipkl.ekyagglplvsegyaasEgifginleplskpeevsytllpnsayfEFipveedeeepetvdleevevGkeYelvvTtfaGLyRYrigDvvr 380
                 e y++kl    a g+p++s++yaasEg++g+ l+p  + +                 v      ++t++++ev ++ +YelvvTt  GL+RYrigDvvr
  KOO22391.1 312 ESYAEKLrAGSAAGVPILSTVYAASEGLMGVALSPSLDGSA----------------VA-----DQTLLAHEVALNTDYELVVTTLGGLCRYRIGDVVR 389
                 *******5567777*******************99999822................32.....469******************************** PP

                 EEEEETTEEEEEEEECCTEEE-SSSS-CCHHHHHHHHH.HHHHHTT-EEEEEEEEE.ESS.SSSEEEEEEEEECS......SHHHHHHHHHCS.-SHH. CS
         GH3 381 vtgfynkaPrleFvgRknvvlsidgeklteeelqkaveeaakeltglelvdftsfapdtsesepghyvlflElkkkeepe.eeecckeldesL.ednve 477
                 v+g + +aP +eF +R++++l+++gek++e +l +a+ ++++   g +l+++t +   +  +  ++y +f+E ++  +p+      ++ld++L + n  
  KOO22391.1 390 VVGRHGTAPLVEFRYRRGQLLNLRGEKTSEPQLAAALSATFD---GRTLMEYTTVE-AIPSRGLPFYRIFIERAA-GAPAlAAGAPATLDAALgRANPI 483
                 **************************************7775...589******55.56559**********986.566656999************** PP

                 HHHHHCCTSCEEEEEEEE-TTHHHHHHHHHHCTTSSSSC----SCE-T CS
         GH3 478 YeakrkdgslgplevrvvkkgtFeklmeeavskgasagQyKvprlvns 525
                 Y+  r++g++gp +v+ v++g+Fe+l+e  +s+g+s +Q+Kv r+++s
  KOO22391.1 484 YATWRAKGAIGPCQVFEVAPGSFEALRECRLSEGSSPQQLKVSRVLRS 531
                 *********************************************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (549 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       245  (0.013665); expected 358.6 (0.02)
Passed bias filter:                      219  (0.0122148); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.51u 0.28s 00:00:00.79 Elapsed: 00:00:00.43
# Mc/sec: 3818.58
//
Query:       KOO22392.1  [L=181]
Description: peptidyl-prolyl cis-trans isomerase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.2e-38  132.8   0.1    1.4e-38  132.7   0.1    1.0  1  Pro_isomerase  Cyclophilin type peptidyl-prolyl cis-trans iso


Domain annotation for each model (and alignments):
>> Pro_isomerase  Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  132.7   0.1   7.7e-43   1.4e-38       3     157 ..       7     177 ..       5     178 .. 0.88

  Alignments for each domain:
  == domain 1  score: 132.7 bits;  conditional E-value: 7.7e-43
  Pro_isomerase   3 dietsskGrivieLfadkaPktvenFlklvkegfYdgttFhRvikgfmvq.........gGdptgkts...ageqekkggesiraipdEitsklkh 86 
                    +++t  +G+i++e+f dk+P+t++nF++l+++gfY+g++FhRvi++fm q         gG p+g+ +   +g  e  +  +  +i+dE + k+++
     KOO22392.1   7 TFSTT-MGDIKCEIFLDKMPITASNFIDLAQSGFYNGLHFHRVIPDFMDQdpksqqagtGGPPDGTFKnlvTGAIE--KRSNGGNIKDEYAAKISN 99 
                    78895.*******************************************999988988777777654454422212..2223369*********** PP

  Pro_isomerase  87 krGalamartgkepnsagsqFfItlkeaphldg......kytvFGkVv..eGmdvvekiekvetdeerpkknvkivsae 157
                    ++G+l+ma+tg +pns+gsqFf+++ ++++ld       k+ vFGk +   ++d++ ki+ v+t+++ p ++++++s++
     KOO22392.1 100 EPGTLSMANTG-QPNSGGSQFFMNTVHNDFLDWfspgesKHPVFGKAIdkASFDIMVKISMVRTKDDCPIQPIQMKSVT 177
                    **********8.6*******************999*************989************************9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (181 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       213  (0.0118802); expected 358.6 (0.02)
Passed bias filter:                      199  (0.0110993); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.23s 00:00:00.63 Elapsed: 00:00:00.40
# Mc/sec: 1358.66
//
Query:       KOO22393.1  [L=365]
Description: transcriptional activator myb [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.8e-25   87.8   0.1    3.3e-11   43.2   0.0    2.4  2  Myb_DNA-binding  Myb-like DNA-binding domain
    4.2e-17   62.1   0.1      8e-08   32.4   0.0    2.2  2  Myb_DNA-bind_6   Myb-like DNA-binding domain
    3.1e-07   30.2   0.0      0.013   15.3   0.0    2.3  2  Myb_DNA-bind_7   Myb DNA-binding like
    5.3e-05   23.3   0.1       0.21   11.8   0.0    2.2  2  SANT_DAMP1_like  SANT/Myb-like domain of DAMP1


Domain annotation for each model (and alignments):
>> Myb_DNA-binding  Myb-like DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.2   0.1   1.5e-14   6.6e-11       2      44 ..     173     215 ..     172     216 .. 0.95
   2 !   43.2   0.0   7.3e-15   3.3e-11       4      44 ..     235     275 ..     233     277 .. 0.96

  Alignments for each domain:
  == domain 1  score: 42.2 bits;  conditional E-value: 1.5e-14
                      SSSBHHHHHHHHHHHHHHTTCHHHHHHHHTSS-HHHHHHHHHH CS
  Myb_DNA-binding   2 gkWteeEdelLleavkkhGnrWkkIaerlggRtekqcrsrwrn 44 
                      + W+ +Ede++ ea k+ G rW+ Ia+ l gRt+ ++r+r+++
       KOO22393.1 173 QGWSRDEDEKIMEAYKEKGPRWAVIAQSLSGRTDDAVRNRYLR 215
                      67***************************************97 PP

  == domain 2  score: 43.2 bits;  conditional E-value: 7.3e-15
                      SBHHHHHHHHHHHHHHTTCHHHHHHHHTSS-HHHHHHHHHH CS
  Myb_DNA-binding   4 WteeEdelLleavkkhGnrWkkIaerlggRtekqcrsrwrn 44 
                      Wt+ Ed+l+ ++v+++G +W  Ia+ l+gR+++++r+r+++
       KOO22393.1 235 WTTAEDDLINDGVQRYGQKWHVIADFLPGRSANAVRNRYLR 275
                      ***************************************86 PP

>> Myb_DNA-bind_6  Myb-like DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.6   0.1   5.9e-10   2.7e-06       1      46 [.     175     219 ..     175     231 .. 0.88
   2 !   32.4   0.0   1.8e-11     8e-08       1      42 [.     235     276 ..     235     290 .. 0.92

  Alignments for each domain:
  == domain 1  score: 27.6 bits;  conditional E-value: 5.9e-10
  Myb_DNA-bind_6   1 WteeEdeiLlklvekygndWknIaeal.nrRtpkqcfdrwknkLrpk 46 
                     W+ +Ede++ + +++ g  W  Ia+ l + Rt  ++++r+++ L+ k
      KOO22393.1 175 WSRDEDEKIMEAYKEKGPRWAVIAQSLsG-RTDDAVRNRYLR-LSKK 219
                     ***************************55.************.8653 PP

  == domain 2  score: 32.4 bits;  conditional E-value: 1.8e-11
  Myb_DNA-bind_6   1 WteeEdeiLlklvekygndWknIaealnrRtpkqcfdrwknk 42 
                     Wt +Ed+++ ++v++yg++W+ Ia+ l+ R+++++++r++++
      KOO22393.1 235 WTTAEDDLINDGVQRYGQKWHVIADFLPGRSANAVRNRYLRQ 276
                     ***************************55**********994 PP

>> Myb_DNA-bind_7  Myb DNA-binding like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.8   0.0   1.8e-05     0.082       7      57 ..     171     221 ..     164     231 .. 0.90
   2 !   15.3   0.0     3e-06     0.013       7      52 ..     231     276 ..     224     285 .. 0.90

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 1.8e-05
  Myb_DNA-bind_7   7 ktkkWskeetekFYkaLsqfGtDFsliaklfpkrtrrqlKlKFkkEerknp 57 
                     +++ Ws +e ek  +a ++ G  + +ia+ +++rt++ +++++ +  +kn 
      KOO22393.1 171 TKQGWSRDEDEKIMEAYKEKGPRWAVIAQSLSGRTDDAVRNRYLRLSKKNG 221
                     6789***************************************99888886 PP

  == domain 2  score: 15.3 bits;  conditional E-value: 3e-06
  Myb_DNA-bind_7   7 ktkkWskeetekFYkaLsqfGtDFsliaklfpkrtrrqlKlKFkkE 52 
                     k + W+++e ++  ++++ +G+ +++ia ++p+r+ + +++++ + 
      KOO22393.1 231 KGDMWTTAEDDLINDGVQRYGQKWHVIADFLPGRSANAVRNRYLRQ 276
                     6789**************************************9775 PP

>> SANT_DAMP1_like  SANT/Myb-like domain of DAMP1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.3   0.0   0.00028       1.3      25      56 ..     171     202 ..     165     221 .. 0.81
   2 !   11.8   0.0   4.6e-05      0.21      24      54 ..     229     260 ..     222     278 .. 0.83

  Alignments for each domain:
  == domain 1  score: 9.3 bits;  conditional E-value: 0.00028
  SANT_DAMP1_like  25 keedWtkeetdyLfdlckeydlrfvviaDrye 56 
                      +++ W+++e +++++ +ke   r+ via   +
       KOO22393.1 171 TKQGWSRDEDEKIMEAYKEKGPRWAVIAQSLS 202
                      5678***********************97655 PP

  == domain 2  score: 11.8 bits;  conditional E-value: 4.6e-05
  SANT_DAMP1_like  24 lke.edWtkeetdyLfdlckeydlrfvviaDr 54 
                      lk+ + Wt  e d + d +++y  +++viaD 
       KOO22393.1 229 LKKgDMWTTAEDDLINDGVQRYGQKWHVIADF 260
                      555366************************95 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (365 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       740  (0.0412739); expected 358.6 (0.02)
Passed bias filter:                      260  (0.0145016); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.45u 0.28s 00:00:00.73 Elapsed: 00:00:00.42
# Mc/sec: 2586.98
//
Query:       KOO22394.1  [L=754]
Description: protein nlrc3 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.2e-06   27.4   0.6         25    5.9   0.0    6.4  7  LRR_1     Leucine Rich Repeat
    7.1e-06   25.7   3.8         22    4.9   0.0    6.4  6  LRR_8     Leucine rich repeat
    1.1e-05   25.7  12.8         11    6.6   0.0    6.7  6  LRR_4     Leucine Rich repeats (2 copies)
     0.0014   18.5  23.5        9.4    6.6   0.1    8.8  9  LRR_6     Leucine Rich repeat
  ------ inclusion threshold ------
      0.012   15.4   0.5         11    5.9   0.0    3.7  3  TetR_N    Bacterial regulatory proteins, tetR family
      0.012   15.7   0.0      0.092   12.9   0.0    2.5  2  Skp1      Skp1 family, dimerisation domain
        0.2   12.1   0.5        7.6    7.0   0.1    3.4  3  HOASN     Haem-oxygenase-associated N-terminal helices


Domain annotation for each model (and alignments):
>> LRR_1  Leucine Rich Repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.0       6.8   1.7e+04       4      15 ..     401     411 ..     400     419 .. 0.72
   2 ?    3.0   0.0     0.088   2.2e+02       2      12 ..     455     465 ..     454     473 .. 0.78
   3 ?    1.5   0.0      0.28   7.1e+02       2      13 ..     490     501 ..     489     509 .. 0.88
   4 ?    4.3   0.0     0.034        87       2      13 ..     523     534 ..     522     544 .. 0.87
   5 ?   -1.9   0.0       3.7   9.5e+03       2      15 ..     565     578 ..     564     583 .. 0.82
   6 !    5.9   0.0    0.0098        25       2      13 ..     611     625 ..     610     646 .. 0.74
   7 ?    3.4   0.0     0.065   1.7e+02       2      13 ..     717     728 ..     716     743 .. 0.87

  Alignments for each domain:
  == domain 1  score: -2.7 bits;  conditional E-value: 6.8
       LRR_1   4 hLdLsnnpllgl 15 
                 +LdL+n  l + 
  KOO22394.1 401 ELDLRNKGL-QG 411
                 799988665.44 PP

  == domain 2  score: 3.0 bits;  conditional E-value: 0.088
       LRR_1   2 LrhLdLsnnpl 12 
                 L++Ld+s+ + 
  KOO22394.1 455 LKELDISGSFH 465
                 9******9985 PP

  == domain 3  score: 1.5 bits;  conditional E-value: 0.28
       LRR_1   2 LrhLdLsnnpll 13 
                 L++++Ls n+l+
  KOO22394.1 490 LTSINLSKNHLT 501
                 899******995 PP

  == domain 4  score: 4.3 bits;  conditional E-value: 0.034
       LRR_1   2 LrhLdLsnnpll 13 
                 L+++dLsnn+l 
  KOO22394.1 523 LTSIDLSNNRLC 534
                 89*******994 PP

  == domain 5  score: -1.9 bits;  conditional E-value: 3.7
       LRR_1   2 LrhLdLsnnpllgl 15 
                 L+++ L nn ++g+
  KOO22394.1 565 LTSISLANNMISGI 578
                 8999****988655 PP

  == domain 6  score: 5.9 bits;  conditional E-value: 0.0098
       LRR_1   2 LrhLdLsnnpl...l 13 
                 Lr+ dLsnn+l    
  KOO22394.1 611 LRSVDLSNNSLagvN 625
                 9*********95440 PP

  == domain 7  score: 3.4 bits;  conditional E-value: 0.065
       LRR_1   2 LrhLdLsnnpll 13 
                 L++++Ls+n+l+
  KOO22394.1 717 LTSINLSGNRLT 728
                 89*******995 PP

>> LRR_8  Leucine rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.3   0.1      0.35   9.1e+02      15      15 ..     439     439 ..     425     464 .. 0.43
   2 ?    4.4   0.0     0.012        31      26      40 ..     489     503 ..     484     515 .. 0.70
   3 ?    3.1   0.0      0.03        78      27      37 ..     523     533 ..     516     537 .. 0.64
   4 ?    3.6   0.0     0.022        56      25      45 ..     563     583 ..     550     590 .. 0.73
   5 ?    3.2   0.0      0.03        77       3      16 ..     611     624 ..     602     630 .. 0.65
   6 !    4.9   0.0    0.0084        22      26      40 ..     716     730 ..     706     741 .. 0.70

  Alignments for each domain:
  == domain 1  score: -0.3 bits;  conditional E-value: 0.35
                 E CS
       LRR_8  15 s 15 
                 +
  KOO22394.1 439 E 439
                 1 PP

  == domain 2  score: 4.4 bits;  conditional E-value: 0.012
                 T--EEE--SS---GG CS
       LRR_8  26 nLkvLdLsnNllttl 40 
                 +L++++Ls N lt  
  KOO22394.1 489 GLTSINLSKNHLTNY 503
                 577777777777765 PP

  == domain 3  score: 3.1 bits;  conditional E-value: 0.03
                 --EEE--SS-- CS
       LRR_8  27 LkvLdLsnNll 37 
                 L+++dLsnN+l
  KOO22394.1 523 LTSIDLSNNRL 533
                 45555555544 PP

  == domain 4  score: 3.6 bits;  conditional E-value: 0.022
                 TT--EEE--SS---GGGGGGG CS
       LRR_8  25 snLkvLdLsnNllttlspgaf 45 
                  +L++++L nN ++ +  +  
  KOO22394.1 563 GALTSISLANNMISGIGGQYS 583
                 579999999999999876655 PP

  == domain 5  score: 3.2 bits;  conditional E-value: 0.03
                 -SEEE-TTS--SEE CS
       LRR_8   3 LtsLdLsnNrltsl 16 
                 L+s+dLsnN+l ++
  KOO22394.1 611 LRSVDLSNNSLAGV 624
                 55555555555544 PP

  == domain 6  score: 4.9 bits;  conditional E-value: 0.0084
                 T--EEE--SS---GG CS
       LRR_8  26 nLkvLdLsnNllttl 40 
                 +L++++Ls N+lt  
  KOO22394.1 716 GLTSINLSGNRLTNY 730
                 566677777776665 PP

>> LRR_4  Leucine Rich repeats (2 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.0       3.6   9.1e+03       4      11 ..     400     407 ..     399     411 .. 0.58
   2 !    6.6   0.0    0.0041        11       3      32 ..     427     462 ..     426     470 .. 0.87
   3 ?    3.1   3.8     0.053   1.3e+02       3      33 ..     490     531 ..     489     534 .. 0.57
   4 ?    4.4   0.0     0.021        55       3      17 ..     565     579 ..     564     586 .. 0.87
   5 ?    3.6   0.1     0.037        95       3      14 ..     611     622 ..     600     627 .. 0.80
   6 !    5.6   0.0    0.0089        23       3      15 ..     717     729 ..     716     747 .. 0.75

  Alignments for each domain:
  == domain 1  score: -2.7 bits;  conditional E-value: 3.6
                 -EEE--SS CS
       LRR_4   4 evLdLsnN 11 
                 ++LdL+n 
  KOO22394.1 400 TELDLRNK 407
                 45666654 PP

  == domain 2  score: 6.6 bits;  conditional E-value: 0.0041
                 --EEE--SS---E-S-......HHH-TT--EEE-.- CS
       LRR_4   3 LevLdLsnNqltdipl......leklpnLkeLdLsg 32 
                 L++++L+ N+l + +       le+++ LkeLd+sg
  KOO22394.1 427 LTKISLAENKLGEEGTkaiceaLEQNKTLKELDISG 462
                 99*****99***9888888777669999******88 PP

  == domain 3  score: 3.1 bits;  conditional E-value: 0.053
                 --EEE--SS---E-S-.......HH...H.-TT--EEE-.-S CS
       LRR_4   3 LevLdLsnNqltdipl.......le...k.lpnLkeLdLsgN 33 
                 L++++Ls N+lt  +        l+   + +  L+++dLs+N
  KOO22394.1 490 LTSINLSKNHLTNYGTdmtgvkeLAaalGvNGGLTSIDLSNN 531
                 888999988977765555443332244443444777777444 PP

  == domain 4  score: 4.4 bits;  conditional E-value: 0.021
                 --EEE--SS---E-S CS
       LRR_4   3 LevLdLsnNqltdip 17 
                 L++++L+nN+++ i+
  KOO22394.1 565 LTSISLANNMISGIG 579
                 999********9987 PP

  == domain 5  score: 3.6 bits;  conditional E-value: 0.037
                 --EEE--SS--- CS
       LRR_4   3 LevLdLsnNqlt 14 
                 L+++dLsnN l 
  KOO22394.1 611 LRSVDLSNNSLA 622
                 777888888775 PP

  == domain 6  score: 5.6 bits;  conditional E-value: 0.0089
                 --EEE--SS---E CS
       LRR_4   3 LevLdLsnNqltd 15 
                 L++++Ls+N+lt 
  KOO22394.1 717 LTSINLSGNRLTN 729
                 8899999999997 PP

>> LRR_6  Leucine Rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.0      0.98   2.5e+03       4      11 ..     398     405 ..     398     417 .. 0.86
   2 ?    4.8   0.1     0.014        36       5      24 .]     427     446 ..     426     446 .. 0.95
   3 ?    5.0   0.0     0.012        30       1      12 [.     451     462 ..     451     463 .. 0.91
   4 ?    3.6   0.3     0.032        83       5      17 ..     490     502 ..     487     504 .. 0.91
   5 ?    2.5   0.2     0.073   1.9e+02       5      16 ..     523     534 ..     520     536 .. 0.87
   6 ?   -1.1   0.1       1.1   2.8e+03       5      20 ..     565     580 ..     565     581 .. 0.88
   7 !    6.6   0.1    0.0037       9.4       2      15 ..     608     621 ..     607     624 .. 0.86
   8 ?   -0.6   0.0      0.75   1.9e+03      12      24 .]     657     669 ..     657     669 .. 0.93
   9 ?    4.7   0.2     0.015        38       5      17 ..     717     729 ..     716     731 .. 0.91

  Alignments for each domain:
  == domain 1  score: -1.0 bits;  conditional E-value: 0.98
       LRR_6   4 hLteLdLs 11 
                 ++teLdL+
  KOO22394.1 398 TMTELDLR 405
                 7899**97 PP

  == domain 2  score: 4.8 bits;  conditional E-value: 0.014
       LRR_6   5 LteLdLsgNdIgDeGaeaLa 24 
                 Lt+ +L+ N++g eG +a++
  KOO22394.1 427 LTKISLAENKLGEEGTKAIC 446
                 899*************9998 PP

  == domain 3  score: 5.0 bits;  conditional E-value: 0.012
       LRR_6   1 snthLteLdLsg 12 
                 +n +L+eLd+sg
  KOO22394.1 451 QNKTLKELDISG 462
                 599*******97 PP

  == domain 4  score: 3.6 bits;  conditional E-value: 0.032
       LRR_6   5 LteLdLsgNdIgD 17 
                 Lt+ +Ls N++++
  KOO22394.1 490 LTSINLSKNHLTN 502
                 9*********997 PP

  == domain 5  score: 2.5 bits;  conditional E-value: 0.073
       LRR_6   5 LteLdLsgNdIg 16 
                 Lt+ dLs N + 
  KOO22394.1 523 LTSIDLSNNRLC 534
                 9********975 PP

  == domain 6  score: -1.1 bits;  conditional E-value: 1.1
       LRR_6   5 LteLdLsgNdIgDeGa 20 
                 Lt+ +L+ N I++ G+
  KOO22394.1 565 LTSISLANNMISGIGG 580
                 8999*****9999886 PP

  == domain 7  score: 6.6 bits;  conditional E-value: 0.0037
       LRR_6   2 nthLteLdLsgNdI 15 
                 +++L+++dLs N +
  KOO22394.1 608 SMTLRSVDLSNNSL 621
                 79**********77 PP

  == domain 8  score: -0.6 bits;  conditional E-value: 0.75
       LRR_6  12 gNdIgDeGaeaLa 24 
                 gN+++ e a+ La
  KOO22394.1 657 GNQLDAESAKMLA 669
                 6*********998 PP

  == domain 9  score: 4.7 bits;  conditional E-value: 0.015
       LRR_6   5 LteLdLsgNdIgD 17 
                 Lt+ +LsgN +++
  KOO22394.1 717 LTSINLSGNRLTN 729
                 9*********997 PP

>> TetR_N  Bacterial regulatory proteins, tetR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.0         1   2.7e+03      16      31 ..     474     489 ..     473     490 .. 0.86
   2 ?    5.9   0.0    0.0042        11      12      31 ..     503     522 ..     498     523 .. 0.89
   3 ?    5.1   0.0    0.0075        19      12      31 ..     730     749 ..     727     750 .. 0.89

  Alignments for each domain:
  == domain 1  score: -1.7 bits;  conditional E-value: 1
                 T--HHHHHHHHTSSHH CS
      TetR_N  16 attvreIAkrAGvskg 31 
                 a++v+ +Ak +Gv+ g
  KOO22394.1 474 AAGVKHVAKMLGVNGG 489
                 78999********976 PP

  == domain 2  score: 5.9 bits;  conditional E-value: 0.0042
                 HHTTT--HHHHHHHHTSSHH CS
      TetR_N  12 rGydattvreIAkrAGvskg 31 
                 +G d t+v+e+A+++Gv+ g
  KOO22394.1 503 YGTDMTGVKELAAALGVNGG 522
                 69999************976 PP

  == domain 3  score: 5.1 bits;  conditional E-value: 0.0075
                 HHTTT--HHHHHHHHTSSHH CS
      TetR_N  12 rGydattvreIAkrAGvskg 31 
                 +G d t+++e+A+++Gv+ g
  KOO22394.1 730 YGTDMTGIKELAAALGVNGG 749
                 69999************976 PP

>> Skp1  Skp1 family, dimerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.0       1.9   4.9e+03      16      24 ..     103     111 ..     100     113 .. 0.87
   2 ?   12.9   0.0   3.6e-05     0.092      11      43 ..     158     191 ..     149     193 .. 0.92

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 1.9
        Skp1  16 kgktpeeiR 24 
                 ++k++ee+R
  KOO22394.1 103 QNKSFEELR 111
                 58******9 PP

  == domain 2  score: 12.9 bits;  conditional E-value: 3.6e-05
        Skp1  11 vAdmikgktpeeiReiFnIenDft.pEEeeeirk 43 
                 +A+++ g++ +e+R++++   Df   E e+++ +
  KOO22394.1 158 IASRVNGMNADELRALLGAGSDFDgTELEAALAE 191
                 79**********************9999998765 PP

>> HOASN  Haem-oxygenase-associated N-terminal helices
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.0       1.7   4.4e+03      20      45 ..     511     536 ..     493     551 .. 0.73
   2 ?    0.8   0.1      0.26   6.7e+02      20      45 ..     553     578 ..     538     588 .. 0.83
   3 ?    7.0   0.1     0.003       7.6      14      50 ..     593     629 ..     583     634 .. 0.88

  Alignments for each domain:
  == domain 1  score: -1.9 bits;  conditional E-value: 1.7
                 HHHHHHTSTT--HHHHHHHHHHHHHH CS
       HOASN  20 alladalkvgasldqidlalekllal 45 
                 + la al v+  l  idl+ ++l  +
  KOO22394.1 511 KELAAALGVNGGLTSIDLSNNRLCGV 536
                 458999***********999988776 PP

  == domain 2  score: 0.8 bits;  conditional E-value: 0.26
                 HHHHHHTSTT--HHHHHHHHHHHHHH CS
       HOASN  20 alladalkvgasldqidlalekllal 45 
                   +ada++v+ +l  i la + +  +
  KOO22394.1 553 TAIADAMRVNGALTSISLANNMISGI 578
                 568***************99988765 PP

  == domain 3  score: 7.0 bits;  conditional E-value: 0.003
                 --SHHHHHHHHHTSTT--HHHHHHHHHHHHHHHHHHH CS
       HOASN  14 lpieeaalladalkvgasldqidlalekllalaekGl 50 
                 + ie  a ladal    +l+ +dl+ + l+ +   G 
  KOO22394.1 593 FSIEGIAALADALSKSMTLRSVDLSNNSLAGVNRSGH 629
                 67899999**********************9998885 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (754 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       374  (0.0208601); expected 358.6 (0.02)
Passed bias filter:                      329  (0.0183502); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.59u 0.27s 00:00:00.86 Elapsed: 00:00:00.42
# Mc/sec: 5393.67
//
Query:       KOO22395.1  [L=360]
Description: adenosine deaminase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.5e-37  129.0   0.0    3.2e-37  128.6   0.0    1.1  1  A_deaminase   Adenosine/AMP deaminase
     0.0047   16.7   0.1        0.6    9.9   0.0    2.3  2  MutL_C        MutL C terminal dimerisation domain
  ------ inclusion threshold ------
       0.01   15.2   0.0      0.042   13.2   0.0    1.9  1  Amidohydro_1  Amidohydrolase family


Domain annotation for each model (and alignments):
>> A_deaminase  Adenosine/AMP deaminase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  128.6   0.0   5.4e-41   3.2e-37       2     316 ..      18     328 ..      17     334 .. 0.86

  Alignments for each domain:
  == domain 1  score: 128.6 bits;  conditional E-value: 5.4e-41
                  S-EEEEEEECCCSS-HHHHHHHHHHHCHT..SS-SCCCCCCCCHCHCCHHHHCCHCCCHHCCCHHHTCCCCCCHHHHHHCCCCCHCTTCCCCCCCCSH CS
  A_deaminase   2 lpKvdlHvHldgclnpktllrlakkkgikeldekvveedeklltlqekfesLkeflydlsvdvlvlhwlievvrllavekakdlakdfvkylevifsP 99 
                  lpK++lH Hl gc++ +t+ +la           +  e+ +  +  ++ +sL+   + + +  + +  +  +vr+++ e+ +d+a+d+vkyle++ +P
   KOO22395.1  18 LPKAELHAHLHGCARLDTVRELAPPGV-------DKAELRNTSEVGQNDRSLDACFAIFGAIHKTVT-TLAAVRRITREVLSDFAADGVKYLELRTTP 107
                  8******************99986655.......446677777888999******************.****************************** PP

                  HHHHHH-GCSTCCHHHHCCCCCCCCCCHCCT-EEEEEECCETT.....TCCGHCCCHHHHHHCCCC..CCCCCCCCC-TTSTTGGGHHHHHCCCCHTT CS
  A_deaminase 100 lfeatagpqlpelevvlkvvdgfdsvedeskvkerlilvksrk.....peewseeinelasyyrdy..tvvnldllndekiepaslflklraeagkst 190
                     a a+ +      +l+ v  f++ + + +++  ++++ + +       + +  +++la++ r +  ++v++d ++++++   ++f +++++a+ ++
   KOO22395.1 108 RTLADADVE-GYVRALLAEVASFEAEQVAQGISWPMTVRLLLSvdrsgDTAKAMVTVQLATRLRAElgCIVGVDFSGNPTRSSFEHFREAFEAARLAG 204
                  ****99933.4455555666666666666665555554444446665656666667788888877677*********999999999************ PP

                  -EEEEEESSSS-CHHHHHHHHCS--SCECE-GGGGGSHHHHHHHHHCT-EEEE-HHHHCCCSST-TTTT-C.HHHHHHTT-EEEE--BSCCCCT-SHH CS
  A_deaminase 191 llltpHaGEagglehvveAllllkaerigHGvrlrkdpvLqyllalaqiplevcPlSNvalgafleyaenP.lkeflerglnvslntDDPlqfgttLi 287
                  l++++H GE+ ++e  ++ +++ + er+gH ++l      +++l+++ ip+e+cP+SN ++   +e++ +P l ++l +g +vs++tDD  +f+tt +
   KOO22395.1 205 LRVAVHVGEVNAPEDTAAVIDF-RPERLGHALLLSTHD--LKRLRERPIPIELCPTSNLKTLQLNELESHPtLTTWLAEGYPVSISTDDSTVFDTTSS 299
                  ***************9877777.*******99886554..689****************************8899*********************** PP

                  HHHHHHHHHHT--HHHHHHHHHHHHHCSS CS
  A_deaminase 288 eeYaiaaqvfklseedlaelarNsvkqsf 316
                   e a aa + +ls e++a+la+  +  +f
   KOO22395.1 300 RELALAAMACHLSVEEIAQLAQAPLAHAF 328
                  ********************987666665 PP

>> MutL_C  MutL C terminal dimerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.9   0.0    0.0001       0.6      86     123 ..      96     133 ..      80     143 .. 0.87
   2 !    4.5   0.0    0.0046        28     124     143 ..     296     315 ..     285     319 .. 0.79

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.0001
                 -STTEEEEEEEECCCTTTSHHHHHHHHHHHHCCCSS-H CS
      MutL_C  86 fgpnslivravPallrqqnleelirelleelaekgkes 123
                  g + l +r++P  l ++++e  +r+ll+e+a+ + e+
  KOO22395.1  96 DGVKYLELRTTPRTLADADVEGYVRALLAEVASFEAEQ 133
                 5778899*************************998644 PP

  == domain 2  score: 4.5 bits;  conditional E-value: 0.0046
                 -HCCHHHHHHHHCTTSSSSS CS
      MutL_C 124 leekleellatmachssvka 143
                  ++++e +la mach sv++
  KOO22395.1 296 TTSSRELALAAMACHLSVEE 315
                 36789999*********987 PP

>> Amidohydro_1  Amidohydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.0     7e-06     0.042     126     288 ..     185     319 ..     116     329 .. 0.72

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 7e-06
                   TCCSHHHHHHHHHHHHHHHTTEEEEEETSSCHHHHHHHHHHTTTEEEETTTTSTCCHHTTTHCCEEEHCTCEEEHHHHHHHHHHHHHHCEEHHHHHH CS
  Amidohydro_1 126 apafsdeelkealkeakkrdlpvaiHaletkgevedaeaafgetiehgthlevaeslglldeiklilahgvhltpteaellkerlkeagvahcpfsn 222
                   ++  s e  +ea+++a+ ++l va+H++e ++   d+ a ++    +    e+             l h  +l+ +++++l+er   + + +cp+sn
    KOO22395.1 185 PTRSSFEHFREAFEAARLAGLRVAVHVGEVNAPE-DTAAVID----F--RPER-------------LGHALLLSTHDLKRLRER--PIPIELCPTSN 259
                   4556788999999999999********8877774.5555555....2..4555.............789999999999**9999..99999****** PP

                   HH......SEHHHHHHHHHHHHTSCEEEEEECTTSSCCGGHHHHHHHHHHHHHHCCTTTTHCHCHHHHHHHH CS
  Amidohydro_1 223 si......lrsgrealrkaldeGvkvglgtDgaasgnslnlleelrlalklqrgllyedeegglslkealrm 288
                   ++      l+s+   l   l eG  v+++tD+    ++ +  +el+la+   +       +++ls++e+ ++
    KOO22395.1 260 LKtlqlneLESHP-TLTTWLAEGYPVSISTDDSTVFDTTSS-RELALAA---M-------ACHLSVEEIAQL 319
                   **99998777775.45555566*********7766666655.7777777...2.......566666666555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (360 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       391  (0.0218082); expected 358.6 (0.02)
Passed bias filter:                      334  (0.018629); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.45u 0.26s 00:00:00.71 Elapsed: 00:00:00.42
# Mc/sec: 2577.95
//
Query:       KOO22396.1  [L=997]
Description: hypothetical protein Ctob_007397 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    9.2e-11   40.5   4.2    7.3e-05   22.0   0.0    3.0  2  EF-hand_1  EF hand
    7.9e-10   39.1   5.1    3.9e-09   36.8   0.6    3.6  3  EF-hand_7  EF-hand domain pair
      5e-09   35.2   6.9    8.9e-06   25.0   0.1    3.1  3  EF-hand_5  EF hand
    4.4e-08   32.4   2.3     0.0027   17.5   0.0    3.2  2  EF-hand_6  EF-hand domain
    0.00027   20.7   1.4        1.1    9.2   0.0    2.8  2  EF-hand_8  EF-hand domain pair
  ------ inclusion threshold ------
      0.075   13.4   0.0        5.7    7.3   0.0    3.7  4  HBS1_N     HBS1 N-terminus
       0.16   12.0   0.0       0.34   11.0   0.0    1.4  1  PIF3       Per os infectivity factor 3


Domain annotation for each model (and alignments):
>> EF-hand_1  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.0   0.0   2.9e-08   7.3e-05       3      27 ..      30      54 ..      28      56 .. 0.91
   2 !   17.2   2.4     1e-06    0.0026       3      28 ..      74      99 ..      72     100 .. 0.86

  Alignments for each domain:
  == domain 1  score: 22.0 bits;  conditional E-value: 2.9e-08
                HHHHHHHTTTSSSEEEHHHHHHHHH CS
   EF-hand_1  3 keiFrefDkDgdGkIdfeEfkellk 27
                +++F+++D+Dg+G +d+eE+k+ll 
  KOO22396.1 30 EDAFSKADVDGSGAVDKEELKKLLW 54
                79********************986 PP

  == domain 2  score: 17.2 bits;  conditional E-value: 1e-06
                HHHHHHHTTTSSSEEEHHHHHHHHHH CS
   EF-hand_1  3 keiFrefDkDgdGkIdfeEfkellkk 28
                ++ F ++DkDg+G +df+Ef+e+ +k
  KOO22396.1 74 EKEFGIADKDGSGDVDFDEFIEYYNK 99
                677999**************998765 PP

>> EF-hand_7  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.8   0.6   1.5e-12   3.9e-09       3      70 ..      28      97 ..      26      98 .. 0.81
   2 ?   -3.6   0.0       6.5   1.7e+04      50      62 ..     335     347 ..     332     348 .. 0.79
   3 ?    2.2   0.1     0.098   2.5e+02      27      61 ..     564     600 ..     518     603 .. 0.75

  Alignments for each domain:
  == domain 1  score: 36.8 bits;  conditional E-value: 1.5e-12
   EF-hand_7  3 klkeaFkelDtdgdgyldkeellrllrkifqga..gegsklsdeelellfkefDtdkdGvisfdEFlkly 70
                + ++aF + D+dg+g +dkeel++ll  + q+     +  +  e +e+ f   D+d++G ++fdEF ++y
  KOO22396.1 28 AAEDAFSKADVDGSGAVDKEELKKLLWGLLQHQghKCDATIINEFVEKEFGIADKDGSGDVDFDEFIEYY 97
                67899*******************77776664332333333447799*********************98 PP

  == domain 2  score: -3.6 bits;  conditional E-value: 6.5
   EF-hand_7  50 fkefDtdkdGvis 62 
                 +k+fD  +d v++
  KOO22396.1 335 LKCFDDQSDLVVN 347
                 79***99998876 PP

  == domain 3  score: 2.2 bits;  conditional E-value: 0.098
   EF-hand_7  27 llrkifqga..gegsklsdeelellfkefDtdkdGvi 61 
                 +l++  + +    g k+s+ e e+l++e+++ + +v+
  KOO22396.1 564 FLTQAGTVIrrAQGTKPSRAETERLLREMNSESERVL 600
                 3333333335577788899999999999988877766 PP

>> EF-hand_5  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.0   0.1   3.5e-09   8.9e-06       3      25 .]      31      53 ..      29      53 .. 0.92
   2 !   12.6   0.9   2.9e-05     0.075       5      22 ..      77      94 ..      73     101 .. 0.86
   3 ?   -2.6   0.0       1.8   4.6e+03      14      20 ..     812     818 ..     812     821 .. 0.86

  Alignments for each domain:
  == domain 1  score: 25.0 bits;  conditional E-value: 3.5e-09
                HHHHHH-SS-SSCE-HHHHHHHH CS
   EF-hand_5  3 dtFqaiDlNgDGkIskeELktlv 25
                d+F+++D++g+G ++keELk+l+
  KOO22396.1 31 DAFSKADVDGSGAVDKEELKKLL 53
                78******************985 PP

  == domain 2  score: 12.6 bits;  conditional E-value: 2.9e-05
                HHHH-SS-SSCE-HHHHH CS
   EF-hand_5  5 FqaiDlNgDGkIskeELk 22
                F  +D++g+G ++++E+ 
  KOO22396.1 77 FGIADKDGSGDVDFDEFI 94
                889**************4 PP

  == domain 3  score: -2.6 bits;  conditional E-value: 1.8
                 SCE-HHH CS
   EF-hand_5  14 GkIskeE 20 
                 G +s+eE
  KOO22396.1 812 GVVSREE 818
                 89***** PP

>> EF-hand_6  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5   0.0   1.1e-06    0.0027       3      26 ..      30      53 ..      28      53 .. 0.93
   2 !   12.9   0.7   3.2e-05     0.081       6      28 ..      77      99 ..      72     107 .. 0.86

  Alignments for each domain:
  == domain 1  score: 17.5 bits;  conditional E-value: 1.1e-06
   EF-hand_6  3 reaFklfDkdgdGkidaeElrkal 26
                ++aF + D+dg+G +d+eEl+k+l
  KOO22396.1 30 EDAFSKADVDGSGAVDKEELKKLL 53
                68*******************987 PP

  == domain 2  score: 12.9 bits;  conditional E-value: 3.2e-05
   EF-hand_6  6 FklfDkdgdGkidaeElrkalrk 28
                F + Dkdg+G +d++E++  ++k
  KOO22396.1 77 FGIADKDGSGDVDFDEFIEYYNK 99
                9999*************998875 PP

>> EF-hand_8  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.2   0.0   0.00042       1.1      28      51 ..      29      52 ..      25      53 .. 0.88
   2 !    8.8   1.0   0.00057       1.5      35      53 ..      80      98 ..      71      99 .. 0.88

  Alignments for each domain:
  == domain 1  score: 9.2 bits;  conditional E-value: 0.00042
   EF-hand_8 28 vdilfrefDtdgdGkisfeEFcvl 51
                +++ f+++D dg+G++++eE   l
  KOO22396.1 29 AEDAFSKADVDGSGAVDKEELKKL 52
                6788****************9876 PP

  == domain 2  score: 8.8 bits;  conditional E-value: 0.00057
   EF-hand_8 35 fDtdgdGkisfeEFcvlle 53
                +D dg+G ++f+EF++++ 
  KOO22396.1 80 ADKDGSGDVDFDEFIEYYN 98
                79*************9975 PP

>> HBS1_N  HBS1 N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.0         2   5.2e+03      34      70 ..     374     410 ..     373     417 .. 0.82
   2 ?    7.3   0.0    0.0022       5.7      34      76 ..     417     457 ..     383     459 .. 0.79
   3 ?    0.9   0.0      0.23   5.9e+02      56      68 ..     786     798 ..     763     800 .. 0.86
   4 ?   -2.1   0.0         2   5.1e+03      30      37 ..     927     934 ..     905     974 .. 0.54

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 2
      HBS1_N  34 evLgeeaskvtvtekqikeAlwkyyyDvekaldylln 70 
                 +++++++++   +e++++ Al     D ++a + l++
  KOO22396.1 374 KEVASKQGPKRFPEEDLHLALKAKRNDPTEAAKMLVE 410
                 677788888889999*****99999999999888765 PP

  == domain 2  score: 7.3 bits;  conditional E-value: 0.0022
      HBS1_N  34 evLgeeaskvtvtekqikeAlwkyyyDvekaldyllnkfkkkk 76 
                 + L++  ++   t + +  Al  +++D e al yl+n++k  +
  KOO22396.1 417 NTLDKRGGHS--TRAGVRYALQLCNFDEEAALWYLKNSEKVVT 457
                 4566666676..78888889999***************98655 PP

  == domain 3  score: 0.9 bits;  conditional E-value: 0.23
      HBS1_N  56 kyyyDvekaldyl 68 
                 k+++D ek+ +yl
  KOO22396.1 786 KFKFDTEKSANYL 798
                 899*********8 PP

  == domain 4  score: -2.1 bits;  conditional E-value: 2
      HBS1_N  30 devrevLg 37 
                 ++v e+Lg
  KOO22396.1 927 KKVSEILG 934
                 44445555 PP

>> PIF3  Per os infectivity factor 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   0.00013      0.34      60      93 ..     859     893 ..     839     901 .. 0.75

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00013
        PIF3  60 kGllkvytavee.lvvkklClslyrdvvdDddklr 93 
                 k +l++  +ve+ ++v++ Cls+yr++++Dd +l 
  KOO22396.1 859 KAMLSLAWGVEDrVTVTQRCLSTYRKLMQDDTQLM 893
                 5556555555551699***************9886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (997 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       717  (0.0399911); expected 358.6 (0.02)
Passed bias filter:                      497  (0.0277205); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.70u 0.27s 00:00:00.97 Elapsed: 00:00:00.40
# Mc/sec: 7406.47
//
Query:       KOO22397.1  [L=679]
Description: protein sel-1-like 1-like protein, partial [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.3e-48  161.5  52.8    8.2e-08   32.7   1.4   11.3 11  Sel1      Sel1 repeat
  ------ inclusion threshold ------
        0.2   11.1   0.0       0.35   10.3   0.0    1.3  1  DUF373    Domain of unknown function (DUF373)


Domain annotation for each model (and alignments):
>> Sel1  Sel1 repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.6   0.4   3.2e-09   2.9e-05       1      38 []     112     147 ..     112     147 .. 0.97
   2 !    9.8   0.0   0.00015       1.4       2      38 .]     149     183 ..     148     183 .. 0.93
   3 ?    0.5   0.2      0.13   1.1e+03       2      17 ..     185     198 ..     184     212 .. 0.81
   4 !   21.2   0.4   3.8e-08   0.00034       2      36 ..     267     300 ..     266     302 .. 0.91
   5 !   26.2   0.1     1e-09     9e-06       5      38 .]     307     338 ..     303     338 .. 0.93
   6 !   32.7   1.4   9.2e-12   8.2e-08       1      38 []     339     374 ..     339     374 .. 0.96
   7 !   23.2   1.2   8.6e-09   7.7e-05       1      38 []     375     410 ..     375     410 .. 0.94
   8 !   12.5   0.0   2.1e-05      0.18       3      22 ..     413     430 ..     411     445 .. 0.82
   9 !    5.3   0.5    0.0038        34      25      38 .]     512     525 ..     510     525 .. 0.92
  10 !   16.8   0.4   9.3e-07    0.0083       2      35 ..     527     558 ..     526     561 .. 0.91
  11 !   20.5   0.7   6.1e-08   0.00055       1      30 [.     562     589 ..     562     592 .. 0.93

  Alignments for each domain:
  == domain 1  score: 24.6 bits;  conditional E-value: 3.2e-09
        Sel1   1 aeAmyrLGmfylylnGlgvpkDpekAiewyekAAeqGd 38 
                 a+Am  LG   ++l G gv +D   A+++ye AAe+Gd
  KOO22397.1 112 AAAMRELG--HMHLRGEGVTADAAVAVRHYEHAAELGD 147
                 68******..***************************7 PP

  == domain 2  score: 9.8 bits;  conditional E-value: 0.00015
        Sel1   2 eAmyrLGmfylylnGlgvpkDpekAiewyekAAeqGd 38 
                 e++  LG   l+ +G g p+D  +A  ++  AAe Gd
  KOO22397.1 149 ESQSILG--VLHSTGFGAPRDAPLAATYMYFAAEGGD 183
                 67888**..999**********************997 PP

  == domain 3  score: 0.5 bits;  conditional E-value: 0.13
        Sel1   2 eAmyrLGmfylylnGl 17 
                 +A+ ++G  y +l G 
  KOO22397.1 185 HAQLAMG--YRHLLGV 198
                 6999999..*999985 PP

  == domain 4  score: 21.2 bits;  conditional E-value: 3.8e-08
        Sel1   2 eAmyrLGmfylylnGl.gvpkDpekAiewyekAAeq 36 
                 +A+  LG   l+++G  g+p+D+ kA+ +y kAA +
  KOO22397.1 267 DAQLTLG--HLHFHGArGLPADVAKAFGYYSKAAGA 300
                 68888**..*******99***************955 PP

  == domain 5  score: 26.2 bits;  conditional E-value: 1e-09
        Sel1   5 yrLGmfylylnGlgvpkDpekAiewyekAAeqGd 38 
                 ++LG   +y nGlgv+++   A+e+++k A++++
  KOO22397.1 307 AQLG--HMYANGLGVEQNNVTALEYFRKGAAKDH 338
                 58**..9************************998 PP

  == domain 6  score: 32.7 bits;  conditional E-value: 9.2e-12
        Sel1   1 aeAmyrLGmfylylnGlgvpkDpekAiewyekAAeqGd 38 
                 +++++ LG  y++++G gv+++++kA e+++ AAe+G+
  KOO22397.1 339 PASQNGLG--YMFMHGYGVDRNYKKAAEYFKAAAERGN 374
                 689*****..999***********************97 PP

  == domain 7  score: 23.2 bits;  conditional E-value: 8.6e-09
        Sel1   1 aeAmyrLGmfylylnGlgvpkDpekAiewyekAAeqGd 38 
                 a+A+++LG   ++  G g++k ++kA++++ +AA qG+
  KOO22397.1 375 ADAQFNLG--AMHIGGMGLKKAYDKALHYFTLAAHQGH 410
                 68******..888999999******************9 PP

  == domain 8  score: 12.5 bits;  conditional E-value: 2.1e-05
        Sel1   3 AmyrLGmfylylnGlgvpkD 22 
                 A+y+L+  +++lnGlg p+ 
  KOO22397.1 413 ALYNLA--QMHLNGLGAPRS 430
                 99****..********9985 PP

  == domain 9  score: 5.3 bits;  conditional E-value: 0.0038
        Sel1  25 kAiewyekAAeqGd 38 
                 +A++ y++AA+qG+
  KOO22397.1 512 RALHMYRLAAQQGN 525
                 8************7 PP

  == domain 10  score: 16.8 bits;  conditional E-value: 9.3e-07
        Sel1   2 eAmyrLGmfylylnGlgvpkDpekAiewyekAAe 35 
                 eA  +LG +   ++G g+++D e A+ +y+ A e
  KOO22397.1 527 EAELKLGDYK--FYGYGTERDLEAAVSHYRAASE 558
                 899****777..99999*************9988 PP

  == domain 11  score: 20.5 bits;  conditional E-value: 6.1e-08
        Sel1   1 aeAmyrLGmfylylnGlgvpkDpekAiewy 30 
                 a+ m++L+  y+y +Glg+ +D+++A ++y
  KOO22397.1 562 AHGMFNLA--YMYAHGLGLTRDYHLAKRHY 589
                 679*****..999*************9998 PP

>> DUF373  Domain of unknown function (DUF373)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.0   3.9e-05      0.35     190     261 ..     346     417 ..     344     452 .. 0.84

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 3.9e-05
      DUF373 190 lylllrGfgldelleelleklkesleegritfvtyvvallllligiisgyislesvssasvssglltlilaf 261
                 +y+++ G+g+d++ ++++e +k + e+g+    +++ a+ +  +g+ ++y ++ ++ + ++ +g + ++  +
  KOO22397.1 346 GYMFMHGYGVDRNYKKAAEYFKAAAERGNADAQFNLGAMHIGGMGLKKAYDKALHYFTLAAHQGHTLALYNL 417
                 59***************************************************9999966666666555544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (679 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       581  (0.0324056); expected 358.6 (0.02)
Passed bias filter:                      429  (0.0239277); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.63u 0.28s 00:00:00.91 Elapsed: 00:00:00.46
# Mc/sec: 4394.41
//
Query:       KOO22398.1  [L=1117]
Description: insulin-degrading-like metalloprotease family [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    9.1e-33  113.7   0.0    1.5e-32  113.0   0.0    1.4  1  Peptidase_M16_M  Middle or third domain of peptidase_M16
    1.2e-27   96.7   0.0    3.5e-27   95.2   0.0    1.8  1  Peptidase_M16    Insulinase (Peptidase family M16)
      1e-21   77.8   0.0    1.5e-12   47.9   0.0    2.7  3  Peptidase_M16_C  Peptidase M16 inactive domain


Domain annotation for each model (and alignments):
>> Peptidase_M16_M  Middle or third domain of peptidase_M16
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  113.0   0.0   2.5e-36   1.5e-32       1     278 [.     475     817 ..     475     818 .. 0.87

  Alignments for each domain:
  == domain 1  score: 113.0 bits;  conditional E-value: 2.5e-36
  Peptidase_M16_M   1 FrFkekeepsdyvsslaenmqkyppedvlsgpyll..eeydpelikellss.Ltpenarivlvske............td.............. 65 
                      F ++e++++++ + + a+++ +y  ++vl+g ++l  e++ + +++e l     p n+++v  s              +d              
       KOO22398.1 475 FVYAERGDAFSETADWARRLYTYGGRHVLTGGRVLdgETFPAAAVREALGTyVVPANCMVVRESTAfkaglaatmeedEDedegdsvsvgvpvg 568
                      88*********************************8778999****9998769*******9999956899888776541155667788888888 PP

  Peptidase_M16_M  66 ..............ekekwygteYsvekiseelleewksae..............eneeLhLPepNpFiptdfslk.......kesesepakaP 124
                                      e +y+++Y+ +++++elle +++a+                + +hLPepNpF+++df++        + +    + +P
       KOO22398.1 569 agpptrdtpsfdelFLETYYQIPYERRAVPSELLEALRHASegqftvtdatgatsAGPLMHLPEPNPFLTSDFRMVdalstasPGVPPLVPAPP 662
                      8888888887766666799*******************776689*********997789*****************777655322333556677 PP

  Peptidase_M16_M 125 elirdtelvr..lWykkDdtFkvPkasvrlklrsplasksprnavltelfvellkdslneylydAelAglsyslssskeglelsvsGYndklpv 216
                      + ++  e +r   W+++  +F +Pka+v ++l        + ++v ++l+  +l+++l+  ly+A lAgl +s+ + +++l+ls+ G++++lp 
       KOO22398.1 663 RQLQRAEESRivHWHQTELSFGKPKAHVVVSLCITTG---LLHSVHMDLLLAILEQRLAVALYPAYLAGLRWSFGHGPRALTLSAHGFSERLPA 753
                      8888777777558*******************99877...****************************************************** PP

  Peptidase_M16_M 217 Llekvleklknf..eikedrFevikekllrelknfklekpyqqarellsslleekawtleelle 278
                      L+ ++l++l     + +   Fe  +e ++r+l+  ++++  ++a ++l  ll+ ++  +ee l+
       KOO22398.1 754 LVSTLLRELLRWdpTETARLFEAKRELQTRQLRSHSKRRADELAYYFLGLLLRPRRRPVEESLA 817
                      *********9763344455599999*****************************9999999876 PP

>> Peptidase_M16  Insulinase (Peptidase family M16)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   95.2   0.0   5.9e-31   3.5e-27       9     142 ..      76     206 ..      69     213 .. 0.87

  Alignments for each domain:
  == domain 1  score: 95.2 bits;  conditional E-value: 5.9e-31
                    SSSEEEEEEEES.-SGGGSCTTTTTHHHHHHHHTTSBBSSSCH.HHHHHHHHHTTCEEEEEEESSEEEEEEEEEGGGHHHHHHHHHHHHH.SBTTS CS
  Peptidase_M16   9 paktsavglvvd.aGSryepkdlnGlAHllehmafkgTkkyps.nklaeeleklGgslnAttsrentvYyvevlskdlekaldvladvfk.aplle 101
                     ++++a++++v+ aG+r  p +l GlAH+lehm+f+g+kkyps   + ++++ ++g++nA+t  e+tvY++ev++  le++ld++a++f  +pll+
     KOO22398.1  76 AEQRAAAAMCVEgAGARTAPIELVGLAHYLEHMLFLGSKKYPSeSHYKKVVALHNGRCNASTAPEKTVYHFEVDAAGLEDVLDIFAQFFVgEPLLD 171
                    56788888888549*************************************************************************986389999 PP

                    HHHHHHHHHHHHHHHHHHCCHH.HHHHHHHHHHHHTTTSGGG CS
  Peptidase_M16 102 esevererkvvekeveavdaep.ekvveenlhaaayrekalg 142
                    e + er       e++av ae+ ++++ + + + +  ++++ 
     KOO22398.1 172 EGAAER-------ELNAVTAEDaRNRINDDRRKRMVVQHTVP 206
                    99****.......99999999977777777777766666655 PP

>> Peptidase_M16_C  Peptidase M16 inactive domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.9   0.0   2.5e-16   1.5e-12       6     160 ..     241     449 ..     238     459 .. 0.91
   2 ?   -3.6   0.0       1.6   9.5e+03      22      89 ..     742     807 ..     737     820 .. 0.56
   3 !   26.9   0.0   7.1e-10   4.3e-06      22     183 .]     843    1012 ..     821    1012 .. 0.75

  Alignments for each domain:
  == domain 1  score: 47.9 bits;  conditional E-value: 2.5e-16
                      HHHHHHHHHSSGGGEEEEEEESS-HHHHHHHHHHHHTTSTHHSH............................................CSGSCT CS
  Peptidase_M16_C   6 dlkefykkfYrpenmvlaivGdvdheelvkliekyfgdlkaska............................................ppakpt 55 
                       l +++++fYr ++m la+v+  + +el++l+++ fg   + +                                               +   
       KOO22398.1 241 ALLAYRERFYRLDHMSLALVSAASLDELEALARRIFGPAFSPDGgailptvmdsgggvlaggaaaapepeearaaraaatlvneaadlAASAEV 334
                      5889*********************************98866669*******************************************899999 PP

                      SSSSSGGGSSEEEEEEEESSS.SSEEEEEEEEEECT...CTHTTHHHHHHHHHHHHSSTTSHHHHHHHTTTTSESEEEEEEEEES.SCEEEEEE CS
  Peptidase_M16_C  56 gepltpatlkkppvvlkklde.eqahlslafegpsk...endeddlalavlntlLgggmesrLytnlrekeglaysvsafndsyr.dsglfgis 144
                      g+  ++a+   +p+ l+  +  e+ ++sl++++p+      ++ + a  +l+++Lg++ e++L+ +l+ + gla++vsa++ ++  d +++ + 
       KOO22398.1 335 GVAHPWADAGLWPFELRIAPItERRCVSLMWPMPPSasqHRHPCSPAARYLSYVLGHEGEGSLFAALQ-RLGLATHVSAGSYIDDaDIYMLLVK 427
                      999999******************************99899999************************.***********888888*****999 PP

                      EEEECT......THHHHHHHHH CS
  Peptidase_M16_C 145 atadpe......nveevvevil 160
                      +++++e       v+ +v +++
       KOO22398.1 428 VSLTTEgeaqlrSVLALVYAAV 449
                      9999998774433333444444 PP

  == domain 2  score: -3.6 bits;  conditional E-value: 1.6
                      EEEEESS-HHHHHHHHHHHHTTSTHHSHCSGSCTSSSSSGGGSSEEEEEEEES...SSSSEEEEEEEEEEC CS
  Peptidase_M16_C  22 laivGdvdheelvkliekyfgdlkaskappakptgepltpatlkkppvvlkkl...deeqahlslafegps 89 
                      l+++G +++ +l +l+  ++ +l   +  p++ ++ +    +l++++ + + +   d e a++ l++++ +
       KOO22398.1 742 LSAHG-FSE-RLPALVSTLLRELLRWD--PTETARLFEAKRELQTRQLRSHSKrraD-ELAYYFLGLLLRP 807
                      55555.555.55555555555555555..6666666666677777777777773223.4555555544444 PP

  == domain 3  score: 26.9 bits;  conditional E-value: 7.1e-10
                       EEEEESS-HHHHHHHHHHHHTTSTHHSH..CSGSCTSSSSSGGGSSEEEEEEEES....SSSSEEEEEEEEEECTCTHTTHHHHHHHHHHHH CS
  Peptidase_M16_C   22 laivGdvdheelvkliekyfgdlkaska..ppakptgepltpatlkkppvvlkkl....deeqahlslafegpskendeddlalavlntlLg 107 
                          +G++d+ ++ +l+++    + a+ a   p++ +++++      +++ +l+      +e+++ +  + ++ ++    +++ l +l +lL 
       KOO22398.1  843 ALTFGNLDEARAAHLADDIERAIHATGAapLPRDEWVFTPVATLGAGSRWRLRLPpqskEENNSAVVHYVQLGQLRGSARHAQLTLLLRLLK 934 
                       5679********************9999986777777777755555555555554668755444444445555555**************** PP

                       SSTTSHHHHHHHTTTTSESEEEEE.EEEES.SCEEEEEEEEEECT.....THHHHHHHHHHHHHHHHHHTS-HHHHHHHHHHH CS
  Peptidase_M16_C  108 ggmesrLytnlrekeglaysvsaf.ndsyr.dsglfgisatadpe.....nveevvevilkelrklkkeglteeeleraknql 183 
                       +     L+++lr+k++l+y v ++ +d+      + g+ +++ ++      v+ +v++ ++ + ++++  lt +e++ ++++l
       KOO22398.1  935 QP----LFDALRTKQQLGYVVASSaFDQHVgRDEVHGLVVQVLSKsyappAVQRAVDAYMRGFPQVVRA-LTAAEFDTSRQAL 1012
                       **....**************9999877666855555555555555333448888***************.*******999886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1117 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       414  (0.0230911); expected 358.6 (0.02)
Passed bias filter:                      290  (0.0161749); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.71u 0.28s 00:00:00.99 Elapsed: 00:00:00.45
# Mc/sec: 7455.51
//
Query:       KOO22399.1  [L=855]
Description: glutathione-disulfide reductase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    9.9e-54  182.6   1.5    1.4e-53  182.1   1.5    1.2  1  Pyr_redox_2    Pyridine nucleotide-disulphide oxidoreductase
    1.4e-44  152.3   0.0    7.5e-44  149.9   0.0    2.0  1  Met_10         Met-10+ like-protein
      1e-32  112.6   0.3    2.6e-32  111.4   0.3    1.7  1  Pyr_redox_dim  Pyridine nucleotide-disulphide oxidoreductase,
    6.5e-18   65.1   2.3    1.7e-14   54.1   0.1    2.7  2  Pyr_redox      Pyridine nucleotide-disulphide oxidoreductase
      2e-13   50.3   0.0    9.4e-10   38.2   0.0    2.2  2  Pyr_redox_3    Pyridine nucleotide-disulphide oxidoreductase
    3.3e-05   23.1   6.2    0.00062   18.9   0.6    3.1  3  FAD_binding_2  FAD binding domain
    0.00032   20.2   2.5    0.00056   19.4   2.5    1.4  1  FAD_oxidored   FAD dependent oxidoreductase
     0.0034   16.2   2.8      0.021   13.5   0.8    2.7  3  HI0933_like    HI0933-like protein
     0.0047   16.2   4.2       0.14   11.4   0.1    2.5  2  FAD_binding_3  FAD binding domain
  ------ inclusion threshold ------
       0.01   15.1   1.9       0.14   11.4   0.3    2.5  2  AlaDh_PNT_C    Alanine dehydrogenase/PNT, C-terminal domain
      0.029   14.6   0.6      0.029   14.6   0.6    2.4  2  NAD_binding_8  NAD(P)-binding Rossmann-like domain
      0.048   12.8   0.0       0.08   12.1   0.0    1.3  1  K_oxygenase    L-lysine 6-monooxygenase (NADPH-requiring)
      0.064   12.3   4.7      0.025   13.7   0.9    1.9  2  GIDA           Glucose inhibited division protein A
       0.24   10.7   1.3        5.5    6.3   0.1    2.5  2  2-Hacid_dh_C   D-isomer specific 2-hydroxyacid dehydrogenase,
       0.46   10.4   2.3         13    5.6   0.4    2.4  2  3HCDH_N        3-hydroxyacyl-CoA dehydrogenase, NAD binding d


Domain annotation for each model (and alignments):
>> Pyr_redox_2  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  182.1   1.5   1.1e-56   1.4e-53       1     294 []     360     693 ..     360     693 .. 0.93

  Alignments for each domain:
  == domain 1  score: 182.1 bits;  conditional E-value: 1.1e-56
                  CSEEEE--SHHHHHHHHHHHHHTS-EEEEE...............TTHCHHHCSHHHHCHHHHHHHHHHHHH.........................H CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...............xxxxxxxxxxxxxxxxxxxxxxxxxxx.........................x RF
  Pyr_redox_2   1 kdvvviGgGpAGlaaaltlaqagakvtlve...............legtclnggcllskallgvaedaeias.........................e 58 
                  +d++viG+G +G+a a+++a +g +v+lve                +gtc+n+gc+++k +  +a++ e a+                         +
   KOO22399.1 360 YDYLVIGAGSGGVASARRAAMYGKRVVLVErgpewaeggervgagYGGTCVNVGCVPKKLMFTAASFLESAEesvgygiehvapprlnwpalvkardK 457
                  6899*************************6666677777788888**********************999999************************9 PP

                  HHHCHHHHCCCCHCCTCEEEEESCEEEEETEEEC..TCEEEEEESEEEE---EEE-BCTCTTC.TTBEECCSECHHHHHHCCSS-TSEEEEES-SHHH CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2  59 vvkklnqgielllgeevvkidpgkkkvklekkke..gdeekiaydklvlAtGssprdlgipGvaenvgklvrtldsaealklkllpkrivvvGgGyiG 154
                   v++ln  + + l++++v+   g ++++   ++e  + ++++++d++++A G+ p  + ipG+     +l  ++ s   ++lk++p++++vvG+GyiG
   KOO22399.1 458 YVERLNGIYARNLDSSGVERVVGVARFVGPREVEvaSAGRRLTADHVLIAVGGAPTMPEIPGA-----DL--SISSNGFFELKEQPQKALVVGSGYIG 548
                  99************99999889999****9999999999************************.....34..6899********************** PP

                  HHHHHHHHHHT-EEEEEESSSSSS.TTS-HHHHHHHHHHHHHTTEEEEESCEEE.EEEETTE.EEEEEETTSCE.EEESEEEE-S-EEES-HHCS.HC CS
                  xxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxx.xxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxx.xx RF
  Pyr_redox_2 155 vElAaalaklgkevtlveardrll.raldkelsaaleealekeGvevklgtsvk.eidgnge.klevvledgee.idadlvvvavGvrpstelle.ek 247
                  vElA+ l+ +g+++t++ +++ +l r++d+ +++ l+++l ++Gv+++++++ + ++++  +  ++ +l++ge+    d+v++avG+ p t+ l+   
   KOO22399.1 549 VELAGILNAIGCDTTILCRGNGVLrRGFDPLITEVLNDELVRSGVALRTNSTEVaALKRSADgTIDATLGSGEVlSGFDCVMFAVGRHPATAALNlGC 646
                  ************************************************997655155555558888999999996679******************** PP

                  CT-EEEETTEEE--TTSBESSTTEEE-GGGCTECCSS--HHHHHHHH CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2 248 lglelderggivvdeflrtnvpgiyaiGDvaggkggpelaqaAvqqG 294
                   g+++de+g++ vd+f+ t v+giy +GD a +  g+el+++A+++G
   KOO22399.1 647 TGVTVDEAGRVRVDDFQWTGVDGIYCLGDAATTNIGFELTPVAIAAG 693
                  *******************************999999******9987 PP

>> Met_10  Met-10+ like-protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  149.9   0.0   6.3e-47   7.5e-44       2     153 ..     131     298 ..     130     309 .. 0.92

  Alignments for each domain:
  == domain 1  score: 149.9 bits;  conditional E-value: 6.3e-47
                 EEEEETTEEEEEB-TTSSHHHHHHHHHHHHHS..S-SCEEEE-S-S................BTTTTB--EEEEEES-.SEEEEEETTEEEEEETTTS- CS
      Met_10   2 kfeiiGdvvilnlreelkeykkvigevildkt..kvktvlrkvsev................egefRtfelevlaGsdstetihkEngcrfklDvskvy 82 
                  fe++G+++++nlr+e  +yk++ig+v+l+k+  ++++v++kv+++                + +fR+f++evlaG+ ++ t ++Eng rf+lD+ +vy
  KOO22399.1 131 AFEQVGHIAHVNLRAEHLPYKRLIGQVLLEKNspRLRSVVNKVESLsrdgtaadqrtasdekAWRFRVFPMEVLAGESNLLTSVRENGARFELDYREVY 229
                 599****************************99889*******99988776666655444333369***********99******************** PP

                 --GGGHHHHHHHHTT--TT-EEEETT-TTTCCHHHCCHHTTSSEEEEEES-HHHHHHHHHHHHHTT-TTCE CS
      Met_10  83 fsskleaErerlaklveegevVvdvfAGiGpfaipiakyskakrvlaidlnPesvkylkeniklNkvekvv 153
                 ++s+le+E++r++++  +  vV d fAGiGpfa+p+a   ++  v+a+dlnP+s ++l +n++ Nkv++ +
  KOO22399.1 230 WNSRLETEHKRIVEQLGPSAVVADAFAGIGPFAVPAAL--RGASVYANDLNPASHQFLVRNVEINKVASAL 298
                 *************************************9..9999***********************9876 PP

>> Pyr_redox_dim  Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  111.4   0.3   2.2e-35   2.6e-32       1     109 [.     714     826 ..     714     827 .. 0.98

  Alignments for each domain:
  == domain 1  score: 111.4 bits;  conditional E-value: 2.2e-35
                    BEEEEESSSEEEEEES-HHHHHHHHSG..EEEEEEEEECGHHHCHTTH..TEEEEEEEEETTTTBEEEEEEECTTHHHHHHHHHHHHHTTSBHHHH CS
  Pyr_redox_dim   1 iptvvftdpevasvGlteeeAkaagie..ikvgkfpfkangralayae..tkgfvKlvadaktgkvlGahivGpgageliqelavaikagltvedl 92 
                    iptvvf++p++++vGlte +A+++++e  ++ ++++fk++ +al +++  + + +Klv+  ++++v+G+h++G  a+e++q++a+a+k+g+t++d+
     KOO22399.1 714 IPTVVFSHPPIGTVGLTEPQARKEYGEsnVRAYTSRFKPMHYALSDEHakKPMAMKLVCVGDEERVVGLHVIGVFADEMLQGFALALKMGATKADF 809
                    7*********************************************999999******************************************** PP

                    HTSBSSSSSTGGGGHCH CS
  Pyr_redox_dim  93 adtihihPtlsealkea 109
                    ++ ++ihPt se+++++
     KOO22399.1 810 DNVVAIHPTASEEFVTM 826
                    **************997 PP

>> Pyr_redox  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.0   0.2   0.00085         1       3      33 ..     363     393 ..     361     399 .. 0.93
   2 !   54.1   0.1   1.4e-17   1.7e-14       1      72 [.     538     611 ..     538     618 .. 0.92

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.00085
                 EEECSSHHHHHHHHHHHHTTSEEEEEESSSS CS
   Pyr_redox   3 vvvGgGyiglElAgalaelgkkVtvversdk 33 
                 +v+G+G  g+  A  +a +gk+V +ver+++
  KOO22399.1 363 LVIGAGSGGVASARRAAMYGKRVVLVERGPE 393
                 7***************************987 PP

  == domain 2  score: 54.1 bits;  conditional E-value: 1.4e-17
                 EEEEECSSHHHHHHHHHHHHTTSEEEEEESSSSSS.TTSSHHHHHHHHHHHHHTTEEEECS.EEEEEEEEETTS CS
   Pyr_redox   1 kvvvvGgGyiglElAgalaelgkkVtvversdkll.rllDeeaskilqeklekngievlln.tkveeiegsedg 72 
                 k++vvG+Gyig+ElAg+l+++g+++t++ r++ +l r++D+ + ++l ++l + g+ +++n t+v++++ s+dg
  KOO22399.1 538 KALVVGSGYIGVELAGILNAIGCDTTILCRGNGVLrRGFDPLITEVLNDELVRSGVALRTNsTEVAALKRSADG 611
                 579*********************************************************93468888888887 PP

>> Pyr_redox_3  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.8   0.1   0.00036      0.43     166     201 ..     361     396 ..     336     403 .. 0.74
   2 !   38.2   0.0   7.9e-13   9.4e-10      95     305 .]     469     674 ..     437     674 .. 0.81

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.00036
  Pyr_redox_3 166 kvvViGgknSavDaAlelvrkgaeVtvvtrgseiek 201
                  +++ViG++  +v  A   + +g++V +v rg e+ +
   KOO22399.1 361 DYLVIGAGSGGVASARRAAMYGKRVVLVERGPEWAE 396
                  677777777777777777777777777777777765 PP

  == domain 2  score: 38.2 bits;  conditional E-value: 7.9e-13
  Pyr_redox_3  95 elpiklfeeVesvkk..edegfevetsketyeAkkviiAtGefdkPnklnipGeeklvkhyskvkefhkyagqkvvViGgknSavDaAlelvrkgaeV 190
                  +l+    e+V  v++    ++ ev +  + ++A++v+iA G    P +++ipG++ l++ +  + e+ k + qk +V+G +  +v+ A  l + g++ 
   KOO22399.1 469 NLDSSGVERVVGVARfvGPREVEVASAGRRLTADHVLIAVGG--APTMPEIPGAD-LSISSNGFFEL-KEQPQKALVVGSGYIGVELAGILNAIGCDT 562
                  56666667788888853456788999999************8..**********9.99999999999.7889************************** PP

  Pyr_redox_3 191 tvvtrgseiekeesdpsyslkpdienrleelvkeekikvlfna.evkeik.ekeeeykvktedgkkvevkddvvlatGykpdlsflkk..slfelded 284
                  t++ rg+ + ++         p i + l++ + ++ + + +n+ ev ++k   + +++ +  +g+ ++  d v++a+G +p +  l+    +++ de 
   KOO22399.1 563 TILCRGNGVLRRG------FDPLITEVLNDELVRSGVALRTNStEVAALKrSADGTIDATLGSGEVLSGFDCVMFAVGRHPATAALNLgcTGVTVDEA 654
                  *******999886......6677777776544443355555431566666256778899999999999999*************99888889999999 PP

  Pyr_redox_3 285 grpvlteeteetnvpglflaG 305
                  gr+ +++  + t v+g++  G
   KOO22399.1 655 GRVRVDDF-QWTGVDGIYCLG 674
                  99999875.458899999887 PP

>> FAD_binding_2  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.9   0.6   5.2e-07   0.00062       1      44 [.     361     398 ..     361     401 .. 0.94
   2 ?   -0.8   0.0      0.52   6.3e+02     156     206 ..     459     514 ..     446     544 .. 0.67
   3 !    5.3   0.2    0.0071       8.5     373     403 ..     646     678 ..     629     684 .. 0.87

  Alignments for each domain:
  == domain 1  score: 18.9 bits;  conditional E-value: 5.2e-07
                    SEEEE--SHHHHHHHHHHHHTTT-EEEEESSSGGGSGGGG--S- CS
  FAD_binding_2   1 DviViGsGlAGLaAAleaaeaGlkvavvekeqefggatawsqGg 44 
                    D +ViG+G +G a+A +aa  G++v++ve ++e      w++Gg
     KOO22399.1 361 DYLVIGAGSGGVASARRAAMYGKRVVLVERGPE------WAEGG 398
                    789****************************99......88876 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 0.52
                    EEEEESEEEEEEEECTT..EEEEEEEEETTTTCEE.......EEEESEEEE-----GG.. CS
  FAD_binding_2 156 vdfqerteadeLivedg..rvtGavvenpesgrev.......rirakavvlatgGfgral 206
                    v+ ++ ++a++L   +g  rv+G+      ++rev       r++a++v++a gG++  +
     KOO22399.1 459 VERLNGIYARNLDS-SGveRVVGVARF--VGPREVevasagrRLTADHVLIAVGGAPT-M 514
                    66667777777733.224566665433..3444444445555899**********996.3 PP

  == domain 3  score: 5.3 bits;  conditional E-value: 0.0071
                    S-EEEBETTSBE..STTEEESSBTEEE-STCEE CS
  FAD_binding_2 373 mgGvetdengrv..ldadgqpipGLYAaGevaa 403
                    + Gv++de grv  +d + + ++G Y+ G +a 
     KOO22399.1 646 CTGVTVDEAGRVrvDDFQWTGVDGIYCLGDAAT 678
                    78**********88888999*********9994 PP

>> FAD_oxidored  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.4   2.5   4.7e-07   0.00056       1      33 [.     361     393 ..     361     418 .. 0.88

  Alignments for each domain:
  == domain 1  score: 19.4 bits;  conditional E-value: 4.7e-07
  FAD_oxidored   1 DvvVvGGgpaGvaAAiaAaraGakvlLveergv 33 
                   D +V+G+g++Gva A  Aa  G++v+Lve+ + 
    KOO22399.1 361 DYLVIGAGSGGVASARRAAMYGKRVVLVERGPE 393
                   669**************************9874 PP

>> HI0933_like  HI0933-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.5   0.8   1.7e-05     0.021       2      36 ..     361     395 ..     360     420 .. 0.86
   2 ?    0.0   0.0      0.22   2.6e+02     144     169 ..     491     516 ..     474     525 .. 0.77
   3 ?   -0.4   0.0       0.3   3.6e+02     111     163 ..     580     634 ..     579     656 .. 0.74

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 1.7e-05
                  SEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSS- CS
  HI0933_like   2 dviviGgGaAGlmaAisaakrgkrVlllekakklg 36 
                  d +viG+G  G+  A +aa  gkrV+l+e++++ +
   KOO22399.1 361 DYLVIGAGSGGVASARRAAMYGKRVVLVERGPEWA 395
                  779**************************998764 PP

  == domain 2  score: 0.0 bits;  conditional E-value: 0.22
                  EEEE.TTEEEEESEEEE----S.S-GG CS
  HI0933_like 144 rvktkseeeleadklvlAtGGl.SiPk 169
                  +v+   +++l+ad++++A+GG+  +P+
   KOO22399.1 491 EVAS-AGRRLTADHVLIAVGGApTMPE 516
                  4444.8999************734565 PP

  == domain 3  score: -0.4 bits;  conditional E-value: 0.3
                  HHHHHHHHHHHHT-EEE-S.--EEEEECETTE.EEEEE.TTEEEEE.SEEEE--- CS
  HI0933_like 111 ivdallkelkeagvklrle.tevksvekeedgkfrvktkseeelea.dklvlAtG 163
                  i ++l  el ++gv lr++ tev+++++++dg++  ++ s+e l+  d +++A+G
   KOO22399.1 580 ITEVLNDELVRSGVALRTNsTEVAALKRSADGTIDATLGSGEVLSGfDCVMFAVG 634
                  678999**********9973689*********99999955555543255666766 PP

>> FAD_binding_3  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.4   0.1   0.00011      0.14       3      33 ..     361     391 ..     359     400 .. 0.91
   2 !    5.3   0.9    0.0082       9.7       4      32 ..     539     567 ..     537     575 .. 0.90

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00011
                    EEEEE--SHHHHHHHHHHHHTTHHEEEEESS CS
  FAD_binding_3   3 dVlIVGaGpaGlmlallLseaGvrvvlvekr 33 
                    d l++GaG  G+ +a+  +++G rvvlve+ 
     KOO22399.1 361 DYLVIGAGSGGVASARRAAMYGKRVVLVERG 391
                    669**************************96 PP

  == domain 2  score: 5.3 bits;  conditional E-value: 0.0082
                    EEEE--SHHHHHHHHHHHHTTHHEEEEES CS
  FAD_binding_3   4 VlIVGaGpaGlmlallLseaGvrvvlvek 32 
                     l+VG+G  G+ la +L   G +++++ +
     KOO22399.1 539 ALVVGSGYIGVELAGILNAIGCDTTILCR 567
                    69**********************99866 PP

>> AlaDh_PNT_C  Alanine dehydrogenase/PNT, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.3   0.00012      0.14      20      71 ..     351     402 ..     338     442 .. 0.82
   2 ?    2.3   0.1     0.073        87      27      57 ..     535     565 ..     531     615 .. 0.90

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00012
                  TCEETCB---EEEEESTSHHHHHHHHHHHHTT-EEEEEESSHHHHHHHHHTT CS
  AlaDh_PNT_C  20 aGgvpgvepakvlviGgGvaGlqAiatakglgakVtvlDvrparleqleslg 71 
                   + v+g ++   lviG+G  G+++++ a+  g +V++++  p+ +e  e +g
   KOO22399.1 351 TAHVTGSDHYDYLVIGAGSGGVASARRAAMYGKRVVLVERGPEWAEGGERVG 402
                  56788999999****************************9999888777633 PP

  == domain 2  score: 2.3 bits;  conditional E-value: 0.073
                  ---EEEEESTSHHHHHHHHHHHHTT-EEEEE CS
  AlaDh_PNT_C  27 epakvlviGgGvaGlqAiatakglgakVtvl 57 
                  +p k lv+G G  G++ + + +++g ++t+l
   KOO22399.1 535 QPQKALVVGSGYIGVELAGILNAIGCDTTIL 565
                  68899********************999987 PP

>> NAD_binding_8  NAD(P)-binding Rossmann-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.6   0.6   2.4e-05     0.029       1      29 [.     364     392 ..     364     398 .. 0.95
   2 ?   -1.8   0.8       3.3   3.9e+03       1      25 [.     541     565 ..     541     571 .. 0.82

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 2.4e-05
                    EE--SHHHHHHHHHHHCCTEEEEEE-SSS CS
  NAD_binding_8   1 IvGaGlsGlvaAylLakagfdvlllekrd 29 
                    ++GaG +G + A+++a +g++v+l+e+++
     KOO22399.1 364 VIGAGSGGVASARRAAMYGKRVVLVERGP 392
                    8*************************997 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 3.3
                    EE--SHHHHHHHHHHHCCTEEEEEE CS
  NAD_binding_8   1 IvGaGlsGlvaAylLakagfdvlll 25 
                    +vG+G  G  +A  L   g+d ++l
     KOO22399.1 541 VVGSGYIGVELAGILNAIGCDTTIL 565
                    8*******99998888888888876 PP

>> K_oxygenase  L-lysine 6-monooxygenase (NADPH-requiring)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   6.7e-05      0.08     142     247 ..     494     590 ..     475     616 .. 0.73

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 6.7e-05
  K_oxygenase 142 geeeelearnlvlgvGtepkiPevleklegkervvHsseylerkeellakkriaVvGsGqSaaeifedllrrqkkvelklvtrsealeplddspfvne 239
                     ++l+a +++++vG+ p++Pe+  +    +  + s+ + e k   +++++ +VvGsG  + e++  l +     + +++ r++++      p++ e
   KOO22399.1 494 SAGRRLTADHVLIAVGGAPTMPEIPGA----DLSISSNGFFELK---EQPQKALVVGSGYIGVELAGILNAIG--CDTTILCRGNGVLRRGFDPLITE 582
                  4568999***************98774....4457777777776...688899*******9999876554433..35556666666666666666666 PP

  K_oxygenase 240 ifsPeyvd 247
                  +++ e v+
   KOO22399.1 583 VLNDELVR 590
                  66655555 PP

>> GIDA  Glucose inhibited division protein A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.9   2.1e-05     0.025       3      43 ..     363     417 ..     361     430 .. 0.92
   2 ?   -0.3   0.1      0.36   4.3e+02       3      28 ..     540     565 ..     538     616 .. 0.78

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 2.1e-05
                 EEE-SSHHHHHHHHHHHHTT--EEEE..............ES-GGGTT--SSSSE CS
        GIDA   3 iViGgGhAGceAAlaaarlGakvlLi..............thkldtiaelsCnps 43 
                  ViG+G  G++ A  aa  G +v+L+              +   +t+++++C p 
  KOO22399.1 363 LVIGAGSGGVASARRAAMYGKRVVLVergpewaeggervgAGYGGTCVNVGCVPK 417
                 7***************************999999999999999999999999985 PP

  == domain 2  score: -0.3 bits;  conditional E-value: 0.36
                 EEE-SSHHHHHHHHHHHHTT--EEEE CS
        GIDA   3 iViGgGhAGceAAlaaarlGakvlLi 28 
                  V+G G  G+e A  +   G++++++
  KOO22399.1 540 LVVGSGYIGVELAGILNAIGCDTTIL 565
                 79*******************99987 PP

>> 2-Hacid_dh_C  D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.5   0.2     0.069        82      40      70 ..     363     393 ..     350     405 .. 0.86
   2 ?    6.3   0.1    0.0046       5.5      36      63 ..     536     563 ..     523     570 .. 0.84

  Alignments for each domain:
  == domain 1  score: 2.5 bits;  conditional E-value: 0.069
                   EEES-SHHHHHHHHHHHHTT-EEEEESSSHH CS
  2-Hacid_dh_C  40 GiiGlGrIGqavakrlkafgmkviaydrskk 70 
                    +iG+G+ G a a+r++  g +v+ ++r ++
    KOO22399.1 363 LVIGAGSGGVASARRAAMYGKRVVLVERGPE 393
                   69**********************9998765 PP

  == domain 2  score: 6.3 bits;  conditional E-value: 0.0046
                   TSEEEEES-SHHHHHHHHHHHHTT-EEE CS
  2-Hacid_dh_C  36 gktvGiiGlGrIGqavakrlkafgmkvi 63 
                    ++  ++G G IG ++a +l+a+g++ +
    KOO22399.1 536 PQKALVVGSGYIGVELAGILNAIGCDTT 563
                   56889********************876 PP

>> 3HCDH_N  3-hydroxyacyl-CoA dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.6   0.4     0.011        13       4      37 ..     364     397 ..     362     405 .. 0.90
   2 ?    4.0   0.1     0.034        41       3      40 ..     540     577 ..     538     615 .. 0.82

  Alignments for each domain:
  == domain 1  score: 5.6 bits;  conditional E-value: 0.011
                 EE--SCCHHHHHHHHHHTT-EEEEE-S-HHHHHH CS
     3HCDH_N   4 viGaGtmGagiaavfasagleVvlvdiseealek 37 
                 viGaG  G   a  +a  g +Vvlv++ +e +e 
  KOO22399.1 364 VIGAGSGGVASARRAAMYGKRVVLVERGPEWAEG 397
                 9*************************98887765 PP

  == domain 2  score: 4.0 bits;  conditional E-value: 0.034
                 EEE--SCCHHHHHHHHHHTT-EEEEE-S-HHHHHHHHH CS
     3HCDH_N   3 aviGaGtmGagiaavfasagleVvlvdiseealekale 40 
                  v+G+G +G ++a ++ + g++++++ + +  l+++ +
  KOO22399.1 540 LVVGSGYIGVELAGILNAIGCDTTILCRGNGVLRRGFD 577
                 59*********************999888888877765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (855 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       411  (0.0229238); expected 358.6 (0.02)
Passed bias filter:                      386  (0.0215294); expected 358.6 (0.02)
Passed Vit filter:                        59  (0.00329076); expected 17.9 (0.001)
Passed Fwd filter:                        16  (0.000892409); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              15  [number of targets reported over threshold]
# CPU time: 0.72u 0.26s 00:00:00.98 Elapsed: 00:00:00.43
# Mc/sec: 5912.74
//
Query:       KOO22400.1  [L=104]
Description: ap-3 complex subunit sigma-2 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.7e-23   82.0   2.0    4.3e-23   81.8   2.0    1.1  1  Clat_adaptor_s  Clathrin adaptor complex small chain
  ------ inclusion threshold ------
      0.046   13.5   0.0      0.054   13.2   0.0    1.1  1  ADP_ribosyl_GH  ADP-ribosylglycohydrolase


Domain annotation for each model (and alignments):
>> Clat_adaptor_s  Clathrin adaptor complex small chain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   81.8   2.0   4.8e-27   4.3e-23      69     138 ..       1      70 [.       1      74 [. 0.95

  Alignments for each domain:
  == domain 1  score: 81.8 bits;  conditional E-value: 4.8e-27
                     EEEETTS-HHHHHHHHHHHHHHHHHHCTS-SHHHHHHCHHHHHHHHHCCEETTEES---HHHHHHCHHHH CS
  Clat_adaptor_s  69 vivdeqeneliilelihlfvesLdkyfgnVceldlvfnfekvylildEivsgGeiletskkevlkrvell 138
                     +++d  e+el il+li+++ve+Ld+ f+nVceld++fn ekv+ ++dE++ gG + ets++ +l+ +e  
      KOO22400.1   1 MVIDGSESELGILDLIQVLVETLDRHFKNVCELDIIFNCEKVHWVIDEMIVGGLVVETSPSAILEVIEAQ 70 
                     6899************************************************************998865 PP

>> ADP_ribosyl_GH  ADP-ribosylglycohydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.0     6e-06     0.054     135     183 ..      53     101 ..      47     104 .] 0.89

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 6e-06
                     HHHTSS-HHHHHHHHHHHHHTTB--HHHHHHHHHHHHHHHHHHTT--ST CS
  ADP_ribosyl_GH 135 gllyagdpeeaaelaeeaarlTHnhpeavagaaayaaliaaalrgksle 183
                     gl+   +p +++e++e++a+l H+  e  a+aa +a+ i+++++g +++
      KOO22400.1  53 GLVVETSPSAILEVIEAQAKLMHGQTELGAAAATAARQIDSVMKGLPPR 101
                     666667999***********************************98886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (104 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       564  (0.0314574); expected 358.6 (0.02)
Passed bias filter:                      493  (0.0274974); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.36u 0.23s 00:00:00.59 Elapsed: 00:00:00.37
# Mc/sec: 838.66
//
Query:       KOO22401.1  [L=184]
Description: methyltransferase family [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.2e-05   25.4   0.0    1.4e-05   25.2   0.0    1.1  1  Methyltransf_21  Methyltransferase FkbM domain
  ------ inclusion threshold ------
      0.094   12.5   0.5       0.15   11.8   0.5    1.3  1  Adeno_E3_CR2     Adenovirus E3 region protein CR2


Domain annotation for each model (and alignments):
>> Methyltransf_21  Methyltransferase FkbM domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.2   0.0   1.6e-09   1.4e-05      23     152 ..      15     142 ..       3     163 .. 0.64

  Alignments for each domain:
  == domain 1  score: 25.2 bits;  conditional E-value: 1.6e-09
  Methyltransf_21  23 ggevlaiEPvpnslpkfeklranlltlavgndvglyelivegksg....gkyfpfavgdtngfsts..svlggedaryievpvvtldsfleei. 109
                      ++  + +EP+ +   +f  lr+ +  +a ++     ++i + +++      +f+ a+++t++ s+          ++ i+v++v l+ f +++ 
       KOO22401.1  15 RA--YMFEPQEK---YFPTLRQLV--AAFAPR---LTHIPAVAWNedstVPFFLSANSETSSLSNRmaGR--FGSRKSINVTAVDLAAFVRRGa 96 
                      44..55***999...777777773..333333...44455555554333334444444444444443222..356677777777777**66665 PP

  Methyltransf_21 110 .kksrid..llkiDvEGaElevL...eGaqkglkrcqpnlivvEvhkfk 152
                         + ++  +lk+DvEG E + L     a+ +l++   + + +E+h  +
       KOO22401.1  97 sALPAPEllFLKLDVEGVEAQLLpflL-AEGALCK--LTHLLIEWHLNA 142
                      9999999878*********99995542.7777755..444558**9876 PP

>> Adeno_E3_CR2  Adenovirus E3 region protein CR2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.5   1.7e-05      0.15      23      34 ..     161     172 ..     160     176 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 1.7e-05
  Adeno_E3_CR2  23 mlyYaCcYrkhr 34 
                   mlyYaC+++ +r
    KOO22401.1 161 MLYYACRRKPPR 172
                   9********888 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (184 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       250  (0.0139439); expected 358.6 (0.02)
Passed bias filter:                      232  (0.0129399); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.38u 0.22s 00:00:00.60 Elapsed: 00:00:00.37
# Mc/sec: 1478.35
//
Query:       KOO22402.1  [L=390]
Description: proline iminopeptidase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.5e-27   95.7   0.1    8.4e-27   94.4   0.1    1.6  1  Abhydrolase_1  alpha/beta hydrolase fold
    5.1e-12   45.6   0.0    2.2e-06   27.1   0.0    2.3  2  Hydrolase_4    Serine aminopeptidase, S33
    1.1e-10   42.5   8.7      2e-10   41.7   8.7    1.4  1  Abhydrolase_6  Alpha/beta hydrolase family
     0.0067   16.5   0.0      0.015   15.4   0.0    1.6  1  Abhydrolase_4  TAP-like protein
  ------ inclusion threshold ------
      0.051   13.0   0.0       0.31   10.5   0.0    2.0  2  Peptidase_S9   Prolyl oligopeptidase family


Domain annotation for each model (and alignments):
>> Abhydrolase_1  alpha/beta hydrolase fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   94.4   0.1   2.3e-30   8.4e-27       1     252 [.      93     349 ..      93     353 .. 0.87

  Alignments for each domain:
  == domain 1  score: 94.4 bits;  conditional E-value: 2.3e-30
                    SEEEEE-STTTCGGGGTTGHHHHHHHHTTSEEEEEEETTSTTSSSTTTGB.CHHSHHHHHHHHHHHHHHCTTSSEEEEEETHHHHHHHHHHHHHGG CS
  Abhydrolase_1   1 pvlvilhGlpgssdvwaerglapaLakdgfdvillDlrGvgySspapacinddygtasvaddldrildalgddkltlvGhSmGGmialayaaeype 96 
                    ++++++hG+pg + + a+    +  + +++++il+D+rG+g+S+p  +   d+ +t+++ +d++r++++l +  + l G+S+G++++laya  +p 
     KOO22402.1  93 KPVLFVHGGPGAGCN-AK--QRRFHDPTRHRIILFDQRGCGRSTPDGCL--DENTTFDLVADMERLREKLSVSAWQLFGGSWGSTLSLAYAVSHPA 183
                    59*********5532.33..22222333********************9..********************************************* PP

                    GEEEEEEESE.....CSSCCHHHHHHHHHHHHHHCHHCHHHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHCHHHCCHHHHHHHCHHHHHHHHH CS
  Abhydrolase_1  97 rVkalvllga.....idpaaslieaqrqqaksfpdffdgyaadcarnpagplladelaaleqrhrlvdalkfpdkskrfpssgsdnasslatgalk 187
                    rV  l+l g      ++  + + +a +q  +    ++ +++ +++r  +   + +++   + ++        ++ + r++ ++ d   +l  + ++
     KOO22402.1 184 RVTELILRGIflvkqSELDFIYQSATPQLHPEAHAAMANFVSPEERHDLVSAYRKRVMSKDPEL--------ARAAARRWAEYEDAIAYLYPQPVE 271
                    **********999888888889999999999999999999998888666555555555555553........999********************* PP

                    HHHHHHHCCHHHHHHHHHC.............THHHHSEEEEEEETTCSSSCHHHHHHHHHCHTSEEEEEEETCSSSH CS
  Abhydrolase_1 188 sieqwpttdsaklllrlre.............lknvlaptlvisgtsDplvppkaledlaqllpkkrlvvisdagHla 252
                    ++e+   +++ +l  ++ +             ++ + +p+ +++g++D + p+ + ++la+  p+++l vi+d+gH a
     KOO22402.1 272 AWEGTGGEQRVHLHYMWARgffeydgwlldqlGTLARVPITIVHGRYDVVCPIASAYELAARVPHATLQVIPDSGHSA 349
                    **********9999888889********8888666666**************************************87 PP

>> Hydrolase_4  Serine aminopeptidase, S33
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.1   0.0   6.2e-10   2.2e-06      34     133 ..     121     212 ..      94     257 .. 0.70
   2 !   16.2   0.0   1.3e-06    0.0047     172     233 ..     288     348 ..     282     351 .. 0.84

  Alignments for each domain:
  == domain 1  score: 27.1 bits;  conditional E-value: 6.2e-10
  Hydrolase_4  34 vyalDhrGhGrsegkrg.hvpsfddyvdDlaafvekvkeehpelplfllGhSmGGliallyllrypdkvaglilsaPalkikakl.........kapp 121
                  ++ +D+rG Grs +  + + + + d+v+D++ + ek+      +   l+G S+G++++l+y+  +p++v+ lil + +l  +++l         +   
   KOO22402.1 121 IILFDQRGCGRSTPDGClDENTTFDLVADMERLREKLS----VSAWQLFGGSWGSTLSLAYAVSHPARVTELILRGIFLVKQSELdfiyqsatpQ--- 211
                  5689********85544488888899999987766666....556779****************************9998777754444433322... PP

  Hydrolase_4 122 llklllkllgkl 133
                             l
   KOO22402.1 212 -----------L 212
                  ...........2 PP

  == domain 2  score: 16.2 bits;  conditional E-value: 1.3e-06
  Hydrolase_4 172 lllelldamkrleeraakit.lPllllhGeaDkvvdpeasrelyerlgskdktlklypglyHe 233
                  +++++++   +l+++   +  +P+ ++hG  D v++ + + el++r++  + tl+++p   H+
   KOO22402.1 288 WARGFFEYDGWLLDQLGTLArVPITIVHGRYDVVCPIASAYELAARVP--HATLQVIPDSGHS 348
                  666666666677777766656***************************..79******99997 PP

>> Abhydrolase_6  Alpha/beta hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.7   8.7   5.5e-14     2e-10       1     211 [.      95     351 ..      95     369 .. 0.58

  Alignments for each domain:
  == domain 1  score: 41.7 bits;  conditional E-value: 5.5e-14
                    EEEE--GC.....GCHHHHHHHHCCTCEEEEE--TTSTS-GGCS.....--HHHCHHHHHHHCCTT..TTSE...EEEEETCHHHHHHHHHHCC.. CS
  Abhydrolase_6   1 vlllHGagssassWlvapLaallaagvhvlapDlpGhGrsdppp.....ldledladlaalldelaagggpv...vlvGHSlGGalalaaapla.. 86 
                    vl++HG+++ +    +++++   ++++  + +D +G+Grs+p+      ++++ +ad ++l ++l      v    l+G S+G +l+la   +a  
     KOO22402.1  95 VLFVHGGPGAGCNAKQRRFHDPTRHRI--ILFDQRGCGRSTPDGcldenTTFDLVADMERLREKLS-----VsawQLFGGSWGSTLSLA---YAvs 180
                    89***9776433333778888889999..9********66554477777666669999*******4.....4559**********9999...5555 PP

                    ..........EEEEES-.........----TTTS----TTHHHHHHTT-CCCCHCCHS-HSCCCCHHH....CCCCHCHCCCGHH........... CS
  Abhydrolase_6  87 ........lvvgvlldppp.......talpagllaaalelllallallrllawlsreplprlfladed....adaawrarlarla........... 152
                            +++g++l   +        a+p + + a ++++  + + +r++  ++  ++ r + +d++    a ++w+++ ++ a           
     KOO22402.1 181 hparvtelILRGIFLVKQSeldfiyqSATPQLHPEAHAAMANFVSPEERHDLVSA--YRKRVMSKDPElaraAARRWAEYEDAIAylypqpveawe 274
                    5789999866777777722232222222222222222222222222333333333..233444444444332246666666666644444444444 PP

                    ..................HHCCHHCHTTCCHHTT-TTGCEEECTT-CHHH.HCHHCCCH.STTEEETCE...SSS-HHH CS
  Abhydrolase_6 153 ..................allaglgllpaaawadlpvpllvlggeDplvp.rllerlla.qagarlpvvlpgaGHlphl 211
                                         +g+ l  +  +a++p ++ v+g  D ++p + + +l+a +++a+l +v+p++GH+ ++
     KOO22402.1 275 gtggeqrvhlhymwargfFEYDGWLLDQLGTLARVPITI-VHGRYDVVCPiASAYELAArVPHATL-QVIPDSGHSAWE 351
                    444444444443333322222233333455666666666.66888996663223366668899999.********8877 PP

>> Abhydrolase_4  TAP-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.0   4.3e-06     0.015      34      79 ..     308     354 ..     299     373 .. 0.85

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 4.3e-06
  Abhydrolase_4  34 aapvLllqnerDpaTPyegakklakalggavlvtvegeGHgala.ag 79 
                     +p+ ++ +++D ++P ++a +la + + a+l +  ++GH a++ ++
     KOO22402.1 308 RVPITIVHGRYDVVCPIASAYELAARVPHATLQVIPDSGHSAWEpGT 354
                    47999************************************998444 PP

>> Peptidase_S9  Prolyl oligopeptidase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.3   0.0      0.18   6.3e+02      43      86 ..     141     182 ..     136     187 .. 0.73
   2 ?   10.5   0.0   8.6e-05      0.31     116     199 ..     274     360 ..     257     370 .. 0.78

  Alignments for each domain:
  == domain 1  score: -0.3 bits;  conditional E-value: 0.18
                   HHHHHHHHHHHHHHHTTS--GGGEEEEEETHHHHHHHHHHHH-G CS
  Peptidase_S9  43 nefdDfiaaaealakegyvdserlaitGgSyGGyltgaalnqrp 86 
                   n+  D++a +e l ++  v++    ++GgS G +l++a + ++p
    KOO22402.1 141 NTTFDLVADMERLREKLSVSA--WQLFGGSWGSTLSLAYAVSHP 182
                   555666777777766665544..4568*********99998887 PP

  == domain 2  score: 10.5 bits;  conditional E-value: 8.6e-05
                   CCC--TTTCHHHHHHHHHH-CGGG--.......---EEEEEEETT-SSS-THHHHHHHHHHH--S-SEEEEEETTS-SSTTSSHHHHHHHH CS
  Peptidase_S9 116 mewgnpeeneegykelspyspldnvk.......aypplLlihGlaDdrvppaealklvaaLqkkgknvlllifpdegHgvgkprakveela 199
                   +++g +++ + +y+++     +d          a +p+ ++hG  D  +p+a+a++l+a++      + l++ pd+gH++ +p + ++ +a
    KOO22402.1 274 EGTGGEQRVHLHYMWARGFFEYDGWLldqlgtlARVPITIVHGRYDVVCPIASAYELAARVPH----ATLQVIPDSGHSAWEPGTTRALVA 360
                   55555555566666666666666666666677788999*******************998765....89*********9998888775554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (390 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       680  (0.0379274); expected 358.6 (0.02)
Passed bias filter:                      494  (0.0275531); expected 358.6 (0.02)
Passed Vit filter:                        63  (0.00351386); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.50u 0.27s 00:00:00.77 Elapsed: 00:00:00.40
# Mc/sec: 2923.35
//
Query:       KOO22403.1  [L=938]
Description: voltage dependent ion channel [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.4e-14   52.6   0.0     0.0026   17.5   0.0    3.5  3  EF-hand_6        EF-hand domain
    5.1e-13   47.6   0.0    0.00071   18.9   0.1    3.5  3  EF-hand_1        EF hand
      3e-10   40.4   0.0      4e-07   30.4   0.0    2.5  2  EF-hand_7        EF-hand domain pair
    3.2e-09   35.9   0.4       0.11   12.0   0.0    3.6  3  EF-hand_5        EF hand
    5.4e-09   36.1   0.3    4.4e-07   30.0   0.1    2.9  2  Kelch_3          Galactose oxidase, central domain
    9.1e-07   28.7   0.1      0.034   14.2   0.0    3.4  3  Kelch_5          Kelch motif
    2.7e-05   23.9   0.2      0.043   13.7   0.0    3.4  3  EF-hand_8        EF-hand domain pair
    0.00014   21.8   1.9      0.065   13.2   0.0    3.4  3  Kelch_4          Galactose oxidase, central domain
     0.0034   17.6   0.0        5.2    7.5   0.0    2.7  2  Kelch_6          Kelch motif
  ------ inclusion threshold ------
      0.038   14.0   0.0         16    5.7   0.0    2.8  2  Kelch_2          Kelch motif
       0.12   12.4   0.3       0.87    9.6   0.1    2.6  2  Frankia_peptide  Ribosomally synthesized peptide prototyped b
       0.12   12.1   0.8       0.25   11.0   0.8    1.5  1  Sigma54_activat  Sigma-54 interaction domain
       0.27   11.6   1.0         83    3.6   0.0    3.5  4  EF-hand_9        EF-hand domain


Domain annotation for each model (and alignments):
>> EF-hand_6  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.5   0.0   3.7e-05     0.051       4      28 ..     202     226 ..     201     233 .. 0.90
   2 !   17.5   0.0   1.9e-06    0.0026       3      30 ..     576     602 ..     574     603 .. 0.88
   3 !   17.3   0.0   2.3e-06    0.0032       2      28 ..     611     637 ..     610     647 .. 0.88

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 3.7e-05
   EF-hand_6   4 eaFklfDkdgdGkidaeElrkalrk 28 
                 ++F + D++ dG ++ eE +  lr+
  KOO22403.1 202 AIFAACDTNADGVLTLEEAQIGLRT 226
                 68******************99996 PP

  == domain 2  score: 17.5 bits;  conditional E-value: 1.9e-06
   EF-hand_6   3 reaFklfDkdgdGkidaeElrkalrkal 30 
                  ++F+++D+dgdG++ + Elrka   +l
  KOO22403.1 576 LDLFRQWDVDGDGTVRKPELRKAVA-LL 602
                 689*******************987.55 PP

  == domain 3  score: 17.3 bits;  conditional E-value: 2.3e-06
   EF-hand_6   2 lreaFklfDkdgdGkidaeElrkalrk 28 
                 ++++F+ fD+dg G i ++El++++r+
  KOO22403.1 611 VDKLFESFDRDGGGAIEYKELQRVIRR 637
                 6799********************995 PP

>> EF-hand_1  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.6   0.0   0.00025      0.34       3      26 ..     201     224 ..     201     227 .. 0.85
   2 !   14.1   0.0   1.8e-05     0.025       3      27 ..     576     600 ..     574     602 .. 0.89
   3 !   18.9   0.1   5.2e-07   0.00071       1      28 [.     610     637 ..     610     638 .. 0.94

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00025
                 HHHHHHHTTTSSSEEEHHHHHHHH CS
   EF-hand_1   3 keiFrefDkDgdGkIdfeEfkell 26 
                 + iF+  D++ dG +++eE +  l
  KOO22403.1 201 DAIFAACDTNADGVLTLEEAQIGL 224
                 679****************76665 PP

  == domain 2  score: 14.1 bits;  conditional E-value: 1.8e-05
                 HHHHHHHTTTSSSEEEHHHHHHHHH CS
   EF-hand_1   3 keiFrefDkDgdGkIdfeEfkellk 27 
                  ++Fr  D+DgdG++ + E++++++
  KOO22403.1 576 LDLFRQWDVDGDGTVRKPELRKAVA 600
                 689******************9986 PP

  == domain 3  score: 18.9 bits;  conditional E-value: 5.2e-07
                 HHHHHHHHHTTTSSSEEEHHHHHHHHHH CS
   EF-hand_1   1 elkeiFrefDkDgdGkIdfeEfkellkk 28 
                 e++++F+ fD+Dg G I+++E+++++++
  KOO22403.1 610 EVDKLFESFDRDGGGAIEYKELQRVIRR 637
                 79**********************9986 PP

>> EF-hand_7  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.5   0.0    0.0042       5.8      48      65 ..     202     219 ..     187     270 .. 0.74
   2 !   30.4   0.0   2.9e-10     4e-07       4      70 ..     575     635 ..     573     636 .. 0.93

  Alignments for each domain:
  == domain 1  score: 7.5 bits;  conditional E-value: 0.0042
   EF-hand_7  48 llfkefDtdkdGvisfdE 65 
                 ++f   Dt+ dGv++++E
  KOO22403.1 202 AIFAACDTNADGVLTLEE 219
                 566666666666666666 PP

  == domain 2  score: 30.4 bits;  conditional E-value: 2.9e-10
   EF-hand_7   4 lkeaFkelDtdgdgyldkeellrllrkifqgagegsklsdeelellfkefDtdkdGvisfdEFlkly 70 
                 + + F++ D+dgdg ++k el++++         g +++  e+++lf+ fD d+ G i + E+++ +
  KOO22403.1 575 VLDLFRQWDVDGDGTVRKPELRKAVA------LLGYDVPNVEVDKLFESFDRDGGGAIEYKELQRVI 635
                 5679*********************9......99****************************99875 PP

>> EF-hand_5  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.3   0.0    0.0012       1.6       3      20 ..     202     219 ..     200     223 .. 0.89
   2 !   12.0   0.0     8e-05      0.11       3      23 ..     577     597 ..     575     600 .. 0.89
   3 !   11.5   0.1   0.00012      0.16       2      24 ..     612     634 ..     611     635 .. 0.92

  Alignments for each domain:
  == domain 1  score: 8.3 bits;  conditional E-value: 0.0012
                 HHHHHH-SS-SSCE-HHH CS
   EF-hand_5   3 dtFqaiDlNgDGkIskeE 20 
                 + F a D+N DG ++ eE
  KOO22403.1 202 AIFAACDTNADGVLTLEE 219
                 479999***********9 PP

  == domain 2  score: 12.0 bits;  conditional E-value: 8e-05
                 HHHHHH-SS-SSCE-HHHHHH CS
   EF-hand_5   3 dtFqaiDlNgDGkIskeELkt 23 
                 d+F++ D++gDG++ k EL++
  KOO22403.1 577 DLFRQWDVDGDGTVRKPELRK 597
                 78************9999987 PP

  == domain 3  score: 11.5 bits;  conditional E-value: 0.00012
                 HHHHHHH-SS-SSCE-HHHHHHH CS
   EF-hand_5   2 kdtFqaiDlNgDGkIskeELktl 24 
                 +++F+ +D +g G I   EL+++
  KOO22403.1 612 DKLFESFDRDGGGAIEYKELQRV 634
                 579******************97 PP

>> Kelch_3  Galactose oxidase, central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.0   0.1   3.2e-10   4.4e-07       4      48 ..       1      46 [.       1      47 [. 0.92
   2 ?    3.1   0.0      0.09   1.2e+02       2      18 ..     106     121 ..     105     124 .. 0.76

  Alignments for each domain:
  == domain 1  score: 30.0 bits;  conditional E-value: 3.2e-10
     Kelch_3  4 lyifGGlgddgqdrlndvyvydldtntWaei...aslppaRaghaata 48
                +++fGG++  +  +  d++++ +++ +W+++   +  p+aR+gh+++a
  KOO22403.1  1 MFLFGGNT--TKASFDDLWEFRVASASWRKVrarGVRPSARVGHTLCA 46
                89******..99*******************955556**********8 PP

  == domain 2  score: 3.1 bits;  conditional E-value: 0.09
     Kelch_3   2 drlyifGGlgddgqdrl 18 
                 +rl++fGGl+ d++  l
  KOO22403.1 106 GRLLLFGGLD-DRNRML 121
                 589*******.677655 PP

>> Kelch_5  Kelch motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.7   0.0   0.00031      0.42      17      41 ..       1      23 [.       1      24 [. 0.90
   2 ?   -2.1   0.1         3   4.2e+03       2      14 ..      36      48 ..      36      50 .. 0.89
   3 !   14.2   0.0   2.4e-05     0.034       5      33 ..      96     123 ..      94     124 .. 0.87

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00031
     Kelch_5 17 iYvyGGkvgrdgsvsddvyvLdlps 41
                ++++GG +  ++ ++dd++ + + s
  KOO22403.1  1 MFLFGGNT--TKASFDDLWEFRVAS 23
                69******..5********999876 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 3
     Kelch_5  2 PppRaghcavtvs 14
                P++R gh  ++v+
  KOO22403.1 36 PSARVGHTLCAVG 48
                99******99986 PP

  == domain 3  score: 14.2 bits;  conditional E-value: 2.4e-05
     Kelch_5   5 RaghcavtvsekiYvyGGkvgrdgsvsdd 33 
                 R+ghca+ + + ++++GG +  ++   dd
  KOO22403.1  96 RTGHCAALHRGRLLLFGGLD-DRNRMLDD 123
                 9******************9.57777766 PP

>> EF-hand_8  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.6   0.0     0.042        58      29      47 ..     201     219 ..     200     219 .. 0.93
   2 ?    3.2   0.0     0.057        79      30      47 ..     577     594 ..     568     595 .. 0.85
   3 !   13.7   0.0   3.1e-05     0.043       9      47 ..     594     630 ..     592     634 .. 0.96

  Alignments for each domain:
  == domain 1  score: 3.6 bits;  conditional E-value: 0.042
   EF-hand_8  29 dilfrefDtdgdGkisfeE 47 
                 d++f + Dt+ dG++++eE
  KOO22403.1 201 DAIFAACDTNADGVLTLEE 219
                 689999***********98 PP

  == domain 2  score: 3.2 bits;  conditional E-value: 0.057
   EF-hand_8  30 ilfrefDtdgdGkisfeE 47 
                 +lfr  D dgdG++ + E
  KOO22403.1 577 DLFRQWDVDGDGTVRKPE 594
                 79***********97766 PP

  == domain 3  score: 13.7 bits;  conditional E-value: 3.1e-05
   EF-hand_8   9 elrrilrilglkkglseeevdilfrefDtdgdGkisfeE 47 
                 elr+++++lg+   + + evd lf  fD+dg G+i ++E
  KOO22403.1 594 ELRKAVALLGYD--VPNVEVDKLFESFDRDGGGAIEYKE 630
                 89**********..**********************999 PP

>> Kelch_4  Galactose oxidase, central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.2   0.0   4.7e-05     0.065      16      44 ..       2      29 ..       1      37 [. 0.89
   2 ?   -0.1   0.1      0.69   9.4e+02       1      12 [.      38      49 ..      38      51 .. 0.87
   3 ?    5.4   0.0     0.013        18       2      31 ..      96     124 ..      96     124 .. 0.86

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 4.7e-05
     Kelch_4 16 ylfGGrgedgtllndlylldlstntWrrl 44
                +lfGG +++ ++++dl+ + +++ +Wr++
  KOO22403.1  2 FLFGGNTTK-ASFDDLWEFRVASASWRKV 29
                79*******.7****************98 PP

  == domain 2  score: -0.1 bits;  conditional E-value: 0.69
     Kelch_4  1 pRaghsatsipd 12
                +R+gh+++++++
  KOO22403.1 38 ARVGHTLCAVGS 49
                7********975 PP

  == domain 3  score: 5.4 bits;  conditional E-value: 0.013
     Kelch_4   2 RaghsatsipdgtiylfGGrgedgtllndl 31 
                 R gh+a    +g++ lfGG  + +  l+dl
  KOO22403.1  96 RTGHCAALH-RGRLLLFGGLDDRNRMLDDL 124
                 778888888.6*********9988888886 PP

>> Kelch_6  Kelch motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.2   0.0    0.0048       6.6      15      43 ..       2      29 ..       1      32 [. 0.93
   2 !    7.5   0.0    0.0038       5.2       2      22 ..      96     116 ..      95     122 .. 0.89

  Alignments for each domain:
  == domain 1  score: 7.2 bits;  conditional E-value: 0.0048
     Kelch_6 15 YifGGytdsspylnkvwvydpetksWeql 43
                ++fGG+t    +++++w +++ + sW+++
  KOO22403.1  2 FLFGGNTT-KASFDDLWEFRVASASWRKV 29
                68******.9****************987 PP

  == domain 2  score: 7.5 bits;  conditional E-value: 0.0038
     Kelch_6   2 raghslvsvggkiYifGGytd 22 
                 r+gh ++++ g++ +fGG++d
  KOO22403.1  96 RTGHCAALHRGRLLLFGGLDD 116
                 89*****************98 PP

>> Kelch_2  Kelch motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.2   0.0     0.017        23      15      45 ..       2      29 ..       1      31 [. 0.93
   2 ?    5.7   0.0     0.012        16       2      27 ..      96     119 ..      95     127 .. 0.80

  Alignments for each domain:
  == domain 1  score: 5.2 bits;  conditional E-value: 0.017
     Kelch_2 15 yvvGGahtdnpnlsssdvhvldlekhvWeev 45
                +++GG     +  s++d++ ++  + +W++v
  KOO22403.1  2 FLFGGN---TTKASFDDLWEFRVASASWRKV 29
                89****...*******************987 PP

  == domain 2  score: 5.7 bits;  conditional E-value: 0.012
     Kelch_2   2 rgghsssvpggkiyvvGGahtdnpnl 27 
                 r gh ++  +g+++++GG   d+ n+
  KOO22403.1  96 RTGHCAALHRGRLLLFGGL--DDRNR 119
                 6789999***********9..55554 PP

>> Frankia_peptide  Ribosomally synthesized peptide prototyped by Frankia Franean1_4349.
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   0.1   0.00063      0.87      20      49 ..     236     264 ..     234     276 .. 0.84
   2 ?   -2.4   0.0       3.5   4.9e+03      24      42 ..     596     614 ..     594     620 .. 0.82

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 0.00063
  Frankia_peptide  20 ladpeeavkeagYdltpeElqalekadads 49 
                      lad++  v eag++lt+eE+q  e++++++
       KOO22403.1 236 LADLAPIV-EAGFQLTSEEMQISEEMQTSE 264
                      67777777.9***********999888876 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 3.5
  Frankia_peptide  24 eeavkeagYdltpeElqal 42 
                      ++av+  gYd+   E+++l
       KOO22403.1 596 RKAVALLGYDVPNVEVDKL 614
                      6777788*****9999998 PP

>> Sigma54_activat  Sigma-54 interaction domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.8   0.00018      0.25      58      96 ..     739     777 ..     716     779 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00018
                      TTTS-TTCHHHHHHEBSSSSSTTTSS-BEHHHHHTTTSE CS
  Sigma54_activat  58 caaipeelleseLFGhekGaFtGAekekkGlfekadgGt 96 
                       a++pe ll+s+ F +e+Ga  GA+++ +G+  +a+ G 
       KOO22403.1 739 GAKLPEALLTSTAFDTEEGAVVGATSNAAGASAAASTGA 777
                      4789****************************9999986 PP

>> EF-hand_9  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.6   0.0     0.063        87       1      18 [.     201     218 ..     201     233 .. 0.86
   2 ?   -2.6   0.0       5.1   7.1e+03      32      51 ..     381     399 ..     379     409 .. 0.78
   3 ?    3.6   0.0      0.06        83       4      64 ..     579     637 ..     577     639 .. 0.74
   4 ?   -0.2   0.1      0.93   1.3e+03      27      45 ..     675     693 ..     669     701 .. 0.81

  Alignments for each domain:
  == domain 1  score: 3.6 bits;  conditional E-value: 0.063
   EF-hand_9   1 etvFevcDtqktGrVpvs 18 
                 +++F +cDt+  G+ ++ 
  KOO22403.1 201 DAIFAACDTNADGVLTLE 218
                 689**********98876 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 5.1
   EF-hand_9  32 peeseLeelakelDPdgeda 51 
                 pee  ++  +  +DP+++ a
  KOO22403.1 381 PEEYTVDADSLRMDPEHK-A 399
                 7788888888899***99.4 PP

  == domain 3  score: 3.6 bits;  conditional E-value: 0.06
   EF-hand_9   4 FevcDtqktGrVpvsrlidyLravtaqdpeeseLeelakelDPdgedasvdldtflrvmre 64 
                 F+  D++  G+V+  +l +     +  d +++e+++l +++D dg  + ++    +rv+r+
  KOO22403.1 579 FRQWDVDGDGTVRKPELRKAVALLGY-DVPNVEVDKLFESFDRDGG-GAIEYKELQRVIRR 637
                 66666666666666666655555555.7778899999999999999.99999999999986 PP

  == domain 4  score: -0.2 bits;  conditional E-value: 0.93
   EF-hand_9  27 vtaqdpeeseLeelakelD 45 
                  ++ dp++ +L+e+a+  D
  KOO22403.1 675 LASADPSDEALDEFAAAED 693
                 67789********998776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (938 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       514  (0.0286686); expected 358.6 (0.02)
Passed bias filter:                      259  (0.0144459); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                        14  (0.000780858); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 0.66u 0.24s 00:00:00.90 Elapsed: 00:00:00.41
# Mc/sec: 6895.54
//
Query:       KOO22404.1  [L=209]
Description: fk506 binding protein 2 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.4e-19   70.2   0.0    2.7e-19   69.3   0.0    1.4  1  FKBP_C    FKBP-type peptidyl-prolyl cis-trans isomerase
    0.00035   20.4   0.0    0.00073   19.3   0.0    1.5  1  PDZ_6     PDZ domain


Domain annotation for each model (and alignments):
>> FKBP_C  FKBP-type peptidyl-prolyl cis-trans isomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.3   0.0     3e-23   2.7e-19       6      94 .]      84     174 ..      80     174 .. 0.94

  Alignments for each domain:
  == domain 1  score: 69.3 bits;  conditional E-value: 3e-23
                 -TTCEEEEEEEEEET.TSSEEEEHCC..HTSEEEEETTSSSSCHHHHHHHTTSBTT-EEEEEEEGGGTTTTTTBCTTTB.TTSEEEEEEEEE CS
      FKBP_C   6 kegdtVtvhykgkle.dgkvfdssrs..rakplefkvGsgqvikGfeealegmkvGekrtltippelaYgekglaggvippnatLvFeveLl 94 
                 + +d+V++++ g+l+  g +fdss +   ++p+ f++G+g+v++G++ ++ +m+ Ge+r l +p+ l++g +g + + +pp+a L + v L+
  KOO22404.1  84 RASDVVEIEFSGRLAsSGLEFDSS-EmrSGRPFAFTLGNGDVVRGLDLGTLEMCIGEERLLLVPSRLGFGTRGSKVFGVPPDAPLDYRVRLV 174
                 5689***********99*******.3369*********************************************9999***********985 PP

>> PDZ_6  PDZ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.3   0.0   8.2e-08   0.00073      21      54 ..       6      38 ..       3      39 .. 0.93

  Alignments for each domain:
  == domain 1  score: 19.3 bits;  conditional E-value: 8.2e-08
       PDZ_6 21 iilsvNGqpveglsladvaallrgsagesvvlvv 54
                +i+ v+G+++ gls a+v+al++ sa+++v+++v
  KOO22404.1  6 YIVNVDGRSTAGLSAAQVQALIQ-SAPRPVTIRV 38
                7999*******************.9999999987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (209 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       439  (0.0244855); expected 358.6 (0.02)
Passed bias filter:                      396  (0.0220871); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.40u 0.25s 00:00:00.65 Elapsed: 00:00:00.39
# Mc/sec: 1591.63
//
Query:       KOO22405.1  [L=419]
Description: sperm-associated antigen 17, partial [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.6e-09   37.9   0.1      3e-09   36.9   0.1    1.5  1  PapD-like  Flagellar-associated PapD-like


Domain annotation for each model (and alignments):
>> PapD-like  Flagellar-associated PapD-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.9   0.1   1.7e-13     3e-09       4     101 ..     260     352 ..     257     353 .. 0.92

  Alignments for each domain:
  == domain 1  score: 36.9 bits;  conditional E-value: 1.7e-13
   PapD-like   4 levsPakveFGkvlpgnryvltvellnvstvpcRyrvrlpavvkkllsveYkrqFvaPGltvklkvelsgaqplGemdselsvvheggivevevraet 101
                 +e+ Pa+ +FG    g+ y  +++l+nvs    R+ +++ +      +  + ++ va G++  l+ve++    + e++  l++v+e++ + + v+a +
  KOO22405.1 260 FELLPARADFGVLAVGRVYRFPLKLVNVSNLSQRFSIKQNPRA----RLVFAPGAVAAGMALPLEVEVC-EMAPSELREVLTIVTEREEISLSVSATV 352
                 899***********************************99944....45678*****************.777889******************9987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (419 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       663  (0.0369792); expected 358.6 (0.02)
Passed bias filter:                      448  (0.0249875); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.53u 0.24s 00:00:00.77 Elapsed: 00:00:00.42
# Mc/sec: 3029.46
//
Query:       KOO22406.1  [L=170]
Description: hypothetical protein Ctob_005114 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
  ------ inclusion threshold ------
       0.13   12.2   0.0       0.17   11.9   0.0    1.3  1  GP24_25        Tail assembly gene products 24 & 25
        0.2   11.2   0.0       0.27   10.8   0.0    1.2  1  Peptidase_S41  Peptidase family S41


Domain annotation for each model (and alignments):
>> GP24_25  Tail assembly gene products 24 & 25
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   1.9e-05      0.17      47      90 ..      89     131 ..      46     158 .. 0.72

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 1.9e-05
     GP24_25  47 vvellkefeeiaeleeddedeLvdeysdelekviakvfrliatd 90 
                 ++  l+++++ +    dd+d+  d+ s+++e  +ak+f  +a  
  KOO22406.1  89 AKAELEKLKNGT-TAYDDDDDDHDDPSHQVESTLAKAFAQLARV 131
                 444556665555.455666666789*************988864 PP

>> Peptidase_S41  Peptidase family S41
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0     3e-05      0.27      14      57 ..     117     160 ..     100     166 .. 0.89

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 3e-05
                    HHHHHHHHHHHHHHTTSSEEEEE-TTB-EBEHHHHHHHHHCCSS CS
  Peptidase_S41  14 tkeelakalkelkkknvkglilDlRnNgGGlldeavelaslfld 57 
                     ++ laka+++l++ + + li+D+  N+G   +++++l+ l+++
     KOO22406.1 117 VESTLAKAFAQLARVQRRVLIIDVGANNGLWAKQMLKLTTLITT 160
                    67899************************999999999888876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (170 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       687  (0.0383178); expected 358.6 (0.02)
Passed bias filter:                      393  (0.0219198); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.40u 0.24s 00:00:00.64 Elapsed: 00:00:00.40
# Mc/sec: 1288.57
//
Query:       KOO22407.1  [L=495]
Description: hypothetical protein Ctob_005108 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
     0.0072   15.8  17.0      0.019   14.5  17.0    1.7  1  PT            PT repeat
  ------ inclusion threshold ------
        5.2    6.6   8.1        8.4    5.9   8.1    1.4  1  DUF572        Family of unknown function (DUF572)


Domain annotation for each model (and alignments):
>> PT  PT repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.5  17.0   2.1e-06     0.019       5      23 ..      16      34 ..      15      44 .. 0.52

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 2.1e-06
          PT  5 qPtaqPTvqPTgqPtaqPT 23
                qPt qPT+qPT qPt  P 
  KOO22407.1 16 QPTQQPTQQPTQQPTVTPA 34
                4555555555555555444 PP

>> DUF572  Family of unknown function (DUF572)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.9   8.1   0.00093       8.4     187     307 ..     278     384 ..     182     424 .. 0.51

  Alignments for each domain:
  == domain 1  score: 5.9 bits;  conditional E-value: 0.00093
      DUF572 187 deealkekislekikllpedeedekkaklle.gkte......slfasseesaksakk.kpt.kkesskekkkeslekklskltkkkadsslvvrKkkke 276
                 ++ea+++++                     +    +      ++  +++ +ak+a++ k++ + +++++ k++ + k+ ++ + +++++     K +++
  KOO22407.1 278 KDEAVRKAA---------------------SdVAADeasaatEI--KAAAEAKAAAQgKAAaEAKAAAQGKAAAEAKAAAQGKAAAEAKAAAQGKAPAA 353
                 222222222.....................11111111111111..11111111111111111111111111111222222212222233333333333 PP

      DUF572 277 eekskeskekteeeskeseeeskkeeetsae 307
                 e k++++ +++++e+k s++ ++++e++ a 
  KOO22407.1 354 EAKAAAQGKAASAEAKASAQGKAAAEAKAAA 384
                 3333333333333322222222222222211 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (495 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1672  (0.0932567); expected 358.6 (0.02)
Passed bias filter:                      458  (0.0255452); expected 358.6 (0.02)
Passed Vit filter:                       118  (0.00658152); expected 17.9 (0.001)
Passed Fwd filter:                        23  (0.00128284); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.79u 0.34s 00:00:01.13 Elapsed: 00:00:00.47
# Mc/sec: 3144.70
//
Query:       KOO22408.1  [L=324]
Description: tho complex subunit 3-like protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    4.6e-31  106.4   9.4    4.3e-06   27.4   0.0    6.7  7  WD40           WD domain, G-beta repeat
    7.9e-26   90.2   2.6    3.8e-05   23.9   0.1    5.6  5  ANAPC4_WD40    Anaphase-promoting complex subunit 4 WD40 doma
    8.7e-11   42.1   0.0     0.0003   20.7   0.0    2.9  3  eIF2A          Eukaryotic translation initiation factor eIF2A
    4.6e-06   26.2   0.0     0.0052   16.2   0.0    3.1  3  WD40_like      WD40-like domain
    3.3e-05   22.6   0.0       0.15   10.6   0.1    2.2  2  Cytochrom_D1   Cytochrome D1 heme domain
    0.00088   19.2   0.1      0.018   15.0   0.0    3.1  4  PD40           WD40-like Beta Propeller Repeat
      0.003   16.3   2.0      0.079   11.6   0.1    2.6  3  Nup160         Nucleoporin Nup120/160
  ------ inclusion threshold ------
      0.012   13.7   0.5       0.36    8.8   0.3    2.9  2  IKI3           IKI3 family
      0.017   14.2   0.0       0.13   11.2   0.0    2.3  3  Coatomer_WDAD  Coatomer WD associated region


Domain annotation for each model (and alignments):
>> WD40  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.6   0.3   3.8e-09   7.5e-06       5      38 .]      18      52 ..      14      52 .. 0.91
   2 !   22.4   0.1   8.1e-08   0.00016       6      38 .]      62      97 ..      57      97 .. 0.83
   3 !    9.8   0.0   0.00078       1.6      15      34 ..     115     134 ..     100     137 .. 0.78
   4 ?   -2.5   0.0       6.1   1.2e+04      24      31 ..     167     174 ..     146     180 .. 0.49
   5 !   27.4   0.0   2.2e-09   4.3e-06       2      38 .]     192     229 ..     191     229 .. 0.95
   6 !   11.8   0.0   0.00017      0.35       3      31 ..     235     264 ..     233     267 .. 0.83
   7 !    8.4   0.0    0.0022       4.3       3      37 ..     277     319 ..     275     319 .. 0.72

  Alignments for each domain:
  == domain 1  score: 26.6 bits;  conditional E-value: 3.8e-09
                EEEESSSS.EEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40  5 rtltGHss.vtslafspdgawlasGsdDgtvriWd 38
                +++ +H+  v+s+a+s  g+ lasGs D++vr+W+
  KOO22408.1 18 KEYVAHKRkVHSVAWSCGGQKLASGSVDQSVRVWS 52
                67899*666*************************5 PP

  == domain 2  score: 22.4 bits;  conditional E-value: 8.1e-08
                E.EESS.SSEEEEEEETTSSEEE.EEETTSEEEEEE CS
        WD40  6 t.ltGH.ssvtslafspdgawla.sGsdDgtvriWd 38
                t ltGH +sv  l+++p ++ ++ ++s D+tvriWd
  KOO22408.1 62 TeLTGHqDSVDQLRWDPLNPEVLgTASGDRTVRIWD 97
                449***888****9*******9864455*******9 PP

  == domain 3  score: 9.8 bits;  conditional E-value: 0.00078
                 EEEEETTSSEEEEEETTSEE CS
        WD40  15 slafspdgawlasGsdDgtv 34 
                  +++spdg+ +a G++D ++
  KOO22408.1 115 NIRWSPDGQHVAVGDKDDNI 134
                 467***********998877 PP

  == domain 4  score: -2.5 bits;  conditional E-value: 6.1
                 E..EEEEETT CS
        WD40  24 w..lasGsdD 31 
                 +  l++ +  
  KOO22408.1 167 FffLTT-G-S 174
                 232333.3.4 PP

  == domain 5  score: 27.4 bits;  conditional E-value: 2.2e-09
                 EEEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40   2 qclrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 
                 q++++l +H  + ++++fsp g +la G+ D  v iWd
  KOO22408.1 192 QPVHSLQAHtANCYCIDFSPKGEYLAVGGADAMVTIWD 229
                 89*******7779************************9 PP

  == domain 6  score: 11.8 bits;  conditional E-value: 0.00017
                 EEEEEESS.SSEEEEEEETTSSEEEEEETT CS
        WD40   3 clrtltGH.ssvtslafspdgawlasGsdD 31 
                 clrt+t    +v+ l+fs d+++lasGs+D
  KOO22408.1 235 CLRTCTRFeWPVRTLSFSCDSRFLASGSED 264
                 77887755345*****************98 PP

  == domain 7  score: 8.4 bits;  conditional E-value: 0.0022
                 EEEEEESSSSEEEEEEETTSSEEE.E.......EETTSEEEEE CS
        WD40   3 clrtltGHssvtslafspdgawla.s.......GsdDgtvriW 37 
                 ++++l+     +s+a++p+  +la +       G dDg++ri+
  KOO22408.1 277 QVHKLSCSAAMNSVAWHPSRLLLAyAaddkdrvGRDDGSLRIF 319
                 566666665589**********97663555555556***9995 PP

>> ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.3   6.6e-06     0.013      35      89 ..      21      76 ..      10      77 .. 0.81
   2 !   13.3   0.0   3.9e-05     0.077      36      80 ..      66     111 ..      60     116 .. 0.87
   3 !   23.9   0.1   1.9e-08   3.8e-05      43      90 ..     115     160 ..     109     162 .. 0.94
   4 !   13.9   0.0   2.5e-05      0.05      13      75 ..     171     238 ..     166     243 .. 0.80
   5 !   23.3   0.0     3e-08     6e-05      40      90 ..     245     293 ..     234     295 .. 0.93

  Alignments for each domain:
  == domain 1  score: 15.8 bits;  conditional E-value: 6.6e-06
  ANAPC4_WD40 35 dkedsevrsLaWkpdgklLavaysdgevrllda.esgkvvhslsvksekavtclgW 89
                  +++++v+s+aW+  g+ La +  d +vr+ +  e+g   h+  ++++++v  l W
   KOO22408.1 21 VAHKRKVHSVAWSCGGQKLASGSVDQSVRVWSLhETGSATHTELTGHQDSVDQLRW 76
                 57899**************************9825667777666666668999999 PP

  == domain 2  score: 13.3 bits;  conditional E-value: 3.9e-05
  ANAPC4_WD40  36 kedsevrsLaWkp.dgklLavaysdgevrlldaesgkvvhslsvks 80 
                  +++ +v +L+W p + ++L  a  d +vr+ d  + k vh++++  
   KOO22408.1  66 GHQDSVDQLRWDPlNPEVLGTASGDRTVRIWDTRTNKQVHAIETRG 111
                  67889*******95679************************99865 PP

  == domain 3  score: 23.9 bits;  conditional E-value: 1.9e-08
  ANAPC4_WD40  43 sLaWkpdgklLavaysdgevrlldaesgkvvhslsvksekavtclgWg 90 
                  +++W+pdg+  av+ +d ++ ++++ + k +++++ +se  v+ + W+
   KOO22408.1 115 NIRWSPDGQHVAVGDKDDNIAIIEMRKCKALKNIKFQSE--VNEMAWE 160
                  589**********************************99..******7 PP

  == domain 4  score: 13.9 bits;  conditional E-value: 2.5e-05
  ANAPC4_WD40  13 atedgellvfRlng.......qrvwtleedkedsevrsLaWkpdgklLavaysdgevrlldaesgkvvhs 75 
                   t +g++++fR          q v +l  +++  +  ++ ++p+g+ Lav+ +d  v + d+++  ++++
   KOO22408.1 171 TTGSGSVEIFRYADmlaqeqaQPVHSL--QAHTANCYCIDFSPKGEYLAVGGADAMVTIWDVHELVCLRT 238
                  566777777777554666666777777..78899999************************998766655 PP

  == domain 5  score: 23.3 bits;  conditional E-value: 3e-08
  ANAPC4_WD40  40 evrsLaWkpdgklLavaysdgevrlldaesgkvvhslsvksekavtclgWg 90 
                   vr L+++ d ++La + +d  v + d+++g+ vh+ls+++   ++++ W 
   KOO22408.1 245 PVRTLSFSCDSRFLASGSEDLYVDIADVSTGEQVHKLSCSAA--MNSVAWH 293
                  69**************************************98..8999995 PP

>> eIF2A  Eukaryotic translation initiation factor eIF2A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   0.0     2e-06    0.0039      58     159 ..      23     126 ..      13     128 .. 0.81
   2 !   20.7   0.0   1.5e-07    0.0003      53     144 ..     145     242 ..     130     262 .. 0.75
   3 ?    0.6   0.0      0.22   4.5e+02      84     113 ..     266     297 ..     246     307 .. 0.53

  Alignments for each domain:
  == domain 1  score: 17.1 bits;  conditional E-value: 2e-06
                 SSS.EEEEEE-TTSS-EEEEESSSSCEEEEEECS.....CEEEEEEEEES--EEEE-TTSSEEEEE-TTSSS-EEEEEETTTTEEEEEEE-T.T--EEE CS
       eIF2A  58 kegpihdvaWspkskefaviyGkmpakvslfdlk.....vkviskleeqkrNtiffspkgklvllaGfgnlaGeleiwdvkkkkkiakaeaa.natlve 150
                 ++ ++h vaWs  ++++a   G ++++v +++l+      +   + ++++  ++ ++p +  vl    g+   ++ iwd+ + k+++ +e   +   + 
  KOO22408.1  23 HKRKVHSVAWSCGGQKLA--SGSVDQSVRVWSLHetgsaTHTELTGHQDSVDQLRWDPLNPEVLGTASGDR--TVRIWDTRTNKQVHAIETRgENINIR 117
                 45569**********987..8*******9999965644334444456777899**********99988988..9*******8888888876527889** PP

                 E-TTSSEEE CS
       eIF2A 151 wspdgryvl 159
                 wspdg++v+
  KOO22408.1 118 WSPDGQHVA 126
                 *******95 PP

  == domain 2  score: 20.7 bits;  conditional E-value: 1.5e-07
                 ECCEESSS.EEEEEE-TTS..S-EEEEESSSSCEEEEEEC.....SCEEEEEEEEES--E..EEE-TTSSEEEEE-TTSSS-EEEEEETTTTEEEEEEE CS
       eIF2A  53 vvelkkegpihdvaWspks..kefaviyGkmpakvslfdl.....kvkviskleeqkrNt..iffspkgklvllaGfgnlaGeleiwdvkkkkkiakae 142
                   ++k + ++  +aW+p+s  k f +  G    ++  +       +++++++l+++ +N+  i fspkg++++++G   +   + iwdv+++ ++ +  
  KOO22408.1 145 LKNIKFQSEVNEMAWEPTSggKFFFLTTGSGSVEIFRYADmlaqeQAQPVHSLQAHTANCycIDFSPKGEYLAVGGADAM---VTIWDVHELVCLRTCT 240
                 4456667779******985336788889988877777755455445*************64489************9999...9*****9998887765 PP

                 -T CS
       eIF2A 143 aa 144
                  +
  KOO22408.1 241 RF 242
                 44 PP

  == domain 3  score: 0.6 bits;  conditional E-value: 0.22
                 EEEEEECS.CEEEEEEE.EES--EEEE-TTSS CS
       eIF2A  84 kvslfdlk.vkviskle.eqkrNtiffspkgk 113
                  v++ d+  +++++kl+ +++ N++ ++p+  
  KOO22408.1 266 YVDIADVStGEQVHKLScSAAMNSVAWHPSRL 297
                 34444442244455544223445555555544 PP

>> WD40_like  WD40-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.0      0.35   6.9e+02       3      45 ..      27      71 ..      25      75 .. 0.78
   2 !    6.0   0.0    0.0032       6.5       5      34 ..     115     144 ..      80     189 .. 0.86
   3 !   16.2   0.0   2.6e-06    0.0052       3      48 ..     204     249 ..     202     290 .. 0.80

  Alignments for each domain:
  == domain 1  score: -0.7 bits;  conditional E-value: 0.35
   WD40_like  3 iYsidiskkgslilyGgkddkctvlkleslesvsi..vesfedSv 45
                + s+  s  g+ ++ G+ d+ ++v +l+   s +   +++ +dSv
  KOO22408.1 27 VHSVAWSCGGQKLASGSVDQSVRVWSLHETGSATHteLTGHQDSV 71
                789999999****************99876655431145666766 PP

  == domain 2  score: 6.0 bits;  conditional E-value: 0.0032
   WD40_like   5 sidiskkgslilyGgkddkctvlklesles 34 
                 +i  s++g+ +++G kdd++++++++  + 
  KOO22408.1 115 NIRWSPDGQHVAVGDKDDNIAIIEMRKCKA 144
                 566788999999999999999998876554 PP

  == domain 3  score: 16.2 bits;  conditional E-value: 2.6e-06
   WD40_like   3 iYsidiskkgslilyGgkddkctvlkleslesvsivesfedSvifv 48 
                  Y id+s+kg+++++Gg d  +t+ +++ l      + fe  v   
  KOO22408.1 204 CYCIDFSPKGEYLAVGGADAMVTIWDVHELVCLRTCTRFEWPVRTL 249
                 7****************************99999999988666555 PP

>> Cytochrom_D1  Cytochrome D1 heme domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.6   0.1   7.3e-05      0.15      13     317 ..      89     156 ..      72     184 .. 0.56
   2 !   10.0   0.0   0.00011      0.22      23     119 ..     189     285 ..     174     308 .. 0.76

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 7.3e-05
                   GGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT.SSEEEEEETTSEEEEEESSSSSEEEEEE-SSEEEEEEE--TTSEEEEEEEETTEEEEEETTT- CS
  Cytochrom_D1  13 dagkvalldgdskeilavletgyalHisrvfasdgRyvyvigRDgkvtliDLwakeivaevkiGlnarsvavSqddryvivgnYlPgqlvildaetL 109
                   ++  v++ d                                                                                        
    KOO22408.1  89 GDRTVRIWDTR-------------------------------------------------------------------------------------- 99 
                   34444444444...................................................................................... PP

                   -EEEEEE--EE-SSSS---EEEEEE-SSSSEEEEEETTTTEEEEEE-SSSSSEEEEEEE--SSEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEE CS
  Cytochrom_D1 110 elvkvisargltvderesRVaaivasperpefvvnlkdtgeillvdysdlknlktrtieaakflhDggldpdkRYflaaanaedkvavvdtkegklv 206
                                                                                                                    
    KOO22408.1   - -------------------------------------------------------------------------------------------------   -
                   ................................................................................................. PP

                   EEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE--TTT.-TTTBTSEEEEEE-SSS---EE--TT-SEEEEE-TT-SSHT-EEEEETTBT CS
  Cytochrom_D1 207 illdvgktphklrvanmvHlelGpvWttshkgdfvvsligtdsesvldeqaWkvvkeikveGqglFvkthpdskqlwvdaflnpdndsvaviDkktl 303
                                                                     + k+v++i+++G+ + ++  pd +++ v      ++d++a+i+ ++ 
    KOO22408.1 100 --------------------------------------------------TNKQVHAIETRGENINIRWSPDGQHVAVG----DKDDNIAIIEMRKC 142
                   ..................................................45555555555555555555555544433....34444555555555 PP

                   -EEE-HHHHHT--E CS
  Cytochrom_D1 304 ekvltlaesaglkv 317
                   +  ++++ +++++ 
    KOO22408.1 143 KALKNIKFQSEVNE 156
                   44444444444333 PP

  == domain 2  score: 10.0 bits;  conditional E-value: 0.00011
                   TT-SEEEEEE-STTEEEEEE-TT.SSEEEEEETTSEEEEEESSSSSEEEE.EE-SSEEEEEEE--TTSEEEEEEEETTEEEEEETTT--EEEEEE-- CS
  Cytochrom_D1  23 dskeilavletgyalHisrvfasdgRyvyvigRDgkvtliDLwakeivae.vkiGlnarsvavSqddryvivgnYlPgqlvildaetLelvkvisar 118
                   ++ + ++ l+++ a      f++ g y+ v g D+ vt+ D+++   +++  +     r +  S d r+++ g+ +   + i d  t e v+++s  
    KOO22408.1 189 EQAQPVHSLQAHTANCYCIDFSPKGEYLAVGGADAMVTIWDVHELVCLRTcTRFEWPVRTLSFSCDSRFLASGS-EDLYVDIADVSTGEQVHKLSCS 284
                   55667777888888888889************************996665157788999999999***999987.4556677777777777766655 PP

                   E CS
  Cytochrom_D1 119 g 119
                    
    KOO22408.1 285 A 285
                   4 PP

>> PD40  WD40-like Beta Propeller Repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.0     9e-06     0.018       5      21 ..     107     123 ..     104     126 .. 0.87
   2 ?   -2.3   0.1       2.4   4.7e+03      22      38 .]     166     181 ..     164     181 .. 0.76
   3 ?   -1.1   0.0      0.98     2e+03      13      24 ..     206     217 ..     200     217 .. 0.83
   4 ?   -1.7   0.0       1.5   3.1e+03      15      31 ..     291     313 ..     287     319 .. 0.64

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 9e-06
                 -SSSS.EEEEEE-TTSS CS
        PD40   5 tntpgnegaPsfSPDGk 21 
                 + t g+++++++SPDG+
  KOO22408.1 107 IETRGENINIRWSPDGQ 123
                 6799************8 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 2.4
                 EEEEEEECT.TCEEEEE CS
        PD40  22 rlaFsSdRgsGkpdIyv 38 
                 ++ F  +++ G+ +I++
  KOO22408.1 166 KFFFLTTGS-GSVEIFR 181
                 567888877.9999986 PP

  == domain 3  score: -1.1 bits;  conditional E-value: 0.98
                 EEEE-TTSSEEE CS
        PD40  13 aPsfSPDGkrla 24 
                 ++ fSP G +la
  KOO22408.1 206 CIDFSPKGEYLA 217
                 6779****9987 PP

  == domain 4  score: -1.7 bits;  conditional E-value: 1.5
                 EE-TTSSEEEEEEECT....... CS
        PD40  15 sfSPDGkrlaFsSdRg......s 31 
                 ++ P    la++ d +      +
  KOO22408.1 291 AWHPSRLLLAYAADDKdrvgrdD 313
                 78888888888887445544444 PP

>> Nup160  Nucleoporin Nup120/160
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.2   0.1     0.013        27     233     270 ..      39      75 ..      21      83 .. 0.72
   2 !   11.6   0.1     4e-05     0.079     233     259 ..      84     110 ..      79     141 .. 0.84
   3 ?   -0.9   0.0      0.24   4.7e+02     232     257 ..     215     240 ..     184     288 .. 0.79

  Alignments for each domain:
  == domain 1  score: 3.2 bits;  conditional E-value: 0.013
                 EEEEETT-EEEEEETTTTEEEEEEE--.-SSSTTS--S CS
      Nup160 233 lfalsrdgkLrvWnlltgkclatidllrdeeaqdesss 270
                 l++ s+d+ +rvW+l     + + +l+    + +++ +
  KOO22408.1  39 LASGSVDQSVRVWSLHETGSATHTELT-GHQDSVDQLR 75 
                 667799*********887777777887.3344444444 PP

  == domain 2  score: 11.6 bits;  conditional E-value: 4e-05
                 EEEEETT-EEEEEETTTTEEEEEEE-- CS
      Nup160 233 lfalsrdgkLrvWnlltgkclatidll 259
                 l ++s d+++r+W+++t+k++  i++ 
  KOO22408.1  84 LGTASGDRTVRIWDTRTNKQVHAIETR 110
                 668999***************999987 PP

  == domain 3  score: -0.9 bits;  conditional E-value: 0.24
                 EEEEEETT-EEEEEETTTTEEEEEEE CS
      Nup160 232 ylfalsrdgkLrvWnlltgkclatid 257
                 yl++   d  + +W++  + cl+t++
  KOO22408.1 215 YLAVGGADAMVTIWDVHELVCLRTCT 240
                 5566667888899********99964 PP

>> IKI3  IKI3 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.8   0.3   0.00018      0.36     305     406 ..      25     127 ..      17     207 .. 0.58
   2 ?   -2.6   0.0      0.49   9.8e+02     252     279 ..     276     308 ..     268     312 .. 0.69

  Alignments for each domain:
  == domain 1  score: 8.8 bits;  conditional E-value: 0.00018
                 XXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXX...XXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXX.XXXXXXXXXXXXXXXXXX CS
        IKI3 305 eevqsLaWsadSevLav.rledrvqlwtisNyhWYLKqelrysasegveevkWdpekpltLlvltesgkievvdfafeta.vsetssendvgtvaViDg 401
                  +v+s+aWs+ ++ La  ++ ++v++w           el+  ++++v ++ Wdp +p  L  ++ ++++++ d   + + +  +++ +++ +    Dg
  KOO22408.1  25 RKVHSVAWSCGGQKLASgSVDQSVRVWSLHETGSATHTELT-GHQDSVDQLRWDPLNPEVLGTASGDRTVRIWDTRTNKQvHAIETRGENINIRWSPDG 122
                 56677777777777777566666777777766666666666.445555667777777776665555444444333222210122222333333333344 PP

                 XXXXX CS
        IKI3 402 kklll 406
                 +++ +
  KOO22408.1 123 QHVAV 127
                 44433 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 0.49
                 XXXXXX.....XXXXXXXXXXXXXXXXXXXXXX CS
        IKI3 252 ekvdgl.....eeaLaWrPsGsliAstqrkkdk 279
                 e+v+ l      +++aW Ps  l+A ++ +kd+
  KOO22408.1 276 EQVHKLscsaaMNSVAWHPSRLLLAYAADDKDR 308
                 555555444447788888888888888876665 PP

>> Coatomer_WDAD  Coatomer WD associated region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   6.7e-05      0.13     119     175 ..      83     142 ..      22     211 .. 0.72
   2 ?    9.0   0.0   0.00033      0.65      37      99 ..     115     185 ..      99     267 .. 0.69
   3 ?   -0.1   0.0      0.19   3.7e+02     132     165 ..     271     305 ..     256     309 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 6.7e-05
                    XXXXXXXX..XXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXXXX.XXXXXXXXXXX CS
  Coatomer_WDAD 119 lLgvkseg.svsfYDweqgklvrridvkk.vknVvwsddgelvalvsk.dtvyilsynle 175
                    +Lg+ s + +v ++D  ++k+v+ i+      n+ ws+dg++va+  k d++ i++ ++ 
     KOO22408.1  83 VLGTASGDrTVRIWDTRTNKQVHAIETRGeNINIRWSPDGQHVAVGDKdDNIAIIEMRKC 142
                    666655443788889999999999988853467889999999998854145555554443 PP

  == domain 2  score: 9.0 bits;  conditional E-value: 0.00033
                    XXXXXXXXXXXXX.XXXXXXXXXX...XXXXXX.XXXXXXXXXXXXX..XXXXXXXXX.XXXXXX.XXXXX CS
  Coatomer_WDAD  37 slshnpngrfvlV.cgdgeyiiyt...alalrn.kaygkgldfvwvs..snrfavles.sksvkifknfke 99 
                    +++ +p+g+ v+V  +d+++ i+     +al+n k + + ++++w +   ++f +l++ s+sv+if+  + 
     KOO22408.1 115 NIRWSPDGQHVAVgDKDDNIAIIEmrkCKALKNiKFQSEVNEMAWEPtsGGKFFFLTTgSGSVEIFRYADM 185
                    68899********844555555554775555661445667899999985666888887799****986654 PP

  == domain 3  score: -0.1 bits;  conditional E-value: 0.19
                    XXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXXXXX CS
  Coatomer_WDAD 132 Dweqgklvrridvkk.vknVvwsddgelvalvskd 165
                    D+ +g++v++++ ++ ++ V w +++ l+a +++d
     KOO22408.1 271 DVSTGEQVHKLSCSAaMNSVAWHPSRLLLAYAADD 305
                    999*********998799*******9999988766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (324 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       446  (0.0248759); expected 358.6 (0.02)
Passed bias filter:                      402  (0.0224218); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.55u 0.27s 00:00:00.82 Elapsed: 00:00:00.40
# Mc/sec: 2401.92
//
Query:       KOO22409.1  [L=374]
Description: myb family transcription factor, partial [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    8.6e-30  102.7   3.6    6.5e-15   55.1   1.5    2.3  2  Myb_DNA-binding  Myb-like DNA-binding domain
    1.6e-21   76.3   0.3    5.4e-15   55.4   0.2    2.3  2  Myb_DNA-bind_6   Myb-like DNA-binding domain
    5.4e-08   32.9   0.0     0.0031   17.5   0.0    2.2  2  SLIDE            SLIDE
     0.0044   16.9   0.0      0.019   14.8   0.0    1.9  2  Myb_DNA-bind_7   Myb DNA-binding like
  ------ inclusion threshold ------
        1.5    9.3   4.9          7    7.1   0.2    2.8  3  Myb_DNA-bind_4   Myb/SANT-like DNA-binding domain


Domain annotation for each model (and alignments):
>> Myb_DNA-binding  Myb-like DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.1   1.5   1.8e-18   6.5e-15       1      46 []     110     156 ..     110     156 .. 0.97
   2 !   47.7   0.0   3.6e-16   1.3e-12       1      44 [.     162     205 ..     162     207 .. 0.96

  Alignments for each domain:
  == domain 1  score: 55.1 bits;  conditional E-value: 1.8e-18
                      CSSSBHHHHHHHHHHHHHHT.TCHHHHHHHHTSS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgkWteeEdelLleavkkhG.nrWkkIaerlggRtekqcrsrwrnyl 46 
                      +++W + Ed +Lle+v++hG ++W++Ia +l++R +kqcr+rw+n+l
       KOO22409.1 110 KQAWKTHEDARLLELVELHGaSNWSRIAAELPSRIGKQCRERWHNHL 156
                      689******************************************97 PP

  == domain 2  score: 47.7 bits;  conditional E-value: 3.6e-16
                      CSSSBHHHHHHHHHHHHHHTTCHHHHHHHHTSS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgkWteeEdelLleavkkhGnrWkkIaerlggRtekqcrsrwrn 44 
                      + +++e+Ed  + eav+ hG +W+ I + ++gRt++++++rw++
       KOO22409.1 162 KESFSEDEDRAIMEAVAAHGTKWAHIVKLIPGRTDNAIKNRWNS 205
                      579***************************************96 PP

>> Myb_DNA-bind_6  Myb-like DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.4   0.2   1.5e-18   5.4e-15       1      58 [.     113     171 ..     113     173 .. 0.95
   2 !   25.8   0.0   2.5e-09   9.1e-06       1      43 [.     165     207 ..     165     216 .. 0.89

  Alignments for each domain:
  == domain 1  score: 55.4 bits;  conditional E-value: 1.5e-18
  Myb_DNA-bind_6   1 WteeEdeiLlklvekyg.ndWknIaealnrRtpkqcfdrwknkLrpkisrkkwskeedi 58 
                     W   Ed +Ll+lve +g ++W+ Ia +l+ R  kqc++rw+n+L+p+++++++s+ ed+
      KOO22409.1 113 WKTHEDARLLELVELHGaSNWSRIAAELPSRIGKQCRERWHNHLSPSVKKESFSEDEDR 171
                     8899************966*********88*************************9996 PP

  == domain 2  score: 25.8 bits;  conditional E-value: 2.5e-09
  Myb_DNA-bind_6   1 WteeEdeiLlklvekygndWknIaealnrRtpkqcfdrwknkL 43 
                     ++e+Ed+++ + v ++g +W +I + ++ Rt +++++rw+++ 
      KOO22409.1 165 FSEDEDRAIMEAVAAHGTKWAHIVKLIPGRTDNAIKNRWNSTT 207
                     689************************55***********954 PP

>> SLIDE  SLIDE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.1   0.0     2e-05      0.07      46      79 ..     107     140 ..      86     145 .. 0.83
   2 !   17.5   0.0   8.6e-07    0.0031      43     103 ..     157     217 ..     142     219 .. 0.83

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 2e-05
       SLIDE  46 nkgkkeyteeeDrfllvllakyGygnyekikkei 79 
                 + +k+ ++++eD+ ll l++ +G +n+ +i +e+
  KOO22409.1 107 SVRKQAWKTHEDARLLELVELHGASNWSRIAAEL 140
                 445566************************9986 PP

  == domain 2  score: 17.5 bits;  conditional E-value: 8.6e-07
       SLIDE  43 ppsnkgkkeyteeeDrfllvllakyGygnyekikkei..resplFrfDwflksrtpqelqkRc 103
                 +ps k+++ ++e+eDr+++ ++a +G + + +i k i  r+++  +  w   +r    +q+Rc
  KOO22409.1 157 SPSVKKES-FSEDEDRAIMEAVAAHGTK-WAHIVKLIpgRTDNAIKNRWNSTTRRMLRIQRRC 217
                 35566655.*****************98.******9977778888999999999999999999 PP

>> Myb_DNA-bind_7  Myb DNA-binding like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.5   0.0      0.33   1.2e+03       7      49 ..     109     152 ..     104     155 .. 0.78
   2 !   14.8   0.0   5.4e-06     0.019       7      55 ..     161     209 ..     151     240 .. 0.88

  Alignments for each domain:
  == domain 1  score: -0.5 bits;  conditional E-value: 0.33
  Myb_DNA-bind_7   7 ktkkWskeetekFYkaLsqfGt.DFsliaklfpkrtrrqlKlKF 49 
                     +++ W+++e  +  + ++  G  ++s ia+ +p+r  +q ++++
      KOO22409.1 109 RKQAWKTHEDARLLELVELHGAsNWSRIAAELPSRIGKQCRERW 152
                     78899999999999999999953788888888888777776665 PP

  == domain 2  score: 14.8 bits;  conditional E-value: 5.4e-06
  Myb_DNA-bind_7   7 ktkkWskeetekFYkaLsqfGtDFsliaklfpkrtrrqlKlKFkkEerk 55 
                     k+++ s++e +   +a+   Gt +  i kl p+rt++ +K+++++  r+
      KOO22409.1 161 KKESFSEDEDRAIMEAVAAHGTKWAHIVKLIPGRTDNAIKNRWNSTTRR 209
                     78899999***********************************987665 PP

>> Myb_DNA-bind_4  Myb/SANT-like DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.1   0.2     0.002         7      15      62 ..     112     154 ..     110     190 .. 0.79
   2 ?    3.6   0.1     0.024        86      50      73 ..     193     216 ..     162     222 .. 0.77
   3 ?   -2.4   0.1       1.8   6.6e+03      38      55 ..     235     252 ..     231     253 .. 0.84

  Alignments for each domain:
  == domain 1  score: 7.1 bits;  conditional E-value: 0.002
                     HHHH..HHHHHHH..SS--HHHHHHHHHHHHHHC----HHHHHHHHHH CS
  Myb_DNA-bind_4  15 awgerilelrfqergkkrnkklWeevaeamaergykrspeqCkeKien 62 
                     aw++   ++r+ e  ++++++ W  +a+++     +r  +qC+e+++n
      KOO22409.1 112 AWKT-HEDARLLELVELHGASNWSRIAAELP----SRIGKQCRERWHN 154
                     6666.23444444567888888999998885....56789******87 PP

  == domain 2  score: 3.6 bits;  conditional E-value: 0.024
                     ---HHHHHHHHHHHHHHHHCSSSS CS
  Myb_DNA-bind_4  50 krspeqCkeKienLkkrYkkeker 73 
                      r++  +k+++++  +r  ++++r
      KOO22409.1 193 GRTDNAIKNRWNSTTRRMLRIQRR 216
                     3999*********99998888776 PP

  == domain 3  score: -2.4 bits;  conditional E-value: 1.8
                     HHHHHHHHHHC----HHH CS
  Myb_DNA-bind_4  38 eevaeamaergykrspeq 55 
                     +++a++m ++g++ s+ q
      KOO22409.1 235 QAIAKQMIAQGVSASDAQ 252
                     6799****9999888766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (374 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       611  (0.0340789); expected 358.6 (0.02)
Passed bias filter:                      338  (0.0188521); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.46u 0.20s 00:00:00.66 Elapsed: 00:00:00.35
# Mc/sec: 3170.50
//
Query:       KOO22410.1  [L=144]
Description: hypothetical protein Ctob_005105 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.026   14.3   0.8      0.043   13.7   0.8    1.2  1  DUF2970   Protein of unknown function (DUF2970)
       0.13   12.5   0.8       0.16   12.2   0.8    1.1  1  Shisa     Wnt and FGF inhibitory regulator
        3.6    6.4   5.1        4.5    6.1   5.1    1.1  1  DUF677    Protein of unknown function (DUF677)
          5    6.5  26.7        5.7    6.3  26.7    1.0  1  FAP       Fibronectin-attachment protein (FAP)


Domain annotation for each model (and alignments):
>> DUF2970  Protein of unknown function (DUF2970)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.8   9.6e-06     0.043      15      49 ..       4      38 ..       4      39 .. 0.94

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 9.6e-06
     DUF2970 15 VrkgknrerDfaqlsplhviivGlilaalfvllLi 49
                V kgk+ +  +++l+pl+ +iv ++ ++++v++Li
  KOO22410.1  4 VSKGKEMAVALTNLNPLAPLIVTVVIVVALVAMLI 38
                7799999999************************9 PP

>> Shisa  Wnt and FGF inhibitory regulator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.8   3.5e-05      0.16      96     174 ..      24      97 ..       5     118 .. 0.48

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 3.5e-05
       Shisa  96 fvivgvvvivcccgclkkkqrekrpgrenlssalaevgpivte....ttsattvvhsrysepqqssssssypgatnqgyqpvp 174
                 +v+v++vv+++   ++kk +++ ++  +++  a a   p  ++    +++a+         p++++ s+++p+ +    +p p
  KOO22410.1  24 IVTVVIVVALVAMLIFKKVNKSTPAAAAPTPIAAAPAAPAAASsskpKRAAKS--------PAPAAKSPTPPAKS-PAKSPAP 97 
                 45566666666777888888777633333333333333333321111222222........22222222222222.1111222 PP

>> DUF677  Protein of unknown function (DUF677)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.1   5.1     0.001       4.5     181     224 ..      23      67 ..       5      78 .. 0.88

  Alignments for each domain:
  == domain 1  score: 6.1 bits;  conditional E-value: 0.001
      DUF677 181 aisnvvfvaafvaVlvlSvvlaalaapavva.vagalavPleavg 224
                 +i++vv+v a va l++ +v  ++ a a+ + +a+a a+P  a +
  KOO22410.1  23 LIVTVVIVVALVAMLIFKKVNKSTPAAAAPTpIAAAPAAPAAASS 67 
                 699*********************98888889********87755 PP

>> FAP  Fibronectin-attachment protein (FAP)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.3  26.7    0.0013       5.7      19     128 ..      24     129 ..       9     139 .. 0.55

  Alignments for each domain:
  == domain 1  score: 6.3 bits;  conditional E-value: 0.0013
         FAP  19 aiaavagasavalalP.avanadpePaPppPstaeaapaeaaaa..paPaapapaPapadpnapeaaPapadPnapapppadPnapappavdPnapepg 114
                  +++v  +++va+ +   v ++  +Pa ++P++ +aapa++aaa  ++P+  a +Papa   a +++P pa   a +p+pa   apa   + P+   + 
  KOO22410.1  24 IVTVVIVVALVAMLIFkKVNKS--TPAAAAPTPIAAAPAAPAAAssSKPKRAAKSPAPA---AKSPTP-PAKSPAKSPAPAPAPAPAKGLKSPKV-VSK 115
                 4455555555555444134444..56666666666666644443014555555555553...333344.44444555666655566665555544.667 PP

         FAP 115 rvdnavGGfsyvvP 128
                 rv+     + ++ P
  KOO22410.1 116 RVSAELAALEFASP 129
                 77777766666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (144 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1175  (0.0655363); expected 358.6 (0.02)
Passed bias filter:                      655  (0.036533); expected 358.6 (0.02)
Passed Vit filter:                        89  (0.00496402); expected 17.9 (0.001)
Passed Fwd filter:                        15  (0.000836633); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.44u 0.25s 00:00:00.69 Elapsed: 00:00:00.36
# Mc/sec: 1196.40
//
Query:       KOO22411.1  [L=374]
Description: mRNA polyadenylation regulating, partial [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.3e-17   62.8   1.9    5.7e-17   62.0   1.9    1.3  1  LsmAD     LsmAD domain
    1.6e-08   34.6   0.0    3.1e-08   33.6   0.0    1.5  1  SM-ATX    Ataxin 2 SM domain
     0.0036   16.9   0.1     0.0072   15.9   0.1    1.5  1  PAM2      Ataxin-2 C-terminal region
  ------ inclusion threshold ------
      0.024   15.0   0.0      0.032   14.5   0.0    1.2  1  zf-C4H2   Zinc finger-containing protein


Domain annotation for each model (and alignments):
>> LsmAD  LsmAD domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.0   1.9   1.3e-20   5.7e-17       3      69 ..     188     255 ..     186     256 .. 0.92

  Alignments for each domain:
  == domain 1  score: 62.0 bits;  conditional E-value: 1.3e-20
       LsmAD   3 vkstYdEnlYTtkldksspeykereaeAeriArEIessastnahvaeerglkv.ddsg.ldEEdkYSaV 69 
                  +s+Y ++lYTtkl   ++ + e+ a+A+ +A EIe++ stn+hv eerglk  dd++ +dEE+kYS V
  KOO22411.1 188 HRSNYSDDLYTTKLTM-DKYTPEQLAKAQAMAAEIEKKGSTNKHVLEERGLKElDDNDdEDEEAKYSMV 255
                 579*************.9999******************************87855555********98 PP

>> SM-ATX  Ataxin 2 SM domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.6   0.0     7e-12   3.1e-08       2      81 .]      26     110 ..      25     110 .. 0.93

  Alignments for each domain:
  == domain 1  score: 33.6 bits;  conditional E-value: 7e-12
                 XX-HHHHHTTTTSEEEEEETTS-EEEEEEEEE-T............T--EEEEEEEETTS...........-EEEEEEE-GGGEEEEXXX CS
      SM-ATX   2 drllflltslvGkevevtvknGevyeGifstvsl..........ekdfsvvLkmarkvkkanskssspssgeipdtliikakdivdieak 81 
                 +rl f++ slvG++v++t+k G  + Gi+st              k+ +vv++ +r+v        ++   e +   ++++ div++++k
  KOO22411.1  26 ERLSFAMRSLVGLPVTITLKGGGLFDGILSTGWWdeagcpedakGKQAGVVMRVVRQVVG-----PEELVAEAVARRVFRRTDIVSLVIK 110
                 8******************************988889999****99*************9.....7888888888999*******99876 PP

>> PAM2  Ataxin-2 C-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.1   1.6e-06    0.0072       1      16 [.     308     323 ..     308     323 .. 0.93

  Alignments for each domain:
  == domain 1  score: 15.9 bits;  conditional E-value: 1.6e-06
                 -----SSTTSS----T CS
        PAM2   1 akkSkLNPnAkEFVPs 16 
                 ++kSkLN  Ak FVP+
  KOO22411.1 308 SMKSKLNAAAKAFVPG 323
                 59*************5 PP

>> zf-C4H2  Zinc finger-containing protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.5   0.0   7.1e-06     0.032      77     164 ..     209     302 ..     197     366 .. 0.72

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 7.1e-06
     zf-C4H2  77 kslekakklyeeykklkeevnelrselglekledleeeeeellkeeifekqklkaaavelkkesstapappa....pptsllskssqapsa....p 164
                 ++l+ka+ + +e++k  ++  ++++e gl++l+d+++e+ee+  + ++++  ++  ++++  ++ tapa+pa    pp s  s+s  ap+a    p
  KOO22411.1 209 EQLAKAQAMAAEIEKKGSTNKHVLEERGLKELDDNDDEDEEAKYSMVLTSDGTD--PTRAVVSTITAPATPAlpaaPPASGGSPSVDAPAAggeaP 302
                 678999999*****999999999999********99999998777777666554..3333345555555555333466655555555554422221 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (374 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       557  (0.031067); expected 358.6 (0.02)
Passed bias filter:                      382  (0.0213063); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.47u 0.26s 00:00:00.73 Elapsed: 00:00:00.41
# Mc/sec: 2719.91
//
Query:       KOO22412.1  [L=216]
Description: psbp domain-containing protein chloroplastic-like protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.5e-14   54.4   0.0    2.2e-14   53.9   0.0    1.1  1  PsbP      PsbP


Domain annotation for each model (and alignments):
>> PsbP  PsbP
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.9   0.0   1.2e-18   2.2e-14       4     154 ..      55     214 ..      53     215 .. 0.85

  Alignments for each domain:
  == domain 1  score: 53.9 bits;  conditional E-value: 1.2e-18
                 EEEEETTTTEEEEEETTEEEEE-TT...TEEE.EEEESS-TTSEEEEEEEE-STT.--CHHH--HHHHHHHHHHHCC....CHCTSSEEEEEEEEEEEE CS
        PsbP   4 qeytdeedgysflyPsgWqevkgae...gadv.vFrdeiesdenvsVvispvskd.ksledlGspeevaerlvkqvl....assesgreaelidaeere 93 
                 ++y+de+ g sfl+P+g++  k +e   g  +    d+++ ++nv+++++p+++d +sl ++G+ + ++++l+ q       +  sg + e +  e+ +
  KOO22412.1  55 TSYKDERYGVSFLLPEGYVM-KPQEladGRRLvTATDPNDDTTNVFIAFTPIRPDyTSLGSFGTIDFIGSTLLPQCGsngaCAFASGDDIEGVMLEQAS 152
                 58****************98.444447766554789*************************************99984443223334667767666643 PP

                 ET.TEEEEEEEEEEEETTEEEEEEEEEEEE.ETT...EEEEEEEEEEHHHHCCCHHHHHHHHHC- CS
        PsbP  94 addgktyYeleytvkspdeqerhqlaavav.sng...kLYtltlqtpekrwekvekklekvvkSF 154
                     k  + ++yt++++++ +rh  + +a+  +g    L tlt+q+ e +   v ++++++++S+
  KOO22412.1 153 ---VKGSFVYDYTIQQQGGPMRHLRSLLAIkADGaasVLITLTAQCLEPKHAAVAATFKAIIESY 214
                 ...67888889*******************66669999*************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (216 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       248  (0.0138323); expected 358.6 (0.02)
Passed bias filter:                      209  (0.0116571); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.24s 00:00:00.63 Elapsed: 00:00:00.40
# Mc/sec: 1638.25
//
Query:       KOO22413.1  [L=264]
Description: ADP-ribosylation factor-like 13b [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.8e-29  101.8   0.0    3.8e-29  101.4   0.0    1.2  1  Arf             ADP-ribosylation factor family
    6.4e-09   36.1   0.0    1.1e-08   35.4   0.0    1.4  1  Roc             Ras of Complex, Roc, domain of DAPkinase
    1.5e-06   27.9   0.0    1.7e-06   27.7   0.0    1.3  1  Ras             Ras family
     0.0002   21.3   0.2       0.17   11.8   0.0    2.2  2  NACHT           NACHT domain
    0.00058   19.1   0.1       0.75    8.9   0.0    2.4  2  G-alpha         G-protein alpha subunit
     0.0033   17.1   0.1     0.0071   16.0   0.1    1.5  1  SRP54           SRP54-type protein, GTPase domain
  ------ inclusion threshold ------
        0.1   12.5   0.3       0.59   10.0   0.1    2.1  2  NTPase_1        NTPase
       0.12   12.1   0.0       0.26   11.1   0.0    1.5  1  NOG1            Nucleolar GTP-binding protein 1 (NOG1)
        0.4    9.9   1.4       0.45    9.8   0.1    1.6  2  Septin          Septin
       0.49    9.2   5.0       0.68    8.7   5.0    1.1  1  PV-1            PV-1 protein (PLVAP)
          1    9.7   0.0          1    9.7   0.0    2.2  2  PH_6            Pleckstrin homology domain
        1.1    7.8   6.3        1.6    7.3   6.3    1.3  1  DUF3138         Protein of unknown function (DUF3138)
          9    4.7   6.7         12    4.3   6.7    1.1  1  Macoilin        Macoilin family
          9    6.7   9.2        2.8    8.4   0.1    3.1  3  PG_isomerase_N  Phosphoglucose isomerase N-terminal domain


Domain annotation for each model (and alignments):
>> Arf  ADP-ribosylation factor family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  101.4   0.0     3e-32   3.8e-29      16     148 ..       2     135 ..       1     166 [. 0.93

  Alignments for each domain:
  == domain 1  score: 101.4 bits;  conditional E-value: 3e-32
                 EEEEEESTTSSHHHHHHHHHHSSCEE.CSSSSSEEEEEEEETTEEEEEEEE-SSGGGGGGGGGGCTTESEEEEEEETT-CTTHHHHHHHHHHHCTSGCC CS
         Arf  16 rilllGLDnaGKtTilkklkleelvt.tvPTigfnveeleiknlkftvwDvGGqeklRplWknYfektdavifvvDsadreRleeakeeLkalleeeel 113
                  +lllG D+ GKtT    l  + l++ t+PT+gf +++ +  +  ++vw++GG   +R +W +Y++  +a++f+vD++d  R++ea+e L++ ++++ +
  KOO22413.1   2 TLLLLGCDGGGKTTFTASLCGKLLSEqTKPTTGFITKDAQRFGCPLKVWELGGGPGIRGVWPEYYSGAHAILFLVDASDAARFAEARELLHQAVAHDLV 100
                 689*****************99876549*********************************************************************** PP

                 TTSEEEEEEE-TTSTTSS-HHHHHHHTTGGGSSSS CS
         Arf 114 kevallvlaNKqDlpealseeelrellgleelkgk 148
                 +  +llv+a KqD p+a+ ++e++e+l ++el g+
  KOO22413.1 101 RGKPLLVVATKQDRPHAVGAAEIAEALRVHELDGS 135
                 *******************************9844 PP

>> Roc  Ras of Complex, Roc, domain of DAPkinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.4   0.0   8.3e-12   1.1e-08       2     119 ..       3     113 ..       2     114 .. 0.82

  Alignments for each domain:
  == domain 1  score: 35.4 bits;  conditional E-value: 8.3e-12
                 EEEESSTTSSHHHHHHCHCT-CCC-EEETTTTEEEEEEECGGSGGCTTBTTTTCEEEEEEEE-SGGCTTTT-HHHHCTSCEEEEEEE...GHHHHCHHH CS
         Roc   2 vvlvGdsgvGKtsllkrfvedkfsekekstigvdfltkevtkikgvendkkvkkvklniWDtaGqerfrslhplylreaalailvyd...srssenlke 97 
                 ++l+G  g GKt++  +++ +  se++k+t+g   +tk++++            + l++W ++G   +r + p y+++a+++++++d   + ++++++e
  KOO22413.1   3 LLLLGCDGGGKTTFTASLCGKLLSEQTKPTTGF--ITKDAQR----------FGCPLKVWELGGGPGIRGVWPEYYSGAHAILFLVDasdAARFAEARE 89 
                 689****************************95..5665522..........2488*****************************99543335566677 PP

                 HHHHHHHH..CSSS-EEEEEE-TT CS
         Roc  98 Wlkelkkv..agkspvilvgnkiD 119
                  l++  ++  ++ +p+++v++k D
  KOO22413.1  90 LLHQAVAHdlVRGKPLLVVATKQD 113
                 66666544236789********99 PP

>> Ras  Ras family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.7   0.0   1.3e-09   1.7e-06       2     118 ..       3     116 ..       2     227 .. 0.88

  Alignments for each domain:
  == domain 1  score: 27.7 bits;  conditional E-value: 1.3e-09
                 EEEEESTTSSHHHHHHHHHHSSCSSSCTTTSSEEEEEEEEEETTEEEEEEEEEETTSGGGHHHHHHHHTTESEEEEEEETTBHHHHHTHHHHHHHHHHH CS
         Ras   2 lvlvGdsavGKtslllrfvkdkFkeeyesTigvdfytkeievdgkevkleiwDTAGqeefkslrelyyrdaegillvyditsresfenvkkwveeikrv 100
                 l+l+G  + GKt+++ +   +  +e+ ++T g  f tk+ +     + l++w   G    + + + yy++a++il + d ++++ f ++++++++   +
  KOO22413.1   3 LLLLGCDGGGKTTFTASLCGKLLSEQTKPTTG--FITKDAQ--RFGCPLKVWELGGGPGIRGVWPEYYSGAHAILFLVDASDAARFAEARELLHQAVAH 97 
                 689****************************5..6666655..45699******************************************888777666 PP

                 ST.TTSEEEEEEETTTGGG CS
         Ras 101 ae.envpivLvGnKvDlee 118
                    +  p+++v++K D  +
  KOO22413.1  98 DLvRGKPLLVVATKQDRPH 116
                 555889*********9765 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.2   0.4    0.0033       4.2       2      28 ..       2      28 ..       1      37 [. 0.85
   2 !   11.8   0.0   0.00013      0.17      72     151 ..      61     133 ..      38     137 .. 0.83

  Alignments for each domain:
  == domain 1  score: 7.2 bits;  conditional E-value: 0.0033
                CEEEEC-TTTCHHHHHHHHHHHHCTS- CS
       NACHT  2 lvilqGeaGsGKTtLlqklalawaegk 28
                +++l G  G GKTt+ ++l+ ++ +++
  KOO22413.1  2 TLLLLGCDGGGKTTFTASLCGKLLSEQ 28
                6899***************98886665 PP

  == domain 2  score: 11.8 bits;  conditional E-value: 0.00013
                 CHHHHCCSCCCEEEEEE-STT-SS-TCH.........HHHHHCTTTTT--EEEEEEECCCHHHHCTTSSCE..EEEE--T CS
       NACHT  72 vwavllelperlLlilDglDelvtdlgqkekqpvrtlLselirkkllpeasllltvrpralrdleeqleeaivlevegfs 151
                 vw +  + ++ +L+++D+ D ++        +++r+lL++ +   l+++ +ll+ ++ + ++++    e a+ l v ++ 
  KOO22413.1  61 VWPEYYSGAHAILFLVDASDAARF-------AEARELLHQAVAHDLVRGKPLLVVATKQDRPHAVGAAEIAEALRVHELD 133
                 6777778899**********9985.......3468*********************999999977777777667776665 PP

>> G-alpha  G-protein alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.6   0.7    0.0014       1.9      24      41 ..       1      18 [.       1      29 [. 0.86
   2 !    8.9   0.0   0.00058      0.75     187     237 ..      31      80 ..      22     114 .. 0.75

  Alignments for each domain:
  == domain 1  score: 7.6 bits;  conditional E-value: 0.0014
                EEEEEEESTTSSHHHHHH CS
     G-alpha 24 vkllllGqseSGKsTilk 41
                ++llllG++++GK+T+  
  KOO22413.1  1 MTLLLLGCDGGGKTTFTA 18
                579************976 PP

  == domain 2  score: 8.9 bits;  conditional E-value: 0.00058
                 ---SEEEEEEECT-TEEEEEEEE-SSHHHHHGTCCCTTTECEEEEEEEGGG CS
     G-alpha 187 ktvGisetkfevdsklefrivdvgGqrserkkWvpffddvdaiiFlvslse 237
                 +t+G++  + +   + +++++++gG    r  W ++++++ ai+Flv  s+
  KOO22413.1  31 PTTGFITKDAQRF-GCPLKVWELGGGPGIRGVWPEYYSGAHAILFLVDASD 80 
                 4788887777665.78999***************************99765 PP

>> SRP54  SRP54-type protein, GTPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.1   5.5e-06    0.0071       4      43 ..       3      44 ..       1      55 [. 0.85

  Alignments for each domain:
  == domain 1  score: 16.0 bits;  conditional E-value: 5.5e-06
                EEEEESTTSSHHHHHHHHHHHHHHT..TS-EEEEEESTSSTT CS
       SRP54  4 illvGlqGaGKTttlaKLaallkke..gkkvllvaaDtfRaa 43
                +ll+G  G GKTt +a L  +l +e  + ++ +++ D  R +
  KOO22413.1  3 LLLLGCDGGGKTTFTASLCGKLLSEqtKPTTGFITKDAQRFG 44
                79****************9888777345567899***99987 PP

>> NTPase_1  NTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   0.1   0.00046      0.59       3      40 ..       4      42 ..       2      47 .. 0.80
   2 ?   -0.1   0.0      0.61   7.8e+02     113     141 ..      90     118 ..      86     135 .. 0.73

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.00046
                EEE--TTSSHHHHHHHHHHHH....GGGEEEEEEEEE-- CS
    NTPase_1  3 fiTGppGvGKtTlvkkvlellkss.gvkvgGfyteevre 40
                ++ G  G GKtT+   ++ +l s+   + +Gf+t++ ++
  KOO22413.1  4 LLLGCDGGGKTTFTASLCGKLLSEqTKPTTGFITKDAQR 42
                566889***********9887665156799****98765 PP

  == domain 2  score: -0.1 bits;  conditional E-value: 0.61
                 HHHHHHHHHHTTTSEEEEE--SS--SHHH CS
    NTPase_1 113 kfkeaveevLksekpvlavihrrkdlalv 141
                  +++av + L ++kp+l+v  ++++++ v
  KOO22413.1  90 LLHQAVAHDLVRGKPLLVVATKQDRPHAV 118
                 5789999999999**99999888754444 PP

>> NOG1  Nucleolar GTP-binding protein 1 (NOG1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0    0.0002      0.26      15      58 .]      70     113 ..      68     113 .. 0.76

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.0002
        NOG1  15 davlFllDpseecgysleeQlsLleei.kelfankpvivvlnKiD 58 
                 +a+lFl+D+s  + +  e    L + + ++l++ kp++vv++K D
  KOO22413.1  70 HAILFLVDASDAARFA-EARELLHQAVaHDLVRGKPLLVVATKQD 113
                 79********999874.55555666662456666*********88 PP

>> Septin  Septin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   0.1   0.00035      0.45       5      33 ..       1      29 [.       1      42 [. 0.85
   2 ?   -2.1   0.1       1.4   1.8e+03     160     188 ..     180     208 ..     175     231 .. 0.57

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.00035
                EEEEEEEBTTSSCCCCCCTTSSSS----- CS
      Septin  5 ftlmvvGesglGkttlintlfetdlieee 33
                +tl++ G +g Gktt+  +l+ + l e++
  KOO22413.1  1 MTLLLLGCDGGGKTTFTASLCGKLLSEQT 29
                69*******************99888775 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 1.4
                 HHHHHHHHHHHHHTT--------SSSS-S CS
      Septin 160 kefKkkireeleeeeikiyklpdeeeded 188
                 +++K ++ ++++e+e k+ +  de +   
  KOO22413.1 180 TTLKARVERDVAEQEAKLQRQRDERKARL 208
                 45666666666666666666444444332 PP

>> PV-1  PV-1 protein (PLVAP)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.7   5.0   0.00053      0.68     286     330 ..     178     224 ..     169     234 .. 0.78

  Alignments for each domain:
  == domain 1  score: 8.7 bits;  conditional E-value: 0.00053
        PV-1 286 larslragier.varensdlqrqkleaeqslrasqeakekvek.eaq 330
                     l+a +er va ++++lqrq+ e +  l+a ++ake++e  ea 
  KOO22413.1 178 GYTTLKARVERdVAEQEAKLQRQRDERKARLAAKRKAKEEAEAaEAA 224
                 55689999998699999***********9999999999987641443 PP

>> PH_6  Pleckstrin homology domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   0.0    0.0008         1      31      76 ..      85     130 ..      65     137 .. 0.81
   2 ?   -0.8   1.4       1.4   1.8e+03      24      47 ..     211     231 ..     190     236 .. 0.52

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 0.0008
        PH_6  31 aesaedaheviawAsetGkGLLffskkedkaspsgvinLadaseva 76 
                 ae+ e  h+ +a+    Gk LL ++ k+d+  ++g+ ++a+a  v 
  KOO22413.1  85 AEARELLHQAVAHDLVRGKPLLVVATKQDRPHAVGAAEIAEALRVH 130
                 444445999********************************98775 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 1.4
        PH_6  24 llksekeaesaedaheviawAset 47 
                  +   k  e+ae a+  +a A+ t
  KOO22413.1 211 KR---KAKEEAEAAEAAAAAAAAT 231
                 22...2233334444444444444 PP

>> DUF3138  Protein of unknown function (DUF3138)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.3   6.3    0.0012       1.6      19      73 ..     181     232 ..     144     251 .. 0.65

  Alignments for each domain:
  == domain 1  score: 7.3 bits;  conditional E-value: 0.0012
     DUF3138  19 aaaatadrikalkaqltalqrqvkelraalaaakaaaGgkissqkaaaaaaaaae 73 
                 + +a+ +  + +  q  +lqrq +e +a laa+   a  ++ + +aaaaaaaa+ 
  KOO22413.1 181 TLKARVE--RDVAEQEAKLQRQRDERKARLAAK-RKAKEEAEAAEAAAAAAAATA 232
                 4433333..245567789999998876666655.445555555555555555422 PP

>> Macoilin  Macoilin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.3   6.7    0.0092        12     468     513 ..     190     230 ..     170     240 .. 0.57

  Alignments for each domain:
  == domain 1  score: 4.3 bits;  conditional E-value: 0.0092
    Macoilin 468 lqqlekrLkeekearaslekqLaeekkrkkeeeetaaravalaaas 513
                 + + e +L+ ++++r    ++La  +k+k e+  +aa+a+a+aaa+
  KOO22413.1 190 VAEQEAKLQRQRDER---KARLAAKRKAKEEA--EAAEAAAAAAAA 230
                 444445554444444...45677666666555..555554444443 PP

>> PG_isomerase_N  Phosphoglucose isomerase N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.6   0.0      0.59   7.5e+02      27      62 ..      10      44 ..       6      61 .. 0.80
   2 ?    8.4   0.1    0.0022       2.8      34      75 ..      87     128 ..      56     152 .. 0.74
   3 ?   -0.2   2.9         1   1.3e+03      64      95 ..     214     248 ..     205     253 .. 0.55

  Alignments for each domain:
  == domain 1  score: 0.6 bits;  conditional E-value: 0.59
                    EECCCHHHHHHH-S-.....-SSSEEEEEEESS-TT CS
  PG_isomerase_N 27 GvGegtlaaeLaetlvaaelteeGtqFvlesaddlg 62
                    G G +t++a+L  +l+ +e t+  t F+ + a+ +g
      KOO22413.1 10 GGGKTTFTASLCGKLL-SEQTKPTTGFITKDAQRFG 44
                    78999*******9995.5668899999998887766 PP

  == domain 2  score: 8.4 bits;  conditional E-value: 0.0022
                     HHHHH-S-.....-SSSEEEEEEESS-TTCHCCCHHH---TT CS
  PG_isomerase_N  34 aaeLaetlvaaelteeGtqFvlesaddlgaAadaaelaevag 75 
                     a eL ++ va+ l+++    v+ + +d  +A +aae+ae+ +
      KOO22413.1  87 ARELLHQAVAHDLVRGKPLLVVATKQDRPHAVGAAEIAEALR 128
                     346779999*****************************9854 PP

  == domain 3  score: -0.2 bits;  conditional E-value: 1
                     HCCCHHH---TT-EEEEE...ESSTT-SEE----T CS
  PG_isomerase_N  64 AadaaelaevagArvvRv...Gfrdevdvlvpggp 95 
                     A++ ae+ae+a A+       G++++ +   p+ p
      KOO22413.1 214 AKEEAEAAEAAAAAAAATaigGAAPDASSATPPAP 248
                     44445555544443332223466666666666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (264 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1735  (0.0967706); expected 358.6 (0.02)
Passed bias filter:                      966  (0.0538792); expected 358.6 (0.02)
Passed Vit filter:                       156  (0.00870099); expected 17.9 (0.001)
Passed Fwd filter:                        15  (0.000836633); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              14  [number of targets reported over threshold]
# CPU time: 0.55u 0.32s 00:00:00.87 Elapsed: 00:00:00.42
# Mc/sec: 1882.69
//
Query:       KOO22414.1  [L=517]
Description: wd repeat-containing protein 19 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    0.00041   20.6   0.3       0.63   10.4   0.0    3.4  4  ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain
  ------ inclusion threshold ------
      0.012   14.5   0.2      0.019   13.9   0.2    1.2  1  PALB2_WD40   Partner and localizer of BRCA2 WD40 domain
       0.12   10.4   0.1       0.21    9.5   0.1    1.3  1  IKI3         IKI3 family


Domain annotation for each model (and alignments):
>> ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.4   0.0   0.00011      0.63      26      89 ..     131     195 ..     114     198 .. 0.74
   2 !    6.3   0.0     0.002        12      45      89 ..     242     287 ..     233     290 .. 0.79
   3 ?   -2.7   0.0       1.3   7.8e+03      40      65 ..     383     407 ..     368     421 .. 0.76
   4 ?   -2.9   0.0       1.5   8.9e+03      39      60 ..     487     508 ..     459     514 .. 0.76

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00011
  ANAPC4_WD40  26 gqrvwtleedkedsevrsLaWkpdgklLavaysdgevrllda..esgkvvhslsvksekavtclgW 89 
                   +r++++  +  ++   ++aW+p gk++a a s++   +++    +g + +s + +s k    l+W
   KOO22414.1 131 QKRLFKMGPERLGEGKIKFAWRPGGKMIATASSKNGSLVIHLfrRDGSLYNSHTLGSGK-CIWLEW 195
                  5788888777777777789***********99887555555322567777777777774.666666 PP

  == domain 2  score: 6.3 bits;  conditional E-value: 0.002
  ANAPC4_WD40  45 aWkpdgklLavaysdgevrlldaesgkv.vhslsvksekavtclgW 89 
                  +W++  + La+++ +g+v +++  +g + +h+ + k+   vtc +W
   KOO22414.1 242 KWSKVASQLAIGTTQGKVIIFNKAEGVMqLHEKKGKHGAPVTCGDW 287
                  79999999*************9888876255555556667888777 PP

  == domain 3  score: -2.7 bits;  conditional E-value: 1.3
  ANAPC4_WD40  40 evrsLaWkpdgklLavaysdgevrll 65 
                   + +++W p+  +L v+  +g +  +
   KOO22414.1 383 VIAGFQWLPN-LVLLVGLTNGYMVTV 407
                  5677888876.577788888876655 PP

  == domain 4  score: -2.9 bits;  conditional E-value: 1.5
  ANAPC4_WD40  39 sevrsLaWkpdgklLavaysdg 60 
                  +   ++ W  + k +a +  dg
   KOO22414.1 487 HYLDKVDWDDSAKAFACSATDG 508
                  4556788888888888888887 PP

>> PALB2_WD40  Partner and localizer of BRCA2 WD40 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.2   3.1e-06     0.019     291     350 ..     198     262 ..     180     263 .. 0.76

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 3.1e-06
  PALB2_WD40 291 kdqlaaavltsGa.iavWdlllghctal.....llpesdesWslvrWsgtdsqllaGqkdGsvlvy 350
                 k+++   vl  Ga i +Wd++++    l     l+p+  ++ s+ +Ws+  sql  G  +G+v+++
  KOO22414.1 198 KGTSL-GVLQEGAgIFLWDVPMADSEPLnvpmsLAPSITTNASFCKWSKVASQLAIGTTQGKVIIF 262
                 55443.46666654999***99987654223337888899************************98 PP

>> IKI3  IKI3 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   0.1   3.6e-05      0.21     260     330 ..     148     214 ..     130     219 .. 0.80

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 3.6e-05
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXXXXXXXXXXX.XXXX CS
        IKI3 260 aLaWrPsGsliAstqrkkdksldvvfFErNGLrhgefslrlekeeeevqsLaWsadSevLavrledr.vqlw 330
                 + aWrP G++iA++ +k+ + l + +F r G    + +l     + ++  L+W   ++ L v  e   + lw
  KOO22414.1 148 KFAWRPGGKMIATASSKNGS-LVIHLFRRDGSLYNSHTLG----SGKCIWLEWEWKGTSLGVLQEGAgIFLW 214
                 679***********998777.*********9877777775....5788888888888888884433336666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (517 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       427  (0.0238162); expected 358.6 (0.02)
Passed bias filter:                      379  (0.0211389); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.52u 0.22s 00:00:00.74 Elapsed: 00:00:00.36
# Mc/sec: 4299.47
//
Query:       KOO22415.1  [L=176]
Description: hypothetical protein Ctob_000523 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (176 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       240  (0.0133861); expected 358.6 (0.02)
Passed bias filter:                      217  (0.0121033); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.25s 00:00:00.61 Elapsed: 00:00:00.39
# Mc/sec: 1340.73
//
Query:       KOO22416.1  [L=1634]
Description: heat shock protein 91 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.3e-43  147.8   0.0    3.3e-43  147.8   0.0    3.1  2  HSP70     Hsp70 protein
  ------ inclusion threshold ------
      0.027   14.6   0.4         15    5.8   0.0    2.8  3  ParG      ParG


Domain annotation for each model (and alignments):
>> HSP70  Hsp70 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  147.8   0.0   3.7e-47   3.3e-43     171     596 ..     984    1499 ..     981    1502 .. 0.86
   2 ?   -3.7   6.0      0.27   2.4e+03     517     560 ..    1579    1622 ..    1506    1633 .. 0.56

  Alignments for each domain:
  == domain 1  score: 147.8 bits;  conditional E-value: 3.7e-47
                  HHHHHHHHTCCSS....SCEEEEEEEEXSSXEEEEEEEEETTEEEEEEEEEETTXSHHHHHHHHHHHHHHHHHHHHSXXGGGSHHHHHHHHHHHHHH CS
       HSP70  171 TAaalaYGldkkd....kernvlvyDlGggtfdvSilelekGvfevkaTagDthlGGedfDealvehlveefkkkegidlskdkkalqrlkeaaeka 263 
                   A+al Y + ++d     +++v+++D G++  ++ +++  +   ev+a a+     G  +De l+ hl+++f+ + ++d+  +++a +rl++a e++
  KOO22416.1  984 AAIALDYVFGRSDlpesVDHHVVFIDAGHAGVQACVVRARRDSAEVLAHAFAPGTAGAAMDELLCAHLAADFRDRFQVDALAEPRAASRLRQASERV 1080
                  5899999999999998899****************************************************************************** PP

                  HHHTTTSSCSEEEEEEEEEETTTEEEEEEEEHHHHHHHHHHHHHHTHHHHHHHHHHCTEEGGGCSEEEEESGGGGSHHHHHHHHHHTTCHHBSSSHT CS
       HSP70  264 KkeLSsskqteinleietvdedgkdlseklsRakfeelvedllertlepvekalkdaklkkeeidevvlvGGstRiPkvqelvkelfgkepsktvnp 360 
                  ++ LS+  ++e ++ ++++   ++d++++l+R ++e+l  +l++r + ++  a++ a+l    +d+v+l+GG +R P+   +v+ +fg+eps+++n+
  KOO22416.1 1081 RRVLSA--NAESTVALDCLVG-ETDVHGSLTRLQLESLSGPLIDRAMCACLDAVRGAGLVPAALDAVELLGGYSRTPAFIAAVQRAFGREPSRSLNA 1174
                  ******..6777777788887.78************************************************************************* PP

                  TTHHHHHHHHHHHHHCTCGCSHCCEEEE..BESS-EEEEETTTEEEEEESTTCBSSEEEE.EEEEESST.TSSSEEEEE.EESSSSBGGGSEEEEEE CS
       HSP70  361 DeavaiGAAvqagvlsgeeevkdllllD..vtpLslgietlggvmtkliernttiptkks.qvfstaad.nqtaveiev.lqgerelvkdnkllgsf 452 
                   e va+GAA+ ag+ s + ++++l l     ++ s+  e +gg        +  +p+  + +  + +++  +++++i+  +++++++++   +lg+ 
  KOO22416.1 1175 EESVARGAALAAGLRSRTLRMRPLRLHEglLHATSIHWEKEGGGR---PLGCHMLPKAGTvPLLKRITLrTRSRMQISCrYDSSPRQLACRVELGKG 1268
                  **************************9833444455555555432...22355566655555555555414557788772556777777779****9 PP

                  EEECESSCSTTCSEEEEEEEEETTSCEEEEEEET.TTCCEEEEEEECCSS..SBHHHHHH..................................... CS
       HSP70  453 eldgippaprGvpqieVtfdidanGiltvsakdk.etgkeeeitieaseg..lseeeiek..................................... 509 
                  + d+   a+r    ++V + id n + +++a +  +t  + + t+e +    ++++ +e                                      
  KOO22416.1 1269 AGDDASDAARAL--LRVDVLIDDNQLPSIRAYEVtTTTTRLNTTVEVDGVfcAPAAPEETasdgpgnegssgsadsaegtasggaspdetssaaaaa 1363
                  999999887765..56667899********998834444456666666664255555555889********************************** PP

                  ............................................HHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH.GGGSTHHHH.... CS
       HSP70  510 ............................................mvkdaeesaeedkkkkeaieakneaeelvyslekkleee.aekvseaek.... 557 
                                                                  + +++ +d+++++a  akn++e  +y+++++lee+ a ++s++e+    
  KOO22416.1 1364 ahehpvaagakgtaepaapppvmvralevaelsrlglredelkrARDLELSMQRADEAAEKADAAKNDLEGQIYQVRATLEERlAGFASDDERqala 1460
                  ****************************************9885444445677788888888889******************98888877777777 PP

                  HHHHHHHHHHHCHTTSSCHHHHHHHHHHHHHHHHHHHHH CS
       HSP70  558 ekvesaieeLkeeleeeekeeieakteelkkvvekiaek 596 
                  +++e+ + +L+ e+e+++++++e+++e++++++ ++ e+
  KOO22416.1 1461 AQLEACEGWLYGEGEQQSAQRYEHEREAVRASLAPLEER 1499
                  89999999*********************9999888776 PP

  == domain 2  score: -3.7 bits;  conditional E-value: 0.27
                  CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGSTHHHHHHH CS
       HSP70  517 saeedkkkkeaieakneaeelvyslekkleeeaekvseaekekv 560 
                   a++d++k+++++a+++a +    +e++ + ea  + +a+++k 
  KOO22416.1 1579 RAAQDQAKAAQAQAQAQAAQAQAAQEQAAAAEAASAAAATADKA 1622
                  23444444444444444444444444444444333333333333 PP

>> ParG  ParG
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.8   0.0    0.0017        15      25      61 ..     161     197 ..     152     205 .. 0.83
   2 ?   -3.9   0.0       1.8   1.6e+04      51      60 ..     570     579 ..     568     585 .. 0.84
   3 ?    5.7   0.0    0.0019        17      30      56 ..     642     668 ..     637     673 .. 0.83

  Alignments for each domain:
  == domain 1  score: 5.8 bits;  conditional E-value: 0.0017
        ParG  25 vdspvpsGkskrvnvnfdeekhtrfkaacakkGtsit 61 
                 v s  p+ k+  v v++  +    f aaca  G si+
  KOO22416.1 161 VRSSAPALKTIAVAVDLCRNEELDFVAACAAYGISIA 197
                 5677899999999999999999*************97 PP

  == domain 2  score: -3.9 bits;  conditional E-value: 1.8
        ParG  51 aacakkGtsi 60 
                 a ca++G s+
  KOO22416.1 570 AVCARHGISL 579
                 88*****997 PP

  == domain 3  score: 5.7 bits;  conditional E-value: 0.0019
        ParG  30 psGkskrvnvnfdeekhtrfkaacakk 56 
                  + k+  v v++  + h  f aacak+
  KOO22416.1 642 CAIKTIAVAVEMARDSHLDFDAACAKH 668
                 5567778999999************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1634 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1798  (0.100284); expected 358.6 (0.02)
Passed bias filter:                      618  (0.0344693); expected 358.6 (0.02)
Passed Vit filter:                        91  (0.00507558); expected 17.9 (0.001)
Passed Fwd filter:                        13  (0.000725082); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 1.24u 0.31s 00:00:01.55 Elapsed: 00:00:00.49
# Mc/sec: 9956.84
//
Query:       KOO22417.1  [L=625]
Description: hypothetical protein Ctob_000527 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.9e-15   54.6   0.5    2.8e-05   23.4   0.0    4.7  6  EF-hand_1  EF hand
    4.4e-15   54.2   2.6    4.6e-06   26.1   0.0    4.2  4  EF-hand_6  EF-hand domain
    2.1e-12   47.3   0.9    3.7e-09   36.9   0.2    3.9  5  EF-hand_7  EF-hand domain pair
    5.3e-12   45.4   0.1    1.4e-07   31.2   0.1    4.4  5  EF-hand_8  EF-hand domain pair
    8.7e-11   40.8   1.9    0.00027   20.3   0.0    4.4  4  EF-hand_5  EF hand
    0.00072   19.5   0.0       0.86    9.5   0.0    3.2  3  Caleosin   Caleosin related protein
  ------ inclusion threshold ------
       0.01   15.5   0.5        4.8    7.1   0.0    3.4  3  SHOCT      Short C-terminal domain


Domain annotation for each model (and alignments):
>> EF-hand_1  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.0       3.2   8.3e+03      15      22 ..      64      71 ..      64      72 .. 0.89
   2 ?   -2.2   0.0       1.5     4e+03      17      29 .]      88     100 ..      88     100 .. 0.89
   3 !    4.8   0.0    0.0092        23       6      27 ..     183     204 ..     183     206 .. 0.89
   4 ?   -2.3   0.0       1.7   4.3e+03      15      22 ..     449     456 ..     449     459 .. 0.89
   5 !   23.4   0.0   1.1e-08   2.8e-05       4      26 ..     513     535 ..     510     538 .. 0.89
   6 !   20.4   0.4   9.6e-08   0.00025       1      28 [.     546     573 ..     546     574 .. 0.95

  Alignments for each domain:
  == domain 1  score: -3.2 bits;  conditional E-value: 3.2
                SEEEHHHH CS
   EF-hand_1 15 GkIdfeEf 22
                G+I+ eE+
  KOO22417.1 64 GHITVEEY 71
                99****96 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 1.5
                 EEHHHHHHHHHHH CS
   EF-hand_1  17 IdfeEfkellkkl 29 
                 I+ eE+ ++l+kl
  KOO22417.1  88 ITVEEYGSALSKL 100
                 899*****99985 PP

  == domain 3  score: 4.8 bits;  conditional E-value: 0.0092
                 HHHHTTTSSSEEEHHHHHHHHH CS
   EF-hand_1   6 FrefDkDgdGkIdfeEfkellk 27 
                 F+ fD  + G +++ Ef + ++
  KOO22417.1 183 FATFDAKNLGSVSRAEFHKGVA 204
                 899**************98775 PP

  == domain 4  score: -2.3 bits;  conditional E-value: 1.7
                 SEEEHHHH CS
   EF-hand_1  15 GkIdfeEf 22 
                 G+I+++++
  KOO22417.1 449 GYISLDDL 456
                 9*****98 PP

  == domain 5  score: 23.4 bits;  conditional E-value: 1.1e-08
                 HHHHHHTTTSSSEEEHHHHHHHH CS
   EF-hand_1   4 eiFrefDkDgdGkIdfeEfkell 26 
                  +F+  DkDgdG+I++ Ef+++l
  KOO22417.1 513 ALFNSWDKDGDGTITKAEFRRAL 535
                 68999****************98 PP

  == domain 6  score: 20.4 bits;  conditional E-value: 9.6e-08
                 HHHHHHHHHTTTSSSEEEHHHHHHHHHH CS
   EF-hand_1   1 elkeiFrefDkDgdGkIdfeEfkellkk 28 
                 +++e+F+ fD Dg G I+f E+ ++l++
  KOO22417.1 546 DIDELFDSFDSDGGGSISFRELNRMLRR 573
                 69***********************986 PP

>> EF-hand_6  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.5   0.0     0.033        85       5      26 ..     182     203 ..     180     207 .. 0.85
   2 ?   -3.9   0.0         7   1.8e+04      15      22 ..     449     456 ..     448     456 .. 0.89
   3 !   26.1   0.0   1.8e-09   4.6e-06       3      31 .]     512     539 ..     510     539 .. 0.89
   4 !   21.4   0.4   5.8e-08   0.00015       2      28 ..     547     573 ..     546     581 .. 0.91

  Alignments for each domain:
  == domain 1  score: 3.5 bits;  conditional E-value: 0.033
   EF-hand_6   5 aFklfDkdgdGkidaeElrkal 26 
                  F  fD  + G+++++E+ k  
  KOO22417.1 182 HFATFDAKNLGSVSRAEFHKGV 203
                 5999**************9865 PP

  == domain 2  score: -3.9 bits;  conditional E-value: 7
   EF-hand_6  15 GkidaeEl 22 
                 G+i+ ++l
  KOO22417.1 449 GYISLDDL 456
                 9***9997 PP

  == domain 3  score: 26.1 bits;  conditional E-value: 1.8e-09
   EF-hand_6   3 reaFklfDkdgdGkidaeElrkalrkalg 31 
                  ++F+ +DkdgdG+i+++E+r+al  +lg
  KOO22417.1 512 VALFNSWDKDGDGTITKAEFRRALP-ELG 539
                 679********************97.665 PP

  == domain 4  score: 21.4 bits;  conditional E-value: 5.8e-08
   EF-hand_6   2 lreaFklfDkdgdGkidaeElrkalrk 28 
                 ++e+F+ fD dg G+i++ El ++lr+
  KOO22417.1 547 IDELFDSFDSDGGGSISFRELNRMLRR 573
                 789**********************95 PP

>> EF-hand_7  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.0         4     1e+04      18      26 ..      65      73 ..      63     113 .. 0.49
   2 ?    5.0   0.0     0.013        33       7      27 ..     182     202 ..     178     243 .. 0.66
   3 ?   -0.0   0.2      0.49   1.2e+03      45      66 ..     432     456 ..     361     460 .. 0.59
   4 !   17.4   0.0   1.7e-06    0.0044      17      69 ..     449     534 ..     446     535 .. 0.56
   5 !   36.9   0.2   1.4e-12   3.7e-09       7      70 ..     514     571 ..     507     572 .. 0.93

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 4
   EF-hand_7 18 yldkeellr 26
                ++++ee+ +
  KOO22417.1 65 HITVEEYAS 73
                455555433 PP

  == domain 2  score: 5.0 bits;  conditional E-value: 0.013
   EF-hand_7   7 aFkelDtdgdgyldkeellrl 27 
                  F  +D  + g+++++e+++ 
  KOO22417.1 182 HFATFDAKNLGSVSRAEFHKG 202
                 455666666666666665553 PP

  == domain 3  score: -0.0 bits;  conditional E-value: 0.49
   EF-hand_7  45 elellfkefDtdkd...GvisfdEF 66 
                 + e +f+++  ++d   G+is+d++
  KOO22417.1 432 STEIIFHDIEESRDvqeGYISLDDL 456
                 3456677765555443467777775 PP

  == domain 4  score: 17.4 bits;  conditional E-value: 1.7e-06
   EF-hand_7  17 gyldkeellr......llrkifqga...............................gegsklsd.........eelellfkefDtdkdGvisfdEFlkl 69 
                 gy++ ++l                                                +      +         + + +lf+ +D+d+dG+i+  EF+++
  KOO22417.1 449 GYISLDDLSVtvwqktN-------EeiwrmykdaklsetvgdgspgagasrggavvD------QlrsalidqaQRVVALFNSWDKDGDGTITKAEFRRA 534
                 67777776643322220.......233444444445556666666666654333330......23334443334488999999*************976 PP

  == domain 5  score: 36.9 bits;  conditional E-value: 1.4e-12
   EF-hand_7   7 aFkelDtdgdgyldkeellrllrkifqgagegsklsdeelellfkefDtdkdGvisfdEFlkly 70 
                  F++ D+dgdg ++k+e++r+l       + g   ++e +++lf+ fD+d+ G+isf E+ ++ 
  KOO22417.1 514 LFNSWDKDGDGTITKAEFRRALP------ELGMWADPEDIDELFDSFDSDGGGSISFRELNRML 571
                 69********************9......99999999**********************98775 PP

>> EF-hand_8  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.0   0.0     0.001       2.6      33      52 ..     184     203 ..     183     206 .. 0.86
   2 ?   -1.5   0.0      0.91   2.3e+03      22      34 ..     405     417 ..     396     418 .. 0.84
   3 ?   -1.3   0.0      0.82   2.1e+03      40      49 ..     448     457 ..     446     462 .. 0.72
   4 !   12.0   0.0   5.6e-05      0.14      28      49 ..     511     532 ..     508     535 .. 0.87
   5 !   31.2   0.1   5.5e-11   1.4e-07       2      52 ..     523     571 ..     522     574 .. 0.89

  Alignments for each domain:
  == domain 1  score: 8.0 bits;  conditional E-value: 0.001
   EF-hand_8  33 refDtdgdGkisfeEFcvll 52 
                  +fD ++ G +s  EF+  +
  KOO22417.1 184 ATFDAKNLGSVSRAEFHKGV 203
                 58***************865 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 0.91
   EF-hand_8  22 glseeevdilfre 34 
                  ls++++++lf++
  KOO22417.1 405 RLSAHDAHALFKH 417
                 499********97 PP

  == domain 3  score: -1.3 bits;  conditional E-value: 0.82
   EF-hand_8  40 dGkisfeEFc 49 
                  G+is+++  
  KOO22417.1 448 EGYISLDDLS 457
                 5888888764 PP

  == domain 4  score: 12.0 bits;  conditional E-value: 5.6e-05
   EF-hand_8  28 vdilfrefDtdgdGkisfeEFc 49 
                 v +lf+  D dgdG+i++ EF 
  KOO22417.1 511 VVALFNSWDKDGDGTITKAEFR 532
                 7799*****************6 PP

  == domain 5  score: 31.2 bits;  conditional E-value: 5.5e-11
   EF-hand_8   2 kgkItreelrrilrilglkkglseeevdilfrefDtdgdGkisfeEFcvll 52 
                 +g It++e+rr+l  lg+     +e++d+lf+ fD dg G isf E   +l
  KOO22417.1 523 DGTITKAEFRRALPELGMW--ADPEDIDELFDSFDSDGGGSISFRELNRML 571
                 89***********556999..9**********************9976555 PP

>> EF-hand_5  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.0         1   2.6e+03      14      21 ..      64      71 ..      64      74 .. 0.88
   2 ?    2.3   0.0     0.053   1.3e+02       3      23 ..     182     201 ..     180     204 .. 0.82
   3 !   20.3   0.0   1.1e-07   0.00027       2      23 ..     512     533 ..     511     535 .. 0.88
   4 !   13.5   0.8   1.4e-05     0.037       1      24 [.     547     570 ..     547     571 .. 0.91

  Alignments for each domain:
  == domain 1  score: -1.8 bits;  conditional E-value: 1
                SCE-HHHH CS
   EF-hand_5 14 GkIskeEL 21
                G+I++eE 
  KOO22417.1 64 GHITVEEY 71
                99*****6 PP

  == domain 2  score: 2.3 bits;  conditional E-value: 0.053
                 HHHHHH-SS-SSCE-HHHHHH CS
   EF-hand_5   3 dtFqaiDlNgDGkIskeELkt 23 
                 + F  +D+ + G +s+ E+ +
  KOO22417.1 182 H-FATFDAKNLGSVSRAEFHK 201
                 4.888999999*******965 PP

  == domain 3  score: 20.3 bits;  conditional E-value: 1.1e-07
                 HHHHHHH-SS-SSCE-HHHHHH CS
   EF-hand_5   2 kdtFqaiDlNgDGkIskeELkt 23 
                 +++F+  D++gDG+I+k E+++
  KOO22417.1 512 VALFNSWDKDGDGTITKAEFRR 533
                 5789999*************98 PP

  == domain 4  score: 13.5 bits;  conditional E-value: 1.4e-05
                 HHHHHHHH-SS-SSCE-HHHHHHH CS
   EF-hand_5   1 lkdtFqaiDlNgDGkIskeELktl 24 
                 ++++F+ +D +g G Is+ EL ++
  KOO22417.1 547 IDELFDSFDSDGGGSISFRELNRM 570
                 5779*****************997 PP

>> Caleosin  Caleosin related protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.5   0.0       0.1   2.6e+02       8      38 ..     181     211 ..     179     249 .. 0.89
   2 ?    4.2   0.0     0.015        37      13      35 ..     518     540 ..     512     543 .. 0.89
   3 !    9.5   0.0   0.00033      0.86      92     130 ..     544     582 ..     542     595 .. 0.90

  Alignments for each domain:
  == domain 1  score: 1.5 bits;  conditional E-value: 0.1
    Caleosin   8 qHvaFfDrdkdGiiypldtyrgfralgfnvl 38 
                 +H+a fD  + G +   + ++g+  lg+++ 
  KOO22417.1 181 EHFATFDAKNLGSVSRAEFHKGVALLGLSAP 211
                 699***********************99865 PP

  == domain 2  score: 4.2 bits;  conditional E-value: 0.015
    Caleosin  13 fDrdkdGiiypldtyrgfralgf 35 
                 +D+d dG+i+  +  r++ +lg+
  KOO22417.1 518 WDKDGDGTITKAEFRRALPELGM 540
                 *************9999999986 PP

  == domain 3  score: 9.5 bits;  conditional E-value: 0.00033
    Caleosin  92 pqkfeeifskyakekkdaltlkevlellkgqrealDlfg 130
                 p+  +e+f+ ++++  ++++++e++++l++ r + D  +
  KOO22417.1 544 PEDIDELFDSFDSDGGGSISFRELNRMLRRSRSVDDRKS 582
                 78899****************************999766 PP

>> SHOCT  Short C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.1   0.0    0.0019       4.8       4      21 ..      55      72 ..      53      75 .. 0.88
   2 ?   -0.7   0.0      0.52   1.3e+03       3      27 ..      76     100 ..      74     101 .. 0.70
   3 ?    4.5   0.0     0.012        30      13      23 ..     524     534 ..     523     535 .. 0.88

  Alignments for each domain:
  == domain 1  score: 7.1 bits;  conditional E-value: 0.0019
       SHOCT  4 ekLkeLyarGeIteEEFe 21
                  Lk+ +++G It EE+ 
  KOO22417.1 55 GALKAAKEAGHITVEEYA 72
                579**************7 PP

  == domain 2  score: -0.7 bits;  conditional E-value: 0.52
       SHOCT   3 LekLkeLyarGeIteEEFeakKakL 27 
                 L++Lk+ +++  It EE+  +  kL
  KOO22417.1  76 LATLKAAKEAADITVEEYGSALSKL 100
                 6666766666679999997766666 PP

  == domain 3  score: 4.5 bits;  conditional E-value: 0.012
       SHOCT  13 GeIteEEFeak 23 
                 G It++EF+++
  KOO22417.1 524 GTITKAEFRRA 534
                 99******996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (625 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1159  (0.0646439); expected 358.6 (0.02)
Passed bias filter:                      641  (0.0357521); expected 358.6 (0.02)
Passed Vit filter:                        63  (0.00351386); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.66u 0.31s 00:00:00.97 Elapsed: 00:00:00.45
# Mc/sec: 4213.59
//
Query:       KOO22418.1  [L=608]
Description: hypothetical protein Ctob_000526 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.4e-06   26.0   6.3       0.18   12.0   0.1    4.9  5  LRR_6      Leucine Rich repeat
  ------ inclusion threshold ------
       0.22   11.4   0.1       0.43   10.5   0.1    1.4  1  Remorin_C  Remorin, C-terminal region


Domain annotation for each model (and alignments):
>> LRR_6  Leucine Rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.0      0.81   7.3e+03      17      24 .]     211     218 ..     209     218 .. 0.87
   2 ?    3.3   0.0     0.012   1.1e+02       5      16 ..     446     457 ..     443     458 .. 0.85
   3 ?    2.3   0.1     0.026   2.3e+02       2      12 ..     468     478 ..     467     478 .. 0.85
   4 !   12.0   0.1     2e-05      0.18       1      24 []     540     563 ..     540     563 .. 0.96
   5 !    8.1   0.0   0.00033         3       2      18 ..     569     586 ..     568     591 .. 0.91

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 0.81
       LRR_6  17 DeGaeaLa 24 
                 D G++a++
  KOO22418.1 211 DPGVSAIS 218
                 89****96 PP

  == domain 2  score: 3.3 bits;  conditional E-value: 0.012
       LRR_6   5 LteLdLsgNdIg 16 
                 Lt LdLs+ +++
  KOO22418.1 446 LTRLDLSYTQVD 457
                 9******99876 PP

  == domain 3  score: 2.3 bits;  conditional E-value: 0.026
       LRR_6   2 nthLteLdLsg 12 
                 + +Lt+Ld+++
  KOO22418.1 468 SKTLTSLDVRF 478
                 689*****985 PP

  == domain 4  score: 12.0 bits;  conditional E-value: 2e-05
       LRR_6   1 snthLteLdLsgNdIgDeGaeaLa 24 
                 +nt L+ LdLs  d++ eGa+a++
  KOO22418.1 540 HNTVLQDLDLSATDLDSEGATAIM 563
                 89********************96 PP

  == domain 5  score: 8.1 bits;  conditional E-value: 0.00033
       LRR_6   2 nthLteLdLsgNd.IgDe 18 
                 nt L++L+L++N  ++De
  KOO22418.1 569 NTVLKTLQLTFNPrLDDE 586
                 999**********99998 PP

>> Remorin_C  Remorin, C-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.1   4.8e-05      0.43      37      96 ..     112     180 ..     109     185 .. 0.83

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 4.8e-05
   Remorin_C  37 kakaeaelrklee.........klEkkrakaleklknklariekkAeekRasaeakrreeelktkekan 96 
                 k+++e+ l++l           k E  r+++lek+  k a i  +A  ++ ++  +r +  +k+ e a+
  KOO22418.1 112 KMTIEMDLNELNHakllfatgtKYEDARSSYLEKFCPKYANITDEATLMQLQVADQRVSVRAKVLEVAE 180
                 55566666666656667777779**********************************999999988776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (608 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       430  (0.0239835); expected 358.6 (0.02)
Passed bias filter:                      378  (0.0210832); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.55u 0.25s 00:00:00.80 Elapsed: 00:00:00.41
# Mc/sec: 4468.40
//
Query:       KOO22419.1  [L=357]
Description: hypothetical protein Ctob_000514 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (357 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       544  (0.0303419); expected 358.6 (0.02)
Passed bias filter:                      368  (0.0205254); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.46u 0.21s 00:00:00.67 Elapsed: 00:00:00.37
# Mc/sec: 2908.00
//
Query:       KOO22420.1  [L=825]
Description: tetratricopeptide repeat domain containing protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.3e-09   38.1  34.4      0.036   14.9   0.9   10.1 12  TPR_14    Tetratricopeptide repeat
    9.3e-09   35.7  12.2     0.0011   19.4   0.1    6.6  9  TPR_19    Tetratricopeptide repeat
    2.3e-05   24.6   0.0      0.016   15.2   0.0    3.1  3  Suf       Suppressor of forked protein (Suf)
    0.00096   19.1  14.7        2.2    8.6   0.4    6.8  7  TPR_2     Tetratricopeptide repeat
     0.0061   15.8   2.1          2    7.6   0.1    2.5  2  FAT       FAT domain
  ------ inclusion threshold ------
      0.011   16.1   0.2    1.5e+02    3.1   0.0    5.9  7  TPR_17    Tetratricopeptide repeat
      0.039   14.6  19.4        4.3    8.1   0.4    6.0  6  TPR_16    Tetratricopeptide repeat
       0.82    9.5   5.1        3.3    7.6   0.4    2.9  3  DUF3703   Protein of unknown function (DUF3703)
       0.87    9.8  11.0         16    5.7   0.1    4.6  4  TPR_9     Tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> TPR_14  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.4   0.1      0.18   3.6e+02      18      44 .]     228     256 ..     211     256 .. 0.77
   2 !   14.9   0.9   1.8e-05     0.036       2      43 ..     248     289 ..     247     290 .. 0.94
   3 !    6.9   0.1    0.0069        14       2      37 ..     282     317 ..     281     323 .. 0.86
   4 ?    4.2   0.1     0.048        95       5      24 ..     319     338 ..     314     343 .. 0.81
   5 ?    5.3   0.2     0.022        43       8      41 ..     357     390 ..     350     393 .. 0.84
   6 ?   -1.4   0.0         3   5.9e+03       6      39 ..     389     422 ..     386     428 .. 0.76
   7 ?   -2.2   0.0       5.4   1.1e+04       4      30 ..     421     447 ..     419     451 .. 0.77
   8 !    9.8   0.3   0.00076       1.5       2      38 ..     459     497 ..     458     503 .. 0.78
   9 !   10.9   0.3   0.00033      0.66       3      38 ..     496     531 ..     494     536 .. 0.79
  10 !    8.0   0.0    0.0029       5.8       7      44 .]     536     573 ..     529     573 .. 0.86
  11 ?    5.4   0.6      0.02        39       3      44 .]     566     607 ..     564     607 .. 0.91
  12 ?   -0.9   0.0       2.1   4.3e+03      21      43 ..     617     639 ..     614     640 .. 0.85

  Alignments for each domain:
  == domain 1  score: 2.4 bits;  conditional E-value: 0.18
      TPR_14  18 deAiallrralalaPdd..aeawlllaql 44 
                 + A +l+rr+la  P+   ++++l++a+l
  KOO22420.1 228 AHASELARRCLAELPSTvhWRVHLEMADL 256
                 66999**********88557888999875 PP

  == domain 2  score: 14.9 bits;  conditional E-value: 1.8e-05
      TPR_14   2 eallalaeallalGdpdeAiallrralalaPddaeawlllaq 43 
                 +++l++a++  +   + eA++l+rra    P+ a++wl++a+
  KOO22420.1 248 RVHLEMADLAKREKSFGEARRLYRRATIEMPTAAQTWLEYAK 289
                 67899*********************9999**********98 PP

  == domain 3  score: 6.9 bits;  conditional E-value: 0.0069
      TPR_14   2 eallalaeallalGdpdeAiallrralalaPddaea 37 
                 + +l++a+ ++++G +++  ++l + l  +P ++++
  KOO22420.1 282 QTWLEYAKMEEERGHFERCHKILTAGLHYCPYHEAL 317
                 68***********************99888887665 PP

  == domain 4  score: 4.2 bits;  conditional E-value: 0.048
      TPR_14   5 lalaeallalGdpdeAiall 24 
                 l++ + l++ G++d+A+all
  KOO22420.1 319 LKAIKHLERMGKLDKARALL 338
                 5677899***********98 PP

  == domain 5  score: 5.3 bits;  conditional E-value: 0.022
      TPR_14   8 aeallalGdpdeAiallrralalaPddaeawlll 41 
                 a +++++ ++++A+++++ +l++aP+   +w + 
  KOO22420.1 357 ALLEARASQTATARRIFKFLLQQAPWYGPVWHEA 390
                 55678999******************99999776 PP

  == domain 6  score: -1.4 bits;  conditional E-value: 3
      TPR_14   6 alaeallalGdpdeAiallrralalaPddaeawl 39 
                 ++ +++ +   + eA+++++  l + P    +w+
  KOO22420.1 389 EACRFEQRCSHLHEALRIAELGLNQLPRYGPLWF 422
                 5556777788899999999999999998777775 PP

  == domain 7  score: -2.2 bits;  conditional E-value: 5.4
      TPR_14   4 llalaeallalGdpdeAiallrralal 30 
                 +  ++++++    p+e +++ r+++++
  KOO22420.1 421 WFSALRLYESTSTPQELLRATRALVDR 447
                 666778888888899999998888776 PP

  == domain 8  score: 9.8 bits;  conditional E-value: 0.00076
      TPR_14   2 eallalaeallalGdpdeAiallrralala.Pdd.aeaw 38 
                 +++ + a++++++G +++A+a++ r +a + P+  + +w
  KOO22420.1 459 KLWFECAQLEERNGHLQRARAAYVRSVANCaPNLrWKVW 497
                 7899*********************99986244213455 PP

  == domain 9  score: 10.9 bits;  conditional E-value: 0.00033
      TPR_14   3 allalaeallalGdpdeAiallrralalaPddaeaw 38 
                 ++l  a+ +l+ G++++A all+ra a  P   +a+
  KOO22420.1 496 VWLGGARTELTHGQFEAAHALLERAHAESPPKTRAL 531
                 56777899999****************998444444 PP

  == domain 10  score: 8.0 bits;  conditional E-value: 0.0029
      TPR_14   7 laeallalGdpdeAiallrralalaPddaeawlllaql 44 
                   ++++  G+ d+A++ll+ a +++ +++ + l+ +ql
  KOO22420.1 536 QSRLHELCGNIDTARKLLKGARRTNGQEWKVFLEAVQL 573
                 56788999*******************99998887775 PP

  == domain 11  score: 5.4 bits;  conditional E-value: 0.02
      TPR_14   3 allalaeallalGdpdeAiallrralalaPddaeawlllaql 44 
                 + l++++++ + + + +A++ +r+al+ + +  ++w  l ql
  KOO22420.1 566 VFLEAVQLEVRCQALPRALREARKALDVHRGTGRLWAVLIQL 607
                 6788999999***************************99986 PP

  == domain 12  score: -0.9 bits;  conditional E-value: 2.1
      TPR_14  21 iallrralalaPddaeawlllaq 43 
                 +a++++al   P++ e+w + a+
  KOO22420.1 617 LAVFQQALLEVPKSGEVWCEGAR 639
                 57999***99*******987766 PP

>> TPR_19  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.8   0.0     0.083   1.7e+02      15      56 ..     235     278 ..     228     290 .. 0.60
   2 !    7.3   0.0    0.0034       6.8       4      50 ..     260     306 ..     257     309 .. 0.92
   3 !    8.6   0.0    0.0013       2.6       4      51 ..     294     341 ..     293     344 .. 0.88
   4 ?    4.1   0.0     0.034        68       5      61 ..     364     421 ..     358     427 .. 0.81
   5 ?   -3.3   0.0       6.9   1.4e+04      31      47 ..     464     480 ..     459     485 .. 0.71
   6 !   19.4   0.1   5.6e-07    0.0011       4      57 ..     507     562 ..     504     573 .. 0.92
   7 ?   -3.5   0.0       7.9   1.6e+04      10      29 ..     583     602 ..     576     607 .. 0.58
   8 ?   -1.2   0.0       1.5     3e+03      11      35 ..     617     641 ..     617     643 .. 0.79
   9 ?    1.4   0.1      0.24   4.7e+02       6      36 ..     650     680 ..     649     688 .. 0.88

  Alignments for each domain:
  == domain 1  score: 2.8 bits;  conditional E-value: 0.083
      TPR_19  15 eqalqedpk..naearllLAeallalgqldeAealLdalpeedp 56 
                 ++ l+e p   ++++ l +A++    + + eA++l  ++  e p
  KOO22420.1 235 RRCLAELPStvHWRVHLEMADLAKREKSFGEARRLYRRATIEMP 278
                 55666666666666666777777777777777766666554444 PP

  == domain 2  score: 7.3 bits;  conditional E-value: 0.0034
      TPR_19   4 egdyaeAlalleqalqedpknaearllLAeallalgqldeAealLda 50 
                 e+ + eA +l+++a  e p  a  +l +A+   + g+++   ++L a
  KOO22420.1 260 EKSFGEARRLYRRATIEMPTAAQTWLEYAKMEEERGHFERCHKILTA 306
                 67899**********************************99999976 PP

  == domain 3  score: 8.6 bits;  conditional E-value: 0.0013
      TPR_19   4 egdyaeAlalleqalqedpknaearllLAeallalgqldeAealLdal 51 
                 +g +++ +++l++ l + p ++++ l  ++ l  +g ld+A+alL +l
  KOO22420.1 294 RGHFERCHKILTAGLHYCPYHEALMLKAIKHLERMGKLDKARALLGKL 341
                 56677778999999999****************************887 PP

  == domain 4  score: 4.1 bits;  conditional E-value: 0.034
      TPR_19   5 gdyaeAlalleqalqedpknaearllLAeallalgqldeAealLdalpeedpdd.ary 61 
                  + a A ++++ +lq++p ++ ++   ++      +l eA ++ +  +++ p   + +
  KOO22420.1 364 SQTATARRIFKFLLQQAPWYGPVWHEACRFEQRCSHLHEALRIAELGLNQLPRYgPLW 421
                 58999******************99999998888888888888877777777655555 PP

  == domain 5  score: -3.3 bits;  conditional E-value: 6.9
      TPR_19  31 LAeallalgqldeAeal 47 
                  A++   +g+l+ A+a+
  KOO22420.1 464 CAQLEERNGHLQRARAA 480
                 57777777888888764 PP

  == domain 6  score: 19.4 bits;  conditional E-value: 5.6e-07
      TPR_19   4 egdyaeAlalleqalqedpknaearllL..AeallalgqldeAealLdalpeedpd 57 
                  g++++A+alle+a +e+p   +a+  L   +++   g++d A++lL+ + + + +
  KOO22420.1 507 HGQFEAAHALLERAHAESPPKTRALVMLeqSRLHELCGNIDTARKLLKGARRTNGQ 562
                 69************************9999******************99888776 PP

  == domain 7  score: -3.5 bits;  conditional E-value: 7.9
      TPR_19  10 Alalleqalqedpknaearl 29 
                 Al+  ++al+   + +++++
  KOO22420.1 583 ALREARKALDVHRGTGRLWA 602
                 55555556665555555555 PP

  == domain 8  score: -1.2 bits;  conditional E-value: 1.5
      TPR_19  11 lalleqalqedpknaearllLAeal 35 
                 la ++qal e pk++e++   A+++
  KOO22420.1 617 LAVFQQALLEVPKSGEVWCEGARIC 641
                 5789**********99986666555 PP

  == domain 9  score: 1.4 bits;  conditional E-value: 0.24
      TPR_19   6 dyaeAlalleqalqedpknaearllLAeall 36 
                 ++a+A ++le a++  p++++  + + ++++
  KOO22420.1 650 NLAAAKNFLEFAIEFTPQYGDSFIEYLRLQM 680
                 589******************9999988887 PP

>> Suf  Suppressor of forked protein (Suf)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.0   8.1e-06     0.016       7     120 ..     253     397 ..     248     417 .. 0.77
   2 ?   -1.0   0.0      0.69   1.4e+03      88     124 ..     440     475 ..     438     480 .. 0.88
   3 !    5.3   0.0    0.0085        17      17      50 ..     546     579 ..     535     594 .. 0.90

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 8.1e-06
         Suf   7 ymrasrRaeGikgaRkvFkkARkkprltyevyvasAllEyyiskdkkvAtkIFelGlKkFpedeefvlkYldyLislnddnnaRvlfekvvsklskeke 105
                     ++R +   +aR  + +A  +  +  + + + A +E      ++  +kI+  Gl   p +e+ +lk +++L ++ + ++aR+l+ k+   + ++  
  KOO22420.1 253 MADLAKREKSFGEARRLYRRATIEMPTAAQTWLEYAKMEEERGHFER-CHKILTAGLHYCPYHEALMLKAIKHLERMGKLDKARALLGKLAPVPISQCW 350
                 556789*********************************99666566.**************************************9998877555544 PP

         Suf 106 ................................akelykkfleyestf 120
                                                   ++++   ++e++ 
  KOO22420.1 351 rtvlegallearasqtatarrifkfllqqapwYGPVWHEACRFEQRC 397
                 57777888888888888844444444444444444444444444444 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 0.69
         Suf  88 naRvlfekvvsklskekeakelykkfleyestfgdls 124
                  +R+l ++ v+++sk+    +l+   ++ e + g l+
  KOO22420.1 440 ATRALVDRGVKHISKDL-VWKLWFECAQLEERNGHLQ 475
                 58***************.9999999999999998886 PP

  == domain 3  score: 5.3 bits;  conditional E-value: 0.0085
         Suf  17 ikgaRkvFkkARkkprltyevyvasAllEyyisk 50 
                 i  aRk  k AR ++   ++v+ ++ +lE  ++ 
  KOO22420.1 546 IDTARKLLKGARRTNGQEWKVFLEAVQLEVRCQA 579
                 789**************************99876 PP

>> TPR_2  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.7   0.0    0.0021       4.3       2      33 ..     248     279 ..     247     280 .. 0.89
   2 ?    0.4   0.1      0.47   9.4e+02       2      32 ..     282     312 ..     281     314 .. 0.84
   3 ?    1.5   0.1      0.21   4.1e+02      11      26 ..     325     340 ..     321     342 .. 0.85
   4 !    8.6   0.4    0.0011       2.2       2      28 ..     459     485 ..     458     488 .. 0.91
   5 ?    4.5   0.0     0.024        47      14      32 ..     507     525 ..     501     526 .. 0.87
   6 ?   -1.2   0.0       1.5   3.1e+03       5      25 ..     534     554 ..     530     560 .. 0.79
   7 ?   -3.9   0.0         9   1.8e+04      20      28 ..     583     591 ..     581     592 .. 0.63

  Alignments for each domain:
  == domain 1  score: 7.7 bits;  conditional E-value: 0.0021
       TPR_2   2 ealynlGlayyklgdyeeAleafekAleldPn 33 
                 +++ ++++++ + + + eA++++++A    P+
  KOO22420.1 248 RVHLEMADLAKREKSFGEARRLYRRATIEMPT 279
                 5788999*******************888776 PP

  == domain 2  score: 0.4 bits;  conditional E-value: 0.47
       TPR_2   2 ealynlGlayyklgdyeeAleafekAleldP 32 
                 + + + ++  +++g++e++++ + + l ++P
  KOO22420.1 282 QTWLEYAKMEEERGHFERCHKILTAGLHYCP 312
                 678899999999*******999998888887 PP

  == domain 3  score: 1.5 bits;  conditional E-value: 0.21
       TPR_2  11 yyklgdyeeAleafek 26 
                 ++++g++++A++++ k
  KOO22420.1 325 LERMGKLDKARALLGK 340
                 6899*******98866 PP

  == domain 4  score: 8.6 bits;  conditional E-value: 0.0011
       TPR_2   2 ealynlGlayyklgdyeeAleafekAl 28 
                 +++++ +++ +++g++++A++a+ +++
  KOO22420.1 459 KLWFECAQLEERNGHLQRARAAYVRSV 485
                 78*********************9876 PP

  == domain 5  score: 4.5 bits;  conditional E-value: 0.024
       TPR_2  14 lgdyeeAleafekAleldP 32 
                  g++e A++++e+A +  P
  KOO22420.1 507 HGQFEAAHALLERAHAESP 525
                 79************99887 PP

  == domain 6  score: -1.2 bits;  conditional E-value: 1.5
       TPR_2   5 ynlGlayyklgdyeeAleafe 25 
                  ++ ++++  g+ + A+++++
  KOO22420.1 534 LEQSRLHELCGNIDTARKLLK 554
                 5677889999*******9987 PP

  == domain 7  score: -3.9 bits;  conditional E-value: 9
       TPR_2  20 AleafekAl 28 
                 Al+  +kAl
  KOO22420.1 583 ALREARKAL 591
                 666666666 PP

>> FAT  FAT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.5   0.2    0.0011       2.1     131     178 ..     271     312 ..     205     338 .. 0.80
   2 !    7.6   0.1   0.00099         2     132     206 ..     479     549 ..     440     634 .. 0.82

  Alignments for each domain:
  == domain 1  score: 7.5 bits;  conditional E-value: 0.0011
                 TCCCHCCCHCHCCS-STTCCCCCCCCHCHHHHCCSTTHHCCCCCHCTT CS
         FAT 131 RslvlspiedllkgvkaemwlkfanlarksgrlslAekaLkelleedp 178
                 R+  +++         a++wl++a+   + g+++ ++k L+  l++ p
  KOO22420.1 271 RRATIEMPTA------AQTWLEYAKMEEERGHFERCHKILTAGLHYCP 312
                 4444444444......89999999999999999999999987776666 PP

  == domain 2  score: 7.6 bits;  conditional E-value: 0.00099
                 CCCHCCCHCHCCS-STTCCCCCCCCHCHHHHCCSTTHHCCCCCHCTT.....TT.TSSCCCHHHHHHHCCHHHHH CS
         FAT 132 slvlspiedllkgvkaemwlkfanlarksgrlslAekaLkelleedpeewlprappevvyaylKylwssgeqkea 206
                 + ++ +  +++ + + ++wl  a+    +g+++ A+ +L +++ e+p    p++   v+++++++    g+++ a
  KOO22420.1 479 AAYVRSVANCAPNLRWKVWLGGARTELTHGQFEAAHALLERAHAESP----PKTRALVMLEQSRLHELCGNIDTA 549
                 444544444566677899*****************************....666679999999987666665555 PP

>> TPR_17  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.6   0.0      0.11   2.2e+02      10      34 .]     278     302 ..     269     302 .. 0.84
   2 ?    3.1   0.0     0.076   1.5e+02      14      34 .]     459     479 ..     454     479 .. 0.90
   3 ?    0.1   0.0      0.66   1.3e+03       7      33 ..     487     514 ..     481     515 .. 0.83
   4 ?   -3.3   0.0       8.3   1.6e+04      17      34 .]     534     551 ..     530     551 .. 0.73
   5 ?    0.3   0.0      0.58   1.2e+03       2      23 ..     620     641 ..     619     644 .. 0.85
   6 ?   -3.3   0.0       8.2   1.6e+04       5      17 ..     661     673 ..     661     675 .. 0.84
   7 ?   -0.8   0.0       1.3   2.6e+03       4      17 ..     695     708 ..     692     709 .. 0.85

  Alignments for each domain:
  == domain 1  score: 2.6 bits;  conditional E-value: 0.11
      TPR_17  10 PnnadaynnLAelllknGdlmtArq 34 
                 P+ a  + ++A+  +++G ++++++
  KOO22420.1 278 PTAAQTWLEYAKMEEERGHFERCHK 302
                 89999***************99985 PP

  == domain 2  score: 3.1 bits;  conditional E-value: 0.076
      TPR_17  14 daynnLAelllknGdlmtArq 34 
                 +++++ A+l ++nG l++Ar+
  KOO22420.1 459 KLWFECAQLEERNGHLQRARA 479
                 679999*************95 PP

  == domain 3  score: 0.1 bits;  conditional E-value: 0.66
      TPR_17   7 eldPnn.adaynnLAelllknGdlmtAr 33 
                  + Pn  ++++   A++ l  G+++ A+
  KOO22420.1 487 NCAPNLrWKVWLGGARTELTHGQFEAAH 514
                 45688779999999**********9998 PP

  == domain 4  score: -3.3 bits;  conditional E-value: 8.3
      TPR_17  17 nnLAelllknGdlmtArq 34 
                  +  +l++  G+ +tAr+
  KOO22420.1 534 LEQSRLHELCGNIDTARK 551
                 555677788999999986 PP

  == domain 5  score: 0.3 bits;  conditional E-value: 0.58
      TPR_17   2 ylkaleldPnnadaynnLAell 23 
                 +++al   P++ +++++ A++ 
  KOO22420.1 620 FQQALLEVPKSGEVWCEGARIC 641
                 78999999********988775 PP

  == domain 6  score: -3.3 bits;  conditional E-value: 8.2
      TPR_17   5 aleldPnnadayn 17 
                 a+e  P + d++ 
  KOO22420.1 661 AIEFTPQYGDSFI 673
                 89*****999976 PP

  == domain 7  score: -0.8 bits;  conditional E-value: 1.3
      TPR_17   4 kaleldPnnadayn 17 
                  ++  +Pn+  +++
  KOO22420.1 695 LCINAEPNYGTLWF 708
                 5999*****99998 PP

>> TPR_16  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.1   0.4    0.0022       4.3       2      47 ..     252     294 ..     223     299 .. 0.61
   2 ?   -1.2   0.1       1.7   3.3e+03       3      20 ..     321     338 ..     314     342 .. 0.73
   3 ?    6.8   0.1    0.0055        11      36      65 ..     460     490 ..     440     492 .. 0.83
   4 ?    7.1   0.1    0.0044       8.7       4      61 ..     501     557 ..     498     563 .. 0.73
   5 ?   -1.4   0.1         2     4e+03      15      32 ..     582     599 ..     578     612 .. 0.63
   6 ?    2.4   0.2      0.13   2.5e+02      18      49 ..     738     769 ..     737     787 .. 0.86

  Alignments for each domain:
  == domain 1  score: 8.1 bits;  conditional E-value: 0.0022
      TPR_16   2 alaraalragdyddAaaaleaalkrdpssPdaaeAllllgdaalrq 47 
                 ++a++a r + + +A++++++a+      P aa+ +l+++ +  ++
  KOO22420.1 252 EMADLAKREKSFGEARRLYRRATIEM---PTAAQTWLEYAKMEEER 294
                 34555555555666666666666555...55666666665555555 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 1.7
      TPR_16   3 laraalragdyddAaaal 20 
                 + + + r g+ d+A+a+l
  KOO22420.1 321 AIKHLERMGKLDKARALL 338
                 455677888888888876 PP

  == domain 3  score: 6.8 bits;  conditional E-value: 0.0055
      TPR_16  36 AllllgdaalrqgrlaeAa.alyraalraap 65 
                  +++ +++  r+g l++A+ a++r+ + +ap
  KOO22420.1 460 LWFECAQLEERNGHLQRARaAYVRSVANCAP 490
                 6888899999*********777776655555 PP

  == domain 4  score: 7.1 bits;  conditional E-value: 0.0044
      TPR_16   4 araalragdyddAaaaleaalkrdpssPd.aaeAllllgdaalrqgrlaeAaalyraal 61 
                 ar  l +g++++A a+le+a +  p  P  +a  +l+  +++   g+ + A+ l++ a 
  KOO22420.1 501 ARTELTHGQFEAAHALLERAHAESP--PKtRALVMLEQSRLHELCGNIDTARKLLKGAR 557
                 788999***********99988884..65555555555555555588888887777765 PP

  == domain 5  score: -1.4 bits;  conditional E-value: 2
      TPR_16  15 dAaaaleaalkrdpssPd 32 
                 +A++ ++ al+ ++++ +
  KOO22420.1 582 RALREARKALDVHRGTGR 599
                 677777777777744333 PP

  == domain 6  score: 2.4 bits;  conditional E-value: 0.13
      TPR_16  18 aaleaalkrdpssPdaaeAllllgdaalrqgr 49 
                 +++++a +r+ s+ ++a A+ + + ++     
  KOO22420.1 738 HVYQTAMRRHDSPAFRAIAAEAVAAVLRSTEA 769
                 789*******9999999999999999876655 PP

>> DUF3703  Protein of unknown function (DUF3703)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.6   0.4    0.0017       3.3      36      65 ..     238     267 ..     204     285 .. 0.72
   2 ?   -2.1   0.1       1.7   3.4e+03      12      35 ..     279     302 ..     269     323 .. 0.74
   3 ?    3.1   0.1      0.04        79      14      34 ..     501     521 ..     494     528 .. 0.89

  Alignments for each domain:
  == domain 1  score: 7.6 bits;  conditional E-value: 0.0017
     DUF3703  36 lgqrslllHtrvHwamLrlalrqkdlkEvl 65 
                 l+      H+rvH++m  la r+k++ E++
  KOO22420.1 238 LAELPSTVHWRVHLEMADLAKREKSFGEAR 267
                 55555678******************9986 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 1.7
     DUF3703  12 eaakealakgdlekawrhLeraHi 35 
                 +aa++ l+ +++e++  h+er+H 
  KOO22420.1 279 TAAQTWLEYAKMEEERGHFERCHK 302
                 456667778888889999999994 PP

  == domain 3  score: 3.1 bits;  conditional E-value: 0.04
     DUF3703  14 akealakgdlekawrhLeraH 34 
                 a+++l++g++e+a + LeraH
  KOO22420.1 501 ARTELTHGQFEAAHALLERAH 521
                 789999*************** PP

>> TPR_9  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.7   0.1    0.0082        16       5      60 ..     257     312 ..     254     325 .. 0.84
   2 ?    1.1   0.1      0.22   4.4e+02      27      60 ..     348     381 ..     319     409 .. 0.85
   3 ?    5.6   0.3    0.0086        17      29      59 ..     458     488 ..     454     493 .. 0.89
   4 ?    0.9   0.1      0.25     5e+02      40      71 ..     505     536 ..     493     538 .. 0.80

  Alignments for each domain:
  == domain 1  score: 5.7 bits;  conditional E-value: 0.0082
       TPR_9   5 aireedweralavverllllaPddpeerrdRGlllaqlGclsaAladLeaylalap 60 
                 a re+ + +a + + r  +  P +++ +++ + +++++G+++   + L a l+ +p
  KOO22420.1 257 AKREKSFGEARRLYRRATIEMPTAAQTWLEYAKMEEERGHFERCHKILTAGLHYCP 312
                 67899999999999999999*********************987777766666666 PP

  == domain 2  score: 1.1 bits;  conditional E-value: 0.22
       TPR_9  27 ddpeerrdRGlllaqlGclsaAladLeaylalap 60 
                 + ++ +++ +ll+a+  ++++A++ +   l++ap
  KOO22420.1 348 QCWRTVLEGALLEARASQTATARRIFKFLLQQAP 381
                 5688899999*************99999999988 PP

  == domain 3  score: 5.6 bits;  conditional E-value: 0.0086
       TPR_9  29 peerrdRGlllaqlGclsaAladLeaylala 59 
                 + ++++ ++l+++ G+l+ A+a+  + +a++
  KOO22420.1 458 WKLWFECAQLEERNGHLQRARAAYVRSVANC 488
                 789******************9988877776 PP

  == domain 4  score: 0.9 bits;  conditional E-value: 0.25
       TPR_9  40 aqlGclsaAladLeaylalapdapdaeairaq 71 
                    G+++aA a Le++ a +p    a  + +q
  KOO22420.1 505 LTHGQFEAAHALLERAHAESPPKTRALVMLEQ 536
                 5679*************999977777766655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (825 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       529  (0.0295053); expected 358.6 (0.02)
Passed bias filter:                      408  (0.0227564); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                        13  (0.000725082); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.73u 0.29s 00:00:01.02 Elapsed: 00:00:00.50
# Mc/sec: 5010.87
//
Query:       KOO22421.1  [L=1127]
Description: ATP-dependent RNA helicase dob1 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
      9e-45  152.3   0.1    1.8e-43  148.1   0.0    2.4  2  DSHCT           DSHCT (NUC185) domain
      5e-30  105.3   0.0      1e-29  104.3   0.0    1.5  1  rRNA_proc-arch  rRNA-processing arch domain
    1.8e-16   60.4   0.0    3.7e-16   59.4   0.0    1.5  1  DEAD            DEAD/DEAH box helicase
    5.9e-07   29.8   0.0    1.4e-06   28.6   0.0    1.7  1  Helicase_C      Helicase conserved C-terminal domain
    3.5e-06   27.1   0.0    5.7e-06   26.4   0.0    1.3  1  ResIII          Type III restriction enzyme, res subunit
  ------ inclusion threshold ------
      0.015   15.6   0.1      0.066   13.5   0.0    2.2  3  AAA_22          AAA domain
       0.13   12.3   1.1       0.97    9.4   0.2    2.6  2  SSI             Subtilisin inhibitor-like


Domain annotation for each model (and alignments):
>> DSHCT  DSHCT (NUC185) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.4   0.0     0.087   2.2e+02     115     132 ..     584     601 ..     570     609 .. 0.89
   2 !  148.1   0.0   6.8e-47   1.8e-43       1     164 []     948    1120 ..     948    1120 .. 0.94

  Alignments for each domain:
  == domain 1  score: 1.4 bits;  conditional E-value: 0.087
       DSHCT 115 ldeGdiVRllrrleellr 132
                 l+ G +VR++ rl+e l+
  KOO22421.1 584 LQPGRLVRVVERLDERLD 601
                 678************886 PP

  == domain 2  score: 148.1 bits;  conditional E-value: 6.8e-47
       DSHCT    1 entvtlkGrvaaeirsedeLlltellfsgvlddlepeelaAllsalvfeekredeeekepklseeleealeelkeiaeriakvs...........ve 86  
                  en+v+lkGr+aae++  deLl +el++ g ++dl+p++ +Al++ l+  ++++ + ++     ++l+  +  l+e+a+ +a v            + 
  KOO22421.1  948 ENVVQLKGRAAAELEACDELLASELILAGTFNDLSPAAAVALCAPLIAPDHEKVKRVT--PPHADLAPGYMALQEAARTLAGVLndagfptveaeFV 1042
                  589*********************************************9997666654..4488999999999********9889********9955 PP

       DSHCT   87 srldlglvevvyaWakgasfaellektdldeGdiVRllrrleellrqlakaakvigneeLkkkaeeaielikRdiVfa 164 
                   +++ gl +vv+aWakga+f+el++++dl+eG+i+R++rr+ ell+++++aak+igneeL++k++e  +li+RdiVfa
  KOO22421.1 1043 AKFEGGLLNVVFAWAKGAKFSELCDMCDLFEGSIIRCIRRISELLDEMQSAAKAIGNEELYRKFNEGAKLIRRDIVFA 1120
                  569*************************************************************************96 PP

>> rRNA_proc-arch  rRNA-processing arch domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  104.3   0.0     4e-33     1e-29       3     199 ..     514     757 ..     512     794 .. 0.79

  Alignments for each domain:
  == domain 1  score: 104.3 bits;  conditional E-value: 4e-33
                     HHHHSHHHHHHHHHHHHHHHHHHHHHHHHHTC--TTHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHGGG--TTEEEEEEE.........TTTEE CS
  rRNA_proc-arch   3 MlerSFsqfqnqkslpelekklkeleeelksitiedeedieeyyklrqqleelreeirkiltkpknilpfLqpGRlvrvks.........nddld 88 
                     + +rSF  fq + ++pel  +  +l +e +++t +d +++e+   lr++   l+e++++++++pk++l+fLqpGRlvrv++              
      KOO22421.1 514 LVRRSFWAFQRAHAVPELHSRRHALLAEAAALTQPDDAQLEQLALLRETRRALEERVMEVALQPKHALRFLQPGRLVRVVErlderldarA---- 604
                     679*********************************99******************************************98866555551.... PP

                     EE........................................EEEEEEEEE-SSS..T.TB-..--TCTTEEEEEEEEEEETTS-GGG--TT--S CS
  rRNA_proc-arch  89 fg........................................wGivlnfkkrnkn..skeee..asdeesyvVdvllvlsenskrkdedgeksee 139
                                                               wG+v+ f+  n++  +  e   as+ +++vVdvll+++++ ++         +
      KOO22421.1 605 -AtqghggeggadggglggaacereggvgavvgaipceldrgWGVVVGFRHLNNRliT-DELvaASSRQDFVVDVLLPCAPGAAA-------LAA 690
                     .05555566666666777888888888888888888888888*******833444542.33364555566************543.......344 PP

                     --TT--B-TT..S-EEEEEEEEEGGGEEEEEEEEE---SSTTSTTHHHHHHHHHHHHHH.......H CS
  rRNA_proc-arch 140 saeelkPkagdrekgevevvpvplkcieaiSsvrlklpkdlrkseareevakavqelkr.......r 199
                     s++ +kP++  ++++e +v+pv  + + ++S+ rl lp dlr+s+are + +a+++l+        +
      KOO22421.1 691 SGDVPKPAKLSDSSAEAHVLPVRFDMVRRLSAARLWLPVDLRSSHAREVCLEAMRQLLClpsrlgsH 757
                     45555554334567788**************************************987655555541 PP

>> DEAD  DEAD/DEAH box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.4   0.0   1.4e-19   3.7e-16       3     170 ..      72     218 ..      70     223 .. 0.87

  Alignments for each domain:
  == domain 1  score: 59.4 bits;  conditional E-value: 1.4e-19
                 HHHHHHHHHHTTCEEEEEESTTSSHHHHHHHHHHHHHHHSTTSTS-EEEEEESSHHHHHHHHHHHHHHTTTSTSEEEEEETTSSHHHHHHHHHTTCSEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD   3 iQaeaiplilgggdvlvaaeTGsGKTlaflipvlqivyetkgktgpkalivePtreLaeqtlnnlkkfkkyidlrvlliiggvaardqlskldngvdiv 101
                  Q+ a+ ++ +g++v+vaa+T +GKT +++ ++  ++      +g ++++ +P ++L +q +++l++ + +   +v l++g+ +        + ++ ++
  KOO22421.1  72 FQKIAVGAVERGDSVMVAAHTSAGKTVVAQYAIAMSL-----ARGQRVVYTSPIKALSNQKYRELTSQFGN--EQVGLMTGDCNV-------NVDASCL 156
                 6899999999************************777.....6799*******************777774..255566664443.......2357788 PP

                 EEEHHHHHHHHHCTSSHCTTEEEEEEETHHHHHHTTTHHHHHHHHHHSHHHCTTSTTTSEEEEEESSBS CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD 102 vgtpgrlddllstgklnlsqvrflVlDEadrlldqgfsdfinrilnqlpqitcdgklqrqvivlSATlp 170
                 v+t++ l ++l +g+  +++++++++DE++ + d++++  +++++  l       ++  ++++lSAT+p
  KOO22421.1 157 VMTTEILRNMLYRGSEIIREIKWVIFDEVHYMRDKERGVIWEECIVLL-------PSAVRFVFLSATVP 218
                 ***********999988*******************************.......56678*******98 PP

>> Helicase_C  Helicase conserved C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.6   0.0   5.4e-10   1.4e-06      32     111 .]     371     458 ..     311     458 .. 0.83

  Alignments for each domain:
  == domain 1  score: 28.6 bits;  conditional E-value: 5.4e-10
                 HHHHHHHTTSTEEEESTTSTHHHHHHHHHHHHTTSSSEEEESGGGTSSSTSTTESEEEESSSSSSH........HHHHHHHTTSSSTT CS
  Helicase_C  32 vklllekkgikvavlhgelpqnereeileqfnkgesdvLiatdvaerGidipkvnlVinfdlprnv........tsyiqriGRtgRag 111
                 v +ll   +  vav+h+ +    re +   f+++ +++L at   ++G+++p  ++V+    +++         ++yiq++GR+gR g
  KOO22421.1 371 VGMLLPLLERGVAVHHSGMLPVLREVVEILFQENLVRLLFATETFAMGVNMPARTVVFTSIRKWDGetfrpphaAEYIQMSGRAGRRG 458
                 4555555578899***************************************6666665555566334566677************75 PP

>> ResIII  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.4   0.0   2.2e-09   5.7e-06      22     169 ..      81     217 ..      60     219 .. 0.83

  Alignments for each domain:
  == domain 1  score: 26.4 bits;  conditional E-value: 2.2e-09
                 .TTSEEEEEESTTSTHHHHH.HHHHHHH-S.....-EEEEESSHHHHHHHHHHGGGGTGG....GEEEESSS-B--.......-SEEEEEHHHHHHTH. CS
      ResIII  22 krdkrglikmaTGtGKTlva.aklierllkkgkeekflflvprkslleqtleefkkflseaykeigkkvsgdkkkakekdstnkkilvttiqsldadse 119
                 +r   +++++ T +GKT+va ++++ +l++ g  ++++   p k+l +q ++e+++ + ++   + + ++gd + +      +++ lv+t++ l + + 
  KOO22421.1  81 ERGDSVMVAAHTSAGKTVVAqYAIAMSLAR-G--QRVVYTSPIKALSNQKYRELTSQFGNE---QVGLMTGDCNVN-----VDASCLVMTTEILRNML- 167
                 577789999***********7777777776.4..49**********************999...789999999999.....89***************. PP

                 .......HHHTTT-SEEEEETGGGTTS.T...TTHHHHHT---.SEEEEEESS- CS
      ResIII 120 eeeeeseellrdrfdviiiDEaHrlgakk...swreilekfke.avllglTATp 169
                     ++ +    +++ +i+DE+H +++k+    w+e++  +++    + l+AT 
  KOO22421.1 168 ----YRGSEIIREIKWVIFDEVHYMRDKErgvIWEECIVLLPSaVRFVFLSATV 217
                 ....99999999***************758889***877776614556679997 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.0   2.6e-05     0.066       6     115 ..      84     203 ..      80     242 .. 0.82
   2 ?   -3.5   0.0       4.7   1.2e+04     105     128 ..     301     322 ..     292     323 .. 0.74
   3 ?   -3.8   0.1       5.8   1.5e+04      94     115 ..     536     559 ..     497     571 .. 0.64

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 2.6e-05
      AAA_22   6 gilvvtGesGtGKTtllrrlleqldeeakaeeerpevvfvtlpsstsskdllrellralglelka..............erlsseellealeqalrara 90 
                  +++v +++ +GKT++++       ++      + +vv+   p +  s + +rel +++g+e+ +                 ++e l+++l++ ++  +
  KOO22421.1  84 DSVMVAAHTSAGKTVVAQYAIAMSLAR------GQRVVYTS-PIKALSNQKYRELTSQFGNEQVGlmtgdcnvnvdascLVMTTEILRNMLYRGSEIIR 175
                 5678999999********999998764......55655544.44444777789*******99999************99999***************** PP

      AAA_22  91 vielliiDEaqhlr...seealeeLrsl 115
                  i+ +i DE++++r   +  ++ee+  l
  KOO22421.1 176 EIKWVIFDEVHYMRdkeRGVIWEECIVL 203
                 *************875447777777554 PP

  == domain 2  score: -3.5 bits;  conditional E-value: 4.7
      AAA_22 105 seealeeLrsllnlsrkgvqliLv 128
                 s+e+l+ Lr+l+   r++++ i++
  KOO22421.1 301 SPELLRLLRMLVA--RDLTPAIVF 322
                 5899999999999..998888775 PP

  == domain 3  score: -3.8 bits;  conditional E-value: 5.8
      AAA_22  94 lliiDEaqhlr..seealeeLrsl 115
                   ++ Ea  l+   +++le+L  l
  KOO22421.1 536 HALLAEAAALTqpDDAQLEQLALL 559
                 344456666654325555555433 PP

>> SSI  Subtilisin inhibitor-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   0.2   0.00038      0.97      20      44 ..     741     765 ..     722     786 .. 0.81
   2 ?    0.1   0.1      0.31   7.9e+02      34      65 ..     955     991 ..     952     999 .. 0.77

  Alignments for each domain:
  == domain 1  score: 9.4 bits;  conditional E-value: 0.00038
         SSI  20 veravtLsCePtagGthpaaaaACa 44 
                  e   +L C P+  G+h+++++AC 
  KOO22421.1 741 LEAMRQLLCLPSRLGSHSRSKHACL 765
                 456789******************6 PP

  == domain 2  score: 0.1 bits;  conditional E-value: 0.31
         SSI  34 GthpaaaaACaeLkave....Gdfealaae.kealCt 65 
                 G  +a  +AC+eL a+e    G+f+ l+ + + alC+
  KOO22421.1 955 GRAAAELEACDELLASElilaGTFNDLSPAaAVALCA 991
                 66677789*****998777779999998775666775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1127 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       467  (0.0260472); expected 358.6 (0.02)
Passed bias filter:                      342  (0.0190752); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.74u 0.27s 00:00:01.01 Elapsed: 00:00:00.43
# Mc/sec: 7899.71
//
Query:       KOO22422.1  [L=1384]
Description: putative leucine rich repeat protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.21   12.1  13.5        4.2    7.9   0.9    5.2  6  LRR_4     Leucine Rich repeats (2 copies)
        2.6    8.3  24.4        3.2    8.0   0.1    8.1  9  LRR_6     Leucine Rich repeat
        8.3    6.3  11.9        3.9    7.3   1.8    4.8  5  LRR_8     Leucine rich repeat


Domain annotation for each model (and alignments):
>> LRR_4  Leucine Rich repeats (2 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.7   0.0    0.0017        10       4      39 ..     860     897 ..     857     900 .. 0.81
   2 ?    7.9   0.9   0.00071       4.2       3      33 ..     920     956 ..     920     969 .. 0.83
   3 ?   -2.2   0.0       1.1   6.6e+03       7      30 ..    1097    1127 ..    1095    1139 .. 0.55
   4 ?   -1.5   0.1      0.67     4e+03       3      10 ..    1213    1220 ..    1205    1225 .. 0.59
   5 ?    0.8   0.3      0.12   7.4e+02      25      33 ..    1316    1324 ..    1283    1331 .. 0.54
   6 ?    2.1   0.0     0.048   2.9e+02       3      29 ..    1316    1346 ..    1314    1361 .. 0.67

  Alignments for each domain:
  == domain 1  score: 6.7 bits;  conditional E-value: 0.0017
                 -EEE--SS---E-S-HH......H-TT--EEE-.-S-----G CS
       LRR_4   4 evLdLsnNqltdiplle......klpnLkeLdLsgNnlitdl 39 
                 e+++ s+N +t  + ++       +p Lk++dLs+N    dl
  KOO22422.1 860 ESINVSQNDVTFEDVPGickmltTCPTLKSFDLSDN----DL 897
                 788999999998888666667747************....65 PP

  == domain 2  score: 7.9 bits;  conditional E-value: 0.00071
                 --EEE--SS---E-S-......HHH-TT--EEE-.-S CS
       LRR_4   3 LevLdLsnNqltdipl......leklpnLkeLdLsgN 33 
                 L+ L+L+nN+l  ++       l+++ nLk L Ls+N
  KOO22422.1 920 LTDLNLNNNRLGMVGVrivanaLRSCGNLKRLGLSFN 956
                 899*******887777766566779999******998 PP

  == domain 3  score: -2.2 bits;  conditional E-value: 1.1
                  E--SS---E-S-HH.......H-TT--EEE- CS
       LRR_4    7 dLsnNqltdiplle.......klpnLkeLdL 30  
                  dLs   l+d+++++       ++  L++++L
  KOO22422.1 1097 DLSRSELKDVEPFRllagclrGNRTLTHVTL 1127
                  7775578888885544443333333555554 PP

  == domain 4  score: -1.5 bits;  conditional E-value: 0.67
                  --EEE--S CS
       LRR_4    3 LevLdLsn 10  
                  Le LdLs+
  KOO22422.1 1213 LERLDLSD 1220
                  44444444 PP

  == domain 5  score: 0.8 bits;  conditional E-value: 0.12
                  --EEE-.-S CS
       LRR_4   25 LkeLdLsgN 33  
                  L+ LdLs+N
  KOO22422.1 1316 LQRLDLSFN 1324
                  666666666 PP

  == domain 6  score: 2.1 bits;  conditional E-value: 0.048
                  --EEE--SS.---E-S-.HH.H.-TT--EEE CS
       LRR_4    3 LevLdLsnN.qltdipl.le.k.lpnLkeLd 29  
                  L+ LdLs N  +   +  l+ k + +L+++d
  KOO22422.1 1316 LQRLDLSFNlAIDGYEMgLAlKrNESLTSID 1346
                  8899999764565555564444467777777 PP

>> LRR_6  Leucine Rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.7   0.0      0.12   7.1e+02       2      16 ..     856     870 ..     855     874 .. 0.90
   2 ?    8.0   0.1   0.00054       3.2       2      15 ..     884     897 ..     883     898 .. 0.92
   3 ?    2.7   1.5     0.027   1.6e+02       2      20 ..     917     935 ..     916     936 .. 0.85
   4 ?    0.3   0.1      0.17     1e+03       4      14 ..     947     957 ..     944     957 .. 0.89
   5 ?   -0.8   0.1      0.37   2.2e+03       1      10 [.    1044    1053 ..    1044    1054 .. 0.87
   6 ?   -2.7   0.1       1.5     9e+03       2      10 ..    1119    1127 ..    1118    1128 .. 0.82
   7 ?    2.8   0.1     0.026   1.5e+02       1      16 [.    1209    1224 ..    1209    1224 .. 0.86
   8 ?   -2.9   0.0       1.7     1e+04       5      16 ..    1285    1296 ..    1284    1297 .. 0.84
   9 ?    3.2   0.0     0.019   1.1e+02       3      15 ..    1314    1327 ..    1312    1329 .. 0.80

  Alignments for each domain:
  == domain 1  score: 0.7 bits;  conditional E-value: 0.12
       LRR_6   2 nthLteLdLsgNdIg 16 
                 n ++++ ++s Nd++
  KOO22422.1 856 NETVESINVSQNDVT 870
                 889**********87 PP

  == domain 2  score: 8.0 bits;  conditional E-value: 0.00054
       LRR_6   2 nthLteLdLsgNdI 15 
                 +++L++ dLs+Nd+
  KOO22422.1 884 CPTLKSFDLSDNDL 897
                 99**********96 PP

  == domain 3  score: 2.7 bits;  conditional E-value: 0.027
       LRR_6   2 nthLteLdLsgNdIgDeGa 20 
                 n+ Lt L+L+ N +g +G+
  KOO22422.1 917 NHILTDLNLNNNRLGMVGV 935
                 6669**********98886 PP

  == domain 4  score: 0.3 bits;  conditional E-value: 0.17
       LRR_6   4 hLteLdLsgNd 14 
                 +L+ L Ls+N+
  KOO22422.1 947 NLKRLGLSFNE 957
                 79********5 PP

  == domain 5  score: -0.8 bits;  conditional E-value: 0.37
       LRR_6    1 snthLteLdL 10  
                  +nt+Lt+ ++
  KOO22422.1 1044 TNTTLTTFNI 1053
                  59*****998 PP

  == domain 6  score: -2.7 bits;  conditional E-value: 1.5
       LRR_6    2 nthLteLdL 10  
                  n++Lt++ L
  KOO22422.1 1119 NRTLTHVTL 1127
                  9****9866 PP

  == domain 7  score: 2.8 bits;  conditional E-value: 0.026
       LRR_6    1 snthLteLdLsgNdIg 16  
                  sn+ L+ LdLs+ ++g
  KOO22422.1 1209 SNSLLERLDLSDTGVG 1224
                  5999*******98775 PP

  == domain 8  score: -2.9 bits;  conditional E-value: 1.7
       LRR_6    5 LteLdLsgNdIg 16  
                  +++L Ls N++g
  KOO22422.1 1285 IKSLLLSRNELG 1296
                  68899****998 PP

  == domain 9  score: 3.2 bits;  conditional E-value: 0.019
       LRR_6    3 thLteLdLsgNd.I 15  
                  + L+ LdLs+N  I
  KOO22422.1 1314 CVLQRLDLSFNLaI 1327
                  5699*******766 PP

>> LRR_8  Leucine rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.8   0.0     0.069   4.2e+02      23      37 ..     883     897 ..     878     902 .. 0.69
   2 ?    7.3   1.8   0.00065       3.9      20      59 ..     913     956 ..     908     957 .. 0.83
   3 ?   -3.3   0.2       1.3   7.9e+03      24      33 ..    1210    1219 ..    1206    1221 .. 0.60
   4 ?   -0.8   0.0      0.22   1.3e+03      44      61 .]    1278    1295 ..    1272    1296 .. 0.66
   5 ?   -0.1   0.0      0.14   8.3e+02       3      15 ..    1316    1329 ..    1315    1349 .. 0.52

  Alignments for each domain:
  == domain 1  score: 0.8 bits;  conditional E-value: 0.069
                 T-TT--EEE--SS-- CS
       LRR_8  23 glsnLkvLdLsnNll 37 
                 +++ Lk++dLs+N l
  KOO22422.1 883 TCPTLKSFDLSDNDL 897
                 566777777777744 PP

  == domain 2  score: 7.3 bits;  conditional E-value: 0.00065
                 SSTT-TT--EEE--SS--....-GGGGGGGTT--S-.EEE--SS CS
       LRR_8  20 aFkglsnLkvLdLsnNll....ttlspgafsgLpsLrsLdLsgN 59 
                 a  +++ L+ L+L+nN+l     ++ ++a++++ +L+ L Ls N
  KOO22422.1 913 ALGNNHILTDLNLNNNRLgmvgVRIVANALRSCGNLKRLGLSFN 956
                 5667899*********9944443678999999999999999999 PP

  == domain 3  score: -3.3 bits;  conditional E-value: 1.3
                  -TT--EEE-- CS
       LRR_8   24 lsnLkvLdLs 33  
                  +s L+ LdLs
  KOO22422.1 1210 NSLLERLDLS 1219
                  4556666666 PP

  == domain 4  score: -0.8 bits;  conditional E-value: 0.22
                  GGTT--S-.EEE--SS-- CS
       LRR_8   44 afsgLpsLrsLdLsgNrL 61  
                  a sg  +++sL Ls+N L
  KOO22422.1 1278 AGSGYDKIKSLLLSRNEL 1295
                  555666677777777765 PP

  == domain 5  score: -0.1 bits;  conditional E-value: 0.14
                  -SEEE-TTS-.-SE CS
       LRR_8    3 LtsLdLsnNr.lts 15  
                  L++LdLs+N  + +
  KOO22422.1 1316 LQRLDLSFNLaIDG 1329
                  45555555554444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1384 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       547  (0.0305092); expected 358.6 (0.02)
Passed bias filter:                      363  (0.0202465); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.80u 0.31s 00:00:01.11 Elapsed: 00:00:00.48
# Mc/sec: 8727.78
//
Query:       KOO22423.1  [L=464]
Description: stomatin-like protein 2, partial [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.3e-31  108.0   1.1    5.3e-31  108.0   1.1    1.7  2  Band_7     SPFH domain / Band 7 family
      3e-23   81.7   2.1      3e-23   81.7   2.1    1.9  2  Band_7_C   C-terminal region of band_7
    1.5e-09   36.7   0.2    0.00049   19.5   0.1    2.4  2  EF-hand_1  EF hand
    5.9e-09   35.2   0.2     0.0043   16.9   0.0    2.7  2  EF-hand_6  EF-hand domain
    1.2e-08   34.7   0.8    1.4e-05   24.9   0.1    2.3  2  EF-hand_8  EF-hand domain pair
    1.4e-08   35.1   0.0    2.7e-08   34.1   0.0    1.5  1  EF-hand_7  EF-hand domain pair
      1e-07   31.1   0.4     0.0026   17.2   0.1    2.4  2  EF-hand_5  EF hand
  ------ inclusion threshold ------
      0.019   14.7   0.0      0.035   13.8   0.0    1.4  1  Band_7_1   SPFH domain-Band 7 family


Domain annotation for each model (and alignments):
>> Band_7  SPFH domain / Band 7 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  108.0   1.1   2.4e-34   5.3e-31       2     168 ..      47     219 ..      46     229 .. 0.93
   2 ?   -2.0   0.7       1.4   3.2e+03     161     178 .]     237     260 ..     220     267 .. 0.67

  Alignments for each domain:
  == domain 1  score: 108.0 bits;  conditional E-value: 2.4e-34
      Band_7   2 iieegevgvvvrfGklsrvlepGlhfilPfgrsvt.vvsvrvqtldvsvsltvptkDglpvtidvtviyrvpddapklvaaveresanldnlirrvles 99 
                 +++++ ++vv+rfG+ + vlepGl + +Pf+++v  v+s++   l v+  +t++t+D+++++id+++++rv  da ++++ v    ++    i+++++ 
  KOO22423.1  47 VVPQQMAYVVERFGRFHTVLEPGLRLLVPFVHKVRyVFSLKEEALMVPT-QTAVTRDNVSIGIDGVLYVRV-VDAYAAAYGV----EDAHFAITQLAQT 139
                 7999*******************************9*************.*********************.**********....************* PP

      Band_7 100 alrevisemtleellsnreelaeelknelneqlrkyGvevldvritdidpppevaqalaakqaaeaea...........q 168
                 + r+ i+++tl+  + +r++l++ + + +n+++  +G+++++  i+di ppp+v++a+++ ++ae+++           +
  KOO22423.1 140 TMRSEIGKLTLDATFLERDQLNASIVESINAAAVAWGIQCMRYEIRDIAPPPAVRAAMEMQAEAERRRralildsegeqE 219
                 ********************************************************************555555555555 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 1.4
      Band_7 161 qaaeaea......qaeiaraeaea 178
                  aa +e+      +a++ +a+aea
  KOO22423.1 237 EAAMQERinlalgDARAIEAQAEA 260
                 334444446688888888888876 PP

>> Band_7_C  C-terminal region of band_7
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.1       3.7   8.2e+03      31      43 ..     224     237 ..     222     264 .. 0.57
   2 !   81.7   2.1   1.3e-26     3e-23       2      60 ..     267     325 ..     266     328 .. 0.96

  Alignments for each domain:
  == domain 1  score: -3.0 bits;  conditional E-value: 3.7
    Band_7_C  31 LAkesnt.vilPan 43 
                 LAk ++  vil ++
  KOO22423.1 224 LAKGKKAaVILASE 237
                 66665553444443 PP

  == domain 2  score: 81.7 bits;  conditional E-value: 1.3e-26
    Band_7_C   2 kvaeaikkpggqeAvsLrvAeqYveaFgkLAkesntvilPanvgdvssmvaqalsiykk 60 
                  va+a++ +ggq+A  LrvAeqYv+aF++LA ++ tv++Pan+gdvssmva+a++iy++
  KOO22423.1 267 LVAAAVTAHGGQQASTLRVAEQYVSAFKQLAASGSTVVVPANMGDVSSMVATAMAIYRN 325
                 79*******************************************************97 PP

>> EF-hand_1  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.0   5.6e-06     0.013       5      24 ..     403     422 ..     400     425 .. 0.91
   2 !   19.5   0.1   2.2e-07   0.00049       3      24 ..     436     457 ..     434     462 .. 0.87

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 5.6e-06
                 HHHHHTTTSSSEEEHHHHHH CS
   EF-hand_1   5 iFrefDkDgdGkIdfeEfke 24 
                 +F +fD Dg G+I+++Ef++
  KOO22423.1 403 AFLLFDADGGGTISLSEFLA 422
                 899***************86 PP

  == domain 2  score: 19.5 bits;  conditional E-value: 2.2e-07
                 HHHHHHHTTTSSSEEEHHHHHH CS
   EF-hand_1   3 keiFrefDkDgdGkIdfeEfke 24 
                 + +F+e+D+D++G Id+ Ef +
  KOO22423.1 436 EMLFDEMDVDQSGVIDRAEFAA 457
                 678*****************86 PP

>> EF-hand_6  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   0.0   1.9e-06    0.0043       4      27 ..     402     425 ..     399     428 .. 0.87
   2 !   15.7   0.0   4.6e-06      0.01       4      23 ..     437     456 ..     434     458 .. 0.90

  Alignments for each domain:
  == domain 1  score: 16.9 bits;  conditional E-value: 1.9e-06
   EF-hand_6   4 eaFklfDkdgdGkidaeElrkalr 27 
                 +aF lfD dg G+i+ +E+ + + 
  KOO22423.1 402 HAFLLFDADGGGTISLSEFLATIG 425
                 89*****************98776 PP

  == domain 2  score: 15.7 bits;  conditional E-value: 4.6e-06
   EF-hand_6   4 eaFklfDkdgdGkidaeElr 23 
                  +F+++D+d +G id++E+ 
  KOO22423.1 437 MLFDEMDVDQSGVIDRAEFA 456
                 69****************96 PP

>> EF-hand_8  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.5   0.1    0.0008       1.8      32      50 ..     404     422 ..     401     424 .. 0.89
   2 !   24.9   0.1   6.1e-09   1.4e-05      18      52 ..     425     459 ..     421     461 .. 0.87

  Alignments for each domain:
  == domain 1  score: 8.5 bits;  conditional E-value: 0.0008
   EF-hand_8  32 frefDtdgdGkisfeEFcv 50 
                 f +fD dg G+is+ EF++
  KOO22423.1 404 FLLFDADGGGTISLSEFLA 422
                 558**************85 PP

  == domain 2  score: 24.9 bits;  conditional E-value: 6.1e-09
   EF-hand_8  18 glkkglseeevdilfrefDtdgdGkisfeEFcvll 52 
                 gl + l+e+++++lf+e+D d++G+i+  EF +++
  KOO22423.1 425 GLGGLLTESQAEMLFDEMDVDQSGVIDRAEFAARW 459
                 555559**************************998 PP

>> EF-hand_7  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.1   0.0   1.2e-11   2.7e-08       4      68 ..     400     457 ..     397     459 .. 0.92

  Alignments for each domain:
  == domain 1  score: 34.1 bits;  conditional E-value: 1.2e-11
   EF-hand_7   4 lkeaFkelDtdgdgyldkeellrllrkifqgagegsklsdeelellfkefDtdkdGvisfdEFlk 68 
                 l  aF ++D dg g ++ +e+l +        g g  l++ + e lf+e+D d++Gvi++ EF +
  KOO22423.1 400 LGHAFLLFDADGGGTISLSEFL-ATI------GLGGLLTESQAEMLFDEMDVDQSGVIDRAEFAA 457
                 56799***************99.777......*******************************86 PP

>> EF-hand_5  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.7   0.0   6.2e-05      0.14       3      22 ..     402     421 ..     400     424 .. 0.88
   2 !   17.2   0.1   1.1e-06    0.0026       4      22 ..     438     456 ..     435     457 .. 0.92

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 6.2e-05
                 HHHHHH-SS-SSCE-HHHHH CS
   EF-hand_5   3 dtFqaiDlNgDGkIskeELk 22 
                 ++F  +D++g G+Is +E+ 
  KOO22423.1 402 HAFLLFDADGGGTISLSEFL 421
                 67999*************95 PP

  == domain 2  score: 17.2 bits;  conditional E-value: 1.1e-06
                 HHHHH-SS-SSCE-HHHHH CS
   EF-hand_5   4 tFqaiDlNgDGkIskeELk 22 
                 +F+++D++++G I++ E+ 
  KOO22423.1 438 LFDEMDVDQSGVIDRAEFA 456
                 6****************96 PP

>> Band_7_1  SPFH domain-Band 7 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.0   1.6e-05     0.035     142     209 ..     133     203 ..     126     205 .. 0.89

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 1.6e-05
    Band_7_1 142 vtrlsdvlaeskipvldlaak...seelaeklkealkeelaeyGlelekleienislpeevekaldkrasm 209
                 +t+l+++ + s+i+ l l+a+    ++l + + e ++++  + G+++ + ei++i+ p+ v+ a++ +a++
  KOO22423.1 133 ITQLAQTTMRSEIGKLTLDATfleRDQLNASIVESINAAAVAWGIQCMRYEIRDIAPPPAVRAAMEMQAEA 203
                 578999999999999999996332689**************************************999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (464 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       585  (0.0326287); expected 358.6 (0.02)
Passed bias filter:                      318  (0.0177366); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.51u 0.28s 00:00:00.79 Elapsed: 00:00:00.44
# Mc/sec: 3164.06
//
Query:       KOO22424.1  [L=2212]
Description: protein phosphatase 2c and cyclic nucleotide-binding kinase domain-containing [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.2e-30  105.1   2.4    1.4e-14   54.3   0.9    3.7  3  Beta_helix       Right handed beta helix region
    1.4e-29  102.0   0.1    2.2e-14   53.3   0.1    3.7  3  cNMP_binding     Cyclic nucleotide-binding domain
    3.7e-23   82.2   0.0    6.1e-23   81.5   0.0    1.3  1  Pkinase          Protein kinase domain
    1.2e-19   70.6   0.0    1.5e-07   30.9   0.0    3.4  3  NosD             Periplasmic copper-binding protein (NosD)
    7.2e-08   32.6   1.8    7.2e-08   32.6   1.8    1.8  2  Ax_dynein_light  Axonemal dynein light chain
    0.00045   19.6   0.0    0.00084   18.7   0.0    1.3  1  Pkinase_Tyr      Protein tyrosine kinase
  ------ inclusion threshold ------
      0.019   15.2   3.7         11    6.3   0.2    4.3  3  TetR_C_11        Tetracyclin repressor-like, C-terminal domai
        2.3    8.9   6.7         29    5.4   0.1    3.8  4  MgtE_N           MgtE intracellular N domain


Domain annotation for each model (and alignments):
>> Beta_helix  Right handed beta helix region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.1   0.0   2.4e-12   5.4e-09       4     158 .]     103     261 ..     100     261 .. 0.90
   2 !   54.3   0.9   6.1e-18   1.4e-14       2     154 ..     270     422 ..     262     441 .. 0.88
   3 !   24.6   0.8   8.4e-09   1.9e-05      62     158 .]     378     497 ..     377     518 .. 0.67

  Alignments for each domain:
  == domain 1  score: 36.1 bits;  conditional E-value: 2.4e-12
                 EE-SS-E.EEESEEEES-.......SS-SEEE-SSS-.EEES-EEES-SS-SEEE-TT-S-EEES-EEE---SEEE-TT--S--EEES-EEES-SS-SE CS
  Beta_helix   4 singssnvtiknntisns.......ggyGiylrgssnvvienneiannsgsGiyilgssnntisnntisdnngggialfgasnnlienneitdnggsGi 95 
                 ++ +ss++  ++++++ +        + Gi + +    ++ +n+i +  gs +    + ++t+s+n i d+ g+g+ l++    ++  n i + +g+G+
  KOO22424.1 103 NMPSSSTAVMRDCDVTAApqarcrlRNGGISIAEEAAPLLVGNTIIG--GSIVLCGTAVGCTLSENIICDSRGSGVLLSYRAAGTLTANVILRSAGVGL 199
                 556667778888888888888888888999999999999999***99..777777778***************************************** PP

                 E-TT-S--EEES-EEESTT--SEE---TT---EEES-EEES-SSEEEE-TT-SS--EEES-E. CS
  Beta_helix  96 ylnyssnntienNiidnnagsGividdsssnvtvtnNtitnnkgaGiavvgsssnvtvrnNti 158
                 ++++ss  t+++N++ + +g G+ ++ ++   ++ +N++ ++ + ++++ g++++  + +N +
  KOO22424.1 200 EVTSSSTPTVHRNQVLDSGGVGLLVRGGA-CGEFVDNVVRGAWSSAAELSGRGTEPRLQGNRF 261
                 *****************************.7777*********99999999999988888876 PP

  == domain 2  score: 54.3 bits;  conditional E-value: 6.1e-18
                 SEEE-SS-E.EEESEEEES-SS-SEEE-SSS-.EEES-EEES-SS-SEEE-TT-S-EEES-EEE---SEEE-TT.--S--EEES-EEES-.SS-SEE-T CS
  Beta_helix   2 gisingssnvtiknntisnsggyGiylrgssnvvienneiannsgsGiyilgssnntisnntisdnngggialf.gasnnlienneitdn.ggsGiyln 98 
                 g++i+++   ++++ ++s+   +Gi ++++ n +++++ i  +++ G+ +  +   t+++n+i+ n  +gi ++ g+s+ lie n+++   +g+Gi + 
  KOO22424.1 270 GVLIRDGAAPQLSGGEVSGHALAGIEVGDGANPTVSGCSIRRCGQAGVLLMPGVSGTLRGNKIEANLRSGIECSsGTSGLLIEANTVSGHkAGVGILVR 368
                 788888888899999999999999999999999999999999999999999999999999999999999999999999999999999999767788888 PP

                 T-S--EEES-EEESTT--SEE---TT---EEES-EEES-SSEEEE-TT-SS--EEE CS
  Beta_helix  99 yssnntienNiidnnagsGividdsssnvtvtnNtitnnkgaGiavvgsssnvtvr 154
                         +N +++na  Gi++d  ++   ++ N++++n +aG+ v++++s v+++
  KOO22424.1 369 AGGCGHWVENLVSGNA-VGIEVDGAGAHPLMQRNKVHGNHKAGVRVMSGAS-VEFA 422
                 7777888999999999.9999999997777999999999999999999998.7775 PP

  == domain 3  score: 24.6 bits;  conditional E-value: 8.4e-09
                 -EEE---SEEE-TT.--S--EEES-EEES-SS-SEE-TT-S--EEES-EEESTT.........................--SEE---TT---EEES-EE CS
  Beta_helix  62 ntisdnngggialf.gasnnlienneitdnggsGiylnyssnntienNiidnna.........................gsGividdsssnvtvtnNti 134
                 n +s+n  +gi ++ ++ + l+++n+++ n ++G+++++  ++ + +  i++n+                         g+G+v++ ++ + +  +N i
  KOO22424.1 378 NLVSGNA-VGIEVDgAGAHPLMQRNKVHGNHKAGVRVMSGASVEFADGSIRSNGhscvvhksgvggrrgaprpligddrGAGVVVHVGG-EARLDGNAI 474
                 5666666.777777667777777777777777777777766666666666666566666666666666777777777777777777777.666677777 PP

                 ES-SSEEEE-TT-SS--EEES-E. CS
  Beta_helix 135 tnnkgaGiavvgsssnvtvrnNti 158
                 + n+gaG++   +++ +++r+N +
  KOO22424.1 475 SANAGAGVFADAHAR-LELRGNAF 497
                 777777776666666.77777765 PP

>> cNMP_binding  Cyclic nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.8   0.0   9.1e-15     2e-11       5      85 ..    1619    1698 ..    1615    1700 .. 0.85
   2 !   53.3   0.1   9.7e-18   2.2e-14       2      86 ..    1735    1833 ..    1734    1834 .. 0.95
   3 ?   -0.9   0.0       0.8   1.8e+03      51      80 ..    1883    1913 ..    1874    1916 .. 0.77

  Alignments for each domain:
  == domain 1  score: 43.8 bits;  conditional E-value: 9.1e-15
                    -TT-EEE-TTSB-SEEEEEEES-EEEEEEETTS.EEEEEEE-TT..EEESHHHHHHTS--SSEEEESSTEEEEEEEHHHHHHH CS
  cNMP_binding    5 kagevifrqGdpadslyivlsGevrvyrlsedgkevvlavlgpG..dlfGelalltgeprtatvvAltdsellalprddflel 85  
                     +g+ i++qGd++d++y+ +sG + v  + +d k   +   g+G   +fGelall+ +pr+at++A ++  l+ l+r+ f+++
    KOO22424.1 1619 MPGQDIIKQGDKGDYFYVAESGAFDV--IVNDEKV-HTYQAGDGiyPCFGELALLYAKPRAATIRASGPGMLWGLDRKGFRSV 1698
                    589***********************..5555533.444566665557*******99***********************976 PP

  == domain 2  score: 53.3 bits;  conditional E-value: 9.7e-18
                    EEE-TT-EEE-TTSB-SEEEEEEES-EEEE...............EEETTS.EEEEEEE-TTEEESHHHHHHTS--SSEEEESSTEEEEEEEHHH CS
  cNMP_binding    2 rsfkagevifrqGdpadslyivlsGevrvy...............rlsedgkevvlavlgpGdlfGelalltgeprtatvvAltdsellalprdd 81  
                    +sf  ge++f++Gd +ds+y++l G++ v+               + +e+g+e  +  l +  +fGe+all+++pr+a+v++lt+ ++++++r++
    KOO22424.1 1735 QSFGGGEFVFHEGDDGDSMYVILCGTAVVTkakaavhsrtqlvdgQDHEEGEE-EMMQLEAEMYFGERALLDNAPRAASVQSLTPLKCMKIERAT 1828
                    67889************************99********99999999999999.7777************************************* PP

                    HHHHH CS
  cNMP_binding   82 flell 86  
                    f++ll
    KOO22424.1 1829 FERLL 1833
                    **997 PP

  == domain 3  score: -0.9 bits;  conditional E-value: 0.8
                    ESHHHHH.HTS--SSEEEESSTEEEEEEEHH CS
  cNMP_binding   51 fGelall.tgeprtatvvAltdsellalprd 80  
                     G la+l  g++  +tv+A + s++++l++ 
    KOO22424.1 1883 GGLLAALhIGSNEIYTVRAESKSKIAELEQT 1913
                    466677764577899**********999875 PP

>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   81.5   0.0   2.7e-26   6.1e-23      15     259 ..    1885    2138 ..    1881    2151 .. 0.84

  Alignments for each domain:
  == domain 1  score: 81.5 bits;  conditional E-value: 2.7e-26
                  EEEEEETTTTEEEEEEEEECHCHCHHHH.HHHHHHHHHHHHHS....CTTB--EEEEEEESSEEEEEEE--TTEBHHHHHH.HHSS--HHHHHHHHH CS
     Pkinase   15 VykaveketgkivAvKkikkekakkkke.kkvlrEikilkklk....hpnivrlyevfeekdelylvleyveggeladlle.rkgslseeeakkiak 105 
                   + a++  +++i+ v   +k+k+ + ++ ++v rE+++++        p +  ++ +f ++  l+ ++      el +++e   g+++ e a+ + +
  KOO22424.1 1885 LLAALHIGSNEIYTVRAESKSKIAELEQtDRVSRELEVMRAAGlhghTPMLPAMLCTFASPLALFALFKTRVACELSHIIEvMGGKVPTESARYVGA 1981
                  567889999**************9999999**********99884533566677788888888887777777778******87788*********** PP

                  HHHHHHHHHH.HTTEE-SS-SGGGEEEETTTEEEE-SGTTSEESSSSCSBCTTTSCGGGS-HHHHTTSCBSHHHHHHHHHHHHHHHHHSS-STTTSS CS
     Pkinase  106 qilegleylH.skgiiHrDlKpeNiLidekgelKitDFGlakelessskltsfvgtseYlAPEvlkeneyskkvDvWslGvilyelltgkppfsgek 201 
                   ++++le lH ++g+++r l p+ + ide+g++ ++D+  ak l+ ++ + + +g  +YlAPE ++ ++++ +vD WslGv+l+++++g+ p+ ++ 
  KOO22424.1 1982 CVIAALERLHcKMGVVYRNLSPDALAIDENGVVCLMDLRQAKILSGNK-TFTLCGVADYLAPEQVTCSGHGLSVDFWSLGVLLWTITAGEGPWGNDP 2077
                  **********8899********************************88.999******************************************988 PP

                  HHHHHHHHHHTHHHHHHHCT...SHH...HHHTTS-HHHHHHHHHHT-SSGCCSTTHHHHH CS
     Pkinase  202 gkekvekeldqlekilkilg...etkeklpeaseiseeakdllkkllkkdpkkRltaeell 259 
                  ++ +v+k ++++++ +   +   e +  +  ++ + +++ dl+++l+  dp  Rl+a+ + 
  KOO22424.1 2078 NEMNVYKRITDHVSGALSARlqaERERGFLPPDGFVPSFVDLVDRLIVPDPLARLGASAVT 2138
                  88777777777332222222334666667777777*********************76554 PP

>> NosD  Periplasmic copper-binding protein (NosD)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.6   0.0   7.1e-10   1.6e-06      60     167 ..     129     235 ..      84     243 .. 0.82
   2 !   30.9   0.0   6.8e-11   1.5e-07      15     158 ..     267     416 ..     252     421 .. 0.82
   3 !   13.3   0.0   1.7e-05     0.038      52     154 ..     399     506 ..     392     518 .. 0.87

  Alignments for each domain:
  == domain 1  score: 27.6 bits;  conditional E-value: 7.1e-10
        NosD  60 ryGihlensesntiedntlssnesGialmsss.nntlenNtisnnenyGillsdssnntisnNtis.nnnkGiflensssntitgNriesnqkiGilll 156
                 + Gi + +     + +nt+ +    i+l  +  ++tl+ N+i ++++ G+lls+ +  t++ N+i+ + + G+ +++ss+ t+ +N++ +++++G+l +
  KOO22424.1 129 NGGISIAEEAAPLLVGNTIIG--GSIVLCGTAvGCTLSENIICDSRGSGVLLSYRAAGTLTANVILrSAGVGLEVTSSSTPTVHRNQVLDSGGVGLL-V 224
                 558888888888888888888..446666666366*************************************************************9.8 PP

        NosD 157 sssegntiynN 167
                  ++   ++++N
  KOO22424.1 225 RGGACGEFVDN 235
                 87777777777 PP

  == domain 2  score: 30.9 bits;  conditional E-value: 6.8e-11
        NosD  15 rgngiqlensegseisnneisn.srdgilldnssnntitgntienl.ryGihlensesntiedntlssne.sGialmsssnn.tlenNtisnnen.yGi 108
                 r  g+ +      ++s+ e+s    +gi + +  n t++g+ i+ + ++G+ l+   s t+++n+++ n  sGi  +s +    +e Nt+s+ +   Gi
  KOO22424.1 267 RAVGVLIRDGAAPQLSGGEVSGhALAGIEVGDGANPTVSGCSIRRCgQAGVLLMPGVSGTLRGNKIEANLrSGIECSSGTSGlLIEANTVSGHKAgVGI 365
                 55666666666777766665541446779999999999***99999999*******999*******999989*9999888777999****999988999 PP

        NosD 109 llsdssnntisnNtisnnnkGiflens.ssntitgNriesnqkiGilllss 158
                 l+++       +N +s n+ Gi ++++  +  +++N++ +n+k G+ ++s+
  KOO22424.1 366 LVRAGGCGHWVENLVSGNAVGIEVDGAgAHPLMQRNKVHGNHKAGVRVMSG 416
                 9999999999999999**********977777889******9999997765 PP

  == domain 3  score: 13.3 bits;  conditional E-value: 1.7e-05
        NosD  52 tgntienl.ryGihlensesntiedntlssnesGialmsss...nntlenNtisnnenyGillsdssnntisnNtis.nnnkGiflensssntitgNri 145
                 ++n+++ + ++G+++++  s+   d  ++sn+   ++++s    ++      i +++++G+ +    +  + +N is n ++G+f ++  + +++gN +
  KOO22424.1 399 QRNKVHGNhKAGVRVMSGASVEFADGSIRSNGHSCVVHKSGvggRRGAPRPLIGDDRGAGVVVHVGGEARLDGNAISaNAGAGVFADAHARLELRGNAF 497
                 56777777799***************************99987444888999*********************************************** PP

        NosD 146 esnqkiGil 154
                  sn +  + 
  KOO22424.1 498 GSNLGDAVR 506
                 999655554 PP

>> Ax_dynein_light  Axonemal dynein light chain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.6   1.8   3.2e-11   7.2e-08      22     113 ..     655     741 ..     643     782 .. 0.76
   2 ?   -3.9   0.1         5   1.1e+04     110     134 ..    1771    1795 ..    1765    1798 .. 0.84

  Alignments for each domain:
  == domain 1  score: 32.6 bits;  conditional E-value: 3.2e-11
  Ax_dynein_light  22 qqvssepatredviklqekldeklqqrqaretGiCpiReelysqcfdEliRQvtincaerGllLlrvrdelrmtiaayktlyessvaFgmrk 113
                      q++  +p++r++ i+l e+l++klq+ +     +   ++   +  f E++RQv ++caerG lL rvr  ++  ++ +++++e+s +  +rk
       KOO22424.1 655 QRAFARPSNRSEAIQLAENLERKLQNSES---DLHATQR-SWQITFCEIVRQVFVHCAERGELLDRVRRWYELELNRLNEMLERSRE-RIRK 741
                      778899*******************6665...4544444.4677899************************************8762.3444 PP

  == domain 2  score: -3.9 bits;  conditional E-value: 5
  Ax_dynein_light  110 gmrkalqaeqgkselekkikeLeee 134 
                         r +l   q+++e e+++++Le+e
       KOO22424.1 1771 HSRTQLVDGQDHEEGEEEMMQLEAE 1795
                       5788899999999999999999988 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.7   0.0   3.7e-07   0.00084      43     220 ..    1911    2088 ..    1891    2101 .. 0.75

  Alignments for each domain:
  == domain 1  score: 18.7 bits;  conditional E-value: 3.7e-07
                   HHHHHHHHHHHHHHTS.-BTTB--EEEE.EESSSSEEE..EEE--TTEBHHHHHHHTCTTTSBHHHHHHHHHHHHHHHHHHH.HTTEEEST-SGGG CS
  Pkinase_Tyr   43 eekeelleeakimkkl.khpnivkllgv.ctkeeplli..vteyvkgGdLlkfLrkkekekltlkdllsfalqvAkGmeyLe.skklvHrdlaarN 133 
                   e+++++ +e+++m++   h +   l ++ ct ++pl +  +++     +L++ ++     k+ +++   + + v +++e L+ ++ +v r+l+   
   KOO22424.1 1911 EQTDRVSRELEVMRAAgLHGHTPMLPAMlCTFASPLALfaLFKTRVACELSHIIEVM-GGKVPTESARYVGACVIAALERLHcKMGVVYRNLSPDA 2005
                   556667778888877776776666655414455554440033334445777777777.778888888888888888899998345699******** PP

                   EEEEETTEEEE-STTTHEETTTSSEEEETTSSTSGGGGS-HHHHHHSEEEHHHHHHHHHHHHHHHHTTSSGTTTTS.HHHHHHHHHHT CS
  Pkinase_Tyr  134 vLlsenkvvkisDfGLardiekddeyvkkeeaklpvkWmapEslkekkftsksDvWsfGvllwEiftlgespypgl.kneevleklke 220 
                     ++en vv + D   a+ +    + +k+ +      ++apE ++ +    + D Ws Gvllw i   ge p+ +  ++++v++++++
   KOO22424.1 2006 LAIDENGVVCLMDLRQAKIL----SGNKTFTLCGVADYLAPEQVTCSGHGLSVDFWSLGVLLWTITA-GEGPWGNDpNEMNVYKRITD 2088
                   *************9888888....3334444556789**************************9988.****9887577788888865 PP

>> TetR_C_11  Tetracyclin repressor-like, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.3   0.2     0.005        11      27      70 ..     696     738 ..     682     739 .. 0.86
   2 ?    3.5   0.1     0.039        88       9      45 ..     899     935 ..     896     958 .. 0.87
   3 ?    2.7   0.0     0.068   1.5e+02      47      87 ..    2082    2121 ..    2073    2139 .. 0.81

  Alignments for each domain:
  == domain 1  score: 6.3 bits;  conditional E-value: 0.005
   TetR_C_11  27 agallrallaeaqrdpelaealrerlleprraalravlrrAvar 70 
                   +++r+++ ++++  el +++r+ ++e + ++l ++l+r ++r
  KOO22424.1 696 FCEIVRQVFVHCAERGELLDRVRR-WYELELNRLNEMLERSRER 738
                 55799*******************.***************9998 PP

  == domain 2  score: 3.5 bits;  conditional E-value: 0.039
   TetR_C_11   9 gDLrallralaealaspragallrallaeaqrdpela 45 
                  D++a+l+++ eal+ ++ ++ll++ l e ++d+++a
  KOO22424.1 899 SDIIAVLKEVIEALNADDRAKLLQSALKETSSDERVA 935
                 699***************************9999875 PP

  == domain 3  score: 2.7 bits;  conditional E-value: 0.068
   TetR_C_11   47 alrerlleprraalravlrrAvarGelradadvelvldlll 87  
                   + + +++    al a+l+  ++rG l++d  v+  +dl+ 
  KOO22424.1 2082 VYKR-ITDHVSGALSARLQAERERGFLPPDGFVPSFVDLVD 2121
                  4445.88999999*****************99999998875 PP

>> MgtE_N  MgtE intracellular N domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.9   0.5     0.037        83      54      76 ..     905     931 ..     902     944 .. 0.65
   2 ?    5.4   0.1     0.013        29       4      54 ..     947     996 ..     944    1003 .. 0.74
   3 ?   -4.2   0.0         8   1.8e+04      59      87 ..    1039    1067 ..    1035    1078 .. 0.42
   4 ?   -1.9   0.1       2.3   5.2e+03      61      87 ..    1708    1734 ..    1700    1736 .. 0.69

  Alignments for each domain:
  == domain 1  score: 3.9 bits;  conditional E-value: 0.037
                 HHHHHCCS-HHHHHHH....HCCCHHH CS
      MgtE_N  54 laelleeldsDdaadl....leelpee 76 
                 l+e++e l++Dd+a l    l+e   +
  KOO22424.1 905 LKEVIEALNADDRAKLlqsaLKETSSD 931
                 678899999999999943334444444 PP

  == domain 2  score: 5.4 bits;  conditional E-value: 0.013
                 HHHHHCHCCS-HHHHHHHHHHS-HHHHHHHHCTS-.CCCCCHHHHCS-HHHH CS
      MgtE_N   4 adiaelleelpeeeraallrllpkeeaaevleeld.edlqeeliealsdeel 54 
                  ++a+ l+  + ++ + ll+ +p+e++a++l+el+   + ++l + l+++ l
  KOO22424.1 947 NELARSLS--TRAQNVSLLSAMPQEMLANILKELPlVADGSQLASILPPALL 996
                 55666665..668889999999999999999999955577777777777655 PP

  == domain 3  score: -4.2 bits;  conditional E-value: 8
                  CCS-HHHHHHHHCCCHHHHHHHHHHCS-H CS
      MgtE_N   59 eeldsDdaadlleelpeekveellsalde 87  
                  e l +D  a    +l  +++ ++lsa++e
  KOO22424.1 1039 ESLGPDVFAFAYANLGMNERLRMLSAINE 1067
                  33333333333333333333333333332 PP

  == domain 4  score: -1.9 bits;  conditional E-value: 2.3
                  S-HHHHHHHHCCCHHHHHHHHHHCS-H CS
      MgtE_N   61 ldsDdaadlleelpeekveellsalde 87  
                  +   +  d+l+ lp +  + l++++ e
  KOO22424.1 1708 MKLLRKMDILSSLPFNSLQTLMNHMVE 1734
                  555556788888888888888877755 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (2212 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       508  (0.028334); expected 358.6 (0.02)
Passed bias filter:                      400  (0.0223102); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 1.10u 0.30s 00:00:01.40 Elapsed: 00:00:00.48
# Mc/sec: 13746.59
//
Query:       KOO22425.1  [L=1357]
Description: hypothetical protein Ctob_000519 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.1e-05   23.7   0.1    1.8e-05   23.1   0.1    1.2  1  Patched         Patched family
  ------ inclusion threshold ------
        2.2    8.1  11.7      0.056   13.3   3.7    2.4  2  Sterol-sensing  Sterol-sensing domain of SREBP cleavage-activ


Domain annotation for each model (and alignments):
>> Patched  Patched family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.1   0.1     2e-09   1.8e-05     299     458 ..     758     951 ..     752     988 .. 0.76

  Alignments for each domain:
  == domain 1  score: 23.1 bits;  conditional E-value: 2e-09
     Patched 299 Ddmflmvaawkrteakls.....vkkrigealseagvaitiTslTdvlsFgiGaittlpaiqlFciytavailfdfiYqitffaavlai.aakaeaegr 391
                 D m l++ aw+  + +       ++ r++ ++ eag a t   +  + +F +  ++   +i+ F ++ av++l++ +  ++f+   l+i   ++e++ +
  KOO22425.1 758 DAMTLLIDAWQLSSSQSAailssLPARLNWVFNEAGFACTHSIIVAMCAFVACSYSSWLQISHFGVFCAVQLLVQLFMALIFLPVGLVIfHDQLEMKPN 856
                 78889999999888888788889************************************************************8655551567899998 PP

     Patched 392 hsllli....iekeesps..........klqeiesessek.....................dddkskeaeelks......kffreiyapfllnksvrlv 449
                    + +    + + e  +          +          +                     ++++ k+++   s      + +  i++p+l ++  r++
  KOO22425.1 857 LAFFCCqgkpA-EGEKAVtayaafaslwT----------PqpltstehlsdtraleasigkEPEPPKNVHG--SwlwpfpRLLTRIFVPVLYKPAARCF 942
                 87777777642.22222323333334440..........33444444444444544444446666666665..13356679999*************99 PP

     Patched 450 vlllfvvyl 458
                  l++fv  +
  KOO22425.1 943 FLVFFVSLF 951
                 999998654 PP

>> Sterol-sensing  Sterol-sensing domain of SREBP cleavage-activation
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   3.7   6.3e-06     0.056      50     150 ..     756     862 ..     750     864 .. 0.84
   2 ?   -3.1   1.0      0.67     6e+03      88     117 ..    1210    1240 ..    1194    1248 .. 0.66

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 6.3e-06
                     CHHCCHHCHHHHHHHHTTTCH.....HHHHHHHHHHHCCCCHHCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHH CS
  Sterol-sensing  50 gvdnifvlvkavqrtsrslde.....seriaealgevgpsilltsltellalllgaltdvpavqeFclfaavavlvdFllqitfFvavLsldirr 139
                     + d + +l+ a+q +s+++       + r+  +++e+g +++ + +  ++a++  + ++  ++++F +f+av +lv+ ++ ++f    L +   +
      KOO22425.1 756 SFDAMTLLIDAWQLSSSQSAAilsslPARLNWVFNEAGFACTHSIIVAMCAFVACSYSSWLQISHFGVFCAVQLLVQLFMALIFLPVGLVIFHDQ 850
                     678899999999988888877788889**************************999*********************998877766556666555 PP

                     H.HCTXXTTTXX CS
  Sterol-sensing 140 e.eserldvlcc 150
                        + +l ++cc
      KOO22425.1 851 LeMKPNLAFFCC 862
                     545666666666 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 0.67
                      CCCHHHHHHH.HHHHCCHHHHHHHHHHHHHH CS
  Sterol-sensing   88 tsltellall.lgaltdvpavqeFclfaava 117 
                      t++  +lall + +  ++ +++ F +faa  
      KOO22425.1 1210 TAAMSSLALLvVTSNLQLTVITGFVVFAATL 1240
                      4444455555477777778888888887754 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1357 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       803  (0.0447878); expected 358.6 (0.02)
Passed bias filter:                      459  (0.025601); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.86u 0.30s 00:00:01.15 Elapsed: 00:00:00.47
# Mc/sec: 8635.33
//
Query:       KOO22426.1  [L=49]
Description: hypothetical protein Ctob_000517, partial [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (49 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       254  (0.014167); expected 358.6 (0.02)
Passed bias filter:                      173  (0.00964917); expected 358.6 (0.02)
Passed Vit filter:                         4  (0.000223102); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.23s 00:00:00.54 Elapsed: 00:00:00.37
# Mc/sec: 394.55
//
Query:       KOO22427.1  [L=168]
Description: hypothetical protein Ctob_000512 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (168 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       691  (0.0385409); expected 358.6 (0.02)
Passed bias filter:                      449  (0.0250432); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.41u 0.26s 00:00:00.67 Elapsed: 00:00:00.41
# Mc/sec: 1227.89
//
Query:       KOO22428.1  [L=318]
Description: RNA-binding protein 27 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.2e-11   42.9   0.2    9.5e-10   38.2   0.0    2.3  2  RRM_1          RNA recognition motif. (a.k.a. RRM, RBD, or RN
      4e-06   27.0   0.0    7.9e-06   26.1   0.0    1.4  1  PWI            PWI domain
     0.0076   16.1   0.1      0.027   14.3   0.0    2.0  2  RRM_occluded   Occluded RNA-recognition motif
  ------ inclusion threshold ------
      0.013   15.5   0.0      0.022   14.7   0.0    1.4  1  Nup35_RRM_2    Nup53/35/40-type RNA recognition motif
       0.13   10.9   3.1       0.22   10.2   3.1    1.3  1  Adeno_PV       Adenovirus minor core protein PV


Domain annotation for each model (and alignments):
>> RRM_1  RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.2   0.0   2.7e-13   9.5e-10       1      59 [.     126     179 ..     126     190 .. 0.87
   2 ?    2.6   0.1     0.034   1.2e+02      38      69 ..     245     276 ..     239     277 .. 0.85

  Alignments for each domain:
  == domain 1  score: 38.2 bits;  conditional E-value: 2.7e-13
                 EEEESETT.TSSHHHHHHHHHTTSCEEEEEEEEETTTSEEEEEEEEESSHHHHHHHHHHH CS
       RRM_1   1 lfVgnLpp.dvteeeLkelFskfGpiksiklvrdetgkskgfafVeFeskedAekAleal 59 
                 +fVgnLp+ + t ++L+ +F+kfG i++ +l ++     +++afV+F+++ +A +Al+  
  KOO22428.1 126 IFVGNLPEeNNTIDQLSSHFGKFGAIVNMQLKPQ-----HRHAFVQFKTRAEAVAALD-S 179
                 8*****6516788********************7.....******************9.4 PP

  == domain 2  score: 2.6 bits;  conditional E-value: 0.034
                 EEEEEEEEESSHHHHHHHHHHHTTEEETTEEE CS
       RRM_1  38 skgfafVeFeskedAekAlealngkklggrel 69 
                 + ++a   +e+   A+kA +a++ + ++++el
  KOO22428.1 245 TAPVAGAAYEKAAGAAKAAAAVQQQLVQQKEL 276
                 556666789****************9999987 PP

>> PWI  PWI domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.1   0.0   2.2e-09   7.9e-06       2      66 ..       9      75 ..       8      77 .. 0.85

  Alignments for each domain:
  == domain 1  score: 26.1 bits;  conditional E-value: 2.2e-09
         PWI  2 vlkpWIakkitellgfeDdvvieyvlnlLeeekeldpkklqi....nltgfLekeaekFvkeLWellls 66
                +lk W  +  + +++ e  v+++y+++lL+++     ++lq     +l++fL++e+   v++L++++ s
  KOO22428.1  9 ALKGWLIDACEPYCDCEPAVLADYIIALLKKD--KPDDELQRycneSLEDFLRDETIGLVQRLFDTVTS 75
                6999*************************774..444555555555******************99876 PP

>> RRM_occluded  Occluded RNA-recognition motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.3   0.0   7.4e-06     0.027       3      52 ..     125     174 ..     123     196 .. 0.75
   2 ?   -2.0   0.3      0.92   3.3e+03      45      67 ..     253     275 ..     249     281 .. 0.75

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 7.4e-06
  RRM_occluded   3 tisllplsDtvnk.ariralveekegeikkivLvpdheGAivefkdekiag 52 
                   ti + +l++  n+ +++++++ +  g+i++++L p+h+ A+v+fk ++ a 
    KOO22428.1 125 TIFVGNLPEENNTiDQLSSHFGKF-GAIVNMQLKPQHRHAFVQFKTRAEAV 174
                   566667776655437899999999.*******************9988764 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 0.92
  RRM_occluded  45 fkdekiagkasLaLdgsefegkk 67 
                   +++++ a+ka+ a + +  + k+
    KOO22428.1 253 YEKAAGAAKAAAAVQQQLVQQKE 275
                   67788899998888777776665 PP

>> Nup35_RRM_2  Nup53/35/40-type RNA recognition motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.7   0.0   6.1e-06     0.022      19      53 .]     143     177 ..     130     177 .. 0.89

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 6.1e-06
  Nup35_RRM_2  19 ehFasfGeIvkhyvpkevsvmyvkfesekdaekAL 53 
                   hF  fG Iv++   ++   ++v+f+++ +a  AL
   KOO22428.1 143 SHFGKFGAIVNMQLKPQHRHAFVQFKTRAEAVAAL 177
                  5****************************998887 PP

>> Adeno_PV  Adenovirus minor core protein PV
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   3.1   6.2e-05      0.22     222     281 ..     227     287 ..     222     307 .. 0.84

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 6.2e-05
    Adeno_PV 222 pttsstsiatategmetqtspvasavadaavqaaaaaasktstevqtdpwmfrvsa.prrp 281
                 p +++t +a+a      +t+pva a  + a  aa aaa+     vq    + +vsa p+  
  KOO22428.1 227 PKAAATKLAAAPTAGVKRTAPVAGAAYEKAAGAAKAAAAVQQQLVQQKELLAKVSAlPKAD 287
                 778899999997777789*********************9***************944443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (318 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1034  (0.0576719); expected 358.6 (0.02)
Passed bias filter:                      577  (0.0321825); expected 358.6 (0.02)
Passed Vit filter:                        59  (0.00329076); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.48u 0.29s 00:00:00.77 Elapsed: 00:00:00.43
# Mc/sec: 2219.30
//
Query:       KOO22429.1  [L=464]
Description: amidase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.1e-77  262.0   1.7    1.2e-77  261.8   1.7    1.0  1  Amidase   Amidase


Domain annotation for each model (and alignments):
>> Amidase  Amidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  261.8   1.7   6.8e-82   1.2e-77       2     451 .]      22     446 ..      21     446 .. 0.87

  Alignments for each domain:
  == domain 1  score: 261.8 bits;  conditional E-value: 6.8e-82
                 HHHHHHHHHHHHH.HHH--EEEEEHCCCCHHHHT---TTT......TTTT-EEEEETTB--TTSB--TTSGGGTT-B-SS.--HHHHHHHHTT-EEEEE CS
     Amidase   2 lveaflkrieavn.eklnalvtvfieealaqAakldkkrargkekgpLhGvPisvKDnidvkgvpttaGskalenypaek.DatvverLkkaGavilgk 98 
                 lve+ l+ri+  + e   a++ v++++ala+A+++d+ ra g  ++p  G+PisvKD +dv g  t aGs al+  p+ k Dat v+rL++aGavi+g+
  KOO22429.1  22 LVETALARIADPKlEGSRAFMKVYSDAALAEADASDRLRALGVVRSPVEGIPISVKDLYDVCGDVTRAGSVALASDPPAKaDATAVARLRAAGAVIVGR 120
                 677778877763324456899****************************************************99877666****************** PP

                 E--SGGG-SSSSTT-TT---BBTTCTCC...B--SSSHHHHHHHHTTSSSCEEEEESSSTTHHHHHHCTSEEEE--TTSC--TTB--SSTTT-EEEEEE CS
     Amidase  99 TnmdefamgsstensvfgptrNPwdksr...tpGGSSGGsAAavAaglvplaiGtDtGGSiRiPAsfcglvGlKPtygrvSragvvalessldvvGpla 194
                 T++ efa+g  + n+ +g+ +NP+d+     +pGGSS G A+ vA g+v +++G+Dt GS+RiPA +cg++G+KPt  r++r+g+ +l+++ld+vGpla
  KOO22429.1 121 TVTVEFAFGGVGLNPHYGTPKNPYDRASgghIPGGSSAGAAVSVADGMVAMGLGSDTRGSVRIPAGLCGIAGFKPTQRRIPRDGCFPLSYTLDSVGPLA 219
                 **************************97777******************************************************************** PP

                 SSHHHHHHHHHHHBS--TT-TTS----HHHHHHHHCTT---TT-EEEEEGGGC.SS---CCHHHHHHHHHHHHHCTT-EEEEEE-CCGGGHHHHHHHHH CS
     Amidase 195 rsvedlalllrvilgedpkdstssvipeesedlaeelkkslkglriGvvkedg.vasldpevqravekalkaLeeaGhevvevelpsleealslyylil 292
                 rs+  +a ++++il  d + s+ + +p          + +++ lr  v++     a+l+p+v  a+e+al+ L++aG+++ve    ++e +++   ++l
  KOO22429.1 220 RSIGCCA-VYDAILAADGAASSAAAPP----------ALKPSSLRLLVPRASLlFADLQPAVSDAFERALDVLRAAGATLVEPPAAEVETVIA-RAHAL 306
                 ***8776.6778887888877777644..........4445677777887777679**************************77777777777.34444 PP

                 HHHHHHHTTT-SSSSS---SS-SCCCCCCCHHHHCCS-HHHHHHHHHHHHHCSCCCCCCCHHHHHHHHHHHHHHHHHHCCCBSEEEEESSSSS--BCCC CS
     Amidase 293 vaeassnlarylgvryerlsetkvlsellpksraellgeevkrrielgnyalsaeasskyylkaqkvrrllrrefakafeelDvllsPtaptpaprlge 391
                 ++ ++             + e+ ++++  ++  ++l+ + v +ri  g+   +a+     y +   +r l+++ + ++++ +D++++Pt++++ap++ e
  KOO22429.1 307 YSGGG-FA----------APEAWQIHRARFAAQKHLYDPRVAVRIAPGEACSAAD-----YVQLGFDRNLVIKGIEALMQGCDAMVLPTCAITAPTIAE 389
                 44444.32..........34566679999999**************999666666.....7777777889***************************** PP

                 CCHHHCSHHHHHGCCTTT...HHHHHTT--EEEEECCCCT.TECEEEEEEESTT-HHHHH CS
     Amidase 392 kdktidsytvlynlldftavvvpvnlaglpalsvpagksedglPvGvqvigkafqeetlL 451
                 +d+   + +   + l +++++ + n+ +  a +vp++    ++PvG +v+g a++++ +L
  KOO22429.1 390 ADSS--DAAYGALNLLLLRNTGLINIIDGCAATVPCNRLG-EAPVGFMVAGLAMSDKHIL 446
                 *974..444444555566779****************986.8**************9886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (464 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       308  (0.0171789); expected 358.6 (0.02)
Passed bias filter:                      224  (0.0124937); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.26s 00:00:00.74 Elapsed: 00:00:00.42
# Mc/sec: 3298.55
//
Query:       KOO22430.1  [L=1614]
Description: sodium channel protein type 9 subunit alpha [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
   4.5e-195  645.0  42.4    1.8e-56  191.1   0.2    4.1  4  Ion_trans    Ion transport protein
    2.4e-07   30.4   0.0    5.5e-07   29.2   0.0    1.6  1  GPHH         Voltage-dependent L-type calcium channel, IQ-ass
     0.0035   16.1   2.0     0.0035   16.1   2.0    9.8 11  PKD_channel  Polycystin cation channel
  ------ inclusion threshold ------
        2.6    8.0   7.6       0.11   12.4   0.5    2.4  2  UPF0542      Uncharacterised protein family UPF0542


Domain annotation for each model (and alignments):
>> Ion_trans  Ion transport protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  191.1   0.2   4.1e-60   1.8e-56       2     243 ..      54     373 ..      53     375 .. 0.94
   2 !  135.8   6.9   3.2e-43   1.4e-39       8     239 ..     461     700 ..     456     706 .. 0.90
   3 !  188.2   3.0   3.1e-59   1.4e-55       2     242 ..     880    1218 ..     879    1220 .. 0.93
   4 !  145.6  11.8   3.1e-46   1.4e-42       2     241 ..    1271    1521 ..    1270    1525 .. 0.90

  Alignments for each domain:
  == domain 1  score: 191.1 bits;  conditional E-value: 4.1e-60
                 HHHHHHHHHHHHHHHHHHHCCCSSSSHHHHC.HHHHHHHHHHHHHHHHHHHHHHHHHTH.HHHHHHCHSHHHHHHHHHHHHHHHHH.HHHHHHHHHHHH CS
   Ion_trans   2 svfelfilllillncvflaletyfpedelek.tileilelvftaiftlemllkilalgl.likkrYlrdpwnilDflvvlpsllsl.vlseesllllsv 97 
                 ++f+ +il++il+nc+++a +++ +++ ++k  ++ ++e+++++ift+e++ ki+a+g+ + +++Ylrd w+ lDf+vv++++l + ++  e++++ s+
  KOO22430.1  54 KWFDPLILCTILCNCATMAWQSPLDPCCTNKaAFIGVMEWIYLYIFTFELVSKIFAYGFlFQEGTYLRDAWCQLDFIVVSLAWLPIlFP--ETFGNTSA 150
                 79***********************9888889****************************************************87444..47****** PP

                 HHHHGGGGGGHHHCHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCC..................................... CS
   Ion_trans  98 lrlfrvlrllklisrleglrtlvtalirsvkdllnvlllllvvlfifaligvqlfkgklrek..................................... 159
                 +r +r lr+l++++r++g+  ++ a++ ++++l nv+ l+ +++++f+++g++lfkg l+++                                     
  KOO22430.1 151 IRSVRALRPLRALKRVPGMPQMISAIMAAFPKLSNVVALCSFIFLVFGIVGMELFKGALHYRrslkgngggaggsseaddgddseaavgtpeyqelydt 249
                 *************************************************************************************************** PP

                 ..............................CC..........SCCSTSSSTTTSSSSSSHHHHHHHHHHHHTTSSHHHHHHHHHHHSHHHHHHHHHHHH CS
   Ion_trans 160 ..............................ne..........caktwenpnngntnFdnfftallwlfrlmttegwgdilyatldekskvaliyfvifi 218
                                               n+          c++ +en n g   Fd++++++l +++  t++ w+d +ya + + + + +iyf+++ 
  KOO22430.1 250 gqacnptknaeaqrrrmkgggasggdgsetNDdptlcpadttCSYFDENLNTGLLGFDDIGKCFLIILQGTTFDTWTDPMYALMASFNPFVFIYFLLIA 348
                 999999999999888888887777766655116667777788********************************************************* PP

                 HHHHHHHHHHHHHHHHHHHHHHHHH CS
   Ion_trans 219 ilgsflllNlliaviadnfqelter 243
                 +l++++++ l++avi+d f + +e+
  KOO22430.1 349 MLCGIFVVQLFLAVIVDEFVKAQEQ 373
                 *******************999987 PP

  == domain 2  score: 135.8 bits;  conditional E-value: 3.2e-43
                 HHHHHHHHHHHHHCCCSSSSHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHCHSHHHHHHHHHHHHHHHHHHHHH.....HHHHHHHHHHHH CS
   Ion_trans   8 illlillncvflaletyfpedelektileilelvftaiftlemllkilalgllikkrYlrdpwnilDflvvlpsllslvlse.....esllllsvlrlf 101
                 ++ l+++n+ +++  +y +++e+    le   +++ + f++em+ k+l+ g+    +Y+ d wn lD ++v++s++++v +       +++ l++lr++
  KOO22430.1 461 STGLVVYNLYLMCAPYYGMSEEYA-MDLENKATMVSWAFIIEMFGKLLGIGC---ANYWADGWNQLDGTIVSLSIFEMVITLiagpgANFSFLRILRML 555
                 66799*********99*9999988.8899999********************...***********************66666777789********** PP

                 GGGGGGHHHCHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCC....CC......SCCSTSSSTTTSSSSSSHHHHHHHHHHHH CS
   Ion_trans 102 rvlrllklisrleglrtlvtalirsvkdllnvlllllvvlfifaligvqlfkgklrek....ne......caktwenpnngntnFdnfftallwlfrlm 190
                 r+lr+l+l+++++gl  ++ +l++++++l+n+ +l+ +vl+if+l+g+ lf+g +  +    n+      c +  e  + +++++d f+ a+l+ f +m
  KOO22430.1 556 RILRILRLMKSWKGLYKIIVTLGKTLPQLGNIGVLMGLVLLIFGLLGMTLFAGIYAPStgysNQvcpggsCPDDLE--ERPRYHWDYFVPAMLTCFIMM 652
                 ***************999*********************************9999977666511555555644444..458999*************88 PP

                 TTSSHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
   Ion_trans 191 ttegwgdilyatldekskvaliyfvifiilgsflllNlliaviadnfqe 239
                 t+ gw di+++ +   +  a+iy vi++i+g f+++Nl++av  ++f++
  KOO22430.1 653 TG-GWVDIVQPAYAIVGGPAIIYCVIVVIVGCFVIVNLFVAVLLNAFAS 700
                 86.5*******************************************97 PP

  == domain 3  score: 188.2 bits;  conditional E-value: 3.1e-59
                  HHHHHHHHHHHHHHHHHHHCCCSSSSHHHHC.HHHHHHHHHHHHHHHHHHHHHHHHHTH.HHHHHHCHSHHHHHHHHHHHHHHHHH....HHHHHHH CS
   Ion_trans    2 svfelfilllillncvflaletyfpedelek.tileilelvftaiftlemllkilalgl.likkrYlrdpwnilDflvvlpsllsl....vlseesl 92  
                  ++f+ +i+l i+ ++++lal+ +    +++  t l +l++++ta+f+ em  k++++g+ +++++Y+++ wn+lD+++v++s+l+l    +     +
  KOO22430.1  880 PIFDQVIVLAIIASSICLALDVPRLDPDSTLaTTLHYLDYFWTALFFCEMMSKVVSFGFaCGEGTYVTSAWNLLDLVIVTVSFLVLlsefF---PMF 973 
                  68******************888887666669****************************************************9966652...459 PP

                  HHHHHHHHHGGGGGGHHHCHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCC.............................. CS
   Ion_trans   93 lllsvlrlfrvlrllklisrleglrtlvtalirsvkdllnvlllllvvlfifaligvqlfkgklrek.............................. 159 
                    l++lr++rvlr+l+l+ r++g++ ++ +l++s+++++nv+ ++l + ++fa++g+q+f+g l  +                              
  KOO22430.1  974 AKLKMLRILRVLRPLRLLARSPGMKLVIVSLFQSMPAVGNVVGVVLAFQLVFAILGMQIFMGALGTCsdpsimtaeecheppadnlleleapggldl 1070
                  9************************************************************************************************ PP

                  ....................................................CC.....SCCSTSSSTTTSSSSSSHHHHHHHHHHHHTTSSHHHHH CS
   Ion_trans  160 ....................................................ne.....caktwenpnngntnFdnfftallwlfrlmttegwgdil 199 
                                                                      +       +  w+np     +Fd+f++a++ lf++mt++gw  i+
  KOO22430.1 1071 esierrlgesssmpnmagmvataaasaggllmngwphddtrwtshrrrlkggGAaggghVYVHWANP--VIGSFDSFGSAMMLLFVMMTGDGWDVIM 1165
                  ********************9999999999999999988888887776666500556668899***9..8889************************ PP

                  HHHHHHS..........HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
   Ion_trans  200 yatldek..........skvaliyfvifiilgsflllNlliaviadnfqelte 242 
                     +d+           s  a i+ v+++++g+f+ +Nl+++v++++f  ++ 
  KOO22430.1 1166 FGLMDATepgrapirndSGAAAIFAVLWMFIGNFFAINLFVGVVVEQFTAIKN 1218
                  ************************************************98876 PP

  == domain 4  score: 145.6 bits;  conditional E-value: 3.1e-46
                  HHHHHHHHHHHHHHHHHHHCCCSSSSHHHHC.HHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHCHSHHHHHHHHHHHHHHHHHHHHH.......H CS
   Ion_trans    2 svfelfilllillncvflaletyfpedelek.tileilelvftaiftlemllkilalgllikkrYlrdpwnilDflvvlpsllslvlse.......e 90  
                  + f+ fi+ +i+ n++++a++++  e ++ + t  + + ++f +i+ +e+ lki++lg+    +Y++d w+++Df+ v++sll+ ++se        
  KOO22430.1 1271 KAFDTFIIGVIVANVFVMACDYWGIENDEVNfTRYNKAMMCFSYIYYIEFTLKIIGLGP---YTYFGDNWCRFDFTLVCTSLLDQFASElleqflpI 1364
                  68************************8888899999***********************...*********************99555566667776 PP

                  HHHHHHHHHHHGGGGGGHHHCHSHH..HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCCCCSCCSTSSSTTTSSSSSSHHHHHHH CS
   Ion_trans   91 sllllsvlrlfrvlrllklisrleg..lrtlvtalirsvkdllnvlllllvvlfifaligvqlfkgklreknecaktwenpnngntnFdnfftallw 185 
                     +l+vlr++r+lr+l+l++  +   +r l+++l+ s++ l+nv  +l +v+f+++++gv+lf              +++  ++ nF+++++++l 
  KOO22430.1 1365 PPMVLRVLRVLRILRILRLLKGPGArrIRDLIMTLVISFPPLMNVGGVLTLVVFMYGVLGVNLF---------TFVVAQENMTDKRNFKTLGSSMLL 1452
                  688889999999999999986544411666**********************************.........44455666688999********** PP

                  HHHHHTTSSHHHHHHHHHHHS.............HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
   Ion_trans  186 lfrlmttegwgdilyatldek.............skvaliyfvifiilgsflllNlliaviadnfqelt 241 
                  l++++t+++w  ++ + l  +             + +a+ yfv+f++lgs+++lNl++avi +nf+ l 
  KOO22430.1 1453 LVQCLTGDNWSGMMVDALVTEdsgkcsaaegncgGPIAIPYFVSFMVLGSMVVLNLVVAVILENFSTLG 1521
                  *****************************************************************9875 PP

>> GPHH  Voltage-dependent L-type calcium channel, IQ-associated
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.2   0.0   1.2e-10   5.5e-07       2      42 ..    1536    1576 ..    1535    1591 .. 0.87

  Alignments for each domain:
  == domain 1  score: 29.2 bits;  conditional E-value: 1.2e-10
        GPHH    2 FvrvWaeyDPeAtgrikvqdmyellrrlspPLGfGkkcPsr 42  
                  F++vW+e+DP A  ri  +++ +l+  l+ PLG++  +++r
  KOO22430.1 1536 FKEVWGEFDPDADNRIPSTKLPDLILALPTPLGIKGIVSHR 1576
                  9*********************************8766666 PP

>> PKD_channel  Polycystin cation channel
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.4   1.1     0.045     2e+02     209     258 ..      86     137 ..      80     144 .. 0.67
   2 ?   -0.9   0.1      0.11   5.1e+02     309     358 ..     156     205 ..     144     210 .. 0.81
   3 ?   -1.0   2.3      0.12   5.3e+02     396     424 ..     340     368 ..     302     370 .. 0.66
   4 !    4.7   0.0    0.0023        10     221     264 ..     494     538 ..     477     541 .. 0.89
   5 !    8.1   0.6   0.00021      0.92     303     359 ..     548     607 ..     543     613 .. 0.87
   6 !    7.9   1.8   0.00024       1.1     368     424 ..     641     699 ..     635     700 .. 0.75
   7 !    7.4   2.1   0.00033       1.5     219     274 ..     923     979 ..     903     984 .. 0.65
   8 ?    0.1   0.4     0.055   2.5e+02     305     358 ..     980    1033 ..     968    1037 .. 0.76
   9 ?   -1.9   1.7      0.23     1e+03     398     425 ..    1188    1215 ..    1186    1216 .. 0.87
  10 ?    0.9   1.2     0.031   1.4e+02     180     258 ..    1272    1350 ..    1262    1355 .. 0.79
  11 !   16.1   2.0   7.8e-07    0.0035     306     425 ..    1371    1519 ..    1357    1520 .. 0.81

  Alignments for each domain:
  == domain 1  score: 0.4 bits;  conditional E-value: 0.045
                  HHHHHHHHHHHHHHHHHHHHHH----...----------HHHHHHHHHHHHHH CS
  PKD_channel 209 lflllievvfvvfvlyfvveeilkir...kerasylrsvwnlldlaivvlsvv 258
                  +f+ ++e +++ ++ +  v  i+++    +e   ylr++w +ld+++v l  +
   KOO22430.1  86 AFIGVMEWIYLYIFTFELVSKIFAYGflfQE-GTYLRDAWCQLDFIVVSLAWL 137
                  5566667776666655555555555422134.79************9988766 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 0.11
                  HHGGGGG------------------------HHHHHHHHHHHHHHHHHHS CS
  PKD_channel 309 tlkllkvlrfnktlslltktlaralkdvlgfalvivilflayaqlgvllf 358
                   l+ l+ l+ ++ + ++ +++++a +++  +  + + +fl+++++g+ lf
   KOO22430.1 156 ALRPLRALKRVPGMPQMISAIMAAFPKLSNVVALCSFIFLVFGIVGMELF 205
                  46667777778889999999999999999999999999999998887555 PP

  == domain 3  score: -1.0 bits;  conditional E-value: 0.12
                  HHHHHHHHHHHHHHHHHHHHHHHHHT-XX CS
  PKD_channel 396 Gpllllalvflvifillnlflaiindsye 424
                    +++l++++l  + +++lfla+i d+++
   KOO22430.1 340 VFIYFLLIAMLCGIFVVQLFLAVIVDEFV 368
                  45677777788888889*********997 PP

  == domain 4  score: 4.7 bits;  conditional E-value: 0.0023
                  HHHHHHHHHH-------.-------HHHHHHHHHHHHHHHHHHHH CS
  PKD_channel 221 fvlyfvveeilkirker.asylrsvwnlldlaivvlsvvlivlai 264
                  +  +f++e++ k+   + a+y  + wn+ld  iv ls++ +v+ +
   KOO22430.1 494 VSWAFIIEMFGKLLGIGcANYWADGWNQLDGTIVSLSIFEMVITL 538
                  556899999999999999***********************9976 PP

  == domain 5  score: 8.1 bits;  conditional E-value: 0.00021
                  HHHHHHHHGGGGG------------...------------HHHHHHHHHHHHHHHHHHSS CS
  PKD_channel 303 vlvflttlkllkvlrfnktlslltk...tlaralkdvlgfalvivilflayaqlgvllfG 359
                  +l +l +l++l++lr++k ++ l k   tl + l+++  + +++ +++l ++ lg++lf 
   KOO22430.1 548 FLRILRMLRILRILRLMKSWKGLYKiivTLGKTLPQLGNIGVLMGLVLLIFGLLGMTLFA 607
                  67789999999999999999888774447889************************9995 PP

  == domain 6  score: 7.9 bits;  conditional E-value: 0.00024
                  HHHHHHHHHHHHTT---HHHHHH.H-TTHH...HHHHHHHHHHHHHHHHHHHHHHHHT-XX CS
  PKD_channel 368 lvksiltlfrlilgdfqyteles.gnrvLG...pllllalvflvifillnlflaiindsye 424
                  +v ++lt+f+++ g  ++ ++ + +  + G   ++++++ v++ +f+++nlf+a++ ++++
   KOO22430.1 641 FVPAMLTCFIMMTG--GWVDIVQpAYAIVGgpaIIYCVIVVIVGCFVIVNLFVAVLLNAFA 699
                  77788888776665..5666644144555555589*********************99986 PP

  == domain 7  score: 7.4 bits;  conditional E-value: 0.00033
                  HHHHHHHHHHHH----.---.-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
  PKD_channel 219 vvfvlyfvveeilkir.ker.asylrsvwnlldlaivvlsvvlivlailrevlakkll 274
                   +f++  ++  ++ +    +   y++s+wnlldl+iv +s ++++  ++ ++   k+l
   KOO22430.1 923 ALFFCE-MMSKVVSFGfACGeGTYVTSAWNLLDLVIVTVSFLVLLSEFFPMFAKLKML 979
                  333333.3333333331334569******************99988877777666665 PP

  == domain 8  score: 0.1 bits;  conditional E-value: 0.055
                   HHHHHHGGGGG------------------------HHHHHHHHHHHHHHHHHHS CS
  PKD_channel  305 vflttlkllkvlrfnktlslltktlaralkdvlgfalvivilflayaqlgvllf 358 
                    +l +l+ l++l  ++ ++l+   l++++++v  +  v++ + l++a+lg+ +f
   KOO22430.1  980 RILRVLRPLRLLARSPGMKLVIVSLFQSMPAVGNVVGVVLAFQLVFAILGMQIF 1033
                   2344445555555567799999***********9999999999****9998776 PP

  == domain 9  score: -1.9 bits;  conditional E-value: 0.23
                   HHHHHHHHHHHHHHHHHHHHHHHT-XXX CS
  PKD_channel  398 llllalvflvifillnlflaiindsyee 425 
                   ++ ++ +f+  f ++nlf+ ++ +++++
   KOO22430.1 1188 IFAVLWMFIGNFFAINLFVGVVVEQFTA 1215
                   56778899999**************986 PP

  == domain 10  score: 0.9 bits;  conditional E-value: 0.031
                   EEE--TTSS-EEEEEEEEE------SHHHHHHHHHHHHHHHHHHHHHHHHH-------.-------HHHHHHHHHHHHHH CS
  PKD_channel  180 lvEvpalGgvlpsvsvqsvkLlryvtklslflllievvfvvfvlyfvveeilkirker.asylrsvwnlldlaivvlsvv 258 
                    + ++ +G+++++v v++ +     ++  +f     +++++  +y++ e+ lki   +   y+ + w   d+ +v+ s++
   KOO22430.1 1272 AFDTFIIGVIVANVFVMACDYWGIENDEVNFTRYNKAMMCFSYIYYI-EFTLKIIGLGpYTYFGDNWCRFDFTLVCTSLL 1350
                   56778889999999999999999888877777776777777777775.6777777777699***************9876 PP

  == domain 11  score: 16.1 bits;  conditional E-value: 7.8e-07
                   HHHHHGGGGG---.....---------------------HHHHHHHHHHHHHHHHHHSS........SS-STTSSHHHHHHHHHHHHTT---HH.. CS
  PKD_channel  306 flttlkllkvlrf.....nktlslltktlaralkdvlgfalvivilflayaqlgvllfG........tqasnfsnlvksiltlfrlilgdfqyt.. 386 
                   +l +l++l++lr+     +++++ l  tl  + + ++ +  v+ +++++y++lgv lf         t + nf++l  s+l l++++ gd +++  
   KOO22430.1 1371 VLRVLRILRILRLlkgpgARRIRDLIMTLVISFPPLMNVGGVLTLVVFMYGVLGVNLFTfvvaqenmTDKRNFKTLGSSMLLLVQCLTGD-NWSgm 1465
                   4555555555555222446899*****************************999887754444443367789*********997766665.78889 PP

                   ...............HHHHH-TTHHHHHHHHHHHHHHHHHHHHHHHHHHT-XXX CS
  PKD_channel  387 ...............elesgnrvLGpllllalvflvifillnlflaiindsyee 425 
                                  +  +++  + + +++++++l  +++lnl++a+i +++++
   KOO22430.1 1466 mvdalvtedsgkcsaAEGNCGGPIAIPYFVSFMVLGSMVVLNLVVAVILENFST 1519
                   999********9987455788889999************************987 PP

>> UPF0542  Uncharacterised protein family UPF0542
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.5   2.5e-05      0.11       4      68 ..     325     387 ..     322     389 .. 0.89
   2 ?   -2.8   1.6       1.5   6.5e+03      19      42 ..     948     971 ..     944     979 .. 0.83

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 2.5e-05
     UPF0542   4 wlskvalqlvlyvakdPweFlttvlli.ltPllllsaflsyKLakelkkqekekklkakrkaniak 68 
                 w + +   ++l ++ +P+ F++ +l++ l  ++++  fl+      +k+qe++   ka + a +ak
  KOO22430.1 325 WTDPM---YALMASFNPFVFIYFLLIAmLCGIFVVQLFLAVIVDEFVKAQEQDAIDKALKAAKLAK 387
                 66777...8889999********99963799***********************999999998887 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 1.5
     UPF0542  19 dPweFlttvlliltPllllsafls 42 
                 + w+ l  v+++++ l+lls f  
  KOO22430.1 948 SAWNLLDLVIVTVSFLVLLSEFFP 971
                 67999**************98865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1614 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       776  (0.0432818); expected 358.6 (0.02)
Passed bias filter:                      374  (0.0208601); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.91u 0.32s 00:00:01.23 Elapsed: 00:00:00.48
# Mc/sec: 10074.83
//
Query:       KOO22431.1  [L=604]
Description: n-terminal kinase-like protein, partial [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    7.5e-08   32.0   0.0    1.3e-07   31.3   0.0    1.4  1  Pkinase        Protein kinase domain
      1e-07   31.5   0.0    2.4e-07   30.3   0.0    1.6  1  Pkinase_Tyr    Protein tyrosine kinase
      5e-06   26.0   0.0    1.1e-05   24.9   0.0    1.5  1  Kinase-like    Kinase-like
    4.1e-05   23.5   1.9        1.5    9.3   0.0    4.6  4  HEAT           HEAT repeat
     0.0043   17.5   0.9         11    6.6   0.0    4.5  4  HEAT_EZ        HEAT-like repeat
  ------ inclusion threshold ------
      0.011   15.8   0.6       0.14   12.2   0.2    2.7  2  Cnd1           non-SMC mitotic condensation complex subunit 1
      0.078   13.6   0.2        3.9    8.1   0.0    3.0  3  Vac14_Fab1_bd  Vacuolar 14 Fab1-binding region


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.3   0.0   5.1e-11   1.3e-07      33     198 ..      65     246 ..      40     286 .. 0.81

  Alignments for each domain:
  == domain 1  score: 31.3 bits;  conditional E-value: 5.1e-11
                 ECHCHCHHHH.HHHHHHHHHHHHHSCTTB--EEEEEEE.....SSEEEEEEE--TTEBHHHHHHHHSS--HHHHHHHHHHHHHHHHHHH.HTTEE-SS- CS
     Pkinase  33 kkekakkkke.kkvlrEikilkklkhpnivrlyevfee.....kdelylvleyveggeladllerkgslseeeakkiakqilegleylH.skgiiHrDl 124
                 + +++k+++e   v +  + l+++khp+++r++++ e+        +++v+e v+   l+d++  +   ++  +   ++++++++++l  + +i+H  +
  KOO22431.1  65 DLKNKKSDEElALVKNAQRRLRTIKHPYLLRCIDAGEQldnkgGGIIWIVTEPVQ--PLEDVID-NLREAPGSIAWGTYTLAAAIKFLNiDCNIVHGQV 160
                 4455555555456666777899999*************8877777799******9..899**97.4556667888999**********98999****** PP

                 SGGGEEEETTTEEEE-SGTTSEESSSSCS....BCTTTSCGGGS-HHHH....TT....SCBSHHHHHHHHHHHHHHHHHSS-STT CS
     Pkinase 125 KpeNiLidekgelKitDFGlakelesssk....ltsfvgtseYlAPEvl....ke....neyskkvDvWslGvilyelltgkppfs 198
                   + +++d+  + K++ F l   + + ++      + v  ++Y +PE+     ++    +++  ++D+W+lG++++e+ +g+   +
  KOO22431.1 161 CMSSLFVDKGMDWKLGGFELLVTAPEANPayfaRAKDVLPKRYQSPEISrgqpEQlealQRIPVAADWWALGCTVFEVWCGTIKSP 246
                 ********7777*******998888888889998899999********97655114445778999***************997766 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.3   0.0   9.5e-11   2.4e-07      16     208 ..      45     248 ..      37     269 .. 0.76

  Alignments for each domain:
  == domain 1  score: 30.3 bits;  conditional E-value: 9.5e-11
                  EEEEEETTTTSSEEEEEEEEE..STTSSHHHHHHHHHHHHHHHTS-BTTB--EEEEEE..SSSS.....EEEEEE--TTEBHHHHHHHTCTTTSBHHH CS
  Pkinase_Tyr  16 vegtlkgekekkevkVavKtl..keeateeekeelleeakimkklkhpnivkllgvct..keep.....llivteyvkgGdLlkfLrkkekekltlkd 104
                  ++g+ + +ke  ++ V + +   k+++++ee + + +  + ++++khp +++++ +    +  +     ++ivte v+   L++ + +    +    +
   KOO22431.1  45 YSGKRE-NKEGVKEIVSIFMYdlKNKKSDEELALVKNAQRRLRTIKHPYLLRCIDAGEqlD--NkgggiIWIVTEPVQ--PLEDVIDNL---REAPGS 134
                  455555.55555666666665325555555555555566789999*********9999542..33456799****886..455555554...222455 PP

                  HHHHHHHHHHHHHHHH.HTTEEEST-SGGGEEEEETTEEEE-STTTHEET.TTSSEEEETTSSTSGGGGS-HHHHHHSE........EEHHHHHHHHH CS
  Pkinase_Tyr 105 llsfalqvAkGmeyLe.skklvHrdlaarNvLlsenkvvkisDfGLardi.ekddeyvkkeeaklpvkWmapEslkekk........ftsksDvWsfG 192
                  +   ++ +A+++++L+ + ++vH  ++    ++++++  k++ f L  +  e +  y ++ +  lp ++ +pE+ + +         + +++D W+ G
   KOO22431.1 135 IAWGTYTLAAAIKFLNiDCNIVHGQVCMSSLFVDKGMDWKLGGFELLVTApEANPAYFARAKDVLPKRYQSPEISRGQPeqlealqrIPVAADWWALG 232
                  6667899********95679*************************999887889999****************9887767788888899********* PP

                  HHHHHHHTTSSGTTTT CS
  Pkinase_Tyr 193 vllwEiftlgespypg 208
                   +++E+ +   ++ ++
   KOO22431.1 233 CTVFEVWCGTIKSPSD 248
                  ******9855444444 PP

>> Kinase-like  Kinase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.9   0.0   4.4e-09   1.1e-05     164     248 ..     154     243 ..     141     267 .. 0.81

  Alignments for each domain:
  == domain 1  score: 24.9 bits;  conditional E-value: 4.4e-09
  Kinase-like 164 glvhgkftvdnllldekgglmlggftaLvragtkvvl..seve......kgfaPpEllgsrggytrknktkmthkldaWqlGlviyriwclkl 248
                   +vhg++   +l+ d+    +lggf+ Lv+a +  ++  +         k ++ pE+   +   + ++  ++  + d W+lG +++ +wc ++
   KOO22431.1 154 NIVHGQVCMSSLFVDKGMDWKLGGFELLVTAPEANPAyfA--RakdvlpKRYQSPEISRGQPE-QLEALQRIPVAADWWALGCTVFEVWCGTI 243
                  69*****************************999885433..144777799*****9766555.56678889999***************754 PP

>> HEAT  HEAT repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   0.1      0.88   2.2e+03      15      24 ..       6      15 ..       5      20 .. 0.82
   2 ?    2.1   0.0      0.12     3e+02      10      30 ..     416     436 ..     407     437 .. 0.81
   3 !    9.3   0.0   0.00058       1.5       2      30 ..     446     474 ..     445     475 .. 0.88
   4 !    7.4   0.1    0.0023         6       1      24 [.     494     517 ..     494     523 .. 0.90

  Alignments for each domain:
  == domain 1  score: -0.6 bits;  conditional E-value: 0.88
                HHHHHHHHHH CS
        HEAT 15 eVReaAakaL 24
                +VReaA   L
  KOO22431.1  6 SVREAASAGL 15
                7*****9877 PP

  == domain 2  score: 2.1 bits;  conditional E-value: 0.12
                 T-SSHHHHHHHHHHHHHHHHC CS
        HEAT  10 sDpspeVReaAakaLgalaev 30 
                  D+s   Re+++k+++++a++
  KOO22431.1 416 VDTSVILREMTVKSIVTIAPK 436
                 5888889***********986 PP

  == domain 3  score: 9.3 bits;  conditional E-value: 0.00058
                 HHHHHHHHT-SSHHHHHHHHHHHHHHHHC CS
        HEAT   2 lPlllkllsDpspeVReaAakaLgalaev 30 
                 + ++ kl  D+++ +R ++  +Lg++a +
  KOO22431.1 446 MRAFAKLQLDEEAAIRTNTTICLGKIAAH 474
                 778888768*****************987 PP

  == domain 4  score: 7.4 bits;  conditional E-value: 0.0023
                 HHHHHHHHHT-SSHHHHHHHHHHH CS
        HEAT   1 llPlllkllsDpspeVReaAakaL 24 
                 ++P +  +  D + +VReaA+ ++
  KOO22431.1 494 IVPNVAPMVLDVEKDVREAALACM 517
                 7899999999***********997 PP

>> HEAT_EZ  HEAT-like repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.4   0.0      0.38   9.8e+02       2      18 ..       6      22 ..       5      32 .. 0.73
   2 ?    2.0   0.0      0.12   3.1e+02      17      40 ..     360     378 ..     345     385 .. 0.79
   3 !    6.6   0.0    0.0045        11      18      55 .]     434     471 ..     422     471 .. 0.83
   4 ?    2.7   0.0     0.077     2e+02      26      51 ..     491     516 ..     481     546 .. 0.83

  Alignments for each domain:
  == domain 1  score: 0.4 bits;  conditional E-value: 0.38
     HEAT_EZ  2 rvRraAawaLGrlagge 18
                 vR+aA ++L  +a+++
  KOO22431.1  6 SVREAASAGLKMAASMA 22
                69*******96655444 PP

  == domain 2  score: 2.0 bits;  conditional E-value: 0.12
     HEAT_EZ  17 gepellqplvpeilpaLlalLndd 40 
                  e e+++++vp i+++++      
  KOO22431.1 360 SEEEYQEQVVPTIIKLFA-----N 378
                 477899999999999998.....4 PP

  == domain 3  score: 6.6 bits;  conditional E-value: 0.0045
     HEAT_EZ  18 epellqplvpeilpaLlalLnddsdeVRaaAagaLgnl 55 
                 +p l ++  + +++a+++l  d+++++R+++ ++Lg++
  KOO22431.1 434 APKLSSGTMQHVMRAFAKLQLDEEAAIRTNTTICLGKI 471
                 46666777778999999999****************97 PP

  == domain 4  score: 2.7 bits;  conditional E-value: 0.077
     HEAT_EZ  26 vpeilpaLlalLnddsdeVRaaAaga 51 
                  ++i+p  +++  d +++VR+aA+ +
  KOO22431.1 491 ATKIVPNVAPMVLDVEKDVREAALAC 516
                 56788888888888888888888754 PP

>> Cnd1  non-SMC mitotic condensation complex subunit 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.0   0.0      0.31     8e+02     110     157 ..      50      97 ..       8      99 .. 0.76
   2 ?   12.2   0.2   5.5e-05      0.14      18     105 ..     403     495 ..     391     533 .. 0.71

  Alignments for each domain:
  == domain 1  score: -0.0 bits;  conditional E-value: 0.31
        Cnd1 110 ecsewgqitilefLlsyipkdkqeaeslveklcprlqhansavvlaai 157
                 e +e     +  f+ + ++k++ e   lv++   rl++ +    l++i
  KOO22431.1  50 ENKEGVKEIVSIFMYDLKNKKSDEELALVKNAQRRLRTIKHPYLLRCI 97 
                 444444555556778888888889999999999999888887777776 PP

  == domain 2  score: 12.2 bits;  conditional E-value: 5.5e-05
        Cnd1  18 lveylvepLrkrLkDedpyVRktaaivvakL.ilndmvkekgflselaklleDenprVvanalaalteisek....senaiynllpdiiskls 105
                 + e + +pL  ++ D++   R+ ++  +  +  +     ++ ++  +akl  De++ +++n+ ++l +i+      + ++ y +  d++ k++
  KOO22431.1 403 INESIFQPLAMGFVDTSVILREMTVKSIVTIaPKLSSGTMQHVMRAFAKLQLDEEAAIRTNTTICLGKIAAHidaqTREKQYHSPMDVATKIV 495
                 678999*******************99999963344556677999999999******************998632222445555555555555 PP

>> Vac14_Fab1_bd  Vacuolar 14 Fab1-binding region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.1   0.0    0.0015       3.9      21      80 ..     361     418 ..     348     426 .. 0.83
   2 ?    2.3   0.0     0.099   2.5e+02      25      87 ..     404     463 ..     393     473 .. 0.76
   3 ?    1.0   0.1      0.26   6.8e+02      26      88 ..     492     513 ..     441     522 .. 0.65

  Alignments for each domain:
  == domain 1  score: 8.1 bits;  conditional E-value: 0.0015
  Vac14_Fab1_bd  21 ikeyleeivkpvlkcfsDkdsrvRyyacEslyniakvakgevlkllneifdalvklvaDs 80 
                     +ey e++v++++k f  +d+++R    E l  ++  + ++v++  ++if+ l   + D+
     KOO22431.1 361 EEEYQEQVVPTIIKLFANTDRQMRLPLLERLPSMVEHLSKKVIN--ESIFQPLAMGFVDT 418
                    57899**************************9999999999987..56777776666665 PP

  == domain 2  score: 2.3 bits;  conditional E-value: 0.099
  Vac14_Fab1_bd  25 leeivkpvlkcfsDkdsrvRyyacEslyniakvakgevlkllneifdalvklvaDsdesvksg 87 
                     e+i +p+   f D++  +R  ++ s+  ia ++ +  ++++ + f    kl  D+++ +++ 
     KOO22431.1 404 NESIFQPLAMGFVDTSVILREMTVKSIVTIAPKLSSGTMQHVMRAF---AKLQLDEEAAIRTN 463
                    4678888888899999999999999988888888777777666655...67788888888875 PP

  == domain 3  score: 1.0 bits;  conditional E-value: 0.26
  Vac14_Fab1_bd  26 eeivkpvlkcfsDkdsrvRyyacEslyniakvakgevlkllneifdalvklvaDsdesvksga 88 
                     +iv+                                          +  +v D++++v+++a
     KOO22431.1 492 TKIVPN-----------------------------------------VAPMVLDVEKDVREAA 513
                    334444.........................................4444555555555554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (604 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       634  (0.0353617); expected 358.6 (0.02)
Passed bias filter:                      535  (0.0298399); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.64u 0.30s 00:00:00.94 Elapsed: 00:00:00.49
# Mc/sec: 3738.92
//
Query:       KOO22432.1  [L=423]
Description: hypothetical protein Ctob_004137 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
      2e-19   69.8  38.1    2.1e-08   34.6   8.9    3.8  3  ShK             ShK domain-like
    6.5e-15   55.8   0.0    1.6e-14   54.5   0.0    1.7  1  2OG-FeII_Oxy_3  2OG-Fe(II) oxygenase superfamily
  ------ inclusion threshold ------
       0.22   12.0   0.0        5.6    7.4   0.0    2.2  2  ORF_12_N        ORF 12 gene product N-terminal


Domain annotation for each model (and alignments):
>> ShK  ShK domain-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.9   7.7   5.6e-12   3.3e-08       1      38 []      40      76 ..      40      76 .. 0.98
   2 !   13.1   5.6   1.8e-05      0.11       2      38 .]      88     123 ..      87     123 .. 0.92
   3 !   34.6   8.9   3.4e-12   2.1e-08       1      38 []     134     169 ..     134     169 .. 0.98

  Alignments for each domain:
  == domain 1  score: 33.9 bits;  conditional E-value: 5.6e-12
         ShK  1 tCtDps.sdCaswaalgfCtnptyrdlmkeqCpktCgfC 38
                tC+D +  +C +wa  g+C++++  ++m+e C ++Cg+C
  KOO22432.1 40 TCVDGNlENCKMWAEDGECEKNP--AYMRESCKRSCGMC 76
                7*****9****************..************** PP

  == domain 2  score: 13.1 bits;  conditional E-value: 1.8e-05
         ShK   2 CtDps.sdCaswaalgfCtnptyrdlmkeqCpktCgfC 38 
                 C D     C ++aa+g+C +++    m   C k+C  C
  KOO22432.1  88 CNDEEgYECEQRAAKGECHSNK--GEMLIRCMKSCDAC 123
                 77777689*************9..************99 PP

  == domain 3  score: 34.6 bits;  conditional E-value: 3.4e-12
         ShK   1 tCtDpssdCaswaalgfCtnptyrdlmkeqCpktCgfC 38 
                 +C+D++ +C +w+ +g+Ct+++   +m ++Cp  C  C
  KOO22432.1 134 GCEDKHNSCVMWKDNGECTRNP--GYMMDNCPVACEKC 169
                 5*********************..************99 PP

>> 2OG-FeII_Oxy_3  2OG-Fe(II) oxygenase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.5   0.0   2.7e-18   1.6e-14       1      96 []     299     403 ..     299     403 .. 0.84

  Alignments for each domain:
  == domain 1  score: 54.5 bits;  conditional E-value: 2.7e-18
                     -EEEEE-TT-EEEEE-SS--..--TT.-.EEEEEEEEE.......ET-B--EEE..........---TT-EEEEE-..B-T..........EEE- CS
  2OG-FeII_Oxy_3   1 lqvlrygegqeykpHvDnfe..keegsgqrrltvllyLne...keseeGGelelyekdkeavkikpkkgrlvlFesdellp..........Hevl 80 
                     +q+l+y++gq+yk H+D+++   +++ g r++t+++yLn+    ++e GG   +   ++  v ++ +kg +vl++s +             He+l
      KOO22432.1 299 FQILKYEPGQFYKVHHDQNSglFTPQ-GARVYTFFMYLNDvdeGQEEPGGGTHF---ADLGVVMPARKGHAVLWPSVMD-AepdrdepmtnHEGL 388
                     699**************999964444.79***********97644478888777...334678899**********543.36************* PP

                     -B.-SS-EEEEEEEEE CS
  2OG-FeII_Oxy_3  81 pvtkggeRlsltgwir 96 
                     p + ++ +++ ++wi+
      KOO22432.1 389 PPK-ASVKYASNVWIH 403
                     *95.56********98 PP

>> ORF_12_N  ORF 12 gene product N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.1   0.0     0.045   2.7e+02       2      48 ..     213     259 ..     212     265 .. 0.86
   2 ?    7.4   0.0   0.00094       5.6      35      66 ..     275     307 ..     270     314 .. 0.88

  Alignments for each domain:
  == domain 1  score: 2.1 bits;  conditional E-value: 0.045
    ORF_12_N   2 pdtpaGeqarWvldalnsdapiaaeevaerfsaeflaevpaeelaev 48 
                 p  p G  a Wv+++ n   + +ae +++  ++ f  ++  ++l+ v
  KOO22432.1 213 PGGPHGPNAPWVMSLRNFVSDEEAEAFTSTCKQHFDRSLAGDQLSPV 259
                 56789999*********999999999999999999999888888766 PP

  == domain 2  score: 7.4 bits;  conditional E-value: 0.00094
    ORF_12_N  35 eflaevpaeelaevla.qlraagPftvtsyegv 66 
                   l+++ ae++a+v++ q+r ++Pf + +ye++
  KOO22432.1 275 HRLTQIVAERIANVTRsQVRYMEPFQILKYEPG 307
                 56889999**********************975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (423 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       733  (0.0408835); expected 358.6 (0.02)
Passed bias filter:                      330  (0.0184059); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.51u 0.23s 00:00:00.74 Elapsed: 00:00:00.41
# Mc/sec: 3079.93
//
Query:       KOO22433.1  [L=230]
Description: hypothetical protein Ctob_004135, partial [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.4e-14   52.1  20.8     0.0018   18.2   0.2    6.9  7  LRR_6     Leucine Rich repeat
  ------ inclusion threshold ------
        1.3    9.4   4.9         13    6.2   0.4    3.1  3  HOASN     Haem-oxygenase-associated N-terminal helices
        4.9    7.7  15.5         14    6.3   1.7    4.5  4  LRR_4     Leucine Rich repeats (2 copies)


Domain annotation for each model (and alignments):
>> LRR_6  Leucine Rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.5   0.1     2e-05      0.12       5      24 .]       4      23 ..       3      23 .. 0.94
   2 !   18.2   0.2     3e-07    0.0018       2      24 .]      29      51 ..      28      51 .. 0.95
   3 ?    0.2   0.0      0.17     1e+03       5      12 ..      76      83 ..      76      87 .. 0.86
   4 ?   -1.6   0.1      0.64   3.8e+03       7      15 ..      99     107 ..      99     112 .. 0.76
   5 !   14.8   0.2   3.7e-06     0.022       5      24 .]     166     185 ..     165     185 .. 0.85
   6 !    9.8   0.0   0.00015      0.88       5      16 ..     194     205 ..     192     206 .. 0.91
   7 !    6.6   0.2    0.0015       9.1      13      24 .]     207     218 ..     207     218 .. 0.96

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 2e-05
       LRR_6  5 LteLdLsgNdIgDeGaeaLa 24
                +t L+L +N I +eGa+a+a
  KOO22433.1  4 VTILNLDSNMIRGEGAIAIA 23
                589***************98 PP

  == domain 2  score: 18.2 bits;  conditional E-value: 3e-07
       LRR_6  2 nthLteLdLsgNdIgDeGaeaLa 24
                n+ L+ L+++ N+I++eGa+ La
  KOO22433.1 29 NSVLKNLSVANNNIDGEGAQQLA 51
                899*****************998 PP

  == domain 3  score: 0.2 bits;  conditional E-value: 0.17
       LRR_6  5 LteLdLsg 12
                Lt+LdL+g
  KOO22433.1 76 LTKLDLRG 83
                89999985 PP

  == domain 4  score: -1.6 bits;  conditional E-value: 0.64
       LRR_6   7 eLdLsgNdI 15 
                 +L L+++++
  KOO22433.1  99 SLALKHCNL 107
                 588999995 PP

  == domain 5  score: 14.8 bits;  conditional E-value: 3.7e-06
       LRR_6   5 LteLdLsgNdIgDeGaeaLa 24 
                 Lt+L L gN+IgD+Ga+a+a
  KOO22433.1 166 LTKLFLCGNNIGDDGAKAIA 185
                 56666779**********98 PP

  == domain 6  score: 9.8 bits;  conditional E-value: 0.00015
       LRR_6   5 LteLdLsgNdIg 16 
                 +t+LdL++N+Ig
  KOO22433.1 194 VTTLDLNSNNIG 205
                 69*********9 PP

  == domain 7  score: 6.6 bits;  conditional E-value: 0.0015
       LRR_6  13 NdIgDeGaeaLa 24 
                 N+Ig +Ga+a+a
  KOO22433.1 207 NQIGAKGAIAIA 218
                 9*********98 PP

>> HOASN  Haem-oxygenase-associated N-terminal helices
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.6   0.3     0.014        85      18      43 ..      18      43 ..       8      59 .. 0.81
   2 ?    6.2   0.4    0.0022        13      14      42 ..     176     204 ..     171     221 .. 0.81
   3 ?   -1.4   0.0      0.51   3.1e+03      19      31 ..     214     226 ..     205     229 .. 0.74

  Alignments for each domain:
  == domain 1  score: 3.6 bits;  conditional E-value: 0.014
                HHHHHHHHTSTT--HHHHHHHHHHHH CS
       HOASN 18 eaalladalkvgasldqidlalekll 43
                 a  +a+alkv++ l+ + +a +++ 
  KOO22433.1 18 GAIAIAEALKVNSVLKNLSVANNNID 43
                56679************999988875 PP

  == domain 2  score: 6.2 bits;  conditional E-value: 0.0022
                 --SHHHHHHHHHTSTT--HHHHHHHHHHH CS
       HOASN  14 lpieeaalladalkvgasldqidlalekl 42 
                 +  + a+ +a+alk++a +  +dl  +++
  KOO22433.1 176 IGDDGAKAIAEALKIHAVVTTLDLNSNNI 204
                 55677899***********9999988776 PP

  == domain 3  score: -1.4 bits;  conditional E-value: 0.51
                 HHHHHHHTSTT-- CS
       HOASN  19 aalladalkvgas 31 
                 a  +a+alkv++ 
  KOO22433.1 214 AIAIAEALKVNTV 226
                 5678999999865 PP

>> LRR_4  Leucine Rich repeats (2 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.8   0.9    0.0068        40       4      36 ..       5      42 ..       4      45 .. 0.63
   2 ?    3.0   0.3     0.025   1.5e+02       3      14 ..      32      43 ..      30      51 .. 0.80
   3 ?    2.1   0.5     0.048   2.9e+02       3      36 ..      76     108 ..      74     110 .. 0.72
   4 ?    6.3   1.7    0.0024        14       3      35 ..     166     203 ..     165     210 .. 0.67

  Alignments for each domain:
  == domain 1  score: 4.8 bits;  conditional E-value: 0.0068
                -EEE--SS---E-S-HH.....H.-TT--EEE-.-S--- CS
       LRR_4  4 evLdLsnNqltdiplle.....k.lpnLkeLdLsgNnli 36
                ++L+L +N+++  + ++     k +  Lk L++ +N +i
  KOO22433.1  5 TILNLDSNMIRGEGAIAiaealKvNSVLKNLSVANN-NI 42
                678888888887777444455553444888888444.44 PP

  == domain 2  score: 3.0 bits;  conditional E-value: 0.025
                --EEE--SS--- CS
       LRR_4  3 LevLdLsnNqlt 14
                L++L+ +nN++ 
  KOO22433.1 32 LKNLSVANNNID 43
                788888888886 PP

  == domain 3  score: 2.1 bits;  conditional E-value: 0.048
                 --EEE--SS---E-S-HHH-TT--EEE-...-S--- CS
       LRR_4   3 LevLdLsnNqltdiplleklpnLkeLdL..sgNnli 36 
                 L++LdL++  +   + l  l +L +++L   ++nl+
  KOO22433.1  76 LTKLDLRG--VGVSGALI-LSDLLKFSLalKHCNLL 108
                 99999999..77666788.88888888655666665 PP

  == domain 4  score: 6.3 bits;  conditional E-value: 0.0024
                 --EEE--SS---E-S-..HH...H-TT.--EEE-.-S-- CS
       LRR_4   3 LevLdLsnNqltdipl..le...klpn.LkeLdLsgNnl 35 
                 L++L L +N++ d +   ++   k+    ++LdL++N +
  KOO22433.1 166 LTKLFLCGNNIGDDGAkaIAealKIHAvVTTLDLNSN-N 203
                 8899999999997444552245567777888999666.2 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (230 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       319  (0.0177924); expected 358.6 (0.02)
Passed bias filter:                      232  (0.0129399); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.42u 0.27s 00:00:00.69 Elapsed: 00:00:00.43
# Mc/sec: 1616.14
//
Query:       KOO22434.1  [L=420]
Description: h+-translocating pyrophosphatase family [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   4.4e-133  445.2  22.7   5.2e-133  445.0  22.7    1.0  1  H_PPase   Inorganic H+ pyrophosphatase


Domain annotation for each model (and alignments):
>> H_PPase  Inorganic H+ pyrophosphatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  445.0  22.7  2.9e-137  5.2e-133     146     504 ..       3     388 ..       1     392 [. 0.95

  Alignments for each domain:
  == domain 1  score: 445.0 bits;  conditional E-value: 2.9e-137
                 HHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHTCHHHHTS---TT-TT-TTHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHH.........SH CS
     H_PPase 146 kllellvgfglGaslvalfarvgGGiytKaADvGaDLvGKveagipEDdprnpaviADnvGDnvGDvaGmgADlfesyvasivaamvlg........aa 236
                 +l+e+++gfglG+s++a+f rvgGGiytKaADvGaDL GKv +++pEDd  np++iADnvGDnvGDvaGmg+Dlf+s+ ++ vaa+++g        a 
  KOO22434.1   3 NLMEVVAGFGLGGSCIAMFGRVGGGIYTKAADVGADLAGKVVQDLPEDDVHNPGTIADNVGDNVGDVAGMGSDLFGSFGEASVAALLVGassagiyaAG 101
                 57899************************************************************************************9888766538 PP

                 HHHHHHHHHHHHHHHHHHHHHHHHH.......HHSS--HHHHHHHHHHHHHHHHHHHHHHHHH-S.................-TTTTSHHHHHHHHHHH CS
     H_PPase 237 vklvllpllvaavgilasiigillvktkedasskkkeellkaLkkgllvsavlsvvlvallslll.................keaaalklflavlvGlv 318
                   ++++pl+v+++gi+a+i++ +++  ++   ++++++++k Lk++llvs++l++ +v++ls++l                    + lk++l+v++Gl+
  KOO22434.1 102 WGALMYPLVVSGAGIIACIVTNYFA--TDFFPVREENDIEKVLKTQLLVSSLLMTPVVYYLSITLlpaatcgecvggfvvgnVCSSPLKAALCVIFGLW 198
                 899*********************9..33334667788********************99999777889999999999999955789************ PP

                 HHHHHHHHHHHHH-TTSHHHHHHHHHGGG-HHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHH CS
     H_PPase 319 agllivllteyytsteykpvkeiaeasetGaatniisGlavgmestvlpvlviavaillsyllaglygialaavgmLstlgitlavdayGPiaDNAggi 417
                  g++i+++te++ts +ykpv+++a++++tGaatnii Gla+g++s++lpv+++++ ++ ++++ag+ygialaa+gmLs l++tl++d yGP++DNAggi
  KOO22434.1 199 GGCAIGFITEFFTSFSYKPVQDVADSCRTGAATNIIYGLALGYKSVILPVFILSAIVFGAHTIAGFYGIALAALGMLSNLATTLSIDVYGPVCDNAGGI 297
                 *************************************************************************************************** PP

                 HHHHT--SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT....HHCS--BTTSHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
     H_PPase 418 aemseleeevreitdklDavGNttkAitKgfaigsAalaalaLfaaylee....aklekvdllnpevlvglliGamlvflfsaltmkaVgk 504
                 aem+el+++vre+td+lDa+GNtt+Ai+KgfaigsA l+ laLf a++++     ++++vdll+p +++gll+G+ml+++fsa+tmk+Vg 
  KOO22434.1 298 AEMCELHPSVREKTDALDAAGNTTAAIGKGFAIGSACLVGLALFGAFVTRlndaGAAQAVDLLDPITFAGLLVGSMLPYWFSAMTMKSVGL 388
                 **************************************************999855789******************************95 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (420 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       642  (0.0358079); expected 358.6 (0.02)
Passed bias filter:                      353  (0.0196888); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.50u 0.24s 00:00:00.74 Elapsed: 00:00:00.42
# Mc/sec: 3032.68
//
Query:       KOO22435.1  [L=209]
Description: comm domain-containing protein 2 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.7e-08   34.5   0.0    2.3e-08   34.0   0.0    1.2  1  COMM_domain  COMM domain


Domain annotation for each model (and alignments):
>> COMM_domain  COMM domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.0   0.0   1.3e-12   2.3e-08       1      66 [.     130     196 ..     130     202 .. 0.92

  Alignments for each domain:
  == domain 1  score: 34.0 bits;  conditional E-value: 1.3e-12
  COMM_domain   1 lpqLvdldWrldvqlssssl.skvneptalleLklqngsgnsenvtlelskeqLqeLlneLeeiqkq 66 
                  lp ++ l+Wrl v+l+ +   +k +e ++ll+L+++ g + + ++ ++ + ++L+ L +eLee++k+
   KOO22435.1 130 LPEYRGLEWRLQVELGGRYRsRKAPEASFLLRLHTSGGPEGTAEHLMQADLPNLRRLASELEEALKE 196
                  6999************999967***************9887888*********************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (209 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       568  (0.0316805); expected 358.6 (0.02)
Passed bias filter:                      460  (0.0256568); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.26s 00:00:00.69 Elapsed: 00:00:00.42
# Mc/sec: 1501.44
//
Query:       KOO22436.1  [L=142]
Description: hypothetical protein Ctob_004141 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (142 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       315  (0.0175693); expected 358.6 (0.02)
Passed bias filter:                      263  (0.014669); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.39u 0.26s 00:00:00.65 Elapsed: 00:00:00.42
# Mc/sec: 1016.93
//
Query:       KOO22437.1  [L=305]
Description: hypothetical protein Ctob_004140 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (305 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       823  (0.0459033); expected 358.6 (0.02)
Passed bias filter:                      350  (0.0195214); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.45u 0.23s 00:00:00.68 Elapsed: 00:00:00.40
# Mc/sec: 2316.18
//
Query:       KOO22438.1  [L=194]
Description: hypothetical protein Ctob_004144 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.7e-20   73.1   0.2    2.1e-20   72.8   0.2    1.1  1  PRA1      PRA1 family protein
    8.7e-07   28.7   0.2    1.5e-06   28.0   0.2    1.4  1  UBA       UBA/TS-N domain
     0.0082   15.9   0.7      0.016   15.0   0.7    1.5  1  HTH_8     Bacterial regulatory protein, Fis family
  ------ inclusion threshold ------
       0.11   12.5   0.4       0.17   11.9   0.4    1.2  1  HOIP-UBA  HOIP UBA domain pair


Domain annotation for each model (and alignments):
>> PRA1  PRA1 family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   72.8   0.2   4.8e-24   2.1e-20       4     138 ..      50     180 ..      48     184 .. 0.92

  Alignments for each domain:
  == domain 1  score: 72.8 bits;  conditional E-value: 4.8e-24
        PRA1   4 aplRpwsefldlsrfslPkslskatsRvkkNllyfrtNYlivvllvlllslltnplslivllllvlawlflyflr.seplvlfgrelsdrvvlivllvv 101
                  + +pwsef+  ++f  P   + + +R+++Nlly+r NY+i+  +++ +s l +p  l +l + +++ +       + p +l    l+ ++ l++ l+ 
  KOO22438.1  50 RNQQPWSEFF--DKFLWP---EHLHERIETNLLYYRANYAIICGAIVGISALQQPKLLALLGASIALHYGASEWDgRMPAELNMAPLRLNQRLVIALIG 143
                 5789******..9*****...88899*****************************999999999999999999887888888889999999999999** PP

        PRA1 102 svlllfltgavlvllwalliglllvllHAsfrkrndk 138
                 s ll+ +++a+++++ + ++ + +vl HAsfr r ++
  KOO22438.1 144 SSLLVNWLDATATVMRVSVLCAGVVLGHASFRARTLN 180
                 ********************************99875 PP

>> UBA  UBA/TS-N domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.0   0.2   3.3e-10   1.5e-06      12      37 .]       1      26 [.       1      26 [. 0.98

  Alignments for each domain:
  == domain 1  score: 28.0 bits;  conditional E-value: 3.3e-10
                TTS-HHHHHHHHHHTTTSHHHHHHHH CS
         UBA 12 MGFdreevveALratgnNeErAveyL 37
                MGF+  e++ AL+at +N+ErA+e L
  KOO22438.1  1 MGFSVVEARLALEATSGNVERAAELL 26
                ***********************987 PP

>> HTH_8  Bacterial regulatory protein, Fis family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.7   3.5e-06     0.016      13      33 ..      11      31 ..       9      32 .. 0.91

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 3.5e-06
                HHHHTTT-HHHHHHHHTS-HH CS
       HTH_8 13 ALertgGnkskAArlLGisRr 33
                ALe+t Gn+ +AA+lL  +Rr
  KOO22438.1 11 ALEATSGNVERAAELLKAHRR 31
                9***************87776 PP

>> HOIP-UBA  HOIP UBA domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.4   3.8e-05      0.17      73     103 ..       3      33 ..       1      37 [. 0.90

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 3.8e-05
    HOIP-UBA  73 lsraEakealleagGdvekAvkqclreRrkK 103
                 +s  Ea+ al ++ G+ve+A++ +  +Rr++
  KOO22438.1   3 FSVVEARLALEATSGNVERAAELLKAHRRER 33 
                 6889******************999999875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (194 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       513  (0.0286129); expected 358.6 (0.02)
Passed bias filter:                      369  (0.0205812); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.38u 0.23s 00:00:00.61 Elapsed: 00:00:00.36
# Mc/sec: 1613.98
//
Query:       KOO22439.1  [L=284]
Description: hypothetical protein Ctob_002479 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      6e-20   71.3   1.8    8.5e-20   70.8   1.8    1.2  1  BACK      BTB And C-terminal Kelch


Domain annotation for each model (and alignments):
>> BACK  BTB And C-terminal Kelch
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.8   1.8   4.7e-24   8.5e-20       2     103 .]      11     113 ..      10     113 .. 0.94

  Alignments for each domain:
  == domain 1  score: 70.8 bits;  conditional E-value: 4.7e-24
        BACK   2 lgilefAeaysceeLaeaakefilknfeevlkseeFleLskeqllellssdeLnvesEeevfeavlkWvkhdeee.rkkhlpelLekvRlpllspeyLk 99 
                 ++ +++A+ + ++eL+++a e++  +f+++++s+ +l+ +++ +l ll +deL+v++Ee vf+a+++Wv+ +e + +++ +++l+++vR+plls ++++
  KOO22439.1  11 IESWDLADRLMLSELSSHALEYVSFHFQTIAASDAWLSAPLQLVLRLLPQDELEVKEEEAVFRAAVRWVRAQERQpNESEMRSLFAAVRFPLLSFSFVQ 109
                 56789****************************************************************99876527889*****************99 PP

        BACK 100 evve 103
                 ++v+
  KOO22439.1 110 SQVQ 113
                 9885 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (284 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       287  (0.0160076); expected 358.6 (0.02)
Passed bias filter:                      247  (0.0137766); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.22s 00:00:00.61 Elapsed: 00:00:00.36
# Mc/sec: 2377.42
//
Query:       KOO22440.1  [L=443]
Description: pkhd domain-containing transmembrane protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.4e-08   35.5   0.1    4.7e-08   33.8   0.1    1.8  2  2OG-FeII_Oxy_3  2OG-Fe(II) oxygenase superfamily


Domain annotation for each model (and alignments):
>> 2OG-FeII_Oxy_3  2OG-Fe(II) oxygenase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.8   0.1   2.6e-12   4.7e-08      12      93 ..     289     367 ..     282     370 .. 0.87
   2 ?   -2.2   0.0      0.44     8e+03      64      80 ..     413     432 ..     388     440 .. 0.67

  Alignments for each domain:
  == domain 1  score: 33.8 bits;  conditional E-value: 2.6e-12
                     EEEE-SS----TT.-.EEEEEEEEE.....ET-B--EEE...........---TT-EEEEE-..B-TEEE--B.-SS-EEEEEE CS
  2OG-FeII_Oxy_3  12 ykpHvDnfekeegsgqrrltvllyLne.keseeGGelelyekdk.eavkikpkkgrlvlFesdellpHevlpvtkggeRlsltg 93 
                      + H+D +     + +  ++ ++ Lne  +++ GGele+ ++++   + ++p  gr+++F+s+  + H+++p t+g +R++l++
      KOO22440.1 289 SNYHCDES----LAPHFHFSSIVWLNEhGADFGGGELEFLHNRTwAWMVVEPAVGRAAFFSSGWENVHGIKPLTRG-QRWALSV 367
                     56799964....55789*********987779*******99999999999************99999******886.****975 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 0.44
                     T-EEEEE-..B-T...EEE- CS
  2OG-FeII_Oxy_3  64 grlvlFesdellp...Hevl 80 
                      + v F+s++++p   H+ +
      KOO22440.1 413 TDRVRFRSNCVHPvdkHAYQ 432
                     44578999999666666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (443 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       306  (0.0170673); expected 358.6 (0.02)
Passed bias filter:                      223  (0.0124379); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.25s 00:00:00.71 Elapsed: 00:00:00.41
# Mc/sec: 3272.11
//
Query:       KOO22441.1  [L=1031]
Description: hypothetical protein Ctob_002474 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1031 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       422  (0.0235373); expected 358.6 (0.02)
Passed bias filter:                      309  (0.0172346); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.68u 0.30s 00:00:00.98 Elapsed: 00:00:00.47
# Mc/sec: 6609.73
//
Query:       KOO22442.1  [L=338]
Description: upf0602 protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    8.3e-48  164.1  17.4      1e-47  163.8  17.4    1.0  1  DUF4586   Domain of unknown function (DUF4586)


Domain annotation for each model (and alignments):
>> DUF4586  Domain of unknown function (DUF4586)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  163.8  17.4   5.6e-52     1e-47       1     298 [.       4     329 ..       4     332 .. 0.89

  Alignments for each domain:
  == domain 1  score: 163.8 bits;  conditional E-value: 5.6e-52
     DUF4586   1 sdlerlGlFsepsylsvgDpYkdpiskrklnesaekgkqml...pggskkkgkgqdgyFdk....kFlrlfegepytdpvklrrrerleekkknigdka 92 
                 +dl+r+G+Fs ps+  vg+pY+d +++    +s +kg q++   p + +  ++ ++g + k     F+rl+ege++++++k++ ++  ee+k+n++++ 
  KOO22442.1   4 TDLQRFGTFSMPSFGGVGEPYQDGQQS----DSRTKGGQFItnnPRKGQLGDNWNRGKYGKipvgTFKRLYEGEKHKEEYKIMMEAATEEAKRNLTTNG 98 
                 599******************877777....68889999996543334445555666666555577********************************* PP

     DUF4586  93 FlpssgpkkpsGlGsyyGtfggpipafss.......avkkkkkkkksekkNilTnPgkkGtGyGyagvtlgks...............yeyssdeydre 169
                 F +ss pkk+sG+G+yyGt+ g+ + f +       ++ +k++++++e+++i+ +P kkG G +++g ++g+                y++s d+yd++
  KOO22442.1  99 FRYSSKPKKSSGVGDYYGTIAGHKQPFPHmqdyevlKHGEKPEPVTHELQQIKNSPMKKGYGASTPGCIFGPGplqgesglgkyggreYKHSVDPYDAA 197
                 ********************999777777777**999999********************************99************************* PP

     DUF4586 170 kklekkereekhkkklkG.kpFkstlvpkdyfdenpYke..dkpl...ppgkkeatkekevkapkaepakefkpsspakklgggkaGtfnpFPeysadp 262
                 +  ek+ +++k k+ ++G +++k+ +++ d+fd+  Yk    + +    p  +e   +++v  ++ae+   f+p++++k   +g +Gtf++FP+y +dp
  KOO22442.1 198 RLKEKE-MMAKDKEAIAGrPAYKTMSHSVDFFDQPTYKCasSA-IfteNPRLPERPPKSTVVGKYAEHDRAFRPAQAPK---SGPQGTFEKFPKYIEDP 291
                 998888.8888***********************999886433.247777777778888888888899999********...***************** PP

     DUF4586 263 yeeekkkekrkvkekka..kkvFkPssgpkstptkSvv 298
                  ++++k++k++  +++     +FkP++   s p  S++
  KOO22442.1 292 LDLKIKEAKEEAAKNRIegAAPFKPTGTGNSIPQPSIL 329
                 ****99999888888877789*****9999******97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (338 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       459  (0.025601); expected 358.6 (0.02)
Passed bias filter:                      376  (0.0209716); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.26s 00:00:00.70 Elapsed: 00:00:00.40
# Mc/sec: 2514.93
//
Query:       KOO22443.1  [L=365]
Description: hypothetical protein Ctob_002484 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.09   12.7   0.0       0.17   11.8   0.0    1.4  1  DUF5033   Domain of unknown function (DUF5033)
       0.14   12.2   3.3       0.44   10.6   1.0    2.6  2  DUF730    Protein of unknown function (DUF730)


Domain annotation for each model (and alignments):
>> DUF5033  Domain of unknown function (DUF5033)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   1.9e-05      0.17      18     106 ..      46     138 ..      28     169 .. 0.73

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 1.9e-05
     DUF5033  18 GaesvtynnsdlkdvPavsleemdevLeaLrkntnake....ecesesvegy..kkvkmtaeyqaatrggatlekfaltvelnlnvdkdgsvyYi 106
                 Ga +v   +++ + + + ++e+ +++ e +r+   a+     e ++ + e +  +  km++e+qaa+r+ a  e+ a+ +  +++  ++g + ++
  KOO22443.1  46 GAAYVK--QTERGMIASALAEQRRGLEEEIRQSKLATDtqqaELRRAAEERHkrEMEKMLEEVQAAQRALAAAEEKAFVLARKFENTREGRIDFM 138
                 444444..78888899999999999999999975444300014445555555656679***************************9999988655 PP

>> DUF730  Protein of unknown function (DUF730)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   1.0     5e-05      0.44      76     111 ..      95     130 ..      90     143 .. 0.84
   2 ?    0.5   0.0     0.065   5.9e+02      60     100 ..     189     213 ..     162     248 .. 0.66

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 5e-05
      DUF730  76 ikeektemkkdleaakkrvesqaekiflmekkfetl 111
                  k e+ +m ++++aa++ + +  ek f++ +kfe  
  KOO22443.1  95 HKREMEKMLEEVQAAQRALAAAEEKAFVLARKFENT 130
                 589999***************************954 PP

  == domain 2  score: 0.5 bits;  conditional E-value: 0.065
      DUF730  60 gfkrwwtvalcdefdkikeektemkkdleaakkrvesqaek 100
                  f rw t+                k dlea  k    qaek
  KOO22443.1 189 AFSRWTTL----------------KADLEALAKLRAEQAEK 213
                 55555554................44444444333333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (365 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2082  (0.116125); expected 358.6 (0.02)
Passed bias filter:                      451  (0.0251548); expected 358.6 (0.02)
Passed Vit filter:                        59  (0.00329076); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.62u 0.29s 00:00:00.90 Elapsed: 00:00:00.46
# Mc/sec: 2406.26
//
Query:       KOO22444.1  [L=119]
Description: hypothetical protein Ctob_002485, partial [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (119 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       221  (0.0123264); expected 358.6 (0.02)
Passed bias filter:                      115  (0.00641419); expected 358.6 (0.02)
Passed Vit filter:                         6  (0.000334653); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.26s 00:00:00.60 Elapsed: 00:00:00.40
# Mc/sec: 894.31
//
Query:       KOO22445.1  [L=598]
Description: imidazole glycerol phosphate glutamine amidotransferase subunit [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.6e-45  155.4   0.8    1.1e-44  152.7   0.8    2.4  1  His_biosynth   Histidine biosynthesis protein
    2.6e-23   82.8   0.0    3.8e-23   82.2   0.0    1.3  1  GATase         Glutamine amidotransferase class-I
    3.9e-08   33.1   0.0    6.5e-08   32.4   0.0    1.3  1  GATase_3       CobB/CobQ-like glutamine amidotransferase doma
    9.4e-07   28.9   0.0    1.3e-05   25.1   0.0    2.2  1  SNO            SNO glutamine amidotransferase family
  ------ inclusion threshold ------
       0.01   15.6   0.1       0.23   11.2   0.0    2.2  2  Peptidase_C26  Peptidase C26
          1    8.6   3.6       0.34   10.2   0.2    1.9  2  ThiG           Thiazole biosynthesis protein ThiG


Domain annotation for each model (and alignments):
>> His_biosynth  Histidine biosynthesis protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  152.7   0.8   3.6e-48   1.1e-44       1     228 [.     231     536 ..     231     537 .. 0.86

  Alignments for each domain:
  == domain 1  score: 152.7 bits;  conditional E-value: 3.6e-48
                   EEEEEEEE...ETTEEEEECTTCS..........TCEEEETTSHHHHHHHHHHHT-SEEEEEEHHHHC...TTHHHHHHHHHHHHHH-SSEEEEESS CS
  His_biosynth   1 riipalDl...kdGkvVrlvkGdr..........fqelryagdpvelakryeeegadelhvvDldaak...egreanldlveeiaeevfipvqvGGG 81 
                   r+i ++D+   + G  V  +kGd+            + r  g+pv lak+y+e+gade++++ +++ +    + + ++d+++e  +e+f+p++vGGG
    KOO22445.1 231 RVIACMDVranDAGDLV-CTKGDQydvreksasgGGAVRNLGKPVVLAKKYYEQGADEITFLNITGFRdcpLSDTPMIDVIREASKEIFVPLTVGGG 326
                   79******666667888.9999999999999998889999***************************94444677889******************* PP

                   ...........SSSHHHHHHHHHCT-SEEEESHH............HHH-THHHHHHHHHHCGGGEEEEEEEEE..........C............ CS
  His_biosynth  82 ...........Irsledveelleagadkviigta............avknpelikelaekfgsqkivvaiDarr..........g............ 133
                               + le ++++++agadk++ig+              ++ +  i+++++ +g+q++vv++D rr          g            
    KOO22445.1 327 irgfvdangvsSSALEVANAYFRAGADKISIGSDavdvareylrtkKLDGSTSIEQISHVYGRQAVVVSVDPRRrwitsrdaaqGhaivdhsvapls 423
                   44443333322224677889999**********95555555444444455667*********************88887777661556666677777 PP

                   .................EEEEETTTTEEEEEEHHHHHHHHHHTT-SEEEEEETTTTTTSS---HHHHHHHHHHHSSEEEEESS--SHHHHHHHH.HT CS
  His_biosynth 134 .................ykvaikgwreetgldavelakkleelgageilltdidrdGtlsGpdleltkelaeavkipviasGGvgsledlkelk.se 212
                                    y+++++g+r+ +++d+v+la ++e lg+ge+l++ id+dG  +G+dl l+k+++eav+ipvias G+g+++++ +++ ++
    KOO22445.1 424 csapgglrgpqgetlcwYECTVQGGRKGSDIDVVQLATAVEALGCGELLVNCIDHDGQNDGYDLGLLKSIREAVSIPVIASSGAGNPQHFVDVFrAS 520
                   777778899999**********************************************************************************999 PP

                   TCSEEEESHHHHTTSS CS
  His_biosynth 213 gvdavivgsalyegel 228
                   gv+a +++s+++++ +
    KOO22445.1 521 GVEAGLAASIFHKNIV 536
                   99**********9876 PP

>> GATase  Glutamine amidotransferase class-I
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   82.2   0.0   1.3e-26   3.8e-23       2     186 ..       5     201 ..       4     205 .. 0.82

  Alignments for each domain:
  == domain 1  score: 82.2 bits;  conditional E-value: 1.3e-26
                 EEESSTSTHHHHHHHHHHTT-EEEEEETTSHHHHHHHTHHSTSEEEEEEESSCTT.......TTTHHHHHHHHCTSTS-EEEETHHHHHHHHHTTT... CS
      GATase   2 liDnydsvtenlvhalvelgvkvevvpidasaeeilellknpdgilvsgGpgspg.......vegkieaikearenkiPiLGICLGmQllaiefgr... 90 
                 ++D++++++ +l++al+++g++v++++     +ei     +   +l+ +G+gs g         g ++a++ +  +++P++GICLGmQ l++++ +   
  KOO22445.1   5 VVDYGAGNVASLLNALAAIGCEVDIINTA---DEI-----TNARVLIFPGVGSFGacmevleQRGWMAALRAYVRADKPYFGICLGMQTLFEASEEspg 95 
                 79***********************9955...444.....3689*************9998855556666666666********************999 PP

                 ...............EEEEEECEEEEEEEEEEEETTTCGGTTTTSEEEEEEEEEEEEESGCHHHTTEEEEEEEETTEEEEEEEEETTTEEEESSBTTST CS
      GATase  91 ...............kvvkekekehhggtmrlgddetallyglknevierhrHryevnpkelepaglevtakseddeelmeiiekknpfvgvQFHPEst 174
                                 v  +   ++ g++   g+++++ l+g +++  +++ H++ +       + +  t ++  +e+++  +++ + +v++QFHPE++
  KOO22445.1  96 iaglgllpgtiarfkGVGGRA-VPQIGWNTVHGQQPSHMLEGVSDDDAVYFVHSFRAGL-TAALEPWALTTTD-YGEKYVSSVQRGR-VVACQFHPEKS 190
                 999999998777774444555.9*********************************997.4455556666666.5568888888887.*********87 PP

                 TSTTHHHHHHHH CS
      GATase 175 stpegpellfnf 186
                     g ++l nf
  KOO22445.1 191 GAI-GLRILSNF 201
                 654.47777776 PP

>> GATase_3  CobB/CobQ-like glutamine amidotransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.4   0.0   2.2e-11   6.5e-08      25     115 ..      25     106 ..       3     122 .. 0.87

  Alignments for each domain:
  == domain 1  score: 32.4 bits;  conditional E-value: 2.2e-11
    GATase_3  25 vrvrfvplkdeslgedadlvilpGgkdtiqdlallresgldeaikeaaeaggpvlgiCGGlqmLGeeiedpegvegeageveglglLdiet 115
                  +v +++ + +++++ a+++i+pG  +  + +++l+++g+  a++++++a++p +giC G+q L e  e++ g+        glglL+ ++
  KOO22445.1  25 CEVDIIN-TADEITN-ARVLIFPGVGSFGACMEVLEQRGWMAALRAYVRADKPYFGICLGMQTLFEASEESPGI-------AGLGLLPGTI 106
                 4567777.7778866.**************************************************99888765.......9999999775 PP

>> SNO  SNO glutamine amidotransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.1   0.0   4.4e-09   1.3e-05       6     184 ..      11     203 ..       9     206 .. 0.70

  Alignments for each domain:
  == domain 1  score: 25.1 bits;  conditional E-value: 4.4e-09
                 SSHHHHHHHHHHTTSEEEEE-SGGGGCC-SEEEE-SS-H.HHHHHHHHHTT-HHHHHHHHHTT.--EEEETHHHHHHCCEETTB.SS-SS--CCEEEET CS
         SNO   6 GaveehveaikkclaenktvkrkedlaevdaliiPGGes.tamskliertglyedllefvknsekvvlGtCaGlillskelene.lvktlellkvkvkr 102
                 G+v    +a+ + + e   + + +++ +   li PG  s  a   ++e+ g++ +l+++v+   k+ +G C G+  l +  e++  +  l+ll  ++ r
  KOO22445.1  11 GNVASLLNALAAIGCEVDIINTADEITNARVLIFPGVGSfGACMEVLEQRGWMAALRAYVRAD-KPYFGICLGMQTLFEASEESpGIAGLGLLPGTIAR 108
                 667777889999999999******************55527889999*************977.***********9999888888999*****999988 PP

                 ..TTT-SCCGEEEEE.EEETTTC.........SEEEEEESS-..-EEEEE-.TTTCEEEEECTTEEEEEEET.TEEEESS-GGGSTT.HCHHHHHHHH CS
         SNO 103 ..nafGrqvdsfeke.ldfknli.........ekftavfira..Pvieeilddeavkvlyeldgeivvakqk.kilatsfhPelaed.dirvhdyfve 184
                      Gr v     + ++ +  +         ++    f+ +    +  +l++ a +    ++ + v+  q+ +++a+ fhPe +   + r+   fv+
  KOO22445.1 109 fkGVGGRAVPQIGWNtVHGQ--QpshmlegvsDDDAVYFVHSfrAGLTAALEPWALTTTDYGE-KYVSSVQRgRVVACQFHPEKSGAiGLRILSNFVR 203
                 32345776654332201111..11122234434444444433113456677676666555555.6666665559999999999876436777777776 PP

>> Peptidase_C26  Peptidase C26
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   7.8e-05      0.23      96     118 ..      64      86 ..      58      92 .. 0.88
   2 ?    2.0   0.0     0.049   1.5e+02     184     216 .]     156     188 ..     118     188 .. 0.75

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 7.8e-05
  Peptidase_C26  96 aLiraalergvPilgiCrGlqll 118
                    a +ra +++++P +giC+G+q l
     KOO22445.1  64 AALRAYVRADKPYFGICLGMQTL 86 
                    6678999**************98 PP

  == domain 2  score: 2.0 bits;  conditional E-value: 0.049
  Peptidase_C26 184 elrveAvaeDgviEaieseeakafvlgvQwHPE 216
                     l+  A ++ +  E + s  ++  v++ Q+HPE
     KOO22445.1 156 ALEPWALTTTDYGEKYVSSVQRGRVVACQFHPE 188
                    555666666555566666666889********9 PP

>> ThiG  Thiazole biosynthesis protein ThiG
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.4       1.2   3.5e+03     179     206 ..       5      33 ..       4      41 .. 0.78
   2 ?   10.2   0.2   0.00012      0.34     156     205 ..     480     529 ..     454     564 .. 0.70

  Alignments for each domain:
  == domain 1  score: -3.0 bits;  conditional E-value: 1.2
                 EEES---SHHHHHHHH.HTT-SEEEESHH CS
        ThiG 179 ivDAGigspsdaaqam.elGadavllnta 206
                 +vD G g+     +a+  +G++  ++nta
  KOO22445.1   5 VVDYGAGNVASLLNALaAIGCEVDIINTA 33 
                 79999999888888873589999999998 PP

  == domain 2  score: 10.2 bits;  conditional E-value: 0.00012
                 TS----S-HHHHHHHHHH-SS-BEEES---SHHHHHHHHH.TT-SEEEESH CS
        ThiG 156 GsglGllnkealkiiieeakvPvivDAGigspsdaaqame.lGadavllnt 205
                 G + G  +   lk i+e +++Pvi   G g+p++ + ++   G++a l ++
  KOO22445.1 480 GQNDGY-DLGLLKSIREAVSIPVIASSGAGNPQHFVDVFRaSGVEAGLAAS 529
                 555554.456799*********************99987524777776655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (598 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       391  (0.0218082); expected 358.6 (0.02)
Passed bias filter:                      351  (0.0195772); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.59u 0.25s 00:00:00.84 Elapsed: 00:00:00.42
# Mc/sec: 4323.75
//
Query:       KOO22446.1  [L=469]
Description: hsp70 interacting protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    2.6e-06   27.1   6.5     0.0088   16.1   0.2    3.6  3  TPR_2        Tetratricopeptide repeat
    8.3e-06   25.4   6.7     0.0077   16.0   0.1    3.5  3  TPR_1        Tetratricopeptide repeat
    1.6e-05   25.3   3.6     0.0031   18.2   0.1    3.1  2  TPR_14       Tetratricopeptide repeat
    3.6e-05   24.3   9.0     0.0073   16.9   0.2    3.2  3  TPR_16       Tetratricopeptide repeat
      6e-05   23.2   0.4     0.0016   18.7   0.1    2.6  2  TPR_17       Tetratricopeptide repeat
    0.00058   19.5   0.7      0.061   13.0   0.1    2.5  2  TPR_11       TPR repeat
     0.0036   17.8   3.6       0.19   12.2   0.5    2.5  2  TPR_19       Tetratricopeptide repeat
     0.0054   16.9   0.6      0.012   15.7   0.6    1.6  1  TPR_9        Tetratricopeptide repeat
  ------ inclusion threshold ------
      0.025   14.8   2.2          7    7.1   0.1    3.4  3  TPR_8        Tetratricopeptide repeat
      0.084   12.9   0.3        2.9    8.1   0.1    2.7  2  TPR_7        Tetratricopeptide repeat
      0.086   13.1   2.2        1.4    9.3   0.1    2.5  2  TPR_12       Tetratricopeptide repeat
       0.15   12.6   0.1        1.1    9.8   0.1    2.1  2  Gly_radical  Glycine radical
        2.3    8.3  10.4        1.2    9.2   1.3    3.1  3  zf-CCHH      PBZ domain


Domain annotation for each model (and alignments):
>> TPR_2  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.8   0.3   0.00067      0.92       8      32 ..     283     307 ..     279     309 .. 0.85
   2 !   16.1   0.2   6.4e-06    0.0088       3      33 ..     311     341 ..     309     342 .. 0.93
   3 ?    3.2   0.1     0.087   1.2e+02       1      21 [.     343     363 ..     343     366 .. 0.84

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.00067
       TPR_2   8 GlayyklgdyeeAleafekAleldP 32 
                 ++ ++  gd+e+A++a+ kAl   P
  KOO22446.1 283 AQEAAGEGDHERAARAYTKALVATP 307
                 6667889**************8777 PP

  == domain 2  score: 16.1 bits;  conditional E-value: 6.4e-06
       TPR_2   3 alynlGlayyklgdyeeAleafekAleldPn 33 
                 ++  +++ ++klg +  A++++ kAlel+P+
  KOO22446.1 311 LYAKRAETLLKLGFPSAAAADCHKALELNPD 341
                 6889**************************8 PP

  == domain 3  score: 3.2 bits;  conditional E-value: 0.087
       TPR_2   1 aealynlGlayyklgdyeeAl 21 
                 a+a   lG+a+ k+gd++ A 
  KOO22446.1 343 AKAFKVLGKALSKKGDFATAY 363
                 577888***********9886 PP

>> TPR_1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.6   0.3     0.011        15      14      28 ..     289     303 ..     283     305 .. 0.89
   2 !   16.0   0.1   5.6e-06    0.0077       3      33 ..     311     341 ..     309     342 .. 0.91
   3 !    5.9   0.1    0.0089        12       1      20 [.     343     362 ..     343     364 .. 0.92

  Alignments for each domain:
  == domain 1  score: 5.6 bits;  conditional E-value: 0.011
                 TT-HHHHHHHHHHHH CS
       TPR_1  14 lgkydeAleyyekAL 28 
                  g+++ A  +y kAL
  KOO22446.1 289 EGDHERAARAYTKAL 303
                 69************9 PP

  == domain 2  score: 16.0 bits;  conditional E-value: 5.6e-06
                 HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT CS
       TPR_1   3 alynlGnayfklgkydeAleyyekALelnPn 33 
                  +  ++ +++klg +  A +++ kALelnP+
  KOO22446.1 311 LYAKRAETLLKLGFPSAAAADCHKALELNPD 341
                 688899999*********************8 PP

  == domain 3  score: 5.9 bits;  conditional E-value: 0.0089
                 HHHHHHHHHHHHHTT-HHHH CS
       TPR_1   1 akalynlGnayfklgkydeA 20 
                 aka++ lG a+ k+g++  A
  KOO22446.1 343 AKAFKVLGKALSKKGDFATA 362
                 899**************988 PP

>> TPR_14  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.7   0.5     0.011        16      12      33 ..     287     308 ..     275     311 .. 0.78
   2 !   18.2   0.1   2.2e-06    0.0031       3      43 ..     311     351 ..     309     353 .. 0.93

  Alignments for each domain:
  == domain 1  score: 6.7 bits;  conditional E-value: 0.011
      TPR_14  12 lalGdpdeAiallrralalaPd 33 
                 +  Gd+++A++++ +al + P+
  KOO22446.1 287 AGEGDHERAARAYTKALVATPS 308
                 33589************99996 PP

  == domain 2  score: 18.2 bits;  conditional E-value: 2.2e-06
      TPR_14   3 allalaeallalGdpdeAiallrralalaPddaeawlllaq 43 
                 +++++ae ll lG p +A+a +++al+l+Pd+a a   l++
  KOO22446.1 311 LYAKRAETLLKLGFPSAAAADCHKALELNPDSAKAFKVLGK 351
                 7899*******************************999987 PP

>> TPR_16  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.1   0.0      0.47   6.5e+02       9      27 ..      42      60 ..      41      64 .. 0.84
   2 !    9.4   1.6    0.0012       1.7       2      32 ..     281     308 ..     280     314 .. 0.87
   3 !   16.9   0.2   5.3e-06    0.0073       2      53 ..     314     362 ..     313     368 .. 0.94

  Alignments for each domain:
  == domain 1  score: 1.1 bits;  conditional E-value: 0.47
      TPR_16  9 ragdyddAaaaleaalkrd 27
                ++++y+dA+++   al r 
  KOO22446.1 42 YNKKYPDAEPLTADALSRV 60
                6899*******99999876 PP

  == domain 2  score: 9.4 bits;  conditional E-value: 0.0012
      TPR_16   2 alaraalragdyddAaaaleaalkrdpssPd 32 
                 ++a++a+  gd ++Aa+a++ al +    P 
  KOO22446.1 281 MEAQEAAGEGDHERAARAYTKALVAT---PS 308
                 68999*****************9999...65 PP

  == domain 3  score: 16.9 bits;  conditional E-value: 5.3e-06
      TPR_16   2 alaraalragdyddAaaaleaalkrdpssPdaaeAllllgdaalrqgrlaeA 53 
                 ++a  +l++g + +Aaa  + al+++   Pd a A   lg a+ ++g++a A
  KOO22446.1 314 KRAETLLKLGFPSAAAADCHKALELN---PDSAKAFKVLGKALSKKGDFATA 362
                 57899*********************...********************987 PP

>> TPR_17  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.8   0.0      0.28   3.9e+02      12      27 ..     308     323 ..     298     324 .. 0.84
   2 !   18.7   0.1   1.1e-06    0.0016       4      32 ..     334     362 ..     332     364 .. 0.96

  Alignments for each domain:
  == domain 1  score: 1.8 bits;  conditional E-value: 0.28
      TPR_17  12 nadaynnLAelllknG 27 
                 +a +y  +Ae+llk+G
  KOO22446.1 308 SAMLYAKRAETLLKLG 323
                 5889********9987 PP

  == domain 2  score: 18.7 bits;  conditional E-value: 1.1e-06
      TPR_17   4 kaleldPnnadaynnLAelllknGdlmtA 32 
                 kalel+P++a+a+  L+++l+k+Gd++tA
  KOO22446.1 334 KALELNPDSAKAFKVLGKALSKKGDFATA 362
                 8*************************999 PP

>> TPR_11  TPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.3   0.1     0.023        31       8      42 .]     290     323 ..     288     323 .. 0.79
   2 !   13.0   0.1   4.4e-05     0.061      19      42 .]     334     357 ..     327     357 .. 0.94

  Alignments for each domain:
  == domain 1  score: 4.3 bits;  conditional E-value: 0.023
      TPR_11   8 GkyeeAieaYkkAlkldPdnaeayynLGlayykqG 42 
                 G+ e A  aY kAl  +P+ a +y +++++++k+G
  KOO22446.1 290 GDHERAARAYTKALVATPS-AMLYAKRAETLLKLG 323
                 99************99996.556666666666665 PP

  == domain 2  score: 13.0 bits;  conditional E-value: 4.4e-05
      TPR_11  19 kAlkldPdnaeayynLGlayykqG 42 
                 kAl+l+Pd+a a+  LG+a+ k+G
  KOO22446.1 334 KALELNPDSAKAFKVLGKALSKKG 357
                 8*******************9998 PP

>> TPR_19  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.8   1.2     0.007       9.6       2      43 ..     287     327 ..     286     330 .. 0.78
   2 !   12.2   0.5   0.00014      0.19       7      51 ..     325     369 ..     319     389 .. 0.78

  Alignments for each domain:
  == domain 1  score: 6.8 bits;  conditional E-value: 0.007
      TPR_19   2 laegdyaeAlalleqalqedpk.naearllLAeallalgqlde 43 
                   egd+++A++++++al + p  +++a+   Ae ll+lg + +
  KOO22446.1 287 AGEGDHERAARAYTKALVATPSaMLYAKR--AETLLKLGFPSA 327
                 579*************8777754666666..999999995555 PP

  == domain 2  score: 12.2 bits;  conditional E-value: 0.00014
      TPR_19   7 yaeAlalleqalqedpknaearllLAeallalgqldeAealLdal 51 
                 + +A+a   +al+ +p++a a   L +al + g+++ A a L + 
  KOO22446.1 325 PSAAAADCHKALELNPDSAKAFKVLGKALSKKGDFATAYAKLCTG 369
                 6799999****************************9997655555 PP

>> TPR_9  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.6   9.1e-06     0.012       6      65 ..     287     345 ..     283     349 .. 0.90

  Alignments for each domain:
  == domain 1  score: 15.7 bits;  conditional E-value: 9.1e-06
       TPR_9   6 ireedweralavverllllaPddpeerrdRGlllaqlGclsaAladLeaylalapdapda 65 
                 + e d+era +++   l+  P +  ++  R+  l +lG +saA+ad   +l+l+pd + a
  KOO22446.1 287 AGEGDHERAARAYTKALVATPSA-MLYAKRAETLLKLGFPSAAAADCHKALELNPDSAKA 345
                 67899*********999888865.9******************************99877 PP

>> TPR_8  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.2   0.0     0.043        60      12      28 ..     287     303 ..     281     308 .. 0.85
   2 ?    7.1   0.1    0.0051         7       4      33 ..     312     341 ..     310     342 .. 0.94
   3 ?    1.1   0.1      0.43     6e+02       7      20 ..     349     362 ..     343     366 .. 0.86

  Alignments for each domain:
  == domain 1  score: 4.2 bits;  conditional E-value: 0.043
                 HHTT-HHHHHHHHHHHH CS
       TPR_8  12 lklgdyeeAkeyyekal 28 
                    gd+e A  +y kal
  KOO22446.1 287 AGEGDHERAARAYTKAL 303
                 568*************8 PP

  == domain 2  score: 7.1 bits;  conditional E-value: 0.0051
                 HHHHHHHHHHTT-HHHHHHHHHHHHHHHHH CS
       TPR_8   4 yynlgsiylklgdyeeAkeyyekaleldpd 33 
                 y + + ++lklg   +A + + kalel+pd
  KOO22446.1 312 YAKRAETLLKLGFPSAAAADCHKALELNPD 341
                 8999*************************8 PP

  == domain 3  score: 1.1 bits;  conditional E-value: 0.43
                 HHHHHHHTT-HHHH CS
       TPR_8   7 lgsiylklgdyeeA 20 
                 lg++++k+gd+  A
  KOO22446.1 349 LGKALSKKGDFATA 362
                 899*******9877 PP

>> TPR_7  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.1   0.1    0.0021       2.9      12      27 ..     289     305 ..     283     311 .. 0.82
   2 ?    1.9   0.0      0.21   2.8e+02       5      18 ..     349     362 ..     345     366 .. 0.87

  Alignments for each domain:
  == domain 1  score: 8.1 bits;  conditional E-value: 0.0021
       TPR_7  12 lGdyeeAielyeqsL.a 27 
                 +Gd+e+A++ y+++L a
  KOO22446.1 289 EGDHERAARAYTKALvA 305
                 69***********7744 PP

  == domain 2  score: 1.9 bits;  conditional E-value: 0.21
       TPR_7   5 LarlysrlGdyeeA 18 
                 L+ + s+ Gd+++A
  KOO22446.1 349 LGKALSKKGDFATA 362
                 99**********99 PP

>> TPR_12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.7   0.4      0.11   1.6e+02      34      71 ..     285     302 ..     275     303 .. 0.58
   2 ?    9.3   0.1     0.001       1.4       5      64 ..     310     362 ..     307     364 .. 0.89

  Alignments for each domain:
  == domain 1  score: 2.7 bits;  conditional E-value: 0.11
      TPR_12  34 rrllGpdhpltattlrnLgrlyralgryeeAlelleea 71 
                 +++ +                    g++e A +++++a
  KOO22446.1 285 EAAGE--------------------GDHERAARAYTKA 302
                 44444....................5555555555555 PP

  == domain 2  score: 9.3 bits;  conditional E-value: 0.001
      TPR_12   5 aln.nlaavlrrlgrydeAlellekaleiarrllGpdhpltattlrnLgrlyralgryeeA 64 
                 +l+ ++a++l++lg    A + ++kale+      pd+   a +   Lg ++++ g+++ A
  KOO22446.1 310 MLYaKRAETLLKLGFPSAAAADCHKALELN-----PDS---AKAFKVLGKALSKKGDFATA 362
                 455369************************.....997...99**************9887 PP

>> Gly_radical  Glycine radical
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.2   0.0      0.78   1.1e+03      18      75 ..     282     340 ..     270     352 .. 0.76
   2 ?    9.8   0.1   0.00082       1.1       8      55 ..     354     401 ..     350     414 .. 0.86

  Alignments for each domain:
  == domain 1  score: 0.2 bits;  conditional E-value: 0.78
                  HCCCCCCTSECGCETTEETTECCCCHHHHHH.HCC-CCCCCCHHCCCCCCT-SECEEEE CS
  Gly_radical  18 aslnSvakldyevaldgislnlkavpdalgk.eeeerienlatlldgyfeggfhlnvnv 75 
                  ++ + +++ d+e+a      +l a+p+a+ + ++ e + +l  +  +  ++   l++n 
   KOO22446.1 282 EAQEAAGEGDHERAARAYTKALVATPSAMLYaKRAETLLKLGFPSAAAADCHKALELNP 340
                  45555677788888888888999999999998889999999999888888887777776 PP

  == domain 2  score: 9.8 bits;  conditional E-value: 0.00082
                  HCCHHHCHCHHCCCCCCTSECGCETTEETTECCCCHHHHHHHCC-CCC CS
  Gly_radical   8 megrdkegplaslnSvakldyevaldgislnlkavpdalgkeeeerie 55 
                  +++ d+  ++a+l  + k+dy+  + + + +lka  d l+k +e+r +
   KOO22446.1 354 SKKGDFATAYAKLCTGNKIDYDEDSTEFQKTLKAKLDKLKKIGEQRAR 401
                  578899********************************9886666554 PP

>> zf-CCHH  PBZ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.2   1.3   0.00087       1.2       2      11 ..     140     149 ..     139     149 .. 0.93
   2 ?   -0.3   0.9      0.78   1.1e+03      16      25 ..     166     175 ..     164     176 .. 0.86
   3 ?    3.3   0.0     0.061        84      15      26 .]     226     237 ..     224     237 .. 0.92

  Alignments for each domain:
  == domain 1  score: 9.2 bits;  conditional E-value: 0.00087
     zf-CCHH   2 PpCkYGkkCY 11 
                 P+CkYG kC+
  KOO22446.1 140 PKCKYGLKCR 149
                 9********8 PP

  == domain 2  score: -0.3 bits;  conditional E-value: 0.78
     zf-CCHH  16 qHfqefsHPg 25 
                 qH  +f+HP+
  KOO22446.1 166 QHWFKFQHPC 175
                 89999****6 PP

  == domain 3  score: 3.3 bits;  conditional E-value: 0.061
     zf-CCHH  15 pqHfqefsHPgd 26 
                 p H++ f HP+d
  KOO22446.1 226 PIHRRCFIHPED 237
                 89********97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (469 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       729  (0.0406604); expected 358.6 (0.02)
Passed bias filter:                      518  (0.0288917); expected 358.6 (0.02)
Passed Vit filter:                        54  (0.00301188); expected 17.9 (0.001)
Passed Fwd filter:                        15  (0.000836633); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 0.58u 0.24s 00:00:00.82 Elapsed: 00:00:00.42
# Mc/sec: 3382.45
//
Query:       KOO22447.1  [L=363]
Description: hypothetical protein Ctob_002481 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.013   15.0   0.3       0.05   13.2   0.1    2.0  2  EF-hand_1  EF hand
      0.017   15.0   0.1       0.19   11.7   0.0    2.4  2  EF-hand_6  EF-hand domain
      0.018   15.8   0.1      0.018   15.8   0.1    2.6  2  KIAA1430   KIAA1430 homologue
      0.079   13.0   0.1       0.33   11.0   0.0    2.1  2  Vma12      Endoplasmic reticulum-based factor for assembly of


Domain annotation for each model (and alignments):
>> EF-hand_1  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.1   1.1e-05      0.05       9      25 ..      12      28 ..      11      31 .. 0.92
   2 ?   -2.4   0.0         1   4.6e+03      16      28 ..     232     244 ..     232     245 .. 0.82

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 1.1e-05
                HTTTSSSEEEHHHHHHH CS
   EF-hand_1  9 fDkDgdGkIdfeEfkel 25
                +D+Dg+G I+ +E+++l
  KOO22447.1 12 YDVDGNGVIEENELVDL 28
                8*************986 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 1
                 EEEHHHHHHHHHH CS
   EF-hand_1  16 kIdfeEfkellkk 28 
                 +++++E ++ l+k
  KOO22447.1 232 YLTIDEVVATLQK 244
                 7899**9998876 PP

>> EF-hand_6  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   4.2e-05      0.19       9      25 ..      12      28 ..      10      33 .. 0.90
   2 ?    0.1   0.0      0.23     1e+03      16      28 ..     232     244 ..     228     251 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 4.2e-05
   EF-hand_6  9 fDkdgdGkidaeElrka 25
                +D+dg+G i  +El+++
  KOO22447.1 12 YDVDGNGVIEENELVDL 28
                9*************987 PP

  == domain 2  score: 0.1 bits;  conditional E-value: 0.23
   EF-hand_6  16 kidaeElrkalrk 28 
                 +++++E+++ l+k
  KOO22447.1 232 YLTIDEVVATLQK 244
                 89******99984 PP

>> KIAA1430  KIAA1430 homologue
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   3.4       2.1   9.2e+03      89      89 ..     197     197 ..     130     233 .. 0.55
   2 ?   15.8   0.1   4.1e-06     0.018      39     101 ..     281     342 ..     273     343 .. 0.78

  Alignments for each domain:
  == domain 1  score: -2.5 bits;  conditional E-value: 2.1
    KIAA1430  89 k 89 
                 +
  KOO22447.1 197 E 197
                 1 PP

  == domain 2  score: 15.8 bits;  conditional E-value: 4.1e-06
    KIAA1430  39 eiereNqiLleklseimrrkgkkksassqsqksktasksl...naenrkkelqkIeeENqkllkRl 101
                 ++ +eN  L  ++++i  r +     + + +   +a+ ++   + +n+k++++k++ +N+++ +R+
  KOO22447.1 281 QVAKENAALYARIHNIAARTDV----DISDEAAGAARGTMaeeSDANKKEKAKKLAAQNKAFHRRI 342
                 7889****************54....3334444444444444457999999**************9 PP

>> Vma12  Endoplasmic reticulum-based factor for assembly of V-ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   7.4e-05      0.33      12      73 ..      48     163 ..      39     210 .. 0.78
   2 ?   -1.5   0.3      0.54   2.4e+03      38      45 ..     289     296 ..     252     354 .. 0.50

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 7.4e-05
       Vma12  12 ppppkpepspE......................................................ykallarLraeqeereYkrlinsvdpsqksgktd 56 
                  p pk +p+pE                                                      yka+ ++L+ e  + +Y++ ++++++++++++ +
  KOO22447.1  48 RPAPKVAPTPEteerhqaalaltsrsapsfaqllisffgagdeslprvsssdkaamvatevqkanYKASAEKLLPEGYNGSYNAVVQQMNSHRAEETRQ 146
                 56678888888888999999999999999999999999999999999999999999999999999***********************88766655554 PP

       Vma12  57 s....psssddeltaqelkev 73 
                 +    +    del ++e k +
  KOO22447.1 147 DiavwQ----DELQNEEQKYM 163
                 432211....33333333333 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 0.54
       Vma12  38 eYkrlins 45 
                  Y r+ n 
  KOO22447.1 289 LYARIHNI 296
                 34444333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (363 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1768  (0.0986112); expected 358.6 (0.02)
Passed bias filter:                      429  (0.0239277); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.52u 0.27s 00:00:00.79 Elapsed: 00:00:00.44
# Mc/sec: 2494.35
//
Query:       KOO22448.1  [L=335]
Description: hypothetical protein Ctob_002482 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00074   18.9   1.1      0.011   15.1   0.1    2.0  2  AKAP2_C    A-kinase anchor protein 2 C-terminus
  ------ inclusion threshold ------
       0.15   12.5   2.6        1.3    9.5   0.0    2.7  3  TetR_C_28  Tetracyclin repressor-like, C-terminal domain


Domain annotation for each model (and alignments):
>> AKAP2_C  A-kinase anchor protein 2 C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.1   1.2e-06     0.011      14     137 ..      90     226 ..      83     250 .. 0.82
   2 !    2.5   0.1     0.008        72     212     235 ..     261     284 ..     252     288 .. 0.90

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 1.2e-06
     AKAP2_C  14 peapkrrdrgrpslyi.QreieqetqReedlrre.Glqeg.........rastpdtrsedpqpglrralssdsilskvpdarakdp.apeirkvnripe 100
                 p ++++r+rg+ps+y+  re++ +    ++++   G              a++p+ ++ed++++ r     +s+ s++ d+  + +  p +r  +r+ +
  KOO22448.1  90 PPKDPPRVRGQPSAYVaARELVLAFSNSAEHADLpGSASHcpinvdieyAAAQPKAAAEDDGAEKRELRHASSTSSAARDPAVQPAlRPGTRPPTRLDQ 188
                 566779*********955**************9967766699******99***************************99998876515667789***** PP

     AKAP2_C 101 dayqpylepgtpklefsavk.sygkgsklsteeakava 137
                 +a + y+ ++  ++ f + +   gk+++  +  +k+++
  KOO22448.1 189 QAWDMYVYQTPGSNTFYGAWgFDGKPARHDEFFTKEAK 226
                 *********88888888888788999884444444433 PP

  == domain 2  score: 2.5 bits;  conditional E-value: 0.008
     AKAP2_C 212 apalrkqrsqasellerEvkevle 235
                 ++alr  + +  e+le+E++ +l+
  KOO22448.1 261 SYALREFYLKQTEILENEMRAMLR 284
                 68999999**************97 PP

>> TetR_C_28  Tetracyclin repressor-like, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   0.0   0.00014       1.3      59      88 ..      69      98 ..      53     100 .. 0.83
   2 ?   -3.0   0.2       1.2   1.1e+04      20      31 ..     154     165 ..     138     177 .. 0.43
   3 ?    2.2   0.2     0.027   2.5e+02      42      65 ..     295     319 ..     271     327 .. 0.72

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 0.00014
                HHHHHHHHHHHHHHHHSSS---HHHHHHHH CS
   TetR_C_28 59 tlvrlAadGlwlaellglppldpeeraall 88
                  vr A+dG + a+l+ l+++ p +  +++
  KOO22448.1 69 AFVRRAVDGTFEADLFALDDIPPKDPPRVR 98
                469*******************99877776 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 1.2
                 HHHHHHHGGGSH CS
   TetR_C_28  20 laallaalaedp 31 
                  + l  a +++ 
  KOO22448.1 154 KRELRHASSTSS 165
                 223333333333 PP

  == domain 3  score: 2.2 bits;  conditional E-value: 0.027
                 HHH..S--TTGG-HHHHHHHHHHHHH CS
   TetR_C_28  42 rrw..lerleadgldpvlatlvrlAa 65 
                  rw  l+rle ++++ +la+lv+lAa
  KOO22448.1 295 CRWtvLRRLE-QEPPRRLAQLVLLAA 319
                 5663344555.566678999999997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (335 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       404  (0.0225333); expected 358.6 (0.02)
Passed bias filter:                      331  (0.0184617); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.48u 0.24s 00:00:00.72 Elapsed: 00:00:00.42
# Mc/sec: 2403.18
//
Query:       KOO22449.1  [L=565]
Description: carbohydrate binding module (family 6) [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0034   16.3   0.0      0.005   15.7   0.0    1.1  1  Trehalase  Trehalase
  ------ inclusion threshold ------
       0.13   12.2   0.0       0.23   11.4   0.0    1.2  1  Stn1_C     Telomere capping C-terminal wHTH
        1.3    9.5   5.1        2.5    8.6   0.0    3.3  4  TetR_C_28  Tetracyclin repressor-like, C-terminal domain


Domain annotation for each model (and alignments):
>> Trehalase  Trehalase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.0   8.4e-07     0.005     309     360 ..     177     228 ..     152     231 .. 0.95

  Alignments for each domain:
  == domain 1  score: 15.7 bits;  conditional E-value: 8.4e-07
                 HHHHHHHHHHHHHHCCCHCC-CCHHHHHHHHHHHHHHHHHHHCEETTTTEE- CS
   Trehalase 309 LNallyklekdiaefedklgdsetseefeekaekrkkaidkvLWneeagvyl 360
                 +N++++     +  ++++lg++++++ +e++a+k+++ +++ LW++e g+++
  KOO22449.1 177 INSVMFGEAIALRSIAAALGNTSRAAYYEREARKWQAVLTDQLWSDELGFFV 228
                 69*****999999**********************************99985 PP

>> Stn1_C  Telomere capping C-terminal wHTH
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   3.8e-05      0.23       9      50 ..     450     491 ..     444     493 .. 0.93

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 3.8e-05
      Stn1_C   9 elfadllakLaklglisledasnvidlkpLknlkeYiqkris 50 
                 + f++  ++L+ +gl+ ++++ + ++l+pL ++ +++ +r++
  KOO22449.1 450 HYFHSTFNDLVLSGLVGVRTHAKFLELHPLTRVRSFCATRLW 491
                 5799999*********************************87 PP

>> TetR_C_28  Tetracyclin repressor-like, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.4   0.0     0.076   4.5e+02      62      92 ..     107     137 ..      98     148 .. 0.80
   2 ?   -3.3   0.2       2.2   1.3e+04      25      48 ..     192     215 ..     184     220 .. 0.59
   3 ?   -2.9   0.0       1.6   9.6e+03       4      46 ..     386     399 ..     382     412 .. 0.51
   4 ?    8.6   0.0   0.00042       2.5      49      73 ..     528     553 ..     517     562 .. 0.84

  Alignments for each domain:
  == domain 1  score: 1.4 bits;  conditional E-value: 0.076
                 HHHHHHHHHHHHHSSS---HHHHHHHHHHHH CS
   TetR_C_28  62 rlAadGlwlaellglppldpeeraallerLl 92 
                 + Aa  lw  +ll  ++ ++   a+l+ +L 
  KOO22449.1 107 WWAAYALWQRSLLHHSQSSAGVQAELFGHLD 137
                 6788888888888888888888888888875 PP

  == domain 2  score: -3.3 bits;  conditional E-value: 2.2
                 HHGGGSHHHHHHHHHHHHHHS--T CS
   TetR_C_28  25 aalaedpellepwrewyrrwlerl 48 
                 aa++ +   ++ +++  r+w++ l
  KOO22449.1 192 AAALGNTSRAAYYEREARKWQAVL 215
                 555555555555555666665544 PP

  == domain 3  score: -2.9 bits;  conditional E-value: 1.6
                 HHHHHHHHTS-..-HHHHHHHHHGGGSHHHHHHHHHHHHHHS- CS
   TetR_C_28   4 traYlratfdeeerallaallaalaedpellepwrewyrrwle 46 
                 +r Y ra                             + r++ e
  KOO22449.1 386 LRRYARA-----------------------------HTRSHAE 399
                 4444444.............................2222222 PP

  == domain 4  score: 8.6 bits;  conditional E-value: 0.00042
                 TGG-HH.HHHHHHHHHHHHHHHHHHH CS
   TetR_C_28  49 eadgld.pvlatlvrlAadGlwlael 73 
                  +++ d  vla +vr A dG w+a+ 
  KOO22449.1 528 PHEQHDgHVLAPVVRVAYDGSWMADC 553
                 556666699**************985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (565 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       354  (0.0197445); expected 358.6 (0.02)
Passed bias filter:                      283  (0.0157845); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.53u 0.25s 00:00:00.78 Elapsed: 00:00:00.43
# Mc/sec: 3932.88
//
Query:       KOO22450.1  [L=334]
Description: hypothetical protein Ctob_002488 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    0.00011   22.7   0.0    0.00026   21.5   0.0    1.6  1  Asp_protease_2   Aspartyl protease
     0.0017   18.9   0.7     0.0078   16.8   0.1    2.0  2  gag-asp_proteas  gag-polyprotein putative aspartyl protease


Domain annotation for each model (and alignments):
>> Asp_protease_2  Aspartyl protease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.5   0.0     3e-08   0.00026      10      65 ..     203     257 ..     196     276 .. 0.81

  Alignments for each domain:
  == domain 1  score: 21.5 bits;  conditional E-value: 3e-08
  Asp_protease_2  10 vrfllDTGas.ttlispelaeklglkvreseltvrvsgaggevkarlvrldslklgg 65 
                      + llDTG    t+i+p++a+++g+ + +  l v+++g++g ++  ++++  +++ g
      KOO22450.1 203 GHGLLDTGNAaITMINPQTAAAAGIAPNPG-LAVQIRGVNGVSEYPTATV-HIRIRG 257
                     5679****98469************99998.69********999988877.456655 PP

>> gag-asp_proteas  gag-polyprotein putative aspartyl protease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.3   0.0      0.18   1.6e+03      24      71 ..      94     143 ..      93     157 .. 0.59
   2 !   16.8   0.1   8.7e-07    0.0078      12      90 ..     205     279 ..     201     280 .. 0.80

  Alignments for each domain:
  == domain 1  score: -0.3 bits;  conditional E-value: 0.18
                      EHHHHHHTTGGGGEB..T...T--EE-TTST.T-EEEEEEEEEE.EETTEEE CS
  gag-asp_proteas  24 seelaerlglsrkedkgk...vevktangev.eakrvrldsvkiggielrnv 71 
                      +++la+++g+s+ + ++    ++++t+ g++ e+  +r+++ +  +  ++ v
       KOO22450.1  94 PASLARAAGVSKGVIAEWfawRRATTGEGDQgEGDAGRVARAQAAQ--AHAV 143
                      5677888888888877532225566666655466666666666543..3334 PP

  == domain 2  score: 16.8 bits;  conditional E-value: 8.7e-07
                      EEEETT.-SS-EEEHHHHHHTTGGGGEB..TT--EE-TTSTT-EEEEEEEEEE.EETTEEEEEEEEEESSSSEEEEHHHH CS
  gag-asp_proteas  12 flvDTG.AsstiiseelaerlglsrkedkgkvevktangeveakrvrldsvkiggielrnvsavvlegelddlLLGldfL 90 
                       l+DTG A  t+i++++a ++g+ +++    v+++ +ng+ e  ++++  ++i g+e r v+a++    ++ +L G d L
       KOO22450.1 205 GLLDTGnAAITMINPQTAAAAGIAPNPG-LAVQIRGVNGVSEYPTATV-HIRIRGVERR-VTAAIG--GAQGVLVGEDTL 279
                      59****999*****************95.7899999999988776665.6899998877.777775..456667776665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (334 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       531  (0.0296168); expected 358.6 (0.02)
Passed bias filter:                      383  (0.021362); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.46u 0.26s 00:00:00.72 Elapsed: 00:00:00.44
# Mc/sec: 2303.42
//
Query:       KOO22451.1  [L=406]
Description: calcium-dependent protein kinase 20-like protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.5e-27   93.1   5.3     0.0018   18.1   0.0    7.8  8  EF-hand_6     EF-hand domain
    2.3e-26   89.3   0.8    0.00041   19.7   0.2    7.6  7  EF-hand_1     EF hand
    2.4e-25   88.8   0.3    1.1e-10   41.8   0.3    5.2  5  EF-hand_7     EF-hand domain pair
    4.5e-19   67.0   3.8     0.0037   16.7   0.0    6.5  6  EF-hand_5     EF hand
    5.1e-19   67.9   3.3      3e-09   36.6   0.4    5.6  6  EF-hand_8     EF-hand domain pair
     0.0017   18.6   0.0       0.49   10.7   0.0    3.7  4  SPARC_Ca_bdg  Secreted protein acidic and rich in cysteine Ca
     0.0052   16.6   2.9        9.6    6.2   0.0    4.3  5  EF-hand_10    EF hand
     0.0064   16.8   0.1       0.47   10.8   0.0    3.3  4  EF-hand_9     EF-hand domain


Domain annotation for each model (and alignments):
>> EF-hand_6  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.6   0.0   4.6e-05       0.1       6      25 ..      16      35 ..      11      37 .. 0.87
   2 !   15.0   0.2   7.4e-06     0.017       5      26 ..      51      72 ..      48      74 .. 0.91
   3 !   13.2   0.1   2.9e-05     0.066       2      30 ..      84     112 ..      83     113 .. 0.84
   4 !   18.1   0.0     8e-07    0.0018       4      29 ..     120     144 ..     118     147 .. 0.92
   5 ?    3.2   0.0     0.048   1.1e+02      12      27 ..     211     226 ..     200     232 .. 0.81
   6 !   17.2   0.0   1.5e-06    0.0034       3      27 ..     241     265 ..     239     269 .. 0.92
   7 ?   -3.1   0.0       4.9   1.1e+04      17      27 ..     289     299 ..     288     300 .. 0.83
   8 !    7.7   0.0    0.0017       3.9       7      28 ..     314     336 ..     310     344 .. 0.82

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 4.6e-05
   EF-hand_6  6 FklfDkdgdGkidaeElrka 25
                F + D+d++G+++++E+r++
  KOO22451.1 16 FFAADVDNSGSLTMDEFRRL 35
                7788*************975 PP

  == domain 2  score: 15.0 bits;  conditional E-value: 7.4e-06
   EF-hand_6  5 aFklfDkdgdGkidaeElrkal 26
                +F+  D dg+G+i+ +E+  +l
  KOO22451.1 51 LFERCDLDGSGTISLDEFFMFL 72
                799***************8776 PP

  == domain 3  score: 13.2 bits;  conditional E-value: 2.9e-05
   EF-hand_6   2 lreaFklfD.kdgdGkidaeElrkalrkal 30 
                 l+++F+ +D k  dG++da+E+++a   +l
  KOO22451.1  84 LDAIFRRYDqKGTDGTLDAAEFQHAAE-DL 112
                 6789*****677999********9977.55 PP

  == domain 4  score: 18.1 bits;  conditional E-value: 8e-07
   EF-hand_6   4 eaFklfDkdgdGkidaeElrkalrka 29 
                 ++F ++D +g+G++d +El +al+ +
  KOO22451.1 120 DLFAELDPSGSGTVDGSELLSALK-L 144
                 89*********************9.5 PP

  == domain 5  score: 3.2 bits;  conditional E-value: 0.048
   EF-hand_6  12 dgdGkidaeElrkalr 27 
                   +G+++ ++l +al 
  KOO22451.1 211 GANGTLSEAQLGRALE 226
                 579***********98 PP

  == domain 6  score: 17.2 bits;  conditional E-value: 1.5e-06
   EF-hand_6   3 reaFklfDkdgdGkidaeElrkalr 27 
                 r +F+++D+dg+G i + +l +++r
  KOO22451.1 241 RGLFEQMDTDGSGVIGQRDLYAWMR 265
                 568********************99 PP

  == domain 7  score: -3.1 bits;  conditional E-value: 4.9
   EF-hand_6  17 idaeElrkalr 27 
                 +++e lrkal+
  KOO22451.1 289 WTPETLRKALQ 299
                 68899999997 PP

  == domain 8  score: 7.7 bits;  conditional E-value: 0.0017
   EF-hand_6   7 klfDkd.gdGkidaeElrkalrk 28 
                 +++D + +dG i+++E++++ +k
  KOO22451.1 314 RAWDSSaNDGAISRHEFISHVKK 336
                 67787779**********99885 PP

>> EF-hand_1  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.0   5.3e-06     0.012       4      26 ..      14      36 ..      11      38 .. 0.88
   2 !   19.7   0.2   1.8e-07   0.00041       5      26 ..      51      72 ..      47      74 .. 0.88
   3 !    8.7   0.0   0.00058       1.3       2      26 ..      84     109 ..      83     112 .. 0.87
   4 !   15.3   0.0   4.6e-06      0.01       4      27 ..     120     143 ..     119     145 .. 0.93
   5 ?   -0.9   0.0       0.7   1.6e+03      14      28 ..     213     227 ..     212     228 .. 0.89
   6 !   14.2   0.0     1e-05     0.023       3      27 ..     241     265 ..     239     267 .. 0.89
   7 !    6.1   0.0     0.004       8.9      13      28 ..     321     336 ..     321     337 .. 0.90

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 5.3e-06
                HHHHHHTTTSSSEEEHHHHHHHH CS
   EF-hand_1  4 eiFrefDkDgdGkIdfeEfkell 26
                e F  +D+D++G ++ +Ef++l+
  KOO22451.1 14 EQFFAADVDNSGSLTMDEFRRLV 36
                568889**************986 PP

  == domain 2  score: 19.7 bits;  conditional E-value: 1.8e-07
                HHHHHTTTSSSEEEHHHHHHHH CS
   EF-hand_1  5 iFrefDkDgdGkIdfeEfkell 26
                +F+  D Dg+G+I+++Ef  +l
  KOO22451.1 51 LFERCDLDGSGTISLDEFFMFL 72
                79****************8776 PP

  == domain 3  score: 8.7 bits;  conditional E-value: 0.00058
                 HHHHHHHHTTTS.SSEEEHHHHHHHH CS
   EF-hand_1   2 lkeiFrefDkDg.dGkIdfeEfkell 26 
                 l+ iFr +D+ g dG++d  Ef+++ 
  KOO22451.1  84 LDAIFRRYDQKGtDGTLDAAEFQHAA 109
                 78999999999989********9986 PP

  == domain 4  score: 15.3 bits;  conditional E-value: 4.6e-06
                 HHHHHHTTTSSSEEEHHHHHHHHH CS
   EF-hand_1   4 eiFrefDkDgdGkIdfeEfkellk 27 
                 ++F+e+D  g+G++d +E++++lk
  KOO22451.1 120 DLFAELDPSGSGTVDGSELLSALK 143
                 68*******************998 PP

  == domain 5  score: -0.9 bits;  conditional E-value: 0.7
                 SSEEEHHHHHHHHHH CS
   EF-hand_1  14 dGkIdfeEfkellkk 28 
                 +G+++  ++ ++l++
  KOO22451.1 213 NGTLSEAQLGRALER 227
                 8********999976 PP

  == domain 6  score: 14.2 bits;  conditional E-value: 1e-05
                 HHHHHHHTTTSSSEEEHHHHHHHHH CS
   EF-hand_1   3 keiFrefDkDgdGkIdfeEfkellk 27 
                 + +F+ +D+Dg+G I   ++ ++++
  KOO22451.1 241 RGLFEQMDTDGSGVIGQRDLYAWMR 265
                 568****************999997 PP

  == domain 7  score: 6.1 bits;  conditional E-value: 0.004
                 SSSEEEHHHHHHHHHH CS
   EF-hand_1  13 gdGkIdfeEfkellkk 28 
                 +dG I++ Ef++ +kk
  KOO22451.1 321 NDGAISRHEFISHVKK 336
                 8**********98887 PP

>> EF-hand_7  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.8   0.3   4.8e-14   1.1e-10       5      66 ..      13      68 ..       9      72 .. 0.94
   2 !    6.1   0.0    0.0066        15      46      69 ..      84     108 ..      77     114 .. 0.71
   3 !   11.7   0.0   0.00012      0.26       5      39 ..     119     147 ..     118     169 .. 0.85
   4 !   19.5   0.0   4.3e-07   0.00097      16      71 .]     213     265 ..     200     265 .. 0.84
   5 ?    2.0   0.0      0.13   2.9e+02      52      68 ..     315     332 ..     308     335 .. 0.72

  Alignments for each domain:
  == domain 1  score: 41.8 bits;  conditional E-value: 4.8e-14
   EF-hand_7  5 keaFkelDtdgdgyldkeellrllrkifqgagegsklsdeelellfkefDtdkdGvisfdEF 66
                 e F + D+d++g+l+++e++rl+        ++ +l+d+e+  lf+  D+d++G+is+dEF
  KOO22451.1 13 AEQFFAADVDNSGSLTMDEFRRLVV------PTTTPLTDDEVTILFERCDLDGSGTISLDEF 68
                578**********************......9****************************** PP

  == domain 2  score: 6.1 bits;  conditional E-value: 0.0066
   EF-hand_7  46 lellfkefDtdk.dGvisfdEFlkl 69 
                 l+++f+  D+ + dG+++  EF+++
  KOO22451.1  84 LDAIFRRYDQKGtDGTLDAAEFQHA 108
                 5667777777776677777777765 PP

  == domain 3  score: 11.7 bits;  conditional E-value: 0.00012
   EF-hand_7   5 keaFkelDtdgdgyldkeellrllrkifqgagegs 39 
                 ++ F elD  g+g +d +ell++l+       +g 
  KOO22451.1 119 HDLFAELDPSGSGTVDGSELLSALK------LRGA 147
                 678****************999988......4444 PP

  == domain 4  score: 19.5 bits;  conditional E-value: 4.3e-07
   EF-hand_7  16 dgyldkeellrllrkifqgagegsklsdee..lellfkefDtdkdGvisfdEFlklyr 71 
                 +g l++++l r+l++i    g   + ++e+  ++ lf+ +Dtd++Gvi   ++++++r
  KOO22451.1 213 NGTLSEAQLGRALERI----GMIAV-RREKalVRGLFEQMDTDGSGVIGQRDLYAWMR 265
                 89*************7....44444.55445799*********************997 PP

  == domain 5  score: 2.0 bits;  conditional E-value: 0.13
   EF-hand_7  52 efDtdk.dGvisfdEFlk 68 
                  +D++  dG is+ EF  
  KOO22451.1 315 AWDSSAnDGAISRHEFIS 332
                 55555527********86 PP

>> EF-hand_5  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.0   1.7e-06    0.0037       7      25 .]      18      36 ..      13      37 .. 0.89
   2 !   15.2   0.2   5.1e-06     0.011       4      21 ..      51      68 ..      49      72 .. 0.92
   3 !    5.4   0.0    0.0062        14       2      22 ..      85     106 ..      84     108 .. 0.83
   4 ?    4.5   0.0     0.012        27       3      22 ..     120     139 ..     119     143 .. 0.87
   5 !   13.4   0.0   1.8e-05     0.039       4      17 ..     243     256 ..     239     264 .. 0.81
   6 !    6.6   0.0    0.0027         6      12      22 ..     321     331 ..     321     338 .. 0.83

  Alignments for each domain:
  == domain 1  score: 16.7 bits;  conditional E-value: 1.7e-06
                HH-SS-SSCE-HHHHHHHH CS
   EF-hand_5  7 aiDlNgDGkIskeELktlv 25
                a+D++++G ++++E+++lv
  KOO22451.1 18 AADVDNSGSLTMDEFRRLV 36
                89***************86 PP

  == domain 2  score: 15.2 bits;  conditional E-value: 5.1e-06
                HHHHH-SS-SSCE-HHHH CS
   EF-hand_5  4 tFqaiDlNgDGkIskeEL 21
                +F++ Dl+g+G+Is +E+
  KOO22451.1 51 LFERCDLDGSGTISLDEF 68
                58999************9 PP

  == domain 3  score: 5.4 bits;  conditional E-value: 0.0062
                 HHHHHHH-SS-.SSCE-HHHHH CS
   EF-hand_5   2 kdtFqaiDlNg.DGkIskeELk 22 
                 ++ F++ D  g DG++++ E++
  KOO22451.1  85 DAIFRRYDQKGtDGTLDAAEFQ 106
                 667888888888*********8 PP

  == domain 4  score: 4.5 bits;  conditional E-value: 0.012
                 HHHHHH-SS-SSCE-HHHHH CS
   EF-hand_5   3 dtFqaiDlNgDGkIskeELk 22 
                 d+F ++D  g+G+++ +EL 
  KOO22451.1 120 DLFAELDPSGSGTVDGSELL 139
                 789999999*********95 PP

  == domain 5  score: 13.4 bits;  conditional E-value: 1.8e-05
                 HHHHH-SS-SSCE- CS
   EF-hand_5   4 tFqaiDlNgDGkIs 17 
                 +F+++D++g+G I 
  KOO22451.1 243 LFEQMDTDGSGVIG 256
                 7***********95 PP

  == domain 6  score: 6.6 bits;  conditional E-value: 0.0027
                 -SSCE-HHHHH CS
   EF-hand_5  12 gDGkIskeELk 22 
                 +DG Is+ E+ 
  KOO22451.1 321 NDGAISRHEFI 331
                 6********94 PP

>> EF-hand_8  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.6   0.4   1.3e-12     3e-09       2      50 ..      24      70 ..      23      73 .. 0.86
   2 ?    0.9   0.0      0.19   4.2e+02      29      48 ..      85     105 ..      84     112 .. 0.63
   3 !    7.1   0.0    0.0021       4.7       2      53 ..      97     143 ..      96     145 .. 0.77
   4 !   13.6   0.0   2.1e-05     0.046       3      50 ..     214     262 ..     212     265 .. 0.72
   5 ?   -2.6   0.0       2.3   5.2e+03       6      18 ..     290     299 ..     290     306 .. 0.76
   6 !    5.7   0.0    0.0058        13       2      30 ..     322     350 ..     320     354 .. 0.70

  Alignments for each domain:
  == domain 1  score: 36.6 bits;  conditional E-value: 1.3e-12
   EF-hand_8  2 kgkItreelrrilrilglkk..glseeevdilfrefDtdgdGkisfeEFcv 50
                +g++t++e+rr +     +    l+++ev+ilf + D+dg+G+is++EF+ 
  KOO22451.1 24 SGSLTMDEFRRLV----VPTttPLTDDEVTILFERCDLDGSGTISLDEFFM 70
                699********44....444567**************************85 PP

  == domain 2  score: 0.9 bits;  conditional E-value: 0.19
   EF-hand_8  29 dilfrefDtdg.dGkisfeEF 48 
                 d++fr+ D++g dG+++  EF
  KOO22451.1  85 DAIFRRYDQKGtDGTLDAAEF 105
                 566777777666677776666 PP

  == domain 3  score: 7.1 bits;  conditional E-value: 0.0021
   EF-hand_8   2 kgkItreelrrilrilglkkglseee.vdilfrefDtdgdGkisfeEFcvlle 53 
                 +g ++ +e+++++  lg    ++  +  ++lf e+D  g+G+++  E +  l+
  KOO22451.1  97 DGTLDAAEFQHAAEDLG----FG--AiSHDLFAELDPSGSGTVDGSELLSALK 143
                 68888999999775554....33..33789*************9999888776 PP

  == domain 4  score: 13.6 bits;  conditional E-value: 2.1e-05
   EF-hand_8   3 gkItreelrril.rilglkkglseee..vdilfrefDtdgdGkisfeEFcv 50 
                 g ++ + l r+l ri +++  +  e+  v+ lf  +Dtdg+G+i++ + ++
  KOO22451.1 214 GTLSEAQLGRALeRIGMIA--VRREKalVRGLFEQMDTDGSGVIGQRDLYA 262
                 6667777777776664444..4444435899**************998876 PP

  == domain 5  score: -2.6 bits;  conditional E-value: 2.3
   EF-hand_8   6 treelrrilrilg 18 
                 t+e+lr++l   +
  KOO22451.1 290 TPETLRKAL---Q 299
                 8999**988...3 PP

  == domain 6  score: 5.7 bits;  conditional E-value: 0.0058
   EF-hand_8   2 kgkItreelrrilrilglkk.....glseeevdi 30 
                 +g I+r+e+ + +     kk      l+eee+++
  KOO22451.1 322 DGAISRHEFISHV-----KKvvddeALWEEELRD 350
                 6889999999944.....4444456788888876 PP

>> SPARC_Ca_bdg  Secreted protein acidic and rich in cysteine Ca binding region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.7   0.0   0.00022      0.49      59     111 ..      15      69 ..       3      70 .. 0.81
   2 ?    2.4   0.0     0.082   1.8e+02      60     106 ..      88     134 ..      82     141 .. 0.72
   3 ?   -0.8   0.0      0.83   1.9e+03      48      77 ..     232     261 ..     194     266 .. 0.67
   4 ?   -1.9   0.0       1.8   4.1e+03      63      78 ..     316     332 ..     311     351 .. 0.67

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00022
  SPARC_Ca_bdg  59 kFsklDtnsdkvlsksELaplraplvk..lehCikpflescDadkdkkislkEwc 111
                   +F   D+++ ++l+  E + l  p  +  ++  ++ ++e+cD+d  ++isl E+ 
    KOO22451.1  15 QFFAADVDNSGSLTMDEFRRLVVPTTTplTDDEVTILFERCDLDGSGTISLDEFF 69 
                   78889999999******9999877543225777899*****************96 PP

  == domain 2  score: 2.4 bits;  conditional E-value: 0.082
  SPARC_Ca_bdg  60 FsklDtn.sdkvlsksELaplraplvklehCikpflescDadkdkkis 106
                   F + D++ +d++l+ +E ++  ++l  +   ++ ++ + D    ++++
    KOO22451.1  88 FRRYDQKgTDGTLDAAEFQHAAEDL-GFGAISHDLFAELDPSGSGTVD 134
                   8999***9*********99888765.3445555566666665555555 PP

  == domain 3  score: -0.8 bits;  conditional E-value: 0.83
  SPARC_Ca_bdg  48 nlkeckepvawkFsklDtnsdkvlsksELa 77 
                    +++ k  v+  F+++Dt+  +v+ +++L 
    KOO22451.1 232 AVRREKALVRGLFEQMDTDGSGVIGQRDLY 261
                   455556667777889999888888888775 PP

  == domain 4  score: -1.9 bits;  conditional E-value: 1.8
  SPARC_Ca_bdg  63 lDtn.sdkvlsksELap 78 
                   +D   +d+ +s++E  +
    KOO22451.1 316 WDSSaNDGAISRHEFIS 332
                   56555666666666543 PP

>> EF-hand_10  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   0.0      0.54   1.2e+03      24      44 ..      14      33 ..       9      37 .. 0.77
   2 ?    4.4   0.3     0.015        34      24      46 ..      49      71 ..      27      73 .. 0.80
   3 ?    2.6   0.0     0.055   1.2e+02      26      45 ..      87     107 ..      85     112 .. 0.81
   4 !    6.2   0.0    0.0043       9.6      25      43 ..     120     138 ..     118     144 .. 0.89
   5 ?   -2.8   0.0       2.7   6.1e+03      24      37 ..     241     254 ..     236     260 .. 0.82

  Alignments for each domain:
  == domain 1  score: -0.6 bits;  conditional E-value: 0.54
  EF-hand_10 24 ekLFkkcDkSksgrLegeEie 44
                e+ F  +D  +sg+L   E+ 
  KOO22451.1 14 EQ-FFAADVDNSGSLTMDEFR 33
                34.557899999999999885 PP

  == domain 2  score: 4.4 bits;  conditional E-value: 0.015
  EF-hand_10 24 ekLFkkcDkSksgrLegeEieeF 46
                  LF +cD   sg++   E+  F
  KOO22451.1 49 TILFERCDLDGSGTISLDEFFMF 71
                679***********999998877 PP

  == domain 3  score: 2.6 bits;  conditional E-value: 0.055
  EF-hand_10  26 LFkkcDk.SksgrLegeEiee 45 
                 +F++ D+   +g+L+  E+++
  KOO22451.1  87 IFRRYDQkGTDGTLDAAEFQH 107
                 899999625789******998 PP

  == domain 4  score: 6.2 bits;  conditional E-value: 0.0043
  EF-hand_10  25 kLFkkcDkSksgrLegeEi 43 
                  LF + D S sg+ +g+E+
  KOO22451.1 120 DLFAELDPSGSGTVDGSEL 138
                 69****************7 PP

  == domain 5  score: -2.8 bits;  conditional E-value: 2.7
  EF-hand_10  24 ekLFkkcDkSksgr 37 
                 + LF + D+  sg 
  KOO22451.1 241 RGLFEQMDTDGSGV 254
                 67999999988886 PP

>> EF-hand_9  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.0       2.7     6e+03       4      21 ..      16      33 ..      14      47 .. 0.63
   2 !   10.8   0.0   0.00021      0.47       3      60 ..      51     107 ..      49     111 .. 0.93
   3 ?    1.5   0.0      0.17   3.8e+02      39      55 ..     120     135 ..     119     148 .. 0.72
   4 ?   -2.2   0.0       2.4   5.5e+03       3      25 ..     243     265 ..     242     271 .. 0.79

  Alignments for each domain:
  == domain 1  score: -2.3 bits;  conditional E-value: 2.7
   EF-hand_9  4 FevcDtqktGrVpvsrli 21
                F + D++  G  ++ +  
  KOO22451.1 16 FFAADVDNSGSLTMDEFR 33
                556677777776665544 PP

  == domain 2  score: 10.8 bits;  conditional E-value: 0.00021
   EF-hand_9   3 vFevcDtqktGrVpvsrlidyLravtaqdpeeseLeelakelDPdgedasvdldtflr 60 
                 +Fe cD +  G++ + +   +L    + + + + L+   + +D +g d+++d   f++
  KOO22451.1  51 LFERCDLDGSGTISLDEFFMFLLGYVQ-SQTGVGLDAIFRRYDQKGTDGTLDAAEFQH 107
                 69*****************99999988.88899********************99998 PP

  == domain 3  score: 1.5 bits;  conditional E-value: 0.17
   EF-hand_9  39 elakelDPdgedasvdl 55 
                 +l +elDP g  ++vd 
  KOO22451.1 120 DLFAELDPSGS-GTVDG 135
                 57788888888.77764 PP

  == domain 4  score: -2.2 bits;  conditional E-value: 2.4
   EF-hand_9   3 vFevcDtqktGrVpvsrlidyLr 25 
                 +Fe  Dt+  G++   +l + +r
  KOO22451.1 243 LFEQMDTDGSGVIGQRDLYAWMR 265
                 58999999999998777776665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (406 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       372  (0.0207485); expected 358.6 (0.02)
Passed bias filter:                      332  (0.0185175); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.48u 0.26s 00:00:00.74 Elapsed: 00:00:00.41
# Mc/sec: 2977.68
//
Query:       KOO22452.1  [L=247]
Description: hypothetical protein Ctob_002475 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.13   12.2   3.5        3.1    7.8   0.5    2.2  2  FlxA      FlxA-like protein
       0.18   12.2   0.2         29    5.2   0.0    2.4  2  DUF3761   Protein of unknown function (DUF3761)
        2.2    7.9   5.8        3.1    7.4   1.0    2.1  2  DUF1666   Protein of unknown function (DUF1666)


Domain annotation for each model (and alignments):
>> FlxA  FlxA-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.8   0.5   0.00053       3.1      30      62 ..     104     135 ..      91     158 .. 0.79
   2 ?    5.2   0.1    0.0034        20      29      63 ..     199     235 ..     171     241 .. 0.66

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 0.00053
        FlxA  30 qkqLkelsesdeltkeekkkqqqliqaQIqqlq 62 
                 +++L++l +++ + ++   k q+ ++aQI++l+
  KOO22452.1 104 TDKLDSLPDDSPQRQT-VAKAQKALEAQIKKLK 135
                 6788889888444333.6688899999999986 PP

  == domain 2  score: 5.2 bits;  conditional E-value: 0.0034
        FlxA  29 lqkqLkelsesdeltkeekk...kqqqliqaQIqqlqa 63 
                 +  +L++l +    ++e+k+     ++ i+aQI +l+a
  KOO22452.1 199 IRYELDKLEAM-PNDPEQKNivaDAEKAIEAQIVKLNA 235
                 44566666666.66667776777888899999988887 PP

>> DUF3761  Protein of unknown function (DUF3761)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.9   0.0    0.0061        36      25      64 ..      50      87 ..      18      90 .. 0.61
   2 ?    5.2   0.0    0.0048        29      47      65 ..     169     187 ..     118     189 .. 0.71

  Alignments for each domain:
  == domain 1  score: 4.9 bits;  conditional E-value: 0.0061
     DUF3761 25 pdesdLtehdsyvnrDGeevhaPahaksGkvpegatarCr 64
                + ++d+ e+ +    +  +v   ++ak Gk  +g++a C 
  KOO22452.1 50 ASDADVYERADEGKLNAARV--VERAKAGKLVDGSSATCD 87
                34444444444333333333..478999***********6 PP

  == domain 2  score: 5.2 bits;  conditional E-value: 0.0048
     DUF3761  47 PahaksGkvpegatarCrD 65 
                  ++ak+Gk  +g++a C++
  KOO22452.1 169 IERAKTGKLVDGSSATCSE 187
                 4799*************85 PP

>> DUF1666  Protein of unknown function (DUF1666)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.4   1.0   0.00052       3.1     147     186 ..     111     150 ..      49     163 .. 0.79
   2 ?    3.2   0.3      0.01        60     123     180 ..     189     243 ..     156     245 .. 0.82

  Alignments for each domain:
  == domain 1  score: 7.4 bits;  conditional E-value: 0.00052
     DUF1666 147 vedpedlellaelkkslqkkekklkdllrkkkclvkklkk 186
                  +d+ + + +a+ +k+l+ + kklkdl ++k+c   k+k+
  KOO22452.1 111 PDDSPQRQTVAKAQKALEAQIKKLKDLEKTKSCPGLKQKS 150
                 47888999999*********************97655544 PP

  == domain 2  score: 3.2 bits;  conditional E-value: 0.01
     DUF1666 123 weFlkaDkkkssqilkallkrkvevedpedlellaelkkslqkkekklkdllrkkkcl 180
                  + +++Dk++    l +l +     +dpe+++++a+ +k+++ +  kl+  +r+k+c+
  KOO22452.1 189 EKIIRVDKEAIRYELDKLEAMP---NDPEQKNIVADAEKAIEAQIVKLNAKRREKNCF 243
                 5678889888877777666555...8******************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (247 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1004  (0.0559987); expected 358.6 (0.02)
Passed bias filter:                      524  (0.0292264); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.44u 0.25s 00:00:00.69 Elapsed: 00:00:00.39
# Mc/sec: 1889.80
//
Query:       KOO22453.1  [L=332]
Description: hypothetical protein Ctob_002477 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (332 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       321  (0.017904); expected 358.6 (0.02)
Passed bias filter:                      283  (0.0157845); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.43u 0.23s 00:00:00.66 Elapsed: 00:00:00.38
# Mc/sec: 2627.54
//
Query:       KOO22454.1  [L=347]
Description: NAD-dependent epimerase dehydratase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    4.5e-16   59.0   0.0    6.3e-16   58.6   0.0    1.2  1  Epimerase      NAD dependent epimerase/dehydratase family
    1.9e-13   50.5   0.0    3.7e-13   49.6   0.0    1.5  1  GDP_Man_Dehyd  GDP-mannose 4,6 dehydratase
    8.7e-08   31.6   0.0    4.1e-07   29.4   0.0    2.0  1  NAD_binding_4  Male sterility protein
    1.4e-06   27.5   0.0    3.7e-06   26.2   0.0    1.6  1  3Beta_HSD      3-beta hydroxysteroid dehydrogenase/isomerase 
    0.00085   18.5   0.0     0.0018   17.4   0.0    1.5  1  RmlD_sub_bind  RmlD substrate binding domain
     0.0084   16.0   0.6       0.23   11.3   0.6    2.3  2  KR             KR domain


Domain annotation for each model (and alignments):
>> Epimerase  NAD dependent epimerase/dehydratase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.6   0.0   2.1e-19   6.3e-16       2     199 ..       4     219 ..       3     252 .. 0.85

  Alignments for each domain:
  == domain 1  score: 58.6 bits;  conditional E-value: 2.1e-19
                 EEETTTSHHHHHHHHHHHHCTSEEEEEES-STTTTCHHCHHC.....................EEEE--TT-HHHHHHHHHHHT-SEEEE--S.---HH CS
   Epimerase   2 lVtGatGfiGsalvkallekgyevigldrlssasntarledl.....................elveldltdrsalerlfkeeqpdavihlAa.vggva 78 
                 l+tG+ Gf+G +++ all++g+ +  l +++ + ++  l d+                      + ++dl ++   ++l+++ +   ++hlA  v+g  
  KOO22454.1   4 LITGGLGFLGLQTASALLRRGVVWSPLFKQPVSIKKITLFDIpaaisagaasvpkelredprvAIKTGDLGEEGIAAELIDDDDLS-IVHLASmVSGDT 101
                 9*****************************999999999999***************************************96665.677866677655 PP

                 HHHHSHHHHHHHHTHHHHHHHHHHHHHTCT.EEEEEEEGGGGTSCSSSSBSTCSTTS----SSHHHHHHHHHHHHHHHHHHHHT-EEEEEEESEEESTT CS
   Epimerase  79 assedpadfieknlqgtlnlleaarkagvk.rllflsSsevYGkdaeqpkeettltgplkpnspYaaaKlageklveayaaqyglnaiilrlfnlyGpr 176
                     dp + ++ n++g++ llea++++ +  r+lf sS+++ G+++e       ++++l p + Y+ +K+  e ++ +ya+ + ++a  lrl  ++   
  KOO22454.1 102 --EADPDRGWRVNVEGQRALLEAVKASAPGaRFLFTSSTATLGPVPEG--RIADDSTKLLPGNTYGFHKAVCELMINDYARRGWVDARGLRLPVIVVRP 196
                 ..59*********************996655****************3..3333345899************************999999988765444 PP

                 .S-TTSTTSHHHHHHHHHHTTSSS CS
   Epimerase 177 .ngegevsrvipalirkilegkqe 199
                   ++   ++ ++ ++r  l+g  +
  KOO22454.1 197 gAPNAALTGAWSTVVRDPLKGL-D 219
                 3555666666666666666665.5 PP

>> GDP_Man_Dehyd  GDP-mannose 4,6 dehydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.6   0.0   1.2e-16   3.7e-13       1     169 [.       4     178 ..       4     189 .. 0.81

  Alignments for each domain:
  == domain 1  score: 49.6 bits;  conditional E-value: 1.2e-16
                    EEETTTSHHHHHHHHHHHHCT-CCEEEEEEESS-TTHHHH........HCTTT....TTGCCEEEEE--TT-HHHHHHHHHHHT-SEEEE--S--- CS
  GDP_Man_Dehyd   1 LiTGiaGfiGsylaelLlekgyevhgivrrsssfntgrie........hlakd.pkeeleenlklhkgDltDssslerllaevqpdevynLAAqsh 87 
                    LiTG+ Gf G  +a  Ll++g     + ++  s +  ++           a+  ++ + ++++ +  gDl ++    +l+++ +   +++LA +  
     KOO22454.1   4 LITGGLGFLGLQTASALLRRGVVWSPLFKQPVSIKKITLFdipaaisaGAASVpKELREDPRVAIKTGDLGEEGIAAELIDDDDLS-IVHLASMVS 98 
                    9********************98877766554443222211222222222222123445679********************9976.*****9999 PP

                    HHHHTTSHHHHHHHHTHHHHHHHHHHHHCT..TTSEEEEEEEGGGG-S-SSSSB.-TTS-----SHHHHHHHHHHHHHHHHHH CS
  GDP_Man_Dehyd  88 VdvsfekPeytaevnvlGtlrLLeairalglekkvrfyqaStsEvYGkvqevpq.tEttpfyPrsPYaaaKlyadwivvnyre 169
                     d+  + P++ ++vnv G   LLea++a    + +rf+++S+    G v e  + +++t++ P + Y+  K++++ ++ +y +
     KOO22454.1  99 GDTEAD-PDRGWRVNVEGQRALLEAVKASA--PGARFLFTSSTATLGPVPEGRIaDDSTKLLPGNTYGFHKAVCELMINDYAR 178
                    888766.9*******************974..79****************98863899***********************87 PP

>> NAD_binding_4  Male sterility protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.4   0.0   1.4e-10   4.1e-07       1     210 [.       5     196 ..       5     217 .. 0.73

  Alignments for each domain:
  == domain 1  score: 29.4 bits;  conditional E-value: 1.4e-10
                    EE-TTSHHHHHHHHHHHHHS-.T....EEEEEE-SSSHHHHHHHHHHHT-SS-HHHHHHHHHTTTEEEEE--TTSGGGG--HHHHHHHHHH--EEE CS
  NAD_binding_4   1 lTGaTGFLGkvLlekLLrttpev....kiyllvRaksgesaeeRleeelekkelfsallkelaerikvveGDlseprlGLseedlqelaeevdvii 92 
                    +TG+ GFLG      LLr+        k  + +++ +  ++ + +  +    +++++l  +   r+ + +GDl e+ +  +  d ++l      i+
     KOO22454.1   5 ITGGLGFLGLQTASALLRRGVVWsplfKQPVSIKKITLFDIPAAI--SAGAASVPKEL--REDPRVAIKTGDLGEEGIAAELIDDDDL-----SIV 91 
                    899999999999999999975323112333455555555555555..44455555555..5899**********99654333333333.....79* PP

                    E--SS-S.ST..TSSEEHHHHHHHHHHHHHHHTSSS--.-EEEEEE.GGGTTS-TTT--SSS-H......HHH--EEEETTTCCCHHHHHHHHHHH CS
  NAD_binding_4  93 hsaAtvnfde..pykellrvNveGtrevlelakklkklkvllhvST.ayvngeregeveekvyeegekeekldederaklkglpntYeqsKalaEk 185
                    h a  v+ d   + ++ +rvNveG r +le  k+ +    +l+ S+ a++ +  eg++               +d+   +    ntY + Ka+ E 
     KOO22454.1  92 HLASMVSGDTeaDPDRGWRVNVEGQRALLEAVKASAPGARFLFTSStATLGPVPEGRI--------------ADDST--KLLPGNTYGFHKAVCEL 171
                    ******98772256679****************9998889999988799999999886..............33333..344569*********** PP

                    HHHHHHHHH---EEEEEE-EEE--S CS
  NAD_binding_4 186 lvrearrrsglpvvivRpsiitges 210
                    ++++++rr+ + +  +R+++i+ ++
     KOO22454.1 172 MINDYARRGWVDARGLRLPVIVVRP 196
                    ******9987777777777777633 PP

>> 3Beta_HSD  3-beta hydroxysteroid dehydrogenase/isomerase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.2   0.0   1.2e-09   3.7e-06       1     157 [.       4     173 ..       4     197 .. 0.71

  Alignments for each domain:
  == domain 1  score: 26.2 bits;  conditional E-value: 1.2e-09
   3Beta_HSD   1 vvtGgaGFlGralvkeLvrle...........elkevrvlD......lrespelleelskvnvkkviegDvtdkdkleealegvdv.vihlaslvdvag 81 
                 ++tGg GFlG +  ++L+r++           ++k++  +D          +  +e  +  +v+ + +gD+ ++    e +++ d+ ++hlas+v    
  KOO22454.1   4 LITGGLGFLGLQTASALLRRGvvwsplfkqpvSIKKITLFDipaaisAGAASVPKELREDPRVA-IKTGDLGEEGIAAELIDDDDLsIVHLASMVSGDT 101
                 69***************99873333222222224678888866553211122222333333333.889**************99974789*99999999 PP

   3Beta_HSD  82 kltedeimkvnvkGTrnvleacvkag.vrvlvYtSsaevvgpnslgeeilngdEeleyeslhqdaypesKalaEklv 157
                 +   d+  +vnv+G r +lea + +    ++++tSs    gp + +  i   d+++  + l+ ++y   Ka+ E ++
  KOO22454.1 102 EADPDRGWRVNVEGQRALLEAVKASApGARFLFTSSTATLGP-VPEGRIA--DDST--KLLPGNTYGFHKAVCELMI 173
                 ********************987654146899*********9.3333333..4433..3456666766777666665 PP

>> RmlD_sub_bind  RmlD substrate binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.4   0.0   6.1e-07    0.0018       1     143 [.       1     180 [.       1     185 [. 0.87

  Alignments for each domain:
  == domain 1  score: 17.4 bits;  conditional E-value: 6.1e-07
                    EEEEEESTTSHHHHHHHHHCTTTSEEEEEE-TT....................................T--TTSHHHHHHHHHHH--SEEEE--- CS
  RmlD_sub_bind   1 mkilvtGanGqlGseLakqlaeeglevlaltre....................................eldltdaeavaellkeakpdvvvnaAA 60 
                    m +l+tG+ G lG + a +l ++g+   +l ++                                    + dl ++  +ael+++ +   +v++A 
     KOO22454.1   1 MSLLITGGLGFLGLQTASALLRRGVVWSPLFKQpvsikkitlfdipaaisagaasvpkelredprvaikTGDLGEEGIAAELIDDDDL-SIVHLAS 95 
                    789*********************9999999999*********************************9999**9999999***99666.899**** PP

                    ---HHHHHHSHHHHHHHHTHHHHHHHHH..HHHCT-EEEEEEEGGGS-S-TTS-.B-TTS----SSHHHHHHHHHHHHHHHH-SSE CS
  RmlD_sub_bind  61 ytavDkaEseeeaayavnaeavealAea..aaavgalLihvStDyVFdGekkrp.YeeddetsPlnvYGrtKlaGEqavlaagkka 143
                        D  E ++++  +vn+e+ +al ea  a+a ga +++ S+        +      + +  P n+YG  K+  E +++++  + 
     KOO22454.1  96 MVSGD-TEADPDRGWRVNVEGQRALLEAvkASAPGARFLFTSSTATLGPVPEGRiADDSTKLLPGNTYGFHKAVCELMINDYARRG 180
                    99988.6******************665227788**999998887776665554144555678*************9999877665 PP

>> KR  KR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.3   0.6   7.8e-05      0.23       3      24 ..       3      24 ..       2      27 .. 0.92
   2 ?    1.9   0.0     0.063   1.9e+02      97     141 ..      97     141 ..      88     147 .. 0.75

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 7.8e-05
                EEEETTTSHHHHHHHHHHHHHH CS
          KR  3 ylitGGlGgLGlelarwlaekg 24
                 litGGlG LGl++a  l+++g
  KOO22454.1  3 LLITGGLGFLGLQTASALLRRG 24
                59*****************999 PP

  == domain 2  score: 1.9 bits;  conditional E-value: 0.063
                 TTT--HHHHHHHHTTTTHHHHHHHHHTTT.S--SEEEEEEEHHHHH CS
          KR  97 leemtaedleqvlapKvkGawnLhelled.esldffvlfSSiagll 141
                 ++  t++d ++  +  v+G + L e+++   +   f+++SS a+ l
  KOO22454.1  97 VSGDTEADPDRGWRVNVEGQRALLEAVKAsAPGARFLFTSSTAT-L 141
                 5566778888888999***********99556666777777665.3 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (347 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       243  (0.0135535); expected 358.6 (0.02)
Passed bias filter:                      207  (0.0115455); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.45u 0.27s 00:00:00.72 Elapsed: 00:00:00.39
# Mc/sec: 2651.82
//
Query:       KOO22455.1  [L=130]
Description: hypothetical protein Ctob_005383 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (130 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       357  (0.0199119); expected 358.6 (0.02)
Passed bias filter:                      209  (0.0116571); expected 358.6 (0.02)
Passed Vit filter:                         8  (0.000446204); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.22s 00:00:00.57 Elapsed: 00:00:00.37
# Mc/sec: 1043.18
//
Query:       KOO22456.1  [L=1362]
Description: phosphatidylinositol-4,5-diphosphate 3-kinase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.4e-58  197.4   0.1    2.7e-58  196.4   0.1    1.4  1  PI3Ka           Phosphoinositide 3-kinase family, accessory d
    1.3e-48  166.1   0.0    2.3e-47  161.9   0.0    2.3  1  PI3_PI4_kinase  Phosphatidylinositol 3- and 4-kinase
    7.4e-14   51.6   0.1    1.5e-06   28.1   0.0    2.6  2  cNMP_binding    Cyclic nucleotide-binding domain
  ------ inclusion threshold ------
      0.014   14.7   0.0      0.025   13.9   0.0    1.3  1  DUF4135         Domain of unknown function (DUF4135)
       0.17   11.9   0.7        0.4   10.7   0.7    1.6  1  VGPC1_C         C-terminal membrane-localisation domain of io


Domain annotation for each model (and alignments):
>> PI3Ka  Phosphoinositide 3-kinase family, accessory domain (PIK domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  196.4   0.1   7.5e-62   2.7e-58      10     182 ..     841    1014 ..     837    1016 .. 0.97

  Alignments for each domain:
  == domain 1  score: 196.4 bits;  conditional E-value: 7.5e-62
                  HHHHHHHCHS-TTS---HHHHHHHHHTHHHHCTSGGGHHHHHTTS-SSSHHHHHHHHHHHTTSHHTTHHHHTTTTSTTS--HHHHHHHHHHHHHSHH CS
       PI3Ka   10 rdeleaiiakdPltkltaeekeliwkfryylknnkkaltklLqsvkwseesevkealelldsWaeididdaLeLLdskfkdesvreyavkvLekasd 106 
                  + +l+ +i++dPl++lt+++k+++w++r+++ + + al+k+Lqsv w +  +v+e+  ll +Wa+++++ aLeLLd+kf+d  +reyav +Le++sd
  KOO22456.1  841 STRLKVLIEQDPLADLTQDDKQILWTHRHFILSSPIALPKFLQSVSWADHRQVAEMHALLGRWAPLKPVAALELLDAKFADARIREYAVGCLEDFSD 937 
                  568999***********************999***************************************************************** PP

                  HHHHHHHHHHHHHHGGSSSSSSHHHHHHHHHHHHSH.HHHHHHHHHHHHHHHCCTHHHHHHHHHHHHHHHCHHHHHH CS
       PI3Ka  107 eelllYllQLVqalkyepikdsalaefLlkralknk.rlghfffWyLkseiedkevserfksllesylrklskslke 182 
                   +l+lY+lQLVq+lkye  +dsala+fLl+ral+++ ++gh+ffW Lk+ ++  ev+erf+ ll++ylr ++++++e
  KOO22456.1  938 TDLELYVLQLVQVLKYEARHDSALARFLLRRALSSPhQVGHQFFWCLKAGMHAPEVCERFGLLLQEYLRCCGEHRSE 1014
                  ***********************************999*********************************999876 PP

>> PI3_PI4_kinase  Phosphatidylinositol 3- and 4-kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  161.9   0.0   6.4e-51   2.3e-47       4     249 ..    1101    1312 ..    1098    1313 .. 0.95

  Alignments for each domain:
  == domain 1  score: 161.9 bits;  conditional E-value: 6.4e-51
                      EEEECSSCHHHHHHHHHHHHHHHHHHHHTTTTCCCT-------EEESSSSEEEEE--TTEEEHHHHHHHHHHHCTTSTCHHHHHHHHHCHCHC CS
  PI3_PI4_kinase    4 giykvgddlrqdelivqvfklmdeelskennpkrrklalktysviplgrkcgiielvassetaaslldeklekkgvpptasveslrvaldkkk 96  
                      +i+k+gddlrqd+l++q++++m+  +++ +++++    l  y+++++g + g+ie+v +s+t a + + +  +      a             
      KOO22456.1 1101 VIFKCGDDLRQDQLTLQILRIMERRWERAGLDLQ----LSAYRCVATGNELGFIEVVLNSTTTADITKTYSGG------A------------- 1170
                      79*******************************8....*******************************9844......2............. PP

                      CHHHHHCCHHHHHHTSSTTHHHHHHHHHSSSHHHHHHHHHHHHHHHHHHHHHHHHHT-TT--TTTEEEETTTSEEEESSTTTCCTCSHCSSSS CS
  PI3_PI4_kinase   97 lkkekklkfekrtalkpksgllqeFvkkspsaeewlearkqFvrslaklsvldyilgngDRhldNilvdktsgklihIDfGlilpdewkllpf 189 
                                  +    k+ +  ++ +++p+++++ +a ++F  sla ++v++y++g+gDRh+dNi++  ++g+l+hIDfG++l++ + ++++
      KOO22456.1 1171 ------------SGAFSKEPMAMYLREHNPTPDAYRRAVDTFLVSLAAYCVATYVMGIGDRHNDNIML-ARTGHLFHIDFGHFLGNFKSKFGI 1250
                      ............23346699************************************************.************************ PP

                      -.SSSSSS-THHHHHHT..STTCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHCCSSC CS
  PI3_PI4_kinase  190 pqekvPfrltrelvlai..dpskdeglfresceealealrrdqnlltrllkkavkdglilwe 249 
                       +e+ Pf  t+++ +++  +   d+  f ++c +a++++r ++n +++l+++++++g+++++
      KOO22456.1 1251 RRERAPFVFTPDFAYVLgeKGADDYARFSDLCGRAYNVIRAHANEFINLFQLMLSTGIPELQ 1312
                      *****************7667789**********************************9976 PP

>> cNMP_binding  Cyclic nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.1   0.0   4.3e-10   1.5e-06       3      88 ..      42     123 ..      40     124 .. 0.88
   2 !   20.9   0.0   7.7e-08   0.00027       7      85 ..     400     484 ..     394     487 .. 0.90

  Alignments for each domain:
  == domain 1  score: 28.1 bits;  conditional E-value: 4.3e-10
                   EE-TT-EEE-TTSB-SEEEEEEES-EEEEEEETTS.EEEEEEE-TTEEESHHHHHHTS--SSEEEESSTEEEEEEEHHHHHHHHHH CS
  cNMP_binding   3 sfkagevifrqGdpadslyivlsGevrvyrlsedgkevvlavlgpGdlfGelalltgeprtatvvAltdsellalprddflellqq 88 
                   +fk ge+++ qG+pa+ + ++l+G +  +   +d    v a  g Gd++G  +l+ g++r  +vvA +d  l+++p  ++++l ++
    KOO22456.1  42 YFKEGETVLLQGEPATFFGVLLKGVLTPM--IGDV--PVGALRGIGDIIGGTSLFSGGTRNVSVVASEDGYLAVVPFTQLERLKKS 123
                   79***********************9994..3333..455577************************************9999765 PP

  == domain 2  score: 20.9 bits;  conditional E-value: 7.7e-08
                   T-EEE-TTSB-SEEEEEEES-EEEE.....EEETTS.E.EEEEEE-TTEEESHHHHHHTS--SSEEEESSTEEEEEEEHHHHHHH CS
  cNMP_binding   7 gevifrqGdpadslyivlsGevrvy.....rlsedgke.vvlavlgpGdlfGelalltgeprtatvvAltdsellalprddflel 85 
                   g+ ++++G++a  + ++l+G+++v      +++ dg +  v+++l+pG  +G   l++g+ r a+v   t++ + +++ +++ +l
    KOO22456.1 400 GSPLLKAGEEASFVALLLEGSLEVHhrpvsARAHDGTQaPVTRTLRPGTALGYGPLFQGGGREADVLGATPAYVGVISYAELSSL 484
                   7889********************9999999999998856888*****************************9999999988765 PP

>> DUF4135  Domain of unknown function (DUF4135)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.0   6.9e-06     0.025     100     175 ..    1131    1241 ..    1100    1260 .. 0.72

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 6.9e-06
     DUF4135  100 gsldlkvlkvldr.geYgWvefvehq.................................pcaseeeverfYrraGallallyllggtDlheeNl.ia 161 
                    l+l  ++++   +e g+ e+v +                                  p a +++v+ f   + a++ ++y++g+ D h++N+ +a
  KOO22456.1 1131 LDLQLSAYRCVATgNELGFIEVVLNStttaditktysggasgafskepmamylrehnptPDAYRRAVDTFLVSLAAYCVATYVMGIGDRHNDNImLA 1227
                  5555555555543356666666665556666666666666666666666666666666677889999***************************999 PP

     DUF4135  162 sgeqpvliDlEtll 175 
                    ++++ iD+  +l
  KOO22456.1 1228 RTGHLFHIDFGHFL 1241
                  99*******98777 PP

>> VGPC1_C  C-terminal membrane-localisation domain of ion-channel, VCN1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.7   0.00011       0.4       2      42 ..     116     162 ..     115     170 .. 0.91

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00011
     VGPC1_C   2 qlskLkqaNlqLaaKvq.qLefscsEKeqeie.....rLnkLlkqhG 42 
                 ql +Lk  N  La+K   qL     EK  e++     r  +  +qhG
  KOO22456.1 116 QLERLKKSNPTLATKLNtQLANAALEKQFESDgidfsRVSEQQRQHG 162
                 99*************9659************9999999999999999 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1362 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       535  (0.0298399); expected 358.6 (0.02)
Passed bias filter:                      431  (0.0240393); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.83u 0.28s 00:00:01.10 Elapsed: 00:00:00.43
# Mc/sec: 9473.55
//
Query:       KOO22457.1  [L=67]
Description: hypothetical protein Ctob_005381 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (67 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       168  (0.00937029); expected 358.6 (0.02)
Passed bias filter:                      140  (0.00780858); expected 358.6 (0.02)
Passed Vit filter:                         7  (0.000390429); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.24s 00:00:00.59 Elapsed: 00:00:00.40
# Mc/sec: 503.17
//
Query:       KOO22458.1  [L=153]
Description: peptidyl-prolyl cis-trans isomerase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    9.2e-05   22.1   4.6       0.13   12.0   0.5    2.3  2  TPR_11    TPR repeat
    0.00011   22.5   2.1        0.3   11.4   0.6    2.2  2  TPR_12    Tetratricopeptide repeat
     0.0014   18.6   9.1      0.016   15.2   2.0    2.3  2  TPR_2     Tetratricopeptide repeat
     0.0025   17.6   8.7     0.0033   17.2   1.4    2.4  2  TPR_1     Tetratricopeptide repeat
  ------ inclusion threshold ------
      0.027   14.9   0.8        2.9    8.5   0.2    2.6  2  TPR_17    Tetratricopeptide repeat
       0.17   12.1   2.8        0.3   11.3   2.0    1.7  1  ANAPC3    Anaphase-promoting complex, cyclosome, subunit 3
        0.7   10.9   4.7       0.88   10.6   1.7    2.5  2  TPR_14    Tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> TPR_11  TPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.0   0.5     5e-05      0.13       1      22 [.      65      86 ..      65      90 .. 0.96
   2 !   11.6   0.3   6.4e-05      0.16      18      32 ..     127     141 ..     121     142 .. 0.94

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 5e-05
      TPR_11  1 GdayyeqGkyeeAieaYkkAlk 22
                G+a ++ G+ eeA ++Y+ Al+
  KOO22458.1 65 GNAKFKAGRVEEACQKYNCALQ 86
                9*****************9997 PP

  == domain 2  score: 11.6 bits;  conditional E-value: 6.4e-05
      TPR_11  18 kkAlkldPdnaeayy 32 
                 +kA++ld dn+ a+y
  KOO22458.1 127 SKAIQLDADNVKAHY 141
                 59************9 PP

>> TPR_12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.8   0.0   0.00019      0.48      10      39 ..      65      94 ..      54     100 .. 0.85
   2 !   11.4   0.6   0.00012       0.3       5      33 ..     105     133 ..     101     148 .. 0.82

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00019
      TPR_12 10 aavlrrlgrydeAlellekaleiarrllGp 39
                +++ +++gr +eA++ ++ al+ + + +G+
  KOO22458.1 65 GNAKFKAGRVEEACQKYNCALQTYANRPGG 94
                8999********************888776 PP

  == domain 2  score: 11.4 bits;  conditional E-value: 0.00012
      TPR_12   5 alnnlaavlrrlgrydeAlellekaleia 33 
                 ++ n+a++l+rl+++  A++   ka+++ 
  KOO22458.1 105 LYANRAECLLRLEQWLAAEQAASKAIQLD 133
                 5669*********************9986 PP

>> TPR_2  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.4   0.7     0.002       5.2       7      28 ..      64      85 ..      60      90 .. 0.86
   2 !   15.2   2.0   6.4e-06     0.016       2      34 .]     104     136 ..     103     136 .. 0.93

  Alignments for each domain:
  == domain 1  score: 7.4 bits;  conditional E-value: 0.002
       TPR_2  7 lGlayyklgdyeeAleafekAl 28
                 G+a +k+g+ eeA + ++ Al
  KOO22458.1 64 EGNAKFKAGRVEEACQKYNCAL 85
                6999************998665 PP

  == domain 2  score: 15.2 bits;  conditional E-value: 6.4e-06
       TPR_2   2 ealynlGlayyklgdyeeAleafekAleldPnn 34 
                 +++ n+++++++l ++  A++a  kA++ld +n
  KOO22458.1 104 KLYANRAECLLRLEQWLAAEQAASKAIQLDADN 136
                 6899*************************9775 PP

>> TPR_1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.5   1.0     0.013        32       8      29 ..      65      86 ..      62      90 .. 0.90
   2 !   17.2   1.4   1.3e-06    0.0033       2      34 .]     104     136 ..     103     136 .. 0.94

  Alignments for each domain:
  == domain 1  score: 4.5 bits;  conditional E-value: 0.013
                HHHHHHTT-HHHHHHHHHHHHH CS
       TPR_1  8 GnayfklgkydeAleyyekALe 29
                Gna fk g+ +eA + y+ AL+
  KOO22458.1 65 GNAKFKAGRVEEACQKYNCALQ 86
                9************999999998 PP

  == domain 2  score: 17.2 bits;  conditional E-value: 1.3e-06
                 HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH CS
       TPR_1   2 kalynlGnayfklgkydeAleyyekALelnPnn 34 
                 k + n++ ++++l+++  A+++ +kA++l+ +n
  KOO22458.1 104 KLYANRAECLLRLEQWLAAEQAASKAIQLDADN 136
                 789**************************9876 PP

>> TPR_17  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.5   0.2    0.0011       2.9      13      34 .]     103     124 ..      97     124 .. 0.91
   2 ?    4.3   0.0     0.024        61       4      17 ..     128     141 ..     125     142 .. 0.90

  Alignments for each domain:
  == domain 1  score: 8.5 bits;  conditional E-value: 0.0011
      TPR_17  13 adaynnLAelllknGdlmtArq 34 
                 +++y n+Ae+ll++ ++  A+q
  KOO22458.1 103 SKLYANRAECLLRLEQWLAAEQ 124
                 789*************999987 PP

  == domain 2  score: 4.3 bits;  conditional E-value: 0.024
      TPR_17   4 kaleldPnnadayn 17 
                 ka++ld +n++a++
  KOO22458.1 128 KAIQLDADNVKAHY 141
                 9***********98 PP

>> ANAPC3  Anaphase-promoting complex, cyclosome, subunit 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   2.0   0.00012       0.3      22      60 ..     101     141 ..      79     142 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00012
                 -HHHHHHH.HHHHHHTT-HHHHHHHHHCT.SHHHC-HHHHH CS
      ANAPC3  22 spedayll.AlclylngqykrAyellrka.klnskslgcry 60 
                   + +y+  A+cl++++q+  A + ++ka +l+  + +++y
  KOO22458.1 101 EKSKLYANrAECLLRLEQWLAAEQAASKAiQLDADNVKAHY 141
                 334455547****************************9998 PP

>> TPR_14  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.2   0.0      0.74   1.9e+03      10      25 ..      67      82 ..      53      93 .. 0.70
   2 ?   10.6   1.7   0.00035      0.88       3      39 ..     105     141 ..     103     142 .. 0.91

  Alignments for each domain:
  == domain 1  score: 0.2 bits;  conditional E-value: 0.74
      TPR_14 10 allalGdpdeAiallr 25
                a + +G+ +eA + ++
  KOO22458.1 67 AKFKAGRVEEACQKYN 82
                5566777777766554 PP

  == domain 2  score: 10.6 bits;  conditional E-value: 0.00035
      TPR_14   3 allalaeallalGdpdeAiallrralalaPddaeawl 39 
                 +++ +ae ll+l+++ +A++++ +a++l+ d+  a++
  KOO22458.1 105 LYANRAECLLRLEQWLAAEQAASKAIQLDADNVKAHY 141
                 67779999************************99986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (153 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       521  (0.0290591); expected 358.6 (0.02)
Passed bias filter:                      376  (0.0209716); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.39u 0.24s 00:00:00.63 Elapsed: 00:00:00.38
# Mc/sec: 1192.84
//
Query:       KOO22459.1  [L=325]
Description: chloroplast chlorophyll synthase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (325 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       416  (0.0232026); expected 358.6 (0.02)
Passed bias filter:                      231  (0.0128842); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.44u 0.23s 00:00:00.67 Elapsed: 00:00:00.40
# Mc/sec: 2415.37
//
Query:       KOO22460.1  [L=110]
Description: hypothetical protein Ctob_005377 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (110 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       324  (0.0180713); expected 358.6 (0.02)
Passed bias filter:                      160  (0.00892409); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.24s 00:00:00.58 Elapsed: 00:00:00.38
# Mc/sec: 864.69
//
Query:       KOO22461.1  [L=131]
Description: exosome complex component rrp43 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      2e-06   27.8   0.0    2.9e-06   27.2   0.0    1.2  1  RNase_PH_C  3' exoribonuclease family, domain 2


Domain annotation for each model (and alignments):
>> RNase_PH_C  3' exoribonuclease family, domain 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.2   0.0   1.6e-10   2.9e-06       6      65 ..      44     103 ..      40     105 .. 0.93

  Alignments for each domain:
  == domain 1  score: 27.2 bits;  conditional E-value: 1.6e-10
                 EEEEEETTEEEES--HHHHHHSSEEEEEEEETTSEEEEEEEECSSCEEHHHHHHHHHHHH CS
  RNase_PH_C   6 vtvgkvddqfvlDptkeEedlsegdltlavagtkevvtlmkeggsqldeetlleaielAk 65 
                 +++g+  ++++lDp +eEe+ls+  +t+ ++  +e  +++k gg++l++  l +++  A 
  KOO22461.1  44 FSFGVLAGTLILDPCAEEEALSSTAVTVLLDCQGELRAVHKPGGAPLPDGGLAACVAAAR 103
                 589*******************************************99999988888775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (131 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       327  (0.0182386); expected 358.6 (0.02)
Passed bias filter:                      256  (0.0142785); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.33u 0.24s 00:00:00.57 Elapsed: 00:00:00.36
# Mc/sec: 1091.54
//
Query:       KOO22462.1  [L=894]
Description: ribonucleoside-diphosphate alpha subunit [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   1.3e-178  594.9   0.0   1.5e-178  594.6   0.0    1.1  1  Ribonuc_red_lgC  Ribonucleotide reductase, barrel domain
    8.9e-22   76.9   0.0    2.3e-21   75.6   0.0    1.8  1  Ribonuc_red_lgN  Ribonucleotide reductase, all-alpha domain
  ------ inclusion threshold ------
      0.044   13.0   0.1        0.1   11.9   0.1    1.5  1  Engrail_1_C_sig  Engrailed homeobox C-terminal signature doma


Domain annotation for each model (and alignments):
>> Ribonuc_red_lgC  Ribonucleotide reductase, barrel domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  594.6   0.0  2.5e-182  1.5e-178       1     524 []     271     821 ..     271     821 .. 0.98

  Alignments for each domain:
  == domain 1  score: 594.6 bits;  conditional E-value: 2.5e-182
                      EEE......BSS-EEEE-X..............XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXXXX CS
                      xxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxx RF
  Ribonuc_red_lgC   1 ssCfvlsv.edslesIletvkeaallskaggGvGlnlsklRakgslvkgtegaasGpvsfmklidavadvvkqgG.kRrGAamvylevwHpDie 92 
                      ssCf+ls+  ds+e+I++t+ ++a++s+ +gG+Gl++s++Ra  s++++ +g +sG+v++++++da+a++v+qgG kR+GA +vyle+wH+D++
       KOO22462.1 271 SSCFLLSTrADSIEGIFDTLGQCARISRDAGGIGLSVSNVRAARSYIRSSGGVSSGLVPMLRVFDATARYVDQGGgKRKGAFAVYLEPWHADVF 364
                      8******999****************************************************************99****************** PP

                      XXXXXXXXXXX..XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.........................XXXXXXXXXXXXXXXXXXX CS
                      xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Ribonuc_red_lgC  93 kfidaKekntgeeenrlsnlnisvgvpdlFmeavkedkdwtLfsPrtvvkleklygeefeeeyeeleekakikkkevkakeLfeeiaesawetg 186
                      +f++++ kn+g+ee r+++l+++++vpdlFm++v+++++w+Lf+P++++ l +++g +fe  ye++e++ k + ++v+a++L+++i+e+++etg
       KOO22462.1 365 DFLELR-KNHGKEEARARDLFYALWVPDLFMKRVEANGEWSLFCPDECPGLVDTHGAAFEALYERYEREGKAR-RTVPAQQLWFKILEAQIETG 456
                      ******.**************************************************************5555.6******************* PP

                      XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX....XXXXXXXXXXXX........................XXXXXXXXXXXXXX CS
                      xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxx........................xxxxxxxxxxxxxx RF
  Ribonuc_red_lgC 187 ePgvlfkDtiNrrnvlekakggkIratNlCgEiplleyes.vavCnLasinLakfv........................kkdeegkkefdwde 255
                      +P++l+kD++N+++++  ++ g+Ir++NlC+Ei+ ++ ++ vavCnLasi L++fv                        +  +   ++fd++ 
       KOO22462.1 457 TPYMLYKDAANAKSNQ--QHLGTIRCSNLCTEIIEYTAPDeVAVCNLASIALPRFVraeaggapgggsgapwldaeddgpEVAAAALARFDFEA 548
                      ****************..*********************999***********************************99977778899****** PP

                      XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
                      xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Ribonuc_red_lgC 256 lkkviqlvvraLdnvidvnkyplpeiekntkktRriGlGvmgladalaklgipydseealkfarkitelltyyaykaSvelAkergpfplfeks 349
                      l++v + v+r Ld vi+v++yplpe+++++ ++R+iG+Gv+glad++a+l++p++s+ a++++r+i+e+l+y+a+++S+elA+  gp++++ +s
       KOO22462.1 549 LRRVARFVTRSLDRVISVTHYPLPEARNSNLRHRPIGVGVQGLADVFAQLRLPFESKGARALNRAIFETLYYAALEESCELARTLGPHESYAGS 642
                      ********************************************************************************************** PP

                      XXXXXXXXXXXX..X......XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
                      xxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Ribonuc_red_lgC 350 kyskgilpvdef..eekekedweeLreeikkyGlrnamvtalaPTgsiSliagtssgiePifalvykksvtvgeflevnpvfeeeLkklglwse 441
                      ++s+g+l++d++  ++++++dw  L+++i+++Glrn+ ++a +PT+s+++i g+++++eP+++++y +++ +gef+++np++++eL +lglws 
       KOO22462.1 643 PASRGVLQYDMWgvTPSARWDWAALKAKIATHGLRNSLLLAPMPTASTAQILGNNECFEPYTSNLYARRTLAGEFFVLNPHLQRELSALGLWSR 736
                      ************8866779*************************************************************************** PP

                      XXXXXX...XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
                      xxxxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Ribonuc_red_lgC 442 ellkki...lesvqgleeipeeikrvfktaldidqedhikaqaaiqkwidqsiSktinlpneatvedvkelyllAwklGlKgvtyY 524
                      e ++ i    +sv++l ++p ++++vf+ta++++q+++i+++a++  +idqs+S+++++ +e t+ +++++++++wk GlK+  yY
       KOO22462.1 737 ETRDAIigsGGSVEPLVQLPARLRAVFRTAWEMKQRHLIDMAADRGAFIDQSQSLNLFI-KEPTFTQLSSMHFHSWKRGLKTGLYY 821
                      ******555555***********************************************.*************************9 PP

>> Ribonuc_red_lgN  Ribonucleotide reductase, all-alpha domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   75.6   0.0   3.8e-25   2.3e-21       3      83 .]     197     268 ..     195     268 .. 0.97

  Alignments for each domain:
  == domain 1  score: 75.6 bits;  conditional E-value: 3.8e-25
  Ribonuc_red_lgN   3 ltynalkvledrYllkdengeivEspqqmfmRvAlalaiaealydkleedkdlaeefydlmssqkflpasPtlmnaGtelg 83 
                      ++y++l++l+++Yl + ++g+++E+pq++ mRvAl +++         +d++ + e ydlms+  +++a+Ptl+naG++++
       KOO22462.1 197 YDYFGLRTLQRSYLHRSRDGQPIERPQHLLMRVALCVHG---------DDEAAVLEAYDLMSRGLYTHATPTLFNAGSPRQ 268
                      89*************************************.........9****************************9975 PP

>> Engrail_1_C_sig  Engrailed homeobox C-terminal signature domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.1   1.7e-05       0.1       9      25 ..     244     260 ..     244     265 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 1.7e-05
  Engrail_1_C_sig   9 AlqLMAQGLYNHSTvtv 25 
                      A+ LM+ GLY H+T t 
       KOO22462.1 244 AYDLMSRGLYTHATPTL 260
                      889***********876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (894 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       274  (0.0152825); expected 358.6 (0.02)
Passed bias filter:                      238  (0.0132746); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.60u 0.26s 00:00:00.86 Elapsed: 00:00:00.40
# Mc/sec: 6729.79
//
Query:       KOO22463.1  [L=132]
Description: hypothetical protein Ctob_005374 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
     0.0003   20.5   0.1       0.44   10.4   0.0    3.0  4  HTH_23    Homeodomain-like domain
    0.00098   19.1   0.2      0.043   13.8   0.0    2.8  2  HTH_29    Winged helix-turn helix
     0.0062   17.1   0.0      0.019   15.6   0.0    1.8  2  HTH_32    Homeodomain-like domain
  ------ inclusion threshold ------
      0.041   14.0   0.0       0.26   11.4   0.0    2.3  2  HTH_28    Helix-turn-helix domain


Domain annotation for each model (and alignments):
>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.6   0.0    0.0015       6.7       7      25 ..      10      29 ..       4      29 .. 0.86
   2 !   10.4   0.0   9.9e-05      0.44      27      42 ..      34      49 ..      34      66 .. 0.77
   3 ?   -3.6   0.0       2.4   1.1e+04       5      12 ..      92      99 ..      91     101 .. 0.77
   4 ?   -1.5   0.0      0.53   2.4e+03      24      31 ..     114     121 ..     105     125 .. 0.59

  Alignments for each domain:
  == domain 1  score: 6.6 bits;  conditional E-value: 0.0015
      HTH_23  7 Rlrillllae.GlsvreIAr 25
                 +r++l  +e G+sv++I++
  KOO22463.1 10 AWRVILRWREyGHSVTQISD 29
                589***************96 PP

  == domain 2  score: 10.4 bits;  conditional E-value: 9.9e-05
      HTH_23 27 LgvsrrTvyrwlkryr 42
                L+vsr  vy ++kry+
  KOO22463.1 34 LDVSRAFVYDVIKRYE 49
                79*************4 PP

  == domain 3  score: -3.6 bits;  conditional E-value: 2.4
      HTH_23  5 reRlrill 12
                ++R++ ll
  KOO22463.1 92 EHRAQFLL 99
                68999886 PP

  == domain 4  score: -1.5 bits;  conditional E-value: 0.53
      HTH_23  24 AreLgvsr 31 
                  ++Lg sr
  KOO22463.1 114 VARLGYSR 121
                 33444444 PP

>> HTH_29  Winged helix-turn helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.8   0.0   9.6e-06     0.043      22      40 ..      34      52 ..      20      72 .. 0.80
   2 ?    2.6   0.0      0.03   1.3e+02      16      30 ..     111     125 ..      94     128 .. 0.82

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 9.6e-06
      HTH_29 22 lglsrrtvyrwlkrfeegG 40
                l++sr  vy+++kr+e++G
  KOO22463.1 34 LDVSRAFVYDVIKRYEMTG 52
                789***************9 PP

  == domain 2  score: 2.6 bits;  conditional E-value: 0.03
      HTH_29  16 sqiAkllglsrrtvy 30 
                 ++++++lg+sr+ ++
  KOO22463.1 111 CRAVARLGYSRKVIR 125
                 578999999999887 PP

>> HTH_32  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.0      0.64   2.9e+03       4      14 ..      12      22 ..       2      39 .. 0.64
   2 !   15.6   0.0   4.2e-06     0.019       2      69 ..      41     110 ..      40     114 .. 0.78

  Alignments for each domain:
  == domain 1  score: -1.0 bits;  conditional E-value: 0.64
      HTH_32  4 rwlkRyneeGl 14
                r++ R++e G 
  KOO22463.1 12 RVILRWREYGH 22
                44455555553 PP

  == domain 2  score: 15.6 bits;  conditional E-value: 4.2e-06
      HTH_32   2 vsrwlkRyneeGlegLkdrprrgrpr....klsdevrariiallreeprWsprqlaarlaere.gvkvShstv 69 
                 v+ ++kRy+ +G   +k ++  g+ +     l+  + ++i+al+ + pr ++++ +a+    + gv vS+s +
  KOO22463.1  41 VYDVIKRYEMTG--DVKTHQGHGADPlascALTRYEDHQIVALIIKSPRVTLKEHRAQF-LLDtGVLVSYSVF 110
                 8999*****999..55555455644433347************************9987.4444788999865 PP

>> HTH_28  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   5.8e-05      0.26       6      41 ..      14      53 ..      12      64 .. 0.71
   2 ?   -1.2   0.0      0.52   2.3e+03      18      29 ..     113     124 ..      96     127 .. 0.67

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 5.8e-05
      HTH_28  6 ikllaa.GhsvreaAr.elgi..srrtvyrWikryeegGi 41
                i+++ + Ghsv++++  e+g+  sr  vy+ ikrye  G+
  KOO22463.1 14 ILRWREyGHSVTQISDpEHGLdvSRAFVYDVIKRYEMTGD 53
                55555556666666654677777************98776 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 0.52
      HTH_28  18 aArelgisrrtv 29 
                 a ++lg sr  +
  KOO22463.1 113 AVARLGYSRKVI 124
                 677888888655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (132 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       365  (0.0203581); expected 358.6 (0.02)
Passed bias filter:                      351  (0.0195772); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.37u 0.24s 00:00:00.61 Elapsed: 00:00:00.40
# Mc/sec: 998.60
//
Query:       KOO22464.1  [L=423]
Description: hypothetical protein Ctob_005373, partial [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        5.5    7.5   7.5         35    4.9   7.5    2.5  1  DUF16      Protein of unknown function DUF16


Domain annotation for each model (and alignments):
>> DUF16  Protein of unknown function DUF16
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.9   7.5     0.002        35      23      77 ..       9      63 ..       2     185 .. 0.91

  Alignments for each domain:
  == domain 1  score: 4.9 bits;  conditional E-value: 0.002
                HHHHHB-..BHHHHHHHHHHHH...HHHHHHHHHHHHHHHHHHHHHHHHHHHHH. CS
       DUF16 23 kqlnefkdsnkqrLkkieakvdklgeqinkleqkvekqgekikelkveqkaqgee 77
                k+l++     +qr+ ++ea +++  ++++++ ++   q+e+++ l+++ +a + +
  KOO22464.1  9 KKLDQQLLVANQRIVELEASLKSTSKRLSAVMDADAFQQEQVRVLREQLEAERLK 63
                55555555599**************************************998765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (423 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2012  (0.11222); expected 358.6 (0.02)
Passed bias filter:                      589  (0.0328518); expected 358.6 (0.02)
Passed Vit filter:                        52  (0.00290033); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.55u 0.27s 00:00:00.82 Elapsed: 00:00:00.40
# Mc/sec: 3168.17
//
Query:       KOO22465.1  [L=845]
Description: sodium calcium exchanger 1-like protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      6e-42  143.2  33.4    3.3e-22   79.1  16.3    2.4  2  Na_Ca_ex    Sodium/calcium exchanger protein
    1.2e-19   70.4   0.0    4.2e-17   62.2   0.0    2.6  2  Calx-beta   Calx-beta domain
  ------ inclusion threshold ------
       0.27   11.7   0.4       0.48   10.9   0.4    1.3  1  Na_Ca_ex_C  C-terminal extension of sodium/calcium exchanger 


Domain annotation for each model (and alignments):
>> Na_Ca_ex  Sodium/calcium exchanger protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   79.1  16.3   5.6e-26   3.3e-22       3     150 ..      99     267 ..      97     268 .. 0.91
   2 !   69.7   9.1   4.4e-23   2.6e-19       5     149 ..     661     842 ..     658     844 .. 0.86

  Alignments for each domain:
  == domain 1  score: 79.1 bits;  conditional E-value: 5.6e-26
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHH..................TTCTHHHHHHHHHHHHHHHHHHHHHHHHHHT.TT..HHHHHHHHHHHHHHHHH CS
    Na_Ca_ex   3 fvlfilslllisvladflvssaeeiaks..................lgisgsvlGltllAlgnslpElissiiaalt.ge..vdlaignvlGsnifnll 80 
                 + ++++++l++++ ad++++++e+i++                     ++++v++ltl+Alg+s+pE+++sii +++ g   ++l++++++Gs++fnl+
  KOO22465.1  99 LTILLWMFLAVAIVADLFMEAIEAITSQetttrttlpngrtksvtsRVWNPTVANLTLMALGSSSPEILLSIIEIVSsGFyaGELGPSTIVGSAAFNLM 197
                 67899*********************65789**************99***************************99845599***************** PP

                 THHHHHHHHHHBTTSSCE.CCHHHHHHHHHHHHHHHHHHHTCHHHHH..HTEEHHHHHHHHHHHHHHHHHHHH CS
    Na_Ca_ex  81 lviGlialigslkvdses.lkldlgllllvallllllvlllllplfv..pgrltvleglvllllYalylvlsl 150
                 ++ ++++      +++e  ++ d +++ ++a +++l++++l+++l +  p  +t +eg+ +++l+++++ ls+
  KOO22465.1 198 VISAVCVMA---IPNGEGrYIKDTNVFYMTATWSILAYIWLYVILVIatPDIVTMFEGVFTFVLFFIFVQLSY 267
                 ******999...444444145566******************99977*********************98876 PP

  == domain 2  score: 69.7 bits;  conditional E-value: 4.4e-23
                 HHHHHHHHHHHHHHHHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHHHHHHHHHHHTTT.HHHHHHHHHHHHHHHHHTHHHHHHHHHH......BTTSS CS
    Na_Ca_ex   5 lfilslllisvladflvssaeeiakslgisgsvlGltllAlgnslpElissiiaaltge.vdlaignvlGsnifnlllviGlialigs......lkvds 96 
                 +f + l +i +l++++ + a+++++ +gi+ s+ ++tl+A g+slp++++s +aa++ e +d +ign++Gsn +n++l++Gl++ +++      +++d+
  KOO22465.1 661 CFWVVLSIIGILTAVIGDVAAHLGCCMGIKASTTAITLVAMGTSLPDTFASKTAAANEEyADASIGNITGSNSVNVFLGLGLPWAMAAvywgvlFSPDK 759
                 666777778889********************************************9888**************************9999999867777 PP

                 CE..........................CCHHHHHHHHHHHHHHHHHHHTCHHHHH.......HTEEHHHHHHHHHHHHHHHHHHH CS
    Na_Ca_ex  97 es..........................lkldlgllllvallllllvlllllplfv.......pgrltvleglvllllYalylvls 149
                 e                           l +++g++l+     l+++ll     +v       p +l  l++  l+ll++ly++l 
  KOO22465.1 760 EAswraryseepwyspgmpvafavpagdLGYSVGVFLICGTTTLAVLLL-R--RAVlgfeiggPPHLAMLTAGFLVLLWFLYIALC 842
                 7788888888899******999998888888887766655555443333.2..233578***********************9986 PP

>> Calx-beta  Calx-beta domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.6   0.0     0.003        18      12      99 ..     360     446 ..     350     447 .. 0.74
   2 !   62.2   0.0     7e-21   4.2e-17       3      98 ..     463     559 ..     461     561 .. 0.93

  Alignments for each domain:
  == domain 1  score: 5.6 bits;  conditional E-value: 0.003
                 EEEES-SEEEEECCGSE....EEEEEEEES-..SS-EEEEEEEEESSS-TTTSB---EEEEEE-TT--EEEEEEE----TTTT--..EEEEEEE CS
   Calx-beta  12 vigfeeteysvsEsdgv....vevcVvrksgelerevvVsyrteDgtAtagsDYeavegeLvFkpdetekevnvtivdDdvleed..enFfveL 99 
                 v++f ++++ ++ ++++    v+v Vvr+ g++    +Vsy+  +g +t       ++g++ F+p++   +++++i ++d +  +    F+veL
  KOO22465.1 360 VFEFAHSKVMCNAASTAfepwVDVHVVRH-GSVLAPASVSYTCTEGGGT------VAKGTVEFGPGQLLANLRFEISEEDKAKPSssVIFTVEL 446
                 66777777777666666122245666666.7778999999999999988......899******************999988876334566665 PP

  == domain 2  score: 62.2 bits;  conditional E-value: 7e-21
                 XXXXXXXX-.EEEES-SEEEEECCGSEEEEEEEEES-..SS-EEEEEEEEESSS-TTTSB--.-EEEEEE-TT--EEEEEEE----TTTT--EEEEEE CS
   Calx-beta   3 vtilddDev.vigfeeteysvsEsdgvvevcVvrksgelerevvVsyrteDgtAtagsDYea.vegeLvFkpdetekevnvtivdDdvleedenFfve 98 
                 + i+d +++ v+ ++++ ++v E  g+ +++V r +g+ +++v+  ++t+DgtA a++DYe+ v++ L F+++ te +v+v+iv+D+ +e+de+F + 
  KOO22465.1 463 ARIKDGNAPgVFILNKDLIEVPEHKGSYSIKVRRIDGS-RGTVSCLVSTQDGTAIAPNDYEPiVDQLLEFGDGVTERSVTVNIVNDSSFEGDEDFKLI 559
                 5789999999*************************998.9********************662677889**************************985 PP

>> Na_Ca_ex_C  C-terminal extension of sodium/calcium exchanger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.4     8e-05      0.48      90     114 ..     308     332 ..     293     339 .. 0.86

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 8e-05
  Na_Ca_ex_C  90 eaLskqqKSRAFYRiqaTRkmiGag 114
                 +a    +KS A YRi aTR  +Ga 
  KOO22465.1 308 KATAATKKSYAAYRIGATREATGAA 332
                 5566789****************95 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (845 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       907  (0.0505884); expected 358.6 (0.02)
Passed bias filter:                      491  (0.0273858); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.68u 0.28s 00:00:00.96 Elapsed: 00:00:00.43
# Mc/sec: 5954.00
//
Query:       KOO22466.1  [L=291]
Description: hypothetical protein Ctob_001444 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.1e-39  134.9   0.0    3.9e-39  134.5   0.0    1.1  1  Glyco_hydro_127  Beta-L-arabinofuranosidase, GH127


Domain annotation for each model (and alignments):
>> Glyco_hydro_127  Beta-L-arabinofuranosidase, GH127
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  134.5   0.0   2.2e-43   3.9e-39     180     427 ..       1     274 [.       1     284 [. 0.88

  Alignments for each domain:
  == domain 1  score: 134.5 bits;  conditional E-value: 2.2e-43
                      HHHHHHHHHHHHT-CHHHHHHHHCCHHCCHCCT-HCTTT-SSTCGCHHCHHCCHHHHHHHHHHHHHHHHHCTTHCCHHHHHHHHHHHHHHCB-T CS
  Glyco_hydro_127 180 ieealvklyelTgdkrYldlAkrfidergldpeklaykqdelpvrhqntaigkavRatylysgladvyeetgddkllkaaerlwdnvvtkkmyv 273
                      + eal++l+++T+++ +l+lA  f + +++ p  l ++   ++ +h+nt+ +++        g+   ye tgdd+l+ aae +wd++ ++++++
       KOO22466.1   1 MSEALADLARVTRNSSWLQLAALFERPCFVGPLALGDGAGAIERVHANTHLPQLL-------GAMARYEATGDDALRMAAEVFWDELSKHHLFA 87 
                      579*****************************99*********************.......******************************** PP

                      TS-B-BCEEE..........CE--STT--HCCCH-.......-BHHHHHHHHHHHHHHHHCH...............--CHHHHHHHHHHHHTT CS
  Glyco_hydro_127 274 tGGigakhdg..........EaFgppyelpnrlay.......aEtCasinmlklarrllelt...............pdakyadvlEralyNsi 335
                      tGG  + + +                    ++ ++       aEtC + n ++++rrll+++               +  ++a +lEr+lyN +
       KOO22466.1  88 TGGSTTGEVWlraglqgdavA---------HQRKDnywahdqAETCVAHNSMRVSRRLLQWSpwptgadaspaeataRVLRHASYLERTLYNAV 172
                      *****9977766666665432.........222223333345*****************************9998877789************* PP

                      GGGB-TTT.S-BBSB--STTTBS--SS.......SC-BTTTTT-CHHHHHHHHCCGGGGGSEEEE....TTEEEE-S-SSEEEEECGCT-EEEE CS
  Glyco_hydro_127 336 lagvsldg.ksffYvnplesgskklrk.......lystkwdscaCCppnglrtvaklgeyiYaes....ddtvyvnLyiaselklklkgkevel 417
                      l+ ++ +  +++ Y+ pl sg +k           +s ++++++CC+++g++ +a+l+++i++++     + ++v + ++s+l ++++   +++
       KOO22466.1 173 LGTQRGTLpGQMLYMFPLGSGVSKAGIpdapqghHWSDEEHHFWCCQGSGIEAFARLADTIFWRRdggsPPLLFVLQLLPSSLIWREAA--IRV 264
                      ******999*********888777544778888889*****************************5544448999999********998..999 PP

                      EEEE-TTSSS CS
  Glyco_hydro_127 418 eqetnyPweg 427
                          +yP ++
       KOO22466.1 265 AVGGDYPGSS 274
                      9999999765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (291 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       246  (0.0137208); expected 358.6 (0.02)
Passed bias filter:                      210  (0.0117129); expected 358.6 (0.02)
Passed Vit filter:                         9  (0.00050198); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.28s 00:00:00.69 Elapsed: 00:00:00.43
# Mc/sec: 2025.04
//
Query:       KOO22467.1  [L=224]
Description: hypothetical protein Ctob_001447 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
     0.0048   17.3   0.0      0.013   15.9   0.0    1.6  1  Sulfotransfer_3  Sulfotransferase family


Domain annotation for each model (and alignments):
>> Sulfotransfer_3  Sulfotransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.0   7.1e-07     0.013     127     214 ..      47     153 ..      46     155 .. 0.62

  Alignments for each domain:
  == domain 1  score: 15.9 bits;  conditional E-value: 7.1e-07
                      EEEEEE--H.HHHHHHH.HHTT--------.............--..-HHHHHHHHHHHHHHHHHHHHHH.............S-TTSEEEEEH CS
  Sulfotransfer_3 127 kfihlvRdpvdtvlssy.vslfgkkresys.............edsldeledaleewarayerllaarar.............lppdrfldvrY 193
                      +f+h++Rdp++ vls y  +l +++r  ++              +sl+ +e+ ++e ++++        +              +    l++r 
       KOO22467.1  47 RFVHVIRDPLEVVLSGYeYHLKTTERWALRpdkrfknksyrsyLNSLSLAEGLAAELKHSL--------HdnlktmprvlnrtGGRPCTLTLRL 132
                      8***************977786555655558555543333222111211122233333333........1333345556666544445799*** PP

                      HHHHH-HHHHHHHHHHHHT-- CS
  Sulfotransfer_3 194 edLvadpegtlrriyeflglp 214
                      ed+ +d +gt+ r+ + +g++
       KOO22467.1 133 EDFERDWRGTTARLWDLFGVE 153
                      **************9999986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (224 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       338  (0.0188521); expected 358.6 (0.02)
Passed bias filter:                      316  (0.0176251); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.26s 00:00:00.69 Elapsed: 00:00:00.43
# Mc/sec: 1562.16
//
Query:       KOO22468.1  [L=317]
Description: short chain dehydrogenase family protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.6e-20   73.4   0.0    2.7e-20   72.7   0.0    1.3  1  adh_short       short chain dehydrogenase
    4.7e-15   55.8   0.0    7.5e-15   55.1   0.0    1.2  1  adh_short_C2    Enoyl-(Acyl carrier protein) reductase
    2.4e-06   27.6   0.2    6.5e-06   26.2   0.0    1.8  2  KR              KR domain
    4.7e-05   23.0   0.0    8.1e-05   22.2   0.0    1.4  1  Epimerase       NAD dependent epimerase/dehydratase family
     0.0012   18.0   0.8     0.0016   17.6   0.0    1.5  2  RmlD_sub_bind   RmlD substrate binding domain
     0.0039   17.2   0.1     0.0095   15.9   0.1    1.7  1  ADH_zinc_N      Zinc-binding dehydrogenase
     0.0076   15.0   0.0       0.01   14.6   0.0    1.2  1  Oxidored_nitro  Nitrogenase component 1 type Oxidoreductase
  ------ inclusion threshold ------
       0.03   14.2   0.0      0.053   13.4   0.0    1.4  1  NAD_binding_10  NAD(P)H-binding
      0.079   13.4   0.0       0.14   12.6   0.0    1.6  1  NAD_binding_7   Putative NAD(P)-binding
      0.093   12.4   0.4       0.22   11.2   0.4    1.6  1  DUF309          Domain of unknown function (DUF309)


Domain annotation for each model (and alignments):
>> adh_short  short chain dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   72.7   0.0   1.5e-23   2.7e-20       1     190 [.      83     272 ..      83     275 .. 0.85

  Alignments for each domain:
  == domain 1  score: 72.7 bits;  conditional E-value: 1.5e-23
                 SEEEEESTTSHHHHHHHHHHHHTT-EEEEEESCHHHHHHHHHHHHHTTSEEEEEE-TTTSHHHHHHHHHHHHHHH..SSESEEEE---S..S--SSGGG CS
   adh_short   1 kvvlvtGassGIGraiakelakeGakvvvvdrseekleevakelkeegakalaiqvDvtdreevealvekavkkl..gkldvLvnNAGi..tgsgpfse 95 
                 k vl+tG+ +G+G+a++kel ++Ga+v+vv+r++++       l ++    ++  vDvtd ++v+    k++++l  +++d ++nNAG   +  ++ ++
  KOO22468.1  83 KRVLITGGNQGLGLALVKELHAQGAEVIVVGRRSSPE------LDALVGVQVITGVDVTDTAAVS---GKMIDELkgEPVDYIINNAGYfwEPHETLEN 172
                 679****************************998876......3333223578899***877665...44555554489**********99999999** PP

                 CSHHHHHHHHHHHTHHHHHHHHHHHHHHHHCTTEEEEEEEEGGG.....TSB-TTBHHHH..HHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBSSHHH CS
   adh_short  96 lseeewervievNltgvflltravlpamlkqssGrIvnvsSvag.....kvpvagvaaYs..AsKaavagltrslakelaptgirvnavaPGlvdTdma 187
                 ++ ee  + i++   g++ ++ a++++     +G+I+ v+S+a      + +++++  Y+   s aa ++    la+e++ +gi v  ++PG+ +T+m+
  KOO22468.1 173 MNFEEQMKQIDICGLGPLRVSWAMINK--GLVKGSIIIVTSQADsaewrFTQNPEGGDYGhhMSRAACNMGGVLLAQEIKGKGIPVLLIHPGFNRTGMT 269
                 *************************99..568**********962233345667788897446***********************************9 PP

                 HHH CS
   adh_short 188 kel 190
                  + 
  KOO22468.1 270 SKF 272
                 875 PP

>> adh_short_C2  Enoyl-(Acyl carrier protein) reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.1   0.0   4.2e-18   7.5e-15       4     202 ..      92     292 ..      89     300 .. 0.86

  Alignments for each domain:
  == domain 1  score: 55.1 bits;  conditional E-value: 4.2e-18
                   TSHHHHHHHHHHHTT-EEEEEESSGGHHHHHHHHHHHTTSEE.EE--TTSHHHHH.HHHHHHHHHHSSEEEEEE-----EGCSS-GGGH-HHHHHHH CS
  adh_short_C2   4 sgIGraiAkalaeeGaevvltdlneeakkrveelaeelgaev.lecDVtdeeqve.alveevvekfgklDilvnnagiapklkgpfletsreefdra 98 
                   +g+G a++k+l+++Gaev+++ ++ +      el + +g +v   +DVtd+++v  ++++e++ +   +D+++nnag+  + ++ +++++ ee  + 
    KOO22468.1  92 QGLGLALVKELHAQGAEVIVVGRRSSP-----ELDALVGVQViTGVDVTDTAAVSgKMIDELKGE--PVDYIINNAGYFWEPHETLENMNFEEQMKQ 181
                   89*******************999998.....777888999659*********974788888765..8***********998999999********* PP

                   HHHHTHHHHHHHHHHHHHCTSCCEEEEEEEGGGTSBSTTTT.......HHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEE--BHCTGGGGSTTHHHH CS
  adh_short_C2  99 ldvnlyslfllakaalplmkeggsivnlssvgaervvpnyn.......aygaaKaalealtrylAvelgpkgiRvNavspgpikTlaasgikgfdel 188
                   +d+   + ++++ a+++    +gsi+ ++s + +  +  ++         ++++aa++     lA e+  kgi v  ++pg+ +T ++s++k+  ++
    KOO22468.1 182 IDICGLGPLRVSWAMINKGLVKGSIIIVTSQADSAEWRFTQnpeggdyGHHMSRAACNMGGVLLAQEIKGKGIPVLLIHPGFNRTGMTSKFKHIWDI 278
                   **************99977777999999988666544333222355344569*****************************************9999 PP

                   HHHHHHHSTTSS-B CS
  adh_short_C2 189 leelearaplgrlg 202
                   + ++ea+   +r+ 
    KOO22468.1 279 EGAVEASVGAKRVL 292
                   99999988888854 PP

>> KR  KR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.8   0.0       5.7     1e+04      20      35 ..       9      24 ..       6      40 .. 0.65
   2 !   26.2   0.0   3.6e-09   6.5e-06       3     104 ..      85     177 ..      84     183 .. 0.76

  Alignments for each domain:
  == domain 1  score: -3.8 bits;  conditional E-value: 5.7
                HHHHHS-EEEEE-SS. CS
          KR 20 laekgarhlvllsRsa 35
                l+ ++a+ lv+ sR +
  KOO22468.1  9 LCLQAASALVVGSRAH 24
                5556677777777764 PP

  == domain 2  score: 26.2 bits;  conditional E-value: 3.6e-09
                 EEEETTTSHHHHHHHHHHHHHHS-EEEEE-SS..--HHHHHHHHHHHHT.T-EEEE----TT-HHHHH.HHHHHHHHHSS---EEEE------..---T CS
          KR   3 ylitGGlGgLGlelarwlaekgarhlvllsRsaaadedskaliaeleal.gaevevvaaDvsdkdave.alleeikaeeppikGvihaAgvlr..dkll 97 
                 +litGG  gLGl+l++ l ++ga+ +v ++R+++          el al g++v +  +Dv+d +av+ ++++e+k  ++p+  +i+ Ag +    ++l
  KOO22468.1  85 VLITGGNQGLGLALVKELHAQGAEVIV-VGRRSS---------PELDALvGVQV-ITGVDVTDTAAVSgKMIDELK--GEPVDYIINNAGYFWepHETL 170
                 69********************98665.677722.........34555436776.4578*******9846888887..789********9875346778 PP

                 TT--HHH CS
          KR  98 eemtaed 104
                 e+m+ e+
  KOO22468.1 171 ENMNFEE 177
                 8887664 PP

>> Epimerase  NAD dependent epimerase/dehydratase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.2   0.0   4.5e-08   8.1e-05       1      73 [.      85     161 ..      85     176 .. 0.81

  Alignments for each domain:
  == domain 1  score: 22.2 bits;  conditional E-value: 4.5e-08
                 EEEETTTSHHHHHHHHHHHHCTSEEEEEES-STTTTCHHCHHCEEEE--TT-HH....HHHHHHHHHT-SEEEE--S CS
   Epimerase   1 ilVtGatGfiGsalvkallekgyevigldrlssasntarledlelveldltdrs....alerlfkeeqpdavihlAa 73 
                 +l+tG++  +G alvk+l ++g evi++ r+ss +  a+     ++ +d+td +    ++ + +k e +d++i+ A+
  KOO22468.1  85 VLITGGNQGLGLALVKELHAQGAEVIVVGRRSSPELDALVGVQVITGVDVTDTAavsgKMIDELKGEPVDYIINNAG 161
                 79*****************************66666665555599999****9955555566677789999999987 PP

>> RmlD_sub_bind  RmlD substrate binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.2       1.5   2.7e+03     245     259 ..      38      52 ..      13      64 .. 0.72
   2 !   17.6   0.0     9e-07    0.0016       2      61 ..      84     162 ..      83     174 .. 0.85

  Alignments for each domain:
  == domain 1  score: -2.8 bits;  conditional E-value: 1.5
                    CS--SS---SBE-B- CS
  RmlD_sub_bind 245 eyptpAkRPanSvLd 259
                    + p+ A+RP +S+ d
     KOO22468.1  38 SSPEVAPRPGYSKAD 52 
                    457789999998765 PP

  == domain 2  score: 17.6 bits;  conditional E-value: 9e-07
                    EEEEESTTSHHHHHHHHHCTTTSEEEEEE-TT...............T--TTSHHHHH.HHHHHH-...-SEEEE---- CS
  RmlD_sub_bind   2 kilvtGanGqlGseLakqlaeeglevlaltre...............eldltdaeava.ellkeak...pdvvvnaAAy 61 
                    ++l+tG+n  lG +L+k+l+++g+ev+ ++r+                +d+td +av  ++++e k    d ++n A y
     KOO22468.1  84 RVLITGGNQGLGLALVKELHAQGAEVIVVGRRsspeldalvgvqvitGVDVTDTAAVSgKMIDELKgepVDYIINNAGY 162
                    79***************************99999*99999999999999999999997355655551115688888877 PP

>> ADH_zinc_N  Zinc-binding dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.1   5.3e-06    0.0095       1      67 [.      93     161 ..      93     169 .. 0.73

  Alignments for each domain:
  == domain 1  score: 15.9 bits;  conditional E-value: 5.3e-06
                 HHHHHHHHHHHHTT-EEEEEESSHHHHHHHHHTTESEEEET..TTC.HHHHHHHHHTTTSSEEEEEESSC CS
  ADH_zinc_N   1 gvGlaavqlAkalGaeviavdsseeklelakklGadeviny..kea.dlverikeltggegvdvvfecvG 67 
                 g+Gla+v+ ++a Gaevi+v + ++  el +  G+ ++     +++  ++ ++ +  +ge+vd++++ +G
  KOO22468.1  93 GLGLALVKELHAQGAEVIVVGRRSS-PELDALVGVQVITGVdvTDTaAVSGKMIDELKGEPVDYIINNAG 161
                 89*****************999888.2333335655554444444445555555555599*******998 PP

>> Oxidored_nitro  Nitrogenase component 1 type Oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.6   0.0   5.8e-06      0.01     256     311 ..      65     122 ..      47     182 .. 0.68

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 5.8e-06
                     HHHHHHHHHHHH.HHHTT-EEEEECSS.HHHHHHHHHHHHHT-EEEEEEESSS-HHHH CS
  Oxidored_nitro 256 rarlldaladyh.eylagkrvaiygdp.drvvalarllkelGmevvaagtetahrdde 311
                      ar+ld    y  +yl+gkrv+i+g+   + +al++ l+  G+ev+++g +++ + d 
      KOO22468.1  65 NARYLDIETVYDgSYLKGKRVLITGGNqGLGLALVKELHAQGAEVIVVGRRSSPELDA 122
                     244444444433589***********989********************999866554 PP

>> NAD_binding_10  NAD(P)H-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.0   2.9e-05     0.053       1      58 [.      89     144 ..      89     184 .. 0.83

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 2.9e-05
                     TTTSHHHHHHHHHHHHC-T-EEEEEETTHH.HCHHHHCTTTCEEEE.--TT-CCHHHHHH CS
  NAD_binding_10   1 GAtGkvGrllvkellargghevtalvRnpe.klaeleaeeglevve.gdvtdvedlaeal 58 
                     G++ + G +lvkel a+g  ev ++ R+++ +l++l    g++v++ +dvtd++++   +
      KOO22468.1  89 GGNQGLGLALVKELHAQG-AEVIVVGRRSSpELDAL---VGVQVITgVDVTDTAAVSGKM 144
                     889999***********5.99988877655155654...799999945*****9998665 PP

>> NAD_binding_7  Putative NAD(P)-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   7.9e-05      0.14       5      49 ..      80     125 ..      78     216 .. 0.81

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 7.9e-05
  NAD_binding_7   5 lkgkkvlvvGgGe.vAarkvrklleagakvtvvapevkeeleelvk 49 
                    lkgk+vl+ Gg++ +++  v+ l ++ga+v+vv  ++++el+ lv 
     KOO22468.1  80 LKGKRVLITGGNQgLGLALVKELHAQGAEVIVVGRRSSPELDALVG 125
                    799********9669*******************998777775443 PP

>> DUF309  Domain of unknown function (DUF309)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.4   0.00012      0.22       8      22 ..     158     172 ..     155     177 .. 0.88

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00012
      DUF309   8 fnegeffeaHEvlEe 22 
                  n+g+f+e HE+lE 
  KOO22468.1 158 NNAGYFWEPHETLEN 172
                 47************6 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (317 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       481  (0.026828); expected 358.6 (0.02)
Passed bias filter:                      436  (0.0243181); expected 358.6 (0.02)
Passed Vit filter:                        51  (0.00284455); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.50u 0.25s 00:00:00.75 Elapsed: 00:00:00.42
# Mc/sec: 2241.16
//
Query:       KOO22469.1  [L=680]
Description: low-co2-inducible protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.2e-13   50.5  12.8    4.8e-08   32.7   2.4    2.4  2  zf-C2HC_2      zinc-finger of a C2HC-type
  ------ inclusion threshold ------
      0.042   13.7   2.1       0.12   12.2   2.1    1.8  1  TIP39          TIP39 peptide
       0.07   12.9   2.4       0.09   12.6   0.1    1.9  2  zf-CpG_bind_C  CpG binding protein zinc finger C terminal dom
        8.9    7.5   8.4        4.2    8.5   0.5    2.4  2  zf-C2H2_4      C2H2-type zinc finger


Domain annotation for each model (and alignments):
>> zf-C2HC_2  zinc-finger of a C2HC-type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.1   2.9   1.1e-08   4.8e-05       2      25 .]     144     167 ..     143     167 .. 0.93
   2 !   32.7   2.4   1.1e-11   4.8e-08       2      25 .]     256     279 ..     255     279 .. 0.96

  Alignments for each domain:
  == domain 1  score: 23.1 bits;  conditional E-value: 1.1e-08
   zf-C2HC_2   2 lvpCpkCgRsFnpdrlekHepvCk 25 
                 + +C +C+R+F  drl++He  C+
  KOO22469.1 144 MAECACCNRRFRLDRLPRHEEACR 167
                 678********************6 PP

  == domain 2  score: 32.7 bits;  conditional E-value: 1.1e-11
   zf-C2HC_2   2 lvpCpkCgRsFnpdrlekHepvCk 25 
                 +vpCp+CgR+F++ + e+H+++Ck
  KOO22469.1 256 RVPCPHCGRKFAALPAERHIAKCK 279
                 69*********************8 PP

>> TIP39  TIP39 peptide
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   2.1   2.8e-05      0.12       5      28 ..     588     611 ..     586     615 .. 0.90

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 2.8e-05
       TIP39   5 spgaplakRslvlADDAAFREkak 28 
                  ++++ ++R+++ AD+A F Ek+k
  KOO22469.1 588 RRSSNASRRDVAAADEASFEEKSK 611
                 578999*****************9 PP

>> zf-CpG_bind_C  CpG binding protein zinc finger C terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   0.4       0.2   9.1e+02      83     113 ..     144     174 ..     124     179 .. 0.86
   2 ?   12.6   0.1     2e-05      0.09      11     105 ..     181     278 ..     174     286 .. 0.66

  Alignments for each domain:
  == domain 1  score: -0.6 bits;  conditional E-value: 0.2
  zf-CpG_bind_C  83 svaCvtCgheislkkalkHmekCfakyEsqt 113
                    +  C  C  +  l    +H e C + +E+q 
     KOO22469.1 144 MAECACCNRRFRLDRLPRHEEACRRAAERQK 174
                    467999*****************99999885 PP

  == domain 2  score: 12.6 bits;  conditional E-value: 2e-05
  zf-CpG_bind_C  11 qriqewqss.psvaeeenkkklekirkeqeeakkklkelekklkk.Leeliekakklslkeeeeee.edeedselsvaCvtCgheislkkalkHme 103
                     r q+wq +  ++   +n  k+  + k   ea+++++e ++k+ +     i++a  ++ +  +++   +e d++  v C  Cg + ++  a +H+ 
     KOO22469.1 181 PRAQRWQGDaDAEQAVQNAVKRGLLDKPDPEAQASQREAKRKKWQkQSLQIRRAAAAAKDGGATAPmLAEADDDDRVPCPHCGRKFAALPAERHIA 276
                    57788887745555556666666666666666666666555443303333444444433333332224499999********************** PP

  zf-CpG_bind_C 104 kC 105
                    kC
     KOO22469.1 277 KC 278
                    ** PP

>> zf-C2H2_4  C2H2-type zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.3   2.0      0.09   4.1e+02       2      21 ..     146     164 ..     146     166 .. 0.87
   2 ?    8.5   0.5   0.00094       4.2       2      21 ..     258     276 ..     257     279 .. 0.83

  Alignments for each domain:
  == domain 1  score: 2.3 bits;  conditional E-value: 0.09
   zf-C2H2_4   2 kCpiCgksFsskkaLlrHlk 21 
                 +C  C+++F + ++L rH +
  KOO22469.1 146 ECACCNRRF-RLDRLPRHEE 164
                 5999*****.9999999976 PP

  == domain 2  score: 8.5 bits;  conditional E-value: 0.00094
   zf-C2H2_4   2 kCpiCgksFsskkaLlrHlk 21 
                 +Cp+Cg+ F    a  rH++
  KOO22469.1 258 PCPHCGRKFAALPA-ERHIA 276
                 7********98888.88876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (680 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1061  (0.0591779); expected 358.6 (0.02)
Passed bias filter:                      466  (0.0259914); expected 358.6 (0.02)
Passed Vit filter:                        57  (0.00317921); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.64u 0.26s 00:00:00.90 Elapsed: 00:00:00.45
# Mc/sec: 4521.87
//
Query:       KOO22470.1  [L=117]
Description: hypothetical protein Ctob_001440 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
     0.0026   18.5   3.0       0.31   11.9   0.4    2.2  2  Histone_HNS    H-NS histone family
  ------ inclusion threshold ------
      0.036   14.6   0.9      0.094   13.3   0.1    1.9  2  MerR-DNA-bind  MerR, DNA binding


Domain annotation for each model (and alignments):
>> Histone_HNS  H-NS histone family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.9   0.4   3.4e-05      0.31      30      56 ..       4      30 ..       1      46 [. 0.79
   2 !    7.5   0.1    0.0008       7.2      27      76 ..      53     107 ..      40     115 .. 0.62

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 3.4e-05
                 XXXXXXX----SSS-----EEEEE... CS
  Histone_HNS 30 elaaeyGltleelaaeakkakkkkaka 56
                 e ++eyGl++e+l+ ++k+a+k++++a
   KOO22470.1  4 ETMREYGLDIEDLKTARKAAAKAAQEA 30
                 78***********88877777766544 PP

  == domain 2  score: 7.5 bits;  conditional E-value: 0.0008
                  XXXXXXXXXX----SSS-----EEEEE...........---TTT-SS.S.-EEEEES CS
  Histone_HNS  27 eirelaaeyGltleelaaeakkakkkkakakk......vpaKYrdpe.tegetWsGr 76 
                  ++ +++a+ Gl+l+e+ ++ + ++ ++ +  +      ++a  +d+e    + W  r
   KOO22470.1  53 AVAAAMADLGLSLDEIRNAMRHRGTSTLE--DepedllRKAVTWDEEvARAKKWALR 107
                  578899**********7775555554433..13467775554444331234444444 PP

>> MerR-DNA-bind  MerR, DNA binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.4   0.1      0.19   1.7e+03      17      38 ..      13      31 ..       5      38 .. 0.51
   2 ?   13.3   0.1     1e-05     0.094       8      41 ..      56      91 ..      50     107 .. 0.65

  Alignments for each domain:
  == domain 1  score: -0.4 bits;  conditional E-value: 0.19
                   HHHHHHHHHHHHSTTTBHHHHH CS
  MerR-DNA-bind 17 LdeIrelLalyddrappcqdvr 38
                   +++ ++     +  a+++q++r
     KOO22470.1 13 IEDLKTAR---KAAAKAAQEAR 31
                   44444333...22444555554 PP

  == domain 2  score: 13.3 bits;  conditional E-value: 1e-05
                   HHHHHTT--HHHHHHHHHHHHS..TTTBHHHHHHHH CS
  MerR-DNA-bind  8 rrarrlGFsLdeIrelLalydd..rappcqdvrall 41
                     + +lG+sLdeIr  +  +     +++ +d+++ +
     KOO22470.1 56 AAMADLGLSLDEIRNAMRHRGTstLEDEPEDLLRKA 91
                   55568************6655543244444444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (117 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       795  (0.0443416); expected 358.6 (0.02)
Passed bias filter:                      468  (0.026103); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.40u 0.25s 00:00:00.65 Elapsed: 00:00:00.40
# Mc/sec: 875.72
//
Query:       KOO22471.1  [L=341]
Description: methyltransferase type 11 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.5e-05   23.4   0.0    7.4e-05   22.6   0.0    1.3  1  Methyltransf_23  Methyltransferase domain
  ------ inclusion threshold ------
      0.076   13.7   0.0        0.2   12.4   0.0    1.7  1  Methyltransf_11  Methyltransferase domain
       0.13   12.4   0.0       0.23   11.6   0.0    1.3  1  Synuclein        Synuclein


Domain annotation for each model (and alignments):
>> Methyltransf_23  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.6   0.0   1.2e-08   7.4e-05      21     161 ..      74     225 ..      57     228 .. 0.76

  Alignments for each domain:
  == domain 1  score: 22.6 bits;  conditional E-value: 1.2e-08
  Methyltransf_23  21 raggrvLdiGcGtGillevlrengfsvtgvDlspeaveiaekakkaqkdqfdeqeaaepqg..kfdlIvlrevlehvp..dppellrqiatllk 110
                        ++++Ld+G+G+G   ++lr++g    gv+  ++       +       +++q+ ++p +    dl+ + ev eh+p       lr+++  + 
       KOO22471.1  74 GLNASLLDVGAGKGLYVRYLRAHGLRANGVEGVEN-------IAALTGGLVRQQDLTKPMAcePNDLVMCLEVGEHIPwpFQYVFLRNLNCSTH 160
                      4689*********************9999999764.......55667888888889998888899*************6446689999999999 PP

  Methyltransf_23 111 pg.Gylllse..plasl.............kedrllldwlylvpagrhi.sffsarslkelleeaGle 161
                      p  G+l+l+   p                 + +++l +++ + ++++++ +     ++ ++l ++G+e
       KOO22471.1 161 PTtGRLVLTWapP---GqygsghvnnrpasAIRNWLTSNHSCQNQSGWSgQEVVGCDWQQQLPGFGFE 225
                      9868887766553...2344777777777668888888877776666666666667777777777776 PP

>> Methyltransf_11  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   3.3e-05       0.2       1      75 [.      80     144 ..      80     156 .. 0.80

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 3.3e-05
                      EEET-TTSHHHHHHHHTTSEEEEEES-HHHHHHHHHHCCHHT-EEEETTEECCCTSS-TT-EEEEEEES-CCC-C CS
  Methyltransf_11   1 LdvGcGtGrlaealakrgarvvgvDlskemlklakekaseeglkvefvvadaeklpfednsfDlvvssevlhhve 75 
                      LdvG+G+G+++++l  +g r  gv+  ++  +l      +      ++++d++k p++ +  Dlv++ ev +h++
       KOO22471.1  80 LDVGAGKGLYVRYLRAHGLRANGVEGVENIAALT----GGL-----VRQQDLTK-PMACEPNDLVMCLEVGEHIP 144
                      8************************888877444....332.....27888888.88888899999999988884 PP

>> Synuclein  Synuclein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   3.9e-05      0.23      79     110 ..     100     132 ..      94     142 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 3.9e-05
   Synuclein  79 ektvegaeniaaatG.lvkkedlekdlpeeege 110
                 +++veg+eniaa tG lv+++dl+k++  e ++
  KOO22471.1 100 ANGVEGVENIAALTGgLVRQQDLTKPMACEPND 132
                 679********98877********999777655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (341 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       269  (0.0150036); expected 358.6 (0.02)
Passed bias filter:                      237  (0.0132188); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.47u 0.22s 00:00:00.69 Elapsed: 00:00:00.41
# Mc/sec: 2470.88
//
Query:       KOO22472.1  [L=176]
Description: hypothetical protein Ctob_001442 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.039   14.2   0.1      0.054   13.7   0.1    1.1  1  AP3D1     AP-3 complex subunit delta-1
      0.067   13.3   1.5       0.67   10.1   0.4    2.2  2  DUF4710   Domain of unknown function (DUF4710)
       0.52   11.2   2.3         39    5.2   2.3    2.9  1  DUF3235   Protein of unknown function (DUF3235)


Domain annotation for each model (and alignments):
>> AP3D1  AP-3 complex subunit delta-1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.1     9e-06     0.054      86     142 ..      74     136 ..      59     143 .. 0.66

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 9e-06
       AP3D1  86 kkkkkkkkkkkkkkkk..kkkkkkeeesseseeddkplha....vnrttlemPegaelsDsed 142
                 ++k+ + k+k+kk kk  +k+  + e  + + e ++ +      +  ++ e Peg+++ D ++
  KOO22472.1  74 ESKRSAFKEKQKKYKKawRKSLSDLEFATTDAEAITAVDNlyalIKENNFEVPEGVRKMDLDQ 136
                 22333333444444443355666666666666666666657888999**********999765 PP

>> DUF4710  Domain of unknown function (DUF4710)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.4   0.00011      0.67      28      51 ..      72      95 ..      60      98 .. 0.83
   2 ?    2.1   0.0     0.035   2.1e+02      20      66 ..     119     164 ..     106     171 .. 0.65

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.00011
     DUF4710 28 akeekkkkkkqklKKyrKnvgKal 51
                + e k+   k+k KKy+K  +K l
  KOO22472.1 72 TDESKRSAFKEKQKKYKKAWRKSL 95
                467788888*********999987 PP

  == domain 2  score: 2.1 bits;  conditional E-value: 0.035
     DUF4710  20 eededqkeakeekkkkkkqklKKyrKnvgKalrlswrcLvlGlqnla 66 
                 +e+ + +  +  +k    q +K ++ ++gK +r++ + L l +++++
  KOO22472.1 119 KEN-NFEVPEGVRKMDLDQVYKTVQPKIGKNARMNFQKLDLIVRDIT 164
                 444.4444455555566678999999999999998887765555555 PP

>> DUF3235  Protein of unknown function (DUF3235)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.2   2.3    0.0065        39       1      15 [.      29      78 ..      29     150 .. 0.55

  Alignments for each domain:
  == domain 1  score: 5.2 bits;  conditional E-value: 0.0065
                XXTTS--HHHHTTT.................................... CS
     DUF3235  1 GLnSAPtpRdaaaa...................................q 15
                GLnS +  R++ a                                     
  KOO22472.1 29 GLNSNSCRRSVLAGaaafltlgplapamantapmldkpmegfgtdeskrS 78
                88888888886655445555555554444444455555555555544441 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (176 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       723  (0.0403257); expected 358.6 (0.02)
Passed bias filter:                      510  (0.0284455); expected 358.6 (0.02)
Passed Vit filter:                        47  (0.00262145); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.45u 0.25s 00:00:00.70 Elapsed: 00:00:00.42
# Mc/sec: 1268.46
//
Query:       KOO22473.1  [L=420]
Description: hypothetical protein Ctob_001449 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.98    9.5  23.4       0.23   11.5  20.0    1.6  2  YL1       YL1 nuclear protein


Domain annotation for each model (and alignments):
>> YL1  YL1 nuclear protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.1      0.51   9.1e+03     135     149 ..      50      64 ..      32      74 .. 0.49
   2 ?   11.5  20.0   1.3e-05      0.23      34     194 ..     204     386 ..     179     394 .. 0.50

  Alignments for each domain:
  == domain 1  score: -3.5 bits;  conditional E-value: 0.51
                 xxxxxxxxxxxxxxx RF
         YL1 135 slltpkrRkssRast 149
                 ++l++k++  +R++ 
  KOO22473.1  50 ASLATKEKMEARQAL 64 
                 233333333333333 PP

  == domain 2  score: 11.5 bits;  conditional E-value: 1.3e-05
                 xxxxxxxxxxxxxx................................xxxxxxxxxxxxxx.....xxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxx RF
         YL1  34 Deefeseeeeeeee................................nsDsdfdsdeedee.....sdeeedeeegekelerqerkkr...kkekkkrka 92 
                 De + +eeee+ ee                                             +         +de++ e ++e+   +++   +   k    
  KOO22473.1 204 DETYAEEEEEQVEErkpvkidegqvaviqesgevveascapsstkqA------------PvamkpPRVAKDESAPEPKVEQTTGEAEpteAPVAK---- 286
                 77777777666666778888888888888888854444444444430............133333333333333333333333333322111111.... PP

                 xxxxxxxxxxxxxxxxxxxxxxxxx..xx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
         YL1  93 qkkkskkkkkkqkkkkkkkidpqak..ep.rpkkkseraswlpaeslltpkrRkssRastvenkeqleerlkereerrkkilermrkkaarkkkkkker 188
                  k++++k+k+++ ++   +++p+ k  +  r k k++ +++ + e++   +  +s+   +v++ +   + +k+++er +k++ ++ k+aa k ++ k++
  KOO22473.1 287 -KRSPRKAKESAPDAPDGNVQPTDKpvKDyRAKAKKKGSKKKKDEEE---TSTQSKAVIVVQSMQRKNKAVKKKKER-EKAVVTITKHAAAKAENVKKK 380
                 .1122222222233333333332222222333333322222222222...323444445555555555555555555.666667777777777777779 PP

                 xxxxxx RF
         YL1 189 plTQee 194
                 + TQ e
  KOO22473.1 381 RSTQPE 386
                 9**976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (420 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2732  (0.152379); expected 358.6 (0.02)
Passed bias filter:                      805  (0.0448993); expected 358.6 (0.02)
Passed Vit filter:                       110  (0.00613531); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.72u 0.33s 00:00:01.05 Elapsed: 00:00:00.44
# Mc/sec: 2856.02
//
Query:       KOO22474.1  [L=510]
Description: clavaminate synthase-like protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    7.9e-34  117.7   0.0    1.1e-33  117.2   0.0    1.2  1  TauD          Taurine catabolism dioxygenase TauD, TfdA famil
      8e-09   35.1   0.0    1.3e-08   34.4   0.0    1.3  1  Aldo_ket_red  Aldo/keto reductase family


Domain annotation for each model (and alignments):
>> TauD  Taurine catabolism dioxygenase TauD, TfdA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  117.2   0.0   1.2e-37   1.1e-33      12     265 ..      72     365 ..      62     368 .. 0.81

  Alignments for each domain:
  == domain 1  score: 117.2 bits;  conditional E-value: 1.2e-37
        TauD  12 e..gvdlsdleslddelkeelrellaeygvvvfrgfpl..speqqlefarrfG...plygtpgrgtntkygevldvssvyesadianlayttllwHtDl 103
                 e  + +l++   ++++++ +l +l+++y +v++rgf+   ++ ++++fa+ +       g    ++    ++v++  ++++ +++++       +H+++
  KOO22474.1  72 EamTASLAE---WSAAHRGALLALIEKYDAVLLRGFGGsaTAMDFSRFASNLElgpFAMGCSAAPRTNVAPGVFTA-NEAPPSEPIP-------FHHEM 159
                 334777777...56666*******************7668***********9555767777777788888999995.5578888888.......8**** PP

        TauD 104 sylesppgiqlLhcleapatGGetpfvDgraaynaLpeelpellegltavrvyyhyrg......................................... 161
                 +   +pp +++++c++++a+GG+tp+  ++a++++L++++ +  ++l+   v y +                                           
  KOO22474.1 160 AQCIEPPAYVFFFCERPAASGGATPIIPSFAVAEHLQAHHSAVADRLRRLGVRYVRTLpehndpssplgkgwrasymansreeaeaameaagieytwld 258
                 **************************************9999996666665555555555688***************************999999999 PP

        TauD 162 ..gglrteqelpavdkhprtghpvvrthp..vltgrkallvnppfatrieglgtpeskelldaleelled.peftyrfqwqeGdlvifdNrrvlHgrta 255
                   +  + + + pa   h+ tg+ ++++     ++g+  +++  p ++ + g+gt+  +e+ +ale++ +   +++++f+wq+Gd++++dNr  lH+r +
  KOO22474.1 259 ggDVRTVTPRMPALVHHDATGREMFFNAVvaATQGWIDVRND-PAKAVVYGDGTALDAEARAALESVGAYlRDHCVAFPWQAGDVLLLDNRKALHSRQS 356
                 977777777889999999999999999996544566666665.6666667****666666666666544435*************************** PP

        TauD 256 fdegeeRhll 265
                 + eg++R l 
  KOO22474.1 357 Y-EGPRRVLA 365
                 *.99777765 PP

>> Aldo_ket_red  Aldo/keto reductase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.4   0.0   1.5e-12   1.3e-08       2     106 ..     417     510 .]     416     510 .] 0.86

  Alignments for each domain:
  == domain 1  score: 34.4 bits;  conditional E-value: 1.5e-12
                   EEEE-SSS-ST.TS-HHHHHHHHHHHHHTT--EEE--TT-TTTHHHHH.HHHHHHH-TTTGGG-EEEEEE--SSSTTSSSS-HHHHHHHHHHHHHHH CS
  Aldo_ket_red   2 lglGtwqlgskeeiskeealellrraleaGinffDtAevYgkgqseel.lGealkksrkkreeviiatKvdlrdaeiksglskeniresleeslkrL 97 
                   +glG+w      +++k+  ++++  a+ aG++++D+A  Yg+     + + +a+++  + r+e+ +++K+      ++ ++  e+++++++++l  L
    KOO22474.1 417 IGLGLW------KVPKDVCADTVVCAIRAGYRHLDSACDYGNEVQVGEgIRRAMAEGLVTRDELWVTSKL------WNTYHAVEHVEAACRKTLADL 501
                   788888......67889999********************443333333555666699************......********************* PP

                   T-S-EEEEE CS
  Aldo_ket_red  98 gtdyvDlll 106
                   g+dyvDl+l
    KOO22474.1 502 GLDYVDLYL 510
                   *******96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (510 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       383  (0.021362); expected 358.6 (0.02)
Passed bias filter:                      349  (0.0194657); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.50u 0.23s 00:00:00.73 Elapsed: 00:00:00.38
# Mc/sec: 3976.05
//
Query:       KOO22475.1  [L=268]
Description: hypothetical protein Ctob_001452 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (268 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       746  (0.0416086); expected 358.6 (0.02)
Passed bias filter:                      409  (0.0228122); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.42u 0.25s 00:00:00.67 Elapsed: 00:00:00.38
# Mc/sec: 2137.43
//
Query:       KOO22476.1  [L=2571]
Description: ATP-binding cassette sub-family a member 3 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.4e-44  151.4  26.0    1.8e-27   96.4   1.9    3.3  3  ABC2_membrane_3  ABC-2 family transporter protein
    3.6e-44  150.6   0.0    7.9e-21   75.0   0.0    2.4  2  ABC_tran         ABC transporter
    1.9e-20   73.9   0.1    2.3e-08   34.2   0.0    4.3  4  AAA_21           AAA domain, putative AbiEii toxin, Type IV T
    5.8e-15   55.6   0.2    1.5e-14   54.3   0.2    1.7  1  SRCR             Scavenger receptor cysteine-rich domain
    0.00011   21.7   0.0       0.41   10.0   0.0    3.4  3  SMC_N            RecF/RecN/SMC N terminal domain
    0.00036   21.1   0.3       0.21   12.0   0.0    2.2  2  AAA_23           AAA domain
     0.0049   17.1   0.0         13    6.0   0.0    4.0  2  SbcCD_C          Putative exonuclease SbcCD, C subunit
     0.0084   16.8   0.0          5    7.9   0.0    2.6  2  DUF4162          Domain of unknown function (DUF4162)
  ------ inclusion threshold ------
      0.023   14.4   0.1        1.5    8.5   0.0    2.7  2  AAA_30           AAA domain
      0.049   13.2   0.1        1.4    8.4   0.0    2.3  2  AAA_27           AAA domain
       0.16   11.6   0.2         20    4.7   0.0    2.2  2  SRP54            SRP54-type protein, GTPase domain
       0.36   10.5   0.7        1.7    8.3   0.0    2.0  2  AAA_15           AAA ATPase domain
       0.36   10.6   1.5        4.9    6.9   0.1    2.6  3  MukB             MukB N-terminal
        4.3    7.2   5.4        8.6    6.2   0.1    3.1  3  AAA_29           P-loop containing region of AAA domain


Domain annotation for each model (and alignments):
>> ABC2_membrane_3  ABC-2 family transporter protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.0   0.0     0.071        90       3      37 ..      22      56 ..      19      76 .. 0.82
   2 !   57.8  15.1   7.6e-19   9.8e-16     149     345 .]     540     750 ..     454     750 .. 0.77
   3 !   96.4   1.9   1.4e-30   1.8e-27     135     317 ..    1825    2018 ..    1762    2063 .. 0.76

  Alignments for each domain:
  == domain 1  score: 2.0 bits;  conditional E-value: 0.071
  ABC2_membrane_3  3 fliitlllPiilvlllglifsnsve.ddentpiavv 37
                     +l +++++P +l+ +l+l+fs+s++ +     +av+
       KOO22476.1 22 TL-CQIFSPPLLASILVLAFSYSSKqEFGAATYAVL 56
                     55.*******************99977777777776 PP

  == domain 2  score: 57.8 bits;  conditional E-value: 7.6e-19
  ABC2_membrane_3 149 stql.eeelsnvasflvgliliilifitasfiavsiveEkesrikelqlvsgvsplqywlskilgdflvyllqlllilllafglgipfgnlgll 241
                      ++++ +++   +  fl+gl+l +++++++++++ +iveEke r+k+ + ++g++ +++++s+ l  +l  ++ + + l l++  +i   nlgll
       KOO22476.1 540 TLAYaQNDFYLAIGFLLGLVLTMCFLLPVAQFTKAIVEEKELRLKQTMRMMGLRESSFVTSWCLLGLLD-ATLITISLTLMLRQFIVHANLGLL 632
                      333234444444668999********************************************9765555.5555555555555466666***** PP

  ABC2_membrane_3 242 lllfllfglayialgyllsslfknsetaqilifivilllsgffgglfpledlp.salkwifsiiPffapglgllrlitgdplwe.......... 324
                      + ++ lf+l + al++lls++f+n + a +++++v++ + +  +++f  ++++ s++k+++s++  +a++ g   l+ ++  +e          
       KOO22476.1 633 VAYVGLFSLGSFALSLLLSTFFSNGKLAAVAAPVVFIGTVLPKYIFFGSNSFEqSSAKVLTSLLLPSAFAFGADILAEYE-HAErsvtiepstr 725
                      *****************************9999999944554444455777777999****************7777444.4445666666667 PP

  ABC2_membrane_3 325 ....illsliilalfavvylllall 345
                          +++ l+++al++++y+ll+l+
       KOO22476.1 726 dsytFGTCLGMMALDCLLYFLLFLY 750
                      777699****************986 PP

  == domain 3  score: 96.4 bits;  conditional E-value: 1.4e-30
  ABC2_membrane_3  135 qseatstsaninvestqleeelsnvasflvgliliilifitasfiavsiveEkesrikelqlvsgvsplqywlskilgdflvyllqlllill 226 
                        +++++ + +++++ tq e   + +  +l++l+++i++ ++++++av++v+E+  ++k+lqlvsg  p+ ywl+++l+d++++ +++  ++l
       KOO22476.1 1825 EESYAVYNHPLPLTGTQ-ELTIKLILATLAALFVLIPFCYIPASAAVFVVKERAVKAKHLQLVSGAGPAVYWLASYLWDLTLFTFTASCCML 1915
                       34444455555555544.55557788889999999999999999*****************************************9999988 PP

  ABC2_membrane_3  227 .l.afgl..gipfg.nlglllllfllfglayialgyllsslfknsetaqilifivil.llsgffgglfp......ledlpsalkwifsiiPf 306 
                        + ++g    +  + + +++ l++l +g ++++++y +s+lf +++taqi++++++l + ++++++ f+       +d++  l  + +++P+
       KOO22476.1 1916 vFfCYGEpgYVGNSdQALATYLVLLGYGASVLPMIYCFSFLFESHSTAQIATLMLNLaTGFAAVIAHFImsridkAQDIDQRLLLVYRMFPT 2007
                       534888787555555778888************************************43344444447734545555555999********* PP

  ABC2_membrane_3  307 fapglgllrli 317 
                       + +g++ll l 
       KOO22476.1 2008 YVVGEALLGLT 2018
                       ******98876 PP

>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   73.4   0.0   1.9e-23   2.5e-20       2     136 ..     839     981 ..     838     982 .. 0.88
   2 !   75.0   0.0   6.2e-24   7.9e-21       3     136 ..    2252    2393 ..    2250    2394 .. 0.92

  Alignments for each domain:
  == domain 1  score: 73.4 bits;  conditional E-value: 1.9e-23
                 EEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGGB-HHHCCHCEEEE-SS--S-TTSBHHHH.............HHHTCHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.............xxxxxxxx RF
    ABC_tran   2 knvslklkegekvaivGenGaGKStLlkllagllkpteGeilldgkdlkeqeleslrkeigvlpqepqlfpeltvren.............esdeeiek 87 
                 +++sl++   +++ ++G+nGaGK++ l++l+gl+   +G+  + g+++++ +++++ + +gv+pq++ ++peltv e+             e+++ + +
  KOO22476.1 839 DDLSLSMASEQITCVLGHNGAGKTSTLSVLCGLYPASSGDCIVFGHSIST-SRRQVYQCLGVCPQHDVIWPELTVLEHlhlyaelkglkpaEARKAALE 936
                 899**************************************9********.9999999************************99999754444444555 PP

                 HHHHSTTGGTTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  88 alsklglkelkdtvvksspssLSgGqkqrvalarallkkpkllllDEpt 136
                 +++ +gl      +v+ + + LSgG+k+++++ +al+  ++ +llDEp+
  KOO22476.1 937 VADDVGLGA----KVHARSRALSGGMKRKLSVGCALIGGSTAVLLDEPS 981
                 555555555....666677*****************************7 PP

  == domain 2  score: 75.0 bits;  conditional E-value: 6.2e-24
                  EEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGGB-HHHCCHCEEEE-SS--S-TTSBHHHH.............HHHTC.. CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.............xxxxx.. RF
    ABC_tran    3 nvslklkegekvaivGenGaGKStLlkllagllkpteGeilldgkdlkeqeleslrkeigvlpqepqlfpeltvren.............esdee.. 84  
                  ++s+ + + e+ +++G nGaGK++ +++l+g   p +Ge ++ g ++ + ele++r++ig++pq + l + +t re+             e      
  KOO22476.1 2252 DLSFAVGHHECFGLLGANGAGKTSTMAMLTGDILPSSGEARICGYNVVR-ELEQVRQRIGYCPQFDPLLELMTGRETlwmfarlkripahE---Agp 2344
                  799********************************************99.9***************************8887777665433...156 PP

                  .HHHHHHHSTTGGTTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTT CS
                  .xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran   85 .iekalsklglkelkdtvvksspssLSgGqkqrvalarallkkpkllllDEpt 136 
                   i+++l++++l+  +d++       +SgG k++++la al+ +p++++lDEp+
  KOO22476.1 2345 lITQLLQQVSLTPHADKPS----GAYSGGNKRKLSLAVALIGAPPVVFLDEPS 2393
                  6************888888....*****************************7 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.7   0.0     0.017        22       1      19 [.     850     868 ..     850     892 .. 0.85
   2 !   25.3   0.0   9.3e-09   1.2e-05     235     297 ..     952    1010 ..     933    1014 .. 0.87
   3 ?    3.9   0.1      0.03        38       3      16 ..    2264    2277 ..    2262    2291 .. 0.86
   4 !   34.2   0.0   1.8e-11   2.3e-08     235     300 ..    2364    2425 ..    2313    2428 .. 0.85

  Alignments for each domain:
  == domain 1  score: 4.7 bits;  conditional E-value: 0.017
      AAA_21   1 lnvliGpNgsGKSnLLdal 19 
                 ++++ G Ng+GK++ L  l
  KOO22476.1 850 ITCVLGHNGAGKTSTLSVL 868
                 799************9988 PP

  == domain 2  score: 25.3 bits;  conditional E-value: 9.3e-09
      AAA_21  235 relSdGtkrllalltallralkkgsllliDEpEngLHPkllrrllellkelsrngaQviltTH 297 
                  r lS G+kr l +  al+   ++ + +l+DEp +g++P + r+ +ell ++++ g  ++ltTH
  KOO22476.1  952 RALSGGMKRKLSVGCALIG--GS-TAVLLDEPSSGMDPGARRSMWELLQRNKK-GRALVLTTH 1010
                  6789*****9666666665..55.99**********************99988.9******** PP

  == domain 3  score: 3.9 bits;  conditional E-value: 0.03
      AAA_21    3 vliGpNgsGKSnLL 16  
                  +l G+Ng+GK++ +
  KOO22476.1 2264 GLLGANGAGKTSTM 2277
                  799********976 PP

  == domain 4  score: 34.2 bits;  conditional E-value: 1.8e-11
      AAA_21  235 relSdGtkrllalltallralkkgsllliDEpEngLHPkllrrllellkelsrngaQviltTHSpl 300 
                     S G kr l l++al+ a+   +++++DEp +g++P + rr +++l ++++    +ilt+HS +
  KOO22476.1 2364 GAYSGGNKRKLSLAVALIGAP---PVVFLDEPSSGMDPVARRRMWDVLTRERQ-HRAIILTSHSME 2425
                  44599****************...************************99988.899*******75 PP

>> SRCR  Scavenger receptor cysteine-rich domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.3   0.2   1.2e-17   1.5e-14       6      99 ..     107     217 ..     103     218 .. 0.78

  Alignments for each domain:
  == domain 1  score: 54.3 bits;  conditional E-value: 1.2e-17
        SRCR   6 eceGrvEvklngswgtvcddgwdleeaevvCrqLgyggavaasssase...lgagkkgrillsevrCsgneasLsqCkaeklgesa............c 89 
                    Gr+E+ ++g+wgt c+++++l++a v+C q+g++  v   s +++    ++ ++g+i+ls ++C+g+e+ Ls+C +++ ++ +            c
  KOO22476.1 107 VYDGRLEIFHAGEWGTFCTRSFGLNDAWVACGQMGLEPYVVDRSDCRFglkAERRGSGKIWLSHMKCYGDEDMLSECGSTQGDPFSgsrgglvwgapdC 205
                 578*****99**************************99998889999988766667899******************7755433222334555555555 PP

        SRCR  90 ..sheedagvtC 99 
                   +h+ed+g++C
  KOO22476.1 206 qeDHSEDLGISC 217
                 444555666666 PP

>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.6   0.0    0.0036       4.7      23      41 ..     847     865 ..     839     871 .. 0.85
   2 ?   -3.2   0.0       3.6   4.7e+03     157     197 ..     970    1010 ..     948    1023 .. 0.71
   3 !   10.0   0.0   0.00032      0.41     135     212 ..    2345    2437 ..    1648    2442 .. 0.70

  Alignments for each domain:
  == domain 1  score: 6.6 bits;  conditional E-value: 0.0036
                 TSSEEEEEESTTSSHHHHH CS
                 xxxxxxxxxxxxxxxxxxx RF
       SMC_N  23 sksftaivGpNGSGKsnll 41 
                 s+++t+++G+NG+GK++ l
  KOO22476.1 847 SEQITCVLGHNGAGKTSTL 865
                 7899************976 PP

  == domain 2  score: -3.2 bits;  conditional E-value: 3.6
                  S--SEEEECTTTTTS-HHHHHHHHHHHHHHCTTSEEEEE-S CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N  157 kpaplyllDeidaaLDeknvkkvaellkeksknaQfivisl 197 
                    +  +llDe  + +D   ++ + ell++++k   ++ +++
  KOO22476.1  970 GGSTAVLLDEPSSGMDPGARRSMWELLQRNKKGRALVLTTH 1010
                  45566799999999999999999999999887766666665 PP

  == domain 3  score: 10.0 bits;  conditional E-value: 0.00032
                  T...................CS-HHHHHHHHHHHHHHHHCCS--SEEEECTTTTTS-HHHHHHHHHHHHHHCTTSEEEEE-SSHHHCCC-SCEEEEE CS
                  x...................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N  135 e...................lLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvkkvaellkeksknaQfivislreemlekadklvgvt 212 
                                      + SgG+k  ++l    A+  +   p+++lDe  + +D   ++++ ++l +++++  +i +s++ e +e   + +g++
  KOO22476.1 2345 LitqllqqvsltphadkpsgAYSGGNKRKLSL----AVALIGAPPVVFLDEPSSGMDPVARRRMWDVLTRERQHRAIILTSHSMEECEALCTRIGIM 2437
                  05555555555555666666789999975544....44567888999***********************************999888877777665 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.0   0.0   0.00017      0.21      18      40 ..     847     869 ..     829     872 .. 0.78
   2 !    6.8   0.1    0.0065       8.3      18      39 ..    2259    2280 ..    2251    2282 .. 0.79

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 0.00017
      AAA_23  18 skgltlItGpNGaGKTTildAik 40 
                 s  +t++ G+NGaGKT+ l  ++
  KOO22476.1 847 SEQITCVLGHNGAGKTSTLSVLC 869
                 789**************997776 PP

  == domain 2  score: 6.8 bits;  conditional E-value: 0.0065
      AAA_23   18 skgltlItGpNGaGKTTildAi 39  
                  ++  + + G NGaGKT+ +  +
  KOO22476.1 2259 HHECFGLLGANGAGKTSTMAML 2280
                  6778999**********98766 PP

>> SbcCD_C  Putative exonuclease SbcCD, C subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.4   0.0     0.016        21      65      89 ..     973     997 ..     929     998 .. 0.69
   2 ?    6.0   0.0     0.011        13      64      89 ..    2384    2409 ..    2356    2410 .. 0.81

  Alignments for each domain:
  == domain 1  score: 5.4 bits;  conditional E-value: 0.016
     SbcCD_C  65 rlvfLDEAFsklDeesiatllelle 89 
                   v+LDE  s++D+  ++++ ell+
  KOO22476.1 973 TAVLLDEPSSGMDPGARRSMWELLQ 997
                 46999***********999999986 PP

  == domain 2  score: 6.0 bits;  conditional E-value: 0.011
     SbcCD_C   64 lrlvfLDEAFsklDeesiatllelle 89  
                  + +vfLDE  s++D+  ++++ ++l+
  KOO22476.1 2384 PPVVFLDEPSSGMDPVARRRMWDVLT 2409
                  5689*****************99986 PP

>> DUF4162  Domain of unknown function (DUF4162)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.1   0.0     0.014        18      22      80 ..    1065    1129 ..    1041    1130 .. 0.72
   2 !    7.9   0.0    0.0039         5      28      80 ..    2506    2562 ..    2489    2563 .. 0.77

  Alignments for each domain:
  == domain 1  score: 6.1 bits;  conditional E-value: 0.014
                  ----..--.-EEEE-TTS-EEEEE-.-.---------------E...EEEEEEE---HHHHHHHH CS
     DUF4162   22 eelleepg.veeveeeggelelkle.d.eeaanellkaltsgve...irsFeeeePsLndIFiek 80  
                   +l++  + +e ++e+g+el+++l+ d   +  +ll++l++ +e   +r     + sL+++Fie+
  KOO22476.1 1065 RKLQSFVSrIELLSEAGDELSFRLPlDaAPQFAALLRYLDAAAEelgLRGHGMSISSLEEVFIEL 1129
                  34444444455558888898888885436666799999955555566****************97 PP

  == domain 2  score: 7.9 bits;  conditional E-value: 0.0039
                  ---EEEE-TTS-EEEEE--.-----------.----E..EEEEEEE---HHHHHHHH CS
     DUF4162   28 pgveeveeeggelelkled.eeaanellkal.tsgve..irsFeeeePsLndIFiek 80  
                  pg ++ + + + +++++++  +  +e+++al ++++   i+ ++  +P L++IF+ +
  KOO22476.1 2506 PGAKVADYHRQVIKFRIPSdRHGFPEVFEALeKNKAAlgIQDYACSQPRLEEIFLSV 2562
                  667777777788999999768899*******75666677***************987 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.5   0.0    0.0012       1.5      17      55 ..     847     885 ..     841    1007 .. 0.85
   2 ?    2.8   0.0     0.067        86      19      39 ..    2261    2281 ..    2253    2299 .. 0.77

  Alignments for each domain:
  == domain 1  score: 8.5 bits;  conditional E-value: 0.0012
      AAA_30  17 gdrvavltGpAGtGKttalkalreaweaaggrviglApt 55 
                 +++++++ G  G+GKt +l++l  ++ a+ g+ i++ ++
  KOO22476.1 847 SEQITCVLGHNGAGKTSTLSVLCGLYPASSGDCIVFGHS 885
                 4469*********************99997666666555 PP

  == domain 2  score: 2.8 bits;  conditional E-value: 0.067
      AAA_30   19 rvavltGpAGtGKttalkalr 39  
                   +  l G+ G+GKt +++ l+
  KOO22476.1 2261 ECFGLLGANGAGKTSTMAMLT 2281
                  566789***********9885 PP

>> AAA_27  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.4   0.0    0.0011       1.4      15      46 ..     837     868 ..     826     874 .. 0.83
   2 ?    2.1   0.0     0.097   1.2e+02      19      46 ..    2253    2280 ..    2248    2285 .. 0.79

  Alignments for each domain:
  == domain 1  score: 8.4 bits;  conditional E-value: 0.0011
      AAA_27  15 tdrsldfsaeeadlhliyGpNEAGKstalrAi 46 
                 +   l++s ++++++ ++G N AGK+++l+ +
  KOO22476.1 837 AVDDLSLSMASEQITCVLGHNGAGKTSTLSVL 868
                 5567888889******************9865 PP

  == domain 2  score: 2.1 bits;  conditional E-value: 0.097
      AAA_27   19 ldfsaeeadlhliyGpNEAGKstalrAi 46  
                  l+f  ++++   ++G+N AGK+++++ +
  KOO22476.1 2253 LSFAVGHHECFGLLGANGAGKTSTMAML 2280
                  66666666666789*********99765 PP

>> SRP54  SRP54-type protein, GTPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.5   0.0     0.018        23       3      26 ..     850     873 ..     848     884 .. 0.81
   2 ?    4.7   0.0     0.016        20       6      22 ..    2265    2281 ..    2261    2301 .. 0.85

  Alignments for each domain:
  == domain 1  score: 4.5 bits;  conditional E-value: 0.018
                 EEEEEESTTSSHHHHHHHHHHHHH CS
       SRP54   3 villvGlqGaGKTttlaKLaallk 26 
                 ++ ++G +GaGKT+tl+ L  l+ 
  KOO22476.1 850 ITCVLGHNGAGKTSTLSVLCGLYP 873
                 67799***********98877665 PP

  == domain 2  score: 4.7 bits;  conditional E-value: 0.016
                  EEESTTSSHHHHHHHHH CS
       SRP54    6 lvGlqGaGKTttlaKLa 22  
                  l+G +GaGKT+t+a L 
  KOO22476.1 2265 LLGANGAGKTSTMAMLT 2281
                  79************986 PP

>> AAA_15  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.3   0.0    0.0013       1.7      22      43 ..     847     868 ..     837     872 .. 0.84
   2 ?   -0.1   0.2      0.45   5.8e+02      28      43 ..    2265    2280 ..    2263    2282 .. 0.89

  Alignments for each domain:
  == domain 1  score: 8.3 bits;  conditional E-value: 0.0013
      AAA_15  22 seeltvliGkNnsGKSsileal 43 
                 se++t++ G+N++GK+s l +l
  KOO22476.1 847 SEQITCVLGHNGAGKTSTLSVL 868
                 455***************9987 PP

  == domain 2  score: -0.1 bits;  conditional E-value: 0.45
      AAA_15   28 liGkNnsGKSsileal 43  
                  l G+N++GK+s + +l
  KOO22476.1 2265 LLGANGAGKTSTMAML 2280
                  56*********99887 PP

>> MukB  MukB N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.7   0.1      0.14   1.8e+02      26      45 ..     848     867 ..     844     876 .. 0.81
   2 ?   -3.2   0.0       4.7   6.1e+03      32      57 ..    1286    1311 ..    1285    1316 .. 0.84
   3 ?    6.9   0.1    0.0038       4.9      31      53 ..    2265    2287 ..    2255    2294 .. 0.87

  Alignments for each domain:
  == domain 1  score: 1.7 bits;  conditional E-value: 0.14
                 HHHHHHHS--SHHHHHHHHH CS
        MukB  26 elvttlsGgnGaGksttmaa 45 
                 e +t++ G nGaGk+ t+  
  KOO22476.1 848 EQITCVLGHNGAGKTSTLSV 867
                 678999********999764 PP

  == domain 2  score: -3.2 bits;  conditional E-value: 4.7
                  HS--SHHHHHHHHHHHHHHS--TTT- CS
        MukB   32 sGgnGaGksttmaafvtaliPdlsll 57  
                  +G+ G+Gk ++++a v+a +  l l+
  KOO22476.1 1286 KGASGSGKFAVLVADVVAWLKTLRLM 1311
                  5999************9998777665 PP

  == domain 3  score: 6.9 bits;  conditional E-value: 0.0038
                  HHS--SHHHHHHHHHHHHHHS-- CS
        MukB   31 lsGgnGaGksttmaafvtaliPd 53  
                  l G+nGaGk+ tma +   ++P 
  KOO22476.1 2265 LLGANGAGKTSTMAMLTGDILPS 2287
                  78************999888885 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.2   0.1    0.0067       8.6      16      39 ..     842     865 ..     837     877 .. 0.74
   2 ?   -2.2   0.3       2.8   3.5e+03      29      37 ..    1287    1295 ..    1283    1300 .. 0.84
   3 ?    2.0   0.1      0.14   1.7e+02      25      39 ..    2263    2277 ..    2252    2284 .. 0.78

  Alignments for each domain:
  == domain 1  score: 6.2 bits;  conditional E-value: 0.0067
      AAA_29  16 tieidlkgatlltGpsGsGKSTll 39 
                 ++++  +++t + G++G+GK++ l
  KOO22476.1 842 SLSMASEQITCVLGHNGAGKTSTL 865
                 456666669***********8766 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 2.8
      AAA_29   29 GpsGsGKST 37  
                  G+sGsGK +
  KOO22476.1 1287 GASGSGKFA 1295
                  99*****65 PP

  == domain 3  score: 2.0 bits;  conditional E-value: 0.14
      AAA_29   25 tlltGpsGsGKSTll 39  
                  + l G++G+GK++ +
  KOO22476.1 2263 FGLLGANGAGKTSTM 2277
                  5589*******8766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (2571 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       689  (0.0384294); expected 358.6 (0.02)
Passed bias filter:                      445  (0.0248201); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                        14  (0.000780858); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              14  [number of targets reported over threshold]
# CPU time: 1.22u 0.31s 00:00:01.53 Elapsed: 00:00:00.45
# Mc/sec: 17100.24
//
Query:       KOO22477.1  [L=369]
Description: hypothetical protein Ctob_001450 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
  ------ inclusion threshold ------
       0.11   12.9   1.2       0.48   10.8   0.3    2.2  2  DAGK_acc      Diacylglycerol kinase accessory domain
        5.4    6.5   8.6        6.8    6.2   8.6    1.3  1  Cas_DxTHG     CRISPR-associated (Cas) DxTHG family


Domain annotation for each model (and alignments):
>> DAGK_acc  Diacylglycerol kinase accessory domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.3   5.3e-05      0.48     110     156 ..     179     223 ..     145     225 .. 0.78
   2 ?    0.1   0.0       0.1     9e+02     102     147 ..     245     290 ..     231     298 .. 0.73

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 5.3e-05
    DAGK_acc 110 dDgllEvvglesvlhlgqlqvglkkakrlaqaseikielkkklpvqv 156
                   ++lEv+   + +++ +l+++l++a+r aqa+++++el++++  q+
  KOO22477.1 179 LEEKLEVTLSAKNAQIDALRLELNQATRSAQAETLRLELSQTT--QI 223
                 3568***********************************9974..44 PP

  == domain 2  score: 0.1 bits;  conditional E-value: 0.1
    DAGK_acc 102 lkfekqsvdDgllEvvglesvlhlgqlqvglkkakrlaqaseikie 147
                 +    q ++D   Ev +++ +++ + + +  + +  l  a+e  ++
  KOO22477.1 245 EARVVQVMEDAAYEVASMRALVDAAHSDARESVKLGLLEAQEAALR 290
                 5567789999999999999999998888777766666666666555 PP

>> Cas_DxTHG  CRISPR-associated (Cas) DxTHG family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.2   8.6   0.00076       6.8     208     343 ..      18     171 ..       3     278 .. 0.71

  Alignments for each domain:
  == domain 1  score: 6.2 bits;  conditional E-value: 0.00076
   Cas_DxTHG 208 klkeklkkeleefskalelirp.lell.ekaekleke...iveklkeeleei.esleeeesakplel...lldeikkklekf...............lk 282
                 + kek ++++++      + r+ le +  +a+++ ++   ++++ ++ l++  ++l+++  +++l +   +l++i++++ ++               l+
  KOO22477.1  18 EAKEKAEELVRQAQAEAAARRGdLEKVqSSAQSALEQqnkFLKQSEDALTRTqQKLKRADGTRSLLKkrdELMRIQEAIHRLqamdmvprlepapelLQ 116
                 333333333333333333333355555444444444433333333344444444444444444444456689999999999988888888887777655 PP

   Cas_DxTHG 283 kqikwclekgliqqaltllreliislllegedilnkkkrreeieeelknlskvekksseek 343
                 k+++++ +   iqq +++   ++      +e   ++k++ +e +e+++  ++ +k+ +++ 
  KOO22477.1 117 KRAELQRMQAAIQQQVEMRATTL------EEAKEEYKRKGQETREAIEGQKNQIKELQQRA 171
                 55888888899999998888888......88889999999999999988888888877764 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (369 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2868  (0.159964); expected 358.6 (0.02)
Passed bias filter:                      628  (0.0350271); expected 358.6 (0.02)
Passed Vit filter:                        87  (0.00485247); expected 17.9 (0.001)
Passed Fwd filter:                        36  (0.00200792); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.97u 0.35s 00:00:01.31 Elapsed: 00:00:00.52
# Mc/sec: 2139.89
//
Query:       KOO22478.1  [L=157]
Description: hypothetical protein Ctob_001451 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
       0.29   11.2  12.3       0.26   11.4  11.5    1.4  1  ATP-synt_B  ATP synthase B/B' CF(0)


Domain annotation for each model (and alignments):
>> ATP-synt_B  ATP synthase B/B' CF(0)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4  11.5   1.5e-05      0.26      43     125 ..      43     125 ..      30     130 .. 0.93

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 1.5e-05
  ATP-synt_B  43 eerrkeaaallaeaeqqlkeAraeAaeiiknAkkeaeklkeeieaeaeaeaerlkesAaaeIeqekdralaeLreqvvalavq 125
                 e   k+a+++++++e+q  eA    ++  k+A  + +k+  e+eae ++ +  +  ++ a+I+ +k+ ++ae +e vv++a +
  KOO22478.1  43 ESPEKKAKEAKEDQEKQETEAPVSTDTDLKDADINEAKEGVEAEAEPKEPVVEQAPAKDADINEAKEGVEAEPKEPVVEQATA 125
                 555789999***********************************************************************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (157 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1674  (0.0933683); expected 358.6 (0.02)
Passed bias filter:                      583  (0.0325172); expected 358.6 (0.02)
Passed Vit filter:                        85  (0.00474092); expected 17.9 (0.001)
Passed Fwd filter:                        18  (0.00100396); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.56u 0.29s 00:00:00.85 Elapsed: 00:00:00.42
# Mc/sec: 1109.26
//
Query:       KOO22479.1  [L=506]
Description: hypothetical protein Ctob_001454 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.032   14.7   3.2      0.032   14.7   3.2    6.2  5  DUF4140   N-terminal domain of unknown function (DUF4140)
      0.036   14.5   0.2       0.17   12.3   0.2    2.3  1  HsbA      Hydrophobic surface binding protein A


Domain annotation for each model (and alignments):
>> DUF4140  N-terminal domain of unknown function (DUF4140)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.7   3.2   3.6e-06     0.032      28      96 ..      36     106 ..      33     108 .. 0.89
   2 ?    0.7   7.3     0.082   7.3e+02      53      96 ..     137     181 ..     115     183 .. 0.55
   3 ?  -13.2  21.1         2   1.8e+04      57      82 ..     231     257 ..     171     273 .. 0.55
   4 ?   -3.4   6.2       1.6   1.4e+04      59      85 ..     340     365 ..     273     378 .. 0.61
   5 ?   -3.2   0.4       1.4   1.2e+04      67      89 ..     436     458 ..     406     465 .. 0.50

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 3.6e-06
     DUF4140  28 egLpptldedSlrVegagaatildvqver..vpnreaeeeelkalraeleeledelaaledelaaaearla 96 
                 + L p++d + +r e++ a+   +++ e+  ++ r+ ++e+l++lrae+++  ++l+al+de++++ a+la
  KOO22479.1  36 QALYPQADRELVRLESEHAISMMELRHEQeiTALRQDAREQLRRLRAEVRRRDKALTALTDERDTLAAQLA 106
                 67889**************9999999998656666777768***************************997 PP

  == domain 2  score: 0.7 bits;  conditional E-value: 0.082
     DUF4140  53 qvervpnreaeeeelkalraele.eledelaaledelaaaearla 96 
                 +++ + +r + e++++alr++le ++ +e+a+le++++++++rl+
  KOO22479.1 137 RLQAEHERASLEQSMQALRERLElAAATERANLEQSMQVLRERLE 181
                 223333333333346666666663444566666666666666665 PP

  == domain 3  score: -13.2 bits;  conditional E-value: 2
     DUF4140  57 vpnreaeeee.lkalraeleeledela 82 
                  + r +e+e+  ++lr+ele+++ + a
  KOO22479.1 231 ATARATESERtAAELRKELEAAHLAHA 257
                 222333333335555555555554444 PP

  == domain 4  score: -3.4 bits;  conditional E-value: 1.6
     DUF4140  59 nreaeeeelkalraeleeledelaale 85 
                  r+a + e ++l+a++++  +e++++ 
  KOO22479.1 340 ARRASR-EAAELTAAVRQELQEQRRAV 365
                 111222.24455555544444444444 PP

  == domain 5  score: -3.2 bits;  conditional E-value: 1.4
     DUF4140  67 lkalraeleeledelaaledela 89 
                 l + r++l +l++++ + + +++
  KOO22479.1 436 LLSQRRRLLKLQTRRCQTDHAQQ 458
                 44445555555555555544444 PP

>> HsbA  Hydrophobic surface binding protein A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.2   1.9e-05      0.17      60     112 ..     313     366 ..     280     367 .. 0.91

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 1.9e-05
                 HHHHHHHHHHHH.HCHHHHHHHHHHHHHTHHHHHHHT-HHHHHHHHHHHHHHHH CS
        HsbA  60 deealalaqavq.tLepdvkaaldaliaKkpafdkagltslvlssLqdlkaasd 112
                 ++ +++++ a++ t  ++  aa+dal a+++  ++a lt+ v++ Lq+++ a+d
  KOO22479.1 313 QQRSEEVQMALGlTKWKAGVAAVDALDARRASREAAELTAAVRQELQEQRRAVD 366
                 56778888888888889999******************************9976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (506 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2134  (0.119025); expected 358.6 (0.02)
Passed bias filter:                      470  (0.0262145); expected 358.6 (0.02)
Passed Vit filter:                        97  (0.00541023); expected 17.9 (0.001)
Passed Fwd filter:                        28  (0.00156172); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 1.09u 0.35s 00:00:01.44 Elapsed: 00:00:00.52
# Mc/sec: 2930.14
//
Query:       KOO22480.1  [L=459]
Description: hypothetical protein Ctob_001455 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (459 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       300  (0.0167327); expected 358.6 (0.02)
Passed bias filter:                      281  (0.0156729); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.47u 0.27s 00:00:00.74 Elapsed: 00:00:00.42
# Mc/sec: 3295.72
//
Query:       KOO22481.1  [L=314]
Description: DNAj-like subfamily b member 13 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.4e-23   82.4   0.0    4.8e-23   81.9   0.0    1.2  1  DnaJ_C    DnaJ C terminal domain
    2.2e-19   69.3   0.0    3.3e-19   68.7   0.0    1.3  1  DnaJ      DnaJ domain


Domain annotation for each model (and alignments):
>> DnaJ_C  DnaJ C terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   81.9   0.0   5.4e-27   4.8e-23       3     148 .]     149     298 ..     147     298 .. 0.91

  Alignments for each domain:
  == domain 1  score: 81.9 bits;  conditional E-value: 5.4e-27
                 EEEEE-HHHHHH-.EEE.EEEE.............TEEEEEE-TT--TT-EEEETT-SSSS...S---EEEEEEE---SS-EEETTEEEEEEEEEHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxx......xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
      DnaJ_C   3 veleisleelykGktkkikikrnvi......kkekktlevkipaGikdgqkirlegeGdeeg.gepGDlivtikvkphpvFkrkgndlyveveislaea 94 
                 ++le++l e+y+G+ k++ ++r+         +e  + e+ +++G ++g   +leg+Gd++  + pGD+ + + v p+p ++r+g++l+++ + sl+ea
  KOO22481.1 149 APLEVTLAEVYNGAVKTVGYTRKLLkedgttMDEAVETELYVKPGSEEGLIATLEGQGDQGVhVLPGDVEIMLVVLPDPLWSREGDNLLYKHTMSLKEA 247
                 689*******************9888888654444479*********************9889**************************9999****** PP

                 HHTEEEEEE-SS-EEEE....EE--TT-EEEETT-S-EET...TEE--EEEEEEEE-- CS
                 xxxxxxxxxxxxxxxxx....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
      DnaJ_C  95 llGgklevptldgkvkl....kitqpgevlrikgkGmpklkkpgkrGdlyvevkvefP 148
                 l+G+ + vpt+dg+       +i+ pg+ l+++g+G+          dl++ ++v+fP
  KOO22481.1 248 LCGKVVPVPTFDGRELAvpatQIVAPGDSLTVPGEGICGA-------DLIICFEVTFP 298
                 ***********888766698999**************887.......89999999998 PP

>> DnaJ  DnaJ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   68.7   0.0   3.7e-23   3.3e-19       2      63 .]       9      71 ..       8      71 .. 0.96

  Alignments for each domain:
  == domain 1  score: 68.7 bits;  conditional E-value: 3.7e-23
                HHHHHTSSTTG-HHHHHHHHHHHHHHHSTTTSCCHH.HHHHHHHHHHHHHHHHTSHHHHHHHH CS
        DnaJ  2 yYeiLgvskdasedeIkkaYrklalkyHPDknpkdp.eaeekFkeineAyevLsdpekRkqYD 63
                yY+ Lgv+++++ +e+ kaYrklalk+HP + +  p eae  F  i+eAy+vLs+p +R++YD
  KOO22481.1  9 YYDSLGVTRTCTPAELNKAYRKLALKFHPQRATIPPdEAEITFTSISEAYDVLSNPARRAIYD 71
                9*******************************777799************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (314 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       263  (0.014669); expected 358.6 (0.02)
Passed bias filter:                      257  (0.0143343); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.43u 0.23s 00:00:00.66 Elapsed: 00:00:00.39
# Mc/sec: 2405.02
//
Query:       KOO22482.1  [L=420]
Description: hypothetical protein Ctob_001439 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
  ------ inclusion threshold ------
      0.011   15.4   7.1       0.29   10.7   6.9    2.4  2  PI3K_P85_iSH2  Phosphatidylinositol 3-kinase regulatory subun
      0.092   12.1  29.0       0.27   10.6  21.3    2.6  2  GAS            Growth-arrest specific micro-tubule binding
       0.32   11.2  55.8      0.035   14.3  15.1    2.7  3  ATG16          Autophagy protein 16 (ATG16)
       0.35   11.2   0.1       0.35   11.2   0.1    6.1  6  ABC_tran_CTD   ABC transporter C-terminal domain
        2.3    8.6   8.9        5.5    7.3   0.9    2.4  2  TruB_N         TruB family pseudouridylate synthase (N termin
        7.4    7.0  32.8         10    6.5  12.5    3.1  3  Fez1           Fez1


Domain annotation for each model (and alignments):
>> PI3K_P85_iSH2  Phosphatidylinositol 3-kinase regulatory subunit P85 inter-SH2 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.4   0.0     0.036   1.1e+02       2      60 ..      70     128 ..      69     130 .. 0.86
   2 ?   10.7   6.9   9.7e-05      0.29      54     141 ..     218     308 ..     183     334 .. 0.77

  Alignments for each domain:
  == domain 1  score: 2.4 bits;  conditional E-value: 0.036
  PI3K_P85_iSH2   2 qedelvkegdleklseklrevskqlqekskeydqlkeeynkiseeiqlkrqaleaFnea 60 
                    q+++  ++g + +l  +l  +  +l   ++  d+  e + + +  + +    l a +ea
     KOO22482.1  70 QQENARHTGTIHALEAQLAALMAELASATQRADRADERCLASEGRVGVLHVELHAMREA 128
                    78899999**************************9999988888777777777776665 PP

  == domain 2  score: 10.7 bits;  conditional E-value: 9.7e-05
  PI3K_P85_iSH2  54 leaFneaikmFeeqiklqekfskea..qehEie.klqenleqlksrlkelhsskekLeedlkqqkeeereleReinalkpellqLqkrkdk 141
                    l+a  e++++ +   +lq+ +s  +   + + + +  e  + ++++  +l++++e L+  l++ ++    leR+ + +  e  +Lqk   +
     KOO22482.1 218 LDARAETEEIRRKASALQAALSAAQlqARMDAQmQAAEATKAAEAQRASLEEAREALQARLEKAVSARAALERRASDAEAEARRLQKCEKQ 308
                    5555667777777777777666555332444444667788888999999999999999999999999999999999999999999986544 PP

>> GAS  Growth-arrest specific micro-tubule binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.9   2.0    0.0049        15      46      83 ..      63     100 ..      35     199 .. 0.67
   2 ?   10.6  21.3     9e-05      0.27      30     171 ..     191     336 ..     187     339 .. 0.87

  Alignments for each domain:
  == domain 1  score: 4.9 bits;  conditional E-value: 0.0049
         GAS  46 ekelseisqenkrlkepLkkaeeeveeLrkqlknyekd 83 
                 +  l +++qen r + +++++e++++ L ++l+   + 
  KOO22482.1  63 QESLVHAQQENARHTGTIHALEAQLAALMAELASATQR 100
                 55566799****************99999988765442 PP

  == domain 2  score: 10.6 bits;  conditional E-value: 9e-05
         GAS  30 slKeeieelkkkeernekelseisqenkrlkepLkkaeeeveeLrkqlknye..kdkqslknlkarlkelekelkdlkwehevleqrfekvekerdely 126
                 +l e +    + +++n + l+++ +   + + + ++ +++   L+++l   +      + +++ +  k +e +  +l++  e l+ r+ek+ ++r +l+
  KOO22482.1 191 ELNERMSAVSALAAENARALEAARTGELDARAETEEIRRKASALQAALSAAQlqARMDAQMQAAEATKAAEAQRASLEEAREALQARLEKAVSARAALE 289
                 67788888889999999*****************************886544104445556666778899999************************** PP

         GAS 127 kkfeaaiqevq..qktglknllLekklkalqeelEkkeaqleevlaa 171
                 ++  +a  e++  qk++ ++  L ++ kalq el kk   le vl++
  KOO22482.1 290 RRASDAEAEARrlQKCEKQAAALDTQCKALQTELAKKADALERVLKR 336
                 ****9988875559******************************986 PP

>> ATG16  Autophagy protein 16 (ATG16)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3  15.1   1.2e-05     0.035      23     168 ..      33     172 ..      27     180 .. 0.88
   2 ?   -3.5  16.6       3.4     1e+04      84     169 ..     158     247 ..     146     255 .. 0.70
   3 ?    0.9  33.4      0.15   4.5e+02      30     156 ..     198     333 ..     174     335 .. 0.62

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 1.2e-05
       ATG16  23 aynrLldrtsaleaenaklekaaasakssksskksakekeasasqsnskqsakiqsleqklaqlreelaelyksrgelaqrllelneelqkleeklked 121
                 a+++ l+r+ +lea + ++ ++ a+ +s        +e++  a+q+n++ + +i++le++la+l +ela + ++     +r l+ +  + +l  +l ++
  KOO22482.1  33 AHRQALERSTSLEAAKTAALARDAHGRS------AVQESLVHAQQENARHTGTIHALEAQLAALMAELASATQRADRADERCLASEGRVGVLHVELHAM 125
                 799999*****99999988666555554......3344555555566677889********************************************** PP

       ATG16 122 eerlaeleaeraaletklkdreeelrekeklvqdlqDElsaLqlqln 168
                 +e+ a+++ + a+ + + ++ + e   ++++  +   El+a q +l+
  KOO22482.1 126 REACARATGDAASARAAADEARTECLTRATAQAAATAELAAVQAALK 172
                 *******************************************9986 PP

  == domain 2  score: -3.5 bits;  conditional E-value: 3.4
       ATG16  84 aqlreelaelyksrgelaqrllelneelqkleeklkedeerlaeleaeraaletklk....dreeelrekeklvqdlqDElsaLqlqlnq 169
                 a+  +ela+++ +   +     ++ ++ ++ +++l+e+ +++ +l ae+a+  ++ +    d ++e +e ++   +lq +lsa qlq+ +
  KOO22482.1 158 AAATAELAAVQAALKATRVAAAKAAAASEAAQAELNERMSAVSALAAENARALEAARtgelDARAETEEIRRKASALQAALSAAQLQARM 247
                 444556666666555555555666677777777888888888888877776555554343477888999999999999999999999987 PP

  == domain 3  score: 0.9 bits;  conditional E-value: 0.15
       ATG16  30 rtsaleaenaklekaaasaks...sksskksakekeasasq.........snskqsakiqsleqklaqlreelaelyksrgelaqrllelneelqklee 116
                  +sal+aena++    ++a++   +++ ++ + +++asa q           ++ + + ++ +++  ++r+ l+e+  + +   ++ +++ ++l+++ +
  KOO22482.1 198 AVSALAAENARA---LEAARTgelDARAETEEIRRKASALQaalsaaqlqARMDAQMQAAEATKAAEAQRASLEEAREALQARLEKAVSARAALERRAS 293
                 334444444444...333333323333232222333333225566665444444455555555555566666666666655556666778899999999 PP

       ATG16 117 klkedeerlaeleaeraaletklkdreeelrekeklvqdl 156
                  ++++++rl++ e++ aal t++k ++ el+ k+ +++ +
  KOO22482.1 294 DAEAEARRLQKCEKQAAALDTQCKALQTELAKKADALERV 333
                 999******************************9998865 PP

>> ABC_tran_CTD  ABC transporter C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.1   0.00012      0.35       7      40 ..      70     101 ..      67     132 .. 0.81
   2 ?    1.9   0.6     0.092   2.7e+02      36      59 ..     150     173 ..     137     176 .. 0.73
   3 ?   -2.1   8.3       1.6   4.9e+03      19      33 ..     184     198 ..     158     228 .. 0.58
   4 ?   -4.0  13.4         6   1.8e+04      26      63 ..     233     270 ..     220     290 .. 0.44
   5 ?    2.8   6.8     0.048   1.4e+02      11      56 ..     272     315 ..     261     317 .. 0.85
   6 ?    8.3   2.3   0.00094       2.8       6      35 ..     298     327 ..     295     338 .. 0.87

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00012
  ABC_tran_CTD   7 qreleeleaeIeaLEeeiaeleaeladpelysdp 40 
                   q+e ++   +I aLE+++a+l aela+++  ++ 
    KOO22482.1  70 QQENARHTGTIHALEAQLAALMAELASAT--QRA 101
                   5566666789****************998..333 PP

  == domain 2  score: 1.9 bits;  conditional E-value: 0.092
  ABC_tran_CTD  36 lysdpeklaelsaeleeleaeLee 59 
                   + ++ ++ a+++ael++++a+L++
    KOO22482.1 150 CLTRATAQAAATAELAAVQAALKA 173
                   456667778888888888888865 PP

  == domain 3  score: -2.1 bits;  conditional E-value: 1.6
  ABC_tran_CTD  19 aLEeeiaeleaelad 33 
                   a E+ +ael++++++
    KOO22482.1 184 ASEAAQAELNERMSA 198
                   334444444444444 PP

  == domain 4  score: -4.0 bits;  conditional E-value: 6
  ABC_tran_CTD  26 eleaeladpelysdpeklaelsaeleeleaeLeelyer 63 
                   +l+a+l++++l ++ ++ +++ +  +++ea+ + l+e 
    KOO22482.1 233 ALQAALSAAQLQARMDAQMQAAEATKAAEAQRASLEEA 270
                   44444444444443322222222222222222222222 PP

  == domain 5  score: 2.8 bits;  conditional E-value: 0.048
  ABC_tran_CTD  11 eeleaeIeaLEeeiaeleaeladpelysdpeklaelsaeleeleae 56 
                   e+l a++e+     a+le + +d+e  +   +l++  ++ ++l+++
    KOO22482.1 272 EALQARLEKAVSARAALERRASDAE--AEARRLQKCEKQAAALDTQ 315
                   689999******************9..8889999999999999876 PP

  == domain 6  score: 8.3 bits;  conditional E-value: 0.00094
  ABC_tran_CTD   6 eqreleeleaeIeaLEeeiaeleaeladpe 35 
                   e r+l+++e++ +aL+++ ++l++ela+ +
    KOO22482.1 298 EARRLQKCEKQAAALDTQCKALQTELAKKA 327
                   899***********************9876 PP

>> TruB_N  TruB family pseudouridylate synthase (N terminal domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.3   0.9    0.0019       5.5      67     118 ..     171     222 ..     147     245 .. 0.76
   2 ?    4.5   2.4     0.014        41      54     120 ..     244     310 ..     226     329 .. 0.84

  Alignments for each domain:
  == domain 1  score: 7.3 bits;  conditional E-value: 0.0019
                 .--TT--HHHHHHHHHHC-EEE------------------------------ CS
      TruB_N  67 ekveklteekleevlkkftGeieqvppmySAvkvnGkrlyelaregeeverk 118
                  k++++  +k  ++ ++ + e++ + +++SA+  +  r+ e ar ge   r+
  KOO22482.1 171 LKATRVAAAKAAAASEAAQAELNERMSAVSALAAENARALEAARTGELDARA 222
                 45778889999999999*****************************754443 PP

  == domain 2  score: 4.5 bits;  conditional E-value: 0.014
                 ETTSBTTS-EEE-.--TT--HHHHHHHHHHC-EEE-------------------------------- CS
      TruB_N  54 tdteDaegeileeekveklteekleevlkkftGeieqvppmySAvkvnGkrlyelaregeeverkkr 120
                  +  Da+ +  e +k+++ ++++lee+ ++++ ++e+  ++ +A++ +   +   ar+ +++e ++ 
  KOO22482.1 244 QARMDAQMQAAEATKAAEAQRASLEEAREALQARLEKAVSARAALERRASDAEAEARRLQKCEKQAA 310
                 456677888887778999*****************************99999999999998887765 PP

>> Fez1  Fez1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.6   0.5    0.0064        19      18     154 ..      65     104 ..      19     116 .. 0.56
   2 ?    3.0  12.5      0.04   1.2e+02      15     127 ..      62     212 ..      58     245 .. 0.58
   3 ?    6.5  12.5    0.0034        10      22     107 ..     251     334 ..     241     349 .. 0.86

  Alignments for each domain:
  == domain 1  score: 5.6 bits;  conditional E-value: 0.0064
        Fez1  18 QLkdsqaevtqklseivalkaqlrelrakleekeeeikeleesleektlelevcenelqrkkseaellrekvekleeelkelreelselsleeeeaale 116
                  L                                                                                               ++
  KOO22482.1  65 SL-----------------------------------------------------------------------------------------------VH 68 
                 11...............................................................................................11 PP

        Fez1 117 sdeakaqrqeaeeleelkreverlraeLkeerqkkeeq 154
                   +++++ +++ ++++l+++++ l aeL+   q+ ++ 
  KOO22482.1  69 --AQQENARHTGTIHALEAQLAALMAELASATQRADRA 104
                 ..112223335678888888888888888888877665 PP

  == domain 2  score: 3.0 bits;  conditional E-value: 0.04
        Fez1  15 LKqQLkdsqaevtqklseivalkaqlrelrakleekeeeikeleesleektlelevcenelqrk.....................kseaellre.kvek 91 
                 + + L  +q+e ++ ++ i al aql  l a+l +  +++++++e+    +  + v++ el+ +                     + ++ l+r   + +
  KOO22482.1  62 VQESLVHAQQENARHTGTIHALEAQLAALMAELASATQRADRADERCLASEGRVGVLHVELHAMreacaratgdaasaraaadeaR-TECLTRAtAQAA 159
                 556678899*************************************9999999999999999985566655555555554444321.111111101222 PP

        Fez1  92 leeelkelreelselsleeeeaalesdeakaqrqe.................a 127
                 + +el+ ++ +l+++   +++aa++s++a+a+ +e                 a
  KOO22482.1 160 ATAELAAVQAALKATRVAAAKAAAASEAAQAELNErmsavsalaaenaraleA 212
                 33344444444444444444443444443333333444444444433333330 PP

  == domain 3  score: 6.5 bits;  conditional E-value: 0.0034
        Fez1  22 sqaevtqklseivalkaqlrelrakleekeeeikeleesleektlelevcenelqrkkseaellrekvekleeelkelreelsels 107
                 +qa  ++k+ e  a +a+l e+r++l+++ e++ +++++le ++ + e    +lq+ +++a  l+ + ++l++el++  ++l+++ 
  KOO22482.1 251 MQAAEATKAAE--AQRASLEEAREALQARLEKAVSARAALERRASDAEAEARRLQKCEKQAAALDTQCKALQTELAKKADALERVL 334
                 34444555555..78************************************************************99988887755 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (420 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2796  (0.155948); expected 358.6 (0.02)
Passed bias filter:                      667  (0.0372023); expected 358.6 (0.02)
Passed Vit filter:                       148  (0.00825478); expected 17.9 (0.001)
Passed Fwd filter:                        59  (0.00329076); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 1.26u 0.36s 00:00:01.62 Elapsed: 00:00:00.52
# Mc/sec: 2445.55
//
Query:       KOO22483.1  [L=1121]
Description: ran-binding protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.6e-22   79.6   1.7    1.6e-22   79.6   1.7    4.7  5  Importin_rep_4  Importin repeat
    9.2e-19   65.9  11.8    0.00036   20.6   0.0   11.5 13  HEAT            HEAT repeat
    4.1e-16   59.1  14.4    2.4e-07   31.1   0.0    8.6  8  HEAT_2          HEAT repeats
    3.2e-14   53.1  22.2     0.0026   18.2   0.0   11.1 11  HEAT_EZ         HEAT-like repeat
      3e-08   34.1   0.0       0.08   13.5   0.0    6.3  7  Vac14_Fab1_bd   Vacuolar 14 Fab1-binding region
    3.4e-06   27.1   1.1    2.1e-05   24.6   0.0    2.8  3  Importin_rep_6  Importin repeat 6
    1.3e-05   25.4   3.1       0.12   12.4   0.0    4.8  4  Cnd1            non-SMC mitotic condensation complex subunit 
    2.3e-05   23.7   0.2        0.2   10.7   0.0    5.5  6  MMS19_C         RNAPII transcription regulator C-terminal
    0.00019   21.1   0.0       0.49    9.9   0.0    4.1  5  Tti2            Tti2 family
    0.00029   21.0   0.1       0.39   10.9   0.0    4.2  3  RTP1_C1         Required for nuclear transport of RNA pol II 
     0.0022   17.8   0.1       0.82    9.4   0.0    4.4  4  RIX1            rRNA processing/ribosome biogenesis
      0.003   17.5   0.8         19    5.1   0.0    5.5  6  DUF3385         Domain of unknown function (DUF3385)
  ------ inclusion threshold ------
      0.012   15.5   2.4        7.5    6.3   0.0    4.6  4  TFCD_C          Tubulin folding cofactor D C terminal
       0.02   15.2   0.0        9.1    6.7   0.0    3.3  2  Cohesin_HEAT    HEAT repeat associated with sister chromatid 
      0.021   14.8   0.3       0.44   10.5   0.1    3.2  2  IBN_N           Importin-beta N-terminal domain
      0.078   13.7   6.1        8.2    7.4   1.0    5.7  3  HEAT_PBS        PBS lyase HEAT-like repeat
       0.37   10.9   9.5         34    4.7   0.1    6.9  8  Arm             Armadillo/beta-catenin-like repeat
       0.81    9.2   9.1        2.5    7.6   0.0    4.6  5  CLASP_N         CLASP N terminal


Domain annotation for each model (and alignments):
>> Importin_rep_4  Importin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.5   0.0      0.01        10       9      38 ..     241     271 ..     236     274 .. 0.78
   2 !   79.6   1.7   1.6e-25   1.6e-22       1      90 []     276     370 ..     276     370 .. 0.96
   3 ?   -1.0   0.1       2.2   2.2e+03      61      85 ..     646     669 ..     641     671 .. 0.66
   4 ?    0.2   0.5      0.94   9.3e+02      28      71 ..     809     852 ..     799     866 .. 0.54
   5 ?   -2.9   0.1       8.4   8.4e+03      57      80 ..     980    1003 ..     976    1005 .. 0.76

  Alignments for each domain:
  == domain 1  score: 6.5 bits;  conditional E-value: 0.01
  Importin_rep_4   9 RqsalEllvtlaenaPkmvrkeae.fteklv 38 
                      +salE++v +ae++Pk ++++ +  ++ +v
      KOO22483.1 241 CRSALEVFVEIAESQPKFLKRHLHeAVNGMV 271
                     468***************9987654666665 PP

  == domain 2  score: 79.6 bits;  conditional E-value: 1.6e-25
  Importin_rep_4   1 nkdledaaRqsalEllvtlaenaPkmvrkeaefteklvvqvLslmtev.....eddeeWatsddlddddeedeyvaaeqalDRlalkLGGkallp 90 
                     n  leda+R+ alE l t+aen  +  +k  +f+e+ v++ Ls+m e+     e+ +eW++ +++d+d+e  +y+++e+a+DRla++LGGk ++p
      KOO22483.1 276 NTSLEDATRHLALEFLLTVAENMTSAAKKLDRFCETTVPVALSMMLEIdmntaEELAEWEEREEDDEDEEITNYDVGEEAIDRLAIALGGKLMVP 370
                     6789********************************************999988999**********************************9986 PP

  == domain 3  score: -1.0 bits;  conditional E-value: 2.2
  Importin_rep_4  61 ddddeedeyvaaeqalDRlalkLGG 85 
                     +d d+e ++v ae+ ++ +++++ G
      KOO22483.1 646 TDADDE-DEVEAEEGMESVTVAIRG 669
                     333444.578888888888777666 PP

  == domain 4  score: 0.2 bits;  conditional E-value: 0.94
  Importin_rep_4  28 rkeaefteklvvqvLslmteveddeeWatsddlddddeedeyva 71 
                     +++ e +++lvv+v++   e  +++  ++ dd ++d  e +++ 
      KOO22483.1 809 QQSFEVVKELVVEVIERRDERSKAAGDEEGDDEEEDAREADAIN 852
                     45555555666666555555544444444555555544444444 PP

  == domain 5  score: -2.9 bits;  conditional E-value: 8.4
  Importin_rep_4   57 sddlddddeedeyvaaeqalDRla 80  
                      ++++ d+d+ + ++ a +al +l 
      KOO22483.1  980 AEQAFDEDNASASDNAVSALGKLC 1003
                      677778888888999999988775 PP

>> HEAT  HEAT repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.0       6.1   6.1e+03       5      23 ..      14      32 ..      12      35 .. 0.73
   2 ?    0.5   0.1         1     1e+03       4      22 ..      46      65 ..      43      69 .. 0.77
   3 ?    2.5   0.0      0.23   2.3e+02       4      28 ..      97     122 ..      94     125 .. 0.82
   4 ?   -1.6   0.0       4.6   4.6e+03       1      29 [.     137     165 ..     137     167 .. 0.88
   5 ?   -1.5   0.0       4.4   4.4e+03       5      29 ..     229     253 ..     225     255 .. 0.80
   6 !   11.0   0.0   0.00043      0.42       2      26 ..     373     397 ..     372     402 .. 0.84
   7 !   15.5   0.0   1.6e-05     0.016       2      29 ..     414     441 ..     413     443 .. 0.88
   8 !    7.9   0.2    0.0042       4.2       1      31 []     455     485 ..     455     485 .. 0.97
   9 ?   -1.4   0.0       4.1   4.1e+03      21      30 ..     608     617 ..     597     618 .. 0.76
  10 ?   -1.3   0.0       3.7   3.7e+03      15      28 ..     725     738 ..     724     740 .. 0.83
  11 ?   -1.8   0.0       5.4   5.4e+03      20      30 ..     860     870 ..     858     871 .. 0.81
  12 !   20.6   0.0   3.6e-07   0.00036       1      29 [.     927     955 ..     927     956 .. 0.95
  13 ?    0.1   0.1       1.3   1.3e+03      18      28 ..     993    1003 ..     983    1005 .. 0.87

  Alignments for each domain:
  == domain 1  score: -1.9 bits;  conditional E-value: 6.1
                HHHHHT-SSHHHHHHHHHH CS
        HEAT  5 llkllsDpspeVReaAaka 23
                +l++l +++ ++R+ A +a
  KOO22483.1 14 MLQALLSQDNSIRRQAEEA 32
                5677778999999888655 PP

  == domain 2  score: 0.5 bits;  conditional E-value: 1
                HHHHHH.T-SSHHHHHHHHH CS
        HEAT  4 lllkll.sDpspeVReaAak 22
                 l+++l + ++ eVR+ +a 
  KOO22483.1 46 GLVHMLcTNQAEEVRALCAV 65
                5788866999999***9985 PP

  == domain 3  score: 2.5 bits;  conditional E-value: 0.23
                 HHHHHHT-.SSHHHHHHHHHHHHHHH CS
        HEAT   4 lllkllsD.pspeVReaAakaLgala 28 
                 +ll ++++ p  ++R+ ++ a+g+l 
  KOO22483.1  97 HLLACIQSePKKHIRKKVCDAVGQLG 122
                 6788884449999***********95 PP

  == domain 4  score: -1.6 bits;  conditional E-value: 4.6
                 HHHHHHHHHT-SSHHHHHHHHHHHHHHHH CS
        HEAT   1 llPlllkllsDpspeVReaAakaLgalae 29 
                 llP++l+  ++ +++  ea++  + ala 
  KOO22483.1 137 LLPFMLQGTRSGDANMHEASLTIFNALAD 165
                 79999999999999999999999999986 PP

  == domain 5  score: -1.5 bits;  conditional E-value: 4.4
                 HHHHHT-SSHHHHHHHHHHHHHHHH CS
        HEAT   5 llkllsDpspeVReaAakaLgalae 29 
                 + ++l++ + e  ++A++ ++++ae
  KOO22483.1 229 IAQALTSGEEESCRSALEVFVEIAE 253
                 6777888888888899999999998 PP

  == domain 6  score: 11.0 bits;  conditional E-value: 0.00043
                 HHHHHHHHT-SSHHHHHHHHHHHHH CS
        HEAT   2 lPlllkllsDpspeVReaAakaLga 26 
                 +  +++l+++p+++ R aA+ ++ +
  KOO22483.1 373 FEKIQQLIKSPDWKHRHAALMSISQ 397
                 56799999*************9987 PP

  == domain 7  score: 15.5 bits;  conditional E-value: 1.6e-05
                 HHHHHHHHT-SSHHHHHHHHHHHHHHHH CS
        HEAT   2 lPlllkllsDpspeVReaAakaLgalae 29 
                 + +++   +D++p+VR aA++++g+++ 
  KOO22483.1 414 VTMIVGHFRDEHPRVRWAAINTVGQMCT 441
                 56788899******************96 PP

  == domain 8  score: 7.9 bits;  conditional E-value: 0.0042
                 HHHHHHHHHT-SSHHHHHHHHHHHHHHHHCS CS
        HEAT   1 llPlllkllsDpspeVReaAakaLgalaevl 31 
                 +lP+l+  + D + +V + Aa a+ +++e++
  KOO22483.1 455 VLPALIATMDDGCKRVQAHAAAAVINFCEHC 485
                 69***************************98 PP

  == domain 9  score: -1.4 bits;  conditional E-value: 4.1
                 HHHHHHHHHC CS
        HEAT  21 akaLgalaev 30 
                 ++a+g+++++
  KOO22483.1 608 LQACGRICKC 617
                 799*****97 PP

  == domain 10  score: -1.3 bits;  conditional E-value: 3.7
                 HHHHHHHHHHHHHH CS
        HEAT  15 eVReaAakaLgala 28 
                 eVR +A+ a+ +l+
  KOO22483.1 725 EVRVNACHAMPDLL 738
                 8******9987775 PP

  == domain 11  score: -1.8 bits;  conditional E-value: 5.4
                 HHHHHHHHHHC CS
        HEAT  20 AakaLgalaev 30 
                  +++Lg+l +v
  KOO22483.1 860 LVECLGTLFKV 870
                 589****9987 PP

  == domain 12  score: 20.6 bits;  conditional E-value: 3.6e-07
                 HHHHHHHHHT-SSHHHHHHHHHHHHHHHH CS
        HEAT   1 llPlllkllsDpspeVReaAakaLgalae 29 
                 llP+ l+  +Dp peVR+aA++ Lg la 
  KOO22483.1 927 LLPAYLQYARDPKPEVRQAAVYGLGVLAA 955
                 89************************985 PP

  == domain 13  score: 0.1 bits;  conditional E-value: 1.3
                  HHHHHHHHHHH CS
        HEAT   18 eaAakaLgala 28  
                  ++A+ aLg+l+
  KOO22483.1  993 DNAVSALGKLC 1003
                  68********9 PP

>> HEAT_2  HEAT repeats
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.7   0.5      0.17   1.7e+02       4      56 ..      14      68 ..      11      95 .. 0.72
   2 ?    3.3   0.0      0.11   1.1e+02      36      59 ..      98     122 ..      76     148 .. 0.73
   3 ?    5.0   0.0     0.031        31       3      82 ..      97     197 ..      94     203 .. 0.56
   4 ?   -0.1   0.0       1.2   1.2e+03      17      64 ..     226     279 ..     214     296 .. 0.63
   5 !   31.1   0.0   2.4e-10   2.4e-07       5      86 ..     376     477 ..     374     479 .. 0.75
   6 ?    5.2   0.1     0.028        28      32      71 ..     455     494 ..     449     521 .. 0.64
   7 ?    1.2   0.0      0.49   4.9e+02      18      58 ..     686     737 ..     679     785 .. 0.66
   8 !   15.9   0.3   1.3e-05     0.013      31      76 ..     926     983 ..     918    1000 .. 0.77

  Alignments for each domain:
  == domain 1  score: 2.7 bits;  conditional E-value: 0.17
      HEAT_2  4 LlqalendpdpevrraairaLgri.gnpea.lpaLvell.ededpavRraaaeaLg 56
                +lqal  + d  +rr+a +a  +  +n++a +  Lv +l +++ ++vR+  a  L 
  KOO22483.1 14 MLQAL-LSQDNSIRRQAEEAFEQAkANKDAlFSGLVHMLcTNQAEEVRALCAVLLR 68
                57888.68888999999999996424444438999998878888999988776664 PP

  == domain 2  score: 3.3 bits;  conditional E-value: 0.11
      HEAT_2  36 Lvell.ededpavRraaaeaLgaig 59 
                 L+ ++ + ++ ++R+ +++a g++g
  KOO22483.1  98 LLACIqSEPKKHIRKKVCDAVGQLG 122
                 5556634467778888888888776 PP

  == domain 3  score: 5.0 bits;  conditional E-value: 0.031
      HEAT_2   3 aLlqalendpdpevrraairaLg.......rignp.......ealpaLvellededpa...vRraaaeaLgaig.......dpealpaLkelldddddd 77 
                 +Ll+ +++ p + +r+++++a g       +           e+lp +++  ++ d++      ++ +aL+ +        +   l++ + +l++d+  
  KOO22483.1  97 HLLACIQSEPKKHIRKKVCDAVGqlginllN---AdqqngwpELLPFMLQGTRSGDANmheASLTIFNALADFMcekmvpyHATLLEVFRGSLQTDQPM 192
                 6788888888888888888888844444331...03344444777777777755554400144444456665522223333455677777777777777 PP

      HEAT_2  78 vvRea 82 
                  vR a
  KOO22483.1 193 AVRIA 197
                 77766 PP

  == domain 4  score: -0.1 bits;  conditional E-value: 1.2
      HEAT_2  17 rraairaLgrignp...ealpaLvell.eded..pavRraaaeaLgaigdpeal 64 
                 ++a+++aL +  ++   +al+ +ve++ + ++   +  ++a++ ++ai+++ +l
  KOO22483.1 226 QQAIAQALTSGEEEscrSALEVFVEIAeSQPKflKRHLHEAVNGMVAIASNTSL 279
                 566667776433333336677777777334554446667777777777754433 PP

  == domain 5  score: 31.1 bits;  conditional E-value: 2.4e-10
      HEAT_2   5 lqalendpdpevrraairaLgrignp..........ealpaLvellededpavRraaaeaLgai....g.......dpealpaLkellddddddvvRea 82 
                 +q+l ++pd++ r+aa++++ + g+           +++ ++v   +de+p+vR+aa+++ g++    g       ++ +lpaL + +dd  ++v ++ 
  KOO22483.1 376 IQQLIKSPDWKHRHAALMSISQSGEGcemamkanlqQIVTMIVGHFRDEHPRVRWAAINTVGQMctdfGpdlqeelHELVLPALIATMDDGCKRV-QAH 473
                 68888****************5555444555555559999999999****************995555243333333559999999998776654.666 PP

      HEAT_2  83 Aaea 86 
                 Aa a
  KOO22483.1 474 AAAA 477
                 6655 PP

  == domain 6  score: 5.2 bits;  conditional E-value: 0.028
      HEAT_2  32 alpaLvellededpavRraaaeaLgaigdpealpaLkell 71 
                 +lpaL+  ++d   +v+++aa a   + ++ + p Lk++l
  KOO22483.1 455 VLPALIATMDDGCKRVQAHAAAAVINFCEHCSKPTLKRYL 494
                 6899999999999999999999998775444444444333 PP

  == domain 7  score: 1.2 bits;  conditional E-value: 0.49
      HEAT_2  18 raairaLgrignp..........ealpaLvell.ededpavRraaaeaLgai 58 
                 ++a++ L +++ +          ++ + Lv+l+      +vR +a++a+  +
  KOO22483.1 686 ATACHMLRTYALElkdaffphvaDVARVLVPLIgFQYMDEVRVNACHAMPDL 737
                 5666666644444444455566677777888883345577888888887433 PP

  == domain 8  score: 15.9 bits;  conditional E-value: 1.3e-05
      HEAT_2  31 ealpaLvellededpavRraaaeaLg.........aig...dpealpaLkellddddd 76 
                 ++lpa +++++d++p+vR+aa+  Lg         a+g    ++a+++L e +  ++ 
  KOO22483.1 926 TLLPAYLQYARDPKPEVRQAAVYGLGvlaacdngaAFGaaqQQQAAQVLIEVFEAEQA 983
                 5789999999*************99866655555544533358899999998887765 PP

>> HEAT_EZ  HEAT-like repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.1   0.1      0.29   2.9e+02      16      53 ..      30      68 ..      24      69 .. 0.85
   2 ?    2.8   0.0      0.18   1.8e+02      31      55 .]      96     121 ..      83     121 .. 0.85
   3 ?    3.0   0.1      0.15   1.5e+02       2      34 ..     193     226 ..     192     245 .. 0.84
   4 !   18.2   0.0   2.7e-06    0.0026       1      55 []     385     439 ..     385     439 .. 0.95
   5 !   13.9   0.2   6.1e-05      0.06      18      52 ..     444     478 ..     442     481 .. 0.92
   6 ?    3.6   0.4       0.1     1e+02       6      52 ..     474     520 ..     473     523 .. 0.78
   7 ?    0.9   0.0      0.69   6.9e+02       5      33 ..     514     542 ..     506     543 .. 0.85
   8 ?    3.7   0.0     0.095        95      12      38 ..     612     639 ..     607     645 .. 0.78
   9 ?   -0.3   0.0       1.7   1.7e+03      42      51 ..     724     733 ..     696     734 .. 0.68
  10 !    9.4   0.0    0.0016       1.6      25      55 .]     923     953 ..     899     953 .. 0.75
  11 !   10.1   0.2    0.0009      0.89       1      55 []     940    1002 ..     940    1002 .. 0.77

  Alignments for each domain:
  == domain 1  score: 2.1 bits;  conditional E-value: 0.29
     HEAT_EZ 16 ggepellqplvpeilpaLlalLnddsd.eVRaaAagaLg 53
                ++++e+ + + +++   L+ +L++ ++ eVRa +a  L+
  KOO22483.1 30 EEAFEQAKANKDALFSGLVHMLCTNQAeEVRALCAVLLR 68
                56677777788899999******************9987 PP

  == domain 2  score: 2.8 bits;  conditional E-value: 0.18
     HEAT_EZ  31 paLlalLnddsd.eVRaaAagaLgnl 55 
                   Lla+ +++++ ++R++++ a g+l
  KOO22483.1  96 SHLLACIQSEPKkHIRKKVCDAVGQL 121
                 5688899888888**********997 PP

  == domain 3  score: 3.0 bits;  conditional E-value: 0.15
     HEAT_EZ   2 rvRraAawaLGr.laggepellqplvpeilpaLl 34 
                 +vR a++ +L++ l++  + + + + +e++p++ 
  KOO22483.1 193 AVRIAGLKGLASfLLALQSADTRNHFQELVPLMQ 226
                 69***********777999999999999999987 PP

  == domain 4  score: 18.2 bits;  conditional E-value: 2.7e-06
     HEAT_EZ   1 wrvRraAawaLGrlaggepellqplvpeilpaLlalLnddsdeVRaaAagaLgnl 55 
                 w  R+aA++ ++   +g+  +++ ++++i+   +   +d++++VR+aA+ + g++
  KOO22483.1 385 WKHRHAALMSISQSGEGCEMAMKANLQQIVTMIVGHFRDEHPRVRWAAINTVGQM 439
                 788********7788************************************9997 PP

  == domain 5  score: 13.9 bits;  conditional E-value: 6.1e-05
     HEAT_EZ  18 epellqplvpeilpaLlalLnddsdeVRaaAagaL 52 
                 +p+l++ l++ +lpaL+a++ d +++V+a Aa a 
  KOO22483.1 444 GPDLQEELHELVLPALIATMDDGCKRVQAHAAAAV 478
                 6999***********************99999885 PP

  == domain 6  score: 3.6 bits;  conditional E-value: 0.1
     HEAT_EZ   6 aAawaLGr.laggepellqplvpeilpaLlalLnddsdeVRaaAagaL 52 
                 aAa+++ + ++ + +++l+ ++p++l  L+ lL+    +V ++A+ a+
  KOO22483.1 474 AAAAVI-NfCEHCSKPTLKRYLPDLLGKLMVLLQRNVRRVTEQAVTAI 520
                 788888.9777777788***************9876667766666665 PP

  == domain 7  score: 0.9 bits;  conditional E-value: 0.69
     HEAT_EZ   5 raAawaLGrlaggepellqplvpeilpaL 33 
                 + A+ a++++a ++ e+ +p+    +p L
  KOO22483.1 514 EQAVTAIASVADVAEEDFAPYYGSFMPGL 542
                 89**************9999988888876 PP

  == domain 8  score: 3.7 bits;  conditional E-value: 0.095
     HEAT_EZ  12 GrlaggepellqplvpeilpaLl.alLn 38 
                 Gr++ + +e  +p++p ++p+Ll ++L 
  KOO22483.1 612 GRICKCLGEKFSPYLPYVIPPLLrSALV 639
                 77888889999************44444 PP

  == domain 9  score: -0.3 bits;  conditional E-value: 1.7
     HEAT_EZ  42 deVRaaAaga 51 
                 deVR +A++a
  KOO22483.1 724 DEVRVNACHA 733
                 69******98 PP

  == domain 10  score: 9.4 bits;  conditional E-value: 0.0016
     HEAT_EZ  25 lvpeilpaLlalLnddsdeVRaaAagaLgnl 55 
                 +   +lpa l+  +d+++eVR+aA++ Lg l
  KOO22483.1 923 YARTLLPAYLQYARDPKPEVRQAAVYGLGVL 953
                 566788999999999999*********9975 PP

  == domain 11  score: 10.1 bits;  conditional E-value: 0.0009
     HEAT_EZ    1 wrvRraAawaLGr.......laggepellqplvpeilpaLl..alLnddsdeVRaaAagaLgnl 55  
                  ++vR aA+ +LG        +a+g+++++q + ++++  +   ++   d+++   +A+ aLg+l
  KOO22483.1  940 PEVRQAAVYGLGVlaacdngAAFGAAQQQQ-AAQVLIEVFEaeQAFDEDNASASDNAVSALGKL 1002
                  68*********9987777777766666666.7777888888855555577799********987 PP

>> Vac14_Fab1_bd  Vacuolar 14 Fab1-binding region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   0.0       2.1   2.1e+03      29      64 ..      11      45 ..       3      65 .. 0.75
   2 ?    5.4   0.0     0.029        28       3      36 ..     195     229 ..     193     281 .. 0.69
   3 ?   -1.7   0.0       4.5   4.5e+03      22      60 ..     260     300 ..     242     313 .. 0.64
   4 !   13.5   0.0   8.1e-05      0.08       2      50 ..     387     435 ..     386     441 .. 0.92
   5 ?    4.7   0.0     0.046        46      23      77 ..     450     505 ..     437     519 .. 0.77
   6 ?   -0.1   0.0       1.5   1.5e+03       6      72 ..     566     632 ..     562     650 .. 0.64
   7 ?   -2.0   0.0       5.5   5.5e+03      22      47 ..     921     946 ..     914     954 .. 0.75

  Alignments for each domain:
  == domain 1  score: -0.6 bits;  conditional E-value: 2.1
  Vac14_Fab1_bd 29 vkpvlkcfsDkdsrvRyyacEslyniakvakgevlk 64
                    +++l+++  +d+ +R  a E+ +  ak+ k+++++
     KOO22483.1 11 FEMMLQALLSQDNSIRRQAEEA-FEQAKANKDALFS 45
                   4678889999999999888776.6777777777665 PP

  == domain 2  score: 5.4 bits;  conditional E-value: 0.029
  Vac14_Fab1_bd   3 rkggligLaavaialekk.ikeyleeivkpvlkcf 36 
                    r +gl gLa+  +al+++ ++++++e+v+ + +++
     KOO22483.1 195 RIAGLKGLASFLLALQSAdTRNHFQELVPLMQQAI 229
                    889*************9989999999998776554 PP

  == domain 3  score: -1.7 bits;  conditional E-value: 4.5
  Vac14_Fab1_bd  22 keyleeivkpvlkcfsDk..dsrvRyyacEslyniakvakg 60 
                    k++l+e v+ ++++ s +  ++ +R+ a E l  +a  + +
     KOO22483.1 260 KRHLHEAVNGMVAIASNTslEDATRHLALEFLLTVAENMTS 300
                    55555666655555544422566788888888777765544 PP

  == domain 4  score: 13.5 bits;  conditional E-value: 8.1e-05
  Vac14_Fab1_bd   2 arkggligLaavaialekkikeyleeivkpvlkcfsDkdsrvRyyacEs 50 
                    +r+++l+++     + e ++k  l++iv++++  f+D+  rvR+ a+ +
     KOO22483.1 387 HRHAALMSISQSGEGCEMAMKANLQQIVTMIVGHFRDEHPRVRWAAINT 435
                    789999999999999999**************************99865 PP

  == domain 5  score: 4.7 bits;  conditional E-value: 0.046
  Vac14_Fab1_bd  23 eyleeivkpvlkcfsDkdsrvRyyacEslyniakvakgevlk.llneifdalvklv 77 
                    e  e +++ ++++++D  +rv  +a+ ++ n +  + +  lk +l +++  l+ l+
     KOO22483.1 450 ELHELVLPALIATMDDGCKRVQAHAAAAVINFCEHCSKPTLKrYLPDLLGKLMVLL 505
                    455667888999***********************999999746777666665554 PP

  == domain 6  score: -0.1 bits;  conditional E-value: 1.5
  Vac14_Fab1_bd   6 gligLaavaialekkikeyleeivkpvlkcfsDkdsrvRyyacEslyniakvakgevlkllneifda 72 
                    +lig+a    a e ++ke+++ i+++  +   D d+    +   +   i+k + +++  +l  +   
     KOO22483.1 566 SLIGVAVGDAAFEPDAKEVMDLIIQTQQTEALDPDDPQIQFMLQACGRICKCLGEKFSPYLPYVIPP 632
                    5777888888888889999999998877766666554444445566666666666666666655544 PP

  == domain 7  score: -2.0 bits;  conditional E-value: 5.5
  Vac14_Fab1_bd  22 keyleeivkpvlkcfsDkdsrvRyya 47 
                    +ey +++++  l++ +D   +vR  a
     KOO22483.1 921 TEYARTLLPAYLQYARDPKPEVRQAA 946
                    56777888888888888888888655 PP

>> Importin_rep_6  Importin repeat 6
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.0         9     9e+03      85     102 ..     210     227 ..     199     231 .. 0.65
   2 ?   -0.6   0.1       1.5   1.5e+03      24      79 ..     303     360 ..     282     381 .. 0.60
   3 !   24.6   0.0   2.1e-08   2.1e-05      18     106 ..     800     893 ..     789     895 .. 0.81

  Alignments for each domain:
  == domain 1  score: -3.2 bits;  conditional E-value: 9
  Importin_rep_6  85 kkseylpalqtllpliss 102
                     +  +  +++q+l+pl++ 
      KOO22483.1 210 QSADTRNHFQELVPLMQQ 227
                     44456689******9876 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 1.5
  Importin_rep_6  24 dqlakftk.gvsanlsdvyervkereneddeynedv.dddyddytdedlldeinksla 79 
                     ++l++f++ +v   ls + e   +  +e  e++e   dd+ ++ t+ d+ +e    la
      KOO22483.1 303 KKLDRFCEtTVPVALSMMLEIDMNTAEELAEWEEREeDDEDEEITNYDVGEEAIDRLA 360
                     5555555413555566666655555566666666441344456777776666555555 PP

  == domain 3  score: 24.6 bits;  conditional E-value: 2.1e-08
  Importin_rep_6  18 analsedqlakftkgvsanlsdvyervkerene.ddeynedvdd...dyddytdedlldeinkslaailkakkseylpalq.tllplissylqd 106
                     a  l+ + l++  + v + + +v er +er +  +de  +d ++   + d   de+l+  +   l +++k  +s  lp +q +l p+++++lq 
      KOO22483.1 800 AAKLTPEELQQSFEVVKELVVEVIERRDERSKAaGDEEGDDEEEdarEADAINDENLISTLVECLGTLFKVYGSPLLPLFQaQLQPIVQAMLQP 893
                     566899999999999*************997531344444444311145899****************************955899****9985 PP

>> Cnd1  non-SMC mitotic condensation complex subunit 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.8   0.3      0.22   2.2e+02      58     148 ..       9      93 ..       5     115 .. 0.66
   2 ?    3.4   0.1     0.072        71      75     135 ..     241     303 ..     200     316 .. 0.82
   3 !   12.4   0.0   0.00012      0.12      18     115 ..     409     516 ..     390     530 .. 0.82
   4 ?    3.6   0.0     0.063        63      31     114 ..     936    1031 ..     925    1053 .. 0.67

  Alignments for each domain:
  == domain 1  score: 1.8 bits;  conditional E-value: 0.22
        Cnd1  58 gflselaklleDenprVvanalaalteiseksenaiynllpdiisklsdalnecsewgqitilefLlsyipkdkqeaeslveklcprlqha 148
                 +++++++++l  ++++++  a  a+++ + ++ +a+++ l +++   +   +e+   + +   ++++ + ++ +    sl+  l p + +a
  KOO22483.1   9 QQFEMMLQALLSQDNSIRRQAEEAFEQAKANK-DALFSGLVHMLCTNQ--AEEVRALCAVLLRKSVMACATQAQG---SLISLLSPAVGQA 93 
                 57888999999999999999999998888776.566666665554433..3455555555555555555555554...5555555555555 PP

  == domain 2  score: 3.4 bits;  conditional E-value: 0.072
        Cnd1  75 vanalaalteiseksenaiynllpdiisklsd..alnecsewgqitilefLlsyipkdkqeae 135
                   +al ++ ei+e +++ + + l++ ++ +++  + ++++ ++++  lefLl+  ++ ++ a+
  KOO22483.1 241 CRSALEVFVEIAESQPKFLKRHLHEAVNGMVAiaSNTSLEDATRHLALEFLLTVAENMTSAAK 303
                 5678999*********999999999999999765555699999999*****999888777444 PP

  == domain 3  score: 12.4 bits;  conditional E-value: 0.00012
        Cnd1  18 lveylvepLrkrLkDedpyVRktaaivvakL...ilndmvkekg..flselaklleDenprVvanalaalteisek.senaiynllpdiisklsdalne 110
                  ++++v+ +   ++De+p VR  a+ +v ++   + +d+ +e    +l  l   ++D  +rV+a a aa  +  e  s+ ++ + lpd++ kl   l+ 
  KOO22483.1 409 NLQQIVTMIVGHFRDEHPRVRWAAINTVGQMctdFGPDLQEELHelVLPALIATMDDGCKRVQAHAAAAVINFCEHcSKPTLKRYLPDLLGKLMVLLQR 507
                 5677888888899*******************9999**99988878999*********************99999977667778899999999874333 PP

        Cnd1 111 ....csewg 115
                     ++e++
  KOO22483.1 508 nvrrVTEQA 516
                 222255544 PP

  == domain 4  score: 3.6 bits;  conditional E-value: 0.063
        Cnd1   31 kDedpyVRktaaivvakL............ilndmvkekgflselaklleDenprVvanalaalteiseksenaiynllpdiisklsdalnecsew 114 
                  +D++p VR+ a++++  L             +++  ++   ++e +++ +++n++ ++na++al ++  +++++     p  ++ l  + ++ + w
  KOO22483.1  936 RDPKPEVRQAAVYGLGVLaacdngaafgaaQQQQAAQVLIEVFEAEQAFDEDNASASDNAVSALGKLCARTPEIGAVGWPRWLNVLPIRADKEEAW 1031
                  89***********99999875555554432222333444455666677778888888888888888887777766666666666666554444444 PP

>> MMS19_C  RNAPII transcription regulator C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.5   0.0      0.12   1.2e+02     373     405 ..     135     167 ..     133     182 .. 0.82
   2 !   10.7   0.0   0.00021       0.2     347     422 ..     193     272 ..     167     273 .. 0.78
   3 ?    0.3   0.1      0.29   2.9e+02      56     108 ..     278     328 ..     270     345 .. 0.79
   4 ?    1.7   0.0      0.11   1.1e+02      38     199 ..     367     499 ..     337     524 .. 0.60
   5 ?   -2.3   0.0       1.8   1.8e+03     165     199 ..     756     790 ..     697     804 .. 0.61
   6 ?   -0.1   0.0       0.4     4e+02      17      76 ..     990    1045 ..     975    1062 .. 0.75

  Alignments for each domain:
  == domain 1  score: 1.5 bits;  conditional E-value: 0.12
     MMS19_C 373 ptLlPlLlqaLdlpdaevkastLetlksilees 405
                 p+LlP++lq+    da++  ++L++++++++  
  KOO22483.1 135 PELLPFMLQGTRSGDANMHEASLTIFNALADFM 167
                 79*************************999843 PP

  == domain 2  score: 10.7 bits;  conditional E-value: 0.00021
     MMS19_C 347 etkenyLvALshllkhvPkslllpeLptLlPlLlqaL....dlpdaevkastLetlksileespslvsehlssLvprLLk 422
                   + + L +L++ l  + ++   ++ ++L+Pl+ qa+    +  ++e  +s+Le++ +i+e++p+ ++ hl++ v+ +++
  KOO22483.1 193 AVRIAGLKGLASFLLALQSADTRNHFQELVPLMQQAIaqalTSGEEESCRSALEVFVEIAESQPKFLKRHLHEAVNGMVA 272
                 5556668888888888899999999*******86654220066666689***********************99988865 PP

  == domain 3  score: 0.3 bits;  conditional E-value: 0.29
     MMS19_C  56 s.saayahailstllkllekkqtdlekeellnsyydrivprlltlvvsaastss 108
                 s + a  h+ l+ ll++ e+ +   +  ++l+ ++++ vp  l+++++  ++++
  KOO22483.1 278 SlEDATRHLALEFLLTVAENMT---SAAKKLDRFCETTVPVALSMMLEIDMNTA 328
                 24568899************99...677999**********9999999887655 PP

  == domain 4  score: 1.7 bits;  conditional E-value: 0.11
     MMS19_C  38 tlvirllnkldlvlksnessaayahailstllkllekkqtdlekeellnsyydrivprlltlvvsaastsssiltddrllevlgriinlivrslssskq 136
                  +v+ l +k+++++ks++   ++ ha l ++ +  e +++++      +   ++iv  ++  + + ++     +  +++++++g++++     + ++ q
  KOO22483.1 367 LMVPVLFEKIQQLIKSPD--WKHRHAALMSISQSGEGCEMAM------KANLQQIVTMIVGHFRDEHP-----RVRWAAINTVGQMCT----DFGPDLQ 448
                 567789999999999987..5889999999999999988333......55555555555555444443.....444555555554444....4444444 PP

     MMS19_C 137 qevleevvalfltgdaskkfeplsesasesqkqliilftailaalrkevklpdlsellnelle 199
                 +e+ e v ++++ + +++             k+  +   a++++    ++ p+l+++l +ll 
  KOO22483.1 449 EELHELVLPALIATMDDG------------CKRVQAHAAAAVINFCEHCSKPTLKRYLPDLLG 499
                 444444444444444433............122334555556666666655555555555554 PP

  == domain 5  score: -2.3 bits;  conditional E-value: 1.8
     MMS19_C 165 esqkqliilftailaalrkevklpdlsellnelle 199
                   ++    l++a++  l+ke + ++l+ell++ +e
  KOO22483.1 756 VVHQLKGYLYKAVIDQLHKEPDTETLAELLTAWCE 790
                 22333337888888888888777778887777766 PP

  == domain 6  score: -0.1 bits;  conditional E-value: 0.4
     MMS19_C   17 sayervLeaLaelss.ekqlfetlvirllnkldlvlksnessaayahailstllkllekkq 76  
                  sa  ++ +aL++l+  ++++  +  +r ln l +  +++      a+ + + l++l+e+ +
  KOO22483.1  990 SASDNAVSALGKLCArTPEIGAVGWPRWLNVLPIRADKE-----EAWKVHQQLVQLVEASN 1045
                  2267899*******9999**************8844444.....56777777777777766 PP

>> Tti2  Tti2 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.0       2.7   2.7e+03     136     173 ..     191     229 ..     186     235 .. 0.63
   2 ?   -1.8   0.0       1.8   1.8e+03      99     152 ..     385     441 ..     371     451 .. 0.73
   3 !    9.9   0.0    0.0005      0.49     118     172 ..     449     516 ..     427     522 .. 0.73
   4 ?    5.0   0.0     0.015        15     237     277 ..     599     641 ..     579     644 .. 0.79
   5 ?   -1.0   0.0         1   9.9e+02      98     151 ..     900     954 ..     891     965 .. 0.87

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 2.7
        Tti2 136 dtsvKlrGlklLqtlleklessk...llkrtGLdsvfedal 173
                  ++v++ Glk L ++l  l+s++         L  ++++a+
  KOO22483.1 191 PMAVRIAGLKGLASFLLALQSADtrnH--FQELVPLMQQAI 229
                 478888888888888888888765432..233555555555 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 1.8
        Tti2  99 lkaisvlawiirqlqsk...eieanwplivPpiLnllDdtdtsvKlrGlklLqtlle 152
                 +k  +   + i+q+ +     ++an++ iv  i+    d++++v+  +++ + +++ 
  KOO22483.1 385 WKHRHAALMSISQSGEGcemAMKANLQQIVTMIVGHFRDEHPRVRWAAINTVGQMCT 441
                 555555555566666656555589999999999999999999999999988888776 PP

  == domain 3  score: 9.9 bits;  conditional E-value: 0.0005
        Tti2 118 eanwplivPpiLnllDdtdtsvKlrGlklLqtlleklessk.............llkrtGLdsvfeda 172
                 e+   l+ P++++ +Dd   +v +++   + +++e++++               +l + +   v e+a
  KOO22483.1 449 EELHELVLPALIATMDDGCKRVQAHAAAAVINFCEHCSKPTlkrylpdllgklmVLLQRNVRRVTEQA 516
                 44456999******************************996666666666666555555555555555 PP

  == domain 4  score: 5.0 bits;  conditional E-value: 0.015
        Tti2 237 s.prlvellleqlsevveelgistvkhLkrlipllse.ilsnP 277
                 +    ++++l+ + +++++lg+++  +L  +ip l    l +P
  KOO22483.1 599 PdDPQIQFMLQACGRICKCLGEKFSPYLPYVIPPLLRsALVDP 641
                 555667999*********************9986655599998 PP

  == domain 5  score: -1.0 bits;  conditional E-value: 1
        Tti2  98 dlkaisvlawiirqlqsk.eieanwplivPpiLnllDdtdtsvKlrGlklLqtll 151
                 ++ a+ v+  ii++++ +    ++   + P+ L+ + d++++v+  ++  L  l 
  KOO22483.1 900 RVAALCVFDDIIEHCSADgGATEYARTLLPAYLQYARDPKPEVRQAAVYGLGVLA 954
                 6789999999********85579999******************99998887765 PP

>> RTP1_C1  Required for nuclear transport of RNA pol II C-terminus 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.3   0.1     0.091        91       9     108 ..     188     304 ..     183     307 .. 0.75
   2 !   10.9   0.0   0.00039      0.39       1      82 [.     373     454 ..     373     485 .. 0.90
   3 ?    0.9   0.0      0.52   5.1e+02       5      52 ..     932     981 ..     928    1008 .. 0.75

  Alignments for each domain:
  == domain 1  score: 3.3 bits;  conditional E-value: 0.091
     RTP1_C1   9 qdpllpvrahglvlLrkliekkske.avldiekilkllleaLk....dedsYvYLnaikgLvaLadvfpeevlklLleey............eeeneke 90 
                 +d+ ++vr  gl  L++ + + ++  ++ + ++++ l+++a++      ++    +a +++v++a+  p+   ++L e++            e+++++ 
  KOO22483.1 188 TDQPMAVRIAGLKGLASFLLALQSAdTRNHFQELVPLMQQAIAqaltSGEEESCRSALEVFVEIAESQPKFLKRHLHEAVngmvaiasntslEDATRHL 286
                 578889999999999987777665545555555555555555444445555557899999999999999999999999999999999888888888888 PP

     RTP1_C1  91 slderlkvGEaLlrvirr 108
                 +l+  l v+E ++ ++++
  KOO22483.1 287 ALEFLLTVAENMTSAAKK 304
                 999999999988887766 PP

  == domain 2  score: 10.9 bits;  conditional E-value: 0.00039
     RTP1_C1   1 lqealkdlqdpllpvrahglvlLrkliekkskeavldiekilkllleaLkdedsYvYLnaikgLvaLadvfpeevlklLlee 82 
                 ++++ + +++p    r  +l+++++  e  +   ++++++i+++++ + +de + v  +ai+++ ++++ f  +  ++L e 
  KOO22483.1 373 FEKIQQLIKSPDWKHRHAALMSISQSGEGCEMAMKANLQQIVTMIVGHFRDEHPRVRWAAINTVGQMCTDFGPDLQEELHEL 454
                 5788999************************9************************************99988877777665 PP

  == domain 3  score: 0.9 bits;  conditional E-value: 0.52
     RTP1_C1   5 lkdlqdpllpvrahglvlLrkliekkske..avldiekilkllleaLkde 52 
                 l++ +dp + vr  +++ L  l+   +     ++++++ +++l+e  + e
  KOO22483.1 932 LQYARDPKPEVRQAAVYGLGVLAACDNGAafGAAQQQQAAQVLIEVFEAE 981
                 78899***********9999988766654556667777777777766644 PP

>> RIX1  rRNA processing/ribosome biogenesis
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.2   0.1      0.72   7.2e+02      32     118 ..     210     298 ..     179     312 .. 0.73
   2 !    9.4   0.0   0.00083      0.82       7      74 ..     378     441 ..     373     455 .. 0.88
   3 ?    0.1   0.0      0.58   5.8e+02      42      96 ..     493     547 ..     467     568 .. 0.59
   4 ?    0.4   0.0      0.48   4.8e+02      59     117 ..     682     740 ..     614     794 .. 0.72

  Alignments for each domain:
  == domain 1  score: -0.2 bits;  conditional E-value: 0.72
        RIX1  32 eellkselee.lvhklvtrilsLlqskspegrwaGvcLakvtveesgeellssgstWlrallsiLekpdp.pavlelaistlsriftlt 118
                 +++ + ++ + lv      i + l s ++e++  ++ +   ++e+ ++ l ++  + ++++++i ++ +  +a+ +la++ l ++ +++
  KOO22483.1 210 QSADTRNHFQeLVPLMQQAIAQALTSGEEESCRSALEVFVEIAESQPKFLKRHLHEAVNGMVAIASNTSLeDATRHLALEFLLTVAENM 298
                 44444333336666677888888999999999999999999999999999999999999999988888434777777777777666654 PP

  == domain 2  score: 9.4 bits;  conditional E-value: 0.00083
        RIX1   7 nrLsstppkelpsilstlashkllceellkseleelvhklvtrilsLlqskspegrwaGvcLakvtve 74 
                 + ++s + k+ +++l ++++++  ce + k++l++     vt i    +++ p+ rwa+++ ++ +++
  KOO22483.1 378 QLIKSPDWKHRHAALMSISQSGEGCEMAMKANLQQ----IVTMIVGHFRDEHPRVRWAAINTVGQMCT 441
                 56666677888899999**************9999....************************99997 PP

  == domain 3  score: 0.1 bits;  conditional E-value: 0.58
        RIX1  42 lvhklvtrilsLlqskspegrwaGvcLakvtveesgeellssgstWlrallsiLe 96 
                  +  l  ++  Llq +  +    +v+ +  ++++  e ++ ++++++ +l +iL+
  KOO22483.1 493 YLPDLLGKLMVLLQRNVRRVTEQAVTAIASVADVAEEDFAPYYGSFMPGLKQILQ 547
                 3333445555555555555555555666666665566666666666666666655 PP

  == domain 4  score: 0.4 bits;  conditional E-value: 0.48
        RIX1  59 pegrwaGvcLakvtveesgeellssgstWlrallsiLekpdppavlelaistlsriftl 117
                  e++ ++++++++ + e ++ ++ + +  +r l++++  +  + v + a++++ ++++ 
  KOO22483.1 682 LEEKATACHMLRTYALELKDAFFPHVADVARVLVPLIGFQYMDEVRVNACHAMPDLLDS 740
                 36678999999999999999999999999999999999998888999999998777764 PP

>> DUF3385  Domain of unknown function (DUF3385)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.1   0.0      0.75   7.5e+02      13      39 ..      96     122 ..      92     123 .. 0.90
   2 ?   -0.2   0.1      0.83   8.3e+02      10      53 ..     177     225 ..     172     331 .. 0.46
   3 ?    2.0   0.1      0.18   1.8e+02      66     139 ..     434     507 ..     366     526 .. 0.68
   4 ?    2.6   0.0      0.11   1.1e+02      80     140 ..     491     549 ..     458     568 .. 0.73
   5 ?    5.1   0.0     0.019        19     105     135 ..     605     635 ..     581     643 .. 0.86
   6 ?   -1.4   0.0       1.9   1.9e+03      22      46 ..     937     961 ..     917    1006 .. 0.66

  Alignments for each domain:
  == domain 1  score: -0.1 bits;  conditional E-value: 0.75
     DUF3385  13 elLlnilkteqsqsirrevikllGilG 39 
                 + Ll ++++e +++ir++v   +G lG
  KOO22483.1  96 SHLLACIQSEPKKHIRKKVCDAVGQLG 122
                 67999*******************999 PP

  == domain 2  score: -0.2 bits;  conditional E-value: 0.83
     DUF3385  10 qLLelLlnilkteqsqsirrevikll.GilGALDPykhkqveer....a 53 
                 +LLe+  + l+t+q   +r   +k l + l AL     ++  ++     
  KOO22483.1 177 TLLEVFRGSLQTDQPMAVRIAGLKGLaSFLLALQSADTRNHFQElvplM 225
                 5666666666666666666666663313455555555444433322220 PP

  == domain 3  score: 2.0 bits;  conditional E-value: 0.18
     DUF3385  66 tdlsllmvglspsneeyyptvvinaLlrilkdpslsshhaavveaimnifktlglkc.vpfLdqiipallsvirt 139
                 +++ ++ ++  p  +e     v+ aL++ ++d   +  +a++  a++n +++ +      +L+ ++ +l+ ++++
  KOO22483.1 434 NTVGQMCTDFGPDLQEELHELVLPALIATMDDGC-KRVQAHAAAAVINFCEHCSKPTlKRYLPDLLGKLMVLLQR 507
                 4455566666666666666778888888886665.4566666677777777766655456676666666666554 PP

  == domain 4  score: 2.6 bits;  conditional E-value: 0.11
     DUF3385  80 eeyyptvvinaLlrilkdpslsshhaavveaimnifktlglkcvpfLdqiipallsvirtt 140
                 + y p   + +L+ +l +++++   +++v+ai ++    +    p+    +p l ++++ +
  KOO22483.1 491 KRYLPD-LLGKLMVLL-QRNVRRVTEQAVTAIASVADVAEEDFAPYYGSFMPGLKQILQLA 549
                 555555.556677777.555677999999*******9999999********9999998865 PP

  == domain 5  score: 5.1 bits;  conditional E-value: 0.019
     DUF3385 105 aavveaimnifktlglkcvpfLdqiipalls 135
                 + +++a   i+k lg k  p+L+ +ip ll+
  KOO22483.1 605 QFMLQACGRICKCLGEKFSPYLPYVIPPLLR 635
                 557889999*******************997 PP

  == domain 6  score: -1.4 bits;  conditional E-value: 1.9
     DUF3385  22 eqsqsirrevikllGilGALDPykh 46 
                 + + ++r+ ++  lG+l A D    
  KOO22483.1 937 DPKPEVRQAAVYGLGVLAACDNGAA 961
                 4577888888888888888886555 PP

>> TFCD_C  Tubulin folding cofactor D C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.0   0.1      0.64   6.4e+02      61     129 ..      38     118 ..       8     130 .. 0.66
   2 ?    3.3   0.1     0.063        63      57     131 ..     208     314 ..     152     320 .. 0.65
   3 ?    6.3   0.0    0.0075       7.5      77     137 ..     449     509 ..     386     525 .. 0.82
   4 ?   -0.1   0.0       0.7     7e+02      91     137 ..     749     796 ..     697     801 .. 0.64

  Alignments for each domain:
  == domain 1  score: 0.0 bits;  conditional E-value: 0.64
      TFCD_C  61 nspsevfprlvqLLql...........peyresvleGlvvSvGglteslvkassqaLleylkeles.kadeeeleslleel 129
                 +++  +f+ lv++L               +r+sv++  +   G+l   l  a +qaL ++l ++ + + ++   +++++ +
  KOO22483.1  38 ANKDALFSGLVHMLCTnqaeevralcaVLLRKSVMACATQAQGSLISLLSPAVGQALKSHLLACIQsEPKKHIRKKVCDAV 118
                 355567777888874433333322222448888899999999999999999999999888855555577777778888766 PP

  == domain 2  score: 3.3 bits;  conditional E-value: 0.063
      TFCD_C  57 dlnwnspsevfprlvqLL................................qlpeyresvleGlvv..SvGglteslvkassqaLleylkeleskadeee 121
                 +l+ +++++ f++lv+L+                                 l++  ++ + G+v   S  +l + + + + + Ll+  +++ s    ++
  KOO22483.1 208 ALQSADTRNHFQELVPLMqqaiaqaltsgeeescrsalevfveiaesqpkFLKRHLHEAVNGMVAiaSNTSLEDATRHLALEFLLTVAENMTS--AAKK 304
                 336667788888888888666666666666666666666666555555544477778889999877799999****************88887..9999 PP

      TFCD_C 122 leslleelik 131
                 l++++e+ + 
  KOO22483.1 305 LDRFCETTVP 314
                 9***999875 PP

  == domain 3  score: 6.3 bits;  conditional E-value: 0.0075
      TFCD_C  77 peyresvleGlvvSvGglteslvkassqaLleylkeleskadeeeleslleeliklleenk 137
                 +e+ e vl  l+ +++ + + ++ ++++a +++++++++ + ++ l +ll++l+ ll++n 
  KOO22483.1 449 EELHELVLPALIATMDDGCKRVQAHAAAAVINFCEHCSKPTLKRYLPDLLGKLMVLLQRNV 509
                 56777789999***********************9999988999999**********9985 PP

  == domain 4  score: -0.1 bits;  conditional E-value: 0.7
      TFCD_C  91 vGglteslvkassqaLleyl.keleskadeeeleslleeliklleenk 137
                 + + t ++v+  ++ L++++ ++l+++ d+e+l +ll+   ++ +  +
  KOO22483.1 749 APSATPDVVHQLKGYLYKAViDQLHKEPDTETLAELLTAWCEIIKHGE 796
                 445566666666666666654555567777777777777777776655 PP

>> Cohesin_HEAT  HEAT repeat associated with sister chromatid cohesion
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.7   0.0    0.0092       9.1      18      42 .]     412     436 ..     409     436 .. 0.88
   2 ?    4.6   0.0     0.041        41      27      39 ..     935     947 ..     932     947 .. 0.90

  Alignments for each domain:
  == domain 1  score: 6.7 bits;  conditional E-value: 0.0092
                   HHHHHHHHHHHSS-HHHHHHHHHHH CS
  Cohesin_HEAT  18 evldtiarrltDsspsVRdAaLell 42 
                   ++  +i  +++D+ p VR Aa+ ++
    KOO22483.1 412 QIVTMIVGHFRDEHPRVRWAAINTV 436
                   67788999*************9986 PP

  == domain 2  score: 4.6 bits;  conditional E-value: 0.041
                   HHSS-HHHHHHHH CS
  Cohesin_HEAT  27 ltDsspsVRdAaL 39 
                   ++D++p VR Aa+
    KOO22483.1 935 ARDPKPEVRQAAV 947
                   89*********98 PP

>> IBN_N  Importin-beta N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.1   0.00045      0.44       1      73 [.      29     119 ..      29     120 .. 0.85
   2 ?    0.3   0.0      0.69   6.8e+02      13      36 ..     265     288 ..     252     293 .. 0.77

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00045
                 HHHHHHHHHCSTCHHHHHHHHHHCTTSHHHHHHHHHHHHHHHHHHHGGSCCCHC....................GSXHHHHHHHHHHHHHHHH CS
       IBN_N   1 AekqLkqlekqpgflsallqilanseselevRqlAalyLknlitkhWsdeeekq....................slpseekeqIrnnllnllg 73 
                 Ae++ +q++ + ++l + l  +  ++  +evR l a++L++++ +    +++++                    +++se k++Ir ++ +++g
  KOO22483.1  29 AEEAFEQAKANKDALFSGLVHMLCTNQAEEVRALCAVLLRKSVMAC--ATQAQGslisllspavgqalkshllaCIQSEPKKHIRKKVCDAVG 119
                 89999999998887776655555555555*****************..77888899**9999999999999**************99988776 PP

  == domain 2  score: 0.3 bits;  conditional E-value: 0.69
                 CHHHHHHHHHHCTTSHHHHHHHHH CS
       IBN_N  13 gflsallqilanseselevRqlAa 36 
                 ++++  + i++n+++e  +R+lA+
  KOO22483.1 265 EAVNGMVAIASNTSLEDATRHLAL 288
                 555666789999999999999997 PP

>> HEAT_PBS  PBS lyase HEAT-like repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.6   0.0      0.31     3e+02       1      23 [.     428     461 ..     428     465 .. 0.76
   2 ?    7.4   1.0    0.0083       8.2       1      26 [.     942     979 ..     942     980 .. 0.95
   3 ?    0.7   0.1       1.3   1.2e+03       5      15 ..     995    1007 ..     993    1021 .. 0.67

  Alignments for each domain:
  == domain 1  score: 2.6 bits;  conditional E-value: 0.31
                 HHHHHHHHHHHCTS...........GGGHHHHHH CS
    HEAT_PBS   1 vRraAakaLgqlgd...........eeaipaLle 23 
                 vR+aA+   gq+ +           e ++paL++
  KOO22483.1 428 VRWAAINTVGQMCTdfgpdlqeelhELVLPALIA 461
                 9***********9988877776666666666665 PP

  == domain 2  score: 7.4 bits;  conditional E-value: 0.0083
                 HHHHHHHHHHHCTS............GGGHHHHHHHCT CS
    HEAT_PBS   1 vRraAakaLgqlgd............eeaipaLleaLq 26 
                 vR aA+++Lg l +            ++a+++L+e+ +
  KOO22483.1 942 VRQAAVYGLGVLAAcdngaafgaaqqQQAAQVLIEVFE 979
                 8*********************************9875 PP

  == domain 3  score: 0.7 bits;  conditional E-value: 1.3
                  HHHHHHHCTS..G CS
    HEAT_PBS    5 AakaLgqlgd..e 15  
                  A+ aLg+l +  +
  KOO22483.1  995 AVSALGKLCArtP 1007
                  8888888877542 PP

>> Arm  Armadillo/beta-catenin-like repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.1       3.4   3.4e+03      18      32 ..      15      29 ..       7      29 .. 0.83
   2 ?   -2.6   0.1       6.6   6.6e+03      17      34 ..      47      65 ..      46      68 .. 0.76
   3 ?   -0.7   0.0       1.6   1.6e+03      16      39 ..      97     121 ..      96     122 .. 0.88
   4 ?    4.7   0.1     0.034        34      13      36 ..     455     478 ..     453     483 .. 0.91
   5 ?    0.2   0.0       0.9   8.9e+02      15      37 ..     499     521 ..     490     525 .. 0.79
   6 ?   -1.1   0.0       2.3   2.3e+03       6      22 ..     849     865 ..     846     868 .. 0.86
   7 ?    3.2   0.0       0.1     1e+02      14      41 .]     928     955 ..     927     955 .. 0.91
   8 ?   -0.8   0.1       1.7   1.7e+03      31      41 .]     994    1004 ..     985    1004 .. 0.83

  Alignments for each domain:
  == domain 1  score: -1.7 bits;  conditional E-value: 3.4
                HHHTTTSSHHHHHHH CS
         Arm 18 vrLLssedeevqeeA 32
                ++ L s+d +++++A
  KOO22483.1 15 LQALLSQDNSIRRQA 29
                56677********98 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 6.6
                HHHHTT.TSSHHHHHHHHH CS
         Arm 17 LvrLLs.sedeevqeeAaw 34
                Lv++L  ++ eev+  +a 
  KOO22483.1 47 LVHMLCtNQAEEVRALCAV 65
                8999998999999876665 PP

  == domain 3  score: -0.7 bits;  conditional E-value: 1.6
                 HHHHHTT.TSSHHHHHHHHHHHHHH CS
         Arm  16 pLvrLLs.sedeevqeeAawALsNL 39 
                 +L+++++  ++  +++ ++ A++ L
  KOO22483.1  97 HLLACIQsEPKKHIRKKVCDAVGQL 121
                 7999999999999999999999865 PP

  == domain 4  score: 4.7 bits;  conditional E-value: 0.034
                 HHHHHHHHTTTSSHHHHHHHHHHH CS
         Arm  13 avppLvrLLssedeevqeeAawAL 36 
                 ++p+L++ ++++  +vq  Aa+A+
  KOO22483.1 455 VLPALIATMDDGCKRVQAHAAAAV 478
                 79*******************997 PP

  == domain 5  score: 0.2 bits;  conditional E-value: 0.9
                 HHHHHHTTTSSHHHHHHHHHHHH CS
         Arm  15 ppLvrLLssedeevqeeAawALs 37 
                   L+ LL+    +v+e+A++A++
  KOO22483.1 499 GKLMVLLQRNVRRVTEQAVTAIA 521
                 5688888888889********97 PP

  == domain 6  score: -1.1 bits;  conditional E-value: 2.3
                 HHHHHTTHHHHHHHHTT CS
         Arm   6 davieaGavppLvrLLs 22 
                 da+ + + +  Lv++L 
  KOO22483.1 849 DAINDENLISTLVECLG 865
                 788899999****9995 PP

  == domain 7  score: 3.2 bits;  conditional E-value: 0.1
                 HHHHHHHTTTSSHHHHHHHHHHHHHHTT CS
         Arm  14 vppLvrLLssedeevqeeAawALsNLaa 41 
                 +p+ ++  +++++ev+++A+  L+ Laa
  KOO22483.1 928 LPAYLQYARDPKPEVRQAAVYGLGVLAA 955
                 799999999*************999985 PP

  == domain 8  score: -0.8 bits;  conditional E-value: 1.7
                  HHHHHHHHHTT CS
         Arm   31 eAawALsNLaa 41  
                  +A++AL+ L+a
  KOO22483.1  994 NAVSALGKLCA 1004
                  99*****9996 PP

>> CLASP_N  CLASP N terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.4       1.4   1.4e+03      89     158 ..       4      71 ..       2      95 .. 0.74
   2 ?   -0.1   0.2      0.56   5.5e+02       7     106 ..     177     277 ..     174     310 .. 0.77
   3 ?    7.6   0.0    0.0025       2.5      56     129 ..     415     488 ..     381     500 .. 0.76
   4 ?    2.8   0.0     0.072        72      71     124 ..     686     740 ..     673     746 .. 0.85
   5 ?   -3.4   0.0       5.9   5.9e+03     186     196 ..     936     946 ..     920     946 .. 0.77

  Alignments for each domain:
  == domain 1  score: -1.4 bits;  conditional E-value: 1.4
     CLASP_N  89 dpmveillptLlkllgdtKkiisqnanqalaallsnasfspri.lqvlsvalqdKnvqpReysaiwLkill 158
                 d+++ + ++++l+ l ++ + i+ +a+ a+++  +n      +   ++ +++++   + R+ +a +L+  +
  KOO22483.1   4 DASMLQQFEMMLQALLSQDNSIRRQAEEAFEQAKANKD---ALfSGLVHMLCTNQAEEVRALCAVLLRKSV 71 
                 66666777888888888888888899988887666655...444778888888888888888888887655 PP

  == domain 2  score: -0.1 bits;  conditional E-value: 0.56
     CLASP_N   7 ellaafeg.ketelnwdaReknilklrslikgnvpedaveelleclkqlleailkalssLrttlsstgchllkelaiqlkeqldpmveillptLlkllg 104
                 +ll++f g  +t++ +  R + +  l s +    + d  +++ e++  +++ai++al+s     +  +++++ e+a+   + l+  ++  ++ ++   +
  KOO22483.1 177 TLLEVFRGsLQTDQPMAVRIAGLKGLASFLLALQSADTRNHFQELVPLMQQAIAQALTSGEEESCRSALEVFVEIAESQPKFLKRHLHEAVNGMVAIAS 275
                 678888887789999999999999999999988889999999999998899999999998888888888888888877777677777766666666666 PP

     CLASP_N 105 dt 106
                 +t
  KOO22483.1 276 NT 277
                 55 PP

  == domain 3  score: 7.6 bits;  conditional E-value: 0.0025
     CLASP_N  56 eailkalssLrttlsstgchllkelaiqlkeqldpm.veillptLlkllgdtKkiisqnanqalaallsnasfsp 129
                  +i+ ++ +    +  +++ ++ +++  ++++l++   e +lp L+  + d  k++ + a++a+  +++++s +p
  KOO22483.1 415 TMIVGHFRDEHPRVRWAAINTVGQMCTDFGPDLQEElHELVLPALIATMDDGCKRVQAHAAAAVINFCEHCS-KP 488
                 55555555555555567788888999999999766549999*****************************99.44 PP

  == domain 4  score: 2.8 bits;  conditional E-value: 0.072
     CLASP_N  71 stgchllkelaiqlkeqldpmveillptLlkllgdt.Kkiisqnanqalaallsn 124
                 +t+ch+l+  a +lk+++ p v  +  +L+ l+g +  + ++ na +a+ +ll +
  KOO22483.1 686 ATACHMLRTYALELKDAFFPHVADVARVLVPLIGFQyMDEVRVNACHAMPDLLDS 740
                 589******************999********99763577888888888777765 PP

  == domain 5  score: -3.4 bits;  conditional E-value: 5.9
     CLASP_N 186 eDanptVReta 196
                  D++p+VR++a
  KOO22483.1 936 RDPKPEVRQAA 946
                 7*******986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1121 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       780  (0.0435049); expected 358.6 (0.02)
Passed bias filter:                      570  (0.0317921); expected 358.6 (0.02)
Passed Vit filter:                        64  (0.00356964); expected 17.9 (0.001)
Passed Fwd filter:                        20  (0.00111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              18  [number of targets reported over threshold]
# CPU time: 0.92u 0.33s 00:00:01.25 Elapsed: 00:00:00.48
# Mc/sec: 7068.99
//
Query:       KOO22484.1  [L=244]
Description: hypothetical protein Ctob_000314 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (244 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1982  (0.110547); expected 358.6 (0.02)
Passed bias filter:                      540  (0.0301188); expected 358.6 (0.02)
Passed Vit filter:                        50  (0.00278878); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.61u 0.31s 00:00:00.92 Elapsed: 00:00:00.45
# Mc/sec: 1646.12
//
Query:       KOO22485.1  [L=642]
Description: putative calcium-binding protein cml16-like protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      6e-17   60.1   0.0      0.022   14.7   0.0    4.7  4  EF-hand_6        EF-hand domain
    8.2e-15   53.2   0.1     0.0075   15.7   0.0    4.7  4  EF-hand_1        EF hand
    1.3e-14   54.4   0.1    8.9e-06   26.1   0.0    3.2  2  EF-hand_7        EF-hand domain pair
    7.2e-12   45.0   0.1     0.0023   17.8   0.0    3.7  3  EF-hand_8        EF-hand domain pair
    1.1e-06   27.8   0.7        3.6    7.2   0.0    4.7  4  EF-hand_5        EF hand
  ------ inclusion threshold ------
        2.3    7.9   4.3         10    5.8   0.1    4.0  4  Thymopoietin     Thymopoietin protein


Domain annotation for each model (and alignments):
>> EF-hand_6  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.3   0.0   4.2e-05      0.13       2      31 .]     198     226 ..     197     226 .. 0.90
   2 !   14.7   0.0   7.4e-06     0.022       2      27 ..     234     259 ..     233     263 .. 0.87
   3 !   12.7   0.0   3.2e-05     0.097       3      26 ..     284     307 ..     282     311 .. 0.90
   4 !   14.6   0.0   7.9e-06     0.023       4      28 ..     321     345 ..     318     353 .. 0.90

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 4.2e-05
   EF-hand_6   2 lreaFklfDkdgdGkidaeElrkalrkalg 31 
                 + ++F+l+D + d  i++ Elr+a+  +lg
  KOO22485.1 198 VIDLFRLWDINSDMRISRPELRRAFD-ELG 226
                 5799********************98.665 PP

  == domain 2  score: 14.7 bits;  conditional E-value: 7.4e-06
   EF-hand_6   2 lreaFklfDkdgdGkidaeElrkalr 27 
                 l+++F +fD++g+ +id+ E+ + lr
  KOO22485.1 234 LDALFTAFDVNGNQYIDYPEMHNRLR 259
                 6789**************99877665 PP

  == domain 3  score: 12.7 bits;  conditional E-value: 3.2e-05
   EF-hand_6   3 reaFklfDkdgdGkidaeElrkal 26 
                  + F+++D +gdG i++ E+r al
  KOO22485.1 284 IDMFRKWDASGDGRIHQVEVRCAL 307
                 689*****************9998 PP

  == domain 4  score: 14.6 bits;  conditional E-value: 7.9e-06
   EF-hand_6   4 eaFklfDkdgdGkidaeElrkalrk 28 
                 ++Fk +D dg G+i ++E+ k+l++
  KOO22485.1 321 SLFKVLDLDGYGSIEYNEMYKVLKR 345
                 79*********************95 PP

>> EF-hand_1  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.2   0.0   7.3e-05      0.22       3      27 ..     199     223 ..     197     225 .. 0.89
   2 !   15.7   0.0   2.5e-06    0.0075       2      27 ..     234     259 ..     233     260 .. 0.88
   3 !   10.2   0.0   0.00015      0.45       2      24 ..     283     305 ..     282     307 .. 0.84
   4 !   10.5   0.0   0.00012      0.36       2      28 ..     319     345 ..     318     346 .. 0.91

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 7.3e-05
                 HHHHHHHTTTSSSEEEHHHHHHHHH CS
   EF-hand_1   3 keiFrefDkDgdGkIdfeEfkellk 27 
                  ++Fr+ D + d +I++ E+++++ 
  KOO22485.1 199 IDLFRLWDINSDMRISRPELRRAFD 223
                 589******************9985 PP

  == domain 2  score: 15.7 bits;  conditional E-value: 2.5e-06
                 HHHHHHHHTTTSSSEEEHHHHHHHHH CS
   EF-hand_1   2 lkeiFrefDkDgdGkIdfeEfkellk 27 
                 l+ +F  fD++g+ +Id+ E+ + l+
  KOO22485.1 234 LDALFTAFDVNGNQYIDYPEMHNRLR 259
                 7899****************987665 PP

  == domain 3  score: 10.2 bits;  conditional E-value: 0.00015
                 HHHHHHHHTTTSSSEEEHHHHHH CS
   EF-hand_1   2 lkeiFrefDkDgdGkIdfeEfke 24 
                 + ++Fr+ D  gdG+I   E + 
  KOO22485.1 283 VIDMFRKWDASGDGRIHQVEVRC 305
                 679*************8888776 PP

  == domain 4  score: 10.5 bits;  conditional E-value: 0.00012
                 HHHHHHHHTTTSSSEEEHHHHHHHHHH CS
   EF-hand_1   2 lkeiFrefDkDgdGkIdfeEfkellkk 28 
                 +  +F+++D Dg G I+++E+ ++lk+
  KOO22485.1 319 VSSLFKVLDLDGYGSIEYNEMYKVLKR 345
                 6789*******************9997 PP

>> EF-hand_7  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.7   0.0   7.9e-09   2.4e-05       6      68 ..     200     256 ..     195     259 .. 0.93
   2 !   26.1   0.0     3e-09   8.9e-06       5      69 ..     284     342 ..     281     344 .. 0.92

  Alignments for each domain:
  == domain 1  score: 24.7 bits;  conditional E-value: 7.9e-09
   EF-hand_7   6 eaFkelDtdgdgyldkeellrllrkifqgagegsklsdeelellfkefDtdkdGvisfdEFlk 68 
                 + F++ D + d ++++ el+r++       + g++++  +l++lf  fD +++ +i++ E+++
  KOO22485.1 200 DLFRLWDINSDMRISRPELRRAFD------ELGFEIPGGALDALFTAFDVNGNQYIDYPEMHN 256
                 78******************9999......******************************987 PP

  == domain 2  score: 26.1 bits;  conditional E-value: 3e-09
   EF-hand_7   5 keaFkelDtdgdgyldkeellrllrkifqgagegsklsdeelellfkefDtdkdGvisfdEFlkl 69 
                  ++F++ D  gdg++ + e++++l         g + + +e+  lfk +D+d+ G+i ++E++k 
  KOO22485.1 284 IDMFRKWDASGDGRIHQVEVRCALL------WLGYEATTDEVSSLFKVLDLDGYGSIEYNEMYKV 342
                 579**********************......7888888999*********************987 PP

>> EF-hand_8  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5   0.0   9.4e-07    0.0028       2      52 ..     210     258 ..     209     260 .. 0.94
   2 !    5.6   0.0    0.0048        14      30      46 ..     285     301 ..     278     307 .. 0.87
   3 !   17.8   0.0   7.6e-07    0.0023      17      54 ..     310     345 ..     302     346 .. 0.87

  Alignments for each domain:
  == domain 1  score: 17.5 bits;  conditional E-value: 9.4e-07
   EF-hand_8   2 kgkItreelrrilrilglkkglseeevdilfrefDtdgdGkisfeEFcvll 52 
                 ++ I+r elrr+   lg +  +   ++d+lf +fD +g+ +i++ E +++l
  KOO22485.1 210 DMRISRPELRRAFDELGFE--IPGGALDALFTAFDVNGNQYIDYPEMHNRL 258
                 899********99999999..**************************9987 PP

  == domain 2  score: 5.6 bits;  conditional E-value: 0.0048
   EF-hand_8  30 ilfrefDtdgdGkisfe 46 
                 ++fr+ D  gdG+i++ 
  KOO22485.1 285 DMFRKWDASGDGRIHQV 301
                 7*************985 PP

  == domain 3  score: 17.8 bits;  conditional E-value: 7.6e-07
   EF-hand_8  17 lglkkglseeevdilfrefDtdgdGkisfeEFcvller 54 
                 lg++   + +ev +lf+ +D+dg G i ++E + +l+r
  KOO22485.1 310 LGYE--ATTDEVSSLFKVLDLDGYGSIEYNEMYKVLKR 345
                 5888..899**********************9999887 PP

>> EF-hand_5  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.6   0.0    0.0081        24       3      23 ..     200     220 ..     198     222 .. 0.88
   2 !    4.5   0.0    0.0091        27       1      13 [.     234     246 ..     234     255 .. 0.86
   3 !    5.9   0.1    0.0032       9.6       2      16 ..     284     298 ..     283     298 .. 0.92
   4 !    7.2   0.0    0.0012       3.6       4      24 ..     322     342 ..     319     343 .. 0.91

  Alignments for each domain:
  == domain 1  score: 4.6 bits;  conditional E-value: 0.0081
                 HHHHHH-SS-SSCE-HHHHHH CS
   EF-hand_5   3 dtFqaiDlNgDGkIskeELkt 23 
                 d+F+  D N D +Is+ EL++
  KOO22485.1 200 DLFRLWDINSDMRISRPELRR 220
                 789999*************98 PP

  == domain 2  score: 4.5 bits;  conditional E-value: 0.0091
                 HHHHHHHH-SS-S CS
   EF-hand_5   1 lkdtFqaiDlNgD 13 
                 l+++F a+D+Ng 
  KOO22485.1 234 LDALFTAFDVNGN 246
                 6889*******96 PP

  == domain 3  score: 5.9 bits;  conditional E-value: 0.0032
                 HHHHHHH-SS-SSCE CS
   EF-hand_5   2 kdtFqaiDlNgDGkI 16 
                  d+F++ D+ gDG+I
  KOO22485.1 284 IDMFRKWDASGDGRI 298
                 589***********9 PP

  == domain 4  score: 7.2 bits;  conditional E-value: 0.0012
                 HHHHH-SS-SSCE-HHHHHHH CS
   EF-hand_5   4 tFqaiDlNgDGkIskeELktl 24 
                 +F+ +Dl+g G I   E +++
  KOO22485.1 322 LFKVLDLDGYGSIEYNEMYKV 342
                 7*****************997 PP

>> Thymopoietin  Thymopoietin protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.0      0.71   2.1e+03      19      31 ..     123     135 ..     120     136 .. 0.85
   2 ?   -1.6   0.1       0.7   2.1e+03      12      26 ..     426     440 ..     413     441 .. 0.71
   3 ?   -0.1   0.1      0.25   7.4e+02      13      22 ..     466     475 ..     462     485 .. 0.84
   4 ?    5.8   0.1    0.0035        10      12      27 ..     489     504 ..     480     509 .. 0.85

  Alignments for each domain:
  == domain 1  score: -1.6 bits;  conditional E-value: 0.71
  Thymopoietin  19 LvahnVaLPpges 31 
                   L++ +V+L+++e 
    KOO22485.1 123 LLSTQVELQEAEL 135
                   8999******985 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 0.7
  Thymopoietin  12 KdrLKSeLvahnVaL 26 
                   K+ L +eL+++n +L
    KOO22485.1 426 KQHLLAELMSENAQL 440
                   556899999999776 PP

  == domain 3  score: -0.1 bits;  conditional E-value: 0.25
  Thymopoietin  13 drLKSeLvah 22 
                   ++L+SeL+ +
    KOO22485.1 466 EQLRSELLRE 475
                   89*****965 PP

  == domain 4  score: 5.8 bits;  conditional E-value: 0.0035
  Thymopoietin  12 KdrLKSeLvahnVaLP 27 
                    ++L+SeL+++n +L 
    KOO22485.1 489 IEQLRSELMSENAQLK 504
                   59**********9996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (642 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2530  (0.141112); expected 358.6 (0.02)
Passed bias filter:                      551  (0.0307323); expected 358.6 (0.02)
Passed Vit filter:                       123  (0.00686039); expected 17.9 (0.001)
Passed Fwd filter:                        53  (0.0029561); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 1.29u 0.30s 00:00:01.59 Elapsed: 00:00:00.50
# Mc/sec: 3839.13
//
Query:       KOO22486.1  [L=79]
Description: hypothetical protein Ctob_000312 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (79 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       211  (0.0117686); expected 358.6 (0.02)
Passed bias filter:                      197  (0.0109878); expected 358.6 (0.02)
Passed Vit filter:                         7  (0.000390429); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.24s 00:00:00.58 Elapsed: 00:00:00.39
# Mc/sec: 604.82
//
Query:       KOO22487.1  [L=515]
Description: fam188a-like protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.9e-46  157.6   0.0    7.3e-45  153.4   0.0    2.3  2  DUF4205         Domain of unknown function (DUF4205)
  ------ inclusion threshold ------
      0.011   15.3   0.0      0.054   13.1   0.0    2.2  3  EF-hand_1       EF hand
      0.016   15.5   0.0      0.046   14.0   0.0    1.8  1  EF-hand_9       EF-hand domain
      0.043   13.7   0.0        0.2   11.6   0.0    2.1  3  EF-hand_6       EF-hand domain
      0.084   13.2   1.0        1.3    9.5   0.0    2.8  2  GHMP_kinases_C  GHMP kinases C terminal


Domain annotation for each model (and alignments):
>> DUF4205  Domain of unknown function (DUF4205)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  153.4   0.0     2e-48   7.3e-45       2     275 ..      47     361 ..      46     369 .. 0.84
   2 ?    1.5   0.0     0.033   1.2e+02     327     347 .]     488     509 ..     446     509 .. 0.59

  Alignments for each domain:
  == domain 1  score: 153.4 bits;  conditional E-value: 2e-48
     DUF4205   2 kllFgsaaavf.sseWkkqgfifrepeed.....laY..gLvqkkggprgvlaavqafvlkkLLfe.k.............ekkaalekllkpskeeqe 78 
                 +++Fg+a a+    +W+ qgf++++++ +     +++  gL q +ggp++vlaa qaf+l+ LLf+ +             ++ aa    l ps++e  
  KOO22487.1  47 RIIFGDAPAPEvARQWRMQGFTLADVDVSdapgvTPFgaGLAQINGGPCAVLAAAQAFMLRRLLFSgDdpagppmplptwlDEAAAGGGSLLPSETEAG 145
                 689***99987699*********99753212222455337**************************659***********9999999999********* PP

     DUF4205  79 eaLvaalaeiLwrage.................kekatvalpseekvvapsk.....dykadglteklqlfev..tskedlekflkrhislfkeeggsg 153
                 eaL  +la+ L ++++                  +++ v+l   +  + +++     + ++++l+  l+ + +  t+ +++ ++l++  +     ++ g
  KOO22487.1 146 EALLRGLADALVACATtpsaaamaaagggatlaPTPCQVVLAVPTAAMLEESwmqdeRGANPELLGALVAHAArpTTWHATLEALRARRHGL--ASPLG 242
                 **************999************999844455555555444443331111144445555555444431144555666666666666..7789* PP

     DUF4205 154 villlySlilsrglekiredldeptssLlg.aheectqelvnLlLtGravsnvfngvvelddedkealplkGilsrseiGlLslfehyevlqvGsrLKt 251
                 ++ +l+S++l+rg+ + +e+ d+p++ Ll+ + ++c+qe++nLlL G  vsnvf+g ++l+++     +l+G+  r ++GlLs  e++ +lqvGs +K+
  KOO22487.1 243 ALGFLVSALLTRGVGRFSEERDDPSQPLLDpQFGHCSQEVLNLLLLGVGVSNVFDGSRDLGGG----FMLRGVPLRPPVGLLSELEALRYLQVGSFFKQ 337
                 ******************************999******************************....9***************99************** PP

     DUF4205 252 PklpIWvvcseshysVLFstnrel 275
                 P  pIWvv seshys+LF++++++
  KOO22487.1 338 PVHPIWVVASESHYSILFALTTRV 361
                 ******************998765 PP

  == domain 2  score: 1.5 bits;  conditional E-value: 0.033
     DUF4205 327 ipp.leklirTkWqeakvdwng 347
                  p  l  +i T+W++a v+ +g
  KOO22487.1 488 APQgLASIIATRWKDALVTHEG 509
                 3335999*********998765 PP

>> EF-hand_1  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.1       2.1   7.4e+03       9      15 ..      20      26 ..      20      26 .. 0.94
   2 ?   13.1   0.0   1.5e-05     0.054       3      28 ..     375     400 ..     373     401 .. 0.88
   3 ?   -2.6   0.0       1.5   5.3e+03       9      27 ..     416     434 ..     410     435 .. 0.83

  Alignments for each domain:
  == domain 1  score: -3.0 bits;  conditional E-value: 2.1
                HTTTSSS CS
   EF-hand_1  9 fDkDgdG 15
                fD  gdG
  KOO22487.1 20 FDPEGDG 26
                8*****9 PP

  == domain 2  score: 13.1 bits;  conditional E-value: 1.5e-05
                 HHHHHHHTTTSSSEEEHHHHHHHHHH CS
   EF-hand_1   3 keiFrefDkDgdGkIdfeEfkellkk 28 
                   +F+e+D+ g+G+++ e + +l+++
  KOO22487.1 375 LAAFSELDQEGNGFVSGEHLGTLVAA 400
                 579***************99998876 PP

  == domain 3  score: -2.6 bits;  conditional E-value: 1.5
                 HTTTSSSEEEHHHHHHHHH CS
   EF-hand_1   9 fDkDgdGkIdfeEfkellk 27 
                 +D  g+  I ++ f+++++
  KOO22487.1 416 LDPEGTSLILWDHFQRIMM 434
                 6888888888999999996 PP

>> EF-hand_9  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.0   1.3e-05     0.046      33      63 ..     405     434 ..     376     436 .. 0.71

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 1.3e-05
   EF-hand_9  33 eeseLeelakelDPdgedasvdldtflrvmr 63 
                 +   L++l  +lDP+g   ++  d f+r+m+
  KOO22487.1 405 QAPPLDKLRTQLDPEGT-SLILWDHFQRIMM 434
                 34479************.************8 PP

>> EF-hand_6  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.0       3.1   1.1e+04       9      18 ..      20      31 ..      20      37 .. 0.72
   2 ?   11.6   0.0   5.7e-05       0.2       2      24 ..     374     396 ..     373     401 .. 0.87
   3 ?   -3.4   0.0       3.8   1.4e+04       9      26 ..     416     433 ..     415     435 .. 0.80

  Alignments for each domain:
  == domain 1  score: -3.1 bits;  conditional E-value: 3.1
   EF-hand_6  9 fDkdgdG..kid 18
                fD +gdG   +d
  KOO22487.1 20 FDPEGDGisRLD 31
                899999955555 PP

  == domain 2  score: 11.6 bits;  conditional E-value: 5.7e-05
   EF-hand_6   2 lreaFklfDkdgdGkidaeElrk 24 
                 l +aF ++D++g+G+++ e l  
  KOO22487.1 374 LLAAFSELDQEGNGFVSGEHLGT 396
                 779**************998875 PP

  == domain 3  score: -3.4 bits;  conditional E-value: 3.8
   EF-hand_6   9 fDkdgdGkidaeElrkal 26 
                 +D +g+  i ++ +++++
  KOO22487.1 416 LDPEGTSLILWDHFQRIM 433
                 688888888899999987 PP

>> GHMP_kinases_C  GHMP kinases C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.4   0.7      0.24   8.6e+02      39      62 ..     156     177 ..     135     178 .. 0.77
   2 ?    9.5   0.0   0.00035       1.3      28      67 ..     366     404 ..     348     419 .. 0.81

  Alignments for each domain:
  == domain 1  score: 0.4 bits;  conditional E-value: 0.24
  GHMP_kinases_C  39 llealselGalgaklsGaGgGptv 62 
                     l+ ++  +   +a +  aGgG+t+
      KOO22487.1 156 LVACATTPS--AAAMAAAGGGATL 177
                     444445555..99*********98 PP

  == domain 2  score: 9.5 bits;  conditional E-value: 0.00035
  GHMP_kinases_C  28 vvgilppeleellealselGalgaklsGaGgGptvfalf.k 67 
                      ++ l ++l ++ ++l + G   +++sG ++G+ v+al  +
      KOO22487.1 366 ARAALEERLLAAFSELDQEG--NGFVSGEHLGTLVAALPqW 404
                     56788899999999999999..***************9854 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (515 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       391  (0.0218082); expected 358.6 (0.02)
Passed bias filter:                      286  (0.0159518); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.49u 0.24s 00:00:00.73 Elapsed: 00:00:00.38
# Mc/sec: 4077.79
//
Query:       KOO22488.1  [L=166]
Description: hypothetical protein Ctob_000310 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.8e-06   27.7   0.0    3.2e-06   26.8   0.0    1.5  2  COX5B     Cytochrome c oxidase subunit Vb


Domain annotation for each model (and alignments):
>> COX5B  Cytochrome c oxidase subunit Vb
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.8   0.0   1.8e-10   3.2e-06      27      89 ..      31      90 ..       7     114 .. 0.83
   2 ?   -3.7   0.0      0.51   9.1e+03      95     103 ..     137     145 ..     134     148 .. 0.79

  Alignments for each domain:
  == domain 1  score: 26.8 bits;  conditional E-value: 1.8e-10
       COX5B 27 egtvPtdleqatGleRlellgkleGidvfdmk.PldasrkGtledPilvesydderyvGctGsp 89
                +g +  + + atG+e+ e+ g     d+f ++ P+ +  +Gt+e+P +v+s++ +r+vG    +
  KOO22488.1 31 SGVIVDNEDMATGMEKKEIEGTA---DIFWSRePI-MGPRGTKENPAIVPSFNTSRVVGLETEQ 90
                5677778999********98875...7886666**.9999*******************87655 PP

  == domain 2  score: -3.7 bits;  conditional E-value: 0.51
       COX5B  95 viWlkveke 103
                 viW+k+ek+
  KOO22488.1 137 VIWFKLEKG 145
                 899999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (166 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       323  (0.0180155); expected 358.6 (0.02)
Passed bias filter:                      261  (0.0145574); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.23s 00:00:00.62 Elapsed: 00:00:00.40
# Mc/sec: 1247.21
//
Query:       KOO22489.1  [L=274]
Description: soh1-like protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.6e-14   53.4   0.0    3.8e-14   52.8   0.0    1.2  1  zf-ZPR1   ZPR1 zinc-finger domain


Domain annotation for each model (and alignments):
>> zf-ZPR1  ZPR1 zinc-finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.8   0.0   2.1e-18   3.8e-14      55     157 ..     150     255 ..     142     257 .. 0.89

  Alignments for each domain:
  == domain 1  score: 52.8 bits;  conditional E-value: 2.1e-18
     zf-ZPR1  55 ritlkveseedlnrqvlkSetatveipeleleippgtlegrlttvEGlLeqikeeleke.egdqaer..ed.eekekieeflekleeliegeepftlil 149
                  +tl+ve+++dl r ++kS  a+v+ip+le+ei +  ++ r+ tv   +++++ +l+++ +g qae   e  +e+ +i + +ekle+l++ +epf +++
  KOO22489.1 150 LMTLRVEQSTDLWRVLFKSGAAAVRIPHLEFEIGA-DSKRRIDTVYNHINNAIWNLSSHmRGAQAEAgaEFtAEHIAILDTVEKLEALLDVNEPFIIVV 247
                 689******************************99.8888****************944478888886422567888999******************* PP

     zf-ZPR1 150 dDpagnSf 157
                 dDp+g S 
  KOO22489.1 248 DDPTGASR 255
                 *****996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (274 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       315  (0.0175693); expected 358.6 (0.02)
Passed bias filter:                      297  (0.0165653); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.25s 00:00:00.69 Elapsed: 00:00:00.41
# Mc/sec: 2010.46
//
Query:       KOO22490.1  [L=643]
Description: hypothetical protein Ctob_000299 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (643 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       569  (0.0317363); expected 358.6 (0.02)
Passed bias filter:                      388  (0.0216409); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.59u 0.26s 00:00:00.85 Elapsed: 00:00:00.44
# Mc/sec: 4436.56
//
Query:       KOO22491.1  [L=140]
Description: endoribonuclease l-psp [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.5e-26   91.8   0.0      5e-26   91.6   0.0    1.0  1  YjgF_endoribonc  YjgF/chorismate_mutase-like, putative endori
    3.1e-17   62.7   0.0    4.4e-17   62.2   0.0    1.2  1  Ribonuc_L-PSP    Endoribonuclease L-PSP


Domain annotation for each model (and alignments):
>> YjgF_endoribonc  YjgF/chorismate_mutase-like, putative endoribonuclease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   91.6   0.0   5.6e-30     5e-26      15     148 .]       2     138 ..       1     138 [. 0.95

  Alignments for each domain:
  == domain 1  score: 91.6 bits;  conditional E-value: 5.6e-30
                      ---SSSS-SEEEETTEEEE--B--EET...TEE--BS-BTTTB-HHHHHHHHHHHHHHHHHHHHHHHSSGGG-SEEEEEEEEE-B-TT---HHH CS
  YjgF_endoribonc  15 aaalGayepyaivasflttsfqlpylq...ekllyvGllGddvsvseGiaaarlaalnalaqlkeaaGelarvkrlirleGvlnvtqdyiempk 105
                      + alG y p  + ++++ t++ + + +    + l +G++G d+++ e    a+  al+ +a lk+ +G+l ++kr++++ G +n    ++e+p 
       KOO22491.1   2 PKALGVYVPAVRSGNYIFTAGHIYFTDptdATTLKKGKVGVDYTTAEAADIAKGIALELIATLKNEVGDLDKIKRIVKVVGFVNAPDTFEEQPE 95 
                      679*******************99975222567899********************************************************** PP

                      HHHHHHHHHHHHHGGGG--EEEEEE-SS-GGGBSEEEEEEEE- CS
  YjgF_endoribonc 106 vldaasdlllevlGeaGrhartiltnhvmplnalvllylfael 148
                      vl++ s+ll  v+Ge+G har +++ + +p n +v + l ae+
       KOO22491.1  96 VLNGCSKLLGAVFGERGVHARSAVGTNSLPRNVPVEIELIAEV 138
                      *****************************************96 PP

>> Ribonuc_L-PSP  Endoribonuclease L-PSP
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.2   0.0   4.9e-21   4.4e-17       5     121 .]       2     138 ..       1     138 [. 0.84

  Alignments for each domain:
  == domain 1  score: 62.2 bits;  conditional E-value: 4.9e-21
                    TTTSSS-BSEEEETTEEEEEEE-SB-T.......TTSCB.-SSHHHHHHHHHH.HHHHHHHHTT--GGG......EEEEEEEESSGGGHHHHHHHH CS
  Ribonuc_L-PSP   5 paaaapYsqavkagnlvyvsGqlpldp.......etgelvegdveeqtrqale.nlkavLaaagaslsd......vVkvtvFladiedfaevnevy 86 
                    p+a++ Y++av++gn ++++G++ +++       ++g+++ + ++++++++ +  + +++a+   +++d      +Vkv  F++  + f+e+ ev+
     KOO22491.1   2 PKALGVYVPAVRSGNYIFTAGHIYFTDptdattlKKGKVGVDYTTAEAADIAKgIALELIATLKNEVGDldkikrIVKVVGFVNAPDTFEEQPEVL 97 
                    8999*******************8877788899999999955555555554441445666666666666666999********************* PP

                    HHHSSSS.....T.S--EEEEEE-SBSGGG-SEEEEEEEE- CS
  Ribonuc_L-PSP  87 aeafdel.....k.eaParsaveVaaLpkgakvEIeaiavv 121
                    ++ ++ l     + + +arsav+ ++Lp+++ vEIe+ia+v
     KOO22491.1  98 NGCSKLLgavfgErGVHARSAVGTNSLPRNVPVEIELIAEV 138
                    ******9999995699***********************85 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (140 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       286  (0.0159518); expected 358.6 (0.02)
Passed bias filter:                      259  (0.0144459); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.35u 0.26s 00:00:00.61 Elapsed: 00:00:00.40
# Mc/sec: 1048.48
//
Query:       KOO22492.1  [L=541]
Description: 2og-fe oxygenase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    6.4e-25   87.6   0.2      1e-09   38.9   0.0    2.5  3  Ank_2         Ankyrin repeats (3 copies)
      1e-13   51.6   0.0    2.2e-13   50.6   0.0    1.6  1  2OG-FeII_Oxy  2OG-Fe(II) oxygenase superfamily
    1.3e-13   51.8   0.0    2.1e-13   51.1   0.0    1.3  1  DIOX_N        non-haem dioxygenase in morphine synthesis N-te
    6.6e-11   42.1   1.3    0.00031   21.1   0.1    3.7  3  Ank           Ankyrin repeat
    1.2e-10   41.7   0.0    2.7e-06   27.8   0.0    2.7  2  Ank_4         Ankyrin repeats (many copies)
    4.3e-09   36.5   0.2    1.2e-07   31.8   0.0    2.7  2  Ank_5         Ankyrin repeats (many copies)
    7.3e-06   26.0   0.1       0.05   14.2   0.0    3.2  2  Ank_3         Ankyrin repeat


Domain annotation for each model (and alignments):
>> Ank_2  Ankyrin repeats (3 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.6   0.0   4.1e-12     1e-08      22      82 ..      68     135 ..      47     136 .. 0.81
   2 !   38.9   0.0   3.9e-13     1e-09       1      73 [.      77     159 ..      77     169 .. 0.85
   3 !   25.7   0.0   5.2e-09   1.3e-05       1      49 [.     110     166 ..     110     200 .. 0.74

  Alignments for each domain:
  == domain 1  score: 35.6 bits;  conditional E-value: 4.1e-12
       Ank_2  22 pnk.ngktaLhyAakngnleivklLleh......adndgrtpLhyAarsghleivklLlekgadinlk 82 
                 +++  g++aLh+A+ + n+ +v+lLl++      +d +  tpLhyAa  g+  +v+lLl  g+d+ + 
  KOO22492.1  68 VDEeSGLSALHLAVDSENEGAVELLLAAralpdaVDPQRSTPLHYAALLGSVSLVNLLLGAGSDPAMV 135
                 232599***********999******9667877888999********99**********889998765 PP

  == domain 2  score: 38.9 bits;  conditional E-value: 3.9e-13
       Ank_2   1 LhlAakngnlelvklLl.egadpn..k.ngktaLhyAakngnleivklLleh......adndgrtpLhyAarsghleivklLl 73 
                 LhlA+ ++n  +v+lLl + a p+  + +  t+LhyAa  g++ +v lLl +      +d+dg+tp  +A r+gh e++k Ll
  KOO22492.1  77 LHLAVDSENEGAVELLLaARALPDavDpQRSTPLHYAALLGSVSLVNLLLGAgsdpamVDDDGKTPSTLAQREGHKEVAKKLL 159
                 89****76667******86666665536899*******************8566787888********************887 PP

  == domain 3  score: 25.7 bits;  conditional E-value: 5.2e-09
       Ank_2   1 LhlAakngnlelvklLl.egadpn..k.ngktaLhyAakngnleivklLleh....a 49 
                 Lh+Aa+ g+ +lv+lLl +g+dp   + +gkt+  +A ++g++e++k Ll +    a
  KOO22492.1 110 LHYAALLGSVSLVNLLLgAGSDPAmvDdDGKTPSTLAQREGHKEVAKKLLVAlaapA 166
                 8*******99*******99999877636****************9966664333441 PP

>> 2OG-FeII_Oxy  2OG-Fe(II) oxygenase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.6   0.0   8.6e-17   2.2e-13       5     100 ..     374     484 ..     370     485 .. 0.83

  Alignments for each domain:
  == domain 1  score: 50.6 bits;  conditional E-value: 8.6e-17
                   EEEEEE-S------.......---EEEEEESSSEEEEEEE-....TT---EE.EETEEEE----TTEEEEEE-HHHHHHTTS-S----EEE-.---G CS
  2OG-FeII_Oxy   5 lvlnyypphpdpev.......ilglgahtdaslltillqdd....vgglevf.kdgkwlrvppvdnslivniGdallflsngryksvlHrVl.pvne 88 
                   l+  yypp+p +          l+ g+htd+  +til  d      ggle++  dg+w  vp  ++ l++niGd +  ++n r + ++HrV+ p  +
    KOO22492.1 374 LRFAYYPPQPPNGGaasatapGLRYGEHTDYDGFTILQRDGddglSGGLEIElSDGTWAPVPSLPGHLTINIGDLFARWTNDRWRATRHRVTlPKGT 470
                   667789***66554444454556699***********999889********747788**********************************955555 PP

                   TGS..EEEEEEEE- CS
  2OG-FeII_Oxy  89 ger..Rvsiayfie 100
                        R+s+ yf  
    KOO22492.1 471 AAAagRLSVVYFTG 484
                   44499******986 PP

>> DIOX_N  non-haem dioxygenase in morphine synthesis N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.1   0.0   8.1e-17   2.1e-13       1      84 [.     176     263 ..     176     290 .. 0.91

  Alignments for each domain:
  == domain 1  score: 51.1 bits;  conditional E-value: 8.1e-17
      DIOX_N   1 iPvidlspl..sddedraavaeqlreAcrevGffyvvnhg..vpeelidelfeaareFFalPeeeKeklakspsfrGysrlgeektdg 84 
                 +P++dl+++  +d ++r+a+a + +eA+r++Gf+ v +    +pe++i e++++a eFF+lP +eK++la+ ++  Gy ++gee+++ 
  KOO22492.1 176 LPTVDLAAWlhGDTDTREALALAFDEAFRNWGFCSVRGYEelLPEAVITEARTQAVEFFKLPVDEKRRLARVDGVVGYLGPGEETVSD 263
                 79*****999777799*********************99666******************************************9986 PP

>> Ank  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.9   0.1   9.4e-05      0.24       2      31 ..      73     103 ..      72     104 .. 0.85
   2 !   21.1   0.1   1.2e-07   0.00031       4      32 .]     108     137 ..     107     137 .. 0.93
   3 !    5.9   0.0    0.0074        19       1      22 [.     138     159 ..     138     168 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 9.4e-05
                 SBBHHHHHH...HHTTHHHHHHHH.TTTSTTCBT CS
         Ank   2 GnTPLHlAa...tngkkriiklLL.hGAnlnald 31 
                 G ++LHlA+   ++g    ++lLL  +A ++a+d
  KOO22492.1  73 GLSALHLAVdseNEG---AVELLLaARALPDAVD 103
                 889******766666...******8799889998 PP

  == domain 2  score: 21.1 bits;  conditional E-value: 1.2e-07
                 BHHHHHHHHTTHHHHHHHH.TTTSTTCBTT CS
         Ank   4 TPLHlAatngkkriiklLL.hGAnlnaldn 32 
                 TPLH+Aa  g+++ + lLL  G++++++d+
  KOO22492.1 108 TPLHYAALLGSVSLVNLLLgAGSDPAMVDD 137
                 9******************7789**99985 PP

  == domain 3  score: 5.9 bits;  conditional E-value: 0.0074
                 TSBBHHHHHHHHTTHHHHHHHH CS
         Ank   1 dGnTPLHlAatngkkriiklLL 22 
                 dG TP  lA ++g+k+++k LL
  KOO22492.1 138 DGKTPSTLAQREGHKEVAKKLL 159
                 8*******99********9655 PP

>> Ank_4  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.9   0.0   0.00021      0.54      28      55 .]      66      93 ..      63     104 .. 0.60
   2 !   27.8   0.0     1e-09   2.7e-06       2      55 .]     107     159 ..     106     159 .. 0.95

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00021
       Ank_4 28 naqdnrsGetalhiAakrgnveilklLl 55
                na+d +sG++alh A+  +n  +++lLl
  KOO22492.1 66 NAVDEESGLSALHLAVDSENEGAVELLL 93
                5555566666666666666666666654 PP

  == domain 2  score: 27.8 bits;  conditional E-value: 1e-09
       Ank_4   2 ltaLhyaaisgrlelvrlLlekgadinaqdnrsGetalhiAakrgnveilklLl 55 
                 +t+Lhyaa  g + lv lLl  g d+ ++ +++G t+   A + g++e++k Ll
  KOO22492.1 107 STPLHYAALLGSVSLVNLLLGAGSDPAMV-DDDGKTPSTLAQREGHKEVAKKLL 159
                 79***************************.999********9999****99887 PP

>> Ank_5  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.7   0.0      0.14   3.5e+02      39      56 .]      62      80 ..      60      85 .. 0.72
   2 !   31.8   0.0   4.8e-11   1.2e-07       1      52 [.      92     142 ..      92     146 .. 0.93

  Alignments for each domain:
  == domain 1  score: 1.7 bits;  conditional E-value: 0.14
       Ank_5 39 gadlnltdsrG.ltaldlA 56
                +a++n+ d++  l+al+lA
  KOO22492.1 62 PAHANAVDEESgLSALHLA 80
                6667777777667777776 PP

  == domain 2  score: 31.8 bits;  conditional E-value: 4.8e-11
       Ank_5   1 LlehgpadvnrldgggntpLhvAakygaadvvrlLlargadlnltdsrGlta 52 
                 Ll+++ a +++ d+ + tpLh+Aa  g+ ++v+lLl  g+d+ + d++G+t+
  KOO22492.1  92 LLAAR-ALPDAVDPQRSTPLHYAALLGSVSLVNLLLGAGSDPAMVDDDGKTP 142
                 78888.999999***************************************9 PP

>> Ank_3  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.4   0.0    0.0015       3.9       2      23 ..      73      94 ..      72     101 .. 0.88
   2 !   14.2   0.0     2e-05      0.05       4      29 ..     108     132 ..     106     134 .. 0.91

  Alignments for each domain:
  == domain 1  score: 8.4 bits;  conditional E-value: 0.0015
       Ank_3  2 GetpLhlAarsgnleivkfLle 23
                G ++LhlA+ s n   v++Ll 
  KOO22492.1 73 GLSALHLAVDSENEGAVELLLA 94
                89************99****98 PP

  == domain 2  score: 14.2 bits;  conditional E-value: 2e-05
       Ank_3   4 tpLhlAarsgnleivkfLlenkgadv 29 
                 tpLh+Aa+ g++++v +Ll   g d+
  KOO22492.1 108 TPLHYAALLGSVSLVNLLLG-AGSDP 132
                 9******************9.78887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (541 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       240  (0.0133861); expected 358.6 (0.02)
Passed bias filter:                      204  (0.0113782); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.52u 0.24s 00:00:00.76 Elapsed: 00:00:00.42
# Mc/sec: 3881.20
//
Query:       KOO22493.1  [L=301]
Description: histone deacetylase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.8e-48  165.6   1.3    4.9e-48  164.2   1.3    1.7  1  Hist_deacetyl    Histone deacetylase domain
  ------ inclusion threshold ------
        1.6    9.4   6.4       0.39   11.3   3.1    1.7  2  Optomotor-blind  Optomotor-blind protein N-terminal region


Domain annotation for each model (and alignments):
>> Hist_deacetyl  Histone deacetylase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  164.2   1.3   5.4e-52   4.9e-48       6     295 ..       2     266 ..       1     277 [. 0.87

  Alignments for each domain:
  == domain 1  score: 164.2 bits;  conditional E-value: 5.4e-52
                    HHHHHHHHHHHHT.THHHHCCE.EE-----HHHHTTTS-HHHHHHHHCHHHHCHHT.TTHCCHHHCCTSTSSSSSTHCTTTCCHHHHHHHHHHHHH CS
                    xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Hist_deacetyl   6 kRlsaileslaesvglldelelliqpseatkeellkvHskeYlelleslsnelkkkeeakekeleeiasklldddtpvspktlkaallavgavlea 101
                    ++++ + e+l++   l + l ++ +++ +++++l+ vH + Y+ +    +   ++         ++i         p sp+ ++ al ++g++++a
     KOO22493.1   2 QKYRYVREALQRE--LPSTLATFYESPLVSEKDLTLVHCEGYVSRFLGGQLTRDEL--------RRI-------GFPWSPQHVNRALSSTGGTVAA 80 
                    5677889999996..445566788999999**************997644443333........333.......3899****************** PP

                    HHHHHTTSSSEEEETT.SS--TT-BTTB-BTTBSS-HHHHHHHHHHH..CC-SS-EEEEE-SSS--HHHHHHCTT-TTEEEEEEEE-CCTSTTSS- CS
                    xxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Hist_deacetyl 102 vdavlsgsvkaafvlv.rPpgHHakaseasGFClvNnvaiaikylqa..khelkrvailDvDvHhGnGteeafysdpdvltlSiHryegifyPgtg 194
                    ++av++ +++a f+    ++ HHa a++ +G+C++N++a+a+ ++ +    +++rv+++D+DvH+GnGt ++f  d++v+t+S+H  e +++    
     KOO22493.1  81 AHAVCRADATAIFAGHiAGGTHHAFADRGEGYCVFNDIAVAAAVALRdhAARVQRVLVVDCDVHQGNGTASIFAGDERVFTASFHC-EANLFS--- 172
                    ********9*****999****************************662244588********************************.555553... PP

                    -TT---SGGGTTSEEEEEE-TT-BHHHHHHHHHHCHHHHHCCH--SEEEEEE-STTBTTSTT-S-BB-HHHHHHHHHHHCCCHGS-.G.EEEEE-S CS
                    xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxx RF
  Hist_deacetyl 195 aledlgegkgkgfnlnvpleegtgdeeylkvfeeilrpvleefkPdlilvsaGfDalkgdplgelnlsvegykeltkklaeladkv.kkvvllleG 289
                     + ++       + l v l++g+gde yl++++  l  ++e+ +P+l   +aG+D +++d++g+l+ls  g+k+    + + a ++  ++v++++G
     KOO22493.1 173 -AREV-------SDLDVDLPPGVGDEAYLEALQAHLPGLFERVRPQLCFFQAGVDVHESDRIGKLKLSSAGIKKRNALVYAAAARHgARLVVTMGG 260
                    .4444.......6899********************************************************************9956******** PP

                    ---HHH CS
                    xxxxxx RF
  Hist_deacetyl 290 GYnlea 295
                    GY ++ 
     KOO22493.1 261 GYPKDL 266
                    **8764 PP

>> Optomotor-blind  Optomotor-blind protein N-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   3.1   4.4e-05      0.39       6      71 ..      64     131 ..      60     138 .. 0.82
   2 ?   -3.6   0.1         2   1.8e+04      60      66 ..     244     250 ..     240     264 .. 0.56

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 4.4e-05
  Optomotor-blind   6 pyfPaaalaalaggnaGphpvglyPGallpklpPh.hPhphhal...GaayttaedvvlaaaaahqhhPa 71 
                      p     al++ +g+ a +h+v     + +  ++ h   ++hha+   G+ y   +d+ +aaa+a + h a
       KOO22493.1  64 PQHVNRALSSTGGTVAAAHAVCRADATAI--FAGHiAGGTHHAFadrGEGYCVFNDIAVAAAVALRDHAA 131
                      55556788888899999999877777888..999966789**99999*****************999977 PP

  == domain 2  score: -3.6 bits;  conditional E-value: 2
  Optomotor-blind  60 laaaaah 66 
                       aaaa h
       KOO22493.1 244 YAAAARH 250
                      4444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (301 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       416  (0.0232026); expected 358.6 (0.02)
Passed bias filter:                      338  (0.0188521); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.44u 0.25s 00:00:00.69 Elapsed: 00:00:00.40
# Mc/sec: 2273.88
//
Query:       KOO22494.1  [L=81]
Description: membrane protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (81 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       435  (0.0242624); expected 358.6 (0.02)
Passed bias filter:                      394  (0.0219756); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.27s 00:00:00.63 Elapsed: 00:00:00.42
# Mc/sec: 578.17
//
Query:       KOO22495.1  [L=158]
Description: mRNA capping [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.2e-13   49.6   0.0    4.9e-13   49.3   0.0    1.0  1  mRNA_cap_enzyme  mRNA capping enzyme, catalytic domain
  ------ inclusion threshold ------
      0.052   13.2   0.0      0.067   12.8   0.0    1.2  1  DNA_ligase_A_M   ATP dependent DNA ligase domain


Domain annotation for each model (and alignments):
>> mRNA_cap_enzyme  mRNA capping enzyme, catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.3   0.0   5.5e-17   4.9e-13      68     189 ..       9     125 ..       3     131 .. 0.89

  Alignments for each domain:
  == domain 1  score: 49.3 bits;  conditional E-value: 5.5e-17
                      SBGGSEEEEEEEEEEECTT.CEEEEEEEEEEEEEETTEEGTTSBHHHHHHHHHHHTHHHHHHHHHTTCCCCTTSSSEEEE--EEETTHHHHHHH CS
  mRNA_cap_enzyme  68 kvldetllDgElvidkvee.kkkelryliyDivaingvtvaeeplskRleilkkelikprneekktglletdkepfsvrlKefilleavaklle 160
                        + + +l gE+v dk  e   ++ r l yD++ai g +  ++pl+kRl++l++++  pr+++     +   +e ++vr K+ + l+ v   l 
       KOO22495.1   9 GTHAGLVLAGEVVGDKEGEgGSTTWRLLAYDVLAIHGNSTCNQPLKKRLALLNTDVLPPRKASP---AVA--TERLRVRAKDCFRLKYVPY-LL 96 
                      56788899********9998889*************************************9988...333..3689**********99999.89 PP

                      HCCCCCTTSTEEEEEEEESSSB--SEEEE CS
  mRNA_cap_enzyme 161 ekfikklshesDGLIfqpvkepyvagrds 189
                      +kf++k++h + GLIf   ++   +g+ +
       KOO22495.1  97 DKFLAKVTHPIRGLIFLRDDACHAPGTSE 125
                      9****************999999998765 PP

>> DNA_ligase_A_M  ATP dependent DNA ligase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0   7.5e-06     0.067     114     150 ..      32      68 ..      13      89 .. 0.82

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 7.5e-06
                     EEEEEEEEEEEETTEEHTTSCHHHHHHHHHHHB--BT CS
  DNA_ligase_A_M 114 elclfvFDiLyldgesltdeplkeRrklLeeilkese 150
                       +l+++D+L++ g+s  ++plk+R +lL++ + + +
      KOO22495.1  32 TWRLLAYDVLAIHGNSTCNQPLKKRLALLNTDVLPPR 68 
                     66899************************98774433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (158 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       217  (0.0121033); expected 358.6 (0.02)
Passed bias filter:                      207  (0.0115455); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.38u 0.23s 00:00:00.61 Elapsed: 00:00:00.40
# Mc/sec: 1194.60
//
Query:       KOO22496.1  [L=132]
Description: mitochondrial large subunit ribosomal protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.2e-19   69.5   0.0    2.8e-19   69.2   0.0    1.1  1  Img2      Mitochondrial large subunit ribosomal protein (Img2
     0.0076   16.7   0.0      0.011   16.3   0.0    1.2  1  SUI1      Translation initiation factor SUI1


Domain annotation for each model (and alignments):
>> Img2  Mitochondrial large subunit ribosomal protein (Img2)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.2   0.0   3.1e-23   2.8e-19       2      80 .]      56     132 .]      55     132 .] 0.98

  Alignments for each domain:
  == domain 1  score: 69.2 bits;  conditional E-value: 3.1e-23
        Img2   2 pYfvrRtrsgslPVYtdvkrggtkkltvirkieGDiaalredLrkaleelvkvnevtgkieikGdrveevkkfLeskgF 80 
                  ++v+R+r g+lPVYtd++ gg++k+t++rk  G++a l ++L++ ++  + v+   g++e+kG + + ++++L s+gF
  KOO22496.1  56 DFHVHRSRLGNLPVYTDFRTGGSRKVTIVRKFAGNAATLGKELERLCA--SPVTLFHGRVEVKGIHDKTIREWLLSLGF 132
                 79**********************************************..79999***********************9 PP

>> SUI1  Translation initiation factor SUI1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.0   1.2e-06     0.011      11      73 ..      74     130 ..      66     132 .] 0.87

  Alignments for each domain:
  == domain 1  score: 16.3 bits;  conditional E-value: 1.2e-06
        SUI1  11 qrggrKkvTtvsgleafgidlkklakelkkkfacsgsvvkdggeeiqvQGdqrkkvaelLtek 73 
                 ++gg +kvT+v+ +     +  +l kel + +a+ ++   +g   ++v G + k ++e+L + 
  KOO22496.1  74 RTGGSRKVTIVRKF---AGNAATLGKELERLCASPVTL-FHG--RVEVKGIHDKTIREWLLSL 130
                 4566999*****99...6689****************8.566..6***************875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (132 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       275  (0.0153383); expected 358.6 (0.02)
Passed bias filter:                      265  (0.0147805); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.37u 0.25s 00:00:00.62 Elapsed: 00:00:00.39
# Mc/sec: 1004.63
//
Query:       KOO22497.1  [L=1423]
Description: leucine rich repeat containing 45-like protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    4.8e-21   73.0   9.9      0.088   12.9   0.3    9.1  9  LRR_6         Leucine Rich repeat
     0.0011   19.4   2.9        1.6    9.2   0.1    3.8  4  LRR_4         Leucine Rich repeats (2 copies)
  ------ inclusion threshold ------
       0.13   12.5   0.1       0.39   11.0   0.1    1.9  1  Hairy_orange  Hairy Orange
       0.19   11.7   7.5       0.54   10.3   7.5    1.7  1  PRIMA1        Proline-rich membrane anchor 1
       0.28   11.9   1.5    4.5e+02    2.1   0.1    5.0  5  LRR_1         Leucine Rich Repeat
       0.45   10.3   9.4        3.8    7.3   1.6    3.6  4  LRR_8         Leucine rich repeat


Domain annotation for each model (and alignments):
>> LRR_6  Leucine Rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.3   0.0    0.0038        11       6      24 .]     710     728 ..     709     728 .. 0.93
   2 !   12.2   0.2   5.1e-05      0.15       2      23 ..     734     755 ..     734     756 .. 0.91
   3 !    8.4   0.1   0.00085       2.5       3      23 ..     771     791 ..     769     792 .. 0.84
   4 ?    2.4   0.1     0.067     2e+02       5      24 .]     801     820 ..     798     820 .. 0.89
   5 !    5.9   0.0    0.0053        16       3      22 ..     828     847 ..     826     849 .. 0.77
   6 !   12.9   0.3   2.9e-05     0.088       2      23 ..     855     876 ..     854     877 .. 0.95
   7 !    9.9   0.0   0.00027      0.82       2      24 .]     883     905 ..     882     905 .. 0.97
   8 !   11.4   0.0   9.2e-05      0.27       1      23 [.     911     933 ..     911     934 .. 0.90
   9 ?   -1.0   0.0      0.84   2.5e+03       2      13 ..     940     951 ..     939     952 .. 0.90

  Alignments for each domain:
  == domain 1  score: 6.3 bits;  conditional E-value: 0.0038
       LRR_6   6 teLdLsgNdIgDeGaeaLa 24 
                 + LdL +N +  eGaeaL+
  KOO22497.1 710 RVLDLCDNRLHAEGAEALS 728
                 579**************96 PP

  == domain 2  score: 12.2 bits;  conditional E-value: 5.1e-05
       LRR_6   2 nthLteLdLsgNdIgDeGaeaL 23 
                 n +L eLdLs+N Ig++ +++L
  KOO22497.1 734 NEKLSELDLSSNAIGGKAMSSL 755
                 67899***********999987 PP

  == domain 3  score: 8.4 bits;  conditional E-value: 0.00085
       LRR_6   3 thLteLdLsgNdIgDeGaeaL 23 
                 ++L+ L L +N++gD   eaL
  KOO22497.1 771 RTLRVLRLGDNGLGDGATEAL 791
                 89*************765555 PP

  == domain 4  score: 2.4 bits;  conditional E-value: 0.067
       LRR_6   5 LteLdLsgNdIgDeGaeaLa 24 
                 L++L+L +N+++   a+ L+
  KOO22497.1 801 LQHLSLESNKMTSISASLLC 820
                 99**********99998887 PP

  == domain 5  score: 5.9 bits;  conditional E-value: 0.0053
       LRR_6   3 thLteLdLsgNdIgDeGaea 22 
                 + L eLdLs+N +    +e 
  KOO22497.1 828 CPLVELDLSWNAMRATAIEE 847
                 6699*******987766655 PP

  == domain 6  score: 12.9 bits;  conditional E-value: 2.9e-05
       LRR_6   2 nthLteLdLsgNdIgDeGaeaL 23 
                 n+hL  L L +N +g+ G+ aL
  KOO22497.1 855 NHHLLRLGLGWNVMGNRGGVAL 876
                 9*******************99 PP

  == domain 7  score: 9.9 bits;  conditional E-value: 0.00027
       LRR_6   2 nthLteLdLsgNdIgDeGaeaLa 24 
                 nt+L++L + +  I  eGaeaLa
  KOO22497.1 883 NTTLRTLAVPHAAIEAEGAEALA 905
                 9*********************8 PP

  == domain 8  score: 11.4 bits;  conditional E-value: 9.2e-05
       LRR_6   1 snthLteLdLsgNdIgDeGaeaL 23 
                 +n++Lt+L+Ls+N +g + +++L
  KOO22497.1 911 TNRTLTALELSFNLVGEDAVSSL 933
                 59*************99888887 PP

  == domain 9  score: -1.0 bits;  conditional E-value: 0.84
       LRR_6   2 nthLteLdLsgN 13 
                 n++L++  L+g+
  KOO22497.1 940 NPTLKTIALQGC 951
                 9******99998 PP

>> LRR_4  Leucine Rich repeats (2 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.6   0.0    0.0036        11       4      33 ..     710     745 ..     710     755 .. 0.78
   2 ?    1.1   0.0       0.2     6e+02       3      15 ..     773     785 ..     771     798 .. 0.77
   3 !    9.2   0.1   0.00055       1.6       3      30 ..     801     835 ..     799     850 .. 0.71
   4 ?   -2.7   0.0       3.2   9.5e+03       3      14 ..     915     926 ..     914     949 .. 0.70

  Alignments for each domain:
  == domain 1  score: 6.6 bits;  conditional E-value: 0.0036
                 -EEE--SS---E-S-..HH...H.-TT--EEE-.-S CS
       LRR_4   4 evLdLsnNqltdipl..le...k.lpnLkeLdLsgN 33 
                 +vLdL +N+l   +   l+     + +L eLdLs+N
  KOO22497.1 710 RVLDLCDNRLHAEGAeaLSrglEiNEKLSELDLSSN 745
                 6899**99*997666663356644999******999 PP

  == domain 2  score: 1.1 bits;  conditional E-value: 0.2
                 --EEE--SS---E CS
       LRR_4   3 LevLdLsnNqltd 15 
                 L+vL L++N l d
  KOO22497.1 773 LRVLRLGDNGLGD 785
                 99******99987 PP

  == domain 3  score: 9.2 bits;  conditional E-value: 0.00055
                 --EEE--SS---E-S-...HHH-TT....--EEE- CS
       LRR_4   3 LevLdLsnNqltdipl...leklpn....LkeLdL 30 
                 L++L+L +N++t+i+    + +l +    L eLdL
  KOO22497.1 801 LQHLSLESNKMTSISAsllCTQLSSpkcpLVELDL 835
                 9***************8532234444477777887 PP

  == domain 4  score: -2.7 bits;  conditional E-value: 3.2
                 --EEE--SS--- CS
       LRR_4   3 LevLdLsnNqlt 14 
                 L+ L Ls N + 
  KOO22497.1 915 LTALELSFNLVG 926
                 778888888765 PP

>> Hairy_orange  Hairy Orange
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.1   0.00013      0.39       8      36 ..     652     680 ..     651     682 .. 0.94

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00013
  Hairy_orange   8 eCakEVsrfLaspegvdpdvkqrLlrHLq 36 
                    Ca++   ++ ++e++  +  +r+l+HL+
    KOO22497.1 652 ACARQLQAYMKACESLGTTPVSRVLNHLD 680
                   5*************9999**********8 PP

>> PRIMA1  Proline-rich membrane anchor 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   7.5   0.00018      0.54      25      59 ..    1339    1372 ..    1326    1375 .. 0.76

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.00018
      PRIMA1   25 rypplpppppppppprllsltaaestvsplepwws 59  
                  +  plpppppppppp   +++a+e   ++++ +w+
  KOO22497.1 1339 PLVPLPPPPPPPPPPGA-ATAAPEEEQVTAQGYWR 1372
                  56799999999999986.55667777777776665 PP

>> LRR_1  Leucine Rich Repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.5   0.0      0.51   1.5e+03       3      12 ..     710     719 ..     708     735 .. 0.76
   2 ?    1.2   0.0      0.29   8.8e+02       1      13 [.     736     748 ..     736     757 .. 0.81
   3 ?   -0.2   0.0      0.89   2.6e+03       2      13 ..     773     784 ..     772     792 .. 0.86
   4 ?    2.1   0.1      0.15   4.5e+02       2      18 ..     801     817 ..     800     825 .. 0.80
   5 ?   -0.2   0.0       0.9   2.7e+03       2      10 ..     830     838 ..     830     848 .. 0.91

  Alignments for each domain:
  == domain 1  score: 0.5 bits;  conditional E-value: 0.51
       LRR_1   3 rhLdLsnnpl 12 
                 r+LdL++n+l
  KOO22497.1 710 RVLDLCDNRL 719
                 89******98 PP

  == domain 2  score: 1.2 bits;  conditional E-value: 0.29
       LRR_1   1 nLrhLdLsnnpll 13 
                 +L +LdLs+n ++
  KOO22497.1 736 KLSELDLSSNAIG 748
                 799*******775 PP

  == domain 3  score: -0.2 bits;  conditional E-value: 0.89
       LRR_1   2 LrhLdLsnnpll 13 
                 Lr+L L++n l+
  KOO22497.1 773 LRVLRLGDNGLG 784
                 9********984 PP

  == domain 4  score: 2.1 bits;  conditional E-value: 0.15
       LRR_1   2 LrhLdLsnnpllglppn 18 
                 L+hL L++n  ++++++
  KOO22497.1 801 LQHLSLESNKMTSISAS 817
                 9********98665554 PP

  == domain 5  score: -0.2 bits;  conditional E-value: 0.9
       LRR_1   2 LrhLdLsnn 10 
                 L +LdLs+n
  KOO22497.1 830 LVELDLSWN 838
                 679*****9 PP

>> LRR_8  Leucine rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.1   0.0    0.0031       9.2       4      37 ..     710     747 ..     708     755 .. 0.77
   2 ?    7.3   1.6    0.0013       3.8       2      43 ..     772     817 ..     771     840 .. 0.78
   3 ?   -2.2   0.0       1.2   3.6e+03      37      54 ..     845     861 ..     829     867 .. 0.46
   4 ?   -2.6   0.0       1.6   4.9e+03       2      11 ..     914     923 ..     910     927 .. 0.58

  Alignments for each domain:
  == domain 1  score: 6.1 bits;  conditional E-value: 0.0031
                 SEEE-TTS--SEE-TTSSTT.-...TT--EEE--SS-- CS
       LRR_8   4 tsLdLsnNrltslddeaFkg.l...snLkvLdLsnNll 37 
                 ++LdL++Nrl++ + ea ++ l   ++L +LdLs+N +
  KOO22497.1 710 RVLDLCDNRLHAEGAEALSRgLeinEKLSELDLSSNAI 747
                 57899999999888888877543336899999999988 PP

  == domain 2  score: 7.3 bits;  conditional E-value: 0.0013
                 T-SEEE-TTS--SEE-TTSSTT-....TT--EEE--SS---GGGGG CS
       LRR_8   2 nLtsLdLsnNrltslddeaFkgl....snLkvLdLsnNllttlspg 43 
                 +L++L L +N l +   ea  +l    + L++L+L +N++t++s+ 
  KOO22497.1 772 TLRVLRLGDNGLGDGATEALMSLltfsKVLQHLSLESNKMTSISAS 817
                 68888888888888888887776444468**************954 PP

  == domain 3  score: -2.2 bits;  conditional E-value: 1.2
                 --GGGGGGGTT--S-.EE CS
       LRR_8  37 lttlspgafsgLpsLrsL 54 
                 ++ ls ga+++ ++L  L
  KOO22497.1 845 IEELS-GALRDNHHLLRL 861
                 33443.555555555555 PP

  == domain 4  score: -2.6 bits;  conditional E-value: 1.6
                 T-SEEE-TTS CS
       LRR_8   2 nLtsLdLsnN 11 
                 +Lt L Ls+N
  KOO22497.1 914 TLTALELSFN 923
                 4455555554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1423 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       460  (0.0256568); expected 358.6 (0.02)
Passed bias filter:                      296  (0.0165096); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.79u 0.24s 00:00:01.03 Elapsed: 00:00:00.41
# Mc/sec: 10467.88
//
Query:       KOO22498.1  [L=331]
Description: angio-associated migratory cell [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    2.9e-33  113.3  12.4    4.7e-08   33.6   0.1    7.5  8  WD40         WD domain, G-beta repeat
      2e-12   47.2   0.0      0.018   15.3   0.0    4.3  4  ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain
    7.8e-09   34.9   0.2    0.00066   18.7   0.0    3.3  3  Ge1_WD40     WD40 region of Ge1, enhancer of mRNA-decapping p
     0.0004   19.8   0.0        1.1    8.5   0.0    2.9  3  WD40_like    WD40-like domain
     0.0098   14.6   0.0          8    5.0   0.0    3.1  3  Nup160       Nucleoporin Nup120/160
  ------ inclusion threshold ------
       0.27   11.1   3.4         10    6.1   0.2    3.3  3  PKD          PKD domain


Domain annotation for each model (and alignments):
>> WD40  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.9   0.0     0.017        52       5      33 ..      20      50 ..      17      55 .. 0.72
   2 !   33.6   0.1   1.6e-11   4.7e-08       4      37 ..      62      96 ..      58      97 .. 0.89
   3 ?   -3.0   0.1       5.5   1.7e+04      27      38 .]     100     111 ..     100     111 .. 0.86
   4 !   22.8   0.2     4e-08   0.00012       2      38 .]     116     153 ..     115     153 .. 0.87
   5 ?    4.7   0.0     0.021        63      12      36 ..     175     199 ..     167     199 .. 0.81
   6 !   12.3   0.1   8.5e-05      0.25       2      38 .]     206     243 ..     205     243 .. 0.69
   7 !    6.6   0.0    0.0053        16      10      38 .]     255     284 ..     247     284 .. 0.81
   8 !   30.2   0.1   1.8e-10   5.3e-07       1      37 [.     288     327 ..     288     328 .. 0.95

  Alignments for each domain:
  == domain 1  score: 4.9 bits;  conditional E-value: 0.017
                EEEESS.SSEEEEEEETTSSE.EEEEETTSE CS
        WD40  5 rtltGH.ssvtslafspdgaw.lasGsdDgt 33
                + l +H  +v ++a++p ++  la+G+ D  
  KOO22498.1 20 QRLIAHtEPVFAVAVNPAHPEiLATGGGDDV 50
                55789*888*****88888883578865765 PP

  == domain 2  score: 33.6 bits;  conditional E-value: 1.6e-11
                EEEEESSSS.EEEEEEETTSSEEEEEETTSEEEEE CS
        WD40  4 lrtltGHss.vtslafspdgawlasGsdDgtvriW 37
                  +l+GHs+ v+ +afs dg++lasGs Dg+vr+W
  KOO22498.1 62 AFKLEGHSDtVSTIAFSADGSMLASGSLDGSVRVW 96
                56789**556************************* PP

  == domain 3  score: -3.0 bits;  conditional E-value: 5.5
                 EEETTSEEEEEE CS
        WD40  27 sGsdDgtvriWd 38 
                 +Gs+D t  +W+
  KOO22498.1 100 TGSEDATAWMWK 111
                 6999*9999995 PP

  == domain 4  score: 22.8 bits;  conditional E-value: 4e-08
                 EEEEEEESS.SSE.EEEEEETTSSEEEEEETTSEEEEEE CS
        WD40   2 qclrtltGH.ssv.tslafspdgawlasGsdDgtvriWd 38 
                 + ++++++H  sv +++ f  +g+ +++Gs+Dg+vr+W+
  KOO22498.1 116 SVMQIFSAHsASVsYGC-FVNNGRSVLTGSEDGSVRVWN 153
                 56789****77797677.899999999***********8 PP

  == domain 5  score: 4.7 bits;  conditional E-value: 0.021
                 SEEEEEEETTSSEEEEEETTSEEEE CS
        WD40  12 svtslafspdgawlasGsdDgtvri 36 
                 ++t+la +p ++ ++ Gs Dg +++
  KOO22498.1 175 PITCLAAHPAQPVFMFGSADGGLKL 199
                 5********9999887999998875 PP

  == domain 6  score: 12.3 bits;  conditional E-value: 8.5e-05
                 EEEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40   2 qclrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 
                 ++l ++  H  sv  + f++  a+ as+++Dg+  iWd
  KOO22498.1 206 KTLAVFPSHdASVEFCGFCDVMALAASCGMDGKMCIWD 243
                 677888888666543333444444899999*******9 PP

  == domain 7  score: 6.6 bits;  conditional E-value: 0.0053
                 S.SSEEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40  10 H.ssvtslafspdgawlasGsdDgtvriWd 38 
                 H  +v  l++ + +++++++   + +r+Wd
  KOO22498.1 255 HtAGVIELRWLKGSPMILTCALSREIRLWD 284
                 6455668989999999****99*******9 PP

  == domain 8  score: 30.2 bits;  conditional E-value: 1.8e-10
                 TEEEEEEESS.SSEEEEE..EETTSSEEEEEETTSEEEEE CS
        WD40   1 gqclrtltGH.ssvtsla..fspdgawlasGsdDgtvriW 37 
                 g+cl+tltGH  +v +++  +   g +++sGsdD+t r+W
  KOO22498.1 288 GECLQTLTGHhEPVLCFDvgYTTQGIYVVSGSDDKTARLW 327
                 69********888*999999******************** PP

>> ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.0   6.1e-06     0.018      30      70 ..      63     101 ..      40     106 .. 0.85
   2 !    5.8   0.0    0.0058        17      35      76 ..     122     163 ..     101     170 .. 0.81
   3 !   14.7   0.0   9.3e-06     0.028      39      85 ..     174     219 ..     168     233 .. 0.88
   4 !    6.5   0.0    0.0035        11      30      87 ..     242     304 ..     218     309 .. 0.79

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 6.1e-06
  ANAPC4_WD40  30 wtleedkedsevrsLaWkpdgklLavaysdgevrlldaesg 70 
                  ++l  ++++ +v+ +a++ dg++La +  dg+vr+ ++ +g
   KOO22498.1  63 FKL--EGHSDTVSTIAFSADGSMLASGSLDGSVRVWHVPTG 101
                  555..788899**************************9887 PP

  == domain 2  score: 5.8 bits;  conditional E-value: 0.0058
  ANAPC4_WD40  35 dkedsevrsLaWkpdgklLavaysdgevrlldaesgkvvhsl 76 
                  ++++ +v+  ++ ++g+    + +dg+vr+ +  +g+v h l
   KOO22498.1 122 SAHSASVSYGCFVNNGRSVLTGSEDGSVRVWNPRTGTVEHCL 163
                  4567788888999********************999987765 PP

  == domain 3  score: 14.7 bits;  conditional E-value: 9.3e-06
  ANAPC4_WD40  39 sevrsLaWkpdgklLavaysdgevrlldaesgkvvhslsvksekavt 85 
                  + +++La +p   +++++ +dg ++l +aesgk++  ++ ++ + v 
   KOO22498.1 174 RPITCLAAHPAQPVFMFGSADGGLKLAHAESGKTLAVFPSHDAS-VE 219
                  6799**********************************999885.55 PP

  == domain 4  score: 6.5 bits;  conditional E-value: 0.0035
  ANAPC4_WD40  30 wtl......eedkedsevrsLaWkpdgklLavaysdgevrlldaesgkvvhslsvksekavtcl 87 
                  w+l      +++ +   v +L+W +   ++       e+rl d  sg+++++l+ ++e  v c 
   KOO22498.1 242 WDLgtfsprHTCMHTAGVIELRWLKGSPMILTCALSREIRLWDGRSGECLQTLTGHHEP-VLCF 304
                  55555555566778889999***88777777777788****************988884.7775 PP

>> Ge1_WD40  WD40 region of Ge1, enhancer of mRNA-decapping protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.7   0.0   2.2e-07   0.00066     181     218 ..      62     100 ..      56     118 .. 0.87
   2 !    5.6   0.0    0.0022       6.5     184     228 ..     121     164 ..     110     181 .. 0.68
   3 !    6.8   0.0   0.00094       2.8     260     284 ..     271     295 ..     268     312 .. 0.87

  Alignments for each domain:
  == domain 1  score: 18.7 bits;  conditional E-value: 2.2e-07
    Ge1_WD40 181 llkieehs.liveaafspdGtalatasedGevkffqvyl 218
                  +k+e hs ++++ afs+dG  la  s dG v+ + v  
  KOO22498.1  62 AFKLEGHSdTVSTIAFSADGSMLASGSLDGSVRVWHVPT 100
                 679999998999***********************9865 PP

  == domain 2  score: 5.6 bits;  conditional E-value: 0.0022
    Ge1_WD40 184 ieehs.liveaafspdGtalatasedGevkffqvyledeeeprCLh 228
                 ++ hs  ++ + f  +G ++ t sedG v+ +       + ++CL+
  KOO22498.1 121 FSAHSaSVSYGCFVNNGRSVLTGSEDGSVRVWNPRTG--TVEHCLY 164
                 4556558999********************9974333..3334443 PP

  == domain 3  score: 6.8 bits;  conditional E-value: 0.00094
    Ge1_WD40 260 itgadnnselklWscelWtClqtik 284
                 i ++   +e++lW   + +Clqt+ 
  KOO22498.1 271 ILTCALSREIRLWDGRSGECLQTLT 295
                 56778899***************96 PP

>> WD40_like  WD40-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.0   0.0      0.15   4.4e+02       2      65 ..      28      93 ..      27      98 .. 0.75
   2 !    8.5   0.0   0.00036       1.1       7      65 ..      90     149 ..      87     157 .. 0.88
   3 !    7.6   0.0   0.00069       2.1      14      66 ..     187     240 ..     176     247 .. 0.87

  Alignments for each domain:
  == domain 1  score: -0.0 bits;  conditional E-value: 0.15
   WD40_like  2 eiYsidiskkg.slilyGgkddkctvlkleslesvsivesfedSvifvklldddlil.vvtlDGti 65
                +++++ +++   ++++ Gg dd   +  + + +    +e+ +d v  + +  d  +l  ++lDG +
  KOO22498.1 28 PVFAVAVNPAHpEILATGGGDDVGYLWRVGQPQPAFKLEGHSDTVSTIAFSADGSMLaSGSLDGSV 93
                677777776542677889999999999999999999999999999888888777555146888876 PP

  == domain 2  score: 8.5 bits;  conditional E-value: 0.00036
   WD40_like   7 diskkgslilyGgkddkctvlkleslesvsivesfedSvifvkllddd.lilvvtlDGti 65 
                 d s +   +  G++d ++ + kl+ + +++i+   + Sv +  ++++   +l ++ DG +
  KOO22498.1  90 DGSVRVWHVPTGSEDATAWMWKLPEGSVMQIFSAHSASVSYGCFVNNGrSVLTGSEDGSV 149
                 55555666778**********************************9987899******87 PP

  == domain 3  score: 7.6 bits;  conditional E-value: 0.00069
   WD40_like  14 lilyGgkddkctvlkleslesvsivesfedSvifvkllddd.lilvvtlDGtil 66 
                 ++++G+ d  +++++ es+++  ++ s + Sv f+ + d   l   + +DG++ 
  KOO22498.1 187 VFMFGSADGGLKLAHAESGKTLAVFPSHDASVEFCGFCDVMaLAASCGMDGKMC 240
                 689**********************************99874667789999985 PP

>> Nup160  Nucleoporin Nup120/160
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.0   0.0    0.0027         8     223     251 ..      75     102 ..      55     111 .. 0.73
   2 ?    2.1   0.0      0.02        58     220     251 ..     127     158 ..     114     167 .. 0.77
   3 !    3.4   0.0    0.0081        24     225     255 ..     259     293 ..     247     299 .. 0.84

  Alignments for each domain:
  == domain 1  score: 5.0 bits;  conditional E-value: 0.0027
                 T.....TTTEEEEEETT-EEEEEETTTTE CS
      Nup160 223 vavveigqtylfalsrdgkLrvWnlltgk 251
                 +a++  + ++l++ s+dg +rvW + tg+
  KOO22498.1  75 IAFSA-DGSMLASGSLDGSVRVWHVPTGS 102
                 23334.999****************9987 PP

  == domain 2  score: 2.1 bits;  conditional E-value: 0.02
                 EEET.....TTTEEEEEETT-EEEEEETTTTE CS
      Nup160 220 dvavavveigqtylfalsrdgkLrvWnlltgk 251
                 +v+ ++   +   +++ s dg +rvWn +tg+
  KOO22498.1 127 SVSYGCFVNNGRSVLTGSEDGSVRVWNPRTGT 158
                 455555433666788999*********99986 PP

  == domain 3  score: 3.4 bits;  conditional E-value: 0.0081
                 ........TTTEEEEEETT-EEEEEETTTTEEEEE CS
      Nup160 225 vvei....gqtylfalsrdgkLrvWnlltgkclat 255
                 v+e     g+ ++++  + +++r+W+ ++g cl t
  KOO22498.1 259 VIELrwlkGSPMILTCALSREIRLWDGRSGECLQT 293
                 55555566899*********************998 PP

>> PKD  PKD domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.7   0.1     0.019        56      22      44 ..      46      68 ..      26      82 .. 0.80
   2 ?    6.1   0.2    0.0033        10      20      50 ..      99     130 ..      77     131 .. 0.82
   3 ?   -0.3   0.0      0.33   9.9e+02      46      59 ..     304     317 ..     282     317 .. 0.78

  Alignments for each domain:
  == domain 1  score: 3.7 bits;  conditional E-value: 0.019
                -SS-SEEEEE--SS--EEEEETT CS
         PKD 22 dganvtysWdfgdgsvvqvlsep 44
                 g++v y+W +g+  ++++l+++
  KOO22498.1 46 GGDDVGYLWRVGQPQPAFKLEGH 68
                499*********98777777776 PP

  == domain 2  score: 6.1 bits;  conditional E-value: 0.0033
                 S..-SS-SEEEEE--SS--EEEEETTEEEEEE CS
         PKD  20 v.pdganvtysWdfgdgsvvqvlseptvthtY 50 
                    + + +++ W +  gsv q+ s ++++ +Y
  KOO22498.1  99 PtGSEDATAWMWKLPEGSVMQIFSAHSASVSY 130
                 45577899********************9998 PP

  == domain 3  score: -0.3 bits;  conditional E-value: 0.33
                 EEEEE-SSEEEEEE CS
         PKD  46 vthtYlspGeYeVt 59 
                 +   Y+++G Y+V+
  KOO22498.1 304 FDVGYTTQGIYVVS 317
                 55669999*99995 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (331 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       353  (0.0196888); expected 358.6 (0.02)
Passed bias filter:                      328  (0.0182944); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.49u 0.27s 00:00:00.76 Elapsed: 00:00:00.43
# Mc/sec: 2338.21
//
Query:       KOO22499.1  [L=349]
Description: hypothetical protein Ctob_000303 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.095   12.6  15.3        2.9    7.8   1.5    4.2  3  PKcGMP_CC  Coiled-coil N-terminus of cGMP-dependent protein k
       0.45   10.5   1.6         37    4.3   0.1    2.7  2  Nup54_C    Nup54 C-terminal interacting domain
        0.5    9.4   6.0       0.67    9.0   6.0    1.2  1  Atg14      Vacuolar sorting 38 and autophagy-related subunit 
        6.9    5.2  20.6         15    4.1  20.6    1.4  1  Hamartin   Hamartin protein


Domain annotation for each model (and alignments):
>> PKcGMP_CC  Coiled-coil N-terminus of cGMP-dependent protein kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.6   0.7    0.0031        14      12      28 ..      93     110 ..      92     112 .. 0.82
   2 ?    5.6   0.7    0.0031        14      12      28 ..     126     143 ..     125     146 .. 0.82
   3 ?    7.8   1.5   0.00064       2.9      10      29 ..     153     172 ..     145     175 .. 0.87

  Alignments for each domain:
  == domain 1  score: 5.6 bits;  conditional E-value: 0.0031
   PKcGMP_CC  12 ELEkrl.aekdeEIqELr 28 
                 EL ++l ae+ +EI+EL+
  KOO22499.1  93 ELKAKLkAEQNAEITELK 110
                 7777774599*******9 PP

  == domain 2  score: 5.6 bits;  conditional E-value: 0.0031
   PKcGMP_CC  12 ELEkrl.aekdeEIqELr 28 
                 EL ++l ae+ +EI+EL+
  KOO22499.1 126 ELKAKLkAEQNAEITELK 143
                 7777774599*******9 PP

  == domain 3  score: 7.8 bits;  conditional E-value: 0.00064
   PKcGMP_CC  10 IRELEkrlaekdeEIqELrs 29 
                 I+EL k  ae+ +EI+EL+ 
  KOO22499.1 153 IAELKKLKAEQNAEIAELKM 172
                 899999999*********96 PP

>> Nup54_C  Nup54 C-terminal interacting domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.3   0.1    0.0082        37       6      21 ..      89     104 ..      87     109 .. 0.89
   2 ?    4.3   0.1    0.0083        37       6      21 ..     122     137 ..     120     142 .. 0.89

  Alignments for each domain:
  == domain 1  score: 4.3 bits;  conditional E-value: 0.0082
     Nup54_C   6 dlqeeIKQfLkqqQeG 21 
                  +q e+K  Lk +Q++
  KOO22499.1  89 MAQSELKAKLKAEQNA 104
                 58************96 PP

  == domain 2  score: 4.3 bits;  conditional E-value: 0.0083
     Nup54_C   6 dlqeeIKQfLkqqQeG 21 
                  +q e+K  Lk +Q++
  KOO22499.1 122 MAQSELKAKLKAEQNA 137
                 58************96 PP

>> Atg14  Vacuolar sorting 38 and autophagy-related subunit 14
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.0   6.0   0.00015      0.67      53     107 ..     108     177 ..      82     232 .. 0.64

  Alignments for each domain:
  == domain 1  score: 9.0 bits;  conditional E-value: 0.00015
       Atg14  53 e..............eaeqledkik.nkkakleelksliadlrerlqelkdklsqlkkeieekkkklakl 107
                 e              ++++l++k+k  ++a + elk+l+a+++++++elk+   ++++ei+e k+ l++ 
  KOO22499.1 108 ElkklkapdeedkamAQSELKAKLKaEQNAEITELKKLKAEQNAEIAELKKLKAEQNAEIAELKMPLETA 177
                 0222333334555553333333333145667888888888888888888888888888888888877765 PP

>> Hamartin  Hamartin protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.1  20.6    0.0032        15     333     524 ..       5     195 ..       3     246 .. 0.65

  Alignments for each domain:
  == domain 1  score: 4.1 bits;  conditional E-value: 0.0032
    Hamartin 333 svcgmttppsspgivpttelelsssasllsskvsstpeaagkatpetTPakssrklppslsesavvvalpassrksspprkdeks.ess.kpdlskqee 429
                 +++g+++ ps + ++ +++++ + +   ++ +   t+e+  ++ p++  a++ + +++++ + a++++ +a+  + +p ++d+ + +s+ k +l+ +++
  KOO22499.1   5 LLSGVAVVPSARYNALHKPAREAAAERAEAGDDAPTAEGETQKEPTAEGAAQKEPTKEPTAKAAMEANATAEKGEGTPDEEDKAMaQSElKAKLKAEQN 103
                 689*********999988887777777777788888888788888877777777677888888888777777778888888887753331444444444 PP

    Hamartin 430 v..enekeleeslkskssvtlseLsdvikelleaesedsvekeeeeaaisqelseiteekketlvsrggldspfsrtleslaksqrrkrlasalsse 524
                 +  ++ k+l+ + ++ +++ +seL+  +k +   +++++ e ++ +a+ + e++e+++ k+e+     +l++p  +   +   s +    a  +s+ 
  KOO22499.1 104 AeiTELKKLKAPDEEDKAMAQSELKAKLKAE---QNAEITELKKLKAEQNAEIAELKKLKAEQNAEIAELKMPLETAPVTTPPSSK--AAAAETSMG 195
                 3336667777777799999999*99999988...5555666666677778888888888888888999999998887666666653..333333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (349 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1852  (0.103296); expected 358.6 (0.02)
Passed bias filter:                      454  (0.0253221); expected 358.6 (0.02)
Passed Vit filter:                        78  (0.00435049); expected 17.9 (0.001)
Passed Fwd filter:                        13  (0.000725082); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.65u 0.26s 00:00:00.91 Elapsed: 00:00:00.41
# Mc/sec: 2544.07
//
Query:       KOO22500.1  [L=299]
Description: hypothetical protein Ctob_000302 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
     0.0023   16.2   0.0      0.003   15.8   0.0    1.0  1  RHD3      Root hair defective 3 GTP-binding protein (RHD3)


Domain annotation for each model (and alignments):
>> RHD3  Root hair defective 3 GTP-binding protein (RHD3)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.0   1.7e-07     0.003     256     389 ..      73     203 ..      63     219 .. 0.82

  Alignments for each domain:
  == domain 1  score: 15.8 bits;  conditional E-value: 1.7e-07
                 HHHHHHHHHHHHHTTTTTTS......SS--SS--HHHHHHHHHHHHHHHHHHHHHHHTTS.-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
        RHD3 256 cdEianevleefiaaiaeleekqrelkeaaeaglleelgkklaslrekaleeydteAsry.ekgvyeeKrqeLeekvdsklkalfqavlealrkellek 353
                 c+   +++ e+ +a+     e ++ ++e a+ ++l++++ +   l +++l+ yd++ sr+  +  +  Kr++++     +   l  ++l  l +++l  
  KOO22500.1  73 CEGARQKACEAAAAE---ARELRTAIAE-AARNPLDDFAPRAERLIANTLRVYDASSSRFvSRRSHAAKREAVSRAATAEALRLTRQQLSVLFEDALAT 167
                 555444444444444...3333344444.56789**************************44678899************99***************** PP

                 HHHHHH.HCT.TTTHHHHHHHHHHHHHHHHHHHH.H CS
        RHD3 354 fkeavekalkagedFaesvkekkkklvekfdeeaes 389
                 f++++   + a   + +++++ ++k+ ++f++ ++ 
  KOO22500.1 168 FRADLVLLMAAAARYDRASTRLSRKTTRRFERAVRA 203
                 ******9999********************998864 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (299 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       703  (0.0392102); expected 358.6 (0.02)
Passed bias filter:                      338  (0.0188521); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.24s 00:00:00.69 Elapsed: 00:00:00.41
# Mc/sec: 2209.77
//
Query:       KOO22501.1  [L=259]
Description: hypothetical protein Ctob_000305 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (259 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       343  (0.019131); expected 358.6 (0.02)
Passed bias filter:                      281  (0.0156729); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.40u 0.22s 00:00:00.62 Elapsed: 00:00:00.38
# Mc/sec: 2059.84
//
Query:       KOO22502.1  [L=770]
Description: hypothetical protein Ctob_000304 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.16   11.9   0.5        8.8    6.3   0.2    2.6  2  RMMBL     Zn-dependent metallo-hydrolase RNA specificity doma
       0.89   10.1   8.1       0.38   11.3   1.0    2.8  2  PNPase    Polyribonucleotide nucleotidyltransferase, RNA bind


Domain annotation for each model (and alignments):
>> RMMBL  Zn-dependent metallo-hydrolase RNA specificity domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.3   0.2   0.00098       8.8      33      50 ..     137     154 ..     132     167 .. 0.84
   2 ?    2.6   0.0     0.014   1.3e+02      30      51 ..     236     257 ..     235     278 .. 0.86

  Alignments for each domain:
  == domain 1  score: 6.3 bits;  conditional E-value: 0.00098
       RMMBL  33 nvilvHGeeeatsalarl 50 
                 ++i vHGee + +++arl
  KOO22502.1 137 RLITVHGEETMRQEHARL 154
                 589************997 PP

  == domain 2  score: 2.6 bits;  conditional E-value: 0.014
       RMMBL  30 kprnvilvHGeeeatsalarll 51 
                 +p+++ + HG+e   +al +++
  KOO22502.1 236 RPPKLRPMHGDESVGEALGATA 257
                 7999********9999888776 PP

>> PNPase  Polyribonucleotide nucleotidyltransferase, RNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   1.0   4.2e-05      0.38      19      53 ..      83     117 ..      79     124 .. 0.86
   2 ?    1.4   1.0      0.05   4.4e+02      26      65 ..     653     689 ..     627     691 .. 0.63

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 4.2e-05
                 TSSSHHHHHHHHHHHHHHHHHHHH...HHSTTS-H CS
      PNPase  19 titeKqeRyaaldeikekvveafaaeleeedeede 53 
                 + ++KqeR +++++i ++v++++ ae+ e +++d+
  KOO22502.1  83 RERQKQERMSTIQQIVADVKARHHAEQRERNQLDT 117
                 5589********************88888877664 PP

  == domain 2  score: 1.4 bits;  conditional E-value: 0.05
                 HHHHHHHHHHHHHHHHH...HHSTTS-HHHHHHHHHHHHH CS
      PNPase  26 Ryaaldeikekvveafaaeleeedeedekeikeifkalek 65 
                 R+aa +e  e++++a+a   e  d+ ++k ++++f++le 
  KOO22502.1 653 RKAA-KEAAEAAAAALA--RERLDDASRKRMQAVFDTLEM 689
                 3333.333444444444..355689999999999999985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (770 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1436  (0.0800937); expected 358.6 (0.02)
Passed bias filter:                      536  (0.0298957); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.67u 0.25s 00:00:00.92 Elapsed: 00:00:00.42
# Mc/sec: 5531.94
//
Query:       KOO22503.1  [L=1323]
Description: transmembrane protein 16h [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
   9.7e-101  337.8   0.0   1.6e-100  337.1   0.0    1.3  1  Anoctamin    Calcium-activated chloride channel
      7e-07   29.2   0.0    4.9e-06   26.4   0.0    2.4  2  Anoct_dimer  Dimerisation domain of Ca+-activated chloride-ch
  ------ inclusion threshold ------
        4.5    7.7   5.8       0.57   10.7   0.6    2.3  2  MerC         MerC mercury resistance protein


Domain annotation for each model (and alignments):
>> Anoctamin  Calcium-activated chloride channel
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  337.1   0.0  2.7e-104  1.6e-100       1     448 [.     355    1255 ..     355    1256 .. 0.91

  Alignments for each domain:
  == domain 1  score: 337.1 bits;  conditional E-value: 2.7e-104
   Anoctamin    1 IrdyFGekiAlYFawlgfytsallppavlGlllflyglati.....................tlfdne.ltvvfalfmviWatlflelWkrreaela 75  
                  +rdyFGe++A+YFaw+++y + l+++a+l l+ + +g  ++                     +l+++  + +++ ++++ W+t+++e Wkrr+a la
  KOO22503.1  355 VRDYFGESMAFYFAWMEHYETYLIYLAILALVAIAAGASEVfpmregletaadgrlvpvddtRLVNSAwAKLIYCFIVAAWTTVYMESWKRRNAVLA 451 
                  79******************************999887777899*****************977777789*************************** PP

   Anoctamin   76 ykWgtsdfeeeeeprpefrgelkr.............................................espvtgeeefyyppwkrrlfrllvslpl 127 
                  y W+++dfeeee prpef +++ +                                               +v +e+++y+p+ +r  +++ + +p 
  KOO22503.1  452 YIWDVQDFEEEEAPRPEFLANFANgrwkavgreeetgclssitknikmeegygfftedgrfvaidqergA-QVCDEKKKYFPEEQRTKIKMYFAVPQ 547 
                  **********************99*****************************************97741.689999*******************9 PP

   Anoctamin  128 vllliclavvg...vlilrclalqelvssvke.....llsflptvlnlvlililnevykklaiwltdlEnhrtqseyekslilKvflfqfvnsylsl 216 
                  +ll++ l+++g   +l++++l+  +++  ++      + + +p +l ++ i+++n++y  la+ l+dlEn+rt++ey+++ ilKv++f+f+nsy+ l
  KOO22503.1  548 LLLMTGLMIIGqlaILVFKMLVQVNVYLRTHPfwgggFGQQIPNLLSVIWIQVMNNLYVTLATALNDLENYRTETEYQDQRILKVMVFTFINSYITL 644 
                  9999999888854344444333344444444477776666********************************************************* PP

   Anoctamin  217 fyiaFvkg.....kflkypgkylr......................................................................... 235 
                  fyiaF+k      +         +                                                                         
  KOO22503.1  645 FYIAFIKAngvavP-------FSEgisedgrpyrdlcgylpgesaeapwdgspdapgdvtcgvrqgcfrfantvpectatsavgaaccnfnattlae 734 
                  ******99444442.......33344666669999999999******************************************************88 PP

   Anoctamin  236 ..rseecdeegcleelkeqLaiilvtkqllnnilevllPyl.............keklkk..................................... 280 
                     +  + +++c  +l+++++ ++++k +++ il+v++P+              k    +                                     
  KOO22503.1  735 sgCNFVFVKRDCSFDLRQMMVNYTLLKTVYEGILQVAVPVAltmysqyklekqmK----Qhakkqtktvavdqpetspeanpfltginiqlplspvs 827 
                  7767777899*****************************7667766665554441....1566688899**************************** PP

   Anoctamin  281 ................................................................................................. 280 
                                                                                                                   
  KOO22503.1  828 prlgtsspaspddgrsppaldaaapssvklpspeaataessmpppapesprltprptspaapgmtpppsppegeaalkaaheetvakgeetegesea 924 
                  ************************************************************************************************* PP

   Anoctamin  281 .......................................kkkesekdekeeeeskkltqaekeyelkkyedlfddYlemviqfGyvtlFsaafPlap 338 
                                                         +++e +  ++ee++ ++ +++e e + + +  +f ++l  v+qfGyv++FsaafP+a+
  KOO22503.1  925 dealwkdevmamttpppsppsasvvpvavkndrrrakriAQRELAGMPPEEQRLAFHKSIELELTQEVFPGTFAEFLTKVVQFGYVSMFSAAFPIAA 1021
                  *****9999999999999999999999998887776665445899999999999**********999999999************************ PP

   Anoctamin  339 llallnniieirldafklvtelrRpvperaesiGiWqkilealgvlavitnallialtsdp.................................... 399 
                  +   + n+ieirlda+k+++  rR   e ae+iG Wq++l +++++a  +n+ l+ +ts +                                    
  KOO22503.1 1022 ISSAVGNFIEIRLDAIKVLQSRRRR-YEGAEDIGSWQDVLVLMSWIALPINVSLFVFTSWTfrkyvlvpsiatsdscspavpyetigdsagiwpnfi 1117
                  *****************99986665.9****************************88876346789999999999999******************* PP

   Anoctamin  400 .........................................................................................ek.dteqy 406 
                                                                                                           e+ + + +
  KOO22503.1 1118 lqangsingsmseakatlsprarfygtddsftikcaqnindcwaavggvewlpaqqylvteamprpygtdelkeavcnrgskmynqlhcEMcEGWSN 1214
                  ************************************************************************************9988744544533 PP

   Anoctamin  407 lsvlaarlafvvvlehvvlllkyliavlipdipkwvkeeikr 448 
                   +vl  ++++++++ehv+l+lk+++a++ipd p+wv++  +r
  KOO22503.1 1215 -EVLFWQMLVLFLVEHVLLVLKVFLAFIIPDSPQWVRDATAR 1255
                  .3444445555558***********************99876 PP

>> Anoct_dimer  Dimerisation domain of Ca+-activated chloride-channel, anoctamin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.4   0.0   8.2e-10   4.9e-06       9     166 ..      58     247 ..      46     273 .. 0.77
   2 ?   -1.6   0.0       0.3   1.8e+03      63      92 ..    1277    1307 ..    1275    1314 .. 0.77

  Alignments for each domain:
  == domain 1  score: 26.4 bits;  conditional E-value: 8.2e-10
  Anoct_dimer   9 iDfVLvyeeek.................................eeekekeeekkekReeFeknLeeeGLelekeeeeekkkklvFvkihaPwevlcr 73 
                   DfVL+y  e+                                 +++ ++ ++++e+R ++  + +++GL  + ++++  + +++++k+ a+ + l  
   KOO22503.1  58 ADFVLIYPVESeellrekakealkrgglsavagatglggiehhlKKQLTELDKRQERRANMILKFRQAGLMTQLSRSR--DGECMYLKVWATLDRLIV 153
                  4*******99999****************************998666677788999**************99997775..****************** PP

  Anoct_dimer  74 yAEilklkmplkkkeekeeksllsklsklle......kllkkllqlneeeiekpkekkyltapfsreklelFlikdkdtfFtsaqRsrivyeILkrtk 165
                  +A + +  m + +++  ++ sl++  +  ++       +l   l l  ++ + + e+ +    f+++++e F+  +k  +F+s +R+r+vy I++ ++
   KOO22503.1 154 EAGRTETEMLVTQEVA-RSLSLATAPTPSFNlrnipgLYLL--LWLFCDKGK-EAEEMRSYRDFDEDEIEIFER-KKGRLFSSLERQRLVYSIVEGAE 246
                  ***********96433.333332222222222223322212..222222222.2445555678*********99.999***************99776 PP

  Anoct_dimer 166 y 166
                   
   KOO22503.1 247 E 247
                  5 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 0.3
  Anoct_dimer   63 kihaPwevlcryAEilklkmplkkkee.kee 92  
                   ++ a+++v  ++AEi  lk  l+++++ +++
   KOO22503.1 1277 RLDATMKVEQTKAEIAALKKRLNESTDgQRS 1307
                   578999***************9975553333 PP

>> MerC  MerC mercury resistance protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.6   9.5e-05      0.57      14      82 ..     330     393 ..     328     449 .. 0.76
   2 ?   -4.6   0.5         3   1.8e+04      39      76 ..    1219    1231 ..    1211    1241 .. 0.46

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 9.5e-05
        MerC  14 hClllPvllallpllglsflasellhqvllilvvaigllalvvgyrrhrktsvlvlgalGllillvalf 82 
                  C+++  ll+++++++ + ++++l hqv  +++     +a+++++ +h +t++++l++l+l+++++++ 
  KOO22503.1 330 TCAITLGLLMASAMVAGM-FKQPL-HQVRDYFGE---SMAFYFAWMEHYETYLIYLAILALVAIAAGAS 393
                 688866666666655554.56665.999999975...56899**********************99875 PP

  == domain 2  score: -4.6 bits;  conditional E-value: 3
        MerC   39 hqvllilvvaigllalvvgyrrhrktsvlvlgalGlli 76  
                  +                         ++lvl+++  ++
  KOO22503.1 1219 W-------------------------QMLVLFLVEHVL 1231
                  3.........................333333333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1323 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1112  (0.0620224); expected 358.6 (0.02)
Passed bias filter:                      671  (0.0374254); expected 358.6 (0.02)
Passed Vit filter:                        52  (0.00290033); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.94u 0.28s 00:00:01.22 Elapsed: 00:00:00.41
# Mc/sec: 9592.22
//
Query:       KOO22504.1  [L=390]
Description: DNAj-like subfamily a member 1 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.3e-14   54.1   0.6    4.1e-14   52.5   0.2    2.1  2  DnaJ       DnaJ domain
  ------ inclusion threshold ------
      0.094   12.8   0.0       0.24   11.5   0.0    1.6  1  Hormone_3  Pancreatic hormone peptide


Domain annotation for each model (and alignments):
>> DnaJ  DnaJ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.5   0.2   4.5e-18   4.1e-14       2      63 .]      66     139 ..      65     139 .. 0.91
   2 ?   -1.7   0.0      0.38   3.4e+03      20      33 ..     300     313 ..     293     321 .. 0.68

  Alignments for each domain:
  == domain 1  score: 52.5 bits;  conditional E-value: 4.5e-18
                 HHHHHTSSTTG-HHHHHHHHHHHHHHHSTTTS............CCHHHHHHHHHHHHHHHHHHTSHHHHHHHH CS
        DnaJ   2 yYeiLgvskdasedeIkkaYrklalkyHPDkn............pkdpeaeekFkeineAyevLsdpekRkqYD 63 
                 yY++L+v + a + e+kk Y++ +lk+HPDk             +++p ++e+F  +++AyevLsd++ R  YD
  KOO22504.1  66 YYDMLEVVPGAAHTELKKGYKQASLKVHPDKLqaqrnagvgeaaDDEPPSDEAFLAVKAAYEVLSDAQLRDLYD 139
                 9*****************************6656667898888667779999*********************9 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 0.38
                 HHHHHHHHHSTTTS CS
        DnaJ  20 aYrklalkyHPDkn 33 
                  Y+kl ++  P + 
  KOO22504.1 300 HYYKLLQQQQPRRT 313
                 57777777666655 PP

>> Hormone_3  Pancreatic hormone peptide
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   2.6e-05      0.24      10      29 ..     285     304 ..     279     306 .. 0.91

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 2.6e-05
                 TS-HHHHHHHHHHHHHHHHH CS
   Hormone_3  10 daspEeLakYyaaLrhYlnl 29 
                 +aspE++ ++ ++ +hY+ l
  KOO22504.1 285 YASPEQWTQFAQQTEHYYKL 304
                 79****************87 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (390 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       585  (0.0326287); expected 358.6 (0.02)
Passed bias filter:                      454  (0.0253221); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.47u 0.26s 00:00:00.73 Elapsed: 00:00:00.41
# Mc/sec: 2869.62
//
Query:       KOO22505.1  [L=623]
Description: heat shock protein hsp90 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
   6.9e-102  342.0   0.0    2.1e-99  333.8   0.0    2.0  2  HSP90        Hsp90 protein
      2e-13   50.3   0.3    3.8e-13   49.5   0.3    1.4  1  HATPase_c_3  Histidine kinase-, DNA gyrase B-, and HSP90-like
    2.5e-10   40.8   0.1    4.8e-10   39.9   0.1    1.5  1  HATPase_c    Histidine kinase-, DNA gyrase B-, and HSP90-like


Domain annotation for each model (and alignments):
>> HSP90  Hsp90 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.1   0.1   0.00037       2.2       2      25 ..     181     204 ..     180     208 .. 0.87
   2 !  333.8   0.0  3.5e-103   2.1e-99      77     489 ..     205     605 ..     203     622 .. 0.90

  Alignments for each domain:
  == domain 1  score: 7.1 bits;  conditional E-value: 0.00037
                 GGSHHHHHHHHHHCCTTSSS-EEE CS
       HSP90   2 yleekklkelvkkySeFinfpiyl 25 
                 ++++ ++++ ++kyS+F+ fpi++
  KOO22505.1 181 FSQRFHIEQNIRKYSNFVGFPITV 204
                 77788999**************97 PP

  == domain 2  score: 333.8 bits;  conditional E-value: 3.5e-103
                 EEEEESXXSXGGGSXGGGSXHHHHHHHHHHTTTTTSXXSEEEEEEEXSSSXEEEEEEEXSSXXTTTTTTTTTSXXTTEEEEETTEEEESXXTTSSXGGG CS
       HSP90  77 ewellNkqkpiWlrkpkevteeeYkeFYkslskdsedplavkhfsaegevefkaiLfvPkrapsdlfekykkkkknnikLYvrrVfitdefedllPkyL 175
                 + +++N+  ++W+++++evt e++++FY+ +++  +dp ++ hf+a+  ++++a+++vP++  ++       ++++ ++LY r+V+i+ ++e llP+++
  KOO22505.1 205 DGTRVNTLEALWTKSKNEVTVEQHADFYRYVAQAFDDPRYTLHFQADSPLSIRALFYVPQSHMEKWGM---ARQDRGVHLYSRKVLIQSRCETLLPEWM 300
                 56789******************************************************998777665...468999********************** PP

                 TTXEEEEEESSSXSSSTHHHHHTCHHHHHHHHHHHHHHHHHHHTSXH.HH..HHTHHHHHHHHHHHHHHHXGGGHHHHHTTXEEEETTEEE.EEEEHHH CS
       HSP90 176 sFvkGvvdsddLPLNvsREtlqqnkilkvikkklvrKvlemlkklae.ekeeykkfykefsknlklGiiedsanrkklakLlrfkssksee.eltsLed 272
                 +F+kGvvds+dLPLN+sREt+q++ +++ ++  l ++v++ l++ a+ ++  + +fy+ef++ lk G++ d  n++++akLlrf+ss+ +  el+sL+d
  KOO22505.1 301 RFLKGVVDSEDLPLNISRETMQDSLLMRKLSTVLAKRVVKFLQERAKiDQAAFISFYQEFGQYLKEGVYTDFDNKHEIAKLLRFESSRGTPgELISLDD 399
                 ******************************************9987725566***********************************76544******* PP

                 HHHHSXTTX.XEEEEEEXSSHHHHHTSGGGHHHHHTTXXEEEEXSTTHHHHHHTXSEETTEEEEETTBSTXXXXXXHHHHHHHHHHHHHHHHHHHHHHH CS
       HSP90 273 Yvermkekq.ksiYyiageskeevekspflerlkkkgyevlylvdpiDeyvvqqlkeyegkklvnvakegleleeeeeekkkkeelkkkfeeltkllke 370
                 Yv rmk +q ++i+++ + s++++ +s+++e++k+kg+evl+l+ ++De+v+++l +y+gk l + +  +l +e+++ +  + +   ++ + l +++ +
  KOO22505.1 400 YVGRMKPEQgDEIFWLLAPSRDSALSSAYMESFKAKGVEVLLLYSTVDEFVMTNLMQYSGKSLISAEAAKLAVEDSS-ASGAAKLSVEEAKGLQEWMTK 497
                 ******999578***************************************************99999999996655.5556666778899******99 PP

                 TTTTTESEEEEXSSXSSXSEEEEBXTTSXXHHHHHHHHHHHHHHHSSTSSSSSXEEEEEXTTSHHHHHHHHHHHHTTTXHHHHHHHHHHHHHHHHHTTX CS
       HSP90 371 vlkdkvekvkvserlvdsPcvlvtseygwsanmerimkaqalrdkskssymsskktleinprhpiikeLkkkveedkedeeakdlaellyetallesGf 469
                 ++ d v++vk+s+rlvdsP+++v  e   sa m+r+m         ++  +   +tlein  hpii +L    + +   e a+++a +l+ +al+++G 
  KOO22505.1 498 AV-DGVKEVKLSSRLVDSPAIVVGHE---SASMRRMMTMVES---GRAP-ALPPQTLEINGGHPIIVALAAARKVE--PEMASKVASQLFANALIAAGL 586
                 87.68******************543...9*******75443...3333.33689**************9988887..56999***************9 PP

                 XXSXHHHHHHHHHHHHTTTT CS
       HSP90 470 sledpasfakrierllklsl 489
                  l+dp+++  +++ ll   +
  KOO22505.1 587 -LDDPRTMLPNVNALLLDLV 605
                 .********99999987655 PP

>> HATPase_c_3  Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.5   0.3   6.3e-17   3.8e-13       4     100 ..      23     145 ..      19     171 .. 0.83

  Alignments for each domain:
  == domain 1  score: 49.5 bits;  conditional E-value: 6.3e-17
  HATPase_c_3   4 ekAlaelvdNsldAdaen....................vkievnknrgktgeivieDdGkGmseeelknal.rlatsskeakr.........kstslG 71 
                  e+ + elv N+ dA  ++                    ++i+ nk+   +++++i D G Gms+eel++ l ++a+s ++a            ++++G
   KOO22505.1  23 EVFVRELVSNASDALEKRryaaltggggggeeagsnmeISITTNKD---ANTLTIADTGIGMSREELIDNLgTIARSGTKAFAqnlqekgeaAANVIG 117
                  66789*********99999*****************6666666665...57*****************9774799998887643444444445888** PP

  HATPase_c_3  72 kkGiGlklAslslgkkltvitkkegesst 100
                  ++G+G + A++++++++tv+++k g+  +
   KOO22505.1 118 QFGVG-FYAVFMVADEVTVYSRKHGSDVA 145
                  *****.*****************998764 PP

>> HATPase_c  Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.9   0.1     8e-14   4.8e-10       2     110 ..      22     176 ..      21     178 .. 0.66

  Alignments for each domain:
  == domain 1  score: 39.9 bits;  conditional E-value: 8e-14
                 HHHHHHHHHHHHHHHHHHH............HSTTTEEEEEEEEEETEEEEEEEESSSSSTTHHHT.......GTCS.TTCH....HCSTCHTS.TSSS CS
   HATPase_c   2 dekrLrqiisnlvdNavkf............atkageieveikaseddlvisveDnGiGipkedlk.......klfe.kfsq....ddstkrgg.ggtG 75 
                 +e ++r+++sn++d++ k             +  +++ e++i++++d +++++ D+GiG+++e+l        ++++ +f q    +++++ +  g++G
  KOO22505.1  22 KEVFVRELVSNASDALEKRryaaltggggggEEAGSNMEISITTNKDANTLTIADTGIGMSREELIdnlgtiaRSGTkAFAQnlqeKGEAAANViGQFG 120
                 57788888888888888889988877665442244466888887689**************************88888888888884444444337777 PP

                 HHHHHH.......HHHHHHTTTEEEE................EEETTTEEEEEEEEES CS
   HATPase_c  76 lGlsiv.......kklvelmgGeiwv................esepgrGttftftlpl 110
                 +G++ v         +++++g ++                  +   + Gtt++++l+ 
  KOO22505.1 121 VGFYAVfmvadevTVYSRKHGSDVAHcwrstgdgsyalseatNV--EPGTTIVLKLKS 176
                 77777733344322233345543333444555555554442222..349999999886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (623 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       615  (0.034302); expected 358.6 (0.02)
Passed bias filter:                      482  (0.0268838); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.60u 0.25s 00:00:00.85 Elapsed: 00:00:00.41
# Mc/sec: 4600.95
//
Query:       KOO22506.1  [L=602]
Description: hypothetical protein Ctob_000319 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (602 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       717  (0.0399911); expected 358.6 (0.02)
Passed bias filter:                      335  (0.0186848); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.53u 0.30s 00:00:00.83 Elapsed: 00:00:00.44
# Mc/sec: 4068.67
//
Query:       KOO22507.1  [L=180]
Description: v-type proton ATPase 16 kda proteolipid [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.4e-32  111.8  39.1    2.3e-19   69.5  17.8    2.1  2  ATP-synt_C     ATP synthase subunit C


Domain annotation for each model (and alignments):
>> ATP-synt_C  ATP synthase subunit C
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.6  13.3   4.3e-17   7.8e-13       1      60 []      31      90 ..      31      90 .. 0.98
   2 !   69.5  17.8   1.3e-23   2.3e-19       1      60 []     113     172 ..     113     172 .. 0.99

  Alignments for each domain:
  == domain 1  score: 48.6 bits;  conditional E-value: 4.3e-17
                HHHHHHH.GGGHHHHHHHHHHHHHHHHHHHHSGHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
  ATP-synt_C  1 lgaglavGlsalgsGigiGkagsagiravarnpklftksliilafaeaialygLivalil 60
                +ga++a++++ lg+++g++k g +  ++ + +p+l +ks+i++++a+++++ygLi+a+i+
  KOO22507.1 31 MGAAVALIFANLGAAYGTAKSGVGVSSMGVMKPDLVMKSIIPVVMAGVLGIYGLIIAVII 90
                69********************************************************98 PP

  == domain 2  score: 69.5 bits;  conditional E-value: 1.3e-23
                 HHHHHHH.GGGHHHHHHHHHHHHHHHHHHHHSGHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
  ATP-synt_C   1 lgaglavGlsalgsGigiGkagsagiravarnpklftksliilafaeaialygLivalil 60 
                 l+agla+Gls++++Gi+iG++g+ag+ra+a++ kl++++++il+faea++l gLiv+lil
  KOO22507.1 113 LAAGLACGLSGMAAGIAIGIVGDAGVRASAQQTKLYVGMVLILIFAEALGLCGLIVGLIL 172
                 79********************************************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (180 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       559  (0.0311785); expected 358.6 (0.02)
Passed bias filter:                      218  (0.0121591); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.21s 00:00:00.62 Elapsed: 00:00:00.39
# Mc/sec: 1380.84
//
Query:       KOO22508.1  [L=276]
Description: hypothetical protein Ctob_005255 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (276 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       198  (0.0110436); expected 358.6 (0.02)
Passed bias filter:                      170  (0.00948185); expected 358.6 (0.02)
Passed Vit filter:                         9  (0.00050198); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.41u 0.25s 00:00:00.65 Elapsed: 00:00:00.41
# Mc/sec: 2027.11
//
Query:       KOO22509.1  [L=325]
Description: hypothetical protein Ctob_005257 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (325 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       499  (0.027832); expected 358.6 (0.02)
Passed bias filter:                      381  (0.0212505); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.48u 0.25s 00:00:00.73 Elapsed: 00:00:00.42
# Mc/sec: 2302.27
//
Query:       KOO22510.1  [L=728]
Description: hypothetical protein Ctob_005252 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.5e-05   23.4   0.2    0.00017   21.3   0.2    2.2  2  EF-hand_6  EF-hand domain
    0.00026   20.3   0.1    0.00077   18.8   0.1    1.9  1  EF-hand_1  EF hand
     0.0027   17.1   0.3     0.0077   15.7   0.3    1.8  2  EF-hand_5  EF hand
     0.0034   17.8   0.1     0.0071   16.8   0.1    1.5  1  EF-hand_7  EF-hand domain pair
  ------ inclusion threshold ------
       0.06   13.7   0.9        1.7    8.9   0.0    2.9  3  DUF1772    Domain of unknown function (DUF1772)


Domain annotation for each model (and alignments):
>> EF-hand_6  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.3   0.2   4.7e-08   0.00017       2      26 ..     397     421 ..     396     425 .. 0.91
   2 ?   -2.7   0.0       2.3   8.2e+03      16      27 ..     427     438 ..     427     441 .. 0.86

  Alignments for each domain:
  == domain 1  score: 21.3 bits;  conditional E-value: 4.7e-08
   EF-hand_6   2 lreaFklfDkdgdGkidaeElrkal 26 
                 +r++F++fD+d +G++d++Elr+++
  KOO22510.1 397 VRQVFHAFDVDESGELDTDELRDLF 421
                 799*******************986 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 2.3
   EF-hand_6  16 kidaeElrkalr 27 
                 ki++++l +++r
  KOO22510.1 427 KISRDDLSACIR 438
                 69*****99998 PP

>> EF-hand_1  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.8   0.1   2.1e-07   0.00077       2      28 ..     397     423 ..     396     424 .. 0.91

  Alignments for each domain:
  == domain 1  score: 18.8 bits;  conditional E-value: 2.1e-07
                 HHHHHHHHTTTSSSEEEHHHHHHHHHH CS
   EF-hand_1   2 lkeiFrefDkDgdGkIdfeEfkellkk 28 
                 ++++F  fD+D +G +d +E+++l+ +
  KOO22510.1 397 VRQVFHAFDVDESGELDTDELRDLFVA 423
                 789********************9865 PP

>> EF-hand_5  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.3   2.2e-06    0.0077       2      24 ..     398     420 ..     397     422 .. 0.89
   2 ?   -3.4   0.0       2.3   8.3e+03      15      22 ..     427     434 ..     427     436 .. 0.83

  Alignments for each domain:
  == domain 1  score: 15.7 bits;  conditional E-value: 2.2e-06
                 HHHHHHH-SS-SSCE-HHHHHHH CS
   EF-hand_5   2 kdtFqaiDlNgDGkIskeELktl 24 
                 +++F a+D++ +G ++ +EL+ l
  KOO22510.1 398 RQVFHAFDVDESGELDTDELRDL 420
                 679*****************984 PP

  == domain 2  score: -3.4 bits;  conditional E-value: 2.3
                 CE-HHHHH CS
   EF-hand_5  15 kIskeELk 22 
                 kIs++ L 
  KOO22510.1 427 KISRDDLS 434
                 8***9986 PP

>> EF-hand_7  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   0.1     2e-06    0.0071       2      62 ..     395     452 ..     394     460 .. 0.81

  Alignments for each domain:
  == domain 1  score: 16.8 bits;  conditional E-value: 2e-06
   EF-hand_7   2 eklkeaFkelDtdgdgyldkeellrllrkifqgagegsklsdeelellfkef....DtdkdGvis 62 
                 ++++++F ++D+d +g ld +el++l+           k+s++ l ++++++    D ++ Gv++
  KOO22510.1 395 TRVRQVFHAFDVDESGELDTDELRDLFV------ALHPKISRDDLSACIRCMsgyvDPSS-GVLT 452
                 57899**********************9......89999999999999999966655544.5555 PP

>> DUF1772  Domain of unknown function (DUF1772)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.7   0.3     0.082   2.9e+02      41      80 ..     220     260 ..     199     272 .. 0.62
   2 ?    8.9   0.0   0.00048       1.7       9      96 ..     293     383 ..     283     423 .. 0.69
   3 ?   -3.5   0.0       3.2   1.2e+04       7      22 ..     640     655 ..     640     669 .. 0.74

  Alignments for each domain:
  == domain 1  score: 1.7 bits;  conditional E-value: 0.082
     DUF1772  41 p..lallsalafa.ylaaraasrgarllylaaaallllsivpy 80 
                 +  ++++s+l ++ + a  +++++a+ ly+  a l++l  +  
  KOO22510.1 220 TiiIVFGSLLTAIfMHAEEHSGDRASVLYI--AFLISLTNMAT 260
                 233555555555556668888888888884..44444445554 PP

  == domain 2  score: 8.9 bits;  conditional E-value: 0.00048
     DUF1772   9 fvvPallslpassslllkqwrrlfkrg.kavfpplallsalafa.ylaaraasrgarllylaaaallllsivpyTllvmvPtNnkLaal........k 96 
                 +vv  l + +a +  l+++     +   + ++p+l ++++++ + y   r +   ++  + a+ +++++ ++p Tl+++     +L ++        k
  KOO22510.1 293 MVVHLLFKHNAAK--LATHI----DSVcRQTLPALYIGVTAGIFiYGIGRGRELYTSVGF-AIMGIFIITMIPATLFFVWVRQGRLGRWqakcikelK 383
                 4455555444333..43333....33448889**99999999997777666666666666.778889999********99888888888666665431 PP

  == domain 3  score: -3.5 bits;  conditional E-value: 3.2
     DUF1772   7 slfvvPallslpasss 22 
                 sl+++P l+s+++ ++
  KOO22510.1 640 SLVTMPGLMSSSTYTD 655
                 78999**999887654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (728 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       557  (0.031067); expected 358.6 (0.02)
Passed bias filter:                      385  (0.0214736); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.61u 0.29s 00:00:00.89 Elapsed: 00:00:00.43
# Mc/sec: 5044.57
//
Query:       KOO22511.1  [L=533]
Description: urea transporter [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.8e-57  194.1  32.1    4.4e-57  193.4  32.1    1.2  1  UT               Urea transporter
    5.2e-07   30.3   0.1    3.1e-06   27.8   0.1    2.4  2  Methyltransf_25  Methyltransferase domain
  ------ inclusion threshold ------
      0.027   14.3   0.0      0.047   13.5   0.0    1.4  1  Methyltransf_31  Methyltransferase domain
       0.19   11.0   0.0       0.34   10.2   0.0    1.3  1  Rsm22            Mitochondrial small ribosomal subunit Rsm22


Domain annotation for each model (and alignments):
>> UT  Urea transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  193.4  32.1   9.8e-61   4.4e-57       9     289 ..     235     508 ..     228     510 .. 0.93

  Alignments for each domain:
  == domain 1  score: 193.4 bits;  conditional E-value: 9.8e-61
                 HGGGT---HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHCT--HHHHHTTTTTHHHHHHHHHHHHHBB--TTHHHHHHHHHH...HHHHHHHHHH CS
          UT   9 gqVvFvnnplsGllilvalflqspwlallgllgtvvstltAlllgqdreeieaGlygyNgvLvGlalavflsasllllllvvlgsa...lstlvtaals 104
                 g VvF+n++ sG+l+l+alf ++pwl+ l+++gtv +t tA +++ d+ +i++Gl+gyNg+LvG+a++vf++++ ++l  +v++++    stl+t+ l+
  KOO22511.1 235 GHVVFCNSAASGALMLAALFKGDPWLGTLATIGTVSATTTAKVFNLDSGAIANGLTGYNGCLVGCAFSVFMGTDAWTLPTAVAAAVaagGSTLLTVPLK 333
                 89**********************************************************************9988777777766656689*******7 PP

                 HHHHTTT---TTHHHHHHHHHHHHGGGCSTTSBB-TT---------------HHHHHHHHHHHHHHCCT---HHHHHHHHHHHHHH-HHHHHHHHHHHH CS
          UT 105 svlkkwklpvlTlPFvlvtwllllatgklnklepstllapalleaesssslslpellrgllvgvgqVffldnvlaGllillallissriaallallGsl 203
                   ++   +p +Tl F+++t+ +l+ +++l ++ p +        ++s+    ++++l + lvgv+q+f++++++aG+++l a+ ++s+  a+l+l+Gs+
  KOO22511.1 334 --MACGAVPQFTLAFNMATLSVLAFVRPLWEFSPPP--------DPSAVVGGITDWLCAPLVGVSQIFVVNDPIAGAMMLGAIGVYSPQCAALTLMGSA 422
                 ..56689***********************998887........6788888999********************************************* PP

                 HHHHHHHHTT--HHHHHCTCCCHHHHHHHHHCTTTSB--SCHHHHHHHHHHHHHHHHHHHHHHHT.CCCT---TTHHHHHHHHHHHH CS
          UT 204 lgllaalllgapleaiysGlwGyNavLtaiAlggvflvpswrsallavlgvvltvllqaaltsll.aplglpvlTlPFvlatwlfll 289
                 +g+ ++++lga++ +i++GlwG+Na+Lt +A+g vf+vp+ + ++la  g+v ++l+  + + ++ a lg+pv+TlPF+ ++++++l
  KOO22511.1 423 IGTGTGAVLGASHFDIANGLWGFNAALTSLAVG-VFFVPKLEMYALAGSGAVASTLVFGGAKGIVaAGLGIPVCTLPFCAVASACML 508
                 ********************************8.5889***************999988877665166**************99987 PP

>> Methyltransf_25  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.8   0.1     7e-10   3.1e-06       1      94 [.      90     170 ..      90     172 .. 0.91
   2 ?   -0.4   0.0      0.43   1.9e+03      22      40 ..     171     189 ..     167     198 .. 0.81

  Alignments for each domain:
  == domain 1  score: 27.8 bits;  conditional E-value: 7e-10
                      EEEET-TTSHHHHHHHCTSTSSEEEEEESSHHHHHHHHHHHHHTTTTEEEEESBCCGBSSSTTTEEEEEEESTGGGSSHHHHHHHHHHHHHHEE CS
  Methyltransf_25   1 vLdlGcGtGrltlalakrlgkakvtgvDiseemleaareraeeeglnvefvqgdaedlpfedgsfDlvvssgalhhlsdedlekalkeiarvLk 94 
                      vLdl+cG G  t++          +++D s+ ml+ ar +     ++++f  g+ae++    + +D+v++++a+h ++ + ++++l+++ rv +
       KOO22511.1  90 VLDLCCGVGFSTMEGG--------HAIDTSPMMLNVARFHR----PDLSFSFGNAETYGD-TQGYDVVTIMYAMHEMPGDARKRVLANMMRVAR 170
                      8********8887754........689**********9998....89***********95.569*******99******************987 PP

  == domain 2  score: -0.4 bits;  conditional E-value: 0.43
                      SEEEEEESSHHHHHHHHHH CS
  Methyltransf_25  22 akvtgvDiseemleaarer 40 
                      ++v+ vDi +e+ e+ +++
       KOO22511.1 171 ESVVIVDIHPEFQETLAKK 189
                      689********99988776 PP

>> Methyltransf_31  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.0     1e-05     0.047       3     114 ..      86     182 ..      84     213 .. 0.82

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 1e-05
  Methyltransf_31   3 kglrvlDlGCGtGeltfelaeelgpkaevvGiDiseeaielArenaqklgldnveFeqgdieeleklledekfDlilsnevl..naladpdkil 94 
                       +++vlDl CG G+ t e           + iD s+ ++++Ar ++       ++F+ g++e+   +   + +D+++   ++  +   + + +l
       KOO22511.1  86 TDKTVLDLCCGVGFSTMEGG---------HAIDTSPMMLNVARFHRP-----DLSFSFGNAETYGDT---QGYDVVTIMYAMheMPGDARKRVL 162
                      6789********98887766.........79*************866.....578889999996644...89**********66666688999* PP

  Methyltransf_31  95 eeiervlkpggilliedprl 114
                       ++ rv ++  +++  +p  
       KOO22511.1 163 ANMMRVARESVVIVDIHPEF 182
                      ******99888888666663 PP

>> Rsm22  Mitochondrial small ribosomal subunit Rsm22
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.0   7.5e-05      0.34     102     140 ..     139     177 ..     111     179 .. 0.88

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 7.5e-05
       Rsm22 102 eeadLviisyvLleledesreklvknlWakaskilvivE 140
                 +  d+v+i y ++e+  + r+ ++ n+ + a++ +viv+
  KOO22511.1 139 QGYDVVTIMYAMHEMPGDARKRVLANMMRVARESVVIVD 177
                 3449*********************************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (533 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       535  (0.0298399); expected 358.6 (0.02)
Passed bias filter:                      318  (0.0177366); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.52u 0.26s 00:00:00.78 Elapsed: 00:00:00.41
# Mc/sec: 3895.99
//
Query:       KOO22512.1  [L=140]
Description: ankyrin neuronal-like protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (140 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       552  (0.0307881); expected 358.6 (0.02)
Passed bias filter:                      230  (0.0128284); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.24s 00:00:00.60 Elapsed: 00:00:00.38
# Mc/sec: 1099.00
//
Query:       KOO22513.1  [L=274]
Description: acylpyruvase mitochondrial [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.3e-51  175.4   0.0    1.6e-51  175.0   0.0    1.1  1  FAA_hydrolase  Fumarylacetoacetate (FAA) hydrolase family


Domain annotation for each model (and alignments):
>> FAA_hydrolase  Fumarylacetoacetate (FAA) hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  175.0   0.0   9.1e-56   1.6e-51       2     216 ..      36     249 ..      35     251 .. 0.91

  Alignments for each domain:
  == domain 1  score: 175.0 bits;  conditional E-value: 9.1e-56
                    EEEEEEE--SHHHHHTTT.-SS-EEEE.EEGGGE.EETTE..EE-TTSSSS-EE..............EEEEEEEESS-B--T--HHHHHTTEEEE CS
  FAA_hydrolase   2 ivcdglnyaehvreagkaaeeppdrhi.plepvfflkrasslvgpgdpirrPag........sekldyEvELavvigkplrevlsveeAedaiaGy 88 
                     vc+g+ny++h++e+ ++   p+++ + + epv+flk+++s   pg+++++P           + +++E+ELav+igk +++v s  +A+ aiaGy
     KOO22513.1  36 AVCVGKNYRDHITELVQL--GPSWKAEeEPEPVLFLKPTTSYAFPGTQLVLPPRrtgarfpvRNGIHHELELAVIIGKTVKDV-SEGDAMGAIAGY 128
                    69************9655..5666543133588*******************9999999998788******************.9*********** PP

                    EEEEEEE-SBGGG---..HHHHHHTGGGEEEEEE-B--B-.STT---SS-EEEEEETTEEEEEEEGGGTTTSHHHHHHHHHHHH-B-TT-EEEEEE CS
  FAA_hydrolase  89 tllnDvsaRdlqaeek.aplgwflgksfdtftpiGpwivtpdeledpedlelrlrvngeevqdsntkdmifspaeliahlsagltLepGdliltGT 183
                    +l++D++ Rd q+++k + ++w+ +ks+dtf p++      ++ ed++ l+++l vng+++q  ++  mi+s++ lia +s+++tLepGdli+tGT
     KOO22513.1 129 MLALDITERDEQTAAKdKGMPWTVSKSYDTFLPLSDPF-ELEAGEDWRTLRMWLDVNGQRRQACEAGAMIHSVPSLIAFISRIMTLEPGDLIVTGT 223
                    ****************7788*****************9.99******************************************************* PP

                    S.......S--EE--TT-EEEEEETTTEEEEEE CS
  FAA_hydrolase 184 psgvgaeeeslkflkdgDeveveieglGelrnr 216
                    psgvg        l +gD++++ i g  e++ +
     KOO22513.1 224 PSGVG-------SLVPGDRITAGIVGHVEMAVE 249
                    ***99.......4*******9999766665555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (274 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       319  (0.0177924); expected 358.6 (0.02)
Passed bias filter:                      286  (0.0159518); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.26s 00:00:00.68 Elapsed: 00:00:00.41
# Mc/sec: 1995.12
//
Query:       KOO22514.1  [L=147]
Description: hypothetical protein Ctob_005259, partial [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (147 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       558  (0.0311228); expected 358.6 (0.02)
Passed bias filter:                      471  (0.0262703); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.24s 00:00:00.61 Elapsed: 00:00:00.39
# Mc/sec: 1139.27
//
Query:       KOO22515.1  [L=378]
Description: tetratricopeptide repeat protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    0.00022   21.1   2.1      0.049   13.8   0.1    3.9  4  TPR_2        Tetratricopeptide repeat
     0.0026   17.5   0.0      0.011   15.6   0.0    2.1  1  TPR_1        Tetratricopeptide repeat
     0.0027   18.0   0.3      0.037   14.4   0.2    2.8  3  TPR_17       Tetratricopeptide repeat
  ------ inclusion threshold ------
      0.024   15.3  13.5      0.027   15.1   3.9    3.9  5  TPR_16       Tetratricopeptide repeat
      0.024   15.4  16.7      0.029   15.2   2.2    5.1  5  TPR_14       Tetratricopeptide repeat
      0.069   12.9   0.1        1.5    8.6   0.0    2.6  2  Regnase_1_C  Endoribonuclease Regnase 1/ ZC3H12 C-terminal do
       0.63   10.6   8.4       0.25   11.9   0.9    3.2  4  TPR_19       Tetratricopeptide repeat
        3.5    7.8  16.3       0.34   11.1   4.8    3.8  4  TPR_9        Tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> TPR_2  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.1       3.2   7.2e+03      13      24 ..     109     120 ..     106     122 .. 0.74
   2 ?    3.1   0.0     0.058   1.3e+02      13      33 ..     242     262 ..     239     263 .. 0.88
   3 !   13.8   0.1   2.2e-05     0.049       1      32 [.     264     295 ..     264     297 .. 0.97
   4 ?    1.0   0.0      0.27     6e+02      18      33 ..     327     342 ..     326     343 .. 0.86

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 3.2
       TPR_2  13 klgdyeeAleaf 24 
                 ++ +++eA + +
  KOO22515.1 109 EAEEWDEAYNVW 120
                 678899998766 PP

  == domain 2  score: 3.1 bits;  conditional E-value: 0.058
       TPR_2  13 klgdyeeAleafekAleldPn 33 
                 +l ++ +A+++++++l+ +Pn
  KOO22515.1 242 ELEQPVDAHALLDQVLAQAPN 262
                 5778899*************9 PP

  == domain 3  score: 13.8 bits;  conditional E-value: 2.2e-05
       TPR_2   1 aealynlGlayyklgdyeeAleafekAleldP 32 
                 aea+++++ + y + ++ +Al++ e+ l+l+P
  KOO22515.1 264 AEAWNQRATLRYLQRRHLDALDDVERTLALNP 295
                 89*****************************9 PP

  == domain 4  score: 1.0 bits;  conditional E-value: 0.27
       TPR_2  18 eeAleafekAleldPn 33 
                 e A++ +e+++el+P+
  KOO22515.1 327 ELARRRLERVVELYPG 342
                 569999*********7 PP

>> TPR_1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.0   4.7e-06     0.011       1      32 [.     264     295 ..     264     297 .. 0.98

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 4.7e-06
                 HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHST CS
       TPR_1   1 akalynlGnayfklgkydeAleyyekALelnP 32 
                 a+a+++++ + + + ++ +Al++ e+ L lnP
  KOO22515.1 264 AEAWNQRATLRYLQRRHLDALDDVERTLALNP 295
                 89*****************************9 PP

>> TPR_17  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.0       7.2   1.6e+04      13      23 ..     146     156 ..     145     163 .. 0.70
   2 !   14.4   0.2   1.7e-05     0.037       2      29 ..     253     280 ..     252     285 .. 0.81
   3 ?   -0.2   0.0      0.77   1.7e+03       3      19 ..     334     350 ..     333     350 .. 0.91

  Alignments for each domain:
  == domain 1  score: -3.3 bits;  conditional E-value: 7.2
      TPR_17  13 adaynnLAell 23 
                 ++a ++LA+l 
  KOO22515.1 146 VVAAQQLAKLR 156
                 56788888876 PP

  == domain 2  score: 14.4 bits;  conditional E-value: 1.7e-05
      TPR_17   2 ylkaleldPnnadaynnLAelllknGdl 29 
                 + ++l++ Pn a+a+n++A+l + + ++
  KOO22515.1 253 LDQVLAQAPNWAEAWNQRATLRYLQRRH 280
                 67899****************8766555 PP

  == domain 3  score: -0.2 bits;  conditional E-value: 0.77
      TPR_17   3 lkaleldPnnadaynnL 19 
                 ++++el+P +  a++nL
  KOO22515.1 334 ERVVELYPGSESAHFNL 350
                 8999******9999998 PP

>> TPR_16  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.0       2.7     6e+03      12      17 ..      28      33 ..      17      56 .. 0.56
   2 ?   -2.9   0.1         5   1.1e+04      19      43 ..     169     188 ..     167     191 .. 0.69
   3 ?   -3.3   0.0         7   1.6e+04      16      39 ..     196     219 ..     194     222 .. 0.62
   4 ?   15.1   3.9   1.2e-05     0.027       5      62 ..     238     292 ..     234     305 .. 0.89
   5 ?    4.6   0.0     0.023        52      13      40 ..     326     350 ..     319     353 .. 0.83

  Alignments for each domain:
  == domain 1  score: -2.0 bits;  conditional E-value: 2.7
      TPR_16 12 dyddAa 17
                d+ + a
  KOO22515.1 28 DWMASA 33
                333344 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 5
      TPR_16  19 aleaalkrdpssPdaaeAllllgda 43 
                 al++al +      +a++ ++ g  
  KOO22515.1 169 ALTTALFAV-----HAASTFGTGAH 188
                 566666666.....99998888865 PP

  == domain 3  score: -3.3 bits;  conditional E-value: 7
      TPR_16  16 AaaaleaalkrdpssPdaaeAlll 39 
                 Aa++ +++  r+p+     eA+l+
  KOO22515.1 196 AAELIRQVMVRFPRLVSEGEAALW 219
                 777888877777444445555555 PP

  == domain 4  score: 15.1 bits;  conditional E-value: 1.2e-05
      TPR_16   5 raalragdyddAaaaleaalkrdpssPdaaeAllllgdaalrqgrlaeAaalyraalr 62 
                   ++++ ++ dA a+l+++l+++   P  aeA++ ++ +++ q r+ +A++ +++ l+
  KOO22515.1 238 ERLVELEQPVDAHALLDQVLAQA---PNWAEAWNQRATLRYLQRRHLDALDDVERTLA 292
                 5689999****************...************************76666555 PP

  == domain 5  score: 4.6 bits;  conditional E-value: 0.023
      TPR_16  13 yddAaaaleaalkrdpssPdaaeAllll 40 
                  + A+++le++++++   P    A+++l
  KOO22515.1 326 LELARRRLERVVELY---PGSESAHFNL 350
                 688************...6666688776 PP

>> TPR_14  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.0       4.9   1.1e+04      20      25 ..      32      37 ..      17      51 .. 0.56
   2 ?    0.4   0.1      0.74   1.7e+03      24      42 ..     104     124 ..      97     128 .. 0.62
   3 ?   -0.8   0.3       1.7   3.9e+03      13      27 ..     148     162 ..     146     176 .. 0.64
   4 ?   15.2   2.2   1.3e-05     0.029       2      43 ..     231     272 ..     230     273 .. 0.92
   5 ?    6.2   0.0    0.0097        22      18      41 ..     327     350 ..     321     371 .. 0.92

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 4.9
      TPR_14 20 Aiallr 25
                ++++l+
  KOO22515.1 32 SAQYLD 37
                234444 PP

  == domain 2  score: 0.4 bits;  conditional E-value: 0.74
      TPR_14  24 lrralalaPddae..awllla 42 
                 l+ al++  +d++  +w l+a
  KOO22515.1 104 LEMALEAEEWDEAynVWQLMA 124
                 677777665555433555554 PP

  == domain 3  score: -0.8 bits;  conditional E-value: 1.7
      TPR_14  13 alGdpdeAiallrra 27 
                 a++++++ ++ll+r 
  KOO22515.1 148 AAQQLAKLRDLLQRQ 162
                 567777777777775 PP

  == domain 4  score: 15.2 bits;  conditional E-value: 1.3e-05
      TPR_14   2 eallalaeallalGdpdeAiallrralalaPddaeawlllaq 43 
                 +a+l+ +e l +l++p +A all+++la+aP+ aeaw + a 
  KOO22515.1 231 DAQLRKVERLVELEQPVDAHALLDQVLAQAPNWAEAWNQRAT 272
                 688999999****************************88775 PP

  == domain 5  score: 6.2 bits;  conditional E-value: 0.0097
      TPR_14  18 deAiallrralalaPddaeawlll 41 
                 + A++ l+r+++l+P+++ a++ l
  KOO22515.1 327 ELARRRLERVVELYPGSESAHFNL 350
                 569999*************99876 PP

>> Regnase_1_C  Endoribonuclease Regnase 1/ ZC3H12 C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.9   0.1      0.17   3.9e+02      29      39 ..     143     153 ..     140     154 .. 0.90
   2 ?    8.6   0.0   0.00067       1.5      19      33 ..     197     211 ..     195     217 .. 0.89

  Alignments for each domain:
  == domain 1  score: 0.9 bits;  conditional E-value: 0.17
  Regnase_1_C  29 nPhllDaQeLA 39 
                  +P ++ aQ+LA
   KOO22515.1 143 SPSVVAAQQLA 153
                  799*******9 PP

  == domain 2  score: 8.6 bits;  conditional E-value: 0.00067
  Regnase_1_C  19 pdLVraVMarnPhll 33 
                  ++L+r+VM r+P+l+
   KOO22515.1 197 AELIRQVMVRFPRLV 211
                  79**********997 PP

>> TPR_19  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.1       4.6     1e+04      36      47 ..     108     119 ..     105     134 .. 0.59
   2 ?   11.9   0.9   0.00011      0.25      25      63 ..     230     268 ..     219     273 .. 0.81
   3 ?   -2.0   0.0       2.4   5.4e+03       4      27 ..     277     300 ..     274     307 .. 0.77
   4 ?    1.6   0.0      0.18     4e+02      10      31 ..     329     350 ..     323     370 .. 0.81

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 4.6
      TPR_19  36 lalgqldeAeal 47 
                 l++ ++deA ++
  KOO22515.1 108 LEAEEWDEAYNV 119
                 455566666444 PP

  == domain 2  score: 11.9 bits;  conditional E-value: 0.00011
      TPR_19  25 aearllLAeallalgqldeAealLdalpeedpddaryas 63 
                 ++a+l+ +e l++l q+ +A alLd++++++p++a++++
  KOO22515.1 230 LDAQLRKVERLVELEQPVDAHALLDQVLAQAPNWAEAWN 268
                 577888888899999999999999999999999988775 PP

  == domain 3  score: -2.0 bits;  conditional E-value: 2.4
      TPR_19   4 egdyaeAlalleqalqedpknaea 27 
                 + ++ +Al+  e+ l+ +p +  a
  KOO22515.1 277 QRRHLDALDDVERTLALNPIHFGA 300
                 678889999999999999976555 PP

  == domain 4  score: 1.6 bits;  conditional E-value: 0.18
      TPR_19  10 AlalleqalqedpknaearllL 31 
                 A ++le++ + +p+++ a  +L
  KOO22515.1 329 ARRRLERVVELYPGSESAHFNL 350
                 8899999999999998887765 PP

>> TPR_9  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.0       2.8   6.2e+03      24      37 ..      44      56 ..      28      57 .. 0.76
   2 ?   -0.6   0.3      0.65   1.5e+03       4      22 ..     106     124 ..     104     132 .. 0.85
   3 ?   11.1   4.8   0.00015      0.34       5      60 ..     240     295 ..     234     311 .. 0.89
   4 ?    2.7   0.0     0.063   1.4e+02      40      72 ..     321     353 ..     308     360 .. 0.82

  Alignments for each domain:
  == domain 1  score: -2.6 bits;  conditional E-value: 2.8
       TPR_9 24 laPddpeerrdRGl 37
                l+Pd+p ++r RG+
  KOO22515.1 44 LDPDHP-LHRNRGV 56
                567765.6778876 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 0.65
       TPR_9   4 iaireedweralavverll 22 
                  a+++e+w++a  v +++ 
  KOO22515.1 106 MALEAEEWDEAYNVWQLMA 124
                 58999*******9999986 PP

  == domain 3  score: 11.1 bits;  conditional E-value: 0.00015
       TPR_9   5 aireedweralavverllllaPddpeerrdRGlllaqlGclsaAladLeaylalap 60 
                 + + e+   a a ++ +l+ aP+ +e +  R+ l++ + +   Al+d e+ lal+p
  KOO22515.1 240 LVELEQPVDAHALLDQVLAQAPNWAEAWNQRATLRYLQRRHLDALDDVERTLALNP 295
                 56678888899999****************************************99 PP

  == domain 4  score: 2.7 bits;  conditional E-value: 0.063
       TPR_9  40 aqlGclsaAladLeaylalapdapdaeairaqL 72 
                 a ++ l+ A++ Le+ ++l p  + a+   +qL
  KOO22515.1 321 AGSEGLELARRRLERVVELYPGSESAHFNLEQL 353
                 66677889*************998888766666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (378 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       719  (0.0401026); expected 358.6 (0.02)
Passed bias filter:                      401  (0.022366); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.51u 0.23s 00:00:00.74 Elapsed: 00:00:00.41
# Mc/sec: 2751.33
//
Query:       KOO22516.1  [L=314]
Description: hypothetical protein Ctob_005256 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.91    8.7   5.5        1.2    8.3   5.5    1.1  1  ORC6      Origin recognition complex subunit 6 (ORC6)


Domain annotation for each model (and alignments):
>> ORC6  Origin recognition complex subunit 6 (ORC6)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.3   5.5   6.9e-05       1.2     127     198 ..      11      87 ..       4     122 .. 0.58

  Alignments for each domain:
  == domain 1  score: 8.3 bits;  conditional E-value: 6.9e-05
        ORC6 127 lsa...sksssplkrrrklaneedgeeeeed.apswvstsirdsrpeisrtlspskslgdesilfndss..ddekkse 198
                 +++   s+s+ plkr  ++a +e + +e+++ +ps vs+s r s  e s   sps  ++ +++    ss  ++++  e
  KOO22516.1  11 SPVpssSASPMPLKRMSARAADEPDRTESPSvSPS-VSPSRRTSTVEMSPSVSPSRRTSTVEMDSLGSSpsRRTSTVE 87 
                 333556899999***************99997884.666666444444444444443333322222222222222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (314 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       482  (0.0268838); expected 358.6 (0.02)
Passed bias filter:                      290  (0.0161749); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.26s 00:00:00.70 Elapsed: 00:00:00.41
# Mc/sec: 2310.77
//
Query:       KOO22517.1  [L=931]
Description: hypothetical protein Ctob_005254 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.4e-09   37.3   3.4      0.011   15.6   0.1    3.7  3  TPR_1           Tetratricopeptide repeat
    1.3e-07   31.7   4.2    1.3e-07   31.7   4.2    4.1  4  TPR_9           Tetratricopeptide repeat
    2.3e-07   31.4   2.1    2.3e-07   31.4   2.1    5.3  6  TPR_16          Tetratricopeptide repeat
    3.1e-07   30.0  14.5     0.0032   17.5   0.2    4.5  4  TPR_2           Tetratricopeptide repeat
    4.4e-07   30.2   0.0    1.2e-06   28.8   0.0    1.8  1  Aha1_N          Activator of Hsp90 ATPase, N-terminal
     0.0019   18.7   2.2     0.0019   18.7   2.2    4.0  3  TPR_19          Tetratricopeptide repeat
     0.0023   17.5   2.7        2.6    7.8   0.0    3.5  3  TPR_11          TPR repeat
  ------ inclusion threshold ------
      0.033   14.4  10.9       0.52   10.7   0.0    4.6  5  TPR_8           Tetratricopeptide repeat
      0.041   14.7   0.5      0.041   14.7   0.5    7.2  7  TPR_14          Tetratricopeptide repeat
        3.3    7.9   6.4        7.2    6.8   0.1    3.0  3  Fis1_TPR_C      Fis1 C-terminal tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> TPR_1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.8   1.0    0.0035       6.2       2      28 ..     407     433 ..     406     435 .. 0.91
   2 !   15.6   0.1     6e-06     0.011       1      33 [.     464     496 ..     464     497 .. 0.96
   3 !   13.0   0.0     4e-05     0.071       2      34 .]     499     531 ..     498     531 .. 0.95

  Alignments for each domain:
  == domain 1  score: 6.8 bits;  conditional E-value: 0.0035
                 HHHHHHHHHHHHTT-HHHHHHHHHHHH CS
       TPR_1   2 kalynlGnayfklgkydeAleyyekAL 28 
                 + l+ lGn  f  g++  A ++ye+A+
  KOO22517.1 407 NELKALGNENFTAGDLAAATAAYEQAV 433
                 66889*********************7 PP

  == domain 2  score: 15.6 bits;  conditional E-value: 6e-06
                 HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT CS
       TPR_1   1 akalynlGnayfklgkydeAleyyekALelnPn 33 
                 a +++nl++++ k ++++ Al + + A+ l+P+
  KOO22517.1 464 AACHNNLAACHVKAQQWESALRAASAAVDLDPS 496
                 679*****************************7 PP

  == domain 3  score: 13.0 bits;  conditional E-value: 4e-05
                 HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH CS
       TPR_1   2 kalynlGnayfklgkydeAleyyekALelnPnn 34 
                 ka  ++G+a+ + g++ eA ++   +++ +P+n
  KOO22517.1 499 KARLRRGVACSHVGRLAEAKADLTAVIKADPKN 531
                 7899***************************98 PP

>> TPR_9  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.1       2.8     5e+03      12      37 ..     130     155 ..     128     161 .. 0.84
   2 ?    0.6   0.2      0.35   6.2e+02      41      68 ..     418     445 ..     405     447 .. 0.76
   3 !   31.7   4.2     7e-11   1.3e-07       1      71 [.     470     540 ..     470     542 .. 0.95
   4 ?   -2.4   3.5       3.1   5.6e+03      29      68 ..     590     628 ..     571     633 .. 0.78

  Alignments for each domain:
  == domain 1  score: -2.3 bits;  conditional E-value: 2.8
       TPR_9  12 eralavverllllaPddpeerrdRGl 37 
                 + ala+++r  +  + + + +r RG+
  KOO22517.1 130 APALAAADRSTVTLSGEGQPHRRRGM 155
                 5699*****99999988888888885 PP

  == domain 2  score: 0.6 bits;  conditional E-value: 0.35
       TPR_9  41 qlGclsaAladLeaylalapdapdaeai 68 
                   G+l+aA a+ e+++a+  ++++  a+
  KOO22517.1 418 TAGDLAAATAAYEQAVAKLTSDAAKTAL 445
                 5799999999999999887766665555 PP

  == domain 3  score: 31.7 bits;  conditional E-value: 7e-11
       TPR_9   1 lkaiaireedweralavverllllaPddpeerrdRGlllaqlGclsaAladLeaylalapdapdaeairaq 71 
                 l a++  +++we al+++   + l+P  +  r+ RG++  ++G+l++A adL a +  +p++++a+a+ ++
  KOO22517.1 470 LAACHVKAQQWESALRAASAAVDLDPSLVKARLRRGVACSHVGRLAEAKADLTAVIKADPKNREARAALEL 540
                 56899*******************************************************99999998776 PP

  == domain 4  score: -2.4 bits;  conditional E-value: 3.1
       TPR_9  29 peerrdRGlllaqlGclsaAladLeaylalapdapdaeai 68 
                  +e+r    +l q+G ++ A++ L  ++a   da++++a+
  KOO22517.1 590 LHEWRQECDALRQRGPPNPAIDLLASAAASG-DAEARAAL 628
                 6899999999**********99888887665.55555544 PP

>> TPR_16  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.2   0.1        10   1.8e+04      48      59 ..     127     138 ..     125     139 .. 0.71
   2 ?   -2.8   0.9       5.8     1e+04      25      50 ..     212     237 ..     206     239 .. 0.67
   3 ?    5.6   1.3     0.014        25       2      28 ..     411     437 ..     410     448 .. 0.81
   4 !   31.4   2.1   1.3e-10   2.3e-07       7      67 ..     474     531 ..     468     532 .. 0.92
   5 ?    1.6   2.8      0.25   4.4e+02      15      46 ..     516     544 ..     515     587 .. 0.82
   6 ?   -3.0   0.8         7   1.3e+04      17      31 ..     610     621 ..     598     631 .. 0.49

  Alignments for each domain:
  == domain 1  score: -4.2 bits;  conditional E-value: 10
      TPR_16  48 grlaeAaalyra 59 
                 g la+A+a+ ++
  KOO22517.1 127 GLLAPALAAADR 138
                 788888866655 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 5.8
      TPR_16  25 krdpssPdaaeAllllgdaalrqgrl 50 
                 +++p  P  a+++  +gd a + + +
  KOO22517.1 212 AAAPLGPSYAAMHVRRGDKAVVDKAY 237
                 34555689999999999866665555 PP

  == domain 3  score: 5.6 bits;  conditional E-value: 0.014
      TPR_16   2 alaraalragdyddAaaaleaalkrdp 28 
                 al+++ + agd ++A aa+e+a+++  
  KOO22517.1 411 ALGNENFTAGDLAAATAAYEQAVAKLT 437
                 67888899***********99998764 PP

  == domain 4  score: 31.4 bits;  conditional E-value: 1.3e-10
      TPR_16   7 alragdyddAaaaleaalkrdpssPdaaeAllllgdaalrqgrlaeAaalyraalraapda 67 
                 +++a++++ A++a+ aa+++d   P  + A+l +g+a+ + grlaeA a + a ++a+p++
  KOO22517.1 474 HVKAQQWESALRAASAAVDLD---PSLVKARLRRGVACSHVGRLAEAKADLTAVIKADPKN 531
                 6899*****************...***********************99888888999975 PP

  == domain 5  score: 1.6 bits;  conditional E-value: 0.25
      TPR_16  15 dAaaaleaalkrdpssPdaaeAllllgdaalr 46 
                 +A a l+a++k+d   P ++eA+ +l +++++
  KOO22517.1 516 EAKADLTAVIKAD---PKNREARAALELVLAK 544
                 89999********...6666666555555555 PP

  == domain 6  score: -3.0 bits;  conditional E-value: 7
      TPR_16  17 aaaleaalkrdpssP 31 
                 + +l  a +++    
  KOO22517.1 610 IDLLASAAASG---D 621
                 44444444444...2 PP

>> TPR_2  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.8   0.7    0.0022       3.9       3      29 ..     408     434 ..     406     437 .. 0.90
   2 !   17.5   0.2   1.8e-06    0.0032       1      33 [.     464     496 ..     464     497 .. 0.95
   3 !   12.6   0.0   6.2e-05      0.11       3      34 .]     500     531 ..     498     531 .. 0.93
   4 ?   -4.9   2.1        10   1.8e+04      19      31 ..     571     583 ..     566     585 .. 0.76

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 0.0022
       TPR_2   3 alynlGlayyklgdyeeAleafekAle 29 
                  l +lG+  + +gd++ A +a+e+A++
  KOO22517.1 408 ELKALGNENFTAGDLAAATAAYEQAVA 434
                 6789*********************86 PP

  == domain 2  score: 17.5 bits;  conditional E-value: 1.8e-06
       TPR_2   1 aealynlGlayyklgdyeeAleafekAleldPn 33 
                 a +++nl+ ++ k++++e Al+a  +A+ ldP 
  KOO22517.1 464 AACHNNLAACHVKAQQWESALRAASAAVDLDPS 496
                 678*****************************6 PP

  == domain 3  score: 12.6 bits;  conditional E-value: 6.2e-05
       TPR_2   3 alynlGlayyklgdyeeAleafekAleldPnn 34 
                 a  ++G a+ + g+++eA++++ ++++ dP+n
  KOO22517.1 500 ARLRRGVACSHVGRLAEAKADLTAVIKADPKN 531
                 5679**************************97 PP

  == domain 4  score: -4.9 bits;  conditional E-value: 10
       TPR_2  19 eAleafekAleld 31 
                 eA+e   kA +l+
  KOO22517.1 571 EAREKAAKAQALA 583
                 7888888887776 PP

>> Aha1_N  Activator of Hsp90 ATPase, N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.8   0.0   6.7e-10   1.2e-06       1     133 [.     787     928 ..     787     930 .. 0.79

  Alignments for each domain:
  == domain 1  score: 28.8 bits;  conditional E-value: 6.7e-10
      Aha1_N   1 eKdatpWskerlkelllslkleneeaksvkitevksveGdasvnqrKgKvifiydlklklewegtvk.......kedgkkvkGeieipelssenddd.. 90 
                 e+d++ W+ +  + +l++l+l+n     +++++v  +eG as+  ++g+v   ++lk ++ew   ++       +   + ++G++   e+  +   +  
  KOO22517.1 787 ERDVSAWALADVQRRLEGLSLAN-----ISVSNVAALEGHASIISMRGRVKRPFELKCEIEWRWGAQddagaggEVPTTAARGKLLYSEICPTGPSKsg 880
                 8****************877776.....9999******************************9998766655554445589999999999998444436 PP

      Aha1_N  91 ..dyeievsvkk.....deekkekqklkelikskgvpklreklakfvkeL 133
                        v+ +        +++++  ++++   ++++ ++++l +fv+eL
  KOO22517.1 881 lpA--AAVTYELgeqrtVAPSSAARPAVQAELAHLKQRVESALGDFVAEL 928
                 442..333333354666446777788888888999999999999999998 PP

>> TPR_19  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.2   0.1     0.036        64       4      20 ..     419     435 ..     416     466 .. 0.82
   2 !   18.7   2.2   1.1e-06    0.0019       3      65 ..     476     538 ..     474     545 .. 0.90
   3 ?   -4.3   5.0        10   1.8e+04      32      61 ..     597     626 ..     565     635 .. 0.56

  Alignments for each domain:
  == domain 1  score: 4.2 bits;  conditional E-value: 0.036
      TPR_19   4 egdyaeAlalleqalqe 20 
                 +gd+a+A a++eqa ++
  KOO22517.1 419 AGDLAAATAAYEQAVAK 435
                 8************9876 PP

  == domain 2  score: 18.7 bits;  conditional E-value: 1.1e-06
      TPR_19   3 aegdyaeAlalleqalqedpknaearllLAeallalgqldeAealLdalpeedpddaryasLl 65 
                 ++++ ++Al++ ++a + dp    arl+   a+   g+l+eA+a L a+ ++dp++ +++++l
  KOO22517.1 476 KAQQWESALRAASAAVDLDPSLVKARLRRGVACSHVGRLAEAKADLTAVIKADPKNREARAAL 538
                 7899***************************************************87777654 PP

  == domain 3  score: -4.3 bits;  conditional E-value: 10
      TPR_19  32 AeallalgqldeAealLdalpeedpddary 61 
                 ++al + g ++ A++lL+ + ++   +ar+
  KOO22517.1 597 CDALRQRGPPNPAIDLLASAAASGDAEARA 626
                 667777777777777776666555443333 PP

>> TPR_11  TPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.1   0.5      0.01        19       1      22 [.     413     434 ..     413     441 .. 0.88
   2 !    7.8   0.0    0.0014       2.6       6      37 ..     476     507 ..     474     508 .. 0.92
   3 ?    2.4   0.1     0.073   1.3e+02       8      40 ..     512     544 ..     511     546 .. 0.87

  Alignments for each domain:
  == domain 1  score: 5.1 bits;  conditional E-value: 0.01
      TPR_11   1 GdayyeqGkyeeAieaYkkAlk 22 
                 G++ +  G++ +A +aY++A++
  KOO22517.1 413 GNENFTAGDLAAATAAYEQAVA 434
                 7888899*************86 PP

  == domain 2  score: 7.8 bits;  conditional E-value: 0.0014
      TPR_11   6 eqGkyeeAieaYkkAlkldPdnaeayynLGla 37 
                 + +++e A+ a ++A++ldP+ + a + +G+a
  KOO22517.1 476 KAQQWESALRAASAAVDLDPSLVKARLRRGVA 507
                 56899************************987 PP

  == domain 3  score: 2.4 bits;  conditional E-value: 0.073
      TPR_11   8 GkyeeAieaYkkAlkldPdnaeayynLGlayyk 40 
                 G++ eA +++ + +k dP+n ea  +L l+++k
  KOO22517.1 512 GRLAEAKADLTAVIKADPKNREARAALELVLAK 544
                 8999****************9999888666665 PP

>> TPR_8  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.5   0.1     0.027        48       7      28 ..     412     433 ..     411     434 .. 0.89
   2 ?   -1.5   0.0       2.2     4e+03       4      32 ..     467     495 ..     464     496 .. 0.84
   3 ?   10.7   0.0   0.00029      0.52       2      34 .]     499     531 ..     498     531 .. 0.92
   4 ?    2.8   1.0     0.093   1.7e+02       6      30 ..     555     579 ..     553     581 .. 0.90
   5 ?   -2.5   0.2       4.7   8.5e+03      19      31 ..     662     674 ..     660     676 .. 0.75

  Alignments for each domain:
  == domain 1  score: 4.5 bits;  conditional E-value: 0.027
                 HHHHHHHTT-HHHHHHHHHHHH CS
       TPR_8   7 lgsiylklgdyeeAkeyyekal 28 
                 lg+  ++ gd+ +A ++ye+a+
  KOO22517.1 412 LGNENFTAGDLAAATAAYEQAV 433
                 78888899************97 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 2.2
                 HHHHHHHHHHTT-HHHHHHHHHHHHHHHH CS
       TPR_8   4 yynlgsiylklgdyeeAkeyyekaleldp 32 
                 ++nl+ ++ k ++ e+A  +   a++ldp
  KOO22517.1 467 HNNLAACHVKAQQWESALRAASAAVDLDP 495
                 67888888888898999999999999999 PP

  == domain 3  score: 10.7 bits;  conditional E-value: 0.00029
                 CHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH. CS
       TPR_8   2 eayynlgsiylklgdyeeAkeyyekaleldpdn 34 
                 +a ++ g +++  g++ eAk+ +  ++++dp+n
  KOO22517.1 499 KARLRRGVACSHVGRLAEAKADLTAVIKADPKN 531
                 6778899999*********************97 PP

  == domain 4  score: 2.8 bits;  conditional E-value: 0.093
                 HHHHHHHHTT-HHHHHHHHHHHHHH CS
       TPR_8   6 nlgsiylklgdyeeAkeyyekalel 30 
                 ++g++ + l + e+A+e+ eka ++
  KOO22517.1 555 MMGKAFEGLAKEEAAIEAREKAAKA 579
                 7899*****************9886 PP

  == domain 5  score: -2.5 bits;  conditional E-value: 4.7
                 HHHHHHHHHHHHH CS
       TPR_8  19 eAkeyyekaleld 31 
                 +A e ++ka e++
  KOO22517.1 662 KADEDLRKAEEAR 674
                 7889999997765 PP

>> TPR_14  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.9   0.9    0.0036       6.5       3      35 ..     408     440 ..     406     450 .. 0.82
   2 ?    9.0   1.0    0.0016       2.8       7      42 ..     470     505 ..     464     507 .. 0.90
   3 ?   14.7   0.5   2.3e-05     0.041       2      41 ..     499     538 ..     498     545 .. 0.91
   4 ?   -1.3   0.9       3.2   5.7e+03       5      31 ..     554     580 ..     551     593 .. 0.59
   5 ?    1.1   0.8      0.53   9.6e+02       7      40 ..     596     627 ..     590     632 .. 0.72
   6 ?   -2.9   0.7        10   1.8e+04      13      30 ..     672     689 ..     667     702 .. 0.62
   7 ?    0.6   0.0      0.78   1.4e+03      10      33 ..     719     741 ..     717     748 .. 0.84

  Alignments for each domain:
  == domain 1  score: 7.9 bits;  conditional E-value: 0.0036
      TPR_14   3 allalaeallalGdpdeAiallrralalaPdda 35 
                  l+al+   +++Gd+++A a++++a+a+  +da
  KOO22517.1 408 ELKALGNENFTAGDLAAATAAYEQAVAKLTSDA 440
                 5788999999*****************877765 PP

  == domain 2  score: 9.0 bits;  conditional E-value: 0.0016
      TPR_14   7 laeallalGdpdeAiallrralalaPddaeawllla 42 
                 la+ +  +++++ A++++ +a++l+P+   a+l+ +
  KOO22517.1 470 LAACHVKAQQWESALRAASAAVDLDPSLVKARLRRG 505
                 67778999********************99999876 PP

  == domain 3  score: 14.7 bits;  conditional E-value: 2.3e-05
      TPR_14   2 eallalaeallalGdpdeAiallrralalaPddaeawlll 41 
                 +a+l+++ a+ + G+++eA a l ++++++P+++ea+ +l
  KOO22517.1 499 KARLRRGVACSHVGRLAEAKADLTAVIKADPKNREARAAL 538
                 799*******************************999655 PP

  == domain 4  score: -1.3 bits;  conditional E-value: 3.2
      TPR_14   5 lalaeallalGdpdeAiallrralala 31 
                 +++++a++ l + ++Ai++ ++a +++
  KOO22517.1 554 AMMGKAFEGLAKEEAAIEAREKAAKAQ 580
                 677788877777777777766665432 PP

  == domain 5  score: 1.1 bits;  conditional E-value: 0.53
      TPR_14   7 laeallalGdpdeAiallrralalaPddaeawll 40 
                   +al+++G p  Ai+ll  a a   +daea+ +
  KOO22517.1 596 ECDALRQRGPPNPAIDLLASAAAS--GDAEARAA 627
                 557899999999********9664..34444443 PP

  == domain 6  score: -2.9 bits;  conditional E-value: 10
      TPR_14  13 alGdpdeAiallrralal 30 
                 ++++ +eA+++ + a+ +
  KOO22517.1 672 EARQQEEARRASQSAVTK 689
                 567778888887777553 PP

  == domain 7  score: 0.6 bits;  conditional E-value: 0.78
      TPR_14  10 allalGdpdeAiallrralalaPd 33 
                 ++++ ++ d+A ++l +a ++aP+
  KOO22517.1 719 YFARTDQVDTATKALLDA-QKAPK 741
                 678999***********9.66775 PP

>> Fis1_TPR_C  Fis1 C-terminal tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.6   0.0     0.039        69       3      33 ..     466     496 ..     465     501 .. 0.89
   2 ?    6.8   0.1     0.004       7.2       9      44 ..     506     541 ..     504     549 .. 0.85
   3 ?   -3.3   1.5       5.6     1e+04      19      50 ..     658     689 ..     657     691 .. 0.85

  Alignments for each domain:
  == domain 1  score: 3.6 bits;  conditional E-value: 0.039
                 HHHHHHHHHHHHT-HHHHHHHHHHHHHHTTS CS
  Fis1_TPR_C   3 clYylAlGhyklgeYseArryvdalLeiEPe 33 
                 c+  lA  h k ++ + A+r + a   ++P+
  KOO22517.1 466 CHNNLAACHVKAQQWESALRAASAAVDLDPS 496
                 5557999******************999996 PP

  == domain 2  score: 6.8 bits;  conditional E-value: 0.004
                 HHHHHHT-HHHHHHHHHHHHHHTTS-HHHHHHHHHH CS
  Fis1_TPR_C   9 lGhyklgeYseArryvdalLeiEPenrQaqsLkeli 44 
                 +++  +g+  eA+  + a+++ +P+nr a++  el+
  KOO22517.1 506 VACSHVGRLAEAKADLTAVIKADPKNREARAALELV 541
                 899999***********************9755555 PP

  == domain 3  score: -3.3 bits;  conditional E-value: 5.6
                 HHHHHHHHHHHHTTS-HHHHHHHHHHHHHHHH CS
  Fis1_TPR_C  19 eArryvdalLeiEPenrQaqsLkeliedkikk 50 
                 eA+r +d  L++  e rQ ++ +++ +++++k
  KOO22517.1 658 EAKRKADEDLRKAEEARQQEEARRASQSAVTK 689
                 79999999999999999999888888888776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (931 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1475  (0.0822689); expected 358.6 (0.02)
Passed bias filter:                      625  (0.0348597); expected 358.6 (0.02)
Passed Vit filter:                        83  (0.00462937); expected 17.9 (0.001)
Passed Fwd filter:                        15  (0.000836633); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.82u 0.32s 00:00:01.13 Elapsed: 00:00:00.47
# Mc/sec: 5979.10
//
Query:       KOO22518.1  [L=444]
Description: cyclic nucleotide-binding protein, partial [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    4.6e-16   58.8   1.1      7e-16   58.2   1.1    1.1  1  Ion_trans    Ion transport protein
    3.7e-06   26.8   4.6    3.7e-06   26.8   4.6    2.4  3  Ion_trans_2  Ion channel


Domain annotation for each model (and alignments):
>> Ion_trans  Ion transport protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.2   1.1   7.9e-20     7e-16      59     234 ..      18     219 ..      12     224 .. 0.71

  Alignments for each domain:
  == domain 1  score: 58.2 bits;  conditional E-value: 7.9e-20
                 H.HHHHHHCHSHHHHHHHHHHHHHHHHH...HHHH.........HHHHHHHHHHHHGGGGGGHHHCHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
   Ion_trans  59 l.likkrYlrdpwnilDflvvlpsllsl...vlse.........esllllsvlrlfrvlrllklisrleglrtlvtalirsvkdllnvlllllvvlfif 144
                   +i++rY+ ++w+i+D+l++ +sl+++   +  +          ++ +l++++l+r++ + ++++r+e    + + ++ +   ll ++++++++++++
  KOO22518.1  18 RrKIAWRYVASFWFIVDVLSIGVSLFDIlapT--SgplasakgfRAIRALRLIKLARLVNVSRIFKRWELKASINYGVLSISMILLGLIYACHLFACVW 114
                 44789**********************96550..25565563445555555555566666666666666655566677777777778999999999999 PP

                 HHHHHHHHTTSCCCCCC..............SCCSTSSSTTTSSSSSS...HHHHHHHHHHHHTTSSHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHH CS
   Ion_trans 145 aligvqlfkgklrekne..............caktwenpnngntnFdn...fftallwlfrlmttegwgdilyatldekskvaliyfvifiilgsflll 226
                 +l ++    +++                   c ++++ ++ng++  +    ++ +l+w++++ t+ g+gd+ +  l++ +++ ++  + +  ++  +++
  KOO22518.1 115 GLQAYFDPLNSWLG--PqqqgycvewdpttpCPDGQRCNENGYSCLQAdvlYIRSLYWAVTTVTSTGYGDVAASKLNATENLVCAAILYIGAVCFAYIV 211
                 98885555445543..13345555566666688888888888887777999****************************66666665555566666666 PP

                 HHHHHHHH CS
   Ion_trans 227 Nlliavia 234
                   ++++++
  KOO22518.1 212 GSFFGIVV 219
                 66666655 PP

>> Ion_trans_2  Ion channel
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.1      0.22     2e+03      23      37 ..      23      36 ..      15      44 .. 0.70
   2 ?   -2.6   0.5      0.62   5.6e+03      53      69 ..      93     109 ..      89     115 .. 0.70
   3 !   26.8   4.6   4.1e-10   3.7e-06      25      76 ..     164     217 ..     154     220 .. 0.85

  Alignments for each domain:
  == domain 1  score: -1.2 bits;  conditional E-value: 0.22
                 --HHHHHHHHHHHHT CS
  Ion_trans_2 23 wsfldalYfsfvtlt 37
                 w ++ +++f +  ++
   KOO22518.1 23 WRYVASFWFIV-DVL 36
                 68888888854.333 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 0.62
                  HHHHHHHHHHHHHHHHH CS
  Ion_trans_2  53 lftivyillGlalfalf 69 
                  +++i  illGl++   +
   KOO22518.1  93 VLSISMILLGLIYACHL 109
                  56778888888776555 PP

  == domain 3  score: 26.8 bits;  conditional E-value: 4.1e-10
                  HHHHHHHHHHHHTTS----SSTT..-----HHHHHHHHHHHHHHHHHHHHHHHH CS
  Ion_trans_2  25 fldalYfsfvtltTiGYGdivpe..tdagrlftivyillGlalfalflavlgkv 76 
                  ++ +lY++++t+t+ GYGd+++   +++  l++ +++ +G ++fa+++  ++ +
   KOO22518.1 164 YIRSLYWAVTTVTSTGYGDVAASklNATENLVCAAILYIGAVCFAYIVGSFFGI 217
                  7889****************88765666899****************9988765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (444 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       465  (0.0259356); expected 358.6 (0.02)
Passed bias filter:                      336  (0.0187406); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.50u 0.27s 00:00:00.77 Elapsed: 00:00:00.43
# Mc/sec: 3078.80
//
Query:       KOO22519.1  [L=106]
Description: hypothetical protein Ctob_000745 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (106 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       202  (0.0112667); expected 358.6 (0.02)
Passed bias filter:                      171  (0.00953762); expected 358.6 (0.02)
Passed Vit filter:                         9  (0.00050198); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.23s 00:00:00.59 Elapsed: 00:00:00.39
# Mc/sec: 823.48
//
Query:       KOO22520.1  [L=88]
Description: tubulin polyglutamylase ttll6-like protein, partial [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.7e-07   30.0   0.0    3.1e-07   29.8   0.0    1.0  1  TTL       Tubulin-tyrosine ligase family


Domain annotation for each model (and alignments):
>> TTL  Tubulin-tyrosine ligase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.8   0.0   1.7e-11   3.1e-07       8      64 ..      21      77 ..      13      86 .. 0.90

  Alignments for each domain:
  == domain 1  score: 29.8 bits;  conditional E-value: 1.7e-11
                -SS-SSS--EEEE--------------------..-------TTHHHHHHHTTTS-- CS
         TTL  8 dqllnhfpnsseitrkdllvknlkrtkkklekklkflprtfvlpadlaefveeaeke 64
                +q++nhfp++ e+ rk+  ++nl+++    +k++kf+p+t+++pad+++++ e++  
  KOO22520.1 21 MQKINHFPGMLELVRKAGTARNLNKMLLACGKPYKFFPTTYIMPADYPALKLEWRLT 77
                9***********************************************999888755 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (88 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       203  (0.0113224); expected 358.6 (0.02)
Passed bias filter:                      184  (0.0102627); expected 358.6 (0.02)
Passed Vit filter:                         9  (0.00050198); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.32u 0.23s 00:00:00.55 Elapsed: 00:00:00.36
# Mc/sec: 727.21
//
Query:       KOO22521.1  [L=418]
Description: upf0586 protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.5e-53  180.2   0.0      6e-53  179.8   0.0    1.1  1  N2227            N2227-like protein
     0.0066   15.7   0.0     0.0099   15.1   0.0    1.2  1  NNMT_PNMT_TEMT   NNMT/PNMT/TEMT family
  ------ inclusion threshold ------
      0.024   15.3   0.1       0.23   12.1   0.0    2.4  2  Methyltransf_11  Methyltransferase domain
      0.075   13.7   0.8       0.32   11.7   0.1    2.4  2  Methyltransf_25  Methyltransferase domain


Domain annotation for each model (and alignments):
>> N2227  N2227-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  179.8   0.0   1.3e-56     6e-53      15     270 ..      88     356 ..      81     358 .. 0.92

  Alignments for each domain:
  == domain 1  score: 179.8 bits;  conditional E-value: 1.3e-56
                 HHHHHHHHHHHH-STTHHHHHHHHHHHHHHHHHHS-T......T-EEEEET-TT-HHHHHHHHTT-EEEEEE--HHHHHHHHHHHHS---.TT-EEE-T CS
       N2227  15 vrstlrqivRdwsaegkeERealykpiieelkelvpseskerekvkilvPGaGlGrlavelatkgyqvegnEfsyfmllasefiLnavke.enqitiyp 112
                 v  +l+q+vR+w  +g++ERe+++ +++++l+++vp   +  +++++++PGaGlGrl++e+a+ gy++ g+E ++ m+l+ ++++n+  + e    i+p
  KOO22521.1  88 VDGMLKQLVREWTDAGAAEREQCLGFVLSSLERHVP--ISGGSPPQVVIPGAGLGRLVWEVAMRGYAAVGIERAMSMMLCGSYVINHLLShERTGRIQP 184
                 55689*******************************..688899******************************************9765156679*** PP

                 TTT--S...S-SSGGGGG--EEE-SS------TT..............S--EEEEES-HHHHH--SSHTT-EEEEEEES-TTSSS-HHHHHHHHHHHEE CS
       N2227 113 fvhsfs...nqlsrddqlrkvkipDveplselkr..............kknlsmaagdflevykeeeaaesydvvvtcfFiDtaeNvleYletiekvlk 194
                 ++   s   n  s+ +  r++ +pD++++++                 ++ l++ +gdf+ v   +      d+v+t f +D+   v+  let+++ lk
  KOO22521.1 185 YAAVGSgpcNVESAANVGREFCVPDADAAKRFASataeadataglqhpHERLQVITGDFRAVARAS--GPCADAVLTTFLVDACGDVVGALETVHAQLK 281
                 *98765222667778888***********998888999*********99**************999..8999*************************** PP

                 EEEEEEEEE----TTTTTTSEEEEE----HHHHHHHHHHS-EEEEEEEEEEEE-SS-STT--S---EEEEEEEEEE CS
       N2227 195 pgglwiNlGPLlYhfedltvadevsielsleeilalakkvgfkvlkeekeiesgYltnkesmlqlkYklvffvlrk 270
                 pgg+wiNlGPL Y       + + ++ l  +e+++l++++gf++l+ +k++++ Y++++ smlq++++++f v+rk
  KOO22521.1 282 PGGVWINLGPLEYEGTAG-YHASRKLRLCADELVQLVRQRGFEILETRKGVRCDYTQDQFSMLQSHFNCLFIVARK 356
                 *************76655.578889***********************************************9998 PP

>> NNMT_PNMT_TEMT  NNMT/PNMT/TEMT family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.0   2.2e-06    0.0099     158     256 .]     253     356 ..     238     356 .. 0.78

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 2.2e-06
                     .EEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEEEEEEEEEECS-SEEEETTEEEE---B-HHHHHHHHHHTTEEEEEEE..........G-TT CS
  NNMT_PNMT_TEMT 158 kadvvvtifcleaacedleeylralrnlasllkpGGhlvlggvleeseynvGekkfsllalekeevlealkkaglkveelk..........ksak 242
                      ad+v+t+f ++a+       + al+ +   lkpGG+ + +g le +  ++G +  + l+l  +e+ + + + g+++ e++          + ++
      KOO22521.1 253 CADAVLTTFLVDACGDV----VGALETVHAQLKPGGVWINLGPLEYE-GTAGYHASRKLRLCADELVQLVRQRGFEILETRkgvrcdytqdQFSM 342
                     48********9976644....679********************976.5799999***********************99955555444322333 PP

                     TB--SEEEEEEEEE CS
  NNMT_PNMT_TEMT 243 vldnegvffvvakK 256
                     + ++ + +f+va+K
      KOO22521.1 343 LQSHFNCLFIVARK 356
                     44455556666665 PP

>> Methyltransf_11  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.3   0.0      0.39   1.8e+03       4      31 ..     136     163 ..     134     179 .. 0.87
   2 ?   12.1   0.0   5.1e-05      0.23      40      93 ..     226     285 ..     187     287 .. 0.75

  Alignments for each domain:
  == domain 1  score: -0.3 bits;  conditional E-value: 0.39
                      T-TTSHHHHHHHHTTSEEEEEES-HHHH CS
  Methyltransf_11   4 GcGtGrlaealakrgarvvgvDlskeml 31 
                      G+G Grl+ ++a rg+  vg++ +  m+
       KOO22521.1 136 GAGLGRLVWEVAMRGYAAVGIERAMSMM 163
                      9999****99999999999999988776 PP

  == domain 2  score: 12.1 bits;  conditional E-value: 5.1e-05
                      HHT-.....EEEETTEECCCTSS-TT.-EEEEEEES-CCC-CCHHHHHHHHHHHEEEEEE CS
  Methyltransf_11  40 eegl.....kvefvvadaeklpfedn.sfDlvvssevlhhvedpekalkeiaRvLkpgGl 93 
                      ++gl     +++++ +d++ +  +++   D+v+ ++ ++ + d+  al+ ++  LkpgG+
       KOO22521.1 226 TAGLqhpheRLQVITGDFRAVARASGpCADAVLTTFLVDACGDVVGALETVHAQLKPGGV 285
                      2222333457999******996555449*******************************7 PP

>> Methyltransf_25  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.1      0.84   3.7e+03       5      33 ..     136     162 ..     132     167 .. 0.84
   2 ?   11.7   0.1   7.1e-05      0.32      27      97 .]     210     284 ..     186     284 .. 0.68

  Alignments for each domain:
  == domain 1  score: -1.3 bits;  conditional E-value: 0.84
                      T-TTSHHHHHHHCTSTSSEEEEEESSHHH CS
  Methyltransf_25   5 GcGtGrltlalakrlgkakvtgvDiseem 33 
                      G+G Grl+ ++a r+  +  +g++ + +m
       KOO22521.1 136 GAGLGRLVWEVAMRG--YAAVGIERAMSM 162
                      8999********995..999999887777 PP

  == domain 2  score: 11.7 bits;  conditional E-value: 7.1e-05
                      EESSHHHHHHHHHHHHHTTT.....TEEEEESBCCGBSSSTT.TEEEEEEESTGGGSSHHHHHHHHHHHHHHEEEEE CS
  Methyltransf_25  27 vDiseemleaareraeeegl.....nvefvqgdaedlpfedg.sfDlvvssgalhhlsdedlekalkeiarvLkpgG 97 
                       D ++++  a++e  + +gl     ++++++gd++++  ++g   D+v+ ++ +  +   d+  al+ ++  LkpgG
       KOO22521.1 210 ADAAKRFASATAEADATAGLqhpheRLQVITGDFRAVARASGpCADAVLTTFLVDACG--DVVGALETVHAQLKPGG 284
                      4444444444333333333344488***********998777599*****98888876..899*************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (418 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       442  (0.0246528); expected 358.6 (0.02)
Passed bias filter:                      377  (0.0210274); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.52u 0.26s 00:00:00.78 Elapsed: 00:00:00.45
# Mc/sec: 2774.73
//
Query:       KOO22522.1  [L=340]
Description: protein arginine n-methyltransferase -like protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.1e-05   26.1   0.1    2.7e-05   24.8   0.1    1.7  1  Methyltransf_25  Methyltransferase domain
    0.00012   21.6   0.0    0.00019   20.9   0.0    1.3  1  PrmA             Ribosomal protein L11 methyltransferase (Prm
     0.0012   18.8   0.0     0.0019   18.2   0.0    1.2  1  Methyltransf_32  Methyltransferase domain
     0.0018   19.0   0.0     0.0033   18.1   0.0    1.5  1  Methyltransf_12  Methyltransferase domain
     0.0023   17.8   0.0     0.0038   17.0   0.0    1.4  1  Methyltransf_31  Methyltransferase domain
      0.003   17.1   0.0     0.0053   16.3   0.0    1.4  1  MTS              Methyltransferase small domain
     0.0065   15.8   0.0     0.0098   15.2   0.0    1.2  1  CMAS             Mycolic acid cyclopropane synthetase
     0.0095   16.9   0.5      0.053   14.6   0.0    2.4  2  Methyltransf_24  Methyltransferase domain
  ------ inclusion threshold ------
      0.019   15.6   0.2      0.056   14.1   0.1    2.0  1  Methyltransf_11  Methyltransferase domain
       0.02   14.7   0.0      0.041   13.6   0.0    1.5  2  Methyltransf_16  Lysine methyltransferase
       0.18   11.6   0.0        0.3   10.9   0.0    1.4  1  Methyltransf_23  Methyltransferase domain


Domain annotation for each model (and alignments):
>> Methyltransf_25  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.8   0.1   1.7e-08   2.7e-05       1      97 []     110     210 ..     110     210 .. 0.81

  Alignments for each domain:
  == domain 1  score: 24.8 bits;  conditional E-value: 1.7e-08
                      EEEET-TTSHHHHHHHCTSTSSEEEEEESSHHHHHHHHHHHHHTTT..TEEEEESBCCGBS...SSTTTEEEEEEEST.GGGSSHHHHHHHHHH CS
  Methyltransf_25   1 vLdlGcGtGrltlalakrlgkakvtgvDiseemleaareraeeegl..nvefvqgdaedlp...fedgsfDlvvssga.lhhlsdedlekalke 88 
                      vLd+G+G G l + +a+++  a v+g++++ +  + +++ +e++gl  +++++    ++l    ++ ++fDl+v      ++l +e +  +l++
       KOO22522.1 110 VLDIGTGFGLLGMVAARAG--ALVVGCEMNTAVAAVCERVVERNGLaaRMQVLPRRSDELTphvLDGRRFDLIVTETLdSELL-REGIVPTLRH 200
                      9***********9999995..***********************998888888888888764545888*******65545555.5778888888 PP

                      HHHH.EEEEE CS
  Methyltransf_25  89 iarv.LkpgG 97 
                      +  v L pgG
       KOO22522.1 201 AQAVlLAPGG 210
                      8876146666 PP

>> PrmA  Ribosomal protein L11 methyltransferase (PrmA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.9   0.0   1.2e-07   0.00019     164     237 ..     109     187 ..      92     213 .. 0.78

  Alignments for each domain:
  == domain 1  score: 20.9 bits;  conditional E-value: 1.2e-07
        PrmA 164 evlDvGtGSGiLaiaaakLgakkvvavDiDevAvkvakeNaelNkveaklev......alseellkeekadvivaNILae 237
                  vlD+GtG G+L ++aa+ ga  vv+  ++     v ++ +e+N+++a+++v       l+ ++l+ +++d+iv   L +
  KOO22522.1 109 LVLDIGTGFGLLGMVAARAGA-LVVGCEMNTAVAAVCERVVERNGLAARMQVlprrsdELTPHVLDGRRFDLIVTETLDS 187
                 69*****************98.699****99999999**************943222112333335899****9987754 PP

>> Methyltransf_32  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.2   0.0   1.1e-06    0.0019       9      94 ..      89     169 ..      87     207 .. 0.84

  Alignments for each domain:
  == domain 1  score: 18.2 bits;  conditional E-value: 1.1e-06
  Methyltransf_32   9 laelvakllkel.akesgaltvvDvGaGkgYLsfvlalkekeyklkvvgidakeelvekaekraeklgkkfnkrlsfaelsieeats 94 
                      +a+ +++++++  a++ ++  v+D+G G g L+ v a      +  vvg ++++++++ +e++ e+ g  +++r++     ++e t 
       KOO22522.1  89 YAAAIEEAVRTHlARHGAPPLVLDIGTGFGLLGMVAAR----AGALVVGCEMNTAVAAVCERVVERNG--LAARMQVLPRRSDELTP 169
                      57778888887756777888999*************99....6999**********************..88999988777666655 PP

>> Methyltransf_12  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.1   0.0     2e-06    0.0033       1      99 []     111     212 ..     111     212 .. 0.86

  Alignments for each domain:
  == domain 1  score: 18.1 bits;  conditional E-value: 2e-06
  Methyltransf_12   1 LeiGcGtGsllralleklpdieytgvDispsaiedakeklakrennnnnnvelealdlldldgg....ssfDlvvasnvlhhl..kdirevldn 88 
                      L+iG+G G l ++ +++  ++ ++g++ ++++  +  e+  +r+++  +++++  + +++l +       fDl+v   + + l  + i  +l++
       KOO22522.1 111 LDIGTGFGLLGMVAARA--GALVVGCEMNTAVA-AVCERVVERNGLA-ARMQVLPRRSDELTPHvldgRRFDLIVTETLDSELlrEGIVPTLRH 200
                      8****************..**************.8888888888755.566666666666777789999******999999989999******9 PP

  Methyltransf_12  89 ir.klLkpgGrl 99 
                      +   lL+pgGr+
       KOO22522.1 201 AQaVLLAPGGRI 212
                      995678999986 PP

>> Methyltransf_31  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.0   0.0   2.3e-06    0.0038       7      84 ..     110     185 ..     106     255 .. 0.81

  Alignments for each domain:
  == domain 1  score: 17.0 bits;  conditional E-value: 2.3e-06
  Methyltransf_31   7 vlDlGCGtGeltfelaeelgpkaevvGiDiseeaielArenaqklgld.nveFeqgdieelekl.ledekfDlilsnevl 84 
                      vlD+G+G G l+ ++a +   +a vvG +++  +  +++   +++gl  ++++      el  + l  ++fDli++ e+l
       KOO22522.1 110 VLDIGTGFGLLGMVAA-R--AGALVVGCEMNTAVAAVCERVVERNGLAaRMQVLPRRSDELTPHvLDGRRFDLIVT-ETL 185
                      8***************.4..4689***********************999999999999988888888*******9.565 PP

>> MTS  Methyltransferase small domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.0   3.2e-06    0.0053      35     103 ..     110     182 ..      94     216 .. 0.78

  Alignments for each domain:
  == domain 1  score: 16.3 bits;  conditional E-value: 3.2e-06
                 EEEET-TTSHHHHHHHHHTTC.EEEEEESBHHHHHHHHHHHHHTTGC..EEEE..E-STTT.TST.TS-EEEEEE CS
         MTS  35 vlDlGcGaGvlgaalakespeaevtlvdvdarAlesakenleankle..vevv..asdvle.eve.ekkfdlivs 103
                 vlD+G+G+G+lg+++a++     v+ ++ +++  +++++ +e+n+l+  ++v+   sd l  +v   ++fdliv+
  KOO22522.1 110 VLDIGTGFGLLGMVAARAGAL--VVGCEMNTAVAAVCERVVERNGLAarMQVLprRSDELTpHVLdGRRFDLIVT 182
                 9*************9997766..9********99***********996644431133333212222456777765 PP

>> CMAS  Mycolic acid cyclopropane synthetase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.0     6e-06    0.0098      66     122 ..     110     165 ..      88     185 .. 0.87

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 6e-06
                 EEEES-TTSHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHTS-SSS-EEEEES-GG CS
        CMAS  66 lLdiGcGWGslvrraverydvkvvglTlSkeqaklakkrvdeldlerkvevklldye 122
                 +LdiG+G+G l + a++  ++ vvg  + +  a++++++v++ +l+ + +v+     
  KOO22522.1 110 VLDIGTGFGLLGMVAARA-GALVVGCEMNTAVAAVCERVVERNGLAARMQVLPRRSD 165
                 8************99999.*****************************999766555 PP

>> Methyltransf_24  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.0       1.8   2.9e+03      73      78 ..      79      84 ..       9     106 .. 0.54
   2 !   14.6   0.0   3.2e-05     0.053       3     101 ..     113     212 ..     111     214 .. 0.69

  Alignments for each domain:
  == domain 1  score: -0.7 bits;  conditional E-value: 1.8
  Methyltransf_24 73 lfiDgg 78
                     ++ Dg+
       KOO22522.1 79 MLKDGP 84
                     333444 PP

  == domain 2  score: 14.6 bits;  conditional E-value: 3.2e-05
  Methyltransf_24   3 iGvysGvstlwllralrrngagrlvavdhdpg.aeeaaalareaglddrvrlikadseealasla.agsiDllf...iDgghaaeavledleal 91 
                      iG   G+  l ++  + r+ga  +v ++ + + a+  +++++++gl++r++++  +s+e+ +++   +++Dl++   +D +   e   + l+++
       KOO22522.1 113 IG--TGFGLLGMV--AARAGA-LVVGCEMNTAvAAVCERVVERNGLAARMQVLPRRSDELTPHVLdGRRFDLIVtetLDSELLREGIVPTLRHA 201
                      66..555444444..334443.588888888444445556666*******************9887889****833346666668888888888 PP

  Methyltransf_24  92 lp.rlapggvv 101
                      +  +lapgg +
       KOO22522.1 202 QAvLLAPGGRI 212
                      76355688766 PP

>> Methyltransf_11  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   0.1   3.4e-05     0.056       1      69 [.     111     184 ..     111     214 .. 0.77

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 3.4e-05
                      EEET-TTSHHHHHHHHTTSEEEEEES-HHHHHHHHHHCCHHT-..EEEETTEECCCT.S..S-TT-EEEEEEES CS
  Methyltransf_11   1 LdvGcGtGrlaealakrgarvvgvDlskemlklakekaseegl..kvefvvadaekl.p..fednsfDlvvsse 69 
                      Ld+G+G G+l    a++ga vvg+++++++ +++++ ++++gl  +++++  +  +l p  +    fDl+v   
       KOO22522.1 111 LDIGTGFGLLGMVAARAGALVVGCEMNTAVAAVCERVVERNGLaaRMQVLPRRSDELtPhvLDGRRFDLIVTET 184
                      8*********************************9999999998877777777777655645557999988654 PP

>> Methyltransf_16  Lysine methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.0   2.5e-05     0.041      42     126 ..     102     182 ..      42     187 .. 0.76
   2 ?   -3.3   0.0       3.9   6.3e+03     103     134 ..     241     270 ..     235     277 .. 0.65

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 2.5e-05
  Methyltransf_16  42 anelsklsvlELGsGtGlvGlavaellpeakviltDlee.llellkknielnknalkskvkvevLdWgeeleedllekeevDlila 126
                      a++ ++  vl++G G Gl G+++a++  +a v+   ++  +  + ++ +e n+  l+ +++v +    +el++++l+ +++Dli+ 
       KOO22522.1 102 ARHGAPPLVLDIGTGFGLLGMVAARA--GALVVGCEMNTaVAAVCERVVERNG--LAARMQVLPRR-SDELTPHVLDGRRFDLIVT 182
                      45566778*****************9..8888888888834556667777755..66666665555.46799***********985 PP

  == domain 2  score: -3.3 bits;  conditional E-value: 3.9
  Methyltransf_16 103 evLdWgeeleedllekeevDlilaaDcvYled 134
                       vL+W e l + + ++e  D + aa ++ ++ 
       KOO22522.1 241 AVLEW-ETLAPTT-ASELADAVDAAGVTVYAA 270
                      57899.4565655.455678877777765555 PP

>> Methyltransf_23  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   0.00019       0.3       9     116 ..      93     213 ..      84     270 .. 0.65

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00019
  Methyltransf_23   9 lsdklerllpklraggrvLdiGcGtGillevlrengfsvtgvDlspeaveiae.....kakkaqkdqfdeqeaae...........pqgkfdlI 86 
                      + +++   l++  a+  vLdiG+G G l  v+++ g+ v+g +++ +  +  e     +        + +++  +           + ++fdlI
       KOO22522.1  93 IEEAVRTHLARHGAPPLVLDIGTGFGLLGMVAARAGALVVGCEMNTAVAAVCErvverN------GLAARMQVLPrrsdeltphvlDGRRFDLI 180
                      33444444456677889**********99999*****9999999865333332444431......333233222233333333444566****9 PP

  Methyltransf_23  87 vlrevlehvpd..ppellrqiat.llkpgGyll 116
                      v   +   +       +lr++++ ll+pgG+++
       KOO22522.1 181 VTETLDSELLRegIVPTLRHAQAvLLAPGGRIV 213
                      987766666533577889999987888999886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (340 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       318  (0.0177366); expected 358.6 (0.02)
Passed bias filter:                      238  (0.0132746); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.45u 0.24s 00:00:00.69 Elapsed: 00:00:00.39
# Mc/sec: 2585.27
//
Query:       KOO22523.1  [L=191]
Description: hypothetical protein Ctob_000756 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (191 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       177  (0.00987227); expected 358.6 (0.02)
Passed bias filter:                      140  (0.00780858); expected 358.6 (0.02)
Passed Vit filter:                         5  (0.000278878); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.23s 00:00:00.61 Elapsed: 00:00:00.39
# Mc/sec: 1475.71
//
Query:       KOO22524.1  [L=137]
Description: tbc domain-containing protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.5e-13   51.0   0.0    1.7e-13   50.7   0.0    1.1  1  RabGAP-TBC  Rab-GTPase-TBC domain


Domain annotation for each model (and alignments):
>> RabGAP-TBC  Rab-GTPase-TBC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.7   0.0   9.6e-18   1.7e-13     131     215 .]       1      85 [.       1      85 [. 0.93

  Alignments for each domain:
  == domain 1  score: 50.7 bits;  conditional E-value: 9.6e-18
  RabGAP-TBC 131 lpglkrklkvleellkkkdpklykhlkeegldlelfaikwfltlflrefpletvlrlwD.lllegekfvllrvalailklleeell 215
                 ++gl+ ++  l +++ ++ p+  + l++eg+ ++  +++w+l+ fl ++ple +lr+wD l++ g+ + llr a+a + l+ee ll
  KOO22524.1   1 MEGLHVAQAALLDVIAATTPRALERLQREGVPIKEQSTSWLLCAFLDSLPLESTLRVWDmLFVDGQ-VALLRAAAAAFALHEEALL 85 
                 5789999999*************************************************7777887.88*********99999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (137 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       298  (0.0166211); expected 358.6 (0.02)
Passed bias filter:                      197  (0.0109878); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.25s 00:00:00.64 Elapsed: 00:00:00.42
# Mc/sec: 977.50
//
Query:       KOO22525.1  [L=321]
Description: flagellar associated protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.098   13.2   0.3       0.52   10.9   0.1    2.2  2  FliG_N    FliG N-terminal domain


Domain annotation for each model (and alignments):
>> FliG_N  FliG N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.1   2.9e-05      0.52      40      95 ..     123     180 ..      76     186 .. 0.79
   2 ?   -3.4   0.0       0.8   1.4e+04       8      20 ..     241     253 ..     237     255 .. 0.80

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 2.9e-05
                 HCHTTXXHHHHHHHHHHHHHHHHCC..CCHHCHHHHHHHHHHHHHHSHHHHHHHCHHH CS
      FliG_N  40 aslksvskeeveaVleefleeleaq..eylseggeeyarelLekalgeekaeellerl 95 
                  ++ +  +e  +aVl e  e l+a   +y   +g ++a + L   l++++  +l+++l
  KOO22525.1 123 FRMANCYSEATDAVLLEHFESLKALfeTYSLAEGVDFANRQLATVLSSDEWMQLMKDL 180
                 57889999***********999997779***************************987 PP

  == domain 2  score: -3.4 bits;  conditional E-value: 0.8
                 HHHHHHHCXHHHH CS
      FliG_N   8 aAilllaLgeeea 20 
                 a i+++ L e++a
  KOO22525.1 241 AGIFMMNLKENRA 253
                 6799999999988 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (321 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       593  (0.0330749); expected 358.6 (0.02)
Passed bias filter:                      458  (0.0255452); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.24s 00:00:00.70 Elapsed: 00:00:00.40
# Mc/sec: 2424.18
//
Query:       KOO22526.1  [L=202]
Description: hypothetical protein Ctob_000760 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (202 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       245  (0.013665); expected 358.6 (0.02)
Passed bias filter:                      210  (0.0117129); expected 358.6 (0.02)
Passed Vit filter:                        11  (0.000613531); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.26s 00:00:00.64 Elapsed: 00:00:00.41
# Mc/sec: 1485.30
//
Query:       KOO22527.1  [L=181]
Description: hypothetical protein Ctob_000754 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
  ------ inclusion threshold ------
       0.85    9.4  13.3        1.2    8.9  13.3    1.3  1  RR_TM4-6       Ryanodine Receptor TM 4-6
        1.7    8.2  15.3          2    7.9  15.3    1.0  1  Peptidase_S30  Potyvirus P1 protease
        3.8    6.8  16.3        5.4    6.3  16.3    1.3  1  DUF4407        Domain of unknown function (DUF4407)
        6.1    5.8  13.6        7.1    5.6  13.6    1.0  1  BAF1_ABF1      BAF1 / ABF1 chromatin reorganising factor


Domain annotation for each model (and alignments):
>> RR_TM4-6  Ryanodine Receptor TM 4-6
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.9  13.3   0.00026       1.2      68     161 ..      57     147 ..      40     175 .. 0.39

  Alignments for each domain:
  == domain 1  score: 8.9 bits;  conditional E-value: 0.00026
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXX..........XXXXXXXXXXXXXX.XXXXXXXXXX CS
    RR_TM4-6  68 agLgDlseteaeesptpelkkklaeeeeaeeekeeeeepeaeaeekadaengekeekekekeeeekeseeeeeekkkkkkaksk.kkeeaeaees 161
                 agL D+  ++a++ ++   + k+   + a++e+ee+   e e+ +k+ ae++ k+ ++ e ++++k++++   +++++kk  ++ +k+++ a +s
  KOO22527.1  57 AGLDDFAAEQAAKDAA--FQAKKDALKRAQQEQEEKAAAEYEKAQKTIAEREAKKLAAIEDAKAKKAAAA--AAAAAEKKVVASgEKKSTGATSS 147
                 5666666666666643..3333332223333333333333333222222222222222221111111111..11111111111101111111111 PP

>> Peptidase_S30  Potyvirus P1 protease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.9  15.3   0.00046         2       3     105 ..      69     172 ..      63     177 .. 0.85

  Alignments for each domain:
  == domain 1  score: 7.9 bits;  conditional E-value: 0.00046
  Peptidase_S30   3 leakvaerllrke....askikaekkgrvilrklsekqvkkkrekekreeeeerqflqlaaasivskitpkttekvsktesvsfrtk.lkkrttkk 93 
                    ++a+ +++    +    ++++++e+k ++ ++k+++++++++++k++  e+++ ++   aaa+ ++k +++++ek+s+++++s+++  +  +t+ k
     KOO22527.1  69 KDAAFQAK----KdalkRAQQEQEEKAAAEYEKAQKTIAEREAKKLAAIEDAKAKKAAAAAAAAAEKKVVASGEKKSTGATSSDKKSkYAVQTVNK 160
                    33344444....445559*****************************************************************9999899999999 PP

  Peptidase_S30  94 mkkkkkkkkvkm 105
                      ++   +++ +
     KOO22527.1 161 QAERISAREASG 172
                    988888777766 PP

>> DUF4407  Domain of unknown function (DUF4407)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.3  16.3    0.0012       5.4     136     219 ..      64     162 ..      32     178 .. 0.54

  Alignments for each domain:
  == domain 1  score: 6.3 bits;  conditional E-value: 0.0012
     DUF4407 136 aeleaqiaalqaeidaaearldalraeaqkeldgtkgtgttgvaGkgpaakekkaqldaaqaelaelkakld...............atarlaalrael 219
                 ae  a+ aa qa+ da++++ ++++++a++e++ +++t  ++ a k +a + +ka+ +aa a+ a+ k+ +                ++ ++++ ++++
  KOO22527.1  64 AEQAAKDAAFQAKKDALKRAQQEQEEKAAAEYEKAQKTIAEREAKKLAAIEDAKAKKAAAAAAAAAEKKVVAsgekkstgatssdkkSKYAVQTVNKQA 162
                 455556667777777777777777777777777766544444444444444444444444433333333333333555444432222111111111111 PP

>> BAF1_ABF1  BAF1 / ABF1 chromatin reorganising factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.6  13.6    0.0016       7.1     105     197 ..      74     167 ..      39     177 .. 0.51

  Alignments for each domain:
  == domain 1  score: 5.6 bits;  conditional E-value: 0.0016
   BAF1_ABF1 105 teeseeatkasaeaeteslkkdeseenketqkkkeadaadedddvsaaiaaAVaavadsknakeekkeekakkeedaeen.tnknenndasisq 197
                 + ++++ ++a++e+e + + + e+++++ ++++ ++ aa ed++ + a aaA aa++++  a++ekk + a+++ ++++   ++ +++ + is+
  KOO22527.1  74 QAKKDALKRAQQEQEEKAAAEYEKAQKTIAEREAKKLAAIEDAKAKKAAAAAAAAAEKKVVASGEKKSTGATSSDKKSKYaVQTVNKQAERISA 167
                 2233333333333333333333444334444444444566777776666666666666655555554444433333333202222222233333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (181 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      3029  (0.168944); expected 358.6 (0.02)
Passed bias filter:                      852  (0.0475208); expected 358.6 (0.02)
Passed Vit filter:                       143  (0.0079759); expected 17.9 (0.001)
Passed Fwd filter:                        16  (0.000892409); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.54u 0.29s 00:00:00.83 Elapsed: 00:00:00.42
# Mc/sec: 1304.68
//
Query:       KOO22528.1  [L=359]
Description: expressed unknown protein, partial [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.3e-12   47.3   0.2    5.3e-06   25.6   0.0    3.7  3  mTERF     mTERF


Domain annotation for each model (and alignments):
>> mTERF  mTERF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.8   0.0   7.7e-05       1.4      16      66 ..      78     127 ..      69     129 .. 0.86
   2 !   25.6   0.0     3e-10   5.3e-06     126     291 ..     115     275 ..     114     280 .. 0.86
   3 !   10.5   0.1   1.2e-05      0.21      12      42 ..     282     312 ..     278     316 .. 0.91

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 7.7e-05
       mTERF  16 kiltryPqvlladvekelapklkaLkslgasssdlteilskyPkiLskkle 66 
                  +++r P vl +d e +l+p+l aL++      d++ ++ + P +L+  l+
  KOO22528.1  78 ILMLRAPLVLASDLEWTLEPRLAALRE-LLPGVDIPTLVVRAPAVLELDLQ 127
                 567899****************99998.578899***********987665 PP

  == domain 2  score: 25.6 bits;  conditional E-value: 3e-10
       mTERF 126 lisrpqvlaldlekkvkpkeieekVevlkelglskedvwkilkkyPeiLalsekklkkkiefLkkl..glseeellrvikkyPqilslseekilksvet 222
                 + ++p vl ldl+  ++p+     V  l+ +  +  dv++ + + P++L l+   l++ +  L +l  g+s++   +++ + P +l +  e+++ +++ 
  KOO22528.1 115 VVRAPAVLELDLQTMLEPR-----VRQLEAMLPKGVDVARTVRRAPTLLHLP--DLEQRLAALGALlpGVSSS---QLVSRAPSLLAYAPEAVVRKLDE 203
                 6678999999999999998.....999999999999***************9..7778888887541255555...5899******************* PP

       mTERF 223 LlglGfskeevakmvkrfpqllglsae.vlkkkleflvkem.kk.plkevveyPrvlgysLEkrikpR.ikal 291
                 L +l  s  + a mvkr p ll +++  +l  k+  + + + +    k +v  Pr+l+y+   ++ pR   al
  KOO22528.1 204 LAELFGSAANAAAMVKREPALLTYDVRhTLAAKVRVFETWLpNLdATKLLVAAPRLLSYDV-ATMLPRkLAAL 275
                 ***************************9******9998876223256789***********.99999976666 PP

  == domain 3  score: 10.5 bits;  conditional E-value: 1.2e-05
       mTERF  12 sqiskiltryPqvlladvekelapklkaLks 42 
                 ++i +++++ Pq+l +dve++l pkl+aL+ 
  KOO22528.1 282 ADIPRLIKSVPQLLEYDVETKLPPKLTALRA 312
                 68999**********************9985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (359 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       310  (0.0172904); expected 358.6 (0.02)
Passed bias filter:                      243  (0.0135535); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.22s 00:00:00.64 Elapsed: 00:00:00.37
# Mc/sec: 2944.72
//
Query:       KOO22529.1  [L=152]
Description: cyclic nucleotide-binding domain containing protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    7.9e-10   38.7   0.0    1.1e-09   38.2   0.0    1.2  1  cNMP_binding  Cyclic nucleotide-binding domain


Domain annotation for each model (and alignments):
>> cNMP_binding  Cyclic nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.2   0.0   6.1e-14   1.1e-09       1      67 [.      72     133 ..      72     138 .. 0.91

  Alignments for each domain:
  == domain 1  score: 38.2 bits;  conditional E-value: 6.1e-14
                   EEEE-TT-EEE-TTSB-SEEEEEEES-EEEEEEETTS.EEEEEEE-TTEEESHHHHHHTS--SSEEE CS
  cNMP_binding   1 rrsfkagevifrqGdpadslyivlsGevrvyrlsedgkevvlavlgpGdlfGelalltgeprtatvv 67 
                   rrs++ag+++++qG+  dslyiv+sG ++v     dgk+  l+ lgp ++fG +al +g+ ++a ++
    KOO22529.1  72 RRSYEAGSTVVQQGELYDSLYIVESGDAEV---LCDGKR--LGSLGPRQHFGGRALRQGAAQPAEIT 133
                   699***************************...79**77..9**************98888888765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (152 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       224  (0.0124937); expected 358.6 (0.02)
Passed bias filter:                      214  (0.011936); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.21s 00:00:00.57 Elapsed: 00:00:00.36
# Mc/sec: 1263.96
//
Query:       KOO22530.1  [L=387]
Description: hypothetical protein Ctob_000748 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    0.00059   19.9   0.3    0.00059   19.9   0.3    2.3  2  Swi5      Swi5
  ------ inclusion threshold ------
       0.01   15.7   0.0      0.029   14.3   0.0    1.8  1  TBPIP     TBPIP/Hop2 winged helix domain
      0.023   14.8   2.3      0.036   14.2   2.3    1.2  1  Mod_r     Modifier of rudimentary (Mod(r)) protein
       0.24   11.3   3.7        1.7    8.5   0.0    3.2  3  HTH_IclR  IclR helix-turn-helix domain
       0.42   10.5   2.9       0.52   10.2   0.0    2.5  3  MarR_2    MarR family


Domain annotation for each model (and alignments):
>> Swi5  Swi5
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.4   0.9      0.19   6.9e+02       2      27 ..     238     263 ..     230     276 .. 0.58
   2 !   19.9   0.3   1.7e-07   0.00059       2      78 ..     275     356 ..     267     358 .. 0.85

  Alignments for each domain:
  == domain 1  score: 0.4 bits;  conditional E-value: 0.19
                 HHHHHHHHHHHHHHHHHHHHHHHHHH CS
        Swi5   2 eaeikeleeqleelekelaelkeelk 27 
                 e++i++ ++q  + ++e+++l + lk
  KOO22530.1 238 ERQIADAKAQALARQAEVSKLAQALK 263
                 44555555555555555555555554 PP

  == domain 2  score: 19.9 bits;  conditional E-value: 1.7e-07
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHH......HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTSHCGGGHHHCT-X CS
        Swi5   2 eaeikeleeqleelekelaelkeelkekk.....dpeetvkrhIklLheYNEiKDvgqgLigliAeargvrikevfeefGve 78 
                 +aei++ ++ +++ e+el +lk+ l++ +     + ++++k++++l + Y + + ++++++++  ea+gv++k++++++G+e
  KOO22530.1 275 KAEIASARAACQAAEEELGALKKALGAGApmseaEEATVLKEYVRLRKLYLDRRRAALEVLEQMGEAQGVTTKKLMDDLGLE 356
                 4567777777777777777777777766699998889999****************************************98 PP

>> TBPIP  TBPIP/Hop2 winged helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   0.0   8.2e-06     0.029       6      61 ..     166     221 ..     162     222 .. 0.95

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 8.2e-06
       TBPIP   6 vleylqeqnrPfsvqdvvanlqkklgKtavqkaLdeLvdegkiieKeyGKqkiYla 61 
                 vl++l++   P+ +q +++ ++++l+K  + +   eL+++g+  ++e  K k+Y a
  KOO22530.1 166 VLDFLRQACAPMTAQAIADHFHGGLSKGEAERRCAELAAAGQADTRESAKIKLYWA 221
                 899***************************************************76 PP

>> Mod_r  Modifier of rudimentary (Mod(r)) protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   2.3   9.9e-06     0.036      61     143 ..     235     328 ..     221     330 .. 0.79

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 9.9e-06
       Mod_r  61 selqekleelkelekefeekeqeldellqkfspdallarLqtavaeaeeeSealaeefle...........geieldeFvkefkekRklyHlrk 143
                 ++l+ ++  +k+   + ++  ++l ++l+ ++++  l+ +++++a a   ++a +ee+             +e e  + +ke+   Rkly  r+
  KOO22530.1 235 ADLERQIADAKAQALARQAEVSKLAQALKVLQQARSLSEVKAEIASARAACQAAEEELGAlkkalgagapmSEAEEATVLKEYVRLRKLYLDRR 328
                 4555555555555555566667777788888888999999999999999999988888877899999****9******************9886 PP

>> HTH_IclR  IclR helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.5   0.0   0.00048       1.7       8      46 ..     166     206 ..     165     211 .. 0.92
   2 ?   -1.0   0.2      0.43   1.5e+03      24      32 ..     249     257 ..     237     283 .. 0.67
   3 ?    1.9   0.1     0.054   1.9e+02       5      31 ..     331     356 ..     330     357 .. 0.87

  Alignments for each domain:
  == domain 1  score: 8.5 bits;  conditional E-value: 0.00048
                 HHCT-CTTBSS-BHHHHHHHH..TS-HHHHHHHHHHHHHTT CS
    HTH_IclR   8 iLdalaeapqeltlselArrt..glpkStvhRlLqtLvelG 46 
                 +Ld+l++a  ++t + +A+++  gl+k  + R ++ L   G
  KOO22530.1 166 VLDFLRQACAPMTAQAIADHFhgGLSKGEAERRCAELAAAG 206
                 8******************99778***********999887 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 0.43
                 HHHHHTS-H CS
    HTH_IclR  24 lArrtglpk 32 
                 lAr++ ++k
  KOO22530.1 249 LARQAEVSK 257
                 444444443 PP

  == domain 3  score: 1.9 bits;  conditional E-value: 0.054
                 HHHHHCT-CTTBSS-BHHHHHHHHTS- CS
    HTH_IclR   5 alaiLdalaeapqeltlselArrtglp 31 
                 al++L++ +ea++ +t + l + +gl 
  KOO22530.1 331 ALEVLEQMGEAQG-VTTKKLMDDLGLE 356
                 899********99.6999999998885 PP

>> MarR_2  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.0   0.00015      0.52      10      56 ..     166     213 ..     165     215 .. 0.84
   2 ?   -1.8   0.1      0.81   2.9e+03      25      35 ..     247     257 ..     233     274 .. 0.60
   3 ?   -1.5   0.1      0.66   2.4e+03       6      35 ..     330     357 ..     325     358 .. 0.82

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.00015
                 HHHHHHCTTTSEEEHHHHHH..HHTSSHHHHHHHHHHHHHTTSEEEEES CS
      MarR_2  10 vLaaLgrrpgrdltvgelar..rlglsksavsrilkrLvaaGLverrpg 56 
                 vL +L+ +  + +t++++a+  + glsk+ + r++++L aaG   +r++
  KOO22530.1 166 VLDFLRQACAP-MTAQAIADhfHGGLSKGEAERRCAELAAAGQADTRES 213
                 67777666655.9*******88889*****************8888866 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 0.81
                 HHHHHHHTSSH CS
      MarR_2  25 gelarrlglsk 35 
                 ++lar   +sk
  KOO22530.1 247 QALARQAEVSK 257
                 44444444444 PP

  == domain 3  score: -1.5 bits;  conditional E-value: 0.66
                 HHHHHHHHHHCTTTSEEEHHHHHHHHTSSH CS
      MarR_2   6 aqarvLaaLgrrpgrdltvgelarrlglsk 35 
                 a + vL   g + g  +t + l + lgl++
  KOO22530.1 330 AALEVLEQMGEAQG--VTTKKLMDDLGLER 357
                 56678999999999..99999999999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (387 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1383  (0.0771376); expected 358.6 (0.02)
Passed bias filter:                      555  (0.0309554); expected 358.6 (0.02)
Passed Vit filter:                        62  (0.00345808); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.51u 0.27s 00:00:00.78 Elapsed: 00:00:00.38
# Mc/sec: 3043.30
//
Query:       KOO22531.1  [L=305]
Description: morn repeat-containing protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    0.00022   20.9   4.5      0.006   16.4   0.7    3.1  3  MORN      MORN repeat
  ------ inclusion threshold ------
      0.014   15.2   0.0      0.026   14.3   0.0    1.4  1  DUF922    Bacterial protein of unknown function (DUF922)


Domain annotation for each model (and alignments):
>> MORN  MORN repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.1   0.1    0.0054        49      10      23 .]       1      14 [.       1      14 [. 0.93
   2 !   16.4   0.7   6.6e-07     0.006       1      21 [.      15      35 ..      15      37 .. 0.92
   3 ?   -0.3   0.0      0.13   1.2e+03       4      12 ..      41      49 ..      39      57 .. 0.80

  Alignments for each domain:
  == domain 1  score: 4.1 bits;  conditional E-value: 0.0054
        MORN 10 rhGkGvytwpdGdr 23
                +hG G+++ p+Gd+
  KOO22531.1  1 MHGTGRLRHPSGDV 14
                8***********96 PP

  == domain 2  score: 16.4 bits;  conditional E-value: 6.6e-07
        MORN  1 YeGeWknGkrhGkGvytwpdG 21
                YeGe++ Gkr G G y+  +G
  KOO22531.1 15 YEGEFQSGKRSGRGAYHHRSG 35
                **************9998877 PP

  == domain 3  score: -0.3 bits;  conditional E-value: 0.13
        MORN  4 eWknGkrhG 12
                +W+n++  G
  KOO22531.1 41 QWHNDRSVG 49
                9***98776 PP

>> DUF922  Bacterial protein of unknown function (DUF922)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   0.0   2.9e-06     0.026      84     131 ..      83     130 ..      80     138 .. 0.83

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 2.9e-06
      DUF922  84 tllaalerHEevHgeiakeaareiekalksl.ppdpdCeklkeevtkrl 131
                 t l +l+ HEe+Hgei+++ a ++ ++  +l + + +C + +++++++ 
  KOO22531.1  83 TVLTGLRWHEERHGEIMLREAFALARQA-GLeEIALQCGAPRQDMQRVG 130
                 67889*******************6664.55367779999999998875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (305 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       302  (0.0168442); expected 358.6 (0.02)
Passed bias filter:                      234  (0.0130515); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.41u 0.26s 00:00:00.67 Elapsed: 00:00:00.41
# Mc/sec: 2253.83
//
Query:       KOO22532.1  [L=905]
Description: kinesin-like protein kif6-like protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
   1.1e-100  336.8   0.0   1.6e-100  336.3   0.0    1.1  1  Kinesin      Kinesin motor domain
    1.2e-29  103.1   0.0    2.3e-29  102.2   0.0    1.4  1  CRAL_TRIO    CRAL/TRIO domain
    1.4e-24   86.7   0.0    2.6e-24   85.8   0.0    1.4  1  Microtub_bd  Microtubule binding
     0.0034   17.5   0.0      0.012   15.8   0.0    1.9  1  CRAL_TRIO_N  CRAL/TRIO, N-terminal domain
  ------ inclusion threshold ------
      0.058   14.0   0.6       0.21   12.3   0.6    1.9  1  AKNA         AT-hook-containing transcription factor
       0.17   11.0   0.2       0.35   10.0   0.2    1.4  1  PIF1         PIF1-like helicase


Domain annotation for each model (and alignments):
>> Kinesin  Kinesin motor domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  336.3   0.0  5.3e-104  1.6e-100      26     331 ..      39     337 ..      13     339 .. 0.93

  Alignments for each domain:
  == domain 1  score: 336.3 bits;  conditional E-value: 5.3e-104
                 CEEEEEEEEECTTSCEEEEESEEEETTS-HHHHHHHHHHHHHHHHHTTSEEEEEEEESTTSSHHHHHTBC..TTTSBSHHHHHHHHHHHHHHHCTTTHE CS
     Kinesin  26 eeekkskkenkeeeekkfkFdkvfdeeatqeevyeetakplvesvleGynatifaYGqtgsGKTyTmegk..eeeeeGiipraleelFesikkekeeke 122
                 +ee+   + n+++++ kf+Fd v++  atqeev+e++a+p+v sv+eGyn+t+faYGqtgsGKT+T++g      e+Giipr+l+ lF +i++++e   
  KOO22532.1  39 PEEAAGLHVNHKRNQWKFSFDGVLETRATQEEVFERVAEPVVASVFEGYNGTVFAYGQTGSGKTFTLTGGvnAFGERGIIPRTLSALFARIAADTEA-- 135
                 556666778899999******************************************************97766799**************997766.. PP

                 EEEEEEEEEEEEETTEEEETTSTTTTSTSSEBEEEECTTSCCEEETTS--EEESSHHHHHHHHHHHHHHHTSTTSSCTSHHCCSEEEEEEEEEEEETTT CS
     Kinesin 123 kefsvkvsylEiYneeiyDLLeskkskkkkklkiredskkgevyvkgltevevksaeevlellekgeknrkvaetklneeSSRSHavftitleqknlke 221
                  e++v++sylEiYne+ +DLL+s+   ++    ++ed++ g+v +kgl+++ v s e +l+ll +g++nr+v+et++n+ SSRSH+vft+ le++ + +
  KOO22532.1 136 -EYTVRISYLEIYNETGFDLLDSR---QAAVQAVTEDAD-GSVRLKGLSSHVVGSEEAALNLLFVGDTNRAVSETSMNAVSSRSHCVFTVALEARPHGS 229
                 .9********************99...444457999998.66*****************************************************9775 PP

                 TTCEEEEEEEEEEEEEEECCCHHHHSSTCHHHHHHHHHHHHHHHHHHHHHHHHHHT..CCTSTSCGGGSHHHHHTGGGHSSSSEEEEEEEE-TBGGGHH CS
     Kinesin 222 eteekvkisklnLvDLAGsErasktgaaegerlkEaaniNkSLlaLgrvisaLaek..kkskhipYRdSkLTrlLqdsLgGnsktlmivtvspssenle 318
                 +t   v++skl+LvDLAGsEr+ k+ga +g++l+Ea +iN SL+ L+ vi aL e+   +s+h+pYR+S LT +L+dsLgGn+kt+m++tv+p+ ++++
  KOO22532.1 230 ST---VRRSKLHLVDLAGSERVGKSGA-SGTTLNEAIHINSSLFQLELVIMALHERqtASSRHVPYRNSMLTSVLRDSLGGNCKTVMVATVHPAVSHTD 324
                 44...69*******************6.7999**********************9988899************************************** PP

                 HHHHHHHHHHHHC CS
     Kinesin 319 etlstlkfaerak 331
                 e++st kfa+r+ 
  KOO22532.1 325 ESISTCKFAQRVA 337
                 **********986 PP

>> CRAL_TRIO  CRAL/TRIO domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  102.2   0.0   7.6e-33   2.3e-29      12     159 .]     739     891 ..     729     891 .. 0.95

  Alignments for each domain:
  == domain 1  score: 102.2 bits;  conditional E-value: 7.6e-33
   CRAL_TRIO  12 hgrDkegrpvlylrlg.rfdpk.....klsleelvralvlvlerllkeleedgqvegvtvviDlkglslskmlwkpisllkkilkilqdnyperlgkil 104
                 +g D++g p+++ ++g +   k      +sl+ + r+ v+++e+ +++l   ++ + + vviD  g++l  +++  +++lk+++++ + +ype l  +l
  KOO22532.1 739 TGIDRKGCPIIFKVMGaNCRVKlaveaGYSLDAIGRYNVWLNESYMDALAA-AKAREWSVVIDAAGWHLGLFDSYGFKFLKQTATTDSSHYPELLSTML 836
                 689************98888888898877788**************99998.*********************999*********************** PP

   CRAL_TRIO 105 ivnaPklfkfafklvkpfldektreKikfvspsnteatlekyidpeqlpkelGGt 159
                 ivnaP++ ++a++++++++de treKi ++s+++ +a l+k+ dp qlp+++GGt
  KOO22532.1 837 IVNAPPVLAVAWRVIRTWVDEDTREKIDILSSETSRARLHKMADPAQLPAQYGGT 891
                 ******************************************************7 PP

>> Microtub_bd  Microtubule binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   85.8   0.0   8.8e-28   2.6e-24      28     149 .]      25     155 ..       5     155 .. 0.83

  Alignments for each domain:
  == domain 1  score: 85.8 bits;  conditional E-value: 8.8e-28
                  EECCCS-T.EEEETT.T..........TTTEEEE-SEEEECTTHCCCCCCCCHH.HHHHHHTT--EEEEEEES...................ST-HCH CS
  Microtub_bd  28 vrpelesekakikfp.e.......eekkkkkefsFdrvfeseseqeevfeeisq.lvqsaldgynvcifaygqTGsGKtyTmeg...eeeeagmipra 113
                  v+p+  ++ +++++p e       ++k+++ +fsFd v+e+ ++qeevfe ++  +v s+++gyn ++faygqTGsGKt+T++g      e+g ipr+
   KOO22532.1  25 VDPSAPNK-VEVSVPpEeaaglhvNHKRNQWKFSFDGVLETRATQEEVFERVAEpVVASVFEGYNGTVFAYGQTGSGKTFTLTGgvnAFGERGIIPRT 121
                  34444443.5666665157788887889999*******************98651677777***********************88667899****** PP

                  HHHHHHHHHCCTSCCCCEEEEEEEEEEESS-EEETT CS
  Microtub_bd 114 veeifetiselkekgwkyeielqfveiynekvqDlL 149
                  ++++f  i+    ++++y+++++++eiyne+  DlL
   KOO22532.1 122 LSALFARIAAD--TEAEYTVRISYLEIYNETGFDLL 155
                  **********9..89*******************98 PP

>> CRAL_TRIO_N  CRAL/TRIO, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.0   3.9e-06     0.012      32      51 ..     679     698 ..     668     700 .. 0.85

  Alignments for each domain:
  == domain 1  score: 15.8 bits;  conditional E-value: 3.9e-06
  CRAL_TRIO_N  32 aclLRfLRArkwdvekAikr 51 
                    lLR+LRAr  +vekA  +
   KOO22532.1 679 DALLRYLRARHHNVEKAANQ 698
                  479**************765 PP

>> AKNA  AT-hook-containing transcription factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.6   6.9e-05      0.21      16      80 ..     425     488 ..     415     502 .. 0.78

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 6.9e-05
        AKNA  16 lkglrsetlaqklssskgqpgkfdpsreleaeIyqlg.qrleeLkdqtdqlkqkveefskdiaqds 80 
                  ++l+ +  a + ++s++ ++++  +  le+++y++g   l eLk  ++ l+ + +++ ++++ d 
  KOO22532.1 425 GTALEGQ--AGNQAGSQAGEERMRAQLTLETTLYKGGvASLKELKGEIESLQLQLQRSQQRLQADF 488
                 4445444..455677778888889***********994579*********************9995 PP

>> PIF1  PIF1-like helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   0.2   0.00012      0.35       7      40 ..      73     106 ..      65     118 .. 0.81

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.00012
                 HHHHHHH......HCTS-EEEEESTTSSCHHHHH CS
        PIF1   7 kkvfdaiieavlnekgklfFvtGsgGtgKtflwk 40 
                 ++v++ ++++v++   +++F +G+ G+gKtf ++
  KOO22532.1  73 ERVAEPVVASVFEGYNGTVFAYGQTGSGKTFTLT 106
                 3566677889999999***************765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (905 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       729  (0.0406604); expected 358.6 (0.02)
Passed bias filter:                      515  (0.0287244); expected 358.6 (0.02)
Passed Vit filter:                        63  (0.00351386); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.69u 0.29s 00:00:00.98 Elapsed: 00:00:00.45
# Mc/sec: 6041.43
//
Query:       KOO22533.1  [L=320]
Description: hypothetical protein Ctob_000757 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00016   21.6   3.2    0.00016   21.6   3.2    2.5  2  zf-CCHC    Zinc knuckle
    0.00022   21.1   0.8    0.00022   21.1   0.8    2.3  2  zf-CCHC_3  Zinc knuckle
     0.0006   19.5   2.6     0.0018   18.0   2.6    1.8  1  zf-CCHC_5  GAG-polyprotein viral zinc-finger


Domain annotation for each model (and alignments):
>> zf-CCHC  Zinc knuckle
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.4   0.6     0.066     4e+02       2       7 ..      94      99 ..      93     101 .. 0.81
   2 !   21.6   3.2   2.6e-08   0.00016       2      17 ..     164     179 ..     163     180 .. 0.93

  Alignments for each domain:
  == domain 1  score: 1.4 bits;  conditional E-value: 0.066
                CTSSSS CS
     zf-CCHC  2 kCynCG 7 
                 C++C+
  KOO22533.1 94 ECRKCN 99
                7****8 PP

  == domain 2  score: 21.6 bits;  conditional E-value: 2.6e-08
                 CTSSSSSSSSTTTTST CS
     zf-CCHC   2 kCynCGepGHiardCp 17 
                  C +CG+ GH+ar C+
  KOO22533.1 164 RCKKCGQLGHWARHCT 179
                 7**************8 PP

>> zf-CCHC_3  Zinc knuckle
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.3   0.4      0.18   1.1e+03       3      10 ..      91      98 ..      89     101 .. 0.81
   2 !   21.1   0.8   3.7e-08   0.00022       2      23 ..     160     183 ..     159     192 .. 0.79

  Alignments for each domain:
  == domain 1  score: -0.3 bits;  conditional E-value: 0.18
   zf-CCHC_3  3 asaaCQkC 10
                ++  C kC
  KOO22533.1 91 YRRECRKC 98
                6789**** PP

  == domain 2  score: 21.1 bits;  conditional E-value: 3.7e-08
   zf-CCHC_3   2 nasaaCQkClkkGHwtYECkn..a 23 
                 +++ +C+kC++ GHw+  C++  a
  KOO22533.1 160 GETGRCKKCGQLGHWARHCTAavA 183
                 6889************99995443 PP

>> zf-CCHC_5  GAG-polyprotein viral zinc-finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.0   2.6   2.9e-07    0.0018       3      31 ..     163     191 ..     161     195 .. 0.78

  Alignments for each domain:
  == domain 1  score: 18.0 bits;  conditional E-value: 2.9e-07
                 -B-TTT-SSBS-TTT---SEEGGGEE--- CS
   zf-CCHC_5   3 glCpRCkkgkHwardChskfdknGnpLsa 31 
                 g+C +C++  Hwar C +       pL a
  KOO22533.1 163 GRCKKCGQLGHWARHCTAAVAGSKRPLAA 191
                 9***************9866555555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (320 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1400  (0.0780858); expected 358.6 (0.02)
Passed bias filter:                      621  (0.0346366); expected 358.6 (0.02)
Passed Vit filter:                        53  (0.0029561); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.49u 0.27s 00:00:00.76 Elapsed: 00:00:00.42
# Mc/sec: 2275.84
//
Query:       KOO22534.1  [L=240]
Description: RNA polymerase ii subunit b1 ctd phosphatase rpap2 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.9e-20   72.9   0.0    3.4e-20   72.1   0.0    1.4  1  RPAP2_Rtr1  Rtr1/RPAP2 family


Domain annotation for each model (and alignments):
>> RPAP2_Rtr1  Rtr1/RPAP2 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   72.1   0.0   1.9e-24   3.4e-20       1      75 []      48     121 ..      48     121 .. 0.97

  Alignments for each domain:
  == domain 1  score: 72.1 bits;  conditional E-value: 1.9e-24
                 GG--HHHHHHHHHHHHCTT--SSTT--S--SS-----------.....--TTGGGGT-SSHHHHHHHHHHHHCS- CS
  RPAP2_Rtr1   1 rllspsdyddvveERniekkCGyplCnnsleedkrqkekyrisrkakkvvereelekfCSkaCaerslavraqLs 75 
                 r+l+ps+y+d+v ER i+++CGyp+C+n+++ +  q  k+++s  +++v++++ l++fC ++Ca+rs a+ ++Ls
  KOO22534.1  48 RVLQPSHYEDIVAERAIDGLCGYPPCTNAAPLKG-QGPKFHVSIDDRRVYDISSLHSFCGRECARRSHAYATSLS 121
                 589***************************9988.9***********************************9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (240 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1018  (0.0567795); expected 358.6 (0.02)
Passed bias filter:                      411  (0.0229238); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.27s 00:00:00.71 Elapsed: 00:00:00.42
# Mc/sec: 1730.74
//
Query:       KOO22535.1  [L=826]
Description: serine threonine-protein phosphatase 6 regulatory ankyrin repeat subunit a [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
   1.1e-121  397.6  60.6    3.2e-16   59.7   1.2   10.9 11  Ank_2          Ankyrin repeats (3 copies)
   1.3e-105  344.5  16.3    6.1e-11   42.6   0.1   13.5 15  Ank_4          Ankyrin repeats (many copies)
   4.3e-101  327.3  62.6    1.8e-05   25.0   0.0   21.1 21  Ank            Ankyrin repeat
    8.6e-95  309.6  37.6    2.4e-09   37.3   0.1   19.2 20  Ank_5          Ankyrin repeats (many copies)
    7.6e-90  284.0  18.8     0.0025   18.2   0.0   21.1 21  Ank_3          Ankyrin repeat
    1.9e-13   50.5  39.0       0.95    9.2   0.0   16.9 14  FAD_binding_5  FAD binding domain in molybdopterin dehydrogen
  ------ inclusion threshold ------
      0.019   14.9  40.0         43    4.1   0.1   14.4 15  UBA            UBA/TS-N domain
        3.3    8.2  72.4        1.9    8.9   5.2   11.6 13  Ribosomal_S11  Ribosomal protein S11


Domain annotation for each model (and alignments):
>> Ank_2  Ankyrin repeats (3 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.4   0.2   3.9e-10   8.7e-07      30      82 ..     114     172 ..     103     173 .. 0.84
   2 !   45.4   0.5   3.9e-15   8.8e-12      25      83 .]     180     244 ..     170     244 .. 0.87
   3 !   40.0   0.1   1.9e-13   4.3e-10      25      83 .]     246     310 ..     239     310 .. 0.89
   4 !   37.7   0.1     1e-12   2.3e-09      23      83 .]     313     376 ..     308     376 .. 0.89
   5 !   45.5   0.3   3.9e-15   8.7e-12      25      82 ..     378     441 ..     374     442 .. 0.88
   6 !   40.4   0.2   1.5e-13   3.3e-10      22      83 .]     442     505 ..     435     505 .. 0.85
   7 !   52.0   1.0   3.5e-17   7.9e-14       1      82 [.     482     570 ..     482     571 .. 0.87
   8 !   53.3   1.2   1.4e-17   3.1e-14       1      83 []     512     604 ..     512     604 .. 0.89
   9 !   58.7   0.3   2.9e-19   6.5e-16       1      83 []     578     670 ..     578     670 .. 0.87
  10 !   58.6   0.5   3.1e-19     7e-16       1      83 []     644     736 ..     644     736 .. 0.89
  11 !   59.7   1.2   1.4e-19   3.2e-16       1      80 [.     710     799 ..     710     802 .. 0.89

  Alignments for each domain:
  == domain 1  score: 29.4 bits;  conditional E-value: 3.9e-10
       Ank_2  30 LhyAakngnleivklLleh......adndgrtpLhyAarsghleivklLlekgadinlk 82 
                 +h Aa+++++  +  L+++      +d++ rtpLh+Aa +gh +++k L+  ga+++++
  KOO22535.1 114 MHRAARANDVTKIDELVAAgasveaQDDEKRTPLHIAAAQGHADAIKALVAAGASVEAR 172
                 7999**9976669999986667676779999*******9***********989998765 PP

  == domain 2  score: 45.4 bits;  conditional E-value: 3.9e-15
       Ank_2  25 ngktaLhyAakngnleivklLleh......adndgrtpLhyAarsghleivklLlekgadinlkd 83 
                  + t+Lh+Aa  g+ +++k+L ++      +dn+ +tpLh+Aa +gh +++k L+  ga+++++d
  KOO22535.1 180 LKATPLHIAAADGHADAIKALAAAgaavetQDNEKMTPLHWAAGNGHADAIKALVAAGASVEAQD 244
                 458*******************96667777779999*******************99***99887 PP

  == domain 3  score: 40.0 bits;  conditional E-value: 1.9e-13
       Ank_2  25 ngktaLhyAakngnleivklLleh......adndgrtpLhyAarsghleivklLlekgadinlkd 83 
                 +++t+Lh+A  +g+ +++k+L+++      +d++ rtpLh Aa +g+ +++k L+  ga+++++d
  KOO22535.1 246 KKRTPLHIAGAQGHADAIKALVAAgalveaQDDKKRTPLHGAAAQGRADAIKALVAAGASVEAQD 310
                 569*******************966787777799*********************99***99887 PP

  == domain 4  score: 37.7 bits;  conditional E-value: 1e-12
       Ank_2  23 nkngktaLhyAakngnleivklLleh......adndgrtpLhyAarsghleivklLlekgadinlkd 83 
                 +   +t+L  A  ng+ +++k+L+++      +d+  rtpLh Aa +gh +++k L+  ga+++++d
  KOO22535.1 313 K---RTPLLSASGNGHADAIKALVAAgasaeaQDDVKRTPLHSAAGNGHADAIKELVAAGASVEAQD 376
                 4...9*******************9666766666889********************99***99887 PP

  == domain 5  score: 45.5 bits;  conditional E-value: 3.9e-15
       Ank_2  25 ngktaLhyAakngnleivklLleh......adndgrtpLhyAarsghleivklLlekgadinlk 82 
                 +++t+Lh Aa ng+ +++k+L+ +      +d++ rtpLh+Aa +gh +++k L+  ga+++++
  KOO22535.1 378 EKRTPLHSAAGNGHADAIKTLVTAgasveaQDDEKRTPLHIAAAEGHADAIKALVAAGASVEAQ 441
                 569*******************866677767799*********************99*999875 PP

  == domain 6  score: 40.4 bits;  conditional E-value: 1.5e-13
       Ank_2  22 pnkngktaLhyAakngnleivklLleh......adndgrtpLhyAarsghleivklLlekgadinlkd 83 
                 +n +++t+Lh+Aa +g+ +++k+L+++      +d++  tp+h+Aa  g+ +++k L+  ga+++++d
  KOO22535.1 442 AN-EKRTPLHIAAAEGHSDAIKALVAAgasveaQDDEKATPMHWAA--GN-DAIKALVAAGASVEAQD 505
                 33.779*******************96667676668888******9..88.*******99***99887 PP

  == domain 7  score: 52.0 bits;  conditional E-value: 3.5e-17
       Ank_2   1 LhlAakngnlelvklLl.egadpn..k.ngktaLhyAakngnleivklLleh...ad...ndgrtpLhyAarsghleivklLlekgadinlk 82 
                 +h+Aa n+   ++k L+ +ga ++  +  ++t+Lh Aa ng+ +++k+L+++   ++   ++ rtpLh Aa +gh +++++L+  ga+++++
  KOO22535.1 482 MHWAAGND---AIKALVaAGASVEaqDdVKRTPLHSAAGNGHADAIKALVAAgasVEalaDEKRTPLHSAAGNGHADAINVLVAAGASVEAQ 570
                 699****9...******9887777642577********************9776733555899********************99*999875 PP

  == domain 8  score: 53.3 bits;  conditional E-value: 1.4e-17
       Ank_2   1 LhlAakngnlelvklLl.egadpn...kngktaLhyAakngnleivklLleh.....ad.ndgrtpLhyAarsghleivklLlekgadinlkd 83 
                 Lh Aa ng+ +++k L+ +ga ++   ++++t+Lh Aa ng+ +++  L+++     a  ++  tpLh+Aa +g+ +++k L+  ga+++++d
  KOO22535.1 512 LHSAAGNGHADAIKALVaAGASVEalaDEKRTPLHSAAGNGHADAINVLVAAgasveAQaDEKATPLHFAAIYGQGDAIKALVAAGASVEAQD 604
                 89******9********9998888764499********************97767553357788*******************99***99887 PP

  == domain 9  score: 58.7 bits;  conditional E-value: 2.9e-19
       Ank_2   1 LhlAakngnlelvklLl.egadpn..k.ngktaLhyAakngnleivklLleh.....adndgr.tpLhyAarsghleivklLlekgadinlkd 83 
                 Lh+Aa +g+ +++k L+ +ga ++  + ++ t++h+Aa ng+ +++k L+++     a+ dg+ tpLh+Aa +gh +++k L+  ga++ ++d
  KOO22535.1 578 LHFAAIYGQGDAIKALVaAGASVEaqDdEKATPMHWAAGNGHADAIKVLVAAgasvkARTDGKmTPLHWAAGNGHADAIKALVAAGASVVAQD 670
                 8*****99889******9998888743699********************96767665555555*******************99**998876 PP

  == domain 10  score: 58.6 bits;  conditional E-value: 3.1e-19
       Ank_2   1 LhlAakngnlelvklLl.egadpn..k.ngktaLhyAakngnleivklLleh......adndgrtpLhyAarsghleivklLlekgadinlkd 83 
                 Lh+Aa ng+ +++k L+ +ga +   + +++ +Lh Aa +g+ +++k L+ +      +d++ rtpLh+Aa +gh +++k L+  ga+++++d
  KOO22535.1 644 LHWAAGNGHADAIKALVaAGASVVaqDhTKWMPLHSAAAQGHADAIKVLVVKgawveaQDDEKRTPLHIAAIEGHADAIKALVAAGASVEARD 736
                 8*******9********9886654432589********************877887777799*********************99***99887 PP

  == domain 11  score: 59.7 bits;  conditional E-value: 1.4e-19
       Ank_2   1 LhlAakngnlelvklLl.egadpn..k.ngktaLhyAakngnleivklLleh......adndgrtpLhyAarsghleivklLlekgadin 80 
                 Lh+Aa +g+ +++k L+ +ga ++  + n++t+Lh Aa +g+++++k+L +       +d++ +tpLh+Aa +gh +++k L+  ga++ 
  KOO22535.1 710 LHIAAIEGHADAIKALVaAGASVEarDdNKRTPLHSAAGKGHVDAIKALAATgmsveaQDDEKMTPLHIAAIEGHADAIKALVAAGASVA 799
                 8*******99*******9888877653699********************96677676779999*******************9899875 PP

>> Ank_4  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.8   0.0   1.3e-09   2.8e-06       5      55 .]     114     163 ..     111     163 .. 0.96
   2 !   34.5   0.2   9.6e-12   2.1e-08       3      55 .]     183     234 ..     182     234 .. 0.97
   3 !   20.9   0.0   1.7e-07   0.00038      15      55 .]     228     267 ..     226     267 .. 0.94
   4 !   26.0   0.0   4.5e-09     1e-05       2      55 .]     281     333 ..     280     333 .. 0.96
   5 !   35.7   0.0   4.1e-12   9.2e-09       2      55 .]     347     399 ..     346     399 .. 0.97
   6 !   21.0   0.0   1.6e-07   0.00037      15      55 .]     393     432 ..     393     432 .. 0.93
   7 !   37.8   0.1   8.8e-13     2e-09       2      55 .]     413     465 ..     412     465 .. 0.96
   8 !   28.2   0.1     9e-10     2e-06       2      46 ..     446     489 ..     445     494 .. 0.92
   9 !   20.5   0.0   2.3e-07   0.00052      15      55 .]     489     528 ..     487     528 .. 0.94
  10 !   28.4   0.1   7.9e-10   1.8e-06       2      54 ..     509     560 ..     509     561 .. 0.93
  11 !   27.0   0.0   2.2e-09     5e-06       2      55 .]     542     594 ..     541     594 .. 0.95
  12 !   32.8   0.0   3.3e-11   7.5e-08       3      55 .]     576     627 ..     574     627 .. 0.97
  13 !   30.0   0.1   2.4e-10   5.4e-07       2      55 .]     641     693 ..     640     693 .. 0.97
  14 !   42.6   0.1   2.7e-14   6.1e-11       2      54 ..     707     758 ..     706     759 .. 0.97
  15 !   41.5   0.0   6.3e-14   1.4e-10       2      55 .]     740     792 ..     740     792 .. 0.97

  Alignments for each domain:
  == domain 1  score: 27.8 bits;  conditional E-value: 1.3e-09
       Ank_4   5 LhyaaisgrlelvrlLlekgadinaqdnrsGetalhiAakrgnveilklLl 55 
                 +h+aa ++++  ++ L++ ga++ aq +++ +t+lhiAa  g+ +++k L+
  KOO22535.1 114 MHRAARANDVTKIDELVAAGASVEAQ-DDEKRTPLHIAAAQGHADAIKALV 163
                 79************************.*********************996 PP

  == domain 2  score: 34.5 bits;  conditional E-value: 9.6e-12
       Ank_4   3 taLhyaaisgrlelvrlLlekgadinaqdnrsGetalhiAakrgnveilklLl 55 
                 t+Lh aa++g+ ++++ L + ga +  q +++ +t+lh Aa +g+ +++k L+
  KOO22535.1 183 TPLHIAAADGHADAIKALAAAGAAVETQ-DNEKMTPLHWAAGNGHADAIKALV 234
                 89**************************.999******************996 PP

  == domain 3  score: 20.9 bits;  conditional E-value: 1.7e-07
       Ank_4  15 elvrlLlekgadinaqdnrsGetalhiAakrgnveilklLl 55 
                 ++++ L++ ga++ aq ++  +t+lhiA   g+ +++k L+
  KOO22535.1 228 DAIKALVAAGASVEAQ-DDKKRTPLHIAGAQGHADAIKALV 267
                 6899************.999******************996 PP

  == domain 4  score: 26.0 bits;  conditional E-value: 4.5e-09
       Ank_4   2 ltaLhyaaisgrlelvrlLlekgadinaqdnrsGetalhiAakrgnveilklLl 55 
                 +t+Lh aa++gr ++++ L++ ga++ aq ++  +t+l  A  +g+ +++k L+
  KOO22535.1 281 RTPLHGAAAQGRADAIKALVAAGASVEAQ-DDVKRTPLLSASGNGHADAIKALV 333
                 79***************************.888******************996 PP

  == domain 5  score: 35.7 bits;  conditional E-value: 4.1e-12
       Ank_4   2 ltaLhyaaisgrlelvrlLlekgadinaqdnrsGetalhiAakrgnveilklLl 55 
                 +t+Lh+aa  g+ ++++ L++ ga++ aq +++ +t+lh Aa +g+ +++k L+
  KOO22535.1 347 RTPLHSAAGNGHADAIKELVAAGASVEAQ-DDEKRTPLHSAAGNGHADAIKTLV 399
                 79***************************.********************9885 PP

  == domain 6  score: 21.0 bits;  conditional E-value: 1.6e-07
       Ank_4  15 elvrlLlekgadinaqdnrsGetalhiAakrgnveilklLl 55 
                 ++++ L+  ga++ aq +++ +t+lhiAa  g+ +++k L+
  KOO22535.1 393 DAIKTLVTAGASVEAQ-DDEKRTPLHIAAAEGHADAIKALV 432
                 578999988*******.*********************996 PP

  == domain 7  score: 37.8 bits;  conditional E-value: 8.8e-13
       Ank_4   2 ltaLhyaaisgrlelvrlLlekgadinaqdnrsGetalhiAakrgnveilklLl 55 
                 +t+Lh aa++g+ ++++ L++ ga++ aq+n+  +t+lhiAa  g+ +++k L+
  KOO22535.1 413 RTPLHIAAAEGHADAIKALVAAGASVEAQANE-KRTPLHIAAAEGHSDAIKALV 465
                 79***************************766.******************996 PP

  == domain 8  score: 28.2 bits;  conditional E-value: 9e-10
       Ank_4   2 ltaLhyaaisgrlelvrlLlekgadinaqdnrsGetalhiAakrg 46 
                 +t+Lh aa++g+ ++++ L++ ga++ aq +++  t++h Aa + 
  KOO22535.1 446 RTPLHIAAAEGHSDAIKALVAAGASVEAQ-DDEKATPMHWAAGND 489
                 79***************************.9**********9875 PP

  == domain 9  score: 20.5 bits;  conditional E-value: 2.3e-07
       Ank_4  15 elvrlLlekgadinaqdnrsGetalhiAakrgnveilklLl 55 
                 ++++ L++ ga++ aq ++  +t+lh Aa +g+ +++k L+
  KOO22535.1 489 DAIKALVAAGASVEAQ-DDVKRTPLHSAAGNGHADAIKALV 528
                 789*************.888******************996 PP

  == domain 10  score: 28.4 bits;  conditional E-value: 7.9e-10
       Ank_4   2 ltaLhyaaisgrlelvrlLlekgadinaqdnrsGetalhiAakrgnveilklL 54 
                 +t+Lh+aa  g+ ++++ L++ ga++ a   ++ +t+lh Aa +g+ +++  L
  KOO22535.1 509 RTPLHSAAGNGHADAIKALVAAGASVEAL-ADEKRTPLHSAAGNGHADAINVL 560
                 69**************************9.566*************9998777 PP

  == domain 11  score: 27.0 bits;  conditional E-value: 2.2e-09
       Ank_4   2 ltaLhyaaisgrlelvrlLlekgadinaqdnrsGetalhiAakrgnveilklLl 55 
                 +t+Lh+aa  g+ +++  L++ ga++ aq  ++  t+lh+Aa  g+ +++k L+
  KOO22535.1 542 RTPLHSAAGNGHADAINVLVAAGASVEAQ-ADEKATPLHFAAIYGQGDAIKALV 594
                 79***************************.555******************996 PP

  == domain 12  score: 32.8 bits;  conditional E-value: 3.3e-11
       Ank_4   3 taLhyaaisgrlelvrlLlekgadinaqdnrsGetalhiAakrgnveilklLl 55 
                 t+Lh aai+g+ ++++ L++ ga++ aq +++  t++h Aa +g+ +++k L+
  KOO22535.1 576 TPLHFAAIYGQGDAIKALVAAGASVEAQ-DDEKATPMHWAAGNGHADAIKVLV 627
                 89**************************.9********************996 PP

  == domain 13  score: 30.0 bits;  conditional E-value: 2.4e-10
       Ank_4   2 ltaLhyaaisgrlelvrlLlekgadinaqdnrsGetalhiAakrgnveilklLl 55 
                 +t+Lh+aa  g+ ++++ L++ ga++ aq +   + +lh Aa  g+ +++k L+
  KOO22535.1 641 MTPLHWAAGNGHADAIKALVAAGASVVAQ-DHTKWMPLHSAAAQGHADAIKVLV 693
                 89***************************.*********************996 PP

  == domain 14  score: 42.6 bits;  conditional E-value: 2.7e-14
       Ank_4   2 ltaLhyaaisgrlelvrlLlekgadinaqdnrsGetalhiAakrgnveilklL 54 
                 +t+Lh aai+g+ ++++ L++ ga++ a+ +++ +t+lh Aa +g+v+++k L
  KOO22535.1 707 RTPLHIAAIEGHADAIKALVAAGASVEAR-DDNKRTPLHSAAGKGHVDAIKAL 758
                 79***************************.*********************98 PP

  == domain 15  score: 41.5 bits;  conditional E-value: 6.3e-14
       Ank_4   2 ltaLhyaaisgrlelvrlLlekgadinaqdnrsGetalhiAakrgnveilklLl 55 
                 +t+Lh+aa +g++++++ L ++g+++ aq +++ +t+lhiAa  g+ +++k L+
  KOO22535.1 740 RTPLHSAAGKGHVDAIKALAATGMSVEAQ-DDEKMTPLHIAAIEGHADAIKALV 792
                 69***************************.*********************996 PP

>> Ank  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.4   0.0      0.11   2.5e+02       7      32 .]     115     141 ..     114     141 .. 0.77
   2 !   21.8   0.1     8e-08   0.00018       3      31 ..     144     173 ..     142     174 .. 0.93
   3 !   10.4   0.5   0.00033      0.73       4      31 ..     183     211 ..     182     212 .. 0.82
   4 !   25.0   0.0   7.8e-09   1.8e-05       3      32 .]     215     245 ..     213     245 .. 0.95
   5 !   13.7   0.1   2.9e-05     0.066       3      32 .]     248     278 ..     247     278 .. 0.88
   6 !   15.6   0.0   7.3e-06     0.016       3      32 .]     281     311 ..     280     311 .. 0.88
   7 !   11.0   0.1    0.0002      0.45       3      32 .]     314     344 ..     313     344 .. 0.92
   8 !   22.8   0.0   3.7e-08   8.4e-05       3      32 .]     347     377 ..     346     377 .. 0.95
   9 !   21.9   0.0   7.5e-08   0.00017       3      32 .]     380     410 ..     378     410 .. 0.94
  10 !   21.0   0.1   1.5e-07   0.00033       3      30 ..     413     441 ..     411     443 .. 0.92
  11 !   22.9   0.0   3.7e-08   8.3e-05       3      32 .]     446     476 ..     444     476 .. 0.94
  12 !   13.1   0.0   4.6e-05       0.1       4      32 .]     480     506 ..     479     506 .. 0.94
  13 !   19.1   0.2   5.7e-07    0.0013       3      29 ..     509     536 ..     508     539 .. 0.91
  14 !   16.8   0.1     3e-06    0.0066       3      30 ..     542     570 ..     540     572 .. 0.92
  15 !   15.5   0.0   7.8e-06     0.017       4      32 .]     576     605 ..     575     605 .. 0.88
  16 !   14.8   0.1   1.3e-05     0.029       4      31 ..     609     637 ..     608     638 .. 0.93
  17 !   21.3   0.1   1.1e-07   0.00025       3      31 ..     641     670 ..     640     671 .. 0.93
  18 !   13.0   0.0   4.9e-05      0.11       5      32 .]     676     704 ..     674     704 .. 0.94
  19 !   22.9   0.0   3.6e-08     8e-05       3      32 .]     707     737 ..     705     737 .. 0.94
  20 !   12.3   0.0   8.3e-05      0.19       3      31 ..     740     769 ..     738     770 .. 0.87
  21 !   19.8   0.2   3.4e-07   0.00076       3      30 ..     773     801 ..     771     803 .. 0.91

  Alignments for each domain:
  == domain 1  score: 2.4 bits;  conditional E-value: 0.11
                 HHHHHHTTHHHHHH..HH.TTTSTTCBTT CS
         Ank   7 HlAatngkkriikl..LL.hGAnlnaldn 32 
                 H+Aa+ +  +++k   L+  GA++ a+d+
  KOO22535.1 115 HRAARAN--DVTKIdeLVaAGASVEAQDD 141
                 8888666..4666556**88******996 PP

  == domain 2  score: 21.8 bits;  conditional E-value: 8e-08
                 BBHHHHHHHHTTHHHHHHHH.TTTSTTCBT CS
         Ank   3 nTPLHlAatngkkriiklLL.hGAnlnald 31 
                 +TPLH+Aa  g+++ ik+L+  GA++ a++
  KOO22535.1 144 RTPLHIAAAQGHADAIKALVaAGASVEART 173
                 6*******99**********88****9998 PP

  == domain 3  score: 10.4 bits;  conditional E-value: 0.00033
                 BHHHHHHHHTTHHHHHHHH.TTTSTTCBT CS
         Ank   4 TPLHlAatngkkriiklLL.hGAnlnald 31 
                 TPLH+Aa  g+++ ik+L   GA +  +d
  KOO22535.1 183 TPLHIAAADGHADAIKALAaAGAAVETQD 211
                 9*****988999*****986787676666 PP

  == domain 4  score: 25.0 bits;  conditional E-value: 7.8e-09
                 BBHHHHHHHHTTHHHHHHHH.TTTSTTCBTT CS
         Ank   3 nTPLHlAatngkkriiklLL.hGAnlnaldn 32 
                 +TPLH+Aa ng+++ ik+L+  GA++ a+d+
  KOO22535.1 215 MTPLHWAAGNGHADAIKALVaAGASVEAQDD 245
                 8*******************88*******96 PP

  == domain 5  score: 13.7 bits;  conditional E-value: 2.9e-05
                 BBHHHHH.HHHTTHHHHHHHH.TTTSTTCBTT CS
         Ank   3 nTPLHlA.atngkkriiklLL.hGAnlnaldn 32 
                 +TPLH+A a  g+++ ik+L+  GA + a+d+
  KOO22535.1 248 RTPLHIAgA-QGHADAIKALVaAGALVEAQDD 278
                 6*****755.7**********88**8899995 PP

  == domain 6  score: 15.6 bits;  conditional E-value: 7.3e-06
                 BBHHH.HHHHHTTHHHHHHHH.TTTSTTCBTT CS
         Ank   3 nTPLH.lAatngkkriiklLL.hGAnlnaldn 32 
                 +TPLH  Aa  g ++ ik+L+  GA++ a+d+
  KOO22535.1 281 RTPLHgAAA-QGRADAIKALVaAGASVEAQDD 311
                 6****6666.79999******88*******96 PP

  == domain 7  score: 11.0 bits;  conditional E-value: 0.0002
                 BBHHHHHHHHTTHHHHHHHH.TTTSTTCBTT CS
         Ank   3 nTPLHlAatngkkriiklLL.hGAnlnaldn 32 
                 +TPL  A+ ng+++ ik+L+  GA+  a+d+
  KOO22535.1 314 RTPLLSASGNGHADAIKALVaAGASAEAQDD 344
                 6*******************88**9999985 PP

  == domain 8  score: 22.8 bits;  conditional E-value: 3.7e-08
                 BBHHHHHHHHTTHHHHHHHH.TTTSTTCBTT CS
         Ank   3 nTPLHlAatngkkriiklLL.hGAnlnaldn 32 
                 +TPLH Aa ng+++ ik+L+  GA++ a+d+
  KOO22535.1 347 RTPLHSAAGNGHADAIKELVaAGASVEAQDD 377
                 6*******************88*******96 PP

  == domain 9  score: 21.9 bits;  conditional E-value: 7.5e-08
                 BBHHHHHHHHTTHHHHHHHH.TTTSTTCBTT CS
         Ank   3 nTPLHlAatngkkriiklLL.hGAnlnaldn 32 
                 +TPLH Aa ng+++ ik L+  GA++ a+d+
  KOO22535.1 380 RTPLHSAAGNGHADAIKTLVtAGASVEAQDD 410
                 6*******************88*******96 PP

  == domain 10  score: 21.0 bits;  conditional E-value: 1.5e-07
                 BBHHHHHHHHTTHHHHHHHH.TTTSTTCB CS
         Ank   3 nTPLHlAatngkkriiklLL.hGAnlnal 30 
                 +TPLH+Aa +g+++ ik+L+  GA++ a+
  KOO22535.1 413 RTPLHIAAAEGHADAIKALVaAGASVEAQ 441
                 6*******9***********88***9987 PP

  == domain 11  score: 22.9 bits;  conditional E-value: 3.7e-08
                 BBHHHHHHHHTTHHHHHHHH.TTTSTTCBTT CS
         Ank   3 nTPLHlAatngkkriiklLL.hGAnlnaldn 32 
                 +TPLH+Aa +g+ + ik+L+  GA++ a+d+
  KOO22535.1 446 RTPLHIAAAEGHSDAIKALVaAGASVEAQDD 476
                 6*******9***********88*******96 PP

  == domain 12  score: 13.1 bits;  conditional E-value: 4.6e-05
                 BHHHHHHHHTTHHHHHHHH.TTTSTTCBTT CS
         Ank   4 TPLHlAatngkkriiklLL.hGAnlnaldn 32 
                 TP H+Aa n+    ik+L+  GA++ a+d+
  KOO22535.1 480 TPMHWAAGND---AIKALVaAGASVEAQDD 506
                 9******989...******88*******96 PP

  == domain 13  score: 19.1 bits;  conditional E-value: 5.7e-07
                 BBHHHHHHHHTTHHHHHHHH.TTTSTTC CS
         Ank   3 nTPLHlAatngkkriiklLL.hGAnlna 29 
                 +TPLH Aa ng+++ ik+L+  GA++ a
  KOO22535.1 509 RTPLHSAAGNGHADAIKALVaAGASVEA 536
                 6*******************88**9977 PP

  == domain 14  score: 16.8 bits;  conditional E-value: 3e-06
                 BBHHHHHHHHTTHHHHHHHH.TTTSTTCB CS
         Ank   3 nTPLHlAatngkkriiklLL.hGAnlnal 30 
                 +TPLH Aa ng+++ i  L+  GA++ a+
  KOO22535.1 542 RTPLHSAAGNGHADAINVLVaAGASVEAQ 570
                 6*******************88***9886 PP

  == domain 15  score: 15.5 bits;  conditional E-value: 7.8e-06
                 BHHHHHHHHTTHHHHHHHH.TTTSTTCBTT CS
         Ank   4 TPLHlAatngkkriiklLL.hGAnlnaldn 32 
                 TPLH Aa +g+ + ik+L+  GA++ a+d+
  KOO22535.1 576 TPLHFAAIYGQGDAIKALVaAGASVEAQDD 605
                 9***999566666******88*******96 PP

  == domain 16  score: 14.8 bits;  conditional E-value: 1.3e-05
                 BHHHHHHHHTTHHHHHHHH.TTTSTTCBT CS
         Ank   4 TPLHlAatngkkriiklLL.hGAnlnald 31 
                 TP H+Aa ng+++ ik L+  GA++ a++
  KOO22535.1 609 TPMHWAAGNGHADAIKVLVaAGASVKART 637
                 9******************88***98887 PP

  == domain 17  score: 21.3 bits;  conditional E-value: 1.1e-07
                 BBHHHHHHHHTTHHHHHHHH.TTTSTTCBT CS
         Ank   3 nTPLHlAatngkkriiklLL.hGAnlnald 31 
                 +TPLH+Aa ng+++ ik+L+  GA++ a+d
  KOO22535.1 641 MTPLHWAAGNGHADAIKALVaAGASVVAQD 670
                 7*******************88***98887 PP

  == domain 18  score: 13.0 bits;  conditional E-value: 4.9e-05
                 HHHHHHHHTTHHHHHHHH.TTTSTTCBTT CS
         Ank   5 PLHlAatngkkriiklLL.hGAnlnaldn 32 
                 PLH Aa  g+++ ik L+ +GA + a+d+
  KOO22535.1 676 PLHSAAAQGHADAIKVLVvKGAWVEAQDD 704
                 9**99999**********9***9999995 PP

  == domain 19  score: 22.9 bits;  conditional E-value: 3.6e-08
                 BBHHHHHHHHTTHHHHHHHH.TTTSTTCBTT CS
         Ank   3 nTPLHlAatngkkriiklLL.hGAnlnaldn 32 
                 +TPLH+Aa +g+++ ik+L+  GA++ a+d+
  KOO22535.1 707 RTPLHIAAIEGHADAIKALVaAGASVEARDD 737
                 6*******99**********88******996 PP

  == domain 20  score: 12.3 bits;  conditional E-value: 8.3e-05
                 BBHHHHHHHHTTHHHHHHHH.TTTSTTCBT CS
         Ank   3 nTPLHlAatngkkriiklLL.hGAnlnald 31 
                 +TPLH Aa  g+++ ik+L   G ++ a+d
  KOO22535.1 740 RTPLHSAAGKGHVDAIKALAaTGMSVEAQD 769
                 7*******9999******987788888888 PP

  == domain 21  score: 19.8 bits;  conditional E-value: 3.4e-07
                 BBHHHHHHHHTTHHHHHHHH.TTTSTTCB CS
         Ank   3 nTPLHlAatngkkriiklLL.hGAnlnal 30 
                 +TPLH+Aa +g+++ ik+L+  GA+++ +
  KOO22535.1 773 MTPLHIAAIEGHADAIKALVaAGASVAVH 801
                 8*******99**********88**99765 PP

>> Ank_5  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.7   0.0   2.2e-09     5e-06       1      52 [.     129     179 ..     129     181 .. 0.89
   2 !   14.3   0.2   1.7e-05     0.038      16      46 ..     181     211 ..     173     212 .. 0.86
   3 !   37.3   0.1   1.1e-12   2.4e-09       1      56 []     200     254 ..     200     254 .. 0.97
   4 !   18.1   0.0   1.1e-06    0.0025       1      46 [.     233     277 ..     233     279 .. 0.93
   5 !   19.6   0.0   3.6e-07   0.00081       1      47 [.     266     311 ..     266     317 .. 0.90
   6 !   10.7   0.0   0.00024      0.53       1      46 [.     299     343 ..     299     345 .. 0.92
   7 !   19.5   0.1     4e-07   0.00091       1      47 [.     332     377 ..     332     378 .. 0.86
   8 !   31.8   0.0   5.5e-11   1.2e-07       1      56 []     365     419 ..     365     419 .. 0.97
   9 !   29.9   0.1   2.2e-10   4.9e-07       1      56 []     398     452 ..     398     452 .. 0.96
  10 !   25.3   0.1     6e-09   1.3e-05       1      54 [.     431     483 ..     431     485 .. 0.92
  11 !    9.3   0.0   0.00062       1.4       1      28 [.     464     490 ..     464     492 .. 0.91
  12 !   17.7   0.0   1.5e-06    0.0034       1      41 [.     494     533 ..     494     537 .. 0.90
  13 !   19.4   0.1   4.4e-07   0.00099       1      41 [.     527     566 ..     527     570 .. 0.89
  14 !   20.1   0.0   2.7e-07    0.0006       1      47 [.     560     605 ..     560     606 .. 0.92
  15 !   26.9   0.0   1.9e-09   4.1e-06       1      47 [.     593     638 ..     593     640 .. 0.95
  16 !   22.5   0.1   4.7e-08   0.00011       1      41 [.     626     665 ..     626     670 .. 0.91
  17 !   12.3   0.1   7.2e-05      0.16       1      37 [.     659     694 ..     659     697 .. 0.85
  18 !   24.6   0.0   9.9e-09   2.2e-05      11      54 ..     701     744 ..     695     744 .. 0.92
  19 !   16.0   0.0   5.1e-06     0.012       1      35 [.     725     758 ..     725     763 .. 0.91
  20 !   23.8   0.0   1.7e-08   3.9e-05       1      41 [.     758     797 ..     758     803 .. 0.90

  Alignments for each domain:
  == domain 1  score: 26.7 bits;  conditional E-value: 2.2e-09
       Ank_5   1 LlehgpadvnrldgggntpLhvAakygaadvvrlLlargadlnltdsrGlta 52 
                 L+++g a+v ++d ++ tpLh+Aa +g+ad ++ L+a ga+  ++++  +t+
  KOO22535.1 129 LVAAG-ASVEAQDDEKRTPLHIAAAQGHADAIKALVAAGASVEARTDVKRTP 179
                 78999.9********************************9999988644555 PP

  == domain 2  score: 14.3 bits;  conditional E-value: 1.7e-05
       Ank_5  16 gntpLhvAakygaadvvrlLlargadlnltd 46 
                 + tpLh+Aa  g+ad ++ L a ga+  ++d
  KOO22535.1 181 KATPLHIAAADGHADAIKALAAAGAAVETQD 211
                 45*******************9999988877 PP

  == domain 3  score: 37.3 bits;  conditional E-value: 1.1e-12
       Ank_5   1 LlehgpadvnrldgggntpLhvAakygaadvvrlLlargadlnltdsrGltaldlA 56 
                 L+++g a+v ++d++++tpLh+Aa +g+ad ++ L+a ga+  ++d+  +t+l++A
  KOO22535.1 200 LAAAG-AAVETQDNEKMTPLHWAAGNGHADAIKALVAAGASVEAQDDKKRTPLHIA 254
                 78899.9***********************************************99 PP

  == domain 4  score: 18.1 bits;  conditional E-value: 1.1e-06
       Ank_5   1 LlehgpadvnrldgggntpLhvAakygaadvvrlLlargadlnltd 46 
                 L+++g a+v ++d ++ tpLh+A  +g+ad ++ L+a ga   ++d
  KOO22535.1 233 LVAAG-ASVEAQDDKKRTPLHIAGAQGHADAIKALVAAGALVEAQD 277
                 78999.******************************9999988887 PP

  == domain 5  score: 19.6 bits;  conditional E-value: 3.6e-07
       Ank_5   1 LlehgpadvnrldgggntpLhvAakygaadvvrlLlargadlnltds 47 
                 L+++g a v ++d ++ tpLh Aa +g+ad ++ L+a ga+  ++d+
  KOO22535.1 266 LVAAG-ALVEAQDDKKRTPLHGAAAQGRADAIKALVAAGASVEAQDD 311
                 78999.9*********************************9999986 PP

  == domain 6  score: 10.7 bits;  conditional E-value: 0.00024
       Ank_5   1 LlehgpadvnrldgggntpLhvAakygaadvvrlLlargadlnltd 46 
                 L+++g a+v ++d  + tpL  A+ +g+ad ++ L+a ga++ ++d
  KOO22535.1 299 LVAAG-ASVEAQDDVKRTPLLSASGNGHADAIKALVAAGASAEAQD 343
                 78899.99999999999**********************9998887 PP

  == domain 7  score: 19.5 bits;  conditional E-value: 4e-07
       Ank_5   1 LlehgpadvnrldgggntpLhvAakygaadvvrlLlargadlnltds 47 
                 L+++g a+  ++d  + tpLh Aa +g+ad +++L+a ga+  ++d+
  KOO22535.1 332 LVAAG-ASAEAQDDVKRTPLHSAAGNGHADAIKELVAAGASVEAQDD 377
                 67777.77777777777***********************9999886 PP

  == domain 8  score: 31.8 bits;  conditional E-value: 5.5e-11
       Ank_5   1 LlehgpadvnrldgggntpLhvAakygaadvvrlLlargadlnltdsrGltaldlA 56 
                 L+++g a+v ++d ++ tpLh Aa +g+ad ++ L+  ga+  ++d++ +t+l++A
  KOO22535.1 365 LVAAG-ASVEAQDDEKRTPLHSAAGNGHADAIKTLVTAGASVEAQDDEKRTPLHIA 419
                 78999.9************************************************9 PP

  == domain 9  score: 29.9 bits;  conditional E-value: 2.2e-10
       Ank_5   1 LlehgpadvnrldgggntpLhvAakygaadvvrlLlargadlnltdsrGltaldlA 56 
                 L+ +g a+v ++d ++ tpLh+Aa  g+ad ++ L+a ga+  ++ ++ +t+l++A
  KOO22535.1 398 LVTAG-ASVEAQDDEKRTPLHIAAAEGHADAIKALVAAGASVEAQANEKRTPLHIA 452
                 67888.999*********************************************99 PP

  == domain 10  score: 25.3 bits;  conditional E-value: 6e-09
       Ank_5   1 LlehgpadvnrldgggntpLhvAakygaadvvrlLlargadlnltdsrGltald 54 
                 L+++g a+v ++ +++ tpLh+Aa  g++d ++ L+a ga+  ++d++  t+++
  KOO22535.1 431 LVAAG-ASVEAQANEKRTPLHIAAAEGHSDAIKALVAAGASVEAQDDEKATPMH 483
                 78999.89999999999*****************************99999886 PP

  == domain 11  score: 9.3 bits;  conditional E-value: 0.00062
       Ank_5   1 LlehgpadvnrldgggntpLhvAakyga 28 
                 L+++g a+v ++d ++ tp+h+Aa + a
  KOO22535.1 464 LVAAG-ASVEAQDDEKATPMHWAAGNDA 490
                 78999.******************9865 PP

  == domain 12  score: 17.7 bits;  conditional E-value: 1.5e-06
       Ank_5   1 LlehgpadvnrldgggntpLhvAakygaadvvrlLlargad 41 
                 L+++g a+v ++d  + tpLh Aa +g+ad ++ L+a ga+
  KOO22535.1 494 LVAAG-ASVEAQDDVKRTPLHSAAGNGHADAIKALVAAGAS 533
                 78899.99999999999*******************88876 PP

  == domain 13  score: 19.4 bits;  conditional E-value: 4.4e-07
       Ank_5   1 LlehgpadvnrldgggntpLhvAakygaadvvrlLlargad 41 
                 L+++g a+v +l  ++ tpLh Aa +g+ad +++L+a ga+
  KOO22535.1 527 LVAAG-ASVEALADEKRTPLHSAAGNGHADAINVLVAAGAS 566
                 78999.99999999999*******************88886 PP

  == domain 14  score: 20.1 bits;  conditional E-value: 2.7e-07
       Ank_5   1 LlehgpadvnrldgggntpLhvAakygaadvvrlLlargadlnltds 47 
                 L+++g a+v ++  ++ tpLh+Aa yg  d ++ L+a ga+  ++d+
  KOO22535.1 560 LVAAG-ASVEAQADEKATPLHFAAIYGQGDAIKALVAAGASVEAQDD 605
                 78999.99999999999***********************9999886 PP

  == domain 15  score: 26.9 bits;  conditional E-value: 1.9e-09
       Ank_5   1 LlehgpadvnrldgggntpLhvAakygaadvvrlLlargadlnltds 47 
                 L+++g a+v ++d ++ tp+h+Aa +g+ad +++L+a ga+ +++++
  KOO22535.1 593 LVAAG-ASVEAQDDEKATPMHWAAGNGHADAIKVLVAAGASVKARTD 638
                 78999.************************************99985 PP

  == domain 16  score: 22.5 bits;  conditional E-value: 4.7e-08
       Ank_5   1 LlehgpadvnrldgggntpLhvAakygaadvvrlLlargad 41 
                 L+++g a+v ++  g++tpLh+Aa +g+ad ++ L+a ga+
  KOO22535.1 626 LVAAG-ASVKARTDGKMTPLHWAAGNGHADAIKALVAAGAS 665
                 78899.999999************************88876 PP

  == domain 17  score: 12.3 bits;  conditional E-value: 7.2e-05
       Ank_5   1 LlehgpadvnrldgggntpLhvAakygaadvvrlLla 37 
                 L+++g a+v ++d  +  pLh Aa +g+ad +++L+ 
  KOO22535.1 659 LVAAG-ASVVAQDHTKWMPLHSAAAQGHADAIKVLVV 694
                 77888.88888888888*****************994 PP

  == domain 18  score: 24.6 bits;  conditional E-value: 9.9e-09
       Ank_5  11 rldgggntpLhvAakygaadvvrlLlargadlnltdsrGltald 54 
                 ++d ++ tpLh+Aa  g+ad ++ L+a ga+  ++d++ +t+l+
  KOO22535.1 701 AQDDEKRTPLHIAAIEGHADAIKALVAAGASVEARDDNKRTPLH 744
                 6788889*****************************998**995 PP

  == domain 19  score: 16.0 bits;  conditional E-value: 5.1e-06
       Ank_5   1 LlehgpadvnrldgggntpLhvAakygaadvvrlL 35 
                 L+++g a+v ++d ++ tpLh Aa +g+ d ++ L
  KOO22535.1 725 LVAAG-ASVEARDDNKRTPLHSAAGKGHVDAIKAL 758
                 78999.99999999999*************99988 PP

  == domain 20  score: 23.8 bits;  conditional E-value: 1.7e-08
       Ank_5   1 LlehgpadvnrldgggntpLhvAakygaadvvrlLlargad 41 
                 L++ g ++v ++d +++tpLh+Aa  g+ad ++ L+a ga+
  KOO22535.1 758 LAATG-MSVEAQDDEKMTPLHIAAIEGHADAIKALVAAGAS 797
                 66777.9*****************************88876 PP

>> Ank_3  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.1   0.0     0.021        46       6      29 ..     114     136 ..     114     138 .. 0.89
   2 !   17.3   0.0   2.1e-06    0.0047       2      29 ..     143     169 ..     142     171 .. 0.91
   3 !   12.6   0.1   7.1e-05      0.16       4      29 ..     183     207 ..     181     209 .. 0.89
   4 !   18.2   0.0   1.1e-06    0.0025       3      29 ..     215     240 ..     213     242 .. 0.90
   5 !    7.4   0.0    0.0037       8.2       3      27 ..     248     271 ..     246     275 .. 0.88
   6 !    9.7   0.0   0.00066       1.5       3      29 ..     281     306 ..     279     308 .. 0.91
   7 !    7.8   0.0    0.0027       6.1       3      28 ..     314     338 ..     312     341 .. 0.90
   8 !   15.0   0.0   1.2e-05     0.027       3      29 ..     347     372 ..     345     374 .. 0.91
   9 !   13.8   0.0   2.8e-05     0.063       2      29 ..     379     405 ..     378     407 .. 0.90
  10 !   16.1   0.0   5.2e-06     0.012       2      29 ..     412     438 ..     411     440 .. 0.91
  11 !   16.7   0.0   3.3e-06    0.0074       2      29 ..     445     471 ..     444     473 .. 0.91
  12 ?    4.6   0.0     0.029        65       3      23 ..     479     496 ..     477     503 .. 0.73
  13 !   15.8   0.0   6.5e-06     0.015       3      29 ..     509     534 ..     507     536 .. 0.91
  14 !   13.5   0.0   3.6e-05     0.082       2      29 ..     541     567 ..     540     569 .. 0.90
  15 !   14.9   0.0   1.3e-05     0.029       3      29 ..     575     600 ..     573     602 .. 0.90
  16 !   14.8   0.0   1.4e-05     0.032       3      29 ..     608     633 ..     606     635 .. 0.90
  17 !   17.3   0.0   2.1e-06    0.0047       3      29 ..     641     666 ..     639     668 .. 0.91
  18 !    7.8   0.0    0.0026       5.8       3      29 ..     674     699 ..     672     701 .. 0.86
  19 !   16.2   0.0   4.8e-06     0.011       2      29 ..     706     732 ..     705     734 .. 0.91
  20 !   13.0   0.0   5.3e-05      0.12       1      29 [.     738     765 ..     738     767 .. 0.86
  21 !   15.1   0.0   1.1e-05     0.026       3      29 ..     773     798 ..     771     800 .. 0.90

  Alignments for each domain:
  == domain 1  score: 5.1 bits;  conditional E-value: 0.021
       Ank_3   6 LhlAarsgnleivkfLlenkgadv 29 
                 +h+Aar+++++ ++ L+   ga v
  KOO22535.1 114 MHRAARANDVTKIDELVA-AGASV 136
                 69********99*****9.89987 PP

  == domain 2  score: 17.3 bits;  conditional E-value: 2.1e-06
       Ank_3   2 GetpLhlAarsgnleivkfLlenkgadv 29 
                  +tpLh+Aa +g+ + +k+L+   ga v
  KOO22535.1 143 KRTPLHIAAAQGHADAIKALVA-AGASV 169
                 59********************.89987 PP

  == domain 3  score: 12.6 bits;  conditional E-value: 7.1e-05
       Ank_3   4 tpLhlAarsgnleivkfLlenkgadv 29 
                 tpLh+Aa  g+ + +k+L    ga v
  KOO22535.1 183 TPLHIAAADGHADAIKALAA-AGAAV 207
                 9*****************99.78766 PP

  == domain 4  score: 18.2 bits;  conditional E-value: 1.1e-06
       Ank_3   3 etpLhlAarsgnleivkfLlenkgadv 29 
                 +tpLh+Aa +g+ + +k+L+   ga v
  KOO22535.1 215 MTPLHWAAGNGHADAIKALVA-AGASV 240
                 7********************.89987 PP

  == domain 5  score: 7.4 bits;  conditional E-value: 0.0037
       Ank_3   3 etpLhlAarsgnleivkfLlenkga 27 
                 +tpLh+A  +g+ + +k+L+   ga
  KOO22535.1 248 RTPLHIAGAQGHADAIKALVA-AGA 271
                 8******************99.676 PP

  == domain 6  score: 9.7 bits;  conditional E-value: 0.00066
       Ank_3   3 etpLhlAarsgnleivkfLlenkgadv 29 
                 +tpLh Aa +g+ + +k+L+   ga v
  KOO22535.1 281 RTPLHGAAAQGRADAIKALVA-AGASV 306
                 8********************.89987 PP

  == domain 7  score: 7.8 bits;  conditional E-value: 0.0027
       Ank_3   3 etpLhlAarsgnleivkfLlenkgad 28 
                 +tpL  A  +g+ + +k+L+   ga 
  KOO22535.1 314 RTPLLSASGNGHADAIKALVA-AGAS 338
                 8*******************9.7875 PP

  == domain 8  score: 15.0 bits;  conditional E-value: 1.2e-05
       Ank_3   3 etpLhlAarsgnleivkfLlenkgadv 29 
                 +tpLh Aa +g+ + +k L+   ga v
  KOO22535.1 347 RTPLHSAAGNGHADAIKELVA-AGASV 372
                 8********************.89987 PP

  == domain 9  score: 13.8 bits;  conditional E-value: 2.8e-05
       Ank_3   2 GetpLhlAarsgnleivkfLlenkgadv 29 
                  +tpLh Aa +g+ + +k L+   ga v
  KOO22535.1 379 KRTPLHSAAGNGHADAIKTLVT-AGASV 405
                 59*******************9.79887 PP

  == domain 10  score: 16.1 bits;  conditional E-value: 5.2e-06
       Ank_3   2 GetpLhlAarsgnleivkfLlenkgadv 29 
                  +tpLh+Aa  g+ + +k+L+   ga v
  KOO22535.1 412 KRTPLHIAAAEGHADAIKALVA-AGASV 438
                 59********************.89987 PP

  == domain 11  score: 16.7 bits;  conditional E-value: 3.3e-06
       Ank_3   2 GetpLhlAarsgnleivkfLlenkgadv 29 
                  +tpLh+Aa  g+ + +k+L+   ga v
  KOO22535.1 445 KRTPLHIAAAEGHSDAIKALVA-AGASV 471
                 59********************.89987 PP

  == domain 12  score: 4.6 bits;  conditional E-value: 0.029
       Ank_3   3 etpLhlAarsgnleivkfLle 23 
                  tp+h+Aa ++    +k+L+ 
  KOO22535.1 479 ATPMHWAAGNDA---IKALVA 496
                 69*******999...555555 PP

  == domain 13  score: 15.8 bits;  conditional E-value: 6.5e-06
       Ank_3   3 etpLhlAarsgnleivkfLlenkgadv 29 
                 +tpLh Aa +g+ + +k+L+   ga v
  KOO22535.1 509 RTPLHSAAGNGHADAIKALVA-AGASV 534
                 8********************.89987 PP

  == domain 14  score: 13.5 bits;  conditional E-value: 3.6e-05
       Ank_3   2 GetpLhlAarsgnleivkfLlenkgadv 29 
                  +tpLh Aa +g+ + +  L+   ga v
  KOO22535.1 541 KRTPLHSAAGNGHADAINVLVA-AGASV 567
                 59*******************9.89987 PP

  == domain 15  score: 14.9 bits;  conditional E-value: 1.3e-05
       Ank_3   3 etpLhlAarsgnleivkfLlenkgadv 29 
                  tpLh+Aa +g  + +k+L+   ga v
  KOO22535.1 575 ATPLHFAAIYGQGDAIKALVA-AGASV 600
                 69*******************.89987 PP

  == domain 16  score: 14.8 bits;  conditional E-value: 1.4e-05
       Ank_3   3 etpLhlAarsgnleivkfLlenkgadv 29 
                  tp+h+Aa +g+ + +k L+   ga v
  KOO22535.1 608 ATPMHWAAGNGHADAIKVLVA-AGASV 633
                 69******************9.89887 PP

  == domain 17  score: 17.3 bits;  conditional E-value: 2.1e-06
       Ank_3   3 etpLhlAarsgnleivkfLlenkgadv 29 
                 +tpLh+Aa +g+ + +k+L+   ga v
  KOO22535.1 641 MTPLHWAAGNGHADAIKALVA-AGASV 666
                 7*******************9.78876 PP

  == domain 18  score: 7.8 bits;  conditional E-value: 0.0026
       Ank_3   3 etpLhlAarsgnleivkfLlenkgadv 29 
                 + pLh Aa +g+ + +k L+  kga v
  KOO22535.1 674 WMPLHSAAAQGHADAIKVLVV-KGAWV 699
                 679****************98.77765 PP

  == domain 19  score: 16.2 bits;  conditional E-value: 4.8e-06
       Ank_3   2 GetpLhlAarsgnleivkfLlenkgadv 29 
                  +tpLh+Aa  g+ + +k+L+   ga v
  KOO22535.1 706 KRTPLHIAAIEGHADAIKALVA-AGASV 732
                 59********************.89987 PP

  == domain 20  score: 13.0 bits;  conditional E-value: 5.3e-05
       Ank_3   1 nGetpLhlAarsgnleivkfLlenkgadv 29 
                 n +tpLh Aa  g+++ +k+L    g+ v
  KOO22535.1 738 NKRTPLHSAAGKGHVDAIKALAA-TGMSV 765
                 579******************88.67665 PP

  == domain 21  score: 15.1 bits;  conditional E-value: 1.1e-05
       Ank_3   3 etpLhlAarsgnleivkfLlenkgadv 29 
                 +tpLh+Aa  g+ + +k+L+   ga v
  KOO22535.1 773 MTPLHIAAIEGHADAIKALVA-AGASV 798
                 7********************.89887 PP

>> FAD_binding_5  FAD binding domain in molybdopterin dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.2   0.0   0.00043      0.95      80     140 ..      53     177 ..      43     186 .. 0.78
   2 !    5.7   0.3     0.005        11     112     141 ..     187     216 ..     185     222 .. 0.86
   3 ?    3.9   0.1     0.018        41     117     141 ..     225     249 ..     219     254 .. 0.82
   4 ?    4.2   0.1     0.014        31     112     140 ..     253     281 ..     252     287 .. 0.86
   5 ?    2.8   0.1      0.04        89     114     137 ..     288     311 ..     285     320 .. 0.82
   6 ?    4.4   3.7     0.012        28     101     142 ..     394     448 ..     317     453 .. 0.78
   7 !    7.2   0.1    0.0017       3.7     112     142 ..     451     481 ..     449     486 .. 0.85
   8 ?    0.2   0.1      0.24   5.3e+02     119     138 ..     488     507 ..     480     516 .. 0.80
   9 ?    2.7   1.0     0.041        91     116     141 ..     551     576 ..     514     586 .. 0.69
  10 ?    3.2   0.1     0.029        65     118     142 ..     586     610 ..     575     615 .. 0.84
  11 ?    2.7   0.8      0.04        89     116     135 ..     650     669 ..     612     688 .. 0.63
  12 ?   -0.4   0.0      0.38   8.6e+02     114     143 ..     681     710 ..     678     715 .. 0.83
  13 ?    3.5   0.1     0.023        53     117     140 ..     717     740 ..     710     748 .. 0.80
  14 ?    4.1   0.3     0.015        35     116     145 ..     782     811 ..     744     819 .. 0.87

  Alignments for each domain:
  == domain 1  score: 9.2 bits;  conditional E-value: 0.00043
                    HHHHHHHHHHSH.HHHHTSS-HHHHHH-B.HHHHH............................................................. CS
  FAD_binding_5  80 ealvrerypals.ealekiAspqiRnvaT.iGGNl............................................................. 112
                    ++ ++er+p ++  + ++iA++q + ++T +GG                                                               
     KOO22535.1  53 KPKFAERFPGYAgWLRRQIAHQQAQALGTaLGGRAagksssapsragavpsagavpsastdmhraarandvtkidelvaagasveaqddekrtplh 148
                    556666666666334467888888888885577778888888888888888888888888888888888888888888888888888888888888 PP

                    .HHT-TT-SSHHHHHHTTEEEEEEESSEE CS
  FAD_binding_5 113 .ataspisDlapaLlaldAevelrsaege 140
                     a a+ ++D + aL+a++A+ve r+  ++
     KOO22535.1 149 iAAAQGHADAIKALVAAGASVEARTDVKR 177
                    899999****************9986655 PP

  == domain 2  score: 5.7 bits;  conditional E-value: 0.005
                    HHHT-TT-SSHHHHHHTTEEEEEEESSEEE CS
  FAD_binding_5 112 lataspisDlapaLlaldAevelrsaeger 141
                    +a a+ ++D + aL+a++A ve+++ e+ +
     KOO22535.1 187 IAAADGHADAIKALAAAGAAVETQDNEKMT 216
                    7899999****************9888755 PP

  == domain 3  score: 3.9 bits;  conditional E-value: 0.018
                    TT-SSHHHHHHTTEEEEEEESSEEE CS
  FAD_binding_5 117 pisDlapaLlaldAevelrsaeger 141
                     ++D + aL+a++A+ve ++ ++++
     KOO22535.1 225 GHADAIKALVAAGASVEAQDDKKRT 249
                    569***************9887765 PP

  == domain 4  score: 4.2 bits;  conditional E-value: 0.014
                    HHHT-TT-SSHHHHHHTTEEEEEEESSEE CS
  FAD_binding_5 112 lataspisDlapaLlaldAevelrsaege 140
                    +a a+ ++D + aL+a++A ve ++ +++
     KOO22535.1 253 IAGAQGHADAIKALVAAGALVEAQDDKKR 281
                    7889999****************977665 PP

  == domain 5  score: 2.8 bits;  conditional E-value: 0.04
                    HT-TT-SSHHHHHHTTEEEEEEES CS
  FAD_binding_5 114 taspisDlapaLlaldAevelrsa 137
                     a+  +D + aL+a++A+ve ++ 
     KOO22535.1 288 AAQGRADAIKALVAAGASVEAQDD 311
                    577789**************9864 PP

  == domain 6  score: 4.4 bits;  conditional E-value: 0.012
                    HHHHH-BHHHHH.............HHT-TT-SSHHHHHHTTEEEEEEESSEEEE CS
  FAD_binding_5 101 qiRnvaTiGGNl.............ataspisDlapaLlaldAevelrsaegere 142
                    +i+ + T G ++             a a+ ++D + aL+a++A+ve +  e+++ 
     KOO22535.1 394 AIKTLVTAGASVeaqddekrtplhiAAAEGHADAIKALVAAGASVEAQANEKRTP 448
                    5555555555556666666666665889999****************98877655 PP

  == domain 7  score: 7.2 bits;  conditional E-value: 0.0017
                    HHHT-TT-SSHHHHHHTTEEEEEEESSEEEE CS
  FAD_binding_5 112 lataspisDlapaLlaldAevelrsaegere 142
                    +a a+ +sD + aL+a++A+ve ++ e+ + 
     KOO22535.1 451 IAAAEGHSDAIKALVAAGASVEAQDDEKATP 481
                    7889999****************98887655 PP

  == domain 8  score: 0.2 bits;  conditional E-value: 0.24
                    -SSHHHHHHTTEEEEEEESS CS
  FAD_binding_5 119 sDlapaLlaldAevelrsae 138
                     D + aL+a++A+ve ++  
     KOO22535.1 488 NDAIKALVAAGASVEAQDDV 507
                    69999**********98654 PP

  == domain 9  score: 2.7 bits;  conditional E-value: 0.041
                    -TT-SSHHHHHHTTEEEEEEESSEEE CS
  FAD_binding_5 116 spisDlapaLlaldAevelrsaeger 141
                    + ++D + +L+a++A+ve +  e+ +
     KOO22535.1 551 NGHADAINVLVAAGASVEAQADEKAT 576
                    34577888888888888877666655 PP

  == domain 10  score: 3.2 bits;  conditional E-value: 0.029
                    T-SSHHHHHHTTEEEEEEESSEEEE CS
  FAD_binding_5 118 isDlapaLlaldAevelrsaegere 142
                    ++D + aL+a++A+ve ++ e+ + 
     KOO22535.1 586 QGDAIKALVAAGASVEAQDDEKATP 610
                    49***************98887655 PP

  == domain 11  score: 2.7 bits;  conditional E-value: 0.04
                    -TT-SSHHHHHHTTEEEEEE CS
  FAD_binding_5 116 spisDlapaLlaldAevelr 135
                    + ++D + aL+a++A+v+ +
     KOO22535.1 650 NGHADAIKALVAAGASVVAQ 669
                    33466666666666666665 PP

  == domain 12  score: -0.4 bits;  conditional E-value: 0.38
                    HT-TT-SSHHHHHHTTEEEEEEESSEEEEE CS
  FAD_binding_5 114 taspisDlapaLlaldAevelrsaegerev 143
                     a+ ++D + +L++ +A ve ++ e+++ +
     KOO22535.1 681 AAQGHADAIKVLVVKGAWVEAQDDEKRTPL 710
                    578889***************988876655 PP

  == domain 13  score: 3.5 bits;  conditional E-value: 0.023
                    TT-SSHHHHHHTTEEEEEEESSEE CS
  FAD_binding_5 117 pisDlapaLlaldAevelrsaege 140
                     ++D + aL+a++A+ve r+ +++
     KOO22535.1 717 GHADAIKALVAAGASVEARDDNKR 740
                    569***************976665 PP

  == domain 14  score: 4.1 bits;  conditional E-value: 0.015
                    -TT-SSHHHHHHTTEEEEEEESSEEEEEEC CS
  FAD_binding_5 116 spisDlapaLlaldAevelrsaegerevpl 145
                    + ++D + aL+a++A+v +++a + + vp 
     KOO22535.1 782 EGHADAIKALVAAGASVAVHKAINAECVPT 811
                    4469****************9999998885 PP

>> UBA  UBA/TS-N domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.6   0.0     0.059   1.3e+02      17      32 ..     156     171 ..     154     171 .. 0.89
   2 ?    0.2   0.1      0.33   7.4e+02      17      31 ..     194     208 ..     192     209 .. 0.84
   3 ?    2.6   0.0     0.059   1.3e+02      17      32 ..     227     242 ..     225     242 .. 0.89
   4 ?   -1.5   0.1       1.1   2.5e+03      17      27 ..     260     270 ..     259     271 .. 0.85
   5 ?    4.1   0.1     0.019        43      16      32 ..     292     308 ..     291     308 .. 0.91
   6 ?    1.0   0.1      0.18   4.1e+02      17      31 ..     326     340 ..     324     341 .. 0.84
   7 ?    2.6   0.0     0.059   1.3e+02      17      32 ..     425     440 ..     423     440 .. 0.89
   8 ?    2.9   0.0     0.047     1e+02      17      32 ..     458     473 ..     456     473 .. 0.89
   9 ?    2.4   0.1     0.066   1.5e+02      17      32 ..     488     503 ..     487     503 .. 0.90
  10 ?    2.6   0.0     0.059   1.3e+02      17      32 ..     521     536 ..     519     536 .. 0.89
  11 ?    1.4   0.0      0.14     3e+02      19      32 ..     589     602 ..     586     602 .. 0.90
  12 ?    0.0   0.1      0.37   8.4e+02      17      30 ..     653     666 ..     651     668 .. 0.81
  13 ?    2.6   0.0     0.059   1.3e+02      17      32 ..     719     734 ..     717     734 .. 0.89
  14 ?    3.4   0.0     0.034        75      18      32 ..     753     767 ..     751     767 .. 0.91
  15 ?    0.4   0.1      0.28   6.4e+02      17      28 ..     785     796 ..     783     805 .. 0.75

  Alignments for each domain:
  == domain 1  score: 2.6 bits;  conditional E-value: 0.059
                 HHHHHHHHHTTTSHHH CS
         UBA  17 eevveALratgnNeEr 32 
                 +++++AL+a+g ++E+
  KOO22535.1 156 ADAIKALVAAGASVEA 171
                 689********99996 PP

  == domain 2  score: 0.2 bits;  conditional E-value: 0.33
                 HHHHHHHHHTTTSHH CS
         UBA  17 eevveALratgnNeE 31 
                 +++++AL a+g  +E
  KOO22535.1 194 ADAIKALAAAGAAVE 208
                 689*******98887 PP

  == domain 3  score: 2.6 bits;  conditional E-value: 0.059
                 HHHHHHHHHTTTSHHH CS
         UBA  17 eevveALratgnNeEr 32 
                 +++++AL+a+g ++E+
  KOO22535.1 227 ADAIKALVAAGASVEA 242
                 689********99996 PP

  == domain 4  score: -1.5 bits;  conditional E-value: 1.1
                 HHHHHHHHHTT CS
         UBA  17 eevveALratg 27 
                 +++++AL+a+g
  KOO22535.1 260 ADAIKALVAAG 270
                 5799*****97 PP

  == domain 5  score: 4.1 bits;  conditional E-value: 0.019
                 HHHHHHHHHHTTTSHHH CS
         UBA  16 reevveALratgnNeEr 32 
                 r+++++AL+a+g ++E+
  KOO22535.1 292 RADAIKALVAAGASVEA 308
                 899*********99996 PP

  == domain 6  score: 1.0 bits;  conditional E-value: 0.18
                 HHHHHHHHHTTTSHH CS
         UBA  17 eevveALratgnNeE 31 
                 +++++AL+a+g + E
  KOO22535.1 326 ADAIKALVAAGASAE 340
                 689*******98877 PP

  == domain 7  score: 2.6 bits;  conditional E-value: 0.059
                 HHHHHHHHHTTTSHHH CS
         UBA  17 eevveALratgnNeEr 32 
                 +++++AL+a+g ++E+
  KOO22535.1 425 ADAIKALVAAGASVEA 440
                 689********99996 PP

  == domain 8  score: 2.9 bits;  conditional E-value: 0.047
                 HHHHHHHHHTTTSHHH CS
         UBA  17 eevveALratgnNeEr 32 
                 +++++AL+a+g ++E+
  KOO22535.1 458 SDAIKALVAAGASVEA 473
                 789********99996 PP

  == domain 9  score: 2.4 bits;  conditional E-value: 0.066
                 HHHHHHHHHTTTSHHH CS
         UBA  17 eevveALratgnNeEr 32 
                 +++++AL+a+g ++E+
  KOO22535.1 488 NDAIKALVAAGASVEA 503
                 589********99996 PP

  == domain 10  score: 2.6 bits;  conditional E-value: 0.059
                 HHHHHHHHHTTTSHHH CS
         UBA  17 eevveALratgnNeEr 32 
                 +++++AL+a+g ++E+
  KOO22535.1 521 ADAIKALVAAGASVEA 536
                 689********99996 PP

  == domain 11  score: 1.4 bits;  conditional E-value: 0.14
                 HHHHHHHTTTSHHH CS
         UBA  19 vveALratgnNeEr 32 
                 +++AL+a+g ++E+
  KOO22535.1 589 AIKALVAAGASVEA 602
                 89*******99996 PP

  == domain 12  score: 0.0 bits;  conditional E-value: 0.37
                 HHHHHHHHHTTTSH CS
         UBA  17 eevveALratgnNe 30 
                 +++++AL+a+g ++
  KOO22535.1 653 ADAIKALVAAGASV 666
                 689******99665 PP

  == domain 13  score: 2.6 bits;  conditional E-value: 0.059
                 HHHHHHHHHTTTSHHH CS
         UBA  17 eevveALratgnNeEr 32 
                 +++++AL+a+g ++E+
  KOO22535.1 719 ADAIKALVAAGASVEA 734
                 689********99996 PP

  == domain 14  score: 3.4 bits;  conditional E-value: 0.034
                 HHHHHHHHTTTSHHH CS
         UBA  18 evveALratgnNeEr 32 
                 ++++AL atg ++E+
  KOO22535.1 753 DAIKALAATGMSVEA 767
                 699**********96 PP

  == domain 15  score: 0.4 bits;  conditional E-value: 0.28
                 HHHHHHHHHTTT CS
         UBA  17 eevveALratgn 28 
                 +++++AL+a+g 
  KOO22535.1 785 ADAIKALVAAGA 796
                 689*******97 PP

>> Ribosomal_S11  Ribosomal protein S11
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.9   4.7      0.13     3e+02      59     101 ..     121     181 ..      76     187 .. 0.66
   2 ?    2.6   3.8      0.08   1.8e+02      44     101 ..     150     181 ..     129     219 .. 0.47
   3 ?    4.1   1.7     0.027        60      46      96 ..     200     247 ..     186     259 .. 0.68
   4 ?    7.4   5.4    0.0025       5.6      27     101 ..     267     351 ..     249     358 .. 0.66
   5 ?    0.7   0.1      0.31     7e+02      70      99 ..     353     382 ..     350     392 .. 0.82
   6 ?    1.0   0.1      0.25   5.6e+02      69      95 ..     385     411 ..     362     420 .. 0.81
   7 ?    3.4   3.0     0.045     1e+02      28      99 ..     400     481 ..     388     487 .. 0.64
   8 ?    8.9   5.2   0.00084       1.9      11     100 ..     446     545 ..     436     553 .. 0.64
   9 ?    5.8   2.5    0.0079        18      24      95 ..     559     639 ..     551     646 .. 0.75
  10 ?    5.3   4.7     0.011        26      21      99 ..     587     676 ..     585     686 .. 0.69
  11 ?    1.6   0.5      0.16   3.5e+02      28      95 ..     661     738 ..     655     745 .. 0.62
  12 ?    7.0   0.9    0.0034       7.7      44      97 ..     713     775 ..     687     784 .. 0.64
  13 ?    4.8   2.2     0.016        36      69      97 ..     745     775 ..     710     816 .. 0.79

  Alignments for each domain:
  == domain 1  score: 1.9 bits;  conditional E-value: 0.13
  Ribosomal_S11  59 kGikavevkvkg..................pGpGreaalralaraGlkigriedvtPiPhd 101
                    + +++++  v +                  +  G   a++al +aG  + + +dv  +P +
     KOO22535.1 121 NDVTKIDELVAAgasveaqddekrtplhiaAAQGHADAIKALVAAGASVEARTDVKRTPLK 181
                    444444444444444444556666666665889999*******************888865 PP

  == domain 2  score: 2.6 bits;  conditional E-value: 0.08
  Ribosomal_S11  44 aaqlaaekaaekvldkGikavevkvkgpGpGreaalralaraGlkigriedvtPiPhd 101
                    aa                            G   a++al +aG  + + +dv  +P +
     KOO22535.1 150 AAA--------------------------QGHADAIKALVAAGASVEARTDVKRTPLK 181
                    333..........................34444444444444444444444333332 PP

  == domain 3  score: 4.1 bits;  conditional E-value: 0.027
  Ribosomal_S11  46 qlaaekaaekvldkGikavevkvkgpGpGreaalralaraGlkigriedvt 96 
                      aa +a+e+  ++ ++ ++    ++G G   a++al +aG  + + +d  
     KOO22535.1 200 LAAAGAAVETQDNEKMTPLH---WAAGNGHADAIKALVAAGASVEAQDDKK 247
                    44444444444444455444...36999************99998877754 PP

  == domain 4  score: 7.4 bits;  conditional E-value: 0.0025
  Ribosomal_S11  27 ksaGglg.vkasrkssPy..aaqlaaekaaekvldkGik.avevkvkg......pGpGreaalralaraGlkigriedvtPiPhd 101
                     +aG+l+  + ++k +P   aa +   +a+++++  G + +++  vk       +G G   a++al +aG    + +dv  +P  
     KOO22535.1 267 VAAGALVeAQDDKKRTPLhgAAAQGRADAIKALVAAGASvEAQDDVKRtpllsaSGNGHADAIKALVAAGASAEAQDDVKRTPLH 351
                    3566655145567999984555555667788888877542233334335666669***********************9888865 PP

  == domain 5  score: 0.7 bits;  conditional E-value: 0.31
  Ribosomal_S11  70 gpGpGreaalralaraGlkigriedvtPiP 99 
                    ++G G   a++ l +aG  + + +d   +P
     KOO22535.1 353 AAGNGHADAIKELVAAGASVEAQDDEKRTP 382
                    79***************9999888865555 PP

  == domain 6  score: 1.0 bits;  conditional E-value: 0.25
  Ribosomal_S11  69 kgpGpGreaalralaraGlkigriedv 95 
                    +++G G   a+++l  aG  + + +d 
     KOO22535.1 385 SAAGNGHADAIKTLVTAGASVEAQDDE 411
                    4699**************999887765 PP

  == domain 7  score: 3.4 bits;  conditional E-value: 0.045
  Ribosomal_S11  28 saGg.lgvkasrkssPy..aaqlaaekaaekvldkGikavevkvkg..........pGpGreaalralaraGlkigriedvtPiP 99 
                    +aG+ +  + + k +P   aa     +a+++++  G   + v+ ++          +  G   a++al +aG  + + +d   +P
     KOO22535.1 400 TAGAsVEAQDDEKRTPLhiAAAEGHADAIKALVAAG---ASVEAQAnekrtplhiaAAEGHSDAIKALVAAGASVEAQDDEKATP 481
                    344404445555888862244444445555555555...44444445567888888999*************9999887754443 PP

  == domain 8  score: 8.9 bits;  conditional E-value: 0.00084
  Ribosomal_S11  11 ntiititdlkGaevlvk...saGglg.vkasrkssPyaaqlaaekaaekvldkGik.avevkvkg......pGpGreaalralaraGlkigriedv 95 
                     t ++i+  +G+  ++k   +aG+++  + + k++P     a ++a+++++  G + +++  vk       +G G   a++al +aG  + ++ d 
     KOO22535.1 446 RTPLHIAAAEGHSDAIKalvAAGASVeAQDDEKATPMH-WAAGNDAIKALVAAGASvEAQDDVKRtplhsaAGNGHADAIKALVAAGASVEALADE 540
                    56667777776543332111455544144455999964.45667777777777754223334444467777*********************9997 PP

  Ribosomal_S11  96 tPiPh 100
                      +P 
     KOO22535.1 541 KRTPL 545
                    66664 PP

  == domain 9  score: 5.8 bits;  conditional E-value: 0.0079
  Ribosomal_S11  24 vlvksaGglgvkasrkssP..yaaqlaaekaaekvldkGik.avevkvkg......pGpGreaalralaraGlkigriedv 95 
                    vlv++  ++  +a+ k++P  +aa     +a+++++  G + +++   k+      +G G   a++ l +aG  + + +d 
     KOO22535.1 559 VLVAAGASVEAQADEKATPlhFAAIYGQGDAIKALVAAGASvEAQDDEKAtpmhwaAGNGHADAIKVLVAAGASVKARTDG 639
                    555555667788889***9889****999****99999964122222333778888****************999887774 PP

  == domain 10  score: 5.3 bits;  conditional E-value: 0.011
  Ribosomal_S11  21 GaevlvksaGglgv..kasrkssP..yaaqlaaekaaekvldkGikavevkvkg........pGpGreaalralaraGlkigriedvtPiP 99 
                    G ++ +  a g  v  + + k++P  +aa     +a++ ++  G + v+ +  g        +G G   a++al +aG  + + +    +P
     KOO22535.1 587 GDAIKALVAAGASVeaQDDEKATPmhWAAGNGHADAIKVLVAAGAS-VKARTDGkmtplhwaAGNGHADAIKALVAAGASVVAQDHTKWMP 676
                    5555544444333300445599996668888888899998888853.444444489999999****************9987655555556 PP

  == domain 11  score: 1.6 bits;  conditional E-value: 0.16
  Ribosomal_S11  28 saGglgvkasr.kssPyaaqlaaekaaekvldkGikavevkvkg..........pGpGreaalralaraGlkigriedv 95 
                    +aG+++v +++ k  P  +  aa+  a++++   +k + v+ +           +  G   a++al +aG  + + +d 
     KOO22535.1 661 AAGASVVAQDHtKWMPLHS-AAAQGHADAIKVLVVKGAWVEAQDdekrtplhiaAIEGHADAIKALVAAGASVEARDDN 738
                    5777777777767777532.233444444444444444444444455557777677899999*******9999887775 PP

  == domain 12  score: 7.0 bits;  conditional E-value: 0.0034
  Ribosomal_S11  44 aaqlaaekaaekvldkGikavevkvkg..........pGpGreaalralaraGlkigried..vtP 97 
                    aa     +a+++++  G +   v+ +           +G G   a++ala++G+ + + +d  +tP
     KOO22535.1 713 AAIEGHADAIKALVAAGAS---VEARDdnkrtplhsaAGKGHVDAIKALAATGMSVEAQDDekMTP 775
                    4555555555555554422...2222222344666669*****************99887733444 PP

  == domain 13  score: 4.8 bits;  conditional E-value: 0.016
  Ribosomal_S11  69 kgpGpGreaalralaraGlkigried..vtP 97 
                    +++G G   a++ala++G+ + + +d  +tP
     KOO22535.1 745 SAAGKGHVDAIKALAATGMSVEAQDDekMTP 775
                    3599999999999999999998877623444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (826 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       492  (0.0274416); expected 358.6 (0.02)
Passed bias filter:                      197  (0.0109878); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                        15  (0.000836633); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.99u 0.28s 00:00:01.27 Elapsed: 00:00:00.46
# Mc/sec: 5409.50
//
Query:       KOO22536.1  [L=1108]
Description: hypothetical protein Ctob_006009 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00057   20.1   0.0        1.7    8.8   0.0    4.1  5  p25-alpha  p25-alpha
  ------ inclusion threshold ------
       0.67    9.6   4.0         13    5.6   0.0    4.3  4  EF-hand_1  EF hand


Domain annotation for each model (and alignments):
>> p25-alpha  p25-alpha
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.1   0.0       1.7   1.6e+04      56      81 ..      42      67 ..      39      87 .. 0.74
   2 ?    1.6   0.0      0.03   2.7e+02       3      53 ..     151     205 ..     149     219 .. 0.78
   3 ?   -0.8   0.0      0.17   1.5e+03       2      73 ..     503     578 ..     502     589 .. 0.75
   4 !    3.3   0.0    0.0092        82      53      94 ..     718     759 ..     697     786 .. 0.74
   5 !    8.8   0.0   0.00019       1.7       4      80 ..     840     919 ..     838     942 .. 0.85

  Alignments for each domain:
  == domain 1  score: -4.1 bits;  conditional E-value: 1.7
   p25-alpha 56 arkitfeqfkealeelaekkfkkkkk 81
                a+ +tf++f  +l  +   k+++  +
  KOO22536.1 42 AQMMTFDEFVVCLGLCGHIKYEEITE 67
                67789999999999888887755444 PP

  == domain 2  score: 1.6 bits;  conditional E-value: 0.03
   p25-alpha   3 aFkaFakfg....dtkktgkemdnknfsKlckDckiidkkvtstdvDiiFsKvka 53 
                 +F++++k g    ++++++++m+++++  l+ Dc+i ++++   +v  iF+   +
  KOO22536.1 151 IFTQYSKVGtagsSSAHAAETMQQSELINLALDCGIASEAFPMARVIGIFEHADQ 205
                 678888877555455668999***************9999888887777776655 PP

  == domain 3  score: -0.8 bits;  conditional E-value: 0.17
   p25-alpha   2 eaFkaFakfg......dtkktgkemdnknfsKlckDckiidkkvtstdvDiiFsKvkaksarkitfeqfkealeelae 73 
                 ++F+++ak         ++k  +++++++++ l++D ++ + ++   +v +i+++++   +  +t+  f + l +la 
  KOO22536.1 503 DVFYSYAKAVgagkgvASAKLDETLQQNELASLVRDTGLATDTFPLARVNTIYAQIT--PDDALTLPGFVTLLVMLAV 578
                 577777776544444445556778889999999*****9999999999999999999..4556677777777777665 PP

  == domain 4  score: 3.3 bits;  conditional E-value: 0.0092
   p25-alpha  53 aksarkitfeqfkealeelaekkfkkkkkeeelelieklieg 94 
                 ++++++i+fe+f  +l  + + k+++  +++++ ++ +l++ 
  KOO22536.1 718 DEGNSTIDFEEFLLCLALCGAVKYQEVTEMSNEVKVATLVAT 759
                 56789*****************99888888777566666554 PP

  == domain 5  score: 8.8 bits;  conditional E-value: 0.00019
   p25-alpha   4 FkaFakfgdtkktgkemdnknfsKlckDckiidkkvtstdvDiiFsKvk...aksarkitfeqfkealeelaekkfkkkk 80 
                 +++++  + + +++++m++ +++ l+ Dc++ +k +  t++  +F  v+   + +++++++++f e ++ la  + + k+
  KOO22536.1 840 YYSYCGDEAGGAAASTMQQTELVDLALDCGLATKDFPMTRIVSLFDVVNrsrGATDSDLELHEFLELMTALAFARANPKF 919
                 6789999999999********************************98874335667889999999999888877666555 PP

>> EF-hand_1  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.0      0.22     2e+03      17      26 ..      45      54 ..      44      56 .. 0.84
   2 ?    1.6   0.0     0.027   2.4e+02      13      27 ..     227     241 ..     227     243 .. 0.88
   3 ?    5.6   0.0    0.0015        13      13      27 ..     720     734 ..     718     736 .. 0.86
   4 ?   -1.0   0.1      0.18   1.7e+03      17      29 .]     898     910 ..     895     910 .. 0.83

  Alignments for each domain:
  == domain 1  score: -1.2 bits;  conditional E-value: 0.22
                EEHHHHHHHH CS
   EF-hand_1 17 IdfeEfkell 26
                ++f+Ef+ +l
  KOO22536.1 45 MTFDEFVVCL 54
                69****9887 PP

  == domain 2  score: 1.6 bits;  conditional E-value: 0.027
                 SSSEEEHHHHHHHHH CS
   EF-hand_1  13 gdGkIdfeEfkellk 27 
                 gdG +++ Ef++++ 
  KOO22536.1 227 GDGNLELHEFLTVVV 241
                 8*********99876 PP

  == domain 3  score: 5.6 bits;  conditional E-value: 0.0015
                 SSSEEEHHHHHHHHH CS
   EF-hand_1  13 gdGkIdfeEfkellk 27 
                 g+ +IdfeEf+ +l+
  KOO22536.1 720 GNSTIDFEEFLLCLA 734
                 8899******99986 PP

  == domain 4  score: -1.0 bits;  conditional E-value: 0.18
                 EEHHHHHHHHHHH CS
   EF-hand_1  17 IdfeEfkellkkl 29 
                 +++ Ef+el+++l
  KOO22536.1 898 LELHEFLELMTAL 910
                 5789******975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1108 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       331  (0.0184617); expected 358.6 (0.02)
Passed bias filter:                      305  (0.0170115); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.70u 0.25s 00:00:00.95 Elapsed: 00:00:00.43
# Mc/sec: 7752.59
//
Query:       KOO22537.1  [L=359]
Description: hypothetical protein Ctob_006020 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.13   11.9   0.0       0.31   10.7   0.0    1.5  1  zf-MYST   MYST family zinc finger domain


Domain annotation for each model (and alignments):
>> zf-MYST  MYST family zinc finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   1.7e-05      0.31      26      45 ..      96     115 ..      93     119 .. 0.85

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 1.7e-05
     zf-MYST  26 lankekLyvCefClkYmksa 45 
                 l+++ +LyvC  Cl + ks 
  KOO22537.1  96 LSDVHNLYVCPICLLWLKSL 115
                 57889*********998875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (359 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       379  (0.0211389); expected 358.6 (0.02)
Passed bias filter:                      308  (0.0171789); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.25s 00:00:00.69 Elapsed: 00:00:00.41
# Mc/sec: 2651.58
//
Query:       KOO22538.1  [L=183]
Description: hypothetical protein Ctob_006021 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      2e-12   46.0   0.0    5.7e-05   22.7   0.0    2.7  3  EF-hand_6  EF-hand domain
    2.6e-12   45.4   0.0    4.6e-05   22.7   0.0    2.3  2  EF-hand_1  EF hand
    3.4e-11   42.1   0.1    1.4e-05   24.3   0.1    2.4  2  EF-hand_5  EF hand
    1.3e-09   37.7   0.1    2.5e-05   24.0   0.0    2.4  2  EF-hand_8  EF-hand domain pair
    5.3e-09   36.4   0.0    9.7e-09   35.6   0.0    1.4  1  EF-hand_7  EF-hand domain pair


Domain annotation for each model (and alignments):
>> EF-hand_6  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.7   0.0   1.6e-08   5.7e-05       2      26 ..      32      56 ..      31      61 .. 0.91
   2 !   20.3   0.0   9.3e-08   0.00033       2      28 ..      74     100 ..      73     111 .. 0.87
   3 ?   -2.8   0.0       2.5   8.9e+03       9      23 ..     117     131 ..     117     134 .. 0.78

  Alignments for each domain:
  == domain 1  score: 22.7 bits;  conditional E-value: 1.6e-08
   EF-hand_6  2 lreaFklfDkdgdGkidaeElrkal 26
                + ++F+++D +gdGk++  E+r++l
  KOO22538.1 32 VIDLFRKLDANGDGKVTGVEFRRVL 56
                5799******************998 PP

  == domain 2  score: 20.3 bits;  conditional E-value: 9.3e-08
   EF-hand_6   2 lreaFklfDkdgdGkidaeElrkalrk 28 
                 ++++F l+D+dg+G+i ++El + lr+
  KOO22538.1  74 VDSLFALLDRDGSGSIEYSELHARLRQ 100
                 5789*****************998886 PP

  == domain 3  score: -2.8 bits;  conditional E-value: 2.5
   EF-hand_6   9 fDkdgdGkidaeElr 23 
                 fD +  + +++  lr
  KOO22538.1 117 FDLEAKNRLSTYTLR 131
                 788889999888776 PP

>> EF-hand_1  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.7   0.0   1.3e-08   4.6e-05       3      26 ..      33      56 ..      31      59 .. 0.90
   2 !   20.6   0.0   6.1e-08   0.00022       1      26 [.      73      98 ..      73     100 .. 0.89

  Alignments for each domain:
  == domain 1  score: 22.7 bits;  conditional E-value: 1.3e-08
                HHHHHHHTTTSSSEEEHHHHHHHH CS
   EF-hand_1  3 keiFrefDkDgdGkIdfeEfkell 26
                 ++Fr++D +gdGk++  Ef+++l
  KOO22538.1 33 IDLFRKLDANGDGKVTGVEFRRVL 56
                589******************997 PP

  == domain 2  score: 20.6 bits;  conditional E-value: 6.1e-08
                HHHHHHHHHTTTSSSEEEHHHHHHHH CS
   EF-hand_1  1 elkeiFrefDkDgdGkIdfeEfkell 26
                +++ +F+++D+Dg+G I+++E+ + l
  KOO22538.1 73 DVDSLFALLDRDGSGSIEYSELHARL 98
                57999****************98765 PP

>> EF-hand_5  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.3   0.1     4e-09   1.4e-05       2      24 ..      33      55 ..      32      56 .. 0.91
   2 !   15.5   0.0   2.5e-06    0.0089       2      21 ..      75      94 ..      74      99 .. 0.87

  Alignments for each domain:
  == domain 1  score: 24.3 bits;  conditional E-value: 4e-09
                HHHHHHH-SS-SSCE-HHHHHHH CS
   EF-hand_5  2 kdtFqaiDlNgDGkIskeELktl 24
                 d+F+++D+NgDGk++  E++++
  KOO22538.1 33 IDLFRKLDANGDGKVTGVEFRRV 55
                589*************9999997 PP

  == domain 2  score: 15.5 bits;  conditional E-value: 2.5e-06
                HHHHHHH-SS-SSCE-HHHH CS
   EF-hand_5  2 kdtFqaiDlNgDGkIskeEL 21
                + +F  +D +g+G I  +EL
  KOO22538.1 75 DSLFALLDRDGSGSIEYSEL 94
                449****************9 PP

>> EF-hand_8  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.9   0.0   4.4e-05      0.16      30      49 ..      34      53 ..      32      58 .. 0.87
   2 !   24.0   0.0   6.9e-09   2.5e-05      21      53 ..      65      99 ..      51     101 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 4.4e-05
   EF-hand_8 30 ilfrefDtdgdGkisfeEFc 49
                +lfr++D +gdGk++  EF 
  KOO22538.1 34 DLFRKLDANGDGKVTGVEFR 53
                69************988885 PP

  == domain 2  score: 24.0 bits;  conditional E-value: 6.9e-09
   EF-hand_8 21 k..glseeevdilfrefDtdgdGkisfeEFcvlle 53
                +  +++e +vd+lf ++D+dg+G i + E +++l 
  KOO22538.1 65 EaeSFGEADVDSLFALLDRDGSGSIEYSELHARLR 99
                14589**************************9985 PP

>> EF-hand_7  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.6   0.0   2.7e-12   9.7e-09       6      69 ..      34      97 ..      31      99 .. 0.87

  Alignments for each domain:
  == domain 1  score: 35.6 bits;  conditional E-value: 2.7e-12
   EF-hand_7  6 eaFkelDtdgdgyldkeellrllrkifqgagegsklsdeelellfkefDtdkdGvisfdEFlkl 69
                + F++lD +gdg+++  e++r+l  + ++a+e++++ +  ++ lf  +D d++G+i ++E+++ 
  KOO22538.1 34 DLFRKLDANGDGKVTGVEFRRVLPLMASSASEAESFGEADVDSLFALLDRDGSGSIEYSELHAR 97
                68*******************6654444459999999999********************9875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (183 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       255  (0.0142228); expected 358.6 (0.02)
Passed bias filter:                      208  (0.0116013); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.39u 0.25s 00:00:00.64 Elapsed: 00:00:00.41
# Mc/sec: 1344.20
//
Query:       KOO22539.1  [L=247]
Description: hypothetical protein Ctob_006017, partial [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
  ------ inclusion threshold ------
       0.06   13.0   0.6      0.084   12.5   0.6    1.2  1  Peptidase_M50B  Peptidase M50B-like


Domain annotation for each model (and alignments):
>> Peptidase_M50B  Peptidase M50B-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.6   4.7e-06     0.084      17      58 ..     167     208 ..     155     227 .. 0.83

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 4.7e-06
  Peptidase_M50B  17 lrpfkllvvffHElGHalaalLtGgrvkgielhsdesGvtvt 58 
                     ++++ +l+   H  GH++ a+L Gg+v++i   ++esG+   
      KOO22539.1 167 VQLAHHLKRRGHDRGHGIDAILGGGEVHQILQGAHESGCVAQ 208
                     44577777788***************************8765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (247 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       445  (0.0248201); expected 358.6 (0.02)
Passed bias filter:                      263  (0.014669); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.24s 00:00:00.64 Elapsed: 00:00:00.40
# Mc/sec: 1873.90
//
Query:       KOO22540.1  [L=432]
Description: hypothetical protein Ctob_006016 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
      2e-21   76.1   0.0    4.6e-21   74.9   0.0    1.6  1  ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain
    4.2e-14   52.5   0.2      6e-14   52.0   0.2    1.2  1  ANAPC4       Anaphase-promoting complex, cyclosome, subunit 4
    3.6e-05   24.4   2.8    0.00038   21.2   0.2    3.3  3  WD40         WD domain, G-beta repeat
  ------ inclusion threshold ------
      0.018   15.1   0.2       0.03   14.4   0.2    1.2  1  TPR_MLP1_2   TPR/MLP1/MLP2-like protein
       0.11   10.5   0.0       0.49    8.3   0.0    1.8  2  IKI3         IKI3 family


Domain annotation for each model (and alignments):
>> ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   74.9   0.0   1.3e-24   4.6e-21       1      89 [.      20     111 ..      20     114 .. 0.88

  Alignments for each domain:
  == domain 1  score: 74.9 bits;  conditional E-value: 1.3e-24
  ANAPC4_WD40   1 lswcptmDLiAlatedgellvfRlng......qrvwtleedkedsevrsLaWkpdgklLavaysdgevrlldaesgkvvhslsvksekavtclgW 89 
                  ++wcptmDL+Al+t+d++l+v+R         ++++t   ++ d+ v++L W+pdg++Lav+++dg+++l+ +e+g+ + + + +se a +   W
   KOO22540.1  20 MEWCPTMDLLALVTADSQLMVHRRPVrqgaefHKLFTH--AGFDHPVTCLVWRPDGQVLAVGHADGSISLFGVEEGEQIGHAHEHSE-ALCLFRW 111
                  89*********************977444555666666..99***************************************999988.4666667 PP

>> ANAPC4  Anaphase-promoting complex, cyclosome, subunit 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.0   0.2   1.7e-17     6e-14       2     134 ..     259     390 ..     258     405 .. 0.95

  Alignments for each domain:
  == domain 1  score: 52.0 bits;  conditional E-value: 1.7e-17
      ANAPC4   2 llsldlpflssskkelvelarkssqlqslleyinetlkeiseewkealelldrklrnledelkeegeeeksisaeLldllltGlispalkdfLvnqlge 100
                 ll + +  l+  ++e++ la+ + q + l   ++e l++++  w+ea+ +l+ k+++l+ +l++   + k++s++L  ll+ G++sp l+ f+  +l e
  KOO22540.1 259 LLAFRTGQLTRARREIRALALSFMQCKALASRAKEGLHAAQRLWQEAVSPLHTKMASLAAKLQDTR-GLKTVSEQLAVLLAAGVPSPLLQAFFSTELRE 356
                 677889999999****************************************************98.89****************************** PP

      ANAPC4 101 rglkkwekavesayenirklvfehllpalerliv 134
                   l +  k    a + + +l++ hll    r ++
  KOO22540.1 357 TELTRALKCLGVAASALTQLCLMHLLDFSRRASL 390
                 *************************998888766 PP

>> WD40  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.6   0.0      0.34   1.2e+03       9      32 ..      15      36 ..       8      41 .. 0.69
   2 !   21.2   0.2   1.1e-07   0.00038       6      36 ..      53      87 ..      48      88 .. 0.79
   3 ?   -0.1   0.1      0.55     2e+03      14      31 ..     106     118 ..      93     122 .. 0.59

  Alignments for each domain:
  == domain 1  score: 0.6 bits;  conditional E-value: 0.34
                SSSSEEEEEEETTSSEEE.EEETTS CS
        WD40  9 GHssvtslafspdgawla.sGsdDg 32
                G  +++++ ++p  ++la     D 
  KOO22540.1 15 G--DISCMEWCPTMDLLAlVTA-DS 36
                4..49***99999999753333.55 PP

  == domain 2  score: 21.2 bits;  conditional E-value: 1.1e-07
                EEESS.SS...EEEEEEETTSSEEEEEETTSEEEE CS
        WD40  6 tltGH.ss...vtslafspdgawlasGsdDgtvri 36
                +l +H ++   vt+l + pdg+ la G+ Dg++ +
  KOO22540.1 53 KLFTHaGFdhpVTCLVWRPDGQVLAVGHADGSISL 87
                54456522467*********************987 PP

  == domain 3  score: -0.1 bits;  conditional E-value: 0.55
                 EEEEEETTSSEEEEEETT CS
        WD40  14 tslafspdgawlasGsdD 31 
                  +l      +w+a++ dD
  KOO22540.1 106 LCL-----FRWVAASADD 118
                 355.....4899877655 PP

>> TPR_MLP1_2  TPR/MLP1/MLP2-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.4   0.2   8.5e-06      0.03      58     115 ..     266     323 ..     260     329 .. 0.95

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 8.5e-06
  TPR_MLP1_2  58 elqalreelnelkaeiaelkaeaesakaeleeseesweeqkeelekelselekriedl 115
                 +l+++r e+  l     + ka a +ak+ l +++  w+e  + l +++++l ++++d 
  KOO22540.1 266 QLTRARREIRALALSFMQCKALASRAKEGLHAAQRLWQEAVSPLHTKMASLAAKLQDT 323
                 899***************************************************9996 PP

>> IKI3  IKI3 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.3   0.0   0.00014      0.49     120     146 ..      14      40 ..       8      45 .. 0.88
   2 ?   -0.6   0.0     0.066   2.4e+02     307     322 ..      64      79 ..      49      91 .. 0.58

  Alignments for each domain:
  == domain 1  score: 8.3 bits;  conditional E-value: 0.00014
                 XXXXXXXXXXXXXXXXXXXXXXXXXXX CS
        IKI3 120 esGieaaawspdeellalvtgeekvvl 146
                    i++++w+p  +llalvt++ ++++
  KOO22540.1  14 GGDISCMEWCPTMDLLALVTADSQLMV 40 
                 5679******************99976 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 0.066
                 XXXXXXXXXXXXXXXX CS
        IKI3 307 vqsLaWsadSevLavr 322
                 v+ L W  d++vLav 
  KOO22540.1  64 VTCLVWRPDGQVLAVG 79 
                 4444444444444442 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (432 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       348  (0.0194099); expected 358.6 (0.02)
Passed bias filter:                      259  (0.0144459); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.49u 0.25s 00:00:00.74 Elapsed: 00:00:00.42
# Mc/sec: 3101.27
//
Query:       KOO22541.1  [L=501]
Description: hypothetical protein Ctob_006015 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
       0.01   15.9   0.7      0.019   15.1   0.7    1.4  1  TPR_MLP1_2  TPR/MLP1/MLP2-like protein


Domain annotation for each model (and alignments):
>> TPR_MLP1_2  TPR/MLP1/MLP2-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.7     1e-06     0.019      99     125 ..     124     150 ..     102     152 .. 0.85

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 1e-06
  TPR_MLP1_2  99 eelekelselekriedlneqNklLhdQ 125
                   le++l+e+e+r ++l +qN++L + 
  KOO22541.1 124 LLLEEQLRESERRAQELRKQNAILRQT 150
                 579*********************875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (501 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       675  (0.0376485); expected 358.6 (0.02)
Passed bias filter:                      487  (0.0271627); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.53u 0.29s 00:00:00.82 Elapsed: 00:00:00.43
# Mc/sec: 3486.19
//
Query:       KOO22542.1  [L=972]
Description: hypothetical protein Ctob_006014 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (972 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       883  (0.0492498); expected 358.6 (0.02)
Passed bias filter:                      394  (0.0219756); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.74u 0.28s 00:00:01.02 Elapsed: 00:00:00.44
# Mc/sec: 6592.84
//
Query:       KOO22543.1  [L=128]
Description: cral trio domain-containing protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.3e-16   60.7   0.0    1.5e-16   60.5   0.0    1.1  1  CRAL_TRIO    CRAL/TRIO domain
    5.6e-05   23.3   0.0    6.2e-05   23.2   0.0    1.0  1  CRAL_TRIO_2  Divergent CRAL/TRIO domain


Domain annotation for each model (and alignments):
>> CRAL_TRIO  CRAL/TRIO domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.5   0.0   1.7e-20   1.5e-16      54     159 .]       7     107 ..       1     107 [. 0.92

  Alignments for each domain:
  == domain 1  score: 60.5 bits;  conditional E-value: 1.7e-20
   CRAL_TRIO  54 leedgqvegvtvviDlkglslskmlwkpisllkkilkilqdnyperlgkilivnaPklf.kfafklvkpfldektreKikfvspsnteatlekyidpeq 151
                 ++ d+q+ gv++v D++g++l++++    s+ + i +++  n p r+g+i+++n+P+++ ++++ +v +f++ k+++++++++++ ++  + +y+ +++
  KOO22543.1   7 NP-DAQRKGVCLVHDMRGIQLRNLD---SSVPRLIFTTVLPNLPIRVGRIILFNPPWVVgRVILPIVLTFMSSKLKSRLVVINGKPEP--IFEYVSRDN 99 
                 44.49********************...9999*************************986899*******************997776..********* PP

   CRAL_TRIO 152 lpkelGGt 159
                 lp elGG+
  KOO22543.1 100 LPTELGGS 107
                 *******6 PP

>> CRAL_TRIO_2  Divergent CRAL/TRIO domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.2   0.0   6.9e-09   6.2e-05      35     137 ..      11     112 ..       1     113 [. 0.80

  Alignments for each domain:
  == domain 1  score: 23.2 bits;  conditional E-value: 6.9e-09
  CRAL_TRIO_2  35 vgkeyvlVyfhtglssenkpslswlkkvystlprrykknlkklyivhpstfv.ktllktvlsafvsskf.rkkveyvsrleeLarkidrtqllkslPe 130
                  + k  +lV +++g++   + + s+ + ++ t+  +++ ++ ++++++p + v +++l++vl+++ ssk+  + v+   + e ++++++r++l+++l+ 
   KOO22543.1  11 QRKGVCLVHDMRGIQ-LRNLDSSVPRLIFTTVLPNLPIRVGRIILFNPPWVVgRVILPIVLTFM-SSKLkSRLVVINGKPEPIFEYVSRDNLPTELG- 105
                  45569********98.6999*****************************777477775555555.666736667777788889*************9. PP

  CRAL_TRIO_2 131 gvvshde 137
                  g ++ d+
   KOO22543.1 106 GSFEVDA 112
                  8777665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (128 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       279  (0.0155614); expected 358.6 (0.02)
Passed bias filter:                      268  (0.0149478); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.32u 0.22s 00:00:00.54 Elapsed: 00:00:00.34
# Mc/sec: 1119.62
//
Query:       KOO22544.1  [L=538]
Description: assembly protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.1e-61  208.3   0.1    1.4e-61  208.0   0.1    1.1  1  UPF0051   Uncharacterized protein family (UPF0051)


Domain annotation for each model (and alignments):
>> UPF0051  Uncharacterized protein family (UPF0051)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  208.0   0.1   7.8e-66   1.4e-61       2     217 ..     273     497 ..     272     498 .. 0.97

  Alignments for each domain:
  == domain 1  score: 208.0 bits;  conditional E-value: 7.8e-66
     UPF0051   2 qfertlivveegaevtiieeyagc.........gvveifvgenAklkyvkvqnwsedavnlstkraeegrdaklelttvslggkltrkepsvelkgega 91 
                 +++++l+ + ega++++ ++y+ c         gv+++ +g++A+l+++ vq++++ +++++++ +++g+ a++++t+++ gg+++r++  vel+ge+a
  KOO22544.1 273 SHPNLLVSLAEGASLKLAQHYFACdaqapylcnGVTRVQLGRSATLQHSYVQEQGRMSIHFDSVLVDVGAGASYSSTMLQSGGRIARTNHLVELTGEKA 371
                 578899***************666667777777****************************************************************** PP

     UPF0051  92 eaelnglylakgkqhldtrtkvdhngpntssrilskgvlkdearavfrgkikvrkgaqktdahqenrnLllsdkaradtiPeleidaddvkasHgAtvG 190
                 +++l+ l +a++ q +d+++kv h   +++s++  ++v+++++r+v++g + v +g+ +t+a+q +r+Lllsd+ar+d +P leid+d+v+++HgAt++
  KOO22544.1 372 SSNLRALSMAAEAQLVDVHSKVVHVSGECTSQQEQRNVVAGRSRVVWKGAVVVPRGSDNTNAKQLCRTLLLSDDARVDVQPTLEIDTDEVECTHGATIS 470
                 *************************************************************************************************** PP

     UPF0051 191 kideeqlfYLmsRGlseeeArrlivrg 217
                  +d+e +fYL++RGls+ +Ar+l++ g
  KOO22544.1 471 DLDDEMVFYLQARGLSRPDARALLLSG 497
                 ************************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (538 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       587  (0.0327403); expected 358.6 (0.02)
Passed bias filter:                      423  (0.0235931); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.53u 0.25s 00:00:00.78 Elapsed: 00:00:00.40
# Mc/sec: 3997.73
//
Query:       KOO22545.1  [L=396]
Description: leucine-rich repeat-containing protein 56 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    8.6e-11   41.9   1.8     0.0013   19.1   0.0    3.6  4  LRR_4     Leucine Rich repeats (2 copies)
    8.8e-11   41.6   0.0    1.7e-10   40.7   0.0    1.5  1  LRR_9     Leucine-rich repeat
    2.6e-08   33.5   3.8     0.0002   21.0   0.0    2.8  3  LRR_8     Leucine rich repeat
  ------ inclusion threshold ------
       0.11   12.6   1.4        9.9    6.5   0.0    3.7  4  LRR_6     Leucine Rich repeat


Domain annotation for each model (and alignments):
>> LRR_4  Leucine Rich repeats (2 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.3   0.3     5e-07    0.0022       1      32 [.      48      80 ..      48      93 .. 0.85
   2 !   19.1   0.0   2.8e-07    0.0013       3      39 ..      95     130 ..      93     134 .. 0.87
   3 !   12.4   0.0   3.6e-05      0.16       2      36 ..     116     152 ..     115     156 .. 0.87
   4 ?   -2.9   0.0       2.5   1.1e+04      22      29 ..     166     173 ..     159     176 .. 0.78

  Alignments for each domain:
  == domain 1  score: 18.3 bits;  conditional E-value: 5e-07
                SS--EEE--SS---E-S-HH.H-TT--EEE-.- CS
       LRR_4  1 pnLevLdLsnNqltdiplle.klpnLkeLdLsg 32
                pnL++L L++ +++++  l+ +l +L++L+L +
  KOO22545.1 48 PNLRELRLNGSNISTLRDLGtGLAKLRVLWLAR 80
                8********88*******9956*********54 PP

  == domain 2  score: 19.1 bits;  conditional E-value: 2.8e-07
                 --EEE--SS---E-S-HHH-TT--EEE-.-S-----G CS
       LRR_4   3 LevLdLsnNqltdiplleklpnLkeLdLsgNnlitdl 39 
                 L++L+L+ N ++d+++l   + L++LdL  N  +tdl
  KOO22545.1  95 LTELYLAFNEVQDLSPLMEADRLQVLDLEAN-AVTDL 130
                 9***************9999********778.55555 PP

  == domain 3  score: 12.4 bits;  conditional E-value: 3.6e-05
                 S--EEE--SS---E-S-...HHH-TT--EEE-.-S--- CS
       LRR_4   2 nLevLdLsnNqltdipl...leklpnLkeLdLsgNnli 36 
                 +L+vLdL  N +td+     l+++  L+ L+L gN +i
  KOO22545.1 116 RLQVLDLEANAVTDLAQiayLSGCAELHALTLEGN-PI 152
                 7*******88*******766668*********999.44 PP

  == domain 4  score: -2.9 bits;  conditional E-value: 2.5
                 -TT--EEE CS
       LRR_4  22 lpnLkeLd 29 
                 lp+L+ Ld
  KOO22545.1 166 LPQLELLD 173
                 89999887 PP

>> LRR_9  Leucine-rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.7   0.0   3.7e-14   1.7e-10      22     146 ..      51     173 ..       9     181 .. 0.97

  Alignments for each domain:
  == domain 1  score: 40.7 bits;  conditional E-value: 3.7e-14
       LRR_9  22 reldlrgykipvienlGatldqfdtidlsdndirkldgfPllkrlktlllnnnrivriaegleevlPnleelvltnnelqeladldPlaslkklellsl 120
                 rel l g  i+++ +lG+ l ++  + l+   +r l+g+  ++ l  l+l+ n +  +++ +e    +l+ l l  n +++la++  l    +l+ l+l
  KOO22545.1  51 RELRLNGSNISTLRDLGTGLAKLRVLWLARSGLRLLEGIGAFNTLTELYLAFNEVQDLSPLMEA--DRLQVLDLEANAVTDLAQIAYLSGCAELHALTL 147
                 89*********************************************************98874..79******************************* PP

       LRR_9 121 lknpvtnkkeyrlyviyklkqlrlld 146
                   np+++   yr  v   l+ql lld
  KOO22545.1 148 EGNPIAEGAGYRAQVKQALPQLELLD 173
                 ************************98 PP

>> LRR_8  Leucine rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.8   0.4   1.6e-05     0.073      23      57 ..      46      79 ..      41      87 .. 0.82
   2 !   21.0   0.0   4.6e-08    0.0002       2      61 .]      94     152 ..      93     152 .. 0.95
   3 ?   -3.2   0.0       1.7   7.6e+03      40      57 ..     291     308 ..     289     309 .. 0.69

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 1.6e-05
                T-TT--EEE--SS---GGGGGGGTT--S-.EEE-- CS
       LRR_8 23 glsnLkvLdLsnNllttlspgafsgLpsLrsLdLs 57
                +++nL++L L+  +++tl ++   gL++Lr L L 
  KOO22545.1 46 QVPNLRELRLNGSNISTL-RDLGTGLAKLRVLWLA 79
                578999999999999999.5999999999988775 PP

  == domain 2  score: 21.0 bits;  conditional E-value: 4.6e-08
                 T-SEEE-TTS--SEE-TTSSTT-TT--EEE--SS---GGGGGG.GTT--S-.EEE--SS-- CS
       LRR_8   2 nLtsLdLsnNrltslddeaFkglsnLkvLdLsnNllttlspga.fsgLpsLrsLdLsgNrL 61 
                 +Lt+L+L +N  ++l++ +     +L+vLdL  N  t l + a +sg++ L  L+L+gN++
  KOO22545.1  94 TLTELYLAFNEVQDLSPLMEA--DRLQVLDLEANAVTDLAQIAyLSGCAELHALTLEGNPI 152
                 79*******************..6**************9987769**************97 PP

  == domain 3  score: -3.2 bits;  conditional E-value: 1.7
                 GGGGGGTT--S-.EEE-- CS
       LRR_8  40 lspgafsgLpsLrsLdLs 57 
                 ++++a++ L  Lr   L+
  KOO22545.1 291 VEEEALELLDELRRFKLR 308
                 667777888888877665 PP

>> LRR_6  Leucine Rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.9   0.1     0.066     3e+02       3      16 ..      48      61 ..      48      62 .. 0.89
   2 ?    6.5   0.0    0.0022       9.9       3      17 ..      93     107 ..      93     108 .. 0.93
   3 ?   -0.3   0.0      0.34   1.5e+03       5      17 ..     117     129 ..     116     130 .. 0.89
   4 ?   -3.6   0.0       3.9   1.8e+04       5      15 ..     142     152 ..     141     152 .. 0.80

  Alignments for each domain:
  == domain 1  score: 1.9 bits;  conditional E-value: 0.066
       LRR_6  3 thLteLdLsgNdIg 16
                ++L+eL L+g +I+
  KOO22545.1 48 PNLRELRLNGSNIS 61
                58********9997 PP

  == domain 2  score: 6.5 bits;  conditional E-value: 0.0022
       LRR_6   3 thLteLdLsgNdIgD 17 
                 ++LteL L++N+++D
  KOO22545.1  93 NTLTELYLAFNEVQD 107
                 59**********998 PP

  == domain 3  score: -0.3 bits;  conditional E-value: 0.34
       LRR_6   5 LteLdLsgNdIgD 17 
                 L+ LdL  N ++D
  KOO22545.1 117 LQVLDLEANAVTD 129
                 899***9999998 PP

  == domain 4  score: -3.6 bits;  conditional E-value: 3.9
       LRR_6   5 LteLdLsgNdI 15 
                 L +L L gN I
  KOO22545.1 142 LHALTLEGNPI 152
                 67888999977 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (396 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       427  (0.0238162); expected 358.6 (0.02)
Passed bias filter:                      278  (0.0155056); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.45u 0.23s 00:00:00.68 Elapsed: 00:00:00.39
# Mc/sec: 3065.65
//
Query:       KOO22546.1  [L=499]
Description: hypothetical protein Ctob_006010 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    8.9e-11   42.2   0.1    1.1e-06   29.1   0.3    2.6  2  Ank_2     Ankyrin repeats (3 copies)
    3.3e-08   33.6   2.5     0.0022   18.2   0.0    4.3  4  Ank_5     Ankyrin repeats (many copies)
    1.6e-06   28.3   8.5        2.5    8.7   0.1    4.8  4  Ank       Ankyrin repeat
    2.4e-05   24.8   4.3       0.58   10.8   0.2    4.8  5  Ank_4     Ankyrin repeats (many copies)
     0.0037   17.4   0.2      0.057   13.5   0.2    2.2  1  DHHC      DHHC palmitoyltransferase


Domain annotation for each model (and alignments):
>> Ank_2  Ankyrin repeats (3 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.2   0.0    0.0005       1.8      32      81 ..      24      85 ..      13      87 .. 0.76
   2 !   29.1   0.3   3.2e-10   1.1e-06      12      82 ..     110     196 ..      94     199 .. 0.71

  Alignments for each domain:
  == domain 1  score: 9.2 bits;  conditional E-value: 0.0005
       Ank_2 32 yAakngnleivklLleh............adndgrtpLhyAarsghleivklLlekgadinl 81
                +A+ + ++e++++Lle              d+    p+h+Aar+  l+ +++Ll +ga+ ++
  KOO22546.1 24 AAIDREDVETLSMLLETdpsfpidesaswRDDMRLAPIHLAARQAALRSIQVLLVRGASATV 85
                46667788999****955566766666644577889********999****99977998776 PP

  == domain 2  score: 29.1 bits;  conditional E-value: 3.2e-10
       Ank_2  12 lvklLl.egadpn.k..ngktaLhyAakngnl..eivklLle.h.....adndgrtpLhyAars....g.hleivklLlekgadinlk 82 
                 ++ lLl +gad++ +  +++taLh+A ++ ++  ++++ L+         d  grt+Lhy a s    g  le++++Ll k+a+i+ +
  KOO22546.1 110 ALTLLLrAGADADaStpTHQTALHLASREASTgpDFLSRLVLvTretnaCDAAGRTALHYTALStvndGrALELAEVLL-KYANIDPR 196
                 6678889999999835799*********9877678886666322454556688*******999977663479*******.55666655 PP

>> Ank_5  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.2   0.0   6.2e-07    0.0022      18      53 ..      59      94 ..      47      97 .. 0.87
   2 !    5.0   0.1    0.0091        33       1      25 [.     114     137 ..     114     141 .. 0.88
   3 ?    1.3   0.0      0.12   4.5e+02      41      55 ..     155     169 ..     149     170 .. 0.85
   4 !    5.8   0.0    0.0052        18      24      56 .]     176     209 ..     169     209 .. 0.86

  Alignments for each domain:
  == domain 1  score: 18.2 bits;  conditional E-value: 6.2e-07
       Ank_5 18 tpLhvAakygaadvvrlLlargadlnltdsrGltal 53
                 p+h+Aa++ a++ +++Ll rga++++ d++G++ l
  KOO22546.1 59 APIHLAARQAALRSIQVLLVRGASATVHDGQGWSCL 94
                69******************************9866 PP

  == domain 2  score: 5.0 bits;  conditional E-value: 0.0091
       Ank_5   1 LlehgpadvnrldgggntpLhvAak 25 
                 Ll++g ad +++ +  +t+Lh+A++
  KOO22546.1 114 LLRAG-ADADASTPTHQTALHLASR 137
                 78999.99999999999******86 PP

  == domain 3  score: 1.3 bits;  conditional E-value: 0.12
       Ank_5  41 dlnltdsrGltaldl 55 
                  +n++d+ G+tal++
  KOO22546.1 155 ETNACDAAGRTALHY 169
                 57999*******997 PP

  == domain 4  score: 5.8 bits;  conditional E-value: 0.0052
       Ank_5  24 akygaadvvrlLl.argadlnltdsrGltaldlA 56 
                   ++a++++++Ll   + d++  ds+G++a ++A
  KOO22546.1 176 NDGRALELAEVLLkYANIDPRDADSEGRSAAEVA 209
                 55899********999**************9998 PP

>> Ank  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.7   0.2   0.00072       2.6       5      31 ..      60      87 ..      59      87 .. 0.88
   2 ?    4.9   0.1     0.011        40       2      29 ..      90     123 ..      89     126 .. 0.74
   3 !    7.8   0.0    0.0013       4.6       3      30 ..     129     159 ..     128     161 .. 0.71
   4 !    8.7   0.1    0.0007       2.5       2      31 ..     163     197 ..     162     198 .. 0.80

  Alignments for each domain:
  == domain 1  score: 8.7 bits;  conditional E-value: 0.00072
                HHHHHHHHTTHHHHHHHH.TTTSTTCBT CS
         Ank  5 PLHlAatngkkriiklLL.hGAnlnald 31
                P HlAa+ + +r i+ LL +GA+ + +d
  KOO22546.1 60 PIHLAARQAALRSIQVLLvRGASATVHD 87
                89****9999*****99999*9877766 PP

  == domain 2  score: 4.9 bits;  conditional E-value: 0.011
                 SBBHHH.HHH....HHTTHHHHHHHH.TTTSTTC CS
         Ank   2 GnTPLH.lAa....tngkkriiklLL.hGAnlna 29 
                 G+++LH lA      + k+  + lLL  GA+ +a
  KOO22546.1  90 GWSCLHhLATssadDESKALALTLLLrAGADADA 123
                 9999**7765655544558999999977999776 PP

  == domain 3  score: 7.8 bits;  conditional E-value: 0.0013
                 BBHHHHHHHHTT..HHHHHHHH..TTTSTTCB CS
         Ank   3 nTPLHlAatngk..kriiklLL..hGAnlnal 30 
                  T+LHlA+++++  ++ ++ L+   + + na 
  KOO22546.1 129 QTALHLASREAStgPDFLSRLVlvTR-ETNAC 159
                 5*******988888777776654555.56665 PP

  == domain 4  score: 8.7 bits;  conditional E-value: 0.0007
                 SBBHHHHHH...HHTT...HHHHHHHHTTTSTTCBT CS
         Ank   2 GnTPLHlAa...tngk...kriiklLLhGAnlnald 31 
                 G+T+LH+ a     ++   ++ ++ LL+ An++ +d
  KOO22546.1 163 GRTALHYTAlstV-NDgraLELAEVLLKYANIDPRD 197
                 99*****888853.4447899999999779998776 PP

>> Ank_4  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.2   0.1    0.0046        16       7      55 .]      24      77 ..      19      77 .. 0.80
   2 !   10.8   0.2   0.00016      0.58       2      41 ..      58      96 ..      57     103 .. 0.89
   3 !    7.9   0.2    0.0013       4.6       2      44 ..      91     137 ..      90     150 .. 0.76
   4 !    5.3   0.0    0.0085        30      28      43 ..     157     172 ..     140     188 .. 0.84
   5 ?    1.4   0.0      0.14   5.1e+02       3      38 ..     165     205 ..     164     206 .. 0.74

  Alignments for each domain:
  == domain 1  score: 6.2 bits;  conditional E-value: 0.0046
       Ank_4  7 yaaisgrlelvrlLlekgad..inaq.dnrsGet..alhiAakrgnveilklLl 55
                +a+  +++e++  Lle++++  i+++ + r+++   ++h Aa+   ++ ++ Ll
  KOO22546.1 24 AAIDREDVETLSMLLETDPSfpIDESaSWRDDMRlaPIHLAARQAALRSIQVLL 77
                566699**********98777788886679999899****99987777777775 PP

  == domain 2  score: 10.8 bits;  conditional E-value: 0.00016
       Ank_4  2 ltaLhyaaisgrlelvrlLlekgadinaqdnrsGetalhi 41
                l ++h aa +  l++++ Ll +ga+     +++G+++lh+
  KOO22546.1 58 LAPIHLAARQAALRSIQVLLVRGASATVH-DGQGWSCLHH 96
                679*****************9***97775.*********8 PP

  == domain 3  score: 7.9 bits;  conditional E-value: 0.0013
       Ank_4   2 ltaLhyaai....sgrlel....vrlLlekgadinaqdnrsGetalhiAak 44 
                 +++Lh++a     ++   +    + lLl  gad +a+++  ++talh A +
  KOO22546.1  91 WSCLHHLATssadDE---SkalaLTLLLRAGADADASTPT-HQTALHLASR 137
                 689999999865422...233346666667******9888.*******975 PP

  == domain 4  score: 5.3 bits;  conditional E-value: 0.0085
       Ank_4  28 naqdnrsGetalhi.Aa 43 
                 na+ ++ G+talh+ A+
  KOO22546.1 157 NAC-DAAGRTALHYtAL 172
                 788.99*******9555 PP

  == domain 5  score: 1.4 bits;  conditional E-value: 0.14
       Ank_4   3 taLhyaai.....sgrlelvrlLlek.gadinaqdnrsGeta 38 
                 taLhy a         lel++ Ll + ++d+    +++G++a
  KOO22546.1 165 TALHYTALstvndGRALELAEVLLKYaNIDPRDA-DSEGRSA 205
                 6666666666665666899999997768999886.8889887 PP

>> DHHC  DHHC palmitoyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.5   0.2   1.6e-05     0.057      35     133 ..     268     440 ..     261     441 .. 0.82

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 1.6e-05
        DHHC  35 hCpwlnnciGerNykyFllfllylllllilalvlllialvklveeekkseflavtllkk........................................ 93 
                 h  ++  ciG rN   F+lf+ +l+l l+  l l   + +++  + +   +  +  l                                          
  KOO22546.1 268 HAGVTIACIGLRNRVQFYLFVSALVLDLWALLALGALSAYDCSLDGDDANAADMGALAWkammqalapgegaelndangsleplglkqargwpleeevg 366
                 5566778**********9999999998888888776666666655555444444333326788899999999999999999999999999999999999 PP

        DHHC  94 ..................................llsilllvlsllfllllgllllfhlylilrnlTtieamkk 133
                                                    + i l+ l+ l++l l+++ + ++ ++l nlTt+e+ +k
  KOO22546.1 367 sggmpsppspaswvcanfptwcaalpgwrvhtavGMRIALAGLAGLVALPLTYFWYCRTRNVLVNLTTNERHNK 440
                 99999999999999999999999999999998887888888888999999999999999999999999998775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (499 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       465  (0.0259356); expected 358.6 (0.02)
Passed bias filter:                      327  (0.0182386); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.55u 0.24s 00:00:00.79 Elapsed: 00:00:00.43
# Mc/sec: 3509.15
//
Query:       KOO22547.1  [L=352]
Description: hypothetical protein Ctob_006019 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.2e-51  167.6  21.4    3.5e-05   23.5   0.0   10.6 10  LRR_6           Leucine Rich repeat
    7.2e-07   29.4  12.5        0.7   10.4   0.2    6.7  6  LRR_4           Leucine Rich repeats (2 copies)
  ------ inclusion threshold ------
      0.036   14.2   0.5        2.2    8.4   0.5    3.3  1  EIF_2_alpha     Eukaryotic translation initiation factor 2 al
      0.076   13.3   5.6         14    6.1   0.1    4.7  5  SpoU_sub_bind   RNA 2'-O ribose methyltransferase substrate b
       0.09   13.3   1.5         19    5.9   0.0    3.5  2  YusW            YusW-like protein
       0.13   12.6  19.0         29    5.2   0.0    7.4  7  HOASN           Haem-oxygenase-associated N-terminal helices
       0.35   10.9  25.8         13    5.9   0.0    7.9  9  CbiG_N          Cobalamin synthesis G N-terminal
        6.6    7.0  25.3         11    6.3   0.1    7.3  9  Arm-DNA-bind_1  Bacteriophage lambda integrase, Arm DNA-bindi
        8.1    6.5   8.0         34    4.5   0.0    5.0  6  CHB_HEX_C       Chitobiase/beta-hexosaminidase C-terminal dom


Domain annotation for each model (and alignments):
>> LRR_6  Leucine Rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.6   0.0   1.4e-06    0.0028       5      24 .]      68      87 ..      67      87 .. 0.95
   2 !   21.4   0.0   8.1e-08   0.00016       2      24 .]      93     115 ..      92     115 .. 0.93
   3 !   15.0   0.0   9.6e-06     0.019       2      24 .]     121     143 ..     120     143 .. 0.94
   4 !   23.5   0.0   1.8e-08   3.5e-05       5      24 .]     152     171 ..     148     171 .. 0.91
   5 !   19.5   0.5   3.5e-07   0.00069       2      24 .]     177     199 ..     176     199 .. 0.92
   6 !   12.4   0.0   6.6e-05      0.13       5      24 .]     208     227 ..     204     227 .. 0.86
   7 !   20.0   0.2   2.3e-07   0.00047       2      24 .]     233     255 ..     232     255 .. 0.88
   8 !   21.0   0.0   1.1e-07   0.00022       2      24 .]     261     283 ..     260     283 .. 0.93
   9 !   16.4   0.0   3.3e-06    0.0065       2      24 .]     289     311 ..     288     311 .. 0.93
  10 !    7.1   0.0    0.0033       6.6       2      22 ..     317     337 ..     316     338 .. 0.90

  Alignments for each domain:
  == domain 1  score: 17.6 bits;  conditional E-value: 1.4e-06
       LRR_6  5 LteLdLsgNdIgDeGaeaLa 24
                +t+L L  N IgDeGa+a+a
  KOO22547.1 68 VTTLYLGNNSIGDEGAIAIA 87
                599***************98 PP

  == domain 2  score: 21.4 bits;  conditional E-value: 8.1e-08
       LRR_6   2 nthLteLdLsgNdIgDeGaeaLa 24 
                 n  LteL+L +N+IgDeGa+a+a
  KOO22547.1  93 NAVLTELSLWYNNIGDEGAIAIA 115
                 667******************98 PP

  == domain 3  score: 15.0 bits;  conditional E-value: 9.6e-06
       LRR_6   2 nthLteLdLsgNdIgDeGaeaLa 24 
                 n+ Lt+L L  N+Ig eGa+ +a
  KOO22547.1 121 NSVLTTLRLDANKIGPEGAMVIA 143
                 899*****************987 PP

  == domain 4  score: 23.5 bits;  conditional E-value: 1.8e-08
       LRR_6   5 LteLdLsgNdIgDeGaeaLa 24 
                 +teL L +NdIgDeGa+a+a
  KOO22547.1 152 VTELRLDHNDIGDEGAKAIA 171
                 79****************98 PP

  == domain 5  score: 19.5 bits;  conditional E-value: 3.5e-07
       LRR_6   2 nthLteLdLsgNdIgDeGaeaLa 24 
                 n  Lt L+L +N+IgD+Ga+a+a
  KOO22547.1 177 NAVLTNLSLLHNNIGDDGAKAIA 199
                 6679*****************98 PP

  == domain 6  score: 12.4 bits;  conditional E-value: 6.6e-05
       LRR_6   5 LteLdLsgNdIgDeGaeaLa 24 
                 LteL L gNdIgD+Ga+ +a
  KOO22547.1 208 LTELFLWGNDIGDDGAKVIA 227
                 88888899*********987 PP

  == domain 7  score: 20.0 bits;  conditional E-value: 2.3e-07
       LRR_6   2 nthLteLdLsgNdIgDeGaeaLa 24 
                 n  +t+L+L++N+Ig+eGa+ ++
  KOO22547.1 233 NAVVTTLHLNSNNIGNEGAKVIS 255
                 55689**************9875 PP

  == domain 8  score: 21.0 bits;  conditional E-value: 1.1e-07
       LRR_6   2 nthLteLdLsgNdIgDeGaeaLa 24 
                 n  Lt+L+L +N IgD+Ga+a+a
  KOO22547.1 261 NAVLTKLELDYNSIGDDGAKAIA 283
                 667******************98 PP

  == domain 9  score: 16.4 bits;  conditional E-value: 3.3e-06
       LRR_6   2 nthLteLdLsgNdIgDeGaeaLa 24 
                 n  Lt+L+L gN+Ig +Ga+a+a
  KOO22547.1 289 NAVLTSLHLYGNKIGAAGAIAIA 311
                 667******************98 PP

  == domain 10  score: 7.1 bits;  conditional E-value: 0.0033
       LRR_6   2 nthLteLdLsgNdIgDeGaea 22 
                 n  Lt+L L +N +gD+G++a
  KOO22547.1 317 NAVLTKLYLLYNSMGDAGGKA 337
                 6679***************98 PP

>> LRR_4  Leucine Rich repeats (2 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.4   0.2   0.00035       0.7       4      34 ..      69     105 ..      68     106 .. 0.79
   2 !    8.5   0.0    0.0014       2.7       3      36 ..      96     134 ..      94     137 .. 0.77
   3 ?    2.6   1.0     0.099     2e+02       5      35 ..     154     189 ..     152     193 .. 0.49
   4 ?    5.7   0.6     0.011        21       3      39 ..     180     218 ..     179     222 .. 0.71
   5 ?    4.3   1.4      0.03        59       4      33 ..     237     272 ..     236     278 .. 0.62
   6 ?    5.7   0.0     0.011        22       3      33 ..     292     328 ..     291     333 .. 0.78

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00035
                 -EEE--SS---E-S-HH.....H.-TT.--EEE-.-S- CS
       LRR_4   4 evLdLsnNqltdiplle.....k.lpn.LkeLdLsgNn 34 
                 ++L+L+nN + d + ++     k +   L+eL+L+ Nn
  KOO22547.1  69 TTLYLGNNSIGDEGAIAiaeamKvN-AvLTELSLWYNN 105
                 89**********9996656765533.26******9995 PP

  == domain 2  score: 8.5 bits;  conditional E-value: 0.0014
                 --EEE--SS---E-S-HH.....H.-TT--EEE-.-S--- CS
       LRR_4   3 LevLdLsnNqltdiplle.....k.lpnLkeLdLsgNnli 36 
                 L++L+L  N++ d + ++     k +  L++L L  N +i
  KOO22547.1  96 LTELSLWYNNIGDEGAIAiaealKvNSVLTTLRLDAN-KI 134
                 99***********999555566663555*****9666.66 PP

  == domain 3  score: 2.6 bits;  conditional E-value: 0.099
                 EEE--SS---E-S-..HH...H.-TT--EEE-.-S-- CS
       LRR_4   5 vLdLsnNqltdipl..le...k.lpnLkeLdLsgNnl 35 
                 +L L +N + d +   ++   k +  L+ L+L +N +
  KOO22547.1 154 ELRLDHNDIGDEGAkaIAealKvNAVLTNLSLLHN-N 189
                 66666666666655542233332222666666555.2 PP

  == domain 4  score: 5.7 bits;  conditional E-value: 0.011
                 --EEE--SS---E-S-..HH...H.-TT--EEE-.-S-----G CS
       LRR_4   3 LevLdLsnNqltdipl..le...k.lpnLkeLdLsgNnlitdl 39 
                 L++L+L +N++ d +   ++   k +  L+eL L+gN    d+
  KOO22547.1 180 LTNLSLLHNNIGDDGAkaIAealKvNVVLTELFLWGN----DI 218
                 8999999999998444662244443555999999999....77 PP

  == domain 5  score: 4.3 bits;  conditional E-value: 0.03
                 -EEE--SS---E-S-...HH..H.-TT.--EEE-.-S CS
       LRR_4   4 evLdLsnNqltdipl...le..k.lpn.LkeLdLsgN 33 
                 ++L+L++N++   +     e  k +   L++L L  N
  KOO22547.1 237 TTLHLNSNNIGNEGAkviSEalKvN-AvLTKLELDYN 272
                 89****99*9965556532233323.14777777555 PP

  == domain 6  score: 5.7 bits;  conditional E-value: 0.011
                 --EEE--SS---E-S-HH...H.-TT..--EEE-.-S CS
       LRR_4   3 LevLdLsnNqltdiplle...k.lpn..LkeLdLsgN 33 
                 L++L+L +N++   + ++     + n  L++L+L  N
  KOO22547.1 292 LTSLHLYGNKIGAAGAIAiaeAlMVNavLTKLYLLYN 328
                 899********99888444465588888888888666 PP

>> EIF_2_alpha  Eukaryotic translation initiation factor 2 alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.4   0.5    0.0011       2.2      44      80 ..     251     287 ..      85     346 .. 0.89

  Alignments for each domain:
  == domain 1  score: 8.4 bits;  conditional E-value: 0.0011
                  HHCTHHHHHHT-EEEEEEEEEEE-STTHHHHHHHHHH CS
  EIF_2_alpha  44 veiikkklkpqkvkiradieltcftkdGveaIkeaLk 80 
                   + i++ lk+++v  + +++ ++++ dG +aI eaLk
   KOO22547.1 251 AKVISEALKVNAVLTKLELDYNSIGDDGAKAIAEALK 287
                  6789999999999999999999999999999999999 PP

>> SpoU_sub_bind  RNA 2'-O ribose methyltransferase substrate binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.8   0.0      0.14   2.9e+02       4      47 ..     110     153 ..     109     159 .. 0.80
   2 ?    4.6   0.2      0.02        41       3      41 ..     165     204 ..     164     211 .. 0.70
   3 ?    6.1   0.1    0.0068        14       4      43 ..     194     233 ..     193     240 .. 0.79
   4 ?    2.0   0.1      0.12   2.5e+02       3      42 ..     249     289 ..     248     296 .. 0.71
   5 ?   -1.4   0.0       1.5     3e+03       7      26 ..     309     328 ..     305     345 .. 0.77

  Alignments for each domain:
  == domain 1  score: 1.8 bits;  conditional E-value: 0.14
  SpoU_sub_bind   4 GlhaVleaLksgrriekllvtegradkrleellklakkrgikve 47 
                    G  a+ eaLk ++ +++l ++ ++ +++   ++++a k ++ v 
     KOO22547.1 110 GAIAIAEALKVNSVLTTLRLDANKIGPEGAMVIAEALKVNVVVT 153
                    677899*****999999999999999997777777777666665 PP

  == domain 2  score: 4.6 bits;  conditional E-value: 0.02
  SpoU_sub_bind   3 yGlhaVleaLksgrriekl.lvtegradkrleellklakk 41 
                    +G +a+ eaLk +  ++ l l++++  d+  + + +++k 
     KOO22547.1 165 EGAKAIAEALKVNAVLTNLsLLHNNIGDDGAKAIAEALKV 204
                    799*********9889999455555555555566666554 PP

  == domain 3  score: 6.1 bits;  conditional E-value: 0.0068
  SpoU_sub_bind   4 GlhaVleaLksgrriekllvtegradkrleellklakkrg 43 
                    G +a+ eaLk +  +++l++  ++ +++  +++++a k +
     KOO22547.1 194 GAKAIAEALKVNVVLTELFLWGNDIGDDGAKVIAEALKVN 233
                    889*********99*********66666567777776544 PP

  == domain 4  score: 2.0 bits;  conditional E-value: 0.12
  SpoU_sub_bind   3 yGlhaVleaLksgrriekllvteg.radkrleellklakkr 42 
                    +G + + eaLk +  ++kl ++ +   d+  + + +++k +
     KOO22547.1 249 EGAKVISEALKVNAVLTKLELDYNsIGDDGAKAIAEALKVN 289
                    79999999999998888888888844444455666666655 PP

  == domain 5  score: -1.4 bits;  conditional E-value: 1.5
  SpoU_sub_bind   7 aVleaLksgrriekllvteg 26 
                    a+ eaL  +  ++kl++  +
     KOO22547.1 309 AIAEALMVNAVLTKLYLLYN 328
                    78999999988999998776 PP

>> YusW  YusW-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.3   0.3     0.058   1.2e+02      48      48 ..     148     148 ..      87     213 .. 0.58
   2 ?    5.9   0.0    0.0093        19      47      84 ..     259     296 ..     228     302 .. 0.86

  Alignments for each domain:
  == domain 1  score: 3.3 bits;  conditional E-value: 0.058
        YusW  48 l 48 
                 +
  KOO22547.1 148 V 148
                 1 PP

  == domain 2  score: 5.9 bits;  conditional E-value: 0.0093
        YusW  47 elealLseLsvdsetsedevisqvlsalnldedveefe 84 
                 +++a+L++L++d ++  d+  +++ +al+++  ++++ 
  KOO22547.1 259 KVNAVLTKLELDYNSIGDDGAKAIAEALKVNAVLTSLH 296
                 68999*********************999997777665 PP

>> HOASN  Haem-oxygenase-associated N-terminal helices
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.3   0.3      0.11   2.1e+02      13      40 ..     105     132 ..      73     135 .. 0.65
   2 ?    0.8   0.0      0.33   6.5e+02      17      33 ..     137     153 ..     126     162 .. 0.77
   3 ?    3.3   0.3     0.056   1.1e+02      17      39 ..     165     187 ..     156     202 .. 0.80
   4 ?    0.7   0.0      0.35     7e+02      11      32 ..     188     208 ..     180     218 .. 0.77
   5 ?    3.8   0.1     0.039        78      17      38 ..     221     242 ..     215     248 .. 0.80
   6 ?    5.2   0.0     0.014        29      12      38 ..     244     270 ..     238     276 .. 0.83
   7 ?    4.3   0.5     0.026        53      18      47 ..     278     307 ..     270     333 .. 0.80

  Alignments for each domain:
  == domain 1  score: 2.3 bits;  conditional E-value: 0.11
                 T--SHHHHHHHHHTSTT--HHHHHHHHH CS
       HOASN  13 nlpieeaalladalkvgasldqidlale 40 
                 n+  e a  +a+alkv++ l  + l ++
  KOO22547.1 105 NIGDEGAIAIAEALKVNSVLTTLRLDAN 132
                 4444555567777777776666666555 PP

  == domain 2  score: 0.8 bits;  conditional E-value: 0.33
                 HHHHHHHHHTSTT--HH CS
       HOASN  17 eeaalladalkvgasld 33 
                 e a ++a+alkv+  + 
  KOO22547.1 137 EGAMVIAEALKVNVVVT 153
                 77899******987665 PP

  == domain 3  score: 3.3 bits;  conditional E-value: 0.056
                 HHHHHHHHHTSTT--HHHHHHHH CS
       HOASN  17 eeaalladalkvgasldqidlal 39 
                 e a+ +a+alkv+a l  + l  
  KOO22547.1 165 EGAKAIAEALKVNAVLTNLSLLH 187
                 67899*********998887655 PP

  == domain 4  score: 0.7 bits;  conditional E-value: 0.35
                 HHT--SHHHHHHHHHTSTT--H CS
       HOASN  11 lqnlpieeaalladalkvgasl 32 
                   n+  + a+ +a+alkv+  l
  KOO22547.1 188 N-NIGDDGAKAIAEALKVNVVL 208
                 4.777888999******98766 PP

  == domain 5  score: 3.8 bits;  conditional E-value: 0.039
                 HHHHHHHHHTSTT--HHHHHHH CS
       HOASN  17 eeaalladalkvgasldqidla 38 
                 + a+++a+alkv+a +  + l 
  KOO22547.1 221 DGAKVIAEALKVNAVVTTLHLN 242
                 5689**********98877665 PP

  == domain 6  score: 5.2 bits;  conditional E-value: 0.014
                 HT--SHHHHHHHHHTSTT--HHHHHHH CS
       HOASN  12 qnlpieeaalladalkvgasldqidla 38 
                 +n+  e a+++++alkv+a l +++l 
  KOO22547.1 244 NNIGNEGAKVISEALKVNAVLTKLELD 270
                 4788899************99998875 PP

  == domain 7  score: 4.3 bits;  conditional E-value: 0.026
                 HHHHHHHHTSTT--HHHHHHHHHHHHHHHH CS
       HOASN  18 eaalladalkvgasldqidlalekllalae 47 
                  a+ +a+alkv+a l  + l  +k+ a  +
  KOO22547.1 278 GAKAIAEALKVNAVLTSLHLYGNKIGAAGA 307
                 67889*********9999999888877554 PP

>> CbiG_N  Cobalamin synthesis G N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.4   0.1     0.081   1.6e+02      54      78 ..      73      97 ..      54     100 .. 0.81
   2 ?    2.3   0.1     0.088   1.8e+02      61      79 ..     108     126 ..     104     128 .. 0.88
   3 ?   -0.7   0.0      0.75   1.5e+03      64      78 ..     139     153 ..     131     157 .. 0.85
   4 ?    4.5   0.7     0.018        36      56      79 ..     159     182 ..     140     185 .. 0.84
   5 ?    2.5   0.1     0.076   1.5e+02      56      78 ..     187     209 ..     183     211 .. 0.87
   6 ?    5.9   0.0    0.0065        13      60      79 ..     219     238 ..     214     240 .. 0.89
   7 ?    2.1   0.1     0.097   1.9e+02      60      78 ..     247     265 ..     242     268 .. 0.90
   8 ?    3.4   0.0      0.04        80      61      79 ..     276     294 ..     272     296 .. 0.89
   9 ?   -1.6   0.1       1.4   2.8e+03      64      78 ..     307     321 ..     297     322 .. 0.76

  Alignments for each domain:
  == domain 1  score: 2.4 bits;  conditional E-value: 0.081
                -TT.TTHHHHHHHHHHHTT-EE-XX CS
      CbiG_N 54 sGhlggAnelAeeiaallgaepviT 78
                 G    ++e A  ia+++++++v+T
  KOO22547.1 73 LGNNSIGDEGAIAIAEAMKVNAVLT 97
                466677889999***********99 PP

  == domain 2  score: 2.3 bits;  conditional E-value: 0.088
                 HHHHHHHHHHTT-EE-XXX CS
      CbiG_N  61 nelAeeiaallgaepviTt 79 
                 +e A  ia++l+++ v+Tt
  KOO22547.1 108 DEGAIAIAEALKVNSVLTT 126
                 677999************9 PP

  == domain 3  score: -0.7 bits;  conditional E-value: 0.75
                 HHHHHHHTT-EE-XX CS
      CbiG_N  64 AeeiaallgaepviT 78 
                 A  ia++l+++ v+T
  KOO22547.1 139 AMVIAEALKVNVVVT 153
                 778999****99999 PP

  == domain 4  score: 4.5 bits;  conditional E-value: 0.018
                 T.TTHHHHHHHHHHHTT-EE-XXX CS
      CbiG_N  56 hlggAnelAeeiaallgaepviTt 79 
                 h   ++e A+ ia++l++++v+T 
  KOO22547.1 159 HNDIGDEGAKAIAEALKVNAVLTN 182
                 66778999**************96 PP

  == domain 5  score: 2.5 bits;  conditional E-value: 0.076
                 T.TTHHHHHHHHHHHTT-EE-XX CS
      CbiG_N  56 hlggAnelAeeiaallgaepviT 78 
                 h + +++ A+ ia++l+++ v+T
  KOO22547.1 187 HNNIGDDGAKAIAEALKVNVVLT 209
                 55668899************999 PP

  == domain 6  score: 5.9 bits;  conditional E-value: 0.0065
                 HHHHHHHHHHHTT-EE-XXX CS
      CbiG_N  60 AnelAeeiaallgaepviTt 79 
                 +++ A+ ia++l++++v+Tt
  KOO22547.1 219 GDDGAKVIAEALKVNAVVTT 238
                 577899*************9 PP

  == domain 7  score: 2.1 bits;  conditional E-value: 0.097
                 HHHHHHHHHHHTT-EE-XX CS
      CbiG_N  60 AnelAeeiaallgaepviT 78 
                 +ne A+ i+++l++++v+T
  KOO22547.1 247 GNEGAKVISEALKVNAVLT 265
                 7999*************99 PP

  == domain 8  score: 3.4 bits;  conditional E-value: 0.04
                 HHHHHHHHHHTT-EE-XXX CS
      CbiG_N  61 nelAeeiaallgaepviTt 79 
                 ++ A+ ia++l++++v+T+
  KOO22547.1 276 DDGAKAIAEALKVNAVLTS 294
                 7789*************96 PP

  == domain 9  score: -1.6 bits;  conditional E-value: 1.4
                 HHHHHHHTT-EE-XX CS
      CbiG_N  64 AeeiaallgaepviT 78 
                 A  ia++l +++v+T
  KOO22547.1 307 AIAIAEALMVNAVLT 321
                 667999999999988 PP

>> Arm-DNA-bind_1  Bacteriophage lambda integrase, Arm DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.1   0.1     0.053     1e+02      41      62 ..      77      98 ..      74     101 .. 0.89
   2 ?    1.7   0.1      0.15   2.9e+02      42      61 ..     106     125 ..     103     131 .. 0.86
   3 ?    3.0   0.2     0.056   1.1e+02      42      61 ..     162     181 ..     158     189 .. 0.87
   4 ?    5.3   0.1     0.011        22      42      62 ..     190     210 ..     186     212 .. 0.90
   5 ?   -0.0   0.1       0.5     1e+03      42      62 ..     218     238 ..     216     249 .. 0.84
   6 ?   -1.5   0.0       1.5     3e+03      42      61 ..     246     265 ..     239     272 .. 0.85
   7 ?    6.3   0.1    0.0055        11      41      62 ..     273     294 ..     267     301 .. 0.89
   8 ?   -0.4   0.1      0.68   1.3e+03      42      61 ..     302     321 ..     296     325 .. 0.85
   9 ?   -3.7   0.0       7.2   1.4e+04      41      54 ..     329     342 ..     328     343 .. 0.83

  Alignments for each domain:
  == domain 1  score: 3.1 bits;  conditional E-value: 0.053
                    EEESSHHHHHHHHHHHHHHHTS CS
  Arm-DNA-bind_1 41 sLGtdereAieeAveaNtrlae 62
                    s+G++ + Ai+eA++ N  l e
      KOO22547.1 77 SIGDEGAIAIAEAMKVNAVLTE 98
                    689999***********99976 PP

  == domain 2  score: 1.7 bits;  conditional E-value: 0.15
                     EESSHHHHHHHHHHHHHHHT CS
  Arm-DNA-bind_1  42 LGtdereAieeAveaNtrla 61 
                     +G++ + Ai+eA++ N  l 
      KOO22547.1 106 IGDEGAIAIAEALKVNSVLT 125
                     799999**********9885 PP

  == domain 3  score: 3.0 bits;  conditional E-value: 0.056
                     EESSHHHHHHHHHHHHHHHT CS
  Arm-DNA-bind_1  42 LGtdereAieeAveaNtrla 61 
                     +G++ ++Ai+eA++ N  l 
      KOO22547.1 162 IGDEGAKAIAEALKVNAVLT 181
                     79999***********9886 PP

  == domain 4  score: 5.3 bits;  conditional E-value: 0.011
                     EESSHHHHHHHHHHHHHHHTS CS
  Arm-DNA-bind_1  42 LGtdereAieeAveaNtrlae 62 
                     +G+d ++Ai+eA++ N  l e
      KOO22547.1 190 IGDDGAKAIAEALKVNVVLTE 210
                     7***************99876 PP

  == domain 5  score: -0.0 bits;  conditional E-value: 0.5
                     EESSHHHHHHHHHHHHHHHTS CS
  Arm-DNA-bind_1  42 LGtdereAieeAveaNtrlae 62 
                     +G+d ++ i+eA++ N  +  
      KOO22547.1 218 IGDDGAKVIAEALKVNAVVTT 238
                     799*************87765 PP

  == domain 6  score: -1.5 bits;  conditional E-value: 1.5
                     EESSHHHHHHHHHHHHHHHT CS
  Arm-DNA-bind_1  42 LGtdereAieeAveaNtrla 61 
                     +G++ ++ i eA++ N  l 
      KOO22547.1 246 IGNEGAKVISEALKVNAVLT 265
                     788999999******99885 PP

  == domain 7  score: 6.3 bits;  conditional E-value: 0.0055
                     EEESSHHHHHHHHHHHHHHHTS CS
  Arm-DNA-bind_1  41 sLGtdereAieeAveaNtrlae 62 
                     s+G+d ++Ai+eA++ N  l +
      KOO22547.1 273 SIGDDGAKAIAEALKVNAVLTS 294
                     79***************99865 PP

  == domain 8  score: -0.4 bits;  conditional E-value: 0.68
                     EESSHHHHHHHHHHHHHHHT CS
  Arm-DNA-bind_1  42 LGtdereAieeAveaNtrla 61 
                     +G + + Ai+eA+  N  l 
      KOO22547.1 302 IGAAGAIAIAEALMVNAVLT 321
                     6888899*******999885 PP

  == domain 9  score: -3.7 bits;  conditional E-value: 7.2
                     EEESSHHHHHHHHH CS
  Arm-DNA-bind_1  41 sLGtdereAieeAv 54 
                     s+G++  +A+ +Av
      KOO22547.1 329 SMGDAGGKAVRDAV 342
                     68999999999998 PP

>> CHB_HEX_C  Chitobiase/beta-hexosaminidase C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.0   0.0      0.21   4.3e+02      14      31 ..     134     151 ..     128     163 .. 0.87
   2 ?   -2.1   0.0         2   4.1e+03      18      33 ..     166     181 ..     162     185 .. 0.83
   3 ?   -1.1   0.0      0.94   1.9e+03      18      32 ..     194     208 ..     190     210 .. 0.90
   4 ?   -0.2   0.0       0.5   9.9e+02      18      34 ..     222     238 ..     218     242 .. 0.83
   5 ?    4.5   0.0     0.017        34      17      41 ..     249     273 ..     245     297 .. 0.80
   6 ?   -2.2   0.0       2.2   4.4e+03      15      35 ..     303     323 ..     301     333 .. 0.77

  Alignments for each domain:
  == domain 1  score: 1.0 bits;  conditional E-value: 0.21
   CHB_HEX_C  14 lPvpGAkvengkLeanva 31 
                 + + GA v    L++nv 
  KOO22547.1 134 IGPEGAMVIAEALKVNVV 151
                 6688************96 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 2
   CHB_HEX_C  18 GAkvengkLeanvalP 33 
                 GAk     L++n  l 
  KOO22547.1 166 GAKAIAEALKVNAVLT 181
                 99999999**998775 PP

  == domain 3  score: -1.1 bits;  conditional E-value: 0.94
   CHB_HEX_C  18 GAkvengkLeanval 32 
                 GAk     L++nv l
  KOO22547.1 194 GAKAIAEALKVNVVL 208
                 9***********976 PP

  == domain 4  score: -0.2 bits;  conditional E-value: 0.5
   CHB_HEX_C  18 GAkvengkLeanvalPG 34 
                 GAkv    L++n     
  KOO22547.1 222 GAKVIAEALKVNAVVTT 238
                 9***********87655 PP

  == domain 5  score: 4.5 bits;  conditional E-value: 0.017
   CHB_HEX_C  17 pGAkvengkLeanvalPGltieYsl 41 
                  GAkv +  L++n  l  l++ Y  
  KOO22547.1 249 EGAKVISEALKVNAVLTKLELDYNS 273
                 59************99999999975 PP

  == domain 6  score: -2.2 bits;  conditional E-value: 2.2
   CHB_HEX_C  15 PvpGAkvengkLeanvalPGl 35 
                   +GA+     L +n  l  l
  KOO22547.1 303 GAAGAIAIAEALMVNAVLTKL 323
                 568999999999999887655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (352 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       327  (0.0182386); expected 358.6 (0.02)
Passed bias filter:                      209  (0.0116571); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.55u 0.24s 00:00:00.79 Elapsed: 00:00:00.42
# Mc/sec: 2525.74
//
Query:       KOO22548.1  [L=95]
Description: hypothetical protein Ctob_006018 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (95 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       254  (0.014167); expected 358.6 (0.02)
Passed bias filter:                      245  (0.013665); expected 358.6 (0.02)
Passed Vit filter:                        11  (0.000613531); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.26s 00:00:00.59 Elapsed: 00:00:00.38
# Mc/sec: 745.93
//
Query:       KOO22549.1  [L=488]
Description: d-3-phosphoglycerate dehydrogenase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    6.6e-33  113.6   0.0    1.1e-32  112.9   0.0    1.3  1  2-Hacid_dh_C   D-isomer specific 2-hydroxyacid dehydrogenase,
    7.3e-18   64.5   0.0    1.3e-17   63.7   0.0    1.3  1  2-Hacid_dh     D-isomer specific 2-hydroxyacid dehydrogenase,
    0.00035   20.8   0.0      0.001   19.2   0.0    1.9  1  NAD_binding_2  NAD binding domain of 6-phosphogluconate dehyd
    0.00041   20.0   0.0      0.001   18.8   0.0    1.6  1  ACT            ACT domain
  ------ inclusion threshold ------
      0.045   13.0   0.0       0.11   11.7   0.0    1.6  2  DUF1350        Protein of unknown function (DUF1350)
       0.12   13.2   0.1       0.35   11.7   0.0    1.9  2  GFO_IDH_MocA   Oxidoreductase family, NAD-binding Rossmann fo
       0.93   10.0   9.5        2.1    8.9   9.5    1.5  1  K_channel_TID  Potassium channel Kv1.4 tandem inactivation do


Domain annotation for each model (and alignments):
>> 2-Hacid_dh_C  D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  112.9   0.0   4.2e-36   1.1e-32      16     178 .]     185     346 ..     170     346 .. 0.85

  Alignments for each domain:
  == domain 1  score: 112.9 bits;  conditional E-value: 4.2e-36
                   HHHHTTCC...HTTCCGSBS-GTTSEEEEES-SHHHHHHHHHHHHTT-EEEEESSSHHHHH..CHHHHTCEECSHHHHHHH-SEEEE-S-.-STTTT CS
  2-Hacid_dh_C  16 eevregew...ksekallgkelsgktvGiiGlGrIGqavakrlkafgmkviaydrskkkee..eeeelgvelvsleellaesDivslhlp.ltpetr 106
                   +e ++ e    k+++ + g+el gkt+Gi GlG+IG  va+ + a+gmkv++yd++ + ++  + +++  +++sle+++++sD+vs+++p ++  t+
    KOO22549.1 185 KEHKKIEKrieKDKSLFGGQELLGKTLGICGLGNIGAMVAESALALGMKVVGYDPKLSVDAawRLSSKVERCDSLEDVFSKSDYVSVNMPyIKGVTH 281
                   4444333334567778999*************************************99888877777777999*****************55668** PP

                   TSBSHHHHHCSTTTEEEEESS-GGGB-HHHHHHHHHTTSCCEEEES--SSSSSGTCHHHHHSTTEEE-SS-T CS
  2-Hacid_dh_C 107 hlinaeelakmkkgailiNtaRGglvdeeaLleaLksgkiagaalDvfeeeplpedspllelpnviltPHia 178
                   + i+a+ lakmk++  l+N+aRG++vd +aLl+  ++g+ + + +D f+ e ++      ++p++++ PH++
    KOO22549.1 282 GAISAAVLAKMKPTCHLLNFARGEIVDGQALLQLYENGHKGRYICD-FADEGMQ------NHPKFMCIPHLG 346
                   **********************************************.5666666......578888888876 PP

>> 2-Hacid_dh  D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.7   0.0     5e-21   1.3e-17      60     134 .]     116     378 ..      94     378 .. 0.97

  Alignments for each domain:
  == domain 1  score: 63.7 bits;  conditional E-value: 5e-21
                 TT--EEEESSSSCTTB-HHHHHHTT-EEEE-TTTTHHHHHHHH........................................................ CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx........................................................ RF
  2-Hacid_dh  60 pkLkviaragvGvDnvDldaakerGilVtnvpgystesvAElt........................................................ 102
                 p ++ iar+g+G++n+ ++ +++ Gi V+n+pg++++sv El+                                                        
  KOO22549.1 116 PTVRAIARCGAGTNNIPIEEMTKVGIPVFNTPGANANSVKELVlaglllasrdivggilhtknkivpeekehkkiekriekdkslfggqellgktlgic 214
                 79************************************************************************************************* PP

                 ................................................................................................... CS
                 ................................................................................................... RF
  2-Hacid_dh 103 ................................................................................................... 102
                                                                                                                    
  KOO22549.1 215 glgnigamvaesalalgmkvvgydpklsvdaawrlsskvercdsledvfsksdyvsvnmpyikgvthgaisaavlakmkptchllnfargeivdgqall 313
                 *************************************************************************************************** PP

                 .................................T-BHHHHHHHHHHHHHHHHHHHTTCCGTTBCS CS
                 .................................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  2-Hacid_dh 103 .................................aaTeeaqeniaeeaaenlvaflkgespanavn 134
                                                  a+Teea  n a++aa+++++fl+++s  n vn
  KOO22549.1 314 qlyenghkgryicdfadegmqnhpkfmciphlgASTEEAEDNCAAMAANQVINFLETGSIINSVN 378
                 **************************************************************998 PP

>> NAD_binding_2  NAD binding domain of 6-phosphogluconate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.2   0.0     4e-07     0.001       2      81 ..     211     293 ..     210     320 .. 0.79

  Alignments for each domain:
  == domain 1  score: 19.2 bits;  conditional E-value: 4e-07
                    EEEE--SHHHHHHHHHHHHTT-EEEEE-SSHHHHHHH.HHTTEEE-SSHHHHHHHCSEEEE-SSSHHHHHHHHHS..HCCC-- CS
  NAD_binding_2   2 igfiGlGvMGsnmalnllkagykvavynrtkekveel.vaegakaaesieelvasldvvitmvkagkavdevieg..llealk 81 
                    +g+ GlG++G+  a+  l+ g+kv++y+ + +   ++ ++++++ ++s+e+++++ d v + ++  k v +   +  +l+++k
     KOO22549.1 211 LGICGLGNIGAMVAESALALGMKVVGYDPKLSVDAAWrLSSKVERCDSLEDVFSKSDYVSVNMPYIKGVTHGAISaaVLAKMK 293
                    799*************************77554444314456*****************999988777765433334555555 PP

>> ACT  ACT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.8   0.0   3.9e-07     0.001       7      29 ..     397     419 ..     392     438 .. 0.93

  Alignments for each domain:
  == domain 1  score: 18.8 bits;  conditional E-value: 3.9e-07
                 EESSTTHHHHHHHHHHHTTSEEE CS
         ACT   7 vpDrPGlLarvfgaladrgiNid 29 
                  ++ PG+L+++++++++rgiNi+
  KOO22549.1 397 NQNIPGVLGAITTLMGQRGINIA 419
                 6899******************7 PP

>> DUF1350  Protein of unknown function (DUF1350)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   4.4e-05      0.11      42      97 ..     262     320 ..     249     326 .. 0.83
   2 ?   -3.9   0.0       2.6   6.7e+03     183     206 ..     363     386 ..     353     390 .. 0.65

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 4.4e-05
     DUF1350  42 elgeagyvviatpfvntldhqaiarsvlnkleiilerlq.krgelt..kallpvyglgh 97 
                  +++++yv +  p++  + h+ai+  vl k++ + + l+  rge+   +all +y  gh
  KOO22549.1 262 VFSKSDYVSVNMPYIKGVTHGAISAAVLAKMKPTCHLLNfARGEIVdgQALLQLYENGH 320
                 468999**************************999998635777752256888888888 PP

  == domain 2  score: -3.9 bits;  conditional E-value: 2.6
     DUF1350 183 rkilrakfadlvtalklpgnhltp 206
                 + i   +++ ++  +++p +hl+p
  KOO22549.1 363 QVINFLETGSIINSVNFPTAHLAP 386
                 344445677788888888888877 PP

>> GFO_IDH_MocA  Oxidoreductase family, NAD-binding Rossmann fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.1       4.4   1.1e+04      33      47 ..      48      62 ..      24      72 .. 0.50
   2 ?   11.7   0.0   0.00014      0.35       3      87 ..     211     293 ..     209     299 .. 0.88

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 4.4
                  CSSHHHHHHHHHHTT CS
  GFO_IDH_MocA 33 dpdaeraeavaesfg 47
                     a++aea  ++f+
    KOO22549.1 48 AAAAAAAEAGGNRFQ 62
                  222222333344444 PP

  == domain 2  score: 11.7 bits;  conditional E-value: 0.00014
                   EEEETTSHHHHHHHHHHHHTTTTEEEEEEECSSHHHHHHHHHHTTHEEESSHHHHHTCTTESEEEE-S-G...GGHHHHHHHHHHTT- CS
  GFO_IDH_MocA   3 vaiiGaGkigskhlrplnesqrleevvalldpdaeraeavaesfgveaysdleelladpeidavivatpn...gtheelakaaleagk 87 
                    +i+G+G+ig + +++  +   + +vv+ +dp+ +   a + s +ve +++le++++  + d+v+v +p     th ++  a+l++ k
    KOO22549.1 211 LGICGLGNIGAMVAESALAL--GMKVVG-YDPKLSVDAAWRLSSKVERCDSLEDVFS--KSDYVSVNMPYikgVTHGAISAAVLAKMK 293
                   69************999888..889997.99999999999*****************..89********9887778888888877655 PP

>> K_channel_TID  Potassium channel Kv1.4 tandem inactivation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.9   9.5    0.0008       2.1      25      49 ..      35      58 ..      22      61 .. 0.88

  Alignments for each domain:
  == domain 1  score: 8.9 bits;  conditional E-value: 0.0008
  K_channel_TID 25 ararererlahsraaaaaavaaaaa 49
                   a+a+ere la +raaaaaa+a+a++
     KOO22549.1 35 AKAQERE-LAAARAAAAAAAAEAGG 58
                   7889998.6799*********9985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (488 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       655  (0.036533); expected 358.6 (0.02)
Passed bias filter:                      491  (0.0273858); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.54u 0.27s 00:00:00.81 Elapsed: 00:00:00.44
# Mc/sec: 3348.19
//
Query:       KOO22550.1  [L=830]
Description: swi snf matrix actin dependent regulator of subfamily member 5 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.2e-40  138.5   0.0    6.8e-40  136.8   0.0    1.7  2  SNF2_N      SNF2 family N-terminal domain
    2.3e-15   56.9   0.0    7.6e-15   55.2   0.0    1.8  2  Helicase_C  Helicase conserved C-terminal domain
    1.8e-06   28.1   0.0    4.1e-06   26.9   0.0    1.6  2  ResIII      Type III restriction enzyme, res subunit
  ------ inclusion threshold ------
      0.016   13.9   1.8        0.1   11.2   0.0    2.3  2  DUF3138     Protein of unknown function (DUF3138)


Domain annotation for each model (and alignments):
>> SNF2_N  SNF2 family N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  136.8   0.0   1.5e-43   6.8e-40      40     239 ..      34     214 ..      23     228 .. 0.84
   2 ?   -1.6   0.0      0.19   8.6e+02     331     349 ..     220     238 ..     211     239 .. 0.75

  Alignments for each domain:
  == domain 1  score: 136.8 bits;  conditional E-value: 1.5e-43
                 .........HHHHHTT--EEE---TTS--HHHHHHHHH...HHTTTS---.......S-EEEE--HHHHHHHHHHHHHH-TTS-EEE--SSHHHH---- CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
      SNF2_N  40 atgevveesaeakqsvrGGiLaDemGLGKTvqvlalilaqrakeekdkekkrkdtlagptLivvPaslldqWeneierhvsssalrvlvyggqkkmkkk 138
                 +++e v+  + +++   GGiL DemGLGKT+q+la++  ++a             l gp+L+v P ++l++W ne++r++++ +   ++++ +  ++ +
  KOO22550.1  34 YQCEGVNWLLAQYAVGTGGILGDEMGLGKTIQTLAFLSRLKA-----------AGLPGPHLVVTPLAVLQNWANELKRFTPELSFVKIYGSAS--ERDR 119
                 55666666667778889*********************3333...........35679*************************9844444444..4555 PP

                 -------------EEEE-HHHHHHHT......TTS-S-S-SEEEES-GGGT--TTSHHHHHHHH---S-EEEE-S--SSS-HHHHHHHHHHH-TTTT-- CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
      SNF2_N 139 ntkvapklladydvvittYdvlsreaelqkkrsvlkqvewkrvvlDEghtlknstskaaeavskLstsnrwiltGTPiqnsledlygLlkfLreepfge 237
                   + a+ ++a+ydv +ttYd+l+ e ++++     ++   + + +DEgh+lkn++s++   + +L    r++ltGTP+qn+l++l++Ll+++ ++ +++
  KOO22550.1 120 LLHSAAVVQAEYDVYLTTYDTLRAEEAFFT-----EAFLFHTITIDEGHRLKNEASSLCASLARLPIPFRLLLTGTPLQNNLHELWALLSYILPGTLSS 213
                 5688999****************8885443.....344568899**************************************************99984 PP

                 HH CS
                 xx RF
      SNF2_N 238 kq 239
                  +
  KOO22550.1 214 -E 214
                 .3 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 0.19
                 H-HHHHHHHHHHHHH---X CS
                 xxxxxxxxxxxxxxxxxxx RF
      SNF2_N 331 ekilelllelrqacnhpql 349
                 +++ + l++l+++cnhp++
  KOO22550.1 220 ARLQSRLMQLQKVCNHPKA 238
                 45667899********986 PP

>> Helicase_C  Helicase conserved C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.0       1.1   4.7e+03      39      72 ..     101     137 ..      85     143 .. 0.62
   2 !   55.2   0.0   1.7e-18   7.6e-15       2     111 .]     298     415 ..     297     415 .. 0.90

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 1.1
                 T..TSTEEEESTTSTHHHHHHHHHHHHTTSSS.EEEE CS
  Helicase_C  39 k..gikvavlhgelpqnereeileqfnkgesd.vLia 72 
                 +  ++++++++g+ + ++r+   ++  + e+d +L +
  KOO22550.1 101 FtpELSFVKIYGSASERDRLLHSAAVVQAEYDvYLTT 137
                 2347889999996666655544444447888844443 PP

  == domain 2  score: 55.2 bits;  conditional E-value: 1.7e-18
                 HHHHHHHHH.HHTTTTSEEEEEESSHHHHHH.HHHHHHHT...TSTEEEESTTSTHHHHHHHHHHHH...TTSSSEEEESGGGTSSSTSTTESEEEESS CS
  Helicase_C   2 kleallell.kleeeggkilifvntidrlek.vklllekk...gikvavlhgelpqnereeileqfn...kgesdvLiatdvaerGidipkvnlVinfd 92 
                 kl++l +ll   ++ g+++lif++++ +l+   +++  +    g  + +l+g+++   re  +++fn   ++ + +Li+t+++++Gi++  +++V+ +d
  KOO22550.1 298 KLAMLDRLLvRCKAAGSRALIFSQYTLSLDVlEEYVADRWgarGRAYFRLDGTTNRIAREMDMRSFNapgSEAFLYLISTRAGGQGINLATADVVVLYD 396
                 7788889988899**************99877777755558889***********************765566779*********************** PP

                 SSSSHHHHHHHHTTSSSTT CS
  Helicase_C  93 lprnvtsyiqriGRtgRag 111
                  ++n++   q+ +R++R+g
  KOO22550.1 397 TCYNPQVDLQAQDRAHRIG 415
                 *****************97 PP

>> ResIII  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.9   0.0   9.2e-10   4.1e-06       3     169 ..      30     191 ..      28     193 .. 0.80
   2 ?   -3.8   0.0       2.5   1.1e+04     122     147 ..     724     749 ..     693     756 .. 0.64

  Alignments for each domain:
  == domain 1  score: 26.9 bits;  conditional E-value: 9.2e-10
                 EE-HHHHHHHHHHT......TTSEEEEEESTTSTHHHHHHHHHHHH-S.....-EEEEESSHHHHHHHHHHGGGGTGG....GEEEESSS-B--..... CS
      ResIII   3 elreyQeeaienlleklkskrdkrglikmaTGtGKTlvaaklierllkkgkeekflflvprkslleqtleefkkflseaykeigkkvsgdkkka....k 97 
                 +lr yQ e ++ ll+++     + g++  + G GKT+  +++  rl+ +g      ++v  +++l+ + +e+k+f++e    ++   s  ++++     
  KOO22550.1  30 QLRAYQCEGVNWLLAQY--AVGTGGILGDEMGLGKTIQTLAFLSRLKAAGL-PGPHLVVTPLAVLQNWANELKRFTPELSF-VKIYGSASERDRllhsA 124
                 79999999999999998..599999**********************9866.5666667779***************9863.33333333333366677 PP

                 ......-SEEEEEHHHHHHTH........HHHTTT-S..EEEEETGGGTTS.T.TTHHHHHT---SEEEEEESS- CS
      ResIII  98 ekdstnkkilvttiqsldadseeeeeeseellrdrfd..viiiDEaHrlgakk.swreilekfkeavllglTATp 169
                 +  + + ++++tt+++l a++         +  ++f+   i iDE Hrl+ ++ s  + l  ++  ++l lT+Tp
  KOO22550.1 125 AVVQAEYDVYLTTYDTLRAEE--------AFFTEAFLfhTITIDEGHRLKNEAsSLCASLARLPIPFRLLLTGTP 191
                 788999**************9........77777777779**********95223333377778899999***99 PP

  == domain 2  score: -3.8 bits;  conditional E-value: 2.5
                 .....HHHTTT-SEEEEETGGGTTS. CS
      ResIII 122 eeeseellrdrfdviiiDEaHrlgak 147
                 +++ e++   + + ++  EaH ++ +
  KOO22550.1 724 TKAAEKAAAAEAKQVVKEEAHAAKTA 749
                 44455555555556666677766654 PP

>> DUF3138  Protein of unknown function (DUF3138)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.9   0.7     0.029   1.3e+02      36      78 ..     221     262 ..     201     288 .. 0.66
   2 ?   11.2   0.0   2.3e-05       0.1     348     434 ..     387     472 ..     349     481 .. 0.86

  Alignments for each domain:
  == domain 1  score: 0.9 bits;  conditional E-value: 0.029
     DUF3138  36 alqrqvkelraalaaakaaaGgkissqkaaaaaaaaaeaaaal 78 
                 +lq ++ +l++  +  ka a + i   +aaaaa +aa a +++
  KOO22550.1 221 RLQSRLMQLQKVCNHPKAIALT-IDRDRAAAAAKHAAAAGSSF 262
                 4566666666666666665555.55555555555555544444 PP

  == domain 2  score: 11.2 bits;  conditional E-value: 2.3e-05
     DUF3138 348 veadatytlddiqynaevdyGqqqkaafnGGsaqwyGlsllghrkfttsvlGrmGatlrydylnnaknGGGGgGlalgsngldgadG 434
                 + ad+   l d+ yn +vd   q +a   G + q     l++   f+  vl r    l  d l   k G GG+G+al +++ +g +G
  KOO22550.1 387 ATADVV-VLYDTCYNPQVDLQAQDRAHRIGQTKQVKIYRLISPSTFEERVLLRARQKLLLDALVIKKAGEGGAGVALLEAADEGDEG 472
                 566664.567899*******9999999999999999999*************************************98887777666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (830 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       866  (0.0483016); expected 358.6 (0.02)
Passed bias filter:                      557  (0.031067); expected 358.6 (0.02)
Passed Vit filter:                        51  (0.00284455); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.70u 0.30s 00:00:01.00 Elapsed: 00:00:00.45
# Mc/sec: 5532.65
//
Query:       KOO22551.1  [L=188]
Description: hypothetical protein Ctob_000075 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.2e-05   24.7   0.0    3.1e-05   24.2   0.0    1.2  1  p25-alpha  p25-alpha


Domain annotation for each model (and alignments):
>> p25-alpha  p25-alpha
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.2   0.0   1.7e-09   3.1e-05      16      79 ..     112     175 ..      91     184 .. 0.84

  Alignments for each domain:
  == domain 1  score: 24.2 bits;  conditional E-value: 1.7e-09
   p25-alpha  16 tgkemdnknfsKlckDckiidkkvtstdvDiiFsKvkaksarkitfeqfkealeelaekkfkkk 79 
                 +g+ m+   f Kl++ +++ ++ +t  dvD+iF++v      ++++ +++  l+++a++ ++++
  KOO22551.1 112 SGARMTALGFRKLVRAAQLTCERCTDVDVDLIFQQVVRTRGARMSMGDMMVGLSMVAKRLYPEE 175
                 7899*****************************************************9988765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (188 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       428  (0.0238719); expected 358.6 (0.02)
Passed bias filter:                      380  (0.0211947); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.26s 00:00:00.65 Elapsed: 00:00:00.40
# Mc/sec: 1425.85
//
Query:       KOO22552.1  [L=213]
Description: hypothetical protein Ctob_000074 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.19   11.5   0.0       0.28   10.9   0.0    1.2  1  DUF3016   Protein of unknown function (DUF3016)
        3.4    7.7  11.4        1.7    8.7   7.3    2.1  2  DUF2109   Predicted membrane protein (DUF2109)


Domain annotation for each model (and alignments):
>> DUF3016  Protein of unknown function (DUF3016)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   3.2e-05      0.28      25      69 ..     148     192 ..     142     208 .. 0.87

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 3.2e-05
     DUF3016  25 rarervlaeLeealeklaekaLpegqkLevevtDvdlAGdvepwr 69 
                 r  ++++++++e +++ a+++Lp+  +++v+v +++  G++ pw 
  KOO22552.1 148 RPFNALFEQVQELVQQAAAEVLPQFSTVTVDVEELRGDGRLPPWS 192
                 5567899***********************************997 PP

>> DUF2109  Predicted membrane protein (DUF2109)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.4   0.1     0.074   6.6e+02      15      32 ..      16      33 ..      13      37 .. 0.82
   2 ?    8.7   7.3   0.00019       1.7       3      60 ..      48     108 ..      46     116 .. 0.87

  Alignments for each domain:
  == domain 1  score: 0.4 bits;  conditional E-value: 0.074
     DUF2109 15 rilleknraekLlylnvl 32
                r ++  + +  Lly++v+
  KOO22552.1 16 REIVYSSLLISLLYICVI 33
                56677778889*****98 PP

  == domain 2  score: 8.7 bits;  conditional E-value: 0.00019
     DUF2109   3 liigiiailaairilleknraekLlylnvlnFaiaal.ialliktpl..gliaAiayFvgs 60 
                 +++ i++++a++ +++++ r+ k+  l v  F+i a+    + k  +  +l+ A a F++s
  KOO22552.1  48 IVLSIVMLYAVVAAIVTNLRVLKIQLLIVRAFGIDATtTPAYAKYRMfwALLYASAIFILS 108
                 6899******************************876156788888766788999999988 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (213 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       757  (0.0422221); expected 358.6 (0.02)
Passed bias filter:                      350  (0.0195214); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.44u 0.21s 00:00:00.65 Elapsed: 00:00:00.40
# Mc/sec: 1612.54
//
Query:       KOO22553.1  [L=261]
Description: hypothetical protein Ctob_000073 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (261 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       684  (0.0381505); expected 358.6 (0.02)
Passed bias filter:                      366  (0.0204139); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.46u 0.24s 00:00:00.70 Elapsed: 00:00:00.42
# Mc/sec: 1866.03
//
Query:       KOO22554.1  [L=99]
Description: hypothetical protein Ctob_000072 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (99 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       249  (0.0138881); expected 358.6 (0.02)
Passed bias filter:                      226  (0.0126053); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.27s 00:00:00.59 Elapsed: 00:00:00.40
# Mc/sec: 747.58
//
Query:       KOO22555.1  [L=360]
Description: hypothetical protein Ctob_000071 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.5e-49  168.1   7.5    2.6e-49  167.4   7.5    1.4  1  TerC      Integral membrane protein TerC family


Domain annotation for each model (and alignments):
>> TerC  Integral membrane protein TerC family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  167.4   7.5   1.4e-53   2.6e-49       2     180 ..     110     311 ..     109     312 .. 0.95

  Alignments for each domain:
  == domain 1  score: 167.4 bits;  conditional E-value: 1.4e-53
        TerC   2 tlvlleivLsiDNlvviallvkk..lpeeqqkkalllGilgAlvlRillillavallelfdlilligglfLlytavkellekr...le.nklvkeekkk 94 
                 t++l+e++Ls+DNl+v+++++++  +p+e+ +++l +Gi+ AlvlR ++i+++va +e f  +ll+++l+L++ ++k+l  ++   l+ n ++k ++  
  KOO22555.1 110 TGFLVEKSLSVDNLFVFLMIFEYfhVPDEYTERVLKWGIMSALVLRGVMIAMGVAAVERFRPVLLLFALILIWSSYKMLQPENdedLSdNAVMKIARWL 208
                 899********************99******************************************************99888884447777777777 PP

        TerC  95 kkktkst.................llavviqielaDlvfslDSvlaavaitsdlfivitavilsilvlrflakllakllerfptlkylalalllligvk 176
                  ++t+++                 +l+v++ iel+D++f++DS++a+v+it+d+fiv+ ++i+++++lr+l+ +lak ++++ +l+++++a+l+++g+k
  KOO22555.1 209 VDATDEYdgdaffttvkgtrratpMLVVLVCIELSDVLFAVDSIPAVVGITHDPFIVYSSNIFALMALRSLYLILAKSVQQLLYLRHAVAAILGFVGMK 307
                 77777778889**************************************************************************************** PP

        TerC 177 lvle 180
                 +v+e
  KOO22555.1 308 MVAE 311
                 *987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (360 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       628  (0.0350271); expected 358.6 (0.02)
Passed bias filter:                      322  (0.0179597); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.27s 00:00:00.72 Elapsed: 00:00:00.42
# Mc/sec: 2580.45
//
Query:       KOO22556.1  [L=768]
Description: pp1-like protein serine threonine phosphatase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.4e-18   68.1   0.0    2.3e-18   67.4   0.0    1.3  1  Metallophos    Calcineurin-like phosphoesterase
     0.0011   19.2   0.0     0.0027   17.9   0.0    1.6  1  Metallophos_2  Calcineurin-like phosphoesterase superfamily d
  ------ inclusion threshold ------
      0.021   13.7   0.1      0.038   12.8   0.1    1.3  1  PIG-S          Phosphatidylinositol-glycan biosynthesis class
      0.068   13.0   0.2        5.8    6.8   0.0    3.4  3  rve_3          Integrase core domain


Domain annotation for each model (and alignments):
>> Metallophos  Calcineurin-like phosphoesterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.4   0.0   5.2e-22   2.3e-18       2     203 ..     181     387 ..     181     388 .. 0.78

  Alignments for each domain:
  == domain 1  score: 67.4 bits;  conditional E-value: 5.2e-22
                  EEEEEESBTBTTCCTHHHHHHHHHHHH..HHHTTESEEEEESTSSSSSHHHHHHHHH.HHHHHHH.TSEEEEEC-TTS.............CHHHHHH CS
  Metallophos   2 rilvigDlHlalgggqlddllkllddl..lreekpdlvllaGDlvdrgdlekellel.laalvky.pipvylllGNHe.............gfeeell 82 
                  r++++gD+H     gql+d+l +l     ++  +++++   GD+ drg+  +e+  l l + v   p  v++++GNHe             gf++e+l
   KOO22556.1 181 RLIIVGDTH-----GQLQDALHILLTHgkPSATNRYIFN--GDIADRGPNACEIFVLvLLFNV-CcPGSVVVTRGNHEardinerpassggGFRDEVL 270
                  6789*****.....**********555334447788888..*******999999999444444.369***********************99999*** PP

                  HHHHHHHHHHHHHEHHHCEEETSEEEEEETTEEEEEEEESE.CEEE.THHHHHHHHHHHSCHHHHCC.........HHHHHHHHHHTTCSEEEEEESS CS
  Metallophos  83 nkygylgifsepwrsdaevfnnlplaslgsgslkvlllhGg.spel.lvsldklgslnleleapepg.........dewlkdlekrekadwvivlgHs 169
                   ky+      ++++ ++  fn+lp+a+ +++  ++ ++hGg s ++  + l  l++ ++  ++p+           d +++d                
   KOO22556.1 271 TKYD-----DDTFELFQLLFNHLPVAAVVGT--QIMVIHGGlS-RErADPLAALRRMKYKIDVPQRPgtaaetllfDSLWSD---------------- 344
                  **99.....5667777999************..********53.33433344444444433333333566668899999999................ PP

                  ESS.........CSSSCSCCHHHHHHHHHHTTESEEEEESSSS CS
  Metallophos 170 ply.........rgsgylfgdealedllkkygvdlvisGHtHv 203
                  p++               +g+++++++l+  g++lv+++H+ +
   KOO22556.1 345 PMEddgiqsggrGDDTIKWGPDVTDEFLEASGLQLVVRSHQVP 387
                  555555556665556799**********************865 PP

>> Metallophos_2  Calcineurin-like phosphoesterase superfamily domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.9   0.0   6.1e-07    0.0027       2     100 ..     181     304 ..     181     325 .. 0.60

  Alignments for each domain:
  == domain 1  score: 17.9 bits;  conditional E-value: 6.1e-07
  Metallophos_2   2 klaiiSDlHsnl.daleavlealkevgvdaiihaGDleeeepevleellela........pvlaVrGNnDeevveedvlreaaelgtdl......p 82 
                    +l+i+ D+H++l dal  +l++ k  + ++ i+ GD+ ++ p+++e +  ++         v++ rGN++    ++d+ +++a  g+ +      +
     KOO22556.1 181 RLIIVGDTHGQLqDALHILLTHGKPSATNRYIFNGDIADRGPNACEIFVLVLlfnvccpgSVVVTRGNHE----ARDINERPASSGGGFrdevltK 272
                    689******6551567777999999************66666555544444455566*9999999*****....4444444444444442222442 PP

  Metallophos_2  83 .eeaelel.............agekvlliHgd 100
                     +++++el              g+++ +iHg 
     KOO22556.1 273 yDDDTFELfqllfnhlpvaavVGTQIMVIHGG 304
                    23333333333333333333344556666665 PP

>> PIG-S  Phosphatidylinositol-glycan biosynthesis class S protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.1   8.5e-06     0.038     154     231 ..      26      98 ..       8     101 .. 0.75

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 8.5e-06
       PIG-S 154 vaeelvelfleeeeealisasksellstskrttrsikysptyhLsfsllnedpepssWdieaaleeylsplldaLspi 231
                  a el e++ + e+  +i++s+++ l+       ++ ++ t +Ls+s l+e+p++ +W ie+ ++ y++ ll++++ i
  KOO22556.1  26 AAPELKEHTENFESFNMIEQSDEKSLQ----AADKVLANMTARLSISSLEEEPDDDEWTIEDKIR-YMRSLLEEMRTI 98 
                 555666666555433333333333333....47999****************************9.********9987 PP

>> rve_3  Integrase core domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.0      0.63   2.8e+03      33      50 ..     433     450 ..     430     452 .. 0.81
   2 ?    6.8   0.0    0.0013       5.8       4      47 ..     473     515 ..     470     520 .. 0.82
   3 ?    1.9   0.0     0.042   1.9e+02      16      32 ..     615     631 ..     613     648 .. 0.80

  Alignments for each domain:
  == domain 1  score: -1.8 bits;  conditional E-value: 0.63
       rve_3  33 eelfrslaearekleawr 50 
                 e+   sl+++r+++++++
  KOO22556.1 433 EHMAASLEDLRKATDEAI 450
                 666789********9987 PP

  == domain 2  score: 6.8 bits;  conditional E-value: 0.0013
       rve_3   4 elsyiapgkPqqNglvEsfngtlrdellneelfrslaearekle 47 
                 e ++i+  +   ++ +E+ + +l+dell++  +  ++e+++ l 
  KOO22556.1 473 ERNMIKGWHSRAQANAERRQAKLKDELLKRVTM-EVHEVERSLG 515
                 567899999999****************99887.7777777665 PP

  == domain 3  score: 1.9 bits;  conditional E-value: 0.042
       rve_3  16 NglvEsfngtlrdelln 32 
                  +++E+f+  +rd    
  KOO22556.1 615 EAFIERFHVEMRDPSMA 631
                 589*********97665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (768 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       755  (0.0421105); expected 358.6 (0.02)
Passed bias filter:                      537  (0.0299515); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.70u 0.27s 00:00:00.97 Elapsed: 00:00:00.45
# Mc/sec: 5147.33
//
Query:       KOO22557.1  [L=430]
Description: hypothetical protein Ctob_000079 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.049   13.2   0.2       0.14   11.8   0.2    1.8  1  EF-hand_1  EF hand
       0.18   11.8   0.1       0.49   10.5   0.1    1.6  1  EF-hand_6  EF-hand domain


Domain annotation for each model (and alignments):
>> EF-hand_1  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.2   1.5e-05      0.14      10      26 ..     259     275 ..     256     278 .. 0.90

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 1.5e-05
                 TTTSSSEEEHHHHHHHH CS
   EF-hand_1  10 DkDgdGkIdfeEfkell 26 
                 D+D+dGk+d++E + +l
  KOO22557.1 259 DVDQDGKLDLQEIVYVL 275
                 9***********99887 PP

>> EF-hand_6  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.1   5.5e-05      0.49       9      27 ..     258     276 ..     254     280 .. 0.90

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 5.5e-05
   EF-hand_6   9 fDkdgdGkidaeElrkalr 27 
                 +D+d dGk+d +E++ +l 
  KOO22557.1 258 WDVDQDGKLDLQEIVYVLD 276
                 7*************99885 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (430 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       537  (0.0299515); expected 358.6 (0.02)
Passed bias filter:                      290  (0.0161749); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.48u 0.25s 00:00:00.73 Elapsed: 00:00:00.43
# Mc/sec: 3013.56
//
Query:       KOO22558.1  [L=452]
Description: stress-inducible protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    6.6e-23   80.5   3.0    5.4e-10   39.3   0.5    3.9  4  Ank_5       Ankyrin repeats (many copies)
    1.9e-19   70.0   5.1    6.2e-12   45.9   0.7    3.2  3  Ank_2       Ankyrin repeats (3 copies)
    2.1e-17   63.2   0.5      6e-09   36.3   0.2    3.1  3  Ank_4       Ankyrin repeats (many copies)
    6.8e-15   53.9   4.0    0.00031   20.6   0.6    3.9  3  TPR_2       Tetratricopeptide repeat
    2.4e-14   53.0   2.3    2.8e-05   24.3   0.2    3.8  3  Ank         Ankyrin repeat
    1.7e-13   49.4   0.0     0.0077   16.7   0.0    4.5  4  Ank_3       Ankyrin repeat
    3.9e-12   45.4   2.6    2.4e-05   24.0   0.9    3.6  3  TPR_1       Tetratricopeptide repeat
    8.1e-10   38.2   4.1    0.00068   19.3   0.1    3.0  3  TPR_11      TPR repeat
    1.4e-08   34.2   2.5        0.1   12.9   0.8    4.2  4  TPR_8       Tetratricopeptide repeat
    7.9e-07   29.6   3.5    8.6e-05   23.1   0.2    3.2  3  TPR_16      Tetratricopeptide repeat
    1.5e-06   28.6   5.9      0.018   15.8   0.2    4.4  4  TPR_14      Tetratricopeptide repeat
    4.2e-06   27.2   1.9      0.071   13.6   0.0    3.2  2  TPR_19      Tetratricopeptide repeat
     0.0012   19.0   1.2        2.3    8.8   0.1    3.5  3  TPR_17      Tetratricopeptide repeat
     0.0071   16.4   0.1       0.49   10.5   0.0    3.2  3  Fis1_TPR_C  Fis1 C-terminal tetratricopeptide repeat
     0.0085   16.4   1.4       0.46   10.8   0.1    2.6  2  TPR_12      Tetratricopeptide repeat
  ------ inclusion threshold ------
      0.012   14.6   7.7      0.018   14.1   7.7    1.3  1  DEC-1_N     DEC-1 protein, N-terminal region
      0.074   13.0   1.5         15    5.6   0.0    3.5  3  TPR_10      Tetratricopeptide repeat
       0.18   11.6   0.5       0.44   10.3   0.5    1.7  1  SAP         SAP domain


Domain annotation for each model (and alignments):
>> Ank_5  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.8   0.1   1.5e-06    0.0015      18      39 ..      27      48 ..      15      53 .. 0.81
   2 !   39.3   0.5   5.5e-13   5.4e-10       1      56 []      44      98 ..      44      98 .. 0.97
   3 ?    0.2   0.0      0.99   9.9e+02      22      39 ..      97     114 ..      97     118 .. 0.83
   4 !   24.4   0.0   2.6e-08   2.6e-05      18      52 ..     362     396 ..     351     400 .. 0.91

  Alignments for each domain:
  == domain 1  score: 18.8 bits;  conditional E-value: 1.5e-06
       Ank_5 18 tpLhvAakygaadvvrlLlarg 39
                t+Lh+Aa++g+a+++++Ll++g
  KOO22558.1 27 TALHWAASKGYASLAKWLLDEG 48
                9******************544 PP

  == domain 2  score: 39.3 bits;  conditional E-value: 5.5e-13
       Ank_5  1 LlehgpadvnrldgggntpLhvAakygaadvvrlLlargadlnltdsrGltaldlA 56
                Ll++g  +vn+ ++   tpLh+A+ +g + vv++Ll  g+d++l + + +ta+d+A
  KOO22558.1 44 LLDEG-HNVNAINNANSTPLHTASQNGQSAVVNMLLSAGCDTKLVNTDDQTAYDVA 98
                89999.99**********************************************99 PP

  == domain 3  score: 0.2 bits;  conditional E-value: 0.99
       Ank_5  22 vAakygaadvvrlLlarg 39 
                 vA+++g+++++r++ + g
  KOO22558.1  97 VAVEKGHSQIARNIAEAG 114
                 699*********987555 PP

  == domain 4  score: 24.4 bits;  conditional E-value: 2.6e-08
       Ank_5  18 tpLhvAakygaadvvrlLlargadlnltdsrGlta 52 
                 ++Lh A++ g a  v++Ll++gad++l++++G+t+
  KOO22558.1 362 EVLHSACSSGQAFSVEWLLKHGADATLKNDDGETP 396
                 79********************************9 PP

>> Ank_2  Ankyrin repeats (3 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.0   0.1   3.8e-07   0.00038      53      81 ..      25      53 ..       4      55 .. 0.84
   2 !   45.9   0.7   6.2e-15   6.2e-12       1      78 [.      29     116 ..      29     120 .. 0.89
   3 !   19.3   0.0   1.3e-06    0.0013      27      69 ..     361     409 ..     338     413 .. 0.77

  Alignments for each domain:
  == domain 1  score: 21.0 bits;  conditional E-value: 3.8e-07
       Ank_2 53 grtpLhyAarsghleivklLlekgadinl 81
                g+t+Lh+Aa++g+  ++k+Ll+ g ++n+
  KOO22558.1 25 GHTALHWAASKGYASLAKWLLDEGHNVNA 53
                9********************99999997 PP

  == domain 2  score: 45.9 bits;  conditional E-value: 6.2e-15
       Ank_2   1 LhlAakngnlelvklLl.egadpn..k.ngktaLhyAakngnleivklLleh......adndgrtpLhyAarsghleivklLlekgad 78 
                 Lh+Aa++g+ +l k+Ll eg+++n  +  + t+Lh+A +ng+  +v +Ll++      ++ d +t+  +A+++gh++i++   e ga+
  KOO22558.1  29 LHWAASKGYASLAKWLLdEGHNVNaiNnANSTPLHTASQNGQSAVVNMLLSAgcdtklVNTDDQTAYDVAVEKGHSQIARNIAEAGAQ 116
                 8******9899*********99998635789***********99******9666667877999****************998888876 PP

  == domain 3  score: 19.3 bits;  conditional E-value: 1.3e-06
       Ank_2  27 ktaLhyAakngnleivklLleh......adndgrtpLhyAarsghleiv 69 
                 + +Lh A+++g+   v++Ll+h       ++dg+tp  +A ++g+ +++
  KOO22558.1 361 REVLHSACSSGQAFSVEWLLKHgadatlKNDDGETPSAVATKKGRKDLA 409
                 5789999999966569999998866554448999999999999987765 PP

>> Ank_4  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.3   0.2   6.1e-12     6e-09       2      55 .]      26      78 ..      25      78 .. 0.97
   2 ?    2.1   0.0      0.32   3.2e+02      17      51 ..      74     107 ..      73     108 .. 0.83
   3 !   23.1   0.0   8.1e-08   8.1e-05       2      48 ..     361     406 ..     360     410 .. 0.86

  Alignments for each domain:
  == domain 1  score: 36.3 bits;  conditional E-value: 6.1e-12
       Ank_4  2 ltaLhyaaisgrlelvrlLlekgadinaqdnrsGetalhiAakrgnveilklLl 55
                +taLh+aa++g   l+++Ll+ g ++na  n+   t+lh A ++g+  ++ +Ll
  KOO22558.1 26 HTALHWAASKGYASLAKWLLDEGHNVNAI-NNANSTPLHTASQNGQSAVVNMLL 78
                79**************************8.*********************997 PP

  == domain 2  score: 2.1 bits;  conditional E-value: 0.32
       Ank_4  17 vrlLlekgadinaqdnrsGetalhiAakrgnveil 51 
                 v  Ll+ g d   + n +++ta + A+ +g+ +i+
  KOO22558.1  74 VNMLLSAGCDTKLV-NTDDQTAYDVAVEKGHSQIA 107
                 66788889996666.9999************9987 PP

  == domain 3  score: 23.1 bits;  conditional E-value: 8.1e-08
       Ank_4   2 ltaLhyaaisgrlelvrlLlekgadinaqdnrsGetalhiAakrgnv 48 
                 +++Lh+a++sg+  +v++Ll +gad     n++Get+   A k+g++
  KOO22558.1 361 REVLHSACSSGQAFSVEWLLKHGADATLK-NDDGETPSAVATKKGRK 406
                 689**********************8887.******96666666665 PP

>> TPR_2  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.9   0.1   1.1e-06    0.0011       5      34 .]     249     278 ..     245     278 .. 0.92
   2 !   13.1   0.0     8e-05      0.08       4      33 ..     282     311 ..     280     312 .. 0.94
   3 !   20.6   0.6   3.2e-07   0.00031       1      34 []     313     346 ..     313     346 .. 0.96

  Alignments for each domain:
  == domain 1  score: 18.9 bits;  conditional E-value: 1.1e-06
       TPR_2   5 ynlGlayyklgdyeeAleafekAleldPnn 34 
                  +lG+ ++ +gdy  A+++f +A++l P+n
  KOO22558.1 249 KALGNDAFGRGDYTAAVKHFGAAIRLTPKN 278
                 579*************************97 PP

  == domain 2  score: 13.1 bits;  conditional E-value: 8e-05
       TPR_2   4 lynlGlayyklgdyeeAleafekAleldPn 33 
                 + n+  a++ lg+  eAl + +++++l+P+
  KOO22558.1 282 YSNRSGAHASLGNASEALSDANECIKLAPD 311
                 889999***********************8 PP

  == domain 3  score: 20.6 bits;  conditional E-value: 3.2e-07
       TPR_2   1 aealynlGlayyklgdyeeAleafekAleldPnn 34 
                 a+++ + G a++ +g+y++A +a+++ l+++P+n
  KOO22558.1 313 AKGYSRKGAALILKGEYKDAMKAYKAGLAIEPQN 346
                 6899****************************97 PP

>> Ank  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.3   0.2   2.8e-08   2.8e-05       2      32 .]      25      56 ..      24      56 .. 0.94
   2 !   14.7   0.0   3.1e-05     0.031       4      27 ..      60      84 ..      58      92 .. 0.84
   3 !   11.5   0.0   0.00032      0.32       6      31 ..     364     390 ..     363     391 .. 0.91

  Alignments for each domain:
  == domain 1  score: 24.3 bits;  conditional E-value: 2.8e-08
                SBBHHHHHHHHTTHHHHHHHH.TTTSTTCBTT CS
         Ank  2 GnTPLHlAatngkkriiklLL.hGAnlnaldn 32
                G+T+LH+Aa+ g ++ +k+LL  G n+na +n
  KOO22558.1 25 GHTALHWAASKGYASLAKWLLdEGHNVNAINN 56
                9*********9**********77******987 PP

  == domain 2  score: 14.7 bits;  conditional E-value: 3.1e-05
                BHHHHHHHHTTHHHHHHHH.TTTST CS
         Ank  4 TPLHlAatngkkriiklLL.hGAnl 27
                TPLH A++ng+  ++ +LL  G++ 
  KOO22558.1 60 TPLHTASQNGQSAVVNMLLsAGCDT 84
                9******************669884 PP

  == domain 3  score: 11.5 bits;  conditional E-value: 0.00032
                 HHHHHHHTTHHHHHHHH.TTTSTTCBT CS
         Ank   6 LHlAatngkkriiklLL.hGAnlnald 31 
                 LH A++ g++  +++LL hGA+ ++++
  KOO22558.1 364 LHSACSSGQAFSVEWLLkHGADATLKN 390
                 9****99**************988877 PP

>> Ank_3  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.0   7.8e-06    0.0077       2      31 .]      25      53 ..      25      53 .. 0.92
   2 !   13.7   0.0   7.4e-05     0.073       3      28 ..      59      83 ..      57      85 .. 0.92
   3 ?   -0.1   0.0       2.2   2.2e+03       3      26 ..      92     114 ..      90     117 .. 0.81
   4 !   12.7   0.0   0.00015      0.15       5      29 ..     363     386 ..     360     388 .. 0.88

  Alignments for each domain:
  == domain 1  score: 16.7 bits;  conditional E-value: 7.8e-06
       Ank_3  2 GetpLhlAarsgnleivkfLlenkgadvna 31
                G t+Lh+Aa+ g  +++k+Ll+  g +vna
  KOO22558.1 25 GHTALHWAASKGYASLAKWLLD-EGHNVNA 53
                78********************.7888885 PP

  == domain 2  score: 13.7 bits;  conditional E-value: 7.4e-05
       Ank_3  3 etpLhlAarsgnleivkfLlenkgad 28
                 tpLh+A  +g  ++v +Ll   g+d
  KOO22558.1 59 STPLHTASQNGQSAVVNMLLS-AGCD 83
                6********************.8988 PP

  == domain 3  score: -0.1 bits;  conditional E-value: 2.2
       Ank_3   3 etpLhlAarsgnleivkfLlenkg 26 
                 +t+  +A++ g+  i++ + e  g
  KOO22558.1  92 QTAYDVAVEKGHSQIARNIAE-AG 114
                 789999*******99988877.45 PP

  == domain 4  score: 12.7 bits;  conditional E-value: 0.00015
       Ank_3   5 pLhlAarsgnl.eivkfLlenkgadv 29 
                  Lh A++sg   + v++Ll+ +gad 
  KOO22558.1 363 VLHSACSSGQAfS-VEWLLK-HGADA 386
                 7**********55.******.9**96 PP

>> TPR_1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.0   0.0   0.00014      0.14       7      34 .]     251     278 ..     249     278 .. 0.93
   2 !    6.9   0.0     0.006       5.9      10      33 ..     288     311 ..     281     311 .. 0.92
   3 !   24.0   0.9   2.4e-08   2.4e-05       1      34 []     313     346 ..     313     346 .. 0.97

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 0.00014
                 HHHHHHHTT-HHHHHHHHHHHHHHSTTH CS
       TPR_1   7 lGnayfklgkydeAleyyekALelnPnn 34 
                 lGn  f  g+y  A++++  A++l P+n
  KOO22558.1 251 LGNDAFGRGDYTAAVKHFGAAIRLTPKN 278
                 89999*******************9987 PP

  == domain 2  score: 6.9 bits;  conditional E-value: 0.006
                 HHHHTT-HHHHHHHHHHHHHHSTT CS
       TPR_1  10 ayfklgkydeAleyyekALelnPn 33 
                 a+ +lg+  eAl + +++++l P+
  KOO22558.1 288 AHASLGNASEALSDANECIKLAPD 311
                 68899******************7 PP

  == domain 3  score: 24.0 bits;  conditional E-value: 2.4e-08
                 HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH CS
       TPR_1   1 akalynlGnayfklgkydeAleyyekALelnPnn 34 
                 ak + ++G+a+  +g+y++A ++y+  L ++P+n
  KOO22558.1 313 AKGYSRKGAALILKGEYKDAMKAYKAGLAIEPQN 346
                 799*****************************97 PP

>> TPR_11  TPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.3   0.1   6.8e-07   0.00068       1      41 [.     252     292 ..     252     295 .. 0.86
   2 ?    1.3   0.0      0.27   2.7e+02       6      40 ..     291     325 ..     287     327 .. 0.80
   3 !   18.9   0.8   8.6e-07   0.00086       1      30 [.     320     349 ..     320     353 .. 0.90

  Alignments for each domain:
  == domain 1  score: 19.3 bits;  conditional E-value: 6.8e-07
      TPR_11   1 GdayyeqGkyeeAieaYkkAlkldPdnaeayynLGlayykq 41 
                 G+  + +G+y++A++++ +A++l+P+n  +y+n+  a++ +
  KOO22558.1 252 GNDAFGRGDYTAAVKHFGAAIRLTPKNYVLYSNRSGAHASL 292
                 6666779********************99999986666655 PP

  == domain 2  score: 1.3 bits;  conditional E-value: 0.27
      TPR_11   6 eqGkyeeAieaYkkAlkldPdnaeayynLGlayyk 40 
                 ++G+  eA+ + ++ +kl Pd a  y+  G+a+  
  KOO22558.1 291 SLGNASEALSDANECIKLAPDWAKGYSRKGAALIL 325
                 6777778888888889999**99999999999865 PP

  == domain 3  score: 18.9 bits;  conditional E-value: 8.6e-07
      TPR_11   1 GdayyeqGkyeeAieaYkkAlkldPdnaea 30 
                 G a+  +G+y++A++aYk+ l++ P+na +
  KOO22558.1 320 GAALILKGEYKDAMKAYKAGLAIEPQNAAL 349
                 557889*********************976 PP

>> TPR_8  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.0       5.7   5.6e+03      23      32 ..     138     147 ..     136     149 .. 0.79
   2 !    7.4   0.0    0.0059       5.9      14      34 .]     258     278 ..     251     278 .. 0.92
   3 !   10.5   0.0   0.00058      0.58       4      33 ..     282     311 ..     280     311 .. 0.91
   4 !   12.9   0.8    0.0001       0.1       1      34 []     313     346 ..     313     346 .. 0.94

  Alignments for each domain:
  == domain 1  score: -1.9 bits;  conditional E-value: 5.7
                 HHHHHHHHHH CS
       TPR_8  23 yyekaleldp 32 
                  +++al+l++
  KOO22558.1 138 EMKQALKLSK 147
                 6899**9986 PP

  == domain 2  score: 7.4 bits;  conditional E-value: 0.0059
                 TT-HHHHHHHHHHHHHHHHH. CS
       TPR_8  14 lgdyeeAkeyyekaleldpdn 34 
                  gdy +A++ +  a++l p+n
  KOO22558.1 258 RGDYTAAVKHFGAAIRLTPKN 278
                 59*****************96 PP

  == domain 3  score: 10.5 bits;  conditional E-value: 0.00058
                 HHHHHHHHHHTT-HHHHHHHHHHHHHHHHH CS
       TPR_8   4 yynlgsiylklgdyeeAkeyyekaleldpd 33 
                 y n + ++ +lg+  eA +  +++++l+pd
  KOO22558.1 282 YSNRSGAHASLGNASEALSDANECIKLAPD 311
                 667788999*******************97 PP

  == domain 4  score: 12.9 bits;  conditional E-value: 0.0001
                 CCHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH. CS
       TPR_8   1 aeayynlgsiylklgdyeeAkeyyekaleldpdn 34 
                 a+ y ++g +++ +g+y+ A+++y+  l ++p+n
  KOO22558.1 313 AKGYSRKGAALILKGEYKDAMKAYKAGLAIEPQN 346
                 577999**************************86 PP

>> TPR_16  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.1   0.2   8.6e-08   8.6e-05       2      59 ..     250     304 ..     249     311 .. 0.86
   2 !   10.0   1.0    0.0011       1.1       6      67 ..     288     346 ..     283     347 .. 0.91
   3 ?    5.4   0.2     0.029        29      10      38 ..     326     351 ..     317     362 .. 0.73

  Alignments for each domain:
  == domain 1  score: 23.1 bits;  conditional E-value: 8.6e-08
      TPR_16   2 alaraalragdyddAaaaleaalkrdpssPdaaeAllllgdaalrqgrlaeAaalyra 59 
                 al+++a+ +gdy++A++ + aa+++    P ++  + ++  a++ +g+  eA+   ++
  KOO22558.1 250 ALGNDAFGRGDYTAAVKHFGAAIRLT---PKNYVLYSNRSGAHASLGNASEALSDANE 304
                 79************************...77777******************955555 PP

  == domain 2  score: 10.0 bits;  conditional E-value: 0.0011
      TPR_16   6 aalragdyddAaaaleaalkrdpssPdaaeAllllgdaalrqgrlaeAaalyraalraapda 67 
                 a++ +g+  +A+  +++ +k++   Pd a  +  +g a+  +g++++A  +y+a l+  p++
  KOO22558.1 288 AHASLGNASEALSDANECIKLA---PDWAKGYSRKGAALILKGEYKDAMKAYKAGLAIEPQN 346
                 78889*****************...****************************988877776 PP

  == domain 3  score: 5.4 bits;  conditional E-value: 0.029
      TPR_16  10 agdyddAaaaleaalkrdpssPdaaeAll 38 
                  g+y dA +a++a l+     P++a+ l 
  KOO22558.1 326 KGEYKDAMKAYKAGLAIE---PQNAALLK 351
                 477888888888888888...87777665 PP

>> TPR_14  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.3       5.8   5.8e+03      19      31 ..     158     170 ..     155     178 .. 0.73
   2 !    9.3   0.0    0.0023       2.3       6      37 ..     250     281 ..     245     286 .. 0.85
   3 ?    3.7   0.0      0.14   1.4e+02       9      35 ..     287     313 ..     281     321 .. 0.86
   4 !   15.8   0.2   1.8e-05     0.018       6      39 ..     318     351 ..     313     353 .. 0.87

  Alignments for each domain:
  == domain 1  score: -1.3 bits;  conditional E-value: 5.8
      TPR_14  19 eAiallrralala 31 
                 e ++llr++l++a
  KOO22558.1 158 ELRQLLREVLDKA 170
                 7789999999864 PP

  == domain 2  score: 9.3 bits;  conditional E-value: 0.0023
      TPR_14   6 alaeallalGdpdeAiallrralalaPddaea 37 
                 al+   + +Gd+ +A++++ +a++l P++ ++
  KOO22558.1 250 ALGNDAFGRGDYTAAVKHFGAAIRLTPKNYVL 281
                 666677889******************99776 PP

  == domain 3  score: 3.7 bits;  conditional E-value: 0.14
      TPR_14   9 eallalGdpdeAiallrralalaPdda 35 
                  a++ lG+  eA+  ++++++laPd a
  KOO22558.1 287 GAHASLGNASEALSDANECIKLAPDWA 313
                 58999*******************965 PP

  == domain 4  score: 15.8 bits;  conditional E-value: 1.8e-05
      TPR_14   6 alaeallalGdpdeAiallrralalaPddaeawl 39 
                 + ++al   G++++A++++++ la  P++a+++ 
  KOO22558.1 318 RKGAALILKGEYKDAMKAYKAGLAIEPQNAALLK 351
                 567899999*********************9875 PP

>> TPR_19  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.6   0.0   7.2e-05     0.071       2      45 ..     256     299 ..     255     316 .. 0.93
   2 !   11.3   0.5   0.00039      0.38       2      31 ..     324     353 ..     323     361 .. 0.90

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 7.2e-05
      TPR_19   2 laegdyaeAlalleqalqedpknaearllLAeallalgqldeAe 45 
                 + +gdy++A++++ +a+   pkn  +  +   a+ +lg+  eA 
  KOO22558.1 256 FGRGDYTAAVKHFGAAIRLTPKNYVLYSNRSGAHASLGNASEAL 299
                 789************************************99996 PP

  == domain 2  score: 11.3 bits;  conditional E-value: 0.00039
      TPR_19   2 laegdyaeAlalleqalqedpknaearllL 31 
                 +  g y +A++++++ l+ +p+na+++ +L
  KOO22558.1 324 ILKGEYKDAMKAYKAGLAIEPQNAALLKGL 353
                 5679*********************99877 PP

>> TPR_17  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.5   0.0     0.013        13       4      33 ..     270     299 ..     267     300 .. 0.88
   2 !    8.8   0.1    0.0023       2.3       3      32 ..     303     332 ..     302     334 .. 0.94
   3 ?   -0.2   0.0       1.7   1.6e+03       2      14 ..     336     348 ..     335     350 .. 0.86

  Alignments for each domain:
  == domain 1  score: 6.5 bits;  conditional E-value: 0.013
      TPR_17   4 kaleldPnnadaynnLAelllknGdlmtAr 33 
                  a++l P+n ++y n+  +++++G+  +A+
  KOO22558.1 270 AAIRLTPKNYVLYSNRSGAHASLGNASEAL 299
                 79**************99999999988875 PP

  == domain 2  score: 8.8 bits;  conditional E-value: 0.0023
      TPR_17   3 lkaleldPnnadaynnLAelllknGdlmtA 32 
                  ++++l P+ a+ y  ++ +l  +G++++A
  KOO22558.1 303 NECIKLAPDWAKGYSRKGAALILKGEYKDA 332
                 58*************************999 PP

  == domain 3  score: -0.2 bits;  conditional E-value: 1.7
      TPR_17   2 ylkaleldPnnad 14 
                 y+  l+++P na 
  KOO22558.1 336 YKAGLAIEPQNAA 348
                 9999*******96 PP

>> Fis1_TPR_C  Fis1 C-terminal tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.0       3.1   3.1e+03      15      34 ..     259     278 ..     256     279 .. 0.90
   2 ?    1.4   0.0      0.34   3.4e+02      10      34 ..     288     312 ..     284     315 .. 0.91
   3 !   10.5   0.0   0.00049      0.49      15      35 ..     327     347 ..     322     354 .. 0.92

  Alignments for each domain:
  == domain 1  score: -1.7 bits;  conditional E-value: 3.1
                 T-HHHHHHHHHHHHHHTTS- CS
  Fis1_TPR_C  15 geYseArryvdalLeiEPen 34 
                 g+Y+ A +   a +++ P+n
  KOO22558.1 259 GDYTAAVKHFGAAIRLTPKN 278
                 89******999999999998 PP

  == domain 2  score: 1.4 bits;  conditional E-value: 0.34
                 HHHHHT-HHHHHHHHHHHHHHTTS- CS
  Fis1_TPR_C  10 GhyklgeYseArryvdalLeiEPen 34 
                 +h+ lg+ seA+  ++ ++++ P++
  KOO22558.1 288 AHASLGNASEALSDANECIKLAPDW 312
                 8999*******************99 PP

  == domain 3  score: 10.5 bits;  conditional E-value: 0.00049
                 T-HHHHHHHHHHHHHHTTS-H CS
  Fis1_TPR_C  15 geYseArryvdalLeiEPenr 35 
                 geY++A++  +a L+iEP+n 
  KOO22558.1 327 GEYKDAMKAYKAGLAIEPQNA 347
                 8******************95 PP

>> TPR_12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.8   0.1   0.00046      0.46       8      76 ..     250     310 ..     244     311 .. 0.87
   2 !    8.4   0.6    0.0025       2.5       5      74 ..     281     342 ..     279     345 .. 0.87

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00046
      TPR_12   8 nlaavlrrlgrydeAlellekaleiarrllGpdhpltattlrnLgrlyralgryeeAlelleealaiae 76 
                  l++  + +g+y+ A +++ +a+++      p+++     + n + ++  lg+  eAl+  +e++++a+
  KOO22558.1 250 ALGNDAFGRGDYTAAVKHFGAAIRLT-----PKNY---VLYSNRSGAHASLGNASEALSDANECIKLAP 310
                 699999****************9888.....7773...47999999999**********9999999875 PP

  == domain 2  score: 8.4 bits;  conditional E-value: 0.0025
      TPR_12   5 alnnlaavlrrlgrydeAlellekaleiarrllGpdhpltattlrnLgrlyralgryeeAlelleealai 74 
                 +++n+  +++ lg+  eAl+  ++++ +a     pd+   a  +   g ++ + g+y++A ++++  lai
  KOO22558.1 281 LYSNRSGAHASLGNASEALSDANECIKLA-----PDW---AKGYSRKGAALILKGEYKDAMKAYKAGLAI 342
                 577899999********************.....**9...666777777777899*******99998887 PP

>> DEC-1_N  DEC-1 protein, N-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   7.7   1.8e-05     0.018     110     149 ..     180     219 ..     101     274 .. 0.74

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 1.8e-05
     DEC-1_N 110 dgllGaaapapalaaapppapapvpddpapapaapqaaaf 149
                  +   ++apapa+a +pp apap ++ pa  p +p+  a 
  KOO22558.1 180 AEPKQNSAPAPAPAPPPPAAPAPPSEAPAEKPPSPPKKAS 219
                 44445569*****999999**********99999976533 PP

>> TPR_10  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.6   0.0     0.015        15       8      31 ..     251     274 ..     249     275 .. 0.92
   2 ?    3.6   0.1     0.065        65       5      30 ..     282     307 ..     280     309 .. 0.91
   3 ?    0.0   0.0      0.86   8.5e+02       9      31 ..     320     342 ..     312     342 .. 0.80

  Alignments for each domain:
  == domain 1  score: 5.6 bits;  conditional E-value: 0.015
      TPR_10   8 LanalrqrgrydeAealleealai 31 
                 L+n  + rg+y++A++++  a+++
  KOO22558.1 251 LGNDAFGRGDYTAAVKHFGAAIRL 274
                 89999*************999975 PP

  == domain 2  score: 3.6 bits;  conditional E-value: 0.065
      TPR_10   5 lnNLanalrqrgrydeAealleeala 30 
                 ++N + a+ ++g+  eA+ ++ e++ 
  KOO22558.1 282 YSNRSGAHASLGNASEALSDANECIK 307
                 789999***************99997 PP

  == domain 3  score: 0.0 bits;  conditional E-value: 0.86
      TPR_10   9 analrqrgrydeAealleealai 31 
                 ++al   g+y++A++ ++  lai
  KOO22558.1 320 GAALILKGEYKDAMKAYKAGLAI 342
                 67777889******999887765 PP

>> SAP  SAP domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.5   0.00045      0.44       3      33 ..     133     165 ..     132     167 .. 0.93

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.00045
                 T--HHHHHHHHHHTT--TTS-..HHHHHHHHHH CS
         SAP   3 kltVaeLKeeLkkrGLptsGk..KaeLieRLke 33 
                 +++Vae K++Lk    +t G+  KaeL + L+e
  KOO22558.1 133 TWKVAEMKQALKLSKVDTDGVseKAELRQLLRE 165
                 79*************************998887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (452 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       738  (0.0411624); expected 358.6 (0.02)
Passed bias filter:                      450  (0.025099); expected 358.6 (0.02)
Passed Vit filter:                        58  (0.00323498); expected 17.9 (0.001)
Passed Fwd filter:                        20  (0.00111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              18  [number of targets reported over threshold]
# CPU time: 0.58u 0.29s 00:00:00.86 Elapsed: 00:00:00.44
# Mc/sec: 3070.29
//
Query:       KOO22559.1  [L=409]
Description: peptidyl-prolyl cis-trans isomerase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
      5e-23   82.1   0.0      9e-23   81.3   0.0    1.3  1  Pro_isomerase  Cyclophilin type peptidyl-prolyl cis-trans iso


Domain annotation for each model (and alignments):
>> Pro_isomerase  Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   81.3   0.0     5e-27     9e-23      12     140 ..     220     379 ..     212     396 .. 0.88

  Alignments for each domain:
  == domain 1  score: 81.3 bits;  conditional E-value: 5e-27
  Pro_isomerase  12 ivieLfadkaPktvenFlklvkegfYdgttFhRvikgfmvqgGdptgktsageqe.kkgge.siraipdEit.s...................... 82 
                    + + +++ + P+t++nF++lv++gfY++ ++ R  +gf+vq+Gdp+++++++ +     g+ + r+ip E+                         
     KOO22559.1 220 VSMVVDGYTSPITAGNFVDLVDSGFYNNFKIQR-SDGFVVQTGDPQAEGRQKLNGfVPAGAsEVRKIPLEVMvAgdkgpiygatfdddgrggyaaa 314
                    66788999*************************.67***********999777664555554559******855*********************8 PP

  Pro_isomerase  83 klkhkrGalamartgkepnsagsqFfItlke.......aphldgkytvFGkVveGmdvvekiekv 140
                      ++  Gal+mar++ + +sa+sq+f  l +       ++ ldg+y++FG+ v+G +++   +++
     KOO22559.1 315 LPFNAYGALGMAREEVDLDSASSQWFWLLFDsdltpagKNLLDGRYACFGYTVDGARLLSDVKEG 379
                    8888***********99*********99988688887788******************9998886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (409 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       349  (0.0194657); expected 358.6 (0.02)
Passed bias filter:                      302  (0.0168442); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.21s 00:00:00.68 Elapsed: 00:00:00.38
# Mc/sec: 3194.19
//
Query:       KOO22560.1  [L=276]
Description: fatty acid elongase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.9e-47  161.9   9.3    2.3e-47  161.6   9.3    1.0  1  ELO       GNS1/SUR4 family


Domain annotation for each model (and alignments):
>> ELO  GNS1/SUR4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  161.6   9.3   1.3e-51   2.3e-47      24     247 ..      40     260 ..      17     263 .. 0.82

  Alignments for each domain:
  == domain 1  score: 161.6 bits;  conditional E-value: 1.3e-51
         ELO  24 pklmknrkpfklkalvilhnlflavlSavgfvgmvkallevlkk.............kglvdllckddssdegrlrngllaflvllfylsKfvEllDTv 109
                 + l+ +r + + k+ +il+n+++av+S++ f++++   l++ +              ++l++  c      +  ++++l++++ ++fy+sK+vE lDT+
  KOO22560.1  40 SGLVDKR-KGAYKTSMILYNVLMAVFSLACFIATT-VALGWDRGygkplldwagdtpSELYTNSC-----PSPVYNSKLFTYAAWAFYYSKYVEYLDTA 131
                 3444455.34689********************99.34555544566666666667778888888.....66788899999****************** PP

         ELO 110 flvlrkkqvsfLhvYHHatvmllmwaglrfatssgivfivllNsfvHaimYtYYflsalgakklvvpwkrliTslQilQfvvgllaavyllvsytlkkv 208
                  lvl++k+vsfL+++HH+++ + +++g++fa   g++++v+lN f+H++mYtYY+++a+g+     p k+liT +Qi+Qf++g+++++  + +      
  KOO22560.1 132 WLVLKGKEVSFLQTFHHFGAPWDVYLGIKFA-NEGLWIFVFLNAFIHTVMYTYYAITAAGVP---YPAKPLITLMQICQFLAGFTVVYP-YKN-----I 220
                 *******************************.99999999*****************77765...69**************99876655.333.....5 PP

         ELO 209 gC.dtsqtpkaairlnllyllslllLFlnffiksylkkkk 247
                 +C + +q ++ ++++n+ y+  +l+LF++ff+      kk
  KOO22560.1 221 PCfRANQGMMISWIFNYAYVGGVLALFMHFFYMDNFGGKK 260
                 89777799999********************977655555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (276 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       459  (0.025601); expected 358.6 (0.02)
Passed bias filter:                      206  (0.0114898); expected 358.6 (0.02)
Passed Vit filter:                        11  (0.000613531); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.25s 00:00:00.68 Elapsed: 00:00:00.41
# Mc/sec: 2013.91
//
Query:       KOO22561.1  [L=453]
Description: ankyrin 23 unc44 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      1e-49  167.0  25.7      1e-12   48.4   1.0    6.3  7  Ank_2     Ankyrin repeats (3 copies)
    8.4e-46  153.8   2.9    1.2e-08   35.3   0.0    8.2  8  Ank_4     Ankyrin repeats (many copies)
    1.5e-38  126.4  10.2    0.00079   19.7   0.0   11.4 11  Ank_3     Ankyrin repeat
      6e-35  118.2  17.5    4.5e-05   23.7   0.0   10.2 10  Ank       Ankyrin repeat
    2.6e-29  100.9  12.3    1.1e-08   35.1   0.0    7.7  9  Ank_5     Ankyrin repeats (many copies)
  ------ inclusion threshold ------
        0.1   11.8   0.0       0.14   11.4   0.0    1.2  1  Med13_C   Mediator complex subunit 13 C-terminal domain


Domain annotation for each model (and alignments):
>> Ank_2  Ankyrin repeats (3 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.3   0.0   6.6e-15     2e-11      15      82 ..       3      80 ..       1      81 [. 0.85
   2 !   16.4   0.0   3.4e-06      0.01      31      62 ..     108     145 ..     105     152 .. 0.72
   3 !   19.3   0.3   4.2e-07    0.0013      21      62 ..     213     284 ..     165     293 .. 0.77
   4 !   23.2   0.1   2.7e-08     8e-05      24      79 ..     273     348 ..     257     351 .. 0.71
   5 !   33.7   0.4   1.4e-11   4.2e-08       8      79 ..     300     384 ..     293     387 .. 0.81
   6 !   48.4   1.0   3.4e-16     1e-12       1      81 [.     326     419 ..     326     421 .. 0.88
   7 !   41.2   0.1   6.5e-14   1.9e-10       1      73 [.     362     445 ..     362     453 .] 0.83

  Alignments for each domain:
  == domain 1  score: 44.3 bits;  conditional E-value: 6.6e-15
       Ank_2 15 lLl.egadpn..k.ngktaLhyAakngnleivklLleh......adndgrtpLhyAarsghleivklLlekgadinlk 82
                 Ll eg dp+  +  g+t Lh+Aa+ gn+e+++ L+ +      +++ g tpLh+A++s+   ++klL+e+gad+ +k
  KOO22561.1  3 ALLeEGMDPSatNkIGQTGLHVAAIWGNIEVAEVLIRYsadvnaQNQFGITPLHMASQSSKHAVAKLLIECGADPSIK 80
                6788898988753699********************98867554447799*********777************9987 PP

  == domain 2  score: 16.4 bits;  conditional E-value: 3.4e-06
       Ank_2  31 hyAakngnleivklLleh......adndgrtpLhyAar 62 
                 h+A++++++e+++ Ll++      +d +g+tpLh+A++
  KOO22561.1 108 HAAVIADDVELLRELLANgielseQDAEGETPLHLAVK 145
                 77788887888888887666665666778888888875 PP

  == domain 3  score: 19.3 bits;  conditional E-value: 4.2e-07
       Ank_2  21 dpnk.ngktaLhyAakngnleivklLleh.............................adndgrtpLhyAar 62 
                  +++ +g+ ++h+Aa++g+l +++ Ll h                             +dn+ +t+Lh+A+ 
  KOO22561.1 213 SLHNaQGLMPIHIAAEAGSLAVCEKLLTHgapvnaislrtdgqhsgqwgkkvdgkiekLDNTDQTALHLAVI 284
                 2222589****************999987777777777777777888887766665555599********85 PP

  == domain 4  score: 23.2 bits;  conditional E-value: 2.7e-08
       Ank_2  24 kngktaLhyAakn....gnle............ivklLleh......adndgrtpLhyAarsghleivklLlekgadi 79 
                 ++++taLh+A+++       e            +v+lLleh       + +  tpLh+A   g  e+v+lL+  +ad+
  KOO22561.1 273 NTDQTALHLAVIRmveqA--EeagedappgdpsLVRLLLEHkaspnlPNIECATPLHLALMGGLNEVVELLVLAKADL 348
                 2679********855440..14555555555558******9877554335456*******98988******9556776 PP

  == domain 5  score: 33.7 bits;  conditional E-value: 1.4e-11
       Ank_2   8 gnlelvklLl.egadpn..k.ngktaLhyAakngnleivklLleh.......ad..ndgrtpLhyAarsghleivklLlekgadi 79 
                 g+++lv+lLl ++a pn  + +  t+Lh+A ++g +e+v+lL+ +        +   + +t+Lh A    +  ++klL ++ga +
  KOO22561.1 300 GDPSLVRLLLeHKASPNlpNiECATPLHLALMGGLNEVVELLVLAkadlslgCKafGKDNTALHQATLLRNVHTIKLLTKYGAAV 384
                 56789*****98899998647889**********99*******54445554411554578*******99*********9889866 PP

  == domain 6  score: 48.4 bits;  conditional E-value: 3.4e-16
       Ank_2   1 LhlAakngnlelvklLl.egadpn...k...ngktaLhyAakngnleivklLleh...ad...ndgrtpLhyAarsghleivklLlekgadinl 81 
                 LhlA + g +e+v+lL+ ++ad++   k   +++taLh A+   n++++klL ++   +d   +dg+tpL +A+rs+  +++k Lle +ad+++
  KOO22561.1 326 LHLALMGGLNEVVELLVlAKADLSlgcKafgKDNTALHQATLLRNVHTIKLLTKYgaaVDavgRDGWTPLGLAVRSNAVDAAKALLEAKADVHK 419
                 89****99779*****989999877753677889**********9*********8888556679**********************99999975 PP

  == domain 7  score: 41.2 bits;  conditional E-value: 6.5e-14
       Ank_2   1 LhlAakngnlelvklLl.egadpn.k..ngktaLhyAakngnleivklLleh.......adndgrtpLhyAarsghleivklLl 73 
                 Lh+A +  n +++klL  +ga ++    +g+t+L +A++++ ++++k+Lle+       a  +g+tpL +A+ ++ +ei klL 
  KOO22561.1 362 LHQATLLRNVHTIKLLTkYGAAVDaVgrDGWTPLGLAVRSNAVDAAKALLEAkadvhkaASGNGKTPLEIASINKKPEITKLLE 445
                 89****87799*****999999996257*************99*******9554444544477***********999****883 PP

>> Ank_4  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.8   0.0   3.3e-08   9.8e-05      19      55 .]       3      38 ..       1      38 [. 0.96
   2 !   35.3   0.0     4e-12   1.2e-08       5      55 .]      22      71 ..      22      71 .. 0.98
   3 !   30.8   0.0   1.1e-10   3.2e-07       6      44 ..     108     145 ..     105     147 .. 0.96
   4 !    7.5   0.0    0.0021       6.4      32      55 .]     216     239 ..     207     239 .. 0.88
   5 !   10.2   0.1    0.0003      0.91       4      43 ..     222     283 ..     219     286 .. 0.65
   6 !   26.8   0.0   1.9e-09   5.7e-06      11      53 ..     299     340 ..     277     344 .. 0.75
   7 !   25.4   0.1   5.1e-09   1.5e-05       2      55 .]     359     411 ..     358     411 .. 0.97
   8 !   19.6   0.0   3.4e-07     0.001       8      54 ..     398     444 ..     397     445 .. 0.94

  Alignments for each domain:
  == domain 1  score: 22.8 bits;  conditional E-value: 3.3e-08
       Ank_4 19 lLlekgadinaqdnrsGetalhiAakrgnveilklLl 55
                 Lle g+d+ a+ n+ G+t lh Aa +gn+e+++ L+
  KOO22561.1  3 ALLEEGMDPSAT-NKIGQTGLHVAAIWGNIEVAEVLI 38
                699*********.**********************98 PP

  == domain 2  score: 35.3 bits;  conditional E-value: 4e-12
       Ank_4  5 LhyaaisgrlelvrlLlekgadinaqdnrsGetalhiAakrgnveilklLl 55
                Lh aai g++e+++ L+ + ad+naq n  G t+lh+A + ++  ++klL+
  KOO22561.1 22 LHVAAIWGNIEVAEVLIRYSADVNAQ-NQFGITPLHMASQSSKHAVAKLLI 71
                8****************9********.**********************98 PP

  == domain 3  score: 30.8 bits;  conditional E-value: 1.1e-10
       Ank_4   6 hyaaisgrlelvrlLlekgadinaqdnrsGetalhiAak 44 
                 h+a+i+ ++el+r Ll++g+++ +q +++Get+lh A+k
  KOO22561.1 108 HAAVIADDVELLRELLANGIELSEQ-DAEGETPLHLAVK 145
                 99***********************.***********97 PP

  == domain 4  score: 7.5 bits;  conditional E-value: 0.0021
       Ank_4  32 nrsGetalhiAakrgnveilklLl 55 
                 n++G+ ++hiAa  g++ + + Ll
  KOO22561.1 216 NAQGLMPIHIAAEAGSLAVCEKLL 239
                 789*************99998876 PP

  == domain 5  score: 10.2 bits;  conditional E-value: 0.0003
       Ank_4   4 aLhyaaisgrlelvrlLlekgad.......................inaqdnrsGetalhiAa 43 
                 ++h aa++g l +++ Ll +ga                        i +  ++ ++talh A+
  KOO22561.1 222 PIHIAAEAGSLAVCEKLLTHGAPvnaislrtdgqhsgqwgkkvdgkIEKL-DNTDQTALHLAV 283
                 79****************99*99444444444444444444444444333.333777777776 PP

  == domain 6  score: 26.8 bits;  conditional E-value: 1.9e-09
       Ank_4  11 sgrlelvrlLlekgadinaqdnrsGetalhiAakrgnveilkl 53 
                  g+  lvrlLle++a++n   n+++ t+lh A+++g  e+++l
  KOO22561.1 299 PGDPSLVRLLLEHKASPNLP-NIECATPLHLALMGGLNEVVEL 340
                 677889*************8.**************95555555 PP

  == domain 7  score: 25.4 bits;  conditional E-value: 5.1e-09
       Ank_4   2 ltaLhyaaisgrlelvrlLlekgadinaqdnrsGetalhiAakrgnveilklLl 55 
                 +taLh+a    ++ +++lL  +ga ++a+  r+G+t+l  A++ + v+++k Ll
  KOO22561.1 359 NTALHQATLLRNVHTIKLLTKYGAAVDAV-GRDGWTPLGLAVRSNAVDAAKALL 411
                 699**************************.**********************97 PP

  == domain 8  score: 19.6 bits;  conditional E-value: 3.4e-07
       Ank_4   8 aaisgrlelvrlLlekgadinaqdnrsGetalhiAakrgnveilklL 54 
                 a+ s+ +++++ Lle +ad+++ ++++G t+l iA  + ++ei+klL
  KOO22561.1 398 AVRSNAVDAAKALLEAKADVHKAASGNGKTPLEIASINKKPEITKLL 444
                 5668999**************************************98 PP

>> Ank_3  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.6   0.0   2.8e-07   0.00084       2      31 .]      18      46 ..      18      46 .. 0.97
   2 !   19.7   0.0   2.6e-07   0.00079       2      30 ..      51      78 ..      50      79 .. 0.94
   3 ?    5.1   0.1     0.014        43       7      29 ..     108     129 ..     105     131 .. 0.89
   4 !    7.9   0.0    0.0018       5.5       1      13 [.     135     147 ..     135     152 .. 0.86
   5 !   16.6   0.0   2.6e-06    0.0078       2      31 .]     219     247 ..     218     247 .. 0.93
   6 ?    1.8   0.0      0.17   5.2e+02       3      11 ..     276     284 ..     274     285 .. 0.86
   7 ?    3.6   0.0     0.045   1.3e+02      13      30 ..     300     316 ..     299     317 .. 0.86
   8 !   11.1   0.1   0.00016      0.49       4      29 ..     324     348 ..     323     350 .. 0.91
   9 !    8.5   0.0    0.0012       3.5       3      30 ..     359     385 ..     357     386 .. 0.91
  10 !   19.1   0.0     4e-07    0.0012       1      30 [.     390     418 ..     390     419 .. 0.95
  11 !    6.8   0.0    0.0042        13       1      23 [.     424     445 ..     424     453 .] 0.76

  Alignments for each domain:
  == domain 1  score: 19.6 bits;  conditional E-value: 2.8e-07
       Ank_3  2 GetpLhlAarsgnleivkfLlenkgadvna 31
                G+t Lh+Aa  gn+e+++ L++ + advna
  KOO22561.1 18 GQTGLHVAAIWGNIEVAEVLIR-YSADVNA 46
                8999******************.*****96 PP

  == domain 2  score: 19.7 bits;  conditional E-value: 2.6e-07
       Ank_3  2 GetpLhlAarsgnleivkfLlenkgadvn 30
                G tpLh+A  s +++++k+L+e +gad+ 
  KOO22561.1 51 GITPLHMASQSSKHAVAKLLIE-CGADPS 78
                99********************.****97 PP

  == domain 3  score: 5.1 bits;  conditional E-value: 0.014
       Ank_3   7 hlAarsgnleivkfLlenkgadv 29 
                 h A+ ++++e+++ Ll  +g+++
  KOO22561.1 108 HAAVIADDVELLRELLA-NGIEL 129
                 99***************.89986 PP

  == domain 4  score: 7.9 bits;  conditional E-value: 0.0018
       Ank_3   1 nGetpLhlAarsg 13 
                 +GetpLhlA++++
  KOO22561.1 135 EGETPLHLAVKAA 147
                 69*******9876 PP

  == domain 5  score: 16.6 bits;  conditional E-value: 2.6e-06
       Ank_3   2 GetpLhlAarsgnleivkfLlenkgadvna 31 
                 G  p+h+Aa++g+l++++ Ll  +ga+vna
  KOO22561.1 219 GLMPIHIAAEAGSLAVCEKLLT-HGAPVNA 247
                 6679******************.9****96 PP

  == domain 6  score: 1.8 bits;  conditional E-value: 0.17
       Ank_3   3 etpLhlAar 11 
                 +t+LhlA+ 
  KOO22561.1 276 QTALHLAVI 284
                 8******85 PP

  == domain 7  score: 3.6 bits;  conditional E-value: 0.045
       Ank_3  13 gnleivkfLlenkgadvn 30 
                 g++++v++Lle + a +n
  KOO22561.1 300 GDPSLVRLLLE-HKASPN 316
                 67889******.899998 PP

  == domain 8  score: 11.1 bits;  conditional E-value: 0.00016
       Ank_3   4 tpLhlAarsgnleivkfLlenkgadv 29 
                 tpLhlA++ g  e+v++L+    ad+
  KOO22561.1 324 TPLHLALMGGLNEVVELLVL-AKADL 348
                 9*****************99.78886 PP

  == domain 9  score: 8.5 bits;  conditional E-value: 0.0012
       Ank_3   3 etpLhlAarsgnleivkfLlenkgadvn 30 
                 +t+Lh+A +  n+  +k+L + +ga v+
  KOO22561.1 359 NTALHQATLLRNVHTIKLLTK-YGAAVD 385
                 8************88999999.9*9997 PP

  == domain 10  score: 19.1 bits;  conditional E-value: 4e-07
       Ank_3   1 nGetpLhlAarsgnleivkfLlenkgadvn 30 
                 +G+tpL lA+rs+ ++ +k+Lle   adv+
  KOO22561.1 390 DGWTPLGLAVRSNAVDAAKALLE-AKADVH 418
                 69*********************.899997 PP

  == domain 11  score: 6.8 bits;  conditional E-value: 0.0042
       Ank_3   1 nGetpLhlAarsgnleivkfLle 23 
                 nG tpL +A  + ++e +  Lle
  KOO22561.1 424 NGKTPLEIASINKKPE-ITKLLE 445
                 79**************.555555 PP

>> Ank  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.3   0.0   7.5e-07    0.0022       2      31 ..      18      48 ..      17      49 .. 0.92
   2 !   23.7   0.0   1.5e-08   4.5e-05       2      29 ..      51      79 ..      50      81 .. 0.91
   3 ?   -0.7   0.1      0.81   2.4e+03       7      31 ..     108     133 ..     108     134 .. 0.75
   4 !   10.0   0.0   0.00032      0.97       2      11 ..     136     151 ..     135     183 .. 0.65
   5 !   13.6   0.2   2.4e-05     0.073       5      29 ..     222     247 ..     218     250 .. 0.91
   6 !   14.9   0.0   9.4e-06     0.028       3      31 ..     276     319 ..     275     320 .. 0.76
   7 !   14.9   0.2   8.9e-06     0.027       4      27 ..     324     348 ..     323     351 .. 0.89
   8 !    6.4   0.1    0.0044        13       3      30 ..     359     387 ..     357     389 .. 0.83
   9 !    9.0   0.0   0.00068         2       1      28 [.     390     418 ..     390     420 .. 0.85
  10 !    9.4   0.0   0.00051       1.5       1      21 [.     424     444 ..     424     452 .. 0.89

  Alignments for each domain:
  == domain 1  score: 18.3 bits;  conditional E-value: 7.5e-07
                SBBHHHHHHHHTTHHHHHHHH.TTTSTTCBT CS
         Ank  2 GnTPLHlAatngkkriiklLL.hGAnlnald 31
                G T LH+Aa  g+ ++++ L+ ++A++na++
  KOO22561.1 18 GQTGLHVAAIWGNIEVAEVLIrYSADVNAQN 48
                8899****999**********889*****98 PP

  == domain 2  score: 23.7 bits;  conditional E-value: 1.5e-08
                SBBHHHHHHHHTTHHHHHHHH.TTTSTTC CS
         Ank  2 GnTPLHlAatngkkriiklLL.hGAnlna 29
                G TPLH+A++  k+ ++klL+ +GA++ +
  KOO22561.1 51 GITPLHMASQSSKHAVAKLLIeCGADPSI 79
                99*******888899******99***986 PP

  == domain 3  score: -0.7 bits;  conditional E-value: 0.81
                 HHHHHHTTHHHHHHHH.TTTSTTCBT CS
         Ank   7 HlAatngkkriiklLL.hGAnlnald 31 
                 H A+  ++++ +++LL +G +l  +d
  KOO22561.1 108 HAAVIADDVELLRELLaNGIELSEQD 133
                 66776677899999**8897776665 PP

  == domain 4  score: 10.0 bits;  conditional E-value: 0.00032
                 SBBHHHHHH......H CS
         Ank   2 GnTPLHlAa......t 11 
                 G TPLHlA+      +
  KOO22561.1 136 GETPLHLAVkaalgeS 151
                 99*****974443332 PP

  == domain 5  score: 13.6 bits;  conditional E-value: 2.4e-05
                 HHHHHHHHTTHHHHHHHH.TTTSTTC CS
         Ank   5 PLHlAatngkkriiklLL.hGAnlna 29 
                 P H+Aa  g++ +++ LL hGA +na
  KOO22561.1 222 PIHIAAEAGSLAVCEKLLtHGAPVNA 247
                 99****99*9********9***9998 PP

  == domain 6  score: 14.9 bits;  conditional E-value: 9.4e-06
                 BBHHHHHH.........HHTT.......HHHHHHHH.TTTSTTCBT CS
         Ank   3 nTPLHlAa.........tngk.......kriiklLL.hGAnlnald 31 
                  T+LHlA+            +       ++ ++lLL h A++n+ +
  KOO22561.1 276 QTALHLAVirmveqaeeA--GedappgdPSLVRLLLeHKASPNLPN 319
                 5******88866666541..2456666799******999****877 PP

  == domain 7  score: 14.9 bits;  conditional E-value: 8.9e-06
                 BHHHHHHHHTTHHHHHHHH.TTTST CS
         Ank   4 TPLHlAatngkkriiklLL.hGAnl 27 
                 TPLHlA ++g  ++++lL+   A+l
  KOO22561.1 324 TPLHLALMGGLNEVVELLVlAKADL 348
                 9******9999*******9778888 PP

  == domain 8  score: 6.4 bits;  conditional E-value: 0.0044
                 BBHHHHHHHHTTHHHHHHHH.TTTSTTCB CS
         Ank   3 nTPLHlAatngkkriiklLL.hGAnlnal 30 
                 nT+LH A    +++ iklL  +GA ++a+
  KOO22561.1 359 NTALHQATLLRNVHTIKLLTkYGAAVDAV 387
                 8*****99889999***776779878886 PP

  == domain 9  score: 9.0 bits;  conditional E-value: 0.00068
                 TSBBHHHHHHHHTTHHHHHHHH.TTTSTT CS
         Ank   1 dGnTPLHlAatngkkriiklLL.hGAnln 28 
                 dG+TPL lA++ + ++ +k+LL   A+++
  KOO22561.1 390 DGWTPLGLAVRSNAVDAAKALLeAKADVH 418
                 9*********87779999****6568875 PP

  == domain 10  score: 9.4 bits;  conditional E-value: 0.00051
                 TSBBHHHHHHHHTTHHHHHHH CS
         Ank   1 dGnTPLHlAatngkkriiklL 21 
                 +G TPL +A+ n+k++i+klL
  KOO22561.1 424 NGKTPLEIASINKKPEITKLL 444
                 7*********9999*****76 PP

>> Ank_5  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.1   0.0   3.8e-12   1.1e-08       1      56 []       4      58 ..       4      58 .. 0.99
   2 !   15.2   0.0   6.7e-06      0.02       4      49 ..      40      84 ..      37      88 .. 0.82
   3 !   17.0   0.1   1.8e-06    0.0054      21      56 .]     108     143 ..     106     143 .. 0.97
   4 !   16.3   0.1     3e-06    0.0089      16      44 ..     219     247 ..     211     251 .. 0.89
   5 ?    1.7   0.0      0.11   3.4e+02      13      24 ..     272     283 ..     268     285 .. 0.76
   6 !   13.0   0.0   3.2e-05     0.095      28      56 .]     301     329 ..     300     329 .. 0.94
   7 !   16.0   0.4   3.7e-06     0.011       1      53 [.     308     362 ..     307     365 .. 0.85
   8 !    7.1   0.0    0.0024       7.2      17      56 .]     359     398 ..     354     398 .. 0.81
   9 !   14.6   0.1     1e-05      0.03       5      56 .]     381     432 ..     376     432 .. 0.82

  Alignments for each domain:
  == domain 1  score: 35.1 bits;  conditional E-value: 3.8e-12
       Ank_5  1 LlehgpadvnrldgggntpLhvAakygaadvvrlLlargadlnltdsrGltaldlA 56
                Lle+g +d+ ++++ g+t LhvAa  g+ +v+++L+ + ad n+++  G t+l++A
  KOO22561.1  4 LLEEG-MDPSATNKIGQTGLHVAAIWGNIEVAEVLIRYSADVNAQNQFGITPLHMA 58
                899**.************************************************98 PP

  == domain 2  score: 15.2 bits;  conditional E-value: 6.7e-06
       Ank_5  4 hgpadvnrldgggntpLhvAakygaadvvrlLlargadlnltdsrG 49
                + +advn+++++g tpLh+A+      v++lL++ gad+ ++ ++G
  KOO22561.1 40 Y-SADVNAQNQFGITPLHMASQSSKHAVAKLLIECGADPSIKAGNG 84
                3.69*****************9888888888888888887776665 PP

  == domain 3  score: 17.0 bits;  conditional E-value: 1.8e-06
       Ank_5  21 hvAakygaadvvrlLlargadlnltdsrGltaldlA 56 
                 h A+ +   +++r+Lla+g  l  +d++G+t+l+lA
  KOO22561.1 108 HAAVIADDVELLRELLANGIELSEQDAEGETPLHLA 143
                 88999*****************************98 PP

  == domain 4  score: 16.3 bits;  conditional E-value: 3e-06
       Ank_5  16 gntpLhvAakygaadvvrlLlargadlnl 44 
                 g  p+h+Aa++g++ v+++Ll +ga  n+
  KOO22561.1 219 GLMPIHIAAEAGSLAVCEKLLTHGAPVNA 247
                 679*********************99886 PP

  == domain 5  score: 1.7 bits;  conditional E-value: 0.11
       Ank_5  13 dgggntpLhvAa 24 
                 d+  +t+Lh+A+
  KOO22561.1 272 DNTDQTALHLAV 283
                 56667*****98 PP

  == domain 6  score: 13.0 bits;  conditional E-value: 3.2e-05
       Ank_5  28 aadvvrlLlargadlnltdsrGltaldlA 56 
                  +++vrlLl++ a++nl + ++ t+l+lA
  KOO22561.1 301 DPSLVRLLLEHKASPNLPNIECATPLHLA 329
                 6789***********************98 PP

  == domain 7  score: 16.0 bits;  conditional E-value: 3.7e-06
       Ank_5   1 LlehgpadvnrldgggntpLhvAakygaadvvrlLl..argadlnltdsrG.ltal 53 
                 Lleh  a++n ++ +  tpLh+A  +g  +vv+lL+  +  ++l+++ +   +tal
  KOO22561.1 308 LLEHK-ASPNLPNIECATPLHLALMGGLNEVVELLVlaKADLSLGCKAFGKdNTAL 362
                 89999.99*****999********************88777777776666556665 PP

  == domain 8  score: 7.1 bits;  conditional E-value: 0.0024
       Ank_5  17 ntpLhvAakygaadvvrlLlargadlnltdsrGltaldlA 56 
                 nt+Lh+A   ++   ++lL ++ga+ ++   +G+t+l lA
  KOO22561.1 359 NTALHQATLLRNVHTIKLLTKYGAAVDAVGRDGWTPLGLA 398
                 67777777777777777777****************9665 PP

  == domain 9  score: 14.6 bits;  conditional E-value: 1e-05
       Ank_5   5 gpadvnrldgggntpLhvAakygaadvvrlLlargadlnltdsrG.ltaldlA 56 
                 g a+v++  ++g tpL +A++ +a d ++ Ll+  ad     s + +t+l++A
  KOO22561.1 381 G-AAVDAVGRDGWTPLGLAVRSNAVDAAKALLEAKADVHKAASGNgKTPLEIA 432
                 4.66666666677*******************99999977777777*****99 PP

>> Med13_C  Mediator complex subunit 13 C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   4.7e-05      0.14     279     329 ..     168     227 ..      50     227 .. 0.77

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 4.7e-05
     Med13_C 279 v........kssksshpldskatedvL.revleqYraLswLarargtgdrrsclPvHlaa 329
                 +        + sk++  ++s+at+d++   vl   +a s L+ a + ++ +  +P+H+aa
  KOO22561.1 168 SaclemilgEASKNKSAISSTATDDAMsFAVLAAKQAISSLTSAQSLHNAQGLMPIHIAA 227
                 033333333666777899*********778****************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (453 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       348  (0.0194099); expected 358.6 (0.02)
Passed bias filter:                      259  (0.0144459); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.51u 0.24s 00:00:00.75 Elapsed: 00:00:00.40
# Mc/sec: 3413.68
//
Query:       KOO22562.1  [L=140]
Description: hypothetical protein Ctob_000055 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
  ------ inclusion threshold ------
      0.074   13.4   1.3       0.98    9.8   0.1    2.1  2  BLOC1_2       Biogenesis of lysosome-related organelles compl
      0.084   13.1   0.1       0.12   12.7   0.1    1.3  1  DUF948        Bacterial protein of unknown function (DUF948)
       0.23   12.0   3.9        1.1    9.9   3.9    1.9  1  Syntaxin-6_N  Syntaxin 6, N-terminal


Domain annotation for each model (and alignments):
>> BLOC1_2  Biogenesis of lysosome-related organelles complex-1 subunit 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   0.1   0.00016      0.98      28      71 ..       1      44 [.       1      54 [. 0.93
   2 ?    2.8   0.1     0.025   1.5e+02      43      70 ..      65      92 ..      59     101 .. 0.69

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.00016
     BLOC1_2 28 lNeaasekykklkdvaaslekkleklnekyeelqpylqqidqie 71
                +N  ++++yk+  d+ ++l++k  + ++ +e ++p   ++ q++
  KOO22562.1  1 MNDLSTRRYKETLDKEKQLRRKWAAHEQSQEIFDPSSAEMAQLQ 44
                9**********************************999888876 PP

  == domain 2  score: 2.8 bits;  conditional E-value: 0.025
     BLOC1_2 43 aaslekkleklnekyeelqpylqqidqi 70
                ++++ ++ ++l ++ +e++  l +id+ 
  KOO22562.1 65 VSEAPSSRKQLTKLRNEIRTTLANIDKK 92
                5666667777777788888888888764 PP

>> DUF948  Bacterial protein of unknown function (DUF948)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.1     2e-05      0.12      39      78 ..      72     111 ..      27     116 .. 0.84

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 2e-05
      DUF948  39 ekqvdpilkevedllakvnelledvneklekvdplteava 78 
                 +kq++++ +e++++la++ + le v  +++  dp++ea++
  KOO22562.1  72 RKQLTKLRNEIRTTLANIDKKLETVDAESNVGDPVVEAAK 111
                 48999999****************************9997 PP

>> Syntaxin-6_N  Syntaxin 6, N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   3.9   0.00018       1.1      34      62 ..      39      98 ..       5     119 .. 0.68

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.00018
  Syntaxin-6_N 34 s...............................tseeldetrteLrkalrsiewdledLee 62
                  +                               ++++l ++r+e+r++l +i+++le  + 
    KOO22562.1 39 EmaqlqglnlklmdlcadptrtgksevseapsSRKQLTKLRNEIRTTLANIDKKLETVDA 98
                  0555555555555555555555666666666689*********************98875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (140 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       928  (0.0517597); expected 358.6 (0.02)
Passed bias filter:                      510  (0.0284455); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.41u 0.22s 00:00:00.63 Elapsed: 00:00:00.38
# Mc/sec: 1115.81
//
Query:       KOO22563.1  [L=238]
Description: hypothetical protein Ctob_000054 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
  ------ inclusion threshold ------
      0.069   12.0   2.9       0.09   11.6   2.9    1.2  1  VPS38        Vacuolar protein sorting 38
      0.083   12.2  20.6      0.011   15.1   7.0    2.0  2  DUF4407      Domain of unknown function (DUF4407)
       0.11   12.8   7.4       0.28   11.5   2.9    2.7  2  Csm1_N       Csm1 N-terminal domain
       0.28   10.2   6.8      0.015   14.4   1.6    1.4  2  GHL13        Hypothetical glycosyl hydrolase family 13
       0.29   10.9  25.8      0.031   14.1   8.7    2.2  2  ERM          Ezrin/radixin/moesin family
        3.2    7.8  16.1        8.2    6.5   8.7    2.4  2  ADIP         Afadin- and alpha -actinin-Binding


Domain annotation for each model (and alignments):
>> VPS38  Vacuolar protein sorting 38
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   2.9     3e-05      0.09     192     256 ..     173     236 ..     166     238 .] 0.88

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 3e-05
                 HHHHHHHHHHHHHHHHS--S-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH- CS
       VPS38 192 eeElqeisekveelikseekkelwslkelqkaieqlkksiekkklklkrLessleeenskteess 256
                 e E+++ ++ +e  ++ e+++ + ++++l+  +e+l++ ++ k+ k+++L+++l+e +s+te s+
  KOO22563.1 173 ESECRRAVTSAEGRLQLEQQRYMQQIERLEFENEELRRATRAKSDKINALKQQLTE-RSNTERSN 236
                 6799999***********************************************97.55555544 PP

>> DUF4407  Domain of unknown function (DUF4407)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.1   7.0   3.7e-06     0.011     136     248 ..       7     148 ..       2     165 .. 0.69
   2 ?    3.3   5.6     0.015        44     128     169 ..     190     232 ..     171     238 .] 0.73

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 3.7e-06
     DUF4407 136 aeleaqiaalqaeidaaearldalraeaqkeldgtk...........gtgttgvaGkgpaakekkaqldaaqaelaelkakld................ 207
                 a+l++++a+++a+++++ea+l+++r +a++ + ++k                + a   + a+e++++  +a++++ e+ka +                 
  KOO22563.1   7 ARLQSEVASWEAKVSSLEAALTEARSAAADSAAQAKacaeaadvrvaA----AEAEGRKFAEEAREWRRQAERAIVEAKAARAcppspspsasstplpp 101
                 566777777777777777777777777777777666666555554321....22222467888******************99**************** PP

     DUF4407 208 ......atarlaalraelaeleaerakeraasqaaaaaddGllarle 248
                       +++r aa++  +ae++a++a++ ++ ++ +a+ + +++rl+
  KOO22563.1 102 spsvvsSEKRAAAAEVAAAEAAAAAAEAMKRADTWQAEGACVAERLH 148
                 ****9855555555555555555555555555555555555566655 PP

  == domain 2  score: 3.3 bits;  conditional E-value: 0.015
     DUF4407 128 aaa.ltaelaeleaqiaalqaeidaaearldalraeaqkeldg 169
                 +++ + +++++le ++++l+++ +a++++++al++++++  + 
  KOO22563.1 190 EQQrYMQQIERLEFENEELRRATRAKSDKINALKQQLTERSNT 232
                 2225999999999999999999999999999999999955443 PP

>> Csm1_N  Csm1 N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.9   0.1     0.047   1.4e+02      32      65 ..       9      42 ..       6      47 .. 0.62
   2 ?   11.5   2.9   9.4e-05      0.28      22      56 ..     198     232 ..     180     238 .] 0.88

  Alignments for each domain:
  == domain 1  score: 2.9 bits;  conditional E-value: 0.047
      Csm1_N 32 LsqkletkdqeiesLkeqlaeleekvkeleerrk 65
                L+ ++ + + +++sL++ l e+++  +++  ++k
  KOO22563.1  9 LQSEVASWEAKVSSLEAALTEARSAAADSAAQAK 42
                4555666666777777777777766666666655 PP

  == domain 2  score: 11.5 bits;  conditional E-value: 9.4e-05
      Csm1_N  22 vsklvhENsvLsqkletkdqeiesLkeqlaeleek 56 
                 +++l  EN  L+++++ k+++i++Lk+ql e  + 
  KOO22563.1 198 IERLEFENEELRRATRAKSDKINALKQQLTERSNT 232
                 778889***********************986554 PP

>> GHL13  Hypothetical glycosyl hydrolase family 13
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.3         1     3e+03     163     198 ..      41      76 ..      21      82 .. 0.53
   2 ?   14.4   1.6   5.1e-06     0.015     101     214 ..     115     234 ..     104     238 .] 0.78

  Alignments for each domain:
  == domain 1  score: -3.0 bits;  conditional E-value: 1
                 HHHHHHHHHTT--S-HHHHHTSHHHHHHHHHHHHHH CS
       GHL13 163 eaalaaykkaglpesiaeiradpellakwtklktka 198
                  +a a  +++ ++++ ae r+  e++++w ++  +a
  KOO22563.1  41 AKACAEAADVRVAAAEAEGRKFAEEAREWRRQAERA 76 
                 333333444444444455555555555555555544 PP

  == domain 2  score: 14.4 bits;  conditional E-value: 5.1e-06
                 -GTCHCCHCT-CC..CGG-B-TTSHHHHHHHHHHHHHHHHH--.-SEEEE-TT----TT---SHHHHH......HHHHTT--S-HHHHHTSHHHHHHHH CS
       GHL13 101 lvsatekaekkrkkakykRLspfspearklikeiYedlaaaak.fdGiLfhddavlsdfEdaseaala......aykkaglpesiaeiradpellakwt 192
                 +++a + + ++ +++ +kR   +++e   + + + e+l+a a  ++G+   d a+    E + ++a++      + +++   ++i++++ ++e+l++ t
  KOO22563.1 115 AEVA-AAEAAAAAAEAMKRADTWQAEGACVAERLHEQLGALALaLEGMQVPDMAFSGVAESECRRAVTsaegrlQLEQQRYMQQIERLEFENEELRRAT 212
                 3333.334444556889*********************998865************9999998888761111113456677788999999********* PP

                 HHHHHHHHHHHHHHHHHHHHHH CS
       GHL13 193 klktkalidfteelakrvrayr 214
                 + k+ ++  + ++l++r +++r
  KOO22563.1 213 RAKSDKINALKQQLTERSNTER 234
                 ***************9988776 PP

>> ERM  Ezrin/radixin/moesin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   8.7     1e-05     0.031      44     205 ..       8     165 ..       3     169 .. 0.66
   2 ?    2.8   9.1      0.03        90      72     122 ..     186     236 ..     170     238 .] 0.74

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 1e-05
         ERM  44 raeeeaelLeqkaaeaeeeiqrlkesaekeeeekeklerklreaeleaarleeeserkeeeaerLkeeleeareaeeeak....ekllealstpskses 138
                 r++ e    e+k + +e++ ++ + +a+++++   + ++ +++a+ ++a  e e ++ +eea+++++++e+a  + + a+    +    a+stp ++++
  KOO22563.1   8 RLQSEVASWEAKVSSLEAALTEARSAAADSAA---QAKACAEAADVRVAAAEAEGRKFAEEAREWRRQAERAIVEAKAARacppSPSPSASSTPLPPSP 103
                 56667777777777777777777777766665...5666678899999999********************9999987772222223333333322222 PP

         ERM 139 eenveeseteeeeenseeesaeletdeveklsleieeeRvtylekskrlqeqLkeLkseleqlkdee 205
                  + v++++++ +    e ++ae  +   +++ ++  +   + +   +rl+eqL +L   le +++ +
  KOO22563.1 104 -SVVSSEKRAAAA---EVAAAEAAAA-AAEAMKRADTWQAEGACVAERLHEQLGALALALEGMQVPD 165
                 .222222222222...2233333333.334457777778888999999********99999988765 PP

  == domain 2  score: 2.8 bits;  conditional E-value: 0.03
         ERM  72 keeeekeklerklreaeleaarleeeserkeeeaerLkeeleeareaeeea 122
                 + + e+++ ++++++ e+e ++l+++ ++k  + + Lk++l e  ++e+ +
  KOO22563.1 186 RLQLEQQRYMQQIERLEFENEELRRATRAKSDKINALKQQLTERSNTERSN 236
                 456688888889999999999999999999999999999998888888766 PP

>> ADIP  Afadin- and alpha -actinin-Binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.6   0.7    0.0052        15      85     117 ..       8      40 ..       4      77 .. 0.60
   2 ?    6.5   8.7    0.0028       8.2      52     113 ..     174     235 ..     170     238 .] 0.87

  Alignments for each domain:
  == domain 1  score: 5.6 bits;  conditional E-value: 0.0052
        ADIP  85 qlerelalvqakerqlekklktleqklknekee 117
                 +l++e+a+++ak  +le++l+++ +++   + +
  KOO22563.1   8 RLQSEVASWEAKVSSLEAALTEARSAAADSAAQ 40 
                 567777777777777777776666555444333 PP

  == domain 2  score: 6.5 bits;  conditional E-value: 0.0028
        ADIP  52 leqreslnetirkleaeierlqskierlktqleqlerelalvqakerqlekklktleqklkn 113
                  e r +++    +l+ e +r +++ierl+ ++e+l+r + +   k + l+++l++ +++ ++
  KOO22563.1 174 SECRRAVTSAEGRLQLEQQRYMQQIERLEFENEELRRATRAKSDKINALKQQLTERSNTERS 235
                 5677778888889999*************************************999887765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (238 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1902  (0.106085); expected 358.6 (0.02)
Passed bias filter:                      460  (0.0256568); expected 358.6 (0.02)
Passed Vit filter:                        72  (0.00401584); expected 17.9 (0.001)
Passed Fwd filter:                        24  (0.00133861); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.56u 0.30s 00:00:00.86 Elapsed: 00:00:00.42
# Mc/sec: 1682.35
//
Query:       KOO22564.1  [L=112]
Description: transmembrane emp24 domain-containing protein 10-like protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
      8e-23   81.3   0.8    8.9e-23   81.2   0.8    1.0  1  EMP24_GP25L  emp24/gp25L/p24 family/GOLD
  ------ inclusion threshold ------
      0.072   13.5   0.3       0.11   12.9   0.3    1.3  1  CopD         Copper resistance protein D


Domain annotation for each model (and alignments):
>> EMP24_GP25L  emp24/gp25L/p24 family/GOLD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   81.2   0.8   9.9e-27   8.9e-23      75     182 .]       2     107 ..       1     107 [. 0.93

  Alignments for each domain:
  == domain 1  score: 81.2 bits;  conditional E-value: 9.9e-27
  EMP24_GP25L  75 ykvCfdnsfstksskkvsfdievgseasdykdsakkekletleselkkleekldsikreqkylrereerlrdtnestnsrvvwwsilqllvlvlvavl 172
                  +k+C++ns    +++++++ + ++ +  d +++akke++e +e el+++ +   ++++e++y+r+r +++++tn st  r++w+ ++ +++++l++++
   KOO22564.1   2 HKICVSNSAGEERKVMINIRLALQVD--DHETVAKKEHIEAIEAELDRMRNMAVHVYEEMIYMRRRADQQHATNASTRGRLLWVEVCMMFAVLLMGLW 97 
                  89*****9888877777777777654..7899****************************************************************** PP

  EMP24_GP25L 173 qvyyLkrfFk 182
                  q++yL+++Fk
   KOO22564.1  98 QIRYLRNYFK 107
                  *********7 PP

>> CopD  Copper resistance protein D
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.3   1.2e-05      0.11      33      65 ..      70     102 ..      59     109 .. 0.79

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 1.2e-05
        CopD  33 agllttayGrlllaKlalllvllalaalnrfrl 65 
                 ++  ++++Grll++ ++++ ++l++++++ + l
  KOO22564.1  70 HATNASTRGRLLWVEVCMMFAVLLMGLWQIRYL 102
                 5666799*******************9987666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (112 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1029  (0.0573931); expected 358.6 (0.02)
Passed bias filter:                      543  (0.0302861); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.39u 0.25s 00:00:00.64 Elapsed: 00:00:00.40
# Mc/sec: 834.99
//
Query:       KOO22565.1  [L=88]
Description: 60s ribosomal protein l27a [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.8e-15   57.1   0.0      3e-15   57.0   0.0    1.0  1  Ribosomal_L27A  Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27


Domain annotation for each model (and alignments):
>> Ribosomal_L27A  Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.0   0.0   1.7e-19     3e-15      40     127 ..       4      85 ..       1      86 [. 0.84

  Alignments for each domain:
  == domain 1  score: 57.0 bits;  conditional E-value: 1.7e-19
                     --GGG..---EEEEHHHHHHTTTTGTTS--..----EEEGGGTTTTSSS....SE.EEE--S---.-.-EEEESEE-HHHHHHHHHTT-EEE CS
  Ribosomal_L27A  40 fknskfkkeykvvnlkdLdelideerlela..deaeeidleelaeaglikkkdgv.Kvlgkgeltkk.lkvkaskfSkkAkekIeaaGGkve 127
                     f++ k++ + +v+n+++L++l++ee  +    ++a +id+ +           g+ Kvlg gel+ + l vka+ fSk A++kI+a+GG+++
      KOO22565.1   4 FHKLKQQFHCPVINVEKLWTLVSEEAKTSCpkGKAVVIDCVKN----------GYfKVLGGGELPDQpLVVKAKVFSKDAEKKIKAVGGACV 85 
                     44444445559*************9987445677888888888..........***********9977**********************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (88 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       392  (0.021864); expected 358.6 (0.02)
Passed bias filter:                      317  (0.0176809); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.28s 00:00:00.64 Elapsed: 00:00:00.43
# Mc/sec: 611.48
//
Query:       KOO22566.1  [L=677]
Description: flagellar associated protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.23   11.3  21.3       0.14   12.0   0.4    4.2  4  IQ        IQ calmodulin-binding motif


Domain annotation for each model (and alignments):
>> IQ  IQ calmodulin-binding motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.1      0.74   1.3e+04       7      16 ..     314     323 ..     314     324 .. 0.71
   2 ?    4.2   0.8    0.0025        45       3      21 .]     595     613 ..     593     613 .. 0.84
   3 ?   12.0   0.4   7.7e-06      0.14       4      21 .]     619     636 ..     617     636 .. 0.93
   4 ?    7.3   2.8   0.00027       4.8       1      17 [.     639     655 ..     639     657 .. 0.89

  Alignments for each domain:
  == domain 1  score: -3.5 bits;  conditional E-value: 0.74
                 HHHHHHHHHH CS
          IQ   7 IQaawRGyla 16 
                 +Q+ +R  +a
  KOO22566.1 314 MQCLCRVAVA 323
                 5999996555 PP

  == domain 2  score: 4.2 bits;  conditional E-value: 0.0025
                 HHHHHHHHHHHHHHHHHHH CS
          IQ   3 aaikIQaawRGylaRkryk 21 
                 a  +IQ+  R +la+ r++
  KOO22566.1 595 ASAIIQSGSRVWLAKARLR 613
                 6679**********98765 PP

  == domain 3  score: 12.0 bits;  conditional E-value: 7.7e-06
                 HHHHHHHHHHHHHHHHHH CS
          IQ   4 aikIQaawRGylaRkryk 21 
                 a+ IQa +R+ ++Rkr k
  KOO22566.1 619 ATMIQAIVRANRMRKRMK 636
                 99*************986 PP

  == domain 4  score: 7.3 bits;  conditional E-value: 0.00027
                 HHHHHHHHHHHHHHHHH CS
          IQ   1 rkaaikIQaawRGylaR 17 
                 ++a+ +IQ+++RG ++R
  KOO22566.1 639 HAAVRRIQRQYRGCRTR 655
                 578889*********99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (677 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       839  (0.0467957); expected 358.6 (0.02)
Passed bias filter:                      572  (0.0319036); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.63u 0.32s 00:00:00.95 Elapsed: 00:00:00.46
# Mc/sec: 4397.39
//
Query:       KOO22567.1  [L=153]
Description: peptidyl-tRNA hydrolase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.7e-25   89.9   0.0    1.9e-25   89.8   0.0    1.1  1  Pept_tRNA_hydro  Peptidyl-tRNA hydrolase


Domain annotation for each model (and alignments):
>> Pept_tRNA_hydro  Peptidyl-tRNA hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   89.8   0.0     1e-29   1.9e-25      68     153 ..       8      93 ..       1     115 [. 0.85

  Alignments for each domain:
  == domain 1  score: 89.8 bits;  conditional E-value: 1e-29
                      --..GEEEEEEETTSSTTEEEEEESS--TT-HHHHHHHHHHT-S-SEEEEEEE---ST-CGGHHHHCTSB-HHHHHC.HHHHHHHHH CS
  Pept_tRNA_hydro  68 ieseeilvvhDdldlplgkirlkkkgssgghnGlksiikklgtekfvRlriGIgrpekakkkvadyVLskfskeeek.leevlekaa 153
                      +++ ++++ hDdldl++g++++k++gssggh+G+ s++++l + +f+RlriGIgrp++ k++v d+VL++f+++e++ l +++e++a
       KOO22567.1   8 CSPARVVIAHDDLDLQCGRLKIKQGGSSGGHKGIDSCTACLRSADFHRLRIGIGRPAR-KEDVPDFVLEPFTSAERTtLVALFERLA 93 
                      56779***************************************************97.668**********999665777777644 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (153 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       319  (0.0177924); expected 358.6 (0.02)
Passed bias filter:                      209  (0.0116571); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.24s 00:00:00.63 Elapsed: 00:00:00.41
# Mc/sec: 1123.52
//
Query:       KOO22568.1  [L=483]
Description: myb transcription factor [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.3e-25   87.6   2.4    5.3e-12   45.7   0.2    2.7  2  Myb_DNA-binding  Myb-like DNA-binding domain
    5.5e-15   55.4   0.1    3.3e-06   27.2   0.0    2.5  2  Myb_DNA-bind_6   Myb-like DNA-binding domain
    1.8e-06   27.8   0.0      0.027   14.3   0.0    2.3  2  Myb_DNA-bind_7   Myb DNA-binding like
  ------ inclusion threshold ------
      0.033   14.2   0.0       0.25   11.4   0.0    2.2  2  SLIDE            SLIDE


Domain annotation for each model (and alignments):
>> Myb_DNA-binding  Myb-like DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.3   0.1   2.9e-14   1.3e-10       1      45 [.     307     351 ..     307     352 .. 0.97
   2 !   45.7   0.2   1.2e-15   5.3e-12       1      44 [.     409     452 ..     409     454 .. 0.95

  Alignments for each domain:
  == domain 1  score: 41.3 bits;  conditional E-value: 2.9e-14
                      CSSSBHHHHHHHHHHHHHHTTCHHHHHHHHTSS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgkWteeEdelLleavkkhGnrWkkIaerlggRtekqcrsrwrny 45 
                      r++Wt+ +d l+ e v+ hG +W+ Ia  l+gR++ ++r+rw+++
       KOO22568.1 307 RKEWTTSDDILIRESVHTHGFKWRVIAALLPGRSDDAVRDRWNRL 351
                      789***************************************986 PP

  == domain 2  score: 45.7 bits;  conditional E-value: 1.2e-15
                      CSSSBHHHHHHHHHHHHHHTTCHHHHHHHHTSS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgkWteeEdelLleavkkhGnrWkkIaerlggRtekqcrsrwrn 44 
                      r +W+ +Ede ++  v ++G +W +Ia+ l+gRte ++r+r+ +
       KOO22568.1 409 RVSWSRQEDETIVHMVSEYGHKWGRIAQQLPGRTEHAIRNRYSR 452
                      689**************************************976 PP

>> Myb_DNA-bind_6  Myb-like DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.6   0.0   2.5e-09   1.1e-05       1      44 [.     310     352 ..     310     372 .. 0.90
   2 !   27.2   0.0   7.4e-10   3.3e-06       1      43 [.     412     453 ..     412     466 .. 0.91

  Alignments for each domain:
  == domain 1  score: 25.6 bits;  conditional E-value: 2.5e-09
  Myb_DNA-bind_6   1 WteeEdeiLlklvekygndWknIaealnrRtpkqcfdrwknkLr 44 
                     Wt  +d ++++ v ++g++W+ Ia  l+ R+  +++drw++ L+
      KOO22568.1 310 WTTSDDILIRESVHTHGFKWRVIAALLPGRSDDAVRDRWNR-LN 352
                     99999999*******************55************.86 PP

  == domain 2  score: 27.2 bits;  conditional E-value: 7.4e-10
  Myb_DNA-bind_6   1 WteeEdeiLlklvekygndWknIaealnrRtpkqcfdrwknkL 43 
                     W+ +Ede+++  v++yg +W  Ia++l+ Rt  ++++r+ + L
      KOO22568.1 412 WSRQEDETIVHMVSEYGHKWGRIAQQLPGRTEHAIRNRYSR-L 453
                     ***************************55**********99.6 PP

>> Myb_DNA-bind_7  Myb DNA-binding like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.9   0.0   7.2e-05      0.32       6      51 ..     305     350 ..     301     371 .. 0.86
   2 !   14.3   0.0   6.1e-06     0.027       7      51 ..     408     452 ..     404     455 .. 0.93

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 7.2e-05
  Myb_DNA-bind_7   6 kktkkWskeetekFYkaLsqfGtDFsliaklfpkrtrrqlKlKFkk 51 
                     +++k+W++++  +  + +++ G  + +ia+l+p+r+++ ++ ++++
      KOO22568.1 305 AERKEWTTSDDILIRESVHTHGFKWRVIAALLPGRSDDAVRDRWNR 350
                     5789*************************************99987 PP

  == domain 2  score: 14.3 bits;  conditional E-value: 6.1e-06
  Myb_DNA-bind_7   7 ktkkWskeetekFYkaLsqfGtDFsliaklfpkrtrrqlKlKFkk 51 
                     ++ +Ws +e e   +++s++G  +  ia+ +p+rt + +++++++
      KOO22568.1 408 ERVSWSRQEDETIVHMVSEYGHKWGRIAQQLPGRTEHAIRNRYSR 452
                     6789***************************************86 PP

>> SLIDE  SLIDE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.5   0.0      0.27   1.2e+03      47      75 ..     305     332 ..     300     336 .. 0.79
   2 ?   11.4   0.0   5.6e-05      0.25      46      79 ..     406     438 ..     399     463 .. 0.84

  Alignments for each domain:
  == domain 1  score: -0.5 bits;  conditional E-value: 0.27
       SLIDE  47 kgkkeyteeeDrfllvllakyGygnyeki 75 
                 +++ke+t+  D  +   ++ +G++ ++ i
  KOO22568.1 305 AERKEWTTSDDILIRESVHTHGFK-WRVI 332
                 45667*****************97.7666 PP

  == domain 2  score: 11.4 bits;  conditional E-value: 5.6e-05
       SLIDE  46 nkgkkeyteeeDrfllvllakyGygnyekikkei 79 
                 + ++++++ +eD+ +++++++yG++ + +i +++
  KOO22568.1 406 KPERVSWSRQEDETIVHMVSEYGHK-WGRIAQQL 438
                 556788*****************87.99998876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (483 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       448  (0.0249875); expected 358.6 (0.02)
Passed bias filter:                      302  (0.0168442); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.51u 0.26s 00:00:00.77 Elapsed: 00:00:00.44
# Mc/sec: 3327.51
//
Query:       KOO22569.1  [L=292]
Description: protein tob1 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.3e-16   60.4   0.0    2.3e-16   59.7   0.0    1.3  1  BTG       BTG family


Domain annotation for each model (and alignments):
>> BTG  BTG family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.7   0.0   1.3e-20   2.3e-16       3     109 ..       8     113 ..       6     119 .. 0.84

  Alignments for each domain:
  == domain 1  score: 59.7 bits;  conditional E-value: 1.3e-20
                 HHHHHHHHHHHTTTBT..TB-HHHHHHHHHHHHHHHHHHHHTT--TTSTTTTHHHH-E....ETTT-THHHHHHHCTT--..HHHHHHH..S-TTEEEE CS
         BTG   3 eEiaaavnFlvsllkkskklerekveaFaeeLeelLeerykehWypekPerGsayRcirinkkekldpvlekaaeesgls..veeleel..lpeeltlw 97 
                 +E+a a+ ++++ l++    ++++ + F ++L+elL +ry++hWyp++P+rG a+R++  ++ + +dp+l +aa+++g +   e++ ++     e+t w
  KOO22569.1   8 HEVAVAATWFAEQLFE----PNDQRSIFCDRLQELLIARYQGHWYPDEPHRGCAFRSLL-STVNAMDPLLLRAADATGHRgvQESFMRCfsDAGEVTCW 101
                 69**************....99************************************9.55599**********99876212344445333569**** PP

                 EETTEEEEECTT CS
         BTG  98 vDPgeVsvrige 109
                 ++PgeV v  g+
  KOO22569.1 102 INPGEVKVLRGR 113
                 ******987774 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (292 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       287  (0.0160076); expected 358.6 (0.02)
Passed bias filter:                      199  (0.0110993); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.24s 00:00:00.67 Elapsed: 00:00:00.40
# Mc/sec: 2186.07
//
Query:       KOO22570.1  [L=516]
Description: wd40 repeat-like protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.4e-07   31.3   0.9       0.34   11.9   0.1    4.4  4  WD40      WD domain, G-beta repeat
  ------ inclusion threshold ------
      0.024   14.6   0.1         13    5.9   0.0    3.2  3  SsgA      Streptomyces sporulation and cell division protein,


Domain annotation for each model (and alignments):
>> WD40  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.1   0.1      0.23   2.1e+03      19      31 ..      32      44 ..      18      51 .. 0.72
   2 !   11.9   0.1   3.8e-05      0.34       5      38 .]      60      96 ..      57      96 .. 0.74
   3 !    8.1   0.0   0.00058       5.2      22      37 ..     128     143 ..     122     144 .. 0.72
   4 !    5.9   0.0    0.0029        26       6      37 ..     156     189 ..     151     190 .. 0.78

  Alignments for each domain:
  == domain 1  score: -0.1 bits;  conditional E-value: 0.23
                ETTSSEEEEEETT CS
        WD40 19 spdgawlasGsdD 31
                +  ++wla+G+  
  KOO22570.1 32 DVRSKWLACGTAS 44
                44789**999755 PP

  == domain 2  score: 11.9 bits;  conditional E-value: 3.8e-05
                EEEESSSSEEEEE...EETTSSEEEEEETTSEEEEEE CS
        WD40  5 rtltGHssvtsla...fspdgawlasGsdDgtvriWd 38
                 +l+GH+svt++       d++ ++s+s D++ r+W+
  KOO22570.1 60 VKLSGHTSVTGFVrltALCDSPRVVSSSFDKSARLWS 96
                5799**88876655555555566778888*******5 PP

  == domain 3  score: 8.1 bits;  conditional E-value: 0.00058
                 SSEEEEEETTSEEEEE CS
        WD40  22 gawlasGsdDgtvriW 37 
                 ++ +a G+ Dgtvr+W
  KOO22570.1 128 SPRVAMGCGDGTVRVW 143
                 555554544******* PP

  == domain 4  score: 5.9 bits;  conditional E-value: 0.0029
                 EEE.SS.SSEEEEEEETTSSEEEEEETTSEEEEE CS
        WD40   6 tlt.GH.ssvtslafspdgawlasGsdDgtvriW 37 
                 tl+ +H   v  l+  pdg+ ++s s+Dg + +W
  KOO22570.1 156 TLRfAHkMYVGELRLAPDGSRMLSVSRDGELQLW 189
                 5555674448888899*******99********* PP

>> SsgA  Streptomyces sporulation and cell division protein, SsgA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.9   0.0    0.0014        13      44      72 ..     135     163 ..     130     172 .. 0.80
   2 ?    4.7   0.0    0.0033        30      27      58 ..     211     240 ..     195     260 .. 0.73
   3 ?   -1.5   0.0      0.28   2.6e+03      65      92 ..     480     507 ..     469     512 .. 0.73

  Alignments for each domain:
  == domain 1  score: 5.9 bits;  conditional E-value: 0.0014
                 EEETTEEEEEEE.ETTEEEEEEE--TT-- CS
        SsgA  44 ageGdVrvwPaereeedelvlelrspege 72 
                 +g+G Vrvw +++++  +++++lr +++ 
  KOO22570.1 135 CGDGTVRVWHSSSRKAGKALITLRFAHKM 163
                 9**********998889999988876655 PP

  == domain 2  score: 4.7 bits;  conditional E-value: 0.0033
                 EEEEEEHHHHHHHTTS-EEETTEEEEEEE.ET CS
        SsgA  27 vewvfaRelLaeGlrapageGdVrvwPaeree 58 
                 + w++  elL+ Gl + + +G +++w ++ ++
  KOO22570.1 211 AYWRL--ELLKSGLVGISARGSIHFWAWGASD 240
                 44544..8******************999643 PP

  == domain 3  score: -1.5 bits;  conditional E-value: 0.28
                 EE--TT--EEEEEEHHHHHHHHHHHHHH CS
        SsgA  65 elrspegeallelsaealarFLrrteal 92 
                  ++s + +a  el ++++++F++r +a 
  KOO22570.1 480 MMESVAAKAGRELGEASVRAFIKRHQAT 507
                 5566677777788899999999987765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (516 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       397  (0.0221429); expected 358.6 (0.02)
Passed bias filter:                      248  (0.0138323); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.52u 0.24s 00:00:00.76 Elapsed: 00:00:00.42
# Mc/sec: 3711.70
//
Query:       KOO22571.1  [L=1315]
Description: protein clec16a [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    9.7e-52  174.9   0.1    1.5e-51  174.3   0.1    1.3  1  FPL         Uncharacterised conserved protein
    2.1e-07   30.8   0.0    4.6e-07   29.7   0.0    1.5  1  CRAL_TRIO   CRAL/TRIO domain
    7.6e-06   25.0   1.7    8.9e-06   24.8   0.2    1.9  2  RAI16-like  Retinoic acid induced 16-like protein


Domain annotation for each model (and alignments):
>> FPL  Uncharacterised conserved protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  174.3   0.1   2.5e-55   1.5e-51       1     147 [.      64     238 ..      64     239 .. 0.92

  Alignments for each domain:
  == domain 1  score: 174.3 bits;  conditional E-value: 2.5e-55
         FPL   1 lreiaelliwgd.kneeeffevfleknileklveivkqk.vesevkvqllqtlsillqnikkktslyyllSnnhinelie.lefdfedeellayYislL 96 
                 lr+iae++iwgd ++++++fe+fle+n+l+ + ++++q+ + s+vk+qllqtls+l+qni+   s+y++lSnnhin+li  + fd+++eel+a Y+slL
  KOO22571.1  64 LRNIAEIIIWGDqQHDPAIFECFLENNMLAIFWRFLEQEdTPSSVKQQLLQTLSLLIQNIDAGPSVYFILSNNHINDLIRhQGFDLTNEELIANYVSLL 162
                 79**********999************************9***************************************9456**************** PP

         FPL  97 ktlslkldketvqfffneka.........................aeFpLyseaikfvnhkdsmvriavrtivLni 147
                 k+++l+ldk+tvqff+ e+                          ++F Ly+ea+k+ +h+d+mvr+avrtivL+i
  KOO22571.1 163 KAIALRLDKDTVQFFISEEPeptaapagddeasstvheqipprtvTRFALYEEALKLWSHEDRMVRTAVRTIVLSI 238
                 *****************5555666666666667777777777777*****************************98 PP

>> CRAL_TRIO  CRAL/TRIO domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.7   0.0   7.7e-11   4.6e-07      15     158 ..    1158    1311 ..    1148    1312 .. 0.88

  Alignments for each domain:
  == domain 1  score: 29.7 bits;  conditional E-value: 7.7e-11
   CRAL_TRIO   15 Dkegrpvlylrlgrfdpk.kls.leelvralvlvlerllkelee....dgqvegvtvviDlkgls.....lskmlwkp.isllkkilkilqdnyper 99  
                  Dk g+ v++ +++ fd +  ++ ++e+++a +   e l + ++e    +g+++ +  v Dl+g+s     ++  + k+   l+k++ k ++d yp +
  KOO22571.1 1158 DKGGNLVYIEVPSAFDAAaMSEmEAEYIEAEFRAHELLQLVIDElsrrQGRMCLIFRVLDLHGFSltgslFASAEVKQgEALVKQVGKEVKDAYPTT 1254
                  999999*999********6333478*******999999988888977778888888899******888876777778888899************** PP

   CRAL_TRIO  100 lgkilivnaPklfkfafklvkpfldektreKikfvspsnteatlekyidpeqlpkelGG 158 
                    k +++naP  ++fa  lv ++++++ r+K ++ +  +   +l+k i+p +lp++lGG
  KOO22571.1 1255 TFKNFLINAPA-ASFAGPLVAALVPKRSRDKTVIKGA-DYAPELHKWIEPANLPQKLGG 1311
                  **********6.89********************965.6657***************** PP

>> RAI16-like  Retinoic acid induced 16-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.8   0.2   1.5e-09   8.9e-06       2     299 ..      83     417 ..      82     439 .. 0.74
   2 ?   -3.4   0.1      0.57   3.4e+03     134     164 ..     488     527 ..     483     555 .. 0.62

  Alignments for each domain:
  == domain 1  score: 24.8 bits;  conditional E-value: 1.5e-09
  RAI16-like   2 leyllknkiletLctlgea.dkpegvkkevlkfytkLlsklse.plLphesvhrpllkLllsssgsstsssdvekelvsLLetlcaklrkdpnLleffl 98 
                  e +l+n++l+   +  e+ d p  vk++ l++ + L++++   p +  +     + +L ++ +g  + ++++ +++vsLL++++  l kd   ++ff 
  KOO22571.1  83 FECFLENNMLAIFWRFLEQeDTPSSVKQQLLQTLSLLIQNIDAgPSVYFILSNNHINDL-IRHQGFDLTNEELIANYVSLLKAIALRLDKDT--VQFFI 178
                 5789*********99888879********************87367777777889****.888888888***************99888875..89999 PP

  RAI16-like  99 enkskqqs.....eesesatkesaaatekenfilfslLlgyvhseGrigerAreaLllllelaseeetaekpliestdlcp................vl 176
                  ++ + +      +e +s+ +e+   ++ ++f l +  l++  +e r+   A   ++l +     +++a + +i ++ l p                 +
  KOO22571.1 179 SEEPEPTAapagdDEASSTVHEQIPPRTVTRFALYEEALKLWSHEDRMVRTAVRTIVLSICRV--DDAAVRAFISRSPLLPrqlnaslrsdcaaltkAI 275
                 999988668887544444444455566789**********************99998877776..7888888888899999877777777776333322 PP

  RAI16-like 177 ateLgalYslLpkkldpl.....etiqssdwsidekistedlatfpg.keaLesFlslleFcqslikeahseiaeallk...lieesFLadvLePsLle 266
                 a+  ++   + p     +     + + s  +++   i +  +++ +  + +L+++l  l F+ ++ + a ++++   ++   ++ ++F  +v+ + L  
  KOO22571.1 276 AAVSMGSRTAAP-----AaapaaAPVPSGPYGLCATIVPPTSSELSSmEGQLQHLLDELYFVHDVLDAAATNVKPLCARlraALFSQFVMPVIVQPLAS 369
                 222222223333.....233335677777777755666556665555579*********************9997655511167788999999999999 PP

  RAI16-like 267 tse...............gssltvlayLkrilrslespalleqvlsFL 299
                 +s+                  l +l+ L+  l+ + +p+ll  +l+ L
  KOO22571.1 370 VSServgseavahemqqtLPRLVALLVLSHCLSVFGHPPLLMSILTLL 417
                 988775554444443222222344555555555555555555555555 PP

  == domain 2  score: -3.4 bits;  conditional E-value: 0.57
  RAI16-like 134 yvhseGrigerAreaLllllelaseeetae.........k 164
                 ++ +  r + +A+ aLl  l +++ ++t++          
  KOO22571.1 488 LCSTDERTCFFACCALLSALRCTAPSSTGGgkpaaltghA 527
                 5666778888999999999888877777664554444442 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1315 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       639  (0.0356406); expected 358.6 (0.02)
Passed bias filter:                      493  (0.0274974); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.83u 0.30s 00:00:01.12 Elapsed: 00:00:00.46
# Mc/sec: 8642.28
//
Query:       KOO22572.1  [L=749]
Description: guanylate-binding n-terminal domain containing protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.5e-61  208.0   0.0    2.1e-61  207.5   0.0    1.2  1  GBP       Guanylate-binding protein, N-terminal domain
    1.3e-16   60.9   0.0    1.3e-16   60.9   0.0    3.7  4  GBP_C     Guanylate-binding protein, C-terminal domain
  ------ inclusion threshold ------
        6.3    6.5  30.7         14    5.3  30.7    1.6  1  FAM184    Family with sequence similarity 184, A and B


Domain annotation for each model (and alignments):
>> GBP  Guanylate-binding protein, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  207.5   0.0   3.5e-65   2.1e-61       3     253 ..      15     281 ..      13     288 .. 0.90

  Alignments for each domain:
  == domain 1  score: 207.5 bits;  conditional E-value: 3.5e-65
                 EEEE-HHHHHHHCTTTSBEEEEEEEEBTTSSHHHHHHHHHT.BSSSSESSSCSSST-SSEEEESCE.........-SSSTCEEEEEEEEECBTTTTTSS CS
         GBP   3 slelneealeileaidqkvvvvaivGlyRkGksfLlnklar.kkkGFslrstvesetkGiliWcep.........hpkkekvalvLlDteGlgDveksd 91 
                 +l + eea + l  ++ +v vva++G+yR+Gksf+ln+la+   +GF ++ +v+++tkGi++W  p         +p+ + + l+LlDteGl+ +++++
  KOO22572.1  15 RLFVTEEAKAYLGEVNSTVGVVAVAGIYRTGKSFILNQLAGtAGTGFGVGNSVQAKTKGIWLWGSPlhleqtdatDPSAP-QELLLLDTEGLQSIDQTE 112
                 67899999999*99**************************94469**********************9998877555554.5799*********88765 PP

                 HHHHHHHHHHHHHH-SEEEEEEESSSSHHHHHHHHHHHHHHHHHHHT...HHHHCCHHCSSTTCEEEEEEEECESSTT.TSTSCHHHHHHHHHHHTCCH CS
         GBP  92 vkddatiFaLavllssvfvYnssqtiqedaleqLqlvtEltelirak...edrvadeeefvkfFpslvflvRDfslel.eaegklltedeyLekrLklk 186
                    da+iF+La+ll+s fvYns + i++ a++qL lv  lt++i ++    ++   ++  + fFp++ +l+RDfslel +++g ++t+d yLe+ L+ +
  KOO22572.1 113 -GHDAKIFSLAILLASAFVYNSKNAIDNAAIDQLSLVAQLTQRILVHaegGGDRGGADVLAPFFPKFTWLLRDFSLELvDVNGAAQTPDAYLEECLQPS 210
                 .5679***************************************99976767788899999****************85799***************** PP

                 CSSSHHHHHHHHHHHHHHHHESEEEEEEEE-SSHHHHC....STCGCSCBGGGS-HHHHHHHHHHHHHHHS CS
         GBP 187 kgqdeklqkanllRkcirkfFpkrkcFvldrPglkkal....nakleelkedeldeeFkkqlkelvsylls 253
                 kg+++ +q++n +R  ir++F++r+c  l +P+   +l    +++l++ +++ l+++F+  ++el  +ll 
  KOO22572.1 211 KGTSAAIQEQNATRSAIRTLFTERSCIALSHPTMGTKLpasaLKELDQTPLSALNPDFVAGIQELKARLLG 281
                 ********************************99887632225689999***************9998886 PP

>> GBP_C  Guanylate-binding protein, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.9   0.0   2.2e-20   1.3e-16       1     143 [.     291     437 ..     291     443 .. 0.90
   2 ?   -0.9   6.6      0.14   8.4e+02     201     277 ..     513     587 ..     504     600 .. 0.56
   3 ?   -0.2  15.0     0.087   5.2e+02     193     290 ..     555     656 ..     543     659 .. 0.71
   4 ?   -7.0  21.1         3   1.8e+04     178     273 ..     644     727 ..     633     746 .. 0.40

  Alignments for each domain:
  == domain 1  score: 60.9 bits;  conditional E-value: 2.2e-20
       GBP_C   1 ggitvtGkrLasLvqtYvdaInsGavPclenavlalaqiEnsaAvqkAiahYeeqmeqkv....klptetlqelldlhrdcekeAievFmkrsfkd..e 93 
                 gg  +tG+ L +L+ +Y daIn Ga+P +++a  a+   E+++A ++A+  Y    +  +    k+p e   + l+ h+   + A++ F   +++d  +
  KOO22572.1 291 GGPALTGRTLLHLAAQYCDAINDGALPNISSAFSAVIASECRRALDEAARLYVDGASAAMdppdKPPDE--AAWLEEHASLHESALHRFKGIAMGDgpA 387
                 7889************************************************77666666111155556..6789*********************999 PP

       GBP_C  94 nqkFqkeLkeslekkkedflkkneeasekkCsallqklseeleekikqgt 143
                   + q +L e+l+++k++        se+ C  l+  l e+  ++ +++t
  KOO22572.1 388 AAEAQAKLLEQLAAEKGKVDALLRARSEALCLRLVAALAEQFGQRAREAT 437
                 99*************************************99999888775 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 0.14
       GBP_C 201 akekeieaeqakaeaaeaekelleekqkeeeqrmeakeksleehvkqLkekleeereklleeqerllekklkeqeel 277
                 ++e++ +a+ a+++aa a ++l++  +  + q+ e+        ++  +e+l +er+ + + + ++    + e ++ 
  KOO22572.1 513 EREQAHAAAAARQAAAAARTALVA--ATGRAQKAEKLAATSAADLRATREQLDTERADWTARSAEMQRAAEMERAKS 587
                 334444444444444444444444..444555555555566666666668888888888777766665555544443 PP

  == domain 3  score: -0.2 bits;  conditional E-value: 0.087
       GBP_C 193 lqtdkaltakeke..ieaeqakaeaaeaekelleekqkeeeqrmeakeksleehvkqLkekleeereklleeqerllekklk..eqeellkegfkeeae 287
                 l + ++  ++e++   + + + + aae+e++     ++e    ++a + + +  ++ L+e+le+er+k ++  +++l+ ++   ++ +ll e ++ee e
  KOO22572.1 555 LRATREQLDTERAdwTARSAEMQRAAEMERAKSVTANNEVVSALKAAMANRDAALASLREQLEAERNKCAAADQMMLALQTAsaKKDALLAEYLQEEIE 653
                 444444444444411455667778888888888888999999999999*******************99988888877665411445567777777777 PP

       GBP_C 288 sle 290
                 + e
  KOO22572.1 654 DSE 656
                 655 PP

  == domain 4  score: -7.0 bits;  conditional E-value: 3
       GBP_C 178 Lqeflkskeaveeailqtdkaltakekeieaeqakaeaaeaekelle.ekqkeeeqrmeakeksleehvkqLkekleeere.klleeqerllekklke 273
                 L e+l+             +++++ ek+ +a +    + eaek++l+ ek++ + ++ e+ e   + ++++ + kl +e+e kl   +++ lek+++ 
  KOO22572.1 644 LAEYLQ-------------EEIEDSEKAAAARNGS-HSKEAEKARLKaEKEAAKLKKAEEAEAAKKAKLAEKEAKLAAEKEaKLSPAEREFLEKERRA 727
                 444444.............4444444444332222.22222222222022222223333333333333333344455555533333333344444444 PP

>> FAM184  Family with sequence similarity 184, A and B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.3  30.7    0.0024        14      50     204 ..     539     710 ..     513     724 .. 0.78

  Alignments for each domain:
  == domain 1  score: 5.3 bits;  conditional E-value: 0.0024
      FAM184  50 dlkqkiaelee.sleqhekekrqalaefeqykrrveerelkleaehsqkvvelsreveevkrkFeeklrqfaqlqeqleqekeka.............. 133
                    qk+++l+  s+++  + ++q  +e   +  r++e++ ++e e ++ v++ ++ v ++k++  ++  ++a+l+eqle+e++k               
  KOO22572.1 539 GRAQKAEKLAAtSAADLRATREQLDTERADWTARSAEMQRAAEMERAKSVTANNEVVSALKAAMANRDAALASLREQLEAERNKCaaadqmmlalqtas 637
                 5567777776515677888999999******************************************************66665555666666655555 PP

      FAM184 134 ..Leelrkkh.reeveeLlkeqeaqsekllkeqekleekhkaeveklkeeveelekekkklveeyEeklakqka 204
                    + l +++ +ee+e+ +k+  a++ + +ke+ek++ k ++e +klk++ ee e+ kk   +e+E+kla+ k+
  KOO22572.1 638 akKDALLAEYlQEEIEDSEKAAAARNGSHSKEAEKARLKAEKEAAKLKKA-EEAEAAKKAKLAEKEAKLAAEKE 710
                 55666666664789**********************99999999999954.44444444444566777766554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (749 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2204  (0.122929); expected 358.6 (0.02)
Passed bias filter:                      518  (0.0288917); expected 358.6 (0.02)
Passed Vit filter:                       112  (0.00624686); expected 17.9 (0.001)
Passed Fwd filter:                        21  (0.00117129); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 1.02u 0.32s 00:00:01.34 Elapsed: 00:00:00.48
# Mc/sec: 4665.83
//
Query:       KOO22573.1  [L=688]
Description: nod3 protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    4.5e-14   51.2   6.7      0.022   14.8   0.1    5.9  6  LRR_6          Leucine Rich repeat
    7.9e-06   25.5   0.1    2.3e-05   24.0   0.1    1.9  1  SAP            SAP domain
  ------ inclusion threshold ------
       0.06   13.6   2.1        2.6    8.4   0.1    3.7  4  SpoU_sub_bind  RNA 2'-O ribose methyltransferase substrate bi
      0.069   13.5   7.8        4.3    7.8   0.2    4.4  4  HOASN          Haem-oxygenase-associated N-terminal helices
       0.13   12.7   3.1         10    6.7   0.0    4.1  5  LRR_4          Leucine Rich repeats (2 copies)


Domain annotation for each model (and alignments):
>> LRR_6  Leucine Rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.1         3   1.1e+04       5      11 ..     433     439 ..     432     440 .. 0.83
   2 ?   -0.5   0.0      0.49   1.8e+03      17      24 .]     536     543 ..     525     543 .. 0.66
   3 !   14.8   0.1   6.2e-06     0.022       2      24 .]     549     571 ..     548     571 .. 0.93
   4 !   12.8   0.0   2.6e-05     0.092       3      24 .]     578     599 ..     576     599 .. 0.86
   5 !   13.2   0.0   1.9e-05     0.069       4      24 .]     607     627 ..     604     627 .. 0.89
   6 !    8.9   0.0   0.00048       1.7       2      24 .]     633     655 ..     632     655 .. 0.93

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 3
       LRR_6   5 LteLdLs 11 
                 +t L+Ls
  KOO22573.1 433 VTVLNLS 439
                 799***9 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 0.49
       LRR_6  17 DeGaeaLa 24 
                 +eGa+a+a
  KOO22573.1 536 GEGAKAIA 543
                 49999997 PP

  == domain 3  score: 14.8 bits;  conditional E-value: 6.2e-06
       LRR_6   2 nthLteLdLsgNdIgDeGaeaLa 24 
                 n  LteL+L  N+Ig +Ga+a+a
  KOO22573.1 549 NAVLTELSLGANNIGVDGAKAIA 571
                 667******************98 PP

  == domain 4  score: 12.8 bits;  conditional E-value: 2.6e-05
       LRR_6   3 thLteLdLsgNdIgDeGaeaLa 24 
                   Lt+L L +N+IgD+Ga+a+a
  KOO22573.1 578 AVLTKLWLWDNKIGDVGAKAIA 599
                 5688888889**********98 PP

  == domain 5  score: 13.2 bits;  conditional E-value: 1.9e-05
       LRR_6   4 hLteLdLsgNdIgDeGaeaLa 24 
                  +t+L L  N+Ig eGa+a+a
  KOO22573.1 607 VVTTLVLYNNNIGPEGAKAIA 627
                 57999999***********98 PP

  == domain 6  score: 8.9 bits;  conditional E-value: 0.00048
       LRR_6   2 nthLteLdLsgNdIgDeGaeaLa 24 
                 n  Lt LdL  N Ig +Ga+a+a
  KOO22573.1 633 NAVLTRLDLDANYIGVDGAKAIA 655
                 6679*****************98 PP

>> SAP  SAP domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.0   0.1   6.6e-09   2.3e-05       1      33 [.     165     197 ..     165     197 .. 0.94

  Alignments for each domain:
  == domain 1  score: 24.0 bits;  conditional E-value: 6.6e-09
                 HTT--HHHHHHHHHHTT--TTS-HHHHHHHHHH CS
         SAP   1 lskltVaeLKeeLkkrGLptsGkKaeLieRLke 33 
                 +s  +V+eL+ +L+k+GL t G+K +Li RL+e
  KOO22573.1 165 YSRIRVQELRWKLRKLGLTTDGTKPVLIGRLIE 197
                 78889***********************99986 PP

>> SpoU_sub_bind  RNA 2'-O ribose methyltransferase substrate binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.4   0.0      0.22   7.9e+02       3      23 ..     537     557 ..     525     562 .. 0.82
   2 ?    8.4   0.1   0.00074       2.6       4      45 ..     566     608 ..     564     612 .. 0.77
   3 ?    3.9   0.1     0.019        67       4      42 ..     594     633 ..     593     640 .. 0.76
   4 ?   -0.1   0.0      0.32   1.1e+03       3      21 ..     621     639 ..     620     663 .. 0.70

  Alignments for each domain:
  == domain 1  score: 0.4 bits;  conditional E-value: 0.22
  SpoU_sub_bind   3 yGlhaVleaLksgrriekllv 23 
                    +G +a+ eaLk +  +++l +
     KOO22573.1 537 EGAKAIAEALKVNAVLTELSL 557
                    799999999999876777655 PP

  == domain 2  score: 8.4 bits;  conditional E-value: 0.00074
  SpoU_sub_bind   4 GlhaVleaLksgrriekllvtegradkr.leellklakkrgik 45 
                    G +a+ eaLk +  ++kl++ +++ ++   + + +++k + + 
     KOO22573.1 566 GAKAIAEALKVNAVLTKLWLWDNKIGDVgAKAIAEALKVNAVV 608
                    889*********99*********66665356666666666554 PP

  == domain 3  score: 3.9 bits;  conditional E-value: 0.019
  SpoU_sub_bind   4 GlhaVleaLksgrriekllvtegradkr.leellklakkr 42 
                    G +a+ eaLk +  +++l++ +++ +++  + + +++k +
     KOO22573.1 594 GAKAIAEALKVNAVVTTLVLYNNNIGPEgAKAIAEALKVN 633
                    8999*******99899999999988887445555555554 PP

  == domain 4  score: -0.1 bits;  conditional E-value: 0.32
  SpoU_sub_bind   3 yGlhaVleaLksgrriekl 21 
                    +G +a+ eaLk +  +++l
     KOO22573.1 621 EGAKAIAEALKVNAVLTRL 639
                    7889999999987655555 PP

>> HOASN  Haem-oxygenase-associated N-terminal helices
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   0.0      0.48   1.7e+03      18      59 ..     201     243 ..     194     264 .. 0.72
   2 ?    3.0   0.1     0.039   1.4e+02      17      41 ..     537     561 ..     530     563 .. 0.83
   3 ?    7.8   0.2    0.0012       4.3       6      50 ..     555     598 ..     551     616 .. 0.82
   4 ?    5.7   0.1    0.0056        20      13      42 ..     617     646 ..     610     659 .. 0.83

  Alignments for each domain:
  == domain 1  score: -0.6 bits;  conditional E-value: 0.48
                 HHHHHHH.HTSTT--HHHHHHHHHHHHHHHHHHHTT-HHHHHH CS
       HOASN  18 eaallad.alkvgasldqidlalekllalaekGlkGdasayaa 59 
                 +aa +a+ a+++  s d ++ al  +   + + lkG  +++ +
  KOO22573.1 201 AAASIAEpAFQPSFSADAMEAALGLVDVATLAELKGVTRSWRT 243
                 4444444389999999999999998888888889987766544 PP

  == domain 2  score: 3.0 bits;  conditional E-value: 0.039
                 HHHHHHHHHTSTT--HHHHHHHHHH CS
       HOASN  17 eeaalladalkvgasldqidlalek 41 
                 e a+ +a+alkv+a l  + l +++
  KOO22573.1 537 EGAKAIAEALKVNAVLTELSLGANN 561
                 66889**********9999888776 PP

  == domain 3  score: 7.8 bits;  conditional E-value: 0.0012
                 SHHHHHHT--SHHHHHHHHHTSTT--HHHHHHHHHHHHHHHHHHH CS
       HOASN   6 lslPalqnlpieeaalladalkvgasldqidlalekllalaekGl 50 
                 lsl a  n+ ++ a+ +a+alkv+a l ++ l  +k+  + +k +
  KOO22573.1 555 LSLGAN-NIGVDGAKAIAEALKVNAVLTKLWLWDNKIGDVGAKAI 598
                 566666.99******************999999999888887766 PP

  == domain 4  score: 5.7 bits;  conditional E-value: 0.0056
                 T--SHHHHHHHHHTSTT--HHHHHHHHHHH CS
       HOASN  13 nlpieeaalladalkvgasldqidlalekl 42 
                 n+  e a+ +a+alkv+a l ++dl ++ +
  KOO22573.1 617 NIGPEGAKAIAEALKVNAVLTRLDLDANYI 646
                 666788999**************9988766 PP

>> LRR_4  Leucine Rich repeats (2 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.1      0.83     3e+03       3      10 ..     433     440 ..     431     445 .. 0.72
   2 ?    1.0   0.0      0.18   6.4e+02      25      35 ..     552     561 ..     525     566 .. 0.56
   3 ?    6.7   0.0    0.0028        10       3      39 ..     552     593 ..     550     603 .. 0.64
   4 ?    6.1   0.1    0.0045        16       3      35 ..     580     617 ..     578     620 .. 0.63
   5 ?    2.8   0.1     0.047   1.7e+02       4      36 ..     609     646 ..     606     650 .. 0.60

  Alignments for each domain:
  == domain 1  score: -1.1 bits;  conditional E-value: 0.83
                 --EEE--S CS
       LRR_4   3 LevLdLsn 10 
                  +vL+Lsn
  KOO22573.1 433 VTVLNLSN 440
                 57777776 PP

  == domain 2  score: 1.0 bits;  conditional E-value: 0.18
                 --EEE-.-S-- CS
       LRR_4  25 LkeLdLsgNnl 35 
                 L+eL+L  N +
  KOO22573.1 552 LTELSLGAN-N 561
                 666777444.2 PP

  == domain 3  score: 6.7 bits;  conditional E-value: 0.0028
                 --EEE--SS---E-S-...HH...H.-TT--EEE-.-S-----G CS
       LRR_4   3 LevLdLsnNqltdipl...le...k.lpnLkeLdLsgNnlitdl 39 
                 L++L+L+ N++  +++   ++   k +  L++L+L++N +i+d+
  KOO22573.1 552 LTELSLGANNIG-VDGakaIAealKvNAVLTKLWLWDN-KIGDV 593
                 778888855666.4443332244442333888888888.77776 PP

  == domain 4  score: 6.1 bits;  conditional E-value: 0.0045
                 --EEE--SS---E-S-..HH...H.-TT--EEE-.-S-- CS
       LRR_4   3 LevLdLsnNqltdipl..le...k.lpnLkeLdLsgNnl 35 
                 L++L+L +N++ d++   ++   k +   ++L L  Nn+
  KOO22573.1 580 LTKLWLWDNKIGDVGAkaIAealKvNAVVTTLVL-YNNN 617
                 8999999999999988652233332233666766.4444 PP

  == domain 5  score: 2.8 bits;  conditional E-value: 0.047
                 -EEE--SS---E-S-..HH...H.-TT--EEE-.-S--- CS
       LRR_4   4 evLdLsnNqltdipl..le...k.lpnLkeLdLsgNnli 36 
                 ++L L nN++   +   ++   k +  L+ LdL  N +i
  KOO22573.1 609 TTLVLYNNNIGPEGAkaIAealKvNAVLTRLDLDAN-YI 646
                 799999999983333442233332333777777444.55 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (688 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       427  (0.0238162); expected 358.6 (0.02)
Passed bias filter:                      304  (0.0169558); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.61u 0.28s 00:00:00.89 Elapsed: 00:00:00.44
# Mc/sec: 4703.85
//
Query:       KOO22574.1  [L=124]
Description: hypothetical protein Ctob_000063 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (124 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       271  (0.0151152); expected 358.6 (0.02)
Passed bias filter:                      193  (0.0107647); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.26s 00:00:00.64 Elapsed: 00:00:00.43
# Mc/sec: 870.28
//
Query:       KOO22575.1  [L=121]
Description: hypothetical protein Ctob_000068 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
  ------ inclusion threshold ------
        0.1   12.6   0.0       0.13   12.3   0.0    1.1  1  LAGLIDADG_2  LAGLIDADG DNA endonuclease family


Domain annotation for each model (and alignments):
>> LAGLIDADG_2  LAGLIDADG DNA endonuclease family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   7.1e-06      0.13      26      58 ..      72     104 ..      64     117 .. 0.88

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 7.1e-06
                  EEEE..S-HHHHHHHHHHTGGG--S--EEEEEE CS
  LAGLIDADG_2  26 efkqskkhkeYllyvfellkeyllsnpkivkrk 58 
                   ++q++++k+Yl +++ ll++++ ++ k +k +
   KOO22575.1  72 TLNQEMCEKAYLCHKCLLLNNLCFCSMKTKKAR 104
                  5799**********************9998765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (121 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       549  (0.0306208); expected 358.6 (0.02)
Passed bias filter:                      245  (0.013665); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.26s 00:00:00.62 Elapsed: 00:00:00.41
# Mc/sec: 890.53
//
Query:       KOO22576.1  [L=289]
Description: hypothetical protein Ctob_000069 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
        2.9    8.3   5.9        1.4    9.3   0.2    2.8  4  DUF2834   Protein of unknown function (DUF2834)


Domain annotation for each model (and alignments):
>> DUF2834  Protein of unknown function (DUF2834)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.0      0.53   9.4e+03      55      72 ..      49      66 ..      44      77 .. 0.58
   2 ?    9.3   0.2   7.7e-05       1.4      64      94 ..     135     164 ..     125     166 .. 0.78
   3 ?   -3.2   0.0      0.62   1.1e+04      61      84 ..     201     225 ..     199     226 .. 0.63
   4 ?    0.9   0.1     0.033     6e+02      64      86 ..     248     270 ..     242     271 .. 0.85

  Alignments for each domain:
  == domain 1  score: -3.0 bits;  conditional E-value: 0.53
     DUF2834 55 llvfivvegrrlgvkrrw 72
                 + f+ ++g r+    + 
  KOO22576.1 49 ACYFVHADGTRQTADGVT 66
                556667777766554433 PP

  == domain 2  score: 9.3 bits;  conditional E-value: 7.7e-05
     DUF2834  64 rrlgvkrrwlyilltllvgvsfalPlfLalr 94 
                 +r+++k+   ++ ++ lv +s+a+P fLalr
  KOO22576.1 135 QRRQMKNLA-AFTAGALVYLSVAMPAFLALR 164
                 455666655.556667799***********9 PP

  == domain 3  score: -3.2 bits;  conditional E-value: 0.62
     DUF2834  61 vegrrlgvkrrw.lyilltllvgvs 84 
                 ++++r   +r+  +y+ ++l v +s
  KOO22576.1 201 WDAHRIDRRRNVsIYVEAALPVTFS 225
                 5667766666666777777666665 PP

  == domain 4  score: 0.9 bits;  conditional E-value: 0.033
     DUF2834  64 rrlgvkrrwlyilltllvgvsfa 86 
                 r    ++rw++  lt++ gv+++
  KOO22576.1 248 RTSSGEHRWVIARLTVTSGVATG 270
                 6667789*************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (289 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       365  (0.0203581); expected 358.6 (0.02)
Passed bias filter:                      281  (0.0156729); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.23s 00:00:00.67 Elapsed: 00:00:00.40
# Mc/sec: 2156.65
//
Query:       KOO22577.1  [L=221]
Description: hypothetical protein Ctob_000048 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
     0.0081   16.2  10.0     0.0081   16.2  10.0    2.8  2  TPR_MLP1_2   TPR/MLP1/MLP2-like protein
  ------ inclusion threshold ------
       0.02   15.4  11.9       0.02   15.4  11.9    2.9  2  APG6_N       Apg6 coiled-coil region
       0.27   10.6  33.0       0.13   11.6   9.0    3.1  2  Tropomyosin  Tropomyosin
        1.6    8.7   4.3       0.65    9.9   0.5    2.2  2  DUF2721      Protein of unknown function (DUF2721)
        3.5    7.8  34.5       0.61   10.3  11.0    2.9  3  ATG16        Autophagy protein 16 (ATG16)
        7.3    7.1  28.5       0.29   11.6   4.9    4.0  4  KELK         KELK-motif containing domain of MRCK Ser/Thr pro


Domain annotation for each model (and alignments):
>> TPR_MLP1_2  TPR/MLP1/MLP2-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2  10.0   2.7e-06    0.0081      40     102 ..       9      71 ..       2      84 .. 0.90
   2 ?   -6.9  14.3         6   1.8e+04      20      85 ..     110     175 ..      89     208 .. 0.54

  Alignments for each domain:
  == domain 1  score: 16.2 bits;  conditional E-value: 2.7e-06
  TPR_MLP1_2  40 eaqqkYerelvkhaedvkelqalreelnelkaeiaelkaeaesakaeleeseesweeqkeele 102
                  a+ + e+   k ++  kel+++ +el+e+++e ++l+ae +sa+++l+e  +  + +k  l 
  KOO22577.1   9 SAESDLENARAKRSDPEKELAQIEKELEEVQSEHRQLEAEKDSAEKQLKELMARFKLRKALLH 71 
                 68899999999999***************************************9999998886 PP

  == domain 2  score: -6.9 bits;  conditional E-value: 6
  TPR_MLP1_2  20 aeaklqklqedlekqaeiakeaqqkYerelvkhaedvkelqalreelnelkaeiaelkaeaesaka 85 
                  +a++qk+  d +k ++  ++  +   +el+++++   el+++  +l+  +++++ +  ++ +++a
  KOO22577.1 110 MDAEMQKAVVDRQKAEAAKRKSDEMLTKELTLKKDGEMELRDAQRQLAADQERAEAAARRVAALQA 175
                 445555555555555555555555666666666666666666666664433333333333333332 PP

>> APG6_N  Apg6 coiled-coil region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.4  11.9   6.6e-06      0.02      40      90 ..      13      62 ..       2      82 .. 0.54
   2 ?   -5.8  13.8         6   1.8e+04      28      99 ..     124     164 ..      89     214 .. 0.47

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 6.6e-06
      APG6_N 40 keeekqdeeleeleeeleklekeeeelleeLkelekereeleaelaaleee 90
                + e+  + ++ + e+el+++eke ee ++e ++le+e+++ e++l++l + 
  KOO22577.1 13 DLEN-ARAKRSDPEKELAQIEKELEEVQSEHRQLEAEKDSAEKQLKELMAR 62
                1111.3444555555555555555555555555555555555555555443 PP

  == domain 2  score: -5.8 bits;  conditional E-value: 6
      APG6_N  28 YeeflkklkkekkeeekqdeeleeleeeleklekeeeelleeLkelekereeleaelaaleeelealeeeee 99 
                  e+              +++++e l +el                    +++ e el++++++l+a +e  e
  KOO22577.1 124 AEAA-------------KRKSDEMLTKELTL------------------KKDGEMELRDAQRQLAADQERAE 164
                 1111.............11222222222111..................11111111111111111111111 PP

>> Tropomyosin  Tropomyosin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   9.0   4.4e-05      0.13     124     173 ..       9      58 ..       2      77 .. 0.83
   2 ?    1.6  16.0     0.051   1.5e+02     127     205 ..      91     176 ..      84     206 .. 0.75

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 4.4e-05
  Tropomyosin 124 vvesdLeraeeraeaaeskiveLeeeLkvvgnnlksLevseekaserede 173
                    esdLe a+++    e++ +++e eL+ v+ + ++Le++++ a ++ +e
   KOO22577.1   9 SAESDLENARAKRSDPEKELAQIEKELEEVQSEHRQLEAEKDSAEKQLKE 58 
                  5799**********************************999988766554 PP

  == domain 2  score: 1.6 bits;  conditional E-value: 0.051
  Tropomyosin 127 sdLeraeeraeaaeskiveLeeeLkvvgnnlksLevseeka...sere....deyeeeirtLeekLkeaeeRaeeAErsvqkLeke 205
                  + +e+a+   e +e +i  +  e++ +    ++ e+++ k+    ++e    ++ e e+r+ + +L++ +eRae+A r+v+ L+++
   KOO22577.1  91 TRVEEAKRLKEGSERRIFMMDAEMQKAVVDRQKAEAAKRKSdemLTKEltlkKDGEMELRDAQRQLAADQERAEAAARRVAALQAQ 176
                  5578888888899999999999999888888888887655411156662222455789*************************986 PP

>> DUF2721  Protein of unknown function (DUF2721)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   0.5   0.00022      0.65      24      86 ..      30      93 ..      25     103 .. 0.80
   2 ?   -0.5   0.3      0.35     1e+03      46      64 ..     149     167 ..     117     185 .. 0.58

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.00022
     DUF2721 24 riadrirqLedeleelaeeeee.deelakeiknlrrRarlirrailllvlsallvvlvvlllfl 86
                +i + ++++++e+++l++e+++ +++l++ +++++ R  l+++    l+ls+  +v++v+   +
  KOO22577.1 30 QIEKELEEVQSEHRQLEAEKDSaEKQLKELMARFKLRKALLHWRHRKLTLSFRSLVTMVFRTRV 93
                555667788888888888887756777777999*******************999999987665 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 0.35
     DUF2721  46 deelakeiknlrrRarlir 64 
                   + +++++  ++Ra+   
  KOO22577.1 149 LRDAQRQLAADQERAEAAA 167
                 3333333333333333322 PP

>> ATG16  Autophagy protein 16 (ATG16)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3  11.0    0.0002      0.61     120     177 ..       2      59 ..       1      64 [. 0.90
   2 ?    0.1   2.4      0.26   7.8e+02      88     130 ..      91     136 ..      78     146 .. 0.61
   3 ?    2.4  13.7     0.054   1.6e+02     107     169 ..     145     206 ..     112     214 .. 0.70

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.0002
       ATG16 120 edeerlaeleaeraaletklkdreeelrekeklvqdlqDElsaLqlqlnqaEeklrkl 177
                 ++e+r +++e++ ++ + k++d e+el++ ek ++++q E+ +L+ +  +aE++l++l
  KOO22577.1   2 SEETRRDSAESDLENARAKRSDPEKELAQIEKELEEVQSEHRQLEAEKDSAEKQLKEL 59 
                 577888999999999999999*******************************999998 PP

  == domain 2  score: 0.1 bits;  conditional E-value: 0.26
       ATG16  88 eelaelyksrgelaqrllelneelqk...leeklkedeerlaelea 130
                 + ++e+ + ++ ++ r+  + +e+qk   +++k+++ +++ +e+ +
  KOO22577.1  91 TRVEEAKRLKEGSERRIFMMDAEMQKavvDRQKAEAAKRKSDEMLT 136
                 4456777777888888888888877622234444444444444444 PP

  == domain 3  score: 2.4 bits;  conditional E-value: 0.054
       ATG16 107 lneelqkleeklkedeerlaeleaeraaletklkdreeelrekeklvqdlqDElsaLqlqlnq 169
                  + el++ +++l +d+er +++ +++aal+ + +     +rek+ ++  l +E+ aL  q  q
  KOO22577.1 145 GEMELRDAQRQLAADQERAEAAARRVAALQAQGAVASLGVREKDDVLR-LMEEMHALSAQTDQ 206
                 356788888888888888888888888888888888888888888775.66788888888766 PP

>> KELK  KELK-motif containing domain of MRCK Ser/Thr protein kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.3   3.3    0.0043        13      32      68 ..       9      45 ..       2      46 .. 0.88
   2 ?   11.6   4.9   9.6e-05      0.29       3      37 ..      36      70 ..      34      86 .. 0.87
   3 ?   -1.1   1.9      0.92   2.7e+03      35      52 ..      97     115 ..      85     138 .. 0.51
   4 ?    3.2   7.3      0.04   1.2e+02      21      77 ..     129     189 ..     110     192 .. 0.68

  Alignments for each domain:
  == domain 1  score: 6.3 bits;  conditional E-value: 0.0043
        KELK 32 sqkkeLkdaisqrklamqefsevneklselrsqkqkl 68
                s +++L +a ++r    +e++++++ l+e++s+ ++l
  KOO22577.1  9 SAESDLENARAKRSDPEKELAQIEKELEEVQSEHRQL 45
                56789***************************98876 PP

  == domain 2  score: 11.6 bits;  conditional E-value: 9.6e-05
        KELK  3 keLekqlrllkqEkeelqkelaeaqErlksqkkeL 37
                 e++ ++r+l+ Ek++++k+l+e++ r k +k  L
  KOO22577.1 36 EEVQSEHRQLEAEKDSAEKQLKELMARFKLRKALL 70
                67899************************988766 PP

  == domain 3  score: -1.1 bits;  conditional E-value: 0.92
        KELK  35 keLkdaisqrklamq.efs 52 
                 k Lk+  ++r  +m+ e++
  KOO22577.1  97 KRLKEGSERRIFMMDaEMQ 115
                 4444444444433321222 PP

  == domain 4  score: 3.2 bits;  conditional E-value: 0.04
        KELK  21 kelaeaqEr....lksqkkeLkdaisqrklamqefsevneklselrsqkqklsRqlrdkee 77 
                 ++  e+  +     k  + eL+da+ q    ++  + +  +++ l++q    s  +r+k++
  KOO22577.1 129 RKSDEMLTKeltlKKDGEMELRDAQRQLAADQERAEAAARRVAALQAQGAVASLGVREKDD 189
                 3444444442221356689*****98877666667777889********999999999997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (221 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2330  (0.129957); expected 358.6 (0.02)
Passed bias filter:                      598  (0.0333538); expected 358.6 (0.02)
Passed Vit filter:                       111  (0.00619109); expected 17.9 (0.001)
Passed Fwd filter:                        40  (0.00223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.77u 0.32s 00:00:01.09 Elapsed: 00:00:00.50
# Mc/sec: 1341.23
//
Query:       KOO22578.1  [L=136]
Description: thioredoxin [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    3.8e-11   42.9   0.0    4.6e-11   42.6   0.0    1.2  1  Thioredoxin  Thioredoxin
  ------ inclusion threshold ------
      0.018   14.0   0.0      0.021   13.8   0.0    1.1  1  Phosducin    Phosducin
      0.088   12.6   0.2       0.19   11.5   0.2    1.5  1  DUF2997      Protein of unknown function (DUF2997)


Domain annotation for each model (and alignments):
>> Thioredoxin  Thioredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.6   0.0   7.7e-15   4.6e-11      17     100 ..      31     113 ..      12     116 .. 0.88

  Alignments for each domain:
  == domain 1  score: 42.6 bits;  conditional E-value: 7.7e-15
                  TSSEEEEEEE-TTSHHHHCHHHHHHHHHHHCTT.TSEEEEEETTTSHHHHHHTT-SSSSEEEEEETTEEEEEEESS-HHHHHHHH CS
  Thioredoxin  17 ekklvlveFyApwCghCkalaPeleklaeelkd.kvklakvdvdenedlakkyevegiPtlklfkngkevkkyegarekeklaaf 100
                  ++ l++ve + +wCg+  a+++++++la elk+ kvk++k+d++  +   k+ + ++ P + ++k+g+ ++++eg ++   l++f
   KOO22578.1  31 KDMLHVVEIFCTWCGPSDAVKSTYKRLAVELKGrKVKFYKMDAKLVPGFEKQ-ALTSKPFFAIYKDGEIIEQVEGINT-PLLEKF 113
                  46778***************************************99888777.99********************988.556555 PP

>> Phosducin  Phosducin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.0   3.5e-06     0.021     144     227 ..      30     115 ..      10     125 .. 0.85

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 3.5e-06
                 -TT-EEEEEEE-TTSTTHHHHHHHHHHHHHH-T..TSEEEEEEHHHH--TTSS-TTT-SEEEEEETTEEEEEETTGGGGS-TT--H CS
   Phosducin 144 qkitlivvhiyedgvkgtealnssliclaaeyp..tvkfckvkasvigasdrfsrdvlpallvykagellsnfvrvtdqlaedffa 227
                 +k  l vv i+      ++a+ s+   la e     vkf k+ a  +   ++ +    p + +yk ge++ +   +   l e+f+ 
  KOO22578.1  30 EKDMLHVVEIFCTWCGPSDAVKSTYKRLAVELKgrKVKFYKMDAKLVPGFEKQALTSKPFFAIYKDGEIIEQVEGINTPLLEKFIG 115
                 566788999999999999************985338***********9999999999*************9998888888888864 PP

>> DUF2997  Protein of unknown function (DUF2997)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.2   3.2e-05      0.19       3      18 ..      90     105 ..      90     106 .. 0.92

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 3.2e-05
     DUF2997   3 irIspDGrVeeeveGi 18 
                 + I++DG++ e+veGi
  KOO22578.1  90 FAIYKDGEIIEQVEGI 105
                 67*************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (136 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       364  (0.0203023); expected 358.6 (0.02)
Passed bias filter:                      325  (0.0181271); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.37u 0.26s 00:00:00.63 Elapsed: 00:00:00.41
# Mc/sec: 984.57
//
Query:       KOO22579.1  [L=191]
Description: hypothetical protein Ctob_000050 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
  ------ inclusion threshold ------
        4.9    6.8   7.7        6.6    6.4   7.7    1.3  1  Cwf_Cwc_15   Cwf15/Cwc15 cell cycle control protein


Domain annotation for each model (and alignments):
>> Cwf_Cwc_15  Cwf15/Cwc15 cell cycle control protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.4   7.7   0.00037       6.6     109     147 ..     142     181 ..      77     184 .. 0.69

  Alignments for each domain:
  == domain 1  score: 6.4 bits;  conditional E-value: 0.00037
                 .-----------------.--------------------- CS
  Cwf_Cwc_15 109 reidaddedseeeeeeee.eesdddsdsdsdddddedeta 147
                 +e+dad  ++ ee ++ e ++s d+ d  +++d+d+de++
  KOO22579.1 142 EELDADAVRELEEADDAEgSDSGDEVDYPDEEDSDDDEEE 181
                 4889998877665555553444455555555555555554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (191 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       532  (0.0296726); expected 358.6 (0.02)
Passed bias filter:                      305  (0.0170115); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.22s 00:00:00.63 Elapsed: 00:00:00.38
# Mc/sec: 1514.22
//
Query:       KOO22580.1  [L=566]
Description: beta-ig-h3 fasciclin [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.5e-35  121.5   0.0    5.6e-35  120.4   0.0    1.6  1  Fasciclin  Fasciclin domain


Domain annotation for each model (and alignments):
>> Fasciclin  Fasciclin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  120.4   0.0   3.1e-39   5.6e-35       2     128 .]     245     369 ..     244     369 .. 0.96

  Alignments for each domain:
  == domain 1  score: 120.4 bits;  conditional E-value: 3.1e-39
                 GGHHHHHHHHTTTCCCCCTCSSSSEEEEEE-HHHHCCCHHHHHHHHHT..CHHHHHHHHHTTEEESSS-HHHHHHH.HEEEECCTTSSEEEEEEEGGTT CS
   Fasciclin   2 dlstfvsllekaglaeeLnkkdgglTvFaPtneAfaklppellaklln..dkkklkeiLkyHvvpetvsssalkka.setlatllegaklrvniekgng 97 
                  ++t++++l +agl++++ k+ g++TvFaPt++Afaklp+++ ++ll+  +k+kl++iL+yHvvp++v++s ++++   +++t ++ga++++++   ++
  KOO22580.1 245 AFKTLAAALGAAGLVDTM-KSVGPFTVFAPTDAAFAKLPAGTIEDLLKpeNKAKLAAILTYHVVPGKVMASTVVTMdGAKVPT-VNGAEVTIKVG--KD 339
                 599***************.888**********************************************999999996678***.***********..99 PP

                 EEEETTEEEEEEEEEEESSEEEEEESS-TSX CS
   Fasciclin  98 tvtvngkarvvrsdieatngvihvidkvLlp 128
                  v+v+g a+v+++die+tngvih+id+v+lp
  KOO22580.1 340 GVMVDG-AKVTTTDIECTNGVIHIIDSVILP 369
                 9*****.**********************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (566 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1470  (0.0819901); expected 358.6 (0.02)
Passed bias filter:                      426  (0.0237604); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.61u 0.28s 00:00:00.89 Elapsed: 00:00:00.43
# Mc/sec: 3926.67
//
Query:       KOO22581.1  [L=247]
Description: hypothetical protein Ctob_000082 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
     0.0087   15.7   0.3      0.016   14.8   0.3    1.5  1  Cytadhesin_P30   Cytadhesin P30/P32
  ------ inclusion threshold ------
      0.043   13.4  10.7       0.07   12.7  10.7    1.3  1  DDRGK            DDRGK domain
      0.074   12.8   1.2        0.1   12.4   1.1    1.3  1  SAGA-Tad1        Transcriptional regulator of RNA polII, SAGA
        0.2   11.7   1.5       0.24   11.4   1.5    1.2  1  DUF4778          Domain of unknown function (DUF4778)
        1.3    9.2   7.8         18    5.5   5.1    3.1  2  F420H2_quin_red  F420H(2)-dependent quinone reductase
          3    7.1  11.1        4.2    6.6  11.1    1.2  1  DUF4407          Domain of unknown function (DUF4407)


Domain annotation for each model (and alignments):
>> Cytadhesin_P30  Cytadhesin P30/P32
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.3   5.2e-06     0.016      58     131 ..      20      90 ..      11     140 .. 0.80

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 5.2e-06
  Cytadhesin_P30  58 eeawfipvvaagaGlivlalllGlaiGlpivkkkekrlleekeeqeklveslqiieeqektealeaaeevnaee 131
                     +++ f p  a+++G     +++ l+ G   v+ kekr  ee+e+ +k+ve  +  e+  +  a ea + ++ +e
      KOO22581.1  20 QQPRFTPLKATTVGHQRRVIVMQLG-GNRWVQAKEKREEEERERYQKIVEAREAAER-ARLAAAEAEQ-ARKRE 90 
                     7999************999999999.88999*******************9876654.3344444322.22222 PP

>> DDRGK  DDRGK domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7  10.7   2.3e-05      0.07      27      82 ..      51     106 ..      45     129 .. 0.60

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 2.3e-05
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
       DDRGK  27 ereerkkleekreeerkekeekeeekekkkeeeerkkeeekerkeqeeyeklksef 82 
                  +e+r+ +e +r ++  e++e+ e+++ +++e+e+ +++e+++++ +ey++ +++f
  KOO22581.1  51 AKEKREEEERERYQKIVEAREAAERARLAAAEAEQARKREEAERKAAEYQEYQDSF 106
                 34444445555555555555555555555555555555555555556666655555 PP

>> SAGA-Tad1  Transcriptional regulator of RNA polII, SAGA, subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   1.1   3.3e-05       0.1      63     141 ..      10     104 ..       9     175 .. 0.63

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 3.3e-05
   SAGA-Tad1  63 LllsIlkNalrespd.claktppsatakkkks..........slkkspkksrsgdsqeerlkkrvmslpprdrkrlkaitkeagvlaee.......... 140
                 L+  +l+Nal++     l+   +++ +    +          ++  +  k++ +++++er++k+v + ++ +r rl a++ e++  ++e          
  KOO22581.1  10 LIHVVLANALQQPRFtPLKA--TTVGH----QrrvivmqlggNRWVQA-KEKREEEERERYQKIVEAREAAERARLAAAEAEQAR-KREeaerkaaeyq 100
                 78899999954443322221..12222....23466888886333344.44455556679*******************998773.2332233333333 PP

   SAGA-Tad1 141 ...s 141
                     
  KOO22581.1 101 eyqD 104
                 4440 PP

>> DUF4778  Domain of unknown function (DUF4778)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   1.5   8.1e-05      0.24     107     219 ..      38     147 ..       9     222 .. 0.62

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 8.1e-05
     DUF4778 107 aahkklfgneslrkreraskkrekgqrkierrlklakragigsesaarqngkRrrkelkekedeekselneiaelldgqdaaervkkeleakslpnseg 205
                 +   +l gn  ++++e++++ +++  +ki ++++ a+ra +    a   +  R+r+e+++k+ e ++ ++  ++   g   + ++ ++++  + +  ++
  KOO22581.1  38 VIVMQLGGNRWVQAKEKREEEERERYQKIVEAREAAERARLAAAEA---EQARKREEAERKAAEYQEYQDSFDYFQPGGAGQGKMGQPFQGVTREMLQN 133
                 5567888999999999999888888888***********9987766...44555566666655665555445555444444444555554444444444 PP

     DUF4778 206 lgesraslelskrs 219
                 +g++  +  + +++
  KOO22581.1 134 AGKATSPALVADEQ 147
                 44444444333333 PP

>> F420H2_quin_red  F420H(2)-dependent quinone reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.5   5.1    0.0059        18      81     118 ..      67     105 ..       4     109 .. 0.67
   2 ?    2.1   0.0     0.065   1.9e+02      13      38 ..     116     141 ..     113     156 .. 0.89

  Alignments for each domain:
  == domain 1  score: 5.5 bits;  conditional E-value: 0.0059
                      ETTEEEEEEEEE--.HHHHHHHHHHHHHH-THHHHHHHH CS
  F420H2_quin_red  81 vgakkldvtAreve.ddekarlwklvvenspsYadyqsk 118
                      v+a++ +  Ar +  ++e+ar ++ + +++++Y++yq  
       KOO22581.1  67 VEAREAAERARLAAaEAEQARKREEAERKAAEYQEYQDS 105
                      77888899999999899********************76 PP

  == domain 2  score: 2.1 bits;  conditional E-value: 0.065
                      XXXXTTXTTS---EEEEEE-TTT-SE CS
  F420H2_quin_red  13 egkvgrrlegvpvllLtttGrktgkp 38 
                      +gk+g+ ++gv   +L+  G+ t+ +
       KOO22581.1 116 QGKMGQPFQGVTREMLQNAGKATSPA 141
                      689*****************999865 PP

>> DUF4407  Domain of unknown function (DUF4407)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6  11.1    0.0014       4.2     115     219 ..      51     190 ..      46     221 .. 0.59

  Alignments for each domain:
  == domain 1  score: 6.6 bits;  conditional E-value: 0.0014
     DUF4407 115 eqqeeakelkeqlaaaltaelaeleaqiaalqaeidaaearldalraeaqkeldgtk........gtgttgvaGkgpaake..............kkaq 191
                  ++++++e +e++++  +a+ a+++a++aa++ae + ++++++++ ae+q e++  +        g+g  g + +  +++e              +++q
  KOO22581.1  51 AKEKREEEERERYQKIVEAREAAERARLAAAEAEQARKREEAERKAAEYQ-EYQDSFdyfqpggaGQGKMGQPFQ-GVTREmlqnagkatspalvADEQ 147
                 45555666666777778899999999999999999999999988888888.666666788676554443333222.23333455666655566665555 PP

     DUF4407 192 ldaaqaelaelkakld...............atarlaalrael 219
                 l++a a+  +++++ +                ++++++ ++  
  KOO22581.1 148 LKQAVADAGKYSTDASrvmlerviaearaagVREKMPNMKKAV 190
                 5555555555554444666667765554444333333333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (247 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1929  (0.107591); expected 358.6 (0.02)
Passed bias filter:                      799  (0.0445647); expected 358.6 (0.02)
Passed Vit filter:                       113  (0.00630264); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.53u 0.27s 00:00:00.80 Elapsed: 00:00:00.42
# Mc/sec: 1763.06
//
Query:       KOO22582.1  [L=585]
Description: intraflagellar transport protein 74-like protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
  ------ inclusion threshold ------
       0.14   11.9   0.0       0.36   10.5   0.0    1.7  1  Hema_stalk    Influenza C hemagglutinin stalk
       0.45   11.0  25.0        4.4    7.8   0.7    6.0  5  NPV_P10       Nucleopolyhedrovirus P10 protein


Domain annotation for each model (and alignments):
>> Hema_stalk  Influenza C hemagglutinin stalk
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.0     4e-05      0.36      55     109 ..     511     570 ..     486     580 .. 0.75

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 4e-05
  Hema_stalk  55 lrsstniaieklndrishdeqairdltleienarseallg...e..lgiirallvgnisi 109
                  +     a+++l+ +i h+eq+i  lt  ie   sea++    e  l ii+ +    is+
  KOO22582.1 511 AKDDVATALDELEAKIRHQEQTIWVLTEYIETKGSEAFFEpvaEecLNIIQGINAETISV 570
                 456677899****************************87411112356666666666665 PP

>> NPV_P10  Nucleopolyhedrovirus P10 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.4   0.0   0.00069       6.2       6      62 ..      73     129 ..      70     146 .. 0.90
   2 ?    7.8   0.7   0.00049       4.4      10      71 ..     159     221 ..     156     225 .. 0.79
   3 ?   -0.7   2.1      0.23   2.1e+03      12      28 ..     309     325 ..     254     403 .. 0.67
   4 ?    3.5   0.5     0.011        97      22      53 ..     418     449 ..     400     460 .. 0.72
   5 ?    5.6   0.5    0.0024        22      17      59 ..     486     527 ..     478     537 .. 0.86

  Alignments for each domain:
  == domain 1  score: 7.4 bits;  conditional E-value: 0.00069
     NPV_P10   6 LlvIradikavddkVdalqqqvddvqenlpdvtelnekLdaqsaqLaeletkvenIq 62 
                 L + ra  ++++  ++ l+  +++ q++     +l+ k +a+++ + +l+ ++ + +
  KOO22582.1  73 LSQLRAKCTEIQREIQTLKGTIEQGQKDNAAYGQLERKYEALTNDMRALQGQLADYN 129
                 77899999*****************************************99887655 PP

  == domain 2  score: 7.8 bits;  conditional E-value: 0.00049
     NPV_P10  10 radikavddkVdalqqqvddvqenlpd.vtelnekLdaqsaqLaeletkvenIqdiLnpdevP 71 
                 r+ + ++ +  ++l++q  dv+++l    +el +kL+a+  +L+e   k+++ q +L+ +e+P
  KOO22582.1 159 RQRVDELFQHRNSLETQARDVEHQLMRhQEELAAKLEAIDPSLKENFLKLSQKQHVLSLQELP 221
                 556667777778899999999988754156899999999999999888999999999977777 PP

  == domain 3  score: -0.7 bits;  conditional E-value: 0.23
     NPV_P10  12 dikavddkVdalqqqvd 28 
                 +i+a ++++  lq+ ++
  KOO22582.1 309 AIRAGKKRLAQLQSDMT 325
                 33333444444444432 PP

  == domain 4  score: 3.5 bits;  conditional E-value: 0.011
     NPV_P10  22 alqqqvddvqenlpdvtelnekLdaqsaqLae 53 
                  lq ++++ +++l++++ l ek+ a   qL+e
  KOO22582.1 418 RLQRELAQRKTELEKIETLDEKIGAEIVQLEE 449
                 58888899999999999999998876655543 PP

  == domain 5  score: 5.6 bits;  conditional E-value: 0.0024
     NPV_P10  17 ddkVdalqqqvddvqenlpdvtelnekL..daqsaqLaeletkve 59 
                 + k+ al+++ ++ ++n+ d   l++kL  d+ +++L+ele+k+ 
  KOO22582.1 486 EGKIGALKARAAQAKKNHDD---LKDKLakDDVATALDELEAKIR 527
                 679999999999****9999...88999778999*******9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (585 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2518  (0.140443); expected 358.6 (0.02)
Passed bias filter:                      517  (0.028836); expected 358.6 (0.02)
Passed Vit filter:                       110  (0.00613531); expected 17.9 (0.001)
Passed Fwd filter:                        62  (0.00345808); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 1.66u 0.41s 00:00:02.06 Elapsed: 00:00:00.62
# Mc/sec: 2863.73
//
Query:       KOO22583.1  [L=795]
Description: hypothetical protein Ctob_000080 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.5e-05   24.4   0.0    2.4e-05   23.7   0.0    1.2  1  ART             NAD:arginine ADP-ribosyltransferase
     0.0028   17.0   0.0     0.0096   15.3   0.0    1.7  1  ADPrib_exo_Tox  ADP-ribosyltransferase exoenzyme
  ------ inclusion threshold ------
       0.12   12.4   0.9         14    5.8   0.4    2.7  2  CrgA            Cell division protein CrgA


Domain annotation for each model (and alignments):
>> ART  NAD:arginine ADP-ribosyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.7   0.0     4e-09   2.4e-05      59     202 ..     625     774 ..     614     784 .. 0.77

  Alignments for each domain:
  == domain 1  score: 23.7 bits;  conditional E-value: 4e-09
         ART  59 egfkdehgiAllaYtssselyrelneavreaGrsreeylsnfdfkalhfyLtraLqlLrk.dsqrcsq.....vyRgvk....glrfsrakkgksvRfg 147
                 +++++ h +Al +Yt+    +r+ln  +r     r+e +  ++f   + y+ +++ +Lr+   q+ ++     ++Rg k    g +f+r +  +     
  KOO22583.1 625 ARLQEPHVLALRLYTTA--AFRSLNVPLRD---TRAERP-PHPFPITVNYIREGISQLRAaA-QQHYSddtldLWRGLKnlkaGAEFQRHGGTEL--AP 714
                 688999**********9..9*********6...555555.45888899************53.4333347999******8888888886555533..33 PP

         ART 148 qFtssslkkkvae.efgqdtllsiktcl....gvpIkefskfpsedevLIppfevFkvtn 202
                   t + l+  va   +    ll+++t +    g+++  +s fp+e e+L pp++  + t+
  KOO22583.1 715 MSTTTDLSIAVAYsISSRSLLLKLRTNSfmgrGADLTYLSAFPGESEILFPPLTYLRPTG 774
                 3444555555555346677899****7556669********************9877665 PP

>> ADPrib_exo_Tox  ADP-ribosyltransferase exoenzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.0   1.6e-06    0.0096      21     163 ..     632     766 ..     621     792 .. 0.80

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 1.6e-06
                     HHHHHHHCCTTHHHHHHHHHCTTTSGGGS-...S.CHHHHHHHHHHHHCCT-B-SS-EEEEEEE-GGGG-HHHHTT-HHHHHHHHHHHTT-EEEE CS
  ADPrib_exo_Tox  21 keaireYtgsgysdINnyLrqnkgerndld...k.selekkiknldsaleksripeniivYRrvdeaelgleldskneekvsefeakvkgkvfke 111
                     + a+r Yt+    ++N +Lr+ + er + +   + + +++ i +l +a ++    +++ ++R+               +++ +  a ++    +e
      KOO22583.1 632 VLALRLYTTAAFRSLNVPLRDTRAERPPHPfpiTvNYIREGISQLRAAAQQHYSDDTLDLWRGL--------------KNL-KAGAEFQRHGGTE 711
                     568999*************9988888654322255888999***********99********97..............222.3345677888999 PP

                     SS-EEEESSSS...SCCCTTTSEEEEEEE-.TTSBEEE-CCCSSSGCG-EEEE-T CS
  ADPrib_exo_Tox 112 rgyvSTslvkd..taasfggreilleltvp.kgsegayisplslypgeaEvLlpr 163
                      + +ST+      +a s++ r+ ll+l++  +   ga++  ls++pge E+L+p 
      KOO22583.1 712 LAPMSTTTDLSiaVAYSISSRSLLLKLRTNsFMGRGADLTYLSAFPGESEILFPP 766
                     99999987666569999**********99725779******************95 PP

>> CrgA  Cell division protein CrgA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.9   0.0    0.0095        57      28      55 ..      64      91 ..      45     100 .. 0.80
   2 ?    5.8   0.4    0.0023        14      42      85 ..     364     415 ..     341     416 .. 0.66

  Alignments for each domain:
  == domain 1  score: 3.9 bits;  conditional E-value: 0.0095
        CrgA 28 kpsprwyvpvmlglmllGllwlvvyYla 55
                 + p+++  v l    lGl+wl+v+  +
  KOO22583.1 64 PKAPTIVELVHLMPASLGLIWLMVWTTS 91
                5678888899999999********8655 PP

  == domain 2  score: 5.8 bits;  conditional E-value: 0.0023
        CrgA  42 mllGllwlvvyYlage.........eipfmaelgawNlliGfgliivGllmtt 85 
                 + l l+ l v  +a++         ++p + ++ a+N+l G+  +++ l m++
  KOO22583.1 364 LWLNLAILAVASMAKAglaagrrsrRFP-LLNWAAFNMLYGLVGLLAPLYMSM 415
                 3333444444444444444446655666.899*******************99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (795 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       460  (0.0256568); expected 358.6 (0.02)
Passed bias filter:                      289  (0.0161191); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.60u 0.28s 00:00:00.88 Elapsed: 00:00:00.43
# Mc/sec: 5545.00
//
Query:       KOO22584.1  [L=189]
Description: nucleoside diphosphate kinase b [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.6e-53  179.7   0.0    3.2e-53  179.4   0.0    1.1  1  NDK       Nucleoside diphosphate kinase


Domain annotation for each model (and alignments):
>> NDK  Nucleoside diphosphate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  179.4   0.0   1.8e-57   3.2e-53       1     135 []      42     176 ..      42     176 .. 0.99

  Alignments for each domain:
  == domain 1  score: 179.4 bits;  conditional E-value: 1.8e-57
                 EEEEEEE-HHHHHTT-HHHHHHHHHHHT-EEEEEEEECE-HHHHHHHTGGGTTSTTHHHHHHHHTSSEEEEEEEESTTHHHHHHHHH--SSTTTSSTTS CS
         NDK   1 ertlvliKPdavkrgligeiisrleekglkivalkmlrlteeqaeehYaehkgkpffeelvefmtsgpvvalvlegedaiekvreliGatnpaeaapgt 99 
                 ert+++iKPd+v+rgl+geii+r+e++g+k+ alk+ +++e+++++hY + ++kpff+ l+++mtsgpv+++v+ege++++  r+++G+tnp+ +apgt
  KOO22584.1  42 ERTYIMIKPDGVQRGLVGEIIKRFEQRGYKLGALKLYQANEDLLRKHYGDLQEKPFFPGLLKYMTSGPVTCMVWEGENVVRMGRQMLGETNPQASAPGT 140
                 89************************************************************************************************* PP

                 HHHHH-SSSTT-SEEE-SSHHHHHHHHHHHSTGGGS CS
         NDK 100 iRadfgvslgeNlvHgSdseesaereiklfFkeeei 135
                 iR+df++ +g+N++HgSds +sae+eikl+F+++e+
  KOO22584.1 141 IRGDFSIVVGRNICHGSDSVASAEKEIKLWFDDNEV 176
                 ********************************9985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (189 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       333  (0.0185733); expected 358.6 (0.02)
Passed bias filter:                      317  (0.0176809); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.23s 00:00:00.62 Elapsed: 00:00:00.38
# Mc/sec: 1495.72
//
Query:       KOO22585.1  [L=681]
Description: hypothetical protein Ctob_000084 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.059   12.7   0.2        2.1    7.6   0.0    2.1  2  Pkinase   Protein kinase domain


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.6   0.0   0.00012       2.1      67     121 ..     139     192 ..      88     203 .. 0.87
   2 ?    3.0   0.0     0.003        53     234     264 .]     483     513 ..     446     513 .. 0.85

  Alignments for each domain:
  == domain 1  score: 7.6 bits;  conditional E-value: 0.00012
                 EEESSEEEEEEE--TTEBHHHHHHHHSS--HHHHHHHHHHHHHHHHHHHHTTEE- CS
     Pkinase  67 feekdelylvleyveggeladllerkgslseeeakkiakqilegleylHskgiiH 121
                  +++ +++lv+   +++ l+ +l+  + l+e++a  i+ q++++++ +H+++++H
  KOO22585.1 139 ATDPPSVHLVQPATHTT-LDLVLKLPRPLEEAHAHAIFCQLAHAVQAVHAQRFFH 192
                 56677888888888755.9999998889**************************9 PP

  == domain 2  score: 3.0 bits;  conditional E-value: 0.003
                 -HHHHHHHHHHT-SSGCCSTTHHHHHTSGGG CS
     Pkinase 234 seeakdllkkllkkdpkkRltaeellqhpyl 264
                    + +ll ++l+ d  +R+  +++l+++++
  KOO22585.1 483 ATAVPQLLLRMLHPDSARRPMLRDVLRSEWV 513
                 566779**********************996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (681 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       610  (0.0340231); expected 358.6 (0.02)
Passed bias filter:                      397  (0.0221429); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.57u 0.27s 00:00:00.84 Elapsed: 00:00:00.43
# Mc/sec: 4734.99
//
Query:       KOO22586.1  [L=107]
Description: DNA-directed RNA polymerases iii kda polypeptide [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.8e-22   78.9   5.0    1.8e-22   78.9   5.0    2.4  3  TFIIS_C          Transcription factor S-II (TFIIS)
    7.5e-07   28.9   1.4    7.5e-07   28.9   1.4    3.0  3  RNA_POL_M_15KD   RNA polymerases M/15 Kd subunit
    6.8e-06   26.0   7.8    0.00081   19.3   1.9    2.3  2  Zn_Tnp_IS1595    Transposase zinc-ribbon domain
    0.00012   21.9   5.9    0.00083   19.2   0.4    2.5  2  C1_1             Phorbol esters/diacylglycerol binding domain
     0.0015   18.4   7.4      0.014   15.3   0.7    3.2  3  Nudix_N_2        Nudix N-terminal
     0.0047   17.0   1.4     0.0065   16.6   1.4    1.3  1  zf-RRPl_C4       Putative ribonucleoprotein zinc-finger pf C4
  ------ inclusion threshold ------
      0.018   14.7   5.7      0.055   13.1   0.1    2.1  2  DpnI             Dam-replacing family
      0.032   14.3   9.5        1.4    9.0   3.8    2.5  2  DZR              Double zinc ribbon
      0.036   14.2   6.7        1.9    8.7   0.8    3.4  3  Zn-ribbon_8      Zinc ribbon domain
      0.072   13.0   6.1       0.81    9.6   2.5    2.9  2  PHD              PHD-finger
      0.074   13.6   4.4        1.1    9.9   0.1    3.0  3  Zn_ribbon_recom  Recombinase zinc beta ribbon domain
      0.085   12.8   1.0      0.085   12.8   1.0    2.3  3  DUF3797          Domain of unknown function (DUF3797)
       0.16   11.9   2.0       0.18   11.6   0.5    1.7  2  zf-ZPR1          ZPR1 zinc-finger domain
       0.18   11.7   8.6       0.86    9.6   0.4    3.2  3  zinc_ribbon_4    zinc-ribbon domain
       0.49   10.1   5.6        3.2    7.4   0.1    2.7  2  Desulfoferrod_N  Desulfoferrodoxin, N-terminal domain
          2    9.0   7.6         38    4.9   0.2    3.3  3  zf-H2C2_2        Zinc-finger double domain
        3.1    7.9   6.4        5.6    7.0   3.8    2.5  2  CpXC             CpXC protein
        4.4    7.7   9.0          2    8.8   1.4    2.9  3  DUF4379          Probable Zinc-ribbon domain
        5.2    6.7  10.6       0.13   11.8   1.3    2.7  2  TF_Zn_Ribbon     TFIIB zinc-binding
        5.3    7.2   9.3         15    5.8   0.3    2.8  2  zf-Mss51         Zinc-finger of mitochondrial splicing suppre
        5.8    7.2   9.4         32    4.8   0.3    3.3  3  zf-C3HC4_4       zinc finger of C3HC4-type, RING
        5.9    7.3  14.1        0.7   10.3   1.4    2.9  2  C1_2             C1 domain
        6.3    7.0   7.3         29    4.9   2.7    3.1  2  zinc_ribbon_13   Nucleic-acid-binding protein containing Zn-r
        7.6    6.5  14.7        8.2    6.4   0.3    3.9  4  zf-HIT           HIT zinc finger
          9    6.3   9.4         32    4.6   4.0    2.7  2  OrfB_Zn_ribbon   Putative transposase DNA-binding domain


Domain annotation for each model (and alignments):
>> TFIIS_C  Transcription factor S-II (TFIIS)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.1       3.6   2.6e+03       3       8 ..       4       9 ..       2      12 .. 0.61
   2 ?    0.0   0.2       1.1   7.8e+02      29      37 ..      23      31 ..      17      33 .. 0.70
   3 !   78.9   5.0   2.5e-25   1.8e-22       2      39 .]      68     105 ..      67     105 .. 0.98

  Alignments for each domain:
  == domain 1  score: -1.6 bits;  conditional E-value: 3.6
     TFIIS_C 3 CpkCgs 8
               C  Cg+
  KOO22586.1 4 CFICGN 9
               555655 PP

  == domain 2  score: 0.0 bits;  conditional E-value: 1.1
     TFIIS_C 29 ykCtkCghr 37
                + C +C + 
  KOO22586.1 23 FYCQTCPYV 31
                668888665 PP

  == domain 3  score: 78.9 bits;  conditional E-value: 2.5e-25
     TFIIS_C   2 kCpkCgsreayffqlQtRsaDEpmtvfykCtkCghrWr 39 
                  CpkC +r+ay+ qlQ+RsaDEpmt+fykCt+CghrWr
  KOO22586.1  68 NCPKCTNRRAYYQQLQIRSADEPMTTFYKCTECGHRWR 105
                 7************************************8 PP

>> RNA_POL_M_15KD  RNA polymerases M/15 Kd subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.9   1.4     1e-09   7.5e-07       1      31 [.       1      32 [.       1      35 [. 0.96
   2 ?    0.2   2.1         1   7.2e+02       4       9 ..      69      74 ..      68      75 .. 0.92
   3 ?    1.8   0.0      0.32   2.3e+02      21      28 ..      93     101 ..      81     103 .. 0.67

  Alignments for each domain:
  == domain 1  score: 28.9 bits;  conditional E-value: 1e-09
                    EEBESTTTSBEEEEECSCCCE.EEESSSS-EE CS
  RNA_POL_M_15KD  1 lkFCpkCgNlLlpkedkegkn.feCrqCgYee 31
                    + FC  CgN+L   +   g+  f C +C+Y++
      KOO22586.1  1 MHFCFICGNMLMLETSTGGRLrFYCQTCPYVY 32
                    89*****************99*********98 PP

  == domain 2  score: 0.2 bits;  conditional E-value: 1
                    ESTTTS CS
  RNA_POL_M_15KD  4 CpkCgN 9 
                    CpkC N
      KOO22586.1 69 CPKCTN 74
                    ****88 PP

  == domain 3  score: 1.8 bits;  conditional E-value: 0.32
                     E.EEESSSS CS
  RNA_POL_M_15KD  21 n.feCrqCg 28 
                       + C  Cg
      KOO22586.1  93 TfYKCTECG 101
                     258888886 PP

>> Zn_Tnp_IS1595  Transposase zinc-ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.1   0.4   0.00085      0.61      21      44 ..       4      29 ..       1      31 [. 0.85
   2 !   19.3   1.9   1.1e-06   0.00081      15      45 ..      59     102 ..      57     103 .. 0.80

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.00085
  Zn_Tnp_IS1595 21 CPhCgsrkayrikt..rglfqCkeCr 44
                   C  Cg++   +++t  r +f C+ C 
     KOO22586.1  4 CFICGNMLMLETSTggRLRFYCQTCP 29
                   *******777777779*********6 PP

  == domain 2  score: 19.3 bits;  conditional E-value: 1.1e-06
  Zn_Tnp_IS1595  15 Wpng....fvCPhCgsrkayrikt.........rglfqCkeCrk 45 
                    W+n       CP+C +r+ay  +             ++C eC++
     KOO22586.1  59 WKNAdqsdANCPKCTNRRAYYQQLqirsadepmTTFYKCTECGH 102
                    8888888889*******55533333677**************98 PP

>> C1_1  Phorbol esters/diacylglycerol binding domain (C1 domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.2   0.4   1.2e-06   0.00083      12      41 ..       2      35 ..       1      42 [. 0.89
   2 ?    4.9   0.7     0.035        25       3      35 ..      59     101 ..      58     104 .. 0.72

  Alignments for each domain:
  == domain 1  score: 19.2 bits;  conditional E-value: 1.2e-06
                -B-TTT-SB-....-SSSS-EEEETTT--EE-CC CS
        C1_1 12 tfCkhCgefl....wgkekqglkCswCkllvHkk 41
                +fC  Cg++l    +++++  + C++C +++H k
  KOO22586.1  2 HFCFICGNMLmletSTGGRLRFYCQTCPYVYHLK 35
                79********99966699999***********87 PP

  == domain 2  score: 4.9 bits;  conditional E-value: 0.035
                 EEEE--SS--B-TTT-SB-...........-SSSS-EEEETTT- CS
        C1_1   3 wvhrnfkqptfCkhCgefl...........wgkekqglkCswCk 35 
                 w+    ++ + C +C +              +  ++ +kC++C+
  KOO22586.1  59 WKNAD-QSDANCPKCTNRRayyqqlqirsaDEPMTTFYKCTECG 101
                 55555.67778888887777777777777444788999999997 PP

>> Nudix_N_2  Nudix N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.7   1.9e-05     0.014       2      31 ..       3      31 ..       2      33 .. 0.90
   2 ?    1.6   0.1      0.38   2.7e+02       3       9 ..      69      75 ..      68      90 .. 0.78
   3 ?    4.3   0.1     0.055        39       3       9 ..      97     103 ..      95     106 .. 0.79

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 1.9e-05
                B-TTT--B-EEE--TT-SS-EEEETTTTEE CS
   Nudix_N_2  2 FCsqCGtpvelripdgDnreRlvCpaCgti 31
                FC  CG+ + l++   + r R+ C+ C ++
  KOO22586.1  3 FCFICGNMLMLETS-TGGRLRFYCQTCPYV 31
                9************7.5579********988 PP

  == domain 2  score: 1.6 bits;  conditional E-value: 0.38
                -TTT--B CS
   Nudix_N_2  3 CsqCGtp 9 
                C++C ++
  KOO22586.1 69 CPKCTNR 75
                8888776 PP

  == domain 3  score: 4.3 bits;  conditional E-value: 0.055
                 -TTT--B CS
   Nudix_N_2   3 CsqCGtp 9  
                 C++CG++
  KOO22586.1  97 CTECGHR 103
                 8888886 PP

>> zf-RRPl_C4  Putative ribonucleoprotein zinc-finger pf C4 type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   1.4     9e-06    0.0065      18      89 ..      22     103 ..       1     106 [. 0.76

  Alignments for each domain:
  == domain 1  score: 16.6 bits;  conditional E-value: 9e-06
  zf-RRPl_C4  18 tvyCeaCeiyfkvknekqkvelvpike..........lekislrdkLCtkCkeknekekeircetfeeylkklklCkeCker 89 
                  +yC++C   ++ k   + +  ++ k            +    +d  C kC+++    ++++ ++ +e ++    C+eC +r
  KOO22586.1  22 RFYCQTCPYVYHLKAMVRVDVPLEHKAvdevlggpeaWKNADQSDANCPKCTNRRAYYQQLQIRSADEPMTTFYKCTECGHR 103
                 68******9999877665555554443678999*99989999999*********999999999999*************876 PP

>> DpnI  Dam-replacing family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.1   7.7e-05     0.055      33      69 ..       3      38 ..       1      55 [. 0.79
   2 ?    3.5   2.1     0.068        49      30      62 ..      65     103 ..      56     106 .. 0.70

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 7.7e-05
                --TTT--SS-EE--------EEE-TTT--EEEEEEEE CS
        DpnI 33 yCpkCgskklsefennkpvaDfyCesckeefeLkskk 69
                +C +Cg+  + e +   +   fyC++c   ++Lk+  
  KOO22586.1  3 FCFICGNMLMLETSTGGR-LRFYCQTCPYVYHLKAMV 38
                9*******8777776666.57*************975 PP

  == domain 2  score: 3.5 bits;  conditional E-value: 0.068
                 HH---TTT--.....SS-EE--------EEE.-TTT--E CS
        DpnI  30 knlyCpkCgs.....kklsefennkpvaDfy.Cesckee 62 
                 ++  CpkC +     ++l+  ++++p++ fy C++c  +
  KOO22586.1  65 SDANCPKCTNrrayyQQLQIRSADEPMTTFYkCTECGHR 103
                 5679****9833333357777889999999889999766 PP

>> DZR  Double zinc ribbon
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.3   0.3    0.0031       2.2      13      40 ..       2      34 ..       1      38 [. 0.77
   2 ?    9.0   3.8    0.0019       1.4       5      37 ..      59     103 ..      56     107 .] 0.84

  Alignments for each domain:
  == domain 1  score: 8.3 bits;  conditional E-value: 0.0031
         DZR 13 rfCseCgtklkavaa.....edrCpsCgekvdp 40
                +fC+ Cg+ l  +++        C  C +  ++
  KOO22586.1  2 HFCFICGNMLMLETStggrlRFYCQTCPYVYHL 34
                69*******976666889987788888776655 PP

  == domain 2  score: 9.0 bits;  conditional E-value: 0.0019
         DZR   5 geelppdarfCseCgtklkavaa............edrCpsCgek 37 
                 +++ ++++  C++C ++   +++             ++C +Cg+ 
  KOO22586.1  59 WKNADQSDANCPKCTNRRAYYQQlqirsadepmttFYKCTECGHR 103
                 678899999********76666688889999**999******986 PP

>> Zn-ribbon_8  Zinc ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.0   0.1      0.66   4.7e+02       6      16 ..      23      33 ..      21      46 .. 0.72
   2 ?    6.0   0.1     0.018        13      23      34 ..      63      74 ..      57      78 .. 0.68
   3 ?    8.7   0.8    0.0026       1.9       6      14 ..      95     103 ..      94     106 .. 0.90

  Alignments for each domain:
  == domain 1  score: 1.0 bits;  conditional E-value: 0.66
  Zn-ribbon_8  6 YrCeeCghefe 16
                 + C+ C  ++ 
   KOO22586.1 23 FYCQTCPYVYH 33
                 78999976665 PP

  == domain 2  score: 6.0 bits;  conditional E-value: 0.018
  Zn-ribbon_8 23 dapltaCPeCgs 34
                 d ++  CP+C  
   KOO22586.1 63 DQSDANCPKCTN 74
                 556667****65 PP

  == domain 3  score: 8.7 bits;  conditional E-value: 0.0026
  Zn-ribbon_8   6 YrCeeCghe 14 
                  Y+C+eCgh+
   KOO22586.1  95 YKCTECGHR 103
                  9******98 PP

>> PHD  PHD-finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   2.5    0.0011      0.81       1      29 [.       3      36 ..       3      75 .. 0.77
   2 ?    2.8   0.1      0.16   1.1e+02      37      50 ..      87     101 ..      79     103 .. 0.63

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 0.0011
                SBTTTTS.....TTSTTSCEEEETTTSCEEETTT CS
         PHD  1 rCavCkk.....ksdeeeelvqCdgCkrwfHqkC 29
                +C +C++     +s+ ++   +C++C   +H k 
  KOO22586.1  3 FCFICGNmlmleTSTGGRLRFYCQTCPYVYHLKA 36
                699***999984444566779**********975 PP

  == domain 2  score: 2.8 bits;  conditional E-value: 0.16
                 HSHHSS.TBSSTTTH CS
         PHD  37 eekpeg.ewlCekCk 50 
                 +++p++  + C++C 
  KOO22586.1  87 ADEPMTtFYKCTECG 101
                 444444478899885 PP

>> Zn_ribbon_recom  Recombinase zinc beta ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   0.1    0.0015       1.1       7      32 ..       3      28 ..       1      52 [. 0.91
   2 ?    0.7   0.1       1.1   7.8e+02      37      46 ..      70      79 ..      59      85 .. 0.61
   3 ?    3.7   0.1      0.12        89       7      15 ..      96     104 ..      90     106 .. 0.82

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.0015
  Zn_ribbon_recom  7 rCgeCGspmtrrkrkgkrhyYrCsty 32
                     +C  CG+ +   +++g+r ++ C+t+
       KOO22586.1  3 FCFICGNMLMLETSTGGRLRFYCQTC 28
                     899********************986 PP

  == domain 2  score: 0.7 bits;  conditional E-value: 1.1
  Zn_ribbon_recom 37 kkCsnhsire 46
                      kC+n++ ++
       KOO22586.1 70 PKCTNRRAYY 79
                     2677775544 PP

  == domain 3  score: 3.7 bits;  conditional E-value: 0.12
  Zn_ribbon_recom   7 rCgeCGspm 15 
                      +C eCG++ 
       KOO22586.1  96 KCTECGHRW 104
                      8*****986 PP

>> DUF3797  Domain of unknown function (DUF3797)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.2       2.4   1.7e+03      16      24 ..       4      12 ..       3      27 .. 0.75
   2 ?   -2.1   0.1         5   3.6e+03      13      17 ..      24      29 ..      10      32 .. 0.71
   3 ?   12.8   1.0   0.00012     0.085      14      45 ..      67     101 ..      60     103 .. 0.84

  Alignments for each domain:
  == domain 1  score: -1.0 bits;  conditional E-value: 2.4
     DUF3797 16 CPeCgNnkv 24
                C  CgN  +
  KOO22586.1  4 CFICGNMLM 12
                778999755 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 5
     DUF3797 13 Yvq.CP 17
                Y+q CP
  KOO22586.1 24 YCQtCP 29
                664466 PP

  == domain 3  score: 12.8 bits;  conditional E-value: 0.00012
     DUF3797  14 vqCPeCgNnkvlNsegkviiedd...tfyreCkCg 45 
                 + CP+C N +    + +++  d+   tfy+  +Cg
  KOO22586.1  67 ANCPKCTNRRAYYQQLQIRSADEpmtTFYKCTECG 101
                 79****************766644559***99999 PP

>> zf-ZPR1  ZPR1 zinc-finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.0       2.3   1.7e+03       3      22 ..      25      44 ..      22      49 .. 0.61
   2 ?   11.6   0.5   0.00025      0.18       2      41 ..      68     105 ..      67     106 .. 0.89

  Alignments for each domain:
  == domain 1  score: -1.2 bits;  conditional E-value: 2.3
     zf-ZPR1  3 CpsCgkengetrllltkiPy 22
                C  C      + ++++++P 
  KOO22586.1 25 CQTCPYVYHLKAMVRVDVPL 44
                66665555566666666665 PP

  == domain 2  score: 11.6 bits;  conditional E-value: 0.00025
     zf-ZPR1   2 lCpsCgkengetrllltkiPyfkeviimsfeCehCgyknn 41 
                 +Cp+C   n + +  +++i    e + + ++C +Cg++ +
  KOO22586.1  68 NCPKCT--NRRAYYQQLQIRSADEPMTTFYKCTECGHRWR 105
                 8****6..568999999*******************9965 PP

>> zinc_ribbon_4  zinc-ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.3   0.2      0.23   1.7e+02       3      15 ..      23      35 ..      22      39 .. 0.83
   2 ?    4.0   0.2     0.067        48      26      32 ..      67      73 ..      61      77 .. 0.64
   3 ?    9.6   0.4    0.0012      0.86      27      36 .]      96     105 ..      90     105 .. 0.92

  Alignments for each domain:
  == domain 1  score: 2.3 bits;  conditional E-value: 0.23
  zinc_ribbon_4  3 itCpsCkakyeid 15
                   + C+ C  +y + 
     KOO22586.1 23 FYCQTCPYVYHLK 35
                   679***9999886 PP

  == domain 2  score: 4.0 bits;  conditional E-value: 0.067
  zinc_ribbon_4 26 vrCskCg 32
                   + C+kC 
     KOO22586.1 67 ANCPKCT 73
                   5566665 PP

  == domain 3  score: 9.6 bits;  conditional E-value: 0.0012
  zinc_ribbon_4  27 rCskCghvFr 36 
                    +C+ Cgh +r
     KOO22586.1  96 KCTECGHRWR 105
                    8********7 PP

>> Desulfoferrod_N  Desulfoferrodoxin, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.8   0.6     0.031        22       9      18 ..       4      13 ..       2      25 .. 0.77
   2 ?    7.4   0.1    0.0045       3.2       4      13 ..      92     101 ..      89     103 .. 0.84

  Alignments for each domain:
  == domain 1  score: 4.8 bits;  conditional E-value: 0.031
                     -TTT--EEEE CS
  Desulfoferrod_N  9 CevCGniVeV 18
                     C +CGn+   
       KOO22586.1  4 CFICGNMLML 13
                     99****8655 PP

  == domain 2  score: 7.4 bits;  conditional E-value: 0.0045
                      T-EEE-TTT- CS
  Desulfoferrod_N   4 levYkCevCG 13 
                      +  YkC+ CG
       KOO22586.1  92 TTFYKCTECG 101
                      567******* PP

>> zf-H2C2_2  Zinc-finger double domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.9   0.2     0.053        38      14      24 ..      22      32 ..      15      33 .. 0.81
   2 ?    2.2   0.1      0.39   2.8e+02      16      21 ..      68      73 ..      60      75 .. 0.86
   3 ?    4.8   0.3     0.061        44      13      21 ..      93     101 ..      88     103 .. 0.84

  Alignments for each domain:
  == domain 1  score: 4.9 bits;  conditional E-value: 0.053
   zf-H2C2_2 14 pyeCplCdkaF 24
                ++ C  C++++
  KOO22586.1 22 RFYCQTCPYVY 32
                599******87 PP

  == domain 2  score: 2.2 bits;  conditional E-value: 0.39
   zf-H2C2_2 16 eCplCd 21
                +Cp+C 
  KOO22586.1 68 NCPKCT 73
                6***95 PP

  == domain 3  score: 4.8 bits;  conditional E-value: 0.061
   zf-H2C2_2  13 kpyeCplCd 21 
                 ++y+C +C+
  KOO22586.1  93 TFYKCTECG 101
                 68******7 PP

>> CpXC  CpXC protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.0   3.8    0.0078       5.6       3      64 ..      25      93 ..      23     100 .. 0.75
   2 ?    0.6   0.3      0.78   5.6e+02      38      46 ..      95     103 ..      90     106 .. 0.77

  Alignments for each domain:
  == domain 1  score: 7.0 bits;  conditional E-value: 0.0078
        CpXC  3 CpaCgkefeaeiwtsidadedpelkeklldg.......slfeatCpkCgatakleapllyhdpekelli 64
                C+ C    + +++  +d+  ++++++++l g       +  +a CpkC +++++  +l +  +++ +  
  KOO22586.1 25 CQTCPYVYHLKAMVRVDVPLEHKAVDEVLGGpeawknaDQSDANCPKCTNRRAYYQQLQIRSADEPMTT 93
                999999999999999999999999999986643333336789*******99999888888775554444 PP

  == domain 2  score: 0.6 bits;  conditional E-value: 0.78
        CpXC  38 atCpkCgat 46 
                 ++C +Cg++
  KOO22586.1  95 YKCTECGHR 103
                 678888876 PP

>> DUF4379  Probable Zinc-ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.3   0.0       1.3   9.5e+02      29      40 ..      22      33 ..       9      42 .. 0.67
   2 ?    1.1   1.0      0.75   5.4e+02      50      56 .]      66      72 ..      57      72 .. 0.64
   3 ?    8.8   1.4    0.0028         2      29      41 ..      94     106 ..      79     107 .] 0.85

  Alignments for each domain:
  == domain 1  score: 0.3 bits;  conditional E-value: 1.3
     DUF4379 29 wWkCakCgheWe 40
                   C++C + + 
  KOO22586.1 22 RFYCQTCPYVYH 33
                456888877665 PP

  == domain 2  score: 1.1 bits;  conditional E-value: 0.75
     DUF4379 50 sskCpkC 56
                  +CpkC
  KOO22586.1 66 DANCPKC 72
                334***9 PP

  == domain 3  score: 8.8 bits;  conditional E-value: 0.0028
     DUF4379  29 wWkCakCgheWea 41 
                   kC +Cgh W++
  KOO22586.1  94 FYKCTECGHRWRE 106
                 579********96 PP

>> TF_Zn_Ribbon  TFIIB zinc-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   2.3       2.2   1.6e+03       3      10 ..       4      11 ..       2      31 .. 0.48
   2 ?   11.8   1.3   0.00018      0.13       3      27 ..      69     102 ..      67     107 .] 0.87

  Alignments for each domain:
  == domain 1  score: -1.3 bits;  conditional E-value: 2.2
                  ETTTTCEE CS
  TF_Zn_Ribbon  3 CPnCgstn 10
                  C +Cg+  
    KOO22586.1  4 CFICGNML 11
                  55666532 PP

  == domain 2  score: 11.8 bits;  conditional E-value: 0.00018
                   ETTTTCEE.C........HEETSTTCEEESSSSB CS
  TF_Zn_Ribbon   3 CPnCgstn.l........veDpergelvCtdCGl 27 
                   CP+C +++ +          +p+++ + Ct+CG 
    KOO22586.1  69 CPKCTNRRaYyqqlqirsADEPMTTFYKCTECGH 102
                   9***99986699999997777************6 PP

>> zf-Mss51  Zinc-finger of mitochondrial splicing suppressor 51
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.8   0.3     0.021        15      11      28 ..      17      34 ..       3      53 .. 0.83
   2 ?    4.6   3.5      0.05        36       2      23 ..      69     101 ..      43     105 .. 0.91

  Alignments for each domain:
  == domain 1  score: 5.8 bits;  conditional E-value: 0.021
    zf-Mss51 11 apkhvdfeCpdCGiptyc 28
                +  + +f C+ C ++++ 
  KOO22586.1 17 TGGRLRFYCQTCPYVYHL 34
                567899********9996 PP

  == domain 2  score: 4.6 bits;  conditional E-value: 0.05
    zf-Mss51   2 CPvpkhkqt...........apkhvdfeCpdCG 23 
                 CP + ++ +           +p    ++C +CG
  KOO22586.1  69 CPKCTNRRAyyqqlqirsadEPMTTFYKCTECG 101
                 99998777799999999999999999******9 PP

>> zf-C3HC4_4  zinc finger of C3HC4-type, RING
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.4   1.4      0.06        43      19      42 .]       2      28 ..       1      28 [. 0.84
   2 ?    4.8   0.3     0.044        32      28      42 .]      58      72 ..      56      72 .. 0.91
   3 ?    1.8   0.0      0.38   2.8e+02      31      42 .]      89     100 ..      82     104 .. 0.69

  Alignments for each domain:
  == domain 1  score: 4.4 bits;  conditional E-value: 0.06
  zf-C3HC4_4 19 sfClsCisslqkepdgeq...llCplC 42
                 fC+ C + l+ e +  +   + C  C
  KOO22586.1  2 HFCFICGNMLMLETSTGGrlrFYCQTC 28
                69******9999997765778999998 PP

  == domain 2  score: 4.8 bits;  conditional E-value: 0.044
  zf-C3HC4_4 28 lqkepdgeqllCplC 42
                 +k++d+++  Cp C
  KOO22586.1 58 AWKNADQSDANCPKC 72
                69999999******* PP

  == domain 3  score: 1.8 bits;  conditional E-value: 0.38
  zf-C3HC4_4  31 epdgeqllCplC 42 
                 ep  + + C++C
  KOO22586.1  89 EPMTTFYKCTEC 100
                 455555777777 PP

>> C1_2  C1 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   1.4   0.00097       0.7      19      44 ..       2      34 ..       1      35 [. 0.81
   2 ?    0.9   5.6      0.84     6e+02      30      38 ..      92     100 ..      58     104 .. 0.79

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.00097
        C1_2 19 fnCsaCgrk.....idgff..YsCseCdfslhv 44
                + C +Cg+      ++g +  ++C++C ++ h 
  KOO22586.1  2 HFCFICGNMlmletSTGGRlrFYCQTCPYVYHL 34
                57******9998874454478*********996 PP

  == domain 2  score: 0.9 bits;  conditional E-value: 0.84
        C1_2  30 gffYsCseC 38 
                  +fY+C+eC
  KOO22586.1  92 TTFYKCTEC 100
                 356****99 PP

>> zinc_ribbon_13  Nucleic-acid-binding protein containing Zn-ribbon domain (DUF2082)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.2   0.1       0.6   4.3e+02      37      44 ..      24      31 ..      20      41 .. 0.83
   2 ?    4.9   2.7     0.041        29       2      17 ..      69      84 ..      68     104 .. 0.85

  Alignments for each domain:
  == domain 1  score: 1.2 bits;  conditional E-value: 0.6
  zinc_ribbon_13 37 sCknCgYt 44
                    +C++C Y+
      KOO22586.1 24 YCQTCPYV 31
                    7****997 PP

  == domain 2  score: 4.9 bits;  conditional E-value: 0.041
  zinc_ribbon_13  2 CpKCgnteaevkevaa 17
                    CpKC n++a  +++++
      KOO22586.1 69 CPKCTNRRAYYQQLQI 84
                    *******999999886 PP

>> zf-HIT  HIT zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.4   0.3     0.011       8.2       3      10 ..       2       9 ..       1      12 [. 0.89
   2 ?    0.4   0.1      0.87   6.2e+02       4      10 ..      24      30 ..      21      33 .. 0.70
   3 ?    3.0   0.6      0.13        94      15      22 ..      68      75 ..      66      79 .. 0.83
   4 ?    4.8   0.2     0.036        25      14      22 ..      95     103 ..      93     104 .. 0.88

  Alignments for each domain:
  == domain 1  score: 6.4 bits;  conditional E-value: 0.011
                -B-TTT-S CS
      zf-HIT  3 klCgvCgf 10
                ++C +Cg+
  KOO22586.1  2 HFCFICGN 9 
                9*****98 PP

  == domain 2  score: 0.4 bits;  conditional E-value: 0.87
                B-TTT-S CS
      zf-HIT  4 lCgvCgf 10
                 C+ C++
  KOO22586.1 24 YCQTCPY 30
                5888876 PP

  == domain 3  score: 3.0 bits;  conditional E-value: 0.13
                E-TTT--E CS
      zf-HIT 15 kCpkCntr 22
                +CpkC  r
  KOO22586.1 68 NCPKCTNR 75
                6****766 PP

  == domain 4  score: 4.8 bits;  conditional E-value: 0.036
                 EE-TTT--E CS
      zf-HIT  14 YkCpkCntr 22 
                 YkC  C+ r
  KOO22586.1  95 YKCTECGHR 103
                 ******965 PP

>> OrfB_Zn_ribbon  Putative transposase DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.0   0.2     0.067        48      31      57 ..       4      33 ..       2      34 .. 0.70
   2 ?    4.6   4.0     0.044        32      29      57 ..      67     105 ..      57     107 .] 0.75

  Alignments for each domain:
  == domain 1  score: 4.0 bits;  conditional E-value: 0.067
  OrfB_Zn_ribbon 31 CseCgsknke...alsgrtfkCpnCgfead 57
                    C  Cg  +     +  + +f+C+ C ++++
      KOO22586.1  4 CFICGNMLMLetsTGGRLRFYCQTCPYVYH 33
                    66677766555444455589*****99987 PP

  == domain 2  score: 4.6 bits;  conditional E-value: 0.044
  OrfB_Zn_ribbon  29 ktCseCgsknke..........alsgrtfkCpnCgfead 57 
                      +C++C  +  +          ++ +  +kC++Cg+++ 
      KOO22586.1  67 ANCPKCTNRRAYyqqlqirsadEPMTTFYKCTECGHRWR 105
                     578888888877788888776666667789999999875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (107 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       674  (0.0375927); expected 358.6 (0.02)
Passed bias filter:                      373  (0.0208043); expected 358.6 (0.02)
Passed Vit filter:                        65  (0.00362541); expected 17.9 (0.001)
Passed Fwd filter:                        33  (0.00184059); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              25  [number of targets reported over threshold]
# CPU time: 0.40u 0.24s 00:00:00.64 Elapsed: 00:00:00.40
# Mc/sec: 809.27
//
Query:       KOO22587.1  [L=1918]
Description: transcription elongation factor spt6 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.6e-43  148.6   0.0    1.6e-43  148.6   0.0    1.8  2  SH2_2        SH2 domain
    4.1e-15   56.0   0.0    8.7e-15   55.0   0.0    1.5  1  HHH_7        Helix-hairpin-helix motif
    1.5e-07   32.2   0.4     0.0051   17.7   0.1    3.6  2  HHH_9        HHH domain
    5.6e-05   23.6   2.5    5.6e-05   23.6   2.5    6.0  6  SPT6_acidic  Acidic N-terminal SPT6
    0.00049   20.6   0.0      0.011   16.2   0.0    2.6  2  Tex_YqgF     Tex protein YqgF-like domain
  ------ inclusion threshold ------
      0.023   15.0   0.0      0.081   13.2   0.0    2.0  2  HHH_3        Helix-hairpin-helix motif
      0.054   13.3   0.1       0.28   10.9   0.0    2.3  2  YqgF         Holliday-junction resolvase-like of SPT6


Domain annotation for each model (and alignments):
>> SH2_2  SH2 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -5.8   3.4         7   1.8e+04       7      26 ..     266     284 ..     261     297 .. 0.39
   2 !  148.6   0.0   6.2e-47   1.6e-43       7     191 ..    1455    1646 ..    1449    1656 .. 0.90

  Alignments for each domain:
  == domain 1  score: -5.8 bits;  conditional E-value: 7
       SH2_2   7 eeedlkkeeekkkkeekkrk 26 
                 +e+d +++++k+++ +++r+
  KOO22587.1 266 DEDDEETRAKKEER-RARRE 284
                 22222222222222.22222 PP

  == domain 2  score: 148.6 bits;  conditional E-value: 6.2e-47
       SH2_2    7 eeedlkkeeekkkkeekkrkkyvkRvikHpnFknvsaeeaeellaskerGdvviRPSskgedhLtvtwkv.adgvyqhidvlEedkenefslgktLi 102 
                  e+e  +++eekk++e+++  +yv+R i+Hp+Fk+ +++++ ell+ +++G+v +RPSskg+ hLt ++k+ a g + h+d+ Eedk+++ +lg +L+
  KOO22587.1 1455 EQER-HAAEEKKRQERARTPQYVRRRIAHPLFKQGTHDQVAELLKVAPVGEVYFRPSSKGTAHLTASIKLsATGPLLHVDIAEEDKPSAAELGASLF 1550
                  4443.4444555555667777*************************************************889************************ PP

       SH2_2  103 igk........eeyeDLDeliarhvepmakkveellahekfkkgs.keeveelLreekkanpkrsvYafslskkkpgkflLsflankkarveheyvk 190 
                  +g+        e+++DLDe+iar++ep++++v+el  h+kf +++  + +e++L++ek+  p++++Y +s ++k + ++ Ls+l+++k    +e vk
  KOO22587.1 1551 LGRdeskkqpgERFDDLDEIIARYIEPLVENVRELEGHRKFVDEKgADVLERMLKAEKSGAPQTIPYRLSPNPKAADHYQLSYLPKQKV--IREFVK 1645
                  **99**************************************966155679**********************************9986..477776 PP

       SH2_2  191 v 191 
                   
  KOO22587.1 1646 A 1646
                  5 PP

>> HHH_7  Helix-hairpin-helix motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.0   0.0   3.4e-18   8.7e-15       4     103 ..    1109    1211 ..    1107    1212 .. 0.93

  Alignments for each domain:
  == domain 1  score: 55.0 bits;  conditional E-value: 3.4e-18
                  HTS---TTGGGS-HHHHHHHHHHHHHHHHHHH-EEHHHHCT-HHHHGGGGGSTT--HHHHHHHHHHHH...HC-S----TTHHHHTTSS-HHHHHHH CS
       HHH_7    4 lslsfhPlqellskeellkaletalvdivnlvgvdvnkavankyeaallkyiaGlGprkatdllkklk...rlnerlearsqlitkqilskkvflnc 97  
                    l +hP+   l+++ l + l  +lvd +  +gv v+    + +   +l+++ GlGprka  ll+ l+   +++ ++++r++l+ ++ l++ v+ n+
  KOO22587.1 1109 SNLPLHPMASQLPEDILERGLVNELVDCACRLGVHVDDVQRQAHRMHVLQFVPGLGPRKAGALLRDLQsrsANSLPIQSRQELLDEKLLGPVVWHNA 1205
                  56889************************************************************99833245679********************* PP

                  CCCEE- CS
       HHH_7   98 agflki 103 
                  agfl+ 
  KOO22587.1 1206 AGFLIF 1211
                  ****86 PP

>> HHH_9  HHH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.4   0.1   0.00019      0.48       6      38 ..    1228    1261 ..    1224    1290 .. 0.62
   2 !   17.7   0.1     2e-06    0.0051      37      70 .]    1286    1326 ..    1262    1326 .. 0.60

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00019
       HHH_9    6 TavHPEsYalakkllkklgldlkelige.eallk 38  
                    +HPE Y+ ak+++ +   d +e+ +e  ++++
  KOO22587.1 1228 CRIHPEEYEHAKRICFDGIYDENEEPEEnPQTMN 1261
                  67************99866666554433123333 PP

  == domain 2  score: 17.7 bits;  conditional E-value: 2e-06
       HHH_9   37 lkkldkkklaee.e......vgeptleDIleeLakPgrDpR 70  
                  l +l+ +++a+  +      +g +tl+DI +eLa+P rD+R
  KOO22587.1 1286 LDSLELDEFAQHlKesegarTGVETLTDIRSELAHPFRDMR 1326
                  444444443331111223448*******************9 PP

>> SPT6_acidic  Acidic N-terminal SPT6
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.6   2.5   2.2e-08   5.6e-05      43      76 ..     130     162 ..     119     167 .. 0.76
   2 ?   -0.1   2.6      0.57   1.5e+03       8      22 ..     169     183 ..     163     213 .. 0.52
   3 !   13.8  23.5   2.6e-05     0.065       1      52 [.     239     300 ..     239     327 .. 0.61
   4 ?    1.7   0.8      0.15   3.9e+02      16      42 ..     424     445 ..     404     481 .. 0.64
   5 ?   -0.7   1.5      0.86   2.2e+03       9      42 ..    1234    1267 ..    1231    1305 .. 0.54
   6 ?   -3.3   1.1       5.4   1.4e+04      36      46 ..    1459    1469 ..    1446    1479 .. 0.50

  Alignments for each domain:
  == domain 1  score: 23.6 bits;  conditional E-value: 2.2e-08
  SPT6_acidic  43 rkkkkkrreeeedaLdedDldLieentgvkvkrk 76 
                  +k kk++  + +d+Ld+dDl L+eentg++v r+
   KOO22587.1 130 KKAKKRKA-AVDDELDDDDLALLEENTGMDVARP 162
                  23333333.5679****************99886 PP

  == domain 2  score: -0.1 bits;  conditional E-value: 0.57
  SPT6_acidic   8 ddeeeerkvregFIv 22 
                  dd++e  ++ +gFI 
   KOO22587.1 169 DDDDESDEKSDGFIE 183
                  222222222345543 PP

  == domain 3  score: 13.8 bits;  conditional E-value: 2.6e-05
  SPT6_acidic   1 DssEE..edddeeeerkvregFIvdddeeeeeeeeseeeeekkrrkkkkkrre.........e 52 
                  D++EE     ++e e ++ +gFI+dd++e++ee ++ ++ee++ r+++k  r+         +
   KOO22587.1 239 DDEEEadAQSEDESEDEEMDGFIDDDEDEDDEETRA-KKEERRARRERKYARKgkkrlaagtA 300
                  7888855447778888899****9985444333333.33344444444443333344444432 PP

  == domain 4  score: 1.7 bits;  conditional E-value: 0.15
  SPT6_acidic  16 vregFIvdddeeeeeeeeseeeeekkr 42 
                  ++eg + d + e +e+e      +k+r
   KOO22587.1 424 EEEGVVEDAEGEADEDEA-----SKER 445
                  233333333222222111.....1111 PP

  == domain 5  score: -0.7 bits;  conditional E-value: 0.86
  SPT6_acidic    9 deeeerkvregFIvdddeeeeeeeeseeeeekkr 42  
                   + e+++++  + I d++ee ee+ ++ +e+ ++ 
   KOO22587.1 1234 EYEHAKRICFDGIYDENEEPEENPQTMNEAVDRA 1267
                   5566666666779999888777665443222222 PP

  == domain 6  score: -3.3 bits;  conditional E-value: 5.4
  SPT6_acidic   36 eeeekkrrkkk 46  
                   + +e+k+r+++
   KOO22587.1 1459 HAAEEKKRQER 1469
                   12222222222 PP

>> Tex_YqgF  Tex protein YqgF-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.2   0.0      0.19   4.9e+02       9      28 ..     905     924 ..     902     959 .. 0.82
   2 !   16.2   0.0   4.3e-06     0.011      81     126 .]    1046    1091 ..    1034    1091 .. 0.90

  Alignments for each domain:
  == domain 1  score: 1.2 bits;  conditional E-value: 0.19
                 -STT-EEEEEE-TTS-EEEE CS
    Tex_YqgF   9 gyrtGcKlavvdetgkvlet 28 
                 g r G Kl+++de+g++l++
  KOO22587.1 905 GARPGLKLVAIDENGTMLSH 924
                 7899************9976 PP

  == domain 2  score: 16.2 bits;  conditional E-value: 4.3e-06
                  GGG--EEEEE--TTHHHHHHSHHHHHH-TTS-HHHHHHHHHHHHHH CS
    Tex_YqgF   81 eelkvkyvivsEaGaSvYSaselaaeEfpdldvslrgavsiarrlq 126 
                  ++l  k+++v+Ea  + ++a+  a++E+p+ld  lr+a+s ar lq
  KOO22587.1 1046 NKLPFKAMLVDEAIPARWAATVAAQSELPELDTALRTALSSARMLQ 1091
                  45678999***********************************998 PP

>> HHH_3  Helix-hairpin-helix motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.8   0.0       6.2   1.6e+04      30      55 ..     453     479 ..     453     481 .. 0.78
   2 ?   13.2   0.0   3.1e-05     0.081      16      64 ..    1157    1209 ..    1153    1210 .. 0.90

  Alignments for each domain:
  == domain 1  score: -3.8 bits;  conditional E-value: 6.2
       HHH_3  30 IvayRekn.GpfksreeLlkvkglgpk 55 
                 I  yR++   ++ ++ +L  +++l+ +
  KOO22587.1 453 IAYYRKEDwAAVLTPAQLHAIPELDRE 479
                 667888885588899999999999876 PP

  == domain 2  score: 13.2 bits;  conditional E-value: 3.1e-05
       HHH_3   16 LqklpGlgpklAknIv...ayReknG.pfksreeLlkvkglgpktfeqlagfl 64  
                  Lq +pGlgp++A +++   + R +n  p++sr+eLl+ k lgp     +agfl
  KOO22587.1 1157 LQFVPGLGPRKAGALLrdlQSRSANSlPIQSRQELLDEKLLGPVVWHNAAGFL 1209
                  999************733369****77************************98 PP

>> YqgF  Holliday-junction resolvase-like of SPT6
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.0      0.79     2e+03     105     133 ..    1014    1044 ..     943    1049 .. 0.60
   2 ?   10.9   0.0   0.00011      0.28     100     149 ..    1051    1100 ..    1038    1101 .. 0.90

  Alignments for each domain:
  == domain 1  score: -1.6 bits;  conditional E-value: 0.79
                  --TTHHHHHTSHHHHHH..STT--HHHHHHH CS
        YqgF  105 ddevailYqnskkaeae..frdkPpllkyav 133 
                   de+a+ Y  + +  ++    ++P +++ a 
  KOO22587.1 1014 GDEMARDYYRASRPHNDqpMEKYPNISREAF 1044
                  4888888888777666522457888888775 PP

  == domain 2  score: 10.9 bits;  conditional E-value: 0.00011
                  -EEE---TTHHHHHTSHHHHHHSTT--HHHHHHHHHHHHHH-HHHHHHCS CS
        YqgF  100 gvilvddevailYqnskkaeaefrdkPpllkyavalaRkiqdPLleyaql 149 
                  + +lvd+ +  ++     a+ e +++ + l+ a++ aR +qdP  e  ++
  KOO22587.1 1051 KAMLVDEAIPARWAATVAAQSELPELDTALRTALSSARMLQDPFAELCHV 1100
                  56799**************************************9998776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1918 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1051  (0.0586201); expected 358.6 (0.02)
Passed bias filter:                      512  (0.0285571); expected 358.6 (0.02)
Passed Vit filter:                        72  (0.00401584); expected 17.9 (0.001)
Passed Fwd filter:                        21  (0.00117129); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 1.23u 0.33s 00:00:01.56 Elapsed: 00:00:00.50
# Mc/sec: 11457.00
//
Query:       KOO22588.1  [L=367]
Description: hypothetical protein Ctob_003346 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.3e-13   50.8  15.8    3.5e-13   49.4  15.8    1.6  1  Trp_Tyr_perm     Tryptophan/tyrosine permease family
  ------ inclusion threshold ------
       0.13   11.5   0.1       0.23   10.8   0.1    1.3  1  PHY              Phytochrome region


Domain annotation for each model (and alignments):
>> Trp_Tyr_perm  Tryptophan/tyrosine permease family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.4  15.8   3.9e-17   3.5e-13      62     365 ..      14     324 ..       5     336 .. 0.89

  Alignments for each domain:
  == domain 1  score: 49.4 bits;  conditional E-value: 3.9e-17
  Trp_Tyr_perm  62 keeasfttlakkllGkkgniivalvllfllyiLlvAyisggGsilselleeasgialsarlavliftlvlgalvvlstkavdrinrvllflklvafv 158
                   ++ +sf++l  + +G+ g   v l++++l+   +v  +++g ++l++ +++as  a+ a    ++ + v+ +  ++s+++v+ in +l ++ + a+ 
    KOO22588.1  14 SAPVSFASLGYDAFGEAGGRAVSLTFIILMITTMVSQVAKGDALLAS-VPMAS--AFAAVRCGVLAASVSTFARLASANMVSLINGGLTIGFIGAVS 107
                   4589************************************9999998.56655..466677777778888888888999****************** PP

  Trp_Tyr_perm 159 lllalllskvksdvLlsaksdtskvslvlsalPvlllsfGFhgivpslvkyldknvkkvkkailiGtliaLvlyllWelivlGnlpreelariiakg 255
                    l+a + + ++ + L++     +++sl+++a+P ll    + ++vp ++++l     +v+++i++G+l  L++ l+W  + +       l  + + g
    KOO22588.1 108 TLFAAGWPLADWSRLAR-----ADWSLAFPAAPTLLQLHVYCEVVPVVCSCLSYARARVRRVIVVGSLALLAIQLFWSSLGIA------L-VAPSLG 192
                   *****************.....78*****************************************************865443......3.334556 PP

  Trp_Tyr_perm 256 gnldtlveallelleskslelavelFsflAlatSflGvalglfdyladlfklsdskkgrlklglvtflp...................PlvlalffP 333
                   g    +++  + +l++ ++  a  + +  A++t +lG+a +l  + +d+ + s+++    ++++                        P  +a+   
    KOO22588.1 193 GGALRADPVASLMLAHGYVGAATAATAATAVLTTILGTARALHIFSLDATRASKTTGAPSSSASAGAGGragggglpslllyaatiaiPTTIATTAG 289
                   66778899999*****************************************8888888888777666699*********************99998 PP

  Trp_Tyr_perm 334 eg..flkalgyAG.laatilavilPallawkarkk 365
                   ++  +  a++ AG +  ++l +++P+l+a++ r+ 
    KOO22588.1 290 STaaYFGAIDLAGaYPVALLWGLVPPLMAMRRRRT 324
                   7622567******99***************99986 PP

>> PHY  Phytochrome region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.1   2.6e-05      0.23      68     103 ..      46      81 ..      29      86 .. 0.88

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 2.6e-05
                 TTTTSEEEESBCCCTSGGGGCCCCCHSEEEEEEESS CS
         PHY  68 eseeevfstdsLseayPeaaaladvasGllaislss 103
                 ++ ++v + d+L   +P a+a+a+v +G+la+s+s 
  KOO22588.1  46 TMVSQVAKGDALLASVPMASAFAAVRCGVLAASVST 81 
                 567889999************************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (367 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       596  (0.0332422); expected 358.6 (0.02)
Passed bias filter:                      229  (0.0127726); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.50u 0.27s 00:00:00.77 Elapsed: 00:00:00.45
# Mc/sec: 2439.59
//
Query:       KOO22589.1  [L=448]
Description: arginine biosynthesis bifunctional protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   2.6e-111  372.0   0.0   3.2e-111  371.7   0.0    1.0  1  ArgJ      ArgJ family


Domain annotation for each model (and alignments):
>> ArgJ  ArgJ family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  371.7   0.0  1.8e-115  3.2e-111      10     376 .]      48     448 .]      39     448 .] 0.93

  Alignments for each domain:
  == domain 1  score: 371.7 bits;  conditional E-value: 1.8e-115
                 S..SXXEEEEEEEEEEEE.EEEEEXXSSXXHHHHHHHHHHH.HHSEEEEEEEEEEXXXSXHHHHHHHHHHHHHHHHHHHTSX..GGGEEEEEEEESSXX CS
        ArgJ  10 kkkkkdlalivseepasa.aavfTknkvkAapvkvsrevlkkkkgaravvvnsgnANavtgeqGledaeemaeavaealgik..eeevlvasTGviGer 105
                 k+  ++l++++ + p+   aavfT+nk+ +apvkv r++l+ +  ++avv+n + +N++ + +G+ ++e++++ va+al+++  +e vl+ sTGviG +
  KOO22589.1  48 KTAVMNLTVLALDAPTDDwAAVFTRNKFPGAPVKVGRARLAGGGALQAVVINNKISNVCSAGDGVMASEAVCNGVADALKLSggAEAVLPLSTGVIGWQ 146
                 4458899999999998777*********************98878**********************************9987789************* PP

                 XXHHHHHHHHHHX....X....HHHHHHHXSSXSSXXEEEEEEEETEEEEEEEEEEXSSSXXXXEE--EEEEEE-----HHHHHHHHHHHHHHTGGGB- CS
        ArgJ 106 lpmekieagieklvekle....eeaaeAimTTDtvpKlaavevelgkevtiagiaKGaGmihPnmaTmLafittDaavsaealqellkeavdksFnsis 200
                 lp+e++++++++++++l+      aa++i+TTD +pKl++v++      ti+g+aKGaGmi+PnmaTmLaf++tD+av +++l+++l +a+d sFn+ s
  KOO22589.1 147 LPVERMLEELPAAARTLKrgsaLPAAKSICTTDRFPKLRSVRAC---GGTITGFAKGAGMIEPNMATMLAFVLTDVAVPRAELRTMLGRAADASFNCAS 242
                 ***************998888889*****************984...889************************************************* PP

                 SSS---SS-EEEEEE--TT....TT.STTHHHHHHHHHHHHHHHHHHHHHTSTT-S-EEEEEEEEESSHHHHHHHHHHHHT-HHHHHHHHTT---HHHH CS
        ArgJ 201 vDgdtSTnDtvlllAngaa....eeeeedleefeealtevlqeLakqivrDGEGatklveveVkgakseeeAkkvaksvanssLvKtAlfGeDanwGRi 295
                 vD+d+ST+D++++l++ga+      + +  +efe+alte++++La+++vr+GEG t++++v V+ga++e+ A+ ++k+v+ns+L+K+A++G+D+n+GR+
  KOO22589.1 243 VDADQSTSDSLVCLSSGASlgkpPLDAKGCAEFEAALTELCARLAEDVVRNGEGTTHVIRVAVRGAPTEAVARGAGKAVVNSPLFKSAVAGNDPNVGRL 341
                 ******************877663337899********************************************************************* PP

                 HHHHHHSS....S---TTS-EE..TTEEEEETTE..E----HHHHHHHHH-SS....................EEEEEE--SSSEEEEEEEE---HHHH CS
        ArgJ 296 laavGyag....aeldpekvsvllgevkvlekge..peevdeerakeilkeee....................veievdlgegeeeatvwtcDLsyeYv 368
                 +aavG+       eld ++ ++++g+ +++ kg+   ++ +e++  e++k ++                    veie+dl +g++++tv+++DL++eYv
  KOO22589.1 342 VAAVGSYLgkvaPELDLSACTMRMGGRTIFAKGAfsLDAATEDELYEHMKGASlvnpvageppslpypphercVEIEIDLAAGKAACTVHGSDLTQEYV 440
                 *****8842333569999999999*********9754556888999999988788899999999999999999************************** PP

                 HHHTT-XX CS
        ArgJ 369 kiNadYrt 376
                 +iNadYr+
  KOO22589.1 441 SINADYRS 448
                 ******97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (448 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       230  (0.0128284); expected 358.6 (0.02)
Passed bias filter:                      194  (0.0108205); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.25s 00:00:00.72 Elapsed: 00:00:00.45
# Mc/sec: 2996.98
//
Query:       KOO22590.1  [L=494]
Description: hypothetical protein Ctob_003343 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    7.6e-08   32.3   0.2    1.3e-07   31.6   0.2    1.4  1  TIG       IPT/TIG domain
     0.0006   20.0   0.0     0.0012   19.0   0.0    1.6  1  Ank_5     Ankyrin repeats (many copies)
     0.0067   17.0   0.0      0.013   16.1   0.0    1.5  1  Ank_2     Ankyrin repeats (3 copies)
  ------ inclusion threshold ------
      0.015   15.8   0.0      0.038   14.6   0.0    1.6  1  Ank_4     Ankyrin repeats (many copies)
      0.018   15.5   0.1      0.055   14.0   0.1    1.8  1  Ank_3     Ankyrin repeat
      0.098   13.1   0.2       0.36   11.3   0.2    2.0  1  Ank       Ankyrin repeat


Domain annotation for each model (and alignments):
>> TIG  IPT/TIG domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.6   0.2   4.3e-11   1.3e-07       1      85 []     261     344 ..     261     344 .. 0.95

  Alignments for each domain:
  == domain 1  score: 31.6 bits;  conditional E-value: 4.3e-11
         TIG   1 PvissisPnsgsasgGttititGtnFgtnssdssvtiggtpctvtasvssttlvcttPpgp...sgllnvsvlvdgaqlrsdnttftY 85 
                 P+i s+s ++g ++gGt ++i+G+ F   s+ ++v +g++ +t ++  + + +++++P+ p   +++++v +++dg    s+++ +tY
  KOO22590.1 261 PQIGSLSATTGHVAGGTPLWIQGSRF---STRTRVCFGSAIATDVHACNGSLITVVVPASPsgrAETVEVRLTHDG-LNWSNPLLYTY 344
                 8999**********************...*********99887777***************99888**********.*********99 PP

>> Ank_5  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.0   0.0   4.2e-07    0.0012       8      53 ..     410     455 ..     403     458 .. 0.86

  Alignments for each domain:
  == domain 1  score: 19.0 bits;  conditional E-value: 4.2e-07
       Ank_5   8 dvnrldgggntpLhvAakygaadvvrlLlargadlnltdsrGltal 53 
                 d+ r d +g + Lh+A+  ++a  v+lLla ++d++  d  G +a 
  KOO22590.1 410 DLSRVDMHGRSLLHYACALRHAGAVKLLLAARVDPRGVDVAGMSAA 455
                 5566777899***************************999985555 PP

>> Ank_2  Ankyrin repeats (3 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.0   4.4e-06     0.013      20      60 ..     414     458 ..     392     480 .. 0.67

  Alignments for each domain:
  == domain 1  score: 16.1 bits;  conditional E-value: 4.4e-06
       Ank_2  20 adpnkngktaLhyAakngnleivklLleh......adndgrtpLhyA 60 
                 +d+   g++ LhyA+   +  +vklLl++      +d  g+++  +A
  KOO22590.1 414 VDM--HGRSLLHYACALRHAGAVKLLLAArvdprgVDVAGMSAADWA 458
                 333..599999999999999999999997734434334455554444 PP

>> Ank_4  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.6   0.0   1.3e-05     0.038       2      42 ..     419     458 ..     418     466 .. 0.89

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 1.3e-05
       Ank_4   2 ltaLhyaaisgrlelvrlLlekgadinaqdnrsGetalhiA 42 
                 +++Lhya++  +  +v+lLl+ ++d+  + +  G++a + A
  KOO22590.1 419 RSLLHYACALRHAGAVKLLLAARVDPRGV-DVAGMSAADWA 458
                 899***********************999.99999998877 PP

>> Ank_3  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.1   1.8e-05     0.055       1      29 [.     417     444 ..     417     448 .. 0.91

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 1.8e-05
       Ank_3   1 nGetpLhlAarsgnleivkfLlenkgadv 29 
                 +G+++Lh+A+   +   vk+Ll    +d+
  KOO22590.1 417 HGRSLLHYACALRHAGAVKLLLA-ARVDP 444
                 79*************99*****9.78887 PP

>> Ank  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.2   0.00012      0.36       1      26 [.     417     443 ..     417     449 .. 0.80

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00012
                 TSBBHHHHHH...HHTTHHHHHHHH.TTTS CS
         Ank   1 dGnTPLHlAa...tngkkriiklLL.hGAn 26 
                 +G++ LH+A+   + g    +klLL  + +
  KOO22590.1 417 HGRSLLHYACalrHAG---AVKLLLaARVD 443
                 699*******777777...*****955555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (494 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       374  (0.0208601); expected 358.6 (0.02)
Passed bias filter:                      288  (0.0160634); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.50u 0.25s 00:00:00.75 Elapsed: 00:00:00.42
# Mc/sec: 3549.89
//
Query:       KOO22591.1  [L=288]
Description: hypothetical protein Ctob_003348 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        0.1   13.0   0.4          1    9.8   0.0    2.7  3  PBD        P21-Rho-binding domain
       0.13   12.7   1.0        8.2    6.9   0.6    2.7  3  DASH_Dad2  DASH complex subunit Dad2


Domain annotation for each model (and alignments):
>> PBD  P21-Rho-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   0.0   0.00011         1      25      52 ..     106     133 ..      97     138 .. 0.78
   2 ?   -1.0   0.0      0.27   2.4e+03      15      37 ..     184     209 ..     183     224 .. 0.80
   3 ?   -1.5   0.1      0.38   3.4e+03      15      30 ..     272     287 ..     272     288 .] 0.90

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.00011
                 S--CCHCCCHHHT.TTSXXXBEXXXXXX CS
         PBD  25 glPpewkkllkssgItedelkenpkavl 52 
                  + +ewk+++k++gI++++l +  ka++
  KOO22591.1 106 KFSTEWKEVFKAAGIRKEDLSDPVKAAR 133
                 6789***************998777766 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 0.27
                 EEETTTTEEE...S--CCHCCCHHHT CS
         PBD  15 Gwdgdsgnft...glPpewkkllkss 37 
                 G  ++sg f+   + ++ew++  +s+
  KOO22591.1 184 GLRSQSGRFVpnsSQLKEWRSEPDSE 209
                 55678899988888899999887765 PP

  == domain 3  score: -1.5 bits;  conditional E-value: 0.38
                 EEETTTTEEES--CCH CS
         PBD  15 GwdgdsgnftglPpew 30 
                 +wd ++  ++  P++w
  KOO22591.1 272 SWDDQTCRDNRTPKDW 287
                 59****9999999999 PP

>> DASH_Dad2  DASH complex subunit Dad2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.0      0.52   4.7e+03      51      66 ..     110     125 ..     108     133 .. 0.77
   2 ?    2.9   0.0     0.017   1.5e+02      12      38 ..     146     172 ..     144     177 .. 0.86
   3 ?    6.9   0.6   0.00092       8.2       7      34 ..     239     267 ..     237     272 .. 0.90

  Alignments for each domain:
  == domain 1  score: -1.9 bits;  conditional E-value: 0.52
   DASH_Dad2  51 nWqnvlraismaslkl 66 
                 +W++v++a+ + +  l
  KOO22591.1 110 EWKEVFKAAGIRKEDL 125
                 7*****9988776665 PP

  == domain 2  score: 2.9 bits;  conditional E-value: 0.017
   DASH_Dad2  12 eaLkqlrdlsdslakqleeLeeklstl 38 
                 +aL +l+  +d+l++ ++eL+ k ++ 
  KOO22591.1 146 AALPELQGFTDKLEDLITELNAKQAKG 172
                 57999****************998876 PP

  == domain 3  score: 6.9 bits;  conditional E-value: 0.00092
   DASH_Dad2   7 KraELeaLkqlrd.lsdslakqleeLeek 34 
                 K++E+ +L ++r+ ++++++ +l e+e++
  KOO22591.1 239 KQEEMSELDKIREkIAQKMKARLAEMEQQ 267
                 9**********9647999********997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (288 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       884  (0.0493056); expected 358.6 (0.02)
Passed bias filter:                      643  (0.0358637); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.45u 0.26s 00:00:00.71 Elapsed: 00:00:00.39
# Mc/sec: 2208.97
//
Query:       KOO22592.1  [L=160]
Description: hypothetical protein Ctob_003349 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (160 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       549  (0.0306208); expected 358.6 (0.02)
Passed bias filter:                      229  (0.0127726); expected 358.6 (0.02)
Passed Vit filter:                        12  (0.000669307); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.22s 00:00:00.57 Elapsed: 00:00:00.37
# Mc/sec: 1312.15
//
Query:       KOO22593.1  [L=129]
Description: DNA polymerase epsilon subunit 3, partial [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    4.8e-12   46.0   0.0    7.2e-12   45.4   0.0    1.3  1  CBFD_NFYB_HMF  Histone-like transcription factor (CBF/NF-Y) a
    0.00035   20.9   0.0    0.00043   20.7   0.0    1.2  1  Histone        Core histone H2A/H2B/H3/H4
  ------ inclusion threshold ------
       0.11   12.3   0.0       0.18   11.6   0.0    1.4  1  MauE           Methylamine utilisation protein MauE


Domain annotation for each model (and alignments):
>> CBFD_NFYB_HMF  Histone-like transcription factor (CBF/NF-Y) and archaeal histone
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.4   0.0   1.2e-15   7.2e-12       3      65 .]      45     108 ..      43     108 .. 0.98

  Alignments for each domain:
  == domain 1  score: 45.4 bits;  conditional E-value: 1.2e-15
                    XXHHHHHHHHHCC.TTXS-B-HHHHHHHHHHHHHHHHHHHHHHHHHHCCTTSSCE-HHHHHHHH CS
  CBFD_NFYB_HMF   3 LPiarvkkImksd.pdarkiakdAkeliaecveefieelaseAaeickkekrKtikaehiklAv 65 
                    LP+a++ +I++s  pd  ++  + k+ + +++++fi +l++ A++i+k+++r t+++++++ A+
     KOO22593.1  45 LPLAPIMRIIRSKlPDGVMVGTETKKAFGKACSLFILYLTTIASDIAKENSRSTVTGADVLAAL 108
                    9************************************************************997 PP

>> Histone  Core histone H2A/H2B/H3/H4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.7   0.0   7.2e-08   0.00043      62     129 ..      42     109 ..      10     111 .. 0.86

  Alignments for each domain:
  == domain 1  score: 20.7 bits;  conditional E-value: 7.2e-08
                 SXHHHHHHHHHHHH.TTSSSXEEXHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTXSEEXHHHHHHHHH CS
     Histone  62 iqklpfaRvvreivksekedlrisaeavlalqealEallvelfeeAnllakhaKRvTitpkDiqlArr 129
                   +lp a ++r i+++  ++ ++  e+  a+ +a+  ++  l++ A+ +ak++ R+T+t  D+ +A+r
  KOO22593.1  42 VLALPLAPIMRIIRSKLPDGVMVGTETKKAFGKACSLFILYLTTIASDIAKENSRSTVTGADVLAALR 109
                 5567777778888888889***********************************************98 PP

>> MauE  Methylamine utilisation protein MauE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0     3e-05      0.18      45      98 ..      39      92 ..      37     104 .. 0.93

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 3e-05
        MauE 45 lPellarpvalvlPlvelavavglvvppaaelaavvaagllvvfalalainvar 98
                +P++la p+a ++ ++   +  g++v + ++ a + a++l++++  ++a ++a+
  KOO22593.1 39 VPDVLALPLAPIMRIIRSKLPDGVMVGTETKKAFGKACSLFILYLTTIASDIAK 92
                69*******************************************999988876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (129 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       413  (0.0230353); expected 358.6 (0.02)
Passed bias filter:                      360  (0.0200792); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.39u 0.24s 00:00:00.63 Elapsed: 00:00:00.41
# Mc/sec: 944.62
//
Query:       KOO22594.1  [L=761]
Description: kinesin-like protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
   2.2e-118  395.0   0.0   2.2e-118  395.0   0.0    1.7  2  Kinesin        Kinesin motor domain
      9e-27   93.8   2.9    2.6e-26   92.4   0.0    2.7  2  Microtub_bd    Microtubule binding
  ------ inclusion threshold ------
        5.2    7.7  14.8       0.27   11.8   6.0    2.7  2  Acyl-CoA_ox_N  Acyl-coenzyme A oxidase N-terminal
        6.5    6.9  20.0       0.75    9.9  12.0    3.1  3  Kinesin_assoc  Kinesin-associated
        8.3    4.8   6.9       0.47    8.9   0.5    1.9  2  Corona_S2      Coronavirus S2 glycoprotein


Domain annotation for each model (and alignments):
>> Kinesin  Kinesin motor domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  395.0   0.0  6.2e-122  2.2e-118       1     333 []      35     360 ..      35     360 .. 0.97
   2 ?   -4.4   1.9       1.9   6.8e+03      40     183 ..     616     651 ..     580     664 .. 0.45

  Alignments for each domain:
  == domain 1  score: 395.0 bits;  conditional E-value: 6.2e-122
                 EE-SSSHHHHTTTTEBCEEEECTCTCEEEEEEEEECTTSCEEEEESEEEETTS-HHHHHHHHHHHHHHHHHTTSEEEEEEEESTTSSHHHHHTBC..TT CS
     Kinesin   1 RvRplnekekeeeeeeeveveeekkeeekkskkenkeeeekkfkFdkvfdeeatqeevyeetakplvesvleGynatifaYGqtgsGKTyTmegk..ee 97 
                 R+Rpln+ke+ +  e++v+v+   k+ +   +   ++e  k+f+Fd+v+de++tqe +y +ta+++vesv++G+n+tifaYGqtg+GKT+Tmeg   + 
  KOO22594.1  35 RCRPLNSKERGDGRERIVHVD--PKNGTCVVSPIGSNEPPKTFTFDQVYDESVTQEYIYMNTASRIVESVIDGFNGTIFAYGQTGTGKTFTMEGVndPP 131
                 9*****************998..677888888999999********************************************************97778 PP

                 TSBSHHHHHHHHHHHHHHHCTTTHEEEEEEEEEEEEEETTEEEETTSTTTTSTSSEBEEEECTTSCCEEETTS--EEESSHHHHHHHHHHHHHHHTSTT CS
     Kinesin  98 eeeGiipraleelFesikkekeekekefsvkvsylEiYneeiyDLLeskkskkkkklkiredskkgevyvkgltevevksaeevlellekgeknrkvae 196
                 e +Giipra++++F+ i+++  + ++ef v+ sylEiYneei+DLL+++   +++kl+++e+++ g vyv++lt+  vks++e+ +l + g+knr+v++
  KOO22594.1 132 ELRGIIPRAFQQIFDLIAARGGQ-NTEFLVRASYLEIYNEEIRDLLSKN---TANKLELKENPDAG-VYVRDLTSYVVKSTRECDKLRDFGAKNRHVGA 225
                 99***************999887.99*********************99...5667********98.******************************** PP

                 SSCTSHHCCSEEEEEEEEEEEETTTTTCEEEEEEEEEEEEEEECCCHHHHSSTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCCTSTSCGGGSHHHHHTG CS
     Kinesin 197 tklneeSSRSHavftitleqknlkeeteekvkisklnLvDLAGsErasktgaaegerlkEaaniNkSLlaLgrvisaLaekkkskhipYRdSkLTrlLq 295
                 t++n++SSRSH+++tit+e+ ++ e+ +++++++klnLvDLAGsEr+skt+a +g+rlkEa++iN SL+aLg++isaL++  ks+hipYRdS+LTrlLq
  KOO22594.1 226 TAMNQDSSRSHSIYTITVESCETREDGTSAIRMGKLNLVDLAGSERQSKTQA-SGDRLKEATKINLSLSALGNCISALVDG-KSSHIPYRDSRLTRLLQ 322
                 **********************99999999*********************5.7999************************.***************** PP

                 GGHSSSSEEEEEEEE-TBGGGHHHHHHHHHHHHHHCTT CS
     Kinesin 296 dsLgGnsktlmivtvspssenleetlstlkfaerakei 333
                 dsLgGn+kt+m++++ p++ n++et+stl++a+rak+i
  KOO22594.1 323 DSLGGNTKTVMVANLGPADWNFDETMSTLRYANRAKDI 360
                 ************************************87 PP

  == domain 2  score: -4.4 bits;  conditional E-value: 1.9
                 CEEEEESEEEETTS-HHHHHHHHHHHHHHHHHTTSEEEEEEEESTTSSHHHHHTBCTTTSBSHHHHHHHHHHHHHHHCTTTHEEEEEEEEEEEEEETTE CS
     Kinesin  40 ekkfkFdkvfdeeatqeevyeetakplvesvleGynatifaYGqtgsGKTyTmegkeeeeeGiipraleelFesikkekeekekefsvkvsylEiYnee 138
                 +k+ k +k                                                                                           
  KOO22594.1 616 DKTAKLKK------------------------------------------------------------------------------------------- 623
                 22222222........................................................................................... PP

                 EEETTSTTTTSTSSEBEEEECTTSCCEEETTS--EEESSHHHHHH CS
     Kinesin 139 iyDLLeskkskkkkklkiredskkgevyvkgltevevksaeevle 183
                                  +  + k+ +  + +l+++  ++ e++l+
  KOO22594.1 624 -----------------LFAKFKQAQAEILELQQEYNREKEDILD 651
                 .................2222222234444444444444444444 PP

>> Microtub_bd  Microtubule binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   92.4   0.0   7.1e-30   2.6e-26      21     149 .]      29     176 ..      26     176 .. 0.89
   2 ?   -2.3   3.5       1.1   3.8e+03       1      24 [.     512     535 ..     512     643 .. 0.76

  Alignments for each domain:
  == domain 1  score: 92.4 bits;  conditional E-value: 7.1e-30
                  B-EEEEEEECCCS-T........EEEETTT...........TTTEEEE-SEEEECTTHCCCCCCCC.HHHHHHHHTT--EEEEEEES........... CS
  Microtub_bd  21 niRvfarvrpelesek.......akikfpe........eekkkkkefsFdrvfeseseqeevfeei.sqlvqsaldgynvcifaygqTGsGKtyTmeg 102
                  ++Rv +r+rp +++e+       ++++ ++          ++  k+f+Fd+v++++ +qe ++ ++ s +v+s++dg n +ifaygqTG GKt+Tmeg
   KOO22594.1  29 SVRVCVRCRPLNSKERgdgreriVHVDPKNgtcvvspiGSNEPPKTFTFDQVYDESVTQEYIYMNTaSRIVESVIDGFNGTIFAYGQTGTGKTFTMEG 126
                  58********9999988999876455544466777788778999****************99866527899*************************** PP

                  ........ST-HCHHHHHHHHHHCCTSCCCCEEEEEEEEEEESS-EEETT CS
  Microtub_bd 103 ...eeeeagmipraveeifetiselkekgwkyeielqfveiynekvqDlL 149
                       e +g ipra+++if+ i+ +  ++ ++ ++++++eiyne+++DlL
   KOO22594.1 127 vndPPELRGIIPRAFQQIFDLIAARGGQNTEFLVRASYLEIYNEEIRDLL 176
                  87667889*****************************************8 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 1.1
                  HHHHHHHHHHCHHHHHHHCTB-EE CS
  Microtub_bd   1 lekeetlRrkleNtiqelkGniRv 24 
                  ++++e +R  l  ++ ++k +iR 
   KOO22594.1 512 MRRKEEQRDALTQQLADMKTQIRK 535
                  678889999999999999999995 PP

>> Acyl-CoA_ox_N  Acyl-coenzyme A oxidase N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.2   1.4       0.4   1.4e+03      17      63 ..     488     535 ..     485     562 .. 0.69
   2 ?   11.8   6.0   7.6e-05      0.27      15      74 ..     582     641 ..     575     672 .. 0.78

  Alignments for each domain:
  == domain 1  score: -0.2 bits;  conditional E-value: 0.4
                    HHHHHHHHHHCT-GGGS-SSTGGGS-HHHHHHHHHHHH.HHHHHHHHH CS
  Acyl-CoA_ox_N  17 errrelesllesdpefddaedyyflsreeryeealrka.trllkklre 63 
                    e+ +++++ l +  e d+a  ++++ r+e  ++al++  + +   +r+
     KOO22594.1 488 EEVERIKQELLTAHESDRAALREEMRRKEEQRDALTQQlADMKTQIRK 535
                    556788999999999999999999999999988886540334334443 PP

  == domain 2  score: 11.8 bits;  conditional E-value: 7.6e-05
                    HHHHHHHHHHHHCT-GGGS-SSTGGGS-HHHHHHHHHHHHHHHHHHHHHTTSBTTCHHHH CS
  Acyl-CoA_ox_N  15 klerrrelesllesdpefddaedyyflsreeryeealrkatrllkklrelqierkeseee 74 
                    k ++ +el++ le + e++  +++++ s +e  e++++k+++l++k ++ q+e  e ++e
     KOO22594.1 582 KRREEEELQKKLELEEEVSLGQERQYKSLQEEVEDKTAKLKKLFAKFKQAQAEILELQQE 641
                    3445559********************************************987544444 PP

>> Kinesin_assoc  Kinesin-associated
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9  12.0   0.00021      0.75       3     145 ..     366     536 ..     365     541 .. 0.48
   2 ?   -6.0   7.8         5   1.8e+04      17     145 ..     488     536 ..     466     654 .. 0.49
   3 ?   -0.0   0.3      0.23   8.4e+02      17      53 ..     616     654 ..     594     735 .. 0.58

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.00021
  Kinesin_assoc   3 inedPnaklvrelkeeverlkdlllaqglediidseaeplkeglvll.........................aseraknlsavtaavaglsps.ss 72 
                    inedP + ++re++ee++rlk +l+  g + + +   e+ +++l  +                         +                   +   
     KOO22594.1 366 INEDPKDAMLREFQEEIARLKAALADAGGAPMEEYIDESGQKQLRPVvdkiienvvevekevekiveiekviE------------------VErEV 443
                    9***********************9988755544332222222222222333444433333333332222221..................21112 PP

  Kinesin_assoc  73 lsalss..................rae.svssleerivfspaseeaierlketekiiaelne.tWeeklrkteairlereallaelGvaired 145
                    +++ +                   +++ +v  ++e  v +    e +er+k+      e +  +  e +r+ e+ r    + la++   ir+d
     KOO22594.1 444 EVVREIeverfvevekeverivtvEVDrEVEVIKEVEVEVGVAHEEVERIKQELLTAHESDRaALREEMRRKEEQRDALTQQLADMKTQIRKD 536
                    222222223333333333333322222122222222222233356677776544333444332456777777777777777788887777777 PP

  == domain 2  score: -6.0 bits;  conditional E-value: 5
  Kinesin_assoc  17 eeverlkdlllaqglediidseaeplkeglvllaseraknlsavtaavaglspssslsalssraesvssleerivfspaseeaierlketekiiae 112
                    eever+k+ ll+   +d                                                                               
     KOO22594.1 488 EEVERIKQELLTAHESDRAA---------------------------------------------------------------------------- 507
                    45555544333322222222............................................................................ PP

  Kinesin_assoc 113 lnetWeeklrkteairlereallaelGvaired 145
                          e +r+ e+ r    + la++   ir+d
     KOO22594.1 508 ----LREEMRRKEEQRDALTQQLADMKTQIRKD 536
                    ....12222222222222222222222222222 PP

  == domain 3  score: -0.0 bits;  conditional E-value: 0.23
  Kinesin_assoc  17 eeverlkdll..laqglediidseaeplkeglvllaser 53 
                    +  ++lk+l+  + q+ ++i++ ++e  +e++ +l + r
     KOO22594.1 616 DKTAKLKKLFakFKQAQAEILELQQEYNREKEDILDTIR 654
                    444455555422235555555555444444333332222 PP

>> Corona_S2  Coronavirus S2 glycoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   1.1      0.28     1e+03     471     522 ..     412     467 ..     404     480 .. 0.68
   2 ?    8.9   0.5   0.00013      0.47     470     545 ..     605     685 ..     598     687 .. 0.84

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 0.28
                 XBXSSGGGCCXXXXXXXXXXXXSX...XXXXHHHHTTHH.HHHHHHHHHHHHHHHH CS
   Corona_S2 471 eldtlvpeyidvneelqkllenyk...pnvelpdldkfn.atvlnltseidrlqev 522
                 ++d ++++ ++v++e++k++e  k    + e+  + ++  + ++++++e++r+ +v
  KOO22594.1 412 VVDKIIENVVEVEKEVEKIVEIEKvieVEREVEVVREIEvERFVEVEKEVERIVTV 467
                 56778888888888888888777642233445555444414458888888877665 PP

  == domain 2  score: 8.9 bits;  conditional E-value: 0.00013
                 XXBXSSGGGCCXXXXXXXXXXXXSX.XXXXHHHH.TTHHHHH...HHHHHHHHHHHHHHHHGGGGHHHHHHHTTHHHHHTT CS
   Corona_S2 470 teldtlvpeyidvneelqkllenyk.pnvelpdl.dkfnatv...lnltseidrlqevidnlneslvdleklnrletyikW 545
                  ++++l++e  d   +l+kl+ ++k  + e+ +l +++n      l+    +++ q + + +  s + l++l+++e+   W
  KOO22594.1 605 RQYKSLQEEVEDKTAKLKKLFAKFKqAQAEILELqQEYNREKediLDTIRKLSKQQALKQLIMTSYIPLDQLSKIERCSEW 685
                 6799********************9999******888998762225555555677899999***************98777 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (761 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2393  (0.133471); expected 358.6 (0.02)
Passed bias filter:                      509  (0.0283898); expected 358.6 (0.02)
Passed Vit filter:                        99  (0.00552178); expected 17.9 (0.001)
Passed Fwd filter:                        25  (0.00139439); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 1.05u 0.31s 00:00:01.36 Elapsed: 00:00:00.53
# Mc/sec: 4295.07
//
Query:       KOO22595.1  [L=570]
Description: hypothetical protein Ctob_003354 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (570 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       391  (0.0218082); expected 358.6 (0.02)
Passed bias filter:                      241  (0.0134419); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.52u 0.27s 00:00:00.79 Elapsed: 00:00:00.44
# Mc/sec: 3892.87
//
Query:       KOO22596.1  [L=314]
Description: 3-deoxy-d-manno-octulosonate cytidylyltransferase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.2e-45  154.7   0.0    4.1e-45  154.4   0.0    1.1  1  CTP_transf_3     Cytidylyltransferase
    3.7e-11   43.7   2.1    3.7e-11   43.7   2.1    2.5  2  NTP_transf_3     MobA-like NTP transferase domain
    1.6e-05   24.8   0.8    2.8e-05   24.0   0.8    1.4  1  IspD             2-C-methyl-D-erythritol 4-phosphate cytidyly
  ------ inclusion threshold ------
      0.031   14.1   0.0      0.063   13.1   0.0    1.4  1  Arabinose_Iso_C  L-arabinose isomerase C-terminal domain
      0.049   13.4   0.6       0.17   11.7   0.2    1.8  2  QRPTase_C        Quinolinate phosphoribosyl transferase, C-te


Domain annotation for each model (and alignments):
>> CTP_transf_3  Cytidylyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  154.4   0.0   1.1e-48   4.1e-45       1     221 []       9     262 ..       9     262 .. 0.97

  Alignments for each domain:
  == domain 1  score: 154.4 bits;  conditional E-value: 1.1e-48
                   EEEEEE-SSSSSSTTGGGSE.ETTEEHHHHHHHHHHHTTTTSEEEEEES-HHHHHHHHHTTSEEEE--TTCSSHHHHHHHHHHHHTTT.TTSEEEEE CS
  CTP_transf_3   1 iaIipARsgSkRlpgKnlld.lggkpliayvleaalkskafekvivaTDseeiknvakefgasvlvtrsslesdterflevvkaflmseneeiivnl 96 
                   +++ip+R+gS+RlpgK+ll+ lgg p+ia+v++aal +  +++v vaTD+eei+ +a  +ga+ ++t++ ++++t+r++++++ ++ s  ++i+vn+
    KOO22596.1   9 VVVIPSRFGSSRLPGKPLLRmLGGAPMIAHVVRAALGARSVSRVLVATDHEEIAVAAARAGAETVMTDKAIQTGTDRVAAAMRLTQTS--ADIVVNV 103
                   589**************8763899****************************************************************..99***** PP

                   -TT-TT--HHHHHHHHHHHHHSTTSSEEEEEEETTSHHHHTSTTSTEEEETTT...............SBEEEEESSESSEEHHHHHCTS....... CS
  CTP_transf_3  97 qGdnPllqeevikkaietlkenqedylstlvkkvgkeeevlnandlkvlldda...............gkalyfeesvipyireeplels....... 171
                   qGd+Pl+++e+i+ a++ l+e+++ +++tl +++   +++l+++++kv+ ++                ++al+f++++i  +re +  l        
    KOO22596.1 104 QGDEPLIEPESIDLAVRLLLEQPQADIATLSAPLP-LSALLDPSKVKVVCSSIasgpahepgprtrngANALFFSRAPIGVDRETLRALMqshmgss 199
                   ***********************************.99***********99988*******************************998767****** PP

                   ................TTTSEEEEEEEEEEHHHHHHHHHHSHHHHHSHHHHHT-TTHHHHHTT-EE CS
  CTP_transf_3 172 ................rrlylshagiytfrkeqplkelvidtptseilekiekleqlrvllegkki 221
                                   + +  +h+g y+fr    l ++v+++p+   le +e+leq+r+l+ g++i
    KOO22596.1 200 hradgdaavaamdlplSHACRLHVGLYAFRSA-ALLRFVALPPSH--LERLEQLEQMRALEDGMRI 262
                   ****************99999**********8.************..**************99887 PP

>> NTP_transf_3  MobA-like NTP transferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.7   2.1     1e-14   3.7e-11      10     118 ..      14     130 ..      13     136 .. 0.84
   2 ?    2.9   2.1     0.034   1.2e+02      50     128 ..     129     234 ..     116     299 .. 0.68

  Alignments for each domain:
  == domain 1  score: 43.7 bits;  conditional E-value: 1e-14
                   TTTTT....THHHHCC.CCCCHHHHHHHHHCTT..-CEEEEECSHCHHHHHHTTCTS-EEE-TTSS-SHHHHHHHHHHHH..SSSCEEEEETT-TT- CS
  NTP_transf_3  10 sRmgg....dKallpl.ggkpllervldalraa.gvdevvvvggdeevlaalarlgvrvvededpgkgplaslaaalraaa.dadavlvlacDmPll 99 
                   sR+g+     K+ll++ gg p++++v++a+  a +v++v+v++++ee++ a+ar g+++v  +++ +     +aaa+r  + +ad v+ + +D Pl+
    KOO22596.1  14 SRFGSsrlpGKPLLRMlGGAPMIAHVVRAALGArSVSRVLVATDHEEIAVAAARAGAETVMTDKAIQTGTDRVAAAMRLTQtSADIVVNVQGDEPLI 110
                   67776556568888888**************99569***************************999999999*****9854599************* PP

                   -HHHHHHHHHCH.HHHTSSE CS
  NTP_transf_3 100 tpelverllaaa.aasgadv 118
                   +pe ++  ++ + ++ +ad+
    KOO22596.1 111 EPESIDLAVRLLlEQPQADI 130
                   ****9977776623444455 PP

  == domain 2  score: 2.9 bits;  conditional E-value: 0.034
                   HHHHHHTTCTS-EEE-TTSS-SHHHHHHHHHHHH.......SSSCEEEEETT-TT--HHHHHHHHHCH....HHHTSSEEEEESSSEE......... CS
  NTP_transf_3  50 evlaalarlgvrvvededpgkgplaslaaalraaa......dadavlvlacDmPlltpelverllaaa....aasgadvvvptyeger......... 127
                   +++   a+l+++ + d+ + k   +s+a++ ++ +      +a a+++  + +  +++e++++l++++    +++++d++v++ +            
    KOO22596.1 129 DIATLSAPLPLSALLDPSKVKVVCSSIASGPAHEPgprtrnGANALFFSRAPI-GVDRETLRALMQSHmgssHRADGDAAVAAMDLPLshacrlhvg 224
                   56667788899999999999999999999998855566664555566655555.8999*****9999977663333444444433222233444444 PP

                   .........E CS
  NTP_transf_3 128 .........g 128
                             
    KOO22596.1 225 lyafrsaalL 234
                   4444433333 PP

>> IspD  2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.0   0.8   7.9e-09   2.8e-05      21     128 ..      26     133 ..       8     139 .. 0.88

  Alignments for each domain:
  == domain 1  score: 24.0 bits;  conditional E-value: 7.9e-09
                 GGSEETTEEHHHHHHHHHHCTTTEEEEEEEE-GGGHHHHHHHHGGCCEEEEE--SSHHHHHHHHHHTTSSTTSEEEE--TT-TT--HHHHHHHHHHHHT CS
        IspD  21 qflelkgqtllehtvdallaskavdkivvvvseddteefeqllldksiqlvaGGdeRaesVlnglkalegeakfVLvHDaARpllkaadiaellaaaeq 119
                 +++ l g ++++h v+a+l+ ++v++++v+ +++++  +++  ++++++  +  ++ ++ V ++++  + +a++V+   +  pl++++ i+  +  + +
  KOO22596.1  26 LLRMLGGAPMIAHVVRAALGARSVSRVLVATDHEEIAVAAARAGAETVMTDKAIQTGTDRVAAAMRLTQTSADIVVNVQGDEPLIEPESIDLAVRLLLE 124
                 567899*******************************99999999999999999999999*******9999********************99999988 PP

                 TCSEEEEEE CS
        IspD 120 stqgailal 128
                 + q+ i+ l
  KOO22596.1 125 QPQADIATL 133
                 888888765 PP

>> Arabinose_Iso_C  L-arabinose isomerase C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.0   1.7e-05     0.063      35      84 ..     254     304 ..     249     308 .. 0.87

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 1.7e-05
                      EE-SSSEEEEEEEEEEE--S.S--TT--S-EEEEEESS-HHHHHHHHHHTT CS
  Arabinose_Iso_C  35 vdlgdrfrlivnevevvkpe.eelpkLpvaralwkpkpdlktaaeaWilaG 84 
                        l+d +r++v ev+ v+    ++ +L+  +a w+++ +l+++ ++W++  
       KOO22596.1 254 RALEDGMRIVVGEVDHVSRGvDTVDDLEALEARWRADRGLRESLRTWLTDN 304
                      567899*********99875156799**********************865 PP

>> QRPTase_C  Quinolinate phosphoribosyl transferase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.2   4.7e-05      0.17      64     134 ..      31     105 ..      26     115 .. 0.72
   2 ?   -0.6   0.0      0.28     1e+03      48      76 ..     249     277 ..     243     290 .. 0.81

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 4.7e-05
                 SSHHHHHHHHHHHH.TTTSE.EEEEESSHHHHHHHHHHT-SEEEEES--HHHHHHHHHHHHHHSTT..SEEEEES CS
   QRPTase_C  64 gsiveavksvreav.dkevk.ievevesleeleevleaeadiimLDnfsveelkkaveelkeknkr..vlievSG 134
                 g+   + + vr+a+    v+ + v ++ +e + +++ a+a+ +m D+   + + +++  ++ ++ +  ++++v G
  KOO22596.1  31 GGAPMIAHVVRAALgARSVSrVLVATDHEEIAVAAARAGAETVMTDKAIQTGTDRVAAAMRLTQTSadIVVNVQG 105
                 555556666677773334446**************************9776666665555444433337777776 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 0.28
                 STTTSEEE-HHHHHHHSSHHHHHHHHHHH CS
   QRPTase_C  48 gLsdmvlikdnhiaaagsiveavksvrea 76 
                 +L++m  + d +++++g++ ++ + v+ +
  KOO22596.1 249 QLEQMRALEDGMRIVVGEVDHVSRGVDTV 277
                 58889999999999999998888877765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (314 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       542  (0.0302304); expected 358.6 (0.02)
Passed bias filter:                      373  (0.0208043); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.47u 0.26s 00:00:00.73 Elapsed: 00:00:00.41
# Mc/sec: 2307.17
//
Query:       KOO22597.1  [L=220]
Description: methyltransferase type 11 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.3e-09   37.8   0.0    4.1e-09   37.0   0.0    1.4  1  Methyltransf_11  Methyltransferase domain
    2.9e-06   27.9   0.0    0.00013   22.6   0.0    2.3  1  Methyltransf_25  Methyltransferase domain
     0.0011   18.4   0.0        0.1   11.9   0.0    2.1  2  Ubie_methyltran  ubiE/COQ5 methyltransferase family
     0.0068   16.3   0.0       0.74    9.6   0.0    2.1  2  Methyltransf_8   Hypothetical methyltransferase
  ------ inclusion threshold ------
      0.049   13.4   0.0       0.11   12.3   0.0    1.5  1  Methyltransf_31  Methyltransferase domain


Domain annotation for each model (and alignments):
>> Methyltransf_11  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.0   0.0   1.1e-12   4.1e-09      44      96 .]       7      77 ..       2      77 .. 0.93

  Alignments for each domain:
  == domain 1  score: 37.0 bits;  conditional E-value: 1.1e-12
                     EEEETTEECCCTSS-TT-EEEEEEES-CCC-C..................CHHHHHHHHHHHEEEEEEEEE CS
  Methyltransf_11 44 kvefvvadaeklpfednsfDlvvssevlhhve..................dpekalkeiaRvLkpgGllvi 96
                     +v+f++ad++ lp++d+s+D+vv+ +++ +++                  +++ al+e+ RvL pgGll++
       KOO22597.1  7 SVSFHQADLRALPMADGSVDVVVAGWAISYLKseyeewyadgssggpwrrEVDTALSEMDRVLAPGGLLAV 77
                     5889***************************667899*******************************975 PP

>> Methyltransf_25  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.6   0.0   3.6e-08   0.00013      45      97 .]       5      73 ..       1      73 [. 0.75

  Alignments for each domain:
  == domain 1  score: 22.6 bits;  conditional E-value: 3.6e-08
                     TTTEEEEESBCCGBSSSTTTEEEEEEESTGG................GSSHHHHHHHHHHHHHHEEEEE CS
  Methyltransf_25 45 glnvefvqgdaedlpfedgsfDlvvssgalh................hlsdedlekalkeiarvLkpgG 97
                     +++v+f+q+d+++lp +dgs+D+vv+  a++                  +++++++al+e+ rvL pgG
       KOO22597.1  5 SCSVSFHQADLRALPMADGSVDVVVAGWAISylkseyeewyadgssgGPWRREVDTALSEMDRVLAPGG 73
                     5689**********************5456644455555555555443455666789999999999998 PP

>> Ubie_methyltran  ubiE/COQ5 methyltransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.5   0.0    0.0054        19      96     126 ..       4      34 ..       1      42 [. 0.86
   2 !   11.9   0.0   2.8e-05       0.1     132     154 ..      58      80 ..      55     103 .. 0.88

  Alignments for each domain:
  == domain 1  score: 4.5 bits;  conditional E-value: 0.0054
                      TSSTEEEEE--TTT-TTS-T-EEEEEEES-G CS
  Ubie_methyltran  96 gkinieflqanaeeLpfeddsfDvvtvsfGl 126
                      +  ++ f qa+  +Lp+ d+s Dvv  ++ +
       KOO22597.1   4 ASCSVSFHQADLRALPMADGSVDVVVAGWAI 34 
                      556899*******************999877 PP

  == domain 2  score: 11.9 bits;  conditional E-value: 2.8e-05
                      HHHHHHHHHHHEEEEEEEEEEEE CS
  Ubie_methyltran 132 klkaLkeayrvlkpGGrlvvlef 154
                       ++aL e+ rvl pGG l vle+
       KOO22597.1  58 VDTALSEMDRVLAPGGLLAVLET 80 
                      689*******************8 PP

>> Methyltransf_8  Hypothetical methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.6   0.0   0.00021      0.74     110     128 ..      12      30 ..       4      46 .. 0.82
   2 !    4.7   0.0    0.0067        24     137     159 ..      58      80 ..      54      93 .. 0.86

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 0.00021
                     ES-TTS-S--TT-EEEEEE CS
  Methyltransf_8 110 acdlakvPledesvdvavf 128
                       dl+ +P++d+svdv+v 
      KOO22597.1  12 QADLRALPMADGSVDVVVA 30 
                     689**************96 PP

  == domain 2  score: 4.7 bits;  conditional E-value: 0.0067
                     HHHHHHHHHHHEEEEEEEEEEEE CS
  Methyltransf_8 137 ladflkeanrvlkvGGllkvaev 159
                     + + l e+ rvl +GGll v e 
      KOO22597.1  58 VDTALSEMDRVLAPGGLLAVLET 80 
                     567899*************9885 PP

>> Methyltransf_31  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0     3e-05      0.11      56     111 ..       8      79 ..       4     112 .. 0.74

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 3e-05
  Methyltransf_31  56 veFeqgdieeleklledekfDlilsnevl..........naladpdkile.................eiervlkpggillied 111
                      v+F+q+d  +l+  ++d ++D++++  ++          +                           e+ rvl pgg l++ +
       KOO22597.1   8 VSFHQADLRALP--MADGSVDVVVAGWAIsylkseyeewY---------AdgssggpwrrevdtalsEMDRVLAPGGLLAVLE 79 
                      89**********..66*********966653344444331.........244445555555555556**********998866 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (220 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       262  (0.0146132); expected 358.6 (0.02)
Passed bias filter:                      210  (0.0117129); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.36u 0.23s 00:00:00.59 Elapsed: 00:00:00.36
# Mc/sec: 1807.72
//
Query:       KOO22598.1  [L=424]
Description: hypothetical protein Ctob_003351 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (424 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       407  (0.0227007); expected 358.6 (0.02)
Passed bias filter:                      360  (0.0200792); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.48u 0.25s 00:00:00.73 Elapsed: 00:00:00.41
# Mc/sec: 3074.48
//
Query:       KOO22599.1  [L=248]
Description: methyltransferase type 11 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    6.6e-06   26.8   0.0    1.6e-05   25.5   0.0    1.7  1  Methyltransf_25  Methyltransferase domain
    2.6e-05   23.7   0.0    2.9e-05   23.6   0.0    1.1  1  Spermine_synth   Spermine/spermidine synthase domain
    3.7e-05   23.6   0.0    6.8e-05   22.8   0.0    1.6  2  Methyltransf_30  S-adenosyl-L-methionine-dependent methyltran
      5e-05   23.9   0.0    9.8e-05   22.9   0.0    1.5  1  Methyltransf_11  Methyltransferase domain
    6.2e-05   22.6   0.0    0.00017   21.2   0.0    1.7  1  MTS              Methyltransferase small domain
     0.0041   17.0   0.0      0.024   14.5   0.0    2.0  1  Methyltransf_23  Methyltransferase domain
  ------ inclusion threshold ------
       0.02   15.9   0.0      0.038   15.0   0.0    1.4  1  Methyltransf_24  Methyltransferase domain
       0.24   11.1   0.0       0.37   10.5   0.0    1.2  1  Met_10           Met-10+ like-protein


Domain annotation for each model (and alignments):
>> Methyltransf_25  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.5   0.0     7e-09   1.6e-05       1      97 []      77     186 ..      77     186 .. 0.77

  Alignments for each domain:
  == domain 1  score: 25.5 bits;  conditional E-value: 7e-09
                      EEEET-TTSHHHHHHHCTSTSSEEEEEESSHHHHHHHHHHHHHTTT..........TEEEEESBCCG.BS.SSTTTEEEEEEEST.GGGSSHH. CS
  Methyltransf_25   1 vLdlGcGtGrltlalakrlgkakvtgvDiseemleaareraeeegl..........nvefvqgdaed.lp.fedgsfDlvvssga.lhhlsde. 80 
                      vLd+++G G ++  +a++   ++v+ +++++ m+e  r++  ++ l          +++ + gda++ lp +++g fD+++      + +s e 
       KOO22599.1  77 VLDVCTGLGYTACGAAAEPATEHVVTIELDPLMIEMQRANPWSAALfadsseahsaKITRLLGDATEvLPaLPAGAFDCCIH-DPpTNAMSGEl 169
                      9*************9999549*************9988555442222332333445999999***88577569*********.45466655441 PP

                      HHHHHHHHHHHHEEEEE CS
  Methyltransf_25  81 dlekalkeiarvLkpgG 97 
                        e+++++i+r+L+p+G
       KOO22599.1 170 YSEDFYAQIRRCLRPNG 186
                      5589***********99 PP

>> Spermine_synth  Spermine/spermidine synthase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.6   0.0   1.3e-08   2.9e-05      40     131 ..      95     190 ..      43     244 .. 0.79

  Alignments for each domain:
  == domain 1  score: 23.6 bits;  conditional E-value: 1.3e-08
                     TT-SEEEEEES-HHHHHHHHHHSHHHHTT....CGGCTTEEEEESTCHHHHCTCSS.-EEEEEEECCSTTCSSCGCSSHHHHHHHHHTEEEEEEE CS
  Spermine_synth  40 ntvekitlvdiDqkvidfskkflpslais....afndarvklvlgdgfkflkayek.kfdvvivdsldpvgpaenlFskeffdllkkvlkedGvi 129
                     +  e+++ +++D ++i++ + +  s a        + a+++ +lgd+ ++l a+ +  fd  i d       + +l+s++f+ ++ ++l+++G +
      KOO22599.1  95 PATEHVVTIELDPLMIEMQRANPWSAALFadssEAHSAKITRLLGDATEVLPALPAgAFDCCIHDPPT-NAMSGELYSEDFYAQIRRCLRPNGAL 188
                     45699***************9977777655655567777777**********************9887.5666779**************99865 PP

                     EE CS
  Spermine_synth 130 il 131
                     + 
      KOO22599.1 189 FH 190
                     43 PP

>> Methyltransf_30  S-adenosyl-L-methionine-dependent methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.0   0.1       5.8   1.3e+04     103     115 ..      47      59 ..      46      61 .. 0.85
   2 !   22.8   0.0     3e-08   6.8e-05      28      89 ..     129     191 ..     104     224 .. 0.87

  Alignments for each domain:
  == domain 1  score: -4.0 bits;  conditional E-value: 5.8
                      T-EEEEEE-CTCS CS
  Methyltransf_30 103 GfkvekrkgfgrK 115
                      Gf++++ kg+  K
       KOO22599.1  47 GFNMHSFKGMSSK 59 
                      8999999999877 PP

  == domain 2  score: 22.8 bits;  conditional E-value: 3e-08
                      TTTEEEEEEES-HHHHHHHC-.T-EEEEEE-SS-TTTSGGGCSHHHHHHHHHHEEEEEEEEES CS
  Methyltransf_30  28 aeevtlklligdarealkeld.ekadawFlDgFsPaknPelwseellkelarllkkkgtlaty 89 
                      a++++++ l+gda e+l++l+   +d   +D+   a   el+se++++++ r+l+++g l  y
       KOO22599.1 129 AHSAKITRLLGDATEVLPALPaGAFDCCIHDPPTNAMSGELYSEDFYAQIRRCLRPNGALFHY 191
                      367889999************99***********************************99887 PP

>> Methyltransf_11  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.9   0.0   4.4e-08   9.8e-05       1      95 [.      78     189 ..      78     190 .. 0.86

  Alignments for each domain:
  == domain 1  score: 22.9 bits;  conditional E-value: 4.4e-08
                      EEET-TTSHHHHHHHHTT..SEEEEEES-HHHHHHHHHHCCHHT-..........EEEETTEECCC.TS.S-TT-EEEEEEES-CCC-...CCH CS
  Methyltransf_11   1 LdvGcGtGrlaealakrg..arvvgvDlskemlklakekaseegl..........kvefvvadaek.lp.fednsfDlvvssevlhhv...edp 77 
                      Ldv +G G+ a+  a     ++vv+++l++ m+++ +++   + l          k++ + +da++ lp ++ + fD+++     + +      
       KOO22599.1  78 LDVCTGLGYTACGAAAEPatEHVVTIELDPLMIEMQRANPWSAALfadsseahsaKITRLLGDATEvLPaLPAGAFDCCIHDPPTNAMsgeLYS 171
                      899999*****999944458*************99988888887788888888888888******95576**********98877766555699 PP

                      HHHHHHHHHHEEEEEEEE CS
  Methyltransf_11  78 ekalkeiaRvLkpgGllv 95 
                      e++ ++i+R+L+p+G l+
       KOO22599.1 172 EDFYAQIRRCLRPNGALF 189
                      ***************986 PP

>> MTS  Methyltransferase small domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.2   0.0   7.6e-08   0.00017      27     136 ..      69     189 ..      62     217 .. 0.80

  Alignments for each domain:
  == domain 1  score: 21.2 bits;  conditional E-value: 7.6e-08
                 CHCCTCSEEEEET-TTSHHHHHHHHHTTC.EEEEEESBHHHHHHHHHHHHHTTGC..........EEEE...E-STTTTSTTS-EEEEEE---STTTCH CS
         MTS  27 lpkelsgkvlDlGcGaGvlgaalakespeaevtlvdvdarAlesakenleankle..........vevv...asdvleeveekkfdlivsNPPfhagka 112
                 l ++l+g+vlD+++G G+ ++ +a+e  + +v+ ++ d   +e+ ++n  + +l           ++ +   a++vl +++ + fd+ +  PP  a + 
  KOO22599.1  69 LGSRLRGTVLDVCTGLGYTACGAAAEPATEHVVTIELDPLMIEMQRANPWSAALFadsseahsakITRLlgdATEVLPALPAGAFDCCIHDPPTNAMSG 167
                 6667899******************999999************999985433332234344453333331224566778889***********999988 PP

                 CHHHHHHHHHHHHHHHEEEEEEEE CS
         MTS 113 telavaeeliaeAkeaLkegGeLl 136
                   +   e++ a+ +++L+++G L+
  KOO22599.1 168 --ELYSEDFYAQIRRCLRPNGALF 189
                 ..77899***************97 PP

>> Methyltransf_23  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.5   0.0   1.1e-05     0.024      20     124 ..      71     197 ..      58     247 .. 0.72

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 1.1e-05
  Methyltransf_23  20 lraggrvLdiGcGtGillevlrengf..svtgvDlspeaveiae.....kakkaqkdqfdeqeaae............pqgkfdlIvlrevleh 94 
                       r +g vLd+ +G G+++  ++++++  +v+ ++l+p ++e+ +      a +a ++ +++ +++             p+g fd+ +    ++ 
       KOO22599.1  71 SRLRGTVLDVCTGLGYTACGAAAEPAteHVVTIELDPLMIEMQRanpwsAALFADSSEAHSAKITRllgdatevlpalPAGAFDCCIHDPPTNA 164
                      67899**********98888888877789************99888877444444444444444445555555666667778887776666666 PP

  Methyltransf_23  95 vp...dppellrqiatllkpgGylllseplasl 124
                      +    + +   +qi+++l+p+G l++ + + s+
       KOO22599.1 165 MSgelYSEDFYAQIRRCLRPNGALFHYVGDPSS 197
                      655445678888888888888888776654444 PP

>> Methyltransf_24  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.0   0.0   1.7e-05     0.038      11     101 ..      86     188 ..      80     190 .. 0.70

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 1.7e-05
  Methyltransf_24  11 tlwllralrrngagrlvavdhdpg........aeeaaalare.aglddrvrlikadseealaslaagsiDllfiDgghaa...eavled.leal 91 
                      + ++++a++ + + ++v+++ dp          + aa +a++ +  ++ ++ + +d+ e+l+ l ag +D+ + D + +a   e + ed +  +
       KOO22599.1  86 YTACGAAAEPATE-HVVTIELDPLmiemqranPWSAALFADSsEAHSAKITRLLGDATEVLPALPAGAFDCCIHDPPTNAmsgELYSEDfYAQI 178
                      3444455666665.99999999988887655433344444446788889999***********************8876654444444425777 PP

  Methyltransf_24  92 lprlapggvv 101
                      ++ l+p+g +
       KOO22599.1 179 RRCLRPNGAL 188
                      8888888876 PP

>> Met_10  Met-10+ like-protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.0   0.00017      0.37      97     139 ..      70     112 ..      55     122 .. 0.80

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00017
                 T--TT-EEEETT-TTTCCHHHCCHHTTSSEEEEEES-HHHHHH CS
      Met_10  97 lveegevVvdvfAGiGpfaipiakyskakrvlaidlnPesvky 139
                   +   +V+dv  G G+ a  +a     + v++i+l+P  +++
  KOO22599.1  70 GSRLRGTVLDVCTGLGYTACGAAAEPATEHVVTIELDPLMIEM 112
                 4666679*****************9999**********87775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (248 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       345  (0.0192426); expected 358.6 (0.02)
Passed bias filter:                      331  (0.0184617); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.44u 0.24s 00:00:00.68 Elapsed: 00:00:00.40
# Mc/sec: 1848.05
//
Query:       KOO22600.1  [L=194]
Description: cell surface protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      2e-09   37.0   0.1    6.2e-06   26.0   0.0    3.5  3  NHL        NHL repeat
     0.0094   15.2   0.0      0.013   14.7   0.0    1.2  1  TolB_like  TolB-like 6-blade propeller-like
  ------ inclusion threshold ------
      0.026   13.7   0.1       0.04   13.1   0.1    1.2  1  DUF5128    6-bladed beta-propeller


Domain annotation for each model (and alignments):
>> NHL  NHL repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.0   0.0     1e-09   6.2e-06       3      28 .]      19      43 ..      17      43 .. 0.94
   2 !    4.6   0.0    0.0065        39       1      19 [.      64      81 ..      64      87 .. 0.81
   3 ?    2.4   0.0     0.031   1.9e+02      16      27 ..     131     144 ..     126     145 .. 0.89

  Alignments for each domain:
  == domain 1  score: 26.0 bits;  conditional E-value: 1e-09
                SEEEEEEETTTEEEEEECCCTEEEEE CS
         NHL  3 yPhGvavdsnGdiyVaDsenhrvqvF 28
                yP G+av +++++yVa+++nhr+ vF
  KOO22600.1 19 YPCGIAV-KGDEVYVAEFGNHRISVF 43
                788****.*****************9 PP

  == domain 2  score: 4.6 bits;  conditional E-value: 0.0065
                BSSEEEEEEETTTEEEEEE CS
         NHL  1 fnyPhGvavdsnGdiyVaD 19
                f++P+G+a +  G ++V++
  KOO22600.1 64 FYQPRGLAFV-KGWLLVTE 81
                89*******6.77777775 PP

  == domain 3  score: 2.4 bits;  conditional E-value: 0.031
                 EEEE..CCCTEEEE CS
         NHL  16 yVaD..senhrvqv 27 
                 yV+D   ++ r++v
  KOO22600.1 131 YVTDirAGHARIFV 144
                 9****9*****998 PP

>> TolB_like  TolB-like 6-blade propeller-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   0.0   2.2e-06     0.013      18      89 ..      17      87 ..       9     102 .. 0.88

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 2.2e-06
   TolB_like 18 mryPfrikvkddilvilDlhgddffyaysypelqfvssfakrGrgpeemlsaeefriskdslwvldksklta 89
                ++yP  i+vk+d +++  + + + ++++  +  +f + ++ +G+gp+ +  +  + + k  l v +  ++t+
  KOO22600.1 17 LEYPCGIAVKGDEVYVAEFGNHR-ISVFNHKTREFQRCLGSEGKGPGQFYQPRGLAFVKGWLLVTEAKRVTV 87
                78***************997777.9****************************9999999888888776665 PP

>> DUF5128  6-bladed beta-propeller
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.1   6.7e-06      0.04      57     102 ..      22      68 ..      12      74 .. 0.87

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 6.7e-06
     DUF5128  57 kikvvdkrifvlDsaknnlfvFd.kkGkfvrkIgaqGeGPgEYlqin 102
                  i v  + ++v +  + ++ vF+ k+ +f r  g++G+GPg + q  
  KOO22600.1  22 GIAVKGDEVYVAEFGNHRISVFNhKTREFQRCLGSEGKGPGQFYQPR 68 
                 577888999**9999999*****9999****************9975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (194 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       385  (0.0214736); expected 358.6 (0.02)
Passed bias filter:                      282  (0.0157287); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.40u 0.25s 00:00:00.65 Elapsed: 00:00:00.40
# Mc/sec: 1437.56
//
Query:       KOO22601.1  [L=436]
Description: hypothetical protein Ctob_005604 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
  ------ inclusion threshold ------
      0.074   12.7   0.0       0.54    9.9   0.0    2.4  2  PreAtp-grasp  Pre ATP-grasp domain


Domain annotation for each model (and alignments):
>> PreAtp-grasp  Pre ATP-grasp domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.0     0.071   1.3e+03      50     101 ..     132     180 ..     127     187 .. 0.79
   2 ?    9.9   0.0     3e-05      0.54      32      66 ..     250     286 ..     219     333 .. 0.80

  Alignments for each domain:
  == domain 1  score: -1.0 bits;  conditional E-value: 0.071
  PreAtp-grasp  50 eeeFlrYvtaltgvdreslrvlvppagrlgsdlLsperlldpelverlraav 101
                    ++F++Y++a++ + +++l  +    g + +  L++  +++ +l++rl++a 
    KOO22601.1 132 AKSFAHYAAATVAFISDKLVHF---GGCEFQLHLNAGAAAHTSLLRRLHEAS 180
                   5789999999999999998887...677777778888888888888888765 PP

  == domain 2  score: 9.9 bits;  conditional E-value: 3e-05
  PreAtp-grasp  32 RlvWfardG..DvlvlpvapeeeFlrYvtaltgvdre 66 
                    + W+a+dG  D l+ ++ p +++++Yvt+    d++
    KOO22601.1 250 LTWWLAEDGadDCLLNCALPVPKLRQYVTDRAYHDPN 286
                   468*****999******************98777766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (436 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       292  (0.0162865); expected 358.6 (0.02)
Passed bias filter:                      245  (0.013665); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.21s 00:00:00.69 Elapsed: 00:00:00.38
# Mc/sec: 3402.22
//
Query:       KOO22602.1  [L=432]
Description: hypothetical protein Ctob_005603 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    4.9e-12   46.1   0.0    4.9e-12   46.1   0.0    2.8  2  PWWP          PWWP domain
    5.6e-11   42.7   0.8    5.6e-11   42.7   0.8    2.9  3  HMG_box       HMG (high mobility group) box
    9.2e-05   23.0   1.4    9.2e-05   23.0   1.4    2.9  3  HMG_box_2     HMG-box domain
  ------ inclusion threshold ------
       0.08   12.0   6.4      0.097   11.7   6.4    1.1  1  BAF1_ABF1     BAF1 / ABF1 chromatin reorganising factor
          2    8.5  19.8       0.42   10.7   4.7    2.4  2  RNA_polI_A34  DNA-directed RNA polymerase I subunit RPA34.5


Domain annotation for each model (and alignments):
>> PWWP  PWWP domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.1   0.0   1.4e-15   4.9e-12       1      93 [.      35     121 ..      35     124 .. 0.84
   2 ?   -9.4   9.8         5   1.8e+04      76      76 ..     278     278 ..     188     351 .. 0.67

  Alignments for each domain:
  == domain 1  score: 46.1 bits;  conditional E-value: 1.4e-15
                 SSTTEEEEEEESSSEEEEEEEEECCCCCCCCHCT---SSSEEEEEETTTTEE.EEE-.GGGEEE-SHHHHHHHHHTTSS-HHHHHHHHHHHHHHH CS
        PWWP   1 fqpgdlvwakvkgypwWPavvidpeevpekvlkkkekskelylVkFfgdkey.awvk.ekdlkpfteedeeeylkkkkkkkskkkfkkAleeaee 93 
                 ++ +dlvwak++g+pwWPa+v   + +  +  +        y+V+Ff++ e+  + + ++ l p++  ++     k k+k+ ++kf+ Al+e  +
  KOO22602.1  35 YEQNDLVWAKIRGFPWWPARVAGTRRTDAEGVR--------YPVRFFHTAERiELSPmPSTLPPYSSREDLADPTKIKSKTMRTKFELALRELSK 121
                 5779*******************9877766553........**********9755542555******99999999999999999******99876 PP

  == domain 2  score: -9.4 bits;  conditional E-value: 5
                 S CS
        PWWP  76 k 76 
                 +
  KOO22602.1 278 R 278
                 0 PP

>> HMG_box  HMG (high mobility group) box
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.8       2.7   9.7e+03      58      58 ..     225     225 ..     202     243 .. 0.59
   2 ?   -4.4   4.3         5   1.8e+04      45      65 ..     297     317 ..     290     333 .. 0.74
   3 !   42.7   0.8   1.6e-14   5.6e-11      10      65 ..     346     401 ..     343     403 .. 0.95

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 2.7
                 H CS
     HMG_box  58 k 58 
                 k
  KOO22602.1 225 K 225
                 1 PP

  == domain 2  score: -4.4 bits;  conditional E-value: 5
                 HHHHHHHHHHHHHHHHHHHHH CS
     HMG_box  45 eeKkkYeekaekekaryekek 65 
                 ++K+ + + a+k+k+   +++
  KOO22602.1 297 AAKAAFSKVAAKAKEAAARAR 317
                 667777777777777666654 PP

  == domain 3  score: 42.7 bits;  conditional E-value: 1.6e-14
                 HHHHHHHHHHHHHSTTS-HHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHH CS
     HMG_box  10 lfskeqraklkaenPelknaeiskklgekWkalseeeKkkYeekaekekaryekek 65 
                 ++ +++r kl a +P+l   +i+ ++ ++Wk l+e++K++Y+e a+++k+rye+e 
  KOO22602.1 346 FYTEAERLKLTAAHPGLDAPAIAEMIKAQWKVLEEADKAPYKELAAADKQRYEAEC 401
                 688999***********************************************986 PP

>> HMG_box_2  HMG-box domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.5   3.5         5   1.8e+04      45      62 ..     247     264 ..     214     269 .. 0.56
   2 ?   -1.4   1.1       1.1   3.8e+03      56      70 ..     314     328 ..     290     336 .. 0.70
   3 !   23.0   1.4   2.6e-08   9.2e-05       5      69 ..     338     401 ..     333     404 .. 0.76

  Alignments for each domain:
  == domain 1  score: -4.5 bits;  conditional E-value: 5
                 HS-HHHHHHHHHHHHHHH CS
   HMG_box_2  45 alseeeKekYeekAkedk 62 
                 a  +e K + ee+A++ +
  KOO22602.1 247 ATTAEAKAAAEEEARAAR 264
                 334455666677777766 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 1.1
                 HHHHHHHHHHHH-SS CS
   HMG_box_2  56 ekAkedkkrydreal 70 
                  +A+e k+++ +e +
  KOO22602.1 314 ARAREAKAKAAEETK 328
                 456666666665554 PP

  == domain 3  score: 23.0 bits;  conditional E-value: 2.6e-08
                 -SS--HHHHHHHTTHHHHHHH..T---SSHHHHTGGGHHHHHHS-HHHHHHHHHHHHHHHHHHHH-S CS
   HMG_box_2   5 kaarnAYalfvqemipelkrk..GnpviglaevsklcsekWkalseeeKekYeekAkedkkrydrea 69 
                 + a+ A  ++   ++ +l +   G + + +ae++k    +Wk l+e++K +Y+e A +dk+ry++e 
  KOO22602.1 338 RVAKAAAQFYTEAERLKLTAAhpGLDAPAIAEMIK---AQWKVLEEADKAPYKELAAADKQRYEAEC 401
                 55666666777777777777744555666666655...69***********************9985 PP

>> BAF1_ABF1  BAF1 / ABF1 chromatin reorganising factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   6.4   2.7e-05     0.097      96     225 ..     215     339 ..     103     348 .. 0.73

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 2.7e-05
   BAF1_ABF1  96 tdkenkkekteeseeatkasaeaeteslkkdeseenketqkkkeadaadedddvsaaiaaAVaavadsknakeekkeekakkeedaeentnknenndas 194
                  ++  + +  +e+e+a ka++ a  +s+  ++ +++ e++   e++a +++ +v+a  aaA aa ad++ a+++ +e+++++ + +   ++ + + +  
  KOO22602.1 215 AKARAEARAAKEEEKAVKAEVRAAKASER-AAAATTAEAKAAAEEEARAARLEVKACRAAALAARADTSGAEAAVAEAREEAIAAKAAFSKVAAKAK-- 310
                 23333333344444444444444333333.3334455566666667788999****************99999988777766555544444444443.. PP

   BAF1_ABF1 195 isqkknslsedaledsqrsqssketvrGPFv 225
                   +  +  +e++ +  +++++++e  rGP v
  KOO22602.1 311 --EAAARAREAKAKAAEETKKKREAERGPRV 339
                 ..45555666666777778888888888855 PP

>> RNA_polI_A34  DNA-directed RNA polymerase I subunit RPA34.5
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   4.7   0.00012      0.42     114     194 ..     164     255 ..     162     268 .. 0.58
   2 ?    3.2   7.3     0.022        79     128     181 ..     281     335 ..     271     360 .. 0.48

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00012
                   XXXXXXXXXXXXXXX............XXXXX...........XXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXXXXXX..XXXXXX. CS
  RNA_polI_A34 114 mRFkPfGsgdgppgtigssseesegekekkkk...........pkakkkekkkkkkkaaeedeeeeapkkkkkkkkkkkekkeeekkeekee 194
                    R+ P+G g+++p     + +++++e+ +              p+a k +++k++++a   +eee+a k +    k +++++ + ++e k++
    KOO22602.1 164 TRWLPAGDGENEPPLFHVDHDDGDEEDLEEYEvidafelykttPEATKLAQAKARAEARAAKEEEKAVKAEVRAAKASERAAAATTAEAKAA 255
                   59********8888777777774443333333688899999997777777777777776666434443333333333333333332222222 PP

  == domain 2  score: 3.2 bits;  conditional E-value: 0.022
                   X............XXXXXXXXXXXXXXXXXXXXXXXX..XXXXXXXXXXXXXXXX CS
  RNA_polI_A34 128 tigssseesegekekkkkpkakkkekkkkkkkaaeede.eeeapkkkkkkkkkkk 181
                   t+g + +  e ++e  ++++a +k  +k+k+ aa  +e +++a ++ kkk++ ++
    KOO22602.1 281 TSGAEAAVAEAREEAIAAKAAFSKVAAKAKEAAARAREaKAKAAEETKKKREAER 335
                   4455555555555555443333333333333333333122222222222222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (432 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1871  (0.104356); expected 358.6 (0.02)
Passed bias filter:                      513  (0.0286129); expected 358.6 (0.02)
Passed Vit filter:                       105  (0.00585643); expected 17.9 (0.001)
Passed Fwd filter:                        27  (0.00150594); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.82u 0.32s 00:00:01.13 Elapsed: 00:00:00.48
# Mc/sec: 2709.58
//
Query:       KOO22603.1  [L=576]
Description: gamma-butyrobetaine hydroxylase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    7.2e-30  104.7   0.0    1.3e-29  103.8   0.0    1.4  1  TauD      Taurine catabolism dioxygenase TauD, TfdA family


Domain annotation for each model (and alignments):
>> TauD  Taurine catabolism dioxygenase TauD, TfdA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  103.8   0.0   7.4e-34   1.3e-29      27     254 ..       9     224 ..       1     228 [. 0.86

  Alignments for each domain:
  == domain 1  score: 103.8 bits;  conditional E-value: 7.4e-34
        TauD  27 keelrellaeygvvvfrgfplspeqqlefarrfGplygtpgrgtntkygevldvssvyesadianlayttllwHtDlsylesppgiqlLhcleapatGG 125
                 + +l+ + ++yg + + g   ++ ++ e+++ fG ++ t+       yg+ +dv+++++ a+ a+ a   +  HtD++y++ +p +qlL+c+e++  GG
  KOO22603.1   9 ASWLDGM-RRYGCAKLSGGRAEAGALFEVIELFGYVRETN-------YGRHFDVKTKPNPANLADSALGLQA-HTDNPYRDPAPTVQLLYCIENSCDGG 98 
                 4555555.79999999998889999999999999888888.......*********8888888887777777.************************** PP

        TauD 126 etpfvDgraaynaLpeelpellegltavrvyyhyrggglrteqelpavdkhprtghpvvrthpvltgrkallvnppfatrieglgt...peskelldal 221
                 e+++vDg+aa+ +L++e+p  +  l+  ++ + y++        ++  +   ++++p++    + t++   ++n    +++ g++       +++++++
  KOO22603.1  99 ENTLVDGFAAAVRLRREDPNGFGLLAGFPACFAYEQ-----NAASDYTRASLHSRKPMIALAVDGTVESISFNN-RSIAPLSGVPYehmIAYYDAYKRF 191
                 ************************************.....8999999999************98888888888.555555444442226888999999 PP

        TauD 222 eelledpeftyrfqwqeGdlvifdNrrvlHgrt 254
                 ++++ dp  t++f++++G+  ++dNrrvlHg +
  KOO22603.1 192 ARIIDDPTMTVSFKLKPGEAFLVDNRRVLHGDK 224
                 999999************************965 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (576 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       300  (0.0167327); expected 358.6 (0.02)
Passed bias filter:                      277  (0.0154498); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.51u 0.27s 00:00:00.78 Elapsed: 00:00:00.43
# Mc/sec: 4026.26
//
Query:       KOO22604.1  [L=321]
Description: hypothetical protein Ctob_005601 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (321 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       727  (0.0405488); expected 358.6 (0.02)
Passed bias filter:                      456  (0.0254337); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.46u 0.21s 00:00:00.67 Elapsed: 00:00:00.39
# Mc/sec: 2483.71
//
Query:       KOO22605.1  [L=560]
Description: tripeptidyl-peptidase 1 precursor [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.9e-29  102.8   0.0    3.3e-29  102.0   0.0    1.4  1  Pro-kuma_activ  Pro-kumamolisin, activation domain
      8e-06   25.3   0.4    1.3e-05   24.7   0.4    1.2  1  Peptidase_S8    Subtilase family


Domain annotation for each model (and alignments):
>> Pro-kuma_activ  Pro-kumamolisin, activation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  102.0   0.0   3.7e-33   3.3e-29       2     140 ..      29     170 ..      28     172 .. 0.93

  Alignments for each domain:
  == domain 1  score: 102.0 bits;  conditional E-value: 3.7e-33
  Pro-kuma_activ   2 gwtkrgraasstllpvrigLkqnnlekledflmdvsdpkspnygkhltaeevaelfapseeaidaVrnwLes.sgiaasrhsdtkgwiafsatva 95 
                     gw+  g+ +++  +++++++kq+nl++l+d l  vsdpksp+yg+hl++e v++l++ps+e+i++V +++   +g++ +  s+++++i++ +t++
      KOO22605.1  29 GWSVIGESPKDARIELNFAVKQRNLQSLHDTLLSVSDPKSPSYGEHLSNEAVHALIKPSDEDIATVHSFINTvAGVEPRAASPNSDFITAVMTIG 123
                     89999999**************************************************************75489******************** PP

  Pro-kuma_activ  96 qverllktsfeaYshkkgss..slarcdeyslPealknyvdyihptd 140
                     q+e ll++++e  +h + +   ++a  ++y+lPe+++  vd++ pt 
      KOO22605.1 124 QAEALLGAKYEVLRHGRAGVqvHRASRSGYRLPESVAAAVDFVSPTV 170
                     **************986666336777778****************96 PP

>> Peptidase_S8  Subtilase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.7   0.4   1.4e-09   1.3e-05     122     263 ..     323     490 ..     262     500 .. 0.78

  Alignments for each domain:
  == domain 1  score: 24.7 bits;  conditional E-value: 1.4e-09
                   -SEEEE-EESCETTCHHCHHHHHH..HHHHHH.CCT-EEEEE--SS-T-HHEEE-TTCEECTTTSTTCEEEEEES...................... CS
                   xxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...................... RF
  Peptidase_S8 122 vdvinmslgestslpktgrsieal..ainravnkkgvlvviSaGNngktgsslqagspvgtpstsknvitvgayt...................... 194
                   + + + s+ge+    ++    + l  ++ +a   +g+ +  ++G +g + +  +     +tps+s  v++vg++                       
    KOO22605.1 323 PLIFSTSYGEDEASWSYAAADR-LnvEFAKAG-TRGISLLYASGDEGANCE--KGKYVPETPSSSPYVTAVGGTGpttgypkpgfeegiglssggfs 415
                   3388999995554444444433.347555666.57************6666..66777788************************************ PP

                   ..................TTSSB-TT--B-TT.......-EEEE-S-CCCCCCCCCHHHTTTHHEEEE-SHHHCHHHHHHHHHHHHH CS
                   ..................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Peptidase_S8 195 ..................tegkiapfSsrGpssdgklkpdivapGgnivstwsrqsnnsaglssyqsmsGTSmAsPnaagaaAllls 263
                                     t++++ p  s G ++ g++ pdi+a ++     ++  +           + GTS AsP aag++All +
    KOO22605.1 416 nywpmpewqrgavtkylaTAEHL-PEKSVGYNTSGRAYPDIAAQATG--FCVTPFG---------CGVAGTSCASPTAAGVFALLND 490
                   *****************655554.55569999999999********9..5566666.........3479***************976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (560 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       263  (0.014669); expected 358.6 (0.02)
Passed bias filter:                      239  (0.0133304); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.52u 0.25s 00:00:00.77 Elapsed: 00:00:00.41
# Mc/sec: 4131.06
//
Query:       KOO22606.1  [L=559]
Description: ABC transporter family protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.1e-29  102.8   0.0    5.4e-14   52.9   0.0    2.6  2  ABC_tran      ABC transporter
    1.1e-21   77.9   6.8    1.2e-07   31.9   0.4    4.2  4  AAA_21        AAA domain, putative AbiEii toxin, Type IV TA s
    8.3e-09   35.2   3.1     0.0069   15.8   0.4    3.9  3  SMC_N         RecF/RecN/SMC N terminal domain
    9.2e-07   28.5   0.1      0.024   14.4   0.0    2.7  2  AAA_29        P-loop containing region of AAA domain
    6.6e-06   25.8   2.7      0.018   14.6   0.1    3.3  3  AAA_25        AAA domain
    6.7e-06   26.7   0.5      0.085   13.3   0.0    2.4  2  AAA_23        AAA domain
    2.6e-05   24.7   0.2       0.75   10.2   0.0    3.4  3  AAA           ATPase family associated with various cellular 
    3.2e-05   23.7   0.1       0.29   10.9   0.0    2.8  2  PduV-EutP     Ethanolamine utilisation - propanediol utilisat
    5.2e-05   21.0   2.7      0.022   12.3   0.2    2.1  2  DUF3584       Protein of unknown function (DUF3584)
    7.3e-05   22.6   0.1       0.23   11.2   0.0    2.4  2  AAA_24        AAA domain
     0.0001   22.1   0.8       0.15   11.7   0.0    3.0  3  AAA_30        AAA domain
    0.00011   22.1   0.1       0.22   11.4   0.0    2.4  2  RsgA_GTPase   RsgA GTPase
    0.00013   21.5   0.1       0.09   12.2   0.0    2.3  2  Arf           ADP-ribosylation factor family
    0.00031   21.0   2.3       0.38   11.0   0.0    2.9  3  AAA_28        AAA domain
    0.00036   19.9   0.2        0.7    9.1   0.1    2.2  2  Zeta_toxin    Zeta toxin
    0.00037   20.3   7.4        1.8    8.3   0.3    4.3  4  IstB_IS21     IstB-like ATP binding protein
    0.00051   20.2   0.3        1.1    9.4   0.0    2.5  2  AAA_33        AAA domain
    0.00058   19.7   0.9       0.95    9.1   0.0    3.1  4  AAA_15        AAA ATPase domain
    0.00079   19.1   2.0       0.48   10.0   0.1    2.3  2  SRP54         SRP54-type protein, GTPase domain
     0.0022   18.0   0.2          5    7.2   0.0    3.3  4  AAA_14        AAA domain
     0.0028   17.7   0.3        3.3    7.8   0.0    2.4  2  MMR_HSR1      50S ribosome-binding GTPase
     0.0029   16.5   0.3       0.58    8.9   0.0    2.3  2  DLIC          Dynein light intermediate chain (DLIC)
     0.0037   17.6   7.0       0.56   10.6   2.1    3.2  2  AAA_16        AAA ATPase domain
      0.004   15.9   0.1        1.7    7.2   0.0    2.1  2  AAA_13        AAA domain
     0.0049   17.1   0.1        3.9    7.7   0.0    2.4  2  Roc           Ras of Complex, Roc, domain of DAPkinase
      0.005   16.8   2.7          9    6.3   0.0    4.0  4  AAA_5         AAA domain (dynein-related subfamily)
     0.0052   16.8   0.1        1.8    8.6   0.0    2.3  2  TsaE          Threonylcarbamoyl adenosine biosynthesis protei
     0.0061   17.1   0.5        1.4    9.4   0.0    2.6  2  AAA_18        AAA domain
     0.0061   16.6   0.0        2.1    8.3   0.0    2.2  2  DUF615        Protein of unknown function (DUF615)
  ------ inclusion threshold ------
      0.012   15.9  10.5          2    8.7   0.0    4.0  3  AAA_22        AAA domain
      0.015   14.9   0.2        2.7    7.5   0.0    2.3  2  AAA_27        AAA domain
      0.017   14.4   0.1        2.4    7.3   0.0    2.2  2  Septin        Septin
      0.021   14.4   0.2        6.2    6.3   0.1    2.3  2  AAA_7         P-loop containing dynein motor region
      0.028   14.0   2.6        4.2    6.9   0.5    2.4  2  cobW          CobW/HypB/UreG, nucleotide-binding domain
      0.031   14.8   0.0         10    6.7   0.0    2.3  2  EF-hand_like  Phosphoinositide-specific phospholipase C, efha
      0.044   13.2   3.3        6.5    6.1   0.1    3.7  4  TniB          Bacterial TniB protein
       0.12   12.1   0.0         11    5.7   0.0    2.3  2  ATP-synt_ab   ATP synthase alpha/beta family, nucleotide-bind
       0.19   12.1   0.2         16    5.9   0.0    2.4  2  RNA_helicase  RNA helicase
        0.2   11.4   0.3        8.4    6.1   0.1    2.2  2  MukB          MukB N-terminal
       0.26   11.0   0.6         19    5.0   0.0    2.9  2  RuvB_N        Holliday junction DNA helicase RuvB P-loop doma
       0.38   10.6   1.3         31    4.5   0.1    2.4  2  MobB          Molybdopterin guanine dinucleotide synthesis pr
        6.6    6.6  14.2        1.5    8.7   0.4    3.2  2  NACHT         NACHT domain


Domain annotation for each model (and alignments):
>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.3   0.0   6.5e-15   2.8e-12       7     136 ..       2     140 ..       1     141 [. 0.67
   2 !   52.9   0.0   1.3e-16   5.4e-14       1     136 [.     249     404 ..     249     405 .. 0.67

  Alignments for each domain:
  == domain 1  score: 47.3 bits;  conditional E-value: 6.5e-15
                 EEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGG..............B-HHHCCHCEEEE-SS--S-TTSBHHHH............ CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..............xxxxxxxxxxxxxxxxxxxxxxxxxxxx............ RF
    ABC_tran   7 klkegekvaivGenGaGKStLlkllagllkpteGeilldgkdlke..............qeleslrkeigvlpqepqlfpeltvren............ 79 
                 +l  g +  +vG nGaGK+tL++++ g++  +e  +++ g++  e                     + +++  +            n            
  KOO22606.1   2 ELPTGCRCMLVGANGAGKTTLMSVIGGKHLCKESAVRVLGRSAFEdttlsadlalltgnW-----THTVAFAGH------------Nvpyqamevsqli 83 
                 67889999****************************999888777455553444222221.....222222222............2222233333444 PP

                 ......HHHTCHHHHHHHSTTGGTTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTT CS
                 ......xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  80 ......esdeeiekalsklglkelkdtvvksspssLSgGqkqrvalarallkkpkllllDEpt 136
                        + +++e++++ lg +     +     +++S Gq++rv++ + l+k  k+lllDE t
  KOO22606.1  84 rsnsagVDPARVERLVTLLGVER--SWN----LTTVSDGQRRRVQILCKLMKPFKILLLDEIT 140
                 44444455555666666666555..333....489**************************88 PP

  == domain 2  score: 52.9 bits;  conditional E-value: 1.3e-16
                 EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGG.........B-HHHCCHCEEEE-SS--S-TTSBHHHH........... CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.........xxxxxxxxxxxxxxxxxxxxxxxxxxxx........... RF
    ABC_tran   1 lknvslklkegekvaivGenGaGKStLlkllagllkpteGeilldgkdlke.........qeleslrkeigvlpqepqlfpeltvren........... 79 
                 l+n+s+++ +g +  +vG nGaGK+tLl+ll g++    +++++ g +  +              + ++++++                          
  KOO22606.1 249 LDNLSFEVPRGARCLLVGANGAGKTTLLRLLGGKSMVPVDSVQCLGYNAFHdielntmisMLSGDWTRQVACVGN------------Gvpfqadfsigy 335
                 79****************************************888666666333333333233344444444444............233434454553 PP

                 ..............HHHTCHHHHHHHSTTGG...TTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTT CS
                 ..............xxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  80 ..............esdeeiekalsklglke...lkdtvvksspssLSgGqkqrvalarallkkpkllllDEpt 136
                               +     ++ l + +l+    l d  ++ + +++S Gq++r +l   ll+ ++lll+DE t
  KOO22606.1 336 maeefakalirdghY-----TETLVRARLHRlvtLLDMDLEWRLHQVSDGQRRRAQLLLKLLRPSQLLLMDEVT 404
                 355567666544431.....222222222222224444444455****************************98 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.2   0.0   0.00014     0.059       4      19 ..      11      26 ..      10      63 .. 0.91
   2 !   16.9   0.0     1e-05    0.0044     232     297 ..     108     171 ..      88     172 .. 0.88
   3 !   16.6   0.0   1.2e-05    0.0052       3      19 ..     263     279 ..     263     300 .. 0.91
   4 !   31.9   0.4   2.7e-10   1.2e-07     210     297 ..     366     435 ..     326     438 .. 0.78

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 0.00014
      AAA_21  4 liGpNgsGKSnLLdal 19
                l+G+Ng+GK++L+  +
  KOO22606.1 11 LVGANGAGKTTLMSVI 26
                9************988 PP

  == domain 2  score: 16.9 bits;  conditional E-value: 1e-05
      AAA_21 232 lparelSdGtkrllalltallralkkg.sllliDEpEngLHPkllrrllellkelsr.ngaQviltTH 297
                 ++++ +SdG++r     + +l  l k+ ++ll+DE+ + L+  +   ll +l+e+s+ +g+ ++  TH
  KOO22606.1 108 WNLTTVSDGQRRR----VQILCKLMKPfKILLLDEITTDLDLLARQDLLNFLREESEeRGVSIVYCTH 171
                 6778899999999....66666666777************************8888889********* PP

  == domain 3  score: 16.6 bits;  conditional E-value: 1.2e-05
      AAA_21   3 vliGpNgsGKSnLLdal 19 
                 +l+G+Ng+GK++LL++l
  KOO22606.1 263 LLVGANGAGKTTLLRLL 279
                 59*************99 PP

  == domain 4  score: 31.9 bits;  conditional E-value: 2.7e-10
      AAA_21 210 asvderlrergvvflengdgqelparelSdGtkrllalltallralkkgsllliDEpEngLHPkllrrllell.kelsrngaQviltTH 297
                                  + + e+ ++++SdG++r + ll+ llr      lll DE+ + L+      ll++l +e+ ++ga vi +TH
  KOO22606.1 366 L----------------DMDLEWRLHQVSDGQRRRAQLLLKLLRPS---QLLLMDEVTTDLDVVSRQALLQFLrEECDERGATVIYSTH 435
                 3................34567888******************988...99**********************999999********** PP

>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.4   1.6e-05    0.0069      28     190 ..      10     162 ..       4     172 .. 0.74
   2 ?    4.0   0.0     0.068        29      28      41 ..     263     276 ..     253     284 .. 0.87
   3 !   12.2   0.0   0.00021     0.091     153     189 ..     389     425 ..     346     437 .. 0.82

  Alignments for each domain:
  == domain 1  score: 15.8 bits;  conditional E-value: 1.6e-05
                 EEEESTTSSHHHHHHHHHHHCTT.TTTTTTCHCCCCCC--BTTCSSTTEEEEEEEEEETTEESSSSSSCEEEEEEEETTSEEEEEETTEEE-HHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N  28 aivGpNGSGKsnlldAilFvLGersakklrseklsdlihkskekasvkkaeveitfdnedkklkiekeevsisrrvkrkgeseykingkevtkkevsel 126
                 ++vG+NG+GK+ l+  i    G    k+l +e++ +++ +s+ ++ + +a+++++  n  +++    ++v  +  +++  +  ++ n   v  + v++l
  KOO22606.1  10 MLVGANGAGKTTLMSVI----G---GKHLCKESAVRVLGRSAFEDTTLSADLALLTGNWTHTVAFAGHNVPYQ--AMEVSQ-LIRSNSAGVDPARVERL 98 
                 78************988....7...68999999999999999999999******9999999854444444333..333322.34444444555555555 PP

                 HHCTT-STT....CS-HHHHHHHHHHHHHHHHCCS--SEEEECTTTTTS-HHHHHHHHHHHHHHCTTS CS
                 xxxxxxxxx....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N 127 lesagiske....lLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvkkvaellkekskna 190
                 +   g++++    + S G++  v +  l   + +kp  + llDei   LD   ++ + ++l+e+s++ 
  KOO22606.1  99 VTLLGVERSwnltTVSDGQRRRVQI--L--CKLMKPFKILLLDEITTDLDLLARQDLLNFLREESEER 162
                 55444444333339*****986654..3..5779****************************999875 PP

  == domain 2  score: 4.0 bits;  conditional E-value: 0.068
                 EEEESTTSSHHHHH CS
                 xxxxxxxxxxxxxx RF
       SMC_N  28 aivGpNGSGKsnll 41 
                  +vG+NG+GK+ ll
  KOO22606.1 263 LLVGANGAGKTTLL 276
                 58*********986 PP

  == domain 3  score: 12.2 bits;  conditional E-value: 0.00021
                 HHCCS--SEEEECTTTTTS-HHHHHHHHHHHHHHCTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N 153 iqkvkpaplyllDeidaaLDeknvkkvaellkekskn 189
                 ++  +p+ l l+De+   LD   ++++ ++l+e+ ++
  KOO22606.1 389 LKLLRPSQLLLMDEVTTDLDVVSRQALLQFLREECDE 425
                 45689***************************98766 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.3   0.0   0.00052      0.22      23      39 ..       6      23 ..       1      26 [. 0.84
   2 !   14.4   0.0   5.7e-05     0.024      16      39 ..     253     276 ..     247     283 .. 0.82

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00052
      AAA_29 23 g.atlltGpsGsGKSTll 39
                g  ++l+G++G+GK+Tl+
  KOO22606.1  6 GcRCMLVGANGAGKTTLM 23
                55689************8 PP

  == domain 2  score: 14.4 bits;  conditional E-value: 5.7e-05
      AAA_29  16 tieidlkg.atlltGpsGsGKSTll 39 
                 ++e+  +g  +ll+G++G+GK+Tll
  KOO22606.1 253 SFEVP-RGaRCLLVGANGAGKTTLL 276
                 55665.56699*************8 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.9   0.1    0.0024         1      30      52 ..       3      25 ..       2      40 .. 0.89
   2 !   14.6   0.1   4.3e-05     0.018       9      50 ..     236     276 ..     228     282 .. 0.77
   3 ?    0.3   0.1       1.1   4.6e+02      86     108 ..     370     392 ..     308     436 .. 0.58

  Alignments for each domain:
  == domain 1  score: 8.9 bits;  conditional E-value: 0.0024
      AAA_25 30 lpagelallaGapgtGKttlald 52
                lp g  ++l+Ga g+GKttl + 
  KOO22606.1  3 LPTGCRCMLVGANGAGKTTLMSV 25
                5888899************9875 PP

  == domain 2  score: 14.6 bits;  conditional E-value: 4.3e-05
      AAA_25   9 avsvadlaapppprrwlvkgllpagelallaGapgtGKttla 50 
                 +++++    +p++++ l  ++ p+g+ +ll+Ga g+GKttl+
  KOO22606.1 236 NLTWRYKPGQPAQLDNLSFEV-PRGARCLLVGANGAGKTTLL 276
                 555555566777777777788.******************97 PP

  == domain 3  score: 0.3 bits;  conditional E-value: 1.1
      AAA_25  86 lrrRlravgealrddarllvldl 108
                 l++Rl++v   +r++a+ll+  l
  KOO22606.1 370 LEWRLHQVSDGQRRRAQLLLKLL 392
                 34444444444444444433332 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.1   0.2   0.00097      0.42      24      38 ..      11      25 ..       9      27 .. 0.86
   2 !   13.3   0.0    0.0002     0.085      23      38 ..     263     278 ..     251     280 .. 0.91

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00097
      AAA_23 24 ItGpNGaGKTTildA 38
                ++G NGaGKTT++  
  KOO22606.1 11 LVGANGAGKTTLMSV 25
                79**********965 PP

  == domain 2  score: 13.3 bits;  conditional E-value: 0.0002
      AAA_23  23 lItGpNGaGKTTildA 38 
                 l++G NGaGKTT+l+ 
  KOO22606.1 263 LLVGANGAGKTTLLRL 278
                 799**********975 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.2   0.0    0.0018      0.75       2      67 ..      10     139 ..       9     179 .. 0.62
   2 !    9.9   0.0    0.0022      0.94       2      29 ..     263     290 ..     262     329 .. 0.72
   3 ?   -1.1   0.0       5.6   2.4e+03      60     115 ..     396     440 ..     335     442 .. 0.60

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.0018
                 EEESSTTSSHHHHHHHHHHH..HTHEEEEEETTTCSSS............................................................. CS
         AAA   2 llyGppGtGKTllakavake..lgvefleisgsellsk............................................................. 37 
                 +l+G  G GKT+l++ +  +  ++ + +++ g + +++                                                             
  KOO22606.1  10 MLVGANGAGKTTLMSVIGGKhlCKESAVRVLGRSAFEDttlsadlalltgnwthtvafaghnvpyqamevsqlirsnsagvdparverlvtllgversw 108
                 79**************99996535555555555555334555555555555555555555555555555555555677777777777777777777777 PP

                 ...STTHHHHHHHHHHHHHHHTSTS.EEEEEETG CS
         AAA  38 ...yvgesekkirelfkeakekakp.silfiDEi 67 
                    +v++++++  +++ +   + kp +il++DEi
  KOO22606.1 109 nltTVSDGQRRRVQILCK--LM-KPfKILLLDEI 139
                 655455544444444432..23.36688888887 PP

  == domain 2  score: 9.9 bits;  conditional E-value: 0.0022
                 EEESSTTSSHHHHHHHHHHHHTHEEEEE CS
         AAA   2 llyGppGtGKTllakavakelgveflei 29 
                 ll+G  G GKT+l + +  ++ v++ ++
  KOO22606.1 263 LLVGANGAGKTTLLRLLGGKSMVPVDSV 290
                 9****************99975553333 PP

  == domain 3  score: -1.1 bits;  conditional E-value: 5.6
                 EEEEEETGGGHHHHHTTCCCHHHHHHHHHHHHHHHHTTTSSSTEEEEEEESSGGGS CS
         AAA  60 silfiDEidalaksrsgseseeeervvnqLlteldgvkkkeskvivigatnrpdkl 115
                   l++DE+                   ++Ll++l ++ ++ +  +vi  t+  d l
  KOO22606.1 396 QLLLMDEVTTDLDVV----------SRQALLQFLREECDE-RGATVIYSTHILDGL 440
                 566666664332222..........223444444444443.225666666666655 PP

>> PduV-EutP  Ethanolamine utilisation - propanediol utilisation
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.9   0.0   0.00068      0.29       3      27 ..       8      32 ..       7      49 .. 0.87
   2 !    9.7   0.0    0.0016      0.67       3      26 ..     261     284 ..     259     304 .. 0.88

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00068
   PduV-EutP  3 killiGkvgsGKttLtqalkgeelk 27
                + +l+G+ g+GKttL+  + g++l 
  KOO22606.1  8 RCMLVGANGAGKTTLMSVIGGKHLC 32
                68***************99999875 PP

  == domain 2  score: 9.7 bits;  conditional E-value: 0.0016
   PduV-EutP   3 killiGkvgsGKttLtqalkgeel 26 
                 + ll+G+ g+GKttL + l g+++
  KOO22606.1 261 RCLLVGANGAGKTTLLRLLGGKSM 284
                 689**************9999877 PP

>> DUF3584  Protein of unknown function (DUF3584)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.9   0.2   0.00054      0.23      20      37 ..       9      26 ..       1      27 [. 0.85
   2 !   12.3   0.2   5.1e-05     0.022      20      37 ..     262     279 ..     255     280 .. 0.88

  Alignments for each domain:
  == domain 1  score: 8.9 bits;  conditional E-value: 0.00054
     DUF3584 20 tnieGtNaaGKTtLlrLi 37
                  ++G+N+aGKTtL+++i
  KOO22606.1  9 CMLVGANGAGKTTLMSVI 26
                6789***********987 PP

  == domain 2  score: 12.3 bits;  conditional E-value: 5.1e-05
     DUF3584  20 tnieGtNaaGKTtLlrLi 37 
                   ++G+N+aGKTtLlrL+
  KOO22606.1 262 CLLVGANGAGKTTLLRLL 279
                 6789*************7 PP

>> AAA_24  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.1   0.0    0.0023      0.97       3      24 ..       7      28 ..       5      47 .. 0.86
   2 !   11.2   0.0   0.00054      0.23       2      25 ..     259     283 ..     258     315 .. 0.80

  Alignments for each domain:
  == domain 1  score: 9.1 bits;  conditional E-value: 0.0023
      AAA_24  3 lkiliyGpsgiGKTtlakelgp 24
                 +++++G +g+GKTtl++ +g 
  KOO22606.1  7 CRCMLVGANGAGKTTLMSVIGG 28
                689*************997754 PP

  == domain 2  score: 11.2 bits;  conditional E-value: 0.00054
      AAA_24   2 klkiliyGpsgiGKTtlakel.gpk 25 
                 ++++l++G +g+GKTtl++ l g++
  KOO22606.1 259 GARCLLVGANGAGKTTLLRLLgGKS 283
                 689***************9994443 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.7   0.0   0.00036      0.15      22      66 ..      10      54 ..       5     158 .. 0.74
   2 !    7.3   0.0    0.0084       3.6      21      38 ..     262     279 ..     243     285 .. 0.87
   3 ?   -1.1   0.0       3.1   1.3e+03      81     112 ..     378     419 ..     332     432 .. 0.59

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.00036
      AAA_30 22 vltGpAGtGKttalkalreaweaaggrviglAptgkaAkvLaeel 66
                +l+G+ G+GKtt+++++   +  ++  v +l  ++    +L+++l
  KOO22606.1 10 MLVGANGAGKTTLMSVIGGKHLCKESAVRVLGRSAFEDTTLSADL 54
                799**************5554444455666655555555555444 PP

  == domain 2  score: 7.3 bits;  conditional E-value: 0.0084
      AAA_30  21 avltGpAGtGKttalkal 38 
                 ++l+G+ G+GKtt+l+ l
  KOO22606.1 262 CLLVGANGAGKTTLLRLL 279
                 689************975 PP

  == domain 3  score: -1.1 bits;  conditional E-value: 3.1
      AAA_30  81 k.........grarlepgtllivDEagm.vdtkqlaallkaa 112
                             + l+p++ll+ DE+   +d  + +all+ +
  KOO22606.1 378 SdgqrrraqlLLKLLRPSQLLLMDEVTTdLDVVSRQALLQFL 419
                 144444445422356788999999986423444444444333 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.1   0.0    0.0052       2.2     102     130 ..       9      37 ..       2      61 .. 0.79
   2 !   11.4   0.0    0.0005      0.22      87     129 ..     246     289 ..     233     294 .. 0.80

  Alignments for each domain:
  == domain 1  score: 8.1 bits;  conditional E-value: 0.0052
                  EEEECSTTSSHHHHHHHHCTT-----S-- CS
  RsgA_GTPase 102 svlvGqSGvGKStLinallpelelktgev 130
                  ++lvG  G+GK+tL+ ++ +++  k ++v
   KOO22606.1   9 CMLVGANGAGKTTLMSVIGGKHLCKESAV 37 
                  689*************9998866665555 PP

  == domain 2  score: 11.4 bits;  conditional E-value: 0.0005
                  HTTHHHHHHHCTT.SEEEEECSTTSSHHHHHHHHCTT-----S- CS
  RsgA_GTPase  87 kegleelkellkd.ktsvlvGqSGvGKStLinallpelelktge 129
                   ++l++l+ ++     ++lvG  G+GK+tL+  l ++  + + +
   KOO22606.1 246 PAQLDNLSFEVPRgARCLLVGANGAGKTTLLRLLGGKSMVPVDS 289
                  567778887776658899**************999987766665 PP

>> Arf  ADP-ribosylation factor family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.8   0.0    0.0099       4.2      15      34 ..       7      26 ..       2      37 .. 0.84
   2 !   12.2   0.0   0.00021      0.09      12      39 ..     257     284 ..     248     304 .. 0.84

  Alignments for each domain:
  == domain 1  score: 6.8 bits;  conditional E-value: 0.0099
                EEEEEEESTTSSHHHHHHHH CS
         Arf 15 lrilllGLDnaGKtTilkkl 34
                +r++l+G  +aGKtT++  +
  KOO22606.1  7 CRCMLVGANGAGKTTLMSVI 26
                69**************9765 PP

  == domain 2  score: 12.2 bits;  conditional E-value: 0.00021
                 TTEEEEEEEESTTSSHHHHHHHHHHSSC CS
         Arf  12 kkelrilllGLDnaGKtTilkklkleel 39 
                  + +r+ll+G  +aGKtT+l  l  +++
  KOO22606.1 257 PRGARCLLVGANGAGKTTLLRLLGGKSM 284
                 5779****************98877665 PP

>> AAA_28  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.8   0.1    0.0041       1.8       2      20 ..       9      27 ..       8      68 .. 0.76
   2 !   11.0   0.0    0.0009      0.38       2      20 ..     262     280 ..     261     299 .. 0.85
   3 ?   -1.7   0.0         7     3e+03     112     128 ..     363     383 ..     333     431 .. 0.56

  Alignments for each domain:
  == domain 1  score: 8.8 bits;  conditional E-value: 0.0041
      AAA_28  2 ivitGgestGKTtlleaLa 20
                 +++G+ ++GKTtl++ + 
  KOO22606.1  9 CMLVGANGAGKTTLMSVIG 27
                679***********98665 PP

  == domain 2  score: 11.0 bits;  conditional E-value: 0.0009
      AAA_28   2 ivitGgestGKTtlleaLa 20 
                   ++G+ ++GKTtll+ L 
  KOO22606.1 262 CLLVGANGAGKTTLLRLLG 280
                 6799************997 PP

  == domain 3  score: -1.7 bits;  conditional E-value: 7
      AAA_28 112 vfllppapei....dddgeRr 128
                 v ll+ + e+    ++dg+Rr
  KOO22606.1 363 VTLLDMDLEWrlhqVSDGQRR 383
                 333333333323333333332 PP

>> Zeta_toxin  Zeta toxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.1   0.1    0.0016       0.7      20      49 ..      10      39 ..       7      42 .. 0.90
   2 !    8.5   0.0    0.0025       1.1      19      37 ..     262     280 ..     249     290 .. 0.85

  Alignments for each domain:
  == domain 1  score: 9.1 bits;  conditional E-value: 0.0016
  Zeta_toxin 20 llgGqpGAGKselaellkdelerqgnvvrl 49
                +l+G+ GAGK++l++ +  ++  ++++vr+
  KOO22606.1 10 MLVGANGAGKTTLMSVIGGKHLCKESAVRV 39
                799**************9999989999887 PP

  == domain 2  score: 8.5 bits;  conditional E-value: 0.0025
  Zeta_toxin  19 illgGqpGAGKselaellk 37 
                  ll+G+ GAGK++l++ll 
  KOO22606.1 262 CLLVGANGAGKTTLLRLLG 280
                 699************9875 PP

>> IstB_IS21  IstB-like ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.3   0.3     0.068        29      50      78 ..       9      37 ..       5      45 .. 0.82
   2 ?    3.6   0.0      0.11        49      88     145 ..     109     166 ..      83     182 .. 0.76
   3 ?    4.9   0.0     0.044        19      37      70 ..     248     282 ..     236     291 .. 0.80
   4 !    8.3   0.3    0.0042       1.8      91     151 ..     376     437 ..     293     447 .. 0.66

  Alignments for each domain:
  == domain 1  score: 4.3 bits;  conditional E-value: 0.068
   IstB_IS21 50 ivllGpsGvGKshlaialgveavraglsv 78
                ++l+G  G+GK+ l   +g +   ++ +v
  KOO22606.1  9 CMLVGANGAGKTTLMSVIGGKHLCKESAV 37
                789***********999998766555555 PP

  == domain 2  score: 3.6 bits;  conditional E-value: 0.11
   IstB_IS21  88 eelkrarrdgklaralkrllkv.dllilDdlgllpldqaeaellfeviekryerrsiii 145
                 +   + +++ +  ++l +l+k+ ++l+lD++  ++ld  ++++l++ + +  e r + i
  KOO22606.1 109 NLTTVSDGQRRRVQILCKLMKPfKILLLDEIT-TDLDLLARQDLLNFLREESEERGVSI 166
                 55555666667777788888876*******97.589**********9999998887654 PP

  == domain 3  score: 4.9 bits;  conditional E-value: 0.044
   IstB_IS21  37 eLatlsf.iekkenivllGpsGvGKshlaialgve 70 
                 +L +lsf + + + ++l+G  G+GK+ l   lg +
  KOO22606.1 248 QLDNLSFeVPRGARCLLVGANGAGKTTLLRLLGGK 282
                 566666656788999***********998777765 PP

  == domain 4  score: 8.3 bits;  conditional E-value: 0.0042
   IstB_IS21  91 krarrdgklaralkrllkv.dllilDdlgllpldqaeaellfeviekry.errsiiitsnlpf 151
                 ++ +++ + a+ l +ll++ +ll++D++  ++ld  +++ l++ + +   er +++i s   +
  KOO22606.1 376 QVSDGQRRRAQLLLKLLRPsQLLLMDEVT-TDLDVVSRQALLQFLREECdERGATVIYSTHIL 437
                 23345555666677777766999999996.689**********99776527889999887655 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.5   0.1     0.005       2.1       3      17 ..      10      24 ..       9      55 .. 0.84
   2 !    9.4   0.0    0.0027       1.1       3      19 ..     263     279 ..     262     307 .. 0.88

  Alignments for each domain:
  == domain 1  score: 8.5 bits;  conditional E-value: 0.005
      AAA_33  3 llvGlpGsGKstlae 17
                +lvG++G+GK+tl  
  KOO22606.1 10 MLVGANGAGKTTLMS 24
                89**********975 PP

  == domain 2  score: 9.4 bits;  conditional E-value: 0.0027
      AAA_33   3 llvGlpGsGKstlaerl 19 
                 llvG++G+GK+tl++ l
  KOO22606.1 263 LLVGANGAGKTTLLRLL 279
                 79***********9865 PP

>> AAA_15  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.5   0.3     0.014       5.8      27      43 ..      10      26 ..       9      28 .. 0.91
   2 ?   -2.8   0.0       9.4     4e+03     296     364 ..     112     171 ..      97     171 .. 0.69
   3 !    9.1   0.0    0.0022      0.95      27      43 ..     263     279 ..     252     307 .. 0.93
   4 ?   -0.3   0.0       1.6   6.7e+02     288     364 ..     368     435 ..     329     435 .. 0.75

  Alignments for each domain:
  == domain 1  score: 6.5 bits;  conditional E-value: 0.014
      AAA_15 27 vliGkNnsGKSsileal 43
                 l+G+N++GK++++ ++
  KOO22606.1 10 MLVGANGAGKTTLMSVI 26
                59***********9987 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 9.4
      AAA_15 296 knGsGvqrllllillileaekkdekeeknvilliEEPEahLHpqaqkvlikllkelandnktQviitTH 364
                  +++G++r + ++ ++ +  k         ill++E+ + L   a + l + l+e +++    ++++TH
  KOO22606.1 112 TVSDGQRRRVQILCKLMKPFK---------ILLLDEITTDLDLLARQDLLNFLREESEERGVSIVYCTH 171
                 566666666666655544443.........577777777777777777777777777777777778877 PP

  == domain 3  score: 9.1 bits;  conditional E-value: 0.0022
      AAA_15  27 vliGkNnsGKSsileal 43 
                 +l+G+N++GK+++l++l
  KOO22606.1 263 LLVGANGAGKTTLLRLL 279
                 79************988 PP

  == domain 4  score: -0.3 bits;  conditional E-value: 1.6
      AAA_15 288 ddeelplnknGsGvqrllllillileaekkdekeeknvilliEEPEahLHpqaqkvlikllkelandnktQviitTH 364
                  d e  l+++++G++r   l+l++l+ ++          ll++E  + L     + l + l+e  ++    vi++TH
  KOO22606.1 368 MDLEWRLHQVSDGQRRRAQLLLKLLRPSQL---------LLMDEVTTDLDVVSRQALLQFLREECDERGATVIYSTH 435
                 56788899**********999999987776.........77777777777777777777777777777667777777 PP

>> SRP54  SRP54-type protein, GTPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.0   0.1    0.0011      0.48       4      20 ..       9      25 ..       7      43 .. 0.83
   2 !    8.3   0.2    0.0037       1.6       4      19 ..     262     277 ..     260     286 .. 0.86

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.0011
                EEEEESTTSSHHHHHHH CS
       SRP54  4 illvGlqGaGKTttlaK 20
                ++lvG +GaGKTt ++ 
  KOO22606.1  9 CMLVGANGAGKTTLMSV 25
                69***********9875 PP

  == domain 2  score: 8.3 bits;  conditional E-value: 0.0037
                 EEEEESTTSSHHHHHH CS
       SRP54   4 illvGlqGaGKTttla 19 
                 +llvG +GaGKTt l 
  KOO22606.1 262 CLLVGANGAGKTTLLR 277
                 69***********875 PP

>> AAA_14  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.5   0.0     0.019       8.2       6      34 ..      10      37 ..       8      58 .. 0.81
   2 ?   -2.0   0.0       7.8   3.3e+03      65      75 ..     131     141 ..     112     167 .. 0.71
   3 ?    7.2   0.0     0.012         5       6      34 ..     263     293 ..     259     311 .. 0.77
   4 ?   -1.3   0.0       4.9   2.1e+03      53      76 ..     385     406 ..     354     434 .. 0.64

  Alignments for each domain:
  == domain 1  score: 6.5 bits;  conditional E-value: 0.019
      AAA_14  6 vitGaRrvGKTtllkqlikellvkkesil 34
                +++Ga  +GKTtl+  +  ++l  kes +
  KOO22606.1 10 MLVGANGAGKTTLMSVIGGKHL-CKESAV 37
                689************9999999.555555 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 7.8
      AAA_14  65 ktylflDEiqe 75 
                  ++l+lDEi  
  KOO22606.1 131 FKILLLDEITT 141
                 46799999975 PP

  == domain 3  score: 7.2 bits;  conditional E-value: 0.012
      AAA_14   6 vitGaRrvGKTtllkqlikell..vkkesil 34 
                 +++Ga  +GKTtll+ l  +++  v++ ++l
  KOO22606.1 263 LLVGANGAGKTTLLRLLGGKSMvpVDSVQCL 293
                 789************9999888555555544 PP

  == domain 4  score: -1.3 bits;  conditional E-value: 4.9
      AAA_14  53 lelileklkeekktylflDEiqev 76 
                  +l+l++l++   ++l++DE+   
  KOO22606.1 385 AQLLLKLLRP--SQLLLMDEVTTD 406
                 4566665544..678999999865 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.8   0.0    0.0077       3.3       1      22 [.       8      29 ..       8      69 .. 0.81
   2 !    7.7   0.0    0.0083       3.5       2      22 ..     262     282 ..     261     292 .. 0.82

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 0.0077
                EEEEEESTTSSHHHHHHHHHTS CS
    MMR_HSR1  1 evaivGrpNvGKStLinaltge 22
                ++++vG   +GK+tL++ + g+
  KOO22606.1  8 RCMLVGANGAGKTTLMSVIGGK 29
                579*************998775 PP

  == domain 2  score: 7.7 bits;  conditional E-value: 0.0083
                 EEEEESTTSSHHHHHHHHHTS CS
    MMR_HSR1   2 vaivGrpNvGKStLinaltge 22 
                 +++vG   +GK+tL++ l g+
  KOO22606.1 262 CLLVGANGAGKTTLLRLLGGK 282
                 789************999776 PP

>> DLIC  Dynein light intermediate chain (DLIC)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.9   0.0    0.0014      0.58      21      48 ..       2      29 ..       1      40 [. 0.87
   2 ?    5.3   0.0     0.018       7.5      22      47 ..     256     281 ..     251     289 .. 0.87

  Alignments for each domain:
  == domain 1  score: 8.9 bits;  conditional E-value: 0.0014
        DLIC 21 klPsgksvlvlGedgsGkttliaklqGv 48
                 lP+g   +++G +g+Gkttl++ + G 
  KOO22606.1  2 ELPTGCRCMLVGANGAGKTTLMSVIGGK 29
                59********************998774 PP

  == domain 2  score: 5.3 bits;  conditional E-value: 0.018
        DLIC  22 lPsgksvlvlGedgsGkttliaklqG 47 
                 +P g   l++G +g+Gkttl+  l G
  KOO22606.1 256 VPRGARCLLVGANGAGKTTLLRLLGG 281
                 7999999*************987766 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.2   0.2    0.0072       3.1      25      51 ..       7      34 ..       3     167 .. 0.77
   2 !   10.6   2.1    0.0013      0.56      21      45 ..     258     280 ..     245     432 .. 0.62

  Alignments for each domain:
  == domain 1  score: 8.2 bits;  conditional E-value: 0.0072
      AAA_16 25 elvllsGesGvGKsslvrell.ralekd 51
                + ++l+G+ G GK++l+  +  ++l+k+
  KOO22606.1  7 CRCMLVGANGAGKTTLMSVIGgKHLCKE 34
                5688************988875677777 PP

  == domain 2  score: 10.6 bits;  conditional E-value: 0.0013
      AAA_16  21 sgrpelvllsGesGvGKsslvrell 45 
                 +g    +ll+G+ G GK++l+r l 
  KOO22606.1 258 RG--ARCLLVGANGAGKTTLLRLLG 280
                 44..4689*************9886 PP

>> AAA_13  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.6   0.0     0.006       2.5      20      36 ..      10      26 ..       4      46 .. 0.84
   2 !    7.2   0.0    0.0041       1.7      21      37 ..     264     280 ..     259     291 .. 0.86

  Alignments for each domain:
  == domain 1  score: 6.6 bits;  conditional E-value: 0.006
      AAA_13 20 liYGwNGaGKTtLSrll 36
                ++ G+NGaGKTtL +++
  KOO22606.1 10 MLVGANGAGKTTLMSVI 26
                567**********8887 PP

  == domain 2  score: 7.2 bits;  conditional E-value: 0.0041
      AAA_13  21 iYGwNGaGKTtLSrllr 37 
                 + G+NGaGKTtL rll 
  KOO22606.1 264 LVGANGAGKTTLLRLLG 280
                 569*********99985 PP

>> Roc  Ras of Complex, Roc, domain of DAPkinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.7   0.0    0.0091       3.9       2      23 ..       9      30 ..       8      53 .. 0.80
   2 ?    7.0   0.0     0.015       6.5       2      22 ..     262     282 ..     261     308 .. 0.78

  Alignments for each domain:
  == domain 1  score: 7.7 bits;  conditional E-value: 0.0091
                EEEESSTTSSHHHHHHCHCT-C CS
         Roc  2 vvlvGdsgvGKtsllkrfvedk 23
                 +lvG +g+GKt+l++ +  ++
  KOO22606.1  9 CMLVGANGAGKTTLMSVIGGKH 30
                69************98766555 PP

  == domain 2  score: 7.0 bits;  conditional E-value: 0.015
                 EEEESSTTSSHHHHHHCHCT- CS
         Roc   2 vvlvGdsgvGKtsllkrfved 22 
                  +lvG +g+GKt+ll+ +  +
  KOO22606.1 262 CLLVGANGAGKTTLLRLLGGK 282
                 589***********9876555 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.7   0.0     0.065        28       3      19 ..      10      26 ..       8      62 .. 0.78
   2 ?    1.5   0.0      0.63   2.7e+02      43      75 ..     106     140 ..      98     161 .. 0.83
   3 ?    6.3   0.0     0.021         9       3      19 ..     263     279 ..     261     302 .. 0.87
   4 ?    1.0   0.1       0.9   3.8e+02      16      77 ..     337     405 ..     335     422 .. 0.67

  Alignments for each domain:
  == domain 1  score: 4.7 bits;  conditional E-value: 0.065
                EEE--SSSSHHHHHHHG CS
       AAA_5  3 lLvGppGtgKselaerl 19
                +LvG+ G gK++l+  +
  KOO22606.1 10 MLVGANGAGKTTLMSVI 26
                8************9776 PP

  == domain 2  score: 1.5 bits;  conditional E-value: 0.63
                 --B--...........--------G-SEEEEESGG CS
       AAA_5  43 grreik..ngttslvdsplvraaregeilvlDEve 75 
                  +++++  +++++++ ++l + ++  +il+lDE++
  KOO22606.1 106 RSWNLTtvSDGQRRRVQILCKLMKPFKILLLDEIT 140
                 567777777788888899999*************8 PP

  == domain 3  score: 6.3 bits;  conditional E-value: 0.021
                 EEE--SSSSHHHHHHHG CS
       AAA_5   3 lLvGppGtgKselaerl 19 
                 lLvG+ G gK++l + l
  KOO22606.1 263 LLVGANGAGKTTLLRLL 279
                 8************9987 PP

  == domain 4  score: 1.0 bits;  conditional E-value: 0.9
                 HHHGGGGB......S--EEEEE--TT--HHHHH--B--...........--------G-SEEEEESGGG- CS
       AAA_5  16 aerlaaal......nreveyvqltrdtteedlkgrreik..ngttslvdsplvraaregeilvlDEvera 77 
                 ae++a+al      + +++   l+r  t  d+  ++++   +++++++ + l +  r +++l++DEv+  
  KOO22606.1 337 AEEFAKALirdghyTETLVRARLHRLVTLLDMDLEWRLHqvSDGQRRRAQLLLKLLRPSQLLLMDEVT-T 405
                 556666666644444444444555656655666666666678888888899999999*********98.3 PP

>> TsaE  Threonylcarbamoyl adenosine biosynthesis protein TsaE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.8   0.1     0.031        13      22      40 ..       9      27 ..       2      38 .. 0.81
   2 !    8.6   0.0    0.0041       1.8      19      43 ..     259     283 ..     245     303 .. 0.76

  Alignments for each domain:
  == domain 1  score: 5.8 bits;  conditional E-value: 0.031
                EEEEESTTSSHHHHHHHHH CS
        TsaE 22 ilLeGdLGaGKTtlvrgla 40
                 +L G  GaGKTtl+  + 
  KOO22606.1  9 CMLVGANGAGKTTLMSVIG 27
                6899**********98765 PP

  == domain 2  score: 8.6 bits;  conditional E-value: 0.0041
                 TEEEEEEESTTSSHHHHHHHHHHHT CS
        TsaE  19 gdvilLeGdLGaGKTtlvrglakal 43 
                 g+  lL G  GaGKTtl r l  + 
  KOO22606.1 259 GARCLLVGANGAGKTTLLRLLGGKS 283
                 45589*************9887655 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.1   0.1     0.074        32       2      18 ..      10      26 ..      10      64 .. 0.76
   2 !    9.4   0.0    0.0033       1.4       2      31 ..     263     300 ..     263     319 .. 0.67

  Alignments for each domain:
  == domain 1  score: 5.1 bits;  conditional E-value: 0.074
      AAA_18  2 lltGtpGvGKttlakeL 18
                +l G+ G+GKttl   +
  KOO22606.1 10 MLVGANGAGKTTLMSVI 26
                589**********9887 PP

  == domain 2  score: 9.4 bits;  conditional E-value: 0.0033
      AAA_18   2 lltGtpGvGKttlakeLskrlgf.........gvnlrdv 31 
                 ll G+ G+GKttl + L  +  +         g+n  + 
  KOO22606.1 263 LLVGANGAGKTTLLRLLGGK-SMvpvdsvqclGYNAFHD 300
                 589**************554.233545555555555555 PP

>> DUF615  Protein of unknown function (DUF615)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.9   0.0     0.026        11      49      84 ..     110     145 ..     101     176 .. 0.78
   2 !    8.3   0.0     0.005       2.1      48      89 ..     373     414 ..     364     424 .. 0.85

  Alignments for each domain:
  == domain 1  score: 5.9 bits;  conditional E-value: 0.026
      DUF615  49 ikshrearrRqlqyigkllReadveairaalealkn 84 
                 ++++++++rR +q + kl++  ++  +++  ++l+ 
  KOO22606.1 110 LTTVSDGQRRRVQILCKLMKPFKILLLDEITTDLDL 145
                 677889**************9988777777666554 PP

  == domain 2  score: 8.3 bits;  conditional E-value: 0.005
      DUF615  48 rikshrearrRqlqyigkllReadveairaalealknkseee 89 
                 r++++++++rR  q + kllR  ++  ++++ ++l+  s+++
  KOO22606.1 373 RLHQVSDGQRRRAQLLLKLLRPSQLLLMDEVTTDLDVVSRQA 414
                 6778889*******************9999998887766665 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.7   1.8     0.019       8.3       9     127 ..      10     168 ..       7     172 .. 0.55
   2 ?    8.7   0.0    0.0047         2       9      25 ..     263     279 ..     258     302 .. 0.90
   3 ?    2.1   0.4      0.51   2.2e+02      71     126 ..     373     431 ..     335     436 .. 0.71

  Alignments for each domain:
  == domain 1  score: 6.7 bits;  conditional E-value: 0.019
      AAA_22   9 vvtGesGtGKTtllrrlleqldeeakaee......erpevvfvtlpsst.sskdllrellralglelka.............................. 70 
                 +++G  G+GKTtl+  +  ++   ++a +       ++++++ +l+ +t +++               +                              
  KOO22606.1  10 MLVGANGAGKTTLMSVIGGKHLCKESAVRvlgrsaFEDTTLSADLALLTgNWTH--------------Tvafaghnvpyqamevsqlirsnsagvdpar 94 
                 78999********99988888643333334444443333333333333322222..............2223444444444446666666666666666 PP

      AAA_22  71 ..............erlsseellealeqalrarav.ielliiDEaqh.lr...seealeeLrsllnlsrkgvqliL 127
                               +  + ++  ++  q l + ++  ++l++DE+   l+   ++++l++Lr+ ++  + gv++++
  KOO22606.1  95 verlvtllgverswNLTTVSDGQRRRVQILCKLMKpFKILLLDEITTdLDllaRQDLLNFLREESE--ERGVSIVY 168
                 666666666666654444444443333333333334668888888777767666888888887777..77777765 PP

  == domain 2  score: 8.7 bits;  conditional E-value: 0.0047
      AAA_22   9 vvtGesGtGKTtllrrl 25 
                 +++G  G+GKTtllr l
  KOO22606.1 263 LLVGANGAGKTTLLRLL 279
                 799***********987 PP

  == domain 3  score: 2.1 bits;  conditional E-value: 0.51
      AAA_22  71 erlsseellealeqalrarav.ielliiDEaqh.lr...seealeeLrsllnlsrkgvqli 126
                 + ++ ++  ++ +q l +  +  +ll+ DE+   l+   ++++l++Lr+  +  + g ++i
  KOO22606.1 373 RLHQVSDGQRRRAQLLLKLLRpSQLLLMDEVTTdLDvvsRQALLQFLREECD--ERGATVI 431
                 444555555555555555555678*******999988855999999998888..7776666 PP

>> AAA_27  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.0   0.1     0.037        16      30      46 ..      10      26 ..       6      28 .. 0.88
   2 ?    7.5   0.0    0.0063       2.7      19      44 ..     252     277 ..     247     281 .. 0.84

  Alignments for each domain:
  == domain 1  score: 5.0 bits;  conditional E-value: 0.037
      AAA_27 30 liyGpNEAGKstalrAi 46
                +++G+N AGK+t+++ i
  KOO22606.1 10 MLVGANGAGKTTLMSVI 26
                789*********99865 PP

  == domain 2  score: 7.5 bits;  conditional E-value: 0.0063
      AAA_27  19 ldfsaeeadlhliyGpNEAGKstalr 44 
                 l+f+  +    l++G+N AGK+t+lr
  KOO22606.1 252 LSFEVPRGARCLLVGANGAGKTTLLR 277
                 677777777789***********997 PP

>> Septin  Septin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.3   0.0    0.0057       2.4       7      34 ..       9      36 ..       5      63 .. 0.79
   2 ?    4.9   0.0     0.032        13       8      37 ..     263     292 ..     259     318 .. 0.74

  Alignments for each domain:
  == domain 1  score: 7.3 bits;  conditional E-value: 0.0057
                EEEEEBTTSSCCCCCCTTSSSS------ CS
      Septin  7 lmvvGesglGkttlintlfetdlieeek 34
                 m+vG++g Gkttl+  +  ++l +e+ 
  KOO22606.1  9 CMLVGANGAGKTTLMSVIGGKHLCKESA 36
                69*************9988888877754 PP

  == domain 2  score: 4.9 bits;  conditional E-value: 0.032
                 EEEEBTTSSCCCCCCTTSSSS--------- CS
      Septin   8 mvvGesglGkttlintlfetdlieeeklee 37 
                 ++vG++g Gkttl++ l  +++++ ++++ 
  KOO22606.1 263 LLVGANGAGKTTLLRLLGGKSMVPVDSVQC 292
                 79************9998888877766655 PP

>> AAA_7  P-loop containing dynein motor region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.3   0.1     0.015       6.2      34      52 ..       7      25 ..       3      46 .. 0.83
   2 ?    5.7   0.0     0.023       9.7      32      51 ..     258     277 ..     252     307 .. 0.87

  Alignments for each domain:
  == domain 1  score: 6.3 bits;  conditional E-value: 0.015
       AAA_7 34 kpvllvGptGtGKtviikd 52
                  ++lvG  G GKt++++ 
  KOO22606.1  7 CRCMLVGANGAGKTTLMSV 25
                679************9976 PP

  == domain 2  score: 5.7 bits;  conditional E-value: 0.023
       AAA_7  32 nkkpvllvGptGtGKtviik 51 
                 ++  +llvG  G GKt++++
  KOO22606.1 258 RGARCLLVGANGAGKTTLLR 277
                 67789***********9976 PP

>> cobW  CobW/HypB/UreG, nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.7   0.1     0.012       5.1       4      20 ..      10      26 ..       7      52 .. 0.84
   2 ?    6.9   0.5    0.0098       4.2       4      19 ..     263     278 ..     261     284 .. 0.87

  Alignments for each domain:
  == domain 1  score: 6.7 bits;  conditional E-value: 0.012
                EEEESTTCCHHHHHHHH CS
        cobW  4 vltGflGsGKTtLlnhl 20
                +l+G  G+GKTtL++ +
  KOO22606.1 10 MLVGANGAGKTTLMSVI 26
                789**********9765 PP

  == domain 2  score: 6.9 bits;  conditional E-value: 0.0098
                 EEEESTTCCHHHHHHH CS
        cobW   4 vltGflGsGKTtLlnh 19 
                 +l+G  G+GKTtLl+ 
  KOO22606.1 263 LLVGANGAGKTTLLRL 278
                 6899**********85 PP

>> EF-hand_like  Phosphoinositide-specific phospholipase C, efhand-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.7   0.0     0.024        10      16      47 ..     137     168 ..     132     176 .. 0.82
   2 ?    5.5   0.0     0.055        24      16      52 ..     401     437 ..     393     441 .. 0.85

  Alignments for each domain:
  == domain 1  score: 6.7 bits;  conditional E-value: 0.024
  EF-hand_like  16 qeyskdgeklslkelveFLreeQkeedaseel 47 
                   +e++ d + l  ++l +FLree +e+  s  +
    KOO22606.1 137 DEITTDLDLLARQDLLNFLREESEERGVSIVY 168
                   678889999**************999776555 PP

  == domain 2  score: 5.5 bits;  conditional E-value: 0.055
  EF-hand_like  16 qeyskdgeklslkelveFLreeQkeedaseelalelI 52 
                   +e++ d + +s + l +FLree  e+ a+  ++++++
    KOO22606.1 401 DEVTTDLDVVSRQALLQFLREECDERGATVIYSTHIL 437
                   6778889999***************998887777765 PP

>> TniB  Bacterial TniB protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.1   0.0      0.53   2.3e+02      38      53 ..       9      24 ..       2      36 .. 0.86
   2 ?    6.1   0.1     0.015       6.5     111     160 ..     120     169 ..      97     172 .. 0.77
   3 ?    3.4   0.0      0.11        45      30      53 ..     257     277 ..     246     280 .. 0.78
   4 ?   -0.8   0.1         2   8.6e+02     108     152 ..     385     425 ..     361     433 .. 0.68

  Alignments for each domain:
  == domain 1  score: 1.1 bits;  conditional E-value: 0.53
        TniB 38 lllvGdsnnGKtmive 53
                ++lvG    GKt++++
  KOO22606.1  9 CMLVGANGAGKTTLMS 24
                89***********985 PP

  == domain 2  score: 6.1 bits;  conditional E-value: 0.015
        TniB 111 vlrllrelk..vrvLiiDEihnllagsarkqreflnalksLgnelkipivlv 160
                  +++l +l+   ++L++DEi   l     +++ +ln+l+  ++e  ++iv++
  KOO22606.1 120 RVQILCKLMkpFKILLLDEITTDL--DLLARQDLLNFLREESEERGVSIVYC 169
                 3444433321269*******9999..788999*****************986 PP

  == domain 3  score: 3.4 bits;  conditional E-value: 0.11
        TniB  30 pkrkrmpnlllvGdsnnGKtmive 53 
                 p+      +llvG    GKt++++
  KOO22606.1 257 PRG---ARCLLVGANGAGKTTLLR 277
                 444...459************975 PP

  == domain 4  score: -0.8 bits;  conditional E-value: 2
        TniB 108 eqqvlrllrelkvrvLiiDEihnllagsarkqreflnalksLgne 152
                  q  l+llr    ++L++DE+   l   + +++++l++l+  ++e
  KOO22606.1 385 AQLLLKLLRP--SQLLLMDEVTTDL--DVVSRQALLQFLREECDE 425
                 3444445544..3689999999888..777888888888876665 PP

>> ATP-synt_ab  ATP synthase alpha/beta family, nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.1   0.0     0.076        32      13      35 ..       5      27 ..       2      87 .. 0.85
   2 ?    5.7   0.0     0.025        11       9      34 ..     254     279 ..     247     323 .. 0.88

  Alignments for each domain:
  == domain 1  score: 4.1 bits;  conditional E-value: 0.076
                 TT-EEEEEESTTSSHHHHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxx RF
  ATP-synt_ab 13 qGqrtlipgafgvGktvisqsls 35
                  G r++++ga+g Gkt++++ + 
   KOO22606.1  5 TGCRCMLVGANGAGKTTLMSVIG 27
                 58899*************96553 PP

  == domain 2  score: 5.7 bits;  conditional E-value: 0.025
                  S-EBTT-EEEEEESTTSSHHHHHHHH CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxx RF
  ATP-synt_ab   9 fpivqGqrtlipgafgvGktvisqsl 34 
                  f + +G r+l++ga+g Gkt++++ l
   KOO22606.1 254 FEVPRGARCLLVGANGAGKTTLLRLL 279
                  66789****************98655 PP

>> RNA_helicase  RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.9   0.0     0.039        16       2      19 ..      10      27 ..       9      48 .. 0.81
   2 ?    3.9   0.0      0.17        70       2      18 ..     263     279 ..     262     291 .. 0.86

  Alignments for each domain:
  == domain 1  score: 5.9 bits;  conditional E-value: 0.039
  RNA_helicase  2 wlyGpsgeGKStlakeLa 19
                  +l+G++g GK+tl+  + 
    KOO22606.1 10 MLVGANGAGKTTLMSVIG 27
                  799***********9864 PP

  == domain 2  score: 3.9 bits;  conditional E-value: 0.17
  RNA_helicase   2 wlyGpsgeGKStlakeL 18 
                   +l+G++g GK+tl + L
    KOO22606.1 263 LLVGANGAGKTTLLRLL 279
                   689**********9876 PP

>> MukB  MukB N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.1   0.1      0.02       8.4      30      45 ..      10      25 ..       7      40 .. 0.87
   2 ?    2.9   0.0      0.18        79      31      43 ..     264     276 ..     254     286 .. 0.88

  Alignments for each domain:
  == domain 1  score: 6.1 bits;  conditional E-value: 0.02
                HHHS--SHHHHHHHHH CS
        MukB 30 tlsGgnGaGksttmaa 45
                 l G+nGaGk+t m  
  KOO22606.1 10 MLVGANGAGKTTLMSV 25
                589*********9975 PP

  == domain 2  score: 2.9 bits;  conditional E-value: 0.18
                 HHS--SHHHHHHH CS
        MukB  31 lsGgnGaGksttm 43 
                 l G+nGaGk+t +
  KOO22606.1 264 LVGANGAGKTTLL 276
                 78********975 PP

>> RuvB_N  Holliday junction DNA helicase RuvB P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.0   0.0     0.044        19      36      55 ..       9      28 ..       6      68 .. 0.86
   2 ?    3.1   0.0      0.17        72      36      54 ..     262     280 ..     258     311 .. 0.86

  Alignments for each domain:
  == domain 1  score: 5.0 bits;  conditional E-value: 0.044
      RuvB_N 36 vllyGpPGlGkttlakiiak 55
                ++l+G+ G Gkttl ++i  
  KOO22606.1  9 CMLVGANGAGKTTLMSVIGG 28
                689************99964 PP

  == domain 2  score: 3.1 bits;  conditional E-value: 0.17
      RuvB_N  36 vllyGpPGlGkttlakiia 54 
                 +ll+G+ G Gkttl +++ 
  KOO22606.1 262 CLLVGANGAGKTTLLRLLG 280
                 69************98876 PP

>> MobB  Molybdopterin guanine dinucleotide synthesis protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.5   0.1     0.072        31       4      17 ..      11      24 ..       9      38 .. 0.89
   2 ?    4.5   0.2     0.072        31       4      18 ..     264     278 ..     262     282 .. 0.87

  Alignments for each domain:
  == domain 1  score: 4.5 bits;  conditional E-value: 0.072
        MobB  4 ivgksgsGKTtLle 17
                +vg +g+GKTtL++
  KOO22606.1 11 LVGANGAGKTTLMS 24
                89**********97 PP

  == domain 2  score: 4.5 bits;  conditional E-value: 0.072
        MobB   4 ivgksgsGKTtLlek 18 
                 +vg +g+GKTtLl  
  KOO22606.1 264 LVGANGAGKTTLLRL 278
                 79**********975 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.3   0.4    0.0097       4.2       3      19 ..       9      25 ..       8      31 .. 0.88
   2 ?    8.7   0.4    0.0036       1.5       3      18 ..     262     277 ..     260     281 .. 0.89

  Alignments for each domain:
  == domain 1  score: 7.3 bits;  conditional E-value: 0.0097
                EEEEC-TTTCHHHHHHH CS
       NACHT  3 vilqGeaGsGKTtLlqk 19
                ++l G++G GKTtL+  
  KOO22606.1  9 CMLVGANGAGKTTLMSV 25
                6899**********975 PP

  == domain 2  score: 8.7 bits;  conditional E-value: 0.0036
                 EEEEC-TTTCHHHHHH CS
       NACHT   3 vilqGeaGsGKTtLlq 18 
                 ++l G++G GKTtLl+
  KOO22606.1 262 CLLVGANGAGKTTLLR 277
                 789***********98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (559 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       378  (0.0210832); expected 358.6 (0.02)
Passed bias filter:                      334  (0.018629); expected 358.6 (0.02)
Passed Vit filter:                        95  (0.00529868); expected 17.9 (0.001)
Passed Fwd filter:                        44  (0.00245412); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              42  [number of targets reported over threshold]
# CPU time: 0.69u 0.29s 00:00:00.98 Elapsed: 00:00:00.46
# Mc/sec: 3628.49
//
Query:       KOO22607.1  [L=239]
Description: hypothetical protein Ctob_005598 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (239 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       250  (0.0139439); expected 358.6 (0.02)
Passed bias filter:                      238  (0.0132746); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.40u 0.23s 00:00:00.63 Elapsed: 00:00:00.39
# Mc/sec: 1824.16
//
Query:       KOO22608.1  [L=563]
Description: high mobility group protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.9e-16   59.6   0.2    2.9e-16   59.6   0.2    2.8  3  HMG_box          HMG (high mobility group) box
    1.4e-10   41.7   0.7    1.4e-10   41.7   0.7    2.5  3  HMG_box_2        HMG-box domain
    2.4e-09   37.2   0.0    5.7e-09   36.0   0.0    1.6  1  Myb_DNA-binding  Myb-like DNA-binding domain
    5.8e-05   23.3   0.0    0.00015   21.9   0.0    1.7  1  Myb_DNA-bind_6   Myb-like DNA-binding domain
  ------ inclusion threshold ------
        1.4    7.5   4.8        2.9    6.5   4.8    1.5  1  SpoVR            SpoVR like protein


Domain annotation for each model (and alignments):
>> HMG_box  HMG (high mobility group) box
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   3.0       3.2   1.1e+04      30      64 ..     258     292 ..     252     297 .. 0.74
   2 ?   -2.9   2.0       2.7   9.6e+03      41      62 ..     294     315 ..     286     317 .. 0.64
   3 !   59.6   0.2   8.2e-20   2.9e-16       1      66 [.     318     383 ..     318     385 .. 0.98

  Alignments for each domain:
  == domain 1  score: -3.1 bits;  conditional E-value: 3.2
                 HHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHH CS
     HMG_box  30 eiskklgekWkalseeeKkkYeekaekekaryeke 64 
                 + +k+++++ kal++e+K+  +++ ++e+ + +++
  KOO22608.1 258 AAAKQAERQAKALEKEAKATKRAAERAERDQANSA 292
                 55677788888999999988877777777777666 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 2.7
                 HSHHHHHHHHHHHHHHHHHHHH CS
     HMG_box  41 alseeeKkkYeekaekekarye 62 
                 ++++eeKk  +e+ ++ ka+ +
  KOO22608.1 294 KVEKEEKKAKREAERAIKAELM 315
                 4556666666666666666665 PP

  == domain 3  score: 59.6 bits;  conditional E-value: 8.2e-20
                 --SS--HHHHHHHHHHHHHHHHSTTS-HHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHH CS
     HMG_box   1 pkRplsafflfskeqraklkaenPelknaeiskklgekWkalseeeKkkYeekaekekaryekekp 66 
                 p +p s+++ f++e r+ lka +P+ ++ +++k  g+ Wkal e+eK+ Y +ka+++ +ry++e++
  KOO22608.1 318 PRKPHSSYLYFCDETREALKAAHPDTSVPDLAKLQGAAWKALDESEKQVYMDKAAEDLERYKAEME 383
                 789*************************************************************97 PP

>> HMG_box_2  HMG-box domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   2.0       4.3   1.6e+04      49      67 ..     265     283 ..     258     289 .. 0.71
   2 ?   -3.9   1.1         5   1.8e+04      47      52 ..     296     301 ..     276     313 .. 0.58
   3 !   41.7   0.7   3.8e-14   1.4e-10       3      70 ..     317     383 ..     315     386 .. 0.96

  Alignments for each domain:
  == domain 1  score: -3.4 bits;  conditional E-value: 4.3
                 HHHHHHHHHHHHHHHHHHH CS
   HMG_box_2  49 eeKekYeekAkedkkrydr 67 
                  + ++ e++Ak+ k +++r
  KOO22608.1 265 RQAKALEKEAKATKRAAER 283
                 4556677888888877766 PP

  == domain 2  score: -3.9 bits;  conditional E-value: 5
                 -HHHHH CS
   HMG_box_2  47 seeeKe 52 
                 ++eeK+
  KOO22608.1 296 EKEEKK 301
                 233333 PP

  == domain 3  score: 41.7 bits;  conditional E-value: 3.8e-14
                 -.-SS--HHHHHHHTTHHHHHHHT---SSHHHHTGGGHHHHHHS-HHHHHHHHHHHHHHHHHHHH-SS CS
   HMG_box_2   3 kpkaarnAYalfvqemipelkrkGnpviglaevsklcsekWkalseeeKekYeekAkedkkrydreal 70 
                  p+ + ++Y++f  e ++ lk+   p   + +  kl +  Wkal e+eK+ Y +kA ed +ry++e+ 
  KOO22608.1 317 MPRKPHSSYLYFCDETREALKAA-HPDTSVPDLAKLQGAAWKALDESEKQVYMDKAAEDLERYKAEME 383
                 69999******************.******************************************96 PP

>> Myb_DNA-binding  Myb-like DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.0   0.0   1.6e-12   5.7e-09       3      43 ..     176     218 ..     175     219 .. 0.96

  Alignments for each domain:
  == domain 1  score: 36.0 bits;  conditional E-value: 1.6e-12
                      SSBHHHHHHHHHHHHHHT.TCHHHHHHHHT.SS-HHHHHHHHH CS
  Myb_DNA-binding   3 kWteeEdelLleavkkhG.nrWkkIaerlg.gRtekqcrsrwr 43 
                      +W++eE+ +L  +v ++G ++Wk+Ia rlg gR++ ++  +++
       KOO22608.1 176 RWSAEEQARLMGLVTELGdKNWKEIAARLGnGRSATAVEQHYN 218
                      7*****************999*********99*********96 PP

>> Myb_DNA-bind_6  Myb-like DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.9   0.0   4.2e-08   0.00015       1      51 [.     177     228 ..     177     235 .. 0.87

  Alignments for each domain:
  == domain 1  score: 21.9 bits;  conditional E-value: 4.2e-08
  Myb_DNA-bind_6   1 WteeEdeiLlklvekygn.dWknIaeal.nrRtpkqcfdrwknkLrpkisrkk 51 
                     W++eE+ +L  lv + g+ +Wk+Ia  l n R+++++ ++++  +  k++r++
      KOO22608.1 177 WSAEEQARLMGLVTELGDkNWKEIAARLgNGRSATAVEQHYNI-VIGKRKRSN 228
                     ****************9559********669**********99.667777665 PP

>> SpoVR  SpoVR like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.5   4.8   0.00082       2.9     162     236 ..     261     337 ..     243     342 .. 0.52

  Alignments for each domain:
  == domain 1  score: 6.5 bits;  conditional E-value: 0.00082
       SpoVR 162 elvdrykrkekkkleeee.krkkereeyesqvedlwrtleekkkkeeeekek....eekfpeepeedlllFleknapeLe 236
                 ++ +r++++ +k+++ ++ ++++++++++++ +++   ++e+kk+++e++++      k+p++p++  l+F  ++ + L+
  KOO22608.1 261 KQAERQAKALEKEAKATKrAAERAERDQANSAKKV---EKEEKKAKREAERAikaeLMKMPRKPHSSYLYFCDETREALK 337
                 33444444322222222202222222222344444...33322222222222333355*************999887775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (563 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2431  (0.13559); expected 358.6 (0.02)
Passed bias filter:                      722  (0.04027); expected 358.6 (0.02)
Passed Vit filter:                       127  (0.0070835); expected 17.9 (0.001)
Passed Fwd filter:                        25  (0.00139439); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.79u 0.31s 00:00:01.10 Elapsed: 00:00:00.44
# Mc/sec: 3882.10
//
Query:       KOO22609.1  [L=333]
Description: outward rectifying potassium channel [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.3e-28   98.8  15.8    9.8e-16   57.5   7.2    2.3  2  Ion_trans_2  Ion channel
    3.5e-07   29.7   6.0    0.00056   19.2   0.1    2.3  2  Ion_trans    Ion transport protein
  ------ inclusion threshold ------
      0.015   15.1   0.5       0.18   11.6   0.0    2.0  2  Lig_chan     Ligand-gated ion channel


Domain annotation for each model (and alignments):
>> Ion_trans_2  Ion channel
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.5   7.2   1.6e-19   9.8e-16      12      78 ..       2      65 ..       1      66 [. 0.93
   2 !   46.3   1.3     5e-16     3e-12      11      71 ..     124     199 ..     117     204 .. 0.74

  Alignments for each domain:
  == domain 1  score: 57.5 bits;  conditional E-value: 1.6e-19
                 HHHHT....T---HHHHHHHHHHHHTTS----SSTT-----HHHHHHHHHHHHHHHHHHHHHHHHHH CS
  Ion_trans_2 12 viysleegwekwsfldalYfsfvtltTiGYGdivpetdagrlftivyillGlalfalflavlgkvlt 78
                 v y l   +e+w+ +d+lYf +vt tT+GYGd+ p++++ +lft++y ++G+a+++ +++ l+++lt
   KOO22609.1  2 VAYNL---LEGWQPIDSLYFITVTATTVGYGDFFPHSALSKLFTTFYSVVGIAVIFSYFNHLFTFLT 65
                 55666...8999*************************************************999986 PP

  == domain 2  score: 46.3 bits;  conditional E-value: 5e-16
                  HHHHHT..................T--.-HHHHHHHHHHHHTTS----SSTT-----HHHHHHHHHHHHHHHHHHH CS
  Ion_trans_2  11 aviysl..............eegwekw.sfldalYfsfvtltTiGYGdivpetdagrlftivyillGlalfalfla 71 
                  +v++++              e++  +w  +ld++Y+++vt+tTiGYGdi+p+t++ ++ t +++ +G++ ++  ++
   KOO22609.1 124 IVLHYMlirqthssaslverEQFFFDWlGLLDSFYWTVVTMTTIGYGDITPKTPIAKADTSMFVPMGVLALSQSIS 199
                  5555555555555556666544433332789*********************9999**********9998776666 PP

>> Ion_trans  Ion transport protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.2   2.0   1.3e-05     0.077     181     226 ..      14      53 ..      11      72 .. 0.80
   2 !   19.2   0.1   9.4e-08   0.00056     178     211 ..     152     185 ..      93     198 .. 0.74

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 1.3e-05
                 HHHHHHHHHHTTSSHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHH CS
   Ion_trans 181 tallwlfrlmttegwgdilyatldekskvaliyfvifiilgsflll 226
                 ++l+++++++tt+g+gd +++   +k      +f +f+ ++++ ++
  KOO22609.1  14 DSLYFITVTATTVGYGDFFPHSALSK------LFTTFYSVVGIAVI 53 
                 799***********************......77777766665443 PP

  == domain 2  score: 19.2 bits;  conditional E-value: 9.4e-08
                 SHHHHHHHHHHHHTTSSHHHHHHHHHHHSHHHHH CS
   Ion_trans 178 nfftallwlfrlmttegwgdilyatldekskval 211
                  ++++++w++++mtt+g+gdi+++t  +k  +++
  KOO22609.1 152 GLLDSFYWTVVTMTTIGYGDITPKTPIAKADTSM 185
                 4789*********************999833333 PP

>> Lig_chan  Ligand-gated ion channel
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0     3e-05      0.18      44     118 ..      10      85 ..       5     107 .. 0.83
   2 ?    1.7   0.1     0.036   2.1e+02      11      73 ..     118     181 ..     113     197 .. 0.82

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 3e-05
                 HHHHHHHHHHHHHHHHHH.HXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXS-SSCCHHHTGSSS CS
                 xxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    Lig_chan  44 ftlsnslwfslgalvqqG.cdesprsvsgRivvavWwffvlillssYtAnLaafltvermqtpiksledLakqtka 118
                 ++ ++sl+f++ + +  G +d  p s  +++ + ++ ++ + ++ sY   L  flt + ++++i  +  L++++++
  KOO22609.1  10 WQPIDSLYFITVTATTVGyGDFFPHSALSKLFTTFYSVVGIAVIFSYFNHLFTFLTADYWRDRILDCLGLVDNDQK 85 
                 56788999999999999999**************************************999999888777765553 PP

  == domain 2  score: 1.7 bits;  conditional E-value: 0.036
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHHHHHHHHHHHHHHHHHHH.HXXXXXXXXXXX CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxx RF
    Lig_chan  11 alilvsivlflverfspyewrepeeaaetveneftlsnslwfslgalvqqG.cdesprsvsgRi 73 
                 a+++v+ivl  +  ++ ++  +  e+++       l++s++ ++ +++  G +d++p++  ++ 
  KOO22609.1 118 AVLIVGIVLHYMLIRQTHSSASLVEREQFFFDWLGLLDSFYWTVVTMTTIGyGDITPKTPIAKA 181
                 68899999999999999998888777787888999999**999999999999999999877765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (333 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       717  (0.0399911); expected 358.6 (0.02)
Passed bias filter:                      546  (0.0304535); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.48u 0.23s 00:00:00.71 Elapsed: 00:00:00.39
# Mc/sec: 2553.80
//
Query:       KOO22610.1  [L=187]
Description: chaperone protein -related protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.1e-06   28.1   4.0    0.00088   18.6   0.5    2.1  2  DUF1356         Protein of unknown function (DUF1356)
    2.5e-05   24.5   9.0      0.021   15.2   0.3    3.1  3  DnaJ_CXXCXGXG   DnaJ central domain
  ------ inclusion threshold ------
      0.024   14.8  15.0        1.5    9.0   0.5    4.2  4  DUF5351         Family of unknown function (DUF5351)
       0.34   10.9  12.6        5.9    6.9   0.1    3.9  3  Anti-TRAP       Tryptophan RNA-binding attenuator protein inh


Domain annotation for each model (and alignments):
>> DUF1356  Protein of unknown function (DUF1356)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.6   0.5     2e-07   0.00088      12      43 ..      66      97 ..      60     106 .. 0.82
   2 !   10.7   0.2   5.1e-05      0.23      24      49 ..     153     178 ..     141     180 .. 0.87

  Alignments for each domain:
  == domain 1  score: 18.6 bits;  conditional E-value: 2e-07
     DUF1356 12 ekeskedvsqvpyveatgrdsvtCptCqGtGe 43
                 + ++e+  + p+v   g+  vtCp CqGtG+
  KOO22610.1 66 GQRNEEAANEQPCVVCKGARVVTCPVCQGTGR 97
                45567778899********************6 PP

  == domain 2  score: 10.7 bits;  conditional E-value: 5.1e-05
     DUF1356  24 yveatgrdsvtCptCqGtGeiPreqe 49 
                 +++  gr+ ++C  CqG+G  Pr +e
  KOO22610.1 153 CINCDGRGVIVCDNCQGSGLQPRFLE 178
                 77889***************999766 PP

>> DnaJ_CXXCXGXG  DnaJ central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.4   0.2     0.011        48      12      23 ..      73      84 ..      63      88 .. 0.55
   2 !   11.2   2.9   7.9e-05      0.35       1      27 [.      78      99 ..      78     122 .. 0.77
   3 !   15.2   0.3   4.7e-06     0.021      43      67 .]     152     171 ..     132     180 .. 0.76

  Alignments for each domain:
  == domain 1  score: 4.4 bits;  conditional E-value: 0.011
  DnaJ_CXXCXGXG 12 gkkktCktCkGs 23
                   ++++ C  CkG 
     KOO22610.1 73 ANEQPCVVCKGA 84
                   335557777775 PP

  == domain 2  score: 11.2 bits;  conditional E-value: 7.9e-05
  DnaJ_CXXCXGXG  1 CkkCkGsgakkgkkktCktCkGsGvvr 27
                   C  CkG         tC+ C+G+G+ +
     KOO22610.1 78 CVVCKGARV-----VTCPVCQGTGRDQ 99
                   888999985.....89********533 PP

  == domain 3  score: 15.2 bits;  conditional E-value: 4.7e-06
  DnaJ_CXXCXGXG  43 tCpeCeGtGkvikekdkCkkCkGkg 67 
                    tC +C+G+G ++     C++C+G+g
     KOO22610.1 152 TCINCDGRGVIV-----CDNCQGSG 171
                    677777777766.....77777764 PP

>> DUF5351  Family of unknown function (DUF5351)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.1   0.1      0.24   1.1e+03      20      26 ..      78      84 ..      77      86 .. 0.81
   2 ?    9.0   0.4   0.00035       1.6      19      28 ..      88      97 ..      87      98 .. 0.91
   3 ?    9.0   0.5   0.00034       1.5      16      28 ..     149     161 ..     147     162 .. 0.92
   4 ?    4.5   0.4    0.0087        39      20      27 ..     164     171 ..     163     173 .. 0.84

  Alignments for each domain:
  == domain 1  score: -0.1 bits;  conditional E-value: 0.24
     DUF5351 20 CesCeGt 26
                C  C+G+
  KOO22610.1 78 CVVCKGA 84
                8889996 PP

  == domain 2  score: 9.0 bits;  conditional E-value: 0.00035
     DUF5351 19 TCesCeGtgk 28
                TC+ C+Gtg 
  KOO22610.1 88 TCPVCQGTGR 97
                9*******96 PP

  == domain 3  score: 9.0 bits;  conditional E-value: 0.00034
     DUF5351  16 GSETCesCeGtgk 28 
                 GS TC  C G g+
  KOO22610.1 149 GSGTCINCDGRGV 161
                 9*********995 PP

  == domain 4  score: 4.5 bits;  conditional E-value: 0.0087
     DUF5351  20 CesCeGtg 27 
                 C+ C+G+g
  KOO22610.1 164 CDNCQGSG 171
                 99999998 PP

>> Anti-TRAP  Tryptophan RNA-binding attenuator protein inhibitory protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.3   3.4     0.037   1.6e+02      31      38 ..      87      94 ..      61      96 .. 0.56
   2 ?    6.9   0.1    0.0013       5.9      11      25 ..      87     101 ..      86     109 .. 0.80
   3 ?    5.8   2.5     0.003        14      18      42 ..     149     173 ..     140     176 .. 0.73

  Alignments for each domain:
  == domain 1  score: 2.3 bits;  conditional E-value: 0.037
                .E-TTTTT CS
   Anti-TRAP 31 leCPkCsG 38
                + CP C+G
  KOO22610.1 87 VTCPVCQG 94
                34555555 PP

  == domain 2  score: 6.9 bits;  conditional E-value: 0.0013
                 EE-TTTTTTSEETTE CS
   Anti-TRAP  11 tkCdaCngsGkiepe 25 
                 ++C+ C+g+G+ + +
  KOO22610.1  87 VTCPVCQGTGRDQYA 101
                 589999999987655 PP

  == domain 3  score: 5.8 bits;  conditional E-value: 0.003
                 TTSEETTE......E-TTTTTSSEE CS
   Anti-TRAP  18 gsGkiepeeprasleCPkCsGkgli 42 
                 gsG     + r+ + C +C+G gl 
  KOO22610.1 149 GSGTCINCDGRGVIVCDNCQGSGLQ 173
                 6677666677777777777777765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (187 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       691  (0.0385409); expected 358.6 (0.02)
Passed bias filter:                      478  (0.0266607); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.39u 0.22s 00:00:00.61 Elapsed: 00:00:00.35
# Mc/sec: 1579.05
//
Query:       KOO22611.1  [L=191]
Description: hypothetical protein Ctob_001609 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (191 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1243  (0.069329); expected 358.6 (0.02)
Passed bias filter:                      757  (0.0422221); expected 358.6 (0.02)
Passed Vit filter:                       126  (0.00702772); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.44u 0.27s 00:00:00.71 Elapsed: 00:00:00.40
# Mc/sec: 1417.48
//
Query:       KOO22612.1  [L=960]
Description: hypothetical protein Ctob_001608 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    3.8e-39  134.5   0.0    2.5e-38  131.8   0.0    2.1  1  Peptidase_C2  Calpain family cysteine protease
  ------ inclusion threshold ------
      0.077   12.9   0.2        0.2   11.5   0.2    1.7  1  TPR_1         Tetratricopeptide repeat
       0.11   12.5   0.0       0.53   10.4   0.0    2.1  1  TPR_7         Tetratricopeptide repeat
       0.15   12.3   0.0       0.43   10.8   0.0    1.8  1  TPR_2         Tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> Peptidase_C2  Calpain family cysteine protease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  131.8   0.0   5.6e-42   2.5e-38      32     294 ..     184     497 ..     180     500 .. 0.78

  Alignments for each domain:
  == domain 1  score: 131.8 bits;  conditional E-value: 5.6e-42
  Peptidase_C2  32 eivenpkfi.vdgasrtdikqGelgdCwllaaiasltlkekllkrvvpkeq...sfeekyaGifhfrfwrfgew..vdvvvDDrlPt..vngklvfv 120
                    +++ p++  +++++++d++qG++gdCwll+ai++l++ +  ++ ++ k+    s+ ++    +++ +w   +w  vdvvvD+rl    + + l+ +
    KOO22612.1 184 GVCDMPSLKiIGDVDPSDVNQGSVGDCWLLSAISALAEFDGAVSTLFRKTPnleSMPHEQPNKYTITLWDLATWkeVDVVVDERLASkaTGDGLLGC 280
                   578888854399**************************9999998887776232556667899**********955578******994333455557 PP

  Peptidase_C2 121 ksaeknefWsalleKAyAklhgsyealkggstsealedftggvtesiel............elkeapkelfkilkkalergslmgcsie........ 197
                     + + e+W++ leKA+A  +g +++++gg+ + a + +tg   e++++               + ++e++++l+++ ++g+      +        
    KOO22612.1 281 APSIDGELWVCYLEKAVAVHCGGWDEIDGGQCTHAWSILTGCK-EQYTIrrgpsgkfgckgM-FNPNDEVWEQLENSPQKGFRGLWP-Sawpkvggg 374
                   777889**********************************875.5566668*******9862.345555777777666654432221.123345555 PP

  Peptidase_C2 198 ...........................assaeeleaklengLvkgHaYsvtaveevelkkekvkLirlrnPWGeveW.kGawsdkskeWeevseeek 266
                                              a s++ ++++++ g+v gHaYsv+++ +  + +++v+Li++rnPWG+ e  +G + d+   W++  +e k
    KOO22612.1 375 gdytleldeeelftrmcawddanyilaAGSKAGSDTEMTDGVVDGHAYSVIDCIND-VAGTDVDLIKMRNPWGKGELeQGLFDDDGAGWDR-YPEIK 469
                   555555555555555555555555444333566778899************98774.5789************988737**********88.78999 PP

  Peptidase_C2 267 eklklkkkedgefwmsfedflknFtkle 294
                    +l+  +++dg f+++ e+f+k+F ++ 
    KOO22612.1 470 AELNPVAADDGIFYVTKEEFFKYFVTVY 497
                   ***99*******************9875 PP

>> TPR_1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.2   4.5e-05       0.2       8      27 ..     518     537 ..     513     539 .. 0.94

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 4.5e-05
                 HHHHHHTT-HHHHHHHHHHH CS
       TPR_1   8 GnayfklgkydeAleyyekA 27 
                 Gn+++k+g++ +Al  yek+
  KOO22612.1 518 GNMHLKMGEPAKALNLYEKC 537
                 9*****************97 PP

>> TPR_7  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.0   0.00012      0.53       2      25 ..     514     538 ..     513     545 .. 0.87

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00012
       TPR_7   2 LlnLarlysrlGdyeeAielyeq.s 25 
                 Ll  ++++ ++G+ ++A+ lye+ +
  KOO22612.1 514 LLSAGNMHLKMGEPAKALNLYEKcQ 538
                 57789*****************954 PP

>> TPR_2  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   9.5e-05      0.43       4      27 ..     514     537 ..     511     540 .. 0.88

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 9.5e-05
       TPR_2   4 lynlGlayyklgdyeeAleafekA 27 
                 l   G+ ++k+g++++Al+++ek+
  KOO22612.1 514 LLSAGNMHLKMGEPAKALNLYEKC 537
                 66789*****************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (960 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       362  (0.0201908); expected 358.6 (0.02)
Passed bias filter:                      341  (0.0190195); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.68u 0.25s 00:00:00.93 Elapsed: 00:00:00.44
# Mc/sec: 6491.86
//
Query:       KOO22613.1  [L=445]
Description: l-type lectin-domain containing receptor kinase -like protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.7e-38  131.8   0.0    3.7e-38  131.4   0.0    1.1  1  Pkinase        Protein kinase domain
    9.9e-38  129.9   0.0    1.4e-37  129.4   0.0    1.1  1  Pkinase_Tyr    Protein tyrosine kinase
     0.0009   19.0   0.1     0.0017   18.1   0.1    1.5  1  LRR_8          Leucine rich repeat
  ------ inclusion threshold ------
      0.025   14.5   0.0      0.094   12.6   0.0    1.9  2  APH            Phosphotransferase enzyme family
        0.1   11.5   0.0       0.17   10.8   0.0    1.3  1  Haspin_kinase  Haspin like kinase domain


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  131.4   0.0     1e-41   3.7e-38       9     211 ..     203     420 ..     202     437 .. 0.89

  Alignments for each domain:
  == domain 1  score: 131.4 bits;  conditional E-value: 1e-41
                 EESSEEEEEEEETTTTEEEEEEEEECHCHCHHHHHHHHHHHHHHHHHSCTTB--EEEEEEE..SSEEEEEEE--TTEBHHHHHH....HHSS--HHHHH CS
     Pkinase   9 eGsfGkVykaveketgkivAvKkikkekakkkkekkvlrEikilkklkhpnivrlyevfee..kdelylvleyveggeladlle....rkgslseeeak 101
                 eGsfG Vy+++    +++vAvK++++   +++++  +++E+  l+ ++hpn+v+l++++ +      +lv e+ ++g++ ++l     ++ +   ++  
  KOO22613.1 203 EGSFGPVYSGT-IGASQQVAVKVMAEATLSSEEQ--LRAELGALQMCRHPNLVQLLGCCIDdpRGGKCLVYELKPNGSIRSYLDkdlsTRIACGWRRRI 298
                 7**********.8*************99998775..************************94445578**********888877444466667777999 PP

                 HHHHHHHHHHHHHHHTT...EE-SS-SGGGEEEETTTEEEE-SGTTSEESSSSCS.........BCTTTSCGGGS-HHHHTTSCBSHHHHHHHHHHHHH CS
     Pkinase 102 kiakqilegleylHskg...iiHrDlKpeNiLidekgelKitDFGlakelesssk.........ltsfvgtseYlAPEvlkeneyskkvDvWslGvily 188
                 +++ q++++leylH      +iHrD+K++NiL+d++    i+DFGla+ ++ s k          t +vgt+ Y+ PE  ++ ++++++D++s Gv ++
  KOO22613.1 299 SWMLQVISALEYLHVIAepiMIHRDIKTANILLDSSLSACIGDFGLARLISDSAKaegaaakgaSTRIVGTPGYIDPEYARTGKITTASDIYSFGVCMI 397
                 **************55556699*******************************99********999********************************* PP

                 HHHHSS-STTTSSHHHHHHHHHH CS
     Pkinase 189 elltgkppfsgekgkekvekeld 211
                 ell+ +  f +++++    +e++
  KOO22613.1 398 ELLCSRRAFDKDRDEPALVSEFE 420
                 **********7777665555544 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  129.4   0.0   3.9e-41   1.4e-37       9     201 ..     203     402 ..     199     434 .. 0.83

  Alignments for each domain:
  == domain 1  score: 129.4 bits;  conditional E-value: 3.9e-41
                  EESSEEEEEEEEETTTTSSEEEEEEEEESTTSSHHHHHHHHHHHHHHHTS-BTTB--EEEEEE..SSSSEEEEEE--TTEBHHHHHHHTCTTTSB..H CS
  Pkinase_Tyr   9 eGafGkVvegtlkgekekkevkVavKtlkeeateeekeelleeakimkklkhpnivkllgvct..keepllivteyvkgGdLlkfLrkkekeklt..l 102
                  eG+fG V++gt+      ++++VavK++ e + ++ +e+l  e+  ++ ++hpn+v+llg+c+   ++  ++v e+ ++G+++++L k+ ++++    
   KOO22613.1 203 EGSFGPVYSGTIG-----ASQQVAVKVMAEATLSS-EEQLRAELGALQMCRHPNLVQLLGCCIddPRGGKCLVYELKPNGSIRSYLDKDLSTRIAcgW 294
                  8************.....899*******7766665.89*************************6545559******************9666555116 PP

                  HHHHHHHHHHHHHHHHHHHTT...EEEST-SGGGEEEEETTEEEE-STTTHEETTTSSEE....EETTSST..SGGGGS-HHHHHHSEEEHHHHHHHH CS
  Pkinase_Tyr 103 kdllsfalqvAkGmeyLeskk...lvHrdlaarNvLlsenkvvkisDfGLardiekddey....vkkeeak..lpvkWmapEslkekkftsksDvWsf 191
                  ++ +s++lqv +++eyL+      ++Hrd+ + N+Ll+++  + i+DfGLar i+++ +      k  +++      ++ pE  +++k+t++sD++sf
   KOO22613.1 295 RRRISWMLQVISALEYLHVIAepiMIHRDIKTANILLDSSLSACIGDFGLARLISDSAKAegaaAKGASTRivGTPGYIDPEYARTGKITTASDIYSF 392
                  77999************9765556******************************6555554532222222211345799******************* PP

                  HHHHHHHHTT CS
  Pkinase_Tyr 192 GvllwEiftl 201
                  Gv+++E+++ 
   KOO22613.1 393 GVCMIELLCS 402
                  *******984 PP

>> LRR_8  Leucine rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.1   0.1   4.8e-07    0.0017       2      61 .]      53     110 ..      52     110 .. 0.95

  Alignments for each domain:
  == domain 1  score: 18.1 bits;  conditional E-value: 4.8e-07
                 T-SEEE-TTS--SEE-TTSSTT-TT--EEE--SS---GGGGGGGTT--S-.EEE--SS-- CS
       LRR_8   2 nLtsLdLsnNrltslddeaFkglsnLkvLdLsnNllttlspgafsgLpsLrsLdLsgNrL 61 
                 +L+sL+L +    +l+++    +++L +L+ +n  l++l p+++++L+sL+ L L+gN L
  KOO22613.1  53 TLRSLSLKDCDVPELPPSICD-CPALASLSVTNCGLQRL-PDCLHQLASLDNLSLTGNVL 110
                 799***************999.*****************.9*****************76 PP

>> APH  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.0       0.3   1.1e+03      17      73 ..     213     272 ..     206     294 .. 0.68
   2 ?   12.6   0.0   2.6e-05     0.094     129     198 ..     282     347 ..     234     349 .. 0.75

  Alignments for each domain:
  == domain 1  score: -0.7 bits;  conditional E-value: 0.3
                 EETT.--EEEEEE-TT..S-HHHHHHHHHHHHHHHHTT-B--B-CTTBS-EEETTE..EEEE CS
         APH  17 ttpa.gryvlrrnppa..raaeeirrevallrlLakagvpvPevlagdtddeeigl..lfal 73 
                 t +a +++++++ ++a   ++e++r+e+  l+  +  ++   ++l ++ dd   g   +++l
  KOO22613.1 213 TIGAsQQVAVKVMAEAtlSSEEQLRAELGALQMCRHPNL--VQLLGCCIDDPRGGKclVYEL 272
                 555657999999999988888888888888877543333..477887777777776545555 PP

  == domain 2  score: 12.6 bits;  conditional E-value: 2.6e-05
                 HHCHHHCCCGCCTCCHHHHHHHHHHHHHHHH--SSS-EEEE-SS-SGGGEEEC..TTEEEEE-.--TT-EE CS
         APH 129 lesatarllaselldlleeleeqvlaalaallpgelptvllHgDlhpgNllvdpddgrvtGvi.Dfedagl 198
                 l++    ++a+ ++ ++  + + v+ al+ l     ++  +H+D+++ N+l+d     ++++i Df++a+l
  KOO22613.1 282 LDKDLSTRIACGWRRRISWMLQ-VISALEYLHVI-AEPIMIHRDIKTANILLD---SSLSACIgDFGLARL 347
                 4455455666666664444444.88888877776.8999**************...445566669999986 PP

>> Haspin_kinase  Haspin like kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   4.6e-05      0.17     196     259 ..     285     350 ..     179     356 .. 0.61

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 4.6e-05
  Haspin_kinase 196 dLeevklkswkqalsifwqivkiLyvaE..tkfeFEHRdLhldniLvdknlnvtlidlklsRless 259
                    dL++     w+   s + q+++ L      ++  + HRd++  niL+d++l   + d+ l+Rl s+
     KOO22613.1 285 DLSTRIACGWRRRISWMLQVISALEYLHviAEPIMIHRDIKTANILLDSSLSACIGDFGLARLISD 350
                    555555555655555555555555433311223356**************************9744 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (445 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       236  (0.013163); expected 358.6 (0.02)
Passed bias filter:                      211  (0.0117686); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.47u 0.26s 00:00:00.73 Elapsed: 00:00:00.42
# Mc/sec: 3203.33
//
Query:       KOO22614.1  [L=794]
Description: hypothetical protein Ctob_001623 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.3e-17   63.1   0.1    3.4e-16   59.3   0.0    2.3  2  Mrr_cat       Restriction endonuclease
  ------ inclusion threshold ------
       0.29   10.0  16.2      0.045   12.6   8.5    2.1  2  Spc7          Spc7 kinetochore protein
       0.36    9.8   2.9        2.7    6.9   2.9    1.9  2  IFT57         Intra-flagellar transport protein 57
       0.58    9.7  10.2       0.55    9.8   8.8    1.6  1  HAUS-augmin3  HAUS augmin-like complex subunit 3
        1.1    9.5   4.4        2.6    8.2   4.4    1.7  1  SesA          N-terminal domain on NACHT_NTPase and P-loop NT
        1.6    8.8   6.2        1.1    9.3   2.5    2.6  2  MCC-bdg_PDZ   PDZ domain of MCC-2 bdg protein for Usher syndr
          2    7.6  10.3       0.65    9.2   1.6    2.1  2  HemX          HemX, putative uroporphyrinogen-III C-methyltra
        2.2    8.4   7.1        4.6    7.4   7.1    1.5  1  CREPT         Cell-cycle alteration and expression-elevated p
          3    7.3   6.6       0.69    9.4   3.0    1.7  2  Apolipo_F     Apolipoprotein F
        7.1    4.0  16.5         11    3.4  16.5    1.1  1  DUF3584       Protein of unknown function (DUF3584)


Domain annotation for each model (and alignments):
>> Mrr_cat  Restriction endonuclease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.1   0.2      0.21   3.8e+02      43      78 ..     328     363 ..     293     373 .. 0.72
   2 !   59.3   0.0   1.9e-19   3.4e-16       4     115 .]     467     581 ..     464     581 .. 0.89

  Alignments for each domain:
  == domain 1  score: 1.1 bits;  conditional E-value: 0.21
                 TTEEEEEEEEEEE--TS-B-HHHHHHHHHHCTTS.. CS
     Mrr_cat  43 dplgserilvqaKryknkvgvkeVqeligalkkrga 78 
                 +++++  +++q K ++ + +++eV++l+ al++ ++
  KOO22614.1 328 AAFERAICALQDKDSELQAERNEVRSLREALQAARV 363
                 3444457889999999999***********998665 PP

  == domain 2  score: 59.3 bits;  conditional E-value: 1.9e-19
                 T-TTCHHHHHHHHHHHHSSSEE.E---B-TTSSB--EEEETTEEEEEEEEEEE--...TS-B-HHHHHHHHHHCTTS..SEEEEEESS-B-HHHHHHHH CS
     Mrr_cat   4 mspkeFeklvaellealGykev.eltgrsgDggiDliakkdplgserilvqaKry...knkvgvkeVqeligalkkrgadkgifvttsdftkaAreeae 98 
                  s++ +e+l ++l++ +Gy  v  ++ + gD giD+ a +++  +   ++q+K +   k++v+  e +e+iga++  g+++g fvt++ ft++A ++a+
  KOO22614.1 467 ASGTALEELTRRLFQVMGYL-VpPRNSGPGDRGIDVRAYRAD--DTLEVIQCKSKgrgKANVSFGEMSEFIGAMALAGCQTGHFVTNAAFTSQALQAAR 562
                 68999**************9.635777899*******99876..4588*******765589************************************** PP

                 TT-..-EEEE-HHHHHHHH CS
     Mrr_cat  99 eln..kieLldgdeLaell 115
                 +l   +++ l  deLa ll
  KOO22614.1 563 HLPerTVVTLGADELAALL 581
                 *863369999999999886 PP

>> Spc7  Spc7 kinetochore protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.1   4.1     0.021        37     202     260 ..     254     312 ..     247     314 .. 0.91
   2 ?   12.6   8.5   2.5e-05     0.045     144     247 ..     295     397 ..     292     418 .. 0.89

  Alignments for each domain:
  == domain 1  score: 3.1 bits;  conditional E-value: 0.021
        Spc7 202 eelreelaelkaeieekkkelaelqeqleeleekieelkeqkseleeeiaeaervleec 260
                 ++++ +l++++a  e+++  l++ +e+ ++l+ +++  ++  +++ +++ +++r +++ 
  KOO22614.1 254 NAVKLQLSRAEAASESLQSALNKSREESARLTRRVARRDAALKDALDQLGASQRDRKKA 312
                 788999******************************************99999998875 PP

  == domain 2  score: 12.6 bits;  conditional E-value: 2.5e-05
        Spc7 144 leenlegleedkelLekqeeeldellpeleeekaeleeeleklqeaaeelesidkeeLeelreelaelkaeieekkkelaelqeqleeleekieelkeq 242
                 l++ l++l + ++  +k ee ++e  ++l+ ++a+ e+ +  lq++  el++ +++e+++lre+l+++ ++ e++ +  + l+ +l+e +e++++++++
  KOO22614.1 295 LKDALDQLGASQRDRKKAEEGVEECREKLRDQEAAFERAICALQDKDSELQA-ERNEVRSLREALQAARVDGERRATANEHLRHKLAERDERLAAISAR 392
                 6788888889999999*****************************9999877.899****************************************999 PP

        Spc7 243 ksele 247
                 +++  
  KOO22614.1 393 CTREG 397
                 98755 PP

>> IFT57  Intra-flagellar transport protein 57
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.9   2.9    0.0015       2.7     250     342 ..     266     359 ..     253     366 .. 0.86
   2 ?    4.4   0.0    0.0084        15     270     338 ..     342     410 ..     341     413 .. 0.93

  Alignments for each domain:
  == domain 1  score: 6.9 bits;  conditional E-value: 0.0015
       IFT57 250 lhedisktlekiesrEkylnsqleellqeyreaqeelsevkekykqlsegvseltrelaeiseelekvkqemeergssm.tDgsplvkikkalt 342
                  +e ++ +l+k  +   +l++++    + +++a ++l + +++ k+++egv+e++++l++ +  +e++   ++++ s++ ++ + + ++++al+
  KOO22614.1 266 ASESLQSALNKSREESARLTRRVARRDAALKDALDQLGASQRDRKKAEEGVEECREKLRDQEAAFERAICALQDKDSELqAERNEVRSLREALQ 359
                 56778888888888888999999999999**********************************************9987256677888888887 PP

  == domain 2  score: 4.4 bits;  conditional E-value: 0.0084
       IFT57 270 sqleellqeyreaqeelsevkekykqlsegvseltrelaeiseelekvkqemeergssmtDgsplvkik 338
                 s+l+ + +e r+++e l++++ + + + + ++ l+++lae +e+l +++ +    g  ++D+s++++ +
  KOO22614.1 342 SELQAERNEVRSLREALQAARVDGERRATANEHLRHKLAERDERLAAISARCTREGPPLADASNIIQGR 410
                 6788899999******************************************************99865 PP

>> HAUS-augmin3  HAUS augmin-like complex subunit 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   8.8   0.00031      0.55      46     145 ..     292     395 ..     290     407 .. 0.86

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.00031
  HAUS-augmin3  46 geaLeeaLktie.psdlkqedvellevileeeeesleaLeqelqeLqkekalklkrlnkLqvqaaslqqel...rkleeeekeakkklkeaqeelra 138
                   ++aL++aL++++ ++++ ++++e +e+  e++++++ a+e+ + +Lq  +  ++ ++n+   +  +lq  +   ++++++++  ++kl e +e l+a
    KOO22614.1 292 DAALKDALDQLGaSQRDRKKAEEGVEECREKLRDQEAAFERAICALQDKDSELQAERNEVRSLREALQAARvdgERRATANEHLRHKLAERDERLAA 388
                   689*********877777799**************************************99998888876533367788888999999999999999 PP

  HAUS-augmin3 139 enaetna 145
                    +a+ ++
    KOO22614.1 389 ISARCTR 395
                   8888765 PP

>> SesA  N-terminal domain on NACHT_NTPase and P-loop NTPases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.2   4.4    0.0015       2.6      21     105 ..     274     357 ..     255     363 .. 0.80

  Alignments for each domain:
  == domain 1  score: 8.2 bits;  conditional E-value: 0.0015
        SesA  21 ikglpeaFrevgkrLplvqetLedaksqlesskldedtesaikpvlesckekatkleeifekv..apapadsrleryrkavrslgkg 105
                 +++ +e+  +  +r+    ++L+da +ql +s+ d ++   +++ +e+c+ek++  e+ fe    a +++ds+l+  r+ vrsl+++
  KOO22614.1 274 LNKSREESARLTRRVARRDAALKDALDQLGASQRDRKK---AEEGVEECREKLRDQEAAFERAicALQDKDSELQAERNEVRSLREA 357
                 55666666667777777788999999999999999864...78*******************9888888889999888888887765 PP

>> MCC-bdg_PDZ  PDZ domain of MCC-2 bdg protein for Usher syndrome
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3   2.5   0.00062       1.1      10      57 ..     264     312 ..     252     319 .. 0.82
   2 ?   -1.3   0.1       1.3   2.3e+03      11      35 ..     370     394 ..     351     396 .. 0.80

  Alignments for each domain:
  == domain 1  score: 9.3 bits;  conditional E-value: 0.00062
  MCC-bdg_PDZ  10 kaqnelLsltleerkqqseeLsldlgkaEsnatALvlALe....yserlkea 57 
                  +a+ e L+ +l  ++++s++L+ ++ ++    +AL+ AL+     +   k+a
   KOO22614.1 264 EAASESLQSALNKSREESARLTRRVARRD---AALKDALDqlgaSQRDRKKA 312
                  677899***********************...*******9666545455555 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 1.3
  MCC-bdg_PDZ  11 aqnelLsltleerkqqseeLsldlg 35 
                   +ne L+  l er ++ + +s ++ 
   KOO22614.1 370 TANEHLRHKLAERDERLAAISARCT 394
                  5788888888888888888877765 PP

>> HemX  HemX, putative uroporphyrinogen-III C-methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.7   3.0     0.018        32      18      98 ..     248     325 ..     242     332 .. 0.74
   2 ?    9.2   1.6   0.00036      0.65      33     113 ..     323     404 ..     318     409 .. 0.90

  Alignments for each domain:
  == domain 1  score: 3.7 bits;  conditional E-value: 0.018
        HemX  18 vgaglyylgqqqvqeltaevaelqqqlaaleqqlaqveaekeqkqeleerlqqlaeklealekeleqlqkqleelqqqlsk 98 
                 +g  + +  ++q ++++a +++lq++l++  +++a+   + ++ ++  ++l+++ ++l a+++  ++ ++ +ee +++l +
  KOO22614.1 248 IGCEACNAVKLQLSRAEAASESLQSALNKSREESAR---LTRRVARRDAALKDALDQLGASQRDRKKAEEGVEECREKLRD 325
                 677777888889988889999999999999999888...666666667777777888888888888877777777777765 PP

  == domain 2  score: 9.2 bits;  conditional E-value: 0.00036
        HemX  33 ltaevaelqqqlaaleqqlaqveaekeqkqeleerlqqlaeklealekeleqlqkqleelqqqlskvsga.erkdWlLaeAd 113
                 l+ + a+ + ++ al+++ ++++ae+++   l e+lq++  + e++++++e+l ++l+e  ++l+++s++ +r+   La+A 
  KOO22614.1 323 LRDQEAAFERAICALQDKDSELQAERNEVRSLREALQAARVDGERRATANEHLRHKLAERDERLAAISARcTREGPPLADAS 404
                 4567788999999********************************************************9888877888875 PP

>> CREPT  Cell-cycle alteration and expression-elevated protein in tumour
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.4   7.1    0.0026       4.6      39     119 ..     273     354 ..     262     361 .. 0.90

  Alignments for each domain:
  == domain 1  score: 7.4 bits;  conditional E-value: 0.0026
       CREPT  39 ki.kdkeeaekllkqveealellaeYnkrLeaeleeRkklakmledfleaqkellakaeekleelkeklekvksvrkelksh 119
                  + k++ee  +l++ v    ++l++   +L a   +Rkk ++ +e+  e ++++ a  e+ +  l++k ++++++r+e++s 
  KOO22614.1 273 ALnKSREESARLTRRVARRDAALKDALDQLGASQRDRKKAEEGVEECREKLRDQEAAFERAICALQDKDSELQAERNEVRSL 354
                 452489999**********************************************************************986 PP

>> Apolipo_F  Apolipoprotein F
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   3.0   0.00038      0.69      36     112 ..     247     321 ..     242     330 .. 0.75
   2 ?   -3.4   0.1       3.2   5.8e+03      48      87 ..     579     618 ..     572     622 .. 0.67

  Alignments for each domain:
  == domain 1  score: 9.4 bits;  conditional E-value: 0.00038
   Apolipo_F  36 eaGCqaeaeaLqlqLyklgGkdatetLirelqkleeeegigseesv...dalasaLqllarsqgelrRarRsvtleeCes 112
                 ++GC+a  +a++lqL++     a+e L  +l+k++ee +   +++    +al+ aL++l++sq++ ++a+ +  +eeC++
  KOO22614.1 247 DIGCEA-CNAVKLQLSRA--EAASESLQSALNKSREESARLTRRVArrdAALKDALDQLGASQRDRKKAEEG--VEECRE 321
                 799997.6899****996..5577888888888866655444443323358*************88887776..677876 PP

  == domain 2  score: -3.4 bits;  conditional E-value: 3.2
   Apolipo_F  48 lqLyklgGkdatetLirelqkleeeegigseesvdalasa 87 
                   L++  ++ at+  +  l ++++e+++ ++ +v+ l+ a
  KOO22614.1 579 ALLHRHHAQLATDHHVASLLESTRERRVADAAAVAVLQRA 618
                 5566677777777777777777777777777777666554 PP

>> DUF3584  Protein of unknown function (DUF3584)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.4  16.5     0.006        11     616     738 ..     261     391 ..     251     406 .. 0.39

  Alignments for each domain:
  == domain 1  score: 3.4 bits;  conditional E-value: 0.006
     DUF3584 616 qsaeakqkqaeeelkqlnaeleeakravaeaatalknardtlerlqnekesek...dklekaiaerkqqaeeqlqkldaqlkqleeqq...kaaleelk 708
                   aea  ++++++l++ ++e   + r va++ +alk a d+l+  q  +++++   +++ + + ++ ++ e+++  l+ +   l++++   +++ e+l+
  KOO22614.1 261 SRAEAASESLQSALNKSREESARLTRRVARRDAALKDALDQLGASQRDRKKAEegvEECREKLRDQEAAFERAICALQDKDSELQAERnevRSLREALQ 359
                 444444444444444444444444444444444444444444333333322220002222333333333333333333332222222200022222222 PP

     DUF3584 709 ..edlseerlekkakwqevvgeldeqlaelkk 738
                   +   e+r   +++++   +e+de la++++
  KOO22614.1 360 aaRVDGERRATANEHLRHKLAERDERLAAISA 391
                 00112334444444444444444444444443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (794 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1252  (0.069831); expected 358.6 (0.02)
Passed bias filter:                      593  (0.0330749); expected 358.6 (0.02)
Passed Vit filter:                       106  (0.00591221); expected 17.9 (0.001)
Passed Fwd filter:                        20  (0.00111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.88u 0.29s 00:00:01.17 Elapsed: 00:00:00.48
# Mc/sec: 4968.39
//
Query:       KOO22615.1  [L=190]
Description: sprt-like metalloprotease [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.8e-07   30.3   4.0    5.9e-07   29.3   4.0    1.5  1  Zn_ribbon_SprT  SprT-like zinc ribbon domain
    3.5e-07   30.1   0.2    6.5e-07   29.2   0.1    1.5  2  SprT-like       SprT-like family
    8.3e-05   22.9   0.0    0.00015   22.1   0.0    1.4  1  HMG_box         HMG (high mobility group) box
    8.5e-05   22.6   3.5    0.00021   21.3   3.5    1.6  1  Zn-ribbon_8     Zinc ribbon domain
  ------ inclusion threshold ------
      0.011   16.4   0.0      0.017   15.7   0.0    1.3  1  HMG_box_2       HMG-box domain
      0.073   13.3   0.2      0.091   13.0   0.2    1.2  1  DUF2072         Zn-ribbon containing protein


Domain annotation for each model (and alignments):
>> Zn_ribbon_SprT  SprT-like zinc ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.3   4.0     2e-10   5.9e-07       2      37 ..      49      85 ..      49      86 .. 0.96

  Alignments for each domain:
  == domain 1  score: 29.3 bits;  conditional E-value: 2e-10
  Zn_ribbon_SprT  2 kyvYrCtgCgreythhlsi.rrhnYrCrrCkgtLrgk 37
                    k+ YrCtgCg+e+ +h+++ + ++  C  C+g+L+++
      KOO22615.1 49 KFRYRCTGCGNEFARHSKSvDVERKCCAACGGRLTFV 85
                    89********************************986 PP

>> SprT-like  SprT-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.2   0.1   2.2e-10   6.5e-07      72     113 .]       1      41 [.       1      41 [. 0.98
   2 ?   -3.6   0.0       3.2   9.6e+03      85      99 ..      54      68 ..      47      76 .. 0.58

  Alignments for each domain:
  == domain 1  score: 29.2 bits;  conditional E-value: 2.2e-10
   SprT-like  72 lcHlalfvisgvrnnpHGaeFkawaakvekalaarleittkh 113
                 +cH+a ++++g+++ pHGa F+ wa++ e+a+ ++++i+t+h
  KOO22615.1   1 MCHAAQWLLEGEKQPPHGAAFQLWARAFERAV-PGMSIKTCH 41 
                 9******************************9.*******99 PP

  == domain 2  score: -3.6 bits;  conditional E-value: 3.2
   SprT-like 85 nnpHGaeFkawaakv 99
                +++ G+eF ++ + v
  KOO22615.1 54 CTGCGNEFARHSKSV 68
                444555665555554 PP

>> HMG_box  HMG (high mobility group) box
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.1   0.0   5.1e-08   0.00015       2      41 ..      97     136 ..      96     139 .. 0.95

  Alignments for each domain:
  == domain 1  score: 22.1 bits;  conditional E-value: 5.1e-08
                 -SS--HHHHHHHHHHHHHHHHSTTS-HHHHHHHHHHHHHH CS
     HMG_box   2 kRplsafflfskeqraklkaenPelknaeiskklgekWka 41 
                 +R  +a+  f+k +   lk+ +P+++ a+++  lg++W++
  KOO22615.1  97 PRTANAYAQFVKLHYVALKQAMPGASQADVMAALGQRWRE 136
                 7899**********************************97 PP

>> Zn-ribbon_8  Zinc ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.3   3.5   7.1e-08   0.00021       4      36 ..      50      82 ..      50      84 .. 0.88

  Alignments for each domain:
  == domain 1  score: 21.3 bits;  conditional E-value: 7.1e-08
  Zn-ribbon_8  4 YeYrCeeCghefevlqsisdapltaCPeCgsev 36
                 + YrC+ Cg+ef +  ++ d + ++C +Cg+++
   KOO22615.1 50 FRYRCTGCGNEFARHSKSVDVERKCCAACGGRL 82
                 57***********998877988888*****976 PP

>> HMG_box_2  HMG-box domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.7   0.0   5.8e-06     0.017       1      44 [.      94     135 ..      94     137 .. 0.95

  Alignments for each domain:
  == domain 1  score: 15.7 bits;  conditional E-value: 5.8e-06
                 ---.-SS--HHHHHHHTTHHHHHHHT---SSHHHHTGGGHHHHH CS
   HMG_box_2   1 pkkpkaarnAYalfvqemipelkrkGnpviglaevsklcsekWk 44 
                 p kp+   nAYa fv+     lk+   p +  a+v+ +++++W+
  KOO22615.1  94 PSKPRT-ANAYAQFVKLHYVALKQA-MPGASQADVMAALGQRWR 135
                 679888.8*****************.*****************9 PP

>> DUF2072  Zn-ribbon containing protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.2     3e-05     0.091       3      40 ..      53      92 ..      51     140 .. 0.75

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 3e-05
     DUF2072  3 kCtkCekvfedgskei...lkGCpsCGgkkFlyvkeeekke 40
                +Ct C+++f   sk++   +k C++CGg+  ++v   e++ 
  KOO22615.1 53 RCTGCGNEFARHSKSVdveRKCCAACGGR-LTFVGTFERDG 92
                8********98887664456899****96.56666655554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (190 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       550  (0.0306766); expected 358.6 (0.02)
Passed bias filter:                      380  (0.0211947); expected 358.6 (0.02)
Passed Vit filter:                        50  (0.00278878); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.43u 0.26s 00:00:00.69 Elapsed: 00:00:00.43
# Mc/sec: 1332.92
//
Query:       KOO22616.1  [L=317]
Description: NADH-cytochrome b5 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    5.6e-32  110.6   0.0    8.6e-32  110.0   0.0    1.3  1  NAD_binding_1  Oxidoreductase NAD-binding domain
    5.5e-26   90.8   0.0    1.5e-23   83.0   0.0    2.4  1  FAD_binding_6  Oxidoreductase FAD-binding domain
    0.00014   22.0   0.0    0.00023   21.4   0.0    1.3  1  FAD_binding_9  Siderophore-interacting FAD-binding domain
    0.00027   21.1   0.0      0.017   15.3   0.0    2.3  2  NAD_binding_6  Ferric reductase NAD binding domain


Domain annotation for each model (and alignments):
>> NAD_binding_1  Oxidoreductase NAD-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  110.0   0.0   1.9e-35   8.6e-32       1     108 [.     193     300 ..     193     301 .. 0.99

  Alignments for each domain:
  == domain 1  score: 110.0 bits;  conditional E-value: 1.9e-35
                    EEEEGGGGHHHHHHHHHHHHHCTTCSEEEEEEEESSGCGSTTHHHHHHHHHHCTTEEEEEEEESSCTTTSSSEESSHHHHHHHHHHHHSSTTEEEE CS
  NAD_binding_1   1 miagGtGiaPvrsvlraileeakdktkvvlvyGnrteedllyreeleelakklpgrlkvvavvsreeagweggkgrvqdalleellslkkeethvy 96 
                    m+agGtGi+P+++v+ ail++++d+t + l+y+n+te d+l+r+ le+la+k+pgrlk+ ++++r++a w+++ g+++d +++e l+ ++e+t+v+
     KOO22616.1 193 MMAGGTGITPMLQVMAAILKDPNDTTVMSLLYANQTEGDILVRDMLENLAAKHPGRLKLHYTLDRPPAVWKYSSGFITDTMIKENLPAPSEDTLVL 288
                    99********************************************************************************************** PP

                    EECSHHHHHHHH CS
  NAD_binding_1  97 vCGppgMikavr 108
                    +CGpp+M+k+++
     KOO22616.1 289 MCGPPPMVKFAC 300
                    *********998 PP

>> FAD_binding_6  Oxidoreductase FAD-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   83.0   0.0   3.4e-27   1.5e-23       2      99 .]      50     173 ..      49     173 .. 0.86

  Alignments for each domain:
  == domain 1  score: 83.0 bits;  conditional E-value: 3.4e-27
                    EEEEEEEECCTTEEEEEEEESTTTS-----TT-EEEEEEC.ETTC................CEEEEEE.BSSTTECCEEEEEEE--.........T CS
  FAD_binding_6   2 lkltekeevsedtrifrfklpsekqklglpvGqhvflrlk.ikge................aviRsYtpissenekGelellvkvy.........p 71 
                    l+l ++e++s+d+ +frfklp+++ +lglpvG+h+ l ++ +kg+                ++ R+Ytp++s++e G+++l++kvy          
     KOO22616.1  50 LTLGSRENLSHDVVRFRFKLPKATPVLGLPVGKHFKLFAPnCKGKvagqwnnqedkengepEIERKYTPTTSDDEIGYVDLVIKVYkggiierfpD 145
                    57899*******************************9988754432222333333333334578******************************** PP

                    T-HHHHHHHCS-TT-EEEEEEEE-SEEC CS
  FAD_binding_6  72 gGkmsqaLdelkigdtleikGPlGkfeY 99 
                    gGkmsq++d lk+gdt++i GP+G+ eY
     KOO22616.1 146 GGKMSQYMDTLKVGDTIDIMGPIGTHEY 173
                    *************************998 PP

>> FAD_binding_9  Siderophore-interacting FAD-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.4   0.0   5.1e-08   0.00023       4     119 ..      54     169 ..      51     171 .. 0.87

  Alignments for each domain:
  == domain 1  score: 21.4 bits;  conditional E-value: 5.1e-08
  FAD_binding_9   4 rverlspslrrvtltgeelagfksdgtDqhikLllpepgqtepelppelteeglqeweelpederpvmRtYtvraldaeaeeldidfvlHgde... 96 
                    + e+ls + +r+ ++ ++ + +     ++h+kL+ p+ +++          ++ ++ e+ ++ e  + R+Yt+ + d e + +d+ + + +     
     KOO22616.1  54 SRENLSHDVVRFRFKLPKATPVLGLPVGKHFKLFAPNCKGKVA-------GQW-NNQEDKENGEPEIERKYTPTTSDDEIGYVDLVIKVYKGGiie 141
                    5689999****************99***********9999875.......333.3344567888899**************999999999777788 PP

  FAD_binding_9  97 .....gpaarwAaqAqpGdelaivgPgg 119
                         g  +++  + ++Gd++ i+gP g
     KOO22616.1 142 rfpdgGKMSQYMDTLKVGDTIDIMGPIG 169
                    89999*********************77 PP

>> NAD_binding_6  Ferric reductase NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.0   3.8e-06     0.017       2      70 ..     189     251 ..     188     259 .. 0.85
   2 ?    3.5   0.0     0.016        71     132     149 ..     280     297 ..     269     302 .. 0.82

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 3.8e-06
                    xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  NAD_binding_6   2 envllvagGiGitpfisilkdllkkskkealktkkikliwvvressslewfkdvLneleeeksegniei 70 
                    +++ + agG+Gitp++ ++  +lk  +    +t+ ++l  ++  ++++  ++d+L++l+ +++  ++++
     KOO22616.1 189 KQLGMMAGGTGITPMLQVMAAILKDPN----DTTVMSLLYANQTEGDIL-VRDMLENLAAKHPG-RLKL 251
                    56789*********************9....9***************95.56699999888876.4444 PP

  == domain 2  score: 3.5 bits;  conditional E-value: 0.016
                    xxxxxxxxxxxxxxxxxx RF
  NAD_binding_6 132 hknssvgvfvCGppklvk 149
                    ++++ + v++CGpp +vk
     KOO22616.1 280 APSEDTLVLMCGPPPMVK 297
                    5678899********997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (317 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       466  (0.0259914); expected 358.6 (0.02)
Passed bias filter:                      446  (0.0248759); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.48u 0.24s 00:00:00.72 Elapsed: 00:00:00.40
# Mc/sec: 2378.71
//
Query:       KOO22617.1  [L=379]
Description: hypothetical protein Ctob_001616 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.1e-14   52.9   0.0    5.1e-14   52.2   0.0    1.2  1  PX        PX domain
     0.0085   15.8   0.7      0.016   14.9   0.1    1.9  2  CUE       CUE domain


Domain annotation for each model (and alignments):
>> PX  PX domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.2   0.0   5.7e-18   5.1e-14      17     111 ..     254     342 ..     239     343 .. 0.84

  Alignments for each domain:
  == domain 1  score: 52.2 bits;  conditional E-value: 5.7e-18
                 SSEEEEEEEEEETTSSSEEEEEEEHHHHHHHHHHHHHHHTTSTSTSSSTSGSSSSSCTTSHHHHHHHHHHHHHHHHHHHTSCHHHHSHHHHHHHH CS
          PX  17 kkhsyylyevelktgakewtvkRrYsdFeeLhskLlrkfprvkiPplPkkvlfgsvrkkdeefiekrrkgLeeyLqrllnhpelrnsevlteFLe 111
                  ++ ++l+ +e+++ a+ w+vkRrYs+F+++h+ L  +     +PplP+k lf++    + + +++r  +L++yL+ ll  p l  s+ + +FL+
  KOO22617.1 254 TDKIVTLFVIEVRQLAFCWEVKRRYSEFYRFHELLVLQWT--DLPPLPPKLLFSQ----ECDDLAERMMALDSYLRALLASPALALSPLVCTFLD 342
                 44555666666666679***************98888777..9**********85....99********************************96 PP

>> CUE  CUE domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.1   1.8e-06     0.016       1      42 []      41      81 ..      41      81 .. 0.94
   2 ?   -3.4   0.1      0.94   8.5e+03       3      11 ..     352     360 ..     351     360 .. 0.88

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 1.8e-06
                CHHHHHHHHHHSTTS-HHHHHHHHHHCTTTHHHHHHHHHHCC CS
         CUE  1 reqmletLkemFPdldeevIravLrasngnvEatinaLLegs 42
                r+q + +L+++FP+ + e+++a+    +g++ + ++++L ++
  KOO22617.1 41 RDQVIAQLQTIFPETSTEDLAAAV-VIGGDLQVIVDRILAMQ 81
                6899********************.99999999999999996 PP

  == domain 2  score: -3.4 bits;  conditional E-value: 0.94
                 HHHHHHHHH CS
         CUE   3 qmletLkem 11 
                 qml  L++m
  KOO22617.1 352 QMLPRLQQM 360
                 899999998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (379 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       492  (0.0274416); expected 358.6 (0.02)
Passed bias filter:                      331  (0.0184617); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.44u 0.23s 00:00:00.67 Elapsed: 00:00:00.38
# Mc/sec: 3006.11
//
Query:       KOO22618.1  [L=341]
Description: ATP-dependent RNA helicase dbp3 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.3e-08   34.4   0.0    5.5e-08   33.1   0.0    1.6  1  Helicase_C       Helicase conserved C-terminal domain
  ------ inclusion threshold ------
      0.034   14.1   0.3      0.034   14.1   0.3    3.0  3  INCENP_ARK-bind  Inner centromere protein, ARK binding region


Domain annotation for each model (and alignments):
>> Helicase_C  Helicase conserved C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.1   0.0   6.2e-12   5.5e-08      64     111 .]     249     296 ..     224     296 .. 0.88

  Alignments for each domain:
  == domain 1  score: 33.1 bits;  conditional E-value: 6.2e-12
                 TTSSSEEEESGGGTSSSTSTTESEEEESSSSSSHHHHHHHHTTSSSTT CS
  Helicase_C  64 kgesdvLiatdvaerGidipkvnlVinfdlprnvtsyiqriGRtgRag 111
                 +++ ++++a   a rG+d+p+++lVi   +p + + yi+ +GRtgRa+
  KOO22618.1 249 AERWKLIVAHESAIRGLDLPQLRLVILSMMPISAEAYIHIAGRTGRAY 296
                 4456799***************************************96 PP

>> INCENP_ARK-bind  Inner centromere protein, ARK binding region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.1   0.8     0.043   3.8e+02       5      18 ..      60      73 ..      57      75 .. 0.59
   2 ?   14.1   0.3   3.8e-06     0.034       8      33 ..     172     203 ..     169     211 .. 0.79
   3 ?   -1.8   1.5      0.34     3e+03       4      25 ..     210     227 ..     208     232 .. 0.57

  Alignments for each domain:
  == domain 1  score: 1.1 bits;  conditional E-value: 0.043
  INCENP_ARK-bind  5 Ddedddedeprkki 18
                     Dd+ddd+ +p+ ++
       KOO22618.1 60 DDDDDDNVAPSTSV 73
                     55555555576665 PP

  == domain 2  score: 14.1 bits;  conditional E-value: 3.8e-06
  INCENP_ARK-bind   8 dddede......prkkipsWAqspeLrqaLik 33 
                       +de++      +  ++p+WAq ++L+++L++
       KOO22618.1 172 SSDESAtvvgngEAAPLPAWAQPEKLTKQLKA 203
                      344444567779999***************86 PP

  == domain 3  score: -1.8 bits;  conditional E-value: 0.34
  INCENP_ARK-bind   4 sDdedddedeprkkipsWAqsp 25 
                      +Dd+d+ +++      +WA  +
       KOO22618.1 210 TDDSDSMQSD----DGAWAGDE 227
                      6677665554....34566555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (341 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       412  (0.0229795); expected 358.6 (0.02)
Passed bias filter:                      230  (0.0128284); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.45u 0.25s 00:00:00.70 Elapsed: 00:00:00.40
# Mc/sec: 2533.55
//
Query:       KOO22619.1  [L=244]
Description: ATP-dependent RNA helicase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.5e-22   79.5   0.1    3.6e-22   79.0   0.1    1.3  1  DEAD      DEAD/DEAH box helicase
    1.1e-05   25.6   0.0    0.00017   21.7   0.0    2.0  2  ResIII    Type III restriction enzyme, res subunit
  ------ inclusion threshold ------
      0.052   13.8   0.7       0.65   10.3   0.7    2.3  1  AAA_22    AAA domain
       0.12   12.7   0.3       0.22   11.8   0.3    1.7  1  AAA_19    AAA domain


Domain annotation for each model (and alignments):
>> DEAD  DEAD/DEAH box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   79.0   0.1   8.1e-26   3.6e-22       2     172 ..      37     227 ..      36     231 .. 0.79

  Alignments for each domain:
  == domain 1  score: 79.0 bits;  conditional E-value: 8.1e-26
                 HHHHHHHHHHHTTCEEEEEESTTSSHHHHHHHHHHHHHHHSTTSTS-EEEEEESSHHHHHHHHHHHHHHTTTSTSEEEEEETTSSHHHHHHHHH.TTCS CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxx RF
        DEAD   2 diQaeaiplilgggdvlvaaeTGsGKTlaflipvlqivyetkgktgpkalivePtreLaeqtlnnlkkfkkyidlrvlliiggvaardqlskld.ngvd 99 
                 +iQ++a+  +  g+++ ++ +TGsGKTl f++p+l ++   +     ++l+ +PtreLa qtl++++ +       ++ ++ g++ +  ++ l  +++ 
  KOO22619.1  37 PIQQAAMSRVFAGESLAIHSQTGSGKTLSFMLPLLLRL---RVGVPRQVLVCVPTRELAVQTLEHVQALSPM---AAV-LLRGTEPDLLRTSLAqQDAP 128
                 89*********************************888...566667*******************999984...333.456666666666665156** PP

                 EEEEEHHHHHHHH........HCTSSH.CTTEEEEEEETHHHHHHT.TTHHHHHHHHHHSHHHCTTST.TT................SEEEEEESSBS. CS
                 xxxxxxxxxxxxx........xxxxxx.xxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxx.xx................xxxxxxxxxxx. RF
        DEAD 100 ivvgtpgrlddll........stgkln.lsqvrflVlDEadrlldq.gfsdfinrilnqlpqitcdgk.lq................rqvivlSATlp. 170
                 ++++t g+l++l         ++   +  + +r+lVlDE d +l   g +  +nr  ++  ++ ++ + +q                 q+++ SATl+ 
  KOO22619.1 129 VLIATAGQLAKLNavlearggEQVLADlRRTLRTLVLDESDAILGPkGKGGMLNRSRRN--RAMEKLPqAQalrrlverrkdaehtrVQLVLASATLSa 225
                 ***********878899866544444444556************987777777773333..344444434478888899*****99899********95 PP

                 HH CS
                 xx RF
        DEAD 171 kd 172
                 + 
  KOO22619.1 226 RV 227
                 54 PP

>> ResIII  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.7   0.0   3.7e-08   0.00017      26     116 ..      51     139 ..      34     168 .. 0.70
   2 ?    1.8   0.0     0.047   2.1e+02       7      32 ..     194     219 ..     190     222 .. 0.85

  Alignments for each domain:
  == domain 1  score: 21.7 bits;  conditional E-value: 3.7e-08
                 EEEEEESTTSTHHHHH.HHHHHHH-S.....-EEEEESSHHHHHHHHHHGGGGTGG....GEEEESSS-B--.......-SEEEEEHHHHHH CS
      ResIII  26 rglikmaTGtGKTlva.aklierllkkgkeekflflvprkslleqtleefkkflseaykeigkkvsgdkkkakekdstnkkilvttiqslda 116
                  + i+  TG+GKTl   + l  rl+     +++l+ vp+++l  qtle+++ +++ a+      ++ d  + ++ +++++ +l++t  +l +
  KOO22619.1  51 SLAIHSQTGSGKTLSFmLPLLLRLRVG-VPRQVLVCVPTRELAVQTLEHVQALSPMAAV-LLRGTEPDLLR-TSLAQQDAPVLIATAGQLAK 139
                 567999*******98746777777765.556*******************999998752.22222222222.25555666666666666555 PP

  == domain 2  score: 1.8 bits;  conditional E-value: 0.047
                 HHHHHHHHHT......TTSEEEEEES CS
      ResIII   7 yQeeaienlleklkskrdkrglikma 32 
                  Q++a+++l+e +k+ +++r+ +++a
  KOO22619.1 194 PQAQALRRLVERRKDAEHTRVQLVLA 219
                 69************988888887776 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.7   0.00014      0.65       7     128 ..      51     219 ..      45     228 .. 0.57

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.00014
      AAA_22   7 ilvvtGesGtGKTtllrrlleqldeeakaee.....erpevvfvtlpsstsskdllrellralglelka.....................erlsseell 79 
                 +l+++ ++G+GKT++    l    ++  +++     + +e++  tl +   ++ ++  llr ++ +l +                     +   + +  
  KOO22619.1  51 SLAIHSQTGSGKTLSFMLPLLLRLRVGVPRQvlvcvPTRELAVQTLEHVQALSPMAAVLLRGTEPDLLRtslaqqdapvliatagqlaklNAVLEARGG 149
                 789999999999999776666655555444455666333333333333334444444444444444444666667777777777766553333333333 PP

      AAA_22  80 ealeqalraravielliiDEaqhlr....s..................eealeeLrsllnl.srkgvqliLv 128
                 e++   lr++ +   l++DE + +     +                  ++al+ L+++ ++ +++ vql+L+
  KOO22619.1 150 EQVLADLRRTLR--TLVLDESDAILgpkgKggmlnrsrrnrameklpqAQALRRLVERRKDaEHTRVQLVLA 219
                 666666666655..9999999995447652344444556555555444444444444444467777777775 PP

>> AAA_19  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.3     5e-05      0.22       1     111 [.      39     168 ..      39     241 .. 0.72

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 5e-05
      AAA_19   1 qreave.alkekvllvtaGpGtGKTrvlkhivallvelggvkpeeillvaftgrAakelrerlaalgae.........................atTiH 73 
                 q++a++  ++ + l++    G+GKT   +  + l +++g   p+++l++ +t+  a +  e ++al                            + T  
  KOO22619.1  39 QQAAMSrVFAGESLAIHSQTGSGKTLSFMLPLLLRLRVG--VPRQVLVCVPTRELAVQTLEHVQALSPMaavllrgtepdllrtslaqqdapvlIATAG 135
                 67777668889999999*******987776666666666..58*********99666666666444433555666666666666666666666655555 PP

      AAA_19  74 rlalldfddlltealelleeaeeekklqeee.llivDEf 111
                 +la l++  +           +   +l+++  +l+ DE+
  KOO22619.1 136 QLAKLNAVLEARGGE------QVLADLRRTLrTLVLDES 168
                 554422222221111......222334444456666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (244 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       499  (0.027832); expected 358.6 (0.02)
Passed bias filter:                      329  (0.0183502); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.44u 0.23s 00:00:00.67 Elapsed: 00:00:00.39
# Mc/sec: 1859.38
//
Query:       KOO22620.1  [L=385]
Description: hypothetical protein Ctob_001614 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      2e-09   36.3   0.2    7.5e-05   22.0   0.1    3.0  2  EF-hand_1  EF hand
    8.2e-08   32.6   0.4    3.3e-07   30.7   0.3    2.1  2  EF-hand_7  EF-hand domain pair
    5.4e-06   25.7   2.6    0.00081   18.8   0.0    2.9  3  EF-hand_5  EF hand
    1.2e-05   25.1   0.4     0.0001   22.1   0.1    2.5  3  EF-hand_8  EF-hand domain pair
    1.7e-05   24.4   0.1       0.23   11.5   0.0    3.0  2  EF-hand_6  EF-hand domain
     0.0013   17.7   0.2     0.0019   17.2   0.2    1.2  1  Spc7       Spc7 kinetochore protein


Domain annotation for each model (and alignments):
>> EF-hand_1  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.4   0.0   6.4e-05      0.19       2      27 ..     292     317 ..     291     319 .. 0.92
   2 !   22.0   0.1   2.5e-08   7.5e-05       2      27 ..     341     366 ..     340     368 .. 0.90

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 6.4e-05
                 HHHHHHHHTTTSSSEEEHHHHHHHHH CS
   EF-hand_1   2 lkeiFrefDkDgdGkIdfeEfkellk 27 
                 ++e+ +++D   dG+++++E k +l+
  KOO22620.1 292 VREALKDLDATSDGTLERDEIKLYLR 317
                 799******************99987 PP

  == domain 2  score: 22.0 bits;  conditional E-value: 2.5e-08
                 HHHHHHHHTTTSSSEEEHHHHHHHHH CS
   EF-hand_1   2 lkeiFrefDkDgdGkIdfeEfkellk 27 
                 ++ +++++D ++dG++++eEf ++++
  KOO22620.1 341 VDTLMDIVDANNDGRVNYEEFAKVVM 366
                 67899****************99986 PP

>> EF-hand_7  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.0       2.8   8.2e+03      15      27 ..     122     135 ..     120     157 .. 0.64
   2 !   30.7   0.3   1.1e-10   3.3e-07       4      69 ..     292     364 ..     289     366 .. 0.83

  Alignments for each domain:
  == domain 1  score: -2.7 bits;  conditional E-value: 2.8
   EF-hand_7  15 gdgyldkeellr.l 27 
                 ++ ++++++++r l
  KOO22620.1 122 NRAFMNVSDFRRaL 135
                 67788888888733 PP

  == domain 2  score: 30.7 bits;  conditional E-value: 1.1e-10
   EF-hand_7   4 lkeaFkelDtdgdgyldkeellrllrkifqga........gegsklsdeelellfkefDtdkdGvisfdEFlkl 69 
                 ++ea k lD   dg l+++e++ +lr ++            +  ++++  +++l++ +D ++dG+++++EF k 
  KOO22620.1 292 VREALKDLDATSDGTLERDEIKLYLRENYI-LqyvdfytgITRGVIDEATVDTLMDIVDANNDGRVNYEEFAKV 364
                 5788999***************76665443.2599999975555558888*********************986 PP

>> EF-hand_5  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.1       2.4   7.3e+03       4      10 ..      37      43 ..      36      43 .. 0.85
   2 !    6.3   0.0    0.0025       7.4       3      22 ..     294     313 ..     292     316 .. 0.86
   3 !   18.8   0.0   2.7e-07   0.00081       4      25 .]     344     365 ..     341     366 .. 0.86

  Alignments for each domain:
  == domain 1  score: -3.2 bits;  conditional E-value: 2.4
                HHHHH-S CS
   EF-hand_5  4 tFqaiDl 10
                tF+++Dl
  KOO22620.1 37 TFDMADL 43
                8999996 PP

  == domain 2  score: 6.3 bits;  conditional E-value: 0.0025
                 HHHHHH-SS-SSCE-HHHHH CS
   EF-hand_5   3 dtFqaiDlNgDGkIskeELk 22 
                 ++++ +D+  DG++ ++E k
  KOO22620.1 294 EALKDLDATSDGTLERDEIK 313
                 568899************76 PP

  == domain 3  score: 18.8 bits;  conditional E-value: 2.7e-07
                 HHHHH-SS-SSCE-HHHHHHHH CS
   EF-hand_5   4 tFqaiDlNgDGkIskeELktlv 25 
                 + + +D+N+DG+++ eE+ ++v
  KOO22620.1 344 LMDIVDANNDGRVNYEEFAKVV 365
                 67889*************9965 PP

>> EF-hand_8  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.0       1.2   3.6e+03       7      18 ..     128     140 ..     124     156 .. 0.62
   2 ?   -0.8   0.0      0.46   1.4e+03      27      49 ..     291     313 ..     280     319 .. 0.79
   3 !   22.1   0.1   3.4e-08    0.0001      23      50 ..     336     363 ..     326     366 .. 0.82

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 1.2
   EF-hand_8   7 reelrril.rilg 18 
                 + ++rr+l  ++g
  KOO22620.1 128 VSDFRRALcYAMG 140
                 5799999877664 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 0.46
   EF-hand_8  27 evdilfrefDtdgdGkisfeEFc 49 
                  v++ ++ +D   dG++  +E  
  KOO22620.1 291 TVREALKDLDATSDGTLERDEIK 313
                 48888999999999999999975 PP

  == domain 3  score: 22.1 bits;  conditional E-value: 3.4e-08
   EF-hand_8  23 lseeevdilfrefDtdgdGkisfeEFcv 50 
                 + e  vd+l++ +D ++dG++++eEF  
  KOO22620.1 336 IDEATVDTLMDIVDANNDGRVNYEEFAK 363
                 66778*********************86 PP

>> EF-hand_6  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.5   0.0   7.7e-05      0.23       2      27 ..     292     317 ..     291     325 .. 0.92
   2 !    9.4   0.0   0.00035       1.1       7      26 ..     346     365 ..     341     368 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 7.7e-05
   EF-hand_6   2 lreaFklfDkdgdGkidaeElrkalr 27 
                 +rea k +D + dG++ ++E++  lr
  KOO22620.1 292 VREALKDLDATSDGTLERDEIKLYLR 317
                 68999*****************9999 PP

  == domain 2  score: 9.4 bits;  conditional E-value: 0.00035
   EF-hand_6   7 klfDkdgdGkidaeElrkal 26 
                 ++ D ++dG +++eE+ k+ 
  KOO22620.1 346 DIVDANNDGRVNYEEFAKVV 365
                 577*************9975 PP

>> Spc7  Spc7 kinetochore protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   0.2   6.2e-07    0.0019     187     273 ..     189     276 ..     183     280 .. 0.91

  Alignments for each domain:
  == domain 1  score: 17.2 bits;  conditional E-value: 6.2e-07
        Spc7 187 qeaaeeles.idkeeLeelreelaelkaeieekkkelaelqeqleeleekieelkeqkseleeeiaeaervleeckgwsesevsrlke 273
                 q++a++++   d   L+e++++l ++++e++ ++++ a+  e + + ++++ ++k++++  ++++++ae++   ++g++   v+r k+
  KOO22620.1 189 QQFARDVQRmADGSGLNEMQQALFDAEQELADRSNKAARAAEAMRDADATWGDAKARMEARQAQTEAAEKIPFGKRGSTLGKVERAKK 276
                 777888887345899**************************************************************99999999886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (385 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       764  (0.0426125); expected 358.6 (0.02)
Passed bias filter:                      556  (0.0310112); expected 358.6 (0.02)
Passed Vit filter:                        56  (0.00312343); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.50u 0.24s 00:00:00.74 Elapsed: 00:00:00.39
# Mc/sec: 2992.93
//
Query:       KOO22621.1  [L=386]
Description: cysteine proteinase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    8.7e-50  169.8   8.0    1.8e-49  168.8   8.0    1.5  1  Peptidase_C1    Papain family cysteine protease
    3.7e-07   30.5   1.0    5.8e-07   29.9   1.0    1.3  1  Inhibitor_I29   Cathepsin propeptide inhibitor domain (I29)
     0.0064   15.3   1.2       0.52    9.0   0.1    2.5  3  Peptidase_C1_2  Peptidase C1-like family


Domain annotation for each model (and alignments):
>> Peptidase_C1  Papain family cysteine protease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  168.8   8.0     3e-53   1.8e-49       2     216 ..     118     356 ..     117     358 .. 0.83

  Alignments for each domain:
  == domain 1  score: 168.8 bits;  conditional E-value: 3e-53
                   TSCEETTTTTTGSG---B-TSSBTHHHHHHHHHHHHHHHHHHS.SS---B-HHHHHHHSTTTSTGGGBB-HHHHHHHHHH.TEBEBTTTS--SSSCS CS
  Peptidase_C1   2 pesvDwrekggavtpvkdqgsCGsCWafsavgaledrlaiktk.kklvslSeqelvdCskeenegCnGGlmenafeyikk.ggivtekdypYkakeg 96 
                   p+++Dw    +avt++k+qg+CGsCWafsa++a+e++l+++++ +  ++l+ q+  +C+ +  +gCnGG+ e a+ey+ + +g+++  +ypY ++ +
    KOO22621.1 118 PAALDWQFT-SAVTAIKNQGQCGSCWAFSATEAVESQLVLSSGnQVRIELAPQQTTSCTPSPAQGCNGGFTEAAYEYMGTvTGLTNSFNYPYMQSLT 213
                   8899***97.59******************************988899**********999999****************************95444 PP

                   .....SS-CGCGGGSE..........EBEESEEEEEESS.........BHHHHHHHHHHHSSEEEEEECCSHHHHTEESSEESSTSCET...SS-EE CS
  Peptidase_C1  97 .....gkCkkkkkkek..........vakikgygkvken.........seealkkalakngPvsvaidaseedfqlYksGvyketecsk...telnh 166
                        + C++ k  +           +a ++gy+  +           + +al++a+ +  Pvsv+++a +  ++ Y++Gv+++ +c +   ++ +h
    KOO22621.1 214 atsatQACNTAKVAAIdgpmmqltggYAAVSGYHYATTPctsgacanqDLAALQAAIET-TPVSVCVNAAS--WNDYTGGVMTSAACGSmaaKAQDH 307
                   44556455555433334554444444333333333222244555555478889999988.**********9..59**********9988777899** PP

                   EEEEEEEEEETTEEEEEEE-SBTTTSTBTTEEEEESSSSTGGGTTSSEEE CS
  Peptidase_C1 167 avlivGygvengkkyWivkNsWgtdwgekGYiriargknnecgieseava 216
                    v++ G++++  ++yWiv+NsW+++wge GYi ++  +n +cgi+++a++
    KOO22621.1 308 CVMATGFNTTAPTPYWIVRNSWSSTWGEYGYIYLEMAEN-TCGIADDATI 356
                   ************************************988.*****99876 PP

>> Inhibitor_I29  Cathepsin propeptide inhibitor domain (I29)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.9   1.0   9.7e-11   5.8e-07       1      57 [.      31      88 ..      31      89 .. 0.92

  Alignments for each domain:
  == domain 1  score: 29.9 bits;  conditional E-value: 9.7e-11
  Inhibitor_I29  1 FeswmdkygkkYrhsseinerfenFkeNlrqiqehNa.nknvtftlglNkfsDlsheE 57
                   +e++++ y+k+Y+++ ++ er   F+   ++++ +N+ nk++   +g+N fsD +++E
     KOO22621.1 31 WEDYKKMYKKTYESPADERERQSLFEASKQRVARLNEvNKKAGNAFGINWFSDRKPDE 88
                   89**********************************54777777*********99988 PP

>> Peptidase_C1_2  Peptidase C1-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.0      0.22   1.3e+03     258     283 ..      19      47 ..      15      92 .. 0.64
   2 !    9.0   0.1   8.7e-05      0.52      57      80 ..     131     154 ..     106     166 .. 0.80
   3 !    4.3   0.0    0.0023        14     359     396 ..     305     340 ..     295     347 .. 0.82

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 0.22
                     EEEE--T-TTS-...TTEEEEETT--SST CS
  Peptidase_C1_2 258 vslinaPtadkp...ynklytvellgnvv 283
                     v +++aP++d++   y+k+y+  +++   
      KOO22621.1  19 VRVVEAPQKDQEwedYKKMYKKTYESPAD 47 
                     77788888776422366777766665544 PP

  == domain 2  score: 9.0 bits;  conditional E-value: 8.7e-05
                     S--B--BSSTHHHHHHHHHHHHHH CS
  Peptidase_C1_2  57 evtnqkqsGRCWlFaalnvlRlkl 80 
                      + nq q G CW F+a+ ++  +l
      KOO22621.1 131 AIKNQGQCGSCWAFSATEAVESQL 154
                     689*************99887665 PP

  == domain 3  score: 4.3 bits;  conditional E-value: 0.0023
                     --EEEEEEEEEE-TTSSEEEEEEE-SBTTTSTBTTEEE CS
  Peptidase_C1_2 359 mtHamvltgvdvdddgkvtkwkvEnsWGedsGekGyfv 396
                      +H ++ tg++   +  +  w v nsW    Ge Gy  
      KOO22621.1 305 QDHCVMATGFNT--TAPTPYWIVRNSWSSTWGEYGYIY 340
                     578888888888..666778***************975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (386 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       813  (0.0453455); expected 358.6 (0.02)
Passed bias filter:                      486  (0.0271069); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.48u 0.26s 00:00:00.74 Elapsed: 00:00:00.39
# Mc/sec: 2963.17
//
Query:       KOO22622.1  [L=925]
Description: hypothetical protein Ctob_001617 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.7e-51  174.4   1.8    3.2e-51  173.5   1.8    1.5  1  Acyl-CoA_dh_1  Acyl-CoA dehydrogenase, C-terminal domain
    3.7e-26   92.0   0.3    2.6e-25   89.3   0.1    2.5  2  Acyl-CoA_dh_N  Acyl-CoA dehydrogenase, N-terminal domain
    4.2e-26   91.0   0.5    1.5e-25   89.3   0.3    2.1  1  Acyl-CoA_dh_M  Acyl-CoA dehydrogenase, middle domain
    2.1e-24   86.7   0.1    2.9e-24   86.2   0.1    1.2  1  Amino_oxidase  Flavin containing amine oxidoreductase
    1.9e-20   73.5   2.0    5.6e-20   72.0   2.0    1.8  1  Acyl-CoA_dh_2  Acyl-CoA dehydrogenase, C-terminal domain
    2.9e-14   53.0   0.3    1.8e-13   50.5   0.6    2.2  2  NAD_binding_8  NAD(P)-binding Rossmann-like domain
    3.1e-11   43.0   0.0    8.9e-05   21.9   0.1    2.5  2  Pyr_redox_2    Pyridine nucleotide-disulphide oxidoreductase
      5e-07   29.6   7.2    2.9e-06   27.1   6.5    2.5  2  DAO            FAD dependent oxidoreductase
      8e-07   28.1   1.3      0.017   13.9   0.6    2.7  3  HI0933_like    HI0933-like protein
    2.8e-05   24.2   1.2       0.28   11.2   0.0    2.8  3  NAD_binding_9  FAD-NAD(P)-binding
    4.1e-05   22.9   0.4      9e-05   21.8   0.4    1.5  1  Thi4           Thi4 family
    0.00033   20.1   0.2    0.00052   19.5   0.2    1.3  1  FAD_oxidored   FAD dependent oxidoreductase
     0.0019   17.9   0.1     0.0041   16.8   0.1    1.5  1  HpaB_N         4-hydroxyphenylacetate 3-hydroxylase N termina
     0.0029   16.7   1.2      0.042   12.9   1.1    2.2  2  GIDA           Glucose inhibited division protein A
     0.0032   16.6   2.2     0.0032   16.6   2.2    1.7  2  FAD_binding_2  FAD binding domain
     0.0038   16.5   1.5      0.011   15.1   0.8    1.9  2  FAD_binding_3  FAD binding domain
     0.0056   15.8   0.7     0.0056   15.8   0.7    1.7  2  Lycopene_cycl  Lycopene cyclase protein
  ------ inclusion threshold ------
       0.02   15.4   0.0       0.22   12.1   0.2    2.4  2  Pyr_redox      Pyridine nucleotide-disulphide oxidoreductase
       0.13   11.9   0.3        0.5   10.0   0.3    1.9  2  ApbA           Ketopantoate reductase PanE/ApbA
       0.14   12.0   0.2       0.27   11.1   0.2    1.4  1  3HCDH_N        3-hydroxyacyl-CoA dehydrogenase, NAD binding d


Domain annotation for each model (and alignments):
>> Acyl-CoA_dh_1  Acyl-CoA dehydrogenase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  173.5   1.8   3.6e-54   3.2e-51       3     149 ..     769     915 ..     767     916 .. 0.99

  Alignments for each domain:
  == domain 1  score: 173.5 bits;  conditional E-value: 3.6e-54
                    HHHHHTTTT--S-----..-SHHHHHHHHHHHHHHHTSB-CC-BGGGSHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHH CS
  Acyl-CoA_dh_1   3 GfrvametlnheRlavaaaalglarraleealeyarrrkafgkplidhqlvreklaemaaeleaarllvyraaealdagkpdraeasmaKlfasel 98 
                    Gf+vam +++h+R+ vaa+a+glarra++ea++ya++rk+ g p++ hq+v++++a+ma  +ea r+lv + a+ +d+g+++++ asmaK+fa ++
     KOO22622.1 769 GFKVAMGAFDHTRPPVAAGAVGLARRAMDEAIAYAKERKTMGVPIAHHQAVSFMIADMAMGIEAGRCLVHKSAWEIDQGRKNTMFASMAKAFAGDH 864
                    9*********************************************************************************************** PP

                    HHHHHHHHHHHHGGGTTSGGGHHHHHHHHTHHHHHSSS-HHHHHHHHHHHH CS
  Acyl-CoA_dh_1  99 aqevadlamqllGgaGyleeypverlyrdarvlrigeGtseiqrniiarrl 149
                    a++va++a+q++Gg+G+++eypve+l+rda++++i+eGts+iqr+ii+r +
     KOO22622.1 865 ANKVAADAVQIFGGNGFNTEYPVEKLMRDAKIYQIYEGTSQIQRLIISREI 915
                    ************************************************987 PP

>> Acyl-CoA_dh_N  Acyl-CoA dehydrogenase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.0       4.1   3.7e+03      11      51 ..     478     521 ..     475     541 .. 0.74
   2 !   89.3   0.1   2.9e-28   2.6e-25       1     110 [.     544     652 ..     544     654 .. 0.95

  Alignments for each domain:
  == domain 1  score: -1.4 bits;  conditional E-value: 4.1
                    HHHHHHHHT.HHHHHHHHHHT.SGHHHHHHHH.HHTTCTSTTS- CS
  Acyl-CoA_dh_N  11 vrefaeeel.aphaaewdeeg.efprelwkkl.aelGllgitvp 51 
                    +++ + +e+  p   e de + +  r++ k++  +lG ++ t+p
     KOO22622.1 478 ANACVGREVaTPIPLEPDEPHvKLARQAAKAMrDALGPFAPTIP 521
                    66677777767889999988888889999999445899999998 PP

  == domain 2  score: 89.3 bits;  conditional E-value: 2.9e-28
                    THHHHHHHHHHHHHHHHHTHHHHHHHHHHTSGHHHHHHHHHHTTCTSTTS-GGGTS--S-HHHHHHHHHHHHHH-HHHHHHHHHHHHTTHHHHHHH CS
  Acyl-CoA_dh_N   1 teeqealrdtvrefaeeelaphaaewdeegefprelwkklaelGllgitvpeeygGagldyleaaivaeelaradaglalllgvhsslvapailrf 96 
                    ++eq al++ +r+fa +e+ p+aa++d++ efp+++++k+ elGl++ +vpe+ gG+gl+ +e +i+ eela++++g+ +++ + ++l++ +++  
     KOO22622.1 544 SDEQNALKELARSFALNEMIPVAAKYDKTMEFPQDVFEKAWELGLVNTHVPEDCGGLGLGCFEGVIIGEELAYGCTGIMTAMEA-NGLASAPVILA 638
                    69*************************999***********************************************9888877.7899899**** PP

                    S-HHHHHHHHHHHH CS
  Acyl-CoA_dh_N  97 GteeqkrryLpkla 110
                    Gt eqk++yL +l 
     KOO22622.1 639 GTTEQKKKYLGRLT 652
                    **********9986 PP

>> Acyl-CoA_dh_M  Acyl-CoA dehydrogenase, middle domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   89.3   0.3   1.6e-28   1.5e-25       1      97 []     659     755 ..     659     755 .. 0.91

  Alignments for each domain:
  == domain 1  score: 89.3 bits;  conditional E-value: 1.6e-28
                    EEE---SS-SS-GGG---EEEEETT.EEEEEEEEEEEETTTT-SEEEEEEETS---.----EEEEEEE..GGGEEE-----BSS-TTS-EEEEEEE CS
  Acyl-CoA_dh_M   1 afalTEpqaGsdvasvkttaaerdggeyvlnGeKiwitnaaiatlalvlartekpd.rarglslflvprdapgvsvrrieeklGlrglptgelvfe 95 
                    a+++TEp+aGsdva+ ktta  ++g+++vlnG+K+witn++ a++++vla+t+ ++ +   ++ f+v++d+pg++v+r+e ++G+r  +t  ++fe
     KOO22622.1 659 AYGVTEPGAGSDVAGAKTTA-VKKGDSWVLNGQKMWITNGGVANWFFVLAKTDPTKnAGSAFTGFIVDADTPGITVGRKEINMGQRCSDTRGITFE 753
                    689***************55.555668************************6666667899*********************************** PP

                    .. CS
  Acyl-CoA_dh_M  96 dv 97 
                    dv
     KOO22622.1 754 DV 755
                    97 PP

>> Amino_oxidase  Flavin containing amine oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   86.2   0.1   3.3e-27   2.9e-24       3     450 ..      33     480 ..      31     482 .. 0.70

  Alignments for each domain:
  == domain 1  score: 86.2 bits;  conditional E-value: 3.3e-27
                    HHHHHHHHHHTT.EEEEEEESSSSSBTTS-EEEET..TEEEESS--EEETTTHHHHHHHHHTTCCCCEEEESCCGCEEEEETTEECC....TTEEC CS
  Amino_oxidase   3 GLaaArqLlsaG.fdVtvlEardrvGGRirtvrsd..GylielGamwftgagnpllellkelgledslslpdpgapkrvlskggref....pgdls 91 
                    GL+aA+qL+ +  ++V+++ a +rvGG +r   +   G  +e G + f   ++++++l++elgl+ ++++  ++ +    s +g e+     +d +
     KOO22622.1  33 GLSAAHQLSKQPgVEVVLIDAAPRVGGLVRDGFKTagGRRAEAGQHGFWSEYHNIFALVDELGLNADDVFTQYA-EQGQYSPKGLEAiwpvFKDQP 127
                    ********77766*****************9888899********************************99999.333334444444888766666 PP

                    HHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHTSTT..TTCBH CS
  Amino_oxidase  92 pvpaewealleqgalsaellsleeklrlgleallqktldeldldskslaesleelgrrepgdvevwdrliepelfaklefasglfagdp..selsa 185
                    ++p ++++ l      +++l+l+    ++ ++l  ++++  ++d+  ++   + ++r+      v +rl+e e+f+ + + + +  g     ++ +
     KOO22622.1 128 RLPTGLAQGLY-----TKFLNLPPTDLATAAPLVAAFSELDFNDEAIMKRYDRMTFRDLCARMGVSSRLYE-EAFEPMILTGLFAPGTQvsAAAAM 217
                    66777777777.....4444454444444444443333333333333333333333333333333444444.344444444333333335566677 PP

                    HHHTCCCCHHHHHTSCCCEETTH......THHHHHHHHHTTTTEEEETSEEEEEEEEETTC...EEEEETTSTEEEESEEEE-S-HHHHH.SSEEE CS
  Amino_oxidase 186 klalpllwelegfggslllprgG......lsqlpealaeelrgldirlntrVkeikregdg...vtvtledgevveaDaVvvTvplgvlk.ailfs 271
                    ++a++ +++ +g  +  + ++ G      ++    +la+  rg+++r + rV ++  +++     +++l+dg+ +eaD Vv++v +++l+     s
     KOO22622.1 218 GMAYFFVLKSQGAFDVRW-CK-GdvgellFDPWLAQLAA--RGVELRAGVRVAQLVPSASAkriEALELSDGSRIEADEVVLAVGVSALRgLAASS 309
                    777777777777776644.33.33335556777778887..****************555546799999*********************777777 PP

                    SCC.SHHHHHHHHHSEEEEEEEEEEEESSGGSGCSTS.E.CECECCCEEETTTEEEEECCECCC.STTTEEEEEEEEECHHHHHHHTTS-HHHHHH CS
  Amino_oxidase 272 Ppl.pdekaeairnlgfgsvnkvilefdrkfwednal.g.qgvlvseltttlgeafissdfpsr.appgkglvllvyvggdaaneleslsdeelvq 363
                    P l     +  + +l  + +  + l+fd ++ ++ +     g +++ +tt  + ++i    p   + pg ++  + + +  a+  l   sd +lv+
     KOO22622.1 310 PMLaATREFGGFTRLRGTDCLAIRLWFDSPVTLPYSAnPaWGFEEGTGTTFFDLRAIQ--APKFdDEPGAVI-EIDFYNSAAMLAL---SDADLVE 399
                    777666999999999****************666553111223333333333333333..444405555555.8888887776666...******* PP

                    HHHHHHHHHHTGTSSTCSEEEEEECCTETTTSSSEEE.BTTHHHHHHHHHHCHHCSTTEEE.SGGGCTTTTTS.HHHHHHHHHHHHHH CS
  Amino_oxidase 364 avlrdLrklfgeevpepkatlvtrWhtdplargsysyvsvgpghedydplakpegdprlffAGehtsreypgt.vegAilSGlraAar 450
                    ++  +L+ +++  +    ++l +   + p++  +     + pg++ + p  ++    ++ ++G+++ +++ +   e+A+ +G +aA++
     KOO22622.1 400 RAHGHLKAIVP--ALRNAKVLDSAVVRLPNS-VT----WFSPGSYPLLPATRSTAFENVKYCGDYVRSSHGSWsQEKAYVTGMEAANA 480
                    ***********..444444555555333444.22....4677789999999999********************************97 PP

>> Acyl-CoA_dh_2  Acyl-CoA dehydrogenase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   72.0   2.0   6.3e-23   5.6e-20       3     133 ..     784     904 ..     783     905 .. 0.97

  Alignments for each domain:
  == domain 1  score: 72.0 bits;  conditional E-value: 6.3e-23
                    HHHHHHHHHHHHHHHHHHHHHHHHCTTT-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT----HHHHHHHHHHHHHHHHHHHHHH CS
  Acyl-CoA_dh_2   3 iaavalGaAraalaefvelarervrassgekladdpatqlalaeaaarldAAralleraaaraealaaagkevtvedraearraaalavelaiaav 98 
                    +aa a+G+Ar+a++e++++a+er++   g+++a ++a+ + +a++a+ ++A r l+++ a++    +++g+++    +  a++a+a+a + a +++
     KOO22622.1 784 VAAGAVGLARRAMDEAIAYAKERKT--MGVPIAHHQAVSFMIADMAMGIEAGRCLVHKSAWE----IDQGRKN----TMFASMAKAFAGDHANKVA 869
                    6899*********************..9**********************************....9999998....8899*************** PP

                    HHHHHHCGGGGGBTT-HHHHHHHHHHHHCTSGGG- CS
  Acyl-CoA_dh_2  99 dalfeaaGgsalrkesplqRlwRDahaaaaHaaln 133
                     ++++++Gg++  +e+p++ l+RDa++ +++++++
     KOO22622.1 870 ADAVQIFGGNGFNTEYPVEKLMRDAKIYQIYEGTS 904
                    *******************************9986 PP

>> NAD_binding_8  NAD(P)-binding Rossmann-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.5   0.6     2e-16   1.8e-13       1      68 []      26      94 ..      26      94 .. 0.94
   2 ?   -1.7   0.0       3.9   3.5e+03      22      33 ..     577     588 ..     565     595 .. 0.76

  Alignments for each domain:
  == domain 1  score: 50.5 bits;  conditional E-value: 2e-16
                   EE--SHHHHHHHHHHHCC.TEEEEEE-SSSSSSGGG-EE..CETTCEECTS---EEETTHHHHCHHHHCCC CS
  NAD_binding_8  1 IvGaGlsGlvaAylLaka.gfdvlllekrdrlGGraasy..evpgvrvdygahifhgsgyypnvrrllrel 68
                   +vGaG +Gl+aA+ L+k+ g++v+l+++++r+GG +++   + +g+r++ g h f++  +y+n+++l++el
     KOO22622.1 26 VVGAGWGGLSAAHQLSKQpGVEVVLIDAAPRVGGLVRDGfkTAGGRRAEAGQHGFWS--EYHNIFALVDEL 94
                   8****************99******************99645599************..7********997 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 3.9
                    EEEE-SSSSSSG CS
  NAD_binding_8  22 vlllekrdrlGG 33 
                     +++ek++ lG 
     KOO22622.1 577 QDVFEKAWELGL 588
                    589******995 PP

>> Pyr_redox_2  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.9   0.1     1e-07   8.9e-05       2      36 ..      23      55 ..      22     108 .. 0.79
   2 !   18.4   0.0   1.1e-06     0.001     191     241 ..     250     303 ..     243     320 .. 0.88

  Alignments for each domain:
  == domain 1  score: 21.9 bits;  conditional E-value: 1e-07
                 SEEEE--SHHHHHHHHHHHHH.TS-EEEEETTHCHH CS
                 xxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxx RF
  Pyr_redox_2  2 dvvviGgGpAGlaaaltlaqa.gakvtlvelegtcl 36
                 +v+v+G+G++Gl+aa++l+++ g++v+l++   + +
   KOO22622.1 23 KVAVVGAGWGGLSAAHQLSKQpGVEVVLID---AAP 55
                 79******************55*******4...233 PP

  == domain 2  score: 18.4 bits;  conditional E-value: 1.1e-06
                  HHHHHTTEEEEESCEEEEEEETTE..EEE.EEETTSCEEEESEEEE-S-EEES- CS
                  xxxxxxxxxxxxxxxxxxxxxxxx..xxx.xxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2 191 ealekeGvevklgtsvkeidgnge..kle.vvledgeeidadlvvvavGvrpst 241
                  ++l ++Gve++ g +v ++ +  +  ++e ++l+dg++i+ad vv+avGv++ +
   KOO22622.1 250 AQLAARGVELRAGVRVAQLVPSASakRIEaLELSDGSRIEADEVVLAVGVSALR 303
                  578999****************9988788*********************9865 PP

>> DAO  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.1   6.5   3.2e-09   2.9e-06       1     207 [.      23     302 ..      23     323 .. 0.63
   2 ?   -1.3   0.0       1.5   1.3e+03     263     321 ..     480     536 ..     413     566 .. 0.65

  Alignments for each domain:
  == domain 1  score: 27.1 bits;  conditional E-value: 3.2e-09
                 EEEEECTSHHHHHHHHHHHHTT...EEEEESSSSTT.......SSGGGSSEEEE.ESSSSTHHSTHHHH.HHHHHHHHHHHHHHHHHSSTTSEEEEEEE CS
         DAO   1 dvviiGGGiiGlstAyeLarrg...Vtllekgdiag.......sgaSgrnsgll.hsglrylpeasela.rlslealeelreleeelgididyrrtGll 87 
                 +v+++G+G  Gls+A++L++++   V+l+++++++g       + a gr +    h+ ++++ +  +l+ +l l a + + +++e+     +y ++Gl 
  KOO22622.1  23 KVAVVGAGWGGLSAAHQLSKQPgveVVLIDAAPRVGglvrdgfKTAGGRRAEAGqHGFWSEYHNIFALVdELGLNADDVFTQYAEQ----GQYSPKGLE 117
                 59*****************9955*********998733333332333333322213333333322233334444444444444443....345554443 PP

                 EEESS...........................................HHHHHHHHHHHHHH......HHTTTTEEEEEHHHHHHHSTTSTTTSEEEEE CS
         DAO  88 slaad...........................................eeelealdkllall......leagldaelldaeevrelepalpgllgalfy 137
                  +                                                  ea+ k++++       ++ g+ ++l ++    + ep    +l +lf 
  KOO22622.1 118 AIW-PvfkdqprlptglaqglytkflnlpptdlataaplvaafseldfN--DEAIMKRYDRMtfrdlcARMGVSSRLYEE----AFEP---MILTGLFA 206
                 332.133446666666666777777777777777777777666666431..34445777777443333445554443333....4556...67899*** PP

                 TTEEEEEHHHHHHH...........................HHHHHHHTT-EEEESECEEEEEEEE...TCEEEEEEECTEEEEEEEEEEE--GGGHHH CS
         DAO 138 pdtgqvdpakltaa...........................laraaealGveilegtevtgleeed...gkvwgverttpgendaadavVnaaGawsdl 206
                 p+t +  +a++  a                            +++++a+Gve++ g +v  l  ++   +++  + + ++g++ +ad vV+a G+ +  
  KOO22622.1 207 PGTQVSAAAAMGMAyffvlksqgafdvrwckgdvgellfdpWLAQLAARGVELRAGVRVAQL-VPSasaKRIEAL-ELSDGSRIEADEVVLAVGVSA-- 301
                 **6665555555559**************************77777799************9.333234677777.333488755688******996.. PP

                 H CS
         DAO 207 l 207
                 l
  KOO22622.1 302 L 302
                 4 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 1.5
                 EEEEESSEEETTCSSTSCSHHHHHHHHHHHHHHSGGGCGEEEEEEEEEE.ETTSSEEEEE CS
         DAO 263 vlvGgtadeesgdddpevdeedidellealrklfPqlgdvlrkwaGlrp.lpdglplige 321
                  +vG    e +++ ++e+de ++   ++a++++  +lg++  +  Gl+  ++d++ + g 
  KOO22622.1 480 ACVGR---EVATPIPLEPDEPHVKLARQAAKAMRDALGPFAPTIPGLLSaTVDDDEFAGA 536
                 33333...3455555666666666666666666666666666666666644555555444 PP

>> HI0933_like  HI0933-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.9   0.6   1.9e-05     0.017       2      36 ..      23      58 ..      22      71 .. 0.92
   2 !   11.7   0.0   8.4e-05     0.076     107     184 ..     240     319 ..     232     322 .. 0.81
   3 ?   -2.8   0.0       2.2     2e+03     167     200 ..     760     794 ..     741     819 .. 0.74

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 1.9e-05
                 SEEEE--SHHHHHHHHHH.HHTT--EEEE-SSSSS- CS
  HI0933_like  2 dviviGgGaAGlmaAisa.akrgkrVlllekakklg 36
                 +v+v+G+G  Gl aA ++ ++ g +V+l+++a+++g
   KOO22622.1 23 KVAVVGAGWGGLSAAHQLsKQPGVEVVLIDAAPRVG 58
                 79***************98899**********9998 PP

  == domain 2  score: 11.7 bits;  conditional E-value: 8.4e-05
                  -CHHHHHHHHHHHHHHT-EEE-S--EEEE..ECETTE.EEEEE.TTEEEEESEEEE----SS-GGGT--SHHHHHHHHTT CS
  HI0933_like 107 kaedivdallkelkeagvklrletevksv..ekeedgkfrvktkseeeleadklvlAtGGlSiPklGstgkgyklaeqfg 184
                    e + d +l++l ++gv+lr   +v+++  +++++++  +++++++++ead++vlA+G  ++  l ++  +    ++fg
   KOO22622.1 240 VGELLFDPWLAQLAARGVELRAGVRVAQLvpSASAKRIEALELSDGSRIEADEVVLAVGVSALRGLAASSPMLAATREFG 319
                  55667889********************95555566666777899**************999888888777777766665 PP

  == domain 3  score: -2.8 bits;  conditional E-value: 2.2
                  -GGGT--SHHHHHHH.HTT--EEEEEEES--EE-- CS
  HI0933_like 167 iPklGstgkgyklae.qfghtivplrpalvpltlk 200
                  +  lG++g+g+k+a  +f+ht  p+ ++ v+l  +
   KOO22622.1 760 ANVLGAEGFGFKVAMgAFDHTRPPVAAGAVGLARR 794
                  5569********99647999999999999988755 PP

>> NAD_binding_9  FAD-NAD(P)-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.8   0.2    0.0004      0.36       1      41 [.      25      60 ..      25      68 .. 0.87
   2 ?   -2.8   0.0         6   5.4e+03      84     113 ..     158     187 ..     145     194 .. 0.79
   3 !   11.2   0.0   0.00031      0.28     104     155 ..     245     299 ..     234     300 .. 0.71

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.0004
  NAD_binding_9  1 aivGaGprGlavlerLlarakkkspleitlfdpsepgagrv 41
                   a+vGaG  Gl+++ +L ++      +e+ l+d ++   g+ 
     KOO22622.1 25 AVVGAGWGGLSAAHQLSKQ----PGVEVVLIDAAPRV-GGL 60
                   89****************9....59********9986.444 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 6
  NAD_binding_9  84 eldpddfvpRalyGrYlrdlfeellarlpe 113
                    ++++ df   a++ rY r +f++l+ar+  
     KOO22622.1 158 AFSELDFNDEAIMKRYDRMTFRDLCARMGV 187
                    56777888889999**********999854 PP

  == domain 3  score: 11.2 bits;  conditional E-value: 0.00031
  NAD_binding_9 104 feellarl.pegvtvevhra.evvdleeradgq...avlladgaslaadaVvLAlGh 155
                    f+ +la+l  +g  ve+  + +v +l ++a+     a+ l+dg++++ad+VvLA+G 
     KOO22622.1 245 FDPWLAQLaARG--VELRAGvRVAQLVPSASAKrieALELSDGSRIEADEVVLAVGV 299
                    666666663334..44433337777777775532347899***************95 PP

>> Thi4  Thi4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.8   0.4     1e-07     9e-05      18      55 ..      22      59 ..      15      68 .. 0.89

  Alignments for each domain:
  == domain 1  score: 21.8 bits;  conditional E-value: 1e-07
                EEEEEE--SHHHHHHHHHHHHCTTS-EEEEESSSS--T CS
        Thi4 18 sDvvivGaGssGLtaayylakkpdlkvailersvspGG 55
                  v++vGaG  GL+aa+ l+k+p+++v+++++   +GG
  KOO22622.1 22 LKVAVVGAGWGGLSAAHQLSKQPGVEVVLIDAAPRVGG 59
                5799***************************9988888 PP

>> FAD_oxidored  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.5   0.2   5.8e-07   0.00052       2      65 ..      24      86 ..      23     127 .. 0.81

  Alignments for each domain:
  == domain 1  score: 19.5 bits;  conditional E-value: 5.8e-07
  FAD_oxidored  2 vvVvGGgpaGvaAAiaAara.GakvlLveergvlGGlltsglvatdignkaeeqvvtgiarefle 65
                  v VvG+g +G+ AA +  ++ G +v+L++  +++GGl+  g   t  g + +e+ ++g++ e+++
    KOO22622.1 24 VAVVGAGWGGLSAAHQLSKQpGVEVVLIDAAPRVGGLVRDGF-KTAGGRR-AEAGQHGFWSEYHN 86
                  89*************976555***************998777.5555544.55688888888765 PP

>> HpaB_N  4-hydroxyphenylacetate 3-hydroxylase N terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   0.1   4.6e-06    0.0041     180     236 ..     686     740 ..     675     763 .. 0.75

  Alignments for each domain:
  == domain 1  score: 16.8 bits;  conditional E-value: 4.6e-06
                 EEEEEEEEEE-.--SSEEEE---SS-..TTSGGG-EEEEEETT-TTEEEEE------ CS
      HpaB_N 180 vVrGakvlaTgaaladeilvlptramlkeedkdyavafavpvdapGlklicresfed 236
                 v +G k+ +T++ +a++++vl    + +++       f+v +d+pG+++  r++ ++
  KOO22622.1 686 VLNGQKMWITNGGVANWFFVLAKTDP-TKNAGSAFTGFIVDADTPGITVG-RKEINM 740
                 789********************999.888888889***********964.444443 PP

>> GIDA  Glucose inhibited division protein A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.9   1.1   4.7e-05     0.042       1      28 [.      23      51 ..      23      71 .. 0.83
   2 ?    1.3   0.0      0.16   1.4e+02     118     150 ..     265     299 ..     254     320 .. 0.84

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 4.7e-05
                CEEEE-SSHHHHHHHHHHHHT.T--EEEE CS
        GIDA  1 dviViGgGhAGceAAlaaarl.GakvlLi 28
                +v V+G+G+ G+ AA ++++  G++v+Li
  KOO22622.1 23 KVAVVGAGWGGLSAAHQLSKQpGVEVVLI 51
                699**************97654******9 PP

  == domain 2  score: 1.3 bits;  conditional E-value: 0.16
                 EEEEEECT..TEEEEEEETTS-EEEECEEEE--TT CS
        GIDA 118 veelivee..kkvkgvvtedgetikakavviatGt 150
                 v++l+++   k+++++ ++dg+ i+a+ vv+a G 
  KOO22622.1 265 VAQLVPSAsaKRIEALELSDGSRIEADEVVLAVGV 299
                 666766556799*********************96 PP

>> FAD_binding_2  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   2.2   3.6e-06    0.0032       2      36 ..      24      59 ..      23      70 .. 0.89
   2 ?   -2.8   0.0       2.8   2.5e+03     146     200 ..     247     298 ..     241     301 .. 0.68

  Alignments for each domain:
  == domain 1  score: 16.6 bits;  conditional E-value: 3.6e-06
                   EEEE--SHHHHHHHHHHHHTTT.-EEEEESSSGGGS CS
  FAD_binding_2  2 viViGsGlAGLaAAleaaeaGl.kvavvekeqefgg 36
                   v V+G+G +GL+AA++++++   +v++++ ++++gg
     KOO22622.1 24 VAVVGAGWGGLSAAHQLSKQPGvEVVLIDAAPRVGG 59
                   89****************96555********99987 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 2.8
                    HHHHHHHTCTEEEEESEEEEEEEECTT..EEEEEEEEETTTTCEEEEEESEEEE--- CS
  FAD_binding_2 146 rlvesarkagvdfqerteadeLivedg..rvtGavvenpesgrevrirakavvlatg 200
                    + ++++ ++gv++++  ++++L+      r+   +++        ri+a+ vvla g
     KOO22622.1 247 PWLAQLAARGVELRAGVRVAQLVPSASakRIEALELS-----DGSRIEADEVVLAVG 298
                    5677888899999999999999773332344444443.....444677999999865 PP

>> FAD_binding_3  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.8   1.2e-05     0.011       3      32 ..      23      53 ..      21      62 .. 0.90
   2 ?   -0.9   0.0      0.83   7.5e+02     300     320 ..     535     555 ..     533     558 .. 0.90

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 1.2e-05
                   EEEEE--SHHHHHHHHHHHHT.THHEEEEES CS
  FAD_binding_3  3 dVlIVGaGpaGlmlallLsea.Gvrvvlvek 32
                   +V++VGaG  Gl++a+ Ls++ Gv+vvl++ 
     KOO22622.1 23 KVAVVGAGWGGLSAAHQLSKQpGVEVVLIDA 53
                   8*****************9877*******97 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 0.83
                    TSHHHHHHHHHHHHHHHHHHH CS
  FAD_binding_3 300 gGqGlNtaiqDavnLawkLaa 320
                    g+ G N+a++D  n  + La 
     KOO22622.1 535 GARGYNLALSDEQNALKELAR 555
                    899*************99995 PP

>> Lycopene_cycl  Lycopene cyclase protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.7   6.3e-06    0.0056       2      36 ..      24      57 ..      23      61 .. 0.94
   2 ?   -2.8   0.1       2.8   2.6e+03     110     143 ..     266     301 ..     250     311 .. 0.63

  Alignments for each domain:
  == domain 1  score: 15.8 bits;  conditional E-value: 6.3e-06
  Lycopene_cycl  2 vvviGaGpAglslAarlteakpglkvvlieaspsl 36
                   v+v+GaG  gls A++l +++pg++vvli+a+p +
     KOO22622.1 24 VAVVGAGWGGLSAAHQL-SKQPGVEVVLIDAAPRV 57
                   89***************.999**********9976 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 2.8
  Lycopene_cycl 110 esveeeeages..lvvleggrkirarlvvdarglas 143
                    ++ +++  +++     l++g +i+a  vv a g+ +
     KOO22622.1 266 AQLVPSASAKRieALELSDGSRIEADEVVLAVGVSA 301
                    444444443331145678999999999999998544 PP

>> Pyr_redox  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.2   0.00024      0.22       1      35 [.      23      58 ..      23      67 .. 0.91
   2 ?   -0.1   0.0       1.6   1.5e+03      48      72 ..     250     274 ..     244     285 .. 0.78

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 0.00024
                EEEEECSSHHHHHHHHHHHH.TTSEEEEEESSSSSS CS
   Pyr_redox  1 kvvvvGgGyiglElAgalae.lgkkVtvversdkll 35
                kv+vvG+G+ gl +A  l++  g +V ++++++++ 
  KOO22622.1 23 KVAVVGAGWGGLSAAHQLSKqPGVEVVLIDAAPRVG 58
                79****************7769**********9987 PP

  == domain 2  score: -0.1 bits;  conditional E-value: 1.6
                 HHHHHTTEEEECSEEEEEEEEETTS CS
   Pyr_redox  48 eklekngievllntkveeiegsedg 72 
                  +l ++g+e++ + +v++++ s++ 
  KOO22622.1 250 AQLAARGVELRAGVRVAQLVPSASA 274
                 689999*************988773 PP

>> ApbA  Ketopantoate reductase PanE/ApbA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   0.3   0.00056       0.5       1      47 [.      24      71 ..      24      87 .. 0.88
   2 ?   -2.2   0.0       3.2   2.9e+03      46      88 ..     679     719 ..     672     726 .. 0.76

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.00056
                EEEES-SHHHHHHHHHHHH.HTHCEEEE-SCHHHHHHHHHCEEEEETT CS
        ApbA  1 iailGaGaiGsllaakLak.agadvtlilrsrrlealkknGlrltseg 47
                +a++GaG  G   a++L+k  g +v+li+  +r+  l+++G++  + +
  KOO22622.1 24 VAVVGAGWGGLSAAHQLSKqPGVEVVLIDAAPRVGGLVRDGFKTAGGR 71
                69***************999***********99999999999876655 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 3.2
                 TT.CEEEEEECEEECCHSCCCCS-ESEEEE-SSGGGHHHHHHHH CS
        ApbA  46 eg.geeilrppealsaeekselepidlvivtvKayqteealeei 88 
                 ++ g+  +++ ++++ +   +++ + +++v  K+ +t++a +++
  KOO22622.1 679 VKkGDSWVLNGQKMWIT---NGGVANWFFVLAKTDPTKNAGSAF 719
                 55577777777777788...899999**********99987765 PP

>> 3HCDH_N  3-hydroxyacyl-CoA dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.2    0.0003      0.27       1      34 [.      23      57 ..      23      85 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.0003
                EEEEE--SCCHHHHHHHHHHT.T-EEEEE-S-HHH CS
     3HCDH_N  1 kvaviGaGtmGagiaavfasa.gleVvlvdiseea 34
                kvav+GaG  G + a+++ ++ g+eVvl+d +++ 
  KOO22622.1 23 KVAVVGAGWGGLSAAHQLSKQpGVEVVLIDAAPRV 57
                79**************999999********98765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (925 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       338  (0.0188521); expected 358.6 (0.02)
Passed bias filter:                      306  (0.0170673); expected 358.6 (0.02)
Passed Vit filter:                        53  (0.0029561); expected 17.9 (0.001)
Passed Fwd filter:                        20  (0.00111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              20  [number of targets reported over threshold]
# CPU time: 0.70u 0.26s 00:00:00.96 Elapsed: 00:00:00.42
# Mc/sec: 6649.79
//
Query:       KOO22623.1  [L=277]
Description: gda2 protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.2e-28   99.5   0.0    3.9e-28   97.9   0.0    1.9  1  Dev_Cell_Death  Development and cell death domain
    2.5e-05   24.6   1.2    4.8e-05   23.7   1.2    1.5  1  HMG_box         HMG (high mobility group) box
  ------ inclusion threshold ------
      0.019   15.6   0.9      0.048   14.3   0.9    1.7  1  HMG_box_2       HMG-box domain


Domain annotation for each model (and alignments):
>> Dev_Cell_Death  Development and cell death domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   97.9   0.0   6.6e-32   3.9e-28       2     127 .]     104     254 ..     103     254 .. 0.92

  Alignments for each domain:
  == domain 1  score: 97.9 bits;  conditional E-value: 6.6e-32
  Dev_Cell_Death   2 gvificnketkkecfrkklfglpaeklslvkkikpglk........LfLfdyderkLyGvfeAasdGglniepkafts................. 71 
                     g+if+++++t +ec++++lfglp+++  lv  i++  +        LfLf++++r+L+Gvf A+  +g+ ++ +a+ +                 
      KOO22623.1 104 GAIFGATNTTLDECLQRNLFGLPHTRRALVAAISKQHEtpslpppvLFLFNFQKRELHGVFAASGPAGFPLHADAWVKgswstelggpmakppra 198
                     99*******************************8754222333455******************************999**************** PP

  Dev_Cell_Death  72 ...ekskfpaQvrfkikkkckPLaesefkeaikenykekekkfrfeLsekqvkkLlslf 127
                        ++++fpaQ+ ++    + PLae+ f++++  +y++ ++kf++ Ls +qv++L+ lf
      KOO22623.1 199 tskHTTQFPAQIPVERLHVFAPLAETVFRHVM--KYHS-QNKFDLSLSAEQVEQLVCLF 254
                     **999**************************8..5774.59***************998 PP

>> HMG_box  HMG (high mobility group) box
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.7   1.2   8.1e-09   4.8e-05      30      69 .]       5      44 ..       1      44 [. 0.91

  Alignments for each domain:
  == domain 1  score: 23.7 bits;  conditional E-value: 8.1e-09
                HHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
     HMG_box 30 eiskklgekWkalseeeKkkYeekaekekaryekekpeyk 69
                + ++ + e+W  l+e++K++++++a+++ +ry++++++y+
  KOO22623.1  5 AMNRLINEEWARLNEAAKAPFKAQAQADVERYKAAIQRYE 44
                6677899*******************************95 PP

>> HMG_box_2  HMG-box domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   0.9     8e-06     0.048      37      72 ..       8      43 ..       3      44 .. 0.89

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 8e-06
                GGGHHHHHHS-HHHHHHHHHHHHHHHHHHHH-SS-- CS
   HMG_box_2 37 klcsekWkalseeeKekYeekAkedkkrydrealty 72
                +l+ e+W+ l+e+ K +++ +A++d +ry++  ++y
  KOO22623.1  8 RLINEEWARLNEAAKAPFKAQAQADVERYKAAIQRY 43
                6789*************************9877766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (277 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       584  (0.0325729); expected 358.6 (0.02)
Passed bias filter:                      393  (0.0219198); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.44u 0.25s 00:00:00.69 Elapsed: 00:00:00.40
# Mc/sec: 2057.58
//
Query:       KOO22624.1  [L=610]
Description: glucose 6-phosphate-1-dehydrogenase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.4e-84  283.8   0.0    1.9e-84  283.3   0.0    1.1  1  G6PD_C     Glucose-6-phosphate dehydrogenase, C-terminal doma
    1.8e-47  162.3   0.0    3.1e-47  161.5   0.0    1.4  1  G6PD_N     Glucose-6-phosphate dehydrogenase, NAD binding dom
      7e-07   29.6   0.3    2.2e-06   28.0   0.3    1.9  2  EF-hand_7  EF-hand domain pair
    7.6e-07   28.2   0.5    6.5e-06   25.3   0.1    2.7  3  EF-hand_1  EF hand
      5e-06   26.0   0.2    4.6e-05   23.0   0.2    2.5  2  EF-hand_6  EF-hand domain
    0.00016   21.0   0.1    0.00045   19.6   0.1    1.8  1  EF-hand_5  EF hand
  ------ inclusion threshold ------
      0.031   14.1   0.1       0.12   12.2   0.0    2.0  2  EF-hand_8  EF-hand domain pair


Domain annotation for each model (and alignments):
>> G6PD_C  Glucose-6-phosphate dehydrogenase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  283.3   0.0   7.2e-88   1.9e-84       2     271 ..     190     469 ..     189     490 .. 0.90

  Alignments for each domain:
  == domain 1  score: 283.3 bits;  conditional E-value: 7.2e-88
                 HHHHS-STTSTTSSTTTEEEEEEEEEESS--TTTHHHHTTTHHHHHTTTTHHHHHHHHHH----SSSSHHHHHHHHHHHHTTB----G...GG...... CS
      G6PD_C   2 vlRfaNalfeplwnrnyidhvqitvketlgvegrggYydeaGalrDvvqnHllqllalvamepPasldaedirdekvkvLkslrplkleevek.....k 95 
                 +lR aN++fep+w+r+yi++vq+t+ke+lg+ grggY+d++G++rD++qnHllq ++ +amepP+ ++a +i ++kv +L+s+++l l + +      +
  KOO22624.1 190 TLRWANQIFEPVWSRQYIESVQLTFKEDLGTAGRGGYFDSVGIIRDIIQNHLLQAFMWLAMEPPTAMSAAEIVKAKVSLLRSVSTLYLGDGDGgggfgS 288
                 59************************************************************************************9977653222336 PP

                 EEEEEE.....E--TGS-STTSTTS-TT----SEEEEEEEB-STTTTT-EEEEEEESSBSS-EEEEEEEE---SS-SS..---.--EEEEEEESS-EEE CS
      G6PD_C  96 vvrGqYaagavkgkevkgYreeegvakdSkteTfvalkleidnerwagVPfylrtGKrLnekkteiriqfkkvpsdlf..kkkerneLviriqpdeais 192
                 v++GqY    +++ +++gY+++++v++ S+++Tf+a++le++++rw+gVPf++ +GK ++e+++e r++fk+ p++ +     ++neLv+riqpdea++
  KOO22624.1 289 VFLGQY----SRHGDEPGYLDDKTVPAGSTCPTFAACVLEVNTARWRGVPFLFTAGKGMDERVCELRVRFKPQPHNAMmgIVGHQNELVMRIQPDEALY 383
                 9*****....667789***********************************************************999543334*************** PP

                 EEEEEE-SSS..E.....EEEEEEHHHHTT...---HHHHHHHHHHHT-GTTSB-HHHHHHHHHHHHHHHHHHHH..---EEEETT CS
      G6PD_C 193 lklnakkpgl..eleleeveldlsykerfk...lpeaYerLlldvlkgdqtlFvrsdeveaaWkivdpileawee..eklekYeag 271
                 +   ak+pg   e   ++v +d+sy+++f+   l +aYer++l++ +gdq+lFv++ e+ +aW+i++p+l++++e  +++   ++g
  KOO22624.1 384 IISVAKEPGItaEQVRKPVVMDMSYAQQFTgayLGDAYERMFLNCARGDQSLFVSEAELFEAWRIFTPLLHEIDErrPQPVRHPFG 469
                 *********965444569************99999**************************************9987445444444 PP

>> G6PD_N  Glucose-6-phosphate dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  161.5   0.0   1.2e-50   3.1e-47       1     177 []       8     187 ..       8     187 .. 0.93

  Alignments for each domain:
  == domain 1  score: 161.5 bits;  conditional E-value: 1.2e-50
      G6PD_N   1 vifGasGdLakrkllPaLyelaregllpeevrivgvarsklsdeefrekvkealkkekekeeldeekleeflkrleyvsgdleeeeeyekLkekleele 99 
                 vifGa+GdLak+kl+PaLy+l  +++lp+++ ivg++rs+++  ef +k  + +k++       + + + f++r+++++g ++e+e+y++L++ + e e
  KOO22624.1   8 VIFGATGDLAKKKLFPALYQLCLHKHLPRSLDIVGYGRSDVNLPEFINKQCAGIKEDP------QYAKHLFTSRIRFHAGGYDEDESYARLAASICEYE 100
                 8***********************************************9999994322......235677**************************999 PP

      G6PD_N 100 ....a.....nrlfYlavppslfeevaeklkkaglakeeewkrvvvEKPfGkdlesarelneelkkvfkeeqiyrIDhYLGketvqN 177
                     a     nrl++l+vpps+f++v+++++k+g a + +++r+++EKPfG+d  + +eln+  +++f+e+q++r+DhYLGke++ N
  KOO22624.1 101 atqpAangigNRLYFLSVPPSVFGAVVDAVSKHGRAPAGGFTRLMIEKPFGRDSGTFAELNQLTSSCFRESQLFRLDHYLGKEVILN 187
                 6655056666***********************99999**********************************************988 PP

>> EF-hand_7  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.6   0.0       6.2   1.6e+04      14      30 ..     432     448 ..     431     465 .. 0.68
   2 !   28.0   0.3   8.4e-10   2.2e-06       3      68 ..     503     579 ..     501     582 .. 0.82

  Alignments for each domain:
  == domain 1  score: -3.6 bits;  conditional E-value: 6.2
   EF-hand_7  14 dgdgyldkeellrllrk 30 
                 d++ +++++el ++ r+
  KOO22624.1 432 DQSLFVSEAELFEAWRI 448
                 78888888886665553 PP

  == domain 2  score: 28.0 bits;  conditional E-value: 8.4e-10
   EF-hand_7   3 klkeaFkelDtdgdgyldkeellrllrkifqgagegsklsdeelellfkef...............DtdkdGvisfdEFlk 68 
                 +++++F+elD+d++g ld +el  l +++++  g++  l +  ++++f+e+               D  + G+i+f+ +l+
  KOO22624.1 503 EMRQVFNELDKDKSGTLDFSELTALAKRFYD--GREPTLKR--IRAIFDELgtggehrehrfdaseDAGRRGQITFEQMLA 579
                 6899*************************98..55555555..88888888777777777777778899999999998875 PP

>> EF-hand_1  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.6   0.1       4.4   1.1e+04      16      27 ..     436     447 ..     436     448 .. 0.79
   2 !   25.3   0.1   2.5e-09   6.5e-06       1      28 [.     503     530 ..     503     531 .. 0.92
   3 ?   -0.8   0.0      0.56   1.4e+03      15      23 ..     570     578 ..     565     583 .. 0.82

  Alignments for each domain:
  == domain 1  score: -3.6 bits;  conditional E-value: 4.4
                 EEEHHHHHHHHH CS
   EF-hand_1  16 kIdfeEfkellk 27 
                 +++  E+ e+++
  KOO22624.1 436 FVSEAELFEAWR 447
                 588999998876 PP

  == domain 2  score: 25.3 bits;  conditional E-value: 2.5e-09
                 HHHHHHHHHTTTSSSEEEHHHHHHHHHH CS
   EF-hand_1   1 elkeiFrefDkDgdGkIdfeEfkellkk 28 
                 e++++F+e+DkD++G++df+E+ +l k+
  KOO22624.1 503 EMRQVFNELDKDKSGTLDFSELTALAKR 530
                 6899******************998876 PP

  == domain 3  score: -0.8 bits;  conditional E-value: 0.56
                 SEEEHHHHH CS
   EF-hand_1  15 GkIdfeEfk 23 
                 G+I+fe+++
  KOO22624.1 570 GQITFEQML 578
                 9*****986 PP

>> EF-hand_6  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.0   0.2   1.8e-08   4.6e-05       1      25 [.     503     527 ..     503     534 .. 0.90
   2 ?   -1.2   0.0       1.1   2.7e+03      10      23 ..     565     578 ..     559     583 .. 0.82

  Alignments for each domain:
  == domain 1  score: 23.0 bits;  conditional E-value: 1.8e-08
   EF-hand_6   1 elreaFklfDkdgdGkidaeElrka 25 
                 e+r++F+++Dkd++G++d++El ++
  KOO22624.1 503 EMRQVFNELDKDKSGTLDFSELTAL 527
                 79********************876 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 1.1
   EF-hand_6  10 DkdgdGkidaeElr 23 
                 D  + G+i++e++ 
  KOO22624.1 565 DAGRRGQITFEQML 578
                 56688*****9976 PP

>> EF-hand_5  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.6   0.1   1.8e-07   0.00045       2      24 ..     505     527 ..     504     530 .. 0.91

  Alignments for each domain:
  == domain 1  score: 19.6 bits;  conditional E-value: 1.8e-07
                 HHHHHHH-SS-SSCE-HHHHHHH CS
   EF-hand_5   2 kdtFqaiDlNgDGkIskeELktl 24 
                 +++F+++D++++G+++++EL +l
  KOO22624.1 505 RQVFNELDKDKSGTLDFSELTAL 527
                 789*****************775 PP

>> EF-hand_8  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   4.8e-05      0.12      26      53 ..     502     529 ..     500     530 .. 0.88
   2 ?   -2.3   0.0       1.6   4.1e+03       2      12 ..     569     579 ..     568     586 .. 0.76

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 4.8e-05
   EF-hand_8  26 eevdilfrefDtdgdGkisfeEFcvlle 53 
                 +e++ +f+e+D d++G+++f E  +l++
  KOO22624.1 502 DEMRQVFNELDKDKSGTLDFSELTALAK 529
                 788999****************887765 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 1.6
   EF-hand_8   2 kgkItreelrr 12 
                 +g+It+e +  
  KOO22624.1 569 RGQITFEQMLA 579
                 69999998766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (610 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       362  (0.0201908); expected 358.6 (0.02)
Passed bias filter:                      354  (0.0197445); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.54u 0.23s 00:00:00.77 Elapsed: 00:00:00.40
# Mc/sec: 4577.01
//
Query:       KOO22625.1  [L=1522]
Description: muts-like 5 isoform cra_b [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.2e-43  148.5   0.1    2.5e-42  145.0   0.1    2.4  1  MutS_V    MutS domain V
    9.1e-21   75.0   0.0    4.4e-20   72.7   0.0    2.2  2  MutS_III  MutS domain III
  ------ inclusion threshold ------
      0.015   15.1   0.0       0.03   14.1   0.0    1.5  1  AAA_21    AAA domain, putative AbiEii toxin, Type IV TA syste
      0.029   14.7   0.0      0.074   13.4   0.0    1.7  1  MutS_IV   MutS family domain IV
      0.032   14.1   0.0        8.5    6.2   0.0    2.3  2  ATPase_2  ATPase domain predominantly from Archaea
      0.073   13.6   0.0       0.14   12.6   0.0    1.4  1  AAA_23    AAA domain
       0.15   11.1   0.0       0.27   10.2   0.0    1.3  1  T2SSE     Type II/IV secretion system protein
       0.18   11.2   0.0       0.32   10.3   0.0    1.3  1  DUF4838   Domain of unknown function (DUF4838)


Domain annotation for each model (and alignments):
>> MutS_V  MutS domain V
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  145.0   0.1   1.1e-45   2.5e-42       1     184 [.     670     843 ..     670     845 .. 0.92

  Alignments for each domain:
  == domain 1  score: 145.0 bits;  conditional E-value: 1.1e-45
                 EEEE-STTSSHHHHHHHHHHHHHHHHHT--BSSSEEEEE--SEEEEEE--------SS-HHHHHHHHHHHHHTT--TTSEEEEESTS-SS-HHHHHHHH CS
      MutS_V   1 llitGpnmaGkstylrqvalivllaqiGsfvpaekaeisivdkiftRvgasDdlakgkstFmvEmlEtasilknatekslvilDElGRGtstydGlaia 99 
                 +litGpn +Gk ++lr val+v la+iGsfvpae+a+is++d i+tR+ ++++ a  +s+F+++++ +a+++k+at++sl ++DE G+Gt+++dG+++ 
  KOO22625.1 670 MLITGPNASGKTVFLRTVALAVFLAHIGSFVPAESATISLTDGIYTRIHSKESAAVHQSAFLLDLSQMAHLFKHATRRSLCLIDEFGKGTNAQDGISLL 768
                 69************************************************************************************************9 PP

                 HHHHHHHH.HTT--.EEEEEES-GGGGGHHHHSTTEEEEEEEEEEETTEEEEEEEEEES--SS--HHHHHHHTT--HHHHHHHHHHH CS
      MutS_V 100 lavaeyll.ekika.ktlfatHyheltklaekleevknlhlavkeeeedivflykvkegaaeksyGikvaklaglPesvverArevl 184
                 +a +  ll +  ++ ++l  tHy+el ++                 ++++vfly+  +g+++ s+G + a+ a +Pe+v++rAr+v 
  KOO22625.1 769 YASLTDLLaRGRHCpRVLACTHYTELLQVPGF------------LLDDEVVFLYRAIRGVCTDSFGRHCAAAADVPETVIARARHVS 843
                 98776655166778345667******887764............45799**********************************9875 PP

>> MutS_III  MutS domain III
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   72.7   0.0     2e-23   4.4e-20       2     191 .]     242     596 ..     241     596 .. 0.75
   2 ?   -1.7   0.0       1.3   2.9e+03      67      96 ..    1141    1167 ..    1119    1270 .. 0.71

  Alignments for each domain:
  == domain 1  score: 72.7 bits;  conditional E-value: 2e-23
                 HHHHTTSSS.....-TTS.....SSSS.-HHHHH---SSHHHHHHHHHHHH--BS-HHHHHHHHHHHHHT.....TT.HHHHHHHHTT---HHHHHHHH CS
                 xxxxxxxxx.....xxxxx....xxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxxxx RF
    MutS_III   2 TlrnLeile.....nlrgg....skeg.sLlgvldrTvTamGaRlLrewllqPltdleeInaRldaVeele...neelreelrellrrlpDleRllsri 87 
                 T  +L i+      +        +k+g sL ++ ++T+T++G +lLr w+ +P +dl+++++R+da e+l+   n++l ++l+ l+ +++D+ ++ s++
  KOO22625.1 242 TFLSLHIFAderhpS---AhggrGKDGlSLWSIFNKTKTRFGEKLLRGWFARPTQDLDTLRERHDALEFLTaapNAQLHAQLHGLVGKMKDISKIESSL 337
                 666788865344331...0333434447****************************************9774555555555656677788********* PP

                 HTT---HHHHHHHHHHHHHHHTTTTT---SSTHHHHH.............HHHH...HHHHHHB-SS--SSGGGS--B-T................... CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.............xxxx...xxxxxxxxxxxxxxxxxxxxxxx................... RF
    MutS_III  88 slgkakardlkallealkaleelvallekeklaesee.............esla...elleeaideeplalekegedlra................... 151
                 s g +  +d+ a l + + + + ++ l + + +   +             ++l    + + + id e++ + +++                        
  KOO22625.1 338 SRGGLLLSDYTATLATASYAVKVAEMLLAAEVP---QtlpfvrralaaidRELYmvsNTIASVIDFEASGAARSKAMV-Ggshivvregvealldklre 432
                 *99776666444222222112222222222221...122234433333331222223555553333333333333333.24777777777777777777 PP

                 ................................................................................................... CS
                 ................................................................................................... RF
    MutS_III 152 ................................................................................................... 151
                                                                                                                    
  KOO22625.1 433 eyaeitpvldavaaeergrlarigrlppsgelylvyvaqlgfllrlplpamdaaeaeaidrdyrehaglsflfddaadaeeaagdgarggssgagvggv 531
                 777777888888888889999999*************************************************************************** PP

                 .........................HHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHH CS
                 .........................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    MutS_III 152 .........................iealeqelfqelleeveealerlrrlaealaeLDvllSlA 191
                                           ++ e +++++l e++ + l+ lr++ +alaeLD+ll+lA
  KOO22625.1 532 rgsdwyckceacealderygdissrVKDVEAQVVRHLEEQMMQWLPLLRAAQSALAELDCLLALA 596
                 *********************99998888899999999999999********************9 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 1.3
                  HHHHHHHHTT---HHHHHHHHHTT---HHH CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    MutS_III   67 reelrellrrlpDleRllsrislgkakard 96  
                  +++++++ +   D +++l+ri ++ a+++ 
  KOO22625.1 1141 NAAITYTKK---DAKKVLARIDAKAATPTL 1167
                  334444333...888888888886666653 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   0.0   1.4e-05      0.03       1      24 [.     669     692 ..     669     723 .. 0.75

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 1.4e-05
      AAA_21   1 lnvliGpNgsGKSnLLdaldllar 24 
                 l++++GpN+sGK+ +L++  l+ +
  KOO22625.1 669 LMLITGPNASGKTVFLRTVALAVF 692
                 579***************988754 PP

>> MutS_IV  MutS family domain IV
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.0   3.3e-05     0.074       2      65 ..     423     493 ..     422     501 .. 0.87

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 3.3e-05
                 TSHHHHHHHHHHHHHHHHHHHHHCCCCCCCT-.......TTBEECCCSSSEEEEEE-TCCCTTT--SEEEE CS
     MutS_IV   2 fdeeLdelrdrleelekeleeleekereklgi.......kslkveynkvlGyylevtrseakkvpkefirl 65 
                 +++ Ld+lr+ + e++  l++++++er +l           l++ y ++lG++l+++    + +++e i +
  KOO22625.1 423 VEALLDKLREEYAEITPVLDAVAAEERGRLARigrlppsGELYLVYVAQLGFLLRLPLPAMDAAEAEAIDR 493
                 6789***********************98765588999999****************98888887766655 PP

>> ATPase_2  ATPase domain predominantly from Archaea
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.4   0.0    0.0068        15      20      41 ..     667     688 ..     662     700 .. 0.87
   2 ?    6.2   0.0    0.0038       8.5      13      90 ..    1095    1170 ..    1090    1191 .. 0.76

  Alignments for each domain:
  == domain 1  score: 5.4 bits;  conditional E-value: 0.0068
    ATPase_2  20 neiyfiYGpegsGKtaLlkeii 41 
                 ++ ++i+Gp  sGKt +l+ ++
  KOO22625.1 667 ERLMLITGPNASGKTVFLRTVA 688
                 56789*************9875 PP

  == domain 2  score: 6.2 bits;  conditional E-value: 0.0038
    ATPase_2   13 eilerepneiyfiYGpegsGKtaLlkeiienledkdkyviyyialreesiskldefieeeeekkklekalgiavpkae 90  
                  + +e +++  +f+YG    G  a+l++i e  ++  +  +y  + ++ +i+++++    +++  +++ ++++++  +e
  KOO22625.1 1095 RFIEHGSDVDIFLYGLDHDGSAAVLRQIDELMQSERYVGVYDVSRSNAAITYTKKD--AKKVLARIDAKAATPTLVVE 1170
                  6788999999********************99999988888888888888887776..56666666666655555444 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   6.5e-05      0.14      20      44 ..     668     692 ..     658     724 .. 0.88

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 6.5e-05
      AAA_23  20 gltlItGpNGaGKTTildAiklaLy 44 
                  l lItGpN +GKT +l+ + la +
  KOO22625.1 668 RLMLITGPNASGKTVFLRTVALAVF 692
                 689**************99999876 PP

>> T2SSE  Type II/IV secretion system protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.0   0.00012      0.27     128     164 ..     666     703 ..     662     733 .. 0.70

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.00012
       T2SSE 128 erglilvsGgTgsGKttll.yallkeinksderivtvE 164
                 ++ l+l++G+  sGKt++l  ++l+ + ++   +v +E
  KOO22625.1 666 RERLMLITGPNASGKTVFLrTVALAVFLAHIGSFVPAE 703
                 46789**************4445555555555666555 PP

>> DUF4838  Domain of unknown function (DUF4838)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.0   0.00014      0.32      73     109 ..     536     572 ..     531     586 .. 0.81

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.00014
     DUF4838  73 ayCeceackaldkkygspsgallrfvnkvaeavkeef 109
                  yC+ceac+ald++yg++s ++ +   +v ++++e++
  KOO22625.1 536 WYCKCEACEALDERYGDISSRVKDVEAQVVRHLEEQM 572
                 69**************988887777766666666554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1522 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       548  (0.030565); expected 358.6 (0.02)
Passed bias filter:                      463  (0.0258241); expected 358.6 (0.02)
Passed Vit filter:                        64  (0.00356964); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.96u 0.29s 00:00:01.25 Elapsed: 00:00:00.48
# Mc/sec: 9607.49
//
Query:       KOO22626.1  [L=298]
Description: hypothetical protein Ctob_001096 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    9.7e-14   51.7   0.1    1.9e-08   34.3   0.2    2.1  2  Glyco_transf_34  galactosyl transferase GMA12/MNN10 family


Domain annotation for each model (and alignments):
>> Glyco_transf_34  galactosyl transferase GMA12/MNN10 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.3   0.2   1.1e-12   1.9e-08      22      91 ..      32     101 ..      23     109 .. 0.92
   2 !   15.4   0.0   6.4e-07     0.011     140     215 ..     126     208 ..     114     285 .. 0.71

  Alignments for each domain:
  == domain 1  score: 34.3 bits;  conditional E-value: 1.1e-12
  Glyco_transf_34  22 dhelllkvikNrvdYaekhgyeifykkvsallaeemnsvWaklpairaamkkyPeaewiWwlDqdAlimn 91 
                      +++l ++v+ N   +a + gy   + + s + + +++ +W k+ ++r+a+  +P+a+ + w+D d +++n
       KOO22626.1  32 NAALSDRVVANHAAFAARRGYAYWWHRGSLVAPLGWQPYWHKIAMLRRALVRFPTASALIWIDDDIVLTN 101
                      556889*******************99999999***********************************99 PP

  == domain 2  score: 15.4 bits;  conditional E-value: 6.4e-07
  Glyco_transf_34 140 qdwnglnagsflirnsewsklllD.lwa.......dpllrekkkavtesdeqsaleyllekhpevlskvglveqkvinsydege 215
                       +w +ln+g  l+rn+e +++ l+ +w        d ++   + +++  +eq+ale +l  +p  ++++g++ q+  ++ + ++
       KOO22626.1 126 ASWVALNTGIVLVRNDEGGRETLEeVWRratapraDGVSLAFDSQARCLHEQQALEEMLG-EPYWRTRIGVLAQRDHEHTPTMA 208
                      589***************999886256699*99998888888888888*********996.56667788888866655555544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (298 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       368  (0.0205254); expected 358.6 (0.02)
Passed bias filter:                      286  (0.0159518); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.22s 00:00:00.68 Elapsed: 00:00:00.40
# Mc/sec: 2238.87
//
Query:       KOO22627.1  [L=1513]
Description: protein kinase domain containing protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.1e-56  192.2   0.0    1.5e-56  191.7   0.0    1.2  1  Pkinase          Protein kinase domain
    7.3e-40  136.9   0.0    1.1e-39  136.4   0.0    1.2  1  Pkinase_Tyr      Protein tyrosine kinase
    6.8e-07   29.2   0.0    1.4e-06   28.3   0.0    1.5  1  VHP              Villin headpiece domain
    0.00017   21.0   0.1    0.00092   18.6   0.0    2.0  2  Kinase-like      Kinase-like
     0.0042   15.9   0.0     0.0069   15.2   0.0    1.2  1  Pkinase_fungal   Fungal protein kinase
  ------ inclusion threshold ------
      0.022   14.8   3.5         22    5.4   0.0    5.1  5  LRR_6            Leucine Rich repeat
       0.21   11.4   1.2       0.68    9.8   0.2    2.4  2  Ribosomal_L11_N  Ribosomal protein L11, N-terminal domain


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  191.7   0.0   5.7e-60   1.5e-56       2     260 ..      26     277 ..      25     281 .. 0.92

  Alignments for each domain:
  == domain 1  score: 191.7 bits;  conditional E-value: 5.7e-60
                 EEEEEEEEESSEEEEEEEETTTTEEEEEEEEECHCHCHHHHHHHHHHHHHHHHHSCTTB--EEEEEEESSEEEEEEE--TTEBHHHHHH....HHSS-- CS
     Pkinase   2 ekleklGeGsfGkVykaveketgkivAvKkikkekakkkkekkvlrEikilkklkhpnivrlyevfeekdelylvleyveggeladlle....rkgsls 96 
                 ++l+++G+GsfG+ + +   +tg+ ++ Kki+ e++  ++++k+ +E ++lk+l+h+ni +++++f   + l++v+ey++gg+l++++     ++ s++
  KOO22627.1  26 KELRNVGSGSFGSAILVEVVATGELFVSKKISLEHMAPDEQTKASNEAALLKSLRHQNITEYLGSFVLGNMLHIVMEYCSGGTLQQAMArrerASESIE 124
                 57899******************************************************************************99999987766677** PP

                 HHHHHHHHHHHHHHHHHHHHTTEE-SS-SGGGEEEETTTEEEE-SGTTSEESSSSCS.BCTTTSCGGGS-HHHHTTSCBSHHHHHHHHHHHHHHHHHSS CS
     Pkinase  97 eeeakkiakqilegleylHskgiiHrDlKpeNiLidekgelKitDFGlakelesssk.ltsfvgtseYlAPEvlkeneyskkvDvWslGvilyelltgk 194
                 eee+ +++ qi  +le++Hsk i+HrD+Kp+N+++ +++ +K++DFG+ak+++ +s+ +++ vgt++Yl+PE++++++y + +DvW+lGv+l+++++ +
  KOO22627.1 125 EEEVFDWFLQIGMALEFIHSKMILHRDIKPSNVFLTKRNLVKLGDFGIAKQMDDTSDfAQTCVGTPYYLSPELIEGRPYNQLSDVWALGVLLFQMVAFR 223
                 ************************************9999**************999999*************************************** PP

                 -STTTSSHHHHHHHHHHTHHHHHHHCTSHH...HHHTTS-HHHHHHHHHHT-SSGCCSTTHHHHHT CS
     Pkinase 195 ppfsgekgkekvekeldqlekilkilgetkeklpeaseiseeakdllkkllkkdpkkRltaeellq 260
                  pf + +    +           ki+  +  + p +++ + ++++l+  ll++ + +R+ +e +++
  KOO22627.1 224 YPFDAPTLPALAL----------KIV--NGDHHPLKEDTPADLRELIAILLARSQVERPMMEAVMS 277
                 ****444433333..........333..23688999999********************9999887 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  136.4   0.0   4.1e-43   1.1e-39       4     256 ..      28     276 ..      25     278 .. 0.94

  Alignments for each domain:
  == domain 1  score: 136.4 bits;  conditional E-value: 4.1e-43
                  EEEEEEESSEEEEEEEEETTTTSSEEEEEEEEESTTSSHHHHHHHHHHHHHHHTS-BTTB--EEEEEESSSSEEEEEE--TTEBHHHHHHHT..CTTT CS
  Pkinase_Tyr   4 gkklGeGafGkVvegtlkgekekkevkVavKtlkeeateeekeelleeakimkklkhpnivkllgvctkeepllivteyvkgGdLlkfLrkk..ekek 99 
                   +++G+G+fG+ +  ++     + e+ V  K+  e++  +e+++  +ea+++k+l+h+ni ++lg  + ++ l iv+ey++gG+L++ + ++  ++e+
   KOO22627.1  28 LRNVGSGSFGSAILVEVV---ATGELFVSKKISLEHMAPDEQTKASNEAALLKSLRHQNITEYLGSFVLGNMLHIVMEYCSGGTLQQAMARRerASES 122
                  6899*******9999998...7889999999999*******************************************************887446788 PP

                  SBHHHHHHHHHHHHHHHHHHHHTTEEEST-SGGGEEEEETTEEEE-STTTHEETTTSSEEEETTSSTSGGGGS-HHHHHHSEEEHHHHHHHHHHHHHH CS
  Pkinase_Tyr 100 ltlkdllsfalqvAkGmeyLeskklvHrdlaarNvLlsenkvvkisDfGLardiekddeyvkkeeaklpvkWmapEslkekkftsksDvWsfGvllwE 197
                  ++ ++++++ lq+  ++e+++sk ++Hrd+   Nv+l+++++vk++DfG+a+++  dd+   ++++     +++pE ++ + +++ sDvW+ Gvll+ 
   KOO22627.1 123 IEEEEVFDWFLQIGMALEFIHSKMILHRDIKPSNVFLTKRNLVKLGDFGIAKQM--DDTSDFAQTCVGTPYYLSPELIEGRPYNQLSDVWALGVLLFQ 218
                  9999**************************************************..777777888889999*************************** PP

                  HHTTSSGTTTTSHHHHHHHHHHTTEES-BBTTSBHHHHHHHHHHT-SSGGGS--HHHHH CS
  Pkinase_Tyr 198 iftlgespypglkneevleklkegkrlekpekcpeelyelmkkcweedpeeRptfselv 256
                  ++   + p+   +   ++ k+ +g + +  e++p++l el+   +++++ eRp +++++
   KOO22627.1 219 MVA-FRYPFDAPTLPALALKIVNGDHHPLKEDTPADLRELIAILLARSQVERPMMEAVM 276
                  **9.799************************************************9986 PP

>> VHP  Villin headpiece domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.3   0.0   5.3e-10   1.4e-06       1      36 []    1478    1513 .]    1478    1513 .] 0.99

  Alignments for each domain:
  == domain 1  score: 28.3 bits;  conditional E-value: 5.3e-10
         VHP    1 YLsdedFeevFgmtreeFykLPkWKqnnlKkkagLF 36  
                  +Lsd  F +v+gm+r+ Fy++ k  q+++K++ gLF
  KOO22627.1 1478 HLSDVQFRQVLGMDRANFYAMTKMDQMRIKQDTGLF 1513
                  9**********************************9 PP

>> Kinase-like  Kinase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.6   0.0   3.6e-07   0.00092     160     288 .]     142     269 ..      91     269 .. 0.80
   2 ?   -0.6   0.1      0.26   6.6e+02     125     175 ..     751     800 ..     733     808 .. 0.75

  Alignments for each domain:
  == domain 1  score: 18.6 bits;  conditional E-value: 3.6e-07
  Kinase-like 160 LqakglvhgkftvdnllldekgglmlggftaLvragtkvvlsevekg...faPpEllgsrggytrknktkmthkldaWqlGlviyriwclklPltlat 254
                  +++k ++h ++++ n++l ++  ++lg+f+   +  +    +++++g   +  pEl+  r  y++          d+W+lG+  + + ++  P++ +t
   KOO22627.1 142 IHSKMILHRDIKPSNVFLTKRNLVKLGDFGIAKQMDDTSDFAQTCVGtpyYLSPELIEGRP-YNQ--------LSDVWALGVLLFQMVAFRYPFDAPT 230
                  68899*************************9999999999999996544477889887743.333........56*******************9876 PP

  Kinase-like 255 .eeakeew...kfklck.kipekvkaLlkkfLqlsqedR 288
                   +    +    + ++ k   p  ++ L++ +L +sq +R
   KOO22627.1 231 lPALALKIvngDHHPLKeDTPADLRELIAILLARSQVER 269
                  322222223445666665888888888888888887665 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 0.26
  Kinase-like 125 eilnkvlqkrsethkkletiarlllTlqlirlaanLqakglvhgkftvdnl 175
                  e l+  l + +   +kl  +a ++l ++l+  aa+L ++g+ ++++ ++++
   KOO22627.1 751 EQLQRRLAQLHLGTNKLSRAAAAQL-AELLSRAASLCQLGVSRTQLLPESF 800
                  3344444444444789999999999.899***************9999876 PP

>> Pkinase_fungal  Fungal protein kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.0   2.7e-06    0.0069     323     389 ..     143     201 ..     124     212 .. 0.84

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 2.7e-06
  Pkinase_fungal 323 flkagiLHrDiSenNilitdskkegerkglLiDLDlakelsddssesgarertGTleFmaievlkge 389
                     +  + iLHrDi   N+ +t     +++   L D+ +ak+++d+  ++ a++ +GT+++++ e+++g 
      KOO22627.1 143 H-SKMILHRDIKPSNVFLT-----KRNLVKLGDFGIAKQMDDT--SDFAQTCVGTPYYLSPELIEGR 201
                     4.788**************.....788999***********74..4455789********9999865 PP

>> LRR_6  Leucine Rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.0       2.5   6.4e+03       7      13 ..     640     646 ..     638     647 .. 0.84
   2 ?    5.2   0.0      0.01        26       3      16 ..     697     710 ..     696     719 .. 0.80
   3 ?   -0.0   0.0      0.48   1.2e+03       5      14 ..     728     737 ..     725     739 .. 0.83
   4 ?   -2.1   0.1       2.2   5.6e+03       4      13 ..     882     891 ..     880     891 .. 0.84
   5 ?    5.4   0.0    0.0087        22       4      24 .]     952     972 ..     949     972 .. 0.93

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 2.5
       LRR_6   7 eLdLsgN 13 
                  LdL++N
  KOO22627.1 640 VLDLAHN 646
                 7*****9 PP

  == domain 2  score: 5.2 bits;  conditional E-value: 0.01
       LRR_6   3 thLteLdLsgNdIg 16 
                 ++L++L L++N Ig
  KOO22627.1 697 STLQTLTLAHNSIG 710
                 79***********8 PP

  == domain 3  score: -0.0 bits;  conditional E-value: 0.48
       LRR_6   5 LteLdLsgNd 14 
                 Lt+Ld+++ +
  KOO22627.1 728 LTTLDVTHTG 737
                 9******975 PP

  == domain 4  score: -2.1 bits;  conditional E-value: 2.2
       LRR_6   4 hLteLdLsgN 13 
                 hL  LdLs N
  KOO22627.1 882 HLVQLDLSAN 891
                 99*****955 PP

  == domain 5  score: 5.4 bits;  conditional E-value: 0.0087
       LRR_6   4 hLteLdLsgNdIgDeGaeaLa 24 
                 +Lt++dL++ ++ D  + a+a
  KOO22627.1 952 SLTSVDLTSLKVEDPALVAIA 972
                 8****************9997 PP

>> Ribosomal_L11_N  Ribosomal protein L11, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.1       1.3   3.4e+03      14      29 ..    1039    1054 ..    1034    1058 .. 0.82
   2 ?    9.8   0.2   0.00026      0.68      10      38 ..    1133    1161 ..    1129    1177 .. 0.75

  Alignments for each domain:
  == domain 1  score: -2.0 bits;  conditional E-value: 1.3
  Ribosomal_L11_N   14 aGkAtpaPplGpaLGp 29  
                        G  t +P++ pa++p
       KOO22627.1 1039 HGSSTISPAISPAISP 1054
                       5778889999999988 PP

  == domain 2  score: 9.8 bits;  conditional E-value: 0.00026
  Ribosomal_L11_N   10 lrvpaGkAtpaP.plGpaLGplGlnikkfc 38  
                       l+v   +A p+P p+Gp+LGp Gl++    
       KOO22627.1 1133 LNVMHREA-PGPmPVGPQLGPAGLSPLGAR 1161
                       67777888.55559**********986555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1513 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       519  (0.0289475); expected 358.6 (0.02)
Passed bias filter:                      345  (0.0192426); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.86u 0.29s 00:00:01.14 Elapsed: 00:00:00.46
# Mc/sec: 9805.73
//
Query:       KOO22628.1  [L=874]
Description: hypothetical protein Ctob_001098 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.1e-05   24.9   0.0    0.00038   19.8   0.0    2.1  2  ADPrib_exo_Tox  ADP-ribosyltransferase exoenzyme
    5.7e-05   22.5   0.0    0.00052   19.4   0.0    2.2  1  ART             NAD:arginine ADP-ribosyltransferase


Domain annotation for each model (and alignments):
>> ADPrib_exo_Tox  ADP-ribosyltransferase exoenzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    2.7   0.0    0.0079        71      15      43 ..     596     624 ..     583     673 .. 0.88
   2 !   19.8   0.0   4.3e-08   0.00038     111     172 ..     695     765 ..     683     785 .. 0.81

  Alignments for each domain:
  == domain 1  score: 2.7 bits;  conditional E-value: 0.0079
                     TS-HHHHHHHHHHCCTTHHHHHHHHHCTT CS
  ADPrib_exo_Tox  15 kltssekeaireYtgsgysdINnyLrqnk 43 
                     +lt +e  a+r Y g + ++IN  Lr+  
      KOO22628.1 596 ELTLDECLAVRLYSGASFQPINDFLRNIA 624
                     47889999*****************9755 PP

  == domain 2  score: 19.8 bits;  conditional E-value: 4.3e-08
                     ESS-EEEESSSS.SCCCTTT....SEEEEEEE-TTSBEEE-CC.....CSSSGCG-EEEE-TTEEEEEEEE CS
  ADPrib_exo_Tox 111 ergyvSTslvkdtaasfggr....eilleltvpkgsegayisp.....lslypgeaEvLlprgltykinki 172
                     + g++STsl++ t  ++++     ++l+el+++  s + y  +     ls+y+ e E+L+p  +++++  +
      KOO22628.1 695 DMGFMSTSLNERTPINYMHPspapNVLWELRLQPESDAGYHVGaniaiLSQYAAEEEMLFPPCTMLQVLPA 765
                     679*********77777666777889******99888877555466669************9999999544 PP

>> ART  NAD:arginine ADP-ribosyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.4   0.0   5.7e-08   0.00052      49     207 ..     579     769 ..     566     779 .. 0.66

  Alignments for each domain:
  == domain 1  score: 19.4 bits;  conditional E-value: 5.7e-08
         ART  49 kerkakle...lpegfkd...ehgiAllaYtssselyrelneavreaGr.sree.....ylsnfdfkalhfyLtraLqlLrk..dsqrcsq.vyRgvkg 132
                 +er+a+ +   lp +f +   ++ +A+ +Y++    ++++n+ +r+  + s e        ++  f+a    + ra+ +L++    ++++q v+Rgv+g
  KOO22628.1 579 NERRARGFgvrLPPQFAEltlDECLAVRLYSGA--SFQPINDFLRNIAKlSDELrvhmvRHPSLTFAATIGHICRAIRKLAAvaTDEESKQvVFRGVRG 675
                 566665555556776654444999*******99..567777777764432433300000345567888888899*******998666666679*****8 PP

         ART 133 lrfsrakkgksvR......fgqFtssslkkkvae.....efgqdtllsik....t....clgvpIkefskfpsedevLIppfevFkvtnlskee 207
                 +  + +   + v       +  F+s+sl+++            ++l +++    +     +g++I  +s++  e+e L pp ++ +v  +++e+
  KOO22628.1 676 ILPRTFWLPDRVEdmvcavDMGFMSTSLNERTPInymhpSPAPNVLWELRlqpeSdagyHVGANIAILSQYAAEEEMLFPPCTMLQVLPATSEG 769
                 7666554444333111122678*******999876666633445666665222212222469*************************9876654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (874 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       363  (0.0202465); expected 358.6 (0.02)
Passed bias filter:                      295  (0.0164538); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.63u 0.29s 00:00:00.92 Elapsed: 00:00:00.44
# Mc/sec: 5916.53
//
Query:       KOO22629.1  [L=260]
Description: hypothetical protein Ctob_001104 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
  ------ inclusion threshold ------
      0.068   12.2   3.0      0.087   11.9   3.0    1.2  1  Atg14           Vacuolar sorting 38 and autophagy-related sub
      0.068   13.0   2.1      0.073   13.0   0.2    2.0  2  Pox_A_type_inc  Viral A-type inclusion protein repeat
       0.24   11.3  19.0       0.33   10.9  15.7    2.0  2  YscO            Type III secretion protein YscO
        0.3   10.3   2.1       0.44    9.7   2.1    1.1  1  MPS2            Monopolar spindle protein 2
        5.1    7.4  11.7          3    8.1   9.4    1.7  2  TMF_TATA_bd     TATA element modulatory factor 1 TATA binding


Domain annotation for each model (and alignments):
>> Atg14  Vacuolar sorting 38 and autophagy-related subunit 14
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   3.0   2.4e-05     0.087      29     170 ..      26     172 ..       5     223 .. 0.75

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 2.4e-05
       Atg14  29 erlaklksekeslkkkiekalegkeeaeqledkiknkkakleelksliadlrerlqelkdklsqlkkeieekkkklaklsdklk.....kRrsdleslq 122
                 +r++ +  +++++ +   + le+++  ++++++i + +++l++l++l +++   +qe+   +++l +e+++ ++ l +     +     +R  +++  +
  KOO22629.1  26 QRTIEVTQRQAQIARAQVRRLEQTH--CEQAARILQGAKSLQQLQQLLRETLHVKQEVLGVCDELEREVAALREALGRVAPGEAekvprRRAGSASDST 122
                 5566677777777777788999999..999999999999999999999999999999999999999999999999977665555666665555666666 PP

       Atg14 123 neleerrkk..qiaklqdaikrieqklsslssktlesrsslcselaklyg 170
                 +++e+ r++   +++ + ++ r++ ++   +++tl + ss+   l+ l+ 
  KOO22629.1 123 YSVEALRQRagDLERQLADTERSALQQIGATPSTLMAMSSDYNPLNDLSA 172
                 66666555422577777788888888777777777775555555555444 PP

>> Pox_A_type_inc  Viral A-type inclusion protein repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.1       1.1   3.9e+03      13      16 ..      88      91 ..      87      97 .. 0.58
   2 ?   13.0   0.2     2e-05     0.073       3      19 ..     125     141 ..     124     145 .. 0.91

  Alignments for each domain:
  == domain 1  score: -2.0 bits;  conditional E-value: 1.1
  Pox_A_type_inc 13 LErq 16
                    LEr+
      KOO22629.1 88 LERE 91
                    6665 PP

  == domain 2  score: 13.0 bits;  conditional E-value: 2e-05
  Pox_A_type_inc   3 msrlRsRIsDLErqLse 19 
                     +++lR R  DLErqL++
      KOO22629.1 125 VEALRQRAGDLERQLAD 141
                     899************98 PP

>> YscO  Type III secretion protein YscO
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9  15.7   9.2e-05      0.33      48     137 ..       9      98 ..       2     108 .. 0.85
   2 ?    1.4   0.1     0.079   2.8e+02      75      96 ..     125     146 ..     119     155 .. 0.79

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 9.2e-05
                 HHHHHHHHHHHHTTT--HHHHHHHHHHHHHHHHHHHHHHHH.HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
        YscO  48 aqeearlyaeiigklvllkelekvkqqvalLrekeaelekq.veeakqqleaerealrqarkelqearraveKfaelarlvraeasrqqer 137
                 +++  rl a++ +++ +++ +e  ++q ++ r+++++le+  +e+a++ l + ++ l+q+++ l+e+ + ++++  + + ++ e ++++e+
  KOO22629.1   9 QRQARRLEAQLYQRAQDQRTIEVTQRQAQIARAQVRRLEQThCEQAARIL-QGAKSLQQLQQLLRETLHVKQEVLGVCDELEREVAALREA 98 
                 55666777888999999**********************96266666555.556899****************999999999999999987 PP

  == domain 2  score: 1.4 bits;  conditional E-value: 0.079
                 HHHHHHHHHHHHHHHHHHHHHH CS
        YscO  75 valLrekeaelekqveeakqql 96 
                 v +Lr++  +le q+++ ++ +
  KOO22629.1 125 VEALRQRAGDLERQLADTERSA 146
                 7788999999999998877755 PP

>> MPS2  Monopolar spindle protein 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   2.1   0.00012      0.44     122     195 ..      21     100 ..       4     103 .. 0.73

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 0.00012
        MPS2 122 ssknsekdslstprkkilldllkk...qesPeklrrsnrklkaLevrveslkdELeakdevl...rekeRelleLkkrls 195
                 +  +++   + t r+ ++++ + +   q   e+  r+++  k+L+   + l++ L+ k+evl    e eRe+  L++ l+
  KOO22629.1  21 QRAQDQRTIEVTQRQAQIARAQVRrleQTHCEQAARILQGAKSLQQLQQLLRETLHVKQEVLgvcDELEREVAALREALG 100
                 4445566677888999999987651115567888999*******9777778888******98554699*******99876 PP

>> TMF_TATA_bd  TATA element modulatory factor 1 TATA binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.1   9.4   0.00082         3      16     107 ..       7      98 ..       1     102 [. 0.91
   2 ?   -1.7   0.0      0.92   3.3e+03      13      31 ..     124     142 ..     114     153 .. 0.52

  Alignments for each domain:
  == domain 1  score: 8.1 bits;  conditional E-value: 0.00082
  TMF_TATA_bd  16 rlsseirrlEgElaslkeelerleaerdeareeivklmkeneelkelkkeleelekeleelqeryetlLellGeksEeveELraDvaDlKem 107
                   ++ + rrlE++l +  ++  ++e  +++a+   +++ +  ++  e+++++ +  k+l++lq+ + ++L + +e    ++EL+ +va l+e 
   KOO22629.1   7 MFQRQARRLEAQLYQRAQDQRTIEVTQRQAQIARAQVRRLEQTHCEQAARILQGAKSLQQLQQLLRETLHVKQEVLGVCDELEREVAALREA 98 
                  57999**********9999999999999999999999999999999999****************************************996 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 0.92
  TMF_TATA_bd  13 lverlsseirrlEgElasl 31 
                   ve l ++   lE +la +
   KOO22629.1 124 SVEALRQRAGDLERQLADT 142
                  4444444444444444333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (260 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1733  (0.096659); expected 358.6 (0.02)
Passed bias filter:                      759  (0.0423336); expected 358.6 (0.02)
Passed Vit filter:                        77  (0.00429472); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.54u 0.28s 00:00:00.82 Elapsed: 00:00:00.43
# Mc/sec: 1830.08
//
Query:       KOO22630.1  [L=84]
Description: hypothetical protein Ctob_001105 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.034   14.0   6.5      0.072   13.0   6.5    1.6  1  UIM        Ubiquitin interaction motif
      0.035   13.9   2.4      0.061   13.1   2.4    1.3  1  RAP80_UIM  RAP80 N-terminal ubiquitin interaction motif


Domain annotation for each model (and alignments):
>> UIM  Ubiquitin interaction motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   6.5     8e-06     0.072       3      16 ..       9      22 ..       9      23 .. 0.91

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 8e-06
         UIM  3 dedLqrAlalSlqE 16
                de++q+Ala+S++ 
  KOO22630.1  9 DEEMQLALAMSMSQ 22
                9***********87 PP

>> RAP80_UIM  RAP80 N-terminal ubiquitin interaction motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   2.4   6.8e-06     0.061       7      25 ..       7      25 ..       5      28 .. 0.91

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 6.8e-06
   RAP80_UIM  7 qmtEeEqFALALkmsEqEA 25
                 m Ee q ALA+ ms q A
  KOO22630.1  7 DMDEEMQLALAMSMSQQAA 25
                699**************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (84 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       368  (0.0205254); expected 358.6 (0.02)
Passed bias filter:                      251  (0.0139997); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.35u 0.25s 00:00:00.60 Elapsed: 00:00:00.41
# Mc/sec: 614.89
//
Query:       KOO22631.1  [L=2487]
Description: heat shock cognate 70 kda [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   1.2e-255  849.4   8.1   1.2e-255  849.4   8.1    2.5  2  HSP70            Hsp70 protein
    8.7e-93  307.7   0.0    4.7e-46  156.5   0.0    3.3  2  AAA              ATPase family associated with various cellul
    3.1e-18   65.8   0.1    1.1e-07   31.6   0.0    2.9  2  PGM_PMM_I        Phosphoglucomutase/phosphomannomutase, alpha
    2.2e-17   62.6   3.6    2.1e-10   40.2   1.6    4.4  3  AAA_lid_3        AAA+ lid domain
      2e-12   46.6   0.1    9.1e-12   44.4   0.0    2.0  2  MreB_Mbl         MreB/Mbl protein
    2.2e-12   47.0   0.0    3.3e-05   23.7   0.0    2.7  2  RuvB_N           Holliday junction DNA helicase RuvB P-loop d
    7.8e-12   45.2   1.1    7.1e-11   42.1   0.3    3.1  2  PGM_PMM_IV       Phosphoglucomutase/phosphomannomutase, C-ter
    1.3e-10   41.6   6.2    2.4e-06   27.8   0.0    4.0  2  AAA_33           AAA domain
    1.9e-10   40.8   0.0    8.2e-10   38.7   0.0    2.2  1  CDC48_N          Cell division protein 48 (CDC48), N-terminal
    2.4e-10   40.8   0.0      0.001   19.2   0.0    2.8  2  AAA_2            AAA domain (Cdc48 subfamily)
    3.3e-09   36.9   0.0    0.00082   19.4   0.0    3.4  2  AAA_5            AAA domain (dynein-related subfamily)
    4.7e-08   33.1   0.0     0.0078   16.2   0.0    2.6  2  AAA_14           AAA domain
    2.1e-07   31.3   0.1      0.016   15.5   0.0    4.0  3  AAA_28           AAA domain
    2.3e-07   30.3   0.0     0.0064   15.7   0.0    2.6  2  TIP49            TIP49 P-loop domain
      4e-07   30.4   0.0      0.017   15.5   0.0    3.1  2  RNA_helicase     RNA helicase
    1.3e-06   28.3   0.0      0.012   15.4   0.0    2.6  2  Viral_helicase1  Viral (Superfamily 1) RNA helicase
    1.4e-06   28.5   1.6    1.8e-06   28.1   0.2    2.1  1  PGM_PMM_III      Phosphoglucomutase/phosphomannomutase, alpha
    2.2e-06   28.2   0.1    0.00041   20.8   0.1    6.2  4  AAA_16           AAA ATPase domain
    3.1e-06   26.7   0.5      0.089   12.2   0.0    2.5  2  Mg_chelatase     Magnesium chelatase, subunit ChlI
    4.1e-06   27.3   1.2       0.14   12.6   0.0    4.1  3  ABC_tran         ABC transporter
    5.9e-06   26.9   0.0       0.31   11.6   0.0    3.3  2  AAA_18           AAA domain
    7.8e-06   25.7   0.0      0.073   12.8   0.0    2.5  2  IstB_IS21        IstB-like ATP binding protein
    1.2e-05   25.7   7.7      0.022   15.0   0.1    4.5  2  AAA_22           AAA domain
    1.3e-05   25.2   0.1    0.00031   20.8   0.0    2.6  2  Molydop_binding  Molydopterin dinucleotide binding domain
    4.1e-05   23.5   0.1    0.00074   19.5   0.0    2.7  2  Vps4_C           Vps4 C terminal oligomerisation domain
    4.2e-05   23.5   1.6       0.47   10.4   0.1    3.8  4  NACHT            NACHT domain
    5.6e-05   23.6   0.0        0.7   10.3   0.0    3.4  2  AAA_17           AAA domain
    0.00011   22.2   0.0       0.24   11.3   0.0    2.5  2  Rad17            Rad17 P-loop domain
    0.00033   20.6   0.0       0.94    9.3   0.0    2.6  2  Bac_DnaA         Bacterial dnaA  protein
    0.00035   19.8   0.9       0.72    9.0   0.0    3.3  2  NB-ARC           NB-ARC domain
    0.00036   20.7   1.3       0.34   11.0   0.0    3.3  2  Cytidylate_kin2  Cytidylate kinase-like family
    0.00043   19.4   0.3       0.13   11.3   0.1    2.4  2  Parvo_NS1        Parvovirus non-structural protein NS1
    0.00047   19.7   0.0       0.37   10.3   0.0    2.5  2  AAA_7            P-loop containing dynein motor region
     0.0013   18.7   0.0       0.45   10.5   0.0    2.6  2  TsaE             Threonylcarbamoyl adenosine biosynthesis pro
     0.0018   18.0   0.0        2.7    7.7   0.0    2.7  2  Sigma54_activat  Sigma-54 interaction domain
     0.0027   17.1   0.1        4.3    6.6   0.0    3.4  3  ATPase           KaiC
     0.0029   16.9   1.5        2.2    7.5   0.0    3.2  2  Zeta_toxin       Zeta toxin
     0.0031   17.3   0.0          2    8.1   0.0    2.5  2  AAA_24           AAA domain
     0.0035   17.3   2.8          1    9.2   0.0    3.5  2  ATPase_2         ATPase domain predominantly from Archaea
     0.0036   17.2   0.0        3.5    7.5   0.0    2.8  2  AAA_3            ATPase family associated with various cellul
     0.0046   16.2   0.0       0.17   11.0   0.0    2.5  2  DUF815           Protein of unknown function (DUF815)
     0.0046   16.4   0.3        4.2    6.8   0.0    3.0  2  PhoH             PhoH-like protein
     0.0081   16.3   0.0        2.4    8.3   0.0    2.8  2  Sigma54_activ_2  Sigma-54 interaction domain
  ------ inclusion threshold ------
      0.012   14.9   1.0        2.7    7.1   0.0    3.1  2  DUF2075          Uncharacterized conserved protein (DUF2075)
      0.069   13.3   1.2         20    5.3   0.0    3.2  2  SKI              Shikimate kinase
      0.088   12.2   0.1        5.9    6.3   0.0    3.2  3  TniB             Bacterial TniB protein
       0.11   12.4   0.1         11    5.9   0.0    2.8  2  NTPase_1         NTPase
       0.19   12.0   3.2         12    6.2   0.0    3.9  2  AAA_19           AAA domain
       0.22   11.1  11.8        7.8    6.0   0.1    5.2  4  AAA_25           AAA domain
        1.2    9.2  10.9        3.3    7.8   0.7    4.2  3  DUF1664          Protein of unknown function (DUF1664)
          2    8.6   6.4       0.62   10.3   1.7    2.6  1  SesA             N-terminal domain on NACHT_NTPase and P-loop
        2.1    8.3   8.7       0.14   12.0   0.2    3.4  2  HTH_ParB         HTH domain found in ParB protein
        9.3    6.3  15.1       0.99    9.4   3.2    4.0  3  Baculo_PEP_C     Baculovirus polyhedron envelope protein, PEP


Domain annotation for each model (and alignments):
>> HSP70  Hsp70 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.1   2.0       9.5   3.2e+03     529     588 ..    1716    1773 ..    1680    1821 .. 0.45
   2 !  849.4   8.1  3.5e-258  1.2e-255       1     598 [.    1850    2456 ..    1850    2457 .. 0.98

  Alignments for each domain:
  == domain 1  score: -4.1 bits;  conditional E-value: 9.5
                  HHHHHHHHHHHHHHHHHHHHGGGSTHHHHHHHHHHHHHHHCHTTSSCHHHHHHHHHHHHH CS
       HSP70  529 eakneaeelvyslekkleeeaekvseaekekvesaieeLkeeleeeekeeieakteelkk 588 
                  e+ +e+e  + sl +++++++  ++e +  ++e+  ++L +++ee  + ++ ++ +el++
  KOO22631.1 1716 ERLEEMEMQLGSLTRQMTHSMPGMNE-RLVRLEEPRKQLAAQMEE-VARALAKASNELAE 1773
                  22222222222222222222222221.112222222222222211.11222222222222 PP

  == domain 2  score: 849.4 bits;  conditional E-value: 3.5e-258
                  EEEEEEXSSEEEEEEEETTEEEEEXXTTSXSSEESEEEEXTTSEEETHHHHHCTTTTGGGEEEXGGGTTTXBTTSHHHHHHHTTXSSEEEEETTSBE CS
       HSP70    1 viGiDLGttnsvvavmeggkievianeegnrttPsvvaFtkkerlvGeaAkrqavtnpkntvfsvKrliGrkfsdpevqkeikelpykvvkkengka 97  
                  ++GiDLGtt+s+v++++++++e+ian++gnrttPs+vaF+++er++G+aAk+qa++np+nt+f++KrliGrkfsd++ q+++k++p+kv++k+ +++
  KOO22631.1 1850 AVGIDLGTTYSCVGIWQNDRVEIIANDQGNRTTPSFVAFSDTERMIGDAAKNQAAMNPENTIFDAKRLIGRKFSDSSTQSDMKHFPFKVKAKDGDRP 1946
                  59*********************************************************************************************** PP

                  EEEEEETTE..EEEHHHHHHHHHHHHHHHHHHHHTSBEEEEEEEEXTTXXHHHHHHHHHHHHHTTXEEEEEEEHHHHHHHHHHTCCSS.SCEEEEEE CS
       HSP70   98 vveveaage..kftpeqisamvLkklketaeaylgkkvtdavitvPaYfndaqRqatkdAgkiAGLnvlRivNepTAaalaYGldkkd.kernvlvy 191 
                  v+eve++ge   ftpe+is+m+L k+ketae+ylgk+v +av+tvPaYfnd+qR +tkdA++iAG+n+lRi+NepTAaa+aYGldk++ +ernvl++
  KOO22631.1 1947 VIEVEFKGEtkLFTPEEISSMILVKMKETAESYLGKDVPNAVVTVPAYFNDSQRTSTKDAAAIAGINCLRIINEPTAAAIAYGLDKQSsSERNVLIF 2043
                  ********9999***************************************************************************9899****** PP

                  EEXSSXEEEEEEEEETTEEEEEEEEEETTXSHHHHHHHHHHHHHHHHHHHHSXXGGGSHHHHHHHHHHHHHHHHHTTTSSCSEEEEEEEEEETTTEE CS
       HSP70  192 DlGggtfdvSilelekGvfevkaTagDthlGGedfDealvehlveefkkkegidlskdkkalqrlkeaaekaKkeLSsskqteinleietvdedgkd 288 
                  DlGggtfdvS+l++e+G+fevkaTagDthlGGedfD++ v+h+v+efk+k++ d++ + +a++rl++a+e+aK++LSs  +t++++ei++++e g d
  KOO22631.1 2044 DLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRTVNHFVQEFKRKHKKDMTGNARAMRRLRTACERAKRTLSS--STQTSIEIDSLFE-GID 2137
                  ******************************************************************************..89999999*****.*** PP

                  EEEEEEHHHHHHHHHHHHHHTHHHHHHHHHHCTEEGGGCSEEEEESGGGGSHHHHHHHHHHTT.CHHBSSSHTTTHHHHHHHHHHHHHCTC..GCSH CS
       HSP70  289 lseklsRakfeelvedllertlepvekalkdaklkkeeidevvlvGGstRiPkvqelvkelfg.kepsktvnpDeavaiGAAvqagvlsge..eevk 382 
                  + ++++Ra+feel++dl++ t+epvek+l+d+k++k+++++vvlvGGstRiPkv +l+ ++f+ kepsk++npDeava+GAAvqa++lsg+   +++
  KOO22631.1 2138 FFSSITRARFEELNMDLFRGTMEPVEKVLRDSKMSKNQVHDVVLVGGSTRIPKVIQLLTDFFNgKEPSKSINPDEAVAYGAAVQAAILSGTgsAKTE 2234
                  **************************************************************99*************************998799** PP

                  CCEEEEBESS-EEEEETTTEEEEEESTTCBSSEEEEEEEEESSTTSSSEEEEEEESSSSBGGGSEEEEEEEEECESSCSTTCSEEEEEEEEETTSCE CS
       HSP70  383 dllllDvtpLslgietlggvmtkliernttiptkksqvfstaadnqtaveievlqgerelvkdnkllgsfeldgippaprGvpqieVtfdidanGil 479 
                  dllllDvtpLslg+et+g+vmt li+rntt+ptkksq+fst++dnq+av+i+v++ger+ +kdn++lg+f+l+gipp+prGvpq++VtfdidanG+l
  KOO22631.1 2235 DLLLLDVTPLSLGLETAGEVMTVLIPRNTTVPTKKSQTFSTYSDNQPAVTIQVFEGERSRTKDNNKLGEFNLSGIPPMPRGVPQVDVTFDIDANGML 2331
                  ************************************************************************************************* PP

                  EEEEEETTTCCEEEEEEECCSS.SBHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH..GGGSTHHHH....HHHHHHHHHHHC CS
       HSP70  480 tvsakdketgkeeeitieaseg.lseeeiekmvkdaeesaeedkkkkeaieakneaeelvyslekkleee..aekvseaek....ekvesaieeLke 569 
                  +vsa +k+tgke++iti+++++ ls+e++ekm  dae++a+ed+  k+++e+kn +e+++ys++++++++  ++k+s ++k    +++++a+++L++
  KOO22631.1 2332 NVSALEKSTGKENKITITNDKSrLSKEDVEKMTADAERFAKEDELFKKKVESKNGLENYCYSMKNTIQDDklKDKISTDDKakaeKAIDDALKWLES 2428
                  ********************999*********************************************99999*****9998888889999999999 PP

                  HTTSSCHHHHHHHHHHHHHHHHHHHHHHH CS
       HSP70  570 eleeeekeeieakteelkkvvekiaekly 598 
                  + + +ekee+e+k++e+++++++i+++ly
  KOO22631.1 2429 N-QLAEKEEFEHKQKEVESICTPIMQSLY 2456
                  9.6899*******************9987 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  147.5   0.0   8.2e-46   2.8e-43       1     131 [.     853     982 ..     853     983 .. 0.98
   2 !  156.5   0.0   1.4e-48   4.7e-46       1     132 []    1126    1259 ..    1126    1259 .. 0.97

  Alignments for each domain:
  == domain 1  score: 147.5 bits;  conditional E-value: 8.2e-46
                 EEEESSTTSSHHHHHHHHHHHHTHEEEEEETTTCSSSSTTHHHHHHHHHHHHHHHTSTSEEEEEETGGGHHHHHTTCCCHHHHHHHHHHHHHHHHTTTS CS
         AAA   1 vllyGppGtGKTllakavakelgvefleisgsellskyvgesekkirelfkeakekakpsilfiDEidalaksrsgseseeeervvnqLlteldgvkkk 99 
                 vl++GppG+GKT++akava e+g++f+ i+g+e++sk+ gese+k+r+ f+e+++++ p ilfiDE+da+a++r++++ e+e+r+v+q+lt +dg + k
  KOO22631.1 853 VLIHGPPGCGKTMIAKAVAAETGAYFFLINGPEVMSKMAGESEQKLRQAFEECEKNS-PAILFIDELDAIAPRRDKAQGEVEKRIVSQMLTLMDGISPK 950
                 79******************************************************9.****************************************6 PP

                 SSTEEEEEEESSGGGSTHHHHS.TTSSEEEETT CS
         AAA 100 eskvivigatnrpdkldpallr.gRfdrkieie 131
                  s+v+v++atnrp+ ++pal+r gRfd +i+i+
  KOO22631.1 951 -SQVVVMAATNRPNAVEPALRRfGRFDLEINIP 982
                 .66***************************997 PP

  == domain 2  score: 156.5 bits;  conditional E-value: 1.4e-48
                  EEEESSTTSSHHHHHHHHHHHHTHEEEEEETTTCSSSSTTHHHHHHHHHHHHHHHTSTSEEEEEETGGGHHHHH...TTCCCHHHHHHHHHHHHHHH CS
         AAA    1 vllyGppGtGKTllakavakelgvefleisgsellskyvgesekkirelfkeakekakpsilfiDEidalaksr...sgseseeeervvnqLlteld 94  
                  vl+yGppG+GKTllaka+a+e++++f++++g+ell k++gese+++relf++a++ + p+++f+DE+d++ak+r    g++se ++rv+nq+lte+d
  KOO22631.1 1126 VLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTKWFGESEANVRELFDKARQAS-PCVIFFDEMDSIAKARgsgGGGASEAGDRVINQILTEID 1221
                  79******************************************************9.*****************98888***************** PP

                  HTTTSSSTEEEEEEESSGGGSTHHHHS.TTSSEEEETTS CS
         AAA   95 gvkkkeskvivigatnrpdkldpallr.gRfdrkieiel 132 
                  gv  ++s v+vigatnrpd ldpa++r gR+d+ i+i+l
  KOO22631.1 1222 GVGARKS-VFVIGATNRPDILDPAIMRpGRLDQLIYIPL 1259
                  ****877.****************************985 PP

>> PGM_PMM_I  Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.6   0.0   3.2e-10   1.1e-07      90     122 ..      48      80 ..      35      94 .. 0.87
   2 !   30.6   0.2   6.8e-10   2.3e-07      22      93 ..     151     223 ..     129     229 .. 0.90

  Alignments for each domain:
  == domain 1  score: 31.6 bits;  conditional E-value: 3.2e-10
                 CECEEEEE--TTS-TTCCCEEEEETTTCE--CH CS
   PGM_PMM_I  90 kadagimitaSHnppeyngiKvylsnGgpispe 122
                 +++ g+m+taSHnp ++ngiK+++++Gg ++++
  KOO22631.1  48 GLAVGLMVTASHNPERDNGIKLVDPDGGMLDQS 80 
                 4789************************99886 PP

  == domain 2  score: 30.6 bits;  conditional E-value: 6.8e-10
                 HHHHHHHHHHHHCHHC.STS-EEEEEE-S-TTHHHHHHHHHHHHHCCT-CEEEEEEB-HHHHHHHHHHCCECE CS
   PGM_PMM_I  22 lveklgqaiaeylkae.akkkkvvvGrDtRvssrelaealaaglaanGvevillgllptPavsfairklkada 93 
                  v+++g+ +a++   + + +++v+++rDtR +s  la+ +++g+a++     ++g+l+tP +++++r+++ +a
  KOO22631.1 151 PVRAIGAILADHADDTsRLRGRVYIARDTRSHSARLARLALEGVAHAAGIGTDCGILTTPQLHHIVRHVNGSA 223
                 6889999999999999999*************************99888889****************99544 PP

>> AAA_lid_3  AAA+ lid domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.2       7.5   2.5e+03       5      22 ..     356     373 ..     354     376 .. 0.90
   2 !   32.7   0.0   1.4e-10   4.8e-08       2      37 ..    1006    1041 ..    1005    1051 .. 0.92
   3 !   40.2   1.6   6.1e-13   2.1e-10       1      35 [.    1281    1315 ..    1281    1323 .. 0.92

  Alignments for each domain:
  == domain 1  score: -1.7 bits;  conditional E-value: 7.5
   AAA_lid_3   5 keLAerTeGySGADlaal 22 
                 +++A++ + ++  +laal
  KOO22631.1 356 DKIAALFASFVCEELAAL 373
                 689*************99 PP

  == domain 2  score: 32.7 bits;  conditional E-value: 1.4e-10
   AAA_lid_3    2 vdlkeLAerTeGySGADlaalcreAallAlrrgike 37  
                  vdl++L + T+Gy+GADla+ + eAa+ ++r++++e
  KOO22631.1 1006 VDLEALSQDTQGYCGADLAQMVFEAAMQCVRDKLPE 1041
                  9*******************************9886 PP

  == domain 3  score: 40.2 bits;  conditional E-value: 6.1e-13
   AAA_lid_3    1 dvdlkeLAerTeGySGADlaalcreAallAlrrgi 35  
                  d+dl +LA rTeG+SGAD+ ++c++A  lA+r  i
  KOO22631.1 1281 DLDLRDLANRTEGFSGADITEVCQRACKLAIRGEI 1315
                  89******************************876 PP

>> MreB_Mbl  MreB/Mbl protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.0       2.6   8.9e+02       4      36 ..    1851    1892 ..    1849    1910 .. 0.53
   2 !   44.4   0.0   2.7e-14   9.1e-12      85     316 ..    1976    2219 ..    1960    2226 .. 0.77

  Alignments for each domain:
  == domain 1  score: -1.6 bits;  conditional E-value: 2.6
                  EEEEE-SSEEEE..EETTTEEEE.EE......ES-EEEETTT CS
    MreB_Mbl    4 lgiDLGtantlv..yvkgkgivl.ne......psvvAikkkt 36  
                  +giDLGt+   v  +++++  ++ n+      ps vA++ ++
  KOO22631.1 1851 VGIDLGTTYSCVgiWQNDRVEIIaNDqgnrttPSFVAFSDTE 1892
                  89******9988445555543331212222225555554443 PP

  == domain 2  score: 44.4 bits;  conditional E-value: 2.7e-14
                  HHTSS-SS--EEEEEE-SS--HHHHHHHHHHHHHTT-SEEEEEEHHHHHHHHTT--TTSSS..-EEEEEE-SS-EEEEEEETT.EEEEEEE....ES CS
    MreB_Mbl   85 vkkkkslskprvvicvPsgiteverrAvkeaakkaGarevllieeplaAAiGaglpveeps..gnmvvdiGggttevavislg.givtsks....vr 174 
                  +++      p+ v++vP   ++ +r   k+aa  aG +   +i+ep aAAi  gl+ + +s    ++ d+Gggt +v+++++  gi + k+     +
  KOO22631.1 1976 AESYLGKDVPNAVVTVPAYFNDSQRTSTKDAAAIAGINCLRIINEPTAAAIAYGLDKQSSSerNVLIFDLGGGTFDVSLLTIEeGIFEVKAtagdTH 2072
                  33334456799****************************************99999876541166999*************9636765554222268 PP

                  -SHHHHHHHHHHHH....HHHHS.EE--HHHH.HHHHHHH-BSS--HHHH.EEEEEEEETTTTCEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHTS CS
    MreB_Mbl  175 vaGdeldeaiikyi....rkkyn.lliGerta.ekikieigsavkeeeee.kmeikGrdlvtglpkevevsseevrealkepvsaiveavkevLekt 264 
                  ++G+++d+  +++     ++k++  + G++ a ++++++   a+ + +++ +++i+   l +g+    +++ ++ +e   + ++  +e v++vL++ 
  KOO22631.1 2073 LGGEDFDNRTVNHFvqefKRKHKkDMTGNARAmRRLRTACERAKRTLSSStQTSIEIDSLFEGIDFFSSITRARFEELNMDLFRGTMEPVEKVLRDS 2169
                  9******98877642333455541466765552678888888887766666999999*************************************987 PP

                  -HHHHHHHHHH-EEEESGGGGSBTHHHHHHHHHSS-.EEE-SSTTTHHHHHHH CS
    MreB_Mbl  265 ppeLaadivdrgivltGGgallkgldkllseetglp.vkvaedpltcvakGtg 316 
                  +  ++++ v + +vl+GG++ +  + +ll++ ++ +  + + +p ++va G++
  KOO22631.1 2170 K--MSKNQV-HDVVLVGGSTRIPKVIQLLTDFFNGKePSKSINPDEAVAYGAA 2219
                  5..555555.458899*************998875514556788888888875 PP

>> RuvB_N  Holliday junction DNA helicase RuvB P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.2   0.0   1.2e-06   0.00039      36      97 ..     853     922 ..     847     940 .. 0.78
   2 !   23.7   0.0   9.6e-08   3.3e-05      32      70 ..    1122    1160 ..    1089    1198 .. 0.77

  Alignments for each domain:
  == domain 1  score: 20.2 bits;  conditional E-value: 1.2e-06
      RuvB_N  36 vllyGpPGlGkttlakiiakelgvklkitsgPvl......ekagdlaalltnleek..dvlfideihrls 97 
                 vl++GpPG Gkt +ak +a+e g+ +    gP +      e ++ l   + + e++   +lfide+  ++
  KOO22631.1 853 VLIHGPPGCGKTMIAKAVAAETGAYFFLINGPEVmskmagESEQKLRQAFEECEKNspAILFIDELDAIA 922
                 9*******************************76332222234456666666666523599999998766 PP

  == domain 2  score: 23.7 bits;  conditional E-value: 9.6e-08
      RuvB_N   32 aldhvllyGpPGlGkttlakiiakelgvklkitsgPvle 70  
                  a   vl+yGpPG Gkt lak ia+e ++++ +  gP l 
  KOO22631.1 1122 AAKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELL 1160
                  56779*******************************874 PP

>> PGM_PMM_IV  Phosphoglucomutase/phosphomannomutase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.1   0.3   2.1e-13   7.1e-11      23      69 ..     535     585 ..     513     588 .. 0.78
   2 ?   -1.4   0.0       7.9   2.7e+03      24      39 ..    1453    1468 ..    1420    1470 .. 0.77

  Alignments for each domain:
  == domain 1  score: 42.1 bits;  conditional E-value: 2.1e-13
                 H.....HCCCCCCCCGCCEEEE.EEEETTCCEEEEEEEESSHHHHHHHHHHH CS
  PGM_PMM_IV  23 a.....sikeglkilledGrrlavRpSGTepllrvyvEaksdeelarlaeev 69 
                 a     ++ + l+ ++++Gr + vRpSGTe+++rvy+Ea ++e +++la  v
  KOO22631.1 535 ApadlqPELDQLAARFARGRCF-VRPSGTEDVVRVYAEAATQEDANELALLV 585
                 23445579999***********.***********************998765 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 7.9
                  HCCCCCCCCGCCEEEE CS
  PGM_PMM_IV   24 sikeglkilledGrrl 39  
                  + +++ + + +dGrrl
  KOO22631.1 1453 KVSQASRRVEQDGRRL 1468
                  57999**********9 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.8   0.0     7e-09   2.4e-06       2     137 ..     853    1015 ..     853    1019 .. 0.86
   2 !   14.6   0.0   8.4e-05     0.029       2      43 ..    1126    1169 ..    1126    1219 .. 0.85

  Alignments for each domain:
  == domain 1  score: 27.8 bits;  conditional E-value: 7e-09
      AAA_33    2 vllvGlpGsGKstlaerllkklg..avllssdtlrrrlfgtdqqskt............................dytrvldrlyqilnelarkals 68  
                  vl++G+pG+GK+  a+ +++++g  ++l++ ++++++++g+ +q+++                             + +v++r+  ++  l  +  s
  KOO22631.1  853 VLIHGPPGCGKTMIAKAVAAETGayFFLINGPEVMSKMAGESEQKLRqafeeceknspailfideldaiaprrdkAQGEVEKRIVSQMLTLM-DGIS 948 
                  789*********************9999************8777777789999999999999999999999998777779999888886666.7899 PP

      AAA_33   69 agrnvildatnlsrrerarflklarrlgvpvrivvvetdeetlkeRlakRaangddrsevpeealdrqk 137 
                   + +v++ a   ++++ +  l+ + r++ ++ i v +t  ++   R++ R+ +  ++ ev++eal + +
  KOO22631.1  949 PKSQVVVMAATNRPNAVEPALRRFGRFDLEINIPVPDTAGRLDILRIKTREMR-LSP-EVDLEALSQDT 1015
                  99999999999999999999999999999999999999999999999999884.444.78888877655 PP

  == domain 2  score: 14.6 bits;  conditional E-value: 8.4e-05
      AAA_33    2 vllvGlpGsGKstlaerllkklg..avllssdtlrrrlfgtdqq 43  
                  vl+ G+pG+GK+ la+ ++++ +  ++ +  ++l+++ fg+ + 
  KOO22631.1 1126 VLFYGPPGCGKTLLAKAIANECQanFISVKGPELLTKWFGESEA 1169
                  799*****************999888889999999999985443 PP

>> CDC48_N  Cell division protein 48 (CDC48), N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.7   0.0   2.4e-12   8.2e-10       4      83 ..     633     712 ..     631     715 .. 0.88

  Alignments for each domain:
  == domain 1  score: 38.7 bits;  conditional E-value: 2.4e-12
                 EECCSS-CSSTTEEEE-HHHHHHHTS-TTSEEEEECCCC..EEEEEEEBSTTSTTTTEEEE-HHHHHHHT--TTEEEEEEEE CS
     CDC48_N   4 Vaeapqedvgrgivridpedmeelglepgdvveiegkrk..TvaivwpaepedegkgiIrmdgvtRknagvsiGdkVtVrka 83 
                 V ea + d + + + ++p+++++lgl +gd+v+++gkr   T + + +++     +g++ +++vtR+n+++++G++ +  ++
  KOO22631.1 633 VVEAGEADQDGSTALLHPKKLAQLGLMEGDIVRLKGKRDrdTLCTAQESAAV--PEGSVVLSAVTRTNLNLNLGETTKAYRC 712
                 678888899***************************6554799999999988..47*******************9776665 PP

>> AAA_2  AAA domain (Cdc48 subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.2   0.0     3e-06     0.001       6     105 ..     853     946 ..     848     953 .. 0.82
   2 !   18.3   0.0   5.7e-06    0.0019       6     104 ..    1126    1221 ..    1123    1228 .. 0.79

  Alignments for each domain:
  == domain 1  score: 19.2 bits;  conditional E-value: 3e-06
                 EEEE--TTSSHHHHHHHHHHHTT-....-EEEEEGGG-------THHHHHHHHHTTT-HHHHTTS..EEEEETGGG----.---------HHHHHHHHH CS
       AAA_2   6 illlgptgvGktelakalaellfvkkekkliradaselleeeevehlvsrligappgyvgaeegG..ivllDEidKihpk.essgadvSregVqrdLLq 101
                 +l+ gp g+Gkt++aka+a    +     +  ++  e++     +   ++++  +++  + e++   i+++DE+d i+p+ ++++ +v +  ++  +L 
  KOO22631.1 853 VLIHGPPGCGKTMIAKAVAAETGA----YFFLINGPEVMS----KMAGESEQKLRQAFEECEKNSpaILFIDELDAIAPRrDKAQGEVEK-RIVSQMLT 942
                 6899****************9995....9***********....77777777777777777777777************96666666655.56666778 PP

                 HHH- CS
       AAA_2 102 ileg 105
                 +++g
  KOO22631.1 943 LMDG 946
                 8886 PP

  == domain 2  score: 18.3 bits;  conditional E-value: 5.7e-06
                  EEEE--TTSSHHHHHHHHHHHTT-....-EEEEEGGG-------THHHHHHHHHTTT-HHHHTTS..EEEEETGGG----.--------..-HHHHH CS
       AAA_2    6 illlgptgvGktelakalaellfvkkekkliradaselleeeevehlvsrligappgyvgaeegG..ivllDEidKihpk.essgadvS..regVqr 97  
                  +l+ gp g+Gkt+laka+a+  ++    ++i +   ell+    +   +++   ++   +a +    ++++DE+d i++  +s g   S  ++ V +
  KOO22631.1 1126 VLFYGPPGCGKTLLAKAIANECQA----NFISVKGPELLT----KWFGESEANVRELFDKARQASpcVIFFDEMDSIAKArGSGGGGASeaGDRVIN 1214
                  689*******************96....************....77777777777777777777677************986666555511455777 PP

                  HHHHHHH CS
       AAA_2   98 dLLqile 104 
                   +L  ++
  KOO22631.1 1215 QILTEID 1221
                  7776555 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.4   0.0   2.4e-06   0.00082       1     124 [.     852     963 ..     852     972 .. 0.66
   2 !   13.5   0.0   0.00016     0.055       2      38 ..    1126    1162 ..    1125    1197 .. 0.69

  Alignments for each domain:
  == domain 1  score: 19.4 bits;  conditional E-value: 2.4e-06
                 EEEEE--SSSSHHHHHHHGGGGBS--EEEEE--TT--HHHHH--B--.........--------.....G-SEEEEESGGG--...HHHHHHHHHHHHS CS
       AAA_5   1 dvlLvGppGtgKselaerlaaalnreveyvqltrdtteedlkgrreikngttslvdsplvraar.....egeilvlDEverae...sevlnsLlsllee 91 
                 +vl+ GppG+gK+++a+ +aa +++ ++ +++++ +++  + g+ e          ++l +a++     +++il++DE++ +    +++++++ + +  
  KOO22631.1 852 GVLIHGPPGCGKTMIAKAVAAETGAYFFLINGPEVMSK--MAGESE----------QKLRQAFEeceknSPAILFIDELDAIAprrDKAQGEVEKRIVS 938
                 5899******************************8875..566666..........5556555556588999999999998762223344444333333 PP

                 SEEE..-SSSEEE---......-EEEEEESS-- CS
       AAA_5  92 rrllleeggelvkaknddllerfrviatanpld 124
                 + l l++g            +++ v+a++n+++
  KOO22631.1 939 QMLTLMDGISPK--------SQVVVMAATNRPN 963
                 333333332222........2266666666666 PP

  == domain 2  score: 13.5 bits;  conditional E-value: 0.00016
                  EEEE--SSSSHHHHHHHGGGGBS--EEEEE--TT--H CS
       AAA_5    2 vlLvGppGtgKselaerlaaalnreveyvqltrdtte 38  
                  vl  GppG+gK+ la+ +a   ++++  v +++ +t+
  KOO22631.1 1126 VLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTK 1162
                  899*****************99999998888875554 PP

>> AAA_14  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.0   2.3e-05    0.0078       5      76 ..     853     921 ..     850     956 .. 0.80
   2 !   13.9   0.0   0.00012     0.041       5      79 ..    1126    1197 ..    1123    1233 .. 0.80

  Alignments for each domain:
  == domain 1  score: 16.2 bits;  conditional E-value: 2.3e-05
      AAA_14   5 lvitGaRrvGKTtllkqlikellvkkesilyinldderdkkladpe.kllelileklkeekktylflDEiqev 76 
                 ++i G+  +GKT+++k ++ e       ++ in  +   k++ ++e kl +++ e  k +   +lf+DE   +
  KOO22631.1 853 VLIHGPPGCGKTMIAKAVAAETG---AYFFLINGPEVMSKMAGESEqKLRQAFEECEK-NSPAILFIDELDAI 921
                 79*****************9999...88999999888877766555367777777654.5999******9876 PP

  == domain 2  score: 13.9 bits;  conditional E-value: 0.00012
      AAA_14    5 lvitGaRrvGKTtllkqlikellvkkesilyinldderdkkladpekllelileklkeekktylflDEiqevpew 79  
                  ++  G+  +GKT l+k +++e      +++ ++  +  +k + ++e + +++++k+++    ++f+DE+  + ++
  KOO22631.1 1126 VLFYGPPGCGKTLLAKAIANECQ---ANFISVKGPELLTKWFGESEANVRELFDKARQASPCVIFFDEMDSIAKA 1197
                  5678999*******999997766...7787777777777777776666666666655558899*****9988655 PP

>> AAA_28  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.0   4.7e-05     0.016       2     111 ..     853     977 ..     852    1004 .. 0.72
   2 !   10.6   0.0    0.0015      0.51       2      37 ..    1126    1166 ..    1125    1195 .. 0.75
   3 ?   -1.8   0.8       9.5   3.2e+03     129     155 ..    1471    1497 ..    1453    1570 .. 0.65

  Alignments for each domain:
  == domain 1  score: 15.5 bits;  conditional E-value: 4.7e-05
      AAA_28   2 ivitGgestGKTtlleaLaar.gypvv....pEaareileeklakgedalpwve..........dllafaervleeqleeeaaaaankvlfcDrglldt 85 
                 + i G++++GKT +++a aa+ g   +    pE++ ++  e  +k ++a ++ e          +l a+a r+ ++q e e++  ++ ++++D  ++ +
  KOO22631.1 853 VLIHGPPGCGKTMIAKAVAAEtGAYFFlingPEVMSKMAGESEQKLRQAFEECEknspailfidELDAIAPRRDKAQGEVEKRIVSQMLTLMDGISPKS 951
                 6899***************87654433237899999988777776666665442356677777788888888888888888888888888888888888 PP

      AAA_28  86 laYarayggeaeaelea.aarekrydl 111
                  +   a  ++ ++++e    r+ r dl
  KOO22631.1 952 QVVVMAATNR-PNAVEPaLRRFGRFDL 977
                 7777777776.6666641444666666 PP

  == domain 2  score: 10.6 bits;  conditional E-value: 0.0015
      AAA_28    2 ivitGgestGKTtlleaLaar...gypvv..pEaareilee 37  
                  + + G++++GKT l++a+a++   ++  v  pE  ++ + e
  KOO22631.1 1126 VLFYGPPGCGKTLLAKAIANEcqaNFISVkgPELLTKWFGE 1166
                  6799***************7655544333477777666644 PP

  == domain 3  score: -1.8 bits;  conditional E-value: 9.5
      AAA_28  129 edleereaiderlrealrelgipviiv 155 
                  e+ +  ++++e+++++++e+   +++ 
  KOO22631.1 1471 ETSDMCADLEELCLQIYEEHEAALAEE 1497
                  444555555555555555554444333 PP

>> TIP49  TIP49 P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.0   1.9e-05    0.0064      51     101 ..     851     900 ..     847     908 .. 0.86
   2 !   11.5   0.0   0.00037      0.12      49      93 ..    1122    1164 ..    1118    1179 .. 0.82

  Alignments for each domain:
  == domain 1  score: 15.7 bits;  conditional E-value: 1.9e-05
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXX CS
       TIP49  51 ravLlaGpsgtGktalaiaiskelgedvpfvalsgsevyslevkktev.ltq 101
                 r+vL+ Gp+g Gkt +a a++ e g    f  ++g ev s     +e  l q
  KOO22631.1 851 RGVLIHGPPGCGKTMIAKAVAAETG--AYFFLINGPEVMSKMAGESEQkLRQ 900
                 89*********************99..7899********9987777632444 PP

  == domain 2  score: 11.5 bits;  conditional E-value: 0.00037
                  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
       TIP49   49 aGravLlaGpsgtGktalaiaiskelgedvpfvalsgsevyslev 93  
                  a ++vL+ Gp+g Gkt la ai++e      f++++g e+ +   
  KOO22631.1 1122 AAKGVLFYGPPGCGKTLLAKAIANECQ--ANFISVKGPELLTKWF 1164
                  569**********************87..6799999988876655 PP

>> RNA_helicase  RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.2   0.0    0.0011      0.38       1      36 [.     853     888 ..     853     934 .. 0.82
   2 !   15.5   0.0     5e-05     0.017       1      34 [.    1126    1164 ..    1126    1197 .. 0.65

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.0011
  RNA_helicase   1 iwlyGpsgeGKStlakeLakallkklklkkkdsvys 36 
                   ++++Gp+g+GK+++ak +a++    + l++ ++v+s
    KOO22631.1 853 VLIHGPPGCGKTMIAKAVAAETGAYFFLINGPEVMS 888
                   689**************9998877665555555544 PP

  == domain 2  score: 15.5 bits;  conditional E-value: 5e-05
  RNA_helicase    1 iwlyGpsgeGKStlakeLakallkkl.....klkkkdsv 34  
                    +++yGp+g+GK++lak +a++ + ++      +  ++++
    KOO22631.1 1126 VLFYGPPGCGKTLLAKAIANECQANFisvkgPELLTKWF 1164
                    689*****************9997776665533333444 PP

>> Viral_helicase1  Viral (Superfamily 1) RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.3   0.0    0.0013      0.44       2      70 ..     854     917 ..     853     923 .. 0.65
   2 !   15.4   0.0   3.6e-05     0.012       5      71 ..    1130    1191 ..    1126    1195 .. 0.87

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.0013
  Viral_helicase1   2 vvhGvpGcGKStlirkllrts..liltvnrptaelltegkpklpnlsvrtvdsflmalvkstkgkililDE 70 
                      ++hG pGcGK+ + + ++ +   + + +n p  e+ ++ + +++++    +++++++        il++DE
       KOO22631.1 854 LIHGPPGCGKTMIAKAVAAETgaYFFLINGP--EVMSKMAGESEQKLRQAFEECEKNS-----PAILFIDE 917
                      79**********9888888867655555555..4444444344444344455555554.....45899998 PP

  == domain 2  score: 15.4 bits;  conditional E-value: 3.6e-05
  Viral_helicase1    5 GvpGcGKStlirkllrts.liltvnrptaelltegkpklpnlsvrtvdsflmalvkstkgkililDEy 71  
                       G pGcGK+ l + +++++  ++ +++   ellt+++ +++++  + +d++ +a  +     ++++DE 
       KOO22631.1 1130 GPPGCGKTLLAKAIANECqANFISVKG-PELLTKWFGESEANVRELFDKARQASPC-----VIFFDEM 1191
                       78****************977777777.8*******99999999999999998765.....7999995 PP

>> PGM_PMM_III  Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.1   0.2   5.4e-09   1.8e-06       1      97 [.     354     452 ..     354     493 .. 0.84

  Alignments for each domain:
  == domain 1  score: 28.1 bits;  conditional E-value: 5.4e-09
                  HHHHHHHHHHHHHHCH....CSTTT..CEEEEETTS-THHHHHHHHTT-EEEEESSSCHHHHHHHHHTTECEEEETTCEEEETTTBSS--HHHHHHHH CS
  PGM_PMM_III   1 dgdqllallakyllee....klkpg..agvvktvmtslalervakklgiklvetkvGdkyvleemkeegavlGgEeSghiifldeattkDGilaallv 92 
                  dgd+++al+a  ++ee     lkp   ++vv+t   + a  +++++lg+++  +k+G kyv     + ++ + +E +gh+ +l      D+++ a++ 
   KOO22631.1 354 DGDKIAALFASFVCEElaalALKPAlsTVVVQTAYANGASGEYIRSLGVPVRLAKTGVKYVHHVATQFDVAIYFEANGHGTLLFS----DAAVEAIRG 447
                  79*************99988566556558**************************************************998855....555555555 PP

                  HHHHH CS
  PGM_PMM_III  93 leila 97 
                  ++ +a
   KOO22631.1 448 AQTAA 452
                  55444 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.8   0.1   1.2e-06   0.00041      24     132 ..     849     949 ..     822     956 .. 0.55
   2 !   15.8   0.0     4e-05     0.013      25      61 ..    1124    1157 ..    1113    1167 .. 0.82
   3 ?    3.4   0.0      0.26        89     123     147 ..    1171    1194 ..    1166    1209 .. 0.86
   4 ?   -1.4   0.5       7.8   2.6e+03      82     145 ..    1761    1828 ..    1712    1840 .. 0.56

  Alignments for each domain:
  == domain 1  score: 20.8 bits;  conditional E-value: 1.2e-06
      AAA_16  24 p.elvllsGesGvGKsslvrellralekdggiflrgkcdql..esa....ipysa.laqalareellrqlldeaesaeleawrekleealaavpelaga 114
                 p + vl++G++G+GK+ ++++++    ++g++f+  +  +   ++a      + + + ++ +             ++ +  + ++l++ +   +++ g+
  KOO22631.1 849 PpRGVLIHGPPGCGKTMIAKAVAA---ETGAYFFLINGPEVmsKMAgeseQKLRQaFEECEK-------------NSPAILFIDELDAIAPRRDKAQGE 931
                 3599*******************4...55678855555555122221111222221222222.............222222222222222233333333 PP

      AAA_16 115 easrllellkrllallsr 132
                  ++r+  ++  l++ +s+
  KOO22631.1 932 VEKRIVSQMLTLMDGISP 949
                 336777777766666666 PP

  == domain 2  score: 15.8 bits;  conditional E-value: 4e-05
      AAA_16   25 elvllsGesGvGKsslvrellralekdggiflrgkcd 61  
                    vl++G++G+GK+ l+++++++ +++   f++ k  
  KOO22631.1 1124 KGVLFYGPPGCGKTLLAKAIANECQAN---FISVKGP 1157
                  689******************988887...6666655 PP

  == domain 3  score: 3.4 bits;  conditional E-value: 0.26
      AAA_16  123 lkrllallsrderplvlvlDdlqwa 147 
                  +++l++++++ ++p v+++D+++ +
  KOO22631.1 1171 VRELFDKARQ-ASPCVIFFDEMDSI 1194
                  57888999*9.999********965 PP

  == domain 4  score: -1.4 bits;  conditional E-value: 7.8
      AAA_16   82 lrqlldeaesaeleawrekleealaavpelagaea......srllellkrllallsrderplvlvlDdlq 145 
                   r+l+ +  s+el++ r++l+ + a+ + l+++         +l   l++  + +++++r lv + D lq
  KOO22631.1 1761 ARALAKA--SNELAEMRAALRHSKAQLGTLSAERQthatalASLETRLRQVGSITEEQARYLVTLSDALQ 1828
                  3333322..2223333333322222222222222233344466666666666666666666666666666 PP

>> Mg_chelatase  Magnesium chelatase, subunit ChlI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.0   0.1   0.00029       0.1      25      43 ..     853     871 ..     843     874 .. 0.90
   2 !   12.2   0.0   0.00026     0.089      24      43 ..    1125    1144 ..    1118    1148 .. 0.88

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 0.00029
  Mg_chelatase  25 lllvGppGsGKtmlakrlp 43 
                   +l+ GppG+GKtm+ak+++
    KOO22631.1 853 VLIHGPPGCGKTMIAKAVA 871
                   799************9875 PP

  == domain 2  score: 12.2 bits;  conditional E-value: 0.00026
  Mg_chelatase   24 nlllvGppGsGKtmlakrlp 43  
                     +l++GppG+GKt+lak+++
    KOO22631.1 1125 GVLFYGPPGCGKTLLAKAIA 1144
                    589**************985 PP

>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.0   0.0    0.0057       1.9       6      35 ..     845     874 ..     843     941 .. 0.88
   2 !   12.6   0.0   0.00043      0.14       7      67 ..    1119    1177 ..    1117    1230 .. 0.73
   3 ?   -0.1   1.1       3.5   1.2e+03      42      99 ..    2346    2433 ..    2334    2445 .. 0.66

  Alignments for each domain:
  == domain 1  score: 9.0 bits;  conditional E-value: 0.0057
                 EEEETTSEEEEEESTTSSHHHHHHHHTTSS CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran   6 lklkegekvaivGenGaGKStLlkllagll 35 
                 + +++ + v i G+ G+GK+ ++k++a ++
  KOO22631.1 845 VGVRPPRGVLIHGPPGCGKTMIAKAVAAET 874
                 6677778899***************99875 PP

  == domain 2  score: 12.6 bits;  conditional E-value: 0.00043
                  EEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGGB-HHHCCHCEEEE-SS CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran    7 klkegekvaivGenGaGKStLlkllagllkpteGeilldgkdlkeqeleslrkeigvlpqe 67  
                   +++ + v + G+ G+GK+ L+k++a++ +  +  i ++g +l ++   +++++++ l+ +
  KOO22631.1 1119 GMNAAKGVLFYGPPGCGKTLLAKAIANECQ--ANFISVKGPELLTKWFGESEANVRELFDK 1177
                  6778888999****************9975..56666677777666666666666655555 PP

  == domain 3  score: -0.1 bits;  conditional E-value: 3.5
                  EEET..TCEGGGB-HHHCCHCEEEE-SS--S-TTSBHHHH.............................HHHTCHHHHHHHSTTGGTTC CS
                  xxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.............................xxxxxxxxxxxxxxxxxxxx RF
    ABC_tran   42 illd..gkdlkeqeleslrkeigvlpqepqlfpeltvren.............................esdeeiekalsklglkelkd 99  
                  i++   +  l++++ e++ +  + + +e++lf+++ v+++                             ++++ i++al++l+ ++l++
  KOO22631.1 2346 ITITndKSRLSKEDVEKMTADAERFAKEDELFKKK-VESKnglenycysmkntiqddklkdkistddkaKAEKAIDDALKWLESNQLAE 2433
                  44441144445577777777777777777777777.54445777777777777777777777766665666666999999998887654 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.5   0.0     0.001      0.34       1      25 [.     853     883 ..     853     950 .. 0.78
   2 !   11.6   0.0   0.00091      0.31       1      25 [.    1126    1168 ..    1126    1201 .. 0.72

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.001
      AAA_18   1 IlltGtpGvGKttlakeLskrl.gf.....g 25 
                 +l+ G+pG+GKt +ak+++ ++ ++     g
  KOO22631.1 853 VLIHGPPGCGKTMIAKAVAAETgAYfflinG 883
                 7899**************9997444544441 PP

  == domain 2  score: 11.6 bits;  conditional E-value: 0.00091
      AAA_18    1 IlltGtpGvGKttlakeLskrl.gf.................g 25  
                  +l  G+pG+GKt lak++++++ ++                  
  KOO22631.1 1126 VLFYGPPGCGKTLLAKAIANECqANfisvkgpelltkwfgesE 1168
                  6789****************98433455554444444444442 PP

>> IstB_IS21  IstB-like ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.0   0.0    0.0015      0.52      48     116 ..     851     917 ..     841     937 .. 0.68
   2 !   12.8   0.0   0.00022     0.073      45      74 ..    1121    1150 ..    1110    1155 .. 0.85

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.0015
   IstB_IS21  48 enivllGpsGvGKshlaialgveavraglsvlfvrvedLveelkrarrdgklaralkrllkv..dllilDd 116
                  ++++ Gp+G GK+ +a a++ e   +g   + +  ++++++++ + +++kl +a +++ k   ++l +D+
  KOO22631.1 851 RGVLIHGPPGCGKTMIAKAVAAE---TGAYFFLINGPEVMSKMAGE-SEQKLRQAFEECEKNspAILFIDE 917
                 5789**************99754...45555555556666665543.334455555554443235555555 PP

  == domain 2  score: 12.8 bits;  conditional E-value: 0.00022
   IstB_IS21   45 ekkenivllGpsGvGKshlaialgveavra 74  
                  ++++++++ Gp+G GK+ la a++ e  ++
  KOO22631.1 1121 NAAKGVLFYGPPGCGKTLLAKAIANECQAN 1150
                  567899*****************9986555 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.1   6.5e-05     0.022       8      46 ..     853     904 ..     848     956 .. 0.65
   2 !   11.8   0.0   0.00063      0.21       8      40 ..    1126    1149 ..    1120    1201 .. 0.83

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 6.5e-05
      AAA_22   8 lvvtGesGtGKTtllrrlleqldeeakaee.............erpevvfvt 46 
                 ++++G++G+GKT+ ++ ++ +  ++ +  +             ++ +++f +
  KOO22631.1 853 VLIHGPPGCGKTMIAKAVAAETGAYFFLINgpevmskmageseQKLRQAFEE 904
                 68******************99777666665555555555444444444444 PP

  == domain 2  score: 11.8 bits;  conditional E-value: 0.00063
      AAA_22    8 lvvtGesGtGKTtllrrlleqldeeakaeeerp 40  
                  ++ +G++G+GKT+l++ ++++          ++
  KOO22631.1 1126 VLFYGPPGCGKTLLAKAIANEC---------QA 1149
                  6789**************9986.........33 PP

>> Molydop_binding  Molydopterin dinucleotide binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.3   0.0         1   3.4e+02      41      68 ..     515     542 ..     510     581 .. 0.86
   2 !   20.8   0.0   9.1e-07   0.00031      28      78 ..     641     693 ..     626     717 .. 0.85

  Alignments for each domain:
  == domain 1  score: 1.3 bits;  conditional E-value: 1
                      HHT--TT-EEEEEETTEEEEEEEEEESS CS
  Molydop_binding  41 alGikdGdlVevesrrGsvevrakvter 68 
                      +l ++d  +V+v+s+  +++++a + ++
       KOO22631.1 515 KLAVADRTIVTVTSDETRTTAPADLQPE 542
                      678999*****************88775 PP

  == domain 2  score: 20.8 bits;  conditional E-value: 9.1e-07
                      SS.-EEEEEHHHHHHHT--TT-EEEEEETTE.EEEEEEEEESSB-TTEEEEES CS
  Molydop_binding  28 ep.evveinpedAaalGikdGdlVevesrrG.svevrakvtervrpGvvfmpf 78 
                      ++ ++++++p+++a+lG+ +Gd+V+++ +r   + + a+ + +v++G+v++  
       KOO22631.1 641 QDgSTALLHPKKLAQLGLMEGDIVRLKGKRDrDTLCTAQESAAVPEGSVVLSA 693
                      335799*************************88999*************9865 PP

>> Vps4_C  Vps4 C terminal oligomerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.4   0.1         2   6.7e+02      20      44 ..    1050    1074 ..    1038    1081 .. 0.75
   2 !   19.5   0.0   2.2e-06   0.00074      28      59 ..    1340    1371 ..    1322    1372 .. 0.88

  Alignments for each domain:
  == domain 1  score: 0.4 bits;  conditional E-value: 2
      Vps4_C   20 psdklleP.pvtlkDflkalkkarpt 44  
                  p +k+l   +v+ ++f +alk + p+
  KOO22631.1 1050 P-KKILDSlQVSPEHFRRALKLTNPS 1074
                  3.455555599**********99998 PP

  == domain 2  score: 19.5 bits;  conditional E-value: 2.2e-06
      Vps4_C   28 pvtlkDflkalkkarptVskeDLekheeFTke 59  
                   ++  +f++a+++ar++Vsk++L+++ +F ke
  KOO22631.1 1340 LLSKAHFDDAMRTARKSVSKTELARYLKFKKE 1371
                  68999************************998 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.4   0.1    0.0014      0.47       3      22 ..     853     872 ..     851     876 .. 0.88
   2 ?   -0.7   0.0       3.5   1.2e+03      77     134 ..     905     967 ..     887     980 .. 0.59
   3 !    9.2   0.0    0.0031       1.1       3      25 ..    1126    1148 ..    1124    1154 .. 0.88
   4 ?   -2.0   0.1         9   3.1e+03     111     152 ..    1692    1730 ..    1662    1735 .. 0.84

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.0014
                 EEEEC-TTTCHHHHHHHHHH CS
       NACHT   3 vilqGeaGsGKTtLlqklal 22 
                 v+++G++G+GKT+ ++ +a 
  KOO22631.1 853 VLIHGPPGCGKTMIAKAVAA 872
                 89*************99986 PP

  == domain 2  score: -0.7 bits;  conditional E-value: 3.5
                 CCSCCCEEEEEE-STT-SS-TCH.............HHHHHCTTTTT--EEEE...EEECCCHHH CS
       NACHT  77 lelperlLlilDglDelvtdlgq....kekqpvrtlLselirkkllpeaslll...tvrpralrd 134
                 +e    + l +D lD ++   ++     ek+ v + + +l+ + + p++ +++   t rp+a++ 
  KOO22631.1 905 CEKNSPAILFIDELDAIAPRRDKaqgeVEKRIVSQ-MLTLMDG-ISPKSQVVVmaaTNRPNAVEP 967
                 56666667778****99988777778533333444.4467777.444444443111445555544 PP

  == domain 3  score: 9.2 bits;  conditional E-value: 0.0031
                  EEEEC-TTTCHHHHHHHHHHHHC CS
       NACHT    3 vilqGeaGsGKTtLlqklalawa 25  
                  v+  G++G+GKT L++ +a + +
  KOO22631.1 1126 VLFYGPPGCGKTLLAKAIANECQ 1148
                  6789**************98865 PP

  == domain 4  score: -2.0 bits;  conditional E-value: 9
                  HHHCTTTTT--EEEEEEECCCHHHHCTTSSCE..EEEE--TC CS
       NACHT  111 elirkkllpeasllltvrpralrdleeqleeaivlevegfse 152 
                  e++ +  l+e    l+vr  +  ++ e lee   ++++++++
  KOO22631.1 1692 EWVAE--LREQQTTLSVRKANAAEVNERLEEM-EMQLGSLTR 1730
                  67888..9999999****************99.888888876 PP

>> AAA_17  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.3   0.0    0.0021       0.7       2      49 ..     857     908 ..     856     947 .. 0.70
   2 !    9.2   0.0    0.0046       1.5       1      26 [.    1129    1154 ..    1129    1215 .. 0.67

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.0021
                 E-TTSSHHHHHHHHHHHHT..EEEEEHHHHHHHHHHTTT..SHSSHHHHCTS CS
      AAA_17   2 GgPGsGKgtqceklvekyg..fthlsaGdllreeakrgg..lakardemrkl 49 
                 G+PG+GK+ +++ ++ + g  f  ++  +++ ++a +++  l +a++e +k+
  KOO22631.1 857 GPPGCGKTMIAKAVAAETGayFFLINGPEVMSKMAGESEqkLRQAFEECEKN 908
                 9**************9985326677888888888866641144455544444 PP

  == domain 2  score: 9.2 bits;  conditional E-value: 0.0046
                  EE-TTSSHHHHHHHHHHHHTEEEEEH CS
      AAA_17    1 lGgPGsGKgtqceklvekygfthlsa 26  
                  +G+PG+GK+ +++ ++ + +  ++s 
  KOO22631.1 1129 YGPPGCGKTLLAKAIANECQANFISV 1154
                  7***************9986666654 PP

>> Rad17  Rad17 P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.3   0.0    0.0007      0.24      46      80 ..     851     884 ..     841     951 .. 0.68
   2 !    8.0   0.0    0.0071       2.4      48     111 ..    1126    1190 ..    1110    1198 .. 0.74

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.0007
       Rad17  46 riLLisGPsGCgkstvvkvLskelgiklrewlnpv 80 
                 r +Li GP+GCgk+ + k ++ e g  +   +n+ 
  KOO22631.1 851 RGVLIHGPPGCGKTMIAKAVAAETGAYFF-LINGP 884
                 5689*****************99987543.44443 PP

  == domain 2  score: 8.0 bits;  conditional E-value: 0.0071
       Rad17   48 LLisGPsGCgkstvvkvLskelgiklrewlnpvslkepdn.qksdfkgltekesrflsqiesfke 111 
                  +L  GP+GCgk+   k ++ e   +++    p +l +     + +++ l++k  +  + +  f e
  KOO22631.1 1126 VLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTKWFGeSEANVRELFDKARQASPCVIFFDE 1190
                  6889****************999999988888776443223566666666666655555555555 PP

>> Bac_DnaA  Bacterial dnaA  protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.3   0.0    0.0028      0.94      37     185 ..     853    1003 ..     847    1018 .. 0.73
   2 !    8.2   0.0    0.0059         2      36      64 ..    1125    1153 ..    1118    1169 .. 0.87

  Alignments for each domain:
  == domain 1  score: 9.3 bits;  conditional E-value: 0.0028
                  EEEE-SSSSSHHHHHHHHHHHHHHHSSSS-EEEEEHHHHHHHHHHHHHTT-HHHHHHHHT.T-SEEEEE-GGGGTT-.HHHHHH........HHHHH CS
    Bac_DnaA   37 lfiygevGlGktHLlkaignevlenapelrvvYltaeeFlnelvkalrdkkaeefkeklr.kvDvLliDDiqflagk.ektqee........lfhtf 123 
                  ++i+g+ G Gkt + ka++ e+      +    +++ e +++++   ++k  ++f e  + +  +L iD++  +a + +k q e        +++++
  KOO22631.1  853 VLIHGPPGCGKTMIAKAVAAET-----GAYFFLINGPEVMSKMAGESEQKLRQAFEECEKnSPAILFIDELDAIAPRrDKAQGEvekrivsqMLTLM 944 
                  79**********9999998765.....5667899************9999999**998773567999*****9985414444331111111144455 PP

                  HHHHTTT-EEEEEESS-TTT-SS--HHHHHHHHSSEEEE-----HHHHHHHHHHHHHHTT-- CS
    Bac_DnaA  124 nalleegkqvvlssDrsPkeleeledrlrsrfeaGlvvdieppdletrlailkkkieaekle 185 
                  + +  +++ vv+++   P+++e    r+  rf   l ++i  pd+  rl+il+ k ++ +l 
  KOO22631.1  945 DGISPKSQVVVMAATNRPNAVEPALRRF-GRF--DLEINIPVPDTAGRLDILRIKTREMRLS 1003
                  5555577788899999999987655444.455..58899999**********9887776654 PP

  == domain 2  score: 8.2 bits;  conditional E-value: 0.0059
                  -EEEE-SSSSSHHHHHHHHHHHHHHHSSS CS
    Bac_DnaA   36 PlfiygevGlGktHLlkaignevlenape 64  
                   +++yg+ G Gkt L kai+ne ++n+ +
  KOO22631.1 1125 GVLFYGPPGCGKTLLAKAIANECQANFIS 1153
                  589*******************9998765 PP

>> NB-ARC  NB-ARC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.5   0.0    0.0061       2.1      23      43 ..     853     873 ..     849     877 .. 0.88
   2 !    9.0   0.0    0.0021      0.72      23      44 ..    1126    1147 ..    1114    1154 .. 0.82

  Alignments for each domain:
  == domain 1  score: 7.5 bits;  conditional E-value: 0.0061
                 EEEEESTTSSHHHHHHHHCCS CS
      NB-ARC  23 valvGmgGvGKttlakqilnk 43 
                 v ++G +G+GKt +ak +  +
  KOO22631.1 853 VLIHGPPGCGKTMIAKAVAAE 873
                 679*************98765 PP

  == domain 2  score: 9.0 bits;  conditional E-value: 0.0021
                  EEEEESTTSSHHHHHHHHCCSH CS
      NB-ARC   23 valvGmgGvGKttlakqilnks 44  
                  v ++G +G+GKt lak i n+ 
  KOO22631.1 1126 VLFYGPPGCGKTLLAKAIANEC 1147
                  789***************9984 PP

>> Cytidylate_kin2  Cytidylate kinase-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.0   0.0     0.001      0.34       4     100 ..     855     955 ..     853     958 .. 0.68
   2 ?    7.0   0.0     0.018         6       8      57 ..    1132    1182 ..    1129    1231 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.001
  Cytidylate_kin2   4 IsreyGsgGetigeaLAekLglpfydr...eiieevakelglseeev.eevdersrlssflskllaarvagdtldeklddelfeaqervirela 93 
                      I +  G+g++ i++a+A + g  f+     e++ ++a e++ +  ++ ee +++s++  f+++l a   + d+ + + +++++  + +++  + 
       KOO22631.1 855 IHGPPGCGKTMIAKAVAAETGAYFFLIngpEVMSKMAGESEQKLRQAfEECEKNSPAILFIDELDAIAPRRDKAQGEVEKRIVSQMLTLMDGIS 948
                      66678****************8887551146666666666555555546666688888999888888777777777777777766666666666 PP

  Cytidylate_kin2  94 .aeesvVi 100
                       ++ +vV+
       KOO22631.1 949 pKS-QVVV 955
                      333.5555 PP

  == domain 2  score: 7.0 bits;  conditional E-value: 0.018
  Cytidylate_kin2    8 yGsgGetigeaLAekLglpfydreiieevakelglseeev.eevdersrls 57  
                        G+g++ +++a+A++ + +f++ + +e + k +g se+ v e +d+++ +s
       KOO22631.1 1132 PGCGKTLLAKAIANECQANFISVKGPELLTKWFGESEANVrELFDKARQAS 1182
                       59**************************************88888844433 PP

>> Parvo_NS1  Parvovirus non-structural protein NS1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.6   0.0     0.021       7.2     117     140 ..     853     876 ..     844     883 .. 0.87
   2 !   11.3   0.1    0.0004      0.13     117     138 ..    1126    1147 ..    1119    1152 .. 0.91

  Alignments for each domain:
  == domain 1  score: 5.6 bits;  conditional E-value: 0.021
   Parvo_NS1 117 vwfyGpantGktnlaeaIakavpl 140
                 v+++Gp+ +Gkt++a+a a  +  
  KOO22631.1 853 VLIHGPPGCGKTMIAKAVAAETGA 876
                 7899*************9987655 PP

  == domain 2  score: 11.3 bits;  conditional E-value: 0.0004
   Parvo_NS1  117 vwfyGpantGktnlaeaIakav 138 
                  v+fyGp+ +Gkt la+aIa+ +
  KOO22631.1 1126 VLFYGPPGCGKTLLAKAIANEC 1147
                  89*****************966 PP

>> AAA_7  P-loop containing dynein motor region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6   0.0     0.014       4.8      33      57 ..     850     874 ..     839     929 .. 0.84
   2 !   10.3   0.0    0.0011      0.37      30      62 ..    1120    1151 ..    1112    1156 .. 0.85

  Alignments for each domain:
  == domain 1  score: 6.6 bits;  conditional E-value: 0.014
       AAA_7  33 kkpvllvGptGtGKtviikdllkkl 57 
                  + vl+ Gp G+GKt+i+k +  + 
  KOO22631.1 850 PRGVLIHGPPGCGKTMIAKAVAAET 874
                 5679**************9977655 PP

  == domain 2  score: 10.3 bits;  conditional E-value: 0.0011
       AAA_7   30 lknkkpvllvGptGtGKtviikdllkkldkeky 62  
                  +++ k vl++Gp G+GKt+++k + ++++  ++
  KOO22631.1 1120 MNAAKGVLFYGPPGCGKTLLAKAIANECQ-ANF 1151
                  567899*****************999988.444 PP

>> TsaE  Threonylcarbamoyl adenosine biosynthesis protein TsaE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.2   0.0     0.061        21      22      45 ..     853     876 ..     825     885 .. 0.80
   2 !   10.5   0.0    0.0013      0.45      19      51 ..    1123    1157 ..    1098    1161 .. 0.76

  Alignments for each domain:
  == domain 1  score: 5.2 bits;  conditional E-value: 0.061
                 EEEEESTTSSHHHHHHHHHHHTT- CS
        TsaE  22 ilLeGdLGaGKTtlvrglakalgv 45 
                 +l++G+ G+GKT++++++a++ g 
  KOO22631.1 853 VLIHGPPGCGKTMIAKAVAAETGA 876
                 999***************998875 PP

  == domain 2  score: 10.5 bits;  conditional E-value: 0.0013
                  TEEEEEEESTTSSHHHHHHHHHHHTT--..----T CS
        TsaE   19 gdvilLeGdLGaGKTtlvrglakalgve..evkSP 51  
                  ++ +l++G+ G+GKT l++++a++++ +  +vk P
  KOO22631.1 1123 AKGVLFYGPPGCGKTLLAKAIANECQANfiSVKGP 1157
                  3459********************99887777766 PP

>> Sigma54_activat  Sigma-54 interaction domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.7   0.0    0.0079       2.7      23      45 ..     851     873 ..     838     964 .. 0.90
   2 ?    7.1   0.0     0.012         4      23      52 ..    1124    1150 ..    1103    1169 .. 0.83

  Alignments for each domain:
  == domain 1  score: 7.7 bits;  conditional E-value: 0.0079
                      S-EEEECSTTSSHHHHHHHHHHH CS
  Sigma54_activat  23 lsvlitGesGtGKellaraihea 45 
                        vli+G  G+GK+++a+a+ ++
       KOO22631.1 851 RGVLIHGPPGCGKTMIAKAVAAE 873
                      569***************98764 PP

  == domain 2  score: 7.1 bits;  conditional E-value: 0.012
                       S-EEEECSTTSSHHHHHHHHHHHSTTTTS- CS
  Sigma54_activat   23 lsvlitGesGtGKellaraiheaskrkekp 52  
                         vl  G  G+GK+lla+ai ++ +   ++
       KOO22631.1 1124 KGVLFYGPPGCGKTLLAKAIANECQ---AN 1150
                       569*****************98776...34 PP

>> ATPase  KaiC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6   0.0     0.013       4.3      15      38 ..     846     869 ..     827     953 .. 0.85
   2 ?    6.1   0.0     0.018       6.2      15      37 ..    1119    1141 ..    1105    1152 .. 0.83
   3 ?   -1.8   0.1       4.8   1.6e+03      53      91 ..    1743    1780 ..    1711    1819 .. 0.65

  Alignments for each domain:
  == domain 1  score: 6.6 bits;  conditional E-value: 0.013
      ATPase  15 GipegrvvlitGepGtGKtifalq 38 
                 G+   r vli G pG+GKt++a+ 
  KOO22631.1 846 GVRPPRGVLIHGPPGCGKTMIAKA 869
                 56666789************9986 PP

  == domain 2  score: 6.1 bits;  conditional E-value: 0.018
      ATPase   15 GipegrvvlitGepGtGKtifal 37  
                  G+  ++ vl +G pG+GKt++a+
  KOO22631.1 1119 GMNAAKGVLFYGPPGCGKTLLAK 1141
                  88888999*************97 PP

  == domain 3  score: -1.8 bits;  conditional E-value: 4.8
      ATPase   53 fvtveepaedlrenakslGwdlekleeegklaiidases 91  
                  +v +eep ++l  +++++   l k  +e +  +  a ++
  KOO22631.1 1743 LVRLEEPRKQLAAQMEEVARALAKASNE-LAEMRAALRH 1780
                  5778888888888888888888888877.2223333333 PP

>> Zeta_toxin  Zeta toxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.5   0.0    0.0066       2.2      16      40 ..     850     874 ..     840     882 .. 0.87
   2 ?    6.9   0.0      0.01       3.5      19      50 ..    1126    1155 ..    1121    1161 .. 0.86

  Alignments for each domain:
  == domain 1  score: 7.5 bits;  conditional E-value: 0.0066
  Zeta_toxin  16 PklillgGqpGAGKselaellkdel 40 
                 P  +l+ G pG+GK+ +a+++++e+
  KOO22631.1 850 PRGVLIHGPPGCGKTMIAKAVAAET 874
                 78899****************9997 PP

  == domain 2  score: 6.9 bits;  conditional E-value: 0.01
  Zeta_toxin   19 illgGqpGAGKselaellkdelerqgnvvrld 50  
                  +l  G pG+GK+ la+++++e   q n++ ++
  KOO22631.1 1126 VLFYGPPGCGKTLLAKAIANEC--QANFISVK 1155
                  566699***************9..89998886 PP

>> AAA_24  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.1   0.0     0.006         2       5      76 ..     853     920 ..     850     928 .. 0.72
   2 ?    6.4   0.0      0.02       6.7       4      22 ..    1125    1143 ..    1122    1155 .. 0.84

  Alignments for each domain:
  == domain 1  score: 8.1 bits;  conditional E-value: 0.006
      AAA_24   5 iliyGpsgiGKTtlakel.gpkplfidtekGlksldadkfpdieswedfldevvelaaeladyktlviDtide 76 
                 +li Gp+g GKT++ak    ++ +++ + +G   +    ++   s ++++++++e +++ +   +l+iD +d 
  KOO22631.1 853 VLIHGPPGCGKTMIAKAVaAETGAYFFLINGPEVMSKMAGE---SEQKLRQAFEECEKNSP--AILFIDELDA 920
                 79**************9984444444444555566666655...67788888877766666..6778887776 PP

  == domain 2  score: 6.4 bits;  conditional E-value: 0.02
      AAA_24    4 kiliyGpsgiGKTtlakel 22  
                   +l yGp+g GKT lak +
  KOO22631.1 1125 GVLFYGPPGCGKTLLAKAI 1143
                  5789************987 PP

>> ATPase_2  ATPase domain predominantly from Archaea
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.9   0.0      0.03        10      23      63 ..     853     889 ..     844     955 .. 0.75
   2 !    9.2   0.0     0.003         1      23      44 ..    1126    1147 ..    1116    1155 .. 0.83

  Alignments for each domain:
  == domain 1  score: 5.9 bits;  conditional E-value: 0.03
    ATPase_2  23 yfiYGpegsGKtaLlkeiienledkdkyviyyialreesis 63 
                 ++i Gp g+GKt + k ++ +        +++i+  e+ ++
  KOO22631.1 853 VLIHGPPGCGKTMIAKAVAAETGA----YFFLINGPEVMSK 889
                 78***********99999887733....4555555555444 PP

  == domain 2  score: 9.2 bits;  conditional E-value: 0.003
    ATPase_2   23 yfiYGpegsGKtaLlkeiienl 44  
                  ++ YGp g+GKt L k i+++ 
  KOO22631.1 1126 VLFYGPPGCGKTLLAKAIANEC 1147
                  678*************999986 PP

>> AAA_3  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.5   0.0      0.01       3.5       2      30 ..     853     881 ..     852     966 .. 0.72
   2 ?    6.5   0.0     0.021         7       2      30 ..    1126    1154 ..    1125    1163 .. 0.88

  Alignments for each domain:
  == domain 1  score: 7.5 bits;  conditional E-value: 0.01
       AAA_3   2 vllegvPGlaktllvkalakaldlefkri 30 
                 vl++g PG +kt+++ka+a   ++ f  i
  KOO22631.1 853 VLIHGPPGCGKTMIAKAVAAETGAYFFLI 881
                 89*****************9999888665 PP

  == domain 2  score: 6.5 bits;  conditional E-value: 0.021
       AAA_3    2 vllegvPGlaktllvkalakaldlefkri 30  
                  vl+ g PG +ktll+ka+a+  +++f  +
  KOO22631.1 1126 VLFYGPPGCGKTLLAKAIANECQANFISV 1154
                  788999****************9999766 PP

>> DUF815  Protein of unknown function (DUF815)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.1   0.0      0.26        89      52      81 ..     849     878 ..     812     965 .. 0.77
   2 !   11.0   0.0    0.0005      0.17      22      81 ..    1083    1151 ..    1066    1191 .. 0.76

  Alignments for each domain:
  == domain 1  score: 2.1 bits;  conditional E-value: 0.26
      DUF815  52 pannvLLwGarGtGKSslvkallneyaeeg 81 
                 p + vL+ G  G+GK  + ka+ +e+ +  
  KOO22631.1 849 PPRGVLIHGPPGCGKTMIAKAVAAETGAYF 878
                 55679*****************99876554 PP

  == domain 2  score: 11.0 bits;  conditional E-value: 0.0005
      DUF815   22 vdevklddLvgidkqkealvente...qfle......glpannvLLwGarGtGKSslvkallneyaeeg 81  
                  + +vk++d+ g+++ k++l+e ++   q+++       ++a+ vL++G  G+GK  l ka+ ne++++ 
  KOO22631.1 1083 MPNVKWEDIGGLEDVKRELKETVQypvQYADkfelfgMNAAKGVLFYGPPGCGKTLLAKAIANECQANF 1151
                  5578888888999988888887753333333221221467999*********************99876 PP

>> PhoH  PhoH-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.2   0.0     0.019       6.3      22      42 ..     853     873 ..     848     887 .. 0.91
   2 ?    6.8   0.0     0.013       4.2      19      42 ..    1123    1146 ..    1110    1153 .. 0.82

  Alignments for each domain:
  == domain 1  score: 6.2 bits;  conditional E-value: 0.019
                 EEEE--TTSSTTHHHHHHHHH CS
        PhoH  22 vfaiGpaGtGKtylavalave 42 
                 v + Gp G+GKt++a a+a+e
  KOO22631.1 853 VLIHGPPGCGKTMIAKAVAAE 873
                 6789*************9987 PP

  == domain 2  score: 6.8 bits;  conditional E-value: 0.013
                  -SEEEEE--TTSSTTHHHHHHHHH CS
        PhoH   19 ndivfaiGpaGtGKtylavalave 42  
                   + v   Gp G+GKt+la a+a e
  KOO22631.1 1123 AKGVLFYGPPGCGKTLLAKAIANE 1146
                  5567889***********999865 PP

>> Sigma54_activ_2  Sigma-54 interaction domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.3   0.0     0.007       2.4      24      83 ..     853     923 ..     847     943 .. 0.68
   2 ?    4.7   0.0     0.088        30      23      47 ..    1125    1149 ..    1120    1200 .. 0.62

  Alignments for each domain:
  == domain 1  score: 8.3 bits;  conditional E-value: 0.007
                      EEEEEETT--HHHHHHCC--TTS-EE....--SSTTHHHH-H.......HHHHHHTTTSEEEEEE-TT--H CS
  Sigma54_activ_2  24 vfltGekGsgkelvArlLhknsgpwl....eifvverlaklp.......ldlleqakggtLylkdiadlsk 83 
                      v++ G++G+gk+++A++ + + g        + v+ + a +         +  e+ ++++L++ +++ + +
       KOO22631.1 853 VLIHGPPGCGKTMIAKAVAAETGAYFflinGPEVMSKMAGESeqklrqaFEECEKNSPAILFIDELDAIAP 923
                      9*****************99998864111133444444433333443334444556899999998887654 PP

  == domain 2  score: 4.7 bits;  conditional E-value: 0.088
                       -EEEEEETT--HHHHHHCC--TTS- CS
  Sigma54_activ_2   23 pvfltGekGsgkelvArlLhknsgp 47  
                        v+  G++G+gk+l A++++++ + 
       KOO22631.1 1125 GVLFYGPPGCGKTLLAKAIANECQA 1149
                       58999**************986544 PP

>> DUF2075  Uncharacterized conserved protein (DUF2075)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.1   0.0    0.0079       2.7       4      45 ..     853     887 ..     850     933 .. 0.71
   2 ?    4.9   0.0     0.039        13       5      38 ..    1127    1153 ..    1124    1179 .. 0.81

  Alignments for each domain:
  == domain 1  score: 7.1 bits;  conditional E-value: 0.0079
     DUF2075   4 vlVtGvaGtGKtvvllnllaeleddeeertavylsvNhplvl 45 
                 vl++G +G GKt+++ +++ae         a +++ N+p+v+
  KOO22631.1 853 VLIHGPPGCGKTMIAKAVAAET-------GAYFFLINGPEVM 887
                 79***************99998.......4444444554443 PP

  == domain 2  score: 4.9 bits;  conditional E-value: 0.039
     DUF2075    5 lVtGvaGtGKtvvllnllaeleddeeertavyls 38  
                  l  G +G GKt+++ ++++e+       +a+++s
  KOO22631.1 1127 LFYGPPGCGKTLLAKAIANEC-------QANFIS 1153
                  5679****************9.......444444 PP

>> SKI  Shikimate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.3   0.0     0.059        20       1      21 [.     859     879 ..     859     906 .. 0.87
   2 ?    5.2   0.0     0.061        21       1      22 [.    1132    1153 ..    1132    1178 .. 0.86

  Alignments for each domain:
  == domain 1  score: 5.3 bits;  conditional E-value: 0.059
                 TTSSHHHHHHHHHHHHTSEEE CS
         SKI   1 mGaGKstvGkllAkklglefi 21 
                 +G+GK+ ++k++A + g  f+
  KOO22631.1 859 PGCGKTMIAKAVAAETGAYFF 879
                 6**************999986 PP

  == domain 2  score: 5.2 bits;  conditional E-value: 0.061
                  TTSSHHHHHHHHHHHHTSEEEE CS
         SKI    1 mGaGKstvGkllAkklglefiD 22  
                  +G+GK+ ++k++A++ + +fi 
  KOO22631.1 1132 PGCGKTLLAKAIANECQANFIS 1153
                  6*****************9985 PP

>> TniB  Bacterial TniB protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.3   0.0     0.017       5.9      36      57 ..     851     872 ..     838     882 .. 0.85
   2 ?    0.1   0.0       1.3   4.4e+02     103     141 ..     893     931 ..     877     938 .. 0.76
   3 ?    0.2   0.0       1.2   4.2e+02      36      59 ..    1124    1147 ..    1117    1155 .. 0.84

  Alignments for each domain:
  == domain 1  score: 6.3 bits;  conditional E-value: 0.017
        TniB  36 pnlllvGdsnnGKtmivekFar 57 
                 + +l++G++ +GKtmi++  a+
  KOO22631.1 851 RGVLIHGPPGCGKTMIAKAVAA 872
                 689*************997665 PP

  == domain 2  score: 0.1 bits;  conditional E-value: 1.3
        TniB 103 rvskleqqvlrllrelkvrvLiiDEihnllagsarkqre 141
                 + +++ +q+ + +++ ++ +L iDE++ +   + ++q e
  KOO22631.1 893 ESEQKLRQAFEECEKNSPAILFIDELDAIAPRRDKAQGE 931
                 4556666777888888999********998776666655 PP

  == domain 3  score: 0.2 bits;  conditional E-value: 1.2
        TniB   36 pnlllvGdsnnGKtmivekFarlh 59  
                  + +l++G++ +GKt +++  a++ 
  KOO22631.1 1124 KGVLFYGPPGCGKTLLAKAIANEC 1147
                  6799***********999877765 PP

>> NTPase_1  NTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.1   0.0      0.23        77       2      21 ..     853     872 ..     852     883 .. 0.88
   2 ?    5.9   0.0     0.031        11       6      32 ..    1130    1156 ..    1126    1161 .. 0.91

  Alignments for each domain:
  == domain 1  score: 3.1 bits;  conditional E-value: 0.23
                 EEEE--TTSSHHHHHHHHHH CS
    NTPase_1   2 vfiTGppGvGKtTlvkkvle 21 
                 v+i GppG GKt + k v+ 
  KOO22631.1 853 VLIHGPPGCGKTMIAKAVAA 872
                 7899********99998876 PP

  == domain 2  score: 5.9 bits;  conditional E-value: 0.031
                  --TTSSHHHHHHHHHHHH...GGGEEE CS
    NTPase_1    6 GppGvGKtTlvkkvlellkssgvkvgG 32  
                  GppG GKt l k ++++++ + ++v+G
  KOO22631.1 1130 GPPGCGKTLLAKAIANECQANFISVKG 1156
                  9*****************999999988 PP

>> AAA_19  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.2   0.0     0.037        12      11      33 ..     851     873 ..     845     923 .. 0.87
   2 ?    3.7   0.0      0.22        74      11      35 ..    1124    1148 ..    1119    1161 .. 0.83

  Alignments for each domain:
  == domain 1  score: 6.2 bits;  conditional E-value: 0.037
      AAA_19  11 kvllvtaGpGtGKTrvlkhival 33 
                 + +l+ ++pG+GKT + k++ a+
  KOO22631.1 851 RGVLIHGPPGCGKTMIAKAVAAE 873
                 56899**********99988776 PP

  == domain 2  score: 3.7 bits;  conditional E-value: 0.22
      AAA_19   11 kvllvtaGpGtGKTrvlkhivallv 35  
                  k +l  ++pG+GKT + k+i ++++
  KOO22631.1 1124 KGVLFYGPPGCGKTLLAKAIANECQ 1148
                  567889********99999887766 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.0   0.1     0.023       7.8      36      56 ..     853     873 ..     838     887 .. 0.88
   2 ?    1.1   0.0      0.73   2.5e+02     128     174 ..     896     942 ..     879     947 .. 0.78
   3 ?    5.4   0.0     0.035        12      36      54 ..    1126    1144 ..    1119    1150 .. 0.83
   4 ?    1.3   1.0      0.67   2.3e+02      83     139 ..    1711    1766 ..    1673    1774 .. 0.82

  Alignments for each domain:
  == domain 1  score: 6.0 bits;  conditional E-value: 0.023
      AAA_25  36 allaGapgtGKttlaldlala 56 
                 +l+ G+pg+GKt++a  +a++
  KOO22631.1 853 VLIHGPPGCGKTMIAKAVAAE 873
                 5789**********9888875 PP

  == domain 2  score: 1.1 bits;  conditional E-value: 0.73
      AAA_25 128 advdaleaaieevegvrlvviDplsralggdensnsdv.galvealer 174
                 +++++  +++e+ + ++ + iD l+++ +   +++ +v +++v+++  
  KOO22631.1 896 QKLRQAFEECEK-NSPAILFIDELDAIAPRRDKAQGEVeKRIVSQMLT 942
                 455566667777.66***************999999988999998765 PP

  == domain 3  score: 5.4 bits;  conditional E-value: 0.035
      AAA_25   36 allaGapgtGKttlaldla 54  
                  +l++G+pg+GKt la  +a
  KOO22631.1 1126 VLFYGPPGCGKTLLAKAIA 1144
                  789***********97665 PP

  == domain 4  score: 1.3 bits;  conditional E-value: 0.67
      AAA_25   83 edelrrRlravgealrddarllvldlagveslpLfakdrggtlltadvdaleaaiee 139 
                  ++e+++Rl+++  +l    r   ++ +g+ + +L+ ++   ++l+a+++++++a+ +
  KOO22631.1 1711 AAEVNERLEEMEMQLGSLTRQMTHSMPGM-NERLVRLEEPRKQLAAQMEEVARALAK 1766
                  45999**********99999999999997.889999999999999999999999876 PP

>> DUF1664  Protein of unknown function (DUF1664)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.4   0.4      0.11        37      49     117 ..    1525    1586 ..    1505    1593 .. 0.56
   2 ?    2.1   0.1      0.55   1.9e+02      58     109 ..    1681    1731 ..    1671    1749 .. 0.65
   3 ?    7.8   0.7    0.0097       3.3      46     119 ..    1728    1808 ..    1718    1816 .. 0.59

  Alignments for each domain:
  == domain 1  score: 4.4 bits;  conditional E-value: 0.11
     DUF1664   49 qleqvseslaatkrhLssridrvdkkldeqkeiskeikeevtevredlseigedvesvkeavegleskl 117 
                  q++ + ++l+++++ L ++i   d+++       k++++e +e+++  ++ g  v++ k+ + ++++kl
  KOO22631.1 1525 QIDALAAALKRQQDLLDEHIRGTDTQM-------KATQAETSELHRAFRAQGAAVQATKAYIGSVDEKL 1586
                  455555555555555555555555555.......55555555555555555555555555555555554 PP

  == domain 2  score: 2.1 bits;  conditional E-value: 0.55
     DUF1664   58 aatkrhLssridrvdkkldeqkeiskeikeevtevredlseigedvesvkea 109 
                  a++ r+L++r  +  ++l eq+ + +  k++ +ev+e l+e++ ++ s+ + 
  KOO22631.1 1681 ASV-RELEQRWPEWVAELREQQTTLSVRKANAAEVNERLEEMEMQLGSLTRQ 1731
                  333.578888888888888888888888888888888888888877766543 PP

  == domain 3  score: 7.8 bits;  conditional E-value: 0.0097
     DUF1664   46 vskqleqvs.......eslaatkrhLssridrvdkkldeqkeiskeikeevtevredlseigedvesvkeavegleskler 119 
                  +++q+++ +         l++ +++L++++++v + l + ++  +e+++ + + + +l +++ + ++  +a  +le++l++
  KOO22631.1 1728 LTRQMTHSMpgmnerlVRLEEPRKQLAAQMEEVARALAKASNELAEMRAALRHSKAQLGTLSAERQTHATALASLETRLRQ 1808
                  444555444111111134556666666666666666666666666666666666666666666666666666666666665 PP

>> SesA  N-terminal domain on NACHT_NTPase and P-loop NTPases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   1.7    0.0018      0.62      22     115 ..    1758    1853 ..    1750    1857 .. 0.72

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.0018
        SesA   22 kglpeaFrevgkrLplvqetLedaksqlesskldedtesaikpvlesckekatkleeifekv...apapadsrleryrkavrs..lgkgskVEtLmk 113 
                  ++  +a+ +++++L   +++L++ k ql + +++ +t +   ++l+s +++++++ +i e+      + +d+  e++ ++ ++  +gk++kVE L  
  KOO22631.1 1758 EEVARALAKASNELAEMRAALRHSKAQLGTLSAERQTHA---TALASLETRLRQVGSITEEQaryLVTLSDALQEKVLSTKQQalMGKDGKVEGLAV 1851
                  566778889999999999999999999999999998877...555555555555555555553436666666666665554446699********99 PP

        SesA  114 gi 115 
                  gi
  KOO22631.1 1852 GI 1853
                  98 PP

>> HTH_ParB  HTH domain found in ParB protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.1       5.1   1.7e+03      31      49 ..    1671    1689 ..    1669    1690 .. 0.74
   2 ?   12.0   0.2   0.00041      0.14      10      33 ..    1810    1832 ..    1795    1837 .. 0.92

  Alignments for each domain:
  == domain 1  score: -1.1 bits;  conditional E-value: 5.1
    HTH_ParB   31 qlaekiieegLsVRetEkl 49  
                  ++ae + +   sVRe+E++
  KOO22631.1 1671 EMAEAVGKALASVRELEQR 1689
                  6666666777799**9985 PP

  == domain 2  score: 12.0 bits;  conditional E-value: 0.00041
    HTH_ParB   10 gkiseGHARaLlslkdeelqlqla 33  
                  g i+e +AR+L+ l+d  lq++++
  KOO22631.1 1810 GSITEEQARYLVTLSD-ALQEKVL 1832
                  89**************.9***997 PP

>> Baculo_PEP_C  Baculovirus polyhedron envelope protein, PEP, C terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.0         4   1.3e+03      34      75 ..    1423    1464 ..    1420    1490 .. 0.73
   2 ?   -0.0   1.9       2.5   8.3e+02      22      56 ..    1519    1553 ..    1470    1594 .. 0.54
   3 ?    9.4   3.2    0.0029      0.99       7     116 ..    1704    1807 ..    1692    1829 .. 0.74

  Alignments for each domain:
  == domain 1  score: -0.7 bits;  conditional E-value: 4
  Baculo_PEP_C   34 aqlatlldaietqLnalsedlksllaeldtrldtlltnLtda 75  
                    a++ ++l++ e++L ++  dl++ +  +d+++++++ ++++ 
    KOO22631.1 1423 AAVHRQLKENEKKLISFGGDLEQIMFTIDEKVSQASRRVEQD 1464
                    677778888888888888888888888888877777766654 PP

  == domain 2  score: -0.0 bits;  conditional E-value: 2.5
  Baculo_PEP_C   22 LnairlqnvqilaqlatlldaietqLnalsedlks 56  
                    L+a + q   ++a+l+++ d +++ +   ++++k+
    KOO22631.1 1519 LTAQQGQIDALAAALKRQQDLLDEHIRGTDTQMKA 1553
                    22222222223333333333333333333333333 PP

  == domain 3  score: 9.4 bits;  conditional E-value: 0.0029
  Baculo_PEP_C    7 LnggggnqfldLtnvLnairlqnvqilaqlatlldaietqLnalsedlksllaeldtrldtlltnLtdalnalqdtlrneLtnlnsiltnLlssv 101 
                    L++ ++n   ++++ L+ + +q+ +++ q+++ +  ++++L  l+e  k+l a    ++++++ +L +a n+l+ ++r +L   +++l +L ++ 
    KOO22631.1 1704 LSVRKANA-AEVNERLEEMEMQLGSLTRQMTHSMPGMNERLVRLEEPRKQLAA----QMEEVARALAKASNELA-EMRAALRHSKAQLGTLSAER 1792
                    45666664.78888888888888888888888888888888888776666554....88888888888888888.68888888888888888877 PP

  Baculo_PEP_C  102 tNinstLnnllqaln 116 
                        ++L++l + l 
    KOO22631.1 1793 QTHATALASLETRLR 1807
                    777777777766555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (2487 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1493  (0.0832729); expected 358.6 (0.02)
Passed bias filter:                      656  (0.0365888); expected 358.6 (0.02)
Passed Vit filter:                       141  (0.00786435); expected 17.9 (0.001)
Passed Fwd filter:                        77  (0.00429472); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              53  [number of targets reported over threshold]
# CPU time: 1.86u 0.32s 00:00:02.18 Elapsed: 00:00:00.59
# Mc/sec: 12650.63
//
Query:       KOO22632.1  [L=329]
Description: hemolysin-type calcium-binding region [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
  ------ inclusion threshold ------
      0.041   14.3   0.1       0.13   12.7   0.1    1.8  1  Neuroparsin  Neuroparsin


Domain annotation for each model (and alignments):
>> Neuroparsin  Neuroparsin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.1   7.3e-06      0.13      33      75 ..     121     163 ..     113     176 .. 0.87

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 7.3e-06
  Neuroparsin  33 gancvvdltrceygevtdffgrkvcakgpgekcndyakcgvgl 75 
                  g    ++l rc   ++ d+ gr+v    p  +c +++ c   l
   KOO22632.1 121 GGSSGIELQRCARAQLRDIVGRNVRGPYPRGQCVQFTACDHAL 163
                  5566789********************************9876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (329 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       291  (0.0162307); expected 358.6 (0.02)
Passed bias filter:                      246  (0.0137208); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.25s 00:00:00.68 Elapsed: 00:00:00.41
# Mc/sec: 2415.95
//
Query:       KOO22633.1  [L=283]
Description: ubiquitin carboxyl-terminal hydrolase 22 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    9.9e-29  100.6   0.0    1.3e-28  100.2   0.0    1.2  1  UCH          Ubiquitin carboxyl-terminal hydrolase
    4.5e-13   49.5   0.0    5.4e-13   49.2   0.0    1.1  1  UCH_1        Ubiquitin carboxyl-terminal hydrolase
  ------ inclusion threshold ------
       0.11   12.6   1.1        1.9    8.7   0.6    2.5  2  Zn-ribbon_8  Zinc ribbon domain


Domain annotation for each model (and alignments):
>> UCH  Ubiquitin carboxyl-terminal hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  100.2   0.0   2.2e-32   1.3e-28      89     257 .]       5     277 ..       1     277 [. 0.81

  Alignments for each domain:
  == domain 1  score: 100.2 bits;  conditional E-value: 2.2e-32
                 SGGGTSSSTCEHHHHHHHHHHHHHHHHCC...........HCCCHHHHHHCCCTTSH..HHHHH-EEEEE............................. CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxx...........xxxxxxxxxxxxxxxxx..xxxxxxxxxxx............................. RF
         UCH  89 aksfsgykqqDaqEflaflLdqlhedlnr...........evaeekwkkhlkrndsl..itdlfegqlks............................. 145
                 a+ f+gy+qqDa+Efl + L+++   l             +  +++  ++ +r+      + +f g l+s                             
  KOO22633.1   5 AEYFAGYEQQDAHEFLIAALASIYAGLALpenptrpptpaDLVKMRGPSSAQRPLGAvdLQGIFTGVLRSdvaclkchgkstkyeefqdisldlsrlaa 103
                 5669***********************997777777776633333333333332222003445666666689999999999999999999999999999 PP

                 .............................................EEEEEEB-SEEEEEEESEEETEE....EEE--SEEB--S.EEE-G....GGBSS CS
                 .............................................xxxxxxxxxxxxxxxxxxxxxxx....xxxxxxxxxxxx.xxxxx....xxxxx RF
         UCH 146 .............................................klklkrlPeiLiihlkRfsynss....ksKlntkvefpe.eldls....sylae 190
                                                              +l+++rlP++L++hlkRf+ + +    +sK+++ vefp+ +l++     sy+++
  KOO22633.1 104 eegggatgyhttlagclrsftraerlssaercwcpscgalqdstkQLSVHRLPNVLCFHLKRFKHSANkqqpPSKIESFVEFPLhSLNMRphtsSYICS 202
                 99***************************************************************7777899***********8789988444433332 PP

                 -BTTS-TCS-B..............EEEEEEEEEESCTTSEEEEEEEECTTTTEEEEEETTEEEEE-HHCCCTT.CEEEEEE CS
                 xxxxxxxxxxx..............xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxx RF
         UCH 191 ekkkkteekkk..............YeLiavvvHsGslssGHYvayiknekngkWykydDetvkevkeeeevls.sayiLfY 257
                 +++ ++                   Y+L++vvvH+G+++ GHY+ y++   +  W++++D tv++ + e ev+s  +y Lf+
  KOO22633.1 203 HSTHSN----GqqqapaleplpehlYDLFGVVVHHGTMQTGHYTNYVR--CQADWFHCSDATVTPASVE-EVRSaMGYQLFF 277
                 222222....1234577889999*************************..6788*************98.899999999996 PP

>> UCH_1  Ubiquitin carboxyl-terminal hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.2   0.0   9.1e-17   5.4e-13     131     299 ..      64     248 ..      23     260 .. 0.76

  Alignments for each domain:
  == domain 1  score: 49.2 bits;  conditional E-value: 9.1e-17
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxx....xxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       UCH_1 131 ieqllgtkaettirclkCgseksrksstlvldlkyPk..psne....kkeakvtfasilkssler...ekttrawCekCkryqpteqrktvknlPpvLa 220
                 ++ +++  + + + clkC+ ++++ + +  ++l   +     e    ++  ++t+a +l+s+       + +r wC++C   q  +++ +v++lP+vL+
  KOO22633.1  64 LQGIFTGVLRSDVACLKCHGKSTKYEEFQDISLDLSRlaA--EegggATGYHTTLAGCLRSFTRAerlSSAERCWCPSCGALQDSTKQLSVHRLPNVLC 160
                 66788999999*****************999886542221..13555666667889999998888555567799************************* PP

                 xxxxxxxx....xxxxxxxx.......xxxxx.xxxxxxxxxxxxx...........xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       UCH_1 221 lnakleee....eelelwkt.......knwlp.leiklsldedknl...........eeklkeerekakaekeikvYeLqsvvvhigdskesghLvslv 296
                 +++k+++     +      +          +p +++++       +           ++++ +++++a ++     Y+L++vvvh g + + gh+  +v
  KOO22633.1 161 FHLKRFKHsankQ------QppskiesFVEFPlHSLNM-------RphtssyicshsTHSNGQQQAPALEPLPEHLYDLFGVVVHHG-TMQTGHYTNYV 245
                 ****995524320......1222333212222344444.......1333345577777778888888999999**************.656*******9 PP

                 xxx RF
       UCH_1 297 kva 299
                 + +
  KOO22633.1 246 RCQ 248
                 974 PP

>> Zn-ribbon_8  Zinc ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.6   0.0     0.051   3.1e+02      27      38 ..      76      87 ..      67      99 .. 0.72
   2 ?    8.7   0.6   0.00032       1.9      11      35 ..     119     145 ..     117     150 .. 0.67

  Alignments for each domain:
  == domain 1  score: 1.6 bits;  conditional E-value: 0.051
  Zn-ribbon_8 27 taCPeCgsevrr 38
                 +aC +C+++ ++
   KOO22633.1 76 VACLKCHGKSTK 87
                 557777775544 PP

  == domain 2  score: 8.7 bits;  conditional E-value: 0.00032
  Zn-ribbon_8  11 Cghefevlqsisdaplta.CPeCgs..e 35 
                  C + f++  + s  ++ + CP+Cg+  +
   KOO22633.1 119 CLRSFTRAERLSS-AERCwCPSCGAlqD 145
                  6667776666664.46677*****9644 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (283 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       468  (0.026103); expected 358.6 (0.02)
Passed bias filter:                      333  (0.0185733); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.42u 0.24s 00:00:00.65 Elapsed: 00:00:00.39
# Mc/sec: 2187.27
//
Query:       KOO22634.1  [L=266]
Description: hypothetical protein Ctob_001103 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
        4.2    8.1  10.4          5    7.8   1.1    3.2  3  SlyX      SlyX


Domain annotation for each model (and alignments):
>> SlyX  SlyX
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.1      0.32   5.7e+03      28      44 ..      27      43 ..      19      58 .. 0.55
   2 ?    5.5   0.2    0.0014        26      13      32 ..     101     120 ..      99     137 .. 0.81
   3 ?    7.8   1.1   0.00028         5      29      55 ..     139     165 ..     134     172 .. 0.88

  Alignments for each domain:
  == domain 1  score: -2.0 bits;  conditional E-value: 0.32
                HHHHHHHHHHHHHHHHH CS
        SlyX 28 eqqqqidrlqrqlrlla 44
                +q+q+ ++  +++++ +
  KOO22634.1 27 AQEQRAEQRAARIAAQT 43
                34444444444444444 PP

  == domain 2  score: 5.5 bits;  conditional E-value: 0.0014
                 HHHHHHHHHHHHHHHHHHHH CS
        SlyX  13 afqedtieeLndvvaeqqqq 32 
                 a qe+++e+L++ v++ ++ 
  KOO22634.1 101 AKQERLVEQLDKRVTKMEHV 120
                 7899******9999988765 PP

  == domain 3  score: 7.8 bits;  conditional E-value: 0.00028
                 HHHHHHHHHHHHHHHHHT-XXXXXXXX CS
        SlyX  29 qqqqidrlqrqlrllaerlkeleessg 55 
                 q  qi+r  r l++l e++++++e+ +
  KOO22634.1 139 QSAQIERNARALAQLSEQVESIKEQLS 165
                 8899***************99999865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (266 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2006  (0.111886); expected 358.6 (0.02)
Passed bias filter:                      673  (0.037537); expected 358.6 (0.02)
Passed Vit filter:                        63  (0.00351386); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.50u 0.27s 00:00:00.77 Elapsed: 00:00:00.42
# Mc/sec: 1899.39
//
Query:       KOO22635.1  [L=365]
Description: hypothetical protein Ctob_001099 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (365 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       356  (0.0198561); expected 358.6 (0.02)
Passed bias filter:                      272  (0.015171); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.43u 0.27s 00:00:00.70 Elapsed: 00:00:00.41
# Mc/sec: 2663.82
//
Query:       KOO22636.1  [L=434]
Description: hypothetical protein Ctob_003391 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.8e-07   30.2   0.0    4.4e-05   23.1   0.0    2.3  2  ubiquitin  Ubiquitin family
  ------ inclusion threshold ------
      0.091   12.6   0.0        3.4    7.6   0.0    2.3  2  Rad60-SLD  Ubiquitin-2 like Rad60 SUMO-like
       0.79    9.9  11.3        1.6    8.9  11.3    1.6  1  zf-AN1     AN1-like Zinc finger


Domain annotation for each model (and alignments):
>> ubiquitin  Ubiquitin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.1   0.0   7.4e-09   4.4e-05      19      59 ..      19      59 ..       7      62 .. 0.93
   2 !    4.5   0.0    0.0049        29      44      66 ..     117     140 ..      79     142 .. 0.78

  Alignments for each domain:
  == domain 1  score: 23.1 bits;  conditional E-value: 7.4e-09
                SBHHHHHHHHHHHHTSSGGGEEEEETTEEE-TTSBHGGHTT CS
   ubiquitin 19 dtveelKekiaekegipaeqqrLiysGkvLedertleeygi 59
                +t++++K+++a+  gi++e+ rL+ +Gk L+de+++  +++
  KOO22636.1 19 ETISQVKAALARAHGIAPESARLVAKGKTLSDEESVPNCKM 59
                8*********************************9988876 PP

  == domain 2  score: 4.5 bits;  conditional E-value: 0.0049
                 TTEEE.-TTSBHGGHTTSTTEEEE CS
   ubiquitin  44 sGkvL.edertleeygiqdgstlh 66 
                 +Gk+L + e++l +y +++g+ + 
  KOO22636.1 117 AGKQLmRPELSLNDYTVTNGTEIF 140
                 79***9**************9886 PP

>> Rad60-SLD  Ubiquitin-2 like Rad60 SUMO-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.6   0.0   0.00057       3.4      21      58 ..      19      55 ..      15      60 .. 0.90
   2 ?    2.5   0.0     0.022   1.3e+02      14      68 ..      85     139 ..      74     142 .. 0.84

  Alignments for each domain:
  == domain 1  score: 7.6 bits;  conditional E-value: 0.00057
                SBHHHHHHHHHHHHT----TT-EEEETTEE--TTSBGG CS
   Rad60-SLD 21 ttvskLieayrkkkgipeeqkvrLiFDGeeLdpnstve 58
                +t+s+++ a++++ gi + +++rL+ +G++L++++ v 
  KOO22636.1 19 ETISQVKAALARAHGIAP-ESARLVAKGKTLSDEESVP 55
                589***************.************9998775 PP

  == domain 2  score: 2.5 bits;  conditional E-value: 0.022
                 EEEEETTSBHHHHHHHHHHHHT----TT-EEEETTEE--TTSBGGGSS--TTEEE CS
   Rad60-SLD  14 kikVkptttvskLieayrkkkgipeeqkvrLiFDGeeLdpnstvedldiedgdti 68 
                 +++V+++++vs+L+e+   + g++ +   +L    + ++p+  ++d+ +++g +i
  KOO22636.1  85 QVQVASSMRVSELAERATVALGLSGHRALYLEAGKQLMRPELSLNDYTVTNGTEI 139
                 79**************999999999999998877777778888888877777766 PP

>> zf-AN1  AN1-like Zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.9  11.3   0.00027       1.6       6      40 .]     377     412 ..     373     412 .. 0.74

  Alignments for each domain:
  == domain 1  score: 8.9 bits;  conditional E-value: 0.00027
      zf-AN1   6 Ckkkd..flp...fkCryCgkvFClkHrlpedHdCkklak 40 
                 C +++  + +    +Cr Cg+ FC+ H +  +H+Ck+++k
  KOO22636.1 377 CATRLpvT-AsiqARCR-CGELFCAAHMH--AHACKHDYK 412
                 66666431.134589**.*********87..7****9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (434 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       512  (0.0285571); expected 358.6 (0.02)
Passed bias filter:                      281  (0.0156729); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.46u 0.26s 00:00:00.72 Elapsed: 00:00:00.41
# Mc/sec: 3185.03
//
Query:       KOO22637.1  [L=345]
Description: hypothetical protein Ctob_003390 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (345 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       796  (0.0443973); expected 358.6 (0.02)
Passed bias filter:                      408  (0.0227564); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.46u 0.25s 00:00:00.71 Elapsed: 00:00:00.40
# Mc/sec: 2602.05
//
Query:       KOO22638.1  [L=211]
Description: 60s ribosomal protein l20 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    4.7e-43  146.1   3.2    4.7e-43  146.1   3.2    1.5  2  Ribosomal_L18A  Ribosomal proteins 50S-L18Ae/60S-L20/60S-L18A


Domain annotation for each model (and alignments):
>> Ribosomal_L18A  Ribosomal proteins 50S-L18Ae/60S-L20/60S-L18A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  146.1   3.2   2.6e-47   4.7e-43       2     120 ..      37     162 ..      36     163 .. 0.94
   2 ?   -2.3   0.0      0.25   4.4e+03      62      91 ..     171     201 ..     168     205 .. 0.69

  Alignments for each domain:
  == domain 1  score: 146.1 bits;  conditional E-value: 2.6e-47
                     EEEEEEEEEEET........................................................................TEEEEEEEEEE CS
  Ribosomal_L18A   2 keYeVvGrklpsekep....epkvyrmrifapnevvak...wyflkklkkvkkanGeilavkkieekkptkvknygiwlrydsrsgthnfykeyr 89 
                     ++Y+VvGr++p+ek +      kvyrm++fa+n+vva+   wyf+ kl +vkkanG+i++++ki+ek+p+kvkn+giw rydsr+gthn yke+r
      KOO22638.1  37 SQYQVVGRFVPNEKYSadsaMCKVYRMNLFARNNVVARsrfWYFMGKLCRVKKANGQIISINKIYEKSPLKVKNFGIWFRYDSRTGTHNAYKEIR 131
                     59**********98651111579************************************************************************ PP

                     ESSHHHHHHHHHHHHHHHS---GGGEEEEEE CS
  Ribosomal_L18A  90 dlteegaveqvYselgsrhrakrssIqIekv 120
                     +++ + a++ +Y ++++r rak + IqI+k 
      KOO22638.1 132 EMSLTAAINMMYMDMAGRSRAKSKAIQILKT 162
                     ****************************986 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 0.25
                     ..................TEEEEEEEEEEES CS
  Ribosomal_L18A  62 kptkvkny.giwlrydsrsgthnfykeyrdl 91 
                     k+  vk + +  +r+   ++  ++ k+yr +
      KOO22638.1 171 KRADVKQFhSQSIRFPLPHRVAKIAKKYRTT 201
                     5566777756677777778888888888876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (211 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       644  (0.0359195); expected 358.6 (0.02)
Passed bias filter:                      445  (0.0248201); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.24s 00:00:00.63 Elapsed: 00:00:00.37
# Mc/sec: 1704.94
//
Query:       KOO22639.1  [L=625]
Description: ferrochelatase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.3e-88  295.8   0.0    4.7e-88  295.3   0.0    1.2  1  Ferrochelatase  Ferrochelatase
    7.3e-10   38.7   0.0    1.5e-09   37.7   0.0    1.4  1  Rieske          Rieske [2Fe-2S] domain
    2.9e-06   27.2   0.0    5.5e-06   26.3   0.0    1.4  1  Rieske_2        Rieske-like [2Fe-2S] domain
     0.0014   19.1   0.0     0.0029   18.2   0.0    1.5  1  Chloroa_b-bind  Chlorophyll A-B binding protein
  ------ inclusion threshold ------
      0.061   13.7   0.0          5    7.5   0.0    2.6  2  CbiX            CbiX
      0.076   13.4   1.8       0.22   11.9   0.6    2.4  2  EccE            Putative type VII ESX secretion system transl


Domain annotation for each model (and alignments):
>> Ferrochelatase  Ferrochelatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  295.3   0.0   1.6e-91   4.7e-88       2     316 ..     202     534 ..     201     535 .. 0.95

  Alignments for each domain:
  == domain 1  score: 295.3 bits;  conditional E-value: 1.6e-91
                     EEEEEEE----SSCCCHHHHHHHHCT-TTTS-S-....TTTHHHHHHHHHHHHHHHHHHHHHHTTSS-SHHHHHHHHHHHHHHHHHHH---EEEE CS
  Ferrochelatase   2 tavLLlnlGgPekpedvrpflenllsdrrvielp....lllqkllaklilkerlekvaekYekigggSPlneitrkqaealekelaergidvkvy 92 
                     ++vLLl+ G Pe+p+dv+++l+n++ d+++ +lp    + ++ +la+li++er+e+++e  +  gg+SP+++  ++qa+al ++la+rg+d + +
      KOO22639.1 202 VGVLLLSVGAPETPDDVEEYLYNVFCDPEIRTLPpaisWAFKRPLAWLIARERAEEARESMRLAGGRSPQLATIQAQAKALGTALADRGVDARPF 296
                     69*****************************9998644567889*************************************************** PP

                     EEESSSSSBHHHHHHHHHCTT-SEEEEEES-SS--TTTHHHHHHHHHHHHHH.......TT-SSEEEEE---TT-HHHHHHHHHHHHHHHTTS-H CS
  Ferrochelatase  93 lamrywePsiedaleelkadgvervvvlplyPqysasttgssleeleralkk.......kreapevrvirqfydhpgyiealaesikealeelpe 180
                     +amryw+P++eda+e++ka+g++++v+lplyPq+s st+gs+l+ ler l             p ++v++ +y+ pg+++a+a+ i ++l++lp+
      KOO22639.1 297 IAMRYWKPFTEDAVEAMKAEGIQKLVILPLYPQFSLSTSGSALRVLERLLYTdpgfpmkTSVVPAWSVVPAWYNRPGFLQATAKGIADTLASLPR 391
                     **************************************************555677766778899****************************94 PP

                     C...C-EEEEEEE--BHHHHT.TT-SHHHHHHHHHHHHHHHT...TT-S-EEEEEE---SS..S-BSSSBHHHHHHHHCCC.-S-EEEE-TT-SS CS
  Ferrochelatase 181 ek..kakllfsaHglPeravkkkgdpYqqqveetarlvaeal...glkeevelayqSrvGp..eeWlePdtddtleelaekgvkaivvvpigFvs 268
                     +    a++l +a glP+++v++ gdpYq+qve+ ++lv ++l   g++++ +layq  +Gp   +WleP+t +++e+la++gv+++v+vpi+Fv 
      KOO22639.1 392 DArgTAHVLYTAQGLPRKYVDDLGDPYQEQVERCVQLVSDELgamGIANNRSLAYQGAFGPqqLRWLEPSTASEIERLAAQGVRSLVLVPISFVF 486
                     44467*************************************99988889***********8889****************************** PP

                     --HHHHIIIIIIIITTSTT..CCCEEE----TT-HHHHHHHHHHHHHH CS
  Ferrochelatase 269 DhlEtleeldiearelaeeaggekfvrvptlndspafiealadlveee 316
                     +h+ tl  +d e +  a+++g+++fvrvptl+ +++fi+ala++v+e+
      KOO22639.1 487 EHMATLNVMDCEFAGVAAACGIQSFVRVPTLGVEETFIGALATVVMEA 534
                     *********************************************986 PP

>> Rieske  Rieske [2Fe-2S] domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.7   0.0   4.9e-13   1.5e-09      16      78 ..      54     119 ..      44     123 .. 0.84

  Alignments for each domain:
  == domain 1  score: 37.7 bits;  conditional E-value: 4.9e-13
                 EEEEEETTEEEEEEE-TTS-EEEEESC-TTTT-BCGGSEEE...TT.EEE-TTT--EEE.TTSBEEE CS
      Rieske  16 pltvkvggeplvvlrdedgevyAlsdvCtHrgaplsegkid...ekgvleCpcHgwayd.adGkvik 78 
                  + v+  + p++v +  +g++yA++ +C+H+g p+++gk+    ++ +l+C++H++++  +dG+++k
  KOO22639.1  54 RTVVDGPNGPILVTKV-KGSYYAVDATCPHLGLPMKRGKVAdgaDGVTLTCSFHNSCWAmKDGSCKK 119
                 4555555678999997.******************999994466888*****************987 PP

>> Rieske_2  Rieske-like [2Fe-2S] domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.3   0.0   1.8e-09   5.5e-06      26      98 ..      64     156 ..      46     162 .. 0.88

  Alignments for each domain:
  == domain 1  score: 26.3 bits;  conditional E-value: 1.8e-09
                 EEEEE-TTS-EEEEESS-TTTSSSTCCCSEEEECTTCEEEE-TTT--EEETTT-BBSS.....................-TTSB-BEE-EEES.T CS
    Rieske_2  26 valfrlekeevyAidnldpaseanvlsrGlvgdkkgelvvasPlykqkfdLktGecle.....................deevslkvypvrve.d 98 
                 +++    k++ yA+d+++p     ++ rG+v+d ++ +++++  +++ + +k+G+c +                      +++s+k y+v v+ d
  KOO22639.1  64 ILVTK-VKGSYYAVDATCPH-LGLPMKRGKVADGADGVTLTCSFHNSCWAMKDGSCKKwvtgalgieneaaagvmgklgGQKRSIKSYKVAVNqD 156
                 33333.599***********.699******************************************************9999********99944 PP

>> Chloroa_b-bind  Chlorophyll A-B binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.2   0.0   9.6e-07    0.0029      16      49 ..     567     600 ..     500     617 .. 0.79

  Alignments for each domain:
  == domain 1  score: 18.2 bits;  conditional E-value: 9.6e-07
                     XTT-T.T-SBSHHHHHHHHHHHHHHHHHHHHHHH CS
  Chloroa_b-bind  16 DplglskdpetlkrlreaEliHGRvAMlavlGal 49 
                     D l+l  +++   + +eaE+i+GR+AM a++ al
      KOO22639.1 567 DQLQLVPQEQPWGFTQEAEIINGRIAMTAITLAL 600
                     5555555555566677777777777777777665 PP

>> CbiX  CbiX
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.2   0.0     0.037   1.1e+02      36      60 ..     302     326 ..     276     328 .. 0.88
   2 ?    7.5   0.0    0.0017         5      36      73 ..     458     496 ..     441     528 .. 0.74

  Alignments for each domain:
  == domain 1  score: 3.2 bits;  conditional E-value: 0.037
                 CECCSCCSSHHHHC-SBSEEEEEEE CS
        CbiX  36 eepsleealrelaeqgvkrivvvPl 60 
                  +p  e+a++++ ++g+++ v++Pl
  KOO22639.1 302 WKPFTEDAVEAMKAEGIQKLVILPL 326
                 568889******************7 PP

  == domain 2  score: 7.5 bits;  conditional E-value: 0.0017
                 CECCSCCSSHHHHC-SBSEEEEEEE.SSSSSHHHHTHHH CS
        CbiX  36 eepsleealrelaeqgvkrivvvPl.flfaGvhvkeDIp 73 
                  eps    +++la+qgv+  v+vP+ f+f+ + + +++ 
  KOO22639.1 458 LEPSTASEIERLAAQGVRSLVLVPIsFVFEHMATLNVMD 496
                 47999*******************867777666665555 PP

>> EccE  Putative type VII ESX secretion system translocon, EccE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.6   7.4e-05      0.22       7      57 ..     247     296 ..     241     312 .. 0.92
   2 ?   -1.9   0.0       1.4   4.3e+03      20      57 ..     442     479 ..     439     481 .. 0.76

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 7.4e-05
        EccE   7 tWlalrldpeenvaalsaRgggtegaaraaaaaarRlakaLreqGirarvl 57 
                  Wl+ r ++ee++++ +   gg+  + ++++a a+ l +aL+++G++ar+ 
  KOO22639.1 247 AWLIARERAEEARESMRLA-GGRSPQLATIQAQAKALGTALADRGVDARPF 296
                 6****************99.8999999999******************996 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 1.4
        EccE  20 aalsaRgggtegaaraaaaaarRlakaLreqGirarvl 57 
                  +l+++g+  +++ r +   +   +++L+ qG+r  vl
  KOO22639.1 442 RSLAYQGAFGPQQLRWLEPSTASEIERLAAQGVRSLVL 479
                 67777777778888888888888889999999997665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (625 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       400  (0.0223102); expected 358.6 (0.02)
Passed bias filter:                      336  (0.0187406); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.52u 0.25s 00:00:00.77 Elapsed: 00:00:00.39
# Mc/sec: 4858.77
//
Query:       KOO22640.1  [L=127]
Description: hypothetical protein Ctob_003384 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.099   12.7   0.0       0.15   12.1   0.0    1.3  1  DUF4787   Domain of unknown function (DUF4787)
       0.16   11.6   1.5          4    7.1   0.3    2.3  2  UPF0181   Uncharacterised protein family (UPF0181)


Domain annotation for each model (and alignments):
>> DUF4787  Domain of unknown function (DUF4787)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   1.7e-05      0.15      30      54 ..      44      68 ..      34      73 .. 0.89

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 1.7e-05
     DUF4787 30 rrCvSpsCYeelYeedpLEeGEiDv 54
                +r +S  C++ +Y + +L  GE D 
  KOO22640.1 44 LRAMSLLCFHGIYMHPALPRGERDW 68
                5789*******************94 PP

>> UPF0181  Uncharacterised protein family (UPF0181)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.2   0.0    0.0074        66      26      41 ..      69      84 ..      68      86 .. 0.89
   2 ?    7.1   0.3   0.00045         4       5      23 ..     100     118 ..      97     122 .. 0.88

  Alignments for each domain:
  == domain 1  score: 3.2 bits;  conditional E-value: 0.0074
     UPF0181 26 qGmssgeAIalVAqel 41
                q++ +g AI+lV ++l
  KOO22640.1 69 QSIATGIAIELVGRKL 84
                7899********9887 PP

  == domain 2  score: 7.1 bits;  conditional E-value: 0.00045
     UPF0181   5 llsLtHeqQQqAVEkIqeL 23 
                  + + He Q + V +Iq+ 
  KOO22640.1 100 APIIAHEKQPAQVTQIQKV 118
                 6899*************85 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (127 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       305  (0.0170115); expected 358.6 (0.02)
Passed bias filter:                      271  (0.0151152); expected 358.6 (0.02)
Passed Vit filter:                        12  (0.000669307); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.36u 0.21s 00:00:00.56 Elapsed: 00:00:00.36
# Mc/sec: 1063.61
//
Query:       KOO22641.1  [L=333]
Description: hypothetical protein Ctob_003385 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (333 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       281  (0.0156729); expected 358.6 (0.02)
Passed bias filter:                      240  (0.0133861); expected 358.6 (0.02)
Passed Vit filter:                        11  (0.000613531); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.44u 0.23s 00:00:00.67 Elapsed: 00:00:00.40
# Mc/sec: 2490.89
//
Query:       KOO22642.1  [L=294]
Description: hypothetical protein Ctob_003386 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (294 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       471  (0.0262703); expected 358.6 (0.02)
Passed bias filter:                      260  (0.0145016); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.41u 0.23s 00:00:00.64 Elapsed: 00:00:00.38
# Mc/sec: 2347.67
//
Query:       KOO22643.1  [L=346]
Description: NADH pyrophosphatase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.6e-15   57.3   0.4    2.8e-15   56.5   0.4    1.3  1  NUDIX           NUDIX domain
    1.6e-05   24.5   4.8    1.6e-05   24.5   4.8    2.3  2  zf-NADH-PPase   NADH pyrophosphatase zinc ribbon domain
  ------ inclusion threshold ------
      0.031   14.2   2.0      0.065   13.2   2.0    1.4  1  OrfB_Zn_ribbon  Putative transposase DNA-binding domain
       0.12   12.4   0.6       0.26   11.4   0.6    1.5  1  Zn_Tnp_IS91     Transposase zinc-binding domain


Domain annotation for each model (and alignments):
>> NUDIX  NUDIX domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.5   0.4   6.2e-19   2.8e-15       3     115 ..     203     308 ..     201     321 .. 0.84

  Alignments for each domain:
  == domain 1  score: 56.5 bits;  conditional E-value: 6.2e-19
                 EEEEEEEEEETTSEEEEEEESSSSTTT..EESSEEECBTTSHHHHHHHHHHHHHHSEEEEEE..EEEEEEEEEEEEEEEEEEEEEEEEEEEEEECSGCS CS
       NUDIX   3 rravgvvllnekgevLlvrrskkpfpg..WelPgGkvepgEtpeeAArREleEEtGleaell..ellgrlhylapydgpygdeheilyvfleevegele 97 
                  ++v+v+++++++ +Ll r +   +p+  +++ +G+ve gEt+ee+++RE+ EE+G++++ +  +++g         +p+  ++++++ fl + ++e+ 
  KOO22643.1 203 DPSVIVLVTRGDK-CLLGRKK--EWPAgrYSTLAGFVEFGETIEECVLREMMEEAGVRCDRTslRFVG--------SQPWLFPRSLMVGFLVQTKEEVL 290
                 5789999999995.9999977..44444789*************************988444348888........66888899*******99999999 PP

                 STSTTTEEEEEEEEHHHH CS
       NUDIX  98 pndenevsevrwvpleel 115
                 + de+e+++++w++ e +
  KOO22643.1 291 HVDEDELEDAQWFEREFV 308
                 999**********98865 PP

>> zf-NADH-PPase  NADH pyrophosphatase zinc ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.5   0.1      0.11   4.8e+02      16      25 ..      55      64 ..      54      65 .. 0.85
   2 !   24.5   4.8   3.5e-09   1.6e-05       4      31 ..     171     198 ..     168     198 .. 0.93

  Alignments for each domain:
  == domain 1  score: 0.5 bits;  conditional E-value: 0.11
  zf-NADH-PPase 16 aeggwarvCp 25
                   a+++++r C+
     KOO22643.1 55 AKAERGRDCE 64
                   689******6 PP

  == domain 2  score: 24.5 bits;  conditional E-value: 3.5e-09
  zf-NADH-PPase   4 rFCgrCGaptepaeggwarvCpaCgleh 31 
                    + C+ CG++t+p ++g+ r C++Cg+++
     KOO22643.1 171 PHCSACGGKTKPFRNGRNRKCEDCGTRY 198
                    68************************97 PP

>> OrfB_Zn_ribbon  Putative transposase DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   2.0   1.4e-05     0.065      30      56 ..     172     198 ..     169     203 .. 0.93

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 1.4e-05
  OrfB_Zn_ribbon  30 tCseCgsknkealsgrtfkCpnCgfea 56 
                      Cs Cg k k+ ++gr+ kC++Cg+++
      KOO22643.1 172 HCSACGGKTKPFRNGRNRKCEDCGTRY 198
                     5***********************975 PP

>> Zn_Tnp_IS91  Transposase zinc-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.6   5.7e-05      0.26      41      69 ..     172     200 ..     159     203 .. 0.91

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 5.7e-05
  Zn_Tnp_IS91  41 eCeeCghekivyfsCksrhCpsCqkkate 69 
                  +C+ Cg +++ +   ++r C  C+++++ 
   KOO22643.1 172 HCSACGGKTKPFRNGRNRKCEDCGTRYRP 200
                  7************************9975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (346 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       327  (0.0182386); expected 358.6 (0.02)
Passed bias filter:                      277  (0.0154498); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.47u 0.25s 00:00:00.72 Elapsed: 00:00:00.45
# Mc/sec: 2327.89
//
Query:       KOO22644.1  [L=129]
Description: hypothetical protein Ctob_003389 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (129 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       236  (0.013163); expected 358.6 (0.02)
Passed bias filter:                      202  (0.0112667); expected 358.6 (0.02)
Passed Vit filter:                         6  (0.000334653); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.24s 00:00:00.61 Elapsed: 00:00:00.40
# Mc/sec: 978.41
//
Query:       KOO22645.1  [L=191]
Description: hypothetical protein Ctob_003380 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.7e-12   45.9   0.2    7.3e-12   45.0   0.2    1.6  1  GRIP      GRIP domain
  ------ inclusion threshold ------
       0.11   12.4   0.1       0.16   11.8   0.1    1.3  1  ACCA      Acetyl co-enzyme A carboxylase carboxyltransferase 


Domain annotation for each model (and alignments):
>> GRIP  GRIP domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.0   0.2   8.2e-16   7.3e-12       2      40 ..     128     166 ..     127     175 .. 0.95

  Alignments for each domain:
  == domain 1  score: 45.0 bits;  conditional E-value: 8.2e-16
        GRIP   2 anleYLKNVllqFLeskeaserkqLvpVlstlLkfspeE 40 
                 +nl YL++V+++F+e    +e +qL+ V++t+L+f++++
  KOO22645.1 128 QNLDYLRHVIVKFIELEGSDESEQLFEVIATVLQFDEKD 166
                 7************************************98 PP

>> ACCA  Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.1   1.8e-05      0.16      63     110 ..     124     171 ..      82     191 .] 0.67

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 1.8e-05
        ACCA  63 peRpktldyiealfedfvelhGDrafadDkAivgglarlegqpvmvig 110
                 +  ++ ldy+++++ +f+el+G ++ ++   +++ + +++++ v+ + 
  KOO22645.1 124 QADSQNLDYLRHVIVKFIELEGSDESEQLFEVIATVLQFDEKDVLRLV 171
                 3446789******************99999999999999998776543 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (191 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       883  (0.0492498); expected 358.6 (0.02)
Passed bias filter:                      520  (0.0290033); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.44u 0.26s 00:00:00.70 Elapsed: 00:00:00.41
# Mc/sec: 1402.04
//
Query:       KOO22646.1  [L=554]
Description: hypothetical protein Ctob_003381 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
        1.9    8.6   6.4       0.29   11.2   1.1    2.2  2  COPI_assoc  COPI associated protein


Domain annotation for each model (and alignments):
>> COPI_assoc  COPI associated protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   1.1   1.6e-05      0.29       7      74 ..      33     100 ..      30     139 .. 0.85
   2 ?   -1.0   0.3     0.096   1.7e+03      74     105 ..     200     232 ..     160     253 .. 0.75

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 1.6e-05
  COPI_assoc   7 lnlvvgglaillgisqliilfsnflsfilsiYiillgivlillEfrvpfeiykyfsfmfsylGRGlfy 74 
                 ++l +g l+ ll+ +++ ++f   ++  l++  ++ g  l+++E+r  +   +y+s m++ +  ++++
  KOO22646.1  33 MHLLIGLLTQLLSGTRMPSIFAPAHNAALACITLAAGSELVVAELRRNARSIAYISCMITLFTIACVF 100
                 7899********************************************************99755443 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 0.096
  COPI_assoc  74 yillgllvsyggvlsilialllfl.vGLvyill 105
                 ++l g ++s+ + + i i+l +++ ++L+y++l
  KOO22646.1 200 MTLEGTIISFCSTVAIQIGLSVVHgIALAYLCL 232
                 455567777777777777776554467777777 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (554 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       580  (0.0323498); expected 358.6 (0.02)
Passed bias filter:                      295  (0.0164538); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.51u 0.24s 00:00:00.75 Elapsed: 00:00:00.41
# Mc/sec: 4090.85
//
Query:       KOO22647.1  [L=229]
Description: hypothetical protein Ctob_003387 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (229 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       399  (0.0222544); expected 358.6 (0.02)
Passed bias filter:                      366  (0.0204139); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.42u 0.24s 00:00:00.65 Elapsed: 00:00:00.39
# Mc/sec: 1743.87
//
Query:       KOO22648.1  [L=685]
Description: bifunctional aminoacyl-tRNA synthetase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    5.9e-25   87.7   0.1    1.2e-24   86.7   0.1    1.5  1  tRNA_edit       Aminoacyl-tRNA editing domain
    1.3e-20   73.3   0.0    3.1e-20   72.1   0.0    1.6  1  HGTP_anticodon  Anticodon binding domain
    1.4e-20   73.2   1.6    3.1e-20   72.1   0.2    2.4  3  ProRS-C_1       Prolyl-tRNA synthetase, C-terminal
    3.5e-17   62.9   0.0    6.4e-17   62.1   0.0    1.4  1  tRNA-synt_2b    tRNA synthetase class II core domain (G, H, P


Domain annotation for each model (and alignments):
>> tRNA_edit  Aminoacyl-tRNA editing domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   86.7   0.1   2.7e-28   1.2e-24      21     122 ..      44     150 ..      25     151 .. 0.95

  Alignments for each domain:
  == domain 1  score: 86.7 bits;  conditional E-value: 2.7e-28
   tRNA_edit  21 iaKtlvlkdkkgelvlvllpgdreldlkklakllg..akklrlaseeelrellgvepGgvgPlglk...aagvpvllDeslkeyptvvvgagengatle 114
                 +aK+l++kdkk +++l+++ +dr+ld+kkl  llg  +k++r+a+e+ l+e lg+ +G+ +Plg+    a  v+v+lDe+l++   + +++++n++tl 
  KOO22648.1  44 FAKNLFIKDKKAGFFLLVVTADRKLDMKKLPGLLGkgTKEFRFADEAALKEKLGCGKGAASPLGVMtdaAGEVTVVLDEELMGAAKIGCHPCQNDHTLA 142
                 79*********************************644******************************999**************************** PP

   tRNA_edit 115 lspedlrk 122
                 l+p++l  
  KOO22648.1 143 LTPDQLKA 150
                 ****9975 PP

>> HGTP_anticodon  Anticodon binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   72.1   0.0   6.8e-24   3.1e-20       1      89 [.     470     562 ..     470     565 .. 0.94

  Alignments for each domain:
  == domain 1  score: 72.1 bits;  conditional E-value: 6.8e-24
                     SEEEEESSSS....HHHHHHHHHHHHHHHHTTTSEEEEES.SSSTHHHHHHHHHHTT-SEEEEE-HHHHHHTEEEEEETTTCEEEEEETTHHHH CS
  HGTP_anticodon   1 qvvviplnek....aeeleeyakklaeeLraagirveldd.snesigkkireadllgipfavvvGekelekgtvtvrdrdtreqervsldelve 89 
                     qvv++p+ +     ++ l   a++la++Lra g+rveldd +n+++g+k+++++l+g+p+++++G+k+lek++v v +rdt ++  v+ + l++
      KOO22648.1 470 QVVIVPIVMSgmnlDT-LSGAASDLASQLRASGVRVELDDrDNYNPGWKYNYWELKGVPLRLELGPKDLEKRQVRVVRRDTNAKLDVPWSVLPQ 562
                     8*******99998555.99******************************************************************999887765 PP

>> ProRS-C_1  Prolyl-tRNA synthetase, C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.0       2.9   1.3e+04      15      38 ..      14      41 ..       5      54 .. 0.57
   2 ?   -2.4   0.0       1.3   5.7e+03      25      42 ..      89     136 ..      87     151 .. 0.58
   3 !   72.1   0.2   6.9e-24   3.1e-20       1      69 []     593     685 .]     593     685 .] 0.97

  Alignments for each domain:
  == domain 1  score: -3.5 bits;  conditional E-value: 2.9
                EEEESS.GHHHHHHHHHHH...S-EEEE CS
   ProRS-C_1 15 lapWcg.eeecEekIkeet...gakslc 38
                 +pW++ e +  ek++e     + ksl+
  KOO22648.1 14 SIPWECvEHNPIEKVEEGLeldSIKSLG 41
                5677552333344454444444455555 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 1.3
                 HHHHHHHH..............................S-EEEEEESS CS
   ProRS-C_1  25 EekIkeet..............................gakslcipfd 42 
                 E+ +ke+                               +ak+ c p +
  KOO22648.1  89 EAALKEKLgcgkgaasplgvmtdaagevtvvldeelmgAAKIGCHPCQ 136
                 556666666666644444444444444445555555566777777765 PP

  == domain 3  score: 72.1 bits;  conditional E-value: 6.9e-24
                 HHHHHHHHHTT-EEEEEESSGHHH...HHHHHHHH.....................S-EEEEEESSB-SSCCCSB-TTT-SB-SEEEEEE-B- CS
   ProRS-C_1   1 weefkealekkgfvlapWcgeeec...EekIkeet.....................gakslcipfdqepseegtkCivcgkpakkwvlfgrsY 69 
                 w++f+++l+ ++++l+p+c++ee+   Ee +ke++                     +ak+lcipf+q+p++egtkC+++gk a++wvl+grsY
  KOO22648.1 593 WKDFVPTLQLGHMALTPFCNDEEAthfEELVKEKSkaealaasgaeaedartstsvAAKTLCIPFEQPPLPEGTKCFISGKLATCWVLWGRSY 685
                 99******************9986666****************************************************************** PP

>> tRNA-synt_2b  tRNA synthetase class II core domain (G, H, P, S and T)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.1   0.0   1.4e-20   6.4e-17       9     176 ..     283     451 ..     276     454 .. 0.87

  Alignments for each domain:
  == domain 1  score: 62.1 bits;  conditional E-value: 1.4e-20
                   EEEEE-SSSHHHHHHHHHHHEEEB.GGSSEEEEEEEEEEBTTTSTBCTTTB-SEEEEEEEEEEES.GGGHHHHHHHHHHHHHHHHHHTT.SCEEEEE CS
                   xxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  tRNA-synt_2b   9 reyiLkPtneetfvelirdevlrs.krLPlklyqiqtkyRdEksdsrGLlRvreFhqkdgyvfha.easlddslrdlikaisriferlglefraiie 103
                   +  +++Pt+e+ ++ ++  + +rs ++LPl l q +++ R E +   + lR reF +++g+  h   +++d ++ d++  ++ i+e+l+  + +i++
    KOO22648.1 283 QPIAIRPTSETIMYPAYACW-IRShRDLPLLLNQWCSVVRWEFKHPTPFLRTREFLWQEGHTAHGsYEEADKMVMDILGHYKAIYEELL-AVPVIKG 377
                   56789*************88.***555****************9788*****************97799******************98.5577888 PP

                   E.GTTSC.BTTSEEEEEEEEETTTSEEEEEEEEEEEETHHHHHTTEEEECTTSSEEEEEEEEEEEEHHHHHHHHH CS
                   x.xxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  tRNA-synt_2b 104 l.msaks.adykdkkefeavsesltkgieigtiqklgtrlserlgatvldennreksvimicaaigveRllsail 176
                     +++++ a +  ++ +ea+++  +++i+ +t ++lg+++ + +++++ d++++++ +  +  ++  +R +++++
    KOO22648.1 378 YkTEKEKfAGGFRTTTVEAYVPATGRAIQGATSHNLGKNFGKMFKIEYEDKQGQKQIPWQTSWGFT-TRSIGVMV 451
                   7633333266778999******************************************77776665.89888876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (685 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       326  (0.0181828); expected 358.6 (0.02)
Passed bias filter:                      303  (0.0169); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.56u 0.23s 00:00:00.79 Elapsed: 00:00:00.41
# Mc/sec: 5061.51
//
Query:       KOO22649.1  [L=366]
Description: sel1 domain protein repeat-containing protein, partial [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.1e-41  138.9  55.0    2.8e-07   31.0   0.7    8.4  9  Sel1      Sel1 repeat


Domain annotation for each model (and alignments):
>> Sel1  Sel1 repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.4   0.2   3.3e-08   0.00058      12      38 .]       1      27 [.       1      27 [. 0.98
   2 !   23.7   1.9   3.2e-09   5.7e-05       1      37 [.      28      62 ..      28      63 .. 0.96
   3 !   31.0   0.7   1.6e-11   2.8e-07       1      37 [.      64      98 ..      64      98 .. 0.97
   4 !   22.2   2.4     9e-09   0.00016       1      37 [.     100     134 ..     100     135 .. 0.95
   5 !   25.1   0.6   1.1e-09     2e-05       2      38 .]     137     171 ..     136     171 .. 0.97
   6 !   27.4   0.3   2.2e-10   3.9e-06       2      38 .]     173     207 ..     172     207 .. 0.95
   7 !   24.4   0.8   1.9e-09   3.3e-05       1      36 [.     208     241 ..     208     243 .. 0.92
   8 ?    0.8   0.5     0.049   8.7e+02       1      14 [.     244     255 ..     244     260 .. 0.86
   9 ?   -3.6   0.1         1   1.8e+04      18      26 ..     291     299 ..     286     300 .. 0.71

  Alignments for each domain:
  == domain 1  score: 20.4 bits;  conditional E-value: 3.3e-08
        Sel1 12 lylnGlgvpkDpekAiewyekAAeqGd 38
                ++l+G+gv +D ++A  ++++AA+qG+
  KOO22649.1  1 MHLDGRGVAQDDKRAAALFKLAADQGH 27
                79************************9 PP

  == domain 2  score: 23.7 bits;  conditional E-value: 3.2e-09
        Sel1  1 aeAmyrLGmfylylnGlgvpkDpekAiewyekAAeqG 37
                a+A++ L+   ++ nGlg  +D ++A  ++++AA+qG
  KOO22649.1 28 AAAQCELA--RMHRNGLGAAQDDKRAAALFKLAADQG 62
                68******..999***********************9 PP

  == domain 3  score: 31.0 bits;  conditional E-value: 1.6e-11
        Sel1  1 aeAmyrLGmfylylnGlgvpkDpekAiewyekAAeqG 37
                a+A+ +LG   ++++G+gv kD+++A e++++AA+qG
  KOO22649.1 64 AAAQSDLG--VMHHDGRGVAKDYKRAAELFQLAADQG 98
                68******..999***********************9 PP

  == domain 4  score: 22.2 bits;  conditional E-value: 9e-09
        Sel1   1 aeAmyrLGmfylylnGlgvpkDpekAiewyekAAeqG 37 
                 a+A++ LG   ++ +G+gv +D+e+A  ++++AA+q+
  KOO22649.1 100 AAAQCYLG--AMHRDGRGVAQDYERAGALFKLAADQD 134
                 68******..999**********************97 PP

  == domain 5  score: 25.1 bits;  conditional E-value: 1.1e-09
        Sel1   2 eAmyrLGmfylylnGlgvpkDpekAiewyekAAeqGd 38 
                 +A++ LG   ++ +G+gv +D ++A  ++++AA+qG+
  KOO22649.1 137 AAQCSLG--HMHRDGRGVAQDDKRAAALFKLAADQGN 171
                 699****..***************************7 PP

  == domain 6  score: 27.4 bits;  conditional E-value: 2.2e-10
        Sel1   2 eAmyrLGmfylylnGlgvpkDpekAiewyekAAeqGd 38 
                  A++ L+   ++l+G+gv +D ++A  ++++AA+qG+
  KOO22649.1 173 PAQFELA--GMHLDGRGVAQDDKRAAALLQLAADQGN 207
                 59*****..888************************7 PP

  == domain 7  score: 24.4 bits;  conditional E-value: 1.9e-09
        Sel1   1 aeAmyrLGmfylylnGlgvpkDpekAiewyekAAeq 36 
                 a+A++ LG++   l+G+gv +D  +A  ++++AA+q
  KOO22649.1 208 AAAQCYLGLMR--LDGRGVAQDDTRAAALFKLAADQ 241
                 68******666..**********************9 PP

  == domain 8  score: 0.8 bits;  conditional E-value: 0.049
        Sel1   1 aeAmyrLGmfylyl 14 
                 a A++ LG  y++l
  KOO22649.1 244 AMAQCSLG--YMHL 255
                 5799****..9997 PP

  == domain 9  score: -3.6 bits;  conditional E-value: 1
        Sel1  18 gvpkDpekA 26 
                 g+ +D ++A
  KOO22649.1 291 GLSRDDKQA 299
                 589999988 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (366 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1018  (0.0567795); expected 358.6 (0.02)
Passed bias filter:                      420  (0.0234257); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.20s 00:00:00.68 Elapsed: 00:00:00.36
# Mc/sec: 3064.94
//
Query:       KOO22650.1  [L=656]
Description: hypothetical protein Ctob_000586 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (656 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       363  (0.0202465); expected 358.6 (0.02)
Passed bias filter:                      280  (0.0156172); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.51u 0.24s 00:00:00.75 Elapsed: 00:00:00.37
# Mc/sec: 5268.75
//
Query:       KOO22651.1  [L=484]
Description: hsp chaperone complex subunit cns1 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.2e-08   33.0   2.7     0.0086   15.9   0.0    2.6  2  TPR_1     Tetratricopeptide repeat
    1.3e-05   25.0   3.7      0.058   13.5   3.2    2.7  2  TPR_2     Tetratricopeptide repeat
    0.00079   19.7   4.8     0.0038   17.5   4.8    2.1  1  TPR_12    Tetratricopeptide repeat
  ------ inclusion threshold ------
      0.018   15.1   1.8       0.64   10.2   1.2    3.0  2  TPR_7     Tetratricopeptide repeat
      0.041   13.7   0.2      0.082   12.7   0.2    1.6  1  DUF2239   Uncharacterized protein conserved in bacteria (DUF2
       0.68   10.6   5.2        1.3    9.7   3.4    2.1  2  TPR_16    Tetratricopeptide repeat
        3.7    8.6   5.7        7.8    7.6   1.2    2.9  2  TPR_14    Tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> TPR_1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.6   2.5   8.1e-06     0.021       1      29 [.     394     422 ..     394     423 .. 0.96
   2 !   15.9   0.0   3.4e-06    0.0086       3      34 .]     435     466 ..     434     466 .. 0.95

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 8.1e-06
                 HHHHHHHHHHHHHTT-HHHHHHHHHHHHH CS
       TPR_1   1 akalynlGnayfklgkydeAleyyekALe 29 
                 a a++  Gna ++  ++++A + y +AL+
  KOO22651.1 394 ALAYKEQGNAQYRASRFEDAAQLYTQALQ 422
                 679*************************8 PP

  == domain 2  score: 15.9 bits;  conditional E-value: 3.4e-06
                 HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH CS
       TPR_1   3 alynlGnayfklgkydeAleyyekALelnPnn 34 
                 ++ n++++++++ +++ Al++ e +L+ +P n
  KOO22651.1 435 CYSNRAACFQQMREPQLALADVEHVLRFDPGN 466
                 69****************************87 PP

>> TPR_2  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.5   3.2   2.3e-05     0.058       1      29 [.     394     422 ..     394     423 .. 0.95
   2 !    9.0   0.0   0.00062       1.6       3      34 .]     435     466 ..     434     466 .. 0.95

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 2.3e-05
       TPR_2   1 aealynlGlayyklgdyeeAleafekAle 29 
                 a a+ ++G+a y++ ++e+A++++ +Al+
  KOO22651.1 394 ALAYKEQGNAQYRASRFEDAAQLYTQALQ 422
                 67999***********************8 PP

  == domain 2  score: 9.0 bits;  conditional E-value: 0.00062
       TPR_2   3 alynlGlayyklgdyeeAleafekAleldPnn 34 
                 ++ n++ +  ++ +++ Al++ e +l+ dP+n
  KOO22651.1 435 CYSNRAACFQQMREPQLALADVEHVLRFDPGN 466
                 689***************************87 PP

>> TPR_12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5   4.8   1.5e-06    0.0038       3      74 ..     394     462 ..     392     464 .. 0.91

  Alignments for each domain:
  == domain 1  score: 17.5 bits;  conditional E-value: 1.5e-06
      TPR_12   3 atalnnlaavlrrlgrydeAlellekaleiarrllGpdhpltattlrnLgrlyralgryeeAlelleealai 74 
                 a a+ + +++ +r+ r+++A +l+ +al+++ +      +l+++++ n + +++++ +++ Al+  e++l+ 
  KOO22651.1 394 ALAYKEQGNAQYRASRFEDAAQLYTQALQQI-AC--ASTELALSCYSNRAACFQQMREPQLALADVEHVLRF 462
                 5678789************************.66..67889***********************99999985 PP

>> TPR_7  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   1.2   0.00025      0.64       3      26 ..     398     421 ..     396     428 .. 0.84
   2 ?    1.9   0.0      0.11   2.8e+02       1      34 [.     435     466 ..     435     468 .. 0.84

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.00025
       TPR_7   3 lnLarlysrlGdyeeAielyeqsL 26 
                    ++++ r  ++e+A++ly+q+L
  KOO22651.1 398 KEQGNAQYRASRFEDAAQLYTQAL 421
                 5568999999************87 PP

  == domain 2  score: 1.9 bits;  conditional E-value: 0.11
       TPR_7   1 aLlnLarlysrlGdyeeAielyeqsLaltkdped 34 
                 +++n a +++++++ + A+   e   +l+ dp++
  KOO22651.1 435 CYSNRAACFQQMREPQLALADVEH--VLRFDPGN 466
                 78999***********99999999..77777766 PP

>> DUF2239  Uncharacterized protein conserved in bacteria (DUF2239)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.2   3.2e-05     0.082      66     109 ..     360     403 ..     301     433 .. 0.77

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 3.2e-05
     DUF2239  66 aeeeeeeaeekrgrGRPkLGvvaREvtLLprhWeWLaaqpgGaS 109
                   ++++++ee r+ G  kLG  a+ vtL+  hW+ La ++ G +
  KOO22651.1 360 IVSRADHHEELRKCGFSKLGARAKLVTLVQPHWKALAYKEQGNA 403
                 55667788999**************************9888865 PP

>> TPR_16  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   3.4   0.00052       1.3       3      25 ..     400     422 ..     398     467 .. 0.85
   2 ?   -1.7   0.1       1.9   4.9e+03       9      37 ..     445     470 ..     438     475 .. 0.64

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 0.00052
      TPR_16   3 laraalragdyddAaaaleaalk 25 
                 +++a +ra +++dAa ++++al 
  KOO22651.1 400 QGNAQYRASRFEDAAQLYTQALQ 422
                 89999999999999999999984 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 1.9
      TPR_16   9 ragdyddAaaaleaalkrdpssPdaaeAl 37 
                 + ++++ A+a  e +l+ d   P +a Al
  KOO22651.1 445 QMREPQLALADVEHVLRFD---PGNAKAL 470
                 5666677777776666666...6666665 PP

>> TPR_14  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.6   1.2     0.003       7.8       3      30 ..     396     423 ..     394     437 .. 0.88
   2 ?    2.0   0.2      0.19   4.9e+02      11      42 ..     443     474 ..     435     475 .. 0.81

  Alignments for each domain:
  == domain 1  score: 7.6 bits;  conditional E-value: 0.003
      TPR_14   3 allalaeallalGdpdeAiallrralal 30 
                 a+++ + a +++ ++++A++l+ +al++
  KOO22651.1 396 AYKEQGNAQYRASRFEDAAQLYTQALQQ 423
                 7888999*******************96 PP

  == domain 2  score: 2.0 bits;  conditional E-value: 0.19
      TPR_14  11 llalGdpdeAiallrralalaPddaeawllla 42 
                 + + ++p+ A+a  + +l+ +P++a a+ + a
  KOO22651.1 443 FQQMREPQLALADVEHVLRFDPGNAKALARKA 474
                 55678899999999999999999999998876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (484 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       515  (0.0287244); expected 358.6 (0.02)
Passed bias filter:                      416  (0.0232026); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.53u 0.21s 00:00:00.74 Elapsed: 00:00:00.38
# Mc/sec: 3852.25
//
Query:       KOO22652.1  [L=310]
Description: methyltransferase type 11 domain protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      2e-13   50.5   0.0    2.9e-13   50.0   0.0    1.2  1  Methyltransf_23  Methyltransferase domain
    1.3e-11   45.1   0.0    2.3e-11   44.2   0.0    1.4  1  Methyltransf_25  Methyltransferase domain
    2.9e-09   36.6   0.0    3.8e-09   36.2   0.0    1.2  1  Ubie_methyltran  ubiE/COQ5 methyltransferase family
    3.1e-09   37.4   0.0    5.4e-09   36.6   0.0    1.3  1  Methyltransf_11  Methyltransferase domain
    1.7e-08   34.4   0.0    2.6e-08   33.8   0.0    1.2  1  Methyltransf_31  Methyltransferase domain
    1.9e-08   34.9   0.0    3.1e-08   34.3   0.0    1.3  1  Methyltransf_12  Methyltransferase domain
  ------ inclusion threshold ------
      0.029   14.4   0.6      0.046   13.8   0.6    1.3  1  PTS_IIA          PTS system, Lactose/Cellobiose specific IIA 


Domain annotation for each model (and alignments):
>> Methyltransf_23  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.0   0.0   1.1e-16   2.9e-13       1     137 [.      45     198 ..      45     225 .. 0.67

  Alignments for each domain:
  == domain 1  score: 50.0 bits;  conditional E-value: 1.1e-16
  Methyltransf_23   1 ydaqreeelsdklerllpk....lraggrvLdiGcGtGillevlren...gf.svtgvDlspeaveiae...kakkaqkdqfdeqeaaepqg.. 81 
                      yda+r++ l + +e+l+++      +gg ++d+G GtG +le + ++    f +v++vDl+  + e a+   +    +   ++ q  ++++   
       KOO22652.1  45 YDAFRKR-LLQGREELMAEakaaHGEGGIWVDLGGGTGANLEMMGDEaimSFaKVYLVDLCGPLLEVARkrcE----ERGWHNVQIVEDDATtw 133
                      5666654.44455555533223367788****************775333235********999999866662....44444444222222222 PP

  Methyltransf_23  82 .......kfdlIvlrevlehvpdppellrqiatllkpgGylllse..plaslkedrllldwlylv 137
                             + +lI+ +++l  +pd+ +++ ++a+ll+pgG++   +  ++++++++ ++++ ++++
       KOO22652.1 134 vpeegygQVNLITFSYSLTMIPDWYAAIEHAAALLAPGGLIGTVDfyVARKHPAEGMAKHSWLQR 198
                      2222466**********************************999954466665555555533333 PP

>> Methyltransf_25  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.2   0.0     9e-15   2.3e-11       2      97 .]      74     172 ..      74     172 .. 0.90

  Alignments for each domain:
  == domain 1  score: 44.2 bits;  conditional E-value: 9e-15
                      EEET-TTSHHHHHHHCTS..TSSEEEEEESSHHHHHHHHHHHHHTTT.TEEEEESBCCGBS..SSTTTEEEEEEESTGGGSSHHHHHHHHHHHH CS
  Methyltransf_25   2 LdlGcGtGrltlalakrl..gkakvtgvDiseemleaareraeeegl.nvefvqgdaedlp..fedgsfDlvvssgalhhlsdedlekalkeia 90 
                      +dlG GtG +++++ ++   + akv+ vD+   +le ar+r+ee+g+ nv++v+ da+++   +  g+++l++ s++l +++  d+ +a++++a
       KOO22652.1  74 VDLGGGTGANLEMMGDEAimSFAKVYLVDLCGPLLEVARKRCEERGWhNVQIVEDDATTWVpeEGYGQVNLITFSYSLTMIP--DWYAAIEHAA 165
                      59*************9987669*************************************85123556999999998888876..9********* PP

                      HHEEEEE CS
  Methyltransf_25  91 rvLkpgG 97 
                       +L pgG
       KOO22652.1 166 ALLAPGG 172
                      ******9 PP

>> Ubie_methyltran  ubiE/COQ5 methyltransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.2   0.0   1.5e-12   3.8e-09      44     154 ..      66     179 ..      29     198 .. 0.84

  Alignments for each domain:
  == domain 1  score: 36.2 bits;  conditional E-value: 1.5e-12
                      -S--TTEEEEES-TT-HHHHHHHHHHHHHH.EEEEEES-HHHHHHHHHHHHHHTSSTEEEEE--TTT.-TTS-.T-EEEEEEES-GGG-S-HHH CS
  Ubie_methyltran  44 avkrgakvlDvagGtgDlafklsdsvgekg.kvvvlDinenmLkvgekklkeegkinieflqanaee.Lpfed.dsfDvvtvsfGlrnvtDklk 134
                      a+ +g   +D+ gGtg     + d++  ++ kv ++D+   +L+v++k+ +e+g  n++ +  +a   +p+e  +  +++t s+ l  ++D   
       KOO22652.1  66 AHGEGGIWVDLGGGTGANLEMMGDEAIMSFaKVYLVDLCGPLLEVARKRCEERGWHNVQIVEDDATTwVPEEGyGQVNLITFSYSLTMIPDWYA 159
                      445666889******9766666665555544*******************************99987357766899****************** PP

                      HHHHHHHHEEEEEEEEEEEE CS
  Ubie_methyltran 135 aLkeayrvlkpGGrlvvlef 154
                      a+++a   l pGG +  ++f
       KOO22652.1 160 AIEHAAALLAPGGLIGTVDF 179
                      *************9988877 PP

>> Methyltransf_11  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.6   0.0   2.1e-12   5.4e-09       1      94 [.      74     174 ..      74     175 .. 0.93

  Alignments for each domain:
  == domain 1  score: 36.6 bits;  conditional E-value: 2.1e-12
                      EEET-TTSHHHHHHHHTT....SEEEEEES-HHHHHHHHHHCCHHT-.EEEETTEECCC.TSS-T.T-EEEEEEES-CCC-CCHHHHHHHHHHH CS
  Methyltransf_11   1 LdvGcGtGrlaealakrg....arvvgvDlskemlklakekaseegl.kvefvvadaek.lpfed.nsfDlvvssevlhhvedpekalkeiaRv 87 
                      +d+G GtG+++e + + +    a+v+ vDl+  +l++a+++ +e+g  +v++v+ da++ +p e  +++ l++ s +l+ ++d+ +a++ +a +
       KOO22652.1  74 VDLGGGTGANLEMMGDEAimsfAKVYLVDLCGPLLEVARKRCEERGWhNVQIVEDDATTwVPEEGyGQVNLITFSYSLTMIPDWYAAIEHAAAL 167
                      59*************7777899************************************944755558*************************** PP

                      EEEEEEE CS
  Methyltransf_11  88 LkpgGll 94 
                      L pgGl+
       KOO22652.1 168 LAPGGLI 174
                      *****86 PP

>> Methyltransf_31  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.8   0.0     1e-11   2.6e-08       8     121 ..      74     188 ..      68     224 .. 0.89

  Alignments for each domain:
  == domain 1  score: 33.8 bits;  conditional E-value: 1e-11
  Methyltransf_31   8 lDlGCGtGeltfelaeelgp.kaevvGiDiseeaielArenaqklgldnveFeqgdiee.lekl.ledekfDlilsnevlnaladpdkileeie 98 
                      +DlG GtG+ +  + +e+++  a+v+++D     +e+Ar+++++ g  nv+  + d+++  ++  +   +++li+    l  ++d  +++e + 
       KOO22652.1  74 VDLGGGTGANLEMMGDEAIMsFAKVYLVDLCGPLLEVARKRCEERGWHNVQIVEDDATTwVPEEgYG--QVNLITFSYSLTMIPDWYAAIEHAA 165
                      7*********99999966664899**************************************99888..6************************ PP

  Methyltransf_31  99 rvlkpggilliedprllaelpak 121
                       +l pgg + + d+ ++++ pa+
       KOO22652.1 166 ALLAPGGLIGTVDFYVARKHPAE 188
                      *********99999988888733 PP

>> Methyltransf_12  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.3   0.0   1.2e-11   3.1e-08       1      99 []      74     174 ..      74     174 .. 0.94

  Alignments for each domain:
  == domain 1  score: 34.3 bits;  conditional E-value: 1.2e-11
  Methyltransf_12   1 LeiGcGtGsllrallekl..pdieytgvDispsaiedakeklakrennnnnnvelealdlldldggssfDlvvasnvlhhlkdirevldnirkl 92 
                      +++G+GtG++l+++ ++   ++++++ vD+    +e a+++  +r+ +n++ ve +a+    ++g +++ l++ s  l  ++d+ ++++++++l
       KOO22652.1  74 VDLGGGTGANLEMMGDEAimSFAKVYLVDLCGPLLEVARKRCEERGWHNVQIVEDDATTWVPEEGYGQVNLITFSYSLTMIPDWYAAIEHAAAL 167
                      59***************99***************************99988888888888777777**************************** PP

  Methyltransf_12  93 LkpgGrl 99 
                      L+pgG +
       KOO22652.1 168 LAPGGLI 174
                      *****75 PP

>> PTS_IIA  PTS system, Lactose/Cellobiose specific IIA subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.6   1.8e-05     0.046       8      50 ..      24      67 ..      17      70 .. 0.85

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 1.8e-05
     PTS_IIA  8 lhaGeArslameAlkaakegdfeeaeellkeAeeel.keAhkaq 50
                 haGe+ ++ +eA+ +a++gd+++ ++ l +++eel +eA+ a+
  KOO22652.1 24 RHAGESHKERLEAFYQAQAGDYDAFRKRLLQGREELmAEAKAAH 67
                59******************************998625677666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (310 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       391  (0.0218082); expected 358.6 (0.02)
Passed bias filter:                      376  (0.0209716); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.42u 0.23s 00:00:00.65 Elapsed: 00:00:00.36
# Mc/sec: 2567.32
//
Query:       KOO22653.1  [L=230]
Description: hypothetical protein Ctob_000581 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (230 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       546  (0.0304535); expected 358.6 (0.02)
Passed bias filter:                      352  (0.019633); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.22s 00:00:00.60 Elapsed: 00:00:00.36
# Mc/sec: 1919.76
//
Query:       KOO22654.1  [L=1033]
Description: pkd domain-containing protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    4.8e-16   58.5  89.1     0.0038   17.2   0.6   12.5 13  SBBP            Beta-propeller repeat
    7.6e-06   26.2   0.6         18    5.6   0.0    7.6 10  DUF3712         Protein of unknown function (DUF3712)
      0.005   16.3   9.5     0.0071   15.8   9.5    1.1  1  Rab5-bind       Rabaptin-like protein
  ------ inclusion threshold ------
      0.096   11.8   2.8       0.13   11.3   2.8    1.2  1  DUF3086         Protein of unknown function (DUF3086)
       0.13   12.1   6.2       0.23   11.3   6.2    1.3  1  Phage_GP20      Phage minor structural protein GP20
        8.5    6.7   7.7         27    5.1   6.5    2.1  2  DUF5082         Domain of unknown function (DUF5082)


Domain annotation for each model (and alignments):
>> SBBP  Beta-propeller repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   1.1       1.4   4.1e+03      17      31 ..       2      16 ..       2      16 .. 0.87
   2 !    9.3   0.9   0.00038       1.1       1      31 [.      48      77 ..      48      77 .. 0.97
   3 !   17.2   0.6   1.3e-06    0.0038       1      30 [.     109     137 ..     109     137 .. 0.96
   4 !    9.7   3.7   0.00028      0.83       1      31 [.     172     201 ..     172     201 .. 0.93
   5 !   16.9   0.4   1.6e-06    0.0047       2      31 ..     234     262 ..     233     262 .. 0.90
   6 ?    3.8   0.4      0.02        58       1      30 [.     294     322 ..     294     322 .. 0.83
   7 ?   -1.0   0.0      0.63   1.9e+03       2      22 ..     356     375 ..     355     376 .. 0.77
   8 !   14.8   0.4   7.2e-06     0.021       1      31 [.     420     449 ..     420     452 .. 0.95
   9 !    8.0   2.1   0.00096       2.9       1      30 [.     486     514 ..     486     514 .. 0.96
  10 !    8.5   0.7   0.00066         2       2      30 ..     548     575 ..     547     576 .. 0.87
  11 !   15.7   0.3   3.8e-06     0.011       1      31 [.     608     637 ..     608     641 .. 0.95
  12 ?    1.0   1.5      0.14   4.3e+02       2      30 ..     670     700 ..     669     700 .. 0.80
  13 !   10.5   2.3   0.00015      0.46       1      30 [.     733     761 ..     733     761 .. 0.90

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 1.4
        SBBP 17 gIavDsnGNiYvtGs 31
                gIavD  + + vtG+
  KOO22654.1  2 GIAVDGASGAIVTGY 16
                8****9999888886 PP

  == domain 2  score: 9.3 bits;  conditional E-value: 0.00038
        SBBP  1 qWstqlGgpgastygngIavDsnGNiYvtGs 31
                +W  q Gg+ + ++g gIa D+ G + vtG+
  KOO22654.1 48 DWAVQAGGTLK-DQGLGIAGDDAGGALVTGY 77
                599********.******************8 PP

  == domain 3  score: 17.2 bits;  conditional E-value: 1.3e-06
        SBBP   1 qWstqlGgpgastygngIavDsnGNiYvtG 30 
                 +Ws q Gg    ++g+gIa D  G ++vtG
  KOO22654.1 109 DWSVQAGGVAR-DQGSGIAHDGAGGAFVTG 137
                 5******9999.*****************9 PP

  == domain 4  score: 9.7 bits;  conditional E-value: 0.00028
        SBBP   1 qWstqlGgpgastygngIavDsnGNiYvtGs 31 
                 +W  q Gg+   ++g+gIa D  G + vtG+
  KOO22654.1 172 DWAVQAGGTAI-DEGYGIAYDGTGGALVTGT 201
                 59999998888.******************7 PP

  == domain 5  score: 16.9 bits;  conditional E-value: 1.6e-06
        SBBP   2 WstqlGgpgastygngIavDsnGNiYvtGs 31 
                 W  q+Gg+   ++g++Ia D  G ++vtG+
  KOO22654.1 234 WAVQVGGTAE-VKGSSIAHDGVGGAFVTGY 262
                 9999996666.******************8 PP

  == domain 6  score: 3.8 bits;  conditional E-value: 0.02
        SBBP   1 qWstqlGgpgastygngIavDsnGNiYvtG 30 
                 +W  qlGg+   ++gngIa    G + vtG
  KOO22654.1 294 DWAVQLGGTAE-VKGNGIARYGAGGALVTG 322
                 5999***7766.*******88888877777 PP

  == domain 7  score: -1.0 bits;  conditional E-value: 0.63
        SBBP   2 WstqlGgpgastygngIavDs 22 
                 W  q Gg +  + g+gIa D 
  KOO22654.1 356 WAVQAGGMSM-VRGQGIAHDG 375
                 7777777766.789****996 PP

  == domain 8  score: 14.8 bits;  conditional E-value: 7.2e-06
        SBBP   1 qWstqlGgpgastygngIavDsnGNiYvtGs 31 
                 +W  q Gg+ + ++g gIa Ds G + vtG+
  KOO22654.1 420 DWAVQAGGTLD-DTGLGIAHDSAGGALVTGT 449
                 599********.77****************8 PP

  == domain 9  score: 8.0 bits;  conditional E-value: 0.00096
        SBBP   1 qWstqlGgpgastygngIavDsnGNiYvtG 30 
                 +W  q Gg++  + ++gIa D  G + vtG
  KOO22654.1 486 DWAIQAGGTSI-DHVSGIAYDGVGGALVTG 514
                 599********.99***************9 PP

  == domain 10  score: 8.5 bits;  conditional E-value: 0.00066
        SBBP   2 WstqlGgpgastygngIavDsnGNiYvtG 30 
                 W  q Gg ++s++g gIa D  G + vtG
  KOO22654.1 548 WAVQAGG-SYSDEGLGIAYDGAGGALVTG 575
                 8889995.555*****************9 PP

  == domain 11  score: 15.7 bits;  conditional E-value: 3.8e-06
        SBBP   1 qWstqlGgpgastygngIavDsnGNiYvtGs 31 
                 +W  q Gg  + ++g+gIa D  G + vtG+
  KOO22654.1 608 DWAVQAGGDLD-DKGHGIAHDGAGGSLVTGY 637
                 5999*******.99****************8 PP

  == domain 12  score: 1.0 bits;  conditional E-value: 0.14
        SBBP   2 WstqlG..gpgastygngIavDsnGNiYvtG 30 
                 W  q G   +ga +  ++Ia D  G + vtG
  KOO22654.1 670 WAVQAGgvRGGAALGSYDIAYDGAGGALVTG 700
                 77777877444447789*************9 PP

  == domain 13  score: 10.5 bits;  conditional E-value: 0.00015
        SBBP   1 qWstqlGgpgastygngIavDsnGNiYvtG 30 
                 +W  q Gg+ + ++g+gIa D  G +  tG
  KOO22654.1 733 DWAIQAGGTAN-DIGYGIAHDGAGGALATG 761
                 5999***9999.77**********998887 PP

>> DUF3712  Protein of unknown function (DUF3712)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.9   0.0     0.042   1.3e+02      28      62 ..      28      62 ..      20      66 .. 0.85
   2 ?    0.0   0.0      0.32   9.6e+02      26      53 ..      87     114 ..      83     119 .. 0.91
   3 ?   -3.3   0.0       3.5     1e+04      31      53 ..     155     177 ..     146     181 .. 0.78
   4 ?    2.8   0.0     0.045   1.4e+02      27      53 ..     212     238 ..     207     251 .. 0.83
   5 ?   -2.1   0.0       1.5   4.5e+03      28      52 ..     274     298 ..     270     307 .. 0.83
   6 ?    0.3   0.0      0.27   8.1e+02      26      54 ..     398     426 ..     391     437 .. 0.86
   7 !    5.6   0.0    0.0059        18      26      53 ..     525     552 ..     522     556 .. 0.92
   8 ?    1.3   0.0      0.13   3.9e+02      29      53 ..     589     613 ..     584     619 .. 0.90
   9 ?   -2.2   0.0       1.5   4.6e+03      26      53 ..     647     674 ..     644     679 .. 0.90
  10 ?   -3.7   0.0       4.5   1.4e+04      28      54 ..     774     800 ..     771     806 .. 0.81

  Alignments for each domain:
  == domain 1  score: 2.9 bits;  conditional E-value: 0.042
     DUF3712 28 itdvdaftkflealvlseefklsvkGkttlklggl 62
                ++++++++ f+  ++ s +++++v++  tlk +gl
  KOO22654.1 28 LASRSNYDAFVMHVTASGTIDWAVQAGGTLKDQGL 62
                788999*******************9877776666 PP

  == domain 2  score: 0.0 bits;  conditional E-value: 0.32
     DUF3712  26 lditdvdaftkflealvlseefklsvkG 53 
                 + +t++++++ f+  +  s  +++sv++
  KOO22654.1  87 TSLTSRGDYDVFVMHVAASGAIDWSVQA 114
                 67899*********************97 PP

  == domain 3  score: -3.3 bits;  conditional E-value: 3.5
     DUF3712  31 vdaftkflealvlseefklsvkG 53 
                  ++++ f+  +++s  ++++v++
  KOO22654.1 155 DGEYDIFVMHVIKSGAIDWAVQA 177
                 4589999************9987 PP

  == domain 4  score: 2.8 bits;  conditional E-value: 0.045
     DUF3712  27 ditdvdaftkflealvlseefklsvkG 53 
                  +t++++f+ f+  ++ s  ++++v+ 
  KOO22654.1 212 SLTSRGTFDAFVMHVTASGAIDWAVQV 238
                 6899*******************9985 PP

  == domain 5  score: -2.1 bits;  conditional E-value: 1.5
     DUF3712  28 itdvdaftkflealvlseefklsvk 52 
                 + ++++ + f+  l+ s +++++v+
  KOO22654.1 274 LHSQGHSDAFVMHLTASGTIDWAVQ 298
                 667888899*************996 PP

  == domain 6  score: 0.3 bits;  conditional E-value: 0.27
     DUF3712  26 lditdvdaftkflealvlseefklsvkGk 54 
                 + + +++a++ f+  + +s  ++++v++ 
  KOO22654.1 398 TSLRSRGALDVFVMHVAKSGAIDWAVQAG 426
                 6678999*******************985 PP

  == domain 7  score: 5.6 bits;  conditional E-value: 0.0059
     DUF3712  26 lditdvdaftkflealvlseefklsvkG 53 
                 + +t++++f+ f+  ++ s +++++v++
  KOO22654.1 525 TSLTSRGEFDVFVMHVTASGTIDWAVQA 552
                 6799*********************986 PP

  == domain 8  score: 1.3 bits;  conditional E-value: 0.13
     DUF3712  29 tdvdaftkflealvlseefklsvkG 53 
                 ++++ f+ f+  +++s  ++++v++
  KOO22654.1 589 ASRGVFDVFVMHVTKSGAIDWAVQA 613
                 68899******************97 PP

  == domain 9  score: -2.2 bits;  conditional E-value: 1.5
     DUF3712  26 lditdvdaftkflealvlseefklsvkG 53 
                 + +t+++ ++ f+  +  s  ++++v++
  KOO22654.1 647 TSLTSRGMYDAFVMHVAASGAIDWAVQA 674
                 67899999*****************986 PP

  == domain 10  score: -3.7 bits;  conditional E-value: 4.5
     DUF3712  28 itdvdaftkflealvlseefklsvkGk 54 
                 +++++  + f+  ++ s  ++++v++ 
  KOO22654.1 774 LLSRGMVDAFVMHVTASGAIDVAVQAG 800
                 677788899999999999999999875 PP

>> Rab5-bind  Rabaptin-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   9.5   2.4e-06    0.0071      14     121 ..     916    1027 ..     911    1032 .. 0.89

  Alignments for each domain:
  == domain 1  score: 15.8 bits;  conditional E-value: 2.4e-06
   Rab5-bind   14 iqeqEaelrdqvkklqellrraneqLekerkdkkeLedslkelseets..kqv..selakrvkksEllleeLqqafskakrniqeqlavlvksreqv 106 
                  i  + ++l d+ k l e lr a+ +L ++ ++ k+Le +l+e+ ++ s  k++  +e+a+ + ++E  l+  + a+  + + +++ la + ++r+  
  KOO22654.1  916 IEAERRRLADEKKSLEEALRTAQRELGQATEHVKNLEAELREALNDNSraKRLwrAEVADTTSQAEIELTRTERAHATEVEALRRALAQASHERDDY 1012
                  5667799**********************************98877652245544688999************************************ PP

   Rab5-bind  107 edelvrLqkdyesLl 121 
                  + +l++L   +e+L 
  KOO22654.1 1013 HGQLMQLRGAHEQLH 1027
                  *******99999886 PP

>> DUF3086  Protein of unknown function (DUF3086)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   2.8   4.5e-05      0.13      35     146 ..     914    1032 ..     891    1033 .] 0.69

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 4.5e-05
     DUF3086   35 tsfaGvsqdlairvqgfkdyLvgslqdLaaaaeqlelvakekav......kpePadekeeeekeeeeeaepqfaeqefkeeakkirklldqy.rekP 124 
                  ++       la   +++++ L ++ ++L +a+e+++  ++e  +      +++ + ++e +++++++e e + +e++++ e + +r++l q  +e+ 
  KOO22654.1  914 HTIEAERRRLADEKKSLEEALRTAQRELGQATEHVKNLEAELREalndnsRAKRLWRAEVADTTSQAEIELTRTERAHATEVEALRRALAQAsHERD 1010
                  55556667788888999999999999**9999988655555444233222112222233333344444444578899999999****9998725678 PP

     DUF3086  125 dyygppWqlrrtlepihaerve 146 
                  dy+g+  qlr + e+ ha++v+
  KOO22654.1 1011 DYHGQLMQLRGAHEQLHANKVS 1032
                  9******************996 PP

>> Phage_GP20  Phage minor structural protein GP20
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   6.2   7.6e-05      0.23      17     105 ..     917    1003 ..     899    1029 .. 0.82

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 7.6e-05
  Phage_GP20   17 kakldeveeerdtlkeqlkdrdkqLedLkkkakdneeLqkqieelqaknkkakaeyeakiadlkldnaielaLke.akaknekavkalld 105 
                  +a+  ++ +e+++l+e l +++ +L +  +    +++L++++ e  ++n +ak    a++ad++ ++ iel+ +e a a + +a++  l+
  KOO22654.1  917 EAERRRLADEKKSLEEALRTAQRELGQATEH---VKNLEAELREALNDNSRAKRLWRAEVADTTSQAEIELTRTErAHATEVEALRRALA 1003
                  56677999**************998877555...99**********************************87544266777777766666 PP

>> DUF5082  Domain of unknown function (DUF5082)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.1   6.5    0.0091        27      13      95 ..     917    1004 ..     907    1019 .. 0.82
   2 ?    3.2   0.1     0.033        99       4      41 ..     994    1031 ..     991    1033 .] 0.90

  Alignments for each domain:
  == domain 1  score: 5.1 bits;  conditional E-value: 0.0091
     DUF5082   13 aelrseiaaleekI.erLkeaktklsdekeslkqkkkklekplnsse....sWkGkeennydgirsnlessyqtyvdkldelidaiee 95  
                  +  r ++a+  + + e L++a ++l ++ e++k+ + +l++ ln+++     W+ + +++ ++++ +l    ++  +++++l +a+ +
  KOO22654.1  917 EAERRRLADEKKSLeEALRTAQRELGQATEHVKNLEAELREALNDNSrakrLWRAEVADTTSQAEIELTRTERAHATEVEALRRALAQ 1004
                  55555555555555146*****************************999999**************9999999999999998888765 PP

  == domain 2  score: 3.2 bits;  conditional E-value: 0.033
     DUF5082    4 kisklqaqiaelrseiaaleekIerLkeaktklsdeke 41  
                  + ++l+++ a++++e++++  ++  L+ a ++l + k 
  KOO22654.1  994 EVEALRRALAQASHERDDYHGQLMQLRGAHEQLHANKV 1031
                  6678999*************************999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1033 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1093  (0.0609627); expected 358.6 (0.02)
Passed bias filter:                      564  (0.0314574); expected 358.6 (0.02)
Passed Vit filter:                        97  (0.00541023); expected 17.9 (0.001)
Passed Fwd filter:                        14  (0.000780858); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.88u 0.33s 00:00:01.21 Elapsed: 00:00:00.60
# Mc/sec: 5201.13
//
Query:       KOO22655.1  [L=112]
Description: hypothetical protein Ctob_000588 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (112 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       229  (0.0127726); expected 358.6 (0.02)
Passed bias filter:                      193  (0.0107647); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.24s 00:00:00.59 Elapsed: 00:00:00.40
# Mc/sec: 845.73
//
Query:       KOO22656.1  [L=1000]
Description: hypothetical protein Ctob_000594 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    2.7e-46  151.7  25.0    0.00017   21.4   0.0   12.8 13  LRR_6        Leucine Rich repeat
      8e-27   94.4   0.0    1.5e-26   93.5   0.0    1.4  1  PhzC-PhzF    Phenazine biosynthesis-like protein
     0.0004   20.5   0.0         14    6.7   0.0    5.7  5  LRR_1        Leucine Rich Repeat
    0.00083   19.7   2.1         15    6.2   0.0    5.4  6  LRR_4        Leucine Rich repeats (2 copies)
  ------ inclusion threshold ------
       0.22   11.3   8.5         28    4.6   0.0    5.8  5  LRR_8        Leucine rich repeat
       0.34   11.0   2.9         16    5.6   0.7    3.7  3  EIF_2_alpha  Eukaryotic translation initiation factor 2 alpha
        1.8    9.0  19.3        8.7    6.8   0.7    6.2  8  HOASN        Haem-oxygenase-associated N-terminal helices
        7.1    6.7  32.6         13    5.8   0.1    8.2  9  CbiG_N       Cobalamin synthesis G N-terminal


Domain annotation for each model (and alignments):
>> LRR_6  Leucine Rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.4   0.0   7.5e-08   0.00017       5      23 ..     668     686 ..     668     687 .. 0.95
   2 !   12.4   0.0   5.6e-05      0.12       7      24 .]     698     715 ..     697     715 .. 0.92
   3 !   17.8   0.0   1.1e-06    0.0024       3      24 .]     722     743 ..     720     743 .. 0.90
   4 !   11.2   0.0   0.00014      0.31       2      23 ..     749     770 ..     748     771 .. 0.91
   5 ?    3.6   0.3     0.037        82      15      24 .]     772     781 ..     771     781 .. 0.92
   6 !   20.9   0.0     1e-07   0.00023       2      24 .]     787     809 ..     786     809 .. 0.93
   7 !   14.5   0.0   1.2e-05     0.027       2      24 .]     815     837 ..     814     837 .. 0.93
   8 !    5.4   0.0    0.0097        22      13      24 .]     854     865 ..     843     865 .. 0.83
   9 !   16.2   0.0   3.4e-06    0.0077       2      24 .]     871     893 ..     870     893 .. 0.91
  10 !   16.9   0.1     2e-06    0.0045       2      24 .]     899     921 ..     898     921 .. 0.93
  11 ?   -1.7   0.0       1.9   4.2e+03       3      14 ..     928     939 ..     926     939 .. 0.81
  12 !    7.0   0.1    0.0031         7      12      24 .]     946     959 ..     944     959 .. 0.89
  13 !   10.8   0.0   0.00019      0.42       2      19 ..     965     982 ..     964     986 .. 0.88

  Alignments for each domain:
  == domain 1  score: 21.4 bits;  conditional E-value: 7.5e-08
       LRR_6   5 LteLdLsgNdIgDeGaeaL 23 
                 L++LdLs N+Ig eGa++L
  KOO22656.1 668 LRTLDLSRNNIGPEGASSL 686
                 89***************99 PP

  == domain 2  score: 12.4 bits;  conditional E-value: 5.6e-05
       LRR_6   7 eLdLsgNdIgDeGaeaLa 24 
                 +L L +N++gDeGa+ +a
  KOO22656.1 698 TLVLGHNQFGDEGAITIA 715
                 689***********9987 PP

  == domain 3  score: 17.8 bits;  conditional E-value: 1.1e-06
       LRR_6   3 thLteLdLsgNdIgDeGaeaLa 24 
                   +t+L L +N IgDeGa+a+a
  KOO22656.1 722 AVVTSLYLGYNSIGDEGAIAIA 743
                 5689****************98 PP

  == domain 4  score: 11.2 bits;  conditional E-value: 0.00014
       LRR_6   2 nthLteLdLsgNdIgDeGaeaL 23 
                 n  Lt+L+L +N I  eGa+a+
  KOO22656.1 749 NAVLTTLNLGYNSIVVEGAKAI 770
                 667******************9 PP

  == domain 5  score: 3.6 bits;  conditional E-value: 0.037
       LRR_6  15 IgDeGaeaLa 24 
                 IgD+Ga+a+a
  KOO22656.1 772 IGDKGAIAIA 781
                 9*******98 PP

  == domain 6  score: 20.9 bits;  conditional E-value: 1e-07
       LRR_6   2 nthLteLdLsgNdIgDeGaeaLa 24 
                 n  Lt+LdL +N+Ig eGa+a+a
  KOO22656.1 787 NAVLTTLDLIHNNIGPEGAKAIA 809
                 667******************98 PP

  == domain 7  score: 14.5 bits;  conditional E-value: 1.2e-05
       LRR_6   2 nthLteLdLsgNdIgDeGaeaLa 24 
                 n  Lt+L L  N+I  eGa+a+a
  KOO22656.1 815 NAVLTTLRLDENKIRAEGAKAIA 837
                 667******************98 PP

  == domain 8  score: 5.4 bits;  conditional E-value: 0.0097
       LRR_6  13 NdIgDeGaeaLa 24 
                 N IgDeGa+a++
  KOO22656.1 854 NYIGDEGAIAIS 865
                 66********96 PP

  == domain 9  score: 16.2 bits;  conditional E-value: 3.4e-06
       LRR_6   2 nthLteLdLsgNdIgDeGaeaLa 24 
                 n  Lt++ L +N+IgDeGa+a+a
  KOO22656.1 871 NAVLTTVGLISNKIGDEGAKAIA 893
                 66799****************98 PP

  == domain 10  score: 16.9 bits;  conditional E-value: 2e-06
       LRR_6   2 nthLteLdLsgNdIgDeGaeaLa 24 
                 n  Lt+++L+ N I+D+Ga+a+a
  KOO22656.1 899 NAVLTSVNLQVNSISDDGAIAIA 921
                 667******************98 PP

  == domain 11  score: -1.7 bits;  conditional E-value: 1.9
       LRR_6   3 thLteLdLsgNd 14 
                   +t+L+L  N+
  KOO22656.1 928 AVVTTLSLGRNG 939
                 5689*****995 PP

  == domain 12  score: 7.0 bits;  conditional E-value: 0.0031
       LRR_6  12 gNd.IgDeGaeaLa 24 
                 g+d IgD+Ga+a+a
  KOO22656.1 946 GCDnIGDKGAKAFA 959
                 7888********98 PP

  == domain 13  score: 10.8 bits;  conditional E-value: 0.00019
       LRR_6   2 nthLteLdLsgNdIgDeG 19 
                 n  Lt+LdL +NdIg +G
  KOO22656.1 965 NAVLTKLDLEYNDIGKAG 982
                 667************998 PP

>> PhzC-PhzF  Phenazine biosynthesis-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   93.5   0.0   6.9e-30   1.5e-26      21     231 ..     103     328 ..      99     335 .. 0.76

  Alignments for each domain:
  == domain 1  score: 93.5 bits;  conditional E-value: 6.9e-30
                 TCS-HHHHHHHHHHHTSSEEEEEE--SSTTSSEEEEEE-SSSEES--HHHHHHHHHHHHHHCT-...S-SCEEEEEETTEEEEE.EEEEETCEECCEEE CS
   PhzC-PhzF  21 delddeelqsiAaelnlseTaFllkpsdekarfrlRyFTPvaEvdlcGHatlasahalaekglv...asaetveletkaGilpvkslkekddgeellie 116
                  +l+ +++qsiAae+++seT+F+l+psde++ + +R+F+P+ E++++GH+ +++a ala +g       ++tv +e+kaG + + ++ +++ g+     
  KOO22656.1 103 KQLTAAQMQSIAAEFGYSETTFVLPPSDEANTAHVRIFSPTYEMPFAGHPNVGTATALAWRGNFmgrPVGHTVRFEEKAGLVLL-NILHDAAGQPTGAM 200
                 47999******************************************************99988766789*************9.67777777777777 PP

                 EE-SEEEEEE-HHHHHHHHHHCCTSGG....-TTS-BEEEESSSEEEEEEBSTCCHHHH----H.........HHHHHHCT-EEEEEEEETTTSSCCEE CS
   PhzC-PhzF 117 lkfPvikteevssedlallakllklaa....qkalpiavkstglekvivplsseeavaelspdl.........aeeikkcpkkgvivtaaaeagskkdf 202
                 l +P      v s  ++++a++  l+       + p+ v++tgl  ++ + +s  a+a+              a+   k+  +  + t++ e +     
  KOO22656.1 201 LTAPEPFSLPVPSLPVKDVAAAVSLEPselvVSNHPPLVATTGLPFIVAECASLDALARSRGAPaafeelcalAAVPPKVLLYTHTGTEKGEGAGGVVH 299
                 77777655555555555555555544444588899*********************9988766544555433322222222233333334333344445 PP

                 EEEEEEGGGTEEEESS-HHHHHHHHHHHH CS
   PhzC-PhzF 203 hsRmFaPklGivEDpvtGsAsgaLaayls 231
                 + R+   + +  ED+ tG+A++ La+ l+
  KOO22656.1 300 QIRARMHRANGTEDAGTGAANACLAGVLA 328
                 566666788899************99876 PP

>> LRR_1  Leucine Rich Repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.7   0.0    0.0061        14       2      16 ..     668     682 ..     667     690 .. 0.76
   2 ?   -0.3   0.0       1.2   2.8e+03       3      14 ..     725     736 ..     724     742 .. 0.81
   3 ?    2.6   0.0      0.14   3.1e+02       2      12 ..     752     762 ..     751     776 .. 0.79
   4 ?   -0.7   0.0       1.7   3.8e+03       2      12 ..     790     800 ..     790     810 .. 0.79
   5 ?    1.5   0.0      0.31     7e+02       2      12 ..     968     978 ..     968     987 .. 0.86

  Alignments for each domain:
  == domain 1  score: 6.7 bits;  conditional E-value: 0.0061
       LRR_1   2 LrhLdLsnnpllglp 16 
                 Lr+LdLs+n+++  +
  KOO22656.1 668 LRTLDLSRNNIGPEG 682
                 9********985444 PP

  == domain 2  score: -0.3 bits;  conditional E-value: 1.2
       LRR_1   3 rhLdLsnnpllg 14 
                 ++L+L++n++++
  KOO22656.1 725 TSLYLGYNSIGD 736
                 58*******965 PP

  == domain 3  score: 2.6 bits;  conditional E-value: 0.14
       LRR_1   2 LrhLdLsnnpl 12 
                 L++L+L++n++
  KOO22656.1 752 LTTLNLGYNSI 762
                 89*******98 PP

  == domain 4  score: -0.7 bits;  conditional E-value: 1.7
       LRR_1   2 LrhLdLsnnpl 12 
                 L++LdL +n++
  KOO22656.1 790 LTTLDLIHNNI 800
                 899**988876 PP

  == domain 5  score: 1.5 bits;  conditional E-value: 0.31
       LRR_1   2 LrhLdLsnnpl 12 
                 L++LdL++n +
  KOO22656.1 968 LTKLDLEYNDI 978
                 899******97 PP

>> LRR_4  Leucine Rich repeats (2 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.2   0.0    0.0068        15      24      34 ..     667     677 ..     658     684 .. 0.67
   2 ?   -3.4   0.0       7.1   1.6e+04       5      15 ..     698     708 ..     698     713 .. 0.78
   3 ?    4.7   0.0      0.02        45       4      33 ..     725     760 ..     724     765 .. 0.73
   4 ?    2.1   0.2      0.13   2.9e+02       3      14 ..     790     801 ..     789     832 .. 0.56
   5 ?   -2.6   0.0       3.7   8.3e+03       3      15 ..     902     914 ..     899     921 .. 0.75
   6 ?   -0.7   0.0      0.98   2.2e+03       3      13 ..     968     978 ..     965     982 .. 0.59

  Alignments for each domain:
  == domain 1  score: 6.2 bits;  conditional E-value: 0.0068
                 T--EEE-.-S- CS
       LRR_4  24 nLkeLdLsgNn 34 
                  L++LdLs+Nn
  KOO22656.1 667 ALRTLDLSRNN 677
                 56666666652 PP

  == domain 2  score: -3.4 bits;  conditional E-value: 7.1
                 EEE--SS---E CS
       LRR_4   5 vLdLsnNqltd 15 
                 +L L++Nq  d
  KOO22656.1 698 TLVLGHNQFGD 708
                 68999999776 PP

  == domain 3  score: 4.7 bits;  conditional E-value: 0.02
                 -EEE--SS---E-S-HH.....H.-TT--EEE-.-S CS
       LRR_4   4 evLdLsnNqltdiplle.....k.lpnLkeLdLsgN 33 
                 ++L+L+ N + d + ++     k +  L++L+L  N
  KOO22656.1 725 TSLYLGYNSIGDEGAIAiaealKvNAVLTTLNLGYN 760
                 78999999*999999555565553444999999667 PP

  == domain 4  score: 2.1 bits;  conditional E-value: 0.13
                 --EEE--SS--- CS
       LRR_4   3 LevLdLsnNqlt 14 
                 L++LdL +N++ 
  KOO22656.1 790 LTTLDLIHNNIG 801
                 677777777776 PP

  == domain 5  score: -2.6 bits;  conditional E-value: 3.7
                 --EEE--SS---E CS
       LRR_4   3 LevLdLsnNqltd 15 
                 L++++L+ N ++d
  KOO22656.1 902 LTSVNLQVNSISD 914
                 6677777667765 PP

  == domain 6  score: -0.7 bits;  conditional E-value: 0.98
                 --EEE--SS-- CS
       LRR_4   3 LevLdLsnNql 13 
                 L++LdL  N +
  KOO22656.1 968 LTKLDLEYNDI 978
                 45555554444 PP

>> LRR_8  Leucine rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.6   0.0     0.012        28      50      61 .]     667     678 ..     661     679 .. 0.58
   2 ?    2.6   0.2     0.051   1.1e+02      24      37 ..     749     762 ..     723     764 .. 0.73
   3 ?    1.0   0.5      0.16   3.5e+02      27      37 ..     790     800 ..     781     828 .. 0.67
   4 ?   -4.1   0.0       6.5   1.5e+04       3      14 ..     902     913 ..     901     917 .. 0.69
   5 ?    1.1   0.0      0.15   3.4e+02      51      61 .]     968     978 ..     960     988 .. 0.64

  Alignments for each domain:
  == domain 1  score: 4.6 bits;  conditional E-value: 0.012
                 S-.EEE--SS-- CS
       LRR_8  50 sLrsLdLsgNrL 61 
                 +Lr LdLs+N++
  KOO22656.1 667 ALRTLDLSRNNI 678
                 455555555544 PP

  == domain 2  score: 2.6 bits;  conditional E-value: 0.051
                 -TT--EEE--SS-- CS
       LRR_8  24 lsnLkvLdLsnNll 37 
                 +  L++L+L++N++
  KOO22656.1 749 NAVLTTLNLGYNSI 762
                 45688888888887 PP

  == domain 3  score: 1.0 bits;  conditional E-value: 0.16
                 --EEE--SS-- CS
       LRR_8  27 LkvLdLsnNll 37 
                 L++LdL +N++
  KOO22656.1 790 LTTLDLIHNNI 800
                 67777777776 PP

  == domain 4  score: -4.1 bits;  conditional E-value: 6.5
                 -SEEE-TTS--S CS
       LRR_8   3 LtsLdLsnNrlt 14 
                 Lts++L+ N+++
  KOO22656.1 902 LTSVNLQVNSIS 913
                 677777777765 PP

  == domain 5  score: 1.1 bits;  conditional E-value: 0.15
                 -.EEE--SS-- CS
       LRR_8  51 LrsLdLsgNrL 61 
                 L++LdL++N++
  KOO22656.1 968 LTKLDLEYNDI 978
                 44444444443 PP

>> EIF_2_alpha  Eukaryotic translation initiation factor 2 alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.0      0.69   1.5e+03      46      81 ..     713     748 ..     707     765 .. 0.87
   2 ?    5.6   0.7    0.0072        16      35      81 ..     880     926 ..     777     940 .. 0.80
   3 ?   -0.7   0.0      0.65   1.5e+03      47      80 ..     958     991 ..     948     995 .. 0.85

  Alignments for each domain:
  == domain 1  score: -0.8 bits;  conditional E-value: 0.69
                  CTHHHHHHT-EEEEEEEEEEE-STTHHHHHHHHHHH CS
  EIF_2_alpha  46 iikkklkpqkvkiradieltcftkdGveaIkeaLka 81 
                  +i + lk+++v  + ++  ++++ +G  aI eaLk 
   KOO22656.1 713 TIAEALKVNAVVTSLYLGYNSIGDEGAIAIAEALKV 748
                  5788999999999999999***************94 PP

  == domain 2  score: 5.6 bits;  conditional E-value: 0.0072
                  S-TTTHHHHHHCTHHHHHHT-EEEEEEEEEEE-STTHHHHHHHHHHH CS
  EIF_2_alpha  35 ipeeveeaLveiikkklkpqkvkiradieltcftkdGveaIkeaLka 81 
                  i++++ ++  + i + lk+++v  +  +++++++ dG  aI eaLk 
   KOO22656.1 880 ISNKIGDEGAKAIAEALKVNAVLTSVNLQVNSISDDGAIAIAEALKV 926
                  55666666678899999999999999999999999999999999994 PP

  == domain 3  score: -0.7 bits;  conditional E-value: 0.65
                  THHHHHHT-EEEEEEEEEEE-STTHHHHHHHHHH CS
  EIF_2_alpha  47 ikkklkpqkvkiradieltcftkdGveaIkeaLk 80 
                    k lk+++v  + d+e + ++k G +a+++a k
   KOO22656.1 958 FAKALKVNAVLTKLDLEYNDIGKAGKKAVRDAVK 991
                  5678999999999999999999999999999988 PP

>> HOASN  Haem-oxygenase-associated N-terminal helices
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.0       2.2   4.8e+03      11      32 ..     675     696 ..     668     721 .. 0.73
   2 ?   -1.0   0.0       1.1   2.4e+03      17      34 ..     709     726 ..     696     734 .. 0.78
   3 ?    5.5   1.1      0.01        23      18      63 ..     738     784 ..     726     795 .. 0.84
   4 ?    0.7   0.1      0.32   7.1e+02      20      40 ..     778     798 ..     769     802 .. 0.81
   5 ?    6.8   0.7    0.0039       8.7      13      72 ..     799     859 ..     796     868 .. 0.80
   6 ?    2.9   0.7     0.065   1.5e+02      17      42 ..     887     912 ..     880     928 .. 0.81
   7 ?   -1.3   0.0       1.3     3e+03      18      33 ..     916     931 ..     908     937 .. 0.74
   8 ?    0.6   0.0      0.35   7.8e+02      17      42 ..     953     978 ..     943     991 .. 0.80

  Alignments for each domain:
  == domain 1  score: -2.0 bits;  conditional E-value: 2.2
                 HHT--SHHHHHHHHHTSTT--H CS
       HOASN  11 lqnlpieeaalladalkvgasl 32 
                 ++n+  e a  l +alkv+a  
  KOO22656.1 675 RNNIGPEGASSLGEALKVNAGG 696
                 4477777788888888888754 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 1.1
                 HHHHHHHHHTSTT--HHH CS
       HOASN  17 eeaalladalkvgasldq 34 
                 e a  +a+alkv+a +  
  KOO22656.1 709 EGAITIAEALKVNAVVTS 726
                 456679******998765 PP

  == domain 3  score: 5.5 bits;  conditional E-value: 0.01
                 HHHHHHHHTSTT--HHHHHHHHHHHHHHHHHHHT.T-HHHHHHHHHH CS
       HOASN  18 eaalladalkvgasldqidlalekllalaekGlk.Gdasayaayqal 63 
                  a  +a+alkv+a l  ++l  + ++   +k ++ Gd+ a a   al
  KOO22656.1 738 GAIAIAEALKVNAVLTTLNLGYNSIVVEGAKAIGiGDKGAIAIAEAL 784
                 45669********************9999999877999999877776 PP

  == domain 4  score: 0.7 bits;  conditional E-value: 0.32
                 HHHHHHTSTT--HHHHHHHHH CS
       HOASN  20 alladalkvgasldqidlale 40 
                   +a+alkv+a l  +dl  +
  KOO22656.1 778 IAIAEALKVNAVLTTLDLIHN 798
                 568********9999988665 PP

  == domain 5  score: 6.8 bits;  conditional E-value: 0.0039
                 T--SHHHHHHHHHTSTT--HHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHH.HHHHH--- CS
       HOASN  13 nlpieeaalladalkvgasldqidlalekllalaekGlkGdasayaayqall.lvlslsdd 72 
                 n+  e a+ +a+alkv+a l  + l  +k+ a  +k +    +  a    ll ++  ++d+
  KOO22656.1 799 NIGPEGAKAIAEALKVNAVLTTLRLDENKIRAEGAKAIAEALKVNAVVTTLLlYQNYIGDE 859
                 666688999***********************99999988888888776654155556665 PP

  == domain 6  score: 2.9 bits;  conditional E-value: 0.065
                 HHHHHHHHHTSTT--HHHHHHHHHHH CS
       HOASN  17 eeaalladalkvgasldqidlalekl 42 
                 e a+ +a+alkv+a l  ++l ++ +
  KOO22656.1 887 EGAKAIAEALKVNAVLTSVNLQVNSI 912
                 678899*********99999888776 PP

  == domain 7  score: -1.3 bits;  conditional E-value: 1.3
                 HHHHHHHHTSTT--HH CS
       HOASN  18 eaalladalkvgasld 33 
                  a  +a+alkv+a + 
  KOO22656.1 916 GAIAIAEALKVNAVVT 931
                 45669******99875 PP

  == domain 8  score: 0.6 bits;  conditional E-value: 0.35
                 HHHHHHHHHTSTT--HHHHHHHHHHH CS
       HOASN  17 eeaalladalkvgasldqidlalekl 42 
                 + a+  a+alkv+a l ++dl  + +
  KOO22656.1 953 KGAKAFAKALKVNAVLTKLDLEYNDI 978
                 668889***********999977766 PP

>> CbiG_N  Cobalamin synthesis G N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.8   0.1     0.006        13      52      79 ..     699     726 ..     697     728 .. 0.92
   2 ?    2.8   0.2     0.052   1.2e+02      59      79 ..     734     754 ..     726     756 .. 0.84
   3 ?    2.8   0.1     0.055   1.2e+02      58      79 ..     771     792 ..     758     794 .. 0.84
   4 ?    3.3   0.1     0.038        85      62      79 ..     803     820 ..     797     822 .. 0.86
   5 ?    3.5   0.3     0.032        71      63      79 ..     832     848 ..     829     849 .. 0.91
   6 ?    0.4   0.1      0.29   6.4e+02      61      80 ..     858     877 ..     856     879 .. 0.87
   7 ?    2.7   0.2     0.058   1.3e+02      60      79 ..     885     904 ..     877     907 .. 0.86
   8 ?    3.0   0.4     0.046     1e+02      62      80 ..     915     933 ..     910     934 .. 0.86
   9 ?   -1.8   0.0       1.5   3.3e+03      60      78 ..     951     969 ..     943     971 .. 0.82

  Alignments for each domain:
  == domain 1  score: 5.8 bits;  conditional E-value: 0.006
                 EE-TT.TTHHHHHHHHHHHTT-EE-XXX CS
      CbiG_N  52 llsGhlggAnelAeeiaallgaepviTt 79 
                 l+ Gh + ++e A  ia++l++++v+T+
  KOO22656.1 699 LVLGHNQFGDEGAITIAEALKVNAVVTS 726
                 6679**********************96 PP

  == domain 2  score: 2.8 bits;  conditional E-value: 0.052
                 THHHHHHHHHHHTT-EE-XXX CS
      CbiG_N  59 gAnelAeeiaallgaepviTt 79 
                  ++e A  ia++l++++v+Tt
  KOO22656.1 734 IGDEGAIAIAEALKVNAVLTT 754
                 5788899*************9 PP

  == domain 3  score: 2.8 bits;  conditional E-value: 0.055
                 TTHHHHHHHHHHHTT-EE-XXX CS
      CbiG_N  58 ggAnelAeeiaallgaepviTt 79 
                 g +++ A  ia++l++++v+Tt
  KOO22656.1 771 GIGDKGAIAIAEALKVNAVLTT 792
                 55788899*************9 PP

  == domain 4  score: 3.3 bits;  conditional E-value: 0.038
                 HHHHHHHHHTT-EE-XXX CS
      CbiG_N  62 elAeeiaallgaepviTt 79 
                 e A+ ia++l++++v+Tt
  KOO22656.1 803 EGAKAIAEALKVNAVLTT 820
                 6799*************9 PP

  == domain 5  score: 3.5 bits;  conditional E-value: 0.032
                 HHHHHHHHTT-EE-XXX CS
      CbiG_N  63 lAeeiaallgaepviTt 79 
                  A+ ia++l++++v+Tt
  KOO22656.1 832 GAKAIAEALKVNAVVTT 848
                 599*************9 PP

  == domain 6  score: 0.4 bits;  conditional E-value: 0.29
                 HHHHHHHHHHTT-EE-XXXX CS
      CbiG_N  61 nelAeeiaallgaepviTta 80 
                 +e A  i+++l++++v+Tt 
  KOO22656.1 858 DEGAIAISEVLKVNAVLTTV 877
                 667889************95 PP

  == domain 7  score: 2.7 bits;  conditional E-value: 0.058
                 HHHHHHHHHHHTT-EE-XXX CS
      CbiG_N  60 AnelAeeiaallgaepviTt 79 
                 ++e A+ ia++l++++v+T+
  KOO22656.1 885 GDEGAKAIAEALKVNAVLTS 904
                 6889**************97 PP

  == domain 8  score: 3.0 bits;  conditional E-value: 0.046
                 HHHHHHHHHTT-EE-XXXX CS
      CbiG_N  62 elAeeiaallgaepviTta 80 
                 + A  ia++l++++v+Tt 
  KOO22656.1 915 DGAIAIAEALKVNAVVTTL 933
                 66889************95 PP

  == domain 9  score: -1.8 bits;  conditional E-value: 1.5
                 HHHHHHHHHHHTT-EE-XX CS
      CbiG_N  60 AnelAeeiaallgaepviT 78 
                 +++ A+  a++l++++v+T
  KOO22656.1 951 GDKGAKAFAKALKVNAVLT 969
                 67789999*********99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1000 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       418  (0.0233142); expected 358.6 (0.02)
Passed bias filter:                      322  (0.0179597); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.68u 0.30s 00:00:00.98 Elapsed: 00:00:00.43
# Mc/sec: 6944.07
//
Query:       KOO22657.1  [L=96]
Description: hypothetical protein Ctob_000595, partial [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
     0.0065   16.5   0.6      0.008   16.3   0.6    1.1  1  DivIVA         DivIVA protein


Domain annotation for each model (and alignments):
>> DivIVA  DivIVA protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.6   4.4e-07     0.008      31      93 ..       7      72 ..       4      83 .. 0.77

  Alignments for each domain:
  == domain 1  score: 16.3 bits;  conditional E-value: 4.4e-07
                HHHHHHHHHHHHHHHHHHHCCCC...TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
      DivIVA 31 akdyeallkeneelkekvkelee...klkeykeleetLkktlvvaqetaeevkanakkeaeliike 93
                 +++ea+l++ +el + v   ++   ++  yk   ++L   +++aq++ae + ++a++ ae   +e
  KOO22657.1  7 GEEFEAVLQQASELPAAVPSPQQsasEVRVYKRGLRALLGGMMLAQKAAEAIAEAAAEAAEAAEAE 72
                579999999999999999666550005555666666666789****************99987665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (96 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1007  (0.056166); expected 358.6 (0.02)
Passed bias filter:                      547  (0.0305092); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.24s 00:00:00.65 Elapsed: 00:00:00.42
# Mc/sec: 686.60
//
Query:       KOO22658.1  [L=651]
Description: hypothetical protein Ctob_000590 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      1e-20   74.2   0.0    4.1e-09   36.9   0.0    2.3  2  PH        PH domain
     0.0031   17.9   0.9        1.2    9.5   0.1    3.1  3  PH_11     Pleckstrin homology domain
  ------ inclusion threshold ------
      0.024   14.8   0.3      0.047   13.9   0.3    1.4  1  ATG16     Autophagy protein 16 (ATG16)


Domain annotation for each model (and alignments):
>> PH  PH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.2   0.0   2.3e-12   1.4e-08       2     104 ..      48     146 ..      47     147 .. 0.81
   2 !   36.9   0.0   6.8e-13   4.1e-09       1     104 [.     431     537 ..     431     538 .. 0.90

  Alignments for each domain:
  == domain 1  score: 35.2 bits;  conditional E-value: 2.3e-12
                 EEEEEEEEETSSSSC.SEEEEEEEEETTEEEEESST..TCTTESSEEEEEESTTEEEEEEECTTSSSSTSEEEEEESTSSSTEEEEEEESSHHHHHHHH CS
          PH   2 vkeGwLlkkgsgkkk.swkkrwfvLkdsellyyknd..ksekdkepkgsislsncevvevvatedpkrkfcfelriverngsrtyllqasseeerkeWi 97 
                  ++GwL+k++ +     w +rwf+L +++l+y ++   +    +  ++ ++  n+e v    ++++   + f++ ++  +g +t+l++a s+e r +W+
  KOO22658.1  48 LHQGWLMKQSRHGTVaHWNRRWFILIGGSLYYSRSAapSVADLHVFTELLEALNIELV----PSTAALMHAFRILLP--DG-HTLLFSAQSSEARLTWM 139
                 689**99888775558**********99999999995544455555555555555555....679*********999..99.9**************** PP

                 HHHHHHH CS
          PH  98 kaiqsai 104
                 + i+++i
  KOO22658.1 140 SFIEASI 146
                 *998765 PP

  == domain 2  score: 36.9 bits;  conditional E-value: 6.8e-13
                 EEEEEEEEEETSSSSC.SEEEEEEEEETTEEEEESSTTCTTESSEEEEEESTTEEEEEEECTTSSSSTSEEEEEESTSSS....TEEEEEEESSHHHHH CS
          PH   1 vvkeGwLlkkgsgkkk.swkkrwfvLkdsellyykndksekdkepkgsislsncevvevvatedpkrkfcfelriverng....srtyllqasseeerk 94 
                 v keG L+k ++g  + +w +r f L +s+l+y k++ ++   +pk + ++ +c++++   ++ ++r++++++ +++ +     s++++++a++  e+ 
  KOO22658.1 431 VLKEGVLTKLSKGGFTaNWNRRAFALIGSSLFYAKDR-EHLLNQPKLFAEVAGCVCSSWY-EAATNRNNTLAIQLPNLDDpdgdSEVLIMAADTVREKL 527
                 679******99999889********************.99****************9875.77**********777666655556************** PP

                 HHHHHHHHHH CS
          PH  95 eWikaiqsai 104
                 +Wi+ai +a 
  KOO22658.1 528 AWIEAITHAA 537
                 ******9886 PP

>> PH_11  Pleckstrin homology domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.5   0.1   0.00021       1.2       2      29 ..      50      80 ..      49      95 .. 0.85
   2 ?   -3.7   0.0       2.8   1.7e+04      84     101 ..     124     141 ..     120     143 .. 0.78
   3 !    5.6   0.1    0.0035        21      81     104 ..     512     535 ..     433     536 .. 0.91

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 0.00021
       PH_11  2 kGylkkkgsk....aWkrrwfavlkdgvLeyY 29
                +G+l+k++ +     W rrwf +l  g L y 
  KOO22658.1 50 QGWLMKQSRHgtvaHWNRRWF-ILIGGSLYYS 80
                79*******9**999******.8888888664 PP

  == domain 2  score: -3.7 bits;  conditional E-value: 2.8
       PH_11  84 ifflkgdsneeteeWvea 101
                 ++ ++++s e + +W+  
  KOO22658.1 124 TLLFSAQSSEARLTWMSF 141
                 566899999999999875 PP

  == domain 3  score: 5.6 bits;  conditional E-value: 0.0035
       PH_11  81 etkifflkgdsneeteeWvealke 104
                 + +++++++d+  e+ +W+ea+ +
  KOO22658.1 512 DSEVLIMAADTVREKLAWIEAITH 535
                 567899***************975 PP

>> ATG16  Autophagy protein 16 (ATG16)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.3   7.8e-06     0.047      69     125 ..     166     222 ..     128     235 .. 0.86

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 7.8e-06
       ATG16  69 nskqsakiqsleqklaqlreelaelyksrgelaqrllelneelqkleeklkedeerl 125
                 ++  + ++ + +++la + + la+++ + g+l++ +++l+e++++l+  l++++erl
  KOO22658.1 166 KAGGAVQLRAISSELADVHAALAAALLRSGTLQSDVKRLEETVEALRGALQAKDERL 222
                 455678899999******************************************998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (651 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       649  (0.0361983); expected 358.6 (0.02)
Passed bias filter:                      490  (0.02733); expected 358.6 (0.02)
Passed Vit filter:                        60  (0.00334653); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.64u 0.26s 00:00:00.90 Elapsed: 00:00:00.44
# Mc/sec: 4445.15
//
Query:       KOO22659.1  [L=1651]
Description: mitochondrial substrate carrier family protein, partial [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.5e-11   44.1   8.3    0.00023   21.0   0.7    4.7  3  Mito_carr  Mitochondrial carrier protein
  ------ inclusion threshold ------
      0.043   13.8   0.1        0.1   12.6   0.1    1.6  1  Barstar    Barstar (barnase inhibitor)
       0.34   10.9   5.0        4.6    7.3   0.3    3.1  2  DGF-1_C    Dispersed gene family protein 1 of Trypanosoma cru


Domain annotation for each model (and alignments):
>> Mito_carr  Mitochondrial carrier protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.0   0.7   3.9e-08   0.00023       6      60 ..     814     868 ..     810     928 .. 0.73
   2 !    4.9   0.2     0.004        24      10      36 ..     949    1020 ..     942    1094 .. 0.57
   3 !   18.7   0.1   2.1e-07    0.0012       5      94 ..    1106    1196 ..    1103    1199 .. 0.83

  Alignments for each domain:
  == domain 1  score: 21.0 bits;  conditional E-value: 3.9e-08
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSTTTSCSSHHHHHHHHHHHHH CS
   Mito_carr   6 lkellaGglagavatlvttPldvvKtrlqtqkksskksksaaildvlkkiykeeG 60 
                 ++  +aGgl+ a++  vt P+d++Ktr q++ k++k+   +++   l ++ ++e+
  KOO22659.1 814 ARLAIAGGLCSATTRAVTSPIDLIKTRRQAAIKTAKAPAGTPTQPSLNSTAQSEQ 868
                 56789*************************9999998887777777777777665 PP

  == domain 2  score: 4.9 bits;  conditional E-value: 0.004
                  HHHHHHHHHHHHHHHHHHHHHHHHHH.............................................C CS
   Mito_carr   10 laGglagavatlvttPldvvKtrlqt.............................................q 36  
                   a +l +++a+++  P+++++++++t                                              
  KOO22659.1  949 TACLLQAVAASVCSSPFETARVKIMTgsgapdapqnlvealdlvmrgdapaaraategagvattstklsltM 1020
                  55566778899999***********95555555555555555555555555555555555555555555441 PP

  == domain 3  score: 18.7 bits;  conditional E-value: 2.1e-07
                  HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSTTTSCSSHHHHHHHHHHHHHHHG....GGTTHHHHHHHHHHHHHHHHHHHHHHHHHHC CS
   Mito_carr    5 vlkellaGglagavatlvttPldvvKtrlqtqkksskksksaaildvlkkiykeeGlrg....lyrGllpnllrvapasalkfvlyetlkrlll 94  
                  ++ +l++G +ag +++lv +P d+v tr  + +   + +    +ld +    +++ +++    ly G+  ++l  a+   ++f l++ l++ll 
  KOO22659.1 1106 LVVSLISGIVAGFMGALVSHPADTVVTRCAARGFGRNWRA---ALDDVLAGAESDDVAAkasvLYAGVKQRCLSLAIIVTAQFILFDGLRTLLA 1196
                  5779**************************9999887755...555555555666666567779999999999999999999999999999885 PP

>> Barstar  Barstar (barnase inhibitor)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.1   1.7e-05       0.1      27      76 ..    1139    1216 ..    1136    1218 .. 0.81

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 1.7e-05
     Barstar   27 fGrNl.DALdDcLtd...............aegy..............viviegsaalrkalpeafetllevledaaeew 76  
                  fGrN+  ALdD+L++                  +               i+++g+  l +  +e+++ +l+v+ed+ +++
  KOO22659.1 1139 FGRNWrAALDDVLAGaesddvaakasvlyaG--VkqrclslaiivtaqFILFDGLRTLLAVSKEDLSLFLDVFEDRLDFY 1216
                  9****447*********98888776666550..155566666666666***************************98876 PP

>> DGF-1_C  Dispersed gene family protein 1 of Trypanosoma cruzi C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.0   0.5    0.0082        49      26      61 ..     566     599 ..     561     630 .. 0.72
   2 ?    7.3   0.3   0.00077       4.6      34      72 ..    1341    1376 ..    1322    1386 .. 0.79

  Alignments for each domain:
  == domain 1  score: 4.0 bits;  conditional E-value: 0.0082
     DGF-1_C  26 deesdeelrklhdvtsssyasgttvassyrPPappl 61 
                  e sde +rk   +++ + a  t+ +s +r P+p  
  KOO22659.1 566 RERSDERVRK--SMAARATAPTTAPSSNFRTPSPLE 599
                 4678888887..588899999***********9943 PP

  == domain 2  score: 7.3 bits;  conditional E-value: 0.00077
     DGF-1_C   34 rklhdvtsssyasgttvassyrPPapplqplagdtrsda 72  
                  + + d+t  sy +  t +ss rP  p    + +dtr +a
  KOO22659.1 1341 QMPCDITVGSYHACVTSSSSLRPTVP---LVPADTRHNA 1376
                  56789******************998...6778888776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1651 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       554  (0.0308997); expected 358.6 (0.02)
Passed bias filter:                      363  (0.0202465); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.88u 0.28s 00:00:01.16 Elapsed: 00:00:00.44
# Mc/sec: 11232.42
//
Query:       KOO22660.1  [L=512]
Description: hypothetical protein Ctob_000593 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.034   14.5   1.5      0.074   13.4   0.6    2.0  2  AAA_16    AAA ATPase domain
       0.12   12.5   0.0       0.33   11.1   0.0    1.7  1  DpaA_N    Dipicolinate synthase subunit A N-terminal domain


Domain annotation for each model (and alignments):
>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.0      0.73   6.6e+03      84      88 ..     303     307 ..     255     350 .. 0.50
   2 ?   13.4   0.6   8.2e-06     0.074      58     153 ..     387     499 ..     374     505 .. 0.58

  Alignments for each domain:
  == domain 1  score: -2.7 bits;  conditional E-value: 0.73
      AAA_16  84 qllde 88 
                 + l e
  KOO22660.1 303 AALGE 307
                 22222 PP

  == domain 2  score: 13.4 bits;  conditional E-value: 8.2e-06
      AAA_16  58 gkcdqlesaipy......salaqalareellrqlldeaesaeleawrekleealaavpelagaea................srllellkrll.allsrd 133
                 ++cd++++  ++      ++ a+ l + + ++ ++d+   a l+a + + ++al++++++ +aea                 +   +++rl  + l r+
  KOO22660.1 387 AWCDECGQVQSRqfvscrVQSASRL-A-HRVAVIDDD---AHLDALSSARHDALGSASSAVAAEAdvvlliawfwrcgahhGAAELAMQRLSqQPLVRH 480
                 4555553332222232234455555.4.445555555...34444444445555544444444445666777777777765555556666665555554 PP

      AAA_16 134 erplvlvlDdlqwadeaslq 153
                 +r +v+v Dd++w+++as+ 
  KOO22660.1 481 SR-VVVVSDDVHWVRDASAP 499
                 44.**************976 PP

>> DpaA_N  Dipicolinate synthase subunit A N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   3.6e-05      0.33       6      37 ..     333     364 ..     330     375 .. 0.82

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 3.6e-05
                 SB-HHHHHHHHHHHHTT-EEEEES-TSSS-BT CS
      DpaA_N   6 GGDaRqlylarkLaekgakvslygleleekie 37 
                 GGD+R + l+ ++a++g+ v+ + l  ++  e
  KOO22660.1 333 GGDLRAAQLVSEIAAEGHAVTYVSLTPARRPE 364
                 9**********************994444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (512 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       536  (0.0298957); expected 358.6 (0.02)
Passed bias filter:                      322  (0.0179597); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.46u 0.22s 00:00:00.68 Elapsed: 00:00:00.37
# Mc/sec: 4138.28
//
Query:       KOO22661.1  [L=987]
Description: annexin x [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.4e-54  181.3   0.1    2.8e-10   40.1   0.1    7.8  7  Annexin   Annexin
  ------ inclusion threshold ------
      0.091   12.2   0.0         15    4.9   0.0    2.4  2  DUF3500   Protein of unknown function (DUF3500)
       0.14   12.9   1.0       0.57   11.0   0.0    2.5  3  DUF4359   Domain of unknown function (DUF4359)


Domain annotation for each model (and alignments):
>> Annexin  Annexin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.0   0.0   3.7e-12   2.2e-08       9      62 ..     102     156 ..      90     158 .. 0.79
   2 !   15.7   0.0   1.9e-06     0.011      12      55 ..     183     226 ..     179     233 .. 0.95
   3 !   12.6   0.1   1.8e-05      0.11      15      55 ..     278     318 ..     261     329 .. 0.81
   4 !   19.9   0.0   9.6e-08   0.00057       3      56 ..     338     391 ..     336     394 .. 0.95
   5 !   21.2   0.0   3.6e-08   0.00022       5      64 ..     487     546 ..     482     548 .. 0.94
   6 !   26.6   0.0   7.7e-10   4.6e-06      21      66 .]     580     625 ..     576     625 .. 0.97
   7 !   40.1   0.1   4.7e-14   2.8e-10       3      66 .]     634     697 ..     633     697 .. 0.98

  Alignments for each domain:
  == domain 1  score: 34.0 bits;  conditional E-value: 3.7e-12
                 HHSSSSSCHHHHHHHHHHSTHHHHHHHHHHHHHHHSS-HHHHHHHHS.-HHHHHH CS
     Annexin   9 amkglGtdektlieIlatRsnaqlqaifeeYkkkygkdLekdIkset.sGdfekl 62 
                 ++ glG ++ +li  l+tR++ ql +++++Y++ y kd+   +k+et sG + ++
  KOO22661.1 102 GFLGLGRNDRKLIACLCTRTKSQLARTRRQYRELYDKDMRAEVKGETgSGGYGRM 156
                 244789**************************************88757777666 PP

  == domain 2  score: 15.7 bits;  conditional E-value: 1.9e-06
                 SSSSCHHHHHHHHHHSTHHHHHHHHHHHHHHHSS-HHHHHHHHS CS
     Annexin  12 glGtdektlieIlatRsnaqlqaifeeYkkkygkdLekdIkset 55 
                  lG+de++lie ++t ++ +lqa +++ + ++ ++L++ +++e+
  KOO22661.1 183 SLGCDETCLIELFVTQTQSELQAGKRKWEGRTDRSLIDYVTKEL 226
                 68***************************************997 PP

  == domain 3  score: 12.6 bits;  conditional E-value: 1.8e-05
                 SCHHHHHHHHHHSTHHHHHHHHHHHHHHHSS-HHHHHHHHS CS
     Annexin  15 tdektlieIlatRsnaqlqaifeeYkkkygkdLekdIkset 55 
                  d++ +ieI+   s aq + +++ Y+kk+ ++L  ++++++
  KOO22661.1 278 ADQSLIIEIIGANSRAQNMLVAALYEKKFDQSLSAALNDKC 318
                 79999*******************************99877 PP

  == domain 4  score: 19.9 bits;  conditional E-value: 9.6e-08
                 HHHHHHHHSSSSSCHHHHHHHHHHSTHHHHHHHHHHHHHHHSS-HHHHHHHHS- CS
     Annexin   3 AelLkkamkglGtdektlieIlatRsnaqlqaifeeYkkkygkdLekdIksets 56 
                 A +L++am+g+ t++++l + l     + +  ++e++++ky++ L +++  ++s
  KOO22661.1 338 AMRLHDAMEGWFTNKDVLSRLLGGLDGPKMVGVAEAFERKYSQPLWSALRAALS 391
                 789******************************************999998876 PP

  == domain 5  score: 21.2 bits;  conditional E-value: 3.6e-08
                 HHHHHHSSSSSCHHHHHHHHHHSTHHHHHHHHHHHHHHHSS-HHHHHHHHS-HHHHHHHH CS
     Annexin   5 lLkkamkglGtdektlieIlatRsnaqlqaifeeYkkkygkdLekdIksetsGdfeklll 64 
                 +L  am+g+ +d+ +l+e l+ R +   +a +++ +  +  +L + + +e+sGd++ l l
  KOO22661.1 487 ILDLAMEGSSVDHGALVEFLCARHPRRVRAAKAKWEGYHDDSLVDKLADELSGDMQALAL 546
                 7899***************************************************98765 PP

  == domain 6  score: 26.6 bits;  conditional E-value: 7.7e-10
                 HHHHHHSTHHHHHHHHHHHHHHHSS-HHHHHHHHS-HHHHHHHHHH CS
     Annexin  21 ieIlatRsnaqlqaifeeYkkkygkdLekdIksetsGdfeklllal 66 
                 ie l+  s++q   +++ Y++ y+ +L  ++++e sG ++++llal
  KOO22661.1 580 IETLCDNSAPQNAMVAKYYEEAYNTSLKRALTQEYSGPVKDALLAL 625
                 99******************************************98 PP

  == domain 7  score: 40.1 bits;  conditional E-value: 4.7e-14
                 HHHHHHHHSSSSSCHHHHHHHHHHSTHHHHHHHHHHHHHHHSS-HHHHHHHHS-HHHHHHHHHH CS
     Annexin   3 AelLkkamkglGtdektlieIlatRsnaqlqaifeeYkkkygkdLekdIksetsGdfeklllal 66 
                 A++Lk+a++g++t++ ++++Il  + + + +ai+ +++kky+++L  +++  ++G++++l +a+
  KOO22661.1 634 AAQLKAALSGSETNDRRVCRILGAHDKDEVKAIALAFEKKYNETLARVLTATLKGNYKRLAVAW 697
                 89**********************************************************9986 PP

>> DUF3500  Protein of unknown function (DUF3500)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.9   0.0    0.0026        15      57     105 ..     375     423 ..     369     429 .. 0.87
   2 ?    4.5   0.0    0.0035        21     207     251 ..     655     699 ..     649     708 .. 0.92

  Alignments for each domain:
  == domain 1  score: 4.9 bits;  conditional E-value: 0.0026
     DUF3500  57 seeqrkaalalLkaalSkeGyekalsimkleevLdegeYylalfGePss 105
                 +++  +  ++ L+aalS++   +a +i ++++ L++  ++l+ f +Pss
  KOO22661.1 375 ERKYSQPLWSALRAALSPRSEYDAGTISTTNNLLSAALFWLRSFHDPSS 423
                 55666778899***********************99***********87 PP

  == domain 2  score: 4.5 bits;  conditional E-value: 0.0035
     DUF3500 207 ltaeqqelllalikeylerlpeeaaeerlaeiekeldetyfaWiG 251
                 l a+ +++++a+  ++ ++++e++a+   a+++ +++++ +aWi 
  KOO22661.1 655 LGAHDKDEVKAIALAFEKKYNETLARVLTATLKGNYKRLAVAWID 699
                 667899*************************************95 PP

>> DUF4359  Domain of unknown function (DUF4359)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.1       1.6   9.3e+03      37      59 ..      63      87 ..      42      92 .. 0.70
   2 ?   11.0   0.0   9.5e-05      0.57      33      80 ..     259     308 ..     244     318 .. 0.79
   3 ?   -2.2   0.0       1.2   7.3e+03      42      79 ..     650     687 ..     594     696 .. 0.61

  Alignments for each domain:
  == domain 1  score: -2.6 bits;  conditional E-value: 1.6
     DUF4359 37 lek..lkseCkelvdsakpqikeli 59
                +++  + +eC + +++++  +ke++
  KOO22661.1 63 ADDakVMTECCTRLQAHNRRLKEYV 87
                2223378889999999999998876 PP

  == domain 2  score: 11.0 bits;  conditional E-value: 9.5e-05
     DUF4359  33 epklleklkseCke..lvdsakpqikelieestqrqNfilfSiyttelsl 80 
                 +++++++l++eC +    ++ ++ i e+i ++++ qN ++  +y+ +++ 
  KOO22661.1 259 AAEQAQQLHDECAKgfFEEADQSLIIEIIGANSRAQNMLVAALYEKKFDQ 308
                 35556669999*99533444999**********************99974 PP

  == domain 3  score: -2.2 bits;  conditional E-value: 1.2
     DUF4359  42 seCkelvdsakpqikelieestqrqNfilfSiyttels 79 
                 + C+ l ++ k+++k++  +  +++N  l  + t +l+
  KOO22661.1 650 RVCRILGAHDKDEVKAIALAFEKKYNETLARVLTATLK 687
                 33666666666666666666666666666555555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (987 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       599  (0.0334096); expected 358.6 (0.02)
Passed bias filter:                      458  (0.0255452); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.68u 0.28s 00:00:00.96 Elapsed: 00:00:00.42
# Mc/sec: 7063.19
//
Query:       KOO22662.1  [L=636]
Description: voltage-gated ion channel superfamily [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.3e-21   76.2   7.7    3.3e-21   75.6   6.3    1.9  2  Ion_trans  Ion transport protein
  ------ inclusion threshold ------
       0.66    9.6   5.8          2    8.0   0.4    2.3  2  DUF4131    Domain of unknown function (DUF4131)
          5    5.8   7.4         12    4.5   0.0    2.8  3  DUF2207    Predicted membrane protein (DUF2207)


Domain annotation for each model (and alignments):
>> Ion_trans  Ion transport protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   75.6   6.3   5.5e-25   3.3e-21       3     237 ..      87     402 ..      85     407 .. 0.79
   2 ?   -1.7   0.0      0.23   1.4e+03      45      82 ..     513     551 ..     477     571 .. 0.72

  Alignments for each domain:
  == domain 1  score: 75.6 bits;  conditional E-value: 5.5e-25
                 HHHHHHHHHHHHHHHHHHCCCSSSSHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHTH...........HHHHHHCHSHHHHHHHHHHHHHHHHH..... CS
   Ion_trans   3 vfelfilllillncvflaletyfpedelektileilelvftaiftlemllkilalgl...........likkrYlrdpwnilDflvvlpsllsl..... 85 
                 +++ + +l + +++++ ++e     +++  ++l+++++++++if+++++++++   +           +i+ +Ylr  w+ +D++ vlp++        
  KOO22662.1  87 YWDGITTLALAYTATVTPFEVGLGLETKL-NVLFYVNTAINIIFVMDIIWQFFLPVPdkegnlvrshyKIACKYLRG-WFAMDLFTVLPFDSLQlmgal 183
                 89999999999999999998887775555.***********************9444677889**************.9************96645554 PP

                 .HHHH..............HHHHHHHHHHHHGGGGGGHHHCHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCC.......... CS
   Ion_trans  86 .vlse..............esllllsvlrlfrvlrllklisrleglrtlvtalirsvkdllnvlllllvvlfifaligvqlfkgklrek.......... 159
                  +  +                + + ++l+l+rvlr+ ++++r+++  +l  +    + + + +++l++++++++al+  ql  +++r +          
  KOO22662.1 184 pT--DgacgdstgmllkavRIVRVARLLKLLRVLRASRIVTRWQSQLNLSSTTQSLFTAWFAFIILVHWLACLWALMP-QLQ-NSWRDEplviaaleer 278
                 40..1555555667776677888999999999999999999999988888899999999*****************98.888.89**99********99 PP

                 ........................................CC..........SCCSTSSSTTTSSSSSSHHHHHHHHHH..HHTTSSHHHHHHHHHHHS CS
   Ion_trans 160 ........................................ne..........caktwenpnngntnFdnfftallwlfr..lmttegwgdilyatldek 206
                                                         ne          c ++ ++   +   +d+  t +l+++   lm + g + ++y+t d++
  KOO22662.1 279 vlrdptcdaclcagdraseacsspcltpceievaanvthsNEahvhmmeswmC-RASTDGLLPSDFVDKPYTVWLSALMvaLMAMLGGTSVVYPTNDYE 376
                 99999999999999999888888887777766655554441144444444532.3333333444444555555555555569999999*********** PP

                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
   Ion_trans 207 skvaliyfvifiilgsflllNlliaviadnf 237
                      + f ++i++++ + ++ + +vi++++
  KOO22662.1 377 -----YSFFMVIFIIAAFAFAWVQGVIISAL 402
                 .....88888999999999*******99976 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 0.23
                 HHHHHHHHHHHHHTH.HHHHHHCHSHHHHHHHHHHHHHH CS
   Ion_trans  45 iftlemllkilalgl.likkrYlrdpwnilDflvvlpsl 82 
                  f  e+ + i++ g+    + ++++ + + D++ ++p l
  KOO22662.1 513 TFDGEARMYIIVSGIaSRGGAFFTSGMSWGDIILASPLL 551
                 555566677777888666677999999999999999876 PP

>> DUF4131  Domain of unknown function (DUF4131)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.8   0.7    0.0068        41      30      64 ..     239     273 ..     202     284 .. 0.75
   2 ?    8.0   0.4   0.00034         2       4      54 ..     347     401 ..     345     416 .. 0.74

  Alignments for each domain:
  == domain 1  score: 3.8 bits;  conditional E-value: 0.0068
     DUF4131  30 rrvllllllllllallgfalrapqpnandlsqlle 64 
                   ++++++l+ +la+l+++ +++q++ +d + ++ 
  KOO22662.1 239 TAWFAFIILVHWLACLWALMPQLQNSWRDEPLVIA 273
                 456999999999*******9999999888887775 PP

  == domain 2  score: 8.0 bits;  conditional E-value: 0.00034
     DUF4131   4 plalvllalllllllllllllrr....rprrrvllllllllllallgfalrapqp 54 
                 p+ ++l al+++l++ l+  +       + + +++++++++++a+++++    ++
  KOO22662.1 347 PYTVWLSALMVALMAMLGGTSVVyptnDYEYSFFMVIFIIAAFAFAWVQGVIISA 401
                 6777777777777777766655566668888899999999999999988666555 PP

>> DUF2207  Predicted membrane protein (DUF2207)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.5   0.0     0.002        12     343     457 ..      49     165 ..      31     183 .. 0.76
   2 ?   -0.6   0.2     0.072   4.3e+02     198     228 ..     231     261 ..     213     273 .. 0.73
   3 ?    3.8   0.8    0.0034        20     387     432 ..     351     396 ..     340     427 .. 0.52

  Alignments for each domain:
  == domain 1  score: 4.5 bits;  conditional E-value: 0.002
     DUF2207 343 akkskkkakkfkkalkkwksavkkkergyfdkkgkkklkklsalglgliilglilillallllvlllvfllilllillliaiivlllfsrllgrrteeG 441
                 ++ ++++ ++f+  +++++  +++++rg+++ ++  ++++ ++  l+l+  +++  + + l+l + l+ l+++ +++ +i+++ +++   +l+ + +eG
  KOO22662.1  49 SEADNTRISRFRCDVEQLRAHLTETRRGFINPRSVYQAYWDGITTLALAYTATVTPFEVGLGLETKLNVLFYVNTAINIIFVMDIIWQ-FFLPVPDKEG 146
                 444555889999999999999999*********9888888888888888888888777777777777777777777777777777765.78******** PP

     DUF2207 442 aellakwkgFkkyLe...D 457
                 + ++++ k   kyL+    
  KOO22662.1 147 NLVRSHYKIACKYLRgwfA 165
                 *999998888888875553 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 0.072
     DUF2207 198 reraarlslallillilllilllllllllli 228
                 ++ ++ l+ a+++++il+ +l++l++l++ +
  KOO22662.1 231 SSTTQSLFTAWFAFIILVHWLACLWALMPQL 261
                 5556667777778888888888888887655 PP

  == domain 3  score: 3.8 bits;  conditional E-value: 0.0034
     DUF2207 387 glgliilglilillallllvlllvfllilllillliaiivlllfsr 432
                 +l +++++l+++l++  ++++++ + + +++++++ia++++++ ++
  KOO22662.1 351 WLSALMVALMAMLGGTSVVYPTNDYEYSFFMVIFIIAAFAFAWVQG 396
                 3333334444444444444444555555555555555555555544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (636 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       788  (0.0439511); expected 358.6 (0.02)
Passed bias filter:                      456  (0.0254337); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.59u 0.26s 00:00:00.85 Elapsed: 00:00:00.42
# Mc/sec: 4598.89
//
Query:       KOO22663.1  [L=174]
Description: hypothetical protein Ctob_000583 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (174 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       954  (0.0532099); expected 358.6 (0.02)
Passed bias filter:                      423  (0.0235931); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.41u 0.22s 00:00:00.63 Elapsed: 00:00:00.38
# Mc/sec: 1382.01
//
Query:       KOO22664.1  [L=181]
Description: hypothetical protein Ctob_000582 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
  ------ inclusion threshold ------
      0.064   12.8   0.0        0.1   12.1   0.0    1.4  1  Alginate_lyase  Alginate lyase


Domain annotation for each model (and alignments):
>> Alginate_lyase  Alginate lyase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   5.8e-06       0.1     123     160 ..     141     180 ..      98     181 .] 0.81

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 5.8e-06
                     HHHC..TTCSSSHHHHHHHHHHHHHHHHHHHHHCHHHCCC CS
  Alginate_lyase 123 lall..eaakalpekerkaiekWfkklldwlqtsrkgkde 160
                     ++l+   +a ++ +k+++  ekW+++l +wl  sr gk +
      KOO22664.1 141 FKLIaeDQAVGFEAKDEEVKEKWMSTLQEWLRSSRAGKSR 180
                     55556788999************************99865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (181 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       586  (0.0326845); expected 358.6 (0.02)
Passed bias filter:                      404  (0.0225333); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.23s 00:00:00.64 Elapsed: 00:00:00.40
# Mc/sec: 1370.52
//
Query:       KOO22665.1  [L=200]
Description: hypothetical protein Ctob_006592 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    4.5e-18   64.8   1.4    6.7e-18   64.3   1.4    1.3  1  Homeodomain  Homeodomain
    7.8e-05   22.5   0.2    0.00013   21.7   0.2    1.3  1  Homeobox_KN  Homeobox KN domain
     0.0047   17.1   0.1     0.0073   16.5   0.1    1.2  1  DUF4611      Domain of unknown function (DUF4611)
  ------ inclusion threshold ------
      0.052   13.3   0.1        0.1   12.3   0.1    1.4  1  Pilus_CpaD   Pilus biogenesis CpaD protein (pilus_cpaD)


Domain annotation for each model (and alignments):
>> Homeodomain  Homeodomain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.3   1.4   1.5e-21   6.7e-18       3      56 ..     113     166 ..     111     167 .. 0.97

  Alignments for each domain:
  == domain 1  score: 64.3 bits;  conditional E-value: 1.5e-21
                  -SSSS-HHHHHHHHHHHHHSSS-SHHHHHHHHHHHTS-HHHHHHHHHHHHHHHH CS
  Homeodomain   3 kRttftkeqleeLeklFeenrypsaeereeLAkklgLeerqVkvWFqNrRakek 56 
                  +R++ t++q ++Le++Fe+ + ps+++r+ LA+k+g++ +q+kvWF NrR++++
   KOO22665.1 113 PRWNVTPDQRKTLEAFFEQVPLPSRAARQLLATKMGVSPQQIKVWFRNRRQRKR 166
                  8***************************************************98 PP

>> Homeobox_KN  Homeobox KN domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.7   0.2     3e-08   0.00013       9      40 .]     133     164 ..     130     164 .. 0.96

  Alignments for each domain:
  == domain 1  score: 21.7 bits;  conditional E-value: 3e-08
  Homeobox_KN   9 PYPseedKeeLlkeTglsvkqitnWFINaRrR 40 
                  P Ps++ ++ L+ + g s +qi+ WF N R+R
   KOO22665.1 133 PLPSRAARQLLATKMGVSPQQIKVWFRNRRQR 164
                  88****************************99 PP

>> DUF4611  Domain of unknown function (DUF4611)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.1   1.6e-06    0.0073      25      87 ..      42     101 ..      32     108 .. 0.82

  Alignments for each domain:
  == domain 1  score: 16.5 bits;  conditional E-value: 1.6e-06
     DUF4611  25 adrlksllsgvaqlreevsellstlveqeaqddvaaagdeeeegededdeeeekniknktksd 87 
                 ++ l+ l++g+     +v++++s l++q ++ d  ++ +e+++g  e+++ +e++++ k+  +
  KOO22665.1  42 THALEALVGGL---EFDVTDVISMLEDQAIESDCSHTTSEDDQGGGEEEAADERSVHGKSCPS 101
                 55666676665...579************9999999999999999999999999999997654 PP

>> Pilus_CpaD  Pilus biogenesis CpaD protein (pilus_cpaD)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.1   2.3e-05       0.1      10      68 ..      71     132 ..      67     153 .. 0.91

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 2.3e-05
  Pilus_CpaD  10 gCastaasnrettgsi...dyrsrhpivveeaeasldlkvasgdggLtaaqrarlealaeey 68 
                  C++t++++++  g++   d+rs+h     +++++   +++s+++++t++qr++lea++e++
  KOO22665.1  71 DCSHTTSEDDQGGGEEeaaDERSVHGKSCPSNSHKQRAPLSSPRWNVTPDQRKTLEAFFEQV 132
                 5999999999988887889****************************************976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (200 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       530  (0.029561); expected 358.6 (0.02)
Passed bias filter:                      410  (0.022868); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.40u 0.27s 00:00:00.67 Elapsed: 00:00:00.40
# Mc/sec: 1489.96
//
Query:       KOO22666.1  [L=491]
Description: 1-aminocyclopropane-1-carboxylate deaminase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.6e-12   46.3   0.0    7.4e-12   45.3   0.0    1.5  1  PALP      Pyridoxal-phosphate dependent enzyme


Domain annotation for each model (and alignments):
>> PALP  Pyridoxal-phosphate dependent enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.3   0.0   4.1e-16   7.4e-12       5     190 ..      72     287 ..      68     358 .. 0.78

  Alignments for each domain:
  == domain 1  score: 45.3 bits;  conditional E-value: 4.1e-16
                 SSS--EEEECCTCCCCCCE..EEEEEGGGST..TSBTTHHHHHHHHHH....HHTT...TTTSEEEEEBSSHHHHHHHHHHHHH..T-EEEEE...... CS
        PALP   5 igpTPlvrlprlskelgvp..lflKlEslnp..tgSfKdRgaeyllar....lkeg...tgaktvveassGNhgralAaaaall..Glkvtiv...... 84 
                   pTP+++   +s e g++  +f+K+E+l     g++K+R++++ la     l+ g       tv+ + ++N ++a+A  aa++   l  t+       
  KOO22666.1  72 RFPTPVHETS-VSSESGAElhFFVKREDLSStlYGGNKVRTLQFQLAIiearLEAGepdVLPLTVIGTWGSNQCVATAVHAAHAipSLLPTLNvallep 169
                 5799*97775.5779999999*********7689*********988885555444488878889999999************66444433333355577 PP

                 .EETTS-HHHHHHHHHTT-EEEEECCHHHHHHHHHHHHHHHSTTCEE--TTTSHHHHHHHHTHHHHHHHHTT....TTEEEEEEE-SSSHHHHHHHHHH CS
        PALP  85 .vpadaspekvallrllGaevvevggdydeavaaaaelaaegegaylvsqfdnptviegygtiglEileqlg....gkpdavvvpvGgGgliaGiaagl 178
                  v + +++ +v+   + G ++ +   ++ +++aa++++a  g+g +l+  +++p +++g+ +++lE++eq+      +pd ++v++G+  +++G+  g 
  KOO22666.1 170 eVADIDNTLNVLSVLSVGRTLPLL--SPLHSLAAIMRAAFWGRGTVLTMGGNSPSGCLGQVSAMLELAEQIEsgdaADPDRIYVAMGSSCTVSGLIIGC 266
                 777777789999999999888888..6677777766666668*****************************************************9999 PP

                 HH.........HSTT-EEEEE CS
        PALP 179 ke.........rrpdvrvigv 190
                 +          + p  rv+gv
  KOO22666.1 267 ALsrrlglrafESPRFRVCGV 287
                 986666665555555666666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (491 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       250  (0.0139439); expected 358.6 (0.02)
Passed bias filter:                      233  (0.0129957); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.52u 0.25s 00:00:00.77 Elapsed: 00:00:00.43
# Mc/sec: 3428.31
//
Query:       KOO22667.1  [L=176]
Description: hypothetical protein Ctob_006595 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
  ------ inclusion threshold ------
      0.025   14.5   7.3      0.032   14.2   7.3    1.2  1  eIF3_subunit  Translation initiation factor eIF3 subunit
      0.098   12.6   3.5        3.3    7.6   0.9    2.1  2  EMP24_GP25L   emp24/gp25L/p24 family/GOLD
        1.6    8.8   5.5        5.4    7.2   5.5    1.8  1  CHDCT2        CHDCT2 (NUC038) domain
        4.3    7.4   8.1          4    7.5   6.2    1.9  2  DUF4337       Domain of unknown function (DUF4337)
        4.7    7.7  16.3        8.4    6.9   9.7    2.1  2  APG6_N        Apg6 coiled-coil region


Domain annotation for each model (and alignments):
>> eIF3_subunit  Translation initiation factor eIF3 subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   7.3   8.9e-06     0.032      45     153 ..      26     141 ..      19     173 .. 0.53

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 8.9e-06
  eIF3_subunit  45 eekekakkaaeakak..aakakkkkskkqkiaeke...errkaeeeeaeeeeeleeedeaarkerlrkaeeesDlknaadlFGgv....attketdl 132
                   +e ++a ++ ++  k  + +++++ +++q+ + ++   er++  +e++++ +++ee     ++ +++ +e e  ++++ d +G+      t+   ++
    KOO22667.1  26 KEPPSASATRAR--KptTVATAQELATAQRQKREQeeiERKASLAEAEAARQAAEERVLVLERDLQQSREREEAMASTLDCIGQSsllpGTELPWTA 120
                   223333222222..23344444444444444443333323333333333333333344456788888888888899999999987777634444555 PP

  eIF3_subunit 133 ssldlfnpktkedFeelrkal 153
                   +++ ++ + +++ +++l ++l
    KOO22667.1 121 DDVRALAADEEAAHARLDELL 141
                   555555555555555555544 PP

>> EMP24_GP25L  emp24/gp25L/p24 family/GOLD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.6   0.9   0.00092       3.3      99     148 ..      53     102 ..      28     107 .. 0.85
   2 ?    5.6   0.1    0.0038        14     104     140 ..     128     164 ..     114     167 .. 0.84

  Alignments for each domain:
  == domain 1  score: 7.6 bits;  conditional E-value: 0.00092
  EMP24_GP25L  99 seasdykdsakkekletleselkkleekldsikreqkylrereerlrdtn 148
                  +++++++++  k +l + e   +  ee++  ++r+++  reree +  t+
   KOO22667.1  53 RQKREQEEIERKASLAEAEAARQAAEERVLVLERDLQQSREREEAMASTL 102
                  44566889999*********************************998876 PP

  == domain 2  score: 5.6 bits;  conditional E-value: 0.0038
  EMP24_GP25L 104 ykdsakkekletleselkkleekldsikreqkylrer 140
                  ++++a    l++l ++++ ++++l+++ ++q+ l +r
   KOO22667.1 128 ADEEAAHARLDELLNRVRSHNSHLFQMIQQQENLAQR 164
                  556788999**********************998877 PP

>> CHDCT2  CHDCT2 (NUC038) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.2   5.5    0.0015       5.4     126     163 ..     103     168 ..      25     173 .. 0.63

  Alignments for each domain:
  == domain 1  score: 7.2 bits;  conditional E-value: 0.0015
      CHDCT2 126 e............................kvLnqleelLsdmkadvsrlpatlsrlrpvaeRLqms 163
                                                  +l+elL+ +++  s+l  ++++++ +a+RL  s
  KOO22667.1 103 DcigqssllpgtelpwtaddvralaadeeAAHARLDELLNRVRSHNSHLFQMIQQQENLAQRLGTS 168
                 1333333333333333333444444444478899*****************************977 PP

>> DUF4337  Domain of unknown function (DUF4337)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.5   6.2    0.0011         4      68     113 ..      33      78 ..       9     100 .. 0.78
   2 ?   -0.6   0.0      0.35   1.3e+03      70     109 ..     125     164 ..     114     175 .. 0.66

  Alignments for each domain:
  == domain 1  score: 7.5 bits;  conditional E-value: 0.0011
     DUF4337  68 aeelaaavdkkiakykkkiarykkekkeikkkAkeleaerdeanea 113
                 a  +++ ++ + a+  ++++r k+e++ei++kA  +eae++++ ++
  KOO22667.1  33 ATRARKPTTVATAQELATAQRQKREQEEIERKASLAEAEAARQAAE 78 
                 3344444555566667889***************999998877655 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 0.35
     DUF4337  70 elaaavdkkiakykkkiarykkekkeikkkAkeleaerde 109
                 +laa+ ++++a++ +  +r ++  + + +  ++ e+ +++
  KOO22667.1 125 ALAADEEAAHARLDELLNRVRSHNSHLFQMIQQQENLAQR 164
                 4556666667777777777777777766666666666655 PP

>> APG6_N  Apg6 coiled-coil region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.9   9.7    0.0024       8.4      47     101 ..      44      98 ..      18     103 .. 0.83
   2 ?    5.1   0.5    0.0089        32      83     120 ..     125     162 ..     115     166 .. 0.67

  Alignments for each domain:
  == domain 1  score: 6.9 bits;  conditional E-value: 0.0024
      APG6_N  47 eeleeleeeleklekeeeelleeLkelekereeleaelaaleeelealeeeeerf 101
                 +  e +  + +k e+ee e  + L+e+e++r++ e+ +  le+ l++  e ee+ 
  KOO22667.1  44 TAQELATAQRQKREQEEIERKASLAEAEAARQAAEERVLVLERDLQQSREREEAM 98 
                 44555666678999**********************************9999976 PP

  == domain 2  score: 5.1 bits;  conditional E-value: 0.0089
      APG6_N  83 elaaleeelealeeeeerfwreynelqlelleleeeld 120
                 +laa ee + a+ +e  + +r++n++  ++++ +e l+
  KOO22667.1 125 ALAADEEAAHARLDELLNRVRSHNSHLFQMIQQQENLA 162
                 34455555555555667778888888888888887765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (176 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1973  (0.110045); expected 358.6 (0.02)
Passed bias filter:                      667  (0.0372023); expected 358.6 (0.02)
Passed Vit filter:                        62  (0.00345808); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.47u 0.24s 00:00:00.71 Elapsed: 00:00:00.41
# Mc/sec: 1301.32
//
Query:       KOO22668.1  [L=606]
Description: gelsolin-like protein 2-like protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.2e-28   98.8   0.0    8.6e-12   44.8   0.0    3.3  3  Gelsolin  Gelsolin repeat
      8e-11   41.9   0.0    1.5e-10   41.1   0.0    1.4  1  ZT_dimer  Dimerisation domain of Zinc Transporter
  ------ inclusion threshold ------
      0.083   12.7   0.0       0.26   11.2   0.0    1.9  1  IQ        IQ calmodulin-binding motif


Domain annotation for each model (and alignments):
>> Gelsolin  Gelsolin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.8   0.0   1.4e-15   8.6e-12       6      75 ..     238     330 ..     233     331 .. 0.96
   2 !   34.8   0.0   1.8e-12   1.1e-08       5      53 ..     375     423 ..     372     443 .. 0.86
   3 !   15.4   0.0   2.2e-06     0.013      13      76 .]     523     587 ..     518     587 .. 0.85

  Alignments for each domain:
  == domain 1  score: 44.8 bits;  conditional E-value: 1.4e-15
                 EEBSSSGGGEETTSEEEEEESS........................EEEEEEHTTSHHHHHHHHHHHHHHHHHCTTTTTSEEEEEETTHHHHHH CS
    Gelsolin   6 kvvklsssslesgdcyLLdngf........................tiflWiGkessqeeknfaadlaaeldseerfplpeliredqgkeparF 75 
                 + ++  ++ + +gd+y++++++                        ++++WiG++s+q+e ++aa+ + eld +++ + p+++re++g e++ F
  KOO22668.1 238 PWPPSQYGEFHRGDSYIILHTYkaeqqagvrttrtpdqksflglawDVHFWIGSQSTQDEYGAAAYKTGELD-NKLRGGPVQHREVEGAESDLF 330
                 5678899*****************************************************************.******************988 PP

  == domain 2  score: 34.8 bits;  conditional E-value: 1.8e-12
                 EEEBSSSGGGEETTSEEEEEESSEEEEEEHTTSHHHHHHHHHHHHHHHH CS
    Gelsolin   5 pkvvklsssslesgdcyLLdngftiflWiGkessqeeknfaadlaaeld 53 
                 + + +l+  s +sgd++++d+ + if+W+G+ +s  ek++a dla  l 
  KOO22668.1 375 VRQIRLKRTSMNSGDVFIMDCDDAIFQWNGSSASAHEKAKARDLALLLQ 423
                 567889999***********************************98766 PP

  == domain 3  score: 15.4 bits;  conditional E-value: 2.2e-06
                 GGEETTSEEEEEESSEEEEEEHTTSHHHHHHHHHHHHHHHH.HCTTTTTSEEEEEETTHHHHHHH CS
    Gelsolin  13 sslesgdcyLLdngftiflWiGkessqeeknfaadlaaeld.seerfplpeliredqgkeparFl 76 
                 s l+++++ L d+gf++f+W Gk++ ++ +  +  +a+ +    +r+   ++ r ++gke+  Fl
  KOO22668.1 523 SRLKHDRVCLFDTGFQLFIWAGKDAPLQDRSSSFMSAQAYLkRWKRPSVLPITRFNDGKESSAFL 587
                 6799999*****************77777777777777777677888888999999999999986 PP

>> ZT_dimer  Dimerisation domain of Zinc Transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.1   0.0   2.4e-14   1.5e-10       2      77 ..      23      98 ..      22     100 .. 0.96

  Alignments for each domain:
  == domain 1  score: 41.1 bits;  conditional E-value: 2.4e-14
                ...HHHHHHHHHTT-SS-EEEEEEEEE-S----EEEEEEEE-TTS-HHHHHHHHHHHHHHHHHH-TT--EEEEEEE CS
    ZT_dimer  2 deeeeeeireiiksvpgvkgvhdlrtrksGskifvdlhievdgdlsvkeaHeiadevekrikeefpgvadvliHve 77
                d+e++++++++ik+  + ++  +lr+r+ G++ fv+l ++v+  ls++ a ++a++ + r+ e +p+va++ i ++
  KOO22668.1 23 DDETLDRVTKLIKQDADAIDLSQLRVRRLGPYSFVELRLQVPYWLSISAAQQVATKAKLRVLEGMPEVAECSIELD 98
                899********************************************************************99876 PP

>> IQ  IQ calmodulin-binding motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   4.3e-05      0.26       2      18 ..     168     184 ..     167     185 .. 0.93

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 4.3e-05
                 HHHHHHHHHHHHHHHHH CS
          IQ   2 kaaikIQaawRGylaRk 18 
                 +aa+k+Qa+ RG  +Rk
  KOO22668.1 168 EAATKLQAVSRGRSVRK 184
                 69***********9998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (606 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       542  (0.0302304); expected 358.6 (0.02)
Passed bias filter:                      388  (0.0216409); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.55u 0.26s 00:00:00.81 Elapsed: 00:00:00.42
# Mc/sec: 4359.96
//
Query:       KOO22669.1  [L=350]
Description: branched-chain-amino-acid aminotransferase-like protein chloroplastic-like protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
      3e-27   95.9   0.0      4e-27   95.5   0.0    1.1  1  Aminotran_4  Amino-transferase class IV


Domain annotation for each model (and alignments):
>> Aminotran_4  Amino-transferase class IV
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   95.5   0.0   2.2e-31     4e-27       2     212 ..      73     295 ..      72     304 .. 0.91

  Alignments for each domain:
  == domain 1  score: 95.5 bits;  conditional E-value: 2.2e-31
  Aminotran_4   2 lfEtmrvyngeiffldeHleRLrksaellgl.....elpfdeeelrkileelleannsen.grlrllvsrgggglg...aatsepsvavyvsalppgp 90 
                  +f+t +v ng++f l  Hl+RL  sa+l+++     +   d   lr+i+ ++++a + +  + +r+++s+g g+++   + ++ p+++ +v++ ++++
   KOO22669.1  73 VFDTANVANGRVFGLTMHLNRLLSSARLAKIigeepPAAADPAVLRSIILQTIAATGRRDsVFVRYWLSAGRGDFSispKRCVGPTFYCVVHEDTHSA 170
                  8***************************9999999888999999****************888**************99999999******9999999 PP

  Aminotran_4  91 esekelplvtssdvrrdapsplpgaKtlnyldnvlarreakergadevllvdedgnvtEgstsNv.fivkggelitPplssgiLpGitrrallelaka 187
                  + e+ +++v    +   +p  l+++K+ ny+ n+l+++ea+++ga   + ++edg++ E s ++v ++++ g l tPp++  iL+++t +++ +la++
   KOO22669.1 171 AGERGMSAVMV--TVPLKPPLLATMKSNNYMLNALVALEAEAAGASMGIQLHEDGRLAESSVATVgVVDRYGWLRTPPPDA-ILNSTTWARATALAPN 265
                  99999333333..45666778899*******************************************************99.**************** PP

  Aminotran_4 188 l...gl..eveereitlkdleeadeafltn 212
                  l   g+   ++ ++i+ +++eea e++  +
   KOO22669.1 266 LvgsGViqGCKVGPISRAEIEEARELLSFG 295
                  **665445566*************997665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (350 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       211  (0.0117686); expected 358.6 (0.02)
Passed bias filter:                      192  (0.0107089); expected 358.6 (0.02)
Passed Vit filter:                        12  (0.000669307); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.21s 00:00:00.66 Elapsed: 00:00:00.39
# Mc/sec: 2675.67
//
Query:       KOO22670.1  [L=728]
Description: btb poz domain containing protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.7e-30  104.8   0.3    3.8e-06   27.6   0.1    5.3  4  Filamin     Filamin/ABP280 repeat
    2.7e-05   24.4   3.3      0.045   14.1   0.3    3.4  3  Invasin_D3  Invasin, domain 3


Domain annotation for each model (and alignments):
>> Filamin  Filamin/ABP280 repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.0     2e-06     0.018      73     102 ..     202     233 ..     121     234 .. 0.89
   2 !   27.6   0.1   4.3e-10   3.8e-06      60     102 ..     298     342 ..     246     343 .. 0.71
   3 !   27.6   0.0   4.3e-10   3.9e-06       5     101 ..     354     588 ..     352     590 .. 0.79
   4 !   19.8   0.0   1.2e-07     0.001       5      95 ..     601     696 ..     597     702 .. 0.71

  Alignments for each domain:
  == domain 1  score: 15.8 bits;  conditional E-value: 2e-06
                 EEEEEE--SSSCEEEEEEEETTC..E-TTSSE CS
     Filamin  73 tytvsYtpeepgtyrvsvkldgk..higgsPf 102
                 +++vsY + ++gty ++v+l+++  +i+gsPf
  KOO22670.1 202 KHKVSYSIGKVGTYLLHVRLRQQaiSIPGSPF 233
                 679*****************9986799****9 PP

  == domain 2  score: 27.6 bits;  conditional E-value: 4.3e-10
                 ...EEEEEEEE-SSSEEEEEE--SSSCEEEEEEEETTCE-TTSSE CS
     Filamin  60 s..svkievvdnedgtytvsYtpeepgtyrvsvkldgkhiggsPf 102
                 +  ++ + v+d++dg+y+ ++  +++gty v +k++++hi gsP 
  KOO22670.1 298 EdkNFVVTVTDQGDGSYRLHWSTHKSGTYVVAIKIANEHIVGSPT 342
                 13366789************************************6 PP

  == domain 3  score: 27.6 bits;  conditional E-value: 4.3e-10
                 TSEEEESGGGTEEETTS-EEEEEEESSSTSCC.CSTTS..EEEEE..ESSTS............................................... CS
     Filamin   5 skskvnGpGieasvagesltFtvytkdakgek.sevggdelqvrivtgsphgaatk........................................... 59 
                 +k +v+G+G+ +++ag++  F v+  d + ++ +++ gd++++ +v +++++  ++                                           
  KOO22670.1 354 EKTVVKGSGLTSGTAGQPSLFRVKFFDMYDNQaIPGPGDKIGLALVQSKSYKDVDQslkymmapvdpekpweqevsftpseqgsfslhiwtefttaqga 452
                 6899**********************887554167777*****99644444443337788888888888888888888888888888999999999999 PP

                 ................................................................................................EEE CS
     Filamin  60 ...................................................................................s............svk 63 
                                                                                                    +            +  
  KOO22670.1 453 qerspvqgspytctvaaglassevsfvdgwtketrqvdkngkaleindkiiagdavicqpiicdalgnktvpsagqlqvslalPngtavgidhsslK-L 550
                 9999999999999999999999999999999999999888888888888888888888877777777777766666665555505555556555322.3 PP

                 EEEEE-SSSEEEEEE--SSSCEEEEEEEETTCE-TTSS CS
     Filamin  64 ievvdnedgtytvsYtpeepgtyrvsvkldgkhiggsP 101
                 ie ++ +  ++tv+  ++ +g++++++ l+ ++i+gsP
  KOO22670.1 551 IETTKGGMTSFTVRHDVTNAGDHKMHIQLNSRPIRGSP 588
                 3566666779**************************** PP

  == domain 4  score: 19.8 bits;  conditional E-value: 1.2e-07
                 TSEEEESGGGTEEETTS-EEEEEEESSSTSCCCSTTS......EEEEE..ESSTS.......EEEEEEEE-SSSEEEEEE--.SSSCEEEEEEEETTC CS
     Filamin   5 skskvnGpGieasvagesltFtvytkdakgeksevgg....delqvrivtgsphgaatks..svkievvdnedgtytvsYtp.eepgtyrvsvkldgk 95 
                 ++ k++ p  ++  a++++t+  +t d  +++++ gg     +  +++v ++ h+  t +  +  +ev+dn+dgty+vs ++ + + t++v v +d++
  KOO22670.1 601 KMAKLTPPPENTLYANRPYTIVLKTFDRFNNPIPYGGlpvaAR--MQVVKNNAHDLTTLVsnNHSVEVSDNNDGTYNVSIQLiKIAATVKVIVNMDKN 696
                 55555555545668999******************99553333..4444577777766645555689************9651556888888888775 PP

>> Invasin_D3  Invasin, domain 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.1   0.3     5e-06     0.045      36      93 ..     287     346 ..     261     349 .. 0.75
   2 ?   -1.5   0.0      0.35   3.2e+03      30      81 ..     516     580 ..     501     589 .. 0.60
   3 !    9.0   0.1   0.00019       1.7      23      79 ..     620     692 ..     610     700 .. 0.70

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 5e-06
  Invasin_D3  36 vsgltvtfstt.sagtlsavtdngdGtytatLtattagtatitptvnG.vaiaatatvtl 93 
                 v+g+ v  +   ++  + +vtd+gdG y    +  ++gt+ +  ++ +  + +++ tv++
  KOO22670.1 287 VTGNPVDKTVLeDKNFVVTVTDQGDGSYRLHWSTHKSGTYVVAIKIANeHIVGSPTTVKF 346
                 3333332221122445678***************************99788888888998 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 0.35
  Invasin_D3  30 Dangnp...vsg.ltvtfsttsag........tlsavtdngdGtytatLta..ttagtatitptvn 81 
                 Da gn     +g l+v+++   +g        +l+ +++ + G+ + t+    t+ag  +   ++n
  KOO22670.1 516 DALGNKtvpSAGqLQVSLALP-NGtavgidhsSLKLIETTKGGMTSFTVRHdvTNAGDHKMHIQLN 580
                 555665555444366777765.44222343223333446666777777766655566666666666 PP

  == domain 3  score: 9.0 bits;  conditional E-value: 0.00019
  Invasin_D3  23 tltvtlkDangnp..vsgltvtfstt....sag.....tls......avtdngdGtytatLta.ttagtatitpt 79 
                 t+ ++  D ++np   +gl v+  ++    +                +v+dn+dGty + ++  + a t+++ + 
  KOO22670.1 620 TIVLKTFDRFNNPipYGGLPVAARMQvvknN-AhdlttL-VsnnhsvEVSDNNDGTYNVSIQLiKIAATVKVIVN 692
                 5667777999999888889988887766542.1333321.1344444677********99998666888777665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (728 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       450  (0.025099); expected 358.6 (0.02)
Passed bias filter:                      369  (0.0205812); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.59u 0.25s 00:00:00.84 Elapsed: 00:00:00.40
# Mc/sec: 5488.03
//
Query:       KOO22671.1  [L=206]
Description: DNAj-like subfamily c member 11-like protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.9e-18   65.3   0.1      8e-18   64.3   0.1    1.5  1  DnaJ      DnaJ domain


Domain annotation for each model (and alignments):
>> DnaJ  DnaJ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.3   0.1   4.4e-22     8e-18       1      63 []       4      69 ..       4      69 .. 0.91

  Alignments for each domain:
  == domain 1  score: 64.3 bits;  conditional E-value: 4.4e-22
                HHHHHHTSSTTG-HHHHHHHHHHHHHHHSTTTS..CCHH.HHHHHHHHHHHHHHHHTSHHHHHHHH CS
        DnaJ  1 dyYeiLgvskdasedeIkkaYrklalkyHPDkn..pkdp.eaeekFkeineAyevLsdpekRkqYD 63
                d+Y+ Lgv+++ased+I++aYr+l++ yHPD+   p+++  a+    +i+ Ay+vL d++kR  YD
  KOO22671.1  4 DLYATLGVESSASEDDIRRAYRRLSMTYHPDRRldPEEQrAAAPLWLRISSAYDVLADSRKRMVYD 69
                79*****************************8866444447777999******************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (206 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       408  (0.0227564); expected 358.6 (0.02)
Passed bias filter:                      359  (0.0200234); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.26s 00:00:00.62 Elapsed: 00:00:00.38
# Mc/sec: 1624.41
//
Query:       KOO22672.1  [L=754]
Description: diatom spindle kinesin 1 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    4.4e-44  150.8   0.0    3.8e-24   85.2   0.0    2.3  2  Kinesin      Kinesin motor domain
    2.7e-08   33.9   0.0    4.7e-08   33.1   0.0    1.4  1  Microtub_bd  Microtubule binding
    0.00066   19.7   0.0     0.0014   18.7   0.0    1.5  1  SAM_2        SAM domain (Sterile alpha motif)
     0.0039   17.3   0.0     0.0096   16.0   0.0    1.6  1  DUF87        Helicase HerA, central domain
  ------ inclusion threshold ------
      0.018   15.4   0.7      0.018   15.4   0.7    2.4  2  AAA_16       AAA ATPase domain
      0.027   14.8   0.0      0.075   13.3   0.0    1.7  1  AAA_22       AAA domain
       0.05   13.6   0.0       0.11   12.5   0.0    1.5  1  SAM_PNT      Sterile alpha motif (SAM)/Pointed domain
       0.25   10.8   0.0       0.47    9.9   0.0    1.3  1  AAA_7        P-loop containing dynein motor region
       0.31   11.0   3.9       0.82    9.7   3.9    1.7  1  DUF1471      Protein of unknown function (DUF1471)


Domain annotation for each model (and alignments):
>> Kinesin  Kinesin motor domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   85.2   0.0   1.9e-27   3.8e-24       1     213 [.     215     416 ..     215     439 .. 0.88
   2 !   62.9   0.0   1.2e-20   2.3e-17     232     328 ..     469     613 ..     453     616 .. 0.92

  Alignments for each domain:
  == domain 1  score: 85.2 bits;  conditional E-value: 1.9e-27
                 EE-SSSHHHHTTTTEBCEEEEC....TCTCEEEEEEEEECTTSCEEEEESEEEETTS-HHHHHHHHHHHHHHHHHTTS.EEEEEEEESTTSSHHHHHTB CS
     Kinesin   1 RvRplnekekeeeeeeevevee....ekkeeekkskkenkeeeekkfkFdkvfdeeatqeevyeetakplvesvleGy.natifaYGqtgsGKTyTmeg 94 
                 RvRpl+e e    e + v+  +    + ++    ++ ++ +  ++ ++ d++f ++a ++ v + + +pl+e+vl G   +t + YGqtg+GKTyTm+ 
  KOO22672.1 215 RVRPLQEYELGVGEYSSVDEAArarlVCHDARLARSGRRLTMLHRWYRVDRLFPSSACEDGVCDGVLQPLLERVLCGLgDCTALLYGQTGAGKTYTMSS 313
                 8888888888887777776655444444444445555666667788*******************************74799****************7 PP

                 CTTTSBSHHHHHHHHHHHHHHHCTTTHEEEEEEEEEEEEEETTEEEETTSTTTTSTSSEBEEEECTTSCCEEETTS--EEESSHHHHHHHHHHHHHHHT CS
     Kinesin  95 keeeeeGiipraleelFesikkekeekekefsvkvsylEiYneeiyDLLeskkskkkkklkiredskkgevyvkgltevevksaeevlellekgeknrk 193
                        ++ r+ +e+  +i +  e+      v+v+++E+  + ++DLL+++     +k+ +r d++   v+  g ++v v++a e+   l+ g + r+
  KOO22672.1 314 -------LLRRVAREVDARIGRGIEQ---PAAVEVTFFEVAADGCVDLLADR-----RKIALRSDENDV-VHACGARSVVVHTAAEFEAALQAGLALRS 396
                 .......7999999999999987766...789******************88.....4699******76.***************************** PP

                 STTSSCTSHHCCSEEEEEEE CS
     Kinesin 194 vaetklneeSSRSHavftit 213
                 + et++n  SSRSHa+ +++
  KOO22672.1 397 TVETQANPISSRSHAICNLR 416
                 ****************9987 PP

  == domain 2  score: 62.9 bits;  conditional E-value: 1.2e-20
                 EEEEEEEECCCHHHHSS.TCHHHHHHHHHHHHHHHHHHHHHHHHHHT..............................................CCTSTS CS
     Kinesin 232 lnLvDLAGsErasktga.aegerlkEaaniNkSLlaLgrvisaLaek..............................................kkskhi 283
                 l LvDLAGsEr ++t   ++++ +kE+ +iNkSLlaL+++ ++ a+                                               +    i
  KOO22672.1 469 LRLVDLAGSERNNETLFeTSRTFQKETIAINKSLLALKDCFRESARAraaastrtpdaaagrsemkavkapvddkaarppvdepwrsrhgvthRLPVRI 567
                 79***********998744555689****************99988889*****************************************99877889* PP

                 CGGGSHHHHHTGGGHSS.SSEEEEEEEE-TBGGGHHHHHHHHHHHH CS
     Kinesin 284 pYRdSkLTrlLqdsLgG.nsktlmivtvspssenleetlstlkfae 328
                 pYR S LTr+L+d++   + +t++++ v p +e++ +tl+tl+  +
  KOO22672.1 568 PYRASMLTRVLRDCFADpSHRTAIVAAVAPGAESVLHTLNTLDHVS 613
                 ***************984679*********************9865 PP

>> Microtub_bd  Microtubule binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.1   0.0   2.4e-11   4.7e-08      23     103 ..     211     316 ..     209     352 .. 0.74

  Alignments for each domain:
  == domain 1  score: 33.1 bits;  conditional E-value: 2.4e-11
                  EEEEEEECCCS-T.EEEETTT........................TTTEEEE-SEEEECTTHCCCCCCCC.HHHHHHHH.TT--EEEEEEES...... CS
  Microtub_bd  23 Rvfarvrpelesekakikfpe.....................eekkkkkefsFdrvfeseseqeevfeei.sqlvqsal.dgynvcifaygqTGsGKt 97 
                  Rvf+rvrp +e e    ++++                     + +  ++ ++ dr+f+s++ ++ v++ + + l++ +l    +++ + ygqTG+GKt
   KOO22672.1 211 RVFVRVRPLQEYELGVGEYSSvdeaararlvchdarlarsgrRLTMLHRWYRVDRLFPSSACEDGVCDGVlQPLLERVLcGLGDCTALLYGQTGAGKT 308
                  9*******99999744444433345566677777888888887789999************9999999863779*****55568889*********** PP

                  ........ CS
  Microtub_bd  98 yTmeg..e 103
                  yTm++  +
   KOO22672.1 309 YTMSSllR 316
                  ***99331 PP

>> SAM_2  SAM domain (Sterile alpha motif)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.7   0.0     7e-07    0.0014       1      47 [.     646     691 ..     646     692 .. 0.97

  Alignments for each domain:
  == domain 1  score: 18.7 bits;  conditional E-value: 7e-07
                 GGGHHHHHHHHHHHHTTTGGGHHHHHHTTCSHHHHHTTSCHHHHHHT CS
       SAM_2   1 veswsledvaeWLrsiglkqytdnFrdagitgaelllrlteedLkrl 47 
                 v+ w++e+v eWL++ + +++++    +gi g + ll++t+  L+++
  KOO22672.1 646 VHEWTAEQVVEWLGTAQAGRFAQVVVPKGIAG-KDLLGMTARRLTEM 691
                 799*****************************.*********99887 PP

>> DUF87  Helicase HerA, central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.0   4.8e-06    0.0096      29      54 ..     300     325 ..     297     326 .. 0.87

  Alignments for each domain:
  == domain 1  score: 16.0 bits;  conditional E-value: 4.8e-06
       DUF87  29 lgsTGsGKSntvavLleellekkgat 54 
                  g+TG+GK++t+++Ll++++++ +a+
  KOO22672.1 300 YGQTGAGKTYTMSSLLRRVAREVDAR 325
                 79****************99877666 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.1       1.1   2.1e+03      78     137 ..     135     192 ..      78     194 .. 0.45
   2 ?   15.4   0.7   9.2e-06     0.018      12      88 ..     281     355 ..     280     486 .. 0.60

  Alignments for each domain:
  == domain 1  score: -1.1 bits;  conditional E-value: 1.1
      AAA_16  78 reellrqlldeaesaeleawrekleeala.........avpelagaea....srllellkrll.allsrderpl 137
                 re +l+q++ e+                +         +++e ++ +a    + l  +l +l+ + + +++ pl
  KOO22672.1 135 REAVLEQEDKES----------------EsvrhvgstaPAGEESPPAAesliKKLTPELLELViESAMPGQGPL 192
                 222222222221................1333333333222222222223345555555555556666666666 PP

  == domain 2  score: 15.4 bits;  conditional E-value: 9.2e-06
      AAA_16  12 Llsalervrsgrp.elvllsGesGvGKsslvrellralekd...............ggiflrgkcdqlesaipysalaqalareellrqllde 88 
                 L+ +lerv  g + +  ll+G+ G GK+  + +llr++ ++               ++                  + +++ +++ +  l+d+
  KOO22672.1 281 LQPLLERVLCGLGdCTALLYGQTGAGKTYTMSSLLRRVAREvdarigrgieqpaavEVT-----------------FFEVA-ADGCVDLLADR 355
                 67788888888888999*******************99999665555555444444333.................33333.22222222222 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.0   3.8e-05     0.075       9      51 ..     298     347 ..     294     382 .. 0.76

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 3.8e-05
      AAA_22   9 vvtGesGtGKTtllrrlleqldeeakaee.......erpevvfvtlpsst 51 
                 +++G++G+GKT+++  ll++  +e +a+        + +ev f+++++++
  KOO22672.1 298 LLYGQTGAGKTYTMSSLLRRVAREVDARIgrgieqpAAVEVTFFEVAADG 347
                 79*****************9876666655888866666666677777777 PP

>> SAM_PNT  Sterile alpha motif (SAM)/Pointed domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   5.3e-05      0.11      18      66 ..     647     693 ..     637     699 .. 0.82

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 5.3e-05
                 GG--HHHHHHHHHHHHHHTT-SS-HGGGCTS-HHHHHHS-HHHHHHHSC CS
     SAM_PNT  18 qeWtkehVlewlewavkefdlakidfsefdmsGkeLcsltkeefleaap 66 
                  eWt e+V+ewl  a    + a++ + +  + Gk+L+ +t  +++e++ 
  KOO22672.1 647 HEWTAEQVVEWLGTAQA-GRFAQVVVPK-GIAGKDLLGMTARRLTEMLE 693
                 58**********97765.5667777777.8***********99999876 PP

>> AAA_7  P-loop containing dynein motor region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   0.0   0.00024      0.47      35      58 ..     296     319 ..     289     325 .. 0.88

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.00024
       AAA_7  35 pvllvGptGtGKtviikdllkkld 58 
                   ll+G+tG GKt ++++ll+++ 
  KOO22672.1 296 TALLYGQTGAGKTYTMSSLLRRVA 319
                 579****************99887 PP

>> DUF1471  Protein of unknown function (DUF1471)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   3.9   0.00041      0.82       9      33 ..     433     457 ..     430     458 .. 0.90

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 0.00041
                 ECSS-SSHHHHHHHHHHHHHHCT-S CS
     DUF1471   9 vsgvfgspsdledalskkAdekGAk 33 
                 ++ ++++p++++dal+ +Ad+ GA+
  KOO22672.1 433 ATSGASQPPEAADALADAADADGAA 457
                 56699*******************7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (754 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       532  (0.0296726); expected 358.6 (0.02)
Passed bias filter:                      388  (0.0216409); expected 358.6 (0.02)
Passed Vit filter:                        53  (0.0029561); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.64u 0.28s 00:00:00.92 Elapsed: 00:00:00.44
# Mc/sec: 5162.58
//
Query:       KOO22673.1  [L=1158]
Description: hypothetical protein Ctob_006587 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0004   19.4   7.3     0.0004   19.4   7.3    8.9  9  Spc7       Spc7 kinetochore protein
  ------ inclusion threshold ------
       0.16   11.8   0.0       0.16   11.8   0.0   10.1  9  PKcGMP_CC  Coiled-coil N-terminus of cGMP-dependent protein k


Domain annotation for each model (and alignments):
>> Spc7  Spc7 kinetochore protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.1   3.1     0.034     3e+02     174     226 ..      12      63 ..       2     119 .. 0.71
   2 !    3.2  14.3    0.0038        34     142     252 ..     157     269 ..     153     300 .. 0.81
   3 !    2.9   8.1    0.0047        42     168     253 ..     324     409 ..     320     424 .. 0.77
   4 ?   -4.9  25.2       1.1   9.5e+03     144     248 ..     429     537 ..     417     558 .. 0.54
   5 ?    1.1  15.7     0.016   1.4e+02     145     247 ..     528     628 ..     524     636 .. 0.85
   6 ?   -3.2  11.3      0.33     3e+03     174     254 ..     707     783 ..     663     792 .. 0.71
   7 ?    0.1  12.4     0.032   2.9e+02     147     260 ..     792     901 ..     782     925 .. 0.78
   8 ?   -0.6  14.8     0.054   4.9e+02     144     278 ..     870    1007 ..     860    1009 .. 0.66
   9 !   19.4   7.3   4.5e-08    0.0004     137     242 ..     951    1059 ..     948    1063 .. 0.92

  Alignments for each domain:
  == domain 1  score: 0.1 bits;  conditional E-value: 0.034
        Spc7 174 eekaeleeeleklqeaaeelesidkeeLeelreelaelkaeieekkkelaelq 226
                 ++ ++le+e++ + +  +  ++ d++++++l e+l++++ e+ee+++e + l+
  KOO22673.1  12 AYVSALEQEHRLQAASLQRQAAADEARIRALEEKLRTHD-ELEERRREADALR 63 
                 444555666555555555555666666666666666544.4555555555554 PP

  == domain 2  score: 3.2 bits;  conditional E-value: 0.0038
        Spc7 142 egleenlegleedkelLekqeeeldellpeleeekaeleeeleklqeaaeelesid..keeLeelreelaelkaeieekkkelaelqeqleeleekiee 238
                 e+l++++ +le+  e  +++   l ++l++ +++ a+ ++e +++++ ++ +++ +  + +L++lr++l++++a+ ++ ++ la  +e++ e+e  ++ 
  KOO22673.1 157 EVLQNRVRALEAGMESRDQELVALRTALDKSHTKAARARDESAHERAGSAAMQTHErlEMQLASLRSQLEAQEAQHQAERTALALSRERVREQERWLTR 255
                 677888888888888888888888899999999999999999999998888888775578899999999999999999999999999999998888888 PP

        Spc7 239 lkeqkseleeeiae 252
                  +eq + ++ e+  
  KOO22673.1 256 REEQLEAARREVHV 269
                 88888877777654 PP

  == domain 3  score: 2.9 bits;  conditional E-value: 0.0047
        Spc7 168 llpeleeekaeleeeleklqeaaeelesidkeeLeelreelaelkaeieekkkelaelqeqleeleekieelkeqkseleeeiaea 253
                 ll  l+ + aele+el+k  e+a+   + ++ e e +r  l+++++ +e   ke  +l +q+++ + + ++l+ + ++ + e+ + 
  KOO22673.1 324 LLATLRGQVAELEAELQKVSERAARQLTQERSEAERMRGGLRAAEEALETAHKERRQLLDQVAQADRRAAALDGEARTRMLEVHRL 409
                 56677888888999999888887777777788888888889999998888888888888888888888888877766666666554 PP

  == domain 4  score: -4.9 bits;  conditional E-value: 1.1
        Spc7 144 leenlegleedkelLekqeeeldellpeleee.kaeleeeleklqe...............aaeelesidkeeLeelreelaelkaeieekkkelaelq 226
                 + + ++g+ ++++ L+++e ++ +l+++l+ e +++l+e l+ + +               +            +++ e+l+++  e+ee++++l++  
  KOO22673.1 429 AADDVAGMLQEQRALDERERQALQLKESLRDEmHSQLREALALESQrvaqaweqreshrkaK------------QAAYEALDKARLEVEELRQQLQTAA 515
                 567899***********************977356999999999884443333333222222............2233333333333333333333333 PP

        Spc7 227 eqleeleekieelkeqkselee 248
                 +++ el+++   ++e ++++ee
  KOO22673.1 516 DEVRELRKDQHVARELRRSAEE 537
                 3333333333222222222222 PP

  == domain 5  score: 1.1 bits;  conditional E-value: 0.016
        Spc7 145 eenlegleedkelLekqeeel.dellpeleeekaeleeeleklqeaaeelesidkeeLeelreelaelkaeieekkkelaelqeqleeleekieelkeq 242
                  ++l    e++e L+k+e+e  ++   e e+   +l++ele+l + +      +++eL + + el+     +e++ + ++ lq++l + ++++ +l+e+
  KOO22673.1 528 ARELRRSAEEREGLHKRESETaKAEAAEAEATIIKLRAELESLSQVQLA---AKQTELDAHKAELKLSALSVEHRDASVKLLQDELHRRSKELLALREE 623
                 5667778889999999998773555678888889**********95543...689*******************************************9 PP

        Spc7 243 ksele 247
                 k+++e
  KOO22673.1 624 KRRVE 628
                 99886 PP

  == domain 6  score: -3.2 bits;  conditional E-value: 0.33
        Spc7 174 eekaeleeeleklqeaaeelesidkeeLeelreelaelkaeieekkkelaelqeqleeleekieelkeqkseleeeiaeae 254
                 e+  ++ee+++ + +++    + + + ++ +r e +++++++ e+++ la+ +e+ ++le ++ + +eq+++l +e++ ae
  KOO22673.1 707 ERLRSVEEKVQVEHTRR----TREAAVVKRVRAEYERAQSTVLELSRHLATERERNTSLELRLGQRDEQMRKLLTELQGAE 783
                 22233333333333322....346788999*********************************************999887 PP

  == domain 7  score: 0.1 bits;  conditional E-value: 0.032
        Spc7 147 nlegleedkelLekqeeeldellpeleeekaeleeeleklqeaaeelesidkeeLeelreelaelkaeieekkkelaelqeqleeleekieelkeqkse 245
                 +++ l++ ++l +++ e +d+ l +l+++ a+ eeel++++e++     +  +++ ++r e +++ ++   +++ l e+q  l+e ++++++ +++ + 
  KOO22673.1 792 RMSLLRTKATLAAEDSEMFDSGLARLTSRLAKFEEELQQEREKN----MLLLADVTQARAERESHGSDETVLRASLMEVQGLLDERDQQLAASNARLEV 886
                 4445555555556777888*******************999933....466899************************************999999888 PP

        Spc7 246 leeeiaeaervleec 260
                 ++ e++ +  ++ee+
  KOO22673.1 887 ARMELQVQLAMIEEE 901
                 888877655555544 PP

  == domain 8  score: -0.6 bits;  conditional E-value: 0.054
        Spc7  144 leenlegleedkelLekqeeeldellpeleeeka....eleeeleklqe.......aaeelesidkeeLeelreelaelkaeieekkkelaelqeql 229 
                  l+e+ ++l + +++Le  + el+  l  +eee      +l  +              a ++e+  ++ ++e+ ++l++++  + +k + l++l+++l
  KOO22673.1  870 LDERDQQLAASNARLEVARMELQVQLAMIEEEVRgtqlQLDVKD----ValqlqleHAMNHEEHANKFMAEVSDRLKRAHDAMCHKDDLLDTLNRKL 962 
                  44444455555555554444444444444444432211222221....12222333566677888999***************************** PP

        Spc7  230 eeleekieelkeqkseleeeiaeaervleeckgwsesevsrlkeevkal 278 
                  +e   ++++++eq s l+ e a+a r +    +  ++++++l+e++  +
  KOO22673.1  963 AETLRSLSTVDEQASALRVEAAAAHRAK----RLATQQLDNLQERHALM 1007
                  ******************9999877654....46666666666666655 PP

  == domain 9  score: 19.4 bits;  conditional E-value: 4.5e-08
        Spc7  137 legLkegleenlegleedkelLekqeeeldellpeleeekaeleeeleklqeaaeeles...idkeeLeelreelaelkaeieekkkelaelqeqle 230 
                   ++L ++l+++l++  +  +++++q + l     + ++ k   +++l++lqe+++ +++   +  e L ++r++l+++++ +++ ++++a+lq+ql 
  KOO22673.1  951 KDDLLDTLNRKLAETLRSLSTVDEQASALRVEAAAAHRAKRLATQQLDNLQERHALMQDdfkVATEALSNYRDTLVSAEVRMARDRERVASLQQQLR 1047
                  5789999999999999999**********99999999999999*********999999888899********************************* PP

        Spc7  231 eleekieelkeq 242 
                  +l ++i + ++q
  KOO22673.1 1048 DLHAQIRNGASQ 1059
                  *****9987765 PP

>> PKcGMP_CC  Coiled-coil N-terminus of cGMP-dependent protein kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.4   4.4     0.034     3e+02       7      26 ..      36      54 ..      33      60 .. 0.78
   2 ?   11.8   0.0   1.8e-05      0.16       9      33 ..     162     186 ..     160     187 .. 0.96
   3 ?    2.0   1.6     0.021   1.9e+02       8      25 ..     244     261 ..     239     270 .. 0.83
   4 ?    1.7   1.9     0.027   2.5e+02      12      28 ..     506     522 ..     503     526 .. 0.84
   5 ?   -2.4   1.5      0.49   4.4e+03      13      28 ..     606     621 ..     597     623 .. 0.83
   6 ?    3.0   0.1      0.01        91       5      18 ..     704     717 ..     703     721 .. 0.87
   7 ?    0.0   1.2     0.087   7.8e+02      12      27 ..     760     775 ..     755     780 .. 0.79
   8 ?   -0.1   0.3     0.099   8.9e+02      12      25 ..     890     903 ..     889     910 .. 0.81
   9 ?    0.7   0.2     0.055   4.9e+02       8      24 ..    1037    1053 ..    1034    1055 .. 0.90

  Alignments for each domain:
  == domain 1  score: 1.4 bits;  conditional E-value: 0.034
   PKcGMP_CC  7 DERIRELEkrlaekdeEIqE 26
                + RIR LE++l+  d E +E
  KOO22673.1 36 EARIRALEEKLRTHD-ELEE 54
                56*********9865.5555 PP

  == domain 2  score: 11.8 bits;  conditional E-value: 1.8e-05
   PKcGMP_CC   9 RIRELEkrlaekdeEIqELrskLDK 33 
                 R+R LE+ ++ +d E   Lr+ LDK
  KOO22673.1 162 RVRALEAGMESRDQELVALRTALDK 186
                 99**********************9 PP

  == domain 3  score: 2.0 bits;  conditional E-value: 0.021
   PKcGMP_CC   8 ERIRELEkrlaekdeEIq 25 
                 ER+RE E+ l +++e  +
  KOO22673.1 244 ERVREQERWLTRREEQLE 261
                 9*************9766 PP

  == domain 4  score: 1.7 bits;  conditional E-value: 0.027
   PKcGMP_CC  12 ELEkrlaekdeEIqELr 28 
                 EL ++l+   +E+ ELr
  KOO22673.1 506 ELRQQLQTAADEVRELR 522
                 89999999999999998 PP

  == domain 5  score: -2.4 bits;  conditional E-value: 0.49
   PKcGMP_CC  13 LEkrlaekdeEIqELr 28 
                 L++ l+++ +E   Lr
  KOO22673.1 606 LQDELHRRSKELLALR 621
                 999*****99988777 PP

  == domain 6  score: 3.0 bits;  conditional E-value: 0.01
   PKcGMP_CC   5 lKDERIRELEkrla 18 
                 lKDER R  E++++
  KOO22673.1 704 LKDERLRSVEEKVQ 717
                 8********99986 PP

  == domain 7  score: 0.0 bits;  conditional E-value: 0.087
   PKcGMP_CC  12 ELEkrlaekdeEIqEL 27 
                  LE rl ++de    L
  KOO22673.1 760 SLELRLGQRDEQMRKL 775
                 59********987766 PP

  == domain 8  score: -0.1 bits;  conditional E-value: 0.099
   PKcGMP_CC  12 ELEkrlaekdeEIq 25 
                 EL+ +la  +eE+ 
  KOO22673.1 890 ELQVQLAMIEEEVR 903
                 9***********96 PP

  == domain 9  score: 0.7 bits;  conditional E-value: 0.055
   PKcGMP_CC    8 ERIRELEkrlaekdeEI 24  
                  ER++ L+++l++ ++ I
  KOO22673.1 1037 ERVASLQQQLRDLHAQI 1053
                  99*********999888 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1158 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2339  (0.130459); expected 358.6 (0.02)
Passed bias filter:                      432  (0.024095); expected 358.6 (0.02)
Passed Vit filter:                       115  (0.00641419); expected 17.9 (0.001)
Passed Fwd filter:                        44  (0.00245412); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 2.15u 0.42s 00:00:02.57 Elapsed: 00:00:00.64
# Mc/sec: 5419.41
//
Query:       KOO22674.1  [L=177]
Description: hypothetical protein Ctob_007805 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
  ------ inclusion threshold ------
      0.013   14.6   1.2      0.014   14.5   1.2    1.1  1  BPL_N        Biotin-protein ligase, N terminal
      0.028   14.1   2.7      0.034   13.8   2.7    1.1  1  DUF885       Bacterial protein of unknown function (DUF885)
      0.099   13.3   1.4       0.24   12.1   0.4    2.0  2  DUF2853      Protein of unknown function (DUF2853)
       0.12   12.5   0.2       0.34   11.0   0.2    1.8  1  RPN1_C       26S proteasome non-ATPase regulatory subunit RPN
       0.15   11.1   1.4       0.16   11.0   1.4    1.2  1  eIF-4B       Plant specific eukaryotic initiation factor 4B
       0.33   11.4   9.0       0.17   12.3   0.7    2.6  2  YgaB         YgaB-like protein
       0.38   10.1  15.2       0.46    9.8  13.0    1.9  2  Tropomyosin  Tropomyosin
        7.1    6.1  11.2       0.46   10.0   1.4    2.1  2  HAUS6_N      HAUS augmin-like complex subunit 6 N-terminus


Domain annotation for each model (and alignments):
>> BPL_N  Biotin-protein ligase, N terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.5   1.2     6e-06     0.014     233     345 ..      27     138 ..       7     173 .. 0.58

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 6e-06
       BPL_N 233 ekeykkvveeleadekaRleflkalLt..klgLevneeeeetevpslsplllsslskeeveelleslkeklaaekeeeeevikdendtfrlekedeeea 329
                 + e k+v  +l+++e + ++ +++ +    ++Le++++++e +  +l  l++   +k++    +++++e+  ++ +  +e++ d nd +++++++ +++
  KOO22674.1  27 DAELKEVKAQLSQKELELKK-VREAFGiaLVQLEISANTTELALTELLDLTVREQKKRK--GEITQIQEQYEEQIRGLQELLGDYNDRMEFQQNSIKRN 122
                 34455566666666654333.23322211334444433444566666666665555555..4466666645444345679**************97666 PP

       BPL_N 330 eeaaeeeeeekedlee 345
                 ++ +++++ e++ + e
  KOO22674.1 123 AQITDSARAESAAYME 138
                 6555555555333332 PP

>> DUF885  Bacterial protein of unknown function (DUF885)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   2.7   1.5e-05     0.034     211     330 ..      52     170 ..      19     176 .. 0.77

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 1.5e-05
                 HHHHHHHHHHHHHSSSS-HHHHHHHHHHHHHHHHHHHHHHHHHH.HH.-.HHHHHHHHHCH-GGGEEESHHHHHHHHHHHHHHHHHHHCCHHHCCT--- CS
      DUF885 211 GeelYarllrsftttdltpeeihelglaelariraemeaiakev.gf.kgdlaevlaalrtdprfyleetdagreellaaaraaiaeldaklpehfgll 307
                 G +l ++ + ++t t+l + e+ +l   e ++ + e+ +i +++ +  +g l+e l   +   +f+ +++ + +++++++ara+ a+  ++++  +++ 
  KOO22674.1  52 GIALVQLEISANT-TELALTELLDLTVREQKKRKGEITQIQEQYeEQiRG-LQELLGDYNDRMEFQ-QNSIKRNAQITDSARAESAAYMERANLLYEKY 147
                 5555566666666.9999**************************444344.888888888777776.67778888************999999999999 PP

                 TTS-GCCCEEEEEE-SS.-SEEE CS
      DUF885 308 pkaplevrrvpefiapsasgayy 330
                  +a + +++++++++++  +a++
  KOO22674.1 148 VAASAMIEKLEAELKSNPVAAFF 170
                 99999999999999887444665 PP

>> DUF2853  Protein of unknown function (DUF2853)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.4   0.00011      0.24      36      65 ..      20      49 ..      15      64 .. 0.89
   2 ?   -1.4   0.0       1.7   3.8e+03      58      80 ..      75      97 ..      69     102 .. 0.74

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 0.00011
                CB--TT-HHHHHHHHHHIIIIIT---SSHH CS
     DUF2853 36 slVsasdksElervrenflkkkLglkdsde 65
                s V+as ++El+ v+ +  +k L+lk+  e
  KOO22674.1 20 SFVAASKDAELKEVKAQLSQKELELKKVRE 49
                68***********************98765 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 1.7
                T---SSHHHHHHHHHHHHHH-TT CS
     DUF2853 58 Lglkdsdeldaaikevlekmgks 80
                L ++++++ +  i ++ e+++++
  KOO22674.1 75 LTVREQKKRKGEITQIQEQYEEQ 97
                55667777788888888888765 PP

>> RPN1_C  26S proteasome non-ATPase regulatory subunit RPN1 C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.2   0.00015      0.34      23      45 ..     135     157 ..     134     166 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00015
      RPN1_C  23 aageRAELateeYiplssvLEgi 45 
                 a+ eRA+L  e+Y+++s ++E++
  KOO22674.1 135 AYMERANLLYEKYVAASAMIEKL 157
                 578******************87 PP

>> eIF-4B  Plant specific eukaryotic initiation factor 4B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   1.4   7.2e-05      0.16     399     457 ..      78     140 ..      25     160 .. 0.76

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 7.2e-05
      eIF-4B 399 esqqessedqnslkelisekekdlellirelddkvrfgqkaierPG....sgagrsatyserp 457
                  +q++ +++ ++++e+ +e+ + l+ l+ +++d++ f+q++i+r      s+ + sa+y er+
  KOO22674.1  78 REQKKRKGEITQIQEQYEEQIRGLQELLGDYNDRMEFQQNSIKRNAqitdSARAESAAYMERA 140
                 345677788999*******************************97522225555666677775 PP

>> YgaB  YgaB-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.7   7.7e-05      0.17      36      64 ..      24      52 ..      19      63 .. 0.88
   2 ?    2.9   2.1     0.067   1.5e+02      48      68 ..      79      99 ..      55     110 .. 0.70

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 7.7e-05
        YgaB 36 lekeaklesiqeeikrkkkeLkeiqkvFe 64
                  k+a+l+++++++++k  eLk++++ F 
  KOO22674.1 24 ASKDAELKEVKAQLSQKELELKKVREAFG 52
                679***********************996 PP

  == domain 2  score: 2.9 bits;  conditional E-value: 0.067
        YgaB 48 eikrkkkeLkeiqkvFekQte 68
                e k++k e+ +iq+ +e+Q+ 
  KOO22674.1 79 EQKKRKGEITQIQEQYEEQIR 99
                445566688888888888874 PP

>> Tropomyosin  Tropomyosin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8  13.0    0.0002      0.46     107     219 ..      22     139 ..      18     146 .. 0.85
   2 ?   -0.3   0.1      0.24   5.5e+02     134     152 ..     145     163 ..     135     173 .. 0.74

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.0002
  Tropomyosin 107 iaeeadrkyeEvarklvvvesdLeraeeraeaaeskiveLeeeLkvvgnnlksLevseeka.....seredeyeeeirtLeekLkeaeeRaeeAErsv 199
                  +a + d  ++Ev+ +l   e +L++ +e    a  + +   ++ + + ++l +L v e+k      ++ +++yee+ir L+e L ++++R e+   s+
   KOO22674.1  22 VAASKDAELKEVKAQLSQKELELKKVREAFGIALVQLEISANTTELALTELLDLTVREQKKrkgeiTQIQEQYEEQIRGLQELLGDYNDRMEFQQNSI 119
                  5667788999*******************99999999999999999************98722222456799**********************9999 PP

  Tropomyosin 200 qkLekevdrledeleaekek 219
                  ++  +  d+   e  a+ e+
   KOO22674.1 120 KRNAQITDSARAESAAYMER 139
                  99888888877777666665 PP

  == domain 2  score: -0.3 bits;  conditional E-value: 0.24
  Tropomyosin 134 eraeaaeskiveLeeeLkv 152
                  e+  aa ++i++Le eLk 
   KOO22674.1 145 EKYVAASAMIEKLEAELKS 163
                  6677788888889988885 PP

>> HAUS6_N  HAUS augmin-like complex subunit 6 N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.0   3.6      0.12   2.7e+02     125     192 ..      39     106 ..      21     118 .. 0.45
   2 ?   10.0   1.4    0.0002      0.46     152     199 ..     115     162 ..     105     172 .. 0.82

  Alignments for each domain:
  == domain 1  score: 1.0 bits;  conditional E-value: 0.12
     HAUS6_N 125 ekskklalevreaaskkaqdlsklvaahrvslrrflrekaaadra.rqkyqenaqllekkerelraele 192
                 +k+  + ++vrea++ +  +l+ +   ++++l+++l+   ++ ++   ++ + ++ +e+++r l++ l 
  KOO22674.1  39 QKEL-ELKKVREAFGIALVQLEISANTTELALTELLDLTVREQKKrKGEITQIQEQYEEQIRGLQELLG 106
                 2222.3344444444444444444444555555555443333222023444444444444444444444 PP

  == domain 2  score: 10.0 bits;  conditional E-value: 0.0002
     HAUS6_N 152 hrvslrrflrekaaadrarqkyqenaqllekkerelraeleelqaelk 199
                 +++s++r  ++  +a    ++y e+a+ll +k+ +  a++e+l+aelk
  KOO22674.1 115 QQNSIKRNAQITDSARAESAAYMERANLLYEKYVAASAMIEKLEAELK 162
                 566677777777777667****************************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (177 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1431  (0.0798148); expected 358.6 (0.02)
Passed bias filter:                      527  (0.0293937); expected 358.6 (0.02)
Passed Vit filter:                        47  (0.00262145); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.46u 0.24s 00:00:00.70 Elapsed: 00:00:00.41
# Mc/sec: 1296.71
//
Query:       KOO22675.1  [L=331]
Description: drug metabolite transporter superfamily [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.1e-49  169.4  11.4    1.4e-49  169.0  11.4    1.1  1  UAA            UAA transporter family
  ------ inclusion threshold ------
      0.024   14.7   5.7       0.27   11.3   0.1    3.0  3  DUF2619        Protein of unknown function (DUF2619)
       0.37   11.3   1.8        5.4    7.6   0.0    3.3  3  Phage_holin_1  Bacteriophage holin


Domain annotation for each model (and alignments):
>> UAA  UAA transporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  169.0  11.4   2.3e-53   1.4e-49       2     300 ..      11     316 ..      10     318 .. 0.87

  Alignments for each domain:
  == domain 1  score: 169.0 bits;  conditional E-value: 2.3e-53
         UAA   2 lllavslvfvgccsnvvllElivkeepkafg......nlltfvqflfvalegllesid.ilkkrkiPlktYvilvalffitsvlnnealkydisvPvhi 93 
                 ll+a+s++f ++ + +vl+E ++k+++++ g       l  fv+ ++ a+ +l+  +       +i+  + +   +  ++ ++ +ne+l y +s+P++i
  KOO22675.1  11 LLIACSGIFASFSYFAVLQEDVYKKKYGEQGekfsatLLAIFVERAINAVLALIGMLVlGGSGVQIAFMDIFNSGVSQMLAMAASNESLRY-VSMPTQI 108
                 789*********************99999899988865555666444444444333332578899**************************.******* PP

         UAA  94 ifrssklipvmilGililgkrYsllqylsvllltlGviiftllsakdkkedskeslnkfllGiallvlallldavlglvqeklykkygk.......... 182
                 + +s+k++pvmi Gi++ gk+Y+  +yl+v+ +t+Gv+if +       +++k   ++++ G++l++ +l++dav++ +q+++  k +k          
  KOO22675.1 109 LGKSCKMVPVMIGGIVLGGKKYTAGEYLTVFTITAGVVIFNFG-----GQEKKGGATDSTYGMLLIFASLVFDAVTSGLQDSAKAKTKKlnpgiekaep 202
                 ******************************************3.....34567788999**********************987666543323332221 PP

         UAA 183 hskealfyshllslplfl...llqgellsavkflsesedvallslpsklfylllnvltqyvcikgVlilisefgaltvtlvltlRKfvslllSill.Fk 277
                 +  e++fy++l + ++ l    ++g++ + + f+s++++v+        + +l+++l++++++ +++++i+efg l +++v+t+RK+ s l Si    +
  KOO22675.1 203 TMFESMFYTNLSGSVVALalgAVAGQIGQGIGFCSAHPEVM--------TAILFYSLASAMGQLFIYYTIAEFGPLLLATVTTTRKVFSTLYSIFRdPT 293
                 4449**************99999******************........9*******************************************976358 PP

         UAA 278 npltlqhlvgtllVflglllysy 300
                 n+l++q++ g + Vf+g++ +++
  KOO22675.1 294 NKLSMQQWSGCAAVFVGIAFEVL 316
                 ******************98876 PP

>> DUF2619  Protein of unknown function (DUF2619)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.3   0.2    0.0033        20      26      39 ..      56      69 ..      45      84 .. 0.88
   2 ?   -3.8   0.1       2.5   1.5e+04      59      68 ..     138     147 ..     135     148 .. 0.70
   3 ?   11.3   0.1   4.5e-05      0.27       3      44 ..     236     277 ..     234     283 .. 0.94

  Alignments for each domain:
  == domain 1  score: 5.3 bits;  conditional E-value: 0.0033
     DUF2619 26 kiNalLalvGPlvl 39
                +iNa+Lal+G lvl
  KOO22675.1 56 AINAVLALIGMLVL 69
                69********9998 PP

  == domain 2  score: -3.8 bits;  conditional E-value: 2.5
     DUF2619  59 lllillGval 68 
                 +++i++Gv++
  KOO22675.1 138 VFTITAGVVI 147
                 5678888875 PP

  == domain 3  score: 11.3 bits;  conditional E-value: 4.5e-05
     DUF2619   3 lSaliEltaAllmlklndvekalkiNalLalvGPlvlilvtt 44 
                  Sa  E++ A+l++ l++    l i  ++a  GPl l +vtt
  KOO22675.1 236 CSAHPEVMTAILFYSLASAMGQLFIYYTIAEFGPLLLATVTT 277
                 69999*********************************9997 PP

>> Phage_holin_1  Bacteriophage holin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.1   0.1      0.21   1.2e+03      38      57 ..      35      63 ..      12      91 .. 0.61
   2 ?    7.6   0.0    0.0009       5.4      52      77 ..     167     190 ..     135     193 .. 0.81
   3 ?    0.2   0.1      0.19   1.1e+03      24      65 ..     251     293 ..     205     296 .. 0.55

  Alignments for each domain:
  == domain 1  score: 0.1 bits;  conditional E-value: 0.21
  Phage_holin_1 38 aklaeqllqivs.........avlsllaa 57
                   +k +eq  ++           a+ ++la+
     KOO22675.1 35 KKYGEQGEKFSAtllaifverAINAVLAL 63
                   44555555544422222223333333333 PP

  == domain 2  score: 7.6 bits;  conditional E-value: 0.0009
  Phage_holin_1  52 lsllaalGvvvDPttkgisDSeralt 77 
                    l ++a l  v D  t+g++DS++a t
     KOO22675.1 167 LLIFASL--VFDAVTSGLQDSAKAKT 190
                    4556666..8*************987 PP

  == domain 3  score: 0.2 bits;  conditional E-value: 0.19
  Phage_holin_1  24 ilavlglfgldltvaklaeqllqivsavlsllaal.GvvvDPt 65 
                    + +++g   + +t+a+ +  ll++v++   ++++l  +  DPt
     KOO22675.1 251 LASAMGQLFIYYTIAEFGPLLLATVTTTRKVFSTLySIFRDPT 293
                    3333333444444445555555555533333333312356666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (331 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       697  (0.0388756); expected 358.6 (0.02)
Passed bias filter:                      412  (0.0229795); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.45u 0.25s 00:00:00.70 Elapsed: 00:00:00.38
# Mc/sec: 2618.02
//
Query:       KOO22676.1  [L=318]
Description: calmodulin-related protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    7.9e-31  103.3  15.6    3.5e-06   26.5   0.6    5.4  5  EF-hand_6     EF-hand domain
    8.4e-28   93.8  16.6    3.9e-06   26.0   0.2    5.3  5  EF-hand_1     EF hand
    7.3e-24   84.0  12.2    4.5e-10   39.8   0.1    3.7  4  EF-hand_7     EF-hand domain pair
    1.5e-21   76.0   4.2    1.1e-06   28.3   0.2    3.8  3  EF-hand_8     EF-hand domain pair
      4e-17   60.9  21.0    3.9e-05   22.9   0.3    5.3  5  EF-hand_5     EF hand
     0.0042   17.0   1.8         32    4.4   0.1    4.6  5  Caleosin      Caleosin related protein
  ------ inclusion threshold ------
      0.019   15.3   4.9        4.6    7.6   1.4    3.7  3  SPARC_Ca_bdg  Secreted protein acidic and rich in cysteine Ca
      0.032   14.6   0.5         15    6.0   0.0    3.8  4  EF-hand_14    EF-hand domain
      0.033   14.4   0.7         20    5.4   0.0    3.3  3  DUF2666       Protein of unknown function (DUF2666)
      0.094   13.1   0.3          3    8.2   0.1    2.9  2  DUF1456       Protein of unknown function (DUF1456)
        1.3    9.1   7.3         26    4.9   0.0    4.3  5  Sigma70_r1_1  Sigma-70 factor, region 1.1


Domain annotation for each model (and alignments):
>> EF-hand_6  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.4   0.1     2e-07   0.00033       3      28 ..      14      39 ..      12      49 .. 0.90
   2 !   24.9   0.1   6.9e-09   1.1e-05       2      31 .]      64      92 ..      63      92 .. 0.93
   3 !   18.1   0.0   1.1e-06    0.0017       2      28 ..     100     126 ..      99     135 .. 0.87
   4 !   20.8   0.6   1.5e-07   0.00024       4      31 .]     199     225 ..     196     225 .. 0.91
   5 !   26.5   0.6   2.1e-09   3.5e-06       2      30 ..     233     260 ..     232     266 .. 0.90

  Alignments for each domain:
  == domain 1  score: 20.4 bits;  conditional E-value: 2e-07
   EF-hand_6  3 reaFklfDkdgdGkidaeElrkalrk 28
                +++F++fD+dg G i + El ++lr+
  KOO22676.1 14 DAIFDEFDNDGGGLIEFRELHRCLRQ 39
                689**********************6 PP

  == domain 2  score: 24.9 bits;  conditional E-value: 6.9e-09
   EF-hand_6  2 lreaFklfDkdgdGkidaeElrkalrkalg 31
                + ++Fk++D d +G+ida+E+ +a++ alg
  KOO22676.1 64 VIDLFKAWDEDESGFIDAKEFGRAIK-ALG 92
                5799*********************9.887 PP

  == domain 3  score: 18.1 bits;  conditional E-value: 1.1e-06
   EF-hand_6   2 lreaFklfDkdgdGkidaeElrkalrk 28 
                 + ++Fk +D dg+G++ ++El k lrk
  KOO22676.1 100 IAAVFKSMDADGSGQLEYKELNKKLRK 126
                 6689*****************998886 PP

  == domain 4  score: 20.8 bits;  conditional E-value: 1.5e-07
   EF-hand_6   4 eaFklfDkdgdGkidaeElrkalrkalg 31 
                 ++F+ +D d +G++d++E+r+a+  alg
  KOO22676.1 199 DLFRDWDDDQNGFVDKKEFRRAIF-ALG 225
                 79*******************998.776 PP

  == domain 5  score: 26.5 bits;  conditional E-value: 2.1e-09
   EF-hand_6   2 lreaFklfDkdgdGkidaeElrkalrkal 30 
                 ++++F+ +Dkd++G+id++El k+lr  +
  KOO22676.1 233 VNAVFDDLDKDKSGQIDYQELNKVLR-RG 260
                 6789**********************.45 PP

>> EF-hand_1  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.5   0.2   1.3e-07   0.00022       2      27 ..      13      38 ..      12      40 .. 0.93
   2 !   19.3   0.2   3.4e-07   0.00056       3      29 .]      65      91 ..      63      91 .. 0.91
   3 !   16.6   0.0   2.4e-06    0.0039       1      22 [.      99     120 ..      99     122 .. 0.91
   4 !   20.3   0.6   1.6e-07   0.00027       3      26 ..     198     221 ..     196     224 .. 0.89
   5 !   26.0   0.2   2.4e-09   3.9e-06       2      28 ..     233     259 ..     232     260 .. 0.92

  Alignments for each domain:
  == domain 1  score: 20.5 bits;  conditional E-value: 1.3e-07
                HHHHHHHHTTTSSSEEEHHHHHHHHH CS
   EF-hand_1  2 lkeiFrefDkDgdGkIdfeEfkellk 27
                ++ iF+efD Dg G I+f E+ ++l+
  KOO22676.1 13 VDAIFDEFDNDGGGLIEFRELHRCLR 38
                799********************998 PP

  == domain 2  score: 19.3 bits;  conditional E-value: 3.4e-07
                HHHHHHHTTTSSSEEEHHHHHHHHHHH CS
   EF-hand_1  3 keiFrefDkDgdGkIdfeEfkellkkl 29
                 ++F+  D D +G+Id +Ef +++k+l
  KOO22676.1 65 IDLFKAWDEDESGFIDAKEFGRAIKAL 91
                579********************9975 PP

  == domain 3  score: 16.6 bits;  conditional E-value: 2.4e-06
                 HHHHHHHHHTTTSSSEEEHHHH CS
   EF-hand_1   1 elkeiFrefDkDgdGkIdfeEf 22 
                 e+  +F+ +D Dg+G+++++E+
  KOO22676.1  99 EIAAVFKSMDADGSGQLEYKEL 120
                 67789****************8 PP

  == domain 4  score: 20.3 bits;  conditional E-value: 1.6e-07
                 HHHHHHHTTTSSSEEEHHHHHHHH CS
   EF-hand_1   3 keiFrefDkDgdGkIdfeEfkell 26 
                  ++Fr+ D D++G++d++Ef++++
  KOO22676.1 198 SDLFRDWDDDQNGFVDKKEFRRAI 221
                 689******************987 PP

  == domain 5  score: 26.0 bits;  conditional E-value: 2.4e-09
                 HHHHHHHHTTTSSSEEEHHHHHHHHHH CS
   EF-hand_1   2 lkeiFrefDkDgdGkIdfeEfkellkk 28 
                 ++ +F+++DkD++G+Id++E+ ++l++
  KOO22676.1 233 VNAVFDDLDKDKSGQIDYQELNKVLRR 259
                 7899******************99986 PP

>> EF-hand_7  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   0.1   3.8e-06    0.0063       3      62 ..      12      66 ..      10      67 .. 0.83
   2 !   39.8   0.1   2.8e-13   4.5e-10       5      68 ..      65     122 ..      61     125 .. 0.93
   3 !   32.3   3.7   6.3e-11     1e-07       6      69 ..     199     256 ..     194     258 .. 0.90
   4 !   21.5   0.2   1.4e-07   0.00023       5      42 ..     234     266 ..     230     285 .. 0.83

  Alignments for each domain:
  == domain 1  score: 16.9 bits;  conditional E-value: 3.8e-06
   EF-hand_7  3 klkeaFkelDtdgdgyldkeellrllrkifqgagegsklsdeelellfkefDtdkdGvis 62
                ++  +F+e+D+dg g ++ +el+r lr+     g    ++++ +++     D ++ +vi+
  KOO22676.1 12 QVDAIFDEFDNDGGGLIEFRELHRCLRQ-----GSSIAVTRKLVQTEAAAEDRSSTRVID 66
                66678****************9999998.....888888888888888888887777776 PP

  == domain 2  score: 39.8 bits;  conditional E-value: 2.8e-13
   EF-hand_7   5 keaFkelDtdgdgyldkeellrllrkifqgagegsklsdeelellfkefDtdkdGvisfdEFlk 68 
                  + Fk+ D d +g++d  e+ r+++        g++ s+ee+ ++fk +D d++G++ + E+ k
  KOO22676.1  65 IDLFKAWDEDESGFIDAKEFGRAIK------ALGFEASKEEIAAVFKSMDADGSGQLEYKELNK 122
                 678**********************......9*****************************987 PP

  == domain 3  score: 32.3 bits;  conditional E-value: 6.3e-11
   EF-hand_7   6 eaFkelDtdgdgyldkeellrllrkifqgagegsklsdeelellfkefDtdkdGvisfdEFlkl 69 
                 + F+  D d++g++dk e++r++         g k +   + ++f+++D+dk+G+i+++E+ k 
  KOO22676.1 199 DLFRDWDDDQNGFVDKKEFRRAIF------ALGYKADAADVNAVFDDLDKDKSGQIDYQELNKV 256
                 689***************998887......8999988899********************9886 PP

  == domain 4  score: 21.5 bits;  conditional E-value: 1.4e-07
   EF-hand_7   5 keaFkelDtdgdgyldkeellrllrkifqgagegskls 42 
                   +F+ lD+d++g +d++el ++lr+     g + +l+
  KOO22676.1 234 NAVFDDLDKDKSGQIDYQELNKVLRR-----GGDMELD 266
                 568**********************8.....6666554 PP

>> EF-hand_8  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.5   0.0   4.7e-08   7.6e-05      14      53 ..       1      38 [.       1      40 [. 0.93
   2 !   28.3   0.2   6.9e-10   1.1e-06       1      47 [.      75     119 ..      64     121 .. 0.96
   3 !   24.5   0.3   1.1e-08   1.8e-05       2      48 ..     209     253 ..     197     259 .. 0.93

  Alignments for each domain:
  == domain 1  score: 22.5 bits;  conditional E-value: 4.7e-08
   EF-hand_8 14 lrilglkkglseeevdilfrefDtdgdGkisfeEFcvlle 53
                +r+lgl+     e+vd++f+efD dg G i f E + +l 
  KOO22676.1  1 MRALGLQ--APSEQVDAIFDEFDNDGGGLIEFRELHRCLR 38
                5788***..9**************************9985 PP

  == domain 2  score: 28.3 bits;  conditional E-value: 6.9e-10
   EF-hand_8   1 ekgkItreelrrilrilglkkglseeevdilfrefDtdgdGkisfeE 47 
                 e+g I+  e+ r++++lg +   s+ee+ ++f+ +D dg+G + ++E
  KOO22676.1  75 ESGFIDAKEFGRAIKALGFE--ASKEEIAAVFKSMDADGSGQLEYKE 119
                 589***********999***..*********************9999 PP

  == domain 3  score: 24.5 bits;  conditional E-value: 1.1e-08
   EF-hand_8   2 kgkItreelrril.rilglkkglseeevdilfrefDtdgdGkisfeEF 48 
                 +g +++ e+rr++ ++ g+k    + +v ++f+ +D d++G i++ E 
  KOO22676.1 209 NGFVDKKEFRRAIfAL-GYK--ADAADVNAVFDDLDKDKSGQIDYQEL 253
                 799**********665.***..***********************996 PP

>> EF-hand_5  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.7   0.2   0.00076       1.2       2      24 ..      14      36 ..      13      37 .. 0.88
   2 !   13.5   0.5   2.3e-05     0.037       2      23 ..      65      86 ..      64      89 .. 0.89
   3 !   15.9   0.0     4e-06    0.0065       2      23 ..     101     122 ..     100     124 .. 0.88
   4 !   11.3   1.5   0.00011      0.18       3      23 ..     199     219 ..     197     222 .. 0.91
   5 !   22.9   0.3   2.4e-08   3.9e-05       2      24 ..     234     256 ..     233     257 .. 0.92

  Alignments for each domain:
  == domain 1  score: 8.7 bits;  conditional E-value: 0.00076
                HHHHHHH-SS-SSCE-HHHHHHH CS
   EF-hand_5  2 kdtFqaiDlNgDGkIskeELktl 24
                ++ F+++D +g G I + EL ++
  KOO22676.1 14 DAIFDEFDNDGGGLIEFRELHRC 36
                569*****************875 PP

  == domain 2  score: 13.5 bits;  conditional E-value: 2.3e-05
                HHHHHHH-SS-SSCE-HHHHHH CS
   EF-hand_5  2 kdtFqaiDlNgDGkIskeELkt 23
                 d+F+a D + +G+I++ E+ +
  KOO22676.1 65 IDLFKAWDEDESGFIDAKEFGR 86
                589*****************76 PP

  == domain 3  score: 15.9 bits;  conditional E-value: 4e-06
                 HHHHHHH-SS-SSCE-HHHHHH CS
   EF-hand_5   2 kdtFqaiDlNgDGkIskeELkt 23 
                  ++F+ +D++g+G++   EL +
  KOO22676.1 101 AAVFKSMDADGSGQLEYKELNK 122
                 689****************965 PP

  == domain 4  score: 11.3 bits;  conditional E-value: 0.00011
                 HHHHHH-SS-SSCE-HHHHHH CS
   EF-hand_5   3 dtFqaiDlNgDGkIskeELkt 23 
                 d+F+  D ++ G+++k E+++
  KOO22676.1 199 DLFRDWDDDQNGFVDKKEFRR 219
                 789999*************97 PP

  == domain 5  score: 22.9 bits;  conditional E-value: 2.4e-08
                 HHHHHHH-SS-SSCE-HHHHHHH CS
   EF-hand_5   2 kdtFqaiDlNgDGkIskeELktl 24 
                 +++F+ +D++++G+I+ +EL ++
  KOO22676.1 234 NAVFDDLDKDKSGQIDYQELNKV 256
                 899*****************987 PP

>> Caleosin  Caleosin related protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.1   0.0       0.1   1.7e+02      93     121 ..      11      39 ..       8      48 .. 0.82
   2 ?    4.4   0.1     0.019        32      13      41 ..      71      99 ..      62     109 .. 0.85
   3 ?    2.2   0.0     0.092   1.5e+02      94     125 ..      99     130 ..      95     154 .. 0.80
   4 ?    2.0   0.1      0.11   1.7e+02      13      40 ..     204     231 ..     200     237 .. 0.85
   5 ?    2.6   0.0     0.072   1.2e+02      94     128 ..     232     267 ..     227     292 .. 0.78

  Alignments for each domain:
  == domain 1  score: 2.1 bits;  conditional E-value: 0.1
    Caleosin  93 qkfeeifskyakekkdaltlkevlellkg 121
                 ++ ++if++++++  + ++++e+ ++l++
  KOO22676.1  11 EQVDAIFDEFDNDGGGLIEFRELHRCLRQ 39 
                 57789999999999999999999988876 PP

  == domain 2  score: 4.4 bits;  conditional E-value: 0.019
    Caleosin 13 fDrdkdGiiypldtyrgfralgfnvllsl 41
                +D+d+ G+i   +  r+++algf++    
  KOO22676.1 71 WDEDESGFIDAKEFGRAIKALGFEASKEE 99
                ***********************986555 PP

  == domain 3  score: 2.2 bits;  conditional E-value: 0.092
    Caleosin  94 kfeeifskyakekkdaltlkevlellkgqrea 125
                 +  ++f+  +++ +++l++ke+++ l++ +e+
  KOO22676.1  99 EIAAVFKSMDADGSGQLEYKELNKKLRKSMEL 130
                 56789*******************99998775 PP

  == domain 4  score: 2.0 bits;  conditional E-value: 0.11
    Caleosin  13 fDrdkdGiiypldtyrgfralgfnvlls 40 
                 +D d++G++   +  r++ alg+++ ++
  KOO22676.1 204 WDDDQNGFVDKKEFRRAIFALGYKADAA 231
                 9********************9987655 PP

  == domain 5  score: 2.6 bits;  conditional E-value: 0.072
    Caleosin  94 kfeeifskyakekkdaltlkevlellkgqrea.lDl 128
                   +++f+  +k+k++++ ++e++++l++  ++ lD+
  KOO22676.1 232 DVNAVFDDLDKDKSGQIDYQELNKVLRRGGDMeLDP 267
                 56899******************9998654443555 PP

>> SPARC_Ca_bdg  Secreted protein acidic and rich in cysteine Ca binding region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.0       2.4   3.8e+03      92     113 .]      15      36 ..       8      36 .. 0.67
   2 ?    5.7   0.1     0.011        18      43     110 ..      51     120 ..      30     123 .. 0.72
   3 ?    7.6   1.4    0.0028       4.6      36     110 ..     177     253 ..     147     256 .. 0.74

  Alignments for each domain:
  == domain 1  score: -1.8 bits;  conditional E-value: 2.4
  SPARC_Ca_bdg  92 pflescDadkdkkislkEwceC 113
                   + +++ D d  + i+ +E  +C
    KOO22676.1  15 AIFDEFDNDGGGLIEFRELHRC 36 
                   5566777777777777777666 PP

  == domain 2  score: 5.7 bits;  conditional E-value: 0.011
  SPARC_Ca_bdg  43 keeeknlkeckepvawkFsklDtnsdkvlsksELaplrapl..vklehCikpflescDadkdkkislkEw 110
                   ++e    ++ ++ v   F+ +D ++ ++++ +E     + l      + i++ ++s Dad  ++++ kE 
    KOO22676.1  51 QTEAAAEDRSSTRVIDLFKAWDEDESGFIDAKEFGRAIKALgfEASKEEIAAVFKSMDADGSGQLEYKEL 120
                   4555556666677777899999999999999998654443422455667889999999999999988885 PP

  == domain 3  score: 7.6 bits;  conditional E-value: 0.0028
  SPARC_Ca_bdg  36 hleelekkeeeknlkeckepvawkFsklDtnsdkvlsksELaplrapl.vkle.hCikpflescDadkdkkislkEw 110
                   +++++++++ ++ l+e +  v   F ++D +++++++k+E +     l  k +   +++ ++  D dk ++i+ +E 
    KOO22676.1 177 TSDKTVAEQLKDILNENSVRVSDLFRDWDDDQNGFVDKKEFRRAIFALgYKADaADVNAVFDDLDKDKSGQIDYQEL 253
                   55667777778888888888888999999999999999999876666623333134788999999999999999985 PP

>> EF-hand_14  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.4   0.0      0.25     4e+02       3      28 ..      14      39 ..      12      41 .. 0.90
   2 ?    2.1   0.0      0.15   2.4e+02       5      53 ..      67     115 ..      63     151 .. 0.67
   3 ?   -1.4   0.0       1.9   3.1e+03      54      72 ..     203     221 ..     177     224 .. 0.54
   4 ?    6.0   0.0    0.0091        15       4      38 ..     235     269 ..     232     296 .. 0.88

  Alignments for each domain:
  == domain 1  score: 1.4 bits;  conditional E-value: 0.25
  EF-hand_14  3 dllfdlfkdeetdklsvakllkaLae 28
                d++fd f++++ + +++ +l + L++
  KOO22676.1 14 DAIFDEFDNDGGGLIEFRELHRCLRQ 39
                99*********9****9999998876 PP

  == domain 2  score: 2.1 bits;  conditional E-value: 0.15
  EF-hand_14   5 lfdlfkdeetdklsvakllkaLaetGirkdDpRLkellkklkkvekeks 53 
                 lf+ ++++e++ +  +++ +a+++ G + +   ++ ++k +      + 
  KOO22676.1  67 LFKAWDEDESGFIDAKEFGRAIKALGFEASKEEIAAVFKSMDADGSGQL 115
                 5666667777777888888888888887777777777777665444433 PP

  == domain 3  score: -1.4 bits;  conditional E-value: 1.9
  EF-hand_14  54 eaeesetleldretFkkcv 72 
                 +  + ++  +d+++F++ +
  KOO22676.1 203 DWDDDQNGFVDKKEFRRAI 221
                 3344455667777777665 PP

  == domain 4  score: 6.0 bits;  conditional E-value: 0.0091
  EF-hand_14   4 llfdlfkdeetdklsvakllkaLaetGirkdDpRL 38 
                 ++fd +++++++++  ++l k+L+  G  + Dp L
  KOO22676.1 235 AVFDDLDKDKSGQIDYQELNKVLRRGGDMELDPSL 269
                 79*************************99999977 PP

>> DUF2666  Protein of unknown function (DUF2666)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.4   0.0     0.012        20      54     107 ..      11      64 ..       6      70 .. 0.89
   2 ?    5.0   0.4     0.017        27      51      80 ..     228     257 ..     143     261 .. 0.72
   3 ?    4.8   0.1     0.018        30      51      82 ..     228     259 ..     225     294 .. 0.88

  Alignments for each domain:
  == domain 1  score: 5.4 bits;  conditional E-value: 0.012
                 HHHHHHTTT--S--S....HHHHHHHHHHHHT-.............---HHHHH CS
     DUF2666  54 ekleeiadeikkkkkgrvkeedisevleklkspattkklnkitdskegkeilkv 107
                 e++ +i+de+ +   g ++  ++++ l++  s a t+kl + ++  e +  ++v
  KOO22676.1  11 EQVDAIFDEFDNDGGGLIEFRELHRCLRQGSSIAVTRKLVQTEAAAEDRSSTRV 64 
                 7899***********************************999988887776666 PP

  == domain 2  score: 5.0 bits;  conditional E-value: 0.017
                 --HHHHHHHTTT--S--S....HHHHHHHH CS
     DUF2666  51 fDlekleeiadeikkkkkgrvkeedisevl 80 
                  D  ++++++d++ k k g++  +++++vl
  KOO22676.1 228 ADAADVNAVFDDLDKDKSGQIDYQELNKVL 257
                 355566666666666666666666666665 PP

  == domain 3  score: 4.8 bits;  conditional E-value: 0.018
                 --HHHHHHHTTT--S--S....HHHHHHHHHH CS
     DUF2666  51 fDlekleeiadeikkkkkgrvkeedisevlek 82 
                  D  ++++++d++ k k g++  +++++vl++
  KOO22676.1 228 ADAADVNAVFDDLDKDKSGQIDYQELNKVLRR 259
                 5888999*********************9976 PP

>> DUF1456  Protein of unknown function (DUF1456)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.2   0.1    0.0019         3      21      56 ..      86     121 ..      79     128 .. 0.78
   2 ?    1.5   0.0      0.23   3.8e+02      24      59 ..     223     257 ..     212     259 .. 0.84

  Alignments for each domain:
  == domain 1  score: 8.2 bits;  conditional E-value: 0.0019
     DUF1456  21 eifklggvevtkeelsalLkkedeegyeeckdqvLe 56 
                 + +k+ g+e +kee+ a++k  d +g  +++ + L+
  KOO22676.1  86 RAIKALGFEASKEEIAAVFKSMDADGSGQLEYKELN 121
                 678999***************888877666666655 PP

  == domain 2  score: 1.5 bits;  conditional E-value: 0.23
     DUF1456  24 klggvevtkeelsalLkkedeegyeeckdqvLesFL 59 
                 +l g++ + ++++a++   d+++  +++ q L++ L
  KOO22676.1 223 AL-GYKADAADVNAVFDDLDKDKSGQIDYQELNKVL 257
                 43.789999*********999999999999998887 PP

>> Sigma70_r1_1  Sigma-70 factor, region 1.1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.0         5   8.1e+03      36      48 ..      10      22 ..       8      24 .. 0.79
   2 ?    4.9   0.0     0.016        26      17      35 ..     112     131 ..      94     136 .. 0.79
   3 ?   -1.2   0.1       1.4   2.2e+03       9      17 ..     147     155 ..     141     157 .. 0.85
   4 ?    0.7   0.1      0.34   5.5e+02      38      62 ..     182     206 ..     172     217 .. 0.76
   5 ?    4.3   0.0     0.025        41      16      30 ..     244     261 ..     240     288 .. 0.76

  Alignments for each domain:
  == domain 1  score: -3.0 bits;  conditional E-value: 5
                  HHHHHHHHHHHHC CS
  Sigma70_r1_1 36 seqiediiemLed 48
                  seq++ i++ +++
    KOO22676.1 10 SEQVDAIFDEFDN 22
                  7999999998876 PP

  == domain 2  score: 4.9 bits;  conditional E-value: 0.016
                   HSCEEHHHHHHHGC.CSS-- CS
  Sigma70_r1_1  17 kGyLtyeEindaLp.ddeld 35 
                    G+L+y+E+n+ L  ++eld
    KOO22676.1 112 SGQLEYKELNKKLRkSMELD 131
                   488**********7455555 PP

  == domain 3  score: -1.2 bits;  conditional E-value: 1.4
                   HHHHHHHHH CS
  Sigma70_r1_1   9 eLikkgKkk 17 
                   e+i+kgK+k
    KOO22676.1 147 EMIAKGKEK 155
                   79*****98 PP

  == domain 4  score: 0.7 bits;  conditional E-value: 0.34
                   HHHHHHHHHHCCT-EEE-SS-.... CS
  Sigma70_r1_1  38 qiediiemLedmgIdvveeaedede 62 
                     e++ ++L+++ ++v +   d d+
    KOO22676.1 182 VAEQLKDILNENSVRVSDLFRDWDD 206
                   568888999******9999885555 PP

  == domain 5  score: 4.3 bits;  conditional E-value: 0.025
                   HHSCEEHHHHHHHG...C CS
  Sigma70_r1_1  16 kkGyLtyeEindaL...p 30 
                   k G++ y+E+n++L    
    KOO22676.1 244 KSGQIDYQELNKVLrrgG 261
                   6799**********5542 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (318 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       863  (0.0481343); expected 358.6 (0.02)
Passed bias filter:                      612  (0.0341346); expected 358.6 (0.02)
Passed Vit filter:                        49  (0.002733); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.53u 0.30s 00:00:00.83 Elapsed: 00:00:00.46
# Mc/sec: 2096.69
//
Query:       KOO22677.1  [L=79]
Description: or transport [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.9e-11   42.7   0.0    7.5e-11   42.6   0.0    1.0  1  RbsD_FucU  RbsD / FucU transport protein family


Domain annotation for each model (and alignments):
>> RbsD_FucU  RbsD / FucU transport protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.6   0.0   4.2e-15   7.5e-11      80     134 .]      16      70 ..       6      70 .. 0.83

  Alignments for each domain:
  == domain 1  score: 42.6 bits;  conditional E-value: 4.2e-15
                 HHHHHHHHCCCCCC---EEEE-HHHHHHHGGGCSEEEE.-S--STT--EEEEE--- CS
   RbsD_FucU  80 vleelkellakaeeekeieeveheefkerakkakavvr.TGEttpYaniiLkkGVv 134
                 v+e++ ++l     +  ++ +e+++f+e+ak+a+++v+ +GE++pY++++L+kGVv
  KOO22677.1  16 VHEKVIAALGGWT-KIGVQAIERFDFYEMAKDAYCIVQcSGERRPYGCFLLTKGVV 70 
                 5556666665533.566********************857***************6 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (79 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       335  (0.0186848); expected 358.6 (0.02)
Passed bias filter:                      312  (0.017402); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.24s 00:00:00.60 Elapsed: 00:00:00.40
# Mc/sec: 599.48
//
Query:       KOO22678.1  [L=136]
Description: hypothetical protein Ctob_007802 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (136 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       169  (0.00942607); expected 358.6 (0.02)
Passed bias filter:                      158  (0.00881254); expected 358.6 (0.02)
Passed Vit filter:                        11  (0.000613531); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.25s 00:00:00.59 Elapsed: 00:00:00.38
# Mc/sec: 1082.74
//
Query:       KOO22679.1  [L=126]
Description: sam dependent methyltransferase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    0.00098   19.8   0.0      0.002   18.8   0.0    1.6  2  Methyltransf_25  Methyltransferase domain
  ------ inclusion threshold ------
      0.082   13.6   0.0       0.17   12.6   0.0    1.6  2  Methyltransf_11  Methyltransferase domain


Domain annotation for each model (and alignments):
>> Methyltransf_25  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.8   0.0   2.2e-07     0.002      44      95 ..       8      58 ..       1      59 [. 0.87
   2 ?   -3.1   0.0       1.5   1.4e+04      22      34 ..     102     114 ..      89     119 .. 0.55

  Alignments for each domain:
  == domain 1  score: 18.8 bits;  conditional E-value: 2.2e-07
                     TTTTEEEEESBCCGBSSSTTTEEEEEEESTGGGSSHHHHHHHHHHHHHHEEE CS
  Methyltransf_25 44 eglnvefvqgdaedlpfedgsfDlvvssgalhhlsdedlekalkeiarvLkp 95
                     ++++v+f++g+ae++  ed+ +D+v++++++h ++ + +++++++  r+ ++
       KOO22679.1  8 RRPDVKFEEGNAETWG-EDKCCDVVTVMFGMHEMPADARRRIIRNSLRLARK 58
                     4589***********8.778*************************9999775 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 1.5
                      SEEEEEESSHHHH CS
  Methyltransf_25  22 akvtgvDiseeml 34 
                       ++  +D+ +e +
       KOO22679.1 102 WDLSTIDVVPEHV 114
                      3444455555554 PP

>> Methyltransf_11  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   1.9e-05      0.17      39      91 ..       8      59 ..       1      66 [. 0.82
   2 ?   -2.0   0.0      0.65   5.8e+03      59      59 ..      99      99 ..      68     118 .. 0.56

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 1.9e-05
                     CHHT-EEEETTEECCCTSS-TT-EEEEEEES-CCC-..CCHHHHHHHHHHHEEEE CS
  Methyltransf_11 39 seeglkvefvvadaeklpfednsfDlvvssevlhhv..edpekalkeiaRvLkpg 91
                     ++++  v+f +++ae+   ed+ +D+v++ + +h +  + +++++++  R+ ++ 
       KOO22679.1  8 RRPD--VKFEEGNAETW-GEDKCCDVVTVMFGMHEMpaDARRRIIRNSLRLARKK 59
                     3333..7899*****85.599***************9999********9998875 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 0.65
                     T CS
  Methyltransf_11 59 d 59
                     +
       KOO22679.1 99 S 99
                     2 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (126 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       326  (0.0181828); expected 358.6 (0.02)
Passed bias filter:                      302  (0.0168442); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.35u 0.26s 00:00:00.61 Elapsed: 00:00:00.40
# Mc/sec: 956.07
//
Query:       KOO22680.1  [L=311]
Description: nicotinate-nucleotide adenylyltransferase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.9e-12   47.0   0.0    4.1e-12   46.5   0.0    1.2  1  CTP_transf_like  Cytidylyltransferase-like


Domain annotation for each model (and alignments):
>> CTP_transf_like  Cytidylyltransferase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.5   0.0   2.3e-16   4.1e-12       1     143 []      68     252 ..      68     252 .. 0.80

  Alignments for each domain:
  == domain 1  score: 46.5 bits;  conditional E-value: 2.3e-16
                      EEEE--TT--HHHHHHHHHHHHHSSESEEEEEESSTHCSST-SCSSTHHHHHHHHHHH....TTCTTEEEEEEESEHH..........HHHHHT CS
  CTP_transf_like   1 lagGtFDpiHlGHlrlleqakklleedlivgvpsdeppkkkkkplasaeeRlemlela....kevdevisvdpweltr..........evlkkl 80 
                      ++gG+F+pi+++Hl+++ ++ +    d +++ p+ + p+k     +s  +Rl m++la      +   ++v++ e ++          ++l ++
       KOO22680.1  68 IYGGSFNPITNAHLNVAAEIMHSKLADEVWITPCGRRPDKP-GLKTSMVHRLVMCHLAvdttFGSRFGVKVCDEEADKpqampsivlmRTLAQK 160
                      69**************999887777779***********99.6667889*********65222223344555555555********99777777 PP

                      TTT.EEEEEEEHHHHHHHHCHH.............HHHHHHHHHHHEEEEEE...................HTTCEEEEEEECCTTTCSHHHHH CS
  CTP_transf_like  81 kpd.klylvigadvledfsewk.............eleeilgnvklvvvsrp...................ekqanvllkaekrtngiSstkir 141
                       p+ ++++++gad++  ++ew              + +e + + ++  ++rp                       +     + ++   Sst++r
       KOO22680.1 161 YPEaDFMFACGADQIVRVKEWTapgepgfwdevpdAGQEFFNETHFLLIERPgseladstlpprcslvsaaL---KA-RGSTMIETQLSSTEVR 250
                      7889**************9999999999999999999**************999999999999777653321...22.3333344577999999 PP

                      HH CS
  CTP_transf_like 142 er 143
                      +r
       KOO22680.1 251 NR 252
                      76 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (311 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       250  (0.0139439); expected 358.6 (0.02)
Passed bias filter:                      245  (0.013665); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.24s 00:00:00.67 Elapsed: 00:00:00.39
# Mc/sec: 2406.39
//
Query:       KOO22681.1  [L=221]
Description: hypothetical protein Ctob_007799 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      1e-05   26.1   0.0    1.3e-05   25.7   0.0    1.2  1  GGACT     Gamma-glutamyl cyclotransferase, AIG2-like


Domain annotation for each model (and alignments):
>> GGACT  Gamma-glutamyl cyclotransferase, AIG2-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.7   0.0   7.4e-10   1.3e-05       1     108 [.      38     157 ..      38     172 .. 0.70

  Alignments for each domain:
  == domain 1  score: 25.7 bits;  conditional E-value: 7.4e-10
                 EEESSTTSTTSCCCHHHHCS........ECEEEEEEEECCTBEEEE.......ETTTEEEETTSSE..EEE.EEEEE-HHHHHHHHHCT.TTTTSEEEE CS
       GGACT   1 vFvYGtLkrgepnhqrlllg........arflesgpatlkgyrlyd......lggkypalvpgdge.kVkG.elyevddeelarLDelEpeepseYere 83 
                 +Fv+  L+   ++    ll+        a +++s+pat++gy +++      + ++ p+++p   + ++ G  + +++++el+ +D +    p+ +er 
  KOO22681.1  38 LFVFDVLM--AEEILDALLAvntgstarAGLRQSKPATVHGYGRFClrtedpWLAQLPGALPAGPRvRIDGhLIERLQPRELEVIDLFM---PKPFERL 131
                 57888888..66666666565555554345999************8653223223447777665557****55556678**********...99***** PP

                 EEEEEC......TTS-EEEEEEEEETT..G CS
       GGACT  84 evkvev.....ledgeqveawvYvyageee 108
                  v+         +++e++ea +Yv+++  e
  KOO22681.1 132 VVT--AitengFGGKEEIEALMYVCPQ--E 157
                 444..33588888999*********65..2 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (221 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       291  (0.0162307); expected 358.6 (0.02)
Passed bias filter:                      279  (0.0155614); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.35u 0.24s 00:00:00.59 Elapsed: 00:00:00.36
# Mc/sec: 1823.02
//
Query:       KOO22682.1  [L=155]
Description: hypothetical protein Ctob_007798, partial [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (155 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       335  (0.0186848); expected 358.6 (0.02)
Passed bias filter:                      308  (0.0171789); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.23s 00:00:00.57 Elapsed: 00:00:00.35
# Mc/sec: 1319.70
//
Query:       KOO22683.1  [L=334]
Description: protein serine threonine kinase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.5e-40  139.2   0.0    2.3e-40  138.6   0.0    1.2  1  Pkinase         Protein kinase domain
    8.3e-28   97.4   0.0    1.3e-27   96.7   0.0    1.2  1  Pkinase_Tyr     Protein tyrosine kinase
    1.4e-07   30.6   0.0      2e-07   30.1   0.0    1.1  1  Pkinase_fungal  Fungal protein kinase


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  138.6   0.0   3.9e-44   2.3e-40      79     264 .]       9     188 ..       7     188 .. 0.92

  Alignments for each domain:
  == domain 1  score: 138.6 bits;  conditional E-value: 3.9e-44
                 --TTEBHHHHHHHHSS.--HHHHHHHHHHHHHHHHHHHHTT..EE-SS-SGGGEEEETTTEEEE-SGTTSEESSSSCS.BCTTTSCGGGS-HHHHTTSC CS
     Pkinase  79 yveggeladllerkgs.lseeeakkiakqilegleylHskg..iiHrDlKpeNiLidekgelKitDFGlakelesssk.ltsfvgtseYlAPEvlkene 173
                 ++++g+l d+l++  + ++ee++   ++  l++l+y+H +g  iiHrD+K +N+L+  +g +K++D+G+a +l+s+ +  +s++gt++++APEv+++ +
  KOO22683.1   9 LCPHGSLLDVLRTIEQpFAEEQIALACRDALRALQYMHTQGkgIIHRDVKCANLLLG-DGIVKLADLGIALQLNSTASkRMSMIGTPHWMAPEVVGYGK 106
                 6899********55555*********************77666**************.****************9988799****************** PP

                 BSHHHHHHHHHHHHHHHHHSS-STTTSSHHHHHHHHHHT.HHHHHHHCTSHH...HHHTTS-HHHHHHHHHHT-SSGCCSTTHHHHHTSGGG CS
     Pkinase 174 yskkvDvWslGvilyelltgkppfsgekgkekvekeldq.lekilkilgetkeklpeaseiseeakdllkkllkkdpkkRltaeellqhpyl 264
                 y++ +DvWslG+  +e+  g+pp +          +l+  l  ++ i +e+  +l+++s  s ++ d+l k+l+k++++R++ +e+lqhp++
  KOO22683.1 107 YDARADVWSLGIAAIEMAQGEPPHY----------DLRPiLRVMFAIAKEQPPTLRNPSAASASFNDFLMKMLTKEMTSRPSSTEMLQHPFV 188
                 *************************..........3444344578888888999999*********************************96 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   96.7   0.0   2.2e-31   1.3e-27      82     257 ..       9     184 ..       7     185 .. 0.91

  Alignments for each domain:
  == domain 1  score: 96.7 bits;  conditional E-value: 2.2e-31
                  --TTEBHHHHHHHTCTTTSBHHHHHHHHHHHHHHHHHHHHTT..EEEST-SGGGEEEEETTEEEE-STTTHEETTTSSEEEETTSSTSGGGGS-HHHH CS
  Pkinase_Tyr  82 yvkgGdLlkfLrkkekekltlkdllsfalqvAkGmeyLeskk..lvHrdlaarNvLlsenkvvkisDfGLardiekddeyvkkeeaklpvkWmapEsl 177
                  ++++G+Ll+ Lr+  ++++  +++   + +  ++++y++++   ++Hrd+ + N Ll  + +vk++D G+a ++  +++ +k+ +     +WmapE++
   KOO22683.1   9 LCPHGSLLDVLRTI-EQPFAEEQIALACRDALRALQYMHTQGkgIIHRDVKCANLLLG-DGIVKLADLGIALQL--NSTASKRMSMIGTPHWMAPEVV 102
                  89***********9.***********************986444*************9.89*************..888899999999********** PP

                  HHSEEEHHHHHHHHHHHHHHHHTTSSGTTTTS.HHHHHHHHH..HTTEES-BBTTSBHHHHHHHHHHT-SSGGGS--HHHHHH CS
  Pkinase_Tyr 178 kekkftsksDvWsfGvllwEiftlgespypgl.kneevlekl..kegkrlekpekcpeelyelmkkcweedpeeRptfselve 257
                   ++k+  ++DvWs G+  +E+++ ge p+ +l    +v+ ++  ++   l++p+ ++++++++++k +++++++Rp+ +e+++
   KOO22683.1 103 GYGKYDARADVWSLGIAAIEMAQ-GEPPHYDLrPILRVMFAIakEQPPTLRNPSAASASFNDFLMKMLTKEMTSRPSSTEMLQ 184
                  *********************99.****99996667888888433344699*************************9988865 PP

>> Pkinase_fungal  Fungal protein kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.1   0.0   3.4e-11     2e-07     297     397 ..      20     113 ..      15     116 .. 0.85

  Alignments for each domain:
  == domain 1  score: 30.1 bits;  conditional E-value: 3.4e-11
  Pkinase_fungal 297 kpiekaespkellealrDaIkghrsLflk.agiLHrDiSenNilitdskkegerkglLiDLDlakelsddssesgarertGTleFmaievlkgee 390
                     ++ie+    +++  a+rDa+++++ ++++ +gi+HrD+   N+l+       +    L+DL +a +l+  s++s++   +GT+ +ma ev+  ++
      KOO22683.1  20 RTIEQPFAEEQIALACRDALRALQYMHTQgKGIIHRDVKCANLLLG------DGIVKLADLGIALQLN--STASKRMSMIGTPHWMAPEVVGYGK 106
                     566666667777789************87358*************9......78899***********..78888899***********998777 PP

  Pkinase_fungal 391 HsyrhDL 397
                        r D+
      KOO22683.1 107 YDARADV 113
                     7777665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (334 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       437  (0.0243739); expected 358.6 (0.02)
Passed bias filter:                      380  (0.0211947); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.43u 0.21s 00:00:00.64 Elapsed: 00:00:00.35
# Mc/sec: 2867.39
//
Query:       KOO22684.1  [L=401]
Description: quinone oxidoreductase-like protein chloroplastic-like protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    8.8e-12   45.1   0.0    1.5e-11   44.4   0.0    1.4  1  ADH_zinc_N       Zinc-binding dehydrogenase
    1.7e-11   45.3   0.0      4e-11   44.1   0.0    1.6  1  ADH_zinc_N_2     Zinc-binding dehydrogenase
    1.3e-05   25.0   0.0    2.6e-05   24.1   0.0    1.4  1  ADH_N_2          N-terminal domain of oxidoreductase
     0.0069   16.3   0.0      0.015   15.1   0.0    1.6  1  ADH_N            Alcohol dehydrogenase GroES-like domain
  ------ inclusion threshold ------
      0.087   12.6   0.0       0.14   11.9   0.0    1.3  1  Methyltransf_16  Lysine methyltransferase


Domain annotation for each model (and alignments):
>> ADH_zinc_N  Zinc-binding dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.4   0.0   4.2e-15   1.5e-11       1      90 [.     191     277 ..     191     305 .. 0.85

  Alignments for each domain:
  == domain 1  score: 44.4 bits;  conditional E-value: 4.2e-15
                 HHHHHHHHHHH.HTT-EEEEEESSHHHHHHHHHTTESEEEETTTCHHHHHHHHHTTTSSEEEEEESSCSHHHHHHHHHCEEEEEEEEECSC CS
  ADH_zinc_N   1 gvGlaavqlAk.alGaeviavdsseeklelakklGadevinykeadlverikeltggegvdvvfecvGsgatleaalkllkpgGrlvvvGg 90 
                 g G+ ++qlAk  ++a+ +++  s++++++++++Gade+i+yk+      ++e   ++  d+v++cvG+  t + a+k lkpgG  v++ g
  KOO22684.1 191 GTGTVGLQLAKkVFNATKVTTTTSADNFDYCRSNGADELIDYKT---T-NWWEVVPDGSQDIVYDCVGQSGTGDYAVKKLKPGGSYVTITG 277
                 789********9****77777777778***************44...4.45555556799**************************99865 PP

>> ADH_zinc_N_2  Zinc-binding dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.1   0.0   1.1e-14     4e-11       2     133 .]     225     345 ..     224     345 .. 0.68

  Alignments for each domain:
  == domain 1  score: 44.1 bits;  conditional E-value: 1.1e-14
                   T-SEEEETTSTTHHHHH-TT-EEEEEES-H....HHHH.HHHHHHEEEEEEEEE----.S-EEE-CHHHCTTT-EEEE--GGG...-..-HHHHHHH CS
  ADH_zinc_N_2   2 GAdevidyrtedfeaatggegvDvvldtvg....gealleaslkvlpggGrlvsiggpplsaallkpakkrkgrsvkyeflfsmkas.aqadileel 93 
                   GAde idy+t+++ +++  ++ D+v+d+vg    g    + ++k l++gG +v+i+g     a++ p      ++v+ + ++   ++   a++le+l
    KOO22684.1 225 GADELIDYKTTNWWEVVPDGSQDIVYDCVGqsgtG----DYAVKKLKPGGSYVTITGN---LAIRVP------PGVSQHSFINSDTNlGSANLLEAL 308
                   9********7777778878889********75444....4455556577******972...222222......222223333223331144433333 PP

                   HHHHHHHH----EEEEEEGGGHHHHHHHHHSS--SSEEEE CS
  ADH_zinc_N_2  94 aalieeGklrpvvdrvfpleeaaeAhrylesgrarGKiVl 133
                   a   + + +r++  +++ l+++  A++  ++g+++GK+V+
    KOO22684.1 309 A---SFKDVRMTSLKTYNLSDVDAAFAESATGQVKGKLVI 345
                   3...33558999999************************7 PP

>> ADH_N_2  N-terminal domain of oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.1   0.0   7.1e-09   2.6e-05      14     103 ..      36     123 ..      32     127 .. 0.82

  Alignments for each domain:
  == domain 1  score: 24.1 bits;  conditional E-value: 7.1e-09
     ADH_N_2  14 tesdfeleeeelpelkdGevlvralylSvDPymRgr.mndaksyvepvelgdvmrggavgeVveSknpdfkvGdlVvgllgwqdyavsdgk 103
                 t+ +++   ++lp+ +  evl+++ y Sv P  R   m  +++   p + g+ + g  vg  ++   +++kvGd V+g +g ++++vs  k
  KOO22684.1  36 TPGNMHAWFSNLPSNATCEVLIQVAYSSVNPSDRSPtMAINDH--YPKPAGSDVSGIIVGT-TAGGCKKLKVGDAVWGDIGPNTMTVSGSK 123
                 566666667789999999****************651555555..56789**********8.68899***************999998554 PP

>> ADH_N  Alcohol dehydrogenase GroES-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.0   4.3e-06     0.015       3      62 ..      54     111 ..      52     126 .. 0.86

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 4.3e-06
                 EEEEEEEEEEE-HHHHHHHTTSTTTTSSSSEE---EEEEEEEEES.TT-CS--TT-EEEE- CS
       ADH_N   3 evlikvkaagiCgsDlhilkggkelevklplilGHEivGeveevg.pevkklkvGdrVvve 62 
                 evli+v++++++ sD         ++ ++p   G +++G+++ +   ++kklkvGd V  +
  KOO22684.1  54 EVLIQVAYSSVNPSDRSPTMA---INDHYPKPAGSDVSGIIVGTTaGGCKKLKVGDAVWGD 111
                 8***************88776...78888888********9985526899*******9765 PP

>> Methyltransf_16  Lysine methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0     4e-05      0.14      44     115 ..     177     244 ..     157     257 .. 0.74

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 4e-05
  Methyltransf_16  44 elsklsvlELG..sGtGlvGlavaell.peakviltDleellellkknielnknalkskvkvevLdWgeeleedl 115
                       + ++++l LG   GtG vGl +a+++ + +kv+ t   +  +  ++n +       + + +++ +W e + +d 
       KOO22684.1 177 PMDERTILVLGgsGGTGTVGLQLAKKVfNATKVTTTTSADNFDYCRSNGAD------ELIDYKTTNWWEVV-PDG 244
                      566778888874348***********88********999999998887544......56777777776655.444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (401 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       369  (0.0205812); expected 358.6 (0.02)
Passed bias filter:                      320  (0.0178482); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.46u 0.25s 00:00:00.71 Elapsed: 00:00:00.40
# Mc/sec: 3000.34
//
Query:       KOO22685.1  [L=281]
Description: hypothetical protein Ctob_008849 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
     0.0003   20.8   0.0      0.013   15.5   0.0    2.9  2  TIG       IPT/TIG domain


Domain annotation for each model (and alignments):
>> TIG  IPT/TIG domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.0   7.5e-07     0.013       1      73 [.     104     196 ..     104     205 .. 0.75
   2 ?   -0.4   0.0     0.067   1.2e+03      49      70 ..     232     254 ..     210     267 .. 0.59

  Alignments for each domain:
  == domain 1  score: 15.5 bits;  conditional E-value: 7.5e-07
         TIG   1 PvissisPnsgsasgGttititGtnF..gtnssdssvtiggtpctvta.................svssttlvcttPpgp.sgllnvsvlvdg 73 
                 P + s++P+sg+ + Gt  ti+G  +   + + ++ ++++   +t  a                 +vs+ +l+c++Pp   +g  ++ +l+ +
  KOO22685.1 104 PRLISVFPASGPCASGTVATIRGERLglAIARGEVLLRLHMPRATMRAprsrgeplpstitlsatFVSDRKLTCVLPPSEcTGRATIELLHPD 196
                 67789********************9995555555555555555555555555555555556778*************998888888888877 PP

  == domain 2  score: -0.4 bits;  conditional E-value: 0.067
         TIG  49 ssttlvcttPpgp.sgllnvsvl 70 
                 ++t+l+ +tP+ +  g  +v++ 
  KOO22685.1 232 DETELRILTPSFTeVGAAKVTLA 254
                 55556666665553223333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (281 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       216  (0.0120475); expected 358.6 (0.02)
Passed bias filter:                      194  (0.0108205); expected 358.6 (0.02)
Passed Vit filter:                        10  (0.000557756); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.23s 00:00:00.64 Elapsed: 00:00:00.39
# Mc/sec: 2171.75
//
Query:       KOO22686.1  [L=565]
Description: glucose transporter [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.9e-85  286.4  17.0    4.8e-85  286.1  17.0    1.0  1  Sugar_tr         Sugar (and other) transporter
    3.7e-16   59.0  59.8    6.5e-14   51.6  34.0    1.8  2  MFS_1            Major Facilitator Superfamily
    0.00074   18.5   0.2    0.00074   18.5   0.2    2.4  3  MFS_1_like       MFS_1 like family


Domain annotation for each model (and alignments):
>> Sugar_tr  Sugar (and other) transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  286.1  17.0   8.1e-89   4.8e-85       9     449 ..     102     561 ..      95     564 .. 0.89

  Alignments for each domain:
  == domain 1  score: 286.1 bits;  conditional E-value: 8.1e-89
                 HHHHHHHHHCGGGTHHHHHHHHTSTT--SHHHHHH...HHHHHHHTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH-TTTT..SS-TGG CS
    Sugar_tr   9 gllfgYdtgvigafltllkfaknfglsksksskeessvlsglivsiflvGaiiGslfagllgdrfGRkkslliaavlfvigavlqaaakgk..nsvevl 105
                  ++  +++g++ + ++  ++a++++l    ++  +++  ++l+vsif +Ga+iG+  a +l++ +GR ++++ia++ + +ga++ aaa  +  + v ++
  KOO22686.1 102 AVISSWNFGFMLGSMNTASVAMRETLGIPATAGPDADFVWSLCVSIFCLGALIGCAAAEPLATSLGRSSTIMIASITCTVGAACEAAAAYTgsFGVVLM 200
                 4677799999888888888888899888888888899***************************************************9777889999* PP

                 GGGHHHHHHHHHHHHHHHHHHHHTTS-SCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTSS-TTHHHH.HHHCCHHHHHHHHHHGGGS---HHHHHHTT- CS
    Sugar_tr 106 ivgRvlvGigvGlasvlvPmyisEiApkklRgalvslyqlaitfGilvaaifglglnktsnadgwri.llglqlvpallllilllflPESPrylvekgk 203
                 ivgRvl+G + G+a+v+vP+y++E+Ap++lRg+l++++qla+++  l a+++gl     +  + w++  lg  ++p+ ++l+l+ +l ESP +l   g+
  KOO22686.1 201 IVGRVLTGASSGAATVVVPIYLGELAPPHLRGTLGVMFQLACVLALLTAQTLGLPAFLGTT-SLWPLyILGGVAIPSAVQLLLRPLLVESPAWLAGGGH 298
                 *****************************************************98755555.5798626889999999******************999 PP

                 HH..HHHHHHHHHHHC.........HHHHHHHHHHHHHHHHHHH................HTTHHHHSH...HHHHHHHHHHHHHHTTHHHHHHHTTTH CS
    Sugar_tr 204 ee..eakevlaklrge.........edadrelaeekdsleaeqeee...........kaswkellssktvrqrlligvvlqifqqltGinaimyyspti 280
                 e   +a+++l +lrg+         +    ++ +e d ++ +   +             s++ ll+ k+ r  lli +v++++qq++Gin  +++s+t+
  KOO22686.1 299 EAayQAERILLELRGVgpaeygprrD----AVTKELDHMQLAALGRhaggestggdsGSSIGALLRDKKLRPSLLITLVCAVTQQFSGINNAFNFSSTF 393
                 9889************9987754443....33333333333333335556788999999**************************************** PP

                 HHHSS-THH..HHHHHHHHHHHHHHHHHHHHHHHHS-SHHHHHHHHHHHHHHHHHHH..HHHHTTSS...CHHHHHHHHHHHHHHHTTTTHHHHHHHHH CS
    Sugar_tr 281 fenlglsks..llvtiivgvvnfvatfvaiflvdrfGRRtllllGaagmaicfvilgivalllvakskaasivaivfialfialfalgwgpvpwvlvsE 377
                 +++ g++ s   +v +++ v n+++t+ ++ l+d +GR++l l +a+gm++  v l+  ++l+  ++++ +  a++ ++ f+++f++g+gp+pw+l +E
  KOO22686.1 394 LSQNGIDAStvTIVAVLMNVGNVLITVLSASLMDLAGRKPLILGSALGMSASIVALT--VALTHPGQSWTAPFAVFSVVSFVMCFGVGMGPIPWLLPAE 490
                 *********6666666777778999*******************************9..667777778******************************* PP

                 HSHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHT-HHHHHHHHHHHHHHHHHHHHS--STT--CCCCG CS
    Sugar_tr 378 lfpqsvRskalaiavavnwlanflisllfpiiteaigggyvflvfaglavlfiifvfffvpetkgrtleeie 449
                 lfp++  ++++++ + +nw anf+++l+f  +  a+g g++f++f  +++ f++f +++vpet g+t ++i 
  KOO22686.1 491 LFPPDKVAAGSSFNALCNWGANFIVGLIFLPMSAALG-GMCFVPFLLVLLPFAFFLVLKVPETRGKTVQQIM 561
                 *************************************.*****************************99885 PP

>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.6  34.0   1.1e-17   6.5e-14      13     348 ..     114     511 ..      95     517 .. 0.70
   2 !   21.6  17.8   1.4e-08   8.4e-05       3     176 ..     373     551 ..     368     562 .. 0.67

  Alignments for each domain:
  == domain 1  score: 51.6 bits;  conditional E-value: 1.1e-17
       MFS_1  13 silgpalplalaedlgispse.......igllltlyalgaavaslplGrlsdrfGrrr.vlllglllfalglllllfa....sslwlllvlrvlqGlga 99 
                 +  ++a   a+ e+lgi +++        +l ++++ lga+++   + +l++ +Gr + ++++++++++ +++ ++ a     ++ l++v+rvl+G+ +
  KOO22686.1 114 GSMNTASV-AMRETLGIPATAgpdadfvWSLCVSIFCLGALIGCAAAEPLATSLGRSStIMIASITCTVGAACEAAAAytgsFGVVLMIVGRVLTGASS 211
                 22333333.789999988888888787778899*************************66777776666664444433533344556************ PP

       MFS_1 100 galfpagaaliadwfpkeergraigllsagfslGailgpllgg..llasslgWravfyilaivsllafv.lfllllpeepperkrkspkeee....... 188
                 ga++ ++ +++ +++p+  rg    +++++  l+ + +  lg   +l +     ++ yil++v++ ++v l  ll p    ++++ ++   e       
  KOO22686.1 212 GAATVVVPIYLGELAPPHLRGTLGVMFQLACVLALLTAQTLGLpaFLGTT--SLWPLYILGGVAIPSAVqL--LLRPLLVESPAWLAGGGHEaayqaer 306
                 *****************999999888888777777777444443266633..44679**********9964..55544444444444444444667777 PP

       MFS_1 189 ......................................kgtgpaplvpawkallkdpvlw.illialllfffgfsg....lltllplylqevlglsgll 244
                                                       ++tg+ + ++ ++all+d+ l  +lli+l+++ +  ++    ++ ++ ++  ++ g++ + 
  KOO22686.1 307 illelrgvgpaeygprrdavtkeldhmqlaalgrhaggESTGGDSGSS-IGALLRDKKLRpSLLITLVCAVTQQFSginnAFNFSSTF-LSQNGID-AS 402
                 777777777776666666666666688888888888886666666666.889999998866677777777433333577788888887.9999999.45 PP

       MFS_1 245 laglllallalvgailallagrlsdrlgrrrrlllallllllaalglallavtssavllllvlvl....iGfglgfv.fpsllalasdlappeeagtas 338
                 +++++  l+ ++++ + +l++ l+d  gr++ +l + l+++++ ++l ++ +   +++++ + v+    + +++g+   p+ + l ++l+pp++ ++ s
  KOO22686.1 403 TVTIVAVLMNVGNVLITVLSASLMDLAGRKPLILGSALGMSASIVALTVALTHPGQSWTAPFAVFsvvsFVMCFGVGmGPIPWLLPAELFPPDKVAAGS 501
                 555555555555555599***********99999999999999988888888855555554333333335553333338999***************** PP

       MFS_1 339 glfntagslg 348
                 +++ +++  +
  KOO22686.1 502 SFNALCNWGA 511
                 9999887555 PP

  == domain 2  score: 21.6 bits;  conditional E-value: 1.4e-08
       MFS_1   3 laaflsalarsilgpalpl.alaedlgispseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllllfa.........sslwlllvl 91 
                 ++a+   ++  + ++++++ +l ++ gi++s++ ++++l  +g ++ +++ ++l+d  Gr++++l ++l++++++++l++a         +++ ++ v+
  KOO22686.1 373 VCAVTQQFSGINNAFNFSStFL-SQNGIDASTVTIVAVLMNVGNVLITVLSASLMDLAGRKPLILGSALGMSASIVALTVAlthpgqswtAPFAVFSVV 470
                 4455555555557777777455.555************************************************5555543446653332333356666 PP

       MFS_1  92 rvlqGlgagalfpagaaliadwfpkeergraigllsagfslGa.ilgpllggllasslg.Wravfyilaivsllafvlfllllpeep 176
                  +++ +g  ++ p+   l a++fp+++ + + ++ ++++  +  i+g ++ ++ a+++g   ++f+++ + ++++     l+l +++
  KOO22686.1 471 SFVMCFG-VGMGPIPWLLPAELFPPDKVAAGSSFNALCNWGANfIVGLIFLPMSAALGGmCFVPFLLVLLPFAFF-----LVLKVPE 551
                 6666666.58888888999******99999999999988888856666666666655452112233222222222.....2222222 PP

>> MFS_1_like  MFS_1 like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.1   3.8     0.023   1.4e+02     260     356 ..     139     240 ..     136     260 .. 0.80
   2 !   18.5   0.2   1.2e-07   0.00074     228     335 ..     368     480 ..     321     492 .. 0.86
   3 ?   -3.3   0.2      0.49     3e+03     163     202 ..     513     551 ..     503     561 .. 0.54

  Alignments for each domain:
  == domain 1  score: 1.1 bits;  conditional E-value: 0.023
  MFS_1_like 260 tllGslvalgvvaeiplfffaeklleklGhvklliiallayilrfllyaii.....enawlvlpievLhgisfgllwaaaveyvskiapksleatgqgl 353
                 ++++  v + +++ ++    ae l   lG +  ++ia ++ ++     a+        ++l+++  vL g+s g+  +++  y  ++ap++l++t+  +
  KOO22686.1 139 FVWSLCVSIFCLGALIGCAAAEPLATSLGRSSTIMIASITCTVGAACEAAAaytgsFGVVLMIVGRVLTGASSGAATVVVPIYLGELAPPHLRGTLGVM 237
                 7999999999*******************9887777766655554444333366544455566669***************************998666 PP

  MFS_1_like 354 lsg 356
                 ++ 
  KOO22686.1 238 FQL 240
                 654 PP

  == domain 2  score: 18.5 bits;  conditional E-value: 1.2e-07
  MFS_1_like 228 iifllvalilgmswgiienF..lflYLkelgasntllGslvalgvvaeiplfffaeklleklGhvklliiallayilrfllyaii...enawlvlpiev 321
                 +++ lv+++ + ++gi ++F   + +L++ g   +++ ++ +l  v+++ + +++  l++  G   l++ + l + +  + + +       +++ p+ v
  KOO22686.1 368 LLITLVCAVTQQFSGINNAFnfSSTFLSQNGIDASTVTIVAVLMNVGNVLITVLSASLMDLAGRKPLILGSALGMSASIVALTVAlthPGQSWTAPFAV 466
                 5667899999999999876533789*******************************************9888877777777766665677899****** PP

  MFS_1_like 322 Lhgisfgllwaaav 335
                 ++ +sf +++++++
  KOO22686.1 467 FSVVSFVMCFGVGM 480
                 *******9998875 PP

  == domain 3  score: -3.3 bits;  conditional E-value: 0.49
  MFS_1_like 163 fitGilidhysvnllpysallyvlaallvisllvvlilne 202
                 fi+G+++  +s +l ++  ++ +l++ll  ++++vl+++e
  KOO22686.1 513 FIVGLIFLPMSAALGGM-CFVPFLLVLLPFAFFLVLKVPE 551
                 55555555555544332.2333334444445555555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (565 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       547  (0.0305092); expected 358.6 (0.02)
Passed bias filter:                      245  (0.013665); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.59u 0.23s 00:00:00.82 Elapsed: 00:00:00.42
# Mc/sec: 4001.20
//
Query:       KOO22687.1  [L=318]
Description: hypothetical protein Ctob_008847 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.4e-35  123.4   7.9      2e-35  122.8   7.9    1.2  1  Peptidase_C1    Papain family cysteine protease
     0.0059   15.4   0.1     0.0096   14.7   0.1    1.2  1  Peptidase_C1_2  Peptidase C1-like family


Domain annotation for each model (and alignments):
>> Peptidase_C1  Papain family cysteine protease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  122.8   7.9   2.3e-39     2e-35       2     204 ..      49     284 ..      48     296 .. 0.80

  Alignments for each domain:
  == domain 1  score: 122.8 bits;  conditional E-value: 2.3e-39
                   TSCEETTTTTTG..SG---B-T...SSBTHHHHHHHHHHHHHHHHHHS....SS---B-HHHHHHHSTTTSTGGGBB-HHHHHHHHHH..TEBEBTT CS
  Peptidase_C1   2 pesvDwrekgga..vtpvkdqg...sCGsCWafsavgaledrlaiktk....kklvslSeqelvdCskeenegCnGGlmenafeyikk..ggivtek 87 
                   p+++ w +k+g   +t+  +q+    CGsCWa++av+al dr++i+++    ++ v lS q++++C +     C+GG  +  +++i++  ++  t+ 
    KOO22687.1  49 PNDFSWCNKDGVnyCTASLNQHipqYCGSCWAHGAVSALGDRIKIARNgnvgHTDVALSVQHMLNCGN--AGSCHGGSLDGPYQWIHSisSKTGTGI 143
                   77888888544336888889987779********************998888899***********75..679*************99654444454 PP

                   TS....--SSSCS...........................SS-CGCGGGSE.....EBEESEEEEEESSBHHHHHHHHHHHSSEEEEEECCSHHHHT CS
  Peptidase_C1  88 dy....pYkakeg...........................gkCkkkkkkek.....vakikgygkvkenseealkkalakngPvsvaidaseedfql 148
                   +y    pY a ++                           + C              a++ ++g+++    +a++k++ ++gP++++ida      +
    KOO22687.1 144 SYalsqPYLACSSeskegwcehvdstctalntartcgtfgEACV------GlthypNATVAEFGSISG--PDAMQKEIFARGPIACTIDAAP--ITK 230
                   55555577744445678899999999999999844444443343......133334577888888877..599*******************..59* PP

                   EESSEESSTSCETSS-EEEEEEEEEEEET.TEEEEEEE-SBTTTSTBTTEEEEESSS CS
  Peptidase_C1 149 YksGvyketecsktelnhavlivGygven.gkkyWivkNsWgtdwgekGYiriargk 204
                   Y++G+ +e+++ +   +h + +vG+g++  +  yWiv+NsWg+ wge+GY+r++ g 
    KOO22687.1 231 YTGGIATEKSFMT---DHVISVVGWGTDAtEGLYWIVRNSWGEYWGENGYVRVKSGA 284
                   ********87765...***********995678********************9874 PP

>> Peptidase_C1_2  Peptidase C1-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   0.1   1.1e-06    0.0096     352     395 ..     235     278 ..     214     284 .. 0.82

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 1.1e-06
                     HHTTS----.EEEEEEEEEE-TTSSEEEEEEE-SBTTTSTBTTEE CS
  Peptidase_C1_2 352 ldygeslmt.HamvltgvdvdddgkvtkwkvEnsWGedsGekGyf 395
                     +++++s mt H + ++g   d   +   w v nsWGe  Ge+Gy 
      KOO22687.1 235 IATEKSFMTdHVISVVGWGTD-ATEGLYWIVRNSWGEYWGENGYV 278
                     677888776488999999995.556778****************7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (318 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       415  (0.0231469); expected 358.6 (0.02)
Passed bias filter:                      258  (0.0143901); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.46u 0.25s 00:00:00.71 Elapsed: 00:00:00.42
# Mc/sec: 2296.81
//
Query:       KOO22688.1  [L=304]
Description: cre-tyr-3 protein, partial [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.2e-43  146.5  78.3    2.6e-08   34.3   4.5    6.1  6  ShK       ShK domain-like


Domain annotation for each model (and alignments):
>> ShK  ShK domain-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.2   5.0   2.4e-10   4.3e-06       2      38 .]      65     100 ..      64     100 .. 0.94
   2 !   33.6   6.9   2.4e-12   4.3e-08       1      38 []     103     138 ..     103     138 .. 0.98
   3 !   34.3   4.5   1.4e-12   2.6e-08       1      38 []     141     176 ..     141     176 .. 0.97
   4 !   33.6   8.4   2.4e-12   4.3e-08       1      38 []     179     214 ..     179     214 .. 0.99
   5 !   22.1   5.9   8.8e-09   0.00016       2      38 .]     219     254 ..     218     254 .. 0.95
   6 !   28.0   7.7   1.3e-10   2.3e-06       2      38 .]     258     292 ..     257     292 .. 0.98

  Alignments for each domain:
  == domain 1  score: 27.2 bits;  conditional E-value: 2.4e-10
         ShK   2 CtDpssdCaswaalgfCt.nptyrdlmkeqCpktCgfC 38 
                 C D+++d a+wa+ g+C  +++  ++m+e Cp +Cg+C
  KOO22688.1  65 CNDKKTDSANWARDGECAgDNA--KYMAEICPLSCGTC 100
                 99****************7666..9************* PP

  == domain 2  score: 33.6 bits;  conditional E-value: 2.4e-12
         ShK   1 tCtDpssdCaswaalgfCtnptyrdlmkeqCpktCgfC 38 
                 +C D++++C swa++g+C+ ++  d m   Cp++Cg+C
  KOO22688.1 103 SCNDTDVSCGSWAQAGECETNP--DAMLRLCPTSCGLC 138
                 6*********************..************** PP

  == domain 3  score: 34.3 bits;  conditional E-value: 1.4e-12
         ShK   1 tCtDpssdCaswaalgfCtnptyrdlmkeqCpktCgfC 38 
                 +C+D +  C+ w a+g+C+ ++  ++m  +Cp tC  C
  KOO22688.1 141 ECKDLKEECPGWGAAGECNENP--EFMIRNCPVTCEAC 176
                 5*********************..************99 PP

  == domain 4  score: 33.6 bits;  conditional E-value: 2.4e-12
         ShK   1 tCtDpssdCaswaalgfCtnptyrdlmkeqCpktCgfC 38 
                 tC+D  sdC+ w+a g+C +++   +m + Cp +Cg+C
  KOO22688.1 179 TCKDVQSDCPGWTADGECYKNP--GFMYKECPNSCGVC 214
                 7*********************..************** PP

  == domain 5  score: 22.1 bits;  conditional E-value: 8.8e-09
         ShK   2 CtDps.sdCaswaalgfCtnptyrdlmkeqCpktCgfC 38 
                 C D + ++C  wa +g+C  ++    + + Cp +Cg+C
  KOO22688.1 219 CADNNaTQCKIWAEAGECLTNP--LAVMKECPDSCGLC 254
                 998888*************999..99999********* PP

  == domain 6  score: 28.0 bits;  conditional E-value: 1.3e-10
         ShK   2 CtDpssdCaswaalgfCtnptyrdlmkeqCpktCgfC 38 
                 C+D++ +C+ wa+  +C +++  ++m   Cp++Cg+C
  KOO22688.1 258 CMDHDESCRGWAKGSQCDDNK--AFMYRVCPASCGIC 292
                 *********************..************** PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (304 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       691  (0.0385409); expected 358.6 (0.02)
Passed bias filter:                      192  (0.0107089); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.26s 00:00:00.71 Elapsed: 00:00:00.43
# Mc/sec: 2101.03
//
Query:       KOO22689.1  [L=1529]
Description: phospholipase carboxylesterase family protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.7e-72  233.2  50.8    9.5e-06   25.2   0.0   19.4 19  EF-hand_6        EF-hand domain
    6.5e-64  212.3  42.1    2.3e-09   37.6   0.7   12.7 15  EF-hand_7        EF-hand domain pair
    1.2e-63  206.0  71.8    3.3e-05   23.1   0.0   19.1 19  EF-hand_1        EF hand
    4.1e-33  113.0  59.7    1.5e-05   24.8   0.7   16.6 18  EF-hand_8        EF-hand domain pair
    1.5e-32  109.6  70.0      0.015   14.8   0.8   16.7 17  EF-hand_5        EF hand
    6.1e-10   39.3   0.0    1.2e-09   38.3   0.0    1.3  1  Abhydrolase_2    Phospholipase/Carboxylesterase
    7.7e-09   35.9  10.4       0.22   11.7   0.5    6.5  7  p25-alpha        p25-alpha
    0.00071   19.4  16.4        6.5    6.7   0.0    9.6 10  EF-hand_10       EF hand
     0.0015   18.0   0.0     0.0057   16.2   0.0    1.9  2  Peptidase_S9     Prolyl oligopeptidase family
  ------ inclusion threshold ------
      0.011   15.7  13.8         10    6.0   0.0    7.2  9  Caleosin         Caleosin related protein
      0.019   15.3  12.1       0.84   10.0   0.0    6.6  8  SPARC_Ca_bdg     Secreted protein acidic and rich in cysteine
      0.026   14.4  13.7        3.9    7.5   0.0    7.0  6  EF-hand_4        Cytoskeletal-regulatory complex EF hand
      0.043   13.4   0.0      0.085   12.4   0.0    1.4  1  DLH              Dienelactone hydrolase family
      0.071   13.2   0.0       0.57   10.3   0.0    2.2  2  APOBEC3          APOBEC3
       0.14   11.4   0.0       0.26   10.6   0.0    1.3  1  LIP              Secretory lipase
       0.15   11.8  10.4       0.56    9.9   1.7    2.6  2  FRG1             FRG1-like domain
       0.21   11.8   2.7         11    6.3   0.1    3.3  3  DRY_EERY         Alternative splicing regulator
       0.23   11.0   1.1       0.61    9.6   0.0    2.3  3  BPL_LplA_LipB_2  Biotin/lipoate A/B protein ligase family


Domain annotation for each model (and alignments):
>> EF-hand_6  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.1   0.1   3.3e-05     0.033       2      27 ..      10      35 ..       9      44 .. 0.91
   2 !    6.5   0.0    0.0094       9.3       1      18 [.      86     103 ..      86     105 .. 0.89
   3 !   17.9   0.1   2.1e-06    0.0021       2      31 .]     123     151 ..     122     151 .. 0.93
   4 !    8.9   0.0    0.0015       1.5       5      24 ..     162     181 ..     160     190 .. 0.88
   5 !   17.5   0.2   2.6e-06    0.0026       2      27 ..     258     283 ..     257     286 .. 0.88
   6 !   14.8   0.1     2e-05      0.02       3      28 ..     295     320 ..     293     327 .. 0.90
   7 !    7.6   0.0    0.0042       4.2       1      20 [.     388     407 ..     388     410 .. 0.90
   8 !   23.0   0.1   4.8e-08   4.8e-05       2      31 .]     425     453 ..     424     453 .. 0.94
   9 !   12.0   0.0   0.00015      0.15       4      27 ..     463     486 ..     461     489 .. 0.90
  10 ?   -1.8   0.0       4.2   4.2e+03       9      19 ..     505     515 ..     503     516 .. 0.86
  11 !   17.9   0.1     2e-06     0.002       2      31 .]     559     587 ..     558     587 .. 0.90
  12 !   14.7   0.2   2.2e-05     0.022       2      27 ..     595     620 ..     594     623 .. 0.93
  13 ?   -0.5   0.0       1.6   1.6e+03      13      27 ..     645     659 ..     643     661 .. 0.83
  14 !   25.2   0.0   9.5e-09   9.5e-06       2      31 .]     707     735 ..     706     735 .. 0.94
  15 !   10.8   0.0   0.00037      0.37       5      25 ..     746     766 ..     744     771 .. 0.88
  16 !   17.8   0.1   2.2e-06    0.0021       2      27 ..     841     866 ..     840     869 .. 0.87
  17 ?    1.3   0.0      0.44   4.4e+02      14      28 ..     904     918 ..     902     926 .. 0.88
  18 !   23.3   0.1   3.8e-08   3.8e-05       3      31 .]     988    1015 ..     986    1016 .. 0.90
  19 !   18.5   0.3   1.3e-06    0.0013       4      27 ..    1025    1048 ..    1022    1053 .. 0.91

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 3.3e-05
   EF-hand_6  2 lreaFklfDkdgdGkidaeElrkalr 27
                ++++F+ +  dg+G+i +eEl+ al+
  KOO22689.1 10 IDAIFDSMNGDGNGFIEFEELKVALS 35
                7899******************9998 PP

  == domain 2  score: 6.5 bits;  conditional E-value: 0.0094
   EF-hand_6   1 elreaFklfDkdgdGkid 18 
                 el++ F+++D+d++G i 
  KOO22689.1  86 ELKARFDELDVDKTGWIE 103
                 68899**********996 PP

  == domain 3  score: 17.9 bits;  conditional E-value: 2.1e-06
   EF-hand_6   2 lreaFklfDkdgdGkidaeElrkalrkalg 31 
                 l ++F ++D d++G+id+ E+ +a + +lg
  KOO22689.1 123 LVDIFLKWDEDKSGSIDKVEFYRAVK-SLG 151
                 789*********************99.887 PP

  == domain 4  score: 8.9 bits;  conditional E-value: 0.0015
   EF-hand_6   5 aFklfDkdgdGkidaeElrk 24 
                 +Fk +D dg+G + ++El  
  KOO22689.1 162 VFKTLDEDGSGNLEYKELSE 181
                 7****************965 PP

  == domain 5  score: 17.5 bits;  conditional E-value: 2.6e-06
   EF-hand_6   2 lreaFklfDkdgdGkidaeElrkalr 27 
                 l ++F+++D dg+G +d++E+rk + 
  KOO22689.1 258 LIDLFREWDDDGNGALDRKEWRKGFA 283
                 679*******************9887 PP

  == domain 6  score: 14.8 bits;  conditional E-value: 2e-05
   EF-hand_6   3 reaFklfDkdgdGkidaeElrkalrk 28 
                 +++F+ +  +gdG++ + El+kal++
  KOO22689.1 295 DAIFDSMNENGDGFVEFGELKKALSD 320
                 689*********************94 PP

  == domain 7  score: 7.6 bits;  conditional E-value: 0.0042
   EF-hand_6   1 elreaFklfDkdgdGkidae 20 
                 el++ F+ +D+d++G+i+++
  KOO22689.1 388 ELKARFEWLDVDKSGQISMH 407
                 68899************975 PP

  == domain 8  score: 23.0 bits;  conditional E-value: 4.8e-08
   EF-hand_6   2 lreaFklfDkdgdGkidaeElrkalrkalg 31 
                 l ++F+++D d++G++d++E+ ka r alg
  KOO22689.1 425 LVDLFRKWDEDKSGTVDKNEFFKAVR-ALG 453
                 789**********************9.887 PP

  == domain 9  score: 12.0 bits;  conditional E-value: 0.00015
   EF-hand_6   4 eaFklfDkdgdGkidaeElrkalr 27 
                 e+Fk +D dg+G++ ++El+  lr
  KOO22689.1 463 EVFKSLDIDGSGSLEYSELVERLR 486
                 89*****************97666 PP

  == domain 10  score: -1.8 bits;  conditional E-value: 4.2
   EF-hand_6   9 fDkdgdGkida 19 
                  D++++Gk++a
  KOO22689.1 505 VDRSRTGKLTA 515
                 699******97 PP

  == domain 11  score: 17.9 bits;  conditional E-value: 2e-06
   EF-hand_6   2 lreaFklfDkdgdGkidaeElrkalrkalg 31 
                 l ++F+++D dg+G +d++E+rk +  alg
  KOO22689.1 559 LIDLFREWDDDGNGALDRKEWRKGIA-ALG 587
                 689*******************9887.665 PP

  == domain 12  score: 14.7 bits;  conditional E-value: 2.2e-05
   EF-hand_6   2 lreaFklfDkdgdGkidaeElrkalr 27 
                 ++++F+ +  dg+G++ +eEl+ al+
  KOO22689.1 595 IDAIFDSMNEDGNGFVEFEELKTALS 620
                 7899********************97 PP

  == domain 13  score: -0.5 bits;  conditional E-value: 1.6
   EF-hand_6  13 gdGkidaeElrkalr 27 
                 g G++d+eE+  + r
  KOO22689.1 645 GQGSLDFEEFCILVR 659
                 669*******87765 PP

  == domain 14  score: 25.2 bits;  conditional E-value: 9.5e-09
   EF-hand_6   2 lreaFklfDkdgdGkidaeElrkalrkalg 31 
                 l ++F+++D dg+Gk+da E+ ka+r alg
  KOO22689.1 707 LVDLFRAWDEDGNGKVDAYEFYKAIR-ALG 735
                 789***********************.887 PP

  == domain 15  score: 10.8 bits;  conditional E-value: 0.00037
   EF-hand_6   5 aFklfDkdgdGkidaeElrka 25 
                 +Fk +D dg+G++ ++El   
  KOO22689.1 746 VFKSLDADGSGQLEYAELNEK 766
                 7****************9865 PP

  == domain 16  score: 17.8 bits;  conditional E-value: 2.2e-06
   EF-hand_6   2 lreaFklfDkdgdGkidaeElrkalr 27 
                 l ++F+++D dg+G +d++E+r+   
  KOO22689.1 841 LIDLFREWDEDGNGGLDKKEFRRGVA 866
                 789******************98765 PP

  == domain 17  score: 1.3 bits;  conditional E-value: 0.44
   EF-hand_6  14 dGkidaeElrkalrk 28 
                 +++i ++Elr al++
  KOO22689.1 904 NNFIEFSELRLALSD 918
                 89**********984 PP

  == domain 18  score: 23.3 bits;  conditional E-value: 3.8e-08
   EF-hand_6    3 reaFklfDkdgdGkidaeElrkalrkalg 31  
                   e+F+++Dkdg+G +d++Elr+a +  lg
  KOO22689.1  988 LELFREWDKDGNGMLDKHELRRAVK-TLG 1015
                  699********************99.565 PP

  == domain 19  score: 18.5 bits;  conditional E-value: 1.3e-06
   EF-hand_6    4 eaFklfDkdgdGkidaeElrkalr 27  
                  ++F+++D +gdG++d++E+++al+
  KOO22689.1 1025 AIFEAIDESGDGQVDFDEMKRALN 1048
                  79********************98 PP

>> EF-hand_7  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.4   1.0   2.6e-07   0.00026       3      67 ..       9     108 ..       7     112 .. 0.86
   2 !   25.1   0.3   1.8e-08   1.8e-05       1      70 [.      84     147 ..      84     148 .. 0.85
   3 !   23.3   0.5   6.4e-08   6.4e-05       4      68 ..     123     181 ..     120     184 .. 0.91
   4 !   13.4   0.1   8.2e-05     0.081       6      43 ..     161     193 ..     156     220 .. 0.70
   5 !   22.8   0.3   9.3e-08   9.3e-05       5      69 ..     259     317 ..     256     319 .. 0.88
   6 !   10.8   0.3   0.00051      0.51      14      64 ..     362     407 ..     360     414 .. 0.85
   7 !   24.9   0.6   2.1e-08   2.1e-05       1      71 []     386     450 ..     386     450 .. 0.84
   8 !   31.2   0.6   2.3e-10   2.3e-07       3      69 ..     424     484 ..     422     486 .. 0.92
   9 !   14.5   0.1   3.5e-05     0.035       5      61 ..     462     513 ..     458     516 .. 0.72
  10 !   27.2   0.2   3.8e-09   3.8e-06       4      69 ..     559     618 ..     557     620 .. 0.88
  11 !    8.3   0.0    0.0032       3.2      15      69 ..     645     694 ..     643     696 .. 0.93
  12 !   13.7   0.0   6.4e-05     0.064      43      71 .]     704     732 ..     697     733 .. 0.87
  13 !   16.0   0.0   1.3e-05     0.012       6      46 ..     745     780 ..     739     796 .. 0.82
  14 !   17.5   0.0   4.1e-06    0.0041       3      55 ..     840     886 ..     838     889 .. 0.94
  15 !   37.6   0.7   2.3e-12   2.3e-09       5      69 ..     988    1046 ..     985    1048 .. 0.93

  Alignments for each domain:
  == domain 1  score: 21.4 bits;  conditional E-value: 2.6e-07
   EF-hand_7   3 klkeaFkelDtdgdgyldkeellrllrkifqga....................................gegsklsdeelellfkefDtdkdGvisfdE 65 
                 ++  +F+++  dg+g+++ eel+ +l     ++                                    +eg++ ++eel++ f+e+D dk G i +  
  KOO22689.1   9 DIDAIFDSMNGDGNGFIEFEELKVALSDARIKIaaaekaeqkrkqdgtgdkegeskldvaqfsilvkarEEGKH-TEEELKARFDELDVDKTGWIEMAV 106
                 56778******************9666544444777788888899***********************788888.99******************9976 PP

   EF-hand_7  66 Fl 67 
                 +l
  KOO22689.1 107 YL 108
                 65 PP

  == domain 2  score: 25.1 bits;  conditional E-value: 1.8e-08
   EF-hand_7   1 eeklkeaFkelDtdgdgyldkeellr.llrkifqgagegsklsdeelellfkefDtdkdGvisfdEFlkly 70 
                 ee+lk +F+elD+d++g+++++ +l+  l+      + +  +++  l ++f ++D dk+G+i+  EF++++
  KOO22689.1  84 EEELKARFDELDVDKTGWIEMAVYLSwSLKD-----CIARASTR--LVDIFLKWDEDKSGSIDKVEFYRAV 147
                 689********************66545554.....66666666..88********************987 PP

  == domain 3  score: 23.3 bits;  conditional E-value: 6.4e-08
   EF-hand_7   4 lkeaFkelDtdgdgyldkeellrllrkifqgagegsklsdeelellfkefDtdkdGvisfdEFlk 68 
                 l ++F + D d++g++dk e+ r+++      + g+++s+   + +fk +D d++G + + E+ +
  KOO22689.1 123 LVDIFLKWDEDKSGSIDKVEFYRAVK------SLGFPVSQADTDIVFKTLDEDGSGNLEYKELSE 181
                 66789999************888999......*****************************9865 PP

  == domain 4  score: 13.4 bits;  conditional E-value: 8.2e-05
   EF-hand_7   6 eaFkelDtdgdgyldkeellrllrkifqgagegsklsd 43 
                  +Fk lD dg+g l++ el + lr+     g ++ +++
  KOO22689.1 161 IVFKTLDEDGSGNLEYKELSEKLRQ-----GLAKQITQ 193
                 57******************96665.....44443333 PP

  == domain 5  score: 22.8 bits;  conditional E-value: 9.3e-08
   EF-hand_7   5 keaFkelDtdgdgyldkeellrllrkifqgagegsklsdeelellfkefDtdkdGvisfdEFlkl 69 
                  + F+e D dg+g ld+ e ++ +         g + +++ ++++f+ ++ ++dG + f E++k+
  KOO22689.1 259 IDLFREWDDDGNGALDRKEWRKGFA------TLGYDAPQKDVDAIFDSMNENGDGFVEFGELKKA 317
                 578******************9998......5666656677*******************99987 PP

  == domain 6  score: 10.8 bits;  conditional E-value: 0.00051
   EF-hand_7  14 dgdgyldkeellrllrkifqgagegsklsdeelellfkefDtdkdGvisfd 64 
                 d+   +d e++  l+++     +e+ ++ +eel++ f+ +D dk+G+is+ 
  KOO22689.1 362 DDKSNVDFEDFCILIKA-----REEGNFKEEELKARFEWLDVDKSGQISMH 407
                 55566788999988888.....99************************985 PP

  == domain 7  score: 24.9 bits;  conditional E-value: 2.1e-08
   EF-hand_7   1 eeklkeaFkelDtdgdgyldkee.llrllrkifqgagegsklsdee..lellfkefDtdkdGvisfdEFlklyr 71 
                 ee+lk +F+ lD+d++g +++   l+    +     + ++ l++ +  l +lf+++D dk+G+++ +EF k++r
  KOO22689.1 386 EEELKARFEWLDVDKSGQISMHTyLM----W-----SLKDCLTRAStrLVDLFRKWDEDKSGTVDKNEFFKAVR 450
                 6899*******************555....3.....55555666443388*******************99875 PP

  == domain 8  score: 31.2 bits;  conditional E-value: 2.3e-10
   EF-hand_7   3 klkeaFkelDtdgdgyldkeellrllrkifqgagegsklsdeelellfkefDtdkdGvisfdEFlkl 69 
                 +l + F++ D d++g +dk+e+ +++r        g+++ +   +++fk +D d++G++ ++E+++ 
  KOO22689.1 424 RLVDLFRKWDEDKSGTVDKNEFFKAVR------ALGFPVEQVDTDEVFKSLDIDGSGSLEYSELVER 484
                 56789****************777***......99***99999********************9875 PP

  == domain 9  score: 14.5 bits;  conditional E-value: 3.5e-05
   EF-hand_7   5 keaFkelDtdgdgyldkeellrllrkifqgagegsklsdeelellfkefDtdkdGvi 61 
                  e+Fk+lD dg+g+l+++el + lr+     g ++ l+   l++   ++D ++ G++
  KOO22689.1 462 DEVFKSLDIDGSGSLEYSELVERLRA-----GIAKQLTLRNLKRAPGKVDRSRTGKL 513
                 579****************8876666.....66666665556555555555555555 PP

  == domain 10  score: 27.2 bits;  conditional E-value: 3.8e-09
   EF-hand_7   4 lkeaFkelDtdgdgyldkeellrllrkifqgagegsklsdeelellfkefDtdkdGvisfdEFlkl 69 
                 l + F+e D dg+g ld+ e ++ +         g + +++ ++++f+ ++ d++G + f+E++++
  KOO22689.1 559 LIDLFREWDDDGNGALDRKEWRKGIA------ALGYDAPKKDIDAIFDSMNEDGNGFVEFEELKTA 618
                 6789******************9999......5666666677********************9987 PP

  == domain 11  score: 8.3 bits;  conditional E-value: 0.0032
   EF-hand_7  15 gdgyldkeellrllrkifqgagegsklsdeelellfkefDtdkdGvisfdEFlkl 69 
                 g g+ld ee+  l+r      +e+ +++ eel++ f+ +  + +G +++  +l++
  KOO22689.1 645 GQGSLDFEEFCILVRG-----REEGEIPAEELKARFEALAPTANGMVTMAQYLTW 694
                 789************9.....9999*************************99987 PP

  == domain 12  score: 13.7 bits;  conditional E-value: 6.4e-05
   EF-hand_7  43 deelellfkefDtdkdGvisfdEFlklyr 71 
                 ++ l +lf+ +D d++G+++ +EF+k++r
  KOO22689.1 704 SQRLVDLFRAWDEDGNGKVDAYEFYKAIR 732
                 456889*******************9975 PP

  == domain 13  score: 16.0 bits;  conditional E-value: 1.3e-05
   EF-hand_7   6 eaFkelDtdgdgyldkeellrllrkifqgagegsklsdeel 46 
                  +Fk+lD dg+g l+++el + lr+     g g++l+   l
  KOO22689.1 745 LVFKSLDADGSGQLEYAELNEKLRA-----GVGKELTLRNL 780
                 57*******************9999.....99999876555 PP

  == domain 14  score: 17.5 bits;  conditional E-value: 4.1e-06
   EF-hand_7   3 klkeaFkelDtdgdgyldkeellrllrkifqgagegsklsdeelellfkefDt 55 
                 kl + F+e D dg+g ldk e++r +         g kl+  e++++f+ +D+
  KOO22689.1 840 KLIDLFREWDEDGNGGLDKKEFRRGVA------ALGYKLPAAEIDAVFDTIDS 886
                 68899*******************999......9*****************97 PP

  == domain 15  score: 37.6 bits;  conditional E-value: 2.3e-12
   EF-hand_7    5 keaFkelDtdgdgyldkeellrllrkifqgagegsklsdeelellfkefDtdkdGvisfdEFlkl 69  
                   e F+e D+dg+g+ldk el+r+++        g++ +    +++f+ +D ++dG+++fdE++++
  KOO22689.1  988 LELFREWDKDGNGMLDKHELRRAVK------TLGFVADVADCDAIFEAIDESGDGQVDFDEMKRA 1046
                  578**********************......8999999999*********************876 PP

>> EF-hand_1  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   0.9   2.7e-06    0.0027       1      27 [.       9      35 ..       9      37 .. 0.93
   2 ?    3.1   0.1      0.08        80       1      15 [.      86     100 ..      86     100 .. 0.93
   3 !   15.2   0.1   1.1e-05     0.011       3      29 .]     124     150 ..     122     150 .. 0.92
   4 !   10.5   0.3   0.00036      0.36       4      23 ..     161     180 ..     158     181 .. 0.89
   5 !   16.6   0.2     4e-06     0.004       3      28 ..     259     284 ..     257     285 .. 0.90
   6 !   14.8   0.8   1.5e-05     0.015       1      27 [.     293     319 ..     293     321 .. 0.92
   7 ?   -1.5   0.0       2.5   2.5e+03      17      27 ..     367     377 ..     362     378 .. 0.85
   8 ?    3.3   0.0     0.073        73       9      18 ..     396     405 ..     388     409 .. 0.79
   9 !   19.4   0.1   5.3e-07   0.00052       3      28 ..     426     451 ..     424     452 .. 0.91
  10 !   16.9   0.0   3.3e-06    0.0033       2      27 ..     461     486 ..     460     488 .. 0.91
  11 !   16.0   0.1     6e-06     0.006       3      28 ..     560     585 ..     558     586 .. 0.89
  12 !   17.4   0.7   2.2e-06    0.0022       1      27 [.     594     620 ..     594     622 .. 0.93
  13 ?    3.6   0.0     0.056        55      13      27 ..     645     659 ..     643     660 .. 0.85
  14 !   16.5   0.0   4.3e-06    0.0043       3      28 ..     708     733 ..     706     734 .. 0.90
  15 !   10.7   0.0   0.00031       0.3       5      22 ..     746     763 ..     742     765 .. 0.91
  16 !   18.3   0.1   1.2e-06    0.0012       2      28 ..     841     867 ..     840     868 .. 0.90
  17 ?    0.6   0.0      0.52   5.2e+02      14      27 ..     904     917 ..     903     919 .. 0.86
  18 !   23.1   0.0   3.3e-08   3.3e-05       2      29 .]     987    1014 ..     986    1014 .. 0.92
  19 !   21.5   1.0   1.1e-07   0.00011       1      28 [.    1022    1049 ..    1022    1050 .. 0.93

  Alignments for each domain:
  == domain 1  score: 17.1 bits;  conditional E-value: 2.7e-06
                HHHHHHHHHTTTSSSEEEHHHHHHHHH CS
   EF-hand_1  1 elkeiFrefDkDgdGkIdfeEfkellk 27
                +++ iF+ +  Dg+G+I+feE+k +l+
  KOO22689.1  9 DIDAIFDSMNGDGNGFIEFEELKVALS 35
                6899*******************9986 PP

  == domain 2  score: 3.1 bits;  conditional E-value: 0.08
                 HHHHHHHHHTTTSSS CS
   EF-hand_1   1 elkeiFrefDkDgdG 15 
                 elk  F+e+D+D++G
  KOO22689.1  86 ELKARFDELDVDKTG 100
                 78999********98 PP

  == domain 3  score: 15.2 bits;  conditional E-value: 1.1e-05
                 HHHHHHHTTTSSSEEEHHHHHHHHHHH CS
   EF-hand_1   3 keiFrefDkDgdGkIdfeEfkellkkl 29 
                  +iF + D D++G Id+ Ef +++k+l
  KOO22689.1 124 VDIFLKWDEDKSGSIDKVEFYRAVKSL 150
                 689********************9985 PP

  == domain 4  score: 10.5 bits;  conditional E-value: 0.00036
                 HHHHHHTTTSSSEEEHHHHH CS
   EF-hand_1   4 eiFrefDkDgdGkIdfeEfk 23 
                  +F+ +D Dg+G ++++E+ 
  KOO22689.1 161 IVFKTLDEDGSGNLEYKELS 180
                 58****************95 PP

  == domain 5  score: 16.6 bits;  conditional E-value: 4e-06
                 HHHHHHHTTTSSSEEEHHHHHHHHHH CS
   EF-hand_1   3 keiFrefDkDgdGkIdfeEfkellkk 28 
                  ++Fre D Dg+G +d++E+++ +++
  KOO22689.1 259 IDLFREWDDDGNGALDRKEWRKGFAT 284
                 689******************99876 PP

  == domain 6  score: 14.8 bits;  conditional E-value: 1.5e-05
                 HHHHHHHHHTTTSSSEEEHHHHHHHHH CS
   EF-hand_1   1 elkeiFrefDkDgdGkIdfeEfkellk 27 
                 +++ iF+ +  +gdG+++f E+k++l+
  KOO22689.1 293 DVDAIFDSMNENGDGFVEFGELKKALS 319
                 5899********************997 PP

  == domain 7  score: -1.5 bits;  conditional E-value: 2.5
                 EEHHHHHHHHH CS
   EF-hand_1  17 IdfeEfkellk 27 
                 +dfe+f+ l+k
  KOO22689.1 367 VDFEDFCILIK 377
                 8******9887 PP

  == domain 8  score: 3.3 bits;  conditional E-value: 0.073
                 HTTTSSSEEE CS
   EF-hand_1   9 fDkDgdGkId 18 
                 +D+D++G+I+
  KOO22689.1 396 LDVDKSGQIS 405
                 8********8 PP

  == domain 9  score: 19.4 bits;  conditional E-value: 5.3e-07
                 HHHHHHHTTTSSSEEEHHHHHHHHHH CS
   EF-hand_1   3 keiFrefDkDgdGkIdfeEfkellkk 28 
                  ++Fr+ D D++G++d++Ef +++++
  KOO22689.1 426 VDLFRKWDEDKSGTVDKNEFFKAVRA 451
                 589*******************9987 PP

  == domain 10  score: 16.9 bits;  conditional E-value: 3.3e-06
                 HHHHHHHHTTTSSSEEEHHHHHHHHH CS
   EF-hand_1   2 lkeiFrefDkDgdGkIdfeEfkellk 27 
                  +e+F+ +D Dg+G ++++E++e l+
  KOO22689.1 461 TDEVFKSLDIDGSGSLEYSELVERLR 486
                 589*******************9877 PP

  == domain 11  score: 16.0 bits;  conditional E-value: 6e-06
                 HHHHHHHTTTSSSEEEHHHHHHHHHH CS
   EF-hand_1   3 keiFrefDkDgdGkIdfeEfkellkk 28 
                  ++Fre D Dg+G +d++E+++ +++
  KOO22689.1 560 IDLFREWDDDGNGALDRKEWRKGIAA 585
                 689******************98875 PP

  == domain 12  score: 17.4 bits;  conditional E-value: 2.2e-06
                 HHHHHHHHHTTTSSSEEEHHHHHHHHH CS
   EF-hand_1   1 elkeiFrefDkDgdGkIdfeEfkellk 27 
                 +++ iF+ +  Dg+G+++feE+k++l+
  KOO22689.1 594 DIDAIFDSMNEDGNGFVEFEELKTALS 620
                 689*********************986 PP

  == domain 13  score: 3.6 bits;  conditional E-value: 0.056
                 SSSEEEHHHHHHHHH CS
   EF-hand_1  13 gdGkIdfeEfkellk 27 
                 g G +dfeEf+ l++
  KOO22689.1 645 GQGSLDFEEFCILVR 659
                 6699******98875 PP

  == domain 14  score: 16.5 bits;  conditional E-value: 4.3e-06
                 HHHHHHHTTTSSSEEEHHHHHHHHHH CS
   EF-hand_1   3 keiFrefDkDgdGkIdfeEfkellkk 28 
                  ++Fr  D Dg+Gk+d  Ef +++++
  KOO22689.1 708 VDLFRAWDEDGNGKVDAYEFYKAIRA 733
                 579*****************999987 PP

  == domain 15  score: 10.7 bits;  conditional E-value: 0.00031
                 HHHHHTTTSSSEEEHHHH CS
   EF-hand_1   5 iFrefDkDgdGkIdfeEf 22 
                 +F+ +D Dg+G++++ E+
  KOO22689.1 746 VFKSLDADGSGQLEYAEL 763
                 79***************8 PP

  == domain 16  score: 18.3 bits;  conditional E-value: 1.2e-06
                 HHHHHHHHTTTSSSEEEHHHHHHHHHH CS
   EF-hand_1   2 lkeiFrefDkDgdGkIdfeEfkellkk 28 
                 l ++Fre D Dg+G +d++Ef++ +++
  KOO22689.1 841 LIDLFREWDEDGNGGLDKKEFRRGVAA 867
                 6789******************99876 PP

  == domain 17  score: 0.6 bits;  conditional E-value: 0.52
                 SSEEEHHHHHHHHH CS
   EF-hand_1  14 dGkIdfeEfkellk 27 
                 + +I+f+E++ +l+
  KOO22689.1 904 NNFIEFSELRLALS 917
                 679*******9986 PP

  == domain 18  score: 23.1 bits;  conditional E-value: 3.3e-08
                  HHHHHHHHTTTSSSEEEHHHHHHHHHHH CS
   EF-hand_1    2 lkeiFrefDkDgdGkIdfeEfkellkkl 29  
                  + e+Fre DkDg+G +d+ E+++++k+l
  KOO22689.1  987 VLELFREWDKDGNGMLDKHELRRAVKTL 1014
                  5699********************9975 PP

  == domain 19  score: 21.5 bits;  conditional E-value: 1.1e-07
                  HHHHHHHHHTTTSSSEEEHHHHHHHHHH CS
   EF-hand_1    1 elkeiFrefDkDgdGkIdfeEfkellkk 28  
                  +++ iF+ +D  gdG++df+E+k++l++
  KOO22689.1 1022 DCDAIFEAIDESGDGQVDFDEMKRALNS 1049
                  5899*********************986 PP

>> EF-hand_8  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.9   0.4    0.0013       1.3      24      52 ..       6      34 ..       1      36 [. 0.89
   2 ?   -3.0   0.0       6.9   6.9e+03      22      41 ..      81     100 ..      71     102 .. 0.77
   3 !   22.5   0.0   7.3e-08   7.3e-05       2      48 ..     135     179 ..     134     183 .. 0.95
   4 ?    5.7   0.2     0.013        13      30      47 ..     260     277 ..     259     284 .. 0.91
   5 ?    5.5   0.4     0.015        15      24      49 ..     290     315 ..     279     320 .. 0.82
   6 ?   -1.8   0.0       2.9   2.9e+03       7      27 ..     339     360 ..     338     367 .. 0.80
   7 ?   -1.2   0.1       1.9   1.8e+03      22      44 ..     383     405 ..     364     406 .. 0.55
   8 !   13.3   0.2   5.6e-05     0.056      30      52 ..     427     449 ..     422     452 .. 0.90
   9 !    7.7   0.0    0.0033       3.3      27      52 ..     460     485 ..     447     487 .. 0.79
  10 ?    5.5   0.2     0.015        15      30      47 ..     561     578 ..     558     580 .. 0.93
  11 !   11.6   0.5   0.00019      0.19      15      49 ..     584     616 ..     575     619 .. 0.85
  12 ?    3.3   0.0     0.076        75      39      52 ..     645     658 ..     643     659 .. 0.85
  13 !   10.4   0.0   0.00045      0.44      26      50 ..     705     729 ..     695     731 .. 0.85
  14 !   17.8   0.0   2.1e-06    0.0021       2      47 ..     719     762 ..     718     763 .. 0.95
  15 !   10.5   0.2   0.00042      0.42      30      49 ..     843     862 ..     840     866 .. 0.91
  16 !   12.8   0.0   7.8e-05     0.078       2      36 ..     853     885 ..     852     886 .. 0.94
  17 ?    6.0   0.1     0.011        11      24      47 ..     983    1006 ..     972    1006 .. 0.82
  18 !   24.8   0.7   1.5e-08   1.5e-05       2      49 ..     999    1044 ..     998    1049 .. 0.91

  Alignments for each domain:
  == domain 1  score: 8.9 bits;  conditional E-value: 0.0013
   EF-hand_8 24 seeevdilfrefDtdgdGkisfeEFcvll 52
                 ++++d++f+ +  dg+G i feE  v l
  KOO22689.1  6 PNKDIDAIFDSMNGDGNGFIEFEELKVAL 34
                5789********************99876 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 6.9
   EF-hand_8  22 glseeevdilfrefDtdgdG 41 
                 + +eee+ + f+e+D d+ G
  KOO22689.1  81 KHTEEELKARFDELDVDKTG 100
                 45899999999999999877 PP

  == domain 3  score: 22.5 bits;  conditional E-value: 7.3e-08
   EF-hand_8   2 kgkItreelrrilrilglkkglseeevdilfrefDtdgdGkisfeEF 48 
                 +g+I++ e++r++++lg +  +s  + di+f+++D+dg+G + ++E 
  KOO22689.1 135 SGSIDKVEFYRAVKSLGFP--VSQADTDIVFKTLDEDGSGNLEYKEL 179
                 79***********999***..*********************99996 PP

  == domain 4  score: 5.7 bits;  conditional E-value: 0.013
   EF-hand_8  30 ilfrefDtdgdGkisfeE 47 
                 +lfre D dg+G+++ +E
  KOO22689.1 260 DLFREWDDDGNGALDRKE 277
                 59*************998 PP

  == domain 5  score: 5.5 bits;  conditional E-value: 0.015
   EF-hand_8  24 seeevdilfrefDtdgdGkisfeEFc 49 
                   ++vd++f+ + ++gdG + f E  
  KOO22689.1 290 PQKDVDAIFDSMNENGDGFVEFGELK 315
                 5678**************99998866 PP

  == domain 6  score: -1.8 bits;  conditional E-value: 2.9
   EF-hand_8   7 reelrril.rilglkkglseee 27 
                 r +l+ ++ + +g  k+ls++ 
  KOO22689.1 339 RKSLKQASkKDVGEGKQLSADV 360
                 789*********7666688775 PP

  == domain 7  score: -1.2 bits;  conditional E-value: 1.9
   EF-hand_8  22 glseeevdilfrefDtdgdGkis 44 
                  + eee+ + f  +D d++G is
  KOO22689.1 383 NFKEEELKARFEWLDVDKSGQIS 405
                 46666666666777777777776 PP

  == domain 8  score: 13.3 bits;  conditional E-value: 5.6e-05
   EF-hand_8  30 ilfrefDtdgdGkisfeEFcvll 52 
                 +lfr+ D+d++G+++++EF+  +
  KOO22689.1 427 DLFRKWDEDKSGTVDKNEFFKAV 449
                 79*****************9876 PP

  == domain 9  score: 7.7 bits;  conditional E-value: 0.0033
   EF-hand_8  27 evdilfrefDtdgdGkisfeEFcvll 52 
                 + d++f+ +D+dg+G + + E +++l
  KOO22689.1 460 DTDEVFKSLDIDGSGSLEYSELVERL 485
                 5789*****************99876 PP

  == domain 10  score: 5.5 bits;  conditional E-value: 0.015
   EF-hand_8  30 ilfrefDtdgdGkisfeE 47 
                 +lfre D dg+G+++ +E
  KOO22689.1 561 DLFREWDDDGNGALDRKE 578
                 59*************988 PP

  == domain 11  score: 11.6 bits;  conditional E-value: 0.00019
   EF-hand_8  15 rilglkkglseeevdilfrefDtdgdGkisfeEFc 49 
                 ++lg+     ++++d++f+ + +dg+G + feE  
  KOO22689.1 584 AALGYD--APKKDIDAIFDSMNEDGNGFVEFEELK 616
                 556777..899**********************86 PP

  == domain 12  score: 3.3 bits;  conditional E-value: 0.076
   EF-hand_8  39 gdGkisfeEFcvll 52 
                 g G ++feEFc l+
  KOO22689.1 645 GQGSLDFEEFCILV 658
                 78*********775 PP

  == domain 13  score: 10.4 bits;  conditional E-value: 0.00045
   EF-hand_8  26 eevdilfrefDtdgdGkisfeEFcv 50 
                 + + +lfr+ D+dg+Gk++  EF+ 
  KOO22689.1 705 QRLVDLFRAWDEDGNGKVDAYEFYK 729
                 56779***************99985 PP

  == domain 14  score: 17.8 bits;  conditional E-value: 2.1e-06
   EF-hand_8   2 kgkItreelrrilrilglkkglseeevdilfrefDtdgdGkisfeE 47 
                 +gk++  e+++++r+lg +  + e++   +f+ +D dg+G + + E
  KOO22689.1 719 NGKVDAYEFYKAIRALGFP--VEESDTNLVFKSLDADGSGQLEYAE 762
                 799****************..*********************9988 PP

  == domain 15  score: 10.5 bits;  conditional E-value: 0.00042
   EF-hand_8  30 ilfrefDtdgdGkisfeEFc 49 
                 +lfre D+dg+G ++++EF 
  KOO22689.1 843 DLFREWDEDGNGGLDKKEFR 862
                 69*****************6 PP

  == domain 16  score: 12.8 bits;  conditional E-value: 7.8e-05
   EF-hand_8   2 kgkItreelrrilrilglkkglseeevdilfrefD 36 
                 +g +++ e+rr +++lg+k  l + e+d++f+++D
  KOO22689.1 853 NGGLDKKEFRRGVAALGYK--LPAAEIDAVFDTID 885
                 6999*******99999***..*************9 PP

  == domain 17  score: 6.0 bits;  conditional E-value: 0.011
   EF-hand_8   24 seeevdilfrefDtdgdGkisfeE 47  
                  ++ +v +lfre D dg+G++++ E
  KOO22689.1  983 NNIKVLELFREWDKDGNGMLDKHE 1006
                  5566778*************9765 PP

  == domain 18  score: 24.8 bits;  conditional E-value: 1.5e-08
   EF-hand_8    2 kgkItreelrrilrilglkkglseeevdilfrefDtdgdGkisfeEFc 49  
                  +g ++++elrr++++lg        ++d++f ++D+ gdG ++f+E  
  KOO22689.1  999 NGMLDKHELRRAVKTLGFV--ADVADCDAIFEAIDESGDGQVDFDEMK 1044
                  57789************99..9***********************965 PP

>> EF-hand_5  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.4   0.3    0.0033       3.2       3      22 ..      12      31 ..      10      35 .. 0.80
   2 ?   -1.7   0.1       2.4   2.4e+03       1      12 [.      87      98 ..      87     100 .. 0.87
   3 !    8.6   0.1    0.0013       1.3       1      23 [.     123     145 ..     123     148 .. 0.88
   4 !    7.1   0.1    0.0039       3.9       4      23 ..     162     181 ..     159     183 .. 0.88
   5 !   12.1   0.5   0.00011      0.11       1      23 [.     258     280 ..     258     283 .. 0.91
   6 !    6.4   0.2    0.0067       6.6       5      23 ..     298     316 ..     294     319 .. 0.78
   7 !    6.6   0.0     0.006       5.9       2      18 ..     390     406 ..     389     407 .. 0.85
   8 !   12.7   0.2   6.7e-05     0.067       1      21 [.     425     445 ..     425     450 .. 0.93
   9 !    9.9   0.0   0.00051      0.51       3      21 ..     463     481 ..     461     485 .. 0.88
  10 !   11.5   0.5   0.00016      0.16       1      23 [.     559     581 ..     559     583 .. 0.92
  11 !    7.0   0.3    0.0044       4.3       3      23 ..     597     617 ..     595     620 .. 0.79
  12 ?   -3.0   0.1       6.3   6.3e+03      14      21 ..     647     654 ..     647     654 .. 0.92
  13 !   12.5   0.0   7.6e-05     0.076       1      23 [.     707     729 ..     707     731 .. 0.93
  14 !   10.7   0.0    0.0003       0.3       4      23 ..     746     765 ..     744     767 .. 0.89
  15 !   10.8   0.5   0.00027      0.27       1      23 [.     841     863 ..     841     866 .. 0.91
  16 !   13.1   0.0   4.9e-05     0.049       4      23 ..     990    1009 ..     987    1012 .. 0.88
  17 !   14.8   0.8   1.5e-05     0.015       3      23 ..    1025    1045 ..    1024    1048 .. 0.90

  Alignments for each domain:
  == domain 1  score: 7.4 bits;  conditional E-value: 0.0033
                HHHHHH-SS-SSCE-HHHHH CS
   EF-hand_5  3 dtFqaiDlNgDGkIskeELk 22
                + F+ +  +g G+I +eELk
  KOO22689.1 12 AIFDSMNGDGNGFIEFEELK 31
                56677777***********8 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 2.4
                HHHHHHHH-SS- CS
   EF-hand_5  1 lkdtFqaiDlNg 12
                lk+ F+++D+++
  KOO22689.1 87 LKARFDELDVDK 98
                6788******97 PP

  == domain 3  score: 8.6 bits;  conditional E-value: 0.0013
                 HHHHHHHH-SS-SSCE-HHHHHH CS
   EF-hand_5   1 lkdtFqaiDlNgDGkIskeELkt 23 
                 l+d F + D +++G I+k E+++
  KOO22689.1 123 LVDIFLKWDEDKSGSIDKVEFYR 145
                 67889999*************98 PP

  == domain 4  score: 7.1 bits;  conditional E-value: 0.0039
                 HHHHH-SS-SSCE-HHHHHH CS
   EF-hand_5   4 tFqaiDlNgDGkIskeELkt 23 
                 +F+ +D +g+G +   EL +
  KOO22689.1 162 VFKTLDEDGSGNLEYKELSE 181
                 8****************965 PP

  == domain 5  score: 12.1 bits;  conditional E-value: 0.00011
                 HHHHHHHH-SS-SSCE-HHHHHH CS
   EF-hand_5   1 lkdtFqaiDlNgDGkIskeELkt 23 
                 l d+F++ D +g G +++ E+++
  KOO22689.1 258 LIDLFREWDDDGNGALDRKEWRK 280
                 6799*****************98 PP

  == domain 6  score: 6.4 bits;  conditional E-value: 0.0067
                 HHHH-SS-SSCE-HHHHHH CS
   EF-hand_5   5 FqaiDlNgDGkIskeELkt 23 
                 F+ +  NgDG++ + ELk+
  KOO22689.1 298 FDSMNENGDGFVEFGELKK 316
                 555667***********97 PP

  == domain 7  score: 6.6 bits;  conditional E-value: 0.006
                 HHHHHHH-SS-SSCE-H CS
   EF-hand_5   2 kdtFqaiDlNgDGkIsk 18 
                 k+ F+ +D++++G+Is+
  KOO22689.1 390 KARFEWLDVDKSGQISM 406
                 6678889*********8 PP

  == domain 8  score: 12.7 bits;  conditional E-value: 6.7e-05
                 HHHHHHHH-SS-SSCE-HHHH CS
   EF-hand_5   1 lkdtFqaiDlNgDGkIskeEL 21 
                 l+d+F++ D +++G+++k E+
  KOO22689.1 425 LVDLFRKWDEDKSGTVDKNEF 445
                 789*****************9 PP

  == domain 9  score: 9.9 bits;  conditional E-value: 0.00051
                 HHHHHH-SS-SSCE-HHHH CS
   EF-hand_5   3 dtFqaiDlNgDGkIskeEL 21 
                 ++F+ +D +g+G +  +EL
  KOO22689.1 463 EVFKSLDIDGSGSLEYSEL 481
                 69****************9 PP

  == domain 10  score: 11.5 bits;  conditional E-value: 0.00016
                 HHHHHHHH-SS-SSCE-HHHHHH CS
   EF-hand_5   1 lkdtFqaiDlNgDGkIskeELkt 23 
                 l d+F++ D +g G +++ E+++
  KOO22689.1 559 LIDLFREWDDDGNGALDRKEWRK 581
                 6799*****************97 PP

  == domain 11  score: 7.0 bits;  conditional E-value: 0.0044
                 HHHHHH-SS-SSCE-HHHHHH CS
   EF-hand_5   3 dtFqaiDlNgDGkIskeELkt 23 
                 + F+ +  +g G++ +eELkt
  KOO22689.1 597 AIFDSMNEDGNGFVEFEELKT 617
                 56666667***********98 PP

  == domain 12  score: -3.0 bits;  conditional E-value: 6.3
                 SCE-HHHH CS
   EF-hand_5  14 GkIskeEL 21 
                 G +++eE+
  KOO22689.1 647 GSLDFEEF 654
                 899****9 PP

  == domain 13  score: 12.5 bits;  conditional E-value: 7.6e-05
                 HHHHHHHH-SS-SSCE-HHHHHH CS
   EF-hand_5   1 lkdtFqaiDlNgDGkIskeELkt 23 
                 l+d+F+a D +g Gk+++ E+++
  KOO22689.1 707 LVDLFRAWDEDGNGKVDAYEFYK 729
                 789******************86 PP

  == domain 14  score: 10.7 bits;  conditional E-value: 0.0003
                 HHHHH-SS-SSCE-HHHHHH CS
   EF-hand_5   4 tFqaiDlNgDGkIskeELkt 23 
                 +F+ +D++g+G++   EL +
  KOO22689.1 746 VFKSLDADGSGQLEYAELNE 765
                 7****************975 PP

  == domain 15  score: 10.8 bits;  conditional E-value: 0.00027
                 HHHHHHHH-SS-SSCE-HHHHHH CS
   EF-hand_5   1 lkdtFqaiDlNgDGkIskeELkt 23 
                 l d+F++ D +g G ++k E+++
  KOO22689.1 841 LIDLFREWDEDGNGGLDKKEFRR 863
                 6799*****************98 PP

  == domain 16  score: 13.1 bits;  conditional E-value: 4.9e-05
                  HHHHH-SS-SSCE-HHHHHH CS
   EF-hand_5    4 tFqaiDlNgDGkIskeELkt 23  
                  +F++ D++g G ++k EL++
  KOO22689.1  990 LFREWDKDGNGMLDKHELRR 1009
                  69999*************98 PP

  == domain 17  score: 14.8 bits;  conditional E-value: 1.5e-05
                  HHHHHH-SS-SSCE-HHHHHH CS
   EF-hand_5    3 dtFqaiDlNgDGkIskeELkt 23  
                  + F+aiD  gDG+++++E k+
  KOO22689.1 1025 AIFEAIDESGDGQVDFDEMKR 1045
                  58****************998 PP

>> Abhydrolase_2  Phospholipase/Carboxylesterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.3   0.0   1.2e-12   1.2e-09       5     200 ..    1108    1312 ..    1105    1319 .. 0.85

  Alignments for each domain:
  == domain 1  score: 38.3 bits;  conditional E-value: 1.2e-12
                     EEE--SS---EEEEEE--TT--SHHHHHH..HH.TT--TTEEEEEE---EE........E-GGGTT-EEE-SS-B--SSTTS.-B-HHHHHHHH CS
  Abhydrolase_2    5 evvspkdkaqavviflHGlGdsghawaea..akteaalpnikfifphgpel........pvtlnggmrmpaWfdlvglspek.kedeagikksa 87  
                      + +p+ +++++v++lH   +++++++     +  + +++ikf+fp+ p +        p+    g    + f ++  ++e+    e++ + ++
     KOO22689.1 1108 LIFEPHGEHTHTVVMLHPEVSTAEGVYGRlgKRFLSMSEHIKFVFPRVPLRdgspfwflPPRTREGNLPAMHFYIQPDDEEAdAFAEEQLQLQT 1201
                     6889999**********9999997776441134556789*******98743233333337788888887899****9999999889999***** PP

                     HHHHHHHHHHHHTT.--GGGEEEEEETHHHHHHHHHHHT-SS--SEEEEES---TTGGGTTTTS-GGGGG-EEEEEEETT-SSS-HHHHHHHHH CS
  Abhydrolase_2   88 ekleelidaelkkg.ipssriiigGFSqGaalalylaltlpkklggivafsgalplsqklessatavtkklpilqiHgeeDpvvplalgkaake 180 
                     e l+++++ e +    + +r ++gG  qG+ +al++a++ + +lg  + +  a +l+ ++++  ++++ ++pi+   g  D v pl ++++a  
     KOO22689.1 1202 ERLHAILEREAAILrGDTQRLVVGGTAQGGSVALHAAMKFRAPLGALLCLRTAPLLKFTVAN--SRLN-QTPIFIFAGGRDSVCPLTHMQEAFA 1292
                     ***********999457899******************************999999888887..8888.89*********************** PP

                     HHHTTS-GEEEEEETT--SS CS
  Abhydrolase_2  181 vlkkllkkvelksyeglaHs 200 
                      l+k   k e ++ +gl+H 
     KOO22689.1 1293 GLSKGGYKLEWHVEPGLGHT 1312
                     ***99999999999999997 PP

>> p25-alpha  p25-alpha
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.5   0.1     0.035        35      42      85 ..       8      50 ..       3      71 .. 0.82
   2 !    8.0   0.2     0.003         3      38      85 ..     153     200 ..     129     225 .. 0.77
   3 !   11.7   0.5   0.00022      0.22      40     101 ..     290     351 ..     268     369 .. 0.72
   4 ?   -2.0   0.0       3.5   3.5e+03      25      74 ..     445     491 ..     428     499 .. 0.70
   5 ?    4.5   0.0     0.035        35      41      82 ..     592     635 ..     570     653 .. 0.74
   6 ?   -0.9   0.0       1.7   1.7e+03      38      74 ..     737     773 ..     718     799 .. 0.84
   7 !    6.4   0.0    0.0093       9.2      41      78 ..    1020    1057 ..    1003    1084 .. 0.87

  Alignments for each domain:
  == domain 1  score: 4.5 bits;  conditional E-value: 0.035
   p25-alpha 42 tdvDiiFsKvkaksarkitfeqfkealeelaekkfkkkkkeeel 85
                +d+D iF  +++ ++  i+fe+ k al++   k ++ ++k e++
  KOO22689.1  8 KDIDAIFDSMNGDGNGFIEFEELKVALSDARIK-IAAAEKAEQK 50
                79*************************998877.5555555555 PP

  == domain 2  score: 8.0 bits;  conditional E-value: 0.003
   p25-alpha  38 kvtstdvDiiFsKvkaksarkitfeqfkealeelaekkfkkkkkeeel 85 
                  v + d+Di+F+   + ++ ++++++  e l++  +k++ + k +  +
  KOO22689.1 153 PVSQADTDIVFKTLDEDGSGNLEYKELSEKLRQGLAKQITQRKLKRGE 200
                 68899**************************99999988665544433 PP

  == domain 3  score: 11.7 bits;  conditional E-value: 0.00022
   p25-alpha  40 tstdvDiiFsKvkaksarkitfeqfkealeelaekkfkkkkkeeel.eliekliegkgPklqg 101
                  ++dvD iF  ++++++  ++f + k+al+++  ++ +k+ +  ++ ++ + l +++ +k  g
  KOO22689.1 290 PQKDVDAIFDSMNENGDGFVEFGELKKALSDVSVNRAAKQDQAAAElKKRKSLKQAS-KKDVG 351
                 579*****************************9998877766666524444444444.44444 PP

  == domain 4  score: -2.0 bits;  conditional E-value: 3.5
   p25-alpha  25 fsKlckDckiidkkvtstdvDiiFsKvkaksarkitfeqfkealeelaek 74 
                 f K ++     +  v++ d+D +F+     ++ ++++++  e l+   +k
  KOO22689.1 445 FFKAVRAL---GFPVEQVDTDEVFKSLDIDGSGSLEYSELVERLRAGIAK 491
                 44444433...347888899999999998888888888888887765555 PP

  == domain 5  score: 4.5 bits;  conditional E-value: 0.035
   p25-alpha  41 stdvDiiFsKvkaksarkitfeqfkealee..laekkfkkkkke 82 
                 ++d+D iF  +++ ++  ++fe+ k+al+   + +k+ + k+ke
  KOO22689.1 592 KKDIDAIFDSMNEDGNGFVEFEELKTALSGkrIRAKAAEAKVKE 635
                 689************************97411444433333333 PP

  == domain 6  score: -0.9 bits;  conditional E-value: 1.7
   p25-alpha  38 kvtstdvDiiFsKvkaksarkitfeqfkealeelaek 74 
                  v++ d+ ++F+   a ++ ++++++ +e l+  + k
  KOO22689.1 737 PVEESDTNLVFKSLDADGSGQLEYAELNEKLRAGVGK 773
                 57899*********************99999876666 PP

  == domain 7  score: 6.4 bits;  conditional E-value: 0.0093
   p25-alpha   41 stdvDiiFsKvkaksarkitfeqfkealeelaekkfkk 78  
                    d D iF+ + ++++ +++f+++k+al+ + + ++++
  KOO22689.1 1020 VADCDAIFEAIDESGDGQVDFDEMKRALNSFLKGRMPT 1057
                  6799*************************999887765 PP

>> EF-hand_10  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.0       3.7   3.7e+03      26      45 ..     126     145 ..     125     150 .. 0.81
   2 ?    2.1   0.1      0.17   1.7e+02      25      45 ..     161     181 ..     145     185 .. 0.85
   3 ?    0.6   0.0      0.52   5.2e+02      25      43 ..     260     278 ..     259     285 .. 0.88
   4 ?    3.8   0.0     0.054        54      25      44 ..     427     446 ..     426     452 .. 0.87
   5 ?    1.5   0.0      0.28   2.8e+02      24      45 ..     462     483 ..     454     487 .. 0.86
   6 ?    0.2   0.0       0.7     7e+02      25      43 ..     561     579 ..     560     582 .. 0.90
   7 ?    1.2   0.0      0.34   3.4e+02      19      45 ..     739     765 ..     721     769 .. 0.82
   8 ?    1.9   0.0      0.21   2.1e+02      25      44 ..     843     862 ..     842     866 .. 0.92
   9 !    6.7   0.0    0.0065       6.5      12      45 ..     981    1009 ..     973    1014 .. 0.76
  10 ?   -0.4   0.1       1.1   1.1e+03      25      44 ..    1025    1044 ..    1022    1049 .. 0.85

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 3.7
  EF-hand_10  26 LFkkcDkSksgrLegeEiee 45 
                 +F k D+ ksg+++  E+  
  KOO22689.1 126 IFLKWDEDKSGSIDKVEFYR 145
                 799999*******9999755 PP

  == domain 2  score: 2.1 bits;  conditional E-value: 0.17
  EF-hand_10  25 kLFkkcDkSksgrLegeEiee 45 
                  +Fk+ D+  sg Le +E+ e
  KOO22689.1 161 IVFKTLDEDGSGNLEYKELSE 181
                 68***************9876 PP

  == domain 3  score: 0.6 bits;  conditional E-value: 0.52
  EF-hand_10  25 kLFkkcDkSksgrLegeEi 43 
                  LF++ D   +g L+ +E 
  KOO22689.1 260 DLFREWDDDGNGALDRKEW 278
                 59*************9996 PP

  == domain 4  score: 3.8 bits;  conditional E-value: 0.054
  EF-hand_10  25 kLFkkcDkSksgrLegeEie 44 
                  LF+k D+ ksg+ + +E+ 
  KOO22689.1 427 DLFRKWDEDKSGTVDKNEFF 446
                 59****************85 PP

  == domain 5  score: 1.5 bits;  conditional E-value: 0.28
  EF-hand_10  24 ekLFkkcDkSksgrLegeEiee 45 
                  ++Fk  D   sg+Le +E++e
  KOO22689.1 462 DEVFKSLDIDGSGSLEYSELVE 483
                 579****************986 PP

  == domain 6  score: 0.2 bits;  conditional E-value: 0.7
  EF-hand_10  25 kLFkkcDkSksgrLegeEi 43 
                  LF++ D   +g L+ +E 
  KOO22689.1 561 DLFREWDDDGNGALDRKEW 579
                 59*************9995 PP

  == domain 7  score: 1.2 bits;  conditional E-value: 0.34
  EF-hand_10  19 ddeYAekLFkkcDkSksgrLegeEiee 45 
                 +++  + +Fk  D   sg+Le  E++e
  KOO22689.1 739 EESDTNLVFKSLDADGSGQLEYAELNE 765
                 55556779**************99976 PP

  == domain 8  score: 1.9 bits;  conditional E-value: 0.21
  EF-hand_10  25 kLFkkcDkSksgrLegeEie 44 
                  LF++ D+  +g L+ +E+ 
  KOO22689.1 843 DLFREWDEDGNGGLDKKEFR 862
                 59****************86 PP

  == domain 9  score: 6.7 bits;  conditional E-value: 0.0065
  EF-hand_10   12 reiNievddeYAekLFkkcDkSksgrLegeEiee 45  
                   + Ni v      +LF++ Dk  +g L+ +E+  
  KOO22689.1  981 AMNNIKV-----LELFREWDKDGNGMLDKHELRR 1009
                  5555554.....57*****************976 PP

  == domain 10  score: -0.4 bits;  conditional E-value: 1.1
  EF-hand_10   25 kLFkkcDkSksgrLegeEie 44  
                   +F   D+S +g+ +  E++
  KOO22689.1 1025 AIFEAIDESGDGQVDFDEMK 1044
                  589999******99998886 PP

>> Peptidase_S9  Prolyl oligopeptidase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.1         5     5e+03      62      83 ..    1218    1239 ..    1215    1243 .. 0.86
   2 !   16.2   0.0   5.7e-06    0.0057     138     201 ..    1262    1322 ..    1255    1330 .. 0.81

  Alignments for each domain:
  == domain 1  score: -3.3 bits;  conditional E-value: 5
                    -GGGEEEEEETHHHHHHHHHHH CS
  Peptidase_S9   62 dserlaitGgSyGGyltgaaln 83  
                    d++rl++ G+  GG +++ a++
    KOO22689.1 1218 DTQRLVVGGTAQGGSVALHAAM 1239
                    889***********99988876 PP

  == domain 2  score: 16.2 bits;  conditional E-value: 5.7e-06
                    GG--.---EEEEEEETT-SSS-THHHHHHHHHHH--S-SEEEEEETTS-SSTTSSHHHHHHHHHH CS
  Peptidase_S9  138 dnvk.aypplLlihGlaDdrvppaealklvaaLqkkgknvlllifpdegHgvgkprakveelarl 201 
                    +n + +++p++++ G  D+ +p+ +  + +a L k g +++++++p+ gH + + + +    + +
    KOO22689.1 1262 ANSRlNQTPIFIFAGGRDSVCPLTHMQEAFAGLSKGGYKLEWHVEPGLGHTAESLNEQ----RYV 1322
                    4555689*******************************************65544333....333 PP

>> Caleosin  Caleosin related protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.3   0.0     0.017        17      13      38 ..     130     155 ..     120     178 .. 0.90
   2 ?   -0.5   0.1         1     1e+03      13      37 ..     265     289 ..     261     300 .. 0.92
   3 ?   -3.4   0.0       8.1     8e+03      87     113 ..     381     407 ..     380     413 .. 0.77
   4 ?    5.1   0.0      0.02        20      13      36 ..     432     455 ..     421     484 .. 0.92
   5 ?   -2.0   0.0         3     3e+03      13      36 ..     566     589 ..     563     593 .. 0.92
   6 ?   -3.2   0.0       6.9   6.9e+03      93     123 ..     593     623 ..     589     626 .. 0.87
   7 ?    6.0   0.0      0.01        10      13      39 ..     714     740 ..     705     751 .. 0.88
   8 ?    0.4   0.0      0.56   5.6e+02      13      45 ..     848     880 ..     844     893 .. 0.89
   9 ?   -0.3   0.0      0.91   9.1e+02      13      36 ..     994    1017 ..     986    1042 .. 0.78

  Alignments for each domain:
  == domain 1  score: 5.3 bits;  conditional E-value: 0.017
    Caleosin  13 fDrdkdGiiypldtyrgfralgfnvl 38 
                 +D+dk G i  ++ yr++++lgf v 
  KOO22689.1 130 WDEDKSGSIDKVEFYRAVKSLGFPVS 155
                 **********************9875 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 1
    Caleosin  13 fDrdkdGiiypldtyrgfralgfnv 37 
                 +D d +G +   +  +gf +lg+++
  KOO22689.1 265 WDDDGNGALDRKEWRKGFATLGYDA 289
                 9*********************986 PP

  == domain 3  score: -3.4 bits;  conditional E-value: 8.1
    Caleosin  87 eGrfvpqkfeeifskyakekkdaltlk 113
                 eG+f ++++ + f+  + +k+++++++
  KOO22689.1 381 EGNFKEEELKARFEWLDVDKSGQISMH 407
                 788888888888888888887777765 PP

  == domain 4  score: 5.1 bits;  conditional E-value: 0.02
    Caleosin  13 fDrdkdGiiypldtyrgfralgfn 36 
                 +D+dk G++   + ++++ralgf 
  KOO22689.1 432 WDEDKSGTVDKNEFFKAVRALGFP 455
                 **********************96 PP

  == domain 5  score: -2.0 bits;  conditional E-value: 3
    Caleosin  13 fDrdkdGiiypldtyrgfralgfn 36 
                 +D d +G +   +  +g+ alg++
  KOO22689.1 566 WDDDGNGALDRKEWRKGIAALGYD 589
                 9********************997 PP

  == domain 6  score: -3.2 bits;  conditional E-value: 6.9
    Caleosin  93 qkfeeifskyakekkdaltlkevlellkgqr 123
                 +  ++if+  +++ ++ ++++e+++ l+g+r
  KOO22689.1 593 KDIDAIFDSMNEDGNGFVEFEELKTALSGKR 623
                 5678999999999999999999999998887 PP

  == domain 7  score: 6.0 bits;  conditional E-value: 0.01
    Caleosin  13 fDrdkdGiiypldtyrgfralgfnvll 39 
                 +D+d +G +   + y+++ralgf v  
  KOO22689.1 714 WDEDGNGKVDAYEFYKAIRALGFPVEE 740
                 **********************98765 PP

  == domain 8  score: 0.4 bits;  conditional E-value: 0.56
    Caleosin  13 fDrdkdGiiypldtyrgfralgfnvllsllaal 45 
                 +D+d +G +   +  rg+ alg+++ ++ + a+
  KOO22689.1 848 WDEDGNGGLDKKEFRRGVAALGYKLPAAEIDAV 880
                 9**********************9988876665 PP

  == domain 9  score: -0.3 bits;  conditional E-value: 0.91
    Caleosin   13 fDrdkdGiiypldtyrgfralgfn 36  
                  +D+d +G++  ++  r++++lgf 
  KOO22689.1  994 WDKDGNGMLDKHELRRAVKTLGFV 1017
                  788888888777777777777775 PP

>> SPARC_Ca_bdg  Secreted protein acidic and rich in cysteine Ca binding region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.0       4.2   4.2e+03      49      73 ..      80     104 ..      59     146 .. 0.58
   2 ?   -1.9   0.0         4     4e+03      58      77 ..     161     180 ..     116     194 .. 0.68
   3 ?    0.6   0.1      0.67   6.7e+02      77     111 ..     245     279 ..     173     281 .. 0.72
   4 ?    3.0   1.2      0.12   1.2e+02      44     111 ..     379     446 ..     337     448 .. 0.80
   5 ?    0.7   0.0      0.65   6.4e+02      77     111 ..     546     580 ..     532     582 .. 0.82
   6 ?   -0.6   0.0       1.6   1.6e+03      60     109 ..     711     762 ..     698     765 .. 0.59
   7 ?   -3.0   0.0       8.8   8.8e+03      60      76 ..     845     861 ..     829     866 .. 0.79
   8 ?   10.0   0.0   0.00084      0.84      47     110 ..     978    1043 ..     950    1045 .. 0.78

  Alignments for each domain:
  == domain 1  score: -1.9 bits;  conditional E-value: 4.2
  SPARC_Ca_bdg  49 lkeckepvawkFsklDtnsdkvlsk 73 
                    k+++e+++ +F++lD+++ + ++ 
    KOO22689.1  80 GKHTEEELKARFDELDVDKTGWIEM 104
                   5556667777777777776555443 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 4
  SPARC_Ca_bdg  58 wkFsklDtnsdkvlsksELa 77 
                     F++lD +  + l+ +EL+
    KOO22689.1 161 IVFKTLDEDGSGNLEYKELS 180
                   34677777777777777775 PP

  == domain 3  score: 0.6 bits;  conditional E-value: 0.67
  SPARC_Ca_bdg  77 aplraplvklehCikpflescDadkdkkislkEwc 111
                   ++lr+ l ++      ++++ D d ++ +++kEw 
    KOO22689.1 245 EQLREILKRNSVMLIDLFREWDDDGNGALDRKEWR 279
                   45666667777777888999999999999999996 PP

  == domain 4  score: 3.0 bits;  conditional E-value: 0.12
  SPARC_Ca_bdg  44 eeeknlkeckepvawkFsklDtnsdkvlsksELaplraplvklehCikpflescDadkdkkislkEwc 111
                    ee n ke + ++++++ ++D+    ++ +  + +l+  l +  +    ++++ D dk ++++++E+ 
    KOO22689.1 379 REEGNFKEEELKARFEWLDVDKSGQISMHTYLMWSLKDCLTRASTRLVDLFRKWDEDKSGTVDKNEFF 446
                   45555555566666667666766777777777899*******************************97 PP

  == domain 5  score: 0.7 bits;  conditional E-value: 0.65
  SPARC_Ca_bdg  77 aplraplvklehCikpflescDadkdkkislkEwc 111
                   ++l + l k+      ++++ D d ++ +++kEw 
    KOO22689.1 546 EQLSEILKKNSVALIDLFREWDDDGNGALDRKEWR 580
                   56777788888888899999999999999999996 PP

  == domain 6  score: -0.6 bits;  conditional E-value: 1.6
  SPARC_Ca_bdg  60 FsklDtnsdkvlsksELa.plraplvklehC.ikpflescDadkdkkislkE 109
                   F  +D + ++ ++  E   ++ra   ++e+  ++  ++s Dad  ++++ +E
    KOO22689.1 711 FRAWDEDGNGKVDAYEFYkAIRALGFPVEESdTNLVFKSLDADGSGQLEYAE 762
                   6666777666677666641345444455544144456666666666666555 PP

  == domain 7  score: -3.0 bits;  conditional E-value: 8.8
  SPARC_Ca_bdg  60 FsklDtnsdkvlsksEL 76 
                   F ++D + ++ l+k+E 
    KOO22689.1 845 FREWDEDGNGGLDKKEF 861
                   78888888888888886 PP

  == domain 8  score: 10.0 bits;  conditional E-value: 0.00084
  SPARC_Ca_bdg   47 knlkeckepvawkFsklDtnsdkvlsksELaplrapl...vklehCikpflescDadkdkkislkEw 110 
                     +l++ + +v   F ++D++ +++l+k+EL+   ++l     +  C ++ +e+ D   d++++  E 
    KOO22689.1  978 AFLAMNNIKVLELFREWDKDGNGMLDKHELRRAVKTLgfvADVADC-DAIFEAIDESGDGQVDFDEM 1043
                    5555666666667*****************9877776221344556.6899***********99985 PP

>> EF-hand_4  Cytoskeletal-regulatory complex EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.1       3.7   3.7e+03      44      69 ..       9      34 ..       6      36 .. 0.82
   2 ?    7.0   0.4    0.0055       5.5      27      70 ..     328     377 ..     311     380 .. 0.62
   3 ?   -0.2   0.1      0.93   9.3e+02      45      66 ..     461     482 ..     424     490 .. 0.74
   4 ?    7.5   0.0    0.0039       3.9      49      70 ..     638     659 ..     591     660 .. 0.67
   5 ?    0.4   0.0      0.63   6.3e+02      25      71 ..     685     733 ..     667     758 .. 0.71
   6 ?    0.3   0.1      0.69   6.9e+02      46      65 ..    1024    1043 ..     982    1049 .. 0.78

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 3.7
   EF-hand_4 44 klekiwdladidedgkldfeefciam 69
                 ++ i+d  + d +g ++fee+ +a+
  KOO22689.1  9 DIDAIFDSMNGDGNGFIEFEELKVAL 34
                5677888888999999*****98875 PP

  == domain 2  score: 7.0 bits;  conditional E-value: 0.0055
   EF-hand_4  27 tgdkvapvlknsk.leedklekiwd...l.adided.gkldfeefciamr 70 
                 ++d++a+ lk+ k l++   + + +   l ad+ +d  ++dfe+fci ++
  KOO22689.1 328 KQDQAAAELKKRKsLKQASKKDVGEgkqLsADVTDDkSNVDFEDFCILIK 377
                 555655555443325555444443222242688555279********886 PP

  == domain 3  score: -0.2 bits;  conditional E-value: 0.93
   EF-hand_4  45 lekiwdladidedgkldfeefc 66 
                  +++++  did  g+l++ e++
  KOO22689.1 461 TDEVFKSLDIDGSGSLEYSELV 482
                 4567777788888888888876 PP

  == domain 4  score: 7.5 bits;  conditional E-value: 0.0039
   EF-hand_4  49 wdladidedgkldfeefciamr 70 
                  +l      g+ldfeefci +r
  KOO22689.1 638 ASLGGNKGQGSLDFEEFCILVR 659
                 4566667889*********887 PP

  == domain 5  score: 0.4 bits;  conditional E-value: 0.63
   EF-hand_4  25 kltgdkvap.vlknskle.edklekiwdladidedgkldfeefciamrl 71 
                 ++t  +  +  lk+  ++ +++l  ++   d d +gk+d  ef  a+r 
  KOO22689.1 685 MVTMAQYLTwSLKDGLMRsSQRLVDLFRAWDEDGNGKVDAYEFYKAIRA 733
                 4455554331456555541567899999999************988874 PP

  == domain 6  score: 0.3 bits;  conditional E-value: 0.69
   EF-hand_4   46 ekiwdladidedgkldfeef 65  
                  + i++  d   dg++df+e+
  KOO22689.1 1024 DAIFEAIDESGDGQVDFDEM 1043
                  56888888889*******97 PP

>> DLH  Dienelactone hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   8.5e-05     0.085      74     200 ..    1200    1324 ..    1172    1335 .. 0.77

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 8.5e-05
         DLH   74 aeekvlddlkaavaylksvpevstkkvgvvGfCmGGalalllaaev.pevdaavafYG.lspekeleeaakikapilalfgeeDefipadeveklee 168 
                  ++e++ ++l+ + a l+     +t++++v G   GG +al  a +  + + a +       ++ ++++ +  ++pi++++g++D + p  ++++   
  KOO22689.1 1200 QTERLHAILEREAAILR----GDTQRLVVGGTAQGGSVALHAAMKFrAPLGALLCLRTaPLLKFTVANSRLNQTPIFIFAGGRDSVCPLTHMQEAFA 1292
                  34555555544444443....46699*******************976688877666544778899999999************************* PP

         DLH  169 alkaanvdlelkvYpgagHaFandsresynee 200 
                   l++ + +le +v pg gH     +++ y+++
  KOO22689.1 1293 GLSKGGYKLEWHVEPGLGHTAESLNEQRYVAY 1324
                  *******************8766666666655 PP

>> APOBEC3  APOBEC3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.0   0.00057      0.57      23      91 ..      72     145 ..      60     151 .. 0.78
   2 ?   -0.6   0.0       1.3   1.3e+03      34      77 ..     386     432 ..     367     448 .. 0.70

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.00057
     APOBEC3  23 gyfkn.kekkHAEerfidkirslnldslkqykitcylsws..Pc.pkCaeelve.flkenselklsifasrlyr 91 
                 ++ k  +e kH Ee    ++ +l++d++   ++ +ylsws   c ++ +++lv+ flk  ++++ si+  + yr
  KOO22689.1  72 ILVKArEEGKHTEEELKARFDELDVDKTGWIEMAVYLSWSlkDCiARASTRLVDiFLKWDEDKSGSIDKVEFYR 145
                 4444435679*****************************94434356778899878888888888888877776 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 1.3
     APOBEC3  34 Eerfidkirslnldslkqykitcylsws..Pc.pkCaeelveflken 77 
                 Ee    +++ l++d++ q  +  yl ws   c  + +++lv+ +++ 
  KOO22689.1 386 EEELKARFEWLDVDKSGQISMHTYLMWSlkDClTRASTRLVDLFRKW 432
                 555556677789999999999******94434234566788766654 PP

>> LIP  Secretory lipase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0   0.00026      0.26     210     275 ..    1263    1327 ..    1252    1337 .. 0.87

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00026
         LIP  210 ksavPqiPvlvyhgvidelipikdakklaknwcdkgiaslefaedlssgHlaetlvgapaaltWit 275 
                  +s + q+P++++ g  d++ p++ +++      ++g  +le++ +   gH+ae+l ++     W+ 
  KOO22689.1 1263 NSRLNQTPIFIFAGGRDSVCPLTHMQEAFAGLSKGG-YKLEWHVEPGLGHTAESLNEQRYVAYWVA 1327
                  566789******************999998887666.6*****************99998888874 PP

>> FRG1  FRG1-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.8   1.7    0.0098       9.7     131     183 ..      35      90 ..      20      97 .. 0.83
   2 ?    9.9   1.7   0.00057      0.56     116     183 ..     325     392 ..     290     399 .. 0.60

  Alignments for each domain:
  == domain 1  score: 5.8 bits;  conditional E-value: 0.0098
        FRG1 131 vedreklrekeskyvkkfqk.iqdkkl..rldkedvkrlkkarkeGnlhEvlLDrr 183
                  ++r k+  +e+++ k++q+  +dk+   +ld  +++ l kar+eG+  E+ L  r
  KOO22689.1  35 SDARIKIAAAEKAEQKRKQDgTGDKEGesKLDVAQFSILVKAREEGKHTEEELKAR 90 
                 57899999999999999885266776677******************999988766 PP

  == domain 2  score: 9.9 bits;  conditional E-value: 0.00057
        FRG1 116 Rsdaeregktkdrirvedreklrekeskyv...kk.fqkiqdkklrldkedvkrlkkarkeGnlhEvlLDrr 183
                 R+ ++ +   + +    +r+ l+++ +k v   k+  +++ d k  +d ed+  l kar+eGn+ E+ L  r
  KOO22689.1 325 RAAKQDQAAAELK----KRKSLKQASKKDVgegKQlSADVTDDKSNVDFEDFCILIKAREEGNFKEEELKAR 392
                 3322222222222....2222222222222100321336666666*********************998777 PP

>> DRY_EERY  Alternative splicing regulator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.3   0.1     0.011        11      53     107 ..      42      96 ..      32     122 .. 0.81
   2 ?    3.6   0.3     0.076        76      59     102 ..     350     393 ..     326     409 .. 0.74
   3 ?   -2.3   0.0         5     5e+03      59     101 ..     632     674 ..     618     685 .. 0.68

  Alignments for each domain:
  == domain 1  score: 6.3 bits;  conditional E-value: 0.011
    DRY_EERY  53 akkeekkarseeksseeeeeeeelnyERYrdLiknefeevseeeelkqiaeeesf 107
                 a++e+++++++++   ++e e++l+   + +L+k ++e+ + eeelk   +e+ +
  KOO22689.1  42 AAAEKAEQKRKQDGTGDKEGESKLDVAQFSILVKAREEGKHTEEELKARFDELDV 96 
                 3333345667778899999**********************99999988887765 PP

  == domain 2  score: 3.6 bits;  conditional E-value: 0.076
    DRY_EERY  59 karseeksseeeeeeeelnyERYrdLiknefeevseeeelkqia 102
                   + ++ s++  ++++++++E + +Lik ++e+  +eeelk   
  KOO22689.1 350 VGEGKQLSADVTDDKSNVDFEDFCILIKAREEGNFKEEELKARF 393
                 2344556677778888***************9998999998655 PP

  == domain 3  score: -2.3 bits;  conditional E-value: 5
    DRY_EERY  59 karseeksseeeeeeeelnyERYrdLiknefeevseeeelkqi 101
                 k ++++ s   ++ +  l++E + +L++ ++e+    eelk  
  KOO22689.1 632 KVKEKRASLGGNKGQGSLDFEEFCILVRGREEGEIPAEELKAR 674
                 344444444555566699********99999998877777655 PP

>> BPL_LplA_LipB_2  Biotin/lipoate A/B protein ligase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.0       5.1   5.1e+03     162     181 ..     259     279 ..     247     280 .. 0.75
   2 ?   -3.3   0.0       5.5   5.5e+03     162     181 ..     560     580 ..     548     581 .. 0.76
   3 ?    9.6   0.0   0.00061      0.61      10      56 ..    1085    1131 ..    1079    1134 .. 0.87

  Alignments for each domain:
  == domain 1  score: -3.2 bits;  conditional E-value: 5.1
  BPL_LplA_LipB_2 162 lawinrweedGfrpvha.ewl 181
                      +  +++w++dG+ ++ + ew+
       KOO22689.1 259 IDLFREWDDDGNGALDRkEWR 279
                      567889******999642676 PP

  == domain 2  score: -3.3 bits;  conditional E-value: 5.5
  BPL_LplA_LipB_2 162 lawinrweedGfrpvha.ewl 181
                      +  +++w++dG+ ++ + ew+
       KOO22689.1 560 IDLFREWDDDGNGALDRkEWR 580
                      567899******999642676 PP

  == domain 3  score: 9.6 bits;  conditional E-value: 0.00061
  BPL_LplA_LipB_2   10 veggedpfakAvaaaaegcdagtvvyslaadlleaAlvlaPevplak 56  
                       ++ + +++ak +a +++g+dag ++++ + ++++  ++l+Pev+ a+
       KOO22689.1 1085 IAFQVEAAAKILANLRKGEDAGELIFEPHGEHTHTVVMLHPEVSTAE 1131
                       55567888999999*****************************9876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1529 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       611  (0.0340789); expected 358.6 (0.02)
Passed bias filter:                      432  (0.024095); expected 358.6 (0.02)
Passed Vit filter:                        54  (0.00301188); expected 17.9 (0.001)
Passed Fwd filter:                        18  (0.00100396); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              18  [number of targets reported over threshold]
# CPU time: 0.97u 0.30s 00:00:01.27 Elapsed: 00:00:00.44
# Mc/sec: 10333.17
//
Query:       KOO22690.1  [L=80]
Description: hypothetical protein Ctob_007198 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (80 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       530  (0.029561); expected 358.6 (0.02)
Passed bias filter:                      363  (0.0202465); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.25s 00:00:00.58 Elapsed: 00:00:00.38
# Mc/sec: 633.33
//
Query:       KOO22691.1  [L=748]
Description: flagellar calcium-binding protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    6.5e-24   84.2  21.0    1.1e-06   29.0   0.5    7.4  6  EF-hand_7   EF-hand domain pair
    3.2e-23   79.6  18.0     0.0077   16.1   0.1    8.3  8  EF-hand_6   EF-hand domain
    1.3e-21   74.4  16.3     0.0014   18.0   0.0    8.4  8  EF-hand_1   EF hand
      3e-12   45.4  11.4       0.28   10.8   0.0    7.1  7  EF-hand_5   EF hand
    2.8e-09   36.7  21.9     0.0087   15.9   1.4    7.3  8  EF-hand_8   EF-hand domain pair
  ------ inclusion threshold ------
      0.041   13.6   0.0        4.8    7.0   0.0    3.1  3  GPHH        Voltage-dependent L-type calcium channel, IQ-asso
      0.042   13.7   0.2         44    4.0   0.0    4.3  4  EF-hand_10  EF hand
       0.16   11.8   2.9        0.8    9.6   0.3    2.8  3  HrcA        HrcA protein C terminal domain


Domain annotation for each model (and alignments):
>> EF-hand_7  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.3   0.0   0.00033      0.75      48      69 ..      40      61 ..      28      63 .. 0.82
   2 !   10.5   0.2   0.00028      0.64       7      28 ..      41      62 ..      38     118 .. 0.59
   3 !   29.0   0.5   4.8e-10   1.1e-06       7      69 ..     129     190 ..     123     192 .. 0.87
   4 !   12.6   0.5   6.6e-05      0.15      19      66 ..     334     380 ..     332     385 .. 0.82
   5 !   22.3   1.6   6.2e-08   0.00014       3      70 ..     399     523 ..     397     524 .. 0.83
   6 !   13.0   0.0   4.8e-05      0.11       4      42 ..     539     577 ..     536     604 .. 0.75

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.00033
   EF-hand_7 48 llfkefDtdkdGvisfdEFlkl 69
                +lfk fD +++Gv+s+ E  k+
  KOO22691.1 40 DLFKRFDVNSNGVLSLAEVDKA 61
                79999*********99997665 PP

  == domain 2  score: 10.5 bits;  conditional E-value: 0.00028
   EF-hand_7  7 aFkelDtdgdgyldkeellrll 28
                 Fk +D++ +g l+ +e+ +++
  KOO22691.1 41 LFKRFDVNSNGVLSLAEVDKAV 62
                3555555555555555555533 PP

  == domain 3  score: 29.0 bits;  conditional E-value: 4.8e-10
   EF-hand_7   7 aFkelDtdgdgyldkeellrllrkifqgagegsklsdeelellfkefDtdkdGvisfdEFlkl 69 
                 aF+ +D++ d +l+ ee++ ++++  +    g ++ +ee++++f  +D+++ + + fdEF+++
  KOO22691.1 129 AFNRMDVNPDHRLTLEEFRLAVTN-GTLSKFGINVKEEEVDTVFASIDSNDGDFVLFDEFCHW 190
                 7******************65554.444488889999************************98 PP

  == domain 4  score: 12.6 bits;  conditional E-value: 6.6e-05
   EF-hand_7  19 ldkeellrllrkifqga.gegsklsdeelellfkefDtdkdGvisfdEF 66 
                 l++e++ +l +k++++  g++ +l+     +lfk +D d++++isf+E+
  KOO22691.1 334 LSEEDVVSLSKKFNDALkGRDPDLR--NFFTLFKSMDMDGSRRISFNEL 380
                 7889989899999988655555544..589*****************97 PP

  == domain 5  score: 22.3 bits;  conditional E-value: 6.2e-08
   EF-hand_7   3 klkeaFkelDtdgdgyldkeellrllrkifqga............................................................gegskl 41 
                 +l   +k+lD + +g++d  el r+lr i q++                                                               + +
  KOO22691.1 399 QLLALWKKLDENASGFIDAGELSRFLR-IGQSNeltpaqrarkklqqarlaekerlreesrkrlernvadksqtvekateeemarfakifnekL--KGS 494
                 778889********************9.788889*******************************99999999888877777777766664222..222 PP

   EF-hand_7  42 sdeelellfkefDtdkdGvisfdEFlkly 70 
                 + +   +lfk +D d +G++ fdEF  ++
  KOO22691.1 495 DITNFFALFKWMDMDASGKVKFDEFDSMV 523
                 225588888888*************7665 PP

  == domain 6  score: 13.0 bits;  conditional E-value: 4.8e-05
   EF-hand_7   4 lkeaFkelDtdgdgyldkeellrllrkifqga....gegskls 42 
                 l+  + ++D +++g+++  e+ +++r+ ++++    +    l+
  KOO22691.1 539 LFSLWAAIDENQNGFISSGEFVHFMRSASAQIdeseR----LD 577
                 6677899*************999***98877744442....33 PP

>> EF-hand_6  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.1   3.4e-06    0.0077       4      28 ..      40      64 ..      36      71 .. 0.90
   2 ?    0.3   0.0      0.39   8.8e+02      12      26 ..     103     117 ..     102     120 .. 0.87
   3 !   13.6   0.0   2.2e-05     0.049       4      27 ..     128     151 ..     125     159 .. 0.88
   4 ?    1.6   0.4      0.16   3.5e+02       3      24 ..     168     189 ..     166     199 .. 0.84
   5 !    9.5   0.2   0.00043      0.97       2      27 ..     360     385 ..     359     391 .. 0.86
   6 !   15.0   0.0   7.7e-06     0.017       2      27 ..     400     425 ..     399     428 .. 0.91
   7 !   12.7   0.2   4.2e-05     0.095       2      28 ..     499     525 ..     498     532 .. 0.90
   8 !   15.4   0.0   5.7e-06     0.013       2      27 ..     539     564 ..     538     569 .. 0.91

  Alignments for each domain:
  == domain 1  score: 16.1 bits;  conditional E-value: 3.4e-06
   EF-hand_6  4 eaFklfDkdgdGkidaeElrkalrk 28
                ++Fk fD++ +G ++ +E+ ka r+
  KOO22691.1 40 DLFKRFDVNSNGVLSLAEVDKAVRD 64
                79********************996 PP

  == domain 2  score: 0.3 bits;  conditional E-value: 0.39
   EF-hand_6  12 dgdGkidaeElrkal 26 
                 ++d ++ ++E+r +l
  KOO22691.1 103 SRDDYVERDEFRLLL 117
                 5899*******9877 PP

  == domain 3  score: 13.6 bits;  conditional E-value: 2.2e-05
   EF-hand_6   4 eaFklfDkdgdGkidaeElrkalr 27 
                  aF+ +D++ d  ++ eE+r a +
  KOO22691.1 128 VAFNRMDVNPDHRLTLEEFRLAVT 151
                 69******************9987 PP

  == domain 4  score: 1.6 bits;  conditional E-value: 0.16
   EF-hand_6   3 reaFklfDkdgdGkidaeElrk 24 
                 + +F  +D ++  ++ ++E+ +
  KOO22691.1 168 DTVFASIDSNDGDFVLFDEFCH 189
                 679*****99888999999987 PP

  == domain 5  score: 9.5 bits;  conditional E-value: 0.00043
   EF-hand_6   2 lreaFklfDkdgdGkidaeElrkalr 27 
                 +  +Fk +D dg+  i+++El  + r
  KOO22691.1 360 FFTLFKSMDMDGSRRISFNELDVLVR 385
                 6789****************976666 PP

  == domain 6  score: 15.0 bits;  conditional E-value: 7.7e-06
   EF-hand_6   2 lreaFklfDkdgdGkidaeElrkalr 27 
                 l +++k++D + +G+ida El ++lr
  KOO22691.1 400 LLALWKKLDENASGFIDAGELSRFLR 425
                 56799*******************99 PP

  == domain 7  score: 12.7 bits;  conditional E-value: 4.2e-05
   EF-hand_6   2 lreaFklfDkdgdGkidaeElrkalrk 28 
                 + ++Fk +D d +Gk+ ++E+ ++ rk
  KOO22691.1 499 FFALFKWMDMDASGKVKFDEFDSMVRK 525
                 7899*******************9996 PP

  == domain 8  score: 15.4 bits;  conditional E-value: 5.7e-06
   EF-hand_6   2 lreaFklfDkdgdGkidaeElrkalr 27 
                 l +++ ++D + +G+i+  E+++++r
  KOO22691.1 539 LFSLWAAIDENQNGFISSGEFVHFMR 564
                 678999*******************9 PP

>> EF-hand_1  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.9   0.0   2.7e-05     0.061       4      27 ..      40      63 ..      39      65 .. 0.89
   2 ?    1.1   0.0      0.16   3.7e+02      13      26 ..     104     117 ..     102     118 .. 0.87
   3 !    8.2   0.0   0.00088         2       5      27 ..     129     151 ..     125     153 .. 0.90
   4 ?    3.1   0.3     0.036        80       1      25 [.     166     190 ..     166     193 .. 0.91
   5 !   13.2   0.1   2.2e-05     0.049       5      28 ..     363     386 ..     360     387 .. 0.88
   6 !   12.0   0.0   5.3e-05      0.12       4      27 ..     402     425 ..     399     426 .. 0.90
   7 !    9.2   0.4   0.00041      0.91       9      28 ..     506     525 ..     499     526 .. 0.89
   8 !   18.0   0.0   6.4e-07    0.0014       5      28 ..     542     565 ..     539     566 .. 0.91

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 2.7e-05
                HHHHHHTTTSSSEEEHHHHHHHHH CS
   EF-hand_1  4 eiFrefDkDgdGkIdfeEfkellk 27
                ++F+ fD++ +G +++ E  ++++
  KOO22691.1 40 DLFKRFDVNSNGVLSLAEVDKAVR 63
                58****************988876 PP

  == domain 2  score: 1.1 bits;  conditional E-value: 0.16
                 SSSEEEHHHHHHHH CS
   EF-hand_1  13 gdGkIdfeEfkell 26 
                 +d +++++Ef+ ll
  KOO22691.1 104 RDDYVERDEFRLLL 117
                 699*******9876 PP

  == domain 3  score: 8.2 bits;  conditional E-value: 0.00088
                 HHHHHTTTSSSEEEHHHHHHHHH CS
   EF-hand_1   5 iFrefDkDgdGkIdfeEfkellk 27 
                 +F+ +D++ d ++++eEf+ +++
  KOO22691.1 129 AFNRMDVNPDHRLTLEEFRLAVT 151
                 8******************9986 PP

  == domain 4  score: 3.1 bits;  conditional E-value: 0.036
                 HHHHHHHHHTTTSSSEEEHHHHHHH CS
   EF-hand_1   1 elkeiFrefDkDgdGkIdfeEfkel 25 
                 e++ +F+ +D +   ++ f+Ef+++
  KOO22691.1 166 EVDTVFASIDSNDGDFVLFDEFCHW 190
                 68999*****************987 PP

  == domain 5  score: 13.2 bits;  conditional E-value: 2.2e-05
                 HHHHHTTTSSSEEEHHHHHHHHHH CS
   EF-hand_1   5 iFrefDkDgdGkIdfeEfkellkk 28 
                 +F+ +D Dg+ +I+f+E+  l+++
  KOO22691.1 363 LFKSMDMDGSRRISFNELDVLVRH 386
                 7*****************888775 PP

  == domain 6  score: 12.0 bits;  conditional E-value: 5.3e-05
                 HHHHHHTTTSSSEEEHHHHHHHHH CS
   EF-hand_1   4 eiFrefDkDgdGkIdfeEfkellk 27 
                  +++++D + +G+Id  E+ ++l+
  KOO22691.1 402 ALWKKLDENASGFIDAGELSRFLR 425
                 689****************99986 PP

  == domain 7  score: 9.2 bits;  conditional E-value: 0.00041
                 HTTTSSSEEEHHHHHHHHHH CS
   EF-hand_1   9 fDkDgdGkIdfeEfkellkk 28 
                 +D D +Gk+ f+Ef ++++k
  KOO22691.1 506 MDMDASGKVKFDEFDSMVRK 525
                 8***************9987 PP

  == domain 8  score: 18.0 bits;  conditional E-value: 6.4e-07
                 HHHHHTTTSSSEEEHHHHHHHHHH CS
   EF-hand_1   5 iFrefDkDgdGkIdfeEfkellkk 28 
                 +++ +D +++G+I+  Ef++++++
  KOO22691.1 542 LWAAIDENQNGFISSGEFVHFMRS 565
                 68899*****************96 PP

>> EF-hand_5  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.8   0.0   0.00013      0.28       3      20 ..      40      57 ..      39      62 .. 0.91
   2 ?   -3.0   0.0       2.8   6.2e+03      16      24 ..     108     116 ..     107     117 .. 0.79
   3 ?    3.8   0.0      0.02        45       3      22 ..     129     147 ..     127     150 .. 0.88
   4 !    6.8   0.1    0.0022       4.9       4      23 ..     363     382 ..     362     384 .. 0.88
   5 !   10.2   0.1   0.00018      0.41       6      25 .]     405     424 ..     405     424 .. 0.92
   6 !    5.4   0.2    0.0061        14       4      24 ..     502     522 ..     501     523 .. 0.85
   7 !    9.5   0.0    0.0003      0.68       7      25 .]     545     563 ..     544     563 .. 0.89

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00013
                HHHHHH-SS-SSCE-HHH CS
   EF-hand_5  3 dtFqaiDlNgDGkIskeE 20
                d+F+++D+N  G +s  E
  KOO22691.1 40 DLFKRFDVNSNGVLSLAE 57
                89*************998 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 2.8
                 E-HHHHHHH CS
   EF-hand_5  16 IskeELktl 24 
                 + ++E++ l
  KOO22691.1 108 VERDEFRLL 116
                 6899**976 PP

  == domain 3  score: 3.8 bits;  conditional E-value: 0.02
                 HHHHHH-SS-SSCE-HHHHH CS
   EF-hand_5   3 dtFqaiDlNgDGkIskeELk 22 
                 + F+++D+N D +++ eE++
  KOO22691.1 129 A-FNRMDVNPDHRLTLEEFR 147
                 6.*********999999997 PP

  == domain 4  score: 6.8 bits;  conditional E-value: 0.0022
                 HHHHH-SS-SSCE-HHHHHH CS
   EF-hand_5   4 tFqaiDlNgDGkIskeELkt 23 
                 +F+ +D++g+ +Is+ EL  
  KOO22691.1 363 LFKSMDMDGSRRISFNELDV 382
                 69***************965 PP

  == domain 5  score: 10.2 bits;  conditional E-value: 0.00018
                 HHH-SS-SSCE-HHHHHHHH CS
   EF-hand_5   6 qaiDlNgDGkIskeELktlv 25 
                 +++D N +G+I++ EL +++
  KOO22691.1 405 KKLDENASGFIDAGELSRFL 424
                 589*************9985 PP

  == domain 6  score: 5.4 bits;  conditional E-value: 0.0061
                 HHHHH-SS-SSCE-HHHHHHH CS
   EF-hand_5   4 tFqaiDlNgDGkIskeELktl 24 
                 +F+ +D++ +Gk+ ++E+  +
  KOO22691.1 502 LFKWMDMDASGKVKFDEFDSM 522
                 68889************9766 PP

  == domain 7  score: 9.5 bits;  conditional E-value: 0.0003
                 HH-SS-SSCE-HHHHHHHH CS
   EF-hand_5   7 aiDlNgDGkIskeELktlv 25 
                 aiD N+ G+Is  E+  ++
  KOO22691.1 545 AIDENQNGFISSGEFVHFM 563
                 89************97765 PP

>> EF-hand_8  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.2   0.1     0.017        39      30      47 ..      40      57 ..      39      59 .. 0.93
   2 ?   -4.0   0.0       6.3   1.4e+04       3      12 ..     106     115 ..     105     118 .. 0.71
   3 ?    0.1   0.0      0.32   7.3e+02      30      48 ..     128     146 ..     125     152 .. 0.86
   4 !    8.9   0.7   0.00059       1.3       4      49 ..     140     188 ..     137     189 .. 0.83
   5 !    9.6   0.2   0.00035      0.78      28      54 ..     360     386 ..     350     387 .. 0.89
   6 ?    1.4   0.0      0.13   2.9e+02       2      19 ..     412     428 ..     411     436 .. 0.78
   7 !   15.9   1.4   3.9e-06    0.0087      27      52 ..     498     523 ..     476     526 .. 0.72
   8 !    6.5   0.0    0.0032       7.2      10      53 ..     522     564 ..     519     566 .. 0.83

  Alignments for each domain:
  == domain 1  score: 4.2 bits;  conditional E-value: 0.017
   EF-hand_8 30 ilfrefDtdgdGkisfeE 47
                +lf++fD + +G++s+ E
  KOO22691.1 40 DLFKRFDVNSNGVLSLAE 57
                59*************998 PP

  == domain 2  score: -4.0 bits;  conditional E-value: 6.3
   EF-hand_8   3 gkItreelrr 12 
                 +++ r+e+r 
  KOO22691.1 106 DYVERDEFRL 115
                 6778888875 PP

  == domain 3  score: 0.1 bits;  conditional E-value: 0.32
   EF-hand_8  30 ilfrefDtdgdGkisfeEF 48 
                 + f+++D + d ++++eEF
  KOO22691.1 128 VAFNRMDVNPDHRLTLEEF 146
                 5699999999999999999 PP

  == domain 4  score: 8.9 bits;  conditional E-value: 0.00059
   EF-hand_8   4 kItreelrrilrilglkk...glseeevdilfrefDtdgdGkisfeEFc 49 
                  +t ee+r +++   l k    + eeevd++f  +D ++   + f+EFc
  KOO22691.1 140 RLTLEEFRLAVTNGTLSKfgiNVKEEEVDTVFASIDSNDGDFVLFDEFC 188
                 5788888888877544446666*****************9999999999 PP

  == domain 5  score: 9.6 bits;  conditional E-value: 0.00035
   EF-hand_8  28 vdilfrefDtdgdGkisfeEFcvller 54 
                 + +lf+ +D+dg+ +isf+E  vl+ +
  KOO22691.1 360 FFTLFKSMDMDGSRRISFNELDVLVRH 386
                 679*****************9887776 PP

  == domain 6  score: 1.4 bits;  conditional E-value: 0.13
   EF-hand_8   2 kgkItreelrrilrilgl 19 
                 +g I+  el+r+lri g+
  KOO22691.1 412 SGFIDAGELSRFLRI-GQ 428
                 799**********98.43 PP

  == domain 7  score: 15.9 bits;  conditional E-value: 3.9e-06
   EF-hand_8  27 evdilfrefDtdgdGkisfeEFcvll 52 
                 ++ +lf+ +D+d +Gk++f+EF  ++
  KOO22691.1 498 NFFALFKWMDMDASGKVKFDEFDSMV 523
                 3889******************6665 PP

  == domain 8  score: 6.5 bits;  conditional E-value: 0.0032
   EF-hand_8  10 lrrilrilglkk.glseeevdilfrefDtdgdGkisfeEFcvlle 53 
                 ++r  ++l+ ++  +s+ ++ +l  ++D++++G is  EF+ ++ 
  KOO22691.1 522 MVR--KALKVAHsEVSNANLFSLWAAIDENQNGFISSGEFVHFMR 564
                 444..6667677889*************************99885 PP

>> GPHH  Voltage-dependent L-type calcium channel, IQ-associated
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.6   0.0      0.05   1.1e+02       5      27 ..     403     425 ..     401     445 .. 0.87
   2 ?   -2.4   0.0       1.8   4.1e+03       8      28 ..     505     525 ..     504     526 .. 0.85
   3 ?    7.0   0.0    0.0021       4.8       5      30 ..     542     567 ..     540     569 .. 0.90

  Alignments for each domain:
  == domain 1  score: 2.6 bits;  conditional E-value: 0.05
        GPHH   5 vWaeyDPeAtgrikvqdmyellr 27 
                  W + D +A+g+i + ++  +lr
  KOO22691.1 403 LWKKLDENASGFIDAGELSRFLR 425
                 6999***********99999998 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 1.8
        GPHH   8 eyDPeAtgrikvqdmyellrr 28 
                 ++D  A+g +k ++  +++r+
  KOO22691.1 505 WMDMDASGKVKFDEFDSMVRK 525
                 56889******9999999886 PP

  == domain 3  score: 7.0 bits;  conditional E-value: 0.0021
        GPHH   5 vWaeyDPeAtgrikvqdmyellrrls 30 
                  Wa +D +++g+i+  + + ++r+ s
  KOO22691.1 542 LWAAIDENQNGFISSGEFVHFMRSAS 567
                 7******************9999865 PP

>> EF-hand_10  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.0      0.97   2.2e+03      26      44 ..      41      59 ..      39      63 .. 0.85
   2 ?   -3.5   0.0       4.6     1e+04      26      43 ..     363     380 ..     362     386 .. 0.49
   3 ?    3.7   0.0     0.025        57      25      48 ..     402     425 ..     394     426 .. 0.91
   4 ?    4.0   0.0      0.02        44      17      48 ..     533     564 ..     513     565 .. 0.80

  Alignments for each domain:
  == domain 1  score: -1.4 bits;  conditional E-value: 0.97
  EF-hand_10 26 LFkkcDkSksgrLegeEie 44
                LFk+ D   +g L   E+ 
  KOO22691.1 41 LFKRFDVNSNGVLSLAEVD 59
                9******999999888875 PP

  == domain 2  score: -3.5 bits;  conditional E-value: 4.6
  EF-hand_10  26 LFkkcDkSksgrLegeEi 43 
                 LFk  D   s r+  +E+
  KOO22691.1 363 LFKSMDMDGSRRISFNEL 380
                 555555554444444443 PP

  == domain 3  score: 3.7 bits;  conditional E-value: 0.025
  EF-hand_10  25 kLFkkcDkSksgrLegeEieeFyk 48 
                  L kk D+ +sg+++  E+  F++
  KOO22691.1 402 ALWKKLDENASGFIDAGELSRFLR 425
                 589*******************98 PP

  == domain 4  score: 4.0 bits;  conditional E-value: 0.02
  EF-hand_10  17 evddeYAekLFkkcDkSksgrLegeEieeFyk 48 
                 ev++   ++L    D+ ++g++   E+++F++
  KOO22691.1 533 EVSNANLFSLWAAIDENQNGFISSGEFVHFMR 564
                 66666667888999****************98 PP

>> HrcA  HrcA protein C terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.8   0.0      0.17   3.9e+02      62      86 ..     330     354 ..     263     386 .. 0.88
   2 ?    9.6   0.3   0.00036       0.8      58     118 ..     470     531 ..     458     602 .. 0.76
   3 ?   -1.2   0.3      0.69   1.5e+03      66     126 ..     580     641 ..     554     657 .. 0.52

  Alignments for each domain:
  == domain 1  score: 0.8 bits;  conditional E-value: 0.17
        HrcA  62 lpeevseeelaklsnllneklaglt 86 
                 + ee+see++  ls+ +n++l+g++
  KOO22691.1 330 FAEELSEEDVVSLSKKFNDALKGRD 354
                 5689999999999999999999986 PP

  == domain 2  score: 9.6 bits;  conditional E-value: 0.00036
        HrcA  58 rllelpeevseeelaklsnllneklagltlseiaerlreeklkeels....eyeelleqlleale 118
                 +++   e+ +eee+a++++++nekl+g ++++  + +++  ++   +    e +++++++l++++
  KOO22691.1 470 QTV---EKATEEEMARFAKIFNEKLKGSDITNFFALFKWMDMDASGKvkfdEFDSMVRKALKVAH 531
                 344...4678888*******************999999998887777654443477777777553 PP

  == domain 3  score: -1.2 bits;  conditional E-value: 0.69
        HrcA  66 vseeelaklsnllneklagltlseiaerlreeklkeels..eye.elleqllealeealersee 126
                 v  e+ ++l++  + +  g++ + ++ r  +  +++ ++  + e e +e+l+  +e++ ++s++
  KOO22691.1 580 VAAESTQRLAEQATLAQIGKEETWARVRATQA-VQKAKAmeA-EtERIERLMADFEALRKKSDK 641
                 44444444444333333333322233322222.222222212.247777777777666665554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (748 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1595  (0.088962); expected 358.6 (0.02)
Passed bias filter:                      514  (0.0286686); expected 358.6 (0.02)
Passed Vit filter:                        58  (0.00323498); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.69u 0.27s 00:00:00.96 Elapsed: 00:00:00.40
# Mc/sec: 5584.08
//
Query:       KOO22692.1  [L=306]
Description: manganese-dependent ADP-ribose cdp-alcohol diphosphatase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    7.8e-05   23.3   0.0    0.00013   22.6   0.0    1.3  1  Metallophos  Calcineurin-like phosphoesterase


Domain annotation for each model (and alignments):
>> Metallophos  Calcineurin-like phosphoesterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.6   0.0   7.1e-09   0.00013      40     202 ..      11     214 ..       6     216 .. 0.58

  Alignments for each domain:
  == domain 1  score: 22.6 bits;  conditional E-value: 7.1e-09
                  ESTSSSSS....HHHHHHHHH.HHHHHHHTSEEEEEC-TTS............................................CHHHHHHHHHHHH CS
  Metallophos  40 aGDlvdrg....dlekellel.laalvkypipvylllGNHe............................................gfeeellnkygyl 88 
                  +GD++d+     + +k  le  la+l + p p + + GNHe                                            g            
   KOO22692.1  11 LGDIIDGInaklGQSKTALEAaLAELERAPCPSVNIVGNHElynfdraalaqapwlrhgdreyysfapapgwrmvildpyqlaliG------------ 96 
                  4******99988666666666566666668899********998888877776655444444444444443333333333333332............ PP

                  HHHHHHHEHH........................HCEEETSEEEEEETTEEEEEEEESECEEETHHHHHHHHHHHSCHHHHCC....HHHHHH..HHH CS
  Metallophos  89 gifsepwrsd........................aevfnnlplaslgsgslkvlllhGgspellvsldklgslnleleapepg....dewlkd..lek 156
                                                    +e ++++  +s  +   +++ ++Gg                              wl+     +
   KOO22692.1  97 ---------HaqedprrqesvaligaknpgvdpsGEGGQWFAQVSGED--RRFVPYNGG-----------------------LgreqLAWLRAelGAA 160
                  .........022222222222222222222222233333333333222..355555555.......................03344999999***** PP

                  HTTCSEEEEEESSESS.....CSSSCSCCHHHHHHH.HHHTT..ESEEEEESSS CS
  Metallophos 157 rekadwvivlgHsply.....rgsgylfgdealedl.lkkyg..vdlvisGHtH 202
                   + ++ v++l+H+ l+          +  +eal+ +  ++ g  v +v++GH+H
   KOO22692.1 161 SAAGERVLILSHVILHpracgGDTMVWDYPEALAAIsSEEAGgcVVAVLCGHDH 214
                  ****************9999744444444445554444444459999******* PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (306 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       322  (0.0179597); expected 358.6 (0.02)
Passed bias filter:                      286  (0.0159518); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.22s 00:00:00.60 Elapsed: 00:00:00.34
# Mc/sec: 2660.51
//
Query:       KOO22693.1  [L=294]
Description: hypothetical protein Ctob_007196 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    4.2e-23   82.2   0.0    4.8e-12   46.6   0.0    3.4  2  Lumazine_bd_2  Putative lumazine-binding
     0.0036   17.7   0.0      0.078   13.4   0.0    2.2  2  DUF4440        Domain of unknown function (DUF4440)


Domain annotation for each model (and alignments):
>> Lumazine_bd_2  Putative lumazine-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.6   0.0   5.3e-16   4.8e-12       4     116 .]       7     134 ..       5     134 .. 0.81
   2 !   30.2   0.0   6.5e-11   5.8e-07       7     113 ..     157     277 ..     151     278 .. 0.82

  Alignments for each domain:
  == domain 1  score: 46.6 bits;  conditional E-value: 5.3e-16
                    HHHHHHHHHHHHHHHHT-HHHHHHHEEEEEEEEE.ECTCEEEEEECHHHHHHHHHHH..-TT-EE-.EEEEEEEEETT.EEEEEEEEEETT..... CS
  Lumazine_bd_2   4 aaieavledYfdglaegdaaklrkafhpdaalvg.vtkgelremsleellalvaerespakegdprekeIesidvagd.vAmvkvelelpd..... 92 
                    +a+ +vl++Yf +l+e+ +ak+ ++ hp+ +l g    g+++++  ee+la v++r+++ +e +  +++I+s+++ +   A++kv++ lp      
     KOO22693.1   7 SAVVDVLKTYFAALHESSEAKFHQMWHPRGILLGiGPSGTVVARGSEEFLAGVTKRAPS-TELA-AHDRILSLEMIDGtCASAKVQVALPPspdsp 100
                    699*******************************77789*****************874.4444.458******998879*****98765312222 PP

                    ......EEEEEEEEEEE....ETTEEEEEEEEEE CS
  Lumazine_bd_2  93 ......enftDyLslvk....idgeWkIvnkvfh 116
                          + +tD L+l++     +g+W+I++kv++
     KOO22693.1 101 tptlseTLYTDWLTLLHdpsiDGGSWRIISKVYS 134
                    22222268********844434789*******96 PP

  == domain 2  score: 30.2 bits;  conditional E-value: 6.5e-11
                    HHHHHHHHHHHHHT-HHHHHHHEEEEEEEEEECTCEEEEEECHHHHHHHHHH..........H..-TT-EE-.EEEEEEEEETT.EEEEEEEEEET CS
  Lumazine_bd_2   7 eavledYfdglaegdaaklrkafhpdaalvgvtkgelremsleellalvaer..........espakegdprekeIesidvagd.vAmvkvelelp 91 
                    +av + Y  + ++ d+a++r++fhp + l  +t   ++  + ++++++v +r          + +++ +++ +++++sid+ag  v ++ ++  +p
     KOO22693.1 157 AAVWDGYCGAGRRCDEAAMRRVFHPLCNLTFATPDSVVLVDCDAFCERVGNRwelpehrpyaHLKDDPRASAADTLLSIDFAGPgVCHAILRIGYP 252
                    567778999999***********************999999999999998763333322222335667788899********************** PP

                    TEEEEEEEEEEEET...TEEEEEEE CS
  Lumazine_bd_2  92 denftDyLslvkid...geWkIvnk 113
                     + +tD+L l++     g+W Iv+k
     KOO22693.1 253 PFLYTDVLLLLEATggsGSWWIVAK 277
                    ***********98622268****99 PP

>> DUF4440  Domain of unknown function (DUF4440)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.4   0.0   8.7e-06     0.078       3      76 ..      11      90 ..       9     128 .. 0.72
   2 ?    2.2   0.0     0.026   2.3e+02      12      46 ..     167     204 ..     155     221 .. 0.77

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 8.7e-06
                HHHHHHHHHHHCT-HHHHHHCEEEEEEEE..-TTS-EE..EHHHHHHHHHCCHCEEEEEEEEE..EEEEEE.TTEEEEEEE CS
     DUF4440  3 aleealeeafvagdaealaallapdavlv..gpsgtvl..dkeellealeagfaagrslelte..eevrvl.gdlAvvtgr 76
                 + +++++a+ +++ ++++++++p  +l   gpsgtv   + ee+l+  ++ +a+ ++l+ ++  ++ +++ g +A + ++
  KOO22693.1 11 DVLKTYFAALHESSEAKFHQMWHPRGILLgiGPSGTVVarGSEEFLAGVTK-RAPSTELAAHDriLSLEMIdGTCASAKVQ 90
                57899*********************99877999***5448999**99986.45555555544345555554445555444 PP

  == domain 2  score: 2.2 bits;  conditional E-value: 0.026
                 HHCT-HHHHHHCEEEEEEEE..-TTS-EE.EHHHHHHH CS
     DUF4440  12 fvagdaealaallapdavlv..gpsgtvl.dkeellea 46 
                  +++d +a+ ++++p + l+  +p+  vl d +++ e+
  KOO22693.1 167 GRRCDEAAMRRVFHPLCNLTfaTPDSVVLvDCDAFCER 204
                 479************77555448888776688888776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (294 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       232  (0.0129399); expected 358.6 (0.02)
Passed bias filter:                      225  (0.0125495); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.39u 0.22s 00:00:00.61 Elapsed: 00:00:00.37
# Mc/sec: 2379.36
//
Query:       KOO22694.1  [L=787]
Description: cs domain-containing protein, partial [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.8e-20   73.4   0.0    6.6e-12   45.4   0.1    2.5  2  Pkinase      Protein kinase domain
    1.4e-08   34.3   0.2      3e-08   33.3   0.2    1.5  1  Pkinase_Tyr  Protein tyrosine kinase
     0.0007   20.6   0.0     0.0013   19.7   0.0    1.5  1  CS           CS domain
     0.0023   17.9  23.4     0.0023   17.9  23.4    4.3  4  Trypan_PARP  Procyclic acidic repetitive protein (PARP)


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.4   0.1   1.5e-15   6.6e-12       2      84 ..     341     423 ..     340     439 .. 0.88
   2 !   25.5   0.0   1.7e-09   7.6e-06     153     259 ..     444     566 ..     436     571 .. 0.78

  Alignments for each domain:
  == domain 1  score: 45.4 bits;  conditional E-value: 1.5e-15
                 EEEEEEEEESSEEEEEEEETTTTEEEEEEEEECHCHCHHHHHHHHHHHHHHHHHSCTTB--EEEEEEE.SSEEEEEEE--TTEB CS
     Pkinase   2 ekleklGeGsfGkVykaveketgkivAvKkikkekakkkkekkvlrEikilkklkhpnivrlyevfee.kdelylvleyvegge 84 
                 + + ++G+G+f++V+ka++++ g +vAvK ++  k+++++ k++ +Ei+ilk+l+hp iv+l e +e  +  l+lv e +++ge
  KOO22694.1 341 KHMGTVGRGAFSVVFKAKDSKVGGEVAVKAVQMPKDEQTR-KALKKEIEILKQLDHPGIVKLHENVECmDGVLHLVPETAPEGE 423
                 56789*****************************999877.69*********************99984556679999888775 PP

  == domain 2  score: 25.5 bits;  conditional E-value: 1.7e-09
                 SBCTTTSCGGGS-HHHH............TT...SCB.SHHHHHHHHHHHHHHHHHSS-STTTSSHHHHHHHHHHTHHHHHHHCT.SHH...HHHTTS- CS
     Pkinase 153 kltsfvgtseYlAPEvl............ke...ney.skkvDvWslGvilyelltgkppfsgekgkekvekeldqlekilkilg.etkeklpeaseis 234
                 + ++  gt  Y+APE+l            +     +   ++ D++slG ily lltg +p sg +  ek e+  + l + +   + + ++ ++ ++++s
  KOO22694.1 444 QESTLGGTAGYMAPEMLavdlalrrgtaiSPemiAGLsAPALDIFSLGRILYFLLTGVHPSSGFQF-EKLESFSRSLARPFSAKKgTGTKRFQMRKNLS 541
                 4677889**********9999998655552233344446789*******************95554.446666666777777766688999******** PP

                 HHHHHHHHHHT-SSGCCSTTHHHHH CS
     Pkinase 235 eeakdllkkllkkdpkkRltaeell 259
                   a+ l+  l ++  ++R+ a++  
  KOO22694.1 542 TGAQALIVALTAEVASERPAAASPA 566
                 *******************987655 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.3   0.2   6.7e-12     3e-08       5      86 ..     344     422 ..     340     425 .. 0.88

  Alignments for each domain:
  == domain 1  score: 33.3 bits;  conditional E-value: 6.7e-12
                  EEEEEESSEEEEEEEEETTTTSSEEEEEEEEESTTSSHHHHHHHHHHHHHHHTS-BTTB--EEEEEE.SSSSEEEEEE--TTE CS
  Pkinase_Tyr   5 kklGeGafGkVvegtlkgekekkevkVavKtlkeeateeekeelleeakimkklkhpnivkllgvct.keepllivteyvkgG 86 
                   ++G+Gaf+ V++++ +    k   +VavK ++  ++e+++++l +e++i+k+l+hp ivkl+  +   ++ l +v e +++G
   KOO22694.1 344 GTVGRGAFSVVFKAKDS----KVGGEVAVKAVQMPKDEQTRKALKKEIEILKQLDHPGIVKLHENVEcMDGVLHLVPETAPEG 422
                  579**********9988....8999*************************************998875666778887777766 PP

>> CS  CS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.7   0.0     3e-07    0.0013       3      76 .]     113     205 ..     111     205 .. 0.91

  Alignments for each domain:
  == domain 1  score: 19.7 bits;  conditional E-value: 3e-07
                 CEEEEETTEEEEEEE-TTCTTTTTCEEEEEETTEEEEEETSCEEEEECE......................BSS-BETTTEEEEEE.TTEEEEEEEB CS
          CS   3 ydWyQtldeVvvtiyvkkvnikkkdvkvefkerslkvkigkeklliege......................LfgpIdpeesswtie.skkveitLkK 76 
                 ++W+Q+++ V++++ ++  +i++    ++  +++l+++    ++  +g                       L g I pe+ssw++    ++ it+ K
  KOO22694.1 113 FQWAQRPEFVYLNVKFSS-RIDGPVTCLNVDNERLEFGN---EPAGNGTagtlffegtgrqkpklfrlnltLHGAILPENSSWSFAsVGRMSITIAK 205
                 79****************.9******************8...5655666777777777****************************77999999998 PP

>> Trypan_PARP  Procyclic acidic repetitive protein (PARP)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.8   9.6     0.012        52      41     120 ..     218     296 ..     189     302 .. 0.65
   2 !   11.2   2.6   6.1e-05      0.28      73     102 ..     416     445 ..     404     462 .. 0.55
   3 !   17.9  23.4   5.2e-07    0.0023      63     118 ..     617     672 ..     601     683 .. 0.74
   4 ?   -1.0   5.4      0.35   1.6e+03      67     101 ..     716     751 ..     706     776 .. 0.47

  Alignments for each domain:
  == domain 1  score: 3.8 bits;  conditional E-value: 0.012
  Trypan_PARP  41 kgkekgtkvsdddtngtdpepepepepepepepepepepetepeeepepepepepepepepepepepepepgaatlksva 120
                  k k k  +v +d    +d+e ++e+e   + e e++ ++ ++p +     + p   p p pe  +ep     aa+  s a
   KOO22694.1 218 KVKPKNMHVWHDRQHVADAEVKKEKEDR-KKEREAGAKEAPKPPPPLASPTPPSNAPPPSPEAPSEPADGAKAAAAASDA 296
                  5566788888888888888888888766.667777777755555444444445555555565555555555556555555 PP

  == domain 2  score: 11.2 bits;  conditional E-value: 6.1e-05
  Trypan_PARP  73 pepepepetepeeepepepepepepepepe 102
                  pe+ pe e+ pe  pe e  pe  pe e e
   KOO22694.1 416 PETAPEGEQVPETAPEGEQVPETAPEGEQE 445
                  333333333333333333333332222222 PP

  == domain 3  score: 17.9 bits;  conditional E-value: 5.2e-07
  Trypan_PARP  63 pepepepepepepepepetepeeepepepepepepepepepepepepepgaatlks 118
                  p + pepep  ep pe  +e   ep  ep pep p p+p pe+ pe  p +a+l+s
   KOO22694.1 617 PPDAPEPEPATEPVPELAPETALEPATEPVPEPAPAPDPMPETVPETAPETAALRS 672
                  335566666666666666666667788888888899999999999999*9999998 PP

  == domain 4  score: -1.0 bits;  conditional E-value: 0.35
  Trypan_PARP  67 pepepepepepep.etepeeep.epepepepepepep 101
                  p+p+p p   pe   +  e+ p ++e  p+   ep+ 
   KOO22694.1 716 PDPKPPPS-SPEGpSAATESAPvDEEHSPDVADEPKA 751
                  23333222.2222111222221122222222222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (787 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       758  (0.0422779); expected 358.6 (0.02)
Passed bias filter:                      465  (0.0259356); expected 358.6 (0.02)
Passed Vit filter:                        54  (0.00301188); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.71u 0.31s 00:00:01.02 Elapsed: 00:00:00.44
# Mc/sec: 5362.52
//
Query:       KOO22695.1  [L=258]
Description: hypothetical protein Ctob_007195 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
  ------ inclusion threshold ------
      0.024   14.8   0.0      0.043   14.0   0.0    1.4  1  Thioredoxin_7  Thioredoxin-like
      0.078   13.0   0.0       0.14   12.2   0.0    1.5  1  Thioredoxin    Thioredoxin


Domain annotation for each model (and alignments):
>> Thioredoxin_7  Thioredoxin-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.0   4.8e-06     0.043      17      81 ..     142     215 ..     132     217 .. 0.78

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 4.8e-06
                    T--EEEEE--TT-HHHHHHHHHHHH-HHH.HH.HHHT-EEEEESS--S-GGG....-TT-....--.SSEEEEE CS
  Thioredoxin_7  17 gkpvlvffgaswcftCqalerdflsdeev.kaalaekfvllrvdvterdani...lelde....qg.vPvvafl 81 
                     k v v+f+ s+ + C+ l+ +fl  +e     +a+ ++++rv+v+ r++       +de    ++ vP++afl
     KOO22695.1 142 SKLVVVMFSTSTDVGCRILNPMFLRLPEAnGGEFADGIAFVRVEVDGRQDDGlalQVFDEigivHQpVPTFAFL 215
                    567889*****************9975441445************7777644476566677666447*****98 PP

>> Thioredoxin  Thioredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   1.5e-05      0.14       7      70 ..     130     198 ..     125     240 .. 0.75

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 1.5e-05
                  HHHHHHHHTT.TSSEEEEEEE-TTSHHHHCHHHHHHHHHHHCTT....TSEEEEEETTTSHHHHHHTT- CS
  Thioredoxin   7 kenFeeevak.ekklvlveFyApwCghCkalaPeleklaeelkd....kvklakvdvdenedlakkyev 70 
                   +++++++ +  +klv+v F  +    C+ l+P++ +l e+  +     + +++v+vd  +d    ++v
   KOO22695.1 130 VTEWKDALIAaGSKLVVVMFSTSTDVGCRILNPMFLRLPEANGGefadGIAFVRVEVDGRQDDGLALQV 198
                  5677766555489**********************99877544444449********998886655554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (258 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       392  (0.021864); expected 358.6 (0.02)
Passed bias filter:                      369  (0.0205812); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.45u 0.24s 00:00:00.69 Elapsed: 00:00:00.41
# Mc/sec: 1876.14
//
Query:       KOO22696.1  [L=366]
Description: hypothetical protein Ctob_001481 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (366 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       341  (0.0190195); expected 358.6 (0.02)
Passed bias filter:                      301  (0.0167884); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.44u 0.22s 00:00:00.66 Elapsed: 00:00:00.39
# Mc/sec: 2839.97
//
Query:       KOO22697.1  [L=99]
Description: hypothetical protein Ctob_001480 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (99 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       224  (0.0124937); expected 358.6 (0.02)
Passed bias filter:                       80  (0.00446204); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.40u 0.27s 00:00:00.67 Elapsed: 00:00:00.43
# Mc/sec: 698.57
//
Query:       KOO22698.1  [L=424]
Description: hypothetical protein Ctob_001483 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    7.4e-09   36.0   5.6    1.4e-08   35.1   5.6    1.4  1  GPS       GPCR proteolysis site, GPS, motif
  ------ inclusion threshold ------
       0.22   11.1   0.6       0.56    9.8   0.6    1.6  1  HTH_47    winged helix-turn-helix
        7.1    6.2  10.1        8.6    5.9   2.4    2.5  3  Gp_dh_C   Glyceraldehyde 3-phosphate dehydrogenase, C-termina


Domain annotation for each model (and alignments):
>> GPS  GPCR proteolysis site, GPS, motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.1   5.6   2.3e-12   1.4e-08       2      42 ..     279     315 ..     278     315 .. 0.91

  Alignments for each domain:
  == domain 1  score: 35.1 bits;  conditional E-value: 2.3e-12
         GPS   2 sCvfWdeeneetgsWsteGCeltesdnknetvCsCnHLtsF 42 
                  C +Wd   e ++ Wst+GC++t + ++ ++ CsC+HLt F
  KOO22698.1 279 ECRYWD---EIESIWSTDGCTTTLG-TDGSVGCSCDHLTEF 315
                 6****5...7899********8888.9999*********99 PP

>> HTH_47  winged helix-turn-helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   0.6   9.4e-05      0.56      31      69 ..      66     104 ..      55     113 .. 0.82

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 9.4e-05
                 --HHHHHHHHHH-EEEEEHHHHHHHHT--HHHHHHHHHH CS
      HTH_47  31 qaemallwvLnlaDGkrsLldiAeriglpfdrvaaiara 69 
                 +   +l+++++ +DG++s    A  ig+ +d++a +a  
  KOO22698.1  66 SGLSSLFDLMSASDGSNSSASAAASIGAAVDQMARAATV 104
                 456789***************************998864 PP

>> Gp_dh_C  Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.9   2.4    0.0014       8.6      43     105 ..      28      90 ..      22     129 .. 0.80
   2 ?   -0.6   0.1      0.15   8.8e+02      33      73 ..      96     137 ..      91     140 .. 0.67
   3 ?    4.2   1.0    0.0049        29      39      90 ..     137     189 ..     132     192 .. 0.83

  Alignments for each domain:
  == domain 1  score: 5.9 bits;  conditional E-value: 0.0014
                 TSBTTCSSEEEE-THHHHHHHHSGGGTTTEEEEEEEESSSSEEEEEEEEEESSTS-HHHHHHH CS
     Gp_dh_C  43 araaaeniiptstgaakavglVlpelkgkldglAvrVPtpnvsvvdlvvelekevtveevnaa 105
                 + +aae++  ++t aa+ +++Vl  +     g A+ V     s+ dl+   + + + +   a 
  KOO22698.1  28 GDVAAEQMAQATTAAATELASVLATVPSLNAGAAQAVTSGLSSLFDLMSASDGSNSSASAAAS 90 
                 56899*******************9999999*****************987766554444443 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 0.15
                 SS--.SSTTTTSBTTCSS.EEEE-THHHHHHHHSGGGTTTEE CS
     Gp_dh_C  33 Dgpskkdlrraraaaeni.iptstgaakavglVlpelkgkld 73 
                 D++++     a aaa++i    stg a  v l  p+l+  ++
  KOO22698.1  96 DQMARAATVAALAAASSIsLNGSTGVADPVVLSSPNLNMSIN 137
                 555555555566666555256689999999888888887765 PP

  == domain 3  score: 4.2 bits;  conditional E-value: 0.0049
                 STTTTSBTTCSSEEEE-THH.HHHHHHSGGGTTTEEEEEEEESSSSEEEEEEE CS
     Gp_dh_C  39 dlrraraaaeniiptstgaa.kavglVlpelkgkldglAvrVPtpnvsvvdlv 90 
                 ++r+a a +  +i++++g + +a   V  +l g + g    VP+  v  ++lv
  KOO22698.1 137 NVRSASALSAAPIAVDSGTGiPAAVAVPSDLMGSIPGFNASVPVAAVLHTSLV 189
                 578888888999999999985667778889**************999888776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (424 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       895  (0.0499191); expected 358.6 (0.02)
Passed bias filter:                      414  (0.0230911); expected 358.6 (0.02)
Passed Vit filter:                        52  (0.00290033); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.50u 0.25s 00:00:00.75 Elapsed: 00:00:00.41
# Mc/sec: 3123.51
//
Query:       KOO22699.1  [L=461]
Description: snf2 super family [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.6e-07   30.4  11.3    2.6e-07   30.4  11.3    2.0  2  zf-C3HC4_3    Zinc finger, C3HC4 type (RING finger)
    1.9e-05   24.9  16.5    4.3e-05   23.8  14.4    2.2  2  zf-RING_2     Ring finger domain
    0.00017   21.5  11.9    0.00017   21.5  11.9    2.2  2  zf-RING_5     zinc-RING finger domain
    0.00023   20.9  11.8    0.00023   20.9  11.8    1.8  2  zf-C3HC4      Zinc finger, C3HC4 type (RING finger)
    0.00091   19.0  13.4    0.00091   19.0  13.4    1.9  2  zf-C3HC4_2    Zinc finger, C3HC4 type (RING finger)
      0.001   19.0  12.0      0.001   19.0  12.0    2.1  2  zf-RING_UBOX  RING-type zinc-finger
     0.0034   17.4   2.0     0.0079   16.2   2.0    1.6  1  PA            PA domain
     0.0093   16.3   0.0      0.019   15.3   0.0    1.5  1  Helicase_C    Helicase conserved C-terminal domain
  ------ inclusion threshold ------
      0.016   15.1  12.6      0.074   12.9  12.8    2.0  2  Prok-RING_4   Prokaryotic RING finger family 4
       0.11   12.5   2.6       0.26   11.3   2.6    1.6  1  DUF1192       Protein of unknown function (DUF1192)
        1.2    9.0  11.9        3.4    7.6  11.9    1.8  1  zf-C3HC4_5    Zinc finger, C3HC4 type (RING finger)
        5.3    7.1  12.1       0.97    9.5   0.1    2.4  2  DUF1644       Protein of unknown function (DUF1644)


Domain annotation for each model (and alignments):
>> zf-C3HC4_3  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.4  11.3   1.7e-10   2.6e-07       3      49 ..     224     272 ..     222     273 .. 0.92
   2 ?   -0.7   0.2      0.89   1.3e+03      38      45 ..     359     366 ..     346     374 .. 0.58

  Alignments for each domain:
  == domain 1  score: 30.4 bits;  conditional E-value: 1.7e-10
                 SB-TTTSSSBS-EEETT.EEEEEE-HHHHHHHHH..TT-B-TTT--B--E CS
  zf-C3HC4_3   3 eeCviClerprnvvllp.CgHlvlCeeCaekllk..rkkkCpiCrrpiek 49 
                   C+iCl+rp+ v++lp C H+ lC +C+++  +   + +Cp+Cr ++e+
  KOO22699.1 224 VVCPICLDRPEAVCVLPeCFHC-LCRSCLQRAVAggTSFRCPLCRINVES 272
                 57**********9999879999.*********99***********99875 PP

  == domain 2  score: -0.7 bits;  conditional E-value: 0.89
                 -B-TTT-- CS
  zf-C3HC4_3  38 kkCpiCrr 45 
                  +C+ C +
  KOO22699.1 359 GHCMRCLQ 366
                 44444433 PP

>> zf-RING_2  Ring finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.8  14.4   2.9e-08   4.3e-05       3      44 .]     226     267 ..     225     267 .. 0.84
   2 ?    0.3   0.0      0.59   8.8e+02       2      15 ..     360     373 ..     359     384 .. 0.75

  Alignments for each domain:
  == domain 1  score: 23.8 bits;  conditional E-value: 2.9e-08
   zf-RING_2   3 CpICleelssadsvlll.pCgHvfhreClerwlrssst..CPlCr 44 
                 CpICl   ++++ v++l +C H+ +r+Cl+r ++   +  CPlCr
  KOO22699.1 226 CPICL---DRPEAVCVLpECFHCLCRSCLQRAVAGGTSfrCPLCR 267
                 ****9...66677777745************987777789****9 PP

  == domain 2  score: 0.3 bits;  conditional E-value: 0.59
   zf-RING_2   2 eCpICleelssads 15 
                  C+ Cl+++ ++ +
  KOO22699.1 360 HCMRCLQAFGRHGQ 373
                 59999999976554 PP

>> zf-RING_5  zinc-RING finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.5  11.9   1.1e-07   0.00017       2      43 ..     226     267 ..     225     268 .. 0.97
   2 ?   -0.3   0.1      0.71   1.1e+03       1      10 [.     360     371 ..     360     384 .. 0.65

  Alignments for each domain:
  == domain 1  score: 21.5 bits;  conditional E-value: 1.1e-07
   zf-RING_5   2 CnkCfeklskeekfyltsCgHifCekClkkll..ekeavCpiCr 43 
                 C++C ++   e  ++l +C H +C +Cl+++   + +++Cp+Cr
  KOO22699.1 226 CPICLDRP--EAVCVLPECFHCLCRSCLQRAVagGTSFRCPLCR 267
                 ********..*********************************8 PP

  == domain 2  score: -0.3 bits;  conditional E-value: 0.71
   zf-RING_5   1 hCnkCfekl..s 10 
                 hC +C + +  +
  KOO22699.1 360 HCMRCLQAFgrH 371
                 899999888543 PP

>> zf-C3HC4  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.9  11.8   1.6e-07   0.00023       1      41 []     226     266 ..     226     266 .. 0.98
   2 ?   -2.7   0.3       3.8   5.6e+03      25      41 .]     348     364 ..     347     367 .. 0.59

  Alignments for each domain:
  == domain 1  score: 20.9 bits;  conditional E-value: 1.6e-07
                 -TTT-S--SS-E.E-TTS--B-CHHHHHHHHCTSSB--TTT CS
    zf-C3HC4   1 CpiCleeakepnelleCkHsfCskCirkilksrkkvkCPlC 41 
                 CpiCl+ ++  + l eC H +C++C+++ +   +++ CPlC
  KOO22699.1 226 CPICLDRPEAVCVLPECFHCLCRSCLQRAVAGGTSFRCPLC 266
                 ************9******************999999**** PP

  == domain 2  score: -2.7 bits;  conditional E-value: 3.8
                 HHHHHHHCTSSB--TTT CS
    zf-C3HC4  25 CirkilksrkkvkCPlC 41 
                 C+  ++ s +   C+ C
  KOO22699.1 348 CMPALRMSGNLGHCMRC 364
                 66666664444447777 PP

>> zf-C3HC4_2  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.0  13.4   6.1e-07   0.00091       2      40 .]     226     266 ..     225     266 .. 0.91
   2 ?   -2.4   0.1         3   4.5e+03      22      28 ..     360     366 ..     357     372 .. 0.77

  Alignments for each domain:
  == domain 1  score: 19.0 bits;  conditional E-value: 6.1e-07
  zf-C3HC4_2   2 CpiCldmlkdpsvvtpCgHvfCqkCilrsLeekn..eCPlC 40 
                 CpiCld+ +   v+ +C H  C++C++r+   +   +CPlC
  KOO22699.1 226 CPICLDRPEAVCVLPECFHCLCRSCLQRAVAGGTsfRCPLC 266
                 *********998899*************88776668***** PP

  == domain 2  score: -2.4 bits;  conditional E-value: 3
  zf-C3HC4_2  22 fCqkCil 28 
                 +C  C++
  KOO22699.1 360 HCMRCLQ 366
                 7888886 PP

>> zf-RING_UBOX  RING-type zinc-finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.0  12.0     7e-07     0.001       1      39 []     226     264 ..     226     264 .. 0.84
   2 ?   -1.7   0.0       2.1   3.2e+03      21      30 ..     361     370 ..     361     378 .. 0.61

  Alignments for each domain:
  == domain 1  score: 19.0 bits;  conditional E-value: 7e-07
  zf-RING_UBOX   1 CpIClelftdPlvl.pCGHtFCreClwelskslegafkCP 39 
                   CpICl+  +   vl +C H++Cr+Cl +    ++++f+CP
    KOO22699.1 226 CPICLDRPEAVCVLpECFHCLCRSCL-QRAVAGGTSFRCP 264
                   *****95554434548**********.89**********9 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 2.1
  zf-RING_UBOX  21 CreClwelsk 30 
                   C +Cl+ + +
    KOO22699.1 361 CMRCLQAFGR 370
                   8899953333 PP

>> PA  PA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   2.0   5.3e-06    0.0079      14      88 ..      19      92 ..       5      93 .. 0.74

  Alignments for each domain:
  == domain 1  score: 16.2 bits;  conditional E-value: 5.3e-06
          PA 14 gisadfegvdvkGkivLvqr.....tfaeKarnAqaaGAagviivndgelgaatgasgnegepdgitiPavgvsredgea 88
                g++a+   + v G i L+++     +f + a+ A+a G+++++++ dge  + +++ g ++e+    iPa+++  ++++ 
  KOO22699.1 19 GAAAA---EAVPGAIYLISEaeaagDFCDAAWRAAAIGGIALLVACDGE-VTRPMTRGRDNEA--PPIPAAMLPASEAAP 92
                44444...499*******7678899********************6554.2333344444444..99*****99888765 PP

>> Helicase_C  Helicase conserved C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.0   1.3e-05     0.019       2     109 ..     307     431 ..     306     433 .. 0.80

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 1.3e-05
                 HHHHHHHHH...HHTTTTSEEEEEESSHHHHHHHHHHHHHTTSTEEEESTTSTHHHHHHHHHHHH.TTSSS.EEEESGGGTSSSTSTTESEEEESSSSS CS
  Helicase_C   2 kleallell...kleeeggkilifvntidrlekvklllekkgikvavlhgelpqnereeileqfn.kgesd.vLiatdvaerGidipkvnlVinfdlpr 95 
                 kl++ll+l+    le+ ++++li+++   ++e++  ll    + ++++ g+l +    + l++f  +g+ + ++++++  + Gi+++ +++++ +++  
  KOO22699.1 307 KLQRLLQLVhtvLLEAPDERVLIYTQWLAHVEHLGTLLDAACMPALRMSGNLGHCM--RCLQAFGrHGQPRvLILSSQHHSSGINLQAARNLVLVHPYC 403
                 556666665566799****************9888888888999999999777655..68999954788885669999*************99999885 PP

                 SH..............HHHHHHHTTSSS CS
  Helicase_C  96 nv..............tsyiqriGRtgR 109
                 ++              +  +q+iGR+ R
  KOO22699.1 404 TPsatapefvsfkqlcAFEQQAIGRIRR 431
                 5555667777888887999999999988 PP

>> Prok-RING_4  Prokaryotic RING finger family 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.9   0.1      0.14     2e+02      32      38 ..     225     231 ..     217     235 .. 0.70
   2 ?   12.9  12.8   4.9e-05     0.074       1      40 [.     226     270 ..     226     274 .. 0.78

  Alignments for each domain:
  == domain 1  score: 1.9 bits;  conditional E-value: 0.14
  Prok-RING_4  32 sCPlCqr 38 
                   CP+C  
   KOO22699.1 225 VCPICLD 231
                  6999965 PP

  == domain 2  score: 12.9 bits;  conditional E-value: 4.9e-05
  Prok-RING_4   1 CvlCgeqekkailep.CgHlvCkeCfdsk...dls.sCPlCqrri 40 
                  C +C  +++ + + p C H +C++C++ +     s +CPlC+ ++
   KOO22699.1 226 CPICLDRPEAVCVLPeCFHCLCRSCLQRAvagGTSfRCPLCRINV 270
                  8999999666655555***********995553337*****9776 PP

>> DUF1192  Protein of unknown function (DUF1192)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   2.6   0.00018      0.26      17      54 ..     156     193 ..     154     195 .. 0.81

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00018
     DUF1192  17 LslLSveELeerIalLeaEIaRleaaiakkkasraAAe 54 
                 L++ S +  ++rI +LeaE  Rle+a+   ++++ AA 
  KOO22699.1 156 LDDASEQSVTQRIVQLEAEESRLEKALHFSSQQQRAAA 193
                 7778888899*****************97665555554 PP

>> zf-C3HC4_5  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.6  11.9    0.0023       3.4       4      47 ..     226     265 ..     224     269 .. 0.79

  Alignments for each domain:
  == domain 1  score: 7.6 bits;  conditional E-value: 0.0023
  zf-C3HC4_5   4 CPvCkssrYlnpdleflinpeCYhkmCesCvdRlFsdGPn.qCPv 47 
                 CP+C     l++   + + peC+h +C+sC +R    G   +CP 
  KOO22699.1 226 CPIC-----LDRPEAVCVLPECFHCLCRSCLQRAVAGGTSfRCPL 265
                 7777.....5555667788**************999997547886 PP

>> DUF1644  Protein of unknown function (DUF1644)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   7.4       0.8   1.2e+03       3      29 ..     224     249 ..     222     254 .. 0.74
   2 ?    9.5   0.1   0.00065      0.97      85     102 ..     259     276 ..     252     290 .. 0.78

  Alignments for each domain:
  == domain 1  score: -0.6 bits;  conditional E-value: 0.8
     DUF1644   3 vsCpiClehPhnavlllCsshekGCrs 29 
                 v CpiCl+ P  av +l   ++  Crs
  KOO22699.1 224 VVCPICLDRPE-AVCVLPECFHCLCRS 249
                 89********5.666666666666666 PP

  == domain 2  score: 9.5 bits;  conditional E-value: 0.00065
     DUF1644  85 aelkCPlCrGevkgwkvv 102
                 ++  CPlCr +v+ w+v 
  KOO22699.1 259 TSFRCPLCRINVESWQVS 276
                 5789***********973 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (461 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       703  (0.0392102); expected 358.6 (0.02)
Passed bias filter:                      421  (0.0234815); expected 358.6 (0.02)
Passed Vit filter:                        49  (0.002733); expected 17.9 (0.001)
Passed Fwd filter:                        13  (0.000725082); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.48u 0.24s 00:00:00.72 Elapsed: 00:00:00.38
# Mc/sec: 3645.16
//
Query:       KOO22700.1  [L=123]
Description: hypothetical protein Ctob_001472 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (123 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       323  (0.0180155); expected 358.6 (0.02)
Passed bias filter:                      206  (0.0114898); expected 358.6 (0.02)
Passed Vit filter:                        12  (0.000669307); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.23s 00:00:00.57 Elapsed: 00:00:00.37
# Mc/sec: 987.16
//
Query:       KOO22701.1  [L=298]
Description: thump domain-containing protein 1 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.3e-10   40.7   0.0    3.1e-10   40.3   0.0    1.2  1  THUMP     THUMP domain


Domain annotation for each model (and alignments):
>> THUMP  THUMP domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.3   0.0   1.7e-14   3.1e-10      37     142 ..     156     262 ..     137     264 .. 0.77

  Alignments for each domain:
  == domain 1  score: 40.3 bits;  conditional E-value: 1.7e-14
                 HHHHHHHHHTSTTECEEEEE.EEEEESSHHHHHHHHHHHHHHHHHHCT-...EEEEEEEESSSTSSSHHHHHHHHHHHHHHCCTT.-EE-SSS-SEEEE CS
       THUMP  37 eellkealekargiqrvipv.cevceadledileaakeivkkkfeeeke...tFaVrvkrrgkhfeftsreinrevGkaivektg.lkVdlenPdivvr 130
                 e++l + +  ar i+r++pv + v +++++ + +a+k + +  +        t+aV+ +rr+++ + +++ i ++v+k +  +   ++Vdl nP+  v 
  KOO22701.1 156 EQALASGTAGARHIVRMMPVqLCVSAHKVDAFADAVKPLAHAALN---GfggTYAVQWRRRNNT-TLDKMSIIDTVAKQVGAAVPqATVDLRNPEAAVC 250
                 4445555555669*******5444555555555555555555554...4445************.********************************** PP

                 EEEETTEEEEEE CS
       THUMP 131 veiikdkayisi 142
                 ve+i  + ++s+
  KOO22701.1 251 VEVIAATGLVSV 262
                 ***988777776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (298 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       417  (0.0232584); expected 358.6 (0.02)
Passed bias filter:                      298  (0.0166211); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.25s 00:00:00.68 Elapsed: 00:00:00.40
# Mc/sec: 2210.52
//
Query:       KOO22702.1  [L=208]
Description: low molecular mass early light-inducible protein hv60 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.4e-08   35.5   0.5    2.3e-08   34.7   0.4    1.4  1  Chloroa_b-bind  Chlorophyll A-B binding protein
  ------ inclusion threshold ------
       0.12   12.6   0.2       0.25   11.5   0.0    1.6  2  LigA            Aromatic-ring-opening dioxygenase LigAB, LigA


Domain annotation for each model (and alignments):
>> Chloroa_b-bind  Chlorophyll A-B binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.7   0.4   2.6e-12   2.3e-08      30     158 ..      55     184 ..      33     187 .. 0.64

  Alignments for each domain:
  == domain 1  score: 34.7 bits;  conditional E-value: 2.6e-12
                     HHHHHHHHHHHHHHHHHHHHHHHHHHH...HTSSSCCCT--.TTTTTTS....SS-HHHHHH.HHHHHHHHHHHHHHHHHHSTTCSS......-S CS
  Chloroa_b-bind  30 lreaEliHGRvAMlavlGalvpelltk...lsaassfaegpawaeagkv....alsvptllalqillligflelareqelkapeseg......ee 111
                       +aE  +GR AM +++ ++++ +++    +++ +  ++  +w     +    ++ + t  a+++++ + +l +   + +  p+  g      + 
      KOO22702.1  55 TVKAERWNGRHAMFGWVMIVATGYAKShglIPSGDVALQYKDWGG--LAqlglNQYISTERAVIMMVHVHALAVSAAAAF-GPQVLGdtltllDG 146
                     5689*****************998766555333233233223553..224456333334334455555555555433333.33333344677766 PP

                     SSSSSSSHCHHSTTSTT.TSHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
  Chloroa_b-bind 112 ekrgypGglgfdplglakkdeeekaelkekEiknGRlAMiaflgfvv 158
                     e+++ p gl f pl+           +  +E+ nGRlAM++++++v+
      KOO22702.1 147 ETDEEPYGL-FVPLE--------SGLTPAAEMLNGRLAMLGLIAVVS 184
                     677777775.77774........456799*************99986 PP

>> LigA  Aromatic-ring-opening dioxygenase LigAB, LigA subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   2.8e-05      0.25      23      67 ..      77     121 ..      75     132 .. 0.81
   2 ?   -3.2   0.0       1.1   9.4e+03      41      58 ..     191     208 .]     186     208 .] 0.79

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 2.8e-05
                 HHHHHS---HHHHHHHHTT-HHHHHHHT--HHHHHHHHHHTT--H CS
        LigA  23 ayldeygLteeqkeavlardwlkllalGgniyyLaKlaavlglsm 67 
                  y++++gL +    a++ +dw +l +lG n y+    a ++ + +
  KOO22702.1  77 GYAKSHGLIPSGDVALQYKDWGGLAQLGLNQYISTERAVIMMVHV 121
                 6899999*************************9887776654443 PP

  == domain 2  score: -3.2 bits;  conditional E-value: 1.1
                 T-HHHHHHHT--HHHHHH CS
        LigA  41 rdwlkllalGgniyyLaK 58 
                  d+l++++ G+   +LaK
  KOO22702.1 191 MDILEVVNIGVGGLLLAK 208
                 588899999998888876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (208 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       400  (0.0223102); expected 358.6 (0.02)
Passed bias filter:                      264  (0.0147247); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.40u 0.22s 00:00:00.62 Elapsed: 00:00:00.38
# Mc/sec: 1645.46
//
Query:       KOO22703.1  [L=231]
Description: calcium-dependent protein kinase 17-like protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    9.6e-15   53.2   1.6     0.0021   17.8   0.2    4.4  4  EF-hand_6     EF-hand domain
    1.1e-14   52.7   2.6    8.6e-05   21.8   0.7    4.4  4  EF-hand_1     EF hand
    5.7e-14   52.3   0.4    3.7e-06   27.3   0.0    3.1  2  EF-hand_7     EF-hand domain pair
    4.1e-10   38.7   2.3     0.0011   18.3   0.6    3.4  3  EF-hand_5     EF hand
    1.3e-07   31.3   3.0      0.043   13.7   0.5    4.3  4  EF-hand_8     EF-hand domain pair
    5.2e-06   26.4   0.1     0.0016   18.3   0.0    2.6  2  EF-hand_4     Cytoskeletal-regulatory complex EF hand
    6.5e-05   23.2   0.1      0.023   15.0   0.0    2.8  2  EF-hand_9     EF-hand domain
  ------ inclusion threshold ------
      0.094   13.0   0.2        9.3    6.6   0.0    2.6  3  SPARC_Ca_bdg  Secreted protein acidic and rich in cysteine Ca


Domain annotation for each model (and alignments):
>> EF-hand_6  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.0   0.0   1.6e-05     0.036       1      27 [.      59      85 ..      59      91 .. 0.93
   2 !   17.8   0.2   9.4e-07    0.0021       8      27 ..     103     122 ..     101     128 .. 0.90
   3 !   15.2   0.0   6.6e-06     0.015       3      26 ..     134     157 ..     132     164 .. 0.89
   4 ?    1.7   0.0      0.14   3.2e+02      16      26 ..     185     195 ..     176     202 .. 0.74

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 1.6e-05
   EF-hand_6  1 elreaFklfDkdgdGkidaeElrkalr 27
                +lr +F+ +D++g G+i+++ l+ +l 
  KOO22703.1 59 KLRNIFEGLDTEGHGTITIARLKEVLE 85
                5899*******************9997 PP

  == domain 2  score: 17.8 bits;  conditional E-value: 9.4e-07
   EF-hand_6   8 lfDkdgdGkidaeElrkalr 27 
                  fD dgdG+id++E+++a+ 
  KOO22703.1 103 NFDIDGDGEIDWQEFVAAIM 122
                 69**************9986 PP

  == domain 3  score: 15.2 bits;  conditional E-value: 6.6e-06
   EF-hand_6   3 reaFklfDkdgdGkidaeElrkal 26 
                  ++F+++D+d +G+++  E+  +l
  KOO22703.1 134 AKVFRQLDVDSSGTLSLTEISTIL 157
                 689****************98887 PP

  == domain 4  score: 1.7 bits;  conditional E-value: 0.14
   EF-hand_6  16 kidaeElrkal 26 
                 + +++E+++++
  KOO22703.1 185 QMTFDEFKNLM 195
                 6899***9966 PP

>> EF-hand_1  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.4   0.0   0.00076       1.7       2      25 ..      60      83 ..      59      86 .. 0.83
   2 !   21.8   0.7   3.8e-08   8.6e-05       8      27 ..     103     122 ..     101     124 .. 0.90
   3 !   14.7   0.0   7.2e-06     0.016       3      26 ..     134     157 ..     132     159 .. 0.89
   4 ?    4.4   0.1     0.014        31      17      26 ..     186     195 ..     185     198 .. 0.85

  Alignments for each domain:
  == domain 1  score: 8.4 bits;  conditional E-value: 0.00076
                HHHHHHHHTTTSSSEEEHHHHHHH CS
   EF-hand_1  2 lkeiFrefDkDgdGkIdfeEfkel 25
                l++iF+ +D+ g G+I++  +ke+
  KOO22703.1 60 LRNIFEGLDTEGHGTITIARLKEV 83
                89***************8766655 PP

  == domain 2  score: 21.8 bits;  conditional E-value: 3.8e-08
                 HHTTTSSSEEEHHHHHHHHH CS
   EF-hand_1   8 efDkDgdGkIdfeEfkellk 27 
                  fD DgdG Id++Ef+++++
  KOO22703.1 103 NFDIDGDGEIDWQEFVAAIM 122
                 69**************9986 PP

  == domain 3  score: 14.7 bits;  conditional E-value: 7.2e-06
                 HHHHHHHTTTSSSEEEHHHHHHHH CS
   EF-hand_1   3 keiFrefDkDgdGkIdfeEfkell 26 
                  ++Fr +D+D +G++++ E  ++l
  KOO22703.1 134 AKVFRQLDVDSSGTLSLTEISTIL 157
                 689****************98776 PP

  == domain 4  score: 4.4 bits;  conditional E-value: 0.014
                 EEHHHHHHHH CS
   EF-hand_1  17 IdfeEfkell 26 
                 ++f+Efk+l+
  KOO22703.1 186 MTFDEFKNLM 195
                 79******99 PP

>> EF-hand_7  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.3   0.0   1.6e-09   3.7e-06       3      70 ..      59     121 ..      57     122 .. 0.83
   2 !   21.7   0.0   9.1e-08    0.0002       2      70 ..     131     195 ..     130     196 .. 0.90

  Alignments for each domain:
  == domain 1  score: 27.3 bits;  conditional E-value: 1.6e-09
   EF-hand_7   3 klkeaFkelDtdgdgyldkeellrllrkifqgagegsklsdee....lellfkefDtdkdGvisfdEFlkly 70 
                 kl+ +F+ lDt g+g ++ + l+++l+       e+ + + +     ++  + +fD d+dG+i+++EF++++
  KOO22703.1  59 KLRNIFEGLDTEGHGTITIARLKEVLE------AEAAE-TGQNpfggID--LSNFDIDGDGEIDWQEFVAAI 121
                 7999***********************......67767.4444454344..5699*************9985 PP

  == domain 2  score: 21.7 bits;  conditional E-value: 9.1e-08
   EF-hand_7   2 eklkeaFkelDtdgdgyldkeellrllrkifqgagegsklsdeelellfkefDtdkdG....visfdEFlkly 70 
                 e l  +F++lD+d +g l+ +e+   +       g +  +s++ le++ ++   ++dG    +++fdEF++l+
  KOO22703.1 131 ENLAKVFRQLDVDSSGTLSLTEIS-TIL------GNEHQFSRQVLEAVKRN-RGTGDGvetiQMTFDEFKNLM 195
                 778999****************99.666......999999**999999999.8888999999*******9998 PP

>> EF-hand_5  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.3   0.6   5.1e-07    0.0011       6      22 ..     102     118 ..      99     122 .. 0.85
   2 !   17.6   0.0   8.4e-07    0.0019       1      24 [.     133     156 ..     133     157 .. 0.89
   3 ?   -0.5   0.0      0.46     1e+03      17      25 .]     187     195 ..     187     195 .. 0.83

  Alignments for each domain:
  == domain 1  score: 18.3 bits;  conditional E-value: 5.1e-07
                 HHH-SS-SSCE-HHHHH CS
   EF-hand_5   6 qaiDlNgDGkIskeELk 22 
                 + +D +gDG I+ +E+ 
  KOO22703.1 102 SNFDIDGDGEIDWQEFV 118
                 679************95 PP

  == domain 2  score: 17.6 bits;  conditional E-value: 8.4e-07
                 HHHHHHHH-SS-SSCE-HHHHHHH CS
   EF-hand_5   1 lkdtFqaiDlNgDGkIskeELktl 24 
                 l ++F+++D++ +G++s  E  t+
  KOO22703.1 133 LAKVFRQLDVDSSGTLSLTEISTI 156
                 5689****************8875 PP

  == domain 3  score: -0.5 bits;  conditional E-value: 0.46
                 -HHHHHHHH CS
   EF-hand_5  17 skeELktlv 25 
                 +++E+k+l+
  KOO22703.1 187 TFDEFKNLM 195
                 579***987 PP

>> EF-hand_8  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.0   0.0    0.0094        21      24      44 ..      56      76 ..      38      85 .. 0.80
   2 !   13.7   0.5   1.9e-05     0.043      34      50 ..     103     119 ..     101     123 .. 0.90
   3 !    7.2   0.0    0.0019       4.3      24      48 ..     129     153 ..     119     157 .. 0.85
   4 ?    2.7   0.1      0.05   1.1e+02       4      16 ..     185     198 ..     182     208 .. 0.68

  Alignments for each domain:
  == domain 1  score: 5.0 bits;  conditional E-value: 0.0094
   EF-hand_8 24 seeevdilfrefDtdgdGkis 44
                  ++++ +f  +Dt+g G+i+
  KOO22703.1 56 ELHKLRNIFEGLDTEGHGTIT 76
                557899*************97 PP

  == domain 2  score: 13.7 bits;  conditional E-value: 1.9e-05
   EF-hand_8  34 efDtdgdGkisfeEFcv 50 
                  fD+dgdG i++ EF++
  KOO22703.1 103 NFDIDGDGEIDWQEFVA 119
                 69*************97 PP

  == domain 3  score: 7.2 bits;  conditional E-value: 0.0019
   EF-hand_8  24 seeevdilfrefDtdgdGkisfeEF 48 
                 +ee++  +fr +D d +G++s++E 
  KOO22703.1 129 NEENLAKVFRQLDVDSSGTLSLTEI 153
                 56668889***************96 PP

  == domain 4  score: 2.7 bits;  conditional E-value: 0.05
   EF-hand_8   4 kItreelrril.ri 16 
                 ++t++e++  + ++
  KOO22703.1 185 QMTFDEFKNLMlSK 198
                 57888888766555 PP

>> EF-hand_4  Cytoskeletal-regulatory complex EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.3   0.0   7.3e-07    0.0016       3      70 ..      51     122 ..      48     132 .. 0.78
   2 !    7.8   0.0    0.0014       3.2      31      66 ..     118     154 ..     118     172 .. 0.85

  Alignments for each domain:
  == domain 1  score: 18.3 bits;  conditional E-value: 7.3e-07
   EF-hand_4   3 kleeleikkyweifsglkpe.dnkltgdkvapvlknskleedk..lekiwdla..didedgkldfeefciamr 70 
                 +l ++e++k  +if+gl+ e + ++t  ++  vl+    e+ +  +  i dl+  did dg++d++ef+ a+ 
  KOO22703.1  51 NLTSSELHKLRNIFEGLDTEgHGTITIARLKEVLEAEAAETGQnpFGGI-DLSnfDIDGDGEIDWQEFVAAIM 122
                 577899***********9862679**********988777655114555.666559************98764 PP

  == domain 2  score: 7.8 bits;  conditional E-value: 0.0014
   EF-hand_4  31 vapvlknskle.edklekiwdladidedgkldfeefc 66 
                 va+++ + +l+ e++l+k++   d+d+ g+l + e  
  KOO22703.1 118 VAAIMDDHELHnEENLAKVFRQLDVDSSGTLSLTEIS 154
                 567888888862578****************999976 PP

>> EF-hand_9  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.0     1e-05     0.023       3      63 ..      63     122 ..      61     125 .. 0.77
   2 ?    5.3   0.0     0.011        25       3      28 ..     136     161 ..     134     198 .. 0.68

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 1e-05
   EF-hand_9   3 vFevcDtqktGrVpvsrlidyLravtaqdpees..eLeelakelDPdgedasvdldtflrvmr 63 
                 +Fe  Dt+  G+++++rl+++L+a +a++ ++    ++   +++D dg  +++d   f + ++
  KOO22703.1  63 IFEGLDTEGHGTITIARLKEVLEAEAAETGQNPfgGID--LSNFDIDGD-GEIDWQEFVAAIM 122
                 7999***********************87777665444..345666665.6688888877666 PP

  == domain 2  score: 5.3 bits;  conditional E-value: 0.011
   EF-hand_9   3 vFevcDtqktGrVpvsrlidyLravt 28 
                 vF+  D+++ G+  ++++ ++L    
  KOO22703.1 136 VFRQLDVDSSGTLSLTEISTILGNEH 161
                 79999**************9996554 PP

>> SPARC_Ca_bdg  Secreted protein acidic and rich in cysteine Ca binding region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6   0.0    0.0041       9.3      26     111 ..      30     118 ..      16     120 .. 0.78
   2 ?    3.7   0.0     0.032        72      55      79 ..     132     156 ..     122     174 .. 0.83
   3 ?   -2.3   0.0       2.5   5.5e+03      67      81 ..     192     206 ..     181     228 .. 0.58

  Alignments for each domain:
  == domain 1  score: 6.6 bits;  conditional E-value: 0.0041
  SPARC_Ca_bdg  26 elkereeekehleelekkeeeknlkeckepvawkFsklDtnsdkvlsksELaplraplvklehCikpf....lescDadkdkkislkEwc 111
                   ++k+ ++ +  +++ +++  ++ +++  ++++  F+ lDt+  ++++ + L+++ +     e+  +pf    l++ D d d++i+ +E++
    KOO22703.1  30 SVKRYAQAHRFQKAVRHSMATNLTSSELHKLRNIFEGLDTEGHGTITIARLKEVLE-AEAAETGQNPFggidLSNFDIDGDGEIDWQEFV 118
                   4444444443344444555566667777899999*****************99988.59999999*999988999*************97 PP

  == domain 2  score: 3.7 bits;  conditional E-value: 0.032
  SPARC_Ca_bdg  55 pvawkFsklDtnsdkvlsksELapl 79 
                   ++a  F +lD++s ++ls +E++ +
    KOO22703.1 132 NLAKVFRQLDVDSSGTLSLTEISTI 156
                   4556799***********9999987 PP

  == domain 3  score: -2.3 bits;  conditional E-value: 2.5
  SPARC_Ca_bdg  67 sdkvlsksELaplra 81 
                   ++ +lsk +L+++ +
    KOO22703.1 192 KNLMLSKGDLSSVSK 206
                   555555555555554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (231 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       745  (0.0415528); expected 358.6 (0.02)
Passed bias filter:                      481  (0.026828); expected 358.6 (0.02)
Passed Vit filter:                        55  (0.00306766); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.43u 0.26s 00:00:00.69 Elapsed: 00:00:00.42
# Mc/sec: 1665.34
//
Query:       KOO22704.1  [L=255]
Description: calcium-dependent protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.7e-58  198.1   0.0    2.1e-58  197.8   0.0    1.0  1  Pkinase         Protein kinase domain
    5.7e-30  104.5   0.0    6.8e-30  104.2   0.0    1.0  1  Pkinase_Tyr     Protein tyrosine kinase
    5.4e-11   41.9   0.0    7.3e-11   41.5   0.0    1.1  1  Pkinase_fungal  Fungal protein kinase
    2.9e-08   33.4   0.0    2.9e-07   30.1   0.0    2.1  2  Kinase-like     Kinase-like
    1.3e-06   28.6   0.0     0.0046   16.9   0.0    2.1  2  APH             Phosphotransferase enzyme family
  ------ inclusion threshold ------
      0.015   14.6   0.1       0.02   14.3   0.1    1.2  1  Kdo             Lipopolysaccharide kinase (Kdo/WaaP) family
      0.029   14.7   0.0      0.047   14.0   0.0    1.3  1  PqqD            Coenzyme PQQ synthesis protein D (PqqD)


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  197.8   0.0     8e-62   2.1e-58       6     212 ..      35     241 ..      31     253 .. 0.93

  Alignments for each domain:
  == domain 1  score: 197.8 bits;  conditional E-value: 8e-62
                 EEEEESSEEEEEEEETTTTEEEEEEEEECHCHCHHHHHHHHHHHHHHHHHS.CTTB--EEEEEEESSEEEEEEE--TTEBHHHHHHHHSS--HHHHHHH CS
     Pkinase   6 klGeGsfGkVykaveketgkivAvKkikkekakkkkekkvlrEikilkklk.hpnivrlyevfeekdelylvleyveggeladllerkgslseeeakki 103
                  +GeG+fG V  ++e +tgk  A+K ++   a+++++  +++E+++lk +  h+ni+++++v e+ ++ ylv++ + ggel+d++   ++ se++a   
  KOO22704.1  35 PIGEGGFGAVHLCTEVKTGKRRACKAMRLPTAQDRDD--FRHEVAVLKATGkHKNICHCIDVAEDARYGYLVMQSCTGGELFDRIA-ARNCSEKDAAMA 130
                 79*******************************9887..**********999*********************************7.5889******** PP

                 HHHHHHHHHHHHHTTEE-SS-SGGGEEEETTTE...EEE-SGTTSEESSSSCSBCTTTSCGGGS-HHHHTTSCBSHHHHHHHHHHHHHHHHHSS-STTT CS
     Pkinase 104 akqilegleylHskgiiHrDlKpeNiLidekge...lKitDFGlakelessskltsfvgtseYlAPEvlkeneyskkvDvWslGvilyelltgkppfsg 199
                 +  +l++l++lH k+iiHrD+KpeN+L+++k+    lK++DFGla +l+ +++ t+++gt  Y+APEvl + +ys ++D+WslGvi++ +l+gk pf+g
  KOO22704.1 131 IVDVLAALNHLHTKRIIHRDIKPENLLYKDKQPgspLKLIDFGLAIQLQPGQRETEVCGTTSYMAPEVL-RGSYSFECDIWSLGVICFFMLSGKLPFPG 228
                 *****************************444478**********************************.568*************************8 PP

                 SSHHHHHHHHHHT CS
     Pkinase 200 ekgkekvekeldq 212
                 ++++ek +++l+ 
  KOO22704.1 229 RSDEEKEARILRG 241
                 8888877777665 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  104.2   0.0   2.6e-33   6.8e-30       6     223 ..      35     243 ..      32     255 .] 0.89

  Alignments for each domain:
  == domain 1  score: 104.2 bits;  conditional E-value: 2.6e-33
                  EEEEESSEEEEEEEEETTTTSSEEEEEEEEESTTSSHHHHHHHHHHHHHHHTS.-BTTB--EEEEEESSSSEEEEEE--TTEBHHHHHHHTCTTTSBH CS
  Pkinase_Tyr   6 klGeGafGkVvegtlkgekekkevkVavKtlkeeateeekeelleeakimkkl.khpnivkllgvctkeepllivteyvkgGdLlkfLrkkekekltl 102
                   +GeG fG V+ +t      k+  + a K ++  + ++ ++++ +e++++k++ kh+ni +++ v  +++  ++v++ ++gG+L + + ++   +++ 
   KOO22704.1  35 PIGEGGFGAVHLCTEV----KTGKRRACKAMRLPTAQD-RDDFRHEVAVLKATgKHKNICHCIDVAEDARYGYLVMQSCTGGELFDRIAAR---NCSE 124
                  69***********999....677778999997666555.9************************************************998...999* PP

                  HHHHHHHHHHHHHHHHHHHTTEEEST-SGGGEEEEE...TTEEEE-STTTHEETTTSSEEEETTSSTSGGGGS-HHHHHHSEEEHHHHHHHHHHHHHH CS
  Pkinase_Tyr 103 kdllsfalqvAkGmeyLeskklvHrdlaarNvLlse...nkvvkisDfGLardiekddeyvkkeeaklpvkWmapEslkekkftsksDvWsfGvllwE 197
                  kd    +++v +++++L++k+++Hrd+   N L ++   ++  k+ DfGLa ++   +  ++++e      +mapE+l+ ++++ + D+Ws Gv+++ 
   KOO22704.1 125 KDAAMAIVDVLAALNHLHTKRIIHRDIKPENLLYKDkqpGSPLKLIDFGLAIQL---QPGQRETEVCGTTSYMAPEVLR-GSYSFECDIWSLGVICFF 218
                  ***********************************9444558************...44456667778899******97.67***************9 PP

                  HHTTSSGTTTTSHHHHHHHHHHTTEE CS
  Pkinase_Tyr 198 iftlgespypglkneevleklkegkr 223
                  +++ g+ p+pg ++ee  +++ +g  
   KOO22704.1 219 MLS-GKLPFPGRSDEEKEARILRGSF 243
                  999.********99998888877655 PP

>> Pkinase_fungal  Fungal protein kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.5   0.0   2.9e-14   7.3e-11     305     397 ..     124     209 ..     102     219 .. 0.86

  Alignments for each domain:
  == domain 1  score: 41.5 bits;  conditional E-value: 2.9e-14
  Pkinase_fungal 305 pkellealrDaIkghrsLflkagiLHrDiSenNilitdskkegerkglLiDLDlakelsddssesgarertGTleFmaievlkgeeHsyrhDL 397
                      k++  a+ D++++++ L+ +++i+HrDi  +N+l    +k+++    LiD+ la++l+  ++e    e  GT+ +ma evl+ ++ s+  D+
      KOO22704.1 124 EKDAAMAIVDVLAALNHLH-TKRIIHRDIKPENLLYK--DKQPGSPLKLIDFGLAIQLQPGQRET---EVCGTTSYMAPEVLR-GSYSFECDI 209
                     56667799***********.**************999..66889999************755554...59*************.456666666 PP

>> Kinase-like  Kinase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.8   0.0     0.097   2.5e+02      17      55 ..      33      71 ..      26      98 .. 0.82
   2 !   30.1   0.0   1.1e-10   2.9e-07     137     260 ..     120     236 ..     109     248 .. 0.80

  Alignments for each domain:
  == domain 1  score: 0.8 bits;  conditional E-value: 0.097
  Kinase-like 17 gellkkgdrsvvfevkdqetgeplavkvfllpseaskkd 55
                  +++++g++++v + ++++tg+ +a k   lp    + d
   KOO22704.1 33 PNPIGEGGFGAVHLCTEVKTGKRRACKAMRLPTAQDRDD 71
                 5899********************999988877665555 PP

  == domain 2  score: 30.1 bits;  conditional E-value: 1.1e-10
  Kinase-like 137 thkkletiarlllTlqlirlaanLqakglvhgkftvdnllldek...gglmlggftaLvragtkvvlseve..kgfaPpEllgsrggytrknktkmth 229
                  ++ +++++a +++  +++    +L+ k ++h +++++nll++ k    +l+l +f+  ++     +  ev+   ++  pE+l             +++
   KOO22704.1 120 RNCSEKDAAMAIV--DVLAALNHLHTKRIIHRDIKPENLLYKDKqpgSPLKLIDFGLAIQLQPGQRETEVCgtTSYMAPEVLRG----------SYSF 205
                  4566777777776..5577788*******************97733357******98888777777678887777888888754..........59** PP

  Kinase-like 230 kldaWqlGlviyriwclklPltlateeakee 260
                  + d W lG+  +++ + klP+    +e ke+
   KOO22704.1 206 ECDIWSLGVICFFMLSGKLPFPGRSDEEKEA 236
                  *********************9888887765 PP

>> APH  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.2   0.0   4.8e-05      0.12      16     106 ..      50     139 ..      46     143 .. 0.75
   2 !   16.9   0.0   1.8e-06    0.0046     154     196 ..     133     175 ..     124     177 .. 0.74

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 4.8e-05
                 EEETT--EE..EEEE-TTS-HHHHHHHHHHHHHHHHTT-B--B-CTTBS-EEETTEEEEEEE----EE-SS...HHHHHHHHHHHHHHHHHHCCHH CS
         APH  16 vttpagryv..lrrnpparaaeeirrevallrlLakagvpvPevlagdtddeeigllfalieyvpgrsllr...klsaaqlpellealgeflaalh 106
                 v+t+++r    +r++ + +   ++r eva+l++  k++  +  +++    +e++++ +++++++ g  l +   + ++++++++  a++++laal 
  KOO22704.1  50 VKTGKRRACkaMRLPTA-QDRDDFRHEVAVLKATGKHKN-ICHCID---VAEDARYGYLVMQSCTGGELFDriaARNCSEKDAAM-AIVDVLAALN 139
                 55666433331445444.599999999999999999955.778888...88899998999988888888887*988888888877.8999999885 PP

  == domain 2  score: 16.9 bits;  conditional E-value: 1.8e-06
                 HHHHHH--SSS-EEEE-SS-SGGGEEEC.....TTEEEEE---TT- CS
         APH 154 aalaallpgelptvllHgDlhpgNllvd...pddgrvtGviDfeda 196
                 + laal +    ++++H+D++p Nll +   p+ +    +iDf++a
  KOO22704.1 133 DVLAALNH-LHTKRIIHRDIKPENLLYKdkqPGSPL--KLIDFGLA 175
                 55555555.468****************86544444..59**9987 PP

>> Kdo  Lipopolysaccharide kinase (Kdo/WaaP) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   0.1   7.7e-06      0.02      94     167 ..     103     173 ..      78     186 .. 0.80

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 7.7e-06
         Kdo  94 llterlegaqdLedllakwaelaeelkrallkavgrliaklhragvnHadlyaknillqqeeeeeaeiwliDld 167
                 l++   +g +  + ++a+  + +e+  ++ + +v ++ + lh   + H+d+ + n+l + ++  +  + liD+ 
  KOO22704.1 103 LVMQSCTGGELFDRIAAR--NCSEKDAAMAIVDVLAALNHLHTKRIIHRDIKPENLLYKDKQ-PGSPLKLIDFG 173
                 666666666555666664..67888888899999999***********************98.999******96 PP

>> PqqD  Coenzyme PQQ synthesis protein D (PqqD)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.0   1.8e-05     0.047      19      67 .]     101     147 ..      98     147 .. 0.93

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 1.8e-05
                 HHHHHHH-SSSS-.HHHHHHHHHHHCT--HHHHHHHHHHHHHHHHCTT-- CS
        PqqD  19 gafiWklldgers.veeivaalaeeydvdeeeaeadvlafldqLrekgli 67 
                 g+++ +++ g +   + i+a+ + e d++   a  dvla l++L++k++i
  KOO22704.1 101 GYLVMQSCTG-GElFDRIAARNCSEKDAAM--AIVDVLAALNHLHTKRII 147
                 9*********.666************9999..***************997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (255 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       411  (0.0229238); expected 358.6 (0.02)
Passed bias filter:                      364  (0.0203023); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.43u 0.25s 00:00:00.68 Elapsed: 00:00:00.39
# Mc/sec: 1954.52
//
Query:       KOO22705.1  [L=553]
Description: nrps protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    7.3e-31  107.2   0.0      1e-30  106.8   0.0    1.2  1  Aminotran_3    Aminotransferase class-III
  ------ inclusion threshold ------
      0.066   12.4   0.1       0.16   11.1   0.0    1.6  2  Aminotran_1_2  Aminotransferase class I and II
       0.18   12.0   2.1       0.32   11.2   2.1    1.3  1  ATG16          Autophagy protein 16 (ATG16)


Domain annotation for each model (and alignments):
>> Aminotran_3  Aminotransferase class-III
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  106.8   0.0   1.7e-34     1e-30      88     351 ..       2     276 ..       1     324 [. 0.91

  Alignments for each domain:
  == domain 1  score: 106.8 bits;  conditional E-value: 1.7e-34
                  SEEEEESSHHHHHHHHHHHHHHHHHHTSHCTT-EEEEETTT---SSHHHHHHSS--TTTTTTCTTB-TSEEEE-TTBGGGTB-HHHHHHHHHHHHHHH CS
  Aminotran_3  88 dkvflansGseAvetAlKlarkyarekkatektkiiafkgafHGrtlgalsvtgskkkyktlfgpflpevvrlkypdeevlkeneeeeaalleeleal 185
                  +  +++++GseA+  A++l+r       +t ++k++ f++++HG+  + l+  ++ +    l+ p++p+++    +d +vl++         e+  a+
   KOO22705.1   2 ESCVFVTTGSEATTLAYRLCRI------HTGRSKVVVFENSYHGHFDAFLGFPAD-PSAPGLCSPVAPGIPASYTQDLIVLPYDT-------EASLAY 85 
                  6789******************......***************************.99999****************99999998.......445567 PP

                  HCHTCCCEEEEEE-SCETTT.TSEB--CCHHHHHHHHHHHHT-EEEEE-TTTTT..TTTSSSSGGGGCTS--SEEEE-GGGGTTSS-EEEEEEHHHHT CS
  Aminotran_3 186 ekkkkdevaAvivEpiqgeg.GvvvaspeflaklrelckkhdvllivDEvqtGf..GrTGklfAlehagvspDlmtlaKaltgGlplsavlataevmq 280
                  +++++ ++a+v  E++q    G v+  + fl++lr+l+++ +++l++DEv tGf  ++ G     e++g+  Dl + +Kal+gG+p+ +v++++++  
   KOO22705.1  86 IDEHAAKIAGVFCEAVQNRNpGLVP--KPFLEALRQLTERRGIVLVFDEVVTGFrvAAGG---VQEKLGIRCDLSCYGKALGGGFPVGCVAGPRNILA 178
                  789999***********86515544..45*************************855555...67888****************************** PP

                  TS-TTS.........................B--TTTT-HHHHHHHHHHHHHHHH..TTHHHHHHHHHHHHHHHHHHHCTT-TTEEEEEEETTEEEEE CS
  Aminotran_3 281 alapgs.........................hgsTfgGnplacavalavleiiee..ekllenaqelgaalkegLeelqkkyevikevRgkGlmiaie 351
                  +++ g+                           +Tf   pla+a++ avl+ i    ++l  + ++l + l + L++  +++    ++   G mi + 
   KOO22705.1 179 RVSGGNelrggdahddarssvptttylettyFEGTFHKHPLAMAAVGAVLDHIVAhgDALFPELDRLAEHLASSLNAWWAQQGLALRIDHFGSMIRFQ 276
                  **9888**********************999899*****************88776799******************999998888888889988765 PP

>> Aminotran_1_2  Aminotransferase class I and II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   2.7e-05      0.16     137     239 ..      81     176 ..      74     185 .. 0.75
   2 ?   -3.7   0.1      0.86   5.2e+03     245     287 ..     356     398 ..     349     405 .. 0.74

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 2.7e-05
                    HHHTTHHCTTETEEEEEEESS-TTT--B--HHHHHHHHHHHHHTTEEEEEEETTTTCBSSSSHTHHHHGGSTTSTT.EEEEEESSSTTSSGGG-EE CS
  Aminotran_1_2 137 ealkeapegnkktkvilvesphNPtGtvatleeleklldlakkynlllfvDeaYagfvfgsldavatranveeepn.llivgslsKafGlaGeRvG 231
                    + l+   e+ +k+ +++ e ++N    + +++ le+l +l+++++++l++De+  gf            +v+e+    + ++ ++Ka+G  G+ vG
     KOO22705.1  81 ASLAYIDEHAAKIAGVFCEAVQNRNPGLVPKPFLEALRQLTERRGIVLVFDEVVTGFRVA-------AGGVQEKLGiRCDLSCYGKALG-GGFPVG 168
                    44444555677788**************************************98888777.......5666666665455666667776.366666 PP

                    EEEEEHHH CS
  Aminotran_1_2 232 yilgnaav 239
                    +++g  ++
     KOO22705.1 169 CVAGPRNI 176
                    66666555 PP

  == domain 2  score: -3.7 bits;  conditional E-value: 0.86
                    HHHHHHTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
  Aminotran_1_2 245 klsrpflsssllqaavaaalsdallkqseleemrqrlqkrrke 287
                    +ls++  sss+  + v+a++ +++ ++ ++ + r+++ ++r+e
     KOO22705.1 356 SLSSSSSSSSPSLQHVVASTGASPAHAAKILQLRDEISRLRRE 398
                    5666666777877888888888888888888888888877775 PP

>> ATG16  Autophagy protein 16 (ATG16)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   2.1   5.3e-05      0.32      23     118 ..     328     420 ..     311     435 .. 0.71

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 5.3e-05
       ATG16  23 aynrLldrtsaleaenaklekaaasaks...sksskksakekeasasqsnskqsakiqsleqklaqlreelaelyksrgelaqrllelneelqkleekl 118
                 a ++Lld      +++ ++++aaa+  s   s      ++++++ + q+  +++  +++ ++k++qlr+e + l ++   + + + +l+e lq+  e +
  KOO22705.1 328 ASSQLLDDLVVEPHHRNSIPPAAATDASslsS------SSSSSSPSLQHVVASTGASPAHAAKILQLRDEISRLRREGHSTVSLIERLKERLQEAGEFS 420
                 56777777777777777777776666653321......11122222224566788999*******************9999999999***999987655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (553 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       495  (0.0276089); expected 358.6 (0.02)
Passed bias filter:                      368  (0.0205254); expected 358.6 (0.02)
Passed Vit filter:                        52  (0.00290033); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.54u 0.25s 00:00:00.79 Elapsed: 00:00:00.40
# Mc/sec: 4188.79
//
Query:       KOO22706.1  [L=95]
Description: hypothetical protein Ctob_001478 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.3e-08   33.4   0.2    7.7e-08   32.2   0.2    1.6  2  ketoacyl-synt  Beta-ketoacyl synthase, N-terminal domain


Domain annotation for each model (and alignments):
>> ketoacyl-synt  Beta-ketoacyl synthase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.4   0.0     0.022   3.9e+02      54      79 ..      23      49 ..       7      52 .. 0.72
   2 !   32.2   0.2   4.3e-12   7.7e-08     189     235 ..      47      93 ..      36      95 .] 0.90

  Alignments for each domain:
  == domain 1  score: 0.4 bits;  conditional E-value: 0.022
                   EE-BSS.EEE..S.TTEGGTTSTHHHH CS
  ketoacyl-synt 54 agkiktklggfld.vddfdpeffgisp 79
                   a  + +++gg++  +++fd++ f i++
     KOO22706.1 23 APLTAASYGGYVYgAEYFDAASFVIPA 49
                   444455678888889999999998876 PP

  == domain 2  score: 32.2 bits;  conditional E-value: 4.3e-12
                    HHTTS-SEEEEEEEE---SHHHHHHHHHTTBB-TTSGGGTTBTTB-S CS
  ketoacyl-synt 189 lrsgeadvalaGGvellltpeavagfsaagllspdgrckafdpkadG 235
                    + +ge  +al+ +++l+l p+++ +f++ag+ls+dgrck+fd++a+G
     KOO22706.1  47 IPAGEPLAALVAAANLILVPNTTLMFARAGMLSADGRCKTFDARANG 93 
                    66788889**************************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (95 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       266  (0.0148363); expected 358.6 (0.02)
Passed bias filter:                      210  (0.0117129); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.23s 00:00:00.60 Elapsed: 00:00:00.40
# Mc/sec: 714.52
//
Query:       KOO22707.1  [L=435]
Description: ck1 ck1 protein kinase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.9e-11   43.2   0.0    1.5e-10   40.9   0.0    1.9  1  Pkinase         Protein kinase domain
    2.3e-05   23.4   0.0    3.3e-05   22.9   0.0    1.2  1  Pkinase_fungal  Fungal protein kinase
     0.0001   21.7   0.0    0.00015   21.2   0.0    1.2  1  Kdo             Lipopolysaccharide kinase (Kdo/WaaP) family
     0.0016   18.4   0.0     0.0036   17.3   0.0    1.7  1  APH             Phosphotransferase enzyme family
  ------ inclusion threshold ------
      0.034   13.4   0.0      0.093   12.0   0.0    1.6  1  Pkinase_Tyr     Protein tyrosine kinase


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.9   0.0   4.3e-14   1.5e-10       4     206 ..      97     318 ..      94     342 .. 0.71

  Alignments for each domain:
  == domain 1  score: 40.9 bits;  conditional E-value: 4.3e-14
                 EEEEEEESSEEEEEEEETTTTEEEEEEEEECHCHCHHHHHHHHHHHHHHHHHS.CTTB--EEEEEEE...SSEEEEEEE--TTEBHHHHHHHHSS--HH CS
     Pkinase   4 leklGeGsfGkVykaveketgkivAvKkikkekakkkkekkvlrEikilkklk.hpnivrlyevfee...kdelylvleyveggeladllerkgslsee 98 
                 +e+lG+G+ ++V+ +v  +    vAvK+  k  a       ++rE ++l  ++      +++++  +   +   +lv+ ++   +l+dll++++s s++
  KOO22707.1  97 KERLGKGTQSEVLLGV--TPTGSVAVKIGLKAFA-------IAREASVLSVMSgVAGFPTMLYYEPDgprSPGGFLVVSLLG-PSLDDLLRTRQSQSQS 185
                 6778888888888888..5666788888776644.......44677777777643333333333333443444456666655.5688888844443333 PP

                 ........HHHHHHHHHHHHHHHHHHTTEE-SS-SGGGEEEE.TTTE.....EEE-SGTTSEESSSSCS...........BCTTTSCGGGS-HHHH.TT CS
     Pkinase  99 ........eakkiakqilegleylHskgiiHrDlKpeNiLid.ekge.....lKitDFGlakelesssk...........ltsfvgtseYlAPEvl.ke 171
                         ++ ++a+ +l+ ++ lH +g +H D+Kp+NiL+   +       l ++DFG +++++ss+            +   vgt +Y +     + 
  KOO22707.1 186 qltrlsgpTLLRVARCMLRLIRRLHVAGYVHNDIKPANILLGaGS-SmqptqLHLIDFGSCTNISSSTLahrmvnendaqAYGPVGTATYASVAADaNV 283
                 3455555588999****************************9433.246788**************998999999999888889999999886666344 PP

                 SCBSHHHHHHHHHHHHHHHHHSS-STTTSSHHHHH CS
     Pkinase 172 neyskkvDvWslGvilyelltgkppfsgekgkekv 206
                 + + ++ D+ sl  +l  l +g+ p++g+ +  kv
  KOO22707.1 284 RTMRPADDLESLVYTLCDLASGSLPWKGQPDAVKV 318
                 55588889999999999999999999955554433 PP

>> Pkinase_fungal  Fungal protein kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.9   0.0   9.1e-09   3.3e-05     307     405 ..     194     300 ..     188     303 .. 0.82

  Alignments for each domain:
  == domain 1  score: 22.9 bits;  conditional E-value: 9.1e-09
  Pkinase_fungal 307 ellealrDaIkghrsLflkagiLHrDiSenNilitdskkegerkglLiDLDlakelsddsses........garertGTleFmaievlkgee.Hs 392
                      ll++ r  ++  r+L+  ag++H+Di   Nil+    + +  +  LiD+   +++s  + ++        +a   +GT+ + ++    +    +
      KOO22707.1 194 TLLRVARCMLRLIRRLH-VAGYVHNDIKPANILLGAGSSMQPTQLHLIDFGSCTNISSSTLAHrmvnendaQAYGPVGTATYASVAADANVRtMR 287
                     57777777888899***.*****************88999999999*******999964333356555544447799*****999998875569* PP

  Pkinase_fungal 393 yrhDLESffyvll 405
                     + +DLES+ y l+
      KOO22707.1 288 PADDLESLVYTLC 300
                     **********987 PP

>> Kdo  Lipopolysaccharide kinase (Kdo/WaaP) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.2   0.0   4.1e-08   0.00015     129     173 ..     204     249 ..     170     261 .. 0.81

  Alignments for each domain:
  == domain 1  score: 21.2 bits;  conditional E-value: 4.1e-08
         Kdo 129 rliaklhragvnHadlyaknillqqee.eeeaeiwliDldkarlrl 173
                 rli++lh ag  H d+ + nill ++   +  ++ liD+  + + +
  KOO22707.1 204 RLIRRLHVAGYVHNDIKPANILLGAGSsMQPTQLHLIDFGSCTNIS 249
                 69***********************9978899*******9998765 PP

>> APH  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   0.0     1e-06    0.0036     127     198 ..     177     247 ..     112     266 .. 0.81

  Alignments for each domain:
  == domain 1  score: 17.3 bits;  conditional E-value: 1e-06
                 HHHHCHHHCCCGCCTCCHHHHHHHHHHHHHHHH--SSS-EEEE-SS-SGGGEEEC........TTEEEEE---TT-EE CS
         APH 127 rqlesatarllaselldlleeleeqvlaalaallpgelptvllHgDlhpgNllvd......pddgrvtGviDfedagl 198
                 r + s+     +s+l  l      +v++++++l ++   ++ +H+D++p N+l+       p++ +   +iDf+ ++ 
  KOO22707.1 177 RTRQSQ----SQSQLTRLSGPTLLRVARCMLRLIRRLHVAGYVHNDIKPANILLGagssmqPTQLH---LIDFGSCTN 247
                 333333....33333333333444499999999999899****************99996555555...8***99875 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   2.6e-05     0.093       4     156 ..      97     251 ..      94     266 .. 0.59

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 2.6e-05
                  EEEEEEESSEEEEEEEEETTTTSSEEEEEEEEESTTSSHHHHHHHHHHHHHHHTS.-BTTB--EEEEEESSSSEEEEEE--TTEBHHHHHHHT..... CS
  Pkinase_Tyr   4 gkklGeGafGkVvegtlkgekekkevkVavKtlkeeateeekeelleeakimkkl.khpnivkllgvctkeepllivteyvkgGdLlkfLrkk..... 95 
                  +++lG+G+ ++V  g         + +VavK+  +     +++   + +++m+ +   p ++ +     ++   ++v+ ++ g +L++ Lr++     
   KOO22707.1  97 KERLGKGTQSEVLLGVTP------TGSVAVKIGLKAFAIAREA---SVLSVMSGVaGFPTMLYYEPDGPRSPGGFLVVSLL-GPSLDDLLRTRqsqsq 184
                  667777777777777766......6667777653333333222...22334444433333333333333333355666555.4589999999844443 PP

                  .CTTTSBHHHHHHHHHHHHHHHHHHHHTTEEEST-SGGGEEEEE.....TTEEEE-STTTHEETTTS CS
  Pkinase_Tyr  96 .ekekltlkdllsfalqvAkGmeyLeskklvHrdlaarNvLlse.....nkvvkisDfGLardiekd 156
                   + ++l+  +ll++a  + + ++ L+   +vH d+   N+Ll        ++  + DfG + +i+++
   KOO22707.1 185 sQLTRLSGPTLLRVARCMLRLIRRLHVAGYVHNDIKPANILLGAgssmqPTQLHLIDFGSCTNISSS 251
                  33344444455555555555556778889*************9866666678899999988888444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (435 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       269  (0.0150036); expected 358.6 (0.02)
Passed bias filter:                      229  (0.0127726); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.47u 0.27s 00:00:00.74 Elapsed: 00:00:00.42
# Mc/sec: 3142.37
//
Query:       KOO22708.1  [L=554]
Description: pheophorbide a oxygenase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.6e-18   64.7   0.0    1.1e-17   63.8   0.0    1.4  1  Rieske    Rieske [2Fe-2S] domain
    3.2e-17   62.4   0.0      1e-16   60.8   0.0    1.9  2  PaO       Pheophorbide a oxygenase


Domain annotation for each model (and alignments):
>> Rieske  Rieske [2Fe-2S] domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.8   0.0   1.2e-21   1.1e-17       2      81 ..      28     108 ..      27     116 .. 0.93

  Alignments for each domain:
  == domain 1  score: 63.8 bits;  conditional E-value: 1.2e-21
                 EEEEEEGGGC-TTCEEEEEETTEEEEEEE-T.TS-EEEEESC-TTTT-BCGGSEEETT.EEE-TTT--EEETTSBEEE-TT CS
      Rieske   2 wvavakesdvpegdpltvkvggeplvvlrde.dgevyAlsdvCtHrgaplsegkidekgvleCpcHgwaydadGkvikgPa 81 
                 w+++a ++  ++  p++++++geplv++ d  ++ + A+ d C+Hr aplseg+idekg++eCp+Hgwa++ dG+++ +P+
  KOO22708.1  28 WYPLAFSKVTDRSVPHRLELLGEPLVLWYDGvNEAWCAMIDACPHRLAPLSEGRIDEKGAIECPYHGWAFESDGRCTRVPQ 108
                 88888888888888***************777999********************************************97 PP

>> PaO  Pheophorbide a oxygenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.7   0.0       1.5   1.4e+04      43      67 ..      30      54 ..      23      57 .. 0.72
   2 !   60.8   0.0   1.1e-20     1e-16       1      85 [.     256     367 ..     256     369 .. 0.94

  Alignments for each domain:
  == domain 1  score: -3.7 bits;  conditional E-value: 1.5
         PaO 43 arnfaswlkklvPrwlkhiasnkvl 67
                +  f++ +++ vP  l+ +++ +vl
  KOO22708.1 30 PLAFSKVTDRSVPHRLELLGEPLVL 54
                5668888899999888877776665 PP

  == domain 2  score: 60.8 bits;  conditional E-value: 1.1e-20
         PaO   1 FvpPclvkiaieledeeke.........krlllvlycvPtapGksrliakfarnfaswlkkl..................vPrwlkhiasnkvldqDla 72 
                 F++P +++++i+++   +           ++++v y++Pt+pG++rl+a+f+++f +  ++                   vP+w +h+++ kvld+D +
  KOO22708.1 256 FRAPTYMHHKIRSGGLAGTdaendfdagFETWTVAYATPTGPGRCRLFARFPFRFPPPKPRTgllgklpsinlpaevfrrVPTWAQHMGQLKVLDDDNI 354
                 99999999999998876667889999999********************************9************************************* PP

         PaO  73 lLheqerklakeg 85 
                 +L  qer++a+ g
  KOO22708.1 355 FLPLQERRVADVG 367
                 *********9976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (554 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       351  (0.0195772); expected 358.6 (0.02)
Passed bias filter:                      276  (0.0153941); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.47u 0.23s 00:00:00.70 Elapsed: 00:00:00.37
# Mc/sec: 4511.99
//
Query:       KOO22709.1  [L=352]
Description: hypothetical protein Ctob_009628 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (352 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       486  (0.0271069); expected 358.6 (0.02)
Passed bias filter:                      289  (0.0161191); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.45u 0.25s 00:00:00.70 Elapsed: 00:00:00.41
# Mc/sec: 2586.84
//
Query:       KOO22710.1  [L=195]
Description: hypothetical protein Ctob_009630 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.1e-13   50.7   1.7    2.6e-13   50.4   1.7    1.1  1  FA_desaturase  Fatty acid desaturase


Domain annotation for each model (and alignments):
>> FA_desaturase  Fatty acid desaturase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.4   1.7   1.4e-17   2.6e-13     117     243 ..      16     148 ..       2     156 .. 0.80

  Alignments for each domain:
  == domain 1  score: 50.4 bits;  conditional E-value: 1.4e-17
  FA_desaturase 117 wlrrlarrrapsksrrrkwrllawlllllawlglwlalllllglall.lwlvplllllfllalvlnyveHyg.gdwgerqvetsasir....sasw 206
                    +l +  r+ ++++ + r+   + +++ l+++lg++++ +  +++a l ++l+  l++l+ l + + +++ +  ++ + rq++++ s++      + 
     KOO22710.1  16 YLVAAIRTDDQANPALRRSLAVQACASLCGYLGIAALSVSQASWAPLgFYLASSLFWLSPLNINFAWTSPHPcQRGDSRQLQPTVSFYtprnAFGA 111
                    4455555666666666667888888888889999999999999988899999999998888888766655556***************98888888 PP

  FA_desaturase 207 llnlltgnlnyHieHHlfPgvpwyrLpelhrrlrell 243
                    ll+  +g+ nyH+eHH fP+++ y Lp+l+++  e++
     KOO22710.1 112 LLDVYMGWENYHVEHHDFPDIAQYLLPRLREIAPEAY 148
                    99999************************98766654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (195 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       357  (0.0199119); expected 358.6 (0.02)
Passed bias filter:                      317  (0.0176809); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.25s 00:00:00.65 Elapsed: 00:00:00.41
# Mc/sec: 1440.10
//
Query:       KOO22711.1  [L=184]
Description: cre-tyr-3 protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.4e-35  120.3  61.6    2.1e-10   40.9   7.0    5.1  5  ShK       ShK domain-like


Domain annotation for each model (and alignments):
>> ShK  ShK domain-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.3   0.6   8.9e-05       1.6      27      38 .]       1      12 [.       1      12 [. 0.91
   2 !   36.8  11.1   2.4e-13   4.3e-09       1      38 []      16      51 ..      16      51 .. 0.98
   3 !   40.9   7.0   1.2e-14   2.1e-10       1      38 []      54      89 ..      54      89 .. 0.99
   4 !   27.8   7.3   1.5e-10   2.8e-06       1      38 []     101     137 ..     101     137 .. 0.97
   5 !   29.9   5.2   3.3e-11   5.9e-07       1      38 []     140     175 ..     140     175 .. 0.99

  Alignments for each domain:
  == domain 1  score: 9.3 bits;  conditional E-value: 8.9e-05
         ShK 27 mkeqCpktCgfC 38
                m + Cp +Cg+C
  KOO22711.1  1 MLKECPISCGIC 12
                6789******** PP

  == domain 2  score: 36.8 bits;  conditional E-value: 2.4e-13
         ShK  1 tCtDpssdCaswaalgfCtnptyrdlmkeqCpktCgfC 38
                +CtD++ +C swa+ + C++++  ++m+++Cpk+C +C
  KOO22711.1 16 ECTDRKFQCESWARSNACNDNP--EFMTKYCPKSCEVC 51
                5*********************..************** PP

  == domain 3  score: 40.9 bits;  conditional E-value: 1.2e-14
         ShK  1 tCtDpssdCaswaalgfCtnptyrdlmkeqCpktCgfC 38
                tC+D ++dC+ w+a+g+C +++  ++  ++Cpk+Cg+C
  KOO22711.1 54 TCVDMHTDCPGWTANGECFKNP--TYLYKHCPKSCGVC 89
                7********************9..************** PP

  == domain 4  score: 27.8 bits;  conditional E-value: 1.5e-10
         ShK   1 tCtDps.sdCaswaalgfCtnptyrdlmkeqCpktCgfC 38 
                 +C D++ ++C  wa  g+C  ++    + +qCp +Cg+C
  KOO22711.1 101 PCSDFNtTQCHIWADSGQCAENP--LAVMKQCPESCGVC 137
                 7***999*************999..99************ PP

  == domain 5  score: 29.9 bits;  conditional E-value: 3.3e-11
         ShK   1 tCtDpssdCaswaalgfCtnptyrdlmkeqCpktCgfC 38 
                 tCtD++  C++wa +  C + +  ++m   Cp++Cg+C
  KOO22711.1 140 TCTDHHEGCRAWAFAKKCYDEP--AFMLRVCPASCGIC 175
                 7*********************..************** PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (184 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       677  (0.0377601); expected 358.6 (0.02)
Passed bias filter:                      124  (0.00691617); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.25s 00:00:00.65 Elapsed: 00:00:00.42
# Mc/sec: 1301.51
//
Query:       KOO22712.1  [L=523]
Description: flagellar associated protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
      2e-18   66.3  17.9      2e-18   66.3  17.9    5.2  5  NYD-SP28        Sperm tail
    1.8e-09   37.5   0.0    1.8e-09   37.5   0.0    3.6  4  NYD-SP28_assoc  Sperm tail C-terminal domain
  ------ inclusion threshold ------
        1.2    8.9   5.8       0.65    9.7   1.4    2.7  2  Lectin_N        Hepatic lectin, N-terminal domain
        1.9    8.3   4.9       0.72    9.7   0.7    2.3  2  Pox_LP_H2       Viral late protein H2
        6.1    7.5   6.3        3.4    8.3   1.0    2.9  2  zf-C2H2_3rep    Zinc finger C2H2-type, 3 repeats


Domain annotation for each model (and alignments):
>> NYD-SP28  Sperm tail
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.3  17.9   5.6e-22     2e-18       4      98 ..      38     132 ..      35     135 .. 0.97
   2 ?   -2.4   0.0       1.4   4.9e+03      73      96 ..     136     159 ..     136     163 .. 0.80
   3 ?   -2.9   4.5         2     7e+03      27      27 ..     218     218 ..     166     255 .. 0.55
   4 ?   -2.0   9.6       1.1   3.9e+03       5      46 ..     271     312 ..     265     335 .. 0.78
   5 ?    1.1   0.8      0.11     4e+02      20      64 ..     329     373 ..     318     376 .. 0.85

  Alignments for each domain:
  == domain 1  score: 66.3 bits;  conditional E-value: 5.6e-22
    NYD-SP28   4 areeerrreeeelrqerkekleeeaksseekfeeinekWreilrknkpqeLrkeleeqkqaceelideKdklikelqeeLkekdeqyvkalrkqa 98 
                 + eee r++e+ +++e+k++   e+k+++ +  +i  +Wr+++r  k ++Lrke+e+ +q+ e+ +d+Kd++i+ l ++L+e+++qy +alr++ 
  KOO22712.1  38 KAEEEARAKEAARKNELKNRQDSEKKHANVNRLKILTQWRKLMRLVKVEDLRKEIEIISQQHEREVDRKDAIIQVLDRDLEESEDQYQMALRAHL 132
                 57999****************************************************************************************96 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 1.4
    NYD-SP28  73 dklikelqeeLkekdeqyvkalrk 96 
                 d+li++ +  L++ + +++k+l++
  KOO22712.1 136 DRLIDMHNARLRNIEYDFEKDLQE 159
                 678888888899999999998875 PP

  == domain 3  score: -2.9 bits;  conditional E-value: 2
    NYD-SP28  27 e 27 
                 e
  KOO22712.1 218 E 218
                 1 PP

  == domain 4  score: -2.0 bits;  conditional E-value: 1.1
    NYD-SP28   5 reeerrreeeelrqerkekleeeaksseekfeeinekWreil 46 
                 ++++r ++ +++ + +k+kl+  a+++ee++++++++ + i 
  KOO22712.1 271 QQMRRLQRLQDQIAHWKQKLATNARKCEERNKAMKAEKDAIF 312
                 455666888999999*******************99988775 PP

  == domain 5  score: 1.1 bits;  conditional E-value: 0.11
    NYD-SP28  20 rkekleeeaksseekfeeinekWreilrknkpqeLrkeleeqkqa 64 
                   ++l+e + +s++    ++e+ + ++r+    eL + le+ +++
  KOO22712.1 329 EAARLQELSINSNAAISTLTERKKVAERILSHAELCRYLETEREK 373
                 4578999999*******************9999999999987765 PP

>> NYD-SP28_assoc  Sperm tail C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.2       1.8   6.4e+03      35      56 ..     201     222 ..     200     223 .. 0.81
   2 ?   -2.1   0.1       1.2   4.4e+03      16      46 ..     302     332 ..     286     335 .. 0.64
   3 ?   -2.2   0.1       1.3   4.7e+03      31      42 ..     346     357 ..     344     363 .. 0.82
   4 !   37.5   0.0     5e-13   1.8e-09      14      60 .]     410     456 ..     401     456 .. 0.95

  Alignments for each domain:
  == domain 1  score: -2.6 bits;  conditional E-value: 1.8
  NYD-SP28_assoc  35 RaklieetesLekqNeeLrnlL 56 
                     Ra+  +  e++++ N+e  n+L
      KOO22712.1 201 RAEFESTREEIKNRNSEEYNIL 222
                     8889999999999999966665 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 1.2
  NYD-SP28_assoc  16 klWdalekaLekYhevLteRaklieetesLe 46 
                     k ++a  +a+  + + L+ R +  +e e+ +
      KOO22712.1 302 KAMKAEKDAIFGHFQELKGRMNKFREREAAR 332
                     4445555555555666777777777777655 PP

  == domain 3  score: -2.2 bits;  conditional E-value: 1.3
  NYD-SP28_assoc  31 vLteRaklieet 42 
                     +LteR+k+ e++
      KOO22712.1 346 TLTERKKVAERI 357
                     79****998876 PP

  == domain 4  score: 37.5 bits;  conditional E-value: 5e-13
  NYD-SP28_assoc  14 klklWdalekaLekYhevLteRaklieetesLekqNeeLrnlLkqyl 60 
                      ++ W+ l++++++Y++vL +  ++ +e   L+ +N  Lr++Lkqyl
      KOO22712.1 410 PVEEWNCLDNFFKRYNKVLLDVLAIERERARLRSENGDLRSILKQYL 456
                     5789******************************************8 PP

>> Lectin_N  Hepatic lectin, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.2   0.1      0.22   7.9e+02      77      77 ..     112     112 ..      22     173 .. 0.58
   2 ?    9.7   1.4   0.00018      0.65      55     121 ..     253     322 ..     240     326 .. 0.80

  Alignments for each domain:
  == domain 1  score: -0.2 bits;  conditional E-value: 0.22
    Lectin_N  77 a 77 
                  
  KOO22712.1 112 V 112
                 2 PP

  == domain 2  score: 9.7 bits;  conditional E-value: 0.00018
    Lectin_N  55 reLetLketfsnfssstlae...iqalssqggslsekvtsleaklekkqqdlkadhselllhvkqlvkdL 121
                 ++++tL  + + ++ +++ +   +q l+ q  ++++k+++   k e++++++ka++  ++ h ++l+  +
  KOO22712.1 253 QDFKTLTRNDQKSARTIEQQmrrLQRLQDQIAHWKQKLATNARKCEERNKAMKAEKDAIFGHFQELKGRM 322
                 578888777766666655551115667779999*******************************998665 PP

>> Pox_LP_H2  Viral late protein H2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.2      0.38   1.4e+03      63      92 ..       2      32 ..       1      39 [. 0.82
   2 ?    9.7   0.7    0.0002      0.72      49      98 ..     263     312 ..     257     318 .. 0.90

  Alignments for each domain:
  == domain 1  score: -1.0 bits;  conditional E-value: 0.38
   Pox_LP_H2 63 ariknavksWkplvesktk.lesdrGrllaa 92
                a+ik+++k+  ++v +k k lesd+ r+l+ 
  KOO22712.1  2 AKIKKQMKGGSKVVGKKGKtLESDQERQLRF 32
                6899999999999999986589999998765 PP

  == domain 2  score: 9.7 bits;  conditional E-value: 0.0002
   Pox_LP_H2  49 qvsdnsvlselakyariknavksWkplvesktklesdrGrllaaerddlf 98 
                 q s  ++ +++ + +r+++++++Wk+ +++ ++   +r ++++ae+d +f
  KOO22712.1 263 QKSARTIEQQMRRLQRLQDQIAHWKQKLATNARKCEERNKAMKAEKDAIF 312
                 6677788899***********************99***********9998 PP

>> zf-C2H2_3rep  Zinc finger C2H2-type, 3 repeats
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.2   0.4      0.31   1.1e+03      58      88 ..      41      71 ..      23      85 .. 0.67
   2 ?    8.3   1.0   0.00096       3.4      40     102 ..     235     297 ..     230     319 .. 0.87

  Alignments for each domain:
  == domain 1  score: 0.2 bits;  conditional E-value: 0.31
  zf-C2H2_3rep 58 sdfklskvaqkknlsasedssqklelsksas 88
                  ++ + +++a+k++l++ +ds++k+ + +  +
    KOO22712.1 41 EEARAKEAARKNELKNRQDSEKKHANVNRLK 71
                  4566667777777777777777776666544 PP

  == domain 2  score: 8.3 bits;  conditional E-value: 0.00096
  zf-C2H2_3rep  40 shfgnaeelwlhvlsvhpsdfklskvaqkknlsasedssqklelsksasvennsenesgvrkf 102
                    hf +a++ ++    v ++dfk+++ +++k++ + e+++++l+  + ++ + +++ +++ rk 
    KOO22712.1 235 RHFDSAHQNYMATTEVRTQDFKTLTRNDQKSARTIEQQMRRLQRLQDQIAHWKQKLATNARKC 297
                   6******************************99999999999999998888777777777775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (523 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2776  (0.154833); expected 358.6 (0.02)
Passed bias filter:                      591  (0.0329634); expected 358.6 (0.02)
Passed Vit filter:                        64  (0.00356964); expected 17.9 (0.001)
Passed Fwd filter:                        15  (0.000836633); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.83u 0.30s 00:00:01.12 Elapsed: 00:00:00.47
# Mc/sec: 3338.49
//
Query:       KOO22713.1  [L=512]
Description: ctl-like protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.3e-50  171.7  15.0      5e-50  170.5  11.9    2.1  2  Choline_transpo  Plasma-membrane choline transporter


Domain annotation for each model (and alignments):
>> Choline_transpo  Plasma-membrane choline transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    1.9   0.0    0.0058     1e+02     261     318 ..      58     125 ..      46     130 .. 0.67
   2 !  170.5  11.9   2.8e-54     5e-50       3     325 ..     158     447 ..     155     448 .. 0.88

  Alignments for each domain:
  == domain 1  score: 1.9 bits;  conditional E-value: 0.0058
  Choline_transpo 261 llialltgli.aylllkatltnpe.........elnsplvpllvvfiiayliasiflsvyesavdtif 318
                       l +++++++ ++ +++    +p+         + +++l++l+v+ ++a+++a + l +++s++ +++
       KOO22713.1  58 ALGVVAIAIAnGVSVVRGAAGHPAgdpervkgeRSHQMLIMLVVASFVAAVLAACWLLLLRSGARALI 125
                      43334444444555555444444466667777777888888999999999999999999998888776 PP

  == domain 2  score: 170.5 bits;  conditional E-value: 2.8e-54
  Choline_transpo   3 llivavllllllivlrkrirlaiallkvaskaiksnpslllvplltllllllvsafwivvavalylassgestdkvnsgsesglaavefesssk 96 
                       l+++++ l +l+  r+r+++++ ll  ++   + +p ++ v++ +  ++ll++++w+++++++    s+                      ++
       KOO22713.1 158 SLLAGLMCLAFLVTNRHRVEFSAHLLARVASLTRLYPGTVYVAIGCAGVMLLWTLIWTAAVSYT----SQM---------------------RN 226
                      56777888999999***********************************************333....221.....................12 PP

  Choline_transpo  97 vkalllyllfgllWtleflralqqvtvagavasWYfskkkdlp.skfpvlkslkraltyhlGSialgSlilaivqllrlileylekklkkkena 189
                         +l++l++++lW+ ++lra++++tvag+vas Yf    +++ +++p+ +sl+r+lt+++GS++lg+l+ a ++++r++++ ++k+  ++   
       KOO22713.1 227 QATVLVLLMLSYLWMAQLLRAVVHTTVAGTVASDYFL---SPHvPRDPTSRSLRRSLTTSFGSLCLGALVAAALKTARAAASAASKNGPDR--F 315
                      235789999****************************...45567789**********************************833333322..2 PP

  Choline_transpo 190 vakcllcclkcclwclekflkflnrnayimvaiyGksFcesakdafellkrngl.rvavldsvvdfvlflgkllialltgliaylllkatltnp 282
                          l + + c+l++l+ + +f n  ay++va+yGk F ++++d++ ll+ +   +++v   +++++l+l++ll +l+++li+ ++ +atl ++
       KOO22713.1 316 ---GLRSAALCLLGFLDVLTQFCNELAYTQVALYGKTFTRASRDTWTLLVHHSGvDALVQRELISTALTLSSLLSGLVCSLICGVWARATLGDD 406
                      ...334445567788***********************************99977***************************989999877777 PP

  Choline_transpo 283 eelnsplvpllvvfiiayliasiflsvyesavdtifvcfaeDp 325
                        + +++  l  +f+i+y  +s++  ++es+++++fvc+aeDp
       KOO22713.1 407 --QPQWWQSLSAAFLIGYAAVSLVSVTVESGTNALFVCYAEDP 447
                      ..6999999*********************************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (512 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       957  (0.0533772); expected 358.6 (0.02)
Passed bias filter:                      383  (0.021362); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.60u 0.27s 00:00:00.87 Elapsed: 00:00:00.44
# Mc/sec: 3472.67
//
Query:       KOO22714.1  [L=51]
Description: hypothetical protein Ctob_009635, partial [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (51 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       107  (0.00596798); expected 358.6 (0.02)
Passed bias filter:                       88  (0.00490825); expected 358.6 (0.02)
Passed Vit filter:                         9  (0.00050198); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.23s 00:00:00.54 Elapsed: 00:00:00.37
# Mc/sec: 416.85
//
Query:       KOO22715.1  [L=663]
Description: glutaminyl-tRNA synthetase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
   2.2e-101  338.9   0.0   2.8e-101  338.5   0.0    1.1  1  tRNA-synt_1c    tRNA synthetases class I (E and Q), catalytic
    6.7e-57  192.1   0.0    1.1e-56  191.4   0.0    1.4  1  tRNA-synt_1c_C  tRNA synthetases class I (E and Q), anti-codo


Domain annotation for each model (and alignments):
>> tRNA-synt_1c  tRNA synthetases class I (E and Q), catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  338.5   0.0  3.2e-105  2.8e-101       1     313 [.      45     360 ..      45     361 .. 0.97

  Alignments for each domain:
  == domain 1  score: 338.5 bits;  conditional E-value: 3.2e-105
                   S-EEEE---SSSS-BHHHHHHHHHHHHHHHHTT-EEEEEE--SSCCC--HHHHHHHHHHHHHTT---S..SEEEEGGGGHHHHHHHHHHHHHTTSEE CS
  tRNA-synt_1c   1 kVrtRfaPePtGyLHiGhakaallnylfAknnnGkfilRieDTdperekeeaeesiledlkwlgikwd..ekptyqsdrfdelkkyaeeLikkGkAY 95 
                   +++tRf+PeP+GyLHiGhak++++n+++  +++G  ++R++DT+p +e++e++++i +d+ wlg++w+  e++t++sd+f +++++a+ Lik+GkAY
    KOO22715.1  45 QIVTRFPPEPNGYLHIGHAKSICVNFGLGEAFGGVTYMRFDDTNPDKEEQEYIDAIQQDVRWLGFDWKvpERLTHASDYFGRFHEMAVLLIKRGKAY 141
                   589*****************************************************************9999************************* PP

                   EE-STHHHHHHHHCCSS..HSS-TTTTS-HHHHHHHHHHHHHTTHSTTTS-EEEESSBTTSS.GGGSSTEEEEEEESGGGSBTTTBTSTSEEE-HHH CS
  tRNA-synt_1c  96 vcectkeeleeereeqe..klgskerdrydeenlklfeeemkkgkaegekavvRlkideess.vefrDlvrgriklepqeihdlvivksdiyPtYdf 189
                   v+  t+ee++e+r++ +    +s++r+r++eenl+lf ++m+kg+  ++++v+Rlkid++s+ +++rD+ ++rik ++   h+++++++++yP+Yd+
    KOO22715.1 142 VDSLTAEEMREYRGSLTqpGRDSPYRERSVEENLALF-DKMTKGEVPDGEMVLRLKIDMSSPnINMRDPPAYRIKRNS--EHPRTGTQWKVYPMYDY 235
                   **************988678999**************.89***********************************999..7**************** PP

                   HHHHHHHHTT-SEEEEEGGGGCCHHHHHHHHHHT..T-S.-EEEEEE--EEETTSB-SHHHHHHHHHTTSSSSTT-TTSCBHHHHHHCTB-HHHHHH CS
  tRNA-synt_1c 190 avvidDaleeithvlrteefldntpkyiwlleal..glevppfiheylrlnlekkklSKRklsllvdekqvkewddlreallnflrrlGwtpekere 284
                   a+++ Dale ith+l+t ef+d +p y+wl++ l  +l+++p + e++rlnl++ ++SKRkl +lv+e +v +wdd+r++++++lrr+G++pe+ r 
    KOO22715.1 236 AHPLTDALESITHSLCTLEFEDHRPLYDWLMDHLadQLPARPRQIEFSRLNLQYCVVSKRKLLQLVNEGHVAGWDDPRMPTIRGLRRRGVPPEAMRL 332
                   *********************************944577899******************************************************* PP

                   HHHHHCCCSSS.EEEEHHHHHHHHHHHHH CS
  tRNA-synt_1c 285 lftreeliksfdlnresksleafdrkkLe 313
                   +++r +++k++ +n+ ++ le + r+ L+
    KOO22715.1 333 FVERTGVSKAD-NNIDYSVLEDCARECLD 360
                   **********9.99999999999998876 PP

>> tRNA-synt_1c_C  tRNA synthetases class I (E and Q), anti-codon binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  191.4   0.0   1.3e-60   1.1e-56       1     174 []     363     551 ..     363     551 .. 0.98

  Alignments for each domain:
  == domain 1  score: 191.4 bits;  conditional E-value: 1.3e-60
  tRNA-synt_1c_C   1 ApRymaVldpvkvtienlpegkeeelevplhpknpelgtrkvpfskeiyiereD........akrlkpgeevrLkelynikveevekdesgevte 87 
                     ApR+maVl+p++v+++ +peg+++ l++p+hpk pelg r +pf+++++ier+D        ++rl+pg evrL+++y+i+++ev kd++g+v+e
      KOO22715.1 363 APRAMAVLEPLRVVVTSWPEGQVDILDAPMHPKLPELGRRAIPFTRTLLIERTDfeeapppgYQRLTPGGEVRLRYGYVIRCDEVIKDADGNVVE 457
                     8********************************************************************************************** PP

  tRNA-synt_1c_C  88 lkleydgesleea.rkkkgiihWvsaeeaveaevrlYdrLfkeee.de...dfl..lnpdslkvleeglaepalanlkkgdivQfeRiGyfrvd 174
                     l+++ +++++++a rk+kgiihW+s+ ++ +a+v+lYdrLfk+++  +   +fl  +np+sl vle + +e+ +a++++g+++QfeR Gyf+vd
      KOO22715.1 458 LRCTHEPDTRQGAgRKVKGIIHWLSEPHSSRAKVNLYDRLFKVPDpGSggrEFLsdVNPESLSVLEGCAVESYVADAEPGTRLQFERAGYFCVD 551
                     **********999*****************************999877897888***************************************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (663 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       893  (0.0498076); expected 358.6 (0.02)
Passed bias filter:                      519  (0.0289475); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.63u 0.30s 00:00:00.93 Elapsed: 00:00:00.45
# Mc/sec: 4385.06
//
Query:       KOO22716.1  [L=103]
Description: hypothetical protein Ctob_008301 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (103 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       273  (0.0152267); expected 358.6 (0.02)
Passed bias filter:                      193  (0.0107647); expected 358.6 (0.02)
Passed Vit filter:                        12  (0.000669307); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.25s 00:00:00.62 Elapsed: 00:00:00.42
# Mc/sec: 734.40
//
Query:       KOO22717.1  [L=275]
Description: clip-associating protein 1 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
      5e-17   62.2   0.3    6.6e-17   61.8   0.3    1.1  1  CLASP_N         CLASP N terminal
      0.006   16.9  13.2      0.035   14.5   2.0    3.5  4  HEAT_2          HEAT repeats
  ------ inclusion threshold ------
      0.048   13.5   3.7       0.48   10.3   0.7    2.2  2  Apolipoprotein  Apolipoprotein A1/A4/E domain
        1.8    8.8   6.9       0.12   12.6   0.5    2.4  2  DUF4148         Domain of unknown function (DUF4148)
        2.1    8.8  14.7        1.3    9.4   0.3    5.5  6  HEAT            HEAT repeat


Domain annotation for each model (and alignments):
>> CLASP_N  CLASP N terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.8   0.3   1.8e-20   6.6e-17      15     219 ..      65     260 ..      54     268 .. 0.88

  Alignments for each domain:
  == domain 1  score: 61.8 bits;  conditional E-value: 1.8e-20
     CLASP_N  15 ketelnwdaReknilklrslikgnvpedaveelleclkqlleailkalssLrttlsstgchllkelaiqlkeqldpmveillptLlkllgdtKkiisqn 113
                  e  + w+aR +++++l  l +  + e+  e + e++      ++++l +Lr++++  +c ++  l++  +++++p+v +llp+Ll    +  k+i+++
  KOO22717.1  65 TEAHEQWEARTAALQELLPLFQRAADEEVLEWVQEAVS---RPLASQLEDLRSSVVRVACDVVTALLKAHGRAIAPLVTALLPSLLHNACNVVKVIANS 160
                 677889*************9999988888888888887...9********************************************9999999999877 PP

     CLASP_N 114 anqalaallsnasfsprilqvlsvalqdKnvqpReysaiwLkilltrfeshkskleasllldliekslkkgleDanptVRetaRstfweffkvwPsrAk 212
                 ++++   + + ++ +p +l  l   ++dK +q+R  ++  L+ ++ + +     ++++  + +  k+l ++ +D++ + Re+a  +fw +++ +P+ A+
  KOO22717.1 161 SSTVALLVAETVP-TPPLLACLLHHSSDKHAQTRRAVCDSLAAAIAQGA----PISERV-VGETAKALGRLTADSDVKAREAAGRAFWALHSRFPAAAE 253
                 7766666777777.9**************************99998888....555555.56789********************************** PP

     CLASP_N 213 sllssld 219
                 +l +++ 
  KOO22717.1 254 ALRNGFT 260
                 9987775 PP

>> HEAT_2  HEAT repeats
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.9   0.8    0.0023       8.3       6      39 ..      62     100 ..      24     102 .. 0.54
   2 !    6.8   1.7    0.0024       8.5       6      42 ..      62     103 ..      57     143 .. 0.77
   3 !   13.5   1.4     2e-05     0.073      26      86 ..     171     240 ..     135     242 .. 0.66
   4 !   14.5   2.0   9.9e-06     0.035       2      80 ..     175     268 ..     174     270 .. 0.75

  Alignments for each domain:
  == domain 1  score: 6.9 bits;  conditional E-value: 0.0023
      HEAT_2   6 qal.endpdpevrraairaLg....rignpealpaLvel 39 
                 +a+ e ++ +e r aa+++L     r +++e+l+++ e+
  KOO22717.1  62 KAAtEAHEQWEARTAALQELLplfqRAADEEVLEWVQEA 100
                 222133555555555555555555444555555555544 PP

  == domain 2  score: 6.8 bits;  conditional E-value: 0.0024
      HEAT_2   6 qal.endpdpevrraairaLg....rignpealpaLvelled 42 
                 +a+ e ++ +e r aa+++L     r +++e+l+++ e+++ 
  KOO22717.1  62 KAAtEAHEQWEARTAALQELLplfqRAADEEVLEWVQEAVSR 103
                 4441569*************9999888999**9999999865 PP

  == domain 3  score: 13.5 bits;  conditional E-value: 2e-05
      HEAT_2  26 rignpealpaLvellededpavRraaaeaLgai...g...dpe....alpaLkellddddddvvReaAaea 86 
                 +  +p +l++L+   +d+++ +Rra++++L+a    g   +++    +++aL + l+ d+d   ReaA +a
  KOO22717.1 171 TVPTPPLLACLLHHSSDKHAQTRRAVCDSLAAAiaqGapiSERvvgeTAKALGR-LTADSDVKAREAAGRA 240
                 445667789999999999999999999999843243233423333325566666.4455555558888766 PP

  == domain 4  score: 14.5 bits;  conditional E-value: 9.9e-06
      HEAT_2   2 daLlqalen...dpdpevrraairaLg...rignp.......ealpaLvellededpavRraaaeaLgaigd..pealpaLkellddddddvvR 80 
                 ++Ll+ l +   d++ ++rra++++L+    +g p       e+ +aL +l  d+d   R+aa +a  a+ +  p+a++aL+  +++ + ++v+
  KOO22717.1 175 PPLLACLLHhssDKHAQTRRAVCDSLAaaiAQGAPiservvgETAKALGRLTADSDVKAREAAGRAFWALHSrfPAAAEALRNGFTRSQLALVK 268
                 5666666552336666799999999997553344477778888899999999999999999999999999887899999999888777666665 PP

>> Apolipoprotein  Apolipoprotein A1/A4/E domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.7   0.00014      0.48      48     110 ..      55     118 ..      35     149 .. 0.75
   2 ?    4.2   0.1    0.0095        34      90     143 ..     219     272 ..     180     275 .] 0.52

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.00014
                     HHHHHCCCCHHHHHHCCCHHHHHHHHHCCHHHHHHHHHHHHCHHC.CHHCHCCHCHHHHHHHHH CS
  Apolipoprotein  48 evrarlepyrdevqeqlgqnleelrqrlapyteelrerlaadaee.lqeqlavyaeelrerler 110
                     e+  +l+  + e++eq+++++ +l++ l  + ++  e +++ ++e + + la+  e+lr+++ r
      KOO22717.1  55 EAATKLSKAATEAHEQWEARTAALQELLPLFQRAADEEVLEWVQEaVSRPLASQLEDLRSSVVR 118
                     5566777888888888888888888887777777777777744441556677777777777665 PP

  == domain 2  score: 4.2 bits;  conditional E-value: 0.0095
                     HHCCHHCHCCHCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH---- CS
  Apolipoprotein  90 aeelqeqlavyaeelrerlerhvealkarlapyveelrqklaerleelkeslap 143
                     a++l +  a    ++re + r+  al++r+ + +e lr++  ++  +l ++l+p
      KOO22717.1 219 AKALGRLTADSDVKAREAAGRAFWALHSRFPAAAEALRNGFTRSQLALVKRLEP 272
                     222222222222236666666666666666666666666666655555555554 PP

>> DUF4148  Domain of unknown function (DUF4148)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   1.1       1.4   5.2e+03      15      21 ..      24      30 ..      13      67 .. 0.62
   2 ?   12.6   0.5   3.3e-05      0.12       7      45 ..     164     208 ..     133     216 .. 0.76

  Alignments for each domain:
  == domain 1  score: -2.3 bits;  conditional E-value: 1.4
     DUF4148 15 aaaaala 21
                +aaa+++
  KOO22717.1 24 VAAAGTT 30
                2222222 PP

  == domain 2  score: 12.6 bits;  conditional E-value: 3.3e-05
     DUF4148   7 aaalaaavaaaaala.................ahskspkTRAqVraELaqaeaaGy 45 
                 +a+                             +++k+  TR  V + La+a a+G+
  KOO22717.1 164 VAL-----------LvaetvptppllacllhhSSDKHAQTRRAVCDSLAAAIAQGA 208
                 222...........12334555555567777*999********************6 PP

>> HEAT  HEAT repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.4   0.1      0.31   1.1e+03      11      22 ..      68      79 ..      64      86 .. 0.86
   2 ?   -1.4   0.0       1.1     4e+03       1      12 [.      81      91 ..      81     100 .. 0.79
   3 ?    1.1   0.2      0.18   6.4e+02       5      29 ..     105     129 ..     103     131 .. 0.79
   4 ?   -2.3   0.1       2.2   7.8e+03       1      10 [.     142     151 ..     142     157 .. 0.80
   5 ?    9.4   0.3   0.00037       1.3       1      26 [.     177     202 ..     177     205 .. 0.92
   6 ?    3.1   0.1      0.04   1.4e+02       9      27 ..     226     244 ..     219     248 .. 0.81

  Alignments for each domain:
  == domain 1  score: 0.4 bits;  conditional E-value: 0.31
                -SSHHHHHHHHH CS
        HEAT 11 DpspeVReaAak 22
                ++ +e R aA++
  KOO22717.1 68 HEQWEARTAALQ 79
                689999***987 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 1.1
                HHHHHHHHHT-S CS
        HEAT  1 llPlllkllsDp 12
                llPl++++  D+
  KOO22717.1 81 LLPLFQRA-ADE 91
                79999997.454 PP

  == domain 3  score: 1.1 bits;  conditional E-value: 0.18
                 HHHHHT-SSHHHHHHHHHHHHHHHH CS
        HEAT   5 llkllsDpspeVReaAakaLgalae 29 
                 l + l+D  ++V + A+  ++al++
  KOO22717.1 105 LASQLEDLRSSVVRVACDVVTALLK 129
                 5667899889999999999998876 PP

  == domain 4  score: -2.3 bits;  conditional E-value: 2.2
                 HHHHHHHHHT CS
        HEAT   1 llPlllklls 10 
                 llP ll++ +
  KOO22717.1 142 LLPSLLHNAC 151
                 7999998854 PP

  == domain 5  score: 9.4 bits;  conditional E-value: 0.00037
                 HHHHHHHHHT-SSHHHHHHHHHHHHH CS
        HEAT   1 llPlllkllsDpspeVReaAakaLga 26 
                 ll +ll+  sD++++ R+a++ +L+a
  KOO22717.1 177 LLACLLHHSSDKHAQTRRAVCDSLAA 202
                 6889*******************986 PP

  == domain 6  score: 3.1 bits;  conditional E-value: 0.04
                 HT-SSHHHHHHHHHHHHHH CS
        HEAT   9 lsDpspeVReaAakaLgal 27 
                   D++ + ReaA +a+ al
  KOO22717.1 226 TADSDVKAREAAGRAFWAL 244
                 4799999*****9999877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (275 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       650  (0.0362541); expected 358.6 (0.02)
Passed bias filter:                      398  (0.0221987); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.47u 0.26s 00:00:00.73 Elapsed: 00:00:00.41
# Mc/sec: 2001.81
//
Query:       KOO22718.1  [L=325]
Description: ddb1- and cul4-associated factor 7 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.3e-10   41.7   5.5    0.00027   21.7   0.7    4.6  5  WD40         WD domain, G-beta repeat
     0.0065   16.7   0.4          8    6.8   0.0    3.7  5  ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain


Domain annotation for each model (and alignments):
>> WD40  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.0       1.2   1.1e+04      32      38 .]      84      90 ..      76      90 .. 0.68
   2 !    7.1   0.2    0.0012        11      13      38 .]     115     141 ..     105     141 .. 0.83
   3 !   11.2   0.0   6.1e-05      0.55       6      38 .]     150     183 ..     145     183 .. 0.85
   4 !   21.7   0.7     3e-08   0.00027       4      38 .]     241     277 ..     239     277 .. 0.86
   5 ?   -0.9   0.0       0.4   3.6e+03      22      34 ..     309     320 ..     295     322 .. 0.73

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 1.2
                SEEEEEE CS
        WD40 32 gtvriWd 38
                  +r+W+
  KOO22718.1 84 DYLRLWN 90
                4689997 PP

  == domain 2  score: 7.1 bits;  conditional E-value: 0.0012
                 EEEEEEETTSSEEE.EEETTSEEEEEE CS
        WD40  13 vtslafspdgawla.sGsdDgtvriWd 38 
                  ts++++   + ++ ++s D t+ iWd
  KOO22718.1 115 LTSFDWNEQDPNIIgTSSIDTTCIIWD 141
                 6899888888889866689*******9 PP

  == domain 3  score: 11.2 bits;  conditional E-value: 6.1e-05
                 EEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40   6 tltGH.ssvtslafspdgawlasGsdDgtvriWd 38 
                  l +H + v +laf    + +as + Dg+vr++d
  KOO22718.1 150 QLIAHdKEVFDLAFAAGVNVFASVGADGSVRMFD 183
                 4779*888****99999999998777******98 PP

  == domain 4  score: 21.7 bits;  conditional E-value: 3e-08
                 EEEEESS.SSEEEEEEETTSSEEE.EEETTSEEEEEE CS
        WD40   4 lrtltGH.ssvtslafspdgawla.sGsdDgtvriWd 38 
                 + +l+GH ++v++la+ p+++ ++ +++dD+   iWd
  KOO22718.1 241 TAVLDGHsQCVNALAWAPHSSCHIcTAGDDNQALIWD 277
                 57899**777************7636789*******9 PP

  == domain 5  score: -0.9 bits;  conditional E-value: 0.4
                 SSEEEEEETTSEE CS
        WD40  22 gawlasGsdDgtv 34 
                  +w+a +  D+++
  KOO22718.1 309 PDWVAICF-DKKL 320
                 47888888.8776 PP

>> ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.3   0.0     0.023     2e+02      40      88 ..     114     162 ..      75     165 .. 0.76
   2 !    6.8   0.0   0.00089         8      36      69 ..     153     186 ..     138     214 .. 0.78
   3 ?    3.0   0.0     0.014   1.2e+02      37      90 ..     202     257 ..     189     259 .. 0.74
   4 !    4.9   0.1    0.0035        31      35      89 ..     245     304 ..     217     307 .. 0.66
   5 ?   -0.8   0.0      0.21   1.9e+03      38      48 ..     296     306 ..     271     324 .. 0.73

  Alignments for each domain:
  == domain 1  score: 2.3 bits;  conditional E-value: 0.023
  ANAPC4_WD40  40 evrsLaWkpdg.klLavaysdgevrlldaesgkvvhslsvksekavtclg 88 
                    +s+ W++++ +++  +  d+++ + d+++ +   +l +++++ v  l 
   KOO22718.1 114 PLTSFDWNEQDpNIIGTSSIDTTCIIWDISKMQAKTQLIAHDKE-VFDLA 162
                  56889998755388999999*********999999999888874.66655 PP

  == domain 2  score: 6.8 bits;  conditional E-value: 0.00089
  ANAPC4_WD40  36 kedsevrsLaWkpdgklLavaysdgevrlldaes 69 
                  ++d+ev +La+    +++a + +dg+vr++d   
   KOO22718.1 153 AHDKEVFDLAFAAGVNVFASVGADGSVRMFDLRA 186
                  6899*************************99754 PP

  == domain 3  score: 3.0 bits;  conditional E-value: 0.014
  ANAPC4_WD40  37 edsevrsLaWkp.dgklLavaysdg.evrlldaesgkvvhslsvksekavtclgWg 90 
                   +s    LaW++ d + La  + d+ +v +ld+    +  ++  +++++v+ l W+
   KOO22718.1 202 GSSPLIRLAWNKqDPNYLATLTMDShKVIILDIRVPSLPTAVLDGHSQCVNALAWA 257
                  45566689996515689999888876789999988888888877777788888886 PP

  == domain 4  score: 4.9 bits;  conditional E-value: 0.0035
  ANAPC4_WD40  35 dkedsevrsLaWkpdgkl.Lavaysdgevrlldaes...gkvvhsl.svksekavtclgW 89 
                  d++++ v++LaW p  +  ++ a +d++  + d +s   + +   +  + +e++v+ l+W
   KOO22718.1 245 DGHSQCVNALAWAPHSSChICTAGDDNQALIWDLSSleqESITDPIlAYYAESEVNQLQW 304
                  678899*******98875489999999988877654110333333212333345666666 PP

  == domain 5  score: -0.8 bits;  conditional E-value: 0.21
  ANAPC4_WD40  38 dsevrsLaWkp 48 
                  +sev++L+W+ 
   KOO22718.1 296 ESEVNQLQWSR 306
                  67888888875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (325 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       478  (0.0266607); expected 358.6 (0.02)
Passed bias filter:                      425  (0.0237046); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.46u 0.22s 00:00:00.68 Elapsed: 00:00:00.37
# Mc/sec: 2612.99
//
Query:       KOO22719.1  [L=378]
Description: hypothetical protein Ctob_008304 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (378 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       318  (0.0177366); expected 358.6 (0.02)
Passed bias filter:                      294  (0.016398); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.47u 0.23s 00:00:00.70 Elapsed: 00:00:00.40
# Mc/sec: 2823.72
//
Query:       KOO22720.1  [L=281]
Description: alpha beta-hydrolase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    9.9e-25   87.1   0.0    1.4e-24   86.5   0.0    1.2  1  Lipase_3    Lipase (class 3)
  ------ inclusion threshold ------
        2.7    8.0  10.1       0.68    9.9   5.9    2.1  2  Defensin_2  Arthropod defensin


Domain annotation for each model (and alignments):
>> Lipase_3  Lipase (class 3)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   86.5   0.0   1.6e-28   1.4e-24       1     140 [.      37     198 ..      37     200 .. 0.94

  Alignments for each domain:
  == domain 1  score: 86.5 bits;  conditional E-value: 1.6e-28
                 EEEE----------------EEE-HHHH-G.......TT-EEEHHHHHHHHS-HHHHHHHHHHHHHHHTT..-EEEEEEEETHHHHHHHHHHHHHHHTT CS
    Lipase_3   1 vvafRGtesakdwltdldfslteakellek.......eggkvhsgfleayeeslreqvlkelkrllekyp..eysivvtGHSLGgalAlLaaldlveng 90 
                 vv fRG+++  + ++d+ f l + k+l           ++ vh+gf  ay+ s+r+ +++ + r l++     +++++tGHSLG+a+ +Laa+d+++++
  KOO22720.1  37 VVGFRGSSNLANDVEDAAFLLLPPKHLAGVppagpgqPEVLVHTGFDFAYG-SVRNVTQDAVTRALDSCGgaCTEVTFTGHSLGSAMTTLAAVDFQAQQ 134
                 789***********************866599*****9*************.************9999995559************************* PP

                 -SS.............---EEEEEES----B-HHHHHHHHT-TTE.EEEEEEETT--GGG-S-S CS
    Lipase_3  91 ene.............kkkvtvvtfGqPrvgnkefaklvdsqlnk.kvlrvvntnDivPrlppl 140
                 +++             +   +++tfG+Prvgn++fa + +  l    + rv+ ++D+vPr+pp 
  KOO22720.1 135 QRRqlqaaggggaaarAVVSNLFTFGSPRVGNEAFAAWASGLLDMgLSSRVTREGDVVPRIPPK 198
                 9999*********98777889*******************988888899*************96 PP

>> Defensin_2  Arthropod defensin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.1       0.2   1.8e+03      20      26 ..     103     109 ..      99     112 .. 0.79
   2 ?    9.9   5.9   7.6e-05      0.68       7      25 ..     263     281 .]     259     281 .] 0.91

  Alignments for each domain:
  == domain 1  score: -1.0 bits;  conditional E-value: 0.2
                 CSEEEEE CS
  Defensin_2  20 rrGGyCn 26 
                  +GG C+
  KOO22720.1 103 SCGGACT 109
                 5899997 PP

  == domain 2  score: 9.9 bits;  conditional E-value: 7.6e-05
                 STHHHHHHHHHHTCSEEEE CS
  Defensin_2   7 nhsaCaaHCllkGrrGGyC 25 
                  h  C  HC  +G  GG+C
  KOO22720.1 263 GHEGCGQHCNYLGMLGGHC 281
                 6899*************** PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (281 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       406  (0.0226449); expected 358.6 (0.02)
Passed bias filter:                      315  (0.0175693); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.43u 0.24s 00:00:00.67 Elapsed: 00:00:00.41
# Mc/sec: 2062.25
//
Query:       KOO22721.1  [L=319]
Description: hypothetical protein Ctob_008296 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.11   12.8   0.0       0.21   11.8   0.0    1.4  1  TrkA_N    TrkA-N domain


Domain annotation for each model (and alignments):
>> TrkA_N  TrkA-N domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   1.2e-05      0.21      50     106 ..      22      79 ..       3      84 .. 0.88

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 1.2e-05
                 TSHHHHHHTTGGGESEEEE-SSSHHHHHHHHHHHHHHTSS.SEEEEEESSGGGHHHHH CS
      TrkA_N  50 tdeevLeeagiekadaviaatgddeanilavllakelnpk.kkiiaraqdpehaellk 106
                 ++  +  ++g+++ad+v+ + g + a   a++ a+el ++  +++a++ ++e+ ++l+
  KOO22721.1  22 SNYMLTLRMGVKHADSVVRTFGAHPAAKKAAAEARELLSEgGRVVAEVATAEDLQKLE 79 
                 555666789*************************99999989***********99997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (319 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1017  (0.0567237); expected 358.6 (0.02)
Passed bias filter:                      415  (0.0231469); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.27s 00:00:00.70 Elapsed: 00:00:00.40
# Mc/sec: 2399.09
//
Query:       KOO22722.1  [L=221]
Description: hypothetical protein Ctob_008295 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.1e-11   43.2   3.5    2.6e-06   27.8   0.2    2.1  3  EF-hand_7  EF-hand domain pair
    1.3e-07   30.9   0.3     0.0089   15.9   0.1    2.5  2  EF-hand_6  EF-hand domain
    2.4e-07   29.8   2.5     0.0021   17.5   0.2    2.4  2  EF-hand_1  EF hand
    1.8e-05   24.0   5.4      0.026   14.0   0.3    2.4  2  EF-hand_5  EF hand
  ------ inclusion threshold ------
      0.013   15.3   0.9        3.5    7.5   0.3    2.3  2  EF-hand_8  EF-hand domain pair


Domain annotation for each model (and alignments):
>> EF-hand_7  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.0   2.1e-06    0.0076      42      69 ..      99     126 ..      76     128 .. 0.83
   2 !   27.8   0.2   7.2e-10   2.6e-06       2      70 ..     101     169 ..     100     170 .. 0.79
   3 !   11.8   0.0   7.1e-05      0.25      10      35 ..     151     177 ..     143     208 .. 0.65

  Alignments for each domain:
  == domain 1  score: 16.7 bits;  conditional E-value: 2.1e-06
   EF-hand_7  42 sdeelellfkefDtdkdGvisfdEFlkl 69 
                  +e+l +lf ++D ++dG + +d+F+ +
  KOO22722.1  99 AKEQLGALFGMMDANGDGFLRLDDFEII 126
                 5688999******************876 PP

  == domain 2  score: 27.8 bits;  conditional E-value: 7.2e-10
   EF-hand_7   2 eklkeaFkelDtdgdgyldkeellrllrkifqgagegsklsdee.......lellfkefDtdkdGvisfdEFlkly 70 
                 e+l   F ++D +gdg+l+ ++++ ++       ++ s l++ +         +l +e+D ++dG+i  dEF + +
  KOO22722.1 101 EQLGALFGMMDANGDGFLRLDDFE-IIA------SRSSTLPQAAkhkalqyFTKLQEELDFNSDGKIEPDEFIRGM 169
                 788899******************.777......7777766622334433366777778*************9766 PP

  == domain 3  score: 11.8 bits;  conditional E-value: 7.1e-05
   EF-hand_7  10 elDtdgdgyldkeellr.llrkifqga 35 
                 elD + dg+++++e+ r ++++ +q+ 
  KOO22722.1 151 ELDFNSDGKIEPDEFIRgMIKIAYQKP 177
                 699999999999995553555544443 PP

>> EF-hand_6  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.1   2.5e-06    0.0089       3      25 ..     104     126 ..     102     133 .. 0.87
   2 !   12.6   0.0   2.7e-05     0.098       8      27 ..     151     170 ..     150     177 .. 0.88

  Alignments for each domain:
  == domain 1  score: 15.9 bits;  conditional E-value: 2.5e-06
   EF-hand_6   3 reaFklfDkdgdGkidaeElrka 25 
                  ++F ++D +gdG++  +++  +
  KOO22722.1 104 GALFGMMDANGDGFLRLDDFEII 126
                 579*****************876 PP

  == domain 2  score: 12.6 bits;  conditional E-value: 2.7e-05
   EF-hand_6   8 lfDkdgdGkidaeElrkalr 27 
                 ++D++ dGki ++E+++ + 
  KOO22722.1 151 ELDFNSDGKIEPDEFIRGMI 170
                 68*************99775 PP

>> EF-hand_1  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.1   0.2     3e-05      0.11       4      23 ..     105     124 ..     102     129 .. 0.86
   2 !   17.5   0.2   5.9e-07    0.0021       8      28 ..     151     171 ..     150     172 .. 0.91

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 3e-05
                 HHHHHHTTTSSSEEEHHHHH CS
   EF-hand_1   4 eiFrefDkDgdGkIdfeEfk 23 
                  +F ++D +gdG++ +++f 
  KOO22722.1 105 ALFGMMDANGDGFLRLDDFE 124
                 6799**********999996 PP

  == domain 2  score: 17.5 bits;  conditional E-value: 5.9e-07
                 HHTTTSSSEEEHHHHHHHHHH CS
   EF-hand_1   8 efDkDgdGkIdfeEfkellkk 28 
                 e+D + dGkI+ +Ef++ + k
  KOO22722.1 151 ELDFNSDGKIEPDEFIRGMIK 171
                 89***************9976 PP

>> EF-hand_5  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.1   0.8     3e-05      0.11       1      16 [.     103     118 ..     103     124 .. 0.88
   2 !   14.0   0.3   7.3e-06     0.026       7      23 ..     151     167 ..     150     170 .. 0.87

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 3e-05
                 HHHHHHHH-SS-SSCE CS
   EF-hand_5   1 lkdtFqaiDlNgDGkI 16 
                 l ++F ++D+NgDG++
  KOO22722.1 103 LGALFGMMDANGDGFL 118
                 5689**********86 PP

  == domain 2  score: 14.0 bits;  conditional E-value: 7.3e-06
                 HH-SS-SSCE-HHHHHH CS
   EF-hand_5   7 aiDlNgDGkIskeELkt 23 
                 ++D N DGkI ++E+ +
  KOO22722.1 151 ELDFNSDGKIEPDEFIR 167
                 689************76 PP

>> EF-hand_8  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.5   0.3   0.00098       3.5      18      48 ..      94     123 ..      86     123 .. 0.80
   2 ?    6.0   0.0    0.0029        10      34      50 ..     151     167 ..     150     177 .. 0.77

  Alignments for each domain:
  == domain 1  score: 7.5 bits;  conditional E-value: 0.00098
   EF-hand_8  18 glkkglseeevdilfrefDtdgdGkisfeEF 48 
                 +l  +  +e++ +lf  +D +gdG + +++F
  KOO22722.1  94 QLD-DAAKEQLGALFGMMDANGDGFLRLDDF 123
                 444.3778889999***************99 PP

  == domain 2  score: 6.0 bits;  conditional E-value: 0.0029
   EF-hand_8  34 efDtdgdGkisfeEFcv 50 
                 e+D++ dGki  +EF+ 
  KOO22722.1 151 ELDFNSDGKIEPDEFIR 167
                 57888888888888875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (221 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       406  (0.0226449); expected 358.6 (0.02)
Passed bias filter:                      307  (0.0171231); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.42u 0.25s 00:00:00.67 Elapsed: 00:00:00.40
# Mc/sec: 1644.47
//
Query:       KOO22723.1  [L=499]
Description: hypothetical protein Ctob_008299, partial [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.1e-51  173.4   0.0    4.3e-51  172.9   0.0    1.2  1  PCIF1_WW  Phosphorylated CTD interacting factor 1 WW domain


Domain annotation for each model (and alignments):
>> PCIF1_WW  Phosphorylated CTD interacting factor 1 WW domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  172.9   0.0   2.4e-55   4.3e-51       1     172 []     245     422 ..     245     422 .. 0.97

  Alignments for each domain:
  == domain 1  score: 172.9 bits;  conditional E-value: 2.4e-55
    PCIF1_WW   1 kLkeLye..sseeddekleaflsrvfalllrYdallg....eaglqaalpeevfevLkkefgvsfecfAsPlncyfeqycsafpdtDayFGsvGsffdf 93 
                 kL++L++  ++++ + ++++f +++fa+l r +al+g    + g+qaa+p  +f+vL+  fgv++e fAsPln++f ++csa +d+Da+FGs+Gsff++
  KOO22723.1 245 KLRALWQltQTSAAAASDTHFFEAAFAVLARLQALQGgheqAGGMQAACPPPAFDVLRADFGVTMELFASPLNSRFPRFCSAAADVDAPFGSLGSFFHC 343
                 7999999877777888999******************9998899******************************************************* PP

    PCIF1_WW  94 kpasgsfeanPPfveevleraaehieklLeaaeeesepLsfvvvvpewretealkkleesrykrkevvieakeheyreg 172
                 +  sg+f anPPf +++++++a+h+e+lL+aa+ +  +L+ vv+vp+wre   +++l +s++++ ++ +e+ +h y++g
  KOO22723.1 344 SRLSGAFVANPPFESQTVHAMAQHMEALLSAADAAAGALTIVVIVPAWRELPGWQALANSPHRSCTLNLERAKHCYVDG 422
                 ****************************************************************************997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (499 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       539  (0.030063); expected 358.6 (0.02)
Passed bias filter:                      337  (0.0187964); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.52u 0.19s 00:00:00.71 Elapsed: 00:00:00.37
# Mc/sec: 4002.44
//
Query:       KOO22724.1  [L=307]
Description: camp-dependent protein kinase catalytic subunit alpha-like protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    2.8e-32  112.1   0.0    3.7e-32  111.7   0.0    1.1  1  Pkinase      Protein kinase domain
    1.7e-14   53.7   0.0    2.2e-14   53.4   0.0    1.1  1  Pkinase_Tyr  Protein tyrosine kinase
  ------ inclusion threshold ------
      0.046   13.0   0.0      0.069   12.5   0.0    1.3  1  Kinase-like  Kinase-like


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  111.7   0.0   6.1e-36   3.7e-32      75     254 ..       1     172 [.       1     178 [. 0.92

  Alignments for each domain:
  == domain 1  score: 111.7 bits;  conditional E-value: 6.1e-36
                 EEEE--TTEBHHHHHHHHSS--HHHHHHHHHHHHHHHHHHHHTT....EE-SS-SGGGEEEETTTEEEE-SGTTSEESSSSCS.BCTTTSCGGGS-HHH CS
     Pkinase  75 lvleyveggeladllerkgslseeeakkiakqilegleylHskg....iiHrDlKpeNiLidekgelKitDFGlakelesssk.ltsfvgtseYlAPEv 168
                 ++ e+++gg+l+++l++ g +++++a+++a q++ +l +lH+++    i+HrD+ pe +L+d+ g +K++ F  +k+l+ +++ + + +gt+eY APE+
  KOO22724.1   1 MLYEFAHGGTLFTHLRAAGRFEPDRARFYAVQLALALGHLHERCgaapIVHRDVRPESVLLDRLGFVKLSSFIYVKQLDADHPhTWTLCGTPEYSAPEM 99 
                 678**************************************9988999*******************************999889************** PP

                 HTTSCBSHHHHHHHHHHHHHHHHHSS-STTTSSHHHHHHHHHHTHHHHHHHCTSHH...HHHTTS-HHHHHHHHHHT-SSGCCSTT CS
     Pkinase 169 lkeneyskkvDvWslGvilyelltgkppfsgekgkekvekeldqlekilkilgetkeklpeaseiseeakdllkkllkkdpkkRlt 254
                 l e++++++vD+W+ Gv+++ell+g ppf +e+   + ++ +               ++  +++++++a+ ll+ ll+  p++Rl+
  KOO22724.1 100 LLESGHDRAVDWWAFGVTVFELLAGFPPFCAESPLATSAAVIAG-------------HFTMPRHFDPDARALLRGLLQPMPRQRLG 172
                 ******************************65555544444444.............6888999********************96 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.4   0.0   3.6e-18   2.2e-14      78     246 ..       1     167 [.       1     172 [. 0.82

  Alignments for each domain:
  == domain 1  score: 53.4 bits;  conditional E-value: 3.6e-18
                  EEEE--TTEBHHHHHHHTCTTTSBHHHHHHHHHHHHHHHHHHHHTT....EEEST-SGGGEEEEETTEEEE-STTTHEETTTSSEEEETTSSTSGGGG CS
  Pkinase_Tyr  78 ivteyvkgGdLlkfLrkkekekltlkdllsfalqvAkGmeyLeskk....lvHrdlaarNvLlsenkvvkisDfGLardiekddeyvkkeeaklpvkW 171
                  ++ e+++gG+L ++Lr+    +++ ++   +a+q+A ++ +L+++     +vHrd++   vLl++  +vk+s f   +++  d +  ++ +     ++
   KOO22724.1   1 MLYEFAHGGTLFTHLRAA--GRFEPDRARFYAVQLALALGHLHERCgaapIVHRDVRPESVLLDRLGFVKLSSFIYVKQL--DADHPHTWTLCGTPEY 94 
                  5689*************8..99*********************9854555*****************************9..555555666677789* PP

                  S-HHHHHHSEEEHHHHHHHHHHHHHHHHTTSSGTTTTSHHHHHHHHHHTTEES-BBTTSBHHHHHHHHHHT-SSG CS
  Pkinase_Tyr 172 mapEslkekkftsksDvWsfGvllwEiftlgespypglkneevleklkegkrlekpekcpeelyelmkkcweedp 246
                   apE+l e+    + D W+fGv+++E++  g  p+   ++  + +++ +g+  ++p++  ++   l++  ++  p
   KOO22724.1  95 SAPEMLLESGHDRAVDWWAFGVTVFELLA-GFPPFCAESPLATSAAVIAGH-FTMPRHFDPDARALLRGLLQPMP 167
                  ****************************9.999988877777666666554.44555566666666555555555 PP

>> Kinase-like  Kinase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   1.2e-05     0.069     163     288 .]      47     170 ..      17     170 .. 0.78

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 1.2e-05
  Kinase-like 163 kglvhgkftvdnllldekgglmlggftaLvragtkvvlsevekgfaPpEllgsrggytrknktkmthkldaWqlGlviyriwclklPltlateeakee 260
                    +vh +++++++lld+ g ++l  f    +  +  +   +      pE  +  +      +     ++d W+ G++++ + +   P+    ++a ++
   KOO22724.1  47 APIVHRDVRPESVLLDRLGFVKLSSFIYVKQLDADHPH--TWTLCGTPEYSAPEML----LESGHDRAVDWWAFGVTVFELLAGFPPFCAESPLATSA 138
                  569***********************999999999984..3333334555555444....223334589************98888888888877777 PP

  Kinase-like 261 w....kfklckkipekvkaLlkkfLqlsqedR 288
                       +f   ++     +aLl+++Lq+  ++R
   KOO22724.1 139 AviagHFTMPRHFDPDARALLRGLLQPMPRQR 170
                  66666799999999999*********988877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (307 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       278  (0.0155056); expected 358.6 (0.02)
Passed bias filter:                      222  (0.0123822); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.45u 0.26s 00:00:00.71 Elapsed: 00:00:00.43
# Mc/sec: 2149.12
//
Query:       KOO22725.1  [L=607]
Description: hypothetical protein Ctob_008303 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      0.006   16.1   0.2      0.085   12.4   0.0    2.4  2  EF-hand_1  EF hand


Domain annotation for each model (and alignments):
>> EF-hand_1  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.9   0.1     0.023   4.2e+02       1      11 [.     140     150 ..     140     151 .. 0.91
   2 !   12.4   0.0   4.8e-06     0.085       1      21 [.     168     188 ..     168     188 .. 0.95

  Alignments for each domain:
  == domain 1  score: 0.9 bits;  conditional E-value: 0.023
                 HHHHHHHHHTT CS
   EF-hand_1   1 elkeiFrefDk 11 
                 el+++++e+D+
  KOO22725.1 140 ELEKMMEEADT 150
                 799*******7 PP

  == domain 2  score: 12.4 bits;  conditional E-value: 4.8e-06
                 HHHHHHHHHTTTSSSEEEHHH CS
   EF-hand_1   1 elkeiFrefDkDgdGkIdfeE 21 
                 el+++++e+  Dg+G++df E
  KOO22725.1 168 ELEKMMQEANPDGSGHVDFGE 188
                 799****************87 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (607 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       860  (0.047967); expected 358.6 (0.02)
Passed bias filter:                      531  (0.0296168); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.60u 0.26s 00:00:00.86 Elapsed: 00:00:00.43
# Mc/sec: 4268.73
//
Query:       KOO22726.1  [L=254]
Description: serine threonine protein kinase with tpr repeat [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    8.3e-11   41.9   4.3      9e-06   25.8   0.2    2.5  2  TPR_9       Tetratricopeptide repeat
    1.2e-06   28.1   6.2     0.0017   18.1   0.1    3.6  4  TPR_1       Tetratricopeptide repeat
    3.6e-05   23.5  15.4     0.0045   17.0   0.1    3.9  3  TPR_2       Tetratricopeptide repeat
    0.00057   19.9   0.0        1.2    9.3   0.0    2.6  2  Fis1_TPR_C  Fis1 C-terminal tetratricopeptide repeat
     0.0015   18.2   1.9       0.16   11.6   0.1    2.5  2  TPR_11      TPR repeat
     0.0064   16.8   2.8          2    9.0   0.3    2.9  2  TPR_17      Tetratricopeptide repeat
  ------ inclusion threshold ------
      0.025   14.9   1.7      0.061   13.6   1.7    1.6  1  TPR_12      Tetratricopeptide repeat
       0.11   12.9   5.1        1.6    9.2   0.1    2.8  3  BTAD        Bacterial transcriptional activator domain
       0.18   11.8   1.0       0.37   10.9   1.0    1.5  1  ENOD40      ENOD40 protein
       0.48   10.8   8.2        2.4    8.6   0.0    3.7  3  TPR_8       Tetratricopeptide repeat
        3.2    8.8   9.6        6.9    7.8   0.0    3.7  4  TPR_14      Tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> TPR_9  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   0.6   2.6e-06    0.0042      12      58 ..      63     109 ..      56     114 .. 0.90
   2 !   25.8   0.2   5.5e-09     9e-06      25      65 ..     115     155 ..     110     162 .. 0.91

  Alignments for each domain:
  == domain 1  score: 17.2 bits;  conditional E-value: 2.6e-06
       TPR_9  12 eralavverllllaPddpeerrdRGlllaqlGclsaAladLeaylal 58 
                  +a + +++ lll+P     ++ R+l++a+   ++ Alad  +yl l
  KOO22726.1  63 REAKQSIDSALLLDPANEKFYYTRALIYARTAEWRWALADYTQYLNL 109
                 5677889*************************************976 PP

  == domain 2  score: 25.8 bits;  conditional E-value: 5.5e-09
       TPR_9  25 aPddpeerrdRGlllaqlGclsaAladLeaylalapdapda 65 
                  P+ +  ++ R+l+la+lG+  +Al+dL++++ + p ++++
  KOO22726.1 115 GPQLANAYYSRALCLAKLGHRLQALRDLDRCIKVGPTDEQV 155
                 6889999*****************************99886 PP

>> TPR_1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.0       4.3     7e+03      14      19 ..      12      17 ..       8      17 .. 0.83
   2 ?    3.9   0.0     0.031        50      15      34 .]      60      79 ..      58      79 .. 0.91
   3 !    6.7   1.2     0.004       6.6       2      28 ..      81     107 ..      80     109 .. 0.90
   4 !   18.1   0.1   1.1e-06    0.0017       1      34 []     119     152 ..     119     152 .. 0.95

  Alignments for each domain:
  == domain 1  score: -2.8 bits;  conditional E-value: 4.3
                TT-HHH CS
       TPR_1 14 lgkyde 19
                lg+yd+
  KOO22726.1 12 LGQYDK 17
                89**97 PP

  == domain 2  score: 3.9 bits;  conditional E-value: 0.031
                T-HHHHHHHHHHHHHHSTTH CS
       TPR_1 15 gkydeAleyyekALelnPnn 34
                g++ eA +  + AL l+P n
  KOO22726.1 60 GELREAKQSIDSALLLDPAN 79
                899***************65 PP

  == domain 3  score: 6.7 bits;  conditional E-value: 0.004
                 HHHHHHHHHHHHTT-HHHHHHHHHHHH CS
       TPR_1   2 kalynlGnayfklgkydeAleyyekAL 28 
                 k +y ++++y +  ++  Al++y + L
  KOO22726.1  81 KFYYTRALIYARTAEWRWALADYTQYL 107
                 579********************9865 PP

  == domain 4  score: 18.1 bits;  conditional E-value: 1.1e-06
                 HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH CS
       TPR_1   1 akalynlGnayfklgkydeAleyyekALelnPnn 34 
                 a+a+y +++++ klg   +Al + ++++++ P++
  KOO22726.1 119 ANAYYSRALCLAKLGHRLQALRDLDRCIKVGPTD 152
                 79***************************98875 PP

>> TPR_2  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.0   0.0     0.009        15      14      34 .]      59      79 ..      56      79 .. 0.92
   2 !    9.7   1.4    0.0006      0.98       3      30 ..      82     109 ..      80     111 .. 0.92
   3 !   17.0   0.1   2.7e-06    0.0045       1      34 []     119     152 ..     119     152 .. 0.95

  Alignments for each domain:
  == domain 1  score: 6.0 bits;  conditional E-value: 0.009
       TPR_2 14 lgdyeeAleafekAleldPnn 34
                +g++ eA++  + Al ldP n
  KOO22726.1 59 RGELREAKQSIDSALLLDPAN 79
                6999***************86 PP

  == domain 2  score: 9.7 bits;  conditional E-value: 0.0006
       TPR_2   3 alynlGlayyklgdyeeAleafekAlel 30 
                  +y ++l+y++  ++  Al+++ + l l
  KOO22726.1  82 FYYTRALIYARTAEWRWALADYTQYLNL 109
                 79*********************99877 PP

  == domain 3  score: 17.0 bits;  conditional E-value: 2.7e-06
       TPR_2   1 aealynlGlayyklgdyeeAleafekAleldPnn 34 
                 a a+y ++l+++klg+  +Al++++++++  P++
  KOO22726.1 119 ANAYYSRALCLAKLGHRLQALRDLDRCIKVGPTD 152
                 689**************************99986 PP

>> Fis1_TPR_C  Fis1 C-terminal tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.3   0.0   0.00071       1.2       2      35 ..      47      80 ..      46      83 .. 0.91
   2 !    7.8   0.0    0.0021       3.4       5      38 ..     123     156 ..     120     157 .. 0.90

  Alignments for each domain:
  == domain 1  score: 9.3 bits;  conditional E-value: 0.00071
                HHHHHHHHHHHHHT-HHHHHHHHHHHHHHTTS-H CS
  Fis1_TPR_C  2 eclYylAlGhyklgeYseArryvdalLeiEPenr 35
                e l+  + G++  ge +eA++ +d  L ++P n+
  KOO22726.1 47 ESLFAATWGSIGRGELREAKQSIDSALLLDPANE 80
                6688888999999*******************97 PP

  == domain 2  score: 7.8 bits;  conditional E-value: 0.0021
                 HHHHHHHHHHT-HHHHHHHHHHHHHHTTS-HHHH CS
  Fis1_TPR_C   5 YylAlGhyklgeYseArryvdalLeiEPenrQaq 38 
                 Y  Al  +klg   +A+r +d+++++ P  +Q+ 
  KOO22726.1 123 YSRALCLAKLGHRLQALRDLDRCIKVGPTDEQVT 156
                 77899999************************86 PP

>> TPR_11  TPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.6   0.1    0.0001      0.16       7      40 ..      59      92 ..      58      93 .. 0.87
   2 !    5.6   0.3    0.0075        12      25      42 .]     116     133 ..      99     133 .. 0.92

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 0.0001
      TPR_11  7 qGkyeeAieaYkkAlkldPdnaeayynLGlayyk 40
                +G++ eA ++   Al ldP n  +yy ++l+y++
  KOO22726.1 59 RGELREAKQSIDSALLLDPANEKFYYTRALIYAR 92
                57777777777889******************87 PP

  == domain 2  score: 5.6 bits;  conditional E-value: 0.0075
      TPR_11  25 PdnaeayynLGlayykqG 42 
                 P+ a+ayy ++l ++k+G
  KOO22726.1 116 PQLANAYYSRALCLAKLG 133
                 899*********999998 PP

>> TPR_17  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.0   0.2    0.0054       8.9       5      27 ..      72      94 ..      70     101 .. 0.84
   2 !    9.0   0.3    0.0012         2      10      28 ..     116     134 ..     106     147 .. 0.83

  Alignments for each domain:
  == domain 1  score: 7.0 bits;  conditional E-value: 0.0054
      TPR_17  5 aleldPnnadaynnLAelllknG 27
                al ldP n ++y+ +A ++++  
  KOO22726.1 72 ALLLDPANEKFYYTRALIYARTA 94
                7889***************9765 PP

  == domain 2  score: 9.0 bits;  conditional E-value: 0.0012
      TPR_17  10 PnnadaynnLAelllknGd 28 
                 P  a+ay+ +A +l+k+G 
  KOO22726.1 116 PQLANAYYSRALCLAKLGH 134
                 889************9994 PP

>> TPR_12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   1.7   3.8e-05     0.061       6      73 ..      83     147 ..      80     150 .. 0.91

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 3.8e-05
      TPR_12   6 lnnlaavlrrlgrydeAlellekaleiarrllGpdhpltattlrnLgrlyralgryeeAlelleeala 73 
                 ++ +a++++r  ++  Al+ + + l++ + + Gp+   +a++++  + ++ +lg+  +Al+ l ++++
  KOO22726.1  83 YYTRALIYARTAEWRWALADYTQYLNLTQIVAGPQ---LANAYYSRALCLAKLGHRLQALRDLDRCIK 147
                 567899**********************9997764...9*********************99999876 PP

>> BTAD  Bacterial transcriptional activator domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.2   0.1   0.00096       1.6      74     122 ..      58     106 ..      38     111 .. 0.89
   2 ?    5.1   0.0     0.018        29      64      98 ..     121     155 ..     115     158 .. 0.82
   3 ?   -1.6   0.6         2   3.3e+03      10      23 ..     186     199 ..     169     211 .. 0.54

  Alignments for each domain:
  == domain 1  score: 9.2 bits;  conditional E-value: 0.00096
                 HTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHH CS
        BTAD  74 rlGraeealaelealvaehPlrErlhrqlmrAlarsGrqaeALevYerl 122
                   G+ +ea +  ++++ ++P +E+++    + +ar+ +   AL+ Y ++
  KOO22726.1  58 GRGELREAKQSIDSALLLDPANEKFYYTRALIYARTAEWRWALADYTQY 106
                 4688999***************************************987 PP

  == domain 2  score: 5.1 bits;  conditional E-value: 0.018
                 HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHH CS
        BTAD  64 alealaeaelrlGraeealaelealvaehPlrErl 98 
                 a+ ++a  +++lG++ +al++l++ ++  P++E+ 
  KOO22726.1 121 AYYSRALCLAKLGHRLQALRDLDRCIKVGPTDEQV 155
                 56667777889999999999999999999999986 PP

  == domain 3  score: -1.6 bits;  conditional E-value: 2
                 HHHHHHHHHTT-HH CS
        BTAD  10 vaagraalaagdpe 23 
                 ++a+++a+aa +++
  KOO22726.1 186 KEAADEAAAAKRKQ 199
                 33333333333333 PP

>> ENOD40  ENOD40 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   1.0   0.00023      0.37       4      11 ..     222     229 ..     221     229 .. 0.98

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00023
      ENOD40   4 CWqkSIHG 11 
                 CWq  IHG
  KOO22726.1 222 CWQVAIHG 229
                 *******9 PP

>> TPR_8  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.0   0.0      0.02        33      15      34 .]      60      79 ..      57      79 .. 0.91
   2 ?    0.1   0.2      0.79   1.3e+03       2      13 ..      81      92 ..      80     109 .. 0.82
   3 ?    8.6   0.0    0.0015       2.4       1      30 [.     119     148 ..     119     152 .. 0.92

  Alignments for each domain:
  == domain 1  score: 5.0 bits;  conditional E-value: 0.02
                T-HHHHHHHHHHHHHHHHH. CS
       TPR_8 15 gdyeeAkeyyekaleldpdn 34
                g++ eAk+++  al ldp+n
  KOO22726.1 60 GELREAKQSIDSALLLDPAN 79
                8899**************86 PP

  == domain 2  score: 0.1 bits;  conditional E-value: 0.79
                CHHHHHHHHHHH CS
       TPR_8  2 eayynlgsiylk 13
                + yy  ++iy  
  KOO22726.1 81 KFYYTRALIYAR 92
                579999999965 PP

  == domain 3  score: 8.6 bits;  conditional E-value: 0.0015
                 CCHHHHHHHHHHHTT-HHHHHHHHHHHHHH CS
       TPR_8   1 aeayynlgsiylklgdyeeAkeyyekalel 30 
                 a ayy  ++++ klg   +A   + ++++ 
  KOO22726.1 119 ANAYYSRALCLAKLGHRLQALRDLDRCIKV 148
                 679*************************96 PP

>> TPR_14  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.0   0.1     0.032        52      14      39 ..      59      84 ..      51      91 .. 0.88
   2 ?   -0.4   0.1       1.8   2.9e+03       4      24 ..      83     103 ..      80     109 .. 0.69
   3 ?    7.8   0.0    0.0043       6.9       2      37 ..     120     155 ..     119     158 .. 0.92
   4 ?   -1.0   1.1       2.7   4.4e+03      10      29 ..     171     190 ..     167     206 .. 0.57

  Alignments for each domain:
  == domain 1  score: 5.0 bits;  conditional E-value: 0.032
      TPR_14 14 lGdpdeAiallrralalaPddaeawl 39
                +G+++eA +  + al l+P+++ +++
  KOO22726.1 59 RGELREAKQSIDSALLLDPANEKFYY 84
                79******************998774 PP

  == domain 2  score: -0.4 bits;  conditional E-value: 1.8
      TPR_14   4 llalaeallalGdpdeAiall 24 
                 ++ +a ++++  +++ A+a +
  KOO22726.1  83 YYTRALIYARTAEWRWALADY 103
                 677888888888777766654 PP

  == domain 3  score: 7.8 bits;  conditional E-value: 0.0043
      TPR_14   2 eallalaeallalGdpdeAiallrralalaPddaea 37 
                 +a++ +a  l+ lG   +A++ l+r+++ +P+d+++
  KOO22726.1 120 NAYYSRALCLAKLGHRLQALRDLDRCIKVGPTDEQV 155
                 799999999***********************9876 PP

  == domain 4  score: -1.0 bits;  conditional E-value: 2.7
      TPR_14  10 allalGdpdeAiallrrala 29 
                 + + + dp+  ++++++a +
  KOO22726.1 171 YAMISADPEMGLQAAKEAAD 190
                 45555555555555555533 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (254 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       578  (0.0322383); expected 358.6 (0.02)
Passed bias filter:                      367  (0.0204696); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.44u 0.27s 00:00:00.71 Elapsed: 00:00:00.42
# Mc/sec: 1828.75
//
Query:       KOO22727.1  [L=175]
Description: ccaat-binding transcription factor (cbf-b nf-ya) family protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.8e-16   59.8   5.5    5.1e-16   59.0   5.5    1.4  1  CBFB_NFYA  CCAAT-binding transcription factor (CBF-B/NF-YA) s


Domain annotation for each model (and alignments):
>> CBFB_NFYA  CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.0   5.5   2.8e-20   5.1e-16       3      56 .]      30      82 ..      28      82 .. 0.90

  Alignments for each domain:
  == domain 1  score: 59.0 bits;  conditional E-value: 2.8e-20
   CBFB_NFYA  3 lyVNakQynrIlkRReaRakleaelkl.rkarkkylheSRhkhAmrRpRgpgGRF 56
                +yVN+ Qy +I +RR  Ra+  + ++  +k+  +y+heSRh+ Am+R Rg++GRF
  KOO22727.1 30 RYVNPAQYAAICQRRLVRAAEREANAPlHKN--RYKHESRHELAMKRVRGKNGRF 82
                6******************987776665666..6********************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (175 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       325  (0.0181271); expected 358.6 (0.02)
Passed bias filter:                      254  (0.014167); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.27s 00:00:00.65 Elapsed: 00:00:00.42
# Mc/sec: 1249.56
//
Query:       KOO22728.1  [L=590]
Description: hypothetical protein Ctob_011625 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
  ------ inclusion threshold ------
       0.33   10.6  20.2        2.2    8.0   3.4    5.0  4  DUF4201       Domain of unknown function (DUF4201)
        2.9    7.7  21.2        2.2    8.1   2.8    4.7  5  Nsp1_C        Nsp1-like C-terminal region


Domain annotation for each model (and alignments):
>> DUF4201  Domain of unknown function (DUF4201)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.0   0.7    0.0042        37      83     139 ..      77     133 ..      72     140 .. 0.87
   2 ?    8.0   3.4   0.00025       2.2      49     134 ..     120     205 ..     117     215 .. 0.85
   3 ?    3.8   0.4    0.0048        43      94     127 ..     270     303 ..     250     314 .. 0.83
   4 ?    4.8   0.2    0.0023        20      63     107 ..     490     534 ..     467     539 .. 0.88

  Alignments for each domain:
  == domain 1  score: 4.0 bits;  conditional E-value: 0.0042
     DUF4201  83 keklhmleselselkkelkekeerlaklrkelykvklerdklrkqneklkqqggllr 139
                  e + + e+ l +l  ++ e+ +  a+l+ +l ++++  + l+k+ + l +q + l+
  KOO22728.1  77 EEARAACERHLVTLPAKIVERRDATAALEVSLAELREAAASLDKEEQSLAEQQAALE 133
                 5777788888999999999******************************99988765 PP

  == domain 2  score: 8.0 bits;  conditional E-value: 0.00025
     DUF4201  49 ienqalnkkIeernkeLkrlkkkttktvhalthlkeklhmleselselkkelkekeerlaklrkelykvklerdklrkqneklkqq 134
                  e q+l ++ +  +  L++    ++ ++  l+  +e+ + l++  ++  ++l + e+ la+l++e +++++ +  l +  ++ ++q
  KOO22728.1 120 KEEQSLAEQQAALETALVAEEAEAAAQLASLEAARERVSSLSASKQRTSSQLLQGEQLLAALEAEASELEQSHPPLVAALQRSREQ 205
                 566777777777777777777888899999*******************************************8888888777777 PP

  == domain 3  score: 3.8 bits;  conditional E-value: 0.0048
     DUF4201  94 selkkelkekeerlaklrkelykvklerdklrkq 127
                  +++kel e e+  a+lr+e++ +k+e   l ++
  KOO22728.1 270 DAARKELAENEALTAALRDEMEALKTEAPALFAR 303
                 6789*********************998766655 PP

  == domain 4  score: 4.8 bits;  conditional E-value: 0.0023
     DUF4201  63 keLkrlkkkttktvhalthlkeklhmleselselkkelkekeerl 107
                  +L++lk     +v a+ +l +k+  l++e ++l+ ++ ++ er+
  KOO22728.1 490 SKLVELKGAFEAEVIAMDTLTKKRRGLAAEEEALRRRYVQLRERR 534
                 689*****************************9999988877664 PP

>> Nsp1_C  Nsp1-like C-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.9   0.3    0.0012        10      56     101 ..      33      80 ..      30      92 .. 0.85
   2 ?    8.1   2.8   0.00025       2.2      53     111 ..      95     153 ..      91     158 .. 0.87
   3 ?    0.2   0.4     0.068   6.1e+02      59      93 ..     157     191 ..     150     212 .. 0.66
   4 ?   -2.9   0.0      0.64   5.7e+03      86      96 ..     307     317 ..     265     324 .. 0.68
   5 ?    4.5   0.2    0.0033        29      46      75 ..     458     487 ..     450     497 .. 0.89

  Alignments for each domain:
  == domain 1  score: 5.9 bits;  conditional E-value: 0.0012
      Nsp1_C  56 gekIskLysevleaeqeqnkidqeLeyiesqq..deLeslLdnyEkel 101
                  e+Is+L+ ev++ae++ ++++ e   +e++q   eLe   d++E+  
  KOO22728.1  33 EERISALKVEVEAAEAALAALEAECGALEKEQgvAELEVRRDELEEAR 80 
                 689****************************95569998888888765 PP

  == domain 2  score: 8.1 bits;  conditional E-value: 0.00025
      Nsp1_C  53 vengekIskLysevleaeqeqnkidqeLeyiesqqdeLeslLdnyEkeleellsklesq 111
                 ve  +  ++L  ++ e +++ + +d+e + +++qq  Le+ L   E+e+ ++l++le +
  KOO22728.1  95 VERRDATAALEVSLAELREAAASLDKEEQSLAEQQAALETALVAEEAEAAAQLASLEAA 153
                 666777788999999999*******************************9999877655 PP

  == domain 3  score: 0.2 bits;  conditional E-value: 0.068
      Nsp1_C  59 IskLysevleaeqeqnkidqeLeyiesqqdeLesl 93 
                 +s+L  +  ++ ++  + +q L  +e++ +eLe+ 
  KOO22728.1 157 VSSLSASKQRTSSQLLQGEQLLAALEAEASELEQS 191
                 55555555555555556677777777777777765 PP

  == domain 4  score: -2.9 bits;  conditional E-value: 0.64
      Nsp1_C  86 qqdeLeslLdn 96 
                  q+eL++ L  
  KOO22728.1 307 AQRELDEALSA 317
                 45555555544 PP

  == domain 5  score: 4.5 bits;  conditional E-value: 0.0033
      Nsp1_C  46 neWDrvLvengekIskLysevleaeqeqnk 75 
                 ++WD ++  n  ++++L++++ +a ++qn+
  KOO22728.1 458 AQWDAAVEANAAELRALREDAARAAEAQNA 487
                 69**********************999987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (590 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1703  (0.0949858); expected 358.6 (0.02)
Passed bias filter:                      471  (0.0262703); expected 358.6 (0.02)
Passed Vit filter:                        72  (0.00401584); expected 17.9 (0.001)
Passed Fwd filter:                        34  (0.00189637); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 1.07u 0.35s 00:00:01.42 Elapsed: 00:00:00.54
# Mc/sec: 3298.51
//
Query:       KOO22729.1  [L=237]
Description: hypothetical protein Ctob_011626, partial [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.86    9.3   8.1        1.2    8.9   8.1    1.2  1  DUF4640   Domain of unknown function (DUF4640)
        3.5    7.6  24.7       0.22   11.6  10.4    2.1  2  DUF2927   Protein of unknown function (DUF2927)


Domain annotation for each model (and alignments):
>> DUF4640  Domain of unknown function (DUF4640)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.9   8.1   0.00013       1.2     123     277 ..      51     223 ..      20     236 .. 0.79

  Alignments for each domain:
  == domain 1  score: 8.9 bits;  conditional E-value: 0.00013
     DUF4640 123 qkLekflenekddedddsvlpesaqkEdfqlssssppdtaqvshqeedtcqdlpkvkalenedviqfpqipprlqerelae................ki 205
                  ++ek l + ++ + d+ + +e+a +E f+  +   +  aq+++ e+ +++ l++v +++ e+   ++   +r +  e +                  +
  KOO22729.1  51 TEIEKELLRARQSKADKEAAAEAASREAFRARAERDASSAQAAKAERAAAEALARVAQAKAEKEAAVEAAGERTKVAEGVAavarserdaataraktVE 149
                 34689999999*******************************************999999998888888888888877776788999999999999867 PP

     DUF4640 206 sqatksqrtssletssvssgkpeeedtas.etqalsclNfrwvfrW.LrqqvlSsllrRehpkkatkspkklaq 277
                 +qa ++  ++ ++  +  +++++ee+  s + q+l+ + +  v     r+   S l  R+++++ +++ ++ a+
  KOO22729.1 150 EQAAAEIARTRADKEAAITQQEKEEAVRSaNAQKLAAIRVAEVEAArARDEAASALAARDEARRVARGAEEVAA 223
                 77777766666677677777777777777699999999999986443899999999999998877766665543 PP

>> DUF2927  Protein of unknown function (DUF2927)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6  10.4   2.5e-05      0.22      32     149 ..      24     150 ..      12     154 .. 0.79
   2 ?    2.0   6.3     0.022   1.9e+02      40     106 ..     166     232 ..     155     236 .. 0.71

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 2.5e-05
     DUF2927  32 vrvavegvppadraedlelveaelarlaritglpialvaseeeanltvlfveedelqalvprlisaaalaklekllrealClvv........aefrknr 122
                 +++a+e v++ d+a d++++ea +++l++i++  +++ +s+++ +   ++++++ ++a ++r +s+a++ak e++++eal  v         a      
  KOO22729.1  24 IQFAAERVTELDNALDEAALEATAQQLTEIEKELLRARQSKADKEAAAEAASREAFRARAERDASSAQAAKAERAAAEALARVAqakaekeaA------ 116
                 77888899999***************************************************9999999999**********88644444332...... PP

     DUF2927 123 rs.......eitravv.lipvdqpdqerrdCihEE 149
                          +++++v+ + ++++  +  r+  +EE
  KOO22729.1 117 -VeaagertKVAEGVAaVARSERDAATARAKTVEE 150
                 .1445544444444440445555555555666666 PP

  == domain 2  score: 2.0 bits;  conditional E-value: 0.022
     DUF2927  40 ppadraedlelveaelarlaritglpialvaseeeanltvlfveedelqalvprlisaaalaklekl 106
                 +  +++++++  +a++++la i+  +++++++++ea   + + +e+++ a  ++ + aaa+ak e++
  KOO22729.1 166 AITQQEKEEAVRSANAQKLAAIRVAEVEAARARDEAASALAARDEARRVARGAEEVAAAAKAKAEQA 232
                 4456666666667899****************99998888777777666666655655555554444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (237 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2760  (0.153941); expected 358.6 (0.02)
Passed bias filter:                      496  (0.0276647); expected 358.6 (0.02)
Passed Vit filter:                       116  (0.00646996); expected 17.9 (0.001)
Passed Fwd filter:                        31  (0.00172904); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.87u 0.32s 00:00:01.19 Elapsed: 00:00:00.49
# Mc/sec: 1460.08
//
Query:       KOO22730.1  [L=619]
Description: hypothetical protein Ctob_011622 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.2e-13   50.2   0.0    7.9e-07   29.0   0.0    2.4  2  PLDc_2    PLD-like domain
  ------ inclusion threshold ------
      0.042   14.0   0.2        1.1    9.5   0.0    2.5  2  PLDc      Phospholipase D Active site motif
      0.044   13.9   0.1      0.098   12.8   0.1    1.5  1  DUF3782   Protein of unknown function (DUF3782)


Domain annotation for each model (and alignments):
>> PLDc_2  PLD-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.8   0.0     2e-07    0.0012       6     106 ..      83     195 ..      76     216 .. 0.72
   2 !   29.0   0.0   1.3e-10   7.9e-07      11     129 ..     446     584 ..     438     588 .. 0.82

  Alignments for each domain:
  == domain 1  score: 18.8 bits;  conditional E-value: 2e-07
      PLDc_2   6 ksAkksidiatyyf...vsdreildallk.aakrgvkvrilldskkd.........dagavdeaslkelkellleagvevrvfetllgslHaKlylid. 90 
                  +A ++idi  y f   +s++++l+al +  ++rgv+v   ld +           ++++vd  + ++l++  +++ +   +  + +   H K+++++ 
  KOO22730.1  83 TQAGDRIDIGLYLFeggQSSEAVLAALTEaGHARGVQVCFQLDVSYVsmisrivekTDTLVD--RVAQLANE-QRQWCSCAWGSKPD---HGKYACFQr 175
                 4788**********99999999*****88789***999888887444777777654333333..33444444.45566655554445...*******95 PP

      PLDc_2  91 ....gktvivGSsNltkrgl 106
                     ++ +i+G++Nl +r +
  KOO22730.1 176 qpprEDSAILGGMNLGDRFT 195
                 555555*********99855 PP

  == domain 2  score: 29.0 bits;  conditional E-value: 1.3e-10
      PLDc_2  11 sidiatyyfvsdreildallkaakrgvkvrilldskkddagavdeaslkelkellleagvevrvfetllgslHaKlylidgk................. 92 
                 + +i + y+  +r+ ++ l  a +rg  + +ll++    a++ ++++ k  ++ll +   +++++ +  +++HaK++l  +                  
  KOO22730.1 446 RFRITMAYL-GHRWGVELLEYALRRGATIALLLPE---RANVYAHENVKAAQTLLDARWPNLELYLH-PEMVHAKAMLAWEVdatadgssgaagaaapt 539
                 6799*****.99999988888*************9...66777788899999996665556566655.589*******963345678889999999999 PP

      PLDc_2  93 tvivGSsNltkrgl........dlnlElnvviedkelakeleeeF 129
                 ++++GS+Nl + +l            Elnv i  +++ + le+ +
  KOO22730.1 540 VAFLGSANLVRGSLnlpvhcglLPYDELNVLIRERTFCETLEASM 584
                 **************8888877766679999999998888887765 PP

>> PLDc  Phospholipase D Active site motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.8   0.1     0.052   3.1e+02      17      27 ..     183     193 ..     180     193 .. 0.86
   2 ?    9.5   0.0   0.00019       1.1      13      28 .]     523     552 ..     512     552 .. 0.79

  Alignments for each domain:
  == domain 1  score: 1.8 bits;  conditional E-value: 0.052
                 EEEE---SSHH CS
        PLDc  17 afvGgaNLcdg 27 
                 a++Gg+NL d+
  KOO22730.1 183 AILGGMNLGDR 193
                 789*****997 PP

  == domain 2  score: 9.5 bits;  conditional E-value: 0.00019
                 TTT..............EEEEE---SSHHH CS
        PLDc  13 Ddr..............vafvGgaNLcdgr 28 
                 D++              vaf+G+aNL +g+
  KOO22730.1 523 DATadgssgaagaaaptVAFLGSANLVRGS 552
                 55566666666777777*********9996 PP

>> DUF3782  Protein of unknown function (DUF3782)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.1   1.6e-05     0.098      21      50 ..     441     471 ..     420     480 .. 0.77

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 1.6e-05
     DUF3782  21 ekeieklertigaLGaRWGlv.sEeafRegl 50 
                 ++++++++ t++ LG+RWG+   E a+R g 
  KOO22730.1 441 DSRLMRFRITMAYLGHRWGVElLEYALRRGA 471
                 4578999************962699999875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (619 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       540  (0.0301188); expected 358.6 (0.02)
Passed bias filter:                      368  (0.0205254); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.56u 0.27s 00:00:00.83 Elapsed: 00:00:00.42
# Mc/sec: 4472.23
//
Query:       KOO22731.1  [L=1001]
Description: amino acid permease family protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    6.4e-36  124.1  18.9    6.4e-36  124.1  18.9    2.2  3  AA_permease_2  Amino acid permease
    7.7e-20   71.1  48.7    2.6e-19   69.4  22.9    4.5  3  MFS_1          Major Facilitator Superfamily
    1.4e-17   63.5  16.0    1.4e-17   63.5  16.0    2.7  3  AA_permease    Amino acid permease


Domain annotation for each model (and alignments):
>> AA_permease_2  Amino acid permease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   1.7      0.44   2.6e+03      84     109 ..     213     238 ..     188     298 .. 0.64
   2 ?   -3.8   1.1      0.72   4.3e+03      95     126 ..     427     464 ..     382     472 .. 0.49
   3 !  124.1  18.9   1.1e-39   6.4e-36      13     398 ..     568     951 ..     563     978 .. 0.84

  Alignments for each domain:
  == domain 1  score: -3.1 bits;  conditional E-value: 0.44
  AA_permease_2  84 nwfayvpvlasilsvaasyllnalgp 109
                      fa++p++++++s++a  +++a g 
     KOO22731.1 213 VSFAAMPAVVFSVSAIADQIMYAYGR 238
                    45555565655666666665555543 PP

  == domain 2  score: -3.8 bits;  conditional E-value: 0.72
  AA_permease_2  95 ilsvaasyllnalgp......dlqgntwltyliaiail 126
                    +++  a++ll+ +g       ++  n   +++++++il
     KOO22731.1 427 GMYFTANALLYTVGAplvglfTTPANARRMIVCGMVIL 464
                    23333444444443224433222222233444444444 PP

  == domain 3  score: 124.1 bits;  conditional E-value: 1.1e-39
  AA_permease_2  13 svigsgifvkn........laasggpalilwvw.iavligslavllvyaElssalprsgGiyvytkaafgkkvaflsawfnwfayvpvlasilsva 99 
                     ++g+++f+++        +++++gpa++l ++ +   ++sl+++l  aEl+s++p+ gG + ++++afg++va+l+a+ +++a ++ la++ +++
     KOO22731.1 568 HLVGLTFFAVSggdygiedAVGAAGPAWTLLGLlVLPWVWSLPMALMTAELGSMIPDVGGPIIWVQRAFGPLVAHLNAIVHLVAGFFDLALYPVMF 663
                    56777777777788888888999***965555428889999**********999****************************************** PP

  AA_permease_2 100 asyllnalgpdlqgntwltyliaiaililvalinirgikesakiqnilgilkillpliiliilglitvdgggfsslstetdtffpn...gwpgv.l 191
                    a yl   ++p l  +    yl+ ++ l  ++l+n+ g+  +a + ++ + l+i  p  ++ +++  t+ +g        t  ++++     +gv +
     KOO22731.1 664 ADYLRE-FHPALRLEGLGRYLLSSGMLGAITLLNLAGVEAVAAVSTVFTALVI-SP--FVALAADMTAAIGADA-----T-DVVGGgylAATGVrW 749
                    ****99.78*99999999***********************************.89..4444444444444443.....3.344443655666567 PP

  AA_permease_2 192 lglli.vlwsfdGfesaanvseevkk..kdvpkaifigllivlvlyllvniaflgvvpddeianlsn.lgsvaalffeavggkvvaiivvilials 283
                    +++l  +lw ++G++s   ++ ev++  +d+p+a++ ++++++++y+l   +++gv+ dd  + +s   g++a + +e+vg +++a+ +++++a+s
     KOO22731.1 750 GTFLSvMLWNTSGYDSMGAFAAEVENpgRDFPRAMVAAIVLITLVYVLP--VAVGVSLDDRASLPSWtDGTFARVAAEQVG-PWLARWISLGGAIS 842
                    77766369***************998889*******************9..888888888888877733446889999988.************** PP

  AA_permease_2 284 llgaintavigssrvlealardgvlPrffakvn.kfgspiraiiltaivslillllfllassaaynfllsvsslgliisyllliigalilrkkrph 378
                    +lg++n+++ +++r + ++a  g+lPr++a v+ + g+p     l++ + l+l +++ l     +  l+++s++++    +l +++++ lr  +p+
     KOO22731.1 843 ALGILNSLLCAAARNAVSAADIGALPRVLATVHaPSGTPR-LATLSLSLGLLL-VIS-L----PFRQLVELSMIFYGATTGLEFFALVRLRSLEPR 931
                    *********************************7787775.555677777444.333.3....49******************************* PP

  AA_permease_2 379 lkrpgkilvaiigalfllfl 398
                     +rp+++++a  g+l+++ +
     KOO22731.1 932 TPRPYRMPLADGGVLIAFCV 951
                    ******98887776665544 PP

>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.4  22.9   4.4e-23   2.6e-19      11     235 ..     189     411 ..     183     414 .. 0.81
   2 !   16.8  17.8   4.1e-07    0.0024       3     121 ..     394     502 ..     392     541 .. 0.69
   3 ?  -21.9  24.3         3   1.8e+04     154     154 ..     845     845 ..     683     989 .. 0.47

  Alignments for each domain:
  == domain 1  score: 69.4 bits;  conditional E-value: 4.4e-23
       MFS_1  11 arsilgpalplalaedlgispseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalg.lllllfa......sslw.lllvlrvlqGlgaga 101
                  +s+l +++p  +a++ g+s  ++g  +++  ++ +  s ++  ++  +Grrr+++lg +++a++ +ll++ a      +++  + lv+ + qG+g+++
  KOO22731.1 189 IFSVLPTFFP-PVAKSKGMSDFVLGVSFAAMPAVVFSVSAIADQIMYAYGRRRIFILGNAITAAFtALLGA-AtlmpdgAPFAaFCLVSQIGQGFGSAL 285
                 5677888888.89999999999999988887777777777777777789****************555555.235568899**9*************** PP

       MFS_1 102 lfpagaaliadwfpkeergraigllsagfslGailgpllggllasslgWravfyilaivsllafvlfllllpeepperkrkspkeeekgtgpaplvp.. 198
                 + +++ alia++fp+ + ++++gl  ++++lG+++gp++ggll + +g+  +f+ la ++l ++v f+ + +++  +++ k ++e     ++  +++  
  KOO22731.1 286 AEASSFALIAELFPR-RVTFYFGLNETFTGLGVAIGPPIGGLLFAIGGFWCPFVTLACALLPGIV-FIHVALRPSAAEGFKDEVEG----VEDDVSEag 378
                 ***************.********************************9999**99999999988.45666666666666666666....555555544 PP

       MFS_1 199 .awkallkdpvlwillialllfffgfsglltllplylq 235
                  +++ l+ + v   + i+l+++  + s++++l+p++  
  KOO22731.1 379 sVLTVLRVPGV---ATIMLACVL-AESAITFLMPTF-A 411
                 36666666663...445555553.8999*******8.3 PP

  == domain 2  score: 16.8 bits;  conditional E-value: 4.1e-07
       MFS_1   3 laaflsalarsilgpalpl.alaedlgispseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllllfasslw.lllvlrvlqGlga 99 
                 la +l+  a+++l+p++ + ala+ lg s+ +ig+ +t+ al++ v+++++G +++   +rr++++g+++++ +++l+   + l   l+ + ++  ++ 
  KOO22731.1 394 LACVLAESAITFLMPTFAEhALATGLGTSAPAIGMYFTANALLYTVGAPLVGLFTTPANARRMIVCGMVILSGACFLIG--PRLGeGLAMAPLMEDMMV 490
                 5666777788899*************************************************************56555..444434444444444443 PP

       MFS_1 100 galfpagaaliadwfpkeergr 121
                 ++          + ++    ++
  KOO22731.1 491 SC---------GANSSA-YLNS 502
                 22.........222222.2222 PP

  == domain 3  score: -21.9 bits;  conditional E-value: 3
       MFS_1 154 f 154
                  
  KOO22731.1 845 G 845
                 1 PP

>> AA_permease  Amino acid permease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.6   0.2     0.013        79     283     324 ..     201     242 ..     190     249 .. 0.94
   2 ?   -2.1   0.2      0.18   1.1e+03      86     104 ..     388     406 ..     347     478 .. 0.74
   3 !   63.5  16.0   2.3e-21   1.4e-17      22     351 ..     587     894 ..     582     922 .. 0.81

  Alignments for each domain:
  == domain 1  score: 1.6 bits;  conditional E-value: 0.013
  AA_permease 283 sgvsvlaplinaviltaalssansslysasRvlyslakdgla 324
                  ++++++++++  v+++a   ++ s +++a +++y++ +++++
   KOO22731.1 201 AKSKGMSDFVLGVSFAAMPAVVFSVSAIADQIMYAYGRRRIF 242
                  578999********************************9986 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 0.18
  AA_permease  86 witvlaleltaasiliqfw 104
                  ++++++l+++ a++ i+f+
   KOO22731.1 388 GVATIMLACVLAESAITFL 406
                  4455555555555555555 PP

  == domain 3  score: 63.5 bits;  conditional E-value: 2.3e-21
  AA_permease  22 vlsqaGplgallayl.lagvviflvmlslgeiatngpksggfytyasrflgpelGfviGlnylfswitvlaleltaasiliqfwelvtdlpkawvt.. 116
                  ++++aGp+ +ll++l l++v ++ ++l+++e+ +++p +gg   +++r  gp ++   ++  l+ +++ lal  +  + ++      ++l  +++   
   KOO22731.1 587 AVGAAGPAWTLLGLLvLPWVWSLPMALMTAELGSMIPDVGGPIIWVQRAFGPLVAHLNAIVHLVAGFFDLALYPVMFADYLREF--HPALR-LEGLgr 681
                  7899********976379****************************************************99855444444433..34444.555567 PP

  AA_permease 117 ...gavflvvlliinlvgvkvygeaefilalikiiaiiafiivgiillaggkpnkgagfrflgdngsifknnlppgfakeeegafknfisvfvivvfa 211
                     ++ +l++++++nl+gv++ ++++++++ ++i  ++a+        +g++ ++                 +++g+   ++++   f+sv+   +  
   KOO22731.1 682 yllSSGMLGAITLLNLAGVEAVAAVSTVFTALVISPFVALAADM-TAAIGADATDV----------------VGGGYLAATGVRWGTFLSVM---LWN 759
                  777999******************************99986655.34445554555................56676666677777777776...567 PP

  AA_permease 212 ftGielvaiiagEvkdPeksiPkailqvviritifYvlsllligllvprndlgllndsasaaspfvifikesgvsvlaplinaviltaalssanssly 309
                   +G+ + ++ a+Ev++P ++ P+a+  ++++it++Yvl +++ ++l +r +l + +   +  + f  +  e   + la  i ++  ++al+++ns+l 
   KOO22731.1 760 TSGYDSMGAFAAEVENPGRDFPRAMVAAIVLITLVYVLPVAVGVSLDDRASLPSWT---D--GTFARVAAEQVGPWLARWISLGGAISALGILNSLLC 852
                  889999999****************************9888888777777766666...3..4799999999************************** PP

  AA_permease 310 sasRvlyslakdglaP.kvlkkvskrgvPlraillsmiislla 351
                  +a R   s a+ g++P   ++++  +g P  a l  + ++ll+
   KOO22731.1 853 AAARNAVSAADIGALPrVLATVHAPSGTPRLATLSLS-LGLLL 894
                  ****************555566778899988865433.33333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1001 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       531  (0.0296168); expected 358.6 (0.02)
Passed bias filter:                      263  (0.014669); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.67u 0.27s 00:00:00.94 Elapsed: 00:00:00.40
# Mc/sec: 7473.35
//
Query:       KOO22732.1  [L=301]
Description: aminoglycoside phosphotransferase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.4e-11   43.5   0.0    3.7e-11   42.9   0.0    1.3  1  EcKinase  Ecdysteroid kinase
    7.3e-07   29.3   0.1    1.2e-06   28.6   0.1    1.4  1  APH       Phosphotransferase enzyme family
    0.00017   20.6   0.0    0.00022   20.2   0.0    1.2  1  DUF1679   Protein of unknown function (DUF1679)


Domain annotation for each model (and alignments):
>> EcKinase  Ecdysteroid kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.9   0.0   6.2e-15   3.7e-11     196     287 ..     117     205 ..      91     210 .. 0.88

  Alignments for each domain:
  == domain 1  score: 42.9 bits;  conditional E-value: 6.2e-15
    EcKinase 196 kenlferllelveekeeefnvlnHGDlwvnNimfkydeegepedvilvDFQlsrygSpalDLlyflytsteeelrkekfdellriYhesLve 287
                 +++l +r + ++++  ++  ++ HGD ++ N+ f+      p  v++vDF ++ ++  ++D++++++ s++ + r+++ + ++ +Yh+ Lv+
  KOO22732.1 117 MPKLRRRHRYIIQQLFKPPLTMAHGDAHIENVFFHER---FPGGVCFVDFGNMMFSQGMCDVAFYVVNSLQVADRRAQEEAMVTHYHTTLVA 205
                 56667777777778888889**************765...688***********************************************86 PP

>> APH  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.6   0.1   2.1e-10   1.2e-06     150     230 ..     111     201 ..      22     211 .. 0.66

  Alignments for each domain:
  == domain 1  score: 28.6 bits;  conditional E-value: 2.1e-10
                 HHHHHHHHHH--S.........SS-EEEE-SS-SGGGEEEC..TTEEEEE---TT-EEEECCHHHHCCHHH.CSCHCCCHCHHHHHHHHCS CS
         APH 150 eqvlaalaallpg.........elptvllHgDlhpgNllvdpddgrvtGviDfedaglgpplyDlavllrs.wtseldpeflaallrayeq 230
                 + + +++++l+++           p +  HgD h  N+ ++++ +  ++++Df+ ++ +  ++D+a+ + + +  + + ++ +a++  y+ 
  KOO22732.1 111 APIVEWMPKLRRRhryiiqqlfKPPLTMAHGDAHIENVFFHERFPGGVCFVDFGNMMFSQGMCDVAFYVVNsLQVADRRAQEEAMVTHYHT 201
                 336677777777777778888789999**************55444459*****************9995558888888888888888874 PP

>> DUF1679  Protein of unknown function (DUF1679)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.2   0.0   3.7e-08   0.00022     270     363 ..     138     224 ..     127     283 .. 0.81

  Alignments for each domain:
  == domain 1  score: 20.2 bits;  conditional E-value: 3.7e-08
     DUF1679 270 lvhgDlwsaNiLfseeeegklklkkviDyQlvslgnpaeDlvrlllscLsgedRrarkeelLeqyyetflkaledngeepytleqLkdsYklyf 363
                 + hgD    N++f+e   g +++   +D+  + +++   D++  ++ +L  +dRra++e +  +y++t++ +  ++    yt+e  +  Y l  
  KOO22732.1 138 MAHGDAHIENVFFHERFPGGVCF---VDFGNMMFSQGMCDVAFYVVNSLQVADRRAQEEAMVTHYHTTLVAEGVKD----YTIERCRLDYVLNL 224
                 689999999*9999999999886...9******************************************9987444....88887776665443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (301 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       450  (0.025099); expected 358.6 (0.02)
Passed bias filter:                      390  (0.0217525); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.45u 0.25s 00:00:00.70 Elapsed: 00:00:00.41
# Mc/sec: 2217.10
//
Query:       KOO22733.1  [L=814]
Description: 2-oxoglutarate-dependent dioxygenase family protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
      5e-35  121.5   0.0    8.9e-35  120.7   0.0    1.4  1  2OG-FeII_Oxy_2  2OG-Fe(II) oxygenase superfamily
    2.4e-15   57.0   0.0    4.5e-15   56.2   0.0    1.4  1  ASCH            ASCH domain
    1.8e-11   43.8   8.2    3.7e-11   42.8   8.2    1.5  1  zf-C2HC5        Putative zinc finger motif, C2HC5-type


Domain annotation for each model (and alignments):
>> 2OG-FeII_Oxy_2  2OG-Fe(II) oxygenase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  120.7   0.0   1.5e-38   8.9e-35       1     196 []     597     812 ..     597     812 .. 0.87

  Alignments for each domain:
  == domain 1  score: 120.7 bits;  conditional E-value: 1.5e-38
  2OG-FeII_Oxy_2   1 glllipnflsaeeaaellrelleegp....frqptilggkrvsvqqtllgplgwatdgpgyrysekesvdakplspfpeallrlverlvkaag.. 89 
                     gl+l+++ ls   ++++++e++e+g     f++p+++g   +++q++ +  ++w +++++y+  +  + d++p++p+p al +lv+++++ a   
      KOO22733.1 597 GLVLLRGALSLDVQQAIIDEIRELGLgpsgFYTPETRG-GSMHLQMM-CLGMHWDPLTNQYSTVRS-NADGQPVPPLPPALWELVCAAAATASea 688
                     68899999999899999999985433335588888877.57999998.88**************88.9********************998879* PP

  2OG-FeII_Oxy_2  90 ...pegwspnaalvnfYrdgariglHqDkees....aleapivSlSLGasatfrf...gkesree............eiiailLesGdllvmgge 162
                        +++  p ++l nfY  g r+g+HqDk+es    + + p+vS+SLG++++f +   ++e   +            + ++++LesGd+l++gg+
      KOO22733.1 689 cpsIPDVMPGVCLANFYTHGGRLGMHQDKSESadslRRGVPVVSVSLGDACEFGYaavRPE---DtdasqtalggaaKARTVRLESGDILIFGGP 780
                     ***999************************999999999**************88333433...2334677888888****************** PP

  2OG-FeII_Oxy_2 163 srkayHgvprikkdtapeleleelrtrRinlTfR 196
                     +r+ +H+v++i ++  p+     l  +R+nlTfR
      KOO22733.1 781 ARMLFHSVQKIFPNHRPK--GLVLAPGRLNLTFR 812
                     *************98888..566779*******9 PP

>> ASCH  ASCH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.2   0.0   7.5e-19   4.5e-15       1      58 [.     318     422 ..     318     459 .. 0.92

  Alignments for each domain:
  == domain 1  score: 56.2 bits;  conditional E-value: 7.5e-19
                 EEE-TTHHHHHHTTS--EEEESSTTTGGGT-CEEEEEECCC..................................................CTSEEEEE CS
        ASCH   1 lsfhqelaslivsGkKtaeirvwdeelpkvrgdllilaalk..................................................ptgralgi 49 
                 ls+hq++asl+v+G+K++e+r+w++e   +rg+l+i+ ++k                                                  pt+ +lg+
  KOO22733.1 318 LSMHQPWASLLVAGIKRVEGRSWPTE---HRGRLWIASTAKepsslevaqveqtyasrfsavhassggarydavmamqqqvhtfpafptsyPTSALLGC 413
                 79************************...********9999********************************************************** PP

                 EEEEEEEEE CS
        ASCH  50 vevtkvevk 58 
                 v++t++++ 
  KOO22733.1 414 VTITDCLTN 422
                 ******775 PP

>> zf-C2HC5  Putative zinc finger motif, C2HC5-type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.8   8.2   6.2e-15   3.7e-11       2      43 ..     133     170 ..     132     177 .. 0.93

  Alignments for each domain:
  == domain 1  score: 42.8 bits;  conditional E-value: 6.2e-15
    zf-C2HC5   2 kkCnCqatrHpLleaapnClnCGkiiCakeglskpCsfCgsp 43 
                 ++C+C+a+rH+L   + nCl+CGk+iC++eg  +pC fCgs+
  KOO22733.1 133 HACSCNARRHAL---LYNCLACGKVICEQEGE-GPCLFCGSD 170
                 68**********...99***************.******975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (814 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       744  (0.041497); expected 358.6 (0.02)
Passed bias filter:                      403  (0.0224776); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.62u 0.26s 00:00:00.88 Elapsed: 00:00:00.41
# Mc/sec: 5987.14
//
Query:       KOO22734.1  [L=576]
Description: aspartyl-tRNA synthetase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    6.2e-74  248.9   0.0    8.4e-74  248.5   0.0    1.2  1  tRNA-synt_2      tRNA synthetases class II (D, K and N)
    2.4e-06   27.4   0.1    4.1e-06   26.7   0.1    1.4  1  tRNA_anti-codon  OB-fold nucleic acid binding domain
    0.00034   20.2   0.1      0.078   12.4   0.0    2.5  3  tRNA-synt_2d     tRNA synthetases class II core domain (F)
  ------ inclusion threshold ------
      0.014   15.6   0.0       0.03   14.5   0.0    1.5  1  tRNA_anti_2      OB-fold nucleic acid binding domain
       0.42    9.8   3.9       0.64    9.2   3.9    1.2  1  DUF1682          Protein of unknown function (DUF1682)


Domain annotation for each model (and alignments):
>> tRNA-synt_2  tRNA synthetases class II (D, K and N)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  248.5   0.0   2.3e-77   8.4e-74       2     313 ..     237     570 ..     236     571 .. 0.91

  Alignments for each domain:
  == domain 1  score: 248.5 bits;  conditional E-value: 2.3e-77
                  CCHHHHTHHHHCCSHHHHHHHHHHHHHHHHHHHHHHHTT-EE----SEESS--SSSS--EEEEETTT.TEEE....-E-S-SHHHHHHHHHCTHSEEE CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx....xxxxxxxxxxxxxxxxxxxxxx RF
  tRNA-synt_2   2 eelrlknryldlrtekvskvlrlrstvtkavrkyleengfieietPiLsksdteegarlFkvksrekekeff....aLtqspqlylellivagidrvf 95 
                  +e rl+ r++dlr +  ++++r++s+v +++r+ l ++gf+ei+tP ++  ++e+g+  F++       ++f     L+qspqly+++ i+a ++rvf
   KOO22734.1 237 QEQRLNSRWIDLRVPAQHAIMRAQSHVCTLFREALLKQGFTEIHTPKIIAGESEGGSGVFTT-------DYFgrtaCLAQSPQLYKQMAIAADLERVF 327
                  6899**********************************************************.......88888889********************* PP

                  EEEEEE--S--BTTB-S-CEEEEEEEEET-.SCHHHHHHHHHHHHHHHHHHHHCSCCCCCHTTTTTS....EE-SSS-EEEEHHHHHHHHHTS..... CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx....xxxxxxxxxxxxxxxxxxxxxx..... RF
  tRNA-synt_2  96 qiaraFRaEdsrtdrhlaEFtqieaemsfi.eeedimqvleelikslvkevlessakdiefvirrns....kdlkkpfkrltykeaieklnei..... 183
                  +i+++FRaE+s+t+rhl EF+ +++e+++   +++++ vl  +++s+++ + +++a ++   ir ++       +++   ++++ea e l++      
   KOO22734.1 328 EIGPVFRAEKSNTRRHLCEFVGLDIEIAINlHYNEVIGVLHAMLTSIFDGLETRHAAEM-AAIRAQFpssvPRWTNEPCIVHWEEANEMLEKAvdang 424
                  ***************************98625666****************65555554.444443333332333333367777777777666***** PP

                  ...............-SS--HHHHHHHHH....HS--SEEEEEEEBGGGSTTCBBBSTTSTTBBSEEEEEETTEEEEEEEEB--SHHHHHHHHHHCCH CS
                  ...............xxxxxxxxxxxxxx....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  tRNA-synt_2 184 ...............gkdldkaderalvk....keknepvfvtdfPaelkpFyarkeeddkkltesyDllingvElvgGslRiedpeeleeklkskgl 262
                                  +dl++a+er+l +    k +++ vfv ++P+ ++pFy+  + dd++ t+syD+l++g E+++G++Ri+dpe+l e++k+kg 
   KOO22734.1 425 qpyldvegkpvgapgFEDLSTAQERLLGQlvadKYGTDLVFVDRYPRGVRPFYTMPCADDPRYTNSYDVLLRGEEICSGAQRIHDPEMLVENIKAKGA 522
                  **************9999*******998888889**************************************************************** PP

                  HSSSGGGGHHHHHHHHCT--SEEEEEEEHHHHHHHHCT-SSGGGCSSS-XX CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  tRNA-synt_2 263 deeaeekfswylealeyGapphgGlglGldRlvmlllgsesIrdviaFPkl 313
                  +    e+++ y++ ++yG+pphgG g+Gl+Rlv l lg++++r++++FP+ 
   KOO22734.1 523 S---VESLQAYIDSMRYGMPPHGGGGIGLERLVFLYLGLDNVRKASMFPRD 570
                  *...*********************************************95 PP

>> tRNA_anti-codon  OB-fold nucleic acid binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.7   0.1   1.1e-09   4.1e-06       1      69 [.     114     194 ..     114     201 .. 0.87

  Alignments for each domain:
  == domain 1  score: 26.7 bits;  conditional E-value: 1.1e-09
                      EEEEEEEEEEEEEEETTEEEEEEEETT.EEEEEEEET........HHHHHHHTTS-TTSEEEEEEEEEECTTS.....SEEEE CS
  tRNA_anti-codon   1 VtvaGrvtsisdrsggkvifidlrDgt.griqvvlfr........eeatklaenlkeGdvvrvtGrvkrrpgg.....elelk 69 
                      V+v+Grv++   r+g++ +f++lr     ++q+v+f+        +e+ + +  l+e++v+ ++G++   + +      +el+
       KOO22734.1 114 VWVRGRVSRL--RAGASNCFLVLRAAGqYTVQAVFFKdkatprqsKEMISALGALTEESVLDIRGKLVQADVRscsqaNVELQ 194
                      89********..*************999***************************************9884444444435555 PP

>> tRNA-synt_2d  tRNA synthetases class II core domain (F)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.0         1   3.7e+03      20      43 ..     261     284 ..     247     287 .. 0.68
   2 !   12.4   0.0   2.2e-05     0.078     101     160 ..     323     381 ..     301     388 .. 0.82
   3 !    4.7   0.0     0.005        18     215     233 ..     545     563 ..     537     572 .. 0.89

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 1
                   HHHHHHHHHHHHCTTCEESSTTSE CS
  tRNA-synt_2d  20 tkvleeikeiflelgfeevegpev 43 
                   ++v   ++e +l+ gf+e++ p++
    KOO22734.1 261 SHVCTLFREALLKQGFTEIHTPKI 284
                   344455778888899999998876 PP

  == domain 2  score: 12.4 bits;  conditional E-value: 2.2e-05
                   SEEEEEEEEEEBSST.-SSSB-SEEEEEEEEEEETT--HHHHHHHHHHHHHHHCTSTEEEE CS
  tRNA-synt_2d 101 pikiisigrvfRrda.vDathlaeFhqveglvvdenvsladlkgvleellkklfgaevkvr 160
                     +++ ig vfR ++   ++hl eF  ++   +  n++ ++++gvl+++l+++f+   ++r
    KOO22734.1 323 LERVFEIGPVFRAEKsNTRRHLCEFVGLDI-EIAINLHYNEVIGVLHAMLTSIFDGL-ETR 381
                   5699**********977899********96.56679*****************9754.555 PP

  == domain 3  score: 4.7 bits;  conditional E-value: 0.005
                   EEEHHHHHHHHHT-SSGHH CS
  tRNA-synt_2d 215 GlGveRlamlkygieDiRe 233
                   G+G+eRl  l +g++++R+
    KOO22734.1 545 GIGLERLVFLYLGLDNVRK 563
                   9*****************7 PP

>> tRNA_anti_2  OB-fold nucleic acid binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.5   0.0   8.4e-06      0.03      20      60 ..     112     152 ..     107     191 .. 0.81

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 8.4e-06
  tRNA_anti_2  20 kavwvrGeisnlkrkasghvYftLkD.ekakisavifrsraa 60 
                  ++vwvrG +s l r+    +++ L+   + +++av+f+ +a+
   KOO22734.1 112 QEVWVRGRVSRL-RAGASNCFLVLRAaGQYTVQAVFFKDKAT 152
                  57**********.645778******877789*******7763 PP

>> DUF1682  Protein of unknown function (DUF1682)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.2   3.9   0.00018      0.64     253     299 ..      24      70 ..      10      73 .. 0.84

  Alignments for each domain:
  == domain 1  score: 9.2 bits;  conditional E-value: 0.00018
     DUF1682 253 klrpevlkklkktReevekklkkeaeeekaEeaqekkeeekkkeree 299
                  l++++lkkl k+ + ++kk +k+ae   aEea ++ + e ++e+ee
  KOO22734.1  24 PLSKNALKKLAKAAATAQKKAQKAAERVSAEEAGAAEQSETEEEEEE 70 
                 599*****************************997777777777765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (576 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1109  (0.0618551); expected 358.6 (0.02)
Passed bias filter:                      834  (0.0465168); expected 358.6 (0.02)
Passed Vit filter:                       103  (0.00574488); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.67u 0.31s 00:00:00.98 Elapsed: 00:00:00.43
# Mc/sec: 3980.66
//
Query:       KOO22735.1  [L=741]
Description: hmg (high mobility group) box domain containing [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.9e-15   56.4   0.1    2.9e-15   56.4   0.1    2.5  3  HMG_box        HMG (high mobility group) box
    2.8e-10   40.6   0.3    2.8e-10   40.6   0.3    2.2  2  HMG_box_2      HMG-box domain
  ------ inclusion threshold ------
        5.9    6.0   5.1        9.8    5.3   5.1    1.3  1  TMPIT          TMPIT-like protein


Domain annotation for each model (and alignments):
>> HMG_box  HMG (high mobility group) box
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.1         2   1.2e+04      40      62 ..     380     402 ..     377     407 .. 0.60
   2 ?   -4.5   3.1         3   1.8e+04      41      62 ..     406     427 ..     400     429 .. 0.63
   3 !   56.4   0.1   4.9e-19   2.9e-15       1      66 [.     430     495 ..     430     497 .. 0.98

  Alignments for each domain:
  == domain 1  score: -3.2 bits;  conditional E-value: 2
                 HHSHHHHHHHHHHHHHHHHHHHH CS
     HMG_box  40 kalseeeKkkYeekaekekarye 62 
                 kal++e+K+  +++ ++e+ + +
  KOO22735.1 380 KALEKEAKATKRAAERAERDQAN 402
                 55666666665555555555555 PP

  == domain 2  score: -4.5 bits;  conditional E-value: 3
                 HSHHHHHHHHHHHHHHHHHHHH CS
     HMG_box  41 alseeeKkkYeekaekekarye 62 
                 ++++eeKk  +e+ ++ ka+ +
  KOO22735.1 406 KVEKEEKKAKREAERAIKAELM 427
                 4556666666666666666665 PP

  == domain 3  score: 56.4 bits;  conditional E-value: 4.9e-19
                 --SS--HHHHHHHHHHHHHHHHSTTS-HHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHH CS
     HMG_box   1 pkRplsafflfskeqraklkaenPelknaeiskklgekWkalseeeKkkYeekaekekaryekekp 66 
                 p +p s+++ f++e r+ l+a +P+ ++ +++k  g+ Wkal e+eK+ Y +ka+++ +ry +e++
  KOO22735.1 430 PRKPHSSYLYFCDETREALRAAHPDTSVPDLAKLQGAAWKALDESEKQVYMDKAAEDLERYTAEME 495
                 789************************************************************997 PP

>> HMG_box_2  HMG-box domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -5.8   4.0         3   1.8e+04      55      67 ..     383     395 ..     373     424 .. 0.65
   2 !   40.6   0.3   4.7e-14   2.8e-10       3      70 ..     429     495 ..     427     498 .. 0.96

  Alignments for each domain:
  == domain 1  score: -5.8 bits;  conditional E-value: 3
                 HHHHHHHHHHHHH CS
   HMG_box_2  55 eekAkedkkrydr 67 
                 e++Ak+ k +++r
  KOO22735.1 383 EKEAKATKRAAER 395
                 5555555554443 PP

  == domain 2  score: 40.6 bits;  conditional E-value: 4.7e-14
                 -.-SS--HHHHHHHTTHHHHHHHT---SSHHHHTGGGHHHHHHS-HHHHHHHHHHHHHHHHHHHH-SS CS
   HMG_box_2   3 kpkaarnAYalfvqemipelkrkGnpviglaevsklcsekWkalseeeKekYeekAkedkkrydreal 70 
                  p+ + ++Y++f  e ++ l++   p   + +  kl +  Wkal e+eK+ Y +kA ed +ry +e+ 
  KOO22735.1 429 MPRKPHSSYLYFCDETREALRAA-HPDTSVPDLAKLQGAAWKALDESEKQVYMDKAAEDLERYTAEME 495
                 69999******************.******************************************96 PP

>> TMPIT  TMPIT-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.3   5.1    0.0016       9.8      25      97 ..     361     438 ..     338     441 .. 0.62

  Alignments for each domain:
  == domain 1  score: 5.3 bits;  conditional E-value: 0.0016
       TMPIT  25 leelsklqskcskeikkqkkrlkelksslkklkksvkeeeeeeveelkeelkerkkvlk.eves...llpkk.nglyl 97 
                  + ++++q +++ ++k+q k l++  ++ k+  +++++++++ ++++++e k++k+  +  +++    +p+k ++ yl
  KOO22735.1 361 AAAYHQQQMQLQMALKRQAKALEKEAKATKRAAERAERDQANSAKKVEKEEKKAKREAErAIKAelmKMPRKpHSSYL 438
                 455566666667777777777777777777777777777777777777766666665553333311134666666666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (741 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2337  (0.130347); expected 358.6 (0.02)
Passed bias filter:                      757  (0.0422221); expected 358.6 (0.02)
Passed Vit filter:                       121  (0.00674884); expected 17.9 (0.001)
Passed Fwd filter:                        27  (0.00150594); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.98u 0.30s 00:00:01.28 Elapsed: 00:00:00.47
# Mc/sec: 4768.08
//
Query:       KOO22736.1  [L=1279]
Description: leucine-rich repeat and iq domain-containing protein 3 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.9e-09   36.2   0.0    1.1e-08   34.8   0.0    1.7  1  LRR_9     Leucine-rich repeat
      8e-09   35.1   1.4    3.3e-08   33.2   1.4    2.2  1  LRR_8     Leucine rich repeat
      3e-05   24.3   3.1    9.2e-05   22.7   0.1    2.9  3  LRR_4     Leucine Rich repeats (2 copies)
  ------ inclusion threshold ------
      0.045   13.5  28.1      0.052   13.4   0.1    5.7  6  IQ        IQ calmodulin-binding motif


Domain annotation for each model (and alignments):
>> LRR_9  Leucine-rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.8   0.0   2.5e-12   1.1e-08      23     154 ..      26     159 ..       6     166 .. 0.86

  Alignments for each domain:
  == domain 1  score: 34.8 bits;  conditional E-value: 2.5e-12
       LRR_9  23 eldlrgykipvienlGatldqfdtidlsdndirkld..gfPllkrlktlllnnnrivriae.gleevlPnleelvltnnelqeladldPlaslkklell 118
                  ldlr   +  ++++G     +  + ls n  ++l    f    rlk l l+ n i+ + + ++   l +l  l l +n+l +l  l  l+ l+ +  l
  KOO22736.1  26 GLDLRELALNDVDEIGVCS-SLQVVLLSANLFQQLSpnAFFQCTRLKKLDLARNGITALPDrNIWGQLRELVVLYLHDNQLGSLHALGELVGLPMILRL 123
                 5889999999999999865.567777999999999621455567*************9965389999******************************** PP

       LRR_9 119 sllknpvtnkkeyrlyviyklkqlrlldfrkvklke 154
                 +  +np+++++ yr+y ++ l +lr ld + v  +e
  KOO22736.1 124 TAYDNPLAKHPSYRHYCVNSLISLRALDLHVVSDEE 159
                 ****************************99887665 PP

>> LRR_8  Leucine rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.2   1.4   7.4e-12   3.3e-08       1      61 []      44     105 ..      44     129 .. 0.96

  Alignments for each domain:
  == domain 1  score: 33.2 bits;  conditional E-value: 7.4e-12
                 TT-SEEE-TTS--SEE-TTSSTT-TT--EEE--SS---GGGGGGGTT.--S-.EEE--SS-- CS
       LRR_8   1 pnLtsLdLsnNrltslddeaFkglsnLkvLdLsnNllttlspgafsg.LpsLrsLdLsgNrL 61 
                 ++L+++ Ls N ++ l++ aF+++++Lk LdL +N +t l  + ++g L+ L  L+L +N+L
  KOO22736.1  44 SSLQVVLLSANLFQQLSPNAFFQCTRLKKLDLARNGITALPDRNIWGqLRELVVLYLHDNQL 105
                 589*************************************99888866************98 PP

>> LRR_4  Leucine Rich repeats (2 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.4   0.3      0.22   9.8e+02       3      40 ..      29      60 ..      27      63 .. 0.69
   2 !   22.7   0.1   2.1e-08   9.2e-05       1      39 [.      68     108 ..      68     113 .. 0.85
   3 ?   -2.5   0.0       1.8   7.9e+03      21      30 ..     143     152 ..     122     156 .. 0.62

  Alignments for each domain:
  == domain 1  score: 0.4 bits;  conditional E-value: 0.22
                --EEE--SS---E-S-HHH-TT--EEE-..-S-----GG CS
       LRR_4  3 LevLdLsnNqltdiplleklpnLkeLdL.sgNnlitdld 40
                L++L L++  + +i+    + +L+++ L s N l ++l+
  KOO22736.1 29 LRELALND--VDEIGV---CSSLQVV-LlSAN-LFQQLS 60
                55666666..777777...9*****8.53666.777776 PP

  == domain 2  score: 22.7 bits;  conditional E-value: 2.1e-08
                 SS--EEE--SS---E-S-HH...H-TT--EEE-.-S-----G CS
       LRR_4   1 pnLevLdLsnNqltdiplle...klpnLkeLdLsgNnlitdl 39 
                 ++L++LdL+ N +t +p  +   +l  L +L+L++N ++++l
  KOO22736.1  68 TRLKKLDLARNGITALPDRNiwgQLRELVVLYLHDN-QLGSL 108
                 68****************666656*********555.99988 PP

  == domain 3  score: -2.5 bits;  conditional E-value: 1.8
                 H-TT--EEE- CS
       LRR_4  21 klpnLkeLdL 30 
                 +l +L+ LdL
  KOO22736.1 143 SLISLRALDL 152
                 4888999988 PP

>> IQ  IQ calmodulin-binding motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.1      0.45     2e+03       5      13 ..     221     229 ..     220     236 .. 0.80
   2 ?   13.4   0.1   1.2e-05     0.052       1      18 [.     393     410 ..     393     411 .. 0.93
   3 ?   -2.8   0.2       1.9   8.4e+03       9      17 ..     540     548 ..     540     549 .. 0.87
   4 ?    5.0   0.7    0.0055        25       3      17 ..     606     620 ..     605     624 .. 0.82
   5 ?    5.9   2.8     0.003        13       2      20 ..     635     653 ..     634     654 .. 0.85
   6 ?    5.7   0.1    0.0034        15       3      20 ..     828     845 ..     827     846 .. 0.92

  Alignments for each domain:
  == domain 1  score: -0.9 bits;  conditional E-value: 0.45
                 HHHHHHHHH CS
          IQ   5 ikIQaawRG 13 
                 +k+Q+a R 
  KOO22736.1 221 LKLQSAARS 229
                 79*****97 PP

  == domain 2  score: 13.4 bits;  conditional E-value: 1.2e-05
                 HHHHHHHHHHHHHHHHHH CS
          IQ   1 rkaaikIQaawRGylaRk 18 
                 +kaa+  Qaa+RG++ R+
  KOO22736.1 393 EKAAVSVQAAVRGHVSRR 410
                 59***************9 PP

  == domain 3  score: -2.8 bits;  conditional E-value: 1.9
                 HHHHHHHHH CS
          IQ   9 aawRGylaR 17 
                 +++R+ l+R
  KOO22736.1 540 SYVRRQLVR 548
                 689****99 PP

  == domain 4  score: 5.0 bits;  conditional E-value: 0.0055
                 HHHHHHHHHHHHHHH CS
          IQ   3 aaikIQaawRGylaR 17 
                 a +++Q++wR   +R
  KOO22736.1 606 ATVTLQRVWRSIACR 620
                 789*******87666 PP

  == domain 5  score: 5.9 bits;  conditional E-value: 0.003
                 HHHHHHHHHHHHHHHHHHH CS
          IQ   2 kaaikIQaawRGylaRkry 20 
                 +a +++Q++wR +l++ r+
  KOO22736.1 635 RASTRMQRWWRWWLVKERL 653
                 799********99998765 PP

  == domain 6  score: 5.7 bits;  conditional E-value: 0.0034
                 HHHHHHHHHHHHHHHHHH CS
          IQ   3 aaikIQaawRGylaRkry 20 
                 aa +IQaa  +++ Rk +
  KOO22736.1 828 AASCIQAAALAMRSRKLF 845
                 9***************87 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1279 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1637  (0.0913046); expected 358.6 (0.02)
Passed bias filter:                      429  (0.0239277); expected 358.6 (0.02)
Passed Vit filter:                        53  (0.0029561); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.93u 0.28s 00:00:01.21 Elapsed: 00:00:00.47
# Mc/sec: 8212.57
//
Query:       KOO22737.1  [L=436]
Description: glycosyl hydrolase family 43 protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.1e-06   27.2   0.1      3e-06   26.8   0.1    1.3  1  Glyco_hydro_43  Glycosyl hydrolases family 43
  ------ inclusion threshold ------
      0.065   13.5   0.0       0.17   12.1   0.0    1.6  1  Ricin_B_lectin  Ricin-type beta-trefoil lectin domain


Domain annotation for each model (and alignments):
>> Glyco_hydro_43  Glycosyl hydrolases family 43
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.8   0.1   3.4e-10     3e-06      18     163 ..       3     153 ..       1     222 [. 0.78

  Alignments for each domain:
  == domain 1  score: 26.8 bits;  conditional E-value: 3.4e-10
                     ETTC.EEEEEEEBTEE.....SEEEEEEESSSSSCEEE..EECEESTTTCSTTTEECTEEEEEEEETTEEEEEEEEEETTCCCSEEEEEEESSTT CS
  Glyco_hydro_43  18 vged.yYlvtstfewf.....pglrifhSkdLvnWkqv..grvlerrsqlsmkgknasWAPeiskhdgkyylyytatkkgeakqgifvvtadspe 104
                     v+++ yYl+    +        ++++f+S+dL+ W+++   +++++++  +m++ ++      +    ky l +  +++g a ++++v+tad ++
      KOO22737.1   3 VEGGvYYLIGEGKKVLsgdisACFNLFSSTDLQAWNDIlaPPPFDKEPYYRMERPKL----MRNPTTKKYLLWFHCDTDGFAMRSVGVLTADAVT 93 
                     55664777766655448888899*************862266777777777776665....345788899999985566666666********** PP

                     S--EECEESSCS.TSSECEEEEEEET.....TSEEEEEEEEEHCCCSEEEEEEEEEETTTTEEEE CS
  Glyco_hydro_43 105 Gpwsdpiklkts.gssgiDpslfedd.....dGkkYlvwgqwdkreghseiylaeldddtlklkg 163
                     Gp++     +++ g+ + D ++f dd     dG +Yl+ +  +k        + +l++d++ ++ 
      KOO22737.1  94 GPFKFVTPCFRPdGQDSYDMGTFYDDpalggDGHAYLIRSVGNKY-----AGISQLTADWTGTTP 153
                     **********9999**********9855555799***99986665.....555666666666655 PP

>> Ricin_B_lectin  Ricin-type beta-trefoil lectin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   1.9e-05      0.17       6      76 ..     301     379 ..     296     414 .. 0.61

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 1.9e-05
                     EETTTGEEEEETTCTTSTEBEEEEE-TSCCGGGEEEEE..TTSEEEETT...TTEEEEES....SSSTTSBEEEEETTT CS
  Ricin_B_lectin   6 rnvasgkCLdvegeskagapvglydChgskgkQlwtlt..kdgeirska..qselCldvs....staegakvvlakChk 76 
                     ++v++g+C+++    ++ +++ l+ C+ ++  Q+w     + g + s    ++  C++ +    +   g++++ + C +
      KOO22737.1 301 THVTTGLCVSQSPDGANRGALELAACSAADPLQRWHAAggGSGAVTSTPhaRDAGCVSWNvanqQLVAGNPIIAYACGS 379
                     4456666666666655566666666666644466666633223333322445666665555554555566666666654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (436 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       225  (0.0125495); expected 358.6 (0.02)
Passed bias filter:                      178  (0.00992805); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.45u 0.24s 00:00:00.69 Elapsed: 00:00:00.40
# Mc/sec: 3277.68
//
Query:       KOO22738.1  [L=339]
Description: general transcription factor [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    6.4e-43  144.7   0.0    6.8e-21   74.1   0.0    2.5  2  Bromodomain  Bromodomain
    9.9e-09   35.3   0.0    1.9e-08   34.4   0.0    1.5  1  BET          Bromodomain extra-terminal - transcription regul
  ------ inclusion threshold ------
      0.092   12.3   0.1       0.14   11.7   0.1    1.3  1  Herpes_PAP   Herpesvirus polymerase accessory protein


Domain annotation for each model (and alignments):
>> Bromodomain  Bromodomain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   68.3   0.0   7.8e-23   4.7e-19       1      83 [.      29     113 ..      29     114 .. 0.97
   2 !   74.1   0.0   1.1e-24   6.8e-21       1      78 [.     144     223 ..     144     229 .. 0.93

  Alignments for each domain:
  == domain 1  score: 68.3 bits;  conditional E-value: 7.8e-23
                  HHHHHHHBHTTTCGGGGCSTT..-GCCSTTHHHH.SS---HHHHHHHHHTT--SSHHHHHHHHHHHHHHHHHHSHTTSHHHHHHH CS
  Bromodomain   1 lekilsellehklaepFlepv..dpeefpdyyavikkPldLstIkkklesnkYksladfeadlkllfsNarkyngegsviyelae 83 
                  ++++++ l++++   +F++pv  ++  + dy++ ik+P+dL t+ ++l++ +Y++l+ f +d++l+++Na  +n ++s ++++a+
   KOO22738.1  29 CDALVKSLMKRSQGVHFSRPVewKKFGLVDYPKLIKEPMDLGTVSENLQKPHYERLESFINDVRLVWKNAFIFNAPDSMYFKAAK 113
                  88999****************9888899******************************************************997 PP

  == domain 2  score: 74.1 bits;  conditional E-value: 1.1e-24
                  HHHHHHHBHTTTCGGGGCSTT..-GCCSTTHHHH.SS---HHHHHHHHHTT--SSHHHHHHHHHHHHHHHHHHSHTTSHH CS
  Bromodomain   1 lekilsellehklaepFlepv..dpeefpdyyavikkPldLstIkkklesnkYksladfeadlkllfsNarkyngegsvi 78 
                  ++ +l+++ +++++e+F+ep+     ++ dy++vi++P+dL t++kk e+++Y s++df +d++l+++Na++yn  +s i
   KOO22738.1 144 CQLLLEDMRKNPFSEWFREPLdhVALQLHDYPQVISQPMDLGTVHKKMERSQYMSVEDFAHDVRLIWQNAITYNSAQSFI 223
                  566899***************8888899***********************************************99977 PP

>> BET  Bromodomain extra-terminal - transcription regulation
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.4   0.0   3.1e-12   1.9e-08       3      58 ..     261     318 ..     259     324 .. 0.90

  Alignments for each domain:
  == domain 1  score: 34.4 bits;  conditional E-value: 3.1e-12
         BET   3 tyeeKkeLseeInkLpgeklgrvveIIqere..pelqsdedEiElDidaldddtLreL 58 
                 t+++Kk++ + +++L+  +l+++v ++q+ +  + +q +++E+E+D+d+ld +t+   
  KOO22738.1 261 TFQQKKKFYDLCTRLTLADLNQMVSLVQRGCqaAVQQCGDKEVEVDVDELDMETFQNV 318
                 9*******************************66656*****************9765 PP

>> Herpes_PAP  Herpesvirus polymerase accessory protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.1   2.3e-05      0.14       4      59 ..     278     336 ..     275     339 .] 0.82

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 2.3e-05
  Herpes_PAP   4 sdtnteasvacvhGqevvresersalrvd...ldfsvvadllkwlspvtkvkrsvkkda 59 
                 +d+n  +s      q  v++++   ++vd   ld  +  ++lkw + +tk  ++ k++a
  KOO22738.1 278 ADLNQMVSLVQRGCQAAVQQCGDKEVEVDvdeLDMETFQNVLKWANSKTKSAQQPKSEA 336
                 677777777777789999999999999984456799***************99999886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (339 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       814  (0.0454013); expected 358.6 (0.02)
Passed bias filter:                      665  (0.0370907); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.49u 0.28s 00:00:00.77 Elapsed: 00:00:00.42
# Mc/sec: 2401.36
//
Query:       KOO22739.1  [L=428]
Description: hypothetical protein Ctob_001795 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.093   13.0   0.0      0.093   13.0   0.0    3.9  4  Rx_N        Rx N-terminal domain
       0.15   11.7   0.2       0.45   10.2   0.2    1.8  1  Vac_Fusion  Chordopoxvirus multifunctional envelope protein A


Domain annotation for each model (and alignments):
>> Rx_N  Rx N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.2   2.1       0.1   9.4e+02      47      81 ..      94     128 ..      59     141 .. 0.65
   2 ?    0.4   0.1     0.091   8.2e+02      26      43 ..     157     174 ..     132     202 .. 0.52
   3 ?   13.0   0.0     1e-05     0.093      17      53 ..     314     352 ..     299     359 .. 0.87
   4 ?   -1.5   0.0      0.34     3e+03      23      44 ..     397     418 ..     377     421 .. 0.72

  Alignments for each domain:
  == domain 1  score: 0.2 bits;  conditional E-value: 0.1
        Rx_N  47 rqikdeavkeWlkelrdlaydaeDvlDefetealr 81 
                  + ++ ++ +  +e +++a  +e  lD  +  a+r
  KOO22739.1  94 AEVEHAEATAITREAKEVAEAMEAQLDLARASAAR 128
                 23345556667777888888888777777666665 PP

  == domain 2  score: 0.4 bits;  conditional E-value: 0.091
        Rx_N  26 eleklkdeLesiqavLed 43 
                  l + k++Les+q  L+ 
  KOO22739.1 157 ALSRFKSRLESLQYELSS 174
                 344444555554444432 PP

  == domain 3  score: 13.0 bits;  conditional E-value: 1e-05
        Rx_N  17 a..kllkgvkeeleklkdeLesiqavLedaeerqikdea 53 
                 +  ++++g ++e+++l++eL+  +  L+ a+ +q++ ++
  KOO22739.1 314 YkiTMVQGTQSEVRWLRRELREARDELHSASGQQQRTQS 352
                 344899**************************9998766 PP

  == domain 4  score: -1.5 bits;  conditional E-value: 0.34
        Rx_N  23 vkeeleklkdeLesiqavLeda 44 
                 + +el  l  e+++++a ++++
  KOO22739.1 397 FVDELAALDAEMRALNASIDQV 418
                 5688889999999999988876 PP

>> Vac_Fusion  Chordopoxvirus multifunctional envelope protein A27
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.2   5.1e-05      0.45      12      43 ..     165     196 ..     157     200 .. 0.84

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 5.1e-05
                 HHHHHHHHHHHHHHHHHHHHHHH-XXXXXXXX CS
  Vac_Fusion  12 lekdfqlvikcckrvnealkRlEnHleTlRka 43 
                 le +  ++ ++  rv+e+ +Rl + +eTlR+ 
  KOO22739.1 165 LESLQYELSSRATRVAERFERLSRLAETLRRE 196
                 5666667888999*****************95 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (428 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2065  (0.115177); expected 358.6 (0.02)
Passed bias filter:                      612  (0.0341346); expected 358.6 (0.02)
Passed Vit filter:                        60  (0.00334653); expected 17.9 (0.001)
Passed Fwd filter:                        16  (0.000892409); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.78u 0.30s 00:00:01.08 Elapsed: 00:00:00.47
# Mc/sec: 2751.06
//
Query:       KOO22740.1  [L=430]
Description: hypothetical protein Ctob_001794 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
     0.0016   18.4   0.1     0.0034   17.3   0.1    1.5  1  PCRF        PCRF domain
  ------ inclusion threshold ------
      0.037   14.4   1.0       0.07   13.6   1.0    1.4  1  IATP        Mitochondrial ATPase inhibitor, IATP
      0.045   13.7   0.4        0.1   12.6   0.4    1.6  1  Taq-exonuc  Taq polymerase, exonuclease
       0.11   12.3   1.2       0.16   11.7   1.2    1.2  1  Cwf_Cwc_15  Cwf15/Cwc15 cell cycle control protein


Domain annotation for each model (and alignments):
>> PCRF  PCRF domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   0.1   7.5e-07    0.0034      72     123 ..     138     188 ..      84     189 .. 0.66

  Alignments for each domain:
  == domain 1  score: 17.3 bits;  conditional E-value: 7.5e-07
                 THHHHHHHHHH..HHHHHT-..SSSTTSEEEEEEEE-SSTHHHHHHHHHHHH CS
        PCRF  72 leelekeleeleeelkklLlpkdendeknaileiraGaGGdeaalfaedLlr 123
                 l+    +++  e++  + Ll +d++d++++i  i aG G +ea+l++ed lr
  KOO22740.1 138 LSGHGVHVRLREDQPLSALL-EDPTDDSPVIAHIAAGDGESEACLWVEDALR 188
                 33333344444445555555.6*************************99765 PP

>> IATP  Mitochondrial ATPase inhibitor, IATP
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   1.0   1.6e-05      0.07      34      92 ..      85     141 ..      71     146 .. 0.82

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 1.6e-05
        IATP  34 GapkgtGggGsireagdafgkrEaAsEeeyirqrekekLaeLkeklaeq.keHleeleeH 92 
                  a k  G+ G   +++d+f   E A+Ee ++ ++++ +L++++e+++    +  ++l+ H
  KOO22740.1  85 RAKKANGA-GEDGDESDSFD--EDADEEAFMARMRAARLEQMREQMRATaGTTAQRLSGH 141
                 56666666.77788999996..9***********************99978999999998 PP

>> Taq-exonuc  Taq polymerase, exonuclease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.4   2.3e-05       0.1      35     116 ..     105     191 ..      86     204 .. 0.81

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 2.3e-05
  Taq-exonuc  35 daevaraaarvdlaeleglrevtavaAKaLavhlsvrGvvvePGdDPlLlAYLlDpantnpalvarrylaee.....WpedaatRAl 116
                 da +++  ar+ +a le++re   ++A   a  ls +Gv+v+  +D  L A L Dp+   p ++  + +++e     W eda  RA+
  KOO22740.1 105 DADEEAFMARMRAARLEQMREQMRATAGTTAQRLSGHGVHVRLREDQPLSALLEDPTDDSPVIAHIAAGDGEseaclWVEDALRRAA 191
                 444555555677999*****99999********************************999877666655554446669999999996 PP

>> Cwf_Cwc_15  Cwf15/Cwc15 cell cycle control protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   1.2   3.6e-05      0.16     112     172 ..      65     134 ..       6     145 .. 0.63

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 3.6e-05
                 ---------------.........-----...----------------------------------------- CS
  Cwf_Cwc_15 112 daddedseeeeeeee.........eesdd...dsdsdsdddddedetaeLlrELekikreraeekerkereka 172
                 d+d+ d e+ e++           +   +   ++ ++sd+ d++ ++++ ++ +   + e++ e+ r ++  +
  KOO22740.1  65 DEDEVDGESGETDAAgdpsirakkA---NgagEDGDESDSFDEDADEEAFMARMRAARLEQMREQMRATAGTT 134
                 4444444433333335555664322...244567777777778889999999999999999999998877655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (430 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       587  (0.0327403); expected 358.6 (0.02)
Passed bias filter:                      410  (0.022868); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.53u 0.26s 00:00:00.79 Elapsed: 00:00:00.44
# Mc/sec: 2911.33
//
Query:       KOO22741.1  [L=288]
Description: DNA-(apurinic or apyrimidinic site) lyase-like protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    6.7e-05   22.5   1.0    0.00013   21.6   1.0    1.4  1  Exo_endo_phos  Endonuclease/Exonuclease/phosphatase family


Domain annotation for each model (and alignments):
>> Exo_endo_phos  Endonuclease/Exonuclease/phosphatase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.6   1.0   7.2e-09   0.00013      30     215 ..       4     268 ..       2     284 .. 0.68

  Alignments for each domain:
  == domain 1  score: 21.6 bits;  conditional E-value: 7.2e-09
                    TTSEEEEEEEBSCTCHHHHHHHHH............................TTCEEEEECCH.....ECSSSTTSSEEEEEECSTEEEE.EEEEE CS
                    xxxxxxxxxxxxxxxxxxxxxxxx............................xxxxxxxxxxx.....xxxxxxxxxxxxxxxxxxxxxx.xxxxx RF
  Exo_endo_phos  30 daDvlgLQEvdddelsriplllal............................ggflgasstsp.....tgggggggnggavlsrfpltsl.frrtf 91 
                     +Dv+++ Ev++ ++  +     +                                               + +++ g+++l+r    +  ++r+ 
     KOO22741.1   4 APDVVFISEVRMPAAGPPGCKKGDgkprrqsemargtpaqskeadaiadfvrS---------AgyrayWSLAEYKYSGCGLLVRKDRAQPlEVRYS 90 
                    68999999977777666433333355555555555555555555555555552.........04444455899**************555033333 PP

                    EETSSSSGCEEEEEEEEEEEEEEE...........................CCCHHGHHHHHHHHHHHHHHHHHHHHHTTSEEEEEEE-SSSTSGG CS
                    xxxxxxxxxxxxxxxxxxxxxxxx...........................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Exo_endo_phos  92 iefndlvaalrreplaakleqlni...........................ashrdhdlvrdlqllalllqvealnadrgapvivaGDfNarpsdd 160
                     +                                                 + + ++  + ++++++++     l a+r +p+++ GD+N+     
     KOO22741.1  91 LDA--------------------AapagrhhpegrvilahfahlellgtyvPNNGSNEASFERRRQWEVELDSLLCAPRERPLVWIGDLNV----- 161
                    333....................033333333333344444456999999*****************************************..... PP

                    GBSCGHHHHHHCTTTH...................................H...........................SSCESCETTTTTTTTTT CS
                    xxxxxxxxxxxxxxxx...................................x...........................xxxxxxxxxxxxxxxxx RF
  Exo_endo_phos 161 dsrvlrtrglalapap...................................v...........................glyllgggptptyvtra 194
                          ++g                                          +                            +  +g ++ +  ++ +
     KOO22741.1 162 ------AAGW-----HdvgpdpswfrnqngtdaahpddrgqpgftaneqarFartlerarmidayrclwpepdwqrdvtWRGAPGVNIPAEGRYYN 246
                    ......2222.....233334677777776666777777666666555555055555555666666667777778888888888888888888889 PP

                    TEB-BEEEEEEC.HHHCCEEEE CS
                    xxxxxxxxxxxx.xxxxxxxxx RF
  Exo_endo_phos 195 ggsrlDrilasp.alalfrsgv 215
                     g+r+D+ ++   +++++r++v
     KOO22741.1 247 KGMRIDYCIVPReGVRVVRALV 268
                    9999999999988888888877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (288 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       222  (0.0123822); expected 358.6 (0.02)
Passed bias filter:                      191  (0.0106531); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.23s 00:00:00.69 Elapsed: 00:00:00.42
# Mc/sec: 2063.55
//
Query:       KOO22742.1  [L=1010]
Description: valyl-tRNA synthetase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
     3e-190  633.5   0.0   3.2e-189  630.1   0.0    1.9  1  tRNA-synt_1      tRNA synthetases class I (I, L, M and V)
    4.9e-38  130.5   0.0    9.8e-38  129.5   0.0    1.4  1  Anticodon_1      Anticodon-binding domain of tRNA
      2e-13   49.9   0.0    1.1e-05   24.3   0.1    4.0  4  tRNA-synt_1g     tRNA synthetases class I (M)
    9.5e-10   38.3   0.0    1.5e-05   24.6   0.0    2.4  2  tRNA-synt_1_2    Leucyl-tRNA synthetase, Domain 2
      6e-08   32.9   1.7    8.1e-08   32.4   0.2    2.0  2  Val_tRNA-synt_C  Valyl tRNA synthetase tRNA binding arm
    0.00035   20.0   0.0       0.44    9.8   0.0    2.5  2  tRNA-synt_1e     tRNA synthetases class I (C) catalytic domai
  ------ inclusion threshold ------
      0.041   12.8   0.1      0.093   11.6   0.0    1.5  2  tRNA-synt_1c     tRNA synthetases class I (E and Q), catalyti


Domain annotation for each model (and alignments):
>> tRNA-synt_1  tRNA synthetases class I (I, L, M and V)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  630.1   0.0  1.3e-192  3.2e-189       2     602 .]      50     667 ..      49     667 .. 0.96

  Alignments for each domain:
  == domain 1  score: 630.1 bits;  conditional E-value: 1.3e-192
  tRNA-synt_1   2 lyekWeeedvfkkelekekekkefilvdgPPyvtGslHiGhalaktlkdivirykrmkGkevlyvpGwDhaGlaieakvekklgakekkerkklgree 99 
                  + ++We+++++ ++ + e+++++f++  +PP+vtG+lH+Ghal+ +++ +++r++rm+G++vl+ pG+DhaG+a++ +vek l ++++ +r+++gre+
   KOO22742.1  50 WNDWWEASGYYLASSDPEDNRPKFSICLPPPNVTGALHLGHALTVAVQYLLCRWHRMRGYNVLWIPGTDHAGIATQVVVEKLLKKSGQPNRHEMGREA 147
                  679***********99999******************************************************************************* PP

  tRNA-synt_1 100 frekvrewkaeyaeeirkqvkrlGvsvDfdreylTldkeleeavkevfvrladkgliyrgkklvnwstklktalselEveykdkk............. 184
                  f++kv ewk++y ++i +q++r+G s+D++re +T+d+    +v+ +f +++++ +iyr  +l nw+ +l++++s+lEv+++  +             
   KOO22742.1 148 FVAKVYEWKDKYGNKIYSQMRRMGCSLDWSREVFTMDPPRARSVQAAFLQFHKDKVIYRDVRLTNWCCALQSVISNLEVDQEPITkrtkrkvpghkfd 245
                  *******************************************************************************8888778899********* PP

  tRNA-synt_1 185 ....dalihvafpladkeevklviaTTtPeTllgdtavavnpeldyvitkeklilaeallkslvkkesekkiledergkeLegkevelplvnrkipii 278
                      ++++++a+++++++e ++v+aTT+PeT+lgdtavav+p+                               d+r+k+L+g+++ +p+v rkipi+
   KOO22742.1 246 syvfGVIWSFAYKVEGSDE-EVVVATTRPETMLGDTAVAVHPD-------------------------------DPRYKQLHGRFLVHPFVPRKIPIV 311
                  *******************.***********************...............................************************ PP

  tRNA-synt_1 279 ad.dyvdkeaGtGvVkiaPahdedDyevgkkynlevinildedgtlteeaaefeglkvfdarkkvveelkekglllkaekiehsvpfcerskkpiiyr 375
                  +d   vd+ +GtG+Vk++Pahd++D++ g++++le i+i +++g++  ++++feg+ +fdar +v+++lk+ gl+  ++++ +++p+c+r++++i++ 
   KOO22742.1 312 TDaVLVDMSFGTGAVKVTPAHDPNDFKCGRRNGLEEITIFTDEGQMAANCGQFEGMMRFDARVAVLKALKDLGLFRGEQDNAMTIPICSRTGDIIEPV 409
                  **557********************************************************************************************* PP

  tRNA-synt_1 376 ateqWfvrvkeladaalkave..kvqfvpkskekryaswleniqdWciSRqrwWGhriplfvsketeevvvreelkelvagreeeeaekkalekeakd 471
                  +++qW+v  + +a+ a +av+  + ++ pk +ek ++++l niqdWc+SRq+wWGhrip++++k  + v v      +va++ e ea+++al+++   
   KOO22742.1 410 LKPQWWVDCTGMAKRAADAVRngELTILPKEAEKVWFHFLDNIQDWCVSRQLWWGHRIPAYFAKVDG-VDV----GVHVAAT-EAEAREAALKEH--- 498
                  *********************999***************************************9977.444....4455533.333344443322... PP

  tRNA-synt_1 472 klkkekgelekdedvlDvWFsSgswpfstlgypeedteelkkffpadmlleGlDiirgWvarlillslaltgsePfkevlvhglvrdeeGrKmSKslg 569
                    + e+ +l++dedvlD+WFsSg+ pfs lg+p++ + +l+  +p+++l++G Di+++Wvar++++sl+lt++ Pf++v++h++vrd+ GrKmSKslg
   KOO22742.1 499 GCRPEQLTLTQDEDVLDTWFSSGLFPFSCLGWPDQSSADLQAWHPTSLLETGQDILFFWVARMVMCSLQLTNKLPFTTVYLHSMVRDKYGRKMSKSLG 596
                  2355666******************************************************************************************* PP

  tRNA-synt_1 570 Nvidpldvik.....................................kygadalRltli.lsdvgrdinls 602
                  Nvidpl+vi+                                     ++g dalR+ l+    vgrdinl+
   KOO22742.1 597 NVIDPLEVIEgvsldalcaklregnlaeaevakaeemnqkeypqgipECGSDALRFGLLaHVGVGRDINLD 667
                  ********************************************************99989999****986 PP

>> Anticodon_1  Anticodon-binding domain of tRNA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  129.5   0.0   3.8e-41   9.8e-38       1     138 [.     713     859 ..     713     872 .. 0.87

  Alignments for each domain:
  == domain 1  score: 129.5 bits;  conditional E-value: 3.8e-41
  Anticodon_1   1 drwilselnklvkevteayeeyrfnkaasalyeffwndlcdwylelvkprlysesaedk....ra.aqevllevletllrllaPfmPfitEelwqree 93 
                  d+wils+l+k+v+++++ +++y+++ aa a+y f++n lcd+yle++kp ++ +sae++    +  +q+vl+ +l+ +lrll+PfmP +tEel++r +
   KOO22742.1 713 DKWILSKLAKTVETMDKLLKDYQISLAAEAIYAFWYNCLCDVYLEAIKPVMQLDSAEPAnaatKHaTQTVLHACLSYGLRLLHPFMPMVTEELYHRLA 810
                  9******************************************************9999999955699**************************9955 PP

  Anticodon_1  94 eelgkk.esimlaewpekaeel....ekeleeeevellkeivkairklrs 138
                   + g++ +++mla++pe a+       +++ ee +e l +i  air+lr+
   KOO22742.1 811 LLCGQPrSTVMLAKYPEPADAVgalrSAAA-EETMETLMKIGGAIRALRA 859
                  5556665999******74433345543333.99****9999999999996 PP

>> tRNA-synt_1g  tRNA synthetases class I (M)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.3   0.1   4.5e-09   1.1e-05       8      58 ..      80     130 ..      73     229 .. 0.89
   2 !   10.0   0.0    0.0001      0.26     183     241 ..     413     471 ..     391     478 .. 0.75
   3 !   10.2   0.0   8.5e-05      0.22     310     350 ..     572     613 ..     542     626 .. 0.73
   4 ?   -2.1   0.0      0.47   1.2e+03     344     370 ..     644     670 ..     634     680 .. 0.86

  Alignments for each domain:
  == domain 1  score: 24.3 bits;  conditional E-value: 4.5e-09
                   B--SS---HHHHHHHHHHHHHHHHHHHTT-EEEEEEEE---SHHHHHHHHH CS
  tRNA-synt_1g   8 pYangklHlGhllevisaDifaRykrlrgeevlfvcgtDehGtpielkAek 58 
                   p ++g+lHlGh+l+v     ++R++r+rg++vl++ gtD+ G+++++  ek
    KOO22742.1  80 PNVTGALHLGHALTVAVQYLLCRWHRMRGYNVLWIPGTDHAGIATQVVVEK 130
                   67899********999999************************99987665 PP

  == domain 2  score: 10.0 bits;  conditional E-value: 0.0001
                   EEEE-GGGGHHHHHHHH.HH-TT.SHHHHHHHH.HHHHT----EE-ESS-SSS-EETTEC CS
  tRNA-synt_1g 183 hlffklskfekklkewieeeeke.leenvkkivkewlkegLkdlaisrdldwGipvPgae 241
                   +++ +   ++k+  + +++ e + l+++++k+  ++l++ ++d+++sr+l wG ++P   
    KOO22742.1 413 QWWVDCTGMAKRAADAVRNGELTiLPKEAEKVWFHFLDN-IQDWCVSRQLWWGHRIPAYF 471
                   566666666666667775555556889999999999999.*****************654 PP

  == domain 3  score: 10.2 bits;  conditional E-value: 8.5e-05
                   ---S-EEEE--EE.E--------------HHHHHHHH-HHHH CS
  tRNA-synt_1g 310 klpkkvvaheylt.vegkKlSkSrgvvvkakealerldadll 350
                      ++v+ h+++    g+K+SkS g+v+++ e++e ++ d+l
    KOO22742.1 572 LPFTTVYLHSMVRdKYGRKMSKSLGNVIDPLEVIEGVSLDAL 613
                   33467788888762579******************9999987 PP

  == domain 4  score: -2.1 bits;  conditional E-value: 0.47
                   HH-HHHHHHHHHHHS-TTS-EEE-HHH CS
  tRNA-synt_1g 344 rldadllRYylaaeapekkDldfswed 370
                   ++ +d+lR+ l+a+    +D+++  + 
    KOO22742.1 644 ECGSDALRFGLLAHVGVGRDINLDVQA 670
                   5789*****************998776 PP

>> tRNA-synt_1_2  Leucyl-tRNA synthetase, Domain 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.6   0.0   5.6e-05      0.14      12      50 ..     255     293 ..     251     297 .. 0.90
   2 !   24.6   0.0     6e-09   1.5e-05      86     145 ..     296     356 ..     293     375 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 5.6e-05
  tRNA-synt_1_2  12 iefkveeseeklevfttrpdtlfGvtfvalapehplvek 50 
                    + +kve+s+e++ v ttrp+t+ G t va+ p+ p  ++
     KOO22742.1 255 FAYKVEGSDEEVVVATTRPETMLGDTAVAVHPDDPRYKQ 293
                    6799****************************9997766 PP

  == domain 2  score: 24.6 bits;  conditional E-value: 6e-09
  tRNA-synt_1_2  86 glkaihPitgekipiwvanyvl..meygtgavmavPahdqrDfeFakkynlpikqvikpede 145
                    g + +hP+  +kipi v++ vl  m++gtgav   Pahd +Df+  ++ +l+ +++ + e++
     KOO22742.1 296 GRFLVHPFVPRKIPI-VTDAVLvdMSFGTGAVKVTPAHDPNDFKCGRRNGLEEITIFTDEGQ 356
                    7789**********9.56666645889**********************9998888876655 PP

>> Val_tRNA-synt_C  Valyl tRNA synthetase tRNA binding arm
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.1       4.2   1.1e+04       8      25 ..     719     736 ..     717     741 .. 0.60
   2 !   32.4   0.2   3.1e-11   8.1e-08       1      60 [.     941    1000 ..     941    1004 .. 0.94

  Alignments for each domain:
  == domain 1  score: -3.2 bits;  conditional E-value: 4.2
  Val_tRNA-synt_C   8 RLeKeLaklekeiervqk 25 
                      +L K+ + ++k ++  q 
       KOO22742.1 719 KLAKTVETMDKLLKDYQI 736
                      566666666666666655 PP

  == domain 2  score: 32.4 bits;  conditional E-value: 3.1e-11
  Val_tRNA-synt_C    1 DvekeraRLeKeLaklekeiervqkKLanpgFveKAPaeVVeeekaklaeleeqaeklke 60  
                       D+ ke++RL+Ke+a +++ +++v kK a p++ eK P++ ++e  ak + ++++   l++
       KOO22742.1  941 DFSKEVQRLKKEIASVQGFLDKVLKKVAAPSYYEKCPQATIDEDAAKIEGYKSELVTLQK 1000
                       789************************************************998877766 PP

>> tRNA-synt_1e  tRNA synthetases class I (C) catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.4   0.0   0.00094       2.4      16      51 ..      79     114 ..      66     263 .. 0.87
   2 !    9.8   0.0   0.00017      0.44     235     276 ..     572     613 ..     546     627 .. 0.77

  Alignments for each domain:
  == domain 1  score: 7.4 bits;  conditional E-value: 0.00094
                   EEBTTS--BHHHHHHHHHHHHHHHHHHHTT-EEEEE CS
  tRNA-synt_1e  16 GptvydashlGhaRslvafDilrrilqalgYdvqfv 51 
                    p v  a hlGha ++ +  +l r+ +++gY+v ++
    KOO22742.1  79 PPNVTGALHLGHALTVAVQYLLCRWHRMRGYNVLWI 114
                   578999***************************998 PP

  == domain 2  score: 9.8 bits;  conditional E-value: 0.00017
                   S--EEEEEEE--EEETTBE--TTTT---BHHHHHTTS-HHHH CS
  tRNA-synt_1e 235 kqlvkyflhnghlkiegekmsksLknfitikdvlkkfdprql 276
                    +++  +lh+ +    g+kmsksL+n+i   +v++ ++  +l
    KOO22742.1 572 LPFTTVYLHSMVRDKYGRKMSKSLGNVIDPLEVIEGVSLDAL 613
                   6788999**9999999************98888887766655 PP

>> tRNA-synt_1c  tRNA synthetases class I (E and Q), catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   3.6e-05     0.093       7      32 ..      79     104 ..      78     127 .. 0.83
   2 ?   -3.9   0.0         2     5e+03     258     289 ..     153     184 ..     148     188 .. 0.78

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 3.6e-05
                   ---SSSS-BHHHHHHHHHHHHHHHHT CS
  tRNA-synt_1c   7 aPePtGyLHiGhakaallnylfAknn 32 
                   +P+ tG LH+Gha ++ + yl+ + +
    KOO22742.1  79 PPNVTGALHLGHALTVAVQYLLCRWH 104
                   89*******************99865 PP

  == domain 2  score: -3.9 bits;  conditional E-value: 2
                   SSSTT-TTSCBHHHHHHCTB-HHHHHHHHHHH CS
  tRNA-synt_1c 258 vkewddlreallnflrrlGwtpekerelftre 289
                   ++ +d     + + +rr+G +    re+ft++
    KOO22742.1 153 YEWKDKYGNKIYSQMRRMGCSLDWSREVFTMD 184
                   55556667778899999999999999999985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1010 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       518  (0.0288917); expected 358.6 (0.02)
Passed bias filter:                      488  (0.0272185); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.78u 0.27s 00:00:01.05 Elapsed: 00:00:00.56
# Mc/sec: 5466.90
//
Query:       KOO22743.1  [L=639]
Description: xanthine phosphoribosyltransferase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    7.4e-11   41.8   0.0    1.7e-10   40.7   0.0    1.6  1  Pribosyltran  Phosphoribosyl transferase domain


Domain annotation for each model (and alignments):
>> Pribosyltran  Phosphoribosyl transferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.7   0.0   9.3e-15   1.7e-10      12     129 ..     442     565 ..     437     595 .. 0.90

  Alignments for each domain:
  == domain 1  score: 40.7 bits;  conditional E-value: 9.3e-15
                   EEEEEETTEEEEEE--GGGEEEEEEETTTHHHHHHHHHHSTT-EE-EEEEEE-TTT--EE................EE----TTSEEEEE-SEESSS CS
  Pribosyltran  12 ldavarlaaeileeyngkpdvvvgiargGvpfakiladeLevplayvrkvkyrpdgseeaargssdes........rlledpagkkVliVDDildtG 100
                   ++a+ + +ae+le+   +p+ v+++++ G++++  + ++L++p+++ rk++  + + + ++   s           + + ++ g +V+i+DD+l+ G
    KOO22743.1 442 MEACGEELAERLED--TQPTKVLTVESTGLIPGMFVGKALTLPVVFARKSRQIGVSDSYQTSYKSSTKansqdlyvSIEYLTPGDRVIIIDDFLAGG 536
                   56777778888888..8*********************************999988888876655555889************************** PP

                   HHHHHHHHHHHCC-BSEEEEEEEEE-HHH CS
  Pribosyltran 101 gTllaalelLkekgpeevriavlvdkpat 129
                   +T  a ++l + +g+ +v++  l++k+ +
    KOO22743.1 537 TTADALIRLCRMAGANVVGAGFLIEKSND 565
                   ***********************988765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (639 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       583  (0.0325172); expected 358.6 (0.02)
Passed bias filter:                      499  (0.027832); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.59u 0.29s 00:00:00.87 Elapsed: 00:00:00.43
# Mc/sec: 4428.65
//
Query:       KOO22744.1  [L=464]
Description: protease do-like mitochondrial-like protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.3e-25   91.0   0.6    2.6e-25   90.1   0.6    1.5  1  Trypsin_2      Trypsin-like peptidase domain
    1.1e-17   64.3   0.0    1.6e-17   63.7   0.0    1.2  1  PDZ_3          PDZ domain
    1.2e-12   48.1   0.0    1.9e-12   47.4   0.0    1.2  1  Trypsin        Trypsin
     0.0028   16.4   0.8      0.013   14.2   0.8    1.8  2  Peptidase_S46  Peptidase S46


Domain annotation for each model (and alignments):
>> Trypsin_2  Trypsin-like peptidase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   90.1   0.6   5.8e-29   2.6e-25       1     150 []      49     196 ..      49     196 .. 0.92

  Alignments for each domain:
  == domain 1  score: 90.1 bits;  conditional E-value: 5.8e-29
   Trypsin_2   1 GsGflvgsdglilTnaHvvdsadgaavkaikkkveeagadgrevpakvvaadpelDlAllkv...ssderaglpplplgpsealkggepvyvvGyplgg 96 
                 G+Gflv+++  ilTn+Hv+++a + +         + + + ++ +a+vva  p+ DlA l+v   +++  a+l p+ ++ + ++ ++ +v+v Gyplgg
  KOO22744.1  49 GTGFLVDGRR-ILTNHHVIENAVDIRL--------SKTGNSKRWRARVVAMGPDVDLAALEVienADEFFADLTPVAWSYELPPLQS-RVTVRGYPLGG 137
                 9*********.****************........8999***********************8877777788889999998899999.*********** PP

   Trypsin_2  97 eksgsvssGivsgvve.....sesaasgegesfl.qtdaatspGsSGGplfdsdGrvvGl 150
                 + + sv++G+vs+v+      +++++  +g+s++ q daa+++G+SGGp fd+  rv+G+
  KOO22744.1 138 NAQ-SVTEGVVSRVDCknyrlGATSSISPGRSLVvQIDAAINGGNSGGPAFDASNRVIGV 196
                 ***.************9**9966666677777777************************8 PP

>> PDZ_3  PDZ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.7   0.0   3.6e-21   1.6e-17       3     122 ..     332     460 ..     330     463 .. 0.83

  Alignments for each domain:
  == domain 1  score: 63.7 bits;  conditional E-value: 3.6e-21
       PDZ_3   3 thlydkrPsYliygGlVFvpLsqpyleeqgkdwakkapirlldr...alygileeedqevvlLsqvLa.selntGyenianlqlkkvNgtkvknLkhLa 97 
                  h +d++P+++i+gGlVF pL+ p++e+ ++   ++  ++++ r   a++g+ +e+ +evv+L  vL+  ++n+Gye      l+++Ng+ v++L+ L+
  KOO22744.1 332 WHDFDCTPEWVIIGGLVFSPLTAPLIEDASSGGVRSYVHDIFTRevgAKNGFNTEPAREVVVLLDVLNgGDVNHGYEAEGWKVLTHLNGQAVESLAGLY 430
                 699*************************9555555555555553233899*****************7369*****99999999*************** PP

       PDZ_3  98 klleaske...dfvefel..ekdkiivLda 122
                  l ++++    +f+ef +   ++++ivL++
  KOO22744.1 431 FLWQQATRdgaAFLEFGFggGTERKIVLEQ 460
                 999998875667899988545589999986 PP

>> Trypsin  Trypsin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.4   0.0   4.3e-16   1.9e-12       9     207 ..      34     209 ..      28     221 .. 0.76

  Alignments for each domain:
  == domain 1  score: 47.4 bits;  conditional E-value: 4.3e-16
                 TTSSTTEEEEEETTCEEEEEEEEEETTEEEEEGGGTTTGGGEEEEESESBTTSCTTTEEEEEEEEEEEETTEBTTTTTTTEEEEEESSS.STSBSSBHC CS
     Trypsin   9 kgsfpwqvslsvksgkhlCgGslisenwvlTAaHCvsnasdvkvvlgehnlkksegkeqklkvekvivhpnynpstldnDiallklkep.vklgdtvrp 106
                  + +pw  + + ++g    +G+l++ + +lT++H+++n  +v+++l++       +++ k+  ++v+    ++p+    D+a l++ e+  ++     p
  KOO22744.1  34 SYMRPWEKAAQQRQG---GTGFLVDGRRILTNHHVIEN--AVDIRLSK-------TGNSKRWRARVVA---MGPDV---DLAALEVIENaDEFFADLTP 114
                 566799999999996...79*****************9..88887776.......2223444555555...67876...99999987763579999999 PP

                 CBBCSTTHTTSTTTEEEEEESSBSSTSSBSSBEEEEEEEEEEHHHHHHH.TTTT.....STTTEEEEESTTSSSBCTTTTTTSEEEETTTEEEEEEEEE CS
     Trypsin 107 iclpaassslpvgttclvsGwgrtkekgksdtlqevevpvvsretcksa.ykgk.....vtenmlcagakeggkdacqGDSGGPlvcsdgelvGivswg 199
                 +++  +   +p ++ ++v G++         + q+v+  vvsr +ck++ ++++      ++  ++++a     +++ G+SGGP++  ++ ++G+ + g
  KOO22744.1 115 VAWSYEL--PPLQSRVTVRGYPLGG------NAQSVTEGVVSRVDCKNYrLGATssispGRSLVVQIDA-----AINGGNSGGPAFDASNRVIGVAFQG 200
                 9999944..499999********64......45678888888888888764444454444455666666.....***********************99 PP

                 .SSSSCTTS CS
     Trypsin 200 .kgcakgnr 207
                  +g ++ ++
  KOO22744.1 201 iDGAQSIGY 209
                 666666554 PP

>> Peptidase_S46  Peptidase S46
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.0     0.089     4e+02      60      72 ..      59      71 ..      37      79 .. 0.77
   2 !   14.2   0.8     3e-06     0.013     629     654 ..     175     200 ..     166     210 .. 0.89

  Alignments for each domain:
  == domain 1  score: -0.7 bits;  conditional E-value: 0.089
                   EEE-HHHHHHHHH CS
  Peptidase_S46 60 vlTNHHCaygaiq 72
                   +lTNHH++ +a++
     KOO22744.1 59 ILTNHHVIENAVD 71
                   89*****999886 PP

  == domain 2  score: 14.2 bits;  conditional E-value: 3e-06
                    ----TT-TT-EEE-TTS-EEEEEEEE CS
  Peptidase_S46 629 nDitGGNSGSPvlngkgelvGlaFDg 654
                    + i GGNSG P ++++ +++G+aF g
     KOO22744.1 175 AAINGGNSGGPAFDASNRVIGVAFQG 200
                    5689********************87 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (464 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       272  (0.015171); expected 358.6 (0.02)
Passed bias filter:                      242  (0.0134977); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.47u 0.28s 00:00:00.75 Elapsed: 00:00:00.44
# Mc/sec: 3202.24
//
Query:       KOO22745.1  [L=504]
Description: polya polymerase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.9e-24   85.8   0.4    3.2e-11   43.5   0.1    2.7  2  CBS        CBS domain
    5.7e-10   39.3   0.0    1.1e-09   38.5   0.0    1.4  1  DHH        DHH family
  ------ inclusion threshold ------
      0.013   14.7   0.0       0.02   14.2   0.0    1.2  1  Lactonase  Lactonase, 7-bladed beta-propeller


Domain annotation for each model (and alignments):
>> CBS  CBS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.7   0.0   8.4e-14     5e-10       1      54 [.     373     426 ..     373     429 .. 0.90
   2 !   43.5   0.1   5.3e-15   3.2e-11       5      53 ..     440     488 ..     433     489 .. 0.94

  Alignments for each domain:
  == domain 1  score: 39.7 bits;  conditional E-value: 8.4e-14
                 HHHHSBSSCEEEETTSBHHHHHHHHHHHTS..SEEEEEETTTBEEEEEEHHHHHHH CS
         CBS   1 Vgdimtrdvvtvppdttleealelmrekgv..srlPVVdedgklvGivtlrDllra 54 
                 ++d+mt+ v++++p +t+eea+++m  +++   ++PV+d++ kl G++  +D+++a
  KOO22745.1 373 AEDLMTKTVFSCSPGDTMEEAMKMM--NRIakKAVPVIDDERKLMGMLKFSDVVKA 426
                 579**********************..665336******999***********997 PP

  == domain 2  score: 43.5 bits;  conditional E-value: 5.3e-15
                 SBSSCEEEETTSBHHHHHHHHHHHTSSEEEEEETTTBEEEEEEHHHHHH CS
         CBS   5 mtrdvvtvppdttleealelmrekgvsrlPVVdedgklvGivtlrDllr 53 
                 m+rdvvt+ p++   ++ +l++++g +rlPV+de+g l+G+vt++D+lr
  KOO22745.1 440 MRRDVVTIAPEAKFDKVEQLIIDTGSGRLPVTDENGVLLGLVTRTDVLR 488
                 ********************99**************999********98 PP

>> DHH  DHH family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.5   0.0   1.8e-13   1.1e-09       3     101 .]      44     193 ..      43     193 .. 0.87

  Alignments for each domain:
  == domain 1  score: 38.5 bits;  conditional E-value: 1.8e-13
                 EEE-ECSSSHHHHHHHHHHHHC..................................................ECS--TCGGCGCCH.HCCCSEEEEEEE CS
                 xxxxxxxxxxxxxxxxxxxxxx..................................................xxxxxxxxxxxxxx.xxxxxxxxxxxx RF
         DHH   3 livghknpDtDsigSaialanl..................................................lvDhneksqavege.akeeaedviiiD 50 
                 ++++h n D Ds++ a+ala+l                                                  +vD++++++   ++   e+a +v + D
  KOO22745.1  44 VVLTHTNTDFDSLAGAVALAKLwsierpevpthvvmprgvnplvgrflayhkhllpirgfktiravdigaigVVDTQSANRLGPAAaWLENASHVAVYD 142
                 5779*****************777777777777788888888888888888888888888889988999999*******9998776479********** PP

                 -S---SS---SS--EEEE-SSS-HHHHHHHHHHH..TT----HHHHHHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxx RF
         DHH  51 HHrlgeefetlapilflnepvgstaeivaellee..kkeeiskeiaellllgi 101
                 HH       +++p  ++ epvgs  ++++e l++  +k+++s+++a+l +lgi
  KOO22745.1 143 HHSCV--DGDINPTELHLEPVGSVTTVLVEELQKhaHKIKLSETEATLFALGI 193
                 ****7..55666788899***************9999999999*******998 PP

>> Lactonase  Lactonase, 7-bladed beta-propeller
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   0.0   3.3e-06      0.02      24     133 ..     148     257 ..     133     262 .. 0.89

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 3.3e-06
                 TS-EEEEEE.EEESS---SEEE-TTSSEEEEEET.STTTEEEEEEEETTTTEEEEEEEEE.SSS-EEEEEE-TTSSEEEEEETTTTEEEEEEB.TTSEB CS
   Lactonase  24 tgkltplel.vaelenPsyLalspdgktlYavnetgeeggvsafaidkdsgeltllnkvssegaspchlsvdedgkllavAnYsggsvsvfpldadgsl 121
                 +g+++p+el  + +++++ + +++ +k+ + ++ +++e ++ a+ i +d+g+l++ ++++ +g + ++l  +++ + la+A+++++++s ++ d  +s 
  KOO22745.1 148 DGDINPTELhLEPVGSVTTVLVEELQKHAHKIKLSETEATLFALGIRADTGALSFPSTTPRDGRALVYLM-EQGASQLAIAEFGQARLSAVQRDLLASA 245
                 57888888888999999999999**********999************************9999998886.688888******************9999 PP

                 ESECEEEE.... CS
   Lactonase 122 keasqvlkhegs 133
                  + +q  +heg 
  KOO22745.1 246 MRDVQSCEHEGL 257
                 999999999985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (504 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       461  (0.0257125); expected 358.6 (0.02)
Passed bias filter:                      430  (0.0239835); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.52u 0.25s 00:00:00.77 Elapsed: 00:00:00.41
# Mc/sec: 3720.54
//
Query:       KOO22746.1  [L=1422]
Description: androgen induced inhibitor of proliferation pds5 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.17   10.4   3.8       0.75    8.3   3.8    2.0  1  Adaptin_N  Adaptin N terminal region


Domain annotation for each model (and alignments):
>> Adaptin_N  Adaptin N terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.3   3.8   4.2e-05      0.75     121     409 ..      27     398 ..      17     404 .. 0.54

  Alignments for each domain:
  == domain 1  score: 8.3 bits;  conditional E-value: 4.2e-05
                 HHHT-SSHHHHHHHHHHHHHCCCC................CHHCCCCCH..HHHHHHCTT-SS.HHHHHHH.HHHHHHHHCCCCCCC.HHHHHHHCCHH CS
   Adaptin_N 121 kllkdrspyvrkkAalailklykk................dpdllrkql..veeikellsdkd.pgvvlaA.valleeikkndrlll.kllpklvrrLc 198
                 kllk++++ vr   a+++++ ++                   +ll +ql  +eei+++l +++ +++++ A ++++  + + ++l + +ll++l++ L 
  KOO22746.1  27 KLLKHKDTTVRLHLACCLADYLRMiapempyeddpaslrdVLELLIQQLqgLEEIESSLYERHvYLLQRLAyTQAFNLL-QDEELHCdDLLQQLFETLF 124
                 5555555555555555555555555555555554444444222222222238899999988887777777725566666.7777778************ PP

                 HHH.HCS-HHHHHHHHHHHCC---SSHHHH............................................HHHHHHHCGGCG........CSSCH CS
   Adaptin_N 199 nll.teldpwlqvkiiklltrlarqepeer..........................................skkellesllnllq........ssnna 246
                 n+   + +    ++++k+l +l+ ++++++                                            + l ++l+++l          +   
  KOO22746.1 125 NAAhLNHNGAVRAMMVKMLADLCSEYEDASmsaplldsilanllepkrteapaayalakelvadhgtvggvlH-APLQTFLQSCLPnslvtseeGKESE 222
                 99756677788999*************9993333333333333333333333333333333333222222210.2222222222223333443322223 PP

                 HHHHHHHHCCHCCCCST.HHHCCHHCHHHHHHSSCCTCHHHHHCHHHHHHHHX....XTTTT..TTTCCCCSXXTTSXHHHHHHHHHHHCCCXXTTTHH CS
   Adaptin_N 247 Vlletvnlivelapkne.livlavnaLvrllsskdenlryvaLrtllkivkke....pkavq..hldlkifllktdddvsirlkaldlllklvdesNvk 338
                    e  +l++el + ++ + + +  +Lv+  +   e++r  aL+ l++++  e     k+v    ++  +++l+ d ++++r  a+   + l+ ++ + 
  KOO22746.1 223 YRSEWRELVIELTSITTeATSTILPQLVDVAKMDSEATRTDALELLARLLALEecdvAKEVPalLDEAFLRRLI-DVSTEVRVMAVKETVPLLEQKPAL 320
                 33333333334444443455666666666666666667777777777776666555544444434444555566.666666666666666666665543 PP

                 H..HHHHHHHHTTSSXXHHHHHHHHHHHHHHHHHS...CCHHHHHHHHHHHHHTT...XXHHHHHHHHHHHHHHHHHST CS
   Adaptin_N 339 e..ivkeLkkyvkevadedfksklvkaIgrlaekf...atdaewvldvllellsl...sgesvkdeivevirdliqkvp 409
                 +  +++ L+  +++++d+ ++++ v+a+++ a      a+d +++ + l ++      +++ +++++ + ++d+ +k +
  KOO22746.1 321 RatLIEHLLPRARDAKDK-VREAFVTAVCDAALETaleAPDLATYAPLLEDVAHRmldTNKAIGKAARDGLCDVYRKAA 398
                 334555555555666555.666666666666666656655556665555555544444555556666666666666555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1422 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       946  (0.0527637); expected 358.6 (0.02)
Passed bias filter:                      415  (0.0231469); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.92u 0.28s 00:00:01.20 Elapsed: 00:00:00.45
# Mc/sec: 9567.04
//
Query:       KOO22747.1  [L=388]
Description: thioredoxin [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.5e-25   87.5  16.7    9.8e-07   28.0   0.9    4.9  5  EF-hand_5      EF hand
    6.9e-25   87.0   0.1    1.2e-24   86.3   0.1    1.3  1  Thioredoxin    Thioredoxin
    1.4e-24   83.9   7.5    1.3e-05   24.7   0.4    5.3  5  EF-hand_6      EF-hand domain
    1.1e-23   81.0  11.5      3e-05   23.2   0.3    5.2  5  EF-hand_1      EF hand
    4.3e-20   71.9   3.7    5.5e-09   36.4   0.1    3.8  4  EF-hand_7      EF-hand domain pair
    1.9e-17   62.8   5.6    1.1e-06   28.4   0.5    4.3  4  EF-hand_8      EF-hand domain pair
      8e-06   26.1   0.1      0.083   13.2   0.0    3.2  3  SPARC_Ca_bdg   Secreted protein acidic and rich in cysteine C
     0.0014   19.1   0.2      0.012   16.1   0.2    2.4  1  Thioredoxin_2  Thioredoxin-like domain
     0.0023   18.2   0.0     0.0047   17.2   0.0    1.5  1  Thioredoxin_8  Thioredoxin-like
     0.0038   16.6   0.1     0.0054   16.1   0.1    1.2  1  OST3_OST6      OST3 / OST6 family, transporter family
     0.0059   16.8   0.1       0.82    9.9   0.1    3.2  3  Glutaredoxin   Glutaredoxin
     0.0098   15.7   0.0      0.015   15.0   0.0    1.2  1  Thioredoxin_9  Thioredoxin
  ------ inclusion threshold ------
      0.018   15.2   0.1      0.043   14.0   0.1    1.6  1  Thioredoxin_7  Thioredoxin-like
       0.06   13.3   0.0       0.13   12.1   0.0    1.5  1  AhpC-TSA       AhpC/TSA family
       0.19   12.0   0.3       0.19   12.0   0.3    4.1  5  Dockerin_1     Dockerin type I domain


Domain annotation for each model (and alignments):
>> EF-hand_5  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.2       4.7   5.7e+03       4      11 ..      55      62 ..      55      63 .. 0.86
   2 !   28.0   0.9   8.2e-10   9.8e-07       3      23 ..     239     259 ..     237     262 .. 0.89
   3 !   18.0   0.1   1.2e-06    0.0015       2      24 ..     272     295 ..     271     296 .. 0.87
   4 !   26.0   0.1   3.5e-09   4.1e-06       2      22 ..     315     335 ..     314     338 .. 0.91
   5 !   24.7   0.1     9e-09   1.1e-05       4      22 ..     355     373 ..     353     376 .. 0.91

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 4.7
                HHHHH-SS CS
   EF-hand_5  4 tFqaiDlN 11
                +F ++D++
  KOO22747.1 55 VFAKVDVD 62
                5999**98 PP

  == domain 2  score: 28.0 bits;  conditional E-value: 8.2e-10
                 HHHHHH-SS-SSCE-HHHHHH CS
   EF-hand_5   3 dtFqaiDlNgDGkIskeELkt 23 
                 ++F+aiD NgDG+Is++EL++
  KOO22747.1 239 AFFEAIDDNGDGQISFDELEQ 259
                 69*****************87 PP

  == domain 3  score: 18.0 bits;  conditional E-value: 1.2e-06
                 HHHHHHH-SS-SSCE-HHHHHH.H CS
   EF-hand_5   2 kdtFqaiDlNgDGkIskeELkt.l 24 
                 ++ F+ +D  +DG I+keEL++ l
  KOO22747.1 272 DHIFDLLDISRDGLITKEELRQtL 295
                 678*****************8756 PP

  == domain 4  score: 26.0 bits;  conditional E-value: 3.5e-09
                 HHHHHHH-SS-SSCE-HHHHH CS
   EF-hand_5   2 kdtFqaiDlNgDGkIskeELk 22 
                 +d+F+++D+NgDG Is+ EL 
  KOO22747.1 315 DDVFDEVDVNGDGEISRAELA 335
                 58*****************96 PP

  == domain 5  score: 24.7 bits;  conditional E-value: 9e-09
                 HHHHH-SS-SSCE-HHHHH CS
   EF-hand_5   4 tFqaiDlNgDGkIskeELk 22 
                  F+a+D NgDG +s+eEL+
  KOO22747.1 355 IFKALDINGDGSLSREELR 373
                 6*****************8 PP

>> Thioredoxin  Thioredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   86.3   0.1     1e-27   1.2e-24      12      96 ..      16      98 ..       6     105 .. 0.90

  Alignments for each domain:
  == domain 1  score: 86.3 bits;  conditional E-value: 1e-27
                 HHHTTTSSEEEEEEE-TTSHHHHCHHHHHHHHHHHCTTTSEEEEEETTTSHHHHHHTT-SSSSEEEEEETTEEEEEEESS-HHHH CS
  Thioredoxin 12 eevakekklvlveFyApwCghCkalaPeleklaeelkdkvklakvdvdenedlakkyevegiPtlklfkngkevkkyegarekek 96
                 ++v + +klv v+F+A+wCg+Ck++ P++e+++ ++  +v++akvdvd+n+++a++++++++Pt+k+++ g +v++++ga   +k
   KOO22747.1 16 AHVDAGNKLVAVDFTASWCGPCKMIGPQFEAMQPQFP-HVVFAKVDVDDNQEVAAQCGIRAMPTFKFYRCGTQVAEFTGADV-SK 98
                 4577789******************************.*****************************************965.44 PP

>> EF-hand_6  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.5   0.0       1.3   1.6e+03       5      17 ..      55      67 ..      53      70 .. 0.85
   2 !   24.7   0.4   1.1e-08   1.3e-05       3      30 ..     238     264 ..     236     265 .. 0.90
   3 !   20.7   0.0   2.2e-07   0.00026       2      26 ..     271     295 ..     270     308 .. 0.88
   4 !   19.9   0.1   3.7e-07   0.00044       3      27 ..     315     339 ..     313     343 .. 0.91
   5 !   18.2   0.0   1.3e-06    0.0016       3      23 ..     353     373 ..     352     386 .. 0.92

  Alignments for each domain:
  == domain 1  score: -0.5 bits;  conditional E-value: 1.3
   EF-hand_6  5 aFklfDkdgdGki 17
                +F + D+d++ ++
  KOO22747.1 55 VFAKVDVDDNQEV 67
                799*****99875 PP

  == domain 2  score: 24.7 bits;  conditional E-value: 1.1e-08
   EF-hand_6   3 reaFklfDkdgdGkidaeElrkalrkal 30 
                 +++F+++D +gdG+i+++El ++l+  l
  KOO22747.1 238 DAFFEAIDDNGDGQISFDELEQHLS-GL 264
                 689*********************9.66 PP

  == domain 3  score: 20.7 bits;  conditional E-value: 2.2e-07
   EF-hand_6   2 lreaFklfDkdgdGkidaeElrkal 26 
                 ++++F+l+D ++dG i++eElr+ l
  KOO22747.1 271 IDHIFDLLDISRDGLITKEELRQTL 295
                 679*******************987 PP

  == domain 4  score: 19.9 bits;  conditional E-value: 3.7e-07
   EF-hand_6   3 reaFklfDkdgdGkidaeElrkalr 27 
                 +++F++ D++gdG+i+++El + l 
  KOO22747.1 315 DDVFDEVDVNGDGEISRAELAAYLE 339
                 689*****************99986 PP

  == domain 5  score: 18.2 bits;  conditional E-value: 1.3e-06
   EF-hand_6   3 reaFklfDkdgdGkidaeElr 23 
                 r +Fk++D +gdG++++eElr
  KOO22747.1 353 RTIFKALDINGDGSLSREELR 373
                 789*****************8 PP

>> EF-hand_1  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.1       1.6   1.9e+03       5      14 ..      55      64 ..      54      67 .. 0.82
   2 !   23.2   0.3   2.5e-08     3e-05       3      26 ..     238     261 ..     236     264 .. 0.88
   3 !   18.8   0.0   6.6e-07   0.00078       2      26 ..     271     295 ..     270     298 .. 0.91
   4 !   23.1   0.2   2.8e-08   3.3e-05       2      26 ..     314     338 ..     313     340 .. 0.91
   5 !   19.8   0.0   3.2e-07   0.00038       3      26 ..     353     376 ..     352     379 .. 0.89

  Alignments for each domain:
  == domain 1  score: -1.2 bits;  conditional E-value: 1.6
                HHHHHTTTSS CS
   EF-hand_1  5 iFrefDkDgd 14
                +F+++D+D +
  KOO22747.1 55 VFAKVDVDDN 64
                699****976 PP

  == domain 2  score: 23.2 bits;  conditional E-value: 2.5e-08
                 HHHHHHHTTTSSSEEEHHHHHHHH CS
   EF-hand_1   3 keiFrefDkDgdGkIdfeEfkell 26 
                 + +F+ +D +gdG+I+f+E+ + l
  KOO22747.1 238 DAFFEAIDDNGDGQISFDELEQHL 261
                 789*****************9876 PP

  == domain 3  score: 18.8 bits;  conditional E-value: 6.6e-07
                 HHHHHHHHTTTSSSEEEHHHHHHHH CS
   EF-hand_1   2 lkeiFrefDkDgdGkIdfeEfkell 26 
                 ++ iF+++D  +dG I++eE+++ l
  KOO22747.1 271 IDHIFDLLDISRDGLITKEELRQTL 295
                 789*******************976 PP

  == domain 4  score: 23.1 bits;  conditional E-value: 2.8e-08
                 HHHHHHHHTTTSSSEEEHHHHHHHH CS
   EF-hand_1   2 lkeiFrefDkDgdGkIdfeEfkell 26 
                  +++F+e+D++gdG I++ E+ ++l
  KOO22747.1 314 ADDVFDEVDVNGDGEISRAELAAYL 338
                 689******************9887 PP

  == domain 5  score: 19.8 bits;  conditional E-value: 3.2e-07
                 HHHHHHHTTTSSSEEEHHHHHHHH CS
   EF-hand_1   3 keiFrefDkDgdGkIdfeEfkell 26 
                 + iF+ +D +gdG +++eE++  +
  KOO22747.1 353 RTIFKALDINGDGSLSREELRVGF 376
                 679*****************9765 PP

>> EF-hand_7  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.0         8   9.6e+03      49      59 ..      55      65 ..      53      67 .. 0.57
   2 !   17.2   0.1   4.5e-06    0.0054      47      69 ..     238     260 ..     231     262 .. 0.90
   3 !   36.4   0.1   4.6e-12   5.5e-09       4      69 ..     271     337 ..     270     339 .. 0.78
   4 !   33.3   0.1     4e-11   4.8e-08       7      67 ..     317     373 ..     316     382 .. 0.80

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 8
   EF-hand_7 49 lfkefDtdkdG 59
                +f ++D d++ 
  KOO22747.1 55 VFAKVDVDDNQ 65
                45666666654 PP

  == domain 2  score: 17.2 bits;  conditional E-value: 4.5e-06
   EF-hand_7  47 ellfkefDtdkdGvisfdEFlkl 69 
                 +++f+ +D ++dG+isfdE+++ 
  KOO22747.1 238 DAFFEAIDDNGDGQISFDELEQH 260
                 789****************9985 PP

  == domain 3  score: 36.4 bits;  conditional E-value: 4.6e-12
   EF-hand_7   4 lkeaFkelDtdgdgyldkeellrllrkifqga.....gegsklsdeelellfkefDtdkdGvisfdEFlkl 69 
                 +  +F++lD  +dg ++keel++ l    + a     g g +      +++f+e+D ++dG+is+ E+ ++
  KOO22747.1 271 IDHIFDLLDISRDGLITKEELRQTLVTYEDPAlrmalGLGAP----DADDVFDEVDVNGDGEISRAELAAY 337
                 5678*******************5554443334443355555....367******************9887 PP

  == domain 4  score: 33.3 bits;  conditional E-value: 4e-11
   EF-hand_7   7 aFkelDtdgdgyldkeellrllrkifqgagegsklsdee...lellfkefDtdkdGvisfdEFl 67 
                 +F+e D++gdg ++++el  +l+ ++      s++  +     +++fk +D ++dG++s++E++
  KOO22747.1 317 VFDEVDVNGDGEISRAELAAYLE-LN------SSSAADVpacARTIFKALDINGDGSLSREELR 373
                 7******************5555.33......33222223459*******************86 PP

>> EF-hand_8  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.9   0.5   0.00026      0.31      30      47 ..     239     256 ..     237     259 .. 0.88
   2 !   28.4   0.5   8.9e-10   1.1e-06       2      50 ..     249     293 ..     248     298 .. 0.91
   3 !   27.5   0.0   1.8e-09   2.1e-06       2      54 ..     283     340 ..     282     341 .. 0.91
   4 !   15.6   0.0   8.8e-06     0.011      29      53 ..     353     377 ..     350     379 .. 0.89

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00026
   EF-hand_8  30 ilfrefDtdgdGkisfeE 47 
                 + f ++D +gdG isf+E
  KOO22747.1 239 AFFEAIDDNGDGQISFDE 256
                 55899************9 PP

  == domain 2  score: 28.4 bits;  conditional E-value: 8.9e-10
   EF-hand_8   2 kgkItreelrrilrilglkk.glseeevdilfrefDtdgdGkisfeEFcv 50 
                 +g+I+++el       +l + g+ + ++d++f+++D+ +dG i++eE  +
  KOO22747.1 249 DGQISFDELEQ-----HLSGlGFKAGAIDHIFDLLDISRDGLITKEELRQ 293
                 8**********.....888888*************************865 PP

  == domain 3  score: 27.5 bits;  conditional E-value: 1.8e-09
   EF-hand_8   2 kgkItreelrrilrilglkk.......glseeevdilfrefDtdgdGkisfeEFcvller 54 
                 +g It+eelr +l  + +++       gl++ ++d++f+e+D +gdG is  E  ++le 
  KOO22747.1 283 DGLITKEELRQTL--VTYEDpalrmalGLGAPDADDVFDEVDVNGDGEISRAELAAYLEL 340
                 89*********77..4566788999*******************************9985 PP

  == domain 4  score: 15.6 bits;  conditional E-value: 8.8e-06
   EF-hand_8  29 dilfrefDtdgdGkisfeEFcvlle 53 
                 +++f+++D++gdG +s eE  v + 
  KOO22747.1 353 RTIFKALDINGDGSLSREELRVGFD 377
                 89*****************988765 PP

>> SPARC_Ca_bdg  Secreted protein acidic and rich in cysteine Ca binding region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.6   0.1     0.066        79      91     109 ..     238     256 ..     237     259 .. 0.84
   2 ?    3.7   0.0     0.061        73      55      78 ..     270     293 ..     258     300 .. 0.85
   3 !   13.2   0.0     7e-05     0.083      60     109 ..     318     371 ..     314     374 .. 0.82

  Alignments for each domain:
  == domain 1  score: 3.6 bits;  conditional E-value: 0.066
  SPARC_Ca_bdg  91 kpflescDadkdkkislkE 109
                   ++f+e+ D + d++is  E
    KOO22747.1 238 DAFFEAIDDNGDGQISFDE 256
                   5799999999999999988 PP

  == domain 2  score: 3.7 bits;  conditional E-value: 0.061
  SPARC_Ca_bdg  55 pvawkFsklDtnsdkvlsksELap 78 
                   ++   F+ lD  +d++++k+EL++
    KOO22747.1 270 AIDHIFDLLDISRDGLITKEELRQ 293
                   56778999*************976 PP

  == domain 3  score: 13.2 bits;  conditional E-value: 7e-05
  SPARC_Ca_bdg  60 FsklDtnsdkvlsksELap...lra.plvklehCikpflescDadkdkkislkE 109
                   F+++D+n d+ +s++ELa+   l++ +   +  C ++ +++ D + d+++s++E
    KOO22747.1 318 FDEVDVNGDGEISRAELAAyleLNSsSAADVPACARTIFKALDINGDGSLSREE 371
                   99***************8621133214566789******************999 PP

>> Thioredoxin_2  Thioredoxin-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.2   9.9e-06     0.012       5      98 ..      22      93 ..      18      98 .. 0.73

  Alignments for each domain:
  == domain 1  score: 16.1 bits;  conditional E-value: 9.9e-06
  Thioredoxin_2  5 gkpvlvvftdpdCpyCkklkkelkelddvtvrvllfplkpsfepkavaiwcakekkkafkdieenvelarkygvrgtPtivfldgkeivarlpG 98
                   +k v+v+ft+++C+ Ck +  +++ +                +p++ ++  ak  +      ++n+e+a + g+r++Pt+ f+   + va+ +G
     KOO22747.1 22 NKLVAVDFTASWCGPCKMIGPQFEAM----------------QPQFPHVVFAKVDV------DDNQEVAAQCGIRAMPTFKFYRCGTQVAEFTG 93
                   7899*****************99999................23333344444332......4455678999*******998766656666666 PP

>> Thioredoxin_8  Thioredoxin-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   0.0   3.9e-06    0.0047       1      48 [.      22      66 ..      21      88 .. 0.83

  Alignments for each domain:
  == domain 1  score: 17.2 bits;  conditional E-value: 3.9e-06
                   .SEEEEEE--SSSHHHHHHHHHHHHHHHHHHHTTSEEEEEEE-SS-HH CS
  Thioredoxin_8  1 gkvvlLyfgaswcppckaftpklkelyeklkkkkkveivyvsldkkee 48
                   +k+v++ f aswc pck + p+  +++ ++     v++  v +d ++e
     KOO22747.1 22 NKLVAVDFTASWCGPCKMIGPQFEAMQPQFP---HVVFAKVDVDDNQE 66
                   69****************************6...88888888886654 PP

>> OST3_OST6  OST3 / OST6 family, transporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.1   4.5e-06    0.0054      46     107 ..      34      87 ..      23     117 .. 0.79

  Alignments for each domain:
  == domain 1  score: 16.1 bits;  conditional E-value: 4.5e-06
   OST3_OST6  46 CelCrefepefelvakswrkdekskskklfFakvdfdegkdvFqklglnsaPhlllfppkkg 107
                 C +C+ + p+fe++  ++          ++Fakvd+d++++v ++ g++  P + ++   ++
  KOO22747.1  34 CGPCKMIGPQFEAMQPQFP--------HVVFAKVDVDDNQEVAAQCGIRAMPTFKFYRCGTQ 87 
                 8888888888887766664........469************************99987554 PP

>> Glutaredoxin  Glutaredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.9   0.1   0.00069      0.82       4      41 ..      29      71 ..      27      79 .. 0.84
   2 ?   -2.1   0.0       3.9   4.7e+03      26      43 ..     275     293 ..     262     298 .. 0.75
   3 ?    2.7   0.0      0.12   1.5e+02      26      45 ..     318     338 ..     304     350 .. 0.80

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.00069
                  EESTSSHHHHHHHHHHHHTT.....GGEEEEEGCCSHHHHHHH CS
  Glutaredoxin  4 ftkptCpyCkkakrlLkelg.....vkfeeidvdkdeeireel 41
                  ft ++C+ Ck++   ++ +      v f+ +dvd+++e+ ++ 
    KOO22747.1 29 FTASWCGPCKMIGPQFEAMQpqfphVVFAKVDVDDNQEVAAQC 71
                  8999****************8877777*********9988766 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 3.9
                   EEEEEGCCSH.HHHHHHHH CS
  Glutaredoxin  26 feeidvdkde.eireelke 43 
                   f+  d++ d    +eel++
    KOO22747.1 275 FDLLDISRDGlITKEELRQ 293
                   7888999987766666665 PP

  == domain 3  score: 2.7 bits;  conditional E-value: 0.12
                   EEEEEGCCSH.HHHHHHHHHH CS
  Glutaredoxin  26 feeidvdkde.eireelkels 45 
                   f+e+dv+ d    r+el +++
    KOO22747.1 318 FDEVDVNGDGeISRAELAAYL 338
                   9********648889988876 PP

>> Thioredoxin_9  Thioredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.0   1.3e-05     0.015      46     109 ..      27      87 ..       8     100 .. 0.86

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 1.3e-05
                    EEE--TT-HHHHHHHHHHHHHHHH-TTEEEEEE-HHHHHHHTTTTTT-SS--SSEEEEE-TT-- CS
  Thioredoxin_9  46 lvltedwCgDaavnvPvlakiaelnpnievkillrdenlelmdqyltngaraiPtliildeege 109
                    + +t+ wCg + ++ P +++++ + p + +  +  d+n+e+  q    g ra Pt+ ++  +++
     KOO22747.1  27 VDFTASWCGPCKMIGPQFEAMQPQFPHVVFAKVDVDDNQEVAAQC---GIRAMPTFKFYRCGTQ 87 
                    4489***************************************98...8899999988765554 PP

>> Thioredoxin_7  Thioredoxin-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.1   3.6e-05     0.043      17      65 ..      22      66 ..       7      83 .. 0.73

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 3.6e-05
                   T--EEEEE--TT-HHHHHHHHHHHH-HHHHH.HHHT-EEEEESS--S-G CS
  Thioredoxin_7 17 gkpvlvffgaswcftCqalerdflsdeevkaalaekfvllrvdvterda 65
                   +k v v+f+aswc++C+ +  +f+     ++    ++v+ +vdv+ +++
     KOO22747.1 22 NKLVAVDFTASWCGPCKMIGPQFEAM---QP-QFPHVVFAKVDVDDNQE 66
                   566779*************9999887...44.33788888888877665 PP

>> AhpC-TSA  AhpC/TSA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   0.00011      0.13      24      75 ..      21      69 ..       9      78 .. 0.81

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 0.00011
                TTSEEEEEEESTST-CCHHHHHHHHHHCHHHCCCTTEEEEEEESSSCHHHHH CS
    AhpC-TSA 24 kgkpvvlffypkdwcpvCttelpalaklyeefkergvevigvsvdspeshkk 75
                 +k v + f+++ wc +C+   p+++++ ++f    v    v vd+ +++++
  KOO22747.1 21 GNKLVAVDFTAS-WCGPCKMIGPQFEAMQPQFP--HVVFAKVDVDDNQEVAA 69
                448999999999.*******************8..56666777766666555 PP

>> Dockerin_1  Dockerin type I domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.6       7.4   8.8e+03       3      12 ..      60      69 ..      58      69 .. 0.80
   2 ?    1.2   0.1      0.37   4.4e+02      36      46 ..     243     253 ..     236     259 .. 0.75
   3 ?   -0.8   0.0       1.5   1.8e+03      37      47 ..     278     288 ..     271     293 .. 0.82
   4 ?    8.9   0.2    0.0015       1.7      36      50 ..     320     334 ..     309     339 .. 0.79
   5 ?   12.0   0.3   0.00016      0.19       3      46 ..     322     368 ..     320     372 .. 0.80

  Alignments for each domain:
  == domain 1  score: -3.0 bits;  conditional E-value: 7.4
                ETTSSSC-SH CS
  Dockerin_1  3 DVNgDgkVna 12
                DV+++++V a
  KOO22747.1 60 DVDDNQEVAA 69
                9999999965 PP

  == domain 2  score: 1.2 bits;  conditional E-value: 0.37
                 GGSTT-SSCES CS
  Dockerin_1  36 aaDvNgDGrvn 46 
                 a D NgDG+++
  KOO22747.1 243 AIDDNGDGQIS 253
                 66777777775 PP

  == domain 3  score: -0.8 bits;  conditional E-value: 1.5
                 GSTT-SSCESH CS
  Dockerin_1  37 aDvNgDGrvna 47 
                 +D+++DG +++
  KOO22747.1 278 LDISRDGLITK 288
                 79999999886 PP

  == domain 4  score: 8.9 bits;  conditional E-value: 0.0015
                 GGSTT-SSCESHHHH CS
  Dockerin_1  36 aaDvNgDGrvnalDa 50 
                   DvNgDG+++   +
  KOO22747.1 320 EVDVNGDGEISRAEL 334
                 679999999997665 PP

  == domain 5  score: 12.0 bits;  conditional E-value: 0.00016
                 ETTSSSC-SHHHHHHHHHHCT......SSEBTTSCCCHGGGSTT-SSCES CS
  Dockerin_1   3 DVNgDgkVnalDalliinyln......qregqssssngkaaDvNgDGrvn 46 
                 DVNgDg+++   +++   yl+      ++++  + +  ka+D+NgDG+ +
  KOO22747.1 322 DVNGDGEISRAELAA---YLElnsssaADVPACARTIFKALDINGDGSLS 368
                 999999999976665...44444799888899999999999999999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (388 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       325  (0.0181271); expected 358.6 (0.02)
Passed bias filter:                      306  (0.0170673); expected 358.6 (0.02)
Passed Vit filter:                        50  (0.00278878); expected 17.9 (0.001)
Passed Fwd filter:                        15  (0.000836633); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              15  [number of targets reported over threshold]
# CPU time: 0.50u 0.23s 00:00:00.73 Elapsed: 00:00:00.41
# Mc/sec: 2869.99
//
Query:       KOO22748.1  [L=1633]
Description: hypothetical protein Ctob_000629 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.9e-09   35.8   0.9     0.0014   18.0   0.1    2.9  2  EF-hand_1       EF hand
    3.3e-09   37.1   0.1    8.2e-09   35.8   0.1    1.8  1  EF-hand_7       EF-hand domain pair
    1.8e-06   27.4   0.1      0.016   15.1   0.1    3.2  2  EF-hand_6       EF-hand domain
    1.5e-05   24.2   0.8       0.31   10.6   0.5    3.0  2  EF-hand_5       EF hand
    3.1e-05   24.1   0.0        5.2    7.3   0.0    5.1  5  Pentapeptide_4  Pentapeptide repeats (9 copies)
    6.6e-05   22.7   2.2      0.004   17.0   0.1    3.6  3  EF-hand_8       EF-hand domain pair
     0.0043   16.8   0.0      0.016   15.0   0.0    2.1  1  SinI            Anti-repressor SinI
  ------ inclusion threshold ------
      0.018   15.6   5.0         49    4.6   0.4    5.4  4  MerR-DNA-bind   MerR, DNA binding
      0.072   13.4   0.0       0.21   11.9   0.0    1.8  1  SH3_3           Bacterial SH3 domain


Domain annotation for each model (and alignments):
>> EF-hand_1  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.1     4e-06    0.0079       2      27 ..      91     116 ..      90     118 .. 0.91
   2 !   18.0   0.1   7.2e-07    0.0014       2      28 ..     127     153 ..     126     154 .. 0.94

  Alignments for each domain:
  == domain 1  score: 15.7 bits;  conditional E-value: 4e-06
                 HHHHHHHHTTTSSSEEEHHHHHHHHH CS
   EF-hand_1   2 lkeiFrefDkDgdGkIdfeEfkellk 27 
                 l+++F+++D Dg+G Id  E+ e+++
  KOO22748.1  91 LERLFNDIDEDGSGEIDGTEMAEAIA 116
                 7899*****************99876 PP

  == domain 2  score: 18.0 bits;  conditional E-value: 7.2e-07
                 HHHHHHHHTTTSSSEEEHHHHHHHHHH CS
   EF-hand_1   2 lkeiFrefDkDgdGkIdfeEfkellkk 28 
                 +ke+++ +D+D dG+++  E+k ++++
  KOO22748.1 127 VKEMMKAADTDADGTVNMAEYKIIMRA 153
                 79**********************985 PP

>> EF-hand_7  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.8   0.1   4.1e-12   8.2e-09       2      71 .]      89     152 ..      78     152 .. 0.94

  Alignments for each domain:
  == domain 1  score: 35.8 bits;  conditional E-value: 4.1e-12
   EF-hand_7   2 eklkeaFkelDtdgdgyldkeellrllrkifqgagegsklsdeelellfkefDtdkdGvisfdEFlklyr 71 
                 e l++ F+ +D dg+g +d +e+ +++           kl +e +++++k  Dtd dG++++ E++ ++r
  KOO22748.1  89 ETLERLFNDIDEDGSGEIDGTEMAEAIA------QVFGKLEPEIVKEMMKAADTDADGTVNMAEYKIIMR 152
                 779999******************9999......7778889999**********************9996 PP

>> EF-hand_6  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.1   7.8e-06     0.016       2      27 ..      91     116 ..      90     122 .. 0.89
   2 !    8.5   0.0     0.001         2       4      29 ..     129     153 ..     127     158 .. 0.86

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 7.8e-06
   EF-hand_6   2 lreaFklfDkdgdGkidaeElrkalr 27 
                 l+++F+ +D dg+G+id  E+  a+ 
  KOO22748.1  91 LERLFNDIDEDGSGEIDGTEMAEAIA 116
                 789*****************999876 PP

  == domain 2  score: 8.5 bits;  conditional E-value: 0.001
   EF-hand_6   4 eaFklfDkdgdGkidaeElrkalrka 29 
                 e  k+ D+d dG+++++E + ++r a
  KOO22748.1 129 EMMKAADTDADGTVNMAEYKIIMR-A 153
                 566889*****************9.5 PP

>> EF-hand_5  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.6   0.5   0.00015      0.31       2      21 ..      92     111 ..      91     115 .. 0.86
   2 !   10.6   0.0   0.00016      0.32       2      22 ..     128     148 ..     126     151 .. 0.86

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00015
                 HHHHHHH-SS-SSCE-HHHH CS
   EF-hand_5   2 kdtFqaiDlNgDGkIskeEL 21 
                 + +F+ iD +g+G I+  E 
  KOO22748.1  92 ERLFNDIDEDGSGEIDGTEM 111
                 678*************9886 PP

  == domain 2  score: 10.6 bits;  conditional E-value: 0.00016
                 HHHHHHH-SS-SSCE-HHHHH CS
   EF-hand_5   2 kdtFqaiDlNgDGkIskeELk 22 
                 k++ +a+D++ DG++++ E k
  KOO22748.1 128 KEMMKAADTDADGTVNMAEYK 148
                 45899**************87 PP

>> Pentapeptide_4  Pentapeptide repeats (9 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.3   0.0    0.0026       5.2      13      56 ..     679     722 ..     669     740 .. 0.63
   2 ?   -0.2   0.0      0.58   1.2e+03      53      72 ..     790     810 ..     784     834 .. 0.69
   3 ?   -0.6   0.0      0.75   1.5e+03      13      58 ..     881     926 ..     871     935 .. 0.50
   4 !    5.8   0.0    0.0075        15      15      68 ..    1065    1118 ..    1051    1150 .. 0.62
   5 ?    2.3   0.0     0.098   1.9e+02      12      55 ..    1243    1286 ..    1229    1299 .. 0.51

  Alignments for each domain:
  == domain 1  score: 7.3 bits;  conditional E-value: 0.0026
  Pentapeptide_4  13 lsnvnFsearlrdcnFtecrlsnvnFdecnlsdvdfaevdlkra 56 
                     l nv+F + +l d  Ft+  l++  F+   l  v f++ +lk++
      KOO22748.1 679 LRNVSFGARELLDIGFTAKELKEGFFEAKELTAVGFTPLELKNL 722
                     44555555666666666666666666666666666666666555 PP

  == domain 2  score: -0.2 bits;  conditional E-value: 0.58
  Pentapeptide_4  53 lkrasFsgcnlknvnf.sdkl 72 
                     l+ a+F++++l+++ + s ++
      KOO22748.1 790 LRAAQFTAMDLRKALIfSVQM 810
                     566677777776655434343 PP

  == domain 3  score: -0.6 bits;  conditional E-value: 0.75
  Pentapeptide_4  13 lsnvnFsearlrdcnFtecrlsnvnFdecnlsdvdfaevdlkrasF 58 
                     l++++F + +l ++  t+  ++++  +  +l+ +   +++lk++ +
      KOO22748.1 881 LKGADFQAWELMEAGYTAQEIKEAGTSLVQLKAAGTPMISLKDIGY 926
                     3444444444444444444444444444444444444455554444 PP

  == domain 4  score: 5.8 bits;  conditional E-value: 0.0075
  Pentapeptide_4   15 nvnFsearlrdcnFtecrlsnvnFdecnlsdvdfaevdlkrasFsgcnlknvnf 68  
                      ++ +++ +l  + Ft++ l ++      l+++ f  ++l+++ Fs  +lk    
      KOO22748.1 1065 EAGYTAKELLVAGFTAAELIACGYGVGALREAGFDAIQLRKLGFSLAELKAYGY 1118
                      555555556666666666644444444455555555555555555554444333 PP

  == domain 5  score: 2.3 bits;  conditional E-value: 0.098
  Pentapeptide_4   12 klsnvnFsearlrdcnFtecrlsnvnFdecnlsdvdfaevdlkr 55  
                       l++ ++++++l++++  +  l +v F+   l+ + f+  +l+ 
      KOO22748.1 1243 ELAEGDYTATELKAARYYAEELRAVGFTAGALRVAGFTSKQLRA 1286
                      44444444444444444444444444444444444444444444 PP

>> EF-hand_8  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.3   0.4    0.0042       8.5      21      47 ..      81     110 ..      67     114 .. 0.81
   2 !   17.0   0.1     2e-06     0.004       2      49 ..     103     148 ..     102     152 .. 0.90
   3 ?    1.0   0.0       0.2   3.9e+02      22      36 ..     417     431 ..     403     433 .. 0.81

  Alignments for each domain:
  == domain 1  score: 6.3 bits;  conditional E-value: 0.0042
   EF-hand_8  21 k...glseeevdilfrefDtdgdGkisfeE 47 
                 +   g s+e ++ lf+ +D+dg+G i+ +E
  KOO22748.1  81 DspdGPSDETLERLFNDIDEDGSGEIDGTE 110
                 2555789999**************998666 PP

  == domain 2  score: 17.0 bits;  conditional E-value: 2e-06
   EF-hand_8   2 kgkItreelrril.rilglkkglseeevdilfrefDtdgdGkisfeEFc 49 
                 +g+I+ +e+ +++  ++g  k l +e v ++++++Dtd dG+++  E+ 
  KOO22748.1 103 SGEIDGTEMAEAIaQVFG--K-LEPEIVKEMMKAADTDADGTVNMAEYK 148
                 799**********88888..4.**********************99985 PP

  == domain 3  score: 1.0 bits;  conditional E-value: 0.2
   EF-hand_8  22 glseeevdilfrefD 36 
                 + +++evd l+++fD
  KOO22748.1 417 DGTASEVDNLLYTFD 431
                 4899**********9 PP

>> SinI  Anti-repressor SinI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.0     8e-06     0.016       5      19 ..     454     468 ..     452     469 .. 0.94

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 8e-06
                 HHHHHHHHHHHT--S CS
        SinI   5 WveLikEAkesGlsk 19 
                 W++L++EA+e+G+s+
  KOO22748.1 454 WYDLVQEAREAGISV 468
                 *************95 PP

>> MerR-DNA-bind  MerR, DNA binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.6   0.4     0.025        49      17      63 ..     188     232 ..     184     233 .. 0.84
   2 ?    3.6   0.0     0.049        97       9      22 ..    1102    1115 ..    1101    1117 .. 0.87
   3 ?    3.9   0.0     0.039        78       6      19 ..    1129    1142 ..    1128    1145 .. 0.91
   4 ?   -1.0   0.0       1.4   2.7e+03       9      22 ..    1192    1205 ..    1190    1205 .. 0.84

  Alignments for each domain:
  == domain 1  score: 4.6 bits;  conditional E-value: 0.025
                    HHHHHHHHHHHHSTTTBHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
  MerR-DNA-bind  17 LdeIrelLalyddrappcqdvrallarklaeleeriaeLqalraeLa 63 
                    L+e+   L+l+  ++ + ++vr+ l+ + + le + a+L++l   L+
     KOO22748.1 188 LEEVNIYLTLR--GEGADPEVRKPLKDRQKALEGQVAKLAELLSALQ 232
                    67777778774..456778899999*****************99997 PP

  == domain 2  score: 3.6 bits;  conditional E-value: 0.049
                     HHHHTT--HHHHHH CS
  MerR-DNA-bind    9 rarrlGFsLdeIre 22  
                     ++r lGFsL+e ++
     KOO22748.1 1102 QLRKLGFSLAELKA 1115
                     589********886 PP

  == domain 3  score: 3.9 bits;  conditional E-value: 0.039
                     HHHHHHHTT--HHH CS
  MerR-DNA-bind    6 fIrrarrlGFsLde 19  
                     +I+ + +lGFsL+e
     KOO22748.1 1129 VIKELHELGFSLEE 1142
                     799**********9 PP

  == domain 4  score: -1.0 bits;  conditional E-value: 1.4
                     HHHHTT--HHHHHH CS
  MerR-DNA-bind    9 rarrlGFsLdeIre 22  
                      +++ GFsL++ re
     KOO22748.1 1192 DLKDQGFSLKDLRE 1205
                     67899******997 PP

>> SH3_3  Bacterial SH3 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   0.00011      0.21       3      41 ..    1347    1403 ..    1345    1408 .. 0.85

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 0.00011
       SH3_3    3 lnvRsgPstssevigtlpyGekVevleetggge..................Wykvrt 41  
                  l++R+g s++s v g+l +G+++ vl + + ++                  W+ v  
  KOO22748.1 1347 LKMREGSSLESAVAGKLAAGSRLVVLQRADLEDgtqrvcvakeeepskplgWVSVTG 1403
                  789***********************9999988888888888888888888888844 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1633 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       770  (0.0429472); expected 358.6 (0.02)
Passed bias filter:                      555  (0.0309554); expected 358.6 (0.02)
Passed Vit filter:                        51  (0.00284455); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.92u 0.32s 00:00:01.24 Elapsed: 00:00:00.46
# Mc/sec: 10626.22
//
Query:       KOO22749.1  [L=327]
Description: hypothetical protein Ctob_000626 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.5e-20   71.3   0.8    6.8e-05   22.5   0.0    4.5  4  EF-hand_6      EF-hand domain
    1.9e-17   61.4   5.5    9.4e-06   24.8   0.1    4.5  4  EF-hand_1      EF hand
    1.4e-12   47.8   3.4      3e-05   24.4   0.3    2.8  2  EF-hand_7      EF-hand domain pair
    1.3e-09   37.1  16.2    2.6e-05   23.5   1.6    4.8  4  EF-hand_5      EF hand
    1.2e-07   31.5   7.4      0.062   13.2   0.1    5.2  5  EF-hand_8      EF-hand domain pair
     0.0031   17.4   0.8     0.0031   17.4   0.8    2.6  3  Transcrip_act  Transcriptional activator
  ------ inclusion threshold ------
      0.043   14.0   0.2         10    6.4   0.0    3.1  3  Dockerin_1     Dockerin type I domain
      0.047   13.8   0.2       0.23   11.6   0.2    2.3  1  Med9           RNA polymerase II transcription mediator compl
      0.088   12.2   5.3       0.37   10.2   0.3    2.7  3  DUF4618        Domain of unknown function (DUF4618)
       0.12   12.8   0.7       0.28   11.6   0.6    1.7  1  DUF3740        Sulfatase protein
       0.28   11.5   2.0        3.6    7.9   0.0    3.1  3  BLOC1_2        Biogenesis of lysosome-related organelles comp
       0.85   10.2   4.8         25    5.5   0.2    3.2  3  Syntaxin-6_N   Syntaxin 6, N-terminal
        2.2    8.3   8.8        1.9    8.6   0.4    3.3  3  TPR_MLP1_2     TPR/MLP1/MLP2-like protein


Domain annotation for each model (and alignments):
>> EF-hand_6  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.0   0.0   5.5e-05     0.075       4      28 ..      70      94 ..      68     100 .. 0.91
   2 !   22.5   0.0   4.9e-08   6.8e-05       2      26 ..     106     130 ..     105     134 .. 0.90
   3 !   14.4   0.0     2e-05     0.027       9      31 .]     215     236 ..     214     236 .. 0.90
   4 !   16.4   0.0   4.6e-06    0.0063       1      27 [.     246     272 ..     246     279 .. 0.92

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 5.5e-05
   EF-hand_6  4 eaFklfDkdgdGkidaeElrkalrk 28
                eaF ++D+++d ki++ E+r ++rk
  KOO22749.1 70 EAFLAWDTNKDEKISKMEWRVHIRK 94
                89*****************999983 PP

  == domain 2  score: 22.5 bits;  conditional E-value: 4.9e-08
   EF-hand_6   2 lreaFklfDkdgdGkidaeElrkal 26 
                 ++e+F++fD +++G+i+aeEl  al
  KOO22749.1 106 IDELFDKFDLNKSGFINAEELEPAL 130
                 789******************8777 PP

  == domain 3  score: 14.4 bits;  conditional E-value: 2e-05
   EF-hand_6   9 fDkdgdGkidaeElrkalrkalg 31 
                 +D+dg+Gk+d+ E+r + r alg
  KOO22749.1 215 WDTDGNGKVDKLEFRFHVR-ALG 236
                 6**************9998.776 PP

  == domain 4  score: 16.4 bits;  conditional E-value: 4.6e-06
   EF-hand_6   1 elreaFklfDkdgdGkidaeElrkalr 27 
                 el+++F  +D dg+ ++ ++El++al 
  KOO22749.1 246 ELDDLFTSLDSDGSKELEMKELQSALL 272
                 6899********************996 PP

>> EF-hand_1  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.4   0.0     3e-05     0.041       3      28 ..      69      94 ..      68      95 .. 0.91
   2 !   24.8   0.1   6.8e-09   9.4e-06       1      24 [.     105     128 ..     105     132 .. 0.89
   3 !   12.6   0.0   5.4e-05     0.074      10      27 ..     216     233 ..     215     235 .. 0.86
   4 !   10.3   0.1   0.00029       0.4       1      26 [.     246     271 ..     246     273 .. 0.94

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 3e-05
                HHHHHHHTTTSSSEEEHHHHHHHHHH CS
   EF-hand_1  3 keiFrefDkDgdGkIdfeEfkellkk 28
                +e+F   D+++d kI++ E++  ++k
  KOO22749.1 69 DEAFLAWDTNKDEKISKMEWRVHIRK 94
                799*****************988776 PP

  == domain 2  score: 24.8 bits;  conditional E-value: 6.8e-09
                 HHHHHHHHHTTTSSSEEEHHHHHH CS
   EF-hand_1   1 elkeiFrefDkDgdGkIdfeEfke 24 
                 +++e+F++fD +++G+I+ eE+  
  KOO22749.1 105 KIDELFDKFDLNKSGFINAEELEP 128
                 589******************975 PP

  == domain 3  score: 12.6 bits;  conditional E-value: 5.4e-05
                 TTTSSSEEEHHHHHHHHH CS
   EF-hand_1  10 DkDgdGkIdfeEfkellk 27 
                 D+Dg+Gk+d+ Ef+  ++
  KOO22749.1 216 DTDGNGKVDKLEFRFHVR 233
                 9************97666 PP

  == domain 4  score: 10.3 bits;  conditional E-value: 0.00029
                 HHHHHHHHHTTTSSSEEEHHHHHHHH CS
   EF-hand_1   1 elkeiFrefDkDgdGkIdfeEfkell 26 
                 el+++F  +D Dg+  ++ +E++++l
  KOO22749.1 246 ELDDLFTSLDSDGSKELEMKELQSAL 271
                 79********************9987 PP

>> EF-hand_7  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.4   0.3   2.1e-08     3e-05       6      67 ..      70     127 ..      67     131 .. 0.82
   2 !   23.4   0.2   4.3e-08     6e-05      12      69 ..     216     270 ..     215     272 .. 0.85

  Alignments for each domain:
  == domain 1  score: 24.4 bits;  conditional E-value: 2.1e-08
   EF-hand_7   6 eaFkelDtdgdgyldkeellrllrkifqga..gegsklsdeelellfkefDtdkdGvisfdEFl 67 
                 eaF + Dt++d +++k e + ++ +       + ++++++  +++lf++fD++k+G i+ +E++
  KOO22749.1  70 EAFLAWDTNKDEKISKMEWR-VHIRK---LpgCQNDSIHK--IDELFDKFDLNKSGFINAEELE 127
                 578889**************.65542...23366666665..********************86 PP

  == domain 2  score: 23.4 bits;  conditional E-value: 4.3e-08
   EF-hand_7  12 DtdgdgyldkeellrllrkifqgagegsklsdeelellfkefDtdkdGvisfdEFlkl 69 
                 Dtdg+g++dk e++ ++ +   + g +   sd el++lf  +D+d++ ++ + E++ +
  KOO22749.1 216 DTDGNGKVDKLEFR-FHVRALGS-GLQAA-SDAELDDLFTSLDSDGSKELEMKELQSA 270
                 9*************.77764433.66666.899*********************9876 PP

>> EF-hand_5  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.1   0.0    0.0014         2       4      22 ..      71      89 ..      68      92 .. 0.87
   2 !   23.5   1.6   1.9e-08   2.6e-05       1      22 [.     106     127 ..     106     127 .. 0.92
   3 !   11.4   0.1   0.00012      0.17       9      22 ..     216     229 ..     216     232 .. 0.95
   4 ?    2.1   0.1      0.11   1.5e+02       1      22 [.     247     268 ..     247     272 .. 0.79

  Alignments for each domain:
  == domain 1  score: 8.1 bits;  conditional E-value: 0.0014
                HHHHH-SS-SSCE-HHHHH CS
   EF-hand_5  4 tFqaiDlNgDGkIskeELk 22
                +F a D+N+D kIsk E++
  KOO22749.1 71 AFLAWDTNKDEKISKMEWR 89
                68888*************7 PP

  == domain 2  score: 23.5 bits;  conditional E-value: 1.9e-08
                 HHHHHHHH-SS-SSCE-HHHHH CS
   EF-hand_5   1 lkdtFqaiDlNgDGkIskeELk 22 
                 ++++F+++DlN++G+I++eEL+
  KOO22749.1 106 IDELFDKFDLNKSGFINAEELE 127
                 5779****************95 PP

  == domain 3  score: 11.4 bits;  conditional E-value: 0.00012
                 -SS-SSCE-HHHHH CS
   EF-hand_5   9 DlNgDGkIskeELk 22 
                 D++g Gk++k E++
  KOO22749.1 216 DTDGNGKVDKLEFR 229
                 9************7 PP

  == domain 4  score: 2.1 bits;  conditional E-value: 0.11
                 HHHHHHHH-SS-SSCE-HHHHH CS
   EF-hand_5   1 lkdtFqaiDlNgDGkIskeELk 22 
                 l+d+F  +D +g+  + + EL+
  KOO22749.1 247 LDDLFTSLDSDGSKELEMKELQ 268
                 7899********9777777776 PP

>> EF-hand_8  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.2   0.0     0.028        39      35      47 ..      75      87 ..      69      90 .. 0.86
   2 !   13.2   0.1   4.5e-05     0.062      26      47 ..     104     125 ..     102     129 .. 0.93
   3 !    7.2   0.1    0.0032       4.4      36      50 ..     216     230 ..     215     234 .. 0.91
   4 ?    5.5   0.1     0.011        15      13      40 ..     234     259 ..     230     262 .. 0.84
   5 ?    0.9   0.0       0.3   4.1e+02      26      41 ..     303     319 ..     293     319 .. 0.84

  Alignments for each domain:
  == domain 1  score: 4.2 bits;  conditional E-value: 0.028
   EF-hand_8 35 fDtdgdGkisfeE 47
                 Dt++d kis++E
  KOO22749.1 75 WDTNKDEKISKME 87
                6***********9 PP

  == domain 2  score: 13.2 bits;  conditional E-value: 4.5e-05
   EF-hand_8  26 eevdilfrefDtdgdGkisfeE 47 
                 +++d+lf++fD++++G i+ eE
  KOO22749.1 104 HKIDELFDKFDLNKSGFINAEE 125
                 689***************9998 PP

  == domain 3  score: 7.2 bits;  conditional E-value: 0.0032
   EF-hand_8  36 DtdgdGkisfeEFcv 50 
                 Dtdg+Gk+++ EF +
  KOO22749.1 216 DTDGNGKVDKLEFRF 230
                 9***********975 PP

  == domain 4  score: 5.5 bits;  conditional E-value: 0.011
   EF-hand_8  13 il.rilglkkglseeevdilfrefDtdgd 40 
                 +l +  gl+   s+ e+d+lf  +D dg+
  KOO22749.1 234 ALgS--GLQA-ASDAELDDLFTSLDSDGS 259
                 4433..8886.9***************96 PP

  == domain 5  score: 0.9 bits;  conditional E-value: 0.3
   EF-hand_8  26 ee.vdilfrefDtdgdG 41 
                 +e ++il++ +D+dg G
  KOO22749.1 303 QErATILIDNVDMDGYG 319
                 55589*********965 PP

>> Transcrip_act  Transcriptional activator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.3   0.2     0.051        70      52     124 ..       8      83 ..       1      94 [. 0.76
   2 !   17.4   0.8   2.2e-06    0.0031      22      72 ..     124     173 ..     100     184 .. 0.90
   3 ?   -2.7   0.1       3.5   4.9e+03      60      94 ..     279     295 ..     258     314 .. 0.47

  Alignments for each domain:
  == domain 1  score: 3.3 bits;  conditional E-value: 0.051
  Transcrip_act  52 qLgrveeetkrLaeireeLealadPlrkevavvrkkid.avnrelkplgqscqkkekey..kealeafneknkeka 124
                    q  rve  +  + e  e+Lea+a  l k v+ +   ++ ++ r l +lg s +   k     ea+ a++  + ek 
     KOO22749.1   8 QKERVEFPSSYFFEESEQLEAFAAKLEKSVEEIGDDLEaKIGRGLEALGISGKNTSKMLarDEAFLAWDTNKDEKI 83 
                    556777777777788899***************9999735999999999988776665421466667776666664 PP

  == domain 2  score: 17.4 bits;  conditional E-value: 2.2e-06
  Transcrip_act  22 evsrsalsafkakeeeierkklevrekveaqLgrveeetkrLaeireeLea 72 
                    e    al+a++++ e+ie    e+r++  ++L  v +e +r+a+i  eLea
     KOO22749.1 124 EELEPALAAWRKHTEDIETEAAEIRNRC-SELRTVAKEIRRVARITAELEA 173
                    455679*********************8.5799999*************97 PP

  == domain 3  score: -2.7 bits;  conditional E-value: 3.5
  Transcrip_act  60 tkrLaeireeLealadPlrkevavvrkkidavnre 94 
                    +k +a                   +  ++ +v   
     KOO22749.1 279 AKHVAD------------------LEEQVVVVKAM 295
                    333333..................33333333333 PP

>> Dockerin_1  Dockerin type I domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.5   0.0      0.13   1.7e+02      36      49 ..      74      87 ..      65      96 .. 0.75
   2 ?    6.4   0.0    0.0075        10       3      47 ..      76     123 ..      74     127 .. 0.85
   3 ?    3.9   0.1     0.043        60      28      50 ..     206     228 ..     195     256 .. 0.79

  Alignments for each domain:
  == domain 1  score: 2.5 bits;  conditional E-value: 0.13
                GGSTT-SSCESHHH CS
  Dockerin_1 36 aaDvNgDGrvnalD 49
                a D N+D +++++ 
  KOO22749.1 74 AWDTNKDEKISKME 87
                78999999998765 PP

  == domain 2  score: 6.4 bits;  conditional E-value: 0.0075
                 ETTSSSC-SHHHHHHHHHHCT...SSEBTTSCCCHGGGSTT-SSCESH CS
  Dockerin_1   3 DVNgDgkVnalDalliinyln...qregqssssngkaaDvNgDGrvna 47 
                 D N+D+k++ +   + i+ l    +++  + ++  +++D+N+ G +na
  KOO22749.1  76 DTNKDEKISKMEWRVHIRKLPgcqNDSIHKIDELFDKFDLNKSGFINA 123
                 889999999999999999999887778888888889999999999998 PP

  == domain 3  score: 3.9 bits;  conditional E-value: 0.043
                 TTSCCCHGGGSTT-SSCESHHHH CS
  Dockerin_1  28 qssssngkaaDvNgDGrvnalDa 50 
                  s s+ +   D +g+G+v++l +
  KOO22749.1 206 ISPSNVQGGWDTDGNGKVDKLEF 228
                 55566666789999999998876 PP

>> Med9  RNA polymerase II transcription mediator complex subunit 9
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.2   0.00017      0.23      18      58 ..     134     174 ..     101     180 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 0.00017
        Med9  18 nlsskdletktgelrhkLkkarelirelpgidrsveeqeae 58 
                 +++++d+et+++e+r++ ++ r++ +e+  + r ++e eae
  KOO22749.1 134 RKHTEDIETEAAEIRNRCSELRTVAKEIRRVARITAELEAE 174
                 57889**********************99988877777765 PP

>> DUF4618  Domain of unknown function (DUF4618)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.1       1.4     2e+03     203     217 ..      24      38 ..       3      48 .. 0.51
   2 ?    3.6   0.1     0.027        37     186     229 ..     121     164 ..     114     172 .. 0.90
   3 ?   10.2   0.3   0.00027      0.37      60     102 ..     259     301 ..     246     310 .. 0.86

  Alignments for each domain:
  == domain 1  score: -2.0 bits;  conditional E-value: 1.4
     DUF4618 203 eeleeeipeLkaeve 217
                 e+le    +L+++ve
  KOO22749.1  24 EQLEAFAAKLEKSVE 38 
                 222222222222222 PP

  == domain 2  score: 3.6 bits;  conditional E-value: 0.027
     DUF4618 186 lenqvlkkeiekfrefieeleeeipeLkaeveqLqaqaeeprev 229
                 ++ ++l+  ++ +r++ e++e e  e+++   +L+  a+e+r v
  KOO22749.1 121 INAEELEPALAAWRKHTEDIETEAAEIRNRCSELRTVAKEIRRV 164
                 567788889999****************************9976 PP

  == domain 3  score: 10.2 bits;  conditional E-value: 0.00027
     DUF4618  60 sskkqleqakaeLqeweekeekklekLeqqleqlnakvqklqe 102
                 s++ +++++++ L  w++  +k++++Le+q+  ++a+v+ ++e
  KOO22749.1 259 SKELEMKELQSALLMWQSAAAKHVADLEEQVVVVKAMVKPVRE 301
                 55667899*****************************997655 PP

>> DUF3740  Sulfatase protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.6    0.0002      0.28      98     138 ..     124     164 ..      57     175 .. 0.77

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 0.0002
     DUF3740  98 dviyesekaWkdsklqiDkeIelLkdKiknLkevkghlrek 138
                 +++   + aW+++   i+ e   ++++ ++L+ v +++r+ 
  KOO22749.1 124 EELEPALAAWRKHTEDIETEAAEIRNRCSELRTVAKEIRRV 164
                 57888999****************************99985 PP

>> BLOC1_2  Biogenesis of lysosome-related organelles complex-1 subunit 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.6   0.0       0.5   6.9e+02      75      90 ..      24      39 ..      19      49 .. 0.57
   2 ?    7.9   0.0    0.0026       3.6      35      86 ..     122     173 ..     113     179 .. 0.66
   3 ?    0.1   0.1      0.72   9.9e+02      31      59 ..     277     305 ..     248     315 .. 0.67

  Alignments for each domain:
  == domain 1  score: 0.6 bits;  conditional E-value: 0.5
     BLOC1_2 75 teLeeavseLDeyske 90
                ++Le+ +++L++ + e
  KOO22749.1 24 EQLEAFAAKLEKSVEE 39
                4555555555554443 PP

  == domain 2  score: 7.9 bits;  conditional E-value: 0.0026
     BLOC1_2  35 kykklkdvaaslekkleklnekyeelqpylqqidqiekqvteLeeavseLDe 86 
                 + ++l+ ++a  +k  e+++ + +e+++ ++++  + k++++   + +eL++
  KOO22749.1 122 NAEELEPALAAWRKHTEDIETEAAEIRNRCSELRTVAKEIRRVARITAELEA 173
                 5566666777777777777777777777777777777777777766666654 PP

  == domain 3  score: 0.1 bits;  conditional E-value: 0.72
     BLOC1_2  31 aasekykklkdvaaslekkleklnekyee 59 
                 aa++++++l++++  +++ ++ ++e +e 
  KOO22749.1 277 AAAKHVADLEEQVVVVKAMVKPVREAQER 305
                 56666666666666666666666666555 PP

>> Syntaxin-6_N  Syntaxin 6, N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.0   0.0      0.47   6.5e+02      35      58 ..      22      45 ..       2      71 .. 0.77
   2 ?    5.5   0.2     0.018        25      58      98 ..     124     164 ..     101     178 .. 0.83
   3 ?    4.0   0.2     0.053        73      30      69 ..     257     294 ..     240     314 .. 0.76

  Alignments for each domain:
  == domain 1  score: 1.0 bits;  conditional E-value: 0.47
  Syntaxin-6_N 35 tseeldetrteLrkalrsiewdle 58
                  +se+l+    +L+k++++i  dle
    KOO22749.1 22 ESEQLEAFAAKLEKSVEEIGDDLE 45
                  678888888889988888888876 PP

  == domain 2  score: 5.5 bits;  conditional E-value: 0.018
  Syntaxin-6_N  58 edLeetvriveknpskfkidekelsrrrafveevreevkem 98 
                   e+Le + ++ +k+ ++ + +++e+++r + ++ v +e++++
    KOO22749.1 124 EELEPALAAWRKHTEDIETEAAEIRNRCSELRTVAKEIRRV 164
                   77888888888887888888888888888888888887764 PP

  == domain 3  score: 4.0 bits;  conditional E-value: 0.053
  Syntaxin-6_N  30 dtssstseeldetrteLrkalrsiewdledLeetvrivek 69 
                   d+  s++ e++e+++ L    + + + + dLee v +v++
    KOO22749.1 257 DG--SKELEMKELQSALLMWQSAAAKHVADLEEQVVVVKA 294
                   33..3478899999999999999************88765 PP

>> TPR_MLP1_2  TPR/MLP1/MLP2-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.6   0.1      0.41   5.6e+02      65      88 ..      22      45 ..      16      50 .. 0.49
   2 ?    8.6   0.4    0.0013       1.9      85     116 ..     124     155 ..     116     159 .. 0.92
   3 ?    2.4   0.4      0.11   1.5e+02      49      83 ..     272     306 ..     255     313 .. 0.67

  Alignments for each domain:
  == domain 1  score: 0.6 bits;  conditional E-value: 0.41
  TPR_MLP1_2 65 elnelkaeiaelkaeaesakaele 88
                e+++l+a +a+l++++e+   +le
  KOO22749.1 22 ESEQLEAFAAKLEKSVEEIGDDLE 45
                344444444444444444443333 PP

  == domain 2  score: 8.6 bits;  conditional E-value: 0.0013
  TPR_MLP1_2  85 aeleeseesweeqkeelekelselekriedln 116
                 +ele + ++w ++ e +e+e +e+++r+ +l 
  KOO22749.1 124 EELEPALAAWRKHTEDIETEAAEIRNRCSELR 155
                 68889999**********************97 PP

  == domain 3  score: 2.4 bits;  conditional E-value: 0.11
  TPR_MLP1_2  49 lvkhaedvkelqalreelnelkaeiaelkaeaesa 83 
                 l+ +++++k +++l e++  +ka ++ ++++ e+a
  KOO22749.1 272 LMWQSAAAKHVADLEEQVVVVKAMVKPVREAQERA 306
                 55666777777777777777776666666666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (327 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1107  (0.0617435); expected 358.6 (0.02)
Passed bias filter:                      772  (0.0430587); expected 358.6 (0.02)
Passed Vit filter:                        71  (0.00396006); expected 17.9 (0.001)
Passed Fwd filter:                        13  (0.000725082); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 0.55u 0.27s 00:00:00.82 Elapsed: 00:00:00.42
# Mc/sec: 2317.55
//
Query:       KOO22750.1  [L=546]
Description: sphingosine-1-phosphate lyase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.4e-17   62.7   0.0    3.9e-17   62.0   0.0    1.2  1  Pyridoxal_deC  Pyridoxal-dependent decarboxylase conserved do
    9.9e-08   31.3   0.0    2.9e-07   29.8   0.0    1.7  1  Aminotran_5    Aminotransferase class-V


Domain annotation for each model (and alignments):
>> Pyridoxal_deC  Pyridoxal-dependent decarboxylase conserved domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.0   0.0   4.4e-21   3.9e-17      53     369 ..     149     443 ..     140     448 .. 0.82

  Alignments for each domain:
  == domain 1  score: 62.0 bits;  conditional E-value: 4.4e-21
                    HHHHHHHHHHHHT-BTSSTTTSHHHHHHHHHHHHHHHHHTT--GGGTCCT-EEEEESSHHHHHHHHHHHHHHHHHHHHHHHTTTS.HHHHHCCEEE CS
  Pyridoxal_deC  53 isllgdlLadainkngftweesPaltelevvvldwlaellglpeeflekegggvlqvgssestllallAartkvikemkekgkelkeaeildklvl 148
                     +l g + ++ + +n ++    P l + e  v+ +   +++      e  + g l++g++e++lla lA r+  +    ++g           + +
     KOO22750.1 149 ATLQGRIWSQYVDTNALYPGVFPTLRKYEAEVIAMTLSIVHGH----EAGACGLLASGGTEAVLLAALAYRETGR----ARGI--------TEPQI 228
                    5566666666677777777777777777777777777777665....22378*****************997654....4553........35889 PP

                    EEETTS-HHHHHHHHHHT-EEEEE--BTTTBB-HHHHHHHHHHHHCTT.EEEEEEEEBS-TTT-BB--HHHHHHHHHHCT-EEEEE-TTGGGG..G CS
  Pyridoxal_deC 149 ytsdqahssvekaalvlgvklrvipldengklrgaalekaieedkekGlipffvvatlGttvlgaFddlkelgdicekydlwlHvDAAyaGsa..f 242
                     ++  ah ++ ka  ++g++l+ +pl+++     ++l++a  +   +  ++  + a + +   g  d ++elg +  +  + lHvD   +G +  f
     KOO22750.1 229 ICAISAHPAITKACHYFGIELIKVPLEPS----SMSLRAAAVRPYLNSQTV-AIYASAPSFAHGVIDAIEELGALAMEARVGLHVDNCLGGFLlsF 319
                    9*99***********************94....488888888877776777.899999*********************************54335 PP

                    GSGGGGG...GGTTGGGESEEEEECCCCTS--SS-EEEEESSCCGCHHHH-EEECCCT.TTTTTSEECCCGSSSSSG.HHTHHHHHHHHHHHHHHH CS
  Pyridoxal_deC 243 icpeirh...llkgieradSitvnphKlllvlldcsalivkdkealqqalqleaeYLehedsdvaadlgtkaiplsr.rvrilklwfvlralGveg 334
                    +++e      +++ ++ + S+++  hK++ ++ ++s++ ++  e l +a      Y   +d +    + t +++ sr    ++  w  l  +G  g
     KOO22750.1 320 MAREGLLtkpFDFAVPGVSSMSIDVHKYGCAPKGVSVVAFRTAE-LRRAT-----YVPSTD-GCEGLYVTPTLQGSRsGAIMATAWATLLHVGGAG 408
                    7776322556*******************************865.66665.....888555.888999*********55555789*********** PP

                    HHHHHHHHHHHHHHHHHHHHTTTTEEECSTTBSSE CS
  Pyridoxal_deC 335 lqnqirksvelakyleklirkderfeivaevelgl 369
                    + ++ r+     +++++ +r++ +  ++a+     
     KOO22750.1 409 YAAKAREISACHEKIKAFVRATPPLRLCADSDACT 443
                    ****************************9765544 PP

>> Aminotran_5  Aminotransferase class-V
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.8   0.0   3.2e-11   2.9e-07      67     342 ..     200     474 ..     197     487 .. 0.78

  Alignments for each domain:
  == domain 1  score: 29.8 bits;  conditional E-value: 3.2e-11
                  ESSHHHHHHHHHHHCCCC....-TTTSEEEEETTSHGGGTHHHHHHHHHHTEEEEEEEBETT.SCBEGGGHHHH--TTEEEEEEESBETTTTEB--HH CS
  Aminotran_5  67 tsGtteainlvalslars....lkpgdeivvteaehhanlvpwqelakrtgakvkvipldee.geldldelekllnektklvaithvsnvtGtiqpve 159
                   sG+tea+ l+al+++++      ++ +i+   + h a +    ++++  g+++ ++pl++   +l+  +++ +ln +t +++ ++ s ++G+i+ +e
   KOO22750.1 200 ASGGTEAVLLAALAYRETgrarGITEPQIICAISAHPAIT----KACHYFGIELIKVPLEPSsMSLRAAAVRPYLNSQTVAIYASAPSFAHGVIDAIE 293
                  69*************8776433234456777777777766....9999***********98625688999**************************** PP

                  HHHHHHHHTT-EEEEE-T...........TTTTTS---HHHHTESEEEEETTT.TTSSTT-EEEEEEHHHHHTS..SS.STTSEEEEET.TEEEEHCT CS
  Aminotran_5 160 eigklakkkgalvlvDaa...........qavghipidvkklgvDflafsghK.llgPtGiGvlyvrkellekleplllggemveevsl.eettfaea 244
                  e+g+la ++ + ++vD +            +++ +p+d++  gv  +++  hK  ++P+G++v+ +r++ l ++       ++v + +  e+     +
   KOO22750.1 294 ELGALAMEARVGLHVDNClggfllsfmarEGLLTKPFDFAVPGVSSMSIDVHKyGCAPKGVSVVAFRTAELRRA-------TYVPSTDGcEGLY--VT 382
                  ****************6633333333333678999******************88*************988888.......2222222212222..23 PP

                  TGGGS.SS--HHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCTSTTEEEES.-B-CTCBSEEEEEETTCSHHHHHHHHHHTTEEEEEE-TTT CS
  Aminotran_5 245 pskfeaGTpnvagiiglgaaleyleeigleaiekhekelaeyllerlkslpgvrlygpdkaerrasivsfnfkgvhaedvatlLdeegIavrsGhhca 342
                  p+ ++ G+   a +    a+l ++   g++a +++  + +e++++ +++ p +rl  +  a+ +a +v +  ++++   +atlL+++g  v +G++ a
   KOO22750.1 383 PT-LQ-GSRSGAIMATAWATLLHVGGAGYAAKAREISACHEKIKAFVRATPPLRL--C--ADSDACTVPVCSETLNVYALATLLEQKGWSVFTGQKPA 474
                  33.23.5666566666667777888889999999999999999999999999999..4..47788888888899999999999999999999998877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (546 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       288  (0.0160634); expected 358.6 (0.02)
Passed bias filter:                      257  (0.0143343); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.50u 0.28s 00:00:00.78 Elapsed: 00:00:00.42
# Mc/sec: 3862.61
//
Query:       KOO22751.1  [L=431]
Description: sodium potassium calcium exchanger 1 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.2e-23   83.8  15.2    1.6e-23   83.3  15.2    1.1  1  Na_Ca_ex      Sodium/calcium exchanger protein
      7e-12   45.6   0.2    2.8e-07   30.9   0.0    2.4  2  EF-hand_7     EF-hand domain pair
    2.8e-11   42.4   0.1      0.013   15.4   0.0    3.4  3  EF-hand_6     EF-hand domain
    7.2e-11   40.8   0.3       0.05   13.2   0.1    3.6  3  EF-hand_1     EF hand
    6.4e-08   31.7   1.1      0.079   12.5   0.0    3.5  3  EF-hand_5     EF hand
     0.0002   21.1   1.6       0.15   12.0   0.4    2.9  2  EF-hand_8     EF-hand domain pair
     0.0025   18.1   0.0       0.42   10.9   0.0    2.3  2  SPARC_Ca_bdg  Secreted protein acidic and rich in cysteine Ca
  ------ inclusion threshold ------
       0.17   12.3   7.9        4.1    7.8   5.3    2.5  2  DUF3995       Protein of unknown function (DUF3995)
       0.27   11.5   4.8        1.8    8.8   0.3    3.3  3  Dockerin_1    Dockerin type I domain


Domain annotation for each model (and alignments):
>> Na_Ca_ex  Sodium/calcium exchanger protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   83.3  15.2   8.3e-27   1.6e-23       3     148 ..      14     155 ..      11     156 .. 0.82

  Alignments for each domain:
  == domain 1  score: 83.3 bits;  conditional E-value: 8.3e-27
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHTHHHHHHHHHHBTTSSCECCH CS
    Na_Ca_ex   3 fvlfilslllisvladflvssaeeiakslgisgsvlGltllAlgnslpElissiiaaltgevdlaignvlGsnifnlllviGlialigslkvdseslkl 101
                 ++++ ++l++ +++ ++lv++++++++ ++is+++++ t++A+g+s+pEl++s+i  + g  d+++g+v+Gs+++n+llv+G++a+++     +e+l l
  KOO22751.1  14 VGILYMFLVIAITCDEYLVPALDVMVQRFEISPAIASATFMAAGGSAPELFVSLIGTMYG-SDIGVGTVVGSAAINMLLVVGTCAVFA-----RETLSL 106
                 4566667777788999******************************************77.8*************************4.....566677 PP

                 HH.HHHHHHHHHHHHHHHHTCHHHHH..HTEEHHHHHHHHHHHHHHHHHH CS
    Na_Ca_ex 102 dl.gllllvallllllvlllllplfv..pgrltvleglvllllYalylvl 148
                 ++ ++l   ++++l+l+++   +l +  p r++++e+ +ll+lYa+y +l
  KOO22751.1 107 TWwPFLRDSVCCSLALLAV-AAVLGIltPSRVELWEAGALLGLYACYCLL 155
                 7755555555555443333.323322569******************876 PP

>> EF-hand_7  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.9   0.0   1.4e-10   2.8e-07       6      70 ..     228     287 ..     223     288 .. 0.84
   2 !   12.7   0.0   6.9e-05      0.14       1      30 [.     295     324 ..     295     351 .. 0.81

  Alignments for each domain:
  == domain 1  score: 30.9 bits;  conditional E-value: 1.4e-10
   EF-hand_7   6 eaFkelDtdgdgyldkeellrllrkifqgagegsklsdee.lellfkefDtdkdGvisfdEFlkly 70 
                  aF  lD+dg+g+++ + +++ll+        g +  +e+ +e+l   +D++ dG+isf EF  +y
  KOO22751.1 228 SAFGRLDVDGNGFIEAAAVRQLLEE------LGHSECSEAmIEALDARLDQNEDGKISFFEFDSWY 287
                 68999*******************5......55555554449999999**************8887 PP

  == domain 2  score: 12.7 bits;  conditional E-value: 6.9e-05
   EF-hand_7   1 eeklkeaFkelDtdgdgyldkeellrllrk 30 
                 e+kl +aF+  D++gdg +d++  ++ll++
  KOO22751.1 295 EQKLTRAFRTCDSNGDGTVDEDGAKNLLEH 324
                 5899****************9876666665 PP

>> EF-hand_6  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.0   6.4e-06     0.013       4      31 .]     228     254 ..     225     254 .. 0.91
   2 !    9.4   0.0   0.00054       1.1       9      25 ..     270     286 ..     268     289 .. 0.88
   3 !   13.5   0.0   2.6e-05     0.051       2      27 ..     298     323 ..     297     331 .. 0.85

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 6.4e-06
   EF-hand_6   4 eaFklfDkdgdGkidaeElrkalrkalg 31 
                 +aF  +D+dg+G+i a+ +r++l  +lg
  KOO22751.1 228 SAFGRLDVDGNGFIEAAAVRQLLE-ELG 254
                 79********************99.776 PP

  == domain 2  score: 9.4 bits;  conditional E-value: 0.00054
   EF-hand_6   9 fDkdgdGkidaeElrka 25 
                 +D++ dGki++ E+ ++
  KOO22751.1 270 LDQNEDGKISFFEFDSW 286
                 8*************876 PP

  == domain 3  score: 13.5 bits;  conditional E-value: 2.6e-05
   EF-hand_6   2 lreaFklfDkdgdGkidaeElrkalr 27 
                 l +aF+  D +gdG++d +  +++l 
  KOO22751.1 298 LTRAFRTCDSNGDGTVDEDGAKNLLE 323
                 5689*************997777665 PP

>> EF-hand_1  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.8   0.0   6.9e-05      0.14       4      27 ..     228     251 ..     225     253 .. 0.85
   2 !   12.0   0.0     6e-05      0.12       9      24 ..     270     285 ..     268     289 .. 0.87
   3 !   13.2   0.1   2.5e-05      0.05       2      20 ..     298     316 ..     297     316 .. 0.89

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 6.9e-05
                 HHHHHHTTTSSSEEEHHHHHHHHH CS
   EF-hand_1   4 eiFrefDkDgdGkIdfeEfkellk 27 
                  +F  +D+Dg+G+I+    ++ll+
  KOO22751.1 228 SAFGRLDVDGNGFIEAAAVRQLLE 251
                 68999*********9998888876 PP

  == domain 2  score: 12.0 bits;  conditional E-value: 6e-05
                 HTTTSSSEEEHHHHHH CS
   EF-hand_1   9 fDkDgdGkIdfeEfke 24 
                 +D++ dGkI+f Ef +
  KOO22751.1 270 LDQNEDGKISFFEFDS 285
                 8*************65 PP

  == domain 3  score: 13.2 bits;  conditional E-value: 2.5e-05
                 HHHHHHHHTTTSSSEEEHH CS
   EF-hand_1   2 lkeiFrefDkDgdGkIdfe 20 
                 l ++Fr  D +gdG++d +
  KOO22751.1 298 LTRAFRTCDSNGDGTVDED 316
                 5689************986 PP

>> EF-hand_5  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.2   0.0   0.00091       1.8       4      18 ..     229     243 ..     226     244 .. 0.86
   2 !   12.5   0.0     4e-05     0.079       7      21 ..     269     283 ..     268     292 .. 0.91
   3 !    7.9   0.1    0.0011       2.2       5      17 ..     302     314 ..     299     316 .. 0.84

  Alignments for each domain:
  == domain 1  score: 8.2 bits;  conditional E-value: 0.00091
                 HHHHH-SS-SSCE-H CS
   EF-hand_5   4 tFqaiDlNgDGkIsk 18 
                 +F ++D++g G+I +
  KOO22751.1 229 AFGRLDVDGNGFIEA 243
                 699**********75 PP

  == domain 2  score: 12.5 bits;  conditional E-value: 4e-05
                 HH-SS-SSCE-HHHH CS
   EF-hand_5   7 aiDlNgDGkIskeEL 21 
                 ++D N DGkIs+ E+
  KOO22751.1 269 RLDQNEDGKISFFEF 283
                 58************9 PP

  == domain 3  score: 7.9 bits;  conditional E-value: 0.0011
                 HHHH-SS-SSCE- CS
   EF-hand_5   5 FqaiDlNgDGkIs 17 
                 F+  D NgDG+++
  KOO22751.1 302 FRTCDSNGDGTVD 314
                 8889*******99 PP

>> EF-hand_8  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.0   0.4   7.3e-05      0.15      22      48 ..     257     283 ..     237     284 .. 0.72
   2 !    7.1   0.0    0.0025       4.9      27      54 ..     297     324 ..     293     325 .. 0.84

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 7.3e-05
   EF-hand_8  22 glseeevdilfrefDtdgdGkisfeEF 48 
                  +se  +++l  ++D+++dGkisf EF
  KOO22751.1 257 ECSEAMIEALDARLDQNEDGKISFFEF 283
                 46677777777789************9 PP

  == domain 2  score: 7.1 bits;  conditional E-value: 0.0025
   EF-hand_8  27 evdilfrefDtdgdGkisfeEFcvller 54 
                 +++  fr+ D +gdG+++ +   +lle+
  KOO22751.1 297 KLTRAFRTCDSNGDGTVDEDGAKNLLEH 324
                 5566799************998888887 PP

>> SPARC_Ca_bdg  Secreted protein acidic and rich in cysteine Ca binding region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.9   0.0   0.00021      0.42      51     110 ..     221     283 ..     213     285 .. 0.80
   2 !   10.3   0.0   0.00034      0.68      62     106 ..     269     314 ..     268     317 .. 0.86

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00021
  SPARC_Ca_bdg  51 eckepvawkFsklDtnsdkvlsksELaplraplvklehCikpflescDa....dkdkkislkEw 110
                   + k +va  F +lD++ +++++ + +++l ++l +  +C+++++e+ Da    ++d+kis  E+
    KOO22751.1 221 KLKRAVASAFGRLDVDGNGFIEAAAVRQLLEELGH-SECSEAMIEALDArldqNEDGKISFFEF 283
                   678899999********************998765.5699999987654222278888888887 PP

  == domain 2  score: 10.3 bits;  conditional E-value: 0.00034
  SPARC_Ca_bdg  62 klDtnsdkvlsksELaplra.plvklehCikpflescDadkdkkis 106
                   +lD+n+d+ +s  E ++ +      +e+  ++ +++cD++ d++++
    KOO22751.1 269 RLDQNEDGKISFFEFDSWYVaRALVVEQKLTRAFRTCDSNGDGTVD 314
                   79*************9976514577899999************997 PP

>> DUF3995  Protein of unknown function (DUF3995)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.8   5.3     0.002       4.1      12      89 ..      55     130 ..      47     133 .. 0.72
   2 ?    4.6   0.0      0.02        40      35      70 ..     133     168 ..     130     175 .. 0.85

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 0.002
     DUF3995  12 alGGtwgleslaeavvgekegsa..vPsavatlavallllaaAllvlala....rllgaplssrllrlaawvvaavlllRgilg 89 
                 a+GG+ +  +l  +++g+  gs+  v ++v+ +a+ +ll+++ ++v+a+      +++  + s           a+l++ ++lg
  KOO22751.1  55 AAGGSAP--ELFVSLIGTMYGSDigVGTVVGSAAINMLLVVGTCAVFAREtlslTWWPFLRDSVCC------SLALLAVAAVLG 130
                 8999999..99999999999998998899********************93333333333334444......444444444444 PP

  == domain 2  score: 4.6 bits;  conditional E-value: 0.02
     DUF3995  35 vPsavatlavallllaaAllvlalarllgaplssrl 70 
                 +Ps+v ++  ++ll++ A+  l++ r+++ ++ss  
  KOO22751.1 133 TPSRVELWEAGALLGLYACYCLLMPRHQTLRRSSLH 168
                 69**********************998877766655 PP

>> Dockerin_1  Dockerin type I domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.1   0.0      0.12   2.3e+02      36      48 ..     232     244 ..     221     254 .. 0.75
   2 ?    8.8   0.3   0.00091       1.8       3      47 ..     271     315 ..     232     326 .. 0.85
   3 ?   -0.8   0.6      0.92   1.8e+03       3      12 ..     390     399 ..     380     403 .. 0.78

  Alignments for each domain:
  == domain 1  score: 2.1 bits;  conditional E-value: 0.12
                 GGSTT-SSCESHH CS
  Dockerin_1  36 aaDvNgDGrvnal 48 
                  +Dv+g+G + a 
  KOO22751.1 232 RLDVDGNGFIEAA 244
                 6789999888775 PP

  == domain 2  score: 8.8 bits;  conditional E-value: 0.00091
                 ETTSSSC-S..HHHHHHHHHHCTSSEBTTSCCCHGGGSTT-SSCESH CS
  Dockerin_1   3 DVNgDgkVn..alDalliinylnqregqssssngkaaDvNgDGrvna 47 
                 D N+Dgk++    D   + ++l   ++q+ +   +++D NgDG+v+ 
  KOO22751.1 271 DQNEDGKISffEFDSWYVARALV--VEQKLTRAFRTCDSNGDGTVDE 315
                 78999999855579999999999..9999999999999999999986 PP

  == domain 3  score: -0.8 bits;  conditional E-value: 0.92
                 ETTSSSC-SH CS
  Dockerin_1   3 DVNgDgkVna 12 
                 DV++D+ V a
  KOO22751.1 390 DVDNDEAVRA 399
                 7888877755 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (431 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       478  (0.0266607); expected 358.6 (0.02)
Passed bias filter:                      346  (0.0192983); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.48u 0.27s 00:00:00.75 Elapsed: 00:00:00.40
# Mc/sec: 3197.94
//
Query:       KOO22752.1  [L=249]
Description: potassium-dependent sodium-calcium exchanger [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.9e-22   78.8  16.4    5.8e-22   78.3  16.4    1.2  1  Na_Ca_ex  Sodium/calcium exchanger protein


Domain annotation for each model (and alignments):
>> Na_Ca_ex  Sodium/calcium exchanger protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   78.3  16.4   3.3e-26   5.8e-22       2     143 ..      74     215 ..      73     219 .. 0.83

  Alignments for each domain:
  == domain 1  score: 78.3 bits;  conditional E-value: 3.3e-26
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHTHHHHHHHHHH......BTT CS
    Na_Ca_ex   2 lfvlfilslllisvladflvssaeeiakslgisgsvlGltllAlgnslpElissiiaaltgevdlaignvlGsnifnlllviGlialigs......lkv 94 
                 + v+++ +l+++++++  +v +a+ +a+++gi+ +vlGlt+lA+g+s+p+l++++i+a +ge+d a + v+G  +f++l++++l++l+        ++v
  KOO22752.1  74 YPVTLVGALAWVAIASYSMVTWAAIVANVFGIPHAVLGLTFLAAGTSVPDLLTAVIVAQQGEADAAASFVVGRSVFDVLVGLPLPWLVYNlyygqaAVV 172
                 7899************************************************************************************88544444344 PP

                 SSCECCHHHHHHHHHHHHHHHHHHHTCHHHHHHTEEHHHHHHHHHHHHH CS
    Na_Ca_ex  95 dseslkldlgllllvallllllvlllllplfvpgrltvleglvllllYa 143
                   esl  +l +l+ +++l+++++++      + +r+t+  g +l+l+Ya
  KOO22752.1 173 GAESLFGSLLILFSMVALITCTIAC------FGWRMTRCLGYCLFLFYA 215
                 4444333333444444444444444......46***************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (249 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       755  (0.0421105); expected 358.6 (0.02)
Passed bias filter:                      334  (0.018629); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.21s 00:00:00.63 Elapsed: 00:00:00.37
# Mc/sec: 2007.27
//
Query:       KOO22753.1  [L=782]
Description: serine threonine-protein phosphatase 4 regulatory subunit 4, partial [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    0.00015   21.7  19.5        2.3    8.7   0.2    7.6  7  HEAT           HEAT repeat
     0.0063   17.1   0.0       0.78   10.4   0.0    2.8  2  Vac14_Fab1_bd  Vacuolar 14 Fab1-binding region


Domain annotation for each model (and alignments):
>> HEAT  HEAT repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.1   0.5   0.00087       7.8       2      28 ..     222     248 ..     221     251 .. 0.86
   2 !    8.7   0.0   0.00026       2.3       6      28 ..     265     287 ..     263     290 .. 0.85
   3 ?    3.5   0.1     0.012   1.1e+02       5      29 ..     377     402 ..     373     404 .. 0.76
   4 ?   -2.3   0.1      0.91   8.2e+03       4      19 ..     417     433 ..     415     435 .. 0.83
   5 ?    1.3   0.1     0.063   5.7e+02       1      24 [.     556     580 ..     556     581 .. 0.80
   6 !    8.7   0.2   0.00026       2.3       4      23 ..     645     664 ..     644     664 .. 0.92
   7 ?   -2.1   0.0      0.76   6.8e+03       6      20 ..     681     695 ..     679     698 .. 0.76

  Alignments for each domain:
  == domain 1  score: 7.1 bits;  conditional E-value: 0.00087
                 HHHHHHHHT-SSHHHHHHHHHHHHHHH CS
        HEAT   2 lPlllkllsDpspeVReaAakaLgala 28 
                 l + l++++D++ +VR++ ++ L  +a
  KOO22753.1 222 LSHALSMCQDTELRVRCSMCEQLQCIA 248
                 667799************999998777 PP

  == domain 2  score: 8.7 bits;  conditional E-value: 0.00026
                 HHHHT-SSHHHHHHHHHHHHHHH CS
        HEAT   6 lkllsDpspeVReaAakaLgala 28 
                 l+l +D++p VR+aA+++ +al+
  KOO22753.1 265 LELTMDEHPGVRAAAFECGTALL 287
                 57779*************88776 PP

  == domain 3  score: 3.5 bits;  conditional E-value: 0.012
                 HHHHH.T-SSHHHHHHHHHHHHHHHH CS
        HEAT   5 llkll.sDpspeVReaAakaLgalae 29 
                 l+++  ++   e R a++ aL+a a+
  KOO22753.1 377 LVEAFaRSVVTEHRLACVDALVAYAS 402
                 5555447778899********99876 PP

  == domain 4  score: -2.3 bits;  conditional E-value: 0.91
                 HHHHHH.T-SSHHHHHH CS
        HEAT   4 lllkll.sDpspeVRea 19 
                 ++++ll +D +  VR+a
  KOO22753.1 417 AIMRLLhQDAELCVRRA 433
                 68899999999999987 PP

  == domain 5  score: 1.3 bits;  conditional E-value: 0.063
                 HHHHHHHHH.T-SSHHHHHHHHHHH CS
        HEAT   1 llPlllkll.sDpspeVReaAakaL 24 
                 +lP+l   l +  ++ VR  Aa+ +
  KOO22753.1 556 VLPVLFGRLtTEAAAPVRLQAARVI 580
                 5899999996667777******976 PP

  == domain 6  score: 8.7 bits;  conditional E-value: 0.00026
                 HHHHHHT-SSHHHHHHHHHH CS
        HEAT   4 lllkllsDpspeVReaAaka 23 
                 +ll+l sDp p+VR  +a++
  KOO22753.1 645 ALLNLASDPVPNVRLRVARC 664
                 589999***********998 PP

  == domain 7  score: -2.1 bits;  conditional E-value: 0.76
                 HHHHT-SSHHHHHHH CS
        HEAT   6 lkllsDpspeVReaA 20 
                 ++l sD++ +VR  A
  KOO22753.1 681 IELQSDSARDVRLGA 695
                 6766999999**877 PP

>> Vac14_Fab1_bd  Vacuolar 14 Fab1-binding region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.4   0.0   8.6e-05      0.78      25      65 ..     218     258 ..     203     282 .. 0.76
   2 ?    3.4   0.0     0.013   1.2e+02      65      96 ..     672     703 ..     659     704 .. 0.84

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 8.6e-05
  Vac14_Fab1_bd  25 leeivkpvlkcfsDkdsrvRyyacEslyniakvakgevlkl 65 
                     +++++  l++++D++ rvR   cE l  ia ++  ev++ 
     KOO22753.1 218 QQRFLSHALSMCQDTELRVRCSMCEQLQCIAAALPPEVVSS 258
                    56789999**********************99998888764 PP

  == domain 2  score: 3.4 bits;  conditional E-value: 0.013
  Vac14_Fab1_bd  65 llneifdalvklvaDsdesvksgaelldrllk 96 
                     l+++++a+++l +Ds ++v+ ga+ +  ll+
     KOO22753.1 672 ALQRLHHAVIELQSDSARDVRLGASKVTGLLR 703
                    6889999*****************98877765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (782 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       476  (0.0265492); expected 358.6 (0.02)
Passed bias filter:                      341  (0.0190195); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.58u 0.25s 00:00:00.83 Elapsed: 00:00:00.40
# Mc/sec: 5869.23
//
Query:       KOO22754.1  [L=544]
Description: hypothetical protein Ctob_000623 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.1e-08   34.9   0.0      5e-08   32.8   0.0    1.8  1  HECT      HECT-domain (ubiquitin-transferase)


Domain annotation for each model (and alignments):
>> HECT  HECT-domain (ubiquitin-transferase)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.8   0.0   2.8e-12     5e-08      64     302 ..     261     539 ..     250     543 .. 0.75

  Alignments for each domain:
  == domain 1  score: 32.8 bits;  conditional E-value: 2.8e-12
                 HHHHHHTT.-.---TCH................HHHH-HHHHHHHHHHH..HS-GGG...GT-BSEEEEE.T..TEEEEEESSTTGGGSB--TTTHHHH CS
                 xxxxxxxx.xxxxxxxx................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.x..xxxxxxxxxxxxxxxxxxxxxxxxx RF
        HECT  64 aflkfllg.eekitled................leeidpelakslkellslesnteevedlaLtFtipen.a..gasatieLipnGanipVtnenkkeY 142
                 + + fl++ +++ +++d                l+++d++ ++ + +l+      +e +++ L+F +    +  ++   +    +G++++V  +  +  
  KOO22754.1 261 FAYDFLMNeHRPFHVHDadapgalssadaaraaLADFDSNAQSFFLSLR------PEPQQMPLDFLVHVGlLppEQ-LGVTRTLGGDTMEVARARADAL 352
                 5566666653344444444444444444555558899999999998888......334567899988854332212.2333445799999999999999 PP

                 HHHHHHHHHTGGGHHHHHHHHHHHHTTS-..................HHHHTTS-HHHHHHHHBCSS........S.--HHHHHHTEEEETT--TTSHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxx..................xxxxxxxxxxxxxxxxxxxx........xxxxxxxxxxxxxxxxxxxxxxxx RF
        HECT 143 iklyvnyllkksvekqleaflkGfsevip..................skalklfdaeelellisGed........elidvedlrrnteykggynaeset 215
                 + ++++y+l ++ +  le+f++Gf   +                   +++l+lf++ el+l++ G++        e+id+ + ++ +e   g ++    
  KOO22754.1 353 AIECARYALLERRKLALEHFRRGFLGAMGaagsasmpqddepgcldvTRHLALFTPVELSLMLGGKEtlsateliEMIDWPNAKEALET-WGTDKPAVL 450
                 99**********************99998899999999999999999********************9999855445555555555553.345555556 PP

                 HHHHHHHHHHS-HHHHHHHHHHHHSSSS--TTCGGG-B--EEEEE-S........-TTS--EEEGGGTEEEE---SSHHHHHHHHHHHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx......xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        HECT 216 iewlweilkefspeekrlfLqFvTgssrlPlgGfaelhpkftierksk......edetrLPtahTCfnlLklpdYsskeilkekLltAieete 302
                 ++  +  l ++s ++  ++ + +T+ + +P+     +++++t     +       d  +   + TCf +Lklp+Y+s e+l+  L+  + + e
  KOO22754.1 451 LRTYLVGLGDLSSNRCLDLFKCITARRAVPAH----MQERITLAAARSpkddsvYDGRAAAEVYTCFAQLKLPKYESLEQLEHGLNELLAQKE 539
                 6677777888**********************....55677777766655677656667789********************99986665555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (544 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       870  (0.0485247); expected 358.6 (0.02)
Passed bias filter:                      425  (0.0237046); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.52u 0.24s 00:00:00.76 Elapsed: 00:00:00.37
# Mc/sec: 4396.26
//
Query:       KOO22755.1  [L=535]
Description: kelch motif family [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      6e-17   61.5  13.8    9.2e-06   25.8   0.1    5.6  5  Kelch_3   Galactose oxidase, central domain
    9.2e-17   60.8   5.3    6.9e-06   26.0   0.0    5.1  5  Kelch_4   Galactose oxidase, central domain
    2.5e-15   56.1   9.0    0.00023   21.1   0.0    5.1  5  Kelch_5   Kelch motif
    9.1e-15   55.0   0.0    1.6e-14   54.2   0.0    1.4  1  CUB       CUB domain
    2.7e-13   49.7   8.9    0.00013   22.2   0.0    5.8  6  Kelch_6   Kelch motif
    1.7e-11   43.5   3.9    0.00029   20.4   0.0    5.0  5  Kelch_1   Kelch motif
    9.8e-09   34.9   8.5      0.043   13.8   0.0    5.4  5  Kelch_2   Kelch motif


Domain annotation for each model (and alignments):
>> Kelch_3  Galactose oxidase, central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.6   0.3   0.00021      0.54       7      48 ..       2      52 ..       1      53 [. 0.69
   2 !   25.8   0.1   3.6e-09   9.2e-06       1      47 [.      54     102 ..      54     103 .. 0.93
   3 !    6.9   0.2    0.0032       8.1       1      22 [.     105     126 ..     105     133 .. 0.80
   4 !   13.8   0.2   2.1e-05     0.053       2      41 ..     135     175 ..     134     178 .. 0.85
   5 !   10.3   0.0   0.00027      0.68       1      23 [.     184     205 ..     184     209 .. 0.89

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00021
     Kelch_3  7 fGGlgddgqdrl...ndvyvydl..dtntWaei......aslppaRaghaata 48
                fGG    ++ +l    ++++y    ++ +Wa         + p++R+g a++a
  KOO22755.1  2 FGGIS--STLPLsysDELWSYRRtdNSSSWALMppgssaIDRPTPRVGSALCA 52
                66666..6555556699****5544666***66454333445**********8 PP

  == domain 2  score: 25.8 bits;  conditional E-value: 3.6e-09
     Kelch_3   1 gdrlyifGGlgddgqdrlndvyvydldtntWa.ei..aslppaRaghaat 47 
                 g+++y++GG+     +++ d+y++d++  +W  ++  ++ p+a a+ha++
  KOO22755.1  54 GHFIYVYGGAS-FAANAHADLYRFDTAQRQWLlQLppGTAPGALAYHAMS 102
                 789********.6*******************97767999********97 PP

  == domain 3  score: 6.9 bits;  conditional E-value: 0.0032
     Kelch_3   1 gdrlyifGGlgddgqdrlndvy 22 
                 g+++y++GG++++g+ r++++ 
  KOO22755.1 105 GGTVYLSGGEDASGTLRSSTYA 126
                 689********98888887764 PP

  == domain 4  score: 13.8 bits;  conditional E-value: 2.1e-05
     Kelch_3   2 drlyifGGlgddgqdrl.ndvyvydldtntWa.ei..aslppaR 41 
                 +rly+fGG++     ++ ndv ++dl++  W      ++lp++R
  KOO22755.1 135 ERLYVFGGAD---ALGSrNDVVSLDLSSLIWSyPAaaGTLPTPR 175
                 68********...67777**************622569999999 PP

  == domain 5  score: 10.3 bits;  conditional E-value: 0.00027
     Kelch_3   1 gdrlyifGGlgddgqdrlndvyv 23 
                 +++ly++GGl  ++ + l+d+++
  KOO22755.1 184 NEKLYVYGGLS-TSSQLLGDMWS 205
                 579********.89*******96 PP

>> Kelch_4  Galactose oxidase, central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.0       1.2     3e+03      17      38 ..       1      24 [.       1      35 [. 0.71
   2 !   26.0   0.0   2.7e-09   6.9e-06       1      41 [.      44      83 ..      44      93 .. 0.93
   3 !   10.5   0.2   0.00019      0.47       3      34 ..      97     127 ..      97     134 .. 0.88
   4 !   12.8   0.0   3.4e-05     0.088      12      42 ..     134     163 ..     130     173 .. 0.88
   5 !    9.9   0.0   0.00028      0.71      13      32 ..     185     204 ..     174     205 .. 0.87

  Alignments for each domain:
  == domain 1  score: -1.7 bits;  conditional E-value: 1.2
     Kelch_4 17 lfGGrgedg...tllndlylldlst 38
                +fGG+++ +   + +++l+ +  ++
  KOO22755.1  1 MFGGISS-TlplSYSDELWSYRRTD 24
                6999988.55777788888775555 PP

  == domain 2  score: 26.0 bits;  conditional E-value: 2.7e-09
     Kelch_4  1 pRaghsatsipdgtiylfGGrgedgtllndlylldlstntW 41
                pR+g ++++++   iy++GG++  + +++dly++d+++++W
  KOO22755.1 44 PRVGSALCAVG-HFIYVYGGASFAANAHADLYRFDTAQRQW 83
                8*********6.***************************** PP

  == domain 3  score: 10.5 bits;  conditional E-value: 0.00019
     Kelch_4   3 aghsatsipdgtiylfGGrgedgtllndlyll 34 
                 a+h++  ++ gt+yl GG+ + gtl + +y+l
  KOO22755.1  97 AYHAMSCVG-GTVYLSGGEDASGTLRSSTYAL 127
                 69******6.*************998888875 PP

  == domain 4  score: 12.8 bits;  conditional E-value: 3.4e-05
     Kelch_4  12 dgtiylfGGrgedgtllndlylldlstntWr 42 
                   ++y+fGG+ + g + nd+  ldls+  W+
  KOO22755.1 134 AERLYVFGGADALG-SRNDVVSLDLSSLIWS 163
                 5689*********6.***************5 PP

  == domain 5  score: 9.9 bits;  conditional E-value: 0.00028
     Kelch_4  13 gtiylfGGrgedgtllndly 32 
                  ++y++GG ++  +ll+d++
  KOO22755.1 185 EKLYVYGGLSTSSQLLGDMW 204
                 589****************9 PP

>> Kelch_5  Kelch motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.0      0.77     2e+03      19      35 ..       1      18 [.       1      21 [. 0.72
   2 !   19.3   0.1   3.3e-07   0.00085       2      39 ..      42      78 ..      42      80 .. 0.83
   3 !    9.0   0.4   0.00053       1.4       2      25 ..      93     116 ..      92     128 .. 0.87
   4 !    8.2   0.0   0.00097       2.5      15      33 ..     135     156 ..     119     157 .. 0.76
   5 !   21.1   0.0     9e-08   0.00023       1      35 [.     171     204 ..     171     207 .. 0.95

  Alignments for each domain:
  == domain 1  score: -1.1 bits;  conditional E-value: 0.77
     Kelch_5 19 vyGGkvg.rdgsvsddvy 35
                ++GG+++    s+sd+++
  KOO22755.1  1 MFGGISStLPLSYSDELW 18
                699999755566778877 PP

  == domain 2  score: 19.3 bits;  conditional E-value: 3.3e-07
     Kelch_5  2 PppRaghcavtvsekiYvyGGkvgrdgsvsddvyvLdl 39
                P+pR g++ ++v++ iYvyGG +    ++  d+y++d+
  KOO22755.1 42 PTPRVGSALCAVGHFIYVYGGASF-AANAHADLYRFDT 78
                99********************95.4444478888776 PP

  == domain 3  score: 9.0 bits;  conditional E-value: 0.00053
     Kelch_5   2 PppRaghcavtvsekiYvyGGkvg 25 
                 P ++a+h++  v++ +Y+ GG ++
  KOO22755.1  93 PGALAYHAMSCVGGTVYLSGGEDA 116
                 99*******************885 PP

  == domain 4  score: 8.2 bits;  conditional E-value: 0.00097
     Kelch_5  15 ekiYvyGGkvg...rdgsvsdd 33 
                 e +Yv+GG ++   r++ vs d
  KOO22755.1 135 ERLYVFGGADAlgsRNDVVSLD 156
                 78********888899998887 PP

  == domain 5  score: 21.1 bits;  conditional E-value: 9e-08
     Kelch_5   1 iPppRaghcavtvsekiYvyGGkvgrdgsvsddvy 35 
                 +P+pR+g   ++++ek+YvyGG ++ ++++ +d++
  KOO22755.1 171 LPTPRWGTLGAKLNEKLYVYGGLST-SSQLLGDMW 204
                 6***********************6.999999999 PP

>> CUB  CUB domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.2   0.0   6.2e-18   1.6e-14       1     110 []     210     316 ..     210     316 .. 0.86

  Alignments for each domain:
  == domain 1  score: 54.2 bits;  conditional E-value: 6.2e-18
                 SCEE..E-SSEEEEESTTTTS---SS-EEEEEEE.--TTEEEEEEEESEEB--BSTSSSSEEEEEETTESSSSEEEEE-SSSS-SEEE-SSSEEEEEEE CS
         CUB   1 Cgge..ltessgsisspnypkeYeenkeCvweir.aekgssvklkfedfeleeeeecayDyveirdgeeasskllgkfcGsekpediksssnqllikfv 96 
                 C g+  l++s  +++s  +   Y +n++C+w i  + ++++v l f+ f le       Dyv ++dg eas +ll+ f+G++ p+ + ss+ +ll+  +
  KOO22755.1 210 CHGRvhLRASRATFAS--GEGVYGPNARCEWLIApTAPDRQVRLFFSAFGLE----DGADYVRVYDGTEASRPLLAAFTGQGLPQSLVSSNGSLLVVMT 302
                 6666334444444444..5557***********83567888***********....678**************************************** PP

                 --SS--SSEEEEEE CS
         CUB  97 sdesvskkGFkity 110
                 +d s++  GF+++y
  KOO22755.1 303 TDGSTQDVGFRASY 316
                 ************99 PP

>> Kelch_6  Kelch motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.2   0.1       0.4     1e+03      17      39 ..       2      26 ..       1      34 [. 0.77
   2 !   22.2   0.0   4.9e-08   0.00013       1      41 [.      44      84 ..      44      93 .. 0.91
   3 !    8.9   0.3   0.00074       1.9       3      25 ..      97     120 ..      95     133 .. 0.80
   4 !   10.7   0.0    0.0002      0.51      11      50 .]     134     175 ..     128     175 .. 0.83
   5 !    8.1   0.1    0.0014       3.5       8      31 ..     181     204 ..     174     207 .. 0.81
   6 ?   -1.4   0.0       1.3   3.4e+03       4      17 ..     287     300 ..     285     315 .. 0.80

  Alignments for each domain:
  == domain 1  score: 0.2 bits;  conditional E-value: 0.4
     Kelch_6 17 fGGytds..spylnkvwvydpetks 39
                fGG +     +y++ +w y+  ++s
  KOO22755.1  2 FGGISSTlpLSYSDELWSYRRTDNS 26
                8999888999*********965554 PP

  == domain 2  score: 22.2 bits;  conditional E-value: 4.9e-08
     Kelch_6  1 praghslvsvggkiYifGGytdsspylnkvwvydpetksWe 41
                pr+g +l++vg +iY++GG++ + +++ +++++d   + W 
  KOO22755.1 44 PRVGSALCAVGHFIYVYGGASFAANAHADLYRFDTAQRQWL 84
                6889999*************999***************996 PP

  == domain 3  score: 8.9 bits;  conditional E-value: 0.00074
     Kelch_6   3 aghslvsvggkiYifGGytds.sp 25 
                 a+h++ +vgg++Y+ GG ++s + 
  KOO22755.1  97 AYHAMSCVGGTVYLSGGEDASgTL 120
                 59****************998633 PP

  == domain 4  score: 10.7 bits;  conditional E-value: 0.0002
     Kelch_6  11 ggkiYifGGytdsspylnkvwvydpetksWeq...lpplpvpr 50 
                  +++Y+fGG+++   + n+v  +d+++  W+     + lp+pr
  KOO22755.1 134 AERLYVFGGADA-LGSRNDVVSLDLSSLIWSYpaaAGTLPTPR 175
                 589********9.778899********9999766555777776 PP

  == domain 5  score: 8.1 bits;  conditional E-value: 0.0014
     Kelch_6   8 vsvggkiYifGGytdsspylnkvw 31 
                 +  ++k+Y++GG++ ss+ l ++w
  KOO22755.1 181 AKLNEKLYVYGGLSTSSQLLGDMW 204
                 66799********99988888777 PP

  == domain 6  score: -1.4 bits;  conditional E-value: 1.3
     Kelch_6   4 ghslvsvggkiYif 17 
                 + slvs +g++ ++
  KOO22755.1 287 PQSLVSSNGSLLVV 300
                 7899**99987764 PP

>> Kelch_1  Kelch motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.1       1.1   2.8e+03      17      44 ..       2      34 ..       2      35 .. 0.66
   2 !   20.4   0.0   1.1e-07   0.00029       1      39 [.      44      83 ..      44      85 .. 0.98
   3 !    8.4   0.2    0.0006       1.5       2      23 ..      96     118 ..      95     127 .. 0.81
   4 !    5.7   0.0    0.0044        11      13      41 ..     136     164 ..     133     166 .. 0.90
   5 !    6.0   0.0    0.0034       8.7      10      33 ..     183     207 ..     181     211 .. 0.82

  Alignments for each domain:
  == domain 1  score: -2.0 bits;  conditional E-value: 1.1
                EEEBCS...SSBEEEEEEEETT..TTEEEEECC CS
     Kelch_1 17 iGGsdg...gnalssvevyDpe..tntWrelps 44
                +GG ++    ++++ ++ y  +  + +W  +p+
  KOO22755.1  2 FGGISStlpLSYSDELWSYRRTdnSSSWALMPP 34
                688888777667777777766666667766665 PP

  == domain 2  score: 20.4 bits;  conditional E-value: 1.1e-07
                BBBSEEEEEETTEEEEEEEBCS.SSBEEEEEEEETTTTEE CS
     Kelch_1  1 aragagavvvggkiYviGGsdg.gnalssvevyDpetntW 39
                +r g + ++vg+ iYv GG ++  na  +++++D+ + +W
  KOO22755.1 44 PRVGSALCAVGHFIYVYGGASFaANAHADLYRFDTAQRQW 83
                799************************************* PP

  == domain 3  score: 8.4 bits;  conditional E-value: 0.0006
                 BBSEEEEEETTEEEEEEEBCS.S CS
     Kelch_1   2 ragagavvvggkiYviGGsdg.g 23 
                  a++++ +vgg +Y  GG d  g
  KOO22755.1  96 LAYHAMSCVGGTVYLSGGEDAsG 118
                 689***************99843 PP

  == domain 4  score: 5.7 bits;  conditional E-value: 0.0044
                 EEEEEEEBCSSSBEEEEEEEETTTTEEEE CS
     Kelch_1  13 kiYviGGsdggnalssvevyDpetntWre 41 
                 ++Yv+GG d   + ++v  +D+ +  W++
  KOO22755.1 136 RLYVFGGADALGSRNDVVSLDLSSLIWSY 164
                 89********9999999999999999986 PP

  == domain 5  score: 6.0 bits;  conditional E-value: 0.0034
                 ETTEEEEEEEBCS.SSBEEEEEEEE CS
     Kelch_1  10 vggkiYviGGsdg.gnalssvevyD 33 
                 +++k+Yv GG +  ++ l + + ++
  KOO22755.1 183 LNEKLYVYGGLSTsSQLLGDMWSMS 207
                 689*******999888888888775 PP

>> Kelch_2  Kelch motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.1      0.72   1.9e+03      16      36 ..       1      21 [.       1      35 [. 0.64
   2 !   13.8   0.0   1.7e-05     0.043       1      42 [.      44      83 ..      44      84 .. 0.90
   3 !    8.3   0.3   0.00093       2.4       2      29 ..      96     123 ..      95     131 .. 0.81
   4 !    7.5   0.0    0.0016       4.1      10      39 ..     133     159 ..     130     169 .. 0.81
   5 !    6.0   0.1    0.0048        12      10      20 ..     183     193 ..     162     207 .. 0.73

  Alignments for each domain:
  == domain 1  score: -0.9 bits;  conditional E-value: 0.72
     Kelch_2 16 vvGGahtdnpnlsssdvhvld 36
                ++GG+ + +p+++s+ ++ ++
  KOO22755.1  1 MFGGISSTLPLSYSDELWSYR 21
                688888888888888887766 PP

  == domain 2  score: 13.8 bits;  conditional E-value: 1.7e-05
     Kelch_2  1 rrgghsssvpggkiyvvGGahtdnpnlsssdvhvldlekhvW 42
                +r+g++ + +g+ iyv+GGa  +    ++ d++ +d+  ++W
  KOO22755.1 44 PRVGSALCAVGHFIYVYGGA--SFAANAHADLYRFDTAQRQW 83
                79******************..77788888899988888888 PP

  == domain 3  score: 8.3 bits;  conditional E-value: 0.00093
     Kelch_2   2 rgghsssvpggkiyvvGGahtdnpnlss 29 
                 ++ h++s++gg +y+ GG +++++++ss
  KOO22755.1  96 LAYHAMSCVGGTVYLSGGEDASGTLRSS 123
                 688***************9666666655 PP

  == domain 4  score: 7.5 bits;  conditional E-value: 0.0016
     Kelch_2  10 pggkiyvvGGahtdnpnlsssdvhvldlek 39 
                 p  ++yv+GGa   + + s +dv  ldl++
  KOO22755.1 133 PAERLYVFGGA---DALGSRNDVVSLDLSS 159
                 6789*******...9999999998888776 PP

  == domain 5  score: 6.0 bits;  conditional E-value: 0.0048
     Kelch_2  10 pggkiyvvGGa 20 
                 ++ k+yv+GG 
  KOO22755.1 183 LNEKLYVYGGL 193
                 599*******9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (535 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       600  (0.0334653); expected 358.6 (0.02)
Passed bias filter:                      416  (0.0232026); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.56u 0.26s 00:00:00.82 Elapsed: 00:00:00.42
# Mc/sec: 3789.52
//
Query:       KOO22756.1  [L=98]
Description: dolichol-phosphate mannosyltransferase subunit 3 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      2e-20   72.7   0.0    2.1e-20   72.7   0.0    1.0  1  DPM3      Dolichol-phosphate mannosyltransferase subunit 3 (D


Domain annotation for each model (and alignments):
>> DPM3  Dolichol-phosphate mannosyltransferase subunit 3 (DPM3)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   72.7   0.0   1.2e-24   2.1e-20       9      90 ..       9      89 ..       1      90 [. 0.94

  Alignments for each domain:
  == domain 1  score: 72.7 bits;  conditional E-value: 1.2e-24
        DPM3  9 alallllalwlalllrlvslplskvqdevvpvlPlwalvlfGayslatlgygvltfndcpeaakeLqkeikeAkadLrkkGv 90
                 ++++ +a+wlal+l+l  +pls+  ++vv +lP +al+ fG++sl t+ ++++++++c +aa eL ++i  A++dLr++G+
  KOO22756.1  9 GVLTASAAVWLALYLELA-IPLSPSGQQVVSALPCLALIWFGCWSLGTISLNLIRLRECTDAAVELREQIAAARNDLRARGL 89
                57788999*********9.999**********************************************************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (98 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       427  (0.0238162); expected 358.6 (0.02)
Passed bias filter:                      327  (0.0182386); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.35u 0.29s 00:00:00.63 Elapsed: 00:00:00.42
# Mc/sec: 696.28
//
Query:       KOO22757.1  [L=290]
Description: unc93-like protein 1-like protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (290 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       349  (0.0194657); expected 358.6 (0.02)
Passed bias filter:                      239  (0.0133304); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.45u 0.26s 00:00:00.71 Elapsed: 00:00:00.44
# Mc/sec: 1993.18
//
Query:       KOO22758.1  [L=1202]
Description: hypothetical protein Ctob_000619 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.5e-06   28.3   0.0    3.6e-06   27.1   0.0    1.6  1  RRM_DME          RRM in Demeter
    7.8e-05   22.5  10.8    7.8e-05   22.5  10.8    2.6  2  PHD              PHD-finger
    0.00065   20.1   0.0     0.0017   18.8   0.0    1.6  1  HMG_box          HMG (high mobility group) box
  ------ inclusion threshold ------
      0.017   15.3   0.0      0.041   14.1   0.0    1.6  1  Acetyltransf_1   Acetyltransferase (GNAT) family
      0.029   15.0   0.0      0.066   13.8   0.0    1.6  1  HMG_box_2        HMG-box domain
       0.08   13.4   0.0        6.5    7.3   0.0    2.6  2  HhH-GPD          HhH-GPD superfamily base excision DNA repair
       0.12   12.8   0.0       0.29   11.6   0.0    1.6  1  Acetyltransf_7   Acetyltransferase (GNAT) domain
       0.13   12.2   0.0       0.27   11.2   0.0    1.4  1  Acetyltransf_10  Acetyltransferase (GNAT) domain
       0.14   12.2   0.0       0.34   10.9   0.0    1.6  1  FR47             FR47-like protein


Domain annotation for each model (and alignments):
>> RRM_DME  RRM in Demeter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.1   0.0   1.8e-09   3.6e-06       2      42 ..    1005    1045 ..    1004    1050 .. 0.85

  Alignments for each domain:
  == domain 1  score: 27.1 bits;  conditional E-value: 1.8e-09
     RRM_DME    2 tiliPcrtamrGsfPlnGtyfqvnevfadhesslnpievar 42  
                   +l+   ta +G fP++Gtyf  nevf d++++  p + a+
  KOO22758.1 1005 RLLLSPWTAFQGVFPMHGTYFAQNEVFEDESAGEPPASAAA 1045
                  5677778**********************999888876655 PP

>> PHD  PHD-finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.5  10.8   3.9e-08   7.8e-05       1      51 [.     325     386 ..     325     387 .. 0.82
   2 ?   -0.4   1.8      0.55   1.1e+03       2      20 ..     409     427 ..     408     430 .. 0.89

  Alignments for each domain:
  == domain 1  score: 22.5 bits;  conditional E-value: 3.9e-08
                 SBTTTTS........TTSTTSCEEEETTTSCEEETTTSSSTHSHHSHHSS...TBSSTTTHT CS
         PHD   1 rCavCkk........ksdeeeelvqCdgCkrwfHqkClkppleseekpeg...ewlCekCke 51 
                 +C +C++        ++  +ee++qC++C rw+H++C  +p+  +   +    +++C  C+ 
  KOO22758.1 325 YCPLCERlyaepeagAAAMPEEMLQCESCARWVHVSCEALPVHCTHTVDFddvHYTCAACRG 386
                 69999998876654444459*********************997777666889*******86 PP

  == domain 2  score: -0.4 bits;  conditional E-value: 0.55
                 BTTTTSTTSTTSCEEEETT CS
         PHD   2 CavCkkksdeeeelvqCdg 20 
                 C +C+ k +++ee v Cd+
  KOO22758.1 409 CPACETKCTTGEEAVGCDR 427
                 99****8999*******95 PP

>> HMG_box  HMG (high mobility group) box
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.8   0.0   8.3e-07    0.0017       4      52 ..     687     735 ..     685     738 .. 0.93

  Alignments for each domain:
  == domain 1  score: 18.8 bits;  conditional E-value: 8.3e-07
                 S--HHHHHHHHHHHHHHHHSTTS-HHHHHHHHHHHHHHSHHHHHHHHHH CS
     HMG_box   4 plsafflfskeqraklkaenPelknaeiskklgekWkalseeeKkkYee 52 
                 p +a  ++++++r+ l  e P+ + +e+ + l ++Wk++ ++e++++ +
  KOO22758.1 687 PKTAHDIYVEAMRPALSLERPKCSRSELRTLLLQQWKQMDAAERAPWLA 735
                 7888889***************************************966 PP

>> Acetyltransf_1  Acetyltransferase (GNAT) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   0.0     2e-05     0.041      56     105 ..      96     142 ..      44     154 .. 0.77

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 2e-05
                     TSTTEEEEEEEEESGGGTTSSHHHHHHHHHHHHHHHTTESEEEEEEETTE CS
  Acetyltransf_1  56 ekggvayieslaVspeyrgkGlGsaLlealeerareegikkivlaveedn 105
                       ++ +++  laV+++  +kGlG+ ++e++ e ar  g +++ + v  +n
      KOO22758.1  96 SQRNFTELLLLAVDRNEERKGLGRSMVEYVHECARAAGSERLIV-V--SN 142
                     4456799999*************************99**99644.2..33 PP

>> HMG_box_2  HMG-box domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.0   3.3e-05     0.066       2      54 ..     682     733 ..     681     737 .. 0.94

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 3.3e-05
                 --.-SS--HHHHHHHTTHHHHHHHT---SSHHHHTGGGHHHHHHS-HHHHHHH CS
   HMG_box_2   2 kkpkaarnAYalfvqemipelkrkGnpviglaevsklcsekWkalseeeKekY 54 
                  k k+++ A  ++v  m+p l  + +p    +e   l+ ++Wk++ ++e+ ++
  KOO22758.1 682 SKGKGPKTAHDIYVEAMRPALSLE-RPKCSRSELRTLLLQQWKQMDAAERAPW 733
                 6889********************.************************9875 PP

>> HhH-GPD  HhH-GPD superfamily base excision DNA repair protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.1   0.0     0.064   1.3e+02      48      66 ..     115     133 ..      82     212 .. 0.83
   2 ?    7.3   0.0    0.0033       6.5      66      91 ..     534     565 ..     423     573 .. 0.78

  Alignments for each domain:
  == domain 1  score: 3.1 bits;  conditional E-value: 0.064
                 STTHHHHHHHHHHHHHHHH CS
                 xxxxxxxxxxxxxxxxxxx RF
     HhH-GPD  48 lGfyrrKakyikelArilv 66 
                  G++r++++y++e+Ar+  
  KOO22758.1 115 KGLGRSMVEYVHECARAAG 133
                 599*************865 PP

  == domain 2  score: 7.3 bits;  conditional E-value: 0.0033
                 H........S-SSS--TTSHHHHHHHHHHTTSSS CS
                 x........xxxxxxxxxxxxxxxxxxxxxxxxx RF
     HhH-GPD  66 v........gkpdvlivvDvhvrrilkrlrsike 91 
                 +        g+ d  ++vD +v r++ rl+++k+
  KOO22758.1 534 IaclllyrmGRVD--FAVDANVLRVMTRLGWLKR 565
                 0455555555545..99**************998 PP

>> Acetyltransf_7  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   0.00014      0.29      24      52 ..      95     133 ..      63     151 .. 0.62

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 0.00014
                     S.....TCTEEEEE-GGGTTSSHHHHHHHH..TT...SE CS
  Acetyltransf_7  24 d.....aeitrlaVdpeyrgkGiGraLlea..ae...kg 52 
                     +     +e+  laVd +  +kG+Gr ++e+  ++    g
      KOO22758.1  95 AsqrnfTELLLLAVDRNEERKGLGRSMVEYvhECaraAG 133
                     04444455666******************7331132323 PP

>> Acetyltransf_10  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   0.00013      0.27      49      91 ..      98     139 ..      92     146 .. 0.82

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00013
  Acetyltransf_10  49 rdgshisllfVdpeyrgqGigkaLleaveeeaekdgikleltv 91 
                      r+  ++ ll+Vd++  ++G+g++++e+v e a+ +g++ +l v
       KOO22758.1  98 RNFTELLLLAVDRNEERKGLGRSMVEYVHECARAAGSE-RLIV 139
                      55668999********************9999888777.6655 PP

>> FR47  FR47-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   0.00017      0.34      18      62 ..      97     141 ..      92     146 .. 0.88

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00017
                 E-TTSSEEEEEE-GGG-SSSHHHHHHHHHHHHHHHS-S-EEEEEE CS
        FR47  18 rkdggelgalqvlpehrrrGlgsrlvkalakeiaergktvllvvv 62 
                 +++++el  l v+ + +r+Glg+++v+ + +  +++g + l+vv 
  KOO22758.1  97 QRNFTELLLLAVDRNEERKGLGRSMVEYVHECARAAGSERLIVVS 141
                 7889*************************9999999999888876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1202 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       677  (0.0377601); expected 358.6 (0.02)
Passed bias filter:                      348  (0.0194099); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.74u 0.30s 00:00:01.04 Elapsed: 00:00:00.47
# Mc/sec: 7616.38
//
Query:       KOO22759.1  [L=177]
Description: hypothetical protein Ctob_000618 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (177 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       524  (0.0292264); expected 358.6 (0.02)
Passed bias filter:                      323  (0.0180155); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.41u 0.25s 00:00:00.65 Elapsed: 00:00:00.42
# Mc/sec: 1270.89
//
Query:       KOO22760.1  [L=1315]
Description: glucan -beta-glucosidase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.4e-24   87.0   0.0    2.7e-24   86.2   0.0    1.4  1  Glyco_hydro_3   Glycosyl hydrolase family 3 N terminal domain


Domain annotation for each model (and alignments):
>> Glyco_hydro_3  Glycosyl hydrolase family 3 N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   86.2   0.0   1.5e-28   2.7e-24      86     318 ..     114     366 ..     106     367 .. 0.84

  Alignments for each domain:
  == domain 1  score: 86.2 bits;  conditional E-value: 1.5e-28
                    ---S-HHHHHHHT-HHHHHHHHHHHHHHHHH.........HT--EE---B-----STTSSSGGGSS-SSHHHHHHHHHHHHHHHHHT......... CS
  Glyco_hydro_3  86 tlfPsalalaatssldlikelgriiakelra.........lgididfaPvvdvnrdprngigvrsFsedpelvaalaaamvkGlqga......... 163
                    t+fP+ +++aa+++ +l+ e++ +ia e r          ++     + v++++rdpr+g+  ++++e p l+++la a+ kGl g          
     KOO22760.1 114 TVFPQGTGFAASFDTKLVFEAAVAIADESRSfqryvsnrtVEYRSGASSVINIARDPRWGRVPETYGECPTLTGKLAVAFNKGLMGFasatsrepp 209
                    9**************************9876111111111344456799*************************************9********* PP

                    ...T-EEEEEEETTGTT-SSETTTSEEB----HHHHHHTTHHHHHHHH.HTT-SEEEE---B-TTT---BGGG-HHHHIIIIIIIS---SEEEES- CS
  Glyco_hydro_3 164 ...gvaatvKHFpghGdgavdshkelptvdhseeelrevdlvpfqaai.eagvdsVMtaHvqfpaldgtpatgskklltdvLRkelGFdGvvvsDa 255
                       ++++++ HF+++ +g   +   ++    +e++l+  +l  ++ ++ e  +  VM a    +al+g+p  +++ llt+vLR+ + ++G+v+sD 
     KOO22760.1 210 svlKLLPVMRHFAAY-AGPERTRFSFNAR-VNEKDLELTYLPAWRRLVrEGALVGVMSA---ISALNGVPGIAHRTLLTHVLRDTWLYEGFVLSDC 300
                    *9999**********.6666666666655.59****************6655667****...*********************************8 PP

                    TTSHHHH.CCS-.......HHHHHHHHHHHT-SBEES-S---SGHHHHHHHHHTTSS-HHHHHHHHHHHHH CS
  Glyco_hydro_3 256 lamkeia.drgg.......keeavvlaLkAGvDilLvpeertseikalkkavkeGeltearidesvrrvlr 318
                         +  d +         e+a++ aL AG+Di   p        al++a + G ++++ i  ++rrvlr
     KOO22760.1 301 DTFPSLLpDTFPswdwagsAEQAAADALGAGNDINCGPGF-----GALLNATRLGFVNRSVIALAARRVLR 366
                    76655441333355566669999**********9755443.....68999999999999999999999998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1315 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       608  (0.0339115); expected 358.6 (0.02)
Passed bias filter:                      392  (0.021864); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.81u 0.31s 00:00:01.12 Elapsed: 00:00:00.46
# Mc/sec: 8614.52
//
Query:       KOO22761.1  [L=376]
Description: lipoprotein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
     0.0053   16.8   0.2      0.011   15.8   0.2    1.5  1  WW        WW domain


Domain annotation for each model (and alignments):
>> WW  WW domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.2     6e-07     0.011       4      31 .]      82     110 ..      80     110 .. 0.92

  Alignments for each domain:
  == domain 1  score: 15.8 bits;  conditional E-value: 6e-07
                 TEEEEE-TTT.T-EEEEETTT--EESS-- CS
          WW   4 GWeeqwdpds.GrvYYyNheTgetqWekP 31 
                 +W  +++p + G+ ++ + +T+et+W  P
  KOO22761.1  82 PWLVCRSPAHgGKLFWLHRTTQETTWRQP 110
                 7999**********************665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (376 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       390  (0.0217525); expected 358.6 (0.02)
Passed bias filter:                      292  (0.0162865); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.25s 00:00:00.68 Elapsed: 00:00:00.40
# Mc/sec: 2839.60
//
Query:       KOO22762.1  [L=850]
Description: hypothetical protein Ctob_000616 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (850 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       543  (0.0302861); expected 358.6 (0.02)
Passed bias filter:                      436  (0.0243181); expected 358.6 (0.02)
Passed Vit filter:                        57  (0.00317921); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.65u 0.27s 00:00:00.92 Elapsed: 00:00:00.40
# Mc/sec: 6370.27
//
Query:       KOO22763.1  [L=706]
Description: acetyl-CoA synthetase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.9e-85  287.0   0.0    2.3e-85  286.8   0.0    1.1  1  AMP-binding    AMP-binding enzyme
    1.8e-24   85.4   1.5    4.1e-24   84.3   1.5    1.7  1  ACAS_N         Acetyl-coenzyme A synthetase N-terminus
    1.5e-23   83.5   0.7    3.5e-23   82.4   0.7    1.7  1  AMP-binding_C  AMP-binding enzyme C-terminal domain
  ------ inclusion threshold ------
      0.052   14.2   0.1      0.094   13.4   0.1    1.4  1  RhoGAP-FF1     p190-A and -B Rho GAPs FF domain


Domain annotation for each model (and alignments):
>> AMP-binding  AMP-binding enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  286.8   0.0     5e-89   2.3e-85       6     422 ..     133     573 ..     127     574 .. 0.87

  Alignments for each domain:
  == domain 1  score: 286.8 bits;  conditional E-value: 5e-89
                  HHSTTSEEEEE.....CCSTEEEEHHHHHHHHHHHHHHHHHTTSSTT-EEEEEESSSHHHHHHHHHHHHTT-EEEEEETTS-HHHHHHHHHHHTESEE CS
  AMP-binding   6 aktpdkvalvd.....sgegqtlTYreldervnrlAagLrslGvkkgdrVaillpnspewvvallailkaGavvvplnptltaeelayiledseakvl 98 
                  a + +++a++      ++e  ++TY+++ ++v++++++L++ Gvk+gd+V i++p+ p++ +a+la++++Gav++++  +++ae+la  l d++++v+
   KOO22763.1 133 AGHGGQIAMYHesneeGEELPSWTYAQMLAEVEKMGSWLLAQGVKPGDKVSIFMPMVPQLPIAMLACARIGAVHSVVFGGFSAEALANRLVDAQSTVV 230
                  5566788885588777777789******************99******************************************************** PP

                  E............ETCTCCC.HHHHHHHHSCC-EECEEEEESCCS-HCCHCCCHCCCCSCTTS.......-TSCCCS-BTTSEEEEEEE--SSSS-EE CS
  AMP-binding  99 i............atvdsel.leklleaaakleavklvivldadellkeeelkeeeeseekae.......kpeeeeelkpddlayiiYTSGTTGkPKG 176
                  i            +     + ++++++  ++    ++v++l++ +++k + l+ e++ + +++         + +e+  ++d+++++YTSG+TGkPKG
   KOO22763.1 231 ItadgvmrgtkpvK---LFEtVAAAAALCSSSMPIAKVLILQRLGPDKLK-LELEKGRDVWWHealsaadPSCAVEWMGAEDPLFVLYTSGSTGKPKG 324
                  **999887654431...222222233333333345667777777777664.4444444444424667788788999********************** PP

                  EEEEH.HHHHHHHHHHHHHHC.SCCTTT-EEEESS-TTSCHHHHHHHHHHHHTT-EEEE-TTCGC.CHHHHHHHHHHHHT-SEEEEEHHHHHHHHHCC CS
  AMP-binding 177 Vmlsh.rnlvanvaslkletr.fklkeddvvlsilplahifglilelllallsGatvvllpkdaa.ldpklllelieklkvtviagvPrvleallesg 271
                  V++++ +++v+++++    ++ f+lk++d++++++++ +i+g+++ +++++l+ a+  ++++ +  +d+++l+++++k++vt i+++P++++ l++ g
   KOO22763.1 325 VVHTTgGYMVYAATTS---KYiFDLKPEDTFFCTADCGWITGHTYVTYGPMLNRAKQLVFEGVPSyPDAGRLWRAVDKYEVTQIYTAPTAIRSLMKVG 419
                  *****88889998885...3559999***************************************88899**************************76 PP

                  CHHCHHHHCCGTT-SEEEEESS-EBHHHHHHHHHHHTC...EEEEEEEEGGGSSECEE.CHCTTTCTSTTS-BEE-TTEEEEEE-TTTSCBEETTSEE CS
  AMP-binding 272 alkaakkakdlsslrlvllggeplspellrffralfge...evlegYGlTEttgvvtv.lpleedkkklgsvGkplpgvevkivDeetgepvpdgeeG 365
                  +    +++++ +sl+l+ ++gep++pe++r++++++g+   ++++++++TEt+g++++ lp+++  +k+g +  p+ gv+  ++  e g +++   eG
   KOO22763.1 420 DTP--VTSTSRKSLKLLGSVGEPINPEAWRWYHKVVGDgrcPIVDTWWQTETGGIMITpLPTKGFGEKPGCASLPFFGVQPVLLTSE-GVELEGAAEG 514
                  666..34557889************************9******************88888899999******************98.9***99999* PP

                  EEEEEET..TS-SEBTT-HHHHHHHEEET.CCEEEEEEEEEEETTSEEEEEEECCCEEEE CS
  AMP-binding 366 ellvrgp..gvmkgYlkkpeataeafdse.grwlrTGDlgrldedGyleivgRkkdlikl 422
                   l ++gp  +  +  l++ e+ + +++ + ++++ TGD +r+dedGy++i+gR +d+i++
   KOO22763.1 515 LLALKGPwpSAIRAVLGDYERFRNTYF-PiDGYYMTGDGARRDEDGYIWITGRVDDVINT 573
                  *******777*****************.7678**************************97 PP

>> ACAS_N  Acetyl-coenzyme A synthetase N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   84.3   1.5   9.1e-28   4.1e-24       1      55 []      67     126 ..      67     126 .. 0.91

  Alignments for each domain:
  == domain 1  score: 84.3 bits;  conditional E-value: 9.1e-28
                 HHHHHHHHHH-HHHHHHHHHCCS--SB--S-SECST....TTC.T-EESTT-EE-HHHHH CS
      ACAS_N   1 ykelykeSiedpeaFWaeqakeldWekpfdkvldgs....kgp.fikWFeGGklNicyNc 55 
                 yk++y++Si+dpe+FW+e+ak+++We pf+kv+d +    +g+ f +WFeGGk+NicyN+
  KOO22763.1  67 YKTMYERSIRDPEGFWGEIAKQFHWEVPFTKVVDFNfkstNGKiFSRWFEGGKTNICYNA 126
                 99******************************9877433356689**************7 PP

>> AMP-binding_C  AMP-binding enzyme C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   82.4   0.7   7.8e-27   3.5e-23       1      76 []     582     660 ..     582     660 .. 0.94

  Alignments for each domain:
  == domain 1  score: 82.4 bits;  conditional E-value: 7.8e-27
                    HHHHHHHSSTTEEEEEEE-----TTS---EEEEEE---..-.--HHHHHHHHHHHHT-TTTS-SEEEE-S---B-TTS- CS
  AMP-binding_C   1 evEsalvshpaVaeaaVvGvpdevkGealvafVvlkdg..s.ealeeeLkahvrkelgpyavpkkvvfvdelpktrsGK 76 
                    evEsa v hp+VaeaaVvG p+++kGe + ++V+ k+g  + e+l +eL+ ++rke+g++a+p+ v+  ++lpktrsGK
     KOO22763.1 582 EVESAMVLHPKVAEAAVVGYPHPIKGEGIYVYVTVKQGveQtEELLKELNLQCRKEIGAFATPDVVHWAPALPKTRSGK 660
                    8***********************************99643344**********************************9 PP

>> RhoGAP-FF1  p190-A and -B Rho GAPs FF domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.1   2.1e-05     0.094       1      65 [.      51     115 ..      51     121 .. 0.93

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 2.1e-05
  RhoGAP-FF1   1 eAakarkellesatdayekLirkqVtdyralWssvskklskekefeeyvelfGtekakklFrrhi 65 
                 eA+ a +++  +  d+y+++ +++++d +  W ++ k+++ e  f++ v+   ++   k+F+r+ 
  KOO22763.1  51 EAFLASRQTYIKDFDEYKTMYERSIRDPEGFWGEIAKQFHWEVPFTKVVDFNFKSTNGKIFSRWF 115
                 67778888899999***********************************************9975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (706 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       290  (0.0161749); expected 358.6 (0.02)
Passed bias filter:                      282  (0.0157287); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.55u 0.28s 00:00:00.83 Elapsed: 00:00:00.43
# Mc/sec: 4909.06
//
Query:       KOO22764.1  [L=87]
Description: hypothetical protein Ctob_006261 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (87 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       179  (0.00998383); expected 358.6 (0.02)
Passed bias filter:                      110  (0.00613531); expected 358.6 (0.02)
Passed Vit filter:                         7  (0.000390429); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.23s 00:00:00.56 Elapsed: 00:00:00.38
# Mc/sec: 688.30
//
Query:       KOO22765.1  [L=352]
Description: nitroreductase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    9.8e-17   61.5   0.0    1.3e-16   61.1   0.0    1.2  1  Nitroreductase  Nitroreductase family
  ------ inclusion threshold ------
       0.24   11.3   0.0       0.35   10.8   0.0    1.2  1  Armet           Degradation arginine-rich protein for mis-fol


Domain annotation for each model (and alignments):
>> Nitroreductase  Nitroreductase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.1   0.0   1.5e-20   1.3e-16       1     169 [.     154     329 ..     154     330 .. 0.80

  Alignments for each domain:
  == domain 1  score: 61.1 bits;  conditional E-value: 1.5e-20
                     HHH--B-..--B-S----HHHHHHHHHHHHTS--GGG---EEEEEE.-CCCHHHHHHHHHHHHHHHHTT-SS-GGGGGGHHHHHHHHHHHHSSEE CS
  Nitroreductase   1 irkRrSi..RkFddepvpkeelekileaarraPsagnlqpwrfvvvqdkelryklaeaalelllkaeaqaelaqryrkeelklkaqkalagapvl 93 
                     +r+RrS+  + ++  pvp+ ++e+ leaa +aP++g ++pwrfvv+  ++++++l  + +e++++  a++      + +++++k+++ l++  ++
      KOO22765.1 154 LRRRRSVfpKDYTGAPVPRPVIERALEAANWAPTHGKTEPWRFVVF-AGAALDALHTIKREATQRQLASKPVELAAALTKMDAKRAE-LEKVSAI 246
                     589*****99************************************.8999988888888888888887777777665555555555.5555555 PP

                     EEE---TTS---HHHHHHHHHHHHHHHHHHHHHHHHHHHTT-EEEEE-GGG...GGHHHHHHHHT-S.......SEEEEEEEEE CS
  Nitroreductase  94 ivivatldkserkaaerayryalldagaaaqnllLaAtalGlgscpiggfd...eaaeevrkllglp.....deeeivvliavG 169
                     + i  ++     k     ++++   +++a+qnl L +ta G+   + +g     ++++evr+l g +       +++++ ++vG
      KOO22765.1 247 VAI-VRKRVPNAKGLLMPEWEETCAVACAVQNLHLQLTADGYVGYWSSGGVdgwADDPEVRRLVGADgavdgARDKVLGWFHVG 329
                     555.2666666666666777778888999******************999989988889******9966544336666666666 PP

>> Armet  Degradation arginine-rich protein for mis-folding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0     4e-05      0.35      40     126 ..     191     274 ..     173     285 .. 0.83

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 4e-05
       Armet  40 gkenrlCyylgaledaatkilsevskplsvsvPvekiCeklkkkdsqicelkyekkidlksvdlkklkvkeLkkile.dWgeeCk.gCi 126
                  +  r+  + ga  da  +i +e ++   +s Pve +   l+k+d++  el        + v + + +v + k +l+ +W+e+C  +C+
  KOO22765.1 191 TEPWRFVVFAGAALDALHTIKREATQRQLASKPVE-LAAALTKMDAKRAELEKVS----AIVAIVRKRVPNAKGLLMpEWEETCAvACA 274
                 44569999**************************9.999*********9985333....45889999******987549*****73565 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (352 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       598  (0.0333538); expected 358.6 (0.02)
Passed bias filter:                      416  (0.0232026); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.50u 0.26s 00:00:00.76 Elapsed: 00:00:00.45
# Mc/sec: 2355.59
//
Query:       KOO22766.1  [L=203]
Description: outer dynein arm-docking complex subunit 3 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.5e-16   59.4   6.6    1.2e-07   32.1   0.1    2.4  2  EF-hand_7  EF-hand domain pair
    5.6e-14   51.7   6.8      8e-12   44.8   0.0    3.2  3  EF-hand_8  EF-hand domain pair
    9.6e-12   43.8   4.8    0.00029   20.5   0.4    4.4  4  EF-hand_6  EF-hand domain
      6e-10   38.0  11.0     0.0061   16.0   0.2    4.3  4  EF-hand_1  EF hand
     0.0016   17.8   3.8       0.24   11.0   0.1    4.0  4  EF-hand_5  EF hand


Domain annotation for each model (and alignments):
>> EF-hand_7  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.1   0.1   3.2e-11   1.2e-07       2      70 ..      20      83 ..      19      84 .. 0.88
   2 !   28.6   2.9   3.9e-10   1.4e-06       8      67 ..     104     157 ..      99     159 .. 0.82

  Alignments for each domain:
  == domain 1  score: 32.1 bits;  conditional E-value: 3.2e-11
   EF-hand_7  2 eklkeaFkelDtdgdgyldkeellrllrkifqgagegsklsdeelellfkefDtdkdGvisfdEFlkly 70
                e l+++F+ l +   g+++ke+l + lr ++    ++ ++s   +e+l+ e+D d+d  is++EF++++
  KOO22766.1 20 ENLQRVFNILVKKECGKITKEQLYKTLRTLS---YPKLSMS--VVEDLIWEVDEDCDSMISWEEFKAMF 83
                6799******************999***965...5555555..599********************987 PP

  == domain 2  score: 28.6 bits;  conditional E-value: 3.9e-10
   EF-hand_7   8 FkelDtdgdgyldkee.llrllrkifqgagegsklsdeelellfkefDtdkdGvisfdEFl 67 
                 F ++D+d++g++d++e ++ l+r++      g++  +  + +++   D ++d +isf+EFl
  KOO22766.1 104 FMMHDKDQSGSIDMDEcMEILFRRF------GKDQLEARVNDFMTH-DINSDKEISFSEFL 157
                 99**************777799965......444445558888877.*************8 PP

>> EF-hand_8  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.8   0.0   2.2e-15     8e-12       3      54 ..      35      85 ..      33      85 .. 0.96
   2 !    5.2   0.6    0.0054        19      32      55 .]     104     127 ..     102     130 .. 0.86
   3 ?    4.0   0.2     0.012        44      32      51 ..     140     159 ..     140     163 .. 0.87

  Alignments for each domain:
  == domain 1  score: 44.8 bits;  conditional E-value: 2.2e-15
   EF-hand_8  3 gkItreelrrilrilglkkglseeevdilfrefDtdgdGkisfeEFcvller 54
                gkIt+e l+++lr+l ++k ls + v++l++e+D+d+d +is+eEF +++ r
  KOO22766.1 35 GKITKEQLYKTLRTLSYPK-LSMSVVEDLIWEVDEDCDSMISWEEFKAMFYR 85
                8*****************6.*****************************975 PP

  == domain 2  score: 5.2 bits;  conditional E-value: 0.0054
   EF-hand_8  32 frefDtdgdGkisfeEFcvllerr 55 
                 f+ +D d++G i+ +E ++ l+rr
  KOO22766.1 104 FMMHDKDQSGSIDMDECMEILFRR 127
                 777899*********999888875 PP

  == domain 3  score: 4.0 bits;  conditional E-value: 0.012
   EF-hand_8  32 frefDtdgdGkisfeEFcvl 51 
                 f+++D++ d  isf EF+v+
  KOO22766.1 140 FMTHDINSDKEISFSEFLVM 159
                 77899999999*******98 PP

>> EF-hand_6  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.1   0.0   0.00079       2.8       2      28 ..      22      48 ..      21      56 .. 0.86
   2 !    6.8   0.0     0.002       7.1      10      26 ..      67      83 ..      65      92 .. 0.89
   3 !   20.5   0.4   8.2e-08   0.00029       6      27 ..     104     125 ..     103     131 .. 0.92
   4 !    7.1   0.2    0.0017         6       6      23 ..     140     157 ..     138     159 .. 0.93

  Alignments for each domain:
  == domain 1  score: 8.1 bits;  conditional E-value: 0.00079
   EF-hand_6  2 lreaFklfDkdgdGkidaeElrkalrk 28
                l+++F+++ k   Gki++e+l k lr+
  KOO22766.1 22 LQRVFNILVKKECGKITKEQLYKTLRT 48
                6788999999999************95 PP

  == domain 2  score: 6.8 bits;  conditional E-value: 0.002
   EF-hand_6 10 DkdgdGkidaeElrkal 26
                D d d  i++eE+++++
  KOO22766.1 67 DEDCDSMISWEEFKAMF 83
                99************986 PP

  == domain 3  score: 20.5 bits;  conditional E-value: 8.2e-08
   EF-hand_6   6 FklfDkdgdGkidaeElrkalr 27 
                 F+++Dkd +G+id++E++ +l 
  KOO22766.1 104 FMMHDKDQSGSIDMDECMEILF 125
                 9*****************9986 PP

  == domain 4  score: 7.1 bits;  conditional E-value: 0.0017
   EF-hand_6   6 FklfDkdgdGkidaeElr 23 
                 F+ +D + d +i+++E+ 
  KOO22766.1 140 FMTHDINSDKEISFSEFL 157
                 999*************96 PP

>> EF-hand_1  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.7   0.0      0.14   4.9e+02      15      28 ..      35      48 ..      35      49 .. 0.85
   2 !   16.0   0.2   1.7e-06    0.0061       2      28 ..      59      85 ..      58      86 .. 0.90
   3 !   15.3   0.5     3e-06     0.011       6      26 ..     104     124 ..     103     127 .. 0.92
   4 !   10.2   0.5   0.00012      0.45       6      25 ..     140     159 ..     139     162 .. 0.90

  Alignments for each domain:
  == domain 1  score: 0.7 bits;  conditional E-value: 0.14
                SEEEHHHHHHHHHH CS
   EF-hand_1 15 GkIdfeEfkellkk 28
                GkI++e++ + l++
  KOO22766.1 35 GKITKEQLYKTLRT 48
                9******9888876 PP

  == domain 2  score: 16.0 bits;  conditional E-value: 1.7e-06
                HHHHHHHHTTTSSSEEEHHHHHHHHHH CS
   EF-hand_1  2 lkeiFrefDkDgdGkIdfeEfkellkk 28
                +++++ e+D D d  I++eEfk+++ +
  KOO22766.1 59 VEDLIWEVDEDCDSMISWEEFKAMFYR 85
                578899******************975 PP

  == domain 3  score: 15.3 bits;  conditional E-value: 3e-06
                 HHHHTTTSSSEEEHHHHHHHH CS
   EF-hand_1   6 FrefDkDgdGkIdfeEfkell 26 
                 F++ DkD++G Id +E +e+l
  KOO22766.1 104 FMMHDKDQSGSIDMDECMEIL 124
                 899**************9997 PP

  == domain 4  score: 10.2 bits;  conditional E-value: 0.00012
                 HHHHTTTSSSEEEHHHHHHH CS
   EF-hand_1   6 FrefDkDgdGkIdfeEfkel 25 
                 F+  D + d  I+f+Ef+ +
  KOO22766.1 140 FMTHDINSDKEISFSEFLVM 159
                 7889*************876 PP

>> EF-hand_5  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.0      0.47   1.7e+03      14      19 ..      35      40 ..      35      45 .. 0.86
   2 ?    4.0   0.0     0.011        38      16      24 ..      74      82 ..      67      84 .. 0.90
   3 !   11.0   0.1   6.6e-05      0.24       5      20 ..     104     119 ..     101     124 .. 0.83
   4 ?    0.7   0.1      0.12   4.2e+02       9      21 ..     144     156 ..     137     160 .. 0.73

  Alignments for each domain:
  == domain 1  score: -1.2 bits;  conditional E-value: 0.47
                SCE-HH CS
   EF-hand_5 14 GkIske 19
                GkI+ke
  KOO22766.1 35 GKITKE 40
                9***98 PP

  == domain 2  score: 4.0 bits;  conditional E-value: 0.011
                E-HHHHHHH CS
   EF-hand_5 16 IskeELktl 24
                Is eE+k++
  KOO22766.1 74 ISWEEFKAM 82
                9*****985 PP

  == domain 3  score: 11.0 bits;  conditional E-value: 6.6e-05
                 HHHH-SS-SSCE-HHH CS
   EF-hand_5   5 FqaiDlNgDGkIskeE 20 
                 F + D++++G I+++E
  KOO22766.1 104 FMMHDKDQSGSIDMDE 119
                 7777***********9 PP

  == domain 4  score: 0.7 bits;  conditional E-value: 0.12
                 -SS-SSCE-HHHH CS
   EF-hand_5   9 DlNgDGkIskeEL 21 
                 D N D  Is++E+
  KOO22766.1 144 DINSDKEISFSEF 156
                 55666579****9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (203 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       734  (0.0409393); expected 358.6 (0.02)
Passed bias filter:                      498  (0.0277762); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.42u 0.25s 00:00:00.67 Elapsed: 00:00:00.40
# Mc/sec: 1511.71
//
Query:       KOO22767.1  [L=349]
Description: DNA methyltransferase 1-associated protein 1-like protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.4e-30  104.6   0.9    4.7e-30  103.6   0.9    1.5  1  SANT_DAMP1_like  SANT/Myb-like domain of DAMP1
    9.8e-07   28.8   2.0    1.1e-06   28.6   0.2    1.8  2  DMAP1            DNA methyltransferase 1-associated protein 1
     0.0007   19.7   0.2     0.0032   17.6   0.0    2.1  2  Myb_DNA-binding  Myb-like DNA-binding domain
     0.0045   17.2   0.0       0.01   16.1   0.0    1.6  1  Myb_DNA-bind_6   Myb-like DNA-binding domain
  ------ inclusion threshold ------
       0.05   13.8   0.0      0.093   13.0   0.0    1.4  1  PK_C             Pyruvate kinase, alpha/beta domain
      0.068   13.1   0.1       0.19   11.7   0.1    1.7  1  Myb_DNA-bind_7   Myb DNA-binding like
      0.073   13.9   0.1       0.21   12.4   0.0    1.8  2  PRC2_HTH_1       Polycomb repressive complex 2 tri-helical do


Domain annotation for each model (and alignments):
>> SANT_DAMP1_like  SANT/Myb-like domain of DAMP1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  103.6   0.9   1.8e-33   4.7e-30       1      79 [.      79     153 ..      79     154 .. 0.96

  Alignments for each domain:
  == domain 1  score: 103.6 bits;  conditional E-value: 1.8e-33
  SANT_DAMP1_like   1 yaFakfnkkvevpeytdeeYeellkeedWtkeetdyLfdlckeydlrfvviaDryelekkkkrsledlkeryYsvarkl 79 
                      y+Fa+fnkk+++++ytdeeY+++l+++ W+++et  Lfdlc+++dlr++vi+Dr+       r++e+lkeryY+++r l
       KOO22767.1  79 YTFARFNKKCKILTYTDEEYDRHLTHPAWDRTETALLFDLCRRFDLRWPVIHDRFPE----GRTMEQLKERYYEMCRLL 153
                      89*****************************************************55....8**************987 PP

>> DMAP1  DNA methyltransferase 1-associated protein 1 (DMAP1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.1      0.72   1.9e+03      16      36 ..     180     199 ..     176     207 .. 0.75
   2 !   28.6   0.2   4.5e-10   1.1e-06      77     149 ..     232     304 ..     227     312 .. 0.92

  Alignments for each domain:
  == domain 1  score: -1.4 bits;  conditional E-value: 0.72
       DMAP1  16 kkeRekktqdLqkLitaadkq 36 
                 k+eRe+k+ + ++L ++++++
  KOO22767.1 180 KHERERKS-EFERLYARSEEE 199
                 89999995.677887777766 PP

  == domain 2  score: 28.6 bits;  conditional E-value: 4.5e-10
       DMAP1  77 kssGvslRsqrmklPasvgqkKlKaieqlleelkvdlnpvpteeivqafNelrsdlvllyelksalatcefel 149
                 +++ v+lRs+ +      ++k +   e+ ++el++ ++p+pte  ++ +N+ r+++vll+el + l++ e e 
  KOO22767.1 232 RNAEVWLRSKDLSNKRPASDKLANPFERRMQELRMPVRPLPTELNINLYNQCRAHVVLLVELEAKLEKLEAER 304
                 7899*******99999999*********************************************999998875 PP

>> Myb_DNA-binding  Myb-like DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.0       1.1   2.8e+03       7      25 ..      50      71 ..      48      76 .. 0.73
   2 !   17.6   0.0   1.3e-06    0.0032       3      44 ..     106     148 ..     104     149 .. 0.95

  Alignments for each domain:
  == domain 1  score: -1.4 bits;  conditional E-value: 1.1
                     HHHHHHHHHHHHHT...TCHHH CS
  Myb_DNA-binding  7 eEdelLleavkkhG...nrWkk 25
                     +E+ ++ +a ++ G     W+k
       KOO22767.1 50 WEHRKFTNAAREDGlvlRHWSK 71
                     8999999999887765555665 PP

  == domain 2  score: 17.6 bits;  conditional E-value: 1.3e-06
                      SSBHHHHHHHHHHHHHHTTCHHHHHHHHT.SS-HHHHHHHHHH CS
  Myb_DNA-binding   3 kWteeEdelLleavkkhGnrWkkIaerlg.gRtekqcrsrwrn 44 
                      +W   E  lL ++++++  rW  I +r++ gRt +q ++r++ 
       KOO22767.1 106 AWDRTETALLFDLCRRFDLRWPVIHDRFPeGRTMEQLKERYYE 148
                      7****************************************85 PP

>> Myb_DNA-bind_6  Myb-like DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.0   3.9e-06      0.01       1      43 [.     107     150 ..     107     169 .. 0.91

  Alignments for each domain:
  == domain 1  score: 16.1 bits;  conditional E-value: 3.9e-06
  Myb_DNA-bind_6   1 WteeEdeiLlklvekygndWknIaealn.rRtpkqcfdrwknkL 43 
                     W+  E+ +L +l++++   W  I + ++  Rt++q+++r+ +++
      KOO22767.1 107 WDRTETALLFDLCRRFDLRWPVIHDRFPeGRTMEQLKERYYEMC 150
                     9**************************668**********9966 PP

>> PK_C  Pyruvate kinase, alpha/beta domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.0   3.6e-05     0.093      27      92 ..      76     160 ..      73     165 .. 0.87

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 3.6e-05
                 HHHHHHHHT-TSSEEEEEESHHHH...................HHHHHHCTTEEHHH.HHHHH...TTSHHHHHHHHHHHTTSS- CS
        PK_C  27 etArliskyrpkvpiiavtpnelt...................arqlalyrGvypvlvekaktaestdellreavkvakeaglvk 92 
                 +tA  ++++++k++i+ +t++e                     +r++ l + v+   +++ +t e+++e++ e+++ +++a+ ++
  KOO22767.1  76 STAYTFARFNKKCKILTYTDEEYDrhlthpawdrtetallfdlCRRFDLRWPVIHDRFPEGRTMEQLKERYYEMCRLLLAARSAS 160
                 79******************666666678888888889**********************999******9999999998877665 PP

>> Myb_DNA-bind_7  Myb DNA-binding like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.1   7.3e-05      0.19       2      49 ..      98     146 ..      97     151 .. 0.92

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 7.3e-05
  Myb_DNA-bind_7   2 frkrkktkkWskeetekFYkaLsqfGtDFsliaklfpk.rtrrqlKlKF 49 
                     + ++ ++  W+ +et + ++  + f   + +i+  fp+ rt +qlK+++
      KOO22767.1  98 YDRHLTHPAWDRTETALLFDLCRRFDLRWPVIHDRFPEgRTMEQLKERY 146
                     667778899****************************99********99 PP

>> PRC2_HTH_1  Polycomb repressive complex 2 tri-helical domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   8.3e-05      0.21      79      99 ..     129     149 ..     123     151 .. 0.91
   2 ?   -3.9   0.0         7   1.8e+04      31      31 ..     187     187 ..     172     204 .. 0.46

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 8.3e-05
  PRC2_HTH_1  79 IssvFPdkGtpeelkekYkeL 99 
                 I + FP+ +t e+lke+Y e+
  KOO22767.1 129 IHDRFPEGRTMEQLKERYYEM 149
                 7899**************997 PP

  == domain 2  score: -3.9 bits;  conditional E-value: 7
  PRC2_HTH_1  31 s 31 
                 s
  KOO22767.1 187 S 187
                 1 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (349 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       394  (0.0219756); expected 358.6 (0.02)
Passed bias filter:                      299  (0.0166769); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.43u 0.24s 00:00:00.67 Elapsed: 00:00:00.39
# Mc/sec: 2695.69
//
Query:       KOO22768.1  [L=184]
Description: hypothetical protein Ctob_006265 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (184 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       222  (0.0123822); expected 358.6 (0.02)
Passed bias filter:                      195  (0.0108762); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.21s 00:00:00.55 Elapsed: 00:00:00.35
# Mc/sec: 1563.99
//
Query:       KOO22769.1  [L=335]
Description: calmodulin [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.3e-19   68.7   0.4    2.2e-11   44.0   0.0    2.4  2  EF-hand_7  EF-hand domain pair
      5e-18   63.2   0.7    9.6e-06   24.8   0.1    4.0  4  EF-hand_1  EF hand
    7.6e-13   48.1   6.8    3.1e-07   30.1   0.4    4.0  4  EF-hand_8  EF-hand domain pair
      2e-11   42.8   5.8      0.015   15.2   0.0    4.7  4  EF-hand_6  EF-hand domain
    5.4e-11   41.5   2.6     0.0081   15.6   0.0    4.5  4  EF-hand_5  EF hand
     0.0013   19.0   0.1       0.43   10.9   0.0    2.3  2  EF-hand_9  EF-hand domain
     0.0039   17.2   0.1      0.012   15.6   0.0    1.8  2  UPF0154    Uncharacterised protein family (UPF0154)
     0.0046   16.9   1.1        1.4    8.9   0.1    2.9  3  EF-hand_4  Cytoskeletal-regulatory complex EF hand


Domain annotation for each model (and alignments):
>> EF-hand_7  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.0   0.0     1e-14   2.2e-11       9      69 ..     135     189 ..     129     191 .. 0.95
   2 !   22.5   0.3   5.3e-08   0.00012       3      67 ..     203     263 ..     201     266 .. 0.90

  Alignments for each domain:
  == domain 1  score: 44.0 bits;  conditional E-value: 1e-14
   EF-hand_7   9 kelDtdgdgyldkeellrllrkifqgagegsklsdeelellfkefDtdkdGvisfdEFlkl 69 
                 ++ D+dgdg++++ e++ ++r      + g+kl+ +e+++l+  +D d++G i fdEF+ +
  KOO22769.1 135 WLADVDGDGHINPKEIRTVMR------DVGVKLTADEIKQLIASVDADGNGMIEFDEFVSI 189
                 899**************9999......*******************************976 PP

  == domain 2  score: 22.5 bits;  conditional E-value: 5.3e-08
   EF-hand_7   3 klkeaFkelDtdgdgyldkeellrllrkifqgagegsklsdeelellfkefD.tdkdGvisfdEFl 67 
                 +l eaF  lD+dg+g+ld + +++ l++         +ls+ee + l+ e+D  d+dG++s+  F+
  KOO22769.1 203 ELDEAFAVLDRDGSGMLDLSFVRDQLTN-----LGSHPLSREECDSLLSEVDgVDDDGRVSMRAFK 263
                 7889********************9999.....889999************648999****97666 PP

>> EF-hand_1  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.6   0.0     4e-07    0.0009       8      28 ..     136     156 ..     132     157 .. 0.92
   2 !   24.8   0.1   4.3e-09   9.6e-06       1      28 [.     165     192 ..     165     193 .. 0.94
   3 !   15.4   0.0   4.5e-06      0.01       1      19 [.     203     221 ..     203     222 .. 0.93
   4 ?   -1.5   0.0       1.1   2.4e+03      12      24 ..     252     264 ..     251     265 .. 0.77

  Alignments for each domain:
  == domain 1  score: 18.6 bits;  conditional E-value: 4e-07
                 HHTTTSSSEEEHHHHHHHHHH CS
   EF-hand_1   8 efDkDgdGkIdfeEfkellkk 28 
                 ++D+DgdG+I+ +E ++++++
  KOO22769.1 136 LADVDGDGHINPKEIRTVMRD 156
                 68*****************86 PP

  == domain 2  score: 24.8 bits;  conditional E-value: 4.3e-09
                 HHHHHHHHHTTTSSSEEEHHHHHHHHHH CS
   EF-hand_1   1 elkeiFrefDkDgdGkIdfeEfkellkk 28 
                 e+k++++ +D Dg+G I+f+Ef+++l++
  KOO22769.1 165 EIKQLIASVDADGNGMIEFDEFVSILAS 192
                 799*********************9975 PP

  == domain 3  score: 15.4 bits;  conditional E-value: 4.5e-06
                 HHHHHHHHHTTTSSSEEEH CS
   EF-hand_1   1 elkeiFrefDkDgdGkIdf 19 
                 el+e+F+++D+Dg+G +d+
  KOO22769.1 203 ELDEAFAVLDRDGSGMLDL 221
                 79**************996 PP

  == domain 4  score: -1.5 bits;  conditional E-value: 1.1
                 TSSSEEEHHHHHH CS
   EF-hand_1  12 DgdGkIdfeEfke 24 
                 D dG+++   fk+
  KOO22769.1 252 DDDGRVSMRAFKA 264
                 8899999887776 PP

>> EF-hand_8  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.5   0.0     0.028        63      32      47 ..     134     149 ..     133     150 .. 0.85
   2 !   30.1   0.4   1.4e-10   3.1e-07       2      52 ..     142     190 ..     141     193 .. 0.93
   3 !   11.4   0.2   9.5e-05      0.21      10      45 ..     186     221 ..     186     222 .. 0.80
   4 !    9.2   0.0   0.00046         1      18      45 ..     232     259 ..     224     266 .. 0.76

  Alignments for each domain:
  == domain 1  score: 3.5 bits;  conditional E-value: 0.028
   EF-hand_8  32 frefDtdgdGkisfeE 47 
                 ++++D dgdG+i+ +E
  KOO22769.1 134 VWLADVDGDGHINPKE 149
                 6899********9665 PP

  == domain 2  score: 30.1 bits;  conditional E-value: 1.4e-10
   EF-hand_8   2 kgkItreelrrilrilglkkglseeevdilfrefDtdgdGkisfeEFcvll 52 
                 +g I + e r+ +r +g k  l+++e+  l+  +D dg+G+i f+EF+  l
  KOO22769.1 142 DGHINPKEIRTVMRDVGVK--LTADEIKQLIASVDADGNGMIEFDEFVSIL 190
                 788999*******999***..**************************9765 PP

  == domain 3  score: 11.4 bits;  conditional E-value: 9.5e-05
   EF-hand_8  10 lrril.rilglkkglseeevdilfrefDtdgdGkisf 45 
                 +++il + +  + g ++ e+d+ f  +D+dg+G++++
  KOO22769.1 186 FVSILaSNMLRE-GRGDAELDEAFAVLDRDGSGMLDL 221
                 567776664433.6899******************96 PP

  == domain 4  score: 9.2 bits;  conditional E-value: 0.00046
   EF-hand_8  18 glkkglseeevdilfrefD.tdgdGkisf 45 
                 g +  ls ee+d+l++e+D  d+dG++s 
  KOO22769.1 232 GSH-PLSREECDSLLSEVDgVDDDGRVSM 259
                 433.69*************5578888875 PP

>> EF-hand_6  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.0   6.8e-06     0.015       9      30 ..     137     157 ..     136     173 .. 0.90
   2 !   12.8   0.1   3.9e-05     0.087       7      27 ..     171     191 ..     165     195 .. 0.84
   3 !   13.7   0.1     2e-05     0.046       1      20 [.     203     222 ..     203     232 .. 0.81
   4 ?   -0.3   0.1      0.61   1.4e+03      11      24 ..     251     264 ..     240     265 .. 0.77

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 6.8e-06
   EF-hand_6   9 fDkdgdGkidaeElrkalrkal 30 
                  D+dgdG+i+++E+r ++r ++
  KOO22769.1 137 ADVDGDGHINPKEIRTVMR-DV 157
                 59*****************.44 PP

  == domain 2  score: 12.8 bits;  conditional E-value: 3.9e-05
   EF-hand_6   7 klfDkdgdGkidaeElrkalr 27 
                    D dg+G i ++E++++l 
  KOO22769.1 171 ASVDADGNGMIEFDEFVSILA 191
                 5679**************996 PP

  == domain 3  score: 13.7 bits;  conditional E-value: 2e-05
   EF-hand_6   1 elreaFklfDkdgdGkidae 20 
                 el+eaF  +D+dg+G +d +
  KOO22769.1 203 ELDEAFAVLDRDGSGMLDLS 222
                 689**************987 PP

  == domain 4  score: -0.3 bits;  conditional E-value: 0.61
   EF-hand_6  11 kdgdGkidaeElrk 24 
                 +d+dG +++  +++
  KOO22769.1 251 VDDDGRVSMRAFKA 264
                 79999999877765 PP

>> EF-hand_5  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.0   3.6e-06    0.0081       8      25 .]     137     154 ..     136     154 .. 0.93
   2 !   11.9   0.2   5.3e-05      0.12       4      22 ..     169     187 ..     160     190 .. 0.85
   3 !    9.4   0.1   0.00033      0.75       1      18 [.     204     221 ..     204     222 .. 0.87
   4 ?    0.9   0.0      0.16   3.7e+02      11      18 ..     252     259 ..     251     265 .. 0.86

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 3.6e-06
                 H-SS-SSCE-HHHHHHHH CS
   EF-hand_5   8 iDlNgDGkIskeELktlv 25 
                 +D++gDG+I++ E +t++
  KOO22769.1 137 ADVDGDGHINPKEIRTVM 154
                 7**************987 PP

  == domain 2  score: 11.9 bits;  conditional E-value: 5.3e-05
                 HHHHH-SS-SSCE-HHHHH CS
   EF-hand_5   4 tFqaiDlNgDGkIskeELk 22 
                 +   +D++g G I ++E+ 
  KOO22769.1 169 LIASVDADGNGMIEFDEFV 187
                 55679************96 PP

  == domain 3  score: 9.4 bits;  conditional E-value: 0.00033
                 HHHHHHHH-SS-SSCE-H CS
   EF-hand_5   1 lkdtFqaiDlNgDGkIsk 18 
                 l+++F  +D +g+G ++ 
  KOO22769.1 204 LDEAFAVLDRDGSGMLDL 221
                 5678**********9985 PP

  == domain 4  score: 0.9 bits;  conditional E-value: 0.16
                 S-SSCE-H CS
   EF-hand_5  11 NgDGkIsk 18 
                 + DG++s+
  KOO22769.1 252 DDDGRVSM 259
                 88****97 PP

>> EF-hand_9  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.9   0.0   0.00019      0.43       7      62 ..     137     190 ..     132     194 .. 0.89
   2 !    6.0   0.0    0.0068        15       2      60 ..     206     264 ..     205     268 .. 0.87

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00019
   EF-hand_9   7 cDtqktGrVpvsrlidyLravtaqdpeeseLeelakelDPdgedasvdldtflrvm 62 
                  D++  G +  +++ +++r v+ + + + e+ +l +++D dg+ + +++d f  ++
  KOO22769.1 137 ADVDGDGHINPKEIRTVMRDVGVKLTAD-EIKQLIASVDADGN-GMIEFDEFVSIL 190
                 699999*****************65555.899***********.********9987 PP

  == domain 2  score: 6.0 bits;  conditional E-value: 0.0068
   EF-hand_9   2 tvFevcDtqktGrVpvsrlidyLravtaqdpees.eLeelakelDPdgedasvdldtflr 60 
                   F v D++  G   +s + d L   ++  p    e ++l +e+D  + d+ v +  f++
  KOO22769.1 206 EAFAVLDRDGSGMLDLSFVRDQLTNLGS-HPLSReECDSLLSEVDGVDDDGRVSMRAFKA 264
                 569*************************.5555449*********999999999999886 PP

>> UPF0154  Uncharacterised protein family (UPF0154)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.0   5.6e-06     0.012      29      58 ..     144     173 ..     138     175 .. 0.94
   2 ?   -2.2   0.3       1.9   4.3e+03      46      54 ..     271     279 ..     269     282 .. 0.82

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 5.6e-06
     UPF0154  29 pinekmirammkqmGrkPSekqikqvmrsm 58 
                  in k ir+ m+ +G k++   ikq+++s+
  KOO22769.1 144 HINPKEIRTVMRDVGVKLTADEIKQLIASV 173
                 59************************9997 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 1.9
     UPF0154  46 PSekqikqv 54 
                 P+ kq++q 
  KOO22769.1 271 PNSKQMQQA 279
                 899999996 PP

>> EF-hand_4  Cytoskeletal-regulatory complex EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.2   0.0    0.0045        10      46      70 ..     132     155 ..     121     159 .. 0.82
   2 !    8.9   0.1   0.00062       1.4      38      68 ..     159     189 ..     149     195 .. 0.84
   3 ?   -2.3   0.0         2   4.5e+03      54      65 ..     251     262 ..     236     277 .. 0.64

  Alignments for each domain:
  == domain 1  score: 6.2 bits;  conditional E-value: 0.0045
   EF-hand_4  46 ekiwdladidedgkldfeefciamr 70 
                   +w lad+d dg+++ +e   +mr
  KOO22769.1 132 RTVW-LADVDGDGHINPKEIRTVMR 155
                 4566.9************9999998 PP

  == domain 2  score: 8.9 bits;  conditional E-value: 0.00062
   EF-hand_4  38 skleedklekiwdladidedgkldfeefcia 68 
                  kl+ d+++++    d d +g+++f+ef+ +
  KOO22769.1 159 VKLTADEIKQLIASVDADGNGMIEFDEFVSI 189
                 58999***********************855 PP

  == domain 3  score: -2.3 bits;  conditional E-value: 2
   EF-hand_4  54 idedgkldfeef 65 
                 +d+dg++ +  f
  KOO22769.1 251 VDDDGRVSMRAF 262
                 566666555444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (335 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       720  (0.0401584); expected 358.6 (0.02)
Passed bias filter:                      570  (0.0317921); expected 358.6 (0.02)
Passed Vit filter:                        58  (0.00323498); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.47u 0.24s 00:00:00.71 Elapsed: 00:00:00.37
# Mc/sec: 2708.19
//
Query:       KOO22770.1  [L=150]
Description: 40s ribosomal protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.6e-26   91.2   1.3    3.2e-26   90.9   1.3    1.1  1  Ribosomal_L7Ae  Ribosomal protein L7Ae/L30e/S12e/Gadd45 famil


Domain annotation for each model (and alignments):
>> Ribosomal_L7Ae  Ribosomal protein L7Ae/L30e/S12e/Gadd45 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   90.9   1.3   1.8e-30   3.2e-26       2      94 ..      37     130 ..      36     131 .. 0.97

  Alignments for each domain:
  == domain 1  score: 90.9 bits;  conditional E-value: 1.8e-30
                     HHHHHHHHHHHHTEEEESHHHHHHHHHTTTESEEEEETTSSSGGHHHHHHHHHHHTTEEEEEESCHHHHHHHTTSSSE.CSEEEEEESTTTHHH CS
  Ribosomal_L7Ae   2 aieevlkkakkagklvlGlkevtkalergeaklvilAedvepeekkkllealckekevpyvkvkskkeLGelvgkkrp.vsalaikdegdskdl 94 
                     a+++vlk+a+ +++l++Gl+e++kal+ g+akl++l+++++++ ++kl+ealc+e++v ++kv++ k+LGe+vg+ +  +++ a+k++g+s+++
      KOO22770.1  37 ALQKVLKNALIHDGLRRGLHECAKALDAGKAKLCVLSQSCNEPAYTKLIEALCAEHGVDLMKVSDGKQLGEWVGLAKVdKEGTARKVVGCSSVV 130
                     799*************************************************************************999************976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (150 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       462  (0.0257683); expected 358.6 (0.02)
Passed bias filter:                      385  (0.0214736); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.22s 00:00:00.57 Elapsed: 00:00:00.36
# Mc/sec: 1263.39
//
Query:       KOO22771.1  [L=472]
Description: phosphofructokinase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.8e-56  189.7   0.2    8.2e-56  189.4   0.2    1.1  1  PFK       Phosphofructokinase


Domain annotation for each model (and alignments):
>> PFK  Phosphofructokinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  189.4   0.2   4.6e-60   8.2e-56       3     282 ..     107     404 ..     105     406 .. 0.89

  Alignments for each domain:
  == domain 1  score: 189.4 bits;  conditional E-value: 4.6e-60
                 EEEEESS--TTHHHHHHHHHHHHHHTT..-EEEEETTHHHHHHTT...-EEEE-SGGGTT-TT--S-TT-----GGGGSHHHHHHHHHHHHHHT--EEE CS
         PFK   3 ailtsGGdapGmNaairavvrtaikkg..levygireGfeGliee...eiekltledvsgilsegGtiLgsaRskefkeregrkkaaenlkklgidaLv 96 
                 a +t+GG +pG+N++i++v++   + +   +++g+  G++Gl +    e  +l+ e vs+i+ +gG++L+  R    +      +++++l+++gi++L+
  KOO22771.1 107 ALVTCGGLCPGLNSIIQGVTNCLWRDYgvRQIIGVTAGYNGLTNPsenEWIELNPELVSEIHMKGGSVLKAGRGGF-D----ASAICDTLRAHGINMLF 200
                 789******************9988777666***********6665554556**********************64.3....789************** PP

                 EEESHHHHHHHHHHHHT..T....--EEEEEEETT---TT-S--EEHHHHHHHHHHHHHHHHHHHHHH.T-EEEEEES-TT-THHHHHHHHHH.T-SEE CS
         PFK  97 viGGdgslkganklseerkglleelkivgiPkTidNDipgtdytiGfdTAlntiveaidklkstaksh.krvfvvEvmGrncGwlAlmaglag.gadvi 193
                 viGGdg+  + + l ee ++ + +++ivg+Pk+idND+   d t+Gfd+A++ ++ +i++   +a+s  k v +v+ mGr++G++A++a+la+   d++
  KOO22771.1 201 VIGGDGTQFAGHLLYEEARKRKLDVSIVGVPKSIDNDVLFVDKTFGFDSAVEAAAGVIRNGWVEATSCaKAVSIVKLMGRDAGFVAAHASLASnLVDLC 299
                 *****************9999999********************************************9************************56**** PP

                 E-TTS---HHHHHHHHHHHHT.T-S-EEEEEESSS..S-.....................HHHHHHHHHHHHSS-EEEEE-GGGGG-S---HHHHHHHH CS
         PFK 194 lipEepfdieeliekikklrkkgkkksiivvaEgakdkeg..................iiaeelakeieektgievrvtvlGhlqrGgspsafDrilat 274
                 l+pE +++++++ + ++   + +k + +ivvaEga +++                      + l k +++ +g ++ +  ++++ r+ + ++ D i++ 
  KOO22771.1 300 LVPEVDVELDDIFSYVDATLE-RKGHMVIVVAEGAGQRHVstgkkdasghtvygdvgvFLRDTLNKYLKA-KGGRTFYIDPSYIIRSVPITPNDHIYCA 396
                 *******************96.78899********95444566788999*99995554444444444433.466************************* PP

                 HHHHHHHH CS
         PFK 275 rlGikave 282
                 rl+ +av+
  KOO22771.1 397 RLANNAVH 404
                 ******97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (472 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       398  (0.0221987); expected 358.6 (0.02)
Passed bias filter:                      353  (0.0196888); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.52u 0.25s 00:00:00.77 Elapsed: 00:00:00.42
# Mc/sec: 3337.70
//
Query:       KOO22772.1  [L=250]
Description: hypothetical protein Ctob_006269 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    9.8e-12   44.9   9.5      0.038   14.2   0.0    4.4  4  DUF2475   Protein of unknown function (DUF2475)
  ------ inclusion threshold ------
       0.15   12.1   9.3        8.6    6.5   0.2    4.0  4  Pax2_C    Paired-box protein 2 C terminal
       0.32    9.9   1.2         15    4.4   0.0    2.8  4  NAGLU     Alpha-N-acetylglucosaminidase (NAGLU) tim-barrel do


Domain annotation for each model (and alignments):
>> DUF2475  Protein of unknown function (DUF2475)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.2   0.0   6.3e-06     0.038       4      20 ..      53      69 ..      51      72 .. 0.90
   2 !   11.3   0.1     5e-05       0.3       4      21 ..     120     137 ..     118     145 .. 0.82
   3 !   12.7   0.1   1.8e-05      0.11       4      23 ..     179     198 ..     178     206 .. 0.87
   4 !    9.8   0.2   0.00015      0.92       7      22 ..     230     245 ..     229     249 .. 0.94

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 6.3e-06
     DUF2475  4 lmPGYrGyvPqvkysfG 20
                 +PGY+G+vP ++  fG
  KOO22772.1 53 VVPGYQGHVPRARDAFG 69
                69**********99998 PP

  == domain 2  score: 11.3 bits;  conditional E-value: 5e-05
     DUF2475   4 lmPGYrGyvPqvkysfGd 21 
                  mPGY+G++P  + ++ +
  KOO22772.1 120 VMPGYAGFRPGSRDHHAQ 137
                 7*********99887766 PP

  == domain 3  score: 12.7 bits;  conditional E-value: 1.8e-05
     DUF2475   4 lmPGYrGyvPqvkysfGdtY 23 
                 ++PGY+G+vP + ++ G ++
  KOO22772.1 179 IVPGYSGHVPLAITKAGHSH 198
                 69*************99987 PP

  == domain 4  score: 9.8 bits;  conditional E-value: 0.00015
     DUF2475   7 GYrGyvPqvkysfGdt 22 
                 GY+G+vP ++ s+G t
  KOO22772.1 230 GYSGHVPGARDSYGTT 245
                 9*************98 PP

>> Pax2_C  Paired-box protein 2 C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.5   0.2    0.0014       8.6      34      60 ..      53      78 ..      47      85 .. 0.83
   2 ?    2.2   0.0      0.03   1.8e+02       8      39 ..      84     114 ..      77     143 .. 0.79
   3 ?    5.6   0.6    0.0028        16      28      45 ..     173     190 ..     168     228 .. 0.67
   4 ?    1.3   0.5     0.056   3.4e+02      29      52 ..     222     244 ..     200     248 .. 0.69

  Alignments for each domain:
  == domain 1  score: 6.5 bits;  conditional E-value: 0.0014
      Pax2_C 34 tLpGypPHvPptgqgsystsalaGmvp 60
                ++pGy+ HvP  ++  +  sa+ G+ p
  KOO22772.1 53 VVPGYQGHVP-RARDAFGVSAMGGLAP 78
                58********.7788899999999876 PP

  == domain 2  score: 2.2 bits;  conditional E-value: 0.03
      Pax2_C   8 afahaasvygqfqsqslvagrdlasttLpGyp 39 
                 +  ++  ++++ + +++v gr+ a t+ p y+
  KOO22772.1  84 THKKM-GSMTGHEKEQIVLGREPAETVFPEYK 114
                 33334.456667778899******99999885 PP

  == domain 3  score: 5.6 bits;  conditional E-value: 0.0028
      Pax2_C  28 rdlasttLpGypPHvPpt 45 
                 r++++  +pGy  HvP +
  KOO22772.1 173 RQVVGGIVPGYSGHVPLA 190
                 889999**********43 PP

  == domain 4  score: 1.3 bits;  conditional E-value: 0.056
      Pax2_C  29 dlasttLpGypPHvPptgqgsyst 52 
                 ++   +  Gy  HvP  ++ sy t
  KOO22772.1 222 EVQQMAKSGYSGHVP-GARDSYGT 244
                 455555679999999.45566655 PP

>> NAGLU  Alpha-N-acetylglucosaminidase (NAGLU) tim-barrel domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.3   0.0    0.0056        33     112     123 ..      53      64 ..      49      92 .. 0.89
   2 ?   -2.9   0.0      0.44   2.6e+03     112     124 ..     120     132 ..     118     139 .. 0.77
   3 ?    4.4   0.0    0.0025        15     112     127 ..     179     194 ..     175     213 .. 0.85
   4 ?   -2.4   0.0      0.31   1.8e+03     114     123 ..     229     238 ..     216     243 .. 0.81

  Alignments for each domain:
  == domain 1  score: 3.3 bits;  conditional E-value: 0.0056
                 EEE--S-EE-TT CS
       NAGLU 112 vlpaFaGhvPka 123
                 v+p++ GhvP+a
  KOO22772.1  53 VVPGYQGHVPRA 64 
                 99********97 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 0.44
                 EEE--S-EE-TTH CS
       NAGLU 112 vlpaFaGhvPkal 124
                 v+p++aG+ P + 
  KOO22772.1 120 VMPGYAGFRPGSR 132
                 99******99765 PP

  == domain 3  score: 4.4 bits;  conditional E-value: 0.0025
                 EEE--S-EE-TTHHHH CS
       NAGLU 112 vlpaFaGhvPkalkek 127
                 ++p+++GhvP a+++ 
  KOO22772.1 179 IVPGYSGHVPLAITKA 194
                 89********999875 PP

  == domain 4  score: -2.4 bits;  conditional E-value: 0.31
                 E--S-EE-TT CS
       NAGLU 114 paFaGhvPka 123
                  +++GhvP a
  KOO22772.1 229 SGYSGHVPGA 238
                 699****975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (250 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       233  (0.0129957); expected 358.6 (0.02)
Passed bias filter:                      200  (0.0111551); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.40u 0.23s 00:00:00.63 Elapsed: 00:00:00.39
# Mc/sec: 1920.61
//
Query:       KOO22773.1  [L=363]
Description: hypothetical protein Ctob_001370 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (363 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1300  (0.0725082); expected 358.6 (0.02)
Passed bias filter:                      265  (0.0147805); expected 358.6 (0.02)
Passed Vit filter:                        54  (0.00301188); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.61u 0.30s 00:00:00.90 Elapsed: 00:00:00.46
# Mc/sec: 2371.92
//
Query:       KOO22774.1  [L=84]
Description: hypothetical protein Ctob_001369 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (84 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       523  (0.0291706); expected 358.6 (0.02)
Passed bias filter:                      297  (0.0165653); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.24s 00:00:00.58 Elapsed: 00:00:00.38
# Mc/sec: 659.03
//
Query:       KOO22775.1  [L=189]
Description: snf2-related protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.1e-15   57.9   0.0    1.6e-15   57.4   0.0    1.2  1  Helicase_C  Helicase conserved C-terminal domain


Domain annotation for each model (and alignments):
>> Helicase_C  Helicase conserved C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.4   0.0   9.2e-20   1.6e-15      15     111 .]       5     106 ..       2     106 .. 0.86

  Alignments for each domain:
  == domain 1  score: 57.4 bits;  conditional E-value: 9.2e-20
                 TTSEEEEEESSHHHHHH..HHHHHHHTTSTEEEESTTSTHHHHHHHHHHHH..TTSSS.EEEESGGGTSSSTSTTESEEEESSSSSSHHHHHHHHTTSS CS
  Helicase_C  15 eggkilifvntidrlek..vklllekkgikvavlhgelpqnereeileqfn..kgesd.vLiatdvaerGidipkvnlVinfdlprnvtsyiqriGRtg 108
                  g+k+++f+ ++  l+     l+ + +++++ +++g+l ++er+++l++f   +   d +L++ + ++ G++i+ +n++i++d+++n++ + q+i+Rt+
  KOO22775.1   5 AGEKAIVFSWFKGALDVleGVLVARLHKMSCERIDGDLDARERRAVLDRFGrpDCAADvLLMTLSTGGVGLNITAANHCIFLDPWWNPAVIEQAIDRTH 103
                 589**********997764333344459**********************75556678667888*********************************** PP

                 STT CS
  Helicase_C 109 Rag 111
                 R+g
  KOO22775.1 104 RIG 106
                 *97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (189 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       299  (0.0166769); expected 358.6 (0.02)
Passed bias filter:                      276  (0.0153941); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.22s 00:00:00.60 Elapsed: 00:00:00.37
# Mc/sec: 1526.05
//
Query:       KOO22776.1  [L=1526]
Description: hypothetical protein Ctob_001380 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
     0.0024   17.5   0.9        1.1    9.1   0.1    2.7  2  SHOCT           Short C-terminal domain
     0.0035   17.5   1.1          1    9.6   0.1    3.0  2  eIF_4G1         Eukaryotic translation initiation factor 4G1
  ------ inclusion threshold ------
       0.24    9.9   0.1       0.55    8.8   0.1    1.5  1  Glyco_hydro_39  Glycosyl hydrolases family 39


Domain annotation for each model (and alignments):
>> SHOCT  Short C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.5   0.1    0.0012       7.3       2      27 ..      38      63 ..      37      64 .. 0.90
   2 !    9.1   0.1   0.00018       1.1       2      27 ..     713     738 ..     712     739 .. 0.92

  Alignments for each domain:
  == domain 1  score: 6.5 bits;  conditional E-value: 0.0012
       SHOCT  2 aLekLkeLyarGeIteEEFeakKakL 27
                +++ Lke + +G It  E+ ++  kL
  KOO22776.1 38 KMDALKEAKVAGDITIVEYAQAISKL 63
                7889****************998887 PP

  == domain 2  score: 9.1 bits;  conditional E-value: 0.00018
       SHOCT   2 aLekLkeLyarGeIteEEFeakKakL 27 
                 +++ Lk+ +++G It  E+ ++ akL
  KOO22776.1 713 EMAALKAAKDAGDITVVEYAEAIAKL 738
                 6889******************9998 PP

>> eIF_4G1  Eukaryotic translation initiation factor 4G1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.3   0.1    0.0036        22       4      41 ..      27      64 ..      24      77 .. 0.83
   2 !    9.6   0.1   0.00017         1       4      42 ..     702     752 ..     699     759 .. 0.79

  Alignments for each domain:
  == domain 1  score: 5.3 bits;  conditional E-value: 0.0036
     eIF_4G1  4 kkaeeeptisaflesLksArpiediysvkYPegiesPd 41
                +ka+   + ++ + +Lk+A+   di+ v+Y + i +  
  KOO22776.1 27 AKAARAQELKEKMDALKEAKVAGDITIVEYAQAISKLR 64
                677788899999********************998655 PP

  == domain 2  score: 9.6 bits;  conditional E-value: 0.00017
     eIF_4G1   4 kkaeeeptisaflesLksArpiediysvkYPegie............sPdp 42 
                 +++e + ++ a +++Lk+A++  di+ v+Y e i+            sP+p
  KOO22776.1 702 QAKESKEKMDAEMAALKAAKDAGDITVVEYAEAIAklrqeqqagfgfSPKP 752
                 56788889999***********************95555555555555555 PP

>> Glyco_hydro_39  Glycosyl hydrolases family 39
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.8   0.1   9.2e-05      0.55     238     315 ..      14      91 ..       4     109 .. 0.79

  Alignments for each domain:
  == domain 1  score: 8.8 bits;  conditional E-value: 9.2e-05
  Glyco_hydro_39 238 ssiyileqeeaavekvkrllpefkdtvkiikdeadPllpvalteyaasvskvdaqHdnpanaaaivrt..llsednafls 315
                      s+  +e++e+  +k+ r  +e+k++++ +k+ +     +++ eya+ +sk    H+   +aaa++r+  +l+e +++++
      KOO22776.1  14 PSEEQPEEMEEDPAKAAR-AQELKEKMDALKEAKVA-GDITIVEYAQAISKLRHEHQAAEQAAAAARKreVLQEYETMIG 91 
                     467788999999999999.89*****8877766655.899*******************777777776569999888776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1526 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1416  (0.0789782); expected 358.6 (0.02)
Passed bias filter:                      498  (0.0277762); expected 358.6 (0.02)
Passed Vit filter:                       112  (0.00624686); expected 17.9 (0.001)
Passed Fwd filter:                        60  (0.00334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 1.67u 0.35s 00:00:02.02 Elapsed: 00:00:00.55
# Mc/sec: 8389.21
//
Query:       KOO22777.1  [L=3419]
Description: conserved unknown protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.1e-24   87.0   0.0    1.4e-23   83.4   0.0    2.3  1  DUF3638          Protein of unknown function (DUF3638)
    2.5e-15   55.6   0.3    7.2e-15   54.1   0.3    1.9  1  DUF3645          Protein of unknown function (DUF3645)
    3.2e-05   24.3   0.0       0.49   10.9   0.0    3.8  3  EF-hand_7        EF-hand domain pair
    0.00012   20.5   0.0    0.00022   19.7   0.0    1.3  1  Vps62            Vacuolar protein sorting-associated protein 
     0.0002   21.5   0.0    0.00045   20.4   0.0    1.6  1  Alpha_adaptin_C  Alpha adaptin AP2, C-terminal domain
    0.00034   20.3   0.1        5.9    7.1   0.0    4.8  4  EF-hand_6        EF-hand domain
     0.0054   16.2   0.9        9.6    5.9   0.2    3.4  3  EF-hand_5        EF hand
     0.0071   15.8   0.1        3.2    7.5   0.0    4.1  4  EF-hand_1        EF hand
  ------ inclusion threshold ------
       0.11   12.4   1.6       0.75    9.7   0.0    3.1  3  EF-hand_8        EF-hand domain pair


Domain annotation for each model (and alignments):
>> DUF3638  Protein of unknown function (DUF3638)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   83.4   0.0   7.1e-27   1.4e-23       9     216 ..    1656    1894 ..    1651    1901 .. 0.88

  Alignments for each domain:
  == domain 1  score: 83.4 bits;  conditional E-value: 7.1e-27
     DUF3638    9 hpewLlleiesniliReeQaevAkemispssgensv.lQLnmGeGKssvIvPivaaaladgkkLvrvivlkpllkqmaqlLvskL.ggllnrrvyhl 103 
                   p+ L++e  ++i++R+ Q++   ++++ +++ +sv  Q+ mGeGK++ + P++a++ladg++Lv  +v+ pll+ ++q++   + +g l + v  +
  KOO22777.1 1656 DPRILVFEFCAGIVLRPPQVHLLDKLVRCARSGGSVcHQMLMGEGKTTTVSPLLALMLADGTQLVMQVVPAPLLRFTLQVMRGVFrSGPLRKTVATF 1752
                  6899**********************998866666527*********************************************************** PP

     DUF3638  104 pfsRslklteekaeairklleeclkeggvllvqpehilSfkLmglekllskkeek..............................vakelletqkwl 170 
                   f+R++ ++e+ + a +       ++g++++ +p  + +f L+ le l   ++++                              ++++  ++ ++l
  KOO22777.1 1753 AFDRRTVVDENLLLAAH----LAIQQGAIMVSTPASVKAFLLKLLELLHLLDTGQyprmhmslgqkarklfgfkvppeagfdkpfLKAQAARAVQML 1845
                  ******99988766544....45689*******************999887788789999********************99999444444444444 PP

     DUF3638  171 d..essrdilDEsDells.vkfeLiYtvGsqepvegspdRwkvvqevLs 216 
                  +  + +  ++DE+D +l+  k eL +++G+++p++++p+Rw++   +L+
  KOO22777.1 1846 QywRGAVAVIDEVDIVLHpLKSELNWPLGDRHPLDFNPTRWEMPWYLLN 1894
                  31157889*********9459*********************9887775 PP

>> DUF3645  Protein of unknown function (DUF3645)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.1   0.3   3.6e-18   7.2e-15       1      33 []    2053    2085 ..    2053    2085 .. 0.97

  Alignments for each domain:
  == domain 1  score: 54.1 bits;  conditional E-value: 3.6e-18
     DUF3645    1 dpsRtllAVPYrAKDvPserSEFsHpDvvIvLT 33  
                  ++sR+ lAVP+++KD Ps+ SEF+HpDv+I+LT
  KOO22777.1 2053 PRSRRYLAVPFVGKDAPSHASEFAHPDVAIGLT 2085
                  589*****************************9 PP

>> EF-hand_7  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.5   0.0       0.1     2e+02      39      62 ..    2118    2140 ..    2094    2143 .. 0.72
   2 !    5.9   0.0     0.009        18       2      30 ..    2651    2679 ..    2650    2727 .. 0.75
   3 !   10.9   0.0   0.00025      0.49       5      65 ..    2904    2958 ..    2902    2961 .. 0.95

  Alignments for each domain:
  == domain 1  score: 2.5 bits;  conditional E-value: 0.1
   EF-hand_7   39 sklsdeelellfkefDtdkdGvis 62  
                   k ++ ++ + +k +D++kdG ++
  KOO22777.1 2118 LK-RPSSIMKASKSIDLNKDGMVD 2140
                  33.45779999**********986 PP

  == domain 2  score: 5.9 bits;  conditional E-value: 0.009
   EF-hand_7    2 eklkeaFkelDtdgdgyldkeellrllrk 30  
                  ++l ++F+++D  g+g l ++ l+ +l  
  KOO22777.1 2651 QRLSRVFQMYDAEGRGALGEQRLRTILSD 2679
                  68889****************99966653 PP

  == domain 3  score: 10.9 bits;  conditional E-value: 0.00025
   EF-hand_7    5 keaFkelDtdgdgyldkeellrllrkifqgagegsklsdeelellfkefDtdkdGvisfdE 65  
                  +++F ++ + ++g l+  el   l+        g ++ + el +l+k +D+d dG +s++E
  KOO22777.1 2904 HDIFFAFNQTRNGLLSCGELGAGLT------WLGLPFGESELIALLKGLDKDTDGLLSLEE 2958
                  789******************9999......8999999999******************99 PP

>> Vps62  Vacuolar protein sorting-associated protein 62
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.7   0.0   1.1e-07   0.00022      85     175 ..    3087    3175 ..    3080    3191 .. 0.78

  Alignments for each domain:
  == domain 1  score: 19.7 bits;  conditional E-value: 1.1e-07
       Vps62   85 LvakdvskskekeaLkkPldytlvwsseslkeeeekagyfWlPvppe.GykalGlvvttspekPeldevrCvrad.ltdeceaeelileaesk 175 
                  L++ ++ ++   + L +Pl y l w  +++k       y+W  vpp+  + a+G++ t+s+++Pel  +rCv +  l  e e+ + ++++  +
  KOO22777.1 3087 LASSESMSAVVDQLLPHPLRYRLAWHDAHAK----PPLYIWRAVPPSaDFVAVGMIATSSDDQPELTAMRCVPTRwLSAEKEEPKKVWQHGGQ 3175
                  4555555555688999*********875443....478******997269**********************765377788888888886655 PP

>> Alpha_adaptin_C  Alpha adaptin AP2, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.4   0.0   2.2e-07   0.00045       4      88 ..    3293    3379 ..    3291    3412 .. 0.72

  Alignments for each domain:
  == domain 1  score: 20.4 bits;  conditional E-value: 2.2e-07
  Alpha_adaptin_C    4 ptelssedFfkrWkqlggapreaqkifklkaaekeideetvrkvleGfrlavlenvdpnpenivgagvlhtsesgk......vgcLlrlep 88  
                       p  ls +d+f  W+    ++ +a+ +f    a++e+++  +  +++ ++lavle+vdp p+ni +ag +   ++          cLlr+e+
       KOO22777.1 3293 PWPLSKDDYFGMWRAPNLKETQARITFY---AAHEVSTIKAM-LMNYVKLAVLEGVDPSPNNICAAGAIVCLNAPMppapgsHHCLLRIEI 3379
                       567999********99888888888888...66776654433.68999*******************987765432344444899999995 PP

>> EF-hand_6  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.4   0.0       0.2   3.9e+02       5      20 ..    2127    2142 ..    2123    2148 .. 0.83
   2 !    7.1   0.0    0.0029       5.9       2      30 ..    2653    2680 ..    2652    2682 .. 0.89
   3 ?    2.6   0.0     0.084   1.7e+02       3      27 ..    2904    2928 ..    2903    2931 .. 0.90
   4 ?    2.3   0.0       0.1     2e+02       2      23 ..    2939    2960 ..    2938    2966 .. 0.84

  Alignments for each domain:
  == domain 1  score: 1.4 bits;  conditional E-value: 0.2
   EF-hand_6    5 aFklfDkdgdGkidae 20  
                  a k +D ++dG +d  
  KOO22777.1 2127 ASKSIDLNKDGMVDSM 2142
                  56889********975 PP

  == domain 2  score: 7.1 bits;  conditional E-value: 0.0029
   EF-hand_6    2 lreaFklfDkdgdGkidaeElrkalrkal 30  
                  l ++F+++D +g G +  + lr +l+ ++
  KOO22777.1 2653 LSRVFQMYDAEGRGALGEQRLRTILS-DM 2680
                  5589*********************9.55 PP

  == domain 3  score: 2.6 bits;  conditional E-value: 0.084
   EF-hand_6    3 reaFklfDkdgdGkidaeElrkalr 27  
                  +++F +f ++++G ++  El + l+
  KOO22777.1 2904 HDIFFAFNQTRNGLLSCGELGAGLT 2928
                  689*****************99987 PP

  == domain 4  score: 2.3 bits;  conditional E-value: 0.1
   EF-hand_6    2 lreaFklfDkdgdGkidaeElr 23  
                  l ++ k +Dkd dG ++ eE+ 
  KOO22777.1 2939 LIALLKGLDKDTDGLLSLEEWS 2960
                  66778899***********975 PP

>> EF-hand_5  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.3   0.0      0.28   5.5e+02      13      22 ..    1092    1101 ..    1092    1105 .. 0.94
   2 !    5.9   0.2    0.0048       9.6       8      20 ..    2131    2143 ..    2129    2143 .. 0.89
   3 !    5.9   0.1    0.0049       9.8       8      23 ..    2946    2961 ..    2939    2963 .. 0.84

  Alignments for each domain:
  == domain 1  score: 0.3 bits;  conditional E-value: 0.28
                  SSCE-HHHHH CS
   EF-hand_5   13 DGkIskeELk 22  
                  DG +s++EL+
  KOO22777.1 1092 DGALSPDELQ 1101
                  9********8 PP

  == domain 2  score: 5.9 bits;  conditional E-value: 0.0048
                  H-SS-SSCE-HHH CS
   EF-hand_5    8 iDlNgDGkIskeE 20  
                  iDlN+DG ++  E
  KOO22777.1 2131 IDLNKDGMVDSME 2143
                  9********9887 PP

  == domain 3  score: 5.9 bits;  conditional E-value: 0.0049
                  H-SS-SSCE-HHHHHH CS
   EF-hand_5    8 iDlNgDGkIskeELkt 23  
                  +D++ DG +s eE+ +
  KOO22777.1 2946 LDKDTDGLLSLEEWSA 2961
                  8*************75 PP

>> EF-hand_1  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.6   0.1      0.12   2.5e+02       7      19 ..    2129    2141 ..    2124    2143 .. 0.80
   2 ?    0.8   0.0      0.22   4.3e+02       2      26 ..    2653    2677 ..    2652    2680 .. 0.77
   3 ?   -1.8   0.0       1.5   3.1e+03       3      26 ..    2904    2927 ..    2903    2928 .. 0.86
   4 !    7.5   0.0    0.0016       3.2       5      25 ..    2942    2962 ..    2938    2966 .. 0.81

  Alignments for each domain:
  == domain 1  score: 1.6 bits;  conditional E-value: 0.12
                  HHHTTTSSSEEEH CS
   EF-hand_1    7 refDkDgdGkIdf 19  
                  + +D ++dG +d 
  KOO22777.1 2129 KSIDLNKDGMVDS 2141
                  679*******996 PP

  == domain 2  score: 0.8 bits;  conditional E-value: 0.22
                  HHHHHHHHTTTSSSEEEHHHHHHHH CS
   EF-hand_1    2 lkeiFrefDkDgdGkIdfeEfkell 26  
                  l ++F+++D  g G +  + ++++l
  KOO22777.1 2653 LSRVFQMYDAEGRGALGEQRLRTIL 2677
                  5689********9988777666555 PP

  == domain 3  score: -1.8 bits;  conditional E-value: 1.5
                  HHHHHHHTTTSSSEEEHHHHHHHH CS
   EF-hand_1    3 keiFrefDkDgdGkIdfeEfkell 26  
                   +iF  f + ++G ++  E+ + l
  KOO22777.1 2904 HDIFFAFNQTRNGLLSCGELGAGL 2927
                  6899999999*********98876 PP

  == domain 4  score: 7.5 bits;  conditional E-value: 0.0016
                  HHHHHTTTSSSEEEHHHHHHH CS
   EF-hand_1    5 iFrefDkDgdGkIdfeEfkel 25  
                  + + +DkD dG +++eE+ + 
  KOO22777.1 2942 LLKGLDKDTDGLLSLEEWSAG 2962
                  56779************9876 PP

>> EF-hand_8  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.5   0.2      0.57   1.1e+03      35      47 ..    2131    2143 ..    2129    2143 .. 0.90
   2 ?   -1.6   0.0       1.3   2.5e+03      28      47 ..    2903    2922 ..    2902    2928 .. 0.90
   3 ?    9.7   0.0   0.00038      0.75      17      47 ..    2930    2958 ..    2914    2963 .. 0.90

  Alignments for each domain:
  == domain 1  score: -0.5 bits;  conditional E-value: 0.57
   EF-hand_8   35 fDtdgdGkisfeE 47  
                  +D+++dG+++ +E
  KOO22777.1 2131 IDLNKDGMVDSME 2143
                  7********9887 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 1.3
   EF-hand_8   28 vdilfrefDtdgdGkisfeE 47  
                  v+++f +f + ++G +s+ E
  KOO22777.1 2903 VHDIFFAFNQTRNGLLSCGE 2922
                  689*************9866 PP

  == domain 3  score: 9.7 bits;  conditional E-value: 0.00038
   EF-hand_8   17 lglkkglseeevdilfrefDtdgdGkisfeE 47  
                  lgl+  ++e+e+ +l++ +D d dG +s+eE
  KOO22777.1 2930 LGLP--FGESELIALLKGLDKDTDGLLSLEE 2958
                  7999..************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (3419 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       622  (0.0346924); expected 358.6 (0.02)
Passed bias filter:                      509  (0.0283898); expected 358.6 (0.02)
Passed Vit filter:                        50  (0.00278878); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 1.46u 0.33s 00:00:01.79 Elapsed: 00:00:00.58
# Mc/sec: 17616.00
//
Query:       KOO22778.1  [L=415]
Description: d-lactate dehydrogenase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.2e-52  177.8   0.1    1.8e-52  177.3   0.1    1.3  1  2-Hacid_dh_C   D-isomer specific 2-hydroxyacid dehydrogenase,
    1.7e-24   86.0   0.2    2.4e-24   85.5   0.2    1.2  1  2-Hacid_dh     D-isomer specific 2-hydroxyacid dehydrogenase,
    2.3e-06   27.8   0.2      6e-06   26.5   0.2    1.7  1  NAD_binding_2  NAD binding domain of 6-phosphogluconate dehyd
    0.00024   20.7   0.0    0.00066   19.3   0.0    1.7  1  IlvN           Acetohydroxy acid isomeroreductase, NADPH-bind
     0.0071   16.8   0.2      0.031   14.7   0.1    2.1  2  NAD_binding_7  Putative NAD(P)-binding
  ------ inclusion threshold ------
      0.014   15.9   2.2      0.034   14.7   0.1    2.5  2  F420_oxidored  NADP oxidoreductase coenzyme F420-dependent
      0.015   15.4   0.1      0.034   14.2   0.1    1.6  1  Shikimate_DH   Shikimate / quinate 5-dehydrogenase
      0.025   14.4   1.0       0.23   11.3   0.1    2.4  2  Rossmann-like  Rossmann-like domain
      0.081   12.1   0.0       0.15   11.2   0.0    1.4  1  Aminotran_1_2  Aminotransferase class I and II
      0.096   13.3   1.6       0.42   11.2   1.6    2.1  1  Pyr_redox      Pyridine nucleotide-disulphide oxidoreductase
       0.11   12.4   0.9       0.39   10.6   0.0    2.2  2  3HCDH_N        3-hydroxyacyl-CoA dehydrogenase, NAD binding d
       0.29   11.4   1.7       0.54   10.6   1.7    1.4  1  Med25_SD1      Mediator complex subunit 25 synapsin 1


Domain annotation for each model (and alignments):
>> 2-Hacid_dh_C  D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  177.3   0.1   1.2e-55   1.8e-52       1     178 []     149     336 ..     149     336 .. 0.95

  Alignments for each domain:
  == domain 1  score: 177.3 bits;  conditional E-value: 1.2e-55
                   HHHHHHHHTTHHHHHHHHHTTCCHTTCCGSBS-GTTSEEEEES-SHHHHHHHHHHHHTT-EEEEESSSHHHHHCHHHHTCEECSHHHHHHH-SEEEE CS
  2-Hacid_dh_C   1 lalllallrrlaeadeevregewksekallgkelsgktvGiiGlGrIGqavakrlkafgmkviaydrskkkeeeeeelgvelvsleellaesDivsl 97 
                   +al++ l+r++++a+ + r+g++ s + l+g +++g+tvGiiG+G+IG  +a+++ +fg+kvia +rs +k  e +++gve+v+l+el++++Di+sl
    KOO22778.1 149 VALCMTLNRKIHKAYLRNRDGNF-SLRGLTGFDMHGRTVGIIGTGNIGVIAANIFLGFGCKVIAQSRSVNK--ELADKGVEYVTLDELCKRCDIISL 242
                   5899*******************.999*****************************************884..47999******************* PP

                   -S--STTTTTSBSHHHHHCSTTTEEEEESS-GGGB-HHHHHHHHHTTSCCEEEES--SSS...........SSGTC..HHHHHSTTEEE-SS-T CS
  2-Hacid_dh_C  98 hlpltpetrhlinaeelakmkkgailiNtaRGglvdeeaLleaLksgkiagaalDvfeee...........plped..spllelpnviltPHia 178
                   h+p+t+et+h in++++a+mkkg+++iNt+RGgl+d++a ++ Lk+++i++ +lDv+eee            l++d  ++l++ pnvi+t H a
    KOO22778.1 243 HAPMTKETHHCINEARIALMKKGVMIINTSRGGLLDTKAAIAGLKNKTIGALGLDVYEEEsglffhdhtgeVLEDDvfQQLVNYPNVIVTGHQA 336
                   ****************************************************************99999964443355699***********87 PP

>> 2-Hacid_dh  D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   85.5   0.2   1.6e-27   2.4e-24      21     127 ..      64     362 ..      32     369 .. 0.94

  Alignments for each domain:
  == domain 1  score: 85.5 bits;  conditional E-value: 1.6e-27
                 EEEEESCSSHHHCHHHHTTESEEEE-TTS-BSHHHHHHH...TT--EEEESSSSCTTB-HHHHHHTT-EEEE-TTTTHHHHHHHH.............. CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.............. RF
  2-Hacid_dh  21 evevkdellteellekakdadalivrsntkvtaevleal...pkLkviaragvGvDnvDldaakerGilVtnvpgystesvAElt.............. 102
                  +++ ++ l+ ++++ a+d+ a++v++n+ v++evl+ l    ++++i ++++G++nvDl+aa+ + i V++vp+ys+ +vAE++              
  KOO22778.1  64 AMRYIEAELNPQTVKLAQDCAAVCVFVNDGVSKEVLDWLgryTSCRLILLRCAGFNNVDLAAAAVNKISVARVPAYSPYAVAEHAvalcmtlnrkihka 162
                 456777889999***************************999********************************************************* PP

                 ................................................................................................... CS
                 ................................................................................................... RF
  2-Hacid_dh 103 ................................................................................................... 102
                                                                                                                    
  KOO22778.1 163 ylrnrdgnfslrgltgfdmhgrtvgiigtgnigviaaniflgfgckviaqsrsvnkeladkgveyvtldelckrcdiislhapmtkethhcinearial 261
                 *************************************************************************************************** PP

                 ...........................................................................T-BHHHHHHHHHHHHHHHHHHHTT CS
                 ...........................................................................xxxxxxxxxxxxxxxxxxxxxxxx RF
  2-Hacid_dh 103 ...........................................................................aaTeeaqeniaeeaaenlvaflkg 126
                                                                                            ++Te+a++nia+ ++ n+++ l+ 
  KOO22778.1 262 mkkgvmiintsrgglldtkaaiaglknktigalgldvyeeesglffhdhtgevleddvfqqlvnypnvivtghqaFLTEDALRNIADATLFNMREHLAK 360
                 **********************************************************************************************99987 PP

                 .C CS
                 .x RF
  2-Hacid_dh 127 .e 127
                  e
  KOO22778.1 361 aE 362
                 44 PP

>> NAD_binding_2  NAD binding domain of 6-phosphogluconate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.5   0.2     4e-09     6e-06       1     114 [.     185     296 ..     185     304 .. 0.89

  Alignments for each domain:
  == domain 1  score: 26.5 bits;  conditional E-value: 4e-09
                    EEEEE--SHHHHHHHHHHHHTT-EEEEE-SSHHHHHHHHHTTEEE-SSHHHHHHHCSEEEE-SSSHHHHHHHHHS.HCCC--TT-EEEE-S---HH CS
  NAD_binding_2   1 kigfiGlGvMGsnmalnllkagykvavynrtkekveelvaegakaaesieelvasldvvitmvkagkavdevieg.llealkkgdilidgstsspe 95 
                    ++g+iG+G++G   a+ +l  g+kv++  r+    +el+++g++   ++ el++++d++ +  + +k++ ++i++  ++ +kkg ++i++s     
     KOO22778.1 185 TVGIIGTGNIGVIAANIFLGFGCKVIAQSRS--VNKELADKGVEY-VTLDELCKRCDIISLHAPMTKETHHCINEaRIALMKKGVMIINTSRGGLL 277
                    58*********99888889888888887766..778999999865.57899************************87899**************** PP

                    HHHHHHHHHHHTT-EEEEE CS
  NAD_binding_2  96 dtrelakelkekglkflda 114
                    dt+   + lk+k +  l+ 
     KOO22778.1 278 DTKAAIAGLKNKTIGALGL 296
                    ************9998886 PP

>> IlvN  Acetohydroxy acid isomeroreductase, NADPH-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.3   0.0   4.4e-07   0.00066       2      89 ..     181     266 ..     180     274 .. 0.77

  Alignments for each domain:
  == domain 1  score: 19.3 bits;  conditional E-value: 4.4e-07
                 HHTS-EEEES-SHHHHHHHHHHHHTT--EEEEE-TT-HHHHHHHHTT-EEEEHHHHHHT-SEEEE-S-HHHH..HHHHHHHTGGG--TT- CS
        IlvN   2 lkgkkiaviGyGsqGhaqalnlrdsgldvvvglregsksvkkAkeegfevltvaeavkkadvvmiliPDelq..kevyeeeiepnlkegk 89 
                 ++g+++ +iG G+ G   a+ +   g++v+   r+ +   k+  ++g+e +t++e++k+ d++ + +P + +  + + e++i   +k+g 
  KOO22778.1 181 MHGRTVGIIGTGNIGVIAANIFLGFGCKVIAQSRSVN---KELADKGVEYVTLDELCKRCDIISLHAPMTKEthHCINEARI-ALMKKGV 266
                 6799*************************98766655...566789*********************965540044444444.3455554 PP

>> NAD_binding_7  Putative NAD(P)-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.0       2.2   3.3e+03      31      38 ..      84      91 ..      28     160 .. 0.63
   2 !   14.7   0.1   2.1e-05     0.031       3      82 ..     179     257 ..     178     274 .. 0.73

  Alignments for each domain:
  == domain 1  score: -1.5 bits;  conditional E-value: 2.2
  NAD_binding_7 31 akvtvvap 38
                   a v v  +
     KOO22778.1 84 AAVCVFVN 91
                   22222222 PP

  == domain 2  score: 14.7 bits;  conditional E-value: 2.1e-05
  NAD_binding_7   3 ldlkgkkvlvvGgGevAarkvrklleagakvtvvapevkeele.elvklaeeelekdlegadlviaatddrelneriaeaa 82 
                    +d++g++v ++G G+++   ++ +l +g+kv+  +  v++el  +   ++  +l++ +++ d++    + +++ ++  ++a
     KOO22778.1 179 FDMHGRTVGIIGTGNIGVIAANIFLGFGCKVIAQSRSVNKELAdKG--VEYVTLDELCKRCDIISLHAPMTKETHHCINEA 257
                    5899***************************999999755444221..333334566777777766666666666665555 PP

>> F420_oxidored  NADP oxidoreductase coenzyme F420-dependent
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.7   0.1   2.3e-05     0.034       1      70 [.     185     245 ..     185     272 .. 0.80
   2 ?   -0.2   0.2         1   1.5e+03      11      35 ..     361     382 ..     358     406 .. 0.72

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 2.3e-05
                    EEEEETTSHHHHHHHHHHHHTTS-GGCEEEEEESSCCCHHHHHHHHC-EEECECHHHHHHH-SEEEE-S- CS
  F420_oxidored   1 kigiiGaGnmgealasgllaagaqpheivvansrnpekaeelaeelgvkvtavdneeaaeeadvvvlavk 70 
                    ++giiG+Gn+g   a+ +l  g    +++ a sr+ +  +ela++ g  v+ v+  e+++++d++ l  +
     KOO22778.1 185 TVGIIGTGNIGVIAANIFLGFG---CKVI-AQSRSVN--KELADK-G--VEYVTLDELCKRCDIISLHAP 245
                    59********************...****.9888888..467766.4..555569999999999876555 PP

  == domain 2  score: -0.2 bits;  conditional E-value: 1
                    HHHHHHHHHHTTS-GGCEEEEEESS CS
  F420_oxidored  11 gealasgllaagaqpheivvansrn 35 
                    +e l++g++aa+   he+  a s +
     KOO22778.1 361 AEKLTNGVVAAD---HEVAAAKSAK 382
                    678899999999...9999553333 PP

>> Shikimate_DH  Shikimate / quinate 5-dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   0.1   2.3e-05     0.034       9      93 ..     180     257 ..     174     272 .. 0.72

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 2.3e-05
                   ..TT-EEEEES-SHHHHHHHHHHHCCT-CEEEEEESSHHHHHHHHHHHT.ET-EEEEGCGHHHHHHT-SEEEE-SSSSS-SB-HH CS
  Shikimate_DH   9 slkekkvlliGaGemaelvakhLlakgvkkvvvaNRtlerakelaeelkgeeiealkleelkellaeadvvisataseepileke 93 
                   ++++++v +iG+G+++  +a+ +l  g+k v+   R+++  kela++     +e+++l+el ++ + + +    t+ +++ ++++
    KOO22778.1 180 DMHGRTVGIIGTGNIGVIAANIFLGFGCK-VIAQSRSVN--KELADKG----VEYVTLDELCKRCDIISLHAPMTKETHHCINEA 257
                   58899************************.555566655..5788876....468999988765544444444555555555555 PP

>> Rossmann-like  Rossmann-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.1   0.00015      0.23      12     104 ..     185     272 ..     180     284 .. 0.86
   2 ?    1.0   0.1      0.24   3.5e+02      74     102 ..     344     372 ..     321     395 .. 0.67

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00015
  Rossmann-like  12 svGiisaGrvGtalgaaleraghvvvgisaisaasreraerrlPdvpvlevedvaaraellllavPdaelpglvkglaatgavraGtivahts 104
                    +vGii++G++G++ ++ + + g +v++ s   ++ +e+a++   +v+ ++++++ +r++++ l  P ++ +    + a    +++G +++ ts
     KOO22778.1 185 TVGIIGTGNIGVIAANIFLGFGCKVIAQS--RSVNKELADK---GVEYVTLDELCKRCDIISLHAPMTKETHHCINEARIALMKKGVMIINTS 272
                    69****************99999887654..4567888887...67899999**************999888888888888999999999998 PP

  == domain 2  score: 1.0 bits;  conditional E-value: 0.24
  Rossmann-like  74 lavPdaelpglvkglaatgavraGtivah 102
                      + da l ++ + la+++ + +G + a 
     KOO22778.1 344 RNIADATLFNMREHLAKAEKLTNGVVAAD 372
                    45667777777777777777777766553 PP

>> Aminotran_1_2  Aminotransferase class I and II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0    0.0001      0.15     293     345 ..     292     344 ..     277     358 .. 0.88

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.0001
                    HHSTEEEECCSCSSEEEEEETHHCHHHHHHHHHHTCTEEEEEGGGGTSTTEEE CS
  Aminotran_1_2 293 aelglkvlasqsgmflltdlsaetakelskkLleevgvyvtpgtsftvpgrlR 345
                     +lgl+v++++sg+f   ++ +  +++++++L+++ +v+vt  + f ++  lR
     KOO22778.1 292 GALGLDVYEEESGLFFHDHTGEVLEDDVFQQLVNYPNVIVTGHQAFLTEDALR 344
                    445*******************************************9999888 PP

>> Pyr_redox  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   1.6   0.00028      0.42       2      26 ..     186     210 ..     185     236 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00028
                 EEEECSSHHHHHHHHHHHHTTSEEE CS
   Pyr_redox   2 vvvvGgGyiglElAgalaelgkkVt 26 
                 v ++G G+ig+ +A+++  +g+kV 
  KOO22778.1 186 VGIIGTGNIGVIAANIFLGFGCKVI 210
                 779*******************996 PP

>> 3HCDH_N  3-hydroxyacyl-CoA dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   0.2      0.68     1e+03      40      88 ..      10      56 ..       4      61 .. 0.70
   2 ?   10.6   0.0   0.00026      0.39       1      42 [.     185     228 ..     185     254 .. 0.83

  Alignments for each domain:
  == domain 1  score: -0.6 bits;  conditional E-value: 0.68
                HHHHHHHHCCTTTTSS-HHHHCCCHHCEEEES-HHHHH.C-SEEEE-S-S CS
     3HCDH_N 40 ekieksleklvekgklkeeeveaalarisfttdleeav.dadlviEavvE 88
                ek++++++k++e+g  +   +e+ +  +  + ++eea+ +a l  E ++E
  KOO22778.1 10 EKLREEVAKAKEHGDST---TEQPIIAVFSAREYEEAAfEAALAAEKAAE 56
                55555555555555544...666677777778888888899999998887 PP

  == domain 2  score: 10.6 bits;  conditional E-value: 0.00026
                 EEEEE--SCCHHHHHHHHHHTT-EEEEE-S..-HHHHHHHHHHH CS
     3HCDH_N   1 kvaviGaGtmGagiaavfasagleVvlvdi..seealekaleki 42 
                 +v++iG+G +G   a++f+  g++V    +  ++e ++k+ e +
  KOO22778.1 185 TVGIIGTGNIGVIAANIFLGFGCKVIAQSRsvNKELADKGVEYV 228
                 69***********************9877644666666666655 PP

>> Med25_SD1  Mediator complex subunit 25 synapsin 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   1.7   0.00036      0.54      48      92 ..     359     400 ..     347     408 .. 0.84

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00036
   Med25_SD1  48 aqpgtLsaAqaAAqsAvEAAknqKagLgtRFsplknlqqaapgvG 92 
                 a+  +L+   +AA   v AAk+ Ka    RF +lk ++++  g G
  KOO22778.1 359 AKAEKLTNGVVAADHEVAAAKSAKAT--ARFGALKRIAAMGGG-G 400
                 677899*******************8..9*******9966554.3 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (415 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       752  (0.0419432); expected 358.6 (0.02)
Passed bias filter:                      562  (0.0313459); expected 358.6 (0.02)
Passed Vit filter:                        50  (0.00278878); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.53u 0.27s 00:00:00.80 Elapsed: 00:00:00.43
# Mc/sec: 2907.21
//
Query:       KOO22779.1  [L=940]
Description: muscular protein 20 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      3e-16   59.6   0.0    5.7e-16   58.6   0.0    1.4  1  CH        Calponin homology (CH) domain
  ------ inclusion threshold ------
      0.012   15.9   0.0      0.021   15.0   0.0    1.3  1  CDC24     CDC24 Calponin


Domain annotation for each model (and alignments):
>> CH  Calponin homology (CH) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.6   0.0   6.4e-20   5.7e-16      10     108 ..     771     876 ..     764     877 .. 0.87

  Alignments for each domain:
  == domain 1  score: 58.6 bits;  conditional E-value: 6.4e-20
                 HHHHHHTTSTTSSTT......SCHHHHHTTSHHHHHHHHHHSTTTSSGGGSTTTHHHHHHHHHHHHHHHHHHTTCHTTSS.-HHHHHTTSHH.HHHHHH CS
          CH  10 Winshleeagpkvkv......edfeedlrDGvlLckLlnklapglvdkkklnksefkkleNinlaldvaekklgvpkvli.eaedlvegknk.svltll 100
                 W+ ++l+ a p +          ++ +lr+G lLc+L+nkl+pg+++ ++ ++ +fk++eNi++ +++++ +lgvp  ++  ++dl+egk+   v++ +
  KOO22779.1 771 WMAEVLGIAPPPEAAdveghhALLHAWLRSGELLCELINKLQPGTISRVSSSAMPFKQMENISNYIEACA-ALGVPNQDCfRSVDLFEGKDLrAVVRNI 868
                 66666666544444466666567889*************************999*************999.*********************9****** PP

                 HHHHHHHH CS
          CH 101 aqLfrafq 108
                 ++L r++q
  KOO22779.1 869 HSLGRVAQ 876
                 ****9987 PP

>> CDC24  CDC24 Calponin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.0   0.0   2.4e-06     0.021       6      82 ..     794     865 ..     791     872 .. 0.80

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 2.4e-06
       CDC24   6 lwkllrqGspLlalfNalkpeeklevdevksddlkvcKksvydFllackkeLgfedeelftisdlfsedttdlvkvl 82 
                 l   lr G  L+ l N l+p +  +v   +s+   +  + + ++++ac   Lg++++++f   dlf+   +dl  v+
  KOO22779.1 794 LHAWLRSGELLCELINKLQPGTISRV--SSSAMPFKQMENISNYIEACA-ALGVPNQDCFRSVDLFE--GKDLRAVV 865
                 66789*****************9999..555555556678999*****6.7**************96..34555444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (940 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1820  (0.101512); expected 358.6 (0.02)
Passed bias filter:                      418  (0.0233142); expected 358.6 (0.02)
Passed Vit filter:                        76  (0.00423894); expected 17.9 (0.001)
Passed Fwd filter:                        16  (0.000892409); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.98u 0.33s 00:00:01.31 Elapsed: 00:00:00.50
# Mc/sec: 5677.24
//
Query:       KOO22780.1  [L=108]
Description: hypothetical protein Ctob_001373 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (108 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       191  (0.0106531); expected 358.6 (0.02)
Passed bias filter:                      170  (0.00948185); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.27s 00:00:00.61 Elapsed: 00:00:00.41
# Mc/sec: 798.23
//
Query:       KOO22781.1  [L=401]
Description: hypothetical protein Ctob_001372 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    8.1e-62  209.2  21.6    9.8e-62  209.0  21.6    1.0  1  Aa_trans      Transmembrane amino acid transporter protein
    2.1e-09   36.9  16.9    2.5e-07   30.1  12.1    2.2  2  Trp_Tyr_perm  Tryptophan/tyrosine permease family


Domain annotation for each model (and alignments):
>> Aa_trans  Transmembrane amino acid transporter protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  209.0  21.6   1.1e-65   9.8e-62       2     375 ..       9     368 ..       8     390 .. 0.89

  Alignments for each domain:
  == domain 1  score: 209.0 bits;  conditional E-value: 1.1e-65
    Aa_trans   2 tssalsavlnlikaivGaGvLaLPyAfkqlGlivGlillllvallslytlllLvkcsktlasgkrnksYgdlgyrllGpkgkliidlailvqlfGvgvs 100
                 ++sals+vlnl+++i+GaG+LaLP+Afk++Gl+vG+   +++++++ly+++lL++ +k+     + +sY+dl+  +lG+ g ++ +++ +++  G +++
  KOO22781.1   9 GASALSGVLNLLNSIIGAGILALPFAFKSAGLLVGIGYQIVFGFMTLYGIVLLLESLKFA----SVRSYEDLALCALGRAGWYAYNFSSIFSGYGSCTG 103
                 589*******************************************************84....8********************************** PP

    Aa_trans 101 yliligdllpaifesffdtlllsnvyfilisaliiipLslipnlskLsylSllalvsslyyivilvlvvaelvklelkgvseetvkkasklkglflaig 199
                 yl++igd lp +++ + +  l +   + ++s++ i+pL+ +p++s+L+y+S la+ + +++ +++++  +  + +  +     ++    ++  +++ ++
  KOO22781.1 104 YLVIIGDILPGLLQEL-GYVLSRESLMCAVSVVLIFPLCALPEFSALQYASGLAVAIYVCF-TVAIVQLYFQGNGGSEPLDPPPSMFREDFGAFISVAP 200
                 **************94.44566778888999999**********************99996.5555555666666666666666667888889999*** PP

    Aa_trans 200 iivFAftghavlleiqnelkdpskfkkmtkvlllsiilatvlyilvGlvGYltFGnevkgnillnlpkss.ilivivnlllvlhlilsfplqlhplrqv 297
                   +FA+++ ++l++i++el        mt ++ ++  +a v+y +vG + Yl FG++++g +llnl+        i ++ +++ + +++p + +++r++
  KOO22781.1 201 LSAFAYQCLTTLFPIYQELAVATP-ARMTLISAIALGTAGVIYSSVGAAAYLHFGEATQGDVLLNLESIGsPTMRIMRFSFGISICFTYPTMQFACRRS 298
                 *******************99555.5699*************************************866677999************************ PP

    Aa_trans 298 venllikkeavagasekeapkskllrlvirlllvvityliAlsvpslakvlslvGatsstplsfilPalfhlklikte 375
                 +++ll++       +e ++p   l+ l +++l+v +t+ +Al+ ++ + v++  Ga++st+l filP+ + l l   +
  KOO22781.1 299 LDQLLFHS------KEGNTP--YLRLLALTVLIVSSTLWLALYSQKVEVVFGYAGAIASTSLLFILPPSIALSLHPHK 368
                 ******97......444444..4688899***************************************9999887655 PP

>> Trp_Tyr_perm  Tryptophan/tyrosine permease family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.1  12.1   2.8e-11   2.5e-07       4     165 ..      11     171 ..       8     176 .. 0.92
   2 !    9.4   0.1   5.4e-05      0.49     317     371 ..     318     373 ..     298     389 .. 0.77

  Alignments for each domain:
  == domain 1  score: 30.1 bits;  conditional E-value: 2.8e-11
  Trp_Tyr_perm   4 sllggvlliagtviGaGmlalPvatagagfipsllllilswvlmlasgllllEvllaakeeasfttlakkllGkkgniivalvllfllyiLlvAyis 100
                   s+l+gvl +  ++iGaG+lalP a   ag ++ +   i+  ++ l+ ++lllE l +  +  s+++la   lG+ g +  +++ +f  y     y+ 
    KOO22781.1  11 SALSGVLNLLNSIIGAGILALPFAFKSAGLLVGIGYQIVFGFMTLYGIVLLLESL-KFASVRSYEDLALCALGRAGWYAYNFSSIFSGYGSCTGYLV 106
                   789999999********************************************76.5566789********************************** PP

  Trp_Tyr_perm 101 ggGsilselleeasgialsarlavliftlvlgalvvlstkavdrinrvllflklvafvlllalll 165
                    +G+il  ll+e   + + + l++++ ++++ +l  l  + + +  ++l ++  v f+++++ l 
    KOO22781.1 107 IIGDILPGLLQELGYVLSRESLMCAVSVVLIFPLCALPEFSALQYASGLAVAIYVCFTVAIVQLY 171
                   ************998888888899998888888888888999999*************9988775 PP

  == domain 2  score: 9.4 bits;  conditional E-value: 5.4e-05
  Trp_Tyr_perm 317 lglvtflpPlvlalffPegflkalgyAG.laatilavilPallawkarkkkknapy 371
                      v  ++  ++  ++ + +    gyAG +a t l+ ilP+++a+    +k+ + y
    KOO22781.1 318 ALTVLIVSSTLWLALYSQKVEVVFGYAGaIASTSLLFILPPSIALSLHPHKPWYNY 373
                   334445667899999*****************************998888876665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (401 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       603  (0.0336327); expected 358.6 (0.02)
Passed bias filter:                      285  (0.015896); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.47u 0.28s 00:00:00.75 Elapsed: 00:00:00.43
# Mc/sec: 2777.99
//
Query:       KOO22782.1  [L=584]
Description: hypothetical protein Ctob_001371 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
      0.002   18.3  25.1        3.6    7.8   0.3    5.2  5  Cnn_1N        Centrosomin N-terminal motif 1
  ------ inclusion threshold ------
      0.043   14.5   0.0       0.17   12.5   0.0    2.1  1  SnoaL_2       SnoaL-like domain
       0.58    9.9  34.7          2    8.2   9.5    2.7  2  KASH_CCD      Coiled-coil region of CCDC155 or KASH
       0.69    8.7  40.9      0.044   12.7  10.9    3.2  3  Spc7          Spc7 kinetochore protein
        1.2    8.3  14.6       0.64    9.2   1.3    2.7  3  TMPIT         TMPIT-like protein
        2.1    8.7   5.6       0.49   10.7   0.2    2.6  2  DUF4878       Domain of unknown function (DUF4878)
        2.6    8.1  15.7        4.3    7.4   1.9    4.2  4  DUF1664       Protein of unknown function (DUF1664)
        4.6    7.1  15.1        6.3    6.7   0.6    4.0  4  Sec8_exocyst  Sec8 exocyst complex component specific domain
          5    5.6  17.5       0.67    8.5   6.7    2.3  2  FapA          Flagellar Assembly Protein A


Domain annotation for each model (and alignments):
>> Cnn_1N  Centrosomin N-terminal motif 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.4   0.1     0.005       9.9      25      64 ..     114     153 ..     110     161 .. 0.89
   2 ?    1.4   0.4      0.19   3.7e+02      37      64 ..     181     208 ..     154     213 .. 0.73
   3 !    6.8   6.5    0.0036       7.3       7      69 ..     187     256 ..     181     259 .. 0.90
   4 !    7.8   0.3    0.0018       3.6      34      72 ..     324     368 ..     305     369 .. 0.77
   5 !    7.4   1.5    0.0025       4.9      29      71 ..     375     419 ..     368     421 .. 0.86

  Alignments for each domain:
  == domain 1  score: 6.4 bits;  conditional E-value: 0.005
      Cnn_1N  25 fLeerleklseeqkeellkenielkveveslqkelkekkk 64 
                  L ++ +k+++  +e++l e++  ++e+ ++++el+++++
  KOO22782.1 114 VLVKKKKKIGDVMREDCLPELVAAQTEMCQMRDELEAYRR 153
                 56667788888999***********************986 PP

  == domain 2  score: 1.4 bits;  conditional E-value: 0.19
      Cnn_1N  37 qkeellkenielkveveslqkelkekkk 64 
                 ++ e  + + +l +e+++l+ +l++ kk
  KOO22782.1 181 SSAEHFEARSKLSDEIAELRLQLEAEKK 208
                 5556666778888888888888888777 PP

  == domain 3  score: 6.8 bits;  conditional E-value: 0.0036
      Cnn_1N   7 eqidkLkKENFdLKLriyfLeerleklse.......eqkeellkenielkveveslqkelkekkkllrea 69 
                 e  +kL+ E   L+L++   ++r   l++       e++++l k++ e k+e+e   + + +k+++l + 
  KOO22782.1 187 EARSKLSDEIAELRLQLEAEKKRSASLPSpgaspeeESVKQLKKSLNEAKEELEAAHRAIRAKEESLAQK 256
                 566899999999999999999998888889999999*******************************985 PP

  == domain 4  score: 7.8 bits;  conditional E-value: 0.0018
      Cnn_1N  34 se......eqkeellkenielkveveslqkelkekkkllreaeka 72 
                 +e       ++  l++en +lk + +s    ++ ++k+l++a+++
  KOO22782.1 324 EEmlegapVERARLVDENAKLKRDAASALAAVEPLRKSLTHANSE 368
                 2244444489999***************************99876 PP

  == domain 5  score: 7.4 bits;  conditional E-value: 0.0025
      Cnn_1N  29 rleklse..eqkeellkenielkveveslqkelkekkkllreaek 71 
                 rl++l++  e  e++ + n el++++e+l   +  ++++l e+++
  KOO22782.1 375 RLQQLHStaERLESTRRVNAELRTTNEELLEHVRFLTRSLSESQS 419
                 677777777899**************************9999876 PP

>> SnoaL_2  SnoaL-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   8.5e-05      0.17       1      55 [.      35      89 ..      35     114 .. 0.83

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 8.5e-05
                HHHHHHHHHTTCHHHHHHTEEEEEEEEETTSEEESHHHHHHHHHHHHHHEEEEEE CS
     SnoaL_2  1 vraflaalnagdldalaalfapdvvwedpggelrGreairaffralfaafpdlrf 55
                v+ f+aa ++gd+ a+a l+++d+ +  + ++++  +a+++ +++     + ++ 
  KOO22782.1 35 VQSFVAATEKGDAVAAAKLCTEDFLYKTHSATTESLAAAQDRLKTKVPVPSKVTS 89
                789**************************99999999999988877654444444 PP

>> KASH_CCD  Coiled-coil region of CCDC155 or KASH
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6  17.3     0.003       6.1      20     170 ..     168     326 ..     160     330 .. 0.77
   2 ?    8.2   9.5   0.00098         2      19     122 ..     336     446 ..     327     464 .. 0.75

  Alignments for each domain:
  == domain 1  score: 6.6 bits;  conditional E-value: 0.003
    KASH_CCD  20 LaeenskLkkavetae...etnakLteeieeLkkklkstQqalqkakl..leeEleelkalvkeleEkrarlkaqnkqlekenqsLiakie.sLqe..e 110
                 L +  ++L + + ++    e+ +kL++ei eL+ +l    + + +  +   + E e +k+l k+l+E +++l+a  + +   ++sL +k e sLq   e
  KOO22782.1 168 LRDLRAQLAAEIASSAehfEARSKLSDEIAELRLQLEAEKKRSASLPSpgASPEEESVKQLKKSLNEAKEELEAAHRAIRAKEESLAQKKEgSLQAakE 266
                 55555555555554431225789*************9998877766553378999************************99999998876548986225 PP

    KASH_CCD 111 nikllaekdelkkklkeLlkekaeLkk.qlheleellaekealleektkqieeLkltieEy 170
                    l a++ +l +k  eL+++   L++  ++ l  l +++ ++l+ + +++ e  +++eE+
  KOO22782.1 267 HAELVAQHAALVTKGDELMRTV-RLQRlAAKALGMLYVQRLSSLKRQLRRMTERSQAVEEM 326
                 5667888889999999999988.55551566788899999999999999999999999886 PP

  == domain 2  score: 8.2 bits;  conditional E-value: 0.00098
    KASH_CCD  19 kLaeenskLkk....avetaeetnakLteeieeLkkklkstQqalqkaklleeE...leelkalvkeleEkrarlkaqnkqlekenqsLiakiesLqee 110
                 +L +en+kLk+    a+ ++e + + Lt  ++e++++++ +Qq+   a+ le     ++el+++ +el E+ + l    ++ +   + +++++ + q +
  KOO22782.1 336 RLVDENAKLKRdaasALAAVEPLRKSLTHANSEIRQQAMRLQQLHSTAERLESTrrvNAELRTTNEELLEHVRFLTRSLSESQSRADVIKVQLLDVQGN 434
                 8999999999744446889999*********************98888877754222788888888888887777666666666666666676677777 PP

    KASH_CCD 111 nikllaekdelk 122
                   ++la +d+ +
  KOO22782.1 435 HARVLARRDTER 446
                 777766666655 PP

>> Spc7  Spc7 kinetochore protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.4   5.7      0.03        60     185     264 ..     131     210 ..     102     213 .. 0.70
   2 ?    2.6  18.3     0.026        53     166     251 ..     186     275 ..     163     297 .. 0.78
   3 ?   12.7  10.9   2.2e-05     0.044     146     279 ..     304     432 ..     294     446 .. 0.88

  Alignments for each domain:
  == domain 1  score: 2.4 bits;  conditional E-value: 0.03
        Spc7 185 klqeaaeelesid.keeLeelreelaelkaeieekkkelaelqeqleeleekieelkeqkseleeeiaeaervleeckgws 264
                   +  a++ e ++ ++eLe++r+  +  +   e+ ++el +l++ql++  ++ +e  e +s+l +eiae +  le++k+ s
  KOO22782.1 131 LPELVAAQTEMCQmRDELEAYRRG-DPTSRRAEAAERELRDLRAQLAAEIASSAEHFEARSKLSDEIAELRLQLEAEKKRS 210
                 334466777778878888888764.44555566668899999999988888888888999999999999888888877765 PP

  == domain 2  score: 2.6 bits;  conditional E-value: 0.026
        Spc7 166 dellpeleeekaeleeeleklqeaaeeles....idkeeLeelreelaelkaeieekkkelaelqeqleeleekieelkeqkseleeeia 251
                  e+  +l+ e ael+ +le +++++++l s     ++e++++l+++l+e+k+e+e+  + +  ++e l++++e   +++++ +el ++ a
  KOO22782.1 186 FEARSKLSDEIAELRLQLEAEKKRSASLPSpgasPEEESVKQLKKSLNEAKEELEAAHRAIRAKEESLAQKKEGSLQAAKEHAELVAQHA 275
                 467788999999999999999999999988887556899999999999999999999999999999999988888777777777766654 PP

  == domain 3  score: 12.7 bits;  conditional E-value: 2.2e-05
        Spc7 146 enlegleedkelLekqeeeldellpeleeekaeleeeleklqeaaeelesidkeeLeelreelaelkaeieekkkelaelqeqleeleekieelkeqks 244
                 ++l++l+++ ++++++ + ++e+l+    e+a+l +e +kl++ a+    +  + +e lr++l+ +++ei+++  +l++l +  e+le++   ++++ +
  KOO22782.1 304 QRLSSLKRQLRRMTERSQAVEEMLEGAPVERARLVDENAKLKRDAA----SALAAVEPLRKSLTHANSEIRQQAMRLQQLHSTAERLESTR-RVNAELR 397
                 7899***************************************665....5899******************************9998876.8889999 PP

        Spc7 245 eleeeiaeaervleeckgwsesevsrlkeevkale 279
                 +++ee+ e+ r+l +  + s+s  + +k ++ +++
  KOO22782.1 398 TTNEELLEHVRFLTRSLSESQSRADVIKVQLLDVQ 432
                 99****99999999887777777776666666555 PP

>> TMPIT  TMPIT-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.8   3.5    0.0036       7.1       5      92 ..     162     249 ..     158     261 .. 0.83
   2 ?    0.9   0.7      0.11   2.2e+02       8      85 ..     233     323 ..     231     329 .. 0.51
   3 ?    9.2   1.3   0.00032      0.64       5      79 ..     335     411 ..     332     439 .. 0.74

  Alignments for each domain:
  == domain 1  score: 5.8 bits;  conditional E-value: 0.0036
       TMPIT   5 eelekefkeleetakeykqkleelsklqskcskeikkqkkrlkelksslkklkksvkeeeeeeveelkeelkerkkvlkevesllpkk 92 
                 e  e+e+++l+++    +++++e ++  sk+s ei++ + +l++ k++  +l +   + eee v++lk++l+e+k+ l+  +  + +k
  KOO22782.1 162 EAAERELRDLRAQLAAEIASSAEHFEARSKLSDEIAELRLQLEAEKKRSASLPSPGASPEEESVKQLKKSLNEAKEELEAAHRAIRAK 249
                 5667788888888888888899999999999999999999999999999999999999999999999999999999998766655554 PP

  == domain 2  score: 0.9 bits;  conditional E-value: 0.11
       TMPIT   8 ekefkeleetakeykqkleelsklqskcskeikkqkkrlkelksslkklkksvk.............eeeeeeveelkeelkerkkvlkev 85 
                 ++  +ele++++ +++k e+l++ ++   +++k++ + + +  + ++k ++ ++               + +++++lk++l+++++  + v
  KOO22782.1 233 NEAKEELEAAHRAIRAKEESLAQKKEGSLQAAKEHAELVAQHAALVTKGDELMRtvrlqrlaakalgMLYVQRLSSLKRQLRRMTERSQAV 323
                 5566677777777777777777777666666666655555544444333332222223334444444455555555555555555555555 PP

  == domain 3  score: 9.2 bits;  conditional E-value: 0.00032
       TMPIT   5 eelekefkeleetakeykqkleelsklqskcskeikkqkkrlkelksslkklkksvk..eeeeeeveelkeelkerk 79 
                 ++l +e  +l+  a +  + +e l k+ ++  +ei++q  rl++l+s+ ++l+++ +  +e +++ eel e+++  +
  KOO22782.1 335 ARLVDENAKLKRDAASALAAVEPLRKSLTHANSEIRQQAMRLQQLHSTAERLESTRRvnAELRTTNEELLEHVRFLT 411
                 678899999*******************************************9994433333333334433333333 PP

>> DUF4878  Domain of unknown function (DUF4878)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.2   0.00025      0.49       9      56 ..      31      80 ..      24     129 .. 0.75
   2 ?   -1.8   1.4       1.9   3.8e+03      25      58 ..     225     259 ..     221     273 .. 0.72

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00025
     DUF4878  9 peeavknFleavkeGdvedaikyltes..treedalaeklkgkfkelkak 56
                  e+v+ F+ a ++Gd+ +a+k+ te+  ++   a++e+l + ++ lk k
  KOO22782.1 31 GREVVQSFVAATEKGDAVAAAKLCTEDflYKTHSATTESLAAAQDRLKTK 80
                579**********************9944556667777777777776666 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 1.9
     DUF4878  25 vedaikyltestreedalaeklkgkfkelkak.ae 58 
                 v++++k l+e+++e +a   ++ +k++ l++k + 
  KOO22782.1 225 VKQLKKSLNEAKEELEAAHRAIRAKEESLAQKkEG 259
                 56778888888888888888888888877666433 PP

>> DUF1664  Protein of unknown function (DUF1664)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.4   1.9    0.0021       4.3      36     118 ..     165     254 ..     161     258 .. 0.83
   2 ?    3.4   0.9     0.038        76      42      91 ..     224     273 ..     222     295 .. 0.70
   3 ?    4.1   0.8     0.022        44      38     115 ..     308     388 ..     295     391 .. 0.68
   4 ?    3.8   0.3     0.029        57      52      99 ..     391     438 ..     387     459 .. 0.90

  Alignments for each domain:
  == domain 1  score: 7.4 bits;  conditional E-value: 0.0021
     DUF1664  36 krslsdavesvskqleqvseslaatkrhLssridrvdkkldeqkeiskei........keevtevredlseigedvesvkeavegleskle 118
                  r l+d  ++++ ++ +  e+  +++ +Ls++i+++  +l++ k+ s+++        +e v+++++ l+e +e++e+ ++a++  e++l+
  KOO22782.1 165 ERELRDLRAQLAAEIASSAEHF-EARSKLSDEIAELRLQLEAEKKRSASLpspgaspeEESVKQLKKSLNEAKEELEAAHRAIRAKEESLA 254
                 6899999999999999877776.6899****************999988644444444688*******************99998887765 PP

  == domain 2  score: 3.4 bits;  conditional E-value: 0.038
     DUF1664  42 avesvskqleqvseslaatkrhLssridrvdkkldeqkeiskeikeevte 91 
                  v+++ k+l++ +e+l+a+ r + ++ +++ +k + + +++ke +e v++
  KOO22782.1 224 SVKQLKKSLNEAKEELEAAHRAIRAKEESLAQKKEGSLQAAKEHAELVAQ 273
                 56777778888888888888877777777777777777666666665554 PP

  == domain 3  score: 4.1 bits;  conditional E-value: 0.022
     DUF1664  38 slsdavesvskqleqvsesla...atkrhLssridrvdkkldeqkeiskeikeevtevredlseigedvesvkeavegles 115
                 sl+  + +++++ + v e l+     + +L ++ +++ +   +  ++ + +++ +t++++++++    +++++++ e les
  KOO22782.1 308 SLKRQLRRMTERSQAVEEMLEgapVERARLVDENAKLKRDAASALAAVEPLRKSLTHANSEIRQQAMRLQQLHSTAERLES 388
                 455555555555444444444111457788888888888888888888888888888888888888888888888888886 PP

  == domain 4  score: 3.8 bits;  conditional E-value: 0.029
     DUF1664  52 qvseslaatkrhLssridrvdkkldeqkeiskeikeevtevredlsei 99 
                 +v ++l++t ++L +++  + ++l e++  +  ik ++ +v+++ +++
  KOO22782.1 391 RVNAELRTTNEELLEHVRFLTRSLSESQSRADVIKVQLLDVQGNHARV 438
                 68899**********************************999987765 PP

>> Sec8_exocyst  Sec8 exocyst complex component specific domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.0   2.5     0.005        10      80     118 ..     224     262 ..     221     273 .. 0.79
   2 ?    0.4   0.1      0.28   5.6e+02     101     124 ..     305     328 ..     301     330 .. 0.87
   3 ?    6.7   0.6    0.0031       6.3      84     120 ..     351     387 ..     338     400 .. 0.87
   4 ?   -1.4   0.1      0.98   1.9e+03      88     125 ..     389     426 ..     384     430 .. 0.69

  Alignments for each domain:
  == domain 1  score: 6.0 bits;  conditional E-value: 0.005
  Sec8_exocyst  80 siqesqekvselKesleeakkklstkkkeLkelnarsak 118
                   s+++ +++++e Ke+le+a++++ +k+++L + ++ s++
    KOO22782.1 224 SVKQLKKSLNEAKEELEAAHRAIRAKEESLAQKKEGSLQ 262
                   556667888888999999999999999999988887766 PP

  == domain 2  score: 0.4 bits;  conditional E-value: 0.28
  Sec8_exocyst 101 klstkkkeLkelnarsakykevie 124
                    ls  k +L+ + +rs++++e++e
    KOO22782.1 305 RLSSLKRQLRRMTERSQAVEEMLE 328
                   67788999*************997 PP

  == domain 3  score: 6.7 bits;  conditional E-value: 0.0031
  Sec8_exocyst  84 sqekvselKesleeakkklstkkkeLkelnarsakyk 120
                   +   v+ l++sl +a++++ ++   L++l+ +  +++
    KOO22782.1 351 ALAAVEPLRKSLTHANSEIRQQAMRLQQLHSTAERLE 387
                   5667899***********************9988876 PP

  == domain 4  score: -1.4 bits;  conditional E-value: 0.98
  Sec8_exocyst  88 vselKesleeakkklstkkkeLkelnarsakykeviei 125
                   ++ +  +l+ ++++l ++   L+    +s+   +vi++
    KOO22782.1 389 TRRVNAELRTTNEELLEHVRFLTRSLSESQSRADVIKV 426
                   55666777777777777777777777777777777654 PP

>> FapA  Flagellar Assembly Protein A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.5   6.7   0.00033      0.67     327     422 ..     178     266 ..     163     291 .. 0.82
   2 ?    2.5   2.5     0.021        43     337     420 ..     304     395 ..     292     411 .. 0.73

  Alignments for each domain:
  == domain 1  score: 8.5 bits;  conditional E-value: 0.00033
        FapA 327 evgldepelkeklkeleeeleeleeeleklkkkikklpklkaekqlesekkeqlkklletkeklkeeleeleeelkelkeeleskkeeakikvnke 422
                 e++ +  e+ e +++l +e+ el+ +le  kk+ ++lp+ +a++      +e++k+l++++++ keele+ ++ + + +e+l++k +e+++++ ke
  KOO22782.1 178 EIASS-AEHFEARSKLSDEIAELRLQLEAEKKRSASLPSPGASP-----EEESVKQLKKSLNEAKEELEAAHRAIRAKEESLAQK-KEGSLQAAKE 266
                 45455.56667779*******************99999966655.....489999*********************999999999.6666665553 PP

  == domain 2  score: 2.5 bits;  conditional E-value: 0.021
        FapA 337 eklkeleeeleeleeeleklkkk........ikklpklkaekqlesekkeqlkklletkeklkeeleeleeelkelkeeleskkeeakikvn 420
                 ++l+ l+++l+++ e+ + ++++         +++++ ++ k+  +  +  ++ l++++ + ++e+++   +l++l +  e+ ++  +++++
  KOO22782.1 304 QRLSSLKRQLRRMTERSQAVEEMlegapverARLVDENAKLKRDAASALAAVEPLRKSLTHANSEIRQQAMRLQQLHSTAERLESTRRVNAE 395
                 6789999******9999999999777777764444444445566667777777777888888888888887777777777777333355554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (584 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1892  (0.105527); expected 358.6 (0.02)
Passed bias filter:                      587  (0.0327403); expected 358.6 (0.02)
Passed Vit filter:                        85  (0.00474092); expected 17.9 (0.001)
Passed Fwd filter:                        38  (0.00211947); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 1.07u 0.36s 00:00:01.43 Elapsed: 00:00:00.54
# Mc/sec: 3257.16
//
Query:       KOO22783.1  [L=520]
Description: hypothetical protein Ctob_001377 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (520 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       619  (0.0345251); expected 358.6 (0.02)
Passed bias filter:                      471  (0.0262703); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.55u 0.24s 00:00:00.79 Elapsed: 00:00:00.41
# Mc/sec: 3797.78
//
Query:       KOO22784.1  [L=1185]
Description: hypothetical protein Ctob_001376 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      5e-07   29.7   2.0    2.5e-06   27.4   0.2    3.0  2  SLATT_1   SMODS and SLOG-associating 2TM effector domain 1
    2.7e-05   24.6   0.4    2.7e-05   24.6   0.4    2.5  3  DUF4231   Protein of unknown function (DUF4231)
  ------ inclusion threshold ------
       0.16   12.4   0.1        2.5    8.5   0.0    3.1  5  ATG_C     Autophagy-related protein C terminal domain


Domain annotation for each model (and alignments):
>> SLATT_1  SMODS and SLOG-associating 2TM effector domain 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.4   0.1      0.17     1e+03      18      55 ..     615     652 ..     611     690 .. 0.80
   2 !   27.4   0.2   4.1e-10   2.5e-06       1     115 [.    1042    1158 ..    1042    1161 .. 0.93

  Alignments for each domain:
  == domain 1  score: -0.4 bits;  conditional E-value: 0.17
     SLATT_1  18 eeneraakrwrlllillellalllaalrafgelsvdlv 55 
                 e ++ ++ +++ +l++++ll +ll +++++++ls  ++
  KOO22784.1 615 EVYNLRSWTMQCILYVFGLLTTLLSVISQIPALSNIWI 652
                 55666777788899999999999999998888887554 PP

  == domain 2  score: 27.4 bits;  conditional E-value: 4.1e-10
     SLATT_1    1 YlreRveeqldwYrkkaeeneraakrwrlllillellalllaalrafgelsvdlvgvlaavaaallaWlelkqyeelaaaYslaaeeLeiiraalea 97  
                  Y++ R +  l++ +k a + + + + +++++++++ l+++++ lr  +el    v++++av   + + +e+++++++++++++ ++eL ++ ++++ 
  KOO22784.1 1042 YMQFRARPILAYIEKTAPWRSFELQCLEVAIFVVSSLSAVMVGLR--QELAP-YVALTVAVGFVCKSAIEFTRLDKQVETFNKSQRELHNLLNQWDG 1135
                  99*******************************************..44433.7999999999999******************************8 PP

     SLATT_1   98 .....eateeewaklVadaEeai 115 
                       ++t+++++++V ++E+a+
  KOO22784.1 1136 mtrteRRTRSTIKQVVGTVETAM 1158
                  88898999999999999999987 PP

>> DUF4231  Protein of unknown function (DUF4231)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.6   0.4   4.6e-09   2.7e-05       8     101 ..     612     708 ..     605     712 .. 0.90
   2 ?   -1.5   0.1      0.58   3.5e+03      10      41 ..     838     868 ..     832     889 .. 0.60
   3 ?   -2.0   0.0      0.82   4.9e+03      21      70 ..    1069    1113 ..    1053    1129 .. 0.57

  Alignments for each domain:
  == domain 1  score: 24.6 bits;  conditional E-value: 4.6e-09
     DUF4231   8 kkasrakrrfrllrlitivlgallpilvs...sklgagvsvlkiltallsalvailaaleeffrykerWrryRstaEsLktekwlflakagpYsdnk 101
                 + a+ +  r +++++i+ v+g l+++l++       ++ ++l +  ++l ++va+l  +++  r ++++  +++++  L +e ++f +++ +Y+++k
  KOO22784.1 612 NNAEVYNLRSWTMQCILYVFGLLTTLLSVisqIPALSNIWILDAGMLVLPIFVALLGTISSRLRQRQKFSVAKMASHELVSEIYKFRTRSMEYDGQK 708
                 6688889999*******************98633566788889999***********************************************9876 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 0.58
     DUF4231  10 asrakrrfrllrlitivlgallpilvssklga 41 
                 as + +r +l r  + ++g+++ ++vs + ga
  KOO22784.1 838 ASGNATRRYLRRTYSGLTGTVAGVVVS-TAGA 868
                 445555555577777777777777777.3333 PP

  == domain 3  score: -2.0 bits;  conditional E-value: 0.82
     DUF4231   21 rlitivlgallpilvssklgagvsvlkiltallsalvailaaleeffryk 70  
                   +++ v++ l++++v       ++ l+  +al  a+  ++ + +ef r  
  KOO22784.1 1069 EVAIFVVSSLSAVMVG----LRQE-LAPYVALTVAVGFVCKSAIEFTRLD 1113
                  4445555555555555....2223.3333444555555566666665555 PP

>> ATG_C  Autophagy-related protein C terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.0      0.84     5e+03      50      80 ..     437     467 ..     416     468 .. 0.77
   2 ?   -3.1   0.0       1.8   1.1e+04      29      68 ..     837     876 ..     827     882 .. 0.65
   3 ?    8.5   0.0   0.00041       2.5       2      34 ..     941     973 ..     940     994 .. 0.88
   4 ?   -3.7   0.0       2.7   1.6e+04      66      85 ..    1072    1091 ..    1068    1092 .. 0.81
   5 ?   -2.2   0.0      0.92   5.5e+03      42      70 ..    1139    1167 ..    1118    1172 .. 0.71

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 0.84
       ATG_C  50 vkavvravPvavlrPligateavsktlqGvr 80 
                 v  +    P ++l+ + g+++a+s +++ vr
  KOO22784.1 437 VDFIQEGSPFLLLESTGGIAQAFSYIIKAVR 467
                 5555667899999999999999999987765 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 1.8
       ATG_C  29 aaqtilavpsevaeskgakgavkavvravPvavlrPliga 68 
                 aa+   +     ++ +g +g+v++vv ++  av+  +  +
  KOO22784.1 837 AASGNATRRYLRRTYSGLTGTVAGVVVSTAGAVVLSVGRI 876
                 4444444444445558888888888888888887666555 PP

  == domain 3  score: 8.5 bits;  conditional E-value: 0.00041
       ATG_C   2 slyasqPedlreGlqqAysslskglksaaqtil 34 
                 s+ a  P+ lreGl+ A + l++gl+ aa+++ 
  KOO22784.1 941 SKTALAPDVLREGLHVAADVLRDGLHVAATALS 973
                 5677889**********************9975 PP

  == domain 4  score: -3.7 bits;  conditional E-value: 2.7
       ATG_C   66 igateavsktlqGvrnqldp 85  
                  i ++  +s ++ G+r++l p
  KOO22784.1 1072 IFVVSSLSAVMVGLRQELAP 1091
                  6677788999*****99976 PP

  == domain 5  score: -2.2 bits;  conditional E-value: 0.92
       ATG_C   42 eskgakgavkavvravPvavlrPligate 70  
                  +++ +++++k+vv  v +a+l+ ++++t+
  KOO22784.1 1139 TERRTRSTIKQVVGTVETAMLNVAMALTD 1167
                  44666777777777777777777766665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1185 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       687  (0.0383178); expected 358.6 (0.02)
Passed bias filter:                      530  (0.029561); expected 358.6 (0.02)
Passed Vit filter:                        54  (0.00301188); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.84u 0.25s 00:00:01.08 Elapsed: 00:00:00.44
# Mc/sec: 8023.68
//
Query:       KOO22785.1  [L=415]
Description: lysine-specific demethylase no66-like protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.5e-33  114.5   0.0    1.1e-32  113.9   0.0    1.3  1  Cupin_4   Cupin superfamily protein


Domain annotation for each model (and alignments):
>> Cupin_4  Cupin superfamily protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  113.9   0.0   5.9e-37   1.1e-32       2     160 ..     138     291 ..     137     313 .. 0.92

  Alignments for each domain:
  == domain 1  score: 113.9 bits;  conditional E-value: 5.9e-37
                 HHHHHHTTTTS-EEE--S-C.CCCCCHHHHHHHHCCHHCHHCCC.EECTCCEEEEECCCCEEEE-SSB-SCCCHHHHHHCCHCC.CTTEEEEC-HHHC- CS
     Cupin_4   2 eeFlreyWqkkpllirralp.afagllspddLaeLaeeeevearlikgerdkaewkvsrgpleerrlrklpakdwtlLvqgvslwkkavaqLlqpfrfe 99 
                 e+Fl+e++ ++pl++ r ++ +++g +s +++++  +e  +       e d+a+++ + +++ ++++ ++p++ w+ + +g+s       ++ +p+r +
  KOO22785.1 138 ETFLKEIYGRRPLHVARTDRtYYDGWFSRAEMERQIREGGMRW---TDEVDAARYEGGVRTTHNGEGIATPEEVWKRYAEGCSI------RFSWPQRRS 227
                 89*****************99*******999999888888777...359***********************************......********* PP

                 HH.HHHHHHHHHH..S-EEEEEEEE-TTBBSS-SEE-SSEEEEEEEEC-EEEEEE-SCCCTTSS CS
     Cupin_4 100 pe.wrlddvmesf..slvgsnvYatpggsqgvgpHyDdyDVfllQleGrkrWrvykptvpelel 160
                 +  wr+  ++e+   +++g+n+Y+tp+gsqg++pH+Dd+D+++lQleG+k Wrvy+p + +++l
  KOO22785.1 228 DPlWRMLSQLEELfgCMAGANAYLTPAGSQGFAPHWDDIDALVLQLEGTKEWRVYAPRTSDEAL 291
                 ************99******************************************76666554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (415 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       629  (0.0350828); expected 358.6 (0.02)
Passed bias filter:                      444  (0.0247643); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.56u 0.23s 00:00:00.79 Elapsed: 00:00:00.43
# Mc/sec: 2896.22
//
Query:       KOO22786.1  [L=256]
Description: hypothetical protein Ctob_001374 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (256 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       414  (0.0230911); expected 358.6 (0.02)
Passed bias filter:                      353  (0.0196888); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.42u 0.26s 00:00:00.68 Elapsed: 00:00:00.41
# Mc/sec: 1889.92
//
Query:       KOO22787.1  [L=276]
Description: ATP-dependent RNA helicase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.4e-33  115.3   0.0    2.9e-33  115.1   0.0    1.1  1  DEAD       DEAD/DEAH box helicase
    0.00023   20.6   0.2     0.0018   17.7   0.0    2.0  2  CMS1       U3-containing 90S pre-ribosomal complex subunit
    0.00071   19.6   0.0      0.001   19.1   0.0    1.2  1  ResIII     Type III restriction enzyme, res subunit
     0.0056   17.0   0.1       0.05   13.9   0.1    2.2  1  AAA_22     AAA domain
  ------ inclusion threshold ------
      0.038   13.7   0.0      0.052   13.2   0.0    1.2  1  SWI2_SNF2  SWI2/SNF2 ATPase


Domain annotation for each model (and alignments):
>> DEAD  DEAD/DEAH box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  115.1   0.0   8.2e-37   2.9e-33       2     172 ..      57     223 ..      56     227 .. 0.89

  Alignments for each domain:
  == domain 1  score: 115.1 bits;  conditional E-value: 8.2e-37
                 HHHHHHHHHHHTTCEEEEEESTTSSHHHHHHHHHHHHHHHSTTSTS-EEEEEESSHHHHHHHHHHHHHHTTTSTSEEEEEETTSSHHHHHHHHHTT.CS CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xx RF
        DEAD   2 diQaeaiplilgggdvlvaaeTGsGKTlaflipvlqivyetkgktgpkalivePtreLaeqtlnnlkkfkkyidlrvlliiggvaardqlskldng.vd 99 
                 + Q++++  i +g+d +++a TGsGKTlafl+p+++ +    ++++p+al+++ +reLa q+++ ++  +  ++l v +++gg + ++ql+k++++ ++
  KOO22787.1  57 ALQRATFGPISSGRDAIIHAWTGSGKTLAFLLPLFELLD--ASSREPQALVLCQSRELAFQIARVAELALAGTGLGVAAVVGGANPNNQLEKIKKNrPQ 153
                 57999******************************8884..69**************************************************8555** PP

                 EEEEEHHHHHHHH.HCTSSHCTTEEEEEEETHHHHHHTTTHHHHHHHHHHSHHHCTTSTTTSEEEEEESSBS.HH CS
                 xxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xx RF
        DEAD 100 ivvgtpgrlddll.stgklnlsqvrflVlDEadrlldqgfsdfinrilnqlpqitcdgklqrqvivlSATlp.kd 172
                 ++vgtpgr+ dl  + +kl+l++vr +V+DE+d  l     ++++  l+ ++++++  +lq  +i+ SAT+    
  KOO22787.1 154 LIVGTPGRVNDLAfEWQKLKLQRVRHIVIDEVDDALRP---PHLDPTLRLIESAQDGRPLQ--LIFASATADtAA 223
                 ***********777999*******************98...66666666665445555677..*******98554 PP

>> CMS1  U3-containing 90S pre-ribosomal complex subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.7   0.0   4.9e-07    0.0018     124     208 ..      98     183 ..      89     187 .. 0.77
   2 ?    0.4   0.1     0.092   3.3e+02     116     156 ..     199     238 ..     194     244 .. 0.81

  Alignments for each domain:
  == domain 1  score: 17.7 bits;  conditional E-value: 4.9e-07
        CMS1 124 ngsPelLvltlaalRaaDlaralk.klqtkdskvakLFakhikleesvtylkksrigiavGtpgRildLl.eeeslsvdeLkrivlD 208
                 +  P+ Lvl+ +   a  +ar     l   +  va + +     ++++  +kk+r  + vGtpgR+ dL  e + l+++ +++iv+D
  KOO22787.1  98 SREPQALVLCQSRELAFQIARVAElALAGTGLGVAAVVGG-ANPNNQLEKIKKNRPQLIVGTPGRVNDLAfEWQKLKLQRVRHIVID 183
                 5567777777777777777776551334566667766664.456789999*******************8899*************9 PP

  == domain 2  score: 0.4 bits;  conditional E-value: 0.092
        CMS1 116 klvksaksngsPelLvltlaalRaaDlaralkklqtkdskv 156
                 +l++ ++ +g P  L+ ++a+   a + ra  +l  k   v
  KOO22787.1 199 RLIE-SAQDGRPLQLIFASATADTAAVRRAATQLLRKPMLV 238
                 7888.56789**********999999999988887776665 PP

>> ResIII  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.1   0.0   2.8e-07     0.001      25     140 ..      70     184 ..      44     192 .. 0.73

  Alignments for each domain:
  == domain 1  score: 19.1 bits;  conditional E-value: 2.8e-07
                 SEEEEEESTTSTHHHHH.HHHHHHH-S.....-EEEEESSHHHHHHHHHHGGGGTGG....GEEEESSS-B--.........-SEEEEEHHHHHHTH.. CS
      ResIII  25 krglikmaTGtGKTlva.aklierllkkgkeekflflvprkslleqtleefkkflseaykeigkkvsgdkkka..kekdstnkkilvttiqsldadsee 120
                 + ++i++ TG+GKTl   + l e l  + +e ++l+l+++++l  q  +  +  l  +   +  +v g + ++  ++++++  +++v t  +++     
  KOO22787.1  70 RDAIIHAWTGSGKTLAFlLPLFELLDASSREPQALVLCQSRELAFQIARVAELALAGTGLGVAAVVGGANPNNqlEKIKKNRPQLIVGTPGRVNDLA-- 166
                 67899***********9788888888888888************99997776666666555555544444444445777778888888887777766.. PP

                 ......HHHTTT-SEEEEET CS
      ResIII 121 eeeeseellrdrfdviiiDE 140
                    e ++l+ +r   i+iDE
  KOO22787.1 167 --FEWQKLKLQRVRHIVIDE 184
                 ..444555555555677777 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.9   0.1   1.4e-05      0.05       9     128 ..      73     215 ..      67     220 .. 0.70

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 1.4e-05
      AAA_22   9 vvtGesGtGKTtllrr.lleqldeeakaeeerpevvfvtlpsst...sskdllrellralglelka........................erlsseell 79 
                 ++++ +G+GKT+     l+e ld+       r ++++v ++s +     + +++  l  +gl+  a                         +++  +l 
  KOO22787.1  73 IIHAWTGSGKTLAFLLpLFELLDAS-----SREPQALVLCQSRElafQIARVAELALAGTGLGVAAvvgganpnnqlekikknrpqlivgTPGRVNDLA 166
                 899999****997654266666433.....477777777777775566666666666666666666889998888888888888888775555555554 PP

      AAA_22  80 ealeqalraravielliiDEaqh.lr.s..eealeeLrsllnlsrkgvqliLv 128
                     q l+ ++v + ++iDE++  lr +  +  l+ + s ++    ++qli++
  KOO22787.1 167 FEW-QKLKLQRV-RHIVIDEVDDaLRpPhlDPTLRLIESAQD--GRPLQLIFA 215
                 444.44555555.7*********9965257888888888888..999999986 PP

>> SWI2_SNF2  SWI2/SNF2 ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.0   1.5e-05     0.052      15     106 ..      63     163 ..      43     191 .. 0.67

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 1.5e-05
   SWI2_SNF2  15 e...gdrkgGviWHtqGSGKsltmvflakklleeelknpkvvvvtDRkdLdkQlsktfaka......g.eekpkqaesrkeLkellekesekiifttiq 103
                     ++ +  +i   +GSGK+l  ++   +ll+++ ++p+ +v+   ++L  Q+++ ++ a      g  + +  a+ +++L e+++k+++++i+ t  
  KOO22787.1  63 FgpiSSGRDAIIHAWTGSGKTLAFLLPLFELLDASSREPQALVLCQSRELAFQIARVAELAlagtglGvAAVVGGANPNNQL-EKIKKNRPQLIVGTPG 160
                 15555678999999**********999999999899*******************998876444433223333344444444.4455667777777766 PP

   SWI2_SNF2 104 Kfe 106
                 + +
  KOO22787.1 161 RVN 163
                 665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (276 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       318  (0.0177366); expected 358.6 (0.02)
Passed bias filter:                      264  (0.0147247); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.45u 0.24s 00:00:00.69 Elapsed: 00:00:00.42
# Mc/sec: 1967.81
//
Query:       KOO22788.1  [L=171]
Description: hypothetical protein Ctob_004601 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
          7    5.7  14.2         13    4.8  14.2    1.3  1  DUF2457   Protein of unknown function (DUF2457)


Domain annotation for each model (and alignments):
>> DUF2457  Protein of unknown function (DUF2457)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.8  14.2   0.00074        13      42      83 ..     122     163 ..     117     168 .. 0.85

  Alignments for each domain:
  == domain 1  score: 4.8 bits;  conditional E-value: 0.00074
     DUF2457  42 LgeeaeeEaeeeeeeeeddeedeeddddddddedddedddee 83 
                 L eea +Ea ++e+++e dee e   +d+dd+e+ d+d+  e
  KOO22788.1 122 LHEEAGAEAAADEDDREYDEEREVVLEDHDDEEEADTDEGAE 163
                 789*****************9999999999999988887655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (171 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       893  (0.0498076); expected 358.6 (0.02)
Passed bias filter:                      441  (0.024597); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.25s 00:00:00.68 Elapsed: 00:00:00.40
# Mc/sec: 1269.40
//
Query:       KOO22789.1  [L=196]
Description: hypothetical protein Ctob_004602, partial [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.2e-05   25.2   0.1     0.0025   17.8   0.1    2.6  3  cNMP_binding  Cyclic nucleotide-binding domain
  ------ inclusion threshold ------
        0.1   12.9   0.2       0.32   11.3   0.2    1.8  2  DUF365        Domain of unknown function (DUF365)
       0.13   12.2   0.1       0.23   11.4   0.1    1.3  1  DUF4609       Domain of unknown function (DUF4609)


Domain annotation for each model (and alignments):
>> cNMP_binding  Cyclic nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.8   0.1   4.2e-07    0.0025       2      30 ..      10      38 ..       9      43 .. 0.90
   2 ?   -1.9   0.0      0.59   3.5e+03      71      89 .]      40      58 ..      38      58 .. 0.85
   3 !    4.6   0.0    0.0056        33      20      47 ..      95     123 ..      83     141 .. 0.72

  Alignments for each domain:
  == domain 1  score: 17.8 bits;  conditional E-value: 4.2e-07
                  EEE-TT-EEE-TTSB-SEEEEEEES-EEE CS
  cNMP_binding  2 rsfkagevifrqGdpadslyivlsGevrv 30
                  ++f ag+ +f+qGd++ ++yi+ sG +r 
    KOO22789.1 10 KNFGAGQQVFKQGDEGSTFYIIFSGGIRC 38
                  6799*********************8875 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 0.59
                  TEEEEEEEHHHHHHHHHH- CS
  cNMP_binding 71 dsellalprddflellqqd 89
                  +++ll +++d+ +++++++
    KOO22789.1 40 PTQLLLIEKDQYDKACAKH 58
                  689999****999999876 PP

  == domain 3  score: 4.6 bits;  conditional E-value: 0.0056
                   EEEEEES-EEEEEEETTS.EEEEE...EE-T CS
  cNMP_binding  20 lyivlsGevrvyrlsedgkevvla...vlgp 47 
                    y++lsG++r+  l + g +  la   v++p
    KOO22789.1  95 RYFILSGTCRI--LMRLGLTEELAsqlVHTP 123
                   5**********..666665444443444455 PP

>> DUF365  Domain of unknown function (DUF365)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.0      0.61   3.7e+03       9      29 ..      59      79 ..      55      95 .. 0.71
   2 ?   11.3   0.2   5.3e-05      0.32      25      61 ..     145     181 ..     120     189 .. 0.81

  Alignments for each domain:
  == domain 1  score: -1.7 bits;  conditional E-value: 0.61
                STT-B--EEEEEEEEEEES-T CS
      DUF365  9 redtGfvGeaeikrvvlsedp 29
                + ++G    a +k+v l+ed 
  KOO22789.1 59 HHEKGLQRVAFLKQVFLFEDH 79
                556677777777777776654 PP

  == domain 2  score: 11.3 bits;  conditional E-value: 5.3e-05
                 EES-THHHHHHTSTTBSS-HHHHHHHHHHHHHT---- CS
      DUF365  25 lsedpleifekygdrvfltkeelkkyvkskerwrkgk 61 
                 ++e  +e++++y ++ +l ++ +++ +++++ w++ k
  KOO22789.1 145 FDERTQELMRQYAEKFYLDNDKVQRSIQKQHNWGEYK 181
                 4567899**************************7655 PP

>> DUF4609  Domain of unknown function (DUF4609)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.1   3.8e-05      0.23      38      54 ..     166     182 ..     162     187 .. 0.89

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 3.8e-05
     DUF4609  38 eeqrTirEqadwGpysR 54 
                 + qr i+ q++wG y+R
  KOO22789.1 166 KVQRSIQKQHNWGEYKR 182
                 56**************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (196 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       781  (0.0435607); expected 358.6 (0.02)
Passed bias filter:                      532  (0.0296726); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.45u 0.26s 00:00:00.71 Elapsed: 00:00:00.43
# Mc/sec: 1364.97
//
Query:       KOO22790.1  [L=384]
Description: hypothetical protein Ctob_004598 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (384 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       631  (0.0351944); expected 358.6 (0.02)
Passed bias filter:                      388  (0.0216409); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.52u 0.25s 00:00:00.77 Elapsed: 00:00:00.44
# Mc/sec: 2606.17
//
Query:       KOO22791.1  [L=1026]
Description: u3 snornp-associated protein utp7, partial [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.1e-52  178.4   0.1    3.1e-51  174.5   0.1    2.5  1  Peptidase_C69  Peptidase family C69
      1e-35  121.4   0.0    1.6e-33  114.3   0.0    2.5  2  BING4CT        BING4CT (NUC141) domain
    6.6e-05   23.6   2.4     0.0013   19.6   0.0    3.8  4  WD40           WD domain, G-beta repeat
     0.0016   18.7   0.0        1.7    9.0   0.0    3.5  3  ANAPC4_WD40    Anaphase-promoting complex subunit 4 WD40 doma


Domain annotation for each model (and alignments):
>> Peptidase_C69  Peptidase family C69
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  174.5   0.1     7e-55   3.1e-51      57     397 ..     502     906 ..     475     911 .. 0.87

  Alignments for each domain:
  == domain 1  score: 174.5 bits;  conditional E-value: 7e-55
  Peptidase_C69  57 dlPenplrytsvpna.....lgkegileeagineanvamsatetittnervlgadPlv...skggigeedlitlvLpyiksARegvkrlgdlleey 144
                    ++P++  + + v ++      + +g++ +   ++++++  ++  + + e++ g+   +   + +++++++li+ +L+++++ARe++ ++++l e y
     KOO22791.1 502 HFPAQDHSPGDVREIwdferGTLNGVIPQPNHTYNVMSHGNEHGVVIAETTHGGIGSLaagKGTILDYGSLIMTTLQRARTAREAITVMAELCEAY 597
                    555555555555544433333446899999999999999************99999997777789******************************* PP

  Peptidase_C69 145 Gty.esngvafsDkneiWylEtig......GhhWvAvRvPddayvvaaNqlridef.dlndkedyllSedlkefieekhldetve..kefnfrkaf 230
                    G+   ++g+ +sD +e Wy+E++g      G  +vA RvP+  ++++aNq ri  f   +d++ +++++d++ f+ +++l ++      f+f +++
     KOO22791.1 598 GYHsTMEGFSISDGDECWYMELLGkgdygkGILYVALRVPEGYFTANANQARISAFlPCDDASTCMMAPDVTTFAIARGLWKGSPtdPAFSFSDVY 693
                    **9899**********************999************************9446888******************998764478******* PP

  Peptidase_C69 231 gsstkkdrryntpRvWylqrkln...........PeieqdpesedlplivkperKisvedvkyvlssHyegteyDpygs..egtaesrkry..... 308
                     + t    r++++RvWy++++l            P+++  +  + +pl v+p+r ++ +dv+ +lss yeg+ +Dp  +  +g++++++ry     
     KOO22791.1 694 DPVTPTGARFCEARVWYIFQQLAeptdfdaeyylPYAQGFNLTRRMPLWVRPKRGLTRADVHAALSSKYEGSWLDPALDvtAGPEHTPYRYnglsw 789
                    **************************************99************************************9887799********99999 PP

  Peptidase_C69 309 ..........rpigvnrtsevavlqvRpn.kpdairgvqwlafgsasfavlvPfytnvektpayyrdtteevttd.................nlyW 376
                              r +g++ t   +v+ vR + +p+++r++ w + ++++ a  vP+y  ++ +  +y+d++ ++                    +++W
     KOO22791.1 790 qlknqsfvneRIVGTQFTAWHFVASVRGRaTPAPLRALLWWGADDHAWAPKVPLYGGASAVHRSYDDANCSARLAcrvanglpgsmmafswdSAFW 885
                    99999999999****************7627999***************************99999654332211112222333333344559*** PP

  Peptidase_C69 377 lnrliavlvdseydateedve 397
                    +n ++a lv+++y++    v+
     KOO22791.1 886 VNSAVARLVYQDYNRAGPLVT 906
                    *************98776665 PP

>> BING4CT  BING4CT (NUC141) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.4   0.0    0.0071        32      15      46 ..     230     261 ..     222     266 .. 0.87
   2 !  114.3   0.0   3.6e-37   1.6e-33       1      79 []     343     421 ..     343     421 .. 0.99

  Alignments for each domain:
  == domain 1  score: 4.4 bits;  conditional E-value: 0.0071
     BING4CT  15 lrFvpfeDvlgvghskgissiivPGsGepnfd 46 
                 +r  p++ ++++gh++g+ ++  P   ep + 
  KOO22791.1 230 MRLNPWNALVALGHRNGVVTMWTPNLSEPAVK 261
                 67789*******************99999765 PP

  == domain 2  score: 114.3 bits;  conditional E-value: 3.6e-37
     BING4CT   1 pYlthklpgskieslrFvpfeDvlgvghskgissiivPGsGepnfdaleanpfetkkqrrereVrsLLeKlqpelItld 79 
                 pYlth lpg   ++ rF+p+eDvlg+ghs+g+ss++ PG+Gepnfd++eanp+e++kqrre eV+sLL+Kl+p +I++d
  KOO22791.1 343 PYLTHLLPGCAAATERFCPYEDVLGIGHSRGFSSMLAPGAGEPNFDSFEANPYENRKQRREGEVHSLLDKLPPATIQMD 421
                 7****************************************************************************98 PP

>> WD40  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.2   0.0      0.17   7.7e+02      10      37 ..     140     168 ..     112     169 .. 0.74
   2 ?   -3.1   0.1         4   1.8e+04       2      16 ..     173     188 ..     172     198 .. 0.78
   3 ?   -2.2   0.0       2.1   9.6e+03      17      37 ..     231     251 ..     215     252 .. 0.72
   4 !   19.6   0.0   2.8e-07    0.0013       9      38 .]     264     294 ..     258     294 .. 0.91

  Alignments for each domain:
  == domain 1  score: 1.2 bits;  conditional E-value: 0.17
                 S..SSEEEEEEETTSSEEEEEETTSEEEEE CS
        WD40  10 H..ssvtslafspdgawlasGsdDgtvriW 37 
                 H    v++++f +d++++a++   ++++i+
  KOO22791.1 140 HvrETVRDVCFLRDHTMFAAA-QHKNLYIY 168
                 4323499999**999999854.36666665 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 4
                 EEEEEEESSSS.EEEE CS
        WD40   2 qclrtltGHss.vtsl 16 
                 + l+ l+ H++ v+ l
  KOO22791.1 173 TELHCLRDHGPeVHRL 188
                 5789999996679887 PP

  == domain 3  score: -2.2 bits;  conditional E-value: 2.1
                 EEETTSSEEEEEETTSEEEEE CS
        WD40  17 afspdgawlasGsdDgtvriW 37 
                 + +p +a++a G+++g v +W
  KOO22791.1 231 RLNPWNALVALGHRNGVVTMW 251
                 455666666668889998888 PP

  == domain 4  score: 19.6 bits;  conditional E-value: 2.8e-07
                 SS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40   9 GH.ssvtslafspdgawlasGsdDgtvriWd 38 
                  H ++v++la +++g+++a++++Dg +++Wd
  KOO22791.1 264 CHkGGVSALAIDRSGRYMATAGRDGALKLWD 294
                 69667*************************9 PP

>> ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.5   0.0    0.0093        42      46      81 ..     109     144 ..      74     155 .. 0.90
   2 ?    0.5   0.0      0.17   7.8e+02      37      79 ..     181     223 ..     159     233 .. 0.85
   3 !    9.0   0.0   0.00037       1.7      36      79 ..     264     307 ..     230     317 .. 0.72

  Alignments for each domain:
  == domain 1  score: 4.5 bits;  conditional E-value: 0.0093
  ANAPC4_WD40  46 WkpdgklLavaysdgevrlldaesgkvvhslsvkse 81 
                  +  +g+ L  + ++g++ l+d e  k+ ++l+v ++
   KOO22791.1 109 YTANGRHLLLGGHKGHIALVDWEGCKITRELHVRET 144
                  7789***********************999988766 PP

  == domain 2  score: 0.5 bits;  conditional E-value: 0.17
  ANAPC4_WD40  37 edsevrsLaWkpdgklLavaysdgevrlldaesgkvvhslsvk 79 
                  ++ ev+ L +     lL    s g++r +d+++g  v  l++ 
   KOO22791.1 181 HGPEVHRLGFLRYHWLLTTIGSAGRLRYMDVSTGAHVADLPTR 223
                  677899999999999999999**************99988776 PP

  == domain 3  score: 9.0 bits;  conditional E-value: 0.00037
  ANAPC4_WD40  36 kedsevrsLaWkpdgklLavaysdgevrlldaesgkvvhslsvk 79 
                   +++ v++La   +g+ +a a  dg+++l d+ + + +h++ + 
   KOO22791.1 264 CHKGGVSALAIDRSGRYMATAGRDGALKLWDIRTYRPLHEYYTP 307
                  57889******************************999998665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1026 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1158  (0.0645881); expected 358.6 (0.02)
Passed bias filter:                      661  (0.0368676); expected 358.6 (0.02)
Passed Vit filter:                        63  (0.00351386); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.80u 0.33s 00:00:01.13 Elapsed: 00:00:00.48
# Mc/sec: 6492.12
//
Query:       KOO22792.1  [L=490]
Description: hypothetical protein Ctob_004595 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
     0.0045   17.5  28.8     0.0086   16.6  14.9    2.6  2  APG6_N          Apg6 coiled-coil region
  ------ inclusion threshold ------
      0.083   13.0   2.2       0.25   11.5   1.9    1.9  2  RasGAP_C        RasGAP C-terminus
       0.13   12.3   0.4       0.13   12.3   0.4    2.5  2  Suppressor_APC  Adenomatous polyposis coli tumour suppressor 
       0.24   11.2  25.9        1.3    8.8   9.9    2.2  2  ERM             Ezrin/radixin/moesin family
        2.1    9.0  19.6       0.19   12.4   6.5    2.7  2  HIP1_clath_bdg  Clathrin-binding domain of Huntingtin-interac


Domain annotation for each model (and alignments):
>> APG6_N  Apg6 coiled-coil region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.7   6.6    0.0056        20      45      87 ..     218     260 ..     183     264 .. 0.65
   2 !   16.6  14.9   2.4e-06    0.0086      11     123 ..     263     397 ..     261     420 .. 0.80

  Alignments for each domain:
  == domain 1  score: 5.7 bits;  conditional E-value: 0.0056
      APG6_N  45 qdeeleeleeeleklekeeeelleeLkelekereeleaelaal 87 
                 ++ e  +++ e  +le+e+++++   +ele++r+el+ +++++
  KOO22792.1 218 SKLEAGAAKPEAIQLEAERRRAEDLANELEATRRELDIQIKKA 260
                 2334455666666777777777777777777777777777765 PP

  == domain 2  score: 16.6 bits;  conditional E-value: 2.4e-06
      APG6_N  11 leeldkqleqaekerdaYeeflkklkkekkeeek....................qdeeleeleee........leklekeeeelle.eLkelekereel 80 
                 l+ + ++l++++kerdaY++ l+ l+ke +  ++                    +d+       e        l+ le    +l + eL +l+++++  
  KOO22792.1 263 LDAMRRELDATQKERDAYSSQLESLQKEIEACSSdsgdvdgrvqlpghdehgdeHDD-------EhdavivrnLASLEVPLGALRNhELSQLDSHQRIA 354
                 789*************************8776669************7776666333.......23333433599999999888753788887776666 PP

      APG6_N  81 eaelaaleeelealeeeeerfwreynelqlelleleeeldsle 123
                 ++  ++ ++ ++a  +e e+fw+e +  + +l+  ee ++  e
  KOO22792.1 355 DELAKERARREAAELAEREAFWSEIKREAAQLALAEEARAEAE 397
                 66666666666666688899***********999999998766 PP

>> RasGAP_C  RasGAP C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   1.9     7e-05      0.25      28      87 ..     240     298 ..     231     363 .. 0.82
   2 ?   -1.2   0.0      0.59   2.1e+03      20      38 ..     343     361 ..     319     381 .. 0.73

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 7e-05
    RasGAP_C  28 qellneIakdirnkgrlrekrkeElesleetlktLseknnylesqlesYkayienvleql 87 
                 ++l ne++++ r+++ +  k  +El++++  l++ ++ ++ ++sqles+++ ie + +++
  KOO22792.1 240 EDLANELEATRRELDIQ-IKKARELDAMRRELDATQKERDAYSSQLESLQKEIEACSSDS 298
                 56666666666666554.55679*********************************8877 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 0.59
    RasGAP_C  20 visrennyqellneIakdi 38 
                  +s+ +++q + +e+ak+ 
  KOO22792.1 343 ELSQLDSHQRIADELAKER 361
                 4566677777777777664 PP

>> Suppressor_APC  Adenomatous polyposis coli tumour suppressor protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.4   3.7e-05      0.13      13      45 ..     261     293 ..     253     304 .. 0.88
   2 ?   -1.6   0.1      0.78   2.8e+03      43      71 ..     341     369 ..     339     378 .. 0.78

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 3.7e-05
  Suppressor_APC  13 qekdlLlqgLeaveraRdWylqqlrevqerqks 45 
                     +e d++ ++L+a +++Rd y +ql+++q+ ++ 
      KOO22792.1 261 RELDAMRRELDATQKERDAYSSQLESLQKEIEA 293
                     6778999*********************98875 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 0.78
  Suppressor_APC  43 qkslgkvetqfdlqtdliqerlefelari 71 
                      ++l++++++  +  +l +er + e+a +
      KOO22792.1 341 NHELSQLDSHQRIADELAKERARREAAEL 369
                     57788888888888888888888887765 PP

>> ERM  Ezrin/radixin/moesin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.8   9.9   0.00036       1.3      10      95 ..     204     295 ..     201     305 .. 0.77
   2 ?    8.2   8.0   0.00054       1.9      27     106 ..     346     421 ..     340     469 .. 0.73

  Alignments for each domain:
  == domain 1  score: 8.8 bits;  conditional E-value: 0.00036
         ERM  10 leerLkqlqeeaekaqeaLreseetaelLaekarraeeeaelLeqkaaea......eeeiqrlkesaekeeeekeklerklreaeleaarle 95 
                 +  +L+q+    ++ + +   ++ +a +L+ ++rrae  a++Le+ ++e+       +e ++++++  ++++e+++   +l+  + e++   
  KOO22792.1 204 MDPELEQMAWALQQSKLEAGAAKPEAIQLEAERRRAEDLANELEATRRELdiqikkARELDAMRRELDATQKERDAYSSQLESLQKEIEACS 295
                 56678888888888888888888999999999999999999999999999666666666777777777788888888888877777777655 PP

  == domain 2  score: 8.2 bits;  conditional E-value: 0.00054
         ERM  27 aLreseetaelLaekarraeeeaelLeqkaaeaeeeiqrlkesaekeeeekeklerklreaeleaarleeeserkeeeae 106
                 +L   ++ a++La+++  a++ea +L++++a +  ei+r + + +  ee +++ er ++ea ++a+ ++ee+    +ea 
  KOO22792.1 346 QLDSHQRIADELAKER--ARREAAELAEREA-FWSEIKREAAQLALAEEARAEAERVAAEAASLAEAVAEEEAS-GAEAA 421
                 5777888889998765..4555556665544.444555556666677888999999999999999888888765.34444 PP

>> HIP1_clath_bdg  Clathrin-binding domain of Huntingtin-interacting protein 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   6.5   5.3e-05      0.19      40      96 ..     231     291 ..     204     297 .. 0.63
   2 ?    1.7   5.2      0.11     4e+02      15      86 ..     347     421 ..     338     424 .. 0.68

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 5.3e-05
  HIP1_clath_bdg  40 keeaerk.leeqkeelekLkrele...akraelarlkssLesseqsgeqlssqlaaLqaEk 96 
                     + eaer+  e+ + ele+ +rel    +k  el+ ++  L+ ++++ +  ssql++Lq+E 
      KOO22792.1 231 QLEAERRrAEDLANELEATRRELDiqiKKARELDAMRRELDATQKERDAYSSQLESLQKEI 291
                     4444333034455666666666642224456677777777777777777777777777764 PP

  == domain 2  score: 1.7 bits;  conditional E-value: 0.11
  HIP1_clath_bdg  15 lsvarqaqeev..erekkeleeelerlkeeaerkle.eqkeelekLkreleakraelarlkssLesseqsgeqls 86 
                     l + +   +e+  er+++e +e  er    +e k e  q    e+ ++e e+  ae a+l ++++++e sg++ +
      KOO22792.1 347 LDSHQRIADELakERARREAAELAEREAFWSEIKREaAQLALAEEARAEAERVAAEAASLAEAVAEEEASGAEAA 421
                     45555555666123444555555555444444444438888899999999999***********99999999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (490 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1602  (0.0893524); expected 358.6 (0.02)
Passed bias filter:                      619  (0.0345251); expected 358.6 (0.02)
Passed Vit filter:                        76  (0.00423894); expected 17.9 (0.001)
Passed Fwd filter:                        18  (0.00100396); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.71u 0.32s 00:00:01.03 Elapsed: 00:00:00.47
# Mc/sec: 3133.58
//
Query:       KOO22793.1  [L=583]
Description: hypothetical protein Ctob_004596 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
          4    7.2   8.2        9.9    5.9   8.2    1.6  1  DUF3679   Protein of unknown function (DUF3679)
          8    6.5  62.0      0.028   14.5  52.3    1.9  2  HC2       Histone H1-like nucleoprotein HC2


Domain annotation for each model (and alignments):
>> DUF3679  Protein of unknown function (DUF3679)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.9   8.2    0.0011       9.9      15      46 ..     207     240 ..     205     247 .. 0.78

  Alignments for each domain:
  == domain 1  score: 5.9 bits;  conditional E-value: 0.0011
     DUF3679  15 lGmqqAneGlkkmkGYddpsleqvf..sitkgeq 46 
                 lGmq+A +G ++m+G ++  +++v+  s+++  q
  KOO22793.1 207 LGMQEAMHGSEAMQGAAQGAIQGVMqgSMQQAMQ 240
                 8******************999998333555545 PP

>> HC2  Histone H1-like nucleoprotein HC2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.5  52.3   3.1e-06     0.028      14     179 ..      25     214 ..       6     224 .. 0.74
   2 ?   -4.4   2.1         2   1.8e+04     169     169 ..     501     501 ..     464     545 .. 0.45

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 3.1e-06
         HC2  14 AakkaavrKpaAkKaaakktvvrKvaaKKta...arKtvakktvakkkv...aakkaaakkaavkkavakkvvakkkvakKavAKKaaakKvvakkvva 106
                 A+ +aavr  +A   a++k vv  +aa K+    a  ++a +++a+ k+    a kaaa  aav ka+a+k++a k++a  a+A Kaa + ++a k  a
  KOO22793.1  25 ATAQAAVRPKSAEAEAIEKKVVDLAAAEKVMeegANISAADRVIAAEKAekaEAEKAAAAEAAVAKAAASKAAASKAAA--AAAAKAADQLAAADKL-A 120
                 6777999988899999999999999999976333555677777776554111455777788888888888888888554..4555555555555554.4 PP

         HC2 107 kKtvakkaaaakKpaakkavakkaaarKaaakKavaKkaast.....................ckkkhkkkaackrvasssakraasgsKsrlr 179
                  K +a  +aaa K aa  a++ kaa+ Kaaa Ka+ K+  ++                     ++ +++ +aac    +  a++   g + +++
  KOO22793.1 121 SKWAADTRAAADKLAAEWAASEKAAVNKAAAEKAAVKNNQAAekasieyrrlreihdeqnnytAHVEAQLHAACMELDAAVATVQYLGMQEAMH 214
                 6667777788888888888888888888888888888777666777889999999999999988889999999998888888887777776665 PP

  == domain 2  score: -4.4 bits;  conditional E-value: 2
         HC2 169 r 169
                 +
  KOO22793.1 501 V 501
                 2 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (583 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1974  (0.110101); expected 358.6 (0.02)
Passed bias filter:                      416  (0.0232026); expected 358.6 (0.02)
Passed Vit filter:                        67  (0.00373696); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.67u 0.31s 00:00:00.98 Elapsed: 00:00:00.46
# Mc/sec: 3796.73
//
Query:       KOO22794.1  [L=146]
Description: hypothetical protein Ctob_004597 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (146 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       257  (0.0143343); expected 358.6 (0.02)
Passed bias filter:                      239  (0.0133304); expected 358.6 (0.02)
Passed Vit filter:                        12  (0.000669307); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.41u 0.25s 00:00:00.65 Elapsed: 00:00:00.44
# Mc/sec: 1000.79
//
Query:       KOO22795.1  [L=299]
Description: hypothetical protein Ctob_000643 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
     0.0002   22.1  34.7      0.096   13.6   0.1    6.9  7  SHIPPO-rpt  Sperm-tail PG-rich repeat


Domain annotation for each model (and alignments):
>> SHIPPO-rpt  Sperm-tail PG-rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.9   0.3     0.028   5.1e+02      14      30 ..      17      34 ..       8      35 .. 0.76
   2 ?   -0.2   0.0      0.13   2.3e+03       1      25 [.      54      82 ..      54      87 .. 0.56
   3 !    9.1   0.0   0.00014       2.5       1      26 [.      97     127 ..      97     131 .. 0.80
   4 ?   -2.5   1.5      0.67   1.2e+04       2       7 ..     152     158 ..     151     176 .. 0.63
   5 !   13.6   0.1   5.3e-06     0.096       1      29 [.     190     223 ..     190     225 .. 0.95
   6 !   12.2   2.3   1.6e-05      0.28       1      26 [.     248     278 ..     248     283 .. 0.94
   7 !    5.5   1.0     0.002        35       1       7 [.     291     297 ..     291     299 .] 0.86

  Alignments for each domain:
  == domain 1  score: 1.9 bits;  conditional E-value: 0.028
  SHIPPO-rpt 14 psn.ksaPkysfGqrkrd 30
                +s  +s  +y fG+ +r+
  KOO22795.1 17 LSTrPSPANYGFGSSTRN 34
                455556669*****9985 PP

  == domain 2  score: -0.2 bits;  conditional E-value: 0.13
  SHIPPO-rpt  1 lPGPGtYkpnk....nvpsn.ksaPkysfG 25
                +PGP  Y++      ++ s   s+P + fG
  KOO22795.1 54 TPGPC-YETQGsmasQADSGkLSTPQWQFG 82
                68887.666665555444444455555555 PP

  == domain 3  score: 9.1 bits;  conditional E-value: 0.00014
  SHIPPO-rpt   1 lPGPGtYkpnk....nvpsn.ksaPkysfGq 26 
                 +P PGtY+  +    +++s+ +s P + fG+
  KOO22795.1  97 TPAPGTYESASsfqrQSLSQrTSFPRFGFGT 127
                 7**********99888888877777777876 PP

  == domain 4  score: -2.5 bits;  conditional E-value: 0.67
  SHIPPO-rpt   2 PGPGt.Y 7  
                 PGP + Y
  KOO22795.1 152 PGPAApY 158
                 7887644 PP

  == domain 5  score: 13.6 bits;  conditional E-value: 5.3e-06
  SHIPPO-rpt   1 lPGPGtYkpnk....nvpsn.ksaPkysfGqrkr 29 
                 +PGPG+Y+ +     ++ s+ +   ++ fG+ +r
  KOO22795.1 190 SPGPGSYEDKGvlgqQSSSKlDTVASFGFGSSTR 223
                 6*****************************9987 PP

  == domain 6  score: 12.2 bits;  conditional E-value: 1.6e-05
  SHIPPO-rpt   1 lPGPGtYkpnk....nvpsn.ksaPkysfGq 26 
                 +PGP +Y+++     + +s+ +saP++ fG 
  KOO22795.1 248 TPGPPAYNIPNgigiQPTSRgRSAPSWGFGK 278
                 7****************************96 PP

  == domain 7  score: 5.5 bits;  conditional E-value: 0.002
  SHIPPO-rpt   1 lPGPGtY 7  
                 +PGPG+Y
  KOO22795.1 291 SPGPGAY 297
                 6****** PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (299 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       227  (0.0126611); expected 358.6 (0.02)
Passed bias filter:                      165  (0.00920297); expected 358.6 (0.02)
Passed Vit filter:                        10  (0.000557756); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.26s 00:00:00.66 Elapsed: 00:00:00.40
# Mc/sec: 2269.91
//
Query:       KOO22796.1  [L=592]
Description: hypothetical protein Ctob_000642 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.8e-10   38.4   0.0      8e-10   37.9   0.0    1.1  1  DUF229    Protein of unknown function (DUF229)


Domain annotation for each model (and alignments):
>> DUF229  Protein of unknown function (DUF229)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.9   0.0   4.5e-14     8e-10     121     185 ..     478     546 ..     461     587 .. 0.83

  Alignments for each domain:
  == domain 1  score: 37.9 bits;  conditional E-value: 4.5e-14
      DUF229 121 ekekkkysVlilglDSlSrmnfaRslprtveflkkl......ghielqgynkVgdnsfpNlvalLtGkifd 185
                 e+ ++++sVl+l lD++Sr +++R  p+ +  l+ l        +e+++y++Vg ns pN+v++LtG   d
  KOO22796.1 478 EAYSSQLSVLLLMLDATSRAHLHRMVPQSLALLRALassgaaTLYEFPFYSIVGFNSVPNMVPMLTGV--D 546
                 567899**************************9865222222468**********************3..3 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (592 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       370  (0.020637); expected 358.6 (0.02)
Passed bias filter:                      315  (0.0175693); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.52u 0.26s 00:00:00.78 Elapsed: 00:00:00.40
# Mc/sec: 4452.33
//
Query:       KOO22797.1  [L=369]
Description: hypothetical protein Ctob_000648 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
  ------ inclusion threshold ------
      0.054   13.5   0.0        0.1   12.6   0.0    1.4  1  Exotox-A_target  Exotoxin A, targeting


Domain annotation for each model (and alignments):
>> Exotox-A_target  Exotoxin A, targeting
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   5.8e-06       0.1      52     132 ..      43     126 ..      28     132 .. 0.84

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 5.8e-06
                      --GGGHHHHHHHHHHS.TTTT.......HHHHHH..HHHSHHHHHHHHHHHHH.HHHHHHCC-TT--HHHHTT--EEEEE--SS CS
  Exotox-A_target  52 lsfdrvdqvvddllasrpvsGaqdpealadlGea..vretpeqarealaeaea.rleayvangaGadeddaaradvlsltcpvd 132
                        ++r+   ++ +++    +G++ pea  ++  a  +r   e ar a +  e  r  a  +  +G ++  +++a v  l cp  
       KOO22797.1  43 HKYKRIGHGIKAMIEQGEKTGSELPEAANQFSSArlLRVVRELARDAQTGDEQkRWAAIDSVLTGGSDMHSQSAHVFLLICPQL 126
                      5688889999999999999***********998866899********9987751566777889*******************75 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (369 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       375  (0.0209158); expected 358.6 (0.02)
Passed bias filter:                      345  (0.0192426); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.24s 00:00:00.69 Elapsed: 00:00:00.40
# Mc/sec: 2787.94
//
Query:       KOO22798.1  [L=466]
Description: nde1p [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    2.9e-38  131.8   0.0    3.6e-38  131.5   0.0    1.1  1  Pyr_redox_2  Pyridine nucleotide-disulphide oxidoreductase
    4.1e-10   40.1   0.0    1.3e-09   38.5   0.0    1.8  1  Pyr_redox    Pyridine nucleotide-disulphide oxidoreductase


Domain annotation for each model (and alignments):
>> Pyr_redox_2  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  131.5   0.0   4.1e-42   3.6e-38      70     294 .]      80     343 ..      20     343 .. 0.87

  Alignments for each domain:
  == domain 1  score: 131.5 bits;  conditional E-value: 4.1e-42
                  CHCCTCEEEEESCEEEEETEEECTCEEEEEESEEEE---EEE-BCTCTTC.....TTBEECCSECHHHHHHCCSS-T..................SEE CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx....xxxxxxxxxxxxxxxxxxxxxxx..................xxx RF
  Pyr_redox_2  70 llgeevvkidpgkkkvklekkkegdeekiaydklvlAtGssprdlgipGv....aenvgklvrtldsaealklkllp..................kri 145
                  ++++++ ++d+++++v++e+  +g e+k+ +d+lv+ tG++++++++pGv    +++v++l ++l +a+++++  l+                   ++
   KOO22798.1  80 YYQAKARSLDFASRTVTCEDIFKGAEFKVGFDYLVVGTGCKTNTFNTPGVaereGKEVFFL-KHLFHARQIRSRILEcferatnptlppaaverlLSF 176
                  333578899*********99999***************************88855555555.888899999999999999999999999999777777 PP

                  EEES-SHHHHHHHHHHHHHT-..............EEEEEESSSSSSTTS-HHHHHHHHHHHHHTTEEEEESCEEEEEEETTE...EEE..EEETTSC CS
                  xxxxxxxxxxxxxxxxxxxxx..............xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxx..xxxxxxx RF
  Pyr_redox_2 146 vvvGgGyiGvElAaalaklgk..............evtlveardrllraldkelsaaleealekeGvevklgtsvkeidgnge...kle..vvledge 224
                  vvvGgG++++E++ +l+++                +vtlvea++ ll ++dk+l  +++  l ++ ++v+++t v+++++ ++    ++   +l+dg+
   KOO22798.1 177 VVVGGGPTSCEFTTELHDFLTqdvsrwypdlaqkvRVTLVEAGPSLLGSFDKALVTYYTSSLLRKQIDVRTHTAVTRVEETHDecgTHTtiAHLGDGS 274
                  ****************99966689999999999999*******************************************9999998444589****** PP

                  EEEESEEEE-S-EEES-HHCSHCCT-EE.EETTEEE--TTSBES..STTEEE-GGGCTECCSS--HHHHHHHH CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2 225 eidadlvvvavGvrpstelleeklglel.derggivvdeflrtn..vpgiyaiGDvaggkggpelaqaAvqqG 294
                  +++  ++v+++G+ p + +  ++ gl++  ++ +i+vdeflr++     ++a+GD+a   g p la +A qqG
   KOO22798.1 275 KLPFGTMVWSAGLAPVKFT--QSCGLPThARTKRILVDEFLRVEglRGRVFALGDCA--GGLPPLASVAEQQG 343
                  ****************866..899**9978999*********9767999********..99**********98 PP

>> Pyr_redox  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.5   0.0   1.4e-13   1.3e-09       2      72 ..     176     260 ..     175     272 .. 0.84

  Alignments for each domain:
  == domain 1  score: 38.5 bits;  conditional E-value: 1.4e-13
                 EEEECSSHHHHHHHHHH............HHTT....SEEEEEESSSSSSTTSSHHHHHHHHHHHHHTTEEEECSEEEEEEEEETTS CS
   Pyr_redox   2 vvvvGgGyiglElAgal............aelg....kkVtvversdkllrllDeeaskilqeklekngievllntkveeiegsedg 72 
                  vvvGgG + +E+ ++l                     +Vt+ve+++ ll  +D+++ ++ + +l ++ i+v+++t v+++e++ d+
  KOO22798.1 176 FVVVGGGPTSCEFTTELhdfltqdvsrwyP--DlaqkVRVTLVEAGPSLLGSFDKALVTYYTSSLLRKQIDVRTHTAVTRVEETHDE 260
                 69***************5555555555552..05555899******************************************98886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (466 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       316  (0.0176251); expected 358.6 (0.02)
Passed bias filter:                      285  (0.015896); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.51u 0.26s 00:00:00.77 Elapsed: 00:00:00.42
# Mc/sec: 3343.39
//
Query:       KOO22799.1  [L=1264]
Description: intraflagellar transport protein 122-like protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.7e-18   66.6  17.8    7.8e-07   29.7   0.1    9.2 10  WD40           WD domain, G-beta repeat
    3.3e-11   43.3   0.2      0.062   13.6   0.1    6.3  6  ANAPC4_WD40    Anaphase-promoting complex subunit 4 WD40 doma
    0.00024   21.0   0.4      0.018   14.9   0.2    2.5  2  Clathrin       Region in Clathrin and VPS
  ------ inclusion threshold ------
      0.011   14.8   0.7        4.3    6.3   0.0    4.0  5  Coatomer_WDAD  Coatomer WD associated region
      0.046   14.2   7.3        1.8    9.2   0.2    4.3  4  TPR_19         Tetratricopeptide repeat
      0.065   12.2   0.1         17    4.2   0.0    3.5  4  Ge1_WD40       WD40 region of Ge1, enhancer of mRNA-decapping
       0.11   11.8   0.0        2.9    7.1   0.0    2.9  4  WD40_like      WD40-like domain
       0.11   11.3   0.0       0.22   10.4   0.0    1.4  1  Me-amine-dh_H  Methylamine dehydrogenase heavy chain (MADH)


Domain annotation for each model (and alignments):
>> WD40  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.1   0.0    0.0023       5.2      12      32 ..      20      39 ..      14      47 .. 0.74
   2 !   29.7   0.1   3.5e-10   7.8e-07       1      37 [.      49      86 ..      49      87 .. 0.95
   3 ?    4.0   0.0     0.047     1e+02       9      29 ..      97     118 ..      90     124 .. 0.79
   4 !    6.3   0.1    0.0088        20       9      36 ..     134     164 ..     127     166 .. 0.80
   5 !    7.0   0.1    0.0053        12      13      38 .]     181     210 ..     172     210 .. 0.87
   6 !    6.6   0.1    0.0068        15       9      37 ..     223     250 ..     216     251 .. 0.86
   7 !    8.5   0.1    0.0018         4      12      37 ..     266     291 ..     257     292 .. 0.89
   8 ?   -0.9   0.0       1.6   3.6e+03      25      34 ..     432     441 ..     421     443 .. 0.84
   9 ?   -2.8   0.0       6.5   1.5e+04      10      23 ..     457     471 ..     454     482 .. 0.69
  10 ?   -3.9   0.0         8   1.8e+04      19      31 ..     848     858 ..     843     859 .. 0.82

  Alignments for each domain:
  == domain 1  score: 8.1 bits;  conditional E-value: 0.0023
                SEEEEEEETTSSEEEEEETTS CS
        WD40 12 svtslafspdgawlasGsdDg 32
                +++++afspdg+ l++++   
  KOO22799.1 20 CIYDIAFSPDGKQLVAAC-GS 39
                499**********97554.33 PP

  == domain 2  score: 29.7 bits;  conditional E-value: 3.5e-10
                TEEEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEE CS
        WD40  1 gqclrtltGH.ssvtslafspdgawlasGsdDgtvriW 37
                g++l++l+GH +  +++a+ +dg+ +asG++D+t+ iW
  KOO22799.1 49 GDLLHSLKGHkKTLYCVAYAKDGKRFASGGEDKTIIIW 86
                5789******888************************* PP

  == domain 3  score: 4.0 bits;  conditional E-value: 0.047
                 SSSS.EEEEEEETTSSEEEEEE CS
        WD40   9 GHss.vtslafspdgawlasGs 29 
                  H++ + +l+++p  + lasG+
  KOO22799.1  97 SHNDaIQCLSYNPVTQQLASGT 118
                 59556**************994 PP

  == domain 4  score: 6.3 bits;  conditional E-value: 0.0088
                 SS..SS.EEEEEEETTSSEEEEEETTSEEEE CS
        WD40   9 GH..ss.vtslafspdgawlasGsdDgtvri 36 
                  H  ss ++++++  dg+ l+ G+ Dg++ i
  KOO22799.1 134 KHkvSSrICCMSWTVDGTVLTLGMFDGSISI 164
                 5776447************966988***988 PP

  == domain 5  score: 7.0 bits;  conditional E-value: 0.0053
                 EEEEEEETTSSE....EEEEETTSEEEEEE CS
        WD40  13 vtslafspdgaw....lasGsdDgtvriWd 38 
                 ++sla++p+ +     la G++D+t+ ++d
  KOO22799.1 181 IWSLAWNPSRDEspnlLAVGCWDQTLSFYD 210
                 999*999999999998899*******9998 PP

  == domain 6  score: 6.6 bits;  conditional E-value: 0.0068
                 SSSSEEEEEEETTSSEEEEEETTSEEEEE CS
        WD40   9 GHssvtslafspdgawlasGsdDgtvriW 37 
                 GH +  ++++  +g +l+ G+ D++  +W
  KOO22799.1 223 GH-DPACISYFANGEYLCVGGSDRKATLW 250
                 78.445***********99977**99999 PP

  == domain 7  score: 8.5 bits;  conditional E-value: 0.0018
                 SEEEEEEETTSSEEEEEETTSEEEEE CS
        WD40  12 svtslafspdgawlasGsdDgtvriW 37 
                 +v+++   p+ + +a G+ Dgt+ ++
  KOO22799.1 266 WVWCCVPRPNANHVAIGCNDGTISLY 291
                 499999*****************987 PP

  == domain 8  score: -0.9 bits;  conditional E-value: 1.6
                 EEEEETTSEE CS
        WD40  25 lasGsdDgtv 34 
                 l++G+ Dgtv
  KOO22799.1 432 LVAGCADGTV 441
                 567999***9 PP

  == domain 9  score: -2.8 bits;  conditional E-value: 6.5
                 S.SSEEEEEEETTSS CS
        WD40  10 H.ssvtslafspdga 23 
                 H  ++++l+ s + +
  KOO22799.1 457 HtAPIRCLDLSMHRD 471
                 8677****7665554 PP

  == domain 10  score: -3.9 bits;  conditional E-value: 8
                 ETTSSEEEEEETT CS
        WD40  19 spdgawlasGsdD 31 
                  p+ +wl+ G  D
  KOO22799.1 848 LPYAQWLI-GA-D 858
                 58999*98.88.7 PP

>> ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.6   0.0   2.9e-05     0.064      34      90 ..      14      68 ..       5     110 .. 0.90
   2 !   13.6   0.1   2.8e-05     0.062      33      90 ..     133     187 ..     123     189 .. 0.78
   3 !    6.2   0.0    0.0056        13      36      81 ..     176     225 ..     168     234 .. 0.75
   4 ?   -0.6   0.0      0.77   1.7e+03      43      65 ..     228     250 ..     206     269 .. 0.82
   5 ?    2.3   0.0     0.095   2.1e+02      47      67 ..     273     293 ..     249     302 .. 0.83
   6 ?   -2.7   0.0       3.4   7.6e+03      37      75 ..     457     495 ..     451     503 .. 0.81

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 2.9e-05
  ANAPC4_WD40 34 edkedsevrsLaWkpdgklLavaysdgevrlldaesgkvvhslsvksekavtclgWg 90
                 +d+ +s + ++a++pdgk L+ a+  ++v ++d  +g+++hsl+ +++ +  c+ ++
   KOO22799.1 14 RDGVKSCIYDIAFSPDGKQLVAACG-SRVLMYDCIDGDLLHSLKGHKK-TLYCVAYA 68
                 57788999*************9997.5899*************99998.58888876 PP

  == domain 2  score: 13.6 bits;  conditional E-value: 2.8e-05
  ANAPC4_WD40  33 eedkedsevrsLaWkpdgklLavaysdgevrlldaesgkvvhslsvksekavtclgWg 90 
                  +++k +s++ +++W  dg++L  ++ dg++++ d   gk   s++  ++ a+ +l W+
   KOO22799.1 133 AKHKVSSRICCMSWTVDGTVLTLGMFDGSISIRDKA-GKEKTSIE--RKAAIWSLAWN 187
                  4567889999**********************9964.55444444..44448888886 PP

  == domain 3  score: 6.2 bits;  conditional E-value: 0.0056
  ANAPC4_WD40  36 kedsevrsLaWkpdg....klLavaysdgevrlldaesgkvvhslsvkse 81 
                  +++  + sLaW+p+     +lLav++ d +++++d+  ++  +    +++
   KOO22799.1 176 ERKAAIWSLAWNPSRdespNLLAVGCWDQTLSFYDVTGAQHGKDRALGHD 225
                  56788999***985322338***************998876666665555 PP

  == domain 4  score: -0.6 bits;  conditional E-value: 0.77
  ANAPC4_WD40  43 sLaWkpdgklLavaysdgevrll 65 
                  ++++  +g+ L+v+ sd +  l 
   KOO22799.1 228 CISYFANGEYLCVGGSDRKATLW 250
                  678889**********9988776 PP

  == domain 5  score: 2.3 bits;  conditional E-value: 0.095
  ANAPC4_WD40  47 kpdgklLavaysdgevrllda 67 
                  +p+ +  a++++dg+++l++ 
   KOO22799.1 273 RPNANHVAIGCNDGTISLYQL 293
                  7899999**********9975 PP

  == domain 6  score: -2.7 bits;  conditional E-value: 3.4
  ANAPC4_WD40  37 edsevrsLaWkpdgklLavaysdgevrlldaesgkvvhs 75 
                  +   +r+L  ++    La++ +  ++ ++d  +g ++ +
   KOO22799.1 457 HTAPIRCLDLSMHRDKLAIVDDHAALVVYDLLTGATLAE 495
                  567789999999999999999999999999999888765 PP

>> Clathrin  Region in Clathrin and VPS
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.2   8.1e-06     0.018      75     131 ..     639     694 ..     622     698 .. 0.83
   2 ?    4.2   0.0     0.016        35      74     129 ..     696     751 ..     694     762 .. 0.76

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 8.1e-06
                 HHHHHHHT-SSHHHHHHHHHTTXTHSSHSSXSSSSHCSCHHHHTTTTTXXSHHHHHH CS
    Clathrin  75 kvaklcekadlyeeavilykkinefkkaisllkklkdfddaieyaakvsnpelwekl 131
                  +a ++  +++ +ea  l+ k n++++ai+++ +l  +++a +ya  +s pe++++l
  KOO22799.1 639 LIATVLAYQGKLQEAARLFCKANRVERAIDMYSDLRKWEEARQYAHSAS-PEAAQEL 694
                 5777888888999******************************997665.5555554 PP

  == domain 2  score: 4.2 bits;  conditional E-value: 0.016
                 THHHHHHHT-SSHHHHHHHHHTTXTHSSHSSXSSSSHCSCHHHHTTTTTXXSHHHH CS
    Clathrin  74 ekvaklcekadlyeeavilykkinefkkaisllkklkdfddaieyaakvsnpelwe 129
                 +++a+++e+++ +  a+  y + +e+ kai +l  ++ +d+ +++ ++++ +  ++
  KOO22799.1 696 KRQARWAEETNDTSVAYQTYIAAGEIIKAIHILGGKGWYDQLADVSKTLDPKTQAA 751
                 689****************************7777666666666666655544444 PP

>> Coatomer_WDAD  Coatomer WD associated region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.0       1.5   3.5e+03     125     175 ..      39      90 ..      28     118 .. 0.68
   2 ?   -2.9   0.0       1.2   2.7e+03      34     133 ..     101     211 ..      79     215 .. 0.70
   3 ?    6.3   0.0    0.0019       4.3      78     178 ..     301     402 ..     224     421 .. 0.85
   4 ?    2.1   0.0     0.035        79     348     384 ..     586     622 ..     569     631 .. 0.84
   5 ?    1.0   0.0     0.077   1.7e+02     394     428 ..     695     729 ..     686     740 .. 0.85

  Alignments for each domain:
  == domain 1  score: -3.3 bits;  conditional E-value: 1.5
                    XX.XXXXXXXXXXXXXXXXXXX..XXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
  Coatomer_WDAD 125 egsvsfYDweqgklvrridvkk..vknVvwsddgelvalvskdtvyilsynle 175
                    +  v +YD   g l+++++ +k  +  V   +dg+ +a   +d+++i+  n++
     KOO22799.1  39 SR-VLMYDCIDGDLLHSLKGHKktLYCVAYAKDGKRFASGGEDKTIIIWTNKA 90 
                    44.78888888888888886543355566777777777776666555544443 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 1.2
                    XXXXXXXXXXXXXXXXXXXXXXXXXX...XXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXX.XXXXXXXXXXXXXXXXXXXXXX.......XX CS
  Coatomer_WDAD  34 ypqslshnpngrfvlVcgdgeyiiyt...alalrnkaygkgldfvwvssnrfavles.sksvkifknfkekktksikleyqvdkifg.......Ga 118
                     +q ls+np  + ++    +++ + +   +  ++ k       + w   + +  l +  +s++i ++  +k++ si+ + ++ ++          +
     KOO22799.1 101 AIQCLSYNPVTQQLASGTASDFGLWSpeqKSVAKHKVSSRICCMSWTVDGTVLTLGMfDGSISI-RDKAGKEKTSIERKAAIWSLAWnpsrdesPN 195
                    4788899998888888888888888877655556666666667888888887777777888888.7776666667777776666665666666655 PP

                    XXXX.XXXX.XXXXXX CS
  Coatomer_WDAD 119 lLgv.ksegsvsfYDw 133
                    lL v + ++++sfYD+
     KOO22799.1 196 LLAVgCWDQTLSFYDV 211
                    5555233455666666 PP

  == domain 3  score: 6.3 bits;  conditional E-value: 0.0019
                    X.XXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXXXXXXXX..XXXXXXXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
  Coatomer_WDAD  78 s.snrfavlessksvkifknfkekktksikleyqvdkifg..GalLgvksegsvsfYDweqgklvrridvkkvknVvwsddgelvalvskdtvyil 170
                      ++r+a++e  ++v++ +n+  +++ +ik+   v+ki      l ++ ++  + +Y++   +   +i   +v++   + d +l+ ++s++ +  +
     KOO22799.1 301 LyRERYAYREYMTDVVV-QNMVTESKVRIKCRSYVRKIAIykERLAVQLPDR-LLIYELSADEAGGEIAYRPVERLQLDVDCNLLVVTSQHFLLCV 394
                    25899************.898777779**********998855565666666.***************************************9999 PP

                    XXXXX... CS
  Coatomer_WDAD 171 synleave 178
                    +++l+ ++
     KOO22799.1 395 EKKLQLYS 402
                    99998554 PP

  == domain 4  score: 2.1 bits;  conditional E-value: 0.035
                    -HHHHHHHHHHHHHTT-HHHHHHHHHHTT-HHHHHHH CS
  Coatomer_WDAD 348 deekWkkLgdaAlsqgniklaeeayqkakdfdkLllL 384
                    +++ Wk+L+++ l+   +++  +ay + +d   L l+
     KOO22799.1 586 TDADWKQLAQESLKALALDVSRKAYVRLRDTRYLDLI 622
                    5678************************999888776 PP

  == domain 5  score: 1.0 bits;  conditional E-value: 0.077
                    HHHHHHHHHHTT-HHHHHHHHHHHT-HHHHHHHHH CS
  Coatomer_WDAD 394 LkkLakiaekkgdyniafqaalllgdvekcvdlLi 428
                    +k+ a  ae+ +d+++a+q+++  g++ k++ +L 
     KOO22799.1 695 VKRQARWAEETNDTSVAYQTYIAAGEIIKAIHILG 729
                    55567789************************995 PP

>> TPR_19  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.5   0.1     0.045     1e+02      31      63 ..     653     685 ..     645     687 .. 0.84
   2 ?    2.6   0.1     0.091     2e+02       7      48 ..     688     728 ..     685     730 .. 0.88
   3 ?    9.2   0.2   0.00078       1.8       6      53 ..     828     872 ..     824     884 .. 0.90
   4 ?    5.7   0.1    0.0094        21       1      44 [.     854     896 ..     854     897 .. 0.84

  Alignments for each domain:
  == domain 1  score: 3.5 bits;  conditional E-value: 0.045
      TPR_19  31 LAeallalgqldeAealLdalpeedpddaryas 63 
                  A++  ++++++ A+++ ++l +++   ++++s
  KOO22799.1 653 AARLFCKANRVERAIDMYSDLRKWEEARQYAHS 685
                 599999*************99999998666655 PP

  == domain 2  score: 2.6 bits;  conditional E-value: 0.091
      TPR_19   7 yaeAlalleq.a.lqedpknaearllLAeallalgqldeAealL 48 
                 +++A++l ++ a ++e+ ++  +++   + ++a+g++ +A+ +L
  KOO22799.1 688 PEAAQELVKRqArWAEETNDTSVAY---QTYIAAGEIIKAIHIL 728
                 6789999999777899999999999...*********9999887 PP

  == domain 3  score: 9.2 bits;  conditional E-value: 0.00078
      TPR_19   6 dyaeAlalleqalqedpk.naearllLAeallalgqldeAealLdalpe 53 
                 + +eAl+l eq     pk  + + l +A+ l+ + +++eA+++ ++++e
  KOO22799.1 828 QWDEALKLIEQ----HPKlAPKVYLPYAQWLIGADRFEEAQEAFKQAGE 872
                 56899999999....9999999********************9999875 PP

  == domain 4  score: 5.7 bits;  conditional E-value: 0.0094
      TPR_19   1 llaegdyaeAlalleqalqedpknaearllLAeallalgqldeA 44 
                 l+ + +++eA+++++qa  e pk++e +  L+   +   ++++A
  KOO22799.1 854 LIGADRFEEAQEAFKQA-GEGPKSLEMLRTLIHNAVLEHRYQDA 896
                 678899**********9.77799999999998877777777776 PP

>> Ge1_WD40  WD40 region of Ge1, enhancer of mRNA-decapping protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.7   0.0     0.046     1e+02     187     207 ..      18      38 ..      14      73 .. 0.85
   2 ?    4.2   0.0    0.0076        17     139     211 ..      86     162 ..      74     166 .. 0.78
   3 ?   -4.0   0.0       2.5   5.5e+03     202     227 ..     197     222 ..     194     224 .. 0.84
   4 ?    0.8   0.0     0.083   1.9e+02     196     217 ..     273     294 ..     252     301 .. 0.81

  Alignments for each domain:
  == domain 1  score: 1.7 bits;  conditional E-value: 0.046
    Ge1_WD40 187 hsliveaafspdGtalatase 207
                 +s+i + afspdG  l +a+ 
  KOO22799.1  18 KSCIYDIAFSPDGKQLVAACG 38 
                 57999************9996 PP

  == domain 2  score: 4.2 bits;  conditional E-value: 0.0076
    Ge1_WD40 139 dddeaskllvltrgdkaeiwsvdmiaskygsgelsv....eeieegllkieehsliveaafspdGtalatasedGev 211
                  +++a+ +l ++++d +++ s + ++++  sg +s     +  ++++ k +  s i + +++ dGt+l     dG +
  KOO22799.1  86 WTNKAEGILKYSHNDAIQCLSYNPVTQQLASGTASDfglwSPEQKSVAKHKVSSRICCMSWTVDGTVLTLGMFDGSI 162
                 56788899999999*******9999999999887762222333446666666789********************87 PP

  == domain 3  score: -4.0 bits;  conditional E-value: 2.5
    Ge1_WD40 202 latasedGevkffqvyledeeeprCL 227
                 la+ + d ++ f+ v   ++ ++r L
  KOO22799.1 197 LAVGCWDQTLSFYDVTGAQHGKDRAL 222
                 899***********998888777766 PP

  == domain 4  score: 0.8 bits;  conditional E-value: 0.083
    Ge1_WD40 196 spdGtalatasedGevkffqvy 217
                  p+   +a+ ++dG++ ++q+ 
  KOO22799.1 273 RPNANHVAIGCNDGTISLYQLK 294
                 6777889*************85 PP

>> WD40_like  WD40-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.1   0.0      0.21   4.7e+02       3      30 ..      62      89 ..      60     105 .. 0.84
   2 ?    7.1   0.0    0.0013       2.9       8      71 ..     231     294 ..     228     302 .. 0.78
   3 ?   -3.2   0.0       1.8     4e+03     115     186 ..     325     395 ..     313     408 .. 0.73
   4 ?   -1.3   0.0      0.48   1.1e+03     126     230 ..     465     566 ..     430     574 .. 0.71

  Alignments for each domain:
  == domain 1  score: -0.1 bits;  conditional E-value: 0.21
   WD40_like  3 iYsidiskkgslilyGgkddkctvlkle 30
                +Y + + k+g+ ++ Gg+d+++ + + +
  KOO22799.1 62 LYCVAYAKDGKRFASGGEDKTIIIWTNK 89
                8******************999887655 PP

  == domain 2  score: 7.1 bits;  conditional E-value: 0.0013
   WD40_like   8 iskkgslilyGgkddkctvlkleslesvsivesfedSvifvkll.dddlilvvtlDGtillslle 71 
                 +  +g+++ +Gg d k+t+ + e   + +i ++ +d v  +    + +++ ++ +DGti+l++l+
  KOO22799.1 231 YFANGEYLCVGGSDRKATLWTKEGVRLTTI-AERDDWVWCCVPRpNANHVAIGCNDGTISLYQLK 294
                 5679***************98776666655.5557777766554144699999******999987 PP

  == domain 3  score: -3.2 bits;  conditional E-value: 1.8
   WD40_like 115 evllgqsseIkeikiennkiysLsesafivfdlfsqnieykisvkdiktfeiienkdilligtegeililkk 186
                 +v +   s +++i i ++++     +++++++l + +   +i ++ ++ ++   + ++l+++  +++l+  +
  KOO22799.1 325 KVRIKCRSYVRKIAIYKERLAVQLPDRLLIYELSADEAGGEIAYRPVERLQLDVDCNLLVVTS-QHFLLCVE 395
                 566677788888888888888878888999999999999999999999999877888777654.44444433 PP

  == domain 4  score: -1.3 bits;  conditional E-value: 0.48
   WD40_like 126 eikiennkiysLse.safivfdlfsqnieykisvkdiktfeiienkdilligtegeililkknvilqkidvegkPecillvddylivGgsfkyllliNi 223
                 +++++++k+    +  a++v+dl +  ++ + +  ++ + ++    d+l+ +  g++ i    + +++  ++g+   ++  ++  i G +   l  i +
  KOO22799.1 465 DLSMHRDKLAIVDDhAALVVYDLLTGATLAEEQNAEAVVWNTE-VPDMLCFSGHGTLSIKTGSFPVHQQRMQGV---VVGFKGSRIYGLNYVALQAIDV 559
                 4555555554443314689999999999999888888888765.899999999999999999998888888884...7777777777777777777777 PP

   WD40_like 224 klnvntf 230
                 + +   +
  KOO22799.1 560 PQSATLY 566
                 6666666 PP

>> Me-amine-dh_H  Methylamine dehydrogenase heavy chain (MADH)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.0   9.6e-05      0.22     242     338 ..     131     229 ..     115     232 .. 0.76

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 9.6e-05
                    -EEEETTTTEEEEEEEE--TT-TTS-EEE..EEEEETTT--EEEEEEEEEEESEE..EE-SSSS-EEEEEETTTTEEEEEETTT--EEEEE---SS CS
  Me-amine-dh_H 242 qvayhrardriylladqrakwkhktasrf..vfvvdaktgkrlakielgheidsi..svsqdakpqlyalstedktlyifdaetgkevssvnelgr 333
                     va h+ + ri  ++   +  +  t   f   + +  k+gk  + ie +  i s+  + s+d+ p+l a+ + d+tl  +d +tg + ++   lg+
     KOO22799.1 131 SVAKHKVSSRICCMSWTVDG-TVLTLGMFdgSISIRDKAGKEKTSIERKAAIWSLawNPSRDESPNLLAVGCWDQTLSFYD-VTGAQHGKDRALGH 224
                    56666666666666554443.333334442246678899*************99833579*****************9887.799999******** PP

                    S--EE CS
  Me-amine-dh_H 334 gpqvv 338
                     p  +
     KOO22799.1 225 DPACI 229
                    99865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1264 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       666  (0.0371465); expected 358.6 (0.02)
Passed bias filter:                      563  (0.0314016); expected 358.6 (0.02)
Passed Vit filter:                        63  (0.00351386); expected 17.9 (0.001)
Passed Fwd filter:                        16  (0.000892409); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.90u 0.30s 00:00:01.20 Elapsed: 00:00:00.46
# Mc/sec: 8177.66
//
Query:       KOO22800.1  [L=76]
Description: hypothetical protein Ctob_000645 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (76 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       643  (0.0358637); expected 358.6 (0.02)
Passed bias filter:                      301  (0.0167884); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.27s 00:00:00.62 Elapsed: 00:00:00.41
# Mc/sec: 549.97
//
Query:       KOO22801.1  [L=214]
Description: mitochondrial substrate carrier family protein b-like protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.5e-39  133.1   2.4    5.5e-19   67.9   0.2    2.1  2  Mito_carr  Mitochondrial carrier protein
  ------ inclusion threshold ------
        3.3    7.6   5.5       0.61   10.0   1.1    2.0  2  DUF1072    Protein of unknown function (DUF1072)


Domain annotation for each model (and alignments):
>> Mito_carr  Mitochondrial carrier protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.9   0.2   6.2e-23   5.5e-19       3      94 ..      16     102 ..      14     105 .. 0.94
   2 !   65.4   0.2   3.6e-22   3.2e-18       2      93 ..     109     211 ..     108     213 .. 0.85

  Alignments for each domain:
  == domain 1  score: 67.9 bits;  conditional E-value: 6.2e-23
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSTTTSCSSHHHHHHHHHHHHHHHGGGTTHHHHHHHHHHHHHHHHHHHHHHHHHHC CS
   Mito_carr   3 lsvlkellaGglagavatlvttPldvvKtrlqtqkksskksksaaildvlkkiykeeGlrglyrGllpnllrvapasalkfvlyetlkrlll 94 
                 l++ ++llaGg+ag++a+++++Pl+v+Kt   + +++ +      i ++++ ++k  G+r++y Gl+p+l+ ++p+ +  f++yetlk++++
  KOO22801.1  16 LPAGARLLAGGIAGMCAAVIVYPLEVIKTLRTVYPEQCTG-----IDETFRCVMKFGGIRSFYAGLTPTLFAMFPYVGFEFMVYETLKKHVM 102
                 567899***********************99999999888.....99*****************************************9987 PP

  == domain 2  score: 65.4 bits;  conditional E-value: 3.6e-22
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH...CCCSSTTTSCSS...........HHHHHHHHHHHHHHHGGGTTHHHHHHHHHHHHHHHHHHH CS
   Mito_carr   2 elsvlkellaGglagavatlvttPldvvKtrlqt...qkksskksksaa...........ildvlkkiykeeGlrglyrGllpnllrvapasalkfvly 86 
                 ++sv+++l++G+laga+++  ++Pldvv+ r+q+   q   +k   +a+           +++ l++i k eGl  l+rGl+p++l  +p++a+  v+y
  KOO22801.1 109 QISVVAQLCIGALAGAAGQASAHPLDVVRRRMQMaflQ---KKGMVKAKvgdekkvpitnMIQGLYSIGKYEGLPMLFRGLGPACLEKVPSTAIGYVIY 204
                 6899******************************6663...3333333344467788777888888888****************************** PP

                 HHHHHHH CS
   Mito_carr  87 etlkrll 93 
                 e +k +l
  KOO22801.1 205 EAMKATL 211
                 ***9876 PP

>> DUF1072  Protein of unknown function (DUF1072)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.2      0.33   2.9e+03      21      28 ..      25      32 ..      18      39 .. 0.74
   2 ?   10.0   1.1   6.8e-05      0.61      11      32 ..     101     122 ..     100     129 .. 0.89

  Alignments for each domain:
  == domain 1  score: -1.8 bits;  conditional E-value: 0.33
     DUF1072 21 gavagcCv 28
                g +ag+C+
  KOO22801.1 25 GGIAGMCA 32
                56788884 PP

  == domain 2  score: 10.0 bits;  conditional E-value: 6.8e-05
     DUF1072  11 vLalTvlagigavagcCvGCis 32 
                 v+a+T l+ i++va +C+G + 
  KOO22801.1 101 VMASTGLTQISVVAQLCIGALA 122
                 79*****************875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (214 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       354  (0.0197445); expected 358.6 (0.02)
Passed bias filter:                      249  (0.0138881); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.41u 0.24s 00:00:00.64 Elapsed: 00:00:00.42
# Mc/sec: 1540.57
//
Query:       KOO22802.1  [L=425]
Description: hypothetical protein Ctob_000647 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (425 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       453  (0.0252663); expected 358.6 (0.02)
Passed bias filter:                      417  (0.0232584); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.47u 0.26s 00:00:00.73 Elapsed: 00:00:00.40
# Mc/sec: 3161.51
//
Query:       KOO22803.1  [L=286]
Description: hypothetical protein Ctob_000641 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (286 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       254  (0.014167); expected 358.6 (0.02)
Passed bias filter:                      234  (0.0130515); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.42u 0.22s 00:00:00.64 Elapsed: 00:00:00.38
# Mc/sec: 2238.69
//
Query:       KOO22804.1  [L=773]
Description: hypothetical protein Ctob_000633 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (773 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       423  (0.0235931); expected 358.6 (0.02)
Passed bias filter:                      356  (0.0198561); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.58u 0.22s 00:00:00.80 Elapsed: 00:00:00.39
# Mc/sec: 5930.04
//
Query:       KOO22805.1  [L=753]
Description: DNA excision repair protein ercc-6 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.5e-62  209.8   0.0    7.4e-62  209.1   0.0    1.2  1  SNF2_N      SNF2 family N-terminal domain
    2.4e-18   66.5   0.7    9.6e-18   64.6   0.0    2.4  3  Helicase_C  Helicase conserved C-terminal domain
    1.1e-07   32.1   0.0    2.7e-07   30.8   0.0    1.7  1  ResIII      Type III restriction enzyme, res subunit
     0.0035   17.1   0.0     0.0063   16.3   0.0    1.4  1  DEAD        DEAD/DEAH box helicase
     0.0072   16.1   0.1      0.044   13.6   0.1    2.2  2  T2SSM_b     Type II secretion system (T2SS), protein M subtyp
  ------ inclusion threshold ------
       0.14   11.3   0.0       0.74    8.9   0.0    2.1  2  HDA2-3      Class II histone deacetylase complex subunits 2 a


Domain annotation for each model (and alignments):
>> SNF2_N  SNF2 family N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  209.1   0.0   2.5e-65   7.4e-62      52     349 ..     116     401 ..     104     402 .. 0.87

  Alignments for each domain:
  == domain 1  score: 209.1 bits;  conditional E-value: 2.5e-65
                 HHTT--EEE---TTS--HHHHHHHHH...HHTTTS---.......S-EEEE--HHHHHHHHHHHHHH-TTS.-EEE--SSHHHH...------------ CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxx...xxxxxxxxxxxx RF
      SNF2_N  52 kqsvrGGiLaDemGLGKTvqvlalilaqrakeekdkekkrkdtlagptLivvPaslldqWeneierhvsss.alrvlvyggqkk...mkkkntkvapkl 146
                 + ++ GGi+ DemGLGKT+qv++li+   + +++++         gp Liv+Pa++l+qW++e+++++++  ++ +l+ +g+     ++ + + v ++ 
  KOO22805.1 116 HDQHVGGIIGDEMGLGKTLQVISLIA---SLHHSER--------GGPCLIVAPATVLRQWQREFRNWAPELmTVAILHSSGGADqhgRVAMVRDVCRQG 203
                 67899*********************...5455444........69***********************972455555555544566344444555555 PP

                 -----...EEEE-HHHHHHHT......TTS-S-S-SEEEES-GGGT--TTSHHHHHHHH---S-EEEE-S--SSS-HHHHHHHHHHH-TTTT--HHHHH CS
                 xxxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
      SNF2_N 147 ladyd...vvittYdvlsreaelqkkrsvlkqvewkrvvlDEghtlknstskaaeavskLstsnrwiltGTPiqnsledlygLlkfLreepfgekqtfd 242
                 lad +   v+it+Y++++ +a       vl +++w +vvlDEgh+++n +++++ ++++++t +r+iltG Piqn+l++l++L++f+ ++++g+  +f+
  KOO22805.1 204 LADGGgcsVLITSYEMMRVHA------AVLLAQRWLYVVLDEGHKIRNPDAEITLVAKRFNTGHRLILTGAPIQNKLAELWSLFDFVYPGKLGTLPMFE 296
                 66653444**********666......9*********************************************************************** PP

                 HHTHHHHH............HHHHHHHHHHHTT-STTEE---GGGT--S---EEEEEEEEE--HHHHHHHH....................HHHHHH-H CS
                 xxxxxxxx............xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
      SNF2_N 243 kllqrpie............aqaekgrsrLlqllqrlmlrrakkdveknlPpkteeiiflklskverksYnrllevlrkkalakllkrseaalksssks 329
                 +++  pi             + a +++  L++l+++++lrr+k dv+  lP k+e+++f++l++++r +Y+    +lr++ ++k+l+ +  a+ + s  
  KOO22805.1 297 EQFALPISqgayanasnfkvQAAFQCSLVLRDLIRPYLLRRTKVDVQLPLPSKSEQVLFCQLTEEQRDVYE---RFLRTDLVQKVLQGRANAFAALS-- 390
                 ******************999999999********************************************...88999999999998766665444.. PP

                 HH-HHHHHHHHHHHHH---X CS
                 xxxxxxxxxxxxxxxxxxxx RF
      SNF2_N 330 kekilelllelrqacnhpql 349
                          +l ++cnhp l
  KOO22805.1 391 ---------SLLKVCNHPHL 401
                 .........66677777665 PP

>> Helicase_C  Helicase conserved C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   1.7       4.3   1.3e+04      98     110 ..      58      70 ..      54      71 .. 0.84
   2 ?   -2.8   0.0       2.7     8e+03       6      50 ..     139     185 ..     135     199 .. 0.62
   3 !   64.6   0.0   3.2e-21   9.6e-18       7     111 .]     454     561 ..     448     561 .. 0.86

  Alignments for each domain:
  == domain 1  score: -3.5 bits;  conditional E-value: 4.3
                 HHHHHHHTTSSST CS
  Helicase_C  98 tsyiqriGRtgRa 110
                 ++ +qr+ Rt+R 
  KOO22805.1  58 SQRQQRRERTARL 70 
                 5779*******96 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 2.7
                 HHHHHHHTTTTSEEEEEESSHH..HHHHHHHHHHHT....TSTEEEESTTS CS
  Helicase_C   6 llellkleeeggkilifvntid..rlekvklllekk....gikvavlhgel 50 
                 l++ l+++e+gg +li+++ +   +    + +  ++     ++va+lh++ 
  KOO22805.1 139 LIASLHHSERGGPCLIVAPATVlrQ--WQREF--RNwapeLMTVAILHSSG 185
                 4555578888888888888877432..23445..22334457777777764 PP

  == domain 3  score: 64.6 bits;  conditional E-value: 3.2e-21
                 HHHH.HHTTTTSEEEEEESSHHHHHH..HHHHHHHTTSTEEEESTTSTHHHHHHHHHHHHTTSSS..EEEESGGGTSSSTSTTESEEEESSSSSSHHHH CS
  Helicase_C   7 lell.kleeeggkilifvntidrlek..vklllekkgikvavlhgelpqnereeileqfnkgesd..vLiatdvaerGidipkvnlVinfdlprnvtsy 100
                  ++l + +++g+++lif++t+++l+    ++l    g+++ +l+g++p   r++ +++fn+++s   +L++t++++ Gi+++++n V  +d+++n+++ 
  KOO22805.1 454 RQILlTWQQRGDRALIFCQTKQMLDIvqGHVL--GAGYTFRRLDGSTPVGVRLQLIDEFNSDDSIflFLLTTRAGGLGINLTGANRVLLVDPDWNPAND 550
                 55645899****************65433333..459***********************655443799****************************** PP

                 HHHHTTSSSTT CS
  Helicase_C 101 iqriGRtgRag 111
                 +q++ R++R+g
  KOO22805.1 551 MQARERAHRMG 561
                 *********86 PP

>> ResIII  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.8   0.0     9e-11   2.7e-07       6     169 ..     103     269 ..      98     271 .. 0.82

  Alignments for each domain:
  == domain 1  score: 30.8 bits;  conditional E-value: 9e-11
                 HHHHHHHHHHT......TTSEEEEEESTTSTHHHHHHHHHHHH-S.....-EEEEESSHHHHHHHHHHGGGGTGG....GEEEESSS-B--........ CS
      ResIII   6 eyQeeaienlleklkskrdkrglikmaTGtGKTlvaaklierllkkgkeekflflvprkslleqtleefkkflseaykeigkkvsgdkkka........ 96 
                 e+Q  ++e l   l+ +++  g+i  + G GKTl  ++li++l+++++   +l+++p  ++l q+++ef+++++e  + +    sg  +++        
  KOO22805.1 103 EHQRLCLEWL-CGLH-DQHVGGIIGDEMGLGKTLQVISLIASLHHSERGGPCLIVAPA-TVLRQWQREFRNWAPELMTVAILHSSGGADQHgrvamvrd 198
                 5555544444.4665.77789999999*******************999999999996.6899***********9987655555555555577888888 PP

                 ...........-SEEEEEHHHHHHTH........HHHTTT-SEEEEETGGGTTS.T.TTHHHHHT---SEEEEEESS- CS
      ResIII  97 ....kekdstnkkilvttiqsldadseeeeeeseellrdrfdviiiDEaHrlgakk.swreilekfkeavllglTATp 169
                        d   +++l+t+++++  +          ll +r ++++ DE H+++  + +++ +++ f+   +l lT+ p
  KOO22805.1 199 vcrqGLADGGGCSVLITSYEMMRVHA-------AVLLAQRWLYVVLDEGHKIRNPDaEITLVAKRFNTGHRLILTGAP 269
                 88777788899***********9999.......99******************9744888899999999999999887 PP

>> DEAD  DEAD/DEAH box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.0   2.1e-06    0.0063      19     135 ..     124     245 ..     102     268 .. 0.74

  Alignments for each domain:
  == domain 1  score: 16.3 bits;  conditional E-value: 2.1e-06
                 EEESTTSSHHHHHHHHHHHHHHHSTTSTS-EEEEEESSHHHHHHHHHHHHHHTTTSTSEEEEEETTSSHHHHHHHH............HTT.CSEEEEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx............xxx.xxxxxxx RF
        DEAD  19 vaaeTGsGKTlaflipvlqivyetkgktgpkalivePtreLaeqtlnnlkkfkkyidlrvlliiggvaardqlskl............dng.vdivvgt 104
                 +  e G GKTl  +i +++++ +  +++g  +liv+P + L +q  ++++++  +  l +++i++++   dq+ ++            d g + ++++ 
  KOO22805.1 124 IGDEMGLGKTLQ-VISLIASLHH--SERGGPCLIVAPATVL-RQWQREFRNWAPE--LMTVAILHSSGGADQHGRVamvrdvcrqglaDGGgCSVLITS 216
                 56688*****98.7788878865..89999********998.7899999999997..44444544444444444444447777666654336*****99 PP

                 HHHHHHHHHCTSSHCTTEEEEEEETHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD 105 pgrlddllstgklnlsqvrflVlDEadrlld 135
                  +++  +     l  ++  ++VlDE +++ +
  KOO22805.1 217 YEMMRVHAA--VLLAQRWLYVVLDEGHKIRN 245
                 999998775..55689999********9876 PP

>> T2SSM_b  Type II secretion system (T2SS), protein M subtype b
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.0      0.54   1.6e+03      63      88 ..     138     163 ..     131     179 .. 0.71
   2 !   13.6   0.1   1.5e-05     0.044       9      50 ..     682     723 ..     674     730 .. 0.88

  Alignments for each domain:
  == domain 1  score: -1.1 bits;  conditional E-value: 0.54
     T2SSM_b  63 aLqklLasLeaqrPflfVDelsvqas 88 
                 +L++ L+  e++ P+l+V  + v ++
  KOO22805.1 138 SLIASLHHSERGGPCLIVAPATVLRQ 163
                 4566666669999****988887755 PP

  == domain 2  score: 13.6 bits;  conditional E-value: 1.5e-05
     T2SSM_b   9 gataslagaalqqrvralvsaaggsltssqvlpageegkvrr 50 
                 + ++ +a+a+l++r+ + + a +g++ts q++++ ++++v+r
  KOO22805.1 682 TDSPDAAAARLLRRLDDFFAARHGKCTSEQLVKEFADASVDR 723
                 668899***************************999998876 PP

>> HDA2-3  Class II histone deacetylase complex subunits 2 and 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.0      0.71   2.1e+03      55      68 ..     389     402 ..     355     403 .. 0.70
   2 ?    8.9   0.0   0.00025      0.74      89     149 ..     446     502 ..     443     597 .. 0.72

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 0.71
                 H.HHHHHHH-GGGT CS
      HDA2-3  55 lenlslvanHPsLL 68 
                 l  l  v nHP LL
  KOO22805.1 389 LSSLLKVCNHPHLL 402
                 45677889999998 PP

  == domain 2  score: 8.9 bits;  conditional E-value: 0.00025
                 T-HHHHHHHHHHHHHTTSS....EEEEEEE-STHHHHHHHHHHTTSSSEEEESSS--S--S CS
      HDA2-3  89 tSgKFkvlndlvnliierkrksslnvlvvakskkeldLiEalllGkklkikrysgeklyde 149
                  SgK+ v+++++ + ++r        l+ ++ k+ ld++ + +lG + +++r++g +  + 
  KOO22805.1 446 LSGKMVVMRQILLTWQQRG----DRALIFCQTKQMLDIVQGHVLGAGYTFRRLDGSTPVGV 502
                 79**********9999999....7789999999999*****************99875555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (753 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       491  (0.0273858); expected 358.6 (0.02)
Passed bias filter:                      409  (0.0228122); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.63u 0.27s 00:00:00.90 Elapsed: 00:00:00.42
# Mc/sec: 5326.75
//
Query:       KOO22806.1  [L=1171]
Description: hypothetical protein Ctob_000639 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    2.7e-24   85.9   0.0    4.9e-24   85.0   0.0    1.3  1  Pkinase_Tyr  Protein tyrosine kinase
      2e-22   79.8   0.0    4.3e-22   78.7   0.0    1.4  1  Pkinase      Protein kinase domain
  ------ inclusion threshold ------
      0.023   14.5   0.0      0.071   13.0   0.0    1.8  1  PDZ_6        PDZ domain


Domain annotation for each model (and alignments):
>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   85.0   0.0   8.3e-28   4.9e-24       4     176 ..     494     674 ..     492     679 .. 0.80

  Alignments for each domain:
  == domain 1  score: 85.0 bits;  conditional E-value: 8.3e-28
                  EEEEEEESSEEEEEEEEETTTTSSEEEEEEEEE..STTSSHHHHHHHHHHHHHHHTS-BTTB--EEEEEE.SSSSEEEEEE--TTEBHHHHHHHT... CS
  Pkinase_Tyr   4 gkklGeGafGkVvegtlkgekekkevkVavKtl..keeateeekeelleeakimkklkhpnivkllgvct.keepllivteyvkgGdLlkfLrkk... 95 
                  +++l++GafG+V  +tl+  +e  ++++avK+   +++    e  +ll+e ++m k++hpnivk+ g+      ++ +++e++k  +L++ ++++   
   KOO22806.1 494 QTTLAKGAFGTVALATLS--RELGRMQCAVKIAdvRSGDGLGEALALLNEGSFM-KINHPNIVKMFGITFnAPAKIGLIMELMKC-SLHELIHAQals 587
                  5789**************..89999999999983345555667899999*9998.59************95666799******86.8*****999998 PP

                  ..CTTTSBHHHHHHHHHHHHHHHHHHHHTTEEEST-SGGGEEEEETTEEEE-STTTHEETTTSSEE..EETTSST..SGGGGS-HHH CS
  Pkinase_Tyr  96 ..ekekltlkdllsfalqvAkGmeyLeskklvHrdlaarNvLlsenkvvkisDfGLardiekddey..vkkeeak..lpvkWmapEs 176
                    ++  +  ++ll +a+++A Gm +L+ ++l+Hrdl   NvLl+++ ++k++DfG ++++e   +   +++++++      +++pE+
   KOO22806.1 588 gaRRYVTWADSLLAIATDIAFGMTFLHYHNLIHRDLKPLNVLLNDGWMAKVADFGEMKRVEGGGDAdaRAAGSGRihGTPSYVSPEA 674
                  8444445566799******************************************99888544333113333333113445666665 PP

>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   78.7   0.0   7.2e-26   4.3e-22       6     168 ..     496     674 ..     493     680 .. 0.86

  Alignments for each domain:
  == domain 1  score: 78.7 bits;  conditional E-value: 7.2e-26
                 EEEEESSEEEEEEEETTT..TEEEEEEEEECHCHCHHHH.HHHHHHHHHHHHHSCTTB--EEEE.EEESSEEEEEEE--TTEBHHHHHH.......HHS CS
     Pkinase   6 klGeGsfGkVykaveket..gkivAvKkikkekakkkke.kkvlrEikilkklkhpnivrlyev.feekdelylvleyveggeladlle.......rkg 93 
                 +l +G+fG+V  a+ +++  + + AvK+ ++++ +   e  ++l+E +++ k++hpniv+++++ f+ + ++ l++e++++  l++l++       r+ 
  KOO22806.1 496 TLAKGAFGTVALATLSRElgRMQCAVKIADVRSGDGLGEaLALLNEGSFM-KINHPNIVKMFGItFNAPAKIGLIMELMKCS-LHELIHaqalsgaRRY 592
                 6779******99875543226789*******9999888867788998887.69*********97367799**********87.8888886666675555 PP

                 S--HHHHHHHHHHHHHHHHHHHHTTEE-SS-SGGGEEEETTTEEEE-SGTTSEESSSSCS.......BCTTTSCGGGS-HHH CS
     Pkinase  94 slseeeakkiakqilegleylHskgiiHrDlKpeNiLidekgelKitDFGlakelesssk.......ltsfvgtseYlAPEv 168
                 +   + +  ia+ i+ g+ +lH +++iHrDlKp N+L+++  + K++DFG  k++e + +          + gt+ Y++PE 
  KOO22806.1 593 VTWADSLLAIATDIAFGMTFLHYHNLIHRDLKPLNVLLNDGWMAKVADFGEMKRVEGGGDadaraagSGRIHGTPSYVSPEA 674
                 56666899*******************************7778***************9999999999999**********6 PP

>> PDZ_6  PDZ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.0   1.2e-05     0.071       6      41 ..     171     204 ..     167     213 .. 0.82

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 1.2e-05
       PDZ_6   6 dpgsPAdrAGlrvGDiilsvNGqpveglsladvaal 41 
                 +++s A+  G+ vG ii ++NG++   ++++ +a++
  KOO22806.1 171 IENSLAMVLGVPVGSIIMQINGEDA--TQMKSLAEI 204
                 689*********************7..666655554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1171 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1544  (0.0861175); expected 358.6 (0.02)
Passed bias filter:                      931  (0.051927); expected 358.6 (0.02)
Passed Vit filter:                       159  (0.00886831); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 1.10u 0.30s 00:00:01.40 Elapsed: 00:00:00.45
# Mc/sec: 7769.25
//
Query:       KOO22807.1  [L=651]
Description: hypothetical protein Ctob_000638 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.062   13.4   2.6        4.1    7.6   0.1    3.8  2  HTH_28    Helix-turn-helix domain


Domain annotation for each model (and alignments):
>> HTH_28  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.7   0.3    0.0076   1.4e+02       4      22 ..     324     343 ..     323     381 .. 0.76
   2 ?    7.6   0.1   0.00023       4.1      29      49 ..     385     405 ..     382     408 .. 0.92

  Alignments for each domain:
  == domain 1  score: 2.7 bits;  conditional E-value: 0.0076
      HTH_28   4 eiikllaaGh.svreaArel 22 
                 eii+  a+Gh s r a +++
  KOO22807.1 324 EIILDKARGHmSLRSAVAAF 343
                 78888888888888877766 PP

  == domain 2  score: 7.6 bits;  conditional E-value: 0.00023
      HTH_28  29 vyrWikryeegGiagLvprrr 49 
                  y Wi r +e  +++ +pr+r
  KOO22807.1 385 FYLWIDRARERREDAAKPRPR 405
                 699****************99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (651 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       555  (0.0309554); expected 358.6 (0.02)
Passed bias filter:                      387  (0.0215851); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.59u 0.27s 00:00:00.86 Elapsed: 00:00:00.44
# Mc/sec: 4445.34
//
Query:       KOO22808.1  [L=178]
Description: hypothetical protein Ctob_000632 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.33   10.8   4.1        0.6   10.0   4.1    1.4  1  DUF4576   Domain of unknown function (DUF4576)


Domain annotation for each model (and alignments):
>> DUF4576  Domain of unknown function (DUF4576)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   4.1   3.3e-05       0.6      24      49 ..      97     122 ..      92     128 .. 0.89

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 3.3e-05
     DUF4576  24 ddkpneddkPddkPddsgknpepdfP 49 
                 +++p++d kP+ k dds+k+p pdf 
  KOO22808.1  97 AKNPKTDTKPNGKSDDSSKKPCPDFN 122
                 467889******************95 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (178 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       365  (0.0203581); expected 358.6 (0.02)
Passed bias filter:                      241  (0.0134419); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.23s 00:00:00.63 Elapsed: 00:00:00.40
# Mc/sec: 1333.66
//
Query:       KOO22809.1  [L=339]
Description: methyltransferase (contains tpr repeat) [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.3e-14   54.6   0.2    3.3e-14   53.3   0.2    1.7  1  Methyltransf_11  Methyltransferase domain
    4.9e-13   49.6   0.2    1.3e-12   48.2   0.2    1.8  1  Methyltransf_25  Methyltransferase domain
    4.7e-12   46.5   0.8    1.5e-11   44.9   0.0    2.1  2  Methyltransf_12  Methyltransferase domain
    9.7e-12   45.0   0.0    1.5e-11   44.4   0.0    1.4  1  Methyltransf_23  Methyltransferase domain
    7.3e-11   42.1   0.0    1.4e-10   41.1   0.0    1.5  1  Methyltransf_31  Methyltransferase domain
     0.0001   22.0   0.0    0.00025   20.7   0.0    1.5  1  NodS             Nodulation protein S (NodS)
     0.0088   15.4   0.0      0.015   14.7   0.0    1.3  1  Ubie_methyltran  ubiE/COQ5 methyltransferase family


Domain annotation for each model (and alignments):
>> Methyltransf_11  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.3   0.2   1.3e-17   3.3e-14       1      96 []     168     264 ..     168     264 .. 0.85

  Alignments for each domain:
  == domain 1  score: 53.3 bits;  conditional E-value: 1.3e-17
                      EEET-TTSHHHHHHHHTT.SEEEEEES-HHHHHHHHHHCCHHT-..EEEETTEECCCTSS-TT-EEEEEEES-CCC-CCHHHHHHHHHHHEEEE CS
  Methyltransf_11   1 LdvGcGtGrlaealakrg.arvvgvDlskemlklakekaseegl..kvefvvadaeklpfednsfDlvvssevlhhvedpekalkeiaRvLkpg 91 
                      +d+GcGtG+ a++l  r+ +r++g+Dls +m++ a++k    ++     + +  + +  +e +s Dl+++  vl ++ d+ +++  +aR L+pg
       KOO22809.1 168 VDLGCGTGLAAAQLRGRClGRLIGCDLSGRMIREARKKRGVFDEleA--CDCVAFLQRRVEASSADLIIAADVLLYFRDLTDLFTSVARALQPG 259
                      59*************9999*************999766665554343..4444444556999******************************** PP

                      EEEEE CS
  Methyltransf_11  92 Gllvi 96 
                      Gl+v+
       KOO22809.1 260 GLFVF 264
                      ***97 PP

>> Methyltransf_25  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.2   0.2   5.2e-16   1.3e-12       2      97 .]     168     260 ..     167     260 .. 0.88

  Alignments for each domain:
  == domain 1  score: 48.2 bits;  conditional E-value: 5.2e-16
                      EEET-TTSHHHHHHHCTSTSSEEEEEESSHHHHHHHHHHHHHTTTTEEEEESBCCGB.S..SSTTTEEEEEEESTGGGSSHHHHHHHHHHHHHH CS
  Methyltransf_25   2 LdlGcGtGrltlalakrlgkakvtgvDiseemleaareraeeeglnvefvqgdaedl.p..fedgsfDlvvssgalhhlsdedlekalkeiarv 92 
                      +dlGcGtG  +++l  r+  ++++g+D+s +m+++ar++    g+  e++ +d+ ++ +   e++s Dl++++ +l ++   dl +++  +ar+
       KOO22809.1 168 VDLGCGTGLAAAQLRGRC-LGRLIGCDLSGRMIREARKKR---GVFDELEACDCVAFlQrrVEASSADLIIAADVLLYFR--DLTDLFTSVARA 255
                      7****************9.69*****************99...7877778888855312337999*******98899997..899********* PP

                      EEEEE CS
  Methyltransf_25  93 LkpgG 97 
                      L+pgG
       KOO22809.1 256 LQPGG 260
                      ****9 PP

>> Methyltransf_12  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   0.2      0.92   2.4e+03      33      71 ..      26      63 ..      22      92 .. 0.68
   2 !   44.9   0.0   5.9e-15   1.5e-11       1      99 []     168     262 ..     168     262 .. 0.92

  Alignments for each domain:
  == domain 1  score: -0.6 bits;  conditional E-value: 0.92
  Methyltransf_12 33 iedakeklakrennnnnnvelealdlldldggssfDlvv 71
                     ie+ k++l + e++  ++ + +++ ++   ++  + +v 
       KOO22809.1 26 IEALKRRLPSLEGKAQKKERAKVNKDIYNLEN-DVSYVA 63
                     56667777777777777777776666655544.444444 PP

  == domain 2  score: 44.9 bits;  conditional E-value: 5.9e-15
  Methyltransf_12   1 LeiGcGtGsllralleklpdieytgvDispsai.edakeklakrennnnnnvelealdlldldggssfDlvvasnvlhhlkdirevldnirklL 93 
                      +++GcGtG  ++ l+ +    +++g+D+s ++i e++k++  + e + +++v + ++ ++ +    s Dl++a++vl +++d+ +++ +++++L
       KOO22809.1 168 VDLGCGTGLAAAQLRGR-CLGRLIGCDLSGRMIrEARKKRGVFDELEACDCVAFLQRRVEAS----SADLIIAADVLLYFRDLTDLFTSVARAL 256
                      59************999.888999*********7777888889999999*******999865....**************************** PP

  Methyltransf_12  94 kpgGrl 99 
                       pgG +
       KOO22809.1 257 QPGGLF 262
                      ****75 PP

>> Methyltransf_23  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.4   0.0   5.9e-15   1.5e-11      11     122 ..     145     269 ..     124     336 .. 0.77

  Alignments for each domain:
  == domain 1  score: 44.4 bits;  conditional E-value: 5.9e-15
  Methyltransf_23  11 dklerllpk..lragg.....rvLdiGcGtGillevlrengf.svtgvDlspeaveiaekakkaqkdqfdeqeaaepqg.....kfdlIvlrev 91 
                      +kle ll++   +++g       +d+GcGtG  +  lr +    ++g Dls +++ +a+k++  +++ +  ++ a+ q+     + dlI++ +v
       KOO22809.1 145 QKLEALLARdyANEDGsvsshLAVDLGCGTGLAAAQLRGRCLgRLIGCDLSGRMIREARKKRGVFDELEACDCVAFLQRrveasSADLIIAADV 238
                      566666655222333345544568*******888888777668****************9999999999999888877778888********** PP

  Methyltransf_23  92 lehvpdppellrqiatllkpgGylllsepla 122
                      l  ++d++ l++++a+ l pgG++++s+ la
       KOO22809.1 239 LLYFRDLTDLFTSVARALQPGGLFVFSTELA 269
                      ***************************9654 PP

>> Methyltransf_31  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.1   0.0   5.5e-14   1.4e-10       8     112 ..     168     267 ..     163     320 .. 0.83

  Alignments for each domain:
  == domain 1  score: 41.1 bits;  conditional E-value: 5.5e-14
  Methyltransf_31   8 lDlGCGtGeltfelaeelgpkaevvGiDiseeaielArenaqklgldnveFeqgdiee.lekl.ledekfDlilsnevlnaladpdkileeier 99 
                      +DlGCGtG  + +l  +    ++++G D s ++i+ Ar++  +  +d  e+e++d  + l+   +e ++ Dli++ +vl ++ d+ + + ++ r
       KOO22809.1 168 VDLGCGTGLAAAQLRGRC--LGRLIGCDLSGRMIREARKK--RGVFD--ELEACDCVAfLQ-RrVEASSADLIIAADVLLYFRDLTDLFTSVAR 254
                      7******99999999743..478****************4..66788..666777777445.44888*************************** PP

  Methyltransf_31 100 vlkpggilliedp 112
                      +l+pgg ++ ++ 
       KOO22809.1 255 ALQPGGLFVFSTE 267
                      ********98765 PP

>> NodS  Nodulation protein S (NodS)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.7   0.0   9.7e-08   0.00025      39     146 ..     157     266 ..     145     272 .. 0.81

  Alignments for each domain:
  == domain 1  score: 20.7 bits;  conditional E-value: 9.7e-08
        NodS  39 laqgsiadal..evGcaaGalterlapyc.krltvvdvveeaiararervkesshisw..ivsdvqqfstdekfdlivvaevlyyiedvaelraavrnl 132
                  ++gs+++ l  ++Gc +G  + +l   c  rl   d+  + i  ar++     ++     v+ +q+       dli+ a+vl y +d+++l ++v   
  KOO22809.1 157 NEDGSVSSHLavDLGCGTGLAAAQLRGRClGRLIGCDLSGRMIREARKKRGVFDELEAcdCVAFLQRRVEASSADLIIAADVLLYFRDLTDLFTSVA-- 253
                 56788888552267***********9999569************999987766666541156677888888999******************98875.. PP

        NodS 133 vsllapdgqlvfGs 146
                  + l+p+g +vf +
  KOO22809.1 254 -RALQPGGLFVFST 266
                 .7789999999965 PP

>> Ubie_methyltran  ubiE/COQ5 methyltransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   0.0   5.7e-06     0.015      47     150 ..     163     263 ..     123     269 .. 0.80

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 5.7e-06
                      -TTEEEEES-TT-HHHHHHHHHHHHHHEEEEEES-HHHHHHHHHHHHHHTSSTEEEEE--TT.T-TTS-T-EEEEEEES-GGG-S-HHHHHHHH CS
  Ubie_methyltran  47 rgakvlDvagGtgDlafklsdsvgekgkvvvlDinenmLkvgekklkeegkinieflqanae.eLpfeddsfDvvtvsfGlrnvtDklkaLkea 139
                      +++ ++D+ +Gtg  a++l       g+++++D++  m+++++kk     + ++e     a  +   e  s D++  +  l  + D +  + ++
       KOO22809.1 163 SSHLAVDLGCGTGLAAAQLRGR--CLGRLIGCDLSGRMIREARKKR--GVFDELEACDCVAFlQRRVEASSADLIIAADVLLYFRDLTDLFTSV 252
                      455789**********999865..5799*************99874..3344555444444313345568899999898999999999999999 PP

                      HHHEEEEEEEE CS
  Ubie_methyltran 140 yrvlkpGGrlv 150
                       r l+pGG +v
       KOO22809.1 253 ARALQPGGLFV 263
                      99****99876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (339 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1100  (0.0613531); expected 358.6 (0.02)
Passed bias filter:                      737  (0.0411066); expected 358.6 (0.02)
Passed Vit filter:                        80  (0.00446204); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.51u 0.27s 00:00:00.78 Elapsed: 00:00:00.40
# Mc/sec: 2539.33
//
Query:       KOO22810.1  [L=230]
Description: hypothetical protein Ctob_000634 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (230 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       227  (0.0126611); expected 358.6 (0.02)
Passed bias filter:                      199  (0.0110993); expected 358.6 (0.02)
Passed Vit filter:                        12  (0.000669307); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.41u 0.25s 00:00:00.65 Elapsed: 00:00:00.41
# Mc/sec: 1694.69
//
Query:       KOO22811.1  [L=515]
Description: hypothetical protein Ctob_000637 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (515 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       465  (0.0259356); expected 358.6 (0.02)
Passed bias filter:                      380  (0.0211947); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.49u 0.26s 00:00:00.75 Elapsed: 00:00:00.41
# Mc/sec: 3743.03
//
Query:       KOO22812.1  [L=1937]
Description: hypothetical protein Ctob_000636 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1937 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       687  (0.0383178); expected 358.6 (0.02)
Passed bias filter:                      279  (0.0155614); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.95u 0.27s 00:00:01.22 Elapsed: 00:00:00.46
# Mc/sec: 12637.71
//
Query:       KOO22813.1  [L=543]
Description: hydroxymethylglutaryl- synthase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.9e-45  154.9   0.0    3.1e-45  154.1   0.0    1.3  1  HMG_CoA_synt_N  Hydroxymethylglutaryl-coenzyme A synthase N t
    1.8e-31  109.8   0.0    3.3e-29  102.4   0.0    2.2  1  HMG_CoA_synt_C  Hydroxymethylglutaryl-coenzyme A synthase C t


Domain annotation for each model (and alignments):
>> HMG_CoA_synt_N  Hydroxymethylglutaryl-coenzyme A synthase N terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  154.1   0.0   3.5e-49   3.1e-45      14     174 .]       7     165 ..       3     165 .. 0.95

  Alignments for each domain:
  == domain 1  score: 154.1 bits;  conditional E-value: 3.5e-49
  HMG_CoA_synt_N  14 lpaqyvdqaelekfdgveagkytiglgqtrmgfvsdredinslsltvvqkllertkldydaigrlevgtetiidksksvksvlmqlfeesgntdi 108
                     +p   v+ + lek +gv+ gkyt gl   +++ + + ed  s+slt  ++l+ r++++++ +g l vg+e++id++ks+ks+lm lf+e    d+
      KOO22813.1   7 VPRHAVKASTLEKAHGVD-GKYTRGLMMHEFCGTGEDEDPVSISLTATSRLMYRYNVKFEEVGMLYVGSESLIDRTKSIKSNLMMLFHEHNCYDV 100
                     78999************7.9*******9999999999********************************************************** PP

  HMG_CoA_synt_N 109 egidtlnacyggtaalfnavnwiessawdgryalvvagdiaiydsgnarptggagavalligpdap 174
                     eg dt nacyggtaal+n++nw+ s awdgr a+ va dia  ++g    t g+ +va+l+g dap
      KOO22813.1 101 EGSDTYNACYGGTAALLNTINWLTSPAWDGRWAIAVATDIADSPEGYRFMT-GCACVAMLVGVDAP 165
                     *********************************************986666.5678********98 PP

>> HMG_CoA_synt_C  Hydroxymethylglutaryl-coenzyme A synthase C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  102.4   0.0   3.7e-33   3.3e-29       3     278 ..     168     413 ..     166     415 .. 0.85

  Alignments for each domain:
  == domain 1  score: 102.4 bits;  conditional E-value: 3.7e-33
                     E-TT--EEEE----SEE--.-TT-S--EE-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH------GGG-SEEEE--SS.HHHHHHHHHHHHHHHH CS
  HMG_CoA_synt_C   3 fdrklrashmehayDFykP.dlaseYPvvDGklslscYlkaldrcYksyskkvkkitkdadkeftlddfdyvifhsPf.cklvqkslarllynDf 95 
                     f+ + ra+hm + +DFykP       P+vDG  s++ Y + ld c + ++++          ++++++ d++ifh     k+v+ ++ r   n +
      KOO22813.1 168 FE-RERAAHMINRWDFYKPwGWHEMAPIVDGPGSIDVYYECLDGCQRDLMERR-G------ISNVIEESDFCIFHLGSgPKFVKHAFERCQANAM 254
                     66.459*************6666667**********************99993.4......459***********87626*******99988877 PP

                     HH.S-HHHHHHH-GGGGGGTT--GGGGGT-HHHHHHHHHHHHHHHHHHTGGGGHHHHHH---GGGHHHHHHHHHHHH...S-HHHHTT-EEEEEE CS
  HMG_CoA_synt_C  96 lanassdkeeevkekleekddlkldesltdkdlekallkiakelfkkkvkpsllvptevGnmYtaslyaalasllsk...vsadelagkriglfs 187
                       +a +   ++ ++k + +  l +              + +  lf+kkv+psl ++ ++G  +ta+ y+ l+sll +   ++ + + gk i +fs
      KOO22813.1 255 GWHAAN---HGRTKKYDGR--LAA--------------DETTLLFDKKVAPSLRLAARIGPQHTAATYTNLTSLLIHegtMKRNAIVGKTINVFS 330
                     665442...2222222222..222..............234458*******************************9833346799********** PP

                     EETTTEEEEEEEEE-S--STTSHHHHHTTTTHHHHHHTSEEE-HHHHHHHHHHHHHHTT--SB---S-GGGS-TT-EEEEEE-TTS-EEEE CS
  HMG_CoA_synt_C 188 YGsGlaaslfslrvkqdvsedsildiakvldlkkkLdsRkevtPeefeealelrekahlkknfkpqgsidsLaegtyyLeevDdkfRRsYa 278
                     YGsG a+s++ lrv+             v d ++ Ld+R+ v  +ef +++    +++ + ++k +        g+yyL+e D+  RR+Y 
      KOO22813.1 331 YGSGAASSMYRLRVRRMPGL--------VHDAHTMLDQRHFVGAQEFDAIISEYAETYARLEWKARIRNGPQPGGVYYLHECDKYGRRAYY 413
                     **************998777........6677899*********************************99999****************95 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (543 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       320  (0.0178482); expected 358.6 (0.02)
Passed bias filter:                      296  (0.0165096); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.51u 0.28s 00:00:00.79 Elapsed: 00:00:00.45
# Mc/sec: 3659.39
//
Query:       KOO22814.1  [L=180]
Description: hypothetical protein Ctob_009224 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
      7e-13   48.8   6.6    8.5e-05   23.3   0.0    4.2  4  WD40         WD domain, G-beta repeat
    9.8e-06   25.8   0.2     0.0007   19.8   0.1    2.3  2  ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain
    7.7e-05   21.8   0.6    0.00032   19.8   0.6    1.9  1  Ge1_WD40     WD40 region of Ge1, enhancer of mRNA-decapping p


Domain annotation for each model (and alignments):
>> WD40  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.7   0.0     0.005        30      25      38 .]       2      15 ..       1      15 [. 0.93
   2 !   16.2   0.1   2.4e-06     0.014       4      38 .]      28      66 ..      25      66 .. 0.76
   3 ?    4.7   0.6     0.011        63       2      29 ..      71      98 ..      70     109 .. 0.71
   4 !   23.3   0.0   1.4e-08   8.5e-05       6      37 ..     118     150 ..     114     151 .. 0.91

  Alignments for each domain:
  == domain 1  score: 5.7 bits;  conditional E-value: 0.005
                EEEEETTSEEEEEE CS
        WD40 25 lasGsdDgtvriWd 38
                lasG+ D+ + +Wd
  KOO22814.1  2 LASGGNDNLLNVWD 15
                89***********9 PP

  == domain 2  score: 16.2 bits;  conditional E-value: 2.4e-06
                EEEEESS.SSEEEEEEETTSSEEE.EEE..TTSEEEEEE CS
        WD40  4 lrtltGH.ssvtslafspdgawla.sGs..dDgtvriWd 38
                l +   H   v +la++p ++ l+ sG+   D+ +r+W+
  KOO22814.1 28 LFVMHEHqAAVKALAWCPWQKHLLaSGGgtADRCIRFWS 66
                5566778666****99999999752764447*******5 PP

  == domain 3  score: 4.7 bits;  conditional E-value: 0.011
                EEEEEEESSSSEEEEEEETTSSEEEEEE CS
        WD40  2 qclrtltGHssvtslafspdgawlasGs 29
                q++  +++Hs v+sl +s + + l+s++
  KOO22814.1 71 QLINAIDTHSQVCSLIWSVHEHELVSSH 98
                56666789*88****8888888899874 PP

  == domain 4  score: 23.3 bits;  conditional E-value: 1.4e-08
                 EEESS.SSEEEEEEETTSSEEEEEETTSEEEEE CS
        WD40   6 tltGH.ssvtslafspdgawlasGsdDgtvriW 37 
                 +ltGH s v ++a spdg+ ++s+  D t+r+W
  KOO22814.1 118 ELTGHtSRVLHMAQSPDGTTVVSAAADETLRFW 150
                 699**777**************9988******* PP

>> ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.8   0.1   1.2e-07    0.0007      34      91 ..      31      89 ..       7      90 .. 0.81
   2 !    4.1   0.0    0.0094        56      33      65 ..     118     150 ..      99     165 .. 0.84

  Alignments for each domain:
  == domain 1  score: 19.8 bits;  conditional E-value: 1.2e-07
  ANAPC4_WD40 34 edkedsevrsLaWkp.dgklLav..aysdgevrlldaesgkvvhslsvksekavtclgWge 91
                  ++++  v++LaW p + +lLa   +++d  +r+ ++++g+++++++++s+  v++l W++
   KOO22814.1 31 MHEHQAAVKALAWCPwQKHLLASggGTADRCIRFWSMQTGQLINAIDTHSQ--VCSLIWSV 89
                 468999*******993456777733478999******************99..******87 PP

  == domain 2  score: 4.1 bits;  conditional E-value: 0.0094
  ANAPC4_WD40  33 eedkedsevrsLaWkpdgklLavaysdgevrll 65 
                  e +++ s+v ++a +pdg+  + a +d ++r+ 
   KOO22814.1 118 ELTGHTSRVLHMAQSPDGTTVVSAAADETLRFW 150
                  44678899*******************999875 PP

>> Ge1_WD40  WD40 region of Ge1, enhancer of mRNA-decapping protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.8   0.6   5.3e-08   0.00032     182     225 ..     117     161 ..      10     166 .. 0.66

  Alignments for each domain:
  == domain 1  score: 19.8 bits;  conditional E-value: 5.3e-08
    Ge1_WD40 182 lkieeh.sliveaafspdGtalatasedGevkffqvyledeeepr 225
                  +++ h s + + a spdGt++  a++d +++f+++  +d++ +r
  KOO22814.1 117 AELTGHtSRVLHMAQSPDGTTVVSAAADETLRFWRILGSDADARR 161
                 3444552589**************************998887665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (180 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       318  (0.0177366); expected 358.6 (0.02)
Passed bias filter:                      266  (0.0148363); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.44u 0.26s 00:00:00.70 Elapsed: 00:00:00.44
# Mc/sec: 1233.33
//
Query:       KOO22815.1  [L=693]
Description: serine threonine-protein phosphatase 2a 65 kda regulatory subunit a beta isoform-like protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.6e-37  124.3  33.6    0.00029   20.9   0.1   13.0 13  HEAT           HEAT repeat
    3.6e-24   84.9  20.9      4e-06   27.1   0.0    7.1  8  HEAT_2         HEAT repeats
    1.8e-15   56.6   3.1    3.8e-15   55.6   3.1    1.6  1  TB2_DP1_HVA22  TB2/DP1, HVA22 family
    3.3e-09   37.2   0.3      0.079   13.6   0.0    6.8  7  Vac14_Fab1_bd  Vacuolar 14 Fab1-binding region
    1.4e-07   31.8  20.5       0.16   12.5   0.7    8.0  7  HEAT_EZ        HEAT-like repeat
    8.9e-05   22.6   6.9       0.26   11.3   0.0    5.4  5  Cnd1           non-SMC mitotic condensation complex subunit 1
     0.0036   17.5   5.6         16    5.7   0.0    5.0  6  RTP1_C1        Required for nuclear transport of RNA pol II C
     0.0073   14.9   8.0        2.1    6.8   0.1    3.8  3  Adaptin_N      Adaptin N terminal region
  ------ inclusion threshold ------
      0.018   15.0   4.8        2.1    8.5   0.0    4.7  6  Arm            Armadillo/beta-catenin-like repeat
      0.061   12.9   0.3         21    4.6   0.0    3.4  3  MMS19_N        Dos2-interacting transcription regulator of RN
       0.12   10.7   5.7        1.1    7.5   3.7    2.8  2  DRIM           Down-regulated in metastasis


Domain annotation for each model (and alignments):
>> HEAT  HEAT repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.6   0.0      0.13   2.1e+02       1      30 [.     158     186 ..     158     187 .. 0.87
   2 ?    5.1   0.0     0.021        34       2      30 ..     197     225 ..     196     226 .. 0.83
   3 !   11.1   0.1   0.00023      0.38       5      29 ..     277     301 ..     273     303 .. 0.89
   4 !   16.5   0.1   4.3e-06    0.0069       1      29 [.     316     344 ..     316     346 .. 0.93
   5 !   16.5   0.0   4.3e-06     0.007       1      30 [.     355     384 ..     355     385 .. 0.93
   6 !    7.2   0.0    0.0043       6.9       1      21 [.     394     414 ..     394     421 .. 0.91
   7 !   12.2   0.1   0.00011      0.18       1      29 [.     433     461 ..     433     463 .. 0.93
   8 !   19.2   0.1   6.2e-07     0.001       1      29 [.     472     500 ..     472     502 .. 0.92
   9 !   16.0   0.2   6.4e-06      0.01       1      30 [.     511     540 ..     511     541 .. 0.94
  10 !    7.7   0.0    0.0029       4.7       5      28 ..     554     577 ..     551     580 .. 0.89
  11 ?    3.6   0.0     0.062     1e+02       1      30 [.     589     618 ..     589     619 .. 0.92
  12 !   20.9   0.1   1.7e-07   0.00029       1      30 [.     628     657 ..     628     658 .. 0.94
  13 ?   -2.0   0.1         4   6.5e+03       3      16 ..     669     682 ..     667     686 .. 0.80

  Alignments for each domain:
  == domain 1  score: 2.6 bits;  conditional E-value: 0.13
                 HHHHHHHHHT-SSHHHHHHHHHHHHHHHHC CS
        HEAT   1 llPlllkllsDpspeVReaAakaLgalaev 30 
                 l+P+l +   D++ eV  a a+ Lg+++e+
  KOO22815.1 158 LIPFLNES-IDDEDEVLLALAEELGNFVEY 186
                 68888885.799***************997 PP

  == domain 2  score: 5.1 bits;  conditional E-value: 0.021
                 HHHHHHHHT-SSHHHHHHHHHHHHHHHHC CS
        HEAT   2 lPlllkllsDpspeVReaAakaLgalaev 30 
                 l +l +l + ++  VR+ A+ +L ++a++
  KOO22815.1 197 LTPLETLATVEETVVRDKAVDSLNNVAQQ 225
                 56677777889999***********9986 PP

  == domain 3  score: 11.1 bits;  conditional E-value: 0.00023
                 HHHHHT-SSHHHHHHHHHHHHHHHH CS
        HEAT   5 llkllsDpspeVReaAakaLgalae 29 
                 +  l++D+ p VR+aA   Lg +a+
  KOO22815.1 277 FAGLCRDDTPMVRRAASAHLGLIAR 301
                 67899****************9986 PP

  == domain 4  score: 16.5 bits;  conditional E-value: 4.3e-06
                 HHHHHHHHHT-SSHHHHHHHHHHHHHHHH CS
        HEAT   1 llPlllkllsDpspeVReaAakaLgalae 29 
                 llPl+++l +D+  +VR  A++++ +l +
  KOO22815.1 316 LLPLFQQLSTDEQDSVRLLAVQNCIELGK 344
                 89*********************999976 PP

  == domain 5  score: 16.5 bits;  conditional E-value: 4.3e-06
                 HHHHHHHHHT-SSHHHHHHHHHHHHHHHHC CS
        HEAT   1 llPlllkllsDpspeVReaAakaLgalaev 30 
                 +lP+l +  +D+s++VR+ +a+ +++lae+
  KOO22815.1 355 VLPVLRTVSTDKSWRVRYVVAERFCELAEQ 384
                 699999999******************996 PP

  == domain 6  score: 7.2 bits;  conditional E-value: 0.0043
                 HHHHHHHHHT-SSHHHHHHHH CS
        HEAT   1 llPlllkllsDpspeVReaAa 21 
                 l+++++ ll+D ++eVR aA 
  KOO22815.1 394 LVNTFVALLKDVEAEVRVAAS 414
                 6899***************96 PP

  == domain 7  score: 12.2 bits;  conditional E-value: 0.00011
                 HHHHHHHHHT-SSHHHHHHHHHHHHHHHH CS
        HEAT   1 llPlllkllsDpspeVReaAakaLgalae 29 
                 ++P++ +l +D+s +VR+a a  +  +a+
  KOO22815.1 433 IVPCVRELSKDSSQHVRAALASVIMGIAP 461
                 79********************9999986 PP

  == domain 8  score: 19.2 bits;  conditional E-value: 6.2e-07
                 HHHHHHHHHT-SSHHHHHHHHHHHHHHHH CS
        HEAT   1 llPlllkllsDpspeVReaAakaLgalae 29 
                 llPl+l+ll+D+ peVR + + +L a++ 
  KOO22815.1 472 LLPLFLQLLQDDFPEVRLNLISTLHAVST 500
                 89**********************99876 PP

  == domain 9  score: 16.0 bits;  conditional E-value: 6.4e-06
                 HHHHHHHHHT-SSHHHHHHHHHHHHHHHHC CS
        HEAT   1 llPlllkllsDpspeVReaAakaLgalaev 30 
                 llP++ +l +D  ++VR a ++++  lae+
  KOO22815.1 511 LLPAISELAKDRQWRVRFAIIECIPLLAEQ 540
                 89**********************999986 PP

  == domain 10  score: 7.7 bits;  conditional E-value: 0.0029
                 HHHHHT-SSHHHHHHHHHHHHHHH CS
        HEAT   5 llkllsDpspeVReaAakaLgala 28 
                 ++++l+D+   +ReaA+ ++ +l+
  KOO22815.1 554 CISWLQDCVFTIREAAIANVRKLI 577
                 7899**************998886 PP

  == domain 11  score: 3.6 bits;  conditional E-value: 0.062
                 HHHHHHHHHT-SSHHHHHHHHHHHHHHHHC CS
        HEAT   1 llPlllkllsDpspeVReaAakaLgalaev 30 
                 llP +l   ++ +   R+++++a++ la+v
  KOO22815.1 589 LLPQVLATHTHANYLYRMTSLYAVASLAPV 618
                 7999999899*****************987 PP

  == domain 12  score: 20.9 bits;  conditional E-value: 1.7e-07
                 HHHHHHHHHT-SSHHHHHHHHHHHHHHHHC CS
        HEAT   1 llPlllkllsDpspeVReaAakaLgalaev 30 
                 llPl lkl  Dp p+VR +Aak+L +l+++
  KOO22815.1 628 LLPLALKLAADPVPNVRFNAAKTLRELVPQ 657
                 89*************************986 PP

  == domain 13  score: -2.0 bits;  conditional E-value: 4
                 HHHHHHHT-SSHHH CS
        HEAT   3 PlllkllsDpspeV 16 
                 P+l+ +  Dp+ +V
  KOO22815.1 669 PCLVVMQDDPDIDV 682
                 89999889999998 PP

>> HEAT_2  HEAT repeats
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.6   6.9e-06     0.011       3      87 ..     122     219 ..     120     220 .. 0.77
   2 !   13.9   0.1   3.2e-05     0.053       3      70 ..     157     234 ..     155     243 .. 0.85
   3 ?    4.9   0.3     0.021        34      31      59 ..     272     300 ..     239     316 .. 0.81
   4 !   19.8   0.8   4.7e-07   0.00076      11      85 ..     283     376 ..     279     379 .. 0.69
   5 !   17.9   0.4   1.9e-06    0.0031       3      82 ..     318     412 ..     316     414 .. 0.68
   6 !   14.9   0.2   1.6e-05     0.026       2      69 ..     396     474 ..     394     476 .. 0.79
   7 !   27.1   0.0   2.5e-09     4e-06       1      86 [.     473     572 ..     473     574 .. 0.81
   8 !   15.0   0.3   1.5e-05     0.025      11      76 ..     599     679 ..     589     690 .. 0.64

  Alignments for each domain:
  == domain 1  score: 16.1 bits;  conditional E-value: 6.9e-06
      HEAT_2   3 aLlqalendpdpevrraairaLg....rignpealpaLvell.ed..edpavRraaaeaLgai.....g...dpealpaLkellddddddvvReaAaea 86 
                  L+  l +  d ++r + ir L      +g +++++ L+++l e+  ++ +v  a ae Lg +     g    ++ l  L+ l++  ++ vvR +A+ +
  KOO22815.1 122 ILIDEL-KNDDIQLRLNSIRRLStiavALGVERTRDELIPFLnESidDEDEVLLALAEELGNFveyvgGsahASSLLTPLETLATV-EETVVRDKAVDS 218
                 589999.89999***********5555556679999999999743315579**********8877786332246678999998876.689******999 PP

      HEAT_2  87 L 87 
                 L
  KOO22815.1 219 L 219
                 8 PP

  == domain 2  score: 13.9 bits;  conditional E-value: 3.2e-05
      HEAT_2   3 aLlqalen..dpdpevrraairaLg........rignpealpaLvellededpavRraaaeaLgaigdpealpaLkel 70 
                  L+ +l +  d ++ev  a +++Lg        + +  ++l  L  l++ e++ vR  a+++L  ++ + + ++L+e 
  KOO22815.1 157 ELIPFLNEsiDDEDEVLLALAEELGnfveyvggSAHASSLLTPLETLATVEETVVRDKAVDSLNNVAQQLSREHLLEH 234
                 677778556788889**********888877755556688999999*********************99999999885 PP

  == domain 3  score: 4.9 bits;  conditional E-value: 0.021
      HEAT_2  31 ealpaLvellededpavRraaaeaLgaig 59 
                 e+++ +  l++d+ p+vRraa   Lg i+
  KOO22815.1 272 ELRASFAGLCRDDTPMVRRAASAHLGLIA 300
                 55566666889999999999999988775 PP

  == domain 4  score: 19.8 bits;  conditional E-value: 4.7e-07
      HEAT_2  11 dpdpevrraairaLgrignp............ealpaLvellededpavRraaaeaLgaig........dpealpaLkellddddddvvReaAae 85 
                 d  p vrraa   Lg i+               +lp++ +l +de   vR  a++   ++g        + ++lp+L+   + d++++vR  +ae
  KOO22815.1 283 DDTPMVRRAASAHLGLIARAvhacaerdqlhsALLPLFQQLSTDEQDSVRLLAVQNCIELGkllslaenHAAVLPVLRTVST-DKSWRVRYVVAE 376
                 677888888888888444444444444555547789999999************96555544444443368899***99776.566777876665 PP

  == domain 5  score: 17.9 bits;  conditional E-value: 1.9e-06
      HEAT_2   3 aLlqalendpdpevrraairaLg......ri..gnpealpaLvellededpavRraaae...aLg.aig....dpealpaLkellddddddvvRea 82 
                 +L q+l++d+ + vr  a+++        ++  ++  +lp L+ + +d++++vR+ +ae    L+ ++g    + e ++   +ll+ d +++vR a
  KOO22815.1 318 PLFQQLSTDEQDSVRLLAVQNCIelgkllSLaeNHAAVLPVLRTVSTDKSWRVRYVVAErfcELAeQMGpdvtTAELVNTFVALLK-DVEAEVRVA 412
                 799************99986544233555222234588*******************98555444245543334666777777664.567777755 PP

  == domain 6  score: 14.9 bits;  conditional E-value: 1.6e-05
      HEAT_2   2 daLlqalendpdpevrraairaLg...rignpea.....lpaLvellededpavRraaaeaLgai....gdpealpaLke 69 
                 ++++++l +d + evr aa    +   r+ +pe+     +p+++el +d++ +vR+a a  +  i    g+++++++L+ 
  KOO22815.1 396 NTFVALL-KDVEAEVRVAASFKGAgfaRMLPPELvllhiVPCVRELSKDSSQHVRAALASVIMGIaplvGRDATIEHLLP 474
                 5677888.9*******99986666477777775555555********************999766444478999999976 PP

  == domain 7  score: 27.1 bits;  conditional E-value: 2.5e-09
      HEAT_2   1 ldaLlqalendpdpevrraairaLg........rignpealpaLvellededpavRraaaeaL....gaigd...pealpaLkellddddddvvReaAa 84 
                 l+++lq+l +d +pevr + i +L         ++ + ++lpa+ el++d  ++vR a++e +     ++g    ++ l   + ++++d +  +ReaA+
  KOO22815.1 473 LPLFLQLL-QDDFPEVRLNLISTLHavstvlgvEQLSHSLLPAISELAKDRQWRVRFAIIECIpllaEQLGVeffDAKLGTMCISWLQDCVFTIREAAI 570
                 57899*99.9***************999988886666699*********************88444335664566778888888888888888888887 PP

      HEAT_2  85 ea 86 
                  +
  KOO22815.1 571 AN 572
                 65 PP

  == domain 8  score: 15.0 bits;  conditional E-value: 1.5e-05
      HEAT_2  11 dpdpevrraairaLgrignp........ealpaLvellededpavRraaaeaLgai....g....dpealpaLkellddddd 76 
                 ++++  r + + a +++++         ++lp+ ++l+ d+ p+vR +aa++L ++    +    ++++ p L   ++dd+d
  KOO22815.1 599 HANYLYRMTSLYAVASLAPVvgaellagTLLPLALKLAADPVPNVRFNAAKTLRELvpqlDaatvHERVRPCLVV-MQDDPD 679
                 555666655555555333322222344488***********************9875443233335777888885.444444 PP

>> TB2_DP1_HVA22  TB2/DP1, HVA22 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.6   3.1   2.3e-18   3.8e-15       1      77 []      22      98 ..      22      98 .. 0.89

  Alignments for each domain:
  == domain 1  score: 55.6 bits;  conditional E-value: 2.3e-18
  TB2_DP1_HVA22  1 PayaslkaleskeksdetkwltYWvvfafltvvesladvll.s.wiPfYylfKllfllwlvlpqtqgatyvYekflrpl 77
                   P y s+kal+ k +   + +l YWv+fa+++ v +l+++l+ + w+P+Yy+fK+  l++lv+ qt++at +++k++ p+
     KOO22815.1 22 PSYLSFKALNGKGEP--KALLAYWVCFAIYMQVTFLFETLClHvWVPLYYMFKVGGLCYLVASQTNAATKLFDKYIDPF 98
                   89*******877555..35******************5554246********************************997 PP

>> Vac14_Fab1_bd  Vacuolar 14 Fab1-binding region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.2   0.0      0.69   1.1e+03      10      41 ..     142     171 ..     134     191 .. 0.72
   2 ?    2.7   0.0      0.12   1.9e+02      26      67 ..     194     236 ..     173     243 .. 0.79
   3 ?    0.2   0.0      0.74   1.2e+03       8      49 ..     296     337 ..     289     346 .. 0.79
   4 !   13.6   0.0   4.9e-05     0.079      24      89 ..     351     414 ..     334     417 .. 0.79
   5 ?    5.8   0.0     0.013        20       9      85 ..     451     527 ..     443     530 .. 0.82
   6 ?    5.0   0.0     0.023        38      15      57 ..     500     540 ..     487     575 .. 0.79
   7 ?    2.2   0.0      0.17   2.8e+02       7      54 ..     609     654 ..     588     685 .. 0.64

  Alignments for each domain:
  == domain 1  score: 0.2 bits;  conditional E-value: 0.69
  Vac14_Fab1_bd  10 LaavaialekkikeyleeivkpvlkcfsDkds 41 
                    L ++a+al+  +++  +e+++ + ++++D+d+
     KOO22815.1 142 LSTIAVALG--VERTRDELIPFLNESIDDEDE 171
                    555555555..788999999998888888876 PP

  == domain 2  score: 2.7 bits;  conditional E-value: 0.12
  Vac14_Fab1_bd  26 eeivkpvlkcfsDkdsrvRyyacEslyniakv.akgevlklln 67 
                    +++++p+ +  + +++ vR  a++sl n+a++ +++++l+++ 
     KOO22815.1 194 SSLLTPLETLATVEETVVRDKAVDSLNNVAQQlSREHLLEHFV 236
                    567777777778889999***********98725677788886 PP

  == domain 3  score: 0.2 bits;  conditional E-value: 0.74
  Vac14_Fab1_bd   8 igLaavaialekkikeyleeivkpvlkcfsDkdsrvRyyacE 49 
                    +gL a a+   ++ ++  + +++   +  +D+++ vR  a+ 
     KOO22815.1 296 LGLIARAVHACAERDQLHSALLPLFQQLSTDEQDSVRLLAVQ 337
                    677777888788888888999999999999999999998875 PP

  == domain 4  score: 13.6 bits;  conditional E-value: 4.9e-05
  Vac14_Fab1_bd  24 yleeivkpvlkcfsDkdsrvRyyacEslyniakvakgevlkllneifdalvklvaDsdesvksgae 89 
                        +++++ ++ +Dk+ rvRy ++E +  +a ++  +v +   e+ +++v l+ D++++v+ +a+
     KOO22815.1 351 NHAAVLPVLRTVSTDKSWRVRYVVAERFCELAEQMGPDVTT--AELVNTFVALLKDVEAEVRVAAS 414
                    44455555555668*********************999865..688899999999*******9997 PP

  == domain 5  score: 5.8 bits;  conditional E-value: 0.013
  Vac14_Fab1_bd   9 gLaavaialekk..ikeyleeivkpvlkcfsDkdsrvRyyacEslyniakvakgevlkllneifdalvklvaDsdesvk 85 
                    +La+v ++++     +  +e++++  l+ ++D+  +vR   + +l+ ++ v+  e l++  +++ a+++l+ D +  v+
     KOO22815.1 451 ALASVIMGIAPLvgRDATIEHLLPLFLQLLQDDFPEVRLNLISTLHAVSTVLGVEQLSH--SLLPAISELAKDRQWRVR 527
                    678877777776556789999***************************99999998886..677777777777777776 PP

  == domain 6  score: 5.0 bits;  conditional E-value: 0.023
  Vac14_Fab1_bd  15 ialekkikeyleeivkpvlkcfsDkdsrvRyyacEslyniakv 57 
                      l+  +++  +++++ + +  +D++ rvR+  +E++  +a +
     KOO22815.1 500 TVLG--VEQLSHSLLPAISELAKDRQWRVRFAIIECIPLLAEQ 540
                    3333..7888999********************9998666655 PP

  == domain 7  score: 2.2 bits;  conditional E-value: 0.17
  Vac14_Fab1_bd   7 ligLaavaialekkikeyleeivkpvlkcfsDkdsrvRyyacEslyni 54 
                    l ++a++a  ++++      ++++  lk   D    vR+ a+ +l  +
     KOO22815.1 609 LYAVASLAPVVGAE--LLAGTLLPLALKLAADPVPNVRFNAAKTLREL 654
                    44444443333332..23445666666666666666666666665544 PP

>> HEAT_EZ  HEAT-like repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.0         4   6.4e+03      28      44 ..     157     172 ..     144     177 .. 0.68
   2 !    7.8   0.1     0.003       4.8      33      54 ..     277     298 ..     253     299 .. 0.78
   3 !   12.5   0.7   9.7e-05      0.16       1      49 [.     286     336 ..     286     337 .. 0.75
   4 ?    3.5   0.0     0.067   1.1e+02      28      48 ..     393     413 ..     383     415 .. 0.91
   5 !    6.4   0.1    0.0081        13      27      47 ..     431     451 ..     418     456 .. 0.84
   6 !    7.7   0.1    0.0032       5.2      17      47 ..     464     490 ..     451     495 .. 0.73
   7 ?    5.5   0.1     0.015        25       1      44 [.     641     682 ..     641     686 .. 0.69

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 4
     HEAT_EZ  28 eilpaLlalLnddsdeV 44 
                 e++p+L      d+deV
  KOO22815.1 157 ELIPFLNESID-DEDEV 172
                 67777766664.56666 PP

  == domain 2  score: 7.8 bits;  conditional E-value: 0.003
     HEAT_EZ  33 LlalLnddsdeVRaaAagaLgn 54 
                 ++ l +dd ++VR aA  +Lg 
  KOO22815.1 277 FAGLCRDDTPMVRRAASAHLGL 298
                 445559**************96 PP

  == domain 3  score: 12.5 bits;  conditional E-value: 9.7e-05
     HEAT_EZ   1 wrvRraAawaLGr......laggepellqplvpeilpaLlalLnddsdeVRaaAa 49 
                 + vRraA + LG       +++++++    l++++lp++ +l +d++d+VR  A+
  KOO22815.1 286 PMVRRAASAHLGLiaravhACAERDQ----LHSALLPLFQQLSTDEQDSVRLLAV 336
                 57899999999777544444444444....5559*****************9997 PP

  == domain 4  score: 3.5 bits;  conditional E-value: 0.067
     HEAT_EZ  28 eilpaLlalLnddsdeVRaaA 48 
                 e++  ++alL+d ++eVR aA
  KOO22815.1 393 ELVNTFVALLKDVEAEVRVAA 413
                 78999**************99 PP

  == domain 5  score: 6.4 bits;  conditional E-value: 0.0081
     HEAT_EZ  27 peilpaLlalLnddsdeVRaa 47 
                   i+p+   l +d+s++VRaa
  KOO22815.1 431 LHIVPCVRELSKDSSQHVRAA 451
                 569****************98 PP

  == domain 6  score: 7.7 bits;  conditional E-value: 0.0032
     HEAT_EZ  17 gepellqplvpeilpaLlalLnddsdeVRaa 47 
                 g++ +++     +lp++l+lL+dd +eVR +
  KOO22815.1 464 GRDATIE----HLLPLFLQLLQDDFPEVRLN 490
                 4444444....89***************975 PP

  == domain 7  score: 5.5 bits;  conditional E-value: 0.015
     HEAT_EZ   1 wrvRraAawaLGrlaggepel.lqplvpeilpaLlalLnddsd.eV 44 
                 ++vR++Aa +L    +  p+l  +++++++ p+L+  ++dd+d +V
  KOO22815.1 641 PNVRFNAAKTLR---ELVPQLdAATVHERVRPCLV-VMQDDPDiDV 682
                 68*********7...66666625556666666666.6666666465 PP

>> Cnd1  non-SMC mitotic condensation complex subunit 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.9   0.1      0.13     2e+02       3      37 ..     135     173 ..     133     249 .. 0.61
   2 ?    2.3   0.1     0.094   1.5e+02      22      58 ..     273     310 ..     252     341 .. 0.60
   3 ?    4.2   0.2     0.025        41       7      99 ..     300     396 ..     296     413 .. 0.72
   4 !   11.3   0.0   0.00016      0.26      24     105 ..     435     519 ..     427     540 .. 0.74
   5 ?    2.4   0.0     0.086   1.4e+02      30      79 ..     636     687 ..     605     691 .. 0.66

  Alignments for each domain:
  == domain 1  score: 1.9 bits;  conditional E-value: 0.13
        Cnd1   3 Ralairtlg....cirvpnlveylvepLrkrLkDedpyV 37 
                 R + ir l+    ++ v+ + ++l++ L++++ Ded+  
  KOO22815.1 135 RLNSIRRLStiavALGVERTRDELIPFLNESIDDEDEVL 173
                 777788777666677778888888888888888888754 PP

  == domain 2  score: 2.3 bits;  conditional E-value: 0.094
        Cnd1  22 lvepLrkrLkDedpyVRktaaivvakL.ilndmvkekg 58 
                 l       ++D+ p+VR+ a   +  +      + e++
  KOO22815.1 273 LRASFAGLCRDDTPMVRRAASAHLGLIaRAVHACAERD 310
                 45555566789999999888765554432222455544 PP

  == domain 3  score: 4.2 bits;  conditional E-value: 0.025
        Cnd1   7 irtlg.cirvpnlveylvepLrkrLkDedpyVRktaaivvakL..ilndmvkekgflselaklleDenprVvanalaalteisek.senaiynllpd 99 
                  r+   c   ++l  +l++  ++  +De+  VR  a+  +++L  +l        +l  l++  +D++ rV+  +   ++e++e+ +++ +   l +
  KOO22815.1 300 ARAVHaCAERDQLHSALLPLFQQLSTDEQDSVRLLAVQNCIELgkLLSLAENHAAVLPVLRTVSTDKSWRVRYVVAERFCELAEQmGPDVTTAELVN 396
                 55665566777777777777788889***********999999955555555555999999999999999999999999999999755444333333 PP

  == domain 4  score: 11.3 bits;  conditional E-value: 0.00016
        Cnd1  24 epLrkrLkDedpyVRktaaivvakL...ilndmvkekgflselaklleDenprVvanalaalteisek.senaiynllpdiiskls 105
                 + +r+  kD++++VR   a v+  +   + +d  + + +l  +++ll+D+ p+V+ n ++ l+ +s+  + +++  +l   is l 
  KOO22815.1 435 PCVRELSKDSSQHVRAALASVIMGIaplVGRDATI-EHLLPLFLQLLQDDFPEVRLNLISTLHAVSTVlGVEQLSHSLLPAISELA 519
                 56778889*******98765554444428888776.568*************************9998754555555555555554 PP

  == domain 5  score: 2.4 bits;  conditional E-value: 0.086
        Cnd1  30 LkDedpyVRktaaivvakL.ilndmvkekg.flselaklleDenprVvanal 79 
                   D+ p VR +aa ++ +L  + d   + + +   l  + +D++  V++ a+
  KOO22815.1 636 AADPVPNVRFNAAKTLRELvPQLDAATVHErVRPCLVVMQDDPDIDVSDFAR 687
                 3688999999999999999734444444442445555555777777777765 PP

>> RTP1_C1  Required for nuclear transport of RNA pol II C-terminus 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.0   0.0     0.016        27      43     110 ..     121     188 ..      72     190 .. 0.82
   2 ?   -3.9   0.0       9.8   1.6e+04      15      33 ..     211     229 ..     206     236 .. 0.71
   3 ?    0.0   0.1      0.57   9.3e+02      13     110 ..     286     386 ..     278     411 .. 0.60
   4 ?    5.7   0.0      0.01        16      34      95 ..     465     527 ..     434     543 .. 0.70
   5 ?   -2.0   0.0       2.4   3.9e+03       6      28 ..     556     578 ..     553     600 .. 0.74
   6 ?    4.8   0.0     0.018        30       4      39 ..     632     664 ..     629     679 .. 0.77

  Alignments for each domain:
  == domain 1  score: 5.0 bits;  conditional E-value: 0.016
     RTP1_C1  43 kllleaLkdedsYvYLnaikgLvaLadvfpeevl.klLleeyeeenekeslderlkvGEaLlrvirrlg 110
                  +l++ Lk++d  + Ln+i+ L+++a +   e + ++L+    +e+ + + +  l ++E L ++++ +g
  KOO22815.1 121 AILIDELKNDDIQLRLNSIRRLSTIAVALGVERTrDELIPFL-NESIDDEDEVLLALAEELGNFVEYVG 188
                 688899999999999999999999998886555514555444.66777777888899999999888776 PP

  == domain 2  score: -3.9 bits;  conditional E-value: 9.8
     RTP1_C1  15 vrahglvlLrkliekkske 33 
                 vr +++ +L++++++ s+e
  KOO22815.1 211 VRDKAVDSLNNVAQQLSRE 229
                 7777888888887777654 PP

  == domain 3  score: 0.0 bits;  conditional E-value: 0.57
     RTP1_C1  13 lpvrahglvlLrkliekkske..avldiekilkllleaLkdedsYvYLnaikgLvaLadvfp.eevlklLleeyeeenekeslderlkvGEaLlrvirr 108
                 + vr  +   L  ++++ +++    +  +++l l+++  +de + v L a++   +L++  + +e    +l   +++++++s   r  v+E + +++++
  KOO22815.1 286 PMVRRAASAHLGLIARAVHACaeRDQLHSALLPLFQQLSTDEQDSVRLLAVQNCIELGKLLSlAENHAAVLPVLRTVSTDKSWRVRYVVAERFCELAEQ 384
                 555555544444444444433224444556666666666677777888888877666665421233333444445556666666666666666666666 PP

     RTP1_C1 109 lg 110
                 +g
  KOO22815.1 385 MG 386
                 55 PP

  == domain 4  score: 5.7 bits;  conditional E-value: 0.01
     RTP1_C1  34 avldiekilkllleaLkdedsYvYLnaikgLvaLadvfpee.vlklLleeyeeenekeslder 95 
                   ++ie++l l+l+ L+d+ + v Ln i++L a+ +v   e   + Ll + +e +++++   r
  KOO22815.1 465 RDATIEHLLPLFLQLLQDDFPEVRLNLISTLHAVSTVLGVEqLSHSLLPAISELAKDRQWRVR 527
                 567899***************************999986440445666666555555554444 PP

  == domain 5  score: -2.0 bits;  conditional E-value: 2.4
     RTP1_C1   6 kdlqdpllpvrahglvlLrklie 28 
                 + lqd    +r  ++   rkli 
  KOO22815.1 556 SWLQDCVFTIREAAIANVRKLID 578
                 56889999999999999999986 PP

  == domain 6  score: 4.8 bits;  conditional E-value: 0.018
     RTP1_C1   4 alkdlqdpllpvrahglvlLrkliekkskeavldie 39 
                 alk   dp + vr ++  +Lr+l+ + ++ +   ++
  KOO22815.1 632 ALKLAADPVPNVRFNAAKTLRELVPQLDAAT---VH 664
                 789999*******************998443...33 PP

>> Adaptin_N  Adaptin N terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.3   0.1    0.0037       6.1     311     412 ..     126     230 ..     114     243 .. 0.84
   2 !    6.8   0.1    0.0013       2.1     230     309 ..     310     396 ..     269     413 .. 0.61
   3 !    4.5   1.0    0.0063        10     113     216 ..     431     534 ..     418     677 .. 0.68

  Alignments for each domain:
  == domain 1  score: 5.3 bits;  conditional E-value: 0.0037
                 SXXTTSXHHHHHHHHHHHCCCXXTTTHHHHHHHHHHHTTSSXXHH..HHHHHHHHHHHHHHHS..CCHHHHHHHHHHHHHTTXXHHHHHHHHHHHHHHH CS
   Adaptin_N 311 llktdddvsirlkaldlllklvdesNvkeivkeLkkyvkevaded..fksklvkaIgrlaekf..atdaewvldvllellslsgesvkdeivevirdli 405
                  lk +dd++ rl  +  l++++ +  v++  +eL  +++e+ d +  +  +l++ +g++ e +     a++ l+ l  l + +++ v+d++v+++ ++ 
  KOO22815.1 126 ELK-NDDIQLRLNSIRRLSTIAVALGVERTRDELIPFLNESIDDEdeVLLALAEELGNFVEYVggSAHASSLLTPLETLATVEETVVRDKAVDSLNNVA 223
                 577.99********************************7666665578889999999999999977778888888888888888888**********99 PP

                 HHSTTTS CS
   Adaptin_N 406 qkvpelh 412
                 q+ + +h
  KOO22815.1 224 QQLSREH 230
                 9887776 PP

  == domain 2  score: 6.8 bits;  conditional E-value: 0.0013
                 HHHHHHHCGGCG....CSSCHHHHHHHHHCCHCCCCST..HHHCCHHCHHHHHH.SSCCTCHHHHHCHHHHHHHHXXTTTTTTTCCC CS
   Adaptin_N 230 kellesllnllq....ssnnaVlletvnlivelapkne..livlavnaLvrlls.skdenlryvaLrtllkivkkepkavqhldlki 309
                 ++l   ll+l+q      +++V l +v+  +el +  +   +++av    r++s +k   +ryv+ +++++++++  + v++ +l  
  KOO22815.1 310 DQLHSALLPLFQqlstDEQDSVRLLAVQNCIELGKLLSlaENHAAVLPVLRTVStDKSWRVRYVVAERFCELAEQMGPDVTTAELVN 396
                 345555555555555566777777777777755444442212333333333333355666777777777777777666666555554 PP

  == domain 3  score: 4.5 bits;  conditional E-value: 0.0063
                 HHHHHHHHHHHT-SSHHHHHHHHHHHHHCCCCCHHCCCCC.HHHHHHHCTT-SSHHHHHHHHHHHHHHHCCCCCCC.HHHHHHHCCHHHHHHCS-HH.H CS
   Adaptin_N 113 edlapaikkllkdrspyvrkkAalailklykkdpdllrkq.lveeikellsdkdpgvvlaAvalleeikkndrlll.kllpklvrrLcnllteldpw.l 208
                   ++p++++l kd+s  vr + a  i+ +  +       + l++ + +ll+d+ p v l+ +++l+ +  +  l + +l ++l   +++l +   +w  
  KOO22815.1 431 LHIVPCVRELSKDSSQHVRAALASVIMGIAPLVGRDATIEhLLPLFLQLLQDDFPEVRLNLISTLHAV--STVLGVeQLSHSLLPAISELAK-DRQWrV 526
                 56888888888888888888888888888888665555666888888999998888888888888888..2222225666666666666642.222212 PP

                 HHHHHHHH CS
   Adaptin_N 209 qvkiikll 216
                    ii+++
  KOO22815.1 527 RFAIIECI 534
                 33333333 PP

>> Arm  Armadillo/beta-catenin-like repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.0       5.8   9.4e+03      15      31 ..     121     137 ..     120     140 .. 0.81
   2 ?   -3.1   0.0         6   9.7e+03      23      40 ..     283     300 ..     280     301 .. 0.71
   3 ?    0.1   0.0      0.57   9.2e+02      13      32 ..     394     413 ..     389     414 .. 0.84
   4 ?    8.5   0.0    0.0013       2.1       5      36 ..     465     495 ..     463     496 .. 0.88
   5 ?   -2.9   0.0       5.1   8.3e+03       7      21 ..     529     541 ..     527     546 .. 0.79
   6 ?    4.2   0.1     0.029        47      15      39 ..     630     654 ..     628     655 .. 0.85

  Alignments for each domain:
  == domain 1  score: -3.1 bits;  conditional E-value: 5.8
                 HHHHHHTTTSSHHHHHH CS
         Arm  15 ppLvrLLssedeevqee 31 
                  +L++ L+++d +++ +
  KOO22815.1 121 AILIDELKNDDIQLRLN 137
                 67999999999998876 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 6
                 TSSHHHHHHHHHHHHHHT CS
         Arm  23 sedeevqeeAawALsNLa 40 
                 ++ ++v+++A + L+ +a
  KOO22815.1 283 DDTPMVRRAASAHLGLIA 300
                 556788888888888776 PP

  == domain 3  score: 0.1 bits;  conditional E-value: 0.57
                 HHHHHHHHTTTSSHHHHHHH CS
         Arm  13 avppLvrLLssedeevqeeA 32 
                  v  +v+LL++   ev+ +A
  KOO22815.1 394 LVNTFVALLKDVEAEVRVAA 413
                 5889******9999998776 PP

  == domain 4  score: 8.5 bits;  conditional E-value: 0.0013
                 HHHHHHTTHHHHHHHHTTTSSHHHHHHHHHHH CS
         Arm   5 kdavieaGavppLvrLLssedeevqeeAawAL 36 
                 +da ie+  +p +++LL+++ +ev+ +  ++L
  KOO22815.1 465 RDATIEH-LLPLFLQLLQDDFPEVRLNLISTL 495
                 6777877.9****************9998887 PP

  == domain 5  score: -2.9 bits;  conditional E-value: 5.1
                 HHHHTTHHHHHHHHT CS
         Arm   7 avieaGavppLvrLL 21 
                 a+ie+  +p L + L
  KOO22815.1 529 AIIEC--IPLLAEQL 541
                 78888..99998877 PP

  == domain 6  score: 4.2 bits;  conditional E-value: 0.029
                 HHHHHHTTTSSHHHHHHHHHHHHHH CS
         Arm  15 ppLvrLLssedeevqeeAawALsNL 39 
                 p  ++L  ++ ++v+++Aa +L+ L
  KOO22815.1 630 PLALKLAADPVPNVRFNAAKTLREL 654
                 5557888899************988 PP

>> MMS19_N  Dos2-interacting transcription regulator of RNA-Pol-II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.6   0.0     0.013        21       4      40 ..     200     236 ..     198     342 .. 0.84
   2 ?    3.5   0.0     0.027        45     203     255 ..     466     518 ..     444     522 .. 0.88
   3 ?    0.0   0.0      0.32   5.2e+02     202     250 ..     621     669 ..     600     676 .. 0.83

  Alignments for each domain:
  == domain 1  score: 4.6 bits;  conditional E-value: 0.013
     MMS19_N   4 LgeyLtseddkvRakavslLaevlsrlpkkklseeev 40 
                 L++  t e++ vR kav  L++v+++l++++l e+ v
  KOO22815.1 200 LETLATVEETVVRDKAVDSLNNVAQQLSREHLLEHFV 236
                 5666677999*****************9877766655 PP

  == domain 2  score: 3.5 bits;  conditional E-value: 0.027
     MMS19_N 203 plfaplalplllekLdstsvsakldaLqtlaacveaygaeavaehlralwsal 255
                 ++  +++lpl+l+ L+ + ++++l  ++tl a+ +  g e+++  l + +s+l
  KOO22815.1 466 DATIEHLLPLFLQLLQDDFPEVRLNLISTLHAVSTVLGVEQLSHSLLPAISEL 518
                 5566899********************************99999888877776 PP

  == domain 3  score: 0.0 bits;  conditional E-value: 0.32
     MMS19_N 202 splfaplalplllekLdstsvsakldaLqtlaacveaygaeavaehlra 250
                  +l+a ++lpl l+  +  +++++  a +tl + v++ +a++v+e +r+
  KOO22815.1 621 AELLAGTLLPLALKLAADPVPNVRFNAAKTLRELVPQLDAATVHERVRP 669
                 478889999999966666999*****************99999998876 PP

>> DRIM  Down-regulated in metastasis
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.8   0.6     0.018        29     405     464 ..     286     342 ..      82     402 .. 0.67
   2 ?    7.5   3.7   0.00065       1.1     384     500 ..     428     534 ..     306     594 .. 0.61

  Alignments for each domain:
  == domain 1  score: 2.8 bits;  conditional E-value: 0.018
        DRIM 405 kellereleiLsrlaplvedseqassLldlllplLrkpsrrvsektkvelLkilenllrl 464
                   + +++   L  +a  v+   ++++L + llpl+++   +++e++ v+lL  ++n ++l
  KOO22815.1 286 PMVRRAASAHLGLIARAVHACAERDQLHSALLPLFQQL--STDEQDSVRLLA-VQNCIEL 342
                 33444444445555666666666667777777777663..366666666653.4555555 PP

  == domain 2  score: 7.5 bits;  conditional E-value: 0.00065
        DRIM 384 slLeylsalleksaaskkdkskellereleiLsrlaplvedseqassLldlllplLrkpsrrvsektkvelLkilenllrlydedevdlpekllktlss 482
                  +L ++   +++ +   kd+s+++  +  ++++ +aplv  + + ++Ll l+l+lL+ +  +v+ +  ++ L +++ +l       ++l ++ll ++s 
  KOO22815.1 428 LVLLHIVPCVRELS---KDSSQHVRAALASVIMGIAPLVGRDATIEHLLPLFLQLLQDDFPEVRLN-LISTLHAVSTVLGV-----EQLSHSLLPAISE 517
                 33334444444443...4456788888889999*************************99777777.45555555555555.....5678999999998 PP

        DRIM 483 lfsrlkdreaRklLcevl 500
                 l +  ++  +R +++e++
  KOO22815.1 518 LAKD-RQWRVRFAIIECI 534
                 8665.3334555555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (693 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       431  (0.0240393); expected 358.6 (0.02)
Passed bias filter:                      358  (0.0199677); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.73u 0.29s 00:00:01.02 Elapsed: 00:00:00.47
# Mc/sec: 4422.90
//
Query:       KOO22816.1  [L=332]
Description: hypothetical protein Ctob_009226 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.5e-22   80.1   0.1      3e-22   79.1   0.1    1.5  1  Dus            Dihydrouridine synthase (Dus)


Domain annotation for each model (and alignments):
>> Dus  Dihydrouridine synthase (Dus)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   79.1   0.1   1.7e-26     3e-22     113     301 ..       1     198 [.       1     211 [. 0.73

  Alignments for each domain:
  == domain 1  score: 79.1 bits;  conditional E-value: 1.7e-26
                 HHHHHHCCSSS-EEEEEESESSTTTC.HHHHHHHHHHCT-SEEEEESS........ECCCTT-CG--CHHHHHHHHH-S.S-EEEESS--SHHHHHHHH CS
         Dus 113 ivkavvkaveiPvtvkirigiddeeenalelakiveaaGaqaltvHgR........traqnyegtadweaIkevkqavs.ipviaNGdIkdaedaqail 202
                 +++++ + + iPv +kir+      e+++el+  + +aGa  +++H+R        t +  + g+a ++++++v+ av+ + +i NG+++++ed+ a++
  KOO22816.1   1 MIRTLAQTLTIPVFAKIRLLST--TEKTIELVTQLRDAGASLVAIHARhrvnlvgrTGQGARDGPALLDEVAKVRAAVPgVRLISNGNVRTWEDVVANM 97 
                 688999999**********987..8889**************************9999999999*********************************** PP

                 HHH--SEEEESCHHCCSTTHHHH.HHHHHHSC------HHHHHHHHHHHHHHCHHTTCCCCCCHHHHHHHHHHHHH..HTTTTCHHHHHHHHHHHHCCH CS
         Dus 203 eetGadgvmigrgalgnPwlfae.stavktgeaepapplaeeaeiveehlkkleeelgedkglrkirkhlawylkg..lkkaaelrreleevsdkeeal 298
                 e tGadg+m ++g l +P++f      + t   + a  ++    +  + + + ++e g  +  r +rk  +++++   l++aa lr+  +++ +keeal
  KOO22816.1  98 ELTGADGIMSAEGILDDPAIFFPgRSSNLT-TTGGAIAAVAAGSASGNVAAASLSEGGLSEEERRVRKLTKKLREVerLEAAALLREGGSASLTKEEAL 195
                 *******************99643333322.22222222222222222223333333333333333333333333233677777777777777777765 PP

                 HCH CS
         Dus 299 enl 301
                 + +
  KOO22816.1 196 KVA 198
                 555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (332 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1340  (0.0747392); expected 358.6 (0.02)
Passed bias filter:                      708  (0.0394891); expected 358.6 (0.02)
Passed Vit filter:                        61  (0.00340231); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.54u 0.27s 00:00:00.81 Elapsed: 00:00:00.43
# Mc/sec: 2324.98
//
Query:       KOO22817.1  [L=441]
Description: tectonic-like protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.5e-07   31.7   0.0    2.3e-06   27.8   0.0    2.2  2  DUF1619   Protein of unknown function (DUF1619)


Domain annotation for each model (and alignments):
>> DUF1619  Protein of unknown function (DUF1619)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.8   0.0   1.3e-10   2.3e-06     124     317 .]      20     210 ..       3     210 .. 0.69
   2 ?    1.6   0.0     0.012   2.1e+02     242     265 ..     340     363 ..     247     386 .. 0.83

  Alignments for each domain:
  == domain 1  score: 27.8 bits;  conditional E-value: 1.3e-10
     DUF1619 124 sskYkvgdpiq...tvkekse.....vsyltlpqsslsgqCqdenpvaFlr.dqsteCtrnlevl..rdscttlsalsaksytsnlkllkskksqessk 211
                   +Y+  dp++    ++++s+     +  ++lp+++ +g C  ++   Fl   q+  C    +    ++ c+++  l+a+ + s  k+ k++    s  
  KOO22817.1  20 VGRYELRDPVKgdgCISAASTdgctsIFDFQLPAVAPDGGCGGKQLLPFLVgVQAFACDLGETGAtlESVCSNT--LNASFL-SRIKIYKQP----SGG 111
                 6666666654422222222224455566799********************99*****8544333446666666..777776.445552322....222 PP

     DUF1619 212 eevtvsvtvlesadgkklttltetvseespllesstCrnvvleveyvityngtgeItevsvslvlanvsasqk.iltqrftvkFlsansenekesrSGn 309
                     v+ +++ s+ +++            +++  ++C n+++  +++++ + +g I +v+v + ++++++++    t  f   F   +++  ++++SG 
  KOO22817.1 112 APADVRFVMTGSSVPGSAPV--------GSSYVPGQCSNAMVLYQLRLVVSPAGAIENVTVYVHFDTLTEANWrNATPIFGAAFEYSQAAGVTRETSGR 202
                 23445544444444333333........3456789********************************99988678899999999888888788889*** PP

     DUF1619 310 pGYvvGkP 317
                 pGY+ G P
  KOO22817.1 203 PGYQRGLP 210
                 ******98 PP

  == domain 2  score: 1.6 bits;  conditional E-value: 0.012
     DUF1619 242 llesstCrnvvleveyvityngtg 265
                 + ++  C+nvv ++++++ y++ g
  KOO22817.1 340 VPAGPRCENVVAGIHLRVLYTKVG 363
                 556778**************9875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (441 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       211  (0.0117686); expected 358.6 (0.02)
Passed bias filter:                      187  (0.01043); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.25s 00:00:00.73 Elapsed: 00:00:00.43
# Mc/sec: 3109.23
//
Query:       KOO22818.1  [L=148]
Description: hypothetical protein Ctob_009225 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.013   15.5   0.7        1.5    8.8   0.0    2.4  2  TetR_C_7  AefR-like transcriptional repressor, C-terminal dom


Domain annotation for each model (and alignments):
>> TetR_C_7  AefR-like transcriptional repressor, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.8   0.0   8.6e-05       1.5      28      68 ..      62     101 ..      56     104 .. 0.92
   2 ?    5.4   0.0   0.00096        17      14      45 ..     102     134 ..     101     146 .. 0.74

  Alignments for each domain:
  == domain 1  score: 8.8 bits;  conditional E-value: 8.6e-05
                 HHHHT-HHHHCCHHHT.T----HHHHHHHHHHHHTTSB-SS CS
    TetR_C_7  28 aeaerfPelarafyeagpgrveealaayLeaavaaGrLrid 68 
                 a ++r+P+l  + ++a  +r+ ++l+  L+a++ +G Lr+ 
  KOO22818.1  62 ALVPRTPDLSSMRLDA-SERTASTLELALAAEALRGLLRVS 101
                 5579***********9.*********************985 PP

  == domain 2  score: 5.4 bits;  conditional E-value: 0.00096
                 HT-HHHHHHHHHHHHHHHT-.HHHHCCHHHT.T CS
    TetR_C_7  14 llspevlalaRlviaeaerf.Pelarafyeagp 45 
                 +++++ l+l+R v+ae+ +f   l ra  ++g 
  KOO22818.1 102 ICDENDLRLVRRVVAESRHFfTSLRRAADDRGV 134
                 789999***********9962566666666664 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (148 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       356  (0.0198561); expected 358.6 (0.02)
Passed bias filter:                      256  (0.0142785); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.22s 00:00:00.60 Elapsed: 00:00:00.38
# Mc/sec: 1180.48
//
Query:       KOO22819.1  [L=293]
Description: hypothetical protein Ctob_002168 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      8e-06   26.5  23.2        1.2   10.1   0.1    6.9  6  SHIPPO-rpt  Sperm-tail PG-rich repeat


Domain annotation for each model (and alignments):
>> SHIPPO-rpt  Sperm-tail PG-rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.7   0.1   0.00019       3.4      12      29 ..      16      34 ..       9      35 .. 0.87
   2 ?    3.1   1.2     0.012   2.1e+02       2      27 ..      56      84 ..      55      88 .. 0.78
   3 !    3.5   0.1    0.0087   1.6e+02       4      29 ..      96     118 ..      96     120 .. 0.87
   4 !    7.1   0.4   0.00064        11       1      26 [.     140     170 ..     140     174 .. 0.81
   5 !   10.1   0.1   6.9e-05       1.2       2      29 ..     186     218 ..     185     220 .. 0.93
   6 !    5.7   0.3    0.0018        32       1       9 [.     285     293 .]     285     293 .] 0.91

  Alignments for each domain:
  == domain 1  score: 8.7 bits;  conditional E-value: 0.00019
  SHIPPO-rpt 12 nvpsn.ksaPkysfGqrkr 29
                ++ s+  saP+y fG+ +r
  KOO22819.1 16 QWVSSrQSAPSYGFGTSTR 34
                4899999********9887 PP

  == domain 2  score: 3.1 bits;  conditional E-value: 0.012
  SHIPPO-rpt  2 PGPGtYkpnk....nvpsnksaPkysfGqr 27
                PGP  Y  ++    ++    s+P+y +G+ 
  KOO22819.1 56 PGPAKYGSKSvlgpQLILT-SQPSYGMGTS 84
                8999998888886666666.9999999975 PP

  == domain 3  score: 3.5 bits;  conditional E-value: 0.0087
  SHIPPO-rpt   4 PGtYkpnknvpsnksaPkysfGqrkr 29 
                 P++Y+ ++  ++  +  ++s+G+ +r
  KOO22819.1  96 PNAYDMKD--TIG-GPGGFSMGTSTR 118
                 999*****..999.677*****9887 PP

  == domain 4  score: 7.1 bits;  conditional E-value: 0.00064
  SHIPPO-rpt   1 lPGPGtYkpnk....nvpsn.ksaPkysfGq 26 
                 +PGP tY+ +     ++ s   s P++ fG+
  KOO22819.1 140 SPGPATYSGVAgvgkQYSSCkGSEPCWGFGT 170
                 6*******99988888888877788888886 PP

  == domain 5  score: 10.1 bits;  conditional E-value: 6.9e-05
  SHIPPO-rpt   2 PGPGtYkpnk....nvpsn.ksaPkysfGqrkr 29 
                 P PG+Y++ +    ++  +  saP + +G+ +r
  KOO22819.1 186 PAPGAYEIASsvgpQAVGRfASAPLFGMGTSTR 218
                 99************99999999******99887 PP

  == domain 6  score: 5.7 bits;  conditional E-value: 0.0018
  SHIPPO-rpt   1 lPGPGtYkp 9  
                 +P PG+Y++
  KOO22819.1 285 TPAPGAYNV 293
                 7******96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (293 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       208  (0.0116013); expected 358.6 (0.02)
Passed bias filter:                      159  (0.00886831); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.26s 00:00:00.69 Elapsed: 00:00:00.43
# Mc/sec: 2060.09
//
Query:       KOO22820.1  [L=118]
Description: hypothetical protein Ctob_002170 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (118 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       399  (0.0222544); expected 358.6 (0.02)
Passed bias filter:                      357  (0.0199119); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.39u 0.23s 00:00:00.62 Elapsed: 00:00:00.40
# Mc/sec: 889.12
//
Query:       KOO22821.1  [L=439]
Description: hypothetical protein Ctob_002171 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.6e-14   54.0   0.8    2.4e-14   53.5   0.8    1.2  1  Bestrophin  Bestrophin, RFP-TM, chloride channel


Domain annotation for each model (and alignments):
>> Bestrophin  Bestrophin, RFP-TM, chloride channel
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.5   0.8   1.3e-18   2.4e-14      26     281 ..      55     343 ..      40     353 .. 0.72

  Alignments for each domain:
  == domain 1  score: 53.5 bits;  conditional E-value: 1.3e-18
  Bestrophin  26 lrelllflllyalvvllyr.l.ee.rl.............fellsice.....lipLsfvLgFrvnavydRWweqrkllgwldkaarslarqvrglsde 103
                 +   ll++ l++l  + y+ l  + +              +               ++++L+F+++ +y R+ + + +   +  a+  +a  ++  ++ 
  KOO22821.1  55 WFFTLLHTGLFVLKLYGYTpLlASiTNerapvnewaitleV------SivsisSTFMALLLVFYNSQCYGRFTSFYHASCGMGGALQEIAEITSV-TMA 146
                 55556666666666666666433331134465555554332......0222335679**********************9999999999999888.777 PP

  Bestrophin 104 egrlarrtilrylvlllvlffralssrvrkrfptlehlleagllteeeakile.............................nkywvplqWavsllrrl 173
                  + ++r  ++ry++ +++ ++ ++ +  r++ ++l++   + l+ +eea                                 ++  +   W ++++ r+
  KOO22821.1 147 GSPAQRWDVCRYALASATTIYGKVLNLSRNKLAKLDDEAWERLMVSEEAWL-GtakegvepampallddkerfvlcsaecagKEFQILQMWSLDAAYRV 244
                 8999999*******9999999999998888866666333334444444422.13444555555666666555556688888777777777999999996 PP

  Bestrophin 174 aerlkelakegrikddq.alkeleeelnelraklgsleridwtpiPlvYtqvvtravylyfllallgrqfldseidlylPvftllqfaffffGllkvae 271
                          +g  +  + ++ +le+ +  lr++ +++ ++  +p+P+ Y  ++  +v++++ ++l++  fld +  +  Pv  +l + f+f ++ ++++
  KOO22821.1 245 Y-A-----PNGGADGLMcHYGRLEDAVLRLRSHGAAITNLLEMPVPFPYYHIL--VVIMFVNFTLFSVAFLDLNS-YATPVAMFLIV-FIFSAMRELSS 333
                 6.4.....34444444446889***************************8875..56666666669999998873.44695555555.*********** PP

  Bestrophin 272 qlenPFGedd 281
                 +l nPFG+d+
  KOO22821.1 334 ALANPFGTDE 343
                 ********86 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (439 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       475  (0.0264934); expected 358.6 (0.02)
Passed bias filter:                      285  (0.015896); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.50u 0.23s 00:00:00.73 Elapsed: 00:00:00.42
# Mc/sec: 3158.22
//
Query:       KOO22822.1  [L=594]
Description: hypothetical protein Ctob_002172 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    7.5e-14   51.7   0.2      8e-13   48.3   0.0    2.7  2  Beta-lactamase  Beta-lactamase


Domain annotation for each model (and alignments):
>> Beta-lactamase  Beta-lactamase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.3   0.0   4.5e-17     8e-13      40     291 ..      57     420 ..      36     442 .. 0.71
   2 ?   -3.3   0.0      0.23   4.1e+03      97     134 ..     516     552 ..     514     556 .. 0.61

  Alignments for each domain:
  == domain 1  score: 48.3 bits;  conditional E-value: 4.5e-17
                     TTEEESTTSBEEEGGGHHHHHHHHHHHHHHTTSSCTTSBG....................................................... CS
  Beta-lactamase  40 ggrpvtadtlfriaSvtKtftaaavlqlveeGkldLddpV....................................................... 79 
                     ++  +t+d   +++S+tK++ta+av++l+e G ++Ld+pV                                                       
      KOO22822.1  57 TTSRLTPDNQIPVGSTTKMYTAVAVMRLAEVGIIQLDQPVaplvdrylakpmtcdqaplycaaecapishclvapkpdcsavtqetnlrcsyclr 151
                     45589***************************************999999999999999999888888888888888888888877777666655 PP

                     .GGTST................TCTTGGGTTEBHHHHHTTHSSCSSSSTSTTCTSHHHTH............................HHHHHHH CS
  Beta-lactamase  80 .skylP................efagpgkgkiTlrdLltHtsGlpdlfasdlleeaaada............................aellral 129
                                           ++ + + +++T r+ l++ sGl+d+   +++ ++ ++                              e + + 
      KOO22822.1 152 fL---HcfpgegrptavsvlnlWKNDTRIENVTFRHILSMNSGLRDY---YDTPGGNEWLyyavlnstrdvepleylveqdksflfspGEETIVP 240
                     51...05556666666667777778888899*************998...33333333335569****997777777777766666664444455 PP

                     HHSBSSSSTTSCEE-SHHHHHHHHHHHHHHHT.SHHHHHHHHHTTTT...TTSTTEESSTTGGGGGGBEEEEEEETCEEECSCETTHHHHC.... CS
  Beta-lactamase 130 atlppkyapGtkwgYsntgygllgellekvtg.rsleqllreeilrp...Lgmkdtelgppesgdprdaagytgngpearappanlpaeae.... 216
                     a +p +++   + +Ys  +y+l g++l+++++  +++ql + ++l+    L   d +l p +  +  + + +++    +  ++  + +       
      KOO22822.1 241 AGQPGAGQTVRRGAYSTNAYSLIGLALAGLFDlDDWAQLDQ-RLLSWgeaLPVDDATLFPTRGTCLSYGSIAHQYTSRFENETFVDIS--Nhscl 332
                     55555555666667*****************9677777654.4444333388999999999988888888884444433333333333..25588 PP

                     ...TTTBEEEEHHHHHHHH..HHHHHCCSSSSHHHHHHHHHHHTSEEEECTTEEEEC.ECSSEEEEECCH.........TEEEEEEE..STE CS
  Beta-lactamase 217 ...gagglistardlarfl..glalegglllsaetlaqltaklssgttrpagiragl.glGwvladktga.........pgtfghtG..ggy 291
                         +g+++  + d+arf    ++++ ++l s+++laq+++ +  ++ ++         +G+ l+ ++++            +gh+G   g 
      KOO22822.1 333 nswMGGNIAPRPLDVARFTfaAFRNDSKALISEASLAQMADFAPLTEEFGQY----IvAYGLGLEGRWDGigvpldvcgFLVIGHGGqdYGS 420
                     8999999999999999999776666666667777777764444444443333....234555556666666666666666677888854333 PP

  == domain 2  score: -3.3 bits;  conditional E-value: 0.23
                     HHHHTTHSSCSSSSTSTTCTSHHHTH...HHHHHHHHHSBS CS
  Beta-lactamase  97 rdLltHtsGlpdlfasdlleeaaada...aellralatlpp 134
                      dLl++t+ l++  + + + +         ++l++la++ p
      KOO22822.1 516 SDLLNMTAHLSPPLSANMACN----NwlsVRTLAMLAKELP 552
                     699******966544443333....2344566666666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (594 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       340  (0.0189637); expected 358.6 (0.02)
Passed bias filter:                      282  (0.0157287); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.55u 0.25s 00:00:00.80 Elapsed: 00:00:00.43
# Mc/sec: 4148.55
//
Query:       KOO22823.1  [L=661]
Description: regulator of telomere elongation helicase 1-like protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
      2e-50  171.3   0.0      3e-50  170.7   0.0    1.3  1  Helicase_C_2  Helicase C-terminal domain
    1.5e-33  115.9   0.2    2.2e-33  115.3   0.2    1.3  1  DEAD_2        DEAD_2
  ------ inclusion threshold ------
      0.011   16.3   0.1      0.034   14.8   0.1    1.9  1  DUF2735       Protein of unknown function (DUF2735)
      0.045   13.4   0.0      0.081   12.6   0.0    1.3  1  HBB           Helical and beta-bridge domain


Domain annotation for each model (and alignments):
>> Helicase_C_2  Helicase C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  170.7   0.0   6.8e-54     3e-50       1     170 [.     420     622 ..     420     623 .. 0.89

  Alignments for each domain:
  == domain 1  score: 170.7 bits;  conditional E-value: 6.8e-54
  Helicase_C_2   1 llellevvpggvlvffpSyklleevverlke...........eleskkieifvee.keesrekvleeyke..k.....kkkgaillavcrGklsEGi 78 
                   ++++++ vp+gvlvffpSy+ +++++++++            +  +k ++++ve+ ++++  + ++++++  +        ga+llavcrGklsEG+
    KOO22823.1 420 IINFARLVPQGVLVFFPSYSAMQSAHAAWALaspdggpsvleR-LRKLKTLVVEPrDASECAAAVQTFQDavQsslfrGTGGAMLLAVCRGKLSEGV 515
                   578999***********************99555555555433.3333445555558889999******97615677799***************** PP

  Helicase_C_2  79 dfsddllraviivglPfpnpkdpeveakreyldekgk...............knsgkewylpealravnQaiGRliRhkdDygaivllDeRfakeei 160
                   df+d ++r v+i+glP+p+  d +ve+kr+yld+++                  sg+ wy ++a+ravnQa+GR+iRh++D+ga++l+++Rfak+ +
    KOO22823.1 516 DFADSACRGVVITGLPLPPAFDAKVELKRQYLDQRRAgaarssglggsgasgMLSGEAWYHQQAMRAVNQAVGRVIRHRNDFGAVMLCESRFAKSAW 612
                   **********************************9999***********999899****************************************** PP

  Helicase_C_2 161 reklpkwlre 170
                      l+ wlr+
    KOO22823.1 613 VDGLSLWLRP 622
                   ********98 PP

>> DEAD_2  DEAD_2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  115.3   0.2     5e-37   2.2e-33      33     174 ..       1     144 [.       1     146 [. 0.88

  Alignments for each domain:
  == domain 1  score: 115.3 bits;  conditional E-value: 5e-37
                 EE--CCCC-SCHHCCCHHCCCCHHHHHHHHHCCHHCCHTTTTTT-SCC....CCHHHH..........HHHHHHC---CHHHHHHHHHCT--HHHHHHH CS
      DEAD_2  33 iLgSRknlCineevkkekkekavneaCkelkkkkaeekeekCsffenl....eelkkl..........kkllleevvdiedlvelgeklklCPYylsre 117
                 +LgSR++lC +++v+k + + + ++aC+ l++ +      +C ++++l    +    +           ++  + v died+v+  ++ +lCP+yl+re
  KOO22823.1   1 MLGSREQLCCHQDVSKLT-GPSQSAACQALTAAQ------SCVYYRKLqeakR----KhgslahpqaaADESVRAVPDIEDFVSSSKRDELCPFYLARE 88 
                 59**************66.778899******999......6999998854441....323344444457888999************************ PP

                 HHCCTSEEEEEHHHHTSCCCHHHHHT..GCGCEEEECTCCCHHHHHHHCC-EEEECH CS
      DEAD_2 118 lledadiiilpYqyLldekireslkgislknsivilDEAhNiedvceeaasveisee 174
                 l+   d+ +lpY+yLld+k+r++l+ i+l   ++i+DEAhNie vc++aas+++s+ 
  KOO22823.1  89 LQVCSDVLFLPYNYLLDPKVRRALN-INLASDVLIFDEAHNIERVCADAASFDLSSL 144
                 ************************8.****************************975 PP

>> DUF2735  Protein of unknown function (DUF2735)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.8   0.1   7.7e-06     0.034      12      50 ..     544     582 ..     542     584 .. 0.93

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 7.7e-06
     DUF2735  12 raaleerrseaslkaeleasavadaviggsWYHeeAire 50 
                 r+ l +rr  a++++ l  s +  ++ g +WYH++A+r 
  KOO22823.1 544 RQYLDQRRAGAARSSGLGGSGASGMLSGEAWYHQQAMRA 582
                 788899******************************985 PP

>> HBB  Helical and beta-bridge domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   1.8e-05     0.081     136     165 ..     344     373 ..     333     387 .. 0.84

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 1.8e-05
                 HHCHCCCCCCTS-SSHHHHHHHHT....EE CS
         HBB 136 kerlssllmsgtltpleeysdiiGleaklk 165
                 + ++s+ll+sgtl+pl  ++d +Gl+ + k
  KOO22823.1 344 AGVRSVLLTSGTLSPLGSFADELGLPFEYK 373
                 4688*********************95554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (661 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       448  (0.0249875); expected 358.6 (0.02)
Passed bias filter:                      375  (0.0209158); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.57u 0.26s 00:00:00.83 Elapsed: 00:00:00.42
# Mc/sec: 4674.31
//
Query:       KOO22824.1  [L=572]
Description: hypothetical protein Ctob_002158, partial [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0053   16.8   1.0         40    4.3   0.0    5.9  7  tRNA_edit  Aminoacyl-tRNA editing domain
  ------ inclusion threshold ------
      0.023   14.9   0.0        4.4    7.6   0.0    2.7  2  SH3_7      SH3 domain of SH3b2 type


Domain annotation for each model (and alignments):
>> tRNA_edit  Aminoacyl-tRNA editing domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.0      0.24   2.1e+03      40      56 ..      47      63 ..      37      72 .. 0.81
   2 ?   -1.6   0.0       0.3   2.7e+03      41      63 ..      76      98 ..      75     101 .. 0.83
   3 ?    0.0   0.0     0.095   8.5e+02      40      55 ..     103     118 ..      99     129 .. 0.86
   4 ?   -0.4   0.0      0.13   1.2e+03      41      56 ..     132     147 ..     131     158 .. 0.79
   5 !    4.3   0.0    0.0044        40      42      65 ..     161     184 ..     159     186 .. 0.93
   6 ?   -0.5   0.0      0.14   1.2e+03      40      56 ..     215     231 ..     213     238 .. 0.87
   7 ?    2.5   0.0     0.016   1.5e+02      38      56 ..     241     259 ..     234     275 .. 0.82

  Alignments for each domain:
  == domain 1  score: -1.3 bits;  conditional E-value: 0.24
   tRNA_edit 40 pgdreldlkklakllga 56
                 g  ++dl++l  +lg+
  KOO22824.1 47 LGQDRVDLQRLCDRLGT 63
                6889**********996 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 0.3
   tRNA_edit 41 gdreldlkklakllgakklrlas 63
                g +++dl+ l+ +lg+  +++++
  KOO22824.1 76 GHHRVDLQCLHDRLGTIVADPVD 98
                789************87776665 PP

  == domain 3  score: 0.0 bits;  conditional E-value: 0.095
   tRNA_edit  40 pgdreldlkklakllg 55 
                 +g +++dl++l+  lg
  KOO22824.1 103 RGQHRVDLQRLRDCLG 118
                 899********99988 PP

  == domain 4  score: -0.4 bits;  conditional E-value: 0.13
   tRNA_edit  41 gdreldlkklakllga 56 
                 g +++dl+ l+ +lg+
  KOO22824.1 132 GQHRVDLQHLRDRLGT 147
                 78************97 PP

  == domain 5  score: 4.3 bits;  conditional E-value: 0.0044
   tRNA_edit  42 dreldlkklakllgakklrlasee 65 
                  +++dl++l+ +lg+ +++la +e
  KOO22824.1 161 HHRIDLQRLRDRLGTINADLAPPE 184
                 69*******************998 PP

  == domain 6  score: -0.5 bits;  conditional E-value: 0.14
   tRNA_edit  40 pgdreldlkklakllga 56 
                 +g  ++dl++l+ +lg+
  KOO22824.1 215 SGQDRVDLHRLRDRLGT 231
                 6889***********96 PP

  == domain 7  score: 2.5 bits;  conditional E-value: 0.016
   tRNA_edit  38 llpgdreldlkklakllga 56 
                 + +g +++dl++l+ +lg+
  KOO22824.1 241 VHRGQHRVDLQRLSYRLGT 259
                 679**************96 PP

>> SH3_7  SH3 domain of SH3b2 type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.6   0.0   0.00049       4.4      12      42 ..      87     122 ..      79     124 .. 0.88
   2 ?    4.1   0.0    0.0057        51       5      41 ..     220     261 ..     217     262 .. 0.80

  Alignments for each domain:
  == domain 1  score: 7.6 bits;  conditional E-value: 0.00049
                 .-EEEE-STTEEEE-TTS-EEEEE-.....TT-EEE CS
       SH3_7  12 qrfaviirdnvplyDatgqylftar.....iGtvLP 42 
                 +r+++i+ d+v l  + gq++ +       +Gt++P
  KOO22824.1  87 DRLGTIVADPVDLEVNRGQHRVDLQrlrdcLGTLIP 122
                 79*******************998888888888888 PP

  == domain 2  score: 4.1 bits;  conditional E-value: 0.0057
                 HHHHHSS.-EEEE-STTEEEE-TTS-EEEEE-.....TT-EE CS
       SH3_7   5 vttwrsaqrfaviirdnvplyDatgqylftar.....iGtvL 41 
                 v+  r ++r+++i+ d v l    gq++ +       +Gt++
  KOO22824.1 220 VDLHRLRDRLGTIVADGVGLEVHRGQHRVDLQrlsyrLGTLF 261
                 55567779************9999999987766666677776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (572 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       255  (0.0142228); expected 358.6 (0.02)
Passed bias filter:                      197  (0.0109878); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.52u 0.25s 00:00:00.77 Elapsed: 00:00:00.42
# Mc/sec: 4118.24
//
Query:       KOO22825.1  [L=810]
Description: peptidylprolyl isomerase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.4e-28   98.3   0.0    1.4e-11   44.5   0.0    3.4  3  FKBP_C    FKBP-type peptidyl-prolyl cis-trans isomerase
     0.0041   17.1   6.0       0.32   11.2   0.7    3.5  3  TPR_2     Tetratricopeptide repeat
     0.0082   15.9   6.9        2.2    8.2   0.5    3.4  3  TPR_1     Tetratricopeptide repeat
  ------ inclusion threshold ------
       0.11   12.7   2.1         15    6.1   0.2    2.6  2  TPR_8     Tetratricopeptide repeat
        8.6    5.7   8.6         34    3.7   6.6    2.1  2  DUF4502   Domain of unknown function (DUF4502)


Domain annotation for each model (and alignments):
>> FKBP_C  FKBP-type peptidyl-prolyl cis-trans isomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.5   0.0   3.9e-15   1.4e-11       5      93 ..     106     191 ..     103     192 .. 0.93
   2 !   36.7   0.0   1.1e-12   3.9e-09       5      94 .]     219     308 ..     216     308 .. 0.93
   3 !   12.9   0.0     3e-05      0.11      21      92 ..     514     589 ..     480     616 .. 0.68

  Alignments for each domain:
  == domain 1  score: 44.5 bits;  conditional E-value: 3.9e-15
                 B-TTCEEEEEEEEEET.TSSEEEEHCCHTSEEEEETTSSSSCHHHHHHHTTSBTT-EEEEEEEGGGTTTTTTBCTTTB.TTSEEEEEEEE CS
      FKBP_C   5 akegdtVtvhykgkle.dgkvfdssrsrakplefkvGsgqvikGfeealegmkvGekrtltippelaYgekglaggvippnatLvFeveL 93 
                 +++   V+v+yk++++  ++ f++     +   ++vGs+ +  G e +l++m+vGe   +t++p+++Yg++g a   +p+ + L++e +L
  KOO22825.1 106 PQQEWDVEVDYKARVAgSETPFEEA----TRRRLTVGSTGLPAGVEAGLKTMQVGEMSHFTVQPSQGYGDEGDAARGVPAASVLEYEMTL 191
                 5666689*********889999999....8999****************************************9999**********987 PP

  == domain 2  score: 36.7 bits;  conditional E-value: 1.1e-12
                 B-TTCEEEEEEEEEET.TSSEEEEHCCHTSEEEEETTSSSSCHHHHHHHTT...SBTT-EEEEEEEGGGTTTTTTBCTTTB.TTSEEEEEEEEE CS
      FKBP_C   5 akegdtVtvhykgkle.dgkvfdssrsrakplefkvGsgqvikGfeealeg...mkvGekrtltippelaYgekglaggvippnatLvFeveLl 94 
                 +   + +t+  +g+l  dg+ f ++     + +f+ G+  v   f+ a++g   m  Ge ++l + p l+Yg+ g+    +ppna+L  +veLl
  KOO22825.1 219 PSSRAEITLRWTGRLSrDGEPFLKD----FEQTFTAGDASVPTFFQSAVVGangMTTGEVCELKVAPALGYGAAGAPDLGVPPNAELFITVELL 308
                 566778999******99********....699*****************99999**********************8888************97 PP

  == domain 3  score: 12.9 bits;  conditional E-value: 3e-05
                 TSSEEEEHCCHTSEEEE...ETTSSSSCHHHHHHHTTSBTT-EEEEEEEGGGTTTTTTBCTTT...B.TTSEEEEEEE CS
      FKBP_C  21 dgkvfdssrsrakplef...kvGsgqvikGfeealegmkvGekrtltippelaYgekglaggv...ippnatLvFeve 92 
                 dg+v+++    ++p +f   + G+  v++ ++ a+++mk Ge  +lt    +aYg+      +    + ++ +v e e
  KOO22825.1 514 DGEVLEEV-PIERPRTFmqsEGGAAGVLPCIDAAVRHMKSGELVQLTAAAAWAYGSPSFDS-TgpfLARESAVVIELE 589
                 55555555.44444444110456666*****************************944322.1122555555555555 PP

>> TPR_2  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.9   0.0     0.087   3.1e+02       7      26 ..     617     636 ..     614     644 .. 0.81
   2 !    5.0   0.1    0.0089        32       5      32 ..     715     742 ..     712     744 .. 0.89
   3 !   11.2   0.7     9e-05      0.32       2      34 .]     746     778 ..     745     778 .. 0.96

  Alignments for each domain:
  == domain 1  score: 1.9 bits;  conditional E-value: 0.087
       TPR_2   7 lGlayyklgdyeeAleafek 26 
                 +G+ ++++g+y  Al+ +  
  KOO22825.1 617 RGNKLFARGEYRFALHKYTD 636
                 79999999999999999875 PP

  == domain 2  score: 5.0 bits;  conditional E-value: 0.0089
       TPR_2   5 ynlGlayyklgdyeeAleafekAleldP 32 
                  n++ +++klgd + A++a + Al+ld 
  KOO22825.1 715 LNIAACHLKLGDGAMAEKASNDALKLDM 742
                 689********************99985 PP

  == domain 3  score: 11.2 bits;  conditional E-value: 9e-05
       TPR_2   2 ealynlGlayyklgdyeeAleafekAleldPnn 34 
                 +aly++++a + + d+e A++++  A + dP+n
  KOO22825.1 746 KALYRRAQAKRLNLDFEGAKADLLTAAKADPQN 778
                 79*****************************97 PP

>> TPR_1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.5   0.1      0.04   1.4e+02       5      22 ..     615     632 ..     614     635 .. 0.86
   2 !    7.3   0.2    0.0012       4.4       4      31 ..     714     741 ..     712     741 .. 0.89
   3 !    8.2   0.5   0.00062       2.2       1      34 []     745     778 ..     745     778 .. 0.96

  Alignments for each domain:
  == domain 1  score: 2.5 bits;  conditional E-value: 0.04
                 HHHHHHHHHTT-HHHHHH CS
       TPR_1   5 ynlGnayfklgkydeAle 22 
                 + +Gn +f  g+y  Al 
  KOO22825.1 615 KSRGNKLFARGEYRFALH 632
                 579***********9996 PP

  == domain 2  score: 7.3 bits;  conditional E-value: 0.0012
                 HHHHHHHHHHTT-HHHHHHHHHHHHHHS CS
       TPR_1   4 lynlGnayfklgkydeAleyyekALeln 31 
                 + n++++++klg+   A+++ + AL+l+
  KOO22825.1 714 FLNIAACHLKLGDGAMAEKASNDALKLD 741
                 68****************9988888886 PP

  == domain 3  score: 8.2 bits;  conditional E-value: 0.00062
                 HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH CS
       TPR_1   1 akalynlGnayfklgkydeAleyyekALelnPnn 34 
                 +kaly++++a + + +++ A ++   A + +P+n
  KOO22825.1 745 VKALYRRAQAKRLNLDFEGAKADLLTAAKADPQN 778
                 58******************************97 PP

>> TPR_8  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.1   0.2    0.0043        15       4      31 ..     714     741 ..     711     744 .. 0.92
   2 ?    5.9   0.2     0.005        18       2      34 .]     746     778 ..     745     778 .. 0.93

  Alignments for each domain:
  == domain 1  score: 6.1 bits;  conditional E-value: 0.0043
                 HHHHHHHHHHTT-HHHHHHHHHHHHHHH CS
       TPR_8   4 yynlgsiylklgdyeeAkeyyekaleld 31 
                  +n++ ++lklgd  +A+++ + al+ld
  KOO22825.1 714 FLNIAACHLKLGDGAMAEKASNDALKLD 741
                 6899**********************98 PP

  == domain 2  score: 5.9 bits;  conditional E-value: 0.005
                 CHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH. CS
       TPR_8   2 eayynlgsiylklgdyeeAkeyyekaleldpdn 34 
                 +a+y+ +++ +   d+e Ak+ +  a ++dp+n
  KOO22825.1 746 KALYRRAQAKRLNLDFEGAKADLLTAAKADPQN 778
                 79999999999999*****************96 PP

>> DUF4502  Domain of unknown function (DUF4502)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.7   6.6    0.0096        34     144     193 ..     646     700 ..     635     713 .. 0.57
   2 ?    1.4   0.0     0.048   1.7e+02     322     365 ..     713     758 ..     710     760 .. 0.84

  Alignments for each domain:
  == domain 1  score: 3.7 bits;  conditional E-value: 0.0096
     DUF4502 144 dredasecsefeeeesaveisDcascassk.sltseeklselskes....eteil 193
                 d ++  e +  e+e+++v+isD+a++a+s+ s +se  +    ++     ++ei 
  KOO22825.1 646 DFKQEREEKAGEQEKAGVDISDGAAAATSSaSAASEASEASSVRSAavlsDAEIE 700
                 53344456666778888******99775440444444433333322333334443 PP

  == domain 2  score: 1.4 bits;  conditional E-value: 0.048
     DUF4502 322 CsvqvAlCeqle..eagakssskdeasepgaslkvLFtketAarLk 365
                 C +++A C+     +a a+++s+d+ + + a++k L+ +  A+rL+
  KOO22825.1 713 CFLNIAACHLKLgdGAMAEKASNDALKLDMANVKALYRRAQAKRLN 758
                 999*****97651156678899999999**************9985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (810 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       899  (0.0501422); expected 358.6 (0.02)
Passed bias filter:                      545  (0.0303977); expected 358.6 (0.02)
Passed Vit filter:                        48  (0.00267723); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.66u 0.32s 00:00:00.98 Elapsed: 00:00:00.45
# Mc/sec: 5392.77
//
Query:       KOO22826.1  [L=615]
Description: hypothetical protein Ctob_002157, partial [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    4.7e-66  213.3  17.4    0.00022   21.0   0.0   12.4 12  LRR_6           Leucine Rich repeat
    2.5e-08   34.0   6.5        0.4   10.8   0.1    5.9  4  EIF_2_alpha     Eukaryotic translation initiation factor 2 al
     0.0014   19.0   2.8         91    3.7   0.0    6.4  7  LRR_4           Leucine Rich repeats (2 copies)
     0.0026   17.7  34.4          4    7.5   0.1   10.0 10  CbiG_N          Cobalamin synthesis G N-terminal
      0.004   17.4   4.6        9.1    6.6   0.1    5.0  6  SpoU_sub_bind   RNA 2'-O ribose methyltransferase substrate b
  ------ inclusion threshold ------
       0.25   11.8  26.1         46    4.5   0.7    8.5  9  HOASN           Haem-oxygenase-associated N-terminal helices


Domain annotation for each model (and alignments):
>> LRR_6  Leucine Rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.0   0.0   7.4e-08   0.00022       6      23 ..     276     293 ..     275     294 .. 0.93
   2 !   19.1   0.0     3e-07    0.0009       2      24 .]     300     322 ..     299     322 .. 0.91
   3 !   20.2   0.0   1.4e-07   0.00041       2      24 .]     328     350 ..     327     350 .. 0.93
   4 !   18.7   0.1     4e-07    0.0012       2      24 .]     356     378 ..     355     378 .. 0.93
   5 !   15.9   0.0   3.3e-06    0.0098       2      24 .]     384     406 ..     383     406 .. 0.91
   6 !   17.5   0.1     1e-06     0.003       5      24 .]     415     434 ..     411     434 .. 0.89
   7 !   18.9   0.1   3.6e-07    0.0011       2      24 .]     440     462 ..     439     462 .. 0.93
   8 !   18.9   0.1   3.6e-07    0.0011       2      24 .]     468     490 ..     467     490 .. 0.93
   9 !   17.6   0.0   9.5e-07    0.0028       4      24 .]     498     518 ..     495     518 .. 0.89
  10 !   20.3   0.0   1.2e-07   0.00037       2      23 ..     524     545 ..     523     546 .. 0.91
  11 !   15.4   0.0   4.7e-06     0.014       2      24 .]     552     574 ..     551     574 .. 0.91
  12 !   10.0   0.0   0.00025      0.76       2      19 ..     580     597 ..     579     601 .. 0.89

  Alignments for each domain:
  == domain 1  score: 21.0 bits;  conditional E-value: 7.4e-08
       LRR_6   6 teLdLsgNdIgDeGaeaL 23 
                 ++LdLs N+Ig eGa+aL
  KOO22826.1 276 RTLDLSRNKIGPEGASAL 293
                 89***************9 PP

  == domain 2  score: 19.1 bits;  conditional E-value: 3e-07
       LRR_6   2 nthLteLdLsgNdIgDeGaeaLa 24 
                 n  +teL+LsgN+Ig eGa+a+a
  KOO22826.1 300 NAVVTELELSGNEIGEEGAKAIA 322
                 55689****************98 PP

  == domain 3  score: 20.2 bits;  conditional E-value: 1.4e-07
       LRR_6   2 nthLteLdLsgNdIgDeGaeaLa 24 
                 n  Lt++dL++N I D+Ga+a+a
  KOO22826.1 328 NAVLTSVDLQSNSIRDDGAKAIA 350
                 667******************98 PP

  == domain 4  score: 18.7 bits;  conditional E-value: 4e-07
       LRR_6   2 nthLteLdLsgNdIgDeGaeaLa 24 
                 n  Lt+L L gN+Ig eGa+a+a
  KOO22826.1 356 NAVLTTLRLDGNEIGSEGAIAIA 378
                 667******************98 PP

  == domain 5  score: 15.9 bits;  conditional E-value: 3.3e-06
       LRR_6   2 nthLteLdLsgNdIgDeGaeaLa 24 
                 n  +t+LdL++ +Ig +Ga+a+a
  KOO22826.1 384 NAVVTTLDLRWSKIGVDGAKAIA 406
                 55689****************98 PP

  == domain 6  score: 17.5 bits;  conditional E-value: 1e-06
       LRR_6   5 LteLdLsgNdIgDeGaeaLa 24 
                 + +L L gN IgDeGa+a+a
  KOO22826.1 415 VNTLYLGGNSIGDEGAKAIA 434
                 679***************98 PP

  == domain 7  score: 18.9 bits;  conditional E-value: 3.6e-07
       LRR_6   2 nthLteLdLsgNdIgDeGaeaLa 24 
                 n  Lt++dL+ N Ig++Ga+a+a
  KOO22826.1 440 NAVLTSVDLQLNSIGNDGAKAIA 462
                 667******************98 PP

  == domain 8  score: 18.9 bits;  conditional E-value: 3.6e-07
       LRR_6   2 nthLteLdLsgNdIgDeGaeaLa 24 
                 n  Lt++dL+ N Ig++Ga+a+a
  KOO22826.1 468 NAVLTSVDLQLNSIGNDGAKAIA 490
                 667******************98 PP

  == domain 9  score: 17.6 bits;  conditional E-value: 9.5e-07
       LRR_6   4 hLteLdLsgNdIgDeGaeaLa 24 
                  +t+L Ls N IgDeGa+a+a
  KOO22826.1 498 VVTTLFLSRNSIGDEGAKAIA 518
                 579999*************98 PP

  == domain 10  score: 20.3 bits;  conditional E-value: 1.2e-07
       LRR_6   2 nthLteLdLsgNdIgDeGaeaL 23 
                 n  Lt++dL+ N IgD+Ga+a+
  KOO22826.1 524 NAVLTSVDLQVNWIGDDGAKAI 545
                 667******************9 PP

  == domain 11  score: 15.4 bits;  conditional E-value: 4.7e-06
       LRR_6   2 nthLteLdLsgNdIgDeGaeaLa 24 
                 n  +t+L+  +N Ig eGa+a+a
  KOO22826.1 552 NAVVTTLNFGFNSIGVEGAKAIA 574
                 55689****************98 PP

  == domain 12  score: 10.0 bits;  conditional E-value: 0.00025
       LRR_6   2 nthLteLdLsgNdIgDeG 19 
                 n  Lt+LdL +N +gD+G
  KOO22826.1 580 NAVLTKLDLEYNSMGDAG 597
                 667*************99 PP

>> EIF_2_alpha  Eukaryotic translation initiation factor 2 alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.3   0.4   0.00077       2.3      28      81 ..     301     355 ..     230     429 .. 0.80
   2 !   10.8   0.1   0.00013       0.4      44      80 ..     458     494 ..     423     502 .. 0.65
   3 !    6.1   0.0    0.0039        12      45      82 ..     515     552 ..     506     568 .. 0.88
   4 ?    3.1   0.0     0.031        94      45      80 ..     571     606 ..     568     613 .. 0.91

  Alignments for each domain:
  == domain 1  score: 8.3 bits;  conditional E-value: 0.00077
                  HHHHHTTS-.TTTHHHHHHCTHHHHHHT-EEEEEEEEEEE-STTHHHHHHHHHHH CS
  EIF_2_alpha  28 evldkleip.eeveeaLveiikkklkpqkvkiradieltcftkdGveaIkeaLka 81 
                  +v+++le++ +e+ e+  + i + lk+++v  + d++ +++  dG +aI ea+k 
   KOO22826.1 301 AVVTELELSgNEIGEEGAKAIAEALKVNAVLTSVDLQSNSIRDDGAKAIAEAMKV 355
                  444555555577778888999999999*************************993 PP

  == domain 2  score: 10.8 bits;  conditional E-value: 0.00013
                  HHCTHHHHHHT-EEEEEEEEEEE-STTHHHHHHHHHH CS
  EIF_2_alpha  44 veiikkklkpqkvkiradieltcftkdGveaIkeaLk 80 
                   + i + +k+++v  + d++l++++ dG +aI eaLk
   KOO22826.1 458 AKAIAEAMKVNAVLTSVDLQLNSIGNDGAKAIAEALK 494
                  4566677777777777777777777777777777776 PP

  == domain 3  score: 6.1 bits;  conditional E-value: 0.0039
                  HCTHHHHHHT-EEEEEEEEEEE-STTHHHHHHHHHHHH CS
  EIF_2_alpha  45 eiikkklkpqkvkiradieltcftkdGveaIkeaLkag 82 
                  + i + lk+++v  + d++++ ++ dG +aI eaLk +
   KOO22826.1 515 KAIAEALKVNAVLTSVDLQVNWIGDDGAKAIVEALKVN 552
                  679999*****************************943 PP

  == domain 4  score: 3.1 bits;  conditional E-value: 0.031
                  HCTHHHHHHT-EEEEEEEEEEE-STTHHHHHHHHHH CS
  EIF_2_alpha  45 eiikkklkpqkvkiradieltcftkdGveaIkeaLk 80 
                  + i k l++++v  + d+e ++++  G +a+++a k
   KOO22826.1 571 KAIAKALEVNAVLTKLDLEYNSMGDAGKKAVRDAVK 606
                  679999****************************98 PP

>> LRR_4  Leucine Rich repeats (2 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.7   0.0      0.03        91       4      14 ..     276     286 ..     273     316 .. 0.64
   2 ?    2.8   0.0     0.057   1.7e+02       4      36 ..     304     341 ..     302     346 .. 0.56
   3 ?    3.4   0.0     0.037   1.1e+02       3      33 ..     331     367 ..     330     373 .. 0.64
   4 ?   -0.2   0.0      0.51   1.5e+03       3      15 ..     359     371 ..     357     381 .. 0.73
   5 ?    1.0   0.1      0.21   6.2e+02       5      18 ..     417     430 ..     415     456 .. 0.62
   6 ?    1.9   0.0      0.11   3.3e+02       4      18 ..     500     514 ..     499     540 .. 0.62
   7 ?    0.2   0.0      0.37   1.1e+03      25      33 ..     583     591 ..     555     596 .. 0.55

  Alignments for each domain:
  == domain 1  score: 3.7 bits;  conditional E-value: 0.03
                 -EEE--SS--- CS
       LRR_4   4 evLdLsnNqlt 14 
                 ++LdLs N++ 
  KOO22826.1 276 RTLDLSRNKIG 286
                 77888888876 PP

  == domain 2  score: 2.8 bits;  conditional E-value: 0.057
                 -EEE--SS---E-S-..HH...H.-TT--EEE-.-S--- CS
       LRR_4   4 evLdLsnNqltdipl..le...k.lpnLkeLdLsgNnli 36 
                 ++L Ls+N + + +   ++   k +  L+++dL +N  i
  KOO22826.1 304 TELELSGNEIGEEGAkaIAealKvNAVLTSVDLQSN-SI 341
                 677777777776666552233332333777777555.33 PP

  == domain 3  score: 3.4 bits;  conditional E-value: 0.037
                 --EEE--SS---E-S-..HH...H-TT...--EEE-.-S CS
       LRR_4   3 LevLdLsnNqltdipl..le...klpn...LkeLdLsgN 33 
                 L+++dL++N ++d +   ++   k      L++L L gN
  KOO22826.1 331 LTSVDLQSNSIRDDGAkaIAeamK--VnavLTTLRLDGN 367
                 889999999999744455224444..1245888888777 PP

  == domain 4  score: -0.2 bits;  conditional E-value: 0.51
                 --EEE--SS---E CS
       LRR_4   3 LevLdLsnNqltd 15 
                 L++L L +N + +
  KOO22826.1 359 LTTLRLDGNEIGS 371
                 6666666666654 PP

  == domain 5  score: 1.0 bits;  conditional E-value: 0.21
                 EEE--SS---E-S- CS
       LRR_4   5 vLdLsnNqltdipl 18 
                 +L+L++N + d + 
  KOO22826.1 417 TLYLGGNSIGDEGA 430
                 79999999988665 PP

  == domain 6  score: 1.9 bits;  conditional E-value: 0.11
                 -EEE--SS---E-S- CS
       LRR_4   4 evLdLsnNqltdipl 18 
                 ++L Ls N + d + 
  KOO22826.1 500 TTLFLSRNSIGDEGA 514
                 789999999998666 PP

  == domain 7  score: 0.2 bits;  conditional E-value: 0.37
                 --EEE-.-S CS
       LRR_4  25 LkeLdLsgN 33 
                 L++LdL  N
  KOO22826.1 583 LTKLDLEYN 591
                 555666444 PP

>> CbiG_N  Cobalamin synthesis G N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.3   0.3     0.014        41      53      79 ..     308     333 ..     300     335 .. 0.88
   2 ?    3.4   0.1     0.025        74      62      79 ..     344     361 ..     340     363 .. 0.90
   3 ?    3.5   0.1     0.024        72      62      79 ..     372     389 ..     366     391 .. 0.86
   4 ?    0.7   0.1      0.18   5.4e+02      64      79 ..     402     417 ..     398     419 .. 0.89
   5 !    5.0   0.2     0.008        24      53      79 ..     420     445 ..     417     447 .. 0.88
   6 ?    4.0   0.1     0.017        50      60      79 ..     454     473 ..     451     475 .. 0.91
   7 !    7.5   0.1    0.0013         4      60      79 ..     482     501 ..     479     503 .. 0.93
   8 ?    3.2   0.0      0.03        90      60      79 ..     510     529 ..     504     531 .. 0.88
   9 ?    2.6   0.1     0.047   1.4e+02      61      79 ..     539     557 ..     536     559 .. 0.89
  10 ?    0.3   0.1      0.24   7.2e+02      63      78 ..     569     584 ..     563     586 .. 0.88

  Alignments for each domain:
  == domain 1  score: 4.3 bits;  conditional E-value: 0.014
                 E-TT.TTHHHHHHHHHHHTT-EE-XXX CS
      CbiG_N  53 lsGhlggAnelAeeiaallgaepviTt 79 
                 lsG  + ++e A+ ia++l++++v+T+
  KOO22826.1 308 LSGN-EIGEEGAKAIAEALKVNAVLTS 333
                 6777.778999**************96 PP

  == domain 2  score: 3.4 bits;  conditional E-value: 0.025
                 HHHHHHHHHTT-EE-XXX CS
      CbiG_N  62 elAeeiaallgaepviTt 79 
                 + A+ ia+++++++v+Tt
  KOO22826.1 344 DGAKAIAEAMKVNAVLTT 361
                 6699*************9 PP

  == domain 3  score: 3.5 bits;  conditional E-value: 0.024
                 HHHHHHHHHTT-EE-XXX CS
      CbiG_N  62 elAeeiaallgaepviTt 79 
                 e A  ia++l++++v+Tt
  KOO22826.1 372 EGAIAIAEALKVNAVVTT 389
                 56889************9 PP

  == domain 4  score: 0.7 bits;  conditional E-value: 0.18
                 HHHHHHHTT-EE-XXX CS
      CbiG_N  64 AeeiaallgaepviTt 79 
                 A+ ia++l++++v+ t
  KOO22826.1 402 AKAIAEALKVNAVVNT 417
                 899**********988 PP

  == domain 5  score: 5.0 bits;  conditional E-value: 0.008
                 E-TT.TTHHHHHHHHHHHTT-EE-XXX CS
      CbiG_N  53 lsGhlggAnelAeeiaallgaepviTt 79 
                 l+G    ++e A+ ia++l++++v+T+
  KOO22826.1 420 LGGN-SIGDEGAKAIAEVLKVNAVLTS 445
                 6777.78899***************96 PP

  == domain 6  score: 4.0 bits;  conditional E-value: 0.017
                 HHHHHHHHHHHTT-EE-XXX CS
      CbiG_N  60 AnelAeeiaallgaepviTt 79 
                 +n+ A+ ia+++++++v+T+
  KOO22826.1 454 GNDGAKAIAEAMKVNAVLTS 473
                 7999**************96 PP

  == domain 7  score: 7.5 bits;  conditional E-value: 0.0013
                 HHHHHHHHHHHTT-EE-XXX CS
      CbiG_N  60 AnelAeeiaallgaepviTt 79 
                 +n+ A+ ia++l++++v+Tt
  KOO22826.1 482 GNDGAKAIAEALKVNAVVTT 501
                 7999***************9 PP

  == domain 8  score: 3.2 bits;  conditional E-value: 0.03
                 HHHHHHHHHHHTT-EE-XXX CS
      CbiG_N  60 AnelAeeiaallgaepviTt 79 
                 ++e A+ ia++l++++v+T+
  KOO22826.1 510 GDEGAKAIAEALKVNAVLTS 529
                 6788**************96 PP

  == domain 9  score: 2.6 bits;  conditional E-value: 0.047
                 HHHHHHHHHHTT-EE-XXX CS
      CbiG_N  61 nelAeeiaallgaepviTt 79 
                 ++ A+ i ++l++++v+Tt
  KOO22826.1 539 DDGAKAIVEALKVNAVVTT 557
                 67899*************9 PP

  == domain 10  score: 0.3 bits;  conditional E-value: 0.24
                 HHHHHHHHTT-EE-XX CS
      CbiG_N  63 lAeeiaallgaepviT 78 
                  A+ ia++l++++v+T
  KOO22826.1 569 GAKAIAKALEVNAVLT 584
                 5999**********99 PP

>> SpoU_sub_bind  RNA 2'-O ribose methyltransferase substrate binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.3   0.0     0.033        97       3      43 ..     316     357 ..     316     362 .. 0.80
   2 ?    4.5   0.0     0.014        41       4      42 ..     401     440 ..     399     451 .. 0.78
   3 !    6.6   0.1     0.003       9.1       4      43 ..     485     525 ..     485     534 .. 0.78
   4 ?    1.8   0.1       0.1     3e+02       3      44 ..     512     554 ..     512     558 .. 0.75
   5 ?   -0.4   0.0      0.49   1.5e+03       4      26 ..     541     563 ..     540     594 .. 0.63
   6 ?   -2.1   0.0       1.6   4.9e+03       2      20 ..     567     585 ..     566     606 .. 0.75

  Alignments for each domain:
  == domain 1  score: 3.3 bits;  conditional E-value: 0.033
  SpoU_sub_bind   3 yGlhaVleaLksgrriekllvteg.radkrleellklakkrg 43 
                    +G +a+ eaLk +  ++++ ++++  +d+  + + ++ k + 
     KOO22826.1 316 EGAKAIAEALKVNAVLTSVDLQSNsIRDDGAKAIAEAMKVNA 357
                    799*********999999988888766666678777777665 PP

  == domain 2  score: 4.5 bits;  conditional E-value: 0.014
  SpoU_sub_bind   4 GlhaVleaLksgrriekllvteg.radkrleellklakkr 42 
                    G +a+ eaLk +  +++l++  +   d+  + + + +k +
     KOO22826.1 401 GAKAIAEALKVNAVVNTLYLGGNsIGDEGAKAIAEVLKVN 440
                    889********999******99954444455666666555 PP

  == domain 3  score: 6.6 bits;  conditional E-value: 0.003
  SpoU_sub_bind   4 GlhaVleaLksgrriekllvteg.radkrleellklakkrg 43 
                    G +a+ eaLk +  +++l+++++   d+  + + +++k + 
     KOO22826.1 485 GAKAIAEALKVNAVVTTLFLSRNsIGDEGAKAIAEALKVNA 525
                    789*********99*********655555667777766654 PP

  == domain 4  score: 1.8 bits;  conditional E-value: 0.1
  SpoU_sub_bind   3 yGlhaVleaLksgrriekllvteg.radkrleellklakkrgi 44 
                    +G +a+ eaLk +  ++++ ++ +   d+  + +++++k + +
     KOO22826.1 512 EGAKAIAEALKVNAVLTSVDLQVNwIGDDGAKAIVEALKVNAV 554
                    79999******99888888888885444446788888877655 PP

  == domain 5  score: -0.4 bits;  conditional E-value: 0.49
  SpoU_sub_bind   4 GlhaVleaLksgrriekllvteg 26 
                    G +a+ eaLk +  +++l +  +
     KOO22826.1 541 GAKAIVEALKVNAVVTTLNFGFN 563
                    66777777777766666666555 PP

  == domain 6  score: -2.1 bits;  conditional E-value: 1.6
  SpoU_sub_bind   2 iyGlhaVleaLksgrriek 20 
                    ++G +a+  aL+ +  ++k
     KOO22826.1 567 VEGAKAIAKALEVNAVLTK 585
                    7899999999987755555 PP

>> HOASN  Haem-oxygenase-associated N-terminal helices
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.1   0.0      0.37   1.1e+03      13      38 ..     284     309 ..     274     315 .. 0.72
   2 ?    4.5   0.7     0.015        46      17      43 ..     316     342 ..     307     365 .. 0.80
   3 ?    3.7   0.4     0.027        80      18      44 ..     373     399 ..     362     420 .. 0.71
   4 ?    2.0   0.1     0.094   2.8e+02      17      42 ..     428     453 ..     423     455 .. 0.86
   5 ?    4.1   1.0      0.02        61      14      43 ..     453     482 ..     446     502 .. 0.78
   6 ?    0.8   0.1      0.22   6.7e+02      15      34 ..     482     501 ..     477     510 .. 0.76
   7 ?    4.5   0.2     0.016        47      16      41 ..     511     536 ..     504     553 .. 0.83
   8 ?   -2.3   0.0         2   6.1e+03      18      35 ..     541     558 ..     533     565 .. 0.76
   9 ?    2.6   0.1     0.059   1.8e+02      14      40 ..     565     591 ..     555     605 .. 0.83

  Alignments for each domain:
  == domain 1  score: 0.1 bits;  conditional E-value: 0.37
                 T--SHHHHHHHHHTSTT--HHHHHHH CS
       HOASN  13 nlpieeaalladalkvgasldqidla 38 
                 ++  e a  l +alkv+a +  ++l+
  KOO22826.1 284 KIGPEGASALGEALKVNAVVTELELS 309
                 45557788899*******99888776 PP

  == domain 2  score: 4.5 bits;  conditional E-value: 0.015
                 HHHHHHHHHTSTT--HHHHHHHHHHHH CS
       HOASN  17 eeaalladalkvgasldqidlalekll 43 
                 e a+ +a+alkv+a l  +dl  + + 
  KOO22826.1 316 EGAKAIAEALKVNAVLTSVDLQSNSIR 342
                 678899**********99999887764 PP

  == domain 3  score: 3.7 bits;  conditional E-value: 0.027
                 HHHHHHHHTSTT--HHHHHHHHHHHHH CS
       HOASN  18 eaalladalkvgasldqidlaleklla 44 
                  a  +a+alkv+a +  +dl  +k+  
  KOO22826.1 373 GAIAIAEALKVNAVVTTLDLRWSKIGV 399
                 556678888888888888887777743 PP

  == domain 4  score: 2.0 bits;  conditional E-value: 0.094
                 HHHHHHHHHTSTT--HHHHHHHHHHH CS
       HOASN  17 eeaalladalkvgasldqidlalekl 42 
                 e a+ +a+ lkv+a l  +dl l+ +
  KOO22826.1 428 EGAKAIAEVLKVNAVLTSVDLQLNSI 453
                 66889**************9998776 PP

  == domain 5  score: 4.1 bits;  conditional E-value: 0.02
                 --SHHHHHHHHHTSTT--HHHHHHHHHHHH CS
       HOASN  14 lpieeaalladalkvgasldqidlalekll 43 
                 +  + a+ +a+a+kv+a l  +dl l+ + 
  KOO22826.1 453 IGNDGAKAIAEAMKVNAVLTSVDLQLNSIG 482
                 5567789999******99999999988774 PP

  == domain 6  score: 0.8 bits;  conditional E-value: 0.22
                 -SHHHHHHHHHTSTT--HHH CS
       HOASN  15 pieeaalladalkvgasldq 34 
                   + a+ +a+alkv+a +  
  KOO22826.1 482 GNDGAKAIAEALKVNAVVTT 501
                 5567899********98765 PP

  == domain 7  score: 4.5 bits;  conditional E-value: 0.016
                 SHHHHHHHHHTSTT--HHHHHHHHHH CS
       HOASN  16 ieeaalladalkvgasldqidlalek 41 
                  e a+ +a+alkv+a l  +dl ++ 
  KOO22826.1 511 DEGAKAIAEALKVNAVLTSVDLQVNW 536
                 577999************99997765 PP

  == domain 8  score: -2.3 bits;  conditional E-value: 2
                 HHHHHHHHTSTT--HHHH CS
       HOASN  18 eaalladalkvgasldqi 35 
                  a+ + +alkv+a +  +
  KOO22826.1 541 GAKAIVEALKVNAVVTTL 558
                 567788999999987655 PP

  == domain 9  score: 2.6 bits;  conditional E-value: 0.059
                 --SHHHHHHHHHTSTT--HHHHHHHHH CS
       HOASN  14 lpieeaalladalkvgasldqidlale 40 
                 + +e a+ +a+al+v+a l ++dl  +
  KOO22826.1 565 IGVEGAKAIAKALEVNAVLTKLDLEYN 591
                 678999*************99998765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (615 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       396  (0.0220871); expected 358.6 (0.02)
Passed bias filter:                      285  (0.015896); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.63u 0.31s 00:00:00.94 Elapsed: 00:00:00.44
# Mc/sec: 4160.52
//
Query:       KOO22827.1  [L=918]
Description: insulin-degrading enzyme-like protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    9.8e-45  153.0   0.0      6e-28   97.9   0.0    2.2  2  Peptidase_M16_M  Middle or third domain of peptidase_M16
    1.4e-14   54.5   0.0      7e-07   29.4   0.0    3.6  3  Peptidase_M16_C  Peptidase M16 inactive domain
    4.5e-14   52.7   0.0    1.4e-13   51.1   0.0    1.8  1  Peptidase_M16    Insulinase (Peptidase family M16)


Domain annotation for each model (and alignments):
>> Peptidase_M16_M  Middle or third domain of peptidase_M16
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   97.9   0.0     1e-31     6e-28       1     159 [.     281     506 ..     281     512 .. 0.86
   2 !   52.9   0.0   5.4e-18   3.2e-14     156     278 ..     527     651 ..     520     652 .. 0.92

  Alignments for each domain:
  == domain 1  score: 97.9 bits;  conditional E-value: 1e-31
  Peptidase_M16_M   1 FrFkekeepsdyvsslaenm.qkyppedvlsgpyll.eeydpelikellssLtpenarivlvsk.e...............td........... 65 
                      F ++e+e+ +d v +la ++ +++pp++ ls++ l+  +++p+ ++ell  Ltp+++ ++++ k e               ++           
       KOO22827.1 281 FAYAEQEREIDAVRRLAISLlRRLPPDETLSAEALYsPNWEPTRLRELLGGLTPDRLVVTVSYKaEgdsgeglkaeggvaeEQasalvgapseg 374
                      99****************99566*************789*************************558887777666665550055666666666 PP

  Peptidase_M16_M  66 .....ekekwygteYsvekiseelleewksae.......eneeLhLPepNpFiptdfslk..........................kesesepa 121
                           + e+w+gte++v+++++++l++w +a         ++ ++LP++N++i+tdf+l+                            ++  + 
       KOO22827.1 375 esdtwQLEPWFGTEFTVKPVNSAQLARWWEAYegrpsepLSTPFELPPRNEYIATDFTLRhggetqrpmpaaevtrgaalavasvaAAAARPAR 468
                      6667799*********************977447888996667****************************99999998888766422344788 PP

  Peptidase_M16_M 122 kaPelirdtelvrlWykkDdtFkvPkasvrlklrspla 159
                      ++Pel+++++ +  ++k+D+tF +Pka v +++++   
       KOO22827.1 469 TPPELVHSSTRGLAFHKTDTTFATPKAIVCVSINTARP 506
                      899******************************98765 PP

  == domain 2  score: 52.9 bits;  conditional E-value: 5.4e-18
  Peptidase_M16_M 156 splasksprnavltelfvellkdslneylydAelAglsyslssskeglelsvsGYndklpvLlekvleklknf...eikedrFevikekllrel 246
                      s+ a++ +r  v+ e+ ++++ +++n+++y+A++Agl y+ls+s+ g +l+v+G+++kl +Lle+v+ +l        +   ++++ + ++ +l
       KOO22827.1 527 SEMARTRARMRVMREVAAKVTLERMNTDAYAATVAGLAYDLSPSELGWQLQVDGFSHKLGHLLERVCTELYAVasrPCDAPTLARVLNDYQLAL 620
                      5667889999************************************************************964566888888************ PP

  Peptidase_M16_M 247 knfklekpyqqarellsslleekawtleelle 278
                      +n     p+++a + ++ +l  ++++  ++l+
       KOO22827.1 621 RN-AGFAPSELAYNERLRCLDPTHVSAADRLA 651
                      **.677899*************9999999886 PP

>> Peptidase_M16_C  Peptidase M16 inactive domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.4   0.0   0.00032       1.9       7      39 ..     126     158 ..     123     162 .. 0.94
   2 !   12.2   0.0   2.3e-05      0.14      82     173 ..     169     264 ..     160     267 .. 0.91
   3 !   29.4   0.0   1.2e-10     7e-07      17     165 ..     647     837 ..     635     854 .. 0.73

  Alignments for each domain:
  == domain 1  score: 8.4 bits;  conditional E-value: 0.00032
                      HHHHHHHHSSGGGEEEEEEESS-HHHHHHHHHH CS
  Peptidase_M16_C   7 lkefykkfYrpenmvlaivGdvdheelvkliek 39 
                      l++f+ ++Y++  m l++ G  d ++l+ ++e+
       KOO22827.1 126 LRAFHSRYYHAGLMGLVALGGEDLDTLQGWVEE 158
                      89****************************997 PP

  == domain 2  score: 12.2 bits;  conditional E-value: 2.3e-05
                      EEEEEEECTCTHTTHHHHHHHHHHHHSSTTSHHHHHHHTTTTSESEEEEEEEEES...SCEEEEEEEEEECT...THHHHHHHHHHHHHHHHHH CS
  Peptidase_M16_C  82 slafegpskendeddlalavlntlLgggmesrLytnlrekeglaysvsafndsyr...dsglfgisatadpe...nveevvevilkelrklkke 169
                       l + +ps+ n +   + ++  +lLg++ +++   +l+  egla++  a++d      +  lf + + ++++   +v+ v++++l ++  l +e
       KOO22827.1 169 KLNWFVPSLLNAYGTKPEVLVGHLLGHEGKGSALEALK-LEGLATGLAAGVDEEMhtsNAALFDLEVELTSRgldRVDRVLDLVLGAVGHLSRE 261
                      578999999*****************************.***********99776999*************************99999888888 PP

                      TS-H CS
  Peptidase_M16_C 170 glte 173
                       +te
       KOO22827.1 262 -PTE 264
                      .665 PP

  == domain 3  score: 29.4 bits;  conditional E-value: 1.2e-10
                      GGGEEEEEEESS-HHHHHHHHHHHHTTSTHHSH...........................................CSGSCTSSSSSGGGSSEE CS
  Peptidase_M16_C  17 penmvlaivGdvdheelvkliekyfgdlkaska...........................................ppakptgepltpatlkkp 67 
                      ++++ +  +G v++e l +++ + +g+ k  ++                                           pp++ ++  +  a + ++
       KOO22827.1 647 ADRLAVLSAGEVTPESLAAFVGAQLGGAKGASKgegggdllgegggafitlyaggnlarsevrslfdlvgralgepPPTPSPRWEGCAALPAGG 740
                      5689999999999999999999999998877668999999999999999999999999999999999999999998444444444443455555 PP

                      EEEEEES...SS.SSEEEEEEEEEECTCTHTTHHHHHHHHHHHHSSTTSHHHHHHHTTTTSESEEEEEEEEESSCEEEEEEEEEECTTHHHHHH CS
  Peptidase_M16_C  68 pvvlkkl...de.eqahlslafegpskendeddlalavlntlLgggmesrLytnlrekeglaysvsafndsyrdsglfgisatadpenveevve 157
                        v++     +e +++ l l++++ +      + ala    lL++ m  +L+++lr+k++l+ysvs +++ ++++  f is+ + ++  +++++
       KOO22827.1 741 LLVRRAPnrnPEdQNCALDLYWQLGPD-----SRALAAKLSLLEHLMWTPLFDTLRTKQQLGYSVSGEVRHTNGCLGFLISVVSATHAPADIEA 829
                      555555533422256666666666666.....555555555555555555******************99999777777777777777777777 PP

                      HHHHHHHH CS
  Peptidase_M16_C 158 vilkelrk 165
                       + + l+ 
       KOO22827.1 830 RVYRFLEG 837
                      76666665 PP

>> Peptidase_M16  Insulinase (Peptidase family M16)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.1   0.0   2.3e-17   1.4e-13      43     136 ..       1      84 [.       1      97 [. 0.83

  Alignments for each domain:
  == domain 1  score: 51.1 bits;  conditional E-value: 2.3e-17
                    SBBSSSCH.HHHHHHHHHTTCEEEEEEESSEEEEEEEEEGGGHHHHHHHHHHHHHSBTTSHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHT CS
  Peptidase_M16  43 kgTkkyps.nklaeeleklGgslnAttsrentvYyvevlskdlekaldvladvfkaplleesevererkvvekeveavdaepekvveenlhaaay 136
                    +g+++yp+ ++  ++l+++Gg+ n  ts e+tv y++v +++l+ ald++ d+++ p ++     r       ev+a+++e +++++e+      
     KOO22827.1   1 MGSERYPDeDEWNRFLSAHGGEDNGETSAEHTVVYFDVSPSQLKPALDRFLDFMATPSFNVGSAAR-------EVKAIESEFQQARQEE----GN 84 
                    599***************************************************************.......6666666663333332....22 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (918 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       394  (0.0219756); expected 358.6 (0.02)
Passed bias filter:                      309  (0.0172346); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.64u 0.28s 00:00:00.92 Elapsed: 00:00:00.43
# Mc/sec: 6465.67
//
Query:       KOO22828.1  [L=560]
Description: amp-dependent synthetase and ligase, partial [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    6.4e-43  146.9   0.0    7.4e-42  143.4   0.0    2.0  1  AMP-binding  AMP-binding enzyme
  ------ inclusion threshold ------
       0.21   10.4   0.0       0.89    8.3   0.0    1.8  2  GH3          GH3 auxin-responsive promoter


Domain annotation for each model (and alignments):
>> AMP-binding  AMP-binding enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  143.4   0.0   8.3e-46   7.4e-42      46     422 ..     117     528 ..     110     529 .. 0.72

  Alignments for each domain:
  == domain 1  score: 143.4 bits;  conditional E-value: 8.3e-46
                  TT-EEEEEESSSHHHHHHHHHHHHTT-EEEEEETTS-HHHHHHHHHHHTESEEE.........ETCTCCCHHHHHHHHSCC-EECEEEEESCCS-HCC CS
  AMP-binding  46 kgdrVaillpnspewvvallailkaGavvvplnptltaeelayiledseakvli.........atvdselleklleaaakleavklvivldadellke 134
                  +++rVa  lp spe+ + +la+ ++ + ++plnp+l+ +e  + led  a +li         a          + a +  +   + +vl+ d  l  
   KOO22828.1 117 PHERVATSLPSSPELAACFLALSSL-LPLAPLNPDLSDAETLFELEDLPAAALIvpagrhsaaA----------RVAVP--RLGLQLLVLHPDLRLCG 201
                  789******************8887.99**************************5555443321..........22222..22233333333333333 PP

                  HCCCHCCCCSCTTS.............-TSCCCS-BTTSEEEEEEE--SSSS-EEEEEEHHHHHHHHHHHHHHHCSCCTTT-EEEESS-TTSCHHHHH CS
  AMP-binding 135 eelkeeeeseekae.............kpeeeeelkpddlayiiYTSGTTGkPKGVmlshrnlvanvaslkletrfklkeddvvlsilplahifglil 219
                  +   +++ s+++++                  +++  + +a+++ TSGTT +PK V l+h+++   +    ++ + +l+++   l ++pl+h  gl++
   KOO22828.1 202 AFTLTCATSAAVERavrasastasgsiA-AAGRRPGREAIALVMHTSGTTRRPKVVPLTHASMGVGALC--VRSTLRLDRTTLALNVMPLFHLHGLMV 296
                  3333333333333234445555566642.35667899*************************9766444..3455666666778************** PP

                  HHHHHHHTT-EEEE-TTCGCCHHHHHHHHHHHHT-SEEEEEHHH..HHHHHHCCCHH.CHHHHC...................CGTT-SEEEE..ESS CS
  AMP-binding 220 elllallsGatvvllpkdaaldpklllelieklkvtviagvPrv..leallesgalk.aakkak...................dlsslrlvll..gge 293
                  ++l++ l+Ga v +lp+++a++   +++++  l++t    +P++  +eall +++ + ++++a                      +s++l+++  + +
   KOO22828.1 297 NVLVTALAGAPVLCLPRFEAAQ---FFACLG-LRPTQPSRAPAAdtAEALLGAPTTApTWYSAVptihmevlryalsvrastgMPPSHQLAFIrnCSA 390
                  ******************9955...334444.6666555555532244554444443333332233333333333333333332223444433449** PP

                  -EBHHHHHHHHHHHTC.EEEEEEEEGGGSSECEECHCTTTCTSTTS-BEE-TTEEEEEE-TTTSCBEE.......TTSEEEEEEEETTS-SEBTT-HH CS
  AMP-binding 294 plspellrffralfge.evlegYGlTEttgvvtvlpleedkkklgsvGkplpgvevkivDeetgepvp.......dgeeGellvrgpgvmkgYlkkpe 383
                  +l p++ +++++ +++  vl +Y +TE++++++ +p+e+ ++kl svG++ +g ev +   +  +  +       +g+eGe+lvrg++v+ gY  +  
   KOO22828.1 391 ALAPSIGEQLEEALPGaLVLPTYAMTEALPICA-NPRERTRRKLASVGPA-AGPEVGVSSYSSDGSPGllnlegaPGVEGEVLVRGACVFGGYEPRAH 486
                  ****************88***************.77788889999***99.677777775554444446678888******************98855 PP

                  H....HHHHEEETCCEEEEEEEEEEETTSEEEEEEECCCEEEE CS
  AMP-binding 384 a....taeafdsegrwlrTGDlgrldedGyleivgRkkdlikl 422
                  +    + eaf  +g+wlrTGD g+ld +G+l+++gR k++i++
   KOO22828.1 487 LgydpNLEAFY-PGGWLRTGDKGWLDSEGHLHLTGRFKEVINR 528
                  56555888898.767**************************85 PP

>> GH3  GH3 auxin-responsive promoter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.3   0.0    0.0001      0.89      74     100 ..     238     263 ..     236     276 .. 0.88
   2 ?   -0.9   0.0     0.062   5.5e+02     391     421 ..     516     546 ..     515     549 .. 0.91

  Alignments for each domain:
  == domain 1  score: 8.3 bits;  conditional E-value: 0.0001
                 SS-SEEEEECCEETTEEEEEEESHHHH CS
         GH3  74 epiklfalsSGTtsgksKliPvteesl 100
                 e i l   +SGTt  ++K++P t+ s+
  KOO22828.1 238 EAIALVMHTSGTT-RRPKVVPLTHASM 263
                 56888899*****.*********9875 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 0.062
                 EEEEECCTEEE-SSSS-CCHHHHHHHHH.HH CS
         GH3 391 leFvgRknvvlsidgeklteeelqkaveeaa 421
                 l+++gR ++v++  gek++   +++a+ +a+
  KOO22828.1 516 LHLTGRFKEVINRAGEKISPLAVEHALLAAC 546
                 67899********************999776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (560 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       222  (0.0123822); expected 358.6 (0.02)
Passed bias filter:                      153  (0.00853366); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.49u 0.25s 00:00:00.74 Elapsed: 00:00:00.39
# Mc/sec: 4359.97
//
Query:       KOO22829.1  [L=216]
Description: hypothetical protein Ctob_002161 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
  ------ inclusion threshold ------
      0.098   11.8   0.0       0.13   11.4   0.0    1.1  1  PAE            Pectinacetylesterase
       0.16   12.5   6.8       0.22   12.1   6.8    1.5  1  Abhydrolase_6  Alpha/beta hydrolase family


Domain annotation for each model (and alignments):
>> PAE  Pectinacetylesterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   1.4e-05      0.13     148     213 ..      57     123 ..      47     132 .. 0.88

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 1.4e-05
         PAE 148 kkvlLsGcSAGglaailhcdklrellpkeakvkclsdaGfFl.dakdisgketlksiyeevvklqgv 213
                 ++vl+ G+S G++aa+ h+ + +++l    +v      G F+ da +  +++ +++ +e++++ +++
  KOO22829.1  57 ESVLMLGSSMGATAALQHAHRAARVLAFGPRVDLRRSHGSFVpDAAKNACAQAIDRALEQHAREHAS 123
                 689**************************************95678888899999999888887765 PP

>> Abhydrolase_6  Alpha/beta hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   6.8   2.4e-05      0.22      43     106 ..      35     104 ..       4     212 .. 0.73

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 2.4e-05
                    CS--HHHCHHHHHHHCCTT..TTSEEEEEETCHHHHHHHHHHCC..EE.EEES-..........----TTTS- CS
  Abhydrolase_6  43 ppldledladlaalldelaagggpvvlvGHSlGGalalaaaplalvvg.vlldppp........talpaglla 106
                    p  ++e la++ al+d+ aa +  v  +G S+G++ al+ a+ a  ++ ++  p           ++p++  +
     KOO22829.1  35 PRGGWEGLAHYGALIDAHAAPYESVLMLGSSMGATAALQHAHRA--ARvLAFGP-RvdlrrshgSFVPDAAKN 104
                    4567888999*9******988999999************77777..44344444.112222222244444433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (216 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       377  (0.0210274); expected 358.6 (0.02)
Passed bias filter:                      264  (0.0147247); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.40u 0.24s 00:00:00.64 Elapsed: 00:00:00.38
# Mc/sec: 1693.27
//
Query:       KOO22830.1  [L=474]
Description: cyclic nucleotide-binding protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    6.9e-21   74.6   9.8    8.6e-21   74.3   9.8    1.1  1  Ion_trans     Ion transport protein
    4.8e-09   36.2   0.0    4.2e-08   33.2   0.0    2.3  1  cNMP_binding  Cyclic nucleotide-binding domain
    2.6e-07   30.5   2.8    2.6e-07   30.5   2.8    2.2  2  Ion_trans_2   Ion channel


Domain annotation for each model (and alignments):
>> Ion_trans  Ion transport protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   74.3   9.8   1.4e-24   8.6e-21       8     244 ..       2     246 ..       1     247 [. 0.85

  Alignments for each domain:
  == domain 1  score: 74.3 bits;  conditional E-value: 1.4e-24
                 HHHHHHHHHHHHHCCCSSSSHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHTH...........HHHHHHCHSHHHHHHHHHHHHHHH.HH..HHHH..H CS
   Ion_trans   8 illlillncvflaletyfpedelektileilelvftaiftlemllkilalgl...........likkrYlrdpwnilDflvvlpsll.sl..vlse..e 90 
                 i +lil+++++++++  f+ d  e  ++ ++e++   +f+++ ++ ++++++            i+++Y++  w+++D  + +p+ l +l     e   
  KOO22830.1   2 IAMLILYAAIMVPVRIGFQVD-AE-GWVWTFEMLSSLVFIVDVIFTFRTAYIidysvwetrglPIAQKYMSG-WFWIDAPSSIPIELlELvvG--EasA 95 
                 6789**********9999994.44.7999*****************************************99.9*****99999988444431..2446 PP

                 HHHHHHHHHHHGGGGGGHHHCHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCCCC.....SCCSTSSSTTTSSSSSSHHHHHH CS
   Ion_trans  91 sllllsvlrlfrvlrllklisrleglrtlvtalirsvkdllnvlllllvvlfifaligvqlfkgklrekne.....caktwenpnngntnFdnfftall 184
                  + ++++lrlfr++rllkl++++e    l  + i++   l++++ l++ +l+   l+g   f ++++ +++       + +e++ +++ +  +++ +++
  KOO22830.1  96 DVAAMRMLRLFRLIRLLKLFKMSEIRTRLEDSEIHINVHLMRLVTLICQLLYCAHLLGCGWFYTTWFPTEDgrtwlL-RYDEEAADREVS-YKYMLSVY 192
                 79**********************99999999999999999999999999999999999999666664433444532.223333333444.349***** PP

                 HHHHHHTTSSHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
   Ion_trans 185 wlfrlmttegwgdilyatldekskvaliyfvifiilgsflllNlliaviadnfqeltere 244
                 w+++++tt+g+gdi+++   e        +++  +++s l+++++i+ i  ++++l +++
  KOO22830.1 193 WALTTLTTVGYGDIIAVSNTEI------AYATGSLIISSLIFSYIIGQIGASVASLDSQT 246
                 *********************9......*************************9998886 PP

>> cNMP_binding  Cyclic nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.2   0.0     7e-12   4.2e-08       3      88 ..     338     439 ..     336     440 .. 0.77

  Alignments for each domain:
  == domain 1  score: 33.2 bits;  conditional E-value: 7e-12
                   EE-TT-EEE-TTSB-SEEEEEEES-EEEE...................EEETTS.EEEEEEE-TTEEESHHHHHHTS--SSEEEESSTEEEEEEEHH CS
  cNMP_binding   3 sfkagevifrqGdpadslyivlsGevrvy...................rlsedgkevvlavlgpGdlfGelalltgeprtatvvAltdsellalprd 80 
                    fka+evif++Gd+ + l ++++Ge+ v                        d  + v+ ++++  ++G+  ll+  +r+ t  A++d+e++ ++++
    KOO22830.1 338 FFKANEVIFHKGDASRDLLFLTKGEAGVLlradetitemritptsqykLDIVD-GS-VTIEMRSEGVLGTDTLLG-RRRAKTHMAISDCEVFLITKE 431
                   59**************************8555555555544333333222222.23.233468889********8.99******************* PP

                   HHHHHHHH CS
  cNMP_binding  81 dflellqq 88 
                   d+  ll+ 
    KOO22830.1 432 DLTHLLEH 439
                   ****9986 PP

>> Ion_trans_2  Ion channel
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   1.5      0.45   2.7e+03       4      37 ..       3      44 ..       1      58 [. 0.63
   2 !   30.5   2.8   4.3e-11   2.6e-07      20      73 ..     185     235 ..     146     241 .. 0.74

  Alignments for each domain:
  == domain 1  score: -1.6 bits;  conditional E-value: 0.45
                 HHTCHHHHHHHHT...........T.---HHHHHHHHHHHHT CS
  Ion_trans_2  4 llvlifgaviysl.......eegwe.kwsfldalYfsfvtlt 37
                  ++++++a+++ +        egw  +++ l++l f + +++
   KOO22830.1  3 AMLILYAAIMVPVrigfqvdAEGWVwTFEMLSSLVFIVDVIF 44
                 556666666666677777765554114444556666555554 PP

  == domain 2  score: 30.5 bits;  conditional E-value: 4.3e-11
                  .T---HHHHHHHHHHHHTTS----SSTT-----HHHHHHHHHHHHHHHHHHHHH CS
  Ion_trans_2  20 wekwsfldalYfsfvtltTiGYGdivpetdagrlftivyillGlalfalflavl 73 
                  +    ++ ++Y++++tltT+GYGdi++++++  + ++  +++  ++f++++  +
   KOO22830.1 185 Y---KYMLSVYWALTTLTTVGYGDIIAVSNTEIAYATGSLIISSLIFSYIIGQI 235
                  4...78889******************988854444555555555666555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (474 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       573  (0.0319594); expected 358.6 (0.02)
Passed bias filter:                      411  (0.0229238); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.48u 0.24s 00:00:00.72 Elapsed: 00:00:00.39
# Mc/sec: 3688.02
//
Query:       KOO22831.1  [L=260]
Description: hypothetical protein Ctob_002167 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.1e-13   50.8  12.4    3.7e-13   50.0  12.4    1.4  1  FA_hydroxylase  Fatty acid hydroxylase superfamily
     0.0067   16.6   0.8      0.022   14.9   0.8    1.9  1  ATPase_gene1    Putative F0F1-ATPase subunit Ca2+/Mg2+ transp


Domain annotation for each model (and alignments):
>> FA_hydroxylase  Fatty acid hydroxylase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.0  12.4   4.2e-17   3.7e-13       2     131 ..     113     243 ..     112     249 .. 0.79

  Alignments for each domain:
  == domain 1  score: 50.0 bits;  conditional E-value: 4.2e-17
  FA_hydroxylase   2 llallledfveYwvHrllHrvkllwrrlHkvHHsseapta.laalrahpleallla.llllllllllg.plsalllvlvlaallelliHsg..lh 91 
                     +++l+++ +++Y++Hr++H++++ w+  H+ HH+++   a ++a + +++e++++  ++++l  +ll+ +   l++ + +  l +lliH+    +
      KOO22831.1 113 TAILVGHAIGYYLAHRWMHTKQMYWA--HRFHHRFNMHVApVTANAVSLAEYVVAYmAPFILGSALLQpDRLSLFVAVGIISLNNLLIHTPrlAD 205
                     5789999************9875666..*****99866555**************97888888888884444455599999**********6443 PP

  FA_hydroxylase  92 vslgwllerllatpraHrlHHskneegnfgvllslwDrlf 131
                     +s + + ++l++++++H  HH+k + ++ +  +  +Drl+
      KOO22831.1 206 LSARLV-PWLFVSTEMHLEHHRKLTTHWAAP-TISIDRLI 243
                     444444.899***************555554.66777775 PP

>> ATPase_gene1  Putative F0F1-ATPase subunit Ca2+/Mg2+ transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.8   2.4e-06     0.022      11      35 ..     111     136 ..     105     138 .. 0.82

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 2.4e-06
  ATPase_gene1  11 lvapillggllGywLDk.kfgtspwf 35 
                   +v++il+g ++Gy+L + +++t+ ++
    KOO22831.1 111 MVTAILVGHAIGYYLAHrWMHTKQMY 136
                   9*************766488995554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (260 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       544  (0.0303419); expected 358.6 (0.02)
Passed bias filter:                      352  (0.019633); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.40u 0.23s 00:00:00.63 Elapsed: 00:00:00.37
# Mc/sec: 2111.05
//
Query:       KOO22832.1  [L=383]
Description: phospholipase carboxylesterase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
      2e-09   37.3   0.3    3.3e-09   36.6   0.3    1.2  1  Esterase_phd   Esterase PHB depolymerase
    2.2e-06   27.5   0.0    3.5e-06   26.9   0.0    1.4  1  Esterase       Putative esterase
    6.9e-06   26.8   1.3      1e-05   26.3   1.3    1.3  1  Abhydrolase_6  Alpha/beta hydrolase family
    4.2e-05   23.3   0.1    0.00025   20.7   0.1    2.1  1  Peptidase_S15  X-Pro dipeptidyl-peptidase (S15 family)
    9.9e-05   22.2   0.0    0.00017   21.4   0.0    1.3  1  Abhydrolase_2  Phospholipase/Carboxylesterase
    0.00023   20.9   0.1    0.00032   20.4   0.1    1.3  1  Abhydrolase_1  alpha/beta hydrolase fold
    0.00045   19.8   0.0    0.00096   18.7   0.0    1.6  1  Peptidase_S9   Prolyl oligopeptidase family
  ------ inclusion threshold ------
      0.045   12.9   0.0      0.078   12.1   0.0    1.3  1  DUF2048        Abhydrolase domain containing 18
      0.048   12.3   0.0       0.09   11.4   0.0    1.4  1  AXE1           Acetyl xylan esterase (AXE1)
       0.16   11.8   0.0       0.61   10.0   0.0    1.8  2  Lipase_3       Lipase (class 3)
       0.18   12.2   0.1        3.5    8.0   0.0    2.4  2  CBM_48         Carbohydrate-binding module 48 (Isoamylase N-t
       0.18   11.3   0.0       0.25   10.9   0.0    1.2  1  DUF2974        Protein of unknown function (DUF2974)


Domain annotation for each model (and alignments):
>> Esterase_phd  Esterase PHB depolymerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.6   0.3   2.2e-12   3.3e-09       7     131 ..      38     169 ..      29     194 .. 0.73

  Alignments for each domain:
  == domain 1  score: 36.6 bits;  conditional E-value: 2.2e-12
  Esterase_phd   7 lppGarrgamplvvmlhGctqsveefaaGtrmnlladklGvvvlypeqsl.....ranaqkcwnwykdtdraGrGeaavvv...alvdalvdeh.rv 94 
                   + p a r  +p ++mlhG t +++ +a  t m  +a   G+ ++ p+  +         ++ wn     d+a   + + v+   a++d l +    +
    KOO22832.1  38 IAPKAAR--VPAILMLHGNTADADTLALQTNMTQFAPARGFFLVMPDGVQtpgskHRTMDRSWNSGACCDEAYTHNVDDVAflsAVIDDLLHRFpHI 132
                   4566667..9************************************965511111334556788776666666655555550004455544433257 PP

  Esterase_phd  95 daarvyvaGlsaGaaladllalhypdvfaavalhsGl 131
                   d+  vy++G s G+++a   a   p+++a va   G 
    KOO22832.1 133 DPGAVYMTGTSLGGSMALRAACSIPEKLAGVASDVGS 169
                   *****************************99977664 PP

>> Esterase  Putative esterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.9   0.0   2.3e-09   3.5e-06      11     145 ..      30     165 ..      21     215 .. 0.76

  Alignments for each domain:
  == domain 1  score: 26.9 bits;  conditional E-value: 2.3e-09
                 EEEE.CC...GGTTTEEEEEEE--TTHHCCHHHHHCHHCCCCHCCT.EEEEEECCCSS-TTTT..TSBTTSBB.TTEEETTCCCCCCHCHHHHTHHHHH CS
    Esterase  11 qvyLPedy..spgrkypvvylldGltgwdqnfrakelleslaregeiaeviivvvprggessf..ysdwdlgarfyenategpgaeayetfltqeLlpl 105
                  v+ P     +++ + p++++l+G t   + +  ++ +++ a  +++  v++++v   g +    + +w+ ga  +e+ t +    a+ +++ + Ll  
  KOO22832.1  30 KVLFPTVEiaPKAARVPAILMLHGNTADADTLALQTNMTQFAPARGFFLVMPDGVQTPGSKHRtmDRSWNSGACCDEAYTHNVDDVAFLSAVIDDLL-- 126
                 44444444558899**********7777788889999999999999999999999766655444499999996666666666666666666666555.. PP

                 HHHHCSEECCCEEEEEETHHHHHHHHHHHCSTTTCCEEEE CS
    Esterase 106 ldanfrtapdgravaGqSmGGlgALilalkhpdrFgsvss 145
                      +++p +   +G S+GG++AL +a   p++ + v+s
  KOO22832.1 127 -HRFPHIDPGAVYMTGTSLGGSMALRAACSIPEKLAGVAS 165
                 .444556666699********************9887776 PP

>> Abhydrolase_6  Alpha/beta hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.3   1.3   6.8e-09     1e-05       1     216 [.      48     331 ..      48     334 .. 0.52

  Alignments for each domain:
  == domain 1  score: 26.3 bits;  conditional E-value: 6.8e-09
                    EEEE--GC.....G.CHHHHHHHHCCT.CEEEEE--...TTSTS-GGCS--HHH...........CHHH...HHHHCCTT.......TTSEEEEEE CS
  Abhydrolase_6   1 vlllHGagssassW.lvapLaallaag.vhvlapDl...pGhGrsdpppldled...........ladl...aalldelaa.....gggpvvlvGH 72 
                    +l+lHG  ++a+   l++++  +++a+ +  ++pD    pG     +++ +++            ++d+   +a++d+l +     ++g+v+  G 
     KOO22832.1  48 ILMLHGNTADADTLaLQTNMTQFAPARgFFLVMPDGvqtPGSK-HRTMDRSWNSgaccdeaythnVDDVaflSAVIDDLLHrfphiDPGAVYMTGT 142
                    799***9988888853667766666666544888884444442.24455444333222222222223333456666666667888*********** PP

                    TCHHHHHHHHHHCC....EEEEES-................----TTT.............S----TTHHHHHHTT-C.....CCCHCCH...... CS
  Abhydrolase_6  73 SlGGalalaaapla..lvvgvlldp..............pptalpagl.............laaalelllallallrl.....lawlsre...... 128
                    SlGG++al+aa +    ++gv+ d               +       +             ++a +   + ++a++ +      +++  +      
     KOO22832.1 143 SLGGSMALRAACSIpeKLAGVASDVgsfeayngmscasaC-------EaneadgytycvwnQSAHAGCTRDAYARRLPehrlpQTYS--Cdaqrhk 229
                    *********6666699778888888444443333332220.......0222333344444433333333333332222111213333..0223353 PP

                    S-HSCCCCHHHCCCCHCHCCCGHHHHCCHHC.HTTCCHHTT-TTGC.....EEE..CTT-C...........HHHHCHHCCCH...STTEEET..C CS
  Abhydrolase_6 129 plprlfladedadaawrarlarlaallaglg.llpaaawadlpvpl.....lvl..ggeDp...........lvprllerlla...qagarlp..v 200
                    p+p ++la       w ++++ ++   +++  +++   + +  +p+     ++l  +g Dp           +    l+ +     ++++ +    
     KOO22832.1 230 PVP-TLLA-----NGWLDPVSNVSGGITYPTiANTSGSYNTSFPPTdfvtsFLLetWGCDPhaesvisfhngT----LRNYTScrtWPSCATNvtL 315
                    444.7777.....888888888887777666544444555555555555554556788888444444322221....3333333343444443335 PP

                    E...SSS.-HHHHSHHH CS
  Abhydrolase_6 201 vlpgaGH.lphleepde 216
                     l +aGH ++ + +pd 
     KOO22832.1 316 CLSDAGHkWFGD-HPDI 331
                    555888855444.7775 PP

>> Peptidase_S15  X-Pro dipeptidyl-peptidase (S15 family)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.7   0.1   1.7e-07   0.00025      14     179 ..      39     209 ..      28     250 .. 0.69

  Alignments for each domain:
  == domain 1  score: 20.7 bits;  conditional E-value: 1.7e-07
                    .TTSSSEEEEEEEESS-CCT.CCCCHTTCHHCCHGGGHHHHHTT-EEEEEE-TTSTTS-S---TT...............TTTHHHHHHHHHHHHH CS
  Peptidase_S15  14 tkskeklPvlltrtPYgkndelasdkalaleelelqdkvfvarGYavVvqdvrGtggSeGeftvg...............dsdeaedgadvidWla 94 
                    +++++++P++l+    + +  + + ++++++          arG+  V+ d++ t gS+  +                    d+++  ++vid l 
     KOO22832.1  39 APKAARVPAILMLHGNTADADTLALQTNMTQF-------APARGFFLVMPDGVQTPGSKHRTM-DrswnsgaccdeaythNVDDVAFLSAVIDDLL 126
                    45788999999987766544444444444443.......348999999999999999984433.33677779999997777777777889999999 PP

                    HC..TTEEEEEEEEEECHHHHHHHHHCTT--TTEEEEEEECE-S-TCCCCSECTTEEBCCHHHHHHHHHCCCCHHTSSS-STTHHHH CS
  Peptidase_S15  95 kq..pwsnGkVgmtGiSYlGttqllaaatgvpalkaivpeaaisdlyddyyregGlvrapgglswedldllaealtsrradegdalk 179
                    +       G V mtG+S +G ++l aa++ +++l+ +++ ++ +  y+  +    + +a++++     ++   ++++     +da++
     KOO22832.1 127 HRfpHIDPGAVYMTGTSLGGSMALRAACSIPEKLAGVASDVGSFEAYN-GMSCASACEANEADGY---TYCVWNQSAHAGCTRDAYA 209
                    97746788****************************************.7777777777777666...3333333333333333333 PP

>> Abhydrolase_2  Phospholipase/Carboxylesterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.4   0.0   1.2e-07   0.00017       8     135 ..      39     165 ..      34     182 .. 0.83

  Alignments for each domain:
  == domain 1  score: 21.4 bits;  conditional E-value: 1.2e-07
                    --SS---EEEEEE--TT--S...HHHHHHHH.TT--TTEEEEEE---EEE-GGGTT-EEE-SS-B--SSTTS-B-HHHHHHHHHHHHHHHHHHHHT CS
  Abhydrolase_2   8 spkdkaqavviflHGlGdsg...hawaeaakteaalpnikfifphgpelpvtlnggmrmpaWfdlvglspekkedeagikksaekleelidaelkk 100
                    +pk +  +++++lHG  +++    ++ ++++ +a+   + +++p g + p      m   +W +    ++   ++     + +  l+++id  l+ 
     KOO22832.1  39 APKAARVPAILMLHGNTADAdtlALQTNMTQ-FAPARGFFLVMPDGVQTPGSKHRTM-DRSWNSGACCDEAYTHNV----DDVAFLSAVIDDLLHR 128
                    677778899*******999955455555555.788888999*********9999999.478988888888873333....4456789999999998 PP

                    T..--GGGEEEEEETHHHHHHHHHHHT-SS--SEEEE CS
  Abhydrolase_2 101 g..ipssriiigGFSqGaalalylaltlpkklggiva 135
                       i+  ++ + G S G+ +al +a + p+kl+g+ +
     KOO22832.1 129 FphIDPGAVYMTGTSLGGSMALRAACSIPEKLAGVAS 165
                    888*******************************976 PP

>> Abhydrolase_1  alpha/beta hydrolase fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.4   0.1   2.1e-07   0.00032       1     129 [.      46     197 ..      46     263 .. 0.78

  Alignments for each domain:
  == domain 1  score: 20.4 bits;  conditional E-value: 2.1e-07
                    SEEEEE-STTT...CGGGGTTGHHHHHHHHTTSEEEEEEETTSTTSSSTTTGB................CHHSHHHHHHHHHHH...HHHCTTSSE CS
  Abhydrolase_1   1 pvlvilhGlpg...ssdvwaerglapaLakdgfdvillDlrGvgySspapacin...............ddygtasvaddldri...ldalgddkl 75 
                    p++++lhG ++   ++ ++ +  + +  + +gf+++++D    + S+ +   ++               dd  +  + +++d +     + + + +
     KOO22832.1  46 PAILMLHGNTAdadTLALQTN--MTQFAPARGFFLVMPDGVQTPGSKHRTMDRSwnsgaccdeaythnvDDVAF--LSAVIDDLlhrFPHIDPGAV 137
                    79*********5555555999..88888888********99999999999888888899999877777666666..88888866564567778888 PP

                    EEEEETHHHHHHHHHHHHHGGGEEEEEEESE......CSSCCHHHHHHHHHHHHHHCHHC CS
  Abhydrolase_1  76 tlvGhSmGGmialayaaeyperVkalvllga......idpaaslieaqrqqaksfpdffd 129
                    ++ G S+GG +al +a   pe+ ++++++ +       +++as  ea++   +++  +++
     KOO22832.1 138 YMTGTSLGGSMALRAACSIPEKLAGVASDVGsfeaynGMSCASACEANEADGYTYCVWNQ 197
                    8****************************9977666655666655555555555555555 PP

>> Peptidase_S9  Prolyl oligopeptidase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.7   0.0   6.4e-07   0.00096      48     154 ..     118     241 ..      63     253 .. 0.73

  Alignments for each domain:
  == domain 1  score: 18.7 bits;  conditional E-value: 6.4e-07
                   HHHHHHHHHHTT.S--GGGEEEEEETHHHHHHHHHHHH-GGG-SEEEEESE---CCCHHCSTTSTHH.HCCCC--TTTCHHHHHHHHHH-CGGG--. CS
  Peptidase_S9  48 fiaaaealakeg.yvdserlaitGgSyGGyltgaalnqrpdlFkaavaevpvvdvlrydsdtdllte.eymewgnpeeneegykelspyspldnvk. 141
                   + a+++ l  ++  +d+  +++tG+S GG +++ a+ + p++ +++++ v+ ++  + +s  ++ ++ e ++++   +n+  +  +   ++++++  
    KOO22832.1 118 LSAVIDDLLHRFpHIDPGAVYMTGTSLGGSMALRAACSIPEKLAGVASDVGSFEAYNGMSCASACEAnEADGYTYCVWNQSAHAGCTRDAYARRLPe 214
                   45899999***************************************************99988555467776665555555545544444444334 PP

                   ..............---EEEEEEETT- CS
  Peptidase_S9 142 ..............aypplLlihGlaD 154
                                 + +p+Ll  G++D
    KOO22832.1 215 hrlpqtyscdaqrhKPVPTLLANGWLD 241
                   445555566666666666666666666 PP

>> DUF2048  Abhydrolase domain containing 18
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   5.2e-05     0.078     165     204 ..     124     163 ..     108     184 .. 0.85

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 5.2e-05
     DUF2048 165 vllhwlereGyGplgltGlSmGGhmaslaasnwpkplvlv 204
                  llh   +  +G + +tG S+GG ma  aa+  p  l+ v
  KOO22832.1 124 DLLHRFPHIDPGAVYMTGTSLGGSMALRAACSIPEKLAGV 163
                 5677777778999*********************999866 PP

>> AXE1  Acetyl xylan esterase (AXE1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0     6e-05      0.09     161     205 ..     122     167 ..      34     177 .. 0.75

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 6e-05
                 HHHHHHTSTTEEEEEEEEEEETHHHHHHH.HHHHH-SS-SEEEEES CS
        AXE1 161 lveivaslpevDeeRvavlGasqGGalal.avaalekrikavvady 205
                 + ++++ +p++D+  v ++G+s GG++al a+ ++ ++++ v++d+
  KOO22832.1 122 IDDLLHRFPHIDPGAVYMTGTSLGGSMALrAACSIPEKLAGVASDV 167
                 3467889**********************44557888999888887 PP

>> Lipase_3  Lipase (class 3)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   0.0   0.00041      0.61      55      87 ..     122     157 ..     106     168 .. 0.79
   2 ?   -1.5   0.0       1.3     2e+03      11      48 ..     269     304 ..     262     319 .. 0.76

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.00041
                 HHHHHHHTT...-EEEEEEEETHHHHHHHHHHHHHH CS
    Lipase_3  55 lkrllekyp...eysivvtGHSLGgalAlLaaldlv 87 
                 +++ll+++p      +++tG SLGg++Al aa  + 
  KOO22832.1 122 IDDLLHRFPhidPGAVYMTGTSLGGSMALRAACSIP 157
                 56667777744235799***********98887765 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 1.3
                 ----------EEE-HHHH-GTT-EEEHHHHHHHHS-HH CS
    Lipase_3  11 kdwltdldfslteakellekeggkvhsgfleayeeslr 48 
                 +d++t +  +   ++++ e ++++ h+g l+ y+ s+r
  KOO22832.1 269 TDFVTSFLLETWGCDPHAE-SVISFHNGTLRNYT-SCR 304
                 5667777777777777655.59999****99999.544 PP

>> CBM_48  Carbohydrate-binding module 48 (Isoamylase N-terminal domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.4   0.1      0.28   4.2e+02      10      23 ..     186     200 ..     179     209 .. 0.74
   2 ?    8.0   0.0    0.0024       3.5      11      34 ..     299     324 ..     292     330 .. 0.84

  Alignments for each domain:
  == domain 1  score: 1.4 bits;  conditional E-value: 0.28
                 C.EEEEEEEE-TTSS CS
      CBM_48  10 e.kgvnfrvwapnAe 23 
                 e +g++++vw+++A 
  KOO22832.1 186 EaDGYTYCVWNQSAH 200
                 336888999988875 PP

  == domain 2  score: 8.0 bits;  conditional E-value: 0.0024
                 EEEEEEEE-TTSSEEEEEECGTT..T CS
      CBM_48  11 kgvnfrvwapnAekVslvldfnn..w 34 
                 + + +r w + A++V+l+l++ +  w
  KOO22832.1 299 NYTSCRTWPSCATNVTLCLSDAGhkW 324
                 46899****************98655 PP

>> DUF2974  Protein of unknown function (DUF2974)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   0.00017      0.25      82     112 ..     133     163 ..     119     227 .. 0.81

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00017
     DUF2974  82 segkiylgGhSkGGnlAvyaamnaeddlqer 112
                  +g++y++G S GG++A+ aa+ ++++l   
  KOO22832.1 133 DPGAVYMTGTSLGGSMALRAACSIPEKLAGV 163
                 5789*******************99998744 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (383 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       371  (0.0206927); expected 358.6 (0.02)
Passed bias filter:                      295  (0.0164538); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.50u 0.27s 00:00:00.77 Elapsed: 00:00:00.43
# Mc/sec: 2654.73
//
Query:       KOO22833.1  [L=179]
Description: hypothetical protein Ctob_002165 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    4.7e-06   27.4   0.0    7.4e-06   26.8   0.0    1.3  1  2OG-FeII_Oxy_3  2OG-Fe(II) oxygenase superfamily


Domain annotation for each model (and alignments):
>> 2OG-FeII_Oxy_3  2OG-Fe(II) oxygenase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.8   0.0   4.1e-10   7.4e-06       2      90 ..      83     171 ..      82     176 .. 0.79

  Alignments for each domain:
  == domain 1  score: 26.8 bits;  conditional E-value: 4.1e-10
                     EEEEE-TT-EEEEE-SS----TT.-.EEEEEEEEE.....E.T-B--EEE.....................---TT-EEEEE-..B-TEEE--B. CS
  2OG-FeII_Oxy_3   2 qvlrygegqeykpHvDnfekeegsgqrrltvllyLne.kes.eeGGelelyekdk...........eavkikpkkgrlvlFesdellpHevlpvt 83 
                     +++ry +g+ ++pH+D          + ltvl+ L+  + +   GG  ++++ +            ++  i+p +g+ ++++ +++  H++lp++
      KOO22833.1  83 MINRYTTGGMFDPHQDG---------HALTVLVPLSApDMDfSAGG-TAFWSGEVtsdssvaksfpPSLVIRPPAGTGIFWRGHIT--HAGLPIR 165
                     689**999********3.........69*******99755545666.555555556666777888899999************888..*****96 PP

                     -SS-EEE CS
  2OG-FeII_Oxy_3  84 kggeRls 90 
                     +g  R +
      KOO22833.1 166 SG-MRHV 171
                     65.6655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (179 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       183  (0.0102069); expected 358.6 (0.02)
Passed bias filter:                      171  (0.00953762); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.25s 00:00:00.62 Elapsed: 00:00:00.40
# Mc/sec: 1346.52
//
Query:       KOO22834.1  [L=622]
Description: chromosome-associated kinesin kif4a-like protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    5.5e-80  268.8   0.0    8.9e-80  268.1   0.0    1.3  1  Kinesin      Kinesin motor domain
    4.4e-24   85.1   0.0    1.1e-23   83.9   0.0    1.6  1  Microtub_bd  Microtubule binding
    0.00028   20.4   0.0    0.00092   18.8   0.0    2.0  1  IQ           IQ calmodulin-binding motif
    0.00094   19.6   8.3    0.00094   19.6   8.3    1.9  2  DUF737       Protein of unknown function (DUF737)
  ------ inclusion threshold ------
      0.029   13.3   4.2      0.049   12.5   4.2    1.3  1  DUF677       Protein of unknown function (DUF677)
      0.039   14.3   6.0      0.066   13.5   1.9    2.5  2  TSC22        TSC-22/dip/bun family
      0.066   12.3  11.2       0.12   11.5  11.2    1.4  1  Atg14        Vacuolar sorting 38 and autophagy-related subuni
      0.094   12.7   0.9          4    7.4   0.0    2.3  2  ResIII       Type III restriction enzyme, res subunit
        0.2   10.1  11.3       0.31    9.5  11.3    1.3  1  Macoilin     Macoilin family
        3.1    7.9  24.7          8    6.5  24.4    1.9  1  TPR_MLP1_2   TPR/MLP1/MLP2-like protein


Domain annotation for each model (and alignments):
>> Kinesin  Kinesin motor domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  268.1   0.0     5e-83   8.9e-80      23     329 ..      27     333 ..       5     339 .. 0.92

  Alignments for each domain:
  == domain 1  score: 268.1 bits;  conditional E-value: 5e-83
                 TCTCEEEEEEEEECTTSCEEEEESEEEETTS-HHHHHHHHHHHHHHHHHTTSEEEEEEEESTTSSHHHHHTBC..........TTTSBSHHHHHHHHHH CS
     Kinesin  23 ekkeeekkskkenkeeeekkfkFdkvfdeeatqeevyeetakplvesvleGynatifaYGqtgsGKTyTmegk..........eeeeeGiipraleelF 111
                 +++ + ++ + ++ + ++ +f+ d++f+++a+q+ev++ + +plv+++ +Gyna+i+aYGqtgsGKTyTm g           e+++ Gi+pra+ +lF
  KOO22834.1  27 SSDVSVVDGQPDKVRAKDLQFNLDHAFGSDAKQAEVFNVIGAPLVQRITDGYNACIIAYGQTGSGKTYTMLGPenakldgsggETADLGIVPRACLQLF 125
                 4566777888899999*******************************************************************999************* PP

                 HHHHHCTTTHEEEEEEEEEEEEEETTEEEETTSTTTTSTSSEBEEEECTTSCCEEETTS--EEESSHHHHHHHHHHHHHHHTSTTSSCTSHHCCSEEEE CS
     Kinesin 112 esikkekeekekefsvkvsylEiYneeiyDLLeskkskkkkklkiredskkgevyvkgltevevksaeevlellekgeknrkvaetklneeSSRSHavf 210
                 +++ +        ++v+ sy+E+Yn+++ DLL+ +  ++k+ l +re  + g+v  +g+t ++vksa++v++ ++ g+++r va+ ++n +SSR H ++
  KOO22834.1 126 KMLPA-------GYTVTTSYMEVYNDNVNDLLTADY-TNKEYLPLRETVT-GHVEPDGITRRQVKSASDVMKAIALGDSRRVVAAMAMNPRSSRGHGLI 215
                 ***54.......699*******************95.66668*****999.56********************************************98 PP

                 EEEEEEEETTTTTCEEEEEEEEEEEEEEECCCHHHHSS.......TCHHHHHHHHHHHHHHHHHHHHHHHHHHTCCTSTSCGGGSHHHHHTGGGHSSSS CS
     Kinesin 211 titleqknlkeeteekvkisklnLvDLAGsErasktga.......aegerlkEaaniNkSLlaLgrvisaLaekkkskhipYRdSkLTrlLqdsLgGns 302
                  i+    +   +    +++++l+LvDLAG E  +k+ga       a + r++Ea+ iN SLlaL++v++aLa+k  +  +p+RdSkLTrlLq+sL Gn+
  KOO22834.1 216 AIETYTDK---G----MSHGRLCLVDLAGMESSKKSGAvdvsgpsAAKARQEEAKRINMSLLALSNVVNALASK-GAMKVPFRDSKLTRLLQSSLAGNC 306
                 87755544...2....3589****************98888888778999************************.999********************* PP

                 EEEEEEEE-TBGGGHHHHHHHHHHHHH CS
     Kinesin 303 ktlmivtvspssenleetlstlkfaer 329
                 k + +v++  +++n+ee + tl+fa+ 
  KOO22834.1 307 KAAFVVMLRGEKQNVEEATLTLRFAQA 333
                 ************************985 PP

>> Microtub_bd  Microtubule binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   83.9   0.0   5.9e-27   1.1e-23      21     149 .]      10     150 ..       9     150 .. 0.89

  Alignments for each domain:
  == domain 1  score: 83.9 bits;  conditional E-value: 5.9e-27
                  B-EEEEEEECCCS-T.EEEETT..T.......TTTEEEE-SEEEECTTHCCCCCCCC.HHHHHHHHTT--EEEEEEES.................... CS
  Microtub_bd  21 niRvfarvrpelesekakikfp..e....eekkkkkefsFdrvfeseseqeevfeei.sqlvqsaldgynvcifaygqTGsGKtyTmeg......... 102
                  ni v+ar+r +++  +a+ +++  +    + + k+ +f++d+ f s+++q+evf+ i + lvq   dgyn ci+aygqTGsGKtyTm g         
   KOO22834.1  10 NIAVYARIRSSSQPAEASSDVSvvDgqpdKVRAKDLQFNLDHAFGSDAKQAEVFNVIgAPLVQRITDGYNACIIAYGQTGSGKTYTMLGpenakldgs 107
                  799**********9666666664425566999************************9446999999**********************9998888888 PP

                  .......ST-HCHHHHHHHHHHCCTSCCCCEEEEEEEEEEESS-EEETT CS
  Microtub_bd 103 ..eeeeagmipraveeifetiselkekgwkyeielqfveiynekvqDlL 149
                    e+++ g +pra  ++f+++         y+++ +++e+yn++v+DlL
   KOO22834.1 108 ggETADLGIVPRACLQLFKMLPAG------YTVTTSYMEVYNDNVNDLL 150
                  877888899999999999998888......******************8 PP

>> IQ  IQ calmodulin-binding motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.8   0.0   5.2e-07   0.00092       2      18 ..     592     608 ..     591     610 .. 0.90

  Alignments for each domain:
  == domain 1  score: 18.8 bits;  conditional E-value: 5.2e-07
                 HHHHHHHHHHHHHHHHH CS
          IQ   2 kaaikIQaawRGylaRk 18 
                 +a ikIQa+wRG ++R 
  KOO22834.1 592 QATIKIQAVWRGKMVRD 608
                 699************95 PP

>> DUF737  Protein of unknown function (DUF737)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.6   8.3   5.2e-07   0.00094      68     169 ..     348     459 ..     185     468 .. 0.67
   2 ?   -1.9   0.1       2.1   3.7e+03     107     118 ..     521     532 ..     489     606 .. 0.53

  Alignments for each domain:
  == domain 1  score: 19.6 bits;  conditional E-value: 5.2e-07
      DUF737  68 asssssqakveeeelrkkikeelqkr......leeeqakaeavqe....elakllerEreaaqeelteailrerlst.edErlkaqllelerkarqLee 155
                  s++  ++  +  + +kk +eelq +      ++e+ a ae v+e    ++  ll  E ++ q +  +a ++ r+++ +dE     +  ler+ + Le+
  KOO22834.1 348 DSVKARSTGAAFLAAQKKLEEELQAQraalsaYQEKLASAEGVKEamkaKVDTLL-SEMQSLQRDADDAKRQRRQEAlQDETVAMSQAALERRVKALEQ 445
                 2222222222233557777777777777776666666665666662221555444.567777777777776666654277777778889********** PP

      DUF737 156 kekeLkkqdafYke 169
                 +++eL++ +++ ++
  KOO22834.1 446 RNRELEEENRLLRQ 459
                 *******9999886 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 2.1
      DUF737 107 elakllerErea 118
                 e+++ ++++r +
  KOO22834.1 521 EVRRKASAQRLS 532
                 222222222222 PP

>> DUF677  Protein of unknown function (DUF677)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   4.2   2.8e-05     0.049     217     318 ..     349     454 ..     329     468 .. 0.81

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 2.8e-05
      DUF677 217 avPleavgkwvasawkkyeealkrqkeivssmekgievakkdvenisilverleseiksilktvefAvekeenea..avklalee..ikkkveklteki 311
                 +v   ++g  +  a kk ee l+ q+ + s  ++ +  a+   e ++ +v+ l se++s+ + +++A  ++ +ea  +  +a+++  +++ v+ l +  
  KOO22834.1 349 SVKARSTGAAFLAAQKKLEEELQAQRAALSAYQEKLASAEGVKEAMKAKVDTLLSEMQSLQRDADDAKRQRRQEAlqDETVAMSQaaLERRVKALEQRN 447
                 555566676667899*****************************************************9999885336677786533788889999888 PP

      DUF677 312 eevgeea 318
                 +e++ee 
  KOO22834.1 448 RELEEEN 454
                 8888775 PP

>> TSC22  TSC-22/dip/bun family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.9   0.1      0.16   2.9e+02      17      51 ..     392     426 ..     384     432 .. 0.83
   2 ?   13.5   1.9   3.7e-05     0.066      19      43 ..     436     460 ..     434     474 .. 0.86

  Alignments for each domain:
  == domain 1  score: 1.9 bits;  conditional E-value: 0.16
       TSC22  17 evLkekIkeLeernseleeENslLkalaspeqleq 51 
                 e +k k+  L+++++ l+++    k++  +e l+ 
  KOO22834.1 392 EAMKAKVDTLLSEMQSLQRDADDAKRQRRQEALQD 426
                 7899999***********99988888888888775 PP

  == domain 2  score: 13.5 bits;  conditional E-value: 3.7e-05
       TSC22  19 LkekIkeLeernseleeENslLkal 43 
                 L  ++k Le+rn+eleeEN+lL++ 
  KOO22834.1 436 LERRVKALEQRNRELEEENRLLRQR 460
                 6678999****************84 PP

>> Atg14  Vacuolar sorting 38 and autophagy-related subunit 14
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5  11.2   6.5e-05      0.12      20     121 ..     373     467 ..     363     559 .. 0.80

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 6.5e-05
       Atg14  20 gperlyelrerlaklksekeslkkkiekalegkeeaeqledkiknkkakleelksliadlrerlqelkdklsqlkkeieekkkklaklsdklkkRrsdl 118
                 ++  l  ++e+la+    ke++k k++ +l++ +        ++++++++++++ + a++ e ++  ++ l+++ k++e++ ++l++ ++ l +R   +
  KOO22834.1 373 QRAALSAYQEKLASAEGVKEAMKAKVDTLLSEMQ-------SLQRDADDAKRQRRQEALQDETVAMSQAALERRVKALEQRNRELEEENRLLRQRDIMH 464
                 5668999***************************.......8888888888888888888888888888888888888888888888888887666654 PP

       Atg14 119 esl 121
                 +++
  KOO22834.1 465 RLI 467
                 443 PP

>> ResIII  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.4   0.0    0.0022         4      29      42 ..      84      97 ..      55     124 .. 0.78
   2 ?    3.4   0.3     0.038        68      58     129 ..     358     424 ..     328     469 .. 0.67

  Alignments for each domain:
  == domain 1  score: 7.4 bits;  conditional E-value: 0.0022
                EEESTTSTHHHHHH CS
      ResIII 29 ikmaTGtGKTlvaa 42
                    TG+GKT++++
  KOO22834.1 84 AYGQTGSGKTYTML 97
                4468********96 PP

  == domain 2  score: 3.4 bits;  conditional E-value: 0.038
                 EEEESSHHHHHHHHHHGGGGTGG....GEEEESSS-B--.......-SEEEEEHHHHHHTH.........HHH CS
      ResIII  58 lflvprkslleqtleefkkflseaykeigkkvsgdkkkakekdstnkkilvttiqsldadseee.eeeseell 129
                  fl+ +k+l e ++ + + ++  +   ++k  s ++ k  e  + + + l+++ qsl++d + + ++ ++e+l
  KOO22834.1 358 AFLAAQKKLEEELQAQRAALSA-Y---QEKLASAEGVK--EAMKAKVDTLLSEMQSLQRDADDAkRQRRQEAL 424
                 5566666665555533322222.2...22333333333..355678999**********99776522333333 PP

>> Macoilin  Macoilin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5  11.3   0.00017      0.31     375     487 ..     331     453 ..     222     475 .. 0.66

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 0.00017
    Macoilin 375 ssaalkdaaenslpnnqlskkdalv..rLeadikkLkaeLqasrqteqelrskissltseerslkselqqlkkendllqtklhelvsakqkdk.q.... 466
                 ++a++ +a+  ++  n+ s k  ++   + a  kkL  eLqa+r   +  ++k+ s  + + ++k+++++l  e ++lq   +++  +++++  q    
  KOO22834.1 331 AQARRAKAVAATVMRNEDSVKARSTgaAFLAAQKKLEEELQAQRAALSAYQEKLASAEGVKEAMKAKVDTLLSEMQSLQRDADDAKRQRRQEAlQdetv 429
                 3344444444444444444443333236667789*********************************************99999988776653222211 PP

    Macoilin 467 tlqq..lekrLke.ekearaslek 487
                 +++q  le+r+k+ e+++r   e+
  KOO22834.1 430 AMSQaaLERRVKAlEQRNRELEEE 453
                 344333788888756666655443 PP

>> TPR_MLP1_2  TPR/MLP1/MLP2-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.5  24.4    0.0044         8      16     124 ..     355     459 ..     340     460 .. 0.79

  Alignments for each domain:
  == domain 1  score: 6.5 bits;  conditional E-value: 0.0044
  TPR_MLP1_2  16 ekeeaeaklqklqedlekqaeiakeaqqkYerelvkhaedvkelqalreelnelkaeiaelkaeaesakaelees...eesweeqkeelekelselekr 111
                   ++  a+++kl+e+l++q++ +++ q+k     +  ae vke  a+++++++l +e+++l+ +a++ak +  ++    e  +  + +le++++ le+r
  KOO22834.1 355 TGAAFLAAQKKLEEELQAQRAALSAYQEK-----LASAEGVKE--AMKAKVDTLLSEMQSLQRDADDAKRQRRQEalqDETVAMSQAALERRVKALEQR 446
                 44555677888888888888888888773.....456777775..6788899999999999999999998887752227899999************** PP

  TPR_MLP1_2 112 iedlneqNklLhd 124
                   +l+e N+lL +
  KOO22834.1 447 NRELEEENRLLRQ 459
                 ***********77 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (622 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1825  (0.10179); expected 358.6 (0.02)
Passed bias filter:                      640  (0.0356964); expected 358.6 (0.02)
Passed Vit filter:                        92  (0.00513135); expected 17.9 (0.001)
Passed Fwd filter:                        19  (0.00105974); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.77u 0.32s 00:00:01.09 Elapsed: 00:00:00.51
# Mc/sec: 3655.91
//
Query:       KOO22835.1  [L=426]
Description: hypothetical protein Ctob_002169 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
       0.16   10.6  11.4       0.25   10.0  11.4    1.3  1  Hamartin    Hamartin protein


Domain annotation for each model (and alignments):
>> Hamartin  Hamartin protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0  11.4   1.4e-05      0.25     338     517 ..       8     186 ..       2     229 .. 0.48

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 1.4e-05
    Hamartin 338 ttppsspgivpttelelsssasllsskvsstpeaagkatpetTPakssrkl...ppslsesavvvalpassrksspprkdeksesskpdlskqeevene 433
                 +++p+s++  ++t+++ s s++l+ssk+ss   + +k  p++ P k+ +++    + l ++ ++    +  +++   + +        +l+++e++   
  KOO22835.1   8 AVSPTSKKKEAATPAKASTSKPLKSSKASSAVLD-AKMGPAAAPEKKKSSAedeVNVLKDRLAK---GHRLNDAELAQLELAAVARWNQLQREEDE--- 99 
                 4566666666666666666666666666666666.66666666666665433331111121111...11111111111111111111112222221... PP

    Hamartin 434 keleeslk...skssvtlseLsdvikelleaesedsvekeeeeaaisqelseiteekketlvsrggldspfsrtleslaksqr.rkrl 517
                  e++ +++   ++++   ++L + ++el++a ++d+ + e+  +a+ +el+e+   k+   v r  l+ +  ++l +l + ++ +kr 
  KOO22835.1 100 -EYQRQREleqQREQQREQRLAQELQELRKAAAADRANLERAGKAVAEELKELRVMKEAAAVDRENLEAAMAQELSELREMREqQKRE 186
                 .111111121133333333355555555555555555555555566666655555555555566666666665555555544422222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (426 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2793  (0.155781); expected 358.6 (0.02)
Passed bias filter:                      756  (0.0421663); expected 358.6 (0.02)
Passed Vit filter:                       103  (0.00574488); expected 17.9 (0.001)
Passed Fwd filter:                        15  (0.000836633); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.77u 0.36s 00:00:01.12 Elapsed: 00:00:00.50
# Mc/sec: 2558.25
//
Query:       KOO22836.1  [L=170]
Description: para-hydroxybenzoate-polyprenyl transferase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.2e-17   63.2   1.8    2.2e-10   40.3   0.1    3.0  3  UbiA      UbiA prenyltransferase family


Domain annotation for each model (and alignments):
>> UbiA  UbiA prenyltransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.3   0.1   1.2e-14   2.2e-10      32      64 ..       1      33 [.       1      35 [. 0.96
   2 !   20.2   0.4   1.7e-08    0.0003     153     193 ..      36      75 ..      32      97 .. 0.76
   3 !    4.4   0.0    0.0011        20     211     246 ..      71     106 ..      69     117 .. 0.83

  Alignments for each domain:
  == domain 1  score: 40.3 bits;  conditional E-value: 1.2e-14
        UbiA 32 aaaaanalNdyfDreiDadmertpnRPlvsGri 64
                +++a++++Nd++Dr+iD+++ert+ RPl+sG++
  KOO22836.1  1 MRGAGCTVNDLWDRDIDRQVERTRTRPLASGAL 33
                79*****************************86 PP

  == domain 2  score: 20.2 bits;  conditional E-value: 1.7e-08
        UbiA 153 flltwaialandlrdregDrkagiktlpvvlGrkaarilla 193
                 f +t+ ++++++++d+++D+k+gi ++++ lG++a +   a
  KOO22836.1  36 FWWTLLYDTIYAHQDKHDDAKIGIGSTALGLGDAAGLHP-A 75 
                 67999999999**********************999973.2 PP

  == domain 3  score: 4.4 bits;  conditional E-value: 0.0011
        UbiA 211 llllylllalllaalallraarlvrrrdakkaakff 246
                  l ++++++++ +a+++ +++  v+  +++++ ++f
  KOO22836.1  71 GLHPAFYVGIAGGAAHMGWQVATVDLGSREDCLRKF 106
                 567899999999999999999999999999999988 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (170 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       221  (0.0123264); expected 358.6 (0.02)
Passed bias filter:                      182  (0.0101512); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.27s 00:00:00.66 Elapsed: 00:00:00.43
# Mc/sec: 1176.46
//
Query:       KOO22837.1  [L=262]
Description: rhodopsin [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    4.7e-25   88.5   8.1    5.9e-25   88.2   8.1    1.1  1  Bac_rhodopsin  Bacteriorhodopsin-like protein


Domain annotation for each model (and alignments):
>> Bac_rhodopsin  Bacteriorhodopsin-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   88.2   8.1   3.3e-29   5.9e-25       6     220 ..      19     253 ..      15     256 .. 0.84

  Alignments for each domain:
  == domain 1  score: 88.2 bits;  conditional E-value: 3.3e-29
                    HHHHHHHHHHHHHHHHTTTSSTCCHHHHHHHHHHHHHHHHHHHHHHHTTTTEEEEEETTEE.........EEEE..THHHHHHHHHHHHHHHHHHH CS
  Bac_rhodopsin   6 vfallalvatllfvvtsrrvkdgekrkllvipllitaiaavaYltmalglGltgveaefeh.........rqvf..yarYidWllttPllvlvlae 90 
                     +++ ++++t++f+++   v +++ +++++i+ l+t+iaa++Y+ +   +  +    e+            q+f   +rY+dW+lt+Pll+  ++ 
     KOO22837.1  19 FTLASMMASTIFFWIRMGSV-SEKYKSAMTITGLVTFIAAYHYIRIFNSWNESYHYPEAADgvvqdpvitGQPFndAYRYMDWMLTVPLLMIEIIF 113
                    56677888999999877775.7777***********************999999777777799**999997887889************8888888 PP

                    HTTSS....HHHHHHHHHHHHHHHHHHHHHHHT...SHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTSTHHH.HHHHHHHHHHHHHHHHHHHHH CS
  Bac_rhodopsin  91 lagad....rrtllvlvladvvmivgglvgali...estyrwvyftisvaallvvlylllgelaraakslsser.rslfntLrnlvvvlwilYpva 178
                    + g +    + + + l +a  +miv g+ g+li   +  +rw+++t +++ +l+v+  ll  l+ a+k+ ++e  ++  n+    +vv w  Yp++
     KOO22837.1 114 VMGLSpeetAAKATSLGVAAGLMIVLGYPGELIiegDLNVRWMWWTLAMIPFLYVVHTLLIGLQGAIKEEKNEEvAKKLNMVCWATVVSWCTYPIV 209
                    888885555666677778999************9766667******************************9994344444445568999******* PP

                    HHHSTTTTSS..CHHHHHHHHHHHHHHHHHHHHHHHHCCHTTCH CS
  Bac_rhodopsin 179 wllgeeGngi..qpdveavvygilDlvtkvgfglillaaatslg 220
                    +++   G      +   +++y + D++ k g+g+++ ++ ++ +
     KOO22837.1 210 YVFPMLGLDGpsAVVAIQLGYCVSDIISKCGVGFLIYNITIAKS 253
                    *****99877433334578999**************99988765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (262 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       829  (0.0462379); expected 358.6 (0.02)
Passed bias filter:                      467  (0.0260472); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.25s 00:00:00.72 Elapsed: 00:00:00.42
# Mc/sec: 1892.72
//
Query:       KOO22838.1  [L=134]
Description: hypothetical protein Ctob_004465 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (134 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       360  (0.0200792); expected 358.6 (0.02)
Passed bias filter:                      280  (0.0156172); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.24s 00:00:00.62 Elapsed: 00:00:00.42
# Mc/sec: 966.76
//
Query:       KOO22839.1  [L=540]
Description: hypothetical protein Ctob_004466 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
   4.2e-154  513.8   4.5   4.7e-154  513.6   4.5    1.0  1  Cpn60_TCP1  TCP-1/cpn60 chaperonin family


Domain annotation for each model (and alignments):
>> Cpn60_TCP1  TCP-1/cpn60 chaperonin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  513.6   4.5  2.6e-158  4.7e-154       2     488 ..      41     535 ..      40     538 .. 0.98

  Alignments for each domain:
  == domain 1  score: 513.6 bits;  conditional E-value: 2.6e-158
                 HHHHHCCSSTTXXEEEEEETTSEEEEEXSHHHHHHCSXXXSHHHHHHHHHHHHCCCCCTTCHHHHHHHHHHHHHHHHHHHHCTXXHHHHHHHHHHHHHH CS
  Cpn60_TCP1   2 adivkttlGPkGmdKmlvnkggkvvvTnDGatilkeleiehPaakllveaaesqdeevGDGTttvviLageLleeaekliaagvhpttiiegyekalek 100
                  +i++t+lGPkGmdKml+++ g+v++TnDGatil+++ +e+ + kllve+++sqd+e+GDGTt vv+Lag+Ll++ae l+++g+hp +i egy++a++ 
  KOO22839.1  41 CNILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMRVENQIGKLLVELSKSQDDEIGDGTTGVVVLAGALLDKAEALLDRGIHPMRIAEGYDRACAI 139
                 689************************************************************************************************ PP

                 HHHHHHHHXEEBXSCST....T.HHHHHHHHHHCTTSSXXSTHHHHHHHHHHHHHCHCCCS.EECSCCCEECCCCEECECTTSEEESEEEESS--SSTT CS
  Cpn60_TCP1 101 aleaLkeiaveisseek....dreeLlkvartslsskltskeaeelsklvvdAvklieene.keldlgrikvvkieggsledselveGlvldkgvlspd 194
                 a+e+L +i+ e+++++     +re+L++va t+l+sk++++  +++++++vdAv+++ ++e ++++l+ ik+ ++ gg+led++lv+G+v+dk++++p+
  KOO22839.1 140 AVEHLASISDEFDNRTTdgalNRERLIEVAMTTLGSKIINRAHRQMAEICVDAVLAVADHErGDVNLDLIKMDSKVGGKLEDTRLVRGIVVDKDMSHPQ 238
                 *********9999984345669********************************77777777************************************* PP

                 SSCEEECEEEEEESS-BS--HHCCHHHCCCCSCCHHHHHHHHHHHHHHHHHHHHHHTTECEEEESS-B-HHHHHHHHHCT-EEE-S--HHHHHHHHHHH CS
  Cpn60_TCP1 195 mpkklenakvllldvsLeiektetkttvvlsdaeeleklekaeekqleellekiiksgvnvvvcqkgiddlalhflakngilalrrvkkkdlerlakat 293
                 mpk+l+++k+++l++++e++k++tk++++l++++ +e+++ ae++++++++ k+++sg+++v+cq+g+dd+a+h+l++n++ a+r+v   +le +a+a+
  KOO22839.1 239 MPKELKDVKLCVLTCPFEPPKPKTKHKLELETVQAYEDMQAAEKQYFLDMIAKVKASGATLVICQWGFDDEANHLLMQNDLPAVRWVGGVELELIAIAC 337
                 *************************************************************************************************** PP

                 T--EBSCGGGGGCGC-EEEEEEEECCETT..CCEEEEECESSSSXEEEEEEESTCCCHHHHHHHHHHHHHHHHHHHHHHEEEETTTCHHHHHHHHHHCC CS
  Cpn60_TCP1 294 GatavssledltpeelGtakkveeekigs..ekttiieevksgkiatillrgatdtvldeieraiedAlnvvknaiedekvvpGGGatelelakklkey 390
                 +a++v ++ +ltpe+lGt+++v+ee++g+  ++++iie+++++k++t+ +rg + +++de+ r+++dA++vv+n+++ +k+v+GGGa+el+++ k+ e+
  KOO22839.1 338 NARIVPRFVELTPEKLGTCGRVHEESFGTtkDRMIIIEDCPNSKAVTVFVRGGNRMIIDEAIRSLHDAICVVRNLVRTNKIVYGGGAAELACSLKVFEE 436
                 ***************************976589****************************************************************** PP

                 CCTSXCCHHHHHHHHHHHHTHHHHHHHHHCTSXHHHHHHHHHHHH.HTTXTTEEEETTTTCEEECCCCTXEEEHHHHHHHHHHHHHHHHHHHCEEEEEX CS
  Cpn60_TCP1 391 aksvsgeeqlaieafakALevipktLaeNaGldpievlaklraah.nkgekelgidvesgeiidlveagvvDplkvkrqalksAteaastiLrideiik 488
                 +++v + eq+a++af++ALe  p +LaeN+Gl+pi+ +a ++a++ ++g+  lgid+ s+ ++d++e++v++ l  k+q + +At+++++iL+id++i 
  KOO22839.1 437 SDKVGTIEQYAMRAFSEALEMTPCALAENSGLNPIAEVAGVKAMQvKEGKPYLGIDCMSKGTRDMKEQKVFETLIGKQQQMLLATQVVRMILKIDDVIA 535
                 *******************************************886889999*********************************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (540 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       563  (0.0314016); expected 358.6 (0.02)
Passed bias filter:                      486  (0.0271069); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.57u 0.29s 00:00:00.85 Elapsed: 00:00:00.51
# Mc/sec: 3195.72
//
Query:       KOO22840.1  [L=571]
Description: Ankyrin-like protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    7.9e-20   70.8   0.0    1.3e-19   70.0   0.0    1.4  1  DnaJ      DnaJ domain
    2.8e-17   63.1  14.2    3.3e-09   37.2   2.3    3.4  4  Ank_2     Ankyrin repeats (3 copies)
      2e-11   44.2   5.5    3.9e-08   33.7   0.5    4.4  4  Ank_4     Ankyrin repeats (many copies)
      7e-08   32.6  10.7      0.012   16.0   1.5    5.5  6  Ank_5     Ankyrin repeats (many copies)
    1.2e-06   28.4   3.6         12    6.8   0.1    5.7  6  Ank_3     Ankyrin repeat
    2.1e-06   27.9  13.0       0.18   12.3   0.2    5.6  5  Ank       Ankyrin repeat


Domain annotation for each model (and alignments):
>> DnaJ  DnaJ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.0   0.0   4.5e-23   1.3e-19       2      63 .]       4      61 ..       3      61 .. 0.96

  Alignments for each domain:
  == domain 1  score: 70.0 bits;  conditional E-value: 4.5e-23
                HHHHHTSSTTG-HHHHHHHHHHHHHHHSTTTSCCHHHHHHHHHHHHHHHHHHTSHHHHHHHH CS
        DnaJ  2 yYeiLgvskdasedeIkkaYrklalkyHPDknpkdpeaeekFkeineAyevLsdpekRkqYD 63
                +Ye+Lgv++das + I kaYrklalk+HPDk      ++ +F+ ++eAy vLsd+ekR+ +D
  KOO22840.1  4 PYEVLGVPTDASPEAISKAYRKLALKHHPDKG----GSAAEFRVVAEAYAVLSDAEKRRVFD 61
                7*******************************....77789******************999 PP

>> Ank_2  Ankyrin repeats (3 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.6   0.1   0.00022      0.67      19      78 ..     351     419 ..     333     421 .. 0.69
   2 !   16.5   0.3   3.3e-06    0.0098      11      72 ..     375     441 ..     359     449 .. 0.80
   3 !   33.2   0.4     2e-11   6.1e-08       1      83 []     425     517 ..     425     517 .. 0.81
   4 !   37.2   2.3   1.1e-12   3.3e-09       1      79 [.     458     546 ..     458     550 .. 0.85

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00022
       Ank_2  19 gadpnkngktaLhyAakngnlei......vklLleh...ad...ndgrtpLhyAarsghleivklLlekgad 78 
                 g+ ++   +taLh++  + + ++      + +L+ +    +    +g++ L +A++ g+  ++  Ll+ ga 
  KOO22840.1 351 GSGLE---QTALHWSSTKADAKMtrdvpcIMALVHAradSNartTKGNSSLALACKRGQWAAATALLDAGAR 419
                 44444...999998888754443333232777774364522445779999****999999999999988875 PP

  == domain 2  score: 16.5 bits;  conditional E-value: 3.3e-06
       Ank_2  11 elvklLl.egadpn..k.ngktaLhyAakngnleivklLleh.adndgrtpLhyAarsg.hleivklL 72 
                 +++  L+ + ad n  + +g++ L +A+k+g+  ++ +Ll++ a+ dg  +L+ A r+g + e+++ L
  KOO22840.1 375 PCIMALVhARADSNarTtKGNSSLALACKRGQWAAATALLDAgARADGV-ALMQALRHGaSDELLRGL 441
                 5888888777787765379************9999******99888898.*******98234555555 PP

  == domain 3  score: 33.2 bits;  conditional E-value: 2e-11
       Ank_2   1 LhlAakngnl.elvklLlegadpn...k..ngktaLhyAakngnleivklLle.h.....adndgrtpLhyAarsghleivklLlekgadinlkd 83 
                 L++A ++g++ el++ L  gad +   +  + ++aL+ A+++ +   v+ Ll+ h     ad +g  +Lhy+a +g ++++ lLl  ga+++++d
  KOO22840.1 425 LMQALRHGASdELLRGLC-GAD-GllaDgpEARSALMRAVMGADSTSVERLLKlHadvslADANGARALHYCADQGDTKCALLLLGAGAEVDATD 517
                 899999993325555554.666.345425688*********998888*****965677777799*********************88****9987 PP

  == domain 4  score: 37.2 bits;  conditional E-value: 1.1e-12
       Ank_2   1 LhlAakngnlelvklLl.egadpn..k.ngktaLhyAakngnleivklLleh......adndgrtpLhyAarsghleivklLlekgadi 79 
                 L+ A++  ++  v+ Ll  +ad++  + ng  aLhy+a +g+++++ lLl +      +d +g+t+Lh+A r gh  +   Lle +ad 
  KOO22840.1 458 LMRAVMGADSTSVERLLkLHADVSlaDaNGARALHYCADQGDTKCALLLLGAgaevdaTDAHGNTALHAAGRRGHKALWATLLEANADA 546
                 899***86677999999777888886479****************99999755566666699*************88888999988886 PP

>> Ank_4  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.5   0.1    0.0022       6.5      13      55 .]     373     414 ..     355     414 .. 0.89
   2 !   17.3   0.2   1.8e-06    0.0053       2      55 .]     455     507 ..     454     507 .. 0.93
   3 !   33.7   0.5   1.3e-11   3.9e-08       3      49 ..     489     534 ..     487     540 .. 0.94
   4 ?    3.2   0.0     0.048   1.4e+02      12      38 ..     531     556 ..     531     562 .. 0.89

  Alignments for each domain:
  == domain 1  score: 7.5 bits;  conditional E-value: 0.0022
       Ank_4  13 rlelvrlLlekgadinaqdnrsGetalhiAakrgnveilklLl 55 
                 ++++++ L+  +ad na+    G++ l  A+krg+  ++  Ll
  KOO22840.1 373 DVPCIMALVHARADSNAR-TTKGNSSLALACKRGQWAAATALL 414
                 67899****99*******.777************988887776 PP

  == domain 2  score: 17.3 bits;  conditional E-value: 1.8e-06
       Ank_4   2 ltaLhyaaisgrlelvrlLlekgadinaqdnrsGetalhiAakrgnveilklLl 55 
                 ++aL +a++  +  +v++Ll   ad+    +++G  alh++a  g+ +++ lLl
  KOO22840.1 455 RSALMRAVMGADSTSVERLLKLHADVSLA-DANGARALHYCADQGDTKCALLLL 507
                 688999999999999*****99******7.********************9997 PP

  == domain 3  score: 33.7 bits;  conditional E-value: 1.3e-11
       Ank_4   3 taLhyaaisgrlelvrlLlekgadinaqdnrsGetalhiAakrgnve 49 
                 +aLhy+a +g+++++ lLl  ga+++a+ ++ G+talh A +rg++ 
  KOO22840.1 489 RALHYCADQGDTKCALLLLGAGAEVDAT-DAHGNTALHAAGRRGHKA 534
                 68**************************.***************975 PP

  == domain 4  score: 3.2 bits;  conditional E-value: 0.048
       Ank_4  12 grlelvrlLlekgadinaqdnrsGeta 38 
                 g+  l + Lle +ad  a  n++G+t+
  KOO22840.1 531 GHKALWATLLEANADAGAL-NSRGRTP 556
                 5777899***********9.******7 PP

>> Ank_5  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.0      0.75   2.2e+03      16      26 ..     355     365 ..     328     372 .. 0.64
   2 !   10.7   0.1   0.00017       0.5       1      38 [.     380     416 ..     380     423 .. 0.85
   3 ?    1.3   0.0      0.16   4.7e+02      18      33 ..     423     438 ..     413     448 .. 0.78
   4 !    7.6   0.1    0.0016       4.8      17      55 ..     455     493 ..     442     494 .. 0.87
   5 !   16.0   1.5   3.9e-06     0.012       6      54 ..     477     525 ..     473     527 .. 0.89
   6 !   14.4   1.0   1.2e-05     0.035       5      52 ..     508     556 ..     504     556 .. 0.93

  Alignments for each domain:
  == domain 1  score: -0.9 bits;  conditional E-value: 0.75
       Ank_5  16 gntpLhvAaky 26 
                  +t+Lh+++ +
  KOO22840.1 355 EQTALHWSSTK 365
                 23888887765 PP

  == domain 2  score: 10.7 bits;  conditional E-value: 0.00017
       Ank_5   1 LlehgpadvnrldgggntpLhvAakygaadvvrlLlar 38 
                 L++++ ad n++  +gn+ L +A+k+g +  +  Ll+ 
  KOO22840.1 380 LVHAR-ADSNARTTKGNSSLALACKRGQWAAATALLDA 416
                 56777.999*********************99999933 PP

  == domain 3  score: 1.3 bits;  conditional E-value: 0.16
       Ank_5  18 tpLhvAakygaadvvr 33 
                  +L++A ++ga+d ++
  KOO22840.1 423 VALMQALRHGASDELL 438
                 69*********99865 PP

  == domain 4  score: 7.6 bits;  conditional E-value: 0.0016
       Ank_5  17 ntpLhvAakygaadvvrlLlargadlnltdsrGltaldl 55 
                  ++L+ A+ +  ++ v++Ll+ +ad  l d++G  al++
  KOO22840.1 455 RSALMRAVMGADSTSVERLLKLHADVSLADANGARALHY 493
                 489****************************99777766 PP

  == domain 5  score: 16.0 bits;  conditional E-value: 3.9e-06
       Ank_5   6 padvnrldgggntpLhvAakygaadvvrlLlargadlnltdsrGltald 54 
                 +adv   d +g  +Lh+ a +g   +++lLl  ga  ++td++G+tal+
  KOO22840.1 477 HADVSLADANGARALHYCADQGDTKCALLLLGAGAEVDATDAHGNTALH 525
                 377777788899***********************************97 PP

  == domain 6  score: 14.4 bits;  conditional E-value: 1.2e-05
       Ank_5   5 g.padvnrldgggntpLhvAakygaadvvrlLlargadlnltdsrGlta 52 
                 g  a v+++d +gnt+Lh A ++g+  +   Ll+ +ad+++ +srG+t+
  KOO22840.1 508 GaGAEVDATDAHGNTALHAAGRRGHKALWATLLEANADAGALNSRGRTP 556
                 55599*******************************************8 PP

>> Ank_3  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.0       3.5     1e+04       3       9 ..     356     362 ..     355     373 .. 0.79
   2 ?    4.2   0.0      0.03        88       2      27 ..     394     418 ..     393     422 .. 0.88
   3 ?   -0.6   0.0       1.1   3.2e+03       5      17 ..     424     437 ..     424     445 .. 0.78
   4 !    6.2   0.0    0.0067        20       3      30 ..     455     481 ..     453     482 .. 0.92
   5 !    6.8   0.1     0.004        12       1      30 [.     486     514 ..     486     515 .. 0.81
   6 !    6.6   0.1     0.005        15       1      29 [.     519     546 ..     519     548 .. 0.90

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 3.5
       Ank_3   3 etpLhlA 9  
                 +t+Lh+ 
  KOO22840.1 356 QTALHWS 362
                 79***96 PP

  == domain 2  score: 4.2 bits;  conditional E-value: 0.03
       Ank_3   2 GetpLhlAarsgnleivkfLlenkga 27 
                 G++ L lA++ g  + + +Ll+  ga
  KOO22840.1 394 GNSSLALACKRGQWAAATALLD-AGA 418
                 99************99999999.666 PP

  == domain 3  score: -0.6 bits;  conditional E-value: 1.1
       Ank_3   5 pLhlAarsgnle.i 17 
                 +L++A+r+g  + +
  KOO22840.1 424 ALMQALRHGASDeL 437
                 69******988645 PP

  == domain 4  score: 6.2 bits;  conditional E-value: 0.0067
       Ank_3   3 etpLhlAarsgnleivkfLlenkgadvn 30 
                 +++L++A++ ++ + v+ Ll+  +adv 
  KOO22840.1 455 RSALMRAVMGADSTSVERLLK-LHADVS 481
                 79***********99******.999985 PP

  == domain 5  score: 6.8 bits;  conditional E-value: 0.004
       Ank_3   1 nGetpLhlAarsgnleivkfLlenkgadvn 30 
                 nG  +Lh++a +g+++ + +Ll   ga+v+
  KOO22840.1 486 NGARALHYCADQGDTKCALLLLG-AGAEVD 514
                 68889***********6666666.899887 PP

  == domain 6  score: 6.6 bits;  conditional E-value: 0.005
       Ank_3   1 nGetpLhlAarsgnleivkfLlenkgadv 29 
                 +G+t+Lh A r g+ ++   Lle  +ad 
  KOO22840.1 519 HGNTALHAAGRRGHKALWATLLE-ANADA 546
                 79********************9.78875 PP

>> Ank  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.7   0.0    0.0017       5.1       3      31 ..     356     391 ..     355     392 .. 0.80
   2 ?    0.7   0.1      0.27   8.2e+02       2      25 ..     394     418 ..     393     434 .. 0.82
   3 ?    2.3   0.0     0.086   2.6e+02       4      29 ..     456     482 ..     455     485 .. 0.72
   4 !   12.3   0.2   6.1e-05      0.18       5      31 ..     490     517 ..     486     518 .. 0.89
   5 !    9.2   0.3   0.00059       1.8       1      26 [.     519     545 ..     519     553 .. 0.74

  Alignments for each domain:
  == domain 1  score: 7.7 bits;  conditional E-value: 0.0017
                 BBHHHHHHHHTT......HHHHHHHHT.TTSTTCBT CS
         Ank   3 nTPLHlAatngk......kriiklLLh.GAnlnald 31 
                  T+LH+ +t ++      + +i +L+h +A+ na++
  KOO22840.1 356 QTALHWSSTKADakmtrdVPCIMALVHaRADSNART 391
                 6*****997666666666889999**758**99997 PP

  == domain 2  score: 0.7 bits;  conditional E-value: 0.27
                 SBBHHHHHHHHTTHHHHHHHH.TTT CS
         Ank   2 GnTPLHlAatngkkriiklLL.hGA 25 
                 Gn+ L lA+ +g++  + +LL  GA
  KOO22840.1 394 GNSSLALACKRGQWAAATALLdAGA 418
                 7888999**9999999999995574 PP

  == domain 3  score: 2.3 bits;  conditional E-value: 0.086
                 BHHHHHHHHTTHHHHHHHH.TTTSTTC CS
         Ank   4 TPLHlAatngkkriiklLL.hGAnlna 29 
                 ++L++A+++++   ++ LL   A++ +
  KOO22840.1 456 SALMRAVMGADSTSVERLLkLHADVSL 482
                 79*****88887777777742578765 PP

  == domain 4  score: 12.3 bits;  conditional E-value: 6.1e-05
                 HHHHHHHHTTHHHHHHHH.TTTSTTCBT CS
         Ank   5 PLHlAatngkkriiklLL.hGAnlnald 31 
                 +LH++a  g++ ++ lLL  GA+++a+d
  KOO22840.1 490 ALHYCADQGDTKCALLLLgAGAEVDATD 517
                 8***99999999***9**889*****99 PP

  == domain 5  score: 9.2 bits;  conditional E-value: 0.00059
                 TSBBHHHHHHHHTTHHHHHHHH.TTTS CS
         Ank   1 dGnTPLHlAatngkkriiklLL.hGAn 26 
                 +GnT+LH A ++g+k     LL   A+
  KOO22840.1 519 HGNTALHAAGRRGHKALWATLLeANAD 545
                 6******95599999998889954454 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (571 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       469  (0.0261587); expected 358.6 (0.02)
Passed bias filter:                      337  (0.0187964); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.56u 0.23s 00:00:00.79 Elapsed: 00:00:00.41
# Mc/sec: 4212.73
//
Query:       KOO22841.1  [L=474]
Description: ATP-dependent RNA [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    9.2e-13   48.5   0.0    1.8e-12   47.6   0.0    1.4  1  Helicase_C  Helicase conserved C-terminal domain
    0.00029   20.6   0.0    0.00048   19.9   0.0    1.3  1  DEAD        DEAD/DEAH box helicase


Domain annotation for each model (and alignments):
>> Helicase_C  Helicase conserved C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.6   0.0     2e-16   1.8e-12      17     110 ..     227     339 ..     223     340 .. 0.92

  Alignments for each domain:
  == domain 1  score: 47.6 bits;  conditional E-value: 2e-16
                 SEEEEEESSHHHHHH.HHHHHHHT....TSTEEEESTTSTHHHHHHHHHHHHTTSSSEEEESGGGTSSSTSTTESEEEESSSSSSH............. CS
  Helicase_C  17 gkilifvntidrlek.vklllekk....gikvavlhgelpqnereeileqfnkgesdvLiatdvaerGidipkvnlVinfdlprnv............. 97 
                 g +lifv   +++e+ ++     +    +++++++h++   +e++e+++    g ++++ at++ae ++++p+v++++++++ ++v             
  KOO22841.1 227 GAVLIFVAGLSDIEElAES----FnglpAYRFVPIHSDFAFEEQIEAFAPAPPGITKIIAATNAAESSVTLPDVDVIVDLGVAKTVsydatrnasvlsr 321
                 579********99755555....334559******************************************************99888999999***** PP

                 .....HHHHHHHTTSSST CS
  Helicase_C  98 .....tsyiqriGRtgRa 110
                      +s+ qr+GRtgR+
  KOO22841.1 322 twlakASATQRAGRTGRV 339
                 *****************7 PP

>> DEAD  DEAD/DEAH box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.9   0.0   5.4e-08   0.00048      98     172 ..      56     124 ..      26     128 .. 0.83

  Alignments for each domain:
  == domain 1  score: 19.9 bits;  conditional E-value: 5.4e-08
                 CSEEEEEHHHHHHHHHCTSSHCTTEEEEEEETHHHHHHTTTHHHHHHHHHHSHHHCTTSTTTSEEEEEESSBSHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD  98 vdivvgtpgrlddllstgklnlsqvrflVlDEadrlldqgfsdfinrilnqlpqitcdgklqrqvivlSATlpkd 172
                 +++++ t+g l+++ s +   +++v+ l+lDE+++ + +   d +  +++ql +   +     +v+++SAT++++
  KOO22841.1  56 TRLFYVTTGYLARMASHHPEAFERVSHLILDECHERSIE--ADVLCVMARQLLRRFRTL----RVVLMSATVHTE 124
                 788999*******99877778**************9998..899999999995555544....4********954 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (474 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       350  (0.0195214); expected 358.6 (0.02)
Passed bias filter:                      301  (0.0167884); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.53u 0.24s 00:00:00.77 Elapsed: 00:00:00.43
# Mc/sec: 3292.85
//
Query:       KOO22842.1  [L=176]
Description: flagellar associated protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (176 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       164  (0.00914719); expected 358.6 (0.02)
Passed bias filter:                      141  (0.00786435); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.22s 00:00:00.60 Elapsed: 00:00:00.38
# Mc/sec: 1404.07
//
Query:       KOO22843.1  [L=95]
Description: cyclin dependent kinase regulatory subunit [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.4e-36  124.6   0.1    1.6e-36  124.4   0.1    1.1  1  CKS       Cyclin-dependent kinase regulatory subunit


Domain annotation for each model (and alignments):
>> CKS  Cyclin-dependent kinase regulatory subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  124.4   0.1   8.9e-41   1.6e-36       1      67 [.       6      72 ..       6      73 .. 0.99

  Alignments for each domain:
  == domain 1  score: 124.4 bits;  conditional E-value: 8.9e-41
         CKS  1 ieYSdkyeddeyeYRhViLpkellkkipksrlLsekewraLgIqqskgWehyeihkpephiLlfrrp 67
                ieYS+ky+dd +eYRhViLpk++ k +pk+rlLse+ewr+Lg+qqs+gW+hy ih+pephiLlfrrp
  KOO22843.1  6 IEYSEKYFDDDFEYRHVILPKHVSKGAPKGRLLSESEWRGLGVQQSRGWVHYAIHRPEPHILLFRRP 72
                89****************************************************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (95 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       241  (0.0134419); expected 358.6 (0.02)
Passed bias filter:                      222  (0.0123822); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.34u 0.21s 00:00:00.55 Elapsed: 00:00:00.36
# Mc/sec: 789.47
//
Query:       KOO22844.1  [L=614]
Description: hypothetical protein Ctob_004472 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.2e-20   72.5  55.0    3.2e-20   72.5  55.0    2.2  2  UPF0564        Uncharacterised protein family UPF0564


Domain annotation for each model (and alignments):
>> UPF0564  Uncharacterised protein family UPF0564
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.7   0.1     0.012   2.2e+02     272     324 ..      35      91 ..      11     104 .. 0.63
   2 !   72.5  55.0   1.8e-24   3.2e-20       2     353 ..     170     552 ..     169     563 .. 0.75

  Alignments for each domain:
  == domain 1  score: 0.7 bits;  conditional E-value: 0.012
     UPF0564 272 ikpkeqPkk...gstkaeqslikkrrkerkekeekeqqek.keeeerkkkkkelask 324
                 + p ++P        +a +s+++++  +r+ +e++   e  +e  +r  +++++a +
  KOO22844.1  35 SMPMNRPGGarrEMAQAAASRAEAVAASRYAREAQARREAaEEAAQRTREAQARAAQ 91 
                 444444433555666777777777777777777665544414445666666666554 PP

  == domain 2  score: 72.5 bits;  conditional E-value: 1.8e-24
     UPF0564   2 kiTvPkPfsfekReeekkksirqkkleeelneaqkkeekeikkrfkAkpiPatvkiplyneimeeneeRReevreeskailletekPFsFyerdkqkke 100
                 +iTvP Pfsfe R ++  +     k+ +el e +k   +e +k+ kA+p+Pat    ly + m+  ee+ +e r+ ++       +PFsF  r ++k  
  KOO22844.1 170 RITVPTPFSFEHRPKHDAAA--LRKMRNELAEERK-ALEEARKENKARPVPATNEPGLYMKQMQMLEEKSRERRQVRRTV----PQPFSFQSRSERKAS 261
                 7*************999993..2333444444444.578999**********98777************99988866544....57*******999998 PP

     UPF0564 101 elkqksletvn.........eeerekkkFkAkpvPkslkvkllkqkeqeqeekrkkrvekrkeellkssklpprmakaeekkkekkkkk.eeqkkskek 189
                        ++           e    +  ++A++vP s+++++ ++ ++ +e++r ++ ++ +  ll++sklpprm+ ++e ++++k  + e  +++  k
  KOO22844.1 262 PTEGHADDAYGemlfkaaeaEDVGTRRPYRAREVPRSMSEPRWEM-MRIRESERREKCAQDALRLLAKSKLPPRMQLHKETERARKAAEaERIQAELDK 359
                 8887666666577888764444446788**************985.67899999999*************************99965541444566677 PP

     UPF0564 190 ektfepkrakeiP.....dfeklhetFqkelakkkkkiepteqkpfnfqeskksasreyldsenesikeekekptekkldekarl.........aeikp 274
                 e t  p +  e P     +f+++h + + + a+k+ + +pt++ pf    ++ +  r+ + +    ++++  +  +  +  ++r+          +++p
  KOO22844.1 360 ELTLTPRITDEPPegydaYFKRKHLEDERRQARKRSSYQPTVPAPFRMDMAPIKERRDEKRKMKRYMEQQDMRRDAL-MMPEQRWpylatqapvGRSNP 457
                 7888888888887555557********************************99999998888887775555555555.445558888877555544455 PP

     UPF0564 275 keqPkk........gstkaeqslikkrrkerkekeekeqqekkeeeerkkkkkelaskvkqkfaa.....qdsakklqe...erekkllkerqea 353
                  + P           +tk + ++ +k+++e+ e ++ke+++kkeee r++++k+   +v+++ ++      d +k++ e   e++ ++ ++  e+
  KOO22844.1 458 PDFPALhqkaalisETTKLFIARKEKLEQELAEAKKKEEAKKKEEEMRQQQQKAATAEVAKRLEEitgssRDRKKQFAEkeaEMKRQIRENNLEQ 552
                 55554488888888888889999999999999999999999999999999998888888888754211113444444331112333333333344 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (614 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      3145  (0.175414); expected 358.6 (0.02)
Passed bias filter:                      720  (0.0401584); expected 358.6 (0.02)
Passed Vit filter:                       142  (0.00792013); expected 17.9 (0.001)
Passed Fwd filter:                        45  (0.0025099); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 1.20u 0.36s 00:00:01.56 Elapsed: 00:00:00.54
# Mc/sec: 3433.22
//
Query:       KOO22845.1  [L=396]
Description: hypothetical protein Ctob_004471 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      3e-09   37.5   7.3    0.00015   22.4   0.9    3.3  3  HYLS1_C   Hydrolethalus syndrome protein 1 C-terminus


Domain annotation for each model (and alignments):
>> HYLS1_C  Hydrolethalus syndrome protein 1 C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.6   0.1         1   1.8e+04      35      55 ..     174     192 ..     164     199 .. 0.54
   2 !   22.4   0.9   8.4e-09   0.00015      60      89 ..     320     349 ..     271     350 .. 0.74
   3 !   17.2   0.1   3.6e-07    0.0065      59      90 .]     361     393 ..     355     393 .. 0.85

  Alignments for each domain:
  == domain 1  score: -3.6 bits;  conditional E-value: 1
     HYLS1_C  35 pgekkrkelrweireqllqke 55 
                 pg  +++ lr +   +++ +e
  KOO22845.1 174 PGAARKSMLRSA--SAMAARE 192
                 555555555554..3444443 PP

  == domain 2  score: 22.4 bits;  conditional E-value: 8.4e-09
     HYLS1_C  60 kpqrvyvpndYvVPTeKKRsaLrWevrtdl 89 
                        pn YvVPT+K+R  L W+ r+ +
  KOO22845.1 320 LSSSRRLPNAYVVPTSKRRDDLVWATRQMM 349
                 4555678******************99876 PP

  == domain 3  score: 17.2 bits;  conditional E-value: 3.6e-07
     HYLS1_C  59 skpqrvyv.pndYvVPTeKKRsaLrWevrtdla 90 
                  +p+ + + pn Yv  Te +R +LrW+ r+++a
  KOO22845.1 361 RQPRSKTMhPNRYVPCTENRRDELRWAQRAQMA 393
                 567666666********************9996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (396 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       521  (0.0290591); expected 358.6 (0.02)
Passed bias filter:                      282  (0.0157287); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.23s 00:00:00.71 Elapsed: 00:00:00.41
# Mc/sec: 2922.40
//
Query:       KOO22846.1  [L=284]
Description: abhydrolase domain-containing protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    9.9e-08   31.5   0.2    0.00014   21.2   0.0    2.2  2  Hydrolase_4    Serine aminopeptidase, S33
    3.1e-05   23.8   0.2     0.0091   15.7   0.1    2.2  2  Abhydrolase_1  alpha/beta hydrolase fold
    0.00077   20.1   0.6      0.001   19.7   0.6    1.2  1  Abhydrolase_6  Alpha/beta hydrolase family
     0.0084   15.1   0.0      0.011   14.7   0.0    1.1  1  DUF818         Chlamydia CHLPS protein (DUF818)
  ------ inclusion threshold ------
      0.011   15.2   0.1       0.22   11.0   0.1    2.1  1  Peptidase_S9   Prolyl oligopeptidase family
      0.044   13.7   0.0        3.3    7.6   0.0    2.2  1  UPF0227        Uncharacterised protein family (UPF0227)
      0.056   12.9   0.0      0.079   12.5   0.0    1.2  1  Citrate_bind   ATP citrate lyase citrate-binding


Domain annotation for each model (and alignments):
>> Hydrolase_4  Serine aminopeptidase, S33
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.2   0.0   5.7e-08   0.00014       7     110 ..      51     152 ..      47     169 .. 0.74
   2 !    8.4   0.0   0.00046       1.2     188     232 ..     180     225 ..     174     229 .. 0.80

  Alignments for each domain:
  == domain 1  score: 21.2 bits;  conditional E-value: 5.7e-08
  Hydrolase_4   7 vvlvHGlaehsgryaelaeaLaaq.GfavyalDhrGhGrsegkrghvpsfddyvdDlaafvekvk...eehpelplfllGhSmGGliallyllrypdk 100
                  ++++H  ae  g +  +  ++ ++  ++v+a+ + G+G+s g     ps d ++ D++a+++ ++   + +pe+ ++l+G S G   +  ++ r++  
   KOO22846.1  51 ILVSHANAEDLGIVLGFWSYMSDAlQVDVFAYEYSGYGHSTGT----PSEDNMYSDARAALQLLVdgfKLKPERDIVLYGKSIGTCPTSYLAGRHRF- 143
                  667777777777777777777654389*************665....5577777777777776663333677889*********9877777666654. PP

  Hydrolase_4 101 vaglilsaPa 110
                   +g++l++ +
   KOO22846.1 144 -RGVMLVSGL 152
                  .999998866 PP

  == domain 2  score: 8.4 bits;  conditional E-value: 0.00046
  Hydrolase_4 188 akitlPllllhGeaDkvvdpeasrelyerlgsk.dktlklypglyH 232
                  a+ + P +++hG++D+v++ ++ ++l++++++      ++++g+ H
   KOO22846.1 180 AASKSPHQIIHGTHDEVIPLSNGHDLHAAASKYhPLPPAWIDGATH 225
                  556789*******************999998654555666666666 PP

>> Abhydrolase_1  alpha/beta hydrolase fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.1   3.5e-06    0.0091       5     106 ..      53     151 ..      50     166 .. 0.74
   2 !    6.3   0.0    0.0026       6.6     201     236 ..     173     208 ..     153     218 .. 0.82

  Alignments for each domain:
  == domain 1  score: 15.7 bits;  conditional E-value: 3.5e-06
                    EE-STTTCGGG....GTTGHHHHHHHHTTSEEEEEEETTSTTSSSTTTGB.CHHSHHHHHHHHHHH...HHHCTTSSEEEEEETHHHHHHHHHHHH CS
  Abhydrolase_1   5 ilhGlpgssdv....waerglapaLakdgfdvillDlrGvgySspapacinddygtasvaddldri...ldalgddkltlvGhSmGGmialayaae 93 
                    + h+ ++ +++    w    + +aL   + dv+++   G+g+S+  p++  d++  +  ++ l+ +       + + ++l G S G+   +++a +
     KOO22846.1  53 VSHANAEDLGIvlgfWSY--MSDAL---QVDVFAYEYSGYGHSTGTPSE--DNMYSD-ARAALQLLvdgFKLKPERDIVLYGKSIGTCPTSYLAGR 140
                    556666655554442444..55555...67******************8..766664.777777553555556666799****************8 PP

                    HGGGEEEEEEESE CS
  Abhydrolase_1  94 yperVkalvllga 106
                      +r ++++l+++
     KOO22846.1 141 --HRFRGVMLVSG 151
                    ..89999999987 PP

  == domain 2  score: 6.3 bits;  conditional E-value: 0.0026
                    HHHHHCTHHHHSEEEEEEETTCSSSCHHHHHHHHHC CS
  Abhydrolase_1 201 llrlrelknvlaptlvisgtsDplvppkaledlaql 236
                    ++++++l + ++p  +i+gt+D ++p +++ dl ++
     KOO22846.1 173 FNNIGRLAASKSPHQIIHGTHDEVIPLSNGHDLHAA 208
                    455566899999**************9998888766 PP

>> Abhydrolase_6  Alpha/beta hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.7   0.6     4e-07     0.001      14     151 ..      68     247 ..      51     281 .. 0.47

  Alignments for each domain:
  == domain 1  score: 19.7 bits;  conditional E-value: 4e-07
                    G.C.HHHHHHHHCCTCEEEEE--TTSTS-GGCS...--HHHCHHH.HHHHCCTT...TTSEEEEEETCHHHHHHHHHHCC..EEEEES-....... CS
  Abhydrolase_6  14 W.l.vapLaallaagvhvlapDlpGhGrsdppp...ldledladl.aalldelaa.gggpvvlvGHSlGGalalaaaplalvvgvlldp....... 95 
                    W +  + L      +v v+a+ + G+G+s++ p     ++d+++    l+d+++    +++vl G S G+   + +a   + +gv+l +       
     KOO22846.1  68 WsYmSDAL------QVDVFAYEYSGYGHSTGTPsedNMYSDARAAlQLLVDGFKLkPERDIVLYGKSIGTCPTSYLAGRHRFRGVMLVSglasgsr 157
                    42224455......6777********96655552225555543333445555544889999********876666444556688888886777777 PP

                    .........................................----TTTS----TTHHHHHHTT-CCCCHCCH....S-HSCCCCHHH....C.... CS
  Abhydrolase_6  96 .......................................pptalpagllaaalelllallallrllawlsre....plprlfladed....a.... 140
                                                            p++ +++l                    ++++    plp+ ++++ +    +    
     KOO22846.1 158 vlfpttklypldilyfnnigrlaasksphqiihgthdevIPLSNGHDL--------------------HAAAskyhPLPPAWIDGAThnnlEtvhs 233
                    776555554333333333333333333222222222211111111111....................1111223344444444333222202221 PP

                    ...CCCHCHCCCGH CS
  Abhydrolase_6 141 ...daawrarlarl 151
                        +++ra l +l
     KOO22846.1 234 vayMRTFRAFLKHL 247
                    11122222222222 PP

>> DUF818  Chlamydia CHLPS protein (DUF818)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   0.0   4.4e-06     0.011     162     227 ..      67     132 ..      50     140 .. 0.91

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 4.4e-06
      DUF818 162 slkrlakllganilvfnYPGvmsskGeitrenlakayqaCvrYLrDkeqGPkakeiiayGYsLGtl 227
                 ++  ++++l+ ++  + Y G  +s+G  + +n+ +  +a  + L D  +    ++i+ yG s+Gt 
  KOO22846.1  67 FWSYMSDALQVDVFAYEYSGYGHSTGTPSEDNMYSDARAALQLLVDGFKLKPERDIVLYGKSIGTC 132
                 688899999**************************************999999***********95 PP

>> Peptidase_S9  Prolyl oligopeptidase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.1   8.7e-05      0.22      42     209 ..      97     248 ..      86     251 .. 0.75

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 8.7e-05
                   HHHHHHHHHHHHHHHHTT.S--GGGEEEEEETHHHHHHHHHHHH-GGG-SEEEEESE---CCCHHCSTTSTHHHCCCC--TTTCHHHHHHHHHH-CG CS
  Peptidase_S9  42 qnefdDfiaaaealakeg.yvdserlaitGgSyGGyltgaalnqrpdlFkaavaevpvvdvlrydsdtdllteeymewgnpeeneegykelspyspl 137
                   +n ++D  aa++ l++ + +  ++ ++++G S G   t  +++   ++F++++ + + +   r    t   t+    ++      +   +++++  l
    KOO22846.1  97 DNMYSDARAALQLLVDGFkLKPERDIVLYGKSIGTCPTSYLAG--RHRFRGVMLVSGLASGSRVLFPT---TK---LYP-----LD-ILYFNNIGRL 179
                   6788899999999999996666666999999999999999998..77899999988888766655552...22...222.....22.3367888888 PP

                   GG-----EEEEEEETT-SSS-THHHHHHHHHHH--S-SEEEEEETTS-SSTTSSHHHHHHHHHHHHHHHHHC CS
  Peptidase_S9 138 dnvkaypplLlihGlaDdrvppaealklvaaLqkkgknvlllifpdegHgvgkprakveelarllaFlkeal 209
                   ++   + p  +ihG++D+ +p++++  l aa  k  +++   +  ++ H   +  ++v+  +++ aFlk+ l
    KOO22846.1 180 AA--SKSPHQIIHGTHDEVIPLSNGHDLHAAASK-YHPLPPAWIDGATHNNLETVHSVAYMRTFRAFLKHLL 248
                   88..88888899*********9999999998766.5667777777888877777777788888888887766 PP

>> UPF0227  Uncharacterised protein family (UPF0227)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.6   0.0    0.0013       3.3     132     170 ..     181     225 ..      91     242 .. 0.65

  Alignments for each domain:
  == domain 1  score: 7.6 bits;  conditional E-value: 0.0013
     UPF0227 132 krperilvllskqDevldy......rravaefraaaeiveddgdH 170
                   +++ +++++++Dev++       + a+ ++++     +d+ +H
  KOO22846.1 181 ASKSPHQIIHGTHDEVIPLsnghdlHAAASKYHPLPPAWIDGATH 225
                 345667778888888877644433345555666666666666666 PP

>> Citrate_bind  ATP citrate lyase citrate-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   3.1e-05     0.079      45     100 ..      71     128 ..      49     138 .. 0.84

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 3.1e-05
  Citrate_bind  45 yaDtiadlglaselanYgeysGapseeqtyeyaktildlmtre..krpdgkvliiGgg 100
                    +D++    +a e + Yg   G pse+++y+ a++ l+l++     +p+  +++ G +
    KOO22846.1  71 MSDALQVDVFAYEYSGYGHSTGTPSEDNMYSDARAALQLLVDGfkLKPERDIVLYGKS 128
                   58999999*******************************9987544555566666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (284 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       283  (0.0157845); expected 358.6 (0.02)
Passed bias filter:                      271  (0.0151152); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.44u 0.23s 00:00:00.67 Elapsed: 00:00:00.39
# Mc/sec: 2183.27
//
Query:       KOO22847.1  [L=209]
Description: hypothetical protein Ctob_011008 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.2e-11   41.6   0.0      6e-06   25.4   0.0    2.6  2  EF-hand_1        EF hand
    2.7e-10   39.3   0.0    2.6e-05   23.8   0.0    2.5  2  EF-hand_6        EF-hand domain
    1.1e-08   34.2   0.0    3.8e-05   23.0   0.0    2.5  2  EF-hand_5        EF hand
      2e-07   31.3   0.0      0.027   14.9   0.0    2.5  2  EF-hand_7        EF-hand domain pair
    0.00015   22.2   0.1    0.00027   21.4   0.1    1.4  1  DUF16            Protein of unknown function DUF16
     0.0004   20.7   0.7     0.0011   19.4   0.5    1.7  2  Snapin_Pallidin  Snapin/Pallidin
    0.00069   19.3   1.4     0.0011   18.6   1.4    1.3  1  Syntaxin         Syntaxin
    0.00083   19.2   0.0     0.0024   17.7   0.0    1.8  1  EF-hand_8        EF-hand domain pair
     0.0034   17.5   0.2      0.018   15.2   0.3    2.0  2  Dockerin_1       Dockerin type I domain
     0.0085   16.1   6.6       0.02   14.9   1.2    2.4  2  TMF_DNA_bd       TATA element modulatory factor 1 DNA binding
  ------ inclusion threshold ------
       0.01   14.1   1.0      0.014   13.6   1.0    1.1  1  EzrA             Septation ring formation regulator, EzrA
      0.014   14.5   0.3      0.019   14.1   0.3    1.2  1  Atg14            Vacuolar sorting 38 and autophagy-related su
      0.014   14.3   1.1      0.021   13.7   1.1    1.2  1  Spc7             Spc7 kinetochore protein
      0.014   14.3   1.0      0.017   14.0   1.0    1.0  1  DUF812           Protein of unknown function (DUF812)
      0.019   15.5   1.0      0.062   13.9   1.0    1.9  1  SlyX             SlyX
      0.022   14.9   0.2      0.044   13.9   0.2    1.4  1  Mod_r            Modifier of rudimentary (Mod(r)) protein
      0.031   14.6   0.7      0.066   13.5   0.7    1.5  1  BLOC1_2          Biogenesis of lysosome-related organelles co
      0.039   14.2   3.1      0.075   13.3   3.1    1.4  1  Seryl_tRNA_N     Seryl-tRNA synthetase N-terminal domain
      0.042   14.1   0.6       0.17   12.2   0.1    2.0  2  KxDL             Uncharacterized conserved protein
      0.058   13.4   0.3      0.098   12.7   0.3    1.2  1  DUF1664          Protein of unknown function (DUF1664)
       0.06   13.1   0.2       0.14   11.9   0.2    1.6  1  Phage_Nu1        Phage DNA packaging protein Nu1
      0.066   13.5   0.1       0.18   12.1   0.0    1.8  2  SPARC_Ca_bdg     Secreted protein acidic and rich in cysteine
       0.07   13.6   0.8      0.091   13.3   0.8    1.2  1  AAA_23           AAA domain
      0.077   12.9   2.8       0.21   11.5   0.1    2.6  3  Matrilin_ccoil   Trimeric coiled-coil oligomerisation domain 
       0.12   12.0   2.0        1.6    8.2   0.0    2.8  3  DUF533           Protein of unknown function (DUF533)
       0.12   12.8   1.9       0.25   11.8   1.9    1.5  1  ZapB             Cell division protein ZapB
       0.26   11.5   2.6       0.28   11.4   1.2    1.8  1  Med21            Subunit 21 of Mediator complex


Domain annotation for each model (and alignments):
>> EF-hand_1  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.4   0.0     9e-09     6e-06       3      28 ..      35      60 ..      33      61 .. 0.92
   2 !   13.7   0.0   5.2e-05     0.035       6      28 ..      75      97 ..      71      98 .. 0.88

  Alignments for each domain:
  == domain 1  score: 25.4 bits;  conditional E-value: 9e-09
                HHHHHHHTTTSSSEEEHHHHHHHHHH CS
   EF-hand_1  3 keiFrefDkDgdGkIdfeEfkellkk 28
                k +F+++D++g+G+Id  E++++l++
  KOO22847.1 35 KSAFKDADVNGSGTIDTAELRTILQS 60
                789*******************9986 PP

  == domain 2  score: 13.7 bits;  conditional E-value: 5.2e-05
                HHHHTTTSSSEEEHHHHHHHHHH CS
   EF-hand_1  6 FrefDkDgdGkIdfeEfkellkk 28
                 + +D+D +G+Id  E+++++++
  KOO22847.1 75 LSFYDVDANGHIDQTEWLKIVQE 97
                5679**************99976 PP

>> EF-hand_6  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.8   0.0   3.9e-08   2.6e-05       3      29 ..      35      60 ..      33      62 .. 0.91
   2 !   12.9   0.0   0.00012     0.083       8      27 ..      77      96 ..      72     101 .. 0.87

  Alignments for each domain:
  == domain 1  score: 23.8 bits;  conditional E-value: 3.9e-08
   EF-hand_6  3 reaFklfDkdgdGkidaeElrkalrka 29
                ++aFk  D++g+G+id++Elr +l+ +
  KOO22847.1 35 KSAFKDADVNGSGTIDTAELRTILQ-S 60
                79**********************9.5 PP

  == domain 2  score: 12.9 bits;  conditional E-value: 0.00012
   EF-hand_6  8 lfDkdgdGkidaeElrkalr 27
                 +D+d +G+id+ E+ k+ +
  KOO22847.1 77 FYDVDANGHIDQTEWLKIVQ 96
                69**************9987 PP

>> EF-hand_5  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.0   0.0   5.7e-08   3.8e-05       3      24 ..      36      57 ..      33      58 .. 0.89
   2 !    8.7   0.0    0.0019       1.3       4      24 ..      74      94 ..      72      98 .. 0.86

  Alignments for each domain:
  == domain 1  score: 23.0 bits;  conditional E-value: 5.7e-08
                HHHHHH-SS-SSCE-HHHHHHH CS
   EF-hand_5  3 dtFqaiDlNgDGkIskeELktl 24
                 +F+ +D+Ng+G+I+  EL+t+
  KOO22847.1 36 SAFKDADVNGSGTIDTAELRTI 57
                48******************96 PP

  == domain 2  score: 8.7 bits;  conditional E-value: 0.0019
                HHHHH-SS-SSCE-HHHHHHH CS
   EF-hand_5  4 tFqaiDlNgDGkIskeELktl 24
                +++  D++  G+I+  E+ ++
  KOO22847.1 74 VLSFYDVDANGHIDQTEWLKI 94
                67789*************875 PP

>> EF-hand_7  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.0   4.1e-05     0.027       5      30 ..      35      60 ..      30      77 .. 0.78
   2 !   14.5   0.0   5.6e-05     0.037      10      36 ..      77     124 ..      68     167 .. 0.76

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 4.1e-05
   EF-hand_7  5 keaFkelDtdgdgyldkeellrllrk 30
                k aFk  D++g+g +d +el+ +l++
  KOO22847.1 35 KSAFKDADVNGSGTIDTAELRTILQS 60
                567******************88874 PP

  == domain 2  score: 14.5 bits;  conditional E-value: 5.6e-05
   EF-hand_7  10 elDtdgdgyldkeellrllrkifqga.....................g 36 
                  +D+d +g++d++e l++++ + qg                      +
  KOO22847.1  77 FYDVDANGHIDQTEWLKIVQELLQGDihngkskapltydtgakaspyE 124
                 59************888*****99998888777777776666666663 PP

>> DUF16  Protein of unknown function DUF16
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.4   0.1   4.1e-07   0.00027      42     103 ..     133     194 ..     125     195 .. 0.94

  Alignments for each domain:
  == domain 1  score: 21.4 bits;  conditional E-value: 4.1e-07
                 HHH...HHHHHHHHHHHHHHHHHHHHHHHHHHHHH.......HHHHHHHHHHHHHHHHHHHC CS
       DUF16  42 kvdklgeqinkleqkvekqgekikelkveqkaqgeelnkvdetleliletLqkinkRlDsie 103
                 +++ l  q+++l ++ e+q + i  l+++  a ++++++v+e  e   + L++++kRl sie
  KOO22847.1 133 EMEFLRAQVDELREANEEQAKTIASLSKKLAAASDAFKSVGEQHEAYKNKLEEVSKRLASIE 194
                 5667889*****************************************************99 PP

>> Snapin_Pallidin  Snapin/Pallidin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.0       7.7   5.1e+03      20      38 ..      87     105 ..      71     109 .. 0.70
   2 !   19.4   0.5   1.6e-06    0.0011      16      78 ..     135     196 ..     130     197 .. 0.92

  Alignments for each domain:
  == domain 1  score: -2.0 bits;  conditional E-value: 7.7
  Snapin_Pallidin  20 eklkelrqsQeeLleqldr 38 
                      ++ + l+  Qe L+ ++++
       KOO22847.1  87 DQTEWLKIVQELLQGDIHN 105
                      5556677889999988876 PP

  == domain 2  score: 19.4 bits;  conditional E-value: 1.6e-06
  Snapin_Pallidin  16 deldeklkelrqsQeeLleqldrlnekLkeleeaqeaevlpdlkeyakKLvnikkrmsslner 78 
                      + l++++ elr+  ee ++++ +l++kL+ +++a + +v ++ + y++KL ++ kr+ s++ r
       KOO22847.1 135 EFLRAQVDELREANEEQAKTIASLSKKLAAASDAFK-SVGEQHEAYKNKLEEVSKRLASIERR 196
                      55789***********************99998888.99*******************99865 PP

>> Syntaxin  Syntaxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.6   1.4   1.7e-06    0.0011      12      89 ..     131     207 ..     129     209 .] 0.91

  Alignments for each domain:
  == domain 1  score: 18.6 bits;  conditional E-value: 1.7e-06
    Syntaxin  12 kkeiekleeevkklkkqneesktstraksvklkkrmesdikeikkraesvkarLeaLdksnkenekksgegsavdRir 89 
                 ++e+e l+ +v++l+++nee  ++  + s+kl +  +   k++ ++ e+ k++Le+ +k+ ++ e+++ +  + +R++
  KOO22847.1 131 RTEMEFLRAQVDELREANEEQAKTIASLSKKLAAA-SDAFKSVGEQHEAYKNKLEEVSKRLASIERRPPSPDPNQRTK 207
                 689**************************987666.7889*************************9998888899887 PP

>> EF-hand_8  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.7   0.0   3.7e-06    0.0024       2      50 ..      46      93 ..      45      98 .. 0.89

  Alignments for each domain:
  == domain 1  score: 17.7 bits;  conditional E-value: 3.7e-06
   EF-hand_8  2 kgkItreelrrilrilglkkglseee.vdilfrefDtdgdGkisfeEFcv 50
                +g I+++elr+il + g+   + ++e + ++++  D d +G+i+++E + 
  KOO22847.1 46 SGTIDTAELRTILQSCGIT--IEDDEtAAAVLSFYDVDANGHIDQTEWLK 93
                799**********555***..*************************9665 PP

>> Dockerin_1  Dockerin type I domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.5   0.1     0.014       9.4      33      48 ..      37      52 ..      31      60 .. 0.76
   2 !   15.2   0.3   2.7e-05     0.018       2      58 .]      41      99 ..      40      99 .. 0.90

  Alignments for each domain:
  == domain 1  score: 6.5 bits;  conditional E-value: 0.014
                CHGGGSTT-SSCESHH CS
  Dockerin_1 33 ngkaaDvNgDGrvnal 48
                  k aDvNg G+++  
  KOO22847.1 37 AFKDADVNGSGTIDTA 52
                5577899999999865 PP

  == domain 2  score: 15.2 bits;  conditional E-value: 2.7e-05
                TETTSSSC-SHHHHHHHHHHCT..SSEBTTSCCCHGGGSTT-SSCESHHHHHHHHHHHT CS
  Dockerin_1  2 gDVNgDgkVnalDalliinyln..qregqssssngkaaDvNgDGrvnalDallvinyLl 58
                +DVNg+g+++   +  i +      ++++++     ++Dv+ +G ++ +  l + ++Ll
  KOO22847.1 41 ADVNGSGTIDTAELRTILQSCGitIEDDETAAAVLSFYDVDANGHIDQTEWLKIVQELL 99
                6*******99999999999988988889999999***************9999988885 PP

>> TMF_DNA_bd  TATA element modulatory factor 1 DNA binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   1.2     3e-05      0.02      31      62 ..     137     168 ..     132     174 .. 0.88
   2 ?    3.6   0.5       0.1        67      47      69 ..     174     196 ..     170     197 .. 0.86

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 3e-05
  TMF_DNA_bd  31 lnntikkLrkknkelekeikelkkklekleke 62 
                 l++++++Lr+ n+e+ k+i++l+kkl+  +  
  KOO22847.1 137 LRAQVDELREANEEQAKTIASLSKKLAAASDA 168
                 57899*********************988765 PP

  == domain 2  score: 3.6 bits;  conditional E-value: 0.1
  TMF_DNA_bd  47 keikelkkkleklekeleeleer 69 
                 ++ + +k+kle+++k l+++e+r
  KOO22847.1 174 EQHEAYKNKLEEVSKRLASIERR 196
                 5778899********99999976 PP

>> EzrA  Septation ring formation regulator, EzrA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   1.0   2.1e-05     0.014     115     175 ..     132     195 ..     129     197 .. 0.83

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 2.1e-05
                 HHHHHHHHHHTHHHHTTTTTHHHHHHHHHHHHHHH...HT--TTTTHHHHHHHHHHHHHHHH-- CS
        EzrA 115 ekikkileelkelteseeknreeieklkekYrelr...kkllanrfsygealeelekqleniek 175
                 ++++ ++++++el+e +e++ + i +l +k    +   k++ ++ ++y++ lee+ k+l+ ie+
  KOO22847.1 132 TEMEFLRAQVDELREANEEQAKTIASLSKKLAAASdafKSVGEQHEAYKNKLEEVSKRLASIER 195
                 68899999*******************9999766511156668999999999999999999997 PP

>> Atg14  Vacuolar sorting 38 and autophagy-related subunit 14
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   0.3   2.9e-05     0.019      58     111 ..     137     190 ..     108     208 .. 0.58

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 2.9e-05
       Atg14  58 ledkiknkkakleelksliadlrerlqelkdklsqlkkeieekkkklaklsdkl 111
                 l+++++ ++++ ee+ ++ia+l+++l+  +d  ++  +++e+ k+kl++ s+ l
  KOO22847.1 137 LRAQVDELREANEEQAKTIASLSKKLAAASDAFKSVGEQHEAYKNKLEEVSKRL 190
                 334444444444444444444444444444444444444444444444444444 PP

>> Spc7  Spc7 kinetochore protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   1.1   3.1e-05     0.021     197     256 ..     130     189 ..     118     197 .. 0.56

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 3.1e-05
        Spc7 197 dkeeLeelreelaelkaeieekkkelaelqeqleeleekieelkeqkseleeeiaeaerv 256
                  ++e+e lr +++el +  ee+ k +a+l ++l++ +++++++ eq + ++++++e  + 
  KOO22847.1 130 PRTEMEFLRAQVDELREANEEQAKTIASLSKKLAAASDAFKSVGEQHEAYKNKLEEVSKR 189
                 345555555566666666666666666666666666666665555555555555554433 PP

>> DUF812  Protein of unknown function (DUF812)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   1.0   2.6e-05     0.017     243     368 ..      19     191 ..       2     208 .. 0.66

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 2.6e-05
      DUF812 243 krkkeklqkrlaeqlrkaalkseeae.ssasksksdlaellsefseksetdslktkgsrfthaekl.qftke........................... 312
                 ++ +++  +++ + l k+a k+   + s+++ ++++l+++l++ +   e+d++++    f + ++  ++ +                            
  KOO22847.1  19 RKFRDQYGEEAFRVLAKSAFKDADVNgSGTI-DTAELRTILQSCGITIEDDETAAAVLSFYDVDANgHIDQTewlkivqellqgdihngkskapltydt 116
                 3447777788888888888888888756665.8899999999996655555555555555544444322222345555558888888888888777777 PP

      DUF812 313 ................ela....kkaeteeelkkkreeeleelqeqieeleskieeleeeikklessikqveeele 368
                                 e      +++++  e+++++ + +++l++++ +++   +++ e+ +++++++++v++ l 
  KOO22847.1 117 gakaspyeplkptprtE-MeflrAQVDELREANEEQAKTIASLSKKLAAASDAFKSVGEQHEAYKNKLEEVSKRLA 191
                 77666666665554431.0455567777778888888888888888888888888888888888888877777665 PP

>> SlyX  SlyX
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   1.0   9.4e-05     0.062      13      59 ..     135     181 ..     131     202 .. 0.64

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 9.4e-05
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-XXXXXXXXXXXX CS
        SlyX  13 afqedtieeLndvvaeqqqqidrlqrqlrllaerlkeleessgasea 59 
                  f+  +++eL ++  eq+++i+ l ++l++  + +k++ e+++a ++
  KOO22847.1 135 EFLRAQVDELREANEEQAKTIASLSKKLAAASDAFKSVGEQHEAYKN 181
                 56667777777777777777777777777777777777776664333 PP

>> Mod_r  Modifier of rudimentary (Mod(r)) protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.2   6.7e-05     0.044      33      91 ..     132     190 ..     126     203 .. 0.89

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 6.7e-05
       Mod_r  33 eekeellaeneslaeknlslepeleelrselqekleelkelekefeekeqeldellqkf 91 
                 +e e l+a+  +l e+n ++ +++  l+++l+++ + +k++ ++ e+++++l+e+++++
  KOO22847.1 132 TEMEFLRAQVDELREANEEQAKTIASLSKKLAAASDAFKSVGEQHEAYKNKLEEVSKRL 190
                 56788999999999999999999*************************99999999775 PP

>> BLOC1_2  Biogenesis of lysosome-related organelles complex-1 subunit 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.7    0.0001     0.066      13      75 ..     132     191 ..     129     195 .. 0.81

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 0.0001
     BLOC1_2  13 aeleatvedyklLeklNeaasekykklkdvaaslekkleklnekyeelqpylqqidqiekqvt 75 
                  e+e  +++++ L + Ne++++ +++l++++a +++ ++ + e++e+ +++l+++    k+++
  KOO22847.1 132 TEMEFLRAQVDELREANEEQAKTIASLSKKLAAASDAFKSVGEQHEAYKNKLEEVS---KRLA 191
                 689999999****************************9999997776666666554...4444 PP

>> Seryl_tRNA_N  Seryl-tRNA synthetase N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   3.1   0.00011     0.075      38      99 ..     134     192 ..     131     197 .. 0.84

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 0.00011
                   HHHHHHHHHHHHHHHHHHHHHCCCCCCTTS-TCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH CS
  Seryl_tRNA_N  38 rrelqveleelqaerNelskeIgkakkkkedaeeliaevkelkeelkaleaelkeleaelek 99 
                   ++ l+++++el++   e +k+I++++kk    ++  +  k+++e+ +a++++l+e++++l +
    KOO22847.1 134 MEFLRAQVDELREANEEQAKTIASLSKKL---AAASDAFKSVGEQHEAYKNKLEEVSKRLAS 192
                   556899********************975...566678889999999999999999998865 PP

>> KxDL  Uncharacterized conserved protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   0.0       2.6   1.7e+03      38      82 ..       9      25 ..       3      28 .. 0.49
   2 ?   12.2   0.1   0.00026      0.17      24      76 ..     143     195 ..     137     201 .. 0.91

  Alignments for each domain:
  == domain 1  score: -0.6 bits;  conditional E-value: 2.6
        KxDL 38 lsqerlaklrarfkqgtkllkevkkdLesifkkirslkaklakky 82
                l+q+ +a+                            + +k++++y
  KOO22847.1  9 LTQTAYAS----------------------------IARKFRDQY 25
                44444444............................444444444 PP

  == domain 2  score: 12.2 bits;  conditional E-value: 0.00026
        KxDL  24 rlnkknreLlelnalsqerlaklrarfkqgtkllkevkkdLesifkkirslka 76 
                 +l + n+e  + +a ++++la +++ fk+  +     k+ Le + k++ s+++
  KOO22847.1 143 ELREANEEQAKTIASLSKKLAAASDAFKSVGEQHEAYKNKLEEVSKRLASIER 195
                 677888999999999***********************************987 PP

>> DUF1664  Protein of unknown function (DUF1664)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.3   0.00015     0.098      64     122 ..     137     195 ..     130     196 .. 0.81

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 0.00015
     DUF1664  64 Lssridrvdkkldeqkeiskeikeevtevredlseigedvesvkeavegleskleriee 122
                 L +++d++ +  +eq++++++++++++++++  +++ge+ e+ k+  e++ ++l++ie 
  KOO22847.1 137 LRAQVDELREANEEQAKTIASLSKKLAAASDAFKSVGEQHEAYKNKLEEVSKRLASIER 195
                 66788888888888888888888888888888888888888888888888888888875 PP

>> Phage_Nu1  Phage DNA packaging protein Nu1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.2   0.00022      0.14      39      94 ..     112     167 ..     100     195 .. 0.71

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 0.00022
   Phage_Nu1  39 vvfdtaavirWyaer..daeieneklrkeveelraaaeadldpgtieyerrrlikaqa 94 
                 + +dt a ++ y         e e lr +v+elr+a e +++  ti    ++l +a  
  KOO22847.1 112 LTYDTGAKASPYEPLkpTPRTEMEFLRAQVDELREANEEQAK--TIASLSKKLAAASD 167
                 568888888888754114567999***************999..99988877766643 PP

>> SPARC_Ca_bdg  Secreted protein acidic and rich in cysteine Ca binding region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   0.00027      0.18      50     112 ..      28      93 ..       2      94 .. 0.78
   2 ?   -1.6   0.0       4.9   3.2e+03      44      44 ..     161     161 ..     130     193 .. 0.54

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 0.00027
  SPARC_Ca_bdg  50 keckepvawkFsklDtnsdkvlsksELaplrapl...vklehCikpflescDadkdkkislkEwce 112
                   ++++  ++  F++ D+n  ++++++EL+ + ++    ++ ++  ++ l+  D+d +++i+++Ew +
    KOO22847.1  28 EAFRVLAKSAFKDADVNGSGTIDTAELRTILQSCgitIEDDETAAAVLSFYDVDANGHIDQTEWLK 93 
                   4455566778******************998764322666788999******************85 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 4.9
  SPARC_Ca_bdg  44 e 44 
                   +
    KOO22847.1 161 K 161
                   1 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.8   0.00014     0.091      75     196 ..      17     194 ..       4     196 .. 0.56

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 0.00014
      AAA_23  75 veltfenkdgrytrsiererelskkkgkttkkaklelleideleqfise...llgskkiilnlilflgqer.......feefelkdkke.......... 153
                 + ++f+++ g++       r l+k+  k  + +    ++++el+ ++++    ++ ++    +++f++ +        ++ +  ++ ++          
  KOO22847.1  17 IARKFRDQYGEE-----AFRVLAKSAFKDADVNGSGTIDTAELRTILQScgiTIEDDETAAAVLSFYDVDAnghidqtEWLKIVQELLQgdihngkska 110
                 555566666643.....2233444444444444455555555555555533322222223333333333333334344222222222224444444445 PP

      AAA_23 154 .............................rleelekeleeledekkllekl............eqekekekeleeleeeleeil 196
                                              +++el+++ ee+ +++  l k+            eq + ++++lee+ ++l +i+
  KOO22847.1 111 pltydtgakaspyeplkptprtemeflraQVDELREANEEQAKTIASLSKKlaaasdafksvgEQHEAYKNKLEEVSKRLASIE 194
                 55566666666666666666676777777777777777777777777777777789999999999999***********99987 PP

>> Matrilin_ccoil  Trimeric coiled-coil oligomerisation domain of matrilin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.0       4.3   2.9e+03      23      36 ..       5      19 ..       3      22 .. 0.66
   2 ?    0.3   0.1      0.95   6.3e+02      23      33 ..     154     164 ..     150     167 .. 0.76
   3 ?   11.5   0.1   0.00032      0.21      26      44 ..     178     196 ..     170     196 .. 0.80

  Alignments for each domain:
  == domain 1  score: -1.8 bits;  conditional E-value: 4.3
                    HHHHHHHH.HHHHHH CS
  Matrilin_ccoil 23 eiqaLtqk.Leavtk 36
                    ++ +Ltq+  +++++
      KOO22847.1  5 KLSQLTQTaYASIAR 19
                    578898853666665 PP

  == domain 2  score: 0.3 bits;  conditional E-value: 0.95
                     HHHHHHHHHHH CS
  Matrilin_ccoil  23 eiqaLtqkLea 33 
                     +i +L++kL+a
      KOO22847.1 154 TIASLSKKLAA 164
                     57889999987 PP

  == domain 3  score: 11.5 bits;  conditional E-value: 0.00032
                     HHHHHHHHHHHHHHHHHHH CS
  Matrilin_ccoil  26 aLtqkLeavtkRlealEnk 44 
                     a   kLe+v+kRl+  E +
      KOO22847.1 178 AYKNKLEEVSKRLASIERR 196
                     55679*********99976 PP

>> DUF533  Protein of unknown function (DUF533)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.4   0.0       0.3     2e+02      85     110 ..      46      71 ..       9      77 .. 0.83
   2 ?    8.2   0.0    0.0025       1.6      84     107 ..      82     105 ..      80     113 .. 0.87
   3 ?   -0.1   0.3       0.9     6e+02      91     124 ..     132     165 ..     130     181 .. 0.74

  Alignments for each domain:
  == domain 1  score: 1.4 bits;  conditional E-value: 0.3
      DUF533  85 DGhideeErqrIlqeleelgldaeek 110
                  G id++E ++Ilq+ +    d+e+ 
  KOO22847.1  46 SGTIDTAELRTILQSCGITIEDDETA 71 
                 599**********9988766555555 PP

  == domain 2  score: 8.2 bits;  conditional E-value: 0.0025
      DUF533  84 ADGhideeErqrIlqeleelglda 107
                 A+Ghid++E  +I+qel + ++++
  KOO22847.1  82 ANGHIDQTEWLKIVQELLQGDIHN 105
                 99***************9988876 PP

  == domain 3  score: -0.1 bits;  conditional E-value: 0.9
      DUF533  91 eErqrIlqeleelgldaeekalledeLrkPldlq 124
                 +E++ + ++++el+  +ee+a   + L+k l ++
  KOO22847.1 132 TEMEFLRAQVDELREANEEQAKTIASLSKKLAAA 165
                 6889999999999999999988888888777654 PP

>> ZapB  Cell division protein ZapB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   1.9   0.00038      0.25      20      66 ..     134     187 ..     132     193 .. 0.69

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 0.00038
        ZapB  20 itlLqmeieeLkeeneelkeenrele.....eeneqlk.......eereawqerlkkLL 66 
                 ++ L+ +++eL+e nee ++ ++ l+     +             e++ea +++l+ + 
  KOO22847.1 134 MEFLRAQVDELREANEEQAKTIASLSkklaaA-----SdafksvgEQHEAYKNKLEEVS 187
                 6779999********99999999999555550.....4444455577777777776654 PP

>> Med21  Subunit 21 of Mediator complex
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   1.2   0.00042      0.28      98     143 ..     146     191 ..     132     192 .. 0.91

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00042
       Med21  98 sseeeqeerikeLeeelreveeereekvkekeellkkveellrava 143
                 + +eeq ++i++L+++l+++ +  + + ++ e+  +k+ee+ + +a
  KOO22847.1 146 EANEEQAKTIASLSKKLAAASDAFKSVGEQHEAYKNKLEEVSKRLA 191
                 6789************************************988765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (209 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1766  (0.0984996); expected 358.6 (0.02)
Passed bias filter:                     1229  (0.0685482); expected 358.6 (0.02)
Passed Vit filter:                       214  (0.011936); expected 17.9 (0.001)
Passed Fwd filter:                        27  (0.00150594); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              27  [number of targets reported over threshold]
# CPU time: 0.54u 0.28s 00:00:00.82 Elapsed: 00:00:00.41
# Mc/sec: 1517.93
//
Query:       KOO22848.1  [L=379]
Description: sun protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.6e-39  134.5   0.0    4.6e-39  134.1   0.0    1.1  1  Methyltr_RsmB-F  16S rRNA methyltransferase RsmB/F
    2.1e-07   31.3   0.0    3.6e-07   30.5   0.0    1.3  1  FtsJ             FtsJ-like methyltransferase
    1.3e-05   25.4   0.0    2.3e-05   24.6   0.0    1.4  1  NusB             NusB family
     0.0063   16.3   0.0      0.011   15.6   0.0    1.3  1  Methyltransf_31  Methyltransferase domain
  ------ inclusion threshold ------
      0.016   15.9   0.1      0.055   14.2   0.1    1.9  1  Methyltransf_25  Methyltransferase domain
      0.016   15.0   0.0      0.023   14.4   0.0    1.2  1  PCMT             Protein-L-isoaspartate(D-aspartate) O-methyl
      0.032   14.7   0.0       0.12   12.9   0.0    1.9  2  Methyltr_RsmF_N  N-terminal domain of 16S rRNA methyltransfer
      0.087   12.4   0.0       0.13   11.9   0.0    1.2  1  Methyltransf_15  RNA cap guanine-N2 methyltransferase


Domain annotation for each model (and alignments):
>> Methyltr_RsmB-F  16S rRNA methyltransferase RsmB/F
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  134.1   0.0     2e-42   4.6e-39       5     200 .]     164     372 ..     159     372 .. 0.86

  Alignments for each domain:
  == domain 1  score: 134.1 bits;  conditional E-value: 2e-42
                      ---TT-EEEESS-TTSHHHHHHHHHTTTTSEEEEEESSCCCHHHHHHHHHHTT--SEEEEES-CTCCHHHHCC..........EEEEEEEE--C CS
  Methyltr_RsmB-F   5 apqeeetilDlcaaPGgKTthiaelmknkgtvvAvdankeRlkrvaenlkrLgvtntivleaDarkidkvlgg........elfDriLlDaPCs 90 
                      ap ++   lDlcaaPGgKT+h+aelm ++g+++ v+ +++++  v e+  rLg+  + v+ aDa++  +vl +        +l D + +DaPCs
       KOO22848.1 164 APPPDGITLDLCAAPGGKTAHLAELMGDRGEIISVELHERKAALVRETCARLGLSCVRVVAADASNA-TVLREllsmhagpRLADCVVVDAPCS 256
                      57778889********************************************************998.44444566788899************ PP

                      CGGGTTT-TCHHHH-.-HHHHHHHHHHHHHHHHHHCCCEEEEEEEEEEES--STTTTHHHHHHHHHH-TTEEEESSBSTTSTTSSECEEC.... CS
  Methyltr_RsmB-F  91 gtgvirrdpdvklrr.kekdiaqlaklqkellsaaidllkkgGvlvYsTCsvlveEneevieeaLkkredvelvetelsepkglklgeea.... 179
                      g+g++rr+p+ ++r  +++ +a l  lq +ll+a +  +++gG+l +s Cs l +E++e ++++L++++ +e + ++++e   l+    +    
       KOO22848.1 257 GMGTLRRNPEHRYRVdDPSRLAGLCALQDRLLDAGACCVRPGGTLTFSVCSPLRAETTERVAAFLRRHP-HEFERVPVEEDGPLAPFAAEdehg 349
                      ************98626789************************************************5.566666666644333222223467 PP

                      ..TSEEE-TTTTSS-SEEEEEEE CS
  Methyltr_RsmB-F 180 ..gtlrllPhtenkdgffiaklk 200
                        + +r + h +  d+ f+ kl+
       KOO22848.1 350 arTCVRTWTHLHPADSHFACKLR 372
                      7778999***********99985 PP

>> FtsJ  FtsJ-like methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.5   0.0   1.6e-10   3.6e-07      23     155 ..     169     331 ..     147     335 .. 0.75

  Alignments for each domain:
  == domain 1  score: 30.5 bits;  conditional E-value: 1.6e-10
                 -EEEECT-TTSHHHHHHCCT.T.-SEEEEEESSSS.........HHH..TTEEEECS-CCCSSHHHHHC.HCHHHSSEEEEEE--S-SS-CHHHHHHHH CS
        FtsJ  23 ktvvDlgaaPGgwsqvllqrlgakgkvvavDlqpm.........apl..pgvttiqgditdpetiekik.ealserkvdlvvsDgapdvsgvhdldeyl 109
                 +  +Dl+aaPGg +  l++ +g +g +++v l +          a l  + v+++ +d  + ++ ++++  + + r +d+vv D    +sg+ +l    
  KOO22848.1 169 GITLDLCAAPGGKTAHLAELMGDRGEIISVELHERkaalvretcARLglSCVRVVAADASNATVLRELLsMHAGPRLADCVVVDAP--CSGMGTLRRNP 265
                 5679****************************888766665543233445666668888877777766514444499*******86..55543333333 PP

                 H..............CCCCHHHHCCHCCCCECCCEEEECCCH......CCCHHHHHHHHHCCEEEE CS
        FtsJ 110 q..............sqLllaalelalkllkpggtfvlkifr......geeteallkqlkkfFekv 155
                 +              + L ++ l  +  +++pggt+ + ++        e+++a+l++  + Fe+v
  KOO22848.1 266 EhryrvddpsrlaglCALQDRLLDAGACCVRPGGTLTFSVCSplraetTERVAAFLRRHPHEFERV 331
                 33448999999***999******************9999999887555555555555555666666 PP

>> NusB  NusB family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.6   0.0     1e-08   2.3e-05      96     134 .]       2      36 ..       1      36 [. 0.90

  Alignments for each domain:
  == domain 1  score: 24.6 bits;  conditional E-value: 1e-08
                 TS-SSHHHHHHH.HHHHHHHHS-HHHHHHHHHHHHHHHH CS
        NusB  96 ylddvPakvaineavelakkygdeksakFvNgVLrkvar 134
                 +l ++P+++a+neav l+k      +++FvNgVLr +ar
  KOO22848.1   2 HL-RTPEYAAVNEAVSLVKPE---AQRRFVNGVLRTLAR 36 
                 56.8**************976...999********9986 PP

>> Methyltransf_31  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.0   4.8e-06     0.011       7      65 ..     171     229 ..     168     260 .. 0.94

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 4.8e-06
  Methyltransf_31   7 vlDlGCGtGeltfelaeelgpkaevvGiDiseeaielArenaqklgldnveFeqgdiee 65 
                       lDl ++ G +t  lae++g+++e+++++  e+   l re +++lgl+ v++ ++d+ +
       KOO22848.1 171 TLDLCAAPGGKTAHLAELMGDRGEIISVELHERKAALVRETCARLGLSCVRVVAADASN 229
                      59***************************************************999876 PP

>> Methyltransf_25  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   0.1   2.4e-05     0.055       2      58 ..     172     230 ..     171     242 .. 0.93

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 2.4e-05
                      EEET-TTSHHHHHHHCTST.SSEEEEEESSHHHHHHHHHHHHHTTT.TEEEEESBCCGB CS
  Methyltransf_25   2 LdlGcGtGrltlalakrlg.kakvtgvDiseemleaareraeeegl.nvefvqgdaedl 58 
                      Ldl++ +G  t++la+ +g +++++ v++ e+  + +re +++ gl  v++v +da++ 
       KOO22848.1 172 LDLCAAPGGKTAHLAELMGdRGEIISVELHERKAALVRETCARLGLsCVRVVAADASNA 230
                      9*****************779**********************9999999*****9875 PP

>> PCMT  Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.4   0.0     1e-05     0.023      52     133 ..     145     227 ..     135     231 .. 0.86

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 1e-05
                 TTEEE--HHHHHHHHHHTT.--TT-EEEEES-TTSHHHHHHHHHHCTTCEEEEEESBHHHHHHHHHHHHHCTTCSEEEEES-G CS
        PCMT  52 ynatiSaphmvalalelle.lkkgarvLevGsGsGyltavlarlvgekgrvvsierikelveeakrnlkkldlenvivvvgDG 133
                 y+   S   + a ++ +l    +    L++ +  G +ta la+l+g++g ++s+e  ++ ++  +++  +l+l+ v vv +D 
  KOO22848.1 145 YQGAFSVQDIGAQCVAWLAaPPPDGITLDLCAAPGGKTAHLAELMGDRGEIISVELHERKAALVRETCARLGLSCVRVVAADA 227
                 556667778889999999944455567******************************9999999************9999996 PP

>> Methyltr_RsmF_N  N-terminal domain of 16S rRNA methyltransferase RsmF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   5.3e-05      0.12      13      89 ..      74     156 ..      63     157 .. 0.76
   2 ?   -1.7   0.0       1.9   4.2e+03      33      62 ..     310     337 ..     306     349 .. 0.73

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 5.3e-05
                      HGG...GHHHHHHHHH-----EEE--TTS..TTHHHHHHH...-SS--B-TT-TTEEES---...TTSHHHHTTS-EE--TTT CS
  Methyltr_RsmF_N  13 lge...eaeaflaaleeprkkglRvNtlKisveeleklse...efelepvpwceeGfyleeeerpgkhplheaGlyYiQEpSa 89 
                      +g+   e+ea   a+++ ++  lRvN l++s++el++  +    +  e vp   + ++     + +  p +++G++ +Q+  a
       KOO22848.1  74 FGNrldEVEAWALATQQRPPLTLRVNRLRASPTELSASLRsvgATIAEGVPLEGSLIVEAGAGEVSALPGFYQGAFSVQDIGA 156
                      4444558888888999999***************9987665765667889986665555556677999999999999999766 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 1.9
                      E--TTS..TTHHHHHHH-SS--B-TT-TTE CS
  Methyltr_RsmF_N  33 RvNtlKisveeleklseefelepvpwceeG 62 
                      R  t+  +v+++ + ++  e+e+vp  e+G
       KOO22848.1 310 RAETTE-RVAAFLRRHP-HEFERVPVEEDG 337
                      555555.5667777777.889999999888 PP

>> Methyltransf_15  RNA cap guanine-N2 methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   5.7e-05      0.13       3      86 ..     170     260 ..     168     272 .. 0.79

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 5.7e-05
  Methyltransf_15   3 vilDlfsGaGGnviqfalv...fekviaieinleklacaqhNaevYgvsdkitlvlgdvfe..llaklkleki...kvdlvflSpPwGGpsY 86 
                      + lDl++  GG++ ++a+      ++i++e  ++k a++ + +   g s  + +v +d  +  +l++l + ++     d+v++  P+ G++ 
       KOO22848.1 170 ITLDLCAAPGGKTAHLAELmgdRGEIISVELHERKAALVRETCARLGLS-CVRVVAADASNatVLRELLSMHAgprLADCVVVDAPCSGMGT 260
                      689**************99655458*****************9999874.4555555555444666666555555579********999865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (379 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       359  (0.0200234); expected 358.6 (0.02)
Passed bias filter:                      304  (0.0169558); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.46u 0.22s 00:00:00.68 Elapsed: 00:00:00.38
# Mc/sec: 3010.29
//
Query:       KOO22849.1  [L=122]
Description: hypothetical protein Ctob_011007 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (122 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       279  (0.0155614); expected 358.6 (0.02)
Passed bias filter:                      245  (0.013665); expected 358.6 (0.02)
Passed Vit filter:                         7  (0.000390429); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.25s 00:00:00.60 Elapsed: 00:00:00.39
# Mc/sec: 934.41
//
Query:       KOO22850.1  [L=433]
Description: hypothetical protein Ctob_011013 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.3e-36  125.7   0.0    8.1e-36  123.9   0.0    1.7  1  DUF616    Protein of unknown function (DUF616)


Domain annotation for each model (and alignments):
>> DUF616  Protein of unknown function (DUF616)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  123.9   0.0   4.5e-40   8.1e-36      16     290 ..      88     385 ..      81     401 .. 0.81

  Alignments for each domain:
  == domain 1  score: 123.9 bits;  conditional E-value: 4.5e-40
      DUF616  16 kessFgGkqsleeReesfkik..esmkvhCgFvkgakgsestGfdisekdrkemekckvvvasaiFgnsDklrqPkn..isea.skknvcfvmfvDeet 109
                 +  +FgG    + R+    +   ++  ++CgF+++      + fd         ++c++v  +aiF+++D+l qP++  + +a  ++  cf++fvD+++
  KOO22850.1  88 RGGTFGGASEDDARNAALALDpsATDALPCGFLRA------SSFDAV-VALGLASHCEIVTLTAIFDGYDRLIQPTDeaLRRAdPEELKCFFAFVDQQS 179
                 5668999999999999988874367789****977......556643.34556789********************9775544156678********** PP

      DUF616 110 lkalkkegkvldes....................kkvGlWrivvv..knlpykdarrnGkvpklllhRlfpnarysiWiDsklqlvvdPllilerflw. 185
                  + + ++ k   ++                    +kvG+W++ ++  + lp++ +rrn +vpk+l+hRlfp+a+y++WiDskl+l++ P l+  +fl  
  KOO22850.1 180 YDLVVHDAKSAGTQlaittgttgaaaadadaarlTKVGVWQLALLdgSALPFRSSRRNSRVPKMLAHRLFPRAHYALWIDSKLRLHQPPALLRRMFLGg 278
                 99998888777666677788899999999999999*********98889****************************************9999999953 PP

      DUF616 186 .rknsefaiskhykrvsvyeeaeankrlkky.dk...esideqlefYkkeGl.kkfsesklpitsdvpegsvivre.htplsnLfsClwfnevdrftsR 277
                  r  + fa  +  +r ++ ee + + ++k   d    +++  q + Y+ e     + ++ +       egs+++++  +p+ n + C wfne  r   R
  KOO22850.1 279 eRGGAVFAAFRNLRRDHIDEERDWVWKHKCAqDVarcAELFGQWAAYEGEQTvPSWAQDTV-----AIEGSLLLQNlRAPVHNALFCNWFNEYLRHGER 372
                 3777899999999999999998876665554333111456667788876654155666663.....46999999874689******************* PP

      DUF616 278 DqlsFayvrdklk 290
                 Dq++ +yv++++ 
  KOO22850.1 373 DQMAISYVLHRMG 385
                 **********997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (433 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       305  (0.0170115); expected 358.6 (0.02)
Passed bias filter:                      237  (0.0132188); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.25s 00:00:00.72 Elapsed: 00:00:00.39
# Mc/sec: 3299.64
//
Query:       KOO22851.1  [L=557]
Description: hypothetical protein Ctob_011011 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.1e-09   38.7   0.0    3.4e-09   37.0   0.0    1.9  1  EF-hand_7        EF-hand domain pair
    3.4e-09   35.9   0.0    6.3e-05   22.6   0.0    2.7  2  EF-hand_6        EF-hand domain
    1.7e-07   30.3   0.0    0.00036   19.9   0.0    2.7  2  EF-hand_1        EF hand
    2.8e-05   24.4   0.0    5.7e-05   23.4   0.0    1.5  1  SPARC_Ca_bdg     Secreted protein acidic and rich in cysteine
    3.4e-05   23.6   0.0     0.0034   17.2   0.0    3.2  3  EF-hand_8        EF-hand domain pair
     0.0088   15.5   0.0        2.4    7.8   0.0    3.0  3  EF-hand_5        EF hand
  ------ inclusion threshold ------
      0.017   15.3   0.1       0.16   12.1   0.0    2.6  2  HTH_21           HTH-like domain
      0.067   13.1   0.0       0.17   11.7   0.0    1.7  1  EF-hand_10       EF hand
       0.11   11.4   0.0       0.18   10.7   0.0    1.3  1  Glyco_transf_88  Glycosyltransferase family 88


Domain annotation for each model (and alignments):
>> EF-hand_7  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.0   0.0   1.7e-12   3.4e-09       3      71 .]      79     141 ..      78     141 .. 0.93

  Alignments for each domain:
  == domain 1  score: 37.0 bits;  conditional E-value: 1.7e-12
   EF-hand_7   3 klkeaFkelDtdgdgyldkeellrllrkifqgagegsklsdeelellfkefDtdkdGvisfdEFlklyr 71 
                 +++ aF++ D ++dgyl ++el+ +lr        g ++s  ++  ++ e D + dG++++ EF++++r
  KOO22851.1  79 RVRNAFEACDFNHDGYLGYRELRTALR------MYGIDVSARAVASVLAECDANPDGKLDLVEFHQMVR 141
                 67899**********************......7888888889***********************986 PP

>> EF-hand_6  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.6   0.0   3.2e-08   6.3e-05       2      31 .]      80     108 ..      79     112 .. 0.91
   2 !   10.3   0.0   0.00027      0.54       7      28 ..     121     142 ..     116     150 .. 0.88

  Alignments for each domain:
  == domain 1  score: 22.6 bits;  conditional E-value: 3.2e-08
   EF-hand_6   2 lreaFklfDkdgdGkidaeElrkalrkalg 31 
                 +r aF++ D+++dG++ + Elr alr ++g
  KOO22851.1  80 VRNAFEACDFNHDGYLGYRELRTALR-MYG 108
                 789***********************.554 PP

  == domain 2  score: 10.3 bits;  conditional E-value: 0.00027
   EF-hand_6   7 klfDkdgdGkidaeElrkalrk 28 
                  + D + dGk+d  E+ ++ r+
  KOO22851.1 121 AECDANPDGKLDLVEFHQMVRD 142
                 578***************9984 PP

>> EF-hand_1  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.9   0.0   1.8e-07   0.00036       2      28 ..      80     106 ..      79     107 .. 0.94
   2 !    7.7   0.0    0.0014       2.9       6      27 ..     120     141 ..     116     143 .. 0.86

  Alignments for each domain:
  == domain 1  score: 19.9 bits;  conditional E-value: 1.8e-07
                 HHHHHHHHTTTSSSEEEHHHHHHHHHH CS
   EF-hand_1   2 lkeiFrefDkDgdGkIdfeEfkellkk 28 
                 ++++F+  D ++dG++ + E++++l++
  KOO22851.1  80 VRNAFEACDFNHDGYLGYRELRTALRM 106
                 799*********************986 PP

  == domain 2  score: 7.7 bits;  conditional E-value: 0.0014
                 HHHHTTTSSSEEEHHHHHHHHH CS
   EF-hand_1   6 FrefDkDgdGkIdfeEfkellk 27 
                  +e D + dGk+d+ Ef ++++
  KOO22851.1 120 LAECDANPDGKLDLVEFHQMVR 141
                 57889999************98 PP

>> SPARC_Ca_bdg  Secreted protein acidic and rich in cysteine Ca binding region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.4   0.0   2.8e-08   5.7e-05      35     111 ..      59     137 ..      27     139 .. 0.78

  Alignments for each domain:
  == domain 1  score: 23.4 bits;  conditional E-value: 2.8e-08
  SPARC_Ca_bdg  35 ehleelekkeeeknlkeckepvawkFsklDtnsdkvlsksELap.lra.plvklehCikpflescDadkdkkislkEwc 111
                    + ++ ++k+e + ++++ + v+  F+  D n+d++l  +EL+  lr+  ++   + ++  l +cDa+ d+k++l E+ 
    KOO22851.1  59 AKDAARASKQEYTAHTAVPQRVRNAFEACDFNHDGYLGYRELRTaLRMyGIDVSARAVASVLAECDANPDGKLDLVEFH 137
                   234455666777777888899*********************852554237888999********************96 PP

>> EF-hand_8  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.9   0.0    0.0029       5.7      26      52 ..      78     104 ..      70     107 .. 0.84
   2 !   17.2   0.0   1.7e-06    0.0034       2      53 ..      92     141 ..      91     143 .. 0.91
   3 ?   -1.0   0.0      0.79   1.6e+03       6      26 ..     380     401 ..     380     404 .. 0.81

  Alignments for each domain:
  == domain 1  score: 6.9 bits;  conditional E-value: 0.0029
   EF-hand_8  26 eevdilfrefDtdgdGkisfeEFcvll 52 
                 + v+  f + D+++dG++++ E    l
  KOO22851.1  78 QRVRNAFEACDFNHDGYLGYRELRTAL 104
                 5678889999**********9987766 PP

  == domain 2  score: 17.2 bits;  conditional E-value: 1.7e-06
   EF-hand_8   2 kgkItreelrrilrilglkkglseeevdilfrefDtdgdGkisfeEFcvlle 53 
                 +g++   elr++lr+ g+   +s+ +v +++ e D + dGk+++ EF++++ 
  KOO22851.1  92 DGYLGYRELRTALRMYGID--VSARAVASVLAECDANPDGKLDLVEFHQMVR 141
                 67777789*****999999..****************************987 PP

  == domain 3  score: -1.0 bits;  conditional E-value: 0.79
   EF-hand_8   6 treelrrilrilglkk.glsee 26 
                 tr+e++  l++lgl++ ++s +
  KOO22851.1 380 TRAEFHAGLALLGLPQrTISVH 401
                 8999999999999998777766 PP

>> EF-hand_5  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.8   0.0    0.0012       2.4       4      23 ..      83     102 ..      80     104 .. 0.88
   2 ?    4.2   0.0     0.017        33       9      25 .]     124     140 ..     117     140 .. 0.88
   3 ?   -2.2   0.1       1.8   3.5e+03       2      12 ..     220     230 ..     219     230 .. 0.85

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 0.0012
                 HHHHH-SS-SSCE-HHHHHH CS
   EF-hand_5   4 tFqaiDlNgDGkIskeELkt 23 
                 +F+a D N+DG++   EL+t
  KOO22851.1  83 AFEACDFNHDGYLGYRELRT 102
                 5****************998 PP

  == domain 2  score: 4.2 bits;  conditional E-value: 0.017
                 -SS-SSCE-HHHHHHHH CS
   EF-hand_5   9 DlNgDGkIskeELktlv 25 
                 D+N DGk++  E+ ++v
  KOO22851.1 124 DANPDGKLDLVEFHQMV 140
                 999*******9998875 PP

  == domain 3  score: -2.2 bits;  conditional E-value: 1.8
                 HHHHHHH-SS- CS
   EF-hand_5   2 kdtFqaiDlNg 12 
                 kdtF + D+Ng
  KOO22851.1 220 KDTFWKGDTNG 230
                 6899999***8 PP

>> HTH_21  HTH-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   8.2e-05      0.16       9      47 ..      79     120 ..      74     124 .. 0.82
   2 ?   -0.9   0.0      0.93   1.8e+03       5      35 ..     355     385 ..     352     388 .. 0.75

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 8.2e-05
      HTH_21   9 lireife....eskgrYGyrriwaeLrreggvrvnhkrVrRlM 47 
                 ++r +fe    ++ g  Gyr ++ +Lr+  g+ v+ + V+ + 
  KOO22851.1  79 RVRNAFEacdfNHDGYLGYRELRTALRMY-GIDVSARAVASVL 120
                 566666666678999**************.8****99998765 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 0.93
      HTH_21   5 allal.ireifeeskgrYGyrriwaeLrregg 35 
                 a +a+ +r++f    +  G+r+ +++ r+e++
  KOO22851.1 355 AARAAvLRRVFRSA-PIGGARSRTHATRAEFH 385
                 55555488888866.999***99999998865 PP

>> EF-hand_10  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   8.7e-05      0.17       3      45 ..      96     138 ..      94     142 .. 0.92

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 8.7e-05
  EF-hand_10   3 sfkEvkrlLreiNievddeYAekLFkkcDkSksgrLegeEiee 45 
                  + E+++ Lr+  i+v+     ++  +cD   +g+L+  E+ +
  KOO22851.1  96 GYRELRTALRMYGIDVSARAVASVLAECDANPDGKLDLVEFHQ 138
                 699**********************************999876 PP

>> Glyco_transf_88  Glycosyltransferase family 88
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   9.3e-05      0.18     233     276 ..     117     161 ..     109     167 .. 0.88

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 9.3e-05
                      SHHHHHHHHH...T--HHHHHHHHHHHS--HHHHHHHHHHHHHHH CS
  Glyco_transf_88 233 kallkdceee.dnklslftlrkalseahddllslvdflGaekfae 276
                        +l +c+ + d+kl+l+++ + + +a++  + ++d lG+++fa 
       KOO22851.1 117 ASVLAECDANpDGKLDLVEFHQMVRDAEQRTSAYYDPLGTDEFAA 161
                      5678899876589******************************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (557 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       859  (0.0479112); expected 358.6 (0.02)
Passed bias filter:                      364  (0.0203023); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.55u 0.22s 00:00:00.77 Elapsed: 00:00:00.39
# Mc/sec: 4308.09
//
Query:       KOO22852.1  [L=163]
Description: glutathione peroxidase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.1e-23   81.0   0.0    5.5e-23   80.6   0.0    1.2  1  GSHPx     Glutathione peroxidase


Domain annotation for each model (and alignments):
>> GSHPx  Glutathione peroxidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   80.6   0.0   3.1e-27   5.5e-23      39     108 .]      40     108 ..      29     108 .. 0.94

  Alignments for each domain:
  == domain 1  score: 80.6 bits;  conditional E-value: 3.1e-27
                 HHHHHHHHHHHGGGTEEEEEEEE-TTTT---S-GGGHHHTSSHTTT-SSEEB--BBSSSTTB-HHHHHHH CS
       GSHPx  39 ykeleelqkrykdkglvilgfPCnqfgkqepgsdeeikkfrqgkyevtfellekievnGekedplykflk 108
                  +el++l+++++++g+v+l+fPCnqfg qepgs +ei+ f+ +  +vtf+++ek+evnG   +p+yk+lk
  KOO22852.1  40 GHELQHLYSKLAPEGFVVLAFPCNQFGGQEPGSPSEIRAFADS-KGVTFPIFEKVEVNGPRTHPVYKYLK 108
                 579*************************************998.59**********************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (163 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       276  (0.0153941); expected 358.6 (0.02)
Passed bias filter:                      273  (0.0152267); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.21s 00:00:00.61 Elapsed: 00:00:00.37
# Mc/sec: 1315.13
//
Query:       KOO22853.1  [L=135]
Description: thioredoxin h-type [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.6e-17   62.2   0.0    4.4e-17   61.9   0.0    1.1  1  Thioredoxin    Thioredoxin
    0.00084   18.8   0.0    0.00094   18.6   0.0    1.1  1  OST3_OST6      OST3 / OST6 family, transporter family
     0.0032   17.9   0.0      0.008   16.6   0.0    1.5  1  Thioredoxin_2  Thioredoxin-like domain
  ------ inclusion threshold ------
       0.02   15.2   0.0      0.064   13.6   0.0    1.7  1  Thioredoxin_8  Thioredoxin-like
      0.042   14.0   0.0      0.064   13.4   0.0    1.2  1  Thioredoxin_4  Thioredoxin
      0.051   13.5   0.0       0.06   13.3   0.0    1.1  1  AhpC-TSA       AhpC/TSA family
       0.06   13.5   0.1        0.2   11.8   0.1    1.9  2  Thioredoxin_7  Thioredoxin-like


Domain annotation for each model (and alignments):
>> Thioredoxin  Thioredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.9   0.0   1.7e-20   4.4e-17      18      95 ..      24      99 ..      10     107 .. 0.91

  Alignments for each domain:
  == domain 1  score: 61.9 bits;  conditional E-value: 1.7e-20
                 SSEEEEEEE-TTSHHHHCHHHHHHHHHHHCTTTSEEEEEETTTSHHHHHHTT-SSSSEEEEEETTEEEEEEESS-HHH CS
  Thioredoxin 18 kklvlveFyApwCghCkalaPeleklaeelkdkvklakvdvdenedlakkyevegiPtlklfkngkevkkyegareke 95
                 +  v+veF A wCg C+++a  +ekl +el+ +  ++ vdvd +++l++ ++v+ +P ++lf++++  ++++g++  +
   KOO22853.1 24 NGVVVVEFSARWCGGCRKFAAPYEKLIKELS-TTSFCAVDVDRSPELVASFSVSELPLFVLFRESEVFDNLVGGKL-T 99
                 6789***************************.9***********************************99999875.4 PP

>> OST3_OST6  OST3 / OST6 family, transporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.6   0.0   3.7e-07   0.00094      38     105 ..      32      87 ..      15     108 .. 0.86

  Alignments for each domain:
  == domain 1  score: 18.6 bits;  conditional E-value: 3.7e-07
   OST3_OST6  38 TatspqfkCelCrefepefelvakswrkdekskskklfFakvdfdegkdvFqklglnsaPhlllfppk 105
                  a      C  Cr+f+  +e++ k   ++         F+ vd+d+++++++++ ++++P ++lf  +
  KOO22853.1  32 SAR----WCGGCRKFAAPYEKLIKELSTT--------SFCAVDVDRSPELVASFSVSELPLFVLFRES 87 
                 444....6*****************9999........4***************************875 PP

>> Thioredoxin_2  Thioredoxin-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   0.0   3.1e-06     0.008       6      98 ..      25      95 ..      20      99 .. 0.82

  Alignments for each domain:
  == domain 1  score: 16.6 bits;  conditional E-value: 3.1e-06
  Thioredoxin_2  6 kpvlvvftdpdCpyCkklkkelkelddvtvrvllfplkpsfepkavaiwcakekkkafkdieenvelarkygvrgtPtivfldgkeivarlpG 98
                     v+v f++ +C+ C+k+ +  ++l           +k+ + + + a++ ++++           el+ ++ v+++P +v++ ++e++++l+G
     KOO22853.1 25 GVVVVEFSARWCGGCRKFAAPYEKL-----------IKELSTTSFCAVDVDRSP-----------ELVASFSVSELPLFVLFRESEVFDNLVG 95
                   568999*******************...........555566677777777776...........4889999*****9998888878888877 PP

>> Thioredoxin_8  Thioredoxin-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.0   2.5e-05     0.064       3      48 ..      26      68 ..      24      88 .. 0.82

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 2.5e-05
                   EEEEEE--SSSHHHHHHHHHHHHHHHHHHHTTSEEEEEEE-SS-HH CS
  Thioredoxin_8  3 vvlLyfgaswcppckaftpklkelyeklkkkkkveivyvsldkkee 48
                   vv++ f+a wc  c++f     +l ++l+      + +v +d++ e
     KOO22853.1 26 VVVVEFSARWCGGCRKFAAPYEKLIKELS---TTSFCAVDVDRSPE 68
                   899*********************99997...88888888888744 PP

>> Thioredoxin_4  Thioredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.0   2.5e-05     0.064       8      41 ..      19      52 ..      14      58 .. 0.90

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 2.5e-05
                   ES-TT-SEEEEEEE-TT-HHHHHHHHHHHHHHHH CS
  Thioredoxin_4  8 iGnpdApvtvieyedlrCphCakfeeevekllee 41
                    G+ +  v+v+e++   C  C+kf+  +ekl++e
     KOO22853.1 19 AGDARNGVVVVEFSARWCGGCRKFAAPYEKLIKE 52
                   6888999**********************99987 PP

>> AhpC-TSA  AhpC/TSA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.0   2.4e-05      0.06      22      71 ..      21      67 ..       8      93 .. 0.77

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 2.4e-05
                HHTTSEEEEEEESTST-CCHHHHHHHHHHCHHHCCCTTEEEEEEESSSCH CS
    AhpC-TSA 22 dykgkpvvlffypkdwcpvCttelpalaklyeefkergvevigvsvdspe 71
                d ++ +vv+ f ++ wc +C++ +  ++kl++e+        +v vd   
  KOO22853.1 21 DARNGVVVVEFSAR-WCGGCRKFAAPYEKLIKELS--TTSFCAVDVDRSP 67
                55555777777777.******************98..5566666666555 PP

>> Thioredoxin_7  Thioredoxin-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.1   7.9e-05       0.2       6      37 ..       9      44 ..       5      86 .. 0.75
   2 ?   -0.3   0.0      0.48   1.2e+03      16      31 ..      76      91 ..      62     112 .. 0.71

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 7.9e-05
                   HHHHHHHHH....HHT--EEEEE--TT-HHHHHHHH CS
  Thioredoxin_7  6 ldealakaa....ergkpvlvffgaswcftCqaler 37
                   l++ala  +    +r+  v v f+a+wc+ C++++ 
     KOO22853.1  9 LEAALAHVRaagdARNGVVVVEFSARWCGGCRKFAA 44
                   555554444000055666899***********9975 PP

  == domain 2  score: -0.3 bits;  conditional E-value: 0.48
                   HT--EEEEE--TT-HH CS
  Thioredoxin_7 16 rgkpvlvffgaswcft 31
                   ++ p++v f+ s+ f+
     KOO22853.1 76 SELPLFVLFRESEVFD 91
                   5668888888887776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (135 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       329  (0.0183502); expected 358.6 (0.02)
Passed bias filter:                      290  (0.0161749); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.36u 0.26s 00:00:00.62 Elapsed: 00:00:00.39
# Mc/sec: 1030.23
//
Query:       KOO22854.1  [L=323]
Description: hypothetical protein Ctob_011012 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (323 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2239  (0.124881); expected 358.6 (0.02)
Passed bias filter:                      520  (0.0290033); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.54u 0.27s 00:00:00.81 Elapsed: 00:00:00.43
# Mc/sec: 2241.10
//
Query:       KOO22855.1  [L=189]
Description: hypothetical protein Ctob_011014 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (189 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       207  (0.0115455); expected 358.6 (0.02)
Passed bias filter:                      185  (0.0103185); expected 358.6 (0.02)
Passed Vit filter:                         9  (0.00050198); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.26s 00:00:00.63 Elapsed: 00:00:00.41
# Mc/sec: 1389.72
//
Query:       KOO22856.1  [L=364]
Description: abhydrolase domain-containing protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.1e-15   56.1   0.0    6.9e-07   28.8   0.0    2.2  2  Hydrolase_4    Serine aminopeptidase, S33
    1.8e-12   47.2   0.0    2.6e-12   46.7   0.0    1.2  1  Peptidase_S9   Prolyl oligopeptidase family
    4.9e-07   30.6   2.8     0.0001   23.0   2.8    2.3  1  Abhydrolase_6  Alpha/beta hydrolase family
    4.2e-06   26.6   0.1     0.0019   17.9   0.0    2.2  2  Abhydrolase_1  alpha/beta hydrolase fold
     0.0025   17.6   0.0       0.48   10.2   0.0    2.1  2  Abhydrolase_2  Phospholipase/Carboxylesterase
      0.004   17.1   0.0        1.3    8.9   0.0    2.2  2  BAAT_C         BAAT / Acyl-CoA thioester hydrolase C terminal
  ------ inclusion threshold ------
      0.016   14.6   0.4        0.1   11.9   0.4    1.9  2  LIP            Secretory lipase
      0.047   13.5   0.1      0.086   12.7   0.1    1.4  1  Abhydrolase_3  alpha/beta hydrolase fold
      0.087   11.8   0.1       0.13   11.2   0.1    1.1  1  Asp2           Accessory Sec system GspB-transporter
      0.088   12.5   0.0       0.13   12.0   0.0    1.3  1  FSH1           Serine hydrolase (FSH1)
        0.1   11.6   0.1       0.15   11.0   0.1    1.1  1  DUF818         Chlamydia CHLPS protein (DUF818)
       0.11   12.1   0.0        0.2   11.2   0.0    1.4  1  Peptidase_S15  X-Pro dipeptidyl-peptidase (S15 family)
       0.11   12.0   0.0       0.37   10.3   0.0    1.8  1  DLH            Dienelactone hydrolase family
       0.14   11.7   0.0       0.23   11.0   0.0    1.3  1  DUF3089        Protein of unknown function (DUF3089)


Domain annotation for each model (and alignments):
>> Hydrolase_4  Serine aminopeptidase, S33
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.8   0.0   5.4e-10   6.9e-07       5     113 ..      83     188 ..      79     210 .. 0.73
   2 !   25.3   0.0   6.3e-09     8e-06     186     237 ..     223     275 ..     220     277 .. 0.90

  Alignments for each domain:
  == domain 1  score: 28.8 bits;  conditional E-value: 5.4e-10
  Hydrolase_4   5 avvvlvHGlaehsgryaelaeaL.aaqGfavyalDhrGhGrsegkrghvpsfddyvdDlaafvekvkeehpel..plfllGhSmGGliallyllrypd 99 
                   +v+ +H  a  +g +  ++ +L a+ +++v+a+D+ G+G   g+  + + +     D++a+++ ++++  ++  +++l+G+S G++ +l ++++++ 
   KOO22856.1  83 MTVLWSHANAMDCGEMYFFFIELaARLNVNVAAYDYSGYGAATGQPTESNAY----SDARAAFDYLVSTGIDAetQIILYGQSIGSAPTLYLATKRKY 176
                  5666666666666655554444515669**************8888865555....56666666666554444449*************999999988 PP

  Hydrolase_4 100 kvaglilsaPalki 113
                    a++il  P l+ 
   KOO22856.1 177 --AAVILHTPILSG 188
                  ..999999998864 PP

  == domain 2  score: 25.3 bits;  conditional E-value: 6.3e-09
  Hydrolase_4 186 raakitlPllllhGeaDkvvdpeasrelyerlgsk.dktlklypglyHellnE 237
                  r  ++++P+ll+hG+aD+ v+++ s  lyerl+ + + +  +++g+ He + +
   KOO22856.1 223 RIRRVSAPVLLIHGTADRTVHYSHSLTLYERLPPQhRREPYIIEGAGHENIVD 275
                  667899****************************988999********97765 PP

>> Peptidase_S9  Prolyl oligopeptidase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.7   0.0     2e-15   2.6e-12      40     205 ..     129     289 ..     103     295 .. 0.81

  Alignments for each domain:
  == domain 1  score: 46.7 bits;  conditional E-value: 2e-15
                   GGHHHHHHHHHHHHHHHHTTS--GGGEEEEEETHHHHHHHHHHHH-GGG-SEEEEESE---CCCHHCSTTSTHHHCCCC--TTTCHHHHHHHHHH-C CS
  Peptidase_S9  40 lgqnefdDfiaaaealakegyvdserlaitGgSyGGyltgaalnqrpdlFkaavaevpvvdvlrydsdtdllteeymewgnpeeneegykelspysp 136
                   + +n ++D  aa ++l+++g+  +++++++G S G   t+ +++  +++++a++ + p++  lr+   +    +  + w+   + +  y  + p  +
    KOO22856.1 129 TESNAYSDARAAFDYLVSTGIDAETQIILYGQSIGSAPTLYLAT--KRKYAAVILHTPILSGLRFLIPP---PPGLCTWQGCCSPRCVYAPCDPFPN 220
                   56899***************************************..999****************9995...4455555444456899999999999 PP

                   GGG--.---EEEEEEETT-SSS-THHHHHHHHHHH--S-SEEEEEETTS-SSTTSSHHHHHHHHHHHHHH CS
  Peptidase_S9 137 ldnvk.aypplLlihGlaDdrvppaealklvaaLqkkgknvlllifpdegHgvgkprakveelarllaFl 205
                    ++++ +++p+LlihG+aD  v+++++l+l+++L  ++   +  i  ++gH    + +    ++r+ aFl
    KOO22856.1 221 FKRIRrVSAPVLLIHGTADRTVHYSHSLTLYERLPPQH-RREPYIIEGAGHENIVDYDVDGYFRRVQAFL 289
                   999999****************************8433.3344556677774443333335555555555 PP

>> Abhydrolase_6  Alpha/beta hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.0   2.8   8.2e-08    0.0001      11     207 ..      96     270 ..      85     284 .. 0.64

  Alignments for each domain:
  == domain 1  score: 23.0 bits;  conditional E-value: 8.2e-08
                    ...GCHHHHHHHHCCT..CEEEEE--TTSTS-GGCS--HHHCHHHHHHHCCTT......TTSEEEEEETCHHHHHHHHHHCC..EEEEES-..--- CS
  Abhydrolase_6  11 assWlvapLaallaag..vhvlapDlpGhGrsdpppldledladlaalldelaa....gggpvvlvGHSlGGalalaaaplalvvgvlldppptal 100
                    +++++  ++ + laa+  v v a+D+ G+G +++ p++ +++ d +a+ d l++       +++l G S G a        +    ++l++     
     KOO22856.1  96 GEMYF--FFIE-LAARlnVNVAAYDYSGYGAATGQPTESNAYSDARAAFDYLVStgidAETQIILYGQSIGSA-------PT----LYLAT----- 172
                    45553..3333.344446777*********899999888888888777777777666688888********99.......55....66666..... PP

                    -TTTS----TTHHHHHHTT-CCCCHCCHS-HSCCCCHHHCCCCHCHCCCGHHHHCCHHCHTTCCHHTT-TTGCEEE.CTT-CHHHHCHHCCCHSTT CS
  Abhydrolase_6 101 pagllaaalelllallallrllawlsreplprlfladedadaawrarlarlaallaglgllpaaawadlpvpllvl.ggeDplvprllerllaqag 195
                         + +++++l+ + l  l ++l   p+p++++        w+   ++ + +++++ + +  +++++ +p+l++ g++D++v+  + + l+   
     KOO22856.1 173 ----KRKYAAVILHTPILSGL-RFLI--PPPPGLCT-------WQGCCSPRCVYAPCDPFPNFKRIRRVSAPVLLIhGTADRTVH--YSHSLT-LY 251
                    ....56666666655555554.5554..35557766.......777777777777766666666777777777555457777666..445555.44 PP

                    EEET.......CE...SSS CS
  Abhydrolase_6 196 arlp.......vvlpgaGH 207
                    +rlp        +++gaGH
     KOO22856.1 252 ERLPpqhrrepYIIEGAGH 270
                    4444444444477777777 PP

>> Abhydrolase_1  alpha/beta hydrolase fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.7   0.1    0.0039         5      21      93 ..     102     173 ..      85     204 .. 0.74
   2 !   17.9   0.0   1.5e-06    0.0019     205     253 ..     222     273 ..     203     277 .. 0.85

  Alignments for each domain:
  == domain 1  score: 6.7 bits;  conditional E-value: 0.0039
                    HHHHHHHTTSEEEEEEETTSTTSSSTTTGB.CHHSHHHHHHHHHHHHHHCTT..SSEEEEEETHHHHHHHHHHHH CS
  Abhydrolase_1  21 lapaLakdgfdvillDlrGvgySspapacinddygtasvaddldrildalgd..dkltlvGhSmGGmialayaae 93 
                    +++  a+    v ++D  G+g  +  p++ n  y++   ++ +d+++    d   +++l G+S G++  l++a +
     KOO22856.1 102 FIELAARLNVNVAAYDYSGYGAATGQPTESN-AYSD--ARAAFDYLVSTGIDaeTQIILYGQSIGSAPTLYLATK 173
                    5555555588999**************9865.5665..89999988444433225777************99975 PP

  == domain 2  score: 17.9 bits;  conditional E-value: 1.5e-06
                    HCTHHHHSEEEEEEETTCSSSCH.HHHHHHHHCHTS..EEEEEEETCSSSHH CS
  Abhydrolase_1 205 relknvlaptlvisgtsDplvpp.kaledlaqllpk..krlvvisdagHlaf 253
                     +++ v+ap+l+i+gt D+ v + ++l  +++l p+   + ++i++agH  +
     KOO22856.1 222 KRIRRVSAPVLLIHGTADRTVHYsHSLTLYERLPPQhrREPYIIEGAGHENI 273
                    3356799****************99999***99999889999*******876 PP

>> Abhydrolase_2  Phospholipase/Carboxylesterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.3   0.0     0.012        15      92     130 ..     139     176 ..     126     190 .. 0.77
   2 !   10.2   0.0   0.00037      0.48     138     200 ..     210     271 ..     201     289 .. 0.78

  Alignments for each domain:
  == domain 1  score: 5.3 bits;  conditional E-value: 0.012
                    HHHHHHHHTT--GG.GEEEEEETHHHHHHHHHHHT-SS-- CS
  Abhydrolase_2  92 elidaelkkgipss.riiigGFSqGaalalylaltlpkkl 130
                    +  d+ ++ gi+++ +ii+ G S G a +lyla +   k+
     KOO22856.1 139 AAFDYLVSTGIDAEtQIILYGQSIGSAPTLYLATKR--KY 176
                    5668889999987648***************87654..44 PP

  == domain 2  score: 10.2 bits;  conditional E-value: 0.00037
                    ---TTGGGTTTTS-GGGGG-EEEEEEETT-SSS-HHHHHHHHHHHHTTS-GEEEEEETT--SS CS
  Abhydrolase_2 138 galplsqklessatavtkklpilqiHgeeDpvvplalgkaakevlkkllkkvelksyeglaHs 200
                    +++++   +++ +    +  p+l+iHg+ D +v ++++ +++e l       e  ++eg +H+
     KOO22856.1 210 CVYAPCDPFPNFKRIRRVSAPVLLIHGTADRTVHYSHSLTLYERLPPQHR-REPYIIEGAGHE 271
                    66667777775444444889**********************99976555.667777777776 PP

>> BAAT_C  BAAT / Acyl-CoA thioester hydrolase C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.9   0.0    0.0084        11       9      52 ..     140     182 ..     138     187 .. 0.81
   2 !    8.9   0.0     0.001       1.3     111     162 ..     224     271 ..     219     286 .. 0.88

  Alignments for each domain:
  == domain 1  score: 5.9 bits;  conditional E-value: 0.0084
                 HHHHHHCSTTB--SSEEEEEETHHHHHHHHHHHHSSSEEEEEEE CS
      BAAT_C   9 ainyllrhpkvkkdkigllGiSkGgelalllasflkkisavvli 52 
                 a +yl +    ++ +i l+G+S G+  +l+la++ k   av+l+
  KOO22856.1 140 AFDYLVSTGIDAETQIILYGQSIGSAPTLYLATKRK-YAAVILH 182
                 678888888888899*****************9865.4555555 PP

  == domain 2  score: 8.9 bits;  conditional E-value: 0.001
                 GGG--SEEEEEEETT-SSS-HHHHHHHHHHHHHCTT--.--EEEEETTB-S- CS
      BAAT_C 111 vekakgpillvvgedDknwpSkesaekaserLkkagkkvevqlltYpkaGHl 162
                 + + ++p+ll+ g+ D+++  ++s  ++ erL  ++++ e+ ++  ++aGH 
  KOO22856.1 224 IRRVSAPVLLIHGTADRTVHYSHSL-TLYERLPPQHRR-EPYII--EGAGHE 271
                 66889**************988887.899*****9999.99999..9****5 PP

>> LIP  Secretory lipase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.4   7.9e-05       0.1      27      89 ..     111     171 ..      94     180 .. 0.78
   2 ?    0.0   0.0      0.33   4.2e+02     216     239 ..     229     252 ..     225     256 .. 0.87

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 7.9e-05
         LIP  27 yyVvvpDyeGpkstftvgrqsgkavLdsiraalksekvtgiksdakvalwGYSgGslAsawAa 89 
                 + V   Dy G ++  + + +s        raa +   +tgi  ++++ l+G S Gs  + + a
  KOO22856.1 111 VNVAAYDYSGYGAATGQPTES--NAYSDARAAFDYLVSTGIDAETQIILYGQSIGSAPTLYLA 171
                 567788999999987655554..344557***************************9887755 PP

  == domain 2  score: 0.0 bits;  conditional E-value: 0.33
         LIP 216 iPvlvyhgvidelipikdakklak 239
                  Pvl++hg+ d  + ++ +  l++
  KOO22856.1 229 APVLLIHGTADRTVHYSHSLTLYE 252
                 6***********999988877775 PP

>> Abhydrolase_3  alpha/beta hydrolase fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.1   6.7e-05     0.086      20      91 ..     101     173 ..      91     194 .. 0.76

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 6.7e-05
                    HHHHHHHHHTSEEEEEE--...-TTTS-TT.HHHHHHHHHHHHHHHTHHHHTETTC.EEEEEEETHHHHHHHHHHHH CS
  Abhydrolase_3  20 lcrelakelgavvvsvdYr...lAPehpfP.aavedalaalrwlaeqawelgadps.rivlaGdSaGGnlaaavalr 91 
                    ++ ela++l++ v + dY     A  +p    a+ da aa+ +l+++    g+d++ +i+l G+S G   ++++a +
     KOO22856.1 101 FFIELAARLNVNVAAYDYSgygAATGQPTEsNAYSDARAAFDYLVST----GIDAEtQIILYGQSIGSAPTLYLATK 173
                    67899***********99744356666664269*************9....7997669*********8766666643 PP

>> Asp2  Accessory Sec system GspB-transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.1    0.0001      0.13     354     388 ..     152     186 ..     142     188 .. 0.92

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.0001
        Asp2 354 eeqlilsGlSMGtfgalyYgaklnphaivvgKPlv 388
                 e q+il G S+G+ ++ly ++k + +a+++  P++
  KOO22856.1 152 ETQIILYGQSIGSAPTLYLATKRKYAAVILHTPIL 186
                 679***************************99996 PP

>> FSH1  Serine hydrolase (FSH1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   9.8e-05      0.13     156     190 ..     223     257 ..     125     270 .. 0.82

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 9.8e-05
        FSH1 156 eedkiqtptLhvlGelDtvvdeerseaLaeafkns 190
                   ++++ p+L ++G++D  v  + s +L+e    +
  KOO22856.1 223 RIRRVSAPVLLIHGTADRTVHYSHSLTLYERLPPQ 257
                 456789************************98775 PP

>> DUF818  Chlamydia CHLPS protein (DUF818)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.1   0.00012      0.15     163     226 ..     102     164 ..      87     171 .. 0.89

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00012
      DUF818 163 lkrlakllganilvfnYPGvmsskGeitrenlakayqaCvrYLrDkeqGPkak.eiiayGYsLGt 226
                 + +la +l+ n+  ++Y G   ++G+ t  n  +  +a   YL    +G +a+ +ii yG s+G+
  KOO22856.1 102 FIELAARLNVNVAAYDYSGYGAATGQPTESNAYSDARAAFDYLV--STGIDAEtQIILYGQSIGS 164
                 568999*************************************7..578777449********97 PP

>> Peptidase_S15  X-Pro dipeptidyl-peptidase (S15 family)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   0.00016       0.2     223     259 ..     223     262 ..     218     272 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00016
                    HHCT--S-EEEEEECCSSTTC.CHHHHHHHHHCCTT-..E CS
  Peptidase_S15 223 dadkvkapvllvgGwnDwnvk.ngaiklyealkapgv..k 259
                    ++++v apvll++G +D +v   +++ lye+l+ ++    
     KOO22856.1 223 RIRRVSAPVLLIHGTADRTVHySHSLTLYERLPPQHRreP 262
                    6799****************************98876553 PP

>> DLH  Dienelactone hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.0   0.00029      0.37      73     170 ..     129     254 ..     117     281 .. 0.83

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.00029
         DLH  73 vaeekvlddlkaavaylksvpevstkkvgvvGfCmGGalalllaaevpevdaavafYG...............................lspekeleea 140
                 + e++  +d++aa +yl s++   + ++ + G  +G a +l+la++ +   aav+ +                                  p ++ +++
  KOO22856.1 129 T-ESNAYSDARAAFDYLVSTGIDAETQIILYGQSIGSAPTLYLATKRK--YAAVILHTpilsglrflippppglctwqgccsprcvyapCDPFPNFKRI 224
                 4.6677888889999999999999999999999999999999999994..455555655999999999999999999999999999998899999**** PP

         DLH 141 akikapilalfgeeDefipadevekleeal 170
                 ++++ap+l ++g++D  +  ++  +l e l
  KOO22856.1 225 RRVSAPVLLIHGTADRTVHYSHSLTLYERL 254
                 ******************999877777766 PP

>> DUF3089  Protein of unknown function (DUF3089)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   0.00018      0.23      69     114 ..     127     173 ..     111     185 .. 0.85

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00018
     DUF3089  69 ekaldlAyaDvaaAfeaylake.nkgrPiiLaGhsQGallllrLlke 114
                 +   + Ay+D +aAf++ +++  +++  iiL G s G++ +l L ++
  KOO22856.1 127 QPTESNAYSDARAAFDYLVSTGiDAETQIILYGQSIGSAPTLYLATK 173
                 556678***********99998899*************988888665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (364 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       360  (0.0200792); expected 358.6 (0.02)
Passed bias filter:                      287  (0.0160076); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                        14  (0.000780858); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              14  [number of targets reported over threshold]
# CPU time: 0.51u 0.28s 00:00:00.79 Elapsed: 00:00:00.44
# Mc/sec: 2500.03
//
Query:       KOO22857.1  [L=220]
Description: hypothetical protein Ctob_006782 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.5e-09   38.1   2.0    2.9e-09   37.3   2.0    1.4  1  EF-hand_7    EF-hand domain pair
      8e-08   31.6   0.5    0.00016   21.3   0.0    2.7  3  EF-hand_6    EF-hand domain
    2.3e-07   29.9   2.0     0.0035   16.8   0.0    2.4  2  EF-hand_1    EF hand
      4e-05   23.4   0.2     0.0001   22.1   0.1    1.8  1  EF-hand_8    EF-hand domain pair
    4.3e-05   22.8   0.3     0.0039   16.6   0.0    2.6  2  EF-hand_5    EF hand
  ------ inclusion threshold ------
      0.012   15.4   0.0      0.021   14.7   0.0    1.4  1  Sigma54_CBD  Sigma-54 factor, core binding domain
      0.015   14.9   3.3      0.022   14.3   3.3    1.2  1  DDRGK        DDRGK domain
      0.016   16.0   0.0      0.026   15.4   0.0    1.3  1  EF-hand_11   EF-hand domain


Domain annotation for each model (and alignments):
>> EF-hand_7  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.3   2.0   1.3e-12   2.9e-09       1      67 [.     109     169 ..     109     172 .. 0.96

  Alignments for each domain:
  == domain 1  score: 37.3 bits;  conditional E-value: 1.3e-12
   EF-hand_7   1 eeklkeaFkelDtdgdgyldkeellrllrkifqgagegsklsdeelellfkefDtdkdGvisfdEFl 67 
                 +++++ aF+  D d++g+l+++e++r+l         + +++d +l+ll+ e+D d+d+ is++EF+
  KOO22857.1 109 FTDMYKAFQYCDLDRSGRLSRSEIRRALD------LWNIPIDDRQLDLLLGEIDEDGDDGISYEEFV 169
                 57899***********************9......9******************************8 PP

>> EF-hand_6  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.7   0.0       7.8   1.8e+04      11      17 ..       7      13 ..       5      13 .. 0.82
   2 !   21.3   0.0   7.1e-08   0.00016       1      27 [.     111     137 ..     111     140 .. 0.93
   3 !    7.7   0.2    0.0017       3.8       8      24 ..     154     170 ..     147     179 .. 0.88

  Alignments for each domain:
  == domain 1  score: -3.7 bits;  conditional E-value: 7.8
   EF-hand_6 11 kdgdGki 17
                +d +G+i
  KOO22857.1  7 RDPSGFI 13
                7999998 PP

  == domain 2  score: 21.3 bits;  conditional E-value: 7.1e-08
   EF-hand_6   1 elreaFklfDkdgdGkidaeElrkalr 27 
                 ++++aF++ D d++G ++++E+r+al 
  KOO22857.1 111 DMYKAFQYCDLDRSGRLSRSEIRRALD 137
                 5899*********************96 PP

  == domain 3  score: 7.7 bits;  conditional E-value: 0.0017
   EF-hand_6   8 lfDkdgdGkidaeElrk 24 
                 ++D dgd  i++eE+++
  KOO22857.1 154 EIDEDGDDGISYEEFVD 170
                 79*************86 PP

>> EF-hand_1  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   0.0   1.6e-06    0.0035       3      26 ..     113     136 ..     111     138 .. 0.91
   2 !   11.5   1.3   7.4e-05      0.17       7      23 ..     153     169 ..     147     170 .. 0.86

  Alignments for each domain:
  == domain 1  score: 16.8 bits;  conditional E-value: 1.6e-06
                 HHHHHHHTTTSSSEEEHHHHHHHH CS
   EF-hand_1   3 keiFrefDkDgdGkIdfeEfkell 26 
                  ++F+  D D++G+++++E +++l
  KOO22857.1 113 YKAFQYCDLDRSGRLSRSEIRRAL 136
                 689******************997 PP

  == domain 2  score: 11.5 bits;  conditional E-value: 7.4e-05
                 HHHTTTSSSEEEHHHHH CS
   EF-hand_1   7 refDkDgdGkIdfeEfk 23 
                  e+D Dgd  I++eEf+
  KOO22857.1 153 GEIDEDGDDGISYEEFV 169
                 589*************8 PP

>> EF-hand_8  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.1   0.1   4.5e-08    0.0001       2      51 ..     124     171 ..     123     175 .. 0.92

  Alignments for each domain:
  == domain 1  score: 22.1 bits;  conditional E-value: 4.5e-08
   EF-hand_8   2 kgkItreelrrilrilglkkglseeevdilfrefDtdgdGkisfeEFcvl 51 
                 +g ++r e rr+l +  ++  + + ++d l+ e+D+dgd  is+eEF++ 
  KOO22857.1 124 SGRLSRSEIRRALDLWNIP--IDDRQLDLLLGEIDEDGDDGISYEEFVDK 171
                 6999*********998999..**************************985 PP

>> EF-hand_5  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   0.0   1.8e-06    0.0039       3      23 ..     114     134 ..     112     136 .. 0.88
   2 ?    3.0   1.0     0.036        82       6      21 ..     153     168 ..     148     173 .. 0.83

  Alignments for each domain:
  == domain 1  score: 16.6 bits;  conditional E-value: 1.8e-06
                 HHHHHH-SS-SSCE-HHHHHH CS
   EF-hand_5   3 dtFqaiDlNgDGkIskeELkt 23 
                 ++Fq  Dl+++G++s++E ++
  KOO22857.1 114 KAFQYCDLDRSGRLSRSEIRR 134
                 56****************987 PP

  == domain 2  score: 3.0 bits;  conditional E-value: 0.036
                 HHH-SS-SSCE-HHHH CS
   EF-hand_5   6 qaiDlNgDGkIskeEL 21 
                  +iD +gD  Is eE+
  KOO22857.1 153 GEIDEDGDDGISYEEF 168
                 579*****99999999 PP

>> Sigma54_CBD  Sigma-54 factor, core binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.7   0.0   9.5e-06     0.021      29      91 ..     144     206 ..     128     219 .. 0.80

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 9.5e-06
  Sigma54_CBD  29 ereiaeylienLdedGYleesleeiaeel...eeeeveavlkliqsldPaGvgArdlqEcLllQlk 91 
                  + + ++ l++++dedG    s ee++++l   + +++    + +qsl+ +Gv+A    E L++Qlk
   KOO22857.1 144 DDRQLDLLLGEIDEDGDDGISYEEFVDKLargTVANAAMGKRGLQSLEAMGVAAD---EVLAIQLK 206
                  5566799**********************76666666666799**********95...88999996 PP

>> DDRGK  DDRGK domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   3.3   9.9e-06     0.022      45     116 ..      51     121 ..      44     131 .. 0.85

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 9.9e-06
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHHHHHHHHHHH-SEE-H CS
       DDRGK  45 keekeeekekkkeeeerkkeeekerkeqeeyeklksefvveeegtekesaeeeeklleefinyikekKvvll 116
                 ke +e e++ ++e+ee+kk+   ++ke + y+  +++f+ e+e ++   a e + l+++f++  k   ++ l
  KOO22857.1  51 KELREIEAATRREKEEAKKKLAPRKKEAKVYKTHEEKFQAEKETKMLLAAAE-SGLNSRFTDMYKAFQYCDL 121
                 45666778888999999999999********************999998888.669**99998887766665 PP

>> EF-hand_11  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.4   0.0   1.2e-05     0.026       7      93 ..      97     183 ..      90     193 .. 0.87

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 1.2e-05
                 HHHHHHHHHHHSHHHHHHHHHHH-TT-SSEE-HHHHHHHHHHHT----HHHHHHHHHTS-B-TTS-EEHHHHHHHHCS-.------- CS
  EF-hand_11   7 ilarlqkavashyhaivqefenfdtlksntvsreefraictrrvqiltdeqfdrlwselpvnakgrlkyqdflsklsiervaatpma 93 
                 +la  +  + s +  + + f+  d  +s  +sr e+r   +     + d q+d l  e+  +    + y++f+ kl+   va + m 
  KOO22857.1  97 LLAAAESGLNSRFTDMYKAFQYCDLDRSGRLSRSEIRRALDLWNIPIDDRQLDLLLGEIDEDGDDGISYEEFVDKLARGTVANAAMG 183
                 66777788899999999*******************987776666679*****************************9999888775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (220 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1231  (0.0686597); expected 358.6 (0.02)
Passed bias filter:                      598  (0.0333538); expected 358.6 (0.02)
Passed Vit filter:                        61  (0.00340231); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.47u 0.27s 00:00:00.74 Elapsed: 00:00:00.43
# Mc/sec: 1540.59
//
Query:       KOO22858.1  [L=161]
Description: hypothetical protein Ctob_006787 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (161 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       296  (0.0165096); expected 358.6 (0.02)
Passed bias filter:                      263  (0.014669); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.29s 00:00:00.65 Elapsed: 00:00:00.42
# Mc/sec: 1144.62
//
Query:       KOO22859.1  [L=443]
Description: hypothetical protein Ctob_006786 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00059   19.6   0.1      0.091   12.7   0.0    2.7  2  EF-hand_6  EF-hand domain
  ------ inclusion threshold ------
      0.022   14.3   0.0        9.2    6.1   0.0    2.7  2  EF-hand_1  EF hand
       0.29   11.6   2.6        5.4    7.5   0.1    3.3  2  EF-hand_7  EF-hand domain pair


Domain annotation for each model (and alignments):
>> EF-hand_6  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.7   0.0   1.5e-05     0.091       2      31 .]     377     405 ..     376     408 .. 0.91
   2 !    4.1   0.0    0.0093        56      12      26 ..     409     423 ..     407     427 .. 0.86

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 1.5e-05
   EF-hand_6   2 lreaFklfDkdgdGkidaeElrkalrkalg 31 
                 lr aF++fD+ + G+i a El +al+  lg
  KOO22859.1 377 LRLAFDYFDVRRLGSIGARELHDALT-TLG 405
                 6789*********************9.565 PP

  == domain 2  score: 4.1 bits;  conditional E-value: 0.0093
   EF-hand_6  12 dgdGkidaeElrkal 26 
                 +++G id++++++a 
  KOO22859.1 409 SRTGRIDFADFVDAV 423
                 689*********986 PP

>> EF-hand_1  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.6   0.0    0.0022        13       3      28 ..     378     403 ..     376     404 .. 0.90
   2 ?    6.1   0.0    0.0015       9.2      13      27 ..     410     424 ..     408     426 .. 0.88

  Alignments for each domain:
  == domain 1  score: 5.6 bits;  conditional E-value: 0.0022
                 HHHHHHHTTTSSSEEEHHHHHHHHHH CS
   EF-hand_1   3 keiFrefDkDgdGkIdfeEfkellkk 28 
                 + +F+ fD+ + G I   E+ ++l++
  KOO22859.1 378 RLAFDYFDVRRLGSIGARELHDALTT 403
                 669********************987 PP

  == domain 2  score: 6.1 bits;  conditional E-value: 0.0015
                 SSSEEEHHHHHHHHH CS
   EF-hand_1  13 gdGkIdfeEfkellk 27 
                 ++G+Idf +f+++++
  KOO22859.1 410 RTGRIDFADFVDAVA 424
                 68**********987 PP

>> EF-hand_7  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.0   1.5    0.0028        17      19      68 ..     357     399 ..     337     402 .. 0.76
   2 ?    7.5   0.1   0.00091       5.4       4      42 ..     377     409 ..     374     424 .. 0.79

  Alignments for each domain:
  == domain 1  score: 6.0 bits;  conditional E-value: 0.0028
   EF-hand_7  19 ldkeellrllrkifqgagegsklsdeelellfkefDtdkdGvisfdEFlk 68 
                 ld++el+ +        +e+ + ++ +l+l f+ fD ++ G+i   E++ 
  KOO22859.1 357 LDRQELR-IEI------EEMLDERRASLRLAFDYFDVRRLGSIGARELHD 399
                 5556655.333......777777889999999999999999888777765 PP

  == domain 2  score: 7.5 bits;  conditional E-value: 0.00091
   EF-hand_7   4 lkeaFkelDtdgdgyldkeellrllrkifqgagegskls 42 
                 l+ aF+ +D+++ g++  +el+++l+ +      g +ls
  KOO22859.1 377 LRLAFDYFDVRRLGSIGARELHDALTTL------GASLS 409
                 6779*******************99954......44444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (443 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2235  (0.124658); expected 358.6 (0.02)
Passed bias filter:                      537  (0.0299515); expected 358.6 (0.02)
Passed Vit filter:                       148  (0.00825478); expected 17.9 (0.001)
Passed Fwd filter:                        49  (0.002733); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 1.20u 0.39s 00:00:01.59 Elapsed: 00:00:00.52
# Mc/sec: 2568.63
//
Query:       KOO22860.1  [L=623]
Description: nucleolar RNA helicase 2 isoform 2, partial [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    4.9e-39  133.9   0.0    9.8e-39  132.9   0.0    1.5  1  DEAD           DEAD/DEAH box helicase
    6.5e-24   84.4   0.0    1.2e-23   83.6   0.0    1.5  1  Helicase_C     Helicase conserved C-terminal domain
  ------ inclusion threshold ------
      0.077   12.2   0.8       0.12   11.6   0.0    1.6  2  ERCC3_RAD25_C  ERCC3/RAD25/XPB C-terminal helicase


Domain annotation for each model (and alignments):
>> DEAD  DEAD/DEAH box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  132.9   0.0   1.6e-42   9.8e-39       1     174 [.     167     340 ..     167     342 .. 0.92

  Alignments for each domain:
  == domain 1  score: 132.9 bits;  conditional E-value: 1.6e-42
                 -HHHHHHHHHHHTTCEEEEEESTTSSHHHHHHHHHHHHHHHS........TTSTS-EEEEEESSHHHHHHHHHHHHHHTTTSTSEEEEEETTSSHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx........xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD   1 tdiQaeaiplilgggdvlvaaeTGsGKTlaflipvlqivyet........kgktgpkalivePtreLaeqtlnnlkkfkkyidlrvlliiggvaardql 91 
                 ++iQa++++++  g+d++++a+TG+GKTlaf++p++++v+          +  ++p+ l+++PtreLa+q++++++++     l+  +++gg++     
  KOO22860.1 167 FPIQAACFDHLNAGKDLIGRARTGMGKTLAFALPLVEKVLALrkqtgtmrRPGRKPMGLVMAPTRELAQQVASEVQSVAPG--LESYCVYGGTPMGPSC 263
                 58*************************************9987677776666666************************96..77889*********** PP

                 HHHHTTCSEEEEEHHHHHHHHHCTSSHCTTEEEEEEETHHHHHHTTTHHHHHHHHHHSHHHCTTSTTTSEEEEEESSBSHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD  92 skldngvdivvgtpgrlddllstgklnlsqvrflVlDEadrlldqgfsdfinrilnqlpqitcdgklqrqvivlSATlpkdvk 174
                 ++l++g+d+v+gtpgr+ dl ++g l l+++ f  lDEad++ld+gf +++++il q+   t    + rq++++SATlp  v+
  KOO22860.1 264 TALRAGLDLVIGTPGRIKDLAERGVLLLDEIAFAALDEADQMLDMGFAEDMQAILGQC---TL---KGRQTCLFSATLPAWVR 340
                 **********************************************************...23...4457********97766 PP

>> Helicase_C  Helicase conserved C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   83.6   0.0     2e-27   1.2e-23      13     111 .]     394     497 ..     384     497 .. 0.88

  Alignments for each domain:
  == domain 1  score: 83.6 bits;  conditional E-value: 2e-27
                 TTTTSEEEEEESSHHHHHHHHHHHHHT..TSTEEEESTTSTHHHHHHHHHHHHTTSSSEEEESGGGTSSSTSTTESEEEESSSS.......SSHHHHHH CS
  Helicase_C  13 eeeggkilifvntidrlekvklllekk..gikvavlhgelpqnereeileqfnkgesdvLiatdvaerGidipkvnlVinfdlp.......rnvtsyiq 102
                  +++g++++f+ t+ +++  +l  +++  ++++ vlhg++pq  re+++++f++g+++vLiatdva+rG+d+  v+lV++  +p       +++++y++
  KOO22860.1 394 ASSTGRVIVFCDTKAECD--SLS-SSEalKVECKVLHGDIPQATREKVMAAFRSGRFRVLIATDVAARGLDM-IVELVVQSKPPvrrmsgrEDTETYVH 488
                 57899************7..333.222359******************************************.5**********9999887779***** PP

                 HHTTSSSTT CS
  Helicase_C 103 riGRtgRag 111
                 r+GRtgRag
  KOO22860.1 489 RSGRTGRAG 497
                 *******97 PP

>> ERCC3_RAD25_C  ERCC3/RAD25/XPB C-terminal helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   0.6      0.74   4.4e+03     211     236 ..      97     122 ..      89     133 .. 0.51
   2 ?   11.6   0.0     2e-05      0.12      52     122 ..     389     462 ..     380     484 .. 0.80

  Alignments for each domain:
  == domain 1  score: -3.4 bits;  conditional E-value: 0.74
  ERCC3_RAD25_C 211 tkeeqkellqkvlaakdeeaeeeele 236
                    + e+q++ lq+  aa de  ++e++e
     KOO22860.1  97 DDEQQQQQLQQHAAAYDEMLRREAEE 122
                    44455555555555555544444333 PP

  == domain 2  score: 11.6 bits;  conditional E-value: 2e-05
  ERCC3_RAD25_C  52 LikyhekrgDkiivfsDnvf...aLk.eyakklkkpyiyGetseaerlkilqkfkknpkvntiflskvgDtsiDl 122
                    +i +  +   ++ivf+D      +L+ + a k++ + ++G++++a r k++ +f++  ++++++   v+   +D+
     KOO22860.1 389 VIAMYASSTGRVIVFCDTKAecdSLSsSEALKVECKVLHGDIPQATREKVMAAFRSG-RFRVLIATDVAARGLDM 462
                    56777788889******8661114441357889999******************976.78999999999888887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (623 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1161  (0.0647554); expected 358.6 (0.02)
Passed bias filter:                      613  (0.0341904); expected 358.6 (0.02)
Passed Vit filter:                        72  (0.00401584); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.67u 0.27s 00:00:00.94 Elapsed: 00:00:00.42
# Mc/sec: 4499.21
//
Query:       KOO22861.1  [L=103]
Description: hypothetical protein Ctob_006784 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (103 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       349  (0.0194657); expected 358.6 (0.02)
Passed bias filter:                      297  (0.0165653); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.25s 00:00:00.60 Elapsed: 00:00:00.40
# Mc/sec: 763.28
//
Query:       KOO22862.1  [L=618]
Description: f5 8 type c domain protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.1e-81  274.1   0.6      2e-81  273.3   0.6    1.4  1  DUF4838   Domain of unknown function (DUF4838)


Domain annotation for each model (and alignments):
>> DUF4838  Domain of unknown function (DUF4838)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  273.3   0.6   1.1e-85     2e-81       2     265 .]     192     466 ..     191     466 .. 0.96

  Alignments for each domain:
  == domain 1  score: 273.3 bits;  conditional E-value: 1.1e-85
     DUF4838   2 vHtfkkll...........ppeeygekhpeyfalidgkrepeesqlCltneevvkivleeikkkldknpeakvfsvsqnDnsayCeceackaldkkygs 89 
                 vHt++++l           pp  y ++hpe+f+      + ++ qlC++n+++v +v+e+++k l ++ +a+++s+sqnDn + Ce++a ka+++k+gs
  KOO22862.1 192 VHTSYNILafpdstwqnhpPPALY-KAHPEWFWPRGAAGASTYGQLCWSNASLVAFVTEQARKILCADANATILSISQNDNGEQCEDPAEKAVNDKEGS 289
                 799999999999999999677777.********9644444478******************************************************** PP

     DUF4838  90 psgallrfvnkvaeavkeefpdkklstlAYqytrkpPkn.iklapnViirlcsiesdrseplskdksnrefkedlkeWskiaknilvwdYeinFanyla 187
                 p gall+ vn va+a+++efp++ ++tlAYq+tr +P+  +k++pnViirlc+ie+d ++pl +++ n+ f++d+++W++++k+ ++wdY++nF++y+a
  KOO22862.1 290 PIGALLNAVNAVADALADEFPHVAFDTLAYQWTRSAPTSgLKPRPNVIIRLCTIECDFAHPL-THENNAPFQKDMAAWAALSKRTYIWDYVTNFQHYVA 387
                 *************************************999**********************.9*********************************** PP

     DUF4838 188 pfpnlrviaenikfykengvrgvfaqgss.ekgsdfaelraYllakllwdpsldvdallddfldayYgaAapyvkeyld 265
                 pfpn++v+ +n++f++e+gv+gvf++g++ + g+d  +l+ Yllak lw+p+ d d+ +++fl  yY +Aa +vk+y+d
  KOO22862.1 388 PFPNWHVLVPNLRFFHEHGVQGVFEEGTYnTPGGDLVQLKDYLLAKALWNPNIDDDDATTQFLGYYYDSAAVHVKTYMD 466
                 *****************************999*********************************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (618 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       342  (0.0190752); expected 358.6 (0.02)
Passed bias filter:                      308  (0.0171789); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.52u 0.27s 00:00:00.79 Elapsed: 00:00:00.41
# Mc/sec: 4508.63
//
Query:       KOO22863.1  [L=755]
Description: polycystic kidney disease 2-like 1 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    2.8e-27   95.5  15.4    1.6e-24   86.4  18.6    2.3  2  PKD_channel  Polycystin cation channel


Domain annotation for each model (and alignments):
>> PKD_channel  Polycystin cation channel
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    3.4   0.0    0.0014        25       4      30 ..      44      70 ..      42      84 .. 0.82
   2 !   86.4  18.6   9.1e-29   1.6e-24     138     421 ..     284     571 ..     274     576 .. 0.85

  Alignments for each domain:
  == domain 1  score: 3.4 bits;  conditional E-value: 0.0014
                 STT--SHHHHHHHHTTHHHHTTTTS-B CS
  PKD_channel  4 latvtdlediykwlesvLlpaltsnkt 30
                 +++v +  diy+w + vLlp+l  ++ 
   KOO22863.1 44 FSAVRRAADIYEWGNTVLLPGLFGDMG 70
                 7889999***************88775 PP

  == domain 2  score: 86.4 bits;  conditional E-value: 9.1e-29
                  HHHHHHHHHHHHTTSS-TTEEEEEEEEEEEETTTTEEEEEEEEEE--TTSS-EEEEEEEEE------SHHHHHHHHHHHHHHHHHHHHHHHHH----- CS
  PKD_channel 138 eeslkrlaeLkeknWLDrrtravfvdftlYnadinlfcvvtllvEvpalGgvlpsvsvqsvkLlryvtklslflllievvfvvfvlyfvveeilkirk 235
                  + + +  ++Lk+ + +D+rtr++ + + l    i++    tl++E +a G  l+s sv++  L + +    +++l++  v + ++++f   e +++ +
   KOO22863.1 284 NAAEEFWNDLKRGHFIDARTRLMTITLQLKANSIGVRYRTTLIFEQSAPGAWLTSYSVETRLLSKTQ---IASMLTFANVALALIIFFCLLEGVELSN 378
                  556667799**************************************************97665433...34455556788899999*********** PP

                  ---------HHHHHHH..HHHHHHHHHHHHHHHHHHH...HHHHHHHHH-SSS----HHHHHHHHHHHHHHHHHHHHHHHGGGGG---.--------- CS
  PKD_channel 236 erasylrsvwnlldla..ivvlsvvlivlailrevla...kkllkkveaekeefldFrevaqldqllriilavlvflttlkllkvlrf.nktlslltk 327
                  +  +y+ ++wn++d a  i+ +++  ++l+ l++ +    ++ +++++ +++ + d  +v +  + ++  l + v++ + k++kv  + ++++ l+t 
   KOO22863.1 379 SVVAYFANMWNVMDWAnyIIFFFTYNGILYYLQTLTEtpeNAGCASYMCSQVGYFDDWKVMKAFSDAKTALSLCVCVQLFKVMKVCALlMPKMGLATA 476
                  **************97335555666677777777654121345677776666666666666666667778889999999999999875279******* PP

                  ------------HHHHHHHHHHHHHHHHHHSSSS-STTSSHHHHHHHHHHHHTT---HHHH.HHH-TTHHHHHHHHHHHHHHHHHHHHHHHHHHT CS
  PKD_channel 328 tlaralkdvlgfalvivilflayaqlgvllfGtqasnfsnlvksiltlfrlilgdfqytel.esgnrvLGpllllalvflvifillnlflaiind 421
                  +l++ + d+l f + ++i ++a+ +++ +  G  ++n+s  + ++l+lfr + gdf+ +e+  + +  L  ll+l + f+ +fi+l +flai+ +
   KOO22863.1 477 VLKKTALDLLFFGVTFIIAMFAFSMMLQIQLGPVMENYSSQIPAFLALFRALFGDFDINEIlTNSGNYLNALLFLGYLFVAVFIMLSMFLAILAE 571
                  *********************************************************997537889**************************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (755 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       667  (0.0372023); expected 358.6 (0.02)
Passed bias filter:                      356  (0.0198561); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.58u 0.29s 00:00:00.86 Elapsed: 00:00:00.42
# Mc/sec: 5368.57
//
Query:       KOO22864.1  [L=460]
Description: rab-like protein 6 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
     0.0006   20.0   0.0     0.0052   17.0   0.0    2.3  3  Roc       Ras of Complex, Roc, domain of DAPkinase
     0.0025   16.7   0.4       0.12   11.2   0.0    2.2  2  DLIC      Dynein light intermediate chain (DLIC)
  ------ inclusion threshold ------
      0.016   14.3   0.1       0.09   11.8   0.0    1.9  2  IIGP      Interferon-inducible GTPase (IIGP)
       0.15   11.1   0.0       0.24   10.4   0.0    1.2  1  MCM       MCM P-loop domain


Domain annotation for each model (and alignments):
>> Roc  Ras of Complex, Roc, domain of DAPkinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.0   0.0   1.2e-06    0.0052       1      63 [.      42      98 ..      42     109 .. 0.83
   2 ?   -3.2   0.0       2.1   9.3e+03      78     116 ..     134     172 ..     133     175 .. 0.68
   3 ?   -0.1   0.0      0.23     1e+03      59      95 ..     229     266 ..     192     278 .. 0.73

  Alignments for each domain:
  == domain 1  score: 17.0 bits;  conditional E-value: 1.2e-06
                EEEEESSTTSSHHHHHHCHCT-CCC-EEETTTTEEEEEEECGGSGGCTTBTTTTCEEEEEEEE CS
         Roc  1 KvvlvGdsgvGKtsllkrfvedkfsekekstigvdfltkevtkikgvendkkvkkvklniWDt 63
                K+vl Gd ++GK+sll+r++  +  ++ k+   +++ t ++ +++g   +   + vk++ WD+
  KOO22864.1 42 KIVLRGDVQTGKSSLLRRLQGLSHVPEMKASSELTVGTIDW-HCEG---S--PDVVKVEAWDV 98
                99*******************99999999988888887765.4555...2..3468999**97 PP

  == domain 2  score: -3.2 bits;  conditional E-value: 2.1
                 CTSCEEEEEEEGHHHHCHHHHHHHHHHHCSSS-EEEEEE CS
         Roc  78 reaalailvydsrssenlkeWlkelkkvagkspvilvgn 116
                 r+a++ai+++d r+  ++ + l+ l +   + pv+l  n
  KOO22864.1 134 RGADAAIVLFDPRKRWTFVYALRLLGEAPAHVPVLLASN 172
                 678899999998877666666666666666666666655 PP

  == domain 3  score: -0.1 bits;  conditional E-value: 0.23
                 EEEEE-SGGCTTT.T-HHHHCTSCEEEEEEEGHHHHCH CS
         Roc  59 niWDtaGqerfrs.lhplylreaalailvydsrssenl 95 
                 ++ D  G   +++ l+  y+r++++a++  +++  ++l
  KOO22864.1 229 SMVDCVGLPTMHAfLRLPYYRAKQAALAAAQREAASKL 266
                 55577777777774566799999999988886665554 PP

>> DLIC  Dynein light intermediate chain (DLIC)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.2   0.0   2.7e-05      0.12      27      85 ..      42     104 ..      28     111 .. 0.86
   2 !    3.3   0.2    0.0066        30     160     188 ..     428     456 ..     421     458 .. 0.89

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 2.7e-05
        DLIC  27 svlvlGedgsGkttliaklqGvee...ekkGrGleylyldvkdedrddltrlnvw.ildGdly 85 
                 ++++ G+  +Gk++l+ +lqG+ +    k  + l    +d + e   d+ ++++w ++d dl 
  KOO22864.1  42 KIVLRGDVQTGKSSLLRRLQGLSHvpeMKASSELTVGTIDWHCEGSPDVVKVEAWdVVDADLC 104
                 68899****************8763315777889999*****************989999986 PP

  == domain 2  score: 3.3 bits;  conditional E-value: 0.0066
        DLIC 160 edlpgsPqrrtprlssvdedsvllPlged 188
                 e l  +P++r++++++++e+ +llPl +d
  KOO22864.1 428 ESLAMAPVQRQEAKDDDEEEEDLLPLLDD 456
                 667889********************886 PP

>> IIGP  Interferon-inducible GTPase (IIGP)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0     2e-05      0.09      30      93 ..      35      98 ..      24     100 .. 0.90
   2 ?   -0.3   0.1     0.096   4.3e+02      35      66 ..     185     216 ..     176     232 .. 0.74

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 2e-05
                HHHT--EEEEEEESTTSSHHHHHHHHTT--TTSTTS--SSCHSHHTS-EEEE-SS-TTEEEEEE CS
        IIGP 30 eiesaklkiavtGdsGnGkssFinaLRliGheeedsAptGvvettkkrtpYssskfPnvvlWDL 93
                +  + ++ki+  Gd  +Gkss +  L ++ h  e  A       t   ++  s+ + +v+ WD+
  KOO22864.1 35 HGARLNIKIVLRGDVQTGKSSLLRRLQGLSHVPEMKASSELTVGTIDWHCEGSPDVVKVEAWDV 98
                5567899************************999999999999999*****************6 PP

  == domain 2  score: -0.3 bits;  conditional E-value: 0.096
                 -EEEEEEESTTSSHHHHHHHHTT--TTSTTS- CS
        IIGP  35 klkiavtGdsGnGkssFinaLRliGheeedsA 66 
                   ++ v Gd G+G ss + a   +   ++d A
  KOO22864.1 185 YESVGVGGDGGAGSSSQLVAWAEVERAAQDEA 216
                 55799***********8887766666555555 PP

>> MCM  MCM P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.0   5.4e-05      0.24      50      82 ..      33      65 ..      23      79 .. 0.82

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 5.4e-05
                SSSBBCSS-EEEEEESSTSTHHHHHHHHHHHSS CS
         MCM 50 dktklrgdinvllvgdpgtaKsqlLkyveklap 82
                 ++  r +i+++l gd+ t+Ks lL++++ l++
  KOO22864.1 33 LGHGARLNIKIVLRGDVQTGKSSLLRRLQGLSH 65
                4567899*******************9987765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (460 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       456  (0.0254337); expected 358.6 (0.02)
Passed bias filter:                      337  (0.0187964); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.46u 0.27s 00:00:00.73 Elapsed: 00:00:00.39
# Mc/sec: 3497.35
//
Query:       KOO22865.1  [L=578]
Description: protein mcm10-like protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    5.1e-26   91.9   4.5    8.2e-26   91.3   4.5    1.3  1  Mcm10           Mcm10 replication factor
    4.1e-16   58.5   0.8    9.3e-16   57.4   0.8    1.6  1  zf-primase      Primase zinc finger
  ------ inclusion threshold ------
      0.094   12.5   0.1       0.18   11.5   0.1    1.3  1  MafB19-deam     MafB19-like deaminase
        6.2    7.0   9.3          3    8.0   1.2    2.8  2  Zn-ribbon_8     Zinc ribbon domain


Domain annotation for each model (and alignments):
>> Mcm10  Mcm10 replication factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   91.3   4.5   1.8e-29   8.2e-26     212     353 .]     397     538 ..     390     538 .. 0.94

  Alignments for each domain:
  == domain 1  score: 91.3 bits;  conditional E-value: 1.8e-29
       Mcm10 212 kiLnakSkhtkllekaeaekqekyfepLvkkekleekmrnirevkckvVtCktCkYtafkasdrCveenHelkwhdavKrFFkCakCgkRtvsld.rlP 309
                 k+L+ak +  +  ++a  e+ ++++  L kk++l ek++++  +++++ +C +C Y a ka  +C+e  H+l+ ++ +KrFF C+ C++ t +l+ rlP
  KOO22865.1 397 KVLQAKPTGAASEREAAREELDRRLGTLSKKDELHEKAQTVSVIEVTAYKCLQCGYFAEKARRECRELGHQLQGVKVKKRFFSCRRCKEHTSALNrRLP 495
                 788888888888899999****************************************************************************8469* PP

       Mcm10 310 skhCsnCgeskwerdgmlkekkGpklgaetLlvRGeEeakFlnS 353
                   +C++Cg+  w+ +g+++    p  ++ + l+RGeE +kF nS
  KOO22865.1 496 DGACRKCGSTDWKEAGLKRSTAAPP-PSAEFLPRGEEVGKFRNS 538
                 *******************999665.666788*********998 PP

>> zf-primase  Primase zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.4   0.8   2.1e-19   9.3e-16       1      43 [.     188     230 ..     188     232 .. 0.96

  Alignments for each domain:
  == domain 1  score: 57.4 bits;  conditional E-value: 2.1e-19
  zf-primase   1 GrskDlglCkatkkdgkkCgswvnkrkgeyCdfHvqsavkkar 43 
                 G++  +++Cka ++dgk+C++wvnk+++eyC++Hv +a+++a+
  KOO22865.1 188 GHASEFAFCKAERRDGKPCSMWVNKEECEYCEYHVGAALRQAN 230
                 99*************************************9976 PP

>> MafB19-deam  MafB19-like deaminase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.1     4e-05      0.18      61     105 ..     198     237 ..     175     241 .. 0.80

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 4e-05
  MafB19-deam  61 AakklkskrlddatlyvtlepCdmCagaivqaglkklvygagnpk 105
                  A    +    + + ++v +e C++C    v a+l++++++a+ pk
   KOO22865.1 198 A----ERRDGKPCSMWVNKEECEYC-EYHVGAALRQANRAAAAPK 237
                  3....3444567*************.799*********9998776 PP

>> Zn-ribbon_8  Zinc ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.4   1.5     0.038   1.7e+02       6      15 ..     445     453 ..     444     464 .. 0.75
   2 ?    8.0   1.2   0.00067         3       6      35 ..     478     506 ..     477     509 .. 0.82

  Alignments for each domain:
  == domain 1  score: 2.4 bits;  conditional E-value: 0.038
  Zn-ribbon_8   6 YrCeeCghef 15 
                  Y+C +Cg  f
   KOO22865.1 445 YKCLQCGY-F 453
                  *******4.4 PP

  == domain 2  score: 8.0 bits;  conditional E-value: 0.00067
  Zn-ribbon_8   6 YrCeeCghefevlqsisdapltaCPeCgs.e 35 
                  + C++C++   +l +  + p+ aC +Cgs +
   KOO22865.1 478 FSCRRCKEHTSALNR--RLPDGACRKCGStD 506
                  78*****99999987..667778*****944 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (578 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       530  (0.029561); expected 358.6 (0.02)
Passed bias filter:                      325  (0.0181271); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.54u 0.26s 00:00:00.80 Elapsed: 00:00:00.42
# Mc/sec: 4083.74
//
Query:       KOO22866.1  [L=207]
Description: golgi reassembly stacking protein 55kda [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.2e-44  152.0   0.0    2.9e-27   95.7   0.0    2.0  2  GRASP55_65  GRASP55/65 PDZ-like domain
    1.6e-07   31.0   0.0     0.0017   18.2   0.0    2.3  2  PDZ_6       PDZ domain
      2e-07   31.2   0.1     0.0017   18.7   0.0    2.2  2  PDZ_2       PDZ domain
    0.00095   19.5   0.1        1.9    8.9   0.0    2.2  2  PDZ         PDZ domain
  ------ inclusion threshold ------
      0.059   12.5   0.0        6.5    5.9   0.0    2.4  3  CofC        Guanylyl transferase CofC like


Domain annotation for each model (and alignments):
>> GRASP55_65  GRASP55/65 PDZ-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.1   0.0   3.7e-20   1.3e-16      41     127 ..      23     110 ..      16     114 .. 0.93
   2 !   95.7   0.0   8.2e-31   2.9e-27      26     125 ..     104     203 ..     103     206 .. 0.98

  Alignments for each domain:
  == domain 1  score: 61.1 bits;  conditional E-value: 3.7e-20
                 TTS-EEEEEEBTTSHHHHHT--TTTEEEEEEE.SSSS.STSCSHHHHTTTSSS-EEEEEEETTTTEEEEEEE---TTSSSSTTTSEEE CS
  GRASP55_65  41 aeevwhvldvlegsPaakagLvpksDYiiGldkgllk.geedlselveaheekelkLlvYnsesdevrevtvkpsrewGgegalGcdv 127
                 +e+ ++v  ++++sP + agL+   DYi+ ++   l  ++ ++++++ +++ k+++L v+++++  +re +++p+++wGg+g+lG+ +
  KOO22866.1  23 HEYGFRVHRIEPNSPGQAAGLQSVLDYIVVANGVRLDhDDGNFVRMIAENKGKPMRLCVFDTHTLRTRETILTPNDDWGGSGLLGITI 110
                 67889***************************976665999********************************************987 PP

  == domain 2  score: 95.7 bits;  conditional E-value: 8.2e-31
                 SSSSEEEEEEE-TTTTTS-EEEEEEBTTSHHHHHT--TTTEEEEEEE.SSSSSTSCSHHHHTTTSSS-EEEEEEETTTTEEEEEEE---TTSSSSTTTS CS
  GRASP55_65  26 gllGlslrlaslekaaeevwhvldvlegsPaakagLvpksDYiiGldkgllkgeedlselveaheekelkLlvYnsesdevrevtvkpsrewGgegalG 124
                 gllG+++r+  +++ ++++ hvldv ++sPa+ agL +++DYi+G+ + l+ g +++ e+v+++e+++++L+vY   +++vr+v+++p+r wGg+g lG
  KOO22866.1 104 GLLGITIRFDVAQDLSKHTLHVLDVFDDSPASAAGLDAYNDYILGVGDLLYDGPDEFGEIVMHNENRTVRLYVYSVRTESVRDVMITPTRTWGGDGYLG 202
                 79************************************************************************************************9 PP

                 E CS
  GRASP55_65 125 c 125
                  
  KOO22866.1 203 S 203
                 6 PP

>> PDZ_6  PDZ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.2   0.0   4.8e-07    0.0017       2      52 ..      29      79 ..      28      81 .. 0.89
   2 !   10.7   0.0    0.0001      0.36       5      52 ..     128     174 ..     124     177 .. 0.89

  Alignments for each domain:
  == domain 1  score: 18.2 bits;  conditional E-value: 4.8e-07
       PDZ_6  2 VtaVdpgsPAdrAGlr.vGDiilsvNGqpveglsladvaallrgsagesvvl 52
                V  ++p+sP+  AGl+ v D+i+  NG+ +  ++   ++++++++ g++++l
  KOO22866.1 29 VHRIEPNSPGQAAGLQsVLDYIVVANGVRL-DHDDGNFVRMIAENKGKPMRL 79
                67899*********9989************.666669999999999999987 PP

  == domain 2  score: 10.7 bits;  conditional E-value: 0.0001
       PDZ_6   5 VdpgsPAdrAGlrv.GDiilsvNGqpveglsladvaallrgsagesvvl 52 
                 V  +sPA  AGl + +D+il v++       ++++ +++  ++++ v+l
  KOO22866.1 128 VFDDSPASAAGLDAyNDYILGVGDLLY--DGPDEFGEIVMHNENRTVRL 174
                 5579*******9988************..**********9999999988 PP

>> PDZ_2  PDZ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.7   0.0   0.00014      0.51      12      69 ..      25      81 ..       6      94 .. 0.75
   2 !   18.7   0.0   4.7e-07    0.0017      10      70 ..     115     177 ..     104     189 .. 0.82

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00014
                -..-EEEEEE-TTSGGGGT.--T.T-EEEEETTB--.SSHHHHHHHHHTS-TT-EEEEEE CS
       PDZ_2 12 dtggvlvvsVkeggPaakaglka.gDvilkvdgkkv.ksledlislllkkkpGdtVkltv 69
                   g  v  +++++P ++agl++  D i+ ++g+++ +++ ++ ++++   +G+  +l v
  KOO22866.1 25 Y--GFRVHRIEPNSPGQAAGLQSvLDYIVVANGVRLdHDDGNFVRMIA-ENKGKPMRLCV 81
                4..889999***********99868***********555555555555.44555555555 PP

  == domain 2  score: 18.7 bits;  conditional E-value: 4.7e-07
                 ---....-EEEEEE-TTSGGGGT.--T.T-EEEEETTB--SSHHHHHHHHHTS-TT-EEEEEEE CS
       PDZ_2  10 eed..tggvlvvsVkeggPaakaglka.gDvilkvdgkkvksledlislllkkkpGdtVkltvl 70 
                  +d  +  + v +V +++Pa++agl a +D il v++    +++d  +++  + +++tV+l v+
  KOO22866.1 115 AQDlsKHTLHVLDVFDDSPASAAGLDAyNDYILGVGDLLY-DGPDEFGEIVMHNENRTVRLYVY 177
                 3335678899***************9968*******9988.88899999999********9998 PP

>> PDZ  PDZ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.7   0.0   0.00059       2.1      23      58 ..      17      58 ..       2      81 .. 0.77
   2 !    8.9   0.0   0.00053       1.9       8      55 ..     102     151 ..      97     174 .. 0.89

  Alignments for each domain:
  == domain 1  score: 8.7 bits;  conditional E-value: 0.00059
                S.....SSSSEEEEEECTTSHHHHHT.SSTTEEEEEETTEET CS
         PDZ 23 r.....gdkgifvsevlpggaaeadg.lkvGDkIlsvNgvdv 58
                      ++ g+ v +++p+++ +a+g  +v D I+  Ngv +
  KOO22866.1 17 LdsvigHEYGFRVHRIEPNSPGQAAGlQSVLDYIVVANGVRL 58
                1445557799****************5568899999999876 PP

  == domain 2  score: 8.9 bits;  conditional E-value: 0.00053
                 TTSESSEEEEEETTSS.SSSSEEEEEECTTSHHHHHTSST.TEEEEEETT CS
         PDZ   8 grgglGfslkggsdqr.gdkgifvsevlpggaaeadglkv.GDkIlsvNg 55 
                 g g lG++++ + +q+  +++++v +v  +++a a+gl + +D Il+v++
  KOO22866.1 102 GSGLLGITIRFDVAQDlSKHTLHVLDVFDDSPASAAGLDAyNDYILGVGD 151
                 57899******999999********************7655999999975 PP

>> CofC  Guanylyl transferase CofC like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.9   0.0    0.0018       6.5     132     167 ..      50      85 ..      36      98 .. 0.86
   2 ?    4.2   0.0    0.0058        21     174     200 ..     155     181 ..     139     194 .. 0.85
   3 ?   -1.9   0.0      0.42   1.5e+03     112     127 ..     181     196 ..     178     199 .. 0.80

  Alignments for each domain:
  == domain 1  score: 5.9 bits;  conditional E-value: 0.0018
        CofC 132 llrksalevkyedfsflkhleearkrglkvkiydsf 167
                 ++  +++++ ++d+ f++ + e + + ++  ++d+ 
  KOO22866.1  50 IVVANGVRLDHDDGNFVRMIAENKGKPMRLCVFDTH 85 
                 4567899***************************86 PP

  == domain 2  score: 4.2 bits;  conditional E-value: 0.0058
        CofC 174 nteedlgeillhGegtkakeylrklgf 200
                 + ++++gei++h e++  + y+ +++ 
  KOO22866.1 155 DGPDEFGEIVMHNENRTVRLYVYSVRT 181
                 668899************999988875 PP

  == domain 3  score: -1.9 bits;  conditional E-value: 0.42
        CofC 112 lekradvviaPargGG 127
                 +e+  dv+i+P+r  G
  KOO22866.1 181 TESVRDVMITPTRTWG 196
                 67889******99755 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (207 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       314  (0.0175135); expected 358.6 (0.02)
Passed bias filter:                      304  (0.0169558); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.41u 0.26s 00:00:00.67 Elapsed: 00:00:00.41
# Mc/sec: 1503.28
//
Query:       KOO22867.1  [L=518]
Description: aspartyl-tRNA synthetase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.8e-76  256.6   0.0    3.6e-76  256.2   0.0    1.1  1  tRNA-synt_2      tRNA synthetases class II (D, K and N)
    1.6e-07   31.2   0.0    2.6e-07   30.5   0.0    1.4  1  tRNA_anti-codon  OB-fold nucleic acid binding domain
     0.0052   16.3   0.2       0.38   10.2   0.0    2.4  2  tRNA-synt_2d     tRNA synthetases class II core domain (F)


Domain annotation for each model (and alignments):
>> tRNA-synt_2  tRNA synthetases class II (D, K and N)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  256.2   0.0     6e-80   3.6e-76       3     313 ..     148     512 ..     146     513 .. 0.95

  Alignments for each domain:
  == domain 1  score: 256.2 bits;  conditional E-value: 6e-80
                  CHHHHTHHHHCCSHHHHHHHHHHHHHHHHHHHHHHHTT-EE----SEESS--SSSS--EEEEETTT.TEEE....-E-S-SHHHHHHHHHCTHSE..E CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx....xxxxxxxxxxxxxxxxxxxx..x RF
  tRNA-synt_2   3 elrlknryldlrtekvskvlrlrstvtkavrkyleengfieietPiLsksdteegarlFkvksrekekeff....aLtqspqlylellivagidr..v 94 
                  ++rl+nr++dlrt+  + ++r++s+v +++r++l  +gfiei+ P ++ +++e+ga  Fk+       ++f    +L+qspqly+++ +++ ++r  v
   KOO22867.1 148 DTRLDNRVIDLRTSANQGIFRIQSEVCALFREFLLGKGFIEIHSPKMIATASEGGADVFKL-------TYFqrhaYLAQSPQLYKQMALMGDLGRpgV 238
                  79***********************************************************.......44445557***************988777* PP

                  EEEEEEE--S--BTTB-S-CEEEEEEEEET-SCHH.HHHHHHHHHHHHHHHHHHCSCCCCCHTTTTTS...EE-SSS-EEEEHHHHHHHHHTS..... CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxx..... RF
  tRNA-synt_2  95 fqiaraFRaEdsrtdrhlaEFtqieaemsfieeed.imqvleelikslvkevlessakdiefvirrns...kdlkkpfkrltykeaieklnei..... 183
                  f+i+++FR E+s t rh++EFt +++em f ++ + +++vle+l+ +++  + e++ak++e v  +      ++ ++  rlty ea++ l+e+     
   KOO22867.1 239 FEIGPVFRSEKSFTHRHMTEFTGLDMEMTFKDDYHeVLEVLEGLFIHIFAGLNERCAKELEAVRAQYPfedLKFGRTALRLTYYEAVQLLREHgpaig 336
                  *******************************98877************************9999887676666777789******************* PP

                  .............................................-SS--HHHHHHHHH....HS--SEEEEEEEBGGGSTTCBBBSTTSTTBBSEEE CS
                  .............................................xxxxxxxxxxxxxx....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  tRNA-synt_2 184 .............................................gkdldkaderalvk....keknepvfvtdfPaelkpFyarkeeddkkltesyD 232
                                                               ++dl++ de++l       ++++++ + +fPa+l+pFy+  + d+++ +++yD
   KOO22867.1 337 aerlaaleqqqkaaeelgssqeakdlaklvsdmrehlktvpvhgdEEDLSTRDEKLLGAvvsrVKDTDFYVIDKFPAALRPFYTMPDPDQPNWANAYD 434
                  *******************************************9999999999999987777788999****************************** PP

                  EEETTEEEEEEEEB--SHHHHHHHHHHCCHHSSSGGGGHHHHHHHHCT--SEEEEEEEHHHHHHHHCT-SSGGGCSSS-XX CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  tRNA-synt_2 233 llingvElvgGslRiedpeeleeklkskgldeeaeekfswylealeyGapphgGlglGldRlvmlllgsesIrdviaFPkl 313
                  ++i+g E+++G++Ri+dpe+l +   +kg+d    +++++y++ ++yGa ph+G g+G++R+vml+lg+++Ir+ ++FP+ 
   KOO22867.1 435 IFIRGEEVTSGAQRIHDPEMLVKLAAQKGVD---LTPIQDYVNSFNYGAFPHAGGGIGMERVVMLFLGLDNIRKSSMFPRD 512
                  *******************************...*********************************************95 PP

>> tRNA_anti-codon  OB-fold nucleic acid binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.5   0.0   4.4e-11   2.6e-07       1      74 [.      35     114 ..      35     116 .. 0.95

  Alignments for each domain:
  == domain 1  score: 30.5 bits;  conditional E-value: 4.4e-11
                      EEEEEEEEEEEEEEETTEEEEEEEETTEEEEEEEETHHHHHHHTTS-TTSEEEEEEEEEEC........TTSSEEEEEEEEE CS
  tRNA_anti-codon   1 VtvaGrvtsisdrsggkvifidlrDgtgriqvvlfreeatklaenlkeGdvvrvtGrvkrr........pggelelkveeie 74 
                      V++++r+++++ ++++k+ fi+lr +  ++qvv+  ++  ++a  l+++++v v  +v++         + g +el+v++i 
       KOO22867.1  35 VWLRARLHNTR-KQSAKLGFIELRQRLSTVQVVVQGKDLVSFACGLPKESIVDVLAEVTTPpapitsctQSG-VELQVTRIY 114
                      89********9.*************************************************99999999999.******997 PP

>> tRNA-synt_2d  tRNA synthetases class II core domain (F)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    3.5   0.0    0.0069        41     104     139 ..     238     269 ..     226     309 .. 0.67
   2 !   10.2   0.0   6.3e-05      0.38     214     233 ..     486     505 ..     473     515 .. 0.86

  Alignments for each domain:
  == domain 1  score: 3.5 bits;  conditional E-value: 0.0069
                   EEEEEEEEBSST.-SSSB-SEEEEEEEEEEETT--HH CS
  tRNA-synt_2d 104 iisigrvfRrda.vDathlaeFhqveglvvdenvsla 139
                   ++ ig vfR+++    +h+ eF+ +++     +++++
    KOO22867.1 238 VFEIGPVFRSEKsFTHRHMTEFTGLDM-----EMTFK 269
                   6899*******9555666666765554.....33333 PP

  == domain 2  score: 10.2 bits;  conditional E-value: 6.3e-05
                   EEEEHHHHHHHHHT-SSGHH CS
  tRNA-synt_2d 214 fGlGveRlamlkygieDiRe 233
                    G+G+eR+ ml +g+++iR+
    KOO22867.1 486 GGIGMERVVMLFLGLDNIRK 505
                   59*****************7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (518 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       572  (0.0319036); expected 358.6 (0.02)
Passed bias filter:                      527  (0.0293937); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.55u 0.28s 00:00:00.83 Elapsed: 00:00:00.44
# Mc/sec: 3557.38
//
Query:       KOO22868.1  [L=635]
Description: ubiquitin carboxyl-terminal hydrolase 47-like isoform 1, partial [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.9e-41  142.3   0.0    2.5e-41  141.9   0.0    1.2  1  UCH       Ubiquitin carboxyl-terminal hydrolase
    2.8e-23   83.0   0.0    8.6e-23   81.4   0.0    1.8  1  UCH_1     Ubiquitin carboxyl-terminal hydrolase


Domain annotation for each model (and alignments):
>> UCH  Ubiquitin carboxyl-terminal hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  141.9   0.0   2.8e-45   2.5e-41       1     257 []     109     514 ..     109     514 .. 0.90

  Alignments for each domain:
  == domain 1  score: 141.9 bits;  conditional E-value: 2.8e-45
                 -EES-SSSTHHHHHHHHHHHTSHHHHHHHHTCHHCCSSTCCCCC-.TT.TTS.TTHHHHHHHHHHHHHHSH-CCEE--HHHHHHHHHHSGGGTSSSTCE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
         UCH   1 tGlsNlGntCymnsvlQcLfsipelrdyllsleevkkesrnkkelnesnplgkkgelakalkdlfkellkskskavsPkklkktlsklaksfsgykqqD 99 
                 +Gl+N G+tCy++s++Q+Lf++p++r  +++l                 p+  +g ++++l+++f +l+ sk +av +k+l+ ++++++ +   ++q+D
  KOO22868.1 109 IGLINQGATCYLSSLVQSLFMTPQFRAAMYDL----GA-----------PTAGSGVISRELQRVFVQLQTSKAQAVDTKALTGSFGWTQAD--AFMQHD 190
                 59************************999993....11...........22233459************99********************..9***** PP

                 HHHHHHHHHHHHHHHHCCHCCCHHHHHHCCCTTSHHHHHH-EEEEE..................................................... CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..................................................... RF
         UCH 100 aqEflaflLdqlhedlnrevaeekwkkhlkrndslitdlfegqlks..................................................... 145
                 +qE+l++l+d l+ +l+ + ++e++            ++++g+  +                                                     
  KOO22868.1 191 VQELLRVLFDALETELEGSAQYEHI-----------RRIYRGEWCDyvrcktcgttssrpsafddvnlairtfdaaqtpirslaaaieafiepetlegd 278
                 ******************5555555...........4444444444444444444446999999999999***************************** PP

                 ................EEEEEEB-SEEEEEEESEEETEE...EEE--SEEB--SEEE-GGGBSS-BTTS-TCS-B........................ CS
                 ................xxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx........................ RF
         UCH 146 ................klklkrlPeiLiihlkRfsynss...ksKlntkvefpeeldlssylaeekkkkteekkk........................ 201
                                  l+++ lP++L++ lkRf ++ +   + Kl+++v +p  l++s +l++ + ++ ++k                          
  KOO22868.1 279 nayhcehcaskqpalkGLRFTMLPPVLCLGLKRFDFDFAelrRVKLHHSVAVPAMLSASTFLEDRAVRQAKRKLAgdnfeadsgeggsstdavsspepe 377
                 ************************************887889*****************99997777776666669*********************** PP

                 .......................................................................EEEEEEEEEESCTTSEEEEEEEECTTTT CS
                 .......................................................................xxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
         UCH 202 .......................................................................YeLiavvvHsGslssGHYvayiknekng 229
                                                                                        YeL+++++HsGs+  GHY+++ik+ ++g
  KOO22868.1 378 vslecndgaaggdisngdgglteggagddgepasgeaaggqaasgkaasavasgeaasgeggnstssaadqYELFSMLMHSGSALAGHYFCFIKDLSSG 476
                 *************************************************************************************************** PP

                 EEEEEETTEEEEE-HHCCCTT...........CEEEEEE CS
                 xxxxxxxxxxxxxxxxxxxxx...........xxxxxxx RF
         UCH 230 kWykydDetvkevkeeeevls...........sayiLfY 257
                  Wyk++D++v+  +++ +++            s y+ fY
  KOO22868.1 477 TWYKFNDSSVSLATDS-QLQAamgatengsagSTYMVFY 514
                 **************87.4444555666688999999999 PP

>> UCH_1  Ubiquitin carboxyl-terminal hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   81.4   0.0   9.6e-27   8.6e-23       2     320 .]     110     486 ..     109     486 .. 0.80

  Alignments for each domain:
  == domain 1  score: 81.4 bits;  conditional E-value: 9.6e-27
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       UCH_1   2 GLEnhivnsYlNslLQvlyfipplrnlalshlakeckkehcLlcElgflfdmldkakglncqasnFlralssipeasalglileeeeetekssaislss 100
                 GL n+ +++Yl sl+Q l+++p +r+ a+  l+   +    ++ El+ +f  l+++k + + ++ ++ +++ ++ a+a+     +  +           
  KOO22868.1 110 GLINQGATCYLSSLVQSLFMTPQFRA-AMYDLGAPTAGSGVISRELQRVFVQLQTSKAQAVDTKALTGSFGWTQ-ADAFMQ---H--D----------- 190
                 8999*********************5.88899999************************************555.555433...3..3........... PP

                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxx RF
       UCH_1 101 liqsfnrflldqlekelketkknsseeesaieqllgtkaettirclkCgseksrksstlvldlkyPkpsnekkeakvtfasilkssler...ekttraw 196
                  +q++ r+l+d le+el+ +      + + i ++++ ++ + +rc++Cg+++sr+s +  ++l    +   ++++  ++a  +++++e    e ++ + 
  KOO22868.1 191 -VQELLRVLFDALETELEGSA-----QYEHIRRIYRGEWCDYVRCKTCGTTSSRPSAFDDVNLAIR-TFDAAQTPIRSLAAAIEAFIEPetlEGDNAYH 282
                 .588************99975.....6788*********************************662.222356667899*********97777899*** PP

                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xx....xxxxxxxx.................................................xxxxx RF
       UCH_1 197 CekCkryqpteqrktvknlPpvLalnakle.ee....eelelwkt.................................................knwlp 241
                 Ce+C ++qp  ++ +++ lPpvL+l +k++  +    +      +                                                      
  KOO22868.1 283 CEHCASKQPALKGLRFTMLPPVLCLGLKRFdFDfaelR------RvklhhsvavpamlsastfledravrqakrklagdnfeadsgeggsstdaV---- 371
                 ****************************9855544331......345566788888888888888888888877777766666666666666552.... PP

                 xxxxxxxxxxxxx.........................................................xxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       UCH_1 242 leiklsldedknl.........................................................eeklkeerekakaekeikvYeLqsvvvhi 283
                             +                                                         + +  + +  +++++    YeL+s+ +h 
  KOO22868.1 372 ------------SspepevslecndgaaggdisngdgglteggagddgepasgeaaggqaasgkaasavaSGEAASGEGGNSTSSAADQYELFSMLMHS 458
                 ............033444444444444457777777777777777777777888888888888888888855555555557889999************ PP

                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       UCH_1 284 gdskesghLvslvkvaekelerdppesqWylFNDflV 320
                 g++  +gh+ +++k        d + + Wy+FND +V
  KOO22868.1 459 GSAL-AGHYFCFIK--------DLSSGTWYKFNDSSV 486
                 *777.*********........334589******998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (635 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       586  (0.0326845); expected 358.6 (0.02)
Passed bias filter:                      384  (0.0214178); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.62u 0.24s 00:00:00.86 Elapsed: 00:00:00.42
# Mc/sec: 4516.85
//
Query:       KOO22869.1  [L=466]
Description: hypothetical protein Ctob_002052 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.9e-06   27.2   0.0    8.7e-06   25.7   0.0    1.8  2  Galactosyl_T  Galactosyltransferase


Domain annotation for each model (and alignments):
>> Galactosyl_T  Galactosyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.7   0.0   4.9e-10   8.7e-06       2     166 ..     129     306 ..     128     318 .. 0.80
   2 ?   -2.5   0.0      0.21   3.7e+03     174     187 ..     344     357 ..     342     374 .. 0.82

  Alignments for each domain:
  == domain 1  score: 25.7 bits;  conditional E-value: 4.9e-10
  Galactosyl_T   2 rRnaiRktWmnekeaegnriktlFlvGlsakedkkvkelvmeeaklygDivvvdledsYenltlKtltlllwavskvp......eaklilkvDdDvy 92 
                   rR+ iR++W   ++    ++ + Fl+G    +++ ++e + ee k ++D++ +         t+K   + ++a+ + p       +++  kvDdD +
    KOO22869.1 129 RRDGIRRSWKRWDQ-DNSGVLVCFLIGRVGIAAEVLAE-LGEEGKAHNDLLWLVNATDAGVPTIKGYHWWRAANRLLPppgstrGIRIAAKVDDDSF 223
                   9********99994.7799***********88888888.8899999****9765554557789************99844443357999******** PP

  Galactosyl_T  93 vnpdkLlsllkrelidpsessvygkvl.kegavirkkksk..wyvseeeykfsr......yp..pyasGtlYvlsreavekllka 166
                   +++ +L+  + r   +  e   yg +    + + + k +   w+ +  +y  ++      yp  p+++G l +ls+ +v++++ +
    KOO22869.1 224 LHVGNLMADMRRL--HCAEYLHYGSIGfTGYDPSIWKLCGwsWQTHGANYRKNQcadhgaYPpfPFMNGVLELLSAPLVRYVATS 306
                   ***********99..8899999999962455566667776666666667777768888887622579999999**9999999865 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 0.21
  Galactosyl_T 174 kleDvlvGilaedl 187
                   ++eDv +G ++ ++
    KOO22869.1 344 QNEDVALGFWLSRA 357
                   67899999888765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (466 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       304  (0.0169558); expected 358.6 (0.02)
Passed bias filter:                      247  (0.0137766); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.26s 00:00:00.74 Elapsed: 00:00:00.43
# Mc/sec: 3273.78
//
Query:       KOO22870.1  [L=177]
Description: low-density lipoprotein receptor-related protein 4-like protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    8.8e-07   29.3   0.1     0.0024   18.3   0.0    3.7  3  Ldl_recept_b  Low-density lipoprotein receptor repeat class B


Domain annotation for each model (and alignments):
>> Ldl_recept_b  Low-density lipoprotein receptor repeat class B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.4   0.4     0.025   4.5e+02       1       9 [.       5      13 ..       5      42 .. 0.76
   2 !   18.3   0.0   1.3e-07    0.0024       1      40 [.      46      83 ..      46      83 .. 0.85
   3 !    4.8   0.0    0.0023        41       2      17 ..      87     101 ..      86     122 .. 0.76

  Alignments for each domain:
  == domain 1  score: 1.4 bits;  conditional E-value: 0.025
                  TEEEEEETT CS
  Ldl_recept_b  1 gklYWtDws 9 
                  ++++Wt w+
    KOO22870.1  5 RRVFWTSWG 13
                  688999876 PP

  == domain 2  score: 18.3 bits;  conditional E-value: 1.3e-07
                  TEEEEEETTTTEEEES-STTS---EEEE-SS..-S-EEEEEE CS
  Ldl_recept_b  1 gklYWtDwsldasisvadlnGshrktlfqed..lqnPrgiAv 40
                  g+l+WtD++ + +++ a+l+G+    + +++  l+ P g+++
    KOO22870.1 46 GRLFWTDAKAG-KVQCAALDGTR---VCDVAtgLDEPFGLVL 83
                  79*********.**********9...5555566888888875 PP

  == domain 3  score: 4.8 bits;  conditional E-value: 0.0023
                   EEEEEETTTTEEEES- CS
  Ldl_recept_b   2 klYWtDwsldasisva 17 
                   +l+WtD + +  i++ 
    KOO22870.1  87 HLFWTDRRRG-AIQSC 101
                   69****9999.77775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (177 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       426  (0.0237604); expected 358.6 (0.02)
Passed bias filter:                      323  (0.0180155); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.24s 00:00:00.62 Elapsed: 00:00:00.38
# Mc/sec: 1382.38
//
Query:       KOO22871.1  [L=232]
Description: hypothetical protein Ctob_002050 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    9.3e-09   35.6   0.0    0.00045   20.6   0.0    3.0  3  Acylphosphatase  Acylphosphatase


Domain annotation for each model (and alignments):
>> Acylphosphatase  Acylphosphatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.6   0.0   2.5e-08   0.00045      25      69 ..      86     131 ..      84     138 .. 0.90
   2 ?    1.2   0.0     0.028     5e+02      38      61 ..     154     177 ..     147     195 .. 0.82
   3 !   10.3   0.0   3.9e-05       0.7      38      74 ..     195     231 ..     189     232 .] 0.91

  Alignments for each domain:
  == domain 1  score: 20.6 bits;  conditional E-value: 2.5e-08
  Acylphosphatase  25 lglkGyvrNlsdgsVeivaegeeekvekfleelksgppk.arvdev 69 
                       gl+G +  l+ g++ei aeg+++++ +f++++++     a+v+e 
       KOO22871.1  86 TGLTGVIYSLPSGRIEIIAEGPQDTITAFVKRIRAAAAVgAQVKES 131
                      59*********************************66666999875 PP

  == domain 2  score: 1.2 bits;  conditional E-value: 0.028
  Acylphosphatase  38 sVeivaegeeekvekfleelksgp 61 
                      + +i ++g+e++++ + ++lk++ 
       KOO22871.1 154 TAKITMSGPEADMDYIARHLKTEA 177
                      67899************9999876 PP

  == domain 3  score: 10.3 bits;  conditional E-value: 3.9e-05
  Acylphosphatase  38 sVeivaegeeekvekfleelksgppkarvdeveveel 74 
                      ++ +v++g+ e +++f++++  gpp ar ++v+v+++
       KOO22871.1 195 QLSVVCSGKSERLKSFVRWCYLGPPLARPEKVQVQWA 231
                      6889*****************************9985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (232 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       342  (0.0190752); expected 358.6 (0.02)
Passed bias filter:                      282  (0.0157287); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.23s 00:00:00.64 Elapsed: 00:00:00.39
# Mc/sec: 1806.53
//
Query:       KOO22872.1  [L=295]
Description: hypothetical protein Ctob_002047 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
  ------ inclusion threshold ------
      0.065   13.9   0.2       0.19   12.4   0.2    1.8  1  Tn7_Tnp_TnsA_C  TnsA endonuclease C terminal


Domain annotation for each model (and alignments):
>> Tn7_Tnp_TnsA_C  TnsA endonuclease C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.2   1.1e-05      0.19       3      66 ..      64     127 ..      62     138 .. 0.89

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 1.1e-05
  Tn7_Tnp_TnsA_C   3 pkvlvkNikwlhpyrriedddlseeeleelaelllerlrenpdttlrellkelDkeyslergts 66 
                     p++l++N+k +     ++ +++s+ e +++ +l +++l++   ++l+++l++ D+++  ++g  
      KOO22872.1  64 PRILAENLKAIDQRLFLRLAEMSDAESDDYEKLRIRQLATLVASSLETILAKADEQMDADAGVV 127
                     8899************999**************************************9998864 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (295 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       566  (0.031569); expected 358.6 (0.02)
Passed bias filter:                      440  (0.0245412); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.25s 00:00:00.68 Elapsed: 00:00:00.38
# Mc/sec: 2299.61
//
Query:       KOO22873.1  [L=210]
Description: hypothetical protein Ctob_002044 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (210 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       337  (0.0187964); expected 358.6 (0.02)
Passed bias filter:                      197  (0.0109878); expected 358.6 (0.02)
Passed Vit filter:                         9  (0.00050198); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.22s 00:00:00.56 Elapsed: 00:00:00.35
# Mc/sec: 1818.50
//
Query:       KOO22874.1  [L=770]
Description: hypothetical protein Ctob_002045 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.24   11.3   1.7        0.8    9.7   1.7    2.0  1  IQ        IQ calmodulin-binding motif
        7.9    6.6   7.1        3.2    7.9   0.5    2.9  2  PspB      Phage shock protein B


Domain annotation for each model (and alignments):
>> IQ  IQ calmodulin-binding motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   1.7   8.9e-05       0.8       2      17 ..     350     365 ..     349     369 .. 0.91

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 8.9e-05
                 HHHHHHHHHHHHHHHH CS
          IQ   2 kaaikIQaawRGylaR 17 
                 +aa+k Qa +RG +aR
  KOO22874.1 350 AAATKVQASVRGRQAR 365
                 79*************9 PP

>> PspB  Phage shock protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.4   1.1     0.076   6.8e+02      32      55 ..     128     151 ..     115     156 .. 0.82
   2 ?    7.9   0.5   0.00036       3.2      26      59 ..     234     265 ..     231     267 .. 0.87

  Alignments for each domain:
  == domain 1  score: 0.4 bits;  conditional E-value: 0.076
        PspB  32 skglsaedekrLeellekAeklee 55 
                 + glsa ++++Le+l+e+ ++++e
  KOO22874.1 128 QIGLSAAQTQELERLREQNSEIHE 151
                 5589999**********9988776 PP

  == domain 2  score: 7.9 bits;  conditional E-value: 0.00036
        PspB  26 rskkkrskglsaedekrLeellekAekleeRiet 59 
                  sk++++++l   +  +L++l+++Ae l +Rie+
  KOO22874.1 234 QSKRHQQRML--AEVAELKSLRHQAEALGARIEA 265
                 6788888888..68899***************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (770 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1582  (0.0882369); expected 358.6 (0.02)
Passed bias filter:                      476  (0.0265492); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.74u 0.27s 00:00:01.01 Elapsed: 00:00:00.46
# Mc/sec: 5029.94
//
Query:       KOO22875.1  [L=107]
Description: hypothetical protein Ctob_002046 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (107 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       190  (0.0105974); expected 358.6 (0.02)
Passed bias filter:                      180  (0.0100396); expected 358.6 (0.02)
Passed Vit filter:                         7  (0.000390429); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.22s 00:00:00.56 Elapsed: 00:00:00.37
# Mc/sec: 864.57
//
Query:       KOO22876.1  [L=392]
Description: protein kinase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.059   13.1   0.0        0.1   12.4   0.0    1.4  1  NIF       NLI interacting factor-like phosphatase


Domain annotation for each model (and alignments):
>> NIF  NLI interacting factor-like phosphatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   5.7e-06       0.1       4      65 ..     200     264 ..     197     272 .. 0.72

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 5.7e-06
         NIF   4 VLDLDetLvhskl.eksk....klkvegekvevsvlkRpgldefLkelsklyevvifTasseeyaea 65 
                 ++D D+tL+++++ e+ +     ++++    e   ++   ++ +L+++sk+ +v+i+T++se +++ 
  KOO22876.1 200 IFDWDDTLLCTSHlEMVQrqygAIPAQV--REQLSSLERIVQTLLRQASKMGKVFIITNASEGWVQH 264
                 89*******8885222223333333332..2344455589**********************99986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (392 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       507  (0.0282782); expected 358.6 (0.02)
Passed bias filter:                      442  (0.0246528); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.22s 00:00:00.69 Elapsed: 00:00:00.37
# Mc/sec: 3208.33
//
Query:       KOO22877.1  [L=719]
Description: phosphatidylinositol 4-kinase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.6e-29  103.5   0.0    8.7e-22   78.1   0.0    2.2  2  PI3_PI4_kinase  Phosphatidylinositol 3- and 4-kinase
  ------ inclusion threshold ------
      0.054   12.8   0.0      0.087   12.1   0.0    1.3  1  DUF4135         Domain of unknown function (DUF4135)
       0.08   12.3   0.0       0.18   11.2   0.0    1.5  1  PI3Ka           Phosphoinositide 3-kinase family, accessory d


Domain annotation for each model (and alignments):
>> PI3_PI4_kinase  Phosphatidylinositol 3- and 4-kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.4   0.0   7.4e-09   4.4e-05       3      70 ..     457     520 ..     456     527 .. 0.94
   2 !   78.1   0.0   1.5e-25   8.7e-22     115     234 ..     527     648 ..     520     657 .. 0.85

  Alignments for each domain:
  == domain 1  score: 23.4 bits;  conditional E-value: 7.4e-09
                     EEEEECSSCHHHHHHHHHHHHHHHHHHHHTTTTCCCT-------EEESSSSEEEEE--TTEEEHHHHH CS
  PI3_PI4_kinase   3 agiykvgddlrqdelivqvfklmdeelskennpkrrklalktysviplgrkcgiielvassetaasll 70 
                     a+i+k +d l q++  v++++ +d + +  ++p+r    l++y+++++++  g+ie+v+++++++s+ 
      KOO22877.1 457 AFIVKSNDELLQEQFAVSLIREFDRIFRHCRLPLR----LRPYRILATSPTTGLIEVVPNAKSLDSVK 520
                     6899*******************************....***********************999875 PP

  == domain 2  score: 78.1 bits;  conditional E-value: 1.5e-25
                     THHHHHHHHHSSSHH..HHHHHHHHHHHHHHHHHHHHHHHT-TT--TTTEEEETTTSEEEESSTTTCC.TCSHCSSSS-.SSSSSS-THHHHHHT CS
  PI3_PI4_kinase 115 sgllqeFvkkspsae..ewlearkqFvrslaklsvldyilgngDRhldNilvdktsgklihIDfGlil.pdewkllpfpqekvPfrltrelvlai 206
                      +l ++F +++ +a    + +ar++Fv+sla +sv++y+l++ DRh++Nil+ + +g +ihIDfG+ l  + +k+++f+    Pf+lt e v+++
      KOO22877.1 527 YSLADFFRRRYGGASsvSFHRARRNFVQSLAAYSVVSYLLQLKDRHNGNILL-HANGSVIHIDFGFLLsNSPGKNMGFE--AAPFKLTGEWVELM 618
                     5788999999999963378888******************************.***************88899999*95..99************ PP

                     ..STTCCHHHHHHHHHHHHHHHHHTHHHHH CS
  PI3_PI4_kinase 207 ..dpskdeglfresceealealrrdqnllt 234
                         s  +  +r+++++ ++ +rr+ + ++
      KOO22877.1 619 ggIGSPWFRYYRTLVVRGFQEARRHRDKVL 648
                     443445578889999999999999887665 PP

>> DUF4135  Domain of unknown function (DUF4135)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   1.5e-05     0.087     130     177 ..     547     595 ..     480     612 .. 0.83

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 1.5e-05
     DUF4135 130 eeverfYrraGallallyllggtDlheeNl.iasgeqpvliDlEtllth 177
                 ++ ++f + + a+  ++yll+ +D h++N+ + +++ ++ iD+  ll++
  KOO22877.1 547 RARRNFVQSLAAYSVVSYLLQLKDRHNGNIlLHANGSVIHIDFGFLLSN 595
                 556789999999******************5666677889***999966 PP

>> PI3Ka  Phosphoinositide 3-kinase family, accessory domain (PIK domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0     3e-05      0.18     107     181 ..      19      95 ..       9      99 .. 0.75

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 3e-05
                 HHHHHHHHHHH.HHHGGSSSSSSHHHHHHHHHHHHSHHHHHHHHHHHHHHH.HCCTHHHHHHHHHHHHHHHCHHHHH CS
       PI3Ka 107 eelllYllQLV.qalkyepikdsalaefLlkralknkrlghfffWyLksei.edkevserfksllesylrklskslk 181
                  +l+  l+QL   +l +   +   ++ fLl++    +++g +++W L ++  ++   s   ++++ s+++++++s++
  KOO22877.1  19 IALQSVLPQLLyYVLTHSGPVSREVKAFLLRTCAAAPSFGLELYWLLLAQPrHTAAASAADETVRLSLIEQMKQSVS 95 
                 5677788887625788888899999***********************99854444555555666666666666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (719 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       332  (0.0185175); expected 358.6 (0.02)
Passed bias filter:                      271  (0.0151152); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.58u 0.29s 00:00:00.86 Elapsed: 00:00:00.47
# Mc/sec: 4608.20
//
Query:       KOO22878.1  [L=761]
Description: tyrosyl-tRNA synthetase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    3.8e-48  164.3   0.0    1.1e-42  146.4   0.0    3.1  3  tRNA-synt_1b  tRNA synthetases class I (W and Y)


Domain annotation for each model (and alignments):
>> tRNA-synt_1b  tRNA synthetases class I (W and Y)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  146.4   0.0   6.1e-47   1.1e-42       4     289 ..      82     380 ..      79     384 .. 0.82
   2 !    3.0   0.0    0.0029        53      36     120 ..     460     550 ..     431     564 .. 0.76
   3 !   11.3   0.0   8.5e-06      0.15     209     292 ..     639     730 ..     592     731 .. 0.83

  Alignments for each domain:
  == domain 1  score: 146.4 bits;  conditional E-value: 6.1e-47
                   S--EEEEEEETSSS-BGG.GHHHHHHHHHHHHTTSEEEEEEEHHHHHTTTTT-SSHHHHHHHHHHHHHHHHHHHHHTCHTTTEEEEETHHHHTTH.. CS
  tRNA-synt_1b   4 rplrvysGidPTgklHlG.ylvplkklvelqkaghevffliaDlhAiigdpskaeerklrkreevlenaikaqlakgldpekaevvlqsewlehl.. 97 
                     +++y G++P+g++H++  + + +++ + + ag + +f++aD+ A+++d++  +++ ++   ++l  +   + a+g+d +++++++  + + +   
    KOO22878.1  82 PSFILYDGFEPSGRMHIAqGVFKAMNVNKCTAAGGTFIFWVADWFALMNDKMGGDLERIKIVGQYLIHV---WTAVGMDMTRVKFMWCADEITKHar 175
                   6789************************************************99999999999999999...*************998876665547 PP

                   HHHHHHHHHHTTCBHHHHHHHHHCCHHCSSSC--BHHHHHHHHHHHHHHHHTCHSEEEEEGGGHHHHHHHHHHHHHHHHHSTTSS-EEEEET.-BBS CS
  tRNA-synt_1b  98 elaellrdlgklgslnrmlqfksvkkrleegegislgeftYplLqaaDilllkadlvpgGsDQkqnielgrdlarrfnkkevfkkpegltvp.lltg 193
                    +++   d+++ +++ r+ ++ +++ rle   ++++++++Yp++q+ Di++lkad++  G DQ++   l+r+++++++ k    kp +l ++ l  +
    KOO22878.1 176 GYWTQALDIARRFKIDRLKRCCQIMGRLED--SLTAAQILYPIMQCTDIFFLKADICQLGVDQRKVNMLAREYCDSAGIK---LKPIILSHHmLYGL 267
                   8999999***********************..79*******************************************999...8********55566 PP

                   TTSSSBTTCETTCGC-BTTCCHHHHHHHHHHCHCSTTCSHHHHHHHHHTHHH.................CHHHHHHHHCCSEEESSHHHHHHHHHCC CS
  tRNA-synt_1b 194 ldGekKmSKSagnsaIfLddekesvkkkiqkavtdsdeevekllklktelsn.................elierleavsgkkpkreaeellaeevtk 273
                   ++G+ KmSKS ++saIf++d  e+v  ki +a++   ee    +++   ++                  + +     + g ++++++  + +++  +
    KOO22878.1 268 SKGQAKMSKSNKESAIFMEDTSEDVARKITNAFCPRTEETFEEKREEENMQLvedklknpcldyvqhiiFCLPGAVFTAGGQTYTTFAAVREAFLGG 364
                   78999*****************************999843333333333332334455555555555444444444445555556666666666666 PP

                   CCHHHHHHHHHHHHHH CS
  tRNA-synt_1b 274 lvhggdlkkalaealn 289
                   +++  dlk +l  a+ 
    KOO22878.1 365 TLSEADLKAGLIGAID 380
                   6666666666655555 PP

  == domain 2  score: 3.0 bits;  conditional E-value: 0.0029
                   TSEEEEEEEHHHHHTTTTT.-SSHHHHHHHHHHHHHH.HHHHHHHTCHTTT..EEEEETHHHH..TTHHHHHHHHHHHTTCBHHHHHHHHH CS
  tRNA-synt_1b  36 ghevffliaDlhAiigdps.kaeerklrkreevlena.ikaqlakgldpek..aevvlqsewl..ehlelaellrdlgklgslnrmlqfks 120
                   g + ++++ D+ A++ +     ++r+  +++  ++n    a l+++ +     ++vvlqse l  ++++++  + + g++++l+r+ + ++
    KOO22878.1 460 GEKKILWLCDWSAFTLNCLsGGKSREDDHKAIAAANDlFVAALRALAPSLMaeVTVVLQSEALlaNSSDYWISVINAGRVFQLSRVRAVDE 550
                   66677889999999999987777777777777777777666666555443333779999997622667999999***********999998 PP

  == domain 3  score: 11.3 bits;  conditional E-value: 8.5e-06
                   -BTTCCHHHHHHHHHHCHCSTTC..SHHHHHHHHHTHHH......CHHHHHHHHCCSEEESSHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH CS
  tRNA-synt_1b 209 IfLddekesvkkkiqkavtdsde..evekllklktelsn......elierleavsgkkpkreaeellaeevtklvhggdlkkalaealnell 292
                   + L d + +v+ k++ka++++++  ++  l+ +  ++ +       +++r e+ +g+ + +   +l a+++++ +h+gd+k  + +a+ ++l
    KOO22878.1 639 LLLFDAQPDVQRKMKKAFCEPGNvaQNPVLSIVEEVVLPfsgerrLVVQRKEENGGHLTFEGSAQLRAAFASGDLHPGDFKPSVRDAVDAVL 730
                   67889999***************877777777777777788888555555555555556556677889999999**************9988 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (761 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       585  (0.0326287); expected 358.6 (0.02)
Passed bias filter:                      477  (0.0266049); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.63u 0.26s 00:00:00.89 Elapsed: 00:00:00.42
# Mc/sec: 5495.87
//
Query:       KOO22879.1  [L=379]
Description: hypothetical protein Ctob_002043 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    4.7e-15   56.3   0.2    8.2e-15   55.5   0.2    1.4  1  2OG-FeII_Oxy_3  2OG-Fe(II) oxygenase superfamily
    3.4e-07   30.7  10.6    3.4e-07   30.7  10.6    3.0  2  ShK             ShK domain-like


Domain annotation for each model (and alignments):
>> 2OG-FeII_Oxy_3  2OG-Fe(II) oxygenase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.5   0.2   9.2e-19   8.2e-15       1      96 []     257     356 ..     257     356 .. 0.88

  Alignments for each domain:
  == domain 1  score: 55.5 bits;  conditional E-value: 9.2e-19
                     -EEEEE-TT-EEEEE-SS--.--TT.-.EEEEEEEEE....ET-B--EEE..........---TT-EEEEE-..B-T...........EEE--B. CS
  2OG-FeII_Oxy_3   1 lqvlrygegqeykpHvDnfe.keegsgqrrltvllyLnekeseeGGelelyekdkeavkikpkkgrlvlFesdellp...........Hevlpvt 83 
                     +qvl+y+ gq+y+ H+D+ + +   +g r +t+++yL+  + e+GG  ++   ++  +++kpk gr +l++s  +++           He+lpv 
      KOO22879.1 257 FQVLKYEVGQFYRQHHDQQSaHWTPQGVRLFTFFVYLS--DVEDGGGTRF---TDLGITVKPKLGRGILWPS--VQDgnlrdsdrrthHEALPVV 344
                     69***************98896666689*********6..5599999999...4467999************..65578***************6 PP

                     -SS-EEEEEEEEE CS
  2OG-FeII_Oxy_3  84 kggeRlsltgwir 96 
                     k g ++++++w +
      KOO22879.1 345 K-GVKYAANLWQH 356
                     6.5********86 PP

>> ShK  ShK domain-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.7   5.7     0.021   1.9e+02       2      38 .]      44      80 ..      43      80 .. 0.82
   2 !   30.7  10.6   3.7e-11   3.4e-07       1      38 []      91     126 ..      91     126 .. 0.98

  Alignments for each domain:
  == domain 1  score: 2.7 bits;  conditional E-value: 0.021
         ShK  2 CtDpssdCaswaalg..fCtnptyrdlmkeqCpktCgfC 38
                C+D ++dC          C + +  + +   C k+Cg C
  KOO22879.1 44 CEDLRDDCNEVVGPLleNCGQDP--SDVLMKCMKSCGAC 80
                99999999988765555698888..888889*******9 PP

  == domain 2  score: 30.7 bits;  conditional E-value: 3.7e-11
         ShK   1 tCtDpssdCaswaalgfCtnptyrdlmkeqCpktCgfC 38 
                 +C D++  Caswaa g+C+ ++   +m ++C ++Cg+C
  KOO22879.1  91 QCADTNAECASWAASGECQTNP--RYMLSHCTTSCGTC 126
                 6*********************..************** PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (379 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       562  (0.0313459); expected 358.6 (0.02)
Passed bias filter:                      269  (0.0150036); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.47u 0.22s 00:00:00.69 Elapsed: 00:00:00.39
# Mc/sec: 2899.23
//
Query:       KOO22880.1  [L=515]
Description: hypothetical protein Ctob_002048 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
     0.0074   16.7   0.0       0.35   11.3   0.0    2.5  2  CCDC53    Subunit CCDC53 of WASH complex


Domain annotation for each model (and alignments):
>> CCDC53  Subunit CCDC53 of WASH complex
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    2.6   0.0    0.0092   1.6e+02      44      83 ..     171     247 ..     161     285 .. 0.72
   2 !   11.3   0.0   1.9e-05      0.35      29     106 ..     293     481 ..     290     502 .. 0.78

  Alignments for each domain:
  == domain 1  score: 2.6 bits;  conditional E-value: 0.0092
      CCDC53  44 LsSipgleeveaeaaeastsddn.....................................aarkgppppppsseaaa 83 
                 ++Si +le+ ea+++e+++++++                                       r+gpp+p+p sea+ 
  KOO22880.1 171 MTSISDLEKSEAKGKESQRRSHQmkiflavmagrsapcrrphihvwaaneskpisprrrrVWRSGPPRPKPLSEASL 247
                 67***********9888887777999999998888888888887777666666666666555555555555555444 PP

  == domain 2  score: 11.3 bits;  conditional E-value: 1.9e-05
      CCDC53  29 rlqrleitlalLEakLsSipgleeveaeaaeastsddn............................................................. 66 
                 r +r+e +  +LEa+L++   l++++a+++   +sd++                                                             
  KOO22880.1 293 RAERVEREFDVLEAQLNALSALTHEQASVN---DSDRSlllrllsgmrnlkcplsrsplaspsvalsvrhfseydgateassardpqfdielsralrfa 388
                 7789**************999999999853...34334789*********************************************************9 PP

      CCDC53  67 ....................................................aarkgppppppsseaaaaaaqaee.asqaeesaeeeaeeqe 106
                                                                     ++r+g ++  +++++aaaaaq  + ++  +e ++++a++ +
  KOO22880.1 389 hrnyrsaptlamplaeskslqatrpdhlnklaaqkrmrrrfplfwshalhvaEQREGHAAARAAMQTAAAAAQRVPaHNDVSEGSPVAAPVAT 481
                 999999999999999999999999999999999999999999999998888755555555444444444444433303344444444444443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (515 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       711  (0.0396564); expected 358.6 (0.02)
Passed bias filter:                      463  (0.0258241); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.54u 0.23s 00:00:00.77 Elapsed: 00:00:00.40
# Mc/sec: 3887.73
//
Query:       KOO22881.1  [L=725]
Description: protein transport protein sec24-like protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.6e-41  141.8   0.0    4.5e-41  141.0   0.0    1.4  1  Sec23_trunk     Sec23/Sec24 trunk domain
    3.5e-24   84.6   0.6    6.3e-24   83.8   0.6    1.4  1  Sec23_helical   Sec23/Sec24 helical domain
    2.4e-17   63.4   0.0    5.3e-17   62.4   0.0    1.6  1  Sec23_BS        Sec23/Sec24 beta-sandwich domain
    5.7e-16   58.3   3.0    1.3e-15   57.1   3.0    1.7  1  zf-Sec23_Sec24  Sec23/Sec24 zinc finger
    2.1e-07   30.8   0.0    4.5e-07   29.7   0.0    1.5  1  Gelsolin        Gelsolin repeat


Domain annotation for each model (and alignments):
>> Sec23_trunk  Sec23/Sec24 trunk domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  141.0   0.0   1.2e-44   4.5e-41       2     231 ..     125     349 ..     124     363 .. 0.91

  Alignments for each domain:
  == domain 1  score: 141.0 bits;  conditional E-value: 1.2e-44
                  S--EEEEEEE-SHHHHHHTHHHHHHHHHHHHCTTSSTSTT-EEEEEEESSSEEEEETSTTSSSSEEEEECHTTSCCSSTS.SSSSEETTTTHHHHHHH CS
  Sec23_trunk   2 kppvflFviDvsleaikegelkalkeslkqsLdllPeepralvglitfdsvvhffelkselrqpkelvvsdlqdvflpla.drlLvplseseavledl 98 
                   pp  + ++  s+ ++ +g  +a++ sl  +L  lP  p ++ +l+tfd+ vhf+ ++ e    + ++v d ++v lpl+ + lL+ l ++ +++e++
   KOO22881.1 125 RPPPIVVLLEASIASVTSGIFHAVIASLGAILPTLP--PYTEFALVTFDEGVHFYHVGAEGT-LRTMSVPDNTEVCLPLPpSALLMRLGDALDHVEQI 219
                  67777889999*************************..*********************765.566788888999999888***************** PP

                  HHHHHHHSTT-TTC-----HHHHHHHHHHHHCHCTS-EEEEEEESS---SSTTTSS-SBTTSCCTSSTTCHHCHSCSSSCHHHHHHHHHHHCTEEEEE CS
  Sec23_trunk  99 LeelpemfavtagkrperalgpalkaavellkavetggkiivfvgslptvgaggklksredeslldidkekaklvkkadkfYkkLakecvkqgisvDl 196
                  L+ lpe+ +++  ++  +a+g+al+a + ll+  +tgg++++f+  lp +g  +kl++r+d +l+++dke+a + + +   +++Lake++k +++v  
   KOO22881.1 220 LKALPELVTHS--QKADTAFGSALQACHLLLE--KTGGRLLCFQHVLPVLGH-MKLQQRDDVRLYGTDKERALFAPPEGTGWEALAKEMAKAQVCVSS 312
                  ******99999..9******************..99****************.*******************************************98 PP

                  EEE.CSS--SHHHHTHHHHTTT-EEEEETTTC.CHHH CS
  Sec23_trunk 197 Flf.sldyvdlaelkqlaeltgGqvvlydsFs.aekd 231
                  F f s++yvd+a    la+ tgGqv+ly+s   +++d
   KOO22881.1 313 FHFtSSAYVDVAACAILATRTGGQVYLYQSCVpEQRD 349
                  8652789**********************98754444 PP

>> Sec23_helical  Sec23/Sec24 helical domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   83.8   0.6   1.8e-27   6.3e-24       1     102 [.     464     566 ..     464     567 .. 0.97

  Alignments for each domain:
  == domain 1  score: 83.8 bits;  conditional E-value: 1.8e-27
                    -HHHHHHHHHHHHHHHTTTS-HHHHHHHHHHHHHHHHHHHHHH----.---------GGGTTHHHHHHHHHTSTTTS--TT--HHHHHHHHHHHHH CS
  Sec23_helical   1 Dqeavtvllakqaidkalesgladarealdtslvdllsayrkvgasg.sspsqlqlpeslklLPlyilallKspafrggnsvpaDervfalsllls 95 
                    D++a+++++ +q i  a ++++ ++re++++ +v++l +yrk++as+ ++++ql+lpeslklLPly+l+l K+ ++r g++v+aDer + +   ++
     KOO22881.1 464 DLDALLNVMLRQSIALARKQNMHQVRESVVNATVKMLYCYRKMCASAsTAAGQLILPESLKLLPLYTLSLTKNGVLRAGTDVRADERNALMAAGSR 559
                    89*******************************************9988889******************************************** PP

                    --HHHHH CS
  Sec23_helical  96 lpvdqll 102
                    +pv++++
     KOO22881.1 560 MPVASSV 566
                    ***9986 PP

>> Sec23_BS  Sec23/Sec24 beta-sandwich domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.4   0.0   1.5e-20   5.3e-17       1      94 [.     368     451 ..     368     453 .. 0.96

  Alignments for each domain:
  == domain 1  score: 62.4 bits;  conditional E-value: 1.5e-20
                 EEEEEEEEEE-TTEEEEEEESSSEECSTBESSEESECSESEEEEEEEETT--EEEEEEESSBTCTTSEEEEEEEEEEEETTSEEEEEEEEEEEE CS
    Sec23_BS   1 gfnatlevrtSkelkvsgliGncvslsnvsekeiGeggtsewklcsldpdstlavyfdideklksgkqayiQfatlYthssgerrlRVttvalp 94 
                 gf+++++ r+Sk+l v +++ +c+  +         g+  e++++ +d d+++av++++d+kl+ g  ay+Q+a+lYt+s g+rr+RV t+ l+
  KOO22881.1 368 GFEGVMRFRCSKGLSVDEYLMGCTPPP---------GQM-EVDVPGIDADHAFAVTLKHDDKLEDGAPAYVQCALLYTTSAGQRRVRVLTLGLQ 451
                 79************************9.........666.99************************************************9776 PP

>> zf-Sec23_Sec24  Sec23/Sec24 zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.1   3.0   3.7e-19   1.3e-15       1      39 []      49      87 ..      49      87 .. 0.99

  Alignments for each domain:
  == domain 1  score: 57.1 bits;  conditional E-value: 3.7e-19
  zf-Sec23_Sec24  1 PirCrrCraylNpfckidfggkrwiCnfCnhknevppeY 39
                    P+rC rCray+Npf+ + +gg++++Cn+C+h n++p++Y
      KOO22881.1 49 PVRCERCRAYVNPFFAFNDGGRSYTCNLCGHVNQTPRDY 87
                    9************************************99 PP

>> Gelsolin  Gelsolin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.7   0.0   1.3e-10   4.5e-07       5      65 ..     595     656 ..     593     673 .. 0.89

  Alignments for each domain:
  == domain 1  score: 29.7 bits;  conditional E-value: 1.3e-10
                 EEEBSSSGGGEETTSEEEEEESSEEEEEEHTT..SHHHHHHHHHHHHHHHHHCTTTTTSEEEE CS
    Gelsolin   5 pkvvklsssslesgdcyLLdngftiflWiGke..ssqeeknfaadlaaeldseerfplpelir 65 
                 p +  ls+++le+++++LLd    ++lWiG++  +  +e+++ + + + +d   r + p l++
  KOO22881.1 595 PSMTSLSVEKLEADGAFLLDDATALYLWIGRGvpAAFLEQLLRVRTLEGYD-CSRLRVPTLDN 656
                 666789********************************************9.66666666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (725 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       398  (0.0221987); expected 358.6 (0.02)
Passed bias filter:                      349  (0.0194657); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.57u 0.24s 00:00:00.81 Elapsed: 00:00:00.40
# Mc/sec: 5456.72
//
Query:       KOO22882.1  [L=174]
Description: act domain protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.4e-07   30.6   0.0    2.4e-06   27.4   0.0    2.2  2  ACT_6     ACT domain
    0.00026   21.5   0.0       0.83   10.3   0.0    2.2  2  ACT_4     ACT domain


Domain annotation for each model (and alignments):
>> ACT_6  ACT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.4   0.0   2.7e-10   2.4e-06       3      58 ..       5      60 ..       3      73 .. 0.89
   2 ?    0.9   0.0     0.052   4.7e+02      54      75 ..     149     170 ..     131     171 .. 0.75

  Alignments for each domain:
  == domain 1  score: 27.4 bits;  conditional E-value: 2.7e-10
       ACT_6  3 llitvtGpdrpGltasLtsvlaefgvnilDieqavihgrlsLgllvsgpedalarl 58
                ++ t++Gpdr G++ ++t+v+   g +i  ++ +++ g+++  ++v +p+++ + +
  KOO22882.1  5 IVATAFGPDREGVLTDFTRVVLGVGGTIGGSRAVTVSGTFTMSAVVFLPDEDHSLV 60
                789**********************************************8776644 PP

  == domain 2  score: 0.9 bits;  conditional E-value: 0.052
       ACT_6  54 alarlekaLlflakelgltvef 75 
                 ++  +ek++ +   +l+++v+f
  KOO22882.1 149 DILTVEKEFYEMGDKLDVDVKF 170
                 7778999************998 PP

>> ACT_4  ACT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.1   0.0   0.00022       1.9      13      61 ..      11      57 ..       3      59 .. 0.91
   2 !   10.3   0.0   9.3e-05      0.83       8      45 ..      91     129 ..      87     140 .. 0.89

  Alignments for each domain:
  == domain 1  score: 9.1 bits;  conditional E-value: 0.00022
       ACT_4 13 aedrkglLaditqviseekanivsvnaktrkkdglaeikitveVkdveh 61
                + dr g+L+d t+v+   ++ i   +a+t   +g+++++  v + d +h
  KOO22882.1 11 GPDREGVLTDFTRVVLGVGGTIGGSRAVT--VSGTFTMSAVVFLPDEDH 57
                67***************************..579*****9999988777 PP

  == domain 2  score: 10.3 bits;  conditional E-value: 9.3e-05
       ACT_4   8 rleveaedrkglLaditqviseekanivsvnaktrkk.d 45 
                 +l+++a+ + gl+a+i++ i++ + +  s+++++r++ d
  KOO22882.1  91 KLDIKANKEYGLIAQISDHIKSRGFSFASLRTHQRQSpD 129
                 699*******************************98652 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (174 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       319  (0.0177924); expected 358.6 (0.02)
Passed bias filter:                      303  (0.0169); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.38u 0.25s 00:00:00.63 Elapsed: 00:00:00.40
# Mc/sec: 1308.07
//
Query:       KOO22883.1  [L=23]
Description: hypothetical protein Ctob_004791, partial [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (23 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       475  (0.0264934); expected 358.6 (0.02)
Passed bias filter:                      331  (0.0184617); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.20s 00:00:00.53 Elapsed: 00:00:00.37
# Mc/sec: 187.27
//
Query:       KOO22884.1  [L=378]
Description: exodeoxyribonuclease iii [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    4.1e-14   52.6   1.5    7.4e-14   51.8   1.5    1.4  1  Exo_endo_phos  Endonuclease/Exonuclease/phosphatase family
    1.9e-08   33.9   0.1      9e-08   31.7   0.1    2.1  2  SAP            SAP domain


Domain annotation for each model (and alignments):
>> Exo_endo_phos  Endonuclease/Exonuclease/phosphatase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.8   1.5   8.2e-18   7.4e-14       1     233 []      76     366 ..      76     366 .. 0.73

  Alignments for each domain:
  == domain 1  score: 51.8 bits;  conditional E-value: 8.2e-18
                    EEEEESTGCHHHHTHHHHHHHHHHHHHHCTTSEEEEEEEBSCTCHHHHHHHHH.........TTCEEEEECCH....................... CS
                    xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.........xxxxxxxxxxx....................... RF
  Exo_endo_phos   1 ltwNvngqaspalgssrrsdrladlltaydaDvlgLQEvdddelsriplllal.........ggflgasstsp....................... 64 
                    +twNv g  +  l++ r  d l+ l   +d+Dv++LQE++ +e ++    + l         + ++ a+ +s+                       
     KOO22884.1  76 ATWNVAGL-RALLRNERGVDSLRRLA--TDCDVVLLQETKLQEMHVASVEAELldvlstgtsMPWRAAWASSTarlgyagvatlwtggrglgatva 168
                    7******7.77777778888888888..566***********998887777779999999974444444444466666666666666667777777 PP

                    ..........ECSSSTTSSEEEEEECSTEEEEEEEEEEETSSSSGCEEEEEEEEEEEEEEE................CCCHHGHHHHHHHHHHHHH CS
                    ..........xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx................xxxxxxxxxxxxxxxxxxx RF
  Exo_endo_phos  65 ..........tgggggggnggavlsrfpltslfrrtfiefndlvaalrreplaakleqlni................ashrdhdlvrdlqllalll 134
                                g  + ++g  +l + pl    +  +++                     +                 +++d + +  l ++++ +
     KOO22884.1 169 daaictpltvDPGHEADREGRTLLLQLPLSPSAQLAVVNV--------------------YtpnsgaelqrlkyrtsDDGWDGQFRAALLRAQQAP 244
                    7777777777677777777777777777755533333333....................044444444666666666789*************** PP

                    HHHHHHHHTTSEEEEEEE-SSSTSGGGBSCGHHHHHHCTTTH..........H..................SSCESCETTTTTTTTTTTEB-BEEE CS
                    xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..........x..................xxxxxxxxxxxxxxxxxxxxxxxxx RF
  Exo_endo_phos 135 qvealnadrgapvivaGDfNarpsdddsrvlrtrglalapap..........v..................glyllgggptptyvtraggsrlDri 202
                      +a++a+r ++v   GDfN++  d d+ ++++ + a                                   ++++ +++++ +++r+ g rlD+ 
     KOO22884.1 245 PSAAGSARRAQHVCAGGDFNVAVGDADFFNPDELRMAKQAGTtaeerasmrrYaeaplfmtdafrschphaTGQYTYWSQRARNRPRNRGLRLDYF 340
                    *********************666666666555555555444777666665505556667777889999*************************** PP

                    EEECHHHCCEEEEEEECCHHEEC...TSSCSSSB CS
                    xxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxx RF
  Exo_endo_phos 203 laspalalfrsgvlppplalvrr...ealtlSDH 233
                    l s+        +++   al++     +l +SDH
     KOO22884.1 341 LLSS--------SVMAADALRDVqhrHELEGSDH 366
                    ***4........5555555555566668889*99 PP

>> SAP  SAP domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.7   0.1     1e-11     9e-08       7      32 ..       2      27 ..       1      29 [. 0.94
   2 ?   -1.0   0.0      0.18   1.6e+03       3      14 ..      77      88 ..      75      90 .. 0.82

  Alignments for each domain:
  == domain 1  score: 31.7 bits;  conditional E-value: 1e-11
                HHHHHHHHHTT--TTS-HHHHHHHHH CS
         SAP  7 aeLKeeLkkrGLptsGkKaeLieRLk 32
                ++L+++L++rGLp+sG K++L +RL 
  KOO22884.1  2 KDLQALLRSRGLPVSGSKTVLLQRLA 27
                69**********************96 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 0.18
                T--HHHHHHHHH CS
         SAP  3 kltVaeLKeeLk 14
                ++ Va L+++L+
  KOO22884.1 77 TWNVAGLRALLR 88
                789999999998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (378 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       361  (0.020135); expected 358.6 (0.02)
Passed bias filter:                      273  (0.0152267); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.46u 0.23s 00:00:00.69 Elapsed: 00:00:00.39
# Mc/sec: 2907.28
//
Query:       KOO22885.1  [L=272]
Description: hypothetical protein Ctob_004785 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (272 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       278  (0.0155056); expected 358.6 (0.02)
Passed bias filter:                      218  (0.0121591); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.22s 00:00:00.60 Elapsed: 00:00:00.36
# Mc/sec: 2265.94
//
Query:       KOO22886.1  [L=1082]
Description: eukaryotic translation initiation factor 5b [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    5.6e-34  117.4   0.1      4e-33  114.6   0.0    2.2  2  GTP_EFTU     Elongation factor Tu GTP binding domain
    1.3e-17   63.9   2.0    1.6e-17   63.5   0.2    2.2  2  IF-2         Translation-initiation factor 2
    1.7e-10   41.2   5.2    4.4e-08   33.4   0.1    3.2  3  GTP_EFTU_D2  Elongation factor Tu domain 2
    1.4e-07   31.6   0.4    1.5e-06   28.3   0.0    2.7  2  MMR_HSR1     50S ribosome-binding GTPase
    0.00012   21.9   2.4    0.00045   20.1   2.4    2.0  1  GTP_EFTU_D4  Elongation factor Tu domain 4
    0.00055   20.1   0.0     0.0012   19.1   0.0    1.6  1  Roc          Ras of Complex, Roc, domain of DAPkinase
     0.0081   16.0   0.0      0.048   13.4   0.0    2.3  2  ATP_bind_1   Conserved hypothetical ATP binding protein
  ------ inclusion threshold ------
      0.012   15.5   0.6        8.8    6.2   0.1    3.3  2  RsgA_GTPase  RsgA GTPase
      0.018   14.6   0.0       0.15   11.6   0.0    2.4  2  Ras          Ras family
      0.071   13.4   0.8       0.76   10.0   0.0    2.6  2  AAA_22       AAA domain
      0.092   12.9   0.2       0.25   11.5   0.2    1.7  1  DHHA2        DHHA2 domain
       0.12   12.4   0.1       0.27   11.2   0.1    1.6  1  DUF3969      Protein of unknown function (DUF3969)


Domain annotation for each model (and alignments):
>> GTP_EFTU  Elongation factor Tu GTP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.1      0.58   8.7e+02     129     179 ..     243     294 ..     232     339 .. 0.66
   2 !  114.6   0.0   2.6e-36     4e-33       5     191 ..     480     688 ..     477     691 .. 0.81

  Alignments for each domain:
  == domain 1  score: -0.7 bits;  conditional E-value: 0.58
                 EESCGSTHHHHHHHHHHHHHHHHHH......HHHHHHHHHTTTTTEEEEEEBTTTTB CS
    GTP_EFTU 129 iNKmDrlkaelkeiveevkqklsrk......eeklekygekgekevpvvfgSalkge 179
                 i+K+D ++a+l+   ++   kl+++      +ek +k +         +  Sa+++e
  KOO22886.1 243 ITKIDAIIAQLQLRMDNFL-KLEERrrikreKEKAKKEE----LRAAGLLLSAKEKE 294
                 8999999888888888877.4433323322211111111....23334444555444 PP

  == domain 2  score: 114.6 bits;  conditional E-value: 2.6e-36
                 EEEEEESTTSSHHHHHHHHHHHTTSSCHHHHHHHHHSTHCHSHHH..HHH.TSCSSCEEEEEETTCSSEEEEEEEESSSGGGHHHHHHHHHT-SEEEEE CS
    GTP_EFTU   5 nigiighvDhGKtTLtdrLlyktgaiskkgekaeeervlDtlkeE..rer.giTiksaaisleketkkylinliDtPGHvdFskevirglrvlDgavlv 100
                  ++i+ghvD+GKt L+d++  ++ +  ++g  +++     + ++E  rer g  ++ ++i++    k   + +iDtPGH++Fs+  +rg + +D+a++v
  KOO22886.1 480 IVCIMGHVDTGKTKLLDNIRRTNVQEGEAGGITQQ-IGASFFPAEtlRERmGSLVEKKNITV----KVPGLMIIDTPGHESFSNLRSRGSSLCDLAIVV 573
                 69******************999999888877754.44455555511444133355555555....5999***************************** PP

                 EETTTBSTHHHHHHHHHHHHTTTEEEEEEESCGST...........HHHHHHHHHHHHHHHHHH.............HHHHHHHHHTTT.......... CS
    GTP_EFTU 101 vdaveGvepqteevlrlalkegvpiivfiNKmDrl...........kaelkeiveevkqklsrk.............eeklekygekge.......... 165
                 vd+++G epqt e l +++++++p+++++NK+Drl           +++l+ ++e  +++++++             +                     
  KOO22886.1 574 VDIMHGLEPQTIESLTMLRSKKTPFVIALNKVDRLygwstvkdrpfIESLEVQPEGTRSEFESRasqvllqlaeqglN----------Aelyyknkdfk 662
                 *********************************************999999999999999977766666666644442..........03444445666 PP

                 TTEEEEEEBTTTTBTHHHHHHHHHHH CS
    GTP_EFTU 166 kevpvvfgSalkgegvktllealvel 191
                 + v+++++Sa++gegv ++l +lv l
  KOO22886.1 663 EYVSLIPTSAITGEGVPDILMMLVLL 688
                 89******************999875 PP

>> IF-2  Translation-initiation factor 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.1       6.6   9.9e+03      57      86 ..      86     117 ..      76     119 .. 0.65
   2 !   63.5   0.2   1.1e-20   1.6e-17      14     104 ..     829     920 ..     816     921 .. 0.87

  Alignments for each domain:
  == domain 1  score: -3.3 bits;  conditional E-value: 6.6
                 HHHHHHHH..STEEEEEESSSCTHHHHHCCCC CS
        IF-2  57 sDvelasa..snaiiigFnvkvskkakklaek 86 
                 +D  la+a  ++a i g +++++++ kk+ ++
  KOO22886.1  86 DDALLAAAmaERAAITGEDLNAKNDKKKKKKN 117
                 45666666546699999888888877777665 PP

  == domain 2  score: 63.5 bits;  conditional E-value: 1.1e-20
                 CCEEEEEESSHHHHHHHHHHHHCTT.SSTEEEECEEEESSB-HHHHHHHHH...ST...EEEEEESSSCTHHHHHCCCCCTSEEEEESSHHHHHHHH CS
        IF-2  14 elnviikaDvqGsleAlkeaLekleseevkvkvihsgvGaitesDvelasa...sn...aiiigFnvkvskkakklaekegvkirlynvIYkliddv 104
                  ++v+  a++ GsleAl e+L++      k++v  +++G+i+++Dv++as     +   a+i++F+v+++k+ +++a++ +v+i+++++IY+l+d++
  KOO22886.1 829 GVGVYAIASTLGSLEALLEFLKTS-----KIPVSAVNIGPIHKKDVMKASImhqFKseyATILAFDVNLTKEGADMAKELNVRIFTAEIIYHLFDQF 920
                 566777799**************8.....7*******************9965511568************************************97 PP

>> GTP_EFTU_D2  Elongation factor Tu domain 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.0         4   5.9e+03      19      41 ..     481     504 ..     479     527 .. 0.75
   2 !   33.4   0.1   2.9e-11   4.4e-08       1      71 [.     717     792 ..     717     795 .. 0.86
   3 !    7.8   1.1    0.0028       4.3       5      61 ..     966    1029 ..     964    1033 .. 0.89

  Alignments for each domain:
  == domain 1  score: -2.3 bits;  conditional E-value: 4
                  EEEEC.TCTTSEEEEEEEEEEEEE CS
  GTP_EFTU_D2  19 vrilg.ndtskkeivtrissletf 41 
                  v i+g +dt+k++ +  i+++ + 
   KOO22886.1 481 VCIMGhVDTGKTKLLDNIRRTNVQ 504
                  568999999888866666665444 PP

  == domain 2  score: 33.4 bits;  conditional E-value: 2.9e-11
                  EEEEEEEEEESEEETTEEEEEEC.TCTTSEEEEEEEEEEEEETEEESEE..........ETTSEEEEEEEESSCCSGSSTTC CS
  GTP_EFTU_D2   1 GtvalgrvysGtlkkGdevrilg.ndtskkeivtrissletfhededea..........vaganaGvivaikgledaiivGd 71 
                  Gt+a++++ +Gtlk+Gd+++++g ++    + vtr++ l+t+  +++e+             ++ G+++ + +le  +++G+
   KOO22886.1 717 GTTADVILANGTLKRGDQIVMCGfSG----PVVTRVRELLTP-RPLREMrvktdylhheSIDGAMGIKICANNLEG-VVAGS 792
                  9**********************887....9***********.669*99999999999955556777777778888.77775 PP

  == domain 3  score: 7.8 bits;  conditional E-value: 0.0028
                   EEEEEESEEETTEEEEEECTCTTSEE.........EEEEEEEEEEETEEESEEETTSEEEEEEEES CS
  GTP_EFTU_D2    5 lgrvysGtlkkGdevrilgndtskke.........ivtrissletfhededeavaganaGvivaik 61  
                   ++ v +Gtl++G  + +   ++++k           ++r+ ++e +++++  + +g+ a v++ ++
   KOO22886.1  966 GMDVKEGTLRVGTPICV--ERKGQKDpttglqaylDIGRVIGIEINRKQVNMVKVGQSAAVKIDAV 1029
                   566899***********..88888888******************************999998765 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.3   0.1      0.75   1.1e+03      50     100 ..     234     306 ..     206     329 .. 0.60
   2 !   28.3   0.0   9.7e-10   1.5e-06       2     114 .]     481     604 ..     480     604 .. 0.77

  Alignments for each domain:
  == domain 1  score: -0.3 bits;  conditional E-value: 0.75
                 EEECGGC......................SS.HHHHHHHHHHHHHHHHCTSEEEEEEETTTTCSHHHHHHHHHH CS
    MMR_HSR1  50 lvDtpGl......................ie.gaseekglgkaflaleeadlillvvdaseeklkpldeeleel 100
                 l D pG+                      +e + + +++ +ka ++  +a  +ll  + ++eklk+++  l++l
  KOO22886.1 234 LEDFPGFesitkidaiiaqlqlrmdnflkLEeRRRIKREKEKAKKEELRAAGLLLSAK-EKEKLKRQEAFLASL 306
                 5578886555665665555554444432222122222233333333444555554444.245677666665555 PP

  == domain 2  score: 28.3 bits;  conditional E-value: 9.7e-10
                 EEEEESTTSSHHHHHHHHHTSTEEESSSTTSSSSEEEEEEE....ETTEE.................EEEEECGGCSSHHHHHHHHHHHHHHHHC.TSE CS
    MMR_HSR1   2 vaivGrpNvGKStLinaltgekaivsdkpgtTrdinegrvk....lkgke.................ielvDtpGliegaseekglgkaflalee.adl 78 
                 v+i+G+  +GK+ L+  + +++++ ++  g T++i    +         e                 + ++DtpG  e      ++++   +  + +dl
  KOO22886.1 481 VCIMGHVDTGKTKLLDNIRRTNVQEGEAGGITQQIGASFFPaetlR---ErmgslvekknitvkvpgLMIIDTPG-HE------SFSNLRSRGSSlCDL 569
                 89*****************999999999999999966655422320...1445555555666777779*******.54......3333333333348** PP

                 EEEEEETTTTCSHHHHHHHHHHHHHTTSEEEEEEES CS
    MMR_HSR1  79 illvvdaseeklkpldeeleelleeakkplilvlnk 114
                 +++vvd+  ++l+p+  e   +l+++k p++++lnk
  KOO22886.1 570 AIVVVDIM-HGLEPQTIESLTMLRSKKTPFVIALNK 604
                 ******99.77****99*9***999*********98 PP

>> GTP_EFTU_D4  Elongation factor Tu domain 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.1   2.4     3e-07   0.00045      17      83 ..     961    1042 ..     950    1045 .. 0.81

  Alignments for each domain:
  == domain 1  score: 20.1 bits;  conditional E-value: 3e-07
                   CCEEEEEEEEEEEEETT-EE.EETTE.E...........EEEEEEEEETTEEESEEETT-EEEEEEESS-...TTTS--TT- CS
  GTP_EFTU_D4   17 dpaivGvevlgGvikpgvkl.ikedGre...........vGeilqiqdkgkkleeakaGqevaisiegki...vGrqikegd 83  
                   dp++vG++v +G++++g ++ ++++G++           +G++  i+ ++k+++++k Gq+ a+ i+  +    Gr++++  
   KOO22886.1  961 DPILVGMDVKEGTLRVGTPIcVERKGQKdpttglqayldIGRVIGIEINRKQVNMVKVGQSAAVKIDAVTtvqFGRHFDHTY 1042
                   8******************94567887555555555666***************************9765425699988765 PP

>> Roc  Ras of Complex, Roc, domain of DAPkinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.1   0.0     8e-07    0.0012       2     119 ..     481     606 ..     480     607 .. 0.73

  Alignments for each domain:
  == domain 1  score: 19.1 bits;  conditional E-value: 8e-07
                 EEEESSTTSSHHHHHHCHCT-CCC-EE....ETTTTEEEEEEECGGSG..GCTTBT..TTTCEEEEEEEE-SGGCTTTT-HHHHCTSCEEEEEEEGHHH CS
         Roc   2 vvlvGdsgvGKtsllkrfvedkfseke....kstigvdfltkevtkik..gvendk..kvkkvklniWDtaGqerfrslhplylreaalailvydsrss 92 
                 v+++G   +GKt+ll+++ + +++e e    ++ ig++f+  e+ + +  ++ ++k  +vk   l i Dt G+e f++l++   +  +lai+v+d  + 
  KOO22886.1 481 VCIMGHVDTGKTKLLDNIRRTNVQEGEaggiTQQIGASFFPAETLRERmgSLVEKKniTVKVPGLMIIDTPGHESFSNLRSRGSSLCDLAIVVVDIMHG 579
                 6899****************999987633336999****997765433212222220033334579*****************************7655 PP

                 HCHHHHHHHHHHHCS.SS-EEEEEE-TT CS
         Roc  93 enlkeWlkelkkvag.kspvilvgnkiD 119
                  +  + +++l+  ++ k+p+++  nk+D
  KOO22886.1 580 LEP-QTIESLTMLRSkKTPFVIALNKVD 606
                 443.456777766541679999999999 PP

>> ATP_bind_1  Conserved hypothetical ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.4   0.0   3.2e-05     0.048      66     216 ..     516     653 ..     495     685 .. 0.66
   2 ?   -1.3   0.0         1   1.5e+03      51      86 ..     864     903 ..     842     919 .. 0.62

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 3.2e-05
  ATP_bind_1  66 galvvaleflresldwl..deelekeeddyllfDtPGQielfthseslakiveeLesefalvvvyLvDsqrltdptkfisgllsalsamlrlelPhvvv 162
                 ga  + +e+lre++  l  ++++  +   ++++DtPG   + ++++ ++        +    ++++vD     +p + i++    l ++ + ++P+v++
  KOO22886.1 516 GASFFPAETLRERMGSLveKKNITVKVPGLMIIDTPGHESFSNLRSRGS--------SLCDLAIVVVDIMHGLEPQT-IES----LTMLRSKKTPFVIA 601
                 66777788999999666333344223448********************........44456777777777777655.444....56666789****** PP

  ATP_bind_1 163 lnkfDllkek.lekeleffedvealslllekeeekykklaeaiaelleefalvlr 216
                 lnk+D l    + k+  f   +e+l+   e +++ +++ a+++   l e +l+ +
  KOO22886.1 602 LNKVDRLYGWsTVKDRPF---IESLEVQPEGTRSEFESRASQVLLQLAEQGLNAE 653
                 *****9873333333333...3334444444445555555555555555555544 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 1
  ATP_bind_1  51 itledvmed...lglgpngalvvaleflresl.dwldeel 86 
                 i+ +dvm+     ++++  a++ a+++  ++   ++++el
  KOO22886.1 864 IHKKDVMKAsimHQFKSEYATILAFDVNLTKEgADMAKEL 903
                 5666777766666788888888888865555445555555 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.2   0.1    0.0059       8.8      95     164 ..     474     556 ..     439     559 .. 0.65
   2 ?    5.8   0.0    0.0077        11      15      60 ..     566     609 ..     556     648 .. 0.82

  Alignments for each domain:
  == domain 1  score: 6.2 bits;  conditional E-value: 0.0059
                  HHCTTSEEEEECSTTSSHHHHHHHHCTT................-----S--------------SEEEEEETTTEEEESS-SSSS- CS
  RsgA_GTPase  95 ellkdktsvlvGqSGvGKStLinallpe................lelktgevseklgrGkhTTtavellelaegglliDtPGfrel 164
                  ++l++++++++G+   GK+ L+++++ +                     +    + + G    ++   ++++ g ++iDtPG +++
   KOO22886.1 474 DRLRSSIVCIMGHVDTGKTKLLDNIRRTnvqegeaggitqqigaSFFPAE--TLRERMGSLVEKKNITVKVP-GLMIIDTPGHESF 556
                  57899999**************9999974444444443222221111111..11223444444445555555.8888888887776 PP

  == domain 2  score: 5.8 bits;  conditional E-value: 0.0077
                  S--EEEEEEESTTTT--HHHHHHHHHHHHHTT-EEEEEEE-GGG-- CS
  RsgA_GTPase  15 NvdqllivvslkepelslnlldrfLvlaeekgiepvivlnKiDlle 60 
                   +d +++vv +  + l++++++  L+++ +k+ + vi+lnK+D l 
   KOO22886.1 566 LCDLAIVVVDIM-HGLEPQTIE-SLTMLRSKKTPFVIALNKVDRLY 609
                  578899999999.99****998.6999****************775 PP

>> Ras  Ras family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.1      0.64   9.5e+02     115     151 ..     262     298 ..     246     307 .. 0.86
   2 ?   11.6   0.0    0.0001      0.15      39     115 ..     534     606 ..     481     686 .. 0.77

  Alignments for each domain:
  == domain 1  score: -0.7 bits;  conditional E-value: 0.64
                 TGGGG-SS-HHHHHHHHHHHTSEEEEEBTTTTCTHHH CS
         Ras 115 DleekravsteegeelakelglkfletSAktnenvee 151
                  lee+r +++e+ ++  +el ++ l  SAk++e+++ 
  KOO22886.1 262 KLEERRRIKREKEKAKKEELRAAGLLLSAKEKEKLKR 298
                 57889*******99999999999********998864 PP

  == domain 2  score: 11.6 bits;  conditional E-value: 0.0001
                 EEEEETTEEEEEEEEEETTSGGGHHHHHHHHTTESEEEEEEETTBHHHHHTHHHHHHHHHHHSTTTSEEEEEEETTT CS
         Ras  39 keievdgkevkleiwDTAGqeefkslrelyyrdaegillvyditsresfenvkkwveeikrvaeenvpivLvGnKvD 115
                 ++ ++  k   l i DT G e f++lr+   + ++ +++v di +    ++    +e +++  ++++p+v+  nKvD
  KOO22886.1 534 EKKNITVKVPGLMIIDTPGHESFSNLRSRGSSLCDLAIVVVDIMHGLEPQT----IESLTMLRSKKTPFVIALNKVD 606
                 3334445556689******************************87654444....4445555555567777777777 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.5   0.2      0.45   6.8e+02      76     112 ..     168     214 ..     152     236 .. 0.71
   2 ?   10.0   0.0   0.00051      0.76       6      38 ..     479     520 ..     475     602 .. 0.68

  Alignments for each domain:
  == domain 1  score: 0.5 bits;  conditional E-value: 0.45
      AAA_22  76 eell.ealeqalrarav.ielliiDEaqhlr...s.....eealeeL 112
                 e l+ e+ ++al+++a+ +++ ++DEa +l+         e+al+ L
  KOO22886.1 168 EKLReEQARRALEEKAAiTAAELLDEATRLFkciDvlnlgEKALKRL 214
                 66777888888888888899999******975551433445555555 PP

  == domain 2  score: 10.0 bits;  conditional E-value: 0.00051
      AAA_22   6 gilvvtGesGtGKTtllrrlleqldeeakaee.........e 38 
                 +i++++G++ tGKT ll ++++++++e +a            
  KOO22886.1 479 SIVCIMGHVDTGKTKLLDNIRRTNVQEGEAGGitqqigasfF 520
                 7899********************998776655544444442 PP

>> DHHA2  DHHA2 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.2   0.00017      0.25      28      93 ..     242     311 ..     232     344 .. 0.75

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.00017
                 .ETTEEEEEEEEEES-HHHHHT.THHHHHHHHHHHH.HHT-SEEEEEEE.....ETTTEEEEEE....... CS
       DHHA2  28 geggvkvgiasvpvslsewleekrkgellaalekfaeerkldllvlmttfeeegdirrelllaal.....d 93 
                 +  +++ +ia++ + ++++l+ + + +++++ ek + +++l++++l+++ +e+++ +r+++++a+     +
  KOO22886.1 242 SITKIDAIIAQLQLRMDNFLKLEERRRIKREKEKAK-KEELRAAGLLLSAKEKEKLKRQEAFLASlgktdE 311
                 55678889*************988888999999999.999*********99*******7777774454431 PP

>> DUF3969  Protein of unknown function (DUF3969)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.1   0.00018      0.27      40      90 ..     210     262 ..     202     279 .. 0.76

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00018
     DUF3969  40 mlelieelelsdelveiihkgm.eLEDvesliPe.eLedsIdeielkclevLe 90 
                  l++++++e+s+++ve++  g  +LED+ ++    ++  +I++++l   + L+
  KOO22886.1 210 ALKRLDSAEVSADVVELVARGAqALEDFPGFESItKIDAIIAQLQLRMDNFLK 262
                 6899**************998537****8888777999999998876655444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1082 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1336  (0.0745161); expected 358.6 (0.02)
Passed bias filter:                      609  (0.0339673); expected 358.6 (0.02)
Passed Vit filter:                        62  (0.00345808); expected 17.9 (0.001)
Passed Fwd filter:                        14  (0.000780858); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.85u 0.29s 00:00:01.13 Elapsed: 00:00:00.41
# Mc/sec: 7852.61
//
Query:       KOO22887.1  [L=345]
Description: hypothetical protein Ctob_004789 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.3e-19   70.0  10.4    1.5e-09   37.8   0.5    3.3  3  SURF4            SURF4 family
     0.0085   16.7  20.9      0.014   16.0   5.0    3.5  3  DoxX             DoxX
  ------ inclusion threshold ------
       0.22   12.3   4.6        2.1    9.1   1.3    3.0  2  CDP-OH_P_transf  CDP-alcohol phosphatidyltransferase


Domain annotation for each model (and alignments):
>> SURF4  SURF4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.8   0.5   2.6e-13   1.5e-09      15     133 ..      19     143 ..       7     154 .. 0.82
   2 !    4.2   1.5    0.0046        28     187     224 ..     235     272 ..     180     284 .. 0.83
   3 !   32.7   0.0   9.6e-12   5.8e-08     228     264 ..     298     334 ..     292     337 .. 0.91

  Alignments for each domain:
  == domain 1  score: 37.8 bits;  conditional E-value: 2.6e-13
       SURF4  15 lrktkkylPtlarlllvatfleDglrllfqwsdqveyldkskklgyflatllvlvvllglligsllvvlrkkva......yavgvLlfivilqaiaYsl 107
                 l+++++ l  +ar+++v tfleD+lr l  +s q++ ++     g f  t l    +  +  gsll+ l   ++      + +++Ll       ++Y+ 
  KOO22887.1  19 LKRVHRKLQAVARVMIVITFLEDALRCLLTFSVQQQSMRIAGWQGEFWHTALPCASVAVQSSGSLLIALPISTSsswhgrIGCFILLGWCCFHPFMYHQ 117
                 567778899***********************99999998776777777778888888899999999887665511111156888888899999***** PP

       SURF4 108 ltdlklllrnlsvigglllllaesli 133
                  t+ +++l   ++iggll+ll+  ++
  KOO22887.1 118 QTNWEFVLETCTIIGGLLILLSHYML 143
                 *********************98775 PP

  == domain 2  score: 4.2 bits;  conditional E-value: 0.0046
       SURF4 187 valiilvviGfktklaalvLvllLfvlnlvlnafWtip 224
                   ++ l+++G k++ +al+L+l +  l  +   fW + 
  KOO22887.1 235 LYACSLLIVGIKSRGVALLLALAMLLLAAYNHPFWWYL 272
                 34688999*************99888888888888654 PP

  == domain 3  score: 32.7 bits;  conditional E-value: 9.6e-12
       SURF4 228 elrdflkYdffqtlsviGGLLlvvatGpGelsvDekk 264
                 ++ d  +Y ffq++s +G LLl+v  GpG+ls+De++
  KOO22887.1 298 TMADHQRYFFFQSVSTVGALLLLVVHGPGRLSMDEQQ 334
                 578999*****************************86 PP

>> DoxX  DoxX
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.9   0.3   0.00037       2.2       3      60 ..      28      92 ..      26     117 .. 0.63
   2 ?    0.4   3.1      0.16   9.9e+02      47      73 ..     124     150 ..     100     154 .. 0.82
   3 !   16.0   5.0   2.4e-06     0.014       3      81 ..     187     263 ..     185     267 .. 0.79

  Alignments for each domain:
  == domain 1  score: 8.9 bits;  conditional E-value: 0.00037
        DoxX  3 lllRlllgvlfiahGlqkltg.......fglegtaaslaalglpppellaylaalvElvggllll 60
                 ++R+++ ++f+   l  l +       ++++g ++++ ++ lp + +++   + + +++++ + 
  KOO22887.1 28 AVARVMIVITFLEDALRCLLTfsvqqqsMRIAGWQGEFWHTALPCASVAVQSSGSLLIALPISTS 92
                689*****************655554444445555555555555555555555555555555554 PP

  == domain 2  score: 0.4 bits;  conditional E-value: 0.16
        DoxX  47 laalvElvgglllllGlltRlaAlala 73 
                 +  ++ ++ggll+ll  +  laA+a a
  KOO22887.1 124 VLETCTIIGGLLILLSHYMLLAAAAAA 150
                 5556789*************9999987 PP

  == domain 3  score: 16.0 bits;  conditional E-value: 2.4e-06
        DoxX   3 lllRlllgvlfiahGlqkltgfglegtaaslaalglpppellaylaalvElvgglllllGlltRlaAlalavtllvatl 81 
                  ++R+l++++fi+  ++ + g  ++ +  +l++  ++ + ++  + +++ l +  ll++G+  R +Al+la+ +l ++ 
  KOO22887.1 187 AVGRVLICAVFIYYAFGRVHG-YVARSLSELGNADVL-TPIAQGASIIALLYACSLLIVGIKSRGVALLLALAMLLLAA 263
                 689*****************8.466777777777775.455556666666667778899***************98765 PP

>> CDP-OH_P_transf  CDP-alcohol phosphatidyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.1   1.3   0.00036       2.1       6      58 ..     128     217 ..      80     226 .. 0.82
   2 ?    3.0   0.1     0.029   1.7e+02      12      35 ..     253     321 ..     248     340 .. 0.73

  Alignments for each domain:
  == domain 1  score: 9.1 bits;  conditional E-value: 0.00036
                      HHHHHHHHHHHHHHGGGS-H...........................................HHHHHHHHHHHHHTTHHHHHHHHTT---HHH CS
  CDP-OH_P_transf   6 iTllrlllsvlailllltyyp.........................................lvlailllliasltDalDGklARrlnqvstlG 58 
                       T+++ ll++l+ ++ll++                                            vl +++++++++ + + G++AR l   s+lG
       KOO22887.1 128 CTIIGGLLILLSHYMLLAAAAaaasrlldgkritllpakavgpvvaeddplgkrahatqavgRVLICAVFIYYAF-GRVHGYVARSL---SELG 217
                      588888887777766655555888888888888888888888888888888888888887765555555566666.*********99...5566 PP

  == domain 2  score: 3.0 bits;  conditional E-value: 0.029
                      HHHHHHHHGGGS-H................................................HHHHHHHH CS
  CDP-OH_P_transf  12 llsvlailllltyyp..............................................lvlaillll 35 
                      l   la+lll++y++                                              +v a+lll+
       KOO22887.1 253 L-LALAMLLLAAYNHpfwwyltylrtdrtfkmegvaymegfevdaftmadhqryfffqsvsTVGALLLLV 321
                      3.46777788889888777777777777777777777777777777777777777777776666666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (345 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       583  (0.0325172); expected 358.6 (0.02)
Passed bias filter:                      310  (0.0172904); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.47u 0.22s 00:00:00.69 Elapsed: 00:00:00.39
# Mc/sec: 2667.81
//
Query:       KOO22888.1  [L=475]
Description: carbon catabolite repressor protein 4-like 2-like protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
      8e-25   87.7   0.1    1.1e-24   87.3   0.1    1.2  1  Exo_endo_phos  Endonuclease/Exonuclease/phosphatase family
     0.0032   17.7   0.1     0.0051   17.1   0.1    1.4  1  zf-C6H2        zf-MYND-like zinc finger, mRNA-binding


Domain annotation for each model (and alignments):
>> Exo_endo_phos  Endonuclease/Exonuclease/phosphatase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   87.3   0.1   1.2e-28   1.1e-24       1     233 []     148     464 ..     148     464 .. 0.89

  Alignments for each domain:
  == domain 1  score: 87.3 bits;  conditional E-value: 1.2e-28
                    EEEEESTG...........CHHHHTHHHHHHHHHHHHHHCTTSEEEEEEEBSCTCHHHHHHHHH.......TTCEEEEECCHECSSSTTSSEEEEE CS
                    xxxxxxxx...........xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.......xxxxxxxxxxxxxxxxxxxxxxxxx RF
  Exo_endo_phos   1 ltwNvngq...........aspalgssrrsdrladlltaydaDvlgLQEvdddelsriplllal.......ggflgasstsptgggggggnggavl 78 
                    lt+N++             a++al ++ r ++++ ++ +y+aD+++LQEv+ d+ ++++++ ++       + + + +      g +g+ +g+a++
     KOO22888.1 148 LTYNLLAEiyatpdaypycAAWALPWNFRRRNILREILTYRADIMCLQEVQADHFENFLAPELDkysysgvYKCKTREF----MGQYGKMDGCAIF 239
                    7*************************************************************99966666644444444....3778899****** PP

                    ECSTE.EEEEEEEEEETSSSSGCEEEEEEEEEEEEEEE................................CCCHHGHHHHHHHHHHHHHHHHHHHH CS
                    xxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx................................xxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Exo_endo_phos  79 srfpl.tslfrrtfiefndlvaalrreplaakleqlni................................ashrdhdlvrdlqllalllqvealna 141
                    +r+   t +++ +++  ++  a+ r  +++++l+ l                                  ++ +d++l + ++l +++ +v + + 
     KOO22888.1 240 YRRDKfTVMPQGQLDIEFNAIARQRHGNDKRTLNRLLKdnvaqvilfemtaphpssrrqlivanthinasPEFADVKLWQTQMLVQEVERVMQQQS 335
                    *****999***********************************************************************************99988 PP

                    HTTS..EEEEEEE-SSSTSGGGBSCGHHHHHHCTTTH................H..............SSCESCETTTTTTTTTTTEB-BEEEEEE CS
                    xxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx................x..............xxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Exo_endo_phos 142 drga..pvivaGDfNarpsdddsrvlrtrglalapap................v..............glyllgggptptyvtraggsrlDrilas 205
                    ++ +  p+++aGDfN+ p +d+  +l+ +g ++a++p                +               + l   +p +t+ t+ + ++lD+ +++
     KOO22888.1 336 GSLGaiPLVIAGDFNSLPGSDPHSLLALGGVQPAEDPagllaqlplrhslplrSamatvgahvnasaeSHELQKMEPPYTNFTSHFVGTLDYMWYT 431
                    77554499*****************************88887777766666550556667788899****************************** PP

                    C.HHHCCEEEEEEECCHHEEC........TSSCSSSB CS
                    x.xxxxxxxxxxxxxxxxxxx........xxxxxxxx RF
  Exo_endo_phos 206 p.alalfrsgvlppplalvrr........ealtlSDH 233
                      +l ++++++  +      +         +l +SDH
     KOO22888.1 432 YdRLSVGGLLEMVDDR----QvhentalpSPLFSSDH 464
                    9888888777774422....24477999999999999 PP

>> zf-C6H2  zf-MYND-like zinc finger, mRNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   0.1   5.7e-07    0.0051      24      46 ..       6      28 ..       1      29 [. 0.87

  Alignments for each domain:
  == domain 1  score: 17.1 bits;  conditional E-value: 5.7e-07
     zf-C6H2 24 kesfFCsqeCFkknwkkHkalHk 46
                ++s++C+ +CF ++w+ H a H+
  KOO22888.1  6 DNSYYCTVQCFVAAWPGHAAQHR 28
                459*****************996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (475 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       350  (0.0195214); expected 358.6 (0.02)
Passed bias filter:                      322  (0.0179597); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.47u 0.23s 00:00:00.70 Elapsed: 00:00:00.38
# Mc/sec: 3783.08
//
Query:       KOO22889.1  [L=359]
Description: beta-ig-h3 fasciclin [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
      8e-72  239.5   0.1    1.5e-34  119.0   0.0    2.1  2  Fasciclin      Fasciclin domain
  ------ inclusion threshold ------
        0.1   12.8   9.4        1.8    8.7   0.7    2.5  2  DUF211         Uncharacterized ArCR, COG1888
       0.11   12.8   0.0         16    5.9   0.0    2.5  2  DUF5495        Family of unknown function (DUF5495)
       0.19   12.1   0.1         10    6.5   0.0    2.3  2  Cloacin_immun  Cloacin immunity protein
       0.45   10.6   1.9         11    6.2   0.1    2.4  2  BRCT_3         BRCA1 C Terminus (BRCT) domain


Domain annotation for each model (and alignments):
>> Fasciclin  Fasciclin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  118.6   0.0   5.3e-38   1.9e-34       2     128 .]      31     155 ..      30     155 .. 0.96
   2 !  119.0   0.0   4.1e-38   1.5e-34       2     128 .]     171     295 ..     170     295 .. 0.96

  Alignments for each domain:
  == domain 1  score: 118.6 bits;  conditional E-value: 5.3e-38
                 GGHHHHHHHHTTTCCCCCTCSSSSEEEEEE-HHHHCCCHHHHHHHHHT..CHHHHHHHHHTTEEESSS-HHHHHHH.HEEEECCTTSSEEEEEEEGGTT CS
   Fasciclin   2 dlstfvsllekaglaeeLnkkdgglTvFaPtneAfaklppellaklln..dkkklkeiLkyHvvpetvsssalkka.setlatllegaklrvniekgng 97 
                  ++t++++l +agl++++ k+ g++TvFaPt+eAfaklp+++ ++l +  +k+kl+ iL+yHvv+++v++s ++++   +++t ++ga++++++   ++
  KOO22889.1  31 SFKTLAAALGAAGLVDTM-KSPGPFTVFAPTDEAFAKLPAGTVEELIKpeNKAKLTGILTYHVVSGKVMASTVVTMdGAKVPT-VNGAEITIKVG--TD 125
                 699***************.777**********************************************999999996678***.***********..99 PP

                 EEEETTEEEEEEEEEEESSEEEEEESS-TSX CS
   Fasciclin  98 tvtvngkarvvrsdieatngvihvidkvLlp 128
                  v+v+g a+vv++die++ngvihvid+v+lp
  KOO22889.1 126 GVMVDG-AKVVTTDIECDNGVIHVIDSVILP 155
                 9*****.**********************98 PP

  == domain 2  score: 119.0 bits;  conditional E-value: 4.1e-38
                 GGHHHHHHHHTTTCCCCCTCSSSSEEEEEE-HHHHCCCHHHHHHHHHT..CHHHHHHHHHTTEEESSS-HHHHHHH.HEEEECCTTSSEEEEEEEGGTT CS
   Fasciclin   2 dlstfvsllekaglaeeLnkkdgglTvFaPtneAfaklppellaklln..dkkklkeiLkyHvvpetvsssalkka.setlatllegaklrvniekgng 97 
                  ++t++++l +agl+e++ k++g++TvFaPt++Afaklp+++ ++ll+  +k+kl++iL+yHvv+++v++s ++++  +++ t ++ga+ ++++   ++
  KOO22889.1 171 SFKTLAAALGAAGLVETM-KSAGPFTVFAPTDDAFAKLPKGTVETLLEpeNKAKLAAILTYHVVSGKVMASTVVTMdGKKVGT-VNGAEATIKVG--KD 265
                 699***************.888**********************************************999999995577999.***********..99 PP

                 EEEETTEEEEEEEEEEESSEEEEEESS-TSX CS
   Fasciclin  98 tvtvngkarvvrsdieatngvihvidkvLlp 128
                  v+v++ a+vv++die++ngvihvid+v+lp
  KOO22889.1 266 GVMVDK-AKVVTTDIECSNGVIHVIDSVILP 295
                 9*****.**********************98 PP

>> DUF211  Uncharacterized ArCR, COG1888
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.7   2.5    0.0011       3.9      43      80 ..     116     154 ..      87     164 .. 0.73
   2 ?    8.7   0.7   0.00051       1.8      45      79 ..     258     293 ..     229     298 .. 0.80

  Alignments for each domain:
  == domain 1  score: 7.7 bits;  conditional E-value: 0.0011
                 SEEEEEEEEEESSE-HHH.HHHHHHCTT-EEEEEEEEEE CS
      DUF211  43 etenlkitieGenidyee.ieeaieelggvihSiDevva 80 
                    ++k+   G  +d  + +++ ie  +gvih iD v+ 
  KOO22889.1 116 AEITIKVGTDGVMVDGAKvVTTDIECDNGVIHVIDSVIL 154
                 44567777778888865516778*************985 PP

  == domain 2  score: 8.7 bits;  conditional E-value: 0.00051
                 EEEEEEEEESSE-HHH.HHHHHHCTT-EEEEEEEEE CS
      DUF211  45 enlkitieGenidyee.ieeaieelggvihSiDevv 79 
                  ++k+   G  +d  + +++ ie  +gvih iD v+
  KOO22889.1 258 ATIKVGKDGVMVDKAKvVTTDIECSNGVIHVIDSVI 293
                 678888888999976615678*************97 PP

>> DUF5495  Family of unknown function (DUF5495)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.4   0.0     0.013        46      55      74 ..      31      50 ..      23      57 .. 0.85
   2 ?    5.9   0.0    0.0044        16      55      78 ..     171     194 ..     125     198 .. 0.89

  Alignments for each domain:
  == domain 1  score: 4.4 bits;  conditional E-value: 0.013
     DUF5495 55 qfdsldaalgaanlmkclkl 74
                 f +l aalgaa l+  +k 
  KOO22889.1 31 SFKTLAAALGAAGLVDTMKS 50
                6999**********999986 PP

  == domain 2  score: 5.9 bits;  conditional E-value: 0.0044
     DUF5495  55 qfdsldaalgaanlmkclklihpl 78 
                  f +l aalgaa l+  +k   p+
  KOO22889.1 171 SFKTLAAALGAAGLVETMKSAGPF 194
                 6999************99987775 PP

>> Cloacin_immun  Cloacin immunity protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.1   0.0     0.033   1.2e+02      16      53 ..     113     151 ..     107     159 .. 0.81
   2 ?    6.5   0.0    0.0029        10      11      53 ..     248     291 ..     242     296 .. 0.84

  Alignments for each domain:
  == domain 1  score: 3.1 bits;  conditional E-value: 0.033
  Cloacin_immun  16 fvGeeyskDlGdDgslieklglplddn.innGafdvkke 53 
                    + G e+   +G Dg +++   +   d    nG+  v ++
     KOO22889.1 113 VNGAEITIKVGTDGVMVDGAKVVTTDIeCDNGVIHVIDS 151
                    67999************9987766554499999998775 PP

  == domain 2  score: 6.5 bits;  conditional E-value: 0.0029
  Cloacin_immun  11 kkteefvGeeyskDlGdDgslieklglplddn.innGafdvkke 53 
                    kk   + G e    +G+Dg +++k  +   d    nG+  v ++
     KOO22889.1 248 KKVGTVNGAEATIKVGKDGVMVDKAKVVTTDIeCSNGVIHVIDS 291
                    7778899****************998776665499999998765 PP

>> BRCT_3  BRCA1 C Terminus (BRCT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.6   0.2     0.019        68      23      68 ..     101     152 ..      91     156 .. 0.71
   2 ?    6.2   0.1    0.0029        11      24      67 ..     242     291 ..     226     295 .. 0.70

  Alignments for each domain:
  == domain 1  score: 3.6 bits;  conditional E-value: 0.019
      BRCT_3  23 eilklaGaavvkkekseaee......islgkldvvvtdsscpeevlkkaeql 68 
                 +++++ Ga+v + + +e         ++++  +vv td +c + v ++ +++
  KOO22889.1 101 TVVTMDGAKVPTVNGAEITIkvgtdgVMVDGAKVVTTDIECDNGVIHVIDSV 152
                 566666666644444443334566667788999********99999987765 PP

  == domain 2  score: 6.2 bits;  conditional E-value: 0.0029
      BRCT_3  24 ilklaGaavvkkekseaee......islgkldvvvtdsscpeevlkkaeq 67 
                 ++++ G +v + + +ea        ++++k +vv td +c++ v ++ ++
  KOO22889.1 242 VVTMDGKKVGTVNGAEATIkvgkdgVMVDKAKVVTTDIECSNGVIHVIDS 291
                 5555555553333333332345566779999************9998776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (359 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       463  (0.0258241); expected 358.6 (0.02)
Passed bias filter:                      255  (0.0142228); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.46u 0.24s 00:00:00.70 Elapsed: 00:00:00.41
# Mc/sec: 2628.57
//
Query:       KOO22890.1  [L=765]
Description: glycosyltransferase family 77 protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.6e-32  112.1   0.0    5.4e-32  111.5   0.0    1.3  1  Nucleotid_trans  Nucleotide-diphospho-sugar transferase
  ------ inclusion threshold ------
      0.023   14.7   0.6       0.05   13.6   0.6    1.5  1  TagF_N           TagF N-terminal domain, Type VI secretion sy
       0.15   12.7   1.1        1.1    9.9   2.0    2.1  2  CtnDOT_TraJ      Homologues of TraJ from Bacteroides conjugat
        3.7    6.5   7.2        6.5    5.7   7.2    1.3  1  FAM199X          Protein family FAM199X


Domain annotation for each model (and alignments):
>> Nucleotid_trans  Nucleotide-diphospho-sugar transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  111.5   0.0   1.2e-35   5.4e-32       3     212 .]     168     433 ..     166     433 .. 0.94

  Alignments for each domain:
  == domain 1  score: 111.5 bits;  conditional E-value: 1.2e-35
  Nucleotid_trans   3 lenllvvAlDeealerckelgvpvlyltsk.gkdsakkdeefksktykkmswrkvrlllellklGynvllsDvDvvWlrnpfpllky..edaDv 93 
                      +++++v+AlD+ +l+  + l+vpvl   s  g+ s+    +  + ++ km+++kv + lell+lG +vl+sDvD+vW+ +p++++ +  +  Dv
       KOO22890.1 168 HRQVIVAALDAPTLKVWRGLRVPVLDYSSSfGDTSDFRGIGADQARFRKMGAMKVAAFLELLELGRSVLVSDVDTVWTADPTSYF-TgaPPFDV 260
                      6899*******************8887777778888888999999****************************************.557***** PP

  Nucleotid_trans  94 lvssDsldgttadelknli........................NsGfffvrateatkallkkwaeelasesglw...Dqdvfnlllregaake. 159
                       v sD+l++  ade+k+                          N+G+ ++ +t+a+ka++ +w + l + +  w   Dq  fn+l+   + ++ 
       KOO22890.1 261 AVTSDCLSRE-ADENKDGKnprfhpsgvwfcghspgntfgatfNTGVLYLAPTPAAKAFTARWRDLLLAPTDDWhmeDQRGFNQLVLTNFYPTv 353
                      ********66.8899988889************************************************966666***************999* PP

  Nucleotid_trans 160 ...............................sglkvrvLdtalfvngkgyfvqvrdeeevktkkkpvavhanycs.gkedKlkrl 212
                                                       l ++ L+++ f++g+++fvq +  +e++t+     vh+++c  g ++Kl rl
       KOO22890.1 354 aadeaarpvsemdmtsptptfprgsvvfaanRSLLLHPLPARRFCSGHTFFVQQSGRRELCTN-----VHVTFCEgGIHGKLWRL 433
                      *******************************99********************9999999995.....*******8889998765 PP

>> TagF_N  TagF N-terminal domain, Type VI secretion system-associated
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.6   1.1e-05      0.05      15     112 ..      23     120 ..      18     141 .. 0.70

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 1.1e-05
                 ES--HHHHHHHHHHHHHHHHHHHHHHGG.GHHHHHHC--.-EEEEE-TTSSSSSEEEEEEE--B-TTS-B--EEEEEEE-TTB-HHHHHTS-SHHHHHH CS
      TagF_N  15 rrlprallaawdeWlqaglaalreelge.awkeaylaap.vwrFvlaagllgeqavaGvllpSvDrvgRyfPLtvvaaleaeeasaallaaaeewfeal 111
                  r++++ +a++ + +q+ +a+l ++ +  +++  +++a  v + + +a    + a + v+ +++DrvgR+ + +++   ++++   ++++a++++ + +
  KOO22890.1  23 IRAKTQHAAQFRRHMQDRMARLTKTVATsSTAGVFESATsVAELAASAASSAATAATSVVSAAADRVGRRHFQIAAGLSSEDAM--KKVLAEASLSADV 119
                 578889999************9988776488999*988616667777777889999*************997776666644443..3333333333333 PP

                 H CS
      TagF_N 112 e 112
                  
  KOO22890.1 120 A 120
                 3 PP

>> CtnDOT_TraJ  Homologues of TraJ from Bacteroides conjugative transposon
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   2.0   0.00025       1.1      31      65 ..      62      96 ..      36      97 .. 0.92
   2 ?   -3.4   0.0       3.6   1.6e+04      20      45 ..     679     704 ..     678     710 .. 0.77

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.00025
  CtnDOT_TraJ 31 kvnslassststalsaakagggmaadalgnaakri 65
                  v +la+s++s+a++aa++++++aad++g+ + +i
   KOO22890.1 62 SVAELAASAASSAATAATSVVSAAADRVGRRHFQI 96
                 6999*************************987765 PP

  == domain 2  score: -3.4 bits;  conditional E-value: 3.6
  CtnDOT_TraJ  20 vhAgGGgallqkvnslassststals 45 
                   +A G ++l +    +a  +++ +l 
   KOO22890.1 679 LEALGPNSLHHETAVIALDTAEDVLG 704
                  67888899998888888888887765 PP

>> FAM199X  Protein family FAM199X
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.7   7.2    0.0014       6.5     187     251 ..      29      95 ..      18     109 .. 0.69

  Alignments for each domain:
  == domain 1  score: 5.7 bits;  conditional E-value: 0.0014
     FAM199X 187 hsprqr.asstreswkrssyssastsgvsaasssnasmvssassstasvgssa.ansaanisrahsd 251
                 h+++ r   + r +    + +++st+gv  +++s a + +sa+ss+a++++s+ +++a  + r h +
  KOO22890.1  29 HAAQFRrHMQDRMARLTKTVATSSTAGVFESATSVAELAASAASSAATAATSVvSAAADRVGRRHFQ 95 
                 444443033444444556678899**************99999988888877635556668888864 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (765 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       644  (0.0359195); expected 358.6 (0.02)
Passed bias filter:                      396  (0.0220871); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.61u 0.27s 00:00:00.88 Elapsed: 00:00:00.41
# Mc/sec: 5538.65
//
Query:       KOO22891.1  [L=545]
Description: phenylalanyl-tRNA synthetase beta chain [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.2e-11   42.3   0.0    1.2e-10   41.4   0.0    1.5  1  tRNA_bind  Putative tRNA binding domain
     0.0056   16.8   0.0        2.6    8.2   0.0    2.3  2  SAM_2      SAM domain (Sterile alpha motif)


Domain annotation for each model (and alignments):
>> tRNA_bind  Putative tRNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.4   0.0   1.3e-14   1.2e-10       1      95 [.     138     248 ..     138     249 .. 0.83

  Alignments for each domain:
  == domain 1  score: 41.4 bits;  conditional E-value: 1.3e-14
                 EEEEEEEEEEEETTSST..EEEEEEEESSSSEEEEEESCTTTST.HHHHTTEEEEEETTSESE.......EETTEEESSEE-EEEC......CESSCEE CS
   tRNA_bind   1 lrvGkvleaeehpnadk..LlvlkvdvGeeeprqivsgaknvye.peelvakkvvvvanlkpk.......klrGveSeGMilsaee......ldekevg 83 
                 l v+ v+++ +hp+ +    +v++vd G++   ++v++a+n  +    ++a  + +va +k          +r v SeGM++++ e      ++    +
  KOO22891.1 138 LIVALVVDVRKHPDPKMtkASVCTVDAGDRGSVEVVCNATNLQPgITTVLAPLGGAVATPKGLpmeikpiSIRDVPSEGMLCGLGEiglckaGEPFPTE 236
                 5799********9866444*************************88888888888888777667889999***************98876544444577 PP

                 EEEESST--TTC CS
   tRNA_bind  84 ilelpadveaGe 95 
                 ++ l +d+e+G+
  KOO22891.1 237 VVLLSDDLEPGT 248
                 777777777776 PP

>> SAM_2  SAM domain (Sterile alpha motif)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.2   0.0   0.00029       2.6      34      62 ..     382     409 ..     372     412 .. 0.83
   2 !    6.4   0.0    0.0011       9.9       7      25 ..     514     533 ..     511     541 .. 0.82

  Alignments for each domain:
  == domain 1  score: 8.2 bits;  conditional E-value: 0.00029
                 HHHTTSCHHHHHHTTHHHHHHHHHHHHHH CS
       SAM_2  34 elllrlteedLkrlGitsvghrkkilkki 62 
                      l+++dLk+lG  svg  +++lk++
  KOO22891.1 382 ADAQDLSADDLKDLGF-SVGIKNRLLKAF 409
                 556789**********.99999****998 PP

  == domain 2  score: 6.4 bits;  conditional E-value: 0.0011
                 HHHHHHHHHTTT.GGGHHHH CS
       SAM_2   7 edvaeWLrsigl.kqytdnF 25 
                 + ++eWL+++g   qy++ +
  KOO22891.1 514 DALCEWLETTGVpSQYAQQY 533
                 679*******9998888765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (545 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       771  (0.043003); expected 358.6 (0.02)
Passed bias filter:                      333  (0.0185733); expected 358.6 (0.02)
Passed Vit filter:                        69  (0.00384851); expected 17.9 (0.001)
Passed Fwd filter:                        37  (0.0020637); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.91u 0.31s 00:00:01.22 Elapsed: 00:00:00.50
# Mc/sec: 3273.35
//
Query:       KOO22892.1  [L=258]
Description: alpha-n-acetylglucosamine transferase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    0.00042   19.8   0.0    0.00066   19.1   0.0    1.3  1  Mannosyl_trans3  Mannosyltransferase putative
  ------ inclusion threshold ------
      0.015   14.9   0.1      0.032   13.8   0.1    1.6  1  Glyco_transf_8   Glycosyl transferase family 8
       0.08   12.9   0.1       0.13   12.3   0.1    1.3  1  Nucleotid_trans  Nucleotide-diphospho-sugar transferase


Domain annotation for each model (and alignments):
>> Mannosyl_trans3  Mannosyltransferase putative
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.1   0.0   1.1e-07   0.00066      15     112 ..       3      99 ..       1     104 [. 0.79

  Alignments for each domain:
  == domain 1  score: 19.1 bits;  conditional E-value: 1.1e-07
  Mannosyl_trans3  15 lalrlIkvLralgnkLPIeivikkeelekefcekilpaaeepkqevwfvn.akcvlnedylgkefk.gfqnKalAllfssFeevllLDaDnvpl 106
                      l++rl+ +L+a  + LP+ +++  +e ++ f + +++  ++ + ++++ + ++  +    + ++f+ g+  K+  l ++ F+++++LD D+v+l
       KOO22892.1   3 LIVRLLLSLQAAASVLPVHLLLS-GERHEGFEQALVQ--QFWQLRLIIADaTRHRIRVPRWASAFHwGSFAKLSVLSLTQFRRIVVLDTDAVVL 93 
                      4579999***************9.8889999999999..566666666662233344444444455778888888999**************** PP

  Mannosyl_trans3 107 knpdkl 112
                      +n+d+l
       KOO22892.1  94 RNIDHL 99 
                      ****97 PP

>> Glyco_transf_8  Glycosyl transferase family 8
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.1   5.4e-06     0.032      91     223 ..      69     194 ..      42     211 .. 0.73

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 5.4e-06
  Glyco_transf_8  91 ylRlylpelfpkldkilylDaDvvvqgdlseLwdldlkgkvlaavedkrfkkylnksepliaenfkpeacyFnaGvllfdldew...rkenitet 182
                     +++l + +l  ++++i+ lD D vv +++++L +l+       +v            + ++++ ++ +   +n+G++++ +de    r + +++ 
      KOO22892.1  69 FAKLSVLSL-TQFRRIVVLDTDAVVLRNIDHLASLPSP----SFVYR---------FKCWAQKRSNLPIWEMNSGLMVLKPDEAlhgRMQALMNG 149
                     778888888.9************************999....33333.........444556666677778899999999987522234444444 PP

  Glyco_transf_8 183 likwlnlnekr.....tllklgdqdilnivfkgkvkeldkkynvlg 223
                       ++ + ++k      t    gdq  ++  f ++v+el+  yn++ 
      KOO22892.1 150 NGTTSKRDSKAlksiyTPSDPGDQS-VWRHFFSRVYELPVAYNTFK 194
                     4444444444355555666677777.56666677888888888765 PP

>> Nucleotid_trans  Nucleotide-diphospho-sugar transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.1   2.1e-05      0.13      70     190 ..      84     209 ..      77     230 .. 0.72

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 2.1e-05
  Nucleotid_trans  70 llsDvDvvWlrnpfpllkyedaDvlvssDsldgttadelknliNsGfffvrateatkallkkwaeelasesglwDqdvfnlllregaake.... 159
                      +++D+D+v lrn+  l   ++  ++    ++ ++ ++    ++NsG+++++++ea    ++ +++   + s+  D+++++ +     +      
       KOO22892.1  84 VVLDTDAVVLRNIDHLASLPSPSFVYRFKCWAQKRSNLPIWEMNSGLMVLKPDEALHGRMQALMNGNGTTSK-RDSKALKSIYTPSDPGDqsvw 176
                      789***********88866******999****88665555556************99999999998888766.566666666554333224444 PP

  Nucleotid_trans 160 ..sglkvrvLdtalfvngkgyfvqvrdeeevkt 190
                           +v+ L+ a+   +k+ fv v ++++v+ 
       KOO22892.1 177 rhFFSRVYELPVAYNTFKKTTFVRVMEWDHVYV 209
                      432233444555544446666666666666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (258 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       429  (0.0239277); expected 358.6 (0.02)
Passed bias filter:                      349  (0.0194657); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.43u 0.28s 00:00:00.71 Elapsed: 00:00:00.42
# Mc/sec: 1830.97
//
Query:       KOO22893.1  [L=158]
Description: ribosomal protein l11 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      8e-26   90.3   0.0    1.2e-25   89.8   0.0    1.3  1  Ribosomal_L11    Ribosomal protein L11, RNA binding domain
    1.8e-24   85.3   0.1    2.9e-24   84.7   0.1    1.3  1  Ribosomal_L11_N  Ribosomal protein L11, N-terminal domain


Domain annotation for each model (and alignments):
>> Ribosomal_L11  Ribosomal protein L11, RNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   89.8   0.0   1.3e-29   1.2e-25       2      70 .]      79     151 ..      78     151 .. 0.95

  Alignments for each domain:
  == domain 1  score: 89.8 bits;  conditional E-value: 1.3e-29
                    --SHHHHHHHHHTXSSXXSSTTTSXXEEEEHHHHHHHHHHHGGG...HT.XS.SHHHHHHHHHHHHCTTTEEE CS
  Ribosomal_L11   2 tPptsylLkkaagiekgsgkpgketvGtvslkqvyeIAkiKksd...ln.aalsleaavksilgtArsmGikV 70 
                    tP tsy+Lkkaag+ekg+++pg+etvG v+++qvyeIAk+K +d   +n +++sl+ +++ i+g+ArsmGi V
     KOO22893.1  79 TPHTSYFLKKAAGLEKGANRPGHETVGRVTVQQVYEIAKVKWQDlkkMNkEHISLRTLARGIVGSARSMGIVV 151
                    8******************************************966556899*******************98 PP

>> Ribosomal_L11_N  Ribosomal protein L11, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   84.7   0.1   3.2e-28   2.9e-24       4      65 .]      11      73 ..       6      73 .. 0.96

  Alignments for each domain:
  == domain 1  score: 84.7 bits;  conditional E-value: 3.2e-28
  Ribosomal_L11_N  4 vvkvvklrvpaGkAtpaPplGpaLGplGlnikkfckefnkaTkd.kkglripVkitvyqdrsf 65
                      ++ ++++vpaGkAtp Pp+G+aLG++Gl+ ++fck+fn++T+  k+g++ipV++  y dr+f
       KOO22893.1 11 LASRFRIIVPAGKATPQPPVGSALGQRGLKLMDFCKAFNDQTSIyKEGTPIPVRVKAYVDRTF 73
                     578899*************************************99****************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (158 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       484  (0.0269954); expected 358.6 (0.02)
Passed bias filter:                      438  (0.0244297); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.40u 0.24s 00:00:00.64 Elapsed: 00:00:00.40
# Mc/sec: 1183.82
//
Query:       KOO22894.1  [L=910]
Description: TBC domain-containing protein, partial [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      2e-44  151.8   0.0    2.7e-44  151.4   0.0    1.2  1  RabGAP-TBC  Rab-GTPase-TBC domain
    4.8e-08   32.7   0.6      1e-07   31.7   0.6    1.5  1  UBA_4       UBA-like domain
      2e-06   28.3   0.0    4.7e-06   27.1   0.0    1.6  1  WWE         WWE domain


Domain annotation for each model (and alignments):
>> RabGAP-TBC  Rab-GTPase-TBC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  151.4   0.0   4.5e-48   2.7e-44       2     214 ..     653     862 ..     652     863 .. 0.86

  Alignments for each domain:
  == domain 1  score: 151.4 bits;  conditional E-value: 4.5e-48
  RabGAP-TBC   2 elRgevWklllgyepevkrlkksekkqeksekeksklekseeskelsqIkkDvprtfp.esesfknkqgqnqLeriLkaysiynpevgYcqGmndivap 99 
                 ++R+++W+ l+g+++       s+  +++ +   +  e    + +++qI kD+prtfp +s+++    + ++L+r+L +y+ ynp vgYcq mn+iva+
  KOO22894.1 653 QHRPHLWMCLSGARD---LMLASSLPYRELVRLAESGEAPIGPGTMKQITKDLPRTFPqHSSYEIPTGLGEALKRVLVTYASYNPSVGYCQSMNFIVAV 748
                 69***********75...3333333333333333333444445679************666888888999***************************** PP

  RabGAP-TBC 100 lllvsldeeeaFwcfvsLlekyklrdlytsslpglkrklkvleellkkkdpklykhlkeegldlelfaikwfltlflrefpletvlrlwDlllege..k 196
                 +l ++ dee aFw++v+L+ +  + d++t +l+gl+ +   +  l+ + +p+l  h+ ++++ le+ a++w+l l+++++p  t+lr+wDlll+g    
  KOO22894.1 749 FL-LVADEEGAFWLLVALC-RTVVADYHTRDLSGLRIDTAAFSTLVAQALPDLNAHFVKLEVPLEILASQWWLSLYANVLPTPTLLRMWDLLLAGGgvD 845
                 **.999*************.9*********************************************************************888777555 PP

  RabGAP-TBC 197 fvllrvalailklleeel 214
                 + l+  +l++l+++e++l
  KOO22894.1 846 T-LVASSLSLLRRFEARL 862
                 5.6669999999998765 PP

>> UBA_4  UBA-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.7   0.6   1.7e-11     1e-07       4      39 ..      16      51 ..      14      52 .. 0.95

  Alignments for each domain:
  == domain 1  score: 31.7 bits;  conditional E-value: 1.7e-11
       UBA_4  4 iaqFqaiTGadeekArqlLeannWdLerAislyFds 39
                i+ F+++T+ad ++A +lL a+n++L++A++ +F++
  KOO22894.1 16 IELFKELTSADGATAERLLAASNGNLQQALDFFFEQ 51
                788*******************************95 PP

>> WWE  WWE domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.1   0.0   7.8e-10   4.7e-06       3      68 .]     123     187 ..     122     187 .. 0.86

  Alignments for each domain:
  == domain 1  score: 27.1 bits;  conditional E-value: 7.8e-10
                 EEEEEET-TCEEE--HHHHHHHHHHHHTT-SEEEHHHHTTSTTEEEETTT.TEEEETT.T--EEEEEE CS
         WWE   3 vWeweddggeWeeYspevsellEeayqkkkksvelsfsvagapYtvdfns.mvQtnkg.tgtsrrVrR 68 
                 vW++    + +++Y+p+v+++lE+a  ++k+ +++  +v+g+ Y+v + +   Qt++   +++r+VrR
  KOO22894.1 123 VWQVWLG-KAFRPYEPSVQQTLESALMAGKTVAKI--NVSGTDYVVSLHEpRKQTSAAdATKTRQVRR 187
                 6876666.49***************9999988865..55***********65999995599******9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (910 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       307  (0.0171231); expected 358.6 (0.02)
Passed bias filter:                      233  (0.0129957); expected 358.6 (0.02)
Passed Vit filter:                        12  (0.000669307); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.64u 0.26s 00:00:00.90 Elapsed: 00:00:00.44
# Mc/sec: 6167.32
//
Query:       KOO22895.1  [L=396]
Description: hypothetical protein Ctob_008200 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
     0.0063   16.3   1.4        1.1    9.2   0.0    3.0  3  TPR_1     Tetratricopeptide repeat
  ------ inclusion threshold ------
      0.018   15.3   1.4      0.018   15.3   1.4    3.6  4  TPR_12    Tetratricopeptide repeat
       0.27   11.7  12.2       0.38   11.3   1.5    3.8  3  TPR_19    Tetratricopeptide repeat
       0.77    7.9  13.9       0.96    7.6  13.9    1.1  1  Nop14     Nop14-like family
       0.87   10.4   3.9         37    5.3   0.2    3.7  3  TPR_6     Tetratricopeptide repeat
        1.8    8.9  13.6        5.3    7.4   0.1    4.4  5  TPR_2     Tetratricopeptide repeat
        2.2    7.6  14.3        2.9    7.2  14.3    1.1  1  SDA1      SDA1


Domain annotation for each model (and alignments):
>> TPR_1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.9   0.2       5.8   1.5e+04      12      25 ..     266     279 ..     264     282 .. 0.70
   2 !    5.0   0.0     0.009        23       9      31 ..     303     325 ..     297     327 .. 0.88
   3 !    9.2   0.0   0.00042       1.1       2      23 ..     336     357 ..     336     360 .. 0.89

  Alignments for each domain:
  == domain 1  score: -3.9 bits;  conditional E-value: 5.8
                 HHTT-HHHHHHHHH CS
       TPR_1  12 fklgkydeAleyye 25 
                 f  g y  A  +y 
  KOO22895.1 266 FAAGAYVAAAYAYT 279
                 66677777777775 PP

  == domain 2  score: 5.0 bits;  conditional E-value: 0.009
                 HHHHHTT-HHHHHHHHHHHHHHS CS
       TPR_1   9 nayfklgkydeAleyyekALeln 31 
                 +a+fklg+   A+++ + ALe+ 
  KOO22895.1 303 AAFFKLGQTLRAVDDANLALEIA 325
                 799******************95 PP

  == domain 3  score: 9.2 bits;  conditional E-value: 0.00042
                 HHHHHHHHHHHHTT-HHHHHHH CS
       TPR_1   2 kalynlGnayfklgkydeAley 23 
                 kal ++++a+f+lg+ d A  +
  KOO22895.1 336 KALLRRAAALFELGRIDAATRD 357
                 699***************9766 PP

>> TPR_12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.0       3.8   9.6e+03      68      74 ..     162     168 ..     156     176 .. 0.52
   2 ?   -1.4   0.0       1.2     3e+03      20      35 ..     213     228 ..     205     232 .. 0.63
   3 ?    5.0   1.4     0.012        30      26      72 ..     238     282 ..     235     287 .. 0.83
   4 ?   15.3   1.4     7e-06     0.018       2      64 ..     294     354 ..     293     359 .. 0.92

  Alignments for each domain:
  == domain 1  score: -3.0 bits;  conditional E-value: 3.8
      TPR_12  68 leealai 74 
                 leeal++
  KOO22895.1 162 LEEALRA 168
                 3333332 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 1.2
      TPR_12  20 deAlellekaleiarr 35 
                 + A+++  ++l++ ++
  KOO22895.1 213 ESARDYQMRVLQMLTA 228
                 5566666666666554 PP

  == domain 3  score: 5.0 bits;  conditional E-value: 0.012
      TPR_12  26 lekaleiarrllGpdhpltattlrnLgrlyralgryeeAlelleeal 72 
                 +  a  ++ +++G +    a+ +r+ g+ ++a+g y +A ++++  +
  KOO22895.1 238 FTSAASQIAEAYGIET--IAERMRAVGDDHFAAGAYVAAAYAYTAGI 282
                 5666666668889999..**********************9998665 PP

  == domain 4  score: 15.3 bits;  conditional E-value: 7e-06
      TPR_12   2 vatalnnlaavlrrlgrydeAlellekaleiarrllGpdhpltattlrnLgrlyralgryeeA 64 
                 ++ al+n+ a+ ++lg+   A +  + aleia +++ p       +l   + ++++lgr ++A
  KOO22895.1 294 LMHALVNRSAAFFKLGQTLRAVDDANLALEIAGEVYAPRT--QRKALLRRAAALFELGRIDAA 354
                 578999********************************99..8889999999999*****999 PP

>> TPR_19  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.4   0.1     0.021        55       9      25 ..     195     211 ..     193     223 .. 0.86
   2 ?    0.8   1.2      0.28   7.1e+02       2      31 ..     266     298 ..     265     323 .. 0.80
   3 ?   11.3   1.5   0.00015      0.38      24      66 ..     334     376 ..     312     377 .. 0.80

  Alignments for each domain:
  == domain 1  score: 4.4 bits;  conditional E-value: 0.021
      TPR_19   9 eAlalleqalqedpkna 25 
                 +A+a+le+a+q +pk +
  KOO22895.1 195 SAQAALEEAWQLYPKRE 211
                 699***********954 PP

  == domain 2  score: 0.8 bits;  conditional E-value: 0.28
      TPR_19   2 laegdyaeAlalleq...alqedpknaearllL 31 
                 +a+g y +A+ ++++   a +e+ + ae+  +L
  KOO22895.1 266 FAAGAYVAAAYAYTAgidAHTESGDRAELMHAL 298
                 689***********9777778888888887666 PP

  == domain 3  score: 11.3 bits;  conditional E-value: 0.00015
      TPR_19  24 naearllLAeallalgqldeAealLdalpeedpddaryasLlA 66 
                 +  a+l+ A al++lg++d+A + Ld+l+++d   +r+++ +A
  KOO22895.1 334 QRKALLRRAAALFELGRIDAATRDLDTLGDDDEGASRLRKKIA 376
                 55677889************************99888887776 PP

>> Nop14  Nop14-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.6  13.9   0.00037      0.96     316     416 ..      69     159 ..      56     263 .. 0.54

  Alignments for each domain:
  == domain 1  score: 7.6 bits;  conditional E-value: 0.00037
       Nop14 316 aDdldddfvleeeeeeeefglgkglkataeeeeeededdfeedddlveseseeeeeeeeedeeeeedeeeeeeeeededdlsdleseeeeeedeleeel 414
                  D  d d +le +++++++ l+++        e+ededd    +d+ e+e+  e  e+++d ee   e++e ++ +d+d   +le   +++edel+ e+
  KOO22895.1  69 SDAEDADLMLEGNDDDDDIPLEDNG------GEDEDEDDGLALEDN-EDEDCLEL-EDNDDVEELALEDNE-DHANDDDG-LELE--GNDDEDELQLEE 155
                 3444455556665566544433222......245555554444422.22222222.222222222222222.11112222.2222..222333322221 PP

       Nop14 415 ..le 416
                   le
  KOO22895.1 156 sqLE 159
                 1121 PP

>> TPR_6  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.0   0.0      0.67   1.7e+03      19      32 ..     196     209 ..     194     209 .. 0.91
   2 ?    3.2   0.1     0.067   1.7e+02       2      23 ..     304     325 ..     297     329 .. 0.74
   3 ?    5.3   0.2     0.014        37       2      24 ..     337     359 ..     336     364 .. 0.84

  Alignments for each domain:
  == domain 1  score: 0.0 bits;  conditional E-value: 0.67
                 HHHHHHHHHHH-TT CS
       TPR_6  19 AlealerlikeYPd 32 
                 A +ale+  + YP+
  KOO22895.1 196 AQAALEEAWQLYPK 209
                 899**********6 PP

  == domain 2  score: 3.2 bits;  conditional E-value: 0.067
                 HHHHHHHHHHHHHHHHHHHHHH CS
       TPR_6   2 AlyklalsyrklgdtdkAleal 23 
                 A++kl++ +r+ +d+  Ale+ 
  KOO22895.1 304 AFFKLGQTLRAVDDANLALEIA 325
                 7788888888855887887765 PP

  == domain 3  score: 5.3 bits;  conditional E-value: 0.014
                 HHHHHHHHHHHHHHHHHHHHHHH CS
       TPR_6   2 AlyklalsyrklgdtdkAleale 24 
                 Al+++a ++++lg+ d+A + l+
  KOO22895.1 337 ALLRRAAALFELGRIDAATRDLD 359
                 9**********99**99966665 PP

>> TPR_2  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.0       3.9     1e+04      17      23 ..     162     168 ..     158     170 .. 0.59
   2 ?   -1.8   0.1       1.9   4.7e+03      20      33 ..     196     209 ..     194     210 .. 0.83
   3 ?    1.0   0.8      0.23     6e+02       4      27 ..     258     281 ..     255     285 .. 0.82
   4 ?    7.1   0.1    0.0026       6.7       3      31 ..     297     325 ..     296     327 .. 0.93
   5 ?    7.4   0.1     0.002       5.3       2      24 ..     336     358 ..     335     361 .. 0.88

  Alignments for each domain:
  == domain 1  score: -2.8 bits;  conditional E-value: 3.9
       TPR_2  17 yeeAlea 23 
                 +eeAl+a
  KOO22895.1 162 LEEALRA 168
                 4566655 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 1.9
       TPR_2  20 AleafekAleldPn 33 
                 A +a+e+A +l+P+
  KOO22895.1 196 AQAALEEAWQLYPK 209
                 88899999899886 PP

  == domain 3  score: 1.0 bits;  conditional E-value: 0.23
       TPR_2   4 lynlGlayyklgdyeeAleafekA 27 
                   + G+ ++++g y  A+ a+ + 
  KOO22895.1 258 MRAVGDDHFAAGAYVAAAYAYTAG 281
                 5677999***********999875 PP

  == domain 4  score: 7.1 bits;  conditional E-value: 0.0026
       TPR_2   3 alynlGlayyklgdyeeAleafekAleld 31 
                 al n+  a +klg+  +A+++ + Ale++
  KOO22895.1 297 ALVNRSAAFFKLGQTLRAVDDANLALEIA 325
                 7899**********************986 PP

  == domain 5  score: 7.4 bits;  conditional E-value: 0.002
       TPR_2   2 ealynlGlayyklgdyeeAleaf 24 
                 +al +++ a+++lg+ + A +++
  KOO22895.1 336 KALLRRAAALFELGRIDAATRDL 358
                 6899**************98876 PP

>> SDA1  SDA1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.2  14.3    0.0011       2.9      73     175 ..      57     160 ..      54     243 .. 0.48

  Alignments for each domain:
  == domain 1  score: 7.2 bits;  conditional E-value: 0.0011
        SDA1  73 leLlekwkeeekkekre.......eeeedsddeddeedwevesddds...eedseggwidvesdeeeieesdesedeeeeeeeeeekeekeeeeeeeee 161
                 leLl    +e  +++++       ++++d d   ++++ e e++dd    e++++++  + e++++ +ee + +++e++ ++++  + e +       +
  KOO22895.1  57 LELLSPPAAESASDAEDadlmlegNDDDD-DIPLEDNGGEDEDEDDGlalEDNEDEDCLELEDNDD-VEELALEDNEDHANDDDGLELEGN-------D 146
                 77777777777777665556654322222.222222233333323334444444445555544444.222221222211111111111111.......1 PP

        SDA1 162 eeeeeeeeeeeeek 175
                 +e+e + ee++ e+
  KOO22895.1 147 DEDELQLEESQLED 160
                 22222222222111 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (396 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       681  (0.0379832); expected 358.6 (0.02)
Passed bias filter:                      410  (0.022868); expected 358.6 (0.02)
Passed Vit filter:                        60  (0.00334653); expected 17.9 (0.001)
Passed Fwd filter:                        20  (0.00111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.57u 0.27s 00:00:00.84 Elapsed: 00:00:00.43
# Mc/sec: 2752.13
//
Query:       KOO22896.1  [L=383]
Description: hypothetical protein Ctob_008201 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (383 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       408  (0.0227564); expected 358.6 (0.02)
Passed bias filter:                      283  (0.0157845); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.47u 0.25s 00:00:00.72 Elapsed: 00:00:00.43
# Mc/sec: 2648.75
//
Query:       KOO22897.1  [L=112]
Description: hypothetical protein Ctob_008202 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
  ------ inclusion threshold ------
        2.4    7.3   4.2        2.6    7.2   4.2    1.1  1  Herpes_LMP1  Herpesvirus latent membrane protein 1 (LMP1)


Domain annotation for each model (and alignments):
>> Herpes_LMP1  Herpesvirus latent membrane protein 1 (LMP1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.2   4.2   0.00014       2.6     279     348 ..      11      78 ..       4     104 .. 0.79

  Alignments for each domain:
  == domain 1  score: 7.2 bits;  conditional E-value: 0.00014
                  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
  Herpes_LMP1 279 lpqdpdntddngpqdpdntddngphdplphspsdsagndggppqlteevenkggdrgpplmtdgggghsh 348
                   p d d +d  g q  d  +d g  d +  + s +a         te v    gd+g  +  d   +   
   KOO22897.1  11 RPPDADAADAFGEQGEDMDEDTG--DDMGEATSSTAAASSKVTSSTERVAVAEGDEGGSSAGDAWRATGG 78 
                  5889999********99988888..7788999999999999999*************9999886433322 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (112 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       504  (0.0281109); expected 358.6 (0.02)
Passed bias filter:                      207  (0.0115455); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.35u 0.25s 00:00:00.60 Elapsed: 00:00:00.39
# Mc/sec: 864.49
//
Query:       KOO22898.1  [L=747]
Description: hypothetical protein Ctob_008203, partial [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.9e-17   63.2  13.4    3.4e-17   62.4  13.4    1.4  1  zf-UBR    Putative zinc finger in N-recognin (UBR box)


Domain annotation for each model (and alignments):
>> zf-UBR  Putative zinc finger in N-recognin (UBR box)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.4  13.4   1.9e-21   3.4e-17       2      70 .]     113     183 ..     112     183 .. 0.92

  Alignments for each domain:
  == domain 1  score: 62.4 bits;  conditional E-value: 1.9e-21
      zf-UBR   2 CtkvfkkgevvyrCltCsld.etsviCeeCfkaskHeghelvelstkrng..gvCdCGdeeawkeegfCkkh 70 
                 C ++f +g+++++C+tC+   et+viC++Cf+ ++H+gh++ +++++r+   g+CdCGde+aw ++gfCk+h
  KOO22898.1 113 CVTTFAQGDIIWKCKTCQVGdETCVICQACFQGGNHTGHDV-SFYISRQPngGCCDCGDESAWARSGFCKRH 183
                 9999**************97589******************.8877776557******************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (747 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       615  (0.034302); expected 358.6 (0.02)
Passed bias filter:                      321  (0.017904); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.58u 0.27s 00:00:00.85 Elapsed: 00:00:00.41
# Mc/sec: 5454.87
//
Query:       KOO22899.1  [L=282]
Description: hypothetical protein Ctob_008204, partial [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.3e-07   31.4   0.4    1.8e-06   27.7   0.4    2.6  1  Glyco_transf_8  Glycosyl transferase family 8


Domain annotation for each model (and alignments):
>> Glyco_transf_8  Glycosyl transferase family 8
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.7   0.4     1e-10   1.8e-06      85     192 ..     113     277 ..       1     282 [] 0.75

  Alignments for each domain:
  == domain 1  score: 27.7 bits;  conditional E-value: 1e-10
  Glyco_transf_8  85 ylsllnylRlylpel..fpkldkilylDaDvvvqgdlseLwdldlk.gkvlaaved....................................... 137
                     +  + n++R+ylp l  f  ld +   D+D+vvq+++s+L +++++ g ++aa                                          
      KOO22899.1 113 HHDPFNLIRFYLPYLgpFRWLDSLFLCDDDIVVQKSISML-EVPMGdGPIIAATCNgwlwaedcmrnepyyngkgwldfpatylgkdkahgysgc 206
                     445679********9445899****************976.9999988888888889************************************** PP

  Glyco_transf_8 138 ...............krfkkylnksepliaenfkpe.acyFnaGvllfdldewrkenitetlikwlnlnek 192
                                    +  ++ l  s +++ ++++ + +  +n+G+  ++l+ewr++n+t +  ++++ n +
      KOO22899.1 207 tqtaaesgnricqqdEFADTVLRWSLKFNGKELDVNaQPRWNFGLSRINLTEWRAQNMTHVFDNYMRANYE 277
                     ********87776654444455555566666665551579********************99999988765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (282 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       284  (0.0158403); expected 358.6 (0.02)
Passed bias filter:                      266  (0.0148363); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.26s 00:00:00.70 Elapsed: 00:00:00.42
# Mc/sec: 2011.72
//
Query:       KOO22900.1  [L=225]
Description: upf0420 protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.2e-52  177.2   0.6    5.7e-52  176.8   0.6    1.1  1  DUF647    Vitamin B6 photo-protection and homoeostasis


Domain annotation for each model (and alignments):
>> DUF647  Vitamin B6 photo-protection and homoeostasis
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  176.8   0.6   3.2e-56   5.7e-52       7     158 ..      66     218 ..      61     222 .. 0.96

  Alignments for each domain:
  == domain 1  score: 176.8 bits;  conditional E-value: 3.2e-56
      DUF647   7 laqrvldvfLPagYPdsVtedYleYqiydslqafassiasvlatqavLegvGVGdasasptaAlllwvlkDglgrlatilfasrlgtaldsecKryrlv 105
                 ++ +++++fLPagYP+sV ++Yl++q++d+lqa +s + s+l+t+a+L+g GVG++sasp+aA+++wvl+Dg+g++++++f+  +g ++d  +K++rl+
  KOO22900.1  66 VMLELRSIFLPAGYPHSVRPEYLRFQCFDTLQAACSYLRSILTTSAILRGAGVGEESASPMAAAITWVLRDGVGMFGSLVFSYAVGAQFDVSVKEWRLF 164
                 5667899******************************************************************************************** PP

      DUF647 106 advlndlamllellspal.pslfllvlslasvlkslcgvaagatkaslsahfAr 158
                 ad++nd++ +l++++p+  p+ f+++++l+ ++k +cg++agat+as++a f  
  KOO22900.1 165 ADLINDVGLTLDMFAPFGgPRGFVVIAALGAACKTICGMVAGATRASITALFCA 218
                 *****************966*****************************99964 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (225 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       332  (0.0185175); expected 358.6 (0.02)
Passed bias filter:                      252  (0.0140554); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.25s 00:00:00.65 Elapsed: 00:00:00.40
# Mc/sec: 1695.20
//
Query:       KOO22901.1  [L=246]
Description: hypothetical protein Ctob_008199 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.2e-41  140.5   0.3    5.4e-16   58.3   0.0    3.1  3  Mito_carr  Mitochondrial carrier protein
  ------ inclusion threshold ------
      0.066   12.9   0.0       0.14   11.9   0.0    1.6  1  ArgoL1     Argonaute linker 1 domain


Domain annotation for each model (and alignments):
>> Mito_carr  Mitochondrial carrier protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.0   0.0   7.2e-10   6.4e-06      48      93 ..      17      62 ..       1      66 [. 0.84
   2 !   53.4   0.0   2.1e-18   1.9e-14       9      92 ..      67     147 ..      64     150 .. 0.92
   3 !   58.3   0.0     6e-20   5.4e-16       4      89 ..     156     238 ..     153     244 .. 0.94

  Alignments for each domain:
  == domain 1  score: 26.0 bits;  conditional E-value: 7.2e-10
                HHHHHHHHHHHHHHHGGGTTHHHHHHHHHHHHHHHHHHHHHHHHHH CS
   Mito_carr 48 ildvlkkiykeeGlrglyrGllpnllrvapasalkfvlyetlkrll 93
                 ++++k i+ eeG+rg+y+ + p++  +++ ++++f++ye++ +l 
  KOO22901.1 17 PIQTVKCILDEEGVRGFYSSVKPTMQAQFVIKGATFLSYESVMTLT 62
                7899*************************************99886 PP

  == domain 2  score: 53.4 bits;  conditional E-value: 2.1e-18
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSTTTSCSSHHHHHHHHHHHHHH.HGGGTTHHHHHHHHHHHHHHHHHHHHHHHHH CS
   Mito_carr   9 llaGglagavatlvttPldvvKtrlqtqkksskksksaaildvlkkiykeeGl.rglyrGllpnllrvapasalkfvlyetlkrl 92 
                 +l+++++g+v +++ tP+++vK+ +q+++  + +s     l++ +k+++++Gl  +lyrG+++++lr +p + ++f +yet+   
  KOO22901.1  67 FLSSAACGIVCAIINTPFERVKVVMQSAECDAFAS----PLECAQKLVQQDGLfNALYRGFGVTVLREIPGTYVYFQAYETISAA 147
                 8999***********************99887664....9************9789*************************9876 PP

  == domain 3  score: 58.3 bits;  conditional E-value: 6e-20
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSTTTSCSSHHHHHHHHHHHHHHHGGGTTHHHHHHHHHHHHHHHHHHHHHH CS
   Mito_carr   4 svlkellaGglagavatlvttPldvvKtrlqtqkksskksksaaildvlkkiykeeGlrglyrGllpnllrvapasalkfvlyetl 89 
                 s+++ l+ G++aga++++ ++P+dvvKt +q++ + ++ ++   ++d+  +++++ G   ++ G++p+l r +++++ +f+++e l
  KOO22901.1 156 SWVAPLIGGAMAGAAGWISIYPVDVVKTSMQIDLDGGNREN---MIDATLRLWRKGGPFIFWDGITPKLARAVVNHGTTFLIFENL 238
                 678899******************************98876...**************************************9976 PP

>> ArgoL1  Argonaute linker 1 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   1.5e-05      0.14      23      36 ..      28      42 ..       2      47 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 1.5e-05
      ArgoL1 23 eawrGfyqSvRpt.q 36
                e +rGfy+Sv+pt q
  KOO22901.1 28 EGVRGFYSSVKPTmQ 42
                789*********944 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (246 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       412  (0.0229795); expected 358.6 (0.02)
Passed bias filter:                      338  (0.0188521); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.40u 0.26s 00:00:00.66 Elapsed: 00:00:00.40
# Mc/sec: 1855.72
//
Query:       KOO22902.1  [L=287]
Description: hypothetical protein Ctob_008197 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (287 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       364  (0.0203023); expected 358.6 (0.02)
Passed bias filter:                      301  (0.0167884); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.46u 0.25s 00:00:00.71 Elapsed: 00:00:00.43
# Mc/sec: 1986.30
//
Query:       KOO22903.1  [L=806]
Description: putative ubiquitin-conjugating enzyme e2 24-like protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.3e-23   83.2   0.0    2.1e-23   82.5   0.0    1.3  1  UQ_con    Ubiquitin-conjugating enzyme


Domain annotation for each model (and alignments):
>> UQ_con  Ubiquitin-conjugating enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   82.5   0.0   1.2e-27   2.1e-23       3     125 ..     588     722 ..     586     735 .. 0.87

  Alignments for each domain:
  == domain 1  score: 82.5 bits;  conditional E-value: 1.2e-27
                 HHHHHHHHHSTTTTEEEEEEETTEECEEEEEEEB.TTSTTTTEEEEEEEE--TTTTTS--EEEESS..T-SCTTBETTSBB-CGGGSTTT.......-- CS
      UQ_con   3 qkelkelakkkpsgisaklvddenlfewkvlikgpedtpYeggvFklelefpedYPlkpPkvkfvt..kifHPnvdksGevcldiLkeek.......Ws 92 
                 qk+ + l+   p+gi++   +  +++ ++vli+gp++tpY+++vF +++++p+++P +pP v++ +  + ++Pn++++G+vcl++L +++       W+
  KOO22903.1 588 QKQWRLLQAGLPEGIYVVACSG-RVDLMSVLITGPPGTPYQDAVFIFDVQLPPEFPQQPPLVHYLShgQRINPNLYENGKVCLSLLGTWTghqscelWN 685
                 6777788888999999999996.9*****************************************8779******************8888889999** PP

                 T.TSHHHHHHHHHHHHH..HS-.-TTS-SSHHHHHHH CS
      UQ_con  93 p.altlesvllsiqsLl..aep.npesplnkeaakll 125
                 p ++t+ ++llsiq+L+  + p  +e +++k+ ++  
  KOO22903.1 686 PdTSTVLQILLSIQALVlcEMPyFNEAGYDKQLGTVE 722
                 *99***********99876777778888888776655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (806 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       601  (0.0335211); expected 358.6 (0.02)
Passed bias filter:                      433  (0.0241508); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.68u 0.28s 00:00:00.96 Elapsed: 00:00:00.46
# Mc/sec: 5311.29
//
Query:       KOO22904.1  [L=147]
Description: hypothetical protein Ctob_008729 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    0.00042   20.5   0.0    0.00056   20.1   0.0    1.2  1  Anthrax_toxA  Anthrax toxin LF subunit


Domain annotation for each model (and alignments):
>> Anthrax_toxA  Anthrax toxin LF subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.1   0.0   3.1e-08   0.00056      31      79 ..      74     123 ..      68     143 .. 0.80

  Alignments for each domain:
  == domain 1  score: 20.1 bits;  conditional E-value: 3.1e-08
                   EE---HHHHHHHHCT-E.E--TT--S--BSSCCCTTS-BSSCCGSTTTTT CS
  Anthrax_toxA  31 iRpVnklaTsLiaeGva.TKglkvkgKSsnWGpqagfipvdqklSKlagr 79 
                   +Rp  + a  ++  G a  K l++kgKS+  G+ agf+p+ q     ++r
    KOO22904.1  74 FRPTGREALYMMMTGRAkGKALSIKGKSARKGLLAGFVPFLQISEEAHKR 123
                   88999999999999987469*******************98854444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (147 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       256  (0.0142785); expected 358.6 (0.02)
Passed bias filter:                      245  (0.013665); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.33u 0.27s 00:00:00.60 Elapsed: 00:00:00.39
# Mc/sec: 1143.90
//
Query:       KOO22905.1  [L=199]
Description: camp-dependent protein kinase regulatory subunit [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    7.2e-19   67.7   0.1    1.1e-18   67.1   0.1    1.2  1  cNMP_binding  Cyclic nucleotide-binding domain
     0.0002   20.7   1.3    0.00037   19.8   0.4    2.0  2  EF-hand_1     EF hand
    0.00069   19.0   0.1     0.0023   17.4   0.1    1.9  1  EF-hand_5     EF hand
     0.0033   17.8   0.3      0.015   15.8   0.2    2.1  2  EF-hand_7     EF-hand domain pair
     0.0038   17.0   0.7      0.012   15.4   0.7    1.9  1  EF-hand_6     EF-hand domain
     0.0094   15.8   1.7      0.012   15.4   0.8    1.7  2  EF-hand_8     EF-hand domain pair


Domain annotation for each model (and alignments):
>> cNMP_binding  Cyclic nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.1   0.1   3.7e-22   1.1e-18       3      84 ..      82     165 ..      81     169 .. 0.90

  Alignments for each domain:
  == domain 1  score: 67.1 bits;  conditional E-value: 3.7e-22
                   EE-TT-EEE-TTSB.-SEEEEEEES-EEEE.EEETTS.EEEEEEE-TTEEESHHHHHHTS--SSEEEESSTEEEEEEEHHHHHH CS
  cNMP_binding   3 sfkagevifrqGdp.adslyivlsGevrvy.rlsedgkevvlavlgpGdlfGelalltgeprtatvvAltdsellalprddfle 84 
                   +fk g+ +f+qGd  ad++yiv+ G++ v+ r +e+g++++la l++G++fGelal+++epr atv+A ++   l ++ ++f+ 
    KOO22905.1  82 NFKEGDQVFEQGDVaADKVYIVMNGTATVVrRDEESGEQKTLANLSQGACFGELALIRNEPRFATVTATSQLCTLYISVQQFEI 165
                   699**********9779************94556666779*******************************9999999999975 PP

>> EF-hand_1  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.8   0.4   1.2e-07   0.00037       5      26 ..       1      22 [.       1      25 [. 0.92
   2 ?   -3.2   0.0       2.8   8.4e+03      16      23 ..     157     164 ..     157     168 .. 0.75

  Alignments for each domain:
  == domain 1  score: 19.8 bits;  conditional E-value: 1.2e-07
                HHHHHTTTSSSEEEHHHHHHHH CS
   EF-hand_1  5 iFrefDkDgdGkIdfeEfkell 26
                +F+++D Dg+G ++++Ef  ll
  KOO22905.1  1 MFKKVDLDGSGDLTWDEFEYLL 22
                9*****************9877 PP

  == domain 2  score: -3.2 bits;  conditional E-value: 2.8
                 EEEHHHHH CS
   EF-hand_1  16 kIdfeEfk 23 
                 +I+ ++f 
  KOO22905.1 157 YISVQQFE 164
                 79999886 PP

>> EF-hand_5  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.4   0.1   7.7e-07    0.0023       4      22 ..       1      19 [.       1      22 [. 0.93

  Alignments for each domain:
  == domain 1  score: 17.4 bits;  conditional E-value: 7.7e-07
                HHHHH-SS-SSCE-HHHHH CS
   EF-hand_5  4 tFqaiDlNgDGkIskeELk 22
                +F+++Dl+g+G ++ +E++
  KOO22905.1  1 MFKKVDLDGSGDLTWDEFE 19
                5*****************6 PP

>> EF-hand_7  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.2   4.9e-06     0.015      49      69 ..       1      21 [.       1      22 [. 0.93
   2 ?   -1.8   0.0       1.5   4.6e+03      18      36 ..     157     181 ..     154     193 .. 0.53

  Alignments for each domain:
  == domain 1  score: 15.8 bits;  conditional E-value: 4.9e-06
   EF-hand_7 49 lfkefDtdkdGvisfdEFlkl 69
                +fk++D+d++G +++dEF++l
  KOO22905.1  1 MFKKVDLDGSGDLTWDEFEYL 21
                59****************986 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 1.5
   EF-hand_7  18 yldkeellrllrkifqga......g 36 
                 y+++++++ ++ ++++ +       
  KOO22905.1 157 YISVQQFEIFVGSLKEVFkeqvagY 181
                 6666666655554444444444443 PP

>> EF-hand_6  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.7   4.2e-06     0.012       6      27 ..       2      23 ..       1      29 [. 0.90

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 4.2e-06
   EF-hand_6  6 FklfDkdgdGkidaeElrkalr 27
                Fk+ D dg+G ++++E+  +l 
  KOO22905.1  2 FKKVDLDGSGDLTWDEFEYLLD 23
                *****************99886 PP

>> EF-hand_8  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.8   4.2e-06     0.012      31      48 ..       1      18 [.       1      23 [. 0.97
   2 ?   -3.5   0.0       3.4     1e+04      25      35 ..      68      78 ..      60      80 .. 0.58

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 4.2e-06
   EF-hand_8 31 lfrefDtdgdGkisfeEF 48
                +f+++D+dg+G ++++EF
  KOO22905.1  1 MFKKVDLDGSGDLTWDEF 18
                9****************9 PP

  == domain 2  score: -3.5 bits;  conditional E-value: 3.4
   EF-hand_8 25 eeevdilfref 35
                + +++ +++++
  KOO22905.1 68 PTDLHLMLDRM 78
                55555565554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (199 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       459  (0.025601); expected 358.6 (0.02)
Passed bias filter:                      399  (0.0222544); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.42u 0.26s 00:00:00.68 Elapsed: 00:00:00.42
# Mc/sec: 1422.59
//
Query:       KOO22906.1  [L=355]
Description: hypothetical protein Ctob_008728 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (355 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       386  (0.0215294); expected 358.6 (0.02)
Passed bias filter:                      332  (0.0185175); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.46u 0.23s 00:00:00.69 Elapsed: 00:00:00.40
# Mc/sec: 2639.77
//
Query:       KOO22907.1  [L=700]
Description: histone acetyltransferase-like protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.4e-19   68.6   0.1    7.9e-19   67.5   0.1    1.7  1  Radical_SAM_C    Radical_SAM C-terminal domain
    2.1e-15   57.5   0.0    5.7e-15   56.1   0.0    1.8  1  Radical_SAM      Radical SAM superfamily
    3.2e-06   27.1   0.1    6.9e-05   22.8   0.1    2.6  3  Acetyltransf_10  Acetyltransferase (GNAT) domain
    3.6e-06   27.2   3.6    2.7e-05   24.4   2.2    2.8  2  Acetyltransf_1   Acetyltransferase (GNAT) family
  ------ inclusion threshold ------
      0.033   14.6   0.1      0.086   13.3   0.1    1.8  1  Acetyltransf_7   Acetyltransferase (GNAT) domain


Domain annotation for each model (and alignments):
>> Radical_SAM_C  Radical_SAM C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.5   0.1   2.2e-22   7.9e-19       2      81 ..     353     432 ..     352     433 .. 0.98

  Alignments for each domain:
  == domain 1  score: 67.5 bits;  conditional E-value: 2.2e-22
  Radical_SAM_C   2 dgvKlypllvikgTeLaelyksgeykplsleeyvdlvadilellppdirvhRltgdipkelliagpwhknlreliekrlk 81 
                    d++K+yp++v+  T + ++ ++gey+p+ ++ +v l+++++++++p+ir++R+++dip + ++ g   +nlre ++++++
     KOO22907.1 353 DQWKIYPTQVVPWTIIKKWHEAGEYEPYATDALVGLLMEVKSRVHPWIRLNRVVRDIPIQYVSGGLDVPNLREDVLSEMA 432
                    89*************************************************************************99996 PP

>> Radical_SAM  Radical SAM superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.1   0.0   1.6e-18   5.7e-15       7     159 ..     144     336 ..     142     344 .. 0.87

  Alignments for each domain:
  == domain 1  score: 56.1 bits;  conditional E-value: 1.6e-18
                  ESS--TTTSCCTT...............HHHHHHHHHHHHHHHHHHHHHHHHHTTSEEEEEESSTGGGSTTHHHHHHHHHHTC............... CS
                  xxxxxxxxxxxxx...............xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx............... RF
  Radical_SAM   7 CnlrCsfCarpet...............vrregrgrslsveeileevkelkaekgvkevilgggepllypdfvellerlakla............... 74 
                  C+ +C +C++                   +++ ++    +++ + ++  + +  ++ e++++gg+   yp+ +++++ +                   
   KOO22907.1 144 CAWNCYYCPNEPGqprsylhdepavkraNENGFDPVLQFTDRAATLAMNG-HPVDKIELLVLGGTWASYPHAYQEAFVRDLFFaantfwqrtkrprls 240
                  ************************99977777777777788888888888.67778899999999999977777777666655788888888888888 PP

                  ............CCTEEEEEEECSSCHGHHHHHHHHHTT-SEEEEEEBSSSHHHHHHHHTCTSHHHHHHHHHHHHHHTTSETEEEEEEEBTTTSHHH CS
                  ............xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Radical_SAM  75 ............vpgiritvetngtlpdeeklerllelgvdrvslgleaaddekvlklmnrghtfeevlealeklreagikrvvdrivglpGendee 159
                              v+ i +t+et + ++d   l+rl+++g++rv+lg++++dd+  l+++nrgh++ +v  al +l++a +k+ v+ ++ lp  + e+
   KOO22907.1 241 lleeqtinetarVKIIGLTLETRPDTIDAAELRRLRRYGCTRVQLGVQHIDDR-LLRKINRGHGVAHVAVALARLKDACFKVDVHLMPQLPSATLED 336
                  8888889999999999999999999999*************************.************************9998888888888888765 PP

>> Acetyltransf_10  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.8   0.0      0.12   4.3e+02      33      65 ..      89     118 ..      57     120 .. 0.71
   2 ?   -2.8   0.0       1.6   5.6e+03      30      49 ..     470     489 ..     459     493 .. 0.70
   3 !   22.8   0.1   1.9e-08   6.9e-05      62     111 ..     581     629 ..     579     634 .. 0.90

  Alignments for each domain:
  == domain 1  score: 0.8 bits;  conditional E-value: 0.12
  Acetyltransf_10  33 llvaeeggkivGvielrdgshisllfVdpeyrg 65 
                      l+v+    ++vG +e++ ++++s l V+++ ++
       KOO22907.1  89 LHVY---HRLVGLGEIEPSEQLSSLLVKKSSKS 118
                      3333...589******9999*******998765 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 1.6
  Acetyltransf_10  30 ealllvaeeggkivGvielr 49 
                      e++l   + ++k++G+++lr
       KOO22907.1 470 EHFLSFETADDKLIGFLRLR 489
                      445555566799***99885 PP

  == domain 3  score: 22.8 bits;  conditional E-value: 1.9e-08
  Acetyltransf_10  62 eyrgqGigkaLleaveeeaekdgikleltvnaspyavpfYeklGFkavge 111
                      + ++ G+g++L+ ++e++a+ +g   ++ v a    ++fY+klG++  ++
       KOO22907.1 581 ASQHVGLGTRLMAEAERRARAHGFL-RVAVIAGVGSRGFYRKLGYHLDER 629
                      56999**************999888.*******************98765 PP

>> Acetyltransf_1  Acetyltransferase (GNAT) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.0       1.6   5.6e+03      87     102 ..     273     288 ..     267     296 .. 0.78
   2 !   24.4   2.2   7.4e-09   2.7e-05      44     117 .]     536     624 ..     442     624 .. 0.58

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 1.6
                     HHHHHTTESEEEEEEE CS
  Acetyltransf_1  87 erareegikkivlave 102
                     +r+r+ g++++ l v+
      KOO22907.1 273 RRLRRYGCTRVQLGVQ 288
                     789999****999876 PP

  == domain 2  score: 24.4 bits;  conditional E-value: 7.4e-09
                     EEEEEEEEEEET.......TSTTEEEEEEEEE...........SGGGTTSSHHHHHHHHHHHHHHHTTESEE.EEEEETTEHHHHHHHHHTTE CS
  Acetyltransf_1  44 liGfisllkipd.......ekggvayieslaV...........speyrgkGlGsaLlealeerareegikki.vlaveedndaairlYeklGF 117
                     ++G  ++    +       e +g a i++++V           + + ++ GlG++L+ ++e+rar +g+ ++ v       ++++++Y+klG+
      KOO22907.1 536 VVGATGVVVGEEeehqpfvELRGAALIREVHVygqliatedkgAHASQHVGLGTRLMAEAERRARAHGFLRVaV----IAGVGSRGFYRKLGY 624
                     22222222222233344443344444446666889999999888888**********************66534....4799******88**8 PP

>> Acetyltransf_7  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.1   2.4e-05     0.086      35      75 ..     581     625 ..     523     626 .. 0.72

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 2.4e-05
                     GGTTSSHHHHHHHHTT.....SEEEEEEEEETHH...HHHHHHHHTTEE CS
  Acetyltransf_7  35 eyrgkGiGraLleaae.....kgiileqlelnae...kaikfYeklGFe 75 
                     + +  G+G++L++ ae     +g+    + +       +++fY+klG++
      KOO22907.1 581 ASQHVGLGTRLMAEAErraraHGFL-R-VAV--IagvGSRGFYRKLGYH 625
                     46777*******8522334456632.2.112..12336799******95 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (700 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       341  (0.0190195); expected 358.6 (0.02)
Passed bias filter:                      282  (0.0157287); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.58u 0.25s 00:00:00.83 Elapsed: 00:00:00.43
# Mc/sec: 4886.68
//
Query:       KOO22908.1  [L=718]
Description: anoctamin-8-like isoform 2 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.5e-88  297.7   6.5    1.3e-57  195.7   0.5    2.1  2  Anoctamin    Calcium-activated chloride channel
    0.00013   21.8   0.0     0.0074   16.0   0.0    2.2  2  Anoct_dimer  Dimerisation domain of Ca+-activated chloride-ch


Domain annotation for each model (and alignments):
>> Anoctamin  Calcium-activated chloride channel
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  195.7   0.5   1.5e-61   1.3e-57       1     263 [.     237     569 ..     237     572 .. 0.77
   2 !  106.1   1.0   2.2e-34     2e-30     323     446 ..     571     700 ..     567     702 .. 0.86

  Alignments for each domain:
  == domain 1  score: 195.7 bits;  conditional E-value: 1.5e-61
   Anoctamin   1 IrdyFGekiAlYFawlgfytsallppavlGlllflyglatitlfdneltvvfalfmviWatlflelWkrreaelaykWgtsdfeeeeeprpefrgelkr 99 
                 IrdyFGe+ AlYFa+l++ t++ll+p ++Gl+++l g + + ++dn+l + +++f+++W+ +f + W+r+ea+la++W+++dfe+ e+ rp+frgel r
  KOO22908.1 237 IRDYFGERLALYFAFLQHLTRSLLLPGLVGLFVVL-GSFWYGTVDNPLAPAYSVFIMVWTPWFAKTWRREEAQLAFRWNVEDFEATEHVRPQFRGELAR 334
                 9*******************************999.345567889****************************************************** PP

   Anoctamin 100 ....................espvtgeeefyy.ppwkrrlfrllvslplvllliclavvgvlilrcla..............lqelvssvke....... 156
                                       pv    +f   ++ +r lf +lv +p+v+ ++++ v  ++++r +                        e       
  KOO22908.1 335 gfysrdedfievdehdrlsaAAPVI--RRFSAgQRQRRTLFSYLVIVPFVT-MVMIGVATLFAYRSVLmmslssthaillgvA--------Eldfdsda 422
                 ******9999888777776522342..233333555589999999999995.4344333344443222222223333333330........25555555 PP

   Anoctamin 157 ........................llsflptvlnlvlililnevykklaiwltdlEnhrtqseyekslilKvflfqfvnsylslfyiaFvkg....... 224
                                         l s ++++l+   +++ n +y  la++l+++En+rt ++ye++l+lK+ +f+fvnsy+ lfyiaF++        
  KOO22908.1 423 ssipalqlegrgvkvklaswyavtLGSCMGSALYSAWLVFTNYLYGLLAVKLNNWENYRTVTAYEDALVLKTSCFYFVNSYATLFYIAFLEAsqvsllp 521
                 55555555555565565555545455599999999999999*************************************************986665555 PP

   Anoctamin 225 .....kflkypgkylr.............rseecdeegcleelkeqLaiilvtkqll 263
                                +              ++   +  c+ el++ L +++++ qll
  KOO22908.1 522 gmteyC---------HdashfdytaeyikGTHGGFNPFCMAELSTLLSSLVIFSQLL 569
                 444440.........15555555666655888899999***************9998 PP

  == domain 2  score: 106.1 bits;  conditional E-value: 2.2e-34
   Anoctamin 323 qfGyvtlFsaafPlapllallnniieirldafklvtelrRpvperaesiGiWqkilealgvlavitnallialtsd.p.......ekdteqylsvlaar 413
                 + GyvtlF++afP+a++++++  + eir+da+kl++ ++Rp    a++iG W k+l ++g+++++tn+ li +ts+ +            ++++   ++
  KOO22908.1 571 KLGYVTLFAPAFPIAAVVCYFSFMAEIRTDAYKLLRNTQRPRYAGAQDIGSWHKVLAVMGIVSIFTNMGLIGFTSTvSsgalpisV-FGVFEIN-ADNQ 667
                 68************************************************************************987345554421.4444444.4556 PP

   Anoctamin 414 lafvvvlehvvlllkyliavlipdipkwvkeei 446
                 ++f++v+eh++l + y+i++l+pd+ ++v+  +
  KOO22908.1 668 VFFLFVCEHLMLGVHYVISALLPDVTAEVAIAR 700
                 666666**********************99876 PP

>> Anoct_dimer  Dimerisation domain of Ca+-activated chloride-channel, anoctamin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.0   8.2e-07    0.0074       7      86 ..      61     143 ..      57     160 .. 0.78
   2 !    5.3   0.0    0.0016        15     130     198 ..     148     214 ..     144     234 .. 0.84

  Alignments for each domain:
  == domain 1  score: 16.0 bits;  conditional E-value: 8.2e-07
  Anoct_dimer   7 rkiDfVLvyeeek.....eeekekeeekkekReeFeknLeeeGLelekeeeeekkkklvFvkihaPwevlcryAEilklkmplkk 86 
                   + D +Lv+ +++     +++  +++e + +R++  ++++  GLel +e ++  + + v +ki aP ++l + AE+ ++   l++
   KOO22908.1  61 YEYDIILVHPNDNpgsglRSQLIEKTEAALRRRTIVSRMRFIGLELSREVSR--SGEKVLLKIAAPDRLLEEFAERTSMEKRLET 143
                  567999999998888887444455666788******************9887..888899****************999988883 PP

  == domain 2  score: 5.3 bits;  conditional E-value: 0.0016
  Anoct_dimer 130 pfsreklelFlikdkdtfFtsaqRsrivyeILkrtkykekkkkkvGierLlaegvYtaayPLHdgeyks 198
                   ++re ++lF    + t+F+s +R+r++   L+      +   ++ ++  +++gv ta  P H+ ++ s
   KOO22908.1 148 DYTRETQKLFARAASGTLFSSLERQRLIISALELGLS--EGGCDLDLSLEIERGVLTAVVPVHEPTIGS 214
                  6899************************999998777..566888888889999999999999987654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (718 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       502  (0.0279993); expected 358.6 (0.02)
Passed bias filter:                      285  (0.015896); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.62u 0.30s 00:00:00.92 Elapsed: 00:00:00.46
# Mc/sec: 4660.75
//
Query:       KOO22909.1  [L=311]
Description: ankyrin repeat protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.9e-31  107.9  12.7    2.8e-09   37.4   0.2    4.1  5  Ank_2            Ankyrin repeats (3 copies)
    1.7e-27   95.1  10.8    6.5e-07   29.5   0.0    7.4  8  Ank_5            Ankyrin repeats (many copies)
    2.2e-13   49.1  10.0       0.84   10.4   0.1    7.6  7  Ank_3            Ankyrin repeat
    4.3e-13   49.1  19.3      0.089   13.3   0.0    7.9  8  Ank              Ankyrin repeat
    2.9e-11   43.6   6.8     0.0013   19.3   0.1    4.7  5  Ank_4            Ankyrin repeats (many copies)
    4.4e-08   33.8   0.3        7.2    7.5   0.0    6.8  7  DUF3349          Protein of unknown function (DUF3349)
    0.00012   22.4  20.7       0.66   10.3   0.1    6.7  7  DUF5047          Domain of unknown function (DUF5047)
    0.00083   20.0   1.2        3.1    8.5   0.1    3.3  3  DUF2877          Protein of unknown function (DUF2877)
  ------ inclusion threshold ------
      0.017   15.5   0.1         77    3.7   0.0    4.6  6  DUF5492          Family of unknown function (DUF5492)
      0.085   12.5   0.0        6.2    6.4   0.0    3.3  5  AMNp_N           Bacterial AMP nucleoside phosphorylase N-ter
       0.18   11.6   1.1         78    3.2   0.0    4.4  6  DUF2976          Protein of unknown function (DUF2976)
       0.97    9.2  12.2        4.4    7.1   2.4    4.6  4  Sulfotransfer_4  Sulfotransferase domain


Domain annotation for each model (and alignments):
>> Ank_2  Ankyrin repeats (3 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.8   0.1   3.8e-09   5.7e-06      11      73 ..       7      83 ..       1      94 [. 0.72
   2 !   37.4   0.2   1.9e-12   2.8e-09       1      75 [.      66     156 ..      66     165 .. 0.74
   3 !   36.4   0.2   3.8e-12   5.7e-09       1      75 [.     101     191 ..     101     200 .. 0.72
   4 !   22.8   0.0   6.8e-08    0.0001      11      64 ..     148     214 ..     142     217 .. 0.70
   5 !   18.2   0.1   1.9e-06    0.0029      27      73 ..     204     263 ..     195     274 .. 0.69

  Alignments for each domain:
  == domain 1  score: 26.8 bits;  conditional E-value: 3.8e-09
       Ank_2 11 elvklLl...egadpn..k.ngktaLhyAakngnlei.vklLleh.......adndgrtpLhyAars.ghleivklLl 73
                 +v+ Ll    +a  +  + n + +LhyA++++  e+ vk+Ll++       +d+d +  Lh+Aa+   +  +vklL+
  KOO22909.1  7 AVVQALLtayPEAA-KrkDyNWRLPLHYAIEHQASEAvVKALLAAypkaveaQDRDSMHLLHWAAQGkASAAVVKLLF 83
                58999997742322.33336779********99777647****95577877677999999*****6543679999998 PP

  == domain 2  score: 37.4 bits;  conditional E-value: 1.9e-12
       Ank_2   1 LhlAakngnl.elvklLl..egadpn.k..ngktaLhyAakng.nleivklLleh.......adndgrtpLhyAars..ghleivklLlek 75 
                 Lh+Aa+ +++  +vklL   +   ++ k    + +LhyAak+  ++ +v++Ll++        d d r pLh+Aa +   +  ivk Ll+ 
  KOO22909.1  66 LHWAAQGKASaAVVKLLFtaYPEAVKkKdaSSRLPLHYAAKQSaSVAVVEALLAAypeaakkKDADQRLPLHWAATCvaPSKAIVKALLDA 156
                 8*****87453899999877333333323568*********87355889****9556676666688*********98764679*****954 PP

  == domain 3  score: 36.4 bits;  conditional E-value: 3.8e-12
       Ank_2   1 LhlAakn.gnlelvklLl...egadpn..k.ngktaLhyAak..ngnleivklLleh....ad..ndgr.tpLhyAarsg..hleivklLlek 75 
                 Lh+Aak+  +  +v+ Ll    +a  +  + + + +Lh+Aa   + ++ ivk+Ll++    a+  + g+ tpLhyAa  g    ++v  Ll  
  KOO22909.1 101 LHYAAKQsASVAVVEALLaayPEAA-KkkDaDQRLPLHWAATcvAPSKAIVKALLDAypaaARekDMGMrTPLHYAA-AGevCVDVVTELLAA 191
                 8*****746779******8752222.2233678*****999944457799*****966877334655666*******.564568999999954 PP

  == domain 4  score: 22.8 bits;  conditional E-value: 6.8e-08
       Ank_2  11 elvklLl..egadpn.k..ngktaLhyAakng.nleivklLleh.......adndgrtpLhyAarsg 64 
                  +vk Ll  + a ++ k    +t+LhyAa +  ++++v  Ll++        d   + pLh+A+ +g
  KOO22909.1 148 AIVKALLdaYPAAAReKdmGMRTPLHYAAAGEvCVDVVTELLAAypdavreKDMMSKLPLHWAVHYG 214
                 4899999874444444234459******998756788977777447775444466899*****9877 PP

  == domain 5  score: 18.2 bits;  conditional E-value: 1.9e-06
       Ank_2  27 ktaLhyAakng....nlei.vklLleh.......adndgrtpLhyAarsghl.eivklLl 73 
                 k +Lh+A+++g    + e+ vkl++++        d+  + pLh+Aa++  +  i+++Ll
  KOO22909.1 204 KLPLHWAVHYGaacdSSEAvVKLMIAAypeaaqkKDKLSKLPLHWAAEKRASdAILNVLL 263
                 579999999985554334448****9556676555577999******9964405666777 PP

>> Ank_5  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.7   0.0      0.48   7.1e+02      28      46 ..       5      24 ..       3      24 .. 0.86
   2 !   16.0   0.1   7.7e-06     0.011       1      37 [.      12      50 ..      12      52 .. 0.83
   3 !   29.5   0.0   4.4e-10   6.5e-07       1      56 []      47     104 ..      47     104 .. 0.88
   4 !   12.8   0.0   7.7e-05      0.11      17      47 ..      98     130 ..      93     134 .. 0.75
   5 !   20.5   0.1   2.9e-07   0.00043      18      56 .]     134     175 ..     129     175 .. 0.91
   6 !   10.8   0.0   0.00032      0.49      18      39 ..     170     193 ..     167     205 .. 0.85
   7 !    6.4   0.2    0.0077        12      18      29 ..     205     216 ..     188     240 .. 0.83
   8 !   19.7   0.0   5.1e-07   0.00076       3      51 ..     229     279 ..     227     280 .. 0.85

  Alignments for each domain:
  == domain 1  score: 0.7 bits;  conditional E-value: 0.48
       Ank_5 28 aadvvrlLl.argadlnltd 46
                ++ vv+ Ll a++++++ +d
  KOO22909.1  5 SLAVVQALLtAYPEAAKRKD 24
                5789**********998776 PP

  == domain 2  score: 16.0 bits;  conditional E-value: 7.7e-06
       Ank_5  1 LlehgpadvnrldgggntpLhvAakygaadvvrlLl..a 37
                Ll + p++  r+d ++ +pLh+A++++a++ v + l  a
  KOO22909.1 12 LLTAYPEAAKRKDYNWRLPLHYAIEHQASEAVVKALlaA 50
                56666778889999*****************99888544 PP

  == domain 3  score: 29.5 bits;  conditional E-value: 4.4e-10
       Ank_5   1 LlehgpadvnrldgggntpLhvAakygaadvvrlLl..argadlnltdsrGltaldlA 56 
                 Ll++ p +v ++d+++++ Lh+Aa + a+  v +Ll  a++++ + +d++ +++l++A
  KOO22909.1  47 LLAAYPKAVEAQDRDSMHLLHWAAQGKASAAVVKLLftAYPEAVKKKDASSRLPLHYA 104
                 78888999*****************555555555555********************9 PP

  == domain 4  score: 12.8 bits;  conditional E-value: 7.7e-05
       Ank_5  17 ntpLhvAak.ygaadvvrlLl.argadlnltds 47 
                  +pLh+Aak   +  vv+ Ll a++++++ +d+
  KOO22909.1  98 RLPLHYAAKqSASVAVVEALLaAYPEAAKKKDA 130
                 48*******555555555666****99987775 PP

  == domain 5  score: 20.5 bits;  conditional E-value: 2.9e-07
       Ank_5  18 tpLhvAakygaad..vvrlLl.argadlnltdsrGltaldlA 56 
                 +pLh+Aa ++a++  +v+ Ll a++a+++ +d   +t+l++A
  KOO22909.1 134 LPLHWAATCVAPSkaIVKALLdAYPAAAREKDMGMRTPLHYA 175
                 8********999777*****************999******9 PP

  == domain 6  score: 10.8 bits;  conditional E-value: 0.00032
       Ank_5  18 tpLhvAak.ygaadvvrlLl.arg 39 
                 tpLh+Aa   ++ dvv +Ll a++
  KOO22909.1 170 TPLHYAAAgEVCVDVVTELLaAYP 193
                 9*******************6665 PP

  == domain 7  score: 6.4 bits;  conditional E-value: 0.0077
       Ank_5  18 tpLhvAakygaa 29 
                 +pLh+A++ygaa
  KOO22909.1 205 LPLHWAVHYGAA 216
                 7********986 PP

  == domain 8  score: 19.7 bits;  conditional E-value: 5.1e-07
       Ank_5   3 ehgpadvnrldgggntpLhvAakygaadvvrlLl..argadlnltdsrGlt 51 
                 ++ p++ + +d+ + +pLh+Aa+++a+d +++ l  a++a+ + +d++G+ 
  KOO22909.1 229 AAYPEAAQKKDKLSKLPLHWAAEKRASDAILNVLlaAYPAAVMEKDAMGSI 279
                 5566777777888889*******999999999999***********99965 PP

>> Ank_3  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.4   0.1   0.00056      0.84       4      25 ..      29      51 ..      28      57 .. 0.85
   2 ?    2.9   0.0      0.15   2.3e+02       4      23 ..      64      84 ..      61      91 .. 0.79
   3 ?    6.4   0.0     0.011        17       3      23 ..      98     119 ..      97     125 .. 0.83
   4 !    9.5   0.0    0.0011       1.6       2      27 ..     132     159 ..     131     163 .. 0.84
   5 ?    6.2   0.0     0.013        20       3      23 ..     169     190 ..     168     196 .. 0.75
   6 ?    5.5   0.0     0.023        34       5      23 ..     206     229 ..     204     234 .. 0.73
   7 !    7.1   0.1    0.0067        10       5      27 ..     245     268 ..     243     271 .. 0.86

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00056
       Ank_3  4 tpLhlAarsgnle.ivkfLlenk 25
                 pLh+A++++  e +vk+Ll  +
  KOO22909.1 29 LPLHYAIEHQASEaVVKALLAAY 51
                69**********989*****854 PP

  == domain 2  score: 2.9 bits;  conditional E-value: 0.15
       Ank_3  4 tpLhlAarsgnle.ivkfLle 23
                 +Lh+Aa     + +vk+L+ 
  KOO22909.1 64 HLLHWAAQGKASAaVVKLLFT 84
                68*****99999767888875 PP

  == domain 3  score: 6.4 bits;  conditional E-value: 0.011
       Ank_3   3 etpLhlAarsgnl.eivkfLle 23 
                 + pLh+Aa++    ++v++Ll 
  KOO22909.1  98 RLPLHYAAKQSASvAVVEALLA 119
                 579*******999559**9998 PP

  == domain 4  score: 9.5 bits;  conditional E-value: 0.0011
       Ank_3   2 GetpLhlAarsgnle..ivkfLlenkga 27 
                 ++ pLh+Aa +  ++  ivk+Ll+ + a
  KOO22909.1 132 QRLPLHWAATCVAPSkaIVKALLDAYPA 159
                 689***********6679*****97665 PP

  == domain 5  score: 6.2 bits;  conditional E-value: 0.013
       Ank_3   3 etpLhlAarsgnl.eivkfLle 23 
                 +tpLh+Aa    + ++v  Ll 
  KOO22909.1 169 RTPLHYAAAGEVCvDVVTELLA 190
                 8******987777556666665 PP

  == domain 6  score: 5.5 bits;  conditional E-value: 0.023
       Ank_3   5 pLhlAarsgnl....e.ivkfLle 23 
                 pLh+A+++g      e +vk+++ 
  KOO22909.1 206 PLHWAVHYGAAcdssEaVVKLMIA 229
                 9*******9886554246766665 PP

  == domain 7  score: 7.1 bits;  conditional E-value: 0.0067
       Ank_3   5 pLhlAarsgnle.ivkfLlenkga 27 
                 pLh+Aa+    + i+  Ll  + a
  KOO22909.1 245 PLHWAAEKRASDaILNVLLAAYPA 268
                 9**********9899999997665 PP

>> Ank  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.0       5.5   8.2e+03      13      22 ..       7      13 ..       3      19 .. 0.71
   2 !   10.9   0.1   0.00034      0.51       5      23 ..      30      50 ..      28      60 .. 0.71
   3 ?    5.0   0.0     0.024        36       5      21 ..      65      82 ..      61      90 .. 0.80
   4 !    8.2   0.2    0.0024       3.7       5      24 ..     100     119 ..      99     126 .. 0.78
   5 !    9.1   0.1    0.0012       1.9       5      26 ..     135     157 ..     131     162 .. 0.75
   6 !   13.3   0.0   5.9e-05     0.089       3      29 ..     169     195 ..     168     197 .. 0.75
   7 ?    5.8   0.1     0.014        21       5      22 ..     206     228 ..     205     236 .. 0.73
   8 ?    3.8   0.3     0.058        87       5      22 ..     245     263 ..     244     271 .. 0.69

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 5.5
                TTHHHHHHHH CS
         Ank 13 gkkriiklLL 22
                +   ++++LL
  KOO22909.1  7 A---VVQALL 13
                3...999999 PP

  == domain 2  score: 10.9 bits;  conditional E-value: 0.00034
                HHHHHH.HHTTHHHHHHHH.T CS
         Ank  5 PLHlAa.tngkkriiklLL.h 23
                PLH+A+ + +++ ++k+LL  
  KOO22909.1 30 PLHYAIeHQASEAVVKALLaA 50
                9****99666677******42 PP

  == domain 3  score: 5.0 bits;  conditional E-value: 0.024
                HHHHHHHHTT..HHHHHHH CS
         Ank  5 PLHlAatngk..kriiklL 21
                 LH+Aa  gk  + ++klL
  KOO22909.1 65 LLHWAA-QGKasAAVVKLL 82
                69****.465578899977 PP

  == domain 4  score: 8.2 bits;  conditional E-value: 0.0024
                 HHHHHH.HHTTHHHHHHHHTT CS
         Ank   5 PLHlAa.tngkkriiklLLhG 24 
                 PLH+Aa + +++ ++++LL  
  KOO22909.1 100 PLHYAAkQSASVAVVEALL-A 119
                 9****98556678***999.4 PP

  == domain 5  score: 9.1 bits;  conditional E-value: 0.0012
                 HHHHHH.....HHTTHHHHHHHHTTTS CS
         Ank   5 PLHlAa.....tngkkriiklLLhGAn 26 
                 PLH+Aa     +   k i+k+LL  A 
  KOO22909.1 135 PLHWAAtcvapS---KAIVKALL-DAY 157
                 9****9885554...55******.554 PP

  == domain 6  score: 13.3 bits;  conditional E-value: 5.9e-05
                 BBHHHHHHHHTT..HHHHHHHHTTTSTTC CS
         Ank   3 nTPLHlAatngk..kriiklLLhGAnlna 29 
                 +TPLH+Aa  g   ++++ +LL  A ++a
  KOO22909.1 169 RTPLHYAA-AGEvcVDVVTELL-AAYPDA 195
                 6******9.4445666***999.666666 PP

  == domain 7  score: 5.8 bits;  conditional E-value: 0.014
                 HHHHHHHHTT.....HHHHHHHH CS
         Ank   5 PLHlAatngk.....kriiklLL 22 
                 PLH+A+++g      + ++kl +
  KOO22909.1 206 PLHWAVHYGAacdssEAVVKLMI 228
                 9***9866655555677999887 PP

  == domain 8  score: 3.8 bits;  conditional E-value: 0.058
                 HHHHHH.HHTTHHHHHHHH CS
         Ank   5 PLHlAa.tngkkriiklLL 22 
                 PLH+Aa  +++  i+  LL
  KOO22909.1 245 PLHWAAeKRASDAILNVLL 263
                 9****97445556777777 PP

>> Ank_4  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.3   0.1   8.7e-07    0.0013       2      54 ..      28      82 ..      27      83 .. 0.85
   2 !   14.4   0.1   2.9e-05     0.044       3      44 ..      99     141 ..      97     154 .. 0.90
   3 !    8.7   0.1    0.0018       2.7       2      46 ..     133     179 ..     132     189 .. 0.70
   4 ?    4.9   0.0     0.028        42       2      21 ..     169     189 ..     168     199 .. 0.70
   5 ?    5.3   0.1     0.021        32       4      45 ..     206     252 ..     203     262 .. 0.83

  Alignments for each domain:
  == domain 1  score: 19.3 bits;  conditional E-value: 8.7e-07
       Ank_4  2 ltaLhyaai.sgrlelvrlLlek.gadinaqdnrsGetalhiAakrg.nveilklL 54
                + +Lhya++ +  + +v+ Ll+   + + aq +r+ + +lh Aa++  +  ++klL
  KOO22909.1 28 RLPLHYAIEhQASEAVVKALLAAyPKAVEAQ-DRDSMHLLHWAAQGKaSAAVVKLL 82
                569******8889999**99965488899**.************998677777776 PP

  == domain 2  score: 14.4 bits;  conditional E-value: 2.9e-05
       Ank_4   3 taLhyaai.sgrlelvrlLlekgadinaqdnrsGetalhiAak 44 
                  +Lhyaa+ s  + +v+ Ll+  ++  + ++++++ +lh Aa 
  KOO22909.1  99 LPLHYAAKqSASVAVVEALLAAYPEAAKKKDADQRLPLHWAAT 141
                 58******************999999999************95 PP

  == domain 3  score: 8.7 bits;  conditional E-value: 0.0018
       Ank_4   2 ltaLhyaai..sgrlelvrlLl......ekgadinaqdnrsGetalhiAakrg 46 
                 + +Lh+aa   +    +v+ Ll      ++ +d  ++      t+lh+Aa ++
  KOO22909.1 133 RLPLHWAATcvAPSKAIVKALLdaypaaAREKDMGMR------TPLHYAAAGE 179
                 5689999999999999999999443332223344443......9*****9876 PP

  == domain 4  score: 4.9 bits;  conditional E-value: 0.028
       Ank_4   2 ltaLhyaai.sgrlelvrlLl 21 
                 +t+Lhyaa+ + ++++v  Ll
  KOO22909.1 169 RTPLHYAAAgEVCVDVVTELL 189
                 577777777666666666555 PP

  == domain 5  score: 5.3 bits;  conditional E-value: 0.021
       Ank_4   4 aLhyaai.....sgrlelvrlLlekgadinaqdnrsGetalhiAakr 45 
                 +Lh+a++     ++ + +v+l ++  ++    +++    +lh Aa +
  KOO22909.1 206 PLHWAVHygaacDSSEAVVKLMIAAYPEAAQKKDKLSKLPLHWAAEK 252
                 68999999988************887887777888888999999965 PP

>> DUF3349  Protein of unknown function (DUF3349)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.1   0.0      0.45   6.7e+02       5      23 ..       7      25 ..       4      31 .. 0.86
   2 ?    5.2   0.0     0.025        37       4      24 ..      41      61 ..      38      68 .. 0.83
   3 !    7.5   0.0    0.0048       7.2       4      50 ..      76     122 ..      73     134 .. 0.73
   4 ?   -1.8   0.0       3.8   5.6e+03       4      22 ..     147     165 ..     144     168 .. 0.82
   5 ?    3.2   0.0      0.11   1.6e+02       4      25 ..     182     203 ..     179     207 .. 0.82
   6 ?    2.6   0.0      0.16   2.3e+02       4      24 ..     221     241 ..     218     246 .. 0.85
   7 ?    3.3   0.0     0.093   1.4e+02       4      24 ..     256     276 ..     253     280 .. 0.89

  Alignments for each domain:
  == domain 1  score: 1.1 bits;  conditional E-value: 0.45
                HHHHHHHHH-TT-B-HHHH CS
     DUF3349  5 sileWLragYPegvPeqdy 23
                ++++ L + YPe   ++dy
  KOO22909.1  7 AVVQALLTAYPEAAKRKDY 25
                578889999*********9 PP

  == domain 2  score: 5.2 bits;  conditional E-value: 0.025
                HHHHHHHHHH-TT-B-HHHHH CS
     DUF3349  4 asileWLragYPegvPeqdyv 24
                +++++ L a YP+ v +qd+ 
  KOO22909.1 41 EAVVKALLAAYPKAVEAQDRD 61
                679999***********9985 PP

  == domain 3  score: 7.5 bits;  conditional E-value: 0.0048
                 HHHHHHHHHH-TT-B-HHHHHHHHHHHCTT--HHHHHHHHHHHHHH- CS
     DUF3349   4 asileWLragYPegvPeqdyvpLlalLrrrLsdeevkevaeelvaea 50 
                 a++++ L + YPe v ++d    l l     + + v+ v + l+a  
  KOO22909.1  76 AAVVKLLFTAYPEAVKKKDASSRLPLHYAAKQSASVAVVEALLAAYP 122
                 6899***************9988888777777777766665555544 PP

  == domain 4  score: -1.8 bits;  conditional E-value: 3.8
                 HHHHHHHHHH-TT-B-HHH CS
     DUF3349   4 asileWLragYPegvPeqd 22 
                 ++i++ L   YP    e+d
  KOO22909.1 147 KAIVKALLDAYPAAAREKD 165
                 5789999999999988888 PP

  == domain 5  score: 3.2 bits;  conditional E-value: 0.11
                 HHHHHHHHHH-TT-B-HHHHHH CS
     DUF3349   4 asileWLragYPegvPeqdyvp 25 
                  +++  L a YP+ v e+d++ 
  KOO22909.1 182 VDVVTELLAAYPDAVREKDMMS 203
                 56888899***********875 PP

  == domain 6  score: 2.6 bits;  conditional E-value: 0.16
                 HHHHHHHHHH-TT-B-HHHHH CS
     DUF3349   4 asileWLragYPegvPeqdyv 24 
                 +++++ + a YPe   ++d++
  KOO22909.1 221 EAVVKLMIAAYPEAAQKKDKL 241
                 57999************9986 PP

  == domain 7  score: 3.3 bits;  conditional E-value: 0.093
                 HHHHHHHHHH-TT-B-HHHHH CS
     DUF3349   4 asileWLragYPegvPeqdyv 24 
                 ++il+ L a YP  v e+d +
  KOO22909.1 256 DAILNVLLAAYPAAVMEKDAM 276
                 5799*************9975 PP

>> DUF5047  Domain of unknown function (DUF5047)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.8   0.1      0.19   2.9e+02      89     124 ..      24      59 ..       9      64 .. 0.79
   2 ?    4.8   0.1     0.023        34      97     124 ..      67      94 ..      58      97 .. 0.84
   3 ?    2.7   0.4       0.1   1.5e+02      94     119 ..      99     125 ..      93     134 .. 0.79
   4 ?    1.4   0.0      0.26   3.9e+02      95     124 ..     135     165 ..     126     169 .. 0.69
   5 !    7.6   0.1    0.0032       4.7      89     124 ..     165     200 ..     160     207 .. 0.76
   6 !    6.3   0.0    0.0076        11      95     119 ..     210     235 ..     199     242 .. 0.84
   7 !   10.3   0.1   0.00044      0.66      89     124 ..     238     274 ..     233     279 .. 0.82

  Alignments for each domain:
  == domain 1  score: 1.8 bits;  conditional E-value: 0.19
     DUF5047  89 ddkltspvqyraartavavvaalvlealpaavvewd 124
                 d     p++y     a  +v + +l a+p av   d
  KOO22909.1  24 DYNWRLPLHYAIEHQASEAVVKALLAAYPKAVEAQD 59 
                 6666779999999999999999999****9996655 PP

  == domain 2  score: 4.8 bits;  conditional E-value: 0.023
     DUF5047  97 qyraartavavvaalvlealpaavvewd 124
                 ++ a + a a+v +l+  a+p av + d
  KOO22909.1  67 HWAAQGKASAAVVKLLFTAYPEAVKKKD 94 
                 5778899999***********9997755 PP

  == domain 3  score: 2.7 bits;  conditional E-value: 0.1
     DUF5047  94 spvqyraartavavvaalvlealp.aa 119
                  p++y a ++a  +v + +l a+p aa
  KOO22909.1  99 LPLHYAAKQSASVAVVEALLAAYPeAA 125
                 588999999998888888999***554 PP

  == domain 4  score: 1.4 bits;  conditional E-value: 0.26
     DUF5047  95 pvqyraartava.vvaalvlealpaavvewd 124
                 p+++ a+  a + ++ + +l+a+paa  e d
  KOO22909.1 135 PLHWAATCVAPSkAIVKALLDAYPAAAREKD 165
                 55565555543337888889****9987766 PP

  == domain 5  score: 7.6 bits;  conditional E-value: 0.0032
     DUF5047  89 ddkltspvqyraarta.vavvaalvlealpaavvewd 124
                 d  + +p++y aa+   v vv++l l a+p av e d
  KOO22909.1 165 DMGMRTPLHYAAAGEVcVDVVTEL-LAAYPDAVREKD 200
                 566889*******97615566665.78*****98855 PP

  == domain 6  score: 6.3 bits;  conditional E-value: 0.0076
     DUF5047  95 pvqyraartavavvaalvlealp.aa 119
                  v+y+aa  +  +v +l++ a+p aa
  KOO22909.1 210 AVHYGAACDSSEAVVKLMIAAYPeAA 235
                 689********************554 PP

  == domain 7  score: 10.3 bits;  conditional E-value: 0.00044
     DUF5047  89 ddklts.pvqyraartavavvaalvlealpaavvewd 124
                  dkl+  p+++ a + a  ++ +++l a+paav+e d
  KOO22909.1 238 KDKLSKlPLHWAAEKRASDAILNVLLAAYPAAVMEKD 274
                 56775439999999999*****************966 PP

>> DUF2877  Protein of unknown function (DUF2877)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.5   0.1    0.0021       3.1      28      74 ..      37      84 ..      27      99 .. 0.70
   2 ?    0.8   0.0      0.52   7.8e+02      44      80 ..      89     126 ..      82     135 .. 0.70
   3 !    8.1   0.0    0.0029       4.4      32      75 ..     218     265 ..     197     282 .. 0.72

  Alignments for each domain:
  == domain 1  score: 8.5 bits;  conditional E-value: 0.0021
     DUF2877 28 qkeekelaaalaeva.kakkrttdvSaalLkaalegefseellallka 74
                ++++++  +al +   ka + ++  S +lL++a++g++s+++++ll +
  KOO22909.1 37 HQASEAVVKALLAAYpKAVEAQDRDSMHLLHWAAQGKASAAVVKLLFT 84
                4444444444333336888999999******************98754 PP

  == domain 2  score: 0.8 bits;  conditional E-value: 0.52
     DUF2877  44 akkrttdvSaalLkaalegefseella.llkalsseee 80 
                 a k++++ S+  L++a+++++s ++++ ll+a+ ++++
  KOO22909.1  89 AVKKKDASSRLPLHYAAKQSASVAVVEaLLAAYPEAAK 126
                 567778889999*******9999998834444444433 PP

  == domain 3  score: 8.1 bits;  conditional E-value: 0.0029
     DUF2877  32 kelaaalaeva....kakkrttdvSaalLkaalegefseellallkal 75 
                 ++++a+++ +     +a+++++++S+  L++a+e ++s+++l++l a 
  KOO22909.1 218 DSSEAVVKLMIaaypEAAQKKDKLSKLPLHWAAEKRASDAILNVLLAA 265
                 333333333335678999*************************88765 PP

>> DUF5492  Family of unknown function (DUF5492)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.7   0.0     0.051        77      10      32 ..      24      46 ..      19      56 .. 0.86
   2 ?    3.3   0.0     0.069     1e+02       8      33 ..      92     117 ..      88     129 .. 0.82
   3 ?   -1.7   0.0       2.4   3.6e+03       8      32 ..     127     152 ..     122     157 .. 0.71
   4 ?   -1.5   0.0       2.3   3.4e+03      13      30 ..     168     185 ..     162     192 .. 0.76
   5 ?    0.6   0.0      0.48   7.1e+02      10      31 ..     200     221 ..     194     229 .. 0.80
   6 ?   -0.6   0.0       1.2   1.7e+03      12      32 ..     241     261 ..     234     266 .. 0.81

  Alignments for each domain:
  == domain 1  score: 3.7 bits;  conditional E-value: 0.051
     DUF5492 10 dvkydmplhyqchnnadkdivna 32
                d ++ +plhy    +a   +v+a
  KOO22909.1 24 DYNWRLPLHYAIEHQASEAVVKA 46
                778899*******9999999987 PP

  == domain 2  score: 3.3 bits;  conditional E-value: 0.069
     DUF5492   8 kidvkydmplhyqchnnadkdivnay 33 
                 k d    +plhy  ++ a   +v+a 
  KOO22909.1  92 KKDASSRLPLHYAAKQSASVAVVEAL 117
                 56777889**********99999885 PP

  == domain 3  score: -1.7 bits;  conditional E-value: 2.4
     DUF5492   8 kidvkydmplhyqchnna.dkdivna 32 
                 k d    +plh+     a  k iv+a
  KOO22909.1 127 KKDADQRLPLHWAATCVApSKAIVKA 152
                 56777789999987665525677766 PP

  == domain 4  score: -1.5 bits;  conditional E-value: 2.3
     DUF5492  13 ydmplhyqchnnadkdiv 30 
                    plhy    +   d+v
  KOO22909.1 168 MRTPLHYAAAGEVCVDVV 185
                 56799*998888777776 PP

  == domain 5  score: 0.6 bits;  conditional E-value: 0.48
     DUF5492  10 dvkydmplhyqchnnadkdivn 31 
                 d+   +plh+ +h  a  d  +
  KOO22909.1 200 DMMSKLPLHWAVHYGAACDSSE 221
                 666789*******999877655 PP

  == domain 6  score: -0.6 bits;  conditional E-value: 1.2
     DUF5492  12 kydmplhyqchnnadkdivna 32 
                    +plh+   + a   i+n 
  KOO22909.1 241 LSKLPLHWAAEKRASDAILNV 261
                 5579******99999999885 PP

>> AMNp_N  Bacterial AMP nucleoside phosphorylase N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.1   0.0      0.18   2.7e+02     102     122 ..      24      42 ..       6      63 .. 0.67
   2 ?    6.4   0.0    0.0041       6.2      87     119 ..      79     112 ..      76     130 .. 0.82
   3 ?   -1.1   0.0      0.84   1.2e+03      88     113 ..     115     140 ..     111     161 .. 0.76
   4 ?   -1.9   0.0       1.5   2.3e+03     103     121 ..     166     183 ..     148     204 .. 0.66
   5 ?   -1.5   0.0       1.1   1.7e+03      89     121 ..     187     218 ..     179     251 .. 0.69

  Alignments for each domain:
  == domain 1  score: 1.1 bits;  conditional E-value: 0.18
                 EEEEE--GGGCCTSS.T---SC CS
      AMNp_N 102 eSdqeiPlhyvldes.eleleg 122
                   + ++Plhy+++++ +   e+
  KOO22909.1  24 DYNWRLPLHYAIEHQaS---EA 42 
                 556689*****999833...33 PP

  == domain 2  score: 6.4 bits;  conditional E-value: 0.0041
                 HHHHHHCC--EEEEEEEEEE--GGGCCTSS.T-- CS
      AMNp_N  87 lelLlrnygvevevgeSdqeiPlhyvldes.ele 119
                 ++lL + y  +v+ + ++ ++Plhy+ ++s +++
  KOO22909.1  79 VKLLFTAYPEAVKKKDASSRLPLHYAAKQSaSVA 112
                 5899**********************99884333 PP

  == domain 3  score: -1.1 bits;  conditional E-value: 0.84
                 HHHHHCC--EEEEEEEEEE--GGGCC CS
      AMNp_N  88 elLlrnygvevevgeSdqeiPlhyvl 113
                 e Ll  y  + + + +dq++Plh++ 
  KOO22909.1 115 EALLAAYPEAAKKKDADQRLPLHWAA 140
                 56777788888888899999999984 PP

  == domain 4  score: -1.9 bits;  conditional E-value: 1.5
                 EEEE--GGGCCTSST---S CS
      AMNp_N 103 SdqeiPlhyvldeselele 121
                   ++ Plhy+ +++ + ++
  KOO22909.1 166 MGMRTPLHYAAAGE-VCVD 183
                 55677999997776.4444 PP

  == domain 5  score: -1.5 bits;  conditional E-value: 1.1
                 HHHHCC--EEEEEEEEEE--GGGCCTSST---S CS
      AMNp_N  89 lLlrnygvevevgeSdqeiPlhyvldeselele 121
                  Ll  y  +v  +    ++Plh++++ + ++ +
  KOO22909.1 187 ELLAAYPDAVREKDMMSKLPLHWAVHYG-AACD 218
                 5666666677777777888999988877.3333 PP

>> DUF2976  Protein of unknown function (DUF2976)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.9   0.0      0.26   3.9e+02      41      59 ..       6      24 ..       2      34 .. 0.78
   2 ?   -1.8   0.0       1.8   2.8e+03      40      59 ..      75      94 ..      53     105 .. 0.73
   3 ?    0.6   0.0      0.33   4.9e+02      39      59 ..     109     129 ..     104     142 .. 0.83
   4 ?   -0.5   0.0      0.72   1.1e+03      41      69 ..     182     210 ..     172     214 .. 0.83
   5 ?    3.2   0.0     0.052        78      42      66 ..     222     246 ..     221     250 .. 0.89
   6 ?   -2.5   0.0       3.1   4.6e+03      48      73 ..     276     301 ..     257     305 .. 0.55

  Alignments for each domain:
  == domain 1  score: 0.9 bits;  conditional E-value: 0.26
     DUF2976 41 laVakaalkkfneisegka 59
                laV++a+l+ + e+ + k 
  KOO22909.1  6 LAVVQALLTAYPEAAKRKD 24
                89***********955443 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 1.8
     DUF2976 40 flaVakaalkkfneisegka 59
                  aV+k +++ + e+ ++k 
  KOO22909.1 75 SAAVVKLLFTAYPEAVKKKD 94
                45788888888888866665 PP

  == domain 3  score: 0.6 bits;  conditional E-value: 0.33
     DUF2976  39 aflaVakaalkkfneisegka 59 
                 a +aV++a+l+ + e+ ++k 
  KOO22909.1 109 ASVAVVEALLAAYPEAAKKKD 129
                 55799**********977765 PP

  == domain 4  score: -0.5 bits;  conditional E-value: 0.72
     DUF2976  41 laVakaalkkfneisegkaewgkfgltlv 69 
                 + V++++l+ + ++ ++k   +k+ l+ +
  KOO22909.1 182 VDVVTELLAAYPDAVREKDMMSKLPLHWA 210
                 6799999*******999999999877665 PP

  == domain 5  score: 3.2 bits;  conditional E-value: 0.052
     DUF2976  42 aVakaalkkfneisegkaewgkfgl 66 
                 aV+k +++ + e+ ++k +++k+ l
  KOO22909.1 222 AVVKLMIAAYPEAAQKKDKLSKLPL 246
                 59999**************999865 PP

  == domain 6  score: -2.5 bits;  conditional E-value: 3.1
     DUF2976  48 lkkfneisegkaewgkfgltlvvGvv 73 
                 +++    s  +a  +k+ ++ v+Gv 
  KOO22909.1 276 MGSIPKLSPARAPRAKLPAIKVIGVA 301
                 44444455555666666677777765 PP

>> Sulfotransfer_4  Sulfotransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.1      0.96   1.4e+03      78      91 ..      41      54 ..       6      57 .. 0.57
   2 ?    7.1   2.4     0.003       4.4      38      91 ..     108     160 ..      53     162 .. 0.70
   3 ?    2.2   0.1     0.094   1.4e+02      73      91 ..     177     195 ..     163     197 .. 0.77
   4 ?    0.8   0.1      0.25   3.8e+02      68      91 ..     212     234 ..     198     236 .. 0.87

  Alignments for each domain:
  == domain 1  score: -1.1 bits;  conditional E-value: 0.96
  Sulfotransfer_4 78 alfaeelleayPda 91
                      ++++ ll+ayP+a
       KOO22909.1 41 EAVVKALLAAYPKA 54
                     34566666666665 PP

  == domain 2  score: 7.1 bits;  conditional E-value: 0.003
  Sulfotransfer_4  38 sdlkewaealeakkegkkpitredfdkllg.gydavvdvpaalfaeelleayPda 91 
                      s   +++eal a ++  +  +++d d+ l  +  a++  p+ ++++ ll+ayP a
       KOO22909.1 108 SASVAVVEALLAAYP--EAAKKKDADQRLPlHWAATCVAPSKAIVKALLDAYPAA 160
                      344455555555565..46666677665544888888888888888888888876 PP

  == domain 3  score: 2.2 bits;  conditional E-value: 0.094
  Sulfotransfer_4  73 vdvpaalfaeelleayPda 91 
                      ++  ++ ++ ell+ayPda
       KOO22909.1 177 AGEVCVDVVTELLAAYPDA 195
                      4445568899********9 PP

  == domain 4  score: 0.8 bits;  conditional E-value: 0.25
  Sulfotransfer_4  68 gydavvdvpaalfaeelleayPda 91 
                      +y a++d    ++++ +++ayP+a
       KOO22909.1 212 HYGAACDSSE-AVVKLMIAAYPEA 234
                      899****999.999********98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (311 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       486  (0.0271069); expected 358.6 (0.02)
Passed bias filter:                      330  (0.0184059); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                        13  (0.000725082); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.56u 0.27s 00:00:00.83 Elapsed: 00:00:00.43
# Mc/sec: 2181.07
//
Query:       KOO22910.1  [L=428]
Description: 3-hydroxy-3-methylglutaryl coenzyme a reductase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
   3.6e-119  398.0  12.3     4e-117  391.3  12.3    2.0  1  HMG-CoA_red  Hydroxymethylglutaryl-coenzyme A reductase
  ------ inclusion threshold ------
      0.043   13.8   2.1       0.44   10.5   0.2    3.0  3  SSI          Subtilisin inhibitor-like


Domain annotation for each model (and alignments):
>> HMG-CoA_red  Hydroxymethylglutaryl-coenzyme A reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  391.3  12.3  4.5e-121    4e-117       2     367 .]      64     427 ..      63     427 .. 0.97

  Alignments for each domain:
  == domain 1  score: 391.3 bits;  conditional E-value: 4.5e-121
                  HHHHHHHHHHS-HHHHHHHTT----.....HHHHHHHSSS---------EEEEEEEETTEEEEEEE---STTHHHHHHHHHHHHHHTT-B.EEEE--- CS
  HMG-CoA_red   2 veeRrklleelteeeleelkeesld.....eevadkmiEnviGyvqlPlGvagpllingkeylvPmAteEgslvAsasrgakainesgGvkttvlkdg 94 
                  v+ Rr++le++ +  + +l+++ ld     ++v +++ E v+G v+lP+Gvagpll+ngk+y vPmAt Eg+l+As+ rg+kai+esgG++++vl++g
   KOO22910.1  64 VRVRRAWLERSMGVGVGTLPHDVLDceafySSVKGACAEMVVGFVPLPVGVAGPLLLNGKSYQVPMATVEGTLIASTRRGCKAITESGGAQAAVLQQG 161
                  789*******99999999988888877777999***************************************************************** PP

                  -EEEEEEEE.--S-HHHHHHHHHTHHHHHHHHHHCSHHCCT-EEEEEEEEE-SSEEEEEEEEE-TTC--HHHHHHHHHHHHHHHHHH.HTSEEEEEEE CS
  HMG-CoA_red  95 mtraqvvllesvedaaelkkwiekkeeleelanaaestsrggglkdievvlagrlvvlrlkvdtgDAmGaNmvnkateaaaelieee.fgeeellsil 191
                  mtra+v+ ++s+ +a ++k+w+e+  ++ee ++++est+r+g+l +++v++agr+++ r+ + tgDAmG+Nmv+k+++a++e +  + f+++e l ++
   KOO22910.1 162 MTRAPVLQFPSAMRAVAFKQWLEDPVHFEEAKAQFESTTRFGKLLSVKVTVAGRFAYARFMCATGDAMGMNMVSKGVNAVLEHLAATdFPDSEALGLS 259
                  ************************************************************************************9555********** PP

                  -S--GGGEEEEEEEEEHHHH..-SSTTHHHHHHHHHHHHHHHHHH-HHHH....HHHHHHH.........HHHHHHHHHHTT--HHHHHHHHHHHTTS CS
  HMG-CoA_red 192 sNlctdkkasainaiegrgksvvaeatigeevvekilkasaealvdlnra.n.igtankGi..ggfnahaaNgiaAvflAtGqDlaaveesshaiaal 285
                  +Nlc dkk++ain+i+                   +lk+++ a+ +ln a n +g+a++G+  ggfnahaaN ++AvflA+GqD+a+++ess++i+ l
   KOO22910.1 260 GNLCCDKKPAAINWIQ-------------------VLKTTVAAVCELNLAkNlVGSAMAGMsaGGFNAHAANLVTAVFLACGQDPAQNVESSNCITQL 338
                  **************96...................5789999********************9*********************************** PP

                  EEETTTE.EEEEEEEE.----SBSHHHHH-HHHHHHHHTT---HH.........HHHHHHHHHHHHHHHHHHHHHT-----HHHHHHHH CS
  HMG-CoA_red 286 eevedgd.lygsvtlPsleVGtvGGgtklppqaellkllgvkgak......nakeLaeiiaavgLAqelsalrALaaeglqkgHmklhr 367
                  + v++g  l++s+t+Ps+eVGtvGGgt+l +q+++l+llgv+g+       +a++La ++aa+++A+els+l+AL+a++l+k+Hm+l+r
   KOO22910.1 339 TPVNGGAdLHISCTMPSIEVGTVGGGTHLAAQKACLNLLGVAGSAdaspgaHARQLAMVVAATVMAGELSLLSALSAGHLVKAHMALNR 427
                  ***77756***********************************999*****************************************97 PP

>> SSI  Subtilisin inhibitor-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.3   0.0     0.037   3.3e+02      38      87 ..     139     190 ..     129     195 .. 0.67
   2 ?   -2.4   0.0      0.55   4.9e+03      15      30 ..     308     323 ..     301     347 .. 0.53
   3 ?   10.5   0.2   4.9e-05      0.44      33      59 ..     363     389 ..     344     403 .. 0.87

  Alignments for each domain:
  == domain 1  score: 1.3 bits;  conditional E-value: 0.037
         SSI  38 aaaaACaeLkaveGdfealaae.kealCtkey.dpvtvtaeGvWeGkrvsye 87 
                 ++++ C+++++++G+ +a+ ++  +++   ++ + + + a  +W   +v++e
  KOO22910.1 139 STRRGCKAITESGGAQAAVLQQgMTRAPVLQFpSAMRAVAFKQWLEDPVHFE 190
                 56789*********99998888555554444413455555666777777776 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 0.55
         SSI  15 aaaaeveravtLsCeP 30 
                 a+aa+  +av L C  
  KOO22910.1 308 AHAANLVTAVFLACGQ 323
                 5556666777777743 PP

  == domain 3  score: 10.5 bits;  conditional E-value: 4.9e-05
         SSI  33 gGthpaaaaACaeLkaveGdfealaae 59 
                 gGth aa++AC +L  v G+ +a + +
  KOO22910.1 363 GGTHLAAQKACLNLLGVAGSADASPGA 389
                 8******************99987766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (428 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       506  (0.0282224); expected 358.6 (0.02)
Passed bias filter:                      350  (0.0195214); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.48u 0.26s 00:00:00.74 Elapsed: 00:00:00.40
# Mc/sec: 3216.34
//
Query:       KOO22911.1  [L=2388]
Description: voltage-gated ion channel superfamily [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
   2.5e-128  426.5  49.3    2.2e-39  135.2   3.7    5.0  4  Ion_trans     Ion transport protein
    6.4e-26   87.9   7.5    0.00012   21.3   0.1    6.6  7  EF-hand_1     EF hand
    2.9e-23   82.1  11.7    9.1e-10   38.8   0.8    4.1  4  EF-hand_7     EF-hand domain pair
    2.5e-22   76.9  16.3    0.00012   21.7   0.2    7.4  6  EF-hand_6     EF-hand domain
    2.5e-18   64.7  12.6      7e-05   22.1   0.1    5.1  5  EF-hand_5     EF hand
    2.1e-10   40.3  11.1    1.6e-05   24.6   0.4    5.1  5  EF-hand_8     EF-hand domain pair
    7.5e-08   32.7   2.1    0.00041   20.6   0.1    3.3  3  SPARC_Ca_bdg  Secreted protein acidic and rich in cysteine Ca
    0.00061   18.6   7.2    0.00061   18.6   7.2    8.7  9  PKD_channel   Polycystin cation channel
  ------ inclusion threshold ------
      0.037   13.8   0.0       0.12   12.1   0.0    1.9  1  GPHH          Voltage-dependent L-type calcium channel, IQ-as
      0.058   13.7   0.4       0.93    9.9   0.1    2.9  3  EF-hand_9     EF-hand domain
       0.22   11.6   6.5       0.13   12.2   1.4    2.8  2  TM_helix      Conserved TM helix
       0.46    9.8   3.2        4.4    6.5   0.0    3.4  3  DUF3810       Protein of unknown function (DUF3810)
        4.9    7.0   5.4       0.46   10.3   0.3    1.9  2  Folliculin    Vesicle coat protein involved in Golgi to plasm


Domain annotation for each model (and alignments):
>> Ion_trans  Ion transport protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  135.2   3.7   1.6e-42   2.2e-39       4     241 ..     300     606 ..     297     609 .. 0.90
   2 !   89.5  17.6   1.4e-28   1.9e-25       3     242 ..     785    1046 ..     783    1048 .. 0.87
   3 !   86.3   0.0   1.3e-27   1.9e-24      61     242 ..    1551    1832 ..    1525    1835 .. 0.84
   4 !  122.1  13.5   1.6e-38   2.1e-35       3     239 ..    1903    2150 ..    1901    2155 .. 0.90

  Alignments for each domain:
  == domain 1  score: 135.2 bits;  conditional E-value: 1.6e-42
                 HHHHHHHHHHHHHHHHHCCCSSSS..HHHHC...HHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHCHSHHHHHHHHHHHHHHHHH....HHHHHHHH CS
   Ion_trans   4 felfilllillncvflaletyfpe..delek...tileilelvftaiftlemllkilalgllikkrYlrdpwnilDflvvlpsllsl....vlseesll 93 
                 f   +l  +l+++ fla e++ p   d       ++ ++++++ +++ft+em++k+++lg      Yl + wnilD ++v+ s++ l    v+ ++  +
  KOO22911.1 300 FRNTVLGAVLMSAYFLATEYPEPFppD---PardDLYDTVDWLLNIFFTFEMVIKVVGLGR----VYLAEKWNILDGTIVVGSWAALivevVMGNQFAG 391
                 66677889999999**99877776432...2346************************999....********************88655544448899 PP

                 HHHHHHHHGGGGGGHHHCHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCC................................. CS
   Ion_trans  94 llsvlrlfrvlrllklisrleglrtlvtalirsvkdllnvlllllvvlfifaligvqlfkgklrek................................. 159
                 +++ lr++rvlr+l+++++++glr+++++ + ++ dl+ +l+++ ++ f+f+l+   l   klr +                                 
  KOO22911.1 392 AVTNLRILRVLRPLRVLESIPGLRIIINSTLYAAYDLGSTLMIITFFTFLFGLFLTSLLSAKLRFRcydthegvfyespylvcssiqsigrqctranat 490
                 ****************************************************************99******************************999 PP

                 ............................CC......SCCSTSSSTTTSSSSSSHHHHHHHHHHHHTTSSHHHHHHHHHHHSHHHHHHHHHHHHHHHHHH CS
   Ion_trans 160 ............................ne......caktwenpnngntnFdnfftallwlfrlmttegwgdilyatldekskvaliyfvifiilgsfl 224
                                             +       +  tw  +   +++Fdnf+ a+l++f++ ++++w  + + + d ++     +f+i++ +gs +
  KOO22911.1 491 cvdsgtgehaslrtggrdilaltpyyerKGlsadevKPVTWYANPPYQPSFDNFPLAVLSVFQIWCGVDWSIMQNLVVDTQGAAWESVFIIMYAIGSWV 589
                 999999999988888888777777766500556667788898888999*********************************999999************ PP

                 HHHHHHHHHHHHHHHHH CS
   Ion_trans 225 llNlliaviadnfqelt 241
                 l+N++iav  +++++ +
  KOO22911.1 590 LMNVFIAVLGTAYEREK 606
                 *************9876 PP

  == domain 2  score: 89.5 bits;  conditional E-value: 1.4e-28
                  HHHHHHHHHHHHHHHHHHCCCSSSSHHHHC....HHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHCHSHHHHHHHHHHHHHHHHHHHHH...... CS
   Ion_trans    3 vfelfilllillncvflaletyfpedelek....tileilelvftaiftlemllkilalgllikkrYlrdpwnilDflvvlpsllslvlse...... 89  
                  +f  + ++++l n+v+ a++ +f  +++ +      + il  +f + f+lemll+i+++gl   ++Y ++p +++  l v++ ++++v++       
  KOO22911.1  785 SFRALAFFVVLANAVVSAFDGPFVDERFGRgdeaYRIWILGHLFGIYFLLEMLLRIYVFGL---RTYATTPSFVFEGLLVVVWFFEVVSWFtglele 878 
                  57778899***********999999777777777666788899******************...***********************6655666755 PP

                  .HHHHHHHHHHHHGGGGGGHHHCHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCC.............CC.SCCSTSSSTT CS
   Ion_trans   90 .esllllsvlrlfrvlrllklisrleglrtlvtalirsvkdllnvlllllvvlfifaligvqlfkgklrek.............ne.caktwenpnn 171 
                   ++l++l+ +rl+r+ +ll  +s l+g  +l+  +  s+ ++  +l++l++ +f+ a++g++l+ g +                n+ +  t++ + +
  KOO22911.1  879 nQVLSSLKSFRLLRLHKLLYSLSELSGTTALLDQIYASLVAVAWMLVALVIWIFLIAILGMHLYSGMYDDVyaggrclpyadgaNStQLHTDSCALK 975 
                  567777777777777777777788999999**********************************666664477766666656542267778888899 PP

                  TSSSSSSHHHHHHHHHHHHTTSSHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
   Ion_trans  172 gntnFdnfftallwlfrlmttegwgdilyatldekskvaliyfvifiilgsflllNlliaviadnfqelte 242 
                  ++ +Fd ++ +++++f++ t++ w  ++++t+  ++ +a+i+f +++i g+f+++N+++ +  ++f+++ +
  KOO22911.1  976 PRHHFDFLLISIVSVFQTVTQDVWSRVMWDTYLVSGPLAFIFFPAVVISGNFVMVNMFLSILLSTFSSMAK 1046
                  9999***************************************************************9987 PP

  == domain 3  score: 86.3 bits;  conditional E-value: 1.3e-27
                  HHHHHCHSHHHHHHHHHHHHHHHHHHHHH.HHHHHHHHHHHHGGGGGGHHHCHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSC CS
   Ion_trans   61 ikkrYlrdpwnilDflvvlpsllslvlse.esllllsvlrlfrvlrllklisrleglrtlvtalirsvkdllnvlllllvvlfifaligvqlfkgkl 156 
                  +++ ++r+pw +lD++ +l++l+   +++    ++++++ ++  lr+l l+sr++ l+++  +++rs++++l  l+ll+  ++ifaligv+lf+g  
  KOO22911.1 1551 GPLAFFRQPWYMLDLICLLLALFNPLNNTdVITFNQRIFGALASLRALMLFSRFNELKHISESIARSLPNVLIALILLVAGWLIFALIGVELFGGGT 1647
                  5589*******************6633334679**************************************************************** PP

                  CCC...............................................................CC.........SCCSTSSSTTTSSSSSSHHH CS
   Ion_trans  157 rek...............................................................ne.........caktwenpnngntnFdnfft 181 
                   ++                                                                e          +  w+ +   ++nFd++++
  KOO22911.1 1648 SQCahlnatlgipgcgvgegvwgegsvlytdatkcryarwplpppalvvpgetnstqcgcqwtgarREcsvfiaadgAELLWTRS---FPNFDSLPM 1741
                  ********************************99999999999999999988877777777766651155555544444556655...99****666 PP

                  HHHHHHH...................HHTTSSHHHHHHHHHHHS...........HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
   Ion_trans  182 allwlfr...................lmttegwgdilyatldek...........skvaliyfvifiilgsflllNlliaviadnfqelte 242 
                  all+lf+                   + t +gw +ily t d+            +++  +yf++fi++g+ l ++++ a+i++ ++++++
  KOO22911.1 1742 ALLALFQaladclphclhsssvsaahISTLDGWANILYLTGDYIavetqpareasTFIPALYFILFIVFGVWLSVSVFTAIIISELENIKR 1832
                  66666664444444444444445555788888888888888888*****************************************999886 PP

  == domain 4  score: 122.1 bits;  conditional E-value: 1.6e-38
                  HHHHHHHHHHHHHHHHHHCCCSSSSHHHHC.HHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHCHSHHHHHHHHHHHHHHHHH........HHHH. CS
   Ion_trans    3 vfelfilllillncvflaletyfpedelek.tileilelvftaiftlemllkilalgllikkrYlrdpwnilDflvvlpsllsl........vlse. 89  
                   f+  + ++i+ln+v+l+l + + + +    +i e l++ f+a+f++e+ ++i al +    +Y+r+pwn+lDf+ +++s++          v    
  KOO22911.1 1903 AFDRTVSVCICLNVVALTLYSDPINRT--VlQIYELLDYGFVALFAIEAMVRIGALTF---IEYWRNPWNRLDFVLAVVSVIFSfvtiiafaV--Ld 1992
                  6889999************66666633..34***************************...**************999999933344455552..04 PP

                  ....HHHHHHHHHHHHGGGGGGHHHCHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCCCCSCCSTSSSTTTSSSSSSHHHH CS
   Ion_trans   90 ....esllllsvlrlfrvlrllklisrleglrtlvtalirsvkdllnvlllllvvlfifaligvqlfkgklreknecaktwenpnngntnFdnffta 182 
                      +  ++++ lr+fr +r+++l  ++++l  l++++i +v+++l++   ++++ f +a +g+ l ++ ++      + + +   ++ nF++ f a
  KOO22911.1 1993 gynlKDDPAMRWLRCFRAIRIVRLAGMSPSLLKLLRTIIFAVPSILYTSAWIFILTFSYAHFGMVLLGTIIY------DHEGDGLSRHANFETAFRA 2083
                  4666789************************************************************88888......677788899********** PP

                  HHHHHHHHTTSSHHHHHHHHHHHS..........HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
   Ion_trans  183 llwlfrlmttegwgdilyatldek..........skvaliyfvifiilgsflllNlliaviadnfqe 239 
                  + +lfr++t++ wg +l++ l+             +   ++f+++i +++ +l+++++a+++d+++ 
  KOO22911.1 2084 FSALFRMATGDAWGAMLADALNNPhvarietrppDSAVAVFFIAYIAFVAWVLIAMFVAIVQDSYAT 2150
                  **********************************99999*************************986 PP

>> EF-hand_1  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.0   0.0   2.4e-07   0.00033       3      26 ..      21      44 ..      19      47 .. 0.88
   2 !    9.9   0.0    0.0004      0.56       6      26 ..      60      80 ..      55      82 .. 0.86
   3 !   21.3   0.1     9e-08   0.00012       2      28 ..     708     734 ..     707     735 .. 0.91
   4 !   19.0   0.1   5.1e-07    0.0007       5      26 ..     747     768 ..     743     770 .. 0.88
   5 !   16.0   0.0   4.4e-06     0.006       2      27 ..    1354    1379 ..    1353    1381 .. 0.86
   6 ?   -2.8   0.1       4.7   6.4e+03      16      26 ..    1403    1413 ..    1401    1414 .. 0.84
   7 ?   -1.8   0.0       2.2     3e+03      12      24 ..    2237    2249 ..    2236    2251 .. 0.81

  Alignments for each domain:
  == domain 1  score: 20.0 bits;  conditional E-value: 2.4e-07
                HHHHHHHTTTSSSEEEHHHHHHHH CS
   EF-hand_1  3 keiFrefDkDgdGkIdfeEfkell 26
                +++F+ fD+DgdG++d  E++ +l
  KOO22911.1 21 NRLFQRFDTDGDGFLDVAELQPML 44
                689*****************8766 PP

  == domain 2  score: 9.9 bits;  conditional E-value: 0.0004
                HHHHTTTSSSEEEHHHHHHHH CS
   EF-hand_1  6 FrefDkDgdGkIdfeEfkell 26
                 +++D+Dg+  +d+ Ef+el+
  KOO22911.1 60 HSKYDTDGNHLLDRHEFLELV 80
                579**************9986 PP

  == domain 3  score: 21.3 bits;  conditional E-value: 9e-08
                 HHHHHHHHTTTSSSEEEHHHHHHHHHH CS
   EF-hand_1   2 lkeiFrefDkDgdGkIdfeEfkellkk 28 
                 lk++F+ +Dk+gdG ++ eE+ ++ ++
  KOO22911.1 708 LKKAFETIDKNGDGLLTEEELEDAYER 734
                 79*******************998765 PP

  == domain 4  score: 19.0 bits;  conditional E-value: 5.1e-07
                 HHHHHTTTSSSEEEHHHHHHHH CS
   EF-hand_1   5 iFrefDkDgdGkIdfeEfkell 26 
                 +++  DkDg+G I+f+Ef+++l
  KOO22911.1 747 FIDACDKDGSGEISFNEFVAVL 768
                 68899**************987 PP

  == domain 5  score: 16.0 bits;  conditional E-value: 4.4e-06
                  HHHHHHHHTTTSSSEEEHHHHHHHHH CS
   EF-hand_1    2 lkeiFrefDkDgdGkIdfeEfkellk 27  
                  +k+ F+ +D DgdG+I+ ++  +ll+
  KOO22911.1 1354 FKDTFQRADLDGDGYITCSQVYRLLA 1379
                  799**************988877776 PP

  == domain 6  score: -2.8 bits;  conditional E-value: 4.7
                  EEEHHHHHHHH CS
   EF-hand_1   16 kIdfeEfkell 26  
                   I+  Ef+ ++
  KOO22911.1 1403 LISQHEFLMFM 1413
                  699*****999 PP

  == domain 7  score: -1.8 bits;  conditional E-value: 2.2
                  TSSSEEEHHHHHH CS
   EF-hand_1   12 DgdGkIdfeEfke 24  
                  D+dG++ f E + 
  KOO22911.1 2237 DRDGTVHFLEVLL 2249
                  9*****9999776 PP

>> EF-hand_7  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.8   0.6   1.2e-11   1.7e-08       4      70 ..      20      80 ..      17      81 .. 0.93
   2 !   38.8   0.8   6.6e-13   9.1e-10       4      68 ..     708     766 ..     707     768 .. 0.95
   3 !   13.3   0.1   6.2e-05     0.086       5      70 ..    1355    1413 ..    1352    1414 .. 0.77
   4 ?   -2.4   0.0         5   6.9e+03      44      65 ..    2224    2246 ..    2165    2254 .. 0.45

  Alignments for each domain:
  == domain 1  score: 34.8 bits;  conditional E-value: 1.2e-11
   EF-hand_7  4 lkeaFkelDtdgdgyldkeellrllrkifqgagegsklsdeelellfkefDtdkdGvisfdEFlkly 70
                  + F+ +Dtdgdg+ld++el+ +l         g++ s +++ +l  + Dtd+++ +++ EFl+l+
  KOO22911.1 20 ANRLFQRFDTDGDGFLDVAELQPMLL------QLGFDASAKKVTELHSKYDTDGNHLLDRHEFLELV 80
                5678*******************999......89999999***********************9975 PP

  == domain 2  score: 38.8 bits;  conditional E-value: 6.6e-13
   EF-hand_7   4 lkeaFkelDtdgdgyldkeellrllrkifqgagegsklsdeelellfkefDtdkdGvisfdEFlk 68 
                 lk aF+ +D++gdg l++eel+++++      +    +++++   +++  D+d++G+isf+EF++
  KOO22911.1 708 LKKAFETIDKNGDGLLTEEELEDAYE------RLHLTMDKQQFLSFIDACDKDGSGEISFNEFVA 766
                 799***********************......8999999************************87 PP

  == domain 3  score: 13.3 bits;  conditional E-value: 6.2e-05
   EF-hand_7    5 keaFkelDtdgdgyldkeellrllrkifqgagegsklsdeelellfkefDtdk..dGvisfdEFlkly 70  
                  k+ F+  D dgdgy++ +++ rll       + g+++   e  + ++ +D+++  d+ is  EFl ++
  KOO22911.1 1355 KDTFQRADLDGDGYITCSQVYRLLA------ELGEEPKN-E--ATWEVLDKSStvDDLISQHEFLMFM 1413
                  678****************877999......88888554.3..5666666666557899999998777 PP

  == domain 4  score: -2.4 bits;  conditional E-value: 5
   EF-hand_7   44 eelellfkefD.tdkdGvisfdE 65  
                  e++e ++ ++D  d+dG++ f E
  KOO22911.1 2224 EQMEGILVDLDaPDRDGTVHFLE 2246
                  44444444553135566666655 PP

>> EF-hand_6  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.7   0.2   8.5e-08   0.00012       2      27 ..      20      45 ..      19      49 .. 0.88
   2 !    8.2   0.1    0.0019       2.7       7      25 ..      61      79 ..      56      87 .. 0.86
   3 !   20.6   0.1   2.1e-07   0.00028       2      27 ..     708     733 ..     707     739 .. 0.92
   4 !   16.0   0.1   6.1e-06    0.0084       3      27 ..     745     769 ..     743     772 .. 0.85
   5 !   13.9   0.1   2.8e-05     0.038       2      31 .]    1354    1382 ..    1353    1382 .. 0.90
   6 ?    1.3   0.0       0.3   4.1e+02      12      26 ..    2237    2251 ..    2232    2259 .. 0.85

  Alignments for each domain:
  == domain 1  score: 21.7 bits;  conditional E-value: 8.5e-08
   EF-hand_6  2 lreaFklfDkdgdGkidaeElrkalr 27
                 +++F+ fD+dgdG++d +El+ +l 
  KOO22911.1 20 ANRLFQRFDTDGDGFLDVAELQPMLL 45
                5799*****************98886 PP

  == domain 2  score: 8.2 bits;  conditional E-value: 0.0019
   EF-hand_6  7 klfDkdgdGkidaeElrka 25
                 ++D+dg+  +d++E+  +
  KOO22911.1 61 SKYDTDGNHLLDRHEFLEL 79
                58**************874 PP

  == domain 3  score: 20.6 bits;  conditional E-value: 2.1e-07
   EF-hand_6   2 lreaFklfDkdgdGkidaeElrkalr 27 
                 l++aF+ +Dk+gdG ++ eEl +a+ 
  KOO22911.1 708 LKKAFETIDKNGDGLLTEEELEDAYE 733
                 799********************987 PP

  == domain 4  score: 16.0 bits;  conditional E-value: 6.1e-06
   EF-hand_6   3 reaFklfDkdgdGkidaeElrkalr 27 
                  ++ ++ Dkdg+G+i+++E++++l 
  KOO22911.1 745 LSFIDACDKDGSGEISFNEFVAVLG 769
                 5677899***************997 PP

  == domain 5  score: 13.9 bits;  conditional E-value: 2.8e-05
   EF-hand_6    2 lreaFklfDkdgdGkidaeElrkalrkalg 31  
                  +++ F+  D dgdG+i+ +++ ++l  +lg
  KOO22911.1 1354 FKDTFQRADLDGDGYITCSQVYRLLA-ELG 1382
                  899******************99998.665 PP

  == domain 6  score: 1.3 bits;  conditional E-value: 0.3
   EF-hand_6   12 dgdGkidaeElrkal 26  
                  d+dG++++ E+  al
  KOO22911.1 2237 DRDGTVHFLEVLLAL 2251
                  8**********9887 PP

>> EF-hand_5  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.1   0.1   5.1e-08     7e-05       3      22 ..      22      41 ..      20      44 .. 0.92
   2 ?   -2.4   0.0         3   4.1e+03       7      25 .]      62      80 ..      61      80 .. 0.76
   3 !   19.3   0.2   4.1e-07   0.00056       1      22 [.     708     729 ..     708     733 .. 0.93
   4 !   11.2   0.1   0.00015       0.2       9      24 ..     752     767 ..     747     768 .. 0.86
   5 !   17.1   0.5     2e-06    0.0028       1      17 [.    1354    1370 ..    1354    1370 .. 0.94

  Alignments for each domain:
  == domain 1  score: 22.1 bits;  conditional E-value: 5.1e-08
                HHHHHH-SS-SSCE-HHHHH CS
   EF-hand_5  3 dtFqaiDlNgDGkIskeELk 22
                 +Fq++D++gDG++++ EL+
  KOO22911.1 22 RLFQRFDTDGDGFLDVAELQ 41
                58*****************7 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 3
                HH-SS-SSCE-HHHHHHHH CS
   EF-hand_5  7 aiDlNgDGkIskeELktlv 25
                + D++g   +++ E+ +lv
  KOO22911.1 62 KYDTDGNHLLDRHEFLELV 80
                5788887778999998875 PP

  == domain 3  score: 19.3 bits;  conditional E-value: 4.1e-07
                 HHHHHHHH-SS-SSCE-HHHHH CS
   EF-hand_5   1 lkdtFqaiDlNgDGkIskeELk 22 
                 lk++F+ iD+NgDG ++ eEL+
  KOO22911.1 708 LKKAFETIDKNGDGLLTEEELE 729
                 7889****************97 PP

  == domain 4  score: 11.2 bits;  conditional E-value: 0.00015
                 -SS-SSCE-HHHHHHH CS
   EF-hand_5   9 DlNgDGkIskeELktl 24 
                 D++g+G Is+ E+ ++
  KOO22911.1 752 DKDGSGEISFNEFVAV 767
                 *************775 PP

  == domain 5  score: 17.1 bits;  conditional E-value: 2e-06
                  HHHHHHHH-SS-SSCE- CS
   EF-hand_5    1 lkdtFqaiDlNgDGkIs 17  
                  +kdtFq++Dl+gDG+I+
  KOO22911.1 1354 FKDTFQRADLDGDGYIT 1370
                  68*************96 PP

>> EF-hand_8  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.8   0.2    0.0022         3      31      48 ..      23      40 ..      20      46 .. 0.87
   2 !   11.4   0.3   0.00016      0.22       2      54 ..      32      82 ..      31      83 .. 0.87
   3 !   24.6   0.4   1.2e-08   1.6e-05       2      51 ..     720     767 ..     719     769 .. 0.94
   4 !    6.4   0.0    0.0057       7.9      32      51 ..    1358    1377 ..    1355    1381 .. 0.81
   5 ?   -1.9   0.0       2.3   3.2e+03       2      16 ..    1401    1415 ..    1401    1425 .. 0.75

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 0.0022
   EF-hand_8 31 lfrefDtdgdGkisfeEF 48
                lf +fDtdgdG ++  E 
  KOO22911.1 23 LFQRFDTDGDGFLDVAEL 40
                89***********99986 PP

  == domain 2  score: 11.4 bits;  conditional E-value: 0.00016
   EF-hand_8  2 kgkItreelrrilrilglkk...glseeevdilfrefDtdgdGkisfeEFcvller 54
                +g ++++el+ +l      +   + s+++v++l ++ Dtdg+  ++  EF++l+ +
  KOO22911.1 32 DGFLDVAELQPML-----LQlgfDASAKKVTELHSKYDTDGNHLLDRHEFLELVLK 82
                899********66.....333467***************************99876 PP

  == domain 3  score: 24.6 bits;  conditional E-value: 1.2e-08
   EF-hand_8   2 kgkItreelrrilrilglkkglseeevdilfrefDtdgdGkisfeEFcvl 51 
                 +g +t eel +++  l+l   + ++++ + +++ D dg+G isf+EF+++
  KOO22911.1 720 DGLLTEEELEDAYERLHLT--MDKQQFLSFIDACDKDGSGEISFNEFVAV 767
                 89***********667***..**************************986 PP

  == domain 4  score: 6.4 bits;  conditional E-value: 0.0057
   EF-hand_8   32 frefDtdgdGkisfeEFcvl 51  
                  f ++D+dgdG+i++   + l
  KOO22911.1 1358 FQRADLDGDGYITCSQVYRL 1377
                  7899*********9766655 PP

  == domain 5  score: -1.9 bits;  conditional E-value: 2.3
   EF-hand_8    2 kgkItreelrrilri 16  
                  ++ I+++e+ ++++i
  KOO22911.1 1401 DDLISQHEFLMFMSI 1415
                  57899****999965 PP

>> SPARC_Ca_bdg  Secreted protein acidic and rich in cysteine Ca binding region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.1   0.0   0.00056      0.77      55     111 ..      19      77 ..       6      79 .. 0.83
   2 !   20.6   0.1     3e-07   0.00041      39     111 ..     691     765 ..     623     767 .. 0.83
   3 ?   -2.1   0.1       3.4   4.6e+03      58      83 ..    1356    1381 ..    1308    1411 .. 0.56

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.00056
  SPARC_Ca_bdg  55 pvawkFsklDtnsdkvlsksELaplrapl..vklehCikpflescDadkdkkislkEwc 111
                    ++  F+++Dt+ d++l+ +EL+p+ ++l  +   + ++++ ++ D+d ++ ++++E+ 
    KOO22911.1  19 RANRLFQRFDTDGDGFLDVAELQPMLLQLgfDASAKKVTELHSKYDTDGNHLLDRHEFL 77 
                   556679******************8777633677788999999*************997 PP

  == domain 2  score: 20.6 bits;  conditional E-value: 3e-07
  SPARC_Ca_bdg  39 elekkeeeknlkeckepvawkFsklDtnsdkvlsksELaplrapl..vklehCikpflescDadkdkkislkEwc 111
                   ++++ke e    e + +++  F+++D+n d++l+++EL++ ++ l      +    f+++cD d  ++is +E++
    KOO22911.1 691 KNVAKEAEAGILEAVGSLKKAFETIDKNGDGLLTEEELEDAYERLhlTMDKQQFLSFIDACDKDGSGEISFNEFV 765
                   444555555555667788889*******************9887621344566789*****************97 PP

  == domain 3  score: -2.1 bits;  conditional E-value: 3.4
  SPARC_Ca_bdg   58 wkFsklDtnsdkvlsksELaplrapl 83  
                      F++ D + d++++ s +  l a+l
    KOO22911.1 1356 DTFQRADLDGDGYITCSQVYRLLAEL 1381
                    45777777777777777766666655 PP

>> PKD_channel  Polycystin cation channel
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.3   0.4   0.00015       0.2     221     266 ..     340     385 ..     333     397 .. 0.88
   2 ?   -1.9   0.1      0.74     1e+03     304     357 ..     393     449 ..     385     454 .. 0.60
   3 ?    2.9   0.1     0.026        36     364     424 ..     540     603 ..     532     604 .. 0.62
   4 ?    0.5   0.8      0.14   1.9e+02     309     359 ..     893     943 ..     866     951 .. 0.62
   5 ?    3.7   2.2     0.015        20     367     426 .]     982    1044 ..     976    1044 .. 0.79
   6 !    4.9   0.3    0.0065       8.9     307     368 ..    1592    1653 ..    1580    1657 .. 0.88
   7 ?   -1.8   0.7      0.66   9.1e+02     395     424 ..    1799    1828 ..    1793    1830 .. 0.85
   8 ?    3.7   3.7     0.015        21     200     264 ..    1919    1985 ..    1909    1991 .. 0.78
   9 !   18.6   7.2   4.4e-07   0.00061     306     425 ..    2007    2150 ..    2001    2151 .. 0.78

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.00015
                  HHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHH CS
  PKD_channel 221 fvlyfvveeilkirkerasylrsvwnlldlaivvlsvvlivlailr 266
                  + ++f++e+++k+   ++ yl ++wn+ld  ivv s +++++ ++ 
   KOO22911.1 340 LNIFFTFEMVIKVVGLGRVYLAEKWNILDGTIVVGSWAALIVEVVM 385
                  6799*********************************999998865 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 0.74
                  HHHHHHHGGGGG-------...--.---------------HHHHHHHHHHHHHHHHHH CS
  PKD_channel 304 lvflttlkllkvlrfnktl...sl.ltktlaralkdvlgfalvivilflayaqlgvll 357
                  +  l +l++l+ lr+ + +   +  + +tl++a  d+ ++ ++i  + + ++ +++ l
   KOO22911.1 393 VTNLRILRVLRPLRVLESIpglRIiINSTLYAA-YDLGSTLMIITFFTFLFGLFLTSL 449
                  444555555555555555411143145666655.589999999999999998887655 PP

  == domain 3  score: 2.9 bits;  conditional E-value: 0.026
                  TTSSHHHHHHHHHHHHTT---HH.....HHHHH-TTHHHHHHHHHHHHHHHHHHHHHHHHHHT-XX CS
  PKD_channel 364 nfsnlvksiltlfrlilgdfqyt.....elesgnrvLGpllllalvflvifillnlflaiindsye 424
                   f n+  ++l +f++ +g ++++      ++  +      +++++ ++  ++l+n+f+a++  +ye
   KOO22911.1 540 SFDNFPLAVLSVFQIWCG-VDWSimqnlVVDTQGAAWE-SVFIIMYAIGSWVLMNVFIAVLGTAYE 603
                  566666666666665554.3444333322222222222.2477888899************99996 PP

  == domain 4  score: 0.5 bits;  conditional E-value: 0.14
                  HHGGGGG------------------------HHHHHHHHHHHHHHHHHHSS CS
  PKD_channel 309 tlkllkvlrfnktlslltktlaralkdvlgfalvivilflayaqlgvllfG 359
                  + kll+ l+  +  + l   ++++l +v+ + +++vi ++ +a+lg+ l++
   KOO22911.1 893 LHKLLYSLSELSGTTALLDQIYASLVAVAWMLVALVIWIFLIAILGMHLYS 943
                  222232222222233333457889999999999999999999999876654 PP

  == domain 5  score: 3.7 bits;  conditional E-value: 0.015
                   SHHHHHHHHHHHHTT---HHHHHHH-TTHHHHHHHHHHHHHH...HHHHHHHHHHHHT-XXXX CS
  PKD_channel  367 nlvksiltlfrlilgdfqytelesgnrvLGpllllalvflvi...fillnlflaiindsyeev 426 
                    l  si+ +f+++ +d+    +     v Gpl ++ + ++vi   f+++n+fl+i+ ++++++
   KOO22911.1  982 FLLISIVSVFQTVTQDVWSRVMWDTYLVSGPLAFIFFPAVVIsgnFVMVNMFLSILLSTFSSM 1044
                   56667888888888877666666777788999999999999866689************9976 PP

  == domain 6  score: 4.9 bits;  conditional E-value: 0.0065
                   HHHHGGGGG------------------------HHHHHHHHHHHHHHHHHHSSSS-STTSSH CS
  PKD_channel  307 lttlkllkvlrfnktlslltktlaralkdvlgfalvivilflayaqlgvllfGtqasnfsnl 368 
                   l+ l++l + + +++l+++++ +ar+l++vl + +++v   l +a +gv lfG  +s+  +l
   KOO22911.1 1592 LASLRALMLFSRFNELKHISESIARSLPNVLIALILLVAGWLIFALIGVELFGGGTSQCAHL 1653
                   777888888888889**************************************988876665 PP

  == domain 7  score: -1.8 bits;  conditional E-value: 0.66
                   HHHHHHHHHHHHHHHHHHHHHHHHHHT-XX CS
  PKD_channel  395 LGpllllalvflvifillnlflaiindsye 424 
                   +  l++++++++ +++ + +f aii ++ e
   KOO22911.1 1799 IPALYFILFIVFGVWLSVSVFTAIIISELE 1828
                   5579*********************98765 PP

  == domain 8  score: 3.7 bits;  conditional E-value: 0.015
                   -----SHHHHHHHHH.HHHHHHHHHHHHHHHH-------.-------HHHHHHHHHHHHHHHHHHHH CS
  PKD_channel  200 Llryvtklslfllli.evvfvvfvlyfvveeilkirker.asylrsvwnlldlaivvlsvvlivlai 264 
                   L  y++ ++ ++l i e++ + fv +f++e +++i      +y r+ wn ld+++ v+sv+   + i
   KOO22911.1 1919 LTLYSDPINRTVLQIyELLDYGFVALFAIEAMVRIGALTfIEYWRNPWNRLDFVLAVVSVIFSFVTI 1985
                   55555555555544415666899**************999******************998776665 PP

  == domain 9  score: 18.6 bits;  conditional E-value: 4.4e-07
                   HHHHHGGGGG------------------------HHHHHHHHHHHHHHHHHHSSS...........S-STTSSHHHHHHHHHHHHTT---HH.... CS
  PKD_channel  306 flttlkllkvlrfnktlslltktlaralkdvlgfalvivilflayaqlgvllfGt...........qasnfsnlvksiltlfrlilgdfqyt.... 386 
                   ++  ++++++  +++ l  l +t+  a++ +l ++  i+il ++ya +g++l Gt            ++nf++  +++ +lfr+  gd   +    
   KOO22911.1 2007 CFRAIRIVRLAGMSPSLLKLLRTIIFAVPSILYTSAWIFILTFSYAHFGMVLLGTiiydhegdglsRHANFETAFRAFSALFRMATGDAWGAmlad 2102
                   667788889999999999***********************************9744433333333577888889999999988877754447777 PP

                   ........HHHHH-.TTHHHHHHHHHHHHHHHHHHHHHHHHHHT-XXX CS
  PKD_channel  387 ........elesgn.rvLGpllllalvflvifillnlflaiindsyee 425 
                            +e         ++++a++++v+++l+ +f+ai++dsy++
   KOO22911.1 2103 alnnphvaRIETRPpDSAVAVFFIAYIAFVAWVLIAMFVAIVQDSYAT 2150
                   77667777443322123446899***********************85 PP

>> GPHH  Voltage-dependent L-type calcium channel, IQ-associated
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   8.9e-05      0.12       2      34 ..    2167    2199 ..    2166    2202 .. 0.96

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 8.9e-05
        GPHH    2 FvrvWaeyDPeAtgrikvqdmyellrrlspPLG 34  
                  F+r+W e+D e t ++   d+  ll + +pPL+
  KOO22911.1 2167 FQRKWLEFDRENTSYMRTIDLGLLLYTCKPPLV 2199
                  9******************************95 PP

>> EF-hand_9  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   0.1   0.00067      0.93       1      61 [.      21      79 ..      21      84 .. 0.93
   2 ?   -1.3   0.0         2   2.8e+03       5      24 ..     749     768 ..     746     772 .. 0.85
   3 ?   -0.4   0.0       1.1   1.5e+03       3      38 ..    1357    1392 ..    1355    1415 .. 0.76

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.00067
   EF-hand_9  1 etvFevcDtqktGrVpvsrlidyLravtaqdpeeseLeelakelDPdgedasvdldtflrv 61
                +++F+ +Dt+  G   v++l  +L + +  d +  ++ el +++D dg+  ++d   fl+ 
  KOO22911.1 21 NRLFQRFDTDGDGFLDVAELQPMLLQLGF-DASAKKVTELHSKYDTDGN-HLLDRHEFLEL 79
                689**************************.9999**************9.99999999865 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 2
   EF-hand_9   5 evcDtqktGrVpvsrlidyL 24 
                 ++cD +  G++   + +++L
  KOO22911.1 749 DACDKDGSGEISFNEFVAVL 768
                 79********9999888877 PP

  == domain 3  score: -0.4 bits;  conditional E-value: 1.1
   EF-hand_9    3 vFevcDtqktGrVpvsrlidyLravtaqdpeeseLe 38  
                  +F+  D +  G ++ s++  +L   +++  +e+  e
  KOO22911.1 1357 TFQRADLDGDGYITCSQVYRLLAELGEEPKNEATWE 1392
                  79999*****************99999555555444 PP

>> TM_helix  Conserved TM helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   1.4   9.5e-05      0.13       9      31 ..    1613    1635 ..    1606    1639 .. 0.87
   2 ?    0.4   0.3      0.49   6.8e+02      23      38 ..    2129    2144 ..    2120    2155 .. 0.74

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 9.5e-05
                  HHHTTHSHHHHHHHHHHHHHHHH CS
    TM_helix    9 ellsflPnLvgAilILlvGwiiA 31  
                  +++  lPn+++A+++L+ Gw+i 
  KOO22911.1 1613 SIARSLPNVLIALILLVAGWLIF 1635
                  677889***************95 PP

  == domain 2  score: 0.4 bits;  conditional E-value: 0.49
                  HHHHHHHHHHHHHHHH CS
    TM_helix   23 ILlvGwiiAkfvsrlv 38  
                  I++v+w+++ +   +v
  KOO22911.1 2129 IAFVAWVLIAMFVAIV 2144
                  8999999998866666 PP

>> DUF3810  Protein of unknown function (DUF3810)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.5   0.0    0.0032       4.4      48     104 ..     567     624 ..     536     709 .. 0.76
   2 ?   -4.6   0.8       7.8   1.1e+04      28      77 ..    1937    1986 ..    1933    1999 .. 0.48
   3 ?    1.7   0.1     0.094   1.3e+02      10      94 ..    2078    2160 ..    2074    2179 .. 0.69

  Alignments for each domain:
  == domain 1  score: 6.5 bits;  conditional E-value: 0.0032
     DUF3810  48 krkkkkkrllkvllrvllvllvvy.flftllwglnYyreplserlglkkeeyseeela 104
                     + +++ +v++ + ++ ++v+  +f+++ g  Y re+l++   lk++e ++  + 
  KOO22911.1 567 VVDTQGAAWESVFIIMYAIGSWVLmNVFIAVLGTAYEREKLHQLQRLKRREADATHVL 624
                 2345567788888888888888752699*******************99998866554 PP

  == domain 2  score: -4.6 bits;  conditional E-value: 7.8
     DUF3810   28 livllillvilylvlai...klkkrkkkkkrllkvllrvllvllvvyflftll 77  
                  l + +++l+++  ++ i   +     + +++ ++ l  vl+v++v++ + t+ 
  KOO22911.1 1937 LDYGFVALFAIEAMVRIgalT---FIEYWRNPWNRLDFVLAVVSVIFSFVTII 1986
                  555555555555555553221...33333344444445555555544444443 PP

  == domain 3  score: 1.7 bits;  conditional E-value: 0.094
     DUF3810   10 skilsrlsglfpFSvgellivllillvilylvlaiklkkrkkkkkrllkvllrvllvllvvyflftllwglnYyreplserlglk 94  
                   ++++++s lf ++ g+ + ++l+ ++    v  i  ++r   ++ ++ ++  +++v+ v++++f++     Y +++ +e +++k
  KOO22911.1 2078 ETAFRAFSALFRMATGDAWGAMLADALNNPHVARI--ETRPPDSAVAVFFIAYIAFVAWVLIAMFVAIVQDSYATSNYEEGISIK 2160
                  56788999999999999999888777777777777..444555445555555555555555666777777777777777766554 PP

>> Folliculin  Vesicle coat protein involved in Golgi to plasma membrane transport
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.8   0.8       7.2     1e+04      98     126 ..     151     217 ..     146     258 .. 0.44
   2 ?   10.3   0.3   0.00033      0.46      84     126 ..    1033    1104 ..    1019    1154 .. 0.61

  Alignments for each domain:
  == domain 1  score: -3.8 bits;  conditional E-value: 7.2
  Folliculin  98 eiqalaeaelereskeeeassaassssa.......................................l 126
                 ++q+ a +  er+++++++++ a+++ +                                       l
  KOO22911.1 151 RLQQHALSGGERREERSASAEDAARE-HgtapgtapalgkekksasfspevltcgneraetgtnassL 217
                 55555555555555533332222222.13455556666665555555555555555555555544431 PP

  == domain 2  score: 10.3 bits;  conditional E-value: 0.00033
  Folliculin   84 awsfiveafeklaaeiqalaeaelereskeeeassaassssa.............................l 126 
                    s++ ++f+++a++i +++++e   + ++ee+++++++++                               
  KOO22911.1 1033 FLSILLSTFSSMAKQIASKVSQETAARLAQEEEEQRKDRHALkaqrdadvkaarfshssgsyaqntdtqilR 1104
                  468899**************9999888776665554444443445555555555555555555544444440 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (2388 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       993  (0.0553851); expected 358.6 (0.02)
Passed bias filter:                      539  (0.030063); expected 358.6 (0.02)
Passed Vit filter:                        61  (0.00340231); expected 17.9 (0.001)
Passed Fwd filter:                        14  (0.000780858); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 1.26u 0.34s 00:00:01.60 Elapsed: 00:00:00.48
# Mc/sec: 14996.87
//
Query:       KOO22912.1  [L=366]
Description: pyridine nucleotide-disulfide oxidoreductase family protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.5e-25   89.3   1.1    3.4e-25   88.9   1.1    1.2  1  Pyr_redox_2     Pyridine nucleotide-disulphide oxidoreductase
    4.7e-08   33.5   1.2    0.00015   22.2   0.0    2.4  2  Pyr_redox       Pyridine nucleotide-disulphide oxidoreductase
    2.4e-06   27.0   2.0    5.9e-05   22.5   0.0    2.8  2  Pyr_redox_3     Pyridine nucleotide-disulphide oxidoreductase
    0.00034   19.9   1.8     0.0016   17.7   0.1    2.5  3  K_oxygenase     L-lysine 6-monooxygenase (NADPH-requiring)
    0.00039   19.4   4.5      0.018   13.9   0.9    2.2  2  Trp_halogenase  Tryptophan halogenase
     0.0024   18.1   1.0       0.68   10.2   0.3    2.6  2  NAD_binding_8   NAD(P)-binding Rossmann-like domain
     0.0031   16.6   2.8        0.8    8.7   0.4    2.8  3  Lycopene_cycl   Lycopene cyclase protein
     0.0049   16.9   3.4        1.4    8.9   0.0    2.9  3  NAD_binding_9   FAD-NAD(P)-binding
     0.0087   15.7   7.0       0.92    9.0   3.2    2.7  3  DAO             FAD dependent oxidoreductase
  ------ inclusion threshold ------
          4    6.6   6.2        4.3    6.5   1.6    2.3  2  FAD_binding_3   FAD binding domain


Domain annotation for each model (and alignments):
>> Pyr_redox_2  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   88.9   1.1   1.9e-28   3.4e-25       2     279 ..       3     291 ..       2     305 .. 0.79

  Alignments for each domain:
  == domain 1  score: 88.9 bits;  conditional E-value: 1.9e-28
                  SEEEE--SHHHHHHHHHHHH....HTS-EEEEETTHCHHHCSHHHHCHHHHHHHHHHHHHHHHHCHHHHCCCCHCCTCEEEEESCEEEEETEEECTCE CS
                  xxxxxxxxxxxxxxxxxxxx....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2   2 dvvviGgGpAGlaaaltlaq....agakvtlvelegtclnggcllskallgvaedaeiasevvkklnqgielllgeevvkidpgkkkvklekkkegde 95 
                  +vv++GgG +G+ +a+ l+       ++vtlv    +++ +       l+  +e+ + ++  v    +g +++ g +++++  ++  v   + + ++ 
   KOO22912.1   3 RVVIVGGGLGGVFTAKALKGaiskGVLEVTLV-TPAEFVEWPGGHIRGLAVPKEADRSFAPSVVACVKGAKVVQG-KAISVTSDAVMVAS-NGQ-SEP 96 
                  8******************98874589*****.888898885555444444444444444555667778999999.89999888833333.333.677 PP

                  EEEEESEEEE---EEE-BC...TCTTC.TTBEECCSECHHHHHHCCSS-T.SEEEEES-SHHHHHHHHHHHHH..T-EEEEEESSSSSSTTS-HHHHH CS
                  xxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2  96 ekiaydklvlAtGssprdl...gipGvaenvgklvrtldsaealklkllp.krivvvGgGyiGvElAaalakl..gkevtlveardrllraldkelsa 187
                   ++ yd lv+AtG++  ++    ++   en++ l + +++ +  +++l   k +++vGgG++G+ElA+ ++ +  + +vtlv  +++   ++ +++++
   KOO22912.1  97 VTVPYDLLVIATGGRYANPttaFLKSP-ENATGLKERVAEMQVKSSALASaKTVTIVGGGATGIELACDICHFypQTKVTLVSKGTIGG-MYHPKVQK 192
                  89***********98888833344444.78888878888888777777778999***************999977778*****988886.89999*** PP

                  HHHHHHHHT.TEEEEESCEEEEEEETTEEEEEEETTSCEEEESEEEE-S-EEES-HHCS.HCCT-EEEETTEEE--TTS.BES.STTEEE-GGGC... CS
                  xxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxx.xxx.xxxxxxxxxxx... RF
  Pyr_redox_2 188 aleealeke.GvevklgtsvkeidgngeklevvledgeeidadlvvvavGvrpstelle.eklglelderggivvdefl.rtn.vpgiyaiGDva... 278
                  +++++l++  +  +k  t+v           +  e+  e++ad + + +G++p+te+l+  +l  +ld rg ++vd+    ++   +++aiGD++   
   KOO22912.1 193 QIMKHLTRLpNLSIKSDTVV-----------TPGEEPAELQADVLYYTTGFTPNTEFLQgGSLASALDARGMLKVDRDTlLVQdQSKVFAIGDIItpg 279
                  ********999999988888...........34567999*************************************9875455499********9655 PP

                  ...........T CS
                  ...........x RF
  Pyr_redox_2 279 ...........g 279
                              
   KOO22912.1 280 lvespftsgyiT 291
                  555555555544 PP

>> Pyr_redox  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.9   1.0    0.0012       2.2       1      30 [.       3      36 ..       3      42 .. 0.79
   2 !   22.2   0.0   8.5e-08   0.00015       2      64 ..     149     213 ..     148     221 .. 0.87

  Alignments for each domain:
  == domain 1  score: 8.9 bits;  conditional E-value: 0.0012
                EEEEECSSHHHHHHHHHHHH.TT...SEEEEEES CS
   Pyr_redox  1 kvvvvGgGyiglElAgalae.lg...kkVtvver 30
                +vv+vGgG+ g+  A+al+  +     +Vt+v  
  KOO22912.1  3 RVVIVGGGLGGVFTAKALKGaISkgvLEVTLVTP 36
                79****************7744433358888875 PP

  == domain 2  score: 22.2 bits;  conditional E-value: 8.5e-08
                 EEEECSSHHHHHHHHHHHHTT..SEEEEEESSSSSSTTSSHHHHHHHHHHHHHT.TEEEECSEEEE CS
   Pyr_redox   2 vvvvGgGyiglElAgalaelg..kkVtvversdkllrllDeeaskilqeklekn.gievllntkve 64 
                 v++vGgG +g+ElA+ + ++    kVt+v  + ++  ++ ++++k ++++l+++ +  +  +t+v+
  KOO22912.1 149 VTIVGGGATGIELACDICHFYpqTKVTLVSKG-TIGGMYHPKVQKQIMKHLTRLpNLSIKSDTVVT 213
                 89*****************8766899999876.7888**************998888888887775 PP

>> Pyr_redox_3  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.9   0.6     0.059     1e+02       1      40 [.       5      43 ..       5      46 .. 0.76
   2 !   22.5   0.0   3.3e-08   5.9e-05     128     279 ..     104     244 ..      93     263 .. 0.68

  Alignments for each domain:
  == domain 1  score: 1.9 bits;  conditional E-value: 0.059
  Pyr_redox_3  1 iIiGaGPaGlaaaielkkagledylilEkg.nignsiyryp 40
                 +I+G+G  G+ +a +lk a  +   +lE      + + ++p
   KOO22912.1  5 VIVGGGLGGVFTAKALKGAISK--GVLEVTlVTPAEFVEWP 43
                 7***************988764..67887744445566666 PP

  == domain 2  score: 22.5 bits;  conditional E-value: 3.3e-08
  Pyr_redox_3 128 viiAt.GefdkPnklnipGeek.....lvkhyskvkefhkyagqkvvViGgknSavDaAlelvrk..gaeVtvvtrgseiekeesdpsyslkpdienr 217
                  ++iAt G++ +P +   + +e+       +   +vk+ +  + + v+++Gg+ ++++ A++++      +Vt+v +g+ i  +         p ++++
   KOO22912.1 104 LVIATgGRYANPTTAFLKSPENatglkERVAEMQVKSSALASAKTVTIVGGGATGIELACDICHFypQTKVTLVSKGT-IGGM-------YHPKVQKQ 193
                  56666269****9998888875333224556777888888999******************998766999****9997.4443.......23444444 PP

  Pyr_redox_3 218 leelvkeekikvlfnaevkeikekeeeykvktedgkkvevkddvvla.tGykpdlsflkkslf 279
                  + +      ++ l n ++k+ +       v t+ ++  e + dv++  tG++p+++fl+   +
   KOO22912.1 194 IMKH-----LTRLPNLSIKSDT-------VVTPGEEPAELQADVLYYtTGFTPNTEFLQGGSL 244
                  4332.....3334443333322.......33444466777788888879********998333 PP

>> K_oxygenase  L-lysine 6-monooxygenase (NADPH-requiring)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.3   0.1      0.17   3.1e+02     192     225 ..       2      37 ..       1      41 [. 0.75
   2 !   17.7   0.1   8.7e-07    0.0016     147     225 ..      99     180 ..      69     184 .. 0.72
   3 ?   -1.8   0.0      0.74   1.3e+03     324     341 ..     216     233 ..     195     234 .. 0.83

  Alignments for each domain:
  == domain 1  score: 0.3 bits;  conditional E-value: 0.17
  K_oxygenase 192 kriaVvGsGqSaaeifedllrrqkk..velklvtrs 225
                   r+++vG+G  +   ++ l    +k   e++lvt +
   KOO22912.1   2 SRVVIVGGGLGGVFTAKALKGAISKgvLEVTLVTPA 37 
                  58********99888888877754434778877765 PP

  == domain 2  score: 17.7 bits;  conditional E-value: 8.7e-07
  K_oxygenase 147 learnlvlgvGtepkiPevleklegkervvHss...eylerkeellakkriaVvGsGqSaaeifedllrrqkkvelklvtrs 225
                  +    lv+++G++ + P+++   ++++    ++   e+  + ++l+++k++++vG+G ++ e++ d+ + +++++++lv+++
   KOO22912.1  99 VPYDLLVIATGGRYANPTTAFLKSPENATGLKErvaEMQVKSSALASAKTVTIVGGGATGIELACDICHFYPQTKVTLVSKG 180
                  55556899999999999875433322222222201133334444999********************************986 PP

  == domain 3  score: -1.8 bits;  conditional E-value: 0.74
  K_oxygenase 324 geeetlevdavvlATGYr 341
                  +e  +l++d++++ TG++
   KOO22912.1 216 EEPAELQADVLYYTTGFT 233
                  567899**********96 PP

>> Trp_halogenase  Tryptophan halogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.9   0.9     1e-05     0.018       1      36 [.       3      39 ..       3      46 .. 0.90
   2 !    6.8   0.1    0.0015       2.6       2      37 ..     149     183 ..     148     187 .. 0.91

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 1e-05
                    EEEEE--SHHHHHHHHHHHHHTTTS.SEEEEEE-SSS CS
  Trp_halogenase  1 kivivGGGtaGwlaAaalakalkgk.levtlveseei 36
                    ++vivGGG  G  +A al+ a+++  levtlv  +e+
      KOO22912.1  3 RVVIVGGGLGGVFTAKALKGAISKGvLEVTLVTPAEF 39
                    69********************9999******87776 PP

  == domain 2  score: 6.8 bits;  conditional E-value: 0.0015
                     EEEE--SHHHHHHHHHHHHHTTTSSEEEEEE-SSS- CS
  Trp_halogenase   2 ivivGGGtaGwlaAaalakalkgklevtlveseeig 37 
                     ++ivGGG  G   A+ + +   + ++vtlv + +ig
      KOO22912.1 149 VTIVGGGATGIELACDICHFYPQ-TKVTLVSKGTIG 183
                     89******************955.9*******9998 PP

>> NAD_binding_8  NAD(P)-binding Rossmann-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.2   0.3   0.00038      0.68       1      24 [.       6      33 ..       6      55 .. 0.83
   2 !    6.0   0.0    0.0079        14       1      33 [.     151     184 ..     151     199 .. 0.80

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.00038
                   EE--SHHHHHHHHHHHCC...TE.EEEE CS
  NAD_binding_8  1 IvGaGlsGlvaAylLaka...gf.dvll 24
                   IvG+Gl+G  +A +L+ a   g+ +v+l
     KOO22912.1  6 IVGGGLGGVFTAKALKGAiskGVlEVTL 33
                   9**************9654445556666 PP

  == domain 2  score: 6.0 bits;  conditional E-value: 0.0079
                    EE--SHHHHHHHHHHHC.C.TEEEEEE-SSSSSSG CS
  NAD_binding_8   1 IvGaGlsGlvaAylLak.a.gfdvlllekrdrlGG 33 
                    IvG+G++G  +A+ +   + + +v+l+ k+  +GG
     KOO22912.1 151 IVGGGATGIELACDICHfYpQTKVTLVSKG-TIGG 184
                    9**********9999874357789988877.5666 PP

>> Lycopene_cycl  Lycopene cyclase protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.7   0.4   0.00045       0.8       2      42 ..       4      46 ..       3      53 .. 0.92
   2 ?   -0.8   0.0      0.33     6e+02      97     143 ..      67     111 ..      58     132 .. 0.74
   3 !    6.8   0.0    0.0016       2.9       2      34 ..     149     179 ..     148     223 .. 0.87

  Alignments for each domain:
  == domain 1  score: 8.7 bits;  conditional E-value: 0.00045
  Lycopene_cycl  2 vvviGaGpAglslAarl..teakpglkvvlieaspsllfpnny 42
                   vv++G+G+ g+  A+ l  + +k  l+v+l+ +++ + +p+ +
     KOO22912.1  4 VVIVGGGLGGVFTAKALkgAISKGVLEVTLVTPAEFVEWPGGH 46
                   8**************9977788999*********999999876 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 0.33
  Lycopene_cycl  97 lvengvklleakvesveeeeageslvvleggr...kirarlvvdarglas 143
                    +v +g+k +++k+ sv+ + +   +v+ +g     +++  l v a+g ++
     KOO22912.1  67 CV-KGAKVVQGKAISVTSDAV---MVASNGQSepvTVPYDLLVIATG-GR 111
                    55.899999999999999998...44444443555777777777777.44 PP

  == domain 3  score: 6.8 bits;  conditional E-value: 0.0016
  Lycopene_cycl   2 vvviGaGpAglslAarlteakpglkvvlieasp 34 
                    v ++G+G+ g+ lA  + +  p+ kv+l+   +
     KOO22912.1 149 VTIVGGGATGIELACDICHFYPQTKVTLVS--K 179
                    78**************************94..3 PP

>> NAD_binding_9  FAD-NAD(P)-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.9   0.5    0.0032       5.7       1      37 [.       5      40 ..       5      49 .. 0.86
   2 ?   -0.2   0.0      0.48   8.6e+02     118     154 ..      72     109 ..      58     111 .. 0.63
   3 !    8.9   0.0   0.00076       1.4       2      47 ..     151     192 ..     150     214 .. 0.77

  Alignments for each domain:
  == domain 1  score: 6.9 bits;  conditional E-value: 0.0032
  NAD_binding_9  1 aivGaGprGlavlerLlarakkkspleitlfdpsepg 37
                   +ivG+G  G+ ++++L     +k  le+tl+ p+e+ 
     KOO22912.1  5 VIVGGGLGGVFTAKALKGAI-SKGVLEVTLVTPAEFV 40
                   7***************9996.9999******998873 PP

  == domain 2  score: -0.2 bits;  conditional E-value: 0.48
  NAD_binding_9 118 evhraevvdleeradgqavlladg.aslaadaVvLAlG 154
                    +v+++++++++ +a  +a   +++  ++ +d +v+A+G
     KOO22912.1  72 KVVQGKAISVTSDAVMVASNGQSEpVTVPYDLLVIATG 109
                    56667777766655444322222224689999999999 PP

  == domain 3  score: 8.9 bits;  conditional E-value: 0.00076
  NAD_binding_9   2 ivGaGprGlavlerLlarakkkspleitlfdpsepgagrvwrtdqs 47 
                    ivG+G++G+ ++  +++      ++++tl+ + ++g g+ + + q+
     KOO22912.1 151 IVGGGATGIELACDICHFY---PQTKVTLVSKGTIG-GMYHPKVQK 192
                    9****************95...999******99998.655544443 PP

>> DAO  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.0   3.2   0.00051      0.92       1      29 [.       3      37 ..       3      49 .. 0.80
   2 ?   -2.0   0.0       1.1     2e+03     159     202 ..      69     110 ..      60     123 .. 0.58
   3 !    7.6   0.0    0.0014       2.6       2      33 ..     149     183 ..     148     250 .. 0.86

  Alignments for each domain:
  == domain 1  score: 9.0 bits;  conditional E-value: 0.00051
                EEEEECTSHHHHHHHHHHHHT...T...EEEEESS CS
         DAO  1 dvviiGGGiiGlstAyeLarr...g...Vtllekg 29
                +vvi+GGG  G++tA +L  +   g   Vtl+  +
  KOO22912.1  3 RVVIVGGGLGGVFTAKALKGAiskGvleVTLVTPA 37
                59****************43333369999999776 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 1.1
                 TT-EEEESECEEEEEEEETCEEEEEEECTEEEE....EEEEEEE--GG CS
         DAO 159 lGveilegtevtgleeedgkvwgverttpgend....aadavVnaaGa 202
                 +G+++++g ++ ++  +   v+     ++g+ +     +d +V+a+G 
  KOO22912.1  69 KGAKVVQG-KAISVTSD--AVMVA---SNGQSEpvtvPYDLLVIATGG 110
                 46777777.55555322..23322...222221122355667777774 PP

  == domain 3  score: 7.6 bits;  conditional E-value: 0.0014
                 EEEECTSHHHHHHHHHHHHT..T...EEEEESSSSTT CS
         DAO   2 vviiGGGiiGlstAyeLarr..g...Vtllekgdiag 33 
                 v i+GGG +G+  A +   +  +   Vtl+ kg  +g
  KOO22912.1 149 VTIVGGGATGIELACDI-CHfyPqtkVTLVSKG-TIG 183
                 89***************.44354567******9.666 PP

>> FAD_binding_3  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.5   1.6    0.0024       4.3       3      29 ..       3      28 ..       1      36 [. 0.82
   2 ?    1.9   0.2     0.059     1e+02       3      17 ..     148     162 ..     146     167 .. 0.89

  Alignments for each domain:
  == domain 1  score: 6.5 bits;  conditional E-value: 0.0024
                   EEEEE--SHHHHHHHHHHHHTTHHEEE CS
  FAD_binding_3  3 dVlIVGaGpaGlmlallLseaGvrvvl 29
                    V+IVG+G+ G+ +a+ L+ a ++  +
     KOO22912.1  3 RVVIVGGGLGGVFTAKALKGA-ISKGV 28
                   69***************9877.66544 PP

  == domain 2  score: 1.9 bits;  conditional E-value: 0.059
                    EEEEE--SHHHHHHH CS
  FAD_binding_3   3 dVlIVGaGpaGlmla 17 
                    +V IVG+G +G+ la
     KOO22912.1 148 TVTIVGGGATGIELA 162
                    699********9887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (366 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       394  (0.0219756); expected 358.6 (0.02)
Passed bias filter:                      343  (0.019131); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.50u 0.24s 00:00:00.74 Elapsed: 00:00:00.40
# Mc/sec: 2769.04
//
Query:       KOO22913.1  [L=920]
Description: methyltransferase type 11 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      3e-11   43.9   0.1    1.2e-10   42.0   0.0    2.1  2  Methyltransf_25  Methyltransferase domain
      7e-08   33.0   0.1    2.4e-07   31.3   0.0    2.0  2  Methyltransf_11  Methyltransferase domain
    2.5e-07   31.4   0.0    2.3e-06   28.3   0.0    2.2  2  Methyltransf_12  Methyltransferase domain
    1.2e-06   28.4   0.0    1.2e-05   25.2   0.0    2.2  2  Methyltransf_23  Methyltransferase domain
  ------ inclusion threshold ------
      0.025   14.2   0.0      0.054   13.1   0.0    1.5  1  TPMT             Thiopurine S-methyltransferase (TPMT)
      0.027   13.7   0.0      0.049   12.9   0.0    1.3  1  CMAS             Mycolic acid cyclopropane synthetase
      0.038   12.7   0.7      0.068   11.8   0.7    1.3  1  Hamartin         Hamartin protein
      0.065   12.7   0.0       0.43   10.0   0.0    1.9  2  CheR             CheR methyltransferase, SAM binding domain


Domain annotation for each model (and alignments):
>> Methyltransf_25  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.0       4.9   1.1e+04      15      44 ..      32      60 ..      27      75 .. 0.63
   2 !   42.0   0.0   5.2e-14   1.2e-10       4      97 .]     602     701 ..     599     701 .. 0.87

  Alignments for each domain:
  == domain 1  score: -2.8 bits;  conditional E-value: 4.9
                     HHCTSTSSEEEEEESSHHH..HHHHHHHHHHT CS
  Methyltransf_25 15 lakrlgkakvtgvDiseem..leaareraeee 44
                     la+    ++ +g+D+++ +  l+aa++ ae+e
       KOO22913.1 32 LADC---CNHIGIDLAQLAapLDAAARAAEAE 60
                     4444...5788999987552356666666554 PP

  == domain 2  score: 42.0 bits;  conditional E-value: 5.2e-14
                      ET-TTSHHHHHHHCTSTSSEEEEEESSHHHHHHHHHHHHHTTT.....TEEEEESBCCGBSS.STTTEEEEEEESTGGGSSHHHHHHHHHHHHH CS
  Methyltransf_25   4 lGcGtGrltlalakrlgkakvtgvDiseemleaareraeeegl.....nvefvqgdaedlpf.edgsfDlvvssgalhhlsdedlekalkeiar 91 
                      +GcG+G+ +++++  + + ++t++D+s+  l+ a+++++++ +     +v+f ++d+ +l       + lv+++g+lhh+++ d+++al+++a 
       KOO22913.1 602 AGCGSGHQVAQALLSYDHVSITAIDLSPLTLAFAHHKLHARWPeetarRVRFCVADVLALTTaRLPPVELVCCIGMLHHVPRVDVPRALEKLAG 695
                      7*****977776666678*****************9998843345579***********98526669******999****************** PP

                      HEEEEE CS
  Methyltransf_25  92 vLkpgG 97 
                      +L +gG
       KOO22913.1 696 ALLEGG 701
                      999998 PP

>> Methyltransf_11  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.0         5   1.1e+04      13      34 ..      29      54 ..      25      78 .. 0.59
   2 !   31.3   0.0   1.1e-10   2.4e-07       3      94 ..     602     703 ..     600     705 .. 0.88

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 5
                     HHH.HTTSEEEEEES-HHHH...HHH CS
  Methyltransf_11 13 ala.krgarvvgvDlskeml...kla 34
                     al+   +++ +g+Dl++ +    ++a
       KOO22913.1 29 ALElADCCNHIGIDLAQLAApldAAA 54
                     55534568889999887766553222 PP

  == domain 2  score: 31.3 bits;  conditional E-value: 1.1e-10
                      ET-TTSHHHHHHHHTT..SEEEEEES-HHHHHHHHHHCCHHT-.....EEEETTEECCCT.SS-TT-EEEEEEES-CCC-..CCHHHHHHHHHH CS
  Methyltransf_11   3 vGcGtGrlaealakrg..arvvgvDlskemlklakekaseegl.....kvefvvadaekl.pfednsfDlvvssevlhhv..edpekalkeiaR 86 
                      +GcG+G  +++    +   +++++Dls+ +l+ a++k + + +     +v+f vad+  l   +   + lv++  +lhhv   d+ +al+++a 
       KOO22913.1 602 AGCGSGHQVAQALLSYdhVSITAIDLSPLTLAFAHHKLHARWPeetarRVRFCVADVLALtTARLPPVELVCCIGMLHHVprVDVPRALEKLAG 695
                      7*****9988888666689***************888888877889************994444478*************877*********** PP

                      HEEEEEEE CS
  Methyltransf_11  87 vLkpgGll 94 
                       L  gG+l
       KOO22913.1 696 ALLEGGVL 703
                      ******87 PP

>> Methyltransf_12  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.3   0.0      0.54   1.2e+03      19      79 ..      34     106 ..      24     130 .. 0.60
   2 !   28.3   0.0     1e-09   2.3e-06       3      99 .]     602     703 ..     600     703 .. 0.87

  Alignments for each domain:
  == domain 1  score: 0.3 bits;  conditional E-value: 0.54
  Methyltransf_12  19 pdieytgvDispsai.edakeklakrennnnnnvelealdlldldgg............ssfDlvvasnvlhhl 79 
                        ++ +g+D+ + a   da+++ a+ e++ +++ +l+ + ++++ g             s+fD  +as vl + 
       KOO22913.1  34 DCCNHIGIDLAQLAApLDAAARAAEAEEE-TAQPHLKRQRSASDVGDvlpgerravldvSAFDPHTASAVLTCA 106
                      55677788888888864555555555543.34444444433333333466688888888888888888888776 PP

  == domain 2  score: 28.3 bits;  conditional E-value: 1e-09
  Methyltransf_12   3 iGcGtGsllralleklpdieytgvDispsaiedakekla.krennnnnnvelealdlldldgg..ssfDlvvasnvlhhl..kdirevldnirk 91 
                       GcG+G+ ++  l +  ++++t++D+sp  ++ a  kl+ ++ ++ + +v++ + d+l l       + lv +++ lhh+   d+ ++l++++ 
       KOO22913.1 602 AGCGSGHQVAQALLSYDHVSITAIDLSPLTLAFAHHKLHaRWPEETARRVRFCVADVLALTTArlPPVELVCCIGMLHHVprVDVPRALEKLAG 695
                      7******999999999***************87777765156777888899999998888777889**************988999******** PP

  Methyltransf_12  92 lLkpgGrl 99 
                      +L  gG+l
       KOO22913.1 696 ALLEGGVL 703
                      ******87 PP

>> Methyltransf_23  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.2   0.0   5.5e-09   1.2e-05      27     120 ..     600     708 ..     575     766 .. 0.80
   2 ?    0.5   0.0      0.21   4.7e+02     144     163 ..     819     838 ..     784     840 .. 0.90

  Alignments for each domain:
  == domain 1  score: 25.2 bits;  conditional E-value: 5.5e-09
  Methyltransf_23  27 LdiGcGtG.illevl.rengfsvtgvDlspeaveiaekakkaqkdqfdeqeaaepqg....................kfdlIvlrevlehvp.. 96 
                      L  GcG+G  +++ l ++  +s+t++Dlsp       +  +a+++ +    ++e+                        +l++++ +l+hvp  
       KOO22913.1 600 LIAGCGSGhQVAQALlSYDHVSITAIDLSPL------TLAFAHHKLH--ARWPEE-TarrvrfcvadvlalttarlpPVELVCCIGMLHHVPrv 684
                      558*****7799999555566********97......5667777777..333333.2468999999999999999*****************99 PP

  Methyltransf_23  97 dppellrqiatllkpgGylllsep 120
                      d+p++l ++a  l +gG+l l ++
       KOO22913.1 685 DVPRALEKLAGALLEGGVLQLGTY 708
                      9*****************988877 PP

  == domain 2  score: 0.5 bits;  conditional E-value: 0.21
  Methyltransf_23 144 sffsarslkelleeaGlevv 163
                      + f+  +l +lle+aGle+v
       KOO22913.1 819 CSFTMLELQTLLEGAGLELV 838
                      788999************98 PP

>> TPMT  Thiopurine S-methyltransferase (TPMT)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.0   2.4e-05     0.054      25     117 ..     582     669 ..     569     703 .. 0.70

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 2.4e-05
                 HHHHH.HHT.T-S--EEEEEET-TT-HHHH..HH-BTTEEEEEE-S-HHHHHHHHHHHTTSGGGGGEEEE--...........-TTT---SS-..E CS
        TPMT  25 llkkf.ldalkakaglrvlvPlCGkaldlv..wlAeqgrevvGvelselAvekffeeanlepkvkelsgvkeysageiellcgdvFtlraeelgkf 117
                 ++++f +++ +   + ++l+ +CG+++ ++   l+  + ++ +++ls+l ++   + ++l+ +  e +++++          +dv +l+ ++l ++
  KOO22913.1 582 QFRHFrWPHGEDAHQHSMLIAGCGSGHQVAqaLLSYDHVSITAIDLSPLTLAF--AHHKLHARWPEETARRV------RFCVADVLALTTARLPPV 669
                 55555466666677789***********96325899999*********99975..66666444333333333......445556666665555555 PP

>> CMAS  Mycolic acid cyclopropane synthetase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   2.2e-05     0.049      66     166 ..     599     707 ..     594     713 .. 0.90

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 2.2e-05
                 EEEES-TTSHHHHHHHHHH-.-EEEEEES-HHHHHHHHHHHHT...S-SSS-EEEEES-GGG---....--SEEEEES-GGGTSGGGHHHHHHHHHHHS CS
        CMAS  66 lLdiGcGWGslvrraveryd.vkvvglTlSkeqaklakkrvde...ldlerkvevklldyedlde....kvdrvvsvgafehvgkenydtffkklkkll 156
                 +L  GcG G+ v +a   yd v++ ++ lS    + a++++++   ++++r+v+  ++d   l      +v+ v  +g++ hv     ++  +kl  +l
  KOO22913.1 599 MLIAGCGSGHQVAQALLSYDhVSITAIDLSPLTLAFAHHKLHArwpEETARRVRFCVADVLALTTarlpPVELVCCIGMLHHVPRVDVPRALEKLAGAL 697
                 6778***************879999*********999999987344589999999999999999899999***************************** PP

                 -TT-EEEEEE CS
        CMAS 157 kedGllllht 166
                  e+G+l l t
  KOO22913.1 698 LEGGVLQLGT 707
                 *****98866 PP

>> Hamartin  Hamartin protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.7     3e-05     0.068     327     464 ..     241     383 ..     220     397 .. 0.71

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 3e-05
    Hamartin 327 slWSPssvcgmttppssp.givptte.lelsssasllsskvsstpeaagkatpe..tTPakssrklppslsesavvvalpassrksspprkdeksessk 421
                   W Ps v + ++pps + + +p ++ +    +a++  +++ + p++a  a  +    Pa s +  ++ l e +v++al   sr   +++  + +++s+
  KOO22913.1 241 ARWLPSQVPTAALPPSARvPPSPPSPlTLTPATALHAPATALQAPATALHAPATalQAPAYSEPPYENVLAEPFVQAALAG-SRAFGAHDGAGCEDESQ 338
                 46**************997666767744455667888899999999987765444589****9999999999999966555.55677777777666666 PP

    Hamartin 422 pdlskqeevenekeleeslkskssvtlse...Lsdvikelleaese 464
                   +++++ + ne +++ + +s+++v+ s+   ++dv++++l ++ +
  KOO22913.1 339 MAVNESQMAVNESQMAVN-ESQMAVNESQmavMTDVMGDDLGESDD 383
                 666666666455444444.467777777767788888888444433 PP

>> CheR  CheR methyltransferase, SAM binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.0   0.0      0.22     5e+02      32      81 ..     596     636 ..     586     642 .. 0.70
   2 ?   10.0   0.0   0.00019      0.43     112     177 ..     643     709 ..     615     716 .. 0.86

  Alignments for each domain:
  == domain 1  score: 0.0 bits;  conditional E-value: 0.22
                 SEEEEEES-TTTHHHHHHHHHHHCHSTTTSSS-EEEEEEESSCHHHHHHH CS
        CheR  32 rvriwsagcssGeEpYslAmllketlpkaaklkvkilAtDidlkvlekAk 81 
                 + +++ agc+sG+    +A +l +  ++    +v+i+A+D++   l+ A+
  KOO22913.1 596 QHSMLIAGCGSGHQ---VAQALLS--YD----HVSITAIDLSPLTLAFAH 636
                 55677788888875...4555555..22....357999999988887765 PP

  == domain 2  score: 10.0 bits;  conditional E-value: 0.00019
                 E-HHHHTTEEEEE--TTT.-SGGG--EEEEEE-SSGGGC-CHHHHHHHHHHHCCEEEEEEEEE-TTB CS
        CheR 112 vkkeikelvkFeklnlle.kksvlgklDvifcrnvliYfdeetqekvlerfaeklkpgglLllGhsE 177
                   +e  ++v+F   ++l+ + + l +++++ c  +l    + +  + le++a +l +gg+L lG   
  KOO22913.1 643 WPEETARRVRFCVADVLAlTTARLPPVELVCCIGMLHHVPRVDVPRALEKLAGALLEGGVLQLGTYS 709
                 5678899*********************************************************755 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (920 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       495  (0.0276089); expected 358.6 (0.02)
Passed bias filter:                      323  (0.0180155); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.70u 0.28s 00:00:00.98 Elapsed: 00:00:00.45
# Mc/sec: 6143.24
//
Query:       KOO22914.1  [L=219]
Description: hypothetical protein Ctob_006294 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (219 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       243  (0.0135535); expected 358.6 (0.02)
Passed bias filter:                      212  (0.0118244); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.39u 0.26s 00:00:00.65 Elapsed: 00:00:00.41
# Mc/sec: 1617.59
//
Query:       KOO22915.1  [L=488]
Description: protein kinase brain isozyme, partial [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.7e-45  155.4   0.0    4.2e-44  150.9   0.0    2.0  2  Pkinase      Protein kinase domain
    1.8e-22   79.9   0.0    3.8e-22   78.8   0.0    1.5  2  Pkinase_Tyr  Protein tyrosine kinase
  ------ inclusion threshold ------
      0.043   13.7   5.0        0.1   12.5   0.3    2.7  3  APH          Phosphotransferase enzyme family


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  150.9   0.0     7e-48   4.2e-44       6     264 .]      49     350 ..      44     350 .. 0.88
   2 ?    2.2   0.4     0.016        97       5      51 ..     394     439 ..     391     460 .. 0.77

  Alignments for each domain:
  == domain 1  score: 150.9 bits;  conditional E-value: 7e-48
                 EEEEESSEEEEEEEETTTTEEEEEEEEECHCHCHHHH.HHHHHHHHHHHHHS...CTTB--EEEEEEESSEEEEEEE--TTEBHHHHHH........HH CS
     Pkinase   6 klGeGsfGkVykaveketgkivAvKkikkekakkkke.kkvlrEikilkklk...hpnivrlyevfeekdelylvleyveggeladlle........rk 92 
                  lG+G+fG+V  ++ + +g+ +A+K+++ ++   +k   ++++E ++l +l+   h ++     +f++ ++l++v+e+++gg+la+ll           
  KOO22915.1  49 MLGKGAFGRVALMRWRGDGRPYAMKTVRLDSLATDKMaIELVTERRVLTELSeapHARLAYARCCFRSAKHLHFVMEFLQGGSLARLLDeaiqhqtqPG 147
                 69**************************998766665599************9999***************************9999997776766333 PP

                 SS--HHHHHHHHHHHHHHHHHHHHTTEE-SS-SGGGEEEETTTEEEE-SGTTSEESSSSCS...BCTTTSCGGGS-HHHHTTSCBSHHHHHHHHHHHHH CS
     Pkinase  93 gslseeeakkiakqilegleylHskgiiHrDlKpeNiLidekgelKitDFGlakelesssk...ltsfvgtseYlAPEvlkeneyskkvDvWslGvily 188
                  +l+e  ++ +a+q++ +l  lHs+g+++ DlK eN++++ +g+ K++DFG+++      +   ++   gt+ YlAPE + + ++s+++D+W+lGv++y
  KOO22915.1 148 LALPEPIVRYYAAQLVLALGALHSRGMLYLDLKLENVILNARGDAKLVDFGFVRCDVDVGRlqaVKRAGGTRCYLAPEAILGLPVSAPCDWWALGVLVY 246
                 458888***********************************************965555545669999******************************* PP

                 HHHHSS-STTTSSHHHHHHHHHHTHHHHHHHCT..SHH...HHHTTS.........................-HHHHHHHHHHT-SSGCCSTT...HHH CS
     Pkinase 189 elltgkppfsgekgkekvekeldqlekilkilg..etkeklpeasei.........................seeakdllkkllkkdpkkRlt...aee 257
                 ell g  pf+g+++k   +++++   ++ +  +  +++e+lp                              +++  d+++kll+k+ + Rl+   a+e
  KOO22915.1 247 ELLVGYGPFRGDNDKALGAAICNSRLRFPRHCKedDEDEDLPAG--ApaaaspfaspsfgpprpssassvtsNSSDGDFVRKLLTKKAEARLGtrgADE 343
                 ****************9999999977777777633333333333..266999*******************978888***************9888999 PP

                 HHTSGGG CS
     Pkinase 258 llqhpyl 264
                 + +hp+l
  KOO22915.1 344 CRAHPFL 350
                 9999996 PP

  == domain 2  score: 2.2 bits;  conditional E-value: 0.016
                 EEEEEESSEEEEEEEETTTTEEEEEEEEECHCHCHHHHHHHHHHHHH CS
     Pkinase   5 eklGeGsfGkVykaveketgkivAvKkikkekakkkkekkvlrEiki 51 
                 +++G G  + V+ a  ++ +   A K   ke+++k   +++ +E k 
  KOO22915.1 394 SEVGAGVESDVVVAQAEAAQAAAARKAELKEQERKLA-EHAEAEAKA 439
                 789**********997666666666666666665555.588888765 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   78.8   0.0   6.3e-26   3.8e-22       5     232 ..      48     280 ..      44     284 .. 0.84
   2 ?   -3.2   0.4       0.7   4.2e+03       6      43 ..     395     432 ..     392     445 .. 0.69

  Alignments for each domain:
  == domain 1  score: 78.8 bits;  conditional E-value: 6.3e-26
                  EEEEEESSEEEEEEEEETTTTSSEEEEEEEEE..STTSSHHHHHHHHHHHHHHHTS.-BTTB--EEEEEE..SSSSEEEEEE--TTEBHHHHHHHT.. CS
  Pkinase_Tyr   5 kklGeGafGkVvegtlkgekekkevkVavKtl..keeateeekeelleeakimkkl.khpnivkllgvct..keepllivteyvkgGdLlkfLrkk.. 95 
                    lG+GafG+V   +++     +    a+Kt+  ++ at++   el++e +++++l + p+    ++ c   ++++l +v+e+++gG+L   L +   
   KOO22915.1  48 CMLGKGAFGRVALMRWR----GDGRPYAMKTVrlDSLATDKMAIELVTERRVLTELsEAPHARLAYARCCfrSAKHLHFVMEFLQGGSLARLLDEAiq 141
                  579**************....666777888773245567777889***********88888766666666568888**************99999877 PP

                  ..CTTTSBHHH..HHHHHHHHHHHHHHHHHTTEEEST-SGGGEEEEETTEEEE-STTTHEETTTSSEEEETTSSTSGGGGS-HHHHHHSEEEHHHHHH CS
  Pkinase_Tyr  96 ..ekekltlkd..llsfalqvAkGmeyLeskklvHrdlaarNvLlsenkvvkisDfGLardiekddeyvkkeeaklpvkWmapEslkekkftsksDvW 189
                    +++ l l +  +  +a+q+  ++  L+s+ ++  dl   Nv+l+ +  +k+ DfG  r   +  + ++ ++a     ++apE++    ++   D W
   KOO22915.1 142 hqTQPGLALPEpiVRYYAAQLVLALGALHSRGMLYLDLKLENVILNARGDAKLVDFGFVRCDVDVGRLQAVKRAGGTRCYLAPEAILGLPVSAPCDWW 239
                  664444444442166899******************************************998999999999999999******************** PP

                  HHHHHHHHHHTTSSGTTTTSHHHHHHHHHHTTEES-BBTTSBH CS
  Pkinase_Tyr 190 sfGvllwEiftlgespypglkneevleklkegkrlekpekcpe 232
                  + Gvl++E++  g  p++g +++ + +++  + rl+ p++c+e
   KOO22915.1 240 ALGVLVYELLV-GYGPFRGDNDKALGAAI-CNSRLRFPRHCKE 280
                  **********9.*****997666655555.5679999999986 PP

  == domain 2  score: -3.2 bits;  conditional E-value: 0.7
                  EEEEESSEEEEEEEEETTTTSSEEEEEEEEESTTSSHH CS
  Pkinase_Tyr   6 klGeGafGkVvegtlkgekekkevkVavKtlkeeatee 43 
                  ++G+G  ++Vv ++++  +  +  k  +K  +++  e+
   KOO22915.1 395 EVGAGVESDVVVAQAEAAQAAAARKAELKEQERKLAEH 432
                  78999999999999998777777777777765544443 PP

>> APH  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.6   0.1    0.0091        54      21     107 ..      68     171 ..      56     175 .. 0.64
   2 ?   12.5   0.3   1.8e-05       0.1     125     209 ..     132     210 ..      94     223 .. 0.69
   3 ?    2.2   0.5     0.023   1.4e+02      16     161 ..     407     446 ..     345     480 .. 0.68

  Alignments for each domain:
  == domain 1  score: 3.6 bits;  conditional E-value: 0.0091
                 --EEEEEE-TT.....S-HHHHHHHHHHHHHHHHTT-B--B-CTTBS-EEETTEEEEEEE----EE-SS..............HHHHHHHHHHHHHHHH CS
         APH  21 gryvlrrnppa.....raaeeirrevallrlLakagvpvPevlagdtddeeigllfalieyvpgrsllr..............klsaaqlpellealge 100
                 ++y+++ ++       + a e+  e ++l+ L++a+  +  ++a +     + +l +++e++ g sl+r              +l +++ + ++++l+ 
  KOO22915.1  68 RPYAMKTVRLDslatdKMAIELVTERRVLTELSEAPH-ARLAYA-RCCFRSAKHLHFVMEFLQGGSLARlldeaiqhqtqpglALPEPIVRYYAAQLVL 164
                 5777665555532233444455578888888888844.322222.222233333667888888888888777887777777777777788888888888 PP

                 HHCCHHC CS
         APH 101 flaalhq 107
                 +l+alh+
  KOO22915.1 165 ALGALHS 171
                 8888886 PP

  == domain 2  score: 12.5 bits;  conditional E-value: 1.8e-05
                 HHHHHHCHHHCCCGCCTCCHHHHHHHHHHHHHHHH--S.SS-EEEE-SS-SGGGEEEC..TTEEEEE---TT-EEEECCHHHHCCH CS
         APH 125 llrqlesatarllaselldlleeleeqvlaalaallpg.elptvllHgDlhpgNllvdpddgrvtGviDfedaglgpplyDlavll 209
                 l+r+l++a +++ ++ l    e + +  +aa + l++g   +++ l  Dl++ N++++++++    ++Df++++     +D++ l 
  KOO22915.1 132 LARLLDEAIQHQTQPGLAL-PEPIVR-YYAAQLVLALGaLHSRGMLYLDLKLENVILNARGDAK--LVDFGFVRCD---VDVGRLQ 210
                 3455555555555555555.555555.455444444446899****************888887..9******999...8888877 PP

  == domain 3  score: 2.2 bits;  conditional E-value: 0.023
                 EEETT--EEEEEE-TTS-HHHHHHHHHHHHHHHHTT-B--B-CTTBS-EEETTEEEEEEE----EE-SSHHHHHHHHHHHHHHHHHHCCHHCH.-STTT CS
         APH  16 vttpagryvlrrnpparaaeeirrevallrlLakagvpvPevlagdtddeeigllfalieyvpgrsllrklsaaqlpellealgeflaalhqvdpaalp 114
                  + +a                                                                                              
  KOO22915.1 407 AQAEA---------------------------------------------------------------------------------------------- 411
                 33333.............................................................................................. PP

                 B-SHHCHTCCHHHHHHCHHHCCCGCCTCC....HHHHHHHHHHHHHHHH-- CS
         APH 115 ladflaqdlellrqlesatarllaselld....lleeleeqvlaalaallp 161
                                 +++a+ +++el++    l+e +e+++ aalaa ++
  KOO22915.1 412 ----------------AQAAAARKAELKEqerkLAEHAEAEAKAALAAKAA 446
                 ................22223333333333333444444444444444333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (488 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1529  (0.0852808); expected 358.6 (0.02)
Passed bias filter:                      570  (0.0317921); expected 358.6 (0.02)
Passed Vit filter:                        75  (0.00418317); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.64u 0.26s 00:00:00.90 Elapsed: 00:00:00.42
# Mc/sec: 3519.60
//
Query:       KOO22916.1  [L=509]
Description: hypothetical protein Ctob_006296 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (509 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       684  (0.0381505); expected 358.6 (0.02)
Passed bias filter:                      432  (0.024095); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.52u 0.24s 00:00:00.76 Elapsed: 00:00:00.39
# Mc/sec: 3912.14
//
Query:       KOO22917.1  [L=395]
Description: hypothetical protein Ctob_002581 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    6.2e-09   36.1   0.0    1.2e-08   35.2   0.0    1.4  1  fn3              Fibronectin type III domain
    8.1e-05   22.4   0.0      0.064   13.4   0.0    3.1  3  TPR_2            Tetratricopeptide repeat
     0.0034   17.9   0.1     0.0068   17.0   0.1    1.5  1  Pur_ac_phosph_N  Purple acid Phosphatase, N-terminal domain
     0.0053   16.5   0.0        4.1    7.4   0.0    3.3  3  TPR_1            Tetratricopeptide repeat
  ------ inclusion threshold ------
      0.046   14.1   0.0        5.4    7.6   0.0    3.4  3  TPR_17           Tetratricopeptide repeat
      0.051   13.9   0.3        0.3   11.4   0.1    2.2  2  TPR_20           Tetratricopeptide repeat
      0.051   14.2   0.0       0.16   12.7   0.0    1.9  1  TPR_16           Tetratricopeptide repeat
      0.054   13.2   0.1        4.2    7.2   0.0    2.9  3  TPR_11           TPR repeat
      0.088   13.0   0.0       0.16   12.2   0.0    1.4  1  p25-alpha        p25-alpha
        0.1   12.9   0.0       0.23   11.8   0.0    1.6  1  Interfer-bind    Interferon-alpha/beta receptor, fibronectin 


Domain annotation for each model (and alignments):
>> fn3  Fibronectin type III domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.2   0.0   6.5e-12   1.2e-08       3      85 .]     134     221 ..     133     221 .. 0.87

  Alignments for each domain:
  == domain 1  score: 35.2 bits;  conditional E-value: 6.5e-12
                 ECEEEEEEESSSEEEEEEE-CS.SSSSTEEEEEEEEEETTSTS..TEEEEEECST..SSEEEEESSSTTEEEEEEEEEEETSEEEEEE CS
         fn3   3 PsnlsvsevtstsltvsWeppk.dgggpitgYeveyrekgsee..ewneftvprt..ttsvtltgLkpgteYevrVqavngggegpes 85 
                 P   +v + ++++++v We  + dgg++  +Ye++y +++     +++++t+ r   +  v l +L  +teY +rVqa n++ge+ +s
  KOO22917.1 134 PAPAKVQAESHSTIRVAWEVVNdDGGDECFQYELQYTPVDPITadVSHWRTAYRGirKFGVLLADLLSDTEYCFRVQASNTVGESLWS 221
                 6666778888*****************************99999966666666553266***********************999887 PP

>> TPR_2  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.0       4.7   8.4e+03      27      34 .]       6      13 ..       5      13 .. 0.88
   2 ?    5.6   0.0     0.011        20       3      32 ..      16      45 ..      15      47 .. 0.92
   3 !   13.4   0.0   3.6e-05     0.064       1      34 []      48      81 ..      48      81 .. 0.90

  Alignments for each domain:
  == domain 1  score: -2.6 bits;  conditional E-value: 4.7
       TPR_2 27 AleldPnn 34
                Ale+ P++
  KOO22917.1  6 ALEIQPDD 13
                9*****96 PP

  == domain 2  score: 5.6 bits;  conditional E-value: 0.011
       TPR_2  3 alynlGlayyklgdyeeAleafekAleldP 32
                +l+++  a +++ +  + +++ +++le +P
  KOO22917.1 16 LLCERSVARLRQRKITDSIADAQRVLEVNP 45
                57889999*********************9 PP

  == domain 3  score: 13.4 bits;  conditional E-value: 3.6e-05
       TPR_2  1 aealynlGlayyklgdyeeAleafekAleldPnn 34
                a+++ + +l  +++++y eA+e + ++le dP++
  KOO22917.1 48 AKGYSQVALGKMYQQQYSEAAEQLVQSLECDPTH 81
                567788888889********************97 PP

>> Pur_ac_phosph_N  Purple acid Phosphatase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.0   0.1   3.8e-06    0.0068       9      90 ..     140     224 ..     136     228 .. 0.77

  Alignments for each domain:
  == domain 1  score: 17.0 bits;  conditional E-value: 3.8e-06
  Pur_ac_phosph_N   9 tedtstsmtvsWit.pektkksvvrygtssdalestaeatsstyettnyksgyshkatltgLepgttYyYrvgddeg....gwSevy 90 
                      +++++++++v W   +++ +++  +y+ + + ++   +a+ s    t y++   + ++l +L  +t+Y++rv + ++     wS   
       KOO22917.1 140 QAESHSTIRVAWEVvNDDGGDECFQYELQYTPVDP-ITADVSHWR-TAYRGIRKFGVLLADLLSDTEYCFRVQASNTvgesLWSGYS 224
                      5668999*****97466779999999999988644.344444443.6899**********************999877667777655 PP

>> TPR_1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.0      0.87   1.6e+03      27      34 .]       6      13 ..       5      13 .. 0.89
   2 ?    4.9   0.0     0.014        24      12      32 ..      25      45 ..      22      47 .. 0.88
   3 !    7.4   0.0    0.0023       4.1       3      34 .]      50      81 ..      48      81 .. 0.83

  Alignments for each domain:
  == domain 1  score: -0.8 bits;  conditional E-value: 0.87
                HHHHSTTH CS
       TPR_1 27 ALelnPnn 34
                ALe++P++
  KOO22917.1  6 ALEIQPDD 13
                9*****96 PP

  == domain 2  score: 4.9 bits;  conditional E-value: 0.014
                HHTT-HHHHHHHHHHHHHHST CS
       TPR_1 12 fklgkydeAleyyekALelnP 32
                +++ k  + +++ +++Le+nP
  KOO22917.1 25 LRQRKITDSIADAQRVLEVNP 45
                678899999***********9 PP

  == domain 3  score: 7.4 bits;  conditional E-value: 0.0023
                HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH CS
       TPR_1  3 alynlGnayfklgkydeAleyyekALelnPnn 34
                 + + ++  +++++y eA e   + Le +P++
  KOO22917.1 50 GYSQVALGKMYQQQYSEAAEQLVQSLECDPTH 81
                56666666689*******************86 PP

>> TPR_17  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.5   0.0      0.58     1e+03       5      25 ..       6      26 ..       4      34 .. 0.81
   2 ?    0.8   0.0      0.47   8.4e+02       3      16 ..      38      51 ..      36      56 .. 0.85
   3 ?    7.6   0.0     0.003       5.4       4      26 ..      73      95 ..      72     100 .. 0.87

  Alignments for each domain:
  == domain 1  score: 0.5 bits;  conditional E-value: 0.58
      TPR_17  5 aleldPnnadaynnLAelllk 25
                ale+ P++  +++++ ++ l+
  KOO22917.1  6 ALEIQPDDEQLLCERSVARLR 26
                9*******9999988877665 PP

  == domain 2  score: 0.8 bits;  conditional E-value: 0.47
      TPR_17  3 lkaleldPnnaday 16
                +++le +P +a+ y
  KOO22917.1 38 QRVLEVNPFSAKGY 51
                89*******99877 PP

  == domain 3  score: 7.6 bits;  conditional E-value: 0.003
      TPR_17  4 kaleldPnnadaynnLAelllkn 26
                ++le+dP++ ++  +L+e+l+ +
  KOO22917.1 73 QSLECDPTHEPSAELLGEVLSTI 95
                68****************99865 PP

>> TPR_20  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.2   0.0      0.13   2.3e+02      14      49 ..       6      41 ..       3      51 .. 0.85
   2 ?   11.4   0.1   0.00017       0.3       5      53 ..      31      79 ..      27      85 .. 0.88

  Alignments for each domain:
  == domain 1  score: 2.2 bits;  conditional E-value: 0.13
      TPR_20 14 alaanpddldarldlAlallaagryeeAleqLleil 49
                al+ +pdd ++ ++ + a l + +  ++++   ++l
  KOO22917.1  6 ALEIQPDDEQLLCERSVARLRQRKITDSIADAQRVL 41
                78899******************9999987665555 PP

  == domain 2  score: 11.4 bits;  conditional E-value: 0.00017
      TPR_20  5 apelaeleaalaanpddldarldlAlallaagryeeAleqLleilkrdr 53
                + ++a+ ++ l+ np   +   ++Al  + +++y eA+eqL++ l+ d 
  KOO22917.1 31 TDSIADAQRVLEVNPFSAKGYSQVALGKMYQQQYSEAAEQLVQSLECDP 79
                67899999999999999999**********************9998765 PP

>> TPR_16  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   8.8e-05      0.16       6      66 ..      23      80 ..      18      82 .. 0.80

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 8.8e-05
      TPR_16  6 aalragdyddAaaaleaalkrdpssPdaaeAllllgdaalrq...grlaeAa.alyraalraapd 66
                a+lr+++ +d +a ++++l+ +   P+   ++ ++ ++al +   + + eAa +l++++ +++p 
  KOO22917.1 23 ARLRQRKITDSIADAQRVLEVN---PF---SAKGYSQVALGKmyqQQYSEAAeQLVQSL-ECDPT 80
                689*******************...99...66666666666666689*****6777665.88886 PP

>> TPR_11  TPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.6   0.0     0.061   1.1e+02      19      37 ..       5      23 ..       4      27 .. 0.81
   2 ?   -2.6   0.0       2.5   4.5e+03      12      32 ..      32      52 ..      29      56 .. 0.74
   3 ?    7.2   0.0    0.0023       4.2       6      26 ..      60      80 ..      58      92 .. 0.91

  Alignments for each domain:
  == domain 1  score: 2.6 bits;  conditional E-value: 0.061
      TPR_11 19 kAlkldPdnaeayynLGla 37
                +Al++ Pd+  +++++ +a
  KOO22917.1  5 TALEIQPDDEQLLCERSVA 23
                69*******9999887665 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 2.5
      TPR_11 12 eAieaYkkAlkldPdnaeayy 32
                ++i++ ++ l+ +P +a  y+
  KOO22917.1 32 DSIADAQRVLEVNPFSAKGYS 52
                566666899999998888776 PP

  == domain 3  score: 7.2 bits;  conditional E-value: 0.0023
      TPR_11  6 eqGkyeeAieaYkkAlkldPd 26
                 q++y eA e++ + l+ dP+
  KOO22917.1 60 YQQQYSEAAEQLVQSLECDPT 80
                699****************97 PP

>> p25-alpha  p25-alpha
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   8.7e-05      0.16       2      50 ..     294     342 ..     293     354 .. 0.89

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 8.7e-05
   p25-alpha   2 eaFkaFakfgdtkktgkemdnknfsKlckDckiidkkvtstdvDiiFsK 50 
                 + F+ ++  g   ++  ++   +f K+++D k+ +k++ + d+D+iF +
  KOO22917.1 294 QCFRVYTLAGAIDDEPVNVSMLQFRKCLTDLKLTGKEYPQSDMDMIFLR 342
                 6789999999888889999999*************************76 PP

>> Interfer-bind  Interferon-alpha/beta receptor, fibronectin type III
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   0.00013      0.23      67      86 ..     194     213 ..     164     224 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 0.00013
                    EEEES--TT-EEEEEEEEEE CS
  Interfer-bind  67 vvledLepettYCvsVqaes 86 
                    v l dL  +t+YC++Vqa++
     KOO22917.1 194 VLLADLLSDTEYCFRVQASN 213
                    5789**************54 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (395 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       503  (0.0280551); expected 358.6 (0.02)
Passed bias filter:                      461  (0.0257125); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.49u 0.26s 00:00:00.75 Elapsed: 00:00:00.42
# Mc/sec: 2825.06
//
Query:       KOO22918.1  [L=320]
Description: hypothetical protein Ctob_002580 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (320 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       571  (0.0318478); expected 358.6 (0.02)
Passed bias filter:                      509  (0.0283898); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.44u 0.23s 00:00:00.67 Elapsed: 00:00:00.36
# Mc/sec: 2648.45
//
Query:       KOO22919.1  [L=152]
Description: pyruvate kinase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    8.1e-25   87.3   0.1    1.1e-24   87.0   0.1    1.1  1  PK_C         Pyruvate kinase, alpha/beta domain
  ------ inclusion threshold ------
       0.02   14.5   0.1        4.3    7.0   0.1    2.2  2  DNase-RNase  Bifunctional nuclease


Domain annotation for each model (and alignments):
>> PK_C  Pyruvate kinase, alpha/beta domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   87.0   0.1   1.2e-28   1.1e-24       1     113 [.      33     146 ..      33     149 .. 0.92

  Alignments for each domain:
  == domain 1  score: 87.0 bits;  conditional E-value: 1.2e-28
                 HHHHHHHHHHHHHHT-SEEEEE-SSSHHHHHHHHT-TSSEEEEEESHHHHHHHHHHCTTEEHHH.HHHHH...TTS.HHHHHHHHHHHTTSS-STSEEE CS
        PK_C   1 eaiakaaveaaeelgakaIvvltesGetArliskyrpkvpiiavtpneltarqlalyrGvypvlvekaktaestde.llreavkvakeaglvkkgdevv 98 
                 +++aka+veaa   ga +Iv+lt  G++Arlisk+rp++pi+++ +++++  +++l+rG++p+ v++    +  ++ ++++a+ +ak+a+l+k+gd++v
  KOO22919.1  33 DSVAKAVVEAATCSGAVLIVTLTVGGTSARLISKHRPRCPILVLASDPNVGAACNLHRGCIPFAVPEGVPIHGHEDeRFAAAITIAKQAKLAKSGDKIV 131
                 68**************************************************************99877755555449********************* PP

                 EEE-SSSS..SS--E CS
        PK_C  99 vtaGtpkgesgttNt 113
                 + +G++ g+ + +N+
  KOO22919.1 132 LAHGVRHGVLSLSNF 146
                 ******998777775 PP

>> DNase-RNase  Bifunctional nuclease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.0   0.1   0.00048       4.3      75     109 ..       7      40 ..       3      52 .. 0.85
   2 ?    5.5   0.0    0.0014        13      70     108 ..     100     134 ..      96     143 .. 0.80

  Alignments for each domain:
  == domain 1  score: 7.0 bits;  conditional E-value: 0.00048
                  EEETTEEEEEEEEEET---EEEEE-HHHHHHHHHH CS
  DNase-RNase  75 dledgtfyAelvlrkeeeeleidaRpSDaiaLAlr 109
                  + e  +fy+++v +  e+ + +   pSD++a A+ 
   KOO22919.1   7 EAEAAIFYSSIVSDM-EAVMPLPLEPSDSVAKAVV 40 
                  67889*********9.5559***********9985 PP

  == domain 2  score: 5.5 bits;  conditional E-value: 0.0014
                  EEEEEEEETTEEEEEEEEEET---EEEEE-HHHHHHHHH CS
  DNase-RNase  70 rvvItdledgtfyAelvlrkeeeeleidaRpSDaiaLAl 108
                   v I+ +ed+ f A ++++k+   ++  a+  D i+LA 
   KOO22919.1 100 GVPIHGHEDERFAAAITIAKQ---AK-LAKSGDKIVLAH 134
                  688****************94...33.477788888875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (152 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       376  (0.0209716); expected 358.6 (0.02)
Passed bias filter:                      304  (0.0169558); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.39u 0.23s 00:00:00.62 Elapsed: 00:00:00.40
# Mc/sec: 1140.02
//
Query:       KOO22920.1  [L=467]
Description: aminoglycoside phosphotransferase domain-containing protein 1-like protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.3e-17   64.6   4.1    1.3e-17   64.6   4.1    1.8  2  APH       Phosphotransferase enzyme family


Domain annotation for each model (and alignments):
>> APH  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.6   4.1     7e-22   1.3e-17      53     211 ..     127     279 ..      45     305 .. 0.71
   2 ?   -2.1   0.2      0.16   2.9e+03     104     116 ..     376     388 ..     354     454 .. 0.55

  Alignments for each domain:
  == domain 1  score: 64.6 bits;  conditional E-value: 7e-22
                 B--B-CTTBS-EEETTEEEEEEE----EE-SSHHHHHHHHHHHHHHHHHHCCHHCH.-STTTB-SHHCHTCCHHHHHHCHHHCCCGCCTCCHHHHHHHH CS
         APH  53 pvPevlagdtddeeigllfalieyvpgrsllrklsaaqlpellealgeflaalhqvdpaalpladflaqdlellrqlesatarllaselldlleeleeq 151
                 ++ ++la   ++ e+++ ++l+++ p   +++    + +  ll++lg + a+l++  ++++++a  +++ +++l+  ++ ++ l+++  +  + +l + 
  KOO22920.1 127 RATAPLA---SGIEREHAVRLLPFRPSGLFAD---VPLTLTLLRNLGTATARLSASLADFDHPAAHREH-VWDLAHAPNVRPLLVHAPAE--RHALLAG 216
                 3344445...555555599*************...9999999999999999999998888888877777.55555555554433333333..4556666 PP

                 HHHHHHHH--S...SS-EEEE-SS-SGGGEEEC..TTEEEEE---TT-EEEECCHHHHCCHHH CS
         APH 152 vlaalaallpg...elptvllHgDlhpgNllvdpddgrvtGviDfedaglgpplyDlavllrs 211
                 vl++++  +++   +l++  +HgD + +N+lvd+++++v G+iDf+d+++++ + ++a++ ++
  KOO22920.1 217 VLDEFESSVRPlapQLRMAAIHGDVNDQNVLVDAGGTQVLGIIDFGDMTYSWLVNEIAIATAY 279
                 666666666666668******************************************998744 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 0.16
                 CHHCH.-STTTB- CS
         APH 104 alhqvdpaalpla 116
                 +l +v++++l  +
  KOO22920.1 376 RLRAVPAPELAAQ 388
                 3333332211111 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (467 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       329  (0.0183502); expected 358.6 (0.02)
Passed bias filter:                      262  (0.0146132); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.25s 00:00:00.72 Elapsed: 00:00:00.40
# Mc/sec: 3482.81
//
Query:       KOO22921.1  [L=477]
Description: serine threonine kinase, partial [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
      5e-32  111.3   0.0    7.6e-32  110.7   0.0    1.2  1  Pkinase         Protein kinase domain
    2.3e-16   59.9   0.0    4.3e-16   59.0   0.0    1.4  1  Pkinase_Tyr     Protein tyrosine kinase
     0.0016   17.8   0.1     0.0028   17.0   0.1    1.3  1  Kdo             Lipopolysaccharide kinase (Kdo/WaaP) family
     0.0059   16.7   0.0      0.012   15.7   0.0    1.4  1  DnaJ            DnaJ domain
  ------ inclusion threshold ------
      0.024   14.0   0.0      0.035   13.4   0.0    1.1  1  Kinase-like     Kinase-like
        1.8    9.5   6.8    1.5e+02    3.3   6.8    2.3  1  Nucleoporin_FG  Nucleoporin FG repeat region


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  110.7   0.0   2.5e-35   7.6e-32      45     263 ..     216     468 ..     200     469 .. 0.81

  Alignments for each domain:
  == domain 1  score: 110.7 bits;  conditional E-value: 2.5e-35
                 HHHHHHHHHHHS...CTTB--EEEEEEESSEEEEEEE--TTEBHHHHHH....HHSS--HHHHHHHHHHHHHHHHHHHHTTEE-SS-SGGGEEEE.TTT CS
     Pkinase  45 vlrEikilkklk...hpnivrlyevfeekdelylvleyveggeladlle....rkgslseeeakkiakqilegleylHskgiiHrDlKpeNiLid.ekg 135
                  +rE + l++++   hpn+v++++  + +   +l +e+++ggel d +     + + ++  +a+ +++qi++g+++lH+ gi H D+K eN +++ + +
  KOO22921.1 216 PRREAAALERIQahpHPNVVKFFGHETVPGGSLLSFECISGGELYDNVIealsQGTPVPTVRARTLFHQIARGVDHLHKLGIGHLDIKLENCMLHaDMQ 314
                 579999***999999****************************665443377466679*************************************5555 PP

                 EEEE-SGTTSEESSSSCS.BCTTTSCGGGS-HHHH........TTSCB.SHHHHHHHHHHHHHHHHHSS-STTTSSHHHHHHHHHHTHHHHHHHCT... CS
     Pkinase 136 elKitDFGlakelesssk.ltsfvgtseYlAPEvl........keney.skkvDvWslGvilyelltgkppfsgekgkekvekeldqlekilkilg... 221
                  + ++D+Gl   l+ +    + + g++ Y++PEv          + +y   ++DvWslGv l+ +l+g  p+ ++ + + +++  +q++  l +l+   
  KOO22921.1 315 TVSVVDLGLWHDLQLGLVnQDLYRGSPAYMSPEVFvnkgrrepPTMPYdAVPADVWSLGVCLFVMLMGFYPLDEHPTISGYQHLQEQHTLGLGTLEatc 413
                 5*************9876477799**********999876444337787889*********************76666655555555332222232333 PP

                 .SHH...HHHTTS...................-HHHHHHHHHHT-SSGCCSTTHHHHHTSGG CS
     Pkinase 222 .etkeklpeasei...................seeakdllkkllkkdpkkRltaeellqhpy 263
                  +++                             +ea dll+ +l+ +p +Rl+ +++l +++
  KOO22921.1 414 gPVSI-------QvfplrrmygpmrrhqllssAPEAADLLDGMLEAEPAERLSLQQILTSEF 468
                 32222.......13555666899999999*999*************************9987 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.0   0.0   1.4e-19   4.3e-16      33     222 ..     204     402 ..     174     408 .. 0.83

  Alignments for each domain:
  == domain 1  score: 59.0 bits;  conditional E-value: 1.4e-19
                  EEEESTTSSHHHHHHHHHHHHHHHTS-BTTB--EEEEEESSSSEEEEEE--TTEBHHHHHHHT..CTTTSBHHHHHHHHHHHHHHHHHHHHTTEEEST CS
  Pkinase_Tyr  33 vKtlkeeateeekeelleeakimkklkhpnivkllgvctkeepllivteyvkgGdLlkfLrkk..ekekltlkdllsfalqvAkGmeyLeskklvHrd 128
                  vK++ +    ++ ++    ++ +++  hpn+vk+ g  t  +  l+ +e ++gG+L + + +   + +++ + +   + +q+A+G+++L++  + H d
   KOO22921.1 204 VKSVASAIGISDPRREAAALERIQAHPHPNVVKFFGHETVPGGSLLSFECISGGELYDNVIEAlsQGTPVPTVRARTLFHQIARGVDHLHKLGIGHLD 301
                  5666555555544444445555566689***********99999************99888774556777888889999******************* PP

                  -SGGGEEEEETT.EEEE-STTTHEETTTSSEEEETTSSTSGGGGS-HHHHHHSE.........EEHHHHHHHHHHHHHHHHTTSSGTTTTSHHHHHHH CS
  Pkinase_Tyr 129 laarNvLlsenk.vvkisDfGLardiekddeyvkkeeaklpvkWmapEslkekk.........ftsksDvWsfGvllwEiftlgespypglkneevle 216
                  +   N++l+ ++ +v + D GL +d+  +   v+++  + +  +m+pE++ +k            + +DvWs Gv+l+ ++  g  p+ +  + + ++
   KOO22921.1 302 IKLENCMLHADMqTVSVVDLGLWHDL--QLGLVNQDLYRGSPAYMSPEVFVNKGrrepptmpyDAVPADVWSLGVCLFVMLM-GFYPLDEHPTISGYQ 396
                  ********986559************..7777999999999********999888999999955678***********7776.999999999988888 PP

                  HHHTTE CS
  Pkinase_Tyr 217 klkegk 222
                  +l+e++
   KOO22921.1 397 HLQEQH 402
                  888776 PP

>> Kdo  Lipopolysaccharide kinase (Kdo/WaaP) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.0   0.1   9.5e-07    0.0028     116     166 ..     274     321 ..     261     323 .. 0.86

  Alignments for each domain:
  == domain 1  score: 17.0 bits;  conditional E-value: 9.5e-07
         Kdo 116 aeelkrallkavgrliaklhragvnHadlyaknillqqeeeeeaeiwliDl 166
                 +  + r+l+++++r +  lh++g+ H d+   n +l+++    ++++++Dl
  KOO22921.1 274 PTVRARTLFHQIARGVDHLHKLGIGHLDIKLENCMLHADM---QTVSVVDL 321
                 455678899*****************************98...89999998 PP

>> DnaJ  DnaJ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.0   4.1e-06     0.012      11      50 ..      15      59 ..      11      62 .. 0.74

  Alignments for each domain:
  == domain 1  score: 15.7 bits;  conditional E-value: 4.1e-06
                TG-HHHHHHHHHHHHHHHSTTTSCCHH.....HHHHHHHHHHHHH CS
        DnaJ 11 dasedeIkkaYrklalkyHPDknpkdp.....eaeekFkeineAy 50
                 a+e e+k aY+k  + +HPD+ +k       eaee  k +++A+
  KOO22921.1 15 GAEEREVKLAYHKATRLLHPDRLSKRDlsvriEAEEVLKVLTTAF 59
                5899*****************664433334567777777777665 PP

>> Kinase-like  Kinase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.0   1.2e-05     0.035     147     252 ..     280     388 ..     261     405 .. 0.83

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 1.2e-05
  Kinase-like 147 lllTlqlirlaanLqakglvhgkftvdnllldekg.glmlggftaLvragtkvvlseve....kgfaPpEllgsrggytrknktkmthkldaWqlGlv 239
                   l   q+ r + +L+++g+ h +++ +n +l+ +   + + +++ L+ + + + +++       ++  pE++ ++g+ ++      + + d+W lG+ 
   KOO22921.1 280 TLF-HQIARGVDHLHKLGIGHLDIKLENCMLHADMqTVSVVDLG-LWHDLQLGLVNQDLyrgsPAYMSPEVFVNKGRREPPTMPYDAVPADVWSLGVC 375
                  444.789999********************99886257788875.99999999887665567789***********9666555566889********* PP

  Kinase-like 240 iyriwclklPltl 252
                   + +     Pl++
   KOO22921.1 376 LFVMLMGFYPLDE 388
                  ***9888888776 PP

>> Nucleoporin_FG  Nucleoporin FG repeat region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.3   6.8      0.05   1.5e+02      36      81 ..     153     200 ..      67     212 .. 0.57

  Alignments for each domain:
  == domain 1  score: 3.3 bits;  conditional E-value: 0.05
  Nucleoporin_FG  36 tatasggglfgatsqtaasgglFGstnattqtta....tgglFGstaata 81 
                     + + ++++ f     +  s++ FG++++t  + a     + lFG++a+++
      KOO22921.1 153 SPPVTASSPFDD--PPGGSSNPFGAAPTTRVSDAslsaATALFGAAAPSE 200
                     222222234443..455556666666666655555666666666665554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (477 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       386  (0.0215294); expected 358.6 (0.02)
Passed bias filter:                      308  (0.0171789); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.49u 0.25s 00:00:00.74 Elapsed: 00:00:00.39
# Mc/sec: 3662.69
//
Query:       KOO22922.1  [L=175]
Description: 66s ribosomal complex subunit [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.1e-19   71.3   0.8    1.4e-14   54.7   0.0    2.1  2  Nop16     Ribosome biogenesis protein Nop16


Domain annotation for each model (and alignments):
>> Nop16  Ribosome biogenesis protein Nop16
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.4   8.4e-07     0.015       5      65 ..       9      72 ..       3      86 .. 0.61
   2 !   54.7   0.0   7.8e-19   1.4e-14     148     209 ..     103     163 ..      78     164 .. 0.87

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 8.4e-07
       Nop16  5 karssvkkakkrkksk......lkkkvnilgnpiiaenWdkkkTlkqNYkrLGLvaklnapaGgvek 65
                ++rs++ k+k  +k k       k+  +   ++  a  +++k++   NY+rLGL+a  n+  G v++
  KOO22922.1  9 RRRSTIVKVK--NKPKgigkavGKRVGRSQRFQGSALDYNEKESQFANYARLGLMADANQI-GAVKE 72
                2344444444..33334455554444455555556669******************55543.44443 PP

  == domain 2  score: 54.7 bits;  conditional E-value: 7.8e-19
       Nop16 148 eLekeaarekakkerhlsereeewlerLvekhGdDyeaMarDrkLNpmqqtegdlkrrikkw 209
                 +Le e  +    + r+  ++e+ +l +L++khG+Dy+aMarD++LN  q+t+++l++ri k+
  KOO22922.1 103 QLELEVPE-GLVTIRPVPAGERIVLLKLMAKHGTDYAAMARDTRLNALQHTAAHLRKRIAKL 163
                 55555555.5667789999****************************************996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (175 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       446  (0.0248759); expected 358.6 (0.02)
Passed bias filter:                      329  (0.0183502); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.24s 00:00:00.64 Elapsed: 00:00:00.41
# Mc/sec: 1285.97
//
Query:       KOO22923.1  [L=633]
Description: imprinted and ancient [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.4e-26   92.8   0.0    4.2e-26   91.3   0.0    1.8  1  UPF0029        Uncharacterized protein family UPF0029
    0.00016   21.9   0.0    0.00099   19.4   0.0    2.0  1  RWD            RWD domain
  ------ inclusion threshold ------
      0.026   13.3   0.6      0.037   12.8   0.6    1.1  1  DUF1663        Protein of unknown function (DUF1663)
       0.19   11.8   0.9       0.52   10.4   0.9    1.7  1  DUF3775        Protein of unknown function (DUF3775)
        2.1    8.9   8.0         16    6.0   1.5    2.8  2  K_channel_TID  Potassium channel Kv1.4 tandem inactivation do


Domain annotation for each model (and alignments):
>> UPF0029  Uncharacterized protein family UPF0029
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   91.3   0.0   1.2e-29   4.2e-26       4     105 .]     180     283 ..     178     283 .. 0.95

  Alignments for each domain:
  == domain 1  score: 91.3 bits;  conditional E-value: 1.2e-29
                 EEEEEEEE-SSHHHHHHHHHHH--..TT..SSEEEEEE....EE....TTEE-TTSSTSHHHHHHHHHHTTB-SEEEEEEEE--SS--HHHHHHHHHHH CS
     UPF0029   4 rFiavlaaveseeevkaileelkkenkk..athniyAyrlrqkvekvnedsdddgEpaAGkkllelLekeklenvlvvvtRwfGGikLGpgrlraisea 100
                 +F+a++a+v+s  +vk +l++l+++++   athn++Ayr+ ++ + + +d dddgE+++G kl  lLe ++++nvlvvv+RwfGG++LGp r++ i+++
  KOO22923.1 180 EFQAHVATVTSMGHVKWALARLLSDKRIarATHNMLAYRYVDERGVQVSDNDDDGESSSGTKLAALLELANVNNVLVVVSRWFGGVLLGPVRFKYIAST 278
                 7*******************9999777578**************999999************************************************* PP

                 HHHHH CS
     UPF0029 101 areaL 105
                 ar +L
  KOO22923.1 279 ARALL 283
                 *9875 PP

>> RWD  RWD domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.4   0.0   2.8e-07   0.00099       3     115 ..       8      97 ..       7      98 .. 0.85

  Alignments for each domain:
  == domain 1  score: 19.4 bits;  conditional E-value: 2.8e-07
                 HHHHHHHHHHHSTTTCCCCHT--EE--S-EEEEEEECECCCC....TT-CEEEEEEEEE-SSTT.SS--EEEEEECCSS-HHHHHHHHHHHHHHHHHTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
         RWD   3 qeqEleaLesIypdefevienenysikleikikldededeedsefeekkkpslkleiklpeeYP.eeaPiislsstenlpkeqvksleekleelaeenl 100
                 ++ E eaL +Iy d +e  +  ++     i++ ++                   le+ lp +YP +++P   l+ +  l++++++ l  ++  l +   
  KOO22923.1   8 RAAEHEALHAIYADALEGDAAGPWI----IDLGVNGA----------------ILECFLPDDYPsTSPPTPVLHIPA-LSDDERAALVAEITWLFD--- 82 
                 67899***********999999999....77777776................79*********5555555555555.***********9999888... PP

                 TS--CHHHHHHHHHH CS
                 xxxxxxxxxxxxxxx RF
         RWD 101 gepvifalidwlken 115
                 g +v+++++++l+e 
  KOO22923.1  83 GCEVVYSWAEHLREA 97 
                 ************997 PP

>> DUF1663  Protein of unknown function (DUF1663)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.6     1e-05     0.037      20      99 ..      87     166 ..      83     227 .. 0.87

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 1e-05
     DUF1663  20 vsswrklqlreaeharsgreileaar.aaaededssltspissyavnlGfspqpdvalnathekdggplsfepswaisfds 99 
                 v sw   +lrea   r+  e  eaa  aa  d d  +    s+ a   Gf+  p   +     +  g  s++ps+a+ + s
  KOO22923.1  87 VYSWAE-HLREALTERAESEAAEAAAvAAVADADQQIDQLASAMADASGFTFMPATSRYGQRVRHFGAESIDPSFAVEVTS 166
                 567765.79**************8762677899*******************************************98765 PP

>> DUF3775  Protein of unknown function (DUF3775)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.9   0.00014      0.52       8      61 ..      62     116 ..      60     119 .. 0.88

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00014
     DUF3775   8 iesLnedeqaeLvA.LmwiGRgdfeaeewdeaveeAreeesertadyLlgkplla 61 
                 i +L++de+a LvA ++w+  g++ +  w+e ++eA  e++e +a +  + + +a
  KOO22923.1  62 IPALSDDERAALVAeITWLFDGCEVVYSWAEHLREALTERAESEAAEAAAVAAVA 116
                 779***********99**************************9997766655555 PP

>> K_channel_TID  Potassium channel Kv1.4 tandem inactivation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.0   1.5    0.0045        16      24      50 ..      93     118 ..      81     124 .. 0.69
   2 ?    5.7   0.6    0.0057        21      40      64 ..     279     303 ..     271     314 .. 0.73

  Alignments for each domain:
  == domain 1  score: 6.0 bits;  conditional E-value: 0.0045
  K_channel_TID  24 qararererlahsraaaaaavaaaaaa 50 
                      r    er a+s aa aaavaa a a
     KOO22923.1  93 HLREALTER-AESEAAEAAAVAAVADA 118
                    444444555.69999999999987744 PP

  == domain 2  score: 5.7 bits;  conditional E-value: 0.0057
  K_channel_TID  40 aaaavaaaaaaaeGeGGggGGshkq 64 
                    a a   +++ ++ G GGg GG+ k 
     KOO22923.1 279 ARALLEETGRCTSGPGGGDGGKGKD 303
                    3444556679**********98765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (633 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       651  (0.0363099); expected 358.6 (0.02)
Passed bias filter:                      499  (0.027832); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.60u 0.26s 00:00:00.86 Elapsed: 00:00:00.41
# Mc/sec: 4616.79
//
Query:       KOO22924.1  [L=79]
Description: nucleotide excision repair complex subunit xpc-like protein isoform 2 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00052   20.4   0.0    0.00073   19.9   0.0    1.2  1  BHD_3      Rad4 beta-hairpin domain 3
     0.0081   16.0   1.1     0.0093   15.8   1.1    1.0  1  DUF501     Protein of unknown function (DUF501)
  ------ inclusion threshold ------
      0.027   14.4   2.7      0.027   14.4   2.7    1.6  2  TPR_10     Tetratricopeptide repeat
      0.027   14.4   0.4      0.031   14.3   0.4    1.1  1  Phage_GPL  Phage head completion protein (GPL)


Domain annotation for each model (and alignments):
>> BHD_3  Rad4 beta-hairpin domain 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.9   0.0   1.6e-07   0.00073      44      76 .]       1      31 [.       1      31 [. 0.90

  Alignments for each domain:
  == domain 1  score: 19.9 bits;  conditional E-value: 1.6e-07
                EEEEEE-SS-EE..EEEEEEEEEGGGHHHHHHH CS
       BHD_3 44 vvGFefkgrrgkgiPvidGivVaeedeeavlea 76
                +vGF+++   g+++P+i+G vV+ e+++ ++ea
  KOO22924.1  1 MVGFDVH--DGRAVPKIEGAVVCIEHAQLLREA 31
                69*****..66778***************9985 PP

>> DUF501  Protein of unknown function (DUF501)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   1.1   2.1e-06    0.0093      37      95 ..      13      71 ..      11      78 .. 0.82

  Alignments for each domain:
  == domain 1  score: 15.8 bits;  conditional E-value: 2.1e-06
      DUF501 37 pelvkavsrLEaeglvkaleeklaedeelaqalekahaeyaakReell.teeerseleks 95
                p++  av  +E+++l +++++++++++e +qa+ ++h+e++a  ++ll + + r+++e++
  KOO22924.1 13 PKIEGAVVCIEHAQLLREASAAIRDQAEDQQAH-ECHEEALALWRQLLrSMAVRERIERQ 71
                89999*******************999988887.89999999988888455666666654 PP

>> TPR_10  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.4   2.7     6e-06     0.027      11      36 ..      34      59 ..      25      59 .. 0.89
   2 ?   -3.4   0.1       2.2     1e+04      28      34 ..      61      67 ..      60      68 .. 0.72

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 6e-06
      TPR_10 11 alrqrgrydeAealleealairrrll 36
                a r++ + ++A + +eeala++r+ll
  KOO22924.1 34 AIRDQAEDQQAHECHEEALALWRQLL 59
                568999******************98 PP

  == domain 2  score: -3.4 bits;  conditional E-value: 2.2
      TPR_10 28 alairrr 34
                ++a+r+r
  KOO22924.1 61 SMAVRER 67
                6788887 PP

>> Phage_GPL  Phage head completion protein (GPL)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   0.4   6.9e-06     0.031      80     126 ..      17      65 ..       8      75 .. 0.85

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 6.9e-06
   Phage_GPL  80 rAVyarAkAdLleryrdidttaagekkaeelettrddllrda..rwair 126
                  AV+++ +A+Ll++     + +a +++a+e ++++  l+r+   ++a+r
  KOO22924.1  17 GAVVCIEHAQLLREASAAIRDQAEDQQAHECHEEALALWRQLlrSMAVR 65 
                 69**************************************852256665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (79 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       942  (0.0525406); expected 358.6 (0.02)
Passed bias filter:                      533  (0.0297284); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.36u 0.23s 00:00:00.59 Elapsed: 00:00:00.38
# Mc/sec: 631.09
//
Query:       KOO22925.1  [L=336]
Description: malate dehydrogenase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.3e-33  116.3   0.0    1.8e-33  115.9   0.0    1.2  1  Ldh_1_C          lactate/malate dehydrogenase, alpha/beta C-t
    2.1e-30  105.7   0.1    3.5e-30  104.9   0.1    1.4  1  Ldh_1_N          lactate/malate dehydrogenase, NAD binding do
  ------ inclusion threshold ------
       0.02   14.8   0.0       0.04   13.9   0.0    1.5  1  Glyco_hydro_3_C  Glycosyl hydrolase family 3 C-terminal domai


Domain annotation for each model (and alignments):
>> Ldh_1_C  lactate/malate dehydrogenase, alpha/beta C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  115.9   0.0     3e-37   1.8e-33       1     164 [.     161     327 ..     161     330 .. 0.90

  Alignments for each domain:
  == domain 1  score: 115.9 bits;  conditional E-value: 3e-37
                 THHHHHHHHHHHHHHHTS.-GGGEE--EEBSSST..........ETTEEHHHHHTTSTTSTHHHHHHHHHHHHHHHHHHHHHHTTSSSS-HHHHHHHHH CS
     Ldh_1_C   1 TtLDivRaktflaekagv.tprsvkvtViGgHsg..........vtiipllsqvkellklsekqleeliervqnggdevvkakkGagsatlsmAvAgak 88 
                 T+LD++Ra  +la kagv  +++  v ++G+Hs+          v++ p       ++++  + + e+i++vq++g+++++a+k   s+++s+AvA+a+
  KOO22925.1 161 TRLDHNRATSQLAMKAGVaMTDVAGVFIWGNHSStqypdvrhatVKGTPA-----LSVVDAAWLEGEFITKVQKRGAAIIEARK--LSSAMSAAVAIAD 252
                 9*****************778888**********9**9977766666666.....4455669*********************6..************* PP

                 HHHHHHTTH.TEEEEEEEEEESC.CCECCSSEEEEEEEEEEETTEEEEE-------HHHHHHHHHHHHHHHHHHHHHH CS
     Ldh_1_C  89 fveallrdt.keilsagvyldge.vglkdqeieyfsvPvvlgknGvekvleilklndfeeekleksvkeLkkeiekgl 164
                 + ++++++t ++ +s+++++    +g++ +  + +s+Pv+   +G + ++ +l++++f++ +++++ keLk+e   ++
  KOO22925.1 253 HLRDWIKGTnGRAVSMAIFQSEGaYGVDSD--ICYSFPVTCD-QGEWTIVMGLPIDAFSKTRMDATHKELKEERALAE 327
                 *********878899999975445*****9..8899******.********9********************987665 PP

>> Ldh_1_N  lactate/malate dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  104.9   0.1   5.9e-34   3.5e-30       1     139 [.       9     156 ..       9     158 .. 0.92

  Alignments for each domain:
  == domain 1  score: 104.9 bits;  conditional E-value: 5.9e-34
                 EEEEEETTTSHHHHHHHHHHHHT.TSSSE....EEEE-SSHH..HHHHHHHHHHHCHCCSTS-EEEEESSGGGGTTESEEEE--S-SS-TTTTHHHHHH CS
     Ldh_1_N   1 vkvavvGaaGgiGqslalllank.klade....laLlDiake..kleGvaldlshistflsvkvkvsekeeealkdadvvvitagvprkpGetRddLlk 92 
                 +kv+++GaaG+i++sl+ +l+ +  ++ +    l LlDi+++  +l Gv+++l++ +++ ++ +  + ++  a+kdadv v  +++prk+G++R+d + 
  KOO22925.1   9 IKVVLTGAAGQIAYSLLPKLLDGsVFGADqpvfLGLLDIQPSmtMLGGVIMELEDLAYPCYAGSVGTTDPAVAFKDADVCVFLGAFPRKEGMERKDVMG 107
                 59*******************998899889**********9988899*************99999999******************************* PP

                 HHHHHHHHHHHHHHHHT.TTSEEEE-SSSHHHHHHHHHH.HHTS-GGGE CS
     Ldh_1_N  93 vNakIvkeiveaiakva.pnaivlvvsNPvdiltevlkk.asglpkkrv 139
                 +N+kI++e+++a+a++a p++++lvv+NP+++++ +l   ++g +++++
  KOO22925.1 108 MNVKIFNEQGAAVAAHAkPTVKCLVVGNPANTNAAILLSaMGGKIPAKN 156
                 *****************9*************999887541566666655 PP

>> Glyco_hydro_3_C  Glycosyl hydrolase family 3 C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.0   6.7e-06      0.04      58     145 ..      63     150 ..      10     163 .. 0.74

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 6.7e-06
                      ..........-HHHHHHHHHHHTSEEEEEEEES...SB-TTSCSGHHSSTTHHHHHHHHHHTTSSEEEEEEESSGG--TTTGTTTEEEEEE-S- CS
                      x........xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Glyco_hydro_3_C  58 s........eegideaveaakeaDvavvvvgedpeiegEgvDrtdlalpeaqdelikavaaanknvvvvlqsggpvavepwkeenvkAilaawl 143
                      +        + g+++ + a k+aDv+v+     ++ + E  D   ++++   +e  +avaa+ k++v  l+ g+p +++       +Ail +++
       KOO22925.1  63 DlaypcyagSVGTTDPAVAFKDADVCVFLGAFPRKEGMERKDVMGMNVKI-FNEQGAAVAAHAKPTVKCLVVGNPANTN-------AAILLSAM 148
                      45555666656677777899******988777766688888999999994.455568999***************9773.......35665555 PP

                      -G CS
                      xx RF
  Glyco_hydro_3_C 144 pG 145
                      +G
       KOO22925.1 149 GG 150
                      55 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (336 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       491  (0.0273858); expected 358.6 (0.02)
Passed bias filter:                      417  (0.0232584); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.48u 0.24s 00:00:00.72 Elapsed: 00:00:00.41
# Mc/sec: 2446.88
//
Query:       KOO22926.1  [L=405]
Description: serine threonine-protein kinase nek1 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.4e-44  152.4   0.0    2.1e-44  151.9   0.0    1.2  1  Pkinase          Protein kinase domain
    5.3e-27   94.7   0.0    6.7e-27   94.4   0.0    1.1  1  Pkinase_Tyr      Protein tyrosine kinase
  ------ inclusion threshold ------
       0.01   15.7   1.2        1.5    8.7   0.0    2.9  3  APH              Phosphotransferase enzyme family
      0.012   15.0   0.0      0.019   14.3   0.0    1.3  1  Kdo              Lipopolysaccharide kinase (Kdo/WaaP) family
      0.081   11.4   0.0       0.11   11.0   0.0    1.1  1  Nucleoporin_FG2  Nucleoporin FG repeated region
       0.16   10.7   0.0       0.28    9.9   0.0    1.3  1  Pkinase_fungal   Fungal protein kinase


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  151.9   0.0   7.1e-48   2.1e-44       1     255 [.      68     323 ..      68     331 .. 0.84

  Alignments for each domain:
  == domain 1  score: 151.9 bits;  conditional E-value: 7.1e-48
                 EEEEEEEEEESSEEEEEEEETTTTEEEEEEEEECHCHCHHHHHHHHHHHHHHHHHSCTTB--EEEEEEE.....SSEEEEEEE--TTEBHHHHHH...H CS
     Pkinase   1 yekleklGeGsfGkVykaveketgkivAvKkikkekakkkkekkvlrEikilkklkhpnivrlyevfee.....kdelylvleyveggeladlle...r 91 
                 y+++++l +G+fG+ + a+  ++gk++++K++  + ++  +  ++l+E ++l+kl+hpn+v++ +vf +       ++ +v+e++ gg+l d+le   +
  KOO22926.1  68 YVNKHTLAKGGFGEAMLAT--RQGKQYVLKRVGCDTINAAN--TALKEASLLQKLDHPNVVKFEDVFLHrhdngGCSVAIVMEFCAGGDLIDRLEcsrN 162
                 66788999***********..79************999966..5***********************998777777899****************9966 PP

                 HSS--HHHHHHHHHHHHHHHHHHHHTTEE-SS-SGGGEEEE.TTTEEEE-SGTTSEESSSSCS......BCTTTSCGGGS-HHHHTTSCBSHHHHHHHH CS
     Pkinase  92 kgslseeeakkiakqilegleylHskgiiHrDlKpeNiLid.ekgelKitDFGlakelesssk......ltsfvgtseYlAPEvlkeneyskkvDvWsl 183
                 ++ lse ++  ++++++++l+++H++g++HrDlK++Ni+++  ++ +K++DFGla+    + +       +s++gt  Y++PEv + ++y++++D ++l
  KOO22926.1 163 ERPLSELTTFVFLESLCHALHHVHCNGVLHRDLKSSNIFVSrGDKAVKLGDFGLACSGLPRRRltgsprRMSRCGTAMYMSPEVADCKPYGAASDTYGL 261
                 677**************************************66777*********98766666677777****************************** PP

                 HHHHHHHHHSS-STTTSSHHHHHHHHHHTHHHHHHHCTSHH...HHHTTS-HHHHHHHHHHT-SSGCCSTTH CS
     Pkinase 184 GvilyelltgkppfsgekgkekvekeldqlekilkilgetkeklpeaseiseeakdllkkllkkdpkkRlta 255
                 G++l+ell ++++ + +  +e  +  +++  +++        + + ++++ e   dl+ ++l++ pk+R+  
  KOO22926.1 262 GCVLLELLLRHQLRERRPFEE-RKDYIKE--ALAA------AAGHGWHTF-ERSSDLVWRMLDESPKSRIEL 323
                 *********999888332222.2222222..1222......233344444.556789999999999999875 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   94.4   0.0   2.2e-30   6.7e-27       4     200 ..      71     270 ..      68     322 .. 0.86

  Alignments for each domain:
  == domain 1  score: 94.4 bits;  conditional E-value: 2.2e-30
                  EEEEEEESSEEEEEEEEETTTTSSEEEEEEEEESTTSSHHHHHHHHHHHHHHHTS-BTTB--EEEEEESSSS.....EEEEEE--TTEBHHHHHHHT. CS
  Pkinase_Tyr   4 gkklGeGafGkVvegtlkgekekkevkVavKtlkeeateeekeelleeakimkklkhpnivkllgvctkeep.....llivteyvkgGdLlkfLrkk. 95 
                  +++l++G fG+ + +t +        + ++K +  ++ +   +  l+ea++++kl+hpn+vk+  v ++++      + iv+e+++gGdL + L+ + 
   KOO22926.1  71 KHTLAKGGFGEAMLATRQ------GKQYVLKRVGCDTINA-ANTALKEASLLQKLDHPNVVKFEDVFLHRHDnggcsVAIVMEFCAGGDLIDRLECSr 161
                  67999******9999998......6677899997776666.78889**********************5554567789****************9762 PP

                  CTTTSBHHHHHHHHHHHHHHHHHHHHTTEEEST-SGGGEEEEE.TTEEEE-STTTHEETTTSSEE...EETTSSTSGGGGS-HHHHHHSEEEHHHHHH CS
  Pkinase_Tyr  96 ekekltlkdllsfalqvAkGmeyLeskklvHrdlaarNvLlse.nkvvkisDfGLardiekddey...vkkeeaklpvkWmapEslkekkftsksDvW 189
                  ++++l+  +++ f   +++++++++ + ++Hrdl + N+++s+ +k vk++DfGLa +   + +     ++ ++     +m+pE+ + k +  +sD +
   KOO22926.1 162 NERPLSELTTFVFLESLCHALHHVHCNGVLHRDLKSSNIFVSRgDKAVKLGDFGLACSGLPRRRLtgsPRRMSRCGTAMYMSPEVADCKPYGAASDTY 259
                  567778888888899***************************95679*********99866666534345566667889******************* PP

                  HHHHHHHHHHT CS
  Pkinase_Tyr 190 sfGvllwEift 200
                    G +l E++ 
   KOO22926.1 260 GLGCVLLELLL 270
                  ********986 PP

>> APH  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.3   0.0     0.011        32      18      93 ..      86     164 ..      81     186 .. 0.76
   2 ?    8.7   0.0   0.00049       1.5     167     201 ..     189     222 ..     173     235 .. 0.83
   3 ?   -1.7   1.5      0.74   2.2e+03      95      95 ..     330     330 ..     245     403 .. 0.48

  Alignments for each domain:
  == domain 1  score: 4.3 bits;  conditional E-value: 0.011
                 ETT.--EEEEEE-TT..S-HHHHHHHHHHHHHHHHTT-.B--B-CTTBS-EEETTEEEEEEE----EE-SSHHHHHHHHH CS
         APH  18 tpa.gryvlrrnppa..raaeeirrevallrlLakagv.pvPevlagdtddeeigllfalieyvpgrsllrklsaaqlpe 93 
                 t + ++yvl+r+      aa+++ +e+ ll+ L   +v +  e + +   d++   ++ ++e++ g +l ++l ++  ++
  KOO22926.1  86 TRQgKQYVLKRVGCDtiNAANTALKEASLLQKLDHPNVvKF-EDVFLHRHDNGGCSVAIVMEFCAGGDLIDRLECSRNER 164
                 444359*****999999999999********9998878444.44444566666666999*****9999988555555554 PP

  == domain 2  score: 8.7 bits;  conditional E-value: 0.00049
                 EEE-SS-SGGGEEEC..TTEEEEE---TT-EEEEC CS
         APH 167 vllHgDlhpgNllvdpddgrvtGviDfedaglgpp 201
                 ++lH+Dl++ N+ v  ++++ + + Df++a+ g p
  KOO22926.1 189 GVLHRDLKSSNIFVS-RGDKAVKLGDFGLACSGLP 222
                 689************.4444446889999998876 PP

  == domain 3  score: -1.7 bits;  conditional E-value: 0.74
                 H CS
         APH  95 l 95 
                 +
  KOO22926.1 330 A 330
                 2 PP

>> Kdo  Lipopolysaccharide kinase (Kdo/WaaP) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   0.0   6.4e-06     0.019      56     155 ..     106     206 ..      87     225 .. 0.82

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 6.4e-06
         Kdo  56 travrEfrllkrLeeagvavpkpvaagavkvgleyrAlllterlegaqdLedllakwae..laeelkrallkavgrliaklhragvnHadlyaknillq 152
                  +a +E +ll++L +  v   + v+   + ++++   ++++e  +g   ++ l  + +e  l+e  +   l+ +  + +  h  gv H+dl   ni++ 
  KOO22926.1 106 NTALKEASLLQKLDHPNVVKFEDVFLH-RHDNGGCSVAIVMEFCAGGDLIDRLECSRNErpLSELTTFVFLESLCHALHHVHCNGVLHRDLKSSNIFVS 203
                 588999999999999999999999876.556666778899**9999765555443333455888888999****************************9 PP

         Kdo 153 qee 155
                  ++
  KOO22926.1 204 RGD 206
                 986 PP

>> Nucleoporin_FG2  Nucleoporin FG repeated region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   3.7e-05      0.11     452     498 ..     319     365 ..     268     376 .. 0.77

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 3.7e-05
  Nucleoporin_FG2 452 pfssvpnaaavamaa.tltqqqqpttGtqaslGvsfGtpfasavgtgl 498
                         ++p aaava aa ++  + qp +Gt++s G++  +p+ s+v+ + 
       KOO22926.1 319 SRIELPAAAAVAAAAiSIMARLQPVAGTESSSGAG-AEPLVSTVSVTS 365
                      44467******99883578899***********99.579999887543 PP

>> Pkinase_fungal  Fungal protein kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   0.0   9.5e-05      0.28     320     385 ..     183     246 ..     164     254 .. 0.80

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 9.5e-05
  Pkinase_fungal 320 rsLflkagiLHrDiSenNilitdskkegerkglLiDLDlakelsddssesga...rertGTleFmaiev 385
                        +   g+LHrD    Ni +      g++   L D+ la++    ++  g+     r GT+ +m+ ev
      KOO22926.1 183 HHVH-CNGVLHRDLKSSNIFVS----RGDKAVKLGDFGLACSGLPRRRLTGSprrMSRCGTAMYMSPEV 246
                     4555.689************99....7899999********9876555554455599********9887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (405 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       755  (0.0421105); expected 358.6 (0.02)
Passed bias filter:                      489  (0.0272742); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.52u 0.25s 00:00:00.77 Elapsed: 00:00:00.41
# Mc/sec: 2962.28
//
Query:       KOO22927.1  [L=362]
Description: cytochrome c peroxidase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.8e-46  158.0   0.0    5.6e-46  157.1   0.0    1.4  1  peroxidase  Peroxidase


Domain annotation for each model (and alignments):
>> peroxidase  Peroxidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  157.1   0.0   3.1e-50   5.6e-46      15     229 .]      79     305 ..      68     305 .. 0.92

  Alignments for each domain:
  == domain 1  score: 157.1 bits;  conditional E-value: 3.1e-50
                 HCHHHHHHHHHHHTT.......SSTTSCHHHTCCHHCSGGGTTTHHHHHHHHHHHHHCTT.....S-HHHHHHHHHHHHHHCTT--..--EE---S-SS CS
  peroxidase  15 mgpsllrlafhdcfv.......gGcdgsvlllepektapaNaslrkgldvldaikakleaacpgvvScADlialaardavelaggplvpvslGRrDate 106
                 ++p l+rla+h+++        gG +g++++++pe +++ Na+l++++ vl +ik+++++     +S+ADli++a+ +a+e++ggp++ +++GR Da +
  KOO22927.1  79 VAPMLVRLAWHSSGSyakatddGGSQGGTIRFQPEINHGGNAGLKHAIGVLAPIKENYPS-----ISWADLIIYAGVVAIEAMGGPVIGFTPGRSDAPT 172
                 57899******************************************************9.....*********************99*********** PP

                 GGGS-S...........-.-TS-HHHHHHHHHHHT--HHHHHHHHGGGGC-EESHH............SS-GGGT....HHS........EETS-STHH CS
  peroxidase 107 ssasevsnl........PdptasvdelrdkfarkgltdeelvaLsGaHtiGkahcssfsrlya.aadpaldaayaaekCasgntelvdldtptkfdnsy 196
                 ++ + +++         Pd  ++ ++lrd f r+g++d+e+v LsGaH++G++h     r  +                         ++ +++f+n+y
  KOO22927.1 173 PNVAPSKDKrftpddrlPDAAQTQSHLRDVFYRMGFDDREIVCLSGAHAVGRCHTD---RSGFwG---------------------PWTNAENAFSNEY 247
                 ***999444689999999************************************33...222211.....................1223679****** PP

                 HHHHCC.........................T-EEEHHHHHHHHSCCCHHHHHHCCC- CS
  peroxidase 197 fknlle.........................krgllrsDqvllsdsetralvekyaes 229
                 fk lle                           ++l+sD++l++d+ ++ +ve ya++
  KOO22927.1 248 FKFLLEktwtvkkthegkpwtgpkqyeadggALMMLPSDLALIEDAAFKRWVELYAKD 305
                 *******************************************************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (362 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       310  (0.0172904); expected 358.6 (0.02)
Passed bias filter:                      283  (0.0157845); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.25s 00:00:00.71 Elapsed: 00:00:00.42
# Mc/sec: 2597.24
//
Query:       KOO22928.1  [L=910]
Description: hypothetical protein Ctob_002578 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    0.00011   22.2   7.9    0.00012   21.9   0.2    3.2  3  SLATT_1         SMODS and SLOG-associating 2TM effector domai
  ------ inclusion threshold ------
      0.037   14.5   7.2         23    5.5   0.0    3.6  2  DUF4231         Protein of unknown function (DUF4231)
      0.085   12.7   1.2       0.18   11.6   0.5    1.8  2  Kei1            Inositolphosphorylceramide synthase subunit K
       0.29   11.6   0.9          1    9.9   0.6    2.0  2  NPV_P10         Nucleopolyhedrovirus P10 protein
          4    7.8  11.7        7.4    7.0  11.7    1.4  1  MT0933_antitox  MT0933-like antitoxin protein


Domain annotation for each model (and alignments):
>> SLATT_1  SMODS and SLOG-associating 2TM effector domain 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.1   1.4     0.049   1.8e+02      19      63 ..     463     507 ..     455     524 .. 0.82
   2 ?   -0.7   0.0      0.35   1.2e+03      31      85 ..     558     614 ..     554     640 .. 0.60
   3 !   21.9   0.2   3.5e-08   0.00012       1     114 [.     769     882 ..     769     884 .. 0.91

  Alignments for each domain:
  == domain 1  score: 2.1 bits;  conditional E-value: 0.049
     SLATT_1  19 eneraakrwrlllillellalllaalrafgelsvdlvgvlaavaa 63 
                 + er a++++l+l+ll+++ ++++++ a+ +++ + +++laa+a+
  KOO22928.1 463 YFERVADFLQLTLYLLSVVTTFITVVYALAVAEEEQTAALAAAAG 507
                 5678899999***********999999999999977777776664 PP

  == domain 2  score: -0.7 bits;  conditional E-value: 0.35
     SLATT_1  31 lillellalllaalr.afgelsvdlvgvlaav..aaallaWlelkqyeelaaaYslaa 85 
                 +i+l ++a+l+ ++r ++   + ++++ l a+  +aa + +  ++   +++  Y +aa
  KOO22928.1 558 MIILPMVATLIGTIRsKLRPRE-KWAACLMAAnqIAAQIYYYRMRAAWPTSVGYDTAA 614
                 5566666666666663222222.34444433322566666666666666666666666 PP

  == domain 3  score: 21.9 bits;  conditional E-value: 3.5e-08
     SLATT_1   1 YlreRveeqldwYrkkaeeneraakrwrlllillellalllaalrafgelsvdlvgvlaavaaallaWlelkqyeelaaaYslaaeeLeiiraalea.. 97 
                 Y++ Rv++  +  +k+a + +++ +r++++++l++  +++la l+     + +++++++ava+   a +++  + ++  + ++a +eL ++  ++e+  
  KOO22928.1 769 YVECRVRSICKLLEKRAPALSNRLNRLEYAQMLANSSGAVLAFLG-----QSNWIAITVAVASVAGAMQDYFYLPSQLGETNRAMQELHNLMIEFESfs 862
                 999******************************************.....66699999999999999999999999********************999 PP

     SLATT_1  98 ...eateeewaklVadaEea 114
                    ++  +   k+V+++Ee 
  KOO22928.1 863 lvqRNMSRVKNKFVSQVEES 882
                 99655666667999999985 PP

>> DUF4231  Protein of unknown function (DUF4231)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.5   4.3    0.0065        23      47      94 ..     555     602 ..     462     604 .. 0.81
   2 ?    5.5   0.0    0.0063        23      15      74 ..     793     846 ..     779     859 .. 0.73

  Alignments for each domain:
  == domain 1  score: 5.5 bits;  conditional E-value: 0.0065
     DUF4231  47 kiltallsalvailaaleeffrykerWrryRstaEsLktekwlflaka 94 
                  ++  +l  +++++  + +  r++e+W +  ++a+++ ++ + + ++a
  KOO22928.1 555 SFTMIILPMVATLIGTIRSKLRPREKWAACLMAANQIAAQIYYYRMRA 602
                 56788999************************************9987 PP

  == domain 2  score: 5.5 bits;  conditional E-value: 0.0063
     DUF4231  15 rrfrllrlitivlgallpilvssklgagvsvlkiltallsalvailaaleeffrykerWr 74 
                 +r   +++++   ga+l++l        +++++i++a++s++ a+  ++    + +e+ r
  KOO22928.1 793 NRLEYAQMLANSSGAVLAFLGQ------SNWIAITVAVASVAGAMQDYFYLPSQLGETNR 846
                 4444467777777888888888......9*************998888777777777544 PP

>> Kei1  Inositolphosphorylceramide synthase subunit Kei1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.5   5.1e-05      0.18      13      76 ..     443     505 ..     436     509 .. 0.82
   2 ?   -2.3   0.0      0.95   3.4e+03      49      97 ..     556     604 ..     553     633 .. 0.66

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 5.1e-05
        Kei1  13 elilllallNKvaGlYGlLalltGaplsflqlsmylySllvlvllalllphirkesplkillla 76 
                 e+i++l+   +   lY   + +     +flql++yl+S+++ +++++ + ++ +e+++ +l+ a
  KOO22928.1 443 EMICILTAWKRHITLYENACYFE-RVADFLQLTLYLLSVVTTFITVVYALAVAEEEQTAALAAA 505
                 66666666666677777777777.6689**************************9988888876 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 0.95
        Kei1  49 ySllvlvllalllphirkesplkilllavlYllDtvistaytvlFavdW 97 
                   +++l ++a+l+  ir++   +    a l ++ ++   +y +   ++W
  KOO22928.1 556 FTMIILPMVATLIGTIRSKLRPREKWAACLMAANQIAAQIYYYRMRAAW 604
                 5567777788888888876544444445566666666666666655555 PP

>> NPV_P10  Nucleopolyhedrovirus P10 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   0.6   0.00028         1       8      66 ..     725     782 ..     720     790 .. 0.79
   2 ?   -2.0   0.0       1.4   5.1e+03      23      56 ..     820     853 ..     818     873 .. 0.82

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.00028
     NPV_P10   8 vIradikavddkVdalqqqvddvqenlpdvtelnekLdaqsaqLaeletkvenIqdiLn 66 
                  I ++i+a+dd Vd +  +vd+ +e+ ++ ++ ++ L +q a    +e  v +I ++L 
  KOO22928.1 725 AIEDAIEAIDDAVDEVTGAVDKADEKEKK-NNNSDDLVSQMAIDSYVECRVRSICKLLE 782
                 5899*******************999888.55667777777777777778888888777 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 1.4
     NPV_P10  23 lqqqvddvqenlpdvtelnekLdaqsaqLaelet 56 
                 +  +v++v+  ++d   l ++L + + +++el++
  KOO22928.1 820 ITVAVASVAGAMQDYFYLPSQLGETNRAMQELHN 853
                 5667899999999999999999999999999987 PP

>> MT0933_antitox  MT0933-like antitoxin protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.0  11.7    0.0021       7.4       2      44 ..     713     750 ..     712     754 .. 0.91

  Alignments for each domain:
  == domain 1  score: 7.0 bits;  conditional E-value: 0.0021
  MT0933_antitox   2 DKakdlaekhedkvdqgiDKAgdavddktGgKysdkIdkgqda 44 
                     DK+ d+ e  +d ++++i+   davd++tG     ++dk+ ++
      KOO22928.1 713 DKIEDAMEDIGDAIEDAIEAIDDAVDEVTG-----AVDKADEK 750
                     9*****************************.....78888877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (910 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       780  (0.0435049); expected 358.6 (0.02)
Passed bias filter:                      623  (0.0347482); expected 358.6 (0.02)
Passed Vit filter:                        69  (0.00384851); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.73u 0.30s 00:00:01.03 Elapsed: 00:00:00.43
# Mc/sec: 6402.77
//
Query:       KOO22929.1  [L=402]
Description: cd4-specific ankyrin repeat protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.8e-19   68.7   0.8    9.2e-11   42.2   0.3    2.3  2  Ank_2     Ankyrin repeats (3 copies)
    2.4e-16   59.6   4.7      7e-06   26.2   0.1    3.8  4  Ank_5     Ankyrin repeats (many copies)
    2.5e-15   56.6   1.6      2e-07   31.4   0.1    3.5  3  Ank_4     Ankyrin repeats (many copies)
    6.6e-13   47.6   3.5     0.0034   17.7   0.1    4.7  5  Ank_3     Ankyrin repeat
    3.4e-06   27.3  10.3       0.15   12.5   0.2    4.3  5  Ank       Ankyrin repeat


Domain annotation for each model (and alignments):
>> Ank_2  Ankyrin repeats (3 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.2   0.3   2.6e-14   9.2e-11       4      81 ..      99     186 ..      96     188 .. 0.86
   2 !   24.8   0.0   6.7e-09   2.4e-05      27      73 ..     195     248 ..     189     259 .. 0.81

  Alignments for each domain:
  == domain 1  score: 42.2 bits;  conditional E-value: 2.6e-14
       Ank_2   4 AakngnlelvklLl.egadpn..k.ngktaLhyAakngnleivklLleh......adndgrtpLhyAarsghleivklLlekgadinl 81 
                 Aa  gn + ++ L+ eg+ ++  +  g++aLh+Aa ++++e++  Ll++      +d+ g+t+L +Aa+ g+ +++  L++ gad+ +
  KOO22929.1  99 AAAMGNADECRRLIgEGFPLDacDiLGRSALHVAALGDHTEAMLVLLDAgididaQDQRGMTALALAAEAGRCDALCTLIDDGADVYI 186
                 67767788999***988777664379*********************977776666699*********************99***975 PP

  == domain 2  score: 24.8 bits;  conditional E-value: 6.7e-09
       Ank_2  27 ktaLhyAakngnleivklLleh.......adndgrtpLhyAarsghleivklLl 73 
                 +t++++Aa +g+ ei+  Ll++        d++grt++ +A ++gh+e+ ++L+
  KOO22929.1 195 WTPIMHAAARGHDEILGVLLNAapalidsKDSKGRTAMDIARENGHQEAEDVLF 248
                 8*******************9667786655699***********9977655554 PP

>> Ank_5  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.6   0.1   0.00066       2.4      23      56 .]      99     132 ..      96     132 .. 0.94
   2 !   15.1   0.1   6.2e-06     0.022      16      46 ..     125     155 ..     114     155 .. 0.86
   3 !   24.5   0.1   6.7e-09   2.4e-05       1      42 [.     144     184 ..     144     189 .. 0.93
   4 !   26.2   0.1   1.9e-09     7e-06      15      56 .]     194     235 ..     185     235 .. 0.94

  Alignments for each domain:
  == domain 1  score: 8.6 bits;  conditional E-value: 0.00066
       Ank_5  23 AakygaadvvrlLlargadlnltdsrGltaldlA 56 
                 Aa  g+ad +r+L+ +g  l+++d  G++al++A
  KOO22929.1  99 AAAMGNADECRRLIGEGFPLDACDILGRSALHVA 132
                 77789***************************98 PP

  == domain 2  score: 15.1 bits;  conditional E-value: 6.2e-06
       Ank_5  16 gntpLhvAakygaadvvrlLlargadlnltd 46 
                 g ++LhvAa + + + +++Ll+ g d++++d
  KOO22929.1 125 GRSALHVAALGDHTEAMLVLLDAGIDIDAQD 155
                 559*******************999999887 PP

  == domain 3  score: 24.5 bits;  conditional E-value: 6.7e-09
       Ank_5   1 LlehgpadvnrldgggntpLhvAakygaadvvrlLlargadl 42 
                 Ll++g +d++++d++g+t+L +Aa++g++d ++ L++ gad 
  KOO22929.1 144 LLDAG-IDIDAQDQRGMTALALAAEAGRCDALCTLIDDGADV 184
                 89***.******************************887775 PP

  == domain 4  score: 26.2 bits;  conditional E-value: 1.9e-09
       Ank_5  15 ggntpLhvAakygaadvvrlLl.argadlnltdsrGltaldlA 56 
                 ++ tp+++Aa +g+ +++ +Ll a +a ++ +ds G+ta+d+A
  KOO22929.1 194 CW-TPIMHAAARGHDEILGVLLnAAPALIDSKDSKGRTAMDIA 235
                 34.***************************************9 PP

>> Ank_4  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.9   0.1   1.1e-07    0.0004       5      55 .]      96     145 ..      94     145 .. 0.93
   2 !   31.4   0.1   5.6e-11     2e-07       2      55 .]     126     178 ..     125     178 .. 0.95
   3 !   15.9   0.0   4.2e-06     0.015       2      47 ..     195     240 ..     194     250 .. 0.83

  Alignments for each domain:
  == domain 1  score: 20.9 bits;  conditional E-value: 1.1e-07
       Ank_4   5 LhyaaisgrlelvrlLlekgadinaqdnrsGetalhiAakrgnveilklLl 55 
                 L +aa++g+ + +r+L+  g  ++a+ ++ G++alh Aa++ + e+   Ll
  KOO22929.1  96 LRKAAAMGNADECRRLIGEGFPLDAC-DILGRSALHVAALGDHTEAMLVLL 145
                 6789**********************.***************999877765 PP

  == domain 2  score: 31.4 bits;  conditional E-value: 5.6e-11
       Ank_4   2 ltaLhyaaisgrlelvrlLlekgadinaqdnrsGetalhiAakrgnveilklLl 55 
                 ++aLh aa   ++e+   Ll+ g+di+aq + +G+tal  Aa  g+ ++l  L+
  KOO22929.1 126 RSALHVAALGDHTEAMLVLLDAGIDIDAQ-DQRGMTALALAAEAGRCDALCTLI 178
                 89***************************.888***************998886 PP

  == domain 3  score: 15.9 bits;  conditional E-value: 4.2e-06
       Ank_4   2 ltaLhyaaisgrlelvrlLlek.gadinaqdnrsGetalhiAakrgn 47 
                 +t++ +aa+ g+ e++  Ll+   a i+   ++ G+ta++iA  +g+
  KOO22929.1 195 WTPIMHAAARGHDEILGVLLNAaPALIDSK-DSKGRTAMDIARENGH 240
                 799*****************8845668887.999********99887 PP

>> Ank_3  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.0         2   7.1e+03       9      29 ..      99     118 ..      96     120 .. 0.71
   2 !   16.8   0.1     2e-06     0.007       2      31 .]     125     153 ..     124     153 .. 0.95
   3 !   17.7   0.1   9.6e-07    0.0034       2      31 .]     158     186 ..     157     186 .. 0.95
   4 !    9.9   0.1   0.00033       1.2       3      23 ..     195     215 ..     195     222 .. 0.89
   5 ?   -0.5   0.0      0.85     3e+03       2      14 ..     228     240 ..     227     257 .. 0.75

  Alignments for each domain:
  == domain 1  score: -1.7 bits;  conditional E-value: 2
       Ank_3   9 AarsgnleivkfLlenkgadv 29 
                 Aa  gn + ++ L+   g ++
  KOO22929.1  99 AAAMGNADECRRLIG-EGFPL 118
                 777777766999998.56665 PP

  == domain 2  score: 16.8 bits;  conditional E-value: 2e-06
       Ank_3   2 GetpLhlAarsgnleivkfLlenkgadvna 31 
                 G+++Lh+Aa+ +++e +  Ll+  g+d++a
  KOO22929.1 125 GRSALHVAALGDHTEAMLVLLD-AGIDIDA 153
                 9*********************.9***985 PP

  == domain 3  score: 17.7 bits;  conditional E-value: 9.6e-07
       Ank_3   2 GetpLhlAarsgnleivkfLlenkgadvna 31 
                 G+t+L lAa++g+++ ++ L++  gadv++
  KOO22929.1 158 GMTALALAAEAGRCDALCTLID-DGADVYI 186
                 99********************.9***986 PP

  == domain 4  score: 9.9 bits;  conditional E-value: 0.00033
       Ank_3   3 etpLhlAarsgnleivkfLle 23 
                 +tp+++Aa  g+ ei+  Ll+
  KOO22929.1 195 WTPIMHAAARGHDEILGVLLN 215
                 8****************9998 PP

  == domain 5  score: -0.5 bits;  conditional E-value: 0.85
       Ank_3   2 GetpLhlAarsgn 14 
                 G+t++ +A ++g+
  KOO22929.1 228 GRTAMDIARENGH 240
                 8999999988887 PP

>> Ank  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.6   0.0         5   1.8e+04      20      25 ..      88      94 ..      81      96 .. 0.68
   2 ?   -2.2   0.0         2   7.1e+03       9      31 ..     100     122 ..      99     123 .. 0.71
   3 !   12.5   0.2   4.2e-05      0.15       2      31 ..     125     155 ..     124     156 .. 0.87
   4 !    9.4   0.2   0.00041       1.5       2      27 ..     158     184 ..     157     188 .. 0.76
   5 !    9.6   0.1   0.00036       1.3       3      28 ..     195     219 ..     193     226 .. 0.76

  Alignments for each domain:
  == domain 1  score: -3.6 bits;  conditional E-value: 5
                HHH.TTT CS
         Ank 20 lLL.hGA 25
                +LL +GA
  KOO22929.1 88 ALLvQGA 94
                4777998 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 2
                 HHHHTTHHHHHHHH.TTTSTTCBT CS
         Ank   9 AatngkkriiklLL.hGAnlnald 31 
                 Aa  g+++ ++ L+  G  l+a d
  KOO22929.1 100 AA-MGNADECRRLIgEGFPLDACD 122
                 45.588889999996676677776 PP

  == domain 3  score: 12.5 bits;  conditional E-value: 4.2e-05
                 SBBHHHHHHHHTTHHHHHHHH.TTTSTTCBT CS
         Ank   2 GnTPLHlAatngkkriiklLL.hGAnlnald 31 
                 G+++LH+Aa +++++    LL  G +++a+d
  KOO22929.1 125 GRSALHVAALGDHTEAMLVLLdAGIDIDAQD 155
                 89*******99987777779966******99 PP

  == domain 4  score: 9.4 bits;  conditional E-value: 0.00041
                 SBBHHHHHHHHTTHHHHHHH...H.TTTST CS
         Ank   2 GnTPLHlAatngkkriiklL...L.hGAnl 27 
                 G+T+L lAa  g    + +L   + +GA++
  KOO22929.1 158 GMTALALAAEAG---RCDALctlIdDGADV 184
                 9********888...77664332778**98 PP

  == domain 5  score: 9.6 bits;  conditional E-value: 0.00036
                 BBHHHHHHHHTTHHHHHHHHTTTSTT CS
         Ank   3 nTPLHlAatngkkriiklLLhGAnln 28 
                 +TP + Aa +g+ +i+  LL+ A ++
  KOO22929.1 195 WTPIMHAAARGHDEILGVLLNAA-PA 219
                 7****99999**********333.33 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (402 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       919  (0.0512577); expected 358.6 (0.02)
Passed bias filter:                      419  (0.02337); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.50u 0.28s 00:00:00.78 Elapsed: 00:00:00.43
# Mc/sec: 2806.89
//
Query:       KOO22930.1  [L=162]
Description: hypothetical protein Ctob_002572 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (162 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       420  (0.0234257); expected 358.6 (0.02)
Passed bias filter:                      385  (0.0214736); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.40u 0.23s 00:00:00.63 Elapsed: 00:00:00.39
# Mc/sec: 1241.02
//
Query:       KOO22931.1  [L=402]
Description: cd2 antigen cytoplasmic tail-binding protein 2 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      6e-07   29.4   0.0    1.3e-06   28.3   0.0    1.5  1  OCRE      OCRE domain
  ------ inclusion threshold ------
      0.091   13.2  14.5        1.3    9.5  14.5    2.4  1  PRP1_N    PRP1 splicing factor, N-terminal


Domain annotation for each model (and alignments):
>> OCRE  OCRE domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.3   0.0   1.4e-10   1.3e-06       4      48 ..     341     391 ..     339     395 .. 0.78

  Alignments for each domain:
  == domain 1  score: 28.3 bits;  conditional E-value: 1.4e-10
        OCRE   4 gyiydpesGyYyDpetGyYYDpntglyydsrtgr......yysydettkty 48 
                 g++ d+++  Y+++++G+Y+Dp++ ly ++++ +      yy +d+   ++
  KOO22931.1 341 GFVLDAAHRVYFNASSGLYFDPRSSLYWSASSASssqpviYYVWDAAAAQF 391
                 8**************************998775433344466666666655 PP

>> PRP1_N  PRP1 splicing factor, N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5  14.5   0.00014       1.3       1     112 [.      21     187 ..      21     208 .. 0.62

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 0.00014
                 ---S--HHHHHT------................................................................................. CS
      PRP1_N   1 aPagYvaGlGRGAtGftt..rsdigpareaeaseee...................................................kkkkkeeeeeee 46 
                 +P+gYvaG GRG +Gf+    +d+ + r a+    +                                                   k++ + +++e+ 
  KOO22931.1  21 PPPGYVAGRGRGVSGFAKpdPADLPKGRGARGAGAAgagssaelqataadvetagdehklklgadgklegdagdsreldlseterfeKQQLSMDSSEAG 119
                 8****************6336677666665444333677888888889999999999888888888888888888888888766554222222233333 PP

                 ---------.----------.--------------------HHHHHHHHHHHHHHTT-------.... CS
      PRP1_N  47 edeedlqde.endefegese.glfakaeydedDeeAdriyeeiderlderrkkrreakekeelekvre 112
                  + e ++ + e  e + +++ + + k++ d+ D+  d+   e+d+  ++  k +++++  +++ ++++
  KOO22931.1 120 FKIEAFNMDaERREGHFDDDfNYVWKRKGDDPDDANDAWLGEVDSTGESAEKVEKRRRLLQQQIEMQQ 187
                 33333333312222222222233335566666666666667888777776666555555555444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (402 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       732  (0.0408277); expected 358.6 (0.02)
Passed bias filter:                      436  (0.0243181); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.52u 0.24s 00:00:00.76 Elapsed: 00:00:00.42
# Mc/sec: 2870.76
//
Query:       KOO22932.1  [L=657]
Description: hypothetical protein Ctob_002577 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.8e-09   36.0   0.0    1.3e-08   35.0   0.0    1.4  1  fn3        Fibronectin type III domain
    5.3e-08   31.9   0.1    7.7e-07   28.2   0.1    2.6  3  EF-hand_1  EF hand
    3.1e-05   23.5   0.1     0.0017   18.2   0.1    2.9  2  EF-hand_6  EF-hand domain
    0.00016   22.0   0.0    0.00086   19.7   0.0    2.3  2  EF-hand_7  EF-hand domain pair
    0.00017   20.9   0.1    0.00017   20.9   0.1    2.0  2  EF-hand_5  EF hand
     0.0017   18.2   0.1       0.01   15.7   0.0    2.4  2  EF-hand_8  EF-hand domain pair
  ------ inclusion threshold ------
      0.011   15.7   0.8      0.038   14.0   0.6    2.0  1  SOAR       STIM1 Orai1-activating region
      0.093   12.7   0.0       0.24   11.3   0.0    1.6  2  EF-hand_4  Cytoskeletal-regulatory complex EF hand


Domain annotation for each model (and alignments):
>> fn3  Fibronectin type III domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.0   0.0   5.9e-12   1.3e-08       1      78 [.      17      96 ..      17      99 .. 0.90

  Alignments for each domain:
  == domain 1  score: 35.0 bits;  conditional E-value: 5.9e-12
                TCECEEEEEEESSSEEEEEEE-CS.SSSSTEEEEEEEEEETTSTS..TEEEEEECSTSSEEEEESSSTTEEEEEEEEEEET CS
         fn3  1 saPsnlsvsevtstsltvsWeppk.dgggpitgYeveyrekgsee..ewneftvprtttsvtltgLkpgteYevrVqavng 78
                s+P+ + + +  +t ++++W pp+ +gg+ i gY+v++r+ g++e  + +  t+++ +  v+  gL+p t+ e+rV+a+++
  KOO22932.1 17 SPPGAPIAVSMETTAANLKWAPPSySGGSAIIGYRVDVRTGGHGEfcVLVANTNDPEP-CVHADGLEPITWHEFRVAAITQ 96
                68999999999**********************************9755555555555.7******************986 PP

>> EF-hand_1  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.8   0.0       5.7   1.3e+04      17      24 ..      84      91 ..      84      92 .. 0.83
   2 !   28.2   0.1   3.4e-10   7.7e-07       2      25 ..     477     500 ..     476     504 .. 0.92
   3 ?    0.2   0.0       0.3   6.8e+02      12      27 ..     635     650 ..     634     651 .. 0.88

  Alignments for each domain:
  == domain 1  score: -3.8 bits;  conditional E-value: 5.7
                EEHHHHHH CS
   EF-hand_1 17 IdfeEfke 24
                I++ Ef+ 
  KOO22932.1 84 ITWHEFRV 91
                8999**86 PP

  == domain 2  score: 28.2 bits;  conditional E-value: 3.4e-10
                 HHHHHHHHTTTSSSEEEHHHHHHH CS
   EF-hand_1   2 lkeiFrefDkDgdGkIdfeEfkel 25 
                 ++++F+++D ++dG++df+Ef+++
  KOO22932.1 477 VRQMFAKADLNKDGFVDFNEFVAM 500
                 799*******************98 PP

  == domain 3  score: 0.2 bits;  conditional E-value: 0.3
                 TSSSEEEHHHHHHHHH CS
   EF-hand_1  12 DgdGkIdfeEfkellk 27 
                 Dg+G+I  e++++ l+
  KOO22932.1 635 DGSGRIAPEQLINGLR 650
                 9*****9999998875 PP

>> EF-hand_6  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.2   0.1   7.5e-07    0.0017       2      25 ..     477     500 ..     476     504 .. 0.92
   2 ?    2.0   0.0      0.11   2.5e+02      12      27 ..     635     650 ..     634     653 .. 0.93

  Alignments for each domain:
  == domain 1  score: 18.2 bits;  conditional E-value: 7.5e-07
   EF-hand_6   2 lreaFklfDkdgdGkidaeElrka 25 
                 +r+ F + D ++dG++d++E++++
  KOO22932.1 477 VRQMFAKADLNKDGFVDFNEFVAM 500
                 7999*****************986 PP

  == domain 2  score: 2.0 bits;  conditional E-value: 0.11
   EF-hand_6  12 dgdGkidaeElrkalr 27 
                 dg+G i +e+l++ lr
  KOO22932.1 635 DGSGRIAPEQLINGLR 650
                 9************998 PP

>> EF-hand_7  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.7   0.0   3.8e-07   0.00086      24      69 ..     455     500 ..     424     543 .. 0.77
   2 ?   -2.0   0.0       2.3   5.3e+03      35      54 ..     601     631 ..     578     645 .. 0.58

  Alignments for each domain:
  == domain 1  score: 19.7 bits;  conditional E-value: 3.8e-07
   EF-hand_7  24 llrllrkifqgagegsklsdeelellfkefDtdkdGvisfdEFlkl 69 
                 ++ +l  ++ +ag ++  + + ++++f + D++kdG ++f+EF+++
  KOO22932.1 455 FETALVGHSMAAGDAEAATVKRVRQMFAKADLNKDGFVDFNEFVAM 500
                 4444444333334444445555999999999999999999999875 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 2.3
   EF-hand_7  35 a..........gegsklsdeelellfkef.D 54 
                 a          + g+ +++ e++ +++e+  
  KOO22932.1 601 AcrvtlgmlamRVGKMFTPAEVDSFVNELvR 631
                 1555555555567777777777777777543 PP

>> EF-hand_5  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.9   0.1   7.7e-08   0.00017       2      22 ..     478     498 ..     477     503 .. 0.88
   2 ?   -2.8   0.4       2.5   5.6e+03      11      16 ..     635     640 ..     634     640 .. 0.88

  Alignments for each domain:
  == domain 1  score: 20.9 bits;  conditional E-value: 7.7e-08
                 HHHHHHH-SS-SSCE-HHHHH CS
   EF-hand_5   2 kdtFqaiDlNgDGkIskeELk 22 
                 +++F ++DlN+DG++++ E+ 
  KOO22932.1 478 RQMFAKADLNKDGFVDFNEFV 498
                 679*****************5 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 2.5
                 S-SSCE CS
   EF-hand_5  11 NgDGkI 16 
                 +g+G+I
  KOO22932.1 635 DGSGRI 640
                 999*98 PP

>> EF-hand_8  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.0   4.5e-06      0.01      26      51 ..     475     500 ..     449     502 .. 0.88
   2 ?   -3.1   0.0       3.3   7.5e+03      15      34 ..     612     628 ..     609     629 .. 0.72

  Alignments for each domain:
  == domain 1  score: 15.7 bits;  conditional E-value: 4.5e-06
   EF-hand_8  26 eevdilfrefDtdgdGkisfeEFcvl 51 
                 + v+ +f ++D+++dG ++f+EF+++
  KOO22932.1 475 KRVRQMFAKADLNKDGFVDFNEFVAM 500
                 55788******************987 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 3.3
   EF-hand_8  15 rilglkkglseeevdilfre 34 
                 r+ g+   +++ evd+ ++e
  KOO22932.1 612 RV-GKM--FTPAEVDSFVNE 628
                 44.655..999***998776 PP

>> SOAR  STIM1 Orai1-activating region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.6   1.7e-05     0.038      10      60 ..     273     324 ..     267     335 .. 0.86

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 1.7e-05
        SOAR  10 lLqlTyelEl.kylnkkkqeaekqlqeAkeeveklkkkrssllgslrlahss 60 
                 +L+  + +E    l++ +q a k+l++Ak ++ k +k r+  +g++ +   +
  KOO22932.1 273 VLRHAHAVESlAVLEADRQLALKELAVAKAAIAKWEKEREAAFGTVTSEDKK 324
                 68999999963789******************************99876555 PP

>> EF-hand_4  Cytoskeletal-regulatory complex EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.7   0.0       5.4   1.2e+04      47      68 ..     279     300 ..     257     304 .. 0.74
   2 ?   11.3   0.0   0.00011      0.24      44      72 ..     476     504 ..     450     519 .. 0.87

  Alignments for each domain:
  == domain 1  score: -3.7 bits;  conditional E-value: 5.4
   EF-hand_4  47 kiwdladidedgkldfeefcia 68 
                  + +la ++ d +l ++e+++a
  KOO22932.1 279 AVESLAVLEADRQLALKELAVA 300
                 4567888888999999988886 PP

  == domain 2  score: 11.3 bits;  conditional E-value: 0.00011
   EF-hand_4  44 klekiwdladidedgkldfeefciamrli 72 
                 ++ +++  ad+++dg +df+ef+ + rl+
  KOO22932.1 476 RVRQMFAKADLNKDGFVDFNEFVAMRRLT 504
                 56788999**************9877775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (657 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       725  (0.0404373); expected 358.6 (0.02)
Passed bias filter:                      430  (0.0239835); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.57u 0.26s 00:00:00.83 Elapsed: 00:00:00.40
# Mc/sec: 4879.51
//
Query:       KOO22933.1  [L=669]
Description: hypothetical protein Ctob_002573 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    5.6e-34  117.5   0.0    9.6e-34  116.7   0.0    1.3  1  ATP_bind_3    PP-loop family
    0.00046   19.7   0.0     0.0015   18.1   0.0    1.7  2  QueC          Queuosine biosynthesis protein QueC
  ------ inclusion threshold ------
       0.04   13.6   0.0      0.087   12.5   0.0    1.5  1  Asn_synthase  Asparagine synthase


Domain annotation for each model (and alignments):
>> ATP_bind_3  PP-loop family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  116.7   0.0   1.6e-37   9.6e-34       2     168 ..     195     366 ..     194     377 .. 0.95

  Alignments for each domain:
  == domain 1  score: 116.7 bits;  conditional E-value: 1.6e-37
                 EEEE--SCHHHHHHHHHHHHHCTTTTT..EEEEEEEE-SSSTCHHHHHHHHHHHHHHTT-EEEEEE--H...HHCTTSTCCCHHHHHHHHHHHHCHHCC CS
  ATP_bind_3   2 vlvAvSgGlDSmaLllllaklkkklgi..klvaihvdhglreeskeeaelvkelckklnikleiekvdv...akkkgknleeaARelRYevlkealkke 95 
                 ++v +SgG+DSm+L+++l  l+k  g+  ++ a+hvd+  r es +ea++v+++c++ ++++++ +v+    a+ + ++ e + R++R+++ k  l++ 
  KOO22933.1 195 LIVSLSGGVDSMVLTHVLLALRKAHGLrySVHAVHVDYANRVESGAEATFVETWCRERGVEIRVRTVSEmqrATCQRDEYERETRRIRFDAYKACLQAT 293
                 689******************999988889************************************9997766667999******************** PP

                 T.CEEE---BHHHHHHHHHHHHCCT--CCHHH-S-SEEEETTCCEE-CCCT--HHHHHHHHHHTT---B--CG CS
  ATP_bind_3  96 gievlllAhhadDqaEtfllrlargsglaglagikeaseiasirlvRPlLkvskeeleeylkekkikwveDes 168
                 g + +  +hh+ D  E++l ++++g++l ++agi++as++ ++ ++RP+L + k+ ++ey+++ ++++++D +
  KOO22933.1 294 GGRGVFFGHHEGDLHENVLCNVFKGAQLLNVAGIAAASTVGGVLIYRPMLPHPKSIIYEYAHKYGVPYFKDTT 366
                 ***********************************************************************98 PP

>> QueC  Queuosine biosynthesis protein QueC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.1   0.0   2.4e-07    0.0015       3      68 ..     196     265 ..     194     285 .. 0.71
   2 ?   -1.6   0.0      0.26   1.6e+03     148     178 ..     332     362 ..     288     367 .. 0.77

  Alignments for each domain:
  == domain 1  score: 18.1 bits;  conditional E-value: 2.4e-07
                 EEE--SSHHHHHHHHH....HHHH-..SEEEEEEEESS-T..TSHHHHHHHHHHHHT--.-EEEEE-GGGGGGS CS
        QueC   3 vvllSGGlDSttvlal....akkeg..kevealtfdYgqr..hkkeleaakkiakelgveehkildldllkelg 68 
                 +v lSGG+DS +++ +     k++g  + v+a+++dY +r    +e   +++ ++e gv e   + +++++e++
  KOO22933.1 196 IVSLSGGVDSMVLTHVllalRKAHGlrYSVHAVHVDYANRveSGAEATFVETWCRERGV-E---IRVRTVSEMQ 265
                 899*******8764331111334446699***********7555788999999999999.4...4444444444 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 0.26
                 HTS--EEE-TTTT--HHHHHHHHHHTTHHHH CS
        QueC 148 edkkieieaPlidlsKaeivklgkelgvple 178
                 +   + i  P++   K+ i + ++++gvp+ 
  KOO22933.1 332 TVGGVLIYRPMLPHPKSIIYEYAHKYGVPYF 362
                 566788999******************9875 PP

>> Asn_synthase  Asparagine synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   1.5e-05     0.087      22      74 ..     197     256 ..     189     273 .. 0.85

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 1.5e-05
  Asn_synthase  22 alLSGGlDSSliaalaarqsk.....splktFsigfee..kgsdeakyakevaehlgteh 74 
                   + LSGG+DS ++++++ + +k      +++++++++++  ++  ea + + ++++ g+e 
    KOO22933.1 197 VSLSGGVDSMVLTHVLLALRKahglrYSVHAVHVDYANrvESGAEATFVETWCRERGVEI 256
                   67**************999999999999********556799999999999999888874 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (669 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       557  (0.031067); expected 358.6 (0.02)
Passed bias filter:                      427  (0.0238162); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.56u 0.23s 00:00:00.79 Elapsed: 00:00:00.39
# Mc/sec: 5208.13
//
Query:       KOO22934.1  [L=162]
Description: hypothetical protein Ctob_007764 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (162 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       324  (0.0180713); expected 358.6 (0.02)
Passed bias filter:                      292  (0.0162865); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.41u 0.23s 00:00:00.64 Elapsed: 00:00:00.40
# Mc/sec: 1202.93
//
Query:       KOO22935.1  [L=653]
Description: hypothetical protein Ctob_007762 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    8.3e-21   74.8   0.0    9.9e-20   71.2   0.0    2.6  1  Methyltransf_28  Putative S-adenosyl-L-methionine-dependent m
  ------ inclusion threshold ------
       0.18   12.6   1.6        0.3   11.9   0.1    2.1  2  LCE6A            Late cornified envelope protein 6A family


Domain annotation for each model (and alignments):
>> Methyltransf_28  Putative S-adenosyl-L-methionine-dependent methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   71.2   0.0   1.1e-23   9.9e-20       1     258 [.      43     444 ..      43     447 .. 0.78

  Alignments for each domain:
  == domain 1  score: 71.2 bits;  conditional E-value: 1.1e-23
  Methyltransf_28   1 llaiwlleewqalgrps.kklrliElGpGkGtLmadvLrtlrkflpefyea.leyhlvEaSpqlrerQknrLkekakevkk............. 79 
                      +la  l++ w+a+g+p  +++ ++ElG+G+G L++d+L++ + +lp+++   l y++ E S +lr +Q+++ +   ++                
       KOO22935.1  43 MLADRLCSLWRAMGAPTdAPFLIVELGAGTGVLAHDILEHCEAQLPALFWDvLCYVIGERSGSLRVVQAKTNQHFVDAGRLyvvpadaqdlagc 136
                      6889999********99978***************************98888******************998765444448887777777776 PP

  Methyltransf_28  80 ..estvkslgvkveWleelkeip............eetgfilanEffDaLPihqfe...................................... 121
                        ++t ++++ +                         +g +++nE+ Da+ ++++                                       
       KOO22935.1 137 alRQTLQAVARQ----------RaaaagrtsaeppMLRGAVISNELPDAFGVEKVLvsargpsaappapptatpaaaasasvaapsggfgaaaq 220
                      663333333332..........0222333333345899******************99999999999999999999999999999999999999 PP

  Methyltransf_28 122 .............................rtedgwrellveltpe.................kkakekefrltl.spsetdplsevlpklskrl 168
                                                    t  +++ ++v+   +                  ++  ++  ++   ++ ++ l+ + p l ++l
       KOO22935.1 221 rlrlqrayvlplirldalrslveasdevlATALDLESVVVSSRAHrsallagersglwevgyANDVGTAASFSNaTAALDRWLRAHTPLLLSAL 314
                      9999999999998888888888887777744444444444444446666666666666665522333333444323444557999999999999 PP

  Methyltransf_28 169 kaleegsriei..speaeallediaerlakegGaaLiiDYgesssepngtLrai........................................ 220
                      ++ ++g+r+e+  sp++  l++ +a++l++   a+L+iDYg ++ +  +  r +                                        
       KOO22935.1 315 RHRPDGERMELypSPALPRLAQGLAALLDE--AAVLTIDYGADAATLINAARRVppavapadaakgrsaaaaalaaaaaarsasgmrvrsrlpa 406
                      999999999985578999************..**********8777555555556666777777777888888888999999999999999988 PP

  Methyltransf_28 221 .rkhklvdpleepGevDltadvDFtalaeaaeeasglev 258
                       r + +   l++pG +Dlt+dvDFt l  a+e+a gl++
       KOO22935.1 407 aRGQGAALALRRPGWCDLTTDVDFTELSAAGEAA-GLRT 444
                      77777778***********************555.7765 PP

>> LCE6A  Late cornified envelope protein 6A family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.1   3.3e-05       0.3      14      54 ..     187     227 ..     182     241 .. 0.90
   2 ?   -3.3   0.1       1.8   1.6e+04      19      48 ..     375     404 ..     365     413 .. 0.57

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 3.3e-05
       LCE6A  14 apkcspPkrknpslapcsapCgascsgGCsstsqrpraqkp 54 
                  p  +pP ++  ++a+ +++  a+ sgG   ++qr+r+q++
  KOO22935.1 187 GPSAAPPAPPTATPAAAASASVAAPSGGFGAAAQRLRLQRA 227
                 58899**********9999999999**************98 PP

  == domain 2  score: -3.3 bits;  conditional E-value: 1.8
       LCE6A  19 pPkrknpslapcsapCgascsgGCsstsqr 48 
                   k++  + a+ +a+  a  ++G    s+ 
  KOO22935.1 375 AAKGRSAAAAALAAAAAARSASGMRVRSRL 404
                 444555555666666666666666666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (653 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       612  (0.0341346); expected 358.6 (0.02)
Passed bias filter:                      352  (0.019633); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.57u 0.28s 00:00:00.85 Elapsed: 00:00:00.42
# Mc/sec: 4632.40
//
Query:       KOO22936.1  [L=934]
Description: phosphoglycolate phosphatase-like protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.1e-17   63.3   0.0    4.3e-17   62.3   0.0    1.5  1  Rsm22           Mitochondrial small ribosomal subunit Rsm22
    7.8e-17   61.1   0.0      2e-16   59.8   0.0    1.8  1  Hydrolase_like  HAD-hyrolase-like
    2.5e-08   33.9   0.0    5.5e-08   32.8   0.0    1.5  1  Hydrolase_6     Haloacid dehalogenase-like hydrolase
     0.0011   19.2   0.2     0.0041   17.4   0.1    2.0  2  Hydrolase       haloacid dehalogenase-like hydrolase
  ------ inclusion threshold ------
       0.28   11.3   0.0       0.49   10.5   0.0    1.3  1  HAD_2           Haloacid dehalogenase-like hydrolase


Domain annotation for each model (and alignments):
>> Rsm22  Mitochondrial small ribosomal subunit Rsm22
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.3   0.0   1.2e-20   4.3e-17       6     171 ..     405     595 ..     400     598 .. 0.84

  Alignments for each domain:
  == domain 1  score: 62.3 bits;  conditional E-value: 1.2e-20
       Rsm22   6 aYalarlpatyavlrrvLdelaervpdflPkslldvgegpgtalwaaselwe.el........eevlvidaseelleiskelaada.pelkeaalrrsv 94 
                  +a++rl  tya+  rvL+e++ rvpdf+P+s+ld+g+  g a wa++++w+ e         + ++ ++    l+  + el + a p+   +++r+++
  KOO22936.1 405 DFAAHRLDRTYAACFRVLHEINCRVPDFAPRSILDFGAYLGSASWATHAIWPpEElpergaaaRLYVAVEPNPRLRGAGAELSETAaPHGPPIQWRSEM 503
                 589************************************************86432222222245789999999*999999987651444555566655 PP

       Rsm22  95 irealeleea............dLviisyvLleledesreklvknlWakask..ilvivEeGtpaGfrrvleaReal..kaagfhivAPCPHe 171
                   + +el +             dLv++ y L +l  +  +  +  lWa+++   il +++    +  + v  aR+ +   a g++++AP PH 
  KOO22936.1 504 P-ASAELGPLsgsadvgdakafDLVVVPYSLSSLPAAGVTRALASLWARTAVggILAVIDSAGDSSVATVGRARAYFedEAPGARLLAPFPHR 595
                 4.66677666667889999*****************************99877799999*999**************98899**********6 PP

>> Hydrolase_like  HAD-hyrolase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.8   0.0   5.6e-20     2e-16       2      75 .]     190     265 ..     189     265 .. 0.94

  Alignments for each domain:
  == domain 1  score: 59.8 bits;  conditional E-value: 5.6e-20
                     .STTSSHHHHHHHHHH---GGGEEEEES-TTTHHHHHHHCT-EEEEESSSSS-TTTHHH..HHHHHT---SEEES- CS
  Hydrolase_like   2 lgKPepemydfalevlgsdpeevlmiGDrlatDiagAnnaGwksvLVltGvtrpedlee..pehkptyvaddlaea 75 
                     +gKP++ +       +g+ p+ +lm+GDr++tD+a++  +Gw+++LVl+G ++++d ++  ++++p+y ad++a++
      KOO22936.1 190 VGKPSRDLALLLSSLYGLSPDTTLMVGDRINTDVAFGLSVGWRTMLVLSGCHSRADIRRanAAERPDYCADTVADL 265
                     6*******************************************************99965568*********986 PP

>> Hydrolase_6  Haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.8   0.0   1.5e-11   5.5e-08      40     101 .]      34      97 ..      32      97 .. 0.93

  Alignments for each domain:
  == domain 1  score: 32.8 bits;  conditional E-value: 1.5e-11
                  -SS-HHHHHHHHHHTT--.--GGGEEEHHHHHHHHHHHH.SXXXEEEEESXHHHHHHHHHTTXE CS
  Hydrolase_6  40 sskseeeyakkleklgvd.iteeqvvtsataaaeylkkr.kadkkvlvigeeglreelkeagfk 101
                  +s+s+ ++a+kl+klgv+ +t+++ vtsa+aaa+yl+++  + k+ +v+g+ gl++el+  g++
   KOO22936.1  34 GSQSRASLAAKLTKLGVPgVTADDCVTSASAAAAYLATThPQVKRAYVVGQGGLLDELRLKGIE 97 
                  68899*************9******************9746789***************99985 PP

>> Hydrolase  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.4   0.1   1.2e-06    0.0041     118     207 ..     132     227 ..      36     230 .. 0.72
   2 ?   -1.9   0.0      0.98   3.5e+03      34     104 ..     637     739 ..     623     783 .. 0.52

  Alignments for each domain:
  == domain 1  score: 17.4 bits;  conditional E-value: 1.2e-06
                 HBHTTHHHHHHHHHHTTEEEEEEESSEHHHHHHHHHHTT....GGGE.SEEEEHHCES.STTTSHHHHHHHHHHHTSTGGGEEEEESSHH.HHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx....xxxx.xxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxx RF
   Hydrolase 118 kvkpeaaeavasLkaagievvlltgdnpetaeraanqlG....ddyf.daviasdiet.vakpspegkvaaireLqgkpeevamVGDgvn.Daaala 207
                   +  +a+a a+ ++     +++t+ + +++  +a+ +     +  f +   +++ ++ v+kps +  + +   ++ +p  ++mVGD++n D+a++ 
  KOO22936.1 132 LCYARLAKAAAYARDPQR-PFVATNPDANFPAGLADMVPaggcNVRFvAYAAEREPDVvVGKPSRDLALLLSSLYGLSPDTTLMVGDRINtDVAFGL 227
                 467777777777776644.8899999999999888884444886666588888888889**********************************9875 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 0.98
                 HHHHHHCHHHHHH.HHHHHHHHHHHHHHHHETTTE.....HHHHTHHHHHHHHHCHHHHHHHHHHHHHHCHHHHHH....................... CS
                 xxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxx.....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx....................... RF
   Hydrolase  34 letgsehpigkal.vaaakarsgaltgfatfigrg.....ayaigkpewltaldippdlgaaigsaqsqgrtvall....................... 103
                 le  + + +gk+  v+  ++r+g+ + +++          a ++++p ++t+l    +++ a  s+qs   t+  +                       
  KOO22936.1 637 LESTAAREHGKRTgVRNGNERKGNGDLNTQ----AalearARLRNEPGLVTEL--QRWWETAQRSLQSVSDTSRDVlsrdeylhlsrllskaltpkfdp 729
                 444456666666666666666555533333....0122235566666666666..66666666666665555554444455555555555555555555 PP

                 .........T CS
                 .........x RF
   Hydrolase 104 .........q 104
                          +
  KOO22936.1 730 seaqlaaeeD 739
                 5555544440 PP

>> HAD_2  Haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.0   0.00014      0.49     130     177 ..     187     235 ..     182     236 .. 0.89

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00014
       HAD_2 130 dvekkKPdpeviekaleklklkkeeviyvGDsp.tDieaakkagikvia 177
                 dv   KP+ ++ + +   ++l+++ +++vGD + tD+  +  +g +++ 
  KOO22936.1 187 DVVVGKPSRDLALLLSSLYGLSPDTTLMVGDRInTDVAFGLSVGWRTML 235
                 56667****************************9***999999988876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (934 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       387  (0.0215851); expected 358.6 (0.02)
Passed bias filter:                      292  (0.0162865); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.63u 0.29s 00:00:00.92 Elapsed: 00:00:00.46
# Mc/sec: 6095.06
//
Query:       KOO22937.1  [L=86]
Description: hypothetical protein Ctob_007760 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (86 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       881  (0.0491383); expected 358.6 (0.02)
Passed bias filter:                      285  (0.015896); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.26s 00:00:00.63 Elapsed: 00:00:00.41
# Mc/sec: 625.31
//
Query:       KOO22938.1  [L=476]
Description: regulator of chromosome condensation family protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.7e-53  179.0  15.5    3.4e-12   46.8   0.4    7.1  7  RCC1      Regulator of chromosome condensation (RCC1) repeat
    1.9e-15   56.2  38.7    1.2e-05   25.0   0.8    7.3  7  RCC1_2    Regulator of chromosome condensation (RCC1) repeat


Domain annotation for each model (and alignments):
>> RCC1  Regulator of chromosome condensation (RCC1) repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.5   0.0      0.23     2e+03      28      45 ..      21      38 ..      14      45 .. 0.75
   2 !   43.6   0.0   3.7e-15   3.3e-11       2      50 .]      49      99 ..      48      99 .. 0.95
   3 !   28.7   0.1   1.6e-10   1.5e-06       1      50 []     102     153 ..     102     153 .. 0.96
   4 !   46.4   0.7   5.1e-16   4.6e-12       1      50 []     156     219 ..     156     219 .. 0.87
   5 !   46.8   0.4   3.8e-16   3.4e-12       1      50 []     222     270 ..     222     270 .. 0.92
   6 !    6.9   0.0    0.0011        10      28      49 ..     307     328 ..     287     329 .. 0.74
   7 !   11.2   0.0     5e-05      0.44      12      49 ..     343     382 ..     331     383 .. 0.78

  Alignments for each domain:
  == domain 1  score: -0.5 bits;  conditional E-value: 0.23
                E-GGGTTS-EEEEEEETT CS
        RCC1 28 kveglsgnrvvkvacGdd 45
                +++g+ g r+v++a G+ 
  KOO22938.1 21 LLAGFGGARIVSIATGCT 38
                45777778******9975 PP

  == domain 2  score: 43.6 bits;  conditional E-value: 3.7e-15
                TEEEEEE--GGGTTSSSS-..--EEEEEE-GGGTTS-EEEEEEETTEEEEE CS
        RCC1  2 GrVysWGrndyGqLGlgtt..esvlvPtkveglsgnrvvkvacGddhtval 50
                G+ ++WGrnd+GqLGlg+     +l P +v++l+g++++ +a G  htv+l
  KOO22938.1 49 GEAFAWGRNDNGQLGLGDAsaAPRLAPERVALLKGTPISRAATGKAHTVFL 99
                889****************8888899***********************97 PP

  == domain 3  score: 28.7 bits;  conditional E-value: 1.6e-10
                 TTEEEEEE--GGGTTSSSS-..--EEEEEE-GGGTTS-EEEEEEETTEEEEE CS
        RCC1   1 dGrVysWGrndyGqLGlgtt..esvlvPtkveglsgnrvvkvacGddhtval 50 
                 +G+++++G   +G  G+g +  e+ ++Pt + ++sg r+v+va+G+++++a+
  KOO22938.1 102 EGELLACGACKQGAVGNGVKkaEQTPTPTPLVLPSGVRFVHVASGQNFNLAI 153
                 79***************99988888*************************97 PP

  == domain 4  score: 46.4 bits;  conditional E-value: 5.1e-16
                 TTEEEEEE--GGGTTSSSS-...--E............EEEEE-GGGTTS-EEEEEEETTEEEEE CS
        RCC1   1 dGrVysWGrndyGqLGlgtt...esv............lvPtkveglsgnrvvkvacGddhtval 50 
                 +G+V+sWG++++G LG+gt+   +              +vP++++ l g   v+vacG++h++a+
  KOO22938.1 156 EGDVWSWGWSEFGVLGHGTDgewN-TkegsvklsysaeTVPKRISALAGLGCVDVACGQHHCAAI 219
                 7*****************999862.335666777777788***********************98 PP

  == domain 5  score: 46.8 bits;  conditional E-value: 3.8e-16
                 TTEEEEEE--GGGTTSSSS---EEEEEE-GGGTTS.-EEEEEEETTEEEEE CS
        RCC1   1 dGrVysWGrndyGqLGlgttesvlvPtkveglsgn.rvvkvacGddhtval 50 
                 +G Vy+WG++ yG+LG+++++++++P+ ++ +    r+  v+cG+ ht+a+
  KOO22938.1 222 EGVVYTWGNGGYGRLGHKDQQDQWTPKSLRDS--CvRAREVSCGSAHTAAI 270
                 799***********************999664..25*************98 PP

  == domain 6  score: 6.9 bits;  conditional E-value: 0.0011
                 E-GGGTTS-EEEEEEETTEEEE CS
        RCC1  28 kveglsgnrvvkvacGddhtva 49 
                   e  +g  +++++cG++h+va
  KOO22938.1 307 PEEDMRGWSMKHMSCGASHNVA 328
                 444444448899********98 PP

  == domain 7  score: 11.2 bits;  conditional E-value: 5e-05
                 GGTTSSSS-..--EEEEEE-GGGTTS-EEEEEEETTEEEE CS
        RCC1  12 yGqLGlgtt..esvlvPtkveglsgnrvvkvacGddhtva 49 
                  G LG g++  +s+  P kv  l+g  v +++cG   +++
  KOO22938.1 343 SGELGFGSEgkKSSARPDKVLALEGAAVAQITCGLANSIL 382
                 699******7555566******************888765 PP

>> RCC1_2  Regulator of chromosome condensation (RCC1) repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.9   9.4e-07    0.0084       1      30 []      30      61 ..      30      61 .. 0.88
   2 !   10.8   0.1   3.6e-05      0.33       5      24 ..      90     109 ..      86     115 .. 0.90
   3 !   25.0   0.8   1.3e-09   1.2e-05       2      29 ..     141     168 ..     140     168 .. 0.95
   4 !   21.2   3.3     2e-08   0.00018       2      29 ..     207     234 ..     206     235 .. 0.96
   5 ?    2.7   0.1     0.013   1.1e+02       4      14 ..     260     270 ..     255     270 .. 0.87
   6 ?    1.0   2.4     0.045     4e+02       2      13 ..     317     328 ..     316     339 .. 0.73
   7 ?   -0.8   0.0      0.16   1.5e+03       1      16 [.     370     385 ..     370     387 .. 0.84

  Alignments for each domain:
  == domain 1  score: 15.9 bits;  conditional E-value: 9.4e-07
      RCC1_2  1 Vksvs..aGdyHscaLtedGeVlcWGsNsdGQ 30
                ++s++  + + H +a+ + Ge ++WG+N++GQ
  KOO22938.1 30 IVSIAtgCTSAHVIAIGAGGEAFAWGRNDNGQ 61
                67888555689********************9 PP

  == domain 2  score: 10.8 bits;  conditional E-value: 3.6e-05
      RCC1_2   5 saGdyHscaLtedGeVlcWG 24 
                 + G  H+++L+++Ge+l++G
  KOO22938.1  90 ATGKAHTVFLSTEGELLACG 109
                 67888**************9 PP

  == domain 3  score: 25.0 bits;  conditional E-value: 1.3e-09
      RCC1_2   2 ksvsaGdyHscaLtedGeVlcWGsNsdG 29 
                 ++v++G ++ +a++++G+V++WG+ ++G
  KOO22938.1 141 VHVASGQNFNLAIDAEGDVWSWGWSEFG 168
                 78**********************9998 PP

  == domain 4  score: 21.2 bits;  conditional E-value: 2e-08
      RCC1_2   2 ksvsaGdyHscaLtedGeVlcWGsNsdG 29 
                 ++v++G  H  a++++G V++WG+ ++G
  KOO22938.1 207 VDVACGQHHCAAIDREGVVYTWGNGGYG 234
                 89************************99 PP

  == domain 5  score: 2.7 bits;  conditional E-value: 0.013
      RCC1_2   4 vsaGdyHscaL 14 
                 vs+G+ H+ a+
  KOO22938.1 260 VSCGSAHTAAI 270
                 9*******986 PP

  == domain 6  score: 1.0 bits;  conditional E-value: 0.045
      RCC1_2   2 ksvsaGdyHsca 13 
                 k++s+G++H +a
  KOO22938.1 317 KHMSCGASHNVA 328
                 578******997 PP

  == domain 7  score: -0.8 bits;  conditional E-value: 0.16
      RCC1_2   1 VksvsaGdyHscaLte 16 
                 V+++ +G   s+ L+e
  KOO22938.1 370 VAQITCGLANSILLVE 385
                 7899999999988876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (476 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       589  (0.0328518); expected 358.6 (0.02)
Passed bias filter:                      334  (0.018629); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.51u 0.27s 00:00:00.78 Elapsed: 00:00:00.43
# Mc/sec: 3350.66
//
Query:       KOO22939.1  [L=278]
Description: hypothetical protein Ctob_007759 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.9e-12   47.3  18.8    3.1e-12   46.6  18.8    1.3  1  TauE           Sulfite exporter TauE/SafE
  ------ inclusion threshold ------
       0.11   12.6   0.3         17    5.6   0.0    2.6  2  Phenol_monoox  Phenol hydroxylase conserved region


Domain annotation for each model (and alignments):
>> TauE  Sulfite exporter TauE/SafE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.6  18.8   3.5e-16   3.1e-12       2     194 ..      40     273 ..      38     276 .. 0.80

  Alignments for each domain:
  == domain 1  score: 46.6 bits;  conditional E-value: 3.5e-16
        TauE   2 llagllaGfvagllGiGggliavPlLlll..lppavavatsllavvatslsgalahrrrgn........vdwrlllllllgsliGallGallllllpse 90 
                 l+  ++ G++ag+ G+Ggg + vP+Lll+  +   +av++s ++v+ +s++++l + + ++        +d+ + l+ll++ l+G  +G+ll   lp++
  KOO22939.1  40 LFSLFVCGVLAGASGLGGGGLNVPILLLVsnFLRSEAVPLSQVMVMGSSIAQTLVNMQGRHphstlramIDLDVPLMLLPAQLVGNAIGVLLTPTLPAT 138
                 6778999*********************66987889******************99773223344444489999999********************** PP

        TauE  91 llkllfgvlllllallmllrkkr.....................................srakgrerrptaillvliggl.vGllsGllGiGgGfllv 151
                  +++l +vll  +a  ++l+++                                      +r+       t++ + +  ++ vG+ls+++G        
  KOO22939.1 139 SVEILACVLLFCAATKTVLMAHMafkqestaptalqrqelllgsadhscaaangggggggKREG-LVGVLTPWTSYVYVLGgVGFLSAFTGRV------ 230
                 *****************997777788999***********999999999998888887653333.3333333333333334499999997766...... PP

        TauE 152 pllllllglplkkavatslllilvislagalgyalagavdwpl 194
                 ++l+l+ +l+   + a  l+++l +sl+ + + ++ + +dw++
  KOO22939.1 231 IALTLVSRLSHPSLLAFVLAAALYTSLVFLGIQISYAPIDWSF 273
                 5666667888888888888888888888777777777888865 PP

>> Phenol_monoox  Phenol hydroxylase conserved region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.6   0.0    0.0019        17      26      54 ..      74     102 ..      69     111 .. 0.89
   2 ?    4.1   0.2    0.0057        51      21      39 ..     147     165 ..     145     175 .. 0.87

  Alignments for each domain:
  == domain 1  score: 5.6 bits;  conditional E-value: 0.0019
  Phenol_monoox  26 pvalplppdmpFgalvekvlkpligahPd 54 
                      a+pl++ m  g  +++ l ++ g+hP 
     KOO22939.1  74 SEAVPLSQVMVMGSSIAQTLVNMQGRHPH 102
                    5689************************6 PP

  == domain 2  score: 4.1 bits;  conditional E-value: 0.0057
  Phenol_monoox  21 llFcapvalplppdmpFga 39 
                    llFca+    l ++m F++
     KOO22939.1 147 LLFCAATKTVLMAHMAFKQ 165
                    8****************87 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (278 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       469  (0.0261587); expected 358.6 (0.02)
Passed bias filter:                      227  (0.0126611); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.42u 0.26s 00:00:00.68 Elapsed: 00:00:00.41
# Mc/sec: 2044.37
//
Query:       KOO22940.1  [L=402]
Description: uroporphyrinogen decarboxylase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   1.4e-104  349.9   0.1   1.7e-104  349.7   0.1    1.1  1  URO-D     Uroporphyrinogen decarboxylase (URO-D)


Domain annotation for each model (and alignments):
>> URO-D  Uroporphyrinogen decarboxylase (URO-D)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  349.7   0.1  9.6e-109  1.7e-104       3     346 .]      61     401 ..      59     401 .. 0.98

  Alignments for each domain:
  == domain 1  score: 349.7 bits;  conditional E-value: 9.6e-109
                 --HHHHHHTT---SS--B--TT-SSTTSHHHHHHHTSSSHHHHHH-HHHHHHHHHHHHHHH--S-EE-S--TTGGGGGGT-EEEEETTTEEEEE--S-. CS
       URO-D   3 nerllralrgekvdrvPvwlmRqaGrylpeyraeragvsflelcknpelaaevtlqpvrrfglDaailfsdilveaealGlevefeegegPvvekpvrt 101
                  + llra+rge ++r+PvwlmRqaGry+  +r+  +++ f++  +++e a+e++lqp++ fg D +i+fsdil+++ a+G+e++ ++g+gPv+ +p+rt
  KOO22940.1  61 HDILLRAARGEVTERTPVWLMRQAGRYMRSFREFSTKIEFRKRSETAEIATELSLQPWKAFGTDGVIMFSDILTPLPAMGIEFDVVRGDGPVISSPLRT 159
                 5789*********************************************************************************************** PP

                 ...GGGS----GGG.G..HHHHHHHHHHHHH.--SS-EEEEEE-HHHHHHHHHCTT.-SS-HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHTT-S CS
       URO-D 102 aedveklevpddveegrlpyvleaikllkkelggevpligfvgaPftlasylveGg.skgfekllkllykdpeevhklldkltdvvieylkaqieagAd 199
                 ++dv+++++ +d + ++lp++ e++  l+ke +g ++l+gfvgaPftl +y veG+ +++  +++k++ + pe++h++ld ++d++  y+++qie gA+
  KOO22940.1 160 MADVRAMTPFQDPN-TKLPFIREILGSLRKETEGAATLLGFVGAPFTLVAYSVEGEaNRHCIHTKKMMTAAPEVLHAALDNVADAIGMYACHQIECGAQ 257
                 ***********997.88********************************************************************************** PP

                 EEEEEETTGGGS-HHHHHHHTHHHHHHHHHHHHH.H--S-EEEEESSHH.HHHHHHTTS--SEEE--TTS-HHHHHHSS....EEE--B-G.GGGGS-H CS
       URO-D 200 aiqifDswagllspedfeefvlpylkrivdevkaegpkvpvilfikgagaeiledlaelgadvlsldwtvdlkeaarevgdkvalqGnldPialLlgsp 298
                  iq f+swa +lsp++f  f+ py+ r+++ vka++p+vp+i++++g + ++le+ ++++ad++ ldw+vd++ a++ +g++  + Gn+dP ++L+gs+
  KOO22940.1 258 SIQFFESWAHHLSPAQFSIFARPYVDRAMAYVKARHPTVPLIYYANGGS-SYLERQRDMQADMIALDWAVDMRVARQILGAERKVSGNVDP-TILFGSE 354
                 ************************************************9.8*********************66666888***********.8****** PP

                 HHHHHHHHHHHT.T---SSSEEB-BSS---TTS-HHHHHHHHHHHHT- CS
       URO-D 299 eeiekevkeilekgaggkkgyilnlGhgippetppenvkalveavkey 346
                 ++i+++v + ++ +aggk+++il +Ghg++++tp++ v+a+v a+ke+
  KOO22940.1 355 AQIREAVITNIA-EAGGKGRHILGVGHGVLQGTPEASVAAFVRAAKEH 401
                 ************.69******************************985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (402 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       381  (0.0212505); expected 358.6 (0.02)
Passed bias filter:                      337  (0.0187964); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.23s 00:00:00.70 Elapsed: 00:00:00.39
# Mc/sec: 3064.57
//
Query:       KOO22941.1  [L=511]
Description: hypothetical protein Ctob_003514 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.087   13.1   0.0        4.3    7.7   0.0    2.3  2  C2        C2 domain


Domain annotation for each model (and alignments):
>> C2  C2 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.1   0.0    0.0062   1.1e+02       2      16 ..     181     195 ..     180     242 .. 0.77
   2 ?    7.7   0.0   0.00024       4.3      74     103 .]     255     283 ..     247     283 .. 0.86

  Alignments for each domain:
  == domain 1  score: 3.1 bits;  conditional E-value: 0.0062
                 EEEEEEEEEESSSSS CS
          C2   2 klevtvieAknLpnk 16 
                  le++v+eAk+Lp k
  KOO22941.1 181 MLELEVLEAKDLPSK 195
                 699**********99 PP

  == domain 2  score: 7.7 bits;  conditional E-value: 0.00024
                 SSSTEEEEEEEEEEGHHHHTTHHHHEEEEH CS
          C2  74 rlskddfiGkveiplstllsgeeaegwypl 103
                    + d +G+v++pls l sg +++ w+ l
  KOO22941.1 255 E-VGRDSVGRVTLPLSALVSGVQYDAWFAL 283
                 4.45667********************976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (511 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       684  (0.0381505); expected 358.6 (0.02)
Passed bias filter:                      369  (0.0205812); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.51u 0.24s 00:00:00.75 Elapsed: 00:00:00.38
# Mc/sec: 4068.88
//
Query:       KOO22942.1  [L=420]
Description: bnr asp-box repeat protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.5e-19   70.4   0.0    2.1e-19   69.9   0.0    1.1  1  BNR_2           BNR repeat-like domain
    4.4e-07   29.5   0.0    9.7e-06   25.1   0.0    2.1  2  BNR_3           BNR repeat-like domain
     0.0016   18.2  26.0       0.27   11.4   0.4    5.5  5  BNR             BNR/Asp-box repeat
      0.002   18.0   1.6       0.75   10.0   0.6    2.7  2  BNR_6           BNR-Asp box repeat
  ------ inclusion threshold ------
      0.046   12.5   0.4        8.1    5.1   0.0    3.1  4  Sortilin-Vps10  Sortilin, neurotensin receptor 3,
      0.052   12.8   0.0       0.19   10.9   0.0    1.9  2  DUF4185         Domain of unknown function (DUF4185)


Domain annotation for each model (and alignments):
>> BNR_2  BNR repeat-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.9   0.0   7.2e-23   2.1e-19       1     271 [.      97     371 ..      97     377 .. 0.82

  Alignments for each domain:
  == domain 1  score: 69.9 bits;  conditional E-value: 7.2e-23
                 XTEEEEEES....SSSGGGEEEEEEEEEETTEEE.EEEEEE-TTS-......BTTEEEEEEEEEEETTTE..EEEEEEEEETT--HHT----EEEESST CS
       BNR_2   1 gtLlaawfg....gsregapdvaiwvsvsdkgsneWsapqvvadreq...srearkklgNPvlfqdpsgt..liLfykvgvsvggwagskitrvtSkDd 90 
                 gtLla++++     s++ + + ++++s   +g+ +W+   v++d+        a+ +  NPv +  ++g+  ++L +    ++++    + ++++S Dd
  KOO22942.1  97 GTLLAFAEArltsCSDDTDHKLVLRRS--LDGGTTWGDLIVAVDGIVpceGCPASVSNANPVAVWLQGGRaaILLHFNTLNNPTQLVHGVAMQIWSFDD 193
                 79*******995556666666666666..99*************9988755566778899999998855433788888888888888888889****** PP

                 TSS----EHHHGGEEEEEE-SS--...EE--T--EEEEEE..SS--EEEEEEEESSTTSS-EE----S...SSEEEEEEEE.EEETT.EEEEEEEE... CS
       BNR_2  91 GktWsaprrlpkspflnisgpvknkp.iqladGrlilPsshelagkwrallelsddggktWkkgrvve...qisgeiqpsilvekdg.slvalaRs.rk 183
                 G tW+ +  l+  p  ni g++   + +q +dG+++   ++    + + +l++s+d g +W+ ++ v     + +e+  ++l+++++ ++ +++R+  +
  KOO22942.1 194 GLTWEGASVLTYPPVHNIGGLIGPSVgLQADDGTIFFSARQP---ERGTFLYWSSDFGASWRASELVPtdeFGLDECSIAWLRNSSDgEILMNCRTrLN 289
                 **********************887657888*******9977...579*****************9998885559*******987555********666 PP

                 .EEEEEEESSTTSS-EEE-EEEEE----.......---SEEEEE.EEE--SSEEEEEEESTT-GGG----EEEEEEE...EEEEEEEEE CS
       BNR_2 184 aaileseSedgGetWskveltslpnpnsgidavtlkdgrlllvy.NhesapRkpLtvalskdngkswkevltLekgpkseysYPsliqa 271
                 ++ l+++++d G    +v+   l++ n   +++++  g+++l + N + + R+ L +  s+d+gk+w ev   + g     +Y++li+ 
  KOO22942.1 290 ERALMTWTAD-GL-PGRVTYPGLTDENCQGSLLNAG-GAHFLSHiNSRWE-RAHLQIHRSTDGGKNWTEVRKVRRGA---AAYSQLIEL 371
                 799*******.55.2567777777777766777744.4555555155555.**************************...*****9976 PP

>> BNR_3  BNR repeat-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.1   0.0   3.2e-09   9.7e-06       8     196 ..      96     290 ..      88     300 .. 0.77
   2 ?    2.3   0.0     0.027        82      87     113 ..     337     363 ..     319     390 .. 0.70

  Alignments for each domain:
  == domain 1  score: 25.1 bits;  conditional E-value: 3.2e-09
       BNR_3   8 ngdvfAvaeaqckkkkdegetslalksstdkgkeweekeevlkkk....kkkkkvsvsrpttvv.kgsdiymlv..gkysekagaadaglllvksedgg 99 
                  g ++A+aea++++++d+++ +l+l++s d g++w +   +++         ++vs ++p++v  +g+   +l+   + ++ ++  +   + ++s d+g
  KOO22942.1  96 TGTLLAFAEARLTSCSDDTDHKLVLRRSLDGGTTWGDLIVAVDGIvpceGCPASVSNANPVAVWlQGGRAAILLhfNTLNNPTQLVHGVAMQIWSFDDG 194
                 6899********************************999777764444456667999999987525665555550044444333334344455799*** PP

       BNR_3 100 kkwkdteslpetllekeelliggGGsGvkmkDgtlvfPvegtkkkekktvsliiyssddtkswklskgmsd.....dgCsdpsvvewedgkLmmmtacd 193
                  +w+ ++ l+   +++   li g + G + +Dgt+ f   + +  ++   +++  ssd ++sw+ s+ ++      d Cs     +  dg+++m +++ 
  KOO22942.1 195 LTWEGASVLTYPPVHNIGGLI-GPSVGLQADDGTIFFSARQPE--RG---TFLYWSSDFGASWRASELVPTdefglDECSIAWLRNSSDGEILMNCRTR 287
                 *********9888778789**.999************877665..44...467889999*********9987777777887777788999999998876 PP

       BNR_3 194 dgr 196
                    
  KOO22942.1 288 LNE 290
                 655 PP

  == domain 2  score: 2.3 bits;  conditional E-value: 0.027
       BNR_3  87 daglllvksedggkkwkdteslpetll 113
                 +a+l + +s+dggk+w++++++ +  +
  KOO22942.1 337 RAHLQIHRSTDGGKNWTEVRKVRRGAA 363
                 455666678888888888887776663 PP

>> BNR  BNR/Asp-box repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.0   0.3    0.0025       7.3       2      10 ..     122     130 ..     121     130 .. 0.91
   2 !    8.2   0.7     0.001         3       2      11 ..     189     198 ..     188     198 .. 0.91
   3 !    8.4   0.6   0.00084       2.5       1      11 [.     242     252 ..     242     253 .. 0.92
   4 !   11.4   0.4     9e-05      0.27       2      11 ..     344     353 ..     343     354 .. 0.89
   5 ?   -3.0   0.7       4.9   1.5e+04       7      10 ..     388     391 ..     387     391 .. 0.88

  Alignments for each domain:
  == domain 1  score: 7.0 bits;  conditional E-value: 0.0025
                 EESSTTSS- CS
         BNR   2 yStDgGktW 10 
                  S DgG tW
  KOO22942.1 122 RSLDGGTTW 130
                 699****** PP

  == domain 2  score: 8.2 bits;  conditional E-value: 0.001
                 EESSTTSS-E CS
         BNR   2 yStDgGktWs 11 
                 +S+D G tW+
  KOO22942.1 189 WSFDDGLTWE 198
                 8********7 PP

  == domain 3  score: 8.4 bits;  conditional E-value: 0.00084
                 EEESSTTSS-E CS
         BNR   1 yyStDgGktWs 11 
                 y+S D+G +W 
  KOO22942.1 242 YWSSDFGASWR 252
                 89********7 PP

  == domain 4  score: 11.4 bits;  conditional E-value: 9e-05
                 EESSTTSS-E CS
         BNR   2 yStDgGktWs 11 
                  StDgGk+W+
  KOO22942.1 344 RSTDGGKNWT 353
                 6********8 PP

  == domain 5  score: -3.0 bits;  conditional E-value: 4.9
                 TSS- CS
         BNR   7 GktW 10 
                 G tW
  KOO22942.1 388 GGTW 391
                 99** PP

>> BNR_6  BNR-Asp box repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.0   0.6   0.00025      0.75       1      11 [.     241     251 ..     241     254 .. 0.91
   2 !    6.2   0.0    0.0043        13       1      14 []     342     355 ..     342     355 .. 0.86

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.00025
       BNR_6   1 LyrSeDfGknf 11 
                 Ly S+DfG+++
  KOO22942.1 241 LYWSSDFGASW 251
                 899******** PP

  == domain 2  score: 6.2 bits;  conditional E-value: 0.0043
       BNR_6   1 LyrSeDfGknfkqi 14 
                 + rS D Gkn++++
  KOO22942.1 342 IHRSTDGGKNWTEV 355
                 5699*******876 PP

>> Sortilin-Vps10  Sortilin, neurotensin receptor 3,
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.0      0.27     8e+02     422     433 ..     121     132 ..      93     146 .. 0.65
   2 ?   -1.1   0.1       0.2     6e+02     303     311 ..     190     198 ..     172     205 .. 0.78
   3 ?    2.5   0.0     0.017        51     403     436 ..     224     256 ..     214     266 .. 0.71
   4 ?    5.1   0.0    0.0027       8.1       3      22 ..     342     361 ..     339     370 .. 0.77

  Alignments for each domain:
  == domain 1  score: -1.5 bits;  conditional E-value: 0.27
                     EEESSTTSSEEE CS
  Sortilin-Vps10 422 sYSlDeGktWee 433
                     + SlD G tW +
      KOO22942.1 121 RRSLDGGTTWGD 132
                     334555555544 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 0.2
                     ESSTTS-EE CS
  Sortilin-Vps10 303 tfddGrtWe 311
                     +fddG tWe
      KOO22942.1 190 SFDDGLTWE 198
                     677777775 PP

  == domain 3  score: 2.5 bits;  conditional E-value: 0.017
                     GGGTEEEEEE-SSS-B-EEEEESSTTSSEEEEE- CS
  Sortilin-Vps10 403 DqGsiivavkdeeketkelsYSlDeGktWeeykf 436
                     D G+i    ++ e   + l++S D G +W+  ++
      KOO22942.1 224 DDGTIFFSARQPE-RGTFLYWSSDFGASWRASEL 256
                     6666666666664.66667777777777766554 PP

  == domain 4  score: 5.1 bits;  conditional E-value: 0.0027
                     EEEESSTTSS-EE-GGGGTT CS
  Sortilin-Vps10   3 vyiSeDeGktwkkvkeklkg 22 
                     +++S+D Gk+w++v ++ +g
      KOO22942.1 342 IHRSTDGGKNWTEVRKVRRG 361
                     78999999999999876555 PP

>> DUF4185  Domain of unknown function (DUF4185)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.0      0.83   2.5e+03     200     212 ..     241     254 ..     231     306 .. 0.59
   2 ?   10.9   0.0   6.3e-05      0.19     118     150 ..     330     363 ..     318     387 .. 0.82

  Alignments for each domain:
  == domain 1  score: -2.6 bits;  conditional E-value: 0.83
     DUF4185 200 eywkgggea.Wvka 212
                  yw+++  a W ++
  KOO22942.1 241 LYWSSDFGAsWRAS 254
                 44433332334444 PP

  == domain 2  score: 10.9 bits;  conditional E-value: 6.3e-05
     DUF4185 118 a.pgewttnysaiaksdDngetWekvpesvrtns 150
                 + +++w+  + +i +s+D+g++W++v++ +r ++
  KOO22942.1 330 HiNSRWERAHLQIHRSTDGGKNWTEVRKVRRGAA 363
                 4467899999****************98877655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (420 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       411  (0.0229238); expected 358.6 (0.02)
Passed bias filter:                      356  (0.0198561); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.46u 0.24s 00:00:00.70 Elapsed: 00:00:00.37
# Mc/sec: 3402.08
//
Query:       KOO22943.1  [L=268]
Description: serine threonine kinase, partial [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.6e-13   49.7   0.2    5.2e-13   49.1   0.2    1.1  1  Beta_helix  Right handed beta helix region
    2.1e-06   27.2   0.0    2.8e-06   26.8   0.0    1.2  1  NosD        Periplasmic copper-binding protein (NosD)
  ------ inclusion threshold ------
      0.033   13.5   0.0        1.7    7.9   0.1    2.2  2  DUF1565     Protein of unknown function (DUF1565)


Domain annotation for each model (and alignments):
>> Beta_helix  Right handed beta helix region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.1   0.2   8.7e-17   5.2e-13      14     142 ..     123     261 ..     111     265 .. 0.83

  Alignments for each domain:
  == domain 1  score: 49.1 bits;  conditional E-value: 8.7e-17
                 ESEEEES-.....SS-SEEE-SSS-........EEES-EEES-SS-SEEE-TT-S-EEES-EEE---.SEEE-TT--S--EEES-EEES-SS-SEE-TT CS
  Beta_helix  14 knntisns.....ggyGiylrgssn.......vvienneiannsgsGiyilgssnntisnntisdnn.gggialfgasnnlienneitdnggsGiylny 99 
                 ++  i++      ++y++++   s+       +++++++i+++sgsG++++g  ++ ++ ++++ +  +g i++  + + ++e++ +++++ +Gi l +
  KOO22943.1 123 SGLSINHHsrsvaQNYAVFVPVPSSaeadrvrILLKQCDITSSSGSGVGVEG-GDVSLEQCRVTACQnHGIIYVGSSARGVVEKSSVEKCKLNGILLRD 220
                 455554444444444444444444455666667999***************9.*************978888888************************ PP

                 -S--EEES-EEESTT--SEE---TT---EEES-EEES-SSEEE CS
  Beta_helix 100 ssnntienNiidnnagsGividdsssnvtvtnNtitnnkgaGi 142
                   +  ++ N++ +na++Gi + d     + ++N +++n++ G+
  KOO22943.1 221 GASPLLRSNRLAGNAQYGIALFDCR--GVLEGNDLSGNGKGGV 261
                 *************************..447********98887 PP

>> NosD  Periplasmic copper-binding protein (NosD)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.8   0.0   4.7e-10   2.8e-06      36     129 ..     164     259 ..     126     265 .. 0.73

  Alignments for each domain:
  == domain 1  score: 26.8 bits;  conditional E-value: 4.7e-10
        NosD  36 nsrdgilldnssnntitgntienl.ryGihlenses.ntiedntlssne.sGialmsssnntlenNtisnnenyGillsdssnntisnNtisnnnkG 129
                 +s+ +    +  ++++++++++ + ++Gi +++s+   ++e++ +++++ +Gi+l +     l+ N++ +n +yGi l d+++  +++N  s n+kG
  KOO22943.1 164 SSSGSGVGVEGGDVSLEQCRVTACqNHGIIYVGSSArGVVEKSSVEKCKlNGILLRDGASPLLRSNRLAGNAQYGIALFDCRGV-LEGNDLSGNGKG 259
                 444444455666777777777777777877777776677888888888888888888886688888888888888888888864.888888855444 PP

>> DUF1565  Protein of unknown function (DUF1565)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.9   0.1   0.00028       1.7      15      52 ..      52      89 ..      44     204 .. 0.69
   2 ?    4.1   0.0    0.0042        25      90     143 ..     188     242 ..     158     263 .. 0.69

  Alignments for each domain:
  == domain 1  score: 7.9 bits;  conditional E-value: 0.00028
     DUF1565 15 fktiTkAlllakageviqlapGtYseatgEtFPlvipe 52
                + ti  Al++a+ + ++ + pG Y e+   t P+ + +
  KOO22943.1 52 YSTISAALSVAPRDATVIVRPGMYTEQVIITRPVKLLA 89
                78************************998888887643 PP

  == domain 2  score: 4.1 bits;  conditional E-value: 0.0042
     DUF1565  90 qnvtivlaneatiaGvtitNp.nilkgtgvliesa.sakianNtitgniadGievs 143
                 qn  i+    ++ +Gv  +   ++ k  g+l+++  s+ +++N + gn + Gi   
  KOO22943.1 188 QNHGIIYVG-SSARGVVEKSSvEKCKLNGILLRDGaSPLLRSNRLAGNAQYGIALF 242
                 455554443.3446665554445688899999988799**************9764 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (268 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       351  (0.0195772); expected 358.6 (0.02)
Passed bias filter:                      319  (0.0177924); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.44u 0.25s 00:00:00.69 Elapsed: 00:00:00.41
# Mc/sec: 1960.47
//
Query:       KOO22944.1  [L=114]
Description: nudc domain-containing protein 2 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.1e-06   29.5   0.0    1.6e-06   29.0   0.0    1.3  1  CS        CS domain


Domain annotation for each model (and alignments):
>> CS  CS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.0   0.0     9e-11   1.6e-06       3      47 ..      19      63 ..      17      76 .. 0.90

  Alignments for each domain:
  == domain 1  score: 29.0 bits;  conditional E-value: 9e-11
                CEEEEETTEEEEEEE-TTCTTTTTCEEEEEETTEEEEEE.TSCEEE CS
          CS  3 ydWyQtldeVvvtiyvkkvnikkkdvkvefkerslkvki.gkekll 47
                y+W Qtl+e+ v i+v+  ++k+k +++++  ++l+v++ g+++++
  KOO22944.1 19 YEWEQTLEEIHVFIEVPP-GVKAKMLDIKIDAKRLRVGLrGNPPFI 63
                9*****************.9*******************7775554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (114 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       279  (0.0155614); expected 358.6 (0.02)
Passed bias filter:                      273  (0.0152267); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.21s 00:00:00.56 Elapsed: 00:00:00.37
# Mc/sec: 927.06
//
Query:       KOO22945.1  [L=474]
Description: Nucleotidyltransferase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    0.00035   20.7   0.0     0.0011   19.1   0.0    1.9  1  DNA_pol_B_thumb  DNA polymerase beta thumb


Domain annotation for each model (and alignments):
>> DNA_pol_B_thumb  DNA polymerase beta thumb
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.1   0.0     6e-08    0.0011       1      34 [.     376     417 ..     376     460 .. 0.60

  Alignments for each domain:
  == domain 1  score: 19.1 bits;  conditional E-value: 6e-08
                      HHHHHHS-HHHHHHHHHHHHCTTEEEETTEEE.......... CS
  DNA_pol_B_thumb   1 allyfTGsktFnrdlRrlakkkglkLnssglrd........e 34 
                      a l +TG  t nr +R++a + gl L  +            e
       KOO22945.1 376 ARLAWTGTRTLNRLMRLRAIDLGLYLGAHCFVArgdregttE 417
                      6799*************************9994333322221 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (474 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       333  (0.0185733); expected 358.6 (0.02)
Passed bias filter:                      305  (0.0170115); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.24s 00:00:00.72 Elapsed: 00:00:00.41
# Mc/sec: 3496.87
//
Query:       KOO22946.1  [L=1377]
Description: defective in exine formation protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    9.8e-78  261.4   0.0    1.4e-77  260.9   0.0    1.2  1  Kinesin          Kinesin motor domain
    7.2e-13   48.9   8.6    7.6e-05   23.2   0.8    5.8  6  VCBS             Repeat domain in Vibrio, Colwellia, Bradyrhi
    9.9e-11   41.8   0.0    1.7e-10   41.0   0.0    1.3  1  Microtub_bd      Microtubule binding
    1.9e-08   34.2   9.9    2.6e-06   27.2   4.2    3.1  4  PQQ_2            PQQ-like domain
    2.5e-08   33.9  19.0     0.0025   17.9   0.6    5.7  5  FG-GAP           FG-GAP repeat
    6.8e-05   22.6   0.1        1.6    8.8   0.1    5.3  7  PQQ              PQQ enzyme repeat
     0.0024   18.3  20.7         11    6.7   0.5    6.9  6  PQQ_3            PQQ-like domain
  ------ inclusion threshold ------
      0.063   12.6   5.6        6.7    6.0   0.0    4.0  4  TcdB_toxin_midN  Insecticide toxin TcdB middle/N-terminal reg
       0.65    9.7   4.4       0.16   11.7   0.8    1.8  2  AAA_30           AAA domain


Domain annotation for each model (and alignments):
>> Kinesin  Kinesin motor domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  260.9   0.0   7.1e-81   1.4e-77      26     329 ..     351     641 ..     315     644 .. 0.92

  Alignments for each domain:
  == domain 1  score: 260.9 bits;  conditional E-value: 7.1e-81
                 CEEEEEEEEECTTSCEEEEESEEEETTS-HHHHHHHHHHHHHHHHHTTSEEEEEEEESTTSSHHHHHTBC......TTTSBSHHHHHHHHHHHHHHHCT CS
     Kinesin  26 eeekkskkenkeeeekkfkFdkvfdeeatqeevyeetakplvesvleGynatifaYGqtgsGKTyTmegk......eeeeeGiipraleelFesikkek 118
                 +e k++ + +k+  +++f+Fd vf+e + ++++ + +++plv +v  G  at+fa+GqtgsGKT Tm g+      + +  G+++ a +++ +  +  +
  KOO22946.1 351 HEPKSRIDLTKAVDTHSFRFDGVFGEVDGNDRIHDAAVRPLVAHVAAGGVATVFAFGQTGSGKTCTMAGHglasamDGNALGLYALAAADVMNAASGAH 449
                 55666777888999************************************************************9988899***********9997744 PP

                 TTHEEEEEEEEEEEEEETTEEEETTSTTTTSTSSEBEEEECTTSCCEEETTS--E.EESSHHHHHHHHHHHHHHHTSTTSSCTSHHCCSEEEEEEEEEE CS
     Kinesin 119 eekekefsvkvsylEiYneeiyDLLeskkskkkkklkiredskkgevyvkgltev.evksaeevlellekgeknrkvaetklneeSSRSHavftitleq 216
                  +     sv++s++EiY  ++ DLL+++     ++ +++ed++ g++++ glte  ++ sa e+l+ ++ +++ r+v+ t++n++SSRSHa+++i l++
  KOO22946.1 450 -R-----SVSISFFEIYGGHVLDLLSQR-----ERCEVQEDAR-GQMVIVGLTELpNLGSAAELLHHVALAQRLRAVGCTSANSSSSRSHAILSIVLRE 536
                 .3.....7******************88.....3579*****9.5699****9984689***************************************9 PP

                 EETTTTTCEEEEEEEEEEEEEEECCCHHHHSSTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCCTSTSCGGGSHHHHHTGGGHSSSSEEEEEEEE-TBGG CS
     Kinesin 217 knlkeeteekvkisklnLvDLAGsErasktgaaegerlkEaaniNkSLlaLgrvisaLaekkkskhipYRdSkLTrlLqdsLgGnsktlmivtvspsse 315
                 +            +klnLvDLAGsEra++++++e++++ E+a+iNkSLl+L+++i+aL +   s h+p+R SkLT++L+ds+ G++ktlmi+tv p + 
  KOO22946.1 537 QPGG------PCLGKLNLVDLAGSERAADSTSKERQTRLEGAEINKSLLCLKECIRALDTG--SGHVPFRGSKLTMVLRDSFVGRAKTLMIATVAPGAA 627
                 9844......379******************99999*************************..************************************ PP

                 GHHHHHHHHHHHHH CS
     Kinesin 316 nleetlstlkfaer 329
                  +++tl+tl++a+r
  KOO22946.1 628 AADHTLNTLRYAQR 641
                 ************98 PP

>> VCBS  Repeat domain in Vibrio, Colwellia, Bradyrhizobium and Shewanella
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.3   0.0     0.015        31      30      60 ..     742     772 ..     733     787 .. 0.77
   2 !   11.3   0.2   0.00021      0.41      45      61 .]     897     913 ..     873     913 .. 0.84
   3 !   11.6   0.1   0.00016      0.32      40      61 .]     971     992 ..     950     992 .. 0.80
   4 !   23.2   0.8   3.8e-08   7.6e-05       1      60 [.     981    1038 ..     981    1039 .. 0.83
   5 !   13.3   0.1   4.6e-05     0.092       1      34 [.    1028    1061 ..    1028    1084 .. 0.77
   6 !    6.9   0.0    0.0049       9.8       1      29 [.    1189    1230 ..    1180    1256 .. 0.72

  Alignments for each domain:
  == domain 1  score: 5.3 bits;  conditional E-value: 0.015
        VCBS  30 tdvtktslggsgggtgvavgDlDgDGdlDll 60 
                 ++ +++++++s  +t++  +D+D DG  ++l
  KOO22946.1 742 RPGWPYAFASSTFHTSPLSFDVDADGINEML 772
                 5667788888888888888888888877765 PP

  == domain 2  score: 11.3 bits;  conditional E-value: 0.00021
        VCBS  45 gvavgDlDgDGdlDllv 61 
                 ++++ D+DgDG lDllv
  KOO22946.1 897 TPTLSDIDGDGALDLLV 913
                 6899***********98 PP

  == domain 3  score: 11.6 bits;  conditional E-value: 0.00016
        VCBS  40 sgggtgvavgDlDgDGdlDllv 61 
                 ++ +t v v+DlDgDG l+++v
  KOO22946.1 971 AYIYTPVSVADLDGDGTLEVAV 992
                 44567799***********987 PP

  == domain 4  score: 23.2 bits;  conditional E-value: 3.8e-08
        VCBS    1 DldgDGrlDlvvandgglrvyrnngdGtftdvtktslggsgggtgvavgDlDgDGdlDll 60  
                  DldgDG l++ v+++ g+   +  +dG+++d  ++ +++   +  v+++D+DgDG l+l+
  KOO22946.1  981 DLDGDGTLEVAVGTSMGFLYVLSAADGRLRDGFPVQMNEI--QGQVVPADVDGDGALELV 1038
                  9*************98888888889****98654444444..446*************98 PP

  == domain 5  score: 13.3 bits;  conditional E-value: 4.6e-05
        VCBS    1 DldgDGrlDlvvan.dgglrvyrnngdGtftdvtk 34  
                  D+dgDG l+lv+++  g++  +r++g+  ++ v++
  KOO22946.1 1028 DVDGDGALELVAVDaAGSVAAWRHDGSPLWE-VQA 1061
                  9************97899******9875443.443 PP

  == domain 6  score: 6.9 bits;  conditional E-value: 0.0049
        VCBS    1 DldgDGrlDlvvandgg.............lrvyrnngdGtf 29  
                  Dl g+G+lDl+v++++g             lr +r +++G+ 
  KOO22946.1 1189 DLTGNGMLDLLVSTMNGhlfcfetdtpwtpLRAWRSQAQGRN 1230
                  899999999999985553555555555666666666666654 PP

>> Microtub_bd  Microtubule binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.0   0.0   8.6e-14   1.7e-10      21     149 .]     309     468 ..     306     468 .. 0.77

  Alignments for each domain:
  == domain 1  score: 41.0 bits;  conditional E-value: 8.6e-14
                  B-EEEEEEECCCS-T.EEEETT..T.............................TTTEEEE-SEEEECTTHCCCCCC.CCHHHHHHHHTT--EEEEEE CS
  Microtub_bd  21 niRvfarvrpelesekakikfp..e..........................eekkkkkefsFdrvfeseseqeevfe.eisqlvqsaldgynvcifay 89 
                   iRv +r rp+l+ e++  +f+  +                          ++   +++f+Fd vf +   ++ +++  ++ lv  +  g   ++fa 
   KOO22946.1 309 AIRVCVRKRPMLKLERIGHDFDvvDlvpreatgsacsvalvvhepksridlTKAVDTHSFRFDGVFGEVDGNDRIHDaAVRPLVAHVAAGGVATVFAF 406
                  69999999999999885555553313344455566666777777888999988999*****************999725799**************** PP

                  ES................ST-HCHH..HHHHHHHHCCTSCCCCEEEEEEEEEEESS-EEETT CS
  Microtub_bd  90 gqTGsGKtyTmegeeeeagmiprav..eeifetiselkekgwkyeielqfveiynekvqDlL 149
                  gqTGsGKt Tm g+   + m  +a+   ++      +   g++ +++++f eiy  +v DlL
   KOO22946.1 407 GQTGSGKTCTMAGHGLASAMDGNALglYALAAADVMNAASGAHRSVSISFFEIYGGHVLDLL 468
                  *************66665555555411344433334445899******************98 PP

>> PQQ_2  PQQ-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.0       1.9   3.8e+03      58      82 ..     700     724 ..     687     741 .. 0.77
   2 !   20.0   0.3   2.1e-07   0.00043      27     155 ..     876    1020 ..     851    1032 .. 0.69
   3 !   27.2   4.2   1.3e-09   2.6e-06       5     145 ..     944    1102 ..     943    1111 .. 0.71
   4 ?   -3.5   0.0       3.2   6.4e+03     131     188 ..    1159    1210 ..    1147    1230 .. 0.50

  Alignments for each domain:
  == domain 1  score: -2.8 bits;  conditional E-value: 1.9
       PQQ_2  58 vlWettlegpvvgaplvaegrvvvv 82 
                 + W+t+l + v ++pl+  gr+v +
  KOO22946.1 700 LAWTTKLGASVYATPLLVPGRAVWA 724
                 7899999999999998888877544 PP

  == domain 2  score: 20.0 bits;  conditional E-value: 2.1e-07
       PQQ_2   27 ggvsravlsggtlfvat...gggrlvaldaatGkvlWettlegpvvga..plvaegrvvvva...sdgqlialdaedGkrlWstqqrse.epaelrs 114 
                  g + r + + g+l+v      +++l+ +d  +G++   ++++ ++ +a    +a+  v+ +      g ++ald ++G ++Ws++++ + e ++lr 
  KOO22946.1  876 GQTLRRLDESGYLYVDAhvlSTPTLSDID-GDGALDLLVAASYFIEAAsaARLARHGVIIERdkyVAGGVLALDPRTGAVKWSVHLDLTtELTKLRA 971 
                  55555666666666663333677777777.777777777777766666554444444455552444559*******************744444333 PP

       PQQ_2  115 saspava........gdtvvvgessgklvaldpkdGkvlWerelaaprg 155 
                       v+          +v+vg+s g l++l+++dG++++  ++ +++ 
  KOO22946.1  972 YIYTPVSvadldgdgTLEVAVGTSMGFLYVLSAADGRLRDGFPVQMNEI 1020
                  222222255678776679*********************9999888774 PP

  == domain 3  score: 27.2 bits;  conditional E-value: 1.3e-09
       PQQ_2    5 vsaldaatGaelWrv..dlar...p.......lgggvsravlsggtlfva..tgggrlvaldaatGkvlWettl.....egpvvgaplvaegrv... 79  
                  v ald++tGa+ W+v  dl++   +         +     + ++gtl va  t +g l+ l+aa+G+++  + +     +g+vv a  v+++ +   
  KOO22946.1  944 VLALDPRTGAVKWSVhlDLTTeltKlrayiytPVSVA--DLDGDGTLEVAvgTSMGFLYVLSAADGRLRDGFPVqmneiQGQVVPA-DVDGDGAlel 1037
                  459************7755443441444544323333..34445554444449*************99876666533335555555.6666655567 PP

       PQQ_2   80 vvvasdgqlialdaedGkrlWstqqrseepaelrssaspavagdtvvvgessgklvaldpkdGkvl 145 
                  v+v++ g+++a   +dG  lW++q +s + + +  ++ +  +  +vvv++s g ++++  ++G +l
  KOO22946.1 1038 VAVDAAGSVAAWR-HDGSPLWEVQASSLSVQGVTIVSLRDDGAVQVVVPTSAGVVHIFEGATGTEL 1102
                  8888999999999.********88888677765555555555889*****************9885 PP

  == domain 4  score: -3.5 bits;  conditional E-value: 3.2
       PQQ_2  131 sgklvaldpkdGkvlWerelaaprgtselsrvgdisgrpvvaegtVyassgqgrllal 188 
                  +g ++++++++G   +   l+++++t+ l   +d++g   ++   +++s+ +g l ++
  KOO22946.1 1159 DGHVYVVNARSGCY-DRLDLGEDSYTQVL--ADDLTGNGMLD---LLVSTMNGHLFCF 1210
                  44445555554443.44444444444433..23333333333...4444444444444 PP

>> FG-GAP  FG-GAP repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.3   0.0      0.41   8.2e+02       5      21 ..     758     774 ..     754     781 .. 0.74
   2 !   14.7   0.2   1.3e-05     0.026       4      24 ..     897     917 ..     895     926 .. 0.82
   3 !   17.9   0.6   1.3e-06    0.0025       3      24 ..     975     996 ..     973    1009 .. 0.79
   4 ?    4.7   2.0     0.017        34       5      20 ..    1024    1039 ..    1022    1047 .. 0.83
   5 ?    4.0   0.1     0.029        58       3      21 ..    1183    1201 ..    1181    1206 .. 0.84

  Alignments for each domain:
  == domain 1  score: 0.3 bits;  conditional E-value: 0.41
                 EEEESTSSSSS-EEEEE CS
      FG-GAP   5 lavgDvNGDGyaDLavG 21 
                     Dv+ DG  + ++ 
  KOO22946.1 758 PLSFDVDADGINEMLLI 774
                 5556******9887776 PP

  == domain 2  score: 14.7 bits;  conditional E-value: 1.3e-05
                 SEEEESTSSSSS-EEEEEETT CS
      FG-GAP   4 slavgDvNGDGyaDLavGApe 24 
                 + ++ D++GDG  DL+v+A++
  KOO22946.1 897 TPTLSDIDGDGALDLLVAASY 917
                 56789*************976 PP

  == domain 3  score: 17.9 bits;  conditional E-value: 1.3e-06
                 SSEEEESTSSSSS-EEEEEETT CS
      FG-GAP   3 yslavgDvNGDGyaDLavGApe 24 
                 + ++v+D++GDG  ++avG ++
  KOO22946.1 975 TPVSVADLDGDGTLEVAVGTSM 996
                 669****************644 PP

  == domain 4  score: 4.7 bits;  conditional E-value: 0.017
                  EEEESTSSSSS-EEEE CS
      FG-GAP    5 lavgDvNGDGyaDLav 20  
                  +  +Dv+GDG  +L+ 
  KOO22946.1 1024 VVPADVDGDGALELVA 1039
                  789*******888876 PP

  == domain 5  score: 4.0 bits;  conditional E-value: 0.029
                  SSEEEESTSSSSS-EEEEE CS
      FG-GAP    3 yslavgDvNGDGyaDLavG 21  
                  +++ + D+ G G  DL+v 
  KOO22946.1 1183 TQVLADDLTGNGMLDLLVS 1201
                  678888************8 PP

>> PQQ  PQQ enzyme repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.0       2.4   4.8e+03       9      21 ..     582     594 ..     578     595 .. 0.76
   2 ?   -2.5   0.0         3     6e+03      23      37 ..     701     715 ..     700     716 .. 0.87
   3 !    8.8   0.1   0.00078       1.6      10      27 ..     942     959 ..     937     963 .. 0.88
   4 ?    0.0   0.0      0.48   9.5e+02       5      23 ..     992    1010 ..     990    1018 .. 0.79
   5 ?   -2.9   0.0       4.1   8.1e+03      19      29 ..    1052    1062 ..    1052    1064 .. 0.85
   6 ?   -1.4   0.0       1.4   2.7e+03       3      23 ..    1082    1102 ..    1081    1102 .. 0.90
   7 !    5.4   0.0    0.0096        19       7      20 ..    1157    1170 ..    1152    1170 .. 0.88

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 2.4
                 TSEEEEEETTTCC CS
         PQQ   9 dGylyAlDadTGk 21 
                   +++AlD  +G 
  KOO22946.1 582 KECIRALDTGSGH 594
                 5689****88886 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 3
                 EEEEESSSCGSSESE CS
         PQQ  23 lWrfktggpvlslpi 37 
                  W++k+g+ v+++p+
  KOO22946.1 701 AWTTKLGASVYATPL 715
                 6*********99996 PP

  == domain 3  score: 8.8 bits;  conditional E-value: 0.00078
                 SEEEEEETTTCCEEEEEE CS
         PQQ  10 GylyAlDadTGkvlWrfk 27 
                 G ++AlD +TG v+W++ 
  KOO22946.1 942 GGVLALDPRTGAVKWSVH 959
                 89*************986 PP

  == domain 4  score: 0.0 bits;  conditional E-value: 0.48
                  EEETTSEEEEEETTTCCEE CS
         PQQ    5 lgsadGylyAlDadTGkvl 23  
                  +g+  G ly l a++G+++
  KOO22946.1  992 VGTSMGFLYVLSAADGRLR 1010
                  6677799*********986 PP

  == domain 5  score: -2.9 bits;  conditional E-value: 4.1
                  TCCEEEEEESS CS
         PQQ   19 TGkvlWrfktg 29  
                  +G  lW+++++
  KOO22946.1 1052 DGSPLWEVQAS 1062
                  7999***9987 PP

  == domain 6  score: -1.4 bits;  conditional E-value: 1.4
                  EEEEETTSEEEEEETTTCCEE CS
         PQQ    3 vylgsadGylyAlDadTGkvl 23  
                  v++++  G++  +  +TG++l
  KOO22946.1 1082 VVVPTSAGVVHIFEGATGTEL 1102
                  78899*************986 PP

  == domain 7  score: 5.4 bits;  conditional E-value: 0.0096
                  ETTSEEEEEETTTC CS
         PQQ    7 sadGylyAlDadTG 20  
                  s+dG++y ++a++G
  KOO22946.1 1157 SFDGHVYVVNARSG 1170
                  89**********98 PP

>> PQQ_3  PQQ-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.2   0.6     0.016        32       3      28 ..     700     726 ..     699     739 .. 0.75
   2 ?    0.3   0.1      0.57   1.1e+03      30      40 .]     941     951 ..     891     951 .. 0.69
   3 !    6.7   0.5    0.0054        11       1      40 []     952    1006 ..     952    1006 .. 0.84
   4 ?    2.9   0.2     0.086   1.7e+02       1      36 [.    1053    1094 ..    1053    1098 .. 0.75
   5 !    5.9   0.0    0.0098        20      17      40 .]    1136    1169 ..    1112    1169 .. 0.65
   6 !    6.5   0.0     0.006        12       9      40 .]    1177    1214 ..    1174    1214 .. 0.68

  Alignments for each domain:
  == domain 1  score: 5.2 bits;  conditional E-value: 0.016
       PQQ_3   3 vlWsvqlpgpvnssp.avdgglvyvgt 28 
                 + W+++l++ v+++p +v g+ v ++t
  KOO22946.1 700 LAWTTKLGASVYATPlLVPGRAVWAST 726
                 57**********999544466676666 PP

  == domain 2  score: 0.3 bits;  conditional E-value: 0.57
       PQQ_3  30 dGtlyAlDaet 40 
                  G++ AlD++t
  KOO22946.1 941 AGGVLALDPRT 951
                 699******98 PP

  == domain 3  score: 6.7 bits;  conditional E-value: 0.0054
       PQQ_3    1 GevlWsv.........qlpgpvnsspavd....ggl..vyvgtgdGtlyAlDaet 40  
                  G v+Wsv         +l +++++++ v+    +g+  v vgt+ G ly l a++
  KOO22946.1  952 GAVKWSVhldltteltKLRAYIYTPVSVAdldgDGTleVAVGTSMGFLYVLSAAD 1006
                  8899***99999988888899999887765655677889999999******9976 PP

  == domain 4  score: 2.9 bits;  conditional E-value: 0.086
       PQQ_3    1 GevlWsvqlpg.pvnssp...avdggl..vyvgtgdGtlyAl 36  
                  G +lW+vq  +  v++ +   + d+g   v+v t+ G ++ +
  KOO22946.1 1053 GSPLWEVQASSlSVQGVTivsLRDDGAvqVVVPTSAGVVHIF 1094
                  789********8777766665557885569999989988766 PP

  == domain 5  score: 5.9 bits;  conditional E-value: 0.0098
       PQQ_3   17 p.....avdgg.....lvyvgtgdGtlyAlDaet 40  
                  p     a +gg     ++++++ dG++y ++a++
  KOO22946.1 1136 PllgrgAGVGGadselHLVFSSFDGHVYVVNARS 1169
                  155555445554555579999***********96 PP

  == domain 6  score: 6.5 bits;  conditional E-value: 0.006
       PQQ_3    9 lpgpvnsspavdggl.......vyvgtgdGtlyAlDaet 40  
                  l+++ ++++++d+ l       + v+t++G+l++++++t
  KOO22946.1 1177 LGEDSYTQVLADD-LtgngmldLLVSTMNGHLFCFETDT 1214
                  5666666664443.2233457899***********9987 PP

>> TcdB_toxin_midN  Insecticide toxin TcdB middle/N-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.0   0.0    0.0034       6.7      32      61 ..     899     926 ..     891     952 .. 0.73
   2 ?    3.9   0.1     0.015        30      29      52 ..     975     997 ..     963    1012 .. 0.79
   3 ?    1.6   0.1     0.079   1.6e+02      29      47 ..    1022    1040 ..    1002    1064 .. 0.69
   4 ?    0.1   0.1      0.22   4.3e+02      27      47 ..    1181    1201 ..    1174    1217 .. 0.81

  Alignments for each domain:
  == domain 1  score: 6.0 bits;  conditional E-value: 0.0034
  TcdB_toxin_midN  32 slaDldGdGladlvltipsagtgavqkats 61 
                      +l D+dGdG +dl+++ ++    ++  a +
       KOO22946.1 899 TLSDIDGDGALDLLVAASYFI--EAASAAR 926
                      689*********999999876..3334444 PP

  == domain 2  score: 3.9 bits;  conditional E-value: 0.015
  TcdB_toxin_midN  29 tnlslaDldGdGladlvltipsag 52 
                      t +s+aDldGdG+++ v  + s+g
       KOO22946.1 975 TPVSVADLDGDGTLE-VAVGTSMG 997
                      5689**********9.55555555 PP

  == domain 3  score: 1.6 bits;  conditional E-value: 0.079
  TcdB_toxin_midN   29 tnlslaDldGdGladlvlt 47  
                        ++  aD+dGdG ++lv  
       KOO22946.1 1022 GQVVPADVDGDGALELVAV 1040
                       356679*********8754 PP

  == domain 4  score: 0.1 bits;  conditional E-value: 0.22
  TcdB_toxin_midN   27 edtnlslaDldGdGladlvlt 47  
                       + t++ + Dl G+G++dl++ 
       KOO22946.1 1181 SYTQVLADDLTGNGMLDLLVS 1201
                       66899999*********7654 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.8   8.1e-05      0.16       9     123 ..     391     515 ..     387     568 .. 0.75
   2 ?   -3.5   0.2       3.5     7e+03      31      47 ..     615     639 ..     610     688 .. 0.47

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 8.1e-05
      AAA_30   9 avealltsgdrvavltGpAGtGKttalkalreaweaaggrviglAptgkaAkvLaeelgieastiakllkrlk.............grarlepgtlliv 94 
                 +v++++++g  ++++ G  G+GKt ++++   a + +g  + ++A   +aA+v+++++g++ s   ++ + ++             + ++ ++g+++iv
  KOO22946.1 391 LVAHVAAGGVATVFAFGQTGSGKTCTMAGHGLASAMDGNALGLYAL--AAADVMNAASGAHRSVSISFFEIYGghvldllsqrercEVQEDARGQMVIV 487
                 688999999999****************998888888877777775..467777776665333333333233334444444444774334455699999 PP

      AAA_30  95 DEagmvdtkqlaallkaaekagakvilvG 123
                   + + +  ++a+ll +++    +++ vG
  KOO22946.1 488 GLTELPNLGSAAELLHHVAL-AQRLRAVG 515
                 88888888888888888877.66777777 PP

  == domain 2  score: -3.5 bits;  conditional E-value: 3.5
      AAA_30  31 Kttalkalreaweaag........g 47 
                 Kt ++++++  ++aa          
  KOO22946.1 615 KTLMIATVAPGAAAADhtlntlryA 639
                 5555555544444443222222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1377 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       339  (0.0189079); expected 358.6 (0.02)
Passed bias filter:                      273  (0.0152267); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.82u 0.28s 00:00:01.10 Elapsed: 00:00:00.47
# Mc/sec: 8732.23
//
Query:       KOO22947.1  [L=1034]
Description: ATP-dependent DNA helicase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.3e-67  228.5   0.0    1.9e-67  228.0   0.0    1.2  1  UvrD-helicase    UvrD/REP helicase N-terminal domain
    1.7e-41  142.7   0.0    1.8e-27   96.6   0.0    3.1  3  UvrD_C           UvrD-like helicase C-terminal domain
    1.8e-34  119.1   0.1    5.5e-34  117.6   0.1    1.9  1  AAA_19           AAA domain
    1.2e-16   59.9   0.1    2.2e-16   59.0   0.1    1.4  1  SRF-TF           SRF-type transcription factor (DNA-binding a
    3.9e-11   42.6   0.2      2e-10   40.3   0.2    2.2  1  UvrD_C_2         UvrD-like helicase C-terminal domain
    5.5e-05   23.0   4.9    0.00015   21.5   0.0    2.9  3  AAA_30           AAA domain
     0.0002   21.0   0.0    0.00075   19.2   0.0    1.9  2  AAA_12           AAA domain
    0.00056   19.7   0.3      0.028   14.1   0.0    2.8  3  Viral_helicase1  Viral (Superfamily 1) RNA helicase
     0.0012   18.7   0.1     0.0024   17.7   0.1    1.5  1  AAA_11           AAA domain


Domain annotation for each model (and alignments):
>> UvrD-helicase  UvrD/REP helicase N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  228.0   0.0   9.6e-71   1.9e-67       1     314 [.      37     325 ..      37     326 .. 0.91

  Alignments for each domain:
  == domain 1  score: 228.0 bits;  conditional E-value: 9.6e-71
                    SSHHHHHHHHS-SSEEEEEE-TTSSHHHHHHHHHHHHHHTSSSTGGGEEEEESSHHHHHHHHHHHHHHHHHCCHHCTT-HHHHHHHHHCTTSEEEE CS
  UvrD-helicase   1 lnpeqreaiaslggpilveAsAGsGKTfvlaerilrlikeeeiepdrilvvTFTnkAaeElkeRieealkkaeqessdderlrlalqnlseanisT 96 
                    +n++q +a++++ gp+ v+A++G+GKT+vl++ri++l++e  ++p+r+l+vTFTnkAa+El+eR++++++                  ++ ++++T
     KOO22947.1  37 MNQQQLAAVVCTDGPVRVAAGPGTGKTRVLTARIAHLVREVAVSPRRLLAVTFTNKAARELRERVTALIGPGD---------------ADAITMGT 117
                    799****************************************************************999764...............9******* PP

                    HHHHHHHHHHHHHGGTT....SHTTTEEECHHHHHHCCHHHHHHHHHSCHSHTTTTHHHHHHHHHHHHHHCCCCCHHHHCCCHHHHHCHHHHHHHH CS
  UvrD-helicase  97 lHsfcqkilkkeanrig....ldpnfrildeedeedlkqqellkelleksaddslnldkkkleklikelsksrnikkeelslskskaeelrelvsk 188
                    +Hs+c+ +l+ + +r+     ++++f+++de++     +++l++++  + +  + + ++k++++++                ++ +a+ ++ ++s 
     KOO22947.1 118 FHSLCLAMLRSDVERLPeelgYRRGFTVYDEDS-----SLKLMQKIKSRVEGGKATGAAKQTSEQA--------------AKEEFSAGAVQSIISA 194
                    ************999888888************.....5666666655533444444444444342..............34577899******** PP

                    HHHTTCCTTHHCHSS.....TSCSHHHHHHHHHHHHHHHHHHHHTCEEHHHHHHHHHHHHHHCHHHHHHHHHHSSEEEESSGGG-BHHHHHHHHHH CS
  UvrD-helicase 189 akekqlspkelkkaf.....ekasdlqkkiaeflkeyqeqkkeenalDfsdllhallelleeneelaealrerykeiliDEyQDTnkiQyrilkll 279
                    ak++  ++ +  +++        +++   +  ++ ey+ ++++en++Df+d+l+ +++ll+  e  + ++++++++i +DE+QDTn  Qy++++ll
     KOO22947.1 195 AKNDGYDAATFRAQPprrlaAMPTEQLALVGRVFTEYEATMRAENTVDFDDMLILATTLLRTSERTRLKYSRHWQHICVDEFQDTNGLQYQVVSLL 290
                    *********9999889999888999999******************************************************************** PP

                    HTTTTTEEEEE-GGG--GGGGTB-THHHHHHHHHS CS
  UvrD-helicase 280 asgheelfmvGDpkQsIYgFRgAdielflkkkkdf 314
                     ++h+++f+vGD +Q+IYg+RgAdi++  +++++f
     KOO22947.1 291 GRDHKNVFVVGDADQAIYGWRGADIRNQARFDSEF 325
                    **************************999888776 PP

>> UvrD_C  UvrD-like helicase C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.4   0.1    0.0012       2.5       2      26 ..     372     396 ..     371     414 .. 0.82
   2 !   34.9   0.0   5.5e-12   1.1e-08      96     162 ..     437     502 ..     423     513 .. 0.88
   3 !   96.6   0.0   9.1e-31   1.8e-27     233     346 ..     712     825 ..     650     827 .. 0.82

  Alignments for each domain:
  == domain 1  score: 7.4 bits;  conditional E-value: 0.0012
                 xxxxxxxxxxxxxxxxxxxxxxxxx RF
      UvrD_C   2 vLekNyRStksLlkaankfleniln 26 
                 +Le NyRS + +l++a ++l+  + 
  KOO22947.1 372 NLELNYRSRQAILDVAHSLLAPSYA 396
                 699**************99965554 PP

  == domain 2  score: 34.9 bits;  conditional E-value: 5.5e-12
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
      UvrD_C  96 gipfnvvdeekfFkreeikdilaylkllankqdkialkrilkrlvlgigkatveriseelkklglsl 162
                 ++p+++  +++f+ r+e++d+l yl+ll+++ d+i+l+ri++ ++++ig +t++++ e  +++  sl
  KOO22947.1 437 RVPYVLAAQRSFYARKEVRDALSYLRLLRSN-DTISLERIINVPPRKIGATTLATLHEAANQRQASL 502
                 689************************9877.************************77777766555 PP

  == domain 3  score: 96.6 bits;  conditional E-value: 9.1e-31
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxx RF
      UvrD_C 233 kkeeklenlreLysllkelekkeeeeeveeklneileiatLseseleeskkkekipiiTiHqAKGlEFdvVflagleegtfPsyrskk.ekrleEEkRl 330
                 +++++++nl eL +l++e    e + e  ++++ +    +L +   + +++ + ++++TiH+AKGlEFd Vflag+eeg +P+++s++ ++++eEE+Rl
  KOO22947.1 712 TESSRWRNLGELANLARERHVSELD-EFLDQIALVSDVDALDAHGTQIVRDRSIVQLSTIHAAKGLEFDAVFLAGVEEGLLPHFYSSNsLDEVEEERRL 809
                 3334999999999999999884444.444546666666688888888888889******************************99877799******** PP

                 xxxxxxxxxxxxxxxx RF
      UvrD_C 331 fYVaiTRAkkrLfisy 346
                 +YVa+TRAk+ L+++ 
  KOO22947.1 810 MYVAMTRAKQHLVVTH 825
                 *************985 PP

>> AAA_19  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  117.6   0.1   2.7e-37   5.5e-34       1     144 [.      41     309 ..      39     311 .. 0.95

  Alignments for each domain:
  == domain 1  score: 117.6 bits;  conditional E-value: 2.7e-37
      AAA_19   1 qreavealkekvllvtaGpGtGKTrvlkhivallvelggvkpeeillvaftgrAakelrerlaalgae.......atTiHrlal............... 77 
                 q +av  ++++++ v aGpGtGKTrvl++++a+lv++  v+p+++l+v+ft++Aa+elrer++al ++         T+H+l l               
  KOO22947.1  41 QLAAV-VCTDGPVRVAAGPGTGKTRVLTARIAHLVREVAVSPRRLLAVTFTNKAARELRERVTALIGPgdadaitMGTFHSLCLamlrsdverlpeelg 138
                 34455.9999*******************************************************999****99999***998899************* PP

      AAA_19  78 ................................................................................................... 77 
                                                                                                                    
  KOO22947.1 139 yrrgftvydedsslklmqkiksrveggkatgaakqtseqaakeefsagavqsiisaakndgydaatfraqpprrlaampteqlalvgrvfteyeatmra 237
                 *************************************************************************************************** PP

      AAA_19  78 ...ldfddlltealelle.eaeeekklqeee.llivDEfqdvdelqyrLlkallgekkklllvGDpdQliyv 144
                    +dfdd l  a +ll+ +++++ k  +++ ++ vDEfqd++ lqy++++ l  ++k++++vGD+dQ+iy 
  KOO22947.1 238 entVDFDDMLILATTLLRtSERTRLKYSRHWqHICVDEFQDTNGLQYQVVSLLGRDHKNVFVVGDADQAIYG 309
                 ******************63344445668899**********************88899***********96 PP

>> SRF-TF  SRF-type transcription factor (DNA-binding and dimerisation domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.0   0.1   1.1e-19   2.2e-16       2      48 .]     853     899 ..     852     899 .. 0.98

  Alignments for each domain:
  == domain 1  score: 59.0 bits;  conditional E-value: 1.1e-19
      SRF-TF   2 IeneraRqvtFsKRrnGLfKKAsELsvLcgvevavvvfspngklytf 48 
                 I ++ +R++tFsKR++G+ KKA+ELs L+g++v +++ s+ g++y+f
  KOO22947.1 853 IDDKIRRHITFSKRKAGISKKAYELSRLTGAQVLLLISSERGQIYSF 899
                 99********************************************9 PP

>> UvrD_C_2  UvrD-like helicase C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.3   0.2     1e-13     2e-10       5      51 ..     768     823 ..     765     824 .. 0.85

  Alignments for each domain:
  == domain 1  score: 40.3 bits;  conditional E-value: 1e-13
    UvrD_C_2   5 ltihkaQGsefpaVivfdpdlaaarmgel.........rrrlLYtavTRAreklil 51 
                 +tih a+G+ef+aV+++ +++   +++            rrl Y+a+TRA+++l++
  KOO22947.1 768 STIHAAKGLEFDAVFLAGVEEGLLPHFYSsnsldeveeERRLMYVAMTRAKQHLVV 823
                 8***************9988665555544667889999****************98 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.5   0.0   7.6e-08   0.00015       3      67 ..      38     102 ..      36     156 .. 0.76
   2 ?    2.8   0.1     0.041        83      81     127 ..     254     305 ..     165     307 .. 0.77
   3 ?   -2.6   0.3       1.8   3.7e+03      47      64 ..     524     542 ..     485     557 .. 0.64

  Alignments for each domain:
  == domain 1  score: 21.5 bits;  conditional E-value: 7.6e-08
      AAA_30   3 naeQaaavealltsgdrvavltGpAGtGKttalkalreaweaa.g...grviglAptgkaAkvLaeelg 67 
                 n++Q aav  ++t+g   + + +++GtGKt +l+a  +++ ++     +r+++++ t+kaA++L+e + 
  KOO22947.1  38 NQQQLAAV--VCTDGP--VRVAAGPGTGKTRVLTARIAHLVREvAvspRRLLAVTFTNKAARELRERVT 102
                 44555555..999995..6667789********987555555535788*****************9765 PP

  == domain 2  score: 2.8 bits;  conditional E-value: 0.041
      AAA_30  81 k.....grarlepg.tllivDEagmvdtkqlaallkaaekagakvilvGDerQ 127
                        r +++++ + + vDE   ++  q  ++++ + +++  v +vGD +Q
  KOO22947.1 254 LrtserTRLKYSRHwQHICVDEFQDTNGLQY-QVVSLLGRDHKNVFVVGDADQ 305
                 0333454456667779999999876655544.6888888889**********9 PP

  == domain 3  score: -2.6 bits;  conditional E-value: 1.8
      AAA_30  47 grviglAptgkaAkv.Lae 64 
                   v g+Ap+++aA + L +
  KOO22947.1 524 AVVEGAAPEAAAAVApLPK 542
                 4577888888888765555 PP

>> AAA_12  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.0       1.6   3.1e+03      18      35 ..     371     388 ..     362     415 .. 0.88
   2 !   19.2   0.0   3.8e-07   0.00075     142     194 ..     760     823 ..     722     826 .. 0.78

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 1.6
      AAA_12  18 vlLdtqYRmhpeIsrfps 35 
                   L+ +YR++++I++ + 
  KOO22947.1 371 LNLELNYRSRQAILDVAH 388
                 57999*******998765 PP

  == domain 2  score: 19.2 bits;  conditional E-value: 3.8e-07
      AAA_12 142 e....ievntvdgfQGrekdviilslVRsn......ekkeigflkderr.lNValTRAksklii 194
                 +    ++ +t+ +  G e d+++l  V         +++++  +++err + Va+TRAk++l++
  KOO22947.1 760 RdrsiVQLSTIHAAKGLEFDAVFLAGVEEGllphfySSNSLDEVEEERRlMYVAMTRAKQHLVV 823
                 0344599**********************77788888899997777666268**********98 PP

>> Viral_helicase1  Viral (Superfamily 1) RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.2   0.0     0.062   1.2e+02       3      36 ..      54      88 ..      52     109 .. 0.69
   2 ?   -2.2   0.0       1.4   2.9e+03      65      99 ..     270     305 ..     244     316 .. 0.60
   3 !   14.1   0.0   1.4e-05     0.028     178     232 ..     752     823 ..     713     824 .. 0.75

  Alignments for each domain:
  == domain 1  score: 2.2 bits;  conditional E-value: 0.062
  Viral_helicase1  3 vhGvpGcGKStlirkllrts.liltvnrptaellt 36
                     v++ pG GK++++   + +  + + v++++  ++t
       KOO22947.1 54 VAAGPGTGKTRVLTARIAHLvREVAVSPRRLLAVT 88
                     7789*********9999885544445544444444 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 1.4
  Viral_helicase1  65 ililDEylllhaGyill...laalskaklvilfGDplQ 99 
                       + +DE++  + G+ +    l+ +++ k+v+++GD  Q
       KOO22947.1 270 HICVDEFQDTN-GLQYQvvsLLGRDH-KNVFVVGDADQ 305
                      44566665544.44444112233333.46777777666 PP

  == domain 3  score: 14.1 bits;  conditional E-value: 1.4e-05
  Viral_helicase1 178 ealgvr........evttvhevqGltfdkVtl..........vllketdlelisesrenllvAlTRhrkslvi 232
                       a+g +        + +t h + Gl+fd V l          +++ +++l++++e+r  ++vA+TR+++ lv+
       KOO22947.1 752 DAHGTQivrdrsivQLSTIHAAKGLEFDAVFLagveegllphFYS-SNSLDEVEEERRLMYVAMTRAKQHLVV 823
                      44555556666666799*************995555554444455.3455667788************99975 PP

>> AAA_11  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.7   0.1   1.2e-06    0.0024      17      76 ..      50     103 ..      35     305 .. 0.69

  Alignments for each domain:
  == domain 1  score: 17.7 bits;  conditional E-value: 1.2e-06
      AAA_11  17 seitliqGPPGtgKTktivellsqllsrrkseeeksakpriLvCapSNaAvDellerllr 76 
                    + +   PGtgKT+++++ +++l      +e +  ++r+L+ + +N+A  el er+  
  KOO22947.1  50 GP-VRVAAGPGTGKTRVLTARIAHL-----VREVAVSPRRLLAVTFTNKAARELRERVTA 103
                 33.3455557***************.....56899**********************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1034 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       558  (0.0311228); expected 358.6 (0.02)
Passed bias filter:                      425  (0.0237046); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.74u 0.28s 00:00:01.02 Elapsed: 00:00:00.46
# Mc/sec: 6771.02
//
Query:       KOO22948.1  [L=282]
Description: hypothetical protein Ctob_003507 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.4e-11   43.1   0.2    1.2e-09   37.5   0.4    2.0  2  p450      Cytochrome P450
  ------ inclusion threshold ------
        2.7    8.5   6.0         16    6.1   0.6    3.0  3  TilS      TilS substrate binding domain


Domain annotation for each model (and alignments):
>> p450  Cytochrome P450
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    3.3   0.0    0.0031        28      93     168 ..       9      84 ..       3      99 .. 0.78
   2 !   37.5   0.4   1.3e-13   1.2e-09     385     440 ..     216     270 ..     215     278 .. 0.89

  Alignments for each domain:
  == domain 1  score: 3.3 bits;  conditional E-value: 0.0031
                 HHHHHHHHHHHHHHTSHSTT.THHHHHHHHHHHHHHHHHCCCCHCS...EEETHHHHHHHHHHHHHHHHHSSHHHTTTSS CS
        p450  93 ekwkklRrfltptltsfgkl.sleelveeeaedlveklrkkagess...elditellskaaldvigsilFgarfdllede 168
                 + ++ lR+ l + +    +  +  + + +++e+l++++  ++++++    + +++l+++++ldv g+ ++++ ++   d 
  KOO22948.1   9 PSHRALRSALQQLFSPA-ATrAAHADLVSCTERLLDRIAAHVSSKGrdaPVPVYRLVQEYVLDVTGRAFLSCVIS---DA 84 
                 66777777777777766.4447778888999*************999999****************999998655...33 PP

  == domain 2  score: 37.5 bits;  conditional E-value: 1.3e-13
                 GGGGB-TTSCTESSCTT--TTEEGGGS-TTHHHHHHHHHHHHHHHHHHEEEEESTS CS
        p450 385 peRFldekgnskrksfaflPFGaGpRnCiGerlArmelklflatlLqnFevelqpe 440
                 pe F ++ + ++r + +flPF++G++ C+  ++A +e++++l+ lLq+Fe+   p+
  KOO22948.1 216 PEFFTRAAQ-KSRTPGSFLPFSTGAKGCPASGFALHEMRVLLVMLLQRFELAGAPG 270
                 777888988.66**************************************987666 PP

>> TilS  TilS substrate binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.9   0.5    0.0084        75      28      55 ..       7      34 ..       1      49 [. 0.78
   2 ?    6.1   0.6    0.0018        16      10      34 ..     108     132 ..     106     147 .. 0.88
   3 ?   -2.4   0.0       0.8   7.2e+03      16      27 ..     137     148 ..     135     152 .. 0.81

  Alignments for each domain:
  == domain 1  score: 3.9 bits;  conditional E-value: 0.0084
                T--HHHHHHH.HHHHH.H-S-SEEEEE- CS
        TilS 28 pmpsaahLeellrqlllaaedaqpqldl 55
                + ps++ L+  l+ql + a+ ++++ dl
  KOO22948.1  7 STPSHRALRSALQQLFSPAATRAAHADL 34
                4799999999999999966666666555 PP

  == domain 2  score: 6.1 bits;  conditional E-value: 0.0018
                 -HHHHHHHHHHHHHHTTTT--HHHH CS
        TilS  10 sparqrrlLRrWLaqlglpmpsaah 34 
                 ++ar  +  R+WL++  +++ps+++
  KOO22948.1 108 PWARGVACARAWLSRTEPLEPSRLQ 132
                 89999999*********99***987 PP

  == domain 3  score: -2.4 bits;  conditional E-value: 0.8
                 HHHHHHHHHTTT CS
        TilS  16 rlLRrWLaqlgl 27 
                 ++LRr+ ++ g+
  KOO22948.1 137 AVLRRICDAMGA 148
                 689999998884 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (282 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       320  (0.0178482); expected 358.6 (0.02)
Passed bias filter:                      257  (0.0143343); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.42u 0.24s 00:00:00.65 Elapsed: 00:00:00.40
# Mc/sec: 2110.42
//
Query:       KOO22949.1  [L=145]
Description: hypothetical protein Ctob_003511 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
     0.0051   15.9   0.1       0.45    9.5   0.0    2.0  2  DUF4071   Domain of unknown function (DUF4071)
  ------ inclusion threshold ------
      0.099   12.2   0.0       0.15   11.7   0.0    1.3  1  Ras       Ras family
        0.1   12.0   0.0       0.16   11.4   0.0    1.3  1  DUF99     Protein of unknown function DUF99


Domain annotation for each model (and alignments):
>> DUF4071  Domain of unknown function (DUF4071)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.5   0.0   7.5e-05      0.45     175     203 ..      66      94 ..      56      97 .. 0.91
   2 !    4.5   0.0    0.0025        15     305     334 ..     110     140 ..     106     144 .. 0.76

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 7.5e-05
     DUF4071 175 qflYafALnrrnkegdrekalkvilkale 203
                 ++lYa A+ rr+ke+ re+al ++ +a+e
  KOO22949.1  66 EHLYARAVSRREKEQAREQALMMLADAME 94 
                 599*******************9998876 PP

  == domain 2  score: 4.5 bits;  conditional E-value: 0.0025
     DUF4071 305 leisvLae.dyskaiqAaeklfkLkppvWyl 334
                 le++++a  d++    A ekl  Lk+p Wy 
  KOO22949.1 110 LEAAIMAGvDEDALKPAQEKLAELKAPPWYS 140
                 677788762444445699************6 PP

>> Ras  Ras family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   2.5e-05      0.15     103     146 ..      10      54 ..       2      70 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 2.5e-05
                 TTSEEEEEEETTTGGGG-SS-HHHHHHHHHHHT.SEEEEEBTTTT CS
         Ras 103 envpivLvGnKvDleekravsteegeelakelg.lkfletSAktn 146
                 +++  v+vG  + +++   v+++eg+++a+++g   f+et+  t+
  KOO22949.1  10 DEICTVVVGIEASVASADPVTYQEGRAFAEDQGvGLFFETALATS 54 
                 568899***************************778999875555 PP

>> DUF99  Protein of unknown function DUF99
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   2.6e-05      0.16      58     101 ..      77     120 ..      62     134 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 2.6e-05
                 HCC-TTTTEEEEEESSSEETTTEE--HHHHHHHH---EEEEESS CS
       DUF99  58 vkrleredirvvlldGitiagFNvvDlerlheetglPviavtre 101
                  k+  re+  ++l d++ +++F  v+le+l e+++  ++a + e
  KOO22949.1  77 EKEQAREQALMMLADAMEVGWFERVELEKLEEALEAAIMAGVDE 120
                 456689999999**********************9998876655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (145 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       622  (0.0346924); expected 358.6 (0.02)
Passed bias filter:                      415  (0.0231469); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.39u 0.25s 00:00:00.64 Elapsed: 00:00:00.41
# Mc/sec: 1070.78
//
Query:       KOO22950.1  [L=111]
Description: hypothetical protein Ctob_003258 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
  ------ inclusion threshold ------
      0.071   13.2   0.0       0.09   12.9   0.0    1.1  1  MaoC_dehydrat_N  N-terminal half of MaoC dehydratase


Domain annotation for each model (and alignments):
>> MaoC_dehydrat_N  N-terminal half of MaoC dehydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0     5e-06      0.09      67     105 ..      31      69 ..      20      82 .. 0.89

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 5e-06
  MaoC_dehydrat_N  67 algidlsrllhgeqefeyhepiraGDelttesriadvyd 105
                      +l++  ++ll +e   e++  ++ GD   +e+r+++++ 
       KOO22950.1  31 KLEMMQKQLLRAEAAAEMESAVCRGDLAAFETRLDHWRS 69 
                      5678889*****************************997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (111 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       282  (0.0157287); expected 358.6 (0.02)
Passed bias filter:                      247  (0.0137766); expected 358.6 (0.02)
Passed Vit filter:                         9  (0.00050198); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.35u 0.23s 00:00:00.57 Elapsed: 00:00:00.37
# Mc/sec: 892.31
//
Query:       KOO22951.1  [L=124]
Description: 3-oxo-5-alpha-steroid 4-dehydrogenase 1 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.4e-35  122.5   0.1    1.6e-35  122.3   0.1    1.0  1  Steroid_dh  3-oxo-5-alpha-steroid 4-dehydrogenase
      0.008   15.7   0.0     0.0092   15.5   0.0    1.1  1  DUF1295     Protein of unknown function (DUF1295)


Domain annotation for each model (and alignments):
>> Steroid_dh  3-oxo-5-alpha-steroid 4-dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  122.3   0.1   1.8e-39   1.6e-35      39     150 .]      11     124 .]       4     124 .] 0.94

  Alignments for each domain:
  == domain 1  score: 122.3 bits;  conditional E-value: 1.8e-39
  Steroid_dh  39 kdrlllgivlfvlgmliniksdiiLrelrkegetkykiprgglFelvsapnyfgEilewigyalvtkslaa.laFalftvlnltvraaahhkwykkkf. 135
                   + +lg +lf++gm  ni+sd+iLr+lr++get+ykiprgglFe+vs ++++gEi+ewig+a +t  + a +aFa f v+ +++ra+a+h+w    f 
  KOO22951.1  11 APNAILGYALFAFGMAANIHSDYILRTLRQPGETAYKIPRGGLFEYVSGAHFVGEIIEWIGFATATGFVSApAAFAAFNVMGIGTRAIATHEWSVSYFg 109
                 467899***********************************************************997766478************************* PP

  Steroid_dh 136 ekYpksRkiliPfvf 150
                 +kYp+ Rk liP v+
  KOO22951.1 110 DKYPQGRKRLIPLVW 124
                 *************98 PP

>> DUF1295  Protein of unknown function (DUF1295)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.0     1e-06    0.0092     120     188 ..      13      81 ..       4     102 .. 0.88

  Alignments for each domain:
  == domain 1  score: 15.5 bits;  conditional E-value: 1e-06
     DUF1295 120 ldviglalwlvgivlealaDqQlsafkkdpankgkvldsGLwrysRHPNYfgealiWwglflialeale 188
                  +++g al+ +g+++++ +D  l + ++  + + k+ + GL++y     + ge++ W+g+  ++  +++
  KOO22951.1  13 NAILGYALFAFGMAANIHSDYILRTLRQPGETAYKIPRGGLFEYVSGAHFVGEIIEWIGFATATGFVSA 81 
                 5789*******************************************************9876655544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (124 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       270  (0.0150594); expected 358.6 (0.02)
Passed bias filter:                      198  (0.0110436); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.36u 0.24s 00:00:00.60 Elapsed: 00:00:00.39
# Mc/sec: 943.79
//
Query:       KOO22952.1  [L=28]
Description: hypothetical protein Ctob_003253 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (28 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       149  (0.00831056); expected 358.6 (0.02)
Passed bias filter:                      127  (0.0070835); expected 358.6 (0.02)
Passed Vit filter:                         1  (5.57756e-05); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.24s 00:00:00.54 Elapsed: 00:00:00.38
# Mc/sec: 223.09
//
Query:       KOO22953.1  [L=246]
Description: hypothetical protein Ctob_003256 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (246 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       252  (0.0140554); expected 358.6 (0.02)
Passed bias filter:                      244  (0.0136092); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.40u 0.26s 00:00:00.66 Elapsed: 00:00:00.41
# Mc/sec: 1781.77
//
Query:       KOO22954.1  [L=326]
Description: guanylate cyclase activator 1a [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    3.2e-26   88.9   5.4    3.6e-05   23.0   0.0    4.4  4  EF-hand_1     EF hand
    5.8e-24   81.9   4.7    2.1e-05   24.1   0.0    4.5  4  EF-hand_6     EF-hand domain
    8.6e-23   78.8   3.3    4.1e-05   22.9   0.1    4.5  4  EF-hand_5     EF hand
    1.8e-19   70.0   3.5    4.2e-09   36.7   0.1    3.1  3  EF-hand_7     EF-hand domain pair
    5.8e-16   58.1   8.8    0.00012   21.8   0.9    4.3  4  EF-hand_8     EF-hand domain pair
    0.00075   19.8   2.1        0.6   10.5   0.0    3.3  3  SPARC_Ca_bdg  Secreted protein acidic and rich in cysteine Ca
  ------ inclusion threshold ------
      0.044   13.7   0.2        2.3    8.1   0.1    2.6  3  Caleosin      Caleosin related protein
      0.072   13.4   0.4        5.7    7.3   0.0    2.9  3  EF-hand_9     EF-hand domain


Domain annotation for each model (and alignments):
>> EF-hand_1  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.0   0.0   1.6e-08   3.6e-05       4      28 ..      55      79 ..      52      80 .. 0.91
   2 !   23.0   0.1   1.6e-08   3.7e-05       2      24 ..      91     113 ..      90     117 .. 0.89
   3 !   22.5   0.0   2.3e-08   5.1e-05       2      27 ..     127     152 ..     126     154 .. 0.91
   4 !   20.4   0.1   1.1e-07   0.00024       1      23 [.     176     198 ..     176     199 .. 0.94

  Alignments for each domain:
  == domain 1  score: 23.0 bits;  conditional E-value: 1.6e-08
                HHHHHHTTTSSSEEEHHHHHHHHHH CS
   EF-hand_1  4 eiFrefDkDgdGkIdfeEfkellkk 28
                 +F+++D+D++G I++ Ef++++++
  KOO22954.1 55 SLFEVMDVDRNGMISLCEFRDCMAT 79
                68*********************87 PP

  == domain 2  score: 23.0 bits;  conditional E-value: 1.6e-08
                 HHHHHHHHTTTSSSEEEHHHHHH CS
   EF-hand_1   2 lkeiFrefDkDgdGkIdfeEfke 24 
                  +e+F+efD Dg+G I+++E+ +
  KOO22954.1  91 YDELFAEFDSDGSGEISYKEYFS 113
                 589*****************876 PP

  == domain 3  score: 22.5 bits;  conditional E-value: 2.3e-08
                 HHHHHHHHTTTSSSEEEHHHHHHHHH CS
   EF-hand_1   2 lkeiFrefDkDgdGkIdfeEfkellk 27 
                 ++++F+ +D  gdG+Id+ Ef++++ 
  KOO22954.1 127 FRNFFMQADASGDGTIDKHEFRRAVV 152
                 7899*******************986 PP

  == domain 4  score: 20.4 bits;  conditional E-value: 1.1e-07
                 HHHHHHHHHTTTSSSEEEHHHHH CS
   EF-hand_1   1 elkeiFrefDkDgdGkIdfeEfk 23 
                 e++++F+ +D+Dg+G++++ E+ 
  KOO22954.1 176 EIDDVFDAMDVDGSGTLTLHELH 198
                 79*******************95 PP

>> EF-hand_6  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.3   0.0   6.5e-07    0.0015       4      30 ..      55      80 ..      52      82 .. 0.90
   2 !   16.0   0.1   3.5e-06    0.0079       3      21 ..      92     110 ..      91     120 .. 0.88
   3 !   22.1   0.1   4.2e-08   9.3e-05       2      26 ..     127     151 ..     126     156 .. 0.92
   4 !   24.1   0.0   9.4e-09   2.1e-05       1      27 [.     176     202 ..     176     207 .. 0.92

  Alignments for each domain:
  == domain 1  score: 18.3 bits;  conditional E-value: 6.5e-07
   EF-hand_6  4 eaFklfDkdgdGkidaeElrkalrkal 30
                ++F+ +D+d++G i+  E+r+++   l
  KOO22954.1 55 SLFEVMDVDRNGMISLCEFRDCMA-TL 80
                79********************98.45 PP

  == domain 2  score: 16.0 bits;  conditional E-value: 3.5e-06
   EF-hand_6   3 reaFklfDkdgdGkidaeE 21 
                 +e+F +fD dg+G+i+++E
  KOO22954.1  92 DELFAEFDSDGSGEISYKE 110
                 589**************99 PP

  == domain 3  score: 22.1 bits;  conditional E-value: 4.2e-08
   EF-hand_6   2 lreaFklfDkdgdGkidaeElrkal 26 
                 +r +F++ D +gdG+id++E+r+a 
  KOO22954.1 127 FRNFFMQADASGDGTIDKHEFRRAV 151
                 899******************9975 PP

  == domain 4  score: 24.1 bits;  conditional E-value: 9.4e-09
   EF-hand_6   1 elreaFklfDkdgdGkidaeElrkalr 27 
                 e++++F+++D+dg+G+++ +El k lr
  KOO22954.1 176 EIDDVFDAMDVDGSGTLTLHELHKNLR 202
                 6899******************99888 PP

>> EF-hand_5  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.4   0.0     1e-06    0.0023       4      25 .]      56      77 ..      53      77 .. 0.90
   2 !   15.0   0.0   5.5e-06     0.012       3      20 ..      93     110 ..      90     114 .. 0.89
   3 !   22.9   0.1   1.8e-08   4.1e-05       2      24 ..     128     151 ..     127     152 .. 0.87
   4 !   21.1   0.1   6.5e-08   0.00015       1      22 [.     177     198 ..     177     201 .. 0.91

  Alignments for each domain:
  == domain 1  score: 17.4 bits;  conditional E-value: 1e-06
                HHHHH-SS-SSCE-HHHHHHHH CS
   EF-hand_5  4 tFqaiDlNgDGkIskeELktlv 25
                +F+ +D+++ G Is  E++ ++
  KOO22954.1 56 LFEVMDVDRNGMISLCEFRDCM 77
                7*****************9865 PP

  == domain 2  score: 15.0 bits;  conditional E-value: 5.5e-06
                 HHHHHH-SS-SSCE-HHH CS
   EF-hand_5   3 dtFqaiDlNgDGkIskeE 20 
                 ++F ++D +g+G Is  E
  KOO22954.1  93 ELFAEFDSDGSGEISYKE 110
                 49*************998 PP

  == domain 3  score: 22.9 bits;  conditional E-value: 1.8e-08
                 HHHHHHH-SS-SSCE-HHHHHH.H CS
   EF-hand_5   2 kdtFqaiDlNgDGkIskeELkt.l 24 
                 + +F ++D+ gDG+I+k E+++ +
  KOO22954.1 128 RNFFMQADASGDGTIDKHEFRRaV 151
                 568*****************9845 PP

  == domain 4  score: 21.1 bits;  conditional E-value: 6.5e-08
                 HHHHHHHH-SS-SSCE-HHHHH CS
   EF-hand_5   1 lkdtFqaiDlNgDGkIskeELk 22 
                 ++d+F+a+D++g+G+++  EL 
  KOO22954.1 177 IDDVFDAMDVDGSGTLTLHELH 198
                 789*****************95 PP

>> EF-hand_7  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.8   0.1   5.3e-05      0.12      45      70 ..      49      77 ..      24      78 .. 0.68
   2 !   32.7   0.5   3.5e-11   7.8e-08       7      69 ..      56     114 ..      50     116 .. 0.91
   3 !   36.7   0.1   1.9e-12   4.2e-09       5      68 ..     128     199 ..     125     202 .. 0.82

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 5.3e-05
   EF-hand_7 45 e...lellfkefDtdkdGvisfdEFlkly 70
                +   +  lf+ +D d++G is+ EF+  +
  KOO22954.1 49 HistVSSLFEVMDVDRNGMISLCEFRDCM 77
                23347799999**************9755 PP

  == domain 2  score: 32.7 bits;  conditional E-value: 3.5e-11
   EF-hand_7   7 aFkelDtdgdgyldkeellrllrkifqgagegsklsdeelellfkefDtdkdGvisfdEFlkl 69 
                  F+ +D+d++g+++ +e+++ +  +    g g+ ++ +  ++lf efD+d++G+is+ E+  +
  KOO22954.1  56 LFEVMDVDRNGMISLCEFRDCMATL----GDGFRFPTHIYDELFAEFDSDGSGEISYKEYFSY 114
                 6999***************999888....889999999999******************9776 PP

  == domain 3  score: 36.7 bits;  conditional E-value: 1.9e-12
   EF-hand_7   5 keaFkelDtdgdgyldkeellrllrkifqgagegsklsd.........eelellfkefDtdkdGvisfdEFlk 68 
                 +  F + D  gdg +dk e++r++ +++ g g g+++++          e++++f+ +D d++G++++ E++k
  KOO22954.1 128 RNFFMQADASGDGTIDKHEFRRAVVALHGG-GSGNDSTShemellahsNEIDDVFDAMDVDGSGTLTLHELHK 199
                 56799********************99999.5555555534555555566******************99876 PP

>> EF-hand_8  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.4   0.1   6.2e-07    0.0014      27      53 ..      52      78 ..      42      80 .. 0.93
   2 !   17.3   0.1   1.4e-06    0.0031      29      54 ..      92     117 ..      89     118 .. 0.93
   3 !    8.8   0.0   0.00064       1.4      32      51 ..     131     150 ..     125     154 .. 0.80
   4 !   21.8   0.9   5.5e-08   0.00012       2      49 ..     139     198 ..     138     201 .. 0.86

  Alignments for each domain:
  == domain 1  score: 18.4 bits;  conditional E-value: 6.2e-07
   EF-hand_8 27 evdilfrefDtdgdGkisfeEFcvlle 53
                 v +lf  +D d++G+is+ EF ++++
  KOO22954.1 52 TVSSLFEVMDVDRNGMISLCEFRDCMA 78
                6899*********************97 PP

  == domain 2  score: 17.3 bits;  conditional E-value: 1.4e-06
   EF-hand_8  29 dilfrefDtdgdGkisfeEFcvller 54 
                 d+lf efD dg+G is++E++ ++ r
  KOO22954.1  92 DELFAEFDSDGSGEISYKEYFSYVLR 117
                 789******************99865 PP

  == domain 3  score: 8.8 bits;  conditional E-value: 0.00064
   EF-hand_8  32 frefDtdgdGkisfeEFcvl 51 
                 f+ +D  gdG+i++ EF   
  KOO22954.1 131 FMQADASGDGTIDKHEFRRA 150
                 78899999999999999765 PP

  == domain 4  score: 21.8 bits;  conditional E-value: 5.5e-08
   EF-hand_8   2 kgkItreelrrilrilglkk............glseeevdilfrefDtdgdGkisfeEFc 49 
                 +g I+++e+rr++ +l+  +                +e+d++f+++D dg+G++++ E +
  KOO22954.1 139 DGTIDKHEFRRAVVALHGGGsgndstshemelLAHSNEIDDVFDAMDVDGSGTLTLHELH 198
                 89*********997775444888999999987777889******************9988 PP

>> SPARC_Ca_bdg  Secreted protein acidic and rich in cysteine Ca binding region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.3   0.5    0.0012       2.8      34     111 ..      31     112 ..      13     114 .. 0.69
   2 !   10.5   0.0   0.00027       0.6      60     111 ..      95     148 ..      91     150 .. 0.85
   3 ?   -0.0   0.0      0.48   1.1e+03      52      77 ..     173     198 ..     160     203 .. 0.67

  Alignments for each domain:
  == domain 1  score: 8.3 bits;  conditional E-value: 0.0012
  SPARC_Ca_bdg  34 kehleelekkeeeknlkeckepvawkFsklDtnsdkvlsksELaplrapl....vklehCikpflescDadkdkkislkEwc 111
                    e++++ ++k+ ++ l+++ ++v   F+ +D+++++++s  E ++  a+l        h  ++++ + D+d  ++is kE+ 
    KOO22954.1  31 FEKKRHDQHKKLRDLLSKHISTVSSLFEVMDVDRNGMISLCEFRDCMATLgdgfRFPTHIYDELFAEFDSDGSGEISYKEYF 112
                   2344555556666667777788888899999999999999998887777632223457888889999999999999999885 PP

  == domain 2  score: 10.5 bits;  conditional E-value: 0.00027
  SPARC_Ca_bdg  60 FsklDtnsdkvlsksELap..lraplvklehCikpflescDadkdkkislkEwc 111
                   F ++D +  + +s +E  +  lr +l +  +  ++f++++Da  d++i+++E+ 
    KOO22954.1  95 FAEFDSDGSGEISYKEYFSyvLRDSLRRKATSFRNFFMQADASGDGTIDKHEFR 148
                   778888888888888876544889999999999*******************95 PP

  == domain 3  score: -0.0 bits;  conditional E-value: 0.48
  SPARC_Ca_bdg  52 ckepvawkFsklDtnsdkvlsksELa 77 
                   +++++   F+ +D++  ++l+ +EL+
    KOO22954.1 173 HSNEIDDVFDAMDVDGSGTLTLHELH 198
                   44555666777777777777777775 PP

>> Caleosin  Caleosin related protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.0      0.63   1.4e+03      13      37 ..      60      84 ..      48      91 .. 0.81
   2 ?    4.1   0.0     0.018        40      89     119 ..      85     115 ..      81     126 .. 0.88
   3 ?    8.1   0.1     0.001       2.3      13     119 ..      98     201 ..      98     208 .. 0.81

  Alignments for each domain:
  == domain 1  score: -1.0 bits;  conditional E-value: 0.63
    Caleosin 13 fDrdkdGiiypldtyrgfralgfnv 37
                 D d++G+i + +    + +lg ++
  KOO22954.1 60 MDVDRNGMISLCEFRDCMATLGDGF 84
                69999****9999988888887655 PP

  == domain 2  score: 4.1 bits;  conditional E-value: 0.018
    Caleosin  89 rfvpqkfeeifskyakekkdaltlkevlell 119
                 rf  + ++e+f++++++ ++++++ke ++++
  KOO22954.1  85 RFPTHIYDELFAEFDSDGSGEISYKEYFSYV 115
                 7888899*******************98876 PP

  == domain 3  score: 8.1 bits;  conditional E-value: 0.001
    Caleosin  13 fDrdkdGiiypldtyrgfralgfnvllsllaalvihlalsyptlpswlpdplfriyvknihkakhgSdsgaYdeeGrfvpqkfeeifskyakekkdalt 111
                 fD+d  G i   + ++ + +  +   ++ +  +++++  s    ++++ +  fr  v  +h    g ds +++ e     ++ +++f+  + + +++lt
  KOO22954.1  98 FDSDGSGEISYKEYFSYVLRDSLRRKATSFRNFFMQADASG---DGTIDKHEFRRAVVALHGGGSGNDSTSHEMELLAHSNEIDDVFDAMDVDGSGTLT 193
                 67777777777777776666666666666666666665554...46677788999999***************************************** PP

    Caleosin 112 lkevlell 119
                 l+e+ + l
  KOO22954.1 194 LHELHKNL 201
                 ***98866 PP

>> EF-hand_9  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.3   0.0    0.0026       5.7       2      64 ..      55     118 ..      54     120 .. 0.83
   2 ?   -3.6   0.0       6.4   1.4e+04      45      60 ..     135     149 ..     129     151 .. 0.72
   3 ?    3.2   0.0     0.051   1.1e+02       2      25 ..     179     202 ..     178     207 .. 0.89

  Alignments for each domain:
  == domain 1  score: 7.3 bits;  conditional E-value: 0.0026
   EF-hand_9   2 tvFevcDtqktGrVpvsrlidyLravtaq.dpeeseLeelakelDPdgedasvdldtflrvmre 64 
                 ++Fev D+++ G + + +  d +   +     + +  +el +e+D dg ++  +++ f  v+r+
  KOO22954.1  55 SLFEVMDVDRNGMISLCEFRDCMATLGDGfRFPTHIYDELFAEFDSDGSGEISYKEYFSYVLRD 118
                 68**************999999999988766666788999999999999666677778888776 PP

  == domain 2  score: -3.6 bits;  conditional E-value: 6.4
   EF-hand_9  45 DPdgedasvdldtflr 60 
                 D  g  +++d+  f r
  KOO22954.1 135 DASGD-GTIDKHEFRR 149
                 55555.9999999976 PP

  == domain 3  score: 3.2 bits;  conditional E-value: 0.051
   EF-hand_9   2 tvFevcDtqktGrVpvsrlidyLr 25 
                  vF++ D++  G+ ++ +l + Lr
  KOO22954.1 179 DVFDAMDVDGSGTLTLHELHKNLR 202
                 68**************99988887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (326 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1183  (0.0659825); expected 358.6 (0.02)
Passed bias filter:                      903  (0.0503653); expected 358.6 (0.02)
Passed Vit filter:                        78  (0.00435049); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.57u 0.27s 00:00:00.84 Elapsed: 00:00:00.42
# Mc/sec: 2306.54
//
Query:       KOO22955.1  [L=696]
Description: hypothetical protein Ctob_003254 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.5e-11   43.0   0.0    1.3e-10   41.2   0.0    2.0  2  RAP        RAP domain
     0.0022   18.1   0.0     0.0071   16.5   0.0    1.8  2  MTES_1575  REase_MTES_1575
  ------ inclusion threshold ------
        3.5    7.8   5.1        6.8    6.9   0.3    3.1  3  PufQ       PufQ cytochrome subunit


Domain annotation for each model (and alignments):
>> RAP  RAP domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.1      0.74   4.4e+03      24      40 ..     237     253 ..     223     255 .. 0.78
   2 !   41.2   0.0   2.1e-14   1.3e-10       1      56 [.     613     669 ..     613     671 .. 0.97

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 0.74
         RAP  24 kriLsklGykvinIpyf 40 
                 +  L++ ++ v +I y+
  KOO22955.1 237 MSYLQAVDFAVFYIGYY 253
                 77899999999999988 PP

  == domain 2  score: 41.2 bits;  conditional E-value: 2.1e-14
         RAP   1 IevdGpshyyknsknltgktklKkriLsklGykvinIpyfeWnql.knkedkveylk 56 
                 +e dGp+h+  +++  t++t+lK+r +++lG  +  Ip++eWn + ++ +++ eyl+
  KOO22955.1 613 VEADGPHHFRARTHVPTASTQLKRRQVRALGEILCPIPWWEWNACgSDVQQQGEYLR 669
                 699*************************************************99*97 PP

>> MTES_1575  REase_MTES_1575
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.0       1.6   9.5e+03      65      74 ..     508     517 ..     503     524 .. 0.76
   2 !   16.5   0.0   1.2e-06    0.0071       1      54 [.     573     626 ..     573     656 .. 0.85

  Alignments for each domain:
  == domain 1  score: -3.1 bits;  conditional E-value: 1.6
   MTES_1575  65 LerlGWkilR 74 
                  e++ W+i+R
  KOO22955.1 508 FESMSWEIHR 517
                 5788888888 PP

  == domain 2  score: 16.5 bits;  conditional E-value: 1.2e-06
   MTES_1575   1 FeeeVaeaLrergykvkpqvg.vggfriDlvvedpgkyllaIecdgdkyhsskea 54 
                 F+++V++ L++ g++ +p+v   +g+++D  v  + + ++++e dg+++  +++ 
  KOO22955.1 573 FQRQVTDGLAALGLRPEPEVVtSSGYTLDALVHWK-GERVGVEADGPHHFRARTH 626
                 99**************999863789*******999.***********88776654 PP

>> PufQ  PufQ cytochrome subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.9   0.3    0.0011       6.8      22      49 ..     254     281 ..     251     296 .. 0.79
   2 ?   -3.7   0.2       2.4   1.4e+04      32      44 ..     440     452 ..     438     455 .. 0.78
   3 ?    1.6   0.0     0.051   3.1e+02      33      47 ..     479     493 ..     477     498 .. 0.87

  Alignments for each domain:
  == domain 1  score: 6.9 bits;  conditional E-value: 0.0011
        PufQ  22 FavYFaiilvaalPlAlltWvlaairsr 49 
                 F+v Fa++l+  l +A+l++     r  
  KOO22955.1 254 FYVLFALVLLMNLLVAMLSFTFVETRLE 281
                 9******************987766643 PP

  == domain 2  score: -3.7 bits;  conditional E-value: 2.4
        PufQ  32 aalPlAlltWvla 44 
                 a + +A ++W+ a
  KOO22955.1 440 APVDVANVAWAYA 452
                 5678999999876 PP

  == domain 3  score: 1.6 bits;  conditional E-value: 0.051
        PufQ  33 alPlAlltWvlaair 47 
                 + PlA l+W+ aa+ 
  KOO22955.1 479 TRPLAKLAWACAAVE 493
                 67**********995 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (696 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       622  (0.0346924); expected 358.6 (0.02)
Passed bias filter:                      274  (0.0152825); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.56u 0.25s 00:00:00.81 Elapsed: 00:00:00.39
# Mc/sec: 5290.21
//
Query:       KOO22956.1  [L=351]
Description: NHL repeat containing protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    4.2e-09   36.3   0.0       0.13   11.8   0.0    4.1  4  SGL             SMP-30/Gluconolactonase/LRE-like region
    1.2e-07   31.4   2.3        0.1   12.7   0.1    4.4  5  NHL             NHL repeat
     0.0029   17.6   0.0        3.3    7.6   0.0    3.2  3  Phytase-like    Esterase-like activity of phytase
     0.0069   16.0   0.0      0.033   13.8   0.0    1.9  3  PQQ_2           PQQ-like domain
  ------ inclusion threshold ------
      0.029   13.6   0.0        1.6    7.9   0.0    2.2  2  SdiA-regulated  SdiA-regulated
       0.15   12.4   0.0         10    6.7   0.0    2.9  2  Reg_prop        Two component regulator propeller


Domain annotation for each model (and alignments):
>> SGL  SMP-30/Gluconolactonase/LRE-like region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.1   0.0     0.021        62     172     221 ..     100     148 ..      86     155 .. 0.79
   2 !    6.0   0.0    0.0026       7.7     185     235 ..     155     204 ..     148     206 .. 0.87
   3 !   11.8   0.0   4.5e-05      0.13     186     218 ..     257     290 ..     232     300 .. 0.84
   4 !   10.4   0.0   0.00011      0.34     184     214 ..     311     341 ..     290     349 .. 0.77

  Alignments for each domain:
  == domain 1  score: 3.1 bits;  conditional E-value: 0.021
         SGL 172 nrrvfadlkkgegepDGlavDaeGnvwvAvwgggkvvrfdpd.Gklieeik 221
                 + +vfa +k+ +g p G+a+   G +++A + ++ v r++   G+l+++i 
  KOO22956.1 100 QYKVFASGKELDG-PVGMALH-RGALFIASFTNDLVLRVNATsGELLGRIG 148
                 4567777777765.7788874.79***************9999***99985 PP

  == domain 2  score: 6.0 bits;  conditional E-value: 0.0026
         SGL 185 epDGlavDaeGnvwvAvwgggkvvrfdpd.GklieeiklpakrvtscaFgGp 235
                  p G+a+  +G ++vA +   +++ fdp+ G  ++  k+ a+  ts+aF+ +
  KOO22956.1 155 CPEGIAIGPDGVLYVASFLLPHLSMFDPEsGAYLG--KFGASAGTSVAFAST 204
                 588*****************************999..888889999999765 PP

  == domain 3  score: 11.8 bits;  conditional E-value: 4.5e-05
         SGL 186 pDGlavDa.eGnvwvAvwgggkvvrfdpdGklie 218
                 p G+++D  +G+++v  ++++kv rf+p G+ i+
  KOO22956.1 257 PVGITCDRaSGHIFVSSYKDHKVLRFSPLGQFIG 290
                 779****99*********************9886 PP

  == domain 4  score: 10.4 bits;  conditional E-value: 0.00011
         SGL 184 gepDGlavDaeGnvwvAvwgggkvvrfdpdG 214
                  +p Gla  ++G +wvA + +g ++rf++  
  KOO22956.1 311 RNPSGLAFAEDGTLWVASYPTGAITRFNNSA 341
                 5699***********************9875 PP

>> NHL  NHL repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.0       2.4   7.2e+03       1      15 [.     110     123 ..     110     126 .. 0.68
   2 !   12.7   0.1   3.4e-05       0.1       1      18 [.     153     170 ..     153     170 .. 0.95
   3 ?   -2.5   0.0       2.3   6.8e+03       3      28 .]     213     238 ..     211     238 .. 0.72
   4 !    7.1   0.1     0.002         6       2      28 .]     255     282 ..     254     282 .. 0.91
   5 !    8.3   0.0   0.00082       2.5       3      18 ..     312     327 ..     311     337 .. 0.85

  Alignments for each domain:
  == domain 1  score: -2.6 bits;  conditional E-value: 2.4
                 BSSEEEEEEETTTEE CS
         NHL   1 fnyPhGvavdsnGdi 15 
                 +  P G a+   G +
  KOO22956.1 110 LDGPVGMALH-RGAL 123
                 5689999985.5555 PP

  == domain 2  score: 12.7 bits;  conditional E-value: 3.4e-05
                 BSSEEEEEEETTTEEEEE CS
         NHL   1 fnyPhGvavdsnGdiyVa 18 
                 + +P+G+a+ ++G +yVa
  KOO22956.1 153 LDCPEGIAIGPDGVLYVA 170
                 689**************8 PP

  == domain 3  score: -2.5 bits;  conditional E-value: 2.3
                 SEEEEEEETTTEEEEEECCCTEEEEE CS
         NHL   3 yPhGvavdsnGdiyVaDsenhrvqvF 28 
                  +++++ d  Gd+ V+ ++++ +++F
  KOO22956.1 213 GAEDLTFDLLGDVHVTAYYSNAIFKF 238
                 56677777778888887788888877 PP

  == domain 4  score: 7.1 bits;  conditional E-value: 0.002
                 SSEEEEEEE.TTTEEEEEECCCTEEEEE CS
         NHL   2 nyPhGvavd.snGdiyVaDsenhrvqvF 28 
                 n P G++ d  +G+i+V+ ++ h v  F
  KOO22956.1 255 NGPVGITCDrASGHIFVSSYKDHKVLRF 282
                 68****************9999999877 PP

  == domain 5  score: 8.3 bits;  conditional E-value: 0.00082
                 SEEEEEEETTTEEEEE CS
         NHL   3 yPhGvavdsnGdiyVa 18 
                 +P+G+a   +G ++Va
  KOO22956.1 312 NPSGLAFAEDGTLWVA 327
                 8**************9 PP

>> Phytase-like  Esterase-like activity of phytase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.6   0.0    0.0011       3.3      67     115 ..     152     202 ..     115     229 .. 0.80
   2 !    4.7   0.0    0.0081        24      73     140 ..     260     326 ..     259     328 .. 0.57
   3 ?    2.9   0.0     0.029        87      57      96 ..     305     339 ..     292     350 .. 0.70

  Alignments for each domain:
  == domain 1  score: 7.6 bits;  conditional E-value: 0.0011
  Phytase-like  67 glD.pEgiavapdgtfwvssEggpfilefdad.Gkllrelplpaellpaas 115
                   +lD pEgia+ pdg ++v+s   p +  fd++ G  l+++   a++ +a +
    KOO22956.1 152 TLDcPEGIAIGPDGVLYVASFLLPHLSMFDPEsGAYLGKFGASAGTSVAFA 202
                   55548*************************999**9999988888766654 PP

  == domain 2  score: 4.7 bits;  conditional E-value: 0.0081
  Phytase-like  73 iav.apdgtfwvssEggpfilefdadGkllrelpl.paellpaaspd.....aglrrnrGfEglalspdgrkLya 140
                   i+   + g+++vss  ++ +l+f++ G++++  +  p e +     +     +++ rn +  gla++ dg+ L++
    KOO22956.1 260 ITCdRASGHIFVSSYKDHKVLRFSPLGQFIGVAAGaPMEQQ-----RklgdpNAPIRNPS--GLAFAEDGT-LWV 326
                   66656789999999999999999999999776521022211.....11222233333332..566666665.655 PP

  == domain 3  score: 2.9 bits;  conditional E-value: 0.029
  Phytase-like  57 dpdgapfpkkglDpEgiavapdgtfwvssEggpfilefda 96 
                   dp+ ap+     +p g+a+a+dgt+wv+s    +i +f+ 
    KOO22956.1 305 DPN-API----RNPSGLAFAEDGTLWVASYPTGAITRFNN 339
                   443.555....4777999*********9977777777775 PP

>> PQQ_2  PQQ-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.8   0.0   1.1e-05     0.033     115     232 ..      66     186 ..      44     189 .. 0.78
   2 ?   -3.3   0.0       1.9   5.6e+03      51      83 ..     238     273 ..     222     284 .. 0.48
   3 ?   -1.0   0.0      0.36   1.1e+03     199     224 ..     308     335 ..     259     348 .. 0.57

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 1.1e-05
       PQQ_2 115 saspava...gdtvvvgessgklvaldpkdGkvlWerel.aaprgtselsrvgdisgrpvva..egtVyassgqgrllal.dlatgr...rlw.ske.i 201
                 ++ ++++   ++ +v+ ++ + +v l+  +Gk+  ++++ a+++          ++g + +a  +g+++++s+ + l+   ++++g+   r   s+e +
  KOO22956.1  66 NPYSILHsglDELFVASFTLNHVVRLRWMTGKR-AQYKVfASGK---------ELDGPVGMAlhRGALFIASFTNDLVLRvNATSGEllgR-IgSDEtL 153
                 334444467778888899999999999999998.9999988877.........4557777776689**********87777******5533.3366656 PP

       PQQ_2 202 ssinglpildgdllyvvs.a.gelialdratGa 232
                   + g+ i ++++lyv s    +l ++d+++Ga
  KOO22956.1 154 DCPEGIAIGPDGVLYVASfLlPHLSMFDPESGA 186
                 66****************66***********97 PP

  == domain 2  score: -3.3 bits;  conditional E-value: 1.9
       PQQ_2  51 ldaatGkvlWettl...egpvvgaplvaegrvvvva 83 
                 ++ ++G+++ ++     +gpv  +   a g+++v +
  KOO22956.1 238 FNGTNGQIVSSYGKgfvNGPVGITCDRASGHIFVSS 273
                 444444444444422223333333444555555555 PP

  == domain 3  score: -1.0 bits;  conditional E-value: 0.36
       PQQ_2 199 keissinglpildgdllyvvs.a.geli 224
                  +i ++ gl  +++++l+v s   g ++
  KOO22956.1 308 APIRNPSGLAFAEDGTLWVASyPtGAIT 335
                 2355555555555566665553344444 PP

>> SdiA-regulated  SdiA-regulated
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.4   0.0     0.012        37     219     240 ..     150     171 ..     127     176 .. 0.86
   2 ?    7.9   0.0   0.00055       1.6     176     242 ..     259     330 ..     241     332 .. 0.80

  Alignments for each domain:
  == domain 1  score: 3.4 bits;  conditional E-value: 0.012
  SdiA-regulated 219 eedipqaEGvamDeegnlYivs 240
                      e++  +EG+a+  +g lY+ s
      KOO22956.1 150 DETLDCPEGIAIGPDGVLYVAS 171
                     5677889************987 PP

  == domain 2  score: 7.9 bits;  conditional E-value: 0.00055
  SdiA-regulated 176 slefdeetghllvLSdeSrllleldeegevlss.....lsLlkgsngLeedipqaEGvamDeegnlYivsEP 242
                     ++++d+++gh++v S   + +l+ +  g+++++     ++ +++  + +  i+++ G+a+ e+g+l++ s P
      KOO22956.1 259 GITCDRASGHIFVSSYKDHKVLRFSPLGQFIGVaagapMEQQRKLGDPNAPIRNPSGLAFAEDGTLWVASYP 330
                     678899999999999999999999999999987222223344444555678*****************9988 PP

>> Reg_prop  Two component regulator propeller
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.2   0.0       0.1   3.1e+02      10      22 ..     159     171 ..     156     172 .. 0.87
   2 ?    6.7   0.0    0.0035        10      11      23 ..     317     329 ..     307     329 .. 0.77

  Alignments for each domain:
  == domain 1  score: 2.2 bits;  conditional E-value: 0.1
                 EEE-TTSCEEEEE CS
    Reg_prop  10 ileDsdGrlWvGt 22 
                 i+  +dG l+v++
  KOO22956.1 159 IAIGPDGVLYVAS 171
                 78899******97 PP

  == domain 2  score: 6.7 bits;  conditional E-value: 0.0035
                 EE-TTSCEEEEES CS
    Reg_prop  11 leDsdGrlWvGte 23 
                 +   dG+lWv+++
  KOO22956.1 317 AFAEDGTLWVASY 329
                 4455******986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (351 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       223  (0.0124379); expected 358.6 (0.02)
Passed bias filter:                      211  (0.0117686); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.49u 0.25s 00:00:00.74 Elapsed: 00:00:00.43
# Mc/sec: 2452.18
//
Query:       KOO22957.1  [L=450]
Description: wasp-related protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.027   14.7   0.0      0.053   13.7   0.0    1.4  1  VPS9      Vacuolar sorting protein 9 (VPS9) domain


Domain annotation for each model (and alignments):
>> VPS9  Vacuolar sorting protein 9 (VPS9) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.0     3e-06     0.053      10      57 ..     227     288 ..     222     292 .. 0.94

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 3e-06
        VPS9  10 klseaksPreKlkcllrtieeiteav..............skseegeslgaDdlLPiliyvi 57 
                 +ls + sP   l+++++++   + ++                s +g ++gaD+l+P++ yv+
  KOO22957.1 227 RLSGCASPVAALRTFVEACAAAARCTeggiggepndleapTGSGRGVAVGADELIPLMAYVL 288
                 56778899********************************9*******************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (450 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       425  (0.0237046); expected 358.6 (0.02)
Passed bias filter:                      289  (0.0161191); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.23s 00:00:00.72 Elapsed: 00:00:00.40
# Mc/sec: 3338.68
//
Query:       KOO22958.1  [L=172]
Description: hypothetical protein Ctob_003262 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (172 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       565  (0.0315132); expected 358.6 (0.02)
Passed bias filter:                      158  (0.00881254); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.40u 0.23s 00:00:00.63 Elapsed: 00:00:00.39
# Mc/sec: 1323.39
//
Query:       KOO22959.1  [L=449]
Description: pepsinogen c [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.5e-27   96.8   0.0    8.5e-27   94.4   0.0    2.0  1  Asp       Eukaryotic aspartyl protease
    5.9e-08   33.2   0.1    1.1e-05   25.8   0.1    2.4  2  TAXi_N    Xylanase inhibitor N-terminal


Domain annotation for each model (and alignments):
>> Asp  Eukaryotic aspartyl protease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   94.4   0.0   9.5e-31   8.5e-27       2     307 ..      65     414 ..      64     419 .. 0.80

  Alignments for each domain:
  == domain 1  score: 94.4 bits;  conditional E-value: 9.5e-31
                 EEEEEEETTTTEEEEEEEETT--SEEEEBTTESTSHCHHTSS-B-GGG-TT-EE.EEEEEEEECTTSEEEEEEEEEEEEETTEEEEE........EEEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx........xxxx RF
         Asp   2 YfgeisiGtpeqkftvifDTGSsdlWVpsskckkssackshstydpskSstykk.ngkslsisYGdgsvsGflsqdtvkvggltvkn........qefg 91 
                 Y + ++iG+p+q+ +v+ DTGS  l V+s++c   +ac+ h+ + p+kSst  k +++ + ++YG+g+++     ++v++ g +             ++
  KOO22959.1  65 YTTYVGIGSPPQHISVVPDTGSYVLAVTSTNCG-DEACRAHNRFAPEKSSTDIKvESNVFLLQYGQGAITVRDTMEKVSFFGAKSSTdtindpevVSLA 162
                 999*****************************9.99***************765055556999*****9999999999998875443111111123567 PP

                 EEEEESSHHHTTSSSSEEEE-S-GGGSCGGSCCHHHHHHHTTSSSSSEEEEEE-STTSSEEEEEESSEEGGGE.EEEEEEEEESS..TSSTEEEEEEEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxx..xxxxxxxxxxxx RF
         Asp  92 eatkepgstflaakfdGiLGlgfkeisveeatpvfdnlvsqglikepvfsvylnreeeeggeivfGgvDesky.kGsltyvpvts..kgywqielesvt 187
                 + ++e+ + f++++ dGi+Glg ++ +  + t + ++++       + f++ +  + + +g  + G +D + +      y p+ +  + +w + l++v 
  KOO22959.1 163 LIQNETLIGFEYVPYDGIMGLGKRKKTELKDTAFLQDMKI------ESFTLCMG-DAKLTGDGIGGRLDMQSMlAVGNEYKPLETigEHVWGAVLDHVG 254
                 788999999*************777776667777777654......47999998.999***********876514556777888777999********* PP

                 ETTEEE..........EEEEEEEEEEETTCSSEEEEHHHHHHHHHHHTTEEEET......TCEEEEETTGGGGSEEEEEEETTEEEEEEGGGGE..EEE CS
                 xxxxxx..........xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx......xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxx RF
         Asp 188 vggktv..........lcssgcqailDtGTsllalptsivekiakaigakkses......egeyvvdCdslsslpdisftiggakitvpvselv..lke 268
                 v g+             +   c+ i+D+GT+ll++p+++v+ + + i+a   e+      +++ + +  ++  lp++++ +gg++i +p++ ++  +++
  KOO22959.1 255 VPGQPGarlcsgpsaaGTGMPCATIIDSGTTLLTFPKEVVDTLYHSIEAGCAEHdclmtlQKQETCSGPHFDALPNLELRVGGQDIVLPPRVYMgeMEV 353
                 *998766655665543444568999************************99988788877666666667799999999999999999999999844344 PP

                 SSSTTSEEEESE......................EECCTSSSEEEEHHHHTTEEEEEETTT CS
                 xxxxxxxxxxxx......................xxxxxxxxxxxxxxxxxxxxxxxxxxx RF
         Asp 269 eeseesqCilgl......................vseeegdlwiLGdvFlrsayvvfdldn 307
                 +  ++++  +g+                       ++  g++ iLG  Flr++ v f+++ 
  KOO22959.1 354 DIPTADKIKMGMfdvympeythgircvplfsaldEMTMAGPMSILGMPFLRQYAVFFNRES 414
                 4344444444444779999999999999999988889999***************999875 PP

>> TAXi_N  Xylanase inhibitor N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.8   0.1   1.2e-09   1.1e-05       1      55 [.      65     119 ..      65     126 .. 0.94
   2 !    5.0   0.0    0.0029        26     131     165 ..     176     211 ..     126     219 .. 0.79

  Alignments for each domain:
  == domain 1  score: 25.8 bits;  conditional E-value: 1.2e-09
      TAXi_N   1 YlvsisiGtppqplklvvDtGsdltWvqCkpckacssqkkpvfdpsksstykavp 55 
                 Y++ ++iG+ppq++++v DtGs ++ v+ ++c +++ ++++ f p+ksst  +v+
  KOO22959.1  65 YTTYVGIGSPPQHISVVPDTGSYVLAVTSTNCGDEACRAHNRFAPEKSSTDIKVE 119
                 99********************************9999***********987776 PP

  == domain 2  score: 5.0 bits;  conditional E-value: 0.0029
      TAXi_N 131 gadGilGLGr.gklSlvsqlaskgslgnkFsyCLss 165
                   dGi+GLG+ +k  l + +  ++   + F++C+ +
  KOO22959.1 176 PYDGIMGLGKrKKTELKDTAFLQDMKIESFTLCMGD 211
                 579******735677777777777888999999943 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (449 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       324  (0.0180713); expected 358.6 (0.02)
Passed bias filter:                      309  (0.0172346); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.50u 0.26s 00:00:00.76 Elapsed: 00:00:00.42
# Mc/sec: 3214.57
//
Query:       KOO22960.1  [L=97]
Description: hypothetical protein Ctob_003261 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (97 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1108  (0.0617993); expected 358.6 (0.02)
Passed bias filter:                      512  (0.0285571); expected 358.6 (0.02)
Passed Vit filter:                        47  (0.00262145); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.27s 00:00:00.65 Elapsed: 00:00:00.41
# Mc/sec: 705.68
//
Query:       KOO22961.1  [L=321]
Description: hypothetical protein Ctob_009958 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (321 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       384  (0.0214178); expected 358.6 (0.02)
Passed bias filter:                      324  (0.0180713); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.46u 0.26s 00:00:00.72 Elapsed: 00:00:00.44
# Mc/sec: 2188.79
//
Query:       KOO22962.1  [L=237]
Description: o-methyltransferase superfamily [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.1e-09   38.3   1.6    2.8e-09   37.9   0.3    1.7  2  Methyltransf_24  Methyltransferase domain
      2e-06   27.1   0.0    2.7e-06   26.7   0.0    1.1  1  Methyltransf_3   O-methyltransferase
  ------ inclusion threshold ------
      0.093   12.5   0.0        1.3    8.7   0.0    2.0  2  PRAI             N-(5'phosphoribosyl)anthranilate (PRA) isome
       0.13   12.0   1.5       0.34   10.6   0.1    2.0  2  Imm49            Immunity protein 49


Domain annotation for each model (and alignments):
>> Methyltransf_24  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.0       1.1   5.1e+03      79      96 ..      28      45 ..       8      65 .. 0.62
   2 !   37.9   0.3   6.3e-13   2.8e-09       2     105 ..      74     184 ..      74     185 .. 0.86

  Alignments for each domain:
  == domain 1  score: -1.5 bits;  conditional E-value: 1.1
  Methyltransf_24 79 haaeavledleallprla 96
                     h+ ++vl+d +  l+r +
       KOO22962.1 28 HSWRQVLRDHRKTLRRDS 45
                     444444444444444333 PP

  == domain 2  score: 37.9 bits;  conditional E-value: 6.3e-13
  Methyltransf_24   2 EiGvysGvstlwllralrrngagrlvavdhdpg......aeeaaalare.aglddrvrlikadseealasla..agsiDllfiDgghaaeavle 86 
                      E G  sGvs+l+++ al + ga   va+d+++g       ++++ ++++  + + +++ ++++++ a+a l   +  +D +fiD gh+ +++l 
       KOO22962.1  74 ETGFASGVSSLAIVTALAKGGA--HVAIDPFQGayhydgLRAVRSYIESaPERRLTFQHVNETASMAMAYLHtqRVCFDAFFIDDGHKFDDALV 165
                      88******************97..99******977666666678888875555556788888887777766665799***************** PP

  Methyltransf_24  87 dleallprlapggvvlfdD 105
                      +l +++++la gg ++++D
       KOO22962.1 166 ELFHAHKMLALGGALMLHD 184
                      ******************9 PP

>> Methyltransf_3  O-methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.7   0.0     6e-10   2.7e-06      10     157 ..      31     185 ..      19     203 .. 0.76

  Alignments for each domain:
  == domain 1  score: 26.7 bits;  conditional E-value: 6e-10
                     -HHHHHHHHHTTTST.TGGGS--HHHHHHHHHHHHHHT--EEEEE--TTSHHHHHHHTTS-TT-EEEEEES-HHHHHH.....HHHHHHHTT-GG CS
  Methyltransf_3  10 hellkeLreatakktdlsemevsvdegqfLslLvklvnakrvleiGvftGyslLatalalPeDGkilaididreayei.....alkfiqkagvae 99 
                      ++l++ r++  +  d + ++vs+++ + L+ +vk v+a+ + e G   G s La+  al + G  +aid  + ay+       +++i+ a+ ++
      KOO22962.1  31 RQVLRDHRKTLRRDSDSAFVQVSMNDMNTLHHVVKRVGARITGETGFASGVSSLAIVTALAKGGAHVAIDPFQGAYHYdglraVRSYIESAP-ER 124
                     3567788888888889******************************************************9888876422221579999998.78 PP

                     GEEEEES-HHHHHHHHHTSSS---EEEEEE-S-G...GGHHHHHHHHHHTEEEEEEEEEE- CS
  Methyltransf_3 100 kieliegdalkvLeelvkdkklpefDfifvDaDk...ssyvnyyeklleLvkvGgliaiDn 157
                     ++ +++ + ++ +     + ++  fD  f+D      ++ v+ ++    L   G l+  Dn
      KOO22962.1 125 RLTFQHVNETASMAMAYLHTQRVCFDAFFIDDGHkfdDALVELFHAHKMLALGGALMLHDN 185
                     899999988888877777777899******9643111233333333333444555666666 PP

>> PRAI  N-(5'phosphoribosyl)anthranilate (PRA) isomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.6   0.0     0.047   2.1e+02      12      58 ..      10      56 ..       3      69 .. 0.79
   2 ?    8.7   0.0   0.00029       1.3      99     164 ..     125     191 ..     112     199 .. 0.80

  Alignments for each domain:
  == domain 1  score: 1.6 bits;  conditional E-value: 0.047
                HHHHHHHTSSEEEEE--TTBTTB--HHHHHHHCCCS--EEEEEESSS CS
        PRAI 12 vkaavkagadelglifaesskrevseeqaqellekvpaklVGVfvNq 58
                v+   +a+ d+    ++++s r+v + + ++l++++   +V V +N 
  KOO22962.1 10 VVSLREAAGDTSADREDDHSWRQVLRDHRKTLRRDSDSAFVQVSMND 56
                555566666777777889999***************999****9995 PP

  == domain 2  score: 8.7 bits;  conditional E-value: 0.00029
                 EEEEEEE-S.SS--S-SSTT-SEEEEESSS-SSSXXXXGGGGTTSXX.TTEEEESSXXT.TTHHHHHT CS
        PRAI  99 alkvaesvd.evkearradhvdllllDsgaGGtGelldwsliskllkslkviLAGGLtp.eNvaeaik 164
                 +l +++ v+ +++ a ++ h++++ +D      G+++d  l++ + +++ + L+G L   +N + aik
  KOO22962.1 125 RLTFQH-VNeTASMAMAYLHTQRVCFDAFFIDDGHKFDDALVELFHAHKMLALGGALMLhDNWMPAIK 191
                 566666.66477788888899*******9*****************9899999998863256666665 PP

>> Imm49  Immunity protein 49
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.3   0.1      0.11   5.1e+02      78     106 ..      14      45 ..       3      63 .. 0.62
   2 ?   10.6   0.1   7.7e-05      0.34     131     167 ..     135     172 ..      96     175 .. 0.74

  Alignments for each domain:
  == domain 1  score: 0.3 bits;  conditional E-value: 0.11
       Imm49  78 rqs...gtrydeydyayidalqallddardpd 106
                 r++   +++ +e d+++ ++l+++++  r ++
  KOO22962.1  14 REAagdTSADREDDHSWRQVLRDHRKTLRRDS 45 
                 34444244556778888888888887666333 PP

  == domain 2  score: 10.6 bits;  conditional E-value: 7.7e-05
       Imm49 131 krldqlatpelr.llraLlegDeeaFeeaLeeaLeahr 167
                  ++ + + + +r ++ a+  +D+++F+ aL+e+++ah+
  KOO22962.1 135 ASMAMAYLHTQRvCFDAFFIDDGHKFDDALVELFHAHK 172
                 5566666666662689*********************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (237 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       564  (0.0314574); expected 358.6 (0.02)
Passed bias filter:                      469  (0.0261587); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.44u 0.27s 00:00:00.71 Elapsed: 00:00:00.42
# Mc/sec: 1679.76
//
Query:       KOO22963.1  [L=153]
Description: udp-galactose transporter family protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    8.6e-28   97.4   7.5      1e-27   97.2   7.5    1.0  1  Nuc_sug_transp  Nucleotide-sugar transporter
     0.0082   15.8   7.4       0.01   15.5   7.4    1.1  1  DUF4126         Domain of unknown function (DUF4126)
  ------ inclusion threshold ------
      0.048   12.9   2.1      0.049   12.8   2.1    1.2  1  UAA             UAA transporter family


Domain annotation for each model (and alignments):
>> Nuc_sug_transp  Nucleotide-sugar transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   97.2   7.5   1.7e-31     1e-27     202     314 ..       7     119 ..       2     120 .. 0.91

  Alignments for each domain:
  == domain 1  score: 97.2 bits;  conditional E-value: 1.7e-31
  Nuc_sug_transp 202 dsnv...slWirniqlallsiilalltvllkdgskisekGffkGydlvvwvvvllqavGGlvvavvvkyaDnilkgfatslaiilstvasvllld 293
                     +++v   slW+rn+ql ++++++a  tv + ++s++  +G++   d  ++++++l+a GGlvva v+ky Dn+lk+fats ++il t++sv l+d
      KOO22963.1   7 KAEVaapSLWVRNVQLCIFTLPIAAATVGW-QWSAVRAQGLVL--DAPTVTLIVLNAAGGLVVAAVIKYGDNLLKNFATSCSVILGTLISVALFD 98 
                     44433349****************998776.6********985..88889999****************************************** PP

  Nuc_sug_transp 294 lkitllFllGallviaavflY 314
                     +++t+ F+ G+llvi + f+Y
      KOO22963.1  99 FQLTMSFAWGSLLVIGSAFVY 119
                     ********************9 PP

>> DUF4126  Domain of unknown function (DUF4126)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   7.4   1.7e-06      0.01      14     109 ..      19     116 ..      18     122 .. 0.84

  Alignments for each domain:
  == domain 1  score: 15.5 bits;  conditional E-value: 1.7e-06
     DUF4126  14 rvylplLllglaarfg...liplpeglewlgspvvlgalavltlvElvadkipvvdsvldtiqtfvrpvaGallaaaaagaveldpvlkavlavlaGgl 109
                 +v l++++l +aa +    +  + ++  +l+ p+v++++  ++   +va  i ++d++l   +t  ++++G+l+++a++    l+ ++ +  ++++G++
  KOO22963.1  19 NVQLCIFTLPIAAATVgwqWSAVRAQGLVLDAPTVTLIVLNAAGGLVVAAVIKYGDNLLKNFATSCSVILGTLISVALFDFQ-LTMSFAWGSLLVIGSA 116
                 677888888888887656566677788999*****99999999999**********************************44.5566778888888865 PP

>> UAA  UAA transporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   2.1   8.3e-06     0.049     264     300 ..      85     121 ..      14     123 .. 0.80

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 8.3e-06
         UAA 264 RKfvslllSillFknpltlqhlvgtllVflglllysy 300
                   ++  l+S+ lF+ +lt+   +g+llV++++++y++
  KOO22963.1  85 SVILGTLISVALFDFQLTMSFAWGSLLVIGSAFVYVT 121
                 55666799**************************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (153 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       547  (0.0305092); expected 358.6 (0.02)
Passed bias filter:                      285  (0.015896); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.36u 0.25s 00:00:00.61 Elapsed: 00:00:00.38
# Mc/sec: 1198.88
//
Query:       KOO22964.1  [L=610]
Description: kinesin motor domain containing protein, partial [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    7.5e-83  278.2   0.0    9.1e-83  277.9   0.0    1.1  1  Kinesin         Kinesin motor domain
    8.3e-16   58.3   0.0    3.9e-15   56.1   0.0    2.0  1  Microtub_bd     Microtubule binding
    0.00087   19.5   7.0       0.15   12.3   0.2    3.8  4  HALZ            Homeobox associated leucine zipper
  ------ inclusion threshold ------
       0.09   12.9   4.0          5    7.3   0.1    3.5  3  bZIP_1          bZIP transcription factor
       0.22   12.4   5.0        4.4    8.3   0.0    2.9  2  PRKG1_interact  cGMP-dependent protein kinase interacting dom
       0.39   10.0   3.6       0.75    9.0   0.7    2.3  2  DUF4763         Domain of unknown function (DUF4763)
       0.51   11.0   6.5        8.1    7.2   0.1    3.4  3  YabA            Initiation control protein YabA
       0.73   10.1   5.3         14    5.9   0.1    2.4  2  K-box           K-box region
       0.75   10.0   9.0         19    5.5   0.1    3.4  3  TMF_TATA_bd     TATA element modulatory factor 1 TATA binding
       0.91   10.0  13.2        1.5    9.3   0.1    3.8  3  DUF4140         N-terminal domain of unknown function (DUF414
       0.91    9.5   4.8         25    4.9   0.0    3.4  3  CENP-F_leu_zip  Leucine-rich repeats of kinetochore protein C
          1    9.2  14.6       0.83    9.5   0.3    3.5  3  DivIC           Septum formation initiator
        2.6    8.3   4.7        7.6    6.8   0.2    2.9  3  JIP_LZII        JNK-interacting protein  leucine zipper II
        4.5    7.4  11.2        4.5    7.4   0.9    3.4  3  Cep57_CLD_2     Centrosome localisation domain of PPC89
        5.5    7.5  14.5         20    5.7   0.2    3.6  3  ZapB            Cell division protein ZapB
          7    6.6   9.2         24    4.9   0.7    3.5  3  GIT_CC          GIT coiled-coil Rho guanine nucleotide exchan
        9.7    6.1   8.3        4.2    7.3   3.7    2.4  2  JAKMIP_CC3      JAKMIP CC3 domain


Domain annotation for each model (and alignments):
>> Kinesin  Kinesin motor domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  277.9   0.0   8.6e-86   9.1e-83      34     333 .]      36     375 ..       8     375 .. 0.90

  Alignments for each domain:
  == domain 1  score: 277.9 bits;  conditional E-value: 8.6e-86
                 EECTTSCEEEEESEEEETTS-HHHHHHHH.HHHHHHHHHTTSEEEEEEEESTTSSHHHHHTBC.................TTTSBSHHHHHHHHHHHHH CS
     Kinesin  34 enkeeeekkfkFdkvfdeeatqeevyeet.akplvesvleGynatifaYGqtgsGKTyTmegk.................eeeeeGiipraleelFesi 114
                  nk+   +++  d+v+ + + q+e+++     +lv s+++Gy at+faYGqtgsGKT+Tmeg                  ++e+ G++pr+l+ lFe +
  KOO22964.1  36 VNKQGGISNYDADHVCPPGTAQDEIFRLGgLTSLVGSAVDGYTATVFAYGQTGSGKTFTMEGYdykrasagkgpqvdfdtPHERLGLVPRTLRALFEAV 134
                 456677789*****************9753789**********************************************99999*************** PP

                 HHCTTTH...EEEEEEEEEEEEEETTEEEETTSTTT..............TSTSSEBEEEECTTSCCEEETTS--EEESSHHHHHHHHHHHHHHHTSTT CS
     Kinesin 115 kkekeek...ekefsvkvsylEiYneeiyDLLeskk..............skkkkklkiredskkgevyvkgltevevksaeevlellekgeknrkvae 196
                 +++++++     +++v + +++iY+e++ DLL++ +              +   + lk+r +++k  ++v++l  +e+  aee+  l+++g +n++vae
  KOO22964.1 135 NARNASAtpgAPRLRVMCHFVQIYKEQVLDLLNPATssssaapifgggsgTGAPRGLKLRWSPEKD-FHVDNLYVEELGGAEEAEALFQRGVSNKRVAE 232
                 *9998765557899********************9999999***999988555568*******976.******************************** PP

                 SSCTSHHCCSEEEEEEEEEEEETTTTTCEEEEEEEEEEEEEEECCCHHHHSS.TCHHHHHHHHHHHHHHHHHHHHHHHHHHT......CCTSTSCGGGS CS
     Kinesin 197 tklneeSSRSHavftitleqknlkeeteekvkisklnLvDLAGsErasktga.aegerlkEaaniNkSLlaLgrvisaLaek......kkskhipYRdS 288
                 t++n++SSRSH++ft+ ++q  +++ ++     ++l+LvDLAGsEr+++  + +++  + E+ +iNkSL++L++vi aL++       k ++h+pYRdS
  KOO22964.1 233 TRMNTASSRSHCMFTLLVQQLATDRAEK-VLAEGRLTLVDLAGSERQQALLDaTSKAAMLESVQINKSLFTLRKVILALSDAssdgsaKVASHVPYRDS 330
                 *********************9887666.6799*************9987765677889***********************9***9999********* PP

                 HHHHHTGGGHSSSSEEEEEEEE-TBGGGHHHHHHHHHHHHHHCTT CS
     Kinesin 289 kLTrlLqdsLgGnsktlmivtvspssenleetlstlkfaerakei 333
                  LTrlL+++LgGns+tlm++++sps+ ++ee+ stl +a+ra+ i
  KOO22964.1 331 TLTRLLKHALGGNSHTLMLACISPSDLQAEENASTLAYAARARAI 375
                 ******************************************986 PP

>> Microtub_bd  Microtubule binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.1   0.0   3.7e-18   3.9e-15      22     149 .]       3     166 ..       2     166 .. 0.85

  Alignments for each domain:
  == domain 1  score: 56.1 bits;  conditional E-value: 3.7e-18
                  -EEEEEEECCCS-T....EEEETTT............TTTEEEE-SEEEECTTHCCCCCC..CCHHHHHHHHTT--EEEEEEES.............. CS
  Microtub_bd  22 iRvfarvrpelesek...akikfpe.........eekkkkkefsFdrvfeseseqeevfe..eisqlvqsaldgynvcifaygqTGsGKtyTmeg... 102
                  + v +r rp l +e    ++ ++ +         +++    ++  d+v ++ + q+e+f    ++ lv sa+dgy  ++faygqTGsGKt+Tmeg   
   KOO22964.1   3 VKVLVRARPLLPEEVssgCTTNYLSfgpnriglvNKQGGISNYDADHVCPPGTAQDEIFRlgGLTSLVGSAVDGYTATVFAYGQTGSGKTFTMEGydy 100
                  56788888888887555555555546667888887889999*****************975589********************************** PP

                  ....................ST-HCHHHHHHHHHHCCTS....CCCCEEEEEEEEEEESS-EEETT CS
  Microtub_bd 103 ...............eeeeagmipraveeifetiselke....kgwkyeielqfveiynekvqDlL 149
                                  +e+ g +pr+++++fe ++ ++        + ++ ++fv+iy e+v DlL
   KOO22964.1 101 krasagkgpqvdfdtPHERLGLVPRTLRALFEAVNARNAsatpGAPRLRVMCHFVQIYKEQVLDLL 166
                  *****9999999886678889***********99988652222346899***************98 PP

>> HALZ  Homeobox associated leucine zipper
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.0       6.4   6.7e+03       9      21 ..     126     138 ..     125     140 .. 0.80
   2 !    8.0   0.1    0.0032       3.4      19      39 ..     388     408 ..     387     411 .. 0.80
   3 !   12.3   0.2   0.00014      0.15       9      32 ..     473     496 ..     465     501 .. 0.86
   4 ?    0.0   0.1      0.96     1e+03      23      35 ..     543     555 ..     538     557 .. 0.86

  Alignments for each domain:
  == domain 1  score: -2.6 bits;  conditional E-value: 6.4
        HALZ   9 vLKasYdaLksdy 21 
                 +L+a ++a  +++
  KOO22964.1 126 TLRALFEAVNARN 138
                 7999999998876 PP

  == domain 2  score: 8.0 bits;  conditional E-value: 0.0032
        HALZ  19 sdydsLkkenekLkaelqeLk 39 
                 +++++L+ e e+Lkae+q+L 
  KOO22964.1 388 AQVNQLRSEIERLKAEIQRLQ 408
                 577888899999999999885 PP

  == domain 3  score: 12.3 bits;  conditional E-value: 0.00014
        HALZ   9 vLKasYdaLksdydsLkkenekLk 32 
                  L++ +daL+++ d+L++e   L+
  KOO22964.1 473 QLRQAFDALAAKRDALEAEHGLLL 496
                 7******************87776 PP

  == domain 4  score: 0.0 bits;  conditional E-value: 0.96
        HALZ  23 sLkkenekLkael 35 
                 +L++en  L+ +l
  KOO22964.1 543 ALRHENAHLRDQL 555
                 799******9998 PP

>> bZIP_1  bZIP transcription factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.3   0.1    0.0047         5      42      62 ..     390     410 ..     387     412 .. 0.83
   2 ?    3.0   0.1       0.1   1.1e+02      35      60 ..     464     489 ..     455     510 .. 0.86
   3 ?    1.8   0.1      0.25   2.6e+02      32      51 ..     538     557 ..     531     560 .. 0.86

  Alignments for each domain:
  == domain 1  score: 7.3 bits;  conditional E-value: 0.0047
                 HHHHHHHHHHHHHHHHHHHHH CS
      bZIP_1  42 NksLkseleelkkevekLksk 62 
                   +L+se+e+lk e++ L++ 
  KOO22964.1 390 VNQLRSEIERLKAEIQRLQMI 410
                 567*************99876 PP

  == domain 2  score: 3.0 bits;  conditional E-value: 0.1
                 HHHHHHHHHHHHHHHHHHHHHHHHHH CS
      bZIP_1  35 vkaLekeNksLkseleelkkevekLk 60 
                 +k+L + N++L++  + l+ +++ L+
  KOO22964.1 464 AKQLAATNTQLRQAFDALAAKRDALE 489
                 68999999999999999988887776 PP

  == domain 3  score: 1.8 bits;  conditional E-value: 0.25
                 HHHHHHHHHHHHHHHHHHHH CS
      bZIP_1  32 errvkaLekeNksLkselee 51 
                 +++v aL  eN+ L+++l++
  KOO22964.1 538 AQEVVALRHENAHLRDQLGT 557
                 589999*********99875 PP

>> PRKG1_interact  cGMP-dependent protein kinase interacting domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.3   0.0    0.0042       4.4      45      91 ..     359     405 ..     337     411 .. 0.83
   2 ?    3.4   2.3      0.14   1.5e+02      10      88 ..     468     553 ..     449     557 .. 0.63

  Alignments for each domain:
  == domain 1  score: 8.3 bits;  conditional E-value: 0.0042
  PRKG1_interact  45 vskrssllelekrerrslerkiseleeelkeleeLraenqrLkdEng 91 
                      ++++s+l    r r  ++  +++++    ++++Lr+e +rLk+E +
      KOO22964.1 359 AEENASTLAYAARARAITNAPVMNTDPHTAQVNQLRSEIERLKAEIQ 405
                     45666777778888888888999999999**************9965 PP

  == domain 2  score: 3.4 bits;  conditional E-value: 0.14
  PRKG1_interact  10 keenerLkreLeelekelselkseleklkqq...rqesvskrssllelekrerrslerkiseleeel....keleeLraenqrLkd 88 
                      + n +L++  + l  + + l++e   l ++   ++e+v   +  l +e+  +   +   +++e++l    +e+ +Lr+en+ L+d
      KOO22964.1 468 AATNTQLRQAFDALAAKRDALEAEHGLLLVEntqQRERVGLLELALAMESYPSAPHDSLHAQIEQQLraaaQEVVALRHENAHLRD 553
                     45566666666666555555555543333221113345555555566677666667777777777776666889999****99998 PP

>> DUF4763  Domain of unknown function (DUF4763)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.9   0.1      0.22   2.4e+02     210     230 ..     387     407 ..     374     412 .. 0.50
   2 ?    9.0   0.7   0.00072      0.75      59     120 ..     500     559 ..     493     563 .. 0.72

  Alignments for each domain:
  == domain 1  score: 0.9 bits;  conditional E-value: 0.22
     DUF4763 210 kqdrrdaskelkelkkflkkl 230
                 +++ +++++e+++lk  ++ l
  KOO22964.1 387 TAQVNQLRSEIERLKAEIQRL 407
                 334444444444444333333 PP

  == domain 2  score: 9.0 bits;  conditional E-value: 0.00072
     DUF4763  59 ekiKqrvlelrskLalnvpecPei.decvdedlelelltseqpeileLqrnnhkLrqqlaelq 120
                  + ++rv +l+  La++    P++  +++  ++e++l     +e+  L+++n+ Lr ql  +q
  KOO22964.1 500 TQQRERVGLLELALAME--SYPSApHDSLHAQIEQQLRA-AAQEVVALRHENAHLRDQLGTAQ 559
                 57799999999888865..45654244444444444444.77*****************8877 PP

>> YabA  Initiation control protein YabA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.9   0.2      0.16   1.7e+02       2      29 ..     382     409 ..     381     413 .. 0.70
   2 ?    2.5   0.2      0.22   2.3e+02      11      52 ..     465     506 ..     455     525 .. 0.71
   3 ?    7.2   0.1    0.0076       8.1      25      53 ..     528     556 ..     513     582 .. 0.83

  Alignments for each domain:
  == domain 1  score: 2.9 bits;  conditional E-value: 0.16
                 -HHHHHHHHHHHHHHHHHHHHHHHHHHH CS
        YabA   2 dkkelfdkleeleeqleelleeleelke 29 
                 +++  ++++++l +++e+l++e+++l++
  KOO22964.1 382 NTDPHTAQVNQLRSEIERLKAEIQRLQM 409
                 5555677888888888888888888876 PP

  == domain 2  score: 2.5 bits;  conditional E-value: 0.22
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
        YabA  11 eeleeqleelleeleelkeelaelleenaeLeleneklrerl 52 
                 ++l  + ++l + +++l ++  +l  e+  L +en++ rer+
  KOO22964.1 465 KQLAATNTQLRQAFDALAAKRDALEAEHGLLLVENTQQRERV 506
                 345555556666667777777777888888888888888876 PP

  == domain 3  score: 7.2 bits;  conditional E-value: 0.0076
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHX CS
        YabA  25 eelkeelaelleenaeLeleneklrerle 53 
                 ++++++l +  +e  +L+ en +lr++l 
  KOO22964.1 528 AQIEQQLRAAAQEVVALRHENAHLRDQLG 556
                 5789999999****************993 PP

>> K-box  K-box region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.9   0.1     0.014        14       5      26 ..     387     408 ..     382     411 .. 0.82
   2 ?    5.4   1.4     0.019        20       8      92 ..     471     555 ..     464     556 .. 0.93

  Alignments for each domain:
  == domain 1  score: 5.9 bits;  conditional E-value: 0.014
       K-box   5 qdeeeelkqEvskLkkeieklq 26 
                 + + ++l++E+++Lk+ei++lq
  KOO22964.1 387 TAQVNQLRSEIERLKAEIQRLQ 408
                 44677899***********999 PP

  == domain 2  score: 5.4 bits;  conditional E-value: 0.019
       K-box   8 eeelkqEvskLkkeieklqrsqRkllGedleslslkeLqqLEqqLekslkkiRsrKeqllleeieelkkkekqleeenkeLrekl 92 
                 + +l+q  + L ++ + l++++  ll e+ ++ +   L +L   +e+  +  ++  +  ++++++   ++   l+ en +Lr++l
  KOO22964.1 471 NTQLRQAFDALAAKRDALEAEHGLLLVENTQQRERVGLLELALAMESYPSAPHDSLHAQIEQQLRAAAQEVVALRHENAHLRDQL 555
                 45699999**************************************************************************986 PP

>> TMF_TATA_bd  TATA element modulatory factor 1 TATA binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.5   0.1     0.018        19       7      32 ..     383     408 ..     377     412 .. 0.74
   2 ?    3.8   0.7     0.061        64      15      62 ..     458     505 ..     444     518 .. 0.78
   3 ?    4.4   0.2     0.039        41      36      62 ..     528     554 ..     520     560 .. 0.83

  Alignments for each domain:
  == domain 1  score: 5.5 bits;  conditional E-value: 0.018
  TMF_TATA_bd   7 agpsvqlverlsseirrlEgElaslk 32 
                  + p++  v++l sei rl +E++ l+
   KOO22964.1 383 TDPHTAQVNQLRSEIERLKAEIQRLQ 408
                  56677778888888888888888776 PP

  == domain 2  score: 3.8 bits;  conditional E-value: 0.061
  TMF_TATA_bd  15 erlsseirrlEgElaslkeelerleaerdeareeivklmkeneelkel 62 
                  +r  +  ++l +  ++l++    l+a+rd++++e   l+ en +++e 
   KOO22964.1 458 QRALALAKQLAATNTQLRQAFDALAAKRDALEAEHGLLLVENTQQRER 505
                  5555556788888899******************99999999888876 PP

  == domain 3  score: 4.4 bits;  conditional E-value: 0.039
  TMF_TATA_bd  36 erleaerdeareeivklmkeneelkel 62 
                  +++e++ ++a++e+v+l +en  l+++
   KOO22964.1 528 AQIEQQLRAAAQEVVALRHENAHLRDQ 554
                  689999999999999999999988875 PP

>> DUF4140  N-terminal domain of unknown function (DUF4140)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3   0.1    0.0014       1.5      47      87 ..     370     410 ..     343     413 .. 0.78
   2 ?    1.5   2.1      0.39   4.1e+02      67      94 ..     464     491 ..     440     495 .. 0.53
   3 ?    4.7   0.6     0.038        40      63      96 ..     522     556 ..     496     560 .. 0.62

  Alignments for each domain:
  == domain 1  score: 9.3 bits;  conditional E-value: 0.0014
     DUF4140  47 atildvqvervpnreaeeeelkalraeleeledelaalede 87 
                 a+   ++ + v n+++ ++++++lr+e+e+l++e+++l+  
  KOO22964.1 370 ARARAITNAPVMNTDPHTAQVNQLRSEIERLKAEIQRLQMI 410
                 55556666667778888878999999999999999999865 PP

  == domain 2  score: 1.5 bits;  conditional E-value: 0.39
     DUF4140  67 lkalraeleeledelaaledelaaaear 94 
                  k+l a+ ++l+++ +al ++++a+ea+
  KOO22964.1 464 AKQLAATNTQLRQAFDALAAKRDALEAE 491
                 4455555555555555555555555555 PP

  == domain 3  score: 4.7 bits;  conditional E-value: 0.038
     DUF4140  63 eeee.lkalraeleeledelaaledelaaaearla 96 
                 + ++  ++++++l+++ +e  al+ e a ++++l 
  KOO22964.1 522 PHDSlHAQIEQQLRAAAQEVVALRHENAHLRDQLG 556
                 44443556666666666666666666666666553 PP

>> CENP-F_leu_zip  Leucine-rich repeats of kinetochore protein Cenp-F/LEK1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.3   0.0     0.071        75      73      93 ..     388     408 ..     379     414 .. 0.57
   2 ?    0.3   1.1      0.62   6.5e+02      52     100 ..     462     510 ..     444     517 .. 0.58
   3 ?    4.9   0.0     0.024        25      63      93 ..     529     559 ..     521     565 .. 0.88

  Alignments for each domain:
  == domain 1  score: 3.3 bits;  conditional E-value: 0.071
  CENP-F_leu_zip  73 ldLvalrsekeeLekelqkkq 93 
                     +++++lrse e L+ e+q  q
      KOO22964.1 388 AQVNQLRSEIERLKAEIQRLQ 408
                     444555555555555555444 PP

  == domain 2  score: 0.3 bits;  conditional E-value: 0.62
  CENP-F_leu_zip  52 aevetlkeeieelaeelreleldLvalrsekeeLekelqkkqervseLe 100
                     a +++l +   +l++    l ++ +al  e   L  e  +++erv  Le
      KOO22964.1 462 ALAKQLAATNTQLRQAFDALAAKRDALEAEHGLLLVENTQQRERVGLLE 510
                     3444555555555555555555555555555555556666666665555 PP

  == domain 3  score: 4.9 bits;  conditional E-value: 0.024
  CENP-F_leu_zip  63 elaeelreleldLvalrsekeeLekelqkkq 93 
                     +++++lr   +++valr e+ +L  +l + q
      KOO22964.1 529 QIEQQLRAAAQEVVALRHENAHLRDQLGTAQ 559
                     6778**********************99877 PP

>> DivIC  Septum formation initiator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   0.3   0.00079      0.83      30      51 ..     387     408 ..     382     412 .. 0.77
   2 ?    2.7   1.9     0.099     1e+02      20      46 ..     465     491 ..     443     496 .. 0.79
   3 ?    4.1   0.8     0.036        38      21      46 ..     529     554 ..     526     558 .. 0.87

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 0.00079
                 HHHHHHHHHHHHHHHHHHCC-X CS
       DivIC  30 qaelaklkaeneeLeaevkdLk 51 
                 +a++++l+ e+e+L+ae+++L+
  KOO22964.1 387 TAQVNQLRSEIERLKAEIQRLQ 408
                 6778888888888888888773 PP

  == domain 2  score: 2.7 bits;  conditional E-value: 0.099
                 HHHHHHHHHHHHHHHHHHHHHHHHHHH CS
       DivIC  20 kqlkqeiaalqaelaklkaeneeLeae 46 
                 kql +  ++l +  ++l a++++Leae
  KOO22964.1 465 KQLAATNTQLRQAFDALAAKRDALEAE 491
                 567777778888888888888888887 PP

  == domain 3  score: 4.1 bits;  conditional E-value: 0.036
                 HHHHHHHHHHHHHHHHHHHHHHHHHH CS
       DivIC  21 qlkqeiaalqaelaklkaeneeLeae 46 
                 q++q++ a  +e+++l+ en+ L ++
  KOO22964.1 529 QIEQQLRAAAQEVVALRHENAHLRDQ 554
                 78999999999999999999999876 PP

>> JIP_LZII  JNK-interacting protein  leucine zipper II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.8   0.2    0.0072       7.6      33      55 ..     388     410 ..     384     413 .. 0.90
   2 ?    2.0   0.3      0.22   2.3e+02      16      49 ..     466     499 ..     455     510 .. 0.65
   3 ?   -2.0   0.0         4   4.3e+03       6      18 ..     540     552 ..     532     558 .. 0.61

  Alignments for each domain:
  == domain 1  score: 6.8 bits;  conditional E-value: 0.0072
    JIP_LZII  33 arvdeLtsereiLreEleslqka 55 
                 a+v +L se e L+ E+++lq++
  KOO22964.1 388 AQVNQLRSEIERLKAEIQRLQMI 410
                 7999**************99986 PP

  == domain 2  score: 2.0 bits;  conditional E-value: 0.22
    JIP_LZII  16 eLletknaLnvvkddLIarvdeLtsereiLreEl 49 
                 +L +t   L  + d L a+ d L  e+  L  E+
  KOO22964.1 466 QLAATNTQLRQAFDALAAKRDALEAEHGLLLVEN 499
                 5555555555555666666666666666555555 PP

  == domain 3  score: -2.0 bits;  conditional E-value: 4
    JIP_LZII   6 evenLikENteLl 18 
                 ev  L +EN+ L+
  KOO22964.1 540 EVVALRHENAHLR 552
                 4444445555444 PP

>> Cep57_CLD_2  Centrosome localisation domain of PPC89
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.1   0.1     0.023        24      47      63 ..     390     406 ..     387     410 .. 0.71
   2 ?   -0.7   0.6       1.5   1.6e+03       2      18 ..     468     484 ..     453     504 .. 0.57
   3 ?    7.4   0.9    0.0042       4.5      35      61 ..     529     555 ..     524     560 .. 0.88

  Alignments for each domain:
  == domain 1  score: 5.1 bits;  conditional E-value: 0.023
  Cep57_CLD_2  47 lneLkaevealrkELke 63 
                  +n+L++e e+l+ E + 
   KOO22964.1 390 VNQLRSEIERLKAEIQR 406
                  67888888888888654 PP

  == domain 2  score: -0.7 bits;  conditional E-value: 1.5
  Cep57_CLD_2   2 eaevktLqnrLdsltrk 18 
                  +a++++L+   d l  k
   KOO22964.1 468 AATNTQLRQAFDALAAK 484
                  33444444444433333 PP

  == domain 3  score: 7.4 bits;  conditional E-value: 0.0042
  Cep57_CLD_2  35 salrqLgvAyeelneLkaevealrkEL 61 
                    ++qL+ A +e+  L+ e+ +lr +L
   KOO22964.1 529 QIEQQLRAAAQEVVALRHENAHLRDQL 555
                  5689********************987 PP

>> ZapB  Cell division protein ZapB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.7   0.2     0.019        20      20      38 ..     390     408 ..     387     417 .. 0.64
   2 ?    4.2   3.4     0.056        59      14      53 ..     465     504 ..     441     509 .. 0.89
   3 ?    3.4   0.3       0.1   1.1e+02       8      33 ..     529     554 ..     525     561 .. 0.67

  Alignments for each domain:
  == domain 1  score: 5.7 bits;  conditional E-value: 0.019
        ZapB  20 itlLqmeieeLkeeneelk 38 
                 + +L+ eie+Lk+e + l+
  KOO22964.1 390 VNQLRSEIERLKAEIQRLQ 408
                 4556666666666655554 PP

  == domain 2  score: 4.2 bits;  conditional E-value: 0.056
        ZapB  14 qkaidtitlLqmeieeLkeeneelkeenreleeeneqlke 53 
                 +++  t t+L++  ++L ++  +l+ e   l  en q +e
  KOO22964.1 465 KQLAATNTQLRQAFDALAAKRDALEAEHGLLLVENTQQRE 504
                 5677899999999999999999999999999999999887 PP

  == domain 3  score: 3.4 bits;  conditional E-value: 0.1
        ZapB   8 qLEskiqkaidtitlLqmeieeLkee 33 
                 q E++  +a +++ +L+ e++ L+ +
  KOO22964.1 529 QIEQQLRAAAQEVVALRHENAHLRDQ 554
                 55666666666777777777666654 PP

>> GIT_CC  GIT coiled-coil Rho guanine nucleotide exchange factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.1   0.3     0.084        89      40      57 ..     391     408 ..     385     411 .. 0.75
   2 ?    2.1   0.1      0.17   1.8e+02      32      59 ..     464     491 ..     454     495 .. 0.79
   3 ?    4.9   0.7     0.023        24      40      66 .]     528     554 ..     525     554 .. 0.93

  Alignments for each domain:
  == domain 1  score: 3.1 bits;  conditional E-value: 0.084
      GIT_CC  40 tslsdelrlLQskvqkLq 57 
                 ++l  e+++L  ++q+Lq
  KOO22964.1 391 NQLRSEIERLKAEIQRLQ 408
                 478888888888888887 PP

  == domain 2  score: 2.1 bits;  conditional E-value: 0.17
      GIT_CC  32 iqqLlkvNtslsdelrlLQskvqkLqae 59 
                  +qL + Nt+l +    L  k + L+ae
  KOO22964.1 464 AKQLAATNTQLRQAFDALAAKRDALEAE 491
                 5789999999999999998888888877 PP

  == domain 3  score: 4.9 bits;  conditional E-value: 0.023
      GIT_CC  40 tslsdelrlLQskvqkLqaeNaqlrdq 66 
                 ++++++lr   ++v  L  eNa lrdq
  KOO22964.1 528 AQIEQQLRAAAQEVVALRHENAHLRDQ 554
                 6899*********************97 PP

>> JAKMIP_CC3  JAKMIP CC3 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.3   3.7     0.004       4.2      99     183 ..     379     489 ..     355     510 .. 0.81
   2 ?   -1.9   6.2       2.6   2.8e+03      71     143 ..     459     525 ..     430     559 .. 0.51

  Alignments for each domain:
  == domain 1  score: 7.3 bits;  conditional E-value: 0.004
  JAKMIP_CC3  99 geldaerelkareqleselrktkskikdLeeaLaqk.............................GqdskwveekQalikrnqeLvekikkleeeeskL 168
                   ++   +  + +ql+se+++ k++i+ L+  ++                                ++    +++ a ++r   L    k+l +++++L
  KOO22964.1 379 PVMNTDPHTAQVNQLRSEIERLKAEIQRLQMIIELGglaaagagaaggahgtdpcshqlligprlAKEAAAAQQQGAALQRALAL---AKQLAATNTQL 474
                 456777778889******************9999889999999****99999999999999999999999999999889998888...78899999999 PP

  JAKMIP_CC3 169 kqeiqdlrdqnelLE 183
                 +q  ++l  +++ LE
  KOO22964.1 475 RQAFDALAAKRDALE 489
                 999999999998888 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 2.6
  JAKMIP_CC3  71 eselrfrqLlaeyqalqrayalLreklggeldaerelkareqleselrktkskikdLeeaLaqkGqdskwvee 143
                  +    +qL a + +l++a+  L  k    l+ae+ l     l  e  + + ++  Le aLa +   s   + 
  KOO22964.1 459 RALALAKQLAATNTQLRQAFDALAAKR-DALEAEHGL-----LLVENTQQRERVGLLELALAMESYPSAPHDS 525
                 333344677788888888887776555.233443333.....4444555666677777777766433333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (610 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1031  (0.0575046); expected 358.6 (0.02)
Passed bias filter:                      642  (0.0358079); expected 358.6 (0.02)
Passed Vit filter:                        92  (0.00513135); expected 17.9 (0.001)
Passed Fwd filter:                        29  (0.00161749); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              17  [number of targets reported over threshold]
# CPU time: 0.69u 0.24s 00:00:00.93 Elapsed: 00:00:00.41
# Mc/sec: 4446.91
//
Query:       KOO22965.1  [L=371]
Description: methyltransferase type 11 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.6e-12   46.8   0.0    8.5e-12   45.6   0.0    1.8  1  Methyltransf_11  Methyltransferase domain
    2.8e-09   37.6   0.0    6.5e-09   36.4   0.0    1.6  1  Methyltransf_25  Methyltransferase domain
    1.2e-06   28.5   0.0    1.9e-06   27.9   0.0    1.3  1  Methyltransf_23  Methyltransferase domain
    6.4e-05   22.8   0.0     0.0001   22.1   0.0    1.3  1  Methyltransf_31  Methyltransferase domain
    0.00022   20.6   0.0    0.00053   19.4   0.0    1.5  1  Ubie_methyltran  ubiE/COQ5 methyltransferase family
     0.0011   19.7   0.0     0.0022   18.7   0.0    1.5  1  Methyltransf_12  Methyltransferase domain
  ------ inclusion threshold ------
      0.019   14.8   0.0      0.032   14.1   0.0    1.3  1  Methyltransf_8   Hypothetical methyltransferase
      0.023   14.0   0.0       0.04   13.2   0.0    1.3  1  CMAS             Mycolic acid cyclopropane synthetase
       0.09   12.5   0.0       0.22   11.3   0.0    1.6  2  DUF4538          Domain of unknown function (DUF4538)
      0.098   11.6   1.7       0.17   10.8   1.7    1.4  1  Herpes_DNAp_acc  Herpes DNA replication accessory factor
       0.12   10.9   0.0       0.17   10.4   0.0    1.1  1  Methyltransf_29  Putative S-adenosyl-L-methionine-dependent m


Domain annotation for each model (and alignments):
>> Methyltransf_11  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.6   0.0   5.2e-15   8.5e-12      48      94 ..     173     222 ..     116     224 .. 0.89

  Alignments for each domain:
  == domain 1  score: 45.6 bits;  conditional E-value: 5.2e-15
                      TTEECCC.TSS-TT-EEEEEEES-CCC-..CCHHHHHHHHHHHEEEEEEE CS
  Methyltransf_11  48 vvadaek.lpfednsfDlvvssevlhhv..edpekalkeiaRvLkpgGll 94 
                      +++da +  pfed+sfD+v+s ++++h+   d + +l+e++RvL+pgG++
       KOO22965.1 173 LRQDAGHrWPFEDGSFDIVYSEHMFEHIlpMDGATFLREMYRVLRPGGIM 222
                      445555427********************99*****************96 PP

>> Methyltransf_25  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.4   0.0     4e-12   6.5e-09      51      97 .]     174     220 ..     163     220 .. 0.87

  Alignments for each domain:
  == domain 1  score: 36.4 bits;  conditional E-value: 4e-12
                      EESBCCGBSSSTTTEEEEEEESTGGGSSHHHHHHHHHHHHHHEEEEE CS
  Methyltransf_25  51 vqgdaedlpfedgsfDlvvssgalhhlsdedlekalkeiarvLkpgG 97 
                      +q   +++pfedgsfD+v+s ++++h+ + d +++l+e++rvL+pgG
       KOO22965.1 174 RQDAGHRWPFEDGSFDIVYSEHMFEHILPMDGATFLREMYRVLRPGG 220
                      4444589*************877***888999**************9 PP

>> Methyltransf_23  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.9   0.0   1.1e-09   1.9e-06      70     159 ..     175     294 ..      95     299 .. 0.73

  Alignments for each domain:
  == domain 1  score: 27.9 bits;  conditional E-value: 1.1e-09
  Methyltransf_23  70 qfdeqeaaepqgkfdlIvlrevlehvp..dppellrqiatllkpgGylllseplasl.......kedrllld...................... 132
                      q   + +++++g+fd++++ +++eh+   d +  lr +++ l+pgG + +++p+ +          ++ +l+                      
       KOO22965.1 175 QDAGHRWPFEDGSFDIVYSEHMFEHILpmDGATFLREMYRVLRPGGIMRVTTPDLEKylvgyvqRKENNFLQehaarfppmgklgppytaativ 268
                      3444589999*****************78899********************976667888776344444444555555555555555554444 PP

  Methyltransf_23 133 wlylvpagrhisffsarslkelleeaG 159
                      +   ++  +h+ +++ +++  ++ +aG
       KOO22965.1 269 NNIFRNY-EHRWVYDFEEFVACAAKAG 294
                      3444555.9999999999988888888 PP

>> Methyltransf_31  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.1   0.0   6.3e-08    0.0001      65     127 ..     179     242 ..     172     280 .. 0.81

  Alignments for each domain:
  == domain 1  score: 22.1 bits;  conditional E-value: 6.3e-08
  Methyltransf_31  65 e.leklledekfDlilsnevl..naladpdkileeiervlkpggilliedprllaelpakveeesk 127
                      +  +  +ed +fD++ s   +   +  d + +l+e+ rvl+pggi+ +++p+l++ l + v+++++
       KOO22965.1 179 HrWP--FEDGSFDIVYSEHMFehILPMDGATFLREMYRVLRPGGIMRVTTPDLEKYLVGYVQRKEN 242
                      5567..99**********9997666679999*********************77777677777776 PP

>> Ubie_methyltran  ubiE/COQ5 methyltransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.4   0.0   3.2e-07   0.00053     106     151 ..     177     224 ..     170     238 .. 0.85

  Alignments for each domain:
  == domain 1  score: 19.4 bits;  conditional E-value: 3.2e-07
                      -TTT-TTS-T-EEEEEEES-GGG-..S-HHHHHHHHHHHEEEEEEEEE CS
  Ubie_methyltran 106 naeeLpfeddsfDvvtvsfGlrnv..tDklkaLkeayrvlkpGGrlvv 151
                       + + pfed+sfD+v   + +  +   D  + L+e+yrvl+pGG++ v
       KOO22965.1 177 AGHRWPFEDGSFDIVYSEHMFEHIlpMDGATFLREMYRVLRPGGIMRV 224
                      67889**********998888776436999**************9876 PP

>> Methyltransf_12  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.7   0.0   1.4e-06    0.0022      64      98 ..     183     221 ..     164     222 .. 0.82

  Alignments for each domain:
  == domain 1  score: 18.7 bits;  conditional E-value: 1.4e-06
  Methyltransf_12  64 g..ssfDlvvasnvlhhl..kdirevldnirklLkpgGr 98 
                         +sfD+v++ + ++h+   d + +l++++++L+pgG+
       KOO22965.1 183 FedGSFDIVYSEHMFEHIlpMDGATFLREMYRVLRPGGI 221
                      1457**************7666679*************7 PP

>> Methyltransf_8  Hypothetical methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   0.0     2e-05     0.032     115     157 ..     180     225 ..     169     230 .. 0.80

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 2e-05
                     S-S--TT-EEEEE...EES---SS-HHHHHHHHHHHEEEEEEEEEE CS
  Methyltransf_8 115 kvPledesvdvav...fclslmgtnladflkeanrvlkvGGllkva 157
                     + P ed+s d++    +   ++  + a+fl+e++rvl++GG++ v+
      KOO22965.1 180 RWPFEDGSFDIVYsehMFEHILPMDGATFLREMYRVLRPGGIMRVT 225
                     6799******97522123456778899***************9985 PP

>> CMAS  Mycolic acid cyclopropane synthetase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.0   2.5e-05      0.04     125     169 ..     185     229 ..     178     267 .. 0.81

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 2.5e-05
                 ----SEEEEES-GGGTSGGGHHHHHHHHHHHS-TT-EEEEEEEEE CS
        CMAS 125 dekvdrvvsvgafehvgkenydtffkklkkllkedGllllhtits 169
                 d+ +d v s  +feh+     +tf ++++++l+++G++ + t   
  KOO22965.1 185 DGSFDIVYSEHMFEHILPMDGATFLREMYRVLRPGGIMRVTTPDL 229
                 459***********************************9877554 PP

>> DUF4538  Domain of unknown function (DUF4538)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   0.00013      0.22       1      43 [.       1      43 [.       1      48 [. 0.92
   2 ?   -3.7   0.0       6.5   1.1e+04      43      53 ..     292     302 ..     291     303 .. 0.82

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00013
     DUF4538  1 lrglkyvllvggvvgliglalYPiiiaPllhpeeYkkiQkvnr 43
                +rg k+ l   ++vg     lYP + aP+++   ++++Q+  +
  KOO22965.1  1 MRGPKVQLTAMAIVGCAYCLLYPAFAAPVVDMTSFQEQQEQHQ 43
                699************************************9655 PP

  == domain 2  score: -3.7 bits;  conditional E-value: 6.5
     DUF4538  43 ragikqeeiQP 53 
                 +agi +e++ +
  KOO22965.1 292 KAGIPKEAVTH 302
                 799***99865 PP

>> Herpes_DNAp_acc  Herpes DNA replication accessory factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   1.7   0.00011      0.17     292     351 ..      26      84 ..      19     111 .. 0.80

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00011
                      ---XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX........... CS
  Herpes_DNAp_acc 292 aaeevkaaataeepedsqevssslsdsrrkpespspdsPprtpelPaspledkeedaasd 351
                      aa+ v++++ +e++e+ q+  + l+d    +++ sp  Pp  ++ P +pl+ +e  ++ +
       KOO22965.1  26 AAPVVDMTSFQEQQEQHQHKADALPDGSASSSTDSPP-PPPARAAPLEPLSSHEYHCKEG 84 
                      67789999******************99999999998.6667789999988888776655 PP

>> Methyltransf_29  Putative S-adenosyl-L-methionine-dependent methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.0    0.0001      0.17     172     226 ..     178     240 ..     171     252 .. 0.76

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.0001
  Methyltransf_29 172 tkrlpyPsrsfdlihCsrCridwteedg.illlevdRvlRpgGyfvlsappvy.......erk 226
                       +r p+   sfd++       +    dg ++l e+ RvlRpgG + +++p+++       +rk
       KOO22965.1 178 GHRWPFEDGSFDIVYSEHMFEHILPMDGaTFLREMYRVLRPGGIMRVTTPDLEkylvgyvQRK 240
                      578899999999999988888877766626788**********99999988875555554444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (371 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       530  (0.029561); expected 358.6 (0.02)
Passed bias filter:                      440  (0.0245412); expected 358.6 (0.02)
Passed Vit filter:                        56  (0.00312343); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.48u 0.23s 00:00:00.71 Elapsed: 00:00:00.39
# Mc/sec: 2842.14
//
Query:       KOO22966.1  [L=180]
Description: polynucleotide phosphorylase polyadenylase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.3e-07   31.1   0.2    3.2e-07   30.6   0.2    1.2  1  S1        S1 RNA binding domain
  ------ inclusion threshold ------
      0.067   13.6   0.0       0.13   12.6   0.0    1.4  1  Ret2_MD   RNA editing 3' terminal uridylyl transferase 2 midd


Domain annotation for each model (and alignments):
>> S1  S1 RNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.6   0.2   3.6e-11   3.2e-07       4      73 ..      57     135 ..      54     137 .. 0.92

  Alignments for each domain:
  == domain 1  score: 30.6 bits;  conditional E-value: 3.6e-11
                 TTCEEEEEEEEEETTEEEEEET.TTEEEEEEGGGSSSS.......CEESCHHHCEETTEEEEEEEEEEE.TTTTEEEEE CS
          S1   4 kgevveGeVtsvtkgGafVelg.ngvegfvpaselsrd.......arvedpdevlkvGdevkvkvlkvd.kdrrriils 73 
                 +ge  eG+V+++t++G fV l  + + g++++ +l++        + ++++++v  vG +v v+vl+++ k  +ri+ls
  KOO22966.1  57 VGEKAEGIVSKITDYGCFVSLCgGQQLGLLHIRQLADGkrmlkneVEDFVEETVGPVGSKVSVEVLQLEfKGLKRISLS 135
                 79********************88999*********88*******99********************996667888887 PP

>> Ret2_MD  RNA editing 3' terminal uridylyl transferase 2 middle domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   1.5e-05      0.13      33      86 ..      56     108 ..      52     112 .. 0.88

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 1.5e-05
     Ret2_MD  33 lgrenvegiyverttyGcriaiqvsskeqaieaigllPdGkiltkgmredytrd 86 
                 + +e+ egi  + t yGc + + ++ ++  +  i  l dGk + k   ed++ +
  KOO22966.1  56 VVGEKAEGIVSKITDYGCFVSL-CGGQQLGLLHIRQLADGKRMLKNEVEDFVEE 108
                 567889999***********98.8888888889*****************9875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (180 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       285  (0.015896); expected 358.6 (0.02)
Passed bias filter:                      271  (0.0151152); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.40u 0.23s 00:00:00.63 Elapsed: 00:00:00.38
# Mc/sec: 1405.33
//
Query:       KOO22967.1  [L=183]
Description: sumo-conjugating enzyme [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      5e-34  116.9   0.0    5.7e-34  116.8   0.0    1.0  1  UQ_con    Ubiquitin-conjugating enzyme


Domain annotation for each model (and alignments):
>> UQ_con  Ubiquitin-conjugating enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  116.8   0.0   3.2e-38   5.7e-34       1     139 [.      13     169 ..      13     170 .. 0.93

  Alignments for each domain:
  == domain 1  score: 116.8 bits;  conditional E-value: 3.2e-38
                 HHHHHHHHHHHSTTTTEEEEEEE..T..TEECEEEEEEEB.TTSTTTTEEEEEEEE--TTTTTS--EEEESS....T-SCTTBETTSBB-CGGGS.... CS
      UQ_con   1 rlqkelkelakkkpsgisaklvd..d..enlfewkvlikgpedtpYeggvFklelefpedYPlkpPkvkfvt....kifHPnvdksGevcldiLk.... 87 
                 rlq+e k+++k++p+++ ak++   d  +nlf w++ i  ++ ++++ g + ++++f++dYP ++P vkf+     ++fHPnv+++G vcld+++    
  KOO22967.1  13 RLQRERKDWRKDRPPNFVAKPQTlaDgsSNLFAWDIKIPAKPSSIWAPGRYAATMTFKPDYPQTAPVVKFKLidgkPLFHPNVYEDGGVCLDLINppes 111
                 89*******************99763669******************************************77888*******************8876 PP

                 ......TTT--TTSHHHHHHHHHHHHHHS--TTS-SSHHHHHHHHHTHHHHHHHHHHH CS
      UQ_con  88 ......eekWspaltlesvllsiqsLlaepnpesplnkeaakllkkdreeykkkvkey 139
                         +W+p+l++++vll++q +l+epn  sp+++  +kllk+d+++ykkkv+e+
  KOO22967.1 112 thgygkGGTWKPTLNFKTVLLALQTFLDEPNMGSPAQQAPYKLLKQDEAAYKKKVSEQ 169
                 666655333**********************************************875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (183 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       342  (0.0190752); expected 358.6 (0.02)
Passed bias filter:                      311  (0.0173462); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.22s 00:00:00.59 Elapsed: 00:00:00.37
# Mc/sec: 1501.69
//
Query:       KOO22968.1  [L=878]
Description: ABC transporter like protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    6.8e-22   78.2   0.0    1.3e-21   77.3   0.0    1.3  1  Bestrophin  Bestrophin, RFP-TM, chloride channel
  ------ inclusion threshold ------
      0.018   15.0   1.6      0.068   13.1   0.1    2.7  2  APH         Phosphotransferase enzyme family


Domain annotation for each model (and alignments):
>> Bestrophin  Bestrophin, RFP-TM, chloride channel
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   77.3   0.0   1.4e-25   1.3e-21      72     272 ..     265     493 ..     262     496 .. 0.82

  Alignments for each domain:
  == domain 1  score: 77.3 bits;  conditional E-value: 1.4e-25
  Bestrophin  72 vydRWweqrkllgwldkaarslarqvrglsdeegrlarrtilrylvlllvlffralssrvrkr.................................... 134
                 +y+R+we+r+ +  + + +r+lar +  + +ee+ ++r ++l   + ll++f+r+l++++ +r                                    
  KOO22968.1 265 AYNRFWEARRIWECVLNRCRDLARFIYLY-QEETGAERVSRL---ISLLCAFPRELRAHLVGRsllddlevekkprplnpqmrtglrdvladaerewpt 359
                 69**************************5.778888999999...9*********************99999999999777777777777766666666 PP

  Bestrophin 135 ..........fptlehlleagllteeeakile...............nkywvplqWavsllrrlaerlkelakegrikddq.alkeleeelnelraklg 207
                                                                ++ ++pl     +++ l+ ++k+  ++  +++      +l + +n+l++ +g
  KOO22968.1 360 ssagyehvvrR--------------------AtaapmppafitkrleSAGNRPLL----VCKCLSTDFKAIPDSLTFTSRErL--MLLKDVNQLSSYIG 432
                 64444443322....................033333333333333488889998....666666678889999999998745..9************* PP

  Bestrophin 208 sleridwtpiPlvYtqvvtravylyfllallgrqfldseidlylPvftllq............faffffGllkvaeq 272
                 ++er+  tp+Pl+Y ++++r+++l++l+               lP f+l++            +++++fG+++++  
  KOO22968.1 433 ACERLLQTPVPLSYARHTSRFLALWCLT---------------LP-FSLVEsmgllivpvtafVTWCLFGIQEIGLF 493
                 ****************************...............**.9***9999999999999889*******9965 PP

>> APH  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.1   7.6e-06     0.068     167     186 ..      41      60 ..      29      73 .. 0.86
   2 ?   -1.5   0.1      0.22     2e+03      93     147 ..     520     572 ..     515     592 .. 0.70

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 7.6e-06
                 EEE-SS-SGGGEEEC..TTE CS
         APH 167 vllHgDlhpgNllvdpddgr 186
                 +++H+D+hpgN+lv+p+++r
  KOO22968.1  41 GFVHCDPHPGNVLVRPRPDR 60 
                 79*************77666 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 0.22
                 HHHHHHHHHHCCHHCH.-STTTB-SHHCHTCCHHHHHHCHHHCCCGCCTCC...HHHH CS
         APH  93 ellealgeflaalhqvdpaalpladflaqdlellrqlesatarllaselld...llee 147
                  +l+ lg++l+ l q+    +pl+   a+ ++++ +++++t+++l  +l+d   l+e 
  KOO22968.1 520 TALGGLGSALGGLAQA----SPLSLLDAP-VADNLLEHERTHNKLIVALRDdftLREV 572
                 5688999999999999....555555555.6667777777777777777774444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (878 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       288  (0.0160634); expected 358.6 (0.02)
Passed bias filter:                      213  (0.0118802); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.59u 0.27s 00:00:00.86 Elapsed: 00:00:00.43
# Mc/sec: 6133.27
//
Query:       KOO22969.1  [L=305]
Description: alcohol dehydrogenase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.4e-10   41.6   0.0    4.6e-10   40.7   0.0    1.5  1  ADH_zinc_N_2     Zinc-binding dehydrogenase
    7.6e-10   38.9   0.0    1.5e-09   37.9   0.0    1.5  1  ADH_zinc_N       Zinc-binding dehydrogenase
  ------ inclusion threshold ------
        0.1   12.4   3.0       0.84    9.4   0.2    2.6  3  Eno-Rase_NADH_b  NAD(P)H binding domain of trans-2-enoyl-CoA 
       0.19   11.4   0.4       0.56    9.9   0.2    1.8  2  ELFV_dehydrog    Glutamate/Leucine/Phenylalanine/Valine dehyd


Domain annotation for each model (and alignments):
>> ADH_zinc_N_2  Zinc-binding dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.7   0.0     1e-13   4.6e-10       1     133 []     135     291 ..     135     291 .. 0.68

  Alignments for each domain:
  == domain 1  score: 40.7 bits;  conditional E-value: 1e-13
                   TT-SEEEETT..STTHH......HHH-TT-EEEEEES-H............HHHH.HHHHHHE.EEEEE.EEE----........S-EEE-CHHHCT CS
  ADH_zinc_N_2   1 lGAdevidyr..tedfe......aatggegvDvvldtvg............gealleaslkvl.pggGr.lvsiggpp.......lsaallkpakkr 68 
                   lGAd v+ y+  t ++         t ++ + +v+dtv             ++   +as+ +l +g  + +v+ig++        +++ ++ + +  
    KOO22969.1 135 LGADSVVPYDggTAAWLpmleriVRT-HGPFHLVFDTVSshekrdkeaayeSTIRQAASVPLLaAGLKHqYVVIGASTgswakaaIKRVIGLNCF-- 228
                   8******6662155555999975333.588*********99998877774333333445566644434446777742234444433333333333.. PP

                   TT-EEEE--GGG...-...........-HHHHHHHHHHHHHHH----EEEEEEGGG..HHHHHHHHHSS--SSEEEE CS
  ADH_zinc_N_2  69 kgrsvkyeflfsmkas..........aqadileelaalieeGklrpvvdrvfplee..aaeAhrylesgrarGKiVl 133
                                +a+            a+ l++l + i+eGklrp v+ ++++++  ++ A+r+l+s+r++GK+ +
    KOO22969.1 229 -------------EAGrelfwidpfrCTAQ-LAALRQAIDEGKLRPQVSATMSFTDggVQSAFRQLRSRRVVGKLAV 291
                   .............22233445555545777.*******************************************976 PP

>> ADH_zinc_N  Zinc-binding dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.9   0.0   3.3e-13   1.5e-09       1      70 [.     104     175 ..     104     193 .. 0.86

  Alignments for each domain:
  == domain 1  score: 37.9 bits;  conditional E-value: 3.3e-13
                 HHHHHHHHHHHHTT-EEEEEESSHHHHHHHHHTTESEEEET.TTC.HHHHHHHHHTT.TSSEEEEEESSCSHH CS
  ADH_zinc_N   1 gvGlaavqlAkalGaeviavdsseeklelakklGadeviny.kea.dlverikeltg.gegvdvvfecvGsga 70 
                 gvG++a qlA+ lGa+v+a++s  + +el+++lGad v+ y   +  +  +++++ + ++++++vf++v s++
  KOO22969.1 104 GVGHIATQLAHRLGARVTAICSACN-AELVRSLGADSVVPYdGGTaAWLPMLERIVRtHGPFHLVFDTVSSHE 175
                 9********************9995.9**************63334677777777766779********9765 PP

>> Eno-Rase_NADH_b  NAD(P)H binding domain of trans-2-enoyl-CoA reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.0       1.1   4.9e+03      54      73 ..      48      68 ..      47      72 .. 0.74
   2 ?    9.4   0.2   0.00019      0.84      32      67 ..      86     121 ..      77     127 .. 0.74
   3 ?    2.6   0.0     0.025   1.1e+02      40      51 ..     201     212 ..     179     225 .. 0.75

  Alignments for each domain:
  == domain 1  score: -2.6 bits;  conditional E-value: 1.1
                     HHHHHHHHHS.S--EEEEEE- CS
  Eno-Rase_NADH_b 54 LAsriaaafg.agadtigVsf 73
                     LA ri ++ + +  + +g+sf
       KOO22969.1 48 LAERILVSCAqVAYKPVGISF 68
                     788888766646778888888 PP

  == domain 2  score: 9.4 bits;  conditional E-value: 0.00019
                      HS-----.-SEEEEESTSSHHH.HHHHHHHHHSS--E CS
  Eno-Rase_NADH_b  32 sqkkiekgpkkvLviGaStGYG.LAsriaaafgagad 67 
                      +q++++   ++ LviGaS G G +A+++a   ga ++
       KOO22969.1  86 EQHALQA-GQHLLVIGASGGVGhIATQLAHRLGARVT 121
                      4555553.699***********767777777666555 PP

  == domain 3  score: 2.6 bits;  conditional E-value: 0.025
                      -SEEEEESTSSH CS
  Eno-Rase_NADH_b  40 pkkvLviGaStG 51 
                       ++  viGaStG
       KOO22969.1 201 KHQYVVIGASTG 212
                      45678******9 PP

>> ELFV_dehydrog  Glutamate/Leucine/Phenylalanine/Valine dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.0      0.28   1.2e+03      35      76 ..      38      81 ..      32      91 .. 0.81
   2 ?    9.9   0.2   0.00012      0.56      21      62 ..      84     124 ..      77     136 .. 0.78

  Alignments for each domain:
  == domain 1  score: -1.1 bits;  conditional E-value: 0.28
                   EEEE--..SHHHHHHHHHHHHCT-EEEEEEESSEEEEETTEE-H CS
  ELFV_dehydrog 35 vaisGs..GnvgsyaallltelgakvvavsDssGviydpeGldi 76
                   + i+G+  G ++      +++   k v++s  + ++    G+  
     KOO22969.1 38 FGIQGPmkGTLAERILVSCAQVAYKPVGISFIEAAVLPLVGITA 81
                   6799999999**999999999999***99988888887777755 PP

  == domain 2  score: 9.9 bits;  conditional E-value: 0.00012
                    HHHHTTTS-STTEEEEEE--.SHHHHHHHHHHHHCT-EEEEEE CS
  ELFV_dehydrog  21 mlkklkldslegkrvaisGs.Gnvgsyaallltelgakvvavs 62 
                    ++++ +l+  +g+++ + G  G vg+ a +l+++lga+v+a+ 
     KOO22969.1  84 VFEQHALQ--AGQHLLVIGAsGGVGHIATQLAHRLGARVTAIC 124
                    55555555..45555565655********************95 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (305 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       488  (0.0272185); expected 358.6 (0.02)
Passed bias filter:                      429  (0.0239277); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.45u 0.23s 00:00:00.68 Elapsed: 00:00:00.40
# Mc/sec: 2309.81
//
Query:       KOO22970.1  [L=329]
Description: hypothetical protein Ctob_007218, partial [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    0.00011   22.2   9.1      0.089   12.9   0.1    4.0  4  Arm       Armadillo/beta-catenin-like repeat


Domain annotation for each model (and alignments):
>> Arm  Armadillo/beta-catenin-like repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.1   0.0     0.012   2.2e+02      24      37 ..      56      69 ..      49      70 .. 0.85
   2 !   12.9   0.1     5e-06     0.089       7      41 .]      83     117 ..      82     117 .. 0.96
   3 !   10.5   0.6   2.7e-05      0.48       7      36 ..     163     192 ..     160     197 .. 0.85
   4 ?   -2.3   0.0       0.3   5.3e+03      11      23 ..     234     247 ..     231     256 .. 0.74

  Alignments for each domain:
  == domain 1  score: 2.1 bits;  conditional E-value: 0.012
                SSHHHHHHHHHHHH CS
         Arm 24 edeevqeeAawALs 37
                +d e q++A+ AL+
  KOO22970.1 56 GDAEGQTQACDALC 69
                78999*******96 PP

  == domain 2  score: 12.9 bits;  conditional E-value: 5e-06
                 HHHHTTHHHHHHHHTTTSSHHHHHHHHHHHHHHTT CS
         Arm   7 avieaGavppLvrLLssedeevqeeAawALsNLaa 41 
                 avi++Ga ++L +L +s+  +   +A+ AL+ La+
  KOO22970.1  83 AVIDQGAPRALKHLCRSQALQAHADAVVALGRLAR 117
                 8*******************************996 PP

  == domain 3  score: 10.5 bits;  conditional E-value: 2.7e-05
                 HHHHTTHHHHHHHHTTTSSHHHHHHHHHHH CS
         Arm   7 avieaGavppLvrLLssedeevqeeAawAL 36 
                 a+  aG+v +L+++ +s++e+++  A+  L
  KOO22970.1 163 AMLAAGCVSVLLQCCDSMNETLKLSALQGL 192
                 67889****************998887655 PP

  == domain 4  score: -2.3 bits;  conditional E-value: 0.3
                 TTHHHHHHHHTT.T CS
         Arm  11 aGavppLvrLLs.s 23 
                 + ++++Lv L + s
  KOO22970.1 234 LSGLQILVGLARdS 247
                 67999999998755 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (329 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       458  (0.0255452); expected 358.6 (0.02)
Passed bias filter:                      292  (0.0162865); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.24s 00:00:00.63 Elapsed: 00:00:00.36
# Mc/sec: 2712.22
//
Query:       KOO22971.1  [L=1508]
Description: kinesin-like protein kin12b-like protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    2.7e-43  148.2   0.0    4.3e-43  147.5   0.0    1.2  1  Kinesin      Kinesin motor domain
    1.8e-07   30.3  29.3       0.11   12.3   1.1    6.6  6  IQ           IQ calmodulin-binding motif
     0.0017   18.1   1.0      0.067   13.2   0.2    2.7  2  EF-hand_6    EF-hand domain
     0.0048   16.8   0.0     0.0098   15.8   0.0    1.5  1  Microtub_bd  Microtubule binding
  ------ inclusion threshold ------
       0.09   12.3   0.9        8.4    6.1   0.1    2.6  2  EF-hand_5    EF hand
       0.14   12.5   0.2       0.87    9.9   0.1    2.4  2  AAA_19       AAA domain
       0.17   11.5   2.0       0.34   10.6   0.5    2.2  2  EF-hand_1    EF hand
       0.34   11.4   0.8        1.1    9.8   0.2    1.9  2  EF-hand_7    EF-hand domain pair


Domain annotation for each model (and alignments):
>> Kinesin  Kinesin motor domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  147.5   0.0   1.9e-46   4.3e-43      55     332 ..     958    1269 ..     906    1270 .. 0.85

  Alignments for each domain:
  == domain 1  score: 147.5 bits;  conditional E-value: 1.9e-46
                  HHHHHHHHHHHHHHHHHTTSEEEEEEEESTTSSHHHHHTBC...........TTTSBSHHHHHHHHHHHHHHHCTTTH...EEEEEEEEEEEEEETT CS
     Kinesin   55 qeevyeetakplvesvleGynatifaYGqtgsGKTyTmegk...........eeeeeGiipraleelFesikkekeek...ekefsvkvsylEiYne 137 
                  ++  y ++ ++  e +l+G +at++a+G+ g+GKT+T+ g              +e G++pra ++lF++ ++    +       +v++++lE+  +
  KOO22971.1  958 SAAAYASLCAEATEGLLRGESATLIAFGAPGTGKTHTLFGPtshlsnaantsAWQEWGLLPRASHHLFTRASAVGGVEglfGLGATVTCTFLEVTDD 1054
                  56788999999**************************************99977899**************998766556667889*********** PP

                  EEEETTSTTTTSTSSEBEEEECTTSCCEEETTS--EEESSHHHHHHHHHHHHHHHTSTTSSCTSHHCCS......EEEEEEEEEEEETTTTTCEEEE CS
     Kinesin  138 eiyDLLeskkskkkkklkiredskkgevyvkgltevevksaeevlellekgeknrkvaetklneeSSRS......Havftitleqknlkeeteekvk 228 
                   iyDLL ++     ++l++re++k g v+v + t++ v+  e+v++ l  g +nr+ a ++  + SSRS      Ha+ft+t++ +  ++++   ++
  KOO22971.1 1055 AIYDLLGKN----GRPLRLRESAKLG-VHVPEATQRLVEWEEDVMRALLIGLQNRADAGHR--TPSSRSgagggaHAIFTLTVSVRVGASGE---MQ 1141
                  *******88....567********98.****************************877665..567887777777*********99866444...58 PP

                  EEEEEEEEEEECCCHHHHSS.....TCHH.HHHHHHHHHHHHHHHHHHHHHHHHT............CCTSTSCGGGSHHHHHTGGGHSSSS..... CS
     Kinesin  229 isklnLvDLAGsErasktga.....aege.rlkEaaniNkSLlaLgrvisaLaek............kkskhipYRdSkLTrlLqdsLgGns..... 302 
                  +s+l+LvDL   E  +  g+     ++g+         N+SL+aL+++i+aLae+             + + +pYRdSkLT+lL+d+LgG++     
  KOO22971.1 1142 HSSLQLVDLGAAEAHR-PGSgsgtgSGGTgGTVGKPPANTSLSALNTCINALAEStafsstlpsttnPNPQGVPYRDSKLTWLLRDALGGDAigaar 1237
                  9********9999644.333222221121012333457**************************99888899******************8544444 PP

                  ..EEEEEEEE-TBGGGHHHHHHHHHHHHHHCT CS
     Kinesin  303 ..ktlmivtvspssenleetlstlkfaerake 332 
                    +t+ ++++  +  +l +++++l+fa+r+++
  KOO22971.1 1238 pmQTIFVACCGAEPGKLPHSINSLRFAQRCRQ 1269
                  4489*************************987 PP

>> IQ  IQ calmodulin-binding motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.0   0.9     0.011        25       2      17 ..      13      28 ..      12      32 .. 0.87
   2 !    7.8   0.1    0.0014       3.2       1      21 []      92     112 ..      92     112 .. 0.94
   3 !    7.3   0.0    0.0021       4.7       1      17 [.     306     322 ..     306     326 .. 0.82
   4 ?    4.1   2.5     0.021        48       2      18 ..     570     586 ..     569     588 .. 0.86
   5 !    9.8   0.1   0.00032      0.73       5      20 ..     596     611 ..     593     612 .. 0.90
   6 !   12.3   1.1     5e-05      0.11       3      20 ..     619     636 ..     617     637 .. 0.92

  Alignments for each domain:
  == domain 1  score: 5.0 bits;  conditional E-value: 0.011
                HHHHHHHHHHHHHHHH CS
          IQ  2 kaaikIQaawRGylaR 17
                ka++++Qa  RG  +R
  KOO22971.1 13 KAVVRLQALARGRSTR 28
                9***********8877 PP

  == domain 2  score: 7.8 bits;  conditional E-value: 0.0014
                 HHHHHHHHHHHHHHHHHHHHH CS
          IQ   1 rkaaikIQaawRGylaRkryk 21 
                 ++aa++I ++ RG   Rk++k
  KOO22971.1  92 ERAATTIGKVLRGRIERKKLK 112
                 59****************986 PP

  == domain 3  score: 7.3 bits;  conditional E-value: 0.0021
                 HHHHHHHHHHHHHHHHH CS
          IQ   1 rkaaikIQaawRGylaR 17 
                 ++a++k+Q++ RG   R
  KOO22971.1 306 HAAVVKLQSVARGNAKR 322
                 68***********8655 PP

  == domain 4  score: 4.1 bits;  conditional E-value: 0.021
                 HHHHHHHHHHHHHHHHH CS
          IQ   2 kaaikIQaawRGylaRk 18 
                 + ai+IQaa R+  +++
  KOO22971.1 570 RHAIRIQAAMRRRIVMR 586
                 679********998876 PP

  == domain 5  score: 9.8 bits;  conditional E-value: 0.00032
                 HHHHHHHHHHHHHHHH CS
          IQ   5 ikIQaawRGylaRkry 20 
                 +++Q+a R+ laRk+ 
  KOO22971.1 596 VLLQSAARARLARKHV 611
                 79************96 PP

  == domain 6  score: 12.3 bits;  conditional E-value: 5e-05
                 HHHHHHHHHHHHHHHHHH CS
          IQ   3 aaikIQaawRGylaRkry 20 
                 a+++IQa +RG l+R+r+
  KOO22971.1 619 AVLRIQALVRGKLMRRRL 636
                 899*************95 PP

>> EF-hand_6  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.2   0.2     3e-05     0.067       2      27 ..     471     496 ..     470     500 .. 0.90
   2 ?    2.6   0.0     0.073   1.6e+02       3      15 ..     508     520 ..     508     525 .. 0.93

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 3e-05
   EF-hand_6   2 lreaFklfDkdgdGkidaeElrkalr 27 
                 + ++F  +D d +G+++ eE+  a+ 
  KOO22971.1 471 IVDLFYSWDGDENGTVTLEEFEEAMD 496
                 7899*******************997 PP

  == domain 2  score: 2.6 bits;  conditional E-value: 0.073
   EF-hand_6   3 reaFklfDkdgdG 15 
                 r++F ++D ++dG
  KOO22971.1 508 RSFFGALDANHDG 520
                 789*********9 PP

>> Microtub_bd  Microtubule binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.0   4.4e-06    0.0098      78     149 .]     973    1060 ..     959    1060 .. 0.82

  Alignments for each domain:
  == domain 1  score: 15.8 bits;  conditional E-value: 4.4e-06
                   HHTT--EEEEEEES............................ST-HCHHHHHHHHHHCCTS....CCCCEEEEEEEEEEESS-EEETT CS
  Microtub_bd   78 aldgynvcifaygqTGsGKtyTmeg............eeeeagmipraveeifetiselke....kgwkyeielqfveiynekvqDlL 149 
                    l+g   +++a g  G GKt+T+ g              +e g +pra +++f+ +s         g   +++++f+e+ ++ ++DlL
   KOO22971.1  973 LLRGESATLIAFGAPGTGKTHTLFGptshlsnaantsAWQEWGLLPRASHHLFTRASAVGGveglFGLGATVTCTFLEVTDDAIYDLL 1060
                   579999*****************99999998776554446678899********9998754212245678999*************98 PP

>> EF-hand_5  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.1   0.1    0.0037       8.4       1      23 [.     471     493 ..     471     495 .. 0.87
   2 ?    4.3   0.1     0.014        31       4      14 ..     510     520 ..     508     521 .. 0.89

  Alignments for each domain:
  == domain 1  score: 6.1 bits;  conditional E-value: 0.0037
                 HHHHHHHH-SS-SSCE-HHHHHH CS
   EF-hand_5   1 lkdtFqaiDlNgDGkIskeELkt 23 
                 ++d+F   D +  G+++ eE+++
  KOO22971.1 471 IVDLFYSWDGDENGTVTLEEFEE 493
                 57888888*************87 PP

  == domain 2  score: 4.3 bits;  conditional E-value: 0.014
                 HHHHH-SS-SS CS
   EF-hand_5   4 tFqaiDlNgDG 14 
                 +F a+D+N+DG
  KOO22971.1 510 FFGALDANHDG 520
                 799*******9 PP

>> AAA_19  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   0.1   0.00039      0.87      11      40 ..     979    1008 ..     970    1052 .. 0.86
   2 ?   -2.9   0.0       3.5   7.8e+03      47      61 ..    1325    1339 ..    1318    1342 .. 0.85

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.00039
      AAA_19   11 kvllvtaGpGtGKTrvlkhivallvelggv 40  
                   +l+  + pGtGKT++l +  ++l ++ + 
  KOO22971.1  979 ATLIAFGAPGTGKTHTLFGPTSHLSNAANT 1008
                  5677789**********9999999887765 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 3.5
      AAA_19   47 lvaftgrAakelrer 61  
                  l+++ + Aak++r++
  KOO22971.1 1325 LATPPRSAAKRMRDA 1339
                  7899********986 PP

>> EF-hand_1  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.5   0.00015      0.34       5      27 ..     474     496 ..     470     498 .. 0.84
   2 ?   -0.7   0.0      0.61   1.4e+03       5      15 ..     510     520 ..     508     521 .. 0.85

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00015
                 HHHHHTTTSSSEEEHHHHHHHHH CS
   EF-hand_1   5 iFrefDkDgdGkIdfeEfkellk 27 
                 +F   D D +G++++eEf e++ 
  KOO22971.1 474 LFYSWDGDENGTVTLEEFEEAMD 496
                 5666799**************95 PP

  == domain 2  score: -0.7 bits;  conditional E-value: 0.61
                 HHHHHTTTSSS CS
   EF-hand_1   5 iFrefDkDgdG 15 
                 +F  +D ++dG
  KOO22971.1 510 FFGALDANHDG 520
                 78899*****9 PP

>> EF-hand_7  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   0.2   0.00049       1.1      44      70 ..     469     495 ..     450     496 .. 0.78
   2 ?    9.0   0.5   0.00083       1.9       6      29 ..     473     496 ..     466     521 .. 0.53

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.00049
   EF-hand_7  44 eelellfkefDtdkdGvisfdEFlkly 70 
                   + +lf  +D d +G+++++EF++++
  KOO22971.1 469 LRIVDLFYSWDGDENGTVTLEEFEEAM 495
                 3366899999**************998 PP

  == domain 2  score: 9.0 bits;  conditional E-value: 0.00083
   EF-hand_7   6 eaFkelDtdgdgyldkeellrllr 29 
                 + F + D d +g ++ ee+++++ 
  KOO22971.1 473 DLFYSWDGDENGTVTLEEFEEAMD 496
                 445555556666666666555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1508 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       956  (0.0533214); expected 358.6 (0.02)
Passed bias filter:                      392  (0.021864); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.90u 0.27s 00:00:01.17 Elapsed: 00:00:00.44
# Mc/sec: 10401.41
//
Query:       KOO22972.1  [L=600]
Description: udp-galactose transporter [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.8e-73  246.4   2.8    4.8e-73  246.1   2.8    1.1  1  Nuc_sug_transp   Nucleotide-sugar transporter
    5.1e-10   39.0   4.3    1.2e-09   37.9   4.1    1.7  2  UAA              UAA transporter family
    2.5e-06   27.7  27.3    9.5e-06   25.8   3.3    2.5  2  EamA             EamA-like transporter family
     0.0076   15.6   4.4      0.059   12.7   0.1    2.5  2  Sugar_transport  Sugar transport protein
     0.0091   15.4   2.7      0.011   15.1   0.1    2.2  2  TPT              Triose-phosphate Transporter family
  ------ inclusion threshold ------
       0.39    9.9  14.2       0.11   11.6   4.9    2.9  3  PUNUT            Purine nucleobase transmembrane transport


Domain annotation for each model (and alignments):
>> Nuc_sug_transp  Nucleotide-sugar transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  246.1   2.8   1.6e-76   4.8e-73       7     314 ..       9     332 ..       3     333 .. 0.94

  Alignments for each domain:
  == domain 1  score: 246.1 bits;  conditional E-value: 1.6e-76
  Nuc_sug_transp   7 yislvvlvvqnaslvltlrYartkedkerylsttavllaeilklvvclllllkeekskv.kkllrelkkeilakpkdtlklavPsliYtvqnnll 100
                     +++l++l + +++ v   r ++ + d +r +  ++v+l+e lkl++++ l l++++      +  +l++++ ++p+dtl+l+vP+++Yt+qn   
      KOO22972.1   9 VFTLAILLFEHCATVTLTRLTQQRIDAPRPIPCVVVFLTEALKLLMSMCLELTNCGGLGsASTFGRLRDALCSSPQDTLRLSVPAVLYTIQNLAI 103
                     789***************************************************998762567889***************************** PP

  Nuc_sug_transp 101 yvalsnLdaatyqvtyqlkilttalfsvllLkrklskkqWlslllLvaGvalvqlkqkeseesekaaaaa...............keensvlGli 180
                     +val nL+  ++qv yq k+l ta++svllL+r+l+ +qW++ll L++Gv+ v l++ +++   +++++                +++ ++lG+ 
      KOO22972.1 104 FVALGNLEVVIFQVLYQTKLLLTAVLSVLLLGRRLTPRQWFALLALTFGVICVELSDGSTSGGGRSGSSGsgspspakdlasearRSRHEMLGVL 198
                     *******************************************************999888777766666789**********999999****** PP

  Nuc_sug_transp 181 avlaacllsgfaGvYfekiLkdsnv...slWirniqlallsiilalltvllkdgskisekGffkGydlvvwvvvllqavGGlvvavvvkyaDnil 272
                     a l a lls++aGvYfe i+k++++   slW+rn+ql ++++++a  tv + ++s++  +G++   d  ++++v+l+a+GGl+va v+ky Dnil
      KOO22972.1 199 AALLAALLSSLAGVYFEAIVKKAEAaapSLWVRNVQLCVFTLPIAAATVGW-QWSAVRAQGLVL--DPPTVLLVVLNATGGLLVAAVIKYGDNIL 290
                     *********************99876679****************998776.6********985..8889999********************** PP

  Nuc_sug_transp 273 kgfatslaiilstvasvllldlkitllFllGallviaavflY 314
                     k+f+t+ ++i+ t++sv+l+d+++t+ F+ G+llv  + +++
      KOO22972.1 291 KNFTTACSVIIGTLISVVLFDFQLTVSFAWGSLLVASSAYVF 332
                     ************************************999987 PP

>> UAA  UAA transporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.9   4.1   3.9e-13   1.2e-09      95     300 ..     118     334 ..      90     336 .. 0.83
   2 ?   -3.7   0.0       1.7   5.2e+03      32      51 ..     466     485 ..     461     496 .. 0.56

  Alignments for each domain:
  == domain 1  score: 37.9 bits;  conditional E-value: 3.9e-13
         UAA  95 frssklipvmilGililgkrYsllqylsvllltlGviiftllsakdk...................kedskeslnkfllGiallvlallldavlglvqe 174
                 +  +kl+ + +l++l+lg+r + +q  ++l lt Gvi + l++ + +                   +  +     + +lG++  +la ll+++ g++ e
  KOO22972.1 118 LYQTKLLLTAVLSVLLLGRRLTPRQWFALLALTFGVICVELSDGSTSgggrsgssgsgspspakdlA-SEARRSRHEMLGVLAALLAALLSSLAGVYFE 215
                 445799***********************************8887779**************98843.445556679********************** PP

         UAA 175 klykkygkhskealfyshllslplfl.llqgellsavkflsesedvallslpsklfylllnvltqyvcikgVlilisefgaltvtlvltlRKfvslllS 272
                 ++ kk  +  + +l++ ++  ++++l + +  +  ++ +++++  v     p      +l+v++ + +   V + i+  +       +    ++  l+S
  KOO22972.1 216 AIVKKA-EAAAPSLWVRNVQLCVFTLpIAAATVGWQWSAVRAQGLVLD---PP----TVLLVVLNATGGLLVAAVIKYGDNILKNFTTACSVIIGTLIS 306
                 ****65.456689**************99************9999996...44....4455555555556666666666666666666666678889** PP

         UAA 273 illFknpltlqhlvgtllVflglllysy 300
                 ++lF+ +lt+   +g+llV  +++++++
  KOO22972.1 307 VVLFDFQLTVSFAWGSLLVASSAYVFAT 334
                 **********************999876 PP

  == domain 2  score: -3.7 bits;  conditional E-value: 1.7
         UAA  32 gnlltfvqflfvaleglles 51 
                 g+l+ ++++ +val+ l e+
  KOO22972.1 466 GTLISLITLGLVALCTLREK 485
                 55666666666666666443 PP

>> EamA  EamA-like transporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.8   3.3   3.2e-09   9.5e-06      76     135 ..      97     156 ..      81     158 .. 0.89
   2 !    7.3  16.1    0.0017       5.1       1     135 [.     194     332 ..     194     334 .. 0.84

  Alignments for each domain:
  == domain 1  score: 25.8 bits;  conditional E-value: 3.2e-09
        EamA  76 vlafllffyalkktsasnaslitslePvftlilsvlllgekltlkqllgivlillGvlli 135
                 ++ +l++f al ++++ +  ++  +  ++t++lsvlllg +lt +q+++++   +Gv+ +
  KOO22972.1  97 TIQNLAIFVALGNLEVVIFQVLYQTKLLLTAVLSVLLLGRRLTPRQWFALLALTFGVICV 156
                 566799***************************************************976 PP

  == domain 2  score: 7.3 bits;  conditional E-value: 0.0017
        EamA   1 llgillallaalfwaiyfvlskillrkv....spltltfvrfliagillliiallkegklaklslkdwlll.lllgllgtvlafllffyalkktsasna 94 
                 +lg+l allaal++++++v+  ++++k     ++l++  v++ + ++   + ++ ++++  +  +  +l    +l ++ ++ + ll    +k+++    
  KOO22972.1 194 MLGVLAALLAALLSSLAGVYFEAIVKKAeaaaPSLWVRNVQLCVFTLPIAAATVGWQWSA-VRAQGLVLDPpTVLLVVLNATGGLLVAAVIKYGDNILK 291
                 579******************999999965556667777777666666666666666666.44444466667999999999999*************** PP

        EamA  95 slitslePvftlilsvlllgekltlkqllgivlillGvlli 135
                  + t+ ++++ +++sv+l+  +lt++   g +l+  ++++ 
  KOO22972.1 292 NFTTACSVIIGTLISVVLFDFQLTVSFAWGSLLVASSAYVF 332
                 **********************************9999986 PP

>> Sugar_transport  Sugar transport protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.7   0.1     2e-05     0.059     200     271 ..      82     156 ..      46     161 .. 0.86
   2 ?    3.6   0.9     0.012        35     118     215 ..     203     306 ..     186     330 .. 0.71

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 2e-05
  Sugar_transport 200 vekvslkniisGllwaignlflllsaqkvGvatafslsqlsvvistlggillLkekktkkelvlv...iiGivli 271
                      + + +l+  ++ +l++i nl+++++  ++ v +  +l q+ ++++ + ++llL+ + t ++++++   + G++++
       KOO22972.1  82 SPQDTLRLSVPAVLYTIQNLAIFVALGNLEVVIFQVLYQTKLLLTAVLSVLLLGRRLTPRQWFALlalTFGVICV 156
                      556788999***************************************************987641115687776 PP

  == domain 2  score: 3.6 bits;  conditional E-value: 0.012
  Sugar_transport 118 laliliviGivltslkekkekksee...enlkkgllll..llstigyviyvvlaqlvkvdgleail..pqaiGmvivalilalakkkalvekvs 204
                      +al+  ++G+++ ++ +k+e++  +   +n++ ++ +l  + +t+g+   +v aq + +d  +++l    a G ++va ++++ + ++l++ ++
       KOO22972.1 203 AALLSSLAGVYFEAIVKKAEAAAPSlwvRNVQLCVFTLpiAAATVGWQWSAVRAQGLVLDPPTVLLvvLNATGGLLVAAVIKYGD-NILKNFTT 295
                      46667789****9999999988877667788999988722457899999999999988876665541145676666666666655.36666666 PP

  Sugar_transport 205 lkniisGllwa 215
                      +  +i G l +
       KOO22972.1 296 ACSVIIGTLIS 306
                      67777776654 PP

>> TPT  Triose-phosphate Transporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.1   3.7e-06     0.011      67     136 ..      88     157 ..      68     162 .. 0.90
   2 ?   -0.4   0.3      0.19   5.6e+02     143     178 ..     193     227 ..     187     332 .. 0.69

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 3.7e-06
         TPT  67 ailplalvktlghvlavvslskvaVSfthtvKasePiFtvilsrlllgeklsllvylsLlpivgGvalas 136
                  + + a++ t+ +++  v+l++  V   +++  ++ + t++ls lllg +l+   + +Ll +  Gv++  
  KOO22972.1  88 RLSVPAVLYTIQNLAIFVALGNLEVVIFQVLYQTKLLLTAVLSVLLLGRRLTPRQWFALLALTFGVICVE 157
                 566789999*********************************************************9975 PP

  == domain 2  score: -0.4 bits;  conditional E-value: 0.19
         TPT 143 nligfisAlisnltfslrnifsKkllkklkdldaln 178
                 +++g ++Al++ l +sl +++   ++kk  +  a  
  KOO22972.1 193 EMLGVLAALLAALLSSLAGVYFEAIVKK-AEAAAPS 227
                 5778888888888888887777666666.2333333 PP

>> PUNUT  Purine nucleobase transmembrane transport
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   4.9   3.8e-05      0.11      82     153 ..      93     164 ..      81     248 .. 0.71
   2 ?    2.0   2.4     0.032        96     241     295 ..     238     290 ..     234     319 .. 0.75
   3 ?   -0.9   0.3      0.25   7.5e+02     269     314 ..     289     332 ..     280     335 .. 0.65

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 3.8e-05
       PUNUT  82 GllvavdnllyslgllylpvstfslilatqLaFtaifsalinkqkftrfiinsvvlltisaallalssssdk 153
                  +l+ ++nl   ++l +l v +f +++ t+L++ta++s l+   ++t+   ++++ lt++   + ls+ s +
  KOO22972.1  93 AVLYTIQNLAIFVALGNLEVVIFQVLYQTKLLLTAVLSVLLLGRRLTPRQWFALLALTFGVICVELSDGSTS 164
                 5788899988888899999999**************************999999999999887776654433 PP

  == domain 2  score: 2.0 bits;  conditional E-value: 0.032
       PUNUT 241 YvlvlvgsavswQvlavGavgLvflvSslfsnvistvllpvvsvlavilfrdkfs 295
                 ++l +++ +v wQ  av a gLv+   +++  v+++    +  v+avi + d++ 
  KOO22972.1 238 FTLPIAAATVGWQWSAVRAQGLVLDPPTVLLVVLNATGGLL--VAAVIKYGDNIL 290
                 778889999****************9999988888776655..679999998764 PP

  == domain 3  score: -0.9 bits;  conditional E-value: 0.25
       PUNUT 269 lfsnvistvllpvvsvlavilfrdkfsavkgvalllailgfasYvY 314
                 ++ n ++++++ +  ++ v+lf+  f+ +  +a    +++ ++Yv+
  KOO22972.1 289 ILKNFTTACSVIIGTLISVVLFD--FQLTVSFAWGSLLVASSAYVF 332
                 66778888888888899999886..444444555555555555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (600 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1115  (0.0621897); expected 358.6 (0.02)
Passed bias filter:                      546  (0.0304535); expected 358.6 (0.02)
Passed Vit filter:                        64  (0.00356964); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.66u 0.29s 00:00:00.95 Elapsed: 00:00:00.45
# Mc/sec: 3974.67
//
Query:       KOO22973.1  [L=111]
Description: hypothetical protein Ctob_004608 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (111 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       146  (0.00814323); expected 358.6 (0.02)
Passed bias filter:                      116  (0.00646996); expected 358.6 (0.02)
Passed Vit filter:                         5  (0.000278878); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.25s 00:00:00.58 Elapsed: 00:00:00.38
# Mc/sec: 880.83
//
Query:       KOO22974.1  [L=216]
Description: 60s ribosomal protein l10a-1-like protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.6e-40  139.0   1.5      2e-40  138.7   1.5    1.0  1  Ribosomal_L1  Ribosomal protein L1p/L10e family
  ------ inclusion threshold ------
      0.054   14.0   0.3       0.18   12.3   0.1    1.9  2  CIAPIN1       Cytokine-induced anti-apoptosis inhibitor 1, Fe


Domain annotation for each model (and alignments):
>> Ribosomal_L1  Ribosomal protein L1p/L10e family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  138.7   1.5   2.2e-44     2e-40       5     203 ..      23     210 ..      16     211 .. 0.96

  Alignments for each domain:
  == domain 1  score: 138.7 bits;  conditional E-value: 2.2e-44
                   S-SSS--EEEEEEEESSS-TTSGGG--EEEEE-STSTSSCS-EEEEE-HHHHH...HHHHTT..-SEEETCHHHHHHT-HHHHHHTCCH-SEEEEEG CS
  Ribosomal_L1   5 akkkfdesveialnlttkkpkkadqrkpgkipLphplgkevkiclitkdpqaeyakeakeagriakviglkklkkkyksfeakrkllkefdlfladd 101
                   +k+ f e++e+++ l++++p+k d+r+ g+i+Lph  + ++++c++ +  ++e   +a++ g   ++   + lk+  k+++  +k++k++  f+a++
    KOO22974.1  23 KKRDFVETIELQIGLKQYDPQK-DKRFAGSIKLPHIPRPKMRVCVLGDAFHCE---KAAALG--LEFKNAEGLKNFNKNKKLIKKFAKKYHNFVASE 113
                   366799*************666.99****************************...999***..9999***************************** PP

                   GGHHHHHHHCHHHHGGGT-S-ECC..CT.BTS-HHHHHHHHCTTEEEEE-TTTSEEEEEEEETTSSHHHHHHHHHHHHHHHHHTSTTTSGSEEEEEE CS
  Ribosomal_L1 102 rimpllpklLGkvfgkrkkmPipvltkgtvkedvkkevekalkstvvvrldkgtclsvkvGklsftaeelaeNieavvkalvekvpkkwkniksiyl 198
                   ++++++p+lLG+ ++k++k+Pi vl+    +ed++++v+++++ t++++l+k  c+sv vG+++++++ ++eN +  +++lv+ ++k+w+n+k +yl
    KOO22974.1 114 SLIKQIPRLLGPGLNKAGKFPILVLQ----QEDLATKVDDVKA-TIKFQLKKVLCMSVSVGHCGMENQPILENTKLSINFLVSLLKKNWQNVKVLYL 205
                   ************************66....48***********.***************************************************** PP

                   EETTS CS
  Ribosomal_L1 199 kttms 203
                   k+tm+
    KOO22974.1 206 KSTMG 210
                   ****9 PP

>> CIAPIN1  Cytokine-induced anti-apoptosis inhibitor 1, Fe-S biogenesis
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.1     2e-05      0.18      72      93 ..      64      84 ..      59      91 .. 0.84
   2 ?   -1.4   0.0      0.39   3.5e+03      52      52 ..     146     146 ..      88     173 .. 0.57

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 2e-05
     CIAPIN1 72 sCaLGDafrCsgCPylGlPafk 93
                 C+LGDaf C+    lGl  fk
  KOO22974.1 64 VCVLGDAFHCEKAAALGLE-FK 84
                5*************99994.55 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 0.39
     CIAPIN1  52 e 52 
                 +
  KOO22974.1 146 K 146
                 1 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (216 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       603  (0.0336327); expected 358.6 (0.02)
Passed bias filter:                      396  (0.0220871); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.44u 0.25s 00:00:00.69 Elapsed: 00:00:00.42
# Mc/sec: 1548.35
//
Query:       KOO22975.1  [L=358]
Description: cell division protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.4e-41  142.1   1.1    3.5e-41  141.6   1.1    1.2  1  Tubulin     Tubulin/FtsZ family, GTPase domain
    1.9e-30  105.0   0.6    1.9e-30  105.0   0.6    2.1  2  FtsZ_C      FtsZ family, C-terminal domain
    0.00033   19.9   6.0      0.015   14.5   2.0    2.3  2  Tubulin_2   Tubulin like
  ------ inclusion threshold ------
      0.014   14.9   1.1       0.12   11.9   0.8    2.3  2  LDcluster4  SLOG cluster4 family


Domain annotation for each model (and alignments):
>> Tubulin  Tubulin/FtsZ family, GTPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  141.6   1.1   7.8e-45   3.5e-41       2     196 ..      49     211 ..      48     212 .. 0.97

  Alignments for each domain:
  == domain 1  score: 141.6 bits;  conditional E-value: 7.8e-45
                 EEEEEEHHHHHHHHHHHHH...HHHCH....HHHT.....TTEEEEE....EEESBHHHHHTS-GS......EEEE--CCCCTTC--TT-HHHHHHHHH CS
     Tubulin   2 iivigvGqcGnqignelwellakehgiqsdgdslesfFsesgkveyiprsvaidtdpqvlneikagselfnpnklllgkegagnngaggypevgkeaae 100
                 i+vigvG++G++++n++++ + +e               + ++ve+      i+td q+l+++ a       n+l lg   ++++gagg+p+ g+e ae
  KOO22975.1  49 IKVIGVGGSGGNAVNRMIQ-FGTE---------------TAQTVEFW----SINTDIQALDASLAP------NRLGLGAGTSRGLGAGGNPDKGRESAE 121
                 89*****************.5555...............35679***....***************......*************************** PP

                 HTHHHHHHHHTT-SE.SEEEEEEETTSSHHHHHHHHHHHHHHHTSTTSEEEEEEEE--GG.G-HHHHHHHHHHHHHHHHT-SEEEEEEHHHHHCCS CS
     Tubulin 101 eileeirkevekcdslqgffitaslgGGTGSGlgpvilevlkeeypkalvvtvvvlPsefsevvvepynailalkelieesdavividNdaLlkil 196
                 e+ e+i ++v+++d+   +f++a++gGGTGSG++pv+++++k++  + l+++vv+ P++f e++++ ++a+ a+++l+ ++da+i+++Nd+Ll+i+
  KOO22975.1 122 ESYEQITQMVKGSDM---VFVVAGMGGGTGSGAAPVVAQAAKQQ--GCLTIGVVTKPFSF-EGKRRTNQAEAAIERLKTHVDAMIIVSNDRLLDIV 211
                 ***************...**************************..**************.********************************997 PP

>> FtsZ_C  FtsZ family, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.6   0.2       3.2   1.5e+04       6      23 ..     142     159 ..     139     165 .. 0.51
   2 !  105.0   0.6   4.2e-34   1.9e-30       1      94 [.     260     353 ..     260     354 .. 0.99

  Alignments for each domain:
  == domain 1  score: -3.6 bits;  conditional E-value: 3.2
                 EEEEEESTTHHHHHHHHH CS
      FtsZ_C   6 gvGeasgedraeeaaeaa 23 
                 g+G  +g++ a  +a+aa
  KOO22975.1 142 GMGGGTGSGAAPVVAQAA 159
                 444445544444444444 PP

  == domain 2  score: 105.0 bits;  conditional E-value: 4.2e-34
                 EEEEEEEEEEESTTHHHHHHHHHHTSGGGT--GGG-SEEEEEEEE-TT--HHHHHHHHHHHHHHS-TTSEEEEEEEE-TT--SEEEEEEEEES- CS
      FtsZ_C   1 GvAmmgvGeasgedraeeaaeaaisspLLdvdlsgAkgvlvnitggsdltlkEveevaetireevdeeanvivGavideeledeirvtvvatgl 94 
                 G A+mg+G+a+g++ra++aa aa+sspL+d  ++ A+g+++ itg+sd+tl+Ev+e+ ++i+e +d++an+i+Ga+id+++  ++ +tvvatg+
  KOO22975.1 260 GLALMGIGTAEGKGRARDAAIAAMSSPLIDFPIEKATGIVFTITGSSDMTLQEVNEASQAIYEMADPDANIIFGAQIDDSMGPVLSITVVATGF 353
                 89*******************************************************************************************8 PP

>> Tubulin_2  Tubulin like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.2   0.2   0.00055       2.5       2      48 ..      51      91 ..      51     107 .. 0.79
   2 !   14.5   2.0   3.3e-06     0.015     137     177 ..     118     156 ..      93     187 .. 0.74

  Alignments for each domain:
  == domain 1  score: 7.2 bits;  conditional E-value: 0.00055
   Tubulin_2  2 viGLGGtGgkvlaelrrrlreelgslelpdkvqFlyiDtdeneknrl 48
                viG+GG+Gg++++++ +   e+       + v+F  i td ++++ +
  KOO22975.1 51 VIGVGGSGGNAVNRMIQFGTETA------QTVEFWSINTDIQALDAS 91
                7*********9998876665555......789999999999998654 PP

  == domain 2  score: 14.5 bits;  conditional E-value: 3.3e-06
   Tubulin_2 137 ealrdaikrlrgsageeeglnvfVvgSLaGGTGSGiflDva 177
                 e+ ++ ++++++   ++++  vfVv ++ GGTGSG +  va
  KOO22975.1 118 ESAEESYEQITQM--VKGSDMVFVVAGMGGGTGSGAAPVVA 156
                 4445555555552..233468**************876555 PP

>> LDcluster4  SLOG cluster4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.8   2.7e-05      0.12      16      70 ..     118     177 ..     107     205 .. 0.69
   2 ?    0.0   0.0      0.13   5.7e+02       5      41 ..     301     335 ..     297     343 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 2.7e-05
  LDcluster4  16 eealelaeelGrliAkegavllt....Ggrt.GvmeaaskGakeagGltvGilpasseke 70 
                 e+a+e  e++ +++  +++v +     Gg++ G   +++++ak++g lt+G++ +  + e
  KOO22975.1 118 ESAEESYEQITQMVKGSDMVFVVagmgGGTGsGAAPVVAQAAKQQGCLTIGVVTKPFSFE 177
                 4456677788888888888776433324554699999***************98754444 PP

  == domain 2  score: 0.0 bits;  conditional E-value: 0.13
  LDcluster4   5 gVmGsaeteakeealelaeelGrliAkegavlltGgr 41 
                 ++ Gs++  ++ ++++ a +  +++A  +a++++G++
  KOO22975.1 301 TITGSSD--MTLQEVNEASQAIYEMADPDANIIFGAQ 335
                 6788888..6667789999999999999****99996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (358 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       530  (0.029561); expected 358.6 (0.02)
Passed bias filter:                      394  (0.0219756); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.48u 0.26s 00:00:00.74 Elapsed: 00:00:00.42
# Mc/sec: 2534.51
//
Query:       KOO22976.1  [L=684]
Description: hypothetical protein Ctob_004604 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (684 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       173  (0.00964917); expected 358.6 (0.02)
Passed bias filter:                      164  (0.00914719); expected 358.6 (0.02)
Passed Vit filter:                        11  (0.000613531); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.50u 0.23s 00:00:00.73 Elapsed: 00:00:00.39
# Mc/sec: 5211.39
//
Query:       KOO22977.1  [L=365]
Description: hypothetical protein Ctob_004606 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (365 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       362  (0.0201908); expected 358.6 (0.02)
Passed bias filter:                      296  (0.0165096); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.43u 0.26s 00:00:00.69 Elapsed: 00:00:00.40
# Mc/sec: 2736.43
//
Query:       KOO22978.1  [L=149]
Description: 30s ribosomal protein s9 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.9e-40  138.1   0.5    2.2e-40  137.9   0.5    1.0  1  Ribosomal_S9  Ribosomal protein S9/S16


Domain annotation for each model (and alignments):
>> Ribosomal_S9  Ribosomal protein S9/S16
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  137.9   0.5   1.3e-44   2.2e-40       1     121 []      24     149 .]      24     149 .] 0.96

  Alignments for each domain:
  == domain 1  score: 137.9 bits;  conditional E-value: 1.3e-44
                   EECTTEEEEEEEEESS....SEEEETTEECCHHS.TTSCHHHHHCHHHHHTTTSSSEEEEEEEESS-HHHHHHHHHHHHHHHHHHHHHHHHHHHCTC CS
  Ribosomal_S9   1 GrrKesvArvwikegk....gkilvngksleeYf.keeaarekvleplkltgllgkfdvfvkvkgGGlsgqaeAirlgiaraLvalekeekkeLkka 92 
                   GrrK++vArvwi ++k     ++++n ksl+++f  +  +r++vl+p+  t + g+f v+++vkgGG+sgqaeA+r+gia a++ l+ + +++Lk+a
    KOO22978.1  24 GRRKTAVARVWIWPTKedklAEVRINRKSLSSFFgGHWVHRHTVLAPFFETATAGRFSVMATVKGGGISGQAEAVRHGIATAMQGLDASLRPVLKSA 120
                   9************9874444679************9***************************************************977******* PP

                   CCTS-B--------TTSSCTTB----S-- CS
  Ribosomal_S9  93 glltrDpRvvErkKtgkkkARkkyqwskR 121
                   g++trD+Rv+ErkK+g+k+ARkk+ w+kR
    KOO22978.1 121 GFMTRDARVRERKKPGQKGARKKFAWVKR 149
                   ****************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (149 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       327  (0.0182386); expected 358.6 (0.02)
Passed bias filter:                      253  (0.0141112); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.34u 0.23s 00:00:00.57 Elapsed: 00:00:00.36
# Mc/sec: 1241.18
//
Query:       KOO22979.1  [L=2387]
Description: protein ilityhia [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    9.9e-33  109.4  51.1    9.9e-05   22.3   0.1   21.1 22  HEAT           HEAT repeat
    1.4e-23   83.0  87.7    1.8e-06   28.2   0.6   19.0 19  HEAT_2         HEAT repeats
      3e-23   81.9 111.1    8.2e-08   32.6   0.0   23.3 23  HEAT_EZ        HEAT-like repeat
    9.6e-17   61.5   0.0      0.026   14.6   0.0    7.0  7  Cnd1           non-SMC mitotic condensation complex subunit 1
    6.4e-12   45.5   0.0       0.17   11.4   0.0    6.1  7  CLASP_N        CLASP N terminal
    8.6e-12   44.4   0.0      0.028   13.0   0.0    6.5  7  Adaptin_N      Adaptin N terminal region
    1.6e-11   44.7   0.0       0.47   11.1   0.0    7.3  6  Vac14_Fab1_bd  Vacuolar 14 Fab1-binding region
      9e-08   32.0   0.4        0.9    9.5   0.0    7.4  7  UME            UME (NUC010) domain
    4.7e-07   29.3   8.4        2.3    7.2   0.2    7.2  8  MMS19_C        RNAPII transcription regulator C-terminal
    2.1e-06   28.0   0.1          1    9.5   0.0    5.4  6  ParcG          Parkin co-regulated protein
    0.00019   21.6   7.1         17    5.7   0.1    7.8  8  RTP1_C1        Required for nuclear transport of RNA pol II C
    0.00036   19.9   4.7        1.4    8.1   0.0    5.1  6  DUF3535        Domain of unknown function (DUF3535)
     0.0041   17.4   0.2        5.8    7.3   0.1    4.0  3  Cohesin_HEAT   HEAT repeat associated with sister chromatid c
     0.0044   16.2   0.1        5.2    6.1   0.0    4.0  4  Dopey_N        Dopey, N-terminal
  ------ inclusion threshold ------
       0.31   11.0   4.4        9.8    6.2   0.1    5.1  3  DUF3437        Domain of unknown function (DUF3437)
       0.91    8.3   9.0        3.2    6.5   0.0    4.3  5  API5           Apoptosis inhibitory protein 5 (API5)
        8.4    7.2  11.9        6.8    7.5   0.3    5.3  5  YukD           WXG100 protein secretion system (Wss), protein


Domain annotation for each model (and alignments):
>> HEAT  HEAT repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.0       8.8   9.3e+03       5      19 ..     163     177 ..     161     177 .. 0.85
   2 ?   -1.7   0.0       4.9   5.2e+03       1      24 [.     668     696 ..     668     697 .. 0.77
   3 ?    3.3   0.1      0.12   1.3e+02      12      24 ..     759     771 ..     747     773 .. 0.83
   4 ?    1.8   0.1      0.36   3.8e+02       5      26 ..     838     859 ..     835     861 .. 0.92
   5 ?   -0.5   0.0       1.9     2e+03      12      29 ..     897     914 ..     893     916 .. 0.86
   6 !   10.5   0.0   0.00057       0.6       1      29 [.    1136    1164 ..    1136    1166 .. 0.91
   7 !    8.6   0.0    0.0023       2.4       1      29 [.    1174    1202 ..    1174    1204 .. 0.94
   8 ?    5.6   0.0     0.021        23       1      27 [.    1215    1241 ..    1215    1245 .. 0.90
   9 !   15.5   0.0   1.4e-05     0.015       1      30 [.    1335    1364 ..    1335    1365 .. 0.93
  10 ?    6.2   0.1     0.013        14       1      22 [.    1453    1474 ..    1453    1476 .. 0.91
  11 !   19.0   0.0   1.1e-06    0.0011       1      29 [.    1491    1519 ..    1491    1521 .. 0.95
  12 !    6.9   0.0    0.0084       8.8       4      30 ..    1598    1624 ..    1595    1625 .. 0.89
  13 ?    5.9   0.1     0.018        19       1      28 [.    1633    1660 ..    1633    1661 .. 0.94
  14 !   22.3   0.1   9.4e-08   9.9e-05       1      29 [.    1675    1703 ..    1675    1705 .. 0.93
  15 ?   -0.6   0.1       2.1   2.2e+03       1      12 [.    1713    1725 ..    1713    1729 .. 0.77
  16 ?   -0.3   0.2       1.7   1.8e+03      15      29 ..    1849    1863 ..    1847    1865 .. 0.87
  17 ?    0.3   0.0       1.1   1.2e+03       1      30 [.    1876    1905 ..    1876    1906 .. 0.88
  18 ?   -1.3   0.0       3.5   3.7e+03      13      26 ..    1970    1983 ..    1963    1985 .. 0.85
  19 !    7.1   0.0    0.0073       7.7       4      29 ..    2045    2070 ..    2042    2072 .. 0.90
  20 ?   -2.6   0.1       9.4   9.9e+03       6      26 ..    2125    2145 ..    2124    2148 .. 0.87
  21 !   11.4   0.1   0.00029      0.31       3      29 ..    2265    2291 ..    2263    2293 .. 0.92
  22 ?   -1.9   0.0       5.6   5.9e+03       1      15 [.    2308    2322 ..    2308    2329 .. 0.77

  Alignments for each domain:
  == domain 1  score: -2.5 bits;  conditional E-value: 8.8
                 HHHHHT-SSHHHHHH CS
        HEAT   5 llkllsDpspeVRea 19 
                 + k l  +++eVR+a
  KOO22979.1 163 FAKGLGEKDAEVRRA 177
                 77889999*****87 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 4.9
                 HHHHHHHHH.T-....SSHHHHHHHHHHH CS
        HEAT   1 llPlllkll.sD....pspeVReaAakaL 24 
                 llP+l++++  D     ++ V eaA+k L
  KOO22979.1 668 LLPVLQRAMhADgkgeAAAAVHEAAFKLL 696
                 79999999955588877777888888877 PP

  == domain 3  score: 3.3 bits;  conditional E-value: 0.12
                 SSHHHHHHHHHHH CS
        HEAT  12 pspeVReaAakaL 24 
                 +s++VR aA++aL
  KOO22979.1 759 ESAKVRIAAVEAL 771
                 789*********9 PP

  == domain 4  score: 1.8 bits;  conditional E-value: 0.36
                 HHHHHT-SSHHHHHHHHHHHHH CS
        HEAT   5 llkllsDpspeVReaAakaLga 26 
                 ll ll +++ ++R+ +a+aL+a
  KOO22979.1 838 LLPLLASEELRIRQQVALALAA 859
                 78999***************86 PP

  == domain 5  score: -0.5 bits;  conditional E-value: 1.9
                 SSHHHHHHHHHHHHHHHH CS
        HEAT  12 pspeVReaAakaLgalae 29 
                 ++++ R+ +a++L+ala+
  KOO22979.1 897 DDWRSRQGVALTLAALAP 914
                 68999***********97 PP

  == domain 6  score: 10.5 bits;  conditional E-value: 0.00057
                  HHHHHHHHHT-SSHHHHHHHHHHHHHHHH CS
        HEAT    1 llPlllkllsDpspeVReaAakaLgalae 29  
                  +lP+ll++ sD s  VR aA+ a  ++++
  KOO22979.1 1136 ILPMLLTCVSDGSGPVRHAAVSASQRIMS 1164
                  89*******************99888876 PP

  == domain 7  score: 8.6 bits;  conditional E-value: 0.0023
                  HHHHHHHHHT-SSHHHHHHHHHHHHHHHH CS
        HEAT    1 llPlllkllsDpspeVReaAakaLgalae 29  
                  +lP ll++l  + ++   aA++ Lg +a 
  KOO22979.1 1174 VLPSLLNALDEEKWRTKHAAVELLGSMAY 1202
                  69************************986 PP

  == domain 8  score: 5.6 bits;  conditional E-value: 0.021
                  HHHHHHHHHT-SSHHHHHHHHHHHHHH CS
        HEAT    1 llPlllkllsDpspeVReaAakaLgal 27  
                  ++P l ++l++++p+V e A  aLg +
  KOO22979.1 1215 VVPRLTEALTHSHPKVKEGANAALGSV 1241
                  589*****************9999986 PP

  == domain 9  score: 15.5 bits;  conditional E-value: 1.4e-05
                  HHHHHHHHHT-SSHHHHHHHHHHHHHHHHC CS
        HEAT    1 llPlllkllsDpspeVReaAakaLgalaev 30  
                  llP l   l Dp peVR++ akaLg+l+ +
  KOO22979.1 1335 LLPELRAVLLDPIPEVRSTGAKALGRLCAG 1364
                  7999999999******************87 PP

  == domain 10  score: 6.2 bits;  conditional E-value: 0.013
                  HHHHHHHHHT-SSHHHHHHHHH CS
        HEAT    1 llPlllkllsDpspeVReaAak 22  
                  ++P++l  lsD+s  VR+++ +
  KOO22979.1 1453 VIPVVLARLSDDSGAVRDTCMR 1474
                  69****************9976 PP

  == domain 11  score: 19.0 bits;  conditional E-value: 1.1e-06
                  HHHHHHHHHT-SSHHHHHHHHHHHHHHHH CS
        HEAT    1 llPlllkllsDpspeVReaAakaLgalae 29  
                  llP+l++ lsD + ++R+a+a+ Lg+l++
  KOO22979.1 1491 LLPPLQRGLSDVNYRIRQASAELLGELMQ 1519
                  89*************************98 PP

  == domain 12  score: 6.9 bits;  conditional E-value: 0.0084
                  HHHHHHT-SSHHHHHHHHHHHHHHHHC CS
        HEAT    4 lllkllsDpspeVReaAakaLgalaev 30  
                   l++ ls ++ ++ +aAa+a+g+l+++
  KOO22979.1 1598 QLISGLSTEDEDQQQAAAQAMGELVSK 1624
                  68889999****************986 PP

  == domain 13  score: 5.9 bits;  conditional E-value: 0.018
                  HHHHHHHHHT-SSHHHHHHHHHHHHHHH CS
        HEAT    1 llPlllkllsDpspeVReaAakaLgala 28  
                  llP+l+++l++ ++  R+ +++ L +l+
  KOO22979.1 1633 LLPTLQQCLTSADAARRRGVCLGLSELM 1660
                  89********************999985 PP

  == domain 14  score: 22.3 bits;  conditional E-value: 9.4e-08
                  HHHHHHHHHT-SSHHHHHHHHHHHHHHHH CS
        HEAT    1 llPlllkllsDpspeVReaAakaLgalae 29  
                  ++P++ + l+D++++VReaAa+++ +l +
  KOO22979.1 1675 IIPCVREGLCDEDSSVREAAARSFSQLQR 1703
                  89***********************9976 PP

  == domain 15  score: -0.6 bits;  conditional E-value: 2.1
                  HHHHHHHHH.T-S CS
        HEAT    1 llPlllkll.sDp 12  
                  ++P+ll+ll sD+
  KOO22979.1 1713 IVPALLQLLrSDD 1725
                  79*******5554 PP

  == domain 16  score: -0.3 bits;  conditional E-value: 1.7
                  HHHHHHHHHHHHHHH CS
        HEAT   15 eVReaAakaLgalae 29  
                  +VR aAa  + ++++
  KOO22979.1 1849 HVRIAAAALIETVCK 1863
                  7********999998 PP

  == domain 17  score: 0.3 bits;  conditional E-value: 1.1
                  HHHHHHHHHT-SSHHHHHHHHHHHHHHHHC CS
        HEAT    1 llPlllkllsDpspeVReaAakaLgalaev 30  
                  l+  l+ + + ++p V ++ ++ L +l++ 
  KOO22979.1 1876 LIQSLIGMFHAEEPAVQRSGIRGLDNLIKS 1905
                  678899***********9999999999875 PP

  == domain 18  score: -1.3 bits;  conditional E-value: 3.5
                  SHHHHHHHHHHHHH CS
        HEAT   13 speVReaAakaLga 26  
                   pe Re +a aLg+
  KOO22979.1 1970 TPELREQSAAALGE 1983
                  6899********97 PP

  == domain 19  score: 7.1 bits;  conditional E-value: 0.0073
                  HHHHHHT-SSHHHHHHHHHHHHHHHH CS
        HEAT    4 lllkllsDpspeVReaAakaLgalae 29  
                  +++k+lsDp+  VR+  a aL +l++
  KOO22979.1 2045 TFVKALSDPAKVVRARGATALSHLIS 2070
                  699******************99986 PP

  == domain 20  score: -2.6 bits;  conditional E-value: 9.4
                  HHHHT-SSHHHHHHHHHHHHH CS
        HEAT    6 lkllsDpspeVReaAakaLga 26  
                  l+ll+ ++ e   aAa  +ga
  KOO22979.1 2125 LELLCADDDELSFAAATLIGA 2145
                  689999999999999999997 PP

  == domain 21  score: 11.4 bits;  conditional E-value: 0.00029
                  HHHHHHHT-SSHHHHHHHHHHHHHHHH CS
        HEAT    3 PlllkllsDpspeVReaAakaLgalae 29  
                   ll++ll D+  eVR +A+ aL ++++
  KOO22979.1 2265 GLLVELLADDVLEVRVSALHALKTMCK 2291
                  689**********************98 PP

  == domain 22  score: -1.9 bits;  conditional E-value: 5.6
                  HHHHHHHHHT-SSHH CS
        HEAT    1 llPlllkllsDpspe 15  
                  +lP + ++++D+   
  KOO22979.1 2308 VLPGIAQNCQDSRRM 2322
                  699********8655 PP

>> HEAT_2  HEAT repeats
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.7       3.6   3.8e+03       3      50 ..     125     177 ..      94     180 .. 0.51
   2 ?   -1.9   1.7       4.5   4.7e+03      33      52 ..     160     179 ..     120     209 .. 0.52
   3 ?   -0.4   0.6       1.5   1.6e+03      35      71 ..     313     356 ..     301     384 .. 0.57
   4 !    9.0   4.8    0.0017       1.8      48      88 .]     729     772 ..     668     772 .. 0.83
   5 ?    3.6   2.1     0.085        89      35      61 ..     837     863 ..     826     910 .. 0.83
   6 ?    0.6   0.3      0.71   7.5e+02      40      76 ..     893     938 ..     874     950 .. 0.60
   7 ?    4.9   0.1     0.032        34      32      87 ..     960    1033 ..     927    1034 .. 0.59
   8 !    9.8   0.1   0.00099         1      30      86 ..    1005    1072 ..     966    1074 .. 0.70
   9 !   17.0   0.0   5.4e-06    0.0057      21      88 .]    1122    1198 ..    1120    1198 .. 0.81
  10 !   28.2   0.6   1.7e-09   1.8e-06       1      87 [.    1175    1275 ..    1175    1276 .. 0.77
  11 !   16.9   0.0   5.7e-06     0.006      31      88 .]    1334    1398 ..    1293    1421 .. 0.81
  12 !   10.5   0.1   0.00057       0.6      31      87 ..    1452    1514 ..    1440    1527 .. 0.73
  13 !   17.4   0.3     4e-06    0.0043      34      81 ..    1597    1651 ..    1567    1657 .. 0.82
  14 !   15.5   0.1   1.7e-05     0.017      32      79 ..    1675    1729 ..    1672    1732 .. 0.79
  15 ?    0.1   0.1         1   1.1e+03      11      49 ..    1886    1931 ..    1837    1950 .. 0.55
  16 ?    6.2   0.0     0.013        14       4      58 ..    2004    2068 ..    2001    2082 .. 0.73
  17 ?    1.0   0.3      0.55   5.8e+02      30      60 ..    2111    2148 ..    2075    2178 .. 0.67
  18 ?   -0.8   3.2         2   2.1e+03      30      55 ..    2261    2286 ..    2159    2287 .. 0.69
  19 ?    2.7   0.2      0.16   1.7e+02      31      56 ..    2262    2287 ..    2249    2300 .. 0.73

  Alignments for each domain:
  == domain 1  score: -1.6 bits;  conditional E-value: 3.6
      HEAT_2   3 aLlqalendpdpevrraairaLg.....rignpealpaLvellededpavRra 50 
                 aLl+++++   +  r++++ a g       +  ++  a+ + l  +d++vRra
  KOO22979.1 125 ALLALAAKETQEGPRATILAAAGrwmplAAAAASCATAFAKGLGEKDAEVRRA 177
                 34444433333334444444444222111122233444444445555555554 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 4.5
      HEAT_2  33 lpaLvellededpavRraaa 52 
                   a+ + l  +d++vRra +
  KOO22979.1 160 ATAFAKGLGEKDAEVRRAHV 179
                 55555555555555555543 PP

  == domain 3  score: -0.4 bits;  conditional E-value: 1.5
      HEAT_2  35 aLvellededpavRraaaeaLgai.......gdpealpaLkell 71 
                  L++l+ ++ +a Rraa +aL+++       + ++ l+aL+  +
  KOO22979.1 313 QLFQLIAHPMAAPRRAADKALSQYvatmpceAAERLLSALETVV 356
                 56677777777777777777776544433332233333333332 PP

  == domain 4  score: 9.0 bits;  conditional E-value: 0.0017
      HEAT_2  48 RraaaeaLgaig...dpealpaLkellddddddvvReaAaeaLa 88 
                  +aaa+aL +++   +p+al+ L+  ++ ++++ vR aA+eaL+
  KOO22979.1 729 HAAAADALRQVAaslRPDALEELLNGALYPESAKVRIAAVEALR 772
                 579999**9998554599*******9999************995 PP

  == domain 5  score: 3.6 bits;  conditional E-value: 0.085
      HEAT_2  35 aLvellededpavRraaaeaLgaigdp 61 
                  L++ll +e+ ++R+++a aL+a g +
  KOO22979.1 837 ELLPLLASEELRIRQQVALALAAAGAE 863
                 6999******************99864 PP

  == domain 6  score: 0.6 bits;  conditional E-value: 0.71
      HEAT_2  40 led.edpavRraaaeaLgaig........dpealpaLkellddddd 76 
                 ++d +d++ R+ +a +L+a++        +p + ++ k++l d+++
  KOO22979.1 893 VDDpDDWRSRQGVALTLAALAprlrareqLPLVFAFFKRALGDEHE 938
                 4563458899999999988853332222235566666666655444 PP

  == domain 7  score: 4.9 bits;  conditional E-value: 0.032
      HEAT_2   32 a.....lpaLvell....ede.dpavRraaaeaLgaig......dpealpaLkelldd..ddddvvReaAaeaL 87  
                  a     +p+L ++l    ++e + ++R+ ++ ++g ++      dp+++++ ++l++   ++++vv++ + ++L
  KOO22979.1  960 AmvtmlVPLLESFLaepaTTEvHDRIRQGVVLYMGSLAthippdDPKVAQVVTRLMAAlgTPSEVVQRTISQSL 1033
                  3444446777776644323332578**********995444444788888888866443377888888888877 PP

  == domain 8  score: 9.8 bits;  conditional E-value: 0.00099
      HEAT_2   30 p...ealpaLvellededpavRraaaeaLgai........gdpealpaLkellddddddvvReaAaea 86  
                  p   +++  L  +l ++++ v+r++ ++L+ +          pe l+ L++ l++++++  R+ Aa +
  KOO22979.1 1005 PkvaQVVTRLMAALGTPSEVVQRTISQSLASLvskpavkaNAPEYLATLQKTLTTTPSYAERRGAAFG 1072
                  2444678889999999*************9554444433357999******99998886666666655 PP

  == domain 9  score: 17.0 bits;  conditional E-value: 5.4e-06
      HEAT_2   21 iraLgrignp...ealpaLvellededpavRraaaeaLgai.......gdpealpaLkellddddddvvReaAaeaLa 88  
                  +++Lgr+ +p   ++lp+L+ +++d +  vR+aa+ a  +i       g + +lp+L+ +ld++ +++++ aA+e L+
  KOO22979.1 1122 CETLGRLFEPyiiTILPMLLTCVSDGSGPVRHAAVSASQRImsqlsaqGVKMVLPSLLNALDEE-KWRTKHAAVELLG 1198
                  788998888867788*********************99888554444455779******99765.5566****99875 PP

  == domain 10  score: 28.2 bits;  conditional E-value: 1.7e-09
      HEAT_2    1 ldaLlqalendpdpevrraairaLg......rignp.......ealpaLvellededpavRraaaeaLgaig....d...pealpaLkelldddddd 77  
                  l+ Ll+al + + + +++aa++ Lg          +       +++p L+e+l++++p v + a  aLg +g    +    + +p L+++l +++  
  KOO22979.1 1175 LPSLLNAL-DEEKWRTKHAAVELLGsmaycaP---KqlsatlpQVVPRLTEALTHSHPKVKEGANAALGSVGavikNpeiAQLVPTLLAALSEPSTK 1267
                  689*****.9***************7765440...2444445599************************9995554334455899999999766544 PP

      HEAT_2   78 vvReaAaeaL 87  
                      aA+ aL
  KOO22979.1 1268 T--GAAIDAL 1275
                  3..5667776 PP

  == domain 11  score: 16.9 bits;  conditional E-value: 5.7e-06
      HEAT_2   31 ealpaLvellededpavRraaaeaLgai....gd...pealpaLkellddddddvvReaAaeaLa 88  
                  ++lp L+ +l d+ p+vR + a+aLg++    g+   p+ lp+L+++l    + v R+ Aa++La
  KOO22979.1 1334 QLLPELRAVLLDPIPEVRSTGAKALGRLcaglGEeqfPDLLPWLLDSLSKGGSTVERAGAAQGLA 1398
                  67899999999999999999999999886644335678889999999998888888888988875 PP

  == domain 12  score: 10.5 bits;  conditional E-value: 0.00057
      HEAT_2   31 ealpaLvellededpavRraaae.aLgaig..dpea....lpaLkellddddddvvReaAaeaL 87  
                  e++p ++  l+d++ avR +  + aLg i+  +++a    lp L++ l +d ++++R+a+ae L
  KOO22979.1 1452 EVIPVVLARLSDDSGAVRDTCMRaALGMIAiyLEAAaallLPPLQRGL-SDVNYRIRQASAELL 1514
                  788999999999999999888875667554434333122368888887.578888899988877 PP

  == domain 13  score: 17.4 bits;  conditional E-value: 4e-06
      HEAT_2   34 paLvellededpavRraaaeaLgai....g...dpealpaLkellddddddvvRe 81  
                  + L++ l++ed++ ++aaa+a+g++        +p+ lp L+++l++ d +++R 
  KOO22979.1 1597 EQLISGLSTEDEDQQQAAAQAMGELvsklServLPKLLPTLQQCLTSADAARRRG 1651
                  6789999999999999999999988554313345999999999999888777664 PP

  == domain 14  score: 15.5 bits;  conditional E-value: 1.7e-05
      HEAT_2   32 alpaLvellededpavRraaaeaLgaigd...pe....alpaLkellddddddvv 79  
                  ++p+++e l ded+ vR+aaa++ +++++   ++     +paL++ll++dd  +v
  KOO22979.1 1675 IIPCVREGLCDEDSSVREAAARSFSQLQRilgQQaiyeIVPALLQLLRSDDALLV 1729
                  689*********************9997444444133367********9987655 PP

  == domain 15  score: 0.1 bits;  conditional E-value: 1
      HEAT_2   11 dpdpevrraairaLg....rignpea...lpaLvellededpavRr 49  
                   ++p+v+r  ir L     ++  +++   ++aL+e++++ +++ R+
  KOO22979.1 1886 AEEPAVQRSGIRGLDnlikSLPKERYplhVAALREAVKSVSTEHRA 1931
                  4455555555555553222122222233355555555554444444 PP

  == domain 16  score: 6.2 bits;  conditional E-value: 0.013
      HEAT_2    4 LlqalendpdpevrraairaLgrignp..........ealpaLvellededpavRraaaeaLgai 58  
                  L+ ++ +   p+v++a++++L  + ++          +++ ++v++l+d+   vR+  a+aL+ +
  KOO22979.1 2004 LIRIVGDRFPPAVKAAILHTLTLLITKgsillkpfvpQLQTTFVKALSDPAKVVRARGATALSHL 2068
                  666663344568999999999944444344444555599**********************9854 PP

  == domain 17  score: 1.0 bits;  conditional E-value: 0.55
      HEAT_2   30 p.......ealpaLvellededpavRraaaeaLgaigd 60  
                  p       ++++  +ell  +d +   aaa+ +ga+g+
  KOO22979.1 2111 PlsealvaKIQASALELLCADDDELSFAAATLIGACGR 2148
                  34444444778888999999999999999999999984 PP

  == domain 18  score: -0.8 bits;  conditional E-value: 2
      HEAT_2   30 pealpaLvellededpavRraaaeaL 55  
                  p++  +Lvell d+  +vR  a +aL
  KOO22979.1 2261 PSLYGLLVELLADDVLEVRVSALHAL 2286
                  33444555555555555555555554 PP

  == domain 19  score: 2.7 bits;  conditional E-value: 0.16
      HEAT_2   31 ealpaLvellededpavRraaaeaLg 56  
                  ++  +Lvell d+  +vR  a +aL 
  KOO22979.1 2262 SLYGLLVELLADDVLEVRVSALHALK 2287
                  55667888888888888888888885 PP

>> HEAT_EZ  HEAT-like repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   1.0         2   2.2e+03       8      53 ..     164     207 ..     155     208 .. 0.74
   2 ?    1.8   0.5      0.34   3.6e+02      32      55 .]     400     418 ..     377     443 .. 0.65
   3 ?    6.0   1.9     0.017        18       6      53 ..     731     772 ..     720     774 .. 0.79
   4 ?    1.8   0.3      0.35   3.7e+02      27      53 ..     836     858 ..     812     859 .. 0.69
   5 ?    1.5   0.8      0.42   4.5e+02       1      45 [.     899     942 ..     899     947 .. 0.80
   6 ?    2.6   0.1       0.2   2.1e+02       2      47 ..     984    1028 ..     983    1036 .. 0.64
   7 ?   -2.2   0.0       6.3   6.6e+03      23      49 ..    1043    1070 ..    1032    1074 .. 0.62
   8 ?    4.0   0.0     0.071        75       4      51 ..    1111    1158 ..    1108    1158 .. 0.88
   9 !   32.6   0.0   7.7e-11   8.2e-08       1      54 [.    1187    1240 ..    1187    1241 .. 0.98
  10 !    8.3   0.2    0.0033       3.4      10      50 ..    1237    1272 ..    1236    1275 .. 0.90
  11 !   12.0   0.1   0.00022      0.23      17      55 .]    1323    1361 ..    1315    1361 .. 0.91
  12 !   10.1   0.1   0.00085      0.89       1      53 [.    1348    1398 ..    1348    1400 .. 0.79
  13 ?    0.0   0.1       1.2   1.3e+03       3      34 ..    1389    1417 ..    1387    1419 .. 0.68
  14 ?    5.9   0.0     0.018        19      23      51 ..    1447    1475 ..    1441    1475 .. 0.88
  15 ?    1.8   0.2      0.35   3.6e+02      20      55 .]    1482    1517 ..    1474    1517 .. 0.78
  16 ?    5.3   0.1     0.028        30      16      55 .]    1582    1621 ..    1574    1621 .. 0.85
  17 !    9.0   0.9    0.0019         2       3      54 ..    1610    1658 ..    1608    1659 .. 0.85
  18 !   22.2   0.0   1.4e-07   0.00015       4      55 .]    1649    1701 ..    1646    1701 .. 0.92
  19 !    9.1   0.1    0.0018       1.9      22      44 ..    1706    1729 ..    1702    1733 .. 0.85
  20 !    8.1   0.3    0.0036       3.8       8      33 ..    1765    1790 ..    1763    1791 .. 0.96
  21 !   10.2   0.1   0.00079      0.83       1      53 [.    1971    2025 ..    1971    2027 .. 0.88
  22 !    9.1   0.0    0.0018       1.9      21      54 ..    2034    2067 ..    2030    2068 .. 0.88
  23 ?    6.6   0.3     0.011        12      27      53 ..    2261    2287 ..    2246    2289 .. 0.89

  Alignments for each domain:
  == domain 1  score: -0.7 bits;  conditional E-value: 2
     HEAT_EZ   8 awaLGrlaggepellqplvpeilpaLlalL.nddsdeVRaaAagaLg 53 
                 a +LG   +  +e  + +v  il+aL a+   ++++++  aA+  Lg
  KOO22979.1 164 AKGLG---EKDAEVRRAHVGGILAALEACAaASPPPATLVAAISSLG 207
                 44555...777777777888999999977767777788888888877 PP

  == domain 2  score: 1.8 bits;  conditional E-value: 0.34
     HEAT_EZ  32 aLlalLnddsdeVRaaAagaLgnl 55 
                 aL+     +s+e+R aA+g L++l
  KOO22979.1 400 ALA-----SSAETRVAALGGLRAL 418
                 566.....6666666666666554 PP

  == domain 3  score: 6.0 bits;  conditional E-value: 0.017
     HEAT_EZ   6 aAawaLGrlaggepellqplvpeilpaLlalLnddsd.eVRaaAagaLg 53 
                 aAa aL        +  + l p++l +Ll++   +++ +VR aA+ aL+
  KOO22979.1 731 AAADALR-------QVAASLRPDALEELLNGALYPESaKVRIAAVEALR 772
                 4555773.......334445579999***999999999*********97 PP

  == domain 4  score: 1.8 bits;  conditional E-value: 0.35
     HEAT_EZ  27 peilpaLlalLnddsd.eVRaaAagaLg 53 
                  e+lp+L+     ++  ++R+++a aL+
  KOO22979.1 836 AELLPLLA-----SEElRIRQQVALALA 858
                 55666666.....5555********997 PP

  == domain 5  score: 1.5 bits;  conditional E-value: 0.42
     HEAT_EZ   1 wrvRraAawaLGrlaggepel.lqplvpeilpaLlalLnddsdeV.R 45 
                 wr R ++a++L++la   p+l  + ++p + +++ ++L d++ +V +
  KOO22979.1 899 WRSRQGVALTLAALA---PRLrAREQLPLVFAFFKRALGDEHEMVaQ 942
                 899********9666...66647779999999999999999998844 PP

  == domain 6  score: 2.6 bits;  conditional E-value: 0.2
     HEAT_EZ    2 rvRraAawaLGrlaggepel...lqplvpeilpaLlalLnddsdeV.Raa 47  
                  r+R ++++ +G+la + p++   ++++v+++++aL+      ++eV + +
  KOO22979.1  984 RIRQGVVLYMGSLATHIPPDdpkVAQVVTRLMAALG-----TPSEVvQRT 1028
                  667777777777665555663336778888888888.....888876544 PP

  == domain 7  score: -2.2 bits;  conditional E-value: 6.3
     HEAT_EZ   23 qplvpeilpaLlalLnddsd.eVRaaAa 49  
                  + + pe l+ L ++L++ ++ + R  Aa
  KOO22979.1 1043 KANAPEYLATLQKTLTTTPSyAERRGAA 1070
                  4556777777777777777644444444 PP

  == domain 8  score: 4.0 bits;  conditional E-value: 0.071
     HEAT_EZ    4 RraAawaLGrlaggepellqplvpeilpaLlalLnddsdeVRaaAaga 51  
                  R++A+ a+ +l++  ++l +p++  ilp Ll + +d s +VR aA+ a
  KOO22979.1 1111 REGALHAFECLCETLGRLFEPYIITILPMLLTCVSDGSGPVRHAAVSA 1158
                  777888885588899999*****************9999******966 PP

  == domain 9  score: 32.6 bits;  conditional E-value: 7.7e-11
     HEAT_EZ    1 wrvRraAawaLGrlaggepellqplvpeilpaLlalLnddsdeVRaaAagaLgn 54  
                  wr ++aA+  LG++a ++p +l+  +p+++p L  +L++++++V++ A  aLg 
  KOO22979.1 1187 WRTKHAAVELLGSMAYCAPKQLSATLPQVVPRLTEALTHSHPKVKEGANAALGS 1240
                  99**************************************************96 PP

  == domain 10  score: 8.3 bits;  conditional E-value: 0.0033
     HEAT_EZ   10 aLGrlaggepellqplvpeilpaLlalLnddsdeVRaaAag 50  
                  aLG   ++++   +p++ +++p Lla+L  +++++++ Aa+
  KOO22979.1 1237 ALG---SVGAVIKNPEIAQLVPTLLAAL--SEPSTKTGAAI 1272
                  888...88888999**************..*****999985 PP

  == domain 11  score: 12.0 bits;  conditional E-value: 0.00022
     HEAT_EZ   17 gepellqplvpeilpaLlalLnddsdeVRaaAagaLgnl 55  
                   e++++ p++ ++lp+L a L d+ +eVR + a aLg+l
  KOO22979.1 1323 SERRDIVPYLGQLLPELRAVLLDPIPEVRSTGAKALGRL 1361
                  5789999****************999***********97 PP

  == domain 12  score: 10.1 bits;  conditional E-value: 0.00085
     HEAT_EZ    1 wrvRraAawaLGrlaggepellqplvpeilpaLlalLnddsdeV.RaaAagaLg 53  
                  ++vR  +a aLGr    ++ l + + p++lp Ll  L+   ++V Ra Aa  L+
  KOO22979.1 1348 PEVRSTGAKALGR---LCAGLGEEQFPDLLPWLLDSLSKGGSTVeRAGAAQGLA 1398
                  68999*******6...44677777777888888877777788999999998775 PP

  == domain 13  score: 0.0 bits;  conditional E-value: 1.2
     HEAT_EZ    3 vRraAawaLGrlaggepellqplvpeilpaLl 34  
                  +R++Aa +L+   ++ + l    v ++lp L+
  KOO22979.1 1389 ERAGAAQGLA---EVVGALGDAKVRQMLPTLI 1417
                  5999999**9...5555555555556666666 PP

  == domain 14  score: 5.9 bits;  conditional E-value: 0.018
     HEAT_EZ   23 qplvpeilpaLlalLnddsdeVRaaAaga 51  
                  +p++ e++p  la+L+dds +VR ++ +a
  KOO22979.1 1447 EPFLGEVIPVVLARLSDDSGAVRDTCMRA 1475
                  5777899******************9887 PP

  == domain 15  score: 1.8 bits;  conditional E-value: 0.35
     HEAT_EZ   20 ellqplvpeilpaLlalLnddsdeVRaaAagaLgnl 55  
                   +l+ +   +lp+L ++L+d + ++R+a+a  Lg l
  KOO22979.1 1482 IYLEAAAALLLPPLQRGLSDVNYRIRQASAELLGEL 1517
                  4677788899********7755599********986 PP

  == domain 16  score: 5.3 bits;  conditional E-value: 0.028
     HEAT_EZ   16 ggepellqplvpeilpaLlalLnddsdeVRaaAagaLgnl 55  
                  g++p +l+  +  +  +L+++L++++ + ++aAa a g l
  KOO22979.1 1582 GNAPKTLRIILVPLTEQLISGLSTEDEDQQQAAAQAMGEL 1621
                  677888888899999********************98875 PP

  == domain 17  score: 9.0 bits;  conditional E-value: 0.0019
     HEAT_EZ    3 vRraAawaLGrlaggepellqplvpeilpaLlalLnddsdeVRaaAagaLgn 54  
                  ++ aAa a+G   +  + l + ++p++lp L ++L++ +++ R  ++  L+ 
  KOO22979.1 1610 QQQAAAQAMG---ELVSKLSERVLPKLLPTLQQCLTSADAARRRGVCLGLSE 1658
                  6899******...8889******************98777668888877765 PP

  == domain 18  score: 22.2 bits;  conditional E-value: 1.4e-07
     HEAT_EZ    4 RraAawaLGr.laggepellqplvpeilpaLlalLnddsdeVRaaAagaLgnl 55  
                  Rr+++++L++ + + +++ + +++  i+p+   +L+d++++VR+aAa+ +++l
  KOO22979.1 1649 RRGVCLGLSElMVATGRDVITDFLGGIIPCVREGLCDEDSSVREAAARSFSQL 1701
                  899999**99977788999999****************************997 PP

  == domain 19  score: 9.1 bits;  conditional E-value: 0.0018
     HEAT_EZ   22 lqplvpeilpaLlalLnddsd.eV 44  
                   q+++ ei+paLl+lL++d++ +V
  KOO22979.1 1706 GQQAIYEIVPALLQLLRSDDAlLV 1729
                  689999*************99666 PP

  == domain 20  score: 8.1 bits;  conditional E-value: 0.0036
     HEAT_EZ    8 awaLGrlaggepellqplvpeilpaL 33  
                  a+aLG++a++++ +l+++++++lpaL
  KOO22979.1 1765 ARALGAVAEVAGAALHTHLDVVLPAL 1790
                  78**********************98 PP

  == domain 21  score: 10.2 bits;  conditional E-value: 0.00079
     HEAT_EZ    1 wrvRraAawaLGrlaggepel.lqplvpeilpaLlalLnddsd.eVRaaAagaLg 53  
                  +++R+  a+aLG++ g  +++ l+p+v +i  +L++   d  + +V+aa +++L+
  KOO22979.1 1971 PELREQSAAALGEAVGLTSPAaLKPYVIQITGPLIRIVGDRFPpAVKAAILHTLT 2025
                  689**********666666655******************999999****99997 PP

  == domain 22  score: 9.1 bits;  conditional E-value: 0.0018
     HEAT_EZ   21 llqplvpeilpaLlalLnddsdeVRaaAagaLgn 54  
                  ll+p+vp++   ++++L+d+ + VRa  a aL+ 
  KOO22979.1 2034 LLKPFVPQLQTTFVKALSDPAKVVRARGATALSH 2067
                  799**************98888889999999986 PP

  == domain 23  score: 6.6 bits;  conditional E-value: 0.011
     HEAT_EZ   27 peilpaLlalLnddsdeVRaaAagaLg 53  
                  p +  +L+ lL dd  eVR  A++aL 
  KOO22979.1 2261 PSLYGLLVELLADDVLEVRVSALHALK 2287
                  778899*******************95 PP

>> Cnd1  non-SMC mitotic condensation complex subunit 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.6   0.0   0.00021      0.22      61     156 ..     927    1028 ..     902    1034 .. 0.81
   2 ?    5.7   0.0     0.013        14      60     152 ..    1137    1230 ..    1128    1262 .. 0.71
   3 ?    1.6   0.0      0.25   2.6e+02      21      48 ..    1334    1361 ..    1316    1376 .. 0.88
   4 !    8.2   0.0    0.0023       2.4      15      88 ..    1446    1520 ..    1443    1531 .. 0.77
   5 !   14.6   0.0   2.5e-05     0.026      17     107 ..    1628    1724 ..    1612    1742 .. 0.85
   6 !    9.5   0.0   0.00092      0.97       7      88 ..    2027    2107 ..    2015    2149 .. 0.75
   7 ?   -3.6   0.0       9.5     1e+04      63      87 ..    2267    2291 ..    2262    2319 .. 0.67

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 0.00021
        Cnd1   61 selaklleDenprVvanalaalteisek..senaiynllpdiisklsd.....alnecsewgqitilefLlsyipkdkqeaeslveklcprlqhans 150 
                  + ++++l De+++V +  +aa  +i e+  + +a++++l  ++ ++++     + ++  ++g +  + +L+++ip+d+ +  ++v +l++ l +  s
  KOO22979.1  927 AFFKRALGDEHEMVAQQMVAAGRDIIERqsDAEAMVTMLVPLLESFLAepattEVHDRIRQGVVLYMGSLATHIPPDDPKVAQVVTRLMAALGTP-S 1022
                  557899**********************776688999999999999875644433347778889999**********************998654.4 PP

        Cnd1  151 avvlaa 156 
                  +vv ++
  KOO22979.1 1023 EVVQRT 1028
                  455555 PP

  == domain 2  score: 5.7 bits;  conditional E-value: 0.013
        Cnd1   60 lselaklleDenprVvanalaalteisek.senaiynllpdiisklsdalnecsewgqitilefLlsyipkdkq.eaeslveklcprlqhansav 152 
                  l +l+++++D +  V+  a++a + i ++ s + +  +lp++++ l  + +  ++ + ++ l +++ + pk+ + +  ++v +l++ l+h+ ++v
  KOO22979.1 1137 LPMLLTCVSDGSGPVRHAAVSASQRIMSQlSAQGVKMVLPSLLNALD-EEKWRTKHAAVELLGSMAYCAPKQLSaTLPQVVPRLTEALTHSHPKV 1230
                  45677777777777777777777777777665666666666666666.44557777777777777777777655234577777777777777665 PP

  == domain 3  score: 1.6 bits;  conditional E-value: 0.25
        Cnd1   21 ylvepLrkrLkDedpyVRktaaivvakL 48  
                  +l+++Lr+ L D+ p VR t a ++ +L
  KOO22979.1 1334 QLLPELRAVLLDPIPEVRSTGAKALGRL 1361
                  57899***************99999888 PP

  == domain 4  score: 8.2 bits;  conditional E-value: 0.0023
        Cnd1   15 vpnlveylvepLrkrLkDedpyVRktaaivvakLilndmvkekg.flselaklleDenprVvanalaalteisek 88  
                  ++ ++ ++++ + +rL+D++  VR t++ + + +i   +      +l  l++ l+D n r+++ +  +l e+ ++
  KOO22979.1 1446 FEPFLGEVIPVVLARLSDDSGAVRDTCMRAALGMIAIYLEAAAAlLLPPLQRGLSDVNYRIRQASAELLGELMQR 1520
                  555666667777788888888888888888888888777777777888888888888888888888888888776 PP

  == domain 5  score: 14.6 bits;  conditional E-value: 2.5e-05
        Cnd1   17 nlveylvepLrkrLkDedpyVRktaaivvakL...ilndmvkekg..flselaklleDenprVvanalaalteisek.senaiynllpdiisklsda 107 
                   ++ +l++ L+++L+  d+  R+   +++++L     +d++ +    ++  +++ l+De+++V++ a  +++++++  +++aiy+++p +++ l ++
  KOO22979.1 1628 RVLPKLLPTLQQCLTSADAARRRGVCLGLSELmvaTGRDVITDFLggIIPCVREGLCDEDSSVREAAARSFSQLQRIlGQQAIYEIVPALLQLLRSD 1724
                  566789999***********************877777888765335999999************************999*********99999864 PP

  == domain 6  score: 9.5 bits;  conditional E-value: 0.00092
        Cnd1    7 irtlgcirvpnlveylvepLrkrLkDedpyVRktaaivvakLilndmvkekgflselaklleDenprVvanalaalteisek 88  
                  ++t g+i ++ +v +l +   k+L+D+   VR   a ++++Li+    +++ +  e+ + l+  ++ V+   l+al  +++ 
  KOO22979.1 2027 LITKGSILLKPFVPQLQTTFVKALSDPAKVVRARGATALSHLISLA-TRVEPLATEIHNTLSTADAGVQVALLCALAGVLRG 2107
                  44445777777888888888899*******************9764.56778889999999888888888777777666555 PP

  == domain 7  score: -3.6 bits;  conditional E-value: 9.5
        Cnd1   63 laklleDenprVvanalaalteise 87  
                  l +ll D+  +V+ +al+al+ + +
  KOO22979.1 2267 LVELLADDVLEVRVSALHALKTMCK 2291
                  4455555555666666555555443 PP

>> CLASP_N  CLASP N terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.0      0.96     1e+03     182     225 ..     315     359 ..     307     361 .. 0.77
   2 !   11.4   0.0   0.00016      0.17      73     199 ..    1114    1237 ..    1045    1245 .. 0.86
   3 ?   -2.0   0.0         2   2.2e+03     132     195 ..    1293    1353 ..    1241    1359 .. 0.69
   4 !    5.7   0.0    0.0088       9.3      80     161 ..    1438    1521 ..    1424    1531 .. 0.82
   5 !   10.2   0.0   0.00038       0.4      53     211 ..    1553    1709 ..    1543    1717 .. 0.76
   6 !    8.6   0.1    0.0012       1.2      75     126 ..    2022    2073 ..    2015    2091 .. 0.80
   7 ?   -3.7   0.0       6.6     7e+03      98     205 ..    2266    2291 ..    2262    2295 .. 0.52

  Alignments for each domain:
  == domain 1  score: -0.9 bits;  conditional E-value: 0.96
     CLASP_N 182 kkgleDanptVRetaRstfweffkvwPsr.Aksllssldpkvrka 225
                  ++++ +  + R++a +++ ++  ++P + A++lls l++ v+ka
  KOO22979.1 315 FQLIAHPMAAPRRAADKALSQYVATMPCEaAERLLSALETVVKKA 359
                 55666667777899999999999999965167788******9997 PP

  == domain 2  score: 11.4 bits;  conditional E-value: 0.00016
     CLASP_N   73 gchllkelaiqlkeqldpmveillptLlkllgdtKkiisqnanqalaallsnasfs.pri.lqvlsvalqdKnvqpReysaiwLkilltrfeshksk 167 
                  ++h ++ l+++l++ ++p++  +lp+Ll++++d    ++++a  a + ++s++s +  ++ l  l +al +   +++  ++++L  +    +   ++
  KOO22979.1 1114 ALHAFECLCETLGRLFEPYIITILPMLLTCVSDGSGPVRHAAVSASQRIMSQLSAQgVKMvLPSLLNALDEEKWRTKHAAVELLGSMAYCAP---KQ 1207
                  67888889999****************************************999432466699999**************************...88 PP

     CLASP_N  168 leasllldliekslkkgleDanptVRetaRst 199 
                  l+a+l   ++++ l+++l+ + p+V+e a ++
  KOO22979.1 1208 LSATL--PQVVPRLTEALTHSHPKVKEGANAA 1237
                  88888..88*****************998765 PP

  == domain 3  score: -2.0 bits;  conditional E-value: 2
     CLASP_N  132 lqvlsvalqdKnvqpReysaiwLkilltrfeshkskleasllldliekslkkgleDanptVRet 195 
                  + vl  +l ++++q +  +++   ++ +  + +++ +   l   ++ + l+++l D+ p+VR+t
  KOO22979.1 1293 VPVLHRGLRERSAQGKRKASHITGNMCSLLS-ERRDIVPYL--GQLLPELRAVLLDPIPEVRST 1353
                  5566667777777777777777777777777.444444444..457889999999999999986 PP

  == domain 4  score: 5.7 bits;  conditional E-value: 0.0088
     CLASP_N   80 laiqlkeqldpmveillptLlkllgdtKkiisqn...anqalaallsnasfspri.lqvlsvalqdKnvqpReysaiwLkilltrf 161 
                  l i+l+++++p++  ++p+ l +l+d    ++ +   a+  + a++ +a     + l  l+ +l+d n+++R+ sa++L  l++r 
  KOO22979.1 1438 LPIVLGKRFEPFLGEVIPVVLARLSDDSGAVRDTcmrAALGMIAIYLEAA--AALlLPPLQRGLSDVNYRIRQASAELLGELMQRL 1521
                  678999*******************9999999771114444444544555..6777***********************9999886 PP

  == domain 5  score: 10.2 bits;  conditional E-value: 0.00038
     CLASP_N   53 qlleailkalssLrttlsstgchllkelaiqlkeqldpmveillptLlkllgdtKkiisqnanqalaallsnas..fspri.lqvlsvalqdKnvqp 146 
                   ll ai  a +++  ++ s++  l k l+    + l   +  l + L+  l+   +   q+a+qa+  l+s++s  + p++  ++ +++++   ++ 
  KOO22979.1 1553 ALLAAIYIARNDVHVAVRSASSTLWKALIGNAPKTLRIILVPLTEQLISGLSTEDEDQQQAAAQAMGELVSKLSerVLPKLlPTLQQCLTSADAARR 1649
                  5677777777777778888888888888888888888888888888999999999999999999999999998866668884444455555556666 PP

     CLASP_N  147 ReysaiwLkilltrfeshkskleasllldliekslkkgleDanptVRetaRstfweffkvwPsrA 211 
                  R +++++ ++++         ++  l+   i +++++gl D +++VRe+a   f ++ ++  ++A
  KOO22979.1 1650 RGVCLGLSELMVATGR---DVITDFLGG--IIPCVREGLCDEDSSVREAAARSFSQLQRILGQQA 1709
                  6666666666665555...667666655..9***********************99988877666 PP

  == domain 6  score: 8.6 bits;  conditional E-value: 0.0012
     CLASP_N   75 hllkelaiqlkeqldpmveillptLlkllgdtKkiisqnanqalaallsnas 126 
                  h+l  l+      l+p+v +l +t++k l+d  k++++ +++al+ l+s a+
  KOO22979.1 2022 HTLTLLITKGSILLKPFVPQLQTTFVKALSDPAKVVRARGATALSHLISLAT 2073
                  555555555555599*********************************9887 PP

  == domain 7  score: -3.7 bits;  conditional E-value: 6.6
     CLASP_N   98 tLlkllgdtKkiisqnanqalaallsnasfsprilqvlsvalqdKnvqpReysaiwLkilltrfeshkskleasllldliekslkkgleDanptVRe 194 
                  +L++ll+d    ++ +a +al+++                                                                         
  KOO22979.1 2266 LLVELLADDVLEVRVSALHALKTM------------------------------------------------------------------------- 2289
                  455555555555555555555555......................................................................... PP

     CLASP_N  195 taRstfweffk 205 
                            k
  KOO22979.1 2290 ---------CK 2291
                  .........44 PP

>> Adaptin_N  Adaptin N terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.9   0.0     0.015        15     338     421 ..     963    1055 ..     924    1073 .. 0.66
   2 !   13.0   0.0   2.7e-05     0.028     115     204 ..    1136    1226 ..    1123    1297 .. 0.89
   3 ?    1.1   0.0       0.1   1.1e+02     354     403 ..    1348    1399 ..    1332    1421 .. 0.79
   4 ?   -0.8   0.0      0.39   4.1e+02     343     394 ..    1598    1649 ..    1580    1664 .. 0.62
   5 !    6.2   0.0    0.0031       3.2     115     193 ..    1675    1755 ..    1667    1761 .. 0.82
   6 !    9.5   0.1    0.0003      0.32     111     188 ..    2038    2115 ..    2021    2204 .. 0.80
   7 ?   -3.7   0.0       3.1   3.3e+03     157     298 ..    2267    2293 ..    2255    2300 .. 0.51

  Alignments for each domain:
  == domain 1  score: 3.9 bits;  conditional E-value: 0.015
                  HHHHHHHHHHT.....TSSXXHHHHHHHHHHHHHHHHHS...CCHHHHHHHHHHHHHTTXXHHHHHHHHHHHHHHHHHSTTTSTTC...HHHHCC CS
   Adaptin_N  338 keivkeLkkyv.....kevadedfksklvkaIgrlaekf...atdaewvldvllellslsgesvkdeivevirdliqkvpelheei...iekLae 421 
                    +v  L +++     +ev+d+ +++ +v   g+la+ +    +++++v++ l+  l + +e v++ i +++  l++k p++++++   +++L +
  KOO22979.1  963 TMLVPLLESFLaepatTEVHDR-IRQGVVLYMGSLATHIppdDPKVAQVVTRLMAALGTPSEVVQRTISQSLASLVSK-PAVKANApeyLATLQK 1055
                  4466667777644445556555.8888888888888888555555666666666666667777777777777777765.4444544222444444 PP

  == domain 2  score: 13.0 bits;  conditional E-value: 2.7e-05
                  HHHHHHHHHT-SSHHHHHHHHHHHHHCCCC.CHHCCCCCHHHHHHHCTT-SSHHHHHHHHHHHHHH.HCCCCCCCHHHHHHHCCHHHHHHCS CS
   Adaptin_N  115 lapaikkllkdrspyvrkkAalailklykk.dpdllrkqlveeikellsdkdpgvvlaAvalleei.kkndrlllkllpklvrrLcnlltel 204 
                  ++p + ++++d s  vr +A+ a+ +++++ +++ +++ +++ + ++l++++ + + aAv ll ++  + ++ l+  lp+ v rL+++lt +
  KOO22979.1 1136 ILPMLLTCVSDGSGPVRHAAVSASQRIMSQlSAQGVKM-VLPSLLNALDEEKWRTKHAAVELLGSMaYCAPKQLSATLPQVVPRLTEALTHS 1226
                  678999**********************9945555555.7**************************99999999988888888888887554 PP

  == domain 3  score: 1.1 bits;  conditional E-value: 0.1
                  HHHHHHHHHHHHHHHHHS.CCHHHHHHHHHHHHHTTXXHHH.HHHHHHHHHH CS
   Adaptin_N  354 edfksklvkaIgrlaekf.atdaewvldvllellslsgesv.kdeivevird 403 
                  ++++s  +ka+grl+    ++++ + l++ll+ ls  g++v ++ +++ + +
  KOO22979.1 1348 PEVRSTGAKALGRLCAGLgEEQFPDLLPWLLDSLSKGGSTVeRAGAAQGLAE 1399
                  67999999*********99999*************99999955555555555 PP

  == domain 4  score: -0.8 bits;  conditional E-value: 0.39
                  HHHHHTTSSXXHHHHHHHHHHHHHHHHHS.CCHHHHHHHHHHHHHTTXXHHHH CS
   Adaptin_N  343 eLkkyvkevadedfksklvkaIgrlaekf.atdaewvldvllellslsgesvk 394 
                  +L + + ++ ded  +++++a g+l +k  +++  + l++l + l++++   +
  KOO22979.1 1598 QLISGL-STEDEDQQQAAAQAMGELVSKLsERVLPKLLPTLQQCLTSADAARR 1649
                  233333.5666667777777777777776666667777777777766665544 PP

  == domain 5  score: 6.2 bits;  conditional E-value: 0.0031
                  HHHHHHHHHT-SSHHHHHHHHHHHHHCCCCCHHCCCCCHHHHHHHCTT-SSHHHHHHHHHHHHHH.HCCCCCCC.HHHHHH CS
   Adaptin_N  115 lapaikkllkdrspyvrkkAalailklykkdpdllrkqlveeikellsdkdpgvvlaAvalleei.kkndrlll.kllpkl 193 
                  + p++++ l d++++vr +Aa ++ +l ++  ++   + v+ + +ll ++d ++v+   + l e+  + +++ +  llpkl
  KOO22979.1 1675 IIPCVREGLCDEDSSVREAAARSFSQLQRILGQQAIYEIVPALLQLLRSDDALLVAKGQNGLREVmGQRPQAVVpYLLPKL 1755
                  7899*************************9544432336*****************9999999997555555456666665 PP

  == domain 6  score: 9.5 bits;  conditional E-value: 0.0003
                  CHHHHHHHHHHHHT-SSHHHHHHHHHHHHHCCCCCHHCCCCCHHHHHHHCTT-SSHHHHHHHHHHHHHH.HCCCCCCC.H CS
   Adaptin_N  111 laedlapaikkllkdrspyvrkkAalailklykkdpdllrkqlveeikellsdkdpgvvlaAvalleei.kkndrlll.k 188 
                   +++l ++  k+l+d+  +vr   a+a+ +l+++     ++ l+ ei++ ls  d gv++a + +l  + +   + l+  
  KOO22979.1 2038 FVPQLQTTFVKALSDPAKVVRARGATALSHLISLATRV-EP-LATEIHNTLSTADAGVQVALLCALAGVlRGISQPLSeA 2115
                  56888999999***********************9988.77.7****************999988888875555554442 PP

  == domain 7  score: -3.7 bits;  conditional E-value: 3.1
                  HHHCTT-SSHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCHHHHHHCS-HHHHHHHHHHHCC---SSHHHH..HHHHHHHCGGCGCSSCHHHHHHHH CS
   Adaptin_N  157 ikellsdkdpgvvlaAvalleeikkndrlllkllpklvrrLcnllteldpwlqvkiiklltrlarqepeerskkellesllnllqssnnaVlletvn 253 
                  ++ell+d+   v ++A+++l+ +                                                                          
  KOO22979.1 2267 LVELLADDVLEVRVSALHALKTM-------------------------------------------------------------------------- 2289
                  33444444444444444444444.......................................................................... PP

                  HCCHCCCCSTHHHCCHHCHHHHHHSSCCTCHHHHHCHHHHHHHHX CS
   Adaptin_N  254 livelapknelivlavnaLvrllsskdenlryvaLrtllkivkke 298 
                                                           +k +
  KOO22979.1 2290 -----------------------------------------CKLR 2293
                  .........................................3333 PP

>> Vac14_Fab1_bd  Vacuolar 14 Fab1-binding region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.1   0.0   0.00044      0.47       2      49 ..    1110    1157 ..    1109    1167 .. 0.92
   2 !    7.7   0.0    0.0049       5.2      21      89 ..    1167    1235 ..    1154    1238 .. 0.90
   3 ?   -1.5   0.0       3.7   3.9e+03      59      94 ..    1325    1361 ..    1320    1363 .. 0.86
   4 ?    5.0   0.0     0.035        37      12      47 ..    1437    1472 ..    1426    1520 .. 0.78
   5 !    9.9   0.0     0.001       1.1       2      68 ..    1648    1715 ..    1647    1740 .. 0.83
   6 ?   -0.1   0.0       1.4   1.5e+03      15      96 ..    1822    1904 ..    1813    1905 .. 0.71

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00044
  Vac14_Fab1_bd    2 arkggligLaavaialekkikeyleeivkpvlkcfsDkdsrvRyyacE 49  
                     ar+g+l+++ ++  +l++  ++y+ +i++++l+c+sD +  vR+ a+ 
     KOO22979.1 1110 AREGALHAFECLCETLGRLFEPYIITILPMLLTCVSDGSGPVRHAAVS 1157
                     79*****************************************99876 PP

  == domain 2  score: 7.7 bits;  conditional E-value: 0.0049
  Vac14_Fab1_bd   21 ikeyleeivkpvlkcfsDkdsrvRyyacEslyniakvakgevlkllneifdalvklvaDsdesvksgae 89  
                     +++ ++ +++++l++++++  r+++ a+E l  +a  a +++  +l ++   l++ ++ s+++vk+ga+
     KOO22979.1 1167 SAQGVKMVLPSLLNALDEEKWRTKHAAVELLGSMAYCAPKQLSATLPQVVPRLTEALTHSHPKVKEGAN 1235
                     667789999**********************************************************97 PP

  == domain 3  score: -1.5 bits;  conditional E-value: 3.7
  Vac14_Fab1_bd   59 kgevlkllneifdalvklvaDsdesvks.gaelldrl 94  
                     + +++ +l +++  l  ++ D  ++v+s ga+ l rl
     KOO22979.1 1325 RRDIVPYLGQLLPELRAVLLDPIPEVRStGAKALGRL 1361
                     6789999*******************96478888876 PP

  == domain 4  score: 5.0 bits;  conditional E-value: 0.035
  Vac14_Fab1_bd   12 avaialekkikeyleeivkpvlkcfsDkdsrvRyya 47  
                      + i l+k+ +++l e++++vl+ +sD++  vR + 
     KOO22979.1 1437 HLPIVLGKRFEPFLGEVIPVVLARLSDDSGAVRDTC 1472
                     567899***********************9999665 PP

  == domain 5  score: 9.9 bits;  conditional E-value: 0.001
  Vac14_Fab1_bd    2 arkggligLaavaialekk.ikeyleeivkpvlkcfsDkdsrvRyyacEslyniakvakgevlkllne 68  
                     +r+g  +gL  + +a +++ i+++l  i++ v + + D+ds vR  a+ s+  + +++ ++++  +  
     KOO22979.1 1648 RRRGVCLGLSELMVATGRDvITDFLGGIIPCVREGLCDEDSSVREAAARSFSQLQRILGQQAIYEIVP 1715
                     5889999**********9999*********************************99999988765543 PP

  == domain 6  score: -0.1 bits;  conditional E-value: 1.4
  Vac14_Fab1_bd   15 ialekkikeyleeivkpvlkcfsDkdsrvRyyacEslyniakvakgevlkllneifdalvklvaDsdesv.ksgaelldrllk 96  
                     +al+ +++     i ++  ++ + + ++vR  a+  +  ++k +  ++  + +++ + l+ ++  +++ v +sg + ld+l+k
     KOO22979.1 1822 VALAVQADGLHFLIGEIRTATTTKAKAHVRIAAAALIETVCKSSTLDLSVHHSNLIQSLIGMFHAEEPAVqRSGIRGLDNLIK 1904
                     44444444333333333344556677889999998888999999999888999999999999999999994578999**9998 PP

>> UME  UME (NUC010) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   0.0       9.1   9.6e+03      53      79 ..    1009    1037 ..    1004    1058 .. 0.40
   2 !    9.5   0.0   0.00085       0.9       8      95 ..    1089    1179 ..    1085    1183 .. 0.88
   3 ?    3.8   0.0     0.049        52      25      97 ..    1186    1260 ..    1178    1263 .. 0.80
   4 ?    4.7   0.0     0.027        29      25      96 ..    1645    1719 ..    1589    1723 .. 0.81
   5 ?   -2.6   0.0       4.8   5.1e+03      21      45 ..    1885    1908 ..    1873    1927 .. 0.76
   6 ?    1.8   0.0      0.21   2.2e+02      25      65 ..    2013    2053 ..    1971    2088 .. 0.81
   7 ?    0.9   0.0      0.41   4.4e+02      70      96 ..    2176    2202 ..    2163    2206 .. 0.88

  Alignments for each domain:
  == domain 1  score: -3.4 bits;  conditional E-value: 9.1
         UME   53 qimacLqsalei..delrsaalsvWatll 79  
                  q+++ L+ al +  + +++   +  a+l+
  KOO22979.1 1009 QVVTRLMAALGTpsEVVQRTISQSLASLV 1037
                  44455555544421122222222222222 PP

  == domain 2  score: 9.5 bits;  conditional E-value: 0.00085
         UME    8 giltrlseklnds.hgkkslaekkraikaleeliklagssissalpqimacLqsalei..delrsaalsvWatllsnlededleplleqtf 95  
                  g++t l+  ++++ +g++  + ++ a++a e l + +g   ++++  i+ +L +++++  + +r aa+s+ +  +s+l+ + ++++l++++
  KOO22979.1 1089 GVMTALQAAVESKaKGEQAADAREGALHAFECLCETLGRLFEPYIITILPMLLTCVSDgsGPVRHAAVSASQRIMSQLSAQGVKMVLPSLL 1179
                  788888888865515667999***********************************996679**********************9998865 PP

  == domain 3  score: 3.8 bits;  conditional E-value: 0.049
         UME   25 slaekkraikaleeliklagssissalpqimacLqsalei..delrsaalsvWatllsnlededleplleqtfal 97  
                  +  +k  a++ l+ +   a +++s  lpq++  L  al +  +++++ a  +  +    +++ ++ +l+++++a+
  KOO22979.1 1186 KWRTKHAAVELLGSMAYCAPKQLSATLPQVVPRLTEALTHshPKVKEGANAALGSVGAVIKNPEIAQLVPTLLAA 1260
                  567899999999***9999*******************9966788888877777777777777777777777766 PP

  == domain 4  score: 4.7 bits;  conditional E-value: 0.027
         UME   25 slaekkraikaleeliklagss.issalpqimacLqsalei..delrsaalsvWatllsnlededleplleqtfa 96  
                  + a ++ +  +l+el+   g   i+ +l  i+ c + +l++    +r+aa + ++ l ++l ++++ +++++++ 
  KOO22979.1 1645 DAARRRGVCLGLSELMVATGRDvITDFLGGIIPCVREGLCDedSSVREAAARSFSQLQRILGQQAIYEIVPALLQ 1719
                  455666677788888888887778889999999999999995458999999999999999999999998887765 PP

  == domain 5  score: -2.6 bits;  conditional E-value: 4.8
         UME   21 hgkkslaekkraikaleeliklags 45  
                  h + ++a ++  i++l  lik + +
  KOO22979.1 1885 HAE-EPAVQRSGIRGLDNLIKSLPK 1908
                  555.66789999******9997655 PP

  == domain 6  score: 1.8 bits;  conditional E-value: 0.21
         UME   25 slaekkraikaleeliklagssissalpqimacLqsaleid 65  
                  ++a k  +++ l  li   +  +++++pq+ +++  al+++
  KOO22979.1 2013 PPAVKAAILHTLTLLITKGSILLKPFVPQLQTTFVKALSDP 2053
                  7788999999999999999999****************995 PP

  == domain 7  score: 0.9 bits;  conditional E-value: 0.41
         UME   70 aalsvWatllsnlededleplleqtfa 96  
                   al+ +++ll+n  +++l+pll+++f 
  KOO22979.1 2176 RALRGYQSLLRNAPVAALKPLLSTIFD 2202
                  68999*******************995 PP

>> MMS19_C  RNAPII transcription regulator C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.1   0.0    0.0095        10     140     248 ..     958    1063 ..     938    1087 .. 0.71
   2 !    5.5   0.0    0.0073       7.7       5     127 ..    1096    1204 ..    1091    1214 .. 0.77
   3 !    7.2   0.2    0.0022       2.3     333     421 ..    1174    1258 ..    1171    1264 .. 0.80
   4 !    6.0   0.1    0.0053       5.6     332     390 ..    1214    1268 ..    1211    1282 .. 0.82
   5 !    7.0   0.0    0.0027       2.8     334     400 ..    1596    1658 ..    1591    1679 .. 0.75
   6 ?    2.2   0.1     0.074        78     355     422 ..    1980    2048 ..    1964    2049 .. 0.87
   7 ?   -0.7   0.0      0.57     6e+02     341     367 ..    2082    2112 ..    2073    2135 .. 0.79
   8 ?   -4.1   0.1       5.8   6.1e+03     373     404 ..    2261    2292 ..    2261    2299 .. 0.78

  Alignments for each domain:
  == domain 1  score: 5.1 bits;  conditional E-value: 0.0095
     MMS19_C  140 leevvalfltgdaskkfeplsesasesqkqliilftailaa.lrkevklpdlsellnellellaseaespflrlaylrllallvNKflkdedlsell 235 
                  +e++v++++   +s+  ep +++ +   +q ++l++  la  ++++   p++++++++l+   a  + s+  + ++++ la+lv K + +++ +e+l
  KOO22979.1  958 AEAMVTMLVPLLESFLAEPATTEVHDRIRQGVVLYMGSLAThIPPD--DPKVAQVVTRLMA--ALGTPSEVVQRTISQSLASLVSKPAVKANAPEYL 1050
                  5555555555555555555555555555555566666666523333..3689999999999..66678999999999*********88889999999 PP

     MMS19_C  236 dellesieeslie 248 
                  + l+++++++ + 
  KOO22979.1 1051 ATLQKTLTTTPSY 1063
                  9999998887665 PP

  == domain 2  score: 5.5 bits;  conditional E-value: 0.0073
     MMS19_C    5 atLpdsaseasasa.yervLeaLaelss.ekqlfetlvirllnkldlvlksnessaayahailstllkllekkqtdlekeellnsyydrivprlltl 99  
                  a ++++a++++a+  +e +L+a++ l++   +lfe  +i +l  l +++++  s     ha +s+ ++++++           ++ ++ ++p+ll+ 
  KOO22979.1 1096 AAVESKAKGEQAADaREGALHAFECLCEtLGRLFEPYIITILPMLLTCVSDG-S-GPVRHAAVSASQRIMSQLS---------AQGVKMVLPSLLNA 1181
                  55666666665555799***********899**************6555555.4.5788999999999999977.........88999999999999 PP

     MMS19_C  100 vvsaastsssiltddrllevlgriinli 127 
                       +++++ +t+++++e+lg++   +
  KOO22979.1 1182 -----LDEEKWRTKHAAVELLGSMAYCA 1204
                  .....33334899999999998876655 PP

  == domain 3  score: 7.2 bits;  conditional E-value: 0.0022
     MMS19_C  333 vlpklvegfkssdsetkenyLvALshllkhvPkslllpeLptLlPlLlqaLdlpdaevk...astLetlksileespslvsehlssLvprLL 421 
                  vlp l+++  +++  tk +    L ++    Pk+l    Lp+++P L +aL+ + ++vk   +++L  + +++++      + +++Lvp+LL
  KOO22979.1 1174 VLPSLLNALDEEKWRTKHAAVELLGSMAYCAPKQLS-ATLPQVVPRLTEALTHSHPKVKegaNAALGSVGAVIKN------PEIAQLVPTLL 1258
                  789999999999999999998899999888898875.6799**********999999997777888888888884......45556666666 PP

  == domain 4  score: 6.0 bits;  conditional E-value: 0.0053
     MMS19_C  332 tvlpklvegfkssdsetkenyLvALshllkhvPkslllpeLptLlPlLlqaLdlpdaev 390 
                  +v+p+l e+   s+++ ke    AL ++ + + +    pe+ +L+P+Ll aL+ p+++ 
  KOO22979.1 1214 QVVPRLTEALTHSHPKVKEGANAALGSVGAVIKN----PEIAQLVPTLLAALSEPSTKT 1268
                  6889999999999999999999999887766654....899999999999999888874 PP

  == domain 5  score: 7.0 bits;  conditional E-value: 0.0027
     MMS19_C  334 lpklvegfkssdsetkenyLvALshllkhvPkslllpeLptLlPlLlqaLdlpdaevkastLetlks 400 
                  + +l++g +++d++++++   A+  l++++++ +    Lp+LlP+L q+L+  da+ ++ +   l++
  KOO22979.1 1596 TEQLISGLSTEDEDQQQAAAQAMGELVSKLSERV----LPKLLPTLQQCLTSADAARRRGVCLGLSE 1658
                  5678999999999999999999999999888877....8*************999877666555544 PP

  == domain 6  score: 2.2 bits;  conditional E-value: 0.074
     MMS19_C  355 ALshllkhvPkslllpeLptLlPlLlqaL.dlpdaevkastLetlksileespslvsehlssLvprLLk 422 
                  AL   +  ++++ l p+  ++   L++   d   ++vka+ L+tl+ ++++ + l+++++ +L ++++k
  KOO22979.1 1980 ALGEAVGLTSPAALKPYVIQITGPLIRIVgDRFPPAVKAAILHTLTLLITKGSILLKPFVPQLQTTFVK 2048
                  667777778889999999999999999999999999**************9999999999999887765 PP

  == domain 7  score: -0.7 bits;  conditional E-value: 0.57
     MMS19_C  341 fks....sdsetkenyLvALshllkhvPksl 367 
                  +++    +d   + + L+AL+++l+ +++ l
  KOO22979.1 2082 IHNtlstADAGVQVALLCALAGVLRGISQPL 2112
                  444444499999999999****999998766 PP

  == domain 8  score: -4.1 bits;  conditional E-value: 5.8
     MMS19_C  373 ptLlPlLlqaLdlpdaevkastLetlksilee 404 
                  p+L  lL++ L+ +  ev+ s+L+ lk +++ 
  KOO22979.1 2261 PSLYGLLVELLADDVLEVRVSALHALKTMCKL 2292
                  67888999999999999999999999988764 PP

>> ParcG  Parkin co-regulated protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.5   0.0   0.00095         1      37     107 ..    1172    1241 ..    1144    1292 .. 0.74
   2 ?   -0.8   0.0       1.3   1.4e+03      42     130 ..    1295    1340 ..    1266    1345 .. 0.56
   3 ?    0.4   0.0      0.58   6.2e+02      40     103 ..    1293    1357 ..    1284    1383 .. 0.69
   4 ?   -3.1   0.0       6.8   7.2e+03      39      82 ..    1373    1417 ..    1363    1419 .. 0.75
   5 !    6.2   0.0    0.0098        10      38      95 ..    1594    1647 ..    1556    1672 .. 0.58
   6 ?    3.8   0.0     0.052        55      39      87 ..    1675    1723 ..    1668    1728 .. 0.91

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 0.00095
       ParcG   37 dalLplffdGlretkhpyrflategikdlleaageekilpvlpklilplkeaLntrdeeviesaLkvlqkl 107 
                  + +Lp +++ l e+k   +  a+e +  +    + +++  +lp+++  l eaL++++++v e a  +l  +
  KOO22979.1 1172 KMVLPSLLNALDEEKWRTKHAAVELLGSMAYC-APKQLSATLPQVVPRLTEALTHSHPKVKEGANAALGSV 1241
                  57899999999999999988888888887766.999************************98877776555 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 1.3
       ParcG   42 lffdGlretkhpyrflategikdlleaageekilpvlpklilplkeaLntrdeeviesaLkvlqklvkaseligeaLvpyyrqlLpvln 130 
                  ++                                          ++ L+ r+ +   +a ++  ++  +  + ++ +vpy+ qlLp l+
  KOO22979.1 1295 VL------------------------------------------HRGLRERSAQGKRKASHITGNM-CSLLSERRDIVPYLGQLLPELR 1340
                  33..........................................3444444444333333333333.2222234456666666666555 PP

  == domain 3  score: 0.4 bits;  conditional E-value: 0.58
       ParcG   40 LplffdGlretkhpyrflategikdllea.ageekilpvlpklilplkeaLntrdeeviesaLkv 103 
                  +p++  Glre +   +  a + + ++ +  + ++ i+p l +l   l++ L    +ev  +  k+
  KOO22979.1 1293 VPVLHRGLRERSAQGKRKASHITGNMCSLlSERRDIVPYLGQLLPELRAVLLDPIPEVRSTGAKA 1357
                  56666777777777666666666666555445667777777777777777766666665555555 PP

  == domain 4  score: -3.1 bits;  conditional E-value: 6.8
       ParcG   39 lLplffdGlretkhpy.rflategikdlleaageekilpvlpkli 82  
                  lLp ++d l++      r+ a +g+ +++ a g+ k+ ++lp li
  KOO22979.1 1373 LLPWLLDSLSKGGSTVeRAGAAQGLAEVVGALGDAKVRQMLPTLI 1417
                  56666666655544331566899999999999999*******998 PP

  == domain 5  score: 6.2 bits;  conditional E-value: 0.0098
       ParcG   38 alLplffdGlretkhpyrflategikdlleaageekilpvlpklilplkeaLntrdee 95  
                  +l   ++ Gl+ ++++ +  a +++ +l+++ +e     vlpkl   l++ L++ d +
  KOO22979.1 1594 PLTEQLISGLSTEDEDQQQAAAQAMGELVSKLSE----RVLPKLLPTLQQCLTSADAA 1647
                  3334456677777777777777777777777444....45666666666666666554 PP

  == domain 6  score: 3.8 bits;  conditional E-value: 0.052
       ParcG   39 lLplffdGlretkhpyrflategikdlleaageekilpvlpklilplke 87  
                  ++p + +Gl++++   r  a + +++l +  g++ i +++p l   l++
  KOO22979.1 1675 IIPCVREGLCDEDSSVREAAARSFSQLQRILGQQAIYEIVPALLQLLRS 1723
                  578899*********************999************9988775 PP

>> RTP1_C1  Required for nuclear transport of RNA pol II C-terminus 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.2   0.0      0.37   3.9e+02       5      83 ..    1141    1216 ..    1137    1235 .. 0.83
   2 ?   -2.5   0.0       5.5   5.8e+03       8      50 ..    1343    1382 ..    1339    1418 .. 0.68
   3 ?    0.6   0.0      0.59   6.2e+02      46      85 ..    1600    1639 ..    1561    1664 .. 0.71
   4 ?   -0.0   0.0      0.91   9.6e+02       9      81 ..    1684    1753 ..    1679    1774 .. 0.80
   5 ?    5.7   0.1     0.016        17      12      95 ..    1847    1930 ..    1822    1934 .. 0.88
   6 ?    4.8   0.1     0.029        30       4      33 ..    2046    2075 ..    2014    2125 .. 0.86
   7 ?    0.9   0.0      0.49   5.2e+02      59     108 ..    2176    2229 ..    2175    2232 .. 0.74
   8 ?    0.8   0.0      0.52   5.5e+02       5      30 ..    2268    2293 ..    2265    2314 .. 0.87

  Alignments for each domain:
  == domain 1  score: 1.2 bits;  conditional E-value: 0.37
     RTP1_C1    5 lkdlqdpllpvrahglvlLrkliekkskeavldiekilkllleaLkdedsYvYLnaikgLvaLadvfpeevlklLleey 83  
                  l+ ++d   pvr  +++  ++++++ s   ++ ++ +l  ll+aL +e      +a+++L ++a   p++   +L + +
  KOO22979.1 1141 LTCVSDGSGPVRHAAVSASQRIMSQLS---AQGVKMVLPSLLNALDEEKWRTKHAAVELLGSMAYCAPKQLSATLPQVV 1216
                  566788889999999999888888887...88999999999999999998899999********999999998887766 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 5.5
     RTP1_C1    8 lqdpllpvrahglvlLrkliekkskeavldiekilkllleaLk 50  
                  l dp++ vr+ g   L +l+       +++ + +l  ll++L+
  KOO22979.1 1343 LLDPIPEVRSTGAKALGRLCAGLG---EEQFPDLLPWLLDSLS 1382
                  568888889888888888887765...5555555555555555 PP

  == domain 3  score: 0.6 bits;  conditional E-value: 0.59
     RTP1_C1   46 leaLkdedsYvYLnaikgLvaLadvfpeevlklLleeyee 85  
                  ++ L+ ed+    +a +++ +L+++ +e+vl++Ll   ++
  KOO22979.1 1600 ISGLSTEDEDQQQAAAQAMGELVSKLSERVLPKLLPTLQQ 1639
                  55555555555568999*****************988744 PP

  == domain 4  score: -0.0 bits;  conditional E-value: 0.91
     RTP1_C1    9 qdpllpvrahglvlLrkliekkskeavldiekilkllleaLkdedsYvYLnaikgLvaLadvfpeevlklLle 81  
                   d+   vr  + ++ ++l +      ++ i +i+  ll+ L+ +d  +  +  +gL +++   p+ v++ Ll 
  KOO22979.1 1684 CDEDSSVREAAARSFSQLQRILG---QQAIYEIVPALLQLLRSDDALLVAKGQNGLREVMGQRPQAVVPYLLP 1753
                  56666666666666666655554...6679999999*********9999999999999999999999999975 PP

  == domain 5  score: 5.7 bits;  conditional E-value: 0.016
     RTP1_C1   12 llpvrahglvlLrkliekkskeavldiekilkllleaLkdedsYvYLnaikgLvaLadvfpeevlklLleeyeeenekeslder 95  
                   ++vr  +  l+++++++++ +  ++ +++++ l+ + + e++ v  + i+gL +L++  p+e  +l +++ +e+ ++ s+++r
  KOO22979.1 1847 KAHVRIAAAALIETVCKSSTLDLSVHHSNLIQSLIGMFHAEEPAVQRSGIRGLDNLIKSLPKERYPLHVAALREAVKSVSTEHR 1930
                  5678888888899999999988999**************************************999999999888877777766 PP

  == domain 6  score: 4.8 bits;  conditional E-value: 0.029
     RTP1_C1    4 alkdlqdpllpvrahglvlLrkliekkske 33  
                   +k l+dp   vra+g + L++li+  ++ 
  KOO22979.1 2046 FVKALSDPAKVVRARGATALSHLISLATRV 2075
                  5788999*9*************99877644 PP

  == domain 7  score: 0.9 bits;  conditional E-value: 0.49
     RTP1_C1   59 naikgLvaLadvfpeevlklLleey....eeenekeslderlkvGEaLlrvirr 108 
                   a +g  +L    p   lk Ll+       e++++e++d r+ ++ aL+rv+ +
  KOO22979.1 2176 RALRGYQSLLRNAPVAALKPLLSTIfdavGEAAKHEKIDLRMPASHALVRVAVN 2229
                  56667777777777666665555544665999999***************9765 PP

  == domain 8  score: 0.8 bits;  conditional E-value: 0.52
     RTP1_C1    5 lkdlqdpllpvrahglvlLrkliekk 30  
                  ++ l d+ l vr+ +l+ L+++++ +
  KOO22979.1 2268 VELLADDVLEVRVSALHALKTMCKLR 2293
                  57899***************998865 PP

>> DUF3535  Domain of unknown function (DUF3535)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.1         3   3.1e+03     253     271 ..     519     537 ..     495     585 .. 0.41
   2 !    7.1   0.2    0.0025       2.7     368     423 ..    1058    1127 ..     995    1143 .. 0.63
   3 ?   -3.7   0.1       5.1   5.4e+03     105     141 ..    1185    1223 ..    1156    1227 .. 0.64
   4 ?    1.7   0.0      0.11   1.2e+02     105     153 ..    1346    1394 ..    1278    1418 .. 0.71
   5 ?   -3.4   0.0         4   4.2e+03     105     128 ..    1502    1525 ..    1492    1531 .. 0.71
   6 !    8.1   0.0    0.0013       1.4     112     186 ..    1613    1706 ..    1605    1743 .. 0.73

  Alignments for each domain:
  == domain 1  score: -3.0 bits;  conditional E-value: 3
     DUF3535 253 kslslkqkllaekqLeerr 271
                 ks s+kq ++ e qLee++
  KOO22979.1 519 KSSSSKQDAQRERQLEEEK 537
                 1122222222222222221 PP

  == domain 2  score: 7.1 bits;  conditional E-value: 0.0025
     DUF3535  368 setPef..............kkegIltlkkeedkaeaadaaeeeeeakeariqrrGAelaLetlakkFga 423 
                  + tP                k  gI +lk++   ++ ++a e++ + ++a  +r GA +a+e l+++ g 
  KOO22979.1 1058 TTTPSYaerrgaafglagvvKGLGIPSLKQHGVMTALQAAVESKAKGEQAADAREGALHAFECLCETLGR 1127
                  4455556666666677777766677777776665555555666666667888*************99773 PP

  == domain 3  score: -3.7 bits;  conditional E-value: 5.1
     DUF3535  105 nviraRiaaakaLGlllsylpees..pldcytkvLlghL 141 
                     r++ aa ++LG ++ + p++    l ++   L + L
  KOO22979.1 1185 EKWRTKHAAVELLGSMAYCAPKQLsaTLPQVVPRLTEAL 1223
                  467999999999999988885443225556666665555 PP

  == domain 4  score: 1.7 bits;  conditional E-value: 0.11
     DUF3535  105 nviraRiaaakaLGlllsylpeespldcytkvLlghLns.ksalqrlvaa 153 
                   + + R ++akaLG+l++ l ee+   ++   Ll  L+   s ++r  aa
  KOO22979.1 1346 PIPEVRSTGAKALGRLCAGLGEEQ-FPDLLPWLLDSLSKgGSTVERAGAA 1394
                  466899************998665.8888888888776514555555555 PP

  == domain 5  score: -3.4 bits;  conditional E-value: 4
     DUF3535  105 nviraRiaaakaLGlllsylpees 128 
                  +  r R a+a++LG l++ l+  +
  KOO22979.1 1502 VNYRIRQASAELLGELMQRLTGGD 1525
                  556778888888888887775544 PP

  == domain 6  score: 8.1 bits;  conditional E-value: 0.0013
     DUF3535  112 aaakaLGlllsylpeespldcytkvLlghLnsksalqrlvaalvieewakedkkekk....................evstlpetlqeklleiLe 186 
                  aaa+a+G l+s+l  e  l ++  +L+++L+s+ a +r  ++l ++e + ++ ++                      +v+ ++++  ++l+ iL 
  KOO22979.1 1613 AAAQAMGELVSKLS-ERVLPKLLPTLQQCLTSADAARRRGVCLGLSELMVATGRDVItdflggiipcvreglcdedsSVREAAARSFSQLQRILG 1706
                  79***********8.666*********************99999999988876443366666666666666666555444455555555555555 PP

>> Cohesin_HEAT  HEAT repeat associated with sister chromatid cohesion
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.8   0.0     0.069        73      18      37 ..    1452    1471 ..    1442    1472 .. 0.89
   2 !    7.3   0.1    0.0055       5.8      25      38 ..    1681    1694 ..    1677    1694 .. 0.91
   3 ?    0.6   0.0      0.68   7.2e+02      13      36 ..    2033    2059 ..    2023    2059 .. 0.76

  Alignments for each domain:
  == domain 1  score: 3.8 bits;  conditional E-value: 0.069
                    HHHHHHHHHHHSS-HHHHHH CS
  Cohesin_HEAT   18 evldtiarrltDsspsVRdA 37  
                    ev+ ++ +rl+D s  VRd+
    KOO22979.1 1452 EVIPVVLARLSDDSGAVRDT 1471
                    7999**************97 PP

  == domain 2  score: 7.3 bits;  conditional E-value: 0.0055
                    HHHHSS-HHHHHHH CS
  Cohesin_HEAT   25 rrltDsspsVRdAa 38  
                    + l+D+++sVR+Aa
    KOO22979.1 1681 EGLCDEDSSVREAA 1694
                    679**********8 PP

  == domain 3  score: 0.6 bits;  conditional E-value: 0.68
                    GGGSH...HHHHHHHHHHHSS-HHHHH CS
  Cohesin_HEAT   13 iLsap...evldtiarrltDsspsVRd 36  
                    iL  p   +++ t+ + l+D++ +VR+
    KOO22979.1 2033 ILLKPfvpQLQTTFVKALSDPAKVVRA 2059
                    5555666699************99995 PP

>> Dopey_N  Dopey, N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.1   0.0      0.16   1.7e+02      91     164 ..    1130    1200 ..    1110    1219 .. 0.72
   2 !    6.1   0.0    0.0049       5.2     112     171 ..    1569    1631 ..    1563    1660 .. 0.78
   3 ?    3.8   0.0     0.025        27     120     176 ..    1656    1713 ..    1628    1725 .. 0.79
   4 ?   -2.5   0.0       2.1   2.2e+03     108     168 ..    1846    1906 ..    1830    1924 .. 0.63

  Alignments for each domain:
  == domain 1  score: 1.1 bits;  conditional E-value: 0.16
     Dopey_N   91 skdlslylpGLlpllsyaslsvkpqlleliekyllpLg.ekLrpalkglilslLpGLeeensevfertlkllekl 164 
                     +   lp Ll  +s +s  v+   ++  ++ + +L+ + ++++    + slL +L+ee+   ++ +++ll ++
  KOO22979.1 1130 EPYIITILPMLLTCVSDGSGPVRHAAVSASQRIMSQLSaQGVKMV----LPSLLNALDEEKWRTKHAAVELLGSM 1200
                  445555566777778888888999999999999999986666655....55778888998888888888887665 PP

  == domain 2  score: 6.1 bits;  conditional E-value: 0.0049
     Dopey_N  112 vkpqlleliekyllpLgekLrpalkglilslLpGLeeensevfertlklleklkekvge...k 171 
                  v++   +l +  + + +++Lr +l +l   l++GL  e+++ ++ + + + +l +k++e    
  KOO22979.1 1569 VRSASSTLWKALIGNAPKTLRIILVPLTEQLISGLSTEDEDQQQAAAQAMGELVSKLSErvlP 1631
                  66666667777777889*********************************9999999985553 PP

  == domain 3  score: 3.8 bits;  conditional E-value: 0.025
     Dopey_N  120 iekyllpLg.ekLrpalkglilslLpGLeeensevfertlklleklkekvgekyfyqc 176 
                  + + ++  g + +  +l g+i ++  GL +e+s v e + + + +l++++g++  y+ 
  KOO22979.1 1656 LSELMVATGrDVITDFLGGIIPCVREGLCDEDSSVREAAARSFSQLQRILGQQAIYEI 1713
                  5556666665778899************************************999875 PP

  == domain 4  score: -2.5 bits;  conditional E-value: 2.1
     Dopey_N  108 aslsvkpqlleliekyllpLgekLrpalkglilslLpGLeeensevfertlklleklkekv 168 
                  a+ +v+     lie+   +   +L +  + li sl+  +  e+  v+++ ++ l++l +++
  KOO22979.1 1846 AKAHVRIAAAALIETVCKSSTLDLSVHHSNLIQSLIGMFHAEEPAVQRSGIRGLDNLIKSL 1906
                  5555566666666655555555666666666666666666666666666666555555444 PP

>> DUF3437  Domain of unknown function (DUF3437)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.6   0.2       0.5   5.2e+02       8      35 ..      36      66 ..      31      82 .. 0.80
   2 ?   -0.1   0.0      0.82   8.6e+02       4      52 ..     986    1034 ..     983    1037 .. 0.78
   3 ?    6.2   0.1    0.0093       9.8       3      51 ..    1189    1238 ..    1187    1240 .. 0.88

  Alignments for each domain:
  == domain 1  score: 0.6 bits;  conditional E-value: 0.5
     DUF3437  8 vlgls.AlvlafpydvP..kwlpevleeLar 35
                vl+l   l++a p +vP  + +p++le+L  
  KOO22979.1 36 VLALMpPLLEALPATVPigASMPSLLEALQP 66
                5554425899*****************9975 PP

  == domain 2  score: -0.1 bits;  conditional E-value: 0.82
     DUF3437    4 rhaavlglsAlvlafpydvPkwlpevleeLaraardpa.pirktvkktls 52  
                  r++ vl +++l +  p d Pk + +v+++L +a  +p+  +++t+++ l+
  KOO22979.1  986 RQGVVLYMGSLATHIPPDDPK-VAQVVTRLMAALGTPSeVVQRTISQSLA 1034
                  678899999999999999886.6778888877777777689999988775 PP

  == domain 3  score: 6.2 bits;  conditional E-value: 0.0093
     DUF3437    3 erhaavlglsAlvlafpydvPkwlpevleeLaraardpa.pirktvkktl 51  
                  ++haav  l+++    p ++ + lp+v+ +L++a ++++ ++++ ++ +l
  KOO22979.1 1189 TKHAAVELLGSMAYCAPKQLSATLPQVVPRLTEALTHSHpKVKEGANAAL 1238
                  79*******************************88777757999888776 PP

>> API5  Apoptosis inhibitory protein 5 (API5)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.0   0.0     0.034        35     303     394 ..     310     402 ..     267     417 .. 0.69
   2 ?   -2.4   0.1       1.4   1.5e+03      74     124 ..    1612    1660 ..    1604    1670 .. 0.70
   3 ?    6.5   0.0     0.003       3.2      70     130 ..    1685    1746 ..    1682    1757 .. 0.84
   4 ?   -3.3   0.0       2.8     3e+03      57      90 ..    1873    1906 ..    1870    1909 .. 0.86
   5 ?    1.1   0.0      0.13   1.3e+02      65      91 ..    2268    2294 ..    2264    2299 .. 0.87

  Alignments for each domain:
  == domain 1  score: 3.0 bits;  conditional E-value: 0.034
        API5 303 llesvvelLleymplpk....eeeaeeeeelqftyvEclLyafhqLakkspnflnsednseklkdfreRLqylarlvqatikklkealkekaleea 394
                 l+ ++++l+ + m++p+    ++ ++    +    +E lL a+ +++kk+p+  ++ +++++     +R +++ +l qa ++ +   l++++++ a
  KOO22979.1 310 LFRQLFQLIAHPMAAPRraadKALSQYVATMPCEAAERLLSALETVVKKAPELAAAAEDANE---ADSRERSVVQLLQANARAIAAHLSGDKGALA 402
                 567788888888888887664444555667888999****************9776555443...3444445555555555555555555444444 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 1.4
        API5   74 girkqAikdLpslckdtkeyvskiadiLaQlLitedaveldavhkallsll 124 
                  +   qA+ +L+   k ++  ++k+   L Q+L++ da+ +  v   l +l+
  KOO22979.1 1612 QAAAQAMGELV--SKLSERVLPKLLPTLQQCLTSADAARRRGVCLGLSELM 1660
                  33444444443..34455569***************999988877777765 PP

  == domain 3  score: 6.5 bits;  conditional E-value: 0.003
        API5   70 dddlgirkqAikdLpslckdt.keyvskiadiLaQlLitedaveldavhkallsllkldaka 130 
                  d+d ++r +A ++  +l +   ++++  i+ +L QlL ++da+ + + ++ l +++ + ++a
  KOO22979.1 1685 DEDSSVREAAARSFSQLQRILgQQAIYEIVPALLQLLRSDDALLVAKGQNGLREVMGQRPQA 1746
                  7899**************97625569****************99999999998888777666 PP

  == domain 4  score: -3.3 bits;  conditional E-value: 2.8
        API5   57 aekaidaqlDLiedddlgirkqAikdLpslckdt 90  
                  +++ i++++ ++  ++ +++++ i++L +l k+ 
  KOO22979.1 1873 HSNLIQSLIGMFHAEEPAVQRSGIRGLDNLIKSL 1906
                  56789999999****************9998875 PP

  == domain 5  score: 1.1 bits;  conditional E-value: 0.13
        API5   65 lDLiedddlgirkqAikdLpslckdtk 91  
                  ++L+ dd l++r++A+ +L ++ck  +
  KOO22979.1 2268 VELLADDVLEVRVSALHALKTMCKLRP 2294
                  578999*****************9665 PP

>> YukD  WXG100 protein secretion system (Wss), protein YukD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.5   0.3    0.0064       6.8      16      60 ..      46      91 ..      45      96 .. 0.84
   2 ?   -2.5   0.1       8.6     9e+03      18      49 ..    1002    1033 ..    1002    1042 .. 0.75
   3 ?   -2.8   0.0       9.9     1e+04      23      39 ..    1250    1266 ..    1249    1275 .. 0.74
   4 ?   -0.7   0.0       2.3   2.4e+03      21      51 ..    1708    1738 ..    1704    1744 .. 0.72
   5 ?    3.2   0.1      0.14   1.4e+02       8      51 ..    2208    2255 ..    2199    2261 .. 0.85

  Alignments for each domain:
  == domain 1  score: 7.5 bits;  conditional E-value: 0.0064
                EEETTSBTTHHHHHHHHHS-....--S---TT-EEEEGGGEEEETT CS
        YukD 16 aLPadvpvaellpalvrllg.epddeagrpggwsLarvggapLsgd 60
                aLPa+vp+ + +p+l+++l+    ++a++++  +La+++  +++g+
  KOO22979.1 46 ALPATVPIGASMPSLLEALQpLLLGAATPRADATLATTKPSAIPGS 91
                8******************996777788888899988876666665 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 8.6
                  ETTSBTTHHHHHHHHHS-...--S---TT-EE CS
        YukD   18 PadvpvaellpalvrllgepddeagrpggwsL 49  
                  P+d +va+++  l+++lg+p++   r+ + sL
  KOO22979.1 1002 PDDPKVAQVVTRLMAALGTPSEVVQRTISQSL 1033
                  78889************966665555555555 PP

  == domain 3  score: -2.8 bits;  conditional E-value: 9.9
                  TTHHHHHHHHHS-...- CS
        YukD   23 vaellpalvrllgepdd 39  
                  +a+l+p l+++l ep+ 
  KOO22979.1 1250 IAQLVPTLLAALSEPST 1266
                  799*********83333 PP

  == domain 4  score: -0.7 bits;  conditional E-value: 2.3
                  SBTTHHHHHHHHHS-...--S---TT-EEEE CS
        YukD   21 vpvaellpalvrllgepddeagrpggwsLar 51  
                  + + e++pal++ll ++d+  +++g+  L+ 
  KOO22979.1 1708 QAIYEIVPALLQLLRSDDALLVAKGQNGLRE 1738
                  56889*********96666666666655555 PP

  == domain 5  score: 3.2 bits;  conditional E-value: 0.14
                  -TTTEEEEEEETTSBTTHHHHHHHHHS-.......--S---TT-EEEE CS
        YukD    8 agnrrvDlaLPadvpvaellpalvrllg....epddeagrpggwsLar 51  
                  a++ ++Dl++Pa + + ++  ++ + ++    +++ e+++p++++La 
  KOO22979.1 2208 AKHEKIDLRMPASHALVRVAVNMAEPAAedvaDAATEGAEPEELALAS 2255
                  7899***************99999999888887888888888888876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (2387 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       817  (0.0455686); expected 358.6 (0.02)
Passed bias filter:                      527  (0.0293937); expected 358.6 (0.02)
Passed Vit filter:                        67  (0.00373696); expected 17.9 (0.001)
Passed Fwd filter:                        20  (0.00111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              17  [number of targets reported over threshold]
# CPU time: 1.39u 0.33s 00:00:01.72 Elapsed: 00:00:00.47
# Mc/sec: 15124.80
//
Query:       KOO22980.1  [L=1743]
Description: deleted in lung and esophageal cancer protein 1 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.1e-17   63.1   0.5      0.045   14.0   0.0   10.6 11  ASH           Abnormal spindle-like microcephaly-assoc'd, ASP
      7e-08   32.6   0.2    0.00045   20.3   0.0    5.4  6  PapD-like     Flagellar-associated PapD-like
    0.00015   21.6   0.1        6.9    6.6   0.1    6.3  8  Motile_Sperm  MSP (Major sperm protein) domain
    0.00099   19.3   0.1        8.6    6.7   0.0    5.5  6  TMEM131_like  Transmembrane protein 131-like
  ------ inclusion threshold ------
       0.12   12.6   0.2       0.46   10.8   0.2    2.0  1  DUF2742       Protein of unknown function (DUF2742)


Domain annotation for each model (and alignments):
>> ASH  Abnormal spindle-like microcephaly-assoc'd, ASPM-SPD-2-Hydin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.1   0.0    0.0071        25      13      84 ..     233     307 ..     228     316 .. 0.74
   2 !   14.0   0.0   1.3e-05     0.045      52      92 ..     386     426 ..     349     432 .. 0.87
   3 !    5.3   0.0    0.0064        23      15      46 ..     467     498 ..     459     513 .. 0.80
   4 !    4.7   0.0    0.0099        36      51      77 ..     547     573 ..     537     581 .. 0.89
   5 ?    4.1   0.0     0.015        54      55      93 ..     689     727 ..     681     730 .. 0.86
   6 !    6.4   0.0    0.0029        10      11      49 ..     748     786 ..     742     803 .. 0.85
   7 ?    3.5   0.1     0.022        80      18      73 ..     922     978 ..     910     988 .. 0.79
   8 ?    2.3   0.0     0.053   1.9e+02      71      93 ..    1318    1342 ..    1314    1346 .. 0.89
   9 ?    0.4   0.0      0.21   7.4e+02      49      79 ..    1387    1417 ..    1363    1425 .. 0.79
  10 ?   -3.8   0.0       4.5   1.6e+04      26      40 ..    1490    1504 ..    1489    1508 .. 0.68
  11 ?   -2.6   0.0       1.8   6.4e+03      26      43 ..    1609    1626 ..    1594    1632 .. 0.70

  Alignments for each domain:
  == domain 1  score: 5.1 bits;  conditional E-value: 0.0071
                 EEEE-----EEEEEEE-EEESS-SS--EEEEEEEE--XXXXXXXXXX.....XXXXXXXXXXXXXXXXXXXXXXXXX CS
         ASH  13 fvsFgdvkvGssaerlLtveNpseepaevkvskvpaaekgfsveete.....levqpgesvtltvtwtPteegavre 84 
                 +v F   + G   e  ++++N s  + +v    +p++++ fs + ++      +++pg   t++v ++P +     +
  KOO22980.1 233 KVHFVAYEAGGVYELPVQLHNVSTLSRRV--RVLPPSTRYFSTTLLSygaehGTIAPGMHATFRVRFAPDSLADYDD 307
                 67777777777888888888888855444..446667888888877777777*****************98766555 PP

  == domain 2  score: 14.0 bits;  conditional E-value: 1.3e-05
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
         ASH  52 gfsveetelevqpgesvtltvtwtPteegavrevLqflvnd 92 
                  f v++t l++qp + + +tvt++P + g+ +++L ++ ++
  KOO22980.1 386 PFVVSPTFLDLQPMDHFRVTVTYSPEAPGPSTATLLLVCDN 426
                 69999*************************99999877554 PP

  == domain 3  score: 5.3 bits;  conditional E-value: 0.0064
                 EE-----EEEEEEE-EEESS-SS--EEEEEEE CS
         ASH  15 sFgdvkvGssaerlLtveNpseepaevkvskv 46 
                 +Fgdv v ++++ +++v+N ++ p++ + ++ 
  KOO22980.1 467 DFGDVGVLTTQKSTVRVTNVTPLPLQFEWDRY 498
                 8********************99987766655 PP

  == domain 4  score: 4.7 bits;  conditional E-value: 0.0099
                 XXXXXXXXXXXXXXXXXXXXXXXXXXX CS
         ASH  51 kgfsveetelevqpgesvtltvtwtPt 77 
                   f++++ e  +q+ge+++++v ++P 
  KOO22980.1 547 LPFTITPPEGYLQAGETTSFEVHFSPM 573
                 579**********************95 PP

  == domain 5  score: 4.1 bits;  conditional E-value: 0.015
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
         ASH  55 veetelevqpgesvtltvtwtPteegavrevLqflvndv 93 
                 +++   +++++   ++t+t tP + g+ +  L+f+v+ +
  KOO22980.1 689 LDPPMGTLPAEAGSSVTITMTPRALGNLQRYLHFAVSPH 727
                 55666899**************************99865 PP

  == domain 6  score: 6.4 bits;  conditional E-value: 0.0029
                 -EEEEE-----EEEEEEE-EEESS-SS--EEEEEEEE-- CS
         ASH  11 kpfvsFgdvkvGssaerlLtveNpseepaevkvskvpaa 49 
                 + +++Fg  ++G +++ +L++eN s+ +a+  + ++p +
  KOO22980.1 748 TSKLDFGLCPLGDTKSLTLEFENLSAREAKWMLVPAPLP 786
                 5789*********************99988877777765 PP

  == domain 7  score: 3.5 bits;  conditional E-value: 0.022
                 ----EEEEEEE-EEESS-SS-.-EEEEEEEE--XXXXXXXXXXXXXXXXXXXXXXXX CS
         ASH  18 dvkvGssaerlLtveNpseep.aevkvskvpaaekgfsveetelevqpgesvtltvt 73 
                 ++ v     r+Lt++N +  + +   v +v++ +  +++e+++ +++p  ++t+tvt
  KOO22980.1 922 TTYVRVPVVRTLTLTNLTRIAtSFECVHTVSKGSADVQMEPASGVLAPAAKLTITVT 978
                 555555666888888888877444457788899999********************9 PP

  == domain 8  score: 2.3 bits;  conditional E-value: 0.053
                  XXXXXXXXXXX..XXXXXXXXXXXX CS
         ASH   71 tvtwtPteega..vrevLqflvndv 93  
                  t++w+P+++ga  v++++++l+n+ 
  KOO22980.1 1318 TLSWAPVAQGAapVKKTIRVLNNGP 1342
                  689******9888**********86 PP

  == domain 9  score: 0.4 bits;  conditional E-value: 0.21
                  -XXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
         ASH   49 aekgfsveetelevqpgesvtltvtwtPtee 79  
                  a+++f +++++ ++++g++  ++v++  ++e
  KOO22980.1 1387 ASRAFRITPATDVLPAGGERRFEVVFDASAE 1417
                  6899*********************987666 PP

  == domain 10  score: -3.8 bits;  conditional E-value: 4.5
                  EEE-EEESS-SS--E CS
         ASH   26 erlLtveNpseepae 40  
                  +r+Lt++N+s++++e
  KOO22980.1 1490 TRTLTLTNDSKTTLE 1504
                  577888888877665 PP

  == domain 11  score: -2.6 bits;  conditional E-value: 1.8
                  EEE-EEESS-SS--EEEE CS
         ASH   26 erlLtveNpseepaevkv 43  
                   r++t++Np+e+  e ++
  KOO22980.1 1609 VREVTIHNPTEAVCEWTL 1626
                  588999999997766555 PP

>> PapD-like  Flagellar-associated PapD-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.3   0.0   1.3e-07   0.00045       5      98 ..     228     323 ..     225     326 .. 0.83
   2 ?   -2.1   0.0       1.2   4.4e+03      12      36 ..     467     491 ..     464     495 .. 0.85
   3 ?    1.6   0.0     0.087   3.1e+02       2      39 ..     742     779 ..     741     788 .. 0.88
   4 ?    0.2   0.1      0.24   8.7e+02       7      80 ..     914     987 ..     910    1006 .. 0.70
   5 ?    1.2   0.0      0.11   4.1e+02      23      44 ..    1075    1096 ..    1057    1106 .. 0.72
   6 ?   -2.0   0.0       1.1     4e+03      21      44 ..    1488    1511 ..    1478    1518 .. 0.84

  Alignments for each domain:
  == domain 1  score: 20.3 bits;  conditional E-value: 1.3e-07
   PapD-like   5 evsPakveFGkvlpgnryvltvellnvstvpcRyrvrlpav...vkkllsveYkrqFvaPGltvklkvelsgaqplGemdselsvvheggivevevr 98 
                  ++P+kv+F   + g  y l+v+l nvst   R rv  p++      lls   +++ +aPG+    +v       l   d  +++ +e+++ ++ ++
  KOO22980.1 228 HANPEKVHFVAYEAGGVYELPVQLHNVSTLSRRVRVLPPSTryfSTTLLSYGAEHGTIAPGMHATFRVRFA-PDSLADYDDFVVIQTEKESYPLPLH 323
                 578*********************************87763221234556666899************999.8889999999999999998877665 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 1.2
   PapD-like  12 eFGkvlpgnryvltvellnvstvpc 36 
                 +FG v        tv+++nv   p 
  KOO22980.1 467 DFGDVGVLTTQKSTVRVTNVTPLPL 491
                 799999999999*******987765 PP

  == domain 3  score: 1.6 bits;  conditional E-value: 0.087
   PapD-like   2 PtlevsPakveFGkvlpgnryvltvellnvstvpcRyr 39 
                 P++ ++ +k++FG    g    lt+e+ n s   +++ 
  KOO22980.1 742 PHVHIKTSKLDFGLCPLGDTKSLTLEFENLSAREAKWM 779
                 8889999************************9888775 PP

  == domain 4  score: 0.2 bits;  conditional E-value: 0.24
   PapD-like   7 sPakveFGkvlpgnryvltvellnvstvpcRyrv.rlpavvkkllsveYkrqFvaPGltvklkvelsgaqplGem 80 
                 sP+    G+      +v+t++l+n     + +      ++ +  +++e   + +aP     + v +  ++  G+m
  KOO22980.1 914 SPSAHPLGTTYVRVPVVRTLTLTNLTRIATSFECvHTVSKGSADVQMEPASGVLAPAAKLTITVTII-SETDGPM 987
                 666777777777888999******9888888874133333445566677778899988888888888.4444555 PP

  == domain 5  score: 1.2 bits;  conditional E-value: 0.11
   PapD-like   23 vltvellnvstvpcRyrvrlpa 44  
                   l + ++n+s v +Ry +r   
  KOO22980.1 1075 TLVLLITNMSAVRTRYTLRAER 1096
                  4456689**********99765 PP

  == domain 6  score: -2.0 bits;  conditional E-value: 1.1
   PapD-like   21 ryvltvellnvstvpcRyrvrlpa 44  
                  +y +t++l+n s +   + + +p+
  KOO22980.1 1488 AYTRTLTLTNDSKTTLEFTLAIPP 1511
                  799*********999888888776 PP

>> Motile_Sperm  MSP (Major sperm protein) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.4   0.0      0.16   5.6e+02      52      86 ..     282     312 ..     273     318 .. 0.79
   2 ?   -2.8   0.0       1.6   5.7e+03      46      70 ..     387     411 ..     386     419 .. 0.84
   3 ?    2.8   0.0     0.028     1e+02      46      69 ..     549     572 ..     547     578 .. 0.90
   4 ?   -4.2   0.0       4.3   1.5e+04      50      69 ..     691     710 ..     689     712 .. 0.83
   5 ?   -1.0   0.0      0.44   1.6e+03      51      69 ..     859     877 ..     855     884 .. 0.88
   6 !    6.6   0.1    0.0019       6.9      23      71 ..     932     983 ..     922     989 .. 0.69
   7 ?   -0.3   0.0      0.25   9.1e+02      44      71 ..    1389    1416 ..    1387    1424 .. 0.88
   8 ?   -0.7   0.0      0.34   1.2e+03      14      36 ..    1486    1505 ..    1474    1507 .. 0.72

  Alignments for each domain:
  == domain 1  score: 0.4 bits;  conditional E-value: 0.16
                   EEEETTTCEEEEEEEEESSSSSTTSTCCEEEEEEE CS
  Motile_Sperm  52 vGiikpgesveitvtlkpldeepsekkkdkfviqy 86 
                    G+i+pg +++++v + p    +     d fv++ 
    KOO22980.1 282 HGTIAPGMHATFRVRFAPDSLAD----YDDFVVIQ 312
                   699**************944444....66666654 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 1.6
                   EEEESSEEEETTTCEEEEEEEEESS CS
  Motile_Sperm  46 yrvrPnvGiikpgesveitvtlkpl 70 
                   ++v P++  ++p+++  +tvt  p 
    KOO22980.1 387 FVVSPTFLDLQPMDHFRVTVTYSPE 411
                   789999999**********999884 PP

  == domain 3  score: 2.8 bits;  conditional E-value: 0.028
                   EEEESSEEEETTTCEEEEEEEEES CS
  Motile_Sperm  46 yrvrPnvGiikpgesveitvtlkp 69 
                   +++ P+ G++++ge++ ++v + p
    KOO22980.1 549 FTITPPEGYLQAGETTSFEVHFSP 572
                   7899***************98877 PP

  == domain 4  score: -4.2 bits;  conditional E-value: 4.3
                   SSEEEETTTCEEEEEEEEES CS
  Motile_Sperm  50 PnvGiikpgesveitvtlkp 69 
                   P++G++ ++    +t+t+ p
    KOO22980.1 691 PPMGTLPAEAGSSVTITMTP 710
                   89999999988999998877 PP

  == domain 5  score: -1.0 bits;  conditional E-value: 0.44
                   SEEEETTTCEEEEEEEEES CS
  Motile_Sperm  51 nvGiikpgesveitvtlkp 69 
                   ++G+i + e+ ++tvt+ +
    KOO22980.1 859 CCGTIGAHETKQVTVTVDA 877
                   79*************9977 PP

  == domain 6  score: 6.6 bits;  conditional E-value: 0.0019
                   EEEEEE-SSSSEEEE.EEES..-TTTEEEESSEEEETTTCEEEEEEEEESSS CS
  Motile_Sperm  23 klklkNtskkrvaFk.vktt..apkkyrvrPnvGiikpgesveitvtlkpld 71 
                   +l+l+N +  ++ F  v t       + ++P++G+++p  +++itvt  + +
    KOO22980.1 932 TLTLTNLTRIATSFEcVHTVskGSADVQMEPASGVLAPAAKLTITVTIISET 983
                   56666666666666522222002346789*****************998744 PP

  == domain 7  score: -0.3 bits;  conditional E-value: 0.25
                    TTEEEESSEEEETTTCEEEEEEEEESSS CS
  Motile_Sperm   44 kkyrvrPnvGiikpgesveitvtlkpld 71  
                    + +r+ P+++++ +g +  ++v++ ++ 
    KOO22980.1 1389 RAFRITPATDVLPAGGERRFEVVFDASA 1416
                    579********************99865 PP

  == domain 8  score: -0.7 bits;  conditional E-value: 0.34
                    SSTSSHEEEEEEEEE-SSSSEEE CS
  Motile_Sperm   14 aelnkqgtsklklkNtskkrvaF 36  
                    ++     t +l+l+N sk+++ F
    KOO22980.1 1486 DPA---YTRTLTLTNDSKTTLEF 1505
                    333...6899********99877 PP

>> TMEM131_like  Transmembrane protein 131-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.7   0.0    0.0024       8.6       4      84 .]     230     313 ..     227     313 .. 0.85
   2 ?    1.2   0.0      0.12   4.5e+02      55      82 ..     395     422 ..     388     424 .. 0.90
   3 ?   -1.9   0.0       1.1   4.1e+03      60      82 ..     700     722 ..     695     723 .. 0.80
   4 ?    1.7   0.0     0.089   3.2e+02       1      32 [.     744     775 ..     744     780 .. 0.89
   5 ?    1.0   0.0      0.15   5.2e+02       3      75 ..     913     986 ..     911     989 .. 0.73
   6 ?   -2.1   0.0       1.3   4.7e+03      54      78 ..    1398    1423 ..    1389    1426 .. 0.74

  Alignments for each domain:
  == domain 1  score: 6.7 bits;  conditional E-value: 0.0024
  TMEM131_like   4 sPpeLdFgesslgkaasrtvtvvNkhk.keklkllsvtsdsie..fqssffeevvlpPggntslkvvFLPrelGaseaslkllT 84 
                   +P +  F+  + g + +  v+++N ++ ++ +++l +++      + s+  e+  ++Pg ++++ v F P +l   +  ++++T
    KOO22980.1 230 NPEKVHFVAYEAGGVYELPVQLHNVSTlSRRVRVLPPSTRYFSttLLSYGAEHGTIAPGMHATFRVRFAPDSLADYDDFVVIQT 313
                   6888999999999999999999998774788999999998655448899999********************998888888877 PP

  == domain 2  score: 1.2 bits;  conditional E-value: 0.12
  TMEM131_like  55 vlpPggntslkvvFLPrelGaseaslkl 82 
                    l+P+++ +++v + P++ G+s a+l l
    KOO22980.1 395 DLQPMDHFRVTVTYSPEAPGPSTATLLL 422
                   699*********************9986 PP

  == domain 3  score: -1.9 bits;  conditional E-value: 1.1
  TMEM131_like  60 gntslkvvFLPrelGaseaslkl 82 
                      s+++   Pr+lG+ +  l++
    KOO22980.1 700 AGSSVTITMTPRALGNLQRYLHF 722
                   5678999999*****99887775 PP

  == domain 4  score: 1.7 bits;  conditional E-value: 0.089
  TMEM131_like   1 leisPpeLdFgesslgkaasrtvtvvNkhkke 32 
                   ++i+ ++LdFg  +lg+ +s t+++ N +++e
    KOO22980.1 744 VHIKTSKLDFGLCPLGDTKSLTLEFENLSARE 775
                   5788899********************88776 PP

  == domain 5  score: 1.0 bits;  conditional E-value: 0.15
  TMEM131_like   3 isPpeLdFgesslgkaasrtvtvvNkhkke.klkllsvtsdsiefqssffeevvlpPggntslkvvFLPrelGa 75 
                   +sP++   g++ + ++  rt+t+ N  + + +++    +s+  +  ++   + vl+P  + +++v  ++++ G+
    KOO22980.1 913 LSPSAHPLGTTYVRVPVVRTLTLTNLTRIAtSFECVHTVSKGSADVQMEPASGVLAPAAKLTITVTIISETDGP 986
                   66777777888899999999999998764415555555555444455678899999999999999999888776 PP

  == domain 6  score: -2.1 bits;  conditional E-value: 1.3
  TMEM131_like   54 vvlpPggntslkvvF.LPrelGasea 78  
                     vlp gg+++++vvF  + e+G+ ea
    KOO22980.1 1398 DVLPAGGERRFEVVFdASAEMGSGEA 1423
                    5889999********33455666555 PP

>> DUF2742  Protein of unknown function (DUF2742)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.2   0.00013      0.46       3      45 ..    1317    1362 ..    1315    1371 .. 0.79

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00013
     DUF2742    3 ravsWwevhef...vaplldkaeelPlaGtpaWselddtdPvkwaa 45  
                  + +sW +v +    v+ ++  +++ Pl  t+aW+ l+  dP k +a
  KOO22980.1 1317 QTLSWAPVAQGaapVKKTIRVLNNGPLPATLAWEVLQAPDPEKPLA 1362
                  5679999987611155578889********************9655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1743 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       322  (0.0179597); expected 358.6 (0.02)
Passed bias filter:                      240  (0.0133861); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.86u 0.27s 00:00:01.12 Elapsed: 00:00:00.45
# Mc/sec: 11534.84
//
Query:       KOO22981.1  [L=529]
Description: hypothetical protein Ctob_006204 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.3e-15   57.6   4.5    1.7e-11   44.4   1.0    2.8  2  Agenet        Agenet domain
    1.8e-05   24.5   1.0    6.4e-05   22.8   0.1    2.5  2  Chromo        Chromo (CHRromatin Organisation MOdifier) domai
  ------ inclusion threshold ------
      0.026   14.8   1.1       0.13   12.6   0.1    2.5  2  Lzipper-MIP1  Leucine-zipper of ternary complex factor MIP1
      0.073   11.6   0.9       0.13   10.8   0.9    1.3  1  Herpes_UL25   Herpesvirus UL25 family


Domain annotation for each model (and alignments):
>> Agenet  Agenet domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.4   1.0   3.7e-15   1.7e-11       1      61 []     127     186 ..     127     186 .. 0.87
   2 !   13.8   0.1   1.4e-05     0.062       1      58 [.     197     243 ..     197     246 .. 0.65

  Alignments for each domain:
  == domain 1  score: 44.4 bits;  conditional E-value: 3.7e-15
      Agenet   1 GdkVEvlsdeegfrGaWfrAtilkvkegdkylVeYddlddddgskpleEwvdasdiRPlpp 61 
                 G++VEv++ eegf+ +W +At++k++ ++k+ VeY     +++++++ E+v+++++R +p+
  KOO22981.1 127 GSEVEVKNVEEGFENSWAEATVTKTEPDGKVAVEYSG-FVSEDGGAVSETVERKRLRLVPE 186
                 89***********************4446********.5555555668*********9985 PP

  == domain 2  score: 13.8 bits;  conditional E-value: 1.4e-05
      Agenet   1 GdkVEvlsdeegfrGaWfrAtilkvkegdkylVeYddlddddgskpleEwvdasdiRP 58 
                 G+ +Ev  d      +W++A ++++  g+k++ + +    +d+ k +      +++RP
  KOO22981.1 197 GEIIEVNED-----DCWWEARVIEI-TGKKAKLQLRV---SDEFKMM--SLGTKKLRP 243
                 677888866.....45*********.77877777766...2233333..445555555 PP

>> Chromo  Chromo (CHRromatin Organisation MOdifier) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.8   0.1   1.4e-08   6.4e-05       2      52 ..      67     111 ..      66     113 .. 0.91
   2 ?   -1.7   0.1      0.63   2.8e+03      28      38 ..     203     213 ..     201     224 .. 0.70

  Alignments for each domain:
  == domain 1  score: 22.8 bits;  conditional E-value: 1.4e-08
                 EEEEEEEEEEETTEECEEEEEEETTSTGGGTEEEEGGGCSSHSHHHHHHHH CS
      Chromo   2 eVerIidhrtdkdgleleYlVKWkglpysentWEpeenlekcfqelideFk 52 
                 eV++I++++ + +g+ l Y + W +      tWEpe+n+ ++  +l+d+F+
  KOO22981.1  67 EVDKILAVKSNSKGG-LLYQILWVD---GTKTWEPEDNVMDD--DLVDAFE 111
                 8********999999.9******86...678*********99..99****8 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 0.63
                 TGGGTEEEEGG CS
      Chromo  28 pysentWEpee 38 
                 +++++ WE + 
  KOO22981.1 203 NEDDCWWEARV 213
                 6899****865 PP

>> Lzipper-MIP1  Leucine-zipper of ternary complex factor MIP1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.1      0.44     2e+03      15      37 ..     222     245 ..     219     266 .. 0.64
   2 ?   12.6   0.1   2.9e-05      0.13      26      71 ..     307     351 ..     303     355 .. 0.88

  Alignments for each domain:
  == domain 1  score: -0.8 bits;  conditional E-value: 0.44
  Lzipper-MIP1  15 qLqerLqeeeklrraLekal.sss 37 
                   +Lq r ++e+k+ ++  k l ++s
    KOO22981.1 222 KLQLRVSDEFKMMSLGTKKLrPCS 245
                   8999******99888888883332 PP

  == domain 2  score: 12.6 bits;  conditional E-value: 2.9e-05
  Lzipper-MIP1  26 lrraLekalssssdgsllslstllpkkakellkeiallEeevvkLE 71 
                    rr Le++  ++++ +++ l++l p+++ke l+e+  +E+e  +L 
    KOO22981.1 307 ARRDLERTQ-RRQSLATSGLDALGPDETKEALRELDAVEAELQRLA 351
                   689999999.777788999**********************99986 PP

>> Herpes_UL25  Herpesvirus UL25 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.9   2.8e-05      0.13      21     103 ..     288     363 ..     274     392 .. 0.77

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 2.8e-05
                  ...XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.X CS
  Herpes_UL25  21 slrepereaellreealeasreevevlevkkralraeLdnlaqkavalaeeierrlkevEellekiaeleaaaaaeeaaaar.p 103
                  s+ e e + ++++++ ++a+r+++e  ++++ +++  Ld l  ++ +   e+ r+l++vE+ l+++     a+ a +++a+  +
   KOO22981.1 288 SRTEQEARHQRMISPNAAAARRDLERTQRRQSLATSGLDALGPDETK---EALRELDAVEAELQRL-----AHDARRGPAPTvA 363
                  5667778889999999999***********************99875...6679**********44.....5555555555442 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (529 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       960  (0.0535445); expected 358.6 (0.02)
Passed bias filter:                      469  (0.0261587); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.59u 0.24s 00:00:00.83 Elapsed: 00:00:00.44
# Mc/sec: 3635.52
//
Query:       KOO22982.1  [L=806]
Description: dynamin central region family protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.3e-21   77.4   0.0    2.4e-21   76.5   0.0    1.5  1  Dynamin_N      Dynamin family
    5.3e-13   48.9   0.0    1.5e-12   47.5   0.0    1.8  1  U-box          U-box domain
    6.5e-06   25.6   0.0    8.3e-05   21.9   0.0    2.3  2  Dynamin_M      Dynamin central region
    1.5e-05   25.0   0.1    0.00012   22.1   0.1    2.4  1  MMR_HSR1       50S ribosome-binding GTPase
     0.0001   22.0   0.0    0.00023   20.9   0.0    1.5  1  zf-Nse         Zinc-finger of the MIZ type in Nse subunit
  ------ inclusion threshold ------
      0.021   14.9   0.0      0.048   13.7   0.0    1.6  1  zf-RING_UBOX   RING-type zinc-finger
      0.038   14.3   0.1       0.16   12.3   0.1    2.1  1  FdsD           NADH-dependant formate dehydrogenase delta sub
      0.042   14.0   0.3       0.13   12.4   0.3    1.8  1  CO_deh_flav_C  CO dehydrogenase flavoprotein C-terminal domai
      0.066   13.4   0.1       0.18   12.0   0.0    1.7  2  Roc            Ras of Complex, Roc, domain of DAPkinase
      0.079   13.2   0.3        0.3   11.3   0.3    2.2  1  AAA_28         AAA domain


Domain annotation for each model (and alignments):
>> Dynamin_N  Dynamin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   76.5   0.0   1.3e-24   2.4e-21       1     166 [.      97     286 ..      97     288 .. 0.84

  Alignments for each domain:
  == domain 1  score: 76.5 bits;  conditional E-value: 1.3e-24
                 EEEEEBTTTTHHHHHHHHHTS--S---SSS---S-EEEEE..............CCT---CCS...SSEEEET-EB--CHHHHHHHHHHHHHHHTSSSS CS
   Dynamin_N   1 iavvGsqSsGKSSvlnaLlgedilprgpnptTrrplelql..............geeeeaseravkeelkekekkledfsevreeieketekiagankg 85 
                 ++vvGs S GKSS+l+++ g +++prg+n+tTr  + l+l              +e  ++s ++v  ++ ++ + + ++++ r  +e+e++k++    g
  KOO22982.1  97 VIVVGSESVGKSSLLEKIAGMAFFPRGENVTTRLGFRLRLhhctpkemderkkgREAVSVSGKEVLMRFDDEPEYMASVEQARARVEAENAKVQALRVG 195
                 79**************************************98998877766554333334455666666777999999999999999999999999999 PP

                 --SS-EEEEEEETTS-SEEEEE---B-SSSGTTS.........HHHHHHH.STTEEEEEEEETTS-CCC-.CHHHHHHHHSTTBTTEEEEEE CS
   Dynamin_N  86 iskkvillkilsllvkgltlvDlPGldsvnkrdq.........elvkeyi.kkadiilavtsanhdlsns.ealflarevdpkgkrtivvlt 166
                 + ++ i+l+ +s + ++ltl+DlPG+++    +          ++v++ i ++ +iilav++a   +  + e  +l +e  + ++rt+ vlt
  KOO22982.1 196 VVDREIILNLYSNDFPELTLLDLPGIIRARGPNDpedihktceKIVRSKIrNPDAIILAVLNAREGIRGAaEGIRLVQEE-KAERRTLAVLT 286
                 9999************************777777799***************************9888654666666554.34556777776 PP

>> U-box  U-box domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.5   0.0   8.5e-16   1.5e-12       6      70 ..     726     797 ..     723     800 .. 0.93

  Alignments for each domain:
  == domain 1  score: 47.5 bits;  conditional E-value: 8.5e-16
                 B-TTT-SB-SSEEEETTTEEEEHHHHHHHHTT........SSB-TTT-SB--GGGSEE-HHHHHHHHHHHHH CS
       U-box   6 ldpitlelmkdPvilpsgvvvdrstiekhlls.......rdktdPftrepltqdqlipnlelKekIdeflee 70 
                 l+pi++elm++Pv +++g+v++r++ie+++++       +   +P t epl++ +lip   ++ +I e+le+
  KOO22982.1 726 LCPISRELMREPVTASDGHVYERASIERWIKEmtkgnktVPVRSPKTGEPLESIKLIPAHMVRSQIIEWLEK 797
                 8*******************************99988766667999************************96 PP

>> Dynamin_M  Dynamin central region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.9   0.0   4.6e-08   8.3e-05      56     118 ..     449     514 ..     443     522 .. 0.86
   2 ?    0.5   0.0      0.16   2.9e+02      82     114 ..     695     727 ..     688     763 .. 0.73

  Alignments for each domain:
  == domain 1  score: 21.9 bits;  conditional E-value: 4.6e-08
   Dynamin_M  56 kaGtpyLakkLnqiLvehIrksl.Pelkkkineklqklekeleelgeskpsde..ektklllqlit 118
                 + G ++L ++L+q+L+ehI++   P+++k i +k ++++++++++g + p+++   + ++ +ql++
  KOO22982.1 449 YLGSRALSERLSQLLTEHISNVWsPKMRKMIAKKQEDVQRRISACGVEPPTEDatARAAFATQLVQ 514
                 7899*****************865**********************66666655777777777776 PP

  == domain 2  score: 0.5 bits;  conditional E-value: 0.16
   Dynamin_M  82 kkkineklqklekeleelgeskpsdeektklll 114
                 +k++++ l++++kel ++g++ p  e +   l 
  KOO22982.1 695 NKRLHKALEEVSKELVRYGDGPPRPEPNADHLC 727
                 68999**************88776555555555 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.1   0.1   6.7e-08   0.00012       1     104 [.      96     277 ..      96     306 .. 0.73

  Alignments for each domain:
  == domain 1  score: 22.1 bits;  conditional E-value: 6.7e-08
                 EEEEEESTTSSHHHHHHHHHTSTEEESSSTTSSSSEEEEEEE...ETTEE................................................. CS
    MMR_HSR1   1 evaivGrpNvGKStLinaltgekaivsdkpgtTrdinegrvk...lkgke................................................. 47 
                 ev++vG   vGKS+L+ ++ g +     ++ tTr   + r++       +                                                 
  KOO22982.1  96 EVIVVGSESVGKSSLLEKIAGMAFFPRGENVTTRLGFRLRLHhctP---Kemderkkgreavsvsgkevlmrfddepeymasveqararveaenakvqa 191
                 699******************9888888888888877777763331...13445567788999999999999999999********************* PP

                 .....................EEEEECGGCSS..HHHHHHHHHHHHHH....HHC.TSE.EEEEEETTTTCSHHHHHHHHHHHHH.T CS
    MMR_HSR1  48 .....................ielvDtpGlie..gaseekglgkafla....lee.adl.illvvdaseeklkpldeeleellee.a 104
                                      ++l+D+pG+i   g ++ +++ k+ ++    +++  d+ il v++a+ e+++   e +  ++ee a
  KOO22982.1 192 lrvgvvdreiilnlysndfpeLTLLDLPGIIRarGPNDPEDIHKTCEKivrsKIRnPDAiILAVLNAR-EGIRGAAEGIRLVQEEkA 277
                 *****************************974343333333333333311113332454266677766.556665555555544333 PP

>> zf-Nse  Zinc-finger of the MIZ type in Nse subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.9   0.0   1.3e-07   0.00023      11      47 ..     724     759 ..     720     769 .. 0.83

  Alignments for each domain:
  == domain 1  score: 20.9 bits;  conditional E-value: 1.3e-07
                 XSB-TTTSSB-SSEEEESSS--EEEHHHHHHHCTTTS CS
      zf-Nse  11 slkCPltlqpfeePvtskkCpHvFEreaIlelikrkk 47 
                 +  CP++++ ++ePvt     Hv+Er +I++ ik+ +
  KOO22982.1 724 DHLCPISRELMREPVTASD-GHVYERASIERWIKEMT 759
                 667*************987.8************6543 PP

>> zf-RING_UBOX  RING-type zinc-finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.0   2.7e-05     0.048       1      28 [.     727     758 ..     727     768 .. 0.79

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 2.7e-05
  zf-RING_UBOX   1 CpIClelftdPlvl.pCGHtFCreCl..w..el 28 
                   CpI++el+ +P v+ + GH++ r  +  w  e+
    KOO22982.1 727 CPISRELMREP-VTaSDGHVYERASIerWikEM 758
                   ***********.8779**********7766322 PP

>> FdsD  NADH-dependant formate dehydrogenase delta subunit FdsD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.1   8.9e-05      0.16      27      45 ..     464     482 ..     456     493 .. 0.82

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 8.9e-05
        FdsD  27 adHikkfWeprMRraLlay 45 
                  +Hi + W+p+MR+ +++ 
  KOO22982.1 464 TEHISNVWSPKMRKMIAKK 482
                 69************99865 PP

>> CO_deh_flav_C  CO dehydrogenase flavoprotein C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.3   7.5e-05      0.13      37      83 ..     342     388 ..     336     397 .. 0.90

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 7.5e-05
                    EESSSSS-EE-HHHHHHHTTSBSSHHHHHHHHHHHHTTCHHHTCTTC CS
  CO_deh_flav_C  37 fggvaptpvraekaeaaLiGkplseelleeaakaleeelspasdpra 83 
                    + ++++tp+  ++ae +L G ++se++l++a++ + + ++ a++p a
     KOO22982.1 342 LAAISATPIDMPAAELLLRGDRVSEAVLAAALTDVDKRATTAAHPAA 388
                    67899*******************************99999888765 PP

>> Roc  Ras of Complex, Roc, domain of DAPkinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0    0.0001      0.18       2      32 ..      97     128 ..      96     157 .. 0.67
   2 ?   -3.4   0.0         6   1.1e+04      93     109 ..     749     765 ..     744     767 .. 0.75

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 0.0001
                 EEEESSTTSSHHHHHHCHCT-CCC-E.EETTT CS
         Roc   2 vvlvGdsgvGKtsllkrfvedkfsek.eksti 32 
                 v++vG ++vGK+sll+++    f ++ e+ t+
  KOO22982.1  97 VIVVGSESVGKSSLLEKIAGMAFFPRgENVTT 128
                 89****************99888654133343 PP

  == domain 2  score: -3.4 bits;  conditional E-value: 6
                 HCHHHHHHHHHHHCSSS CS
         Roc  93 enlkeWlkelkkvagks 109
                 +++++W+ke++k +++ 
  KOO22982.1 749 ASIERWIKEMTKGNKTV 765
                 57899***999877665 PP

>> AAA_28  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.3   0.00016       0.3       2      83 ..      97     202 ..      96     308 .. 0.79

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00016
      AAA_28   2 ivitGgestGKTtlleaLaar.....gypvvpEaareileeklakgedalpwve.................dllafaervleeqleeeaaa...aankv 75 
                 ++++G es GK++lle++a +     g +v ++ + ++  ++   +e + ++ +                 d  ++ + v++++++ ea++   +a +v
  KOO22982.1  97 VIVVGSESVGKSSLLEKIAGMaffprGENVTTRLGFRLRLHHCTPKEMDERK-KgreavsvsgkevlmrfdDEPEYMASVEQARARVEAENakvQALRV 194
                 799****************554444477777777776666666555533333.1335666677777777777777777788888888777666777778 PP

      AAA_28  76 lfcDrgll 83 
                  ++Dr+++
  KOO22982.1 195 GVVDREII 202
                 88888776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (806 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       737  (0.0411066); expected 358.6 (0.02)
Passed bias filter:                      627  (0.0349713); expected 358.6 (0.02)
Passed Vit filter:                        65  (0.00362541); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.71u 0.30s 00:00:01.01 Elapsed: 00:00:00.45
# Mc/sec: 5404.14
//
Query:       KOO22983.1  [L=95]
Description: hypothetical protein Ctob_006203 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
  ------ inclusion threshold ------
      0.078   13.4   0.0       0.16   12.5   0.0    1.5  2  Phage_lysozyme  Phage lysozyme


Domain annotation for each model (and alignments):
>> Phage_lysozyme  Phage lysozyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   8.7e-06      0.16      29      67 ..      25      63 ..      20      76 .. 0.89
   2 ?   -0.8   0.0      0.11     2e+03      85     100 ..      63      78 ..      62      80 .. 0.81

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 8.7e-06
                    HHHHHHHHHHHHHHTTSHHSSHHHHHHHHHHHHHHHHHH CS
  Phage_lysozyme 29 ekdlktaerkikqyikvkdfepnqqdalvslafnvGkgG 67
                    e+d ++a + i+qy    ++ p+++ al+ +a+  G++ 
      KOO22983.1 25 EFDADEASARIAQYGASREVKPTEFQALLAQAISSGCQT 63
                    68999********************************73 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 0.11
                     HHHHHGGGSSEETCCC CS
  Phage_lysozyme  85 kacsairkslkaGkel 100
                      ++++++++   G ++
      KOO22983.1  63 TMLDELWEWCDTGEND 78 
                     58999****8888775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (95 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       403  (0.0224776); expected 358.6 (0.02)
Passed bias filter:                      380  (0.0211947); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.24s 00:00:00.61 Elapsed: 00:00:00.40
# Mc/sec: 708.89
//
Query:       KOO22984.1  [L=431]
Description: lupus brain antigen 1-like protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    9.5e-10   38.2   0.1      0.002   17.9   0.1    2.7  2  UvrD_C_2         UvrD-like helicase C-terminal domain
    8.3e-09   35.3   0.0    7.1e-08   32.2   0.0    2.0  2  UvrD_C           UvrD-like helicase C-terminal domain
    0.00029   21.2   0.1    0.00073   19.9   0.0    1.7  2  AAA_19           AAA domain
    0.00037   20.1   0.0    0.00065   19.3   0.0    1.3  1  UvrD-helicase    UvrD/REP helicase N-terminal domain
  ------ inclusion threshold ------
      0.018   15.5   1.0       0.05   14.2   1.0    1.7  1  Dermcidin        Dermcidin, antibiotic peptide
       0.15   11.7   0.2         16    5.1   0.1    2.8  3  Viral_helicase1  Viral (Superfamily 1) RNA helicase


Domain annotation for each model (and alignments):
>> UvrD_C_2  UvrD-like helicase C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.4   0.0   9.4e-07    0.0028       3      35 ..     286     318 ..     284     320 .. 0.83
   2 !   17.9   0.1   6.7e-07     0.002      33      51 ..     386     406 ..     374     407 .. 0.78

  Alignments for each domain:
  == domain 1  score: 17.4 bits;  conditional E-value: 9.4e-07
    UvrD_C_2   3 yaltihkaQGsefpaVivfdpdlaaarmgelrr 35 
                   lti  a+G+ef+ V++f+  ++++  ++ +r
  KOO22984.1 286 LTLTIFEAKGLEFDDVFLFNFFADSPADDRTWR 318
                 579***************998888887666555 PP

  == domain 2  score: 17.9 bits;  conditional E-value: 6.7e-07
    UvrD_C_2  33 l..rrrlLYtavTRAreklil 51 
                 l    ++LYta+TRAr k+++
  KOO22984.1 386 LneELKMLYTAMTRARVKVVI 406
                 344789************998 PP

>> UvrD_C  UvrD-like helicase C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.9   0.0     0.078   2.3e+02       3      24 ..     220     241 ..     218     276 .. 0.74
   2 !   32.2   0.0   2.4e-11   7.1e-08     285     344 ..     283     406 ..     243     410 .. 0.86

  Alignments for each domain:
  == domain 1  score: 0.9 bits;  conditional E-value: 0.078
                 xxxxxxxxxxxxxxxxxxxxxx RF
      UvrD_C   3 LekNyRStksLlkaankfleni 24 
                 L  NyR  + +l+aa+++++  
  KOO22984.1 220 LSVNYRTHNGILGAASQIVSLL 241
                 899************9998644 PP

  == domain 2  score: 32.2 bits;  conditional E-value: 2.4e-11
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.................................................................xxxx RF
      UvrD_C 285 ekipiiTiHqAKGlEFdvVflagleegtfP.................................................................syrs 318
                 ++   +Ti +AKGlEFd Vfl++ + +  P                                                                 s+  
  KOO22984.1 283 QSALTLTIFEAKGLEFDDVFLFNFFAD-SPaddrtwrvitsswarsrdesptdtaaarererasgrercserasaadvadeaegaelsiqaprpeSFDR 380
                 566678*****************7776.588******************************************************99999999987777 PP

                 xxxxxxxxxxxxxxxxxxxxxxxxxx RF
      UvrD_C 319 kkekrleEEkRlfYVaiTRAkkrLfi 344
                 ++   l+EE +++Y a+TRA+ +++i
  KOO22984.1 381 QRHSLLNEELKMLYTAMTRARVKVVI 406
                 77999****************99887 PP

>> AAA_19  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.9   0.0   2.4e-07   0.00073     105     145 ..     133     173 ..     110     174 .. 0.91
   2 ?   -3.1   0.0       2.9   8.7e+03      58      74 ..     386     401 ..     332     417 .. 0.62

  Alignments for each domain:
  == domain 1  score: 19.9 bits;  conditional E-value: 2.4e-07
      AAA_19 105 llivDEfqdvdelqyrLlkallgekkklllvGDpdQliyvf 145
                  + vDE+qd ++ + rL+ +++ +k+ l++ GD  Q+i  +
  KOO22984.1 133 EIYVDEVQDFTQAEIRLFLEVCVDKNALFFTGDTCQTIARG 173
                 589*******************99999**********9876 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 2.9
      AAA_19  58 lrerlaalgaeatTiHr 74 
                 l+e+l +++  a+T  r
  KOO22984.1 386 LNEEL-KMLYTAMTRAR 401
                 34444.33444444444 PP

>> UvrD-helicase  UvrD/REP helicase N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.3   0.0   2.2e-07   0.00065     213     296 ..      91     170 ..      78     185 .. 0.77

  Alignments for each domain:
  == domain 1  score: 19.3 bits;  conditional E-value: 2.2e-07
                    HHHHHHHHHHHHHHHTCEEHHHHHHHHHHHHHHCHHHHHHHHHHSSEEEESSGGG-BHHHHHHHHHHHTTTTTEEEEE-GGG-- CS
  UvrD-helicase 213 iaeflkeyqeqkkeenalDfsdllhallelleeneelaealrerykeiliDEyQDTnkiQyrilkllasgheelfmvGDpkQsI 296
                    +++++ +y+  k+   a D  d   a++++l++      +   r +ei +DE QD  ++ +r++  ++ +++ lf+ GD+ Q I
     KOO22984.1  91 VYDLYLKYEAWKESIGAYDVMDACFAIYTALRA----EGYRGPRLDEIYVDEVQDFTQAEIRLFLEVCVDKNALFFTGDTCQTI 170
                    555556666666666666666666666666665....45556799**************************99*********99 PP

>> Dermcidin  Dermcidin, antibiotic peptide
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   1.0   1.7e-05      0.05       5      54 ..     340     392 ..     335     400 .. 0.85

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 1.7e-05
   Dermcidin   5 eaasasgsgnpsreasaaqkenagedpvlarqapkpr...kqrsslleksldg 54 
                 e   asg    s+ asaa+  +  e   l+ qap+p    +qr sll+  l+ 
  KOO22984.1 340 ERERASGRERCSERASAADVADEAEGAELSIQAPRPEsfdRQRHSLLNEELKM 392
                 55678999999*************************64448******998875 PP

>> Viral_helicase1  Viral (Superfamily 1) RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.0      0.36   1.1e+03      66     100 ..     134     169 ..     123     181 .. 0.80
   2 ?    3.0   0.0     0.024        71     167     202 ..     265     304 ..     236     315 .. 0.76
   3 ?    5.1   0.1    0.0053        16     211     233 ..     385     407 ..     377     408 .. 0.79

  Alignments for each domain:
  == domain 1  score: -0.8 bits;  conditional E-value: 0.36
  Viral_helicase1  66 lilDEylllhaGyill.laalskaklvilfGDplQi 100
                      + +DE +  ++++i l l        ++ +GD++Q 
       KOO22984.1 134 IYVDEVQDFTQAEIRLfLEVCVDKNALFFTGDTCQT 169
                      678999999998888866666667778889***994 PP

  == domain 2  score: 3.0 bits;  conditional E-value: 0.024
  Viral_helicase1 167 lvyltftqalkealgvr....evttvhevqGltfdkVtlv 202
                       v+l   qa+ke+l ++     ++t  e+ Gl+fd+V l+
       KOO22984.1 265 QVVLVRDQAAKERLPAElqsaLTLTIFEAKGLEFDDVFLF 304
                      455556666667666667766678999**********986 PP

  == domain 3  score: 5.1 bits;  conditional E-value: 0.0053
  Viral_helicase1 211 lisesrenllvAlTRhrkslvil 233
                      l++e+   l++A+TR+r ++vi+
       KOO22984.1 385 LLNEELKMLYTAMTRARVKVVIY 407
                      44566889*************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (431 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       448  (0.0249875); expected 358.6 (0.02)
Passed bias filter:                      346  (0.0192983); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.51u 0.25s 00:00:00.76 Elapsed: 00:00:00.42
# Mc/sec: 3097.24
//
Query:       KOO22985.1  [L=296]
Description: hypothetical protein Ctob_009184 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (296 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       332  (0.0185175); expected 358.6 (0.02)
Passed bias filter:                      310  (0.0172904); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.41u 0.23s 00:00:00.64 Elapsed: 00:00:00.38
# Mc/sec: 2337.03
//
Query:       KOO22986.1  [L=883]
Description: wd repeat-containing protein 19 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.1e-12   47.2   2.1      0.003   17.8   0.1    7.5  9  ANAPC4_WD40     Anaphase-promoting complex subunit 4 WD40 dom
  ------ inclusion threshold ------
      0.042   13.6   2.1        2.9    7.6   2.0    3.5  2  Gmad1           Lipoprotein LpqB beta-propeller domain
      0.082   12.1   0.0          1    8.5   0.0    2.6  2  SdiA-regulated  SdiA-regulated


Domain annotation for each model (and alignments):
>> ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.0   0.0     0.044   2.6e+02      25      60 ..      73     107 ..      61     127 .. 0.77
   2 ?    2.5   0.0      0.03   1.8e+02      46      90 ..     149     195 ..     132     197 .. 0.76
   3 ?    3.0   0.0     0.021   1.2e+02      53      90 ..     155     195 ..     147     226 .. 0.56
   4 ?   -1.0   0.0      0.37   2.2e+03       8      55 ..     199     250 ..     192     277 .. 0.66
   5 !    6.6   0.0    0.0016       9.5      37      73 ..     289     324 ..     269     358 .. 0.81
   6 ?    1.5   0.0     0.063   3.8e+02      37      62 ..     378     403 ..     366     410 .. 0.82
   7 !   17.8   0.1     5e-07     0.003       2      75 ..     474     549 ..     473     560 .. 0.85
   8 !    4.5   0.1     0.007        42      46      89 ..     573     616 ..     558     619 .. 0.82
   9 ?    1.1   0.0     0.084     5e+02      35      62 ..     673     703 ..     654     724 .. 0.73

  Alignments for each domain:
  == domain 1  score: 2.0 bits;  conditional E-value: 0.044
  ANAPC4_WD40  25 ngqrvwtleedkedsevrsLaWkpdgklLavaysdg 60 
                   g+ ++ ++ +ke++ +  L W+p+g  La + + g
   KOO22986.1  73 TGKTIYRVQLPKEGRCI-FLGWEPSGAALAAVQDHG 107
                  56778888666666666.69*********9988776 PP

  == domain 2  score: 2.5 bits;  conditional E-value: 0.03
  ANAPC4_WD40  46 WkpdgklLavaysdgevrlldaesgkvv...hslsvksekavtclgWg 90 
                  W++  + L+ + +dg+    d es ++    +++  k+++a+tc  Wg
   KOO22986.1 149 WSKT-RKLVLGLADGNFACWDLESNETFisrKHFAGKHKNAITCGAWG 195
                  5544.56899**************999722234555566699998886 PP

  == domain 3  score: 3.0 bits;  conditional E-value: 0.021
  ANAPC4_WD40  53 Lavaysdgevrlldaesgkvv...hslsvksekavtclgWg 90 
                  L+ + +dg+    d es ++    +++  k+++a+tc  Wg
   KOO22986.1 155 LVLGLADGNFACWDLESNETFisrKHFAGKHKNAITCGAWG 195
                  45555555555555555555411122333333355555443 PP

  == domain 4  score: -1.0 bits;  conditional E-value: 0.37
  ANAPC4_WD40   8 DLiAlatedgellvfRlngqrvwtl.....eedkedsevrsLaWkpdgklLav 55 
                  D++Al++ ++++ v+    +  w++     e  ++d   ++L+++p+g+ +  
   KOO22986.1 199 DILALGS-KNQIKVSEPLLNASWEAtsaklELLDNDLALQELEFSPSGQTMSA 250
                  5566654.345555555555555554444444567788888888888887755 PP

  == domain 5  score: 6.6 bits;  conditional E-value: 0.0016
  ANAPC4_WD40  37 edsevrsLaWkpdgklLavaysdgevrlldaesgkvv 73 
                  + + +++L W +++ + av++s+g vr+l+  +g+ v
   KOO22986.1 289 TIGGIQELVWLENE-MVAVVTSNGYVRFLQYGTGEGV 324
                  556789999*8875.78************99999866 PP

  == domain 6  score: 1.5 bits;  conditional E-value: 0.063
  ANAPC4_WD40  37 edsevrsLaWkpdgklLavaysdgev 62 
                  ++ + ++L+ + dg++L  + sdg++
   KOO22986.1 378 DGVRYQKLQGSTDGEFLLLGRSDGQI 403
                  556667888999************98 PP

  == domain 7  score: 17.8 bits;  conditional E-value: 5e-07
  ANAPC4_WD40   2 swcptmDLiAlatedgel.lvfRlngqrvwtleedkedsevrsLaWkpd.gklLavaysdgevrlldaesgkvvhs 75 
                  +w+ ++ L+A++++++e+ +v+Rl    + ++ +++   ++ sL+W p   ++La+a+    + l d ++ + v+ 
   KOO22986.1 474 AWSHSRQLLAVVNDKQEIvVVQRLADGSMKKIMKEGLPDTIISLSWDPTsQSVLAIAIRGHGIALWDTKTDHGVQM 549
                  8************999962579**888888887889999********972579******999***99999887765 PP

  == domain 8  score: 4.5 bits;  conditional E-value: 0.007
  ANAPC4_WD40  46 WkpdgklLavaysdgevrlldaesgkvvhslsvksek.avtclgW 89 
                  W+  g+ Lav+++dg+  + d+ s ++  s s++++k a++   W
   KOO22986.1 573 WNLAGQ-LAVGMQDGTFAVWDSMSMDISTSGSTGKHKsAIQAAAW 616
                  777886.8*****************99998888777645666666 PP

  == domain 9  score: 1.1 bits;  conditional E-value: 0.084
  ANAPC4_WD40  35 dkedsevrsLaWkpdgklL...avaysdgev 62 
                  d ++ + ++L+++p+gk+L   av ++  + 
   KOO22986.1 673 DLDGLTFEDLQFSPNGKFLgalAVPVASERT 703
                  556677889********97222555555555 PP

>> Gmad1  Lipoprotein LpqB beta-propeller domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.0      0.22   1.3e+03     136     183 ..     258     309 ..     185     313 .. 0.63
   2 ?    7.6   2.0   0.00048       2.9      28     189 ..     473     754 ..     465     785 .. 0.77

  Alignments for each domain:
  == domain 1  score: -1.1 bits;  conditional E-value: 0.22
       Gmad1 136 gkvyvavVvrdadGqksltapvala...tg.lleeavsvsWrsedtLvVlrs 183
                 +++ + +V  +++G+   t  ++++    +     + +++W+++++++V++s
  KOO22986.1 258 RHLCLYGVKINDNGKTVSTTLTPVGemhPNsTIGGIQELVWLENEMVAVVTS 309
                 5555666666666633333333332100210224577888999999998876 PP

  == domain 2  score: 7.6 bits;  conditional E-value: 0.00048
       Gmad1  28 aAvSrdgqqvaavtapdggrtLvvg.syggeasevlegg...sltrpSwdrd.galWv.vedgaevvravrddaegeva.................... 100
                 +A S++ q +a+v+  d+++ +vv+   +g +++++++g   ++ ++Swd+  +++ + +++g + +  + +++ g  +                    
  KOO22986.1 473 VAWSHSRQLLAVVN--DKQEIVVVQrLADGSMKKIMKEGlpdTIISLSWDPTsQSVLAiAIRGHGIALWDTKTDHGVQMwsgmsykgmftkgqkqfdpa 569
                 68899999999999..44444444434677788888776788999999998876665514556666666665445555588888999999999999999 PP

       Gmad1 101 ................................................................................................vve 103
                                                                                                                    
  KOO22986.1 570 ittwnlagqlavgmqdgtfavwdsmsmdistsgstgkhksaiqaaawyssmfspalalaskstikvsqgfegvewsatamklklakerrfslssmmSSS 668
                 999999999999999999999999999999999999999999999999999999999999999999999999999999888888888888876443233 PP

       Gmad1 104 VdasalragpvtelrvSrDGtRaAvivekdgggkvyvavVvrdadGqksltapvalatglleeavsvsWrsedtLvVlrsseggpv 189
                     +l++ + ++l+ S+ G  +  ++   + ++ +v vV + +d  ksl+  +++  +++ +     W+ + t+v   ++++g+v
  KOO22986.1 669 SANDDLDGLTFEDLQFSPNGKFLGALAVPVASERTRVCVVYELQDERKSLVLTREVMLDEGVTPIHFRWLVDNTIVLFCRQSSGAV 754
                 3333344488999999999865544443445888999999999999999999999999999999999***9999999888877755 PP

>> SdiA-regulated  SdiA-regulated
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.5   0.0     0.097   5.8e+02      33      51 ..     477     495 ..     471     513 .. 0.72
   2 ?    8.5   0.0   0.00017         1     117     140 ..     635     658 ..     584     720 .. 0.86

  Alignments for each domain:
  == domain 1  score: -0.5 bits;  conditional E-value: 0.097
  SdiA-regulated  33 dtktLfavtnkpeelveLs 51 
                     ++++L+av+n ++e+v ++
      KOO22986.1 477 HSRQLLAVVNDKQEIVVVQ 495
                     4677888888888888765 PP

  == domain 2  score: 8.5 bits;  conditional E-value: 0.00017
  SdiA-regulated 117 kNkGfEGvaydaredrLlvakErk 140
                       +GfEGv ++a+  +L +akEr 
      KOO22986.1 635 VSQGFEGVEWSATAMKLKLAKERR 658
                     468*******************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (883 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       411  (0.0229238); expected 358.6 (0.02)
Passed bias filter:                      357  (0.0199119); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.70u 0.26s 00:00:00.96 Elapsed: 00:00:00.44
# Mc/sec: 6037.27
//
Query:       KOO22987.1  [L=111]
Description: signal recognition particle 14kda (homologous alu RNA binding protein) [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    8.6e-18   64.5   0.1    1.6e-17   63.6   0.0    1.5  2  SRP14     Signal recognition particle 14kD protein


Domain annotation for each model (and alignments):
>> SRP14  Signal recognition particle 14kD protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.6   0.0   9.2e-22   1.6e-17       1      96 []       4      88 ..       4      88 .. 0.87
   2 ?   -2.7   0.4      0.43   7.8e+03      11      16 ..      95     100 ..      89     108 .. 0.40

  Alignments for each domain:
  == domain 1  score: 63.6 bits;  conditional E-value: 9.2e-22
       SRP14  1 lsndeFlteLtelfeksrekgkgsVyltqKrlteakkaeskeeeesseekeykcLiRatdgkkkkkvkisTvVeakdlekFqarYaevlkagmdgL 96
                l+ d+Flt+Lt+++e+s++ g  +Vy+t+Kr+++ + +  +       ++e +cL+R    k+k    is +V+akd  +F+++Y ++lk ++d+L
  KOO22987.1  4 LDADAFLTQLTRILESSKTAG--TVYVTMKRYVPPEGKGPP-----DADREPRCLVRTVGAKRK----ISAMVAAKDYRRFMQSYGNILKVSLDSL 88
                689*************77777..********8863333333.....467899*****9988888....************************9987 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 0.43
       SRP14  11 telfek 16 
                 ++ ++k
  KOO22987.1  95 KKTINK 100
                 222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (111 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1035  (0.0577277); expected 358.6 (0.02)
Passed bias filter:                      454  (0.0253221); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.25s 00:00:00.63 Elapsed: 00:00:00.40
# Mc/sec: 825.81
//
Query:       KOO22988.1  [L=213]
Description: ankyrin repeat domain-containing protein 39 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    7.8e-18   64.8   0.0    1.9e-11   44.4   0.0    1.7  2  Ank_2          Ankyrin repeats (3 copies)
    4.9e-12   46.1   0.0    2.7e-06   27.8   0.0    3.1  3  Ank_4          Ankyrin repeats (many copies)
    9.7e-11   40.9   0.0     0.0038   17.6   0.0    3.5  3  Ank_3          Ankyrin repeat
    2.2e-10   40.6   0.2    1.1e-06   28.8   0.1    2.4  2  Ank_5          Ankyrin repeats (many copies)
    2.2e-08   34.2   0.1     0.0012   19.2   0.0    3.1  3  Ank            Ankyrin repeat
     0.0016   18.9   3.1     0.0026   18.3   0.0    2.8  3  PKS_DE         Polyketide synthase dimerisation element domai


Domain annotation for each model (and alignments):
>> Ank_2  Ankyrin repeats (3 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.4   0.0   6.5e-15   1.9e-11       3      81 ..       5      95 ..       3      97 .. 0.84
   2 !   25.4   0.0   5.5e-09   1.6e-05      14      66 ..      50     113 ..      47     117 .. 0.68

  Alignments for each domain:
  == domain 1  score: 44.4 bits;  conditional E-value: 6.5e-15
       Ank_2  3 lAakngnlelvklLl.egadpn.k...ngktaLhyAakngnleivklLleh...ad...ndgrtpLhyAars.ghleivklLlekgadinl 81
                 A+++g+   v  Ll +g  ++      g taL +Aa +g++e+++l l h    d   ++g tpLh+A ++ +h ei++lLl+ +ad+ +
  KOO22988.1  5 RAVEYGDVARVAALLeAGEPVDqPggpYGSTALGWAAVSGHVELAQLCLRHgakPDakaRKGSTPLHMATWNgDHDEIARLLLQADADPSI 95
                689999888899999877666652467***********************99773355789*********995599*******98999876 PP

  == domain 2  score: 25.4 bits;  conditional E-value: 5.5e-09
       Ank_2  14 klLl.egadpn.k..ngktaLhyAakngnl.eivklLleh......adndgrtpLhyAarsghl 66 
                 +l l +ga+p+ k  +g t+Lh A+ ng++ ei++lLl++       +  g t+L  A ++ +l
  KOO22988.1  50 QLCLrHGAKPDaKarKGSTPLHMATWNGDHdEIARLLLQAdadpsiPNAAGLTALAQARWFHRL 113
                 5556777777763578999999999998555889999986644444446699999888655555 PP

>> Ank_4  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.9   0.0      0.12   3.6e+02      38      55 .]       2      19 ..       1      28 [. 0.57
   2 !   27.8   0.0   9.1e-10   2.7e-06       2      47 ..      34      78 ..      33      80 .. 0.93
   3 !   13.5   0.0   2.7e-05     0.081      13      50 ..      79     115 ..      78     118 .. 0.89

  Alignments for each domain:
  == domain 1  score: 1.9 bits;  conditional E-value: 0.12
       Ank_4 38 alhiAakrgnveilklLl 55
                ++++A+  g+v ++  Ll
  KOO22988.1  2 PFWRAVEYGDVARVAALL 19
                455555555555555443 PP

  == domain 2  score: 27.8 bits;  conditional E-value: 9.1e-10
       Ank_4  2 ltaLhyaaisgrlelvrlLlekgadinaqdnrsGetalhiAakrgn 47
                +taL +aa sg++el++l+l +ga ++a   r G t+lh+A ++g+
  KOO22988.1 34 STALGWAAVSGHVELAQLCLRHGAKPDAK-ARKGSTPLHMATWNGD 78
                68899***********************9.899***********97 PP

  == domain 3  score: 13.5 bits;  conditional E-value: 2.7e-05
       Ank_4  13 rlelvrlLlekgadinaqdnrsGetalhiAakrgnvei 50 
                 + e++rlLl+ +ad+    n+ G+tal  A ++ ++e+
  KOO22988.1  79 HDEIARLLLQADADPSIP-NAAGLTALAQARWFHRLEM 115
                 7899*************8.********99888888877 PP

>> Ank_3  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.8   0.0    0.0041        12       5      30 ..       2      26 ..       1      27 [. 0.89
   2 !   17.6   0.0   1.3e-06    0.0038       1      30 [.      32      60 ..      32      61 .. 0.94
   3 !   12.8   0.0   4.8e-05      0.14       2      30 ..      66      94 ..      65      95 .. 0.91

  Alignments for each domain:
  == domain 1  score: 6.8 bits;  conditional E-value: 0.0041
       Ank_3  5 pLhlAarsgnleivkfLlenkgadvn 30
                p+ +A+++g++++v +Lle  g +v+
  KOO22988.1  2 PFWRAVEYGDVARVAALLE-AGEPVD 26
                7889***************.788776 PP

  == domain 2  score: 17.6 bits;  conditional E-value: 1.3e-06
       Ank_3  1 nGetpLhlAarsgnleivkfLlenkgadvn 30
                +G t+L +Aa sg++e+++++l+ +ga ++
  KOO22988.1 32 YGSTALGWAAVSGHVELAQLCLR-HGAKPD 60
                699********************.9**987 PP

  == domain 3  score: 12.8 bits;  conditional E-value: 4.8e-05
       Ank_3  2 GetpLhlAarsgnle.ivkfLlenkgadvn 30
                G tpLh+A  +g+++ i+++Ll+   ad+ 
  KOO22988.1 66 GSTPLHMATWNGDHDeIARLLLQ-ADADPS 94
                89************88*******.899986 PP

>> Ank_5  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.0   2.3e-06    0.0068       1      56 []      18      73 ..      18      73 .. 0.91
   2 !   28.8   0.1   3.5e-10   1.1e-06       2      53 ..      53     104 ..      53     107 .. 0.95

  Alignments for each domain:
  == domain 1  score: 16.7 bits;  conditional E-value: 2.3e-06
       Ank_5  1 Llehg.padvnrldgggntpLhvAakygaadvvrlLlargadlnltdsrGltaldlA 56
                Lle+g p+d     ++g t+L +Aa  g+ ++++l+l +ga ++++   G+t+l++A
  KOO22988.1 18 LLEAGePVDQPGG-PYGSTALGWAAVSGHVELAQLCLRHGAKPDAKARKGSTPLHMA 73
                7888888888775.6788*************************************98 PP

  == domain 2  score: 28.8 bits;  conditional E-value: 3.5e-10
       Ank_5   2 lehgpadvnrldgggntpLhvAak.ygaadvvrlLlargadlnltdsrGltal 53 
                 l+hg a ++++ ++g tpLh+A + + + +++rlLl   ad+ + ++ Gltal
  KOO22988.1  53 LRHG-AKPDAKARKGSTPLHMATWnGDHDEIARLLLQADADPSIPNAAGLTAL 104
                 5788.99999******************************************8 PP

>> Ank  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.0      0.94   2.8e+03       8      24 ..       5      22 ..       2      27 .. 0.71
   2 !   11.2   0.0   0.00014      0.42       1      30 [.      32      62 ..      32      63 .. 0.93
   3 !   19.2   0.0     4e-07    0.0012       2      31 ..      66      97 ..      65      98 .. 0.78

  Alignments for each domain:
  == domain 1  score: -1.0 bits;  conditional E-value: 0.94
                HHHHHTTHHHHHHHH.TT CS
         Ank  8 lAatngkkriiklLL.hG 24
                +A+ +g++  + +LL  G
  KOO22988.1  5 RAVEYGDVARVAALLeAG 22
                678888877788888556 PP

  == domain 2  score: 11.2 bits;  conditional E-value: 0.00014
                TSBBHHHHHHHHTTHHHHHHHH.TTTSTTCB CS
         Ank  1 dGnTPLHlAatngkkriiklLL.hGAnlnal 30
                +G T+L +Aa  g+++ ++l L hGA ++a+
  KOO22988.1 32 YGSTALGWAAVSGHVELAQLCLrHGAKPDAK 62
                699*******99*******9999*****996 PP

  == domain 3  score: 19.2 bits;  conditional E-value: 4e-07
                SBBHHHHHH.HHTTHHHHHHHH.TTTSTTCBT CS
         Ank  2 GnTPLHlAa.tngkkriiklLL.hGAnlnald 31
                G TPLH+A  ++++ +i++lLL   A++ + +
  KOO22988.1 66 GSTPLHMATwNGDHDEIARLLLqADADPSIPN 97
                89*****885555599999***4479998765 PP

>> PKS_DE  Polyketide synthase dimerisation element domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.3   0.0   8.8e-07    0.0026       4      23 ..       3      22 ..       1      30 [. 0.88
   2 ?   -3.2   0.1       4.5   1.4e+04       5       9 ..      39      43 ..      39      50 .. 0.83
   3 ?   -0.6   0.1      0.68     2e+03      11      36 ..      77     105 ..      74     110 .. 0.62

  Alignments for each domain:
  == domain 1  score: 18.3 bits;  conditional E-value: 8.8e-07
      PKS_DE  4 FWaaVereDlaaLaatLgld 23
                FW aVe +D+a +aa L+++
  KOO22988.1  3 FWRAVEYGDVARVAALLEAG 22
                *****************995 PP

  == domain 2  score: -3.2 bits;  conditional E-value: 4.5
      PKS_DE  5 WaaVe 9 
                WaaV 
  KOO22988.1 39 WAAVS 43
                99996 PP

  == domain 3  score: -0.6 bits;  conditional E-value: 0.68
      PKS_DE  11 eDlaaLaatLgl.dada...sLsavLPaLs 36 
                 +D ++ a+ L   da +   + +a L aL+
  KOO22988.1  77 GDHDEIARLLLQaDA-DpsiPNAAGLTALA 105
                 788888887766233.23555555566655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (213 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       465  (0.0259356); expected 358.6 (0.02)
Passed bias filter:                      227  (0.0126611); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.41u 0.26s 00:00:00.67 Elapsed: 00:00:00.40
# Mc/sec: 1580.26
//
Query:       KOO22989.1  [L=406]
Description: NADP-dependent alcohol dehydrogenase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.3e-21   75.7   1.8    3.3e-21   75.2   1.8    1.3  1  ADH_N         Alcohol dehydrogenase GroES-like domain
    1.3e-16   60.8   0.0    2.6e-16   59.8   0.0    1.5  1  ADH_zinc_N    Zinc-binding dehydrogenase
    5.6e-08   33.9   0.0    9.9e-08   33.1   0.0    1.4  1  ADH_zinc_N_2  Zinc-binding dehydrogenase
     0.0088   15.4   0.0      0.015   14.7   0.0    1.2  1  2-Hacid_dh_C  D-isomer specific 2-hydroxyacid dehydrogenase, 
  ------ inclusion threshold ------
       0.17   11.2   0.0       0.28   10.4   0.0    1.4  2  BKACE         beta-keto acid cleavage enzyme


Domain annotation for each model (and alignments):
>> ADH_N  Alcohol dehydrogenase GroES-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   75.2   1.8   9.3e-25   3.3e-21       3     108 ..      83     194 ..      81     195 .. 0.87

  Alignments for each domain:
  == domain 1  score: 75.2 bits;  conditional E-value: 9.3e-25
                 EEEEEEEEEEE-HHHHHHHTTSTTTTSSSSEE---EEEEEEEEESTT-CS...--TT-EEEE-SEEE.-SSSHHHHTT-GGG-TTBEETTTS...S-SS CS
       ADH_N   3 evlikvkaagiCgsDlhilkggkelevklplilGHEivGeveevgpevkk...lkvGdrVvveplis.cgeCaaCkegeenlCeeakllgvs...ldGg 94 
                  v + ++ +g+C+sD+h +++ ++  +++pl++GHEivG++++vg++  +   ++vG+r ++ ++   cg+Ca C e  enlC++ + + ++    +Gg
  KOO22989.1  83 YVDLAITHCGVCHSDVHQIDD-AWKVASFPLVPGHEIVGTIAAVGDDAVTrakFAVGQRACIGVQRGsCGSCACCLERLENLCPKITKTYAGsgkDKGG 180
                 577899**************9.8999*******************77554488*********988777***************77655555555789** PP

                 SBSEEEECGGGEEE CS
       ADH_N  95 faeyvvvpekklvk 108
                 fa+ + +p++ ++k
  KOO22989.1 181 FANLIRFPTAWVFK 194
                 ****9999988876 PP

>> ADH_zinc_N  Zinc-binding dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.8   0.0   7.2e-20   2.6e-16       1     128 [.     235     359 ..     235     361 .. 0.92

  Alignments for each domain:
  == domain 1  score: 59.8 bits;  conditional E-value: 7.2e-20
                 HHHHHHHHHHHHTT-.EEEEEESSHHHHHHHHHTTESEEEETTTCHHHHHHHHHTTTSSEEEEEESSCSHHHHHHHHHCEEEEEEEEECSCTSSEEE.. CS
  ADH_zinc_N   1 gvGlaavqlAkalGa.eviavdsseeklelakklGadevinykeadlverikeltggegvdvvfecvGsgatleaalkllkpgGrlvvvGggkgeee.. 96 
                 g+G++a+q+ +a+ + ev+a ++s+ k + a+++Ga  ++ + e d++++ +++     +d+ +++v  +a l+++l+llkp+G+l++vG+++ e++  
  KOO22989.1 235 GLGHLALQFGRAMSFgEVVALSRSPAKEAEARRFGASSFVLT-E-DPSAMAASAG---SFDLLLNTVSGHAPLDEYLALLKPRGTLACVGLPHREQKss 328
                 89***************************************9.6.7888888888...9********99**********************77777775 PP

                 EEHHHHHHTT-EEEEE-SSCHHHHHHHHHHHH CS
  ADH_zinc_N  97 fdlrnlllkeksilGsllgslreefkealdll 128
                 + ++ ++  e+ ++Gs lg   ++++e+l+++
  KOO22989.1 329 LWFQSMVPSERALIGSYLGP-YDDYEEMLAFA 359
                 7777788*************.8*****99985 PP

>> ADH_zinc_N_2  Zinc-binding dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.1   0.0   2.8e-11   9.9e-08      11     133 .]     279     394 ..     268     394 .. 0.71

  Alignments for each domain:
  == domain 1  score: 33.1 bits;  conditional E-value: 2.8e-11
                   STTHHHHH-TT-EEEEEES-HHHHH.HHHHHHEEEEEEEEE----.S-EEE-CHHHCTTT-EEEE--GGG...-...-HHHHHHHHHHHHHHH---- CS
  ADH_zinc_N_2  11 tedfeaatggegvDvvldtvggealleaslkvlpggGrlvsiggpplsaallkpakkrkgrsvkyeflfsmkas..aqadileelaalieeGklrpv 105
                     +++a+   +++D+ l+tv g+a l++ l++l+++G+l ++g p   ++ + + +    +s ++        +     d  ee++a+ +++ ++p 
    KOO22989.1 279 PSAMAAS--AGSFDLLLNTVSGHAPLDEYLALLKPRGTLACVGLPHREQKSSLWFQ-SMVPSERALIGS----YlgPYDD-YEEMLAFASAHGIQPQ 367
                   3344333..467*********99999*******888*****997532222222222.333333333333....2434577.9*************** PP

                   EEEEEEGGGHHHHHHHHHSS--SSEEEE CS
  ADH_zinc_N_2 106 vdrvfpleeaaeAhrylesgrarGKiVl 133
                   v+  fp ++++eA+++l+++ ar +iVl
    KOO22989.1 368 VE-LFPAAQVNEAIAKLRNNTARYRIVL 394
                   *8.8*****************9988886 PP

>> 2-Hacid_dh_C  D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   0.0   4.1e-06     0.015      35      80 ..     224     270 ..     213     284 .. 0.86

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 4.1e-06
                   TTSEEEEES-SHHHHHHHHHHHHTT-.EEEEESSSHHHHHCHHHHTC CS
  2-Hacid_dh_C  35 sgktvGiiGlGrIGqavakrlkafgm.kviaydrskkkeeeeeelgv 80 
                    g +vGiiG+G +G+ + +  +a+ + +v+a +rs+ ke+e+++ g+
    KOO22989.1 224 PGAKVGIIGIGGLGHLALQFGRAMSFgEVVALSRSPAKEAEARRFGA 270
                   5889**********************9********999887777666 PP

>> BKACE  beta-keto acid cleavage enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.2   0.1       2.3   8.2e+03     258     270 ..     255     267 ..     253     269 .. 0.86
   2 ?   10.4   0.0   7.9e-05      0.28     121     170 ..     345     394 ..     274     404 .. 0.82

  Alignments for each domain:
  == domain 1  score: -4.2 bits;  conditional E-value: 2.3
                 TT-EB--HHHHHH CS
       BKACE 258 lgreiatpaeaRe 270
                 l r +a  aeaR+
  KOO22989.1 255 LSRSPAKEAEARR 267
                 7899*******97 PP

  == domain 2  score: 10.4 bits;  conditional E-value: 7.9e-05
                 E---HHHHHHHHHHHHHTT-EEEEEESSHHHHHHHHHHHHTTSS-SSEEE CS
       BKACE 121 fentpedieellrrmaeagvkpeievfdvghlrnvkrlieeGllkgpllv 170
                 +  +++d+ee+l+   ++g++p++e+f +++++++ + +++   + ++++
  KOO22989.1 345 YLGPYDDYEEMLAFASAHGIQPQVELFPAAQVNEAIAKLRNNTARYRIVL 394
                 456899**************************998877777666665555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (406 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       554  (0.0308997); expected 358.6 (0.02)
Passed bias filter:                      394  (0.0219756); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.49u 0.24s 00:00:00.73 Elapsed: 00:00:00.41
# Mc/sec: 2985.94
//
Query:       KOO22990.1  [L=432]
Description: hypothetical protein Ctob_009183 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
  ------ inclusion threshold ------
      0.059   13.6   6.3       0.15   12.2   0.1    3.2  3  PEP-utilisers_N  PEP-utilising enzyme, N-terminal
       0.11   12.5   0.3        2.8    7.9   0.0    2.7  3  Serine_rich      Serine rich protein interaction domain


Domain annotation for each model (and alignments):
>> PEP-utilisers_N  PEP-utilising enzyme, N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.8   0.2     0.014   1.3e+02      63      97 ..      45      75 ..      21     118 .. 0.76
   2 ?   -0.1   0.2      0.11   9.7e+02      22      55 ..     213     247 ..     170     261 .. 0.67
   3 ?   12.2   0.1   1.7e-05      0.15       9      51 ..     288     329 ..     282     362 .. 0.77

  Alignments for each domain:
  == domain 1  score: 2.8 bits;  conditional E-value: 0.014
                     HHHHHHHHT-HHHHHHHHHHHHHHT--HHHHHHHH CS
  PEP-utilisers_N 63 feahlmlleDpelleeveerIregglnaeaAveev 97
                     +  ++  +eD +++++++++Ir    + eaA+++v
       KOO22990.1 45 LMEQANAVEDAGMADSLRSAIR----SMEAAFASV 75
                     4457778899999999999999....455665555 PP

  == domain 2  score: -0.1 bits;  conditional E-value: 0.11
                      ---G.GGHHHHHHHHHHHHHHHHHHHHHHHHHH.T CS
  PEP-utilisers_N  22 eeveaedveaelerleeAlekvreelealaeka.l 55 
                      ++++a+ v++el  l + le v+  l++ ++++ +
       KOO22990.1 213 QAPAARLVATELPALLQSLEDVAMVLQKYEKDIvV 247
                      33334447777778888888888888776665543 PP

  == domain 3  score: 12.2 bits;  conditional E-value: 1.7e-05
                      EEEEEEE..---.-----G.GGHHHHHHHHHHHHHHHHHHHHHHH CS
  PEP-utilisers_N   9 iaiGkav..eveveeeeveaedveaelerleeAlekvreeleala 51 
                      ++iG+a         +++++e v++ l++l +A ekv+++l+al 
       KOO22990.1 288 VGIGTATgdA---IGQNAQKEGVKDKLKKLSAAQEKVEHQLRALI 329
                      4455555321...245668899********************976 PP

>> Serine_rich  Serine rich protein interaction domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.9   0.0   0.00031       2.8      43      99 ..      22      78 ..      11      86 .. 0.92
   2 ?    0.7   0.1     0.051   4.6e+02      77     101 ..     219     243 ..     200     249 .. 0.85
   3 ?   -1.1   0.0      0.19   1.7e+03      39      60 ..     308     329 ..     301     334 .. 0.57

  Alignments for each domain:
  == domain 1  score: 7.9 bits;  conditional E-value: 0.00031
  Serine_rich 43 qeirlavdrlrtslrefleFargalanaaklsdknlqtkLrkqlqkledsdqilqet 99
                 ++ir++v ++ + ++  +e++++ + +a +++d +++  Lr  ++ +e ++  + + 
   KOO22990.1 22 DNIRQHVAKMAEGVEPSTEVGKELMEQANAVEDAGMADSLRSAIRSMEAAFASVGRK 78
                 689*********************************************998887665 PP

  == domain 2  score: 0.7 bits;  conditional E-value: 0.051
  Serine_rich  77 nlqtkLrkqlqkledsdqilqetsq 101
                   ++t L  +lq led + +lq+  +
   KOO22990.1 219 LVATELPALLQSLEDVAMVLQKYEK 243
                  57899999***********999876 PP

  == domain 3  score: -1.1 bits;  conditional E-value: 0.19
  Serine_rich  39 eanlqeirlavdrlrtslrefl 60 
                  + +l+++ +a ++++  lr ++
   KOO22990.1 308 KDKLKKLSAAQEKVEHQLRALI 329
                  4555555555555555555554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (432 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       623  (0.0347482); expected 358.6 (0.02)
Passed bias filter:                      454  (0.0253221); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.50u 0.23s 00:00:00.73 Elapsed: 00:00:00.39
# Mc/sec: 3309.11
//
Query:       KOO22991.1  [L=255]
Description: hypothetical protein Ctob_009186 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.1e-08   33.9  28.0     0.0048   16.7   4.7    3.9  3  YrhK      YrhK-like protein


Domain annotation for each model (and alignments):
>> YrhK  YrhK-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   4.7   2.7e-07    0.0048       3      50 ..      28      74 ..      27      83 .. 0.76
   2 !   11.2   4.4   1.4e-05      0.25       7      50 ..      93     159 ..      88     168 .. 0.87
   3 !   16.7   3.5   2.8e-07    0.0051      12      55 ..     187     230 ..     165     236 .. 0.79

  Alignments for each domain:
  == domain 1  score: 16.7 bits;  conditional E-value: 2.7e-07
        YrhK  3 yeaislandiigsllFlvGSilflpnsefwkwqi...agvwlFliGSilfl 50
                ++++++++ + g+++F++GS +++    f++w +   +g +l+ iGS  fl
  KOO22991.1 28 WKFLHAIFFLTGGITFMFGSACYY----FPDWPEsflIGRVLYMIGSCGFL 74
                57889999999**********998....66555422278888888888887 PP

  == domain 2  score: 11.2 bits;  conditional E-value: 1.4e-05
        YrhK   7 slandiigsllFlvGSilflpnse.fw......................kwqiagvwlFliGSilfl 50 
                 ++++   gs+l++vGSi + p ++                          +++ g++ F++GS++ +
  KOO22991.1  93 NIFMSATGSFLYVVGSIGYIPAVYeSTttwniitfnlttvggpafniglTPATTGAYGFIAGSFFIG 159
                 5666778*************9877544788*********************************9976 PP

  == domain 3  score: 16.7 bits;  conditional E-value: 2.8e-07
        YrhK  12 iigsllFlvGSilflpnse.fwkwqiagvwlFliGSilflirpvi 55 
                  +g+ +F+vG i+++ n++ ++++  + v  + +GS+lf+i+++ 
  KOO22991.1 187 CLGAWCFFVGTIMYY-NVSlLEAPSAYIVNIWEAGSVLFTIGALF 230
                 469************.99989988888888899********9975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (255 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       500  (0.0278878); expected 358.6 (0.02)
Passed bias filter:                      277  (0.0154498); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.24s 00:00:00.65 Elapsed: 00:00:00.40
# Mc/sec: 1894.26
//
Query:       KOO22992.1  [L=135]
Description: hypothetical protein Ctob_009180 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    3.4e-15   54.4   2.4    6.2e-07   28.5   1.1    2.3  2  EF-hand_1     EF hand
    8.8e-15   54.9   9.8    3.4e-08   33.8   1.6    2.2  3  EF-hand_7     EF-hand domain pair
    9.5e-15   53.3   4.8    1.2e-06   27.8   1.4    2.2  2  EF-hand_5     EF hand
    1.2e-13   49.8   1.6    5.3e-07   29.0   0.4    2.3  2  EF-hand_6     EF-hand domain
    5.2e-10   39.0   1.2    0.00072   19.4   0.5    2.3  2  EF-hand_8     EF-hand domain pair
    4.2e-06   26.7   0.1    9.1e-05   22.4   0.0    2.1  2  EF-hand_4     Cytoskeletal-regulatory complex EF hand
      0.003   17.8   0.2       0.14   12.5   0.1    2.2  2  SPARC_Ca_bdg  Secreted protein acidic and rich in cysteine Ca
  ------ inclusion threshold ------
      0.078   13.2   1.8        1.3    9.2   0.2    2.1  2  Dockerin_1    Dockerin type I domain
       0.11   13.1   1.7        2.1    9.0   0.1    2.2  2  VCBS          Repeat domain in Vibrio, Colwellia, Bradyrhizob
        4.2    8.1   6.5         11    6.7   0.1    2.9  2  Excalibur     Excalibur calcium-binding domain


Domain annotation for each model (and alignments):
>> EF-hand_1  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.0   0.0   4.7e-09   8.4e-06       9      28 ..      71      90 ..      66      91 .. 0.91
   2 !   28.5   1.1   3.5e-10   6.2e-07       3      26 ..      98     121 ..      97     122 .. 0.95

  Alignments for each domain:
  == domain 1  score: 25.0 bits;  conditional E-value: 4.7e-09
                HTTTSSSEEEHHHHHHHHHH CS
   EF-hand_1  9 fDkDgdGkIdfeEfkellkk 28
                +D+DgdG+Id+eEf++l++k
  KOO22992.1 71 ADVDGDGTIDREEFRALVAK 90
                8***************9987 PP

  == domain 2  score: 28.5 bits;  conditional E-value: 3.5e-10
                 HHHHHHHTTTSSSEEEHHHHHHHH CS
   EF-hand_1   3 keiFrefDkDgdGkIdfeEfkell 26 
                 +e+F+++D+DgdG++d++E+++++
  KOO22992.1  98 EEMFDKLDTDGDGTLDKKELQKMF 121
                 69********************98 PP

>> EF-hand_7  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.0   1.2e-05     0.021      51      70 ..      69      88 ..      49      89 .. 0.75
   2 !   33.8   1.6   1.9e-11   3.4e-08       6      70 ..      66     121 ..      61     122 .. 0.89
   3 !   22.1   0.4   8.4e-08   0.00015       6      29 ..      99     122 ..      94     132 .. 0.89

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 1.2e-05
   EF-hand_7 51 kefDtdkdGvisfdEFlkly 70
                   D d+dG+i+++EF++l+
  KOO22992.1 69 FAADVDGDGTIDREEFRALV 88
                34588888888888888765 PP

  == domain 2  score: 33.8 bits;  conditional E-value: 1.9e-11
   EF-hand_7   6 eaFkelDtdgdgyldkeellrllrkifqgagegsklsdeelellfkefDtdkdGvisfdEFlkly 70 
                  +  + D+dgdg +d+ee++ l+ k     + g+  s+    ++f+++Dtd+dG+++  E++k++
  KOO22992.1  66 HVLFAADVDGDGTIDREEFRALVAK-----HGGFRGSE----EMFDKLDTDGDGTLDKKELQKMF 121
                 566789**************99998.....88888787....9*******************997 PP

  == domain 3  score: 22.1 bits;  conditional E-value: 8.4e-08
   EF-hand_7   6 eaFkelDtdgdgyldkeellrllr 29 
                 e+F++lDtdgdg ldk el++++ 
  KOO22992.1  99 EMFDKLDTDGDGTLDKKELQKMFS 122
                 79******************9875 PP

>> EF-hand_5  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.8   0.1   1.3e-09   2.4e-06       7      25 .]      70      88 ..      69      88 .. 0.94
   2 !   27.8   1.4   6.5e-10   1.2e-06       3      24 ..      99     120 ..      98     122 .. 0.91

  Alignments for each domain:
  == domain 1  score: 26.8 bits;  conditional E-value: 1.3e-09
                HH-SS-SSCE-HHHHHHHH CS
   EF-hand_5  7 aiDlNgDGkIskeELktlv 25
                a+D++gDG+I++eE+++lv
  KOO22992.1 70 AADVDGDGTIDREEFRALV 88
                69**************986 PP

  == domain 2  score: 27.8 bits;  conditional E-value: 6.5e-10
                 HHHHHH-SS-SSCE-HHHHHHH CS
   EF-hand_5   3 dtFqaiDlNgDGkIskeELktl 24 
                 ++F+++D++gDG+++k EL+++
  KOO22992.1  99 EMFDKLDTDGDGTLDKKELQKM 120
                 68******************95 PP

>> EF-hand_6  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.5   0.0   3.4e-07    0.0006       9      27 ..      71      89 ..      64      93 .. 0.86
   2 !   29.0   0.4     3e-10   5.3e-07       4      27 ..      99     122 ..      97     125 .. 0.92

  Alignments for each domain:
  == domain 1  score: 19.5 bits;  conditional E-value: 3.4e-07
   EF-hand_6  9 fDkdgdGkidaeElrkalr 27
                 D+dgdG+id+eE+r++  
  KOO22992.1 71 ADVDGDGTIDREEFRALVA 89
                59*************9876 PP

  == domain 2  score: 29.0 bits;  conditional E-value: 3e-10
   EF-hand_6   4 eaFklfDkdgdGkidaeElrkalr 27 
                 e F+++D+dgdG++d++El+k+++
  KOO22992.1  99 EMFDKLDTDGDGTLDKKELQKMFS 122
                 89********************98 PP

>> EF-hand_8  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.2   0.0     9e-07    0.0016      29      54 ..      65      90 ..      53      91 .. 0.90
   2 !   19.4   0.5     4e-07   0.00072      29      48 ..      98     117 ..      97     122 .. 0.88

  Alignments for each domain:
  == domain 1  score: 18.2 bits;  conditional E-value: 9e-07
   EF-hand_8 29 dilfrefDtdgdGkisfeEFcvller 54
                ++++ ++D dgdG+i+ eEF +l+++
  KOO22992.1 65 THVLFAADVDGDGTIDREEFRALVAK 90
                78999****************99875 PP

  == domain 2  score: 19.4 bits;  conditional E-value: 4e-07
   EF-hand_8  29 dilfrefDtdgdGkisfeEF 48 
                 +++f+++DtdgdG+++++E 
  KOO22992.1  98 EEMFDKLDTDGDGTLDKKEL 117
                 68****************97 PP

>> EF-hand_4  Cytoskeletal-regulatory complex EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.4   0.0   5.1e-08   9.1e-05      18      66 ..      37      85 ..      30      90 .. 0.92
   2 ?    2.1   0.1       0.1   1.9e+02      47      65 ..      99     117 ..      96     121 .. 0.83

  Alignments for each domain:
  == domain 1  score: 22.4 bits;  conditional E-value: 5.1e-08
   EF-hand_4 18 glkpednkltgdkvapvlknskleedklekiwdladidedgkldfeefc 66
                 l+ ++  + g + a++ k s +++ +l+++   ad+d dg++d eef 
  KOO22992.1 37 DLQAHEAAMGGRNCAAMWKTSAVNSMRLTHVLFAADVDGDGTIDREEFR 85
                577888999999***********************************95 PP

  == domain 2  score: 2.1 bits;  conditional E-value: 0.1
   EF-hand_4  47 kiwdladidedgkldfeef 65 
                 +++d  d d dg+ld +e+
  KOO22992.1  99 EMFDKLDTDGDGTLDKKEL 117
                 5678889********8885 PP

>> SPARC_Ca_bdg  Secreted protein acidic and rich in cysteine Ca binding region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.5   0.0     0.048        86      92     110 ..      66      84 ..      33      89 .. 0.81
   2 !   12.5   0.1     8e-05      0.14      59      79 ..     100     120 ..      97     123 .. 0.93

  Alignments for each domain:
  == domain 1  score: 3.5 bits;  conditional E-value: 0.048
  SPARC_Ca_bdg  92 pflescDadkdkkislkEw 110
                   + l ++D+d d++i+++E+
    KOO22992.1  66 HVLFAADVDGDGTIDREEF 84 
                   5566789999999999998 PP

  == domain 2  score: 12.5 bits;  conditional E-value: 8e-05
  SPARC_Ca_bdg  59 kFsklDtnsdkvlsksELapl 79 
                   +F+klDt+ d++l+k+EL+++
    KOO22992.1 100 MFDKLDTDGDGTLDKKELQKM 120
                   8*****************987 PP

>> Dockerin_1  Dockerin type I domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.2   0.2   0.00075       1.3      35      47 ..      69      81 ..      60      91 .. 0.83
   2 ?    8.4   2.2    0.0013       2.4       2      48 ..      71     115 ..      70     123 .. 0.72

  Alignments for each domain:
  == domain 1  score: 9.2 bits;  conditional E-value: 0.00075
                GGGSTT-SSCESH CS
  Dockerin_1 35 kaaDvNgDGrvna 47
                 aaDv+gDG+++ 
  KOO22992.1 69 FAADVDGDGTIDR 81
                6899999999986 PP

  == domain 2  score: 8.4 bits;  conditional E-value: 0.0013
                 TETTSSSC-SHHHHHHHHHHCTSSEBTTSCCCHGGGSTT-SSCESHH CS
  Dockerin_1   2 gDVNgDgkVnalDalliinylnqregqssssngkaaDvNgDGrvnal 48 
                 +DV+gDg+++   + ++       + ++s+++ +++D +gDG+ ++ 
  KOO22992.1  71 ADVDGDGTIDREEFRALVAKHG--GFRGSEEMFDKLDTDGDGTLDKK 115
                 6888888888887777666666..67777888888888888877765 PP

>> VCBS  Repeat domain in Vibrio, Colwellia, Bradyrhizobium and Shewanella
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.0   0.1    0.0012       2.1      44      58 ..      66      80 ..      45      80 .. 0.70
   2 ?    3.3   0.3     0.073   1.3e+02      50      58 ..     105     113 ..      88     113 .. 0.83

  Alignments for each domain:
  == domain 1  score: 9.0 bits;  conditional E-value: 0.0012
        VCBS 44 tgvavgDlDgDGdlD 58
                + + ++D+DgDG  D
  KOO22992.1 66 HVLFAADVDGDGTID 80
                246799******877 PP

  == domain 2  score: 3.3 bits;  conditional E-value: 0.073
        VCBS  50 DlDgDGdlD 58 
                 D DgDG lD
  KOO22992.1 105 DTDGDGTLD 113
                 778888887 PP

>> Excalibur  Excalibur calcium-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.7   2.5      0.24   4.2e+02       2      12 ..      48      58 ..      48      78 .. 0.73
   2 ?    6.7   0.1    0.0062        11      22      34 ..     101     110 ..      86     111 .. 0.66

  Alignments for each domain:
  == domain 1  score: 1.7 bits;  conditional E-value: 0.24
   Excalibur  2 knCtelrkagk 12
                +nC++++k  +
  KOO22992.1 48 RNCAAMWKTSA 58
                69999999766 PP

  == domain 2  score: 6.7 bits;  conditional E-value: 0.0062
   Excalibur  22 YkankklDrDkDG 34 
                 +    klD D+DG
  KOO22992.1 101 F---DKLDTDGDG 110
                 3...49******* PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (135 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       285  (0.015896); expected 358.6 (0.02)
Passed bias filter:                      274  (0.0152825); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.38u 0.21s 00:00:00.59 Elapsed: 00:00:00.37
# Mc/sec: 1097.98
//
Query:       KOO22993.1  [L=177]
Description: hypothetical protein Ctob_009188, partial [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.037   13.6   0.0      0.056   13.1   0.0    1.2  1  Drf_FH3   Diaphanous FH3 Domain


Domain annotation for each model (and alignments):
>> Drf_FH3  Diaphanous FH3 Domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.0   3.1e-06     0.056     119     177 ..      19      78 ..      11      91 .. 0.83

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 3.1e-06
                 XXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXX..XXXXXXXXXXXXXXXXXXXXXXXXXX CS
     Drf_FH3 119 dpeelfellknkvkdteaepyllsilq.hlllirddeeekesylklleelvsqivlqrtk 177
                 d++e +e+++n+  +t++e +l+ ++    +l++++++ k++y k+++ l sq++ +++ 
  KOO22993.1  19 DNDEYLESIHNEGPGTSNEELLYQAIAyTKMLAENRMKPKPEYKKIIDDLRSQMSEDEQR 78 
                 678999****************66665155555*********************988765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (177 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       630  (0.0351386); expected 358.6 (0.02)
Passed bias filter:                      467  (0.0260472); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.28s 00:00:00.69 Elapsed: 00:00:00.43
# Mc/sec: 1226.93
//
Query:       KOO22994.1  [L=357]
Description: translocator of the inner chloroplast membrane [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      3e-11   43.2   0.0      4e-11   42.8   0.0    1.1  1  Tic22     Tic22-like family


Domain annotation for each model (and alignments):
>> Tic22  Tic22-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.8   0.0   2.2e-15     4e-11      26     202 ..      88     285 ..      65     307 .. 0.80

  Alignments for each domain:
  == domain 1  score: 42.8 bits;  conditional E-value: 2.2e-15
       Tic22  26 raalpappfas...isqeaegaaaat....aLssdevaktLaGvpvytvsnsnnefvlvsdpdgeksigllcfrqedAeafLaqvkkrkrelrsqakvv 117
                 ++  pap +a    ++q+ +  + ++     L   + + +La vpv+ v+n  + + l   ++g +s  ++ +   +Ae +L+ v k  +  +s+akv 
  KOO22994.1  88 HRGGPAPAWAAdaaVAQAPAARTLNAaqrkRLK-LAFKAKLAKVPVFMVTNDGGSPFLNQLSTGDQSALMF-LFPAEAERMLNGVLKAPNGAASGAKVL 184
                 555667777541113333222222223332222.235678******************9999999886555.66788********9999999******* PP

       Tic22 118 pvaLdkvvkl................kvegiaFrflPdpvqvknAlelkasevkdgfdGvPvFqsrlLvvkkenkryiPvffrkediekelsrvsreqr 200
                 +  Ld+ ++l                +   + ++f+P+++  ++A+ + a+ +k   + vP +  + Lvv k+ k+++P+f+ k d +  l  ++ + +
  KOO22994.1 185 ATNLDRAFRLarlqplpsglrdqvtnRELTMVWQFMPHAAETRSAQLVLAKSGKLSAPSVPAYMVDGLVVTKRGKEVRPLFLCKRDCDAALAMLQAQAQ 283
                 **********************8876666899*********************************************************9997776666 PP

       Tic22 201 kl 202
                 + 
  KOO22994.1 284 AA 285
                 54 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (357 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       308  (0.0171789); expected 358.6 (0.02)
Passed bias filter:                      223  (0.0124379); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.25s 00:00:00.71 Elapsed: 00:00:00.42
# Mc/sec: 2548.59
//
Query:       KOO22995.1  [L=197]
Description: hypothetical protein Ctob_000976 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
  ------ inclusion threshold ------
        0.1   12.5   0.2        0.1   12.5   0.2    2.1  2  Phe_tRNA-synt_N  Aminoacyl tRNA synthetase class II, N-termin


Domain annotation for each model (and alignments):
>> Phe_tRNA-synt_N  Aminoacyl tRNA synthetase class II, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.2   5.7e-06       0.1       4      36 ..      32      64 ..      29      79 .. 0.89
   2 ?   -3.6   0.9      0.62   1.1e+04      55      65 ..     114     124 ..     111     128 .. 0.59

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 5.7e-06
                     CCCCCCHHHHHCCCCCCCCCCCTTTTCCCCTTT CS
  Phe_tRNA-synt_N  4 eeLeelRvkyLGkkGeltellkelgklppeeRk 36
                     ++L+ + ++  G + ++te+++++++lp+e + 
       KOO22995.1 32 KKLQSMQAQAQGGNLSVTEIMAQMKALPAEAKM 64
                     6788888888899999**************996 PP

  == domain 2  score: -3.6 bits;  conditional E-value: 0.62
                      CHHHCCHCCHH CS
  Phe_tRNA-synt_N  55 erkeeleaael 65 
                      er++e++++++
       KOO22995.1 114 EREQEMREEQQ 124
                      56666666654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (197 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       753  (0.041999); expected 358.6 (0.02)
Passed bias filter:                      468  (0.026103); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.27s 00:00:00.67 Elapsed: 00:00:00.40
# Mc/sec: 1488.68
//
Query:       KOO22996.1  [L=122]
Description: hypothetical protein Ctob_000974 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
  ------ inclusion threshold ------
      0.021   14.2   0.3      0.026   13.9   0.0    1.3  2  Glyco_transf_29  Glycosyltransferase family 29 (sialyltransfe


Domain annotation for each model (and alignments):
>> Glyco_transf_29  Glycosyltransferase family 29 (sialyltransferase)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.0   1.5e-06     0.026     198     235 ..      31      71 ..      13      83 .. 0.79
   2 ?   -3.4   0.0      0.27   4.9e+03     255     268 ..     108     121 ..      99     122 .] 0.80

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 1.5e-06
  Glyco_transf_29 198 stGllaltlAlhlCdeVslyGFgp.sedse....klslHYydk 235
                       +G  al++Al+lC  V++yG g  s+       k+  H yd+
       KOO22996.1  31 GSGGNALHAALSLCAAVDVYGSGLhSR--GvghdKIYAHAYDE 71 
                      5788899**************998433..12355999999987 PP

  == domain 2  score: -3.4 bits;  conditional E-value: 0.27
  Glyco_transf_29 255 llkkLhkegvikll 268
                      ll+ Lh  gv++++
       KOO22996.1 108 LLHVLHALGVVRWV 121
                      67889999999986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (122 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       254  (0.014167); expected 358.6 (0.02)
Passed bias filter:                      229  (0.0127726); expected 358.6 (0.02)
Passed Vit filter:                        12  (0.000669307); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.24s 00:00:00.60 Elapsed: 00:00:00.40
# Mc/sec: 921.41
//
Query:       KOO22997.1  [L=436]
Description: threonine dehydratase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.1e-73  246.8   3.5    4.1e-73  246.4   3.5    1.2  1  PALP      Pyridoxal-phosphate dependent enzyme
     0.0019   17.9   1.8     0.0079   15.9   0.0    2.7  3  ACT       ACT domain
  ------ inclusion threshold ------
      0.018   15.7   0.0      0.042   14.4   0.0    1.6  1  ACT_4     ACT domain
       0.11   12.1   0.0       0.26   10.9   0.0    1.5  1  TPMT      Thiopurine S-methyltransferase (TPMT)


Domain annotation for each model (and alignments):
>> PALP  Pyridoxal-phosphate dependent enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  246.4   3.5   9.1e-77   4.1e-73       2     294 .]      22     312 ..      21     312 .. 0.97

  Alignments for each domain:
  == domain 1  score: 246.4 bits;  conditional E-value: 9.1e-77
                 GGCSSS--EEEECCTCCCCCCEEEEEEGGGSTTSBTTHHHHHHHHHHHHTTTTTSEEEEEBSSHHHHHHHHHHHHHT-EEEEEEETTS-HHHHHHHHHT CS
        PALP   2 tlgigpTPlvrlprlskelgvplflKlEslnptgSfKdRgaeyllarlkegtgaktvveassGNhgralAaaaallGlkvtivvpadaspekvallrll 100
                 ++gi +T + r++ ls+ +g  + +KlE  + tgSfK Rga ++l++l+ + ++++vv+as+GNh++al + +  lG++vt+v+p  a+ +kv+++rl+
  KOO22997.1  22 RGGIVRTSCQRSHWLSEITGSHVHFKLEQQQFTGSFKERGARNALLSLDGEARRRGVVAASAGNHALALTWHGVQLGIPVTVVMPTVAPMAKVDKCRLF 120
                 678999*****************************************99999*********************************************** PP

                 T-EEEEECCHHHHHHHHHHHHHHHSTTCEE--TTTSHHHHHHHHTHHHHHHHHTTTTEEEEEEE-SSSHHHHHHHHHHHHHSTT-EEEEEEECTTCGGT CS
        PALP 101 GaevvevggdydeavaaaaelaaegegaylvsqfdnptviegygtiglEileqlggkpdavvvpvGgGgliaGiaaglkerrpdvrvigvepegsdala 199
                 Ga+vv  g    e++++  +l+   ++  +++ +d+p +i+g gt+g+E+leq+ ++ davvvpvGgGgliaGia ++k   p  rvigvep++++++ 
  KOO22997.1 121 GANVVIHGAHIGESKQH--ALEVY-GDLRYINGYDDPEIIAGTGTLGMEMLEQV-PDCDAVVVPVGGGGLIAGIALAMKTMQPGLRVIGVEPKRCASYS 215
                 *****************..55555.77***************************.6******************************************* PP

                 TCCS..S.SS..B.SSS.CCSTCSCGTTCCHHHHSEEEEEEEEEEHHHHHHHHHHHHHHHSB-B-HHHHHHHHHH...HHHHHHCCTTCEEEEEEE-B CS
        PALP 200 rslragrrvtvpvsdtiadglavgspselafelldrlvdeivtvsdeealeamrllarregivvepssaaalaal...klreagelkegdrvvviltg 294
                 ++l+ag++v+v v++t+adglav+++++ af++++  vdeivtv++++++ a+ +l + e++vve  +aa+laa+     +++ +lk++ +v+v l+g
  KOO22997.1 216 AALEAGHPVPVAVMPTLADGLAVPQVGAHAFAVARHWVDEIVTVDEAAVALAVLRLLEGEKMVVEGGGAAGLAAMlpgGPLDRLDLKDK-KVLVPLCG 312
                 ***************************************************************************99989999999999.99999998 PP

>> ACT  ACT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.0      0.41   1.8e+03      24      39 ..     122     137 ..     119     152 .. 0.82
   2 !   15.9   0.0   1.8e-06    0.0079       7      46 ..     341     378 ..     335     387 .. 0.81
   3 ?   -1.3   0.2      0.42   1.9e+03      51      64 ..     415     428 ..     413     428 .. 0.83

  Alignments for each domain:
  == domain 1  score: -1.2 bits;  conditional E-value: 0.41
                 TTSEEEEEEEEEESTT CS
         ACT  24 rgiNidsieqrssedk 39 
                 +++ i+ +++++s+ +
  KOO22997.1 122 ANVVIHGAHIGESKQH 137
                 7999*********987 PP

  == domain 2  score: 15.9 bits;  conditional E-value: 1.8e-06
                 EESSTTHHHHHHHHHHHTTSEEEEEEEEEESTTECEEEEE CS
         ACT   7 vpDrPGlLarvfgaladrgiNidsieqrssedkvagivfv 46 
                 v DrPG +a+++ a+a +g ++  i + +   +  + v++
  KOO22997.1 341 VSDRPGGIAELAKAIAGMGASVKDIFHERAWLH--TSVDM 378
                 67***********************99998776..44443 PP

  == domain 3  score: -1.3 bits;  conditional E-value: 0.42
                 EHHHHHHHHHHHHT CS
         ACT  51 deedleevlealkk 64 
                 +++d +evlealk+
  KOO22997.1 415 ETKDEKEVLEALKA 428
                 57899999**9996 PP

>> ACT_4  ACT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.4   0.0   9.3e-06     0.042       7      71 ..     335     402 ..     332     405 .. 0.84

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 9.3e-06
       ACT_4   7 vrleveaedrkglLaditqviseekanivsvnaktrkk....dglaeikitveVkdvehLsrviakLra 71 
                 +rl+v ++dr+g +a+++++i+ ++a+++++  +          ++ ik  +e +  +h +++i+ Lr 
  KOO22997.1 335 IRLTVPVSDRPGGIAELAKAIAGMGASVKDIFHERA-WlhtsVDMVVIKAVLETRGFDHNRQLIRHLRG 402
                 589999***********************9965543.1244444999*****************99997 PP

>> TPMT  Thiopurine S-methyltransferase (TPMT)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   5.7e-05      0.26      37      55 ..     302     320 ..     296     327 .. 0.82

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 5.7e-05
                 --EEEEEET-TT-HHHHHH CS
        TPMT  37 aglrvlvPlCGkaldlvwl 55 
                 + ++vlvPlCG+ +d++ l
  KOO22997.1 302 KDKKVLVPLCGGNIDVTVL 320
                 3459***********9987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (436 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       358  (0.0199677); expected 358.6 (0.02)
Passed bias filter:                      293  (0.0163422); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.52u 0.25s 00:00:00.77 Elapsed: 00:00:00.44
# Mc/sec: 3001.63
//
Query:       KOO22998.1  [L=204]
Description: transcription factor dp-2 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.4e-19   69.2   0.0    4.8e-19   68.2   0.0    1.5  1  E2F_TDP       E2F/DP family winged-helix DNA-binding domain
    1.1e-06   28.6   0.0    1.9e-06   27.9   0.0    1.3  1  DP            Transcription factor DP
  ------ inclusion threshold ------
      0.092   12.3   0.0       0.14   11.7   0.0    1.2  1  Peripla_BP_2  Periplasmic binding protein
        1.8    9.3   6.8       0.14   12.9   1.0    2.1  2  MAGE_N        Melanoma associated antigen family N terminal


Domain annotation for each model (and alignments):
>> E2F_TDP  E2F/DP family winged-helix DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   68.2   0.0   1.1e-22   4.8e-19       3      71 .]      37     117 ..      35     117 .. 0.96

  Alignments for each domain:
  == domain 1  score: 68.2 bits;  conditional E-value: 1.1e-22
     E2F_TDP   3 ksLgvltkkfvellkesakgtlslneaakeLv...............dkkdekvkkRRiYDilNVLealglieKeskneikWig 71 
                  +L++++ k+++ ++    gt+s+ne+a++Lv               +  de++++RR+YD+lNVLea+g++ Ke k++++W+g
  KOO22998.1  37 GTLRAFSLKVCHAVHT--MGTTSYNEVADRLVgemlgferlnrtpaeEGGDERNIRRRVYDALNVLEAVGILAKE-KKTVRWVG 117
                 579***********77..****************************9999*************************.******98 PP

>> DP  Transcription factor DP
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.9   0.0   4.1e-10   1.9e-06       6      48 ..     130     172 ..     126     181 .. 0.89

  Alignments for each domain:
  == domain 1  score: 27.9 bits;  conditional E-value: 4.1e-10
          DP   6 leeekekreerikkkkeqlqeLilqqvalknLvqrNreleekk 48 
                 l++e+ + ++r+++k ++l+ L  qq+a+ +L++rN+++ e  
  KOO22998.1 130 LTQERDEARQRVRDKVAKLKALLGQQIAYHQLISRNKAAVEAA 172
                 899**********************************987754 PP

>> Peripla_BP_2  Periplasmic binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   3.1e-05      0.14      79     148 ..     123     191 ..     115     197 .. 0.90

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 3.1e-05
                   HHHHS-EEE----TTSHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHHTS-TT.-EEEEEEEETTE CS
  Peripla_BP_2  79 lksgiptvivessntgeslkeqiralgellgledeaeklvaeidsklaaaksaidsekpkpvlvfggade 148
                   + sg  ++++e +++ + + + +  l  llg++ ++++l+++ + +++aa +a++s+ p ++lv + + e
    KOO22998.1 123 QVSGLSFLTQERDEARQRVRDKVAKLKALLGQQIAYHQLISRNKAAVEAAVAAAPSA-PGTTLVSMRQTE 191
                   66889999******99*****************************************.888888776655 PP

>> MAGE_N  Melanoma associated antigen family N terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   1.0   3.1e-05      0.14      39      77 ..       3      41 ..       1      63 [. 0.91
   2 ?   -1.3   0.5      0.79   3.5e+03      44      45 ..     181     182 ..     156     204 .] 0.45

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 3.1e-05
      MAGE_N 39 splsedtpesspaagtpsapqspqgapssttaaaavsrt 77
                 p+   tp++s a+g+ ++++++ + pss taa +++r 
  KOO22998.1  3 LPSTATTPQTSDATGAKAKSKKRVREPSSLTAAEGTLRA 41
                577889****************************99875 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 0.79
      MAGE_N  44 dt 45 
                 +t
  KOO22998.1 181 GT 182
                 11 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (204 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       788  (0.0439511); expected 358.6 (0.02)
Passed bias filter:                      553  (0.0308439); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.45u 0.24s 00:00:00.69 Elapsed: 00:00:00.41
# Mc/sec: 1502.10
//
Query:       KOO22999.1  [L=447]
Description: hypothetical protein Ctob_000973 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    4.9e-05   23.1   4.0    4.9e-05   23.1   4.0    3.0  3  PHD            PHD-finger
  ------ inclusion threshold ------
        3.3    6.1   9.8        2.9    6.3   6.5    1.9  2  Terminase_GpA  Phage terminase large subunit (GpA)
          5    7.5   6.2         20    5.6   0.1    2.7  3  zf-C2H2_jaz    Zinc-finger double-stranded RNA-binding


Domain annotation for each model (and alignments):
>> PHD  PHD-finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.1   4.0   8.1e-09   4.9e-05       2      51 ..     247     299 ..     246     300 .. 0.84
   2 ?    1.1   0.3     0.061   3.7e+02      43      51 ..     315     323 ..     303     324 .. 0.72
   3 ?   -1.9   5.0      0.55   3.3e+03       2      21 ..     318     338 ..     308     355 .. 0.61

  Alignments for each domain:
  == domain 1  score: 23.1 bits;  conditional E-value: 8.1e-09
                 BTTTTSTTSTTSCEEEETTTSCEEETTTSSSTHSHHSHHSS....TBSSTTTHT CS
         PHD   2 CavCkkksdeeeelvqCdgCkrwfHqkClkppleseekpeg....ewlCekCke 51 
                 C vC ++   + + + C  C+rwfH  C +++  +++         ++C +C++
  KOO22999.1 247 C-VCAGHLSGNYFALPCAACDRWFHARCERLDYGRDDLVRMrdkrLYMCIQCES 299
                 8.9**988889999**************999877666655456789******97 PP

  == domain 2  score: 1.1 bits;  conditional E-value: 0.061
                 TBSSTTTHT CS
         PHD  43 ewlCekCke 51 
                  w C+ C++
  KOO22999.1 315 VWSCRFCSR 323
                 699999975 PP

  == domain 3  score: -1.9 bits;  conditional E-value: 0.55
                 BTTTTS.TTSTTSCEEEETTT CS
         PHD   2 CavCkk.ksdeeeelvqCdgC 21 
                 C++C++  +de++ +v  ++C
  KOO22999.1 318 CRFCSRaFEDESSATVHGKRC 338
                 555555444444444444444 PP

>> Terminase_GpA  Phage terminase large subunit (GpA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.3   6.5   0.00049       2.9     196     250 ..     257     313 ..     254     323 .. 0.77
   2 ?    1.1   1.3     0.019   1.1e+02     191     211 ..     308     328 ..     300     360 .. 0.67

  Alignments for each domain:
  == domain 1  score: 6.3 bits;  conditional E-value: 0.00049
  Terminase_GpA 196 ryyvpCphCgelqelsferlkwpege...aeekaryvCphcgsl.ieehhkraalaaGr 250
                    ++  pC  C+ ++ ++ erl + +++    ++k  y+C +c+s  ++e+ ++    aGr
     KOO22999.1 257 YFALPCAACDRWFHARCERLDYGRDDlvrMRDKRLYMCIQCESKrLQEQGYHSD--AGR 313
                    7999******************666667799999*******9752455555554..454 PP

  == domain 2  score: 1.1 bits;  conditional E-value: 0.019
  Terminase_GpA 191 esdqrryyvpCphCgelqels 211
                     sd  r+++ C  C   +e +
     KOO22999.1 308 HSDAGRFVWSCRFCSRAFEDE 328
                    79*************999844 PP

>> zf-C2H2_jaz  Zinc-finger double-stranded RNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.6   0.1    0.0034        20       4      12 ..     262     270 ..     260     270 .. 0.90
   2 ?   -3.1   0.4       1.8   1.1e+04       2       8 ..     292     298 ..     292     300 .. 0.82
   3 ?    4.9   0.1    0.0056        33       3      20 ..     317     334 ..     315     334 .. 0.88

  Alignments for each domain:
  == domain 1  score: 5.6 bits;  conditional E-value: 0.0034
                  BTTTTBBBS CS
  zf-C2H2_jaz   4 CvlCdKyFk 12 
                  C +Cd++F+
   KOO22999.1 262 CAACDRWFH 270
                  9*******5 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 1.8
                  CBBTTTT CS
  zf-C2H2_jaz   2 fYCvlCd 8  
                  + C+ C+
   KOO22999.1 292 YMCIQCE 298
                  68**996 PP

  == domain 3  score: 4.9 bits;  conditional E-value: 0.0056
                  BBTTTTBBBSSHHHHHCC CS
  zf-C2H2_jaz   3 YCvlCdKyFksenaldnH 20 
                   C  C++ F++e++   H
   KOO22999.1 317 SCRFCSRAFEDESSATVH 334
                  699*********998877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (447 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       569  (0.0317363); expected 358.6 (0.02)
Passed bias filter:                      315  (0.0175693); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.52u 0.23s 00:00:00.75 Elapsed: 00:00:00.41
# Mc/sec: 3264.44
//
Query:       KOO23000.1  [L=314]
Description: hypothetical protein Ctob_000970 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
     0.0047   17.4   0.9     0.0066   16.9   0.9    1.2  1  Fez1           Fez1
  ------ inclusion threshold ------
      0.045   13.7   6.2      0.082   12.8   6.2    1.5  1  DUF2489        Protein of unknown function (DUF2489)
       0.17   10.9   1.8       0.25   10.4   1.8    1.2  1  Atg14          Vacuolar sorting 38 and autophagy-related subu
        1.8    8.6   9.4          5    7.2   1.8    2.8  2  PepSY_2        Peptidase propeptide and YPEB domain


Domain annotation for each model (and alignments):
>> Fez1  Fez1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   0.9   1.5e-06    0.0066      73     178 ..      52     160 ..      17     163 .. 0.78

  Alignments for each domain:
  == domain 1  score: 16.9 bits;  conditional E-value: 1.5e-06
        Fez1  73 nelqrkkseaellrekvekleeelkelreelselsleeeeaalesdeakaqrqe.......aeeleelkreverlraeLkeerqkkeeqassFeqERrt 164
                 ++      ++ +lre ++ le+ + + r+el+e s + ee     ++a a+r++       +++l++ ++  + l a L+ e+++ e+ ++     R+ 
  KOO23000.1  52 QQALALDRHHRNLREDAKVLEAAMVRKRSELEECSIRCEEI----RDALARREAfladpgpRHALKARREAAAALYATLAAEQDAAEAARQRTSAPRHE 146
                 33334467788999999999999999999999988765554....555555655777788888999999999*************************** PP

        Fez1 165 WqeeKekVirYqkq 178
                 W +e +  +  q q
  KOO23000.1 147 WFDEDDDALDAQPQ 160
                 ****9988876655 PP

>> DUF2489  Protein of unknown function (DUF2489)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   6.2   1.8e-05     0.082      20      72 ..      45     100 ..      31     161 .. 0.86

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 1.8e-05
     DUF2489  20 q...qeeeqeeakqkrrarilesiriiakAmlqeqcelsEgaiRikvLldaldlel 72 
                 +   + ++q+ a +++++++ e+ +++  Am  ++ el E +iR+  + dal   +
  KOO23000.1  45 DlaaRPDQQALALDRHHRNLREDAKVLEAAMVRKRSELEECSIRCEEIRDALARRE 100
                 344556799***************************************99997665 PP

>> Atg14  Vacuolar sorting 38 and autophagy-related subunit 14
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   1.8   5.5e-05      0.25      46     131 ..      52     139 ..      15     160 .. 0.71

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 5.5e-05
       Atg14  46 ekalegkeeaeqledkiknkkakleelksliadlrerlqelkdklsqlkkeiee..kkkklaklsdklkkRrsdleslqneleerrkk 131
                 ++al+  +   +l++++k + a++ +++s+ ++++ r++e++d l ++ + +++   ++ l++++++ +  +++l++ q+  e++r++
  KOO23000.1  52 QQALALDRHHRNLREDAKVLEAAMVRKRSELEECSIRCEEIRDALARREAFLADpgPRHALKARREAAAALYATLAAEQDAAEAARQR 139
                 4555555566778888888888888888888888888888888888888877763346677777777777777766666666666665 PP

>> PepSY_2  Peptidase propeptide and YPEB domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.2   1.8    0.0011         5       2      33 ..     118     151 ..     117     162 .. 0.83
   2 ?    5.0   1.1    0.0053        24       4      43 ..     232     269 ..     229     272 .. 0.86

  Alignments for each domain:
  == domain 1  score: 7.2 bits;  conditional E-value: 0.0011
     PepSY_2   2 aalalalalla..aaAlAgrrdtdspkadwlpre 33 
                 aa+al ++l+a   aA A+r+ t +p+++w +++
  KOO23000.1 118 AAAALYATLAAeqDAAEAARQRTSAPRHEWFDED 151
                 5677777777788888889***********9776 PP

  == domain 2  score: 5.0 bits;  conditional E-value: 0.0053
     PepSY_2   4 lalalallaaaAlAgrrdtdspkadwlpreklvakleaqG 43 
                 ++ a++++aa++ A     ++p+++ +p+++ +a ++++G
  KOO23000.1 232 TVNAATVNAATVNA--ASGRAPRSFSIPASQPMADAAQTG 269
                 56688888988888..899*****************9998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (314 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       930  (0.0518713); expected 358.6 (0.02)
Passed bias filter:                      375  (0.0209158); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.46u 0.22s 00:00:00.68 Elapsed: 00:00:00.36
# Mc/sec: 2579.70
//
Query:       KOO23001.1  [L=354]
Description: hypothetical protein Ctob_000978, partial [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.5e-18   64.5  13.6    0.00011   22.0   0.1    8.7 10  LRR_6     Leucine Rich repeat
    3.5e-06   26.8   0.1        9.1    7.3   0.0    6.1  7  LRR_1     Leucine Rich Repeat
    5.4e-05   23.5   4.7       0.58   10.7   0.0    6.0  7  LRR_4     Leucine Rich repeats (2 copies)


Domain annotation for each model (and alignments):
>> LRR_6  Leucine Rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.5   0.0      0.29   1.8e+03       2      22 ..      21      41 ..      20      43 .. 0.72
   2 !    8.6   0.1   0.00037       2.2       2      17 ..      77      92 ..      76      99 .. 0.83
   3 ?    1.1   0.1     0.091   5.5e+02       5      23 ..     108     126 ..     107     127 .. 0.74
   4 ?   -1.7   0.0      0.73   4.3e+03       5      13 ..     135     143 ..     133     154 .. 0.71
   5 ?    0.9   0.1       0.1   6.2e+02      12      24 .]     170     182 ..     168     182 .. 0.90
   6 !    5.3   0.0     0.004        24       5      24 .]     194     214 ..     193     214 .. 0.88
   7 ?   -2.0   0.0      0.87   5.2e+03       2      11 ..     219     228 ..     218     229 .. 0.85
   8 !   14.4   0.0     5e-06      0.03       2      20 ..     257     275 ..     256     279 .. 0.90
   9 !   22.0   0.1   1.8e-08   0.00011       2      23 ..     285     306 ..     284     307 .. 0.92
  10 !   12.0   0.0   2.8e-05      0.17       2      16 ..     313     327 ..     312     329 .. 0.90

  Alignments for each domain:
  == domain 1  score: -0.5 bits;  conditional E-value: 0.29
       LRR_6  2 nthLteLdLsgNdIgDeGaea 22
                +++L+eLd s+  +g  G+  
  KOO23001.1 21 SRSLEELDASSGALGVIGVLQ 41
                689****97777776666655 PP

  == domain 2  score: 8.6 bits;  conditional E-value: 0.00037
       LRR_6  2 nthLteLdLsgNdIgD 17
                n++L++L L  N+++ 
  KOO23001.1 77 NRTLRTLKLGMNCLDV 92
                9************975 PP

  == domain 3  score: 1.1 bits;  conditional E-value: 0.091
       LRR_6   5 LteLdLsgNdIgDeGaeaL 23 
                 Lt L L +N+  D+Ga aL
  KOO23001.1 108 LTCLTLEHNQTLDSGAAAL 126
                 8999999999556666665 PP

  == domain 4  score: -1.7 bits;  conditional E-value: 0.73
       LRR_6   5 LteLdLsgN 13 
                 L++L++++ 
  KOO23001.1 135 LRTLSVAFT 143
                 899999875 PP

  == domain 5  score: 0.9 bits;  conditional E-value: 0.1
       LRR_6  12 gNdIgDeGaeaLa 24 
                 gN++g +G+ aL+
  KOO23001.1 170 GNGVGPSGVGALS 182
                 79*******9996 PP

  == domain 6  score: 5.3 bits;  conditional E-value: 0.004
       LRR_6   5 LteLdLsgNd.IgDeGaeaLa 24 
                 Lt+L+Ls N+ ++ + + a+a
  KOO23001.1 194 LTALNLSANQrLDVSSVRAIA 214
                 9*********99998888887 PP

  == domain 7  score: -2.0 bits;  conditional E-value: 0.87
       LRR_6   2 nthLteLdLs 11 
                 +t L eL+L+
  KOO23001.1 219 CTRLVELQLA 228
                 899****997 PP

  == domain 8  score: 14.4 bits;  conditional E-value: 5e-06
       LRR_6   2 nthLteLdLsgNdIgDeGa 20 
                 +++L+ LdLs N +gD Ga
  KOO23001.1 257 CPTLERLDLSMNPFGDMGA 275
                 89**************886 PP

  == domain 9  score: 22.0 bits;  conditional E-value: 1.8e-08
       LRR_6   2 nthLteLdLsgNdIgDeGaeaL 23 
                 ++ L+eLdLs++++gD+Ga  L
  KOO23001.1 285 CSRLRELDLSSCEVGDDGADEL 306
                 899***************9876 PP

  == domain 10  score: 12.0 bits;  conditional E-value: 2.8e-05
       LRR_6   2 nthLteLdLsgNdIg 16 
                 nt+L +LdL+gN+I 
  KOO23001.1 313 NTTLATLDLRGNKIH 327
                 9************96 PP

>> LRR_1  Leucine Rich Repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.0         3   1.8e+04       1       7 [.      23      29 ..      23      32 .. 0.79
   2 ?    1.9   0.0     0.091   5.4e+02       2      15 ..      80      97 ..      79     105 .. 0.73
   3 ?   -1.9   0.0       1.6   9.7e+03       2      11 ..     108     117 ..     107     126 .. 0.76
   4 ?   -0.0   0.0      0.38   2.3e+03       2      13 ..     194     205 ..     193     213 .. 0.76
   5 !    5.7   0.0    0.0052        31       2      16 ..     260     274 ..     259     280 .. 0.81
   6 !    7.3   0.0    0.0015       9.1       1      13 [.     287     299 ..     287     310 .. 0.79
   7 ?    2.2   0.0     0.069   4.1e+02       2      12 ..     316     326 ..     315     347 .. 0.82

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 3
       LRR_1  1 nLrhLdL 7 
                +L++Ld 
  KOO23001.1 23 SLEELDA 29
                6999996 PP

  == domain 2  score: 1.9 bits;  conditional E-value: 0.091
       LRR_1  2 LrhLdLsnnpl....lgl 15
                Lr+L L+ n+l     +l
  KOO23001.1 80 LRTLKLGMNCLdvgaARL 97
                9*********95555444 PP

  == domain 3  score: -1.9 bits;  conditional E-value: 1.6
       LRR_1   2 LrhLdLsnnp 11 
                 L+ L L++n+
  KOO23001.1 108 LTCLTLEHNQ 117
                 7789999997 PP

  == domain 4  score: -0.0 bits;  conditional E-value: 0.38
       LRR_1   2 LrhLdLsnnpll 13 
                 L+ L+Ls n+ l
  KOO23001.1 194 LTALNLSANQRL 205
                 788999988864 PP

  == domain 5  score: 5.7 bits;  conditional E-value: 0.0052
       LRR_1   2 LrhLdLsnnpllglp 16 
                 L++LdLs np+++ +
  KOO23001.1 260 LERLDLSMNPFGDMG 274
                 9*********97655 PP

  == domain 6  score: 7.3 bits;  conditional E-value: 0.0015
       LRR_1   1 nLrhLdLsnnpll 13 
                 +Lr+LdLs++  +
  KOO23001.1 287 RLRELDLSSCEVG 299
                 69********865 PP

  == domain 7  score: 2.2 bits;  conditional E-value: 0.069
       LRR_1   2 LrhLdLsnnpl 12 
                 L +LdL++n +
  KOO23001.1 316 LATLDLRGNKI 326
                 668******97 PP

>> LRR_4  Leucine Rich repeats (2 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.0   0.0      0.23   1.4e+03       2      20 ..      23      41 ..      22      49 .. 0.74
   2 ?    0.6   0.1      0.14   8.5e+02      25      36 ..      80      90 ..      66      95 .. 0.64
   3 ?    0.8   0.2      0.12   7.4e+02       3      14 ..      80      91 ..      78     138 .. 0.63
   4 ?    2.6   0.0     0.034   2.1e+02      25      40 ..     194     208 ..     185     232 .. 0.62
   5 !    6.1   0.0    0.0026        15      21      38 ..     256     272 ..     249     279 .. 0.76
   6 !   10.7   0.0   9.7e-05      0.58       1      33 [.     258     296 ..     258     307 .. 0.80
   7 !    8.0   0.1   0.00068       4.1       2      36 ..     287     326 ..     286     329 .. 0.74

  Alignments for each domain:
  == domain 1  score: -0.0 bits;  conditional E-value: 0.23
                S--EEE--SS---E-S-HH CS
       LRR_4  2 nLevLdLsnNqltdiplle 20
                +Le+Ld s+  l  i+ l+
  KOO23001.1 23 SLEELDASSGALGVIGVLQ 41
                7999999954888777765 PP

  == domain 2  score: 0.6 bits;  conditional E-value: 0.14
                --EEE-.-S--- CS
       LRR_4 25 LkeLdLsgNnli 36
                L++L L g+n +
  KOO23001.1 80 LRTLKL-GMNCL 90
                777777.65555 PP

  == domain 3  score: 0.8 bits;  conditional E-value: 0.12
                --EEE--SS--- CS
       LRR_4  3 LevLdLsnNqlt 14
                L++L L+ N+l 
  KOO23001.1 80 LRTLKLGMNCLD 91
                666666655554 PP

  == domain 4  score: 2.6 bits;  conditional E-value: 0.034
                 --EEE-.-S-----GG CS
       LRR_4  25 LkeLdLsgNnlitdld 40 
                 L+ L+Ls N ++ d++
  KOO23001.1 194 LTALNLSANQRL-DVS 208
                 445555555333.333 PP

  == domain 5  score: 6.1 bits;  conditional E-value: 0.0026
                 H-TT--EEE-.-S----- CS
       LRR_4  21 klpnLkeLdLsgNnlitd 38 
                 ++p L+ LdLs N + +d
  KOO23001.1 256 GCPTLERLDLSMN-PFGD 272
                 4999******655.6665 PP

  == domain 6  score: 10.7 bits;  conditional E-value: 9.7e-05
                 SS--EEE--SS---E-S-.......HHH-TT--EEE-.-S CS
       LRR_4   1 pnLevLdLsnNqltdipl.......leklpnLkeLdLsgN 33 
                 p Le LdLs N   d +        +  +  L+eLdLs++
  KOO23001.1 258 PTLERLDLSMNPFGDMGAwglawalP-ECSRLRELDLSSC 296
                 679******99*88888877444433.5999******988 PP

  == domain 7  score: 8.0 bits;  conditional E-value: 0.00068
                 S--EEE--SS---E-S-...HH...H-TT--EEE-.-S--- CS
       LRR_4   2 nLevLdLsnNqltdipl...le...klpnLkeLdLsgNnli 36 
                 +L++LdLs++ + d +    le    ++ L +LdL gN +i
  KOO23001.1 287 RLRELDLSSCEVGDDGAdelLEaldANTTLATLDLRGN-KI 326
                 79*********997555665335534788999999777.55 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (354 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       275  (0.0153383); expected 358.6 (0.02)
Passed bias filter:                      204  (0.0113782); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.46u 0.24s 00:00:00.70 Elapsed: 00:00:00.42
# Mc/sec: 2548.91
//
Query:       KOO23002.1  [L=469]
Description: putative glycosyltransferase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    7.5e-20   71.3   0.0      1e-19   70.9   0.0    1.2  1  Exostosin  Exostosin family


Domain annotation for each model (and alignments):
>> Exostosin  Exostosin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.9   0.0   5.7e-24     1e-19       5     300 .]      95     412 ..      91     412 .. 0.77

  Alignments for each domain:
  == domain 1  score: 70.9 bits;  conditional E-value: 5.7e-24
   Exostosin   5 lkVYvydlpskfnedlleecrelp.....etswysaeqfllesllhsrveeyvrtsdpaeAdlffvpfyaslsenrhllnsalqdrre........... 87 
                    Yvyd+p+ +  +    c             y +e++++++l +s+      t++  e  +f+vp++ s+++  h + ++lq+ +            
  KOO23002.1  95 KLLYVYDIPPSLAGAECSYC---GvgagrADPGYMTEHAAHQALRASS----WTTREAHEGRWFVVPLLYSCASVCHMRLGELQVGKWfrdgraaacat 186
                 567**********9955444...4455776677999999999999999....********************99998777777766658999******* PP

   Exostosin  88 ......lqrellewlksqlpyWnrsgGrdHfivlsrptwafrr.....takdvdwgsamlvnltslfseeqyr...pgkdvvvPypspfhp.eisqwqa 171
                       + r +  wl++q p+W r   + H++v s + +a+r+     +   +    +++ ++ + f    +    p+ dvv+P  s     +i +  a
  KOO23002.1 187 eeagvaYVRRVFGWLSEQ-PAW-RAAAHRHVFVWSQDKGAYRIaehdpALFAELRRGVFV-QVAGAFMPGRPLafePSWDVVIPPQSDRPIvPIPASAA 282
                 ******************.***.68******************44332222222222222.34444444443355577777775444333334444444 PP

   Exostosin 172 aspsnrRktllvFagelrrrsesgkireklleeckgdpdadickgkqctk.grskedylellassrFClvppGds..ptsrrlfdallagCIPViisdq 267
                 +  ++ R+  ++++g+   ++++   r ++++e++  +  +++ ++ +    +++e++ ++l +++FCl   G+s   +s +l   +++gC  ++  d 
  KOO23002.1 283 D--ARARQRTVFWQGAAAYAHSTYPARVAFVREYGAGQWPKVKLRIGQGGsASDRESAARGLTDATFCLFLSGHSpqRWSGSLGHMIASGCLLIFADDV 379
                 4..455666678899888899999**********55554444444444334666666******************666999****************** PP

   Exostosin 268 ielPfedvldwrefsvfvpekdvpelksilrsl 300
                   lP  ++l w+++s+ vpe+ +  l +++++l
  KOO23002.1 380 STLPLGETLPWESMSLQVPEATPAALSRLVEAL 412
                 **********************99999998875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (469 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       464  (0.0258799); expected 358.6 (0.02)
Passed bias filter:                      362  (0.0201908); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.52u 0.26s 00:00:00.78 Elapsed: 00:00:00.45
# Mc/sec: 3155.24
//
Query:       KOO23003.1  [L=860]
Description: receptor protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.5e-09   35.7   3.1      0.055   13.2   0.0    4.8  4  LRR_8      Leucine rich repeat
  ------ inclusion threshold ------
      0.024   15.1   0.6        6.8    7.3   0.0    4.0  5  LRR_4      Leucine Rich repeats (2 copies)
       0.15   11.7   1.1       0.45   10.1   1.1    1.9  1  PhrC_PhrF  Rap-phr extracellular signalling
       0.78   10.5   9.5         27    5.8   0.1    6.3  8  LRR_1      Leucine Rich Repeat


Domain annotation for each model (and alignments):
>> LRR_8  Leucine rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.8   0.2   0.00063       2.8      15      47 ..     464     496 ..     455     510 .. 0.70
   2 !   13.2   0.0   1.2e-05     0.055       3      58 ..     524     580 ..     522     583 .. 0.94
   3 !   10.2   0.0   0.00011      0.49       2      60 ..     596     655 ..     595     656 .. 0.71
   4 ?    1.0   0.3     0.081   3.6e+02      53      61 .]     648     656 ..     645     686 .. 0.63

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 0.00063
                 EE-TTSSTT-TT--EEE--SS---GGGGGGGTT CS
       LRR_8  15 slddeaFkglsnLkvLdLsnNllttlspgafsg 47 
                 +  + +F+ +  Lk L+L++N+++   p ++  
  KOO23003.1 464 GTLPASFSAFDTLKNLYLRENTISGTLPPSIFA 496
                 555788999999999999999999844444433 PP

  == domain 2  score: 13.2 bits;  conditional E-value: 1.2e-05
                 -SEEE-TTS-.-SEE-TTSSTT-TT--EEE--SS---GGGGGGGTT--S-.EEE--S CS
       LRR_8   3 LtsLdLsnNr.ltslddeaFkglsnLkvLdLsnNllttlspgafsgLpsLrsLdLsg 58 
                 Lts++L +N+    l+   F++ + L++Ld s+  l+t  p++++  ++L sL++++
  KOO23003.1 524 LTSISLERNSfTGTLPNCLFTDAPYLQTLDVSYLDLDTTIPNVIQEATQLVSLTMRH 580
                 99********88899999********************99**************988 PP

  == domain 3  score: 10.2 bits;  conditional E-value: 0.00011
                 T-SEEE-TTS-.-SEE-TTSSTT-TT--EEE--SS---G....GGGGGGTT--S-.EEE--SS- CS
       LRR_8   2 nLtsLdLsnNr.ltslddeaFkglsnLkvLdLsnNlltt....lspgafsgLpsLrsLdLsgNr 60 
                 +L+ ++L +N+    ++ ++  g+ +L +L Ls+N  +     + p++  g+   r+L+L++Nr
  KOO23003.1 596 KLQWVSLERNKmSGTVPSDVIGGMGALYELGLSYNDFSGpiptI-PNTSTGF---RMLYLDHNR 655
                 68888888888888888888888888888888888766521103.4555555...888888887 PP

  == domain 4  score: 1.0 bits;  conditional E-value: 0.081
                 EEE--SS-- CS
       LRR_8  53 sLdLsgNrL 61 
                 +L+L++Nr+
  KOO23003.1 648 MLYLDHNRF 656
                 555555543 PP

>> LRR_4  Leucine Rich repeats (2 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.3   0.0    0.0015       6.8       3      33 ..     476     508 ..     474     516 .. 0.83
   2 ?    1.7   0.2     0.085   3.8e+02       3      39 ..     524     559 ..     523     566 .. 0.74
   3 ?    0.5   0.0      0.21   9.3e+02       2      42 ..     596     639 ..     595     641 .. 0.78
   4 ?   -3.5   0.0       3.7   1.7e+04       5      14 ..     648     657 ..     647     666 .. 0.66
   5 ?   -3.2   0.0         3   1.3e+04      28      40 ..     679     687 ..     677     692 .. 0.61

  Alignments for each domain:
  == domain 1  score: 7.3 bits;  conditional E-value: 0.0015
                 --EEE--SS---.E-S-..HHH-TT--EEE-.-S CS
       LRR_4   3 LevLdLsnNqlt.dipl..leklpnLkeLdLsgN 33 
                 L++L+L+ N ++ ++p+  ++    Lk + L  N
  KOO23003.1 476 LKNLYLRENTISgTLPPsiFA-SSELKNVFLGKN 508
                 9****************8777.899999999666 PP

  == domain 2  score: 1.7 bits;  conditional E-value: 0.085
                 --EEE--SS---.E-S-..HHH-TT--EEE-.-S-----G CS
       LRR_4   3 LevLdLsnNqlt.dipl..leklpnLkeLdLsgNnlitdl 39 
                 L++++L  N  t ++p+  +   p L++Ld+s    + dl
  KOO23003.1 524 LTSISLERNSFTgTLPNclFTDAPYLQTLDVSY---L-DL 559
                 788889988999888886555667799999965...3.55 PP

  == domain 3  score: 0.5 bits;  conditional E-value: 0.21
                 S--EEE--SS---.E-S-..HHH-TT--EEE-.-S-----GGGG CS
       LRR_4   2 nLevLdLsnNqlt.dipl..leklpnLkeLdLsgNnlitdldeL 42 
                 +L+ ++L  N+++ ++p+  ++++  L eL Ls N + ++++++
  KOO23003.1 596 KLQWVSLERNKMSgTVPSdvIGGMGALYELGLSYNDFSGPIPTI 639
                 7888999999999888887666899999****999666666655 PP

  == domain 4  score: -3.5 bits;  conditional E-value: 3.7
                 EEE--SS--- CS
       LRR_4   5 vLdLsnNqlt 14 
                  L+L +N+ +
  KOO23003.1 648 MLYLDHNRFS 657
                 5777777755 PP

  == domain 5  score: -3.2 bits;  conditional E-value: 3
                 EE-.-S-----GG CS
       LRR_4  28 LdLsgNnlitdld 40 
                 L+L +N    dl+
  KOO23003.1 679 LYLDHN----DLS 687
                 666666....554 PP

>> PhrC_PhrF  Rap-phr extracellular signalling
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   1.1    0.0001      0.45       1      19 [.       2      20 ..       2      23 .. 0.90

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.0001
   PhrC_PhrF  1 LKSKLlliCLAlaavFvAa 19
                L  KL liCLA aa F Aa
  KOO23003.1  2 LHAKLGLICLATAAGFAAA 20
                668*************998 PP

>> LRR_1  Leucine Rich Repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.0         4   1.8e+04       6      22 ..     456     472 ..     453     473 .. 0.69
   2 ?    1.8   0.0      0.13   5.7e+02       2      20 ..     476     494 ..     475     497 .. 0.85
   3 ?    5.8   0.1    0.0061        27       2      20 ..     524     542 ..     523     543 .. 0.94
   4 ?    1.1   0.0      0.22   9.8e+02       2      21 ..     549     568 ..     548     570 .. 0.85
   5 ?   -2.2   0.0       2.7   1.2e+04       4      18 ..     624     637 ..     622     641 .. 0.67
   6 ?   -1.9   0.0       2.1   9.3e+03       5      13 ..     649     657 ..     647     665 .. 0.77
   7 ?    0.7   0.1      0.28   1.3e+03       4      18 ..     678     692 ..     677     697 .. 0.82
   8 ?   -3.7   0.1         4   1.8e+04       3      14 ..     705     716 ..     704     718 .. 0.76

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 4
       LRR_1   6 dLsnnpllglppnsfqn 22 
                 d  +  l+g +p+sf+ 
  KOO23003.1 456 DFDSLGLTGTLPASFSA 472
                 44555578999999986 PP

  == domain 2  score: 1.8 bits;  conditional E-value: 0.13
       LRR_1   2 LrhLdLsnnpllglppnsf 20 
                 L+ L+L+ n ++g +p+s+
  KOO23003.1 476 LKNLYLRENTISGTLPPSI 494
                 999***9999988888875 PP

  == domain 3  score: 5.8 bits;  conditional E-value: 0.0061
       LRR_1   2 LrhLdLsnnpllglppnsf 20 
                 L+++ L++n+++g +pn++
  KOO23003.1 524 LTSISLERNSFTGTLPNCL 542
                 899**************97 PP

  == domain 4  score: 1.1 bits;  conditional E-value: 0.22
       LRR_1   2 LrhLdLsnnpllglppnsfq 21 
                 L++Ld+s+  l+  +pn +q
  KOO23003.1 549 LQTLDVSYLDLDTTIPNVIQ 568
                 9*******999888888765 PP

  == domain 5  score: -2.2 bits;  conditional E-value: 2.7
       LRR_1   4 hLdLsnnpllglppn 18 
                 +L Ls+n ++g  ++
  KOO23003.1 624 ELGLSYNDFSGP-IP 637
                 677999999544.33 PP

  == domain 6  score: -1.9 bits;  conditional E-value: 2.1
       LRR_1   5 LdLsnnpll 13 
                 L+L +n+++
  KOO23003.1 649 LYLDHNRFS 657
                 99****984 PP

  == domain 7  score: 0.7 bits;  conditional E-value: 0.28
       LRR_1   4 hLdLsnnpllglppn 18 
                 +L+L +n l+g +p 
  KOO23003.1 678 RLYLDHNDLSGPLPT 692
                 69*******887775 PP

  == domain 8  score: -3.7 bits;  conditional E-value: 4
       LRR_1   3 rhLdLsnnpllg 14 
                 ++L +++n++l+
  KOO23003.1 705 KSLAINGNHFLC 716
                 678899999865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (860 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       543  (0.0302861); expected 358.6 (0.02)
Passed bias filter:                      382  (0.0213063); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.65u 0.27s 00:00:00.92 Elapsed: 00:00:00.45
# Mc/sec: 5803.92
//
Query:       KOO23004.1  [L=296]
Description: aldo keto reductase family oxidoreductase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.8e-29  102.3   0.0    1.7e-26   93.1   0.0    2.0  1  Aldo_ket_red  Aldo/keto reductase family
     0.0053   16.3   0.2     0.0082   15.7   0.2    1.3  1  BCLP          Beta-casein like protein


Domain annotation for each model (and alignments):
>> Aldo_ket_red  Aldo/keto reductase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   93.1   0.0   1.9e-30   1.7e-26      29     292 ..      47     288 ..      44     290 .. 0.88

  Alignments for each domain:
  == domain 1  score: 93.1 bits;  conditional E-value: 1.9e-30
                   HTT--EEE--TT-TTTHHHHH...HHHHHHH-TTTGGG-EEEEEE--SSSTTSSSS-HH...HHHHHHHHHHHHHT-S-EEEEEE-S--TTS-..HH CS
  Aldo_ket_red  29 eaGinffDtAevYgkgqseel...lGealkksrkkreeviiatKvdlrdaeiksglske...niresleeslkrLgtdyvDllllHrpdpslp.sie 118
                    aG + fD+A  Ygk  s  l   l+ a++k++ +re+v+i+tK++ + +  +++  k+   + +e++++ l +L+t yvDl+llH p p  + + +
    KOO23004.1  47 AAGGRGFDSAYDYGKQVSGGLqsdLAIAIAKAGMRREDVFITTKIPAGLGVSPEDCLKAtveSTVEEVKRDLTELNTTYVDLILLHAPCPGGSeKNA 143
                   6899*********7766666543467799999*************777777777666666668899999*****************99887663466 PP

                   HHHHHHHHHHHTTSEEEEEEES--HHHHHHHHHTTT--EEEEE-B-BTT-HHHHTTHHHHHHHTT-EEEEBSTTGGGTTGTTTSS---SSSCCC--- CS
  Aldo_ket_red 119 evldaleelvkeGkiraiGvSnfsveqlekakkkkkvkivavqveynllreleeegllelckkkgvpliaysplggGlltgkyqseedkedkeprkd 215
                    +++ lee + +G++r+iGvSn+ v  l ++++++ v ++++q  ++++   ++ +++ +c+ +++   ay +++g  ++                 
    KOO23004.1 144 ILWKGLEEAKAQGLVRSIGVSNYKVPELTALLSTATVVPAVNQCGCSVQ--KHDDETIAFCQSHNITYEAYDIMKGCPFD----------------- 221
                   679**********************************************..9999********************99988................. PP

                   ----TS-HHHHHHHHHHHHHHHHTT--HHHHHHHHHTTSTT-SEEEE--...SSHHHHHHHHGGGG----HHHHHHHHHH CS
  Aldo_ket_red 216 lkrdertsknldaaeelselakehgvslaqlalryalsqpavgivipga...snieqlednldalelklseeevaeldel 292
                                + +++++a+ h+++ aq++lr+al+++ v+ +  g+   + +e +++ ld+++++l++ e+++l+ l
    KOO23004.1 222 -------------DATVKSIAAAHSKTAAQICLRWALQRDIVVATGTGTdptKAVEYAKEDLDVYDFELTPAEMDTLNGL 288
                   .............6789********************77666666666577688999******************99865 PP

>> BCLP  Beta-casein like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.2   9.1e-07    0.0082      83     137 ..     171     225 ..     159     244 .. 0.92

  Alignments for each domain:
  == domain 1  score: 15.7 bits;  conditional E-value: 9.1e-07
        BCLP  83 laallsaacavgLlvavvltiankgrallakCnfteleaklssitneCpFdptRi 137
                 l+alls+a++v  +     ++++++ + +a C++++ + +++ i++ CpFd   +
  KOO23004.1 171 LTALLSTATVVPAVNQCGCSVQKHDDETIAFCQSHNITYEAYDIMKGCPFDDATV 225
                 689***********************************************97655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (296 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       521  (0.0290591); expected 358.6 (0.02)
Passed bias filter:                      433  (0.0241508); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.45u 0.26s 00:00:00.71 Elapsed: 00:00:00.40
# Mc/sec: 2224.82
//
Query:       KOO23005.1  [L=4146]
Description: dynein heavy chain axonemal [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   9.4e-153  507.9   0.0   5.9e-152  505.3   0.0    2.2  2  AAA_6            Hydrolytic ATP binding site of dynein motor 
   4.2e-143  477.2   1.6   4.2e-143  477.2   1.6    2.9  3  DHC_N2           Dynein heavy chain, N-terminal region 2
   1.1e-103  346.7   0.0     3e-103  345.2   0.0    1.8  1  Dynein_C         Dynein heavy chain C-terminal domain
    8.2e-86  286.7   0.5    2.2e-85  285.3   0.5    1.8  1  AAA_9            ATP-binding dynein motor region
    6.8e-80  268.1   0.5      2e-72  243.7   0.0    3.0  3  AAA_8            P-loop containing dynein motor region D4
      7e-72  240.7   0.0      1e-69  233.7   0.0    2.6  2  AAA_7            P-loop containing dynein motor region
    3.7e-53  180.7   9.2      1e-52  179.3   9.2    1.7  1  MT               Microtubule-binding stalk of dynein motor
    6.9e-53  178.8   0.0    1.7e-52  177.6   0.0    1.7  1  AAA_lid_11       Dynein heavy chain AAA lid domain
    2.1e-30  105.4   0.1    9.4e-30  103.4   0.1    2.3  1  Dynein_AAA_lid   Dynein heavy chain AAA lid domain
    7.4e-23   80.6   0.1    4.4e-22   78.2   0.2    2.3  1  AAA_lid_1        AAA+ lid domain
      1e-12   48.2   0.0    2.3e-11   43.8   0.0    3.2  3  Dynein_heavy     Dynein heavy chain region D6 P-loop domain
    3.1e-10   40.2   0.0      0.032   14.2   0.0    5.8  4  AAA_5            AAA domain (dynein-related subfamily)
    0.00014   22.3   0.0        1.3    9.4   0.0    3.9  3  AAA              ATPase family associated with various cellul
    0.00018   21.9   0.0        1.3    9.4   0.0    3.7  2  AAA_16           AAA ATPase domain
     0.0021   18.3   0.4        9.6    6.5   0.0    4.9  4  AAA_22           AAA domain
     0.0099   16.3   0.1        4.4    7.8   0.0    3.6  3  RNA_helicase     RNA helicase
  ------ inclusion threshold ------
      0.013   14.9   3.6      0.032   13.7   3.6    1.5  1  DUF1202          Protein of unknown function (DUF1202)
      0.034   13.7   0.0       0.14   11.7   0.0    2.0  1  NmrA             NmrA-like family
      0.045   14.3   0.0       0.67   10.5   0.0    2.8  2  AAA_18           AAA domain
      0.046   13.4   0.1        1.6    8.4   0.0    2.4  2  Sigma54_activat  Sigma-54 interaction domain
      0.056   13.6   0.0         16    5.6   0.0    3.3  3  AAA_33           AAA domain


Domain annotation for each model (and alignments):
>> AAA_6  Hydrolytic ATP binding site of dynein motor region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  505.3   0.0  6.9e-155  5.9e-152       1     327 []    1513    1839 ..    1513    1839 .. 1.00
   2 ?   -0.7   0.0      0.65   5.6e+02     204     226 ..    2408    2430 ..    2389    2484 .. 0.61

  Alignments for each domain:
  == domain 1  score: 505.3 bits;  conditional E-value: 6.9e-155
       AAA_6    1 YgyeYlgnserLviTpltdrcyltltqAlklklggapaGpagtGKtEtvkdLakalakqvvvfncsdqldykslgkifkGlaqsGaWgCfdeFnrie 97  
                  Yg+eYlgns rLv+T ltdrcy+tl+ A++l+lggap+GpagtGKtEt+kdLakalakq+vvfncsd+ldy +++k+fkG+a +GaW+CfdeFnri+
  KOO23005.1 1513 YGWEYLGNSFRLVVTALTDRCYRTLMGAIQLTLGGAPEGPAGTGKTETTKDLAKALAKQCVVFNCSDGLDYLAMAKFFKGVAAAGAWACFDEFNRID 1609
                  9************************************************************************************************ PP

       AAA_6   98 levLSvvaqqiktiqqalkekkkkfvfegkeiklnksvgifitmnpgyagrteLPdnLkalfRpvammvPdlelIaeimLfseGfkeakelakklvt 194 
                  levLSvvaqq+ tiq+a+++  ++f+feg++++++++ ++fitmnpgyagr+eLPdnLk+lfR+vammvPd+ lI ei+L+s Gf+ a+ l+kk+v+
  KOO23005.1 1610 LEVLSVVAQQVLTIQRAIAAGVQRFIFEGTDLAIDPTNAVFITMNPGYAGRSELPDNLKVLFRTVAMMVPDYGLIGEISLMSFGFTIARPLSKKIVQ 1706
                  ************************************************************************************************* PP

       AAA_6  195 lykllseqlskqdhydfglralksvlkaagelkreepeeseeelllralrdvnlpklvaeDvplfkglisdlFpgvelpesdyeeleeaieevlkek 291 
                  +ykl+seqls+qdhyd+g+ra+ksvl+aag+lkr+ p+ +e +l+lr++rdvnlpk++++Dvplf+g++sdlFpgv+lp  dy++l+ ai +++++k
  KOO23005.1 1707 TYKLCSEQLSSQDHYDYGMRAVKSVLTAAGNLKRALPNDPEPMLVLRSIRDVNLPKFLSHDVPLFNGITSDLFPGVQLPPPDYDMLKGAIFTIIEKK 1803
                  ************************************************************************************************* PP

       AAA_6  292 klqleekfvekviqlyetlkvrhgvmlvGetgsgKt 327 
                  +lq+ ++fv+kv+++ye+  vrhg+m+vG +++gKt
  KOO23005.1 1804 GLQPVDSFVTKVLEVYEMFLVRHGFMVVGLPFAGKT 1839
                  ***********************************8 PP

  == domain 2  score: -0.7 bits;  conditional E-value: 0.65
       AAA_6  204 skqdhydfglralksvlkaagel 226 
                   +++hy f+lr l+ v + +++ 
  KOO23005.1 2408 PSKSHYTFNLRDLTKVFQGMTQG 2430
                  4689**********999866554 PP

>> DHC_N2  Dynein heavy chain, N-terminal region 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.0       3.6     3e+03     195     268 ..     343     408 ..     340     419 .. 0.76
   2 ?   -0.5   0.2      0.61   5.2e+02       2      83 ..     723     807 ..     722     865 .. 0.74
   3 !  477.2   1.6  4.9e-146  4.2e-143       1     393 [.     970    1372 ..     970    1376 .. 0.98

  Alignments for each domain:
  == domain 1  score: -3.0 bits;  conditional E-value: 3.6
                 STT..THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT.THHHHHHTHHHHHHHHHHHHHHHHHHHHHHTT CS
      DHC_N2 195 pyvkpfeeeveewekklsrlqeildewlkvQrkWlyLepifssedirkqlpeeakrFksvdkewkkimkevskd 268
                 +y   f++e    +  ls ++e+lde   +Qr     e+i  +       p   + +++v +++   m++++ d
  KOO23005.1 343 RYHL-FATEQLGVQVSLSDVSEVLDEARLMQRVPGCDESIWAT-------PAMRSSWQQVASDYTGAMRRAHTD 408
                 5553.78888888999999999999999999988888888844.......777777778888888888777765 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 0.61
                 XXXXXXXXXXXXXXXXXXXXXXXXXXX.....XXXXXXXXXXXXXXXXXXXXXXXXXXXX...XXXXXXXXXXXXXXXXXXXXXX CS
      DHC_N2   2 eeikkelellkklwdlvsewqekleewkktpfkeldveeleeevkellkklkklpkalke...wevakelkekieefkevlplie 83 
                 e+ik++   l++  +l+++w+++++  ++ ++ e++++ l   ++el++ l + ++a+       v++el++k ++++   ++i 
  KOO23005.1 723 ETIKAKKCTLEQYHELINKWNSTVSLVMEATVPEVNCRLLLISCTELKQGLATKAEAIARgvsGLVVEELEKKSKDISAAYSVIY 807
                 6777888889999999999999999999999999999999999988888775433333334556677777777777777666553 PP

  == domain 3  score: 477.2 bits;  conditional E-value: 4.9e-146
                  XXXXXXXXXXXXXXXXXXXXXXXXXXXX.....XXXXXXXXXXXXXXXXXXXXXXXXXXXX....XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
      DHC_N2    1 leeikkelellkklwdlvsewqekleewkktpfkeldveeleeevkellkklkklpkalke....wevakelkekieefkevlplieelrnpalrer 93  
                  l+e+ k le++++lw+++ ++q+++  w ++pf+el +e++e++v ++++ l+kl k+l       +v++++keki++fk++lpli ++ np++r+r
  KOO23005.1  970 LNELNKALEPYNTLWTTAVNFQRAYPLWLEGPFMELSPEQVEKDVGDWWRLLYKLGKSLVGlpgpLKVVNYVKEKIDDFKQHLPLIGAMLNPGMRDR 1066
                  68999****************************************************99889999******************************** PP

                  XXXXXXXXX..XXXXXXXX.XXXXXXXXXXX..XXXXXXXXXXXXXX-HHHHHHHHHHHHHHTS---EEEE-SSS.TEEE..THHHHHHHHHHHHHH CS
      DHC_N2   94 Hwkelsellgvikdpdseesltlgdllelgl..leeeieeisekAtkEaslekalkkieeewkelefelteykdsgvfilkgvdeiielledhivkl 188 
                  Hwk+l e++g  k ++++e  tl+ +le +   ++ +i+e s++A+kE+slekal+k+ +ew+ ++f+++ey+d+g++il+++dei+++ +dh+vk+
  KOO23005.1 1067 HWKQLAEQVG--KPIQPNEMSTLALILEQKTgdYIAQIQEMSDAASKEFSLEKALDKMLNEWRPIQFDCMEYRDTGTYILRALDEIQSMFDDHVVKT 1161
                  *********8..557788889**********999*************************************************************** PP

                  HHTCSSSTT..THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT.THHHHHHTHHHHHHHHHHHHHHHHHHHHHHTTSGGGG...STTHHHHHH CS
      DHC_N2  189 qsmksspyvkpfeeeveewekklsrlqeildewlkvQrkWlyLepifssedirkqlpeeakrFksvdkewkkimkevskdpnvleatskpgllekle 285 
                  q+m++sp+vkpfe+++++we+kl  +qei+dewlk+Q+ WlyLepifssedi++q+p+eakrF +vd+ w+k+m  ++++pnvl at+++g+l + +
  KOO23005.1 1162 QAMRGSPFVKPFENRCRDWEAKLISMQEIIDEWLKCQSVWLYLEPIFSSEDIMRQMPQEAKRFTQVDRLWRKVMAATEAKPNVLLATATEGMLASWQ 1258
                  ************************************************************************************************* PP

                  HHHHHHHHHHHHHHHHHHHHHHHSTTHHHH-HHHHHHHHHTTTTSGGGHHHHHHHHSSEEEESE.....EEEEEETTS-EEEEE........E.EEE CS
      DHC_N2  286 elneqlekiqksLneyLekkRlafpRFyFlsddeLleilsqskdpsavqphlkkcFegiaslefeekkeitgmiskegEkvelse......argnve 376 
                  e+n +le iqk+Ln+yLe+kRl+f R++Fls+deLl+ils++kdp++vqphl kcFegi++++f++k  i+gmis+egEkv++++      a+g+ve
  KOO23005.1 1259 EANRLLELIQKGLNDYLEAKRLSFARLFFLSNDELLQILSETKDPTRVQPHLGKCFEGITKVDFDDKLIIHGMISAEGEKVPFKQtldpnaANGMVE 1355
                  ***********************************************************************************989999******** PP

                  HHHHHHHHHHHHHHHHH CS
      DHC_N2  377 eWLneleeemkktlkel 393 
                  +WL ++e++mk+++ ++
  KOO23005.1 1356 KWLLQVESAMKENVSHQ 1372
                  *************9987 PP

>> Dynein_C  Dynein heavy chain C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  345.2   0.0  3.6e-106    3e-103       2     306 ..    3842    4141 ..    3841    4142 .. 0.93

  Alignments for each domain:
  == domain 1  score: 345.2 bits;  conditional E-value: 3.6e-106
                  HHHHHHHHHHHHCCCTTT-------..CCH--------------..----...........-HHHHHHHHHHHHHHHHHHHHHHHHHHHHC------ CS
    Dynein_C    2 keteellstllslqpressssgsggssreekvlelaadileklpelfdleeaekk.pteyeeplntvllqElerfnkLleeirrsLkelqkaikGev 97  
                  ket+el++++l +q++     g++g+ r  ++ ++a+di +klp++fdl++a+   p+ey +++ntvl qEl rfn+L+e++r+sL++l+kaikG+v
  KOO23005.1 3842 KETRELFTAILLTQSTVG---GGAGRRRRTMLAAIAEDISSKLPADFDLDAAKALyPVEYLQSMNTVLHQELIRFNRLTEIVRSSLNNLKKAIKGLV 3935
                  79*********9988864...446777889***************9****755557***************************************** PP

                  ---HHHHHHHHHHHHTS--GGG.-----SS--HHHHHHHHHHHHHHHHHHH---.....B-GGGSS-HHHHHHHHHHHHHHHTT-----EE--EE-- CS
    Dynein_C   98 vmseeleelansllngkvPesWakksypslkplgsWvrdLleRvkqlqkwleeegkPkvfwLsgfffPqaFLtavlqnyarknkipideltfefevt 194 
                  vm ++le++an+l++g  P++W+k+sypslkpl+ +v+d+++R+k++ +w+ ++g P+ fw+sgfff+qaFLt+  qn+ark+++pid++ f f+++
  KOO23005.1 3936 VMDANLEAVANALMTGARPAMWMKRSYPSLKPLAGYVSDMMRRLKFFADWI-KSGIPADFWISGFFFTQAFLTGASQNFARKHTLPIDQIDFAFSML 4031
                  ***************************************************.6689***************************************** PP

                  -.............-EEE-SEEEESSEE..ETTCEE-SS...SEEEES-EEEE-E----TS.....EEEEEESSTT--SE..........EEEEEE. CS
    Dynein_C  195 kkekeeeaeeepedGvyihGLfleGarwdkkegvLaesepkelfselPvihlkpveakkkekkkkkyecPvYktseRrgvlstt.hstnfvfsvdLp 290 
                  +  k   ++ +pedGv + G++leGar++ +++vL+e+epk+lf+e+P+++++p++ +   ++ k y+cP+Yk s+Rrgvl tt hs+nfv+ ++Lp
  KOO23005.1 4032 TI-K-VGESPPPEDGVHVFGMYLEGARYHAETKVLQECEPKVLFTEIPMMWFRPMQVDAI-DHGKYYNCPLYKESARRGVLATTgHSSNFVMMLKLP 4125
                  63.3.33468999*****************************************987777.45445******************************* PP

                  ....-BHHHTTT-EEE CS
    Dynein_C  291 tkkpeehwilrgvall 306 
                  ++ +e+hw++rgva l
  KOO23005.1 4126 SDVSENHWVKRGVAGL 4141
                  **************87 PP

>> AAA_9  ATP-binding dynein motor region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  285.3   0.5   2.6e-88   2.2e-85       1     220 []    3129    3350 ..    3129    3350 .. 0.98

  Alignments for each domain:
  == domain 1  score: 285.3 bits;  conditional E-value: 2.6e-88
                  .HHH.HT--STHHHHHHHHHHH..SSEEEEESSSTTHHHHHHH.......HEESTTSTTHHHHHHHHHHTTSEEEESTT.SSHHSTTHHHHTTCCEE CS
       AAA_9    1 reWnlqgLPsDelsieNaiivtkserwPlliDPqgqankwiknk.ekeklkviklsdkkflktLenairfGkplliedvgeeldpiLepvLekeiik 96  
                  r+Wn++gLP+D++s++N+ii+ +++rwPl+iDPq+qankw+k++ ++++l ++klsd +f + Lena++fG+p l+e+v eeldp+LepvL k+++k
  KOO23005.1 3129 RQWNIDGLPKDSFSTDNGIITDSARRWPLMIDPQMQANKWVKKMsKSSNLVTFKLSDGDFARALENALNFGNPTLLENVLEELDPVLEPVLLKQVFK 3225
                  69******************************************88889************************************************ PP

                  ...CEEEESSSE.EE--SSCEEEEEESSTTSHHHHHHHHHSEEEE---SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
       AAA_9   97 kg.rkliklgdkeieysenFrLylttklsnphyspeiaakvtlinFtvteeGLedqlLaevvkkerpeleekkeeliqeeaenkkqlkeledklLee 192 
                  +g     klgd+ +ey++nF++y ttkl+nphy pe+++kvtl+nF++t+eGLedq+L++vv+kerpelee+k++l+ e a+nk+ lke+edk+L++
  KOO23005.1 3226 SGgVLSSKLGDSVVEYNKNFKFYTTTKLRNPHYLPEVSVKVTLLNFMITPEGLEDQMLGIVVAKERPELEEEKTKLVLEAAQNKRVLKEVEDKILHT 3322
                  855999******************************************************************************************* PP

                  HHHSSSSSSTHHHHHHHHHHHHHHHHHH CS
       AAA_9  193 LseaegniLedeelietLeksKktaeei 220 
                  Ls++egniL+d + ie L ++K  +++i
  KOO23005.1 3323 LSSSEGNILDDASAIEILGDAKVISDQI 3350
                  **********************999876 PP

>> AAA_8  P-loop containing dynein motor region D4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.1         2   1.7e+03     194     258 ..     522     585 ..     513     586 .. 0.76
   2 !   22.9   0.0   5.4e-08   4.6e-05       1      29 [.    2510    2538 ..    2510    2540 .. 0.96
   3 !  243.7   0.0   2.3e-75     2e-72      56     260 .]    2538    2742 ..    2537    2742 .. 0.97

  Alignments for each domain:
  == domain 1  score: -1.9 bits;  conditional E-value: 2
       AAA_8 194 aLleVaekvleeeeeieeelkesivkvlvevhssveelsekfleelkrkiyvtpksylellktyk 258
                 a ++V ++ l+  +   e + +  +  ++ v    ++ls  ++ el+  +  +  +yl+ll++y 
  KOO23005.1 522 AVEAVTQQELSA-IPEMERTMDLATYEASRVPRILRQLSLLMQDELQSLVLSSMGAYLQLLQMYA 585
                 667777777766.4444455555556677788888999999**********************96 PP

  == domain 2  score: 22.9 bits;  conditional E-value: 5.4e-08
       AAA_8    1 ldLvlfedaiehlarilRvlrqprghaLl 29  
                  +dLvlf  a eh++rilR+++qp g++L 
  KOO23005.1 2510 MDLVLFPFAAEHVCRILRIVKQPFGNVLS 2538
                  99*************************97 PP

  == domain 3  score: 243.7 bits;  conditional E-value: 2.3e-75
       AAA_8   56 evtkkykekefredlkkllkkagikqkevvfllsdnqiieesfledinnlLntGevpnLfskeekeeiieelrkeakkq.gvedskesllnffikrv 151 
                  ++tk+y++  +redlkk+l+ ag k k++vfl++d+q+++e+++edinn+LntGevp+Lf  +e ++i+e+l+ +ak+   ++ ++ s+++ff++++
  KOO23005.1 2538 SLTKSYDMIAWREDLKKVLRGAGEKLKPTVFLFTDTQVKDEAMVEDINNILNTGEVPQLFPGDEVSQICETLQPKAKEIgMTDFTPGSMMRFFVQNC 2634
                  689************************************************************************99994455689*********** PP

       AAA_8  152 renLhivlcmspvgeafrsrlrkfpsLvncttidwfqeWPeeaLleVaekvleeeeeieeelkesivkvlvevhssveelsekfleelkrkiyvtpk 248 
                  r  Lh++lcmsp+g++fr+rlrkfpsLvncttidwf++WP++aLl Va+++l++ +++e+++++++ +++ ++++sv++ls k+l+elkr++yvtp+
  KOO23005.1 2635 RGLLHMALCMSPIGDSFRTRLRKFPSLVNCTTIDWFTAWPKDALLTVAQSFLQD-IKMEDNVRKAVQEMCCSFQESVADLSYKYLRELKRNNYVTPT 2730
                  ******************************************************.****************************************** PP

       AAA_8  249 sylellktykkl 260 
                  sylell  +k l
  KOO23005.1 2731 SYLELLASFKAL 2742
                  *********986 PP

>> AAA_7  P-loop containing dynein motor region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.1   0.0     0.034        29      40      63 ..    1551    1573 ..    1530    1580 .. 0.87
   2 !  233.7   0.0   1.2e-72     1e-69       1     179 [.    2165    2354 ..    2165    2356 .. 0.93

  Alignments for each domain:
  == domain 1  score: 4.1 bits;  conditional E-value: 0.034
       AAA_7   40 GptGtGKtviikdllkkldkekyl 63  
                  Gp+GtGKt ++kdl k+l k+ ++
  KOO23005.1 1551 GPAGTGKTETTKDLAKALAKQ-CV 1573
                  9****************9954.33 PP

  == domain 2  score: 233.7 bits;  conditional E-value: 1.2e-72
       AAA_7    1 feideeakfseilVptvdtvrysyllelllknkkpvllvGptGtGKtviikd.llkkldkek..........ylsltinfsaqtsanqlqdiieskl 86  
                  +++++ akf +i+V t+d+v+ sy+++++++++ pvll G+tGtGK+v+++d +l+ +++e           y+ ++i+fsaqts + +q++i+++l
  KOO23005.1 2165 YSVPKGAKFGDIFVTTIDSVQASYVVDTCITHGIPVLLAGNTGTGKSVLVRDrILNGINSEAaqaakgikdvYNNIFISFSAQTSQRATQNLIDNQL 2261
                  568999************************************************9998865422222222338899********************* PP

       AAA_7   87 ekrrkgvygPpggkklvvFvDDlnmpakekygaqppiellRqlldyggwYdrkklefkeikdvqlvaamgppgggrneitpRllrhfnvlait 179 
                  +krrkgv+gPp gkk v+FvDDlnmp+ ++yg+qpp+e+lRq++d++gwYd+k+++f+e++d+q+vaamgppgggrn++tpR++rhfn++  t
  KOO23005.1 2262 DKRRKGVFGPPFGKKTVIFVDDLNMPMLQTYGDQPPVEILRQWMDHNGWYDLKDCTFRELVDIQFVAAMGPPGGGRNPVTPRYIRHFNLMWAT 2354
                  ****************************************************************************************99766 PP

>> MT  Microtubule-binding stalk of dynein motor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  179.3   9.2   1.2e-55     1e-52       2     340 ..    2756    3101 ..    2755    3103 .. 0.93

  Alignments for each domain:
  == domain 1  score: 179.3 bits;  conditional E-value: 1.2e-55
          MT    2 rlengllklqstaaqvddlkaklaaqevelkqknedadkliqvvgvetekvskekaiadeeekkvavinkevkkkqkdceedlakaepallaaqeal 98  
                  r + gl kl  taa v  ++  l a + +l    +dad l+  +  +++  +k k +  +++   +v+  + +  + dce  la a pal aa +al
  KOO23005.1 2756 RYDVGLQKLSETAASVAGMQQELQALQPQLVVARKDADALMIKIDADSKEAAKVKEVVSKDKAAAEVVAANASAIKADCEAGLAEALPALDAAVKAL 2852
                  7789********************************************************************************************* PP

          MT   99 ntlnktnltelksfgsppdavvnvaaavmv........llaprgkvpkdrswkaakivmakvdafldslinfdkenihenclkaike.ylndpefep 186 
                   tl+k+++ e+k +  pp  vv    av +        + ap+gk   d  w  ak +m+    fldsl+ +dk+ni+   +k i+e y+ dp f p
  KOO23005.1 2853 ATLKKADIDEVKGMKVPPAGVVLTMEAVCItkeikpekVPAPDGKGKVDSFWGPAKTMMQDT-KFLDSLVSYDKDNIDVVIMKKIREkYMPDPGFVP 2948
                  *********************999999998333333333599999999********999875.7********************99659******** PP

          MT  187 efikskslaaaglcswvinivrfyevycdvepkrqalekanaelaaaqeklaaikakiaelnanlaeltaafekatadklkcqqeaeatartislan 283 
                  e++k  s+aa glc wv  +  +  v  d++pkr  l  a+ae a+    la   a + e++++la l a+fe +ta+k   + ++   a  +  a+
  KOO23005.1 2949 EIVKKASTAAFGLCCWVRAMETYDRVAKDIAPKRAKLAGAEAEYAEVSTLLASKMAALKEVEDKLALLQATFEETTAKKESLEAQSIDCANKLERAE 3045
                  ******************************************************************************98887666667778999** PP

          MT  284 rlvgglasenvrwaeavenfksqektlcgdvllitafvsyvgfftkkyrqelldrlw 340 
                  +l+ggl  e+ rw+ea +++      ++gdvl+ +  vsy+g f   +r +l+   w
  KOO23005.1 3046 KLIGGLGGEKDRWTEASRKLGVTYTNITGDVLIGSGVVSYMGPFVATFR-DLQISAW 3101
                  **********************************************998.4665556 PP

>> AAA_lid_11  Dynein heavy chain AAA lid domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  177.6   0.0   1.9e-55   1.7e-52       1     164 []    3681    3835 ..    3681    3835 .. 0.95

  Alignments for each domain:
  == domain 1  score: 177.6 bits;  conditional E-value: 1.9e-55
                  HHHHHHHHCT-HHHHT..............HHHHHHHHHHHHHHHHHGGGGTTTS-SS-----HHHHHHHHHHHHHHHHHCSSGGS-HHHHHHHHHH CS
  AAA_lid_11    1 kanllraysnesekideeffee....keeefkkllfsLcffHavvqeRrkFgplGwnipYeFnesdleisvevlkmyldeyeekevpwealkylige 93  
                  +anll ++ ++++ +d +ffe     +++ +k ll +LcffHav+qeRrk+gp+GwnipYeFn+sdl+i+v++l+ +l++ye  ++p  al+y++ge
  KOO23005.1 3681 RANLLGSFIQDPI-SDPSFFEGvggpNAHGWKPLLLGLCFFHAVIQERRKYGPIGWNIPYEFNTSDLRICVRQLRSFLESYE--SMPLAALRYTTGE 3774
                  79******99885.7889999666677888****************************************************..************* PP

                  TTTSTT--SHHHHHHHHHHHHHHSSGGGGSTT..-T...E---SSHHHHHHHHCTS-SS--CCCCTS-TTH CS
  AAA_lid_11   94 inYGGrvtDdwDrrllktyleeffseevleeeyksgeykipeeksleeyleyieslpladspevfglhena 164 
                  +nYGGrvtDd Drr+l+++l +f+++++++          p+++++eey++++++lp+  spevfglh+na
  KOO23005.1 3775 CNYGGRVTDDKDRRCLNALLLNFYNDDAIS----------PKAETHEEYMAALRALPQFPSPEVFGLHPNA 3835
                  *****************************3..........88899*************************8 PP

>> Dynein_AAA_lid  Dynein heavy chain AAA lid domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  103.4   0.1   1.1e-32   9.4e-30       2     128 ..    2012    2159 ..    2011    2160 .. 0.87

  Alignments for each domain:
  == domain 1  score: 103.4 bits;  conditional E-value: 1.1e-32
  Dynein_AAA_lid    2 eelfeklvepclefvrkkckeivpvtdlnlvqslcrllealldefeekeeesadeeleeeeleevleklflfalvWSiGatldedsrekfdef 94  
                      + lf+++++p+l+++rk+c+ +vp++d+ l+  ++r +ea+ld + +  e+ ++ + ++++ +e+l+ lf+fal+W++Gat+d  srekfd f
      KOO23005.1 2012 KVLFDWFLDPILWYLRKDCRSPVPTMDIMLAVAVMRFIEAHLDIWIDVPEQ-PSRAPDSKKGTEILQGLFFFALIWGVGATVDAPSREKFDFF 2103
                      679*******************************************99876.7888888999******************************* PP

  Dynein_AAA_lid   95 lrellee.......alklp.................peegtvyDyffdke.tgkWkpWe 128 
                      l++l+++       +   p                  ++gtv+D++fd++ +  W+ W+
      KOO23005.1 2104 LKQLIKKevpeilsT---PgaaqpifadvkltkappVDKGTVFDCCFDQTrSWAWIDWT 2159
                      ****99656665550...1555555555556666669*************7889***98 PP

>> AAA_lid_1  AAA+ lid domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   78.2   0.2   5.2e-25   4.4e-22       1      91 [.    2389    2479 ..    2389    2485 .. 0.95

  Alignments for each domain:
  == domain 1  score: 78.2 bits;  conditional E-value: 5.2e-25
   AAA_lid_1    1 lvaaalalhkkiaatflptaikfhyvfnlrdlsnifqgllfssaevlkapldlirlylheservygdkmveekdlellekvtlevakkffd 91  
                  +v+a++++ + ia+ +lpt  k hy fnlrdl+ +fqg+   s++ +   +dl+rl+ he++rv+ d++v++kd+  ++k+    +  +f+
  KOO23005.1 2389 VVQATINIFNTIAKELLPTPSKSHYTFNLRDLTKVFQGMTQGSPKTVLEKVDLLRLWAHETKRVFSDRLVDKKDMTWFHKLLCTQLEEVFK 2479
                  699******************************************************************************9888887775 PP

>> Dynein_heavy  Dynein heavy chain region D6 P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.4   0.0       1.4   1.2e+03      15     112 ..    3164    3267 ..    3157    3275 .. 0.56
   2 !   43.8   0.0   2.7e-14   2.3e-11       2      57 ..    3609    3667 ..    3608    3674 .. 0.93
   3 ?   -2.3   0.0       5.4   4.6e+03     107     119 .]    3668    3680 ..    3668    3680 .. 0.88

  Alignments for each domain:
  == domain 1  score: -0.4 bits;  conditional E-value: 1.4
                    -THHHHHHHHHHTT--EEEEETTSHHHHHHHHHHHHHHHHT-EEEEE-GGG-CCC.HH.HHHHH.....................HHTT-EEEEE CS
  Dynein_heavy   15 dptesleklakklkklvksvslGqgqeeeaekalekaakegsWvlLqNchlapsw.lk.eLekileel..............eeklhssfRlwlt 93  
                    ++ ++++k++k+ +  + ++ l +g      +ale+a + g+  lL+N+   ++  l+  L k    +                + +++f+ + t
    KOO23005.1 3164 QANKWVKKMSKSSN--LVTFKLSDG---DFARALENALNFGNPTLLENVLEELDPvLEpVLLKQ---VfksggvlssklgdsVVEYNKNFKFYTT 3250
                    33344444444222..223333333...457889999999999999998654221122233333...1222455555566554556779999998 PP

                    EES-TTS-HHHHHTSEEEE CS
  Dynein_heavy   94 sepspkfPislLqssikvt 112 
                    ++  +  P  l + s+kvt
    KOO23005.1 3251 TKLRN--PHYLPEVSVKVT 3267
                    88887..666666777766 PP

  == domain 2  score: 43.8 bits;  conditional E-value: 2.7e-14
                    TTS-EEEEE-TT--THHHHHHHHHHT...T--EEEEETTSHHHHHHHHHHHHHHHHT-E CS
  Dynein_heavy    2 pttPvlfilspgadptesleklakkl...kklvksvslGqgqeeeaekalekaakegsW 57  
                    + +P++filspg dp+++l k+++     +k ++s+slGqgq++ a+k++ +a+++gsW
    KOO23005.1 3609 CMVPLIFILSPGQDPMSQLLKFGDARgfgGKRTNSISLGQGQGPIAKKLIMDAQSNGSW 3667
                    679*********************888996677************************** PP

  == domain 3  score: -2.3 bits;  conditional E-value: 5.4
                    TSEEEEE---SSH CS
  Dynein_heavy  107 ssikvtnepPkgl 119 
                    +++k+tnepP gl
    KOO23005.1 3668 NGVKMTNEPPLGL 3680
                    689*******886 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.1   0.0     0.025        21      49     107 ..    1235    1293 ..    1213    1312 .. 0.84
   2 !   14.2   0.0   3.8e-05     0.032       6     138 .]    1551    1671 ..    1550    1671 .. 0.88
   3 ?    2.1   0.0      0.21   1.8e+02      34     137 ..    1877    1975 ..    1829    1976 .. 0.81
   4 !   10.0   0.0   0.00075      0.64       1     136 [.    2199    2346 ..    2199    2348 .. 0.68

  Alignments for each domain:
  == domain 1  score: 5.1 bits;  conditional E-value: 0.025
                  ........--------G-SEEEEESGGG--HHHHHHHHHHHHSSEEE..-SSSEEE--- CS
       AAA_5   49 ngttslvdsplvraaregeilvlDEveraesevlnsLlslleerrllleeggelvkakn 107 
                  +  t+ ++++l   a+eg ++   E +r+   +++ L+ +le +rl+++ +++l + + 
  KOO23005.1 1235 MAATEAKPNVLLATATEGMLASWQEANRLLELIQKGLNDYLEAKRLSFARLFFLSNDEL 1293
                  5789999****************************************999999887765 PP

  == domain 2  score: 14.2 bits;  conditional E-value: 3.8e-05
                  --SSSSHHHHHHHGGGGBS--EEEEE--TT--HHHHH--B--.........--------G-SEEEEESGGG--HHHHHHHHHHHHSSEEE..-SSSE CS
       AAA_5    6 GppGtgKselaerlaaalnreveyvqltrdtteedlkgrreikngttslvdsplvraaregeilvlDEveraesevlnsLlslleerrllleeggel 102 
                  Gp GtgK+e ++ la+al ++ ++ ++++++ +  +    +          +++      g+ +++DE++r++ evl+++ +   + ++ ++ g ++
  KOO23005.1 1551 GPAGTGKTETTKDLAKALAKQCVVFNCSDGLDYLAMAKFFK----------GVAA----AGAWACFDEFNRIDLEVLSVVAQQVLTIQRAIAAGVQR 1633
                  9****************************999988887777..........5555....8999*****************999999999999**999 PP

                  EE---........-EEEEEESS--.-TT-TTHHHHTT- CS
       AAA_5  103 vkakndd.ller.frviatanpldrslnelspalrsRf 138 
                    ++ +d ++ +   v+ t+np + +++el  +l+ +f
  KOO23005.1 1634 FIFEGTDlAIDPtNAVFITMNPGYAGRSELPDNLKVLF 1671
                  9999999766666778899****999999999887655 PP

  == domain 3  score: 2.1 bits;  conditional E-value: 0.21
                  TT--HHHHH--B--.........--------.........G-SEEEEESGGG--HHHHHHHHHHHHSSEEE..-SSSEEE---......-EEEEEES CS
       AAA_5   34 rdtteedlkgrreikngttslvdsplvraar.........egeilvlDEveraesevlnsLlslleerrllleeggelvkaknddllerfrviatan 121 
                  ++ ++  l g+ +  +   +++d++l    r         + ++++++ v+     +++ ++++l++++ l   +ge +  ++      +++i++  
  KOO23005.1 1877 KSVPAGRLYGEFD--PVSHEWTDGILAVIYRtcaqdttgvRQWMVFDGPVD---AVWIENMNTVLDDNKKLCLMSGEIIAMSRI-----MNLIFEPM 1963
                  5555556666666..588899999999888899999999999999999999...9*************9999999998877664.....66776544 PP

                  S--.-TT-TTHHHHTT CS
       AAA_5  122 pldrslnelspalrsR 137 
                  +    l+ +spa++sR
  KOO23005.1 1964 D----LAVASPATVSR 1975
                  4....44777777777 PP

  == domain 4  score: 10.0 bits;  conditional E-value: 0.00075
                  EEEEE--SSSSHHHHHH.HGGGGBS--EEEEE--TT--HHHHH--B--............--------........G-SEEEEESGGG--HHHHHHH CS
       AAA_5    1 dvlLvGppGtgKselae.rlaaalnreveyvqltrdtteedlkgrreik...ngttslvdsplvraar........egeilvlDEveraesevlnsL 85  
                  +vlL G++GtgKs l++ r++  +n+e    +   +  +++++ + + +     t+ l d+ l +  +        ++ ++++D++++   ++ +  
  KOO23005.1 2199 PVLLAGNTGTGKSVLVRdRILNGINSEAAQAAKGIKDVYNNIFISFSAQtsqRATQNLIDNQLDKRRKgvfgppfgKKTVIFVDDLNMPMLQTYGDQ 2295
                  59*************9745666664443333333333356666666654444333333333333333355555555*************9***9999 PP

                  HHHHHSSEEE..-SSSEEE---.......-EEEEEESS--.-TT-TTHHHHT CS
       AAA_5   86 lslleerrllleeggelvkakndd.llerfrviatanpldrslnelspalrs 136 
                   ++ e  r +++ +g++  ++ ++  l +++++a++ p+ +++n+++p+ ++
  KOO23005.1 2296 -PPVEILRQWMDHNGWYDLKDCTFrELVDIQFVAAMGPPGGGRNPVTPRYIR 2346
                  .6666666666888888888877666666**********9999999988766 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.4   0.0    0.0016       1.3       5      35 ..    1551    1581 ..    1550    1606 .. 0.89
   2 ?   -0.6   0.0       1.9   1.6e+03       2      23 ..    1829    1850 ..    1828    1868 .. 0.82
   3 !    7.5   0.0    0.0062       5.3       1      68 [.    2200    2285 ..    2200    2308 .. 0.68

  Alignments for each domain:
  == domain 1  score: 9.4 bits;  conditional E-value: 0.0016
                  SSTTSSHHHHHHHHHHHHTHEEEEEETTTCS CS
         AAA    5 GppGtGKTllakavakelgvefleisgsell 35  
                  Gp GtGKT + k +ak l  +++ +++s+ l
  KOO23005.1 1551 GPAGTGKTETTKDLAKALAKQCVVFNCSDGL 1581
                  9*******************9*999999866 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 1.9
                  EEESSTTSSHHHHHHHHHHHHT CS
         AAA    2 llyGppGtGKTllakavakelg 23  
                  +++G p  GKT + + +a+ l 
  KOO23005.1 1829 MVVGLPFAGKTCAYRTLAEALT 1850
                  689***************9873 PP

  == domain 3  score: 7.5 bits;  conditional E-value: 0.0062
                  EEEESSTTSSHHHHHHH.HHHHHTHE...............EEEEETTTCSSSSTTHHHHHHHHHHHHHHHTS......TSEEEEEETGG CS
         AAA    1 vllyGppGtGKTllaka.vakelgve...............fleisgsellskyvgesekkirelfkeakeka......kpsilfiDEid 68  
                  vll G+ GtGK+ l++  + + +++e               f+++s+ +       ++++ i + +++ ++        k++++f+D++ 
  KOO23005.1 2200 VLLAGNTGTGKSVLVRDrILNGINSEaaqaakgikdvynniFISFSAQTSQ----RATQNLIDNQLDKRRKGVfgppfgKKTVIFVDDLN 2285
                  79*************963666665443444445555545444555444444....77777777777775555599999877999999986 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.9   0.0    0.0044       3.7      31      66 ..    1551    1587 ..    1550    1657 .. 0.69
   2 !    9.4   0.0    0.0016       1.3      26      76 ..    2199    2252 ..    2186    2285 .. 0.71

  Alignments for each domain:
  == domain 1  score: 7.9 bits;  conditional E-value: 0.0044
      AAA_16   31 GesGvGKsslvrellralekdggif.lrgkcdqlesa 66  
                  G++G+GK+   + l++al k+ ++f  +   d l +a
  KOO23005.1 1551 GPAGTGKTETTKDLAKALAKQCVVFnCSDGLDYLAMA 1587
                  9********************5555333333333333 PP

  == domain 2  score: 9.4 bits;  conditional E-value: 0.0016
      AAA_16   26 lvllsGesGvGKsslv.rellralekdggiflrgkcdql.esaipysa.laqal 76  
                   vll G+ G+GKs lv +++l+ ++ + + +++g  d +    i++sa   q +
  KOO23005.1 2199 PVLLAGNTGTGKSVLVrDRILNGINSEAAQAAKGIKDVYnNIFISFSAqTSQRA 2252
                  599*************88888888877555555555555222255544344444 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.6   0.0     0.044        38      12      47 ..    1551    1577 ..    1550    1592 .. 0.83
   2 ?   -0.4   0.0       1.5   1.2e+03       9      30 ..    1829    1850 ..    1826    1878 .. 0.85
   3 ?    6.5   0.0     0.011       9.6       9      69 ..    2201    2266 ..    2195    2306 .. 0.76
   4 ?   -2.6   0.1       7.3   6.2e+03      30      70 ..    2686    2727 ..    2678    2787 .. 0.69

  Alignments for each domain:
  == domain 1  score: 4.6 bits;  conditional E-value: 0.044
      AAA_22   12 GesGtGKTtllrrlleqldeeakaeeerpevvfvtl 47  
                  G++GtGKT + + l++ l          +++v +++
  KOO23005.1 1551 GPAGTGKTETTKDLAKAL---------AKQCVVFNC 1577
                  9**************999.........555555555 PP

  == domain 2  score: -0.4 bits;  conditional E-value: 1.5
      AAA_22    9 vvtGesGtGKTtllrrlleqld 30  
                  +v+G + +GKT  +r+l+e l+
  KOO23005.1 1829 MVVGLPFAGKTCAYRTLAEALT 1850
                  6899999***********9985 PP

  == domain 3  score: 6.5 bits;  conditional E-value: 0.011
      AAA_22    9 vvtGesGtGKTtllr.rlleqldeeakaee....erpevvfvtlpsstsskdllrellralglelk 69  
                  ++ G +GtGK++l+r r+l+  + ea+++          +f+  +++ts++   + + ++l+ ++k
  KOO23005.1 2201 LLAGNTGTGKSVLVRdRILNGINSEAAQAAkgikDVYNNIFISFSAQTSQRATQNLIDNQLDKRRK 2266
                  789*********998355555554444444677766677788888888888888888887776665 PP

  == domain 4  score: -2.6 bits;  conditional E-value: 7.3
      AAA_22   30 deeakaeeerpevv.fvtlpsstsskdllrellralglelka 70  
                   +++k e++ ++ v +++++ ++s +dl  + lr+l++++  
  KOO23005.1 2686 LQDIKMEDNVRKAVqEMCCSFQESVADLSYKYLRELKRNNYV 2727
                  455555555555666999999999999999999999976655 PP

>> RNA_helicase  RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.8   0.0    0.0051       4.4       5      26 ..    1551    1572 ..    1550    1615 .. 0.79
   2 ?    2.7   0.0      0.19   1.6e+02       1      26 [.    2200    2222 ..    2200    2243 .. 0.77
   3 ?    0.2   0.0       1.1   9.7e+02      32     103 ..    3308    3383 ..    3294    3385 .. 0.82

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 0.0051
  RNA_helicase    5 GpsgeGKStlakeLakallkkl 26  
                    Gp+g+GK+ ++k+Lakal+k+ 
    KOO23005.1 1551 GPAGTGKTETTKDLAKALAKQC 1572
                    9******************886 PP

  == domain 2  score: 2.7 bits;  conditional E-value: 0.19
  RNA_helicase    1 iwlyGpsgeGKStlakeLakallkkl 26  
                    ++l G++g+GKS+l+++   ++l+ +
    KOO23005.1 2200 VLLAGNTGTGKSVLVRD---RILNGI 2222
                    5789**********998...555444 PP

  == domain 3  score: 0.2 bits;  conditional E-value: 1.1
  RNA_helicase   32 dsvysrnpeddfwdgYtgqevvvidDfgqvk...deenps.dlaelirlvsstpyplnmasleekgtlftSkvviv 103 
                    ++ + +++ed++++  ++ e ++ dD ++++   d +  s +++ +  +++ t+ +l+  + + k + ++S++++ 
    KOO23005.1 3308 NKRVLKEVEDKILHTLSSSEGNILDDASAIEilgDAKVISdQISAKQVIADKTTQKLDAIRESYKSVAYRSSILFF 3383
                    4445689999******************9998744445555999999999****************9999999876 PP

>> DUF1202  Protein of unknown function (DUF1202)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   3.6   3.7e-05     0.032     149     240 ..    2767    2860 ..    2754    2869 .. 0.80

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 3.7e-05
     DUF1202  149 qkasipalekelkaldkkivvakkeadaywgk.dadgkqltreeafkkilkerdeyvkandsevyavkye.kevyqpaldacrkqseecyevai 240 
                    as+ ++++el+al+ ++vva+k+ada   k dad k+ ++ +      k   e v an s + a          palda  k     +++ i
  KOO23005.1 2767 TAASVAGMQQELQALQPQLVVARKDADALMIKiDADSKEAAKVKEVVSKDKAAAEVVAANASAIKADCEAgLAEALPALDAAVKALATLKKADI 2860
                  5789************************988769******999988888999999999999988776433123356888888877666666655 PP

>> NmrA  NmrA-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   0.00016      0.14      31     112 ..    1559    1649 ..    1556    1658 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.00016
                  -S-SHHHHHHHHSTTEEEES-TT-HHHHHHHHTT-SEEEE---GG.........S-HHHHHHHHHHHHHHHS-SEEEEEE---GG.GT.SS CS
        NmrA   31 dtkselakslkeaGvelvkgdlddkeslvealkgvdvvfsvtgfy.........skeiedgkklvdAakeaGvkhfiySslgddndrsnae 112 
                  +t+++lak+l+++ v++ + d  d+  +++ +kgv ++ +   f             +++++  ++ a +aGv++fi+ +   + d +na+
  KOO23005.1 1559 ETTKDLAKALAKQCVVFNCSDGLDYLAMAKFFKGVAAAGAWACFDefnridlevLSVVAQQVLTIQRAIAAGVQRFIFEGTDLAIDPTNAV 1649
                  57899*****************************9988766666666899887767799*******************9888777777766 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.0   0.00079      0.67       5      69 ..    1551    1625 ..    1550    1655 .. 0.69
   2 ?   -0.6   0.0       2.1   1.8e+03       1      16 [.    2200    2215 ..    2200    2264 .. 0.89

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00079
      AAA_18    5 GtpGvGKttlakeLskrl.gf..gvnlrdvakenglllevdpe.......aldeskrldedkldklldaleenss 69  
                  G++G+GKt+ +k L+k l +   ++n++d +    +   +           +de++r+d ++l ++ +++  + +
  KOO23005.1 1551 GPAGTGKTETTKDLAKALaKQcvVFNCSDGLDYLAMAKFFKGVaaagawaCFDEFNRIDLEVLSVVAQQVLTIQR 1625
                  9***************98433575555554444444333333355577778888888888888888877776655 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 2.1
      AAA_18    1 IlltGtpGvGKttlak 16  
                  +ll+G  G+GK+ l +
  KOO23005.1 2200 VLLAGNTGTGKSVLVR 2215
                  799*********9876 PP

>> Sigma54_activat  Sigma-54 interaction domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.1   0.0      0.16   1.4e+02      28      72 ..    1550    1591 ..    1532    1603 .. 0.83
   2 ?    8.4   0.0    0.0019       1.6      15      40 ..    2190    2215 ..    2179    2269 .. 0.84

  Alignments for each domain:
  == domain 1  score: 2.1 bits;  conditional E-value: 0.16
                       ECSTTSSHHHHHHHHHHHSTTTTS-EEEEETTTS-TTCHHHHHHE CS
  Sigma54_activat   28 tGesGtGKellaraiheaskrkekpfvavncaaipeelleseLFG 72  
                       +G  GtGK+   + + +a    +k+ v +nc++  + l ++++F 
       KOO23005.1 1550 EGPAGTGKTETTKDLAKAL---AKQCVVFNCSDGLDYLAMAKFFK 1591
                       5999****99988877655...5789************9999994 PP

  == domain 2  score: 8.4 bits;  conditional E-value: 0.0019
                       HHHHCTSSS-EEEECSTTSSHHHHHH CS
  Sigma54_activat   15 ikkvaktdlsvlitGesGtGKellar 40  
                       +++++++ ++vl+ G++GtGK++l r
       KOO23005.1 2190 VDTCITHGIPVLLAGNTGTGKSVLVR 2215
                       566778889*************9976 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.2   0.0       0.1        90       6      27 ..    1551    1574 ..    1549    1639 .. 0.86
   2 ?    5.6   0.0     0.019        16       3      24 ..    1829    1850 ..    1828    1914 .. 0.85
   3 ?   -0.4   0.0       1.4   1.2e+03       2      17 ..    2200    2215 ..    2200    2221 .. 0.89

  Alignments for each domain:
  == domain 1  score: 3.2 bits;  conditional E-value: 0.1
      AAA_33    6 GlpGsGKstlaerllkklg..avl 27  
                  G++G+GK+   + l+k+l+  +v+
  KOO23005.1 1551 GPAGTGKTETTKDLAKALAkqCVV 1574
                  9***************99875444 PP

  == domain 2  score: 5.6 bits;  conditional E-value: 0.019
      AAA_33    3 llvGlpGsGKstlaerllkklg 24  
                  ++vGlp +GK+  ++ l+++l+
  KOO23005.1 1829 MVVGLPFAGKTCAYRTLAEALT 1850
                  89****************9987 PP

  == domain 3  score: -0.4 bits;  conditional E-value: 1.4
      AAA_33    2 vllvGlpGsGKstlae 17  
                  vll G  G+GKs l++
  KOO23005.1 2200 VLLAGNTGTGKSVLVR 2215
                  6899*********998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (4146 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       956  (0.0533214); expected 358.6 (0.02)
Passed bias filter:                      722  (0.04027); expected 358.6 (0.02)
Passed Vit filter:                        86  (0.0047967); expected 17.9 (0.001)
Passed Fwd filter:                        30  (0.00167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              21  [number of targets reported over threshold]
# CPU time: 1.90u 0.30s 00:00:02.19 Elapsed: 00:00:00.53
# Mc/sec: 23713.15
//
Query:       KOO23006.1  [L=277]
Description: protein kinase domain containing protein, partial [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    6.6e-33  114.2   0.0    4.9e-32  111.3   0.0    1.9  1  Pkinase      Protein kinase domain
    1.5e-10   40.8   0.0    1.3e-06   28.0   0.0    2.0  2  Pkinase_Tyr  Protein tyrosine kinase
  ------ inclusion threshold ------
      0.051   12.9   0.0      0.068   12.5   0.0    1.2  1  Kdo          Lipopolysaccharide kinase (Kdo/WaaP) family


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  111.3   0.0   8.2e-36   4.9e-32       4     199 ..      22     275 ..      20     277 .] 0.90

  Alignments for each domain:
  == domain 1  score: 111.3 bits;  conditional E-value: 8.2e-36
                 EEEEEEESSEEEEEEEETTTTEEEEEEEEECHCHCHHHHHHHHHHHHHHHHHS.CTTB--EEEEEEE................................ CS
     Pkinase   4 leklGeGsfGkVykaveketgkivAvKkikkekakkkkekkvlrEikilkklk.hpnivrlyevfee................................ 69 
                 +  lG+G+fG V +av+ +++ +vA+K i k   +     +v  E+ +l++++ h n+vrl++++ +                                
  KOO23006.1  22 IDILGSGAFGIVCRAVDLQQNTTVALKLIFKAPGEPL---RVGGEL-VLQHIQpHANVVRLFDYYPSmsstelpmthlaesldperpfpksvfrtfrng 116
                 578****************************988875...489998.5677777***********999******************************* PP

                 ........SSEEEEEEE--TTEBHHHHHH............HHSS--HHHHHHHHHHHHHHHHHHHHTTEE-SS-SGGGEEEETTTE.......EEE-S CS
     Pkinase  70 ........kdelylvleyveggeladlle............rkgslseeeakkiakqilegleylHskgiiHrDlKpeNiLidekge.......lKitD 141
                          +  +lv+e++eg+el+d+l              ++  +e++++ +++ +++++++lHs+g++H DlK eN+ +   +         ++ D
  KOO23006.1 117 rfvapmdaIEIAVLVFECIEGKELFDWLMedgpewwsgrdsVNKRPAESDVRGVMAGLVRAVAHLHSMGVCHLDLKLENVKLAAAAAgvppserARLLD 215
                 ****998767778***************999999999876555567788*******************************99953334566667***** PP

                 GTTSEESSSSCS.BCTTTSCGGGS-HHHHTTSCB.SHHHHHHHHHHHHHHHHHSS-STTT CS
     Pkinase 142 FGlakelesssk.ltsfvgtseYlAPEvlkeney.skkvDvWslGvilyelltgkppfsg 199
                 FG+a+   +  +     +gt++Y+APE+ ++ +y + k+Dv++lGv ly+l +++pp+ +
  KOO23006.1 216 FGFAEAGPNIGQlRCGPCGTETYMAPEMHTALPYdGCKADVFALGVCLYTLANKSPPWTH 275
                 ******9998887899******************9***********************95 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.9   0.0   3.3e-05       0.2       5      68 ..      23      80 ..      20      97 .. 0.78
   2 !   28.0   0.0   2.1e-10   1.3e-06      76     200 ..     128     268 ..     109     276 .. 0.86

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 3.3e-05
                 EEEEEESSEEEEEEEEETTTTSSEEEEEEEEESTTSSHHHHHHHHHHHHHHHTS.-BTTB--EEE CS
  Pkinase_Tyr  5 kklGeGafGkVvegtlkgekekkevkVavKtlkeeateeekeelleeakimkkl.khpnivkllg 68
                 + lG+GafG V+++       +++++Va+K + +   e    ++  e+ +++++  h n+v+l  
   KOO23006.1 23 DILGSGAFGIVCRAVDL----QQNTTVALKLIFKAPGEP--LRVGGEL-VLQHIqPHANVVRLFD 80
                 579***********988....899*******95544444..5666665.6777778999998875 PP

  == domain 2  score: 28.0 bits;  conditional E-value: 2.1e-10
                  EEEEEE--TTEBHHHHHHHT..........CTTTSBHHHHHHHHHHHHHHHHHHHHTTEEEST-SGGGEEEEE.......TTEEEE-STTTHEETTTS CS
  Pkinase_Tyr  76 llivteyvkgGdLlkfLrkk..........ekekltlkdllsfalqvAkGmeyLeskklvHrdlaarNvLlse.......nkvvkisDfGLardiekd 156
                   ++v+e ++g +L + L ++           +++   +d+  +++ + +++++L+s+ + H dl   Nv l+        ++ +++ DfG a++  + 
   KOO23006.1 128 AVLVFECIEGKELFDWLMEDgpewwsgrdsVNKRPAESDVRGVMAGLVRAVAHLHSMGVCHLDLKLENVKLAAaaagvppSERARLLDFGFAEAGPNI 225
                  57899999999999999999999999999877778889999999*************************9999999999999***********99555 PP

                  SEEEETTSSTSGGGGS-HHHHHHSEEE.HHHHHHHHHHHHHHHHT CS
  Pkinase_Tyr 157 deyvkkeeaklpvkWmapEslkekkft.sksDvWsfGvllwEift 200
                   + +   +      +mapE+ ++  +   k+Dv++ Gv+l+ +++
   KOO23006.1 226 GQLR--CGPCGTETYMAPEMHTALPYDgCKADVFALGVCLYTLAN 268
                  5544..44455678**********99747************8876 PP

>> Kdo  Lipopolysaccharide kinase (Kdo/WaaP) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   1.1e-05     0.068     123     166 ..     170     216 ..     125     221 .. 0.80

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 1.1e-05
         Kdo 123 llkavgrliaklhragvnHadlyaknillqqee...eeeaeiwliDl 166
                  +  + r++a lh++gv+H dl   n+ l +++      +++ l+D+
  KOO23006.1 170 VMAGLVRAVAHLHSMGVCHLDLKLENVKLAAAAagvPPSERARLLDF 216
                 55566799*******************99988855555677888887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (277 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       231  (0.0128842); expected 358.6 (0.02)
Passed bias filter:                      225  (0.0125495); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.42u 0.25s 00:00:00.67 Elapsed: 00:00:00.41
# Mc/sec: 2038.27
//
Query:       KOO23007.1  [L=221]
Description: calcyphosin-like protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.2e-08   33.4   0.2     0.0083   16.0   0.0    3.5  3  EF-hand_6  EF-hand domain
    1.8e-07   31.5   0.0    4.2e-05   23.9   0.0    2.3  2  EF-hand_7  EF-hand domain pair
    3.2e-07   30.1   0.2    0.00074   19.3   0.0    3.3  3  EF-hand_8  EF-hand domain pair
    4.2e-05   22.8   0.7       0.05   13.2   0.0    3.3  3  EF-hand_1  EF hand


Domain annotation for each model (and alignments):
>> EF-hand_6  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.0   1.8e-06    0.0083       3      27 ..      13      37 ..      11      40 .. 0.90
   2 !    6.4   0.0    0.0022       9.7       3      22 ..      49      68 ..      47      70 .. 0.88
   3 !    7.0   0.0    0.0014       6.2      12      27 ..      88     103 ..      82     106 .. 0.86

  Alignments for each domain:
  == domain 1  score: 16.0 bits;  conditional E-value: 1.8e-06
   EF-hand_6  3 reaFklfDkdgdGkidaeElrkalr 27
                  aF+lfD d +++i + E+ k +r
  KOO23007.1 13 GMAFRLFDPDASNSIGQTEFLKGIR 37
                579******************9998 PP

  == domain 2  score: 6.4 bits;  conditional E-value: 0.0022
   EF-hand_6  3 reaFklfDkdgdGkidaeEl 22
                +++Fk + + gdGki ++++
  KOO23007.1 49 HQIFKGLNTGGDGKIRQKDM 68
                689************98875 PP

  == domain 3  score: 7.0 bits;  conditional E-value: 0.0014
   EF-hand_6  12 dgdGkidaeElrkalr 27 
                  +dG i++e++ + ++
  KOO23007.1  88 GKDGVITPEDFEDYYS 103
                 69*********99886 PP

>> EF-hand_7  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.9   0.0   9.4e-09   4.2e-05       3      69 ..      11      71 ..       9      73 .. 0.88
   2 !    5.3   0.0     0.006        27      54      70 ..      86     102 ..      74     107 .. 0.80

  Alignments for each domain:
  == domain 1  score: 23.9 bits;  conditional E-value: 9.4e-09
   EF-hand_7  3 klkeaFkelDtdgdgyldkeellrllrkifqgagegsklsdeelellfkefDtdkdGvisfdEFlkl 69
                ++ +aF+++D d ++++ ++e+l+ +r      g + + ++  + ++fk ++t +dG+i   +++  
  KOO23007.1 11 EIGMAFRLFDPDASNSIGQTEFLKGIRG-----GLNAE-RKVLVHQIFKGLNTGGDGKIRQKDMEVK 71
                6889*****************999**95.....55555.999999**************99998765 PP

  == domain 2  score: 5.3 bits;  conditional E-value: 0.006
   EF-hand_7  54 DtdkdGvisfdEFlkly 70 
                 +  kdGvi+ ++F+ +y
  KOO23007.1  86 NRGKDGVITPEDFEDYY 102
                 56789999999999998 PP

>> EF-hand_8  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.3   0.0   1.6e-07   0.00074      20      49 ..       2      33 ..       1      35 [. 0.91
   2 ?    2.3   0.0     0.034   1.5e+02      31      47 ..      51      67 ..      47      68 .. 0.87
   3 !    4.6   0.0    0.0067        30       2      13 ..      90     101 ..      89     115 .. 0.80

  Alignments for each domain:
  == domain 1  score: 19.3 bits;  conditional E-value: 1.6e-07
   EF-hand_8 20 kk..glseeevdilfrefDtdgdGkisfeEFc 49
                ++  +l+++e+ + fr+fD d ++ i+++EF+
  KOO23007.1  2 QDvgSLNAQEIGMAFRLFDPDASNSIGQTEFL 33
                56668**************************7 PP

  == domain 2  score: 2.3 bits;  conditional E-value: 0.034
   EF-hand_8 31 lfrefDtdgdGkisfeE 47
                +f+ + t gdGki +++
  KOO23007.1 51 IFKGLNTGGDGKIRQKD 67
                8999*********8876 PP

  == domain 3  score: 4.6 bits;  conditional E-value: 0.0067
   EF-hand_8   2 kgkItreelrri 13 
                 +g+It+e++ + 
  KOO23007.1  90 DGVITPEDFEDY 101
                 8********874 PP

>> EF-hand_1  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.2   0.0   1.1e-05      0.05       1      27 [.      11      37 ..      11      38 .. 0.89
   2 ?    0.5   0.1      0.12   5.4e+02       3      17 ..      49      63 ..      47      68 .. 0.82
   3 !    5.3   0.0    0.0037        17      13      25 ..      89     101 ..      87     105 .. 0.86

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 1.1e-05
                HHHHHHHHHTTTSSSEEEHHHHHHHHH CS
   EF-hand_1  1 elkeiFrefDkDgdGkIdfeEfkellk 27
                e+  +Fr+fD D +  I   Ef++ ++
  KOO23007.1 11 EIGMAFRLFDPDASNSIGQTEFLKGIR 37
                56789*****************98765 PP

  == domain 2  score: 0.5 bits;  conditional E-value: 0.12
                HHHHHHHTTTSSSEE CS
   EF-hand_1  3 keiFrefDkDgdGkI 17
                 +iF+ + + gdGkI
  KOO23007.1 49 HQIFKGLNTGGDGKI 63
                6788888889****9 PP

  == domain 3  score: 5.3 bits;  conditional E-value: 0.0037
                 SSSEEEHHHHHHH CS
   EF-hand_1  13 gdGkIdfeEfkel 25 
                 +dG I+ e+f ++
  KOO23007.1  89 KDGVITPEDFEDY 101
                 8*********876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (221 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       358  (0.0199677); expected 358.6 (0.02)
Passed bias filter:                      316  (0.0176251); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.41u 0.24s 00:00:00.64 Elapsed: 00:00:00.40
# Mc/sec: 1678.42
//
Query:       KOO23008.1  [L=751]
Description: cyclic nucleotide-binding protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    8.3e-24   83.8   0.5      5e-11   42.9   0.1    2.6  2  EF-hand_7     EF-hand domain pair
    2.6e-18   64.1   4.7     0.0021   17.5   0.0    4.6  4  EF-hand_1     EF hand
    3.5e-17   62.0   0.3    1.8e-07   30.9   0.1    2.5  2  EF-hand_8     EF-hand domain pair
    1.6e-16   59.0   5.3     0.0038   16.6   0.2    4.5  4  EF-hand_5     EF hand
    2.5e-15   55.0   2.8     0.0056   16.5   0.0    4.7  4  EF-hand_6     EF-hand domain
    9.4e-11   41.4   2.8    1.6e-10   40.6   2.8    1.4  1  Ion_trans     Ion transport protein
    1.3e-09   38.3   0.0      0.003   17.9   0.0    2.6  2  EF-hand_9     EF-hand domain
    0.00057   19.9   0.0     0.0016   18.5   0.0    1.8  1  cNMP_binding  Cyclic nucleotide-binding domain
     0.0071   16.6   0.0        4.8    7.5   0.0    2.4  2  SPARC_Ca_bdg  Secreted protein acidic and rich in cysteine Ca
     0.0097   15.8   0.5        1.4    8.9   0.1    2.6  2  EF-hand_4     Cytoskeletal-regulatory complex EF hand
  ------ inclusion threshold ------
      0.047   13.9   0.6         13    6.1   0.1    2.4  2  Dockerin_1    Dockerin type I domain
       0.08   13.3   0.1         20    5.6   0.0    2.6  2  EF-hand_14    EF-hand domain


Domain annotation for each model (and alignments):
>> EF-hand_7  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.9   0.1   3.4e-14     5e-11       6      69 ..     509     567 ..     506     569 .. 0.93
   2 !   38.6   0.0   7.4e-13   1.1e-09       6      69 ..     620     678 ..     617     680 .. 0.93

  Alignments for each domain:
  == domain 1  score: 42.9 bits;  conditional E-value: 3.4e-14
   EF-hand_7   6 eaFkelDtdgdgyldkeellrllrkifqgagegsklsdeelellfkefDtdkdGvisfdEFlkl 69 
                  aF++lD+d +g++++ el+++l k     +  s++s+ e++ l++ +D ++dG++ +dEF+ +
  KOO23008.1 509 KAFNLLDKDVSGSISVGELKSALVK-----EGLSEVSEAEIQSLIDQVDVNGDGELQLDEFEIF 567
                 46*******************9998.....999999*************************976 PP

  == domain 2  score: 38.6 bits;  conditional E-value: 7.4e-13
   EF-hand_7   6 eaFkelDtdgdgyldkeellrllrkifqgagegsklsdeelellfkefDtdkdGvisfdEFlkl 69 
                  aF++lD+d +g+++++el+++l k     +  s++s+ e++ l++ +D ++dG++  dEF+ +
  KOO23008.1 620 KAFNLLDKDVSGSISVSELKSALVK-----EGLSEVSEAEIQSLIDQVDANGDGELQPDEFEIF 678
                 46*******************9998.....999999*************************976 PP

>> EF-hand_1  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.0   4.3e-06    0.0065       4      27 ..     509     532 ..     508     534 .. 0.93
   2 !   15.0   0.6   8.9e-06     0.013       1      26 [.     543     568 ..     543     571 .. 0.90
   3 !   17.5   0.0   1.4e-06    0.0021       4      27 ..     620     643 ..     619     645 .. 0.93
   4 !   14.2   0.2   1.6e-05     0.023       1      26 [.     654     679 ..     654     682 .. 0.89

  Alignments for each domain:
  == domain 1  score: 15.9 bits;  conditional E-value: 4.3e-06
                 HHHHHHTTTSSSEEEHHHHHHHHH CS
   EF-hand_1   4 eiFrefDkDgdGkIdfeEfkellk 27 
                 ++F+++DkD +G I+  E+k++l 
  KOO23008.1 509 KAFNLLDKDVSGSISVGELKSALV 532
                 79*******************986 PP

  == domain 2  score: 15.0 bits;  conditional E-value: 8.9e-06
                 HHHHHHHHHTTTSSSEEEHHHHHHHH CS
   EF-hand_1   1 elkeiFrefDkDgdGkIdfeEfkell 26 
                 e++ +++ +D++gdG + ++Ef  ++
  KOO23008.1 543 EIQSLIDQVDVNGDGELQLDEFEIFW 568
                 78999*****************8776 PP

  == domain 3  score: 17.5 bits;  conditional E-value: 1.4e-06
                 HHHHHHTTTSSSEEEHHHHHHHHH CS
   EF-hand_1   4 eiFrefDkDgdGkIdfeEfkellk 27 
                 ++F+++DkD +G I+ +E+k++l 
  KOO23008.1 620 KAFNLLDKDVSGSISVSELKSALV 643
                 79*******************986 PP

  == domain 4  score: 14.2 bits;  conditional E-value: 1.6e-05
                 HHHHHHHHHTTTSSSEEEHHHHHHHH CS
   EF-hand_1   1 elkeiFrefDkDgdGkIdfeEfkell 26 
                 e++ +++ +D +gdG +  +Ef  ++
  KOO23008.1 654 EIQSLIDQVDANGDGELQPDEFEIFW 679
                 78999*****************8776 PP

>> EF-hand_8  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.9   0.1   1.2e-10   1.8e-07       2      52 ..     519     568 ..     519     570 .. 0.88
   2 !   28.7   0.0   5.7e-10   8.5e-07       2      51 ..     630     678 ..     630     681 .. 0.88

  Alignments for each domain:
  == domain 1  score: 30.9 bits;  conditional E-value: 1.2e-10
   EF-hand_8   2 kgkItreelrril.rilglkkglseeevdilfrefDtdgdGkisfeEFcvll 52 
                 +g+I++ el+++l +  gl + +se e+++l++ +D +gdG + ++EF  ++
  KOO23008.1 519 SGSISVGELKSALvKE-GLSE-VSEAEIQSLIDQVDVNGDGELQLDEFEIFW 568
                 599**********666.7775.**************************6555 PP

  == domain 2  score: 28.7 bits;  conditional E-value: 5.7e-10
   EF-hand_8   2 kgkItreelrril.rilglkkglseeevdilfrefDtdgdGkisfeEFcvl 51 
                 +g+I++ el+++l +  gl + +se e+++l++ +D +gdG +  +EF  +
  KOO23008.1 630 SGSISVSELKSALvKE-GLSE-VSEAEIQSLIDQVDANGDGELQPDEFEIF 678
                 599**********666.7775.*********************99999555 PP

>> EF-hand_5  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.7   0.0   9.5e-05      0.14       4      23 ..     510     529 ..     508     532 .. 0.87
   2 !   15.0   0.6   8.4e-06     0.013       2      22 ..     545     565 ..     544     568 .. 0.87
   3 !   14.5   0.0   1.2e-05     0.018       4      23 ..     621     640 ..     619     643 .. 0.87
   4 !   16.6   0.2   2.6e-06    0.0038       2      22 ..     656     676 ..     655     679 .. 0.87

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 9.5e-05
                 HHHHH-SS-SSCE-HHHHHH CS
   EF-hand_5   4 tFqaiDlNgDGkIskeELkt 23 
                 +F+ +D++ +G Is+ ELk 
  KOO23008.1 510 AFNLLDKDVSGSISVGELKS 529
                 5*****************97 PP

  == domain 2  score: 15.0 bits;  conditional E-value: 8.4e-06
                 HHHHHHH-SS-SSCE-HHHHH CS
   EF-hand_5   2 kdtFqaiDlNgDGkIskeELk 22 
                 + + +++D+NgDG +  +E++
  KOO23008.1 545 QSLIDQVDVNGDGELQLDEFE 565
                 66789***************7 PP

  == domain 3  score: 14.5 bits;  conditional E-value: 1.2e-05
                 HHHHH-SS-SSCE-HHHHHH CS
   EF-hand_5   4 tFqaiDlNgDGkIskeELkt 23 
                 +F+ +D++ +G Is++ELk 
  KOO23008.1 621 AFNLLDKDVSGSISVSELKS 640
                 5*****************97 PP

  == domain 4  score: 16.6 bits;  conditional E-value: 2.6e-06
                 HHHHHHH-SS-SSCE-HHHHH CS
   EF-hand_5   2 kdtFqaiDlNgDGkIskeELk 22 
                 + + +++D+NgDG + ++E++
  KOO23008.1 656 QSLIDQVDANGDGELQPDEFE 676
                 66789***************8 PP

>> EF-hand_6  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.0   1.3e-05      0.02       4      27 ..     509     532 ..     508     537 .. 0.91
   2 !   10.2   0.2   0.00039      0.59       2      24 ..     544     566 ..     543     571 .. 0.87
   3 !   16.5   0.0   3.7e-06    0.0056       4      27 ..     620     643 ..     619     648 .. 0.91
   4 !    9.6   0.1    0.0006       0.9       2      24 ..     655     677 ..     654     682 .. 0.87

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 1.3e-05
   EF-hand_6   4 eaFklfDkdgdGkidaeElrkalr 27 
                 +aF+l+Dkd +G+i+  El++al 
  KOO23008.1 509 KAFNLLDKDVSGSISVGELKSALV 532
                 69********************96 PP

  == domain 2  score: 10.2 bits;  conditional E-value: 0.00039
   EF-hand_6   2 lreaFklfDkdgdGkidaeElrk 24 
                 ++++ ++ D++gdG++  +E+  
  KOO23008.1 544 IQSLIDQVDVNGDGELQLDEFEI 566
                 77888999*************76 PP

  == domain 3  score: 16.5 bits;  conditional E-value: 3.7e-06
   EF-hand_6   4 eaFklfDkdgdGkidaeElrkalr 27 
                 +aF+l+Dkd +G+i+ +El++al 
  KOO23008.1 620 KAFNLLDKDVSGSISVSELKSALV 643
                 69********************96 PP

  == domain 4  score: 9.6 bits;  conditional E-value: 0.0006
   EF-hand_6   2 lreaFklfDkdgdGkidaeElrk 24 
                 ++++ ++ D +gdG++ ++E+  
  KOO23008.1 655 IQSLIDQVDANGDGELQPDEFEI 677
                 77888999*************76 PP

>> Ion_trans  Ion transport protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.6   2.8   1.1e-13   1.6e-10      32     243 ..      19     267 ..       5     269 .. 0.72

  Alignments for each domain:
  == domain 1  score: 40.6 bits;  conditional E-value: 1.1e-13
                 C..HHHHHHHHHHHHHHHHHHHHHHHHHTH..........HHHHHHCHSHHHHHHHHHHHHHHHHH..........HHHH................HHH CS
   Ion_trans  32 k..tileilelvftaiftlemllkilalgl..........likkrYlrdpwnilDflvvlpsllsl..........vlse................esl 92 
                     ++ ++++v++ +f+ ++++++++ ++          +  +rY+r   ++ D++  +p  l+l          +  +                  l
  KOO23008.1  19 GpfIAWWWFNTVVDLWFIGDIAINFRTGYVreghffyddwQVFMRYFRGS-FFQDVIGSVPLNLVLiavdpeypygR--DandaeasdaeafarlnRLL 114
                 35677889*******************99977777777776667777775.55555555555555556555555550..05566777777788777778 PP

                 HHHHHHHHHGGGGGGHHHCHSHHHHHHHHH...HHHHHHHHHHHHHHHHHHHHHHHHHH.HHHHTTSCCCC...CC...SCCSTSSSTTTSSSSSS... CS
   Ion_trans  93 lllsvlrlfrvlrllklisrleglrtlvta...lirsvkdllnvlllllvvlfifalig.vqlfkgklrek...ne...caktwenpnngntnFdn... 178
                  ll++l+l+++ rl kl +++e+++ + +    l+r++  +l  l++++++++++ +i+ ++l ++ l  k   +e       w +         n   
  KOO23008.1 115 RLLRLLKLAKLTRLTKLSKSFENVEQVFKFnagLMRIITLVLVSLFICHWFGCLWWMIAdLELENEALDSKwftGEskwGPAVWLK---------Napd 204
                 88888888888888888888888888555333499999999*****************9889995555544444112332333333.........2444 PP

                 ....HHHHHHHHHHHHTTSSHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
   Ion_trans 179 ....fftallwlfrlmttegwgdilyatldekskvaliyfvifiilgsflllNlliaviadnfqelter 243
                     +++a++w   ++t+    ++ ++t  e       ++ +f ++++++l + +i   a++++++ ++
  KOO23008.1 205 fglkYVHAFYWGAGMATSMVPSEVDPVTKLEV------LVTTFTLFFGLMLNAFVISSLASAVASMDSK 267
                 4445**********999997777777777777......9999999999999999999999999988876 PP

>> EF-hand_9  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.6   0.0   2.4e-06    0.0036       3      59 ..     510     565 ..     508     568 .. 0.95
   2 !   17.9   0.0     2e-06     0.003       3      58 ..     621     675 ..     619     678 .. 0.94

  Alignments for each domain:
  == domain 1  score: 17.6 bits;  conditional E-value: 2.4e-06
   EF-hand_9   3 vFevcDtqktGrVpvsrlidyLravtaqdpeeseLeelakelDPdgedasvdldtfl 59 
                  F++ D +  G + v +l++ L + +  + +e+e+++l  ++D +g  ++++ld f 
  KOO23008.1 510 AFNLLDKDVSGSISVGELKSALVKEGLSEVSEAEIQSLIDQVDVNGD-GELQLDEFE 565
                 59******************************************999.*******96 PP

  == domain 2  score: 17.9 bits;  conditional E-value: 2e-06
   EF-hand_9   3 vFevcDtqktGrVpvsrlidyLravtaqdpeeseLeelakelDPdgedasvdldtf 58 
                  F++ D +  G + vs+l++ L + +  + +e+e+++l  ++D +g  ++++ d f
  KOO23008.1 621 AFNLLDKDVSGSISVSELKSALVKEGLSEVSEAEIQSLIDQVDANGD-GELQPDEF 675
                 59*****************************************9998.99988888 PP

>> cNMP_binding  Cyclic nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.5   0.0   1.1e-06    0.0016       3      87 ..     362     453 ..     360     455 .. 0.80

  Alignments for each domain:
  == domain 1  score: 18.5 bits;  conditional E-value: 1.1e-06
                   EE-TT-EEE-TTSB-SEEEEEEES-EEEEEEETTS.EEEEEEE-TTEEESHHHHH............HTS--SSEEEESSTEEEEEEEHHHHHHHHH CS
  cNMP_binding   3 sfkagevifrqGdpadslyivlsGevrvyrlsedgkevvlavlgpGdlfGelall............tgeprtatvvAltdsellalprddflellq 87 
                    f + + i+ +G+p +++y++ +G v++   ++ g e  ++ lg+++ fG    +            + ++ +++++++t + ++ l+ +++  +l+
    KOO23008.1 362 VFTPRQQIYLEGEPLTQVYFINRGLVQL---TRKG-E-AIGMLGNNENFGLDDYVraceahgshflrEPAQTSHSARTMTYCDVMILTIEELTGALA 453
                   68999***********************...5666.3.78999999999987777666676666654445588889999999999999888877665 PP

>> SPARC_Ca_bdg  Secreted protein acidic and rich in cysteine Ca binding region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.6   0.0    0.0063       9.5      59     110 ..     510     564 ..     475     566 .. 0.86
   2 !    7.5   0.0    0.0032       4.8      59     110 ..     621     675 ..     602     677 .. 0.87

  Alignments for each domain:
  == domain 1  score: 6.6 bits;  conditional E-value: 0.0063
  SPARC_Ca_bdg  59 kFsklDtnsdkvlsksELap..lraplvk.lehCikpflescDadkdkkislkEw 110
                    F+ lD++  +++s  EL++  +++ l +  e  i+ ++++ D++ d++++l E+
    KOO23008.1 510 AFNLLDKDVSGSISVGELKSalVKEGLSEvSEAEIQSLIDQVDVNGDGELQLDEF 564
                   5999**************8644677787625888*******************98 PP

  == domain 2  score: 7.5 bits;  conditional E-value: 0.0032
  SPARC_Ca_bdg  59 kFsklDtnsdkvlsksELap..lraplvk.lehCikpflescDadkdkkislkEw 110
                    F+ lD++  +++s sEL++  +++ l +  e  i+ ++++ Da+ d++++  E+
    KOO23008.1 621 AFNLLDKDVSGSISVSELKSalVKEGLSEvSEAEIQSLIDQVDANGDGELQPDEF 675
                   5999**************8644677787625888*****************9998 PP

>> EF-hand_4  Cytoskeletal-regulatory complex EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.9   0.1   0.00093       1.4      38      72 ..     537     571 ..     511     585 .. 0.81
   2 ?    4.5   0.0     0.023        34      38      72 ..     648     682 ..     620     696 .. 0.76

  Alignments for each domain:
  == domain 1  score: 8.9 bits;  conditional E-value: 0.00093
   EF-hand_4  38 skleedklekiwdladidedgkldfeefciamrli 72 
                 s+++e +++++ d  d++ dg+l ++ef i   l 
  KOO23008.1 537 SEVSEAEIQSLIDQVDVNGDGELQLDEFEIFWELF 571
                 788899999999****************9987775 PP

  == domain 2  score: 4.5 bits;  conditional E-value: 0.023
   EF-hand_4  38 skleedklekiwdladidedgkldfeefciamrli 72 
                 s+++e +++++ d  d + dg+l  +ef i   l 
  KOO23008.1 648 SEVSEAEIQSLIDQVDANGDGELQPDEFEIFWELF 682
                 6778888999999999999*********9987765 PP

>> Dockerin_1  Dockerin type I domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.1   0.1    0.0084        13       3      44 ..     517     558 ..     515     560 .. 0.78
   2 ?    5.8   0.0     0.011        16       3      44 ..     628     669 ..     626     672 .. 0.92

  Alignments for each domain:
  == domain 1  score: 6.1 bits;  conditional E-value: 0.0084
                 ETTSSSC-SHHHHHHHHHHCTSSEBTTSCCCHGGGSTT-SSC CS
  Dockerin_1   3 DVNgDgkVnalDalliinylnqregqssssngkaaDvNgDGr 44 
                 DV g+ +V  l  +l++  l + ++ + +s  +  DvNgDG+
  KOO23008.1 517 DVSGSISVGELKSALVKEGLSEVSEAEIQSLIDQVDVNGDGE 558
                 6666666666667788888888888888999999******97 PP

  == domain 2  score: 5.8 bits;  conditional E-value: 0.011
                 ETTSSSC-SHHHHHHHHHHCTSSEBTTSCCCHGGGSTT-SSC CS
  Dockerin_1   3 DVNgDgkVnalDalliinylnqregqssssngkaaDvNgDGr 44 
                 DV g+ +V+ l  +l++  l + ++ + +s  +  D NgDG+
  KOO23008.1 628 DVSGSISVSELKSALVKEGLSEVSEAEIQSLIDQVDANGDGE 669
                 9999999999999********99999999************7 PP

>> EF-hand_14  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.7   0.0     0.026        39       6      33 ..     511     538 ..     508     571 .. 0.88
   2 ?    5.6   0.0     0.013        20       6      33 ..     622     649 ..     619     688 .. 0.83

  Alignments for each domain:
  == domain 1  score: 4.7 bits;  conditional E-value: 0.026
  EF-hand_14   6 fdlfkdeetdklsvakllkaLaetGirk 33 
                 f+l++++ ++++sv +l +aL + G+ +
  KOO23008.1 511 FNLLDKDVSGSISVGELKSALVKEGLSE 538
                 99***9*******************975 PP

  == domain 2  score: 5.6 bits;  conditional E-value: 0.013
  EF-hand_14   6 fdlfkdeetdklsvakllkaLaetGirk 33 
                 f+l++++ ++++sv++l +aL + G+ +
  KOO23008.1 622 FNLLDKDVSGSISVSELKSALVKEGLSE 649
                 99***9*******************976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (751 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       481  (0.026828); expected 358.6 (0.02)
Passed bias filter:                      390  (0.0217525); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.61u 0.27s 00:00:00.88 Elapsed: 00:00:00.43
# Mc/sec: 5221.52
//
Query:       KOO23009.1  [L=406]
Description: snornp assembly factor [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.8e-26   91.4   0.0    3.6e-22   78.8   0.0    2.8  3  Gar1      Gar1/Naf1 RNA binding region
  ------ inclusion threshold ------
        1.6    7.5  11.0      0.038   12.9   3.9    1.7  2  DMP1      Dentin matrix protein 1 (DMP1)


Domain annotation for each model (and alignments):
>> Gar1  Gar1/Naf1 RNA binding region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.5   0.4       0.1   9.4e+02     125     147 ..      44      66 ..      27      72 .. 0.74
   2 !    8.9   0.0   0.00013       1.2       6      55 ..      70     117 ..      65     131 .. 0.88
   3 !   78.8   0.0     4e-26   3.6e-22      60     151 ..     248     339 ..     244     342 .. 0.96

  Alignments for each domain:
  == domain 1  score: -0.5 bits;  conditional E-value: 0.1
                 XXXXXXXXXXXXXXXXXXXXXXX CS
        Gar1 125 endeElpeeevefsdDekeaeak 147
                 e+  E ++   e sdDe e  a 
  KOO23009.1  44 EDASESSSSGWESSDDEHEIDAE 66 
                 4556677778999****997665 PP

  == domain 2  score: 8.9 bits;  conditional E-value: 0.00013
                 ----TT----TTS-EEEEEEEEEEETTEEEEEE---S--B--BTT-EEEE CS
        Gar1   6 pvekedieigppeevleiGtvssivenevviksttsgekkvldfnsilfl 55 
                    +++i+++  +++ e + v+ iv   v++++        ld++s+l+l
  KOO23009.1  70 VDDPRRIQLERGTTLAEAAIVQTIVGLLVIVQAVPG--LPPLDEGSVLCL 117
                 55678999999***********************54..69*********9 PP

  == domain 3  score: 78.8 bits;  conditional E-value: 4e-26
                 EEEE--EEES-SSS-EEEEE--GGHHHHHHHTTTTSEEEEE-X..XXXXXXXXXXXXX..XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
        Gar1  60 qiGkVdEifGpvnepyysVklnsseeikaksfkvgdkvyiapdlplerfllteelkkk..kgpdasnendeElpeeevefsdDekeaeakkkkk 151
                 ++G++ EifGpv  p ys ++ ++  + a ++  g+++y a++   ++fl+t  +++   +g+das  +deE+p+ee efsdDe+eaeak++ k
  KOO23009.1 248 AVGRIEEIFGPVARPNYSLRFADQATLDALGLRPGMRLYAAVE--QANFLSTTAIMQSslRGSDASDFHDEEPPAEELEFSDDEAEAEAKRRMK 339
                 69*****************************************..**********99989******************************9876 PP

>> DMP1  Dentin matrix protein 1 (DMP1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   3.9   4.3e-06     0.038     171     230 ..      25      84 ..      16      92 .. 0.88
   2 ?   -2.3   0.7      0.17   1.5e+03      86     139 ..     297     352 ..     288     359 .. 0.62

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 4.3e-06
        DMP1 171 devssrpesgdstkdseSeEhwvgggsegdsshgdgsefddegmqsdDPdsirsersnsr 230
                 d +++++++gd +  s   E+  ++ s g +s+ d++e d e+m  dDP  i+ er+ + 
  KOO23009.1  25 DAAEQAAKAGDGEVASAVVEDASESSSSGWESSDDEHEIDAESMPVDDPRRIQLERGTTL 84 
                 556678889999999**************************************9999765 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 0.17
        DMP1  86 rpagglskstgkeeddkddDEddSGDDtfgdedngpgpeerq..ggnsrlkseeDs 139
                 ++a   s+  g++++d +d+E  + +  f+d++ +  ++ r   g ++r k+  D 
  KOO23009.1 297 TTAIMQSSLRGSDASDFHDEEPPAEELEFSDDEAEAEAKRRMklGASARAKASHDA 352
                 55555555566666777777777777777777766666665555566666665554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (406 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       530  (0.029561); expected 358.6 (0.02)
Passed bias filter:                      286  (0.0159518); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.46u 0.26s 00:00:00.72 Elapsed: 00:00:00.41
# Mc/sec: 2966.04
//
Query:       KOO23010.1  [L=601]
Description: protein disulfide isomerase-like 1-4-like isoform 1 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
      9e-34  115.6   0.0    8.8e-16   57.8   0.0    2.4  2  Thioredoxin    Thioredoxin
    0.00011   22.4   0.0       0.42   10.8   0.0    2.6  2  Thioredoxin_7  Thioredoxin-like
    0.00037   20.4   0.0      0.054   13.4   0.0    2.3  2  AhpC-TSA       AhpC/TSA family
     0.0029   18.0   0.0       0.49   10.9   0.0    2.9  2  Thioredoxin_2  Thioredoxin-like domain
      0.003   17.9   0.0          5    7.5   0.0    3.0  3  Thioredoxin_8  Thioredoxin-like


Domain annotation for each model (and alignments):
>> Thioredoxin  Thioredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.8   0.0   2.5e-19   8.8e-16       3      82 ..      64     145 ..      62     170 .. 0.80
   2 !   55.6   0.0   1.2e-18   4.3e-15       3      85 ..     482     564 ..     480     584 .. 0.86

  Alignments for each domain:
  == domain 1  score: 57.8 bits;  conditional E-value: 2.5e-19
                  EESSHHHHHHHHTTTSSEEEEEEE-TTSHHHHCHHHHHHHHHHHCTT...TSEEEEEETTTSHHHHHHTT-SSSSEEEEEETT CS
  Thioredoxin   3 lvltkenFeeevakekklvlveFyApwCghCkalaPeleklaeelkd...kvklakvdvdenedlakkyevegiPtlklfkng 82 
                  lvl+++nF  +  +    +lv+FyApwC h +alaPe++++a+el++   +v+lakvd+ ++e la+ ++v g+Ptl+ f + 
   KOO23010.1  64 LVLSAANFTMARGH-FPVMLVQFYAPWCSHSRALAPEFAAAADELQArglEVRLAKVDAVAEEALADLFHVAGYPTLLWFTSL 145
                  56677777766665.7789***************************99*****************************988654 PP

  == domain 2  score: 55.6 bits;  conditional E-value: 1.2e-18
                  EESSHHHHHHHHTTTSSEEEEEEE-TTSHHHHCHHHHHHHHHHHCTT..TSEEEEEETTTSHHHHHHTT-SSSSEEEEEETTEEE CS
  Thioredoxin   3 lvltkenFeeevakekklvlveFyApwCghCkalaPeleklaeelkd..kvklakvdvdenedlakkyevegiPtlklfkngkev 85 
                  + ++ ++F++ v+ +  +vl++ +ApwCghCk+l+Pe+ +l  ++++   v++ak+d ++ne    +   +g+Ptl+lf +++++
   KOO23010.1 482 ALVVGDTFDTLVNVSGLDVLLQIFAPWCGHCKKLEPEYLQLGVRFAEikSVVIAKMDGTKNEVPGLE--YDGFPTLYLFTASNRQ 564
                  5677899***************************************999************777666..57********998843 PP

>> Thioredoxin_7  Thioredoxin-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.8   0.0   0.00012      0.42      20      79 ..      81     140 ..      66     144 .. 0.66
   2 !    8.9   0.0   0.00048       1.7      18      42 ..     498     522 ..     495     560 .. 0.66

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00012
                    EEEEE--TT-HHHHHHHHHHHH-.HHHHH.HHHT-EEEEESS..--S-GGG.-TT---SSEEE CS
  Thioredoxin_7  20 vlvffgaswcftCqalerdflsd.eevkaalaekfvllrvdv..terdanileldeqgvPvva 79 
                    +lv f a wc++++al+ +f+ + +e++a     + l +vd   +e  a +  ++  g+P+++
     KOO23010.1  81 MLVQFYAPWCSHSRALAPEFAAAaDELQA-RGLEVRLAKVDAvaEEALADL--FHVAGYPTLL 140
                    6779************9999888344444.445666666665334444333..3336677766 PP

  == domain 2  score: 8.9 bits;  conditional E-value: 0.00048
                    --EEEEE--TT-HHHHHHHHHHHH- CS
  Thioredoxin_7  18 kpvlvffgaswcftCqalerdflsd 42 
                     +vl+ + a wc++C++le + l+ 
     KOO23010.1 498 LDVLLQIFAPWCGHCKKLEPEYLQL 522
                    6799**************9877765 PP

>> AhpC-TSA  AhpC/TSA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.4   0.0   1.5e-05     0.054      28      71 ..      81     123 ..      67     149 .. 0.82
   2 !    4.5   0.0    0.0085        30      23      64 ..     495     535 ..     486     544 .. 0.82

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 1.5e-05
                 EEEEEESTST-CCHHHHHHHHHHCHHHCCCTTEEEEEEESSSCH CS
    AhpC-TSA  28 vvlffypkdwcpvCttelpalaklyeefkergvevigvsvdspe 71 
                 +++ fy+  wc + ++ +p++a++++e+++rg+ev    vd ++
  KOO23010.1  81 MLVQFYAP-WCSHSRALAPEFAAAADELQARGLEVRLAKVDAVA 123
                 46678888.*************************9887777655 PP

  == domain 2  score: 4.5 bits;  conditional E-value: 0.0085
                 HTTSEEEEEEESTST-CCHHHHHHHHHHCHHHCCCTTEEEEE CS
    AhpC-TSA  23 ykgkpvvlffypkdwcpvCttelpalaklyeefkergvevig 64 
                 ++g  v+l +++  wc +C++  p++ +l  +f+e +  vi+
  KOO23010.1 495 VSGLDVLLQIFAP-WCGHCKKLEPEYLQLGVRFAEIKSVVIA 535
                 5666788999999.**************99999987776665 PP

>> Thioredoxin_2  Thioredoxin-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.9   0.0     0.021        74       8      41 ..      81     115 ..      74     150 .. 0.66
   2 !   10.9   0.0   0.00014      0.49       6      57 ..     498     538 ..     494     569 .. 0.64

  Alignments for each domain:
  == domain 1  score: 3.9 bits;  conditional E-value: 0.021
  Thioredoxin_2   8 vlvvftdpdCpyCkklkkelkel.ddvtvrvllfp 41 
                    +lv f++p+C   ++l  e+    d+++ r l + 
     KOO23010.1  81 MLVQFYAPWCSHSRALAPEFAAAaDELQARGLEVR 115
                    57789999999999999988887667766633333 PP

  == domain 2  score: 10.9 bits;  conditional E-value: 0.00014
  Thioredoxin_2   6 kpvlvvftdpdCpyCkklkkelkelddvtvrvllfplkpsfepkavaiwcak 57 
                      vl+ + +p+C+ Ckkl+ e  +l +v++           e+k+v i +++
     KOO23010.1 498 LDVLLQIFAPWCGHCKKLEPEYLQL-GVRFA----------EIKSVVIAKMD 538
                    56888999****************9.55443..........33344444443 PP

>> Thioredoxin_8  Thioredoxin-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.5   0.0    0.0014         5       3      33 ..      80     111 ..      79     132 .. 0.83
   2 ?   -1.4   0.0      0.82   2.9e+03      70      88 ..     123     141 ..     110     144 .. 0.82
   3 !    6.8   0.0    0.0023       8.3       4      36 ..     500     532 ..     499     544 .. 0.82

  Alignments for each domain:
  == domain 1  score: 7.5 bits;  conditional E-value: 0.0014
                    EEEEEE--SSSHHHHHHHHHHHHHHHHHHH.T CS
  Thioredoxin_8   3 vvlLyfgaswcppckaftpklkelyeklkk.k 33 
                    v l+ f+a wc++++a  p+  +  ++l++ +
     KOO23010.1  80 VMLVQFYAPWCSHSRALAPEFAAAADELQArG 111
                    57899****************99999998543 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 0.82
                    -HHHHTT-S--TT-SEEEE CS
  Thioredoxin_8  70 krnklkkkynvkaiPtlvv 88 
                      ++l++ + v ++Ptl++
     KOO23010.1 123 AEEALADLFHVAGYPTLLW 141
                    578999**********987 PP

  == domain 3  score: 6.8 bits;  conditional E-value: 0.0023
                    EEEEE--SSSHHHHHHHHHHHHHHHHHHHTTSE CS
  Thioredoxin_8   4 vlLyfgaswcppckaftpklkelyeklkkkkkv 36 
                    vlL ++a wc +ck+  p+  +l  ++ + k v
     KOO23010.1 500 VLLQIFAPWCGHCKKLEPEYLQLGVRFAEIKSV 532
                    7999**************999987777654444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (601 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       382  (0.0213063); expected 358.6 (0.02)
Passed bias filter:                      294  (0.016398); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.54u 0.23s 00:00:00.77 Elapsed: 00:00:00.41
# Mc/sec: 4403.18
//
Query:       KOO23011.1  [L=140]
Description: hypothetical protein Ctob_006735 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    0.00018   21.0   0.3    0.00031   20.2   0.2    1.3  1  Glyco_transf_29  Glycosyltransferase family 29 (sialyltransfe


Domain annotation for each model (and alignments):
>> Glyco_transf_29  Glycosyltransferase family 29 (sialyltransferase)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.2   0.2   1.7e-08   0.00031     198     238 ..      44      87 ..      37     107 .. 0.77

  Alignments for each domain:
  == domain 1  score: 20.2 bits;  conditional E-value: 1.7e-08
  Glyco_transf_29 198 stGllaltlAlhlCdeVslyGFgpsedse...klslHYydkkkk 238
                      s+G  ++++A++lC++V+lyG g + d     k+ lH+yd++ +
       KOO23011.1  44 SSGGNTMHAAISLCQHVDLYGSGLHSDGAsgdKTYLHFYDESPA 87 
                      8899999*****************5555569999******8433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (140 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       241  (0.0134419); expected 358.6 (0.02)
Passed bias filter:                      220  (0.0122706); expected 358.6 (0.02)
Passed Vit filter:                        10  (0.000557756); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.25s 00:00:00.61 Elapsed: 00:00:00.39
# Mc/sec: 1078.95
//
Query:       KOO23012.1  [L=205]
Description: snRNA-activating protein complex subunit 3-like protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
      1e-24   87.3   0.6    1.2e-24   87.1   0.6    1.1  1  zf-SNAP50_C  snRNA-activating protein of 50kDa MW C terminal
  ------ inclusion threshold ------
       0.14   10.9   0.0       0.19   10.5   0.0    1.1  1  EutB         Ethanolamine ammonia lyase large subunit (EutB)


Domain annotation for each model (and alignments):
>> zf-SNAP50_C  snRNA-activating protein of 50kDa MW C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   87.1   0.6   1.4e-28   1.2e-24      88     198 ..       1     114 [.       1     116 [. 0.93

  Alignments for each domain:
  == domain 1  score: 87.1 bits;  conditional E-value: 1.4e-28
  zf-SNAP50_C  88 meetrfedLelrlgqpylyvHqgnCehlivftdirllhrsd..sqdrsaYPlrlfkkklrrkkCkvCekfsakwvvlndkllpedpsyfCdkCfrslh 183
                  m+ t++ +L++rlg +yl+vH+g+Ceh +vf  + l+++s    ++ +a P  +f++k+   +C vC + +a w v +d +++ +p+y+C++C ++ h
   KOO23012.1   1 MDATTLGSLTIRLGRQYLFVHHGDCEHALVFVACWLASSSSavARQLAAVPCIIFRRKEVPMQCVVCLRAPAVWAVHGDVFADASPCYLCQRCHFHSH 98 
                  8899********************************9966634667799************************************************* PP

  zf-SNAP50_C 184 ydkngekl.gdfkayp 198
                  y+ +ge    d+++yp
   KOO23012.1  99 YTAEGEARrLDYRVYP 114
                  *****98877887777 PP

>> EutB  Ethanolamine ammonia lyase large subunit (EutB)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.0   2.1e-05      0.19     127     188 ..      90     150 ..      69     154 .. 0.85

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 2.1e-05
        EutB 127 akkievvtkfrttiGlkgtlsaRlqPnhptDdvegiaasvldgllygvGDaviGinPasdsv 188
                  ++++ ++++ t  G+  +l  R+ P    Dd ++ +a ++dg   g+GD +  + Pa+ s+
  KOO23012.1  90 CQRCHFHSHY-TAEGEARRLDYRVYPILREDDEDEQRAVLVDGSGDGSGDGMAATDPADASA 150
                 5566555443.678999****************************************99775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (205 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       576  (0.0321267); expected 358.6 (0.02)
Passed bias filter:                      400  (0.0223102); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.38u 0.24s 00:00:00.62 Elapsed: 00:00:00.38
# Mc/sec: 1617.79
//
Query:       KOO23013.1  [L=219]
Description: hypothetical protein Ctob_001042 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      3e-32  110.5   0.7    5.4e-18   64.8   0.2    2.2  2  MtN3_slv  Sugar efflux transporter for intercellular exchange


Domain annotation for each model (and alignments):
>> MtN3_slv  Sugar efflux transporter for intercellular exchange
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.2   0.0   7.9e-16   1.4e-11       6      80 ..      17      91 ..      13      98 .. 0.94
   2 !   64.8   0.2     3e-22   5.4e-18       2      86 ..     134     219 .]     133     219 .] 0.95

  Alignments for each domain:
  == domain 1  score: 44.2 bits;  conditional E-value: 7.9e-16
    MtN3_slv  6 lcvvftvavFlsPlsilrkiikkksveelsfllflagllsallWllYGllkkdaliiivNlvgvlleliylllfl 80
                l++v++ a++ +P+++lr+ ik+ s   ++ l++ + +   + Wl YGl+++d+ i++ N  g+l++l++l++ l
  KOO23013.1 17 LGFVLSSALYCAPVPTLREAIKQGSLGAFNPLPSALMVTATTAWLGYGLSVRDPWIALTNAPGALVALAQLVVIL 91
                6889999***************************************************************99876 PP

  == domain 2  score: 64.8 bits;  conditional E-value: 3e-22
    MtN3_slv   2 llgllcvvftvavFlsPlsilrkiikkksveelsfllflagllsallWllYGllk.kdaliiivNlvgvlleliylllflvyakkk 86 
                  lgl ++++ +a+F+sPl++++ +++ k++e +  +l+ a++ +++lW++YG+l  +d+++  +N+vg++l+li+l l ++++ kk
  KOO23013.1 134 ALGLYATIICIALFASPLATIASVVREKNSESILASLTAAQVANCVLWTTYGVLAaRDPFVWGPNGVGLVLGLIQLALKVCFPAKK 219
                 69**************************************************9852788*********************999886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (219 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       459  (0.025601); expected 358.6 (0.02)
Passed bias filter:                      232  (0.0129399); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.22s 00:00:00.61 Elapsed: 00:00:00.38
# Mc/sec: 1742.99
//
Query:       KOO23014.1  [L=221]
Description: secreted protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (221 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       461  (0.0257125); expected 358.6 (0.02)
Passed bias filter:                      420  (0.0234257); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.41u 0.22s 00:00:00.63 Elapsed: 00:00:00.37
# Mc/sec: 1791.05
//
Query:       KOO23015.1  [L=215]
Description: hypothetical protein Ctob_001027 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.1e-05   25.2   3.3    0.00027   20.7   0.2    2.1  2  Orai-1    Mediator of CRAC channel activity


Domain annotation for each model (and alignments):
>> Orai-1  Mediator of CRAC channel activity
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.7   0.2   1.5e-08   0.00027       3      77 ..      19      89 ..      17      99 .. 0.84
   2 !    5.5   0.4   0.00071        13     116     167 ..     124     172 ..     104     177 .. 0.79

  Alignments for each domain:
  == domain 1  score: 20.7 bits;  conditional E-value: 1.5e-08
      Orai-1  3 elnrrklelsrakLkassrtsALlsgFamvamvelqlkeseekeeeisealliafsvvtavlvavhllallistl 77
                el  ++l+l+++   a++ ++AL+ gF+m a++e++++ +  + +   ++ll +fs++    + + ++a+ i t+
  KOO23015.1 19 ELREKELNLFNENFGAVATQAALMCGFSM-AFLEMSVHLHGIHFNPLAKGLLHIFSTI---SICCNMFAVSIITF 89
                567799**********************9.7789999888889999*********965...56667777666665 PP

  == domain 2  score: 5.5 bits;  conditional E-value: 0.00071
      Orai-1 116 talGillFLvevallswvkFlavssaaalvvtailvpvlilfvvfavhfyrk 167
                 +++G+l  L++va+  w+ +   +++ alv+t++l+ ++ + +  a++ ++k
  KOO23015.1 124 FGVGLLAQLTSVACSTWLLM---QREVALVATVMLMGTCYALLSNALRIFKK 172
                 56799999*********977...56778888888777776666666666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (215 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       555  (0.0309554); expected 358.6 (0.02)
Passed bias filter:                      324  (0.0180713); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.24s 00:00:00.64 Elapsed: 00:00:00.40
# Mc/sec: 1594.89
//
Query:       KOO23016.1  [L=398]
Description: hypothetical protein Ctob_001026 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (398 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       886  (0.0494171); expected 358.6 (0.02)
Passed bias filter:                      483  (0.0269396); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.51u 0.23s 00:00:00.74 Elapsed: 00:00:00.40
# Mc/sec: 2981.65
//
Query:       KOO23017.1  [L=1352]
Description: hypothetical protein Ctob_001029 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1352 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       803  (0.0447878); expected 358.6 (0.02)
Passed bias filter:                      399  (0.0222544); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.82u 0.27s 00:00:01.08 Elapsed: 00:00:00.44
# Mc/sec: 9291.67
//
Query:       KOO23018.1  [L=603]
Description: dead-box ATP-dependent RNA helicase 35-like protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.6e-39  133.7   0.0    5.4e-38  130.5   0.0    2.3  2  DEAD        DEAD/DEAH box helicase
    7.6e-31  106.7   0.0    2.6e-30  105.0   0.0    1.9  1  Helicase_C  Helicase conserved C-terminal domain
       0.01   15.9   0.0      0.025   14.6   0.0    1.7  2  ResIII      Type III restriction enzyme, res subunit
  ------ inclusion threshold ------
      0.026   13.8   0.0      0.052   12.8   0.0    1.5  1  SecA_DEAD   SecA DEAD-like domain
        1.2    9.3   6.2       0.14   12.3   1.2    2.1  2  zf-CCHC     Zinc knuckle


Domain annotation for each model (and alignments):
>> DEAD  DEAD/DEAH box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  130.5   0.0   1.5e-41   5.4e-38       1     174 [.     175     354 ..     175     356 .. 0.93
   2 ?    0.2   0.0      0.16   5.6e+02      33     104 ..     393     460 ..     369     467 .. 0.64

  Alignments for each domain:
  == domain 1  score: 130.5 bits;  conditional E-value: 1.5e-41
                 -HHHHHHHHHHHTTCEEEEEESTTSSHHHHHHHHHHHHHHHS......TTSTS-EEEEEESSHHHHHHHHHHHHHHTTTST......SEEEEEETTSSH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx......xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx......xxxxxxxxxxxx RF
        DEAD   1 tdiQaeaiplilgggdvlvaaeTGsGKTlaflipvlqivyet......kgktgpkalivePtreLaeqtlnnlkkfkkyid......lrvlliiggvaa 87 
                 t+iQ + ip++l g+d+++ a TGsGKTl+f +p++ i +e+       + +gp  li++P+reLa+qt++ +  f+k++       +r+l++igg++ 
  KOO23018.1 175 TPIQIQGIPAVLAGRDLIGIAFTGSGKTLVFTLPMVMIALEEekrmpiSRGEGPFGLILCPSRELARQTFELADHFCKHLAasgtasMRALCTIGGTPL 273
                 89*************************************999999999999***************************755577888************ PP

                 HHHHHHHHTTCSEEEEEHHHHHHHHHCTSSHCTTEEEEEEETHHHHHHT.TTHHHHHHHHHHSHHHCTTSTTTSEEEEEESSBSHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD  88 rdqlskldngvdivvgtpgrlddllstgklnlsqvrflVlDEadrlldq.gfsdfinrilnqlpqitcdgklqrqvivlSATlpkdvk 174
                 ++ql++++ g ++ v+tpgrl d+l++++++l  ++++ lDEadrl  +  f++++++ ++ +       + qrq++++SAT+p +++
  KOO23018.1 274 SEQLETIRLGFHMCVATPGRLNDMLTKKRISLGLCKYMCLDEADRLIGDqAFEEEVRNAMTFF-------EGQRQTLLFSATMPAKIQ 354
                 *************************99******************986559999999988888.......56789********97765 PP

  == domain 2  score: 0.2 bits;  conditional E-value: 0.16
                 HHHHHHHHHSTTSTS-EEEEEESSHHHHHHHHHHHHHHTTTSTSEEEEEETTSSHHHHHHHH...HTT.CSEEEEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxx.xxxxxxx RF
        DEAD  33 ipvlqivyetkgktgpkalivePtreLaeqtlnnlkkfkkyidlrvlliiggvaardqlskl...dng.vdivvgt 104
                 i +l+++    +kt+p +li + t+  + ++++ l  ++k   + +++i gg+++++   ++   ++g  d+++gt
  KOO23018.1 393 IYLLECL----QKTAPPVLIFCETKTECDDIHEYL--MLKG--VAAVAIHGGKEQDEREYAIkmfKEGkKDVLIGT 460
                 3333333....778888888888888888887777..4443..456677787777666666633334468888888 PP

>> Helicase_C  Helicase conserved C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  105.0   0.0   7.2e-34   2.6e-30       3     111 .]     392     498 ..     388     498 .. 0.91

  Alignments for each domain:
  == domain 1  score: 105.0 bits;  conditional E-value: 7.2e-34
                 HHHHHHHHHHTTTTSEEEEEESSHHHHHH.HHHHHHHTTSTEEEESTTSTHHHHHHHHHHHHTTSSSEEEESGGGTSSSTSTTESEEEESSSSSSHHHH CS
  Helicase_C   3 leallellkleeeggkilifvntidrlek.vklllekkgikvavlhgelpqnereeileqfnkgesdvLiatdvaerGidipkvnlVinfdlprnvtsy 100
                 + +lle   l++    +lif++t++++++  ++l   kg+ ++++hg  +q+ere +++ f++g+ dvLi tdva++G+d+p++++Vinfd+p+++++y
  KOO23018.1 392 IIYLLE--CLQKTAPPVLIFCETKTECDDiHEYL-MLKGVAAVAIHGGKEQDEREYAIKMFKEGKKDVLIGTDVASKGLDFPEIQHVINFDMPKEIENY 487
                 444444..5599999************9976666.5779************************************************************ PP

                 HHHHTTSSSTT CS
  Helicase_C 101 iqriGRtgRag 111
                 ++riGRtgR g
  KOO23018.1 488 VHRIGRTGRCG 498
                 *********86 PP

>> ResIII  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.6   0.0   7.1e-06     0.025      31     169 ..     195     349 ..     173     351 .. 0.72
   2 ?   -3.9   0.1       3.3   1.2e+04      35      46 ..     497     508 ..     494     514 .. 0.81

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 7.1e-06
                 ESTTSTHHHHHHHHHHHH-S..............-EEEEESSHHHHHHHH...HHGGGGTGG...........GEEE....ESSS-B--.......-SE CS
      ResIII  31 maTGtGKTlvaaklierllkkgkee.........kflflvprkslleqtl...eefkkflseayke.......igkk....vsgdkkkakekdstnkki 106
                 + TG+GKTlv +  +  ++ +++++           l+l+p+++l  qt    ++f    +  +++        +++    +s++ +      +   ++
  KOO23018.1 195 AFTGSGKTLVFTLPMVMIALEEEKRmpisrgegpFGLILCPSRELARQTFelaDHF---CKHLAASgtasmraLCTIggtpLSEQLE----TIRLGFHM 286
                 46*********7766666665555579*****9777**************555555...4443333333566644442222444444....448999** PP

                 EEEEHHHHHHTH........HHHTTT-SEEEEETGGGTTS.....TTTHHHHHT---.SEEEEEESS- CS
      ResIII 107 lvttiqsldadseeeeeeseellrdrfdviiiDEaHrlgak....kswreilekfke.avllglTATp 169
                 +v+t  +l+  +     ++++ + +  +++  DEa rl ++    +++r+++  f+     l ++AT+
  KOO23018.1 287 CVATPGRLNDML-----TKKRISLGLCKYMCLDEADRLIGDqafeEEVRNAMTFFEGqRQTLLFSATM 349
                 ************.....89999999999***********99333336666666664425668889997 PP

  == domain 2  score: -3.9 bits;  conditional E-value: 3.3
                 STHHHHHHHHHH CS
      ResIII  35 tGKTlvaaklie 46 
                 +GKT va+ +i 
  KOO23018.1 497 CGKTGVATTFIN 508
                 69*****98886 PP

>> SecA_DEAD  SecA DEAD-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0   1.4e-05     0.052      78     119 ..     174     217 ..     116     223 .. 0.74

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 1.4e-05
                 xxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxx RF
   SecA_DEAD  78 hydvQliGglvlhegk..iaemkTGEGKtlvatlpaylnaltgk 119
                 +  +Q+ G  ++  g+  i    TG GKtlv tlp+++ al+++
  KOO23018.1 174 PTPIQIQGIPAVLAGRdlIGIAFTGSGKTLVFTLPMVMIALEEE 217
                 44556665555444433277778******************987 PP

>> zf-CCHC  Zinc knuckle
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.3         1   3.7e+03       5      10 ..     496     501 ..     496     501 .. 0.89
   2 ?   12.3   1.2     4e-05      0.14       2      18 .]     554     570 ..     553     570 .. 0.93

  Alignments for each domain:
  == domain 1  score: -1.7 bits;  conditional E-value: 1
                 SSSSSS CS
     zf-CCHC   5 nCGepG 10 
                 +CG++G
  KOO23018.1 496 RCGKTG 501
                 6***99 PP

  == domain 2  score: 12.3 bits;  conditional E-value: 4e-05
                 CTSSSSSSSSTTTTSTS CS
     zf-CCHC   2 kCynCGepGHiardCpk 18 
                 +C  CG+ GH+   Cpk
  KOO23018.1 554 GCAFCGGLGHRVATCPK 570
                 79*************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (603 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       436  (0.0243181); expected 358.6 (0.02)
Passed bias filter:                      392  (0.021864); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.56u 0.27s 00:00:00.83 Elapsed: 00:00:00.43
# Mc/sec: 4215.29
//
Query:       KOO23019.1  [L=1009]
Description: hypothetical protein Ctob_001038 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.3e-05   23.5   8.0    0.00013   22.2   4.0    3.6  3  HEAT_2    HEAT repeats
  ------ inclusion threshold ------
        5.5    8.0  19.6        1.3    9.9   0.0    5.0  5  HEAT_PBS  PBS lyase HEAT-like repeat


Domain annotation for each model (and alignments):
>> HEAT_2  HEAT repeats
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.2   4.0   1.5e-08   0.00013       8      72 ..     493     563 ..     490     567 .. 0.82
   2 ?   -0.3   0.0      0.16   1.5e+03      19      43 ..     589     620 ..     582     624 .. 0.52
   3 ?   -1.9   0.1      0.53   4.7e+03      45      58 ..     681     694 ..     679     712 .. 0.70

  Alignments for each domain:
  == domain 1  score: 22.2 bits;  conditional E-value: 1.5e-08
      HEAT_2   8 lendpdpevrraairaLgrignpealpaLvelleded..pavRraaaeaLgaig....dpealpaLkelld 72 
                 l  d d   r aa+ aL+++ np+a+ +Lv++++d +   +vR aa+ aL+++     + +a++aL +l++
  KOO23019.1 493 LLFDRDVPSREAAAAALATFPNPTAVHTLVDVARDRSvyFRVRTAAVAALARLTalvsEGAAAEALVALAR 563
                 447888899**************************997779**********99633323556777777665 PP

  == domain 2  score: -0.3 bits;  conditional E-value: 0.16
      HEAT_2  19 aairaLgrignp......ealpaLvell.ede 43 
                 a ++aLg++++        a+++L++l+ e++
  KOO23019.1 589 ALVEALGTCRDAsgftpaGAFELLLQLIdEND 620
                 45566665554433333345666666663333 PP

  == domain 3  score: -1.9 bits;  conditional E-value: 0.53
      HEAT_2  45 pavRraaaeaLgai 58 
                 p vR aaa+ L ++
  KOO23019.1 681 PSVRLAAADCLLRL 694
                 56888888877554 PP

>> HEAT_PBS  PBS lyase HEAT-like repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   0.0   0.00014       1.3       2      26 ..     502     526 ..     501     527 .. 0.91
   2 ?    3.5   5.5     0.016   1.5e+02       1      24 [.     534     561 ..     534     564 .. 0.91
   3 ?    1.6   0.1     0.068   6.1e+02       4      24 ..     589     615 ..     588     618 .. 0.76
   4 ?   -3.1   0.0         2   1.8e+04       4      11 ..     634     641 ..     627     655 .. 0.71
   5 ?   -2.3   0.2       1.2   1.1e+04       1      12 [.     683     694 ..     683     708 .. 0.77

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.00014
                 HHHHHHHHHHCTSGGGHHHHHHHCT CS
    HEAT_PBS   2 RraAakaLgqlgdeeaipaLleaLq 26 
                 R aAa aL+++  + a+ +L+ +  
  KOO23019.1 502 REAAAAALATFPNPTAVHTLVDVAR 526
                 99******************98876 PP

  == domain 2  score: 3.5 bits;  conditional E-value: 0.016
                 HHHHHHHHHHHCTS....GGGHHHHHHH CS
    HEAT_PBS   1 vRraAakaLgqlgd....eeaipaLlea 24 
                 vR aA+ aL++l++     +a++aL+++
  KOO23019.1 534 VRTAAVAALARLTAlvseGAAAEALVAL 561
                 8*****************9999999887 PP

  == domain 3  score: 1.6 bits;  conditional E-value: 0.068
                 HHHHHHHHCTS......GGGHHHHHHH CS
    HEAT_PBS   4 aAakaLgqlgd......eeaipaLlea 24 
                 a ++aLg+++d        a ++Ll++
  KOO23019.1 589 ALVEALGTCRDasgftpAGAFELLLQL 615
                 6799*******8888777777777766 PP

  == domain 4  score: -3.1 bits;  conditional E-value: 2
                 HHHHHHHH CS
    HEAT_PBS   4 aAakaLgq 11 
                 a ++aL++
  KOO23019.1 634 ALLRALAT 641
                 34455555 PP

  == domain 5  score: -2.3 bits;  conditional E-value: 1.2
                 HHHHHHHHHHHC CS
    HEAT_PBS   1 vRraAakaLgql 12 
                 vR aAa  L +l
  KOO23019.1 683 VRLAAADCLLRL 694
                 899999988655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1009 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       528  (0.0294495); expected 358.6 (0.02)
Passed bias filter:                      360  (0.0200792); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.67u 0.28s 00:00:00.95 Elapsed: 00:00:00.45
# Mc/sec: 6774.57
//
Query:       KOO23020.1  [L=422]
Description: hypothetical protein Ctob_001039 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.2e-07   29.4   0.0    7.1e-07   29.0   0.0    1.2  1  GTP_EFTU  Elongation factor Tu GTP binding domain
    6.2e-05   23.1   0.0    0.00012   22.1   0.0    1.4  1  IF-2      Translation-initiation factor 2


Domain annotation for each model (and alignments):
>> GTP_EFTU  Elongation factor Tu GTP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.0   0.0   7.9e-11   7.1e-07      91     136 ..      37      87 ..      28     209 .. 0.74

  Alignments for each domain:
  == domain 1  score: 29.0 bits;  conditional E-value: 7.9e-11
                 HHT-SEEEEEEETTTBSTHHHHHHHHHHHHTTTEEEEEEESCGST.....H CS
    GTP_EFTU  91 lrvlDgavlvvdaveGvepqteevlrlalkegvpiivfiNKmDrl.....k 136
                 +  +D+a+++v+++ G++ qt+evlr + ++g p+ ++++K+D +     +
  KOO23020.1  37 ADGADLALVLVAVDAGIQRQTREVLRRCAARGQPVLFALTKADTAgecrsE 87 
                 5669****************************************9655432 PP

>> IF-2  Translation-initiation factor 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.1   0.0   1.4e-08   0.00012      16     101 ..     295     384 ..     284     387 .. 0.89

  Alignments for each domain:
  == domain 1  score: 22.1 bits;  conditional E-value: 1.4e-08
                 EEEEEESSHHHHHHHHHHHHCTT.SSTEEEECEEEESSB-HHHHHHHHH..ST...EEEEEESSSCTHHHHHCCCCCTSEEEEESSHHHHH CS
        IF-2  16 nviikaDvqGsleAlkeaLekleseevkvkvihsgvGaitesDvelasa..sn...aiiigFnvkvskkakklaekegvkirlynvIYkli 101
                   i+ka   G l+ + ++L++ + +  ++  ++ gvG   +++  +a+   ++   + i+  n+kv ++  + a++ gv+ir+++v  +l+
  KOO23020.1 295 AAILKAQSAGELQGMLDFLASRQ-TGDRLILLSYGVGMPRDEEMLMAKDalEQevpCAIYTLNLKVPPERHRRASSLGVSIREHSVFHELL 384
                 579******************85.666899*****************8855225789*****************************99986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (422 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       377  (0.0210274); expected 358.6 (0.02)
Passed bias filter:                      267  (0.0148921); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.48u 0.28s 00:00:00.76 Elapsed: 00:00:00.44
# Mc/sec: 2858.32
//
Query:       KOO23021.1  [L=182]
Description: hypothetical protein Ctob_001033 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (182 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       353  (0.0196888); expected 358.6 (0.02)
Passed bias filter:                      315  (0.0175693); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.40u 0.24s 00:00:00.64 Elapsed: 00:00:00.40
# Mc/sec: 1364.96
//
Query:       KOO23022.1  [L=248]
Description: dual specificity protein phosphatase 7 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    7.2e-15   55.0   0.0    9.1e-15   54.6   0.0    1.1  1  DSPc            Dual specificity phosphatase, catalytic domai
     0.0057   16.3   0.0     0.0076   15.8   0.0    1.1  1  Y_phosphatase   Protein-tyrosine phosphatase
  ------ inclusion threshold ------
      0.016   15.1   0.1      0.024   14.6   0.1    1.3  1  Y_phosphatase3  Tyrosine phosphatase family


Domain annotation for each model (and alignments):
>> DSPc  Dual specificity phosphatase, catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.6   0.0   1.5e-18   9.1e-15       1     127 [.      68     197 ..      68     203 .. 0.84

  Alignments for each domain:
  == domain 1  score: 54.6 bits;  conditional E-value: 1.5e-18
                 EEEEECCHHC..HHHHHHHTCSEEEEESSSSSECECCTTTTSEEEEEC.CES....STTSCCGGGHHHHHHHHHHHHHTT-EEEEEESSSSSHHHHHHH CS
        DSPc   1 lylgskstas..lallsklgitlvinvtkevpnanalkkseieklrip.ved....ehetkiskyleeavefidkakqkgkkvlVHCqaGisRSatlii 92 
                 +++g++s+a   l+  ++ +it+v+n+t + pn +  ++ + +++r    +      ++  + ++   + +f+d+a + g++vlVHC aG  R +t  +
  KOO23022.1  68 IFVGNESAARgpLSYFKAADITHVVNATDDLPN-F--CDGGVKYMRFHaAHHmrhsGDSRSLLDFVTPLFRFVDEALSAGNNVLVHCLAGAHRAGTTGC 163
                 68899999988889999***********99998.3..456666666663333555566778888999999***************************** PP

                 HHHHHHHTSCHHHHHHHHHHHSTT-SSTHHHHHHH CS
        DSPc  93 aYlmktknlslneayeflkerrpaispnagfirqL 127
                   lm ++ ls+ +a  + ++rrp i+p  g + qL
  KOO23022.1 164 LLLMWKEALSAADATALAQQRRPVINPI-GTLPQL 197
                 **************************97.544444 PP

>> Y_phosphatase  Protein-tyrosine phosphatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.0   1.3e-06    0.0076     155     197 ..     133     171 ..     106     188 .. 0.72

  Alignments for each domain:
  == domain 1  score: 15.8 bits;  conditional E-value: 1.3e-06
                    HHHHHHHHHHHHSTTSS-EEEECSSSSHHHHHHHHHHHHHHHH CS
  Y_phosphatase 155 llklirkvekskeaksgpvvVhCsaGvgRtgtfvaldillqql 197
                    l+++++++     +  + v+VhC aG+ R+gt  +l ++++++
     KOO23022.1 133 LFRFVDEAL----SAGNNVLVHCLAGAHRAGTTGCLLLMWKEA 171
                    333333333....44589**************98888887665 PP

>> Y_phosphatase3  Tyrosine phosphatase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.6   0.1   4.1e-06     0.024     107     143 ..     131     167 ..      87     176 .. 0.81

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 4.1e-06
  Y_phosphatase3 107 kkayrkvfealadeepvlfHCtaGKDRTGvlaallls 143
                     ++ +r v eal + + vl+HC aG  R G +  lll+
      KOO23022.1 131 TPLFRFVDEALSAGNNVLVHCLAGAHRAGTTGCLLLM 167
                     455555556666655****************999997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (248 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       410  (0.022868); expected 358.6 (0.02)
Passed bias filter:                      316  (0.0176251); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.41u 0.22s 00:00:00.63 Elapsed: 00:00:00.37
# Mc/sec: 1986.42
//
Query:       KOO23023.1  [L=557]
Description: hypothetical protein Ctob_001047, partial [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (557 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       404  (0.0225333); expected 358.6 (0.02)
Passed bias filter:                      248  (0.0138323); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.50u 0.26s 00:00:00.76 Elapsed: 00:00:00.41
# Mc/sec: 4067.82
//
Query:       KOO23024.1  [L=222]
Description: had-superfamily subfamily variant 3 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.9e-16   60.1   0.0    4.9e-16   59.3   0.0    1.4  1  HAD_2           Haloacid dehalogenase-like hydrolase
    1.2e-12   48.6   0.3    8.9e-11   42.5   0.3    2.1  1  Hydrolase       haloacid dehalogenase-like hydrolase
    5.7e-09   35.9   0.0    1.2e-08   34.9   0.0    1.5  1  Hydrolase_like  HAD-hyrolase-like
    1.3e-06   29.0   0.0    1.6e-06   28.6   0.0    1.2  1  HAD             haloacid dehalogenase-like hydrolase
  ------ inclusion threshold ------
      0.059   13.8   0.2       0.18   12.2   0.1    1.7  2  DHHA1           DHHA1 domain


Domain annotation for each model (and alignments):
>> HAD_2  Haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.3   0.0   1.4e-19   4.9e-16       1     177 [.       6     187 ..       6     188 .. 0.82

  Alignments for each domain:
  == domain 1  score: 59.3 bits;  conditional E-value: 1.4e-19
       HAD_2   1 iiFDlDgTlldteeliiqafnelleeyglselseeelrkli.glslrellrklgeseeeeekieellrkyneekkk.kevkpydgvkelLeeLkeagyk 97 
                 ii+D Dg l+d+e l+ +a  e+l   g+ +++++++++l+ g s +   +++ ++   +   + ++++  e   +    ++ +   +++  L++ag k
  KOO23024.1   6 IIWDCDGCLVDSEALLKTAEVEALHAAGFLQVTRDDCNRLFsGYSPEAGAKNFLNEFG-KPVPDNFFKDQIEGSIElFRNRLTQLNAKTVLALHAAGRK 103
                 8************************************997725555555555555544.4444444444444444422223333335677789****** PP

       HAD_2  98 lgivTsksreaveekleqlgiesyF...dvivtsedvekk.KPdpeviekaleklklkkeeviyvGDsptDieaakkagikvia 177
                   +++ + r+ v   le  gi+++F   d++ t edv ++ KP+p++++ a    +++++++++v+Ds+++++aa++a ++v++
  KOO23024.1 104 QVVASGSPRDRVLVCLEVAGIDHVFagkDQVFTREDVPGRgKPQPDIFLMAAAAAGVDPSQCVVVEDSTSGVMAAQAAKMEVVG 187
                 *************************88889*******8877***************************************9986 PP

>> Hydrolase  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.5   0.3   2.5e-14   8.9e-11       2     209 ..       4     181 ..       3     182 .. 0.79

  Alignments for each domain:
  == domain 1  score: 42.5 bits;  conditional E-value: 2.5e-14
                 SEEEEESBTTTBCHHHHHHHHHHHHCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHH.ETTTEHHHHTHHHHHHHHHCHHHHHHHHHHHHHHCHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   Hydrolase   2 ktvvfDkdGTLttgepsvedvivsaalalaaaletgsehpigkalvaaakarsgaltgfat.figrgayaigkpewltaldippdlgaaigsaqsqgrt 99 
                 +++++D+dG L+++e  ++++ v+a                     +aa  ++   ++  + f g      g + +l++               +   +
  KOO23024.1   4 DLIIWDCDGCLVDSEALLKTAEVEA--------------------LHAAGFLQVTRDDCNRlFSGY-SPEAGAKNFLNEF-------------GKPVPD 68 
                 6899***********9999999999....................455555555556666612222.3455555555555.............666677 PP

                 HHHHTTHHHHHHHHHHTHHBHTTHHHHHHHHHHTTEEEEEEESSEHHHHHHHHHHTT.GGGESEEEEHHCES....STTTSHHHHHHHHHHHTSTGGGE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxx....xxxxxxxxxxxxxxxxxxxxxxx RF
   Hydrolase 100 vallqaralavftiadplkvkpeaaeavasLkaagievvlltgdnpetaeraanqlG.ddyfdaviasdiet....vakpspegkvaaireLqgkpeev 193
                  +++ +++ + +++  + ++ +  a++v +L+aag + v+++g+ +  +  +++ +G d+ f++++++ + +     +kp p++++ a+   +++p+++
  KOO23024.1  69 NFFK-DQIEGSIELFRN-RLTQLNAKTVLALHAAGRKQVVASGSPRDRVLVCLEVAGiDHVFAGKDQVFTREdvpgRGKPQPDIFLMAAAAAGVDPSQC 165
                 7777.577777777755.4888888********************************9777766666666666779*********************** PP

                 EEEESSHHHHHHHHHT CS
                 xxxxxxxxxxxxxxxx RF
   Hydrolase 194 amVGDgvnDaaalaaA 209
                 ++V+D+  ++ a++aA
  KOO23024.1 166 VVVEDSTSGVMAAQAA 181
                 **************98 PP

>> Hydrolase_like  HAD-hyrolase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.9   0.0   3.3e-12   1.2e-08       3      57 ..     144     197 ..     142     213 .. 0.91

  Alignments for each domain:
  == domain 1  score: 34.9 bits;  conditional E-value: 3.3e-12
                     STTSSHHHHHHHHHH---GGGEEEEES-TTTHHHHHHHCT-EEEEESSSSS-TTT CS
  Hydrolase_like   3 gKPepemydfalevlgsdpeevlmiGDrlatDiagAnnaGwksvLVltGvtrped 57 
                     gKP+p ++ +a+++ g+dp++++++ D+  + + +A++a+++ v  l G +++++
      KOO23024.1 144 GKPQPDIFLMAAAAAGVDPSQCVVVEDS-TSGVMAAQAAKMEVVGFLGGGHAQAE 197
                     9***************************.*******************9999876 PP

>> HAD  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.6   0.0   4.6e-10   1.6e-06       1     146 [.       6     144 ..       6     178 .. 0.74

  Alignments for each domain:
  == domain 1  score: 28.6 bits;  conditional E-value: 4.6e-10
         HAD   1 alfDfDgTLldgdslelllrfllrrgaprlwralreklllalfrellrldraglaelleallagls.eelaaelerfvaevirpklldpgalellaahr 98 
                 +++D Dg L+d++   +ll+  +++ a++++  l+++ +       +++ +ag++++l+++ ++ +   +++++e  + e  r +l +  a+++la  +
  KOO23024.1   6 IIWDCDGCLVDSE---ALLK-TAEVEALHAAGFLQVTRDDCNRLFSGYSPEAGAKNFLNEFGKPVPdNFFKDQIEGSI-ELFRNRLTQLNAKTVLA-LH 98 
                 79**********4...5555.6666666655555555333334447778889999***********999999999999.67777755449******.66 PP

         HAD  99 aaGdrvvvvSgglrplvepllaelgadevlatelevdd.rltge.lgleg 146
                 aaG ++vv Sg++r  v   l+  g+d+v a     +d ++t+e + ++g
  KOO23024.1  99 AAGRKQVVASGSPRDRVLVCLEVAGIDHVFAG----KDqVFTREdVPGRG 144
                 *************************9999999....55677777322222 PP

>> DHHA1  DHHA1 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.0      0.94   3.4e+03      14      32 ..      80      96 ..      56     117 .. 0.56
   2 ?   12.2   0.1   5.1e-05      0.18      73     117 ..     155     196 ..     151     202 .. 0.84

  Alignments for each domain:
  == domain 1  score: -1.6 bits;  conditional E-value: 0.94
                HHHCHHHHHHHHHHHHHHH CS
       DHHA1 14 eleelkealaklkaeelle 32
                el  +++ l++l+a+++l+
  KOO23024.1 80 EL--FRNRLTQLNAKTVLA 96
                33..444444444444432 PP

  == domain 2  score: 12.2 bits;  conditional E-value: 5.1e-05
                 EEEEEEECTEEEEEEEESSHSS-HHHHHHHHHHHTTCCEEEETCE CS
       DHHA1  73 vfvakeegdkvkvsarskkdgvdagelakeaaaklgggGGGHdlA 117
                 +++a+ + +++ v+  s++ gv a+ +ak   + +g+ GGGH++A
  KOO23024.1 155 AAAAGVDPSQCVVVEDSTS-GVMAAQAAKM--EVVGFLGGGHAQA 196
                 3444444449999999**9.**********..**********998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (222 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       357  (0.0199119); expected 358.6 (0.02)
Passed bias filter:                      336  (0.0187406); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.40u 0.25s 00:00:00.65 Elapsed: 00:00:00.39
# Mc/sec: 1705.89
//
Query:       KOO23025.1  [L=426]
Description: hypothetical protein Ctob_001041 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (426 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       482  (0.0268838); expected 358.6 (0.02)
Passed bias filter:                      392  (0.021864); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.45u 0.21s 00:00:00.66 Elapsed: 00:00:00.36
# Mc/sec: 3585.61
//
Query:       KOO23026.1  [L=373]
Description: serine threonine-protein kinase unc-51-like protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.5e-33  116.3   0.0    7.9e-32  110.7   0.0    2.3  2  Pkinase         Protein kinase domain
    7.6e-20   71.3   0.0    4.3e-19   68.8   0.0    2.0  2  Pkinase_Tyr     Protein tyrosine kinase
  ------ inclusion threshold ------
      0.032   14.3   0.0      0.052   13.6   0.0    1.5  1  ATG11           Autophagy-related protein 11
       0.22   10.2   0.0       0.32    9.7   0.0    1.1  1  Pkinase_fungal  Fungal protein kinase


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.2   0.0     0.011        49       1      20 [.      38      57 ..      38      67 .. 0.82
   2 !  110.7   0.0   1.8e-35   7.9e-32      91     264 .]      99     295 ..      86     295 .. 0.88

  Alignments for each domain:
  == domain 1  score: 3.2 bits;  conditional E-value: 0.011
                EEEEEEEEEESSEEEEEEEE CS
     Pkinase  1 yekleklGeGsfGkVykave 20
                y +++ +G+Gsf++Vy  ++
  KOO23026.1 38 YAVERCIGTGSFAQVYLLRR 57
                667899**********9885 PP

  == domain 2  score: 110.7 bits;  conditional E-value: 1.8e-35
                 HHSS--HHHHHHHHHHHHHHHHHHHHTTEE-SS-SGGGEEEE.T................................TTEEEE-SGTTSEESSSSCSBCT CS
     Pkinase  91 rkgslseeeakkiakqilegleylHskgiiHrDlKpeNiLid.e................................kgelKitDFGlakelesssklts 156
                 ++++l++++a+ +a++++ gl yl  ++++HrD+Kp+N+L+                                    + l+i+DFGla+ l+  s +++
  KOO23026.1  99 DRRNLTPKTASLLASELVDGLCYLRVRKLLHRDIKPQNLLLFfPdahedayegalagagavvggasphpvadgsarAARLRIADFGLARALDGASMART 197
                 5678999**********************************85478999999999999999999999998866654444******************** PP

                 TTSCGGGS-HHHHTTSCBSHHHHHHHHHHHHHHHHHSS-STTTSSHHHHHHHHHHTHHHHHHHCTSHH...HHHTTS-HHHHHHHHHHT-SSGCCSTTH CS
     Pkinase 157 fvgtseYlAPEvlkeneyskkvDvWslGvilyelltgkppfsgekgkekvekeldqlekilkilgetkeklpeaseiseeakdllkkllkkdpkkRlta 255
                 ++g++ Y+APE l++++y++++ vWs+Gv l+e+l+g+ p+sg +  e   + +d            + + p    +s  a++ll   l+  p+ R+++
  KOO23026.1 198 VCGSPLYMAPEALRGQPYGAAAEVWSVGVCLFEMLSGRVPYSGATVPE-LLAAIDA---------APRGQPPAVPGVSAAATKLLIAALQPVPEARISI 286
                 ******************************************554444.2333333.........4577899999************************ PP

                 HHHHTSGGG CS
     Pkinase 256 eellqhpyl 264
                 e++  h +l
  KOO23026.1 287 EQMATHAFL 295
                 ******986 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.0      0.24   1.1e+03       4      17 ..      41      54 ..      38      68 .. 0.80
   2 !   68.8   0.0   9.5e-23   4.3e-19      93     256 ..      96     290 ..      54     293 .. 0.88

  Alignments for each domain:
  == domain 1  score: -1.3 bits;  conditional E-value: 0.24
                 EEEEEEESSEEEEE CS
  Pkinase_Tyr  4 gkklGeGafGkVve 17
                 ++ +G G+f++V+ 
   KOO23026.1 41 ERCIGTGSFAQVYL 54
                 6789********96 PP

  == domain 2  score: 68.8 bits;  conditional E-value: 9.5e-23
                  HHTCTTTSBHHHHHHHHHHHHHHHHHHHHTTEEEST-SGGGEEEEE.................................TTEEEE-STTTHEETTTSS CS
  Pkinase_Tyr  93 rkkekekltlkdllsfalqvAkGmeyLeskklvHrdlaarNvLlse.................................nkvvkisDfGLardiekdd 157
                  ++ ++++lt k+   +a ++ +G+ yL  +kl+Hrd+  +N Ll                                       +i+DfGLar++  d 
   KOO23026.1  96 KAIDRRNLTPKTASLLASELVDGLCYLRVRKLLHRDIKPQNLLLFFpdahedayegalagagavvggasphpvadgsarAARLRIADFGLARAL--DG 191
                  44478899999999******************************8778899**************************99899************..55 PP

                  EEEETTSSTSGGGGS-HHHHHHSEEEHHHHHHHHHHHHHHHHTTSSGTTTTSHHHHHHHHHHTTEES-BB..TTSBHHHHHHHHHHT-SSGGGS--HH CS
  Pkinase_Tyr 158 eyvkkeeaklpvkWmapEslkekkftsksDvWsfGvllwEiftlgespypglkneevleklkegkrlekp..ekcpeelyelmkkcweedpeeRptfs 253
                     +++ +  p  +mapE+l+ + +  ++ vWs Gv+l+E+++ g+ py+g +  e+l+++++  r + p    ++++ ++l+   ++  pe R +++
   KOO23026.1 192 ASMARTVCGSP-LYMAPEALRGQPYGAAAEVWSVGVCLFEMLS-GRVPYSGATVPELLAAIDAAPRGQPPavPGVSAAATKLLIAALQPVPEARISIE 287
                  55555655555.59*****************************.*****************887775555116799999*****************99 PP

                  HHH CS
  Pkinase_Tyr 254 elv 256
                  ++ 
   KOO23026.1 288 QMA 290
                  986 PP

>> ATG11  Autophagy-related protein 11
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.0   1.2e-05     0.052      68     128 ..     292     361 ..     122     362 .. 0.75

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 1.2e-05
       ATG11  68 waafnagaphYfLkeeselal.........ksrewlvGrivkieekvvdekdeNpfklskglkwylvkaa 128
                  a + +  p YfL+  se+ l         + +  ++G++v++e+ +++ +++    l  g+ + +++a+
  KOO23026.1 292 HAFLCDAGPPYFLSRASEESLcramhcthaSLPPVAIGKVVHVEKLHASPENAAALGLRPGAPFNVITAE 361
                 6666678899****99999888888888888888*********************************997 PP

>> Pkinase_fungal  Fungal protein kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   0.0   7.1e-05      0.32     325     388 ..     124     212 ..     112     219 .. 0.82

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 7.1e-05
  Pkinase_fungal 325 kagiLHrDiSenNilit............................dskkegerkglLiDLDlakelsddssesgarertGTleFmaievlkg 388
                       ++LHrDi  +N+l+                              + + +  +  ++D+ la  l+    +s ar+  G + +ma e l+g
      KOO23026.1 124 VRKLLHRDIKPQNLLLFfpdahedayegalagagavvggasphpvADGSARAARLRIADFGLARALDG---ASMARTVCGSPLYMAPEALRG 212
                     6799*************999988888888888888888887766644555889999999999999995...666788999999999999986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (373 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       245  (0.013665); expected 358.6 (0.02)
Passed bias filter:                      205  (0.011434); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.45u 0.28s 00:00:00.73 Elapsed: 00:00:00.42
# Mc/sec: 2676.60
//
Query:       KOO23027.1  [L=203]
Description: hypothetical protein Ctob_001030 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    0.00022   21.9   1.8    0.00031   21.4   1.8    1.2  1  Abhydrolase_6  Alpha/beta hydrolase family
  ------ inclusion threshold ------
       0.11   12.1   0.2       0.37   10.3   0.0    1.8  2  DLH            Dienelactone hydrolase family


Domain annotation for each model (and alignments):
>> Abhydrolase_6  Alpha/beta hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.4   1.8   3.5e-08   0.00031      74     216 ..       1     187 [.       1     190 [. 0.47

  Alignments for each domain:
  == domain 1  score: 21.4 bits;  conditional E-value: 3.5e-08
                    CHHHHHHHHHHCC........EEEEES-...............----TTTS----TTHHHHHH........TT-C.CCCHCCH.........S-HS CS
  Abhydrolase_6  74 lGGalalaaapla......lvvgvlldp........pp.....talpagllaaalelllalla........llrl.lawlsre.........plpr 132
                    +GG +a++aa+l       ++++v+++         p+              aale ++ +++        ++++ l w  r+          + r
     KOO23027.1   1 MGGRIAMRAAALDaassepVLRAVVIEDmdlieryaPSktvedR--------AALERFASPGGrrfasweeARAAlLPWYDRDeerinswrnTRVR 88 
                    9*******777778899977777999996655555433332221........22222222222000111111111223332222233333332333 PP

                    CCCCHHH...CCCCHCHCCCGHHHHCCHHCHTTCCHHTT-TTGC....EEEC..TT-C..........HHHHCHHCCCHSTTEEETCE...SSS-H CS
  Abhydrolase_6 133 lfladed...adaawrarlarlaallaglgllpaaawadlpvpl....lvlg..geDp..........lvprllerllaqagarlpvvlpgaGHlp 209
                    ++ ++++   +  + ++rlar + l++++g  +++++a+   +l    +vl+  ++++           + ++  ++ + + a++ + +pgaGH++
     KOO23027.1  89 PIPGGTEvhsDINPAAQRLARERVLASSDGSMAWDELAAHGDSLpfalHVLYadKGERgtvvqiegrgGINDM--KARC-PAAQF-TFFPGAGHSI 180
                    4444444322244444444444455555555555666666666676665663234444653332222211122..3333.55555.********** PP

                    HHHSHHH CS
  Abhydrolase_6 210 hleepde 216
                    h  + ++
     KOO23027.1 181 HRTDQEA 187
                    *966665 PP

>> DLH  Dienelactone hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.0      0.13   1.1e+03     107     119 ..       1      13 [.       1      24 [. 0.86
   2 ?   10.3   0.0   4.1e-05      0.37     168     200 ..     159     191 ..     135     201 .. 0.80

  Alignments for each domain:
  == domain 1  score: -1.1 bits;  conditional E-value: 0.13
         DLH 107 mGGalalllaaev 119
                 mGG++a+  aa +
  KOO23027.1   1 MGGRIAMRAAALD 13 
                 8******999876 PP

  == domain 2  score: 10.3 bits;  conditional E-value: 4.1e-05
         DLH 168 ealkaanvdlelkvYpgagHaFandsresynee 200
                 + +ka+ +++++  +pgagH+ +++++e ++++
  KOO23027.1 159 NDMKARCPAAQFTFFPGAGHSIHRTDQEAFDKQ 191
                 67889999******************9988876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (203 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       441  (0.024597); expected 358.6 (0.02)
Passed bias filter:                      392  (0.021864); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.42u 0.23s 00:00:00.65 Elapsed: 00:00:00.40
# Mc/sec: 1513.28
//
Query:       KOO23028.1  [L=499]
Description: hypothetical protein Ctob_001031 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (499 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       493  (0.0274974); expected 358.6 (0.02)
Passed bias filter:                      408  (0.0227564); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.51u 0.25s 00:00:00.76 Elapsed: 00:00:00.39
# Mc/sec: 3803.31
//
Query:       KOO23029.1  [L=135]
Description: putative nucleotidyltransferase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (135 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       230  (0.0128284); expected 358.6 (0.02)
Passed bias filter:                      226  (0.0126053); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.22s 00:00:00.56 Elapsed: 00:00:00.37
# Mc/sec: 1092.09
//
Query:       KOO23030.1  [L=465]
Description: glutamate-1-semialdehyde -aminomutase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    7.8e-72  242.2   0.1      1e-71  241.8   0.1    1.2  1  Aminotran_3    Aminotransferase class-III
     0.0013   18.0   0.0     0.0019   17.5   0.0    1.2  1  Aminotran_1_2  Aminotransferase class I and II


Domain annotation for each model (and alignments):
>> Aminotran_3  Aminotransferase class-III
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  241.8   0.1   1.2e-75     1e-71      10     335 ..      73     382 ..      66     459 .. 0.91

  Alignments for each domain:
  == domain 1  score: 241.8 bits;  conditional E-value: 1.2e-75
                  CEEEEEEEBTEEEETTS-EEEESSHHHHTTTT-BT-HHHHHHHHHHHTT-S---TTTCEEHHHHHHHHHHHHHCT-..SEEEEESSHHHHHHHHHHHH CS
  Aminotran_3  10 llvitkaeGvyltdvdgkrylDlvssiavvnlGhahPkvvkavkeqaaklshvsfgaltnepalklaekllklapkgldkvflansGseAvetAlKla 107
                  ++v ++a+G+  +dvdg++y+D v+s+ ++++Gha+ +v++a+ke ++k   +sfga    +  +la+ +++++p  +++v + nsG+eA ++ l+l 
   KOO23030.1  73 PVVFDRAKGSKAYDVDGNEYVDYVGSWGPAIVGHADDRVLAAIKETMDKG--TSFGAPCALE-NELAKMVIDAVPS-VEMVRFTNSGTEACMGVLRLM 166
                  48999*********************************************..8998887766.5788999999999.9******************** PP

                  HHHHHHTSHCTT-EEEEETTT---SSHHHHHHSS--TTTTTTCTTB-TSEEEE-TTBGGGTB-HHHHHHHHHHHHHHHHCHTCCCEEEEEE-SCETTT CS
  Aminotran_3 108 rkyarekkatektkiiafkgafHGrtlgalsvtgskkkyktlfgpflpevvrlkypdeevlkeneeeeaalleelealekkkkdevaAvivEpiqgeg 205
                  r+      +t+++kii+f+g++HG+  + l ++gs  +++tl  p +p+v+  + + + v+ +n+      le+++al ++ k e+a+vi+E + g+ 
   KOO23030.1 167 RA------YTKREKIIKFDGCYHGHADAFLVAAGS--GVATLGLPDSPGVTVGASQSTLVATYND------LETVKALFQANKGEIAGVILEGVVGNS 250
                  **......9**************************..8888888888888887777799999999......999************************ PP

                  TSEB--CCHHHHHHHHHHHHT-EEEEE-TTTTT..TTTSSSSGGGGCTS--SEEEE-GGGGTTSS-EEEEEEHHHHTTS-TTS...B--TTTT-HHHH CS
  Aminotran_3 206 GvvvaspeflaklrelckkhdvllivDEvqtGf..GrTGklfAlehagvspDlmtlaKaltgGlplsavlataevmqalapgs...hgsTfgGnplac 298
                  G++v++++fl++lr+lc+++++ll++DEv+tGf  +  G   A +h+g++pDl t++K+++gGlp+ a ++++e+m+++ap +   +++T +Gnpla+
   KOO23030.1 251 GFIVPDKAFLTGLRQLCDDNGALLVFDEVMTGFriSYGG---AQQHWGITPDLSTFGKVIGGGLPVGAYAGKREIMEMVAPAGpmyQAGTLSGNPLAM 345
                  *********************************777778...***************************************99999************ PP

                  HHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHCTT- CS
  Aminotran_3 299 avalavleiieeekllenaqelgaalkegLeelqkky 335
                  ++ +++l+i+ +    e  ++  ++l +g  ++ k+ 
   KOO23030.1 346 RAGIETLKILRQPGSYEYLDKQTKKLIDGILAAGKAA 382
                  ************9999999999999999888877665 PP

>> Aminotran_1_2  Aminotransferase class I and II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5   0.0   2.1e-07    0.0019      74     334 ..     153     434 ..     106     457 .. 0.67

  Alignments for each domain:
  == domain 1  score: 17.5 bits;  conditional E-value: 2.1e-07
                    ESHHHHHHHHHHHHHHHTTT-EEEEEESS-THHHHHHHHTTSE.EEEEEBEET.........TTTEE-HHHHHHHHTTHHCTTETEEEEEEESS-T CS
  Aminotran_1_2  74 gsGagaliealifllklnpgdeilvpdptyasyknilrlsgge.vvryplyse.........edfhldlealeealkeapegnkktkvilvesphN 159
                     sG+ a+  +l  +  + + ++i+ +d  y  + +++  + g  v +  l ++          +   + ++le+  + +++++ ++ ++++e++  
     KOO23030.1 153 NSGTEACMGVLRLMRAYTKREKIIKFDGCYHGHADAFLVAAGSgVATLGLPDSpgvtvgasqSTLVATYNDLETVKALFQANKGEIAGVILEGVVG 248
                    45555555555544445555556666666666665554444444888887777777776666555555566665444444444467********** PP

                    TT--.B--HHHHHHHHHHHHHTTEEEEEEETTTTCBSSSSHTHHHHGGSTTSTTEEEEEESSSTTSSGGG-EEEEEEEHHHHHHHHHHHHHHTS.S CS
  Aminotran_1_2 160 PtGt.vatleeleklldlakkynlllfvDeaYagfvfgsldavatranveeepnllivgslsKafGlaGeRvGyilgnaavvsqlrklsrpfls.s 253
                    ++G  v++++ l+ l +l++ +++ll++De+  gf     +a++ + ++ ++     +++++K  G  G+ vG+ +g+ ++ + ++ +   +   +
     KOO23030.1 249 NSGFiVPDKAFLTGLRQLCDDNGALLVFDEVMTGFRISYGGAQQ-HWGITPD-----LSTFGKVIG-GGLPVGAYAGKREIMEMVAPAGPMYQAgT 337
                    ***725778899**********************9988444444.5555554.....669999998.47788999999999999988877777799 PP

                    HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS....TEEEECCS.CSSEEEEEETHH..........CHHHHHHH.........HH CS
  Aminotran_1_2 254 sllqaavaaalsdallkqseleemrqrlqkrrkelrdeLael....glkvlasq.sgmflltdlsae..........takelskk.........Ll 325
                     ++ ++++ a   +l++  +   + + l k++k+l d++ ++    g +v++ + sgmf +  ++            +                +l
     KOO23030.1 338 LSGNPLAMRAGIETLKIL-RQPGSYEYLDKQTKKLIDGILAAgkaaGHAVTGGHiSGMFGFFFCEGPvkcfadaaksD------TdkfarwhrgML 426
                    999999999999988876.44555555555555555555444455599999999999999988888866776644432......133444688899 PP

                    HTCTEEEEE CS
  Aminotran_1_2 326 eevgvyvtp 334
                    e+ gvy+ p
     KOO23030.1 427 ER-GVYLAP 434
                    99.999988 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (465 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       346  (0.0192983); expected 358.6 (0.02)
Passed bias filter:                      297  (0.0165653); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.50u 0.28s 00:00:00.78 Elapsed: 00:00:00.44
# Mc/sec: 3151.96
//
Query:       KOO23031.1  [L=404]
Description: DNA repair protein rad16 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.1e-13   50.6   0.0    1.6e-13   50.1   0.0    1.2  1  SNF2_N      SNF2 family N-terminal domain
    5.9e-07   29.8   0.0    1.1e-06   28.9   0.0    1.4  1  Helicase_C  Helicase conserved C-terminal domain


Domain annotation for each model (and alignments):
>> SNF2_N  SNF2 family N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.1   0.0   1.8e-17   1.6e-13      99     275 ..      56     220 ..      18     264 .. 0.80

  Alignments for each domain:
  == domain 1  score: 50.1 bits;  conditional E-value: 1.8e-17
                 EEEE--HHHHHHHHHHHHHH-TTS-EEE--SSHHHH-----------------EEEE-HHHHHHHT......TTS-S-S-SEEEES-GG...GT--TTS CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxx RF
      SNF2_N  99 tLivvPaslldqWeneierhvsssalrvlvyggqkkmkkkntkvapklladydvvittYdvlsreaelqkkrsvlkqvewkrvvlDEgh...tlknsts 194
                 t+++   +ll qW++e++++++s ++r ++++ +    +k      + l ++dvv+ t  +  +        +  k ++ +r+++DE+h    +   ts
  KOO23031.1  56 TVVLTTNALLGQWQDELAKFAPSLRVRWYYGTTK----PK----IYADLMNTDVVLSTHGTTMFTD---GGHHMGKYIRVHRIIIDECHgrdAIAHATS 143
                 55555569******************99999885....45....56778999*******9999777...34445567899*********4333555589 PP

                 HHHHHHHH--....-S-EEEE-S--SSS-HHHHHHHHHHH-TTTT--HHHHHHHTHHHHHHHHHHHHHHHHTT-STTEE---GGG CS
                 xxxxxxxxxx....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
      SNF2_N 195 kaaeavskLs....tsnrwiltGTPiqnsledlygLlkfLreepfgekqtfdkllqrpieaqaekgrsrLlqllqrlmlrrakkd 275
                 +++e +   +     +  w +tGTP++ s++dly + ++++         +d +lq    + ++ +rs+L  +lqrlm+r++k++
  KOO23031.1 144 SLRERATGSEsmggFRFAWGVTGTPLSSSVKDLYKMADLIG--------QWDGGLQLRKYHDDDSCRSELPGVLQRLMIRHTKAQ 220
                 988887643322234667******************99997........599999999999**********************86 PP

>> Helicase_C  Helicase conserved C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.9   0.0   1.2e-10   1.1e-06      15     111 .]     239     353 ..     227     353 .. 0.82

  Alignments for each domain:
  == domain 1  score: 28.9 bits;  conditional E-value: 1.2e-10
                 TTSEEEEEESSHHHHHH.HHHHHHHTTSTEEEESTTSTHHHHHHHHHHHHTTS.................SS.EEEESGGGTSSSTSTTESEEEESSSS CS
  Helicase_C  15 eggkilifvntidrlek.vklllekkgikvavlhgelpqnereeileqfnkge.................sd.vLiatdvaerGidipkvnlVinfdlp 94 
                     +++f++  d     +k l  + g+ v+ ++g  +++er +++++f++                    + ++ + +++  G++++ ++ V  ++++
  KOO23031.1 239 PALHAVVFTHHLDAYAAiTKRL-AEAGFVVCGFTGGVSAKERHRSIREFQESAeacaahgkgakkakvtpPKvFVATMKAGNVGMTLTAATRVYLMEPC 336
                 5556789999999554345555.3559**********************854478999999********95626666688999**************** PP

                 SSHHHHHHHHTTSSSTT CS
  Helicase_C  95 rnvtsyiqriGRtgRag 111
                  +++  +q++GR++R g
  KOO23031.1 337 LDPSMEVQAAGRIHRLG 353
                 ***************86 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (404 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       461  (0.0257125); expected 358.6 (0.02)
Passed bias filter:                      413  (0.0230353); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.52u 0.25s 00:00:00.77 Elapsed: 00:00:00.43
# Mc/sec: 2803.11
//
Query:       KOO23032.1  [L=453]
Description: putative tubulin polyglutamylase ttll1 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      5e-95  318.0   0.0    7.1e-95  317.5   0.0    1.1  1  TTL              Tubulin-tyrosine ligase family
    9.9e-08   31.5   0.1     0.0002   20.7   0.0    2.7  2  ATPgrasp_YheCD   YheC/D like ATP-grasp
    7.2e-06   25.5   0.0     0.0031   16.8   0.0    2.2  2  ATPgrasp_ST      Sugar-transfer associated ATP-grasp
  ------ inclusion threshold ------
       0.13   12.3   0.0       0.22   11.6   0.0    1.4  1  Peptidase_M61_N  Peptidase M61 N-terminal domain


Domain annotation for each model (and alignments):
>> TTL  Tubulin-tyrosine ligase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  317.5   0.0   1.6e-98   7.1e-95       8     290 ..      57     353 ..      51     357 .. 0.98

  Alignments for each domain:
  == domain 1  score: 317.5 bits;  conditional E-value: 1.6e-98
                 -SS-SSS--EEEE--------------------.................-------TTHHHHHHHTTTS--S-B----SS---XX------BSSTHHH CS
         TTL   8 dqllnhfpnsseitrkdllvknlkrtkkklekk...............lkflprtfvlpadlaefveeaekeesntwIvKpsasarGkgirvfnkledi 91 
                  q++ hfpn++e+trkdl+vkn+kr++k+ e+                l+++p+t +lp+d   fvee++k++s +wI+Kp+++++Gkgi+++nkl+++
  KOO23032.1  57 GQVISHFPNHYELTRKDLMVKNIKRYRKEVERTwleridgasglpmpdLDIIPTTLLLPNDFSLFVEEYKKSPSLMWIMKPTSKCQGKGIFIINKLAQV 155
                 699************************************************************************************************ PP

                 HHH.....HH..SSS-EEEEB--SSB--BTTEEEEEEEEEEE-..TT-XXXXXXXXXXXXXXXXXX..XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
         TTL  92 kki.....vsqsqkeplvvqkYierPLLidgrKFDlRlyvlvtsvnpLrvYvYkegllRfasvkYspsvsdlddlevHLTNysiqkkskslneesnekk 185
                 kk+      + ++++ +v+++Yi++PLLi+g+KFDlR+yvlvts++pL+vY+Y+ g++Rf +v Ys+   dld++ +HLTN++iqk+    +e +++ +
  KOO23032.1 156 KKWaasrsAQLASRDAYVISRYINDPLLIGGKKFDLRIYVLVTSYRPLKVYIYRHGFARFTTVNYSNDAHDLDNELMHLTNVAIQKH----SEGYSHSH 250
                 ******988888999************************************************************************....9******* PP

                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX..XXXXXXXXXXXXXXXXXXXX. CS
         TTL 186 gkkwslqelekyleevrkeeiweeiesiiiktilaaeveasrlnvqrlkncfelyGvDilidenlkpwLlEvNasPdlksttkldaelkeeliddvlnl 284
                 g+kwsl++l+ y e +r++e   ++   i + i+++ ++a++ ++ ++k+cfe+yG+Dilid+ lkpwLlEvNasP+l++tt+ d+ lk+ li++v++ 
  KOO23032.1 251 GGKWSLRNLRLYVEGTRGTEAAVKLMADIGWIIIHS-LKAVQNVIINDKHCFEMYGYDILIDSSLKPWLLEVNASPSLSTTTATDRALKTALISEVID- 347
                 ************************************.*************************************************************. PP

                 XXXXXX CS
         TTL 285 vvvppd 290
                 +v pp+
  KOO23032.1 348 IVLPPS 353
                 888876 PP

>> ATPgrasp_YheCD  YheC/D like ATP-grasp
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.0   0.0   0.00033       1.5      29      71 ..     108     154 ..     105     200 .. 0.70
   2 !   20.7   0.0   4.6e-08    0.0002     202     247 ..     298     343 ..     239     349 .. 0.73

  Alignments for each domain:
  == domain 1  score: 8.0 bits;  conditional E-value: 0.00033
  ATPgrasp_YheCD  29 LPetellesledleemlekyks.....vylKpanGskGkgilriek.ee 71 
                     +P t ll  ++d+  ++e+yk+      ++Kp++ ++Gkgi+ i+k ++
      KOO23032.1 108 IPTTLLL--PNDFSLFVEEYKKspslmWIMKPTSKCQGKGIFIINKlAQ 154
                     6666666..77777777777764444458****************9312 PP

  == domain 2  score: 20.7 bits;  conditional E-value: 4.6e-08
  ATPgrasp_YheCD 202 grlgEl.GlDlgidkegkvWllEvNskpgrsifkeagdkeaarksvk 247
                     ++++E+ G D+ id++ k WllEvN+ p+ s+ + + d++++ ++++
      KOO23032.1 298 KHCFEMyGYDILIDSSLKPWLLEVNASPSLSTTTAT-DRALKTALIS 343
                     45556559**********************988855.4466655555 PP

>> ATPgrasp_ST  Sugar-transfer associated ATP-grasp
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.4   0.0    0.0011       4.7      48      92 ..     114     162 ..      88     190 .. 0.70
   2 !   16.8   0.0   6.8e-07    0.0031     240     279 ..     299     337 ..     288     345 .. 0.84

  Alignments for each domain:
  == domain 1  score: 6.4 bits;  conditional E-value: 0.0011
  ATPgrasp_ST  48 eiseleafvkeleeg....vviKpakgsgGkGilviteredqdylkssg 92 
                    ++++ fv+e+++      ++Kp+    GkGi +i++  + ++ ++s 
   KOO23032.1 114 LPNDFSLFVEEYKKSpslmWIMKPTSKCQGKGIFIINKLAQVKKWAASR 162
                  456666777777666667789***************9866554444333 PP

  == domain 2  score: 16.8 bits;  conditional E-value: 6.8e-07
  ATPgrasp_ST 240 pglgylGwDivldeekgplllElNarpglaivqiangegl 279
                  ++  + G Di +d + +p llE+Na p+l+    a ++ l
   KOO23032.1 299 HCFEMYGYDILIDSSLKPWLLEVNASPSLST-TTATDRAL 337
                  567899***********************99.55555555 PP

>> Peptidase_M61_N  Peptidase M61 N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0     5e-05      0.22     107     161 ..     256     312 ..     213     314 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 5e-05
  Peptidase_M61_N 107 gaslflyvegleekpievtlslpkgwkvataLpaaeeda..gtgtfeaedydeLvDs 161
                        +l lyveg + ++ +v+l    gw +  +L+a+++    +++ fe+  yd L+Ds
       KOO23032.1 256 LRNLRLYVEGTRGTEAAVKLMADIGWIIIHSLKAVQNVIinDKHCFEMYGYDILIDS 312
                      56788******************************99556799*************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (453 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       404  (0.0225333); expected 358.6 (0.02)
Passed bias filter:                      346  (0.0192983); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.49u 0.27s 00:00:00.76 Elapsed: 00:00:00.42
# Mc/sec: 3216.02
//
Query:       KOO23033.1  [L=94]
Description: enhancer of yellow 2 transcription factor-like protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.2e-29  101.7   0.8    2.7e-29  101.4   0.8    1.0  1  EnY2       Transcription factor e(y)2
  ------ inclusion threshold ------
      0.046   13.5   0.0      0.063   13.0   0.0    1.3  1  AAA_lid_4  RuvB AAA lid domain


Domain annotation for each model (and alignments):
>> EnY2  Transcription factor e(y)2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  101.4   0.8     3e-33   2.7e-29       1      83 [.       8      89 ..       8      89 .. 0.96

  Alignments for each domain:
  == domain 1  score: 101.4 bits;  conditional E-value: 3e-33
                HHHHHHHHHHTTHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH..HTSS.CHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH CS
        EnY2  1 kakiqqkLvesGererlkelLrerLeesGWrdevkelckeiirekgleeevsveelveeitpkaralVPdevkkellqrIref 83
                k+ iq kL+++Ge++rlke+Lr++L+++GWrd++ke++ e ir+kg+ + ++ve+l +ei p++r++VPde+k+ellqrIr f
  KOO23033.1  8 KNSIQMKLEQTGEYDRLKEHLRQKLIDCGWRDRLKEHTMELIRSKGDTT-MTVEQLTQEIIPRGRGTVPDEIKQELLQRIRRF 89
                578****************************************988777.*******************************87 PP

>> AAA_lid_4  RuvB AAA lid domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.0   7.1e-06     0.063      23      52 ..      60      91 ..      42      94 .] 0.82

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 7.1e-06
   AAA_lid_4 23 eegaaeiarRsRGT.P.RianrLLrRvrDfaq 52
                e+ ++ei  R RGT P  i + LL+R+r fa+
  KOO23033.1 60 EQLTQEIIPRGRGTvPdEIKQELLQRIRRFAE 91
                455789********7447************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (94 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       850  (0.0474092); expected 358.6 (0.02)
Passed bias filter:                      530  (0.029561); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.37u 0.24s 00:00:00.61 Elapsed: 00:00:00.39
# Mc/sec: 723.31
//
Query:       KOO23034.1  [L=263]
Description: hypothetical protein Ctob_001741 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.2e-05   23.7   0.1    5.8e-05   22.9   0.1    1.4  1  Chromo    Chromo (CHRromatin Organisation MOdifier) domain


Domain annotation for each model (and alignments):
>> Chromo  Chromo (CHRromatin Organisation MOdifier) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.9   0.1   3.2e-09   5.8e-05       5      52 ..      39      83 ..      35      85 .. 0.79

  Alignments for each domain:
  == domain 1  score: 22.9 bits;  conditional E-value: 3.2e-09
                EEEEEEEETTEECEEEEEEETTSTG..GGT.EEEEGGGCSSHSHHHHHHHH CS
      Chromo  5 rIidhrtdkdgleleYlVKWkglpy..sen.tWEpeenlekcfqelideFk 52
                +I+d+r +k+ +   YlVKW + p   +++ +WEp++n++   + li e++
  KOO23034.1 39 EILDKRNRKGIQ---YLVKWADGPNgeKYEpSWEPKANVGL--P-LITEYE 83
                577777777776...*******999887778********93..4.688887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (263 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       453  (0.0252663); expected 358.6 (0.02)
Passed bias filter:                      367  (0.0204696); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.26s 00:00:00.70 Elapsed: 00:00:00.42
# Mc/sec: 1862.68
//
Query:       KOO23035.1  [L=439]
Description: hypothetical protein Ctob_001740 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    5.9e-06   26.9   0.1    1.2e-05   25.9   0.1    1.5  1  Methyltransf_25  Methyltransferase domain
    0.00042   20.3   0.1    0.00065   19.6   0.1    1.2  1  Methyltransf_18  Methyltransferase domain
     0.0065   17.1   0.1      0.012   16.3   0.1    1.4  1  Methyltransf_11  Methyltransferase domain
     0.0071   16.2   0.0      0.011   15.6   0.0    1.3  1  Methyltransf_23  Methyltransferase domain
     0.0091   16.7   0.0      0.021   15.6   0.0    1.6  1  Methyltransf_12  Methyltransferase domain
  ------ inclusion threshold ------
       0.01   15.7   1.0      0.016   15.0   1.0    1.3  1  Methyltransf_31  Methyltransferase domain
        0.1   12.2   0.3       0.18   11.4   0.3    1.3  1  MetW             Methionine biosynthesis protein MetW
       0.59    7.8   8.1        1.3    6.8   0.1    2.0  2  Retinal          Retinal protein


Domain annotation for each model (and alignments):
>> Methyltransf_25  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.9   0.1   5.5e-09   1.2e-05       1      83 [.     274     362 ..     274     371 .. 0.75

  Alignments for each domain:
  == domain 1  score: 25.9 bits;  conditional E-value: 5.5e-09
                      EEEET-TTSHHHHHHHCTSTSSEEEEEESSHHHHHHHHHHHHHTTT.......TEEEEESBCCGBSSSTTTEEEEEEEST.GGGSSHHHHH CS
  Methyltransf_25   1 vLdlGcGtGrltlalakrlgkakvtgvDiseemleaareraeeegl.......nvefvqgdaedlpfedgsfDlvvssga.lhhlsdedle 83 
                      v dlGcG   l+  l ++ g ++ +g+D++ e+l++ar+r++++++       ++ ++   +++  fe  ++ lv+++ + l+ l  +dl+
       KOO23035.1 274 VCDLGCGDASLLCTLVRQTG-CSAIGCDVNGELLARARARIADDDAcasrivlSCALLADFMHSAAFEPTTVLLVFLVPQqLEALA-PDLR 362
                      78****************98.*********************97776663333333333333455688888888888777777776.3444 PP

>> Methyltransf_18  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.6   0.1   2.9e-07   0.00065      12      62 ..     268     317 ..     259     332 .. 0.84

  Alignments for each domain:
  == domain 1  score: 19.6 bits;  conditional E-value: 2.9e-07
  Methyltransf_18  12 vekgsrvaDiGtDHgylpiylvkegkakkviasDinegplekakeniekag 62 
                      ++ +++v+D G+  + l + lv++  + ++i +D+n + l++a++ i++ +
       KOO23035.1 268 ITASDVVCDLGCGDASLLCTLVRQTGC-SAIGCDVNGELLARARARIADDD 317
                      566899****************99998.99***************998754 PP

>> Methyltransf_11  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.1   5.3e-06     0.012       2      43 ..     276     318 ..     275     349 .. 0.82

  Alignments for each domain:
  == domain 1  score: 16.3 bits;  conditional E-value: 5.3e-06
                      EET-TTSHHHHHHH.HTTSEEEEEES-HHHHHHHHHHCCHHT- CS
  Methyltransf_11   2 dvGcGtGrlaeala.krgarvvgvDlskemlklakekaseegl 43 
                      d+GcG  +l++ l  ++g++ +g+D++ e+l++a++++ +++ 
       KOO23035.1 276 DLGCGDASLLCTLVrQTGCSAIGCDVNGELLARARARIADDDA 318
                      9****9999999995556*******************999886 PP

>> Methyltransf_23  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.0   4.9e-06     0.011      20      62 ..     268     319 ..     246     377 .. 0.77

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 4.9e-06
  Methyltransf_23  20 lraggrvLdiGcGtG.illevlrengfsvtgvDlspeaveiae........k 62 
                        a+  v+d+GcG+   l+ + r+ g+s +g D + e+ ++a+         
       KOO23035.1 268 ITASDVVCDLGCGDAsLLCTLVRQTGCSAIGCDVNGELLARARariadddaC 319
                      667789*********5577777*************99999988444443330 PP

>> Methyltransf_12  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.0   9.3e-06     0.021       2      45 ..     276     318 ..     275     349 .. 0.92

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 9.3e-06
  Methyltransf_12   2 eiGcGtGsllralleklpdieytgvDispsaiedakeklakren 45 
                      ++GcG++sll  l ++  +++ +g+D++ + +++a++++a+ ++
       KOO23035.1 276 DLGCGDASLLCTLVRQ-TGCSAIGCDVNGELLARARARIADDDA 318
                      89**************.9********************998765 PP

>> Methyltransf_31  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.0   1.0   7.2e-06     0.016       4      50 ..     271     315 ..     268     319 .. 0.86

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 7.2e-06
  Methyltransf_31   4 glrvlDlGCGtGeltfelaeelgpkaevvGiDiseeaielArenaqk 50 
                        +v+DlGCG   l+  l ++  +++  +G D + e + +Ar++ ++
       KOO23035.1 271 SDVVCDLGCGDASLLCTLVRQ--TGCSAIGCDVNGELLARARARIAD 315
                      5689*********99999965..4689***************98765 PP

>> MetW  Methionine biosynthesis protein MetW
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.3   8.1e-05      0.18      11      54 ..     268     311 ..     260     315 .. 0.85

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 8.1e-05
        MetW  11 ikpgsrvldlGcGdGellellkeekqvdgrGleldeegvaecva 54 
                 i +   v dlGcGd +ll  l  + + ++ G +++ e +a++ a
  KOO23035.1 268 ITASDVVCDLGCGDASLLCTLVRQTGCSAIGCDVNGELLARARA 311
                 55667799*************999*****999998887777665 PP

>> Retinal  Retinal protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.2   3.8    0.0065        15    1064    1159 ..     156     254 ..     150     263 .. 0.71
   2 ?    6.8   0.1   0.00056       1.3     484     525 ..     387     428 ..     381     434 .. 0.87

  Alignments for each domain:
  == domain 1  score: 3.2 bits;  conditional E-value: 0.0065
     Retinal 1064 sPpasprvlspptskkrtsppaqhklpspp...kesspaqeklsspptqrteasspsslpsssppvspsqgskesrdseds.eaatakasgntcsif 1156
                  sP +    l++p     +sp  + +l +p+   ++s++ + + + p   +  a +pss ++   p  p+   + ++   d   +  a+  gn    f
  KOO23035.1  156 SPEV-EIHLAAPMRIDPQSPEVEIHLAAPMridPQSPEVEIHSAPPMRIEAAAAPPSSSAAHHGPWMPPSMARANKGASDWaAELGARIQGNSFAPF 251 
                  5555.44566777778999999999999996666666665555555555555678888888888888888788777777752556788899988888 PP

     Retinal 1157 cpa 1159
                  +p 
  KOO23035.1  252 VPT 254 
                  886 PP

  == domain 2  score: 6.8 bits;  conditional E-value: 0.00056
     Retinal 484 tpslsededsseeeeedevsstslsaeqekalpsRPqssPas 525
                   s+ ++e ss++e+ede ss sl ++++    +  +ssPa 
  KOO23035.1 387 RGSIGDEEGSSSSEDEDESSSSSLAHTTRMDDAPAWTSSPAY 428
                 5688999****9****************99999999****96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (439 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       285  (0.015896); expected 358.6 (0.02)
Passed bias filter:                      218  (0.0121591); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.50u 0.26s 00:00:00.76 Elapsed: 00:00:00.43
# Mc/sec: 3078.07
//
Query:       KOO23036.1  [L=733]
Description: hypothetical protein Ctob_001733 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
      1e-68  225.5  23.5    1.9e-09   38.0   0.2    7.6  7  WD40            WD domain, G-beta repeat
    1.4e-27   97.2   0.0    2.8e-27   96.2   0.0    1.5  1  Chloroa_b-bind  Chlorophyll A-B binding protein
    9.1e-21   74.2   6.3      0.099   11.6   0.0    7.1  7  Ge1_WD40        WD40 region of Ge1, enhancer of mRNA-decappin
    6.1e-17   61.7   5.4      0.016   15.5   0.1    6.7  7  ANAPC4_WD40     Anaphase-promoting complex subunit 4 WD40 dom
    1.9e-13   50.0   7.0       0.78    9.8   0.0    7.5  7  PD40            WD40-like Beta Propeller Repeat
    7.3e-10   37.8   0.1       0.64    8.3   0.0    5.4  6  Frtz            WD repeat-containing and planar cell polarity
      2e-06   27.4   0.2        1.7    7.9   0.1    4.1  4  WD40_like       WD40-like domain
      4e-06   26.8   0.0        3.6    7.8   0.0    5.7  6  DCX             Doublecortin
      7e-05   23.0   4.4         13    6.0   0.0    5.4  5  Dfp1_Him1_M     Dfp1/Him1, central region
    0.00073   19.0   6.6        7.6    5.8   0.0    5.4  6  Nbas_N          Neuroblastoma-amplified sequence, N terminal
  ------ inclusion threshold ------
        0.2   11.7   0.0         87    3.3   0.0    3.7  4  DpaA_N          Dipicolinate synthase subunit A N-terminal do
       0.23   10.9   6.4         23    4.4   0.0    5.3  7  rOmpB           Rickettsia outer membrane protein B


Domain annotation for each model (and alignments):
>> WD40  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.3   0.2   4.4e-12   6.6e-09       4      38 .]     124     160 ..     121     160 .. 0.85
   2 !   32.5   0.1   6.6e-11   9.9e-08       8      37 ..     172     202 ..     166     203 .. 0.91
   3 !   33.0   0.1   4.7e-11   7.1e-08       8      38 .]     215     246 ..     208     246 .. 0.88
   4 !   34.4   0.9   1.7e-11   2.5e-08       9      38 .]     259     289 ..     252     289 .. 0.90
   5 !   38.0   0.2   1.3e-12   1.9e-09       8      38 .]     301     332 ..     294     332 .. 0.91
   6 !   32.2   0.1   8.5e-11   1.3e-07       8      38 .]     344     375 ..     336     375 .. 0.89
   7 !   30.4   0.0   3.2e-10   4.7e-07       8      38 .]     387     418 ..     380     418 .. 0.88

  Alignments for each domain:
  == domain 1  score: 36.3 bits;  conditional E-value: 4.4e-12
                 EEE.EESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40   4 lrt.ltGH.ssvtslafspdgawlasGsdDgtvriWd 38 
                 l++   +H s+v s+afspdg+ ++sGs+D+t++iWd
  KOO23036.1 124 LTEkTNAHsSWVMSVAFSPDGTKIVSGSEDKTIKIWD 160
                 5552349*777*************************9 PP

  == domain 2  score: 32.5 bits;  conditional E-value: 6.6e-11
                 ESS.SSEEEEEEETTSSEEEEEETTSEEEEE CS
        WD40   8 tGH.ssvtslafspdgawlasGsdDgtvriW 37 
                  +H s+v s+afspdg+ ++sGs+D+t+++W
  KOO23036.1 172 NAHsSWVMSVAFSPDGTKIVSGSRDRTIKVW 202
                 48*777************************* PP

  == domain 3  score: 33.0 bits;  conditional E-value: 4.7e-11
                 ESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40   8 tGH.ssvtslafspdgawlasGsdDgtvriWd 38 
                  +H ++v s+afspdg+ ++sGs+D+t+++Wd
  KOO23036.1 215 NAHsDCVASVAFSPDGTKIVSGSYDKTIKVWD 246
                 589555*************************9 PP

  == domain 4  score: 34.4 bits;  conditional E-value: 1.7e-11
                 SSSS.EEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40   9 GHss.vtslafspdgawlasGsdDgtvriWd 38 
                 +Hss ++s+afspdg+ ++sGs D+t+++Wd
  KOO23036.1 259 AHSSvIWSVAFSPDGTKIVSGSHDKTIKVWD 289
                 897857***************99*******9 PP

  == domain 5  score: 38.0 bits;  conditional E-value: 1.3e-12
                 ESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40   8 tGH.ssvtslafspdgawlasGsdDgtvriWd 38 
                  +H ++v+s+afspdg+ ++sGsdD+t+++Wd
  KOO23036.1 301 NAHsGDVNSVAFSPDGTKIVSGSDDKTIKVWD 332
                 68*777*************************9 PP

  == domain 6  score: 32.2 bits;  conditional E-value: 8.5e-11
                 ESSSS.EEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40   8 tGHss.vtslafspdgawlasGsdDgtvriWd 38 
                  +Hs+ ++s+afspdg+ ++sGs D t+++Wd
  KOO23036.1 344 NAHSDtIRSVAFSPDGTKIVSGSHDMTIKVWD 375
                 489556****************99*******9 PP

  == domain 7  score: 30.4 bits;  conditional E-value: 3.2e-10
                 ESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40   8 tGH.ssvtslafspdgawlasGsdDgtvriWd 38 
                 ++H  ++ s+afspdg+ ++sGs Dgt+++Wd
  KOO23036.1 387 DAHsLPIMSVAFSPDGPKIMSGSCDGTIKVWD 418
                 478555****************99*******9 PP

>> Chloroa_b-bind  Chlorophyll A-B binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   96.2   0.0   1.9e-30   2.8e-27       3     160 ..     520     693 ..     518     694 .. 0.76

  Alignments for each domain:
  == domain 1  score: 96.2 bits;  conditional E-value: 1.9e-30
                     HHXXSXSTTXSXBXTT-T.T-S..............BSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH.......HTSSSCCCT--..TTTTTTS CS
  Chloroa_b-bind   3 aeldgslpgdlgfDplglskdp..............etlkrlreaEliHGRvAMlavlGalvpelltk.......lsaassfaegpa.waeagkv 75 
                     +++d ++ +d+gfDp+++++                  l+ +reaEl HGR+AMla+l++ v+ell                   p  + e+g  
      KOO23036.1 520 SWVDYNFVADYGFDPFKFAERDlhlgsaldkarpraYVLRDYREAELRHGRLAMLAALAWPVQELLSPvlsralrE---------PLlLVETGGR 605
                     7889999************76689***********999**************************997754333330.........3344443333 PP

                     ..........SS-HHHHHH.HHHHHHHHHHHHHHHHHHSTTCSS-SSSSSSSSHCHHSTTS.TT.TSHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
  Chloroa_b-bind  76 ..........alsvptllalqillligflelareqelkapesegeeekrgypGglgfdplg.lakkdeeekaelkekEiknGRlAMiaflgfvvq 159
                               ++++p++     l++ig++ +  ++  k      e +++  pG++gfdpl+ l+  + e+ + +++ Ei+nGRlAMia+++fv++
      KOO23036.1 606 spsvlnggldQSTIPAT---LGLFAIGIAVVDAYSL-KLR----EGTDDWMPGDFGFDPLNlLGGASLEARRAMQTREINNGRLAMIAVTSFVIE 692
                     45555554334444444...4566677666643332.222....3467899*********96778999*************************99 PP

                     H CS
  Chloroa_b-bind 160 e 160
                     e
      KOO23036.1 693 E 693
                     8 PP

>> Ge1_WD40  WD40 region of Ge1, enhancer of mRNA-decapping protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.1   0.0   9.3e-05      0.14     185     215 ..     129     160 ..     103     170 .. 0.82
   2 !   10.1   0.0   0.00018      0.27     186     215 ..     173     203 ..     160     216 .. 0.83
   3 !    9.0   0.0   0.00039      0.59     183     214 ..     213     245 ..     203     247 .. 0.84
   4 !    9.6   0.0   0.00026      0.39     186     214 ..     260     288 ..     251     293 .. 0.87
   5 !    9.5   0.0   0.00029      0.44     183     215 ..     299     332 ..     289     343 .. 0.88
   6 !   10.2   0.0   0.00018      0.27     185     215 ..     344     375 ..     332     385 .. 0.86
   7 !   11.6   0.0   6.6e-05     0.099     185     218 ..     387     421 ..     376     429 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 9.3e-05
    Ge1_WD40 185 eehs.liveaafspdGtalatasedGevkffq 215
                 + hs  +++ afspdGt +   sed ++k + 
  KOO23036.1 129 NAHSsWVMSVAFSPDGTKIVSGSEDKTIKIWD 160
                 455448***********************995 PP

  == domain 2  score: 10.1 bits;  conditional E-value: 0.00018
    Ge1_WD40 186 ehs.liveaafspdGtalatasedGevkffq 215
                  hs  +++ afspdGt +   s d ++k + 
  KOO23036.1 173 AHSsWVMSVAFSPDGTKIVSGSRDRTIKVWE 203
                 454389**********************996 PP

  == domain 3  score: 9.0 bits;  conditional E-value: 0.00039
    Ge1_WD40 183 kieehs.liveaafspdGtalatasedGevkff 214
                 k + hs ++ + afspdGt +   s d ++k +
  KOO23036.1 213 KTNAHSdCVASVAFSPDGTKIVSGSYDKTIKVW 245
                 5667877999*********************98 PP

  == domain 4  score: 9.6 bits;  conditional E-value: 0.00026
    Ge1_WD40 186 ehsliveaafspdGtalatasedGevkff 214
                 + s i + afspdGt +   s+d ++k +
  KOO23036.1 260 HSSVIWSVAFSPDGTKIVSGSHDKTIKVW 288
                 3358999********************98 PP

  == domain 5  score: 9.5 bits;  conditional E-value: 0.00029
    Ge1_WD40 183 kieehs.liveaafspdGtalatasedGevkffq 215
                 ki+ hs  + + afspdGt +   s d ++k + 
  KOO23036.1 299 KINAHSgDVNSVAFSPDGTKIVSGSDDKTIKVWD 332
                 7889988999*********************985 PP

  == domain 6  score: 10.2 bits;  conditional E-value: 0.00018
    Ge1_WD40 185 eehs.liveaafspdGtalatasedGevkffq 215
                 + hs +i + afspdGt +   s+d ++k + 
  KOO23036.1 344 NAHSdTIRSVAFSPDGTKIVSGSHDMTIKVWD 375
                 56776899*********************996 PP

  == domain 7  score: 11.6 bits;  conditional E-value: 6.6e-05
    Ge1_WD40 185 eehs.liveaafspdGtalatasedGevkffqvyl 218
                 + hs  i++ afspdG  +   s dG++k + v  
  KOO23036.1 387 DAHSlPIMSVAFSPDGPKIMSGSCDGTIKVWDVVN 421
                 5667569************************9965 PP

>> ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.1   1.1e-05     0.016      28      89 ..     116     183 ..      98     186 .. 0.80
   2 !    9.5   0.0    0.0008       1.2      34      89 ..     171     226 ..     165     229 .. 0.85
   3 !    7.5   0.0    0.0033       4.9      28      67 ..     200     247 ..     191     260 .. 0.84
   4 !    8.6   0.1    0.0015       2.2      29      74 ..     244     297 ..     242     304 .. 0.79
   5 !   13.7   0.0   3.9e-05     0.058      36      89 ..     302     355 ..     299     358 .. 0.88
   6 !    9.0   0.0    0.0012       1.7      33      73 ..     342     382 ..     337     386 .. 0.86
   7 !   10.0   0.0   0.00056      0.84      28      71 ..     372     423 ..     371     446 .. 0.76

  Alignments for each domain:
  == domain 1  score: 15.5 bits;  conditional E-value: 1.1e-05
  ANAPC4_WD40  28 rvwtl......eedkedsevrsLaWkpdgklLavaysdgevrlldaesgkvvhslsvksekavtclgW 89 
                  ++ tl      ++++++s v s+a++pdg+ ++ + +d ++++ d+ + +++++ + ++++ v+++ +
   KOO23036.1 116 MIATLikclteKTNAHSSWVMSVAFSPDGTKIVSGSEDKTIKIWDSDKLEMLSEETNAHSSWVMSVAF 183
                  5555556666577889999********************************99888777777777766 PP

  == domain 2  score: 9.5 bits;  conditional E-value: 0.0008
  ANAPC4_WD40  34 edkedsevrsLaWkpdgklLavaysdgevrlldaesgkvvhslsvksekavtclgW 89 
                  +++++s v s+a++pdg+ ++ +  d ++++ ++ + + +++ + +++++v+++ +
   KOO23036.1 171 TNAHSSWVMSVAFSPDGTKIVSGSRDRTIKVWESDKLEELSEKTNAHSDCVASVAF 226
                  56778899***************************988888777766668988876 PP

  == domain 3  score: 7.5 bits;  conditional E-value: 0.0033
  ANAPC4_WD40  28 rvwtl........eedkedsevrsLaWkpdgklLavaysdgevrllda 67 
                  +vw+         ++++++  v s+a++pdg+ ++ +  d ++++ d+
   KOO23036.1 200 KVWESdkleelseKTNAHSDCVASVAFSPDGTKIVSGSYDKTIKVWDS 247
                  677777777777777889999***********************9987 PP

  == domain 4  score: 8.6 bits;  conditional E-value: 0.0015
  ANAPC4_WD40  29 vwtl........eedkedsevrsLaWkpdgklLavaysdgevrlldaesgkvvh 74 
                  vw+         ++++++s + s+a++pdg+ ++ + +d ++++ d+ + ++++
   KOO23036.1 244 VWDSgalgllseNTNAHSSVIWSVAFSPDGTKIVSGSHDKTIKVWDSDKLELLS 297
                  5555555556645667778889*************************9988775 PP

  == domain 5  score: 13.7 bits;  conditional E-value: 3.9e-05
  ANAPC4_WD40  36 kedsevrsLaWkpdgklLavaysdgevrlldaesgkvvhslsvksekavtclgW 89 
                  ++++ v+s+a++pdg+ ++ + +d ++++ d+ + +v+++ + ++++++ ++ +
   KOO23036.1 302 AHSGDVNSVAFSPDGTKIVSGSDDKTIKVWDSDKLEVLSEKTNAHSDTIRSVAF 355
                  56789*********************************9888777778888876 PP

  == domain 6  score: 9.0 bits;  conditional E-value: 0.0012
  ANAPC4_WD40  33 eedkedsevrsLaWkpdgklLavaysdgevrlldaesgkvv 73 
                  ++++++ ++rs+a++pdg+ ++ + +d ++++ d  + +++
   KOO23036.1 342 KTNAHSDTIRSVAFSPDGTKIVSGSHDMTIKVWDFDKLELL 382
                  66788999************************999887766 PP

  == domain 7  score: 10.0 bits;  conditional E-value: 0.00056
  ANAPC4_WD40  28 rvwtl........eedkedsevrsLaWkpdgklLavaysdgevrlldaesgk 71 
                  +vw++        ++d+++  + s+a++pdg  ++ +  dg++++ d+ +  
   KOO23036.1 372 KVWDFdklellseKTDAHSLPIMSVAFSPDGPKIMSGSCDGTIKVWDVVNWS 423
                  5677777777777889999****************************98744 PP

>> PD40  WD40-like Beta Propeller Repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.3   0.0     0.003       4.5      12      24 ..     136     148 ..     129     148 .. 0.82
   2 !    7.2   0.0    0.0033       4.9      12      24 ..     179     191 ..     173     191 .. 0.83
   3 !    6.3   0.0    0.0063       9.4      15      24 ..     225     234 ..     222     234 .. 0.89
   4 !    6.2   0.0     0.007        11      15      24 ..     268     277 ..     266     277 .. 0.90
   5 !    9.8   0.0   0.00052      0.78       3      24 ..     299     320 ..     297     320 .. 0.88
   6 !    6.6   0.0     0.005       7.4      14      24 ..     353     363 ..     347     363 .. 0.87
   7 ?    2.8   0.0     0.081   1.2e+02      11      20 ..     393     402 ..     387     406 .. 0.79

  Alignments for each domain:
  == domain 1  score: 7.3 bits;  conditional E-value: 0.003
                 EEEEE-TTSSEEE CS
        PD40  12 gaPsfSPDGkrla 24 
                 ++ +fSPDG++++
  KOO23036.1 136 MSVAFSPDGTKIV 148
                 6679*******96 PP

  == domain 2  score: 7.2 bits;  conditional E-value: 0.0033
                 EEEEE-TTSSEEE CS
        PD40  12 gaPsfSPDGkrla 24 
                 ++ +fSPDG++++
  KOO23036.1 179 MSVAFSPDGTKIV 191
                 5679*******96 PP

  == domain 3  score: 6.3 bits;  conditional E-value: 0.0063
                 EE-TTSSEEE CS
        PD40  15 sfSPDGkrla 24 
                 +fSPDG++++
  KOO23036.1 225 AFSPDGTKIV 234
                 8*******96 PP

  == domain 4  score: 6.2 bits;  conditional E-value: 0.007
                 EE-TTSSEEE CS
        PD40  15 sfSPDGkrla 24 
                 +fSPDG++++
  KOO23036.1 268 AFSPDGTKIV 277
                 8*******96 PP

  == domain 5  score: 9.8 bits;  conditional E-value: 0.00052
                 E--SSSS.EEEEEE-TTSSEEE CS
        PD40   3 rltntpgnegaPsfSPDGkrla 24 
                 ++  ++g+  + +fSPDG++++
  KOO23036.1 299 KINAHSGDVNSVAFSPDGTKIV 320
                 678899999999********96 PP

  == domain 6  score: 6.6 bits;  conditional E-value: 0.005
                 EEE-TTSSEEE CS
        PD40  14 PsfSPDGkrla 24 
                  +fSPDG++++
  KOO23036.1 353 VAFSPDGTKIV 363
                 58*******96 PP

  == domain 7  score: 2.8 bits;  conditional E-value: 0.081
                 EEEEEE-TTS CS
        PD40  11 egaPsfSPDG 20 
                 +++ +fSPDG
  KOO23036.1 393 IMSVAFSPDG 402
                 57789***** PP

>> Frtz  WD repeat-containing and planar cell polarity effector protein Fritz
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.3   0.0   0.00086       1.3     245     289 ..     118     162 ..     101     171 .. 0.80
   2 !    7.3   0.0   0.00082       1.2     260     328 ..     176     247 ..     162     262 .. 0.72
   3 !    5.4   0.0    0.0032       4.8     262     327 ..     221     289 ..     206     301 .. 0.59
   4 !    6.1   0.0     0.002         3     260     327 ..     262     332 ..     257     332 .. 0.73
   5 !    8.3   0.0   0.00043      0.64     261     328 ..     306     376 ..     299     391 .. 0.80
   6 !    7.2   0.0   0.00088       1.3     261     328 ..     349     419 ..     334     435 .. 0.81

  Alignments for each domain:
  == domain 1  score: 7.3 bits;  conditional E-value: 0.00086
        Frtz 245 knklqrvavtsiPlraqvislafnpdedkLllGceDssviLydee 289
                  + +++ +  +    + v+s+af+pd  k++ G+eD+++ ++d++
  KOO23036.1 118 ATLIKCLTEKTNAHSSWVMSVAFSPDGTKIVSGSEDKTIKIWDSD 162
                 55566666666667789*************************987 PP

  == domain 2  score: 7.3 bits;  conditional E-value: 0.00082
        Frtz 260 aqvislafnpdedkLllGceDssviLydeerkitklvkaevvPs...liswhpdsaillvasergelqifDl 328
                 + v+s+af+pd  k++ G++D ++ ++++++   +  k++   +    +++ pd++ ++ +s    ++++D 
  KOO23036.1 176 SWVMSVAFSPDGTKIVSGSRDRTIKVWESDKLEELSEKTNAHSDcvaSVAFSPDGTKIVSGSYDKTIKVWDS 247
                 678999999999999999999999999987644333344444431115678888888888888888888884 PP

  == domain 3  score: 5.4 bits;  conditional E-value: 0.0032
        Frtz 262 vislafnpdedkLllGceDssviLydeerk..itklv..kaevvPsliswhpdsaillvasergelqifD 327
                 v+s+af+pd  k++ G+ D+++ ++d+     + + +  ++ v    +++ pd++ ++ +s+   ++++D
  KOO23036.1 221 VASVAFSPDGTKIVSGSYDKTIKVWDSGALglLSENTnaHSSV-IWSVAFSPDGTKIVSGSHDKTIKVWD 289
                 6677777777777777777777777765320111111101222.22345555666555555555555555 PP

  == domain 4  score: 6.1 bits;  conditional E-value: 0.002
        Frtz 260 aqvislafnpdedkLllGceDssviLydeerkitklvkaevvP...sliswhpdsaillvasergelqifD 327
                 + + s+af+pd  k++ G++D+++ ++d+++   +  k++      + +++ pd++ ++ +s+   ++++D
  KOO23036.1 262 SVIWSVAFSPDGTKIVSGSHDKTIKVWDSDKLELLSEKINAHSgdvNSVAFSPDGTKIVSGSDDKTIKVWD 332
                 457799*********************99865444445555431125677788888888888777777776 PP

  == domain 5  score: 8.3 bits;  conditional E-value: 0.00043
        Frtz 261 qvislafnpdedkLllGceDssviLydeerkitklvkaevvPsl...iswhpdsaillvasergelqifDl 328
                 +v s+af+pd  k++ G+ D+++ ++d+++   +  k++   ++   +++ pd++ ++ +s+   ++++D+
  KOO23036.1 306 DVNSVAFSPDGTKIVSGSDDKTIKVWDSDKLEVLSEKTNAHSDTirsVAFSPDGTKIVSGSHDMTIKVWDF 376
                 6889***********************99876666666666655111568999999999999999999996 PP

  == domain 6  score: 7.2 bits;  conditional E-value: 0.00088
        Frtz 261 qvislafnpdedkLllGceDssviLydeer..kitklvkaevvP.sliswhpdsaillvasergelqifDl 328
                  + s+af+pd  k++ G++D ++ ++d ++   + + + a+ +P   +++ pd+  ++ +s  g ++++D+
  KOO23036.1 349 TIRSVAFSPDGTKIVSGSHDMTIKVWDFDKleLLSEKTDAHSLPiMSVAFSPDGPKIMSGSCDGTIKVWDV 419
                 577899999999*999**99999988765411456667777888346899999999999999999999997 PP

>> WD40_like  WD40-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.1   0.0    0.0041       6.1       3      65 ..     135     199 ..     133     221 .. 0.76
   2 ?    3.0   0.0     0.036        53       3      65 ..     178     242 ..     176     245 .. 0.77
   3 !    7.9   0.1    0.0012       1.7       5     110 ..     223     334 ..     219     344 .. 0.73
   4 !    7.6   0.0    0.0014         2       3      67 ..     350     416 ..     348     426 .. 0.83

  Alignments for each domain:
  == domain 1  score: 6.1 bits;  conditional E-value: 0.0041
   WD40_like   3 iYsidiskkgslilyGgkddkctvlkleslesvsivesfedS.vifvkllddd.lilvvtlDGti 65 
                 + s+ +s++g+ i+ G++d+++++ + + le+ s +++ + S v+ v +  d  +i+ ++ D ti
  KOO23036.1 135 VMSVAFSPDGTKIVSGSEDKTIKIWDSDKLEMLSEETNAHSSwVMSVAFSPDGtKIVSGSRDRTI 199
                 678999**************************999999888745555555443477777788777 PP

  == domain 2  score: 3.0 bits;  conditional E-value: 0.036
   WD40_like   3 iYsidiskkgslilyGgkddkctvlkleslesvsives.fedSvifvkllddd.lilvvtlDGti 65 
                 + s+ +s++g+ i+ G++d +++v + + le+ s  ++  +d v  v +  d  +i+ ++ D ti
  KOO23036.1 178 VMSVAFSPDGTKIVSGSRDRTIKVWESDKLEELSEKTNaHSDCVASVAFSPDGtKIVSGSYDKTI 242
                 67999**********************99999886554267888777776554356666666655 PP

  == domain 3  score: 7.9 bits;  conditional E-value: 0.0012
   WD40_like   5 sidiskkgslilyGgkddkctvlkleslesvsivesfedSvifvkllddd..lilvvtlDGtillsllenee.evenekiee...distvkv..iddkl 95 
                 s+ +s++g+ i+ G+ d++++v +   l + s  ++ + Svi++   + d  +i+ ++ D ti  ++   ++ e  +eki+    d+  v    ++ k+
  KOO23036.1 223 SVAFSPDGTKIVSGSYDKTIKVWDSGALGLLSENTNAHSSVIWSVAFSPDgtKIVSGSHDKTI--KVWDSDKlELLSEKINAhsgDVNSVAFspDGTKI 319
                 889999999999999999999999999999999999999999998887776689999999999..6666666666666666422255555441134567 PP

   WD40_like  96 liGtnkGsiyvfskd 110
                 + G++  +i v++ d
  KOO23036.1 320 VSGSDDKTIKVWDSD 334
                 777777777777666 PP

  == domain 4  score: 7.6 bits;  conditional E-value: 0.0014
   WD40_like   3 iYsidiskkgslilyGgkddkctvlkleslesvsives.fedSvifvkllddd.lilvvtlDGtill 67 
                 i s+ +s++g+ i+ G++d +++v +++ le+ s  ++  +  ++ v +  d  +i+ ++ DGti  
  KOO23036.1 350 IRSVAFSPDGTKIVSGSHDMTIKVWDFDKLELLSEKTDaHSLPIMSVAFSPDGpKIMSGSCDGTIKV 416
                 67999**************************999876614556788887766569*********965 PP

>> DCX  Doublecortin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.9   0.0      0.08   1.2e+02      12      42 ..     119     151 ..     114     153 .. 0.83
   2 ?    0.1   0.0       0.6     9e+02      14      40 ..     164     192 ..     162     196 .. 0.80
   3 ?    3.6   0.0     0.047        70      14      40 ..     207     235 ..     204     239 .. 0.87
   4 ?   -3.2   0.0       6.6   9.9e+03      31      40 ..     269     278 ..     268     280 .. 0.86
   5 !    7.8   0.0    0.0024       3.6      14      43 ..     293     324 ..     289     325 .. 0.88
   6 ?    3.3   0.0     0.061        92      14      41 ..     336     365 ..     333     369 .. 0.86

  Alignments for each domain:
  == domain 1  score: 2.9 bits;  conditional E-value: 0.08
         DCX  12 alLdeltekvklpfg.Vrkly.tldGrkvvssl 42 
                 +l + ltek ++++  V  +  ++dG+k+vs  
  KOO23036.1 119 TLIKCLTEKTNAHSSwVMSVAfSPDGTKIVSGS 151
                 6788899**9999999999955*****999954 PP

  == domain 2  score: 0.1 bits;  conditional E-value: 0.6
         DCX  14 Ldeltekvklpfg.Vrkly.tldGrkvvs 40 
                 L++l+e  ++++  V  +  ++dG+k+vs
  KOO23036.1 164 LEMLSEETNAHSSwVMSVAfSPDGTKIVS 192
                 78888888888888888855*****9998 PP

  == domain 3  score: 3.6 bits;  conditional E-value: 0.047
         DCX  14 Ldeltekvklpfg.Vrkly.tldGrkvvs 40 
                 L+el+ek ++++  V  +  ++dG+k+vs
  KOO23036.1 207 LEELSEKTNAHSDcVASVAfSPDGTKIVS 235
                 89********9999888855*****9998 PP

  == domain 4  score: -3.2 bits;  conditional E-value: 6.6
         DCX  31 ytldGrkvvs 40 
                 +++dG+k+vs
  KOO23036.1 269 FSPDGTKIVS 278
                 89****9997 PP

  == domain 5  score: 7.8 bits;  conditional E-value: 0.0024
         DCX  14 Ldeltekvklpfg.Vrkly.tldGrkvvssld 43 
                 L+ l+ek+++++g V  +  ++dG+k+vs  d
  KOO23036.1 293 LELLSEKINAHSGdVNSVAfSPDGTKIVSGSD 324
                 899**************966*****9999555 PP

  == domain 6  score: 3.3 bits;  conditional E-value: 0.061
         DCX  14 Ldeltekvklpfg.Vrkly.tldGrkvvss 41 
                 L+ l+ek ++++  +r +  ++dG+k+vs 
  KOO23036.1 336 LEVLSEKTNAHSDtIRSVAfSPDGTKIVSG 365
                 7889****999999***966*****99984 PP

>> Dfp1_Him1_M  Dfp1/Him1, central region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.0   0.1     0.074   1.1e+02       5      23 ..     150     168 ..     146     180 .. 0.74
   2 ?    4.6   0.0     0.025        37       2      29 ..     190     217 ..     189     227 .. 0.79
   3 ?    3.5   0.0     0.054        81       3      30 ..     277     304 ..     275     313 .. 0.77
   4 ?    2.6   0.0       0.1   1.5e+02       6      30 ..     323     347 ..     318     355 .. 0.72
   5 !    6.0   0.0    0.0089        13       2      21 ..     362     381 ..     361     394 .. 0.81

  Alignments for each domain:
  == domain 1  score: 3.0 bits;  conditional E-value: 0.074
  Dfp1_Him1_M   5 kArelkmkiWsleKlqrvL 23 
                    ++  +kiW+ +Kl+ + 
   KOO23036.1 150 GSEDKTIKIWDSDKLEMLS 168
                  566778*********8654 PP

  == domain 2  score: 4.6 bits;  conditional E-value: 0.025
  Dfp1_Him1_M   2 ilskArelkmkiWsleKlqrvLknllek 29 
                  i+s  r+  +k+W+ +Kl+++ ++ +++
   KOO23036.1 190 IVSGSRDRTIKVWESDKLEELSEKTNAH 217
                  566678899*********9987766655 PP

  == domain 3  score: 3.5 bits;  conditional E-value: 0.054
  Dfp1_Him1_M   3 lskArelkmkiWsleKlqrvLknllekd 30 
                  +s  ++  +k+W+ +Kl+ + +++++++
   KOO23036.1 277 VSGSHDKTIKVWDSDKLELLSEKINAHS 304
                  56677889*********98777776655 PP

  == domain 4  score: 2.6 bits;  conditional E-value: 0.1
  Dfp1_Him1_M   6 ArelkmkiWsleKlqrvLknllekd 30 
                    +  +k+W+ +Kl+ + ++ ++++
   KOO23036.1 323 SDDKTIKVWDSDKLEVLSEKTNAHS 347
                  556789********87666655555 PP

  == domain 5  score: 6.0 bits;  conditional E-value: 0.0089
  Dfp1_Him1_M   2 ilskArelkmkiWsleKlqr 21 
                  i+s  +++ +k+W+++Kl+ 
   KOO23036.1 362 IVSGSHDMTIKVWDFDKLEL 381
                  6677899**********985 PP

>> Nbas_N  Neuroblastoma-amplified sequence, N terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.0   0.0     0.035        52     210     263 ..     114     166 ..      96     178 .. 0.69
   2 ?   -0.5   0.0      0.42   6.3e+02     228     262 ..     174     208 ..     164     217 .. 0.75
   3 !    5.8   0.0    0.0051       7.6     223     261 ..     212     250 ..     186     261 .. 0.83
   4 ?    1.8   0.0      0.08   1.2e+02     228     263 ..     260     295 ..     249     310 .. 0.79
   5 !    4.9   0.1    0.0094        14     221     264 ..     338     382 ..     314     390 .. 0.78
   6 ?    1.9   0.0     0.078   1.2e+02     231     263 ..     392     424 ..     376     432 .. 0.78

  Alignments for each domain:
  == domain 1  score: 3.0 bits;  conditional E-value: 0.035
      Nbas_N 210 krgllkllslklysrkaeekdgvfkmslspdgtllavihfsgklsiwdipslkq 263
                 k+ ++  l   l  +++     v+ +++spdgt++        + iwd   l++
  KOO23036.1 114 KK-MIATLIKCLTEKTNAHSSWVMSVAFSPDGTKIVSGSEDKTIKIWDSDKLEM 166
                 22.3333333355667778888999**********9999999999999877665 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 0.42
      Nbas_N 228 ekdgvfkmslspdgtllavihfsgklsiwdipslk 262
                     v+ +++spdgt++        + +w+   l+
  KOO23036.1 174 HSSWVMSVAFSPDGTKIVSGSRDRTIKVWESDKLE 208
                 4556888999******9998888888888876665 PP

  == domain 3  score: 5.8 bits;  conditional E-value: 0.0051
      Nbas_N 223 srkaeekdgvfkmslspdgtllavihfsgklsiwdipsl 261
                  +++   d v  +++spdgt++    +   + +wd  +l
  KOO23036.1 212 EKTNAHSDCVASVAFSPDGTKIVSGSYDKTIKVWDSGAL 250
                 4667889***************************98776 PP

  == domain 4  score: 1.8 bits;  conditional E-value: 0.08
      Nbas_N 228 ekdgvfkmslspdgtllavihfsgklsiwdipslkq 263
                     ++ +++spdgt++        + +wd   l++
  KOO23036.1 260 HSSVIWSVAFSPDGTKIVSGSHDKTIKVWDSDKLEL 295
                 445678999********999999999***9877765 PP

  == domain 5  score: 4.9 bits;  conditional E-value: 0.0094
      Nbas_N 221 lys.rkaeekdgvfkmslspdgtllavihfsgklsiwdipslkqr 264
                 + s +++   d +  +++spdgt++        + +wd   l++ 
  KOO23036.1 338 VLSeKTNAHSDTIRSVAFSPDGTKIVSGSHDMTIKVWDFDKLELL 382
                 455145677899999**********99999999****99888765 PP

  == domain 6  score: 1.9 bits;  conditional E-value: 0.078
      Nbas_N 231 gvfkmslspdgtllavihfsgklsiwdipslkq 263
                  ++ +++spdg ++      g + +wd+    +
  KOO23036.1 392 PIMSVAFSPDGPKIMSGSCDGTIKVWDVVNWSR 424
                 5788899********************987655 PP

>> DpaA_N  Dipicolinate synthase subunit A N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.0   0.0      0.14   2.1e+02      35      85 ..     114     166 ..      98     172 .. 0.80
   2 ?    3.3   0.0     0.058        87      31      79 ..     153     201 ..     120     244 .. 0.75
   3 ?    0.4   0.0      0.44   6.6e+02      45      80 ..     253     289 ..     224     305 .. 0.81
   4 ?    2.0   0.0      0.14   2.1e+02      32      93 ..     369     430 ..     351     439 .. 0.82

  Alignments for each domain:
  == domain 1  score: 2.0 bits;  conditional E-value: 0.14
                 -BTTEEEE-GGGS-GGG-SEEE--TT-BETTTEE-BSS-SS-EE-..HHHHHT CS
      DpaA_N  35 kiegvekaesleealedadviilPvpgtkdggeintpfseeklsl..eellek 85 
                 k   ++  + l+e  +    +++ v ++ dg +i +  +++ +++  ++ le+
  KOO23036.1 114 KKMIATLIKCLTEKTNAHSSWVMSVAFSPDGTKIVSGSEDKTIKIwdSDKLEM 166
                 55566677788899999999*********************999975555555 PP

  == domain 2  score: 3.3 bits;  conditional E-value: 0.058
                 TSSS-BTTEEEE-GGGS-GGG-SEEE--TT-BETTTEE-BSS-SS-EE- CS
      DpaA_N  31 eleekiegvekaesleealedadviilPvpgtkdggeintpfseeklsl 79 
                 +++ ki +  k e l+e+ +    +++ v ++ dg +i +   ++ +++
  KOO23036.1 153 DKTIKIWDSDKLEMLSEETNAHSSWVMSVAFSPDGTKIVSGSRDRTIKV 201
                 4555666677788888888888888888888888888888877777776 PP

  == domain 3  score: 0.4 bits;  conditional E-value: 0.44
                 GGS-GGG-SEEE--TT-BETTTEE-BSS-SS-EE-.H CS
      DpaA_N  45 leealedadviilPvpgtkdggeintpfseeklsl.e 80 
                 l+e  +    +i  v ++ dg +i +  +++ +++ +
  KOO23036.1 253 LSENTNAHSSVIWSVAFSPDGTKIVSGSHDKTIKVwD 289
                 67778888999***************99999998752 PP

  == domain 4  score: 2.0 bits;  conditional E-value: 0.14
                 SSS-BTTEEEE-GGGS-GGG-SEEE--TT-BETTTEE-BSS-SS-EE-HHHHHTS-TT-EEE CS
      DpaA_N  32 leekiegvekaesleealedadviilPvpgtkdggeintpfseeklsleelleklkkgqllf 93 
                 ++ k  ++ k e l+e  +   + i+ v ++ dg +i +  ++  +++ ++++  +k++l f
  KOO23036.1 369 MTIKVWDFDKLELLSEKTDAHSLPIMSVAFSPDGPKIMSGSCDGTIKVWDVVNWSRKDHLMF 430
                 455566678888999999888999999********************999999888888776 PP

>> rOmpB  Rickettsia outer membrane protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.0       2.9   4.4e+03      59      90 ..      68      99 ..      63     118 .. 0.78
   2 ?   -0.0   0.0      0.34   5.1e+02      31      50 ..     132     151 ..     107     156 .. 0.84
   3 ?    0.3   0.0      0.27     4e+02      29      50 ..     173     194 ..     153     211 .. 0.84
   4 ?    0.7   0.0       0.2     3e+02      33      50 ..     220     237 ..     211     243 .. 0.84
   5 ?    1.0   0.0      0.16   2.4e+02      22      50 ..     252     280 ..     239     287 .. 0.84
   6 ?    4.4   0.0     0.015        23      20      50 ..     293     323 ..     281     337 .. 0.88
   7 ?   -0.8   0.0      0.58   8.6e+02      33      50 ..     349     366 ..     336     370 .. 0.82

  Alignments for each domain:
  == domain 1  score: -3.1 bits;  conditional E-value: 2.9
       rOmpB 59 lntlildngttvkflgdatfngetkieaksil 90
                +n +i d  + v  +g + ++g + i+a++  
  KOO23036.1 68 YNGIIWDPRSIVSPFGTTGMKGAASIDARTFA 99
                78899999999999999999999999998765 PP

  == domain 2  score: -0.0 bits;  conditional E-value: 0.34
       rOmpB  31 danvgslvfraggtsivsgt 50 
                  + v s+ f   gt+ivsg+
  KOO23036.1 132 SSWVMSVAFSPDGTKIVSGS 151
                 456899************96 PP

  == domain 3  score: 0.3 bits;  conditional E-value: 0.27
       rOmpB  29 ttdanvgslvfraggtsivsgt 50 
                 +  + v s+ f   gt+ivsg+
  KOO23036.1 173 AHSSWVMSVAFSPDGTKIVSGS 194
                 45567899************96 PP

  == domain 4  score: 0.7 bits;  conditional E-value: 0.2
       rOmpB  33 nvgslvfraggtsivsgt 50 
                  v s+ f   gt+ivsg+
  KOO23036.1 220 CVASVAFSPDGTKIVSGS 237
                 699*************97 PP

  == domain 5  score: 1.0 bits;  conditional E-value: 0.16
       rOmpB  22 lyatnitttdanvgslvfraggtsivsgt 50 
                 l ++n  +  + + s+ f   gt+ivsg+
  KOO23036.1 252 LLSENTNAHSSVIWSVAFSPDGTKIVSGS 280
                 66778888888899*************96 PP

  == domain 6  score: 4.4 bits;  conditional E-value: 0.015
       rOmpB  20 vnlyatnitttdanvgslvfraggtsivsgt 50 
                 ++l +++i +   +v s+ f   gt+ivsg+
  KOO23036.1 293 LELLSEKINAHSGDVNSVAFSPDGTKIVSGS 323
                 568889999999*****************96 PP

  == domain 7  score: -0.8 bits;  conditional E-value: 0.58
       rOmpB  33 nvgslvfraggtsivsgt 50 
                  + s+ f   gt+ivsg+
  KOO23036.1 349 TIRSVAFSPDGTKIVSGS 366
                 578999**********96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (733 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       378  (0.0210832); expected 358.6 (0.02)
Passed bias filter:                      335  (0.0186848); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                        13  (0.000725082); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.72u 0.32s 00:00:01.04 Elapsed: 00:00:00.47
# Mc/sec: 4669.18
//
Query:       KOO23037.1  [L=626]
Description: hypothetical protein Ctob_001732 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.1e-05   23.2   0.3    0.00011   22.1   0.3    1.5  1  PAN_1     PAN domain
    5.6e-05   23.0   0.4    0.00014   21.7   0.4    1.6  1  PAN_4     PAN domain
     0.0032   17.8   0.1        4.2    7.8   0.0    2.6  2  fn3       Fibronectin type III domain


Domain annotation for each model (and alignments):
>> PAN_1  PAN domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.1   0.3   1.8e-08   0.00011       8      46 ..     222     258 ..     217     274 .. 0.89

  Alignments for each domain:
  == domain 1  score: 22.1 bits;  conditional E-value: 1.8e-08
                 EEEEESEEEEEEECSSHHHHHHHHHHSTTS--SEEEEET CS
       PAN_1   8 gstlsgedkktitvdsaeeCaerCseekkfrCrsftfnn 46 
                 g++ +g+ +k++++++a eC+ rC+ e++  C+++tf +
  KOO23037.1 222 GERHKGDPIKEVNAVDAVECCGRCAAEPG--CLHYTFGS 258
                 56778999****888**************..******65 PP

>> PAN_4  PAN domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.7   0.4   2.4e-08   0.00014       3      39 ..     225     259 ..     224     269 .. 0.89

  Alignments for each domain:
  == domain 1  score: 21.7 bits;  conditional E-value: 2.4e-08
       PAN_4   3 ypGndlangevladspeaCcaaCaadsnCnawvyvkp 39 
                 ++G+++++  v+a ++ +Cc+ Caa+++C ++++  +
  KOO23037.1 225 HKGDPIKE--VNAVDAVECCGRCAAEPGCLHYTFGSD 259
                 58999999..89**********************765 PP

>> fn3  Fibronectin type III domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.9   0.0    0.0013       7.8      14      44 ..       8      37 ..       3      52 .. 0.85
   2 !    7.8   0.0    0.0007       4.2       7      40 ..     143     176 ..     139     181 .. 0.87

  Alignments for each domain:
  == domain 1  score: 6.9 bits;  conditional E-value: 0.0013
                SEEEEEEE-CSSSSSTEEEEEEEEEETTSTS CS
         fn3 14 tsltvsWeppkdgggpitgYeveyrekgsee 44
                +sltv+W +   + + +  Y v+y ++++ +
  KOO23037.1  8 SSLTVQWAEA-ALPSRVLEYVVTYGPTEERS 37
                89********.6************9987655 PP

  == domain 2  score: 7.8 bits;  conditional E-value: 0.0007
                 EEEEESSSEEEEEEE-CSSSSSTEEEEEEEEEET CS
         fn3   7 svsevtstsltvsWeppkdgggpitgYeveyrek 40 
                  +s ++s s+ +sW+  +d  +++t+++++y  +
  KOO23037.1 143 VASVTSSASIELSWSGAFDSCRTLTRWQIQYTRS 176
                 5777899************************654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (626 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       534  (0.0297841); expected 358.6 (0.02)
Passed bias filter:                      312  (0.017402); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.55u 0.24s 00:00:00.79 Elapsed: 00:00:00.40
# Mc/sec: 4679.74
//
Query:       KOO23038.1  [L=125]
Description: hypothetical protein Ctob_001731 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (125 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       426  (0.0237604); expected 358.6 (0.02)
Passed bias filter:                      400  (0.0223102); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.22s 00:00:00.59 Elapsed: 00:00:00.37
# Mc/sec: 1024.12
//
Query:       KOO23039.1  [L=864]
Description: protein of unknown function duf726 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.1e-74  250.5  24.8    2.8e-63  213.9   0.0    3.8  3  DUF726    Protein of unknown function (DUF726)
     0.0011   18.8   0.2      0.032   14.1   0.1    2.8  2  UBA       UBA/TS-N domain


Domain annotation for each model (and alignments):
>> DUF726  Protein of unknown function (DUF726)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.4  23.1   6.7e-10     6e-06       2      90 ..     223     335 ..     222     364 .. 0.82
   2 ?   -1.7   0.0      0.12   1.1e+03     232     264 ..     470     502 ..     465     523 .. 0.75
   3 !  213.9   0.0   3.2e-67   2.8e-63     128     342 ..     630     849 ..     611     850 .. 0.93

  Alignments for each domain:
  == domain 1  score: 25.4 bits;  conditional E-value: 6.7e-10
      DUF726   2 kikrylliglAglaGgaligltggLaaPlvaagigallagl.Gltgsaa.......................fLasvggsavitallgaagAklsvkkm 76 
                 k++r+++++  g+a g+ iglt+gLaaP v ag+ga+ +g+ G++g+ +                       +L +  g++v+t+l+ga+gA+l+  k+
  KOO23039.1 223 KWRRRAAVAGIGVASGLAIGLTAGLAAPAVLAGLGAVGTGIaGIGGAVGaaglvgsgtlttavgasivgitaVLQGSIGVTVVTTLFGATGAGLASLKL 321
                 89*********************************99888774444333333666776777777776766665666667899***************** PP

      DUF726  77 kkrvkeikdFefip 90 
                 ++r +++++Fef  
  KOO23039.1 322 NRRLGDVQEFEFAQ 335
                 ************74 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 0.12
      DUF726 232 viyvCLlelakkkalglvenvillGaPvtteak 264
                  i     el+ +++++l++  + +G P  + ++
  KOO23039.1 470 EIRASAAELEARRQQELISALVEMGFPQHAARE 502
                 5556667999*****************887654 PP

  == domain 3  score: 213.9 bits;  conditional E-value: 3.2e-67
      DUF726 128 kdlYalkwEvelLkelGkaleti.lasealsvakqeilkrtvlaslvaaltWPlaLlkvakildnpwnvsleraakaGklLAdallsraqGeRpvtLiG 225
                  +   l wE++ L  lG+al +i  +  a+s+ ++ +l++t lasl+aa++ P  L+k   ++dnpw ++++ra+kaG lLA++ll+r++G+Rpv+L G
  KOO23039.1 630 AEHHVLLWESKELRVLGNALGHIdWKGMAVSTGASAALHYTFLASLMAAVAMPAYLVKACDVIDNPWAIGFKRAQKAGALLAHVLLERTHGKRPVILSG 728
                 478899**************9983456788999999*************************************************************** PP

      DUF726 226 fslGARviyvCLlelak...k...kalglvenvillGaPvtteakvwlkvrsvvsgRlvnvysenDylLgflyRtssaqfrvaglqrieldvekvenvd 318
                 f lGARvi+ CLl+la+   +   +a g+++ v+l+G+P+t++++vw  +r vv+gR+vn y  nD +L  ++R++++ + vagl+++++  + ven+d
  KOO23039.1 729 FGLGARVIFDCLLVLAEalkRgdvRAAGVIQHVVLMGLPATADPEVWKGLRLVVAGRIVNCYRPNDLVLLIVHRAANMTYGVAGLGEVSC--DSVENYD 825
                 ***************963323445689**************************************************************8..79***** PP

      DUF726 319 vselvegHldYrkklkkilkaigl 342
                 vs +v++H +Yr++  +++  +gl
  KOO23039.1 826 VSGIVHAHGKYRRQTGAVFDLVGL 849
                 ********************9987 PP

>> UBA  UBA/TS-N domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.1   0.1   3.6e-06     0.032       3      22 ..     484     503 ..     482     504 .. 0.90
   2 ?    1.5   0.0     0.031   2.8e+02       2      16 ..     510     524 ..     509     526 .. 0.87

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 3.6e-06
                 HHHHHHHHHTTS-HHHHHHH CS
         UBA   3 eeaiqrLveMGFdreevveA 22 
                 +e i+ LveMGF+  +++eA
  KOO23039.1 484 QELISALVEMGFPQHAAREA 503
                 788999*************9 PP

  == domain 2  score: 1.5 bits;  conditional E-value: 0.031
                 CHHHHHHHHHTTS-H CS
         UBA   2 deeaiqrLveMGFdr 16 
                  ee +++L+  GF +
  KOO23039.1 510 LEEIVEELLGNGFKP 524
                 69***********76 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (864 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       608  (0.0339115); expected 358.6 (0.02)
Passed bias filter:                      297  (0.0165653); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.60u 0.26s 00:00:00.86 Elapsed: 00:00:00.39
# Mc/sec: 6600.79
//
Query:       KOO23040.1  [L=572]
Description: adenylyl cyclase, partial [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.5e-05   23.6   1.2    4.8e-05   22.7   1.2    1.5  1  Ion_trans  Ion transport protein


Domain annotation for each model (and alignments):
>> Ion_trans  Ion transport protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.7   1.2   2.7e-09   4.8e-05      26     151 ..     141     296 ..     119     370 .. 0.71

  Alignments for each domain:
  == domain 1  score: 22.7 bits;  conditional E-value: 2.7e-09
                 SS...HHHHC.HHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHCHSHHHHHHHHHHHHHHHHH..........HHHH.............HHHHHHHH CS
   Ion_trans  26 pe...delek.tileilelvftaiftlemllkilalgllikkrYlrdpwnilDflvvlpsllsl..........vlse.............esllllsv 97 
                      d++   t++ ++ l+f+++f+ e + + ++++      Yl +++ ++ +++    +l l          +                +s+ + +v
  KOO23040.1 141 HGwplDKT-VdTPFAWASLFFLILFVAEQATRSIVQRE----DYLFSLFWWMELFANASMVLMLgpilapegehR--CsvkfglsalgvvaGSITIARV 232
                 33332333.2499***************9888888777....9*******************8888876666552..0446667778888889999999 PP

                 HHHHGGGGGGHHH.......CHSHHHHHHHH.HHHHHHHH.HHH.HHHHHHHHHHHHHHHHHHH CS
   Ion_trans  98 lrlfrvlrllkli.......srleglrtlvt.alirsvkd.lln.vlllllvvlfifaligvql 151
                  r++rvlrll+++       ++ ++ rt+ + a++r+++d l++ ++++++ + +if l+++q 
  KOO23040.1 233 SRIARVLRLLRVFsaareaaNQAPRRRTVKQsAIGRALNDkLVQsMAVIVVALQLIFPLLSFQE 296
                 9999999999999666666666777777777556666654244423334444456666666555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (572 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       675  (0.0376485); expected 358.6 (0.02)
Passed bias filter:                      426  (0.0237604); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.54u 0.27s 00:00:00.81 Elapsed: 00:00:00.42
# Mc/sec: 4129.35
//
Query:       KOO23041.1  [L=252]
Description: hypothetical protein Ctob_001736 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.041   13.9   0.0        4.9    7.3   0.0    2.3  2  BofC_C    BofC C-terminal domain


Domain annotation for each model (and alignments):
>> BofC_C  BofC C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.3   0.0    0.0024        42      39      60 ..      98     119 ..      95     123 .. 0.89
   2 ?    7.3   0.0   0.00027       4.9      20      60 ..     176     216 ..     172     226 .. 0.85

  Alignments for each domain:
  == domain 1  score: 4.3 bits;  conditional E-value: 0.0024
                 ---TTTS-HHHHHHHHH--S-- CS
      BofC_C  39 qidveklesslkeqLkkGIrve 60 
                 q+  ++l s+l   L kGIrv 
  KOO23041.1  98 QLPLDDLRSRLARGLCKGIRVA 119
                 89999***************96 PP

  == domain 2  score: 7.3 bits;  conditional E-value: 0.00027
                 EEEEBSSS-STT-BS-------TTTS-HHHHHHHHH--S-- CS
      BofC_C  20 tlslfeGepeeekviksffqidveklesslkeqLkkGIrve 60 
                 +ls+  G+ e+  ++ +f  +dv  + +++  +L+  I  +
  KOO23041.1 176 RLSVLAGRHERTPPVARFGLVDVGPMLEEQSRALEVPILAR 216
                 69999*************************99998766555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (252 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       420  (0.0234257); expected 358.6 (0.02)
Passed bias filter:                      271  (0.0151152); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.24s 00:00:00.64 Elapsed: 00:00:00.40
# Mc/sec: 1874.42
//
Query:       KOO23042.1  [L=395]
Description: ankyrin repeat protein l93-like protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.3e-47  159.0   7.5    1.5e-16   60.7   0.1    3.7  4  Ank_2     Ankyrin repeats (3 copies)
    4.7e-28   96.4   3.1    2.6e-05   24.4   0.0    5.9  6  Ank       Ankyrin repeat
    2.1e-27   95.1   2.5    1.1e-08   35.4   0.0    6.0  6  Ank_4     Ankyrin repeats (many copies)
    5.3e-21   72.5   2.4    8.3e-05   22.7   0.0    6.3  6  Ank_3     Ankyrin repeat
    2.1e-20   72.5  11.0    7.7e-06   26.1   0.1    5.0  5  Ank_5     Ankyrin repeats (many copies)


Domain annotation for each model (and alignments):
>> Ank_2  Ankyrin repeats (3 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.7   0.1   4.1e-20   1.5e-16       2      80 ..     168     256 ..     167     259 .. 0.85
   2 !   42.7   0.1   1.7e-14   6.2e-11      25      80 ..     228     289 ..     223     292 .. 0.88
   3 !   56.2   0.1   1.1e-18     4e-15      12      82 ..     244     321 ..     243     322 .. 0.87
   4 !   23.7   0.1   1.5e-08   5.3e-05      25      73 ..     294     345 ..     292     354 .. 0.81

  Alignments for each domain:
  == domain 1  score: 60.7 bits;  conditional E-value: 4.1e-20
       Ank_2   2 hlAakngnlelvklLl.egadpn..k.ngktaLhyAakngnleivklLleh...ad...ndgrtpLhyAarsghleivklLlekgadin 80 
                   A+++g +++v+lLl ++a ++  +  g+taL+ +++ng+ e+v+lLl+    ++   ndg+++L+++++ gh+ +++lL++kg+ +n
  KOO23042.1 168 VAACSHGLTPVVQLLLdQKASVDaaTpSGWTALMESCQNGHGECVRLLLQRganVNlakNDGWNALMVSSKAGHEGCIRLLVQKGVAVN 256
                 4688889779******988888764379*********************9665633556***********************9998777 PP

  == domain 2  score: 42.7 bits;  conditional E-value: 1.7e-14
       Ank_2  25 ngktaLhyAakngnleivklLleh......adndgrtpLhyAarsghleivklLlekgadin 80 
                 +g++aL+++ k+g++ +++lL+++      a++dg+t+L++++r++h  + + Ll++ga+++
  KOO23042.1 228 DGWNALMVSSKAGHEGCIRLLVQKgvavnhAKSDGWTALMISCRNSHVSCTRALLDRGAHVD 289
                 89********************977774445599*************************987 PP

  == domain 3  score: 56.2 bits;  conditional E-value: 1.1e-18
       Ank_2  12 lvklLl.egadpn..k.ngktaLhyAakngnleivklLleh...ad...ndgrtpLhyAarsghleivklLlekgadinlk 82 
                 +++lL+ +g+ +n  k +g+taL+++++n ++ + ++Ll+    +d    +g t+L++A+ ++  e+v+lLlekgad+++k
  KOO23042.1 244 CIRLLVqKGVAVNhaKsDGWTALMISCRNSHVSCTRALLDRgahVDalkPNGFTALMAAC-QT--ELVQLLLEKGADVTAK 321
                 8999*999*99997637**********************955554455699********9.35..9************987 PP

  == domain 4  score: 23.7 bits;  conditional E-value: 1.5e-08
       Ank_2  25 ngktaLhyAakngnleivklLleh...ad...ndgrtpLhyAarsghleivklLl 73 
                 ng taL++A++    e+v+lLle+   ++   +dg ++L +A ++ + e+++lL 
  KOO23042.1 294 NGFTALMAACQT---ELVQLLLEKgadVTakrKDGASALSLAEEYARHETARLLR 345
                 689999999997...8999999988551145699999999999997779999885 PP

>> Ank  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.5   0.0    0.0017       6.2       8      30 ..     169     192 ..     161     194 .. 0.82
   2 !   24.4   0.0   7.5e-09   2.7e-05       2      29 ..     196     224 ..     195     227 .. 0.90
   3 !   12.1   0.0   5.7e-05       0.2       1      28 [.     228     256 ..     228     260 .. 0.84
   4 !   23.2   0.0   1.8e-08   6.5e-05       1      30 [.     261     291 ..     261     292 .. 0.94
   5 !   24.4   0.0   7.4e-09   2.6e-05       1      30 [.     294     321 ..     294     323 .. 0.93
   6 ?   -2.8   0.0       2.9   1.1e+04       1      19 [.     324     342 ..     324     349 .. 0.63

  Alignments for each domain:
  == domain 1  score: 7.5 bits;  conditional E-value: 0.0017
                 HHHHHTTHHHHHHHH.TTTSTTCB CS
         Ank   8 lAatngkkriiklLL.hGAnlnal 30 
                  A++ g + +++lLL + A+++a 
  KOO23042.1 169 AACSHGLTPVVQLLLdQKASVDAA 192
                 477888899******778**9986 PP

  == domain 2  score: 24.4 bits;  conditional E-value: 7.5e-09
                 SBBHHHHHHHHTTHHHHHHHH.TTTSTTC CS
         Ank   2 GnTPLHlAatngkkriiklLL.hGAnlna 29 
                 G+T+L+  ++ng+ ++++lLL +GAn+n+
  KOO23042.1 196 GWTALMESCQNGHGECVRLLLqRGANVNL 224
                 9*****99*************779***95 PP

  == domain 3  score: 12.1 bits;  conditional E-value: 5.7e-05
                 TSBBHHHHHHHHTTHHHHHHHH.TT.TSTT CS
         Ank   1 dGnTPLHlAatngkkriiklLL.hG.Anln 28 
                 dG+ +L++ +  g++ +i+lL+ +G A +n
  KOO23042.1 228 DGWNALMVSSKAGHEGCIRLLVqKGvA-VN 256
                 8*******99888888******77965.66 PP

  == domain 4  score: 23.2 bits;  conditional E-value: 1.8e-08
                 TSBBHHHHHHHHTTHHHHHHHH.TTTSTTCB CS
         Ank   1 dGnTPLHlAatngkkriiklLL.hGAnlnal 30 
                 dG+T+L++ ++n +++++++LL +GA ++al
  KOO23042.1 261 DGWTALMISCRNSHVSCTRALLdRGAHVDAL 291
                 9*********************779**9985 PP

  == domain 5  score: 24.4 bits;  conditional E-value: 7.4e-09
                 TSBBHHHHHHHHTTHHHHHHHH.TTTSTTCB CS
         Ank   1 dGnTPLHlAatngkkriiklLL.hGAnlnal 30 
                 +G+T+L+ A++      ++lLL +GA+++a+
  KOO23042.1 294 NGFTALMAACQTE---LVQLLLeKGADVTAK 321
                 8*********888...******99****997 PP

  == domain 6  score: -2.8 bits;  conditional E-value: 2.9
                 TSBBHHHHHHHHTTHHHHH CS
         Ank   1 dGnTPLHlAatngkkriik 19 
                 dG ++L lA  ++ ++ ++
  KOO23042.1 324 DGASALSLAEEYARHETAR 342
                 7888998864444444554 PP

>> Ank_4  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.4   0.0   3.1e-12   1.1e-08       2      55 .]     164     216 ..     163     216 .. 0.95
   2 !   14.0   0.1   1.6e-05     0.059      15      47 ..     210     241 ..     210     241 .. 0.88
   3 !   33.8   0.1     1e-11   3.6e-08      10      55 .]     238     282 ..     232     282 .. 0.91
   4 !   15.2   0.0   6.6e-06     0.023      12      45 ..     273     305 ..     273     306 .. 0.93
   5 !   15.8   0.0   4.5e-06     0.016       7      39 ..     298     329 ..     296     332 .. 0.88
   6 ?    2.3   0.0     0.075   2.7e+02       4      52 ..     328     380 ..     326     381 .. 0.72

  Alignments for each domain:
  == domain 1  score: 35.4 bits;  conditional E-value: 3.1e-12
       Ank_4   2 ltaLhyaaisgrlelvrlLlekgadinaqdnrsGetalhiAakrgnveilklLl 55 
                 +++L +a+++g +++v+lLl+++a+++a +++ G+tal   +++g+ e+++lLl
  KOO23042.1 164 YPCLVAACSHGLTPVVQLLLDQKASVDAATPS-GWTALMESCQNGHGECVRLLL 216
                 57999***********************9777.********************8 PP

  == domain 2  score: 14.0 bits;  conditional E-value: 1.6e-05
       Ank_4  15 elvrlLlekgadinaqdnrsGetalhiAakrgn 47 
                 e+vrlLl++ga++n  +n+ G++al    k g+
  KOO23042.1 210 ECVRLLLQRGANVNLAKND-GWNALMVSSKAGH 241
                 79*************9655.*****98888876 PP

  == domain 3  score: 33.8 bits;  conditional E-value: 1e-11
       Ank_4  10 isgrlelvrlLlekgadinaqdnrsGetalhiAakrgnveilklLl 55 
                 ++g++ ++rlL++kg+ +n+   ++G+tal i +++++v++++ Ll
  KOO23042.1 238 KAGHEGCIRLLVQKGVAVNHA-KSDGWTALMISCRNSHVSCTRALL 282
                 39******************8.788******************997 PP

  == domain 4  score: 15.2 bits;  conditional E-value: 6.6e-06
       Ank_4  12 grlelvrlLlekgadinaqdnrsGetalhiAakr 45 
                 +++ + r Ll++ga ++a +++ G+tal  A+++
  KOO23042.1 273 SHVSCTRALLDRGAHVDALKPN-GFTALMAACQT 305
                 58999**************999.*********86 PP

  == domain 5  score: 15.8 bits;  conditional E-value: 4.5e-06
       Ank_4   7 yaaisgrlelvrlLlekgadinaqdnrsGetal 39 
                 ++++++++elv+lLlekgad+ a   ++G +al
  KOO23042.1 298 ALMAACQTELVQLLLEKGADVTAK-RKDGASAL 329
                 45679******************8.99999887 PP

  == domain 6  score: 2.3 bits;  conditional E-value: 0.075
       Ank_4   4 aLhyaaisgrlelvrlLlek.gad....inaqdnrsGetalhiAakrgnveilk 52 
                 aL  a ++ r+e++rlL ++ g        a+ ++ +  a+  Aa++ + ++++
  KOO23042.1 328 ALSLAEEYARHETARLLRSTlGLPstrpASAV-PAGDTDAFAQAARKARTKVVQ 380
                 555666799********998777656655565.775556888888888877775 PP

>> Ank_3  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.5   0.0   0.00098       3.5       5      30 ..     166     190 ..     164     191 .. 0.86
   2 !   22.7   0.0   2.3e-08   8.3e-05       2      30 ..     196     223 ..     195     224 .. 0.96
   3 !    9.5   0.0   0.00046       1.6       1      31 []     228     257 ..     228     257 .. 0.94
   4 !   17.6   0.0     1e-06    0.0038       1      30 [.     261     289 ..     261     290 .. 0.95
   5 !    8.3   0.0    0.0012       4.2       1      30 [.     294     319 ..     294     320 .. 0.75
   6 ?   -2.6   0.0         4   1.4e+04       1      20 [.     324     343 ..     324     345 .. 0.73

  Alignments for each domain:
  == domain 1  score: 8.5 bits;  conditional E-value: 0.00098
       Ank_3   5 pLhlAarsgnleivkfLlenkgadvn 30 
                  L  A+++g +++v++Ll+   a v+
  KOO23042.1 166 CLVAACSHGLTPVVQLLLD-QKASVD 190
                 5778***************.788876 PP

  == domain 2  score: 22.7 bits;  conditional E-value: 2.3e-08
       Ank_3   2 GetpLhlAarsgnleivkfLlenkgadvn 30 
                 G+t+L++ + +g+ e v++Ll+ +ga+vn
  KOO23042.1 196 GWTALMESCQNGHGECVRLLLQ-RGANVN 223
                 9*********************.*****9 PP

  == domain 3  score: 9.5 bits;  conditional E-value: 0.00046
       Ank_3   1 nGetpLhlAarsgnleivkfLlenkgadvna 31 
                 +G+++L++  ++g+   +++L++ kg+ vn+
  KOO23042.1 228 DGWNALMVSSKAGHEGCIRLLVQ-KGVAVNH 257
                 69*************88******.9***996 PP

  == domain 4  score: 17.6 bits;  conditional E-value: 1e-06
       Ank_3   1 nGetpLhlAarsgnleivkfLlenkgadvn 30 
                 +G+t+L++ +r+ +++  ++Ll+ +ga v+
  KOO23042.1 261 DGWTALMISCRNSHVSCTRALLD-RGAHVD 289
                 69*********************.9**998 PP

  == domain 5  score: 8.3 bits;  conditional E-value: 0.0012
       Ank_3   1 nGetpLhlAarsgnleivkfLlenkgadvn 30 
                 nG t+L+ A+    +e+v++Lle kgadv 
  KOO23042.1 294 NGFTALMAACQ---TELVQLLLE-KGADVT 319
                 67888885554...4559*****.9***85 PP

  == domain 6  score: -2.6 bits;  conditional E-value: 4
       Ank_3   1 nGetpLhlAarsgnleivkf 20 
                 +G ++L lA +++++e +++
  KOO23042.1 324 DGASALSLAEEYARHETARL 343
                 58899999977887775555 PP

>> Ank_5  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.7   0.0     7e-05      0.25      19      53 ..     166     200 ..     157     201 .. 0.93
   2 !   25.3   0.2   3.7e-09   1.3e-05       1      53 [.     182     233 ..     182     234 .. 0.90
   3 !   21.0   0.1   8.5e-08    0.0003       1      53 [.     215     266 ..     215     268 .. 0.89
   4 !   21.9   0.1   4.3e-08   0.00016       1      53 [.     248     299 ..     248     299 .. 0.84
   5 !   26.1   0.1   2.2e-09   7.7e-06       1      56 []     281     332 ..     281     332 .. 0.95

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 7e-05
       Ank_5  19 pLhvAakygaadvvrlLlargadlnltdsrGltal 53 
                 +L  A+++g  +vv+lLl+  a+ ++ + +G+tal
  KOO23042.1 166 CLVAACSHGLTPVVQLLLDQKASVDAATPSGWTAL 200
                 5888*****************************98 PP

  == domain 2  score: 25.3 bits;  conditional E-value: 3.7e-09
       Ank_5   1 LlehgpadvnrldgggntpLhvAakygaadvvrlLlargadlnltdsrGltal 53 
                 Ll+   a+v++  + g t+L+ ++ +g+ ++vrlLl rga+ nl  ++G++al
  KOO23042.1 182 LLDQK-ASVDAATPSGWTALMESCQNGHGECVRLLLQRGANVNLAKNDGWNAL 233
                 67777.77777777777********************************9997 PP

  == domain 3  score: 21.0 bits;  conditional E-value: 8.5e-08
       Ank_5   1 LlehgpadvnrldgggntpLhvAakygaadvvrlLlargadlnltdsrGltal 53 
                 Ll++g a+vn   ++g ++L+v++k+g+  ++rlL+  g++ n   s+G+tal
  KOO23042.1 215 LLQRG-ANVNLAKNDGWNALMVSSKAGHEGCIRLLVQKGVAVNHAKSDGWTAL 266
                 89999.66666666666***********************************8 PP

  == domain 4  score: 21.9 bits;  conditional E-value: 4.3e-08
       Ank_5   1 Llehg.padvnrldgggntpLhvAakygaadvvrlLlargadlnltdsrGltal 53 
                 L+++g  +++  +dg+  t+L++++++ + ++ r Ll+rga+ ++   +G tal
  KOO23042.1 248 LVQKGvAVNHAKSDGW--TALMISCRNSHVSCTRALLDRGAHVDALKPNGFTAL 299
                 7888844444444444..********************************9997 PP

  == domain 5  score: 26.1 bits;  conditional E-value: 2.2e-09
       Ank_5   1 LlehgpadvnrldgggntpLhvAakygaadvvrlLlargadlnltdsrGltaldlA 56 
                 Ll++g a v++l ++g+t+L+ A+     ++v+lLl+ gad +++ ++G +al lA
  KOO23042.1 281 LLDRG-AHVDALKPNGFTALMAACQ---TELVQLLLEKGADVTAKRKDGASALSLA 332
                 89***.88889999999********...*************************988 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (395 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       626  (0.0349155); expected 358.6 (0.02)
Passed bias filter:                      396  (0.0220871); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.51u 0.28s 00:00:00.79 Elapsed: 00:00:00.43
# Mc/sec: 2755.64
//
Query:       KOO23043.1  [L=2147]
Description: hypothetical protein Ctob_001734 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.1e-32  111.4   0.1    1.6e-29  102.8   0.1    2.5  1  DUF4486   Domain of unknown function (DUF4486)


Domain annotation for each model (and alignments):
>> DUF4486  Domain of unknown function (DUF4486)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  102.8   0.1     9e-34   1.6e-29       3     349 ..      31     370 ..      29     411 .. 0.81

  Alignments for each domain:
  == domain 1  score: 102.8 bits;  conditional E-value: 9e-34
     DUF4486   3 elkrrgaktlfniWnkykprlPkkyynekllkvgDsLveikeYklAllqcYgryLqqfssvnideitedveefksvffpegfedknakltfralqgksi 101
                 el++ ++++l+++   y+ +l    y+e+l++ g  + ++ +Y+lAl++c+   L   +       +           ++g+   + +l + a  g   
  KOO23043.1  31 ELQATVTSSLLELLSTYRLKLQLGVYQERLVQSGRIIASLGDYELALSECFAPILGTAE------LE-----------AKGMG--AIRLRVLAEFGSVE 110
                 567788999*****************************************998876544......33...........33544..45666777789999 PP

     DUF4486 102 clyqlvceedeklqneesvkkclkiLsslrlimqvalpqeklCwlvynGtihiYticRkLmvlgqsakaLEyLlWasicmEssvpLlsvkYLtwratLY 200
                 c++ l+ e+d+++ +  s  ++ ++L  +r+ m    ++e+l wlv nGt   Y++c +Lm    +a a+E L W ++cmE  +pLl+ ++L wr  LY
  KOO23043.1 111 CSFALLDERDPSVAHAASTATVRELLRRVRVGMASCAKHETLYWLVLNGTRLAYSMCTRLMRPERAAEAIETLGWCALCMEGMLPLLAPRFLMWRIQLY 209
                 *************************************************************************************************** PP

     DUF4486 201 aAvcqCyyDcqagihgEvFARRaLakideLkqleelssskeseetkkafreAtikmavmiFkravfesRrk...pksllRpklkvnlkevqnlpWPrtt 296
                  A c+Cy  + +   + + A  aLa+  +Lk+ ++    ++++e +  +  A   + ++ Fk +   +  k   p +l      +  k   + + P  +
  KOO23043.1 210 EALCHCYEAVGMVEAAAKAATHALARYTQLKNYDKHDPVPPTAEMNARYDRAEKALGALRFKYVTCLAPPKgpsPEELAAAAAPAKGKPPAKGEVPPPP 308
                 **************************************************************9865444332225667666666666766676666666 PP

     DUF4486 297 tEr....llaelf.dstaaqfLailEalsd..snRrvLqtgppvsd..EveirdviaELffA 349
                  E      l+e   ++ +aq++a+lEal d  ++ r+L t+pp      + +   ++  f A
  KOO23043.1 309 PESglvvALKETVgEAPTAQLVAVLEALHDytTSARTLATAPPSEAreKIAVSATTSVTFAA 370
                 6652111233333255689**********94446799**99986542134444444444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (2147 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       771  (0.043003); expected 358.6 (0.02)
Passed bias filter:                      452  (0.0252106); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 1.14u 0.32s 00:00:01.46 Elapsed: 00:00:00.49
# Mc/sec: 13176.66
//
Query:       KOO23044.1  [L=535]
Description: glucan -beta [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
      4e-11   42.9   2.3      1e-10   41.5   2.3    1.6  1  Cellulase     Cellulase (glycosyl hydrolase family 5)
  ------ inclusion threshold ------
       0.17   11.3   0.0       0.33   10.4   0.0    1.5  1  AP_endonuc_2  Xylose isomerase-like TIM barrel


Domain annotation for each model (and alignments):
>> Cellulase  Cellulase (glycosyl hydrolase family 5)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.5   2.3   1.1e-14     1e-10      14     249 ..     114     377 ..     101     390 .. 0.73

  Alignments for each domain:
  == domain 1  score: 41.5 bits;  conditional E-value: 1.1e-14
                 CETTSCGGSHHHHHHHHHHHT-SEEEEEEE.CTGGTTSSTTTGCTHHHHHHHHHHHHHHHHTT-EEEEEEESS...............TTTCSSSSTTT CS
   Cellulase  14 stswgnpyttkalidevkdagfntvRlpvs.wgelvenapdykvdenslerveevvkyakenglyvildiHse...............egwltkadgns 96 
                 + +w      ++ i+++++ g n+vR+pv+ w +  + +p +   + + ++++ v++++ + +++++ldiH                  +         
  KOO23044.1 114 RRHWQAW-VREEDIASIAKTGSNMVRIPVGdW-QFAPYGPYIGCMDGANDELKRVLDLCSKYKIKALLDIHAVrgsqngfdnsgqalaVK--------- 201
                 4444332.4578999***************76.55556666677788*************************866666666666555533......... PP

                 THHHHHHH..............................................HHHHHHHHHHHHTTTTTTEEEESSSS--STTCTCCTCHHHTTHHH CS
   Cellulase  97 sedtaeef..............................................fkklwtqiAerykkndevvifelmNEPhgnntgaewtseeadevk 149
                        +                                                ++++ i + +k+ + +++ e +NEP +   +        + +k
  KOO23044.1 202 -------WtqvtsqaddggittfehwpirsaewagkfelsswsyssindtninsTLAVVQTIVSMFKDHPAIWGLEPLNEPWQA-IP-------LEVLK 285
                 .......133333333334444455566666666666666666555544454333337999**********************4.44.......377** PP

                 HHHHHHHHHHHHHTTSSEEEEECHHHHTBHHHHHCT.SGSSSSTTEEEEEEEETTTHHHTGCGSHSCTHHHHHHHHHHHHHHHHHHT.TSEEEEEEEES CS
   Cellulase 150 ayaeeaikaIRavgpnrliivegnswsgnldgavln.dPndsqdnliysvHfYgpsdfaqtefgkdltdktnlaqrledaakylvek.gipviigEfGg 246
                 +++   + ++R+  p+++ ++   s+ g +++   + +     ++ + + H Y+ ++  +  +     + +  a +++ + +++ e+ ++p+i+gE+ +
  KOO23044.1 286 KFYWDGYHIVREGAPKWMFVMHD-SFRGYPSA-WWDfMK-G-CSHKVLDAHIYQAWNRPGLMS-----TFYKNACNFRGNVRQMEEQvDMPLIVGEWSL 375
                 ****************8877777.79999998.555354.3.6999***********988777.....4456678888888888554388*******98 PP

                 STT CS
   Cellulase 247 sna 249
                   +
  KOO23044.1 376 A-T 377
                 4.3 PP

>> AP_endonuc_2  Xylose isomerase-like TIM barrel
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.0   3.7e-05      0.33      65     141 ..     113     191 ..      71     206 .. 0.79

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 3.7e-05
                   HHHHHHHHHHHHHHH..HHHTBSEEEEEBCCGBCTTTSGHHHHHHHHHHHHHHHHHHHHHHTSEEEEE--TTTTSSSTC CS
  AP_endonuc_2  65 reesvdalkraiela..aaLGapllvlhpGtagagpkgseeeawerlaeslneladyaekegvklalEtlagsgvelgd 141
                    +++ +a+ r+ ++a  a+ G  ++ +++G++ + p g++  + + + + l++++d + k+ +k +l  +a  g+++g 
    KOO23044.1 113 MRRHWQAWVREEDIAsiAKTGSNMVRIPVGDWQFAPYGPYIGCMDGANDELKRVLDLCSKYKIKALLDIHAVRGSQNGF 191
                   45566666666666634667999***********************************************999988876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (535 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       464  (0.0258799); expected 358.6 (0.02)
Passed bias filter:                      392  (0.021864); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.54u 0.26s 00:00:00.80 Elapsed: 00:00:00.43
# Mc/sec: 3767.97
//
Query:       KOO23045.1  [L=511]
Description: hypothetical protein Ctob_001738 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      1e-05   25.9   0.2    0.00019   21.8   0.2    2.6  1  DUF4231   Protein of unknown function (DUF4231)


Domain annotation for each model (and alignments):
>> DUF4231  Protein of unknown function (DUF4231)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.8   0.2   1.1e-08   0.00019      26     101 ..     387     484 ..     342     488 .. 0.79

  Alignments for each domain:
  == domain 1  score: 21.8 bits;  conditional E-value: 1.1e-08
     DUF4231  26 vlgallpilvs......................sklgagvsvlkiltallsalvailaaleeffrykerWrryRstaEsLktekwlflakagpYsdnk 101
                  l+al+p+l +                           g  +l ++ +ll +++a+l+a+ + +r++e+W +  ++a ++  + + + +++  Y+ ++
  KOO23045.1 387 ALAALTPVLDTiqndelssgaldgvvegavteeVNPLKGLAALEMTMVLLPIISALLNAIRSKMRPREKWATCYMAAFQIVNQIYDYRLRTNAYDPTP 484
                 344444444449999999999999999999988667889999****************************************************9876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (511 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       562  (0.0313459); expected 358.6 (0.02)
Passed bias filter:                      480  (0.0267723); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.56u 0.25s 00:00:00.81 Elapsed: 00:00:00.42
# Mc/sec: 3615.19
//
Query:       KOO23046.1  [L=598]
Description: double-strand break repair protein mus-23, partial [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.7e-39  134.8   0.1    8.3e-39  133.6   0.1    1.6  1  Mre11_DNA_bind  Mre11 DNA-binding presumed domain
    1.8e-08   35.1   0.0    4.7e-08   33.8   0.0    1.7  1  Metallophos     Calcineurin-like phosphoesterase
    1.3e-05   25.5   0.0    2.8e-05   24.4   0.0    1.7  1  Metallophos_2   Calcineurin-like phosphoesterase superfamily 


Domain annotation for each model (and alignments):
>> Mre11_DNA_bind  Mre11 DNA-binding presumed domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  133.6   0.1   1.4e-42   8.3e-39       1     166 [.     319     494 ..     319     496 .. 0.88

  Alignments for each domain:
  == domain 1  score: 133.6 bits;  conditional E-value: 1.4e-42
                     EEEEEEE-SSS--EEEEEEECCC-TTT-CCTS-CCCHHHHHHHHHHHHHHHHHHHH....SSSTTS------EEEEEEE-TTT-----HHHHHHC CS
  Mre11_DNA_bind   1 FklepipLktvRpfvlkeisLsdvaelkkkeknkekvtkflrekVeelieeaeeew....eeeaeeeepplPLiRLrVdysggfevenpqrfgqr 91 
                     +k+epi+L+t+Rpfvl+e++L+ +a++ ++ +++e ++++l+e+Ve++++e ++++       a+e++++ PL RL+Vdy+ gf++ npq+fg+r
      KOO23046.1 319 YKFEPIELQTARPFVLREVVLASHADE-RELESEEGLAELLAEQVEDMLAEVHAKFpttpLTAADENRQKYPLLRLKVDYT-GFSTLNPQKFGAR 411
                     799********************9986.899****************************98899*****************.************* PP

                     CCTTBS-SSSSEEEE-S-XXXXXXXXXXXXXXX...........XXXXXXX...XXCHHHHHHHHHHS...XXTTSXHHHHHHHH CS
  Mre11_DNA_bind  92 FvgkVANpndvlqfyrkkkarkkkkkekaaake.....eeellaeaekldk...lkvedlVkeyleaqe..kLkllpekglneAv 166
                     Fv++VANp+ +l+f+r++k +k +k+++  ++      + ++l+e e+l +    +++ lV+e+l+ ++  +L llp++ l  Av
      KOO23046.1 412 FVERVANPSSMLKFHRSNKGAKATKESAGGKEGgkrkmA-SELDE-EALPSevpQQIQGLVSEMLAGNTkdQLRLLPQRMLDAAV 494
                     ******************999887777555555777642.22222.222223579***********99889************99 PP

>> Metallophos  Calcineurin-like phosphoesterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.8   0.0   7.8e-12   4.7e-08       1     201 [.      32     266 ..      32     269 .. 0.63

  Alignments for each domain:
  == domain 1  score: 33.8 bits;  conditional E-value: 7.8e-12
                  EEEEEEESBTB...TTCCTHHHHHHHHHHHH....HHHTTESEEEEESTSSSSS........................HHHHHHHHHHHHHHHH.... CS
  Metallophos   1 lrilvigDlHl...algggqlddllkllddl....lreekpdlvllaGDlvdrg........................dlekellellaalvky.... 63 
                  +ril+ +D+Hl   ++ + + dd++++++++     ++ ++d+vll+G l++++                        +              +    
   KOO23046.1  32 IRILLASDTHLglnERDPIRKDDAKNTFEEIfriaVEQ-RADMVLLTGNLFHENkpsrramqtaievlrnhclgngdvS--------------Ldils 114
                  59************777777777777776666552555.***************6666666665555555555555552..............03333 PP

                  ......................TSEEEEEC-TTSCHHHHHHHHHHHHHHHHHHHEHHHCEEETSEEEEEETTEEEEEEEESECEEE.THHHHHHHHHH CS
  Metallophos  64 ......................pipvylllGNHegfeeellnkygylgifsepwrsdaevfnnlplaslgsgslkvlllhGgspel.lvsldklgsln 138
                                          pv++++G H+    +     g ++++     +  ++f+ +p  +++    + ll+  g+  l l+    +++ +
   KOO23046.1 115 dqgasfhgnyksvnyedpnynvQLPVFAIHGDHD----DPGGEGGLSALDLLASANLLNYFGKVPNTAHIAL--TPLLIRKGTTKLaLYGMGHVNNDQ 206
                  33333444446666667777778999********....6666666666665555556777888888886666..555666665555544445555555 PP

                  HSCHHHHCCHHHHHHHHHHTTCSEEEEEESSESSCSSSCSCCHHHHHHHHHHTTESEEEEESS CS
  Metallophos 139 leleapepgdewlkdlekrekadwvivlgHsplyrgsgylfgdealedllkkygvdlvisGHt 201
                  l +  ++++  +       ++  w  vl+ + +   +  +    a+++ l     dlv++GH+
   KOO23046.1 207 LTRALERKE--FNVARPSSDPETWFNVLALHQNR-AKTSTGTAGAVKEALLPSCMDLVLWGHE 266
                  555544432..22221122333444445555555.6777888888888888888999999997 PP

>> Metallophos_2  Calcineurin-like phosphoesterase superfamily domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.4   0.0   4.7e-09   2.8e-05       2     131 ..      33     204 ..      32     265 .. 0.84

  Alignments for each domain:
  == domain 1  score: 24.4 bits;  conditional E-value: 4.7e-09
  Metallophos_2   2 klaiiSDlH............snldaleavlealkevgvdaiihaGDl.eeeepe..vleellelapvlaVrGNnDeev...veedvlreaaelgt 79 
                    ++++ SD+H            ++ +  e++++++ e+++d+++++G+l  e +p+  ++++++e+++   + GN D  v   + +d ++++++  +
     KOO23046.1  33 RILLASDTHlglnerdpirkdDAKNTFEEIFRIAVEQRADMVLLTGNLfHENKPSrrAMQTAIEVLR-NHCLGNGD--VsldILSDQGASFHGNYK 125
                    799***************999999999999******************9888886669999999854.5689****..424577777777777777 PP

  Metallophos_2  80 dlp.eeaelelagekvlliHgdpl............................gvkdalaellkeaeegsd.vvvcGHtHvpe 131
                    ++  e+ + +  +  v+ iHgd++                             ++ al++ll +  +g + ++++G  Hv +
     KOO23046.1 126 SVNyEDPNYN-VQLPVFAIHGDHDdpggegglsaldllasanllnyfgkvpnTAHIALTPLLIR--KGTTkLALYGMGHVNN 204
                    7766666666.5557******9889999999999999999999988888877777778888777..4444489999888875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (598 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       745  (0.0415528); expected 358.6 (0.02)
Passed bias filter:                      520  (0.0290033); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.59u 0.27s 00:00:00.86 Elapsed: 00:00:00.41
# Mc/sec: 4343.67
//
Query:       KOO23047.1  [L=289]
Description: c-terminal domain of histone macro h2a1 like protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.1e-20   72.9   0.0    3.7e-20   72.1   0.0    1.4  1  Macro     Macro domain


Domain annotation for each model (and alignments):
>> Macro  Macro domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   72.1   0.0   2.1e-24   3.7e-20       1     108 [.      67     178 ..      67     182 .. 0.91

  Alignments for each domain:
  == domain 1  score: 72.1 bits;  conditional E-value: 2.1e-24
                 EEEEETTSS-CSHHHHHHHHHHHHHHHHHHHHHHHHHHS...--TTSEEEEE-TTSSSSEEEEEESE-TTTS.TSTTHHHHHHHHHHHHHHHHHHTT-S CS
       Macro   1 VnAaNsrllggggvagaihraagkalkeeckelekkqgg...cllGeavvtpaynlpakyvihtvgplftss.kskeeeellakayknalelaeekgik 95 
                 VnAaN+    gggv+ga   ++g al ++  +l   +++   c++G+a++t +++l ++++ih+vgp ++   +++e + ll  ay  ++++a++k ++
  KOO23047.1  67 VNAANEGCISGGGVDGAVSDKGGDALHRARLALPIVRKPsvrCPTGDAKMTIGGELLCEWCIHAVGPNYRYVaDDDEGDLLLYMAYHASMREARKKACR 165
                 9**************************999887666655677****************************88566666667899*************** PP

                 EEEEE-TTSSTTS CS
       Macro  96 svafPaistGifg 108
                 ++af  +s+Gif+
  KOO23047.1 166 TLAFSLLSAGIFR 178
                 ***********96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (289 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       493  (0.0274974); expected 358.6 (0.02)
Passed bias filter:                      416  (0.0232026); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.25s 00:00:00.71 Elapsed: 00:00:00.42
# Mc/sec: 2067.47
//
Query:       KOO23048.1  [L=262]
Description: hypothetical protein Ctob_005743 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.3e-09   37.3   0.8    0.00019   21.2   0.0    3.6  3  LRR_6     Leucine Rich repeat
  ------ inclusion threshold ------
       0.13   12.1   1.3         12    5.8   0.0    2.6  2  LRR_8     Leucine rich repeat


Domain annotation for each model (and alignments):
>> LRR_6  Leucine Rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.2   0.0   2.2e-08   0.00019       2      24 .]     167     189 ..     166     189 .. 0.95
   2 !    7.8   0.0   0.00042       3.8       2      23 ..     195     216 ..     194     216 .. 0.92
   3 !    4.5   0.5    0.0048        43       2      14 ..     223     235 ..     222     236 .. 0.89

  Alignments for each domain:
  == domain 1  score: 21.2 bits;  conditional E-value: 2.2e-08
       LRR_6   2 nthLteLdLsgNdIgDeGaeaLa 24 
                 n +++ LdL+ N+++D+G+ a+a
  KOO23048.1 167 NETVKRLDLARNCLSDAGVAAIA 189
                 89*******************98 PP

  == domain 2  score: 7.8 bits;  conditional E-value: 0.00042
       LRR_6   2 nthLteLdLsgNdIgDeGaeaL 23 
                 n ++++++L +N++g  G+ a+
  KOO23048.1 195 NKTIEYVNLESNEFGERGGVAF 216
                 99*************9999885 PP

  == domain 3  score: 4.5 bits;  conditional E-value: 0.0048
       LRR_6   2 nthLteLdLsgNd 14 
                 n++L +L+L+ N 
  KOO23048.1 223 NSTLSYLNLKENS 235
                 9********9995 PP

>> LRR_8  Leucine rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.8   0.0    0.0013        12      21      40 ..     164     183 ..     159     208 .. 0.80
   2 ?    4.5   0.6    0.0033        29      24      37 ..     223     236 ..     196     241 .. 0.86

  Alignments for each domain:
  == domain 1  score: 5.8 bits;  conditional E-value: 0.0013
                 STT-TT--EEE--SS---GG CS
       LRR_8  21 FkglsnLkvLdLsnNllttl 40 
                  k+++ +k LdL +N+l+  
  KOO23048.1 164 LKTNETVKRLDLARNCLSDA 183
                 6778899**********975 PP

  == domain 2  score: 4.5 bits;  conditional E-value: 0.0033
                 -TT--EEE--SS-- CS
       LRR_8  24 lsnLkvLdLsnNll 37 
                 +s L +L+L++N+l
  KOO23048.1 223 NSTLSYLNLKENSL 236
                 57899*******98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (262 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       623  (0.0347482); expected 358.6 (0.02)
Passed bias filter:                      485  (0.0270511); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.47u 0.25s 00:00:00.72 Elapsed: 00:00:00.42
# Mc/sec: 1860.35
//
Query:       KOO23049.1  [L=105]
Description: hypothetical protein Ctob_005741 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (105 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       621  (0.0346366); expected 358.6 (0.02)
Passed bias filter:                      233  (0.0129957); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.23s 00:00:00.60 Elapsed: 00:00:00.39
# Mc/sec: 813.02
//
Query:       KOO23050.1  [L=277]
Description: hypothetical protein Ctob_005746 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    5.2e-09   35.6   3.8    5.7e-09   35.5   2.6    1.6  2  Nbl1_Borealin_N  Nbl1 / Borealin N terminal
     0.0038   17.2   1.6     0.0069   16.3   0.0    2.1  2  Borealin         Cell division cycle-associated protein 8


Domain annotation for each model (and alignments):
>> Nbl1_Borealin_N  Nbl1 / Borealin N terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.5   2.6   6.4e-13   5.7e-09       3      55 ..      32      85 ..      31      86 .. 0.96
   2 ?   -2.7   0.0      0.55   4.9e+03      20      33 ..     258     271 ..     255     275 .. 0.64

  Alignments for each domain:
  == domain 1  score: 35.5 bits;  conditional E-value: 6.4e-13
  Nbl1_Borealin_N  3 ealLenfdlEveeRirrlraelelllktlrnrfelell.riPkavRkmtmkell 55
                     e++L+++d+E+e+++++++  +e+l+++l++  ++++l ++P+ ++km m++++
       KOO23050.1 32 ETVLQELDIELEQKTKQMNQLVEQLIDNLESTVRIDILfKLPTCIQKMSMRDFC 85
                     689*********************************988**************7 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 0.55
  Nbl1_Borealin_N  20 lraelelllktlrn 33 
                      l+a++e +l+ +++
       KOO23050.1 258 LKAQVERHLAAIKA 271
                      67777777766654 PP

>> Borealin  Cell division cycle-associated protein 8
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.4      0.18   1.6e+03      87      97 ..      46      56 ..      32      68 .. 0.45
   2 !   16.3   0.0   7.7e-07    0.0069       1      97 [.     157     262 ..     157     273 .. 0.76

  Alignments for each domain:
  == domain 1  score: -1.0 bits;  conditional E-value: 0.18
    Borealin 87 akeldevdeel 97
                 k+++++ e+l
  KOO23050.1 46 TKQMNQLVEQL 56
                22222222222 PP

  == domain 2  score: 16.3 bits;  conditional E-value: 7.7e-07
    Borealin   1 RssrsklrTPaakrkkavSadrsvakstslitpkvdprlpkt..llRtpkagErvlslsGSPlaeg........vvteevanvniPvgdGevlslqake 89 
                 R++r+++ T  a+++   S++r ++  t++   +  p +p+   + R  + gE +++  GSP+a+         v ++    ++i +g+G+ l+l  +e
  KOO23050.1 157 RQTRARMGTV-ASTPAGASTARGAVAATPAAGTTAVPYTPRFdcAPRPLQEGELAFTANGSPIAVPgtikakagVGPRVGGVATITLGNGNELTLGLSE 254
                 7889999988.6678899999999999999999999999988756788899*************99655554444444445678888888888888888 PP

    Borealin  90 ldevdeel 97 
                 l+ +++++
  KOO23050.1 255 LEVLKAQV 262
                 87766554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (277 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       855  (0.0476881); expected 358.6 (0.02)
Passed bias filter:                      634  (0.0353617); expected 358.6 (0.02)
Passed Vit filter:                        51  (0.00284455); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.49u 0.25s 00:00:00.74 Elapsed: 00:00:00.41
# Mc/sec: 2004.92
//
Query:       KOO23051.1  [L=1575]
Description: hypothetical protein Ctob_005747, partial [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    3.4e-20   72.1  10.2    4.9e-19   68.3  11.3    2.0  2  PKD_channel  Polycystin cation channel
    9.7e-11   41.4  13.4    9.7e-11   41.4  13.4    1.8  2  Ion_trans    Ion transport protein
    5.2e-08   32.2   0.3     0.0033   17.2   0.0    2.8  2  EF-hand_6    EF-hand domain
    8.5e-08   31.2   1.0    0.00035   19.9   0.2    2.8  2  EF-hand_1    EF hand
      2e-06   28.2   1.3    5.3e-06   26.8   1.3    1.8  1  EF-hand_7    EF-hand domain pair
    9.5e-06   25.4   0.6      3e-05   23.8   0.2    2.0  2  EF-hand_8    EF-hand domain pair
    4.8e-05   22.7   1.9    0.00025   20.4   0.1    2.8  2  EF-hand_5    EF hand


Domain annotation for each model (and alignments):
>> PKD_channel  Polycystin cation channel
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.1   0.0     0.099   2.5e+02       3      28 ..     743     768 ..     741     776 .. 0.89
   2 !   68.3  11.3   1.9e-22   4.9e-19     145     421 ..    1010    1294 ..    1002    1299 .. 0.88

  Alignments for each domain:
  == domain 1  score: 0.1 bits;  conditional E-value: 0.099
                  -STT--SHHHHHHHHTTHHHHTTTTS CS
  PKD_channel   3 glatvtdlediykwlesvLlpaltsn 28 
                  +++t+ ++ di++w +  L p+l  n
   KOO23051.1 743 EFNTIRRIADIWQWGNALLWPGLLGN 768
                  799****************9999877 PP

  == domain 2  score: 68.3 bits;  conditional E-value: 1.9e-22
                   HHHHHTTSS-TTEEEEEEEEEEEETTTTEEEEEEEEEE--TTSS-EEEEEEEEE------SHHHHHHHHHHHHHHHHHHHHHHHHH-----..... CS
  PKD_channel  145 aeLkeknWLDrrtravfvdftlYnadinlfcvvtllvEvpalGgvlpsvsvqsvkLlryvtklslflllievvfvvfvlyfvveeilkirk..... 235 
                   ++Lk+++ +D+rtr v +   l +   ++ +  +l++E++ +G vlps    +   ++++ + + f   i ++f+ f+++    e+l ++      
   KOO23051.1 1010 NDLKRAHYVDARTRMVELLVPLTSNHLGVKSTARLMLEITSTGAVLPSYDTLTRVSRQFQIDDTDFWRKIGLAFTCFFCLMELPELLGLEDgvfel 1105
                   689***********99777777789999********************998887777777777777777788888888888887776654322211 PP

                   --.-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-SSS----HHHHHHHHHHHHHHHHHHHHHHHGGGGG--.------------ CS
  PKD_channel  236 er.asylrsvwnlldlaivvlsvvlivlailrevlakkllkkveaekeefldFrevaqldqllriilavlvflttlkllkvlr.fnktlslltktl 329 
                   +   +yl+++wn +d ++++l++++ +la     +a + +     ++  f+d + + + +  l+  la+  +l +lk++k++  +++++ l+ ++l
   KOO23051.1 1106 SDvIKYLSDIWNAMDWVVYILFIFVYILATSYLRNARSFVCGDFCTSIGFQDDHLAMTDARRLKFYLAMTSCLQLLKIMKIMAiLVPKMGLAPSVL 1201
                   23389************************99999999998877789999**999999999999*****************9873689********* PP

                   ----------HHHHHHHHHHHHHHHHHHSSSS-STTSSHHHHHHHHHHHHTT---HH.HHHHH-TTHHHHHHHHHHHHHHHHHHHHHHHHHHT CS
  PKD_channel  330 aralkdvlgfalvivilflayaqlgvllfGtqasnfsnlvksiltlfrlilgdfqyt.elesgnrvLGpllllalvflvifillnlflaiind 421 
                   ++a+ d++ f +v+ i ++a+a ++ +  G ++++f    +s++tl r + gdf+    +++    +  +l+l++ f  +fill +flai+ +
   KOO23051.1 1202 KKAMADLIFFGVVFGISVFAFANVLFIQLGPNMAEFASPLNSFVTLGRALFGDFDLDlIIDNSPDYMNTVLYLMYLFCAVFILLSMFLAILGE 1294
                   *********************************************************55788899*************************976 PP

>> Ion_trans  Ion transport protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.0      0.28   7.1e+02     123     156 ..     677     709 ..     664     762 .. 0.50
   2 !   41.4  13.4   3.8e-14   9.7e-11      32     243 ..    1072    1302 ..    1051    1304 .. 0.83

  Alignments for each domain:
  == domain 1  score: -0.8 bits;  conditional E-value: 0.28
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSC CS
   Ion_trans 123 lirsvkdllnvlllllvvlfifaligvqlfkgkl 156
                 +ir+v ++   + +  ++ f+f  i++ l  ++l
  KOO23051.1 677 VIRTVYAIASSVTVQTLMYFAFVYIVQMLV-RSL 709
                 444555555555555555555555543333.222 PP

  == domain 2  score: 41.4 bits;  conditional E-value: 3.8e-14
                  C.HHHHHHHHHHHHHHHHHHHHHHHHHTH.....HHHHHHCHSHHHHHHHHHHHHHHHHH.........HHHH........................ CS
   Ion_trans   32 k.tileilelvftaiftlemllkilalgl.....likkrYlrdpwnilDflvvlpsllsl.........vlse........................ 89  
                  + +++  + l+ft++f l  l ++l+l        +  +Yl+d+wn +D++v +++++++            +                        
  KOO23051.1 1072 DtDFWRKIGLAFTCFFCLMELPELLGLEDgvfelSDVIKYLSDIWNAMDWVVYILFIFVYilatsylrnA--Rsfvcgdfctsigfqddhlamtdar 1166
                  236888999999999999999999996666688888899*******************997666655540..0555666666677777788888888 PP

                  HHHHHHHHHHHHGGGGGGHHHCHS.HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH.HHHHTTSCCCCCCSCCSTSSSTTTSSSSSSHHHHHH CS
   Ion_trans   90 esllllsvlrlfrvlrllklisrl.eglrtlvtalirsvkdllnvlllllvvlfifalig.vqlfkgklreknecaktwenpnngntnFdnfftall 184 
                     + l++ +++++l+++k++  l +++      l++++ dl+ + +++ + +f+fa +  +ql                    +  +F + +++++
  KOO23051.1 1167 RLKFYLAMTSCLQLLKIMKIMAILvPKMGLAPSVLKKAMADLIFFGVVFGISVFAFANVLfIQLG------------------PNMAEFASPLNSFV 1245
                  788888888888888888888765166999999************************87734555..................46679********* PP

                  HHHHHHTTS.SHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
   Ion_trans  185 wlfrlmtte.gwgdilyatldekskvaliyfvifiilgsflllNlliaviadnfqelter 243 
                  +l r ++++ ++  i+++  d++   + ++++++++ ++f+ll++++a+  ++ ++l+++
  KOO23051.1 1246 TLGRALFGDfDLDLIIDNSPDYM---NTVLYLMYLFCAVFILLSMFLAILGEAQANLRDD 1302
                  *********99999999999999...***********************99988877765 PP

>> EF-hand_6  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.2   0.1   5.5e-05      0.14       4      27 ..     582     605 ..     579     608 .. 0.87
   2 !   17.2   0.0   1.3e-06    0.0033       1      27 [.     615     641 ..     615     647 .. 0.92

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 5.5e-05
   EF-hand_6   4 eaFklfDkdgdGkidaeElrkalr 27 
                  +F+l+D d++G++++ E+r+a +
  KOO23051.1 582 NLFELWDEDDNGQLNRIEFRRAAK 605
                 69******************9876 PP

  == domain 2  score: 17.2 bits;  conditional E-value: 1.3e-06
   EF-hand_6   1 elreaFklfDkdgdGkidaeElrkalr 27 
                 el+++F++ D++ dG+++ +El+++ r
  KOO23051.1 615 ELDAFFDIVDTNQDGTLSHAELMDVVR 641
                 6889********************998 PP

>> EF-hand_1  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.3   0.1   0.00034      0.87       3      27 ..     581     605 ..     579     607 .. 0.89
   2 !   19.9   0.2   1.4e-07   0.00035       1      27 [.     615     641 ..     615     642 .. 0.94

  Alignments for each domain:
  == domain 1  score: 9.3 bits;  conditional E-value: 0.00034
                 HHHHHHHTTTSSSEEEHHHHHHHHH CS
   EF-hand_1   3 keiFrefDkDgdGkIdfeEfkellk 27 
                  ++F++ D D +G++++ Ef+++ k
  KOO23051.1 581 TNLFELWDEDDNGQLNRIEFRRAAK 605
                 578******************9876 PP

  == domain 2  score: 19.9 bits;  conditional E-value: 1.4e-07
                 HHHHHHHHHTTTSSSEEEHHHHHHHHH CS
   EF-hand_1   1 elkeiFrefDkDgdGkIdfeEfkellk 27 
                 el+ +F+++D+++dG+++  E++++++
  KOO23051.1 615 ELDAFFDIVDTNQDGTLSHAELMDVVR 641
                 799********************9987 PP

>> EF-hand_7  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.8   1.3   2.1e-09   5.3e-06       2      69 ..     578     639 ..     577     641 .. 0.89

  Alignments for each domain:
  == domain 1  score: 26.8 bits;  conditional E-value: 2.1e-09
   EF-hand_7   2 eklkeaFkelDtdgdgyldkeellrllrkifqgagegsklsdeelellfkefDtdkdGvisfdEFlkl 69 
                 ++l   F++ D d++g l++ e++r+ +        g   ++eel+++f+ +Dt++dG++s  E++  
  KOO23051.1 578 DRLTNLFELWDEDDNGQLNRIEFRRAAK------ILGCRQTKEELDAFFDIVDTNQDGTLSHAELMDV 639
                 578899**********************......566666889******************9998866 PP

>> EF-hand_8  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.0   0.0    0.0083        21      28      49 ..     580     601 ..     576     603 .. 0.88
   2 !   23.8   0.2   1.2e-08     3e-05       2      52 ..     592     640 ..     591     642 .. 0.92

  Alignments for each domain:
  == domain 1  score: 5.0 bits;  conditional E-value: 0.0083
   EF-hand_8  28 vdilfrefDtdgdGkisfeEFc 49 
                 ++ lf + D+d++G ++  EF 
  KOO23051.1 580 LTNLFELWDEDDNGQLNRIEFR 601
                 56799999*************5 PP

  == domain 2  score: 23.8 bits;  conditional E-value: 1.2e-08
   EF-hand_8   2 kgkItreelrrilrilglkkglseeevdilfrefDtdgdGkisfeEFcvll 52 
                 +g++ r e+rr+++ilg +   ++ee+d+ f+ +Dt++dG++s  E ++++
  KOO23051.1 592 NGQLNRIEFRRAAKILGCR--QTKEELDAFFDIVDTNQDGTLSHAELMDVV 640
                 5777888************..8*************************9987 PP

>> EF-hand_5  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.2   0.2      0.23   5.9e+02       5      23 ..     584     602 ..     582     604 .. 0.87
   2 !   20.4   0.1   9.8e-08   0.00025       1      25 []     616     640 ..     616     640 .. 0.91

  Alignments for each domain:
  == domain 1  score: 0.2 bits;  conditional E-value: 0.23
                 HHHH-SS-SSCE-HHHHHH CS
   EF-hand_5   5 FqaiDlNgDGkIskeELkt 23 
                 F+  D +  G++++ E+++
  KOO23051.1 584 FELWDEDDNGQLNRIEFRR 602
                 677799***********97 PP

  == domain 2  score: 20.4 bits;  conditional E-value: 9.8e-08
                 HHHHHHHH-SS-SSCE-HHHHHHHH CS
   EF-hand_5   1 lkdtFqaiDlNgDGkIskeELktlv 25 
                 l+++F+ +D+N+DG++s+ EL+ +v
  KOO23051.1 616 LDAFFDIVDTNQDGTLSHAELMDVV 640
                 6889*****************9865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1575 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1062  (0.0592336); expected 358.6 (0.02)
Passed bias filter:                      651  (0.0363099); expected 358.6 (0.02)
Passed Vit filter:                        56  (0.00312343); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 1.06u 0.31s 00:00:01.37 Elapsed: 00:00:00.50
# Mc/sec: 9521.09
//
Query:       KOO23052.1  [L=439]
Description: hypothetical protein Ctob_005744 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.6e-12   46.4  21.8    1.3e-08   34.8   6.6    3.3  4  PqiA      Paraquat-inducible protein A


Domain annotation for each model (and alignments):
>> PqiA  Paraquat-inducible protein A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.9   2.7   2.8e-08   0.00051      36      77 ..      35      76 ..      33     120 .. 0.84
   2 ?   -2.4   0.0      0.21   3.8e+03     122     138 ..     135     151 ..     130     163 .. 0.73
   3 !   34.8   6.6   7.3e-13   1.3e-08      55     123 ..     286     351 ..     260     356 .. 0.81
   4 ?   -2.2   0.0      0.18   3.3e+03      36      59 ..     388     411 ..     384     414 .. 0.85

  Alignments for each domain:
  == domain 1  score: 19.9 bits;  conditional E-value: 2.8e-08
        PqiA 36 tllsgvlalweegswlvAllvflasilvPllkllllllllls 77
                tl++ +   w++g +++Allv++as+l P++kl+l lll++ 
  KOO23052.1 35 TLWGSIRDEWNAGTYFLALLVAVASLLWPFIKLALQLLLWWL 76
                99********************************99999875 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 0.21
        PqiA 122 siepgpgllafallvll 138
                 ++ p++g +af+  ++ 
  KOO23052.1 135 EVAPDTGTYAFISAMVP 151
                 67788888888877764 PP

  == domain 3  score: 34.8 bits;  conditional E-value: 7.3e-13
        PqiA  55 lvflasilvPllklllllllllslklgrrprgsrrllrlleflgrWsMldVfvvgilvalvklgdlasi 123
                  + ++++ +P+l+lll l l++      rp++++rll ++e+   W+MldVfvv +l +l  l ++a+ 
  KOO23052.1 286 GFYFTIVGMPVLCLLLALSLWMLP---LRPEHMHRLLMIVEAAAAWAMLDVFVVILLASLLSLDQFAQY 351
                 46789999****999888776655...358999********************************9985 PP

  == domain 4  score: -2.2 bits;  conditional E-value: 0.18
        PqiA  36 tllsgvlalweegswlvAllvfla 59 
                 tll   + l+++g   v l+vf++
  KOO23052.1 388 TLLRPFWLLFSSGLASVPLCVFVT 411
                 888899999999999999999997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (439 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       530  (0.029561); expected 358.6 (0.02)
Passed bias filter:                      236  (0.013163); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.25s 00:00:00.72 Elapsed: 00:00:00.41
# Mc/sec: 3249.48
//
Query:       KOO23053.1  [L=1050]
Description: hypothetical protein Ctob_005745 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.023   13.9   0.0       0.04   13.1   0.0    1.3  1  JHBP      Haemolymph juvenile hormone binding protein (JHBP)


Domain annotation for each model (and alignments):
>> JHBP  Haemolymph juvenile hormone binding protein (JHBP)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.0   2.2e-06      0.04     103     235 ..     281     414 ..     243     419 .. 0.77

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 2.2e-06
        JHBP 103 lkiefdltfpklslegkYkvdgkilll..pikgkGdfnitlenlkakvklkgkpvek...ngktylkitklkvklkvgkvkfkldnlfngnkelgdain 196
                 l + fd+++  ls ++      k++ l  p  g G ++itl n++ +++ k+++  +   +g+       + v++  ++vk++ +    g++  g+++ 
  KOO23053.1 281 LALSFDIELGYLSCQTAHGSTLKVMPLgyPSWGPGVMHITLGNTEGSMSAKVATTLTldiDGD----GLPVAVHFGTSDVKLDGSITITGEPTFGRILQ 375
                 55677777777777777777777766666************************5543212222....23566666666666666666779********* PP

        JHBP 197 kflnenwrellnelkpaieealskiftdilnkifkkvpy 235
                  ++n  +++l +el+++++  l+ ++ + l  ++++++ 
  KOO23053.1 376 PVINAQVEQLEQELQKNLTHLLEVTLSERLTHALSNLST 414
                 ******************************999999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1050 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       506  (0.0282224); expected 358.6 (0.02)
Passed bias filter:                      428  (0.0238719); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.73u 0.27s 00:00:01.00 Elapsed: 00:00:00.44
# Mc/sec: 7168.55
//
Query:       KOO23054.1  [L=333]
Description: hypothetical protein Ctob_005748 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (333 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       756  (0.0421663); expected 358.6 (0.02)
Passed bias filter:                      490  (0.02733); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.46u 0.22s 00:00:00.68 Elapsed: 00:00:00.37
# Mc/sec: 2673.22
//
Query:       KOO23055.1  [L=1452]
Description: hypothetical protein Ctob_005749 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
     0.0014   18.7   0.1     0.0033   17.5   0.1    1.7  1  WW        WW domain


Domain annotation for each model (and alignments):
>> WW  WW domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5   0.1   1.8e-07    0.0033       2      31 .]    1399    1427 ..    1398    1427 .. 0.94

  Alignments for each domain:
  == domain 1  score: 17.5 bits;  conditional E-value: 1.8e-07
                  -TTEEEEE-TTTT-EEEEETTT--EESS-- CS
          WW    2 PpGWeeqwdpdsGrvYYyNheTgetqWekP 31  
                  P GW e +d+  G  YY+    ge  We+P
  KOO23055.1 1399 PLGWTELTDEH-GTRYYHSALSGEVMWEHP 1427
                  78*****8888.*****************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1452 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       595  (0.0331865); expected 358.6 (0.02)
Passed bias filter:                      373  (0.0208043); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.80u 0.28s 00:00:01.08 Elapsed: 00:00:00.44
# Mc/sec: 9854.19
//
Query:       KOO23056.1  [L=1544]
Description: ubiquitin-protein pub4 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    7.1e-92  299.0  95.7    2.8e-09   36.7   0.2   31.7 32  Arm              Armadillo/beta-catenin-like repeat
    7.1e-19   67.7   3.2     0.0032   17.5   0.0   10.6 12  Atx10homo_assoc  Spinocerebellar ataxia type 10 protein domai
    5.7e-10   39.1  12.0     0.0011   18.4   0.1    7.9  8  DUF5578          Family of unknown function (DUF5578)
    2.6e-07   30.2   2.2       0.99    8.6   0.7    6.1  5  V-ATPase_H_N     V-ATPase subunit H
     0.0007   18.7  12.0        1.1    8.1   0.0    6.8  8  RICTOR_N         Rapamycin-insensitive companion of mTOR, N-t
     0.0012   18.9   2.3         21    5.1   0.0    6.1  7  Cnd1             non-SMC mitotic condensation complex subunit
     0.0014   18.0   0.0      0.004   16.6   0.0    1.7  1  EF-hand_5        EF hand
     0.0085   16.6   0.2     0.0085   16.6   0.2   14.0 16  HEAT_EZ          HEAT-like repeat
  ------ inclusion threshold ------
      0.017   15.5   1.7      0.017   15.5   1.7   12.1 12  HEAT_2           HEAT repeats
      0.018   14.5  11.6         15    4.9   0.2    7.3  9  Arm_2            Armadillo-like
      0.032   13.2   0.0       0.19   10.6   0.0    2.4  2  DUF913           Domain of Unknown Function (DUF913)
      0.073   12.7   0.2          6    6.5   0.1    3.7  3  MtrA             Tetrahydromethanopterin S-methyltransferase,
      0.096   12.3   0.0       0.28   10.8   0.0    1.7  1  EF-hand_1        EF hand
       0.12   11.9   2.4          1    8.9   0.1    3.5  3  MMS19_N          Dos2-interacting transcription regulator of 


Domain annotation for each model (and alignments):
>> Arm  Armadillo/beta-catenin-like repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.0   0.2     0.092   1.2e+02      21      41 .]       2      22 ..       1      22 [. 0.84
   2 !   24.5   0.1   1.5e-08   1.9e-05       2      40 ..      25      63 ..      24      64 .. 0.94
   3 ?    2.9   0.0     0.099   1.3e+02       2      20 ..      78      96 ..      77      98 .. 0.86
   4 !   36.7   0.2   2.2e-12   2.8e-09       7      41 .]     136     170 ..     130     170 .. 0.92
   5 !    8.6   0.0    0.0015         2       4      37 ..     175     208 ..     171     212 .. 0.88
   6 !   16.2   0.0     6e-06    0.0077       1      26 [.     214     240 ..     214     255 .. 0.75
   7 ?   -1.0   0.0       1.6   2.1e+03      16      35 ..     267     286 ..     265     288 .. 0.76
   8 !    8.0   0.0    0.0024       3.1       1      33 [.     297     329 ..     297     332 .. 0.89
   9 !    6.7   0.0     0.006       7.6      10      40 ..     348     386 ..     345     387 .. 0.73
  10 !   11.2   0.0   0.00023       0.3       3      22 ..     390     409 ..     388     415 .. 0.87
  11 !    8.4   0.3    0.0018       2.3      12      40 ..     441     469 ..     434     470 .. 0.93
  12 !   20.7   0.0   2.5e-07   0.00031       2      40 ..     472     510 ..     472     511 .. 0.94
  13 ?    0.3   0.1      0.61   7.8e+02      11      23 ..     526     539 ..     522     550 .. 0.83
  14 ?    0.9   0.1      0.42   5.4e+02      25      40 ..     651     666 ..     644     667 .. 0.83
  15 !   16.4   0.0   5.5e-06     0.007       5      41 .]     673     709 ..     671     709 .. 0.93
  16 !   17.7   0.0   2.1e-06    0.0026       3      41 .]     712     750 ..     710     750 .. 0.96
  17 ?    3.1   0.1     0.085   1.1e+02      18      37 ..     808     827 ..     804     831 .. 0.90
  18 !   16.5   1.0   4.9e-06    0.0063       7      40 ..     839     872 ..     836     873 .. 0.93
  19 ?   -0.1   0.0      0.82   1.1e+03      18      36 ..     887     905 ..     886     909 .. 0.87
  20 !   14.3   0.0   2.5e-05     0.031       1      23 [.     911     937 ..     911     955 .. 0.76
  21 !   20.0   0.7   3.9e-07    0.0005       1      41 []     957     997 ..     957     997 .. 0.96
  22 !    9.2   0.1   0.00097       1.2       4      36 ..    1002    1036 ..    1001    1041 .. 0.88
  23 !   22.4   0.0   6.9e-08   8.8e-05       2      36 ..    1044    1078 ..    1043    1079 .. 0.96
  24 ?    3.4   0.0     0.067        85       2      22 ..    1086    1106 ..    1085    1112 .. 0.85
  25 ?    1.8   0.1      0.21   2.7e+02      25      41 .]    1156    1172 ..    1154    1172 .. 0.91
  26 !   24.8   0.0   1.2e-08   1.5e-05       5      40 ..    1178    1215 ..    1174    1216 .. 0.92
  27 !    8.2   0.2     0.002       2.6       4      37 ..    1221    1254 ..    1218    1257 .. 0.92
  28 ?   -1.4   0.0       2.2   2.8e+03      32      41 .]    1319    1328 ..    1318    1328 .. 0.92
  29 !    9.5   0.0   0.00082         1       2      33 ..    1331    1362 ..    1330    1362 .. 0.91
  30 ?    4.3   0.0     0.034        44       2      25 ..    1417    1439 ..    1415    1455 .. 0.77
  31 !   11.0   0.1   0.00026      0.34       3      29 ..    1458    1484 ..    1456    1504 .. 0.81
  32 !    9.1   0.0     0.001       1.3       2      30 ..    1506    1536 ..    1505    1538 .. 0.82

  Alignments for each domain:
  == domain 1  score: 3.0 bits;  conditional E-value: 0.092
                TTTSSHHHHHHHHHHHHHHTT CS
         Arm 21 LssedeevqeeAawALsNLaa 41
                L++  ++ qe+Aa+AL+ La+
  KOO23056.1  2 LQDAGTSAQEQAAAALAKLAR 22
                66777889*********9986 PP

  == domain 2  score: 24.5 bits;  conditional E-value: 1.5e-08
                HHHHHHHHHTTHHHHHHHHTTTSSHHHHHHHHHHHHHHT CS
         Arm  2 senkdavieaGavppLvrLLssedeevqeeAawALsNLa 40
                 +n++ +++a+++ pL++LL+s++ + +e+Aa+A++ L 
  KOO23056.1 25 ADNRKSIVDANGIVPLLELLDSTSMKAKENAAAAITQLV 63
                68*********************************9986 PP

  == domain 3  score: 2.9 bits;  conditional E-value: 0.099
                HHHHHHHHHTTHHHHHHHH CS
         Arm  2 senkdavieaGavppLvrL 20
                 +n  ++ +aG+++ Lv  
  KOO23056.1 78 KDNQSVIAKAGGIEKLVGV 96
                689999**********965 PP

  == domain 4  score: 36.7 bits;  conditional E-value: 2.2e-12
                 HHHHTTHHHHHHHHTTTSSHHHHHHHHHHHHHHTT CS
         Arm   7 avieaGavppLvrLLssedeevqeeAawALsNLaa 41 
                 av e+G++ pLv++L+s d e+q +Aa+AL+NLa+
  KOO23056.1 136 AVAESGGIAPLVSMLNSSDAEMQANAAGALANLAR 170
                 788******************************97 PP

  == domain 5  score: 8.6 bits;  conditional E-value: 0.0015
                 HHHHHHHTTHHHHHHHHTTTSSHHHHHHHHHHHH CS
         Arm   4 nkdavieaGavppLvrLLssedeevqeeAawALs 37 
                 n  a+ + Gav pL++L + ++ e++ e+a A++
  KOO23056.1 175 NQSAIAKTGAVGPLCTLVREGSAETKDESAMAIW 208
                 7889*********************999987776 PP

  == domain 6  score: 16.2 bits;  conditional E-value: 6e-06
                 SHHHHHHHHHTTHHHHHHHHTT.TSSH CS
         Arm   1 nsenkdavieaGavppLvrLLs.sede 26 
                 n +nkd++ ++G+++pL+ LL+   ++
  KOO23056.1 214 NAPNKDTIAKLGGIDPLIGLLQnGSSQ 240
                 679*******************64444 PP

  == domain 7  score: -1.0 bits;  conditional E-value: 1.6
                 HHHHHTTTSSHHHHHHHHHH CS
         Arm  16 pLvrLLssedeevqeeAawA 35 
                 +Lv+LL s +++    A++ 
  KOO23056.1 267 RLVNLLGSSSVRSADKAVRV 286
                 7******9998876666655 PP

  == domain 8  score: 8.0 bits;  conditional E-value: 0.0024
                 SHHHHHHHHHTTHHHHHHHHTTTSSHHHHHHHH CS
         Arm   1 nsenkdavieaGavppLvrLLssedeevqeeAa 33 
                 +s+n +a+ +aG++ pL++ L s++ + + +Aa
  KOO23056.1 297 SSPNQMAISKAGGISPLITWLASTHITACAQAA 329
                 689****************99999988887776 PP

  == domain 9  score: 6.7 bits;  conditional E-value: 0.006
                 HTTHHHHHHHHTT........TSSHHHHHHHHHHHHHHT CS
         Arm  10 eaGavppLvrLLs........sedeevqeeAawALsNLa 40 
                 ++ ++ppL++L +           e  qe A++AL +La
  KOO23056.1 348 RSDGIPPLINLVKkaspdrrtVHAELAQEYACRALFHLA 386
                 5789*********99555555555556777777777776 PP

  == domain 10  score: 11.2 bits;  conditional E-value: 0.00023
                 HHHHHHHHTTHHHHHHHHTT CS
         Arm   3 enkdavieaGavppLvrLLs 22 
                 +n+ +++++ +++pLvr+L+
  KOO23056.1 390 DNRALIVDSHVMQPLVRMLT 409
                 79*****************9 PP

  == domain 11  score: 8.4 bits;  conditional E-value: 0.0018
                 THHHHHHHHTTTSSHHHHHHHHHHHHHHT CS
         Arm  12 GavppLvrLLssedeevqeeAawALsNLa 40 
                 Ga+ pLv+L ss+  + q++Aa++L+ +a
  KOO23056.1 441 GAIVPLVKLVSSGLHGAQQQAAATLAEIA 469
                 9999*********************9987 PP

  == domain 12  score: 20.7 bits;  conditional E-value: 2.5e-07
                 HHHHHHHHHTTHHHHHHHHTTTSSHHHHHHHHHHHHHHT CS
         Arm   2 senkdavieaGavppLvrLLssedeevqeeAawALsNLa 40 
                 s+n+da+ +aGa++pL+rL++s  ++  e Aa+ L++La
  KOO23056.1 472 SQNRDAIANAGAIEPLIRLMDSSTVGSPETAARVLAHLA 510
                 68**********************999999999999998 PP

  == domain 13  score: 0.3 bits;  conditional E-value: 0.61
                 TTHHHHHHHHTT.T CS
         Arm  11 aGavppLvrLLs.s 23 
                 +G+v +Lv++L+ s
  KOO23056.1 526 LGGVSRLVAMLDgS 539
                 69*********965 PP

  == domain 14  score: 0.9 bits;  conditional E-value: 0.42
                 SHHHHHHHHHHHHHHT CS
         Arm  25 deevqeeAawALsNLa 40 
                 +  +qe++a+AL+ La
  KOO23056.1 651 KMAMQEQSAAALAELA 666
                 5679*********998 PP

  == domain 15  score: 16.4 bits;  conditional E-value: 5.5e-06
                 HHHHHHTTHHHHHHHHTTTSSHHHHHHHHHHHHHHTT CS
         Arm   5 kdavieaGavppLvrLLssedeevqeeAawALsNLaa 41 
                  da+i aG+vppL+++++ ++   qe A +A+++L+a
  KOO23056.1 673 QDAIILAGGVPPLLAFIRIGSSVGQEHAGRAIWHLCA 709
                 688889******************************7 PP

  == domain 16  score: 17.7 bits;  conditional E-value: 2.1e-06
                 HHHHHHHHTTHHHHHHHHTTTSSHHHHHHHHHHHHHHTT CS
         Arm   3 enkdavieaGavppLvrLLssedeevqeeAawALsNLaa 41 
                 en ++++++G +  Lv L + ++++ qe+Aa+ Ls La+
  KOO23056.1 712 ENQKTIVRCGTITELVMLVRAGSPKAQEVAAAGLSELAR 750
                 899**********************************97 PP

  == domain 17  score: 3.1 bits;  conditional E-value: 0.085
                 HHHTTTSSHHHHHHHHHHHH CS
         Arm  18 vrLLssedeevqeeAawALs 37 
                 v+LLs+++ + q+ Aa +L+
  KOO23056.1 808 VSLLSNPSAGAQRRAAKTLQ 827
                 89**************9997 PP

  == domain 18  score: 16.5 bits;  conditional E-value: 4.9e-06
                 HHHHTTHHHHHHHHTTTSSHHHHHHHHHHHHHHT CS
         Arm   7 avieaGavppLvrLLssedeevqeeAawALsNLa 40 
                 ++++aGa+ pLv+LL  + + v+eeAa+AL+ L+
  KOO23056.1 839 LIVNAGAISPLVNLLALGITAVKEEAASALATLS 872
                 799***************************9776 PP

  == domain 19  score: -0.1 bits;  conditional E-value: 0.82
                 HHHTTTSSHHHHHHHHHHH CS
         Arm  18 vrLLssedeevqeeAawAL 36 
                 ++LL +++ e+qe +++ L
  KOO23056.1 887 ITLLGTGNAETQEHVTGLL 905
                 789***********99987 PP

  == domain 20  score: 14.3 bits;  conditional E-value: 2.5e-05
                 SHHHHHHHHHTTHHHHHHHHTT....T CS
         Arm   1 nsenkdavieaGavppLvrLLs....s 23 
                 +++n++a+ +aGa+p+Lv+ L+     
  KOO23056.1 911 DNDNRMAISKAGAIPRLVTQLRtmasP 937
                 699******************966544 PP

  == domain 21  score: 20.0 bits;  conditional E-value: 3.9e-07
                 SHHHHHHHHHTTHHHHHHHHTTTSSHHHHHHHHHHHHHHTT CS
         Arm   1 nsenkdavieaGavppLvrLLssedeevqeeAawALsNLaa 41 
                 +++n  a+  aG+v+ Lv LL s +   q  Aa++Ls L++
  KOO23056.1 957 SDKNVSAIATAGGVRSLVPLLASSSAAAQAHAAACLSDLCR 997
                 6899***********************************97 PP

  == domain 22  score: 9.2 bits;  conditional E-value: 0.00097
                  HHHHHHHTTHHHHHHHHTT..TSSHHHHHHHHHHH CS
         Arm    4 nkdavieaGavppLvrLLs..sedeevqeeAawAL 36  
                  nk a+   ++++ Lv+LLs    + +++ eAa+AL
  KOO23056.1 1002 NKNAILAENGIQMLVTLLSnpLSHSNTKAEAAGAL 1036
                  8999***************8878999999999998 PP

  == domain 23  score: 22.4 bits;  conditional E-value: 6.9e-08
                  HHHHHHHHHTTHHHHHHHHTTTSSHHHHHHHHHHH CS
         Arm    2 senkdavieaGavppLvrLLssedeevqeeAawAL 36  
                  +en +a+ +aGa++pLv+LL ++d   ++ Aa+A+
  KOO23056.1 1044 PENQKAIADAGAIKPLVALLGDDDNYARRKAAGAI 1078
                  79********************************8 PP

  == domain 24  score: 3.4 bits;  conditional E-value: 0.067
                  HHHHHHHHHTTHHHHHHHHTT CS
         Arm    2 senkdavieaGavppLvrLLs 22  
                    n dav + ++++ L++LL 
  KOO23056.1 1086 TANQDAVDKFNGIEKLIALLG 1106
                  6799***************97 PP

  == domain 25  score: 1.8 bits;  conditional E-value: 0.21
                  SHHHHHHHHHHHHHHTT CS
         Arm   25 deevqeeAawALsNLaa 41  
                  d+ev+ eAa+AL+ La+
  KOO23056.1 1156 DDEVRAEAAAALAVLAR 1172
                  899*********99986 PP

  == domain 26  score: 24.8 bits;  conditional E-value: 1.2e-08
                  HHHHHHTTHHHHHHHHTT..TSSHHHHHHHHHHHHHHT CS
         Arm    5 kdavieaGavppLvrLLs..sedeevqeeAawALsNLa 40  
                   d v + G+++pLv+LL+  + +e+ +eeAa+AL+ La
  KOO23056.1 1178 QDKVASVGGIEPLVALLQgdHVSERAKEEAAAALWSLA 1215
                  5778999****************************998 PP

  == domain 27  score: 8.2 bits;  conditional E-value: 0.002
                  HHHHHHHTTHHHHHHHHTTTSSHHHHHHHHHHHH CS
         Arm    4 nkdavieaGavppLvrLLssedeevqeeAawALs 37  
                  n + v eaG++ pL + +   + + qe+Aa+AL+
  KOO23056.1 1221 NQIKVAEAGGIAPLAAVIGLNSIRAQEQAAGALA 1254
                  677899**************************96 PP

  == domain 28  score: -1.4 bits;  conditional E-value: 2.2
                  HHHHHHHHTT CS
         Arm   32 AawALsNLaa 41  
                  Aa+A+s+La+
  KOO23056.1 1319 AARAISYLAR 1328
                  9*******97 PP

  == domain 29  score: 9.5 bits;  conditional E-value: 0.00082
                  HHHHHHHHHTTHHHHHHHHTTTSSHHHHHHHH CS
         Arm    2 senkdavieaGavppLvrLLssedeevqeeAa 33  
                  + n  a+  aG+v  Lv+LL+ e  +v++ Aa
  KOO23056.1 1331 PANQAAIAAAGGVGLLVSLLDAEEGGVLKRAA 1362
                  77999****************99999999887 PP

  == domain 30  score: 4.3 bits;  conditional E-value: 0.034
                  HHHHHHHHHTTHHHHHHHHTTTSS CS
         Arm    2 senkdavieaGavppLvrLLssed 25  
                  ++n +a  eaGa+ pL++LL+ ++
  KOO23056.1 1417 EQNQIAAKEAGAIMPLIALLE-GN 1439
                  5699999*************9.44 PP

  == domain 31  score: 11.0 bits;  conditional E-value: 0.00026
                  HHHHHHHHTTHHHHHHHHTTTSSHHHH CS
         Arm    3 enkdavieaGavppLvrLLssedeevq 29  
                   n  a+ e+G++ pLv+LL+ + +evq
  KOO23056.1 1458 ANQVAIAESGGIVPLVNLLRAGGPEVQ 1484
                  58899***************6666665 PP

  == domain 32  score: 9.1 bits;  conditional E-value: 0.001
                  HHHHHHHHHTTHHHHHHHHTT..TSSHHHHH CS
         Arm    2 senkdavieaGavppLvrLLs..sedeevqe 30  
                  + n+  + +aG++p Lv+L +  ++++e +e
  KOO23056.1 1506 PANRVSIADAGGIPLLVTLFDiaDGSDESKE 1536
                  569999*************998766666655 PP

>> Atx10homo_assoc  Spinocerebellar ataxia type 10 protein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.7   0.1      0.21   2.7e+02       8      68 ..      16      74 ..      10      93 .. 0.78
   2 !   11.2   0.0   0.00023      0.29       8      71 ..     122     183 ..     117     190 .. 0.88
   3 ?   -1.0   0.0       1.5   1.9e+03      46      70 ..     200     224 ..     189     229 .. 0.85
   4 ?   -3.4   0.0       8.1     1e+04       6      32 ..     284     313 ..     281     315 .. 0.69
   5 ?    1.3   0.0      0.27   3.4e+02       6      36 ..     330     359 ..     325     402 .. 0.71
   6 ?   -3.2   0.0       6.9   8.8e+03      32      59 ..     425     452 ..     417     480 .. 0.72
   7 !    6.0   0.0    0.0092        12       8      68 ..     661     718 ..     654     727 .. 0.86
   8 !    7.3   0.0    0.0037       4.7      42      69 ..     778     805 ..     770     816 .. 0.88
   9 ?    4.3   0.0     0.031        40       7      69 ..     990    1052 ..     984    1061 .. 0.88
  10 ?    3.8   0.0     0.044        56       6      32 ..    1075    1101 ..    1070    1105 .. 0.84
  11 !   17.5   0.0   2.5e-06    0.0032       2      69 ..    1160    1227 ..    1159    1234 .. 0.94
  12 ?   -2.5   0.0       4.3   5.4e+03       7      32 ..    1321    1346 ..    1317    1352 .. 0.69

  Alignments for each domain:
  == domain 1  score: 1.7 bits;  conditional E-value: 0.21
  Atx10homo_assoc  8 llgnlvyknkevqdkvreldgleliLsqcniDdnnPfirewailairnLlegneenqelva 68
                      l+ l+ ++ ++++ +++ +g+  +L+   +D+     +e a  ai +L+ +  e+ +  +
       KOO23056.1 16 ALAKLARESADNRKSIVDANGIVPLLEL--LDSTSMKAKENAAAAITQLVRKGVESSSQQE 74
                     6888999999999999999999999985..6888888899999999999887666554444 PP

  == domain 2  score: 11.2 bits;  conditional E-value: 0.00023
  Atx10homo_assoc   8 llgnlvyknkevqdkvreldgleliLsqcniDdnnPfirewailairnLlegneenqelvaeLe 71 
                       +  +++ n ++q  v e +g++ + s  n  d +  ++  a  a+ nL  + + nq+ +a+  
       KOO23056.1 122 AIKEMAFGNAKIQTAVAESGGIAPLVSMLNSSDAE--MQANAAGALANLARNHQINQSAIAKTG 183
                      677899*********************99876665..8999999****************9875 PP

  == domain 3  score: -1.0 bits;  conditional E-value: 1.5
  Atx10homo_assoc  46 rewailairnLlegneenqelvaeL 70 
                      ++ + +ai  +  +n+ n++ +a+L
       KOO23056.1 200 KDESAMAIWAISTDNAPNKDTIAKL 224
                      55678899999999******99998 PP

  == domain 4  score: -3.4 bits;  conditional E-value: 8.1
  Atx10homo_assoc   6 vrllgnl...vyknkevqdkvreldgleli 32 
                      vr+l+++   ++ ++ +q  + + +g++ +
       KOO23056.1 284 VRVLTTCkafTHGSSPNQMAISKAGGISPL 313
                      566666555578888888888888888765 PP

  == domain 5  score: 1.3 bits;  conditional E-value: 0.27
  Atx10homo_assoc   6 vrllgnlvyknkevqdkvreldgleliLsqc 36 
                      +++l+++  +n+++q+++ + dg++ +++ +
       KOO23056.1 330 MAVLSMIL-HNTTTQSQFARSDGIPPLINLV 359
                      55666555.578899*********9998754 PP

  == domain 6  score: -3.2 bits;  conditional E-value: 6.9
  Atx10homo_assoc  32 iLsqcniDdnnPfirewailairnLleg 59 
                       Ls+ n+D  n++ ++ ai+ + +L+ +
       KOO23056.1 425 RLSRGNVDVCNDCASKGAIVPLVKLVSS 452
                      4788888999999999998887777654 PP

  == domain 7  score: 6.0 bits;  conditional E-value: 0.0092
  Atx10homo_assoc   8 llgnlvyknkevqdkvreldgleliLsqcniDdnnPfirewailairnLlegneenqelva 68 
                       l+ l+  n e qd +   +g++ +L  ++i +   + +e+a  ai +L+ +  enq+ + 
       KOO23056.1 661 ALAELAKGNGELQDAIILAGGVPPLLAFIRIGS--SVGQEHAGRAIWHLCADI-ENQKTIV 718
                      68899999********************99976..589************986.5666654 PP

  == domain 8  score: 7.3 bits;  conditional E-value: 0.0037
  Atx10homo_assoc  42 nPfirewailairnLlegneenqelvae 69 
                       P  +++a  a++ L +gn+enq+++a+
       KOO23056.1 778 TPRAHQHASDALQRLADGNPENQAVIAK 805
                      688899********************97 PP

  == domain 9  score: 4.3 bits;  conditional E-value: 0.031
  Atx10homo_assoc    7 rllgnlvyknkevqdkvreldgleliLsqcniDdnnPfirewailairnLlegneenqelvae 69  
                       + l+ l+  + ++++ + +++g++++ +  +   ++   +  a  a+  L  g +enq+ +a+
       KOO23056.1  990 ACLSDLCRTSLRNKNAILAENGIQMLVTLLSNPLSHSNTKAEAAGALLALSSGQPENQKAIAD 1052
                       678999999999**********999999999999999999999999*************9987 PP

  == domain 10  score: 3.8 bits;  conditional E-value: 0.044
  Atx10homo_assoc    6 vrllgnlvyknkevqdkvreldgleli 32  
                          ++ + y+n+++qd v + +g+e +
       KOO23056.1 1075 AGAIAAIGYRNTANQDAVDKFNGIEKL 1101
                       55799999***************9976 PP

  == domain 11  score: 17.5 bits;  conditional E-value: 2.5e-06
  Atx10homo_assoc    2 KrelvrllgnlvyknkevqdkvreldgleliLsqcniDdnnPfirewailairnLlegneenqelvae 69  
                       ++e  + l+ l+ kn ++qdkv + +g+e +    + D+     +e a  a+  L ++  +nq  vae
       KOO23056.1 1160 RAEAAAALAVLARKNAKIQDKVASVGGIEPLVALLQGDHVSERAKEEAAAALWSLAKQHYANQIKVAE 1227
                       66777889*******************************************************99886 PP

  == domain 12  score: -2.5 bits;  conditional E-value: 4.3
  Atx10homo_assoc    7 rllgnlvyknkevqdkvreldgleli 32  
                       r +++l+  ++++q  + + +g+ l+
       KOO23056.1 1321 RAISYLARAHPANQAAIAAAGGVGLL 1346
                       56777777777777777777777665 PP

>> DUF5578  Family of unknown function (DUF5578)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.3   0.1      0.46     6e+02     220     255 ..      33      68 ..       4      76 .. 0.62
   2 ?    1.7   0.0      0.11   1.4e+02     216     257 ..     135     177 ..     110     185 .. 0.77
   3 ?    3.6   0.0     0.028        36     120     250 ..     198     336 ..     179     349 .. 0.73
   4 ?    2.7   0.1     0.055        70     141     253 ..     393     513 ..     369     527 .. 0.73
   5 ?   -0.4   0.0      0.48   6.1e+02     156     216 ..     646     711 ..     641     759 .. 0.65
   6 !   18.4   0.1   8.6e-07    0.0011     163     266 ..     780     890 ..     766     892 .. 0.82
   7 ?    4.3   0.0     0.018        23     101     186 ..     966    1050 ..     924    1106 .. 0.77
   8 !    6.6   0.0    0.0036       4.6     102     186 ..    1184    1267 ..    1171    1284 .. 0.88

  Alignments for each domain:
  == domain 1  score: -0.3 bits;  conditional E-value: 0.46
     DUF5578 220 kpsivepllelLkslhlevqyeaielikelmstevr 255
                   + + pllelL s+ ++ + +a   i +l+++ v+
  KOO23056.1  33 DANGIVPLLELLDSTSMKAKENAAAAITQLVRKGVE 68 
                 333444678888888888888888888887777665 PP

  == domain 2  score: 1.7 bits;  conditional E-value: 0.11
     DUF5578 216 vkeakpsivepllelLkslhlevqyeaielikelm.stevraa 257
                 +  a++  + pl+++L+s + e+q++a   + +l+ +++++++
  KOO23056.1 135 TAVAESGGIAPLVSMLNSSDAEMQANAAGALANLArNHQINQS 177
                 3456677899*****************9999999834466655 PP

  == domain 3  score: 3.6 bits;  conditional E-value: 0.028
     DUF5578 120 edkaealkllqlvanaGrkyKEliCEsygvravaeclakskseetqeeaqklleslaegnPkyqkqvykgliallacsspkaqqlalqtlrvvqeivke 218
                 e k e+   +  ++      K++i    g+  +  +l + +s+++ + +   l+sla+   + ++ + k l+ ll +ss ++   a++ l + +  ++ 
  KOO23056.1 198 ETKDESAMAIWAISTDNAPNKDTIAKLGGIDPLIGLLQNGSSQKSLDCVAGALTSLAHKHLDNRDYISKRLVNLLGSSSVRSADKAVRVLTTCKAFTHG 296
                 5566666677777777777889999999999999999999999999999999*****999999999999999999999988888777777766654433 PP

     DUF5578 219 ........akpsivepllelLkslhlevqyeaielikelm 250
                         +k   ++pl++ L+s+h+   ++a   + +++
  KOO23056.1 297 sspnqmaiSKAGGISPLITWLASTHITACAQAAMAVLSMI 336
                 0000000034456889999999999887766554444443 PP

  == domain 4  score: 2.7 bits;  conditional E-value: 0.055
     DUF5578 141 EliCEsygvravaeclakskseetqeeaqklleslaegnPkyqkqv.ykg....liallacsspkaqqlalqtlr...vv.qeivkeakpsivepllel 230
                  li +s+ ++ +  +l ++++e + e a  +l  l++gn +  +    kg    l+ l+++  + aqq a+ tl    +v q++   a+   +epl+ l
  KOO23056.1 393 ALIVDSHVMQPLVRML-TAETECAPELAAMVLVRLSRGNVDVCNDCaSKGaivpLVKLVSSGLHGAQQQAAATLAeiaLVsQNRDAIANAGAIEPLIRL 490
                 5788888888877776.567888999999999999999998766541343333377888888999***999888622233144445578999******* PP

     DUF5578 231 Lkslhlevqyeaielikelmste 253
                 + s  +     a +++ +l+ ++
  KOO23056.1 491 MDSSTVGSPETAARVLAHLAVED 513
                 *9999988888888888887654 PP

  == domain 5  score: -0.4 bits;  conditional E-value: 0.48
     DUF5578 156 lakskseetqeeaqklleslaegnPkyqkqvykg.....liallacsspkaqqlalqtlrvvqeiv 216
                 +a++++ + qe+  + l +la+gn ++q+ +  +     l+a +   s  +q  a +++  +   +
  KOO23056.1 646 IATANKMAMQEQSAAALAELAKGNGELQDAIILAggvppLLAFIRIGSSVGQEHAGRAIWHLCADI 711
                 677888888999999999999999998887643223333555555555555555555555544444 PP

  == domain 6  score: 18.4 bits;  conditional E-value: 8.6e-07
     DUF5578 163 etqeeaqklleslaegnPkyqkqvykgliallacsspkaqqlalqtlrvvqeivke.....akpsivepllelLkslhlevqyeaielikelm..stev 254
                 +++++a++ l+ la gnP+ q  + k  ++ll+  s  aq+ a++tl+++  +        ++   ++pl++lL+   + v+ ea + + +l   s   
  KOO23056.1 780 RAHQHASDALQRLADGNPENQAVIAKHAVSLLSNPSAGAQRRAAKTLQTLGARNLGspvliVNAGAISPLVNLLALGITAVKEEAASALATLSlnSPST 878
                 577899999*************************************99987765540111155667789******************999987324477 PP

     DUF5578 255 raallkglvalL 266
                 + a+ +g+++lL
  KOO23056.1 879 QLAISTGIITLL 890
                 888999999998 PP

  == domain 7  score: 4.3 bits;  conditional E-value: 0.018
     DUF5578  101 EiGGvltlleilglkqlkeedkaealkllqlvanaGrkyKEliCEsygvravaeclaksks.eetqeeaqklleslaegnPkyqkqv 186 
                    GGv +l+ +l  + +    +a+a  +l+ ++ +  + K+ i    g++ +  +l++  s ++t++ea   l  l++g P+ qk +
  KOO23056.1  966 TAGGVRSLVPLLASSSAA--AQAHAAACLSDLCRTSLRNKNAILAENGIQMLVTLLSNPLShSNTKAEAAGALLALSSGQPENQKAI 1050
                  579999999999887765..56777889****************************985442567777777788999****999876 PP

  == domain 8  score: 6.6 bits;  conditional E-value: 0.0036
     DUF5578  102 iGGvltlleilglkqlkeedkaealkllqlvanaGrkyKEliCEsygvravaeclakskseetqeeaqklleslaegnPkyqkqv 186 
                  +GG+  l+ +l+ ++++e+ k+ea   l  +a+     +  + E+ g+  +a ++   +s ++qe+a   l  la  nP+    +
  KOO23056.1 1184 VGGIEPLVALLQGDHVSERAKEEAAAALWSLAKQHYANQIKVAEAGGIAPLAAVIGL-NSIRAQEQAAGALAALALDNPQNVVAI 1267
                  8******************************998777777889*********99986.78899****************976655 PP

>> V-ATPase_H_N  V-ATPase subunit H
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.6   0.7   0.00078      0.99     101     200 ..     259     360 ..       8     373 .. 0.79
   2 !    6.0   0.0     0.005       6.4      93     200 ..     382     492 ..     368     503 .. 0.77
   3 !    5.4   0.1    0.0073       9.3     160     201 ..     942    1024 ..     849    1088 .. 0.71
   4 ?   -4.2   0.0       6.3   8.1e+03     163     199 ..    1313    1350 ..    1290    1358 .. 0.79
   5 ?   -1.0   0.0      0.67   8.6e+02     165     206 ..    1491    1531 ..    1397    1539 .. 0.79

  Alignments for each domain:
  == domain 1  score: 8.6 bits;  conditional E-value: 0.00078
  V-ATPase_H_N 101 eeqd.pwkpflkllnrqddfivllalrllakllvqgkkksnklv....esaLnrllqlLssqlssstnevieiavrllqellrtkeyRelfveadgv 192
                   +++d + k +++ll ++     ++a+r+l++  ++ + +s+++        +  l+++L s+         + a+  l+++l++    ++f  +dg+
    KOO23056.1 259 DNRDyISKRLVNLLGSSSVRSADKAVRVLTTCKAFTHGSSPNQMaiskAGGISPLITWLASTHIT---ACAQAAMAVLSMILHNTTTQSQFARSDGI 352
                   22224666666666666667777777777777777777777744553333346667776663333...24599************************ PP

  V-ATPase_H_N 193 stlisilr 200
                   ++li++ +
    KOO23056.1 353 PPLINLVK 360
                   ****9883 PP

  == domain 2  score: 6.0 bits;  conditional E-value: 0.005
  V-ATPase_H_N  93 lflslakkeeqd......pwkpflkllnrqddfivllalrllakllvqgkkksnklv.esaLnrllqlLssqlssstnevieiavrllqellrtkey 182
                   lf+  ++ +++       +++p++++l+ + +  ++la+ +l++l + + +  n    + a+  l++l+ss l+      ++ a+  l+e++ +++ 
    KOO23056.1 382 LFHLASQADNRAlivdshVMQPLVRMLTAETECAPELAAMVLVRLSRGNVDVCNDCAsKGAIVPLVKLVSSGLHG----AQQQAAATLAEIALVSQN 474
                   444444433333566666899999999999999999999999999999888887766678888888998888877....357889999999999999 PP

  V-ATPase_H_N 183 Relfveadgvstlisilr 200
                   R ++ +a  +++li+++ 
    KOO23056.1 475 RDAIANAGAIEPLIRLMD 492
                   999999999999999984 PP

  == domain 3  score: 5.4 bits;  conditional E-value: 0.0073
  V-ATPase_H_N  160 s.....................................stnevieiavrllqellrtk.eyRelfveadgvstlisilr...s 201 
                    s                                     s++  ++ a+ +l+ l rt+ + + +++ ++g+++l+++l+   s
    KOO23056.1  942 SqelaaavlarlsgdsdknvsaiataggvrslvpllasSSAAAQAHAAACLSDLCRTSlRNKNAILAENGIQMLVTLLSnplS 1024
                    04444444444444444444444444444444444444788888999999999999984677888889999999999963330 PP

  == domain 4  score: -4.2 bits;  conditional E-value: 6.3
  V-ATPase_H_N  163 nevieiavrllqellrtkeyRelfve.adgvstlisil 199 
                     +  + a+r+++ l+r     ++++  a gv++l+s+l
    KOO23056.1 1313 KQASAKAARAISYLARAHPANQAAIAaAGGVGLLVSLL 1350
                    45557789999999999999999988888999999998 PP

  == domain 5  score: -1.0 bits;  conditional E-value: 0.67
  V-ATPase_H_N  165 vieiavrllqellrtkeyRelfveadgvstlisilrstvans 206 
                     +e+a+ +l +l+r  + R  + +a g+++l+++  +++  s
    KOO23056.1 1491 AQETAAGALHALARAPANRVSIADAGGIPLLVTLF-DIADGS 1531
                    4599999**********************999977.444444 PP

>> RICTOR_N  Rapamycin-insensitive companion of mTOR, N-term
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   0.0       2.7   3.5e+03     139     175 ..      27      63 ..      15      81 .. 0.75
   2 ?    3.2   0.0     0.028        36     125     183 ..     116     177 ..     110     211 .. 0.80
   3 ?   -0.4   0.0      0.34   4.3e+02     141     178 ..     219     256 ..     216     292 .. 0.74
   4 ?    0.1   0.0      0.25   3.2e+02     140     182 ..     301     343 ..     297     352 .. 0.79
   5 !    5.5   0.3    0.0056       7.2      46     173 ..     379     508 ..     370     514 .. 0.77
   6 ?    0.0   0.0      0.26   3.3e+02     137     186 ..     834     884 ..     800     898 .. 0.83
   7 !    8.1   0.0   0.00087       1.1     111     197 ..     971    1063 ..     931    1105 .. 0.73
   8 ?    0.7   0.0      0.16     2e+02      92     180 ..    1171    1263 ..    1156    1326 .. 0.69

  Alignments for each domain:
  == domain 1  score: -3.4 bits;  conditional E-value: 2.7
    RICTOR_N 139 dpelvveagGlrvllnalldgsselaesllvallylL 175
                 +++ +v a+G+  ll++l   s++++e  ++a+ +l+
  KOO23056.1  27 NRKSIVDANGIVPLLELLDSTSMKAKENAAAAITQLV 63 
                 5566777888888888887788888888777777665 PP

  == domain 2  score: 3.2 bits;  conditional E-value: 0.028
    RICTOR_N 125 rricletLaElllldpel...vveagGlrvllnalldgsselaesllvallylLdspetrky 183
                 +r   e + E+++ + ++   v+e+gG+  l+++l  + +e++   + al +l  ++++ + 
  KOO23056.1 116 CRLTAEAIKEMAFGNAKIqtaVAESGGIAPLVSMLNSSDAEMQANAAGALANLARNHQINQS 177
                 566667777777777665444999**************************999988887765 PP

  == domain 3  score: -0.4 bits;  conditional E-value: 0.34
    RICTOR_N 141 elvveagGlrvllnalldgsselaesllvallylLdsp 178
                 + +++ gG++ l+ +l++gss+ + ++++  l  L ++
  KOO23056.1 219 DTIAKLGGIDPLIGLLQNGSSQKSLDCVAGALTSLAHK 256
                 678899************77766666666555544443 PP

  == domain 4  score: 0.1 bits;  conditional E-value: 0.25
    RICTOR_N 140 pelvveagGlrvllnalldgsselaesllvallylLdspetrk 182
                  + + +agG++ l+  l+  ++ +    ++a+l+++ +++t +
  KOO23056.1 301 QMAISKAGGISPLITWLASTHITACAQAAMAVLSMILHNTTTQ 343
                 567899************9777777777777887777777654 PP

  == domain 5  score: 5.5 bits;  conditional E-value: 0.0056
    RICTOR_N  46 yRilRylisdseslklllklkldiliirSLekdsksevEReqALkLir...afleikkgakelsksvvralvavaehedDrlrricletLaEllll..d 139
                  R+l +l s+ ++  l++++++   ++r L  + ++  E  +A+ L+r     +++    ++ sk+ +  lv ++ ++    ++ + +tLaE++l+  +
  KOO23056.1 379 CRALFHLASQADNRALIVDSHVMQPLVRMLTAETECAPE-LAAMVLVRlsrGNVDV--CNDCASKGAIVPLVKLVSSGLHGAQQQAAATLAEIALVsqN 474
                 577778888888888888888888888888888888888.4566555510044555..33469999999999999999999999*********997447 PP

    RICTOR_N 140 pelvveagGlrvllnalldgsselaesllvally 173
                 ++ +++ag+++ l++++  ++    e+ + +l +
  KOO23056.1 475 RDAIANAGAIEPLIRLMDSSTVGSPETAARVLAH 508
                 899************9987666666666666655 PP

  == domain 6  score: 0.0 bits;  conditional E-value: 0.26
    RICTOR_N 137 lldpelvveagGlrvllnalldgsselaesllvallyl.Ldspetrkylrk 186
                 l  p l+v+ag+++ l+n+l+ g   ++e  ++al  l L+sp+t   + +
  KOO23056.1 834 LGSPVLIVNAGAISPLVNLLALGITAVKEEAASALATLsLNSPSTQLAIST 884
                 56799***********************99999998876899998776655 PP

  == domain 7  score: 8.1 bits;  conditional E-value: 0.00087
    RICTOR_N  111 ralvavaehed...DrlrricletLaElllldpelvveagGlrvllnalld..gsselaesllvallylLd.spetrkylrkgldleillspf 197 
                  r+lv +  ++       +++cl  L+  +l++ + +++ +G+++l+ +l++  ++s+ +   + all l +  pe  k +     ++ l++ +
  KOO23056.1  971 RSLVPLLASSSaaaQAHAAACLSDLCRTSLRNKNAILAENGIQMLVTLLSNplSHSNTKAEAAGALLALSSgQPENQKAIADAGAIKPLVALL 1063
                  55555555333333566889******************************9988888888888899887652455555555555555555555 PP

  == domain 8  score: 0.7 bits;  conditional E-value: 0.16
    RICTOR_N   92 irafleikkgakelsksvvralvavae..hedDrlrr...icletLaElllldpelvveagGlrvllnalldgsselaesllvallyl.Ldspet 180 
                   r+  +i++++   s + ++ lva+ +  h  +r +    ++l  La     +   v+eagG+  l+ ++  +s++++e  + al  l Ld+p+ 
  KOO23056.1 1171 ARKNAKIQDKV--ASVGGIEPLVALLQgdHVSERAKEeaaAALWSLAKQHYANQIKVAEAGGIAPLAAVIGLNSIRAQEQAAGALAALaLDNPQN 1263
                  56666665555..777777778888776655555544000445555555667777899*************9**********9998874666654 PP

>> Cnd1  non-SMC mitotic condensation complex subunit 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.4   0.1      0.11   1.5e+02      30      89 ..       2      69 ..       1      88 [. 0.71
   2 ?    2.1   0.0      0.14   1.8e+02      54      89 ..     137     172 ..     129     279 .. 0.82
   3 ?   -3.4   0.0       6.7   8.6e+03     120     152 ..     401     433 ..     396     478 .. 0.54
   4 ?   -3.1   0.0       5.7   7.3e+03      39      60 ..     500     522 ..     499     527 .. 0.82
   5 ?    1.8   0.0      0.17   2.2e+02      49     132 ..     835     914 ..     809     935 .. 0.82
   6 ?   -0.7   0.0         1   1.3e+03      53     105 ..     963    1019 ..     924    1053 .. 0.59
   7 ?    5.1   0.0     0.017        21      23      65 ..    1056    1103 ..    1047    1109 .. 0.79

  Alignments for each domain:
  == domain 1  score: 2.4 bits;  conditional E-value: 0.11
        Cnd1 30 LkDedpyVRktaaivvakL.....ilndmvkekgflselaklleDenprVvanalaalteisek...s 89
                L+D     +++aa ++akL      +++ + + + +  l++ll+ ++ +  +na aa+t++ +k   s
  KOO23056.1  2 LQDAGTSAQEQAAAALAKLaresaDNRKSIVDANGIVPLLELLDSTSMKAKENAAAAITQLVRKgveS 69
                77888888899999999997776433345556666888999999999999999999999998884432 PP

  == domain 2  score: 2.1 bits;  conditional E-value: 0.14
        Cnd1  54 vkekgflselaklleDenprVvanalaalteiseks 89 
                 v e+g ++ l ++l+ ++++ +ana  al +++++ 
  KOO23056.1 137 VAESGGIAPLVSMLNSSDAEMQANAAGALANLARNH 172
                 667777888888888888888888888888877763 PP

  == domain 3  score: -3.4 bits;  conditional E-value: 6.7
        Cnd1 120 lefLlsyipkdkqeaeslveklcprlqhansav 152
                 ++ L+++ + +++ a +l+  +  rl+  n +v
  KOO23056.1 401 MQPLVRMLTAETECAPELAAMVLVRLSRGNVDV 433
                 444444444444444455555555554444444 PP

  == domain 4  score: -3.1 bits;  conditional E-value: 5.7
        Cnd1  39 ktaaivvakL.ilndmvkekgfl 60 
                 +taa v+a+L ++ d + ++g l
  KOO23056.1 500 ETAARVLAHLaVEDDKIDDSGSL 522
                 599*******9999999999944 PP

  == domain 5  score: 1.8 bits;  conditional E-value: 0.17
        Cnd1  49 ilndmvkekgflselaklleDenprVvanalaalteiseksenaiynllpdiisklsdalnecsewgqitilefLlsyipkdkq 132
                  ++ ++ + g +s l +ll    + V + a +al  +s +s+++ + +   ii  l     + + ++q ++  +Ll+  +++++
  KOO23056.1 835 GSPVLIVNAGAISPLVNLLALGITAVKEEAASALATLSLNSPSTQLAISTGIITLLG----TGNAETQEHVTGLLLTLSQDNDN 914
                 4556788889999999999999999****************************9999....55888888888888887777666 PP

  == domain 6  score: -0.7 bits;  conditional E-value: 1
        Cnd1   53 mvkekgflselaklleDenprVvanalaalteisek...senaiynll.pdiiskls 105 
                   +   g +  l  ll  +++  +a a a+l+++ +    ++nai+  + ++++  l+
  KOO23056.1  963 AIATAGGVRSLVPLLASSSAAAQAHAAACLSDLCRTslrNKNAILAENgIQMLVTLL 1019
                  455566666666667777777777777777777666554445544322233333333 PP

  == domain 7  score: 5.1 bits;  conditional E-value: 0.017
        Cnd1   23 vepLrkrLkDedpyVRktaaivvakL.....ilndmvkekgflselak 65  
                  ++pL + L D+d y R+ aa ++a +      ++d v + + +++l  
  KOO23056.1 1056 IKPLVALLGDDDNYARRKAAGAIAAIgyrntANQDAVDKFNGIEKLIA 1103
                  789*********************998665555566666666666655 PP

>> EF-hand_5  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   0.0   3.1e-06     0.004       7      22 ..    1278    1293 ..    1272    1295 .. 0.90

  Alignments for each domain:
  == domain 1  score: 16.6 bits;  conditional E-value: 3.1e-06
                  HH-SS-SSCE-HHHHH CS
   EF-hand_5    7 aiDlNgDGkIskeELk 22  
                   +D++gDGk+s+ EL 
  KOO23056.1 1278 VMDTDGDGKVSMAELA 1293
                  59************95 PP

>> HEAT_EZ  HEAT-like repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.5   1.1     0.086   1.1e+02       4      55 .]      10      62 ..       8      62 .. 0.67
   2 !   16.6   0.2   6.7e-06    0.0085      10      55 .]     122     168 ..     117     168 .. 0.80
   3 ?   -0.8   0.1       1.8   2.3e+03       7      54 ..     206     252 ..     204     253 .. 0.53
   4 ?   -2.3   0.0       5.3   6.8e+03      31      50 ..     266     285 ..     260     288 .. 0.63
   5 ?   -1.7   0.4       3.6   4.6e+03       5      44 ..     459     496 ..     456     509 .. 0.57
   6 ?    2.0   0.4      0.24   3.1e+02       4      24 ..     655     675 ..     653     690 .. 0.75
   7 ?   -1.6   0.0       3.3   4.2e+03       7      43 ..     741     778 ..     738     782 .. 0.67
   8 ?   -0.9   0.2         2   2.6e+03       6      48 ..     784     823 ..     779     831 .. 0.72
   9 ?    1.6   0.0      0.32   4.1e+02       2      34 ..     859     891 ..     858     905 .. 0.71
  10 ?    1.8   3.7      0.28   3.5e+02       4      53 ..     943     993 ..     940     995 .. 0.71
  11 !   13.3   1.9   6.9e-05     0.089       6      55 .]    1034    1081 ..    1030    1081 .. 0.70
  12 ?    3.7   2.5     0.073        93       1      42 [.    1157    1199 ..    1157    1216 .. 0.73
  13 ?   -1.5   2.0       3.1   3.9e+03       6      54 ..    1209    1255 ..    1202    1268 .. 0.62
  14 ?   -1.0   0.3       2.1   2.7e+03       4      15 ..    1246    1257 ..    1243    1275 .. 0.56
  15 ?   -2.5   0.4       6.4   8.2e+03      30      51 ..    1289    1306 ..    1286    1306 .. 0.82
  16 ?   -0.1   0.6       1.1   1.5e+03       6      44 ..    1448    1483 ..    1442    1504 .. 0.79

  Alignments for each domain:
  == domain 1  score: 3.5 bits;  conditional E-value: 0.086
     HEAT_EZ  4 RraAawaLGr.laggepellqplvpeilpaLlalLnddsdeVRaaAagaLgnl 55
                ++ Aa+aL+  + + +++  + +    + +Ll lL + s + +++Aa a+++l
  KOO23056.1 10 QEQAAAALAKlARESADNRKSIVDANGIVPLLELLDSTSMKAKENAAAAITQL 62
                688999998865555555544444444444555887777799********997 PP

  == domain 2  score: 16.6 bits;  conditional E-value: 6.7e-06
     HEAT_EZ  10 aLGrlaggepellqp.lvpeilpaLlalLnddsdeVRaaAagaLgnl 55 
                 a+ ++a+g++  +   + +  +++L+++Ln++++e +a+AagaL+nl
  KOO23056.1 122 AIKEMAFGNAKIQTAvAESGGIAPLVSMLNSSDAEMQANAAGALANL 168
                 55556666666666667777899*********************997 PP

  == domain 3  score: -0.8 bits;  conditional E-value: 1.8
     HEAT_EZ   7 AawaLGr..laggepellqplvpeilpaLlalLnddsd.eVRaaAagaLgn 54 
                 A+wa+++  ++  +++++  +    +++L+ lL++ s+ +    +agaL+ 
  KOO23056.1 206 AIWAISTdnAP--NKDTI--AKLGGIDPLIGLLQNGSSqKSLDCVAGALTS 252
                 67777666333..23322..2334456666666553333777777777765 PP

  == domain 4  score: -2.3 bits;  conditional E-value: 5.3
     HEAT_EZ  31 paLlalLnddsdeVRaaAag 50 
                 + L++lL ++s +   +A++
  KOO23056.1 266 KRLVNLLGSSSVRSADKAVR 285
                 67999995554444555555 PP

  == domain 5  score: -1.7 bits;  conditional E-value: 3.6
     HEAT_EZ   5 raAawaLGr..laggepellqplvpeilpaLlalLnddsdeV 44 
                   Aa++L++  l ++++++++     ++ +L++l+  ds++V
  KOO23056.1 459 QQAAATLAEiaLVSQNRDAIA--NAGAIEPLIRLM--DSSTV 496
                 567888877654444444433..345667777666..55554 PP

  == domain 6  score: 2.0 bits;  conditional E-value: 0.24
     HEAT_EZ   4 RraAawaLGrlaggepellqp 24 
                 ++  a+aL++la g++el+  
  KOO23056.1 655 QEQSAAALAELAKGNGELQDA 675
                 7899*************9764 PP

  == domain 7  score: -1.6 bits;  conditional E-value: 3.3
     HEAT_EZ   7 AawaLGr.laggepellqp.lvpeilpaLlalLnddsde 43 
                 Aa++L++ + gg +ell++ ++++i +a + +L+dd  +
  KOO23056.1 741 AAAGLSElARGGVAELLRQqEHKDIYRAEG-TLMDDGIT 778
                 788998888888888888845555554444.66666655 PP

  == domain 8  score: -0.9 bits;  conditional E-value: 2
     HEAT_EZ   6 aAawaLGrlaggepellqplvpeilpaLlalLnddsd.eVRaaA 48 
                 +A  aL rla g+pe ++    +i +  ++lL+++s+ + R aA
  KOO23056.1 784 HASDALQRLADGNPENQA----VIAKHAVSLLSNPSAgAQRRAA 823
                 567788778888888888....8888888888888885554443 PP

  == domain 9  score: 1.6 bits;  conditional E-value: 0.32
     HEAT_EZ   2 rvRraAawaLGrlaggepellqplvpeilpaLl 34 
                 +v++ Aa+aL++l  + p ++    + i+ +L+
  KOO23056.1 859 AVKEEAASALATLSLNSPSTQLAISTGIITLLG 891
                 699********9876777776655555555554 PP

  == domain 10  score: 1.8 bits;  conditional E-value: 0.28
     HEAT_EZ   4 RraAawaLGrlaggepellqp.lvpeilpaLlalLnddsdeVRaaAagaLg 53 
                 ++ Aa++L+rl g  +  ++  +    ++ L++lL ++s++ +a Aa +L+
  KOO23056.1 943 QELAAAVLARLSGDSDKNVSAiATAGGVRSLVPLLASSSAAAQAHAAACLS 993
                 677888887755333333333477777888999999999999*****9998 PP

  == domain 11  score: 13.3 bits;  conditional E-value: 6.9e-05
     HEAT_EZ    6 aAawaLGr..laggepellqplvpeilpaLlalLnddsdeVRaaAagaLgnl 55  
                  +A++aL++  ++++ + +++     ++++L+alL dd+   R +Aaga++++
  KOO23056.1 1034 GALLALSSgqPENQKAIADA----GAIKPLVALLGDDDNYARRKAAGAIAAI 1081
                  78899995555555555555....66666666666666688*******9876 PP

  == domain 12  score: 3.7 bits;  conditional E-value: 0.073
     HEAT_EZ    1 wrvRraAawaLGrlaggepellqp.lvpeilpaLlalLnddsd 42  
                  ++vR+ Aa+aL+ la  ++  + + +    + +L+alL+ d+ 
  KOO23056.1 1157 DEVRAEAAAALAVLARKNAKIQDKvASVGGIEPLVALLQGDHV 1199
                  589********99998888888777888888888888865544 PP

  == domain 13  score: -1.5 bits;  conditional E-value: 3.1
     HEAT_EZ    6 aAawaLGrlaggepellqplvpeilpaLlalLnddsdeVRaaAagaLgn 54  
                  aA+w L+   ++ +++++ +    +++L+a     s + +++AagaL++
  KOO23056.1 1209 AALWSLA--KQHYANQIKVAEAGGIAPLAAVIGLNSIRAQEQAAGALAA 1255
                  5555555..5555555555555555555555544555666666666665 PP

  == domain 14  score: -1.0 bits;  conditional E-value: 2.1
     HEAT_EZ    4 RraAawaLGrla 15  
                  ++ Aa aL++la
  KOO23056.1 1246 QEQAAGALAALA 1257
                  556666666655 PP

  == domain 15  score: -2.5 bits;  conditional E-value: 6.4
     HEAT_EZ   30 lpaLlalLnddsd.eVRaaAaga 51  
                  +++L+     + d + +aaAa+a
  KOO23056.1 1289 MAELA-----SRDrAPKAAAARA 1306
                  78889.....999566*****98 PP

  == domain 16  score: -0.1 bits;  conditional E-value: 1.1
     HEAT_EZ    6 aAawaLGrlaggepellqplvpeilpaLlalLnddsdeV 44  
                  +A+w L+   ++e+++++ + +  + +L++lL+   +eV
  KOO23056.1 1448 GALWSLA---AHEANQVAIAESGGIVPLVNLLRAGGPEV 1483
                  6899998...88888988888888888998888776655 PP

>> HEAT_2  HEAT repeats
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.5   0.4      0.15     2e+02      17      58 ..      10      62 ..       1      80 [. 0.64
   2 ?    9.2   0.2    0.0013       1.6      28      75 ..     138     196 ..     114     211 .. 0.60
   3 ?    0.9   0.0      0.49   6.2e+02      33      78 ..     310     366 ..     265     376 .. 0.48
   4 ?   -0.1   0.0      0.96   1.2e+03      26      48 ..     345     367 ..     310     411 .. 0.68
   5 ?    3.2   0.8     0.094   1.2e+02      26      76 ..     436     496 ..     402     507 .. 0.73
   6 ?   -0.3   0.0       1.1   1.4e+03      19      69 ..     702     759 ..     683     770 .. 0.69
   7 ?    4.6   1.8     0.033        42      33      88 .]     804     869 ..     779     869 .. 0.65
   8 ?    0.5   3.2      0.65   8.4e+02      27      58 ..     964     995 ..     924    1036 .. 0.61
   9 ?   15.5   1.7   1.3e-05     0.017      13      60 ..    1025    1083 ..    1012    1095 .. 0.67
  10 ?   -0.0   8.9      0.91   1.2e+03      44      87 ..    1156    1211 ..    1151    1272 .. 0.69
  11 ?   -2.1   0.9       4.2   5.4e+03      17      42 ..    1319    1352 ..    1291    1365 .. 0.48
  12 ?   -1.3   0.1       2.2   2.9e+03      45      54 ..    1485    1494 ..    1448    1527 .. 0.61

  Alignments for each domain:
  == domain 1  score: 2.5 bits;  conditional E-value: 0.15
      HEAT_2 17 rraairaLgrignpea...........lpaLvellededpavRraaaeaLgai 58
                + +a+ aL++++ ++a           +  L+ell+++++   ++aa a+ ++
  KOO23056.1 10 QEQAAAALAKLARESAdnrksivdangIVPLLELLDSTSMKAKENAAAAITQL 62
                45566666655555333333344445577888888888888888888888765 PP

  == domain 2  score: 9.2 bits;  conditional E-value: 0.0013
      HEAT_2  28 gnpealpaLvellededpavRraaaeaLg...........aigdpealpaLkelldddd 75 
                 ++   ++ Lv++l+++d++ +++aa aL+           ai+   a+  L+ l+++ +
  KOO23056.1 138 AESGGIAPLVSMLNSSDAEMQANAAGALAnlarnhqinqsAIAKTGAVGPLCTLVREGS 196
                 33355999********************9222222222222234557777777666554 PP

  == domain 3  score: 0.9 bits;  conditional E-value: 0.49
      HEAT_2  33 lpaLvelleded.pavRraaaeaLg..........aigdpealpaLkellddddddv 78 
                 +  L+ +l +++ +a  +aa   L+          ++++++ +p L  l++  + d+
  KOO23056.1 310 ISPLITWLASTHiTACAQAAMAVLSmilhntttqsQFARSDGIPPLINLVKKASPDR 366
                 555555554433144444444444422222222223345556666666555444333 PP

  == domain 4  score: -0.1 bits;  conditional E-value: 0.96
      HEAT_2  26 rignpealpaLvellededpavR 48 
                 +++  + +p L++l++ ++p+ R
  KOO23056.1 345 QFARSDGIPPLINLVKKASPDRR 367
                 56666777777777765555433 PP

  == domain 5  score: 3.2 bits;  conditional E-value: 0.094
      HEAT_2  26 rignpealpaLvellededpavRraaaeaLgaig..........dpealpaLkellddddd 76 
                 +++++ a+  Lv+l+++     +++aa +L++i+          +  a++ L +l+d+ ++
  KOO23056.1 436 DCASKGAIVPLVKLVSSGLHGAQQQAAATLAEIAlvsqnrdaiaNAGAIEPLIRLMDSSTV 496
                 5677788889999999999999999999999885333332222257799999999988765 PP

  == domain 6  score: -0.3 bits;  conditional E-value: 1.1
      HEAT_2  19 aairaLg.rignpea......lpaLvellededpavRraaaeaLgaigdpealpaLke 69 
                 +ai+ L  +i n+++      +  Lv l++  +p  ++ aa  L+++++  ++++L++
  KOO23056.1 702 RAIWHLCaDIENQKTivrcgtITELVMLVRAGSPKAQEVAAAGLSELARGGVAELLRQ 759
                 5555555556666444444447777778888888888888888888887777777776 PP

  == domain 7  score: 4.6 bits;  conditional E-value: 0.033
      HEAT_2  33 lpaLvellededpavRraaaeaLgaig...........dpealpaLkellddddddvvReaAaeaLa 88 
                  +  v+ll+++++  +r aa++L  +g           +  a++ L  ll+      v+e+Aa+aLa
  KOO23056.1 804 AKHAVSLLSNPSAGAQRRAAKTLQTLGarnlgspvlivNAGAISPLVNLLALG-ITAVKEEAASALA 869
                 66678888999999999999988766644444444444466889999888765.5666888888885 PP

  == domain 8  score: 0.5 bits;  conditional E-value: 0.65
      HEAT_2  27 ignpealpaLvellededpavRraaaeaLgai 58 
                 i++   ++ Lv+ll ++++a +++aa  L+ +
  KOO23056.1 964 IATAGGVRSLVPLLASSSAAAQAHAAACLSDL 995
                 44556677888888888888888888888755 PP

  == domain 9  score: 15.5 bits;  conditional E-value: 1.3e-05
      HEAT_2   13 dpevrraairaLg...........rignpealpaLvellededpavRraaaeaLgaigd 60  
                  + +++++a+ aL             i++  a++ Lv ll d+d + Rr aa a++aig 
  KOO23056.1 1025 HSNTKAEAAGALLalssgqpenqkAIADAGAIKPLVALLGDDDNYARRKAAGAIAAIGY 1083
                  44455555544444447766665456677889999999999999999999999999994 PP

  == domain 10  score: -0.0 bits;  conditional E-value: 0.91
      HEAT_2   44 dpavRraaaeaLg...........aigdpealpaLkellddddd.dvvReaAaeaL 87  
                  d +vR++aa aL+           ++++   ++ L +ll+ d++ ++ +e+Aa aL
  KOO23056.1 1156 DDEVRAEAAAALAvlarknakiqdKVASVGGIEPLVALLQGDHVsERAKEEAAAAL 1211
                  44566666666643333333211122233345666666666654345555555554 PP

  == domain 11  score: -2.1 bits;  conditional E-value: 4.2
      HEAT_2   17 rraairaLgrignp..ea......lpaLvelled 42  
                  +++ai  L+r ++    a      + +Lv+ll+ 
  KOO23056.1 1319 AARAISYLARAHPAnqAAiaaaggVGLLVSLLDA 1352
                  3333333333222122112222224455555544 PP

  == domain 12  score: -1.3 bits;  conditional E-value: 2.2
      HEAT_2   45 pavRraaaea 54  
                  p+vR+aa e+
  KOO23056.1 1485 PEVRKAAQET 1494
                  3344333332 PP

>> Arm_2  Armadillo-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.1       2.6   3.4e+03      46      81 ..      27      62 ..       9      77 .. 0.70
   2 ?    4.9   0.2     0.012        15      47      87 ..     134     174 ..     121     182 .. 0.84
   3 ?   -1.0   0.0      0.75   9.6e+02      28      70 ..     199     241 ..     184     283 .. 0.73
   4 ?   -2.8   0.0       2.8   3.5e+03      29      84 ..     457     512 ..     445     523 .. 0.72
   5 ?    4.3   0.0     0.018        23     139     171 ..     886     918 ..     857     929 .. 0.87
   6 ?    1.9   0.0       0.1   1.3e+02       7      81 ..    1005    1081 ..     996    1100 .. 0.75
   7 ?    0.0   0.0      0.38   4.8e+02      15      82 ..    1188    1257 ..    1176    1275 .. 0.76
   8 ?    0.4   0.0      0.28   3.5e+02      40      73 ..    1327    1360 ..    1312    1364 .. 0.83
   9 ?   -1.6   0.0       1.1   1.4e+03      37      72 ..    1450    1485 ..    1431    1495 .. 0.80

  Alignments for each domain:
  == domain 1  score: -2.8 bits;  conditional E-value: 2.6
       Arm_2 46 nqdiirdlggitiianllsksnaevkekalnalnnl 81
                n++ i d  gi+ + +ll +++ + ke+a  a+ +l
  KOO23056.1 27 NRKSIVDANGIVPLLELLDSTSMKAKENAAAAITQL 62
                555555665665566688889999999988887765 PP

  == domain 2  score: 4.9 bits;  conditional E-value: 0.012
       Arm_2  47 qdiirdlggitiianllsksnaevkekalnalnnlsenven 87 
                 q  + + ggi+ + ++l++s+ae++ +a  al nl+ n++ 
  KOO23056.1 134 QTAVAESGGIAPLVSMLNSSDAEMQANAAGALANLARNHQI 174
                 66788999999999**********************99874 PP

  == domain 3  score: -1.0 bits;  conditional E-value: 0.75
       Arm_2  28 liqeialltlgnsaaysvnqdiirdlggitiianllsksnaev 70 
                 +  e a+ + ++s   + n+d+i +lggi  +  ll + + ++
  KOO23056.1 199 TKDESAMAIWAISTDNAPNKDTIAKLGGIDPLIGLLQNGSSQK 241
                 556778888889999999*********9965555555544444 PP

  == domain 4  score: -2.8 bits;  conditional E-value: 2.8
       Arm_2  29 iqeialltlgnsaaysvnqdiirdlggitiianllsksnaevkekalnalnnlsen 84 
                  q++a  tl+  a  s n+d i + g i  +  l+ +s     e a  +l  l++ 
  KOO23056.1 457 AQQQAAATLAEIALVSQNRDAIANAGAIEPLIRLMDSSTVGSPETAARVLAHLAVE 512
                 57788889999999999999999999997777777777666666666666666555 PP

  == domain 5  score: 4.3 bits;  conditional E-value: 0.018
       Arm_2 139 llsLLskGnekikvqvLkvllnlseNpamtrel 171
                 +++LL +Gn +++ +v  +ll ls+ +++   +
  KOO23056.1 886 IITLLGTGNAETQEHVTGLLLTLSQDNDNRMAI 918
                 789*********************998886655 PP

  == domain 6  score: 1.9 bits;  conditional E-value: 0.1
       Arm_2    7 evLepkelekllalLk..ssedpliqeialltlgnsaaysvnqdiirdlggitiianllsksnaevkekalnalnnl 81  
                   +L  + ++ l++lL   +s+  +  e+a   l+ s   + nq+ i d g i  + +ll + ++  ++ka  a+ + 
  KOO23056.1 1005 AILAENGIQMLVTLLSnpLSHSNTKAEAAGALLALSSGQPENQKAIADAGAIKPLVALLGDDDNYARRKAAGAIAAI 1081
                  55777778888888863347777778888888888888999999999999998888899999988888887777654 PP

  == domain 7  score: 0.0 bits;  conditional E-value: 0.38
       Arm_2   15 ekllalLk..ssedpliqeialltlgnsaaysvnqdiirdlggitiianllsksnaevkekalnalnnls 82  
                  e l+alL+    ++ + +e+a    + ++ + +nq  + + ggi+ +a+++  ++ + +e+a  al +l+
  KOO23056.1 1188 EPLVALLQgdHVSERAKEEAAAALWSLAKQHYANQIKVAEAGGIAPLAAVIGLNSIRAQEQAAGALAALA 1257
                  55677776222345556677777778999999*******************9999999999988887765 PP

  == domain 8  score: 0.4 bits;  conditional E-value: 0.28
       Arm_2   40 saaysvnqdiirdlggitiianllsksnaevkek 73  
                  + a+++nq+ i   gg++++ +ll  ++  v ++
  KOO23056.1 1327 ARAHPANQAAIAAAGGVGLLVSLLDAEEGGVLKR 1360
                  679*****************99998877666655 PP

  == domain 9  score: -1.6 bits;  conditional E-value: 1.1
       Arm_2   37 lgnsaaysvnqdiirdlggitiianllsksnaevke 72  
                  l   aa+ +nq  i + ggi+ + nll    +ev++
  KOO23056.1 1450 LWSLAAHEANQVAIAESGGIVPLVNLLRAGGPEVQP 1485
                  556699************999999999887777764 PP

>> DUF913  Domain of Unknown Function (DUF913)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.0       1.8   2.3e+03     343     365 ..      27      49 ..      13      83 .. 0.77
   2 ?   10.6   0.0   0.00015      0.19     320     361 ..     319     360 ..     218     364 .. 0.89

  Alignments for each domain:
  == domain 1  score: -2.8 bits;  conditional E-value: 1.8
      DUF913 343 lcreFvekgGiellldlltlpsl 365
                 + ++ v+++Gi +ll+ll++ s+
  KOO23056.1  27 NRKSIVDANGIVPLLELLDSTSM 49 
                 55677788888888888887765 PP

  == domain 2  score: 10.6 bits;  conditional E-value: 0.00015
      DUF913 320 knslldyilnvakFLeallsnnslcreFvekgGiellldllt 361
                 +++++ + ++++  L+ +l+n++++++F +++Gi +l++l++
  KOO23056.1 319 STHITACAQAAMAVLSMILHNTTTQSQFARSDGIPPLINLVK 360
                 45699999*******************************986 PP

>> MtrA  Tetrahydromethanopterin S-methyltransferase, subunit A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.5   0.1    0.0047         6      86     127 ..      15      56 ..       7      94 .. 0.79
   2 ?   -0.1   0.0      0.47   6.1e+02      71     111 ..     889     926 ..     879     935 .. 0.69
   3 ?   -0.1   0.0      0.48   6.1e+02     100     133 ..    1072    1105 ..    1058    1110 .. 0.82

  Alignments for each domain:
  == domain 1  score: 6.5 bits;  conditional E-value: 0.0047
                 HHHHHHHHH-B-TTSBBTT--SSS-B-SSS-HHHHHHHHHH- CS
        MtrA  86 qalkalhenGvdkekkivgakGaiPfienlteeaverfqeqv 127
                  al +l ++  d+ k iv+a+G +P +e l++ +++  ++  
  KOO23056.1  15 AALAKLARESADNRKSIVDANGIVPLLELLDSTSMKAKENAA 56 
                 5788999999*99999**************999988666555 PP

  == domain 2  score: -0.1 bits;  conditional E-value: 0.47
                 EEEEEE---TTT-HHHHHHHHHHH-B-TTSB.BTT--SSS-B CS
        MtrA  71 flivtGaevkGhitGqalkalhenGvdkekk.ivgakGaiPf 111
                  l +  ae + h+tG  l+  +    d++++  ++  GaiP 
  KOO23056.1 889 LLGTGNAETQEHVTGLLLTLSQ----DNDNRmAISKAGAIPR 926
                 444556899*****97665433....455664788899**95 PP

  == domain 3  score: -0.1 bits;  conditional E-value: 0.48
                  SBBTT--SSS-B-SSS-HHHHHHHHHH-EEEEEE CS
        MtrA  100 kkivgakGaiPfienlteeaverfqeqvelvdli 133 
                  +k  ga  ai + +  +++av++f+   +l+ l+
  KOO23056.1 1072 RKAAGAIAAIGYRNTANQDAVDKFNGIEKLIALL 1105
                  46789999****************8766666665 PP

>> EF-hand_1  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   0.00022      0.28       8      23 ..    1278    1293 ..    1274    1295 .. 0.88

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00022
                  HHTTTSSSEEEHHHHH CS
   EF-hand_1    8 efDkDgdGkIdfeEfk 23  
                  ++D+DgdGk++  E+ 
  KOO23056.1 1278 VMDTDGDGKVSMAELA 1293
                  79***********995 PP

>> MMS19_N  Dos2-interacting transcription regulator of RNA-Pol-II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.2   0.0      0.46   5.9e+02     213     238 ..      40      65 ..      34      77 .. 0.86
   2 ?   -1.7   0.0       1.4   1.7e+03      20      71 ..     484     549 ..     468     570 .. 0.61
   3 ?    8.9   0.1   0.00078         1       1      70 [.     970    1042 ..     970    1074 .. 0.82

  Alignments for each domain:
  == domain 1  score: -0.2 bits;  conditional E-value: 0.46
     MMS19_N 213 llekLdstsvsakldaLqtlaacvea 238
                 lle Ldsts++ak+ a +++++ v++
  KOO23056.1  40 LLELLDSTSMKAKENAAAAITQLVRK 65 
                 799**************999998865 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 1.4
     MMS19_N  20 vslLaevlsrlpkkklseeevevLvqFfl..srledfavlkealkgllaLlrl.............k 71 
                 ++ L +++ +++    +e++++vL +  +  ++++d+ +l ++l g+++L+ +              
  KOO23056.1 484 IEPLIRLMDSSTV-GSPETAARVLAHLAVedDKIDDSGSLIHVLGGVSRLVAMldgslmitvsqstL 549
                 5555555555543.455666666666554227899***************97744444444443331 PP

  == domain 3  score: 8.9 bits;  conditional E-value: 0.00078
     MMS19_N    1 veaLgeyLtseddkvRakavslLaevlsrl..p.kkklseeevevLvqFflsrledfavlkealkgllaLlrl 70  
                  v++L + L s++ +  a+a  +L+++ + +  + +  l e+ +++Lv+ + + l+++++ +ea+ +llaL++ 
  KOO23056.1  970 VRSLVPLLASSSAAAQAHAAACLSDLCRTSlrNkNAILAENGIQMLVTLLSNPLSHSNTKAEAAGALLALSSG 1042
                  6788999******************9665533223489********************************953 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1544 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       814  (0.0454013); expected 358.6 (0.02)
Passed bias filter:                      446  (0.0248759); expected 358.6 (0.02)
Passed Vit filter:                        48  (0.00267723); expected 17.9 (0.001)
Passed Fwd filter:                        16  (0.000892409); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              14  [number of targets reported over threshold]
# CPU time: 1.06u 0.29s 00:00:01.35 Elapsed: 00:00:00.49
# Mc/sec: 9388.33
//
Query:       KOO23057.1  [L=488]
Description: gamma-butyrobetaine hydroxylase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.8e-15   56.8   0.0    4.3e-15   56.2   0.0    1.2  1  TauD      Taurine catabolism dioxygenase TauD, TfdA family
      4e-07   30.6   0.0    1.1e-06   29.2   0.0    1.8  2  DUF971    Protein of unknown function (DUF971)


Domain annotation for each model (and alignments):
>> TauD  Taurine catabolism dioxygenase TauD, TfdA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.2   0.0   4.7e-19   4.3e-15      25     266 ..     212     450 ..     196     452 .. 0.73

  Alignments for each domain:
  == domain 1  score: 56.2 bits;  conditional E-value: 4.7e-19
        TauD  25 elkeelrellaeygvvvfrg.fplspeqqlefarrf.GplygtpgrgtntkygevldvssvyesadianlayttllwHtDlsylesppgiqlLhcleap 121
                 ++ + l++++ +yg+v++ g  +   e +  fa    G+l++ p   t++k +   + +++ +++   + + + l+ HtD+s    p g+  L+ l + 
  KOO23057.1 212 ANLRMLQDVV-RYGAVIIDGcANPGVEGLHNFADKAlGGLQKDP---TRPKAHWKIV-KKDGATSVSYD-HLKRLNQHTDSS--IPPHGLPALCLLFHY 302
                 3467788886.9********556699999999876325555555...4444444444.44344444444.2444446*****..555555566666667 PP

        TauD 122 atG.GetpfvDgraaynaLpeelpellegltavrvyyhyrg..gglrteqelpavdkhprtghpvvrthpvltgrkallvn....ppfatrieglgtpe 213
                 a+G G +++ Dg+aa+ +L++e p  + +l a + y+  r+        +++ ++    +t+ p+ + ++   + k+++ n     p   ++  +  p+
  KOO23057.1 303 AEGtGTNTLTDGFAAAAQLRAENPLGY-ALLAKYGYDGERDfvASRADSTQQFNRGLVVSTQVPMLQLDDA-GELKRIQYNevfrMPLSLPY--DIFPR 397
                 7999**********************9.6667777777766556666677777777778888888888885.88888888854333777777..889** PP

        TauD 214 skelldaleelledpeftyrfqwqeGdlvifdNrrvlHgrtafdegeeRhllr 266
                  ++++d++ ell +++f  ++++ +G +++  N+rvlHgr    + ++R l++
  KOO23057.1 398 WYAAFDRFVELLHSNDFERQIPMSKGRFILMQNWRVLHGRAGGRASANRVLVG 450
                 ****************************************9554666888776 PP

>> DUF971  Protein of unknown function (DUF971)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.2   0.0   1.2e-10   1.1e-06       4      73 ..      35     112 ..      32     135 .. 0.90
   2 ?    2.4   0.0     0.027   2.5e+02       6      31 ..     101     138 ..     100     154 .. 0.81

  Alignments for each domain:
  == domain 1  score: 29.2 bits;  conditional E-value: 1.2e-10
      DUF971   4 skkgkrLeiewddgkesslpaelLRdacpcaecrkp..gqrllqsgk......ipkdvkiesiepvgnyalrlvfsDg 73 
                 +++gk+L i+++dg + ++++ +LRdac+    + +  g+rll++        ip  ++  ++e  + + lr++++ +
  KOO23057.1  35 ENEGKTLAIHFNDGLKCRFHSLWLRDACRDDAHVAKyaGERLLTATPvgpsgvIPSRLRASAAEVHDGEELRIHWDEE 112
                 6789*************************999884446999888777999999**********************986 PP

  == domain 2  score: 2.4 bits;  conditional E-value: 0.027
      DUF971   6 kgkrLeiewddgke............sslpaelLRdac 31 
                 +g++L+i+wd+++             s +pa++LR++ 
  KOO23057.1 101 DGEELRIHWDEESMckhelavdpptvSMFPAAFLRAYA 138
                 678999***98888888888888888999999999875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (488 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       334  (0.018629); expected 358.6 (0.02)
Passed bias filter:                      301  (0.0167884); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.49u 0.26s 00:00:00.75 Elapsed: 00:00:00.41
# Mc/sec: 3591.16
//
Query:       KOO23058.1  [L=75]
Description: hypothetical protein Ctob_007479, partial [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (75 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       288  (0.0160634); expected 358.6 (0.02)
Passed bias filter:                      188  (0.0104858); expected 358.6 (0.02)
Passed Vit filter:                        12  (0.000669307); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.22s 00:00:00.56 Elapsed: 00:00:00.39
# Mc/sec: 583.70
//
Query:       KOO23059.1  [L=432]
Description: arm repeat protein interacting with abf2-like protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.2e-49  163.2  31.0    2.3e-07   30.6   0.5   10.2 10  Arm              Armadillo/beta-catenin-like repeat
    1.1e-11   44.6   0.0    6.2e-06   26.2   0.0    5.0  6  Atx10homo_assoc  Spinocerebellar ataxia type 10 protein domai
    4.4e-06   26.7   0.3        1.2    9.0   0.0    3.3  3  DUF3361          Domain of unknown function (DUF3361)
    0.00019   20.2   0.2        0.3    9.6   0.2    3.4  2  Adaptin_N        Adaptin N terminal region
    0.00086   19.6  36.6       0.64   10.4   3.1    6.3  6  HEAT_2           HEAT repeats
     0.0021   18.1   0.1       0.71    9.9   0.0    3.1  3  Cnd1             non-SMC mitotic condensation complex subunit
  ------ inclusion threshold ------
      0.034   13.3   1.1        1.9    7.6   0.0    2.8  3  Tubulin_2        Tubulin like
      0.039   13.4   0.2       0.68    9.3   0.1    2.8  2  RYDR_ITPR        RIH domain
       0.32   11.4   6.6       0.45   10.9   0.2    3.8  4  DUF1840          Domain of unknown function (DUF1840)
       0.55    9.5   7.1        1.7    7.9   0.1    3.3  3  BAF250_C         SWI/SNF-like complex subunit BAF250/Osa
        3.1    8.4  47.6        2.1    9.0   2.4    7.9  8  HEAT_EZ          HEAT-like repeat
        9.7    5.6  16.1       0.31   10.5   0.6    3.0  3  Questin_oxidase  Questin oxidase-like


Domain annotation for each model (and alignments):
>> Arm  Armadillo/beta-catenin-like repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.3   0.1    0.0016       2.4      17      40 ..      26      50 ..      23      51 .. 0.81
   2 !   22.2   0.2   6.8e-08    0.0001       2      37 ..      55      91 ..      54      95 .. 0.92
   3 !   18.2   0.0   1.2e-06    0.0019       2      41 .]      98     137 ..      97     137 .. 0.91
   4 !   19.9   0.1   3.7e-07   0.00055       8      41 .]     147     180 ..     142     180 .. 0.90
   5 !   19.1   0.3   6.7e-07     0.001       6      37 ..     187     217 ..     182     221 .. 0.85
   6 !   30.6   0.5   1.5e-10   2.3e-07       1      40 [.     223     262 ..     223     263 .. 0.94
   7 !    6.3   0.0    0.0072        11       1      20 [.     265     284 ..     265     293 .. 0.87
   8 !   26.2   0.0   3.9e-09   5.8e-06       1      41 []     308     352 ..     308     352 .. 0.95
   9 !   12.6   0.3   7.5e-05      0.11      10      40 ..     364     395 ..     354     396 .. 0.85
  10 !   15.3   0.0     1e-05     0.016       5      32 ..     401     428 ..     397     430 .. 0.83

  Alignments for each domain:
  == domain 1  score: 8.3 bits;  conditional E-value: 0.0016
                HHHHTT.TSSHHHHHHHHHHHHHHT CS
         Arm 17 LvrLLs.sedeevqeeAawALsNLa 40
                L++  s s+  e+qe+Aa+AL+ La
  KOO23059.1 26 LIKNVSdSTGSELQEDAATALRSLA 50
                45555578899***********997 PP

  == domain 2  score: 22.2 bits;  conditional E-value: 6.8e-08
                HHHHHHHHHTTHHHHHHHHTT.TSSHHHHHHHHHHHH CS
         Arm  2 senkdavieaGavppLvrLLs.sedeevqeeAawALs 37
                 e+ da+  aGav+pL++LL+ s + + q  Aa+AL+
  KOO23059.1 55 HEHVDAIFAAGAVRPLIALLRtSASANAQASAAGALA 91
                5789********************************7 PP

  == domain 3  score: 18.2 bits;  conditional E-value: 1.2e-06
                 HHHHHHHHHTTHHHHHHHHTTTSSHHHHHHHHHHHHHHTT CS
         Arm   2 senkdavieaGavppLvrLLssedeevqeeAawALsNLaa 41 
                 +e+  a++  Ga+ pLvr Ls + ++ qeeAa+AL+ L++
  KOO23059.1  98 PEHQAAIVAGGAIAPLVRILSAGGTKAQEEAASALASLTS 137
                 6778888888**************************9985 PP

  == domain 4  score: 19.9 bits;  conditional E-value: 3.7e-07
                 HHHTTHHHHHHHHTTTSSHHHHHHHHHHHHHHTT CS
         Arm   8 vieaGavppLvrLLssedeevqeeAawALsNLaa 41 
                 v ++Gav pLv LL  ++  +q  Aa AL+N+a+
  KOO23059.1 147 VMRQGAVHPLVVLLAGGSAATQAYAAQALANMAR 180
                 556*****************************97 PP

  == domain 5  score: 19.1 bits;  conditional E-value: 6.7e-07
                 HHHH.HTTHHHHHHHHTTTSSHHHHHHHHHHHH CS
         Arm   6 davi.eaGavppLvrLLssedeevqeeAawALs 37 
                 ++v+ +aGa+ppL+rLLs  d + q++Aa++L+
  KOO23059.1 187 QTVVaKAGAIPPLLRLLS--DARAQTPAAGCLA 217
                 45555*************..9999999999995 PP

  == domain 6  score: 30.6 bits;  conditional E-value: 1.5e-10
                 SHHHHHHHHHTTHHHHHHHHTTTSSHHHHHHHHHHHHHHT CS
         Arm   1 nsenkdavieaGavppLvrLLssedeevqeeAawALsNLa 40 
                 ns+  ++v +aG++ppL++LL+  + e q +Aa+ALs La
  KOO23059.1 223 NSGVQQQVASAGGIPPLLALLNGRNIEAQVQAAAALSELA 262
                 577889********************************98 PP

  == domain 7  score: 6.3 bits;  conditional E-value: 0.0072
                 SHHHHHHHHHTTHHHHHHHH CS
         Arm   1 nsenkdavieaGavppLvrL 20 
                 n++   ++++aG++ pL++L
  KOO23059.1 265 NPDIQAQIVRAGGIGPLLAL 284
                 567778999*********98 PP

  == domain 8  score: 26.2 bits;  conditional E-value: 3.9e-09
                 SHHHHHHHHHTTHHHHHHHHTT....TSSHHHHHHHHHHHHHHTT CS
         Arm   1 nsenkdavieaGavppLvrLLs....sedeevqeeAawALsNLaa 41 
                 n+ n da+ ++G++++Lv+ L     sed++v+ +Aa+AL  L++
  KOO23059.1 308 NPSNQDAIARQGGIKALVDNLGsphgSEDPRVLANAATALMELCR 352
                 6789************************************88886 PP

  == domain 9  score: 12.6 bits;  conditional E-value: 7.5e-05
                 HTTHHHHHHHHTT.TSSHHHHHHHHHHHHHHT CS
         Arm  10 eaGavppLvrLLs.sedeevqeeAawALsNLa 40 
                 +  a+  L +L + s++ +v+ e+a+AL+ L+
  KOO23059.1 364 HTEAISLLASLVKsSMHMSVKAECAGALWSLS 395
                 5568999**********************997 PP

  == domain 10  score: 15.3 bits;  conditional E-value: 1e-05
                 HHHHHHTTHHHHHHHHTTTSSHHHHHHH CS
         Arm   5 kdavieaGavppLvrLLssedeevqeeA 32 
                 k ++ +a a+ppLv+LLss+d++ +e+A
  KOO23059.1 401 KTMIARAFAIPPLVALLSSTDQRACEQA 428
                 555667779****************998 PP

>> Atx10homo_assoc  Spinocerebellar ataxia type 10 protein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.0       1.7   2.6e+03      38      61 ..      31      54 ..      15      59 .. 0.78
   2 ?    0.1   0.0      0.57   8.5e+02       9      32 ..      90     113 ..      84     133 .. 0.86
   3 ?   -2.0   0.0       2.5   3.7e+03      14      33 ..     181     200 ..     167     203 .. 0.55
   4 !    9.0   0.0   0.00091       1.4       9      65 ..     216     270 ..     212     274 .. 0.75
   5 ?    2.5   0.0       0.1   1.5e+02       8      33 ..     257     282 ..     250     285 .. 0.88
   6 !   26.2   0.0   4.1e-09   6.2e-06       8      71 ..     300     365 ..     297     391 .. 0.84

  Alignments for each domain:
  == domain 1  score: -1.5 bits;  conditional E-value: 1.7
  Atx10homo_assoc 38 iDdnnPfirewailairnLlegne 61
                      D+    ++e a  a+r L ++++
       KOO23059.1 31 SDSTGSELQEDAATALRSLAQQSH 54
                     566666789999999999998875 PP

  == domain 2  score: 0.1 bits;  conditional E-value: 0.57
  Atx10homo_assoc   9 lgnlvyknkevqdkvreldgleli 32 
                      l+ l+++++e q  +++ ++++ +
       KOO23059.1  90 LAALAHEKPEHQAAIVAGGAIAPL 113
                      8999*********99998888765 PP

  == domain 3  score: -2.0 bits;  conditional E-value: 2.5
  Atx10homo_assoc  14 yknkevqdkvreldgleliL 33 
                        n ++q  v + ++++ +L
       KOO23059.1 181 CTNADAQTVVAKAGAIPPLL 200
                      34555566666666666555 PP

  == domain 4  score: 9.0 bits;  conditional E-value: 0.00091
  Atx10homo_assoc   9 lgnlvyknkevqdkvreldgleliLsqcniDdnnPfirewailairnLlegneenqe 65 
                      l++lv +n+ vq++v + +g++ +L   n    n   + +a  a+  L ++n++ q+
       KOO23059.1 216 LAMLVSNNSGVQQQVASAGGIPPLLALLNGR--NIEAQVQAAAALSELAKENPDIQA 270
                      899*********************9876654..333444566666677777766665 PP

  == domain 5  score: 2.5 bits;  conditional E-value: 0.1
  Atx10homo_assoc   8 llgnlvyknkevqdkvreldgleliL 33 
                       l+ l+ +n+++q ++++ +g+  +L
       KOO23059.1 257 ALSELAKENPDIQAQIVRAGGIGPLL 282
                      6899999***************9988 PP

  == domain 6  score: 26.2 bits;  conditional E-value: 4.1e-09
  Atx10homo_assoc   8 llgnlvyknkevqdkvreldgleliLsq..cniDdnnPfirewailairnLlegneenqelvaeLe 71 
                       l+ l+++n+++qd + +++g++++ ++      +++P +   a  a+  L+ +n++nq+ va+ +
       KOO23059.1 300 ALARLAHQNPSNQDAIARQGGIKALVDNlgSPHGSEDPRVLANAATALMELCRSNHANQAAVANHT 365
                      5899************************44457899**************************9854 PP

>> DUF3361  Domain of unknown function (DUF3361)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.4   0.1    0.0013         2      53     132 ..      21     101 ..      10     117 .. 0.86
   2 ?    5.5   0.0      0.01        15      68     130 ..     205     267 ..     198     275 .. 0.86
   3 !    9.0   0.0   0.00082       1.2       9     115 ..     318     426 ..     312     429 .. 0.81

  Alignments for each domain:
  == domain 1  score: 8.4 bits;  conditional E-value: 0.0013
     DUF3361  53 eFikkiasivnksaadasilqrslaiLesivlnssel.yelvekevtlesLiehLqssnqe.iqtnalaLlnALllkaddsk 132
                 +Fi++ +++v+ s + +++++ +   L s+++ s+++ ++ +  +  +  Li+ L++s +   q +a   l AL  + ++++
  KOO23059.1  21 AFIAELIKNVSDS-TGSELQEDAATALRSLAQQSHHEhVDAIFAAGAVRPLIALLRTSASAnAQASAAGALAALAHEKPEHQ 101
                 6999999999999.889***************99966599***************877776588888888999887777554 PP

  == domain 2  score: 5.5 bits;  conditional E-value: 0.01
     DUF3361  68 dasilqrslaiLesivlnsselyelvekevtlesLiehLqssnqeiqtnalaLlnALllkadd 130
                 da+ + ++   L  +v n+s   ++v+++  ++ L++ L+  n e q +a a l  L ++ +d
  KOO23059.1 205 DARAQTPAAGCLAMLVSNNSGVQQQVASAGGIPPLLALLNGRNIEAQVQAAAALSELAKENPD 267
                 6777888999999********************************999999988877766655 PP

  == domain 3  score: 9.0 bits;  conditional E-value: 0.00082
     DUF3361   9 rdGlkllvkivee..gkesgeilayaLtafleLm..dhgivsWdtlsdeFikkiasivnksaadasilqrslaiLesivlnsselyelvekevtlesLi 103
                 ++G+k lv+ + +  g+e+ ++la+a ta++eL   +h +      ++e i+  as v++s +  s+  ++   L s+ +  +   ++++++  ++ L+
  KOO23059.1 318 QGGIKALVDNLGSphGSEDPRVLANAATALMELCrsNHANQAAVANHTEAISLLASLVKSS-MHMSVKAECAGALWSLSQDPK-IKTMIARAFAIPPLV 414
                 568999999987644688999************8224555555566788999999999999.99***********99866655.8999*********** PP

     DUF3361 104 ehLqssnqeiqt 115
                 + L+s++q+ + 
  KOO23059.1 415 ALLSSTDQRACE 426
                 *****9998655 PP

>> Adaptin_N  Adaptin N terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.1   0.0    0.0023       3.5     331     417 ..      13     106 ..       8     137 .. 0.78
   2 !    9.6   0.2    0.0002       0.3     154     281 ..     236     422 ..     195     424 .. 0.60

  Alignments for each domain:
  == domain 1  score: 6.1 bits;  conditional E-value: 0.0023
                 CXXTTTHHHHHHHHHHHTTSSXXHHHHHHHHHHHHHHHHHS......CCHHHHHHHHHHHHHTTXX.HHHHHHHHHHHHHHHHHSTTTSTTCHH CS
   Adaptin_N 331 lvdesNvkeivkeLkkyvkevadedfksklvkaIgrlaekf......atdaewvldvllellslsg.esvkdeivevirdliqkvpelheeiie 417
                 +++ s++ + + eL k v+++   ++ +++++a+++la+++      a  a+  +  l+ ll++s    ++++++ ++  l +++pe ++ i++
  KOO23059.1  13 IAQYSSLGAFIAELIKNVSDSTGSELQEDAATALRSLAQQShhehvdAIFAAGAVRPLIALLRTSAsANAQASAAGALAALAHEKPEHQAAIVA 106
                 5667888888999999998887888****************98887777788899999999998551555999999999999999999999853 PP

  == domain 2  score: 9.6 bits;  conditional E-value: 0.0002
                 HHHHHHCTT-SSHHHHHHHHHHHHHH.HCCCCCCCHHHHHHHCCHHHHHHCS-HHHHHHHHHH....HCC---SSHHHH.................... CS
   Adaptin_N 154 veeikellsdkdpgvvlaAvalleei.kkndrlllkllpklvrrLcnllteldpwlqvkiikl....ltrlarqepeer.................... 227
                 ++ +  ll+ +++  ++ A a+l e+ k n+++ +++++     +  ll  + ++  +    l    l rla+q+p+ +                    
  KOO23059.1 236 IPPLLALLNGRNIEAQVQAAAALSELaKENPDIQAQIVRAG--GIGPLLALSGSFRSTAAMALgtaaLARLAHQNPSNQdaiarqggikalvdnlgsph 332
                 55566666666666666666666666555555544333322..22233333333333332222111133455555544455555555555555555555 PP

                 ................................HHHHHHHCGGCG.CSSCHHHHHHHHHCCHCCCCST.....HHHCCHHCHHHHHHSSCC CS
   Adaptin_N 228 ..............................skkellesllnllq.ssnnaVlletvnlivelapkne.....livlavnaLvrllsskde 281
                                               ++ e +  l +l++ s +++V  e++ ++ +l+++++     ++  a+  Lv llss d+
  KOO23059.1 333 gsedprvlanaatalmelcrsnhanqaavaNHTEAISLLASLVKsSMHMSVKAECAGALWSLSQDPKiktmiARAFAIPPLVALLSSTDQ 422
                 5555555555555555555555544444433378888888888888899***********99999999999888899999****999987 PP

>> HEAT_2  HEAT repeats
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.7   3.5   0.00074       1.1      14      61 ..      39      96 ..      23     104 .. 0.76
   2 !    6.8   9.2    0.0059       8.9       2      72 ..      68     161 ..      66     176 .. 0.71
   3 ?    3.2   5.3     0.077   1.1e+02       3      74 ..     112     206 ..     110     210 .. 0.63
   4 ?    4.4   6.0     0.034        51       7      85 ..     159     258 ..     152     259 .. 0.72
   5 !   10.4   3.1   0.00043      0.64      17      76 ..     289     380 ..     283     391 .. 0.64
   6 ?    3.5   0.1     0.064        96       4      51 ..     371     428 ..     368     431 .. 0.63

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 0.00074
      HEAT_2 14 pevrraairaLgri.gnp........ealpaLvell.ededpavRraaaeaLgaigdp 61
                +e +++a+r+L+++ +++         a++ L+ ll ++++++ ++ aa aL+a++++
  KOO23059.1 39 QEDAATALRSLAQQsHHEhvdaifaaGAVRPLIALLrTSASANAQASAAGALAALAHE 96
                5677888888985515557877777777********77899************99864 PP

  == domain 2  score: 6.8 bits;  conditional E-value: 0.0059
      HEAT_2   2 daLlqalendpdpevrraairaLgrignp...........ealpaLvellededpavRraaaeaLgaig............dpealpaLkelld 72 
                  +L+++l+++++ + ++ a+ aL+ ++++            a++ Lv++l+   +  +++aa aL+ +             ++ a+  L  ll+
  KOO23059.1  68 RPLIALLRTSASANAQASAAGALAALAHEkpehqaaivagGAIAPLVRILSAGGTKAQEEAASALASLTsdslveaqrdvmRQGAVHPLVVLLA 161
                 68**********************988886777777777777***********************98861122111121223445555555555 PP

  == domain 3  score: 3.2 bits;  conditional E-value: 0.077
      HEAT_2   3 aLlqalendpdpevrraairaLgrignp............ealpaLvellededpavRraaaeaLgaig............dpealpaLkellddd 74 
                 +L+ +l +   ++ + +a+ aL+++ ++             a+  Lv ll   ++a+++ aa+aL+ ++               a+p L++ll d 
  KOO23059.1 112 PLVRIL-SAGGTKAQEEAASALASLTSDslveaqrdvmrqGAVHPLVVLLAGGSAATQAYAAQALANMArctnadaqtvvaKAGAIPPLLRLLSDA 206
                 666667.66666777788888884444323333444444477999999999999999999999999885333332222222355888888888765 PP

  == domain 4  score: 4.4 bits;  conditional E-value: 0.034
      HEAT_2   7 alendpdpevrraairaLg...rignp.........ealpaLvellededpavRraaaeaL......g...aigdpealpaLkelldddd.ddvvReaA 83 
                 +l    + ++++ a++aL+   r+ n           a+p L++ll+d+ + + +a + a+      g   ++++   +p L++ll+  + ++ v++aA
  KOO23059.1 159 LL-AGGSAATQAYAAQALAnmaRCTNAdaqtvvakaGAIPPLLRLLSDARAQTPAAGCLAMlvsnnsGvqqQVASAGGIPPLLALLNGRNiEAQVQAAA 256
                 55.67788899999999995553333344555555566*********9999999999999866655414447778889999999999998448888888 PP

      HEAT_2  84 ae 85 
                 a 
  KOO23059.1 257 AL 258
                 75 PP

  == domain 5  score: 10.4 bits;  conditional E-value: 0.00043
      HEAT_2  17 rraairaLg.....rignp...........ealpaLvell....ededpavRraaaeaLgai............gdpealpaLkellddddd 76 
                 r +a++aLg     r++++             ++aLv+ l     +edp+v ++aa+aL ++             + ea+++L+ l+++  +
  KOO23059.1 289 RSTAAMALGtaalaRLAHQnpsnqdaiarqGGIKALVDNLgsphGSEDPRVLANAATALMELcrsnhanqaavaNHTEAISLLASLVKSSMH 380
                 788888888888884444433444443333669999999965444599***********988544443333222245577777777666555 PP

  == domain 6  score: 3.5 bits;  conditional E-value: 0.064
      HEAT_2   4 LlqalendpdpevrraairaLg.rignpea.........lpaLvellededpavRraa 51 
                 L ++++++ +  v+++ + aL    ++p++         +p Lv ll+++d +  ++a
  KOO23059.1 371 LASLVKSSMHMSVKAECAGALWsLSQDPKIktmiarafaIPPLVALLSSTDQRACEQA 428
                 4445555667777777777777423455333344444559999999999988776655 PP

>> Cnd1  non-SMC mitotic condensation complex subunit 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.0       2.2   3.3e+03      59      90 ..      22      54 ..      13     103 .. 0.72
   2 ?    4.2   0.0     0.026        39      24      96 ..     197     272 ..     193     276 .. 0.78
   3 !    9.9   0.0   0.00048      0.71      50     106 ..     311     373 ..     287     404 .. 0.74

  Alignments for each domain:
  == domain 1  score: -2.0 bits;  conditional E-value: 2.2
        Cnd1 59 flselaklleDen.prVvanalaalteisekse 90
                f++el k ++D+  ++ ++ a +al  ++++s 
  KOO23059.1 22 FIAELIKNVSDSTgSELQEDAATALRSLAQQSH 54
                666777777666556666677777776666643 PP

  == domain 2  score: 4.2 bits;  conditional E-value: 0.026
        Cnd1  24 epLrkrLkDedpyVRktaaivvakLilnd.....mvkekgflselaklleDenprVvanalaalteiseksenaiynl 96 
                 +pL + L+D  +  +  aa ++a L++n+      v + g +  l+ ll+  n + +  a aal+e++++++++  ++
  KOO23059.1 197 PPLLRLLSDARA--QTPAAGCLAMLVSNNsgvqqQVASAGGIPPLLALLNGRNIEAQVQAAAALSELAKENPDIQAQI 272
                 566666766655..577999999995554333336888999****************************998876665 PP

  == domain 3  score: 9.9 bits;  conditional E-value: 0.00048
        Cnd1  50 lndmvkekgflselakll....eDenprVvanalaalteisek..senaiynllpdiisklsd 106
                 ++d +  +g ++ l + l      e+prV ana +al+e+ +   +++a++ +  + is l +
  KOO23059.1 311 NQDAIARQGGIKALVDNLgsphGSEDPRVLANAATALMELCRSnhANQAAVANHTEAISLLAS 373
                 56666666666666666644435689**************99976667888888999998875 PP

>> Tubulin_2  Tubulin like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.1   0.1      0.03        45     168     233 ..      34     100 ..      33     111 .. 0.81
   2 ?   -0.7   0.0      0.43   6.4e+02     259     288 ..     218     251 ..     143     277 .. 0.62
   3 ?    7.6   0.0    0.0012       1.9     206     239 ..     332     361 ..     298     405 .. 0.78

  Alignments for each domain:
  == domain 1  score: 3.1 bits;  conditional E-value: 0.03
   Tubulin_2 168 TGSGiflDvayllrkilkeekq...kvkiiglvllPdvfplnkeggervkaNayaaLkELnalkdsdee 233
                 TGS +  D a  lr + +++++   ++ + + ++ P +  l +++  +++a a+ aL+ L++   ++e+
  KOO23059.1  34 TGSELQEDAATALRSLAQQSHHehvDAIFAAGAVRPLIALLRTSASANAQASAAGALAALAH--EKPEH 100
                 8888999**************986644466677777777999999****************9..33333 PP

  == domain 2  score: -0.7 bits;  conditional E-value: 0.43
   Tubulin_2 259 yLvsnkneegkeilersklmelva....dnifls 288
                 +Lvsn+++ ++++ +++ ++ l+a    +ni ++
  KOO23059.1 218 MLVSNNSGVQQQVASAGGIPPLLAllngRNIEAQ 251
                 4555555555555554444444443333333333 PP

  == domain 3  score: 7.6 bits;  conditional E-value: 0.0012
   Tubulin_2 206 nkeggervkaNayaaLkELnalkdsdeetelevk 239
                   ++  rv aNa+ aL+EL +    +++  +++ 
  KOO23059.1 332 HGSEDPRVLANAATALMELCR----SNHANQAAV 361
                 5577899*************9....333333333 PP

>> RYDR_ITPR  RIH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.0       2.2   3.2e+03      63      98 ..      41      77 ..      23      96 .. 0.49
   2 ?    9.3   0.1   0.00046      0.68      81     110 ..     337     369 ..     121     407 .. 0.87

  Alignments for each domain:
  == domain 1  score: -2.7 bits;  conditional E-value: 2.2
   RYDR_ITPR 63 gaaesttselseekaaeykeivvl.cyrlLayfcrds 98
                +aa+   s ++++ ++++++i+++   r L ++ r+s
  KOO23059.1 41 DAATALRSLAQQSHHEHVDAIFAAgAVRPLIALLRTS 77
                3333333444444445555555543455555555555 PP

  == domain 2  score: 9.3 bits;  conditional E-value: 0.00046
   RYDR_ITPR  81 keivvlcyrlLayfcrdsrkNqeaiakh...ls 110
                  +++++  + L  +cr+++ Nq+a+a+h   +s
  KOO23059.1 337 PRVLANAATALMELCRSNHANQAAVANHteaIS 369
                 367778888999999*********999944333 PP

>> DUF1840  Domain of unknown function (DUF1840)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.2    0.0003      0.45      31     104 ..       8      82 ..       1      86 [. 0.77
   2 ?   -0.7   0.0       1.2   1.7e+03      54      64 ..     118     128 ..      83     171 .. 0.51
   3 ?    0.2   0.2      0.64   9.5e+02      75     101 ..     182     208 ..     115     212 .. 0.63
   4 ?    0.8   0.1       0.4     6e+02      73     106 ..     328     361 ..     287     385 .. 0.71

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.0003
     DUF1840  31 lterGaitaedlpaaiakLeaaiaaekaeeaeeeeeeeeeek.eeekeeeeeevsLaqRalPLlelLkaaakege 104
                 +t++ + + + l a ia+L + +++++ +e +e++ ++ ++  +++++e+ +++  a  + PL+ lL+ +a +++
  KOO23059.1   8 ITAKDIAQYSSLGAFIAELIKNVSDSTGSELQEDAATALRSLaQQSHHEHVDAIFAAGAVRPLIALLRTSASANA 82 
                 56677777788899999**999999999887777666555443667777777777788889*********99987 PP

  == domain 2  score: -0.7 bits;  conditional E-value: 1.2
     DUF1840  54 aaekaeeaeee 64 
                 +a  ++++ee+
  KOO23059.1 118 SAGGTKAQEEA 128
                 33322333332 PP

  == domain 3  score: 0.2 bits;  conditional E-value: 0.64
     DUF1840  75 ekeeeeeevsLaqRalPLlelLkaaak 101
                 ++++++  v+ a  + PLl lL++a++
  KOO23059.1 182 TNADAQTVVAKAGAIPPLLRLLSDARA 208
                 333344444444445578888887776 PP

  == domain 4  score: 0.8 bits;  conditional E-value: 0.4
     DUF1840  73 eeekeeeeeevsLaqRalPLlelLkaaakegedV 106
                   + +  e++  La+ a  L+el ++ +++++ V
  KOO23059.1 328 LGSPHGSEDPRVLANAATALMELCRSNHANQAAV 361
                 4456667777778899999999999988888877 PP

>> BAF250_C  SWI/SNF-like complex subunit BAF250/Osa
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.5   0.2     0.098   1.5e+02     165     246 ..      16      98 ..      11     104 .. 0.78
   2 ?    2.2   0.2     0.063        93     176     213 ..     137     174 ..     116     213 .. 0.59
   3 ?    7.9   0.1    0.0011       1.7     184     243 ..     336     395 ..     291     403 .. 0.77

  Alignments for each domain:
  == domain 1  score: 1.5 bits;  conditional E-value: 0.098
    BAF250_C 165 fsrleklvdvLvrllaeredqvlrElavvlLsalaqadeavaraialqkssislLisFiedaeakaravaeqhglqalr.dnp 246
                 +s+l  +++ L + ++++  + l+E a + L +laq +++       +  ++  Li+ + +++++  + + +  l+al  ++p
  KOO23059.1  16 YSSLGAFIAELIKNVSDSTGSELQEDAATALRSLAQQSHHEHVDAIFAAGAVRPLIALLRTSASANAQASAAGALAALAhEKP 98 
                 56677788899999999999999999*********999887777778889999999999887776666666666666652444 PP

  == domain 2  score: 2.2 bits;  conditional E-value: 0.063
    BAF250_C 176 vrllaeredqvlrElavvlLsalaqadeavaraialqk 213
                 +  l e +  v+r  av  L  l ++ +a+++a a q 
  KOO23059.1 137 SDSLVEAQRDVMRQGAVHPLVVLLAGGSAATQAYAAQA 174
                 45566666666666666666666665555555444432 PP

  == domain 3  score: 7.9 bits;  conditional E-value: 0.0011
    BAF250_C 184 dqvlrElavvlLsalaqadeavaraialqkssislLisFiedaeakaravaeqhglqalr 243
                 d+ +   a + L +l+++++a   a+a ++++islL s + ++ ++  +   +  l  l+
  KOO23059.1 336 DPRVLANAATALMELCRSNHANQAAVANHTEAISLLASLVKSSMHMSVKAECAGALWSLS 395
                 33333445567789**************************99988776665555555555 PP

>> HEAT_EZ  HEAT-like repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.3   4.1    0.0097        15       3      55 .]      38      93 ..      36      93 .. 0.71
   2 ?    9.0   2.4    0.0014       2.1       4      55 .]     125     178 ..     122     178 .. 0.76
   3 ?    5.0   3.9     0.024        36       3      53 ..     167     217 ..     165     219 .. 0.82
   4 ?    7.1   2.4    0.0053       7.9       7      55 .]     212     261 ..     206     261 .. 0.83
   5 ?    6.0   0.1     0.012        18       4      26 ..     251     273 ..     246     275 .. 0.86
   6 ?    3.3   3.5     0.079   1.2e+02       4      52 ..     289     347 ..     287     350 .. 0.75
   7 ?    4.9   0.8     0.025        37       1      52 [.     337     391 ..     337     396 .. 0.69
   8 ?    2.4   0.1      0.16   2.4e+02      27      43 ..     407     423 ..     388     429 .. 0.66

  Alignments for each domain:
  == domain 1  score: 6.3 bits;  conditional E-value: 0.0097
     HEAT_EZ  3 vRraAawaLGrla.ggepel.lqp.lvpeilpaLlalLnddsd.eVRaaAagaLgnl 55
                +++ Aa aL +la +   e+ +   +   ++++L+alL+++ + + +a AagaL++l
  KOO23059.1 38 LQEDAATALRSLAqQSHHEHvD-AiFAAGAVRPLIALLRTSASaNAQASAAGALAAL 93
                7888888886544033333333.2589999********665555**********976 PP

  == domain 2  score: 9.0 bits;  conditional E-value: 0.0014
     HEAT_EZ   4 RraAawaLGr......laggepellqplvpeilpaLlalLnddsdeVRaaAagaLgnl 55 
                 ++ Aa+aL++      ++++ ++ ++   + ++ +L+ lL   s++++a+Aa aL+n+
  KOO23059.1 125 QEEAASALASltsdslVEAQ-RDVMR---QGAVHPLVVLLAGGSAATQAYAAQALANM 178
                 7899****999999844444.44444...577777777777777799********997 PP

  == domain 3  score: 5.0 bits;  conditional E-value: 0.024
     HEAT_EZ   3 vRraAawaLGrlaggepellqp..lvpeilpaLlalLnddsdeVRaaAagaLg 53 
                  ++ Aa aL+++a +   + q+  +   ++p+Ll+lL  ++++ ++ Aag+L+
  KOO23059.1 167 TQAYAAQALANMARCTNADAQTvvAKAGAIPPLLRLL--SDARAQTPAAGCLA 217
                 57789******997777778888889999********..88888888887775 PP

  == domain 4  score: 7.1 bits;  conditional E-value: 0.0053
     HEAT_EZ   7 AawaLGrlaggepellqp.lvpeilpaLlalLnddsdeVRaaAagaLgnl 55 
                 Aa +L+ l ++++  +q+ +    +p+LlalLn  + e + +Aa aL+ l
  KOO23059.1 212 AAGCLAMLVSNNSGVQQQvASAGGIPPLLALLNGRNIEAQVQAAAALSEL 261
                 677787766677777666699999***********************976 PP

  == domain 5  score: 6.0 bits;  conditional E-value: 0.012
     HEAT_EZ   4 RraAawaLGrlaggepellqplv 26 
                 +  Aa+aL++la ++p+ +++ v
  KOO23059.1 251 QVQAAAALSELAKENPDIQAQIV 273
                 5689****99********99665 PP

  == domain 6  score: 3.3 bits;  conditional E-value: 0.079
     HEAT_EZ   4 RraAawaLGr.....laggepellqp.lvpeilpaLlalLnd....dsdeVRaaAagaL 52 
                 R  Aa+aLG+     la ++p  +   + +  ++aL+  L +    ++++V a+Aa aL
  KOO23059.1 289 RSTAAMALGTaalarLAHQNPSNQDAiARQGGIKALVDNLGSphgsEDPRVLANAATAL 347
                 55689999998888888888888666688888888887777777734448888888887 PP

  == domain 7  score: 4.9 bits;  conditional E-value: 0.025
     HEAT_EZ   1 wrvRraAawaLGrlaggepellqp....lvpeilpaLlalLnddsd.eVRaaAagaL 52 
                 +rv ++Aa aL++l+  ++++ ++    +++e++ +L++l +++   +V+a +agaL
  KOO23059.1 337 PRVLANAATALMELC--RSNHANQaavaNHTEAISLLASLVKSSMHmSVKAECAGAL 391
                 6899999****9844..4444333334578888888888876665578877777776 PP

  == domain 8  score: 2.4 bits;  conditional E-value: 0.16
     HEAT_EZ  27 peilpaLlalLnddsde 43 
                   ++p+L+alL++ +++
  KOO23059.1 407 AFAIPPLVALLSSTDQR 423
                 5689*******887765 PP

>> Questin_oxidase  Questin oxidase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.4   4.0      0.13   1.9e+02      89     144 ..      56     119 ..      22     150 .. 0.65
   2 ?   10.5   0.6   0.00021      0.31      97     138 ..     150     192 ..     144     271 .. 0.75
   3 ?    1.6   0.2      0.11   1.7e+02     113     160 ..     287     373 ..     281     420 .. 0.54

  Alignments for each domain:
  == domain 1  score: 1.4 bits;  conditional E-value: 0.13
  Questin_oxidase  89 eellsrlfggllHPlIhl.GyglefgqpalvaegLAqaavhydsdpse.llsaeaas...........s 144
                      e++ + +++g++ PlI l   ++ ++ +a +a +LA +a ++ +++++   +                +
       KOO23059.1  56 EHVDAIFAAGAVRPLIALlRTSASANAQASAAGALAALAHEK-PEHQAaIVA----GgaiaplvrilsA 119
                      445556899*******7527899****************999.888832211....1333345545531 PP

  == domain 2  score: 10.5 bits;  conditional E-value: 0.00021
  Questin_oxidase  97 ggllHPlIhlGyglefgqpalvaegLAqaavhydsdpse.lls 138
                      +g++HPl+ l  g  +  +a +a++LA +a + ++d+++  ++
       KOO23059.1 150 QGAVHPLVVLLAGGSAATQAYAAQALANMARCTNADAQTvVAK 192
                      79*******************************9888843322 PP

  == domain 3  score: 1.6 bits;  conditional E-value: 0.11
  Questin_oxidase 113 gqpalvaegLAqaavhydsdpsellsae.aas.......................................sraessegsslleiler 160
                      +++  +a +L+ aa+     ++++++++  a+                                       ++a+  ++++++++l+ 
       KOO23059.1 287 SFRSTAAMALGTAALARL-AHQNPSNQDaIARqggikalvdnlgsphgsedprvlanaatalmelcrsnhaNQAAVANHTEAISLLAS 373
                      567889999999999884.444333322222246677777766665554443333333333333333222112222223333333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (432 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       698  (0.0389313); expected 358.6 (0.02)
Passed bias filter:                      359  (0.0200234); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                        14  (0.000780858); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.62u 0.30s 00:00:00.92 Elapsed: 00:00:00.45
# Mc/sec: 2867.93
//
Query:       KOO23060.1  [L=115]
Description: hypothetical protein Ctob_007477 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
     0.0086   16.1   0.4        7.8    6.7   0.1    2.9  3  Arm       Armadillo/beta-catenin-like repeat


Domain annotation for each model (and alignments):
>> Arm  Armadillo/beta-catenin-like repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.0      0.14   2.4e+03      10      19 ..      24      33 ..      17      34 .. 0.64
   2 !    6.2   0.0   0.00062        11       9      37 ..      43      71 ..      40      71 .. 0.85
   3 !    6.7   0.1   0.00044       7.8       7      24 ..      81      98 ..      77     104 .. 0.83

  Alignments for each domain:
  == domain 1  score: -1.2 bits;  conditional E-value: 0.14
                HTTHHHHHHH CS
         Arm 10 eaGavppLvr 19
                   a+++Lv+
  KOO23060.1 24 AVRALEALVQ 33
                4456777776 PP

  == domain 2  score: 6.2 bits;  conditional E-value: 0.00062
                HHTTHHHHHHHHTTTSSHHHHHHHHHHHH CS
         Arm  9 ieaGavppLvrLLssedeevqeeAawALs 37
                 +aG + +Lv+LL+++    +  A+w Ls
  KOO23060.1 43 AKAGPMNALVELLKHGIAPAKDYALWSLS 71
                56666889********9999999999987 PP

  == domain 3  score: 6.7 bits;  conditional E-value: 0.00044
                HHHHTTHHHHHHHHTTTS CS
         Arm  7 avieaGavppLvrLLsse 24
                ++ eaG+v pL++ L ++
  KOO23060.1 81 VIAEAGGVLPLIAQLADQ 98
                577***********9865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (115 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       393  (0.0219198); expected 358.6 (0.02)
Passed bias filter:                      322  (0.0179597); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.24s 00:00:00.63 Elapsed: 00:00:00.41
# Mc/sec: 850.40
//
Query:       KOO23061.1  [L=702]
Description: hypothetical protein Ctob_007474 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.2e-13   49.4   0.9    1.1e-12   47.7   0.9    2.0  1  Chromo         Chromo (CHRromatin Organisation MOdifier) doma
  ------ inclusion threshold ------
      0.033   14.3   0.1       0.07   13.3   0.1    1.5  1  Mtf2_C         Polycomb-like MTF2 factor 2
      0.038   14.5   5.9      0.095   13.2   5.6    1.8  1  Spectrin       Spectrin repeat
      0.084   13.5   0.3       0.23   12.1   0.3    1.7  1  Fe-S_assembly  Iron-sulphur cluster assembly
       0.14   12.7   1.7       0.39   11.2   1.7    1.7  1  DUF16          Protein of unknown function DUF16
       0.15   11.6   0.0       0.29   10.6   0.0    1.4  1  CutC           CutC family


Domain annotation for each model (and alignments):
>> Chromo  Chromo (CHRromatin Organisation MOdifier) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.7   0.9   3.5e-16   1.1e-12       1      48 [.     482     529 ..     482     535 .. 0.91

  Alignments for each domain:
  == domain 1  score: 47.7 bits;  conditional E-value: 3.5e-16
                 EEEEEEEEEEEETTEEC..EEEEEEETTSTGGGTEEEEGGGCSSHSHHHH CS
      Chromo   1 yeVerIidhrtdkdgle..leYlVKWkglpysentWEpeenlekcfqeli 48 
                 +eVe I+++r++ +g++  ++YlVKWkg+ +s +tWE++e + +    li
  KOO23061.1 482 FEVESILNERISGKGKTvhTQYLVKWKGYKESRATWESKESILDE--SLI 529
                 69**************************************99865..455 PP

>> Mtf2_C  Polycomb-like MTF2 factor 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.1   2.4e-05      0.07      27      47 ..     487     510 ..     483     511 .. 0.90

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 2.4e-05
      Mtf2_C  27 vlAkRvtpnGk...vqYLieWeGa 47 
                 +l  R++++Gk   +qYL+ W G+
  KOO23061.1 487 ILNERISGKGKtvhTQYLVKWKGY 510
                 7889*******9999*******97 PP

>> Spectrin  Spectrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   5.6   3.2e-05     0.095      36      98 ..     354     419 ..     347     426 .. 0.87

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 3.2e-05
                 HHHHHH...HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHTTHHHHHHHHHHHHHHHHHHHHHHHH CS
    Spectrin  36 vqallk...khkaleaelaaqqervkalnelaeklldeghsaseeieerleelnerWeeLkelaae 98 
                 vq+ll    ++k+l+a ++ q+  v++l++l  kl+++ ++++++i++rle+++++ + L +  a+
  KOO23061.1 354 VQKLLSdspELKQLHAAITKQEVVVQELEKLIVKLEKKPKKEQKAIQDRLEAVQKALAILVAEEAR 419
                 7888888889*******************************************9987766665555 PP

>> Fe-S_assembly  Iron-sulphur cluster assembly
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.3   7.8e-05      0.23      12      58 ..     363     409 ..     361     410 .. 0.93

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 7.8e-05
  Fe-S_assembly  12 aLyekypdvdpltvrFtdLhewvleLpefdddpeksnEkiLEaIqma 58 
                    +L + +  + +++v  ++L++ +++L++  ++++k+    LEa+q a
     KOO23061.1 363 ELKQLHAAITKQEVVVQELEKLIVKLEKKPKKEQKAIQDRLEAVQKA 409
                    688889999999*********************************86 PP

>> DUF16  Protein of unknown function DUF16
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   1.7   0.00013      0.39      32      90 ..     360     415 ..     338     427 .. 0.74

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00013
                 BHHHHHHHHHHHH...HHHHHHHHHHHHHHHHHHHHHHHHHHHHH.......HHHHHHH CS
       DUF16  32 nkqrLkkieakvdklgeqinkleqkvekqgekikelkveqkaqgeelnkvdetlelile 90 
                    +Lk++ a ++k+++ +++le+ + k+++k    k+eqka +++l++v+++l +++ 
  KOO23061.1 360 DSPELKQLHAAITKQEVVVQELEKLIVKLEKKP---KKEQKAIQDRLEAVQKALAILVA 415
                 556788888888888888888888888888776...56777777777788888877765 PP

>> CutC  CutC family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0   9.6e-05      0.29      96     148 ..     108     162 ..     101     199 .. 0.85

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 9.6e-05
        CutC  96 adgeiDlkaleklieaaegLgvtfHrAf..DvvadpeealeqlielgvervLtsG 148
                 + geiD+ +++ l e a + g t+ + +  D+va+p +a++ +i +   r L + 
  KOO23061.1 108 QRGEIDMTRIKALYEEAAASGYTYSMSLtpDTVAEPRRAIDLIILYCWRRALFKV 162
                 579************9999999999887669*************99999988655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (702 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1006  (0.0561102); expected 358.6 (0.02)
Passed bias filter:                      546  (0.0304535); expected 358.6 (0.02)
Passed Vit filter:                        69  (0.00384851); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.67u 0.29s 00:00:00.96 Elapsed: 00:00:00.45
# Mc/sec: 4716.57
//
Query:       KOO23062.1  [L=676]
Description: hypothetical protein Ctob_007471, partial [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.4e-07   32.0   0.6    3.3e-07   30.7   0.0    1.9  2  FERM_M          FERM central domain
     0.0035   17.2   0.0      0.011   15.7   0.0    1.8  1  FERM_N          FERM N-terminal domain
     0.0039   17.4   0.9      0.011   16.0   0.9    1.7  1  Rx_N            Rx N-terminal domain
  ------ inclusion threshold ------
      0.042   14.7   2.0      0.042   14.7   2.0    2.5  2  PRKG1_interact  cGMP-dependent protein kinase interacting dom
       0.52    9.7   6.1       0.22   11.0   2.0    2.0  2  MIF4G_like_2    MIF4G like
        1.1    9.2   9.3       0.89    9.5   0.4    2.3  2  DUF4192         Domain of unknown function (DUF4192)
          2    9.1   9.6       0.07   13.8   1.3    2.3  2  YabA            Initiation control protein YabA


Domain annotation for each model (and alignments):
>> FERM_M  FERM central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.7   0.0   1.3e-10   3.3e-07       5      93 ..     103     195 ..      99     215 .. 0.87
   2 ?   -2.6   0.4       2.7   6.9e+03      65      73 ..     595     603 ..     514     649 .. 0.64

  Alignments for each domain:
  == domain 1  score: 30.7 bits;  conditional E-value: 1.3e-10
                 TTXHHHHHHHHHHHHHHHHTTSSXXXHHHHHHHHHHHHHHHHHHHHCXXXXXXXSSSX....GGGSSXCHHHHHSXHHHHHHHHHHHHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
      FERM_M   5 kydevrinllYeQakwdllegeldcteeeallLAaLqlqiekgdlsesssekakesln....leeylpprlikklkskqlekrileahqnvaq 93 
                 +++++ i+l++ Qa +d+ +g++ c+ ++a++LAa+++ + +g +++s ++ +  +++     e+++p  l + + + ++e ri ++  ++++
  KOO23062.1 103 VTEKAFIHLFFIQAVSDVQRGNYLCKASDAVKLAAIHYYVWHGPYDPSREQFSIAYMRelrlGEQLMPTPLVTAQVNFDWESRIQKEQMKISD 195
                 678899****************************************9888888888888889999******9999999999999988877765 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 2.7
                 GSSXCHHHH CS
                 xxxxxxxxx RF
      FERM_M  65 eylpprlik 73 
                 ++ ++r  +
  KOO23062.1 595 KLAAKRERQ 603
                 333333333 PP

>> FERM_N  FERM N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.0   4.1e-06     0.011       1      59 [.       9      64 ..       9      69 .. 0.83

  Alignments for each domain:
  == domain 1  score: 15.7 bits;  conditional E-value: 4.1e-06
                EE-TTS-EEEEEEETTSSHHHHHHHHHHHHT-S-GGGEEEEE--SSS-SXEEE-SSS-C CS
      FERM_N  1 VrlLDgtvkeitvddsktvtdlLdtVcarigltehdyFgLvfmeekkdegnWLdhsktL 59
                V +LDg+ k ++v +  tv +lL +V  r+gl  +  F L   + ++   ++L h+++L
  KOO23062.1  9 VYFLDGSCKLFEVASGMTVGQLLAEVKVRLGLAATNAFALYQ-VQRGT--HYLLHENAL 64
                669*************************************98.33333..566666555 PP

>> Rx_N  Rx N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.9   4.2e-06     0.011       4      74 ..     409     479 ..     407     498 .. 0.91

  Alignments for each domain:
  == domain 1  score: 16.0 bits;  conditional E-value: 4.2e-06
        Rx_N   4 allqkLadllaeeakllkgvkeeleklkdeLesiqavLedaeerqikdeavkeWlkelrdlaydaeDvlDe 74 
                 +l  +La++++ e  +++g+++e+e+ k+e e+++ + ++ e  ++ ++ +++  +e+r ++ d+   +De
  KOO23062.1 409 SLATMLAAMASGEGIRIEGMRNEFERVKREIEAMEKMKREYEALRQSHQRLQVENEEVRRIVGDMYVSVDE 479
                 67889**************************************9999999999999999999888777776 PP

>> PRKG1_interact  cGMP-dependent protein kinase interacting domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.7   2.0   1.6e-05     0.042      56      98 ..     429     471 ..     415     474 .. 0.89
   2 ?    1.7   2.8      0.18   4.7e+02      35      60 ..     578     604 ..     544     640 .. 0.52

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 1.6e-05
  PRKG1_interact  56 krerrslerkiseleeelkeleeLraenqrLkdEngALiRVis 98 
                     ++e + ++r+i  +e+  +e e+Lr++ qrL+ En+   R+++
      KOO23062.1 429 RNEFERVKREIEAMEKMKREYEALRQSHQRLQVENEEVRRIVG 471
                     67788899****************************9999986 PP

  == domain 2  score: 1.7 bits;  conditional E-value: 0.18
  PRKG1_interact  35 eklkqqrqe.svskrssllelekrerr 60 
                     e+ k q+q+  ++k+++ l ++++ ++
      KOO23062.1 578 ERRKGQEQQmMNQKEQEKLAAKRERQK 604
                     111111111011222222222222222 PP

>> MIF4G_like_2  MIF4G like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.2   0.1      0.16   4.2e+02     168     215 ..     429     469 ..     406     518 .. 0.62
   2 ?   11.0   2.0   8.6e-05      0.22     168     227 ..     566     621 ..     541     650 .. 0.69

  Alignments for each domain:
  == domain 1  score: 0.2 bits;  conditional E-value: 0.16
  MIF4G_like_2 168 rqeleelkkkeeeekakeeedkeeeeeleraeekleaaqkeqkelfli 215
                   r+e e +k++ e++       ++ ++e e+++++++++q e++e+ +i
    KOO23062.1 429 RNEFERVKREIEAM-------EKMKREYEALRQSHQRLQVENEEVRRI 469
                   33333333333332.......222334444444444444444444444 PP

  == domain 2  score: 11.0 bits;  conditional E-value: 8.6e-05
  MIF4G_like_2 168 rqeleelkkkeeeekakeeed....keeeeeleraeekleaaqkeqkelflivferlveilses 227
                   +q++++l k++e        +    +e++ + ++ +ekl+a+++ qk+l +  fe+l+ +l  +
    KOO23062.1 566 HQRIAKLAKEDE--------ErrkgQEQQMMNQKEQEKLAAKRERQKALNRQAFEALMPLLHRV 621
                   233333333333........2445577788889999**********************999988 PP

>> DUF4192  Domain of unknown function (DUF4192)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   0.4   0.00035      0.89     130     216 ..     411     502 ..     405     539 .. 0.71
   2 ?    2.9   3.3     0.037        94     148     219 ..     565     628 ..     550     656 .. 0.61

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 0.00035
     DUF4192 130 asplaaaavlaGrvvegsReelearlapvegaaaraaqrraaeraaaaleralarprdaerr.....sdpaevrraaleavraalarvaaga 216
                 a+ laa+a  +G ++eg R+e+e++ + +e+ ++ +++ +a+++ +++l+   ++ r+  ++     ++++++r++   ++ ++++ +a+ a
  KOO23062.1 411 ATMLAAMASGEGIRIEGMRNEFERVKREIEAMEKMKREYEALRQSHQRLQVENEEVRRIVGDmyvsvDEDRAIREQYNVLYAEIMESLASSA 502
                 5789*******************999988776544444455555566665555555555555777767777777777777777777777644 PP

  == domain 2  score: 2.9 bits;  conditional E-value: 0.037
     DUF4192 148 Reelearlapvegaaaraaqrraaeraaaaleralarprdaerrsdpaevrraaleavraalarvaagagls 219
                 R++  a la        ++++r+  + ++ + +  +++ +a +r++++++ r+a ea+  +l+rva  ++ s
  KOO23062.1 565 RHQRIAKLAK-------EDEERRKGQEQQMMNQKEQEKLAA-KRERQKALNRQAFEALMPLLHRVAGVKPSS 628
                 5544444443.......222223334444444443333333.3356799****************9955544 PP

>> YabA  Initiation control protein YabA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   1.3   2.7e-05      0.07      15      53 ..     433     476 ..     424     499 .. 0.71
   2 ?   -1.1   1.6       1.1   2.9e+03      40      66 ..     571     596 ..     544     616 .. 0.53

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 2.7e-05
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH.....X CS
        YabA  15 eqleelleeleelkeelaelleenaeLeleneklrerl.....e 53 
                 e++++  e +e++k+e ++l + +++L++ene++r+ +     +
  KOO23062.1 433 ERVKREIEAMEKMKREYEALRQSHQRLQVENEEVRRIVgdmyvS 476
                 4566667889999***********************99433330 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 1.1
                 HHHHHHHHHHHHHXXXXXXXXXXXXXX CS
        YabA  40 eLeleneklrerleeeekkekekkkel 66 
                 +L  e e+ r+ +e++  ++ke++k l
  KOO23062.1 571 KLAKEDEERRKGQEQQMMNQKEQEK-L 596
                 4444555544444222222222211.1 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (676 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2033  (0.113392); expected 358.6 (0.02)
Passed bias filter:                      947  (0.0528195); expected 358.6 (0.02)
Passed Vit filter:                        91  (0.00507558); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.75u 0.34s 00:00:01.09 Elapsed: 00:00:00.48
# Mc/sec: 4210.92
//
Query:       KOO23063.1  [L=67]
Description: hypothetical protein Ctob_007472 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (67 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       197  (0.0109878); expected 358.6 (0.02)
Passed bias filter:                      157  (0.00875676); expected 358.6 (0.02)
Passed Vit filter:                         4  (0.000223102); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.25s 00:00:00.58 Elapsed: 00:00:00.38
# Mc/sec: 521.95
//
Query:       KOO23064.1  [L=64]
Description: hypothetical protein Ctob_007473 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (64 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       253  (0.0141112); expected 358.6 (0.02)
Passed bias filter:                      200  (0.0111551); expected 358.6 (0.02)
Passed Vit filter:                         5  (0.000278878); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.25s 00:00:00.55 Elapsed: 00:00:00.37
# Mc/sec: 518.70
//
Query:       KOO23065.1  [L=444]
Description: hypothetical protein Ctob_007480, partial [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.2e-14   53.7   9.3     0.0061   16.6   0.0    6.8  6  Arm       Armadillo/beta-catenin-like repeat
     0.0037   17.6  15.8      0.043   14.2   1.4    3.5  3  HEAT_2    HEAT repeats
  ------ inclusion threshold ------
      0.028   14.6   1.7        1.5    9.3   0.1    3.7  3  HEAT      HEAT repeat
      0.054   13.5   0.0        9.2    6.3   0.0    2.4  2  Cnd1      non-SMC mitotic condensation complex subunit 1


Domain annotation for each model (and alignments):
>> Arm  Armadillo/beta-catenin-like repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.0   0.0   0.00016      0.73       1      24 [.      27      51 ..      27      61 .. 0.83
   2 !   11.0   0.1   7.9e-05      0.35      16      37 ..      76      97 ..      73     101 .. 0.90
   3 ?    3.7   0.1     0.016        70       6      37 ..     135     168 ..     132     171 .. 0.76
   4 !   16.6   0.0   1.4e-06    0.0061       4      40 ..     176     212 ..     176     213 .. 0.92
   5 ?    4.2   0.2     0.011        48       8      40 ..     221     253 ..     218     254 .. 0.90
   6 !    7.8   0.0   0.00081       3.6       2      22 ..     257     277 ..     255     284 .. 0.81

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.00016
                SHHHHHHHHHTTHHHHHHHHTT.TS CS
         Arm  1 nsenkdavieaGavppLvrLLs.se 24
                ++en+ ++ +aG+vp L r L    
  KOO23065.1 27 DDENRGVIAKAGGVPELARQLAlGS 51
                689****************998743 PP

  == domain 2  score: 11.0 bits;  conditional E-value: 7.9e-05
                HHHHHTTTSSHHHHHHHHHHHH CS
         Arm 16 pLvrLLssedeevqeeAawALs 37
                 Lv+LL sede v++ A +AL+
  KOO23065.1 76 ELVKLLASEDEAVRQRASSALR 97
                69*******************8 PP

  == domain 3  score: 3.7 bits;  conditional E-value: 0.016
                 HHHHHTTHHHHHHHHTT..TSSHHHHHHHHHHHH CS
         Arm   6 davieaGavppLvrLLs..sedeevqeeAawALs 37 
                 +a+++aG+++ L+r L     +e  qe Aa+ Ls
  KOO23065.1 135 EAIVSAGVIQSLIRSLVegRLSEVAQEHAARVLS 168
                 689**********988766666666666666666 PP

  == domain 4  score: 16.6 bits;  conditional E-value: 1.4e-06
                 HHHHHHHTTHHHHHHHHTTTSSHHHHHHHHHHHHHHT CS
         Arm   4 nkdavieaGavppLvrLLssedeevqeeAawALsNLa 40 
                 n +a+ e G+++pL++LL+ ++++ +  Aa++L+ La
  KOO23065.1 176 NAQAIKEGGGIEPLCQLLRRGNPSAKVRAATTLGELA 212
                 56788888**************************997 PP

  == domain 5  score: 4.2 bits;  conditional E-value: 0.011
                 HHHTTHHHHHHHHTTTSSHHHHHHHHHHHHHHT CS
         Arm   8 vieaGavppLvrLLssedeevqeeAawALsNLa 40 
                 v +aGa+ ++v+ L +++ +  e+Aa+ALs +a
  KOO23065.1 221 VAKAGAISAFVSWLVDPNLGQPEVAAAALSDIA 253
                 789***********9999999999999999775 PP

  == domain 6  score: 7.8 bits;  conditional E-value: 0.00081
                 HHHHHHHHHTTHHHHHHHHTT CS
         Arm   2 senkdavieaGavppLvrLLs 22 
                 ++   ++ e Ga++pLv+++ 
  KOO23065.1 257 PDTQAQIAEEGAIEPLVAMIA 277
                 55566778**********986 PP

>> HEAT_2  HEAT repeats
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.8   2.3   0.00011       0.5      23      58 ..      61      99 ..      40     110 .. 0.64
   2 ?   -1.7   0.1      0.89     4e+03      61      83 ..     140     163 ..     127     180 .. 0.56
   3 !   14.2   1.4   9.6e-06     0.043       1      72 [.     186     277 ..     186     284 .. 0.71

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00011
      HEAT_2 23 aLg..rignp.ealpaLvellededpavRraaaeaLgai 58
                 L+   +g++ ++ + Lv+ll +ed+avR+ a  aL  +
  KOO23065.1 61 GLAllALGSRaTVTQELVKLLASEDEAVRQRASSALRDV 99
                444222333224678888888888888888888887655 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 0.89
      HEAT_2  61 pealpaLkelldddd.ddvvReaA 83 
                   ++++L ++l + + ++v +e A
  KOO23065.1 140 AGVIQSLIRSLVEGRlSEVAQEHA 163
                 445555555555444223333333 PP

  == domain 3  score: 14.2 bits;  conditional E-value: 9.6e-06
      HEAT_2   1 ldaLlqalendpdpevrraairaLg..........rignpealpaLvelleded...pavRraaae..aL......gaigdpealpaLkelld 72 
                 +++L+q+l +  +p  + +a+ +Lg          + +   a+ a+v++l d++   p+v +aa    aL      ++i+++ a++ L ++ +
  KOO23065.1 186 IEPLCQLL-RRGNPSAKVRAATTLGelalragaalDVAKAGAISAFVSWLVDPNlgqPEVAAAALSdiALdnpdtqAQIAEEGAIEPLVAMIA 277
                 689*****.889999999999999955565555444445588***********9666677777765334433333336677888888887665 PP

>> HEAT  HEAT repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3   0.1   0.00033       1.5       5      28 ..      77     100 ..      74     102 .. 0.91
   2 ?    1.5   0.0      0.11   4.8e+02      11      25 ..     197     209 ..     186     213 .. 0.51
   3 ?   -0.7   0.0      0.53   2.4e+03       8      28 ..     233     253 ..     227     254 .. 0.65

  Alignments for each domain:
  == domain 1  score: 9.3 bits;  conditional E-value: 0.00033
                 HHHHHT-SSHHHHHHHHHHHHHHH CS
        HEAT   5 llkllsDpspeVReaAakaLgala 28 
                 l+kll +++  VR+ A  aL ++a
  KOO23065.1  77 LVKLLASEDEAVRQRASSALRDVA 100
                 899*****************9987 PP

  == domain 2  score: 1.5 bits;  conditional E-value: 0.11
                 -SSHHHHHHHHHHHH CS
        HEAT  11 DpspeVReaAakaLg 25 
                  ps++VR+a   +Lg
  KOO23065.1 197 NPSAKVRAA--TTLG 209
                 355555555..5555 PP

  == domain 3  score: -0.7 bits;  conditional E-value: 0.53
                 HHT-SSHHHHHHHHHHHHHHH CS
        HEAT   8 llsDpspeVReaAakaLgala 28 
                 +l Dp+  + e Aa aL ++a
  KOO23065.1 233 WLVDPNLGQPEVAAAALSDIA 253
                 555555555577889998886 PP

>> Cnd1  non-SMC mitotic condensation complex subunit 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.6   0.0    0.0067        30      59      93 ..      73     107 ..      62     172 .. 0.69
   2 ?    6.3   0.0     0.002       9.2      23      96 ..     186     263 ..     184     274 .. 0.83

  Alignments for each domain:
  == domain 1  score: 4.6 bits;  conditional E-value: 0.0067
        Cnd1  59 flselaklleDenprVvanalaalteiseksenai 93 
                 + +el kll  e++ V++ a +al +++  ++++ 
  KOO23065.1  73 VTQELVKLLASEDEAVRQRASSALRDVAAGEKMNK 107
                 56789999999999999999999999988765443 PP

  == domain 2  score: 6.3 bits;  conditional E-value: 0.002
        Cnd1  23 vepLrkrLkDedpyVRktaaivvakL.ilndm...vkekgflselaklleDenprVvanalaalteiseksenaiynl 96 
                 +epL++ L+  +p  +  aa ++ +L ++++    v + g +s + + l D+n    + a aal++i+  ++++  ++
  KOO23065.1 186 IEPLCQLLRRGNPSAKVRAATTLGELaLRAGAaldVAKAGAISAFVSWLVDPNLGQPEVAAAALSDIALDNPDTQAQI 263
                 6899999999999999999999999975555433577888*************999999********99877666555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (444 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       599  (0.0334096); expected 358.6 (0.02)
Passed bias filter:                      307  (0.0171231); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.51u 0.26s 00:00:00.77 Elapsed: 00:00:00.42
# Mc/sec: 3180.92
//
Query:       KOO23066.1  [L=538]
Description: flagellar associated protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.16   12.1   0.1       0.43   10.7   0.1    1.7  1  zf_ZIC    Zic proteins zinc finger domain


Domain annotation for each model (and alignments):
>> zf_ZIC  Zic proteins zinc finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.1   2.4e-05      0.43      11      35 ..     466     489 ..     454     494 .. 0.83

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 2.4e-05
                 -B--TT-SSS-------BSSHHHHH CS
      zf_ZIC  11 kWideeqgspkkpCsktFstmhelV 35 
                  W de+  +p++pC++ F  + el 
  KOO23066.1 466 DWEDED-YDPRQPCNRAFAHLLELL 489
                 577775.5************99985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (538 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       661  (0.0368676); expected 358.6 (0.02)
Passed bias filter:                      492  (0.0274416); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.55u 0.25s 00:00:00.80 Elapsed: 00:00:00.41
# Mc/sec: 3952.33
//
Query:       KOO23067.1  [L=490]
Description: patatin-like serine [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.9e-17   62.5   0.5    1.2e-16   61.5   0.2    1.7  2  Patatin   Patatin-like phospholipase
    5.9e-12   45.5   0.0    8.7e-12   44.9   0.0    1.3  1  DUF3336   Domain of unknown function (DUF3336)


Domain annotation for each model (and alignments):
>> Patatin  Patatin-like phospholipase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.5   0.2   1.4e-20   1.2e-16       1     185 [.      80     249 ..      80     297 .. 0.83
   2 ?   -2.0   0.0      0.37   3.3e+03     106     132 ..     394     428 ..     338     470 .. 0.50

  Alignments for each domain:
  == domain 1  score: 61.5 bits;  conditional E-value: 1.4e-20
     Patatin   1 LvlsGGGsrgafslgalkaLkkelgerfdiisGtSaGAiialllalgrdpaalvddlrnlllnkifdrdllirelaanlaarlsgllgkgglfdaealr 99 
                 L+lsGGG ++ fs g+ +aL  e    + +i+GtSaGA++++ l++  ++++lv+ l +  l++   ++         +++  +++l+ g+l+da  ++
  KOO23067.1  80 LALSGGGGLANFSWGVARAL-FEQRLLPSLICGTSAGAVVGATLCTH-TDQELVELLTASQLSQLLTSF------EEPRWVTIRRFLTSGTLYDAAQWK 170
                 89*****************9.9************************9.666668888888888888877......79999******************* PP

     Patatin 100 ellrkvladktlkrlsarlgklpllkslftanqavpaittataatastanranglytedddddvdladavraSsafPglfppvsl.....d 185
                 + ++++ +     +l+++ ++  ++            +   +++ta ++  +   ++   ++dv +a+av+a+ a+P+l+p+++l     d
  KOO23067.1 171 PKIEALCNQARHPDLTFQEAFELTG------------RELCVTVTARRRHEPPLVLSRLSAPDVTVASAVLATVAMPFLIPAQRLvckasD 249
                 ****998888888888888888654............55899999999999999999999********************99988444442 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 0.37
     Patatin 106 ladktlkrlsarlgklpllks.........lftanq 132
                 +++++lk++++ l+ ++  +            t ++
  KOO23067.1 394 IPPLGLKDYARMLSDPT-PAImqryldvgqRETWRK 428
                 44444444444444441.111222222222222222 PP

>> DUF3336  Domain of unknown function (DUF3336)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.9   0.0   9.8e-16   8.7e-12      70     121 ..       2      53 ..       1      73 [. 0.82

  Alignments for each domain:
  == domain 1  score: 44.9 bits;  conditional E-value: 9.8e-16
     DUF3336  70 kellellrtclkrNfagienprLYsetyiGTKklieeYidevekalellaet 121
                 ++ll +l tc+++ f gi+n+ LY +++ GTK lie+Y+dev+++l  + ++
  KOO23067.1   2 EALLGALGTCVRKSFSGIDNEALYAHCHAGTKLLIEKYVDEVVASLAEVQSH 53 
                 678999****************************************999654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (490 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       413  (0.0230353); expected 358.6 (0.02)
Passed bias filter:                      363  (0.0202465); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.51u 0.24s 00:00:00.75 Elapsed: 00:00:00.41
# Mc/sec: 3573.71
//
Query:       KOO23068.1  [L=236]
Description: hypothetical protein Ctob_010467 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.5e-06   28.4   0.2    2.1e-06   27.8   0.2    1.2  1  Nucleotid_trans  Nucleotide-diphospho-sugar transferase
  ------ inclusion threshold ------
       0.13   12.1   0.0       0.18   11.6   0.0    1.2  1  PCuAC            Copper chaperone PCu(A)C


Domain annotation for each model (and alignments):
>> Nucleotid_trans  Nucleotide-diphospho-sugar transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.8   0.2   2.4e-10   2.1e-06      45      99 ..     167     222 ..     131     234 .. 0.71

  Alignments for each domain:
  == domain 1  score: 27.8 bits;  conditional E-value: 2.4e-10
  Nucleotid_trans  45 sktykkmswrkvrlllellklGynvllsDvDvvWlrnpfpllky.edaDvlvssDs 99 
                      +     ++ +k + + el++lG+ vl  D+D+vW+ +pf +l+   ++ ++ + D 
       KOO23068.1 167 KGWRFPFYYLKKKYMFELVRLGFAVLQVDTDTVWMHDPFAMLRLmTRSSLIAMRDV 222
                      444556888999******************************55566777777674 PP

>> PCuAC  Copper chaperone PCu(A)C
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0     2e-05      0.18      18      83 ..      55     129 ..       5     134 .. 0.78

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 2e-05
                 E.........EEEEEECSSSEEEEEEEE-TTCCEEEEE.EETTTCEEEEEECS.SEEEETTEEEEE-TTSC..EEEEE CS
       PCuAC  18 a.........ymtirNtgdeddkLvaassdvaasvelh.tvvedgvmkmrqveegieipaggqveLkpggf..hvMli 83 
                 +         ++ + N+ +++  L aa+s va++v  h + +   +m+  + + +++   ++ v+L + g   hvMl+
  KOO23068.1  55 IhgdvptlpyFGSLLNDLESPGGLYAAASAVARTVGTHkELI---MMATGPDKTSVQMTNNSLVSLGRLGLrpHVMLL 129
                 0455555555999*************************6666...8999999999999********999865599986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (236 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       352  (0.019633); expected 358.6 (0.02)
Passed bias filter:                      303  (0.0169); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.41u 0.30s 00:00:00.71 Elapsed: 00:00:00.43
# Mc/sec: 1632.06
//
Query:       KOO23069.1  [L=283]
Description: hypothetical protein Ctob_010466 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        6.9    6.6   8.5        4.2    7.3   2.0    2.3  2  TetR_C_13  Tetracyclin repressor-like, C-terminal domain
        9.1    7.0   8.2       0.24   12.1   0.8    2.3  3  LptE       Lipopolysaccharide-assembly


Domain annotation for each model (and alignments):
>> TetR_C_13  Tetracyclin repressor-like, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.8   0.5     0.012   1.1e+02      39      90 ..      91     142 ..      82     154 .. 0.77
   2 ?    7.3   2.0   0.00046       4.2      32      92 ..     186     249 ..     182     259 .. 0.82

  Alignments for each domain:
  == domain 1  score: 2.8 bits;  conditional E-value: 0.012
                 -TTHHHHHHHHHHHHHHHHHHHHHHHHCTTSS-TTS-HHHHHHHHHHHHHHH CS
   TetR_C_13  39 pesfrerleevledwqkrvaacleeaqeageiaadadaeelaeffwigWeGA 90 
                 ++++++rl+ v ++ ++ v  + +e q++ +++  +  +++ +f + gW+ A
  KOO23069.1  91 NQQLEKRLQVVEQHLDHFVLGAEREKQRKVNLTLRRWKHKWVAFAFDGWKLA 142
                 4566677777777777777778888899999999999999999******744 PP

  == domain 2  score: 7.3 bits;  conditional E-value: 0.00046
                 HHTGGGS-TTHHHHHHHHHHHHHHHHHH...HHHHHHCTTSS-TTS-HHHHHHHHHHHHHHHHH CS
   TetR_C_13  32 gqEvaalpesfrerleevledwqkrvaa...cleeaqeageiaadadaeelaeffwigWeGAvl 92 
                 g E+a + + +r++l+ +l ++  + ++   ++++  ++ + a+++ a++la  ++  W+G +l
  KOO23069.1 186 GHEAARQATLLRKALNWMLRSYLVHSFDawnVFQAKSQEARAAREEAAAKLARQLVLRWQGSML 249
                 6788899999999999999999888777444667777778888999999************987 PP

>> LptE  Lipopolysaccharide-assembly
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.0      0.53   4.7e+03      21      26 ..      77      82 ..      55     125 .. 0.66
   2 ?   12.1   0.8   2.7e-05      0.24      73     106 ..     204     243 ..     135     244 .. 0.69
   3 ?   -2.9   0.3       1.3   1.2e+04      83      97 ..     258     272 ..     257     274 .. 0.72

  Alignments for each domain:
  == domain 1  score: -1.7 bits;  conditional E-value: 0.53
                HHHHHH CS
        LptE 21 ltnaLr 26
                l++ Lr
  KOO23069.1 77 LRRLLR 82
                222222 PP

  == domain 2  score: 12.1 bits;  conditional E-value: 2.7e-05
                 EEETTS.......SSCCCHHHHHHHHHH.HHHHHHHHHHHHH CS
        LptE  73 ltdakd.......adsllakeaeedalr.raaeqladqivrr 106
                 l++  +        + ++ak++e +a+r +aa +la+q+v r
  KOO23069.1 204 LRS--YlvhsfdaWNVFQAKSQEARAAReEAAAKLARQLVLR 243
                 444..45555666455789********************987 PP

  == domain 3  score: -2.9 bits;  conditional E-value: 1.3
                 CHHHHHHHHHHHHHH CS
        LptE  83 lakeaeedalrraae 97 
                 +a+++++++lrr a+
  KOO23069.1 258 SANRERRALLRRVAD 272
                 567788888888876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (283 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       775  (0.0432261); expected 358.6 (0.02)
Passed bias filter:                      435  (0.0242624); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.45u 0.28s 00:00:00.73 Elapsed: 00:00:00.43
# Mc/sec: 1954.32
//
Query:       KOO23070.1  [L=433]
Description: protein nlrc3 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.3e-23   80.2  26.8     0.0033   17.4   0.0   10.5 10  LRR_6     Leucine Rich repeat
    4.2e-07   30.2   7.3        2.4    8.7   0.2    6.1  6  LRR_4     Leucine Rich repeats (2 copies)
    1.3e-05   25.0   7.4        4.6    8.2   0.0    6.8  7  LRR_1     Leucine Rich Repeat
  ------ inclusion threshold ------
        0.3   10.9  20.4        3.6    7.4   3.0    6.1  7  LRR_8     Leucine rich repeat


Domain annotation for each model (and alignments):
>> LRR_6  Leucine Rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.4   0.1       0.2   8.9e+02       4      24 .]      62      82 ..      61      82 .. 0.87
   2 !   14.1   0.0   8.1e-06     0.036       3      24 .]      89     111 ..      88     111 .. 0.95
   3 ?    2.6   0.0      0.04   1.8e+02       3      24 .]     121     142 ..     119     142 .. 0.91
   4 !    6.6   0.1     0.002       9.1       1      24 []     147     170 ..     147     170 .. 0.93
   5 !   14.2   0.2   7.3e-06     0.033       4      24 .]     207     227 ..     205     227 .. 0.95
   6 !   17.4   0.0   7.3e-07    0.0033       1      24 []     232     255 ..     232     255 .. 0.96
   7 !   10.0   0.0   0.00017      0.75       4      20 ..     264     280 ..     261     283 .. 0.89
   8 !    6.0   0.1    0.0033        15       1      24 []     289     312 ..     289     312 .. 0.94
   9 ?    2.6   0.2     0.039   1.7e+02       1      12 [.     318     329 ..     318     329 .. 0.91
  10 !   16.7   0.4   1.2e-06    0.0052       1      22 [.     362     383 ..     362     385 .. 0.92

  Alignments for each domain:
  == domain 1  score: 0.4 bits;  conditional E-value: 0.2
       LRR_6  4 hLteLdLsgNdIgDeGaeaLa 24
                +Lt+L+L   ++g  Ga aLa
  KOO23070.1 62 SLTSLSLVEAGMGEHGALALA 82
                79*****99999999999987 PP

  == domain 2  score: 14.1 bits;  conditional E-value: 8.1e-06
       LRR_6   3 thLteLdLsgNd.IgDeGaeaLa 24 
                 ++Lt LdL+gN  +g  G+ aLa
  KOO23070.1  89 PSLTRLDLTGNRdMGATGGAALA 111
                 58*******************98 PP

  == domain 3  score: 2.6 bits;  conditional E-value: 0.04
       LRR_6   3 thLteLdLsgNdIgDeGaeaLa 24 
                 + L++L+L +  +g +G++a+a
  KOO23070.1 121 SLLQSLSLYDTRLGLVGIQAIA 142
                 5699****************98 PP

  == domain 4  score: 6.6 bits;  conditional E-value: 0.002
       LRR_6   1 snthLteLdLsgNdIgDeGaeaLa 24 
                 +n++L +Ld  +N +g eGa++La
  KOO23070.1 147 KNRSLLHLDACSNRLGVEGAQCLA 170
                 69999999999***********98 PP

  == domain 5  score: 14.2 bits;  conditional E-value: 7.3e-06
       LRR_6   4 hLteLdLsgNdIgDeGaeaLa 24 
                 +L+ L+L  N++g++G++a+a
  KOO23070.1 207 TLENLELGNNQLGNAGGIAFA 227
                 89*****************97 PP

  == domain 6  score: 17.4 bits;  conditional E-value: 7.3e-07
       LRR_6   1 snthLteLdLsgNdIgDeGaeaLa 24 
                 +++hL++L+L +N+Ig  Ga+ L+
  KOO23070.1 232 HSRHLRALSLYSNGIGSPGAKELC 255
                 799*******************98 PP

  == domain 7  score: 10.0 bits;  conditional E-value: 0.00017
       LRR_6   4 hLteLdLsgNdIgDeGa 20 
                 +L++LdL++N +g  Ga
  KOO23070.1 264 SLRSLDLQDNPLGERGA 280
                 8***********98887 PP

  == domain 8  score: 6.0 bits;  conditional E-value: 0.0033
       LRR_6   1 snthLteLdLsgNdIgDeGaeaLa 24 
                 +n +Lt+L +sg +Ig  G++aL+
  KOO23070.1 289 KNASLTSLVISGRHIGEGGVTALS 312
                 699******************996 PP

  == domain 9  score: 2.6 bits;  conditional E-value: 0.039
       LRR_6   1 snthLteLdLsg 12 
                 sn++L  LdLs+
  KOO23070.1 318 SNRTLARLDLSS 329
                 69********96 PP

  == domain 10  score: 16.7 bits;  conditional E-value: 1.2e-06
       LRR_6   1 snthLteLdLsgNdIgDeGaea 22 
                 +n+ L++L+L gN +gD+Ga +
  KOO23070.1 362 NNSGLQHLNLEGNALGDAGARK 383
                 6999***************987 PP

>> LRR_4  Leucine Rich repeats (2 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.0         3   1.4e+04      24      30 ..      62      68 ..      59      72 .. 0.66
   2 ?    3.0   0.0     0.033   1.5e+02      23      33 ..      89      99 ..      81     103 .. 0.80
   3 ?    2.9   0.1     0.035   1.6e+02       3      33 ..     123     159 ..     121     165 .. 0.66
   4 !    8.7   0.2   0.00055       2.4       3      35 ..     208     245 ..     206     249 .. 0.74
   5 !    6.9   0.0    0.0019       8.7       2      32 ..     264     300 ..     263     305 .. 0.79
   6 !    6.8   0.1    0.0021       9.2       2      18 ..     365     381 ..     356     400 .. 0.68

  Alignments for each domain:
  == domain 1  score: -3.2 bits;  conditional E-value: 3
                T--EEE- CS
       LRR_4 24 nLkeLdL 30
                +L++L+L
  KOO23070.1 62 SLTSLSL 68
                4555555 PP

  == domain 2  score: 3.0 bits;  conditional E-value: 0.033
                TT--EEE-.-S CS
       LRR_4 23 pnLkeLdLsgN 33
                p+L+ LdL+gN
  KOO23070.1 89 PSLTRLDLTGN 99
                66777887777 PP

  == domain 3  score: 2.9 bits;  conditional E-value: 0.035
                 --EEE--SS---E-S-.......HHH-TT--EEE.-.-S CS
       LRR_4   3 LevLdLsnNqltdipl.......leklpnLkeLd.LsgN 33 
                 L++L+L +++l  + +       l+k+ +L +Ld + +N
  KOO23070.1 123 LQSLSLYDTRLG-LVGiqaiakaLRKNRSLLHLDaC-SN 159
                 889999999855.22213344456689999999955.55 PP

  == domain 4  score: 8.7 bits;  conditional E-value: 0.00055
                 --EEE--SS---E-S-..HHH.-TT...--EEE-.-S-- CS
       LRR_4   3 LevLdLsnNqltdipl..lek.lpn...LkeLdLsgNnl 35 
                 Le+L L+nNql   ++  +++ l++   L+ L+L +N  
  KOO23070.1 208 LENLELGNNQLGNAGGiaFASvLKHsrhLRALSLYSN-G 245
                 99********999888665544555555999999666.4 PP

  == domain 5  score: 6.9 bits;  conditional E-value: 0.0019
                 S--EEE--SS---E-S-......HHH-TT--EEE-.- CS
       LRR_4   2 nLevLdLsnNqltdipl......leklpnLkeLdLsg 32 
                 +L++LdL++N l + +       l+k+ +L++L +sg
  KOO23070.1 264 SLRSLDLQDNPLGERGArdvgimLRKNASLTSLVISG 300
                 799*****99999877777666666888899988876 PP

  == domain 6  score: 6.8 bits;  conditional E-value: 0.0021
                 S--EEE--SS---E-S- CS
       LRR_4   2 nLevLdLsnNqltdipl 18 
                  L++L+L +N l d + 
  KOO23070.1 365 GLQHLNLEGNALGDAGA 381
                 46666666666666555 PP

>> LRR_1  Leucine Rich Repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.3   0.0     0.042   1.9e+02       1      11 [.      90     100 ..      90     116 .. 0.90
   2 ?   -3.2   0.0         4   1.8e+04       2      12 ..     123     133 ..     123     141 .. 0.75
   3 ?    1.4   0.0      0.17   7.7e+02       2      20 ..     151     169 ..     150     172 .. 0.83
   4 ?    2.3   0.7     0.086   3.9e+02       2      13 ..     208     219 ..     207     256 .. 0.68
   5 !    8.2   0.0     0.001       4.6       1      17 [.     264     280 ..     264     291 .. 0.83
   6 ?   -4.0   0.1         4   1.8e+04       4       9 ..     324     329 ..     322     331 .. 0.76
   7 !    6.0   0.0    0.0052        23       2      13 ..     366     377 ..     365     391 .. 0.85

  Alignments for each domain:
  == domain 1  score: 3.3 bits;  conditional E-value: 0.042
       LRR_1   1 nLrhLdLsnnp 11 
                 +L++LdL++n+
  KOO23070.1  90 SLTRLDLTGNR 100
                 69*******97 PP

  == domain 2  score: -3.2 bits;  conditional E-value: 4
       LRR_1   2 LrhLdLsnnpl 12 
                 L++L L + +l
  KOO23070.1 123 LQSLSLYDTRL 133
                 88999977665 PP

  == domain 3  score: 1.4 bits;  conditional E-value: 0.17
       LRR_1   2 LrhLdLsnnpllglppnsf 20 
                 L hLd ++n+l+  +++++
  KOO23070.1 151 LLHLDACSNRLGVEGAQCL 169
                 789*******988888876 PP

  == domain 4  score: 2.3 bits;  conditional E-value: 0.086
       LRR_1   2 LrhLdLsnnpll 13 
                 L+ L L+nn+l+
  KOO23070.1 208 LENLELGNNQLG 219
                 788888888872 PP

  == domain 5  score: 8.2 bits;  conditional E-value: 0.001
       LRR_1   1 nLrhLdLsnnpllglpp 17 
                 +Lr+LdL +npl+  ++
  KOO23070.1 264 SLRSLDLQDNPLGERGA 280
                 69*********965555 PP

  == domain 6  score: -4.0 bits;  conditional E-value: 4
       LRR_1   4 hLdLsn 9  
                 +LdLs+
  KOO23070.1 324 RLDLSS 329
                 799975 PP

  == domain 7  score: 6.0 bits;  conditional E-value: 0.0052
       LRR_1   2 LrhLdLsnnpll 13 
                 L+hL+L++n l+
  KOO23070.1 366 LQHLNLEGNALG 377
                 9********875 PP

>> LRR_8  Leucine rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.0       1.6   7.1e+03      47      56 ..      59      68 ..      49      69 .. 0.59
   2 ?    3.1   0.0     0.018        83      49      60 ..      89     100 ..      83     100 .. 0.72
   3 ?   -1.0   0.3      0.35   1.6e+03      43      59 ..     143     159 ..     121     161 .. 0.54
   4 ?    7.4   3.0   0.00081       3.6       3      61 .]     208     275 ..     207     275 .. 0.73
   5 ?   -2.4   0.0      0.91   4.1e+03      49      58 ..     291     300 ..     286     303 .. 0.59
   6 ?   -3.5   0.0       2.1   9.4e+03      27      33 ..     322     328 ..     317     329 .. 0.51
   7 ?    7.0   0.1    0.0011       4.8      22      37 ..     361     376 ..     356     390 .. 0.67

  Alignments for each domain:
  == domain 1  score: -3.1 bits;  conditional E-value: 1.6
                T--S-.EEE- CS
       LRR_8 47 gLpsLrsLdL 56
                g  sL+sL L
  KOO23070.1 59 GTVSLTSLSL 68
                4556666655 PP

  == domain 2  score: 3.1 bits;  conditional E-value: 0.018
                 -S-.EEE--SS- CS
       LRR_8  49 psLrsLdLsgNr 60 
                 psL+ LdL+gNr
  KOO23070.1  89 PSLTRLDLTGNR 100
                 567777777775 PP

  == domain 3  score: -1.0 bits;  conditional E-value: 0.35
                 GGGTT--S-.EEE--SS CS
       LRR_8  43 gafsgLpsLrsLdLsgN 59 
                 +a++  +sL +Ld  +N
  KOO23070.1 143 KALRKNRSLLHLDACSN 159
                 44444455555554444 PP

  == domain 4  score: 7.4 bits;  conditional E-value: 0.00081
                 -SEEE-TTS--SEE-TTSSTT.-...TT--EEE--SS---GGGGGGGTT-.....-S-.EEE--SS-- CS
       LRR_8   3 LtsLdLsnNrltslddeaFkg.l...snLkvLdLsnNllttlspgafsgL.....psLrsLdLsgNrL 61 
                 L++L L nN+l + +  aF + l   ++L+ L+L +N + +  ++ + +      +sLrsLdL++N+L
  KOO23070.1 208 LENLELGNNQLGNAGGIAFASvLkhsRHLRALSLYSNGIGSPGAKELCSAlgrddASLRSLDLQDNPL 275
                 999************9999764422268999******9987555555332233447899999999886 PP

  == domain 5  score: -2.4 bits;  conditional E-value: 0.91
                 -S-.EEE--S CS
       LRR_8  49 psLrsLdLsg 58 
                 +sL+sL +sg
  KOO23070.1 291 ASLTSLVISG 300
                 5666666665 PP

  == domain 6  score: -3.5 bits;  conditional E-value: 2.1
                 --EEE-- CS
       LRR_8  27 LkvLdLs 33 
                 L  LdLs
  KOO23070.1 322 LARLDLS 328
                 4444444 PP

  == domain 7  score: 7.0 bits;  conditional E-value: 0.0011
                 TT-TT--EEE--SS-- CS
       LRR_8  22 kglsnLkvLdLsnNll 37 
                  ++s+L++L+L  N l
  KOO23070.1 361 ANNSGLQHLNLEGNAL 376
                 4556666666666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (433 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       201  (0.0112109); expected 358.6 (0.02)
Passed bias filter:                      180  (0.0100396); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.45u 0.22s 00:00:00.67 Elapsed: 00:00:00.39
# Mc/sec: 3333.95
//
Query:       KOO23071.1  [L=551]
Description: DNA polymerase lambda [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.8e-21   75.5   0.0    6.9e-21   74.2   0.0    1.7  1  DNA_pol_B_thumb  DNA polymerase beta thumb
    2.3e-18   66.5   0.1      1e-17   64.4   0.1    2.1  2  DNA_pol_B_palm   DNA polymerase beta palm
    3.1e-13   49.3   0.4    1.1e-12   47.5   0.0    2.1  2  DNA_pol_lambd_f  Fingers domain of DNA polymerase lambda
    6.5e-11   42.4   0.2    2.2e-08   34.3   0.0    2.7  2  HHH_8            Helix-hairpin-helix domain
     0.0081   16.7   0.1       0.24   12.0   0.0    2.4  2  HHH_5            Helix-hairpin-helix domain
  ------ inclusion threshold ------
      0.011   15.5   0.0       0.17   11.7   0.0    2.5  3  DnaB_2           Replication initiation and membrane attachme
       0.05   13.4   0.0       0.12   12.2   0.0    1.6  1  RNA_pol_A_CTD    Bacterial RNA polymerase, alpha chain C term
        0.1   12.9   0.1        1.2    9.5   0.0    2.4  2  HHH_3            Helix-hairpin-helix motif


Domain annotation for each model (and alignments):
>> DNA_pol_B_thumb  DNA polymerase beta thumb
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   74.2   0.0   3.1e-24   6.9e-21       1      70 []     463     537 ..     463     537 .. 0.84

  Alignments for each domain:
  == domain 1  score: 74.2 bits;  conditional E-value: 3.1e-24
                      HHHHHHS-HHHHHHHHHHHHCTTEEEETTEEE............ETCCCEEEC-SSHHHHHHHCTS----GGGTT CS
  DNA_pol_B_thumb   1 allyfTGsktFnrdlRrlakkkglkLnssglrdek.....gkaeddddgelvevetErdvfelLglpyipPeeRe 70 
                      allyfTGs++Fnr++R++ak  g++L+++g+         +++  + +++l e +tE+++fe Lgl+y++P +R+
       KOO23071.1 463 ALLYFTGSDHFNRSMRHYAKTLGYSLSDHGIVHAVkmaggKDNCVRGTKNLFEARTEQEIFEKLGLQYVEPSQRN 537
                      89******************************62245553344444444488**********************7 PP

>> DNA_pol_B_palm  DNA polymerase beta palm
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.6   0.0       5.7   1.3e+04      19      36 ..     246     263 ..     236     267 .. 0.79
   2 !   64.4   0.1   4.6e-21     1e-17       1     113 [.     326     456 ..     326     457 .. 0.78

  Alignments for each domain:
  == domain 1  score: -3.6 bits;  conditional E-value: 5.7
                     HHH-TT-EEEE-HHHHTT CS
  DNA_pol_B_palm  19 keldpevevivcGSYRRg 36 
                     k++d+ +e++++G  RR 
      KOO23071.1 246 KSVDKIAELLATGALRRL 263
                     678888899999999985 PP

  == domain 2  score: 64.4 bits;  conditional E-value: 4.6e-21
                     -EEHHHHHHHHHHHHHHHHHH-TT...........-EEEE-HHHHTT-SEESSEEEEEEBTTBSTTSS--HHHHHHHHHHHHHTTSEEEEEE... CS
  DNA_pol_B_palm   1 riPreEvealealvkkaakeldpe...........vevivcGSYRRgaessGDvDvlitkkdakseskklkklleklvkklkkkgfltdsLav.. 82 
                     riPr+Ev+a+ ++v+ a+++                ++++ GSYRRg+ ssGDvDvl++++d+ s+    ++l+e++++ +k++g+ +++L+   
      KOO23071.1 326 RIPRAEVTAIVDAVRVALRATLGArgvpahaidgaGDATASGSYRRGKPSSGDVDVLLCRRDGGSD----EGLIEQILEYMKAAGVSVHHLTHee 416
                     9*************977654322223333333333899***************************4....6899999999999999999998866 PP

                     ........E-......SSEEEEEEE---SSSTS-EEEEEEEEE- CS
  DNA_pol_B_palm  83 .......esg......eskfmGvcrlpeeekkelhrRiDlklvp 113
                            + +       s++ G+ rlp+    elhrR+Dlkl+p
      KOO23071.1 417 evqrgraQ-RsvrtatCSSYRGIIRLPG-Y--ELHRRLDLKLYP 456
                     66665541.155666689**********.3..7*********99 PP

>> DNA_pol_lambd_f  Fingers domain of DNA polymerase lambda
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.5   0.0   4.9e-16   1.1e-12       2      50 .]     277     324 ..     276     324 .. 0.96
   2 ?   -1.8   0.1       1.3   2.9e+03       7      21 ..     358     372 ..     356     379 .. 0.83

  Alignments for each domain:
  == domain 1  score: 47.5 bits;  conditional E-value: 4.9e-16
  DNA_pol_lambd_f   2 lFtkvyGVGpktAkkwyakGirtledlrakrakLtreqqiGlkyyeDlq 50 
                      ++tkv+GVG k+A++wyakGi+++e +++     t  q++G ++y Dlq
       KOO23071.1 277 ELTKVHGVGCKIASDWYAKGITSVEAAVQ-SGLMTATQRVGARFYKDLQ 324
                      69***************************.699**************98 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 1.3
  DNA_pol_lambd_f   7 yGVGpktAkkwyakG 21 
                       G G +tA+  y++G
       KOO23071.1 358 DGAGDATASGSYRRG 372
                      599*****9988888 PP

>> HHH_8  Helix-hairpin-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.3   0.0   9.9e-12   2.2e-08       4      67 ..     193     255 ..     190     256 .. 0.96
   2 !    5.8   0.0     0.008        18      33      61 ..     258     290 ..     255     293 .. 0.74

  Alignments for each domain:
  == domain 1  score: 34.3 bits;  conditional E-value: 9.9e-12
                 HHHHHHHHHHHHHHCT--CCCHHHHHHHHCCCCC-SS-HHHHTTHCTTSTT--HHHHHHHHHHH CS
       HHH_8   4 iadaLeeladllelkgedpfrvraYrrAaraiealpeeitsleeeltklpgiGkkiaakieeil 67 
                 +ad L++la  ++  g+d++r  a+++ a+ +++l+ e+t++++ l +++ +G+k  +ki+e+l
  KOO23071.1 193 LADELDKLAAHYKAVGNDEWRYFAFSKQAKKLRDLTWEVTDAKQ-LLSVRSFGQKSVDKIAELL 255
                 7999*************************************999.*****************98 PP

  == domain 2  score: 5.8 bits;  conditional E-value: 0.008
                 CCCCC-SS.-HHHHTT...HCTTSTT--HHHHH CS
       HHH_8  33 raiealpe.eitslee...eltklpgiGkkiaa 61 
                  a+++l++ + t+ ++   eltk+ g+G kia 
  KOO23071.1 258 GALRRLETmQSTDRAQalaELTKVHGVGCKIAS 290
                 567777776666653446779**********96 PP

>> HHH_5  Helix-hairpin-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.0   0.0      0.14   3.2e+02      33      53 ..     233     253 ..     218     257 .. 0.80
   2 !   12.0   0.0   0.00011      0.24       3      28 ..     277     302 ..     275     313 .. 0.91

  Alignments for each domain:
  == domain 1  score: 2.0 bits;  conditional E-value: 0.14
                 -HHHHHTSTTS-HHHHHHHHH CS
       HHH_5  33 dveeLakipGiGkktAeriil 53 
                 d+++L ++  +G+k +++i +
  KOO23071.1 233 DAKQLLSVRSFGQKSVDKIAE 253
                 889999999999999999965 PP

  == domain 2  score: 12.0 bits;  conditional E-value: 0.00011
                 HHHTSTT--HHHHHHHHTTT--SHHH CS
       HHH_5   3 eLlsvsGiGpktAlallsaGiesved 28 
                 eL++v G+G k+A   + +Gi+sve+
  KOO23071.1 277 ELTKVHGVGCKIASDWYAKGITSVEA 302
                 89**********************96 PP

>> DnaB_2  Replication initiation and membrane attachment
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   7.5e-05      0.17      54      71 ..     287     304 ..     286     306 .. 0.91
   2 ?   -3.6   0.0       4.5     1e+04      30      41 ..     391     402 ..     383     408 .. 0.64
   3 ?    0.4   0.0      0.24   5.5e+02      36      64 ..     462     493 ..     451     497 .. 0.73

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 7.5e-05
                 HHHHHHHHHT---XXXXX CS
      DnaB_2  54 kilknWaekgikTveqae 71 
                 ki+++W+ kgi++ve a 
  KOO23071.1 287 KIASDWYAKGITSVEAAV 304
                 8**************985 PP

  == domain 2  score: -3.6 bits;  conditional E-value: 4.5
                 HHHHHHHHHHHH CS
      DnaB_2  30 spevilllleya 41 
                 ++ +i+  ley 
  KOO23071.1 391 DEGLIEQILEYM 402
                 567777777775 PP

  == domain 3  score: 0.4 bits;  conditional E-value: 0.24
                 HHHHHHH.HH.T--SH.HHHHHHHHHHHHHT- CS
      DnaB_2  36 llleyav.ek.gkrnl.rYiekilknWaekgi 64 
                 ++l y + +    r++ +Y ++  ++ +++gi
  KOO23071.1 462 YALLYFTgSDhFNRSMrHYAKTLGYSLSDHGI 493
                 566666644456667845************99 PP

>> RNA_pol_A_CTD  Bacterial RNA polymerase, alpha chain C terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   5.2e-05      0.12      44      66 ..     234     256 ..     219     257 .. 0.85

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 5.2e-05
                    HHHHTTSSS-SSHHHHHHHHHHH CS
  RNA_pol_A_CTD  44 eeeLlkikNlGkKSleEIkekLe 66 
                     ++Ll+++ +G+KS++ I e L+
     KOO23071.1 234 AKQLLSVRSFGQKSVDKIAELLA 256
                    579****************9986 PP

>> HHH_3  Helix-hairpin-helix motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   0.0   0.00053       1.2      31      63 ..     222     254 ..     216     256 .. 0.83
   2 ?    0.2   0.0       0.4   8.9e+02      14      27 ..     276     289 ..     273     291 .. 0.77

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 0.00053
       HHH_3  31 vayReknGpfksreeLlkvkglgpktfeqlagf 63 
                  + R+    +++ ++Ll+v+ +g+k ++++a+ 
  KOO23071.1 222 KKLRDLTWEVTDAKQLLSVRSFGQKSVDKIAEL 254
                 566777778999******************976 PP

  == domain 2  score: 0.2 bits;  conditional E-value: 0.4
       HHH_3  14 eeLqklpGlgpklA 27 
                 +eL+k++G+g k+A
  KOO23071.1 276 AELTKVHGVGCKIA 289
                 68888888887777 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (551 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       457  (0.0254894); expected 358.6 (0.02)
Passed bias filter:                      375  (0.0209158); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.55u 0.27s 00:00:00.82 Elapsed: 00:00:00.43
# Mc/sec: 3877.70
//
Query:       KOO23072.1  [L=213]
Description: 50s ribosomal protein l4 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    7.7e-46  156.2   1.4    9.2e-46  156.0   1.4    1.0  1  Ribosomal_L4  Ribosomal protein L4/L1 family


Domain annotation for each model (and alignments):
>> Ribosomal_L4  Ribosomal protein L4/L1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  156.0   1.4   5.1e-50   9.2e-46      12     192 .]      26     208 ..      19     208 .. 0.94

  Alignments for each domain:
  == domain 1  score: 156.0 bits;  conditional E-value: 5.1e-50
                   --HHHHHHHHHHHHHSS-EE------TTTSS---S-SS-SSSSSS---S-TTSTTSTT---SS---S.EEHHHHHHHHHHHHHHHHHHHHHHHTT-E CS
  Ribosomal_L4  12 irrdlihravvaylanrrqgtastkarsevsgsgrklwkQKGtGrARvgsirspiargGgvahgpkperdystklnkKvrrlAlrsaLsakakqgll 108
                   +   +++r vva++an r  ta+ k+rsevsg+grk++ QKG+GrAR gs rsp+++gGg+++gp+     +t +nkK+ +lA+ +aL   +   ++
    KOO23072.1  26 AAAYVVQRKVVAEQANMRLWTARAKTRSEVSGGGRKPYAQKGSGRARRGSSRSPLLVGGGKTFGPRQRIGLKTMMNKKEAKLAISTALMGAVP--RM 120
                   566799************************************************************9889******************98765..58 PP

                   EEES---..-SS--HHHHHHHHHHTT-...TTSSEEEEESSSSCHHHHHHTT-TTEEEEESTT--CHHHHHSSEEEEEHHHHHHHHHH CS
  Ribosomal_L4 109 lvvdnle.pleesktkelvellkklgl...ksksvLivvsekdenlvlaarnlpgvevieveslnvydllkadkvvitksavekleek 192
                   +v+ ++e ++  +kt+ ++++l++l++   ++++++++++e  en +l+arn+p +++ ++++lnv+d+lka+k++++k+a+++l e+
    KOO23072.1 121 TVLADFEtNFAAPKTQVMKAFLDRLEVnteEEEGTMMIIKERHENTYLSARNIPYLNLRTLDNLNVRDILKAKKLFVSKGALDTLHER 208
                   888899888***************999888888999999999******************************************9985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (213 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       405  (0.0225891); expected 358.6 (0.02)
Passed bias filter:                      304  (0.0169558); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.24s 00:00:00.65 Elapsed: 00:00:00.41
# Mc/sec: 1576.71
//
Query:       KOO23073.1  [L=271]
Description: methyltransferase small [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.9e-12   47.1   0.0    7.4e-12   45.1   0.0    1.9  2  MTS              Methyltransferase small domain
    5.1e-10   39.2   0.0    8.3e-10   38.5   0.0    1.2  1  PrmA             Ribosomal protein L11 methyltransferase (Prm
    6.1e-08   32.5   0.0    9.7e-08   31.9   0.0    1.2  1  Cons_hypoth95    Conserved hypothetical protein 95
    2.7e-06   28.0   0.1    6.9e-06   26.7   0.0    1.7  2  Methyltransf_25  Methyltransferase domain
    1.3e-05   25.1   0.0      2e-05   24.5   0.0    1.2  1  Met_10           Met-10+ like-protein
    0.00019   21.3   0.0     0.0015   18.4   0.0    2.4  1  Methyltransf_23  Methyltransferase domain
    0.00021   21.9   0.4    0.00045   20.8   0.0    1.7  1  Methyltransf_11  Methyltransferase domain
     0.0003   20.1   0.0    0.00042   19.6   0.0    1.2  1  TRM              N2,N2-dimethylguanosine tRNA methyltransfera
  ------ inclusion threshold ------
      0.015   15.0   0.0      0.025   14.3   0.0    1.2  1  Methyltransf_16  Lysine methyltransferase
      0.019   14.8   0.0      0.026   14.3   0.0    1.3  1  Methyltransf_31  Methyltransferase domain
      0.029   13.9   0.0      0.045   13.3   0.0    1.2  1  Methyltransf_15  RNA cap guanine-N2 methyltransferase


Domain annotation for each model (and alignments):
>> MTS  Methyltransferase small domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.1   0.0   4.6e-15   7.4e-12      27     111 ..      35     121 ..      26     133 .. 0.86
   2 ?   -1.4   0.0      0.89   1.5e+03     127     140 ..     161     174 ..     134     182 .. 0.79

  Alignments for each domain:
  == domain 1  score: 45.1 bits;  conditional E-value: 4.6e-15
                 CHCC.TCSEEEEET-TTSHHHHHHHHHTTC.EEEEEESBHHHHHHHHHHHHHTTGC..EEEEE-STTTTSTTS-EEEEEE---STTTC CS
         MTS  27 lpke.lsgkvlDlGcGaGvlgaalakespeaevtlvdvdarAlesakenleankle..vevvasdvleeveekkfdlivsNPPfhagk 111
                 lp + +  +vlD+++G G+ ++++a++   a+v ++d++arAl++   n + n+l+  v+v + ++++ +  + fd+iv NPPf a  
  KOO23073.1  35 LPPSlTGMRVLDVCSGSGIQALTAAAH-GAADVLATDISARALRFVCFNTALNALDdvVRVAEGSCYQPARGEVFDVIVANPPFVAVP 121
                 444446678*********999988885.5569****************************************************8765 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 0.89
                 HHEEEEEEEEEEEE CS
         MTS 127 eaLkegGeLliVan 140
                  +L++gG Ll+Va+
  KOO23073.1 161 GILAPGGCLLLVAQ 174
                 47999999999987 PP

>> PrmA  Ribosomal protein L11 methyltransferase (PrmA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.5   0.0   5.1e-13   8.3e-10     161     233 ..      40     114 ..      28     119 .. 0.88

  Alignments for each domain:
  == domain 1  score: 38.5 bits;  conditional E-value: 5.1e-13
        PrmA 161 egeevlDvGtGSGiLaiaaakLgakkvvavDiDevAvkvakeNaelNkveaklevalseellk...eekadvivaN 233
                 +g +vlDv  GSGi a+ aa  ga++v+a+Di   A++    N +lN +++ ++va +++  +    e +dvivaN
  KOO23073.1  40 TGMRVLDVCSGSGIQALTAAAHGAADVLATDISARALRFVCFNTALNALDDVVRVA-EGSCYQparGEVFDVIVAN 114
                 5679***********************************************99984.4444433446889*****9 PP

>> Cons_hypoth95  Conserved hypothetical protein 95
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.9   0.0   5.9e-11   9.7e-08      38     126 ..      37     120 ..      31     133 .. 0.85

  Alignments for each domain:
  == domain 1  score: 31.9 bits;  conditional E-value: 5.9e-11
                    CCHCC-EEEETT-TTSHHHHHHHHTT-SEEEEEES-HHHHHHHHHHHCCCT--TTTEEEEES-HHHHCTS--SS-EEEEEEE--SSSTT CS
  Cons_hypoth95  38 aeiegarvLDlfaGsGalglEAlSRgakkavlvekdkeavkilkenleelkleeetaelkedaleallklakkkeefdivflDPPyake 126
                    + ++g rvLD+++GsG  +l A+  ga+ +++ + +++a++ +  n +   l++    +++ a+ ++ +  +++e+fd++  +PP+ ++
     KOO23073.1  37 PSLTGMRVLDVCSGSGIQALTAAAHGAADVLATDISARALRFVCFNTALNALDD----VVRVAEGSCYQP-ARGEVFDVIVANPPFVAV 120
                    668999****************************************99888665....555555666555.6889***********765 PP

>> Methyltransf_25  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.7   0.0   4.2e-09   6.9e-06       1      84 [.      44     127 ..      44     133 .. 0.83
   2 ?   -2.7   0.0       6.2     1e+04       3       6 ..     227     230 ..     197     254 .. 0.61

  Alignments for each domain:
  == domain 1  score: 26.7 bits;  conditional E-value: 4.2e-09
                      EEEET-TTSHHHHHHHCTSTSSEEEEEESSHHHHHHHHHHHHHTTT..TEEEEESBCCGBSSSTTTEEEEEEEST.GGGSSHHHHHH CS
  Methyltransf_25   1 vLdlGcGtGrltlalakrlgkakvtgvDiseemleaareraeeegl..nvefvqgdaedlpfedgsfDlvvssga.lhhlsdedlek 84 
                      vLd++ G+G  +l +a++ g+a+v+++Dis+++l+ +  + + + l   v++ +g++ + p   + fD++v++   +  +++ ++e+
       KOO23073.1  44 VLDVCSGSGIQALTAAAH-GAADVLATDISARALRFVCFNTALNALddVVRVAEGSCYQ-PARGEVFDVIVAN-PpFVAVPPTEVEA 127
                      9****************9.69***************99888777776677777777766.56788*******5.5598888887665 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 6.2
                      EET- CS
  Methyltransf_25   3 dlGc 6  
                      d Gc
       KOO23073.1 227 DYGC 230
                      2233 PP

>> Met_10  Met-10+ like-protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.5   0.0   1.2e-08     2e-05     101     177 ..      41     116 ..      37     122 .. 0.92

  Alignments for each domain:
  == domain 1  score: 24.5 bits;  conditional E-value: 1.2e-08
                 T-EEEETT-TTTCCHHHCCHHTTSSEEEEEES-HHHHHHHHHHHHHTT-TTCEEEEES-GGG---TT-EEEEEE--T CS
      Met_10 101 gevVvdvfAGiGpfaipiakyskakrvlaidlnPesvkylkeniklNkvekvvkpileDgrevireqladrvvmnlp 177
                 g +V+dv  G G  a+++a ++ a  vla d+  ++ ++++ n +lN +++vv++ ++ + + +r +++d +v n p
  KOO23073.1  41 GMRVLDVCSGSGIQALTAAAHGAAD-VLATDISARALRFVCFNTALNALDDVVRVAEGSCYQPARGEVFDVIVANPP 116
                 678*****************99887.********************************9999999999999998876 PP

>> Methyltransf_23  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.4   0.0   9.4e-07    0.0015      18      89 ..      36     114 ..      16     245 .. 0.76

  Alignments for each domain:
  == domain 1  score: 18.4 bits;  conditional E-value: 9.4e-07
  Methyltransf_23  18 pklraggrvLdiGcGtGillevlrengf.svtgvDlspeaveiaekakkaqkdqfdeq.............eaaepqg..kfdlIvlr 89 
                      p   +g+rvLd+  G+Gi +  ++++g+ +v + D+s +           ++++f+               +  +p++   fd+Iv++
       KOO23073.1  36 PPSLTGMRVLDVCSGSGIQALTAAAHGAaDVLATDISAR---------ALRFVCFNTAlnalddvvrvaegSCYQPARgeVFDVIVAN 114
                      5578999*******************999*******965.........4445555222222222222222211123335689999887 PP

>> Methyltransf_11  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.8   0.0   2.8e-07   0.00045       1      68 [.      45     114 ..      45     131 .. 0.86

  Alignments for each domain:
  == domain 1  score: 20.8 bits;  conditional E-value: 2.8e-07
                      EEET-TTSHHHHHHHHTT.SEEEEEES-HHHHHHHHHHCCHHT-..EEEETTEECCCTSS-TT-EEEEEEE CS
  Methyltransf_11   1 LdvGcGtGrlaealakrg.arvvgvDlskemlklakekaseegl..kvefvvadaeklpfednsfDlvvss 68 
                      Ldv +G+G+ a   a +g a+v+++D+s+++l+ +  ++  + l   v++ ++++ + p + + fD++v++
       KOO23073.1  45 LDVCSGSGIQALTAAAHGaADVLATDISARALRFVCFNTALNALddVVRVAEGSCYQ-PARGEVFDVIVAN 114
                      89999**********999**************9985555555556689999999999.***********97 PP

>> TRM  N2,N2-dimethylguanosine tRNA methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.6   0.0   2.6e-07   0.00042      51     124 ..      42     111 ..      11     123 .. 0.82

  Alignments for each domain:
  == domain 1  score: 19.6 bits;  conditional E-value: 2.6e-07
                 EEEEESS-TTSHHHHHHHHH-S-EEEEEEE-S-HHHHHHHHHHHHHTT--GGEEEE-S-HHHHHC--SS-EEEE CS
         TRM  51 ikvldaLsasGlRaiRfalEvpgvkevlaNDisekAvelikeNvklneveeivvineddAnvllaekkkrfdvi 124
                 ++vld  s+sG+ a+  a    g+  vla Dis +A+  +  N+ ln  +++v + e   ++   ++ + fdvi
  KOO23073.1  42 MRVLDVCSGSGIQALTAAAH--GAADVLATDISARALRFVCFNTALNALDDVVRVAE--GSCYQPARGEVFDVI 111
                 89**************9988..9****************************776665..555555677777776 PP

>> Methyltransf_16  Lysine methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   0.0   1.5e-05     0.025      45     102 ..      39      94 ..      29     112 .. 0.89

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 1.5e-05
  Methyltransf_16  45 lsklsvlELGsGtGlvGlavaellpeakviltDlee.llellkknielnknalkskvkv 102
                      l++++vl++ sG+G+  l++a++ + a+v+ tD++  +l ++  n +l  nal++ v+v
       KOO23073.1  39 LTGMRVLDVCSGSGIQALTAAAH-GAADVLATDISArALRFVCFNTAL--NALDDVVRV 94 
                      67899******************.9*********987999*******9..458887776 PP

>> Methyltransf_31  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   0.0   1.6e-05     0.026       4      84 ..      41     117 ..      38     171 .. 0.85

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 1.6e-05
  Methyltransf_31   4 glrvlDlGCGtGeltfelaeelgpkaevvGiDiseeaielArenaqklgld.nveFeqgdiee.leklledekfDlilsnevl 84 
                      g+rvlD+ +G+G  ++ +a  +   a+v   Dis++a+++   n++ + ld  v++ +g+  + +      e fD+i++n ++
       KOO23073.1  41 GMRVLDVCSGSGIQALTAA--AHGAADVLATDISARALRFVCFNTALNALDdVVRVAEGSCYQpAR----GEVFDVIVANPPF 117
                      89*************9999..556799************************888899998888444....489****999655 PP

>> Methyltransf_15  RNA cap guanine-N2 methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.0   2.8e-05     0.045       3      80 ..      43     116 ..      41     123 .. 0.88

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 2.8e-05
  Methyltransf_15   3 vilDlfsGaGGnviqfalv.fekviaieinleklacaqhNaevYgvsdkitlvlgdvfellaklklekikvdlvflSpP 80 
                       +lD++sG+G ++ + a +    v a +i+ + l  +  N+ +   +d + +  g++ +  +     ++ +d++++ pP
       KOO23073.1  43 RVLDVCSGSGIQALTAAAHgAADVLATDISARALRFVCFNTALNALDDVVRVAEGSCYQPARG----EV-FDVIVANPP 116
                      58************999985679**********************************998777....33.478888887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (271 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       357  (0.0199119); expected 358.6 (0.02)
Passed bias filter:                      262  (0.0146132); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.44u 0.26s 00:00:00.70 Elapsed: 00:00:00.42
# Mc/sec: 1941.30
//
Query:       KOO23074.1  [L=580]
Description: voltage-gated ion channel superfamily [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.5e-17   63.7  13.7    6.5e-17   61.6   5.2    2.2  2  Ion_trans    Ion transport protein
    1.3e-07   31.5   5.4    3.5e-07   30.1   5.4    1.7  1  Ion_trans_2  Ion channel


Domain annotation for each model (and alignments):
>> Ion_trans  Ion transport protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.6   5.2   7.3e-21   6.5e-17       2     118 ..      58     192 ..      57     203 .. 0.86
   2 !    7.4   1.3   0.00026       2.3     181     217 ..     210     246 ..     194     264 .. 0.83

  Alignments for each domain:
  == domain 1  score: 61.6 bits;  conditional E-value: 7.3e-21
                 HHHHHHHHHHHHHHHHHHHCCCSSSSHHHHC.HHHHHHHHHHHHHHHHHHHHHHHHHTH...............HHHHHHCHSHHHHHHHHHHHHHHHH CS
   Ion_trans   2 svfelfilllillncvflaletyfpedelek.tileilelvftaiftlemllkilalgl...............likkrYlrdpwnilDflvvlpslls 84 
                  +++ + +l i  ++++ ++e +  +  ++  ++l+i++ v ++if+++ml+ +++++                 i+ +Yl+  w++lDf+++ +s l+
  KOO23074.1  58 AYWDTVTMLAIAFTALVTPYEIAYLPMATSAtNPLFIINRVMDIIFIVDMLITFRMMYTagdgedatlwiadpmRIAVNYLKG-WFLLDFVSIAISGLD 155
                 59************************777779************************9999***********************.9*************9 PP

                 H..HHHH.HHHHHHHHHHHHGGGGGGHHHCHSHHHHH CS
   Ion_trans  85 l..vlse.esllllsvlrlfrvlrllklisrleglrt 118
                 +  v+++ ++l++l+vlr++r +rllkl++ l+  r+
  KOO23074.1 156 IvgVMEQgSNLSGLKVLRILRAFRLLKLVRLLRASRI 192
                 9774444666777777777777777777766555444 PP

  == domain 2  score: 7.4 bits;  conditional E-value: 0.00026
                 HHHHHHHHHHTTSSHHHHHHHHHHHSHHHHHHHHHHH CS
   Ion_trans 181 tallwlfrlmttegwgdilyatldekskvaliyfvif 217
                 ta++w+  ++t++g+gd+ ++++++ +++ +++++++
  KOO23074.1 210 TAVYWAAMTITSIGYGDLPATPYNAGEMWVCTTLMLL 246
                 7999**********************99999998876 PP

>> Ion_trans_2  Ion channel
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.1   5.4   3.9e-11   3.5e-07      26      78 ..     209     263 ..     201     264 .. 0.90

  Alignments for each domain:
  == domain 1  score: 30.1 bits;  conditional E-value: 3.9e-11
                  HHHHHHHHHHHTTS----S..STT-----HHHHHHHHHHHHHHHHHHHHHHHHHH CS
  Ion_trans_2  26 ldalYfsfvtltTiGYGdi..vpetdagrlftivyillGlalfalflavlgkvlt 78 
                  ++a+Y++ +t+t+iGYGd+  +p +++ +++++ ++llG ++ ++++ ++++v+ 
   KOO23074.1 209 MTAVYWAAMTITSIGYGDLpaTPYNAGEMWVCTTLMLLGGGIWGFVIGTFVSVIA 263
                  579***************977777777899********************99875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (580 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       560  (0.0312343); expected 358.6 (0.02)
Passed bias filter:                      363  (0.0202465); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.59u 0.24s 00:00:00.83 Elapsed: 00:00:00.43
# Mc/sec: 4051.72
//
Query:       KOO23075.1  [L=336]
Description: hypothetical protein Ctob_008946 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.5e-09   36.8   4.0    5.3e-09   36.2   0.6    2.1  2  Reticulon  Reticulon


Domain annotation for each model (and alignments):
>> Reticulon  Reticulon
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.2   0.6   2.9e-13   5.3e-09      18     136 ..     101     211 ..      91     216 .. 0.82
   2 ?    1.6   0.2     0.014   2.5e+02      21      83 ..     261     314 ..     248     326 .. 0.56

  Alignments for each domain:
  == domain 1  score: 36.2 bits;  conditional E-value: 2.9e-13
   Reticulon  18 gglllllllfellgysllslvsklllllllvlflwaeyagllnkskppepelelseesvreladsllellnkalselrrlalgedlklflkvalllyil 116
                 ++ ++ ll     +++ +s++s ll++ + + f ++   + + +  p+ ++  ++e++v++++ +++  +n al+  ++++ ++d+k+ l va+++ + 
  KOO23075.1 101 LAWTTYLL-----SFTSFSFLSPLLWVGVWAIFGFSA-RSAFGT--PTTKRAPFTEHDVESFVPQMVRAINLALEAYQDVIEAHDPKKALAVAVSFAVT 191
                 33333333.....456678888888888888888555.444444..5889999********************************************** PP

   Reticulon 117 silgslfslltllyigvvla 136
                 s l +++s   ll+ +v +a
  KOO23075.1 192 SQLLAYISAPLLLFAAVNVA 211
                 **************999876 PP

  == domain 2  score: 1.6 bits;  conditional E-value: 0.014
   Reticulon  21 llllllfellgysllslvsklllllllvlflwaeyagllnkskppepelelseesvreladsl 83 
                 +++  l  ++    ls+ +kl+ l +++l+l  +++g l+      pe++++ ++v++ a+++
  KOO23075.1 261 VAFAALSIWA--YCLSWSAKLVTLGFGLLAL--NASGSLSG-----PEVKYQMKQVKKTARRM 314
                 2222222222..3467777777777766666..43444443.....55555555555555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (336 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       761  (0.0424452); expected 358.6 (0.02)
Passed bias filter:                      420  (0.0234257); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.25s 00:00:00.73 Elapsed: 00:00:00.41
# Mc/sec: 2438.51
//
Query:       KOO23076.1  [L=417]
Description: hypothetical protein Ctob_008945 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
  ------ inclusion threshold ------
        1.6    8.9   9.0        8.8    6.6   0.6    3.2  3  AAA_lid_6    AAA lid domain
          6    6.9   6.4         10    6.2   2.0    2.8  2  Prefoldin_2  Prefoldin subunit


Domain annotation for each model (and alignments):
>> AAA_lid_6  AAA lid domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6   0.6   0.00098       8.8      23      44 ..      85     108 ..      67     127 .. 0.76
   2 ?    6.5   0.2    0.0011       9.4      28      47 ..     150     167 ..     149     180 .. 0.76
   3 ?   -2.2   0.1      0.55   4.9e+03      46      58 ..     299     311 ..     281     313 .. 0.62

  Alignments for each domain:
  == domain 1  score: 6.6 bits;  conditional E-value: 0.00098
   AAA_lid_6  23 ARfVRnllekairrq..adRlatt 44 
                 ARf+Rnll ++++r     Rl++t
  KOO23076.1  85 ARFARNLLRASVQRLvdKRRLVAT 108
                 9**********9997556677776 PP

  == domain 2  score: 6.5 bits;  conditional E-value: 0.0011
   AAA_lid_6  28 nllekairrqadRlattdds 47 
                 +ll++a++r+a+Rla+   +
  KOO23076.1 150 QLLDEAEARHAERLAER--R 167
                 689************94..3 PP

  == domain 3  score: -2.2 bits;  conditional E-value: 0.55
   AAA_lid_6  46 dseltredlmtLt 58 
                 +   tre+l+ L+
  KOO23076.1 299 ELGRTREELQALR 311
                 3456888888876 PP

>> Prefoldin_2  Prefoldin subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.3   0.1     0.035   3.1e+02      63      99 ..      95     131 ..      80     138 .. 0.65
   2 ?    6.2   2.0    0.0011        10      11      94 ..     227     309 ..     224     317 .. 0.71

  Alignments for each domain:
  == domain 1  score: 1.3 bits;  conditional E-value: 0.035
                  HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
  Prefoldin_2  63 vkeeLeerketlekeiktlekqleklekeleelkeel 99 
                    ++L ++   + +e++++e++  +l ++l+ l ++ 
   KOO23076.1  95 SVQRLVDKRRLVATELRRMENERVSLSTQLALLHQQA 131
                  4556666666667777777777777777776666555 PP

  == domain 2  score: 6.2 bits;  conditional E-value: 0.0011
                  HHHHHHHHHHHHHHHHHHHHHHHHH..HHHHHS-TT--EEEEETTEEEEE-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
  Prefoldin_2  11 qqqlqqlaqqikqletqlkelelvl..eelelldedtkvyklvGdvlvkqdkeevkeeLeerketlekeiktlekqleklekelee 94 
                   ++  +l+ q+  letql+ + +++      l++ + +v k  G +lv  +++ + e+  +++et++k      ++l + ++el+ 
   KOO23076.1 227 AERYNALQRQVFVLETQLQQHRDAIlqRDAALAEAESQVLKCRGLALVADERAVAAERRAAEAETMSKA---TRSELGRTREELQA 309
                  567788899999999999999998722456677777999999999999999999887766666666654...44455555555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (417 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1111  (0.0619666); expected 358.6 (0.02)
Passed bias filter:                      516  (0.0287802); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.58u 0.26s 00:00:00.84 Elapsed: 00:00:00.42
# Mc/sec: 2947.18
//
Query:       KOO23077.1  [L=287]
Description: hypothetical protein Ctob_008944 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.1e-28  100.7   0.0    1.4e-28  100.3   0.0    1.1  1  Bmt2             25S rRNA (adenine(2142)-N(1))-methyltransfer
  ------ inclusion threshold ------
       0.04   13.8   0.0      0.062   13.1   0.0    1.3  1  Methyltransf_23  Methyltransferase domain
      0.045   14.5   0.0       0.12   13.1   0.0    1.7  2  Methyltransf_12  Methyltransferase domain


Domain annotation for each model (and alignments):
>> Bmt2  25S rRNA (adenine(2142)-N(1))-methyltransferase, Bmt2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  100.3   0.0   2.3e-32   1.4e-28       6     185 ..      59     231 ..      54     273 .. 0.83

  Alignments for each domain:
  == domain 1  score: 100.3 bits;  conditional E-value: 2.3e-32
        Bmt2   6 eiealGGleaYQlaSklgqskerggdsskvlvewlkekleelkleekklrlLevGalstknaiskvklldvtrIDLnsqekgilkqdFlerpl.....p 99 
                 ++ea GG++aYQ+aS+l ++ +    +s++++ +l+++ + +      +r+Le+Ga++t+      + l+v++IDL+s e+ i+  dFl+        p
  KOO23077.1  59 DLEAMGGVKAYQAASALNTALNP---TSRWVMRALRQSSRASPPP---MRVLEIGAVNTQLL--DAEGLSVRAIDLHSLEPRIETCDFLSLAHggtvdP 149
                 7899*************999886...**********998888877...9********77765..456999*******************9754222222 PP

        Bmt2 100 .kkeeekFdiislSLVlNfvpdaakRGemlkrvtkfLkpkkkaslsslflvLPlpCvtnSrylteerlrailsslGfelvkeketkk 185
                  +   + +d + +S+VlN+vp+ +kR +ml  + + L+  ++      f+ +P +C+t+S  l+e  + + l+s+G++++ e ++ k
  KOO23077.1 150 aTGRVQLYDAVVCSMVLNCVPNERKRSDMLVGIRSQLRRGGR-----AFVTIPRTCLTHSFTLSEPIFVDALASVGLRCLDEATAAK 231
                 1456799********************************999.....9*******************************99876543 PP

>> Methyltransf_23  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.0     1e-05     0.062      18     120 ..      95     197 ..      71     230 .. 0.73

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 1e-05
  Methyltransf_23  18 pklraggrvLdiGcGtGillevlrengfsvtgvDlspeaveiae...kakkaqkdqfdeqeaaepqg....kfdlIvlrevlehvpd...ppel 101
                         ++++rvL+iG+    ++++l ++g sv ++Dl + + +++e     + a+   +      +p+      +d +v+++vl+ vp+       
       KOO23077.1  95 RASPPPMRVLEIGA---VNTQLLDAEGLSVRAIDLHS-LEPRIEtcdFLSLAHGGTV------DPATgrvqLYDAVVCSMVLNCVPNerkRSDM 178
                      3367889*****98...56688889**********64.5555545653344444444......33334677***************95544578 PP

  Methyltransf_23 102 lrqiatllkpgGylllsep 120
                      l  i++ l+ gG+++++ p
       KOO23077.1 179 LVGIRSQLRRGGRAFVTIP 197
                      8889999999999999887 PP

>> Methyltransf_12  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.0       1.4   8.6e+03      23      45 ..      35      57 ..      26      64 .. 0.70
   2 ?   13.1   0.0   2.1e-05      0.12      48      98 ..     128     191 ..     106     192 .. 0.76

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 1.4
  Methyltransf_12 23 ytgvDispsaiedakeklakren 45
                       + Di +++ ++++e+ ++ ++
       KOO23077.1 35 TQYHDITRRMAAATSEEARAACR 57
                     44678999999777777776655 PP

  == domain 2  score: 13.1 bits;  conditional E-value: 2.1e-05
  Methyltransf_12  48 nnnvelealdlldldgg..........ssfDlvvasnvlhhl...kdirevldnirklLkpgGr 98 
                        + ++e++d l+l+ g          + +D+vv+s vl+++   +++ ++l  ir+ L+ gGr
       KOO23077.1 128 SLEPRIETCDFLSLAHGgtvdpatgrvQLYDAVVCSMVLNCVpneRKRSDMLVGIRSQLRRGGR 191
                      44455555555555555777777888889**************977777*************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (287 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       435  (0.0242624); expected 358.6 (0.02)
Passed bias filter:                      318  (0.0177366); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.43u 0.25s 00:00:00.68 Elapsed: 00:00:00.41
# Mc/sec: 2115.62
//
Query:       KOO23078.1  [L=305]
Description: prolyl-tRNA synthetase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.1e-12   47.0   0.0    4.1e-12   46.1   0.0    1.5  1  HGTP_anticodon  Anticodon binding domain
  ------ inclusion threshold ------
      0.095   12.4   0.2       0.24   11.1   0.1    1.8  2  Siva            Cd27 binding protein (Siva)


Domain annotation for each model (and alignments):
>> HGTP_anticodon  Anticodon binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.1   0.0   4.6e-16   4.1e-12       1      93 [.      89     192 ..      89     193 .. 0.90

  Alignments for each domain:
  == domain 1  score: 46.1 bits;  conditional E-value: 4.6e-16
                     SEEEEESSSS.....HHHHHHHHHHHHHHHHTTTSEEEEES.SSSTHHHHHHHHHHTT-SEEEEE-HHHHHHTEEEEEET.....TTCEEEEEET CS
  HGTP_anticodon   1 qvvviplnek.....aeeleeyakklaeeLraagirveldd.snesigkkireadllgipfavvvGekelekgtvtvrdr.....dtreqervsl 84 
                     +vvv+p+  k       +++  ++++ ++L+   ++v ld   ++++g+k+++++ +g+ ++v++G++e+e+g++tv +         +++rvs+
      KOO23078.1  89 DVVVVPIYWKgeakqMARVLLACSDVEKALETSKWKVMLDSgHKYTPGQKFAHWEHKGVKLRVEIGPREAERGECTVARTfapgePALRKQRVSV 183
                     699999999988777445779********************************************************99988875444779**** PP

                     THHHHHHHH CS
  HGTP_anticodon  85 delveklke 93 
                     d+l+++l e
      KOO23078.1 184 DSLLDVLAE 192
                     *****9987 PP

>> Siva  Cd27 binding protein (Siva)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.1   2.7e-05      0.24       1      56 [.       1      56 [.       1     121 [. 0.81
   2 ?   -2.7   0.0      0.44   3.9e+03      13      30 ..     146     163 ..     138     167 .. 0.80

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 2.7e-05
        Siva  1 mPkrscPfadvaplqlkvhvsekelskGvfaekysrevfektkqllfkGakavldk 56
                m kr +P ++ +p  l+ + +++  ++  +a + + evfe t++  f   k +  +
  KOO23078.1  1 MVKRKVPDSELTPEELRRREAQRAQQQAAVAARERGEVFESTRRTTFPKRKPLEAR 56
                88******************************************999877666554 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 0.44
        Siva  13 plqlkvhvsekelskGvf 30 
                  ++l+v+++++e  +G +
  KOO23078.1 146 GVKLRVEIGPREAERGEC 163
                 568999999999999866 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (305 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       908  (0.0506442); expected 358.6 (0.02)
Passed bias filter:                      388  (0.0216409); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.49u 0.22s 00:00:00.71 Elapsed: 00:00:00.41
# Mc/sec: 2220.71
//
Query:       KOO23079.1  [L=220]
Description: hypothetical protein Ctob_009349 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
  ------ inclusion threshold ------
       0.01   15.8   0.0        2.7    8.0   0.0    2.5  2  Atx10homo_assoc  Spinocerebellar ataxia type 10 protein domai
      0.041   14.3   4.1      0.071   13.6   4.1    1.4  1  MFMR_assoc       Disordered region downstream of MFMR
      0.066   13.3   0.1         10    6.3   0.0    3.2  4  Arm              Armadillo/beta-catenin-like repeat
          1    8.7   9.1        1.5    8.1   9.1    1.2  1  Rtf2             Rtf2 RING-finger
        5.2    5.7   5.4        6.4    5.4   5.4    1.1  1  Presenilin       Presenilin


Domain annotation for each model (and alignments):
>> Atx10homo_assoc  Spinocerebellar ataxia type 10 protein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.0   0.0   0.00077       2.7       4      35 ..      11      42 ..      10      58 .. 0.81
   2 ?    5.2   0.0    0.0059        21      45      67 ..      77      99 ..      65     119 .. 0.87

  Alignments for each domain:
  == domain 1  score: 8.0 bits;  conditional E-value: 0.00077
  Atx10homo_assoc  4 elvrllgnlvyknkevqdkvreldgleliLsq 35
                     e ++ ++ l+ +nk ++d +r++++++l+   
       KOO23079.1 11 EAIEAIAVLTSENKFACDLFRKHGAVTLLAAY 42
                     5799*********************9987554 PP

  == domain 2  score: 5.2 bits;  conditional E-value: 0.0059
  Atx10homo_assoc 45 irewailairnLlegneenqelv 67
                     i+  a+la+rn+  +++en   +
       KOO23079.1 77 IKSKAVLALRNIATSSPENLVHI 99
                     7899***********99996555 PP

>> MFMR_assoc  Disordered region downstream of MFMR
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   4.1     2e-05     0.071      32      93 ..     119     184 ..     111     203 .. 0.61

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 2e-05
  MFMR_assoc  32 sangalsqsgesesegssegSDansqndsqrkkkrsqes.....tsqnggdakasqngaekap..qtkv 93 
                  a++a sq   + s  ss++SD+ ++ ++  kk+rs e      +   g+ +++ +n +++    ++k+
  KOO23079.1 119 EADNASSQ---GSSRDSSNDSDKGTAKKEGAKKHRSAEEkerrrAERKGKLNESLKNAMQQDMldRKKL 184
                 56777777...7788899999999999999999999988444444444444444444444433333333 PP

>> Arm  Armadillo/beta-catenin-like repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.0       1.2   4.4e+03       7      16 ..       3      12 ..       2      18 .. 0.57
   2 ?   -2.4   0.0       1.6   5.6e+03       9      23 ..      31      45 ..      27      48 .. 0.73
   3 ?    3.0   0.0     0.032   1.1e+02      27      40 ..      76      89 ..      74      90 .. 0.85
   4 ?    6.3   0.0    0.0029        10      12      24 ..     104     117 ..      92     122 .. 0.81

  Alignments for each domain:
  == domain 1  score: -2.0 bits;  conditional E-value: 1.2
                HHHHTTHHHH CS
         Arm  7 avieaGavpp 16
                a+ ++G++++
  KOO23079.1  3 ALLKSGGLEA 12
                3455555554 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 1.6
                HHTTHHHHHHHHTTT CS
         Arm  9 ieaGavppLvrLLss 23
                +++Gav  L + ++s
  KOO23079.1 31 RKHGAVTLLAAYINS 45
                688999888776665 PP

  == domain 3  score: 3.0 bits;  conditional E-value: 0.032
                HHHHHHHHHHHHHT CS
         Arm 27 evqeeAawALsNLa 40
                +++  A+ AL+N+a
  KOO23079.1 76 TIKSKAVLALRNIA 89
                6788899******8 PP

  == domain 4  score: 6.3 bits;  conditional E-value: 0.0029
                 THHHHHHHHTT.TS CS
         Arm  12 GavppLvrLLs.se 24 
                 G++p+Lv+L++  +
  KOO23079.1 104 GVIPQLVQLMTrMQ 117
                 89*******98644 PP

>> Rtf2  Rtf2 RING-finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.1   9.1   0.00043       1.5     174     249 ..     108     183 ..      88     197 .. 0.72

  Alignments for each domain:
  == domain 1  score: 8.1 bits;  conditional E-value: 0.00043
        Rtf2 174 elellkarleeekakkkkkkkakkkkkakakgskaeaeaaskssseasesskagkkkekkkekkkrslaeknekse 249
                 +l +l++r+++e+ ++ ++ ++++++++++kg+++++ a++++s+e++e   a++k + +++ k+ ++++  ++++
  KOO23079.1 108 QLVQLMTRMQDEADNASSQGSSRDSSNDSDKGTAKKEGAKKHRSAEEKERRRAERKGKLNESLKNAMQQDMLDRKK 183
                 78899**********9999999999999999999888888887777775555555555555555555555444443 PP

>> Presenilin  Presenilin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.4   5.4    0.0018       6.4     236     294 ..     118     178 ..      94     214 .. 0.35

  Alignments for each domain:
  == domain 1  score: 5.4 bits;  conditional E-value: 0.0018
  Presenilin 236 eeeeeaekkk..eeasesskeeeseeesseksaqsseseeeseeesseaessaeesseeke 294
                 +e+++a+++   + +s++s++ ++++e ++k+++++e+e+++ e++ + ++s ++  +++ 
  KOO23079.1 118 DEADNASSQGssRDSSNDSDKGTAKKEGAKKHRSAEEKERRRAERKGKLNESLKNAMQQDM 178
                 1111111111001111111111111111222222222222222222222222111111111 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (220 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1673  (0.0933125); expected 358.6 (0.02)
Passed bias filter:                      691  (0.0385409); expected 358.6 (0.02)
Passed Vit filter:                       100  (0.00557756); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.54u 0.26s 00:00:00.80 Elapsed: 00:00:00.44
# Mc/sec: 1492.31
//
Query:       KOO23080.1  [L=463]
Description: serine threonine-protein kinase ctr1 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    5.7e-33  114.4   0.0    9.8e-33  113.6   0.0    1.3  1  Pkinase        Protein kinase domain
    2.3e-30  105.7   0.0    3.8e-30  105.1   0.0    1.2  1  Pkinase_Tyr    Protein tyrosine kinase
    2.6e-18   66.8   0.0    4.9e-18   65.9   0.0    1.3  1  Pro_isomerase  Cyclophilin type peptidyl-prolyl cis-trans iso
    0.00067   19.7   0.2     0.0032   17.4   0.1    1.8  2  APH            Phosphotransferase enzyme family


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  113.6   0.0   2.2e-36   9.8e-33       4     258 ..     173     446 ..     170     448 .. 0.83

  Alignments for each domain:
  == domain 1  score: 113.6 bits;  conditional E-value: 2.2e-36
                 EEEEEEESSEEEEEEEETTTTEEEEEEEEECHCHCHHHH.HHHHHHHHHHHHHSCTTB--EEEEEEE..........SSEEEEEEE--TTEBHHHHHH. CS
     Pkinase   4 leklGeGsfGkVykaveketgkivAvKkikkekakkkke.kkvlrEikilkklkhpnivrlyevfee..........kdelylvleyveggeladlle. 90 
                 ++ lG+G+f + +  +   +gk v+vK++k e++++ +  k++l+E +++ +++h+ni+  +    +          + e +l  e+ +          
  KOO23080.1 173 MKYLGSGEFCEALLSK--LDGKNVVVKMLKLEQQNNPTAvKDLLSEGALMLTMRHKNILAGIAHGLDdhglpfvvieQLESVLSAELPKSA------Ds 263
                 5789*******99888..8**************9998889******************997766665344444444333344444444433......14 PP

                 ........HHSS--HHHHHHHHHHHHHHHHHHHHTT.........EE-SS-SGGGEEEETTTEEEE-SGTTSEESSSSCS.........BCTTTSCGGG CS
     Pkinase  91 ........rkgslseeeakkiakqilegleylHskg.........iiHrDlKpeNiLidekgelKitDFGlakelesssk.........ltsfvgtseY 163
                         + ++ ++++a ++  +++e+l+y+H+++         i+HrDlKp+Ni +  +g l + DFGlak ++ +++         lt  +g+ +Y
  KOO23080.1 264 vpfwtrsaQVKKWPMTRALRVGMELAEALHYCHAECrlnafpgcrILHRDLKPNNIGFLPDGRLALFDFGLAKLWRVKEDdldgnetrqLTGNTGSLRY 362
                 44444443556677778999999**********9999999****************8888****************99999*******99********* PP

                 S-HHHHTTSCBSHHHHHHHHHHHHHHHHHSS-STTTSSHHHHHHHHHHTHHHHHHHCTSHH...HHHTTS-HHHHHHHHHHT-SSGCCSTTHHHH CS
     Pkinase 164 lAPEvlkeneyskkvDvWslGvilyelltgkppfsgekgkekvekeldqlekilkilgetkeklpeaseiseeakdllkkllkkdpkkRltaeel 258
                 +APEv  +++ys+k+ v++lG +l+++ + ++pf++ + +      +++      +  + +e  + ++ +++e+ +ll++++k d+ +R+ ++e+
  KOO23080.1 363 MAPEVALSKPYSHKAEVFALGTLLWQMASHENPFADCDVSG----FYRR------V-CTLHERPKIPKGFPPELAELLTRCWKTDQAERPEMAEI 446
                 ***********************************333333....3333......2.234667888999*********************99987 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  105.1   0.0   8.4e-34   3.8e-30       5     258 ..     174     449 ..     171     450 .. 0.85

  Alignments for each domain:
  == domain 1  score: 105.1 bits;  conditional E-value: 8.4e-34
                  EEEEEESSEEEEEEEEETTTTSSEEEEEEEEES..TTSSHHHHHHHHHHHHHHHTS-BTTB--EEEEEE.SSSSEEEEEE--TTEBHHHHHHHT.... CS
  Pkinase_Tyr   5 kklGeGafGkVvegtlkgekekkevkVavKtlk..eeateeekeelleeakimkklkhpnivkllgvct.keepllivteyvkgGdLlkfLrkk.... 95 
                  k lG+G+f +    +l+        +V+vK+lk  ++++ +  ++ll+e ++m +++h+ni++ ++  + +++  ++v+e +++  L+  L k+    
   KOO23080.1 174 KYLGSGEFCEALLSKLD------GKNVVVKMLKleQQNNPTAVKDLLSEGALMLTMRHKNILAGIAHGLdDHGLPFVVIEQLES-VLSAELPKSadsv 264
                  679*****999999999......889*****963255666679*******************9999998445556777776654.6888888889*** PP

                  .......CTTTSBHHHHHHHHHHHHHHHHHHHHTT.........EEEST-SGGGEEEEETTEEEE-STTTHEETTTSSEE......EETTSSTSGGGG CS
  Pkinase_Tyr  96 .......ekekltlkdllsfalqvAkGmeyLeskk.........lvHrdlaarNvLlsenkvvkisDfGLardiekddey......vkkeeaklpvkW 171
                         + +k  +++ l++ +++A++++y +++          ++Hrdl   N+    +    + DfGLa+    +++       ++ ++++ ++++
   KOO23080.1 265 pfwtrsaQVKKWPMTRALRVGMELAEALHYCHAECrlnafpgcrILHRDLKPNNIGFLPDGRLALFDFGLAKLWRVKEDDldgnetRQLTGNTGSLRY 362
                  *****99999999*****************997633334444449**********9999************987433332234443666777899*** PP

                  S-HHHHHHSEEEHHHHHHHHHHHHHHHHTTSSGTTTTSHHHHHHHHH.HTTEES-BBTTSBHHHHHHHHHHT-SSGGGS--HHHHHHH CS
  Pkinase_Tyr 172 mapEslkekkftsksDvWsfGvllwEiftlgespypglkneevlekl.kegkrlekpekcpeelyelmkkcweedpeeRptfselvek 258
                  mapE+  +k +++k+ v++ G+llw +++  e+p+++++ + +++++ + ++r + p+  p+el+el+++cw++d++eRp+++e++  
   KOO23080.1 363 MAPEVALSKPYSHKAEVFALGTLLWQMAS-HENPFADCDVSGFYRRVcTLHERPKIPKGFPPELAELLTRCWKTDQAERPEMAEIIVI 449
                  ****************************9.8****************778999*******************************9865 PP

>> Pro_isomerase  Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.9   0.0   1.1e-21   4.9e-18       3     144 ..       8     143 ..       7     153 .. 0.81

  Alignments for each domain:
  == domain 1  score: 65.9 bits;  conditional E-value: 1.1e-21
  Pro_isomerase   3 dietsskGrivieLfadkaPktvenFlklvkegfYdgttFhRvikgfmvqgGdptgktsageqekkggesiraipdEit.sklkhkrGalamartg 97 
                    +++t+ +G+i+++  +d+aP+t   + kl+k + Ydg +F+R   +f++q G    + ++ e    g+    ++++ ++ + ++++rG+ a a+  
     KOO23080.1   8 TLKTE-LGDITLRFRKDSAPETTVYIEKLIKHKLYDGASFYR--SDFVIQCGTHGLNRANPE----GDL---KVNETHQhKIVSNTRGTAAIAHW- 92 
                    67895.************************************..68*******433333222....332...2233333356889*********9. PP

  Pro_isomerase  98 kepnsagsqFfItlkeaphldg...kytvFGkVv.eGmdvvekiekvetde 144
                    + p+ ++s+FfI+l+++ hld    +y+vF +V   ++++v++i+++ +++
     KOO23080.1  93 DVPDCGNSEFFINLSANAHLDSaygGYCVFAEVDtVSFKIVDAIADAIANQ 143
                    68*******************988899******989*********976555 PP

>> APH  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.4   0.0       0.2   8.8e+02      29      81 ..     206     253 ..     188     300 .. 0.76
   2 !   17.4   0.1   7.2e-07    0.0032     166     197 ..     307     336 ..     245     338 .. 0.62

  Alignments for each domain:
  == domain 1  score: -0.4 bits;  conditional E-value: 0.2
                 -TTS-HHHHHHHHHHHHHHHHTT-B--B-CTTBS-EEETTEEEEEEE----EE CS
         APH  29 pparaaeeirrevallrlLakagvpvPevlagdtddeeigllfalieyvpgrs 81 
                 +p  a  ++ +e al+  ++  ++   + +a   + +++gl+f++ie ++   
  KOO23080.1 206 NPT-AVKDLLSEGALMLTMRHKNI--LAGIAH--GLDDHGLPFVVIEQLESVL 253
                 444.56777777777777776655..677774..5666666799999887655 PP

  == domain 2  score: 17.4 bits;  conditional E-value: 7.2e-07
                 EEEE-SS-SGGGEEEC..TTEEEEE---TT-E CS
         APH 166 tvllHgDlhpgNllvdpddgrvtGviDfedag 197
                  ++lH+Dl+p+N+ + pd gr+ +++Df++a+
  KOO23080.1 307 CRILHRDLKPNNIGFLPD-GRL-ALFDFGLAK 336
                 4688************66.999.******997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (463 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       403  (0.0224776); expected 358.6 (0.02)
Passed bias filter:                      391  (0.0218082); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.54u 0.27s 00:00:00.81 Elapsed: 00:00:00.43
# Mc/sec: 3240.46
//
Query:       KOO23081.1  [L=568]
Description: hypothetical protein Ctob_009347 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    0.00015   21.4   0.0    0.00031   20.4   0.0    1.6  1  Dpy-30    Dpy-30 motif


Domain annotation for each model (and alignments):
>> Dpy-30  Dpy-30 motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.4   0.0   1.7e-08   0.00031       3      40 ..       5      43 ..       3      45 .. 0.83

  Alignments for each domain:
  == domain 1  score: 20.4 bits;  conditional E-value: 1.7e-08
                HHHHHH.HTHHHHHHHHHHHHHH--SSHHHHHHHHHHHH CS
      Dpy-30  3 rkYLnk.tvaPiLlqGLtelAkeRPeDPieyLAeYLlkn 40
                r+YL++  v  +  q+ t+  + RP+DPi ++++YL++ 
  KOO23081.1  5 REYLKEfDVQAKIAQAVTAAINSRPDDPILFIGNYLIDL 43
                667766457778889999999***************975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (568 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       380  (0.0211947); expected 358.6 (0.02)
Passed bias filter:                      325  (0.0181271); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.52u 0.24s 00:00:00.76 Elapsed: 00:00:00.40
# Mc/sec: 4232.41
//
Query:       KOO23082.1  [L=114]
Description: hypothetical protein Ctob_009344 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.83   10.2   6.8          1    9.9   6.8    1.1  1  APG6_N    Apg6 coiled-coil region


Domain annotation for each model (and alignments):
>> APG6_N  Apg6 coiled-coil region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   6.8   5.7e-05         1      50      99 ..      17      66 ..      10      70 .. 0.90

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 5.7e-05
      APG6_N 50 eeleeeleklekeeeelleeLkelekereeleaelaaleeelealeeeee 99
                ++l  e +++ ++  e+ +    + +e++ l++elaale+e+++l++ e+
  KOO23082.1 17 AALAAEAAEVAEAVTEAAAAATTATAEDDVLDRELAALEAEEAELDRLEA 66
                567788899999999999999*************************9886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (114 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       979  (0.0546043); expected 358.6 (0.02)
Passed bias filter:                      434  (0.0242066); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.24s 00:00:00.63 Elapsed: 00:00:00.40
# Mc/sec: 863.10
//
Query:       KOO23083.1  [L=284]
Description: hypothetical protein Ctob_009345 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.4e-09   36.0  26.3    8.4e-09   35.4  26.3    1.3  1  DUF4203   Domain of unknown function (DUF4203)


Domain annotation for each model (and alignments):
>> DUF4203  Domain of unknown function (DUF4203)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.4  26.3   4.7e-13   8.4e-09       5     148 ..      65     203 ..      61     205 .. 0.95

  Alignments for each domain:
  == domain 1  score: 35.4 bits;  conditional E-value: 4.7e-13
     DUF4203   5 ilillGlvlcffGyrlfkltlflsgfllgsllvlvlilkvvvlpsslvqgaslvaalvvGllgGllallfwelglfllgalgGlllallilslleggli 103
                 +++l+G++l +fGy+l++++ f+ g +lg+ ++l++++ +   p  ++  + ++a+  +Gll+G+l +l ++  l++lg+++G +++ l++  +   l 
  KOO23083.1  65 AAFLVGVALFVFGYKLLRPVNFFAGTYLGGTFALLMLNIF-A-PALASCPIIVLATSASGLLLGVLCALKRTSVLVVLGLVVGEIIGDLFYKTM---LA 158
                 689*****************************99999776.3.489*********************************************999...99 PP

     DUF4203 104 tslpskaiflvivvlgllgavlslklqklllivatsvvGaaavvl 148
                 +  p++++f++i+ +++l++vl+    + +  v +s++Ga++vv+
  KOO23083.1 159 RLAPEYVAFGCIGFFSVLTGVLAGNAGDFAWRVGCSFFGAYLVVA 203
                 9*****************************************985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (284 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       570  (0.0317921); expected 358.6 (0.02)
Passed bias filter:                      244  (0.0136092); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.24s 00:00:00.67 Elapsed: 00:00:00.39
# Mc/sec: 2170.06
//
Query:       KOO23084.1  [L=184]
Description: essential protein required for the maturation of 25s rRNA and 60s ribosomal subunit assembly [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    6.5e-56  189.8   3.3    7.7e-56  189.6   3.3    1.0  1  Ebp2           Eukaryotic rRNA processing protein EBP2
  ------ inclusion threshold ------
      0.055   12.7   0.1       0.12   11.5   0.0    1.5  2  Endonuc-BsobI  Restriction endonuclease BsobI


Domain annotation for each model (and alignments):
>> Ebp2  Eukaryotic rRNA processing protein EBP2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  189.6   3.3   8.6e-60   7.7e-56      30     195 ..       9     175 ..       2     183 .. 0.93

  Alignments for each domain:
  == domain 1  score: 189.6 bits;  conditional E-value: 8.6e-60
        Ebp2  30 innkeaLkekleeikl......kklpwvetldltsk.paeiedvedDlkRElaFykqaleavkearkrlkklgvpfkRPeDYFAEMvKsDehMekvkek 121
                   n++aL  kle+++       ++  wve l +t+  p +++d +dDlkRElaFy+qal+av+ a +rl +lg+p  RP+DYFAEMvK+D+hM+kvk +
  KOO23084.1   9 SSNEAALLLKLEQLTGgidpekSDETWVESLVVTAPePLQLDDPDDDLKRELAFYNQALSAVRVAQERLDRLGIPHVRPDDYFAEMVKTDKHMNKVKMR 107
                 56888888888888877777888999*********9999999********************************************************* PP

        Ebp2 122 LleeqaakkaseearkqRelkkfgKqvqveklqeRqkeKketlekikklkkkrkkldfleeeeedefdvaleea 195
                 +l eq+++ a+ee+rkq  +kkfgKqvq+e+lq Rq+eK++ + ++k+l+kkrk +       +d fd++++++
  KOO23084.1 108 MLREQTDIAAAEERRKQSANKKFGKQVQHEVLQARQQEKRRNMVEVKELRKKRKGA------GDDGFDIEVDDT 175
                 *****************************************************987......4699*****986 PP

>> Endonuc-BsobI  Restriction endonuclease BsobI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   1.4e-05      0.12     220     246 ..      10      36 ..       4      45 .. 0.83
   2 ?   -2.3   0.1      0.22   1.9e+03     166     166 ..     127     127 ..      89     160 .. 0.55

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 1.4e-05
  Endonuc-BsobI 220 kkekekyialgelkGGidPaGadehWk 246
                    ++e+   + l++l GGidP  +de W 
     KOO23084.1  10 SNEAALLLKLEQLTGGIDPEKSDETWV 36 
                    4566677899****************5 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 0.22
  Endonuc-BsobI 166 e 166
                    +
     KOO23084.1 127 N 127
                    2 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (184 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1833  (0.102237); expected 358.6 (0.02)
Passed bias filter:                      615  (0.034302); expected 358.6 (0.02)
Passed Vit filter:                        70  (0.00390429); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.45u 0.24s 00:00:00.69 Elapsed: 00:00:00.41
# Mc/sec: 1355.08
//
Query:       KOO23085.1  [L=743]
Description: glutamate-rich wd repeat-containing protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    3.4e-15   54.7   9.9     0.0047   16.9   0.0    6.8  6  LRR_6        Leucine Rich repeat
    1.3e-13   50.9   0.1    3.9e-13   49.5   0.0    1.9  2  CAF1C_H4-bd  Histone-binding protein RBBP4 or subunit C of CA
    2.2e-13   50.4  13.4    0.00035   21.3   0.0    5.5  5  WD40         WD domain, G-beta repeat
    0.00021   21.0   3.9       0.36   10.6   0.8    4.6  3  LRR_8        Leucine rich repeat
    0.00051   20.4   1.7       0.38   11.2   0.3    3.8  4  LRR_4        Leucine Rich repeats (2 copies)
     0.0037   17.6   1.1         24    6.0   0.0    4.9  5  LRR_1        Leucine Rich Repeat
     0.0041   17.4   0.7      0.062   13.6   0.5    2.7  2  ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain
  ------ inclusion threshold ------
       0.19   11.4   0.7       0.29   10.8   0.7    1.2  1  Cwf_Cwc_15   Cwf15/Cwc15 cell cycle control protein


Domain annotation for each model (and alignments):
>> LRR_6  Leucine Rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.8   0.1   0.00038      0.85       2      23 ..     569     590 ..     568     591 .. 0.87
   2 !    7.5   0.0    0.0021       4.6       6      24 .]     601     619 ..     599     619 .. 0.90
   3 !   16.9   0.0   2.1e-06    0.0047       5      24 .]     628     647 ..     624     647 .. 0.92
   4 ?    2.2   0.0      0.11   2.4e+02       2      11 ..     653     662 ..     652     663 .. 0.88
   5 !   15.7   0.2     5e-06     0.011       1      24 []     686     709 ..     686     709 .. 0.90
   6 ?    2.7   0.1     0.073   1.6e+02       5      15 ..     718     728 ..     717     730 .. 0.88

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.00038
       LRR_6   2 nthLteLdLsgNdIgDeGaeaL 23 
                 +t Lt+Ld+ +N+++  G+  L
  KOO23085.1 569 CTALTSLDVGFNNLDERGVLEL 590
                 667************9999877 PP

  == domain 2  score: 7.5 bits;  conditional E-value: 0.0021
       LRR_6   6 teLdLsgNdIgDeGaeaLa 24 
                  +L  ++++Ig +Ga+ +a
  KOO23085.1 601 VSLGFASCKIGTQGAKEIA 619
                 58999***********997 PP

  == domain 3  score: 16.9 bits;  conditional E-value: 2.1e-06
       LRR_6   5 LteLdLsgNdIgDeGaeaLa 24 
                 L +L+L +N+I+ eGa+aLa
  KOO23085.1 628 LASLNLEYNCIDPEGAMALA 647
                 669****************8 PP

  == domain 4  score: 2.2 bits;  conditional E-value: 0.11
       LRR_6   2 nthLteLdLs 11 
                 +++Lt+L+Ls
  KOO23085.1 653 DPTLTKLNLS 662
                 589******9 PP

  == domain 5  score: 15.7 bits;  conditional E-value: 5e-06
       LRR_6   1 snthLteLdLsgNdIgDeGaeaLa 24 
                 +n+hLt+L+Ls N+I+   ++aLa
  KOO23085.1 686 TNRHLTYLNLSTNNIDVRAGTALA 709
                 59*************988888886 PP

  == domain 6  score: 2.7 bits;  conditional E-value: 0.073
       LRR_6   5 LteLdLsgNdI 15 
                 L+++dL++N +
  KOO23085.1 718 LKHVDLTSNRL 728
                 9********97 PP

>> CAF1C_H4-bd  Histone-binding protein RBBP4 or subunit C of CAF1 complex
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.5   0.0   1.7e-16   3.9e-13       1      66 [.      69     136 ..      69     137 .. 0.91
   2 ?   -3.4   0.0       5.5   1.2e+04      28      36 ..     370     378 ..     369     386 .. 0.71

  Alignments for each domain:
  == domain 1  score: 49.5 bits;  conditional E-value: 1.7e-16
                  HHHHHHHHHHHHHEEEEEEEE-SS--S-EEE...........-S-B---EEEEEEEE.----TTSS-EEEEEEEEEEE CS
  CAF1C_H4-bd   1 eeylewkknapfLYdmlhshslewPsLsfdw...........lPdtvsslskqrllv.Gtqtsgkeqnylyvakvslp 66 
                  +e+l+++++a   Ydmlh+++ ++P+L+f +           +P t+       +lv Gtq+++  +n+l+ +k+s +
   KOO23085.1  69 DEKLDYDSSA---YDMLHRMTWDYPCLTFGFvrdslgeqrtqYPMTS-------YLVaGTQAERAADNQLVCLKLSKM 136
                  799*******...******************8877777777777777.......********************9976 PP

  == domain 2  score: -3.4 bits;  conditional E-value: 5.5
                  -EEE-S-B- CS
  CAF1C_H4-bd  28 sfdwlPdtv 36 
                  s++w P+++
   KOO23085.1 370 SVEWSPHES 378
                  899*99975 PP

>> WD40  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.4   0.0    0.0082        18       2      37 ..     218     255 ..     217     256 .. 0.84
   2 !   21.3   0.0   1.5e-07   0.00035       7      38 .]     270     303 ..     267     303 .. 0.84
   3 !   11.6   0.3   0.00018       0.4      22      38 .]     331     348 ..     315     348 .. 0.71
   4 !   16.1   0.7   6.8e-06     0.015       2      38 .]     356     394 ..     355     394 .. 0.87
   5 ?   -2.1   0.1       3.9   8.7e+03       9      25 ..     512     526 ..     505     532 .. 0.81

  Alignments for each domain:
  == domain 1  score: 6.4 bits;  conditional E-value: 0.0082
                 EEEEEEESS.SS........E.EEEEEETTSSEEEEEETTSEEEEE CS
        WD40   2 qclrtltGH.ss........v.tslafspdgawlasGsdDgtvriW 37 
                 ++l t++GH +         v t++        la+G+ +g+++ W
  KOO23085.1 218 EPLFTFDGHaDEgfaldwsrVaTGV--------LATGDNKGKIHRW 255
                 6899*****6337899999988999........****999999877 PP

  == domain 2  score: 21.3 bits;  conditional E-value: 1.5e-07
                 EESS.SSEEEEEEETTSSEEE..EEETTSEEEEEE CS
        WD40   7 ltGH.ssvtslafspdgawla..sGsdDgtvriWd 38 
                 ++GH + v +l +sp  + ++  +G+ D tvr+Wd
  KOO23085.1 270 FSGHeGAVEDLEWSPVEPNVFmsCGG-DSTVRVWD 303
                 89**888****999999997442556.*******9 PP

  == domain 3  score: 11.6 bits;  conditional E-value: 0.00018
                 SSE.EEEEETTSEEEEEE CS
        WD40  22 gaw.lasGsdDgtvriWd 38 
                  ++ +++G dDg+ r+Wd
  KOO23085.1 331 VNYlVVTGADDGSFRVWD 348
                 3442579**********9 PP

  == domain 4  score: 16.1 bits;  conditional E-value: 6.8e-06
                 EEEEEEESS.SSEEEEEEETTSSE.EEEEETTSEEEEEE CS
        WD40   2 qclrtltGH.ssvtslafspdgaw.lasGsdDgtvriWd 38 
                 +++ ++  H   +ts+ +sp+ +  +a ++dD+ + +Wd
  KOO23085.1 356 EPVAKFNWHhAAITSVEWSPHESStIAVCGDDHQLTLWD 394
                 778889988677*****99999998888899*******9 PP

  == domain 5  score: -2.1 bits;  conditional E-value: 3.9
                 SSSSEEEEEEETTSSEE CS
        WD40   9 GHssvtslafspdgawl 25 
                 GH  vt+  ++p  +w+
  KOO23085.1 512 GH--VTDSYWCPGRRWV 526
                 88..9999899999997 PP

>> LRR_8  Leucine rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.0   0.0     0.079   1.8e+02      46      61 .]     567     582 ..     560     584 .. 0.62
   2 ?    3.4   0.1     0.028        63      25      57 ..     626     662 ..     621     666 .. 0.65
   3 !   10.6   0.8   0.00016      0.36      19      60 ..     682     727 ..     680     728 .. 0.73

  Alignments for each domain:
  == domain 1  score: 2.0 bits;  conditional E-value: 0.079
                 TT--S-.EEE--SS-- CS
       LRR_8  46 sgLpsLrsLdLsgNrL 61 
                 +g+++L+sLd+  N+L
  KOO23085.1 567 RGCTALTSLDVGFNNL 582
                 4566666666666655 PP

  == domain 2  score: 3.4 bits;  conditional E-value: 0.028
                 TT--EEE--SS---.....GGGGGGGTT--S-.EEE-- CS
       LRR_8  25 snLkvLdLsnNllt.....tlspgafsgLpsLrsLdLs 57 
                  +L +L+L +N+++      l ++a+sg p L++L+Ls
  KOO23085.1 626 AALASLNLEYNCIDpegamAL-ADALSGDPTLTKLNLS 662
                 678899999999963333233.4666666666666665 PP

  == domain 3  score: 10.6 bits;  conditional E-value: 0.00016
                 TSSTT-TT--EEE--SS---GGGGGGGTT--S....-.EEE--SS- CS
       LRR_8  19 eaFkglsnLkvLdLsnNllttlspgafsgLps....LrsLdLsgNr 60 
                 +a k++++L++L+Ls N++++    a++g  +    L++ dL++Nr
  KOO23085.1 682 SALKTNRHLTYLNLSTNNIDVRAGTALAGAVAingvLKHVDLTSNR 727
                 5778999************998888888866533334555555555 PP

>> LRR_4  Leucine Rich repeats (2 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.0   0.0     0.016        35      21      36 ..     568     582 ..     544     585 .. 0.79
   2 ?   -2.4   0.0       3.3   7.5e+03      24      36 ..     627     638 ..     617     640 .. 0.69
   3 !   11.2   0.3   0.00017      0.38       1      36 [.     654     700 ..     654     705 .. 0.82
   4 ?   -0.8   0.0         1   2.3e+03       3      13 ..     718     728 ..     717     734 .. 0.57

  Alignments for each domain:
  == domain 1  score: 5.0 bits;  conditional E-value: 0.016
                 H-TT--EEE-.-S--- CS
       LRR_4  21 klpnLkeLdLsgNnli 36 
                 +++ L++Ld+ +N ++
  KOO23085.1 568 GCTALTSLDVGFN-NL 582
                 699*******666.33 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 3.3
                 T--EEE-.-S--- CS
       LRR_4  24 nLkeLdLsgNnli 36 
                  L +L+L  N  i
  KOO23085.1 627 ALASLNLEYN-CI 638
                 6777888666.33 PP

  == domain 3  score: 11.2 bits;  conditional E-value: 0.00017
                 SS--EEE--.SS-..........--E-S-.HHH-TT--EEE-.-S--- CS
       LRR_4   1 pnLevLdLs.nNq..........ltdipl.leklpnLkeLdLsgNnli 36 
                 p L++L+Ls  N+          +  i++ l+ + +L++L+Ls N +i
  KOO23085.1 654 PTLTKLNLSeMNRspedrddmggILAISSaLKTNRHLTYLNLSTN-NI 700
                 679******77889******99966677757779********888.33 PP

  == domain 4  score: -0.8 bits;  conditional E-value: 1
                 --EEE--SS-- CS
       LRR_4   3 LevLdLsnNql 13 
                 L+++dL +N+l
  KOO23085.1 718 LKHVDLTSNRL 728
                 44555555443 PP

>> LRR_1  Leucine Rich Repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.6   0.0      0.31   6.8e+02       2      13 ..     572     583 ..     571     595 .. 0.84
   2 ?    2.0   0.0      0.22     5e+02       2      12 ..     628     638 ..     627     654 .. 0.83
   3 ?   -2.8   0.1         8   1.8e+04       2       8 ..     656     662 ..     655     667 .. 0.83
   4 ?    1.7   0.0      0.28   6.2e+02       1      12 [.     689     700 ..     689     707 .. 0.85
   5 ?    6.0   0.0     0.011        24       2      17 ..     718     733 ..     717     736 .. 0.80

  Alignments for each domain:
  == domain 1  score: 1.6 bits;  conditional E-value: 0.31
       LRR_1   2 LrhLdLsnnpll 13 
                 L++Ld++ n+l+
  KOO23085.1 572 LTSLDVGFNNLD 583
                 99*******994 PP

  == domain 2  score: 2.0 bits;  conditional E-value: 0.22
       LRR_1   2 LrhLdLsnnpl 12 
                 L +L+L++n++
  KOO23085.1 628 LASLNLEYNCI 638
                 558*******8 PP

  == domain 3  score: -2.8 bits;  conditional E-value: 8
       LRR_1   2 LrhLdLs 8  
                 L++L+Ls
  KOO23085.1 656 LTKLNLS 662
                 999**96 PP

  == domain 4  score: 1.7 bits;  conditional E-value: 0.28
       LRR_1   1 nLrhLdLsnnpl 12 
                 +L++L+Ls n++
  KOO23085.1 689 HLTYLNLSTNNI 700
                 69*****98886 PP

  == domain 5  score: 6.0 bits;  conditional E-value: 0.011
       LRR_1   2 LrhLdLsnnpllglpp 17 
                 L+h dL++n+l g+++
  KOO23085.1 718 LKHVDLTSNRLCGISS 733
                 9**********55544 PP

>> ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.4   0.0     0.086   1.9e+02      35      68 ..     271     305 ..     233     309 .. 0.78
   2 !   13.6   0.5   2.8e-05     0.062      28      90 ..     300     374 ..     296     376 .. 0.79

  Alignments for each domain:
  == domain 1  score: 2.4 bits;  conditional E-value: 0.086
  ANAPC4_WD40  35 dkedsevrsLaWkpdg.klLavaysdgevrlldae 68 
                  +++++ v++L+W+p + ++++    d++vr+ d+ 
   KOO23085.1 271 SGHEGAVEDLEWSPVEpNVFMSCGGDSTVRVWDVR 305
                  567899*******9873666667789999999986 PP

  == domain 2  score: 13.6 bits;  conditional E-value: 2.8e-05
  ANAPC4_WD40  28 rvwtl.........eedkedsevrsLaWkpdgklLav.aysdgevrlld...aesgkvvhslsvksekavtclgWg 90 
                  rvw++          ++k++  v+ ++W++  + L+v + +dg+ r+ d    +sg+ v +++ ++  a+t+++W+
   KOO23085.1 300 RVWDVrrkagsalaVDEKHGVDVNVMSWNKLVNYLVVtGADDGSFRVWDlrsFQSGEPVAKFNWHHA-AITSVEWS 374
                  6666666666666668999***********9999988356788988765111689**********99.6******7 PP

>> Cwf_Cwc_15  Cwf15/Cwc15 cell cycle control protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.7   0.00013      0.29     129     148 ..     139     158 ..      27     180 .. 0.75

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00013
                 -------------------- CS
  Cwf_Cwc_15 129 sdddsdsdsdddddedetae 148
                    d+ds+sddd+ded+++ 
  KOO23085.1 139 TIHDDDSESDDDSDEDDEDP 158
                 22366677777777776654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (743 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       417  (0.0232584); expected 358.6 (0.02)
Passed bias filter:                      379  (0.0211389); expected 358.6 (0.02)
Passed Vit filter:                        52  (0.00290033); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.66u 0.28s 00:00:00.94 Elapsed: 00:00:00.45
# Mc/sec: 4988.50
//
Query:       KOO23086.1  [L=678]
Description: DNA polymerase alpha 2 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.4e-31  108.7   0.4    3.4e-31  108.3   0.4    1.2  1  DNA_pol_E_B    DNA polymerase alpha/epsilon subunit B
    1.8e-05   24.9   0.0    0.00068   19.7   0.0    2.3  1  Pol_alpha_B_N  DNA polymerase alpha subunit B N-terminal
  ------ inclusion threshold ------
       0.26   11.3   5.9       0.19   11.8   0.9    2.9  3  DUF5538        Family of unknown function (DUF5538)


Domain annotation for each model (and alignments):
>> DNA_pol_E_B  DNA polymerase alpha/epsilon subunit B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  108.3   0.4   5.7e-35   3.4e-31       1     211 []     330     558 ..     330     558 .. 0.89

  Alignments for each domain:
  == domain 1  score: 108.3 bits;  conditional E-value: 5.7e-35
                  EEEEES--S-TT----HHHHHHHHHHH.HTT--SEEEEES-SSBTTSHHHHHT---S--SSHHHHHHHHTHHHHTTS-........TTS.EEEEE--T CS
  DNA_pol_E_B   1 vvivsglnldndnrsleaLrkiLqgyapeesppdvlilaGnfvdaahkaiasskvstdekkenfdalalllsilesll........ekt.tvvlvPgp 89 
                  ++ ++g+++++d++++ ++  +Lq++   e +pd+l+l+G+fvd +h+a a+++v     ++++++ +++l+ l+++         +k+ +vvl+P+p
   KOO23086.1 330 IMSAAGPFTTTDDLTYAPFTALLQKAM--EVRPDCLVLLGPFVDESHPAVAGGDV---PVTYETLFCRQVLDPLKDWIesqleaeaTKIpHVVLLPSP 422
                  56789**********************..*************************9...6999999999999999999888889877444369****** PP

                  TBTT-S-SBSB--..--TTTTT--TTT...EEE--BSEEEEETTEEEEE--S-HHHH---EEESHHHH.......HS-HHHHHHHHHHHHTBS---SS CS
  DNA_pol_E_B  90 nDpanstvlPqqP..lprlllsrikrvfkelklvtNPsrielnsvevvltsddivkdlkreslkesnt.......dverlrklvktildqrhlaPlap 178
                  +D++   ++Pq+P  +pr +l+++ r  + +++++NP ++++ + +v++ s d++  l +++l + +t       + +r+++l++++l+qrhl Pl+p
   KOO23086.1 423 KDAHLLGAYPQPPleFPRNALPEHVR--PYMHSLSNPATFRIGGLRVAAASVDTLFLLGQQELAKVPTptdpsapKPDRMARLASHVLQQRHLLPLFP 518
                  *************4445666665555..579************************************99***************************** PP

                  ....--B-GGGGGGGB-GGG-...--SEEE---SS--EEE CS
  DNA_pol_E_B 179 ....tlrpvswdkddalvlep...lPdvlvlpdelpeFak 211
                      + +p ++d + +l  +    lP+vl++p+el++Fak
   KOO23086.1 519 tpldERQPLPVDVTANLRAGGlpcLPEVLLVPSELAPFAK 558
                  9999888888888888886332349*************86 PP

>> Pol_alpha_B_N  DNA polymerase alpha subunit B N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.7   0.0   1.1e-07   0.00068       2     221 ..      21     202 ..      20     212 .. 0.61

  Alignments for each domain:
  == domain 1  score: 19.7 bits;  conditional E-value: 1.1e-07
                    XXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXX.XXXX........XXXX...X.XX CS
  Pol_alpha_B_N   2 dvlseleslmklhalsvedLfiKWEsfsikmkleeskkltlknlrefkkdlqdqlekrakss.kkpktekksaaatpraaakngdlfgmldgl.ip 95 
                    d+++ + ++++ ++ls+ dL ++W+   +   ++  k ++l+ l +++ + ++  + ++++  +k++  +   ++ p+  + n+d   +l g+   
     KOO23086.1  21 DLVTRCLKICEQYRLSATDLQVQWDLLTM---NKSAKRMSLEALADLETQCRNDDSAKRQKLdRKQQLTA---KGPPKPGTFNKDTAHLLAGVgLD 110
                    78999*********************999...33445589*******99888776663322212222222...34444566777777777776566 PP

                    XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXX..XXXXXXXX....XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
  Pol_alpha_B_N  96 stpalkkrklssakrksafetpsrskssssklefsspeasktpasaekksesseglpsvsfsdrqnpgeiletLNehlelaegpiapfselesrvk 191
                     tpa +++ +          +p+             p+ + +p+ +       e++p ++f++r++ g+++ +LN+    a++     +e + +v+
     KOO23086.1 111 TTPAYRRSAAG--------ISPV-------------PGFALSPMGT-------EAAPGSAFASRAEVGKVVVSLNTWRTFASS-----AE-QLEVE 172
                    77763222221........2222.............2222222222.......233456799999999999999964444444.....12.24455 PP

                    XXXXXXXXXXXX--S---HHHHHHHHHHHH CS
  Pol_alpha_B_N 192 ltaatDpkkykYrtMaqklsEasevLDdrI 221
                      a    + ++   M ++l E++  LD ++
     KOO23086.1 173 AVAPPRTAELAESRMWERLDERARLLDAQV 202
                    555555555555667777777777777665 PP

>> DUF5538  Family of unknown function (DUF5538)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   0.0       1.6   9.7e+03      15     116 ..      98     116 ..      93     139 .. 0.58
   2 ?   11.8   0.9   3.2e-05      0.19      33     115 ..     295     377 ..     280     384 .. 0.89
   3 ?    0.6   0.1     0.094   5.6e+02      19      48 ..     401     430 ..     395     472 .. 0.80

  Alignments for each domain:
  == domain 1  score: -3.4 bits;  conditional E-value: 1.6
     DUF5538  15 kdalwleggvsarwaraphsaplrpprelhaappsatptqtvmrpagfprrtrlmvrsapptqrpptgsgcvsglwrkglglrpqtllrvggvvlssap 113
                 kd+  l  gv                                                                                    l ++p
  KOO23086.1  98 KDTAHLLAGV-----------------------------------------------------------------------------------GLDTTP 113
                 4444444444...................................................................................444444 PP

     DUF5538 114 alr 116
                 a r
  KOO23086.1 114 AYR 116
                 443 PP

  == domain 2  score: 11.8 bits;  conditional E-value: 3.2e-05
     DUF5538  33 hsaplrpprelhaappsatptqtvmrpagfprrtrlmvrsapptqrpptgsgcvsglwrkglglrpqtllrvggvvlssapal 115
                 +   + ppr+ +aa  +++ + +   pa       +m  + p t          + l +k + +rp+ l+ +g  v  s pa+
  KOO23086.1 295 RVLTVLPPRDAQAAAAATAAAAAADGPAAGRSAVAIMSAAGPFTTTDDLTYAPFTALLQKAMEVRPDCLVLLGPFVDESHPAV 377
                 555678********999999999999999999999999999**************************************9997 PP

  == domain 3  score: 0.6 bits;  conditional E-value: 0.094
     DUF5538  19 wleggvsarwaraphsaplrpprelhaapp 48 
                 w+e  + a  ++ ph   l  p++ h    
  KOO23086.1 401 WIESQLEAEATKIPHVVLLPSPKDAHLLGA 430
                 99******************9*99996544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (678 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       597  (0.033298); expected 358.6 (0.02)
Passed bias filter:                      410  (0.022868); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.58u 0.29s 00:00:00.86 Elapsed: 00:00:00.43
# Mc/sec: 4699.49
//
Query:       KOO23087.1  [L=430]
Description: iron-regulated protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    4.5e-51  173.9   0.0    5.9e-51  173.5   0.0    1.2  1  Cofac_haem_bdg  Haem-binding uptake, Tiki superfamily, ChaN
  ------ inclusion threshold ------
       0.36   11.3   0.1       0.36   11.3   0.1    2.6  2  LRV             Leucine rich repeat variant


Domain annotation for each model (and alignments):
>> Cofac_haem_bdg  Haem-binding uptake, Tiki superfamily, ChaN
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  173.5   0.0   6.6e-55   5.9e-51       2     213 ..      91     319 ..      90     320 .. 0.90

  Alignments for each domain:
  == domain 1  score: 173.5 bits;  conditional E-value: 6.6e-55
                     HHHHTT-SEEEEEE-TT-HHHHHHHHHHHHHH..H.TT--EEEEEEEEEGGGHHHHHHHHHT.HHH......TT--TTS-..GGGTHHHHHHHHT CS
  Cofac_haem_bdg   2 lkelaqadvvllGEkHdnpdhhalqlellkaLa.a.agarlalglEmferdqqpaLdrylagkideeellealewekrWgydwalYrpllefare 94 
                     +k+l+q ++v+lGE+H+++++h lq +++++L+ +  +  +a+glE+++r++qpaLd+++ag+i e el+ea+ew+krW  ++a Y+p+++++re
      KOO23087.1  91 VKQLQQCRAVFLGEHHNSAADHLLQSAVIRELHkErGSLPMAVGLEAVQRRFQPALDSFVAGRIGEVELEEATEWRKRWFWPFAAYAPVFRACRE 185
                     89******************************962544569****************************************************** PP

                     SS--EEEEE--HHHHHHHHTT......------SSSS............-HHHHHHHHHHHHHHHT-............TTTHHHHHHHHHHHHH CS
  Cofac_haem_bdg  95 aglplvalnlprelvrkvareGleslseeeereraslpaesei....leseeyraaleevlaehhcg............eakeealerfveaQvl 173
                      g+pl+aln+++e  ++v  +Gl +l++e+ r  ++ p+ +++    +  +ey a++ +   ++h+               ++ ++++f++ +vl
      KOO23087.1 186 LGIPLLALNVDSEDLSRVEVGGLPALPPETLRSYVTDPEGFSAfaatTAFKEYVAYIVKPSYQMHQRmgilrttitgqmLDEDMSFRNFFSGRVL 280
                     ***************************98888887777666669776555666666666555555557*********98888999********** PP

                     HHHHHHHHHHH-SS.E.....EEEEEEHHHH-TTTSHHHH CS
  Cofac_haem_bdg 174 wDetMAesiaaalkarnpgklvvviaGsgHveyglGipar 213
                     wDe M+++ aa+ + +np++l+v ++Gs Hv++g G+par
      KOO23087.1 281 WDESMGSASAAWCR-NNPEGLLVGLVGSDHVKFGCGVPAR 319
                     ***********999.589********************98 PP

>> LRV  Leucine rich repeat variant
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.1     4e-05      0.36       9      26 .]     207     224 ..     200     224 .. 0.83
   2 ?   -3.6   0.6         2   1.8e+04       4      10 ..     389     395 ..     387     404 .. 0.71

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 4e-05
         LRV   9 rrPdlPpeaLerLahDPd 26 
                   P+lPpe+L++ ++DP+
  KOO23087.1 207 GLPALPPETLRSYVTDPE 224
                 5599*************7 PP

  == domain 2  score: -3.6 bits;  conditional E-value: 2
         LRV   4 RaaVArr 10 
                 Raa+++ 
  KOO23087.1 389 RAAAVSQ 395
                 8898876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (430 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       252  (0.0140554); expected 358.6 (0.02)
Passed bias filter:                      221  (0.0123264); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.47u 0.23s 00:00:00.70 Elapsed: 00:00:00.40
# Mc/sec: 3264.49
//
Query:       KOO23088.1  [L=114]
Description: hypothetical protein Ctob_003077 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.021   14.9   0.2       0.04   14.0   0.2    1.4  1  YrhC      YrhC-like protein


Domain annotation for each model (and alignments):
>> YrhC  YrhC-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.2   2.2e-06      0.04      17      58 ..      50      90 ..      44      96 .. 0.90

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 2.2e-06
        YrhC 17 LLalsaFLyiGlviPseaketlkksillgaivvfLllaflfl 58
                L+ +s+ +yiG ++P  a+  l+  +++  ++v+L  a +f+
  KOO23088.1 50 LIWISGVFYIGGLLPW-AIRSLEFHVAIWHVCVVLGSASIFA 90
                7789999*********.*******************998886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (114 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       408  (0.0227564); expected 358.6 (0.02)
Passed bias filter:                      247  (0.0137766); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.21s 00:00:00.57 Elapsed: 00:00:00.37
# Mc/sec: 916.74
//
Query:       KOO23089.1  [L=160]
Description: hypothetical protein Ctob_003075, partial [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (160 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       393  (0.0219198); expected 358.6 (0.02)
Passed bias filter:                      337  (0.0187964); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.23s 00:00:00.59 Elapsed: 00:00:00.36
# Mc/sec: 1316.12
//
Query:       KOO23090.1  [L=211]
Description: hypothetical protein Ctob_003090 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (211 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       974  (0.0543254); expected 358.6 (0.02)
Passed bias filter:                      508  (0.028334); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.40u 0.22s 00:00:00.62 Elapsed: 00:00:00.35
# Mc/sec: 1785.01
//
Query:       KOO23091.1  [L=557]
Description: chloride channel 2 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    4.4e-27   95.2  15.6    6.5e-27   94.7  15.6    1.2  1  Voltage_CLC  Voltage gated chloride channel


Domain annotation for each model (and alignments):
>> Voltage_CLC  Voltage gated chloride channel
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   94.7  15.6   3.6e-31   6.5e-27     206     352 ..      15     156 ..       3     158 .. 0.83

  Alignments for each domain:
  == domain 1  score: 94.7 bits;  conditional E-value: 3.6e-31
                  HHHHHHHHHHHCCCSCC.CSSSSCCHHHHHCTT-S-HHHHHH...HHHHHHHHHHHHHCTT-CSBSHHHHHHHHHHHHHHHHHHHHHH-C..TSSC.. CS
  Voltage_CLC 206 palvgllvgllglllpasvlgggyeliasllegstlllsllllllllllkllataltlgsgvpgGifaPsLviGAalGrlvglvlalllp..gaass. 300
                  + +v++++++ ++++  ++++++ e ++           l+ l +++++k+++t++++g+ +  Gif+P+++iGAa+Gr++g++l++ll+  +++ + 
   KOO23091.1  15 VNVVAFVTAMFSFPF--DFFSSEPEEARWSN-----PSLLVNLCIYTVCKFFFTSVAAGCPLGVGIFTPTFLIGAATGRAFGEALNALLVltSSSFQv 105
                  444555555555554..35666664443322.....35788999**************************************9999998888666677 PP

                  ..HHHHHHCCTHHHHHCCS-HHHHHHHHHHCC--GCCHHHHHHHHHHHHHHH CS
  Voltage_CLC 301 dpgafalvGmaaflagvtrapltaiviviEltgdlelllplmlavliAkava 352
                  + ga+a+vG aa+ agvtr +++++v+v+Eltg+l++llp+++avl A+ ++
   KOO23091.1 106 TAGAYAVVGSAAMAAGVTR-TISCAVMVFELTGQLNHLLPVLVAVLAAYGTG 156
                  99*****************.*****************************886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (557 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       423  (0.0235931); expected 358.6 (0.02)
Passed bias filter:                      222  (0.0123822); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.22s 00:00:00.68 Elapsed: 00:00:00.36
# Mc/sec: 4658.55
//
Query:       KOO23092.1  [L=139]
Description: hypothetical protein Ctob_003078 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (139 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       229  (0.0127726); expected 358.6 (0.02)
Passed bias filter:                      212  (0.0118244); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.21s 00:00:00.55 Elapsed: 00:00:00.36
# Mc/sec: 1165.55
//
Query:       KOO23093.1  [L=314]
Description: thiol-disulfide oxidoreductase dcc [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      4e-16   60.4   0.1    7.6e-16   59.4   0.1    1.5  1  DUF393    Protein of unknown function, DUF393


Domain annotation for each model (and alignments):
>> DUF393  Protein of unknown function, DUF393
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.4   0.1   4.3e-20   7.6e-16       1     111 [.     185     295 ..     185     297 .. 0.91

  Alignments for each domain:
  == domain 1  score: 59.4 bits;  conditional E-value: 4.3e-20
      DUF393   1 vlyDgeCplCnravqflerrdrkgrirfadlqsasgkallkelg.idaeqldslllv.ieagrvysgsdAaleiaralpglwrllalllvlprlkklrd 97 
                 +lyD +C +C+++v+fl +rd +g++ + d++s +  +  ++ g +d+  + + +++  ++g+v++g++++ e+++a++   +++++++  p ++ ++d
  KOO23093.1 185 LLYDSKCAVCRWEVDFLSARDSEGKLTYTDVESPEYDETAARNGrVDYGTALASFHAvRSDGEVLRGMQVFQEAYKAVGL--GWVWAIYENPVAHAILD 281
                 69*****************************888877766555558899999999*9889999**************999..99999************ PP

      DUF393  98 alYrliarnRyrlf 111
                 a+Y l+ar+R  l+
  KOO23093.1 282 AGYGLFARCRTYLT 295
                 **********9886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (314 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       405  (0.0225891); expected 358.6 (0.02)
Passed bias filter:                      314  (0.0175135); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.19s 00:00:00.61 Elapsed: 00:00:00.35
# Mc/sec: 2723.72
//
Query:       KOO23094.1  [L=191]
Description: hypothetical protein Ctob_003088 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
  ------ inclusion threshold ------
      0.064   12.9  12.6      0.076   12.6   4.5    2.1  2  Virul_fac_BrkB   Virulence factor BrkB
      0.089   12.8   0.6       0.24   11.4   0.0    1.9  2  Orthoreo_P10     Orthoreovirus membrane fusion protein p10
       0.77    9.8   5.9        1.1    9.2   0.2    2.5  2  Gram_pos_anchor  LPXTG cell wall anchor motif


Domain annotation for each model (and alignments):
>> Virul_fac_BrkB  Virulence factor BrkB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.4   1.1     0.002        12       7      26 ..      14      33 ..       9      38 .. 0.89
   2 ?   12.6   4.5   1.3e-05     0.076      83     179 ..      71     171 ..      43     180 .. 0.58

  Alignments for each domain:
  == domain 1  score: 5.4 bits;  conditional E-value: 0.002
  Virul_fac_BrkB  7 llAaalayytllSlfPlllv 26
                    llA   a+++  Sl+Pll++
      KOO23094.1 14 LLAFVSAFFSTVSLVPLLAF 33
                    678889************97 PP

  == domain 2  score: 12.6 bits;  conditional E-value: 1.3e-05
  Virul_fac_BrkB  83 wsasggvsalrralnkiygveesrsflrkrllsllllllllvllllslvls..vflqslllasapllglglelsell..llqllrwl.vallllv 172
                     +s +++v+a+   +  i + ++ ++ lr rl  + l+ll+ +l+ ++l ++   ++   + +++++ ++ +++ +++   ++++ +  +++++ +
      KOO23094.1  71 LSCLSLVAAILGRMLSIAEDRQ-NGTLRARLNKINLFLLVFALVTVMLSIIlfPIALYYSGFIMFVDEIVWDSNQWFtlGASFMAISaTLIVISF 164
                     5666666666666666666655.478888887766666555555555444400444444555557777777777776442222222213344446 PP

  Virul_fac_BrkB 173 lafallY 179
                      ++al+Y
      KOO23094.1 165 GTLALVY 171
                     6666666 PP

>> Orthoreo_P10  Orthoreovirus membrane fusion protein p10
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.2      0.26   1.6e+03      29      62 ..      93     128 ..      60     136 .. 0.58
   2 ?   11.4   0.0   4.1e-05      0.24      44      73 ..     152     182 ..     142     189 .. 0.81

  Alignments for each domain:
  == domain 1  score: -0.9 bits;  conditional E-value: 0.26
  Orthoreo_P10  29 ggdlqatss.liaywpylaagggliviill.lally 62 
                    g l+a    +  +   +a    ++ iil+ +al+y
    KOO23094.1  93 NGTLRARLNkINLFLLVFALVTVMLSIILFpIALYY 128
                   444555433033344455555555555555566665 PP

  == domain 2  score: 11.4 bits;  conditional E-value: 4.1e-05
  Orthoreo_P10  44 ylaagggliviill.lallycckakvkadav 73 
                   ++a+   livi +  lal+ycc+ k +  a+
    KOO23094.1 152 FMAISATLIVISFGtLALVYCCQHKPQEGAA 182
                   789999999888756********99887766 PP

>> Gram_pos_anchor  LPXTG cell wall anchor motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.4   1.2     0.025   1.5e+02      17      34 ..     104     121 ..     101     126 .. 0.78
   2 ?    9.2   0.2   0.00019       1.1      16      36 ..     142     162 ..     141     167 .. 0.90

  Alignments for each domain:
  == domain 1  score: 2.4 bits;  conditional E-value: 0.025
                      XXXXXXXXXXXXXXXXXX CS
  Gram_pos_anchor  17 nifltaaGllallggllL 34 
                      n+fl++++l  + +++ L
       KOO23094.1 104 NLFLLVFALVTVMLSIIL 121
                      89******7777666655 PP

  == domain 2  score: 9.2 bits;  conditional E-value: 0.00019
                      XXXXXXXXXXXXXXXXXXXXX CS
  Gram_pos_anchor  16 gnifltaaGllallggllLlv 36 
                      +n ++t+++++++++++l+++
       KOO23094.1 142 SNQWFTLGASFMAISATLIVI 162
                      799*************99865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (191 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       983  (0.0548274); expected 358.6 (0.02)
Passed bias filter:                      407  (0.0227007); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.46u 0.27s 00:00:00.73 Elapsed: 00:00:00.42
# Mc/sec: 1351.86
//
Query:       KOO23095.1  [L=412]
Description: tesmin tso1-like protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.1e-23   81.4  50.6    5.7e-12   45.7  20.9    2.5  2  TCR       Tesmin/TSO1-like CXC domain, cysteine-rich domain
  ------ inclusion threshold ------
        1.7    8.9  42.7          2    8.6  16.3    2.9  2  MSL2-CXC  CXC domain of E3 ubiquitin-protein ligase MSL2


Domain annotation for each model (and alignments):
>> TCR  Tesmin/TSO1-like CXC domain, cysteine-rich domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.2  21.7   1.7e-14   1.5e-10       2      38 .]     211     246 ..     210     246 .. 0.96
   2 !   45.7  20.9   6.4e-16   5.7e-12       2      37 ..     294     329 ..     293     330 .. 0.96

  Alignments for each domain:
  == domain 1  score: 41.2 bits;  conditional E-value: 1.7e-14
         TCR   2 kgCnCkkskClklYCeCfaagklCsskCkCeeCkNke 38 
                 k+CnC++skClklYC+Cf+ g +C+  C+C++C Nke
  KOO23095.1 211 KKCNCRNSKCLKLYCDCFSVGLMCDG-CNCNDCANKE 246
                 79************************.********85 PP

  == domain 2  score: 45.7 bits;  conditional E-value: 6.4e-16
         TCR   2 kgCnCkkskClklYCeCfaagklCsskCkCeeCkNk 37 
                 +gCnC+ks+C+k+YCeC++ g+ C++kCkC++C N+
  KOO23095.1 294 RGCNCTKSRCIKNYCECWQMGIECTDKCKCVDCANN 329
                 79*********************************7 PP

>> MSL2-CXC  CXC domain of E3 ubiquitin-protein ligase MSL2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.6  16.3   0.00022         2      16      50 ..     209     248 ..     201     254 .. 0.74
   2 ?    5.1  18.4    0.0027        24      17      51 ..     298     333 ..     285     336 .. 0.79

  Alignments for each domain:
  == domain 1  score: 8.6 bits;  conditional E-value: 0.00022
    MSL2-CXC  16 kkkkltCrnqR.....CpCYvngksCtdCkCrgCkNphkk 50 
                 ++kk  Crn++     C C++ g  C++C+C  C N  ++
  KOO23095.1 209 RPKKCNCRNSKclklyCDCFSVGLMCDGCNCNDCANKEET 248
                 566777777762222268******************8664 PP

  == domain 2  score: 5.1 bits;  conditional E-value: 0.0027
    MSL2-CXC  17 kkkltCrnqRCpCYvngksCtd.CkCrgCkNphkkd 51 
                  +k  C ++ C C++ g  Ctd CkC+ C N  + d
  KOO23095.1 298 CTKSRCIKNYCECWQMGIECTDkCKCVDCANNGNVD 333
                 34667***************977*******986655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (412 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1014  (0.0565564); expected 358.6 (0.02)
Passed bias filter:                      324  (0.0180713); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.52u 0.22s 00:00:00.74 Elapsed: 00:00:00.40
# Mc/sec: 3069.94
//
Query:       KOO23096.1  [L=223]
Description: hypothetical protein Ctob_003082 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
  ------ inclusion threshold ------
       0.23    9.5  16.9       0.34    8.9  16.9    1.2  1  DUF5401        Family of unknown function (DUF5401)
       0.41    9.4   3.0       0.53    9.0   3.0    1.1  1  Peptidase_M29  Thermophilic metalloprotease (M29)


Domain annotation for each model (and alignments):
>> DUF5401  Family of unknown function (DUF5401)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.9  16.9   3.8e-05      0.34     411     528 ..      86     209 ..      72     220 .. 0.63

  Alignments for each domain:
  == domain 1  score: 8.9 bits;  conditional E-value: 3.8e-05
     DUF5401 411 qrkikeqkvemekirkeqeearq...eelrrleeer.arelervreeelerqqqverlrqqeeerkrkkle..leke.krekkeaeeerrkilekelee 502
                  r +++  + +e + +eqe ar    e++r le +r a e  r  + e    q  e+lr  ee r    +   l +  k  +ke+e +++   ++ l+e
  KOO23096.1  86 SRTLDQLVRRVE-LAHEQELARAlavERMRALEAQRsAAEAARRAQLEFRHWQAAEKLRLAEERRIELEVRavLGRLfKGVEKEVERREKAAAKQALQE 183
                 444444444444.444777777522245566666662345555555566666677778777765544333311223214456677777788899999** PP

     DUF5401 503 rkqalieeerkrkllekemeerqkai 528
                  +q+++ e+++r +leke   r +a 
  KOO23096.1 184 YRQRVLLEQKQRAVLEKEALLRANAA 209
                 *****99**********988887775 PP

>> Peptidase_M29  Thermophilic metalloprotease (M29)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.0   3.0   5.9e-05      0.53      47     132 ..     105     188 ..      82     197 .. 0.85

  Alignments for each domain:
  == domain 1  score: 9.0 bits;  conditional E-value: 5.9e-05
                    TT-SEEEEEEE-HHHHHHHHHHS-TT-TT---HHHHHHHHHHHHTT-EEEEEE---GGGSTTS-HHHHHHHHHHHHHHHHHHHHHH CS
  Peptidase_M29  47 agakkvvvewsdeeltkerlknaseeqleevpeweaekleelveegaarlsilaedpkllkgvdpekiaaaqkarskalkeyreri 132
                    a a  v+  ++  e +++  + a  +ql e+ +w+a++  +l+ee    l + a   +l+kgv++e   + + a+++al+eyr+r+
     KOO23096.1 105 ARALAVER-MRALEAQRSAAEAARRAQL-EFRHWQAAEKLRLAEERRIELEVRAVLGRLFKGVEKEVERREKAAAKQALQEYRQRV 188
                    44555555.78889999999********.8899******************************99999999999********9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (223 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1113  (0.0620782); expected 358.6 (0.02)
Passed bias filter:                      357  (0.0199119); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.45u 0.21s 00:00:00.66 Elapsed: 00:00:00.39
# Mc/sec: 1718.66
//
Query:       KOO23097.1  [L=279]
Description: tetratricopeptide repeat protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      2e-07   31.5   0.0    4.4e-07   30.5   0.0    1.6  1  Methyltransf_11  Methyltransferase domain
    5.7e-06   26.3   0.3    2.1e-05   24.4   0.3    1.9  1  Methyltransf_23  Methyltransferase domain
    7.1e-05   23.5   0.1    0.00024   21.8   0.0    1.9  2  Methyltransf_12  Methyltransferase domain
     0.0026   18.4   0.1      0.021   15.5   0.0    2.2  2  Methyltransf_25  Methyltransferase domain
     0.0031   17.3   0.0     0.0053   16.6   0.0    1.4  1  Methyltransf_31  Methyltransferase domain
  ------ inclusion threshold ------
      0.036   13.4   0.0      0.067   12.5   0.0    1.3  1  Ubie_methyltran  ubiE/COQ5 methyltransferase family


Domain annotation for each model (and alignments):
>> Methyltransf_11  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.5   0.0   1.5e-10   4.4e-07      38      96 .]      36      95 ..       4      95 .. 0.75

  Alignments for each domain:
  == domain 1  score: 30.5 bits;  conditional E-value: 1.5e-10
                     CCHHT-.EEEETTEECCCT.SS-TT-EEEEEEES-CCC-CCHHHHHHHHHHHEEEEEEEEE CS
  Methyltransf_11 38 aseegl.kvefvvadaekl.pfednsfDlvvssevlhhvedpekalkeiaRvLkpgGllvi 96
                      +++ + +++ vv da+ l +++d+s+D  ++++vl+h++dp  alk + Rv++pgG +++
       KOO23097.1 36 FNGKSVpHID-VVDDAQVLsNVADSSYDGLMAFHVLEHMADPIGALKAWLRVVRPGGCILF 95
                     3333334333.5788888878************************************9875 PP

>> Methyltransf_23  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.4   0.3   7.1e-09   2.1e-05      79     135 ..      57     112 ..      27     235 .. 0.83

  Alignments for each domain:
  == domain 1  score: 24.4 bits;  conditional E-value: 7.1e-09
  Methyltransf_23  79 pqgkfdlIvlrevlehvpdppellrqiatllkpgGylllseplaslkedrllldwly 135
                       + ++d   +++vleh+ dp  +l+   + ++pgG +l+ +p+a ++e++  +  ++
       KOO23097.1  57 ADSSYDGLMAFHVLEHMADPIGALKAWLRVVRPGGCILFAVPDA-CAERQNGDRLRL 112
                      34499999**********************************97.666665555444 PP

>> Methyltransf_12  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.8   0.0     8e-08   0.00024      40      99 .]      31      93 ..      11      93 .. 0.79
   2 ?   -1.7   0.0       1.7   5.1e+03      76      93 ..     220     239 ..     200     243 .. 0.62

  Alignments for each domain:
  == domain 1  score: 21.8 bits;  conditional E-value: 8e-08
  Methyltransf_12 40 lakrennnnnnvelealdlldldgg...ssfDlvvasnvlhhlkdirevldnirklLkpgGrl 99
                     l+k++ n  ++ ++++ d+++  ++   ss+D   a++vl+h++d+  +l+   ++++pgG++
       KOO23097.1 31 LRKNCFNGKSVPHIDVVDDAQVLSNvadSSYDGLMAFHVLEHMADPIGALKAWLRVVRPGGCI 93
                     45555555555555566665555558889********************************86 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 1.7
  Methyltransf_12  76 lhhl..kdirevldnirklL 93 
                      +h++  + +re+l+ +r +L
       KOO23097.1 220 FHAWdvPAMREMLETARPWL 239
                      44444455556665555555 PP

>> Methyltransf_25  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.0   6.9e-06     0.021      51      97 .]      46      91 ..       5      91 .. 0.80
   2 ?    0.3   0.0      0.39   1.2e+03      21      43 ..     217     241 ..     204     267 .. 0.61

  Alignments for each domain:
  == domain 1  score: 15.5 bits;  conditional E-value: 6.9e-06
                     EESBCCGBS.SSTTTEEEEEEESTGGGSSHHHHHHHHHHHHHHEEEEE CS
  Methyltransf_25 51 vqgdaedlp.fedgsfDlvvssgalhhlsdedlekalkeiarvLkpgG 97
                     v+ da+ l+  +d+s+D  +++++l+h+ d     alk + rv++pgG
       KOO23097.1 46 VVDDAQVLSnVADSSYDGLMAFHVLEHMAD--PIGALKAWLRVVRPGG 91
                     5678888874799********877***985..569************9 PP

  == domain 2  score: 0.3 bits;  conditional E-value: 0.39
                      SSEEEEEES..SHHHHHHHHHHHHH CS
  Methyltransf_25  21 kakvtgvDi..seemleaareraee 43 
                      ++++++ D+    emle+ar  ++e
       KOO23097.1 217 QSHFHAWDVpaMREMLETARPWLAE 241
                      4455555542235666666666655 PP

>> Methyltransf_31  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   0.0   1.8e-06    0.0053      63     114 ..      50     100 ..      43     143 .. 0.80

  Alignments for each domain:
  == domain 1  score: 16.6 bits;  conditional E-value: 1.8e-06
  Methyltransf_31  63 ieeleklledekfDlilsnevlnaladpdkileeiervlkpggilliedprl 114
                      ++ l++ ++d+++D ++++ vl ++adp  +l+   rv++pgg +l + p++
       KOO23097.1  50 AQVLSN-VADSSYDGLMAFHVLEHMADPIGALKAWLRVVRPGGCILFAVPDA 100
                      455665.899************************************999883 PP

>> Ubie_methyltran  ubiE/COQ5 methyltransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   2.2e-05     0.067      62     150 ..       6      94 ..       3      99 .. 0.88

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 2.2e-05
                      HHHHHHHHHHHHEEEEEES-HHHHHHHHHHHHHHTSSTEEEEE--TTT-TTS-T-EEEEEEES-GGG-S-HHHHHHHHHHHEEEEEEEE CS
  Ubie_methyltran  62 afklsdsvgekgkvvvlDinenmLkvgekklkeegkinieflqanaeeLpfeddsfDvvtvsfGlrnvtDklkaLkeayrvlkpGGrlv 150
                      + +l d++++k  v+ +D+ ++     ++  + +++ +i+ +       +  d s+D +   + l  ++D   aLk   rv++pGG ++
       KOO23097.1   6 TPHLPDHIKAKVVVHTADFTNDEALLRKNCFNGKSVPHIDVVDDAQVLSNVADSSYDGLMAFHVLEHMADPIGALKAWLRVVRPGGCIL 94 
                      5578899************998888888888999999***9987777778899******99999**********************875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (279 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       298  (0.0166211); expected 358.6 (0.02)
Passed bias filter:                      252  (0.0140554); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.44u 0.23s 00:00:00.67 Elapsed: 00:00:00.40
# Mc/sec: 2113.95
//
Query:       KOO23098.1  [L=444]
Description: glycosyl transferase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.5e-19   69.5   1.4    5.7e-19   68.8   1.4    1.3  1  Glyco_trans_2_3  Glycosyl transferase family group 2
    8.2e-19   68.4   0.0    1.1e-18   68.0   0.0    1.1  1  Glyco_tranf_2_3  Glycosyltransferase like family 2
    1.6e-09   37.5   0.0    2.8e-09   36.7   0.0    1.4  1  Glyco_transf_21  Glycosyl transferase family 21
    3.6e-06   26.9   0.0    5.3e-06   26.3   0.0    1.3  1  Glycos_transf_2  Glycosyl transferase family 2


Domain annotation for each model (and alignments):
>> Glyco_trans_2_3  Glycosyl transferase family group 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   68.8   1.4   1.3e-22   5.7e-19       1     185 [.     101     296 ..     101     330 .. 0.75

  Alignments for each domain:
  == domain 1  score: 68.8 bits;  conditional E-value: 1.3e-22
  Glyco_trans_2_3   1 iilllDaDtvlppdclreiaaelaspevaivqgpvlvmnvanwleelaalffaedhgkdilvrealgrvvpsvGsgaflrrsalqevggwdgde 94 
                      +++l DaD ++++++l+ + a++a + va vqg ++ +   n+++  + ++f   h  + +  + l ++  + Gs+a++r + l++ ++ +   
       KOO23098.1 101 YVALYDADHHPDAHSLLIASAHMAARGVACVQGSTYLRSLPNFMAVYINAEFFVTHFVFFPAMQFLTSFGIFGGSNALWRTAILKAYQFRH--- 191
                      68999*******************99************99****99999999667777767744555555566*******99999998887... PP

  Glyco_trans_2_3  95 ssvsEDfdmglrlqrkG.yrvrfvpeslvkekspltlraalrQrkRwayGcel...eklillvrll................gylgsllwsalp 168
                      +  +ED d ++r    G  ++ f+pe    e  p+t+ + +rQr Rwa+G  +    ++      +                 yl  l w+ l+
       KOO23098.1 192 DVQTEDIDVSIRSSLDGrVKISFCPECRSGELPPRTFNDLYRQRLRWALGW-DqvtLQHM-----RsigsstelncaekagmYYLLPLRWALLL 279
                      9************999989******9999999******************4.33342222.....12233334444444442456666688888 PP

  Glyco_trans_2_3 169 lhlallllfsllalalv 185
                        +a++l+++++a a++
       KOO23098.1 280 SGVANALVAPIVASAWA 296
                      88888888888874432 PP

>> Glyco_tranf_2_3  Glycosyltransferase like family 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   68.0   0.0   2.4e-22   1.1e-18       4     230 .]      11     241 ..       8     241 .. 0.83

  Alignments for each domain:
  == domain 1  score: 68.0 bits;  conditional E-value: 2.4e-22
  Glyco_tranf_2_3   4 lavlVptfneed..vlgevlesll.aqey.prvevvvvv.desdaetlevaeelaaalp...dvrvrvvvnarnlgstgksralnealravksd 89 
                      l+vlVp++  ++   + +++++l+ + ey  +++++v+  +++  +  ++++el        +  v+++   +  gs +k+++ln al  v+++
       KOO23098.1  11 LTVLVPCYLPNEqlIVKSTIAHLIhNLEYsFPFRLIVCYnTPYPIAFEDELRELDGYVYangR-SVQIL---KVEGSSSKAENLNCALLSVDTE 100
                      89******8777668999******55589788******9767886666666666554442104.46655...666999**************** PP

  Glyco_tranf_2_3  90 lvllvDdDtvvePdtlkrllqffltpkvgavgtpvfllnrstlvsalgalefaerhl.rflaarralgvltlnGsgslirrevlkelegldplf 182
                      +v+l D+D   + ++l  + + +++++v++v+++ +l+   ++++++ + ef  +h+  f+a++   ++ +++Gs  l+r+++lk++ +++   
       KOO23098.1 101 YVALYDADHHPDAHSLLIASAHMAARGVACVQGSTYLRSLPNFMAVYINAEFFVTHFvFFPAMQFLTSFGIFGGSNALWRTAILKAY-QFRH-D 192
                      ***********9999777666667***********************66666555552777777777798899**************.8887.9 PP

  Glyco_tranf_2_3 183 lltdDyelglrlrr.agfrtayvpgaavrevfpsslkayikqrnRwvyg 230
                      + t+D++ + r     ++++ ++p+    e+ p+++ ++++qr Rw+ g
       KOO23098.1 193 VQTEDIDVSIRSSLdGRVKISFCPECRSGELPPRTFNDLYRQRLRWALG 241
                      9********999885679999*************************975 PP

>> Glyco_transf_21  Glycosyl transferase family 21
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.7   0.0   6.2e-13   2.8e-09      13     172 ..      81     239 ..      73     240 .. 0.86

  Alignments for each domain:
  == domain 1  score: 36.7 bits;  conditional E-value: 6.2e-13
  Glyco_transf_21  13 vgvnpKvnnllqaleaakydllvisDsdvrvkpdyLeellaaledpkvglVtslpvgsdakg.laaaleaaflntlagvlqa..klsglgfavG 103
                      +g + K  nl++al ++ ++++ + D+d++ +++ L    a+++  +v++V++  +     + +a  + a f+ t+  ++ a  +l  +g+  G
       KOO23098.1  81 EGSSSKAENLNCALLSVDTEYVALYDADHHPDAHSLLIASAHMAARGVACVQGSTYLRSLPNfMAVYINAEFFVTHFVFFPAmqFLTSFGIFGG 174
                      56788***********************************************97775555550555567777788888887776679******* PP

  Glyco_transf_21 104 ksmalrreaLeaiGGfealadeLAeDyalgkllraa.GlkvvlspapiaqtsvprrsslrallaRqlrWa 172
                      +  ++r+++L+a+  f+   d   eD   + + +    +k+ ++p+ +++ ++p  +++ +l+++ lrWa
       KOO23098.1 175 SNALWRTAILKAY-QFRH--DVQTEDIDVSIRSSLDgRVKISFCPE-CRSGELP-PRTFNDLYRQRLRWA 239
                      *************.7777..999*******7776663689999999.6999999.79************8 PP

>> Glycos_transf_2  Glycosyl transferase family 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.3   0.0   1.2e-09   5.3e-06       1     145 [.      12     164 ..      12     187 .. 0.80

  Alignments for each domain:
  == domain 1  score: 26.3 bits;  conditional E-value: 1.2e-09
                      EEEEEES..S-TTTHHHHHHHHHHH.GGCCEEEEEEEEES-.SSCHHHHHGGGCH....C-TTEEEEEESSS-HHHHHHHHHHHH--SSEEEEE CS
  Glycos_transf_2   1 svvipty..Neektlletlesllaq.dpypdfeiivvDDgS.tDetveileelak....edprvrvirreenvGkagalnaglraatgdyilfl 86 
                      +v +p+y  Ne+  ++ t++ l+ + ++   f++iv  +   +   ++ l+el      ++  v +++ e    ka +ln++l  ++++y+++ 
       KOO23098.1  12 TVLVPCYlpNEQLIVKSTIAHLIHNlEYSFPFRLIVCYNTPyPIAFEDELRELDGyvyaNGRSVQILKVEGSSSKAENLNCALLSVDTEYVALY 105
                      5899999556688899999999999988888888888888879999999999988***999999999999999********************* PP

                      ESSEEE-TTHHHHHHHHHHH.TTCEEEEEEEEEECCCCCCCHC-SSEEEECCHCCCCHC CS
  Glycos_transf_2  87 DaDdepdpdwleklvealekdgadvvlgqrprifgetdeiernkrvgenerlyfkerkr 145
                      DaD+ pd   l    +++ + g+++v g+++ ++  ++        ++ +++ f+  ++
       KOO23098.1 106 DADHHPDAHSLLIASAHMAARGVACVQGSTYLRSLPNFMAVYINAEFFVTHFVFFPAMQ 164
                      ******************************99988777666655544555555544444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (444 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       393  (0.0219198); expected 358.6 (0.02)
Passed bias filter:                      298  (0.0166211); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.46u 0.26s 00:00:00.72 Elapsed: 00:00:00.41
# Mc/sec: 3248.04
//
Query:       KOO23099.1  [L=1001]
Description: p80 protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.9e-08   33.3   0.0    5.6e-08   32.4   0.0    1.4  1  AIG1             AIG1 family
    9.8e-08   32.1   0.0      3e-07   30.5   0.0    2.0  1  MMR_HSR1         50S ribosome-binding GTPase
    0.00049   20.2   1.5          1    9.4   0.0    2.8  3  Dynamin_N        Dynamin family
    0.00084   18.5   0.1      0.002   17.2   0.0    1.5  2  IIGP             Interferon-inducible GTPase (IIGP)
  ------ inclusion threshold ------
      0.037   13.9   0.0      0.093   12.6   0.0    1.7  1  RsgA_GTPase      RsgA GTPase
      0.042   13.1   0.0      0.088   12.1   0.0    1.4  1  Septin           Septin
      0.064   13.0   0.0       0.14   12.0   0.0    1.5  1  AAA_29           P-loop containing region of AAA domain
      0.067   11.1   0.0       0.21    9.5   0.0    1.7  2  Herpes_Helicase  Helicase
       0.11   12.4   3.0       0.18   11.7   3.0    1.3  1  DUF4386          Domain of unknown function (DUF4386)
       0.24   11.9   0.1        4.2    7.8   0.0    2.3  2  AAA_23           AAA domain
        1.1    9.5   4.9        2.5    8.4   4.9    1.5  1  OmpH             Outer membrane protein (OmpH-like)
        6.2    7.5  10.4       0.65   10.6   5.3    2.0  2  HIP1_clath_bdg   Clathrin-binding domain of Huntingtin-intera


Domain annotation for each model (and alignments):
>> AIG1  AIG1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.4   0.0   3.8e-11   5.6e-08       2     142 ..     112     256 ..     111     272 .. 0.82

  Alignments for each domain:
  == domain 1  score: 32.4 bits;  conditional E-value: 3.8e-11
                 EEEEESSTTSSHHHHHHHH...HTS--SS--TTTS---SS-EEEEE.EETTEEEEEEE--SCCCTTCCHHCHHHHHHHHHHHCTT-ESEEEEE..EETT CS
        AIG1   2 tivlvGktgnGkSaTgNsi...lgkkaFesklsaqsvtkkcqkksr.twdgkkinViDTPglfdlsvsadkiskeivrclllseegihalllv..lslg 94 
                 ++++vG  g GkS+ +N++    ++   e   sa++vtk+  ++++   +g+ ++  DTPg+ d +v+  k++     +ll   ++i+ +l+   +s g
  KOO23099.1 112 RLLIVGEVGDGKSTMINALrdpTRSGEAEAGRSARGVTKQIMSYVGlPINGHPVELLDTPGVGDKDVTPTKLISMLEARLL---PPIDGVLVTnpISDG 207
                 89****************9666555568888899************899*******************9999987765443...778989888345555 PP

                 B-SHHHHHHHHHHHHHH.CGGGGGGEEEEEEEGGGGTTCCHHHHHHHHH CS
        AIG1  95 rfteedekalktlkelF.Gekilkylivvftrkddleddsledylskss 142
                 r++   + ++  + + F Ge+ + ++i+v t+ d +edd+   +++++ 
  KOO23099.1 208 RVKLGAQVVATIVDKGFvGEEKWANVILVGTKDDRAEDDEQRRFFREDI 256
                 887555555555555555**********************999998654 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.5   0.0     2e-10     3e-07       2      58 ..     113     174 ..     112     284 .. 0.75

  Alignments for each domain:
  == domain 1  score: 30.5 bits;  conditional E-value: 2e-10
                 EEEEESTTSSHHHHHHHHHT...S.TEEESSST.TSSSSE.EEEEEEETTEEEEEEECGGCSS CS
    MMR_HSR1   2 vaivGrpNvGKStLinaltg...e.kaivsdkp.gtTrdi.negrvklkgkeielvDtpGlie 58 
                  +ivG    GKSt+inal +   + +a++++ + g+T++i  +  + ++g+++el+DtpG + 
  KOO23099.1 113 LLIVGEVGDGKSTMINALRDptrSgEAEAGRSArGVTKQImSYVGLPINGHPVELLDTPG-VG 174
                 689***************6533256788855555******5555566999**********.54 PP

>> Dynamin_N  Dynamin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.4   0.0   0.00068         1       2      18 ..     114     130 ..     113     134 .. 0.92
   2 !    9.0   0.0   0.00088       1.3      81     134 ..     143     200 ..     131     210 .. 0.79
   3 ?   -2.6   0.2       3.4   5.1e+03      48      75 ..     342     369 ..     309     392 .. 0.57

  Alignments for each domain:
  == domain 1  score: 9.4 bits;  conditional E-value: 0.00068
                 EEEEBTTTTHHHHHHHH CS
   Dynamin_N   2 avvGsqSsGKSSvlnaL 18 
                 ++vG++ +GKS+++naL
  KOO23099.1 114 LIVGEVGDGKSTMINAL 130
                 79**************9 PP

  == domain 2  score: 9.0 bits;  conditional E-value: 0.00088
                 TSSSS--SS-EEEEEEETTS-SEEEEE---B-SSSGTTS...HHHHHHH.STTEEEEE CS
   Dynamin_N  81 gankgiskkvillkilsllvkgltlvDlPGldsvnkrdq...elvkeyi.kkadiila 134
                 ++  g++k+++++  l+++ + ++l+D+PG+ + ++  +   ++++  +  + d +l+
  KOO23099.1 143 RSARGVTKQIMSYVGLPINGHPVELLDTPGVGDKDVTPTkliSMLEARLlPPIDGVLV 200
                 456889999**********************999998886666666666666666665 PP

  == domain 3  score: -2.6 bits;  conditional E-value: 3.4
                 CS...SSEEEET-EB--CHHHHHHHHHH CS
   Dynamin_N  48 eravkeelkekekkledfsevreeieke 75 
                  r+++++++e + ++  ++e  +e e++
  KOO23099.1 342 RRESEARWNEAQLREARLEEALREAEAR 369
                 3334444444455555555555555555 PP

>> IIGP  Interferon-inducible GTPase (IIGP)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   0.0   1.4e-06     0.002      39     105 ..     114     182 ..     109     189 .. 0.77
   2 ?   -3.9   0.0       3.7   5.5e+03     296     329 ..     308     341 ..     248     351 .. 0.74

  Alignments for each domain:
  == domain 1  score: 17.2 bits;  conditional E-value: 1.4e-06
                 EEEESTTSSHHHHHHHHTT--TTSTTS--SSCHSHHTS-EEEE-..SS-TTEEEEEE--GGGSSSSHHH CS
        IIGP  39 avtGdsGnGkssFinaLRliGheeedsAptGvvettkkrtpYss..skfPnvvlWDLPGlGatafsves 105
                  ++G+ G Gks+ inaLR      e+ A   +  +tk+   Y     +   v+l D PG+G    ++ +
  KOO23099.1 114 LIVGEVGDGKSTMINALRDPTRSGEAEAGRSARGVTKQIMSYVGlpINGHPVELLDTPGVGDKDVTPTK 182
                 689***************987777777777777777777777764223345**********98888765 PP

  == domain 2  score: -3.9 bits;  conditional E-value: 3.7
                 HHHHTTS-HHHHHCTSSGGGTSSTBSSSHHHHHH CS
        IIGP 296 vArdlgaevkdlkaelkslelfkltkddsilerl 329
                 +A+++g++++d++ +l+ +     t+ +  ++rl
  KOO23099.1 308 LAESFGMRMDDFQRQLREERERMRTEYNEEIDRL 341
                 5778888888888888776655555555555555 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   6.2e-05     0.093     100     162 ..     111     174 ..     101     179 .. 0.62

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 6.2e-05
                  SEEEEECSTTSSHHHHHHHHCTT-----S--------------SEEEEEETTTE...EEESS-SSS CS
  RsgA_GTPase 100 ktsvlvGqSGvGKStLinallpelelktgevseklgrGkhTTtavellelaegg...lliDtPGfr 162
                  k  ++vG+ G GKSt+inal+  ++   +e   ++ rG  T +  + + l+ +g    l DtPG+ 
   KOO23099.1 111 KRLLIVGEVGDGKSTMINALRDPTRSGEAE-AGRSARGV-TKQIMSYVGLPINGhpvELLDTPGVG 174
                  56789***************9863332222.23344443.33444444444433111588888876 PP

>> Septin  Septin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   5.9e-05     0.088       7      75 ..     113     176 ..     111     187 .. 0.68

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 5.9e-05
                 EEEEEBTTSSCCCCCCTTSSSS------------------S-EEE.EEEEEETTCEEEEEEEE---BSSS CS
      Septin   7 lmvvGesglGkttlintlfetdlieeekleeasekkkktveikkk.kvvieedgvklnltviDtpgfGda 75 
                 l++vGe g Gk+t+in+l   +   e   e  ++    t +i ++    i+++     + ++Dtpg Gd+
  KOO23099.1 113 LLIVGEVGDGKSTMINALRDPTRSGEA--EAGRSARGVTKQIMSYvGLPINGH----PVELLDTPGVGDK 176
                 89***************9776555543..333333444555554304445555....3456999999996 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0     9e-05      0.14      23      42 ..     112     130 ..      99     132 .. 0.86

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 9e-05
      AAA_29  23 gatlltGpsGsGKSTllDAi 42 
                    l++G+ G GKST++ A+
  KOO23099.1 112 R-LLIVGEVGDGKSTMINAL 130
                 4.89*************997 PP

>> Herpes_Helicase  Helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   0.0   0.00014      0.21      40      80 ..      93     131 ..      76     134 .. 0.81
   2 ?   -1.9   0.0      0.39   5.9e+02     324     395 ..     684     754 ..     677     759 .. 0.75

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 0.00014
  Herpes_Helicase  40 wfrseldleeeeeselslPFsaylitGtAGaGkstsiqala 80 
                      +f++ +   ++e++  +lP + +li G  G Gkst i+al 
       KOO23099.1  93 FFEHYFGALKPEDP--ALPLKRLLIVGEVGDGKSTMINALR 131
                      67777777777777..69********************996 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 0.39
  Herpes_Helicase 324 drfvvPkskilnPaelvgwtRLflsHkEvkaylkkLHeqlklskeeeaklFtlPvvcevklkafeeykeavg 395
                      +rf vP+++   P  + gw  L++s +E +   k+  +  + ++ ++ +l ++ v   + ++++e++ + v+
       KOO23099.1 684 ERFYVPTARHARPRGEDGWDLLWISVNESQL-SKSQKAWNSKTRLTRSELIEVLVRAAIDNQEIEDMPRCVN 754
                      79************************99653.2333333344456677888888888888888888777666 PP

>> DUF4386  Domain of unknown function (DUF4386)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   3.0   0.00012      0.18      39     100 ..       9      70 ..       2      85 .. 0.93

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.00012
     DUF4386  39 anesllrlgllaellmalllvvlavlLypllrrvnpglallaaafrlveaaviavgllrlla 100
                 +++++l+++l+  +++++   v+ ++L ++ r v++ +a+++ + r++ ++++++ ++++l 
  KOO23099.1   9 SHPQQLIIWLISLVVIITGRFVIQAALAVVYRAVQRLWARMSRTARVALTILFLAPVVAWLI 70 
                 7999********************************************************96 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.8   0.0    0.0028       4.2      23      40 ..     114     131 ..     111     150 .. 0.91
   2 ?    1.4   0.1      0.27     4e+02     156     187 ..     317     361 ..     234     373 .. 0.58

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 0.0028
      AAA_23  23 lItGpNGaGKTTildAik 40 
                 lI+G+ G GK+T ++A++
  KOO23099.1 114 LIVGEVGDGKSTMINALR 131
                 8***************97 PP

  == domain 2  score: 1.4 bits;  conditional E-value: 0.27
      AAA_23 156 eelekeleeled.ekkllekl............eqekekekelee 187
                 ++++++l+e+ + ++ + +++            ++++ +e++lee
  KOO23099.1 317 DDFQRQLREERErMRTEYNEEidrlrresearwNEAQLREARLEE 361
                 333333333332233333333222111111122222222223332 PP

>> OmpH  Outer membrane protein (OmpH-like)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.4   4.9    0.0017       2.5      23      86 ..     315     382 ..     300     398 .. 0.62

  Alignments for each domain:
  == domain 1  score: 8.4 bits;  conditional E-value: 0.0017
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTS......-HHHHHH.HHHHHHHHHHHHHHHHHHHHHH CS
        OmpH  23 qlekkfkklqaeleakekelqklqeelqkkakkl.e....keekeqe.lqkkeqelqqkqqqkaqelqkk 86 
                 ++++ +++l++e e++++e+++++++l +++++  +    +e++ +e l++ e++ q++  +   ++ ++
  KOO23099.1 315 RMDDFQRQLREERERMRTEYNEEIDRLRRESEARwNeaqlREARLEEaLREAEARAQRAVGA--AKVVAE 382
                 67888899999999999999999999987777755564443333333466666666653333..333333 PP

>> HIP1_clath_bdg  Clathrin-binding domain of Huntingtin-interacting protein 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   5.3   0.00044      0.65      16      73 ..     318     375 ..     313     396 .. 0.78
   2 ?   -2.3   0.2       4.6   6.8e+03      34      55 ..     427     448 ..     415     465 .. 0.52

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00044
  HIP1_clath_bdg  16 svarqaqeeverekkeleeelerlkeeaerkleeqkeelekLkreleakraelarlks 73 
                        rq +ee er + e +ee++rl++e+e + +e +    +L++ l + +a+ +r+ +
      KOO23099.1 318 DFQRQLREERERMRTEYNEEIDRLRRESEARWNEAQLREARLEEALREAEARAQRAVG 375
                     5679999************************999999999999988888888777644 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 4.6
  HIP1_clath_bdg  34 eelerlkeeaerkleeqkeele 55 
                       l++++++ae+ ++  +++++
      KOO23099.1 427 LALKSVQQDAESDVSVLNFQVQ 448
                     3455555555555543322222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1001 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1131  (0.0630822); expected 358.6 (0.02)
Passed bias filter:                      711  (0.0396564); expected 358.6 (0.02)
Passed Vit filter:                       100  (0.00557756); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.87u 0.30s 00:00:01.17 Elapsed: 00:00:00.46
# Mc/sec: 6583.95
//
Query:       KOO23100.1  [L=224]
Description: aaa-type ATPase family protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    5.5e-27   94.8   0.0    8.3e-27   94.2   0.0    1.3  1  AAA            ATPase family associated with various cellular
  ------ inclusion threshold ------
      0.016   15.6   0.2      0.052   13.9   0.1    1.8  2  AAA_16         AAA ATPase domain
      0.023   15.3   2.0        6.3    7.5   0.1    2.4  2  DUF2285        Uncharacterized conserved protein (DUF2285)
      0.071   12.9   0.0       0.17   11.7   0.0    1.6  1  AAA_lid_3      AAA+ lid domain
       0.48   11.2   4.0       0.41   11.4   1.0    2.3  2  Synthase_beta  ATP synthase F1 beta subunit


Domain annotation for each model (and alignments):
>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   94.2   0.0   2.3e-30   8.3e-27      14     131 ..       2     116 ..       1     117 [. 0.95

  Alignments for each domain:
  == domain 1  score: 94.2 bits;  conditional E-value: 2.3e-30
                 HHHHHHHHHTHEEEEEETTTCSSSSTTHHHHHHHHHHHHHHHTSTSEEEEEETGGGHHHHHTTCCCHHHHHHHHHHHHHHHHTTTSSSTEEEEEEESSG CS
         AAA  14 lakavakelgvefleisgsellskyvgesekkirelfkeakekakpsilfiDEidalaksrsgseseeeervvnqLlteldgvkkkeskvivigatnrp 112
                 +a+  a+ ++ +++   +  l+sk+ ge+e+k++ lf+++++   p++lf+DEidal+++r ++ +e ++r++++Ll+++dg++  ++ v +igatnrp
  KOO23100.1   2 AARLAAEAAELPLVAAPLEALISKWYGEGEQKLATLFARCEQLG-PCVLFLDEIDALGGTRAKEMHEASRRMLSTLLRHMDGLDAGQH-VALIGATNRP 98 
                 6888888899******************************9998.****************************************866.********** PP

                 GGSTHHHHSTTSSEEEETT CS
         AAA 113 dkldpallrgRfdrkieie 131
                 ++ldpal+ +Rfd+++ ++
  KOO23100.1  99 RDLDPALI-SRFDVRVSFP 116
                 ********.******9886 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.1   1.5e-05     0.052     118     168 ..      29      90 ..       2      92 .. 0.73
   2 ?   -0.7   0.0      0.45   1.6e+03      81     107 ..     126     172 ..     102     203 .. 0.50

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 1.5e-05
      AAA_16 118 rllellkrllallsrderplvlvlDdlq........wadeaslqllaaLlrlles...k.pll 168
                    ++l+ l+a++++   p vl+lD+++           eas+ +l++Llr ++    + +++
  KOO23100.1  29 EGEQKLATLFARCEQ-LGPCVLFLDEIDalggtrakEMHEASRRMLSTLLRHMDGldaGqHVA 90 
                 556789999999999.566*********999997777777**********9966444444665 PP

  == domain 2  score: -0.7 bits;  conditional E-value: 0.45
      AAA_16  81 llrqlldeaesaeleawrekleeala....................a 107
                 +++  ++++++++l++  ++ ++  +                    a
  KOO23100.1 126 IFARYARQLDANALSQLGDRATGLSGrdilnvcksaerkwvcsrlrA 172
                 33333333333333333333333333333333334445555555553 PP

>> DUF2285  Uncharacterized conserved protein (DUF2285)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.1   0.2    0.0023       8.1      30      64 ..      59      93 ..      33     101 .. 0.80
   2 ?    7.5   0.1    0.0018       6.3      15      85 ..     106     172 ..     101     175 .. 0.89

  Alignments for each domain:
  == domain 1  score: 7.1 bits;  conditional E-value: 0.0023
     DUF2285 30 laralaltpqqrrrllhlLqalDarlagaslreiA 64
                 +ra+++ + +rr+l +lL+ +D+  ag+    i+
  KOO23100.1 59 GTRAKEMHEASRRMLSTLLRHMDGLDAGQHVALIG 93
                467889999******************98776665 PP

  == domain 2  score: 7.5 bits;  conditional E-value: 0.0018
     DUF2285  15 larlaralagrapgplaralaltpqqrrrllhlLqalDarlagaslreiAevlfgaervaaedWkdsalrs 85 
                 ++r+  +++  ap ++ ra    +++r++ +++L  l  r++g s r+i +v   aer    +W  s lr+
  KOO23100.1 106 ISRFDVRVSFPAPDAAGRASIFARYARQLDANALSQLGDRATGLSGRDILNVCKSAER----KWVCSRLRA 172
                 678888999899999999999****************************999999888....688777775 PP

>> AAA_lid_3  AAA+ lid domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   4.8e-05      0.17       4      26 ..     139     161 ..     135     165 .. 0.90

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 4.8e-05
   AAA_lid_3   4 lkeLAerTeGySGADlaalcreA 26 
                 l++L  r  G SG D+ ++c+ A
  KOO23100.1 139 LSQLGDRATGLSGRDILNVCKSA 161
                 678999999************99 PP

>> Synthase_beta  ATP synthase F1 beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   1.0   0.00012      0.41       2      12 ..      68      78 ..      67      80 .. 0.95
   2 ?   -1.2   0.1      0.97   3.5e+03      31      41 ..     115     125 ..     111     129 .. 0.81

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00012
  Synthase_beta  2 ASRRlLSSLLR 12
                   ASRR+LS+LLR
     KOO23100.1 68 ASRRMLSTLLR 78
                   9*********9 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 0.97
  Synthase_beta  31 lpspssarraS 41 
                     p+p +a raS
     KOO23100.1 115 FPAPDAAGRAS 125
                    57899999999 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (224 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       295  (0.0164538); expected 358.6 (0.02)
Passed bias filter:                      270  (0.0150594); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.39u 0.27s 00:00:00.66 Elapsed: 00:00:00.40
# Mc/sec: 1662.18
//
Query:       KOO23101.1  [L=251]
Description: hypothetical protein Ctob_003085 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (251 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       436  (0.0243181); expected 358.6 (0.02)
Passed bias filter:                      362  (0.0201908); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.41u 0.26s 00:00:00.67 Elapsed: 00:00:00.41
# Mc/sec: 1851.70
//
Query:       KOO23102.1  [L=448]
Description: monogalactosyldiacylglycerol synthase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.2e-23   82.7   0.0      3e-22   79.5   0.0    2.0  1  MGDG_synth       Monogalactosyldiacylglycerol (MGDG) synthase
    1.4e-11   44.6   0.0    2.8e-11   43.7   0.0    1.4  1  Glyco_tran_28_C  Glycosyltransferase family 28 C-terminal dom
  ------ inclusion threshold ------
       0.15   12.5   6.6        2.2    8.7   3.7    3.1  2  Glyco_trans_4_4  Glycosyl transferase 4-like domain


Domain annotation for each model (and alignments):
>> MGDG_synth  Monogalactosyldiacylglycerol (MGDG) synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   79.5   0.0     5e-26     3e-22       1     169 []      38     193 ..      38     193 .. 0.91

  Alignments for each domain:
  == domain 1  score: 79.5 bits;  conditional E-value: 5e-26
                 -HHHHHHHHHHHHHHHGGGEEEEEEE------------.---------------------------------------HHHHHHHHHHH--SEEEE-ST CS
  MGDG_synth   1 Hnqaaealkealkaefgdeyqvlvkdllkelnpfllka.vlksYlflvkvsalyrllyygteekiqkksilaklatflakelaalleeeqPDiiisthp 98 
                 H+++a+al e l +  gd+ ++++ d+++ + p++  + ++ +Y+ l k   l+   ++ ++ k     +++ ++ +  + +++ ++e+ PD++is hp
  KOO23102.1  38 HRASAQALAEVLAQRHGDKVETAIVDVWTLYGPWPFGQeLVPYYRELAKRPLLWWAHFRASSLKPAAYLMSQLMSAVCYRGFEQCIREHAPDVVISMHP 136
                 99*********************************965166779999999999999999999777777777778888888******************* PP

                 TTTHHHHHHHHTTT-TTTSEEEEE---SSS--GGG--TT-SEEEESSHHHHHHHHHCT--GGGEEE--S-- CS
  MGDG_synth  99 lvaelplsvLkskellkrvlvvtvvtDfellhktWlrkeidryyvaskevkkealekGidksnikvtGiPv 169
                 l +++p+               +++tD+++ h++Wl++  d ++v+s+ + k a ++G+ +s+++  G+Pv
  KOO23102.1 137 LCQAVPIK--------------VLLTDLATPHPFWLHPRADLCFVPSDSFHKAATDRGLARSQLRQHGLPV 193
                 *6666443..............468*********************************************9 PP

>> Glyco_tran_28_C  Glycosyltransferase family 28 C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.7   0.0   4.7e-15   2.8e-11       1     165 [.     237     404 ..     237     408 .. 0.83

  Alignments for each domain:
  == domain 1  score: 43.7 bits;  conditional E-value: 4.7e-15
                      -EEEEE-SSSHHHHHCCCTSHHHHHHHH........HHHHCHHHCCT-EEC---STT-TTTT..CEEEEEESSSSHHHHHHHH-EEEECS-CHH CS
  Glyco_tran_28_C   1 tilVtGGSqgaeaLnelvlselkllelk........srelqvlhqtGkreleevkikveelt..lkvevfefidkmaeaikaadLvIsRAGagt 84 
                      t+l +GG  g  +L e v  ++++l+++            q+   +Gk+++  ++ +  + +  l v v+ f+ +m++++ +a+ ++++AG gt
       KOO23102.1 237 TVLLVGGGDGVGKLGEIVHAMAQELAEYnaaggapsWAPAQMAVVCGKNQELCQQLQARDWGphLHVAVVGFTSRMSDYMGVASCIVTKAGPGT 330
                      68999******************************95689*******9966666665444444589**************************** PP

                      HHHHHHTT--EEEE--TT....S-HHHHHHHHHHHHHHSSEEEE-STTCHHHHHHHHCCS---S---SSCH..CHHHHHHH CS
  Glyco_tran_28_C  85 iaEllalgkplIlvplpeaaenhqdnNakelekagaalvleqkeltpekLeeallelaaeklrlaekskasaaskfadlae 165
                      iaE++  g+p  l  +     ++   N + +++ g + +  +    p k+++++   +ae++rla++s+ s  ++ + + e
       KOO23102.1 331 IAEACCSGLPIMLSGYLP---GQESGNVAFVVDGGFGAYASE----PAKIASTVASWLAEPQRLAQMSERSILAARPLATE 404
                      **********99988877...556677777777777655433....67899999999999999999999986666666555 PP

>> Glyco_trans_4_4  Glycosyl transferase 4-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.7   3.7   0.00037       2.2       1     112 [.      36     170 ..      36     192 .. 0.47
   2 ?   -1.9   0.0      0.66   3.9e+03      61      74 ..     286     299 ..     250     315 .. 0.51

  Alignments for each domain:
  == domain 1  score: 8.7 bits;  conditional E-value: 0.00037
  Glyco_trans_4_4   1 gGigryvaelaraLaar.Ghe......Vtvlt.papapgapeleedgvrvh.......rlpvprrp.spladlaal..........ralrrllr 68 
                      gG +  +++la+ La+r G +      V+v+t      g+++  ++ v+++        l++ + + s l+ +a+l          r++++ + 
       KOO23102.1  36 GGHRASAQALAEVLAQRhG-DkvetaiVDVWTlY----GPWPFGQELVPYYrelakrpLLWWAHFRaSSLKPAAYLmsqlmsavcyRGFEQCI- 123
                      6777778888888887723.23445556666632....2222333344444111111112222221122333333355566666667778887. PP

  Glyco_trans_4_4  69 qrrerpdvvhahspt..aglaarlar.rrrgiplvvtlhgll.lrrgs 112
                       r+  pdvv++ +p+  a ++ +l+  +++  p++++++++l +++  
       KOO23102.1 124 -REHAPDVVISMHPLcqAVPIKVLLTdLATPHPFWLHPRADLcFVPSD 170
                      .88888888888865444444444442455677788877533233222 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 0.66
  Glyco_trans_4_4  61 ralrrllrqrrerp 74 
                      + l ++l++r+++p
       KOO23102.1 286 QELCQQLQARDWGP 299
                      22333333333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (448 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       318  (0.0177366); expected 358.6 (0.02)
Passed bias filter:                      277  (0.0154498); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.49u 0.27s 00:00:00.76 Elapsed: 00:00:00.43
# Mc/sec: 3119.61
//
Query:       KOO23103.1  [L=161]
Description: hypothetical protein Ctob_003001 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    9.3e-07   28.8   0.5    9.3e-07   28.8   0.5    1.8  2  Fis1_TPR_C  Fis1 C-terminal tetratricopeptide repeat
    1.7e-05   24.4   0.1    1.7e-05   24.4   0.1    2.4  3  TPR_1       Tetratricopeptide repeat
    3.4e-05   23.6   3.5    6.3e-05   22.8   0.1    2.8  2  TPR_2       Tetratricopeptide repeat
     0.0011   19.0   0.0     0.0011   19.0   0.0    3.1  3  TPR_8       Tetratricopeptide repeat
     0.0042   17.8   0.1     0.0042   17.8   0.1    2.8  2  TPR_14      Tetratricopeptide repeat
  ------ inclusion threshold ------
        3.4    7.4   6.0         58    3.5   3.3    3.5  3  TPR_11      TPR repeat


Domain annotation for each model (and alignments):
>> Fis1_TPR_C  Fis1 C-terminal tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.1       2.5   7.5e+03      36      48 ..      46      59 ..      43      60 .. 0.55
   2 !   28.8   0.5   3.1e-10   9.3e-07       4      47 ..     108     151 ..     106     155 .. 0.93

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 2.5
                HHHHHH.HHHHHHH CS
  Fis1_TPR_C 36 QaqsLk.eliedki 48
                Q +sL  e+i+ ki
  KOO23103.1 46 QLKSLDsEAIQAKI 59
                66666414566655 PP

  == domain 2  score: 28.8 bits;  conditional E-value: 3.1e-10
                 HHHHHHHHHHHT-HHHHHHHHHHHHHHTTS-HHHHHHHHHHHHH CS
  Fis1_TPR_C   4 lYylAlGhyklgeYseArryvdalLeiEPenrQaqsLkeliedk 47 
                  Y lAlGh  +g+ ++A + ++a L++EP+ +Q ++L+e ++++
  KOO23103.1 108 YYRLALGHQGMGNIEKAFKACRAGLKLEPDSMQLLKLQEELQKA 151
                 588************************************99875 PP

>> TPR_1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.1       2.3   6.9e+03      18      27 ..      81      90 ..      81      92 .. 0.71
   2 !   24.4   0.1   5.6e-09   1.7e-05       1      33 [.     105     137 ..     105     138 .. 0.96
   3 ?   -1.9   0.1       1.1   3.4e+03      10      21 ..     141     152 ..     140     153 .. 0.79

  Alignments for each domain:
  == domain 1  score: -2.8 bits;  conditional E-value: 2.3
                HHHHHHHHHH CS
       TPR_1 18 deAleyyekA 27
                d+A++ y  A
  KOO23103.1 81 DKAIAEYTAA 90
                6888877766 PP

  == domain 2  score: 24.4 bits;  conditional E-value: 5.6e-09
                 HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT CS
       TPR_1   1 akalynlGnayfklgkydeAleyyekALelnPn 33 
                 +ka+y+l++ ++ +g+ ++A ++++  L+l+P+
  KOO23103.1 105 VKAYYRLALGHQGMGNIEKAFKACRAGLKLEPD 137
                 58******************************8 PP

  == domain 3  score: -1.9 bits;  conditional E-value: 1.1
                 HHHHTT-HHHHH CS
       TPR_1  10 ayfklgkydeAl 21 
                 ++  ++++++A+
  KOO23103.1 141 LLKLQEELQKAE 152
                 567899999996 PP

>> TPR_2  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.1   0.8      0.46   1.4e+03      18      28 ..      81      91 ..      79      97 .. 0.87
   2 !   22.8   0.1   2.1e-08   6.3e-05       2      33 ..     106     137 ..     105     138 .. 0.96

  Alignments for each domain:
  == domain 1  score: -0.1 bits;  conditional E-value: 0.46
       TPR_2 18 eeAleafekAl 28
                ++A++ + +A+
  KOO23103.1 81 DKAIAEYTAAV 91
                89*****9997 PP

  == domain 2  score: 22.8 bits;  conditional E-value: 2.1e-08
       TPR_2   2 ealynlGlayyklgdyeeAleafekAleldPn 33 
                 +a+y+l+l +  +g+ e+A +a+++ l+l+P+
  KOO23103.1 106 KAYYRLALGHQGMGNIEKAFKACRAGLKLEPD 137
                 79*****************************8 PP

>> TPR_8  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.3       3.8   1.1e+04      16      27 ..      64      75 ..      61      75 .. 0.67
   2 ?    0.6   0.2       0.3   8.9e+02      18      29 ..      81      92 ..      77     103 .. 0.67
   3 !   19.0   0.0   3.7e-07    0.0011       2      33 ..     106     137 ..     105     138 .. 0.96

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 3.8
                -HHHHHHHHHHH CS
       TPR_8 16 dyeeAkeyyeka 27
                + e+ k+++e+a
  KOO23103.1 64 RDEAEKKVLEEA 75
                556677777776 PP

  == domain 2  score: 0.6 bits;  conditional E-value: 0.3
                HHHHHHHHHHHH CS
       TPR_8 18 eeAkeyyekale 29
                ++A++ y  a++
  KOO23103.1 81 DKAIAEYTAAVS 92
                566666666654 PP

  == domain 3  score: 19.0 bits;  conditional E-value: 3.7e-07
                 CHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH CS
       TPR_8   2 eayynlgsiylklgdyeeAkeyyekaleldpd 33 
                 +ayy+l++ ++ +g++e+A ++++  l+l+pd
  KOO23103.1 106 KAYYRLALGHQGMGNIEKAFKACRAGLKLEPD 137
                 89*****************************8 PP

>> TPR_14  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.2   2.6      0.64   1.9e+03      13      30 ..      76      93 ..      52     100 .. 0.67
   2 !   17.8   0.1   1.4e-06    0.0042       2      38 ..     106     142 ..     105     151 .. 0.92

  Alignments for each domain:
  == domain 1  score: 0.2 bits;  conditional E-value: 0.64
      TPR_14 13 alGdpdeAiallrralal 30
                +    d+Aia + +a+++
  KOO23103.1 76 RMAARDKAIAEYTAAVSD 93
                333456777777777765 PP

  == domain 2  score: 17.8 bits;  conditional E-value: 1.4e-06
      TPR_14   2 eallalaeallalGdpdeAiallrralalaPddaeaw 38 
                 +a+++la  +   G+ ++A +++r+ l+l Pd+ +++
  KOO23103.1 106 KAYYRLALGHQGMGNIEKAFKACRAGLKLEPDSMQLL 142
                 79******************************97765 PP

>> TPR_11  TPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.0       1.3     4e+03      19      30 ..      24      35 ..      23      35 .. 0.85
   2 ?    3.5   3.3      0.02        58      19      42 .]      96     119 ..      81     119 .. 0.72
   3 ?    1.9   0.0     0.062   1.9e+02       8      27 ..     119     138 ..     118     142 .. 0.89

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 1.3
      TPR_11 19 kAlkldPdnaea 30
                + l+ dP ++ea
  KOO23103.1 24 QVLQMDPPSPEA 35
                78999**99987 PP

  == domain 2  score: 3.5 bits;  conditional E-value: 0.02
      TPR_11  19 kAlkldPdnaeayynLGlayykqG 42 
                 +A  ld +++ ayy L+l ++ +G
  KOO23103.1  96 EATYLDDTYVKAYYRLALGHQGMG 119
                 67779999******9998666665 PP

  == domain 3  score: 1.9 bits;  conditional E-value: 0.062
      TPR_11   8 GkyeeAieaYkkAlkldPdn 27 
                 G++e+A +a ++ lkl Pd+
  KOO23103.1 119 GNIEKAFKACRAGLKLEPDS 138
                 9999**9999********97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (161 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1332  (0.074293); expected 358.6 (0.02)
Passed bias filter:                      537  (0.0299515); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.43u 0.26s 00:00:00.69 Elapsed: 00:00:00.42
# Mc/sec: 1160.46
//
Query:       KOO23104.1  [L=536]
Description: serine threonine-protein kinase tousled-like 1 isoform 2 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.4e-25   90.2   0.0    1.5e-18   67.1   0.0    2.3  2  Pkinase       Protein kinase domain
      2e-06   27.3   0.0    3.8e-05   23.1   0.0    2.4  2  Pkinase_Tyr   Protein tyrosine kinase
  ------ inclusion threshold ------
       0.17   12.2   7.9        3.8    7.9   0.7    2.8  2  Tup_N         Tup N-terminal


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.1   0.0   2.8e-08   0.00017       4      72 ..     302     375 ..     299     379 .. 0.83
   2 !   67.1   0.0   2.5e-22   1.5e-18     126     264 .]     380     526 ..     378     526 .. 0.85

  Alignments for each domain:
  == domain 1  score: 21.1 bits;  conditional E-value: 2.8e-08
                 EEEEEEESSEEEEEEEETTTTEEEEEEEEECHCHCHHHH.....HHHHHHHHHHHHHSCTTB--EEEEEEESSE CS
     Pkinase   4 leklGeGsfGkVykaveketgkivAvKkikkekakkkke.....kkvlrEikilkklkhpnivrlyevfeekde 72 
                 l  + +G+f++V+k+++ +t++  A+K     ++   ++     ++v rEi i    +h++iv+ + vfe + +
  KOO23104.1 302 LDLIARGGFSSVFKVYDLKTHCYTACKLHHIAQEWGAQRkeafvRHVEREIDITVDARHRRIVQTFAVFELNAN 375
                 567889*********************766655543333347899***********************997766 PP

  == domain 2  score: 67.1 bits;  conditional E-value: 2.5e-22
                 GGGEEEETTTEEEE-SGTTSEESSSSCS............BCTTTSCGGGS-HHHH..TTSCBSHHHHHHHHHHHHHHHHHS.S-STTTSSHHHHHHHH CS
     Pkinase 126 peNiLidekgelKitDFGlakelesssk............ltsfvgtseYlAPEvl..keneyskkvDvWslGvilyelltg.kppfsgekgkekveke 209
                 p+NiL++ +ge+K++DFGl+k +                 ++   gt+ Yl+PE    +++++ +kvDv+s+Gv+ + +l+    pf  + +++    +
  KOO23104.1 380 PANILFH-DGEVKLSDFGLSKVMAPAAGgsgapthgsielTSYGSGTHGYLPPECYegDASRVCPKVDVFSAGVVHFVMLFHpLKPFFRTASQQ----Q 473
                 89*****.****************9888999********888889***********7666888*************999987334666233322....3 PP

                 HHTHHHHHHHCTSHH...HHHTTS-HHHHHHHHHHT-SSGCCSTTHHHHHTSGGG CS
     Pkinase 210 ldqlekilkilgetkeklpeaseiseeakdllkkllkkdpkkRltaeellqhpyl 264
                 + q  +  + ++e++ +l+ +s+is ea+ +l++ l+ ++++R +++ell++py+
  KOO23104.1 474 ILQ--MKPHAIREETGQLDFPSKISAEAQAFLRRTLASKREERGSVRELLADPYM 526
                 444..22334456688999**********************************97 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.4   0.0     0.026   1.5e+02       5      73 ..     303     373 ..     299     379 .. 0.65
   2 !   23.1   0.0   6.3e-09   3.8e-05     132     256 ..     381     521 ..     378     523 .. 0.76

  Alignments for each domain:
  == domain 1  score: 1.4 bits;  conditional E-value: 0.026
                  EEEEEESSEEEEEEEEETTTTSSEEEEEEEEESTTSSHHHHHHHHH....HHHHHHTS-BTTB--EEEEEESS CS
  Pkinase_Tyr   5 kklGeGafGkVvegtlkgekekkevkVavKtlkeeateeekeelle....eakimkklkhpnivkllgvctke 73 
                  + +++G f++V++ +    k++  + + +  + +e  +++ke++++    e++i  + +h++iv+  +v   +
   KOO23104.1 303 DLIARGGFSSVFKVYDL--KTHCYTACKLHHIAQEWGAQRKEAFVRhverEIDITVDARHRRIVQTFAVFELN 373
                  56788888888887766..333333344444566666666666654333389999999*******99998744 PP

  == domain 2  score: 23.1 bits;  conditional E-value: 6.3e-09
                  GGEEEEETTEEEE-STTTHEETTTSSEE.........EETTSSTSGGGGS-HHHHHHSE..EEHHHHHHHHHHHHHHHHTTSSGTTTTS.HHHHHHHH CS
  Pkinase_Tyr 132 rNvLlsenkvvkisDfGLardiekddey.........vkkeeaklpvkWmapEslkekk..ftsksDvWsfGvllwEiftlgespypgl.kneevlek 217
                   N+L + +  vk+sDfGL++ +               + ++ +     +++pE+ +     +  k Dv+s Gv+ + ++ +  +p+ +  +++++l++
   KOO23104.1 381 ANILFH-DGEVKLSDFGLSKVMAPAAGGsgapthgsiELTSYGSGTHGYLPPECYEGDAsrVCPKVDVFSAGVVHFVMLFHPLKPFFRTaSQQQILQM 477
                  588888.789**********995433222222222223444455667899*****976645889*********************8777566665543 PP

                  ....H.HTTEES-BBTTSBHHHHHHHHHHT-SSGGGS--HHHHH CS
  Pkinase_Tyr 218 ....l.kegkrlekpekcpeelyelmkkcweedpeeRptfselv 256
                      + +e  +l+ p+k+++e + ++++ ++++ eeR + +el+
   KOO23104.1 478 kphaIrEETGQLDFPSKISAEAQAFLRRTLASKREERGSVRELL 521
                  22225578889***************************999986 PP

>> Tup_N  Tup N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.2   1.4     0.001       6.2      20      71 ..      26      77 ..       8      84 .. 0.88
   2 ?    7.9   0.7   0.00064       3.8      15      46 ..     214     245 ..     201     255 .. 0.86

  Alignments for each domain:
  == domain 1  score: 7.2 bits;  conditional E-value: 0.001
       Tup_N 20 asslkaqkdeyelkiqsqiqElqqirqtlyeLeeahrkikqqYEeeiarLka 71
                a+     + e++l +++  +El++ r  +  + e+  +++++ E e +rL +
  KOO23104.1 26 AEAAARAQAELDLEVAQARNELEAERAVVAGMREELAEVRTTQEAERERLSR 77
                556667899*************************************999965 PP

  == domain 2  score: 7.9 bits;  conditional E-value: 0.00064
       Tup_N  15 alsqeasslkaqkdeyelkiqsqiqElqqirq 46 
                  l++e++ l+a++  +e+   ++  Elq +r 
  KOO23104.1 214 LLAKELKELQAERRQLEREADEHFHELQLMRD 245
                 6899**************************95 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (536 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1368  (0.076301); expected 358.6 (0.02)
Passed bias filter:                      618  (0.0344693); expected 358.6 (0.02)
Passed Vit filter:                        68  (0.00379274); expected 17.9 (0.001)
Passed Fwd filter:                        16  (0.000892409); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.69u 0.34s 00:00:01.03 Elapsed: 00:00:00.48
# Mc/sec: 3390.48
//
Query:       KOO23105.1  [L=338]
Description: sterol desaturase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    7.9e-22   78.0  18.8    8.9e-22   77.9  15.9    2.2  2  FA_hydroxylase  Fatty acid hydroxylase superfamily


Domain annotation for each model (and alignments):
>> FA_hydroxylase  Fatty acid hydroxylase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.3   0.0     0.047   8.4e+02      42      79 ..       6      44 ..       3      62 .. 0.76
   2 !   77.9  15.9   4.9e-26   8.9e-22       2     133 .]     174     301 ..     173     301 .. 0.84

  Alignments for each domain:
  == domain 1  score: 0.3 bits;  conditional E-value: 0.047
  FA_hydroxylase 42 laalrahplealllallllllllllg.plsalllvlvla 79
                    +   +a plea ++ ++ ++++ + g +++a+l+ l++a
      KOO23105.1  6 WEEASADPLEAACACFTNFFMISMCGnSPVAWLVALFFA 44
                    667788899999999999999999996666666544443 PP

  == domain 2  score: 77.9 bits;  conditional E-value: 4.9e-26
  FA_hydroxylase   2 llallledfveYwvHrllHrvkllwrrlHkvHHsseaptalaalrahplealllallllllllllg.plsalllvlvlaallel.liHsglhvsl 94 
                     +++ll++++++++vH +lH+ + l++r+Hk+HH+++ap alaa++ahp+e ++++l+ + + +++  p   ++++++++a+l +  +Hsg  ++l
      KOO23105.1 174 VAHLLVNEVLFFYVHWALHKGS-LYKRIHKIHHEFTAPFALAAVHAHPIELIVADLIPFTAGFVVFrPHIFFVFMWIIGACLGTqTHHSG--YRL 265
                     7899***************965.********************************66665555555255555556666666666166666..9** PP

  FA_hydroxylase  95 gwllerllatpraHrlHHskneegnfgvllslwDrlfgT 133
                     +w+   +  +p +H++HH k++ + +g+ ++++D ++gT
      KOO23105.1 266 PWIA-GFDEQPDFHDFHHGKFN-CCYGN-IGWLDAMHGT 301
                     ***6.669**************.*****.7********9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (338 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       655  (0.036533); expected 358.6 (0.02)
Passed bias filter:                      478  (0.0266607); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.27s 00:00:00.74 Elapsed: 00:00:00.42
# Mc/sec: 2410.06
//
Query:       KOO23106.1  [L=1013]
Description: f-box only protein 11-like protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.5e-97  322.6  35.7    1.4e-19   70.5   1.5    7.0  7  Beta_helix  Right handed beta helix region
    6.2e-72  241.8   8.5      1e-15   57.7   2.2    8.1  8  NosD        Periplasmic copper-binding protein (NosD)


Domain annotation for each model (and alignments):
>> Beta_helix  Right handed beta helix region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.9   0.1   1.7e-21   1.5e-17       5     148 ..       4     146 ..       2     150 .. 0.91
   2 !   67.3   0.6   1.5e-22   1.3e-18      28     157 ..     142     269 ..     137     270 .. 0.92
   3 !   59.6   0.1   3.6e-20   3.2e-16      11     158 .]     315     459 ..     307     464 .. 0.70
   4 !   45.8   2.3     6e-16   5.4e-12       6     145 ..     378     533 ..     374     534 .. 0.92
   5 !   53.3   7.5   3.1e-18   2.8e-14       2     156 ..     443     612 ..     443     614 .. 0.92
   6 !   33.9   0.2   2.9e-12   2.6e-08      55     145 ..     675     764 ..     660     769 .. 0.91
   7 !   70.5   1.5   1.6e-23   1.4e-19       2     157 ..     760     913 ..     759     918 .. 0.95

  Alignments for each domain:
  == domain 1  score: 63.9 bits;  conditional E-value: 1.7e-21
                 E-SS-E.EEESEEEES-SS-SEEE-SSS-...EEES-EEES-SS-SEEE-TT-S-EEES-EEE---SEEE-TT--S--EEES-EEES-SS-SEE-TT-S CS
  Beta_helix   5 ingssnvtiknntisnsggyGiylrgssn..vvienneiannsgsGiyilgssnntisnntisdnngggialfgasnnlienneitdnggsGiylnyss 101
                 ++g+++v i+n ++s+  ++G  ++g+++  ++++ n i+++ + G+y++ ++++ti++n++++n g gi +++    l+++n+i+  +++G+  + + 
  KOO23106.1   4 CSGCTSVLIDNTIVSH-RKAGCLIYGTRThpTLLR-NLIEHSEQAGVYLYAGAKATIEDNEVRGNAGPGILITEKADPLVQRNDIHSGDDAGVLAHEQG 100
                 6789998888888888.899999999999855555.************************************************************999 PP

                 --EEES-EEESTT--SEE---TT---EEES-EEES-SSEEEE-TT-S CS
  Beta_helix 102 nntienNiidnnagsGividdsssnvtvtnNtitnnkgaGiavvgss 148
                   t+ +N+++nn+  G+v+  ++ +++v+ N++++ ++ G+ v +++
  KOO23106.1 101 LGTVLHNNVYNNRTFGVVVLTGG-RTVVRANWLHGRRQGGLLVDEGG 146
                 9**********************.9999********99999777665 PP

  == domain 2  score: 67.3 bits;  conditional E-value: 1.5e-22
                 E-SSS-..EEES-EEES-SS-SEEE-TT-S-EEES-EEE---SEEE-TT--S--EEES-EEES-SS-SEE-TT-S--EEES-EEESTT--SEE---TT- CS
  Beta_helix  28 lrgssn.vvienneiannsgsGiyilgssnntisnntisdnngggialfgasnnlienneitdnggsGiylnyssnntienNiidnnagsGividdsss 125
                 +++++   v+e n+i++n+  Gi ++g++   i++n+++++ + gi+++++ + +ie n++++n+ +Gi ++      i++N+i+n +++G ++ d++ 
  KOO23106.1 142 VDEGGMpEVFE-NDIEGNTKAGIMLRGACTPHIHHNKVHHGRDAGIHCTEGAGGTIEENDVYENEHAGIGVEKGAAPLIRRNRIYNGKQAGAFYFDGG- 238
                 55555523455.**************************************************************************************. PP

                 --EEES-EEES-SSEEEE-TT-SS--EEES-E CS
  Beta_helix 126 nvtvtnNtitnnkgaGiavvgsssnvtvrnNt 157
                   t++ N + +n  aG+++++ s+   v +N+
  KOO23106.1 239 LGTFEENEVWGNEEAGVQIIEASD-PLVQRNQ 269
                 8899******************99.8888876 PP

  == domain 3  score: 59.6 bits;  conditional E-value: 3.6e-20
                 .EEESEEEES-SS-SEEE-SSS-.EEES-EEES-SS-SEEE-TT-S-EEES-EEE---SEEE-TT--S--EEES-EEES-SS-SEE-TT-S--EEES-E CS
  Beta_helix  11 vtiknntisnsggyGiylrgssnvvienneiannsgsGiyilgssnntisnntisdnngggialfgasnnlienneitdnggsGiylnyssnntienNi 109
                   +++n+i++s ++G+ ++++ + ++++n+i+nn+ sG+ i+ ++   + +n +++n+ +g+ + +    ++++n+i++ +  G++++   +   e+N 
  KOO23106.1 315 GDVRDNDIYESDWHGVAIGSQATPLLQRNRIHNNRRSGVFIEDGAAPFLLENDVHHNW-VGVEVIEHAEPTLRGNKIHHMRLGGLWVYKEARGLYEGNE 412
                 369999999999******9999999999999999999999999977777777777777.6666666666666666666666666666666666666666 PP

                 EESTT--SEE---TT---EEES-EEES-SSEEEE-TT-SS--EEES-E. CS
  Beta_helix 110 idnnagsGividdsssnvtvtnNtitnnkgaGiavvgsssnvtvrnNti 158
                 i +na++G+ + + + + t ++N+i++ k +G+ +v+ +++ +++ N i
  KOO23106.1 413 ICHNAKAGVRVWALG-DPTLQGNKIHSGKTCGV-LVYECGKGHFVDNDI 459
                 666666666666666.55566666666666666.444444466655543 PP

  == domain 4  score: 45.8 bits;  conditional E-value: 6e-16
                 -SS-E.EEESEEEES-SS-SEEE-SSS-.EEES-EEES-SS-SEEE-TT-S-EEES-EEE---SEEE-TT--S--EEES-EEES-SS-SEE-TT-S--E CS
  Beta_helix   6 ngssnvtiknntisnsggyGiylrgssnvvienneiannsgsGiyilgssnntisnntisdnngggialfgasnnlienneitdnggsGiylnyssnnt 104
                     + t+++n+i+++   G++++   + + e+nei +n   G+++    + t+++n+i+ ++  g+ +++ ++  + +n+i++ +++ ++++      
  KOO23106.1 378 IEHAEPTLRGNKIHHMRLGGLWVYKEARGLYEGNEICHNAKAGVRVWALGDPTLQGNKIHSGKTCGVLVYECGKGHFVDNDIYNHKEWNVEVKRFATPL 476
                 4555569***************************************************************************************99999 PP

                 EES-EEESTT........--SEE---TT........---EEES-EEES-SSEEEE-T CS
  Beta_helix 105 ienNiidnna........gsGividdss........snvtvtnNtitnnkgaGiavv 145
                 +e+N+i++          g Gi    s+        +++t +nN i+ n g+G+ + 
  KOO23106.1 477 FEKNRIYGAHmggvychgGGGIGAFTSDftnrdsaiTRFTLQNNDIYANFGVGVSIG 533
                 ******99998888899977777777778899999******************9875 PP

  == domain 5  score: 53.3 bits;  conditional E-value: 3.1e-18
                 SEEE-SS-E.EEESEEEES-SS-SEEE-SSS-.EEES-EEES-SS-SEEE-TT.................-S-EEES-EEE---SEEE-TT--S--EEE CS
  Beta_helix   2 gisingssnvtiknntisnsggyGiylrgssnvvienneiannsgsGiyilgs.................snntisnntisdnngggialfgasnnlie 83 
                 g++++ ++   + +n+i+n +   + ++   + ++e+n+i++  + G+y +g+                 +++t++nn i+ n g+g+ + + +  +i+
  KOO23106.1 443 GVLVYECGKGHFVDNDIYNHKEWNVEVKRFATPLFEKNRIYGAHMGGVYCHGGggigaftsdftnrdsaiTRFTLQNNDIYANFGVGVSIGNDGVPVIK 541
                 78899999999*******************************8888888888888888888************************************** PP

                 S-EEES-SS-SEE-T.T-S--EEES-EEESTT--SEE---TT---EEES-EEES-SSEEEE-TT-SS--EEES- CS
  Beta_helix  84 nneitdnggsGiyln.yssnntienNiidnnagsGividdsssnvtvtnNtitnnkgaGiavvgsssnvtvrnN 156
                 +n+++   ++ iy+  +  + ti++N i++n+ +Giv+++++    v+ N+i++    G+ +v  +++  +++N
  KOO23106.1 542 GNRFYGGQTAAIYVAgDKAQGTITDNEIYENK-DGIVLREGA-MPHVERNSIHHQTRRGV-IVCAKGQGMLVEN 612
                 ***************88***************.*********.8888*************.7777776666666 PP

  == domain 6  score: 33.9 bits;  conditional E-value: 2.9e-12
                 -S-EEES-EEE---SEEE-TT--S--EEES-EEES-SS-SEE-TT-S--EEES-EEESTT--SEE---TT---EEES-EEES-SSEEEE-T CS
  Beta_helix  55 snntisnntisdnngggialfgasnnlienneitdnggsGiylnyssnntienNiidnnagsGividdsssnvtvtnNtitnnkgaGiavv 145
                 + + +++n+  +++ g ++l + s+  +++n i++++g+G+ +    +  +++N+i+ +a++G+++++++ + +++ N+i+++++aG+ + 
  KOO23106.1 675 TSVHFRHNRLVGGGLGSVYLADYSKGYLKGNSISECSGTGVVVGVGADPEVSDNVISTCAQYGLHVHPGG-RGRFQANKISQSASAGVCIE 764
                 67778999999999999**************************99*************************.999*************9765 PP

  == domain 7  score: 70.5 bits;  conditional E-value: 1.6e-23
                 SEEE-SS-E.EEESEEEES-SS-SEEE-SSS-.EEES-EEES-SS-SEEE-TT-S-EEES-EEE---SEEE-TT--S--EEES-EEES-SS-SEE-TT- CS
  Beta_helix   2 gisingssnvtiknntisnsggyGiylrgssnvvienneiannsgsGiyilgssnntisnntisdnngggialfgasnnlienneitdnggsGiylnys 100
                 g+ i+ + +  ++ n+i ++  +G+ +r +  ++++ n++ +n++sGi+i g s +++++n  ++n+g g+ +++as  ++ nne+++ng++G+ l   
  KOO23106.1 760 GVCIEAEATSDLRANDIFDNDEQGLLIRMGALCRVTANTMRGNGTSGIEIDGESLCQLRDNDLYGNKGCGLLVRAASELVVANNEMRENGSAGVLLVEG 858
                 66677777777**************************************************************************************** PP

                 S--EEES-EEESTT--SEE---TT---EEES-EEES-SSEEEE-TT-SS--EEES-E CS
  Beta_helix 101 snntienNiidnnagsGividdsssnvtvtnNtitnnkgaGiavvgsssnvtvrnNt 157
                  n  + +N +++n+ +G+  ++++ + + + N+i  n+  Gi+   ++s  t+ +N+
  KOO23106.1 859 ANPLLAKNLVRHNGTNGVRCESGA-KGRLERNVIEENGASGIYAELGCS-PTIGENS 913
                 ************************.9999**************999999.7777775 PP

>> NosD  Periplasmic copper-binding protein (NosD)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.4   0.0   5.1e-15   4.6e-11      68     173 ..       7     113 ..       3     115 .. 0.90
   2 !   41.9   0.2   7.5e-15   6.8e-11      51     172 ..     105     226 ..     102     232 .. 0.89
   3 !   10.1   0.0   3.9e-05      0.35      63     123 ..     209     270 ..     208     276 .. 0.80
   4 !   24.2   0.0   1.9e-09   1.7e-05      72     147 ..     316     392 ..     304     397 .. 0.91
   5 !   26.5   0.0   3.8e-10   3.4e-06      55     154 ..     367     468 ..     365     498 .. 0.69
   6 !   31.5   1.6   1.1e-11   9.9e-08      49     151 ..     515     620 ..     477     628 .. 0.80
   7 !   27.4   0.0   2.1e-10   1.9e-06      72     175 ..     678     782 ..     659     785 .. 0.76
   8 !   57.7   2.2   1.1e-19     1e-15       6     169 ..     754     914 ..     750     922 .. 0.88

  Alignments for each domain:
  == domain 1  score: 42.4 bits;  conditional E-value: 5.1e-15
        NosD  68 sesntiedntlssnesGialmsssnn.tlenNtisnnenyGillsdssnntisnNtis.nnnkGiflensssntitgNriesnqkiGilllsssegnti 164
                 + s+ i + ++s+ ++G +++ ++   tl  N i ++e++G++l + ++ ti++N++  n + Gi ++++ +  +++N i s ++ G+l ++++ g  +
  KOO23106.1   7 CTSVLIDNTIVSHRKAGCLIYGTRTHpTLLRNLIEHSEQAGVYLYAGAKATIEDNEVRgNAGPGILITEKADPLVQRNDIHSGDDAGVLAHEQGLGTVL 105
                 556677777777777*********999**************************************************************9999988888 PP

        NosD 165 ynNyFinns 173
                 +nN   nn+
  KOO23106.1 106 HNNVY-NNR 113
                 88887.776 PP

  == domain 2  score: 41.9 bits;  conditional E-value: 7.5e-15
        NosD  51 itgntienlryGihlensesntiedntlssnesGialmsssnn.tlenNtisnnenyGillsdssnntisnNtis.nnnkGiflensssntitgNries 147
                 + +n+++n + G+++ +  +++++ n+l + ++G +l ++ +   +  N i +n+++Gi+l+++    i +N++    ++Gi+ ++  + ti++N +++
  KOO23106.1 105 LHNNVYNNRTFGVVVLTGGRTVVRANWLHGRRQGGLLVDEGGMpEVFENDIEGNTKAGIMLRGACTPHIHHNKVHhGRDAGIHCTEGAGGTIEENDVYE 203
                 457788888***********************888777777788******************************99*********************** PP

        NosD 148 nqkiGilllsssegntiynNyFinn 172
                 n+  Gi  ++++   +i +N    n
  KOO23106.1 204 NEHAGIG-VEKGAAPLIRRNRI-YN 226
                 *******.88887777777776.44 PP

  == domain 3  score: 10.1 bits;  conditional E-value: 3.9e-05
        NosD  63 ihlensesntiedntlssnesGialmsssnn.tlenNtisnnenyGillsdssnntisnNti 123
                 i +e+     i+ n +++ +++ a++   +  t+e N++++ne++G+ + ++s+  +++N+ 
  KOO23106.1 209 IGVEKGAAPLIRRNRIYNGKQAGAFYFDGGLgTFEENEVWGNEEAGVQIIEASDPLVQRNQL 270
                 55666666679999999999888888888888999999999999999999999888888876 PP

  == domain 4  score: 24.2 bits;  conditional E-value: 1.9e-09
        NosD  72 tiedntlssne.sGialmsssnntlenNtisnnenyGillsdssnntisnNtisnnnkGiflensssntitgNries 147
                  ++dn +++++  G+a+ s+    l+ N+i nn++ G++++d +   + +N +  n  G+ + +  + t++gN+i  
  KOO23106.1 316 DVRDNDIYESDwHGVAIGSQATPLLQRNRIHNNRRSGVFIEDGAAPFLLENDVHHNWVGVEVIEHAEPTLRGNKIHH 392
                 589999998888*********88***************************************************976 PP

  == domain 5  score: 26.5 bits;  conditional E-value: 3.8e-10
        NosD  55 tienlryGihlensesntiedntlssne.sGialmsssnntlenNtisnnenyGillsdssnntisnNtis.nnnkGiflensssntitgNriesnqki 151
                  ++++  G+ + +  + t+++n++ +++  G++++++ +   e+N+i +n ++G+ + +  + t+++N+i   +  G+ +++  +  + +N i++++++
  KOO23106.1 367 DVHHNWVGVEVIEHAEPTLRGNKIHHMRlGGLWVYKEARGLYEGNEICHNAKAGVRVWALGDPTLQGNKIHsGKTCGVLVYECGKGHFVDNDIYNHKEW 465
                 455555666666666677777777777777777777777777777777777777777777777777777766777777777777777777777777666 PP

        NosD 152 Gil 154
                  + 
  KOO23106.1 466 NVE 468
                 555 PP

  == domain 6  score: 31.5 bits;  conditional E-value: 1.1e-11
        NosD  49 ntitgntienl.ryGihlensesntiedntlssne.sGialmsssnn.tlenNtisnnenyGillsdssnntisnNtis.nnnkGiflensssntitgN 143
                 +t+++n i  +   G+ + n    +i++n +++ + ++i++   +++ t+++N+i +n++ Gi l++ +   +++N i  ++ +G+ + ++ +  + +N
  KOO23106.1 515 FTLQNNDIYANfGVGVSIGNDGVPVIKGNRFYGGQtAAIYVAGDKAQgTITDNEIYENKD-GIVLREGAMPHVERNSIHhQTRRGVIVCAKGQGMLVEN 612
                 334444333335678888888889999999999888999999999888999999999999.99999999999999999999999999999999999999 PP

        NosD 144 riesnqki 151
                 +i+ ++++
  KOO23106.1 613 EISHSGTY 620
                 99988655 PP

  == domain 7  score: 27.4 bits;  conditional E-value: 2.1e-10
        NosD  72 tiedntlssne.sGialmsssnntlenNtisnnenyGillsdssnntisnNtis.nnnkGiflensssntitgNriesnqkiGilllsssegntiynNy 168
                   + n l + +   ++l + s+  l++N is++++ G+ +   ++ ++s+N+is   ++G+++    + +++ N+i+++ + G++ +++  +  +  N+
  KOO23106.1 678 HFRHNRLVGGGlGSVYLADYSKGYLKGNSISECSGTGVVVGVGADPEVSDNVIStCAQYGLHVHPGGRGRFQANKISQSASAGVC-IEAEATSDLRAND 775
                 5556666666656677877787899999999999999999999999999999998888999999999999999999999999999.5555555555555 PP

        NosD 169 Finnsen 175
                  ++n e+
  KOO23106.1 776 IFDNDEQ 782
                 5577665 PP

  == domain 8  score: 57.7 bits;  conditional E-value: 1.1e-19
        NosD   6 sgdevlvsargngiqlensegseisnneisnsrdgi.lldnssnntitgntienl.ryGihlensesntiedntlssne.sGialmsssnntlenNtis 101
                 s+++       +g+ +e +  s+++ n+i ++ ++  l+     +++t nt++ + ++Gi +++ + + ++dn l++n+ +G+++   s+ ++ nN+++
  KOO23106.1 754 SQSA------SAGVCIEAEATSDLRANDIFDNDEQGlLIRMGALCRVTANTMRGNgTSGIEIDGESLCQLRDNDLYGNKgCGLLVRAASELVVANNEMR 846
                 4444......47999999999999888887665555499**************999******************************************* PP

        NosD 102 nnenyGillsdssnntisnNtis.nnnkGiflensssntitgNriesnqkiGilllsssegntiynNyF 169
                 +n  +G+ll + +n  +++N +  n  +G++ e+  + ++++N ie+n+  Gi+  + + + ti +N+ 
  KOO23106.1 847 ENGSAGVLLVEGANPLLAKNLVRhNGTNGVRCESGAKGRLERNVIEENGASGIY-AELGCSPTIGENSV 914
                 **********************99******************************.66555666666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1013 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       546  (0.0304535); expected 358.6 (0.02)
Passed bias filter:                      386  (0.0215294); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.75u 0.28s 00:00:01.03 Elapsed: 00:00:00.44
# Mc/sec: 6958.33
//
Query:       KOO23107.1  [L=498]
Description: hypothetical protein Ctob_003004 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.22   11.8   3.2       0.35   11.1   3.2    1.2  1  RskA      Anti-sigma-K factor rskA


Domain annotation for each model (and alignments):
>> RskA  Anti-sigma-K factor rskA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   3.2     2e-05      0.35      33      85 ..      19      86 ..       4     106 .. 0.66

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 2e-05
                ..........XXXXXXXXXXXXXX.......................XXXXXXXX..XXXXXXXXXXX CS
        RskA 33 aaapaararrlaaaaAaalllvlg.............qlavasaaldplrqsaaq..aeavvavlaap 85
                +aa+aar+r+l++aaAaa+++++g              +a+a++ l++l ++a++  ++++ +++ +p
  KOO23107.1 19 TAASAARPRALVGAAAAAVGIAAGytgyaneclkieiDDATAKKLLAALSTAAPAakGPRYNELMPSP 86
                33344444459999999*******88888888888886666666666555555443366677776666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (498 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       458  (0.0255452); expected 358.6 (0.02)
Passed bias filter:                      395  (0.0220313); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.50u 0.23s 00:00:00.73 Elapsed: 00:00:00.38
# Mc/sec: 3953.58
//
Query:       KOO23108.1  [L=393]
Description: fructose-bisphosphate aldolase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
   3.1e-150  499.8   0.0   3.5e-150  499.6   0.0    1.0  1  Glycolytic  Fructose-bisphosphate aldolase class-I


Domain annotation for each model (and alignments):
>> Glycolytic  Fructose-bisphosphate aldolase class-I
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  499.6   0.0  1.9e-154  3.5e-150       1     349 []      44     393 .]      44     393 .] 0.99

  Alignments for each domain:
  == domain 1  score: 499.6 bits;  conditional E-value: 1.9e-154
                 HHHHHHHHHT-TT-EEEEE---HHHHHHHHHCTT----HHHHHHHHHHHHT-TT.GGGTEEEEEE-HHHHT-B-TTS-BHHHHHHHTT-EEEEE----E CS
  Glycolytic   1 ELaetakaivapGkGiLaaDestgtigkrlasigventeenrrayrelLfttdkeleeyisGvilfeetlyqkaddgkplvellkekgiipGiKvdkgv 99 
                 EL++ta+a+va+GkG+La+Destgt+gkrl++ g+ente+nr a+r+lLftt + l+e+isG+il+eetl+q++ +gkp+v++l+++giipGiKvd g+
  KOO23108.1  44 ELRKTANAMVAKGKGLLACDESTGTVGKRLEANGMENTEANRCAWRNLLFTTAG-LGEFISGAILYEETLFQNDPNGKPFVDVLNANGIIPGIKVDVGL 141
                 9*****************************************************.******************************************** PP

                 EE-TTSS.S-EEE---TTHHHHHHHHHHTT--EEEEEEEE--BT..TBS-HHHHHHHHHHHHHHHHHHHHTT-EEEEEEEE---SS--HHHHHHHHHHH CS
  Glycolytic 100 vplagte.getttqGldglaercaqykkdGarFaKWravlkise..ktpselaiqenanvLarYasicqenglvpivepeilldGdhdlercqkvtekv 195
                 +pl+g   get+++Gld laer+ +y+++GarFaKWr+ lki+    +p++lai+ +a+ LarYa+icqe+glvpivepeil+dGdhdl+++++++e+v
  KOO23108.1 142 KPLVGGGpGETWCTGLDTLAERAPKYYAQGARFAKWRTGLKIDVpnGCPTDLAIEVAAQDLARYARICQESGLVPIVEPEILIDGDHDLATTARIQERV 240
                 ****9988**********************************98779**************************************************** PP

                 HHHHHHHHHHTT--GGG-EE--B-----TT-S----HHHHHHHHHHHHHTT--TTS-EEEEB-TT--HHHHHHHHHHHHHTS-.-SSEEEEEESHHHHH CS
  Glycolytic 196 laavykalsdhhvlleGtllkpnmvtpGaecskkatpeevaeatvtalrrtvPpavpgvvflSGgqseeeatvnLnainklekkkpwaltfsygralqa 294
                 l++vy +l+d++vlleG+llkp+m++pG ++++k+ p+++a++tv++l r++Ppa+ gv+flSGg see+++++Ln+inkl++k  waltfs++ralq+
  KOO23108.1 241 LTTVYAKLQDNGVLLEGSLLKPSMTVPGVDAKDKSDPTTIAKMTVQTLDRCLPPAMVGVTFLSGGISEEDSSIYLNEINKLPRKGAWALTFSFSRALQS 339
                 *************************************************************************************************** PP

                 HHHHHHTT-GGGHHHHHHHHHHHHHHHHHHTTT---..----------------- CS
  Glycolytic 295 svlkaWkGkkenvkaaqeellkrakanslaalgkykgeeesaaaseslfvknyay 349
                 s++k+W+Gkken kaaq++l++rakans+a+lgkyk+  ++ + ++slfvkny+y
  KOO23108.1 340 SCIKVWGGKKENYKAAQDQLYARAKANSEASLGKYKPG-SQPSIEQSLFVKNYVY 393
                 ***********************************975.7778899*******98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (393 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       337  (0.0187964); expected 358.6 (0.02)
Passed bias filter:                      320  (0.0178482); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.23s 00:00:00.72 Elapsed: 00:00:00.41
# Mc/sec: 2894.96
//
Query:       KOO23109.1  [L=745]
Description: hypothetical protein Ctob_002997, partial [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
  ------ inclusion threshold ------
        1.2    9.0   7.5         11    6.0   0.6    3.7  3  EMP24_GP25L  emp24/gp25L/p24 family/GOLD


Domain annotation for each model (and alignments):
>> EMP24_GP25L  emp24/gp25L/p24 family/GOLD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.0   0.6   0.00059        11     106     153 ..      34      82 ..      16      86 .. 0.85
   2 ?    0.8   0.0     0.022     4e+02     104     144 ..     317     350 ..     286     359 .. 0.62
   3 ?    3.5   0.3    0.0035        62     102     146 ..     422     466 ..     399     469 .. 0.82

  Alignments for each domain:
  == domain 1  score: 6.0 bits;  conditional E-value: 0.00059
  EMP24_GP25L 106 dsakkeklet.leselkkleekldsikreqkylrereerlrdtnestns 153
                  ++ k+ k+++  +++++k+e  l+s+ re++  ++r ++  +t+ +++s
   KOO23109.1  34 QVLKEHKIQPsDKVTVEKVEALLNSVLRELQKEKTRARSVEETLRKMES 82 
                  466777888866789*************************999999887 PP

  == domain 2  score: 0.8 bits;  conditional E-value: 0.022
  EMP24_GP25L 104 ykdsakkekletleselkkleekldsikreqkylrereerl 144
                  + ++  +  l +l ++lk le+ l++++re        +++
   KOO23109.1 317 SVEARAEARLLELAEHLKALEKALEHSQREG-------TSM 350
                  3334445555556666666666666666554.......444 PP

  == domain 3  score: 3.5 bits;  conditional E-value: 0.0035
  EMP24_GP25L 102 sdykdsakkekletleselkkleekldsikreqkylrereerlrd 146
                   +++++a  ++   ++++l++le +++ ++  q +  +r +  r+
   KOO23109.1 422 AKEAAAASAQEAAATQVKLERLEARVEWLEAAQAHAHRRSKDERA 466
                  33455666999999**********************999988776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (745 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2241  (0.124993); expected 358.6 (0.02)
Passed bias filter:                      592  (0.0330191); expected 358.6 (0.02)
Passed Vit filter:                        76  (0.00423894); expected 17.9 (0.001)
Passed Fwd filter:                        23  (0.00128284); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.98u 0.32s 00:00:01.30 Elapsed: 00:00:00.50
# Mc/sec: 4519.78
//
Query:       KOO23110.1  [L=209]
Description: hypothetical protein Ctob_002994 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (209 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1694  (0.0944838); expected 358.6 (0.02)
Passed bias filter:                      487  (0.0271627); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.47u 0.25s 00:00:00.72 Elapsed: 00:00:00.43
# Mc/sec: 1471.25
//
Query:       KOO23111.1  [L=380]
Description: fructose-bisphosphate aldolase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
      6e-86  288.4   0.0    6.9e-86  288.2   0.0    1.0  1  F_bP_aldolase  Fructose-bisphosphate aldolase class-II


Domain annotation for each model (and alignments):
>> F_bP_aldolase  Fructose-bisphosphate aldolase class-II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  288.2   0.0   3.8e-90   6.9e-86       3     279 ..      36     375 ..      34     376 .. 0.93

  Alignments for each domain:
  == domain 1  score: 288.2 bits;  conditional E-value: 3.8e-90
                    HHHHHHHHHHHT--EEEEE--SHHHHHHHHHHHHHHTS-EEEEE-HHHHHHHH-.............HHHHHHHHHHHHHHHHT...-EEEEEE-- CS
  F_bP_aldolase   3 lkellkkAkeegyavgafnvtnletvkavleaaeeaksPvIlqlsegaaakyag.............gaealaelvraaaeaykkasvpvalhlDH 85 
                    l++ll++Ak +gya++a+nv+++ ++ ++leaa+++  P+I+q+s+g+ ++yag             g +a a +vr++a+ y+   vpv+lh+DH
     KOO23111.1  36 LTDLLEHAKTNGYAIPAVNVVSSCSISGCLEAAKKCGGPMIIQFSRGGGQFYAGktadntndaasiaGCIAGALHVREVAKLYG---VPVILHTDH 128
                    6899************************************************99***************************888...********* PP

                    --G.....HHHHHHHHHH........S-SEEEE--TTS-HHHHHHHHHHHHHHHHHTT-EEEEE-----------....TT-TTTS--HHHHHHHH CS
  F_bP_aldolase  86 gak.....leglkkaiea........gfsSvMiDgSelpleeNialtkevverahalgvsvEaElGriggeedgv....vaeeklyTdpeeaeefv 164
                    +       ++gl++a ea        +fsS+M+D+Se+pleeNi+++k+++er+ +++ ++E+ElG++ggeedgv    v++++lyT+p+e+++++
     KOO23111.1 129 CMRewlpwFDGLIEANEAyfkthgepLFSSHMLDLSEEPLEENIETCKKYLERMSKVNLLLEMELGVTGGEEDGVnnegVDASRLYTQPDEVWQVY 224
                    ********9*****9999999999999***********************************************9776656666************ PP

                    HHHH.....-EEEE--SS---SS--SS..--THHHHHHHHHH.........--..SEE-SGTTS-HHHHHHHHHTTEEEEEE-HHHHHHHHHHHHH CS
  F_bP_aldolase 165 eetg.....vdalAvaiGnvHGvykpkpkLdferlkeiqkav.........vp..lVlHGgsgvpdeeirkaiklGvvKiNidtdlrlaytkavkk 244
                    ++++      +++A+a+GnvHGvy  k +L++ +l++ qk++         +p  +V+HGgsg+++e+ir ai++G +K+Nidtd+++++++++++
     KOO23111.1 225 KALSavpngQFTIAAAFGNVHGVYAGKIDLQPVILHNSQKYIseklggankKPafFVFHGGSGSSREDIRYAIEAGTIKMNIDTDTQWSFWDGIRQ 320
                    ***999999******************99***************999998855557**************************************88 PP

                    G..............G.....E-HH.H-HHHHHHHHHHHHHHHHHHHHHHTT-SS CS
  F_bP_aldolase 245 e..............k.....enkk.ydprkllkeaeeamkevvkekiellgsag 279
                    +              +     +nkk ydpr  l++ae++m++++ e++ +l++ +
     KOO23111.1 321 YeaknrdylqgqignPegatkPNKKyYDPRMSLRAAEQSMAKRLGEAMADLNCVN 375
                    8666666666555550555669****************************99876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (380 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       473  (0.0263818); expected 358.6 (0.02)
Passed bias filter:                      448  (0.0249875); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.26s 00:00:00.74 Elapsed: 00:00:00.40
# Mc/sec: 2835.36
//
Query:       KOO23112.1  [L=154]
Description: hypothetical protein Ctob_002992, partial [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (154 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       210  (0.0117129); expected 358.6 (0.02)
Passed bias filter:                      137  (0.00764125); expected 358.6 (0.02)
Passed Vit filter:                         6  (0.000334653); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.23s 00:00:00.57 Elapsed: 00:00:00.37
# Mc/sec: 1240.88
//
Query:       KOO23113.1  [L=133]
Description: hypothetical protein Ctob_002993 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (133 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       308  (0.0171789); expected 358.6 (0.02)
Passed bias filter:                      287  (0.0160076); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.26s 00:00:00.64 Elapsed: 00:00:00.41
# Mc/sec: 981.22
//
Query:       KOO23114.1  [L=209]
Description: hypothetical protein Ctob_002998 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
  ------ inclusion threshold ------
       0.99    9.5   8.3       0.27   11.3   2.0    2.3  2  Cytidylate_kin2  Cytidylate kinase-like family


Domain annotation for each model (and alignments):
>> Cytidylate_kin2  Cytidylate kinase-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   2.0   1.5e-05      0.27     104     161 ..       9      65 ..       2      78 .. 0.85
   2 ?    1.5   0.3     0.016   2.8e+02     135     169 ..     133     167 ..     115     170 .. 0.74

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 1.5e-05
  Cytidylate_kin2 104 gadliLkdrpnvlrvfltapledrvkrvaereglseeearekiketDkrrakyykkyt 161
                       a+++L++  n + v l a+ e+++++++ r++++e++ +++ k +++ r++ ++   
       KOO23114.1   9 IANNVLRR-GNPYAVNLKADHERCLEEARVRQQMEERQRKQEEKMRERIRRQIVQAAM 65 
                      68999998.448*************999999999999999988888999988887765 PP

  == domain 2  score: 1.5 bits;  conditional E-value: 0.016
  Cytidylate_kin2 135 eglseeearekiketDkrrakyykkytgqdwgdae 169
                      +g++++  r+++++ Dk+r++     +++++++ e
       KOO23114.1 133 HGMERDARRSELDAVDKARSALLLVASEKKLQEVE 167
                      46678888999********9998888887777665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (209 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2312  (0.128953); expected 358.6 (0.02)
Passed bias filter:                      822  (0.0458475); expected 358.6 (0.02)
Passed Vit filter:                        60  (0.00334653); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.26s 00:00:00.75 Elapsed: 00:00:00.42
# Mc/sec: 1491.53
//
Query:       KOO23115.1  [L=77]
Description: hypothetical protein Ctob_002999 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.069   12.9   0.3      0.074   12.8   0.3    1.1  1  ASFV_J13L  African swine fever virus J13L protein


Domain annotation for each model (and alignments):
>> ASFV_J13L  African swine fever virus J13L protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.3   4.1e-06     0.074     115     153 ..       3      41 ..       1      52 [. 0.86

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 4.1e-06
   ASFV_J13L 115 dkpvtnkpvtdrlvmaaggpeaasatasaaasdpaypae 153
                 ++pv   p + r v+aag p+ +sa as+++   a+   
  KOO23115.1   3 HQPVDSAPALRRTVFAAGAPAGTSAFASSTSEGVAFADY 41 
                 58999**********************988877777655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (77 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       262  (0.0146132); expected 358.6 (0.02)
Passed bias filter:                      233  (0.0129957); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.29u 0.27s 00:00:00.56 Elapsed: 00:00:00.37
# Mc/sec: 621.70
//
Query:       KOO23116.1  [L=1529]
Description: putative galacturonosyltransferase 3-like protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    4.6e-14   52.6   0.0    8.6e-14   51.7   0.0    1.4  1  Glyco_transf_8  Glycosyl transferase family 8


Domain annotation for each model (and alignments):
>> Glyco_transf_8  Glycosyl transferase family 8
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.7   0.0   4.8e-18   8.6e-14      99     254 ..     260     452 ..     256     454 .. 0.85

  Alignments for each domain:
  == domain 1  score: 51.7 bits;  conditional E-value: 4.8e-18
  Glyco_transf_8  99 lfpkldkilylDaDvvvqgdlseLwdldlk.gkvlaaved.........................krfkkylnksepliaenfkpeacyFnaGvl 167
                     +++k ++il++D+Dvv+q+d ++L++ ++  g v+ a  d                            +   n+ + ++  + +p+   +n+G++
      KOO23116.1 260 ILKKQERILFVDDDVVIQQDSAKLYNAPVPpGVVFTANCDvnlwnagcqrfdavytpegwrqveqLLGEVSGNQASGQAPIKYDPKFFEWNFGFN 354
                     4599**************************8889999888********************7776533344557778888899999********** PP

  Glyco_transf_8 168 lfdldewrkenitetlikwlnlnekr.....tllklgdqdilnivfkgkvkeldkkynvl.glgy......eqskkskkeitenaaviHyiGpaK 250
                     l+ l+++r+ n+t  ++ + ++  +r     ++l +g   +++i+ ++  ++    + vl glgy      e  + + + i  +a v+Hy+G+ K
      KOO23116.1 355 LMSLKAQREANLTLIYQAMASQVLARkilrgDSLVYGLGVPFLIYQNRIECYKRTGWYVLdGLGYvppaemEVAGVTLDVI-ARAPVLHYNGERK 448
                     *******************7666666456677888888888888888777777777777747788***9999999999999.9************ PP

  Glyco_transf_8 251 PWld 254
                     PW +
      KOO23116.1 449 PWGS 452
                     **87 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1529 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       415  (0.0231469); expected 358.6 (0.02)
Passed bias filter:                      385  (0.0214736); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.83u 0.25s 00:00:01.08 Elapsed: 00:00:00.42
# Mc/sec: 10894.23
//
Query:       KOO23117.1  [L=201]
Description: peptidylprolyl isomerase, partial [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      2e-25   88.9   0.0    3.8e-25   88.0   0.0    1.4  2  FKBP_C      FKBP-type peptidyl-prolyl cis-trans isomerase
    0.00028   19.2   9.7    0.00033   18.9   9.7    1.1  1  AF-4        AF-4 proto-oncoprotein
     0.0024   17.5  19.9     0.0035   17.0  19.9    1.2  1  SR-25       Nuclear RNA-splicing-associated protein
  ------ inclusion threshold ------
       0.12   12.2   6.9       0.16   11.8   6.9    1.2  1  Coilin_N    Coilin N-terminus
       0.17   10.9   2.3       0.23   10.5   2.3    1.1  1  Pes-10      Pes-10
        1.1    9.0  15.1        1.4    8.6  15.1    1.2  1  CCDC106     Coiled-coil domain-containing protein 106
        1.7    8.5   9.8        2.5    8.0   9.8    1.2  1  Med19       Mediator of RNA pol II transcription subunit 19
        3.9    7.3  11.9        5.1    6.9  11.9    1.3  1  DUF3381     Domain of unknown function (DUF3381)
        6.3    5.5   8.3        7.2    5.3   8.3    1.1  1  Presenilin  Presenilin


Domain annotation for each model (and alignments):
>> FKBP_C  FKBP-type peptidyl-prolyl cis-trans isomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   88.0   0.0   1.9e-28   3.8e-25       5      94 .]      16     105 ..      13     105 .. 0.96
   2 ?   -3.7   0.1       8.2   1.6e+04      21      30 ..     168     177 ..     165     186 .. 0.64

  Alignments for each domain:
  == domain 1  score: 88.0 bits;  conditional E-value: 1.9e-28
                 B-TTCEEEEEEEEEET.TSSEEEEHCCHTSEEEEETTSSSSCHHHHHHHTTSBTT-EEEEEEEGGGTTTTTTBCTTTB.TTSEEEEEEEEE CS
      FKBP_C   5 akegdtVtvhykgkle.dgkvfdssrsrakplefkvGsgqvikGfeealegmkvGekrtltippelaYgekglaggvippnatLvFeveLl 94 
                 ++ gd+V +hy g+++  +k+ d sr+r++ ++f vG g+vi G++ a+++m +G +r++ ip  +aYg++g+ +++ippna+L+F++eLl
  KOO23117.1  16 PRLGDKVVCHYSGFIAsSNKKSDCSRDRGHAMTFPVGVGKVIDGWDAAIREMAKGSRRRVLIPAAEAYGARGQ-PPQIPPNADLIFDIELL 105
                 5679************99*******************************************************.889************97 PP

  == domain 2  score: -3.7 bits;  conditional E-value: 8.2
                 TSSEEEEHCC CS
      FKBP_C  21 dgkvfdssrs 30 
                 d++ fds+++
  KOO23117.1 168 DSSSFDSEVE 177
                 6778888755 PP

>> AF-4  AF-4 proto-oncoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.9   9.7   1.7e-07   0.00033     452     505 ..     130     184 ..     102     199 .. 0.72

  Alignments for each domain:
  == domain 1  score: 18.9 bits;  conditional E-value: 1.7e-07
        AF-4 452 ssapqstpesvesahsssaeSeSsSeSeSSSeSDSe.sEssssdseanepprtat 505
                  +++ + + + ++ h+++ + + sSeS SSS+S S+ s+sss dse++++ + + 
  KOO23117.1 130 IREQDALRAAEAARHQQQPAPSRSSESGSSSRSSSDeSDSSSFDSEVEQRREKKR 184
                 3444445555666677777777789**********99*********998876554 PP

>> SR-25  Nuclear RNA-splicing-associated protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.0  19.9   1.7e-06    0.0035      46     113 ..     132     198 ..     112     201 .] 0.47

  Alignments for each domain:
  == domain 1  score: 17.0 bits;  conditional E-value: 1.7e-06
       SR-25  46 ekeeerskekkkkkrrrssssssssssssssssssssssssddrkkrgkkkdkkkkkkkkkkkkkkek 113
                 e+++ r  e +++++++  s ss+s sss sss  s sss d++ ++ ++k++k++k+++ k +k+ k
  KOO23117.1 132 EQDALRAAEAARHQQQPAPSRSSESGSSSRSSSDESDSSSFDSEVEQRREKKRKRNKEER-KARKHAK 198
                 333345555556666655555555555555555544444444433333333333333333.3334333 PP

>> Coilin_N  Coilin N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   6.9   7.9e-05      0.16      51     124 ..     111     195 ..     102     201 .] 0.47

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 7.9e-05
    Coilin_N  51 LyldgclLpptEsir...vlrdndcirV...........klegsetkleaqesede.dsresasksasttkqkkkkKrekkqeeqdeqk 124
                 L  +g+ ++ +E +r    +r++d +r+            +++se+++ + +s+de ds+++    +s+ +q ++kKr++++ee++  k
  KOO23117.1 111 LVSEGMRIRREEAARadkFIREQDALRAaeaarhqqqpaPSRSSESGSSSRSSSDEsDSSSF----DSEVEQRREKKRKRNKEERKARK 195
                 66667777777766422369********7777766555522222222222222222022222....22233333333333333322222 PP

>> Pes-10  Pes-10
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   2.3   0.00011      0.23     148     231 ..      91     191 ..      83     198 .. 0.68

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00011
      Pes-10 148 qieeAdeLvekvekllrkeeivdEdleeeeeede....................edseeddddiededeedesssstdsgiesedeElveereeeeeee 226
                 qi   + L+ ++e l  +e +v+E +    ee                      +++++      +e+ + + sss++s   s+d E+++ re +++++
  KOO23117.1  91 QIPPNADLIFDIELLDINETLVSEGMRIRREEAAradkfireqdalraaeaarhQQQPA--PSRSSESGSSSRSSSDESDSSSFDSEVEQRRE-KKRKR 186
                 77777889999999999999****999777777688999*9999999997754322223..44556666666777777777777777444333.33333 PP

      Pes-10 227 aerle 231
                  ++++
  KOO23117.1 187 NKEER 191
                 33333 PP

>> CCDC106  Coiled-coil domain-containing protein 106
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.6  15.1   0.00071       1.4      40     116 ..     127     197 ..     116     201 .] 0.44

  Alignments for each domain:
  == domain 1  score: 8.6 bits;  conditional E-value: 0.00071
     CCDC106  40 ekfissksleaeaekeskskksekkaeksesessssseesddsssdssessessegsstekkkkkkkkkekkkkkkt 116
                 +kfi  +     a ++++++++++ ++  +ses sss++s d+s  ss  se ++   +++k++k+++k +k+   +
  KOO23117.1 127 DKFIREQDA-LRAAEAARHQQQPAPSR--SSESGSSSRSSSDESDSSSFDSEVEQRREKKRKRNKEERKARKH---A 197
                 555533332.23455555555555433..33333444444444444555555555443333333332222222...2 PP

>> Med19  Mediator of RNA pol II transcription subunit 19
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.0   9.8    0.0013       2.5      99     159 ..     140     198 ..     131     201 .] 0.73

  Alignments for each domain:
  == domain 1  score: 8.0 bits;  conditional E-value: 0.0013
       Med19  99 eqyrllkkqePkkknkekhkkskvkdakseetlsdseteegfekkhkkkkkedDkerkkkk 159
                 e  r+ ++  P++  +e    s++    s+++  dse e+  ekk+k++k e+ k rk+ k
  KOO23117.1 140 EAARHQQQPAPSRS-SESGSSSRSSSDESDSSSFDSEVEQRREKKRKRNK-EERKARKHAK 198
                 56677777777777.66777788888888888889988888888887777.5566666655 PP

>> DUF3381  Domain of unknown function (DUF3381)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.9  11.9    0.0026       5.1     102     159 ..     137     198 ..     108     201 .] 0.64

  Alignments for each domain:
  == domain 1  score: 6.9 bits;  conditional E-value: 0.0026
                 ...............X..XXXX..XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
     DUF3381 102 eekeeeeeedee..ee..eeeeeeaeeeeldeeeeiekeleelkeeekkkkKrekkkankkk 159
                 + +e++ ++++   ++  e+ +++ +++++ +  + ++e+e+ +e+++k++K e+k ++ +k
  KOO23117.1 137 RAAEAARHQQQPapSRssESGSSSRSSSDESDSSSFDSEVEQRREKKRKRNKEERKARKHAK 198
                 222222222222331122455556666667777899******99999999999888877766 PP

>> Presenilin  Presenilin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.3   8.3    0.0036       7.2     230     282 ..     141     193 ..      97     201 .] 0.29

  Alignments for each domain:
  == domain 1  score: 5.3 bits;  conditional E-value: 0.0036
  Presenilin 230 aevaeseeeeeaekkkeeasesskeeeseeesseksaqsseseeeseeessea 282
                 a++++++ + ++++++ ++s+ss++e++++++ ++ +q++e+++++++e+++a
  KOO23117.1 141 AARHQQQPAPSRSSESGSSSRSSSDESDSSSFDSEVEQRREKKRKRNKEERKA 193
                 11111111111111111111111111111111111111111111111111111 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (201 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1925  (0.107368); expected 358.6 (0.02)
Passed bias filter:                      694  (0.0387082); expected 358.6 (0.02)
Passed Vit filter:                       109  (0.00607954); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.50u 0.27s 00:00:00.77 Elapsed: 00:00:00.41
# Mc/sec: 1476.86
//
Query:       KOO23118.1  [L=1281]
Description: heat shock protein 70 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.3e-35  122.6   0.0    2.8e-14   53.2   0.0    4.0  4  Beta_helix  Right handed beta helix region
    2.5e-16   59.7   0.0      2e-07   30.5   0.0    3.5  3  NosD        Periplasmic copper-binding protein (NosD)


Domain annotation for each model (and alignments):
>> Beta_helix  Right handed beta helix region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.0       0.5   4.5e+03      39      60 ..      29      50 ..      13      53 .. 0.59
   2 !   28.4   0.0   1.4e-10   1.3e-06      25     143 ..     724     845 ..     697     856 .. 0.79
   3 !   53.2   0.0   3.2e-18   2.8e-14       2     146 ..     873    1016 ..     861    1019 .. 0.92
   4 !   35.5   0.0     9e-13   8.1e-09      34     149 ..    1161    1276 ..    1144    1280 .. 0.92

  Alignments for each domain:
  == domain 1  score: -2.7 bits;  conditional E-value: 0.5
                -EEES-SS-SEEE-TT-S-EEE CS
  Beta_helix 39 neiannsgsGiyilgssnntis 60
                ++++ +++ G++++++sn+t++
  KOO23118.1 29 THVHPDYEQGVALNYDSNSTVR 50
                4444455556666666665554 PP

  == domain 2  score: 28.4 bits;  conditional E-value: 1.4e-10
                 SEEE-SSS-.EEES-EEES....-SS-SEEE-TT.-S-EEES-EEE---SEEE-TT--S--EEES-EEES-SS-SEE-TT-S--EEES-EEESTT--SE CS
  Beta_helix  25 Giylrgssnvvienneian....nsgsGiyilgs.snntisnntisdnngggialfgasnnlienneitdnggsGiylnyssnntienNiidnnagsGi 118
                 Gi lrg +  v+e++ i+      +  G+  +gs s  t++++t++d++++g+ l  + ++ +  ++ + +gg+   + ++  +++e+++++++a+s++
  KOO23118.1 724 GIELRGKT--VVERCQISArsrtKNSAGVLARGSsSAPTLRGCTVHDCGQSGVLLATGARSSLLQCTLRSCGGCASLVLGNCVLDLEGCVLTGCAESAV 820
                 66666655..58888888888887777777777778899999999999999999999999999999999999976666688889999999999998888 PP

                 E---TT---EEES-EEES-S.SEEEE CS
  Beta_helix 119 viddsssnvtvtnNtitnnk.gaGia 143
                  +   +   t  ++++++n+ gaG+a
  KOO23118.1 821 LVVGHA-AATLVGCKLVGNGgGAGLA 845
                 888888.7777999999998555554 PP

  == domain 3  score: 53.2 bits;  conditional E-value: 3.2e-18
                  SEEE-SS-E.EEESEEEES-SS-SEEE-SSS-.EEES-EEES-SS-SEEE-TT.-S-EEES-EEE---SEEE-TT--S--EEES-EEES-SS-SEE- CS
  Beta_helix    2 gisingssnvtiknntisnsggyGiylrgssnvvienneiannsgsGiyilgs.snntisnntisdnngggialfgasnnlienneitdnggsGiyl 97  
                  g+ ++++ +++i ++ i+++ ++G+ ++ +++  + +++i+     G+ +    + + i++nt + n+  ++ ++++   ++  n+i d  g Giy+
  KOO23118.1  873 GVQLSDGAEASIAKCSIRGCVKAGVAAKAAGKLQLLDCDISEGAAAGVLVMLPgPSAMIKGNTLRANGKAALQVSAGASPTLHSNRILDGHGPGIYI 969 
                  77888888899*********************99999*****999998887767******************************************* PP

                  TT-S--EEES-EEESTT--SEE---TT---EEES-EEES-SSEEEE-TT CS
  Beta_helix   98 nyssnntienNiidnnagsGividdsssnvtvtnNtitnnkgaGiavvg 146 
                  ++    ++ +N+i+++ag Gi ++ s+     + Nt+   +++Gi + g
  KOO23118.1  970 FDGAAAQLLHNHISGCAGPGIKVEGSA--PLLERNTVCAGADVGIVISG 1016
                  ***************************..447******9999**97655 PP

  == domain 4  score: 35.5 bits;  conditional E-value: 9e-13
                  .EEES-EEES-SS-SEEE-TT-S-EEES-EEE---SEEE-TT--S--EEES-EEES-SS-SEE-TT.-S--EEES-EEESTT--SEE---TT---EE CS
  Beta_helix   34 vvienneiannsgsGiyilgssnntisnntisdnngggialfgasnnlienneitdnggsGiylny.ssnntienNiidnnagsGividdsssnvtv 129 
                  + +++ne+++n   G+ i++++  ++++n ++d+ + g+ +++ ++ ++++ne +  +++ ++l++  +   + nN +++ ++ Gi +  ++ +  +
  KOO23118.1 1161 AQLRGNEVYGNAKCGLLITSGACPWVEGNLFRDGMAAGVLVNAKGGGVLRGNELRGHAKTELQLTDaGTAPHVDNNLMHASQAGGILVFGGA-GGLF 1256
                  57899************************************************************64888**********************.999* PP

                  ES-EEES-SSEEEE-TT-SS CS
  Beta_helix  130 tnNtitnnkgaGiavvgsss 149 
                  + Nt+++n++a + ++++s+
  KOO23118.1 1257 RSNTVYSNASANVRLAEGSD 1276
                  *********99988888876 PP

>> NosD  Periplasmic copper-binding protein (NosD)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.1   0.0   7.9e-05      0.71      60     126 ..     722     792 ..     662     843 .. 0.76
   2 !   30.5   0.0   2.2e-11     2e-07      37     158 ..     870     994 ..     860    1014 .. 0.89
   3 !   15.6   0.0   8.1e-07    0.0072      72     168 ..    1162    1265 ..    1152    1278 .. 0.69

  Alignments for each domain:
  == domain 1  score: 9.1 bits;  conditional E-value: 7.9e-05
        NosD  60 ryGihlenses...ntiedntlssnesGialmsssnn.tlenNtisnnenyGillsdssnntisnNtisnn 126
                   Gi l ++     + i+    ++n++G++   ss   tl++ t+ ++ + G+ll + + +++ + t  ++
  KOO23118.1 722 VFGIELRGKTVverCQISARSRTKNSAGVLARGSSSApTLRGCTVHDCGQSGVLLATGARSSLLQCTLRSC 792
                 56666666655555778888888999999999999889999999999999999999999999998887544 PP

  == domain 2  score: 30.5 bits;  conditional E-value: 2.2e-11
        NosD  37 srdgilldnssnntitgntienl.ryGihlensesntiedntlssne.sGialmsssnn.tlenNtisnnenyGillsdssnntisnNtis.nnnkGif 131
                 s  g+ l++  +++i ++ i+ + ++G+  + + +  + d+ +s+   +G+++m    + ++++Nt++ n ++   +s+ ++ t+  N+i+   + Gi+
  KOO23118.1 870 SGVGVQLSDGAEASIAKCSIRGCvKAGVAAKAAGKLQLLDCDISEGAaAGVLVMLPGPSaMIKGNTLRANGKAALQVSAGASPTLHSNRILdGHGPGIY 968
                 45577899999999999999999999***************9999999*******99888************99999999999*******9999***** PP

        NosD 132 lensssntitgNriesnqkiGilllss 158
                 + +    ++ +N+i+++ + Gi  +++
  KOO23118.1 969 IFDGAAAQLLHNHISGCAGPGIK-VEG 994
                 *****************999998.444 PP

  == domain 3  score: 15.6 bits;  conditional E-value: 8.1e-07
        NosD   72 tiedntlssne.sGialmsssnn.tlenNtisnnenyGillsdssnntisnNtis.nnnkGiflens.ssntitgNriesnqkiGilllssseg... 161 
                   +++n++++n  +G++++s   +  +e+N +++   +G+l+++  +  +++N+     ++ ++l+++ +   + +N   ++q  Gil + ++ g   
  KOO23118.1 1162 QLRGNEVYGNAkCGLLITSGA-CpWVEGNLFRDGMAAGVLVNAKGGGVLRGNELRgHAKTELQLTDAgTAPHVDNNLMHASQAGGIL-VFGGAGglf 1256
                  578888888887787777777.55899999999888899999888888999998888888888888855555556666666555555.555555133 PP

        NosD  162 ..ntiynNy 168 
                    nt+y N 
  KOO23118.1 1257 rsNTVYSNA 1265
                  334444443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1281 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       664  (0.037035); expected 358.6 (0.02)
Passed bias filter:                      377  (0.0210274); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.77u 0.31s 00:00:01.08 Elapsed: 00:00:00.45
# Mc/sec: 8491.81
//
Query:       KOO23119.1  [L=296]
Description: endo-1,4-beta-mannosidase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00014   21.4   0.0    0.00029   20.4   0.0    1.7  1  Cellulase  Cellulase (glycosyl hydrolase family 5)


Domain annotation for each model (and alignments):
>> Cellulase  Cellulase (glycosyl hydrolase family 5)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.4   0.0   1.6e-08   0.00029     114     175 ..     172     240 ..       3     288 .. 0.66

  Alignments for each domain:
  == domain 1  score: 20.4 bits;  conditional E-value: 1.6e-08
                 HHHTTTTTTEEEESSSS--STTCTCCTCHHHTTHHHHHHHHHHHHHHHHTTSSEEEEECHH........H CS
   Cellulase 114 erykkndevvifelmNEPhgnntgaewtseeadevkayaeeaikaIRavgpnrliivegns........w 175
                   y+ +++++++el+NEP+ +++ +++   ++ ++ +++  +++ ++ + p +l++v++++         
  KOO23119.1 172 MAYAEDPTILGWELCNEPRAVSD-ESGRLAARLALIQWVRSTAALVKRHAPRQLVMVGSEGttpfgeyiN 240
                 46999***************887.567788899999**********************966555444440 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (296 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       354  (0.0197445); expected 358.6 (0.02)
Passed bias filter:                      265  (0.0147805); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.25s 00:00:00.68 Elapsed: 00:00:00.40
# Mc/sec: 2230.21
//
Query:       KOO23120.1  [L=172]
Description: selenoprotein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.8e-11   42.9   0.0      1e-09   38.3   0.0    2.3  2  Thioredoxin    Thioredoxin
    0.00065   19.3   4.1     0.0009   18.9   4.1    1.2  1  Arfaptin       Arfaptin-like domain
     0.0089   15.4   0.0       0.18   11.1   0.0    2.0  2  OST3_OST6      OST3 / OST6 family, transporter family
  ------ inclusion threshold ------
      0.012   15.7   3.5      0.017   15.2   3.5    1.3  1  DUF1043        Protein of unknown function (DUF1043)
       0.02   14.3   3.6      0.029   13.8   3.6    1.2  1  DUF4618        Domain of unknown function (DUF4618)
      0.025   15.0   0.0       0.44   11.0   0.0    2.1  2  Thioredoxin_2  Thioredoxin-like domain
       0.11   12.3   4.5       0.14   12.0   4.5    1.1  1  MAT1           CDK-activating kinase assembly factor MAT1
       0.15   11.3   3.3       0.19   10.9   3.3    1.1  1  Tho2           Transcription factor/nuclear export subunit pr
       0.19   10.3   1.6       0.23   10.0   1.6    1.1  1  FapA           Flagellar Assembly Protein A
       0.23   11.8   7.1       0.35   11.2   7.1    1.3  1  OmpH           Outer membrane protein (OmpH-like)
       0.73   10.2   6.3        1.7    9.0   6.3    1.7  1  HalX           HalX domain


Domain annotation for each model (and alignments):
>> Thioredoxin  Thioredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.3   0.0   6.3e-13     1e-09      36     102 ..       1      71 [.       1      72 [. 0.91
   2 ?    2.2   0.1       0.1   1.7e+02      36      83 ..     112     159 ..     107     171 .. 0.81

  Alignments for each domain:
  == domain 1  score: 38.3 bits;  conditional E-value: 6.3e-13
                  HHHHHHHHHHHCTT..TSEEEEEETTTS.HHHHHHTT-SSSSEEEEEETTE.EEEEEESS-HHHHHHHHHH CS
  Thioredoxin  36 laPeleklaeelkd..kvklakvdvden.edlakkyevegiPtlklfkngk.evkkyegarekeklaaflk 102
                  ++P +++l e+++   kv++a vd+++  ++l++ky+v+g+Pt+k f+  + e ++y+g+r+ ++l++f +
   KOO23120.1   1 MKPDWDSLGETFASsnKVVIADVDCTAGgKSLCEKYGVRGYPTIKYFNPPDeEGEDYKGGRDLAALKKFAE 71 
                  78**********9999**********95389**************999877699*************9975 PP

  == domain 2  score: 2.2 bits;  conditional E-value: 0.1
                  HHHHHHHHHHHCTTTSEEEEEETTTSHHHHHHTT-SSSSEEEEEETTE CS
  Thioredoxin  36 laPeleklaeelkdkvklakvdvdenedlakkyevegiPtlklfkngk 83 
                  ++ el+++ e++++ +k ++   +e++d  +k++ ++ P +kl+k+  
   KOO23120.1 112 MKAELKAAEEAHNELLKELQAKFKESQDALEKLKEDSAPVIKLLKAAS 159
                  677778888888888889999999999999999999*****9999876 PP

>> Arfaptin  Arfaptin-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.9   4.1   5.5e-07    0.0009     151     201 ..     107     157 ..      89     161 .. 0.95

  Alignments for each domain:
  == domain 1  score: 18.9 bits;  conditional E-value: 5.5e-07
                 HHHHHHH..TSTSSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
    Arfaptin 151 lklkeasdEldpevakqeekfreaqenvqeakekfdklrkDvlqKveLLee 201
                 +k+ +++ El+   ++++e+++e q++++e+++ ++kl++D++  ++LL++
  KOO23120.1 107 SKMTKMKAELKAAEEAHNELLKELQAKFKESQDALEKLKEDSAPVIKLLKA 157
                 699**********************************************87 PP

>> OST3_OST6  OST3 / OST6 family, transporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.1   0.0   0.00011      0.18      57     140 ..       6      77 ..       1      94 [. 0.69
   2 ?    2.7   0.0     0.039        64      78     106 ..     131     159 ..     103     171 .. 0.82

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00011
   OST3_OST6  57 elvakswrkdekskskklfFakvdfde.gkdvFqklglnsaPhlllfppkkgpkeskkkdtydfsrggfdaealakfisertgvk 140
                 + + + + +     s+k++ a vd    gk++ +k+g++  P + +f+p +     ++ ++y+   gg d +al kf +  +g+ 
  KOO23120.1   6 DSLGETFAS-----SNKVVIADVDCTAgGKSLCEKYGVRGYPTIKYFNPPD-----EEGEDYK---GGRDLAALKKFAETELGPG 77 
                 455555555.....58*********8879********************33.....2334443...4555555666655555555 PP

  == domain 2  score: 2.7 bits;  conditional E-value: 0.039
   OST3_OST6  78 kvdfdegkdvFqklglnsaPhlllfppkk 106
                 ++ f+e++d  +kl+  saP++ l ++++
  KOO23120.1 131 QAKFKESQDALEKLKEDSAPVIKLLKAAS 159
                 6789******************9999844 PP

>> DUF1043  Protein of unknown function (DUF1043)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.2   3.5     1e-05     0.017      24      72 ..     107     155 ..      82     161 .. 0.88

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 1e-05
     DUF1043  24 kkqkklekelekakaeleeqkqeledHfaqsaelLetlaedyqkLyqhl 72 
                  k  k+++el++a+++++e  +el+  f++s++ Le+l+ed   + + l
  KOO23120.1 107 SKMTKMKAELKAAEEAHNELLKELQAKFKESQDALEKLKEDSAPVIKLL 155
                 57789************************************88776655 PP

>> DUF4618  Domain of unknown function (DUF4618)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   3.6   1.8e-05     0.029     100     156 ..      87     143 ..      78     158 .. 0.68

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 1.8e-05
     DUF4618 100 lqeelnvLstYkDkeYpvkavqIanlvrqlqqlkdsqqdeldeleelikevleklsk 156
                 ++ +l+ L+tY+D++   +  +++++  +l+  ++ +++ l el+   ke    l+k
  KOO23120.1  87 SEAQLKELQTYMDMDASERESKMTKMKAELKAAEEAHNELLKELQAKFKESQDALEK 143
                 566777777777777777777777777777777777777777777766666655554 PP

>> Thioredoxin_2  Thioredoxin-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   0.00027      0.44      47      99 ..      17      60 ..       2      69 .. 0.73
   2 ?    2.1   0.0      0.16   2.6e+02      42      84 ..     104     152 ..      76     167 .. 0.51

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00027
  Thioredoxin_2 47 epkavaiwcakekkkafkdieenvelarkygvrgtPtivfldgk.eivarlpGy 99
                   + ++++++c++            + l +kygvrg Pti ++++  e+ + ++G 
     KOO23120.1 17 KVVIADVDCTAGG----------KSLCEKYGVRGYPTIKYFNPPdEEGEDYKGG 60
                   5555666666665..........4899************999877777777776 PP

  == domain 2  score: 2.1 bits;  conditional E-value: 0.16
  Thioredoxin_2  42 lkpsfepkavaiwcakekk.....kafkd....ieenvelarkygvrgtPti 84 
                     ++s ++k+ a  +a+e++     k   +     +e+++ ++k++ ++ P i
     KOO23120.1 104 ERESKMTKMKAELKAAEEAhnellK---ElqakFKESQDALEKLKEDSAPVI 152
                    4444444444444444443222222...033355556666666666666665 PP

>> MAT1  CDK-activating kinase assembly factor MAT1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   4.5   8.6e-05      0.14      86     153 ..      82     148 ..      66     165 .. 0.84

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 8.6e-05
        MAT1  86 eklkqeeeeleeleelekeekeekrkeekqeeeeekekkekakeelideLatsskdaeeiiekvkkka 153
                 +k++ +e++l+el+  + +  +e++ +  ++++e  +  e+a++el++eL++  k++++ +ek k+++
  KOO23120.1  82 AKENCSEAQLKELQTYMDMDASERESKMTKMKAE-LKAAEEAHNELLKELQAKFKESQDALEKLKEDS 148
                 5777889999999999999888888888887765.566788999************999999998876 PP

>> Tho2  Transcription factor/nuclear export subunit protein 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   3.3   0.00011      0.19      34      96 ..      91     153 ..      81     167 .. 0.78

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00011
        Tho2  34 lkseieelakdrsderaaakkkkkekkrlkeliekLeeEkkeqiehvekvkkrLkeekkswfk 96 
                 lk+  + ++ d s+ +++++k k+e k  +e +++L +E++++ ++++  +++Lke +   +k
  KOO23120.1  91 LKELQTYMDMDASERESKMTKMKAELKAAEEAHNELLKELQAKFKESQDALEKLKEDSAPVIK 153
                 33333333566666689999***********************************99876666 PP

>> FapA  Flagellar Assembly Protein A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   1.6   0.00014      0.23     356     421 ..      89     156 ..      60     165 .. 0.68

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.00014
        FapA 356 lkkk.ikklpklkaekqlesekkeqlkklletkeklkeeleeleeelkelkeeleskkeea..kikvnk 421
                  + k ++   ++ a ++ es++ ++ ++l+ + e+++e l+el++++ke ++ le+ ke++   ik  k
  KOO23120.1  89 AQLKeLQTYMDMDA-SERESKMTKMKAELKAAEEAHNELLKELQAKFKESQDALEKLKEDSapVIKLLK 156
                 33333444444333.334677888888888888888899999999999888888888443324555555 PP

>> OmpH  Outer membrane protein (OmpH-like)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   7.1   0.00022      0.35      23      87 ..      90     148 ..      79     164 .. 0.40

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00022
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTS.-HHHHHHHHHHHHHHHHHHHHHH...HHHHHHH CS
        OmpH  23 qlekkfkklqaeleakekelqklqeelqkkakklekeekeqelqkkeqelqqkqqqka...qelqkkq 87 
                 ql++ ++ ++ +  ++e +++k+++el         +++e++ +++ +elq+k+++ +   ++l++ +
  KOO23120.1  90 QLKELQTYMDMDASERESKMTKMKAEL---------KAAEEAHNELLKELQAKFKESQdalEKLKEDS 148
                 232222222222222222233333333.........23333344444444443333331113333333 PP

>> HalX  HalX domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.0   6.3    0.0011       1.7      13      57 ..     103     147 ..      88     151 .. 0.85

  Alignments for each domain:
  == domain 1  score: 9.0 bits;  conditional E-value: 0.0011
        HalX  13 faLasKravLeaekseaeLadseeYqeLearleelraqldetlde 57 
                  + +sK+ +++ae+ +ae a +e   eL+a + e ++ l+ + ++
  KOO23120.1 103 SERESKMTKMKAELKAAEEAHNELLKELQAKFKESQDALEKLKED 147
                 5668*********************************99987665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (172 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2134  (0.119025); expected 358.6 (0.02)
Passed bias filter:                     1074  (0.059903); expected 358.6 (0.02)
Passed Vit filter:                       164  (0.00914719); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.48u 0.28s 00:00:00.76 Elapsed: 00:00:00.40
# Mc/sec: 1300.52
//
Query:       KOO23121.1  [L=427]
Description: hypothetical protein Ctob_010813 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (427 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       484  (0.0269954); expected 358.6 (0.02)
Passed bias filter:                      452  (0.0252106); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.48u 0.25s 00:00:00.73 Elapsed: 00:00:00.40
# Mc/sec: 3179.51
//
Query:       KOO23122.1  [L=632]
Description: hypothetical protein Ctob_010810 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.1e-21   77.6   0.0    7.6e-07   29.9   0.0    4.9  5  Filamin     Filamin/ABP280 repeat
    7.3e-05   23.0   0.1    0.00069   19.9   0.0    2.5  2  Invasin_D3  Invasin, domain 3


Domain annotation for each model (and alignments):
>> Filamin  Filamin/ABP280 repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.2   0.0   1.3e-05      0.12       3      82 ..      33     108 ..      31     119 .. 0.81
   2 !   11.5   0.0   4.6e-05      0.42      77     102 ..     179     204 ..     167     205 .. 0.90
   3 !   16.6   0.0   1.2e-06     0.011      60     102 ..     316     373 ..     212     374 .. 0.58
   4 ?   -1.5   0.0      0.51   4.6e+03      81     102 ..     489     510 ..     486     511 .. 0.89
   5 !   29.9   0.0   8.5e-11   7.6e-07      28     102 ..     559     625 ..     548     626 .. 0.90

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 1.3e-05
                 STTSEEEESGGGTEEETTS-EEEEEEESSSTSCCCSTTS.....EEEEE..ESSTS.....EEEEEEEE-SSSEEEEEE--SS CS
     Filamin   3 dpskskvnGpGieasvagesltFtvytkdakgeksevgg...delqvrivtgsphgaatkssvkievvdnedgtytvsYtpee 82 
                 +++ s+  G+G+ ++vag+ + F+vy  d +g+++ + g   + l v +   +p +        ++++   dg+ +v Yt+++
  KOO23122.1  33 NAKLSTTIGEGLCSAVAGKGACFIVYGTDTEGRPVLSVGylaSVLVVSL--IGPAQVD-----SQRFESLTDGSVRVWYTAKR 108
                 67778889***************************99884444444555..7787763.....3569*************997 PP

  == domain 2  score: 11.5 bits;  conditional E-value: 4.6e-05
                 EE--SSSCEEEEEEEETTCE-TTSSE CS
     Filamin  77 sYtpeepgtyrvsvkldgkhiggsPf 102
                 ++ + ++gty  +++ld++h+ gsP 
  KOO23122.1 179 TFCVPRAGTYLAHITLDQQHVVGSPL 204
                 788899*******************6 PP

  == domain 3  score: 16.6 bits;  conditional E-value: 1.2e-06
                 ................EEEEEEEE-SSSEEEEEE--SSSCEEEEEEEETTCE-TTSSE CS
     Filamin  60 s...............svkievvdnedgtytvsYtpeepgtyrvsvkldgkhiggsPf 102
                                  + + v+ + dg++ v Yt+ ++g   +s++l++++ig sP+
  KOO23122.1 316 RlrvgsgqragstlaaAASAAVTLKPDGSFAVGYTIRRAGIWALSLMLGDEPIGRSPY 373
                 03333334444455555566799999*******************************9 PP

  == domain 4  score: -1.5 bits;  conditional E-value: 0.51
                 SSSCEEEEEEEETTCE-TTSSE CS
     Filamin  81 eepgtyrvsvkldgkhiggsPf 102
                  ++g++ v+ +l+  + +gsP 
  KOO23122.1 489 FRAGDHLVRARLGALELPGSPV 510
                 5789*****************6 PP

  == domain 5  score: 29.9 bits;  conditional E-value: 8.5e-11
                 EESSSTSCCCSTTS..EEEEE..ESSTS.....EEEEEEEE-SSSEEEEEE--SSSCEEEEEEEETTCE-TTSSE CS
     Filamin  28 ytkdakgeksevggdelqvrivtgsphgaatkssvkievvdnedgtytvsYtpeepgtyrvsvkldgkhiggsPf 102
                  t d++ +++++gg  +  ++  ++p  +       + v+d+ dg+yt+s+ +  +g yrvsv +dg h +gsPf
  KOO23122.1 559 LTADKYANPVRHGGAGVTAKL--SGPGAC------STTVEDHLDGSYTISWSAVLSGVYRVSVLVDGAHCAGSPF 625
                 578999999999999999999..999777......356************************************9 PP

>> Invasin_D3  Invasin, domain 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.0      0.25   2.3e+03      23      35 ..     235     247 ..     223     272 .. 0.78
   2 !   19.9   0.0   7.7e-08   0.00069      22      84 ..     554     619 ..     552     629 .. 0.82

  Alignments for each domain:
  == domain 1  score: -1.0 bits;  conditional E-value: 0.25
  Invasin_D3  23 tltvtlkDangnp 35 
                   tv l+Da+gn+
  KOO23122.1 235 ICTVWLRDAFGNA 247
                 569999***9997 PP

  == domain 2  score: 19.9 bits;  conditional E-value: 7.7e-08
  Invasin_D3  22 stltvtlkDangnp..vsgltvtfsttsag.tlsavtdngdGtytatLtattagtatitptvnGva 84 
                 s lt+   D+  np   +g+ vt + +  g   ++v+d+ dG yt   +a  +g++ +++ v+G+ 
  KOO23122.1 554 SALTLLTADKYANPvrHGGAGVTAKLSGPGaCSTTVEDHLDGSYTISWSAVLSGVYRVSVLVDGAH 619
                 67999999******76666779999886774345799***************************43 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (632 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       403  (0.0224776); expected 358.6 (0.02)
Passed bias filter:                      263  (0.014669); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.53u 0.26s 00:00:00.79 Elapsed: 00:00:00.42
# Mc/sec: 4557.14
//
Query:       KOO23123.1  [L=394]
Description: hypothetical protein Ctob_010812 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
      3e-07   29.8   0.1      0.036   14.0   0.1    2.8  3  EF-hand_6       EF-hand domain
    7.1e-05   23.2   0.1    0.00018   21.9   0.1    1.7  1  EF-hand_7       EF-hand domain pair
     0.0002   20.6   0.8      0.059   12.9   0.2    2.5  2  EF-hand_1       EF hand
    0.00042   20.1   0.2     0.0031   17.3   0.1    2.3  2  EF-hand_8       EF-hand domain pair
  ------ inclusion threshold ------
      0.025   14.1   0.6       0.39   10.3   0.3    2.4  2  EF-hand_5       EF hand
        4.4    8.2   9.1        1.5    9.7   0.8    2.4  2  GEN1_C          Holliday junction resolvase Gen1 C-terminal d


Domain annotation for each model (and alignments):
>> EF-hand_6  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.0       2.9   8.6e+03      15      27 ..      12      24 ..      12      27 .. 0.78
   2 !   14.0   0.1   1.2e-05     0.036       5      29 ..      34      57 ..      30      59 .. 0.86
   3 !   12.7   0.0   3.2e-05     0.094       4      26 ..      70      92 ..      67      99 .. 0.87

  Alignments for each domain:
  == domain 1  score: -2.8 bits;  conditional E-value: 2.9
   EF-hand_6 15 GkidaeElrkalr 27
                G +++  lr+ +r
  KOO23123.1 12 GVLTPTTLRDYFR 24
                7788888888887 PP

  == domain 2  score: 14.0 bits;  conditional E-value: 1.2e-05
   EF-hand_6  5 aFklfDkdgdGkidaeElrkalrka 29
                 F+ +D + dG+++ +E+ +  r a
  KOO23123.1 34 HFRGLDDNQDGELTLKEFTDGVR-A 57
                69****************99888.5 PP

  == domain 3  score: 12.7 bits;  conditional E-value: 3.2e-05
   EF-hand_6  4 eaFklfDkdgdGkidaeElrkal 26
                 +Fk +D+dg+G + ++El k l
  KOO23123.1 70 FVFKWLDNDGSGVVPYKELDKKL 92
                58****************97755 PP

>> EF-hand_7  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.9   0.1     6e-08   0.00018       6      66 ..      33      88 ..      29      93 .. 0.88

  Alignments for each domain:
  == domain 1  score: 21.9 bits;  conditional E-value: 6e-08
   EF-hand_7  6 eaFkelDtdgdgyldkeellrllrkifqgagegsklsdeelellfkefDtdkdGvisfdEF 66
                + F+ lD ++dg l+  e+ + +r+i    g  +  ++ e e +fk +D d++Gv+ + E+
  KOO23123.1 33 QHFRGLDDNQDGELTLKEFTDGVRAI----GFLDA-TKAECEFVFKWLDNDGSGVVPYKEL 88
                579***************999***97....55555.8899******************997 PP

>> EF-hand_1  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.9   0.2     2e-05     0.059       6      28 ..      35      57 ..      35      58 .. 0.90
   2 !    5.9   0.0    0.0034        10       2      22 ..      68      88 ..      67      90 .. 0.83

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 2e-05
                HHHHTTTSSSEEEHHHHHHHHHH CS
   EF-hand_1  6 FrefDkDgdGkIdfeEfkellkk 28
                Fr +D ++dG ++++Ef + +++
  KOO23123.1 35 FRGLDDNQDGELTLKEFTDGVRA 57
                7889*************999876 PP

  == domain 2  score: 5.9 bits;  conditional E-value: 0.0034
                HHHHHHHHTTTSSSEEEHHHH CS
   EF-hand_1  2 lkeiFrefDkDgdGkIdfeEf 22
                ++ +F+ +D Dg+G + ++E+
  KOO23123.1 68 CEFVFKWLDNDGSGVVPYKEL 88
                56667778***********98 PP

>> EF-hand_8  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.2   0.1    0.0016       4.6      32      49 ..      35      52 ..      12      57 .. 0.81
   2 !   17.3   0.1     1e-06    0.0031       1      47 [.      42      87 ..      42      88 .. 0.88

  Alignments for each domain:
  == domain 1  score: 7.2 bits;  conditional E-value: 0.0016
   EF-hand_8 32 frefDtdgdGkisfeEFc 49
                fr +D ++dG ++++EF 
  KOO23123.1 35 FRGLDDNQDGELTLKEFT 52
                999**************6 PP

  == domain 2  score: 17.3 bits;  conditional E-value: 1e-06
   EF-hand_8  1 ekgkItreelrrilrilglkkglseeevdilfrefDtdgdGkisfeE 47
                ++g++t  e+ + +r++g   + ++ e++ +f+ +D dg+G++ ++E
  KOO23123.1 42 QDGELTLKEFTDGVRAIGFL-DATKAECEFVFKWLDNDGSGVVPYKE 87
                589*********77666666.5*********************9888 PP

>> EF-hand_5  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.3   0.00013      0.39       2      21 ..      33      51 ..      32      55 .. 0.87
   2 ?    1.1   0.0       0.1   3.1e+02       5      16 ..      72      83 ..      71      92 .. 0.76

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.00013
                HHHHHHH-SS-SSCE-HHHH CS
   EF-hand_5  2 kdtFqaiDlNgDGkIskeEL 21
                ++ F+ +D N+DG ++  E+
  KOO23123.1 33 QH-FRGLDDNQDGELTLKEF 51
                55.999*************9 PP

  == domain 2  score: 1.1 bits;  conditional E-value: 0.1
                HHHH-SS-SSCE CS
   EF-hand_5  5 FqaiDlNgDGkI 16
                F+ +D +g+G +
  KOO23123.1 72 FKWLDNDGSGVV 83
                666899***987 PP

>> GEN1_C  Holliday junction resolvase Gen1 C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.5   1.9     0.092   2.8e+02      51      80 ..     105     134 ..      81     144 .. 0.50
   2 ?    9.7   0.8   0.00051       1.5      46      97 ..     284     340 ..     237     347 .. 0.79

  Alignments for each domain:
  == domain 1  score: 2.5 bits;  conditional E-value: 0.092
      GEN1_C  51 aededdedeeeeeeasakkkrkkkpydPse 80 
                 a  e+   + ++++++ +kk+ k+p++P++
  KOO23123.1 105 AAAEQAAAKAAADAKKLAKKKPKSPKSPKA 134
                 222222222222444445555555555554 PP

  == domain 2  score: 9.7 bits;  conditional E-value: 0.00051
      GEN1_C  46 greglaededdedeeee.....eeasakkkrkkkpydPseperiWipeslvrlgaPe 97 
                 +++++a++++ e+e e+      +a    +++     P+++ ++W+p++++ l+a e
  KOO23123.1 284 AQAERALEAKREEEAERrelvrLAAMGMAEKAMVAPLPTKHPQVWMPRAMASLVAEE 340
                 4555555555555544456777777888888888999***************99876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (394 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1245  (0.0694406); expected 358.6 (0.02)
Passed bias filter:                      664  (0.037035); expected 358.6 (0.02)
Passed Vit filter:                        78  (0.00435049); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.57u 0.33s 00:00:00.89 Elapsed: 00:00:00.45
# Mc/sec: 2603.06
//
Query:       KOO23124.1  [L=562]
Description: snf2 super family [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    4.8e-61  206.4   0.0    7.9e-61  205.7   0.0    1.3  1  SNF2_N         SNF2 family N-terminal domain
    3.9e-18   65.8   0.0    3.3e-17   62.8   0.0    2.2  2  Helicase_C     Helicase conserved C-terminal domain
    1.5e-07   30.9   0.1    3.1e-07   29.9   0.1    1.5  1  HDA2-3         Class II histone deacetylase complex subunits 
    2.1e-07   31.1   0.0    1.4e-06   28.5   0.0    2.2  2  ResIII         Type III restriction enzyme, res subunit
  ------ inclusion threshold ------
      0.082   12.1   0.1       0.14   11.3   0.1    1.4  1  ERCC3_RAD25_C  ERCC3/RAD25/XPB C-terminal helicase


Domain annotation for each model (and alignments):
>> SNF2_N  SNF2 family N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  205.7   0.0   2.2e-64   7.9e-61      51     349 ..      15     292 ..       4     293 .. 0.88

  Alignments for each domain:
  == domain 1  score: 205.7 bits;  conditional E-value: 2.2e-64
                 HHHTT--EEE---TTS--HHHHHHHHH...HHTTTS---.......S-EEEE--HHHHHHHHHHHHHH-TTS-EEE--SSHHHH--------------- CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
      SNF2_N  51 akqsvrGGiLaDemGLGKTvqvlalilaqrakeekdkekkrkdtlagptLivvPaslldqWeneierhvsssalrvlvyggqkkmkkkntkvapkllad 149
                 ++++  +GiL DemGLGKTvq++a+++++++           + + gp+++v P s++++W ne+++++++ +  +++++++++++   +    k  + 
  KOO23124.1  15 LYENGLNGILGDEMGLGKTVQSIAMLAHLNQ-----------QGVNGPFMVVGPLSTVHNWHNEFKKWAPGFESIIYHGSKETRKEILGSYFCGKAEKH 102
                 578899*********************3222...........34679**************************9999999999888888999999**** PP

                 --EEEE-HHHHHHHT......TTS-S-S-SEEEES-GGGT--TTSHHHHHHHH--..-S-EEEE-S--SSS-HHHHHHHHHHH-TTT.T--HH.HHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxx.xxxxx RF
      SNF2_N 150 ydvvittYdvlsreaelqkkrsvlkqvewkrvvlDEghtlknstskaaeavskLs..tsnrwiltGTPiqnsledlygLlkfLreep.fgekq.tfdkl 244
                 + v+it+Y+++ r++      ++lk+++wk+ ++DEgh+lkn ++++   ++++   + nr++ltGTP+qn+l++l++Ll+fL +++ ++++q +fd  
  KOO23124.1 103 FPVMITSYEIVIRDV------KELKKIHWKFAIIDEGHRLKNMNCRLIRELKSICgaGCNRLLLTGTPLQNNLIELWSLLNFLLPNIdLDSFQaWFDFD 195
                 ***************......9*******************************875589**************************98344444477777 PP

                 THHHHH.......HHHHHHHHHHHTT-STTEE---GGGT--S---EEEEEEEEE--HHHHHHHH....................HHHHHH-HHH-HHHH CS
                 xxxxxx.......xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
      SNF2_N 245 lqrpie.......aqaekgrsrLlqllqrlmlrrakkdveknlPpkteeiiflklskverksYnrllevlrkkalakllkrseaalkssskskekilel 336
                 ++r+ +       + +   +s+L+q+l++++lrr k+dve ++P+k e i+f  +++ + ++Y            +  +++++ a k ++     + ++
  KOO23124.1 196 FSREDNdervfkgEMQAGVVSKLHQILRPFLLRRLKADVELEVPKKYEFILFAWMTEWQSEMYA----------ELLKRQIADSAGKPQR-----LQNI 279
                 777666******98899999********************************************..........2233344444444444.....8899 PP

                 HHHHHHHHH---X CS
                 xxxxxxxxxxxxx RF
      SNF2_N 337 llelrqacnhpql 349
                 l++lr++cnhp+l
  KOO23124.1 280 LMQLRKCCNHPYL 292
                 ***********98 PP

>> Helicase_C  Helicase conserved C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.0   0.0      0.29     1e+03      39      62 ..      70      94 ..      39     138 .. 0.78
   2 !   62.8   0.0   9.3e-21   3.3e-17       4     111 .]     321     430 ..     315     430 .. 0.88

  Alignments for each domain:
  == domain 1  score: 0.0 bits;  conditional E-value: 0.29
                T...TSTEEEESTTSTHHHHHHHHHHH CS
  Helicase_C 39 k...gikvavlhgelpqnereeileqf 62
                k   g++++++hg  +++ r+eil ++
  KOO23124.1 70 KwapGFESIIYHG--SKETRKEILGSY 94
                2346999999999..889999988765 PP

  == domain 2  score: 62.8 bits;  conditional E-value: 9.3e-21
                 HHHHHHHHHTTTTSEEEEEESSHHHHHH.HHHHHHHTTSTEEEESTTSTHHHHHHHHHHHH...TTSSS.EEEESGGGTSSSTSTTESEEEESSSSSSH CS
  Helicase_C   4 eallellkleeeggkilifvntidrlek.vklllekkgikvavlhgelpqnereeileqfn...kgesd.vLiatdvaerGidipkvnlVinfdlprnv 97 
                 ++l+el+ +++ ++++ if++ +++l+   ++l e +++++++l+g+ ++++r ++++ f+   +g +d +L++t++++  ++++++++Vi+fd ++n+
  KOO23124.1 321 RILTELI-RKQGDHRVFIFSQMTRMLDIlQDYL-EWRKYSYCRLDGTVSAEDRMQSMKTFQeseEG-TDvFLLSTRAGGLDVNLTRADTVIIFDSDWNP 416
                 3455555.99****************8855555.7778**********************977444.566***************************** PP

                 HHHHHHHTTSSSTT CS
  Helicase_C  98 tsyiqriGRtgRag 111
                 +   q+ +R++R+g
  KOO23124.1 417 HMDLQAQDRCHRIG 430
                 ************97 PP

>> HDA2-3  Class II histone deacetylase complex subunits 2 and 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.9   0.1   8.6e-11   3.1e-07      48     288 ..     273     491 ..     226     494 .. 0.73

  Alignments for each domain:
  == domain 1  score: 29.9 bits;  conditional E-value: 8.6e-11
                 HHHHHHHH.HHHHHHH-GGGT--TT--S-.S-STTHHHHHHHT-HHHHHHHHHHHHHTTSS....EEEEEEE-STHHHHHHHHHHTTSSSEEEESSS-- CS
      HDA2-3  48 ikslticlenlslvanHPsLLvdHympkk.lllkelpeklaetSgKFkvlndlvnliierkrksslnvlvvakskkeldLiEalllGkklkikrysgek 145
                  ++l+ +l +l+   nHP+L  +   p +    + + ++l+e SgK+++l +++  +i ++      v + ++  + ld++  +l  +k ++ r++g+ 
  KOO23124.1 273 PQRLQNILMQLRKCCNHPYLF-EW--PVDaAGNEAVDDILVEASGKMQLLDRILTELIRKQ--GDHRVFIFSQMTRMLDILQDYLEWRKYSYCRLDGTV 366
                 467777888999999****96.33..444045667889********************999..6689******************************98 PP

                 S--S---S-..................-SEEEEEEESS---TTTS--TT-S-EEEEEE-SST--TTSHHHHHHH---.-------EEEEEETTSHHHHH CS
      HDA2-3 146 lydekkkkskdtkknsrktkeklkkkihsltihllsttrqltkdksllenikfdliiafDssvdtsspsveslrtqn.rkknklpiirlvpinSieHvk 243
                   ++  +             +++++    +++ llst         +++ +++d +i fDs+ +++ +   + r ++  +k+++ ++rl +  ++e   
  KOO23124.1 367 SAEDRMQSM-----------KTFQESEEGTDVFLLSTR-AG---GLDVNLTRADTVIIFDSDWNPHMDLQAQDRCHRiGQKKTVMVYRLATAATVEEKV 450
                 877777766...........344455555666555554.43...345788999*************9988888877624455699************** PP

                 HHHTS-TT-HHHHHHHHHHHHHHTTTTT---TTTHHHHHTTTGGG CS
      HDA2-3 244 LcfkkdedepeylekvissivvlrdevGkLpddllpiyeqklkyl 288
                 L+  k++ + e+l   + s + +   +G+  d    + e++lk l
  KOO23124.1 451 LQAAKQKLKLEQL---VVS-KGKFKDIGEKTDKDAKLVENELKDL 491
                 **99333333333...222.2233445555554445555556665 PP

>> ResIII  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.5   0.0   3.8e-10   1.4e-06      26     169 ..      21     164 ..       1     166 [. 0.77
   2 ?   -0.5   0.1      0.29   1.1e+03      37      84 ..     433     480 ..     421     527 .. 0.66

  Alignments for each domain:
  == domain 1  score: 28.5 bits;  conditional E-value: 3.8e-10
                 EEEEEESTTSTHHHHHHHHHHHH-S.....-EEEEESSHHHHHHHHHHGGGGTGG....GEEEESSS-B--...............-SEEEEEHHHHHH CS
      ResIII  26 rglikmaTGtGKTlvaaklierllkkgkeekflflvprkslleqtleefkkflseaykeigkkvsgdkkka........kekdstnkkilvttiqslda 116
                 +g++  + G GKT+ ++++ ++l ++g +  f+++   +s +  + +efkk+++     ++ +++g k+++          k++++  +++t+++ + +
  KOO23124.1  21 NGILGDEMGLGKTVQSIAMLAHLNQQGVNGPFMVV-GPLSTVHNWHNEFKKWAPGF---ESIIYHGSKETRkeilgsyfCGKAEKHFPVMITSYEIVIR 115
                 56666678*****************9887666555.55677789**********96...44555555555555789999899999************** PP

                 TH........HHHTTT-SEEEEETGGGTTS.T..TTHHHHHT---.SEEEEEESS- CS
      ResIII 117 dseeeeeeseellrdrfdviiiDEaHrlgakk..swreilekfke.avllglTATp 169
                 d        +el++ + ++ iiDE Hrl+ ++   +re++  + + + +l lT+Tp
  KOO23124.1 116 DV-------KELKKIHWKFAIIDEGHRLKNMNcrLIRELKSICGAgCNRLLLTGTP 164
                 **.......89999999*************53334444333332258889999998 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 0.29
                 HHHHHHHHHHHH-S.....-EEEEESSHHHHHHHH...HHGGGGTGG.... CS
      ResIII  37 KTlvaaklierllkkgkeekflflvprkslleqtl...eefkkflseayke 84 
                 KT++ ++l+ + +    eek+l  + +k  leq+     +fk++ ++++k+
  KOO23124.1 433 KTVMVYRLATAATV---EEKVLQAAKQKLKLEQLVvskGKFKDIGEKTDKD 480
                 56666555555554...3466666666666666666666666666666554 PP

>> ERCC3_RAD25_C  ERCC3/RAD25/XPB C-terminal helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.1     4e-05      0.14      56     135 ..     327     414 ..     304     470 .. 0.72

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 4e-05
  ERCC3_RAD25_C  56 hekrgD.kiivfsDnvfaL...keyakklkkpy..iyGetseaerlkilqkfkknpkvntifl..skvgDtsiDlPeanvliqisshf 135
                      k+gD ++ +fs     L   ++y +  k+ y  + G++s ++r++ +++f+++++   +fl   + g   ++l +a  +i  +s+ 
     KOO23124.1 327 IRKQGDhRVFIFSQMTRMLdilQDYLEWRKYSYcrLDGTVSAEDRMQSMKTFQESEEGTDVFLlsTRAGGLDVNLTRADTVIIFDSDW 414
                    4455553688999877665111445444444454478*******************99999983335666677788888887776655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (562 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       569  (0.0317363); expected 358.6 (0.02)
Passed bias filter:                      425  (0.0237046); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.56u 0.29s 00:00:00.85 Elapsed: 00:00:00.44
# Mc/sec: 3834.33
//
Query:       KOO23125.1  [L=625]
Description: hypothetical protein Ctob_001304 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.6e-30  105.6   0.0    9.1e-19   67.9   0.0    2.3  2  His_Phos_1  Histidine phosphatase superfamily (branch 1)
    1.9e-19   69.9   0.0    1.1e-17   64.2   0.0    2.1  2  6PF2K       6-phosphofructo-2-kinase
  ------ inclusion threshold ------
        0.1   12.4   0.0        6.9    6.5   0.0    2.3  2  GP46        Phage protein GP46


Domain annotation for each model (and alignments):
>> His_Phos_1  Histidine phosphatase superfamily (branch 1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.3   0.0   1.5e-12   9.2e-09       1      63 [.     286     355 ..     286     364 .. 0.84
   2 !   67.9   0.0   1.5e-22   9.1e-19      70     184 ..     483     595 ..     475     602 .. 0.94

  Alignments for each domain:
  == domain 1  score: 35.3 bits;  conditional E-value: 1.5e-12
                 EEEEE---BTTB--....TT----B-HHHHHHHHHHHHHHTT...S---EE.........EE-SSHHHHHHHHHH CS
  His_Phos_1   1 lyLvRHGetewnaegrlqgrtdvpLteeGreqAealaerlag...epidai.........ysSplkRarqTaeli 63 
                 +yL RHG++e+n+ g+++g  ++pL+  G+e A++l++++ +   +   +          ++S l+R++ Tae+i
  KOO23125.1 286 IYLSRHGQSEYNVMGKIGG--NPPLSTAGEEYARRLGKWVPDnicR---TPdgrpiksrlWTSSLQRTILTAEHI 355
                 8*************97665..79****************8884442...33344567779*************98 PP

  == domain 2  score: 67.9 bits;  conditional E-value: 1.5e-22
                 -EEE-GGGS----GGGTT-B.HHHHHH..HSHHHHHHHHH-GGG-BS-BHHHHHHHHHHHHHHHHHHTTTSEEEEEE-HHHHHHHHHHHHT--GGGGGG CS
  His_Phos_1  70 pveldegLrEidfGdweglttaeiaeeypeeleawlrdpadvrppggEsledvaaRvaaaleelaarhegetvlvVsHggvirallarllglpleelrr 168
                 ++++  +L+Ei  G++eg+++++i++ +pee   ++ d+  +r+p+gEs+ d+ aR+++ ++e+++  e   vl+VsH++v+r+l+a+l+  p + +++
  KOO23125.1 483 SPRVYRNLDEIFAGEYEGMSYEDIERLMPEEASLRSMDKIGYRYPRGESYFDILARLDPLVHEMESYREP--VLIVSHQAVLRVLYAYLMAKPRSSAPK 579
                 6677889*********************************************************998887..*************************** PP

                 B---TT-EEEEEE-SS CS
  His_Phos_1 169 leldnaslsvlefdeg 184
                 +e++ +++ ++++d+ 
  KOO23125.1 580 IEIPLHTIMKITYDGW 595
                 ************9975 PP

>> 6PF2K  6-phosphofructo-2-kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    3.5   0.0    0.0063        38      37      86 ..      57     106 ..      52     110 .. 0.91
   2 !   64.2   0.0   1.8e-21   1.1e-17     107     223 .]     165     283 ..     141     283 .. 0.94

  Alignments for each domain:
  == domain 1  score: 3.5 bits;  conditional E-value: 0.0063
                 HHHTT--EEEEEHHHHHHHHHSS---GGGGSTT-HHHHHHHHHHHHHHHH CS
       6PF2K  37 lkwlgvrtkvFnvgkyrreaskalsdaeffrpdneealklreklalaalk 86 
                 l  +g++ +vFn+++y    s  +++ae    d ++ +++r+++a + ++
  KOO23125.1  57 LCIIGLPERVFNIADYAVGPSGCDENAETLLDDVRKFMEKRNEAASNNMD 106
                 667999**************************************999875 PP

  == domain 2  score: 64.2 bits;  conditional E-value: 1.8e-21
                 -SHHHHHHHHHHHHHTT...-EEEEEEEE--HHHHHHHHHHHHTTTSGGGTTS-HHHHHHHHHHHHHHHHTT-----.TTTTTTSEEEEEETTTTEEEE CS
       6PF2K 107 ttrerRklilefveenn...lkvlflesicsdeeiikeNikevklsspDYkdketeeaikdflkRlenyekqyepld.deedeelsyIkvidvgkslvv 201
                 t++erR+++ +++ + +    k +f+e+i++++++i++Ni+ +        +++++ a+ ++  ++++y ++y  l+ d ++ +lsyIk+ + g +++ 
  KOO23125.1 165 TSKERRQWLATTLAQDRvmgAKLIFIEVIVNQPHLIEANIRAKRRA--QGLGETSAAAMREHHIKVKHYARMYVTLQdDGSEDDLSYIKLYNYGGKVIT 261
                 799*********999887779*********************9988..7799999*********************9788999**************** PP

                 E---SHHHHHHHHHHTT---S- CS
       6PF2K 202 nnvqgylqsrivyyllNihlkp 223
                 n+++gyl  ri  +l  +h++p
  KOO23125.1 262 NRMHGYLRMRIAQFLTTVHTTP 283
                 ***************9999876 PP

>> GP46  Phage protein GP46
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.5   0.0    0.0012       6.9       6      48 ..     146     187 ..     143     205 .. 0.87
   2 ?    3.4   0.0      0.01        61      32      59 ..     322     353 ..     309     357 .. 0.73

  Alignments for each domain:
  == domain 1  score: 6.5 bits;  conditional E-value: 0.0012
        GP46   6 vlisLFtdrraeaddelpdgaedrrGwwgDafedegdpiGSrl 48 
                 v i + td+ a+ +++   ++++rr+w + ++++ ++ +G +l
  KOO23125.1 146 VAIMMSTDANATFKEKWSGTSKERRQWLATTLAQ-DRVMGAKL 187
                 556666************988***********99.78999998 PP

  == domain 2  score: 3.4 bits;  conditional E-value: 0.01
        GP46  32 wwgDafed..egdpiGSrlWl..lrRekltte 59 
                 w+ D      +g+pi SrlW+  l+R++lt+e
  KOO23125.1 322 WVPDNICRtpDGRPIKSRLWTssLQRTILTAE 353
                 5556554437899*******755888888765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (625 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       388  (0.0216409); expected 358.6 (0.02)
Passed bias filter:                      354  (0.0197445); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.55u 0.27s 00:00:00.82 Elapsed: 00:00:00.44
# Mc/sec: 4288.10
//
Query:       KOO23126.1  [L=615]
Description: glycosyl transferase group 1 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    7.4e-08   32.9   0.0      2e-07   31.5   0.0    1.7  1  Glyco_trans_1_4  Glycosyl transferases group 1


Domain annotation for each model (and alignments):
>> Glyco_trans_1_4  Glycosyl transferases group 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.5   0.0   1.1e-11     2e-07       3     129 ..     188     346 ..     186     350 .. 0.72

  Alignments for each domain:
  == domain 1  score: 31.5 bits;  conditional E-value: 1.1e-11
                      EEEEES--.-G.G.GTHHHHHHHH.HHHH.H.H.EEEEEES---..........HHHHHHHTT-.....................T.TEEEE-- CS
  Glyco_trans_1_4   3 vilfvGrl.ee.nvkgvdllleav.pllrkk.d.vrlvivGdgp.rp.......eeleelaagl.....................eerveftGf 62 
                      +i+f+G+  ++ n+ g++++le + + ++++ + vr+ ++G+ p ++       +                              e+++  +G+
       KOO23126.1 188 NIGFIGNGmTPtNHLGIQWFLEHCwEDVQRQlPgVRMRLIGRPPgERvvrgkpvQ--------CvqtedahcgwawgtpyagaekENGIDELGY 273
                      799***876889*****************88658*******65444334433221........1333444556678888888876688****** PP

                      -..THHHHHHHH-SEEEE--...---SHHHHHHHHTT-EEEE-TGGG.TTT--.TTSSEE--TT-.HHHHHHHHH CS
  Glyco_trans_1_4  63 v..edlaellaaadvfvaPs...egfglkllEamaaglpvVatdvgg.iaevv.gengllvppgd.pealaeail 129
                      +  e+l   + + +++++P     g++ k+l a+ +g+p V t+v++ + ++  +e+  +v+  d +  ++++ +
       KOO23126.1 274 LsaEELLVEVLSWRLMIVPVlrtTGVNTKILVALELGVPLVITPVAAsPFDLPdNET--IVAFADqALNFVQQTV 346
                      *8767666666789******9766*********************641334333333..3333344667776665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (615 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       385  (0.0214736); expected 358.6 (0.02)
Passed bias filter:                      346  (0.0192983); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.54u 0.28s 00:00:00.82 Elapsed: 00:00:00.45
# Mc/sec: 4132.04
//
Query:       KOO23127.1  [L=558]
Description: amine oxidase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.8e-12   47.4   0.0      3e-12   46.7   0.0    1.3  1  FKBP_C    FKBP-type peptidyl-prolyl cis-trans isomerase


Domain annotation for each model (and alignments):
>> FKBP_C  FKBP-type peptidyl-prolyl cis-trans isomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.7   0.0   1.6e-16     3e-12       5      94 .]      70     175 ..      67     175 .. 0.79

  Alignments for each domain:
  == domain 1  score: 46.7 bits;  conditional E-value: 1.6e-16
                 B-TTCEEEEEEEEEE....T.TSSEEEEHCCHTSEEEEETTSSSSCHHHHHHHTTSBTT-EEEEEEEGGGTTTT........TTBCTTT........B. CS
      FKBP_C   5 akegdtVtvhykgkl....e.dgkvfdssrsrakplefkvGsgqvikGfeealegmkvGekrtltippelaYge........kglaggv........ip 82 
                 ++ g+  ++hy+g+     +     fdss++r + + +k G+g  ++G+eeal +m+vG++r++  pp l+Y +                       + 
  KOO23127.1  70 PRFGQLLRFHYVGYApntqKrTLVSFDSSYDRRSAYLVKHGNGFTCQGIEEALHTMRVGGRRRVVLPPALGYTAdkgpmppgA-----GarsklfdaVT 163
                 66689999*******6643223678************************************************9444444332.....03333455566 PP

                 TTSEEEEEEEEE CS
      FKBP_C  83 pnatLvFeveLl 94 
                 +++ L+F+ eL+
  KOO23127.1 164 AGEPLIFDLELV 175
                 66******9995 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (558 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       234  (0.0130515); expected 358.6 (0.02)
Passed bias filter:                      194  (0.0108205); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.23s 00:00:00.71 Elapsed: 00:00:00.40
# Mc/sec: 4184.11
//
Query:       KOO23128.1  [L=213]
Description: conserved unknown protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.8e-63  214.5   0.1    2.1e-63  214.2   0.1    1.1  1  DUF3326   Protein of unknown function (DUF3326)


Domain annotation for each model (and alignments):
>> DUF3326  Protein of unknown function (DUF3326)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  214.2   0.1   1.2e-67   2.1e-63     165     336 ..       1     172 [.       1     173 [. 0.98

  Alignments for each domain:
  == domain 1  score: 214.2 bits;  conditional E-value: 1.2e-67
     DUF3326 165 fPddldsealqeyrqgkgvdplaGaEavishlvvrefqipcAHaPalsplpldeevspraaaeelgytfLpcvLvgLsraPqlvekkeelsaaealsae 263
                 +Pdd+d+e+l+eyr+g+gvd ++G+Eavishl+++e+q+pcAHaPal p +l++e+spr++aeelg+tfLpcvLv+L+raP l+  +e+   +++l+ +
  KOO23128.1   1 MPDDEDEEMLAEYRAGSGVDSVGGVEAVISHLITKELQLPCAHAPALGPIDLEPELSPRTCAEELGHTFLPCVLVNLARAPALLDGSER-PLPGDLWSD 98 
                 6*************************************************************************************999.99******* PP

     DUF3326 264 dvdavvvPasalGgsavlalaekkikiiaVeeNetvlevtpeklgik.vievesYleAiGvlvalkaginlkal 336
                 d+da+vvPa+a+Gg+av+a + ++  ++aVeeN+++l+v++++l+ + v+ v++Y+eA+G+l+a+kag+n+++l
  KOO23128.1  99 DIDAIVVPAGACGGAAVMARLGTRSLVVAVEENTCALDVSAAALRASgVVVVNNYMEALGLLAAHKAGVNPACL 172
                 ********************************************9886889********************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (213 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       248  (0.0138323); expected 358.6 (0.02)
Passed bias filter:                      185  (0.0103185); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.26s 00:00:00.63 Elapsed: 00:00:00.39
# Mc/sec: 1653.18
//
Query:       KOO23129.1  [L=973]
Description: DNA mismatch repair protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.5e-39  135.3   0.0    3.9e-39  134.6   0.0    1.2  1  MutS_V    MutS domain V
    3.5e-10   40.1   0.0    7.4e-10   39.1   0.0    1.5  1  MutS_I    MutS domain I
  ------ inclusion threshold ------
      0.018   15.3   0.0       0.06   13.6   0.0    1.8  1  GIY-YIG   GIY-YIG catalytic domain


Domain annotation for each model (and alignments):
>> MutS_V  MutS domain V
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  134.6   0.0   6.5e-43   3.9e-39       1     177 [.     714     894 ..     714     902 .. 0.92

  Alignments for each domain:
  == domain 1  score: 134.6 bits;  conditional E-value: 6.5e-43
                 EEEE-STTSSHHHHHHHHHHHHHHHHHT--BSSSEEEEE--SEEEEEE--------SS-HHHHHHHHHHHHHTT--TTSEEEEESTS-SS-HHHHHHHH CS
      MutS_V   1 llitGpnmaGkstylrqvalivllaqiGsfvpaekaeisivdkiftRvgasDdlakgkstFmvEmlEtasilknatekslvilDElGRGtstydGlaia 99 
                 +l+t pnmaGks+++r++ +++lla+ G   p ++a+++  d+ f R ++ D  a+gks+F +Em +++ + ++ t++sl++lDE+GRGtst++G+a++
  KOO23129.1 714 WLLTAPNMAGKSSLMRSMLVAALLANSGLLAPVRSATVPRYDAFFLRTTSFDAPAEGKSAFAQEMDDLQLMTREGTRRSLLMLDEIGRGTSTNEGTALS 812
                 689************************************************************************************************ PP

                 HHHHHHHHHTT--EEEEEES-GGGGGHHHHSTTEEEEEEEEE.....EETTEEEEEEEEEES--SS--HHHHHHHTT--HHHH CS
      MutS_V 100 lavaeyllekikaktlfatHyheltklaekleevknlhlavk.....eeeedivflykvkegaaeksyGikvaklaglPesvv 177
                  a++e+l +  +  ++fatH hel +l ++l+++ +l+  +        + +i++  +++eg++++s  ++va+ aglP++++
  KOO23129.1 813 AALLEWLDR-HQMSAVFATHLHELESLLARLPTLPSLRWMCLpvaeaAADGRIAMSFTLSEGMSRNSLALHVARGAGLPADLL 894
                 *******87.78999**************99887765554444444477899***************************9876 PP

>> MutS_I  MutS domain I
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.1   0.0   1.2e-13   7.4e-10      11     107 ..      87     180 ..      80     185 .. 0.87

  Alignments for each domain:
  == domain 1  score: 39.1 bits;  conditional E-value: 1.2e-13
                 CHH-TTCEEEEEETTEEEEECHHHHHHHHHCSSSSTT.ESSSSC.EEEEEEEHHHHHHHHHHHHHTT-EEEEEEE-S-HHHH....S.S--EEEEEEEB CS
      MutS_I  11 kkkykdavlffrvGdfYelfgeDAviaareleitltkrkkssekeipmagvPehalekylrkLvekgykVavveqtetpaek....kgvvkrevvrviT 105
                 k+k +d +l++rvG+fYe+fg DA++  +  +++ +  k         ag P ++++  l+ L ++g +Vav+e +  + +     +++ +r +++v++
  KOO23129.1  87 KEKRPDQLLLIRVGEFYEAFGFDALMLVQWAGLNPMGSK-------CRAGCPVQNVQATLDALTSAGLTVAVYEEVAPAGTGegrfRKLKQRVLAQVVS 178
                 7899*****************************999322.......368***************************66655577774599999999999 PP

                 TT CS
      MutS_I 106 pG 107
                 p+
  KOO23129.1 179 PA 180
                 97 PP

>> GIY-YIG  GIY-YIG catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.0     1e-05      0.06      13      73 ..     909     960 ..     904     964 .. 0.84

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 1e-05
                 --EEEEEESSHHHHHHHHHHHHHHT--S-HS.STEEEEEEEE----HHHHHHHHHHHHHHT CS
     GIY-YIG  13 kliYvGstknlekRlkqHnagkkakytrkkgkkpfeliileifptksealelEkklikkyk 73 
                   +YvG++ ++ +Rl+qH + +         ++ +  ++l + ++ks a elE+++i+++k
  KOO23129.1 909 PALYVGESDSIGRRLQQHRRRH---------ADRLLECVLVEVESKSAARELETRTIRRLK 960
                 568***************9877.........556666788899999999999999999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (973 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       423  (0.0235931); expected 358.6 (0.02)
Passed bias filter:                      324  (0.0180713); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.63u 0.32s 00:00:00.95 Elapsed: 00:00:00.44
# Mc/sec: 6572.14
//
Query:       KOO23130.1  [L=679]
Description: uridine kinase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.3e-08   33.2   0.1    7.1e-08   32.2   0.1    1.5  1  CSD       'Cold-shock' DNA-binding domain
  ------ inclusion threshold ------
       0.05   13.3   0.5       0.11   12.2   0.5    1.5  1  OB_RNB    Ribonuclease B OB domain


Domain annotation for each model (and alignments):
>> CSD  'Cold-shock' DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.2   0.1   7.9e-12   7.1e-08       2      34 ..       5      37 ..       4      43 .. 0.91

  Alignments for each domain:
  == domain 1  score: 32.2 bits;  conditional E-value: 7.9e-12
                EEEEEEEETTTTEEEEEETTSS-EEEEETTTS- CS
         CSD  2 tGtVkwfnakkgfGFItredgdkdvFvHvsaiq 34
                tG++k f+a+kg+GFI ++d + dvF+H  ++ 
  KOO23130.1  5 TGSIKFFSADKGYGFILPDDSSGDVFFHRHSLA 37
                8***************************87765 PP

>> OB_RNB  Ribonuclease B OB domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.5   1.2e-05      0.11       6      29 ..      13      36 ..       9      38 .. 0.86

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 1.2e-05
                -SSS-EEEEECT.TEEEEE-HHHH CS
      OB_RNB  6 hkkGFGFlipdegkeDifippeqm 29
                 +kG+GF+ pd+ + D+f +++ +
  KOO23130.1 13 ADKGYGFILPDDSSGDVFFHRHSL 36
                579***************988765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (679 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       487  (0.0271627); expected 358.6 (0.02)
Passed bias filter:                      388  (0.0216409); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.59u 0.24s 00:00:00.83 Elapsed: 00:00:00.43
# Mc/sec: 4751.97
//
Query:       KOO23131.1  [L=325]
Description: hypothetical protein Ctob_001298 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.7e-07   31.6  17.8    3.8e-07   30.5  17.8    1.5  1  TFIIA          Transcription factor IIA, alpha/beta subunit
    2.2e-05   24.5   0.0      6e-05   23.1   0.0    1.8  1  TFIIA_gamma_C  Transcription initiation factor IIA, gamma sub
  ------ inclusion threshold ------
      0.074   12.4   8.7      0.091   12.1   8.7    1.1  1  BUD22          BUD22


Domain annotation for each model (and alignments):
>> TFIIA  Transcription factor IIA, alpha/beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.5  17.8   6.4e-11   3.8e-07     308     413 ..     174     322 ..      92     324 .. 0.63

  Alignments for each domain:
  == domain 1  score: 30.5 bits;  conditional E-value: 6.4e-11
       TFIIA 308 adlseilqlDGagddsde............eeeeeesdedsdsessddedeq........................veEDplNSdDDvddeddddlfdt 370
                 + + +   +D  +d +d+            +          d++++dde+++                         eE+plNSdDD+dded+    d+
  KOO23131.1 174 RPAAQRHAFDEDDDFDDDdvvvatnaaraeD----------DEDDEDDEEGLapeagaddgvlgpdpnevedgeevDEEEPLNSDDDEDDEDERA-GDG 261
                 2333444455444444443333322222110..........1111111111123333344445555556666668899************99988.555 PP

       TFIIA 371 dn..............vivCqYDKvhRsKNKWKftLKDGv..mtvnGkd..YVFsKAiGea 413
                                 +++ q+DKv R+   WK  L+ G   + ++Gk   Y F++A  e+
  KOO23131.1 262 ALadgavgplnadvvnLVLAQFDKVRRTGELWKLSLRAGMahLVIEGKNnhYAFARADCEF 322
                 4467899********************************8445567775449999998877 PP

>> TFIIA_gamma_C  Transcription initiation factor IIA, gamma subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.1   0.0     1e-08     6e-05       2      45 .]      44      94 ..      43      94 .. 0.88

  Alignments for each domain:
  == domain 1  score: 23.1 bits;  conditional E-value: 1e-08
  TFIIA_gamma_C  2 fKgkLdtYrfcDdVWtFiiknvefklen.......detvkvdkvKIVACns 45
                   +K++++ Yr +D+V+tF+++++  + +          ++kv ++K VA +s
     KOO23131.1 44 IKASVEWYRSVDNVYTFMLRDAICTGSAftgiagpLWSIKVGRMKLVAVDS 94
                   7999*******************9999999998776777999999999775 PP

>> BUD22  BUD22
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   8.7   1.5e-05     0.091     156     252 ..     167     255 ..      73     269 .. 0.51

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 1.5e-05
       BUD22 156 kkkkkkeeee.....eeesdkeeesedsed......eekeeseddeeeeeededdedaee..............deedeeaeerelaqydgllasdded 229
                 +++      e     + ++ + +e++d +d      ++++++edde++e+++       e               + +e ++ +e+ + +         
  KOO23131.1 167 AEE------EayerpAAQRHAFDEDDDFDDddvvvaTNAARAEDDEDDEDDE-------EglapeagaddgvlgPDPNEVEDGEEVDEEEP-------- 244
                 111......1111222222333333333332333322222222222211111.......11112233444444422233333333333333........ PP

       BUD22 230 edeyneetdeesseesdssdsse 252
                              +++d++d+++
  KOO23131.1 245 ------------LNSDDDEDDED 255
                 ............22222222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (325 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       732  (0.0408277); expected 358.6 (0.02)
Passed bias filter:                      462  (0.0257683); expected 358.6 (0.02)
Passed Vit filter:                        52  (0.00290033); expected 17.9 (0.001)
Passed Fwd filter:                        18  (0.00100396); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.60u 0.28s 00:00:00.88 Elapsed: 00:00:00.43
# Mc/sec: 2286.26
//
Query:       KOO23132.1  [L=817]
Description: serine threonine-protein kinase nek9 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    4.1e-51  173.9   0.0    5.4e-51  173.5   0.0    1.1  1  Pkinase         Protein kinase domain
    1.4e-43  147.3  19.9    1.2e-08   35.5   0.2    9.3  9  RCC1            Regulator of chromosome condensation (RCC1) r
    4.2e-31  108.2   0.1    4.1e-29  101.7   0.1    2.2  1  Pkinase_Tyr     Protein tyrosine kinase
    2.7e-23   81.2  39.4      1e-06   28.4   1.4    6.9  7  RCC1_2          Regulator of chromosome condensation (RCC1) r
    0.00013   21.4   0.0    0.00083   18.8   0.0    1.9  1  Kinase-like     Kinase-like
      0.006   15.4   0.0     0.0093   14.8   0.0    1.2  1  Pkinase_fungal  Fungal protein kinase
  ------ inclusion threshold ------
      0.042   13.8   0.3       0.23   11.4   0.0    2.3  2  APH             Phosphotransferase enzyme family
      0.065   13.4   0.1       0.47   10.7   0.0    2.4  2  DUF2795         Protein of unknown function (DUF2795)


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  173.5   0.0   2.4e-54   5.4e-51      13     263 ..       2     283 ..       1     284 [. 0.91

  Alignments for each domain:
  == domain 1  score: 173.5 bits;  conditional E-value: 2.4e-54
                 EEEEEEEETTTTEEEEEEEEECHCHCHHHHHHHHHHHHHHHHHSCTTB--EEEEEEESSEEEEEEE--TTEBHHHHHH...HHSS--HHHHHHHHHHHH CS
     Pkinase  13 GkVykaveketgkivAvKkikkekakkkkekkvlrEikilkklkhpnivrlyevfeekdelylvleyveggeladlle...rkgslseeeakkiakqil 108
                 G+V  +++k++g++ A+K+++  + +++++k++l E+++l +l+hpni++++e f++ d+l++v+e+++ + l+ + +   + + l+ee++ +i++q++
  KOO23132.1   2 GTVHLVTRKRDGRQLALKRVNFADLSHEERKQTLLEVALLSRLRHPNIIEYVEHFHDGDDLCIVMEVAPDDVLKVVRRakaAGTPLPEEQLLSILSQVA 100
                 99*******************************************************************8876666556644555************** PP

                 HHHHHHHHTTEE-SS-SGGGEEEETTTEEEE-SGTTSEESSSSCS........................BCTTTSCGGGS-HHHH.....TTSCBSHHH CS
     Pkinase 109 egleylHskgiiHrDlKpeNiLidekgelKitDFGlakelesssk........................ltsfvgtseYlAPEvl.....keneyskkv 178
                 ++l+y Hs +++HrD+Kp+N+L+  +g  K++DFG+++ + +++                           +  gt+ Y+APE+       ++ ys+++
  KOO23132.1 101 SALHYAHSCRVLHRDVKPANVLLTADGTPKLSDFGISCTVMQHELslgralvkradgvretefeaaadiRVELKGTPAYMAPELFnhkmeMNTTYSAAS 199
                 ***************************************9999889**********************99999************8776555889**** PP

                 HHHHHHHHHHHHHHSS-STTTSSHHHHHHHHHHTHHHHHHHCTSHH...HHHTTS-HHHHHHHHHHT-SSGCCSTTHHHHHTSGG CS
     Pkinase 179 DvWslGvilyelltgkppfsgekgkekvekeldqlekilkilgetkeklpeaseiseeakdllkkllkkdpkkRltaeellqhpy 263
                 DvW+lGv+++el+  + p++g +  + v+k +++  +   + +    + + +++ s+ +   ++ +l+k p++R t  ell+ ++
  KOO23132.1 200 DVWALGVMMFELMLFRLPYEGASMMSIVYKLVNN-PSQNALTDARGAHGRGHTQYSQAMYACVEAMLHKRPQQRATLPELLSRQV 283
                 ********************99999988888888.33333444666778888999************************998765 PP

>> RCC1  Regulator of chromosome condensation (RCC1) repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.2   0.1      0.53   1.2e+03       3      10 ..     314     321 ..     314     325 .. 0.86
   2 !    7.2   0.3    0.0036       8.1      36      50 .]     335     349 ..     324     349 .. 0.81
   3 !   35.5   0.2   5.2e-12   1.2e-08       1      50 []     352     405 ..     352     405 .. 0.88
   4 !   18.6   0.2   9.4e-07    0.0021       3      20 ..     411     428 ..     411     446 .. 0.90
   5 !   12.0   0.0   0.00011      0.26      16      50 .]     506     544 ..     500     544 .. 0.84
   6 !   20.3   0.0   2.7e-07   0.00062       2      49 ..     548     611 ..     547     612 .. 0.81
   7 !   24.2   0.0   1.8e-08   3.9e-05       2      49 ..     616     670 ..     615     671 .. 0.81
   8 !    5.9   0.0     0.009        20       2      49 ..     675     722 ..     674     723 .. 0.80
   9 !   28.9   0.0   5.9e-10   1.3e-06       1      44 [.     726     772 ..     726     777 .. 0.90

  Alignments for each domain:
  == domain 1  score: 0.2 bits;  conditional E-value: 0.53
                 EEEEEE-- CS
        RCC1   3 rVysWGrn 10 
                 +Vys+Gr+
  KOO23132.1 314 DVYSFGRG 321
                 59****98 PP

  == domain 2  score: 7.2 bits;  conditional E-value: 0.0036
                 -EEEEEEETTEEEEE CS
        RCC1  36 rvvkvacGddhtval 50 
                  + +vacG+ h++++
  KOO23132.1 335 QIRQVACGAAHCAVV 349
                 689*********985 PP

  == domain 3  score: 35.5 bits;  conditional E-value: 5.2e-12
                 TTEEEEEE--GGGTTSSSS---EEEEEE-GGGTTS....-EEEEEEETTEEEEE CS
        RCC1   1 dGrVysWGrndyGqLGlgttesvlvPtkveglsgn....rvvkvacGddhtval 50 
                 +G+V++WGrn+ GqLG+g++++ ++ ++v + ++      v  vacG  ht+a+
  KOO23132.1 352 SGEVFTWGRNECGQLGHGDRKQLSLRRRVLFAEEVegavVVRGVACGFAHTIAI 405
                 69******************99988899977776688767777*********97 PP

  == domain 4  score: 18.6 bits;  conditional E-value: 9.4e-07
                 EEEEEE--GGGTTSSSS- CS
        RCC1   3 rVysWGrndyGqLGlgtt 20 
                 r+y+WG++ +GqLGlg+ 
  KOO23132.1 411 RLYAWGSDKHGQLGLGSG 428
                 79*************975 PP

  == domain 5  score: 12.0 bits;  conditional E-value: 0.00011
                 SSSS-.--EEEEEE-GGGTTS...-EEEEEEETTEEEEE CS
        RCC1  16 Glgtt.esvlvPtkveglsgn...rvvkvacGddhtval 50 
                 Gl +  ++vl+Pt +++  ++    +  vacGd+h++a+
  KOO23132.1 506 GLRDPmDCVLTPTALRTVLDDvaeAWAVVACGDRHSAAI 544
                 66666688999*9998888888988888*********98 PP

  == domain 6  score: 20.3 bits;  conditional E-value: 2.7e-07
                 TEEEEEE--GGGTTSS...SS---EEEEEE-GGGTTS.............-EEEEEEETTEEEE CS
        RCC1   2 GrVysWGrndyGqLGl...gttesvlvPtkveglsgn.............rvvkvacGddhtva 49 
                 G+ y+WG+ d+G+LG    + + +vl P+k++++ +              +   v cGd +t+ 
  KOO23132.1 548 GSAYAWGSADDGRLGVllvPGESRVLAPRKLPLSLRVpetareleghlegHLAMVDCGDEFTCY 611
                 889*************8875557778888886666656666777777999***********986 PP

  == domain 7  score: 24.2 bits;  conditional E-value: 1.8e-08
                 TEEEEEE--GGGTTSSSS-..--EEEEEE-.....GGGTTS....-EEEEEEETTEEEE CS
        RCC1   2 GrVysWGrndyGqLGlgtt..esvlvPtkv.....eglsgn....rvvkvacGddhtva 49 
                 Gr++++G n +GqLG+ +    +v +P+++     +    +     +  +acG+ h++a
  KOO23132.1 616 GRLWGCGANYDGQLGIDDPdvGEVGTPMRLipwgpT----DpddvGIDFIACGATHVAA 670
                 9***************7777788899*877655533....455568888*******998 PP

  == domain 8  score: 5.9 bits;  conditional E-value: 0.009
                 TEEEEEE--GGGTTSSSS---EEEEEE-GGGTTS.....-EEEEEEETTEEEE CS
        RCC1   2 GrVysWGrndyGqLGlgttesvlvPtkveglsgn.....rvvkvacGddhtva 49 
                 Gr++ WG    G+ G ++t+ + +P + e + ++     +   vacG+d ++ 
  KOO23132.1 675 GRLWLWG----GRFGMPPTKVR-LPGRYEDPADEnalgsPCALVACGADLVFT 722
                 8899999....88888888555.588887777667888899********9986 PP

  == domain 9  score: 28.9 bits;  conditional E-value: 5.9e-10
                 TTEEEEEE--GGGTTSSSS-.--EEEEEE-GGGTTS..-EEEEEEET CS
        RCC1   1 dGrVysWGrndyGqLGlgtt.esvlvPtkveglsgn..rvvkvacGd 44 
                 dG+ ++WG +++G+LGl +  +s+  P+ +++ls+   rv  vac  
  KOO23132.1 726 DGDAFTWGEGSHGRLGLDDGaQSHEAPQSLASLSAPpvRVLMVACSK 772
                 8****************999777788****99998899*******76 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  101.7   0.1   1.8e-32   4.1e-29      23     254 ..       8     273 ..       1     281 [. 0.74

  Alignments for each domain:
  == domain 1  score: 101.7 bits;  conditional E-value: 1.8e-32
                  TTTSSEEEEEEEEES.TTSSHHHHHHHHHHHHHHHTS-BTTB--EEEEEESSSSEEEEEE--TTEBHHHHHHHT.CTTTSBHHHHHHHHHHHHHHHHH CS
  Pkinase_Tyr  23 ekekkevkVavKtlk.eeateeekeelleeakimkklkhpnivkllgvctkeepllivteyvkgGdLlkfLrkk.ekekltlkdllsfalqvAkGmey 118
                  +++++  + a+K ++ ++ ++ee+++ l e++++++l+hpni++++    +++ l+iv+e ++   L+   r+k + ++l  ++lls+  qvA++++y
   KOO23132.1   8 TRKRDGRQLALKRVNfADLSHEERKQTLLEVALLSRLRHPNIIEYVEHFHDGDDLCIVMEVAPDDVLKVVRRAKaAGTPLPEEQLLSILSQVASALHY 105
                  445778899999996467888899*************************************999877766665545788999**************** PP

                  HHHTTEEEST-SGGGEEEEETTEEEE-STTTHEETTTSSEE.....................EETTSSTSGGGGS-HHHHHHSE.....EEHHHHHHH CS
  Pkinase_Tyr 119 LeskklvHrdlaarNvLlsenkvvkisDfGLardiekddey.....................vkkeeaklpvkWmapEslkekk.....ftsksDvWs 190
                   +s +++Hrd+   NvLl+ + + k+sDfG++ ++++++                         + e k    +mapE +++k      ++ +sDvW+
   KOO23132.1 106 AHSCRVLHRDVKPANVLLTADGTPKLSDFGISCTVMQHELSlgralvkradgvretefeaaaDIRVELKGTPAYMAPELFNHKMemnttYSAASDVWA 203
                  ********************************99988765545555443333222211111111223344557********99899999********* PP

                  HHHHHHHHHTTSSGTTTTSHHHHHHHHH.HTTEE..S-BBTTS....BHHHHHHHHHHT-SSGGGS--HHH CS
  Pkinase_Tyr 191 fGvllwEiftlgespypglkneevlekl.kegkr..lekpekc....peelyelmkkcweedpeeRptfse 254
                   Gv+++E++   + py+g + ++++ kl ++  +  l+  + +    +++  + m  c e+  ++Rp+ ++
   KOO23132.1 204 LGVMMFELML-FRLPYEGASMMSIVYKLvNNPSQnaLTDARGAhgrgHTQYSQAMYACVEAMLHKRPQQRA 273
                  ********98.799*99996666555542443331233322221222456667777777777777766443 PP

>> RCC1_2  Regulator of chromosome condensation (RCC1) repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.0       1.5   3.3e+03      19      25 ..     311     320 ..     300     322 .. 0.69
   2 !   28.4   1.4   4.6e-10     1e-06       1      30 []     336     365 ..     336     365 .. 0.98
   3 !   22.6   0.3     3e-08   6.6e-05       3      30 .]     394     422 ..     392     422 .. 0.94
   4 !   22.7   1.7   2.8e-08   6.3e-05       4      29 ..     534     559 ..     531     560 .. 0.92
   5 !   21.8   1.1   5.1e-08   0.00012       4      30 .]     602     628 ..     600     628 .. 0.96
   6 ?    1.9   1.1     0.095   2.1e+02       4      24 ..     661     681 ..     658     682 .. 0.93
   7 !    7.4   0.4    0.0017       3.8       4      29 ..     713     738 ..     711     739 .. 0.82

  Alignments for each domain:
  == domain 1  score: -1.9 bits;  conditional E-value: 1.5
      RCC1_2  19 e...VlcWGs 25 
                 +   V+++G+
  KOO23132.1 311 RlpdVYSFGR 320
                 3666*****7 PP

  == domain 2  score: 28.4 bits;  conditional E-value: 4.6e-10
      RCC1_2   1 VksvsaGdyHscaLtedGeVlcWGsNsdGQ 30 
                 +++v++G+ H  ++  +GeV++WG+N++GQ
  KOO23132.1 336 IRQVACGAAHCAVVAVSGEVFTWGRNECGQ 365
                 789**************************9 PP

  == domain 3  score: 22.6 bits;  conditional E-value: 3e-08
      RCC1_2   3 svsaGdyHscaLtedGe.VlcWGsNsdGQ 30 
                  v++G  H++a+   G+ +++WGs+ +GQ
  KOO23132.1 394 GVACGFAHTIAIAQHGRrLYAWGSDKHGQ 422
                 59************9999**********9 PP

  == domain 4  score: 22.7 bits;  conditional E-value: 2.8e-08
      RCC1_2   4 vsaGdyHscaLtedGeVlcWGsNsdG 29 
                 v++Gd+Hs a+t+ G  ++WGs +dG
  KOO23132.1 534 VACGDRHSAAITTAGSAYAWGSADDG 559
                 89*******************97777 PP

  == domain 5  score: 21.8 bits;  conditional E-value: 5.1e-08
      RCC1_2   4 vsaGdyHscaLtedGeVlcWGsNsdGQ 30 
                 v +Gd ++c ++e G+++++G N dGQ
  KOO23132.1 602 VDCGDEFTCYVDEAGRLWGCGANYDGQ 628
                 67************************9 PP

  == domain 6  score: 1.9 bits;  conditional E-value: 0.095
      RCC1_2   4 vsaGdyHscaLtedGeVlcWG 24 
                 +++G+ H  a ++ G+++ WG
  KOO23132.1 661 IACGATHVAAADTLGRLWLWG 681
                 9*****************999 PP

  == domain 7  score: 7.4 bits;  conditional E-value: 0.0017
      RCC1_2   4 vsaGdyHscaLtedGeVlcWGsNsdG 29 
                 v++G++  + +t+dG+ ++WG  s+G
  KOO23132.1 713 VACGADLVFTVTDDGDAFTWGEGSHG 738
                 566666666689**********9999 PP

>> Kinase-like  Kinase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.8   0.0   3.7e-07   0.00083     204     254 ..     168     222 ..      89     239 .. 0.70

  Alignments for each domain:
  == domain 1  score: 18.8 bits;  conditional E-value: 3.7e-07
  Kinase-like 204 e........kgfaPpEllgsrggytrknktkmthkldaWqlGlviyriwclklPltlat 254
                            ++  pEl+++++      +t+++ + d+W+lG+ ++ +  + lP + a 
   KOO23132.1 168 DirvelkgtPAYMAPELFNHKME----MNTTYSAASDVWALGVMMFELMLFRLPYEGAS 222
                  04444544468999******776....89*************************98754 PP

>> Pkinase_fungal  Fungal protein kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.0   4.1e-06    0.0093     306     392 ..      90     188 ..      79     197 .. 0.74

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 4.1e-06
  Pkinase_fungal 306 kellealrDaIkghrsLflkagiLHrDiSenNilitdskkegerkglLiDLDlakelsddsses.....gare..................rtGT 377
                     ++ll+ l ++  ++   +  +++LHrD+   N+l+t     ++ +  L+D+ + +++ +++ +      +  +                    GT
      KOO23132.1  90 EQLLSILSQVASALHYAH-SCRVLHRDVKPANVLLT-----ADGTPKLSDFGISCTVMQHELSLgralvK--RadgvretefeaaadirveLKGT 176
                     689999999999999999.*****************.....66777788888888777533333333330..03444444555555555559999 PP

  Pkinase_fungal 378 leFmaievlkgeeHs 392
                     +++ma e+ +   H+
      KOO23132.1 177 PAYMAPELFN---HK 188
                     9999999887...54 PP

>> APH  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.0   0.1      0.15   3.3e+02      16     103 ..       6     104 ..       3     110 .. 0.66
   2 ?   11.4   0.0    0.0001      0.23     140     194 ..      88     135 ..      48     182 .. 0.72

  Alignments for each domain:
  == domain 1  score: 1.0 bits;  conditional E-value: 0.15
                 EEETT-...-EEEEEE-TT....S-HHHHHHHHHHHHHHHHTT-..B--B-CTTBS-EEETTEEEEEEE----EE-SS......HHHHHHHHHHHHHHH CS
         APH  16 vttpag...ryvlrrnppa....raaeeirrevallrlLakagv..pvPevlagdtddeeigllfalieyvpgrsllr......klsaaqlpellealg 99 
                 ++t ++   +++l+r++ a    ++  ++  evall  L+  ++  +v e ++   d++++ +++++ +    ++++r      +l ++ql  +l +++
  KOO23132.1   6 LVTRKRdgrQLALKRVNFAdlshEERKQTLLEVALLSRLRHPNIieYV-EHFH---DGDDLCIVMEVAPDDVLKVVRRakaagtPLPEEQLLSILSQVA 100
                 444443335999999888877777788888999999999977775333.5555...8888888888888777777777666555555555555555555 PP

                 HHHC CS
         APH 100 efla 103
                 ++l 
  KOO23132.1 101 SALH 104
                 5555 PP

  == domain 2  score: 11.4 bits;  conditional E-value: 0.0001
                 CTCCHHHHHHHHHHHHHHHH--SSS-EEEE-SS-SGGGEEEC..TTEEEEE---T CS
         APH 140 elldlleeleeqvlaalaallpgelptvllHgDlhpgNllvdpddgrvtGviDfe 194
                       e+l + +l ++a  l+ + + ++lH+D +p N+l+++d+++   + Df+
  KOO23132.1  88 P----EEQLLS-ILSQVASALHYAHSCRVLHRDVKPANVLLTADGTPK--LSDFG 135
                 2....244555.6667777777777899**************777765..66665 PP

>> DUF2795  Protein of unknown function (DUF2795)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.0      0.97   2.2e+03      22      32 ..      69      79 ..      67      96 .. 0.75
   2 ?   10.7   0.0   0.00021      0.47       9      32 ..     280     303 ..     279     303 .. 0.94

  Alignments for each domain:
  == domain 1  score: -1.0 bits;  conditional E-value: 0.97
     DUF2795 22 ApdevleaLea 32
                Apd+vl+ +++
  KOO23132.1 69 APDDVLKVVRR 79
                67777777665 PP

  == domain 2  score: 10.7 bits;  conditional E-value: 0.00021
     DUF2795   9 tKdeLveyArrngApdevleaLea 32 
                 +++ L+ +Ar  gAp++ +++Le+
  KOO23132.1 280 SRQVLLHHARGGGAPKRFIDLLEE 303
                 7999******************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (817 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       359  (0.0200234); expected 358.6 (0.02)
Passed bias filter:                      335  (0.0186848); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.62u 0.28s 00:00:00.90 Elapsed: 00:00:00.43
# Mc/sec: 5686.07
//
Query:       KOO23133.1  [L=655]
Description: radial spoke protein 7 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    3.9e-33  110.5  11.6    2.9e-05   23.3   0.0    7.8  7  EF-hand_1     EF hand
    7.6e-30  103.2   7.3    6.9e-09   36.0   0.1    4.7  4  EF-hand_7     EF-hand domain pair
      7e-28   96.2   8.8    1.9e-10   40.4   0.7    5.9  7  EF-hand_8     EF-hand domain pair
    2.3e-27   92.5   7.1    7.8e-06   25.4   0.0    7.7  7  EF-hand_6     EF-hand domain
    3.2e-21   73.8   6.2    8.7e-06   25.0   0.0    6.9  6  EF-hand_5     EF hand
    2.7e-09   36.8   0.0    4.6e-09   36.1   0.0    1.4  1  AKAP28        28 kDa A-kinase anchor
    3.6e-09   36.5   4.8      0.031   14.2   0.2    5.0  5  EF-hand_4     Cytoskeletal-regulatory complex EF hand
    3.9e-08   33.6   1.4      0.017   15.4   0.1    3.6  4  SPARC_Ca_bdg  Secreted protein acidic and rich in cysteine Ca
      0.001   18.9   3.8       0.63    9.9   0.1    4.0  4  EF-hand_10    EF hand
     0.0038   17.2   8.2       0.71    9.8   0.2    3.5  4  TerB          Tellurite resistance protein TerB
  ------ inclusion threshold ------
      0.035   13.7   0.0      0.084   12.5   0.0    1.7  1  DUF3050       Protein of unknown function (DUF3050)


Domain annotation for each model (and alignments):
>> EF-hand_1  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.0   2.7e-06    0.0044       4      27 ..     182     205 ..     179     207 .. 0.91
   2 !   18.2   0.0   7.3e-07    0.0012       2      22 ..     216     236 ..     215     239 .. 0.93
   3 !   20.3   0.0   1.6e-07   0.00025       4      29 .]     286     311 ..     283     311 .. 0.92
   4 !   16.0   0.3   3.9e-06    0.0063       1      26 [.     322     347 ..     322     349 .. 0.91
   5 ?    2.6   0.0     0.072   1.2e+02       9      27 ..     378     396 ..     375     398 .. 0.89
   6 !   23.3   0.0   1.8e-08   2.9e-05       3      26 ..     476     499 ..     474     501 .. 0.92
   7 !   12.8   1.3   3.9e-05     0.064       2      26 ..     511     535 ..     510     537 .. 0.90

  Alignments for each domain:
  == domain 1  score: 16.5 bits;  conditional E-value: 2.7e-06
                 HHHHHHTTTSSSEEEHHHHHHHHH CS
   EF-hand_1   4 eiFrefDkDgdGkIdfeEfkellk 27 
                  iF++ D Dg+ ++d +Ef++ll+
  KOO23133.1 182 SIFKDGDADGNRYLDPKEFRTLLE 205
                 69*******************997 PP

  == domain 2  score: 18.2 bits;  conditional E-value: 7.3e-07
                 HHHHHHHHTTTSSSEEEHHHH CS
   EF-hand_1   2 lkeiFrefDkDgdGkIdfeEf 22 
                 +++i +++D +gdGkI++ Ef
  KOO23133.1 216 VRQILMLADANGDGKIEYAEF 236
                 68999***************9 PP

  == domain 3  score: 20.3 bits;  conditional E-value: 1.6e-07
                 HHHHHHTTTSSSEEEHHHHHHHHHHH CS
   EF-hand_1   4 eiFrefDkDgdGkIdfeEfkellkkl 29 
                  +Fr fDkD++G++++ E +e+lk+l
  KOO23133.1 286 SAFRSFDKDNSGRLERGEIVECLKSL 311
                 79*********************986 PP

  == domain 4  score: 16.0 bits;  conditional E-value: 3.9e-06
                 HHHHHHHHHTTTSSSEEEHHHHHHHH CS
   EF-hand_1   1 elkeiFrefDkDgdGkIdfeEfkell 26 
                 e+k i++ +D D +G+I+++Ef  l+
  KOO23133.1 322 EIKMIMSFIDEDESGTIEYNEFAPLM 347
                 79********************7665 PP

  == domain 5  score: 2.6 bits;  conditional E-value: 0.072
                 HTTTSSSEEEHHHHHHHHH CS
   EF-hand_1   9 fDkDgdGkIdfeEfkellk 27 
                 +D   dG+++ + +k+++ 
  KOO23133.1 378 YDAEEDGRLTTKMLKAAMI 396
                 9**************9995 PP

  == domain 6  score: 23.3 bits;  conditional E-value: 1.8e-08
                 HHHHHHHTTTSSSEEEHHHHHHHH CS
   EF-hand_1   3 keiFrefDkDgdGkIdfeEfkell 26 
                 +++F+ +D Dg+Gk+d+ Ef+++l
  KOO23133.1 476 RNVFQAYDADGSGKLDRAEFQKCL 499
                 789******************997 PP

  == domain 7  score: 12.8 bits;  conditional E-value: 3.9e-05
                 HHHHHHHHTTTSSSEEEHHHHHHHH CS
   EF-hand_1   2 lkeiFrefDkDgdGkIdfeEfkell 26 
                 +++++  +D + dG Id++Ef +l+
  KOO23133.1 511 IQKLMFAADENDDGAIDYNEFADLF 535
                 7889999**************9986 PP

>> EF-hand_7  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.7   0.1   3.5e-09   5.7e-06       7      67 ..     183     237 ..     176     239 .. 0.89
   2 !   36.0   0.1   4.2e-12   6.9e-09       4      70 ..     284     347 ..     282     348 .. 0.91
   3 ?    4.9   0.0     0.022        37       8      65 ..     375     427 ..     369     430 .. 0.85
   4 !   35.5   1.1     6e-12   9.8e-09       5      69 ..     476     534 ..     473     536 .. 0.86

  Alignments for each domain:
  == domain 1  score: 26.7 bits;  conditional E-value: 3.5e-09
   EF-hand_7   7 aFkelDtdgdgyldkeellrllrkifqgagegsklsdeelellfkefDtdkdGvisfdEFl 67 
                 +Fk  D dg+ yld+ e++ ll+        +  l++ ++++++   D ++dG+i + EF 
  KOO23133.1 183 IFKDGDADGNRYLDPKEFRTLLE------TSQLGLDESSVRQILMLADANGDGKIEYAEFA 237
                 69999**************9999......6777778889*********************6 PP

  == domain 2  score: 36.0 bits;  conditional E-value: 4.2e-12
   EF-hand_7   4 lkeaFkelDtdgdgyldkeellrllrkifqgagegsklsdeelellfkefDtdkdGvisfdEFlkly 70 
                 l  aF+++D+d++g+l++ e+ + l+++      + kl++ e++ ++  +D d +G+i ++EF  l+
  KOO23133.1 284 LLSAFRSFDKDNSGRLERGEIVECLKSLQ---LGATKLTPREIKMIMSFIDEDESGTIEYNEFAPLM 347
                 5679****************999999887...889999999**********************8766 PP

  == domain 3  score: 4.9 bits;  conditional E-value: 0.022
   EF-hand_7   8 FkelDtdgdgyldkeellrllrkifqgagegsklsdeelellfkefDtdkdGvisfdE 65 
                   ++D   dg+l+   l+ ++          +kl++ +l++++ +   d+ G++  + 
  KOO23133.1 375 LASYDAEEDGRLTTKMLKAAMIE-----ADLVKLTPIQLQTVLADAPVDSEGKVMISN 427
                 578***************97776.....899999999999999999999999986655 PP

  == domain 4  score: 35.5 bits;  conditional E-value: 6e-12
   EF-hand_7   5 keaFkelDtdgdgyldkeellrllrkifqgagegsklsdeelellfkefDtdkdGvisfdEFlkl 69 
                 + +F+++D dg+g+ld++e+++   ++f   + +  l ++++++l+   D ++dG i+++EF  l
  KOO23133.1 476 RNVFQAYDADGSGKLDRAEFQK---CLF---ESKLGLNEHQIQKLMFAADENDDGAIDYNEFADL 534
                 678****************996...333...6666667889*********************876 PP

>> EF-hand_8  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.1   0.0     0.013        20      29      53 ..     181     205 ..     177     207 .. 0.90
   2 !   22.7   0.0     4e-08   6.6e-05       4      49 ..     194     237 ..     191     240 .. 0.87
   3 !    7.0   0.1    0.0032       5.2      22      53 ..     274     309 ..     264     311 .. 0.75
   4 !   30.5   0.0   1.5e-10   2.4e-07       2      54 ..     296     349 ..     295     350 .. 0.94
   5 ?   -1.3   0.0       1.3   2.1e+03       1      50 [.     382     430 ..     382     434 .. 0.69
   6 !   11.5   0.0   0.00012       0.2      29      54 ..     476     501 ..     475     502 .. 0.89
   7 !   40.4   0.7   1.2e-13   1.9e-10       2      54 ..     487     537 ..     486     538 .. 0.93

  Alignments for each domain:
  == domain 1  score: 5.1 bits;  conditional E-value: 0.013
   EF-hand_8  29 dilfrefDtdgdGkisfeEFcvlle 53 
                  ++f+ +D dg+ +++ +EF  lle
  KOO23133.1 181 VSIFKDGDADGNRYLDPKEFRTLLE 205
                 589*****************99997 PP

  == domain 2  score: 22.7 bits;  conditional E-value: 4e-08
   EF-hand_8   4 kItreelrril.rilglkkglseeevdilfrefDtdgdGkisfeEFc 49 
                 ++++ e+r+ l ++ +l   l e+ v+ +++++D +gdGki + EF 
  KOO23133.1 194 YLDPKEFRTLLeTS-QLG--LDESSVRQILMLADANGDGKIEYAEFA 237
                 789******88555.555..**************************7 PP

  == domain 3  score: 7.0 bits;  conditional E-value: 0.0032
   EF-hand_8  22 glseeevdil....frefDtdgdGkisfeEFcvlle 53 
                 gl+eee+ ++    fr fD d++G++   E +++l+
  KOO23133.1 274 GLGEEEIVEMllsaFRSFDKDNSGRLERGEIVECLK 309
                 689999666545557889********9999998886 PP

  == domain 4  score: 30.5 bits;  conditional E-value: 1.5e-10
   EF-hand_8   2 kgkItreelrrilrilglkk.glseeevdilfrefDtdgdGkisfeEFcvller 54 
                 +g + r e +++l++l+l   +l++ e+ ++++ +D+d++G+i ++EF  l+++
  KOO23133.1 296 SGRLERGEIVECLKSLQLGAtKLTPREIKMIMSFIDEDESGTIEYNEFAPLMFN 349
                 5889999******999988899******************************97 PP

  == domain 5  score: -1.3 bits;  conditional E-value: 1.3
   EF-hand_8   1 ekgkItreelrril.rilglkk..glseeevdilfrefDtdgdGkisfeEFcv 50 
                 e+g +t+  l+ ++  +    +  +l++ ++++++  +  d  Gk++   F+ 
  KOO23133.1 382 EDGRLTTKMLKAAMiEA----DlvKLTPIQLQTVLADAPVDSEGKVMISNFVG 430
                 57888999999988644....23348888888888777777777777666665 PP

  == domain 6  score: 11.5 bits;  conditional E-value: 0.00012
   EF-hand_8  29 dilfrefDtdgdGkisfeEFcvller 54 
                 + +f + D dg+Gk++  EF  +l++
  KOO23133.1 476 RNVFQAYDADGSGKLDRAEFQKCLFE 501
                 5689999*************999986 PP

  == domain 7  score: 40.4 bits;  conditional E-value: 1.2e-13
   EF-hand_8   2 kgkItreelrril.rilglkkglseeevdilfrefDtdgdGkisfeEFcvller 54 
                 +gk++r+e++++l  + +l   l+e++++ l+ ++D+++dG+i+++EF +l+++
  KOO23133.1 487 SGKLDRAEFQKCLfES-KLG--LNEHQIQKLMFAADENDDGAIDYNEFADLFFN 537
                 79***********976.666..*****************************996 PP

>> EF-hand_6  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.6   0.1   2.9e-05     0.047       2      28 ..     180     206 ..     179     212 .. 0.89
   2 !    9.4   0.0   0.00064       1.1       3      22 ..     217     236 ..     215     238 .. 0.89
   3 !   19.7   0.0   3.2e-07   0.00052       2      30 ..     284     311 ..     283     314 .. 0.91
   4 !    7.1   0.0    0.0035       5.7       5      24 ..     326     345 ..     317     357 .. 0.84
   5 ?    3.5   0.0     0.051        83       9      26 ..     378     395 ..     375     400 .. 0.90
   6 !   25.4   0.0   4.8e-09   7.8e-06       3      27 ..     476     500 ..     474     505 .. 0.89
   7 !    9.6   0.2   0.00059      0.96       9      26 ..     518     535 ..     510     541 .. 0.85

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 2.9e-05
   EF-hand_6   2 lreaFklfDkdgdGkidaeElrkalrk 28 
                 l ++Fk  D dg+ ++d++E+r +l +
  KOO23133.1 180 LVSIFKDGDADGNRYLDPKEFRTLLET 206
                 6799*******************9986 PP

  == domain 2  score: 9.4 bits;  conditional E-value: 0.00064
   EF-hand_6   3 reaFklfDkdgdGkidaeEl 22 
                 r++ +l D +gdGki ++E+
  KOO23133.1 217 RQILMLADANGDGKIEYAEF 236
                 7788899************9 PP

  == domain 3  score: 19.7 bits;  conditional E-value: 3.2e-07
   EF-hand_6   2 lreaFklfDkdgdGkidaeElrkalrkal 30 
                 l +aF+ fDkd++G + + E++ +l+ +l
  KOO23133.1 284 LLSAFRSFDKDNSGRLERGEIVECLK-SL 311
                 679**********************9.65 PP

  == domain 4  score: 7.1 bits;  conditional E-value: 0.0035
   EF-hand_6   5 aFklfDkdgdGkidaeElrk 24 
                 +   +D d +G+i ++E+  
  KOO23133.1 326 IMSFIDEDESGTIEYNEFAP 345
                 55678************975 PP

  == domain 5  score: 3.5 bits;  conditional E-value: 0.051
   EF-hand_6   9 fDkdgdGkidaeElrkal 26 
                 +D + dG ++++ l++a+
  KOO23133.1 378 YDAEEDGRLTTKMLKAAM 395
                 99*************998 PP

  == domain 6  score: 25.4 bits;  conditional E-value: 4.8e-09
   EF-hand_6   3 reaFklfDkdgdGkidaeElrkalr 27 
                 r +F+++D dg+Gk+d++E++k+l 
  KOO23133.1 476 RNVFQAYDADGSGKLDRAEFQKCLF 500
                 789********************97 PP

  == domain 7  score: 9.6 bits;  conditional E-value: 0.00059
   EF-hand_6   9 fDkdgdGkidaeElrkal 26 
                  D ++dG id++E+ +++
  KOO23133.1 518 ADENDDGAIDYNEFADLF 535
                 69************9976 PP

>> EF-hand_5  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.1   0.0     0.044        72       2      25 .]     181     204 ..     180     204 .. 0.85
   2 !   15.2   0.0   6.9e-06     0.011       6      21 ..     221     236 ..     216     239 .. 0.86
   3 !   12.0   0.0   6.8e-05      0.11       4      21 ..     287     304 ..     284     308 .. 0.85
   4 ?    4.9   0.0     0.012        19       6      21 ..     328     343 ..     324     347 .. 0.89
   5 !   25.0   0.0   5.4e-09   8.7e-06       4      24 ..     478     498 ..     475     499 .. 0.91
   6 !    9.6   0.4   0.00041      0.67       7      23 ..     517     533 ..     511     535 .. 0.87

  Alignments for each domain:
  == domain 1  score: 3.1 bits;  conditional E-value: 0.044
                 HHHHHHH-SS-SSCE-HHHHHHHH CS
   EF-hand_5   2 kdtFqaiDlNgDGkIskeELktlv 25 
                 +  F+  D++g  ++++ E++tl+
  KOO23133.1 181 VSIFKDGDADGNRYLDPKEFRTLL 204
                 56799999999999*******985 PP

  == domain 2  score: 15.2 bits;  conditional E-value: 6.9e-06
                 HHH-SS-SSCE-HHHH CS
   EF-hand_5   6 qaiDlNgDGkIskeEL 21 
                   +D+NgDGkI   E+
  KOO23133.1 221 MLADANGDGKIEYAEF 236
                 579************9 PP

  == domain 3  score: 12.0 bits;  conditional E-value: 6.8e-05
                 HHHHH-SS-SSCE-HHHH CS
   EF-hand_5   4 tFqaiDlNgDGkIskeEL 21 
                 +F+ +D++++G++ + E 
  KOO23133.1 287 AFRSFDKDNSGRLERGEI 304
                 5************99886 PP

  == domain 4  score: 4.9 bits;  conditional E-value: 0.012
                 HHH-SS-SSCE-HHHH CS
   EF-hand_5   6 qaiDlNgDGkIskeEL 21 
                 + iD + +G+I   E+
  KOO23133.1 328 SFIDEDESGTIEYNEF 343
                 579************9 PP

  == domain 5  score: 25.0 bits;  conditional E-value: 5.4e-09
                 HHHHH-SS-SSCE-HHHHHHH CS
   EF-hand_5   4 tFqaiDlNgDGkIskeELktl 24 
                 +Fqa D++g+Gk+++ E++++
  KOO23133.1 478 VFQAYDADGSGKLDRAEFQKC 498
                 8******************96 PP

  == domain 6  score: 9.6 bits;  conditional E-value: 0.00041
                 HH-SS-SSCE-HHHHHH CS
   EF-hand_5   7 aiDlNgDGkIskeELkt 23 
                 a+D N DG I+  E+  
  KOO23133.1 517 AADENDDGAIDYNEFAD 533
                 79*************76 PP

>> AKAP28  28 kDa A-kinase anchor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.1   0.0   2.8e-12   4.6e-09      10     120 ..       4     106 ..       1     107 [. 0.80

  Alignments for each domain:
  == domain 1  score: 36.1 bits;  conditional E-value: 2.8e-12
      AKAP28  10 ekgleqIeefiktwelskswlyliefleekeaekskiyiyrvrwSiptrrkPipratasvyFtikvskikpkeapvevtyvfEgsrlvhrpgksrfrek 108
                 +k+ e ++ + ++w l  s++++++ ++++ ++    + + v +S+p ++kP+p+ +a + Ft+k     + ea   v+y++E+++  + pg+  +r++
  KOO23133.1   4 KKAFEAVDGLCQSWALG-SYVHHVRHVKDRAEQG---HEFLVIFSMPQPTKPVPELVATATFTVKPR--GEGEA-PRVSYIIEKQKNRF-PGERPIRKQ 94 
                 67788888888999874.6899997766666555...5599***********************655..33333.489*******9988.56667**** PP

      AKAP28 109 wlkdiiesKlil 120
                 wl+  i+ K+i+
  KOO23133.1  95 WLDAAIRRKAIV 106
                 *********986 PP

>> EF-hand_4  Cytoskeletal-regulatory complex EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.4   0.0   3.5e-05     0.056      14      66 ..     182     237 ..     166     261 .. 0.83
   2 ?    4.8   0.0     0.016        26      25      69 ..     298     347 ..     275     357 .. 0.67
   3 ?    0.1   0.0      0.49   7.9e+02      38      72 ..     401     436 ..     361     449 .. 0.74
   4 !   14.2   0.2   1.9e-05     0.031      14      66 ..     477     532 ..     465     549 .. 0.83
   5 ?    0.3   0.0      0.42   6.9e+02      53      83 ..     559     589 ..     545     601 .. 0.80

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 3.5e-05
   EF-hand_4  14 eifs.glkpednkltgdkvapvlknskl..eedklekiwdladidedgkldfeefc 66 
                  if+ g  + +++l  ++  ++l+ s+l  +e+ + +i  lad + dgk+++ ef+
  KOO23133.1 182 SIFKdGDADGNRYLDPKEFRTLLETSQLglDESSVRQILMLADANGDGKIEYAEFA 237
                 56752455678899999999******9633678899*******************7 PP

  == domain 2  score: 4.8 bits;  conditional E-value: 0.016
   EF-hand_4  25 kltgdkvapvlkn.....skleedklekiwdladidedgkldfeefciam 69 
                 +l   ++   lk+     +kl+  +++ i ++ d de g+++++ef+  m
  KOO23133.1 298 RLERGEIVECLKSlqlgaTKLTPREIKMIMSFIDEDESGTIEYNEFAPLM 347
                 55555555666651111145555566789999999999********8655 PP

  == domain 3  score: 0.1 bits;  conditional E-value: 0.49
   EF-hand_4  38 skleedklekiwdladidedgkldfeefci.amrli 72 
                  kl+  +l+ +   a +d++gk+   +f+  a r+i
  KOO23133.1 401 VKLTPIQLQTVLADAPVDSEGKVMISNFVGpAARMI 436
                 366777999999999999999999999973255555 PP

  == domain 4  score: 14.2 bits;  conditional E-value: 1.9e-05
   EF-hand_4  14 eifsglkp.ednkltgdkvapvlknskl..eedklekiwdladidedgkldfeefc 66 
                 ++f++ +   + kl   +    l +skl  +e++++k+   ad ++dg +d++ef+
  KOO23133.1 477 NVFQAYDAdGSGKLDRAEFQKCLFESKLglNEHQIQKLMFAADENDDGAIDYNEFA 532
                 6788876515679999999999*9999533899**********************7 PP

  == domain 5  score: 0.3 bits;  conditional E-value: 0.42
   EF-hand_4  53 didedgkldfeefciamrlifdlvngeikdv 83 
                  i    ++ ++e++i ++l fd+  g +++ 
  KOO23133.1 559 SIKASFMFLLDELMIPLHLAFDIASGGQDSC 589
                 55556667789************98877665 PP

>> SPARC_Ca_bdg  Secreted protein acidic and rich in cysteine Ca binding region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.9   0.0   3.2e-05     0.052      39     111 ..     164     237 ..     140     238 .. 0.76
   2 ?    0.7   0.0      0.38   6.1e+02      49     110 ..     277     343 ..     245     345 .. 0.60
   3 ?   -3.2   0.0       6.1     1e+04      53      77 ..     368     392 ..     356     405 .. 0.63
   4 !   15.4   0.1   1.1e-05     0.017      43     111 ..     462     532 ..     434     534 .. 0.83

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 3.2e-05
  SPARC_Ca_bdg  39 elekkeeeknlkeckepvawkFsklDtnsdkvlsksELapl..raplvklehCikpflescDadkdkkislkEwc 111
                   +  ++ +e + +e ++ +   F++ D + +++l+ +E + l  +++l   e+ +++ l+ +Da+ d+ki+ +E++
    KOO23133.1 164 AALQQMFE-SDAELEQLLVSIFKDGDADGNRYLDPKEFRTLleTSQLGLDESSVRQILMLADANGDGKIEYAEFA 237
                   33344443.345566677778******************99333468899***********************96 PP

  == domain 2  score: 0.7 bits;  conditional E-value: 0.38
  SPARC_Ca_bdg  49 lkeckepvawkFsklDtnsdkvlsksELaplraplv....k.lehCikpflescDadkdkkislkEw 110
                    +e++e +   F ++D+++ + l++ E+ +  ++l     k + + ik  ++  D d+ ++i+ +E+
    KOO23133.1 277 EEEIVEMLLSAFRSFDKDNSGRLERGEIVECLKSLQlgatKlTPREIKMIMSFIDEDESGTIEYNEF 343
                   5667777888899999999999999997665444321111212233555566666666666666665 PP

  == domain 3  score: -3.2 bits;  conditional E-value: 6.1
  SPARC_Ca_bdg  53 kepvawkFsklDtnsdkvlsksELa 77 
                   +e +  +  + D ++d+ l+++ L+
    KOO23133.1 368 VEYLSMHLASYDAEEDGRLTTKMLK 392
                   5555556666777777777776665 PP

  == domain 4  score: 15.4 bits;  conditional E-value: 1.1e-05
  SPARC_Ca_bdg  43 keeeknlkeckepvawkFsklDtnsdkvlsksELap..lraplvklehCikpflescDadkdkkislkEwc 111
                     + +++k+ ++ ++  F+  D +  + l+++E ++   +++l  +eh i++++ ++D ++d+ i+ +E++
    KOO23133.1 462 AITPEEQKRLTNMARNVFQAYDADGSGKLDRAEFQKclFESKLGLNEHQIQKLMFAADENDDGAIDYNEFA 532
                   45556677888889999*****************98435789***************************97 PP

>> EF-hand_10  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.2   0.0       0.1   1.6e+02       5      42 ..     198     235 ..     179     238 .. 0.60
   2 !    9.9   0.1   0.00039      0.63      27      50 .]     288     311 ..     283     311 .. 0.91
   3 ?    5.0   0.1     0.013        22      23      45 ..     475     497 ..     472     501 .. 0.91
   4 ?   -3.7   0.1       7.1   1.2e+04      29      44 ..     517     532 ..     508     536 .. 0.78

  Alignments for each domain:
  == domain 1  score: 2.2 bits;  conditional E-value: 0.1
  EF-hand_10   5 kEvkrlLreiNievddeYAekLFkkcDkSksgrLegeE 42 
                 kE ++lL    + +d++  +++   +D   +g++e  E
  KOO23133.1 198 KEFRTLLETSQLGLDESSVRQILMLADANGDGKIEYAE 235
                 55566666666666666666666666666666666555 PP

  == domain 2  score: 9.9 bits;  conditional E-value: 0.00039
  EF-hand_10  27 FkkcDkSksgrLegeEieeFyklL 50 
                 F+  Dk +sgrLe  Ei+e +k+L
  KOO23133.1 288 FRSFDKDNSGRLERGEIVECLKSL 311
                 999***************998876 PP

  == domain 3  score: 5.0 bits;  conditional E-value: 0.013
  EF-hand_10  23 AekLFkkcDkSksgrLegeEiee 45 
                 A+++F+  D   sg+L+  E+++
  KOO23133.1 475 ARNVFQAYDADGSGKLDRAEFQK 497
                 99******************975 PP

  == domain 4  score: -3.7 bits;  conditional E-value: 7.1
  EF-hand_10  29 kcDkSksgrLegeEie 44 
                  +D+  +g ++ +E+ 
  KOO23133.1 517 AADENDDGAIDYNEFA 532
                 5789999999999875 PP

>> TerB  Tellurite resistance protein TerB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.9   4.1    0.0034       5.6      30     140 ..     104     217 ..      79     221 .. 0.71
   2 ?    1.3   0.0      0.19     3e+02      57      88 ..     206     237 ..     196     255 .. 0.80
   3 !    9.8   0.2   0.00044      0.71      42     107 ..     488     551 ..     456     553 .. 0.82
   4 ?   -3.3   0.0         5   8.2e+03      58      91 ..     604     637 ..     602     640 .. 0.82

  Alignments for each domain:
  == domain 1  score: 6.9 bits;  conditional E-value: 0.0034
        TerB  30 laallaevakaDgqvsesErqafrellksrfglspeeakallelfeeaeeeavdle.qftralkrkls.peqrraliealweiAlADG..eldeaEdav 124
                 +++l +  + aD+   ++  + +    k++ ++ +++ + + e  e++ e a+dl  + ++al+++++ ++++++l+  +++ + ADG   ld++E + 
  KOO23133.1 104 AIVLECSAMFADKGRLPQPLAFVPGKYKAAQAIADAAFDGADENQERLMEAANDLAdAQAAALQQMFEsDAELEQLLVSIFKDGDADGnrYLDPKEFRT 202
                 555555555555555555555555555666666666666667777777777777651457788999988*******************66689***999 PP

        TerB 125 lrrvaelLglspadfi 140
                 l ++++ Lgl+++ ++
  KOO23133.1 203 LLETSQ-LGLDESSVR 217
                 999875.677777665 PP

  == domain 2  score: 1.3 bits;  conditional E-value: 0.19
        TerB  57 ksrfglspeeakallelfeeaeeeavdleqft 88 
                 +s++gl++  + ++l+l+++  + ++++ +f+
  KOO23133.1 206 TSQLGLDESSVRQILMLADANGDGKIEYAEFA 237
                 3589************************9998 PP

  == domain 3  score: 9.8 bits;  conditional E-value: 0.00044
        TerB  42 gqvsesErqafrellksrfglspeeakallelfeeaeeeavdleqftralkrklspeqrralieal 107
                 g+++++E q+   l++s++gl++ ++++l+ +++e  + a+d+ +f++ +   + + +r++ ie +
  KOO23133.1 488 GKLDRAEFQKC--LFESKLGLNEHQIQKLMFAADENDDGAIDYNEFADLFFNCMLEMTREQSIERM 551
                 45666666654..799*******************************9998877788888877766 PP

  == domain 4  score: -3.3 bits;  conditional E-value: 5
        TerB  58 srfglspeeakallelfeeaeeeavdleqftral 91 
                 +++g+ pe+++ l+++  e+ e av+ ++ ++ +
  KOO23133.1 604 EEWGVMPEAIDVLAARIMEHPEAAVGWHALCEMI 637
                 6788999999999999999999999998887665 PP

>> DUF3050  Protein of unknown function (DUF3050)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   5.2e-05     0.084     153     208 ..     342     399 ..     312     411 .. 0.88

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 5.2e-05
     DUF3050 153 dlipdmfrsllkelekkaeekeleklkyYleRhie.ldgdeHgplalkllee.lcgdd 208
                 +  p mf+ l++ l+  + ++e ++l+ Yl+ h+   d++e g+l++k+l++ +++ d
  KOO23133.1 342 EFAPLMFNYLVEALKLGFLQSESDDLVEYLSMHLAsYDAEEDGRLTTKMLKAaMIEAD 399
                 56799****************************9537************985145555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (655 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       726  (0.0404931); expected 358.6 (0.02)
Passed bias filter:                      564  (0.0314574); expected 358.6 (0.02)
Passed Vit filter:                        47  (0.00262145); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.63u 0.30s 00:00:00.93 Elapsed: 00:00:00.45
# Mc/sec: 4326.23
//
Query:       KOO23134.1  [L=422]
Description: hypothetical protein Ctob_001299 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
     0.0025   17.8   0.0     0.0048   16.9   0.0    1.4  1  rhaM      L-rhamnose mutarotase


Domain annotation for each model (and alignments):
>> rhaM  L-rhamnose mutarotase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   0.0   2.7e-07    0.0048      18     100 ..      55     140 ..      34     145 .. 0.76

  Alignments for each domain:
  == domain 1  score: 16.9 bits;  conditional E-value: 2.7e-07
        rhaM  18 klHaevwpevlealkeagirnysIyldee....gntLfailev.g..ddeeadaaaaaadpkvqeWwalmaklqeaapsaspakeeekwt 100
                   H+e+ p v ++l+e+gi ++  +l e+    + +L+ ++++    d +ea  ++ ++d   qeW++l+a++ +a +s    + + +++
  KOO23134.1  55 IKHEELLPSVRRMLREHGIVQFGSFLFEPpavsKPLLMLHMQIpVmlDAAEALPQLLQTDRIGQEWEQLVASVHDAPGS----RGRAWYE 140
                 56********************9999643222267788888884344666699999****************9996665....2234444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (422 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       372  (0.0207485); expected 358.6 (0.02)
Passed bias filter:                      339  (0.0189079); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.50u 0.23s 00:00:00.73 Elapsed: 00:00:00.42
# Mc/sec: 3009.31
//
Query:       KOO23135.1  [L=151]
Description: hypothetical protein Ctob_001296 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (151 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       216  (0.0120475); expected 358.6 (0.02)
Passed bias filter:                      202  (0.0112667); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.25s 00:00:00.62 Elapsed: 00:00:00.40
# Mc/sec: 1137.07
//
Query:       KOO23136.1  [L=71]
Description: hypothetical protein Ctob_001297 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (71 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       491  (0.0273858); expected 358.6 (0.02)
Passed bias filter:                      367  (0.0204696); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.29s 00:00:00.63 Elapsed: 00:00:00.43
# Mc/sec: 500.81
//
Query:       KOO23137.1  [L=168]
Description: hypothetical protein Ctob_001290, partial [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
       0.12   11.8   0.2       0.16   11.4   0.2    1.2  1  Shufflon_N  Bacterial shufflon protein, N-terminal constant r


Domain annotation for each model (and alignments):
>> Shufflon_N  Bacterial shufflon protein, N-terminal constant region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.2   8.7e-06      0.16     147     260 ..      41     158 ..      13     164 .. 0.75

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 8.7e-06
  Shufflon_N 147 vllstddlsgaaedsdrlyrfqvngrpdlnkmht...aidmgsnnlnnvGtvnanaaalsgn.vagrnGtfsgavkgnsnvtagGdir.snnGwlvtrn 240
                 + +  + lsg a  s  l+r+ v++  d   mh      + ++   nn+   +     +s+  +++  G    ++ gn  +t + d++ s n wl    
  KOO23137.1  41 MRFDLSALSGMAPISRALFRYTVSNVGDQAEMHEfrrGWNASTVTYNNLPMPTP-PWPFSAAvIETLWGPSVNDLAGNV-ATQTVDVTpSVNRWLTGTP 137
                 44555679999999*******************722234555556677766666.455665516778899999999999.88888887589******** PP

  Shufflon_N 241 skGwlnety.GGGlymsdssw 260
                 + Gw+   y G G  +  + w
  KOO23137.1 138 NHGWIFVPYfGNGCGIRTAAW 158
                 ****97654266666666666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (168 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       351  (0.0195772); expected 358.6 (0.02)
Passed bias filter:                      308  (0.0171789); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.23s 00:00:00.60 Elapsed: 00:00:00.38
# Mc/sec: 1319.71
//
Query:       KOO23138.1  [L=316]
Description: serine threonine phosphatase, partial [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    0.00033   20.5   0.9      0.024   14.4   0.2    2.2  2  TGFb_propeptide  TGF-beta propeptide


Domain annotation for each model (and alignments):
>> TGFb_propeptide  TGF-beta propeptide
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.8   0.0    0.0012        21     186     201 ..     104     119 ..     101     122 .. 0.91
   2 !   14.4   0.2   1.4e-06     0.024     181     206 ..     257     282 ..     191     287 .. 0.89

  Alignments for each domain:
  == domain 1  score: 4.8 bits;  conditional E-value: 0.0012
  TGFb_propeptide 186 gWlsfdvtaalnrWlk 201
                      gW  fdvt+ +  Wl+
       KOO23138.1 104 GWNRFDVTSSVAAWLA 119
                      8*************97 PP

  == domain 2  score: 14.4 bits;  conditional E-value: 1.4e-06
  TGFb_propeptide 181 naseegWlsfdvtaalnrWlknpeen 206
                       a+++gW ++dvta ++ W++  ++n
       KOO23138.1 257 LANRTGWFEIDVTASVQSWVNGVGNN 282
                      5799****************998877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (316 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       316  (0.0176251); expected 358.6 (0.02)
Passed bias filter:                      239  (0.0133304); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.23s 00:00:00.65 Elapsed: 00:00:00.38
# Mc/sec: 2492.57
//
Query:       KOO23139.1  [L=348]
Description: hypothetical protein Ctob_001292 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
  ------ inclusion threshold ------
       0.15   12.6   8.1        5.1    7.6   0.3    3.9  4  NPV_P10          Nucleopolyhedrovirus P10 protein
        0.6   10.4  18.8       0.27   11.5  13.0    2.4  3  zf-C4H2          Zinc finger-containing protein
       0.72   10.3  34.4       0.52   10.7   7.2    2.6  2  Fez1             Fez1
        1.1    7.7  39.4        1.5    7.3  39.4    1.3  1  FUSC             Fusaric acid resistance protein family
        4.1    7.5  15.5          2    8.5   5.5    3.1  3  DUF1664          Protein of unknown function (DUF1664)
        9.1    4.9  10.7         19    3.8  10.7    1.5  1  MCLC             Mid-1-related chloride channel (MCLC)


Domain annotation for each model (and alignments):
>> NPV_P10  Nucleopolyhedrovirus P10 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.6   0.4    0.0075        22      20      63 ..      21      62 ..      12      66 .. 0.83
   2 ?    7.6   0.3    0.0017       5.1       6      39 ..      67     100 ..      63     118 .. 0.83
   3 ?   -1.3   0.0       1.1   3.2e+03      46      59 ..     197     210 ..     182     222 .. 0.58
   4 ?    1.1   0.0      0.19   5.8e+02      16      31 ..     233     248 ..     231     257 .. 0.82

  Alignments for each domain:
  == domain 1  score: 5.6 bits;  conditional E-value: 0.0075
     NPV_P10 20 VdalqqqvddvqenlpdvtelnekLdaqsaqLaeletkvenIqd 63
                +   q+++++v+++l +   l +k+da ++ +++l +++++  d
  KOO23139.1 21 LAKEQDELASVRAQLGQ--ALASKMDAEAQLMQKLRAALKAKAD 62
                556699999******99..9***************998876555 PP

  == domain 2  score: 7.6 bits;  conditional E-value: 0.0017
     NPV_P10   6 LlvIradikavddkVdalqqqvddvqenlpdvte 39 
                 L++I ++ +av +k+ a  ++v+++++ +++v +
  KOO23139.1  67 LMQIAEASEAVAQKMVAAAERVQELETAFKEVAK 100
                 89*************************9999874 PP

  == domain 3  score: -1.3 bits;  conditional E-value: 1.1
     NPV_P10  46 aqsaqLaeletkve 59 
                 a+ + L++le++v+
  KOO23139.1 197 ALRERLTSLEAEVT 210
                 33333444443333 PP

  == domain 4  score: 1.1 bits;  conditional E-value: 0.19
     NPV_P10  16 vddkVdalqqqvddvq 31 
                 + d+V+al+++vd+ +
  KOO23139.1 233 LRDRVTALEAEVDQER 248
                 5689********9855 PP

>> zf-C4H2  Zinc finger-containing protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.7   2.3     0.023        68      73     128 ..       5      58 ..       2      84 .. 0.73
   2 ?   11.5  13.0   9.1e-05      0.27       8     131 ..      42     185 ..      37     229 .. 0.66
   3 ?   -0.5   0.3      0.43   1.3e+03      61     100 ..     209     248 ..     170     268 .. 0.53

  Alignments for each domain:
  == domain 1  score: 3.7 bits;  conditional E-value: 0.023
     zf-C4H2  73 eekekslekakklyeeykklkeevnelrselglekledleeeeeellkeeifekqk 128
                 ee+  ++e ak+l +e++k ++e+ ++r +lg   l ++ + e +l+++ + +  k
  KOO23139.1   5 EERGSAKELAKELAKELAKEQDELASVRAQLGQA-LASKMDAEAQLMQKLRAAL-K 58 
                 678889999***********************98.8998999999888766332.2 PP

  == domain 2  score: 11.5 bits;  conditional E-value: 9.1e-05
     zf-C4H2   8 ktleleklknklakevealekeekcleeykkelelLeq......EkmaHvee.LrlIhaDinalEsvikeaeeekekslekakklyeeykklkeevnel 99 
                 k+++  +l +kl+++++a  +    l ++ +  e + q      E+ + +e   + + +D+ a+ + +  ae+e ++s ++a +l++e ++l+e+v  l
  KOO23139.1  42 KMDAEAQLMQKLRAALKAKADMAAQLMQIAEASEAVAQkmvaaaERVQELETaFKEVAKDKAAMQERLAAAEQEASESSAQAAQLVSETAPLRERVGAL 140
                 5555566666777777766666666666666666665511112266666663367899***************************************** PP

     zf-C4H2 100 rselglekledleeeeeellkeeifekqklk..............a 131
                 ++      l + +   + +  e  +e  k++              +
  KOO23139.1 141 QEAAAQAALAEHKAATS-AAAEAAVEAAKQDfiansataieaaalK 185
                 ***99999999555555.5555555665554444444444444441 PP

  == domain 3  score: -0.5 bits;  conditional E-value: 0.43
     zf-C4H2  61 inalEsvikeaeeekekslekakklyeeykklkeevnelr 100
                 + a    +  ae   + ++++ + l + +++l  ev++ r
  KOO23139.1 209 VTARSAAMATAEATAHAEKRERELLRDRVTALEAEVDQER 248
                 2222233333333333333333333333333333333333 PP

>> Fez1  Fez1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.4  20.3     0.032        94      20     145 ..      15     145 ..       9     171 .. 0.63
   2 ?   10.7   7.2   0.00018      0.52      31     110 ..     179     258 ..     168     274 .. 0.86

  Alignments for each domain:
  == domain 1  score: 3.4 bits;  conditional E-value: 0.032
        Fez1  20 kdsqaevtqklseivalkaqlre.lrakleekeeeikeleesleektlelevcenelqrk...kseaellrekvekleeelkelreelselsleeeeaa 114
                 k+  +e+++  +e+ +++aql + l +k++++ + +++l+++l+ k++   ++ +  + +    ++     e+v++le+ +ke+ ++ ++++++ + a+
  KOO23139.1  15 KELAKELAKEQDELASVRAQLGQaLASKMDAEAQLMQKLRAALKAKADMAAQLMQIAEASeavAQKMVAAAERVQELETAFKEVAKDKAAMQERLAAAE 113
                 89999***************976257789999999999**99999988755554433333222445555667777777777777555555444444444 PP

        Fez1 115 lesdeakaqrqe.aeeleelkreverlraeLk 145
                 +e++e+ aq ++  +e++ l+++v  l+++ +
  KOO23139.1 114 QEASESSAQAAQlVSETAPLRERVGALQEAAA 145
                 44444444443334556666666666655333 PP

  == domain 2  score: 10.7 bits;  conditional E-value: 0.00018
        Fez1  31 seivalkaqlrelrakleekeeeikeleesleektlelevcenelqrkkseaellrekvekleeelkelreelselslee 110
                  e  alk +l+ +  + ++  e++++le++++ +++ + + e+  + +k e ellr++v++le+e+ + r++ ++l++ee
  KOO23139.1 179 IEAAALKRKLQVADDRERALRERLTSLEAEVTARSAAMATAEATAHAEKRERELLRDRVTALEAEVDQERTRGRSLAEEE 258
                 57788999999999999999999********************************************9999777765544 PP

>> FUSC  Fusaric acid resistance protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.3  39.4   0.00049       1.5     147     347 ..      38     240 ..      15     265 .. 0.82

  Alignments for each domain:
  == domain 1  score: 7.3 bits;  conditional E-value: 0.00049
        FUSC 147 alvfPrsvapalrarlrallrdalalaaaalageegaeareaararlaadilalealrsqaayesprirararalrrllsr.mlallallsslarllar 244
                 al +   ++++l+++lra+l++ +  aa++++ +e++ea+ +++ + a+++ +le++++ +a +++ +++r +a+ +  s+  + + +l+s++a l +r
  KOO23139.1  38 ALASKMDAEAQLMQKLRAALKAKADMAAQLMQIAEASEAVAQKMVAAAERVQELETAFKEVAKDKAAMQERLAAAEQEASEsSAQAAQLVSETAPLRER 136
                 666778899***************************************************************999765554156677788888888888 PP

        FUSC 245 lraeeaaavpe.laallaelaaleaaaaaealeaalaalrarl..ralrraleadadtaalllarlaellaelaqllaslraleaaiaaarraerlarh 340
                 + a ++aa+++ la+  a++ a+++aa ++a ++ +a   +++  +al+r l+ + d++++l +rl +l ae+++  a++++ ea +   ++++  +  
  KOO23139.1 137 VGALQEAAAQAaLAEHKAATSAAAEAAVEAAKQDFIANSATAIeaAALKRKLQVADDRERALRERLTSLEAEVTARSAAMATAEATAH--AEKRERELL 233
                 8888888855556666666666677777777777777777766446667777799999999999999999999998888877777755..555556777 PP

        FUSC 341 rdhlaal 347
                 rd+++al
  KOO23139.1 234 RDRVTAL 240
                 7777776 PP

>> DUF1664  Protein of unknown function (DUF1664)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.5   5.5   0.00066         2      42     118 ..      13      96 ..       7     100 .. 0.64
   2 ?    7.6   1.1    0.0012       3.7      43     102 ..      85     143 ..      79     151 .. 0.84
   3 ?    0.6   0.2      0.18   5.3e+02      62     107 ..     196     241 ..     163     257 .. 0.57

  Alignments for each domain:
  == domain 1  score: 8.5 bits;  conditional E-value: 0.00066
     DUF1664  42 avesvskqleqvseslaatkrhLssrid.rvdkkldeqk......eiskeikeevtevredlseigedvesvkeavegleskle 118
                   ++++k+l + +++la+++ +L + ++ ++d++ + ++      +++++++++++++ e  +++ +++ +  e v++le+  +
  KOO23139.1  13 LAKELAKELAKEQDELASVRAQLGQALAsKMDAEAQLMQklraalKAKADMAAQLMQIAEASEAVAQKMVAAAERVQELETAFK 96 
                 567889999999999999999999988534665555554000000555556666666666666666666666666666666655 PP

  == domain 2  score: 7.6 bits;  conditional E-value: 0.0012
     DUF1664  43 vesvskqleqvseslaatkrhLssridrvdkkldeqkeiskeikeevtevredlseiged 102
                  e+v ++le+  +++a+ k  +++r++  +++  e+++ ++++ +e + +re + +++e 
  KOO23139.1  85 AERV-QELETAFKEVAKDKAAMQERLAAAEQEASESSAQAAQLVSETAPLRERVGALQEA 143
                 4444.68999*****************************999999999999998887765 PP

  == domain 3  score: 0.6 bits;  conditional E-value: 0.18
     DUF1664  62 rhLssridrvdkkldeqkeiskeikeevtevredlseigedvesvk 107
                 r L +r+ ++++++ + +++ +  ++  ++ +++ + +++ v++++
  KOO23139.1 196 RALRERLTSLEAEVTARSAAMATAEATAHAEKRERELLRDRVTALE 241
                 4444555555554444444444444444444444444444444444 PP

>> MCLC  Mid-1-related chloride channel (MCLC)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.8  10.7    0.0063        19     448     544 ..      74     172 ..      37     177 .. 0.73

  Alignments for each domain:
  == domain 1  score: 3.8 bits;  conditional E-value: 0.0063
        MCLC 448 aearehpevvpsekssvlntslketaellgestkkesstessqsakavsgqdaagtaegspiaekaqlkldseg....speegstespasavaaargtd 542
                 +ea  +  v+++e+++ l+t  ke+a+   ++  +e  + + q a ++s q a+ ++e+ p+ e++    ++++    + ++++t+++a+a  +a+ +d
  KOO23139.1  74 SEAVAQKMVAAAERVQELETAFKEVAKD--KAAMQERLAAAEQEASESSAQAAQLVSETAPLRERVGALQEAAAqaalAEHKAATSAAAEAAVEAAKQD 170
                 46666778999*************9974..4555678888889999*****************998655544441111456677777777777777777 PP

        MCLC 543 pv 544
                  +
  KOO23139.1 171 FI 172
                 65 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (348 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2630  (0.14669); expected 358.6 (0.02)
Passed bias filter:                      620  (0.0345808); expected 358.6 (0.02)
Passed Vit filter:                       139  (0.0077528); expected 17.9 (0.001)
Passed Fwd filter:                        64  (0.00356964); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 1.24u 0.33s 00:00:01.57 Elapsed: 00:00:00.52
# Mc/sec: 1999.39
//
Query:       KOO23140.1  [L=2528]
Description: ADP-ribose mitochondrial precursor [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    5.8e-43  147.2   0.0    1.5e-42  145.9   0.0    1.6  2  LSDAT_euk     SLOG in TRPM
    1.2e-23   83.4   0.0    2.7e-23   82.3   0.0    1.6  1  LSDAT_prok    SLOG in TRPM, prokaryote
    4.3e-14   52.7   0.3    2.5e-09   37.3   0.0    2.9  2  NUDIX         NUDIX domain
    5.1e-05   22.6   0.2    5.1e-05   22.6   0.2    2.1  2  Ion_trans     Ion transport protein
  ------ inclusion threshold ------
      0.011   15.1   2.2       0.03   13.7   0.1    2.4  2  Dynamitin     Dynamitin
       0.16   11.5   0.1        8.5    5.9   0.0    2.9  3  LDcluster4    SLOG cluster4 family
        1.3    9.3   5.7          5    7.4   0.0    3.2  2  ABC_tran_CTD  ABC transporter C-terminal domain


Domain annotation for each model (and alignments):
>> LSDAT_euk  SLOG in TRPM
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  145.9   0.0   5.7e-46   1.5e-42       1     234 [.     166     406 ..     166     432 .. 0.84
   2 ?   -3.2   0.0       1.6   4.2e+03      53      88 ..    1062    1098 ..    1051    1115 .. 0.67

  Alignments for each domain:
  == domain 1  score: 145.9 bits;  conditional E-value: 5.7e-46
   LSDAT_euk   1 akYvrlsvdtkpedilkllekewklelPkLvisvhGGaknFelqpklkkvlrkGLlkaaktTgAWiiTgGvntGvvrhvgdalkelssk......skrk 93 
                 a++  +s+ t+++ i+kll + w+++ P+ +++v G a+  +l+p+l+++lr+G+  aa++T AW+iTgG++tGv+  vg+al++ +++      ++  
  KOO23140.1 166 ARFAGVSTRTDADAIVKLLLSYWRIQVPSVLLTVSGSAQAMDLEPRLENMLRDGIDSAASSTRAWVITGGMDTGVMELVGRALRSRTTTnvraegHAWA 264
                 678889******************************************************************************996532444345667 PP

   LSDAT_euk  94 vvtiGiapwGivenkedligkdv.......vveyqtlsnpksklavlnsnHshFllvDd.Gtv.gkygaeiklRrklEkaiskqkiatrtkqgvpvvcv 183
                 +++iGiap G v+n+e+l + +          +y +  +++s  ++l+ nHshF+lvDd G++   +gaei+lR ++E+ +        +k  vp v +
  KOO23140.1 265 TPLIGIAPLGCVTNQESLRQAKPeerlpppLLPYIKRIKNSSASSALDMNHSHFILVDDpGARaPAWGAEIELRGQVERRLV-------EKLMVPSVLL 356
                 889***************965431111222356777778999999*************955541589************999.......56789***** PP

   LSDAT_euk 184 vveGGpntiktvleyvrespkvPvvvv.dgsGraaDllafahklleeegklk 234
                 v++GG  t +t+l + ++  ++P v+v +  G a  l  fa k  e+ +++ 
  KOO23140.1 357 VIQGGRGTFNTILTTWSN--HTPCVLVrESRGCARALADFALKVQEHPEREP 406
                 **************9999..77766551566777777779988887766654 PP

  == domain 2  score: -3.2 bits;  conditional E-value: 1.6
   LSDAT_euk   53 kGLlkaaktT.gAWiiTgGvntGvvrhvgdalkelss 88  
                  +G +   + T  AWi T+ v+  ++r++++ ++ +s 
  KOO23140.1 1062 RGYVDDPRNTdHAWIETTAVHFHMSRELSSKIRLQSY 1098
                  555555555516*********9999999988776533 PP

>> LSDAT_prok  SLOG in TRPM, prokaryote
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   82.3   0.0     1e-26   2.7e-23       3     168 ..     196     397 ..     194     433 .. 0.83

  Alignments for each domain:
  == domain 1  score: 82.3 bits;  conditional E-value: 1e-26
  LSDAT_prok   3 vlvlvGgasgldeeeaarlrkllravlaplaealgavvidgGtdtGvmkllgra...raaveatfp.......LiGVApegtValpdepak........ 83 
                 +l++ G+a+ +d e   rl+++lr+++  +a+++ a vi+gG dtGvm+l+gra   r++++ +         LiG+Ap g V+  ++ ++        
  KOO23140.1 196 LLTVSGSAQAMDLEP--RLENMLRDGIDSAASSTRAWVITGGMDTGVMELVGRAlrsRTTTNVRAEghawatpLIGIAPLGCVTNQESLRQakpeerlp 292
                 58899*******999..***********************************983223333333223344455**********9887333346899*** PP

  LSDAT_prok  84 ............tkdeaeLephHthfvLvpg.....erWGdEspwlarlatalaekk..psvtvlvnGgeitlkdiresvkagrpilvvaGsgrladei 163
                             ++ + +L+ +H+hf+Lv+        WG E ++  ++  +l ek   psv +++ Gg  t++ i    +++ p ++v+ s ++a ++
  KOO23140.1 293 ppllpyikriknSSASSALDMNHSHFILVDDpgaraPAWGAEIELRGQVERRLVEKLmvPSVLLVIQGGRGTFNTILTTWSNHTPCVLVRESRGCARAL 391
                 **********9666999************766699899****************88888***************************************9 PP

  LSDAT_prok 164 aaal.r 168
                 a+ + +
  KOO23140.1 392 ADFAlK 397
                 776531 PP

>> NUDIX  NUDIX domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.3   0.0   9.6e-13   2.5e-09      14      63 ..     666     720 ..     655     804 .. 0.66
   2 !   12.3   0.0   5.1e-05      0.13      13      52 ..     980    1018 ..     970    1059 .. 0.84

  Alignments for each domain:
  == domain 1  score: 37.3 bits;  conditional E-value: 9.6e-13
                 TSEEEEEEESSSSTTT.EESSEEECBTTSHHHHHHHHHHHHHHS.EEEEEE.....E CS
       NUDIX  14 kgevLlvrrskkpfpg.WelPgGkvepgEtpeeAArREleEEtG.leaell.....e 63 
                 + +++ ++r+  + pg W+lPgG+v++gEt+ e+++RE++ E+G ++ ++      e
  KOO23140.1 666 QLQMVAIERA--DQPGvWALPGGMVDEGETVSETVQREFRAEVGnIPDPEGqrlfeE 720
                 4459999999..77788***************************7755555333331 PP

  == domain 2  score: 12.3 bits;  conditional E-value: 5.1e-05
                  TTSEEEEEEESSSSTTTEESSEEECBTTSHHHHHHHHHHH CS
       NUDIX   13 ekgevLlvrrskkpfpgWelPgGkvepgEtpeeAArREle 52  
                  ++ +v++v+r+ +  ++W+lPg  +++gEt+++A+r  +e
  KOO23140.1  980 NQLQVVVVKRT-DGSDEWSLPGRLIREGETLAQALRQAFE 1018
                  4446*******.77777**************999886555 PP

>> Ion_trans  Ion transport protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   1.6      0.25   6.4e+02     104     151 ..    1706    1751 ..    1686    1799 .. 0.76
   2 !   22.6   0.2     2e-08   5.1e-05      93     241 ..    1864    2006 ..    1818    2010 .. 0.79

  Alignments for each domain:
  == domain 1  score: -0.6 bits;  conditional E-value: 0.25
                  GGGGHHHCHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH.HHH CS
   Ion_trans  104 lrllklisrleglrtlvtalirsvkdllnvlllllvvlfifalig.vql 151 
                   r+l ++s+      +   +  s+  l++ l+ +++vlfi+ ++  +ql
  KOO23140.1 1706 KRVLDMVSHYAFTGLF---VWVSFLPLCQPLYTAHLVLFIWVVAKaYQL 1751
                  4566666666655554...448999999999999999999999865655 PP

  == domain 2  score: 22.6 bits;  conditional E-value: 2e-08
                  HHHHHHHHHGGGGGGHHHCHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCCCCSCCSTSSSTTTSSSSSS.........HH CS
   Ion_trans   93 lllsvlrlfrvlrllklisrleglrtlvtalirsvkdllnvlllllvvlfifaligvqlfkgklreknecaktwenpnngntnFdn.........ff 180 
                  l++++l +f  + l  ++s +e+l +l+ a  r++ dl   l l++v+++ f+++ + l     ++   +++ +++p ++ +n  +         ff
  KOO23140.1 1864 LAIAALPIF--FSLTEIFSVSETLGALIIAASRMAYDLRFWLPLVIVIGSGFGVALNLLL---PHY---QSEHGAGPLHPWFN--QeldvsaagpFF 1950
                  444555555..677888899999999999***************************8888...222...22334444444444..334556666699 PP

                  HHHHHHHHHHTTSSHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
   Ion_trans  181 tallwlfrlmttegwgdilyatldekskvaliyfvifiilgsflllNlliaviadnfqelt 241 
                    ++++f      +++    a   ++  va +++ ++++l+ +l++Nllia+ +  ++e+ 
  KOO23140.1 1951 APFWATFG-----YFNPAEIAGSPGSALVAPFFLWLYCLLVLILFVNLLIAMFNARYSEVV 2006
                  99999998.....777766677777789999**************************9986 PP

>> Dynamitin  Dynamitin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.1   1.2e-05      0.03     208     261 ..    2300    2350 ..    2298    2354 .. 0.90
   2 ?    0.1   0.2      0.15   3.9e+02     131     179 ..    2370    2416 ..    2356    2446 .. 0.60

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 1.2e-05
   Dynamitin  208 akiaelekRLaeLEklvGlssesldelsanlkprplletlsrLeaklslL.qtah 261 
                  a+++ele+R+ +LE++ G+ +++l e+s     + +++ l+rL+a +++L +++h
  KOO23140.1 2300 AELSELEERVGALESTMGAVQATLHEISL----HEICSELKRLSALITALnSPTH 2350
                  5789*********************9965....58***************77765 PP

  == domain 2  score: 0.1 bits;  conditional E-value: 0.15
   Dynamitin  131 laeqleslqkqLeeleellgedsaa.sltdaqealakrllsqleefkesk 179 
                  + +ql+ l++qL++l   l  ++a+  ++ a+ a+a+   +ql+ ++ ++
  KOO23140.1 2370 MERQLDGLREQLDSL---LAVQRATrVMSAAERAEAEHFERQLAILRLEQ 2416
                  6699***********...33333332333344444444444544444332 PP

>> LDcluster4  SLOG cluster4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.9   0.0    0.0033       8.5       5      56 ..     198     252 ..     194     256 .. 0.70
   2 ?    1.8   0.0     0.064   1.6e+02      99     130 ..     354     385 ..     342     409 .. 0.80
   3 ?   -1.6   0.0      0.72   1.8e+03      36      63 ..    1336    1363 ..    1332    1389 .. 0.87

  Alignments for each domain:
  == domain 1  score: 5.9 bits;  conditional E-value: 0.0033
  LDcluster4   5 gVmGsaete.akeeale.laeelGrliAkegavlltGgrt.GvmeaaskGakeag 56 
                 +V+Gsa+    +++ ++ l   +  +  + +a ++tGg++ Gvme + ++ +++ 
  KOO23140.1 198 TVSGSAQAMdLEPRLENmLRDGIDSAASSTRAWVITGGMDtGVMELVGRALRSRT 252
                 577766655555544443444455666778999******77*******9988775 PP

  == domain 2  score: 1.8 bits;  conditional E-value: 0.064
  LDcluster4  99 vviaiggrsGTlsEialaleegkpvivlkgtd 130
                 v+++i+g+ GT + i ++++++ p+++++++ 
  KOO23140.1 354 VLLVIQGGRGTFNTILTTWSNHTPCVLVRESR 385
                 68899**********************99763 PP

  == domain 3  score: -1.6 bits;  conditional E-value: 0.72
  LDcluster4   36 lltGgrtGvmeaaskGakeagGltvGil 63  
                  ll  +++ +m+a+s+ ++ +gG  +G+ 
  KOO23140.1 1336 LLQAACNDFMRASSNMVSGKGGHALGVA 1363
                  77889999******************96 PP

>> ABC_tran_CTD  ABC transporter C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.4   0.0     0.002         5       9      54 ..    2301    2346 ..    2299    2353 .. 0.79
   2 ?    0.9   2.8      0.22   5.6e+02       2      30 ..    2394    2424 ..    2393    2440 .. 0.87

  Alignments for each domain:
  == domain 1  score: 7.4 bits;  conditional E-value: 0.002
  ABC_tran_CTD    9 eleeleaeIeaLEeeiaeleaeladpelysdpeklaelsaeleele 54  
                    el ele++  aLE  + +++a l + +l +   +l++lsa +++l+
    KOO23140.1 2301 ELSELEERVGALESTMGAVQATLHEISLHEICSELKRLSALITALN 2346
                    8999999999999999999999998886544477777777766665 PP

  == domain 2  score: 0.9 bits;  conditional E-value: 0.22
  ABC_tran_CTD    2 lsykeqreleeleae..IeaLEeeiaeleae 30  
                    +s  e+ e e+ e++  I +LE+e+a++ ++
    KOO23140.1 2394 MSAAERAEAEHFERQlaILRLEQEQAAVRQQ 2424
                    6788999***999997789********9887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (2528 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       740  (0.0412739); expected 358.6 (0.02)
Passed bias filter:                      463  (0.0258241); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 1.18u 0.33s 00:00:01.51 Elapsed: 00:00:00.86
# Mc/sec: 8915.89
//
Query:       KOO23141.1  [L=1178]
Description: aaa family, partial [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.2e-25   88.7   0.0      3e-12   47.1   0.0    4.7  4  AAA              ATPase family associated with various cellul
    2.4e-14   53.3   6.5      1e-06   28.8   0.5    4.1  3  AAA_lid_6        AAA lid domain
    2.3e-12   47.3   0.0     0.0031   17.8   0.0    5.9  4  AAA_22           AAA domain
    2.6e-05   24.2   0.3        0.3   11.1   0.1    3.4  2  AAA_5            AAA domain (dynein-related subfamily)
    7.1e-05   22.3   0.2       0.24   10.8   0.0    2.7  2  Mg_chelatase     Magnesium chelatase, subunit ChlI
    0.00021   21.4   0.0       0.44   10.6   0.0    2.5  2  Torsin           Torsin
    0.00025   20.8   0.2       0.32   10.7   0.1    3.1  2  Sigma54_activat  Sigma-54 interaction domain
    0.00038   20.2   7.0      0.052   13.3   0.2    4.7  5  AAA_30           AAA domain
     0.0006   20.1   4.8        2.8    8.1   0.1    4.5  4  AAA_28           AAA domain
     0.0016   18.6   0.1        0.3   11.2   0.0    3.0  2  AAA_33           AAA domain
     0.0019   17.5   0.2       0.12   11.7   0.0    2.9  3  Zeta_toxin       Zeta toxin
     0.0035   17.7   0.1        2.4    8.5   0.0    3.4  3  AAA_19           AAA domain
     0.0037   16.9   0.0        2.2    7.9   0.0    3.8  4  Zot              Zonular occludens toxin (Zot)
  ------ inclusion threshold ------
      0.015   15.7   0.0        9.3    6.7   0.0    2.8  2  RNA_helicase     RNA helicase
      0.029   14.1   0.1        4.8    6.9   0.0    2.5  2  AAA_24           AAA domain
      0.035   13.3   1.1         16    4.6   0.0    3.7  4  DUF2075          Uncharacterized conserved protein (DUF2075)
      0.038   14.5   0.0        2.9    8.4   0.0    3.1  2  AAA_18           AAA domain
      0.044   14.0   1.2       0.18   12.1   1.2    2.1  1  P5CR_dimer       Pyrroline-5-carboxylate reductase dimerisati
       0.14   12.1   0.4         11    5.9   0.0    3.3  3  NACHT            NACHT domain
       0.14   11.8   2.0         21    4.8   0.0    3.5  3  IstB_IS21        IstB-like ATP binding protein
       0.14   12.5  12.4       0.29   11.5   0.3    4.8  3  AAA_16           AAA ATPase domain
       0.15   11.3   0.1       0.29   10.3   0.1    1.4  1  PsiA             PsiA protein
       0.24   10.9   0.1         24    4.4   0.0    2.4  2  AAA_7            P-loop containing dynein motor region


Domain annotation for each model (and alignments):
>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.8   0.0   0.00032      0.25       1      37 [.      69     112 ..      69     132 .. 0.72
   2 !   10.2   0.0     0.001      0.79      58     120 ..     217     271 ..     186     285 .. 0.82
   3 !   13.6   0.0   8.5e-05     0.066      26     115 ..     504     598 ..     435     613 .. 0.73
   4 !   47.1   0.0   3.8e-15     3e-12       3     130 ..     757     888 ..     755     890 .. 0.81

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 0.00032
                 EEEESSTTSSHHHHHHHHHHHHT.......HEEEEEETTTCSSS CS
         AAA   1 vllyGppGtGKTllakavakelg.......vefleisgsellsk 37 
                 ++l+G+pGtGK+l a   a+ lg        +++++ g++l + 
  KOO23141.1  69 MVLTGNPGTGKSLYAALYAELLGelqllpqGRVVRVTGAQLQDG 112
                 789************99999984444444477999999888843 PP

  == domain 2  score: 10.2 bits;  conditional E-value: 0.001
                 TSEEEEEETGGGHHHHHTTCCCHHHHHHHHHHHHHHHHTTTSSSTEEEEEEESSGGGSTHHHH CS
         AAA  58 kpsilfiDEidalaksrsgseseeeervvnqLlteldgvkkkeskvivigatnrpdkldpall 120
                 +  +l++D++++l +s+     + ++rv+ qL +e+d+      ++ +++a+++  ++++ l 
  KOO23141.1 217 TGGVLLVDDAHQLEPSD-----KGAKRVLYQLTEEMDKRGG---RLALVLAGYEKPMFEELLP 271
                 359**********9999.....88999**********9999...6889999999888888776 PP

  == domain 3  score: 13.6 bits;  conditional E-value: 8.5e-05
                 EEEEETTTCSSSSTTHHHHHHHHHHHHHHHTSTSEEEEEETGGGHHHHH.........TTCCCHHHHHHHHHHHHHHHHTTTSSSTEEEEEEESSGGGS CS
         AAA  26 fleisgsellskyvgesekkirelfkeakekakpsilfiDEidalaksr.........sgseseeeervvnqLlteldgvkkkeskvivigatnrpdkl 115
                 ++    ++l+ + +g+se+k+++l+++a      ++l+iDE++ l + +           s + +++ v+n+L++ ++g    ++ v+++g  n+++++
  KOO23141.1 504 VVLATPADLIGSALGQSEEKTNALLDKA--LG--CVLVIDEAYGLDPLSsfggpggggGASGDPFKTAVINTLVSRVQGDAGADRCVLLLGYRNEMESM 598
                 5555556677779************986..44..***********99989999999876678999*****************99999999998887654 PP

  == domain 4  score: 47.1 bits;  conditional E-value: 3.8e-15
                 EESSTTSSHHHHHHHHHHHH.......THEEEEEETTTCSSSSTTHHHHHHHHHHHHHHHTSTSEEEEEETGGGHHHHHTTCCCHHHHHHHHHHHHHHH CS
         AAA   3 lyGppGtGKTllakavakel.......gvefleisgsellskyvgesekkirelfkeakekakpsilfiDEidalaksrsgseseeeervvnqLlteld 94 
                 + G pGtGKT++a+ +   +       +++++++s+s+l+  +vg++ +k+re+f++a+      +lfiDE+++l        ++  ++++++++t l 
  KOO23141.1 757 FQGSPGTGKTTVARRMGMLFealgvlpSADVVQVSASQLTTGFVGQTGAKTREIFESARG----AVLFIDEAYRLYDPL---GRSYMQEAIDEIVTLLT 848
                 68************9877753345555599*************************99853....6**********9888...77889999999999999 PP

                 HTTTSSSTEEEEEEESS...GGGSTHHHH.S.TTSSEEEET CS
         AAA  95 gvkkkeskvivigatnr...pdkldpall.r.gRfdrkiei 130
                 ++  k +k++vi a+++    ++ld+    + +R+  +i +
  KOO23141.1 849 EEAYK-GKMVVIFAGYQgqmSEMLDKVNPgLkSRVADVIDF 888
                 99885.779*****999887445554444334888777766 PP

>> AAA_lid_6  AAA lid domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   1.4   2.6e-05      0.02       9      62 .]     323     375 ..     315     375 .. 0.83
   2 !   28.8   0.5   1.3e-09     1e-06       1      57 [.     644     698 ..     644     703 .. 0.84
   3 !    9.0   0.0     0.002       1.5      18      57 ..     931     970 ..     918     973 .. 0.83

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 2.6e-05
   AAA_lid_6   9 ellerrrrdenfGNARfVRnllekairrqadRlattddseltredlmtLtaeDi 62 
                  +l + r +  f NAR ++ l+e + +rq  R+ + +++   + d+ +++++D+
  KOO23141.1 323 RRLGKGRGNVGFANARAIESLVELTAERQTARVLA-ERRAGAQPDIFRIERADL 375
                 44555666778************************.588888889999999996 PP

  == domain 2  score: 28.8 bits;  conditional E-value: 1.3e-09
   AAA_lid_6   1 eeAeevlrellerrrrdenfGNARfVRnllekairrqadRlattddseltredlmtL 57 
                 e A+ v++++l r+r ++nfGNA+ V+n +  a+ r + Rl +   +  tr+  + L
  KOO23141.1 644 ETARLVVQQDLARARLRPNFGNAGAVDNSVSSAVLRAEARLEA--LPAETRASQTEL 698
                 56999**************************************..555555544444 PP

  == domain 3  score: 9.0 bits;  conditional E-value: 0.002
   AAA_lid_6  18 enfGNARfVRnllekairrqadRlattddseltredlmtL 57 
                 ++  N+R+V++++ +   + a+R +tt  +e+ ++ l tL
  KOO23141.1 931 PSWANGRDVETFVKRVTVECATRGTTTVTTEALDAALVTL 970
                 7899**********************86666666777776 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.8   0.0   3.9e-06    0.0031       6      75 ..      67     142 ..      62     163 .. 0.75
   2 ?    4.0   0.0      0.07        55      87     129 ..     212     260 ..     203     264 .. 0.71
   3 ?    5.4   0.0     0.027        21      42     103 ..     434     544 ..     407     599 .. 0.66
   4 !   10.2   0.0   0.00087      0.68      12      51 ..     759     796 ..     752     871 .. 0.84

  Alignments for each domain:
  == domain 1  score: 17.8 bits;  conditional E-value: 3.9e-06
      AAA_22   6 gilvvtGesGtGKTtllrrlleqldeeakaeeerpevvfvtlpsst.sskdllrellralglelka.......erlss 75 
                  ++v+tG +GtGK++ ++ ++e l e   +  ++ +vv+vt +++  +  + l++l++ ++ ++++        ++++
  KOO23141.1  67 LSMVLTGNPGTGKSLYAALYAELLGE--LQLLPQGRVVRVTGAQLQdGGVEGLEKLFEMFDAPGNGtlqvgdtVEARR 142
                 689*********************54..33348888899998888877777789999999999998665555544444 PP

  == domain 2  score: 4.0 bits;  conditional E-value: 0.07
      AAA_22  87 rarav.ielliiDEaqhlr.s....eealeeLrsllnlsrkgvqliLvG 129
                 rar++  ++l++D+a+ l  s    +++l +L + ++ +   ++l+L+G
  KOO23141.1 212 RARDDtGGVLLVDDAHQLEpSdkgaKRVLYQLTEEMDKRGGRLALVLAG 260
                 45555668**********7735567777777766566466666666666 PP

  == domain 3  score: 5.4 bits;  conditional E-value: 0.027
      AAA_22  42 vvfvtlpsstsskdllrellralglelka..........................................erlsseell.ealeqalrarav...... 91 
                  vfv  p++t+ ++l+ ++lr+lgl  k+                                            ++  +l+ +al q  +++ +      
  KOO23141.1 434 RVFVGNPGKTTVAKLYGQILRELGLLSKGeivlprdcaparlcsreivlprdcalarlcsreialsrdcdvVLATPADLIgSALGQSEEKTNAlldkal 532
                 348888999999999999999999877778888888888888888888888888877777777777777774444444443333333333333444444 PP

      AAA_22  92 ielliiDEaqhl 103
                   +l+iDEa  l
  KOO23141.1 533 GCVLVIDEAYGL 544
                 567888888665 PP

  == domain 4  score: 10.2 bits;  conditional E-value: 0.00087
      AAA_22  12 GesGtGKTtllrrlleqldeeakaee...erpevvfvtlpsst 51 
                 G +GtGKTt++rr+ + +++         ++++vv v ++++t
  KOO23141.1 759 GSPGTGKTTVARRMGMLFEA-----LgvlPSADVVQVSASQLT 796
                 99************999842.....124566666666555555 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.1   0.1   0.00039       0.3       2      24 ..      69      91 ..      68     105 .. 0.88
   2 !    9.5   0.0    0.0012      0.96       4      73 ..     757     823 ..     754     881 .. 0.72

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00039
                EEEE--SSSSHHHHHHHGGGGBS CS
       AAA_5  2 vlLvGppGtgKselaerlaaaln 24
                ++L G+pGtgKs  a  +a++l+
  KOO23141.1 69 MVLTGNPGTGKSLYAALYAELLG 91
                79******************994 PP

  == domain 2  score: 9.5 bits;  conditional E-value: 0.0012
                 EE--SSSSHHHHHHHGGGGB.S--EEEEE--TT--HHHHH--B--.........--------G-SEEEEES CS
       AAA_5   4 LvGppGtgKselaerlaaal.nreveyvqltrdtteedlkgrreikngttslvdsplvraaregeilvlDE 73 
                  +G pGtgK+++a+r+  ++    v+  +   + ++++l+ +     g+t  +  ++ ++  +g++l++DE
  KOO23141.1 757 FQGSPGTGKTTVARRMGMLFeALGVLPSADVVQVSASQLTTGFV---GQTGAKTREIFES-ARGAVLFIDE 823
                 58*************98888644444444444555555555555...3444444444422.3466666666 PP

>> Mg_chelatase  Magnesium chelatase, subunit ChlI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.5   0.1    0.0015       1.2      24      50 ..      68      94 ..      67     114 .. 0.87
   2 !   10.8   0.0    0.0003      0.24      26      60 ..     756     790 ..     752     825 .. 0.76

  Alignments for each domain:
  == domain 1  score: 8.5 bits;  conditional E-value: 0.0015
  Mg_chelatase 24 nlllvGppGsGKtmlakrlpsllppls 50
                  +++l+G+pG+GK++ a+  ++ll +l+
    KOO23141.1 68 SMVLTGNPGTGKSLYAALYAELLGELQ 94
                  589***************999999886 PP

  == domain 2  score: 10.8 bits;  conditional E-value: 0.0003
  Mg_chelatase  26 llvGppGsGKtmlakrlpsllpplseeealevaki 60 
                    + G+pG+GKt +a+r+  l+ +l    + +v ++
    KOO23141.1 756 AFQGSPGTGKTTVARRMGMLFEALGVLPSADVVQV 790
                   578**************999877655444444444 PP

>> Torsin  Torsin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.9   0.0    0.0039       3.1      49      75 ..      62      88 ..      46      93 .. 0.86
   2 !   10.6   0.0   0.00057      0.44      35      72 ..     734     771 ..     726     790 .. 0.90

  Alignments for each domain:
  == domain 1  score: 7.9 bits;  conditional E-value: 0.0039
                S-SS-EEEEEEE-TTSSHHHHHHHHHH CS
      Torsin 49 kpkkpLvlsfhGwtGtGknfvaeiiae 75
                  +kpL + + G +GtGk+  a + ae
  KOO23141.1 62 PKQKPLSMVLTGNPGTGKSLYAALYAE 88
                569****************98887665 PP

  == domain 2  score: 10.6 bits;  conditional E-value: 0.00057
                 HHHHHHHHHHHT-SS-SS-EEEEEEE-TTSSHHHHHHH CS
      Torsin  35 klvvksvkaylenekpkkpLvlsfhGwtGtGknfvaei 72 
                 ++v+++ ka  +n+  + +L+++f G +GtGk  va+ 
  KOO23141.1 734 QVVMQAAKAAGRNPIDDLALTFAFQGSPGTGKTTVARR 771
                 789999*****************************986 PP

>> Sigma54_activat  Sigma-54 interaction domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.3   0.0    0.0088       6.9      19      42 ..      63      86 ..      46     111 .. 0.83
   2 !   10.7   0.1   0.00041      0.32      22     105 ..     747     827 ..     727     872 .. 0.78

  Alignments for each domain:
  == domain 1  score: 6.3 bits;  conditional E-value: 0.0088
                     CTSSS-EEEECSTTSSHHHHHHHH CS
  Sigma54_activat 19 aktdlsvlitGesGtGKellarai 42
                      +++ls+++tG+ GtGK+l a ++
       KOO23141.1 63 KQKPLSMVLTGNPGTGKSLYAALY 86
                     567899*************99875 PP

  == domain 2  score: 10.7 bits;  conditional E-value: 0.00041
                      S.....S-EEEECSTTSSHHHHHHHHHHHSTTTTS-EEEEETTTS-TTCHHHHHHEBSSSSSTTTSS-BEHHHHHTTTSEEEEETGGGS CS
  Sigma54_activat  22 d.....lsvlitGesGtGKellaraiheaskrkekpfvavncaaipeelleseLFGhekGaFtGAekekkGlfekadgGtlfLDeigel 105
                      +     l+   +G  GtGK+++ar +    + + + + + ++ +++++ l++ + G      tGA++++   fe+a g +lf+De  +l
       KOO23141.1 747 PiddlaLTFAFQGSPGTGKTTVARRMGMLFE-ALGVLPSADVVQVSASQLTTGFVGQ-----TGAKTRE--IFESARGAVLFIDEAYRL 827
                      233444778899*************988776.5566888888888888888877775.....8998877..8*************8877 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.3   0.1    0.0094       7.3      20      44 ..      68      92 ..      63     116 .. 0.81
   2 ?   -0.2   0.0      0.88   6.8e+02     112     135 ..     213     236 ..     210     254 .. 0.79
   3 ?   -1.8   0.0       2.7   2.1e+03      65      97 ..     501     541 ..     434     545 .. 0.44
   4 !   13.3   0.2   6.7e-05     0.052      19     101 ..     753     836 ..     739     871 .. 0.64
   5 ?   -2.4   0.1       4.2   3.3e+03      57      82 ..    1080    1110 ..    1042    1127 .. 0.66

  Alignments for each domain:
  == domain 1  score: 6.3 bits;  conditional E-value: 0.0094
      AAA_30 20 vavltGpAGtGKttalkalreawea 44
                 +vltG +GtGK+   + ++e++ +
  KOO23141.1 68 SMVLTGNPGTGKSLYAALYAELLGE 92
                579**********999999988765 PP

  == domain 2  score: -0.2 bits;  conditional E-value: 0.88
      AAA_30 112 aekagakvilvGDerQlasVeaGg 135
                 a+++   v+lv D +Ql++ ++G+
  KOO23141.1 213 ARDDTGGVLLVDDAHQLEPSDKGA 236
                 6777889***********998886 PP

  == domain 3  score: -1.8 bits;  conditional E-value: 2.7
      AAA_30  65 elgi....eastiakllkrlk....grarlepgtllivDEa 97 
                 ++++    +a+ i + l + +    +  + + g +l++DEa
  KOO23141.1 501 DCDVvlatPADLIGSALGQSEektnALLDKALGCVLVIDEA 541
                 33322222555555555555455432223334467777776 PP

  == domain 4  score: 13.3 bits;  conditional E-value: 6.7e-05
      AAA_30  19 rvavltGpAGtGKttalkalreaweaaggrviglAptgka.AkvLaeelgieastiakllkrlkgrarlepgtllivDEagmv........d 101
                 ++ + +G +GtGKtt+ + +  ++ea g  v+  A   ++ A +L+  +g+ ++t ak  +  +     ++g +l +DEa  +         
  KOO23141.1 753 LTFAFQGSPGTGKTTVARRMGMLFEALG--VLPSADVVQVsASQLT--TGFVGQTGAKTREIFE----SARGAVLFIDEAYRLydplgrsyM 836
                 556789*******************999..6665554433144465..6777777777774444....357799999999766555544442 PP

  == domain 5  score: -2.4 bits;  conditional E-value: 4.2
      AAA_30   57 kaAkvLaeelgieastiakllkrlk.....g 82  
                    ++++a+++g++a  + k lkr++     +
  KOO23141.1 1080 DLSARVARQTGMTAGAVGKALKRQAkpmlmA 1110
                  3456677788888888888888877655541 PP

>> AAA_28  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.1   0.0      0.26     2e+02       2      16 ..      69      83 ..      68     108 .. 0.85
   2 ?    5.0   0.1     0.033        26      15      79 ..     630     702 ..     629     709 .. 0.62
   3 !    8.1   0.1    0.0037       2.8       2      19 ..     755     772 ..     754     813 .. 0.89
   4 ?    3.1   0.0      0.13     1e+02     112     151 ..    1006    1054 ..     998    1065 .. 0.78

  Alignments for each domain:
  == domain 1  score: 2.1 bits;  conditional E-value: 0.26
      AAA_28  2 ivitGgestGKTtll 16
                 v+tG ++tGK+  +
  KOO23141.1 69 MVLTGNPGTGKSLYA 83
                59*********9655 PP

  == domain 2  score: 5.0 bits;  conditional E-value: 0.033
      AAA_28  15 lleaLaargypvvpEaareileeklakgedalp.....wvedllafaervleeqleee...aaaaankvlfcD 79 
                 ll++ ++rg ++ pE+ar ++++ la+ +   +     +v++ +  a ++ e++le++   ++a++ ++l++D
  KOO23141.1 630 LLRNVERRGKTIAPETARLVVQQDLARARLRPNfgnagAVDNSVSSAVLRAEARLEALpaeTRASQTELLISD 702
                 78899999*****************888853332222222233333333333333332211555677777777 PP

  == domain 3  score: 8.1 bits;  conditional E-value: 0.0037
      AAA_28   2 ivitGgestGKTtlleaL 19 
                 +++ G ++tGKTt+++++
  KOO23141.1 755 FAFQGSPGTGKTTVARRM 772
                 5789***********987 PP

  == domain 4  score: 3.1 bits;  conditional E-value: 0.13
      AAA_28  112 vfllppap.........eidddgeR.redleereaiderlrealrelgip 151 
                  vf++pp++         ++ +dg   +++++e ++++e+l+ea+++lg++
  KOO23141.1 1006 VFFTPPSFdlqkaireaKM-EDGKDdDDGEKEETDLAEALEEAVKALGYD 1054
                  8888888888887774444.555551579999****************96 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.0   0.1     0.067        52       3      25 ..      70      93 ..      69     117 .. 0.80
   2 !   11.2   0.0   0.00038       0.3       4      24 ..     757     780 ..     755     860 .. 0.78

  Alignments for each domain:
  == domain 1  score: 4.0 bits;  conditional E-value: 0.067
      AAA_33  3 llvGlpGsGKstlaerllkklg.a 25
                +l G pG+GKs +a  +++ lg  
  KOO23141.1 70 VLTGNPGTGKSLYAALYAELLGeL 93
                678**********99988777654 PP

  == domain 2  score: 11.2 bits;  conditional E-value: 0.00038
      AAA_33   4 lvGlpGsGKstlaerl...lkklg 24 
                 + G pG+GK+t+a+r+    ++lg
  KOO23141.1 757 FQGSPGTGKTTVARRMgmlFEALG 780
                 78*************755444444 PP

>> Zeta_toxin  Zeta toxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.7   0.0   0.00015      0.12      11      54 ..      61     109 ..      51     111 .. 0.76
   2 ?    2.1   0.0      0.13        99      23      35 ..     759     771 ..     754     795 .. 0.85
   3 ?   -2.1   0.0       2.4   1.9e+03      73     100 ..     833     860 ..     821     863 .. 0.82

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.00015
  Zeta_toxin  11 psqerPklillgGqpGAGKselaellkdele.....rqgnvvrldpDdl 54 
                  ++++P +++l G pG GKs  a+l ++ l+     +qg+vvr+ + +l
  KOO23141.1  61 DPKQKPLSMVLTGNPGTGKSLYAALYAELLGelqllPQGRVVRVTGAQL 109
                 4679****************77776655444444999999999987665 PP

  == domain 2  score: 2.1 bits;  conditional E-value: 0.13
  Zeta_toxin  23 GqpGAGKselael 35 
                 G+pG GK+++a+ 
  KOO23141.1 759 GSPGTGKTTVARR 771
                 9*********986 PP

  == domain 3  score: -2.1 bits;  conditional E-value: 2.4
  Zeta_toxin  73 seltqkdaselvekllqeaiengyniiv 100
                  +++q+++ e+v+ l++ea++ ++ +i+
  KOO23141.1 833 RSYMQEAIDEIVTLLTEEAYKGKMVVIF 860
                 67999999**************999998 PP

>> AAA_19  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.8   0.0     0.041        32      12      41 ..      68      97 ..      62     108 .. 0.74
   2 ?   -1.6   0.0         4   3.1e+03      94     116 ..     521     546 ..     392     549 .. 0.59
   3 !    8.5   0.0    0.0031       2.4      15      49 ..     757     791 ..     752     832 .. 0.87

  Alignments for each domain:
  == domain 1  score: 4.8 bits;  conditional E-value: 0.041
      AAA_19 12 vllvtaGpGtGKTrvlkhivallvelggvk 41
                 +++t+ pGtGK+       +ll el+ ++
  KOO23141.1 68 SMVLTGNPGTGKSLYAALYAELLGELQLLP 97
                589*********988777777776666555 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 4
      AAA_19  94 aeeekklqeee...llivDEfqdvde 116
                 +e+++ l +++   +l++DE+  +d+
  KOO23141.1 521 EEKTNALLDKAlgcVLVIDEAYGLDP 546
                 22333333332234778888776665 PP

  == domain 3  score: 8.5 bits;  conditional E-value: 0.0031
      AAA_19  15 vtaGpGtGKTrvlkhivallvelggvkpeeillva 49 
                   + pGtGKT+v + +  l+++lg ++ ++++ v+
  KOO23141.1 757 FQGSPGTGKTTVARRMGMLFEALGVLPSADVVQVS 791
                 5699********99998888888888777777665 PP

>> Zot  Zonular occludens toxin (Zot)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.6   0.0      0.24   1.8e+02       5      24 ..      71      91 ..      68     111 .. 0.68
   2 ?    1.2   0.0      0.32   2.5e+02      72      98 ..     209     235 ..     184     270 .. 0.78
   3 ?   -1.0   0.0       1.4   1.1e+03       5      17 ..     757     769 ..     753     775 .. 0.83
   4 !    7.9   0.0    0.0028       2.2      54     107 ..     784     840 ..     766     862 .. 0.65

  Alignments for each domain:
  == domain 1  score: 1.6 bits;  conditional E-value: 0.24
         Zot  5 vtGapGsgKtsga.vkkdllp 24
                 tG+pG+gK+++a +  +ll 
  KOO23141.1 71 LTGNPGTGKSLYAaLYAELLG 91
                69********98614555555 PP

  == domain 2  score: 1.2 bits;  conditional E-value: 0.32
         Zot  72 fakwatidkgallviDEcqeifpvrak 98 
                    +a+ d g++l++D ++++ p  ++
  KOO23141.1 209 KDLRARDDTGGVLLVDDAHQLEPSDKG 235
                 556677679***********9777766 PP

  == domain 3  score: -1.0 bits;  conditional E-value: 1.4
         Zot   5 vtGapGsgKtsga 17 
                 ++G pG+gKt +a
  KOO23141.1 757 FQGSPGTGKTTVA 769
                 78********998 PP

  == domain 4  score: 7.9 bits;  conditional E-value: 0.0028
         Zot  54 tarlirid...npegaetlkefakwatid..kgallviDEcqeifpvrakegrkdpevi 107
                 +a++++++      g+  +  ++++ + +  +ga+l+iDE+ +++    +    ++e i
  KOO23141.1 784 SADVVQVSasqLTTGFVGQTGAKTREIFEsaRGAVLFIDEAYRLYDPLGRS--YMQEAI 840
                 5667777763333344445555555554455**************875553..344444 PP

>> RNA_helicase  RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.7   0.0     0.012       9.3       2      34 ..      70     101 ..      69     112 .. 0.79
   2 ?    5.9   0.0     0.021        17       3      20 ..     757     774 ..     755     818 .. 0.72

  Alignments for each domain:
  == domain 1  score: 6.7 bits;  conditional E-value: 0.012
  RNA_helicase   2 wlyGpsgeGKStlakeLakallkklklkkkdsv 34 
                   +l+G++g+GKS++a    ++ll++l+l  +++v
    KOO23141.1  70 VLTGNPGTGKSLYAAL-YAELLGELQLLPQGRV 101
                   799*********9987.8888888876666655 PP

  == domain 2  score: 5.9 bits;  conditional E-value: 0.021
  RNA_helicase   3 lyGpsgeGKStlakeLak 20 
                   ++G++g+GK+t+a+++  
    KOO23141.1 757 FQGSPGTGKTTVARRMGM 774
                   78***********99544 PP

>> AAA_24  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.6   0.0     0.031        24       2      22 ..      66      86 ..      65      93 .. 0.85
   2 ?    6.9   0.0    0.0061       4.8       6      22 ..     756     772 ..     751     797 .. 0.86

  Alignments for each domain:
  == domain 1  score: 4.6 bits;  conditional E-value: 0.031
      AAA_24  2 klkiliyGpsgiGKTtlakel 22
                +l+++++G +g+GK+  a+ +
  KOO23141.1 66 PLSMVLTGNPGTGKSLYAALY 86
                5789***********988765 PP

  == domain 2  score: 6.9 bits;  conditional E-value: 0.0061
      AAA_24   6 liyGpsgiGKTtlakel 22 
                 +  G++g+GKTt+a+++
  KOO23141.1 756 AFQGSPGTGKTTVARRM 772
                 5679***********99 PP

>> DUF2075  Uncharacterized conserved protein (DUF2075)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.6   0.0      0.02        16       5      19 ..      70      84 ..      67     101 .. 0.84
   2 ?   -1.2   0.0       1.2   9.2e+02      77     104 ..     202     233 ..     187     258 .. 0.70
   3 ?    3.0   0.3     0.064        50       7      19 ..     758     770 ..     754     780 .. 0.86
   4 ?    0.3   0.0      0.41   3.2e+02      86     118 ..     813     842 ..     791     868 .. 0.61

  Alignments for each domain:
  == domain 1  score: 4.6 bits;  conditional E-value: 0.02
     DUF2075  5 lVtGvaGtGKtvvll 19
                + tG++GtGK++ + 
  KOO23141.1 70 VLTGNPGTGKSLYAA 84
                789********9764 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 1.2
     DUF2075  77 f....kkaeekkeepkedvvivDEAhrlltks 104
                 f    +++  ++++++  v++vD Ah l  + 
  KOO23141.1 202 FdigvRRKDLRARDDTGGVLLVDDAHQLEPSD 233
                 355556667778888999********998733 PP

  == domain 3  score: 3.0 bits;  conditional E-value: 0.064
     DUF2075   7 tGvaGtGKtvvll 19 
                 +G +GtGKt v+ 
  KOO23141.1 758 QGSPGTGKTTVAR 770
                 8********9985 PP

  == domain 4  score: 0.3 bits;  conditional E-value: 0.41
     DUF2075  86 epkedvvivDEAhrllt...ksdqaekqseenqlke 118
                 + +  v+ +DEA rl +   +s +      ++ ++e
  KOO23141.1 813 SARGAVLFIDEAYRLYDplgRSYM------QEAIDE 842
                 55667999********94332222......222222 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.4   0.0      0.28   2.2e+02       2      20 ..      70      88 ..      69     111 .. 0.77
   2 ?    8.4   0.0    0.0037       2.9       5      21 ..     759     775 ..     756     873 .. 0.71

  Alignments for each domain:
  == domain 1  score: 2.4 bits;  conditional E-value: 0.28
      AAA_18  2 lltGtpGvGKttlakeLsk 20
                +ltG pG+GK+  a   ++
  KOO23141.1 70 VLTGNPGTGKSLYAALYAE 88
                69********976655555 PP

  == domain 2  score: 8.4 bits;  conditional E-value: 0.0037
      AAA_18   5 GtpGvGKttlakeLskr 21 
                 G pG+GKtt+a++   +
  KOO23141.1 759 GSPGTGKTTVARRMGML 775
                 89**********98544 PP

>> P5CR_dimer  Pyrroline-5-carboxylate reductase dimerisation
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   1.2   0.00023      0.18      21      84 ..    1040    1103 ..    1038    1114 .. 0.84

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 0.00023
                  HHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHHHHCHS.HHHHHHHH--TTSHHHHHHHHHHHTT CS
  P5CR_dimer   21 liealadagvklGlsreeArelaaqtvaGaaklllese.paelrdkvtspgGtTiaglkeleegg 84  
                  l+eal +a  +lG + ++A +     ++Gaa   ++ + p++l ++v+   G+T+ ++ +  +++
  KOO23141.1 1040 LAEALEEAVKALGYDDDDASRAELAELLGAAVEGQA-SfPEDLSARVARQTGMTAGAVGKALKRQ 1103
                  689**************************9987443.36****************9996654444 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.2   0.0      0.19   1.5e+02       3      23 ..      69      89 ..      67     102 .. 0.80
   2 ?   -2.5   0.0       5.4   4.2e+03      47      89 ..     498     540 ..     490     553 .. 0.73
   3 ?    5.9   0.0     0.014        11       3      20 ..     755     772 ..     753     786 .. 0.86

  Alignments for each domain:
  == domain 1  score: 2.2 bits;  conditional E-value: 0.19
                EEEEC-TTTCHHHHHHHHHHH CS
       NACHT  3 vilqGeaGsGKTtLlqklala 23
                ++l+G +G GK+  ++  a++
  KOO23141.1 69 MVLTGNPGTGKSLYAALYAEL 89
                799*********988765555 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 5.4
                 TS-.......-HCHHHCCCCTS--SSS-CCHHHHCCSCCCEEEEEE- CS
       NACHT  47 rsgna....rsladllfsqlpepaapvsevwavllelperlLlilDg 89 
                  s ++     ++adl+ s l +++++ +     ll  +   +l++D 
  KOO23141.1 498 LSRDCdvvlATPADLIGSALGQSEEKTNA----LLDKALGCVLVIDE 540
                 44444446778999999999999999888....99999999999994 PP

  == domain 3  score: 5.9 bits;  conditional E-value: 0.014
                 EEEEC-TTTCHHHHHHHH CS
       NACHT   3 vilqGeaGsGKTtLlqkl 20 
                  + qG +G GKTt ++++
  KOO23141.1 755 FAFQGSPGTGKTTVARRM 772
                 678************987 PP

>> IstB_IS21  IstB-like ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.8   0.0     0.027        21      22      65 ..      41      84 ..      27      91 .. 0.71
   2 ?   -0.8   0.0       1.4   1.1e+03     111     137 ..     220     247 ..     203     263 .. 0.74
   3 ?    4.0   0.0     0.047        37      50      70 ..     755     775 ..     745     859 .. 0.75

  Alignments for each domain:
  == domain 1  score: 4.8 bits;  conditional E-value: 0.027
   IstB_IS21 22 idfraarsldkrkvkeLatlsfiekkenivllGpsGvGKshlai 65
                ++ +a++ +d+ ++++ ++++  +k  ++vl+G +G+GKs  a+
  KOO23141.1 41 LKRHAQELTDAVALERERGDDPKQKPLSMVLTGNPGTGKSLYAA 84
                55555555566666666666666677789***********8774 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 1.4
   IstB_IS21 111 llilDdl.gllpldqaeaellfeviekr 137
                 +l++Dd   l+p d+ ++++l+++ e+ 
  KOO23141.1 220 VLLVDDAhQLEPSDKGAKRVLYQLTEEM 247
                 7888886257788888999999997654 PP

  == domain 3  score: 4.0 bits;  conditional E-value: 0.047
   IstB_IS21  50 ivllGpsGvGKshlaialgve 70 
                 +++ G +G+GK+ +a  +g+ 
  KOO23141.1 755 FAFQGSPGTGKTTVARRMGML 775
                 6889***********999974 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.3   0.00037      0.29      24      62 ..      62     108 ..      39     257 .. 0.65
   2 ?    5.7   0.0     0.023        18      28      44 ..     756     772 ..     737     850 .. 0.86
   3 ?   -1.0   0.3       2.5     2e+03      72     107 ..    1040    1073 ..    1014    1141 .. 0.60

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.00037
      AAA_16  24 p....elvllsGesGvGKsslvrellralekd.....ggiflrgkcdq 62 
                 p     +++l+G++G+GKs  +   ++ l ++      g ++r +  q
  KOO23141.1  62 PkqkpLSMVLTGNPGTGKSLYAALYAE-LLGElqllpQGRVVRVTGAQ 108
                 444559*************99988775.44443444434444444444 PP

  == domain 2  score: 5.7 bits;  conditional E-value: 0.023
      AAA_16  28 llsGesGvGKsslvrel 44 
                  + G +G+GK++++r+ 
  KOO23141.1 756 AFQGSPGTGKTTVARRM 772
                 578***********875 PP

  == domain 3  score: -1.0 bits;  conditional E-value: 2.5
      AAA_16   72 laqalareellrqlldeaesaeleawrekleealaa 107 
                  la+al + e +++l+ ++++a++++ +e l +a++ 
  KOO23141.1 1040 LAEAL-E-EAVKALGYDDDDASRAELAELLGAAVEG 1073
                  44444.3.4555555554444444444444444442 PP

>> PsiA  PsiA protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.1   0.00038      0.29      89     152 ..    1059    1122 ..    1034    1129 .. 0.84

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.00038
        PsiA   89 srGeyCPlPlssdvqaelfPevlharaerrlkrqelafnrklrreereveqswllrqnllgqav 152 
                  sr e   l  +   ++  fPe l ar  r++  +  a+ + l+r+++ +  ++++ ++ l qa 
  KOO23141.1 1059 SRAELAELLGAAVEGQASFPEDLSARVARQTGMTAGAVGKALKRQAKPMLMARRKEREELVQAG 1122
                  556666665555567899******************************************9995 PP

>> AAA_7  P-loop containing dynein motor region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.4   0.0     0.031        24      35      55 ..      68      88 ..      63     109 .. 0.83
   2 ?    3.8   0.0     0.046        36      36      57 ..     755     776 ..     751     824 .. 0.62

  Alignments for each domain:
  == domain 1  score: 4.4 bits;  conditional E-value: 0.031
       AAA_7 35 pvllvGptGtGKtviikdllk 55
                +++l+G+ GtGK++++  + +
  KOO23141.1 68 SMVLTGNPGTGKSLYAALYAE 88
                6789**********9876655 PP

  == domain 2  score: 3.8 bits;  conditional E-value: 0.046
       AAA_7  36 vllvGptGtGKtviikdllkkl 57 
                 + + G+ GtGKt++++++   +
  KOO23141.1 755 FAFQGSPGTGKTTVARRMGMLF 776
                 5689**********99865444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1178 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       576  (0.0321267); expected 358.6 (0.02)
Passed bias filter:                      497  (0.0277205); expected 358.6 (0.02)
Passed Vit filter:                        76  (0.00423894); expected 17.9 (0.001)
Passed Fwd filter:                        23  (0.00128284); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              23  [number of targets reported over threshold]
# CPU time: 0.89u 0.29s 00:00:01.18 Elapsed: 00:00:00.47
# Mc/sec: 7554.49
//
Query:       KOO23142.1  [L=1383]
Description: voltage-gated ion channel superfamily [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
   1.2e-164  545.4  30.3      4e-53  180.1   1.2    4.1  4  Ion_trans      Ion transport protein
     0.0063   16.2   0.0      0.015   15.0   0.0    1.6  1  GPHH           Voltage-dependent L-type calcium channel, IQ-a
  ------ inclusion threshold ------
      0.046   12.4  58.0      0.031   13.0   3.7    8.4  8  PKD_channel    Polycystin cation channel
       0.24   11.9   1.2         38    4.9   0.0    3.6  3  Adeno_E3_14_5  Early E3 14.5 kDa protein


Domain annotation for each model (and alignments):
>> Ion_trans  Ion transport protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  117.2   0.0   1.5e-37   6.6e-34       3     160 ..      76     264 ..      74     306 .. 0.84
   2 !  136.7  10.1   1.7e-43   7.5e-40      29     237 ..     300     511 ..     289     514 .. 0.90
   3 !  180.1   1.2     9e-57     4e-53       4     244 ..     644     934 ..     641     935 .. 0.92
   4 !  122.7   3.1   3.1e-39   1.4e-35       3     239 ..     987    1230 ..     985    1234 .. 0.89

  Alignments for each domain:
  == domain 1  score: 117.2 bits;  conditional E-value: 1.5e-37
                 HHHHHHHHHHHHHHHHHHCCCSSSSHHHHC.HHHHHHHHHHHHHHHHHHHHHHHHHTH.HHHHHHCHSHHHHHHHHHHHHHHHHH.HHHHHHHHHHHHH CS
   Ion_trans   3 vfelfilllillncvflaletyfpedelek.tileilelvftaiftlemllkilalgl.likkrYlrdpwnilDflvvlpsllsl.vlseesllllsvl 98 
                  f+ fil++il ncv++a +++ ++  + k ++++++e+v++ ift+eml ki a+g+  +++ Yl+d w+ lDf+vv++++l + ++   s+++ sv+
  KOO23142.1  76 PFDAFILVTILANCVTMAWNSPLDPPGTPKaHFIDVCEWVYLLIFTFEMLAKICAYGFvGHDGAYLHDAWCQLDFVVVSLAWLPIlFP---SVGNYSVV 171
                 5999***************999999888889***************************9999*********************88444...69****** PP

                 HHHGGGGGGHHHCHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCC...............................C CS
   Ion_trans  99 rlfrvlrllklisrleglrtlvtalirsvkdllnvlllllvvlfifaligvqlfkgklrek...............................n 160
                 r +r lr+l++++rl+g+ +lv++++ ++++l +v ll+ +++ + +++g++ fkg l+++                               n
  KOO23142.1 172 RSVRALRPLRALKRLPGMPVLVNSILAALPKLSDVTLLFGLLVTVCGIFGIEQFKGELHHRcawpgfqetlgrpelremlplpnvhrlvhrlN 264
                 ***********************************************************8877777777666666666665555555554440 PP

  == domain 2  score: 136.7 bits;  conditional E-value: 1.7e-43
                 HHHC..HHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHCHSHHHHHHHHHHHHHHHHHHHHH......HHHHHHHHHHHHGGGGGGHHHCHSHHHHHH CS
   Ion_trans  29 elek..tileilelvftaiftlemllkilalgllikkrYlrdpwnilDflvvlpsllslvlse......esllllsvlrlfrvlrllklisrleglrtl 119
                 ++++  t le     +t+if++em lk++++g+   + Y++d wn lD ++v++s++++vl+       ++l+ l++lr++rv+r+l+l++++ gl  +
  KOO23142.1 300 QQRDfdTGLESSAKWITWIFIIEMGLKVFGMGC---RAYWSDGWNQLDGTIVIMSIVEIVLTAlfansgTNLSFLRILRMLRVARMLRLMRSWVGLYKI 395
                 333345889999999******************...***********************666667777899**************************** PP

                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCCCCSCCSTSSS..TTTSSSSSSHHHHHHHHHHHHTTSSHHHHHHHHHHHSHHHHHHHHHH CS
   Ion_trans 120 vtalirsvkdllnvlllllvvlfifaligvqlfkgklreknecaktwenp..nngntnFdnfftallwlfrlmttegwgdilyatldekskvaliyfvi 216
                 + +++++v+++ nvlll++++  ifal+g+qlf+g++ e++   ++   p    +++nFd f+ all++f+l t++ w + + + l+  +  a+iy+++
  KOO23142.1 396 ISTVVDAVPQMSNVLLLMFLICTIFALLGMQLFGGQFSEEHGYGDS---PllPLPRYNFDYFGPALLSVFVLTTGV-WFTPMLDGLNVGGPSAIIYYIT 490
                 **************************************66552223...233588999*************88888.********************** PP

                 HHHHHHHHHHHHHHHHHHHHH CS
   Ion_trans 217 fiilgsflllNlliaviadnf 237
                   ++g+++l+Nlliav  + f
  KOO23142.1 491 ATCIGTYILVNLLIAVLLELF 511
                 ****************99887 PP

  == domain 3  score: 180.1 bits;  conditional E-value: 9e-57
                 HHHHHHHHHHHHHHHHHCCCSSSSHHHHC.HHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHCHSHHHHHHHHHHHHHHHHH....HHHHHHHHHHHH CS
   Ion_trans   4 felfilllillncvflaletyfpedelek.tileilelvftaiftlemllkilalgllikkrYlrdpwnilDflvvlpsllsl....vlseesllllsv 97 
                  +++ +  +++++++la++t+   + +   ++l + +++fta+f+le++lk +a+g+     Yl++ wn+lDf+v+l+sl  l    v    +l  l+ 
  KOO23142.1 644 VQVLLMTSVIISSATLAFDTPRLDEASQLaEALAVTNVLFTAVFLLEAILKSIAYGF---YDYLHSGWNVLDFSVLLISLGALlsevV---PALAFLQS 736
                 67889999**********999888666669***************************...********************98855433...579***** PP

                 HHHHGGGGGGHHHCHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCC...................................CC CS
   Ion_trans  98 lrlfrvlrllklisrleglrtlvtalirsvkdllnvlllllvvlfifaligvqlfkgklrek...................................ne 161
                 lr++rvlr+l+l+s+  g+r+++ +l++s+++++nvl +l+ + ++fa++g+qlf+g++  +                                   + 
  KOO23142.1 737 LRALRVLRPLRLLSHNAGMRNVLVSLFESLPSVINVLGVLFALQLVFAILGMQLFMGTFGSCndrsrqlpsecvgvattapaeelatsrrrelkgggGG 835
                 **************************************************************9999999999999999998888888777766665500 PP

                 .......SCCSTSSSTTTSSSSSSHHHHHHHHHHHHTTSSHHHHHHHHHHHS...........HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
   Ion_trans 162 .......caktwenpnngntnFdnfftallwlfrlmttegwgdilyatldek...........skvaliyfvifiilgsflllNlliaviadnfqelte 242
                         ++ w+np  ++ +Fdnf++a+l lf+l t+++w  i+   +d+             + + i+fv+++++g f+ + l+i+v++ +f++++ 
  KOO23142.1 836 ddgeafvGERLWRNP--SFGSFDNFGDAMLLLFVLSTGDDWDAIMFWSMDSPsvpggprkrndMSASSIFFVAWMFIGCFFAMQLFIGVVVAQFNKIKA 932
                 56667887799****..889******************************************999********************************99 PP

                 HH CS
   Ion_trans 243 re 244
                 r+
  KOO23142.1 933 RK 934
                 87 PP

  == domain 4  score: 122.7 bits;  conditional E-value: 3.1e-39
                  HHHHHHHHHHHHHHHHHHCCCSSSS.......HHHHC.HHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHCHSHHHHHHHHHHHHHHHHH...... CS
   Ion_trans    3 vfelfilllillncvflaletyfpe.......delek.tileilelvftaiftlemllkilalgllikkrYlrdpwnilDflvvlpsllsl...... 85  
                   f+l i++l+l n+++la++++  e        e+++  + e +  +ft++f le+l k++a+g    + Y+rd w+++ +  v +s+++       
  KOO23142.1  987 HFSLAITILLLANAMLLACDYWGLEsepphptREQTDsYVYELMLEAFTVLFYLEALGKLRAYGS---LFYFRDEWCRFELQLVGLSVVDQsrvlyl 1080
                  6999***************8888887777766444447***************************...*********************88776666 PP

                  ..HHHH...HHHHHHHHHHHHGGGGGGHHHCHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCCCCSCCSTSSSTTTSSSSS CS
   Ion_trans   86 ..vlse...esllllsvlrlfrvlrllklisrleglrtlvtalirsvkdllnvlllllvvlfifaligvqlfkgklreknecaktwenpnngntnFd 177 
                       +       ll++++++ vlr+l+l+++++g++tlvt  + s+++l nv+ +l++++f+f ++g+q f          + +  +++  + n++
  KOO23142.1 1081 isE--RvvpLPPMLLRMPQALYVLRALRLVQHMRGVQTLVTNTVLSLPSLSNVCSILALLVFMFTVLGMQQF---------TYLRRGEQITADRNYE 1166
                  540..15556799***********************************************************.........666789999******* PP

                  SHHHHHHHHHHHHTTSSHHHHHHHHHHHS...HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
   Ion_trans  178 nfftallwlfrlmttegwgdilyatldek...skvaliyfvifiilgsflllNlliaviadnfqe 239 
                  +f++all +++++t++gw  i+    +     s+ a+ +f++f +l+  ++lNl++avi +nf +
  KOO23142.1 1167 TFGNALLVSLQCLTSDGWSSIMFEARSDPehgSWRAVPFFLSFQVLV-TVVLNLVVAVILENFTS 1230
                  **********************9999888897777777777777775.5678***********86 PP

>> GPHH  Voltage-dependent L-type calcium channel, IQ-associated
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.0   3.3e-06     0.015       2      24 ..    1247    1269 ..    1246    1275 .. 0.85

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 3.3e-06
        GPHH    2 FvrvWaeyDPeAtgrikvqdmye 24  
                  F ++Wa++DP A+ ri ++ + +
  KOO23142.1 1247 FSEIWANFDPDANQRIPAHLLPD 1269
                  899*************8876655 PP

>> PKD_channel  Polycystin cation channel
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.1   0.2   0.00042       1.9     210     265 ..     108     165 ..     103     218 .. 0.86
   2 ?    9.6   0.1   7.2e-05      0.32     224     264 ..     318     359 ..     301     369 .. 0.89
   3 ?    0.9  10.4     0.033   1.5e+02     302     423 ..     369     511 ..     363     513 .. 0.66
   4 ?    7.7   0.4   0.00027       1.2     192     259 ..     651     722 ..     636     732 .. 0.69
   5 ?    1.0   0.6      0.03   1.4e+02     306     358 ..     739     791 ..     724     800 .. 0.80
   6 ?    0.3   1.3     0.047   2.1e+02     398     425 ..     902     929 ..     896     930 .. 0.92
   7 ?   -0.2   0.2     0.067     3e+02     211     258 ..    1024    1072 ..    1018    1086 .. 0.84
   8 ?   13.0   3.7   6.9e-06     0.031     307     425 ..    1099    1230 ..    1091    1231 .. 0.69

  Alignments for each domain:
  == domain 1  score: 7.1 bits;  conditional E-value: 0.00042
                  HHHHHHHHHHHHHHHHHHHHH-------..-------HHHHHHHHHHHHHHHHHHHHH CS
  PKD_channel 210 flllievvfvvfvlyfvveeilkirker..asylrsvwnlldlaivvlsvvlivlail 265
                  f+ ++e v+++++ + + + i+++   +   +yl+++w +ld+++v l  + i++  +
   KOO23142.1 108 FIDVCEWVYLLIFTFEMLAKICAYGFVGhdGAYLHDAWCQLDFVVVSLAWLPILFPSV 165
                  56689999999999999999999887665589**************999887776555 PP

  == domain 2  score: 9.6 bits;  conditional E-value: 7.2e-05
                  HHHHHHH-------.-------HHHHHHHHHHHHHHHHHHHH CS
  PKD_channel 224 yfvveeilkirker.asylrsvwnlldlaivvlsvvlivlai 264
                   f++e+ lk+   + ++y ++ wn+ld  iv++s+v ivl  
   KOO23142.1 318 IFIIEMGLKVFGMGcRAYWSDGWNQLDGTIVIMSIVEIVLTA 359
                  689999999999999************************975 PP

  == domain 3  score: 0.9 bits;  conditional E-value: 0.033
                  HHHHHHHHHGGGGG---------------...---------HHHHHHHHHHHHHHHHHHSSSS-STTSSHHHHHHHHHHHHTT---HH.......... CS
  PKD_channel 302 avlvflttlkllkvlrfnktlslltktla...ralkdvlgfalvivilflayaqlgvllfGtqasnfsnlvksiltlfrlilgdfqyt.......... 386
                   +l +l +l+++++lr+++ +  l k ++   +a++++  + l+++++   +a lg+ lfG q s+      s l    l  ++f+y           
   KOO23142.1 369 SFLRILRMLRVARMLRLMRSWVGLYKIIStvvDAVPQMSNVLLLMFLICTIFALLGMQLFGGQFSEEHGYGDSPLLP--LPRYNFDYFgpallsvfvl 464
                  67889999************988776665111566666666677777777899999999999887766655555443..4445555555556666666 PP

                  ...........HHHHH-TTHHHHHHHHHHHHHHHHHHHHHHHHHHT-X CS
  PKD_channel 387 ...........elesgnrvLGpllllalvflvifillnlflaiindsy 423
                              l +++    ++++++   +  +il+nl++a++ + +
   KOO23142.1 465 ttgvwftpmldGL-NVGGPSAIIYYITATCIGTYILVNLLIAVLLELF 511
                  6666666655333.4444455677777777777777777777777665 PP

  == domain 4  score: 7.7 bits;  conditional E-value: 0.00027
                  EEEEEEE---....---SHHHHHHHHHHHHHHHHHHHHHHHHH-------.-------HHHHHHHHHHHHHHH CS
  PKD_channel 192 svsvqsvkLl....ryvtklslflllievvfvvfvlyfvveeilkirker.asylrsvwnlldlaivvlsvvl 259
                  sv + s++L+    r++++ +l  +l  v  v+f  +f  e ilk    +   yl+s wn+ld+ ++++s+ +
   KOO23142.1 651 SVIISSATLAfdtpRLDEASQLAEAL-AVTNVLFTAVFLLEAILKSIAYGfYDYLHSGWNVLDFSVLLISLGA 722
                  44455555542222334444444444.677888999999999999999999***************9998755 PP

  == domain 5  score: 1.0 bits;  conditional E-value: 0.03
                  HHHHHGGGGG------------------------HHHHHHHHHHHHHHHHHHS CS
  PKD_channel 306 flttlkllkvlrfnktlslltktlaralkdvlgfalvivilflayaqlgvllf 358
                  +l +l+ l++l+ n+ ++ +   l+++l+ v+ +  v++ l l++a+lg+ lf
   KOO23142.1 739 ALRVLRPLRLLSHNAGMRNVLVSLFESLPSVINVLGVLFALQLVFAILGMQLF 791
                  45667777788888999999999999999999999999999999999987665 PP

  == domain 6  score: 0.3 bits;  conditional E-value: 0.047
                  HHHHHHHHHHHHHHHHHHHHHHHT-XXX CS
  PKD_channel 398 llllalvflvifillnlflaiindsyee 425
                  ++++a +f+ +f +++lf+ ++  ++++
   KOO23142.1 902 IFFVAWMFIGCFFAMQLFIGVVVAQFNK 929
                  89********************999987 PP

  == domain 7  score: -0.2 bits;  conditional E-value: 0.067
                   HHHHHHHHHHHHHHHHHHHH-------.-------HHHHHHHHHHHHHH CS
  PKD_channel  211 lllievvfvvfvlyfvveeilkirker.asylrsvwnlldlaivvlsvv 258 
                    ++ e+++  f ++f  e + k+r  + + y+r+ w   +l +v lsvv
   KOO23142.1 1024 SYVYELMLEAFTVLFYLEALGKLRAYGsLFYFRDEWCRFELQLVGLSVV 1072
                   456677888899999999999******9******************998 PP

  == domain 8  score: 13.0 bits;  conditional E-value: 6.9e-06
                   HHHHGGGGG----------.------..--------.H.HHHHHHHHHHHHHHHHHSSSS-...STTSSHHHHHHHHHHHHTT---HH........ CS
  PKD_channel  307 lttlkllkvlrfnktlsll.tktlar..alkdvlgf.a.lvivilflayaqlgvllfGtqa...snfsnlvksiltlfrlilgdfqyt........ 386 
                   l +l++l++++ ++ ++ l t+t+ +  +l++v+++ a lv++  +l   q+++l  G+q+    n++++ +++l+ ++ +l + +++        
   KOO23142.1 1099 LYVLRALRLVQHMRGVQTLvTNTVLSlpSLSNVCSIlAlLVFMFTVLGMQQFTYLRRGEQItadRNYETFGNALLVSLQ-CLTSDGWSsimfears 1193
                   6677888888877777755144443223666777642313333345677899******98633369*********9965.5555566655554664 PP

                   HHHHH-TTHHHHHHHHHHHHHHHHHHHHHHHHHHT-XXX CS
  PKD_channel  387 elesgnrvLGpllllalvflvifillnlflaiindsyee 425 
                   +  + + +  + ++l++++lv + +lnl++a+i +++++
   KOO23142.1 1194 DP-EHGSWRAVPFFLSFQVLVTV-VLNLVVAVILENFTS 1230
                   44.567899*********98765.68*********9986 PP

>> Adeno_E3_14_5  Early E3 14.5 kDa protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.2         1   4.7e+03      28      56 ..     317     345 ..     306     357 .. 0.76
   2 ?    3.3   0.0     0.028   1.2e+02      36      55 ..     693     712 ..     662     735 .. 0.70
   3 ?    4.9   0.0    0.0086        38      25      72 ..    1131    1178 ..    1120    1183 .. 0.89

  Alignments for each domain:
  == domain 1  score: -1.8 bits;  conditional E-value: 1
  Adeno_E3_14_5  28 iisvmvfcstifalaiypyldigwnaida 56 
                     i ++ +   +f +    y   gwn +d 
     KOO23142.1 317 WIFIIEMGLKVFGMGCRAYWSDGWNQLDG 345
                    34455667789999999********9996 PP

  == domain 2  score: 3.3 bits;  conditional E-value: 0.028
  Adeno_E3_14_5  36 stifalaiypyldigwnaid 55 
                       +a   y yl  gwn +d
     KOO23142.1 693 LKSIAYGFYDYLHSGWNVLD 712
                    23357789*********998 PP

  == domain 3  score: 4.9 bits;  conditional E-value: 0.0086
  Adeno_E3_14_5   25 lyaiisvmvfcstifalaiypyldigwnaidamnhptfpvpaviplqq 72  
                     + +i++++vf  t++ +  + yl  g +     n+ tf    ++ lq 
     KOO23142.1 1131 VCSILALLVFMFTVLGMQQFTYLRRGEQITADRNYETFGNALLVSLQC 1178
                     568999*********************99999******9999999886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1383 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       762  (0.042501); expected 358.6 (0.02)
Passed bias filter:                      341  (0.0190195); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.83u 0.32s 00:00:01.14 Elapsed: 00:00:00.47
# Mc/sec: 8912.46
//
Query:       KOO23143.1  [L=243]
Description: hypothetical protein Ctob_001876 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (243 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       260  (0.0145016); expected 358.6 (0.02)
Passed bias filter:                      210  (0.0117129); expected 358.6 (0.02)
Passed Vit filter:                         6  (0.000334653); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.40u 0.27s 00:00:00.67 Elapsed: 00:00:00.42
# Mc/sec: 1736.51
//
Query:       KOO23144.1  [L=192]
Description: hypothetical protein Ctob_001877 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
     0.0092   16.1   4.7      0.018   15.1   3.9    2.0  2  PAN_2     PAN-like domain
  ------ inclusion threshold ------
      0.011   15.7   0.1      0.028   14.4   0.2    1.7  2  PAN_1     PAN domain
       0.25   11.3   3.2       0.61   10.0   3.2    1.6  1  PAN_4     PAN domain


Domain annotation for each model (and alignments):
>> PAN_2  PAN-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.0       1.6   9.6e+03       7      19 ..      44      56 ..      41      61 .. 0.83
   2 !   15.1   3.9     3e-06     0.018      32      59 ..     145     170 ..     118     173 .. 0.81

  Alignments for each domain:
  == domain 1  score: -3.2 bits;  conditional E-value: 1.6
       PAN_2  7 gFlklknvklPdt 19
                +F++++ v lP++
  KOO23144.1 44 VFMAIPGVPLPEE 56
                6999999999986 PP

  == domain 2  score: 15.1 bits;  conditional E-value: 3e-06
       PAN_2  32 eCkerClsnCsCtAYayadirggsgCli 59 
                  C+++C +n +CtAYa  +   ++ C i
  KOO23144.1 145 VCEQSCDKNPACTAYAVDK--SQQHCYI 170
                 6***************985..4688876 PP

>> PAN_1  PAN domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.0       1.4   8.2e+03       3      19 ..      18      34 ..      17      40 .. 0.71
   2 ?   14.4   0.2   4.6e-06     0.028      26      58 ..     145     175 ..     127     187 .. 0.87

  Alignments for each domain:
  == domain 1  score: -3.1 bits;  conditional E-value: 1.4
                ECEEEEEEEESEEEEEE CS
       PAN_1  3 fqkipgstlsgedkkti 19
                ++++pg+++ g+  k  
  KOO23144.1 18 YVTVPGVYFPGSTTKAA 34
                67888999888777766 PP

  == domain 2  score: 14.4 bits;  conditional E-value: 4.6e-06
                 HHHHHHHHSTTS--SEEEEETTTTEEEEEESSS CS
       PAN_1  26 eCaerCseekkfrCrsftfnnstkeCylksedk 58 
                  C++ C +++   C+++  ++s++ Cy+   ++
  KOO23144.1 145 VCEQSCDKNPA--CTAYAVDKSQQHCYIGGATS 175
                 7**********..**************877666 PP

>> PAN_4  PAN domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   3.2    0.0001      0.61      21      49 ..     146     169 ..     143     170 .. 0.86

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.0001
       PAN_4  21 CcaaCaadsnCnawvyvkpavkgayarCw 49 
                 C++ C++++ C a+   k     ++++C+
  KOO23144.1 146 CEQSCDKNPACTAYAVDK-----SQQHCY 169
                 *************98766.....777776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (192 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       410  (0.022868); expected 358.6 (0.02)
Passed bias filter:                      287  (0.0160076); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.42u 0.24s 00:00:00.65 Elapsed: 00:00:00.42
# Mc/sec: 1377.72
//
Query:       KOO23145.1  [L=320]
Description: chromate transporter [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      1e-35  123.2  11.7      1e-35  123.2  11.7    2.5  3  Chromate_transp  Chromate transporter


Domain annotation for each model (and alignments):
>> Chromate_transp  Chromate transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.1   0.5   0.00031       5.6     103     150 ..       8      68 ..       3      75 .. 0.62
   2 ?   -1.9   0.1      0.18   3.3e+03     123     132 ..     115     123 ..      81     138 .. 0.56
   3 !  123.2  11.7   5.8e-40     1e-35       2     156 ..     140     306 ..     139     307 .. 0.93

  Alignments for each domain:
  == domain 1  score: 7.1 bits;  conditional E-value: 0.00031
  Chromate_transp 103 lvkaaleglnaavvglilaaalslakk...........iallaflllllfkvs...pilvil 150
                      +++++  gl+aa+v + ++aal+l  k           + l+a++ ll  +++   p+ +++
       KOO23145.1   8 TLQGVQMGLTAAAVSIAIKAALDLSAKlasepltrwlnA-LAAAANLLAPDIPwvlPLSLFV 68 
                      5788999***************76555666777775532.3333333334444332333333 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 0.18
  Chromate_transp 123 alslakkial 132
                      +  l+++ial
       KOO23145.1 115 LC-LITWIAL 123
                      22.1112211 PP

  == domain 3  score: 123.2 bits;  conditional E-value: 5.8e-40
  Chromate_transp   2 elflfflkiGllifGGgyavipllreevverkgwlteeefldglalaqalPGPiavnlatfvGylil.gvlGaliatlgfflPsfllilllapl 94 
                      +lf+ f+++G+l++GGg++v+pll  evv   ++++e +fl+g+a+aqa+PGP++ n+a+++G + + g lGa+ia++g+flP++lli++++p+
       KOO23145.1 140 DLFERFYRAGSLVWGGGPVVLPLLLPEVVP--RFVSEVQFLQGFAFAQAMPGPMF-NFAAYLGGV-YqGPLGAIIAWFGLFLPGLLLIYAALPF 229
                      69***************************9..48********************9.********9.66************************** PP

  Chromate_transp  95 leklrknplvkaaleglnaavvglilaaalslakk........iallaflllllf.......kvspilvillaallg 156
                      +    ++p  +++l+g+naa+ gl++aaa++l+          i+ll+f++ ++f       k++p + i+++allg
       KOO23145.1 230 WALATTHPGTQSFLKGVNAAASGLVIAAAFTLFDVvrtppqraITLLTFIIHNYFgpknfgpKYNPPATIAIGALLG 306
                      ***978************************76555677899999999******999998888888899******998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (320 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       507  (0.0282782); expected 358.6 (0.02)
Passed bias filter:                      251  (0.0139997); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.27s 00:00:00.74 Elapsed: 00:00:00.44
# Mc/sec: 2197.73
//
Query:       KOO23146.1  [L=144]
Description: ATP-dependent clp protease adaptor protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    7.6e-12   44.9   0.0    1.1e-11   44.4   0.0    1.2  1  ClpS      ATP-dependent Clp protease adaptor protein ClpS


Domain annotation for each model (and alignments):
>> ClpS  ATP-dependent Clp protease adaptor protein ClpS
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.4   0.0     6e-16   1.1e-11       3      68 ..      65     130 ..      63     136 .. 0.92

  Alignments for each domain:
  == domain 1  score: 44.4 bits;  conditional E-value: 6e-16
                 X--EEEEEES-S-S-HHHHHHHHHHHSSS-HHHHHHHHHHHHHHSEEEEEEE-HHHHHHHHHHHHH CS
        ClpS   3 pkqYkvvLlNDdvttmefVvevLqkvfgkskeeAteimlevhreGravvgvgtreiaetkveqver 68 
                 +++Y v L+ND ++  e+V +vL+ v+  ++++A++im+e++ e +a vg+++r +a++  + +++
  KOO23146.1  65 SEEYSVFLMNDGFNMREYVSRVLMMVCYVDEARAERIMMEANWEYQACVGTYERPVAQHVLDGLRK 130
                 579******************************************************998877766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (144 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       328  (0.0182944); expected 358.6 (0.02)
Passed bias filter:                      295  (0.0164538); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.25s 00:00:00.62 Elapsed: 00:00:00.39
# Mc/sec: 1106.37
//
Query:       KOO23147.1  [L=201]
Description: hypothetical protein Ctob_001878 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.048   13.6   0.7        0.1   12.6   0.6    1.7  2  PAN_1     PAN domain
      0.063   13.4   2.6       0.11   12.7   1.6    2.0  2  PAN_2     PAN-like domain


Domain annotation for each model (and alignments):
>> PAN_1  PAN domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.0      0.92   8.3e+03       3      21 ..      27      45 ..      26      49 .. 0.71
   2 ?   12.6   0.6   1.1e-05       0.1      24      53 ..     152     179 ..     129     193 .. 0.88

  Alignments for each domain:
  == domain 1  score: -3.2 bits;  conditional E-value: 0.92
                ECEEEEEEEESEEEEEEEC CS
       PAN_1  3 fqkipgstlsgedkktitv 21
                ++++pg+ + +++ kt +v
  KOO23147.1 27 YVTVPGVFFPNSKSKTAGV 45
                6788888888887777744 PP

  == domain 2  score: 12.6 bits;  conditional E-value: 1.1e-05
                 HHHHHHHHHHSTTS--SEEEEETTTTEEEE CS
       PAN_1  24 aeeCaerCseekkfrCrsftfnnstkeCyl 53 
                 a  C++ C ++++  C+ +  ++++++Cy+
  KOO23147.1 152 AFVCEQSCDKNPE--CTVYAVDKDQQNCYI 179
                 568**********..*************97 PP

>> PAN_2  PAN-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.0       1.3   1.2e+04       7      22 ..      26      41 ..      23      43 .. 0.74
   2 ?   12.7   1.6   1.2e-05      0.11      32      59 ..     154     179 ..     127     181 .. 0.84

  Alignments for each domain:
  == domain 1  score: -3.5 bits;  conditional E-value: 1.3
       PAN_2  7 gFlklknvklPdtsaa 22
                 +++++ v  P+++++
  KOO23147.1 26 DYVTVPGVFFPNSKSK 41
                5678889999988765 PP

  == domain 2  score: 12.7 bits;  conditional E-value: 1.2e-05
       PAN_2  32 eCkerClsnCsCtAYayadirggsgCli 59 
                  C+++C +n  Ct Ya  +  +++ C i
  KOO23147.1 154 VCEQSCDKNPECTVYAVDK--DQQNCYI 179
                 6***************975..6788876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (201 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       450  (0.025099); expected 358.6 (0.02)
Passed bias filter:                      323  (0.0180155); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.44u 0.24s 00:00:00.68 Elapsed: 00:00:00.43
# Mc/sec: 1411.00
//
Query:       KOO23148.1  [L=611]
Description: bifunctional coenzyme a synthase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.8e-38  130.9   0.7    1.6e-30  106.1   0.0    2.6  2  CoaE             Dephospho-CoA kinase
    4.8e-06   26.8   0.0    1.6e-05   25.1   0.0    1.9  2  CTP_transf_like  Cytidylyltransferase-like
     0.0054   17.0   0.3      0.013   15.8   0.3    1.6  1  HD               HD domain


Domain annotation for each model (and alignments):
>> CoaE  Dephospho-CoA kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.3   0.3   1.4e-08   8.3e-05       1      41 [.     161     201 ..     161     204 .. 0.89
   2 !  106.1   0.0   2.6e-34   1.6e-30      26     171 ..     213     360 ..     211     366 .. 0.96

  Alignments for each domain:
  == domain 1  score: 22.3 bits;  conditional E-value: 1.4e-08
                 EEEEEEESTTSSHHHHHHHHHHTT-EEEEHHHHHHHTTCCT CS
        CoaE   1 livgltGgiasGKstvanlfadlgvpivDaDlvArqvvepg 41 
                 +++gltGgiasGKst+ +++ +l+ ++  a  +A ++ + g
  KOO23148.1 161 YVIGLTGGIASGKSTARKMLVELASEMASAAELAGEMAAAG 201
                 69*********************999999999988877665 PP

  == domain 2  score: 106.1 bits;  conditional E-value: 2.6e-34
                 EEEEHHHHHHHTTCCTHHHHHHHHHHHGGGCB.TTSSE-HHHHHHHHHTSH..HHHHHHHHHHHHHHHHHHHHHHHH--SSEEEEE-TTTTTTTGGGGS CS
        CoaE  26 pivDaDlvArqvvepgsealkkiveeFgeeildedGeLdReaLrkkvFadp..eekkaLnallhPlirreikkelakleskyvlldvPLLvEkqlekli 122
                 + +D Dl+A+++ +pg++ ++++v++Fg++i+ +dG++dR+aL+ +vF+++  ++ k L  ++ P+ ++  ++++a+ ++++v+++   L+E+q+++++
  KOO23148.1 213 EAIDCDLLAHEAYQPGTPPFAALVAAFGNAIVSADGTIDRKALGALVFHEDggANMKRLTDIVWPATAALAASKIAASKAQVVVMEAAVLLEAQWDAMV 311
                 579**********************************************984467889***************************************** PP

                 SEEEEEE--HHHHHHHHHHCCTSTHHHHHHHHHHS--HHHHHHH-SEEE CS
        CoaE 123 ervlvvdvelelqveRlvardgvseeevkaiiaaQlseeerlaladvvl 171
                 ++v+v++++    +eRl +r+g+s+e+++a+ia Q+++e+rla+a v l
  KOO23148.1 312 DEVWVISASHPAVLERLASRNGLSTEQAEARIAKQMTTEQRLARAHVPL 360
                 *********************************************8765 PP

>> CTP_transf_like  Cytidylyltransferase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.1   0.0   2.7e-09   1.6e-05       2      58 ..       7      65 ..       6     104 .. 0.85
   2 ?   -3.0   0.0       1.3   7.8e+03     131     143 .]     123     135 ..     113     135 .. 0.83

  Alignments for each domain:
  == domain 1  score: 25.1 bits;  conditional E-value: 2.7e-09
                     EEE--TT--HHHHHHHHHHHHHSSESEEEEEESSTHCSST-..SCSSTHHHHHHHHHHH CS
  CTP_transf_like  2 agGtFDpiHlGHlrlleqakklleedlivgvpsdeppkkkk..kplasaeeRlemlela 58
                     +gGtFD +H GH  ll  a++  +e l++gv  ++  +kk+  + +++ e Rl+ +  +
       KOO23148.1  7 VGGTFDYLHVGHKLLLSLAAYCASERLVCGVSDAPLLQKKTlrELMQPIELRLALVDDF 65
                     69***********************9999999999999997778889999999998776 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 1.3
                      CTTTCSHHHHHHH CS
  CTP_transf_like 131 rtngiSstkirer 143
                      ++ ++Sst+ r++
       KOO23148.1 123 EEDKVSSTDARRA 135
                      56799****9985 PP

>> HD  HD domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.3   2.1e-06     0.013      21      98 ..     450     520 ..     430     550 .. 0.71

  Alignments for each domain:
  == domain 1  score: 15.8 bits;  conditional E-value: 2.1e-06
                 H...HHHHHHHHHHHHHTTTTHHHHTS..HHHHHHCTCCHHHHHHHHHHHHHHHHHHHHH...HHHHHHHHHTTCCHHHHHHHH CS
          HD  21 e...eedrellllaaLlHDiGkgpfgdafekkeeefekflaHekvgaeilrevekrlgld...ledvaklirehheswegkkrp 98 
                        + l++laa +HD + +p+ +              +e  +ae+ r+++   +l+   +++va+li++      g+ + 
  KOO23148.1 450 ArglLQRPLLVKLAAFFHDAVYDPSAS-------------HNEMRSAEMWRRFGTATKLSpddVDIVAALIERTATHFKGEAKA 520
                 235678999***************776.............5999*************999***********9987777766555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (611 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       617  (0.0344135); expected 358.6 (0.02)
Passed bias filter:                      398  (0.0221987); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.57u 0.25s 00:00:00.82 Elapsed: 00:00:00.41
# Mc/sec: 4465.59
//
Query:       KOO23149.1  [L=342]
Description: hypothetical protein Ctob_001868 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      3e-09   36.2  19.0       0.29   11.3   0.2    7.1  7  LRR_6     Leucine Rich repeat
    7.3e-06   25.8   1.4         28    5.8   0.0    5.8  7  LRR_1     Leucine Rich Repeat
    4.9e-05   23.0   4.3        8.9    6.2   0.1    5.3  4  LRR_8     Leucine rich repeat
    0.00011   22.5   8.9       0.21   12.1   0.1    4.4  4  LRR_4     Leucine Rich repeats (2 copies)


Domain annotation for each model (and alignments):
>> LRR_6  Leucine Rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.2   1.8      0.12   5.2e+02       7      16 ..       4      13 ..       1      19 [. 0.78
   2 ?   -3.5   0.0       3.5   1.6e+04      18      24 .]      26      32 ..      25      32 .. 0.87
   3 !   11.3   0.2   6.4e-05      0.29       5      17 ..      41      53 ..      38      53 .. 0.93
   4 !    7.3   0.1    0.0012       5.3       5      24 .]      82     101 ..      81     101 .. 0.94
   5 !    9.7   0.0   0.00021      0.95       3      24 .]     110     131 ..     108     131 .. 0.91
   6 !    7.2   0.1    0.0013       5.9       5      24 .]     140     159 ..     140     159 .. 0.96
   7 !    6.6   0.0    0.0021       9.4       1      12 [.     164     175 ..     164     177 .. 0.89

  Alignments for each domain:
  == domain 1  score: 1.2 bits;  conditional E-value: 0.12
       LRR_6  7 eLdLsgNdIg 16
                 LdLs N++ 
  KOO23149.1  4 QLDLSNNKLC 13
                5999999874 PP

  == domain 2  score: -3.5 bits;  conditional E-value: 3.5
       LRR_6 18 eGaeaLa 24
                eG++a+a
  KOO23149.1 26 EGITAIA 32
                89*9998 PP

  == domain 3  score: 11.3 bits;  conditional E-value: 6.4e-05
       LRR_6  5 LteLdLsgNdIgD 17
                Lt+L+Ls+N+Ig+
  KOO23149.1 41 LTSLNLSSNGIGG 53
                9**********95 PP

  == domain 4  score: 7.3 bits;  conditional E-value: 0.0012
       LRR_6   5 LteLdLsgNdIgDeGaeaLa 24 
                 Lt+L+Ls N ++ e ++a +
  KOO23149.1  82 LTALNLSNNYLNSESVSAVC 101
                 9*************999987 PP

  == domain 5  score: 9.7 bits;  conditional E-value: 0.00021
       LRR_6   3 thLteLdLsgNdIgDeGaeaLa 24 
                 t+L +L++  N +g +Ga++ a
  KOO23149.1 110 TKLASLNMGKNRFGPVGAKSVA 131
                 6899**************9976 PP

  == domain 6  score: 7.2 bits;  conditional E-value: 0.0013
       LRR_6   5 LteLdLsgNdIgDeGaeaLa 24 
                 Lt+L+L+ N++g +G +a++
  KOO23149.1 140 LTKLSLAKNELGEVGTKAIC 159
                 8**************99998 PP

  == domain 7  score: 6.6 bits;  conditional E-value: 0.0021
       LRR_6   1 snthLteLdLsg 12 
                 +n +L+eLd+sg
  KOO23149.1 164 QNKTLKELDISG 175
                 599*******98 PP

>> LRR_1  Leucine Rich Repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.5   0.1     0.034   1.5e+02       5      15 ..       5      15 ..       4      21 .. 0.79
   2 ?    4.4   0.0     0.018        80       2      12 ..      41      51 ..      40      65 .. 0.86
   3 !    5.8   0.0    0.0063        28       2      15 ..      82      95 ..      81     106 .. 0.79
   4 ?   -0.9   0.0      0.98   4.4e+03       1      12 [.     111     122 ..     111     131 .. 0.80
   5 ?   -1.4   0.0       1.5   6.6e+03       2      12 ..     140     150 ..     139     160 .. 0.80
   6 ?    4.7   0.0     0.014        65       2      12 ..     168     178 ..     167     190 .. 0.80
   7 ?   -3.7   0.1         4   1.8e+04       4       9 ..     286     291 ..     284     297 .. 0.68

  Alignments for each domain:
  == domain 1  score: 3.5 bits;  conditional E-value: 0.034
       LRR_1  5 LdLsnnpllgl 15
                LdLsnn l g+
  KOO23149.1  5 LDLSNNKLCGI 15
                9******9544 PP

  == domain 2  score: 4.4 bits;  conditional E-value: 0.018
       LRR_1  2 LrhLdLsnnpl 12
                L++L+Ls+n +
  KOO23149.1 41 LTSLNLSSNGI 51
                89*******88 PP

  == domain 3  score: 5.8 bits;  conditional E-value: 0.0063
       LRR_1  2 LrhLdLsnnpllgl 15
                L+ L+Lsnn l + 
  KOO23149.1 82 LTALNLSNNYLNSE 95
                899*******9544 PP

  == domain 4  score: -0.9 bits;  conditional E-value: 0.98
       LRR_1   1 nLrhLdLsnnpl 12 
                 +L +L+++ n++
  KOO23149.1 111 KLASLNMGKNRF 122
                 6779***99987 PP

  == domain 5  score: -1.4 bits;  conditional E-value: 1.5
       LRR_1   2 LrhLdLsnnpl 12 
                 L++L L  n l
  KOO23149.1 140 LTKLSLAKNEL 150
                 899***99988 PP

  == domain 6  score: 4.7 bits;  conditional E-value: 0.014
       LRR_1   2 LrhLdLsnnpl 12 
                 L++Ld+s+ ++
  KOO23149.1 168 LKELDISGSHN 178
                 9*****99887 PP

  == domain 7  score: -3.7 bits;  conditional E-value: 4
       LRR_1   4 hLdLsn 9  
                 hL+L +
  KOO23149.1 286 HLHLDH 291
                 888876 PP

>> LRR_8  Leucine rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.5   0.1     0.014        61      29      41 ..       4      16 ..       2      19 .. 0.65
   2 !    4.4   0.0     0.007        31      26      60 ..      40      50 ..      27      54 .. 0.60
   3 !    6.2   0.1     0.002       8.9      26      39 ..      81      94 ..      71     101 .. 0.78
   4 !    5.1   0.1    0.0043        19       3      34 ..     140     175 ..     138     186 .. 0.68

  Alignments for each domain:
  == domain 1  score: 3.5 bits;  conditional E-value: 0.014
                EEE--SS---GGG CS
       LRR_8 29 vLdLsnNllttls 41
                 LdLsnN+l  ++
  KOO23149.1  4 QLDLSNNKLCGID 16
                5777777776655 PP

  == domain 2  score: 4.4 bits;  conditional E-value: 0.007
                T--EEE--SS---GGGGGGGTT--S-.EEE--SS- CS
       LRR_8 26 nLkvLdLsnNllttlspgafsgLpsLrsLdLsgNr 60
                +L++L+Ls+N                         
  KOO23149.1 40 GLTSLNLSSN------------------------G 50
                3444444444........................3 PP

  == domain 3  score: 6.2 bits;  conditional E-value: 0.002
                T--EEE--SS---G CS
       LRR_8 26 nLkvLdLsnNlltt 39
                +L+ L+LsnN l++
  KOO23149.1 81 ALTALNLSNNYLNS 94
                67888888888765 PP

  == domain 4  score: 5.1 bits;  conditional E-value: 0.0043
                 -SEEE-TTS--SEE-TTS....STT-TT--EEE--S CS
       LRR_8   3 LtsLdLsnNrltslddea....FkglsnLkvLdLsn 34 
                 Lt+L+L +N l +++ +a     ++++ Lk+Ld+s 
  KOO23149.1 140 LTKLSLAKNELGEVGTKAiceaLEQNKTLKELDISG 175
                 788888888888888754111156677777777775 PP

>> LRR_4  Leucine Rich repeats (2 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.6   0.1     0.044     2e+02       6      13 ..       5      12 ..       3      24 .. 0.76
   2 !    4.7   0.0    0.0099        44       3      13 ..      41      51 ..      27      56 .. 0.80
   3 ?    4.6   1.2      0.01        46       3      18 ..      82      97 ..      80     127 .. 0.59
   4 !   12.1   0.1   4.7e-05      0.21       3      33 ..     140     176 ..     139     183 .. 0.86

  Alignments for each domain:
  == domain 1  score: 2.6 bits;  conditional E-value: 0.044
                EE--SS-- CS
       LRR_4  6 LdLsnNql 13
                LdLsnN+l
  KOO23149.1  5 LDLSNNKL 12
                67777765 PP

  == domain 2  score: 4.7 bits;  conditional E-value: 0.0099
                --EEE--SS-- CS
       LRR_4  3 LevLdLsnNql 13
                L++L+Ls+N +
  KOO23149.1 41 LTSLNLSSNGI 51
                67777777766 PP

  == domain 3  score: 4.6 bits;  conditional E-value: 0.01
                --EEE--SS---E-S- CS
       LRR_4  3 LevLdLsnNqltdipl 18
                L+ L+LsnN l + + 
  KOO23149.1 82 LTALNLSNNYLNSESV 97
                7888888888877666 PP

  == domain 4  score: 12.1 bits;  conditional E-value: 4.7e-05
                 --EEE--SS---E-S-......HHH-TT--EEE-.-S CS
       LRR_4   3 LevLdLsnNqltdipl......leklpnLkeLdLsgN 33 
                 L++L+L+ N l +++       le+++ LkeLd+sg 
  KOO23149.1 140 LTKLSLAKNELGEVGTkaiceaLEQNKTLKELDISGS 176
                 9***************998777779999******663 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (342 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       374  (0.0208601); expected 358.6 (0.02)
Passed bias filter:                      319  (0.0177924); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.42u 0.23s 00:00:00.65 Elapsed: 00:00:00.36
# Mc/sec: 2827.11
//
Query:       KOO23150.1  [L=221]
Description: amp dependent ligase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    4.9e-11   41.9   0.0    6.1e-11   41.6   0.0    1.2  1  AMP-binding  AMP-binding enzyme


Domain annotation for each model (and alignments):
>> AMP-binding  AMP-binding enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.6   0.0   3.4e-15   6.1e-11     356     419 ..      71     143 ..       4     147 .. 0.73

  Alignments for each domain:
  == domain 1  score: 41.6 bits;  conditional E-value: 3.4e-15
                  SCBEETTSEEEEEEEETT.....S-SEBTT-HHHHHHHEE.E..T.CC.EEEEEEEEEEETTSEEEEEEECCCE CS
  AMP-binding 356 gepvpdgeeGellvrgpg.....vmkgYlkkpeataeafd.s..e.gr.wlrTGDlgrldedGyleivgRkkdl 419
                  g p+++ge+Gell +  +     ++ gY  + eat+++++ +  + g+ w+rTGDl   d+dG +++v+R  d+
   KOO23150.1  71 GVPCQPGEPGELLGKVDQrdasrNFAGYTDR-EATRRKLVfDvlKrGDcWFRTGDLLQADADGFVYFVDRMGDT 143
                  56778********6665444555******88.99999987447856889*********************9997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (221 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       237  (0.0132188); expected 358.6 (0.02)
Passed bias filter:                      221  (0.0123264); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.20s 00:00:00.58 Elapsed: 00:00:00.36
# Mc/sec: 1864.16
//
Query:       KOO23151.1  [L=252]
Description: variant sh3 domain containing protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.5e-12   47.0   0.0    3.2e-12   46.0   0.0    1.6  1  SH3_2     Variant SH3 domain
    2.2e-10   40.2   0.0    4.6e-10   39.2   0.0    1.5  1  SH3_9     Variant SH3 domain
    1.5e-08   34.1   0.1    3.2e-08   33.1   0.1    1.5  1  SH3_1     SH3 domain
  ------ inclusion threshold ------
       0.62   10.1   7.9       0.74    9.8   0.4    4.1  3  MORN      MORN repeat


Domain annotation for each model (and alignments):
>> SH3_2  Variant SH3 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.0   0.0   7.1e-16   3.2e-12       2      55 ..       4      54 ..       3      56 .. 0.96

  Alignments for each domain:
  == domain 1  score: 46.0 bits;  conditional E-value: 7.1e-16
                EEESS-B-SCGCCB--B-TTEEEEEE..EEEECTTEEEEEECCCEEEEEGCGEE CS
       SH3_2  2 vraiedyvgedkseLsfkkGdvikvlslgskdsdgwwegevgGrvGlfPsslve 55
                +r+++++ +e k+e+s+ +Gd++ v+   +++sdgwweg+ g+r+G+fP  +v+
  KOO23151.1  4 ARCMQSFHAEQKGEISLAVGDLVLVT---DQGSDGWWEGSCGKRKGIFPGAFVQ 54
                69999*********************...********************99998 PP

>> SH3_9  Variant SH3 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.2   0.0     1e-13   4.6e-10       3      49 .]       8      54 ..       7      54 .. 0.95

  Alignments for each domain:
  == domain 1  score: 39.2 bits;  conditional E-value: 1e-13
       SH3_9  3 ypyepreddeLsLqrGDvitvieesedgWlegsltGrtGlvPanyve 49
                  + + ++ e+sL +GD ++v ++ +dgW+egs + r+G +P ++v+
  KOO23151.1  8 QSFHAEQKGEISLAVGDLVLVTDQGSDGWWEGSCGKRKGIFPGAFVQ 54
                5789999***************999********************97 PP

>> SH3_1  SH3 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.1   0.1     7e-12   3.2e-08       6      47 ..      10      49 ..       7      50 .. 0.95

  Alignments for each domain:
  == domain 1  score: 33.1 bits;  conditional E-value: 7e-12
                BEXSSTTBXEBSTTEEEEEEEECSSSEEEEEETTSTEEEEEE CS
       SH3_1  6 YeaeesdELsfkkGDviivleksedgWwkgrlkgtgkeGliP 47
                + ae+++E+s+  GD + v ++  dgWw+g +   +++G++P
  KOO23151.1 10 FHAEQKGEISLAVGDLVLVTDQGSDGWWEGSCG--KRKGIFP 49
                99*******************************..58***** PP

>> MORN  MORN repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.3   0.1     0.083   3.7e+02       8      20 ..     197     209 ..     195     212 .. 0.76
   2 ?    9.8   0.4   0.00016      0.74       2      22 ..     214     234 ..     213     235 .. 0.91
   3 ?    0.5   0.2      0.16     7e+02       2      12 ..     237     247 ..     236     248 .. 0.87

  Alignments for each domain:
  == domain 1  score: 1.3 bits;  conditional E-value: 0.083
        MORN   8 GkrhGkGvytwpd 20 
                 G +hG G +   d
  KOO23151.1 197 GHPHGMGELLLLD 209
                 889****886555 PP

  == domain 2  score: 9.8 bits;  conditional E-value: 0.00016
        MORN   2 eGeWknGkrhGkGvytwpdGd 22 
                  G +++G  hG Gvy+   G+
  KOO23151.1 214 VGMFVHGAAHGDGVYYDCKGS 234
                 599*************99998 PP

  == domain 3  score: 0.5 bits;  conditional E-value: 0.16
        MORN   2 eGeWknGkrhG 12 
                 +G W ++kr G
  KOO23151.1 237 SGAWDGNKRVG 247
                 699******99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (252 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       258  (0.0143901); expected 358.6 (0.02)
Passed bias filter:                      234  (0.0130515); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.38u 0.24s 00:00:00.62 Elapsed: 00:00:00.37
# Mc/sec: 2015.66
//
Query:       KOO23152.1  [L=207]
Description: hypothetical protein Ctob_001880 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (207 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       406  (0.0226449); expected 358.6 (0.02)
Passed bias filter:                      358  (0.0199677); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.25s 00:00:00.63 Elapsed: 00:00:00.38
# Mc/sec: 1626.54
//
Query:       KOO23153.1  [L=80]
Description: long-chain fatty acid transport protein 3-like protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (80 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       215  (0.0119917); expected 358.6 (0.02)
Passed bias filter:                      185  (0.0103185); expected 358.6 (0.02)
Passed Vit filter:                         9  (0.00050198); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.20s 00:00:00.52 Elapsed: 00:00:00.35
# Mc/sec: 681.09
//
Query:       KOO23154.1  [L=113]
Description: hypothetical protein Ctob_001882 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.7e-11   43.9   0.0    2.1e-11   43.6   0.0    1.1  1  CBM_20    Starch binding domain


Domain annotation for each model (and alignments):
>> CBM_20  Starch binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.6   0.0   1.2e-15   2.1e-11       2      71 ..       6      75 ..       5     100 .. 0.82

  Alignments for each domain:
  == domain 1  score: 43.6 bits;  conditional E-value: 1.2e-15
      CBM_20  2 vsVtFkvnattqlgesvyivGsiseLGnWnpkkavklsaseqtssyplWsttvslpagtkieYkyikkds 71
                v V+++v+a+t++g+ ++ivGs++ +G+W+++   +     ++ s + W+ ++ ++a+ ++eYk+ ++++
  KOO23154.1  6 VLVHLTVRAETSPGDALVIVGSTPHMGSWDASASQAKMRRVEDRSSNAWRCEFWVSANEELEYKVAIVRA 75
                77999**99*********************96555444444459********************999765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (113 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       316  (0.0176251); expected 358.6 (0.02)
Passed bias filter:                      261  (0.0145574); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.34u 0.24s 00:00:00.58 Elapsed: 00:00:00.38
# Mc/sec: 897.93
//
Query:       KOO23155.1  [L=209]
Description: hypothetical protein Ctob_001870 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.1e-06   27.2   2.6    6.1e-06   26.2   2.6    1.5  1  WW        WW domain


Domain annotation for each model (and alignments):
>> WW  WW domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.2   2.6   3.4e-10   6.1e-06       5      31 .]      11      36 ..       9      36 .. 0.98

  Alignments for each domain:
  == domain 1  score: 26.2 bits;  conditional E-value: 3.4e-10
                EEEEE-TTTT-EEEEETTT--EESS-- CS
          WW  5 WeeqwdpdsGrvYYyNheTgetqWekP 31
                W+ +++p+ G+++Y+N+ T++  W +P
  KOO23155.1 11 WQVRTTPE-GKKFYFNKVTKKRVWKRP 36
                ********.****************99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (209 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       603  (0.0336327); expected 358.6 (0.02)
Passed bias filter:                      488  (0.0272185); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.22s 00:00:00.62 Elapsed: 00:00:00.37
# Mc/sec: 1701.95
//
Query:       KOO23156.1  [L=313]
Description: hypothetical protein Ctob_001871 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.6e-16   57.8   0.0    3.4e-12   45.9   0.0    2.2  2  ubiquitin  Ubiquitin family
    5.1e-07   29.4   0.0    9.6e-05   22.1   0.0    2.4  2  Rad60-SLD  Ubiquitin-2 like Rad60 SUMO-like
     0.0063   17.2   0.1        6.6    7.5   0.0    2.7  2  YukD       WXG100 protein secretion system (Wss), protein Yuk


Domain annotation for each model (and alignments):
>> ubiquitin  Ubiquitin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.9   0.0    0.0001      0.61      38      69 ..     181     212 ..     169     215 .. 0.84
   2 !   45.9   0.0   5.8e-16   3.4e-12       8      71 ..     232     295 ..     224     296 .. 0.91

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.0001
                 GEEEEETTEEE-TTSBHGGHTTSTTEEEEEEE CS
   ubiquitin  38 qqrLiysGkvLedertleeygiqdgstlhlvl 69 
                   rL ++   L+d +tl+++g ++gs++++++
  KOO23156.1 181 TTRLRLDSTWLHDLQTLRDVGCREGSVVMVAV 212
                 5688888889*******************987 PP

  == domain 2  score: 45.9 bits;  conditional E-value: 5.8e-16
                 SEEEEEEEETTSBHHHHHHHHHHHHTSSGGGEEEEETTEEE-TTSBHGGHTTSTTEEEEEEESS CS
   ubiquitin   8 gkkitleveesdtveelKekiaekegipaeqqrLiysGkvLedertleeygiqdgstlhlvlrl 71 
                 g + t+ + + d ++ l+++ +++ g+p+++q Li++G+vL+  +t+e +g+ dgst+hl++ +
  KOO23156.1 232 GDTATIFIRPADGMLALMQAAQDTLGVPVDCQTLIFKGRVLSAAETVEACGLVDGSTVHLAIGK 295
                 6688999*****************************************************9865 PP

>> Rad60-SLD  Ubiquitin-2 like Rad60 SUMO-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.0   0.0    0.0036        22      40      70 ..     180     210 ..     145     212 .. 0.85
   2 !   22.1   0.0   1.6e-08   9.6e-05       7      72 .]     229     293 ..     224     293 .. 0.93

  Alignments for each domain:
  == domain 1  score: 5.0 bits;  conditional E-value: 0.0036
                 TT-EEEETTEE--TTSBGGGSS--TTEEEEE CS
   Rad60-SLD  40 qkvrLiFDGeeLdpnstvedldiedgdtidv 70 
                  + rL  D ++L++ +t+ d ++++g+++ v
  KOO23156.1 180 PTTRLRLDSTWLHDLQTLRDVGCREGSVVMV 210
                 5789999*******************99876 PP

  == domain 2  score: 22.1 bits;  conditional E-value: 1.6e-08
                 ESSS--EEEEEETTSBHHHHHHHHHHHHT----TT-EEEETTEE--TTSBGGGSS--TTEEEEEEX CS
   Rad60-SLD   7 gkdgkevkikVkptttvskLieayrkkkgipeeqkvrLiFDGeeLdpnstvedldiedgdtidvvi 72 
                 +k g++ +i ++p      L++a ++  g+p+ + ++LiF+G+ L+  +tve  ++ dg+t+++ i
  KOO23156.1 229 AKAGDTATIFIRPADGMLALMQAAQDTLGVPV-DCQTLIFKGRVLSAAETVEACGLVDGSTVHLAI 293
                 467889999999999999**************.999**************************9876 PP

>> YukD  WXG100 protein secretion system (Wss), protein YukD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.5   0.0    0.0011       6.6      17      75 ..     148     209 ..     145     210 .. 0.78
   2 !    6.9   0.0    0.0017        10      53      76 .]     268     291 ..     245     291 .. 0.87

  Alignments for each domain:
  == domain 1  score: 7.5 bits;  conditional E-value: 0.0011
                 EETTSBTTHHHHHHHHHS-.........--S---TT-EEEEGGGEEEETTSBCGGGT--TT-EEE CS
        YukD  17 LPadvpvaellpalvrllg......epddeagrpggwsLarvggapLsgdrtLaeagVrDGdlLv 75 
                 ++ad  + +l +++vr+ g      +   +a++++++   r++ + L + +tL ++g r G++ +
  KOO23156.1 148 ISADASIGQLFDEFVRASGanhlvaGRRTQAPPTTRL---RLDSTWLHDLQTLRDVGCREGSVVM 209
                 7899**************9999765434444444444...56778999*************9876 PP

  == domain 2  score: 6.9 bits;  conditional E-value: 0.0017
                 GGEEEETTSBCGGGT--TT-EEEE CS
        YukD  53 ggapLsgdrtLaeagVrDGdlLvL 76 
                 +g++Ls  +t +++g +DG++ +L
  KOO23156.1 268 KGRVLSAAETVEACGLVDGSTVHL 291
                 579****************99876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (313 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       420  (0.0234257); expected 358.6 (0.02)
Passed bias filter:                      354  (0.0197445); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.45u 0.20s 00:00:00.65 Elapsed: 00:00:00.38
# Mc/sec: 2460.03
//
Query:       KOO23157.1  [L=273]
Description: hypothetical protein Ctob_001879 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (273 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       592  (0.0330191); expected 358.6 (0.02)
Passed bias filter:                      118  (0.00658152); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.42u 0.24s 00:00:00.65 Elapsed: 00:00:00.41
# Mc/sec: 1989.23
//
Query:       KOO23158.1  [L=1479]
Description: protein nlrc3, partial [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.9e-10   41.2   8.2    2.7e-05   24.7   0.7    4.1  4  Ank_2     Ankyrin repeats (3 copies)
    1.9e-08   33.7  20.4       0.41   10.8   0.1    8.4  9  LRR_6     Leucine Rich repeat
    2.1e-07   30.7   3.8       0.24   12.0   0.0    5.3  5  Ank_3     Ankyrin repeat
    9.6e-07   29.2   2.5       0.16   12.6   0.0    4.0  3  Ank_4     Ankyrin repeats (many copies)
     0.0016   18.5   0.0     0.0052   16.9   0.0    1.8  1  SPRY      SPRY domain
  ------ inclusion threshold ------
      0.022   15.2   6.4      0.028   14.9   0.0    4.0  5  Ank       Ankyrin repeat
       0.12   12.7   8.3       0.24   11.8   0.1    4.4  5  Ank_5     Ankyrin repeats (many copies)
       0.16   12.7   1.4         78    4.4   0.6    4.2  3  LRR_1     Leucine Rich Repeat
       0.17   12.4   0.1         26    5.4   0.0    3.5  3  LRR_4     Leucine Rich repeats (2 copies)


Domain annotation for each model (and alignments):
>> Ank_2  Ankyrin repeats (3 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.0       4.6   9.2e+03      56      75 ..     423     442 ..     387     451 .. 0.76
   2 !   24.7   0.7   1.4e-08   2.7e-05      27      81 ..     573     656 ..     547     658 .. 0.67
   3 !   18.1   0.2   1.5e-06     0.003       4      74 ..     955    1038 ..     943    1044 .. 0.78
   4 ?   -1.7   0.0       2.4   4.7e+03      48      65 ..    1124    1141 ..    1080    1152 .. 0.52

  Alignments for each domain:
  == domain 1  score: -2.7 bits;  conditional E-value: 4.6
       Ank_2  56 pLhyAarsghleivklLlek 75 
                  Lh A   ++l  v++Ll+ 
  KOO23158.1 423 SLHRAFDGTSLTDVEFLLDE 442
                 58888877788999999853 PP

  == domain 2  score: 24.7 bits;  conditional E-value: 1.4e-08
       Ank_2  27 ktaLhyAakngnleivklLle..h........................ad...ndgrtpLhyAarsghleivklLlekgadinl 81 
                  t Lh Aa++gn+ ++ l l+  +                        +d   + g+t+L++Aa  g++e+v lLle+ga+  +
  KOO23158.1 573 GTLLHEAAREGNVAVLCLALDacKdmaaesesnaakgmagdaaikvaaVDapdDRGQTALYVAAVAGNEEVVMLLLENGANAGA 656
                 5889999999976655555554413444445555556665556555552244488************************98765 PP

  == domain 3  score: 18.1 bits;  conditional E-value: 1.5e-06
       Ank_2    4 AakngnlelvklLl.eg....adpn.kngktaLhyAakngnleivklLleh.......adndgrtpLhyAarsghleivklLle 74  
                  Aa +g+  + + Ll +     ad++ +  +t Lh++a+ +++ +++  l+h        d +g  p  +Aa +++ +++  Ll+
  KOO23158.1  955 AAASGHITVARALLeSDasvwADVErEHRWTLLHASARWNDKALMEEALKHapgaesmRDAEGLFPVELAALHQQKNVLAALLK 1038
                  555799999999995223333444443889********999999999999889877755588999******9999999999995 PP

  == domain 4  score: -1.7 bits;  conditional E-value: 2.4
       Ank_2   48 h.adndgrtpLhyAarsgh 65  
                  + + ++g+ ++++A++ g+
  KOO23158.1 1124 NtLGDEGWGAIFAAIC-GN 1141
                  2233556666666663.43 PP

>> LRR_6  Leucine Rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.8   0.1    0.0002      0.41       4      19 ..    1115    1130 ..    1113    1135 .. 0.90
   2 ?   -1.7   0.0       2.2   4.4e+03      14      24 .]    1155    1165 ..    1155    1165 .. 0.91
   3 ?    5.4   0.0     0.011        22       5      24 .]    1176    1195 ..    1176    1195 .. 0.93
   4 !   10.1   0.0   0.00036      0.72       5      22 ..    1220    1237 ..    1219    1239 .. 0.88
   5 ?    4.2   0.3     0.027        55       5      16 ..    1248    1259 ..    1248    1261 .. 0.87
   6 ?    3.5   0.0     0.046        92       5      24 .]    1290    1309 ..    1289    1309 .. 0.88
   7 ?   -3.0   0.0       5.6   1.1e+04       4      12 ..    1333    1341 ..    1332    1341 .. 0.81
   8 !    6.6   0.3    0.0046       9.1       5      16 ..    1365    1376 ..    1364    1378 .. 0.89
   9 ?   -0.9   0.1       1.2   2.4e+03      12      24 .]    1415    1427 ..    1412    1427 .. 0.88

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.0002
       LRR_6    4 hLteLdLsgNdIgDeG 19  
                  +Lt+++L +N +gDeG
  KOO23158.1 1115 TLTSVELGDNTLGDEG 1130
                  8**************9 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 2.2
       LRR_6   14 dIgDeGaeaLa 24  
                  +Ig +G++ +a
  KOO23158.1 1155 NIGPAGVKLIA 1165
                  79******997 PP

  == domain 3  score: 5.4 bits;  conditional E-value: 0.011
       LRR_6    5 LteLdLsgNdIgDeGaeaLa 24  
                  Lt +d++ N+I ++Ga  La
  KOO23158.1 1176 LTRVDVRKNNIVGDGAAQLA 1195
                  89********9999999887 PP

  == domain 4  score: 10.1 bits;  conditional E-value: 0.00036
       LRR_6    5 LteLdLsgNdIgDeGaea 22  
                   teLdL+gN++g eG++ 
  KOO23158.1 1220 FTELDLKGNGVGVEGGMV 1237
                  69*************986 PP

  == domain 5  score: 4.2 bits;  conditional E-value: 0.027
       LRR_6    5 LteLdLsgNdIg 16  
                  Lt+LdLs N + 
  KOO23158.1 1248 LTSLDLSNNALC 1259
                  9********975 PP

  == domain 6  score: 3.5 bits;  conditional E-value: 0.046
       LRR_6    5 LteLdLsgNdIgDeGaeaLa 24  
                  Lt +d++ N+I ++ a  La
  KOO23158.1 1290 LTRVDVRKNNIAGDSAARLA 1309
                  89*********999887665 PP

  == domain 7  score: -3.0 bits;  conditional E-value: 5.6
       LRR_6    4 hLteLdLsg 12  
                  + teLdL+g
  KOO23158.1 1333 SFTELDLKG 1341
                  689****75 PP

  == domain 8  score: 6.6 bits;  conditional E-value: 0.0046
       LRR_6    5 LteLdLsgNdIg 16  
                  Lt+L+Ls+N++ 
  KOO23158.1 1365 LTSLNLSFNQLC 1376
                  9*********75 PP

  == domain 9  score: -0.9 bits;  conditional E-value: 1.2
       LRR_6   12 gNdIgDeGaeaLa 24  
                  gN+++ e a+ La
  KOO23158.1 1415 GNQLDAESAKMLA 1427
                  8*********998 PP

>> Ank_3  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.5   0.1    0.0036       7.2       4      23 ..     574     593 ..     572     597 .. 0.86
   2 !   12.0   0.0   0.00012      0.24       2      29 ..     628     654 ..     627     656 .. 0.85
   3 ?    5.1   0.0     0.022        43       2      28 ..     948     973 ..     947     976 .. 0.84
   4 ?    2.6   0.0      0.14   2.8e+02       2      24 ..     983    1005 ..     982    1010 .. 0.84
   5 ?   -3.8   0.0         9   1.8e+04       8      23 ..    1023    1038 ..    1020    1040 .. 0.83

  Alignments for each domain:
  == domain 1  score: 7.5 bits;  conditional E-value: 0.0036
       Ank_3   4 tpLhlAarsgnleivkfLle 23 
                 t+Lh+Aar gn++++++ l+
  KOO23158.1 574 TLLHEAAREGNVAVLCLALD 593
                 9***********98877766 PP

  == domain 2  score: 12.0 bits;  conditional E-value: 0.00012
       Ank_3   2 GetpLhlAarsgnleivkfLlenkgadv 29 
                 G+t+L++Aa +gn e+v +Lle +ga+ 
  KOO23158.1 628 GQTALYVAAVAGNEEVVMLLLE-NGANA 654
                 9**************7777777.89985 PP

  == domain 3  score: 5.1 bits;  conditional E-value: 0.022
       Ank_3   2 GetpLhlAarsgnleivkfLlenkgad 28 
                 G+ p   Aa sg+++++++Lle   a 
  KOO23158.1 948 GNAPALAAAASGHITVARALLE-SDAS 973
                 6778889**************9.5665 PP

  == domain 4  score: 2.6 bits;  conditional E-value: 0.14
       Ank_3    2 GetpLhlAarsgnleivkfLlen 24  
                   +t+Lh  ar ++ ++++  l++
  KOO23158.1  983 RWTLLHASARWNDKALMEEALKH 1005
                  69************999988883 PP

  == domain 5  score: -3.8 bits;  conditional E-value: 9
       Ank_3    8 lAarsgnleivkfLle 23  
                  lAa+++  +++ +Ll+
  KOO23158.1 1023 LAALHQQKNVLAALLK 1038
                  7999999999999987 PP

>> Ank_4  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.9   0.1     0.089   1.8e+02      35      54 ..     572     591 ..     560     592 .. 0.85
   2 !   12.6   0.0     8e-05      0.16       3      29 ..     630     656 ..     618     669 .. 0.89
   3 !   10.9   0.1   0.00028      0.56       6      49 ..     953     997 ..     948    1003 .. 0.79

  Alignments for each domain:
  == domain 1  score: 2.9 bits;  conditional E-value: 0.089
       Ank_4  35 GetalhiAakrgnveilklL 54 
                 + t+lh Aa+ gnv +l l 
  KOO23158.1 572 HGTLLHEAAREGNVAVLCLA 591
                 6799**********999876 PP

  == domain 2  score: 12.6 bits;  conditional E-value: 8e-05
       Ank_4   3 taLhyaaisgrlelvrlLlekgadina 29 
                 taL  aa +g++e+v+lLle+ga+  a
  KOO23158.1 630 TALYVAAVAGNEEVVMLLLENGANAGA 656
                 78999999*************998555 PP

  == domain 3  score: 10.9 bits;  conditional E-value: 0.00028
       Ank_4   6 hyaaisgrlelvrlLlekgadina.qdnrs.GetalhiAakrgnve 49 
                  +aa+sg++ ++r Lle++a++ a +  r+  +t+lh  a+++++ 
  KOO23158.1 953 LAAAASGHITVARALLESDASVWAdV-EREhRWTLLHASARWNDKA 997
                 58999*************99955503.455466********99875 PP

>> SPRY  SPRY domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   0.0   2.6e-06    0.0052      17     110 ..     767     912 ..     760     922 .. 0.64

  Alignments for each domain:
  == domain 1  score: 16.9 bits;  conditional E-value: 2.6e-06
                 EEEE........................EETTSSSSSTSSS.......TSSTTEEEEETETTEEE............EETESCEEEESSSS........ CS
        SPRY  17 svGl........................ateqtdlsdksge.......gddrgswglcgdngtrt............saeqskaygkqpar........ 64 
                 svG+                        + e++   +k++e       g d  s+g+++ +gt++            s                     
  KOO23158.1 767 SVGWsaddavvdafippgvegdliaiatCNEDVY--GKKMEavrgvtlGRDTSSIGFES-RGTIYcnvpfeiswvhgS------------Ssffdsmsv 850
                 6666666666666666666666666644455555..45555557777777777777776.666664444433322220............122233334 PP

                 ...............TTSEEEEEEETTTTEEEEEETT.EEEEEEEESTTTSSEEEEEEE..ST CS
        SPRY  65 ...............egdviGvalDleegelsFtkng.knlgvaFrnvrgaelfPvvslg.ng 110
                                +gd  Gva+D+  +  +F  n  ++++v+  ++++  +fP+ s + +g
  KOO23158.1 851 sgmagmapsalqkwsRGDKLGVAIDMTRHVAFFAINDgEWVEVPLPKEEK-RFFPALSGRfSG 912
                 455555555555555*******************99879*******8887.9***98876555 PP

>> Ank  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.5   0.0      0.48   9.5e+02       4      17 ..     574     587 ..     574     598 .. 0.77
   2 ?   14.9   0.0   1.4e-05     0.028       2      26 ..     628     653 ..     627     658 .. 0.92
   3 ?   -3.8   0.1         9   1.8e+04       9      26 ..     956     973 ..     953     976 .. 0.68
   4 ?   -1.0   0.0       1.5     3e+03       3      14 ..     984     995 ..     983    1041 .. 0.57
   5 ?   -3.7   0.1         9   1.8e+04       5      26 ..    1397    1416 ..    1394    1421 .. 0.66

  Alignments for each domain:
  == domain 1  score: 0.5 bits;  conditional E-value: 0.48
                 BHHHHHHHHTTHHH CS
         Ank   4 TPLHlAatngkkri 17 
                 T LH Aa++g++ +
  KOO23158.1 574 TLLHEAAREGNVAV 587
                 89*****9998544 PP

  == domain 2  score: 14.9 bits;  conditional E-value: 1.4e-05
                 SBBHHHHHHHHTTHHHHHHHH.TTTS CS
         Ank   2 GnTPLHlAatngkkriiklLL.hGAn 26 
                 G T+L +Aa  g+++++ lLL +GAn
  KOO23158.1 628 GQTALYVAAVAGNEEVVMLLLeNGAN 653
                 99*******99**********99*99 PP

  == domain 3  score: -3.8 bits;  conditional E-value: 9
                 HHHHTTHHHHHHHH.TTTS CS
         Ank   9 AatngkkriiklLL.hGAn 26 
                 Aa  g+  ++++LL + A+
  KOO23158.1 956 AA-SGHITVARALLeSDAS 973
                 33.5777799999965576 PP

  == domain 4  score: -1.0 bits;  conditional E-value: 1.5
                 BBHHHHHHHHTT CS
         Ank   3 nTPLHlAatngk 14 
                 +T LH  a+ ++
  KOO23158.1 984 WTLLHASARWND 995
                 588887664433 PP

  == domain 5  score: -3.7 bits;  conditional E-value: 9
                  HHHHHHHHTTHHHHHHHHTTTS CS
         Ank    5 PLHlAatngkkriiklLLhGAn 26  
                  +   A +++++  + +LL G n
  KOO23158.1 1397 AIADAMRINGALTVTNLL-G-N 1416
                  555556888888999999.7.3 PP

>> Ank_5  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.0       2.8   5.6e+03      20      37 ..     424     441 ..     422     450 .. 0.82
   2 ?   -0.9   0.2       1.2   2.3e+03      15      36 ..     572     592 ..     563     596 .. 0.85
   3 ?   11.8   0.1   0.00012      0.24       7      45 ..     619     657 ..     616     659 .. 0.93
   4 ?   -1.9   0.1       2.4   4.8e+03      23      41 ..     955     971 ..     952     974 .. 0.75
   5 ?    2.3   0.0      0.11   2.2e+02       8      56 .]     977    1024 ..     975    1024 .. 0.82

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 2.8
       Ank_5  20 LhvAakygaadvvrlLla 37 
                 Lh A  + +++ v++Ll+
  KOO23158.1 424 LHRAFDGTSLTDVEFLLD 441
                 99999999*********2 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 1.2
       Ank_5  15 ggntpLhvAakygaadvvrlLl 36 
                 +g t Lh Aa+ g+  v++l l
  KOO23158.1 572 HG-TLLHEAAREGNVAVLCLAL 592
                 45.99*********99999877 PP

  == domain 3  score: 11.8 bits;  conditional E-value: 0.00012
       Ank_5   7 advnrldgggntpLhvAakygaadvvrlLlargadlnlt 45 
                 a+v+++d +g+t+L vAa +g+ +vv lLl++ga+++++
  KOO23158.1 619 AAVDAPDDRGQTALYVAAVAGNEEVVMLLLENGANAGAR 657
                 57899*****************************99875 PP

  == domain 4  score: -1.9 bits;  conditional E-value: 2.4
       Ank_5  23 AakygaadvvrlLlargad 41 
                 Aa  g+ +v+r Ll  ++d
  KOO23158.1 955 AAASGHITVARALL--ESD 971
                 44469*********..555 PP

  == domain 5  score: 2.3 bits;  conditional E-value: 0.11
       Ank_5    8 dvnrldgggntpLhvAakygaadvvrlLl.argadlnltdsrGltaldlA 56  
                  dv r+ ++  t Lh +a+ +   ++++ l   + +  ++d++Gl +++lA
  KOO23158.1  977 DVEREHRW--TLLHASARWNDKALMEEALkHAPGAESMRDAEGLFPVELA 1024
                  56666666..999*999977777777777799****************98 PP

>> LRR_1  Leucine Rich Repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.0       2.6   5.3e+03       4      17 ..    1090    1103 ..    1089    1109 .. 0.74
   2 ?    3.1   0.0       0.1   2.1e+02       2      12 ..    1248    1258 ..    1247    1268 .. 0.86
   3 ?    4.4   0.6     0.039        78       2      17 ..    1365    1380 ..    1364    1385 .. 0.82

  Alignments for each domain:
  == domain 1  score: -1.1 bits;  conditional E-value: 2.6
       LRR_1    4 hLdLsnnpllglpp 17  
                  +L+L++++l   ++
  KOO23158.1 1090 ELNLRGQNLRTSGS 1103
                  7******9955554 PP

  == domain 2  score: 3.1 bits;  conditional E-value: 0.1
       LRR_1    2 LrhLdLsnnpl 12  
                  L++LdLsnn l
  KOO23158.1 1248 LTSLDLSNNAL 1258
                  99*******87 PP

  == domain 3  score: 4.4 bits;  conditional E-value: 0.039
       LRR_1    2 LrhLdLsnnpllglpp 17  
                  L++L+Ls n+l gl+ 
  KOO23158.1 1365 LTSLNLSFNQLCGLEL 1380
                  89*********88765 PP

>> LRR_4  Leucine Rich repeats (2 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.0       7.4   1.5e+04       3      15 ..    1116    1128 ..    1115    1131 .. 0.75
   2 ?    5.4   0.0     0.013        26       5      33 ..    1222    1256 ..    1221    1260 .. 0.53
   3 ?    2.4   0.1      0.12   2.3e+02       3      13 ..    1365    1375 ..    1362    1381 .. 0.62

  Alignments for each domain:
  == domain 1  score: -3.3 bits;  conditional E-value: 7.4
                  --EEE--SS---E CS
       LRR_4    3 LevLdLsnNqltd 15  
                  L+++ L++N l d
  KOO23158.1 1116 LTSVELGDNTLGD 1128
                  7888888888876 PP

  == domain 2  score: 5.4 bits;  conditional E-value: 0.013
                  EEE--SS---E-S-.......HHH-TT--EEE-.-S CS
       LRR_4    5 vLdLsnNqltdipl.......leklpnLkeLdLsgN 33  
                  +LdL +N +   ++       +  +  L++LdLs+N
  KOO23158.1 1222 ELDLKGNGVGVEGGmvvagliP-AMGALTSLDLSNN 1256
                  5666666666444455433222.2555777777555 PP

  == domain 3  score: 2.4 bits;  conditional E-value: 0.12
                  --EEE--SS-- CS
       LRR_4    3 LevLdLsnNql 13  
                  L++L+Ls Nql
  KOO23158.1 1365 LTSLNLSFNQL 1375
                  55555555554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1479 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       473  (0.0263818); expected 358.6 (0.02)
Passed bias filter:                      370  (0.020637); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.83u 0.26s 00:00:01.08 Elapsed: 00:00:00.43
# Mc/sec: 10316.78
//
Query:       KOO23159.1  [L=198]
Description: hypothetical protein Ctob_003322 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.9e-19   68.0   6.3    9.8e-10   38.2   0.3    3.4  3  STI1      STI1 domain
  ------ inclusion threshold ------
      0.091   12.5   0.1       0.12   12.2   0.1    1.2  1  DUF3431   Protein of unknown function (DUF3431)


Domain annotation for each model (and alignments):
>> STI1  STI1 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.0      0.25   2.2e+03       2      10 ..      16      24 ..      13      26 .. 0.59
   2 !   31.2   0.4   1.8e-11   1.6e-07       2      54 ..      43      99 ..      42     100 .. 0.87
   3 !   38.2   0.3   1.1e-13   9.8e-10       2      53 ..     133     186 ..     132     187 .. 0.97

  Alignments for each domain:
  == domain 1  score: -1.3 bits;  conditional E-value: 0.25
        STI1  2 pelfaklaa 10
                pe++ak++a
  KOO23159.1 16 PEVQAKMEA 24
                445555544 PP

  == domain 2  score: 31.2 bits;  conditional E-value: 1.8e-11
        STI1  2 pelfaklaanPetrellsDPefvakleeiqsNPqalqqymsD....primtvlsvLm 54
                pel++k+a+ P +r+ + DP  +  + e+q+NP+a++++  D    +++++++ + m
  KOO23159.1 43 PELMTKIAMSPILRKGFTDPRCQTAMGEMQANPAAAMKKYGDvpemKEFLQAFAKVM 99
                9***************************************88655556666666666 PP

  == domain 3  score: 38.2 bits;  conditional E-value: 1.1e-13
        STI1   2 pelfaklaanPetrellsDPefvakleeiqsNPq.alqqym.sDprimtvlsvL 53 
                 +e+++k++a+Pe+r++++ P+ ++ + ++q++ +  +++ m +Dp+   +l++L
  KOO23159.1 133 QEVAEKAMADPEVRAIVAEPKIQQLIGRMQTGVSfEIEREMrNDPDLVRKLQKL 186
                 899*****************************999*****************98 PP

>> DUF3431  Protein of unknown function (DUF3431)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.1   1.3e-05      0.12      79     153 ..      39     122 ..      13     145 .. 0.63

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 1.3e-05
     DUF3431  79 dydnaallrrlrleavqeeGYvnlrckwepgCpaelkplekee......eekkeeealaeafaelf....eeeevpevvaapcCa 153
                    + +l++++ ++ + ++G+++ rc++ +g +++ +p+   +      e k+  +a+a+++a+ f    e++e  ++++++ +a
  KOO23159.1  39 GWMTPELMTKIAMSPILRKGFTDPRCQTAMG-EMQANPAAAMKkygdvpEMKEFLQAFAKVMADHFgklaEKQEAEKKIQEQQAA 122
                 556678999********************99.44555555222354444222222244444444444333666777777766554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (198 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1745  (0.0973284); expected 358.6 (0.02)
Passed bias filter:                      827  (0.0461264); expected 358.6 (0.02)
Passed Vit filter:                        71  (0.00396006); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.47u 0.27s 00:00:00.74 Elapsed: 00:00:00.42
# Mc/sec: 1404.89
//
Query:       KOO23160.1  [L=191]
Description: yrb1p [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    8.9e-45  151.9   4.9    1.4e-44  151.3   4.9    1.3  1  Ran_BP1   RanBP1 domain
  ------ inclusion threshold ------
      0.046   13.7   1.1       0.23   11.4   1.1    1.9  1  WH1       WH1 domain


Domain annotation for each model (and alignments):
>> Ran_BP1  RanBP1 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  151.3   4.9   1.5e-48   1.4e-44       3     120 ..      58     180 ..      55     182 .. 0.94

  Alignments for each domain:
  == domain 1  score: 151.3 bits;  conditional E-value: 1.5e-48
                 --SSTTEEEEEEEEEEEEEEETTT.....TEEEEEEEEEEEEEEETTTTEEEEEEEETTTTEEEEEEEE-TTS-EEESTTESSEEEEEEEE-TTSSSEE CS
     Ran_BP1   3 ksgEEdEevlfkqraKLfrfdaek.....kewkeRGvGdiKilkkkddekvRllmRrdqvlkvcaNhvitkemklkplagsdrslvwtaadaadeeakl 96 
                 +++EEdEev +k+raKLfr+++++     k wkeRG+Gd+K+lk+k+++kvRllmRr++++k+caN  + ++++lk +agsdrs+vwt+ d+++e+++ 
  KOO23160.1  58 STMEEDEEVTYKVRAKLFRWESDSwekevKMWKERGTGDVKFLKHKETGKVRLLMRREKTMKICANFAVMPSIDLKENAGSDRSWVWTCIDFSEEKEER 156
                 69*****************976544444499******************************************************************** PP

                 EEEEEEESSHHHHHHHHHHHHHHH CS
     Ran_BP1  97 eqlaikfkkkeeadefkkkfeeak 120
                   lai+f + e+a++fk+ feea+
  KOO23160.1 157 SLLAIRFANSENAKKFKEVFEEAN 180
                 **********************96 PP

>> WH1  WH1 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   1.1   2.6e-05      0.23      24     110 ..      84     179 ..      65     180 .. 0.74

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 2.6e-05
                 TTTCEEEECECEEEEEEEEETTTTEEEEEEEETTT-SEEEEEEE-SS---B-SSSSEEEE..........ESSSSEEEEEESSHHHHHHHHHHHHHH CS
         WH1  24 akketWikakhagavslvkdstqnsyflrlvklqdakvvieqeiyknleynqarqkfhtf..........ederavvGLnFaseeeakkFakkvqea 110
                 ++ ++W++ + +g v++ k++     +l ++  +  k+  + ++++ +  +++      +          ++er   ++ Fa+ e+akkF + ++ea
  KOO23160.1  84 KEVKMWKE-RGTGDVKFLKHKETGKVRLLMRREKTMKICANFAVMPSIDLKENAGSDRSWvwtcidfseeKEERSLLAIRFANSENAKKFKEVFEEA 179
                 45578999.99*******99999999999999889999999999999988776554333322222222215566799**************999875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (191 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       742  (0.0413855); expected 358.6 (0.02)
Passed bias filter:                      368  (0.0205254); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.40u 0.23s 00:00:00.63 Elapsed: 00:00:00.39
# Mc/sec: 1478.80
//
Query:       KOO23161.1  [L=315]
Description: tricarboxylate transport mitochondrial [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.4e-52  175.6   3.1    7.1e-17   61.1   0.1    3.1  3  Mito_carr        Mitochondrial carrier protein
  ------ inclusion threshold ------
      0.033   12.9   0.6       0.16   10.6   0.1    2.3  3  Ammonium_transp  Ammonium Transporter Family
      0.072   13.6   0.0        0.2   12.2   0.0    1.7  1  VirionAssem_T7   Bacteriophage T7 virion assembly protein


Domain annotation for each model (and alignments):
>> Mito_carr  Mitochondrial carrier protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.1   0.1   1.2e-20   7.1e-17       4      95 ..      10      96 ..       7      98 .. 0.95
   2 !   55.8   0.1   5.5e-19   3.3e-15       7      89 ..     107     190 ..     103     197 .. 0.92
   3 !   58.6   0.1   7.4e-20   4.4e-16       4      95 ..     197     284 ..     194     286 .. 0.90

  Alignments for each domain:
  == domain 1  score: 61.1 bits;  conditional E-value: 1.2e-20
                HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSTTTSCSSHHHHHHHHHHHHHHHGGGTTHHHHHHHHHHHHHHHHHHHHHHHHHHCT CS
   Mito_carr  4 svlkellaGglagavatlvttPldvvKtrlqtqkksskksksaaildvlkkiykeeGlrglyrGllpnllrvapasalkfvlyetlkrlllk 95
                ++ k ++aGg++ga++ ++t+Pl++ Kt  q++k+s+       +++v++ ++k++G +g+yrGl+  +   +p++al+f+++e   ++l++
  KOO23161.1 10 HAGKAIVAGGISGAIEICCTYPLEYTKTVAQLDKGSGGG-----AMKVVRDTLKTHGPLGFYRGLSSMVYFATPKAALRFSAFEAASDMLKT 96
                667889******************************999.....9*****************************************999976 PP

  == domain 2  score: 55.8 bits;  conditional E-value: 5.5e-19
                 HHHHHHHHHHHHHHH.HHHHHHHHHHHHHHCCCSSTTTSCSSHHHHHHHHHHHHHHHGGGTTHHHHHHHHHHHHHHHHHHHHHH CS
   Mito_carr   7 kellaGglagavatl.vttPldvvKtrlqtqkksskksksaaildvlkkiykeeGlrglyrGllpnllrvapasalkfvlyetl 89 
                 + ++aG++ag+++++ v tP +++K+rl  ++ +s++ +++++++ +++++keeG+ g y G+ p++l+va a++ +f++++++
  KOO23161.1 107 NGFIAGLVAGTAEAIvVSTPQETIKIRLIDDQFKSETPRFKGFFHGVYTLIKEEGFFGIYHGVAPTVLKVATAQGTRFGVFNVI 190
                 679*********6651569************************************************************99876 PP

  == domain 3  score: 58.6 bits;  conditional E-value: 7.4e-20
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSTTTSCSSHHHHHHHHHHHHHHHGGGTTHHHHHHHHHHHHHHHHHHHHHHHHHHCT CS
   Mito_carr   4 svlkellaGglagavatlvttPldvvKtrlqtqkksskksksaaildvlkkiykeeGlrglyrGllpnllrvapasalkfvlyetlkrlllk 95 
                 ++++  ++G++ag v++l+ + ldvvK r+q   + + +s     l++ ++++ +eG +++y+G++p+l rv  + a++++ly  + ++l k
  KOO23161.1 197 TPVSVAACGAFAGGVSVLIFQGLDVVKSRMQGLDGAKYAS----SLHCAREMLVNEGWLSFYKGVGPRLSRVCCEVAITMTLYAEVVKVLDK 284
                 5677889************************877775543....8**************************************999998866 PP

>> Ammonium_transp  Ammonium Transporter Family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.1   2.7e-05      0.16     243     275 ..      95     126 ..      68     132 .. 0.78
   2 ?   -1.6   0.0      0.14   8.1e+02     276     292 ..     200     216 ..     175     239 .. 0.58
   3 ?   -2.0   0.0      0.18   1.1e+03     203     233 ..     249     279 ..     244     292 .. 0.84

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 2.7e-05
                      HHHCSS-BHHHHHHHHHHHHHHHTTTTTTS-HH CS
  Ammonium_transp 243 rlkegkinvlglanGilAGlVAiTaacavvepw 275
                      ++++gk+ ++g +nG +AGlVA Ta + vv++ 
       KOO23161.1  95 KTSDGKP-MFGKVNGFIAGLVAGTAEAIVVSTP 126
                      4455776.88999**************999865 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 0.14
                      HHHHHHHHHHHHHHHHH CS
  Ammonium_transp 276 gAliiGlvAgvlsvlgv 292
                      +  ++G+ Ag +svl +
       KOO23161.1 200 SVAACGAFAGGVSVLIF 216
                      33334444444443333 PP

  == domain 3  score: -2.0 bits;  conditional E-value: 0.18
                      HHHHHHHGGGSSSSHHHHH.HHHHHHHHHHH CS
  Ammonium_transp 203 gWfgFNaGsaltankrararaavtTllAaaa 233
                      gW++F  G+   ++ ++ ++a+  Tl+A ++
       KOO23161.1 249 GWLSFYKGVGPRLSRVCCEVAITMTLYAEVV 279
                      9999999999999999999899999999876 PP

>> VirionAssem_T7  Bacteriophage T7 virion assembly protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   3.4e-05       0.2      27      57 ..     103     133 ..      90     143 .. 0.83

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 3.4e-05
  VirionAssem_T7  27 vkqvagglaglaggtgeaqmvevpqaaaqiv 57 
                       +v g +agl  gt ea +v  pq + +i 
      KOO23161.1 103 FGKVNGFIAGLVAGTAEAIVVSTPQETIKIR 133
                     46899********************998875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (315 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       378  (0.0210832); expected 358.6 (0.02)
Passed bias filter:                      328  (0.0182944); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.47u 0.23s 00:00:00.70 Elapsed: 00:00:00.41
# Mc/sec: 2326.94
//
Query:       KOO23162.1  [L=2173]
Description: acetyl carboxylase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   4.4e-144  480.8   0.0     3e-143  478.1   0.0    2.0  1  Carboxyl_trans   Carboxyl transferase domain
    1.7e-77  261.3   0.0    1.2e-76  258.6   0.0    2.1  1  ACC_central      Acetyl-CoA carboxylase, central region
    8.5e-47  159.4   0.0    1.8e-46  158.3   0.0    1.5  1  CPSase_L_D2      Carbamoyl-phosphate synthase L chain, ATP bi
    4.3e-24   85.2   0.0    1.2e-23   83.7   0.0    1.8  1  Biotin_carb_N    Biotin carboxylase, N-terminal domain
    9.1e-23   80.4   0.0      3e-22   78.7   0.0    2.0  1  Biotin_carb_C    Biotin carboxylase C-terminal domain
    9.1e-11   41.4   0.2    2.8e-10   39.9   0.2    1.9  1  Biotin_lipoyl    Biotin-requiring enzyme
    0.00034   20.7   0.0    0.00076   19.6   0.0    1.6  1  ATP-grasp_3      ATP-grasp domain
  ------ inclusion threshold ------
      0.011   15.6   0.0       0.16   11.8   0.0    2.6  2  Biotin_lipoyl_2  Biotin-lipoyl like
      0.016   14.8   0.0      0.033   13.7   0.0    1.5  1  Dala_Dala_lig_C  D-ala D-ala ligase C-terminus
       0.09   12.3   0.0       0.53    9.8   0.0    2.2  1  ATP-grasp        ATP-grasp domain
       0.21   11.5   0.4        4.8    7.1   0.1    2.5  2  GCV_H            Glycine cleavage H-protein


Domain annotation for each model (and alignments):
>> Carboxyl_trans  Carboxyl transferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  478.1   0.0  1.8e-146    3e-143       1     494 []    1549    2086 ..    1549    2086 .. 0.92

  Alignments for each domain:
  == domain 1  score: 478.1 bits;  conditional E-value: 1.8e-146
                      SSCTTCEEEEEEEEHTTSGGGEBEHHHHHHHHHHHHHHHHHT..EEEEEEEESBETTEEHHHHTTEEEEESSTTSGGGCEE...ECHHHHHHH CS
  Carboxyl_trans    1 kehprGkltareridllldpgsFgeledlffhrvtelgrkkklprdgvvtgsGaviGravevvaqdktvlggslgpakgek...llkaqeeai 90  
                      +e+p G+ +a+ ++d ++++gsFg +ed +f + ++++r+ +lpr  ++++sGa+iG a+e+++ +k++++++ ++a+g+k   +++a+  + 
      KOO23162.1 1549 PEYPDGRPLAIVANDCTVQSGSFGIQEDNYFDAFSKYARAGGLPRLHIACNSGARIGLAEELKPFFKVAWVDPRNEAAGFKylyMTPADAAK- 1640
                      69*******************************************************************************65444444444. PP

                      HH................TEEEEEEEEE-ES.SSGHHSSHHHHHHHHHHHHHHHHHHHCS-EEEEESSEEETHHHHHHHHTSEEEEETTEEEE CS
  Carboxyl_trans   91 ka................gepligindsgGa.egriqegveslrgsGkifgenskasgeIpqislvtgrcaGggaYlpalgdrvimveetski 166 
                                        ge+++++ d++G+ +g   +gve+lrgsG+i+ge+ska++e +++s+vtgr++G+gaYl +l++rvi++++ +++
      KOO23162.1 1641 -MggnsdttfhgelvnddGEERFKLIDIVGKqDG---LGVENLRGSGMIAGETSKAYDETFTLSYVTGRSVGIGAYLNRLAQRVIQMQQ-GPL 1728
                      .2569**************************666...****************************************************.*** PP

                      ESSTHHHHHHHHSSCC-SSCHHHHSHHHHTTTTSSSEEESSHHHHHHHHHHHHTTS-SSTTSGGSS----ECSSGSSSH..HCS-CTTTS--- CS
  Carboxyl_trans  167 fltGpdvikkvlgreevtseelgGatqhmtksGvahltaeddeealelirkllsylPkkasnnresaPivetadepdrdlieivPdnakkpyD 259 
                      +ltG+++++k+lg+e++ s++++G++q+m  +G+ah +a+dd++++e+i ++lsy+P  +  + +++P  +++d++drd i  +P+  ++pyD
      KOO23162.1 1729 ILTGYSALNKLLGKEVYVSQDQLGGPQIMLPNGIAHQLATDDQDGVEKILRWLSYVP--RTAFESQQPA-ASVDPVDRD-IVWTPP--NTPYD 1815
                      *********************************************************..4444466666.567*****7.777777..8**** PP

                      HHHHHHCEEC...........TTC-EEESTTSSTTEEEEEEEETTEEEEEEEE--S....................EEETTEE-HHHHHHHHH CS
  Carboxyl_trans  260 vreviarlvd...........egeFlEikegyAktvVvGfArlgGipvGvvAnetr....................veaGqvlfidsavKaar 321 
                      +r ++a++             +g+F E+++ ++k+v+vG+ArlgGip+Gv+A+etr                     +aGqv+f+dsa+K+a+
      KOO23162.1 1816 PRMMLAGAAGpdgifkpgffdQGSFTEYLASWGKSVIVGRARLGGIPMGVIAVETRltetiipadpanpasrqtnlAQAGQVWFPDSAYKTAQ 1908
                      ********9888********************************************************************************* PP

                      HHHHHHH.TT--EEEEE-BSEE--SHHHHHTTHHHHHHHHHHHHHT--S-EEEEE-T..EEEHHHHHTTTGGGSTTTTE..EETTT-EEESS- CS
  Carboxyl_trans  322 firlcda.enlPlviladvrGflvGqrqeyggilkhGaklvdalaeakvPkitvilr..kayGGayvvmdskingadlv..aawptariaVlg 409 
                      ++ +++a enlP++++a++rGf++G+r+++g++lk+Ga++vd+l+ +k+P++++i++  +++GGa+vv+d++in + +   + +p+  +  + 
      KOO23162.1 1909 ALADFNAaENLPVMLFANWRGFSGGTRDMFGEVLKFGAQIVDNLRVYKHPVFVYIPPngELRGGAWVVVDPTINAE-IDgdFRKPD-LLKTMH 1999
                      *************************************************************************999.434555433.345555 PP

                      HHHHHHHHSHHHHHHHHHHHHHHHHH......HHHHHHHHHHHHHHHHHHHHHHHHHTTSSHHHHHHTTSSSEEEHGGGHH.HHHHHHHHHH CS
  Carboxyl_trans  410 pegaveilfrkekaaaemerkdlaae......rkkklkeyeeellnpyvaaargfaDavidpsetraklvialelewkkar.klparkrrni 494 
                            i    e+aaa+               +++ + ++e +l++ yv+++ +faD++++p+++ ak+vi++ + wk+ar ++++r rr++
      KOO23162.1 2000 RLDSKLIQLDAELAAADSSE-----AlgdtkdIQAAIGAREAQLMPLYVQISHEFADLHDRPGRMLAKGVIRDIVPWKRARqYFYWRVRRRL 2086
                      55555555566655555333.....123334599*******************************************************985 PP

>> ACC_central  Acetyl-CoA carboxylase, central region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  258.6   0.0   7.1e-80   1.2e-76       1     721 [.     791    1441 ..     791    1450 .. 0.87

  Alignments for each domain:
  == domain 1  score: 258.6 bits;  conditional E-value: 7.1e-80
                   EESXCCCXXXXEBXXSXXXXXX-SS.STTSCHHHHHHHHCHHHHHHHHT-SHTTTCCHHHHHHHHHHTSTCHHHHHHHHHHCCCTTTS-HHHHHHH CS
  ACC_central    1 eLDDpskVkkaepFegqlpelgsptsvvgekphqrlaallsaleniLaGYdnqakiketlkeLievLrdpeLPllelqevlsalsgrlPakleksl 96  
                   +L Dps+Vkk   F+g+l  +   + v+g+   +r++++ ++le +++GY    + + +++ ++++L + +LP+ e+++  sal +++P +l++ +
   KOO23162.1  791 TLADPSRVKKIGAFSGTLEYATGEEMVTGSATLKRFRKAQKTLELVMDGYV--LDAEPAVQAMLSALASVSLPIEEIKDAASALGQKMPVELDAMM 884 
                   589***************87777777*************************..6799*************************************** PP

                   HHHH....HHHHHC..T..SS--HHHHHHHHHHHCTT-TTTTTTTTHHHHSHHHHHHHCCCTTCCHHHHHHCCCCCCCHHHHHHHHHT.ST-HHHH CS
  ACC_central   97 rkel....ekaasnitsvlaeFPakqlrkildsflaeltkkadrevlealvqplvqlverYrnGlkghelsvvlsLLeeYlevEklFqdgsreedv 188 
                   ++++    ++  + ++s  +     +lr ++++++++l + ++++ ++ +++p++  +++Y++Gl++++++v   LL++Y++vE+ F d s  +++
   KOO23162.1  885 QQVYaatlAEHVNGMDSTETATLVTKLRAVVEEYVKSLFE-SKQADMRITIAPVTAQIDKYAKGLRENAVEVTCALLSRYVNVESSFVDMS-TDQA 978 
                   *98843333333334444455566789999*******997.69999*****************************************9776.**** PP

                   HHHHHHH-STCHHHHHHHHHHHHTHHHHHHHHHHHHHHCH..CCCCHTC....CCCCCCHHHHHCCCT--STTTHHHHHHHHHHHHHHSSHHHHHH CS
  ACC_central  189 vlkLReknkddlakVvdivlShsqvskKnkLilalldelk..pekpsss....elakelrevLkkLasLesketskVaLkArevLiqaklPsleer 278 
                   v +L +++ +dl+kV++++++h+q++ +n L++++l +l+  pe    +           +v   L+++   e+++VaL+A +  + ++  +++e 
   KOO23162.1  979 VGALVKAYPKDLQKVYAMAFAHEQLKGRNLLVISMLRQLSgfPERF--GveplRTLPPALNVVVTLSQMPGAEYKEVALNAAKFGLMKAEKPFDEA 1072
                   ****************************************543322..24233444445566678999999*********9998555555568888 PP

                   HHHHHHHHHHHHSBSSTTSS-SS--HHHHHHHHT-SS-SHHHHCCCCCSSSHHHHHHHHHHHHHHHTTTSEEEEEEEEESS.STCEEEEEEE-T-- CS
  ACC_central  279 knqmesilkssvdesgygeskrepslevlkeLidsettvfDvLpsfFyhsdevvrlaalevYvrraYraYelksiqhheeeesplivewqFklpss 374 
                     +++++lks ++e                    s+  v  +L ++F +    v l a++v  +r Yr++++ s+++ ++  +++++e+++k  + 
   KOO23162.1 1073 VRELKAELKSGMEEAA-----------------VSRSVVTNALLALFGD--AEVGLTAMQVALKRWYRTFNIISMTTGSKA-GATTIEFKYKAAD- 1147
                   8889999977666654.................59999*********86..56999*********************9999.99*******9322. PP

                   -TCGCSSS--SSSSS-B--TT-EEESSTTTS--S-SSSS--EEEEEEEESSCCGHHHHHHCHHCTS-----------....-----------EEEE CS
  ACC_central  375 hseeksasssstsssesesskriasvsdlsslsskseeepkrtGvmvafksledleealdevleefeeskksesseekeeeeeesssseepinvln 470 
                    +            + ++++                   p+r+G+++++++l+ +++++ ++++e++                   +  ep n l+
   KOO23162.1 1148 -K-----------AQGDTPF-------------------PERYGMLAYVTDLKMMQSKMGDLVNEYA------------------GKGPEPYNSLH 1194
                   .1...........2234555...................79*************************2..................34679****** PP

                   EEEC..ETTT-S.CCCCCCCCHHHHHHCCCHHHHTTEEEEEEEE--TS---EEEEEET..TTEEECTTCTS-CCCHHHCTCCCGTTEEEEEE--SS CS
  ACC_central  471 vair..saenad.deellekleeilkelkeeLeaagvrrvTfivgrkgeyPkyfTFrerdeykEdeiiRhiEPalafqLELnrLsnfdikpvpten 563 
                   +a++   a++a+ +eel++++++ l+++k+ L+a+g+r v+++v +  + P+ f+F   + y+Ed+  R++ P     LEL+rL n + + +p+ +
   KOO23162.1 1195 IALAgsIADGANaEEELIATVQATLASHKAALQAKGIRLVSLMVPNPPKWPRQFSFPMANGYTEDKQRRNLFPTQYNLLELKRLDNWSPERLPSIS 1290
                   ***95433444489********************************************************************************** PP

                   TTEEEEEEEESS-T....T-EEEEEEEEE-BSS--TTS-HHCHHHHHHHHHHHHHHHHHHH....C--TTBSSEEEEEEEEEEESS.-H....HHH CS
  ACC_central  564 rqiHlYeavakeeekkevtdkRfFvRaiirhsdlrdkeasaeyliseaerlllealdeLEva.skkeakrtdlnHiFlnfvpevel.dp....eev 653 
                   r+  + ++++ +++   ++++R+FvR i   + l++           ae  + +aldeL +a  +++  +   +H+ ++++  +   ++     + 
   KOO23162.1 1291 RNTLVLLGSQGDKK---KMQQRVFVRGITHGTGLENPV--------VAEAAMQKALDELQLAmLDPRVASGASSHLMMHILGPFPGaSVediiGTW 1375
                   ********998877...8**********7777765544........56889******************************977664551122455 PP

                   HHHCCCHHHHHHHHHHHTTEEEEEEEEEEC-TTT-SEEEEEEEEEETTSSCEEEEEEEEEE-TT.SSE CS
  ACC_central  654 eeavrsflerygkRlwrLrVlqaEirivirlsetgkaiplRlvitnesGyvlkielYkEvkdektgev 721 
                   ++ +++++ +y++Rl +LrV ++E+r  +   + ++ +++Rlv+++  G  lk + ++E  d+ tge+
   KOO23162.1 1376 KDLMSGLISKYATRLLKLRVDEIEVRAHVG--SGASRQAVRLVASSMAGQWLKTDGFVEYLDPITGET 1441
                   7799**************************..8889999*************************9987 PP

>> CPSase_L_D2  Carbamoyl-phosphate synthase L chain, ATP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  158.3   0.0   1.1e-49   1.8e-46      22     209 ..     260     442 ..     246     444 .. 0.94

  Alignments for each domain:
  == domain 1  score: 158.3 bits;  conditional E-value: 1.1e-49
                  SSBSSHHHHHHHHHHH-SSEEEEETTCCTTTTEEEESSHHHHHHHHHHHHHHHHHHHSTS-EEEEE--SSSEEEEEEEEEETTS-EEEEEEEEECCEC CS
  CPSase_L_D2  22 apvetleealaiakeigyPviikaafglGGkGmrvarneeelaelvkkalaeakaafgnkqvlvekslkgpkeiEvevlrDakgnvitvcerenslql 119
                  a +++le+a++ a+++gyPv++ka+ g+GGkG r a +e+el+ +  + ++e +     + +++    +g +++Ev+v++D + ++i ++ r++s q+
   KOO23162.1 260 ACITSLEQAVKEADRVGYPVMLKASEGGGGKGIRKALTEAELRTAWPQVVNEVP----GSPIFLVTLCTGARHLEVQVIADGE-TAIALGGRDCSTQR 352
                  23799************************************************7....678899999**************85.79************ PP

                  TCCCCEEEES-SS--HHHHHHHHHHHHHHHHHHT-EEEEEEEEEEETTTTEEEEEEEESS--CCHHHHHHHHS--HHHHHHHHHTT--GC CS
  CPSase_L_D2 120 rtqkvievAPsqtLtdeerqalreaavkvvrevgvvgagtveflldpkskeyyviEvNtRlsvesalaekaTGldlvkeaakialgekLe 209
                  r qk+ e+ P  + +++ + ++++aa+++++++++v+agtve+l+ pk+k+yy++E+N+Rl+ve++++e +TG+ l +++++ia+g+kL 
   KOO23162.1 353 RYQKIFEEGPPIVADEDIFVEMQRAACNLCNSLDYVSAGTVEYLYLPKEKKYYFLELNPRLQVEHPVTEGITGVSLPATQIHIAMGIKLY 442
                  ***************************************************************************************996 PP

>> Biotin_carb_N  Biotin carboxylase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   83.7   0.0   7.5e-27   1.2e-23       2     110 .]      89     214 ..      88     214 .. 0.91

  Alignments for each domain:
  == domain 1  score: 83.7 bits;  conditional E-value: 7.5e-27
                    --EEEE---HHHHHHHHHHHHHT.........T-EEEEEEEGGG..TTSHHHHHSSEEEEEESSTTCCGGG-HHHHHHHHHHTT-SEEE--SSTTT CS
  Biotin_carb_N   2 ikkvlianrGeiAvriiravrel.........gietvavyseed..anslhvreadeavelgpasasesYlniekivkaakesgadavhpGyGfls 86 
                    i+k+lian+G++A++ i ++r++         +i++v+++++ed  an++++r ade v+++++s++++Y+n++ iv+++ ++g+da+ +G+G++s
     KOO23162.1  89 IRKILIANNGMAATKTIMSIRNWayntfgderAIKFVVMATPEDlaANAEFIRRADEFVQVPGGSNANNYANVQLIVDLCISQGVDALMVGWGHAS 184
                    79*****************************************6337889********************************************** PP

                    T-HHHHHHHHHT......T-EESSS-HHHH CS
  Biotin_carb_N  87 Enaefaeaveea......givfiGPsaeal 110
                    En+++ ++++++      +i+f+GP++ ++
     KOO23162.1 185 ENPKLGDLLSAKnaelglDITFVGPQSPVM 214
                    ******99986522333369*****99887 PP

>> Biotin_carb_C  Biotin carboxylase C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   78.7   0.0   1.9e-25     3e-22       2     107 ..     479     585 ..     478     586 .. 0.99

  Alignments for each domain:
  == domain 1  score: 78.7 bits;  conditional E-value: 1.9e-25
                    EEEESEETTTTTEE--CE-SEEE---STTEEEEE---TT-EE-TTS-SEEEEEEEEESSHHHHHHHHHHHHHT-EEES.S-BSHHHHHHHHH-HHH CS
  Biotin_carb_C   2 aRinaEdpeknflpssGkvtelelpegpgvRvdsgveegsevspyyDsllaKlivhgetreealarlrraLaelrieG.vktnieflrailedeef 96 
                    aRi+aE+p+++f p+sGk+++++++++++v+ + +v+++  v++y Ds +++l+++g+tre a ++l  aL+el i G ++t+ie+l ++le+++f
     KOO23162.1 479 ARITAENPDEGFKPTSGKIDRITFQSNTNVWGYFSVTADGGVHEYADSQFGHLFATGPTREVARKNLVMALKELFIMGdIRTTIEYLGELLETDAF 574
                    8*********************************************************************************************** PP

                    HHT---TTTCC CS
  Biotin_carb_C  97 akgeldtkfle 107
                    +++++dt++l+
     KOO23162.1 575 KANTIDTAWLD 585
                    *********97 PP

>> Biotin_lipoyl  Biotin-requiring enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.9   0.2   1.7e-13   2.8e-10       9      73 .]     732     790 ..     724     790 .. 0.88

  Alignments for each domain:
  == domain 1  score: 39.9 bits;  conditional E-value: 1.7e-13
                    EEEEEE.ECSESSSTTCEE-TTSEEEEEECTTEEEEEEBSSSEEEEEESSTTTEEE-TTCEEEEE CS
  Biotin_lipoyl   9 GesveegvvevlvkvGdkVkagqvlaeveamKmemeieapkaGvvkeilvkeGdtvevgdllaki 73 
                    G++     v+++v++G +Vk+g+++ae eamKm ++++a ++Gv+k   ++ G+ +++gdlla +
     KOO23162.1 732 GKL-----VRYTVEDGATVKKGETYAEAEAMKMIITLKATESGVIKH-EKPAGSIINQGDLLASL 790
                    444.....55***********************************99.7788**********975 PP

>> ATP-grasp_3  ATP-grasp domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.6   0.0   4.7e-07   0.00076      24     159 ..     269     414 ..     248     416 .. 0.88

  Alignments for each domain:
  == domain 1  score: 19.6 bits;  conditional E-value: 4.7e-07
                  -EESS--SSSEEEEESS-------B--SS--TTE................EEEE---SEEEEEEEEE.SSSEEEEEEEEEEEET....TEEEEEEES- CS
  ATP-grasp_3  24 aeeleeeekklvvKprdGaggesvrvveekeeaeaaieeve.........lvqefieGkplSvsllsdgekvlvlavnrqliekaekefvyaGnvtpi 112
                   +e++++ +++ +K ++G+gg+++r++  + e+ +a ++v          lv      ++l v++++dge++  l   +   +++ +++   G  + +
   KOO23162.1 269 VKEADRVGYPVMLKASEGGGGKGIRKALTEAELRTAWPQVVnevpgspifLVTLCTGARHLEVQVIADGETAIALGGRDCSTQRRYQKIFEEGPPIVA 366
                  5688899*********************99999999988878999***9999999999******************9999999999999999999999 PP

                  ---HHHHHHHHHHHHHTTSTT--EEEEEEEE..ESS.SEEEEEEESS-- CS
  ATP-grasp_3 113 etelkeevvelaeevvekleglaGyvGvDlv..lkdeepyviEvNPRlt 159
                  + +   e++++a +++++l + ++   v+ +   k+++ y++E NPRl+
   KOO23162.1 367 DEDIFVEMQRAACNLCNSL-DYVSAGTVEYLylPKEKKYYFLELNPRLQ 414
                  99999**************.888888888873357799*********97 PP

>> Biotin_lipoyl_2  Biotin-lipoyl like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   9.9e-05      0.16       5      28 ..     726     749 ..     722     753 .. 0.90
   2 ?    0.1   0.0      0.44   7.2e+02      21      33 ..     778     790 ..     777     795 .. 0.87

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 9.9e-05
  Biotin_lipoyl_2   5 IaapvsGrVaqlnVkdGqrVkaGd 28 
                      + +++ G++++  V+dG  Vk+G 
       KOO23162.1 726 LRSDITGKLVRYTVEDGATVKKGE 749
                      6899*******************7 PP

  == domain 2  score: 0.1 bits;  conditional E-value: 0.44
  Biotin_lipoyl_2  21 GqrVkaGdvLael 33 
                      G  +++Gd+La l
       KOO23162.1 778 GSIINQGDLLASL 790
                      7789*******98 PP

>> Dala_Dala_lig_C  D-ala D-ala ligase C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.0     2e-05     0.033      28     103 ..     268     346 ..     251     412 .. 0.77

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 2e-05
                      HHHHHHHC-SSEEEEESSSSTTTTEEEESSGGGHHHHHHHHHTT...-SCEEEEE--ESEEEEEEEEETSSCEEEEEEE CS
  Dala_Dala_lig_C  28 lekveeelgypvfVKpareGSSvGvskveseeelkeaieeafky...dekvlvEeaiegreievavlgneklevsevge 103
                        k+ +++gypv+ K+++ G   G+ k+ +e+el+ a  + ++        lv     +r +ev v+ ++++ ++  g+
       KOO23162.1 268 AVKEADRVGYPVMLKASEGGGGKGIRKALTEAELRTAWPQVVNEvpgSPIFLVTLCTGARHLEVQVIADGETAIALGGR 346
                      4567789*****************************988877652213445677777999*****99988877766555 PP

>> ATP-grasp  ATP-grasp domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   0.0   0.00032      0.53      13     159 ..     261     412 ..     249     414 .. 0.65

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.00032
                 EECCHHHHHHHHHHH-SCEEEEESSS-CTTTTEEEECTCCGHHCHHHHC....GTTCEEEEE----SEEEEEEEEEETTC-EEE-...-EEEEEEETTE CS
   ATP-grasp  13 aveskeeleeaaeelglpvvvKarrlgydGkGqsvvrseedleqaleal....keekvivEefvpfekElsvlvvrsaeGetafy...pvvetvqedgi 104
                  ++s e++ + a+++g+pv++K +  g  GkG      e++l++a+ ++     + ++ +       + l v v+  a+Geta+        t ++ + 
  KOO23162.1 261 CITSLEQAVKEADRVGYPVMLK-ASEGGGGKGIRKALTEAELRTAWPQVvnevPGSPIFLVTLCTGARHLEVQVI--ADGETAIAlggRDCSTQRRYQK 356
                 578889999999**********.666779**************99988765544444444444444444444333..4455544411133444444455 PP

                 EEEEEECEE-SCHHHHHHHHHHHHHHHHHTSSEEEEEEEEEETTCT.EEEEEEESS CS
   ATP-grasp 105 lrlsvapaevsekaqkkaeeiakkiveeLggvGvfavElFvledge.llvnElapR 159
                 + +   p  ++e++  + ++ a +++++L++v   +vE  +l +++  ++ El pR
  KOO23162.1 357 IFEEGPPIVADEDIFVEMQRAACNLCNSLDYVSAGTVEYLYLPKEKkYYFLELNPR 412
                 55555666677777777777777777777777777777666633333777777777 PP

>> GCV_H  Glycine cleavage H-protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.6   0.0      0.15   2.5e+02      50      81 ..      44      75 ..      40      81 .. 0.91
   2 ?    7.1   0.1    0.0029       4.8      29      72 ..     730     772 ..     724     786 .. 0.86

  Alignments for each domain:
  == domain 1  score: 1.6 bits;  conditional E-value: 0.15
                EEEEEEESS-EEEEE-SSSEEEEEE-GGGTT- CS
       GCV_H 50 slaavEsvKaasevyapvsGevvevNekleee 81
                +++++E++K+a+e+ a  +  + +  ++lee+
  KOO23162.1 44 TVSMMETGKRAAEIKAVATAAMKDTDKELEEK 75
                57899********************9999986 PP

  == domain 2  score: 7.1 bits;  conditional E-value: 0.0029
                 HH-SEEEEE---TT-EE-TT-EEEEEEESS-EEEEE-SSSEEEE CS
       GCV_H  29 elgdvvfvelpevgtkvkkgeslaavEsvKaasevyapvsGevv 72 
                   g++v +++ e+g++vkkge+ a  E+ K++ ++ a  sG + 
  KOO23162.1 730 ITGKLVRYTV-EDGATVKKGETYAEAEAMKMIITLKATESGVIK 772
                 5678888876.78**********************999999875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (2173 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       426  (0.0237604); expected 358.6 (0.02)
Passed bias filter:                      368  (0.0205254); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 1.10u 0.35s 00:00:01.45 Elapsed: 00:00:00.48
# Mc/sec: 13530.29
//
Query:       KOO23163.1  [L=713]
Description: efflux [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.3e-23   82.7  11.3    4.4e-23   81.7  11.3    1.5  1  MMPL      MMPL family


Domain annotation for each model (and alignments):
>> MMPL  MMPL family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   81.7  11.3   2.5e-27   4.4e-23     120     302 ..     264     444 ..     237     506 .. 0.82

  Alignments for each domain:
  == domain 1  score: 81.7 bits;  conditional E-value: 2.5e-27
        MMPL 120 leglkvevtGpaatladlrdasdrdlklievvtlvvilviLlivyrSlvaallplltvvvsllaalglvlilalllglelstfvlgllvvlliavGtDY 218
                 ++ l++ ++  + ++a   d++d+ ++ + ++t+ +++ iL+ v+r++   l+pl+ +v  l+ +  +++++a++   ++++++++l+ +  +a ++DY
  KOO23163.1 264 DSRLEITIVSLPDVFAAALDGVDQTMR-VSTMTAPLAFGILACVLRNVRFLLIPLINIVACLMGTTIVMYFVAKH--SDVTSQAPALMLACSLAMSIDY 359
                 566777777777777777777776665.566899************************99998887777888877..5678999*************** PP

        MMPL 219 allLvsRyreelaagedree.aviravastgkvvtaaGltvaiamlgLvvarlpvlaqvGvaialGvlvdvlivlTllPAllvll 302
                  l+L++R+r+el   ++  + a+ +++ ++g++v+ +G+t+ + +lg++++ +++++++Gva a++v++++ ++l ++P +l  +
  KOO23163.1 360 SLFLLTRFRDELVVRKRPYRaAIVTMLETSGHTVLVSGVTLTLCFLGMLLIPVSTISSLGVASAVTVAFAITMALIFTPTMLLAF 444
                 ***********9877776541777889999************************************************9987764 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (713 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       711  (0.0396564); expected 358.6 (0.02)
Passed bias filter:                      388  (0.0216409); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.62u 0.27s 00:00:00.89 Elapsed: 00:00:00.43
# Mc/sec: 4987.28
//
Query:       KOO23164.1  [L=212]
Description: ubiquitin-conjugating enzyme e2 s-like protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.2e-36  125.4   0.0    1.6e-36  125.0   0.0    1.2  1  UQ_con     Ubiquitin-conjugating enzyme
  ------ inclusion threshold ------
       0.09   12.5   0.0       0.13   11.9   0.0    1.4  1  Prok-E2_B  Prokaryotic E2 family B


Domain annotation for each model (and alignments):
>> UQ_con  Ubiquitin-conjugating enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  125.0   0.0   1.8e-40   1.6e-36       2     138 ..      24     158 ..      23     160 .. 0.97

  Alignments for each domain:
  == domain 1  score: 125.0 bits;  conditional E-value: 1.8e-40
                 HHHHHHHHHHSTTTTEEEEEEETTEECEEEEEEEB.TTSTTTTEEEEEEEE--TTTTTS--EEEESST-SCTTBETTSBB-CGGGSTTT--TTSHHHHH CS
      UQ_con   2 lqkelkelakkkpsgisaklvddenlfewkvlikgpedtpYeggvFklelefpedYPlkpPkvkfvtkifHPnvdksGevcldiLkeekWspaltlesv 100
                 ++ke+++l +++ +gi+++l ++ +++ + + i+gp+ tp+eggv+k++l++p+dYP+ pPk  f t+ifHPn++k+Ge+c++ Lk++ W+  l + +v
  KOO23164.1  24 VAKEIRKLCTEPLDGIKVQLNEE-DVTDIIAEIHGPDSTPFEGGVYKVKLTLPTDYPHAPPKGFFLTRIFHPNISKTGEICVNTLKKD-WKNDLGIGHV 120
                 689*******************7.**************************************************************55.********** PP

                 HHHHHHHHHS--TTS-SSHHHHHHHHHTHHHHHHHHHH CS
      UQ_con 101 llsiqsLlaepnpesplnkeaakllkkdreeykkkvke 138
                 l+ +  Ll +p pes+ln+ea+kl+ +d ++y kk+++
  KOO23164.1 121 LQVVRCLLINPFPESALNEEAGKLFMEDYDTYFKKARM 158
                 ****************************9999999976 PP

>> Prok-E2_B  Prokaryotic E2 family B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   1.5e-05      0.13      26      97 ..      55     123 ..      32     157 .. 0.77

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 1.5e-05
   Prok-E2_B  26 ierssvkt...sggtvdlrlvypdsfpllppavflqdpeqlkllpHintfggaLCllee.eldldewdpngsvadv 97 
                 i++++      +gg+++++l +p ++p +pp+ f   +      p i++ +g++C+  +  +d+ ++   g v +v
  KOO23164.1  55 IHGPD--StpfEGGVYKVKLTLPTDYPHAPPKGFFLTRI---FHPNISK-TGEICVN-TlKKDWKNDLGIGHVLQV 123
                 44433..03469********************9988777...6788888.9****95.669999987666666555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (212 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1079  (0.0601818); expected 358.6 (0.02)
Passed bias filter:                      577  (0.0321825); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.42u 0.29s 00:00:00.71 Elapsed: 00:00:00.42
# Mc/sec: 1504.50
//
Query:       KOO23165.1  [L=397]
Description: histone deacetylase 2 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
      2e-80  270.5   0.2    3.1e-80  269.9   0.2    1.3  1  Hist_deacetyl  Histone deacetylase domain


Domain annotation for each model (and alignments):
>> Hist_deacetyl  Histone deacetylase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  269.9   0.2   1.7e-84   3.1e-80      12     306 ..       2     282 ..       1     283 [. 0.94

  Alignments for each domain:
  == domain 1  score: 269.9 bits;  conditional E-value: 1.7e-84
                    HHHHHHT.THHHHCCE.EE-----HHHHTTTS-HHHHHHHHCHHHHCHHT.TTHCCHHHCCTSTSSSSSTHCTTTCCHHHHHHHHHHHHHHHHHHT CS
                    xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Hist_deacetyl  12 leslaesvglldelelliqpseatkeellkvHskeYlelleslsnelkkkeeakekeleeiasklldddtpvspktlkaallavgavleavdavls 107
                    +++l+ s++l +++ ++ +p++at+ee+  +Hs+eY++++++++ + +++    +k+l++ +     +d+pv++++++++++ +g++++++ ++ +
     KOO23165.1   2 THHLILSYNLYKKM-DVYRPHHATDEEMMLFHSPEYIDFMRRVTPDTQQDF---AKQLQRFN----GEDCPVFDGLYDYCRIYTGGSIDGAMKLNH 89 
                    67788888988665.57***************************9988886...45555555....579**************************9 PP

                    TSSSEEEETT.SS--TT-BTTB-BTTBSS-HHHHHHHHHHHCC-SS-EEEEE-SSS--HHHHHHCTT-TTEEEEEEEE-CCTSTTSS--TT---SG CS
                    xxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Hist_deacetyl 108 gsvkaafvlv.rPpgHHakaseasGFClvNnvaiaikylqakhelkrvailDvDvHhGnGteeafysdpdvltlSiHryegifyPgtgaledlgeg 202
                    g   a+++++  ++ HHak+seasGFC+vN+++++i +l +   ++rv++lD+D+HhG+G+eeaf  +++v+t+S+H+y++ f+Pgtg+++d+g +
     KOO23165.1  90 G--IADVAINwAGGLHHAKRSEASGFCYVNDIVLGILELLK--YHPRVLYLDIDIHHGDGVEEAFCTTDRVMTVSFHKYGDYFFPGTGDVKDVGVK 181
                    9..99999999****************************99..347************************************************** PP

                    GGTTSEEEEEE-TT-BHHHHHHHHHHCHHHHHCCH--SEEEEEE-STTBTTSTT-S-BB-HHHHHHHHHHHCCCHGS-G.EEEEE-S---HHHHHH CS
                    xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Hist_deacetyl 203 kgkgfnlnvpleegtgdeeylkvfeeilrpvleefkPdlilvsaGfDalkgdplgelnlsvegykeltkklaeladkvkkvvllleGGYnlealar 298
                    +gk ++lnvpl++g++de+y+++f  ++++v+e ++P ++++++G D+l+gd+lg +nlsv+g++e+++++++ +    ++++l++GGY+++++ar
     KOO23165.1 182 AGKYYSLNVPLKDGMNDESYQRIFVPVMQKVMEIYQPTALVLQCGSDSLSGDRLGCFNLSVRGHAECVRRMLTYCL---PTLILGGGGYTIRNVAR 274
                    ***************************************************************************9...89*************** PP

                    HHHHHHHH CS
                    xxxxxxxx RF
  Hist_deacetyl 299 avtavlsa 306
                    ++t+ +++
     KOO23165.1 275 CWTYETAV 282
                    ***99875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (397 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       524  (0.0292264); expected 358.6 (0.02)
Passed bias filter:                      495  (0.0276089); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.52u 0.22s 00:00:00.74 Elapsed: 00:00:00.40
# Mc/sec: 2952.44
//
Query:       KOO23166.1  [L=115]
Description: transport protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.4e-08   32.1   2.1    6.1e-08   32.0   1.5    1.4  1  MMPL      MMPL family
  ------ inclusion threshold ------
      0.044   14.0   1.9      0.077   13.2   1.6    1.6  1  DUF4705   Domain of unknown function (DUF4705)


Domain annotation for each model (and alignments):
>> MMPL  MMPL family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.0   1.5   6.8e-12   6.1e-08     243     313 ..       2      73 ..       1      92 [. 0.84

  Alignments for each domain:
  == domain 1  score: 32.0 bits;  conditional E-value: 6.8e-12
        MMPL 243 avastgkvvtaaGltvaiamlgLvvarlpvlaqvGvaialGvlvdvlivlTll.P.AllvllGraalakprrk 313
                 a+  tg+ +  aG+++ +a+ +L++   p+l+q+G  + +Gvl+d +i+  ++ P A++ l G +  ++pr++
  KOO23166.1   2 ALDATGNIICLAGVIMTLAFGSLLIGVSPTLNQIGYLLIVGVLIDCFITTKVIiPcAMTLLPGDS-NFWPRKR 73 
                 7889**************************************************83555556777.4455444 PP

>> DUF4705  Domain of unknown function (DUF4705)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   1.6   8.6e-06     0.077      23      44 ..      69      89 ..      60      97 .. 0.79

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 8.6e-06
     DUF4705 23 rPssgllvAsagqvPaclPavg 44
                +P+ +l+vAs+g vP     ++
  KOO23166.1 69 WPRKRLPVASVGRVPIT-ARAS 89
                ***************77.4444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (115 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       512  (0.0285571); expected 358.6 (0.02)
Passed bias filter:                      342  (0.0190752); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.40u 0.28s 00:00:00.68 Elapsed: 00:00:00.43
# Mc/sec: 799.33
//
Query:       KOO23167.1  [L=238]
Description: hypothetical protein Ctob_003328 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.1e-13   51.3   0.1    8.8e-06   26.0   0.0    2.4  2  PDZ              PDZ domain
      1e-08   35.4   1.7     0.0089   16.3   0.0    3.3  2  PDZ_2            PDZ domain
    1.2e-07   31.5   4.6       0.04   13.8   0.0    4.1  4  PDZ_6            PDZ domain
     0.0045   16.3   0.1      0.017   14.4   0.1    1.9  1  Beta_elim_lyase  Beta-eliminating lyase
  ------ inclusion threshold ------
      0.063   13.2   0.1       0.23   11.4   0.0    1.9  2  Propeptide_C1    Peptidase family C1 propeptide


Domain annotation for each model (and alignments):
>> PDZ  PDZ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.2   0.1   1.8e-08   6.6e-05       9      80 ..      60     122 ..      51     124 .. 0.71
   2 !   26.0   0.0   2.5e-09   8.8e-06       2      70 ..     132     192 ..     131     204 .. 0.78

  Alignments for each domain:
  == domain 1  score: 23.2 bits;  conditional E-value: 1.8e-08
                 TSESSEEEEEETTSSSSSSEEEEEECTTSHHHHHTSSTTEEEEEETTEETTTSHHHHHHHHHHTTTSEEEEE CS
         PDZ   9 rgglGfslkggsdqrgdkgifvsevlpggaaeadglkvGDkIlsvNgvdvenvsheeavqaikgskgkvtLt 80 
                    +G+ lk        ++ +v +v+  g a+ + l++GD++ls+N+ + +++ h e ++ +k+ +g ++++
  KOO23167.1  60 DTIFGVVLKDY------EHPYVDKVVSTGLAAGK-LQAGDQVLSINDWKAVGH-H-ETAERLKQLTGIIRVN 122
                 55566666642......368************99.***********9887777.3.4445555555666665 PP

  == domain 2  score: 26.0 bits;  conditional E-value: 2.5e-09
                 EEEETS.TTSESSEEEEEETTSSSSSSEEEEEECTTSHHHHHTSSTTEEEEEETTEETTTSHHHHHHHHH CS
         PDZ   2 vsleke.grgglGfslkggsdqrgdkgifvsevlpggaaeadglkvGDkIlsvNgvdvenvsheeavqai 70 
                 v lek+ +  ++G++l+  +      + ++ +v  +g a+ + l++GD++ls+N+ + + + h++a   +
  KOO23167.1 132 VLLEKPdKDTRFGVTLRDYE------HPYIEKVASDGLAHGK-LRAGDQVLSINDWKARHH-HDTAE-RL 192
                 6677888999******9633......68**************.************999988.55543.34 PP

>> PDZ_2  PDZ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.7   1.2   1.6e-05     0.058      11      47 ..      71     106 ..      25     134 .. 0.78
   2 !   16.3   0.0   2.5e-06    0.0089       4      56 ..     144     192 ..     141     212 .. 0.79

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 1.6e-05
                 --..-EEEEEE-TTSGGGGT.--TT-EEEEETTB--...S CS
       PDZ_2  11 edtggvlvvsVkeggPaakaglkagDvilkvdgkkv...k 47 
                 e     +v +V + g aa++ l+agD++l+++++k    +
  KOO23167.1  71 E---HPYVDKVVSTGLAAGK-LQAGDQVLSINDWKAvghH 106
                 3...4678888888888888.999*********9984333 PP

  == domain 2  score: 16.3 bits;  conditional E-value: 2.5e-06
                 .XX------..-EEEEEE-TTSGGGGT.--TT-EEEEETTB--SSHHHHHHHH CS
       PDZ_2   4 GvsvsdeedtggvlvvsVkeggPaakaglkagDvilkvdgkkvksledlisll 56 
                 Gv+++d e     ++ +V ++g a+++ l+agD++l+++++k     d  ++l
  KOO23167.1 144 GVTLRDYE---HPYIEKVASDGLAHGK-LRAGDQVLSINDWKARHHHDTAERL 192
                 66666666...58999******99999.**************96655555544 PP

>> PDZ_6  PDZ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.8   0.4     0.029   1.1e+02       2      16 ..      35      49 ..      34      51 .. 0.84
   2 !   13.8   0.0   1.1e-05      0.04       9      27 ..      82      99 ..      74     125 .. 0.75
   3 !   13.6   0.0   1.2e-05     0.044       2      43 ..     155     193 ..     154     205 .. 0.78
   4 ?    0.3   0.0      0.18   6.4e+02      30      50 ..     203     220 ..     194     223 .. 0.80

  Alignments for each domain:
  == domain 1  score: 2.8 bits;  conditional E-value: 0.029
       PDZ_6  2 VtaVdpgsPAdrAGl 16
                V +V +  PAd+AG+
  KOO23167.1 35 VVTVGAAAPADEAGV 49
                67788889******8 PP

  == domain 2  score: 13.8 bits;  conditional E-value: 1.1e-05
       PDZ_6  9 sPAdrAG.lrvGDiilsvNG 27
                + A+  G l++GD++ls+N+
  KOO23167.1 82 GLAA--GkLQAGDQVLSIND 99
                5555..99***********7 PP

  == domain 3  score: 13.6 bits;  conditional E-value: 1.2e-05
       PDZ_6   2 VtaVdpgsPAdrAG.lrvGDiilsvNGqpveglsladvaallr 43 
                 ++ V  ++ A   G lr+GD++ls+N+     ++ +d a+ l+
  KOO23167.1 155 IEKVASDGLAH--GkLRAGDQVLSINDWKA--RHHHDTAERLK 193
                 66777888888..88***********9887..77777776666 PP

  == domain 4  score: 0.3 bits;  conditional E-value: 0.18
       PDZ_6  30 veglsladvaallrgsagesv 50 
                 v  l  ++v+ l++ ++++++
  KOO23167.1 203 V--LRSEEVQKLIQ-HENSPL 220
                 4..67799*****9.777765 PP

>> Beta_elim_lyase  Beta-eliminating lyase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.4   0.1   4.9e-06     0.017     241     288 ..     126     214 ..      13     218 .. 0.80

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 4.9e-06
                      H...........................................HHHHHHHHSSTTHHHHHHHHHHHHHHHHHCT--EEECCGTTCCEE CS
  Beta_elim_lyase 241 a.........................................leagiraleeglaslerdhktaeqlaeklelvrlaiprrvytqehld 288
                                                                l+ag  +l +++++++++h+tae+l++ + ++r+ + r++++q+ + 
       KOO23167.1 126 NlreeevllekpdkdtrfgvtlrdyehpyiekvasdglahgkLRAGDQVLSINDWKARHHHDTAERLKQLMGVIRIKVLRSEEVQKLIQ 214
                      044444455566666666666777777777888888888888999**************************************998765 PP

>> Propeptide_C1  Peptidase family C1 propeptide
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.0      0.87   3.1e+03      16      35 ..     100     117 ..      98     120 .. 0.66
   2 ?   11.4   0.0   6.5e-05      0.23      16      37 ..     180     199 ..     178     201 .. 0.92

  Alignments for each domain:
  == domain 1  score: -1.8 bits;  conditional E-value: 0.87
                    EEE----SSBSHHHHHCCS- CS
  Propeptide_C1  16 WkAgrNFdnttlsyikgLlG 35 
                    WkA   ++  t + +k+L G
     KOO23167.1 100 WKAVGHHE--TAERLKQLTG 117
                    77755555..6677888777 PP

  == domain 2  score: 11.4 bits;  conditional E-value: 6.5e-05
                    EEE----SSBSHHHHHCCS-B- CS
  Propeptide_C1  16 WkAgrNFdnttlsyikgLlGvl 37 
                    WkA + +d  t + +k+L+Gv+
     KOO23167.1 180 WKARHHHD--TAERLKQLMGVI 199
                    ********..99*********7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (238 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       514  (0.0286686); expected 358.6 (0.02)
Passed bias filter:                      380  (0.0211947); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.43u 0.27s 00:00:00.70 Elapsed: 00:00:00.42
# Mc/sec: 1688.49
//
Query:       KOO23168.1  [L=274]
Description: hypothetical protein Ctob_003319 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (274 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       339  (0.0189079); expected 358.6 (0.02)
Passed bias filter:                      316  (0.0176251); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.42u 0.25s 00:00:00.67 Elapsed: 00:00:00.40
# Mc/sec: 2047.49
//
Query:       KOO23169.1  [L=211]
Description: hypothetical protein Ctob_003318 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (211 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       341  (0.0190195); expected 358.6 (0.02)
Passed bias filter:                      301  (0.0167884); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.24s 00:00:00.62 Elapsed: 00:00:00.38
# Mc/sec: 1678.45
//
Query:       KOO23170.1  [L=97]
Description: hypothetical protein Ctob_003317 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (97 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       384  (0.0214178); expected 358.6 (0.02)
Passed bias filter:                      287  (0.0160076); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.23s 00:00:00.56 Elapsed: 00:00:00.37
# Mc/sec: 795.94
//
Query:       KOO23171.1  [L=78]
Description: hypothetical protein Ctob_003316 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.042   13.6   0.0      0.045   13.5   0.0    1.1  1  DUF2538   Protein of unknown function (DUF2538)


Domain annotation for each model (and alignments):
>> DUF2538  Protein of unknown function (DUF2538)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.0   2.5e-06     0.045      70     102 ..      26      58 ..      18      76 .. 0.87

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 2.5e-06
     DUF2538  70 valpeifealdvfeselplsfvydengltealk 102
                 +al e+f+a ++ + ++ +sf yd+++l e  +
  KOO23171.1  26 IALEELFDACKIGDADIKYSFPYDQTNLKEDPR 58 
                 89*************************998755 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (78 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       207  (0.0115455); expected 358.6 (0.02)
Passed bias filter:                      197  (0.0109878); expected 358.6 (0.02)
Passed Vit filter:                        11  (0.000613531); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.34u 0.24s 00:00:00.58 Elapsed: 00:00:00.39
# Mc/sec: 596.59
//
Query:       KOO23172.1  [L=312]
Description: hypothetical protein Ctob_003315 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (312 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       518  (0.0288917); expected 358.6 (0.02)
Passed bias filter:                      271  (0.0151152); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.44u 0.27s 00:00:00.71 Elapsed: 00:00:00.43
# Mc/sec: 2173.77
//
Query:       KOO23173.1  [L=86]
Description: hypothetical protein Ctob_003314 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.021   14.8   0.0      0.023   14.6   0.0    1.0  1  TSC21     TSC21 family


Domain annotation for each model (and alignments):
>> TSC21  TSC21 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.6   0.0   1.3e-06     0.023     119     177 ..      20      77 ..       7      79 .. 0.84

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 1.3e-06
       TSC21 119 aqgdpnkvkqsadfpclleperqpaaeegkGylllpGcacphhqkvkvpilnrwGpllp 177
                 aq d n   +s +f   + p   pa+++++  ll  G +  + + +++pi + wG l p
  KOO23173.1  20 AQHDANDC-ESVQFVSGIAPSWAPAPQASTELLLSYGINDCEAKVARIPIAQVWGMLRP 77 
                 56666655.6889999**********************9889999**********9988 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (86 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       168  (0.00937029); expected 358.6 (0.02)
Passed bias filter:                      151  (0.00842211); expected 358.6 (0.02)
Passed Vit filter:                         8  (0.000446204); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.34u 0.25s 00:00:00.59 Elapsed: 00:00:00.39
# Mc/sec: 654.98
//
Query:       KOO23174.1  [L=772]
Description: hypothetical protein Ctob_001809 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (772 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       415  (0.0231469); expected 358.6 (0.02)
Passed bias filter:                      271  (0.0151152); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.61u 0.27s 00:00:00.88 Elapsed: 00:00:00.45
# Mc/sec: 5150.80
//
Query:       KOO23175.1  [L=300]
Description: hypothetical protein Ctob_001808 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (300 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       483  (0.0269396); expected 358.6 (0.02)
Passed bias filter:                      324  (0.0180713); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.44u 0.24s 00:00:00.68 Elapsed: 00:00:00.40
# Mc/sec: 2237.47
//
Query:       KOO23176.1  [L=301]
Description: ankyrin repeat protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.2e-26   92.7   1.8    1.2e-09   38.5   0.0    5.5  5  Ank_4     Ankyrin repeats (many copies)
    2.5e-22   78.6   4.4    1.4e-07   31.7   0.1    5.0  5  Ank_5     Ankyrin repeats (many copies)
      4e-22   77.6   8.6    0.00021   21.6   0.6    4.7  5  Ank       Ankyrin repeat
      8e-22   77.6   0.0    5.8e-13   49.2   0.0    2.4  2  Ank_2     Ankyrin repeats (3 copies)
    2.3e-16   58.2   1.6     0.0035   17.7   0.0    5.6  6  Ank_3     Ankyrin repeat


Domain annotation for each model (and alignments):
>> Ank_4  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.8   0.0   0.00035       1.2      24      55 .]      54      86 ..      51      86 .. 0.89
   2 !   22.0   0.1   5.2e-08   0.00018       8      43 ..      72     107 ..      70     112 .. 0.88
   3 !   38.5   0.0   3.4e-13   1.2e-09      11      54 ..     120     164 ..     115     165 .. 0.90
   4 !   22.6   0.0   3.2e-08   0.00012      14      46 ..     158     189 ..     156     192 .. 0.93
   5 !    5.2   0.0    0.0093        33      17      40 ..     194     216 ..     190     228 .. 0.84

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.00035
       Ank_4 24 gadinaqdnrsGetalhiAa..krgnveilklLl 55
                ++di+ q n+ G+ alh Aa  +rg++e ++ Ll
  KOO23176.1 54 KPDIDGQ-NKKGRVALHLAAcnWRGDLEPVRVLL 86
                689****.**********999****998887776 PP

  == domain 2  score: 22.0 bits;  conditional E-value: 5.2e-08
       Ank_4   8 aai.sgrlelvrlLlekgadinaqdnrsGetalhiAa 43 
                 a++  g+le vr Lle+gad++a+ +r+G+ alhi a
  KOO23176.1  72 ACNwRGDLEPVRVLLEHGADPDAR-DRDGLAALHILA 107
                 7778899999**************.*********966 PP

  == domain 3  score: 38.5 bits;  conditional E-value: 3.4e-13
       Ank_4  11 sgrlelvrlLlekgadinaqdnrsGetalhiAakrgn.veilklL 54 
                 +g +e++rlLl +gad+na++ ++G+t+lhiAa +g+ ++ l++L
  KOO23176.1 120 YGGVEVARLLLKHGADLNATIEADGLTPLHIAAAGGKaFRLLEWL 164
                 6779********************************66******9 PP

  == domain 4  score: 22.6 bits;  conditional E-value: 3.2e-08
       Ank_4  14 lelvrlLlekgadinaqdnrsGetalhiAakrg 46 
                 ++l+++L +kga +na  +rsG t+lh A++ g
  KOO23176.1 158 FRLLEWLASKGAHVNAM-DRSGATPLHAAVRAG 189
                 5799*************.************987 PP

  == domain 5  score: 5.2 bits;  conditional E-value: 0.0093
       Ank_4  17 vrlLlekgadinaqdnrsGetalh 40 
                 +r Lle gad+    +++G+ a +
  KOO23176.1 194 ARALLEAGADPSVP-DAEGRLAAD 216
                 799********998.****98865 PP

>> Ank_5  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.2   0.0     0.032   1.2e+02      14      56 .]      31      71 ..      13      71 .. 0.79
   2 !   25.0   0.1   4.6e-09   1.6e-05       7      55 ..      55     105 ..      49     106 .. 0.89
   3 !   17.3   0.1   1.2e-06    0.0043      23      56 .]     116     151 ..     115     151 .. 0.89
   4 !   11.3   0.0   9.1e-05      0.33      15      39 ..     143     168 ..     139     172 .. 0.83
   5 !   31.7   0.1   3.8e-11   1.4e-07       1      54 [.     164     216 ..     164     216 .. 0.94

  Alignments for each domain:
  == domain 1  score: 3.2 bits;  conditional E-value: 0.032
       Ank_5 14 gggntpLhvAakygaadvvrlLlargadlnltdsrGltaldlA 56
                +g ++pL vA+k+++ +  ++ +    d++ +++ G+ al+lA
  KOO23176.1 31 QGLVEPLKVAIKGRYDEEREEQI--KPDIDGQNKKGRVALHLA 71
                45557888888888888888888..888888888888888887 PP

  == domain 2  score: 25.0 bits;  conditional E-value: 4.6e-09
       Ank_5   7 advnrldgggntpLhvAa..kygaadvvrlLlargadlnltdsrGltaldl 55 
                  d++ ++++g  +Lh+Aa  ++g ++ vr+Ll++gad++++d +Gl al++
  KOO23176.1  55 PDIDGQNKKGRVALHLAAcnWRGDLEPVRVLLEHGADPDARDRDGLAALHI 105
                 67888999********87655****************************97 PP

  == domain 3  score: 17.3 bits;  conditional E-value: 1.2e-06
       Ank_5  23 Aak.ygaadvvrlLlargadlnlt.dsrGltaldlA 56 
                 Aa  yg  +v+rlLl++gadln+t +++Glt+l++A
  KOO23176.1 116 AAGrYGGVEVARLLLKHGADLNATiEADGLTPLHIA 151
                 6677999****************956666*****99 PP

  == domain 4  score: 11.3 bits;  conditional E-value: 9.1e-05
       Ank_5  15 ggntpLhvAak.ygaadvvrlLlarg 39 
                 +g tpLh+Aa  + a++++++L   g
  KOO23176.1 143 DGLTPLHIAAAgGKAFRLLEWLASKG 168
                 588********9999***99997555 PP

  == domain 5  score: 31.7 bits;  conditional E-value: 3.8e-11
       Ank_5   1 LlehgpadvnrldgggntpLhvAakygaadvvrlLlargadlnltdsrGltald 54 
                 L+++g a vn+ d+ g tpLh A+++g ++ +r Ll+ gad+ + d++G++a d
  KOO23176.1 164 LASKG-AHVNAMDRSGATPLHAAVRAGLPREARALLEAGADPSVPDAEGRLAAD 216
                 67788.999999*************************************98876 PP

>> Ank  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.3   0.0   7.1e-08   0.00026       2      31 ..      64      96 ..      63      97 .. 0.92
   2 !   21.6   0.6   5.9e-08   0.00021       1      30 [.      98     139 ..      98     140 .. 0.80
   3 !   18.9   0.0   4.1e-07    0.0015       1      31 [.     143     175 ..     143     176 .. 0.88
   4 !   18.1   0.0   7.7e-07    0.0028       2      31 ..     178     208 ..     177     209 .. 0.91
   5 ?   -4.0   0.0         5   1.8e+04      19      27 ..     225     232 ..     222     233 .. 0.73

  Alignments for each domain:
  == domain 1  score: 21.3 bits;  conditional E-value: 7.1e-08
                SBBHHHHHH..HHTTHHHHHHHH.TTTSTTCBT CS
         Ank  2 GnTPLHlAa..tngkkriiklLL.hGAnlnald 31
                G+ +LHlAa  ++g+++ ++ LL hGA+++a+d
  KOO23176.1 64 GRVALHLAAcnWRGDLEPVRVLLeHGADPDARD 96
                6779***999*9999*****************9 PP

  == domain 2  score: 21.6 bits;  conditional E-value: 5.9e-08
                 TSBBHHHH.........HH..HHTTHHHHHHHH.TTTSTTCB CS
         Ank   1 dGnTPLHl.........Aa..tngkkriiklLL.hGAnlnal 30 
                 dG  +LH+         Aa  ++g++++++lLL hGA+lna+
  KOO23176.1  98 DGLAALHIlaggcngggAAagRYGGVEVARLLLkHGADLNAT 139
                 78889**755555555533699999***************96 PP

  == domain 3  score: 18.9 bits;  conditional E-value: 4.1e-07
                 TSBBHHHHHHHHTT.HHHHHHHH.TTTSTTCBT CS
         Ank   1 dGnTPLHlAatngk.kriiklLL.hGAnlnald 31 
                 dG TPLH+Aa +gk  r +++L  +GA +na d
  KOO23176.1 143 DGLTPLHIAAAGGKaFRLLEWLAsKGAHVNAMD 175
                 8*********888788899998877*****988 PP

  == domain 4  score: 18.1 bits;  conditional E-value: 7.7e-07
                 SBBHHHHHHHHTTHHHHHHHH.TTTSTTCBT CS
         Ank   2 GnTPLHlAatngkkriiklLL.hGAnlnald 31 
                 G TPLH A++ g +r +++LL  GA++   d
  KOO23176.1 178 GATPLHAAVRAGLPREARALLeAGADPSVPD 208
                 88*******************88***98766 PP

  == domain 5  score: -4.0 bits;  conditional E-value: 5
                 HHHHTTTST CS
         Ank  19 klLLhGAnl 27 
                  +LL +A+l
  KOO23176.1 225 AALL-RADL 232
                 5688.8887 PP

>> Ank_2  Ankyrin repeats (3 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.0   0.0     3e-09   1.1e-05      17      83 .]      15      96 ..       2      96 .. 0.81
   2 !   49.2   0.0   1.6e-16   5.8e-13       5      82 ..     117     207 ..     114     208 .. 0.83

  Alignments for each domain:
  == domain 1  score: 26.0 bits;  conditional E-value: 3e-09
       Ank_2 17 legadpnkngktaLhyAakngnleivklLle....h............adndgrtpLhyAars..ghleivklLlekgadinlkd 83
                l+g+d++   +  Lh++a++g +e +k  ++    +            ++++gr +Lh+Aa++  g le v++Lle+gad++++d
  KOO23176.1 15 LYGTDAG---RLSLHASAEQGLVEPLKVAIKgrydEereeqikpdidgQNKKGRVALHLAACNwrGDLEPVRVLLEHGADPDARD 96
                3677776...99*********88999****8665415667788776666699*************9***************9987 PP

  == domain 2  score: 49.2 bits;  conditional E-value: 1.6e-16
       Ank_2   5 ak.ngnlelvklLl.egadpn..k..ngktaLhyAakngnl.eivklLleh......adndgrtpLhyAarsghleivklLlekgadinlk 82 
                 a  +g  e+ +lLl +gad+n     +g+t+Lh+Aa +g+   ++++L ++      +d++g tpLh+A+r g ++ ++ Lle gad+ + 
  KOO23176.1 117 AGrYGGVEVARLLLkHGADLNatIeaDGLTPLHIAAAGGKAfRLLEWLASKgahvnaMDRSGATPLHAAVRAGLPREARALLEAGADPSVP 207
                 33356689******9******86268*************6556689999856666666699************9999*****9****9875 PP

>> Ank_3  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.0       1.1   3.9e+03       2      23 ..      21      42 ..      20      46 .. 0.78
   2 !    9.7   0.0   0.00039       1.4       5      31 .]      67      94 ..      63      94 .. 0.85
   3 ?   -2.9   0.1       4.9   1.8e+04       2      10 ..      99     107 ..      98     111 .. 0.72
   4 !    9.0   0.0   0.00069       2.5      11      31 .]     119     138 ..     115     138 .. 0.85
   5 !   15.8   0.0   4.3e-06     0.015       1      31 []     143     173 ..     143     173 .. 0.91
   6 !   17.7   0.0   9.6e-07    0.0035       2      30 ..     178     205 ..     177     206 .. 0.91

  Alignments for each domain:
  == domain 1  score: -0.9 bits;  conditional E-value: 1.1
       Ank_3  2 GetpLhlAarsgnleivkfLle 23
                G+  Lh  a++g +e +k  ++
  KOO23176.1 21 GRLSLHASAEQGLVEPLKVAIK 42
                7889999999999876776665 PP

  == domain 2  score: 9.7 bits;  conditional E-value: 0.00039
       Ank_3  5 pLhlAarsgnlei..vkfLlenkgadvna 31
                +LhlAa + + ++  v+ Lle +gad++a
  KOO23176.1 67 ALHLAACNWRGDLepVRVLLE-HGADPDA 94
                799999999998667******.9***985 PP

  == domain 3  score: -2.9 bits;  conditional E-value: 4.9
       Ank_3   2 GetpLhlAa 10 
                 G  +Lh+ a
  KOO23176.1  99 GLAALHILA 107
                 667899876 PP

  == domain 4  score: 9.0 bits;  conditional E-value: 0.00069
       Ank_3  11 rsgnleivkfLlenkgadvna 31 
                 r+g +e++++Ll+ +gad+na
  KOO23176.1 119 RYGGVEVARLLLK-HGADLNA 138
                 5667799******.9****96 PP

  == domain 5  score: 15.8 bits;  conditional E-value: 4.3e-06
       Ank_3   1 nGetpLhlAarsgnle.ivkfLlenkgadvna 31 
                 +G tpLh+Aa  g+   ++++L   kga vna
  KOO23176.1 143 DGLTPLHIAAAGGKAFrLLEWLAS-KGAHVNA 173
                 699************549******.9***996 PP

  == domain 6  score: 17.7 bits;  conditional E-value: 9.6e-07
       Ank_3   2 GetpLhlAarsgnleivkfLlenkgadvn 30 
                 G tpLh A+r+g +  +++Lle  gad+ 
  KOO23176.1 178 GATPLHAAVRAGLPREARALLE-AGADPS 205
                 89************55******.9***96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (301 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       811  (0.045234); expected 358.6 (0.02)
Passed bias filter:                      399  (0.0222544); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.47u 0.28s 00:00:00.75 Elapsed: 00:00:00.43
# Mc/sec: 2097.28
//
Query:       KOO23177.1  [L=475]
Description: major facilitator superfamily domain-containing protein 5-like protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.1e-73  246.3   2.9    5.6e-73  245.9   2.9    1.1  1  MFS_5     Sugar-tranasporters, 12 TM
    3.6e-09   36.0  34.1    1.5e-08   34.0  24.6    2.1  2  MFS_1     Major Facilitator Superfamily


Domain annotation for each model (and alignments):
>> MFS_5  Sugar-tranasporters, 12 TM
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  245.9   2.9   6.3e-77   5.6e-73      30     330 ..      27     333 ..      13     350 .. 0.92

  Alignments for each domain:
  == domain 1  score: 245.9 bits;  conditional E-value: 6.3e-77
       MFS_5  30 pkfkafkrtyllvyslavagdwlqgpyvyalyesygldkgdieilfiagfgssllfgtivgsladkfgrkracltyailyilacitkhsgeykvlmigr 128
                   +  +++ yl vy+lav gdw+qg + yaly  yg+++ +i  +fi g+ ss+ +gt+v +l d  g +r+c+ y ily+ +c+  hs  ++ l++gr
  KOO23177.1  27 AVYLRLRNRYLSVYTLAVFGDWIQGGFAYALYAAYGYSQREISLIFIVGYASSMTIGTYVSALGDTGGHRRNCVAYGILYAASCVLCHSRSLPSLLLGR 125
                 55667899******************************************************************************************* PP

       MFS_5 129 vlggiatsllysafeswlvaehnkrgfddsllsivfskaiflgnslvaiiaglaanllaerlgfgp....vapfdlalsvlligaviilsswsenygdt 223
                 vlgg+a s+ly++feswl+ae + r +   lls  fs +  + n+  a++ag++ +l+ e l  ++       fd+a+  ll +  +  + w e ygd 
  KOO23177.1 126 VLGGVAYSILYTSFESWLIAEAEARRLPRVLLSRLFSFST-FCNAGSAVVAGMVGHLVIEVLPCASrnrfACAFDVAVVSLLGASLVAATRWGERYGD- 222
                 ***************************************9.678899***********999876542222567999999998888888999*******. PP

       MFS_5 224 sekkdlkesfkkaakaiaedekvallglvqslfegsmytfvllwtpals......andeeiphgyifaafmlasmlgssvaskllarklkvesymrivl 316
                  + +   es+ k+ ++i+    ++ lglv+s++e ++y fv+lwtpal        +  ++ hg +f+ fm++ m gs   s++l++ l + + +++v+
  KOO23177.1 223 -QLHSTGESLLKSYRTIRASRPLVALGLVNSFYEAALYVFVFLWTPALErrsrqgDGTSNMGHGLVFSIFMISKMAGSQA-SHVLSEYLSPGARLQLVF 319
                 .888899*****************************************8777744455789****************985.5***************** PP

       MFS_5 317 llaavtlslpvvan 330
                   +a++l  pv+++
  KOO23177.1 320 GGSALCLAAPVLTD 333
                 ***********995 PP

>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.0  24.6   1.6e-12   1.5e-08       4     320 ..      39     355 ..      36     357 .. 0.71
   2 !   12.0  12.5   7.8e-06      0.07      35     179 ..     285     425 ..     276     433 .. 0.81

  Alignments for each domain:
  == domain 1  score: 34.0 bits;  conditional E-value: 1.6e-12
       MFS_1   4 aaflsalarsilgpalplalaedlgispseigllltlyalgaavaslplGrlsdrfGrrr.vlllglllfalglllllfasslwlllvlrvlqGlgaga 101
                 ++ l+ ++ +i g ++  al  ++g+s  ei+l++ + ++ ++     +++l+d  G+rr ++  g+l  a++ +l+  + sl+ ll++rvl G+++++
  KOO23177.1  39 VYTLAVFGDWIQGGFAY-ALYAAYGYSQREISLIFIVGYASSMTIGTYVSALGDTGGHRRnCVAYGILYAASC-VLCH-SRSLPSLLLGRVLGGVAYSI 134
                 68899999999999999.999***************************************8999999988888.5555.255559************** PP

       MFS_1 102 lfpagaaliadwfpkeergrai.....gllsagfslGailgpllggllasslg......Wravfyilaivsllafvlfllllpeepperkrkspkeeek 189
                 l+++  +++ + +  ++ +r++     ++ + +++ +a+++ ++g l+++ l       + a+ + +a+vsll++ l+++  + e+   +  s+ e   
  KOO23177.1 135 LYTSFESWLIAEAEARRLPRVLlsrlfSFSTFCNAGSAVVAGMVGHLVIEVLPcasrnrF-ACAFDVAVVSLLGASLVAATRWGERYGDQLHSTGES-- 230
                 *********998888877777653332555555555556666666666688889999755.345666777777777788999999999999988777.. PP

       MFS_1 190 gtgpaplvpawkallkdpvlw.illialllfffgfsglltllply.lqevlgls.glllaglllallalvgail....allagrlsdrlgrrrrlllal 281
                       l++ ++ ++++++l  + l+ +++ ++ + +++ ++p +  +++   + g   +g   +l++ +++i+    +  +  ls  l++  rl l +
  KOO23177.1 231 -----LLKS-YRTIRASRPLVaLGLVNSFYEAALYVFVFLWTPALeRRSRQ--GdGTSNMG--HGLVFSIFMISkmagSQASHVLSEYLSPGARLQLVF 319
                 .....7888.99999999774456666666677777799999997422222..23344555..444444444551110555555556688888888888 PP

       MFS_1 282 lllllaalglallavtssavllllvlvliGf..glgfvfps 320
                 ++ +l++++ +l+  ++ ++     l+++Gf   lg+++p+
  KOO23177.1 320 GGSALCLAAPVLTDSYEYTL-----LAFCGFeaLLGIYWPT 355
                 88877777777777773333.....3333333256666666 PP

  == domain 2  score: 12.0 bits;  conditional E-value: 7.8e-06
       MFS_1  35 gllltlyalgaavaslplGrlsdrf..Grrrvlllglllfalglllllfasslw.lllvlrvlqGlgagalfpagaaliadwfpkeergraigllsagf 130
                 gl+++++++  +++s    +ls+ +  G+r  l++g  +++l++ +l+   s+  +ll++  + +l  g+++p++a l      + +r++ ++++ +  
  KOO23177.1 285 GLVFSIFMISKMAGSQASHVLSEYLspGARLQLVFGGSALCLAAPVLT--DSYEyTLLAFCGFEALL-GIYWPTIALLRCGSILDAQRASTMAVFRVLL 380
                 89**********************977788888888888888845555..77775566666666666.9****************************** PP

       MFS_1 131 slGailgpllggllasslgWravfyilaivsllafvlfllllpeepper 179
                 +l +il  +l+g l ++l    +f ++a+++ll+  l ++l  +e +++
  KOO23177.1 381 NLLVILVLPLAGGLPEAL----AFSLAAGMLLLCPALSGILRQAETSTH 425
                 **************9776....677777777777666555555555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (475 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       428  (0.0238719); expected 358.6 (0.02)
Passed bias filter:                      273  (0.0152267); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.51u 0.23s 00:00:00.74 Elapsed: 00:00:00.40
# Mc/sec: 3583.73
//
Query:       KOO23178.1  [L=398]
Description: cell cycle control protein 50b [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.5e-62  209.6   0.0    1.3e-61  208.6   0.0    1.5  1  CDC50     LEM3 (ligand-effect modulator 3) family / CDC50 fam
  ------ inclusion threshold ------
      0.078   13.5   1.1        1.5    9.4   0.4    2.3  2  DUF3899   Domain of unknown function (DUF3899)
       0.23   11.2   1.0         15    5.3   0.0    2.4  2  DUF2157   Predicted membrane protein (DUF2157)


Domain annotation for each model (and alignments):
>> CDC50  LEM3 (ligand-effect modulator 3) family / CDC50 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  208.6   0.0   2.2e-65   1.3e-61      13     279 ..      66     381 ..      53     382 .. 0.76

  Alignments for each domain:
  == domain 1  score: 208.6 bits;  conditional E-value: 2.2e-65
       CDC50  13 idYt.................secataaesekeaskekktCtvqftvpedlkapvyvyYeLtnfyQnhrryvkSrddsqlkgkaksslksssssdCepl 94 
                  dY                  ++c    + ++ ++ e + C +++t++e++++p+++yY+L nfyQnhrryv+Sr+d+ql g++++ l  + ++dC   
  KOO23178.1  66 ADYGrdassnstprggsgcciANC----NGNSWDRIELNPCYITLTIEETMTPPIFMYYQLANFYQNHRRYVRSRSDTQLVGDTTH-LAADLKEDCMYH 159
                 466644444444555432222222....233356677789********************************************54.333234479888 PP

       CDC50  95 etakekkekkkiiyPCGliAnslFNDtfslveessskltkvnltkkgIawksdkekkfknktkyealeevvkPpnWakk...peeteipelke....ne 186
                  +a+ +     +i+PCGli++s FNDtf+l++ +    t+v+l+++ Iaw+sd ++ f+n+++ ++ +++   + W++     + t+ + l      + 
  KOO23178.1 160 YSASWDGG--APINPCGLISWSWFNDTFALMRPD---GTPVTLEQDAIAWQSDLDTNFRNSVDGSSGRNFPMLAYWRNIsceADPTPGTGLAPrtpaQR 253
                 65555443..7*****************887775...4789******************9664444444444458844453322333333333666544 PP

       CDC50 187 dfivW..mrtAalptFrKlyrrindeedLkagtyevdienn...................................fpvksFkGtKsivlsttswlGgk 248
                 +  v     t ++  FrKly+rin+   L+agty+v+++n                                    +pv sF+G+K +vl+t sw+Gg+
  KOO23178.1 254 AACVSanAATPGVGCFRKLYARINE--PLPAGTYTVRVSNGvptntgnvtdinvlgphynwgypldnptpkvqrflYPVGSFSGHKTVVLTTISWIGGR 350
                 444430033445668*********9..************9778889999************************************************** PP

       CDC50 249 npflgiaYlvvGgiclvlaivflvthlikpr 279
                 n flg+aYlvvG++c+vla++f++++ ++pr
  KOO23178.1 351 NFFLGYAYLVVGIVCIVLAMTFFIKWRLSPR 381
                 ************************9998887 PP

>> DUF3899  Domain of unknown function (DUF3899)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.2   0.0     0.043   2.5e+02       5      21 ..      40      56 ..      10      59 .. 0.74
   2 ?    9.4   0.4   0.00025       1.5       5      38 ..     352     385 ..     349     392 .. 0.90

  Alignments for each domain:
  == domain 1  score: 2.2 bits;  conditional E-value: 0.043
     DUF3899  5 Fllglllliigillivl 21
                + lgl++l igi++iv+
  KOO23178.1 40 SGLGLIFLPIGIAIIVA 56
                44677777777777765 PP

  == domain 2  score: 9.4 bits;  conditional E-value: 0.00025
     DUF3899   5 FllglllliigillivlnsGfFdgfsygfrklkk 38 
                 F lg+++l++gi++ivl + fF  ++++ r l++
  KOO23178.1 352 FFLGYAYLVVGIVCIVLAMTFFIKWRLSPRDLGT 385
                 999*******************999998888775 PP

>> DUF2157  Predicted membrane protein (DUF2157)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.3   0.0    0.0026        15      35      57 ..      36      58 ..       6      66 .. 0.82
   2 ?    3.7   0.5    0.0083        49      35      54 ..     355     374 ..     344     380 .. 0.84

  Alignments for each domain:
  == domain 1  score: 5.3 bits;  conditional E-value: 0.0026
     DUF2157 35 leallvlGalllglGlilfvAan 57
                + ++++lG ++l +G+ ++vA+n
  KOO23178.1 36 VMLFSGLGLIFLPIGIAIIVASN 58
                78999****************99 PP

  == domain 2  score: 3.7 bits;  conditional E-value: 0.0083
     DUF2157  35 leallvlGalllglGlilfv 54 
                 + a lv+G+++++l++ +f+
  KOO23178.1 355 GYAYLVVGIVCIVLAMTFFI 374
                 678899************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (398 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       672  (0.0374812); expected 358.6 (0.02)
Passed bias filter:                      515  (0.0287244); expected 358.6 (0.02)
Passed Vit filter:                        58  (0.00323498); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.52u 0.26s 00:00:00.78 Elapsed: 00:00:00.42
# Mc/sec: 2823.04
//
Query:       KOO23179.1  [L=144]
Description: methionine-r-sulfoxide reductase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.4e-32  112.3   0.0    1.9e-32  111.9   0.0    1.2  1  SelR      SelR domain


Domain annotation for each model (and alignments):
>> SelR  SelR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  111.9   0.0     1e-36   1.9e-32       3     121 .]      11     142 ..       9     142 .. 0.85

  Alignments for each domain:
  == domain 1  score: 111.9 bits;  conditional E-value: 1e-36
                 HCTSHCCHHHHHHHTT-SSTTSSSTS.....S--SSCEEEETTTS-EEEECCCCE-STTSSSEESS-STTTTEEEEEEECT..........TSEEEEEE CS
        SelR   3 kkkLtpeqyevlrekgterpftgeye.....kekekGvyecavcgepLfssetkfdsgcGwpsFaeaikeeavkekkdtsl..........gmertevv 86 
                 ++kLtp q ++  +++ter+ftg  +     ++k+kG+++ a++g+pLf+s+tk++sg+GwpsF++ai++ av e++d +           g +rtev+
  KOO23179.1  11 EEKLTPFQRAISLSAATERSFTGMTTngyahDNKKKGTWAGAISGAPLFDSSTKYESGTGWPSFYAAIPG-AVVERPDPEDladrrramamGGVRTEVI 108
                 689****************9966544333337899**********************************9.5555555444366666666669****** PP

                 ETTCECEEEEEECTSSSSS.SEEEEE-CCCEEEEE CS
        SelR  87 cakcdahlGhvFedgpkpttgkrycinsvslkfkp 121
                  ak++ahlGhvF dgp+pt  kryc+n+ +++f+p
  KOO23179.1 109 DAKSGAHLGHVFPDGPAPT-YKRYCMNAGAMTFVP 142
                 *****************95.*************86 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (144 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       264  (0.0147247); expected 358.6 (0.02)
Passed bias filter:                      241  (0.0134419); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.27s 00:00:00.65 Elapsed: 00:00:00.43
# Mc/sec: 1009.35
//
Query:       KOO23180.1  [L=295]
Description: ham group protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    7.9e-73  243.9   0.0    9.9e-73  243.6   0.0    1.2  1  MOZ_SAS          MOZ/SAS family
    1.6e-20   72.4   0.6    3.9e-20   71.2   0.6    1.7  1  zf-MYST          MYST family zinc finger domain
      3e-05   24.3   0.0    5.5e-05   23.5   0.0    1.4  1  Acetyltransf_7   Acetyltransferase (GNAT) domain
    0.00082   19.6   0.0     0.0015   18.7   0.0    1.4  1  Acetyltransf_1   Acetyltransferase (GNAT) family
  ------ inclusion threshold ------
      0.028   14.4   0.0      0.054   13.5   0.0    1.4  1  FR47             FR47-like protein
       0.04   13.9   0.0      0.065   13.2   0.0    1.3  1  Acetyltransf_10  Acetyltransferase (GNAT) domain
       0.11   12.3   0.0       0.22   11.4   0.0    1.4  1  IF2_N            Translation initiation factor IF-2, N-termin


Domain annotation for each model (and alignments):
>> MOZ_SAS  MOZ/SAS family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  243.6   0.0   3.9e-76   9.9e-73      10     179 .]     115     284 ..      89     284 .. 0.93

  Alignments for each domain:
  == domain 1  score: 243.6 bits;  conditional E-value: 3.9e-76
     MOZ_SAS  10 eklsvfevdGekeklycqnLcllaklFldhktlyydvepFlfYvlteadeegah.ivGyFskekesaeeynlaCilvlPpyqrkgyGklliefsYeLsk 107
                  +l+++evdG+++k+ycq+LcllaklFldhktlyydv+pFlfYvl+e+d++ga+ ++GyFskek+sae++n+aCilvlP++qrkgyGklli+++Y+++ 
  KOO23180.1 115 ARLTLYEVDGSTAKVYCQCLCLLAKLFLDHKTLYYDVDPFLFYVLCEEDATGAEsLAGYFSKEKSSAEGNNIACILVLPQHQRKGYGKLLIDLAYHITL 213
                 6789**********************************************9976499****************************************** PP

     MOZ_SAS 108 rekkigtPekPlsdlgllsyrsywkeeilellkekekkkisieeisektgikeeDiistleelkllkyakgk 179
                 re+k+g+PekPlsdlg+ls+rsyw+e++le+l++ ++ ++si++++ +t+i+++Diistl++l+l++ +kg+
  KOO23180.1 214 REGKVGSPEKPLSDLGQLSFRSYWTEVLLEALRT-QRGNLSIKDLAASTAIRSDDIISTLQSLNLIRFWKGQ 284
                 ********************************98.5699****************************99975 PP

>> zf-MYST  MYST family zinc finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   71.2   0.6   1.5e-23   3.9e-20       1      52 [.      30      81 ..      30      83 .. 0.98

  Alignments for each domain:
  == domain 1  score: 71.2 bits;  conditional E-value: 1.5e-23
     zf-MYST  1 vkniekieiGeyeiktWYfSpYPeelankekLyvCefClkYmksakelerHk 52
                vkni+ ieiG+ye++tWYfSpYP+ +a +++Ly+C + lkY+k ++++ rH+
  KOO23180.1 30 VKNIKVIEIGRYEVDTWYFSPYPDVFAMQSRLYICPYSLKYFKRRDSYVRHL 81
                8**************************************************8 PP

>> Acetyltransf_7  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.5   0.0   2.2e-08   5.5e-05       6      49 ..     157     208 ..     152     245 .. 0.66

  Alignments for each domain:
  == domain 1  score: 23.5 bits;  conditional E-value: 2.2e-08
                     EEEEET.....TEEEEEEEEEEES.......TCTEEEEE-GGGTTSSHHHHHHHHT CS
  Acetyltransf_7   6 fVaedd.....gkivGfialslld.......aeitrlaVdpeyrgkGiGraLleaa 49 
                     +V+ ++     +   G+ +    +        +i ++ V+p++++kG+G+ L+++a
      KOO23180.1 157 YVLCEEdatgaESLAGYFS----KekssaegNNIACILVLPQHQRKGYGKLLIDLA 208
                     5543332444333335433....133455555666699***************951 PP

>> Acetyltransf_1  Acetyltransferase (GNAT) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.7   0.0     6e-07    0.0015      35      93 ..     157     216 ..     137     220 .. 0.73

  Alignments for each domain:
  == domain 1  score: 18.7 bits;  conditional E-value: 6e-07
                     EEEEEET....TEEEEEEEEEEEETTSTTEEEEEEEEESGGGTTSSHHHHHHHHHHHHHHHTT CS
  Acetyltransf_1  35 llvaeed....geliGfisllkipdekggvayieslaVspeyrgkGlGsaLlealeerareeg 93 
                     ++++eed    + l+G+ s  k      +   i  + V p++++kG+G++L++ + ++ ++eg
      KOO23180.1 157 YVLCEEDatgaESLAGYFSKEKSSA---EGNNIACILVLPQHQRKGYGKLLIDLAYHITLREG 216
                     3336666665555888886666555...45556679*****************9998888775 PP

>> FR47  FR47-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.0   2.1e-05     0.054      22      53 ..     184     214 ..     171     219 .. 0.82

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 2.1e-05
                 SSEEEEEE-GGG-SSSHHHHHHHHHHHHHHHS CS
        FR47  22 gelgalqvlpehrrrGlgsrlvkalakeiaer 53 
                   +  + vlp+h+r+G+g++l+  la++i  r
  KOO23180.1 184 NNIACILVLPQHQRKGYGKLLI-DLAYHITLR 214
                 568899************9997.578888764 PP

>> Acetyltransf_10  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.0   2.5e-05     0.065      40      77 ..     168     209 ..     141     219 .. 0.74

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 2.5e-05
  Acetyltransf_10  40 gkivGvielrdgs....hisllfVdpeyrgqGigkaLleave 77 
                      ++++G+ + +++s     i+ + V p+++++G+gk L++ + 
       KOO23180.1 168 ESLAGYFSKEKSSaegnNIACILVLPQHQRKGYGKLLIDLAY 209
                      566777744222235559*******************99775 PP

>> IF2_N  Translation initiation factor IF-2, N-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   8.4e-05      0.22       3      29 ..     251     276 ..     250     291 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 8.4e-05
       IF2_N   3 kirVyeLAkeLgvkskevikkLfkelG 29 
                 ++++++LA    ++s ++i +L ++l 
  KOO23180.1 251 NLSIKDLAASTAIRSDDIISTL-QSLN 276
                 579*******************.6685 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (295 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       443  (0.0247086); expected 358.6 (0.02)
Passed bias filter:                      410  (0.022868); expected 358.6 (0.02)
Passed Vit filter:                        54  (0.00301188); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.44u 0.24s 00:00:00.68 Elapsed: 00:00:00.40
# Mc/sec: 2226.81
//
Query:       KOO23181.1  [L=722]
Description: hypothetical protein Ctob_001803 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.2e-28  100.0   0.1    3.3e-28   98.6   0.0    1.7  2  DnaJ-X    X-domain of DnaJ-containing
    2.3e-24   85.3   1.8    4.2e-24   84.4   1.8    1.5  1  DnaJ      DnaJ domain
    0.00019   21.7   0.6    0.00089   19.6   0.0    2.4  2  ATG_C     Autophagy-related protein C terminal domain


Domain annotation for each model (and alignments):
>> DnaJ-X  X-domain of DnaJ-containing
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.2      0.58   3.5e+03       1      14 [.     337     350 ..     337     352 .. 0.90
   2 !   98.6   0.0   5.5e-32   3.3e-28      26     199 ..     393     585 ..     385     592 .. 0.81

  Alignments for each domain:
  == domain 1  score: -2.8 bits;  conditional E-value: 0.58
      DnaJ-X   1 qeereeeLakkLre 14 
                 q++re+eLa++L e
  KOO23181.1 337 QQKREVELALRLSE 350
                 89********9976 PP

  == domain 2  score: 98.6 bits;  conditional E-value: 5.5e-32
      DnaJ-X  26 e..etesFkkkleeeaesLkmesFGleilhtIGkiYknkAksflkskqkflglgglfs.......svkekgrvvkdtfktvssaldaqstmeelakeqe 115
                     ++++ ++++ ea++L   sFG  +l t+++ Y  +A ++l+ ++++lg++g+++       s++++   +   ++++ +a+++ st++e+a +q 
  KOO23181.1 393 AagADDRWASRIRAEAKELASVSFGECLLFTVAELYGCRADEYLGLHTSLLGVEGHLAairmfriSLQNHSAAASAGIRAAGAAVRTFSTVKEIADQQR 491
                 34589**************************************************99822222223455555566666666669999999999999998 PP

      DnaJ-X 116 kk...........keeekeeeeeteeelaemekkllgkvLaaawkgskfeIestlrevcdkvLkDksvdketrlkRAeaLkilGeifqkakrtek 199
                 k+           k + +   + t++ + +  ++ l  +L+a+w++s ++Ie+tl +v +k+++D+svd++trl+RA+aL+ +G if++ +  + 
  KOO23181.1 492 KEaaesaaaggetKPQGDPLGSLTPA-QLKATQENLPVFLEAIWHVSVVDIERTLTAVTHKLCRDHSVDESTRLQRAHALRRIGAIFMEEALAKG 585
                 889999*9999844444444455555.556677789***************************************************98766665 PP

>> DnaJ  DnaJ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   84.4   1.8     7e-28   4.2e-24       2      63 .]     212     273 ..     211     273 .. 0.99

  Alignments for each domain:
  == domain 1  score: 84.4 bits;  conditional E-value: 7e-28
                 HHHHHTSSTTG-HHHHHHHHHHHHHHHSTTTSCCHHHHHHHHHHHHHHHHHHTSHHHHHHHH CS
        DnaJ   2 yYeiLgvskdasedeIkkaYrklalkyHPDknpkdpeaeekFkeineAyevLsdpekRkqYD 63 
                 yY++Lgv +das+deIkkaY+k alk+HPDknp+d++++e+F++++eAy+vL d++ R++YD
  KOO23181.1 212 YYDLLGVRSDASTDEIKKAYYKRALKLHPDKNPGDKTKAEEFQKVSEAYQVLADATMRSRYD 273
                 9************************************************************9 PP

>> ATG_C  Autophagy-related protein C terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.6   0.0   1.5e-07   0.00089       5      85 ..      42     122 ..      40     132 .. 0.94
   2 ?   -2.2   0.1      0.93   5.6e+03      20      52 ..     619     651 ..     611     663 .. 0.66

  Alignments for each domain:
  == domain 1  score: 19.6 bits;  conditional E-value: 1.5e-07
       ATG_C   5 asqPedlreGlqqAysslskglksaaqtilavpsevaeskgakgavkavvravPvavlrPligateavsktlqGvrnqldp 85 
                 +++P++l  G++++ +s  kg  s    ++a+p+   +++g+ g++++++  +  av  P+ ga+ a+ ++  G+ n+ ++
  KOO23181.1  42 TRRPRNLLAGISSGAKSAIKGAVSGMVGLFAAPIVGGKENGVPGFFAGLATGIVGAVALPMTGAAVATLQIGRGLVNTAES 122
                 579************************************************************************999765 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 0.93
       ATG_C  20 sslskglksaaqtilavpsevaeskgakgavka 52 
                 +++++ +++ a ++ +++++ +e++g +ga+ a
  KOO23181.1 619 KKVTDMVNMIAPQFQSAAQQARENAGGAGAASA 651
                 556666777777777777777777666666654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (722 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       622  (0.0346924); expected 358.6 (0.02)
Passed bias filter:                      365  (0.0203581); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.59u 0.28s 00:00:00.87 Elapsed: 00:00:00.43
# Mc/sec: 5049.87
//
Query:       KOO23182.1  [L=248]
Description: phosphoribulokinase uridine kinase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.7e-08   33.3   0.0    3.6e-07   30.1   0.0    2.0  1  PRK       Phosphoribulokinase / Uridine kinase family
  ------ inclusion threshold ------
       0.21   11.7   0.0       0.48   10.5   0.0    1.6  1  DUF2594   Protein of unknown function (DUF2594)


Domain annotation for each model (and alignments):
>> PRK  Phosphoribulokinase / Uridine kinase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.1   0.0     4e-11   3.6e-07      55     187 ..      29     179 ..      11     184 .. 0.79

  Alignments for each domain:
  == domain 1  score: 30.1 bits;  conditional E-value: 4e-11
         PRK  55 rakekevsflspeandfdllyevlkelkegkkvdkpiYsheteeaap..dkeeliegadvlviEGlh...alydervaelldlkiyvdi.......... 138
                 r k+ +++f    a d d+l   l++l  g  vd+pi++++ +   p   +++ +++  +l++EG++   ++   +v +   +++++ +          
  KOO23182.1  29 RDKDGNLNFETLLAVDVDKLNADLQKLFTGTPVDTPIFNFVIGAPEPykTRRKQLAPGGMLIMEGIFclnPALTAQVDDASKFNVFIAPlspltlmdgs 127
                 4566788899999******************************9999877889999**********933334566699999999999872222222222 PP

         PRK 139 ...sidlelarklqRDiaeRGrsleavldsilrrkpdyvnyikpqfseadli 187
                     + ++l+r+++RD  +RG s    l++++ +++   + i p   ea+++
  KOO23182.1 128 tarEDYVRLIRRISRDYLHRGNSALHTLKKYASVREGELENIYPFAGEAEVV 179
                 221234899***************9999999988888778888888887776 PP

>> DUF2594  Protein of unknown function (DUF2594)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.0   5.4e-05      0.48      14      40 ..     183     209 ..     174     230 .. 0.91

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 5.4e-05
     DUF2594  14 tLaeEvaClKalltllLkalGqAdAGk 40 
                  L  E++ lK ++  +L+a+ +A+AG 
  KOO23182.1 183 SLLYEMNVLKRTVGPMLHAITKAEAGA 209
                 6778*********************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (248 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       329  (0.0183502); expected 358.6 (0.02)
Passed bias filter:                      324  (0.0180713); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.41u 0.28s 00:00:00.69 Elapsed: 00:00:00.42
# Mc/sec: 1781.85
//
Query:       KOO23183.1  [L=1291]
Description: protein nlrc3 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    7.8e-37  122.2  81.7     0.0022   17.9   0.1   28.4 32  LRR_6           Leucine Rich repeat
    8.8e-14   49.9   4.3         53    5.0   0.2   15.9 17  LRR_1           Leucine Rich Repeat
    1.9e-11   44.0  33.5       0.87   10.1   0.0   14.9 16  LRR_4           Leucine Rich repeats (2 copies)
    1.1e-05   25.6   3.5         76    3.7   0.0    8.4  9  SpoU_sub_bind   RNA 2'-O ribose methyltransferase substrate b
      2e-05   24.3   1.3      0.013   15.1   0.0    3.9  4  Metal_CEHH      Predicted metal binding domain
    0.00013   21.7  28.2          1    9.2   0.1   13.2 16  LRR_8           Leucine rich repeat
  ------ inclusion threshold ------
      0.078   12.3   0.0         11    5.1   0.0    2.3  2  FIBP            Acidic fibroblast growth factor binding (FIBP
      0.086   12.7   0.7    1.3e+02    2.4   0.0    4.0  4  DUF2202         Uncharacterized protein domain (DUF2202)
       0.37   11.2   2.6        7.4    7.0   0.2    2.9  2  TbpB_B_D        C-lobe and N-lobe beta barrels of Tf-binding 
        0.5   10.5   4.0    1.7e+02    2.4   0.0    4.9  4  Arm-DNA-bind_1  Bacteriophage lambda integrase, Arm DNA-bindi
       0.99    9.0   3.0    1.6e+02    1.9   0.1    4.0  4  PAD_M           Protein-arginine deiminase (PAD) middle domai


Domain annotation for each model (and alignments):
>> LRR_6  Leucine Rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   0.1       9.3   1.5e+04       6      11 ..      36      41 ..      35      42 .. 0.84
   2 !   10.9   0.2   0.00024      0.39       4      19 ..      62      77 ..      59      82 .. 0.89
   3 ?   -1.6   0.0       2.3   3.8e+03      11      24 .]      98     112 ..      98     112 .. 0.89
   4 !    9.1   0.0   0.00093       1.5       5      19 ..     172     186 ..     172     191 .. 0.91
   5 ?   -3.0   0.0         7   1.1e+04      14      24 .]     211     221 ..     211     221 .. 0.89
   6 ?    4.8   0.0     0.022        36       5      24 .]     232     251 ..     231     251 .. 0.96
   7 ?    4.0   0.0      0.04        66       1      12 [.     256     267 ..     256     267 .. 0.91
   8 ?    5.7   0.1     0.011        18       5      24 .]     294     313 ..     293     313 .. 0.96
   9 ?    4.0   0.0      0.04        66       1      12 [.     318     329 ..     318     329 .. 0.91
  10 ?    3.0   0.1     0.079   1.3e+02       5      16 ..     356     367 ..     355     368 .. 0.89
  11 ?   -0.7   0.1       1.3   2.1e+03      12      24 .]     406     418 ..     403     418 .. 0.88
  12 ?   -3.2   0.1       8.1   1.3e+04       5      19 ..     466     480 ..     466     482 .. 0.73
  13 ?   -1.5   0.0       2.3   3.8e+03      14      24 .]     505     515 ..     505     515 .. 0.91
  14 !    6.4   0.0    0.0066        11       5      24 .]     660     679 ..     660     679 .. 0.87
  15 !    9.1   0.0   0.00093       1.5       4      24 .]     689     709 ..     687     709 .. 0.90
  16 !   11.4   0.2   0.00017      0.28       5      24 .]     718     737 ..     715     737 .. 0.87
  17 !   14.3   0.0     2e-05     0.032       3      23 ..     746     766 ..     744     767 .. 0.90
  18 ?    1.9   0.1      0.18   2.9e+02       9      24 .]     783     798 ..     779     798 .. 0.92
  19 ?    4.8   0.0     0.021        34       1      12 [.     803     814 ..     803     821 .. 0.79
  20 !    6.4   0.0    0.0066        11       5      24 .]     843     862 ..     842     862 .. 0.96
  21 ?    3.0   0.0     0.078   1.3e+02       1      12 [.     867     878 ..     867     878 .. 0.90
  22 ?   -0.5   0.1         1   1.7e+03      12      24 .]     914     926 ..     911     926 .. 0.88
  23 ?    5.6   0.0     0.012        19      12      24 .]     981     993 ..     977     993 .. 0.85
  24 ?    1.9   0.0      0.18   2.9e+02       8      23 ..    1007    1022 ..    1002    1023 .. 0.85
  25 ?    5.8   0.4     0.011        17       4      16 ..    1031    1043 ..    1031    1044 .. 0.89
  26 !   12.2   0.1   9.1e-05      0.15       5      19 ..    1071    1085 ..    1070    1090 .. 0.91
  27 ?   -2.3   0.0       4.1   6.7e+03      14      24 .]    1110    1120 ..    1110    1120 .. 0.90
  28 ?    4.1   0.0     0.036        59       5      23 ..    1131    1149 ..    1131    1150 .. 0.83
  29 ?   -0.8   0.3       1.3   2.1e+03       5      16 ..    1159    1170 ..    1159    1172 .. 0.85
  30 !   17.9   0.1   1.4e-06    0.0022       5      24 .]    1201    1220 ..    1198    1220 .. 0.95
  31 !    8.3   0.0    0.0016       2.6       3      24 .]    1229    1250 ..    1227    1250 .. 0.91
  32 ?    0.6   0.2      0.49     8e+02       9      19 ..    1263    1273 ..    1263    1273 .. 0.92

  Alignments for each domain:
  == domain 1  score: -3.4 bits;  conditional E-value: 9.3
       LRR_6  6 teLdLs 11
                ++LdLs
  KOO23183.1 36 KSLDLS 41
                89***9 PP

  == domain 2  score: 10.9 bits;  conditional E-value: 0.00024
       LRR_6  4 hLteLdLsgNdIgDeG 19
                +Lt++dL+gN +gD G
  KOO23183.1 62 TLTSVDLRGNLLGDNG 77
                9*************99 PP

  == domain 3  score: -1.6 bits;  conditional E-value: 2.3
       LRR_6  11 sgNd.IgDeGaeaLa 24 
                 s+++ I+ +G++ +a
  KOO23183.1  98 SSCEtISPAGVQLIA 112
                 78999******9997 PP

  == domain 4  score: 9.1 bits;  conditional E-value: 0.00093
       LRR_6   5 LteLdLsgNdIgDeG 19 
                 Lt++dL+gN++ D+G
  KOO23183.1 172 LTSVDLRGNKLRDKG 186
                 8*************9 PP

  == domain 5  score: -3.0 bits;  conditional E-value: 7
       LRR_6  14 dIgDeGaeaLa 24 
                 +I+ +G++ +a
  KOO23183.1 211 NISPAGVKLIA 221
                 6999****997 PP

  == domain 6  score: 4.8 bits;  conditional E-value: 0.022
       LRR_6   5 LteLdLsgNdIgDeGaeaLa 24 
                 Lt+++L+ N++g eG +a++
  KOO23183.1 232 LTKVSLAKNELGEEGTKAIC 251
                 89**************9998 PP

  == domain 7  score: 4.0 bits;  conditional E-value: 0.04
       LRR_6   1 snthLteLdLsg 12 
                 +n +L+eLd+sg
  KOO23183.1 256 QNKTLKELDISG 267
                 599*******96 PP

  == domain 8  score: 5.7 bits;  conditional E-value: 0.011
       LRR_6   5 LteLdLsgNdIgDeGaeaLa 24 
                 Lt+L+L++N +g eG +a++
  KOO23183.1 294 LTKLSLAHNMLGEEGTKAIC 313
                 9**************99998 PP

  == domain 9  score: 4.0 bits;  conditional E-value: 0.04
       LRR_6   1 snthLteLdLsg 12 
                 +n +L+eLd+sg
  KOO23183.1 318 QNKTLKELDISG 329
                 599*******96 PP

  == domain 10  score: 3.0 bits;  conditional E-value: 0.079
       LRR_6   5 LteLdLsgNdIg 16 
                 Lt+ dLs N++ 
  KOO23183.1 356 LTSIDLSRNQLC 367
                 9********975 PP

  == domain 11  score: -0.7 bits;  conditional E-value: 1.3
       LRR_6  12 gNdIgDeGaeaLa 24 
                 gN+++ e a+ La
  KOO23183.1 406 GNQLDAESAKMLA 418
                 8*********998 PP

  == domain 12  score: -3.2 bits;  conditional E-value: 8.1
       LRR_6   5 LteLdLsgNdIgDeG 19 
                 Lt++ L g ++gDeG
  KOO23183.1 466 LTSVKLGGKKLGDEG 480
                 566666666799999 PP

  == domain 13  score: -1.5 bits;  conditional E-value: 2.3
       LRR_6  14 dIgDeGaeaLa 24 
                 +Ig +G++ +a
  KOO23183.1 505 NIGPAGVKLIA 515
                 79******997 PP

  == domain 14  score: 6.4 bits;  conditional E-value: 0.0066
       LRR_6   5 LteLdLsgNdIgDeGaeaLa 24 
                 Lt L + +N I DeG++a++
  KOO23183.1 660 LTDLYIWSNSIKDEGITAIC 679
                 67777779***********8 PP

  == domain 15  score: 9.1 bits;  conditional E-value: 0.00093
       LRR_6   4 hLteLdLsgNdIgDeGaeaLa 24 
                 +L +L++ +N+I+  Ga+a a
  KOO23183.1 689 KLAKLNVGDNNISPIGATAVA 709
                 7889*************9976 PP

  == domain 16  score: 11.4 bits;  conditional E-value: 0.00017
       LRR_6   5 LteLdLsgNdIgDeGaeaLa 24 
                 L +L+Ls+N + DeG+ a +
  KOO23183.1 718 LMALNLSSNSLKDEGVNAVC 737
                 779************97765 PP

  == domain 17  score: 14.3 bits;  conditional E-value: 2e-05
       LRR_6   3 thLteLdLsgNdIgDeGaeaL 23 
                 t+Lt+L+ s+N+Ig +Ga a 
  KOO23183.1 746 TKLTSLHFSYNGIGPVGANAV 766
                 79***************9765 PP

  == domain 18  score: 1.9 bits;  conditional E-value: 0.18
       LRR_6   9 dLsgNdIgDeGaeaLa 24 
                 +L+gN++g eG +aL+
  KOO23183.1 783 SLAGNELGEEGTKALC 798
                 599***********98 PP

  == domain 19  score: 4.8 bits;  conditional E-value: 0.021
       LRR_6   1 snthLteLdLsg 12 
                 +n +L+eLd+sg
  KOO23183.1 803 QNKTLKELDISG 814
                 599********8 PP

  == domain 20  score: 6.4 bits;  conditional E-value: 0.0066
       LRR_6   5 LteLdLsgNdIgDeGaeaLa 24 
                 Lt+L+L+ N++g eG +a++
  KOO23183.1 843 LTKLSLAKNEFGEEGTKAIC 862
                 9***************9998 PP

  == domain 21  score: 3.0 bits;  conditional E-value: 0.078
       LRR_6   1 snthLteLdLsg 12 
                 +n +L+eLd+sg
  KOO23183.1 867 QNKSLKELDISG 878
                 599*******96 PP

  == domain 22  score: -0.5 bits;  conditional E-value: 1
       LRR_6  12 gNdIgDeGaeaLa 24 
                 +N+++ e a+ La
  KOO23183.1 914 HNNLDAESAKLLA 926
                 9*********997 PP

  == domain 23  score: 5.6 bits;  conditional E-value: 0.012
       LRR_6  12 gNdIgDeGaeaLa 24 
                 +N++ D+G++a +
  KOO23183.1 981 HNNLKDDGVSAVC 993
                 9*********987 PP

  == domain 24  score: 1.9 bits;  conditional E-value: 0.18
       LRR_6    8 LdLsgNdIgDeGaeaL 23  
                  L+ + N Ig +Ga a 
  KOO23183.1 1007 LNFNNNSIGPVGANAV 1022
                  8999999*****9765 PP

  == domain 25  score: 5.8 bits;  conditional E-value: 0.011
       LRR_6    4 hLteLdLsgNdIg 16  
                  +Lt LdLs N++ 
  KOO23183.1 1031 TLTQLDLSNNQLC 1043
                  8*********975 PP

  == domain 26  score: 12.2 bits;  conditional E-value: 9.1e-05
       LRR_6    5 LteLdLsgNdIgDeG 19  
                  Lt++dL gN++gDeG
  KOO23183.1 1071 LTSVDLGGNKLGDEG 1085
                  9*************9 PP

  == domain 27  score: -2.3 bits;  conditional E-value: 4.1
       LRR_6   14 dIgDeGaeaLa 24  
                  +Ig +G++ +a
  KOO23183.1 1110 NIGPAGVQLIA 1120
                  79*****9997 PP

  == domain 28  score: 4.1 bits;  conditional E-value: 0.036
       LRR_6    5 LteLdLsgNdIgDeGaeaL 23  
                  Lt  +L gN++g +Ga  +
  KOO23183.1 1131 LTNMNLGGNKLGPAGAAVF 1149
                  56669**********9766 PP

  == domain 29  score: -0.8 bits;  conditional E-value: 1.3
       LRR_6    5 LteLdLsgNdIg 16  
                  L++ +Ls N + 
  KOO23183.1 1159 LKSINLSNNVLC 1170
                  89*******865 PP

  == domain 30  score: 17.9 bits;  conditional E-value: 1.4e-06
       LRR_6    5 LteLdLsgNdIgDeGaeaLa 24  
                  Lt+LdLs+N + DeG+ a +
  KOO23183.1 1201 LTALDLSSNRLKDEGVRAVC 1220
                  9***************9987 PP

  == domain 31  score: 8.3 bits;  conditional E-value: 0.0016
       LRR_6    3 thLteLdLsgNdIgDeGaeaLa 24  
                  t+L +L++  N Ig +G+++ a
  KOO23183.1 1229 TKLASLNMGQNSIGPVGVKSVA 1250
                  6899**************9876 PP

  == domain 32  score: 0.6 bits;  conditional E-value: 0.49
       LRR_6    9 dLsgNdIgDeG 19  
                  dLsgNd+g eG
  KOO23183.1 1263 DLSGNDMGEEG 1273
                  9******9888 PP

>> LRR_1  Leucine Rich Repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.2   0.0       1.6   2.6e+03       2      13 ..      63      74 ..      62      87 .. 0.83
   2 ?    0.6   0.0      0.86   1.4e+03       2      15 ..     172     185 ..     171     196 .. 0.82
   3 ?    0.8   0.0      0.73   1.2e+03       2      12 ..     260     270 ..     259     279 .. 0.81
   4 ?    0.8   0.0      0.75   1.2e+03       2      12 ..     322     332 ..     321     340 .. 0.81
   5 ?    3.4   0.0       0.1   1.7e+02       2      16 ..     356     369 ..     355     376 .. 0.82
   6 ?   -2.2   0.0       7.2   1.2e+04       2      19 ..     660     677 ..     659     680 .. 0.72
   7 ?   -1.8   0.0       5.3   8.6e+03       1      12 [.     689     700 ..     689     707 .. 0.79
   8 ?    2.3   0.0      0.25     4e+02       4      20 ..     720     736 ..     717     742 .. 0.82
   9 ?   -0.9   0.0       2.8   4.5e+03       1      13 [.     747     759 ..     747     769 .. 0.81
  10 ?    2.3   0.0      0.24   3.8e+02       2      18 ..     807     823 ..     806     826 .. 0.84
  11 ?    2.3   0.0      0.24   3.9e+02       1      17 [.     870     886 ..     870     890 .. 0.77
  12 ?   -1.9   0.0       5.6   9.1e+03       2      13 ..    1004    1015 ..    1003    1022 .. 0.74
  13 ?    5.0   0.2     0.032        53       2      16 ..    1032    1046 ..    1031    1052 .. 0.79
  14 ?    0.4   0.0         1   1.7e+03       2      15 ..    1071    1084 ..    1070    1094 .. 0.83
  15 ?    3.6   0.0     0.091   1.5e+02       2      13 ..    1159    1170 ..    1158    1178 .. 0.83
  16 ?    3.0   0.0      0.14   2.3e+02       2      19 ..    1201    1218 ..    1200    1225 .. 0.81
  17 ?   -1.4   0.0         4   6.5e+03       1      12 [.    1230    1241 ..    1230    1251 .. 0.81

  Alignments for each domain:
  == domain 1  score: -0.2 bits;  conditional E-value: 1.6
       LRR_1  2 LrhLdLsnnpll 13
                L++ dL++n l+
  KOO23183.1 63 LTSVDLRGNLLG 74
                999******985 PP

  == domain 2  score: 0.6 bits;  conditional E-value: 0.86
       LRR_1   2 LrhLdLsnnpllgl 15 
                 L++ dL++n l ++
  KOO23183.1 172 LTSVDLRGNKLRDK 185
                 899******99655 PP

  == domain 3  score: 0.8 bits;  conditional E-value: 0.73
       LRR_1   2 LrhLdLsnnpl 12 
                 L++Ld+s+  +
  KOO23183.1 260 LKELDISGEKF 270
                 9*****99766 PP

  == domain 4  score: 0.8 bits;  conditional E-value: 0.75
       LRR_1   2 LrhLdLsnnpl 12 
                 L++Ld+s+  +
  KOO23183.1 322 LKELDISGEKF 332
                 9*****99766 PP

  == domain 5  score: 3.4 bits;  conditional E-value: 0.1
       LRR_1   2 LrhLdLsnnpllglp 16 
                 L+++dLs+n+l   +
  KOO23183.1 356 LTSIDLSRNQLC-GI 369
                 89********94.44 PP

  == domain 6  score: -2.2 bits;  conditional E-value: 7.2
       LRR_1   2 LrhLdLsnnpllglppns 19 
                 L+ L++ +n++ + ++ +
  KOO23183.1 660 LTDLYIWSNSIKDEGITA 677
                 7789**9**996655555 PP

  == domain 7  score: -1.8 bits;  conditional E-value: 5.3
       LRR_1   1 nLrhLdLsnnpl 12 
                 +L +L++++n++
  KOO23183.1 689 KLAKLNVGDNNI 700
                 5778***99997 PP

  == domain 8  score: 2.3 bits;  conditional E-value: 0.25
       LRR_1   4 hLdLsnnpllglppnsf 20 
                  L+Ls+n+l + + n+ 
  KOO23183.1 720 ALNLSSNSLKDEGVNAV 736
                 69*******88877765 PP

  == domain 9  score: -0.9 bits;  conditional E-value: 2.8
       LRR_1   1 nLrhLdLsnnpll 13 
                 +L++L+ s+n ++
  KOO23183.1 747 KLTSLHFSYNGIG 759
                 79********875 PP

  == domain 10  score: 2.3 bits;  conditional E-value: 0.24
       LRR_1   2 LrhLdLsnnpllglppn 18 
                 L++Ld+s+  ++++++n
  KOO23183.1 807 LKELDISGDWFGNKGSN 823
                 9******9998777765 PP

  == domain 11  score: 2.3 bits;  conditional E-value: 0.24
       LRR_1   1 nLrhLdLsnnpllglpp 17 
                 +L++Ld+s+   +++++
  KOO23183.1 870 SLKELDISGDWSGNKGS 886
                 69*****9877665555 PP

  == domain 12  score: -1.9 bits;  conditional E-value: 5.6
       LRR_1    2 LrhLdLsnnpll 13  
                  L  L+ +nn+++
  KOO23183.1 1004 LAWLNFNNNSIG 1015
                  556999999984 PP

  == domain 13  score: 5.0 bits;  conditional E-value: 0.032
       LRR_1    2 LrhLdLsnnpllglp 16  
                  L+ LdLsnn+l g+ 
  KOO23183.1 1032 LTQLDLSNNQLCGID 1046
                  889********6654 PP

  == domain 14  score: 0.4 bits;  conditional E-value: 1
       LRR_1    2 LrhLdLsnnpllgl 15  
                  L++ dL++n l++ 
  KOO23183.1 1071 LTSVDLGGNKLGDE 1084
                  899******99654 PP

  == domain 15  score: 3.6 bits;  conditional E-value: 0.091
       LRR_1    2 LrhLdLsnnpll 13  
                  L++++Lsnn l 
  KOO23183.1 1159 LKSINLSNNVLC 1170
                  9********984 PP

  == domain 16  score: 3.0 bits;  conditional E-value: 0.14
       LRR_1    2 LrhLdLsnnpllglppns 19  
                  L+ LdLs+n+l + + ++
  KOO23183.1 1201 LTALDLSSNRLKDEGVRA 1218
                  889*******97766665 PP

  == domain 17  score: -1.4 bits;  conditional E-value: 4
       LRR_1    1 nLrhLdLsnnpl 12  
                  +L +L++++n++
  KOO23183.1 1230 KLASLNMGQNSI 1241
                  6789******98 PP

>> LRR_4  Leucine Rich repeats (2 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.0   0.2      0.19     3e+02       4      37 ..      36      74 ..      35      78 .. 0.57
   2 ?    0.7   0.0      0.47   7.7e+02       3      18 ..      63      78 ..      61      86 .. 0.84
   3 ?    2.9   0.0       0.1   1.7e+02       5      37 ..     146     183 ..     142     186 .. 0.64
   4 ?    4.3   0.0     0.036        58       3      32 ..     232     267 ..     231     274 .. 0.84
   5 !   10.1   0.0   0.00053      0.87       3      32 ..     294     329 ..     293     336 .. 0.87
   6 ?    0.8   0.0      0.45   7.3e+02       3      13 ..     356     366 ..     353     376 .. 0.67
   7 ?    1.8   0.2      0.23   3.7e+02       3      39 ..     660     703 ..     659     706 .. 0.64
   8 ?    3.7   0.4     0.054        87       6      37 ..     721     759 ..     716     764 .. 0.66
   9 ?    0.7   0.0      0.48   7.8e+02      19      32 ..     801     814 ..     783     819 .. 0.74
  10 !    7.7   0.0    0.0031         5       3      32 ..     843     878 ..     842     885 .. 0.83
  11 ?   -1.0   0.3       1.7   2.8e+03       3      11 ..    1004    1012 ..     976    1022 .. 0.51
  12 ?    3.9   2.0     0.048        77      25      36 ..    1032    1042 ..    1002    1051 .. 0.57
  13 ?    5.2   0.8     0.019        30       3      30 ..    1032    1076 ..    1031    1084 .. 0.57
  14 ?    1.3   0.0       0.3   4.9e+02       3      16 ..    1071    1084 ..    1069    1091 .. 0.78
  15 ?    1.3   0.0      0.32   5.2e+02      24      33 ..    1158    1167 ..    1130    1173 .. 0.66
  16 !    8.3   0.0    0.0019       3.1       3      36 ..    1201    1241 ..    1200    1247 .. 0.68

  Alignments for each domain:
  == domain 1  score: 2.0 bits;  conditional E-value: 0.19
                -EEE--SS---E-S-..HHH-TT....--EEE-.-S---- CS
       LRR_4  4 evLdLsnNqltdipl..leklpn....LkeLdLsgNnlit 37
                ++LdLsn  l+  +   +++l      L+++dL gN l++
  KOO23183.1 36 KSLDLSNKGLSFASAivIASLIGvngtLTSVDLRGN-LLG 74
                567777777776666442234444445777777555.554 PP

  == domain 2  score: 0.7 bits;  conditional E-value: 0.47
                --EEE--SS---E-S- CS
       LRR_4  3 LevLdLsnNqltdipl 18
                L+++dL++N l d ++
  KOO23183.1 63 LTSVDLRGNLLGDNGW 78
                8999999999999766 PP

  == domain 3  score: 2.9 bits;  conditional E-value: 0.1
                 EEE--SS---E-S-..HHH-TT....--EEE-.-S---- CS
       LRR_4   5 vLdLsnNqltdipl..leklpn....LkeLdLsgNnlit 37 
                 +LdLs+ +l   +   ++++ +    L+++dL gN +++
  KOO23183.1 146 TLDLSGKNLGVASAvvIASCISingaLTSVDLRGN-KLR 183
                 68888767776666554445555556888888666.554 PP

  == domain 4  score: 4.3 bits;  conditional E-value: 0.036
                 --EEE--SS---E-S-......HHH-TT--EEE-.- CS
       LRR_4   3 LevLdLsnNqltdipl......leklpnLkeLdLsg 32 
                 L++++L+ N l + +       le+++ LkeLd+sg
  KOO23183.1 232 LTKVSLAKNELGEEGTkaiceaLEQNKTLKELDISG 267
                 8999999999998777888766669999******98 PP

  == domain 5  score: 10.1 bits;  conditional E-value: 0.00053
                 --EEE--SS---E-S-......HHH-TT--EEE-.- CS
       LRR_4   3 LevLdLsnNqltdipl......leklpnLkeLdLsg 32 
                 L++L+L++N+l + +       le+++ LkeLd+sg
  KOO23183.1 294 LTKLSLAHNMLGEEGTkaiceaLEQNKTLKELDISG 329
                 9***********9888998777669999******98 PP

  == domain 6  score: 0.8 bits;  conditional E-value: 0.45
                 --EEE--SS-- CS
       LRR_4   3 LevLdLsnNql 13 
                 L+++dLs Nql
  KOO23183.1 356 LTSIDLSRNQL 366
                 45555555544 PP

  == domain 7  score: 1.8 bits;  conditional E-value: 0.23
                 --EEE--SS---E-S-...HH...H-TT..--EEE-.-S-----G CS
       LRR_4   3 LevLdLsnNqltdipl...le...klpn..LkeLdLsgNnlitdl 39 
                 L+ L++ +N ++d +    ++   +++   L +L++ g n+i+++
  KOO23183.1 660 LTDLYIWSNSIKDEGItaiCNavqGNKEskLAKLNV-GDNNISPI 703
                 788888888888877655533554355566888888.44456555 PP

  == domain 8  score: 3.7 bits;  conditional E-value: 0.054
                 EE--SS---E-S-...HH...H-TT..--EEE-.-S---- CS
       LRR_4   6 LdLsnNqltdipl...le...klpn..LkeLdLsgNnlit 37 
                 L+Ls+N l+d +    +e   +++   L++L+ s N  i+
  KOO23183.1 721 LNLSSNSLKDEGVnavCEaiqSNKEtkLTSLHFSYN-GIG 759
                 899999999877766622443344455888888777.555 PP

  == domain 9  score: 0.7 bits;  conditional E-value: 0.48
                 HHH-TT--EEE-.- CS
       LRR_4  19 leklpnLkeLdLsg 32 
                 le+++ LkeLd+sg
  KOO23183.1 801 LEQNKTLKELDISG 814
                 667899*****988 PP

  == domain 10  score: 7.7 bits;  conditional E-value: 0.0031
                 --EEE--SS---E-S-......HHH-TT--EEE-.- CS
       LRR_4   3 LevLdLsnNqltdipl......leklpnLkeLdLsg 32 
                 L++L+L+ N   + +       le++++LkeLd+sg
  KOO23183.1 843 LTKLSLAKNEFGEEGTkaiceaLEQNKSLKELDISG 878
                 8999999999998777887667779*********87 PP

  == domain 11  score: -1.0 bits;  conditional E-value: 1.7
                  --EEE--SS CS
       LRR_4    3 LevLdLsnN 11  
                  L  L+++nN
  KOO23183.1 1004 LAWLNFNNN 1012
                  222333333 PP

  == domain 12  score: 3.9 bits;  conditional E-value: 0.048
                  --EEE-.-S--- CS
       LRR_4   25 LkeLdLsgNnli 36  
                  L++LdL +Nn++
  KOO23183.1 1032 LTQLDL-SNNQL 1042
                  677777.44455 PP

  == domain 13  score: 5.2 bits;  conditional E-value: 0.019
                  --EEE--SS-................--E-S-.HHH-TT--EEE- CS
       LRR_4    3 LevLdLsnNq................ltdipl.leklpnLkeLdL 30  
                  L+ LdLsnNq                +t i   l+ +  L+++dL
  KOO23183.1 1032 LTQLDLSNNQlcgidqnhsgtynaegITAIAYaLRVNGALTSVDL 1076
                  788888888855555555555555555555555443444555555 PP

  == domain 14  score: 1.3 bits;  conditional E-value: 0.3
                  --EEE--SS---E- CS
       LRR_4    3 LevLdLsnNqltdi 16  
                  L+++dL++N+l d 
  KOO23183.1 1071 LTSVDLGGNKLGDE 1084
                  78888888888875 PP

  == domain 15  score: 1.3 bits;  conditional E-value: 0.32
                  T--EEE-.-S CS
       LRR_4   24 nLkeLdLsgN 33  
                   Lk+++Ls+N
  KOO23183.1 1158 ALKSINLSNN 1167
                  4777777555 PP

  == domain 16  score: 8.3 bits;  conditional E-value: 0.0019
                  --EEE--SS---E-S-...HH...H-TT..--EEE-.-S--- CS
       LRR_4    3 LevLdLsnNqltdipl...le...klpn..LkeLdLsgNnli 36  
                  L+ LdLs+N+l+d +    +e   +++   L +L++ +N  i
  KOO23183.1 1201 LTALDLSSNRLKDEGVravCEaiqSNKEtkLASLNMGQN-SI 1241
                  999**********88855522454344455888888555.44 PP

>> SpoU_sub_bind  RNA 2'-O ribose methyltransferase substrate binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.7   0.0     0.046        76       4      44 ..     216     259 ..     215     264 .. 0.66
   2 ?    2.4   0.0      0.12     2e+02       3      21 ..     245     263 ..     244     274 .. 0.86
   3 ?    2.4   0.0      0.11   1.9e+02       3      21 ..     307     325 ..     307     344 .. 0.86
   4 ?   -1.9   0.0       2.7   4.3e+03       3      42 ..     384     423 ..     384     428 .. 0.61
   5 ?   -0.5   0.0      0.95   1.6e+03       4      45 ..     510     554 ..     509     555 .. 0.75
   6 ?    3.5   0.0     0.053        87       3      21 ..     731     751 ..     731     760 .. 0.81
   7 ?    0.2   0.0      0.58   9.5e+02       3      21 ..     792     810 ..     792     819 .. 0.90
   8 ?    2.2   0.0      0.14   2.3e+02       3      21 ..     856     874 ..     856     885 .. 0.87
   9 ?    1.9   0.0      0.17   2.7e+02       3      21 ..    1214    1234 ..    1214    1244 .. 0.78

  Alignments for each domain:
  == domain 1  score: 3.7 bits;  conditional E-value: 0.046
  SpoU_sub_bind   4 GlhaVleaLksgrr..iekllvtegradkr.leellklakkrgi 44 
                    G++++ eaL+      ++k+ +++++ +++ ++ ++++++++++
     KOO23183.1 216 GVKLIAEALRTSVTggLTKVSLAKNELGEEgTKAICEALEQNKT 259
                    77788888888777788888888886555545666666655543 PP

  == domain 2  score: 2.4 bits;  conditional E-value: 0.12
  SpoU_sub_bind   3 yGlhaVleaLksgrriekl 21 
                    +G++a+ eaL++++ +++l
     KOO23183.1 245 EGTKAICEALEQNKTLKEL 263
                    8************999887 PP

  == domain 3  score: 2.4 bits;  conditional E-value: 0.11
  SpoU_sub_bind   3 yGlhaVleaLksgrriekl 21 
                    +G++a+ eaL++++ +++l
     KOO23183.1 307 EGTKAICEALEQNKTLKEL 325
                    8************999987 PP

  == domain 4  score: -1.9 bits;  conditional E-value: 2.7
  SpoU_sub_bind   3 yGlhaVleaLksgrriekllvtegradkrleellklakkr 42 
                    +G+ a+  aL+ +  ++   +  ++ d++  ++l++ +k+
     KOO23183.1 384 EGITAITNALRVNGGLTVTNLLGNQLDAESAKMLAEVAKQ 423
                    7999999999998664444444444455555666665554 PP

  == domain 5  score: -0.5 bits;  conditional E-value: 0.95
  SpoU_sub_bind   4 GlhaVleaLksgrr..iekllvtegradkr.leellklakkrgik 45 
                    G++++ eaL+      ++   + +++ d++  + l++ ak++gi+
     KOO23183.1 510 GVKLIAEALHTSVTgsLTVANLLRNELDAEsAKMLVQVAKQKGIS 554
                    899999***998777777776777755555257888999998986 PP

  == domain 6  score: 3.5 bits;  conditional E-value: 0.053
  SpoU_sub_bind   3 yGlhaVleaLksgrr..iekl 21 
                    +G++aV ea++s+++  +++l
     KOO23183.1 731 EGVNAVCEAIQSNKEtkLTSL 751
                    8************88666665 PP

  == domain 7  score: 0.2 bits;  conditional E-value: 0.58
  SpoU_sub_bind   3 yGlhaVleaLksgrriekl 21 
                    +G++a  eaL++++ +++l
     KOO23183.1 792 EGTKALCEALEQNKTLKEL 810
                    7***********9988876 PP

  == domain 8  score: 2.2 bits;  conditional E-value: 0.14
  SpoU_sub_bind   3 yGlhaVleaLksgrriekl 21 
                    +G++a+ eaL++++ +++l
     KOO23183.1 856 EGTKAICEALEQNKSLKEL 874
                    8************998887 PP

  == domain 9  score: 1.9 bits;  conditional E-value: 0.17
  SpoU_sub_bind    3 yGlhaVleaLksgrr..iekl 21  
                     +G++aV ea++s+++  + +l
     KOO23183.1 1214 EGVRAVCEAIQSNKEtkLASL 1234
                     7***********987555555 PP

>> Metal_CEHH  Predicted metal binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.2   0.0      0.41   6.7e+02      87     119 ..     399     431 ..     389     441 .. 0.83
   2 ?    4.7   0.0     0.012        20      60     122 ..     500     561 ..     493     565 .. 0.79
   3 !   15.1   0.0   8.2e-06     0.013      59     119 ..     565     625 ..     557     636 .. 0.91
   4 ?   -1.0   0.0      0.71   1.2e+03      91     125 ..     911     945 ..     903     997 .. 0.88

  Alignments for each domain:
  == domain 1  score: -0.2 bits;  conditional E-value: 0.41
  Metal_CEHH  87 lllkmlrrpqlketspemistliqqkalsladl 119
                 l++  l  +ql+  s++m++ +++qk +sl  +
  KOO23183.1 399 LTVTNLLGNQLDAESAKMLAEVAKQKDISLCGI 431
                 5666677899*******************9765 PP

  == domain 2  score: 4.7 bits;  conditional E-value: 0.012
  Metal_CEHH  60 dftnydlrppsvvfvdpftrralarkdlllkmlrrpqlketspemistliqqkalsladllqa 122
                 d +  ++ p  v ++    +++++  +l++  l r++l+  s++m+ ++++qk +sl  +l+ 
  KOO23183.1 500 DACSENIGPAGVKLIAEALHTSVT-GSLTVANLLRNELDAESAKMLVQVAKQKGISLCGILRD 561
                 555566667777777777777765.5788889999**********************998865 PP

  == domain 3  score: 15.1 bits;  conditional E-value: 8.2e-06
  Metal_CEHH  59 ldftnydlrppsvvfvdpftrralarkdlllkmlrrpqlketspemistliqqkalsladl 119
                  df+n  l+pp  +++     +a+ + +l++  l  +ql+  s++m++ +++qk +sl  +
  KOO23183.1 565 ADFSNQKLKPPDAILLASDLSQAVVTGSLTVTNLLGNQLDVKSAKMLAEVAKQKGISLCGI 625
                 6********************************************************9765 PP

  == domain 4  score: -1.0 bits;  conditional E-value: 0.71
  Metal_CEHH  91 mlrrpqlketspemistliqqkalsladllqansa 125
                  l +++l+  s+++++ +++qk +sl  +l+ +++
  KOO23183.1 911 NLLHNNLDAESAKLLAEVAKQKGISLCGILRDQTT 945
                 56678999999999999999999999999876654 PP

>> LRR_8  Leucine rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.2         1   1.6e+03      24      41 ..      32      49 ..      23      73 .. 0.55
   2 ?   -2.3   0.0       2.4     4e+03       3      13 ..      63      73 ..      61      80 .. 0.72
   3 ?   -0.2   0.0      0.55   8.9e+02      23      60 ..     140     181 ..     131     182 .. 0.48
   4 ?   -1.5   0.0       1.4   2.2e+03      21      34 ..     254     267 ..     231     271 .. 0.63
   5 ?    0.5   0.1      0.33   5.4e+02      27      37 ..     294     304 ..     291     332 .. 0.53
   6 ?    1.3   0.1      0.18   2.9e+02      26      37 ..     355     366 ..     352     371 .. 0.67
   7 ?   -1.9   0.0       1.9     3e+03       3      14 ..     660     671 ..     659     674 .. 0.83
   8 !    9.2   0.1   0.00063         1       2      38 ..     689     729 ..     688     735 .. 0.85
   9 ?   -2.6   0.0       2.9   4.7e+03      26      37 ..     747     758 ..     745     769 .. 0.66
  10 ?   -3.1   0.0       4.2   6.8e+03      23      33 ..     803     813 ..     799     815 .. 0.54
  11 ?   -0.1   0.1       0.5   8.2e+02      20      33 ..     864     877 ..     841     879 .. 0.54
  12 !    6.6   0.5    0.0039       6.4      25      61 .]    1002    1042 ..     972    1042 .. 0.86
  13 ?   -2.6   0.0         3   4.9e+03       3      13 ..    1071    1081 ..    1069    1083 .. 0.48
  14 ?    3.5   0.4     0.037        60      24      39 ..    1156    1171 ..    1129    1176 .. 0.65
  15 ?    3.2   0.0     0.047        76      27      37 ..    1201    1211 ..    1196    1217 .. 0.65
  16 ?   -2.5   0.0       2.7   4.4e+03      26      37 ..    1230    1241 ..    1227    1245 .. 0.71

  Alignments for each domain:
  == domain 1  score: -1.1 bits;  conditional E-value: 1
                -TT--EEE--SS---GGG CS
       LRR_8 24 lsnLkvLdLsnNllttls 41
                 + +k+LdLsn  l++ s
  KOO23183.1 32 TEPVKSLDLSNKGLSFAS 49
                555666666665444444 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 2.4
                -SEEE-TTS-- CS
       LRR_8  3 LtsLdLsnNrl 13
                Lts+dL+ N l
  KOO23183.1 63 LTSVDLRGNLL 73
                77777777776 PP

  == domain 3  score: -0.2 bits;  conditional E-value: 0.55
                 T-TT--EEE--SS---GGGGGGGTT-....-S-.EEE--SS- CS
       LRR_8  23 glsnLkvLdLsnNllttlspgafsgL....psLrsLdLsgNr 60 
                 g  ++ +LdLs  +l + s+ +++++     +L+s dL+gN+
  KOO23183.1 140 GTDSVDTLDLSGKNLGVASAVVIASCisinGALTSVDLRGNK 181
                 555555566655555544443333321111345555555555 PP

  == domain 4  score: -1.5 bits;  conditional E-value: 1.4
                 STT-TT--EEE--S CS
       LRR_8  21 FkglsnLkvLdLsn 34 
                  ++++ Lk+Ld+s 
  KOO23183.1 254 LEQNKTLKELDISG 267
                 34455666666654 PP

  == domain 5  score: 0.5 bits;  conditional E-value: 0.33
                 --EEE--SS-- CS
       LRR_8  27 LkvLdLsnNll 37 
                 L+ L+L +N l
  KOO23183.1 294 LTKLSLAHNML 304
                 55555555544 PP

  == domain 6  score: 1.3 bits;  conditional E-value: 0.18
                 T--EEE--SS-- CS
       LRR_8  26 nLkvLdLsnNll 37 
                 +L+++dLs+N+l
  KOO23183.1 355 GLTSIDLSRNQL 366
                 466666666665 PP

  == domain 7  score: -1.9 bits;  conditional E-value: 1.9
                 -SEEE-TTS--S CS
       LRR_8   3 LtsLdLsnNrlt 14 
                 Lt L++++N+++
  KOO23183.1 660 LTDLYIWSNSIK 671
                 889999999986 PP

  == domain 8  score: 9.2 bits;  conditional E-value: 0.00063
                 T-SEEE-TTS--SEE-TTSSTT-....TT--EEE--SS--- CS
       LRR_8   2 nLtsLdLsnNrltslddeaFkgl....snLkvLdLsnNllt 38 
                 +L +L++ +N+++ ++ +a   +    s+L+ L+Ls+N+l+
  KOO23183.1 689 KLAKLNVGDNNISPIGATAVAAMvavtSGLMALNLSSNSLK 729
                 799999999999999999988765555899********997 PP

  == domain 9  score: -2.6 bits;  conditional E-value: 2.9
                 T--EEE--SS-- CS
       LRR_8  26 nLkvLdLsnNll 37 
                 +L++L+ s+N +
  KOO23183.1 747 KLTSLHFSYNGI 758
                 456666666644 PP

  == domain 10  score: -3.1 bits;  conditional E-value: 4.2
                 T-TT--EEE-- CS
       LRR_8  23 glsnLkvLdLs 33 
                 +++ Lk+Ld+s
  KOO23183.1 803 QNKTLKELDIS 813
                 45556666665 PP

  == domain 11  score: -0.1 bits;  conditional E-value: 0.5
                 SSTT-TT--EEE-- CS
       LRR_8  20 aFkglsnLkvLdLs 33 
                 a +++++Lk+Ld+s
  KOO23183.1 864 ALEQNKSLKELDIS 877
                 33334455555544 PP

  == domain 12  score: 6.6 bits;  conditional E-value: 0.0039
                  TT--EEE--SS---GGGGGGGTT--S....-.EEE--SS-- CS
       LRR_8   25 snLkvLdLsnNllttlspgafsgLps....LrsLdLsgNrL 61  
                  ++L +L+ +nN++  + ++a + + +    L++LdLs+N+L
  KOO23183.1 1002 TKLAWLNFNNNSIGPVGANAVAAMVAvtgtLTQLDLSNNQL 1042
                  57999999999999999999999987555589*******98 PP

  == domain 13  score: -2.6 bits;  conditional E-value: 3
                  -SEEE-TTS-- CS
       LRR_8    3 LtsLdLsnNrl 13  
                  Lts+dL  N+l
  KOO23183.1 1071 LTSVDLGGNKL 1081
                  44444444443 PP

  == domain 14  score: 3.5 bits;  conditional E-value: 0.037
                  -TT--EEE--SS---G CS
       LRR_8   24 lsnLkvLdLsnNlltt 39  
                  + +Lk+++LsnN l  
  KOO23183.1 1156 NGALKSINLSNNVLCG 1171
                  4679999999998855 PP

  == domain 15  score: 3.2 bits;  conditional E-value: 0.047
                  --EEE--SS-- CS
       LRR_8   27 LkvLdLsnNll 37  
                  L+ LdLs+N+l
  KOO23183.1 1201 LTALDLSSNRL 1211
                  55555555555 PP

  == domain 16  score: -2.5 bits;  conditional E-value: 2.7
                  T--EEE--SS-- CS
       LRR_8   26 nLkvLdLsnNll 37  
                  +L +L++++N++
  KOO23183.1 1230 KLASLNMGQNSI 1241
                  566777777766 PP

>> FIBP  Acidic fibroblast growth factor binding (FIBP)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.5   0.0     0.011        18     101     147 ..     400     446 ..     393     452 .. 0.89
   2 ?    5.1   0.0     0.007        11     100     147 ..     593     640 ..     584     646 .. 0.87

  Alignments for each domain:
  == domain 1  score: 4.5 bits;  conditional E-value: 0.011
        FIBP 101 vvreilgkklssrkrkdldevsektsvalkscrrqfdnvkrvfkvvE 147
                 +v ++lg++l +++ k l ev++++ ++l  ++r     + ++k +E
  KOO23183.1 400 TVTNLLGNQLDAESAKMLAEVAKQKDISLCGIQRDQTTANFLYKELE 446
                 6789*************************999998888888888776 PP

  == domain 2  score: 5.1 bits;  conditional E-value: 0.007
        FIBP 100 vvvreilgkklssrkrkdldevsektsvalkscrrqfdnvkrvfkvvE 147
                 ++v ++lg++l  ++ k l ev+++++++l  ++r     + ++k +E
  KOO23183.1 593 LTVTNLLGNQLDVKSAKMLAEVAKQKGISLCGIQRDQTTANFLYKGLE 640
                 67899*************************999998877777777665 PP

>> DUF2202  Uncharacterized protein domain (DUF2202)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.4   0.0     0.078   1.3e+02      76     102 ..     240     266 ..     220     274 .. 0.87
   2 ?    2.3   0.0     0.083   1.4e+02      74     102 ..     300     328 ..     289     336 .. 0.87
   3 ?    2.2   0.0     0.086   1.4e+02      76     102 ..     787     813 ..     780     820 .. 0.93
   4 ?   -1.1   0.0       0.9   1.5e+03      76     102 ..     851     877 ..     834     880 .. 0.83

  Alignments for each domain:
  == domain 1  score: 2.4 bits;  conditional E-value: 0.078
     DUF2202  76 nkLvekgsksledaLkvgatiedldia 102
                 n+L e+g k + +aL+   t+ +ldi+
  KOO23183.1 240 NELGEEGTKAICEALEQNKTLKELDIS 266
                 8999**********************7 PP

  == domain 2  score: 2.3 bits;  conditional E-value: 0.083
     DUF2202  74 lYnkLvekgsksledaLkvgatiedldia 102
                  +n L e+g k + +aL+   t+ +ldi+
  KOO23183.1 300 AHNMLGEEGTKAICEALEQNKTLKELDIS 328
                 5788999*********************7 PP

  == domain 3  score: 2.2 bits;  conditional E-value: 0.086
     DUF2202  76 nkLvekgsksledaLkvgatiedldia 102
                 n+L e+g k l +aL+   t+ +ldi+
  KOO23183.1 787 NELGEEGTKALCEALEQNKTLKELDIS 813
                 78999*********************7 PP

  == domain 4  score: -1.1 bits;  conditional E-value: 0.9
     DUF2202  76 nkLvekgsksledaLkvgatiedldia 102
                 n+  e+g k + +aL+    + +ldi+
  KOO23183.1 851 NEFGEEGTKAICEALEQNKSLKELDIS 877
                 7778999******************97 PP

>> TbpB_B_D  C-lobe and N-lobe beta barrels of Tf-binding protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.0   0.2    0.0045       7.4      95     134 ..     803     842 ..     774     844 .. 0.76
   2 ?    2.9   0.2     0.082   1.3e+02      94     134 ..     866     906 ..     846     908 .. 0.76

  Alignments for each domain:
  == domain 1  score: 7.0 bits;  conditional E-value: 0.0045
                 T-S-S-CEEEEEEEESTTT-EEEEEE.E-TTCEEEEEEEE CS
    TbpB_B_D  95 nsskkkdakveGgFYGpnAeELgGkfsesedkklggvFgA 134
                 ++++ k+ +++G ++G++++ +gG+  +++ +k+  v gA
  KOO23183.1 803 QNKTLKELDISGDWFGNKGSNIGGSAGAKHVAKMLDVNGA 842
                 3347788999***************977777777777666 PP

  == domain 2  score: 2.9 bits;  conditional E-value: 0.082
                 TT-S-S-CEEEEEEEESTTT-EEEEEE.E-TTCEEEEEEEE CS
    TbpB_B_D  94 ensskkkdakveGgFYGpnAeELgGkfsesedkklggvFgA 134
                 e++++ k+ +++G + G++++ +gG+  ++  +k+ gv gA
  KOO23183.1 866 EQNKSLKELDISGDWSGNKGSNIGGSAGAKYVAKMLGVNGA 906
                 333467889999**************988889999999998 PP

>> Arm-DNA-bind_1  Bacteriophage lambda integrase, Arm DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.4   0.0      0.11   1.7e+02      41      62 ..     241     262 ..     236     266 .. 0.91
   2 ?    2.3   0.0      0.12   1.9e+02      41      62 ..     303     324 ..     300     328 .. 0.90
   3 ?    0.3   0.0      0.49     8e+02      41      62 ..     788     809 ..     786     812 .. 0.91
   4 ?    1.2   0.0      0.26   4.2e+02      42      62 ..     853     873 ..     849     876 .. 0.90

  Alignments for each domain:
  == domain 1  score: 2.4 bits;  conditional E-value: 0.11
                     EEESSHHHHHHHHHHHHHHHTS CS
  Arm-DNA-bind_1  41 sLGtdereAieeAveaNtrlae 62 
                      LG++  +Ai eA+e N+ l e
      KOO23183.1 241 ELGEEGTKAICEALEQNKTLKE 262
                     69****************9976 PP

  == domain 2  score: 2.3 bits;  conditional E-value: 0.12
                     EEESSHHHHHHHHHHHHHHHTS CS
  Arm-DNA-bind_1  41 sLGtdereAieeAveaNtrlae 62 
                      LG++  +Ai eA+e N+ l e
      KOO23183.1 303 MLGEEGTKAICEALEQNKTLKE 324
                     59****************9976 PP

  == domain 3  score: 0.3 bits;  conditional E-value: 0.49
                     EEESSHHHHHHHHHHHHHHHTS CS
  Arm-DNA-bind_1  41 sLGtdereAieeAveaNtrlae 62 
                      LG++  +A  eA+e N+ l e
      KOO23183.1 788 ELGEEGTKALCEALEQNKTLKE 809
                     59****************9976 PP

  == domain 4  score: 1.2 bits;  conditional E-value: 0.26
                     EESSHHHHHHHHHHHHHHHTS CS
  Arm-DNA-bind_1  42 LGtdereAieeAveaNtrlae 62 
                     +G++  +Ai eA+e N+ l e
      KOO23183.1 853 FGEEGTKAICEALEQNKSLKE 873
                     89999************9976 PP

>> PAD_M  Protein-arginine deiminase (PAD) middle domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.7   0.0      0.11   1.9e+02      27      56 ..      73     102 ..      66     109 .. 0.84
   2 ?    0.6   0.0      0.24   3.9e+02      30      57 ..     185     212 ..     179     219 .. 0.90
   3 ?    1.9   0.1     0.096   1.6e+02      26      56 ..     475     505 ..     456     512 .. 0.86
   4 ?    0.5   0.1      0.25   4.1e+02      26      56 ..    1080    1110 ..    1073    1114 .. 0.83

  Alignments for each domain:
  == domain 1  score: 1.7 bits;  conditional E-value: 0.11
       PAD_M  27 wGpeGqGAilLvncdrddpkskkkdnedek 56 
                  G +G+GAi    c+++d k  + d++ e+
  KOO23183.1  73 LGDNGWGAIFAAICSNKDSKIMSLDSSCET 102
                 599************999998877776665 PP

  == domain 2  score: 0.6 bits;  conditional E-value: 0.24
       PAD_M  30 eGqGAilLvncdrddpkskkkdnedekv 57 
                 +G+GAi    c ++d k +++d ++e++
  KOO23183.1 185 KGWGAIFAAICHNKDSKISAMDASSENI 212
                 7******************999988876 PP

  == domain 3  score: 1.9 bits;  conditional E-value: 0.096
       PAD_M  26 twGpeGqGAilLvncdrddpkskkkdnedek 56 
                 + G eG+GAi    c ++d k  ++d  +e+
  KOO23183.1 475 KLGDEGWGAIFAAICGNKDSKIMSMDACSEN 505
                 789*************999999988877665 PP

  == domain 4  score: 0.5 bits;  conditional E-value: 0.25
       PAD_M   26 twGpeGqGAilLvncdrddpkskkkdnedek 56  
                  + G eG+GAi    c ++d k  + d ++e+
  KOO23183.1 1080 KLGDEGWGAIFAAICGNKDSKIMSLDASEEN 1110
                  6799***********9999887777766655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1291 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       515  (0.0287244); expected 358.6 (0.02)
Passed bias filter:                      382  (0.0213063); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                        13  (0.000725082); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.84u 0.29s 00:00:01.12 Elapsed: 00:00:00.46
# Mc/sec: 8489.80
//
Query:       KOO23184.1  [L=511]
Description: hypothetical protein Ctob_001813 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    7.2e-11   40.8   0.2    0.00025   20.4   0.0    3.0  2  EF-hand_1     EF hand
    1.5e-07   30.8   0.4     0.0077   16.1   0.1    3.3  4  EF-hand_6     EF-hand domain
    2.4e-07   31.1   1.1    9.8e-07   29.1   0.7    2.2  2  EF-hand_7     EF-hand domain pair
     0.0047   16.4   0.3       0.18   11.4   0.0    2.5  2  EF-hand_5     EF hand
     0.0067   16.2   4.0      0.073   12.9   0.3    3.5  4  EF-hand_8     EF-hand domain pair
  ------ inclusion threshold ------
      0.022   15.1   0.4      0.052   13.9   0.3    1.7  2  SPARC_Ca_bdg  Secreted protein acidic and rich in cysteine Ca


Domain annotation for each model (and alignments):
>> EF-hand_1  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.4   0.0   8.2e-08   0.00025       4      28 ..      31      55 ..      30      56 .. 0.94
   2 !   17.4   0.0   7.4e-07    0.0022       5      26 ..      66      87 ..      62      90 .. 0.88

  Alignments for each domain:
  == domain 1  score: 20.4 bits;  conditional E-value: 8.2e-08
                HHHHHHTTTSSSEEEHHHHHHHHHH CS
   EF-hand_1  4 eiFrefDkDgdGkIdfeEfkellkk 28
                +iF+e+D+D d +I+ +E+k++l+k
  KOO23184.1 31 RIFKEVDVDSDQTISCDELKSALQK 55
                69********************987 PP

  == domain 2  score: 17.4 bits;  conditional E-value: 7.4e-07
                HHHHHTTTSSSEEEHHHHHHHH CS
   EF-hand_1  5 iFrefDkDgdGkIdfeEfkell 26
                +++e+D D dG I+++E+++ +
  KOO23184.1 66 LMSELDLDSDGCITIDEWRKGF 87
                799****************987 PP

>> EF-hand_6  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.1   2.6e-06    0.0077       4      28 ..      31      55 ..      30      61 .. 0.92
   2 !   11.0   0.0   0.00011      0.34       8      25 ..      69      86 ..      62      90 .. 0.88
   3 ?   -3.9   0.0         6   1.8e+04      17      27 ..     124     134 ..     123     136 .. 0.84
   4 ?   -2.7   0.0       2.7     8e+03      15      27 ..     242     254 ..     242     258 .. 0.81

  Alignments for each domain:
  == domain 1  score: 16.1 bits;  conditional E-value: 2.6e-06
   EF-hand_6  4 eaFklfDkdgdGkidaeElrkalrk 28
                ++Fk+ D+d d +i+ +El++al+k
  KOO23184.1 31 RIFKEVDVDSDQTISCDELKSALQK 55
                58*********************95 PP

  == domain 2  score: 11.0 bits;  conditional E-value: 0.00011
   EF-hand_6  8 lfDkdgdGkidaeElrka 25
                ++D d dG+i+++E+rk 
  KOO23184.1 69 ELDLDSDGCITIDEWRKG 86
                79*************985 PP

  == domain 3  score: -3.9 bits;  conditional E-value: 6
   EF-hand_6  17 idaeElrkalr 27 
                 i+ ++l+++++
  KOO23184.1 124 ITGAQLQRVCS 134
                 89999*99886 PP

  == domain 4  score: -2.7 bits;  conditional E-value: 2.7
   EF-hand_6  15 GkidaeElrkalr 27 
                 G++  + +rka++
  KOO23184.1 242 GSLEESSFRKAMK 254
                 77888999**998 PP

>> EF-hand_7  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.1   0.7   3.3e-10   9.8e-07       6      67 ..      31      84 ..      30      88 .. 0.88
   2 ?   -1.8   0.0       1.5   4.4e+03      34      57 ..     443     465 ..     415     466 .. 0.64

  Alignments for each domain:
  == domain 1  score: 29.1 bits;  conditional E-value: 3.3e-10
   EF-hand_7  6 eaFkelDtdgdgyldkeellrllrkifqgagegsklsdeelellfkefDtdkdGvisfdEFl 67
                ++Fke D+d d  ++ +el+++l+        g +  d    +l+ e+D+d+dG+i+ dE +
  KOO23184.1 31 RIFKEVDVDSDQTISCDELKSALQ------KQGYD--DVVFATLMSELDLDSDGCITIDEWR 84
                57**********************......66666..55788*****************965 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 1.5
   EF-hand_7  34 gagegsklsdeelellfkefDtdk 57 
                 +   g k +++ + +lfk +++d+
  KOO23184.1 443 Q-LKGTKATEDGVTALFKHVNLDG 465
                 3.4555667778888888887775 PP

>> EF-hand_5  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.5   0.0     0.038   1.1e+02       5      22 ..      33      50 ..      31      53 .. 0.86
   2 !   11.4   0.0     6e-05      0.18       5      23 ..      67      85 ..      63      88 .. 0.86

  Alignments for each domain:
  == domain 1  score: 2.5 bits;  conditional E-value: 0.038
                HHHH-SS-SSCE-HHHHH CS
   EF-hand_5  5 FqaiDlNgDGkIskeELk 22
                F+++D++ D +Is +ELk
  KOO23184.1 33 FKEVDVDSDQTISCDELK 50
                9********999999987 PP

  == domain 2  score: 11.4 bits;  conditional E-value: 6e-05
                HHHH-SS-SSCE-HHHHHH CS
   EF-hand_5  5 FqaiDlNgDGkIskeELkt 23
                 +++Dl+ DG I+++E+++
  KOO23184.1 67 MSELDLDSDGCITIDEWRK 85
                6789*************98 PP

>> EF-hand_8  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.5   0.0    0.0024       7.3      31      55 .]      32      56 ..      31      56 .. 0.94
   2 !   12.9   0.3   2.4e-05     0.073       2      47 ..      41      82 ..      40      87 .. 0.90
   3 ?   -1.9   0.0         1   3.1e+03       3      15 ..     242     254 ..     241     261 .. 0.76
   4 ?    2.3   0.0     0.051   1.5e+02      18      39 ..     443     465 ..     422     466 .. 0.82

  Alignments for each domain:
  == domain 1  score: 6.5 bits;  conditional E-value: 0.0024
   EF-hand_8 31 lfrefDtdgdGkisfeEFcvllerr 55
                +f+e+D d d +is++E    l+++
  KOO23184.1 32 IFKEVDVDSDQTISCDELKSALQKQ 56
                7******************999986 PP

  == domain 2  score: 12.9 bits;  conditional E-value: 2.4e-05
   EF-hand_8  2 kgkItreelrrilrilglkkglseeevdilfrefDtdgdGkisfeE 47
                ++ I+ +el+++l   +++ g+ +  + +l++e+D+d dG i+ +E
  KOO23184.1 41 DQTISCDELKSAL---QKQ-GYDDVVFATLMSELDLDSDGCITIDE 82
                789********88...777.599999****************9887 PP

  == domain 3  score: -1.9 bits;  conditional E-value: 1
   EF-hand_8   3 gkItreelrrilr 15 
                 g++   ++r++++
  KOO23184.1 242 GSLEESSFRKAMK 254
                 7888899***993 PP

  == domain 4  score: 2.3 bits;  conditional E-value: 0.051
   EF-hand_8  18 glkk.glseeevdilfrefDtdg 39 
                 +lk+ + +e+ v++lf+++ +dg
  KOO23184.1 443 QLKGtKATEDGVTALFKHVNLDG 465
                 44445699999*********998 PP

>> SPARC_Ca_bdg  Secreted protein acidic and rich in cysteine Ca binding region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.3   1.8e-05     0.052      60     111 ..      33      84 ..      17      86 .. 0.86
   2 ?   -3.0   0.0       2.9   8.7e+03       3      34 ..     420     451 ..     420     464 .. 0.72

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 1.8e-05
  SPARC_Ca_bdg  60 FsklDtnsdkvlsksELaplraplvklehCikpflescDadkdkkislkEwc 111
                   F+++D++sd+++s  EL++  ++    +   ++++++ D+d+d+ i+  Ew 
    KOO23184.1  33 FKEVDVDSDQTISCDELKSALQKQGYDDVVFATLMSELDLDSDGCITIDEWR 84 
                   9****************9988777778888999******************6 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 2.9
  SPARC_Ca_bdg   3 eCteeelaelpeRlrdWlknlleelkereeek 34 
                   +Ct++el+ l + l + l+ l  +lk ++ ++
    KOO23184.1 420 KCTDKELQLLMAALPNSLESLNLQLKGTKATE 451
                   58899988888888888887777777766665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (511 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       478  (0.0266607); expected 358.6 (0.02)
Passed bias filter:                      465  (0.0259356); expected 358.6 (0.02)
Passed Vit filter:                        52  (0.00290033); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.55u 0.28s 00:00:00.83 Elapsed: 00:00:00.44
# Mc/sec: 3463.58
//
Query:       KOO23185.1  [L=244]
Description: hypothetical protein Ctob_001810 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.1e-14   52.3   0.1    3.3e-07   30.4   0.0    2.2  2  NIPSNAP   NIPSNAP


Domain annotation for each model (and alignments):
>> NIPSNAP  NIPSNAP
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.0   0.0   3.5e-08   0.00062      26      71 ..      14      59 ..       1      79 [. 0.72
   2 !   30.4   0.0   1.9e-11   3.3e-07       2     102 .]     139     242 ..     138     242 .. 0.88

  Alignments for each domain:
  == domain 1  score: 20.0 bits;  conditional E-value: 3.5e-08
                HHHHHHH--EEEEEEEEESB.SSEEEEEEEES-HHHHHHHHHHHHH- CS
     NIPSNAP 26 aiqekhggeliGyfaseiGa.lnqvlhlwaydslaarearraalaad 71
                 +       l+G++ +eiG   ++v hl+ ++s+++r ++   +a+ 
  KOO23185.1 14 SRKR-ASPGLLGMWKTEIGGsTSVVSHLYHWESFDERDKAQMLAADE 59
                4444.555699*********99999************9876555544 PP

  == domain 2  score: 30.4 bits;  conditional E-value: 1.9e-11
                 EEEEEEE-TT..-HHHHHHHHHHTHHHHHHH...HH--EEEEEEEEESBSSEEEEEEEES-HHHHHHHHHHHHH-HHHHHHHHHHHTT..EEEEEEEEE CS
     NIPSNAP   2 elrtYtlkpg..klaeflerfareiiaiqek...hggeliGyfaseiGalnqvlhlwaydslaarearraalaadpeweaavekavdldliksmesril 95 
                 e+r+Y+l+ g  ++++fle + ++ +   ++     +el    +s+ G+ln+v+ +w+ + l+a  a r+a++++ +w+aave+  +l    + e+ ++
  KOO23185.1 139 EMRKYQLQLGysTVPKFLELYGTGLQDKLAAddsGASELCTLLYSDCGSLNVVIEIWRHRTLEASLASRQASRKASKWRAAVEEIAAL--AHTFETAMM 235
                 899999998755789999999999875544322278999999**********************************************..999****** PP

                 EE-TT-S CS
     NIPSNAP  96 kptsfsp 102
                 +p++ sp
  KOO23185.1 236 RPLPSSP 242
                 **99887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (244 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       406  (0.0226449); expected 358.6 (0.02)
Passed bias filter:                      342  (0.0190752); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.26s 00:00:00.67 Elapsed: 00:00:00.41
# Mc/sec: 1768.56
//
Query:       KOO23186.1  [L=207]
Description: hypothetical protein Ctob_001811 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.11   13.2   0.0       0.15   12.8   0.0    1.2  1  DIOX_N    non-haem dioxygenase in morphine synthesis N-termin


Domain annotation for each model (and alignments):
>> DIOX_N  non-haem dioxygenase in morphine synthesis N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0   8.5e-06      0.15      41      84 ..      69     115 ..      31     144 .. 0.72

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 8.5e-06
      DIOX_N  41 eelidelfeaareFFalPeeeKekl...akspsfrGysrlgeektdg 84 
                 ++ i++ f+a+  FFa P eeK ++   a+ ++ +Gy ++ +    +
  KOO23186.1  69 ADTISACFRACGGFFARPFEEKTRHyagAHVGQAHGYMDYLADAEGS 115
                 4789999*****************97666667999999876655544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (207 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       403  (0.0224776); expected 358.6 (0.02)
Passed bias filter:                      301  (0.0167884); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.25s 00:00:00.65 Elapsed: 00:00:00.41
# Mc/sec: 1511.96
//
Query:       KOO23187.1  [L=501]
Description: hypothetical protein Ctob_001816 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
  ------ inclusion threshold ------
       0.11   11.4   0.0       0.16   10.9   0.0    1.2  1  Molybdopterin  Molybdopterin oxidoreductase


Domain annotation for each model (and alignments):
>> Molybdopterin  Molybdopterin oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   9.1e-06      0.16      35      86 ..     342     392 ..     334     406 .. 0.88

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 9.1e-06
                    HHHHHCSGGGEEEEEBTSSCSHHHHHHHHHHHHHTT-EEE-BEECCGGGTTH CS
  Molybdopterin  35 ytikkygpdrvagfssgplmsmeslaslkkllsllggknlsfydwyadlppa 86 
                    ++ + y+p ++a+++  +++  +s+as+++l +l+gg  + f++wy+d+ p+
     KOO23187.1 342 RVLEAYQP-SNALTYLEQYTPYISMASAATLGALYGGARGYFRGWYQDVTPS 392
                    56889999.9999***********************************9875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (501 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       413  (0.0230353); expected 358.6 (0.02)
Passed bias filter:                      351  (0.0195772); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.52u 0.28s 00:00:00.80 Elapsed: 00:00:00.45
# Mc/sec: 3374.53
//
Query:       KOO23188.1  [L=878]
Description: sialate o-acetylesterase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.8e-13   50.1   0.0    8.1e-08   32.2   0.0    2.5  2  SASA      Carbohydrate esterase, sialic acid-specific acetyle
    5.5e-12   45.3   6.4    5.3e-06   26.1   0.2    3.0  3  PQ-loop   PQ loop repeat


Domain annotation for each model (and alignments):
>> SASA  Carbohydrate esterase, sialic acid-specific acetylesterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.0   1.5e-06     0.013       3     101 ..     108     226 ..     106     233 .. 0.70
   2 !   32.2   0.0   9.1e-12   8.1e-08     102     222 ..     280     394 ..     268     398 .. 0.73

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 1.5e-06
        SASA   3 difllaGQSNmaGrGgvek................dgvvpeeckpnp.rilrlnadleweeAkePlhadidvkkvagvgp.glaFAkellk..ekskvv 81 
                 d++l++GQSNm+   + +                  ++v++ ++++p +    +a+ +w + +    a +  ++++ ++   + F++e+ k   + kv+
  KOO23188.1 108 DVYLCSGQSNMEFSVNAAFnstleiadsvnypdlrLATVQRAMSDKPeQDAPSKANYTWARSSPAAFAPAGGDNFSWFSAtCYFFGREVYKvlGNGKVP 206
                 8**********98655544678888877777777633333444444436666667777766554444444445677776515789******99999*** PP

        SASA  82 igLvpcAvGGtsieeWekge 101
                 igL++   GG s+e++++ e
  KOO23188.1 207 IGLIASDWGGQSVESFSSPE 226
                 *************9998654 PP

  == domain 2  score: 32.2 bits;  conditional E-value: 9.1e-12
        SASA 102 slYeelvkrakaalkkkikgiLWyQGEsDaekeedaeaYkekleklvedlrkdlgapdlpvivvqlasgekkfvevvreaqlskiklpnvavvda...k 197
                 +l+++++  ++       +g  WyQGE++ +++     Y+ ++ ++++d r+++g pdl +++vqla ++    + +r aq ++++lp+v +  a    
  KOO23188.1 280 QLWNAMIYPLRLMR---FTGATWYQGEANWADP---PGYSCRFPAMIADWRRQFGLPDLSFFYVQLAPYR-LDFSRFRLAQGAALQLPKVGFAVAidlG 371
                 66666666665544...78999*******7666...9*****************************9853.3455666666666666666655551116 PP

        SASA 198 glelkedklHlttesqvelGkrlAe 222
                 +l+   d +H     + e+G+rlA 
  KOO23188.1 372 DLTSPYDAIHPRR--KQEVGRRLAL 394
                 6777778888765..5678999886 PP

>> PQ-loop  PQ loop repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.0      0.38   3.4e+03       5      15 ..     182     192 ..     179     194 .. 0.82
   2 !   21.4   0.5   1.7e-08   0.00016       5      57 ..     560     612 ..     556     616 .. 0.90
   3 !   26.1   0.2   5.9e-10   5.3e-06      10      59 ..     702     751 ..     699     752 .. 0.92

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 0.38
     PQ-loop   5 lgyislvlwlv 15 
                 ++++s++++++
  KOO23188.1 182 FSWFSATCYFF 192
                 89******997 PP

  == domain 2  score: 21.4 bits;  conditional E-value: 1.7e-08
     PQ-loop   5 lgyislvlwlvsyiPQiikNykrkSteGlSilflllwllGdilsllylilngf 57 
                 +  ++l +++++ +PQ  k  k +S  G+S++++++ +++++l++   +++++
  KOO23188.1 560 VAVAALGFTVLVPLPQFFKLAKARSSAGVSLFTVIITMFSSMLNVGAALITKW 612
                 6678999*************************************988888877 PP

  == domain 3  score: 26.1 bits;  conditional E-value: 5.9e-10
     PQ-loop  10 lvlwlvsyiPQiikNykrkSteGlSilflllwllGdilsllylilngfpp 59 
                  +  lv y PQ++ +++++  + lS+l++ l+++G+ l++ ++i++g +p
  KOO23188.1 702 SLAALVHYAPQLLATWRHRASGSLSLLTYTLQVVGGYLNIYQSITQGVSP 751
                 5667899**************************************99876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (878 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       444  (0.0247643); expected 358.6 (0.02)
Passed bias filter:                      238  (0.0132746); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.64u 0.24s 00:00:00.88 Elapsed: 00:00:00.43
# Mc/sec: 6156.04
//
Query:       KOO23189.1  [L=338]
Description: alcohol dehydrogenase zinc-binding domain protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    9.6e-16   59.0   0.0    1.9e-15   58.1   0.0    1.4  1  ADH_zinc_N_2  Zinc-binding dehydrogenase
    4.9e-13   49.2   0.3    1.6e-12   47.5   0.1    1.9  2  ADH_zinc_N    Zinc-binding dehydrogenase
     0.0001   21.9   0.3    0.00019   21.0   0.1    1.4  2  Glu_dehyd_C   Glucose dehydrogenase C-terminus
     0.0076   16.1   1.9      0.017   15.0   1.8    1.6  1  ADH_N         Alcohol dehydrogenase GroES-like domain
  ------ inclusion threshold ------
      0.059   13.6   0.4       0.12   12.6   0.4    1.5  1  zf-RING_7     C4-type zinc ribbon domain


Domain annotation for each model (and alignments):
>> ADH_zinc_N_2  Zinc-binding dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.1   0.0   5.3e-19   1.9e-15       1     127 [.     192     323 ..     192     325 .. 0.75

  Alignments for each domain:
  == domain 1  score: 58.1 bits;  conditional E-value: 5.3e-19
                   TT-SEEEETTSTTHHHHH-TT-EEEEEES-HHHHH.HHHHHHEEEEEEEEE--.--...........S-EEE-CHHHCTTT-EEEE--GGG...-.- CS
  ADH_zinc_N_2   1 lGAdevidyrtedfeaatggegvDvvldtvggealleaslkvlpggGrlvsig.gpp..........lsaallkpakkrkgrsvkyeflfsmkasaq 86 
                   lGA+ v+dy++ d+   +  ++vD+v+d+ g e +++++++++++gG+++ +  g            l    ++++k  + r+++y +  + +a+  
    KOO23189.1 192 LGATYVVDYKQVDLFGTLPDDSVDIVYDNYGAEGTADKAMHAIRPGGTYLLLPhGECftkktqgppcL----SANPK-PGVRQLNYATGEEFEAF-A 282
                   8*********777777777899*********88888*******888***8877555588865542211....22222.33344444444444555.5 PP

                   HHHHHHHHHHHHHHH----EEEEEEGGGHHHHHHHHHSS-- CS
  ADH_zinc_N_2  87 adileelaalieeGklrpvvdrvfpleeaaeAhrylesgra 127
                    ++l+elaal+ +G lr +vdr+f+le+aa A+ y +   a
    KOO23189.1 283 LEALDELAALVRSGGLRATVDRSFSLEDAALAFNYSAGSGA 323
                   555*******************************9876655 PP

>> ADH_zinc_N  Zinc-binding dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.5   0.1   4.5e-16   1.6e-12       1      86 [.     159     241 ..     159     251 .. 0.91
   2 ?   -1.3   0.0      0.55     2e+03      21      67 ..     284     331 ..     270     338 .] 0.57

  Alignments for each domain:
  == domain 1  score: 47.5 bits;  conditional E-value: 4.5e-16
                 HHHHHHHHHHHHTT-.EEEEEESSHHHHHHHHHTTESEEEETTTCHHHHHHHHHTTTSSEEEEEESSCSHHHHHHHHHCEEEEEEEE CS
  ADH_zinc_N   1 gvGlaavqlAkalGa.eviavdsseeklelakklGadevinykeadlverikeltggegvdvvfecvGsgatleaalkllkpgGrlv 86 
                 g G++++qlAka+Ga ++ + +s +  + ++k+lGa++v++yk+   v+    l  ++ vd+v++  G++ t + a+ +++pgG+  
  KOO23189.1 159 GTGSIGIQLAKAWGAaHIATSASGDASINFVKSLGATYVVDYKQ---VDLFGTLP-DDSVDIVYDNYGAEGTADKAMHAIRPGGTYL 241
                 78*************888888999999***************55...77788888.779*************************976 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 0.55
                 ESSHHHHHHHHHTTESEEEETTTCHHHHHHHHHT..TTSSEEEEEESSC CS
  ADH_zinc_N  21 dsseeklelakklGadevinykeadlverikelt..ggegvdvvfecvG 67 
                    +e ++l+++ G  ++++++  +l+++  ++    g g+  v ++vG
  KOO23189.1 284 EALDELAALVRSGGLRATVDRSF-SLEDAALAFNysAGSGAGGVSDHVG 331
                 44455566677777777777722.4444444443333667777777777 PP

>> Glu_dehyd_C  Glucose dehydrogenase C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.0   0.1   5.2e-08   0.00019      38     130 ..     156     243 ..     141     254 .. 0.76
   2 ?   -3.5   0.0       1.6   5.8e+03     169     200 ..     284     316 ..     274     320 .. 0.68

  Alignments for each domain:
  == domain 1  score: 21.0 bits;  conditional E-value: 5.2e-08
  Glu_dehyd_C  38 GaGslGLLalalleaeerglervyvlgrrdrpdptidlveelGatYvdsretpvdeipea.seemdlvvEaTGsakhafeaiealapnGvaaLl 130
                  GaG  G +  ++l+   +++     +++    d +i++v++lGatYv  + ++vd +    + ++d+v++  G+   a +a++a++p G   Ll
   KOO23189.1 156 GAGGTGSIG-IQLA---KAWGAA-HIATSASGDASINFVKSLGATYVV-DYKQVDLFGTLpDDSVDIVYDNYGAEGTADKAMHAIRPGGTYLLL 243
                  444444444.2233...223323.356678889*************96.578888776542689*************************98886 PP

  == domain 2  score: -3.5 bits;  conditional E-value: 1.6
  Glu_dehyd_C 169 aavdtLaalpesl.ldelvtkvvdldeleeAfe 200
                  +a+d+Laal +s  l++ v +   l++++ Af+
   KOO23189.1 284 EALDELAALVRSGgLRATVDRSFSLEDAALAFN 316
                  355556655555468888888888888888887 PP

>> ADH_N  Alcohol dehydrogenase GroES-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   1.8   4.6e-06     0.017       4      60 ..      33      84 ..      30      95 .. 0.86

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 4.6e-06
                EEEEEEEEEE-HHHHHHHTTSTTTTSSSSEE---EEEEEEEEESTT-CS--TT-EEE CS
       ADH_N  4 vlikvkaagiCgsDlhilkggkelevklplilGHEivGeveevgpevkklkvGdrVv 60
                +li+v+a++++ sD+  ++gg    + +    G +++G+v++++ ++++++vGd+V 
  KOO23189.1 33 ALIRVNATSVNPSDVDEVEGG----ACTVGRCGADVSGTVVQCD-DCSRINVGDEVW 84
                79******************4....3333468**********98.6899******96 PP

>> zf-RING_7  C4-type zinc ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.4   3.3e-05      0.12       8      32 ..      41      77 ..      40      77 .. 0.70

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 3.3e-05
                B--CCHHHHHCCS............TB-EE-TTT--E CS
   zf-RING_7  8 elppqvlselrag............devvtCpeCGRI 32
                 ++p+++ e+ +g            + vv+C+ C+RI
  KOO23189.1 41 SVNPSDVDEVEGGactvgrcgadvsGTVVQCDDCSRI 77
                578888888877766554444434455*********9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (338 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       449  (0.0250432); expected 358.6 (0.02)
Passed bias filter:                      363  (0.0202465); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.46u 0.23s 00:00:00.69 Elapsed: 00:00:00.41
# Mc/sec: 2496.25
//
Query:       KOO23190.1  [L=351]
Description: o-linked c transferase like protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.6e-12   45.5   7.4    6.9e-06   25.7   0.2    3.5  4  TPR_1     Tetratricopeptide repeat
    1.4e-11   43.6   5.9    0.00038   20.4   0.1    3.6  3  TPR_2     Tetratricopeptide repeat
    3.2e-10   39.3   0.2    0.00062   19.6   0.1    2.8  2  TPR_7     Tetratricopeptide repeat
    9.3e-09   35.5   0.4    2.2e-08   34.3   0.3    1.7  1  TPR_12    Tetratricopeptide repeat
    4.6e-08   32.7   0.3      0.017   15.3   0.1    2.6  2  TPR_8     Tetratricopeptide repeat
    3.2e-05   23.6   1.2      0.013   15.3   0.9    2.6  2  TPR_10    Tetratricopeptide repeat
     0.0055   17.3   0.8       0.86   10.4   0.1    2.6  2  TPR_6     Tetratricopeptide repeat
  ------ inclusion threshold ------
       0.05   13.3   1.6        1.7    8.4   0.2    2.9  2  TPR_11    TPR repeat
      0.067   13.2   0.4       0.87    9.6   0.0    2.7  3  TPR_3     Tetratricopeptide repeat
      0.085   12.9   0.6          9    6.4   0.1    2.5  2  MIT       MIT (microtubule interacting and transport) domain
       0.17   12.8   4.3        8.8    7.4   0.1    3.4  3  TPR_14    Tetratricopeptide repeat
       0.25   11.9   3.2         12    6.5   0.2    2.4  2  TPR_19    Tetratricopeptide repeat
       0.36   11.5  11.1       0.34   11.6   0.9    2.6  2  TPR_16    Tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> TPR_1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.0         2   2.8e+03       6      20 ..     147     161 ..     146     163 .. 0.82
   2 !   22.7   0.1   4.5e-08   6.1e-05       3      29 ..     179     205 ..     177     208 .. 0.90
   3 !   25.7   0.2     5e-09   6.9e-06       3      33 ..     222     252 ..     220     253 .. 0.95
   4 ?   -2.6   0.0       4.2   5.7e+03       4      11 ..     257     264 ..     256     265 .. 0.83

  Alignments for each domain:
  == domain 1  score: -1.6 bits;  conditional E-value: 2
                 HHHHHHHHTT-HHHH CS
       TPR_1   6 nlGnayfklgkydeA 20 
                  +Gn +f + ++  A
  KOO23190.1 147 CRGNELFDKRDFYGA 161
                 59*****99999765 PP

  == domain 2  score: 22.7 bits;  conditional E-value: 4.5e-08
                 HHHHHHHHHHHTT-HHHHHHHHHHHHH CS
       TPR_1   3 alynlGnayfklgkydeAleyyekALe 29 
                 al n+Gnay  lg   eA+ +y+ A  
  KOO23190.1 179 ALINRGNAYKALGLSAEAISCYQNAMD 205
                 899********************9965 PP

  == domain 3  score: 25.7 bits;  conditional E-value: 5e-09
                 HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT CS
       TPR_1   3 alynlGnayfklgkydeAleyyekALelnPn 33 
                 al+nlG+a++  g+ ++Al+y+  A+ lnP 
  KOO23190.1 222 ALNNLGAACQDDGRMEQALQYFASAVALNPR 252
                 9*****************************7 PP

  == domain 4  score: -2.6 bits;  conditional E-value: 4.2
                 HHHHHHHH CS
       TPR_1   4 lynlGnay 11 
                 l+n++n++
  KOO23190.1 257 LKNRANLH 264
                 79****97 PP

>> TPR_2  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.6   0.4     0.015        20       5      33 ..     146     174 ..     146     175 .. 0.93
   2 !   18.9   0.0   8.1e-07    0.0011       2      32 ..     178     208 ..     177     209 .. 0.93
   3 !   20.4   0.1   2.7e-07   0.00038       3      33 ..     222     252 ..     220     253 .. 0.96

  Alignments for each domain:
  == domain 1  score: 5.6 bits;  conditional E-value: 0.015
       TPR_2   5 ynlGlayyklgdyeeAleafekAleldPn 33 
                 +++G+ ++ + d+  A++ f +A   +P+
  KOO23190.1 146 FCRGNELFDKRDFYGAAAEFAAAAMEAPH 174
                 789********************999886 PP

  == domain 2  score: 18.9 bits;  conditional E-value: 8.1e-07
       TPR_2   2 ealynlGlayyklgdyeeAleafekAleldP 32 
                  al n+G+ay +lg  +eA+ +++ A   +P
  KOO23190.1 178 FALINRGNAYKALGLSAEAISCYQNAMDEAP 208
                 689***********************99887 PP

  == domain 3  score: 20.4 bits;  conditional E-value: 2.7e-07
       TPR_2   3 alynlGlayyklgdyeeAleafekAleldPn 33 
                 al+nlG a+   g+ e+Al++f  A++l+P+
  KOO23190.1 222 ALNNLGAACQDDGRMEQALQYFASAVALNPR 252
                 89****************************7 PP

>> TPR_7  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.0   3.8e-06    0.0053       1      34 [.     179     210 ..     179     212 .. 0.92
   2 !   19.6   0.1   4.5e-07   0.00062       1      29 [.     222     248 ..     222     254 .. 0.87

  Alignments for each domain:
  == domain 1  score: 16.7 bits;  conditional E-value: 3.8e-06
       TPR_7   1 aLlnLarlysrlGdyeeAielyeqsLaltkdped 34 
                 aL n +++y +lG  +eAi++y+   a++++p +
  KOO23190.1 179 ALINRGNAYKALGLSAEAISCYQN--AMDEAPPV 210
                 7899********************..***99976 PP

  == domain 2  score: 19.6 bits;  conditional E-value: 4.5e-07
       TPR_7   1 aLlnLarlysrlGdyeeAielyeqsLalt 29 
                 aL+nL+ +++++G++e+A++++    a++
  KOO23190.1 222 ALNNLGAACQDDGRMEQALQYFAS--AVA 248
                 89********************98..554 PP

>> TPR_12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.3   0.3   1.6e-11   2.2e-08       5      74 ..     179     249 ..     175     252 .. 0.94

  Alignments for each domain:
  == domain 1  score: 34.3 bits;  conditional E-value: 1.6e-11
      TPR_12   5 alnnlaavlrrlgrydeAlellekaleiarrllGpdh.pltattlrnLgrlyralgryeeAlelleealai 74 
                 al n+++++ +lg  +eA+++++ a++ a  +  pd  +l + +l+nLg +++  gr e+Al+++  a+a+
  KOO23190.1 179 ALINRGNAYKALGLSAEAISCYQNAMDEAPPVRSPDGrLLHSCALNNLGAACQDDGRMEQALQYFASAVAL 249
                 5679*************************999888888******************************997 PP

>> TPR_8  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.1   1.2e-05     0.017       3      31 ..     179     207 ..     179     209 .. 0.89
   2 !   14.9   0.0   1.6e-05     0.022       3      33 ..     222     252 ..     222     253 .. 0.95

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 1.2e-05
                 HHHHHHHHHHHTT-HHHHHHHHHHHHHHH CS
       TPR_8   3 ayynlgsiylklgdyeeAkeyyekaleld 31 
                 a+ n g++y+ lg   eA+++y+ a + +
  KOO23190.1 179 ALINRGNAYKALGLSAEAISCYQNAMDEA 207
                 5789*******************998755 PP

  == domain 2  score: 14.9 bits;  conditional E-value: 1.6e-05
                 HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH CS
       TPR_8   3 ayynlgsiylklgdyeeAkeyyekaleldpd 33 
                 a++nlg ++++ g++e+A +y+  a+ l+p 
  KOO23190.1 222 ALNNLGAACQDDGRMEQALQYFASAVALNPR 252
                 689**************************96 PP

>> TPR_10  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.8   0.0    0.0095        13      11      40 ..     179     208 ..     176     210 .. 0.70
   2 !   15.3   0.9   9.6e-06     0.013       4      31 ..     222     249 ..     222     250 .. 0.95

  Alignments for each domain:
  == domain 1  score: 5.8 bits;  conditional E-value: 0.0095
      TPR_10  11 alrqrgrydeAealleealairrrllGpdH 40 
                 al +rg+  +A+ l  ea+++++ +  + +
  KOO23190.1 179 ALINRGNAYKALGLSAEAISCYQNAMDEAP 208
                 566777777777777888888877766555 PP

  == domain 2  score: 15.3 bits;  conditional E-value: 9.6e-06
      TPR_10   4 slnNLanalrqrgrydeAealleealai 31 
                 +lnNL++a ++ gr ++A++++  a+a+
  KOO23190.1 222 ALNNLGAACQDDGRMEQALQYFASAVAL 249
                 79*********************99985 PP

>> TPR_6  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.4   0.1   0.00062      0.86       2      31 ..     179     208 ..     178     208 .. 0.93
   2 ?    4.8   0.1     0.037        51       8      31 ..     228     251 ..     222     252 .. 0.75

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00062
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHH-T CS
       TPR_6   2 AlyklalsyrklgdtdkAlealerlikeYP 31 
                 Al +++ +y++lg +++A+  +++  +e P
  KOO23190.1 179 ALINRGNAYKALGLSAEAISCYQNAMDEAP 208
                 88899******99***********999887 PP

  == domain 2  score: 4.8 bits;  conditional E-value: 0.037
                 HHHHHHHHHHHHHHHHHHHHHH-T CS
       TPR_6   8 lsyrklgdtdkAlealerlikeYP 31 
                  + +  g+ ++Al+++ + +   P
  KOO23190.1 228 AACQDDGRMEQALQYFASAVALNP 251
                 4444445**********9998777 PP

>> TPR_11  TPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.4   0.2    0.0012       1.7       1      20 [.     184     203 ..     184     205 .. 0.95
   2 ?    2.8   0.0     0.067        92       6      25 ..     232     251 ..     227     265 .. 0.88

  Alignments for each domain:
  == domain 1  score: 8.4 bits;  conditional E-value: 0.0012
      TPR_11   1 GdayyeqGkyeeAieaYkkA 20 
                 G+ay ++G   eAi +Y++A
  KOO23190.1 184 GNAYKALGLSAEAISCYQNA 203
                 9******************9 PP

  == domain 2  score: 2.8 bits;  conditional E-value: 0.067
      TPR_11   6 eqGkyeeAieaYkkAlkldP 25 
                 + G+ e+A++ +  A++l+P
  KOO23190.1 232 DDGRMEQALQYFASAVALNP 251
                 56999**************9 PP

>> TPR_3  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   0.0       7.9   1.1e+04      14      23 ..     183     192 ..     182     192 .. 0.80
   2 ?    9.6   0.0   0.00063      0.87       7      29 ..     226     246 ..     223     251 .. 0.85
   3 ?    0.2   0.0      0.58     8e+02      25      34 ..     336     345 ..     333     346 .. 0.85

  Alignments for each domain:
  == domain 1  score: -3.4 bits;  conditional E-value: 7.9
                 TT-HHHHHHH CS
       TPR_3  14 kkkyqeArel 23 
                  ++ ++A++l
  KOO23190.1 183 RGNAYKALGL 192
                 5899999987 PP

  == domain 2  score: 9.6 bits;  conditional E-value: 0.00063
                 HHHHHHHTT-HHHHHHH..HHHH CS
       TPR_3   7 yAaefynkkkyqeArelfsYall 29 
                 ++a++++ ++ ++A+++  +a +
  KOO23190.1 226 LGAACQDDGRMEQALQY--FASA 246
                 79***************..6655 PP

  == domain 3  score: 0.2 bits;  conditional E-value: 0.58
                 .HHHHHHH-T CS
       TPR_3  25 sYallaildk 34 
                 sY+++++l++
  KOO23190.1 336 SYHFTTNLTH 345
                 688*****98 PP

>> MIT  MIT (microtubule interacting and transport) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.3   0.0     0.031        42      19      32 ..     192     205 ..     178     211 .. 0.80
   2 ?    6.4   0.1    0.0066         9      28      64 ..     237     272 ..     236     273 .. 0.93

  Alignments for each domain:
  == domain 1  score: 4.3 bits;  conditional E-value: 0.031
         MIT  19 nyeeAlelYkeale 32 
                   +eA+++Y++a++
  KOO23190.1 192 LSAEAISCYQNAMD 205
                 568*********98 PP

  == domain 2  score: 6.4 bits;  conditional E-value: 0.0066
         MIT  28 kealelLlqalkekneerrellrekieeYleRaeeLk 64 
                 ++al+++  a++  n++    l+++++  l++ae L+
  KOO23190.1 237 EQALQYFASAVA-LNPRCNLSLKNRANLHLTHAEALQ 272
                 58*********9.799******************996 PP

>> TPR_14  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.0   0.3       1.5   2.1e+03       7      32 ..     148     173 ..     146     180 .. 0.79
   2 ?    4.7   0.0     0.049        68       7      32 ..     183     208 ..     177     218 .. 0.84
   3 ?    7.4   0.1    0.0064       8.8       7      33 ..     226     252 ..     222     266 .. 0.89

  Alignments for each domain:
  == domain 1  score: 0.0 bits;  conditional E-value: 1.5
      TPR_14   7 laeallalGdpdeAiallrralalaP 32 
                 ++  l+  +d+ +A+a + +a   aP
  KOO23190.1 148 RGNELFDKRDFYGAAAEFAAAAMEAP 173
                 56667888999999999999977777 PP

  == domain 2  score: 4.7 bits;  conditional E-value: 0.049
      TPR_14   7 laeallalGdpdeAiallrralalaP 32 
                 ++ a+ alG  +eAi +++ a + aP
  KOO23190.1 183 RGNAYKALGLSAEAISCYQNAMDEAP 208
                 7899**************99977766 PP

  == domain 3  score: 7.4 bits;  conditional E-value: 0.0064
      TPR_14   7 laeallalGdpdeAiallrralalaPd 33 
                 l++a+   G+ ++A++++  a+al+P 
  KOO23190.1 226 LGAACQDDGRMEQALQYFASAVALNPR 252
                 78899999*****************96 PP

>> TPR_19  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.8   0.3     0.014        19       3      57 ..     154     209 ..     152     219 .. 0.78
   2 ?    6.5   0.2    0.0088        12       3      35 ..     232     271 ..     231     278 .. 0.76

  Alignments for each domain:
  == domain 1  score: 5.8 bits;  conditional E-value: 0.014
      TPR_19   3 aegdyaeAlalleqalqedpk...naearllLAeallalgqldeAealLdalpeedpd 57 
                 +  d+  A+a +++a  e+p+    a +     +a+ alg  +eA+ + + +++e+p 
  KOO23190.1 154 DKRDFYGAAAEFAAAAMEAPHlivFALINR--GNAYKALGLSAEAISCYQNAMDEAPP 209
                 566777788888888888999755555555..*****************999999987 PP

  == domain 2  score: 6.5 bits;  conditional E-value: 0.0088
      TPR_19   3 aegdyaeAlalleqalqedpk.......naearllLAeal 35 
                 ++g+ ++Al+++++a + +p         a++ l  Aeal
  KOO23190.1 232 DDGRMEQALQYFASAVALNPRcnlslknRANLHLTHAEAL 271
                 57999*************9987666655666666666665 PP

>> TPR_16  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.9   3.5     0.063        86       4      65 ..     149     208 ..     148     211 .. 0.78
   2 ?   11.6   0.9   0.00024      0.34       8      51 ..     231     272 ..     224     276 .. 0.85

  Alignments for each domain:
  == domain 1  score: 3.9 bits;  conditional E-value: 0.063
      TPR_16   4 araalragdyddAaaaleaalkrdpssPd.aaeAllllgdaalrqgrlaeAaalyraalraap 65 
                 ++++++ +d+  Aaa + aa   +   P   + Al ++g+a+ ++g  aeA+  y+ a ++ap
  KOO23190.1 149 GNELFDKRDFYGAAAEFAAAAMEA---PHlIVFALINRGNAYKALGLSAEAISCYQNAMDEAP 208
                 889999999999999996666666...655899999999999999999999965555445555 PP

  == domain 2  score: 11.6 bits;  conditional E-value: 0.00024
      TPR_16   8 lragdyddAaaaleaalkrdpssPdaaeAllllgdaal.rqgrla 51 
                  + g+ ++A+ ++  a++++   P++  +l ++++++l ++  l+
  KOO23190.1 231 QDDGRMEQALQYFASAVALN---PRCNLSLKNRANLHLtHAEALQ 272
                 688*****************...*************995556555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (351 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       310  (0.0172904); expected 358.6 (0.02)
Passed bias filter:                      285  (0.015896); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                        13  (0.000725082); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 0.45u 0.26s 00:00:00.71 Elapsed: 00:00:00.41
# Mc/sec: 2580.38
//
Query:       KOO23191.1  [L=282]
Description: hcr2 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.2e-12   47.8  19.7     0.0011   19.3   0.0    5.6  6  LRR_4     Leucine Rich repeats (2 copies)
    1.8e-11   43.6  23.2    8.3e-05   22.3   2.2    4.8  4  LRR_8     Leucine rich repeat
     0.0053   17.1  11.5        2.9    8.8   0.1    6.2  6  LRR_1     Leucine Rich Repeat
  ------ inclusion threshold ------
        2.2    8.5  13.9         10    6.5   0.0    6.5  8  LRR_6     Leucine Rich repeat


Domain annotation for each model (and alignments):
>> LRR_4  Leucine Rich repeats (2 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.2   0.3     0.029   1.3e+02      23      39 ..      15      27 ..       8      40 .. 0.61
   2 !   11.2   1.8   8.9e-05       0.4       1      39 [.      15      60 ..      15      66 .. 0.79
   3 !   13.9   0.2   1.3e-05     0.057       2      40 ..      45      85 ..      44     102 .. 0.79
   4 !   12.1   0.0   4.6e-05      0.21       2      39 ..      93     132 ..      92     137 .. 0.77
   5 !    7.4   3.6    0.0014       6.4       3      40 ..     142     181 ..     141     190 .. 0.78
   6 !   19.3   0.0   2.4e-07    0.0011       2      37 ..     191     227 ..     190     231 .. 0.85

  Alignments for each domain:
  == domain 1  score: 3.2 bits;  conditional E-value: 0.029
                TT--EEE-.-S-----G CS
       LRR_4 23 pnLkeLdLsgNnlitdl 39
                 n + ++Ls+N    +l
  KOO23191.1 15 QNIEIISLSFN----KL 27
                55566666555....22 PP

  == domain 2  score: 11.2 bits;  conditional E-value: 8.9e-05
                SS--EEE--SS---.E-S-.HH.....H-TT--EEE-.-S-----G CS
       LRR_4  1 pnLevLdLsnNqlt.dipl.le.....klpnLkeLdLsgNnlitdl 39
                +n e+++Ls N+l   +p  l+     ++ +L+e++L++Nn  ++l
  KOO23191.1 15 QNIEIISLSFNKLDgQLPTtLGninsnGNAKLEEITLHRNNITGSL 60
                6899********9988888955455645888******999766666 PP

  == domain 3  score: 13.9 bits;  conditional E-value: 1.3e-05
                S--EEE--SS---.E-S-HHH.-TT--EEE-.-.S-----GG CS
       LRR_4  2 nLevLdLsnNqlt.dipllek.lpnLkeLdLsg.Nnlitdld 40
                +Le++ L+ N++t ++p   + l++L  L++ g N  i++++
  KOO23191.1 45 KLEEITLHRNNITgSLPTEIGrLTDLVMLNV-GlNRMIGSIP 85
                79****************6666********8.5464565553 PP

  == domain 4  score: 12.1 bits;  conditional E-value: 4.6e-05
                 S--EEE--SS---.E-S-.HHH-TT--EEE-.-S-----G CS
       LRR_4   2 nLevLdLsnNqlt.dipl.leklpnLkeLdLsgNnlitdl 39 
                  L+v + ++  l  +ip  l+ ++ L++L+ s+Nn  ++l
  KOO23191.1  93 ALQVFYAHGMGLEgTIPEdLGAMTALRYLNFSENNISGTL 132
                 5777777777788888997777*********999665655 PP

  == domain 5  score: 7.4 bits;  conditional E-value: 0.0014
                 --EEE--SS---.E-S-.HHH-TT--EEE-.-S---.--GG CS
       LRR_4   3 LevLdLsnNqlt.dipl.leklpnLkeLdLsgNnli.tdld 40 
                 L  L+L+ N+l+ ++pl l+++  L+ L + +Nn + ++++
  KOO23191.1 142 LNDLSLFENRLSgSLPLeLGNIAPLRNLRM-QNNMLnGNFT 181
                 56799**9*********9888999******.6555544444 PP

  == domain 6  score: 19.3 bits;  conditional E-value: 2.4e-07
                 S--EEE--SS.---E-S-.HHH-TT--EEE-.-S---- CS
       LRR_4   2 nLevLdLsnN.qltdipl.leklpnLkeLdLsgNnlit 37 
                 +L +LdL  N ++ d+p  l++l++L++L++ +N  ++
  KOO23191.1 191 SLVTLDLYENaMVGDVPAsLQNLTSLQYLYV-DNQHLR 227
                 799*****664999****9999*********.886665 PP

>> LRR_8  Leucine rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   2.6   2.8e-06     0.013       9      60 ..      28      79 ..      15      80 .. 0.83
   2 !   15.2   0.3   3.1e-06     0.014       2      54 ..      45      97 ..      44     101 .. 0.74
   3 !   15.5   1.3   2.4e-06     0.011      24      61 .]     115     152 ..     107     152 .. 0.94
   4 !   22.3   2.2   1.9e-08   8.3e-05       3      61 .]     166     226 ..     164     226 .. 0.80

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 2.8e-06
                TTS--SEE-TTSSTT-TT--EEE--SS---GGGGGGGTT--S-.EEE--SS- CS
       LRR_8  9 snNrltslddeaFkglsnLkvLdLsnNllttlspgafsgLpsLrsLdLsgNr 60
                +    t l+    +g+ +L+++ L +N++t   p  +  L+ L +L++  Nr
  KOO23191.1 28 DGQLPTTLGNINSNGNAKLEEITLHRNNITGSLPTEIGRLTDLVMLNVGLNR 79
                344447788888899****************99**************98776 PP

  == domain 2  score: 15.2 bits;  conditional E-value: 3.1e-06
                T-SEEE-TTS--SEE-TTSSTT-TT--EEE--SS.---GGGGGGGTT--S-.EE CS
       LRR_8  2 nLtsLdLsnNrltslddeaFkglsnLkvLdLsnN.llttlspgafsgLpsLrsL 54
                +L+++ L++N++t+  ++   +l+ L +L+ + N  + ++ p  + +L++L+  
  KOO23191.1 45 KLEEITLHRNNITGSLPTEIGRLTDLVMLNVGLNrMIGSI-PTQLTNLTALQVF 97
                6888889999977766666677999999999999444445.8888888888865 PP

  == domain 3  score: 15.5 bits;  conditional E-value: 2.4e-06
                 -TT--EEE--SS---GGGGGGGTT--S-.EEE--SS-- CS
       LRR_8  24 lsnLkvLdLsnNllttlspgafsgLpsLrsLdLsgNrL 61 
                 +++L++L+ s+N+++   p +  +L  L  L L  NrL
  KOO23191.1 115 MTALRYLNFSENNISGTLPPSVGNLGMLNDLSLFENRL 152
                 899*************99******************98 PP

  == domain 4  score: 22.3 bits;  conditional E-value: 1.9e-08
                 -SEEE-TTS--SE..E-TTSSTT-TT--EEE--SS---GGGGGGGTT--S-.EEE--SS-- CS
       LRR_8   3 LtsLdLsnNrlts..lddeaFkglsnLkvLdLsnNllttlspgafsgLpsLrsLdLsgNrL 61 
                 L++L  +nN l++   + ++  +l++L +LdL +N +    p ++++L+sL++L++++ +L
  KOO23191.1 166 LRNLRMQNNMLNGnfTEFTTLGNLRSLVTLDLYENAMVGDVPASLQNLTSLQYLYVDNQHL 226
                 66666666665541134457789****************99***************99776 PP

>> LRR_1  Leucine Rich Repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.5   0.2     0.074   3.3e+02       1      20 [.      16      35 ..      16      39 .. 0.81
   2 ?    3.2   0.0     0.043   1.9e+02       1      20 [.      45      64 ..      45      67 .. 0.84
   3 !    8.8   0.1   0.00066       2.9       2      23 .]     118     139 ..     117     139 .. 0.92
   4 ?   -1.9   0.1       2.1   9.3e+03       2      12 ..     166     176 ..     166     186 .. 0.74
   5 ?    1.4   0.0      0.17   7.7e+02       2      23 .]     192     213 ..     188     213 .. 0.80
   6 ?    3.3   0.0     0.042   1.9e+02       1      17 [.     215     239 ..     215     243 .. 0.73

  Alignments for each domain:
  == domain 1  score: 2.5 bits;  conditional E-value: 0.074
       LRR_1  1 nLrhLdLsnnpllglppnsf 20
                n + + Ls n l+g +p ++
  KOO23191.1 16 NIEIISLSFNKLDGQLPTTL 35
                67999*******88777766 PP

  == domain 2  score: 3.2 bits;  conditional E-value: 0.043
       LRR_1  1 nLrhLdLsnnpllglppnsf 20
                +L+++ L +n+++g +p  +
  KOO23191.1 45 KLEEITLHRNNITGSLPTEI 64
                79**********99888665 PP

  == domain 3  score: 8.8 bits;  conditional E-value: 0.00066
       LRR_1   2 LrhLdLsnnpllglppnsfqnL 23 
                 Lr+L+ s n+++g +p+s  nL
  KOO23191.1 118 LRYLNFSENNISGTLPPSVGNL 139
                 9****************99887 PP

  == domain 4  score: -1.9 bits;  conditional E-value: 2.1
       LRR_1   2 LrhLdLsnnpl 12 
                 Lr L + nn l
  KOO23191.1 166 LRNLRMQNNML 176
                 77888888866 PP

  == domain 5  score: 1.4 bits;  conditional E-value: 0.17
       LRR_1   2 LrhLdLsnnpllglppnsfqnL 23 
                 L +LdL  n   g  p+s+qnL
  KOO23191.1 192 LVTLDLYENAMVGDVPASLQNL 213
                 6677999998888899999987 PP

  == domain 6  score: 3.3 bits;  conditional E-value: 0.042
       LRR_1   1 nLrhLdLsnnpl........lglpp 17 
                 +L++L++ n++l        ++ +p
  KOO23191.1 215 SLQYLYVDNQHLrpvrqrycGQRIP 239
                 69********996666666644444 PP

>> LRR_6  Leucine Rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.4   0.0     0.045     2e+02       3      17 ..      15      29 ..      13      30 .. 0.84
   2 ?    1.3   0.1      0.11   4.8e+02       2      17 ..      43      58 ..      42      59 .. 0.89
   3 ?   -2.8   0.0       2.1   9.3e+03       8      16 ..      73      82 ..      70      83 .. 0.81
   4 ?    0.1   0.0      0.26   1.2e+03       2      16 ..      88     103 ..      87     106 .. 0.72
   5 ?    6.5   0.0    0.0023        10       5      17 ..     118     130 ..     115     131 .. 0.90
   6 ?   -2.2   0.1       1.4   6.3e+03       5      17 ..     142     154 ..     141     155 .. 0.77
   7 ?    1.5   0.0     0.088   3.9e+02       2      17 ..     189     205 ..     188     206 .. 0.80
   8 ?   -2.9   0.1       2.4   1.1e+04       4       8 ..     212     216 ..     210     219 .. 0.67

  Alignments for each domain:
  == domain 1  score: 2.4 bits;  conditional E-value: 0.045
       LRR_6  3 thLteLdLsgNdIgD 17
                ++++  +Ls+N++++
  KOO23191.1 15 QNIEIISLSFNKLDG 29
                5788999*****986 PP

  == domain 2  score: 1.3 bits;  conditional E-value: 0.11
       LRR_6  2 nthLteLdLsgNdIgD 17
                n +L+e  L  N+I++
  KOO23191.1 43 NAKLEEITLHRNNITG 58
                8899**********97 PP

  == domain 3  score: -2.8 bits;  conditional E-value: 2.1
       LRR_6  8 LdLsgNd.Ig 16
                L++  N  Ig
  KOO23191.1 73 LNVGLNRmIG 82
                8999998776 PP

  == domain 4  score: 0.1 bits;  conditional E-value: 0.26
       LRR_6   2 nthLteLdLsgNd.Ig 16 
                  t+Lt+L++ + + +g
  KOO23191.1  88 LTNLTALQVFYAHgMG 103
                 589****998766555 PP

  == domain 5  score: 6.5 bits;  conditional E-value: 0.0023
       LRR_6   5 LteLdLsgNdIgD 17 
                 L++L+ s N+I++
  KOO23191.1 118 LRYLNFSENNISG 130
                 9**********86 PP

  == domain 6  score: -2.2 bits;  conditional E-value: 1.4
       LRR_6   5 LteLdLsgNdIgD 17 
                 L  L+L  N +++
  KOO23191.1 142 LNDLSLFENRLSG 154
                 6789999998875 PP

  == domain 7  score: 1.5 bits;  conditional E-value: 0.088
       LRR_6   2 nthLteLdLsgNd.IgD 17 
                  ++L +LdL  N  +gD
  KOO23191.1 189 LRSLVTLDLYENAmVGD 205
                 589******88887777 PP

  == domain 8  score: -2.9 bits;  conditional E-value: 2.4
       LRR_6   4 hLteL 8  
                 +Lt+L
  KOO23191.1 212 NLTSL 216
                 67776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (282 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       241  (0.0134419); expected 358.6 (0.02)
Passed bias filter:                      211  (0.0117686); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.44u 0.28s 00:00:00.72 Elapsed: 00:00:00.43
# Mc/sec: 1961.04
//
Query:       KOO23192.1  [L=388]
Description: heat shock protein ATPase subunit [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    8.2e-43  146.5   1.5    1.9e-34  119.2   0.2    2.7  2  AAA_2            AAA domain (Cdc48 subfamily)
    1.5e-15   57.8   1.0    1.3e-06   28.8   0.1    2.7  2  AAA              ATPase family associated with various cellul
    1.2e-06   28.6   0.2    3.8e-05   23.7   0.0    2.7  2  AAA_5            AAA domain (dynein-related subfamily)
    1.4e-05   25.1   0.4    1.4e-05   25.1   0.4    2.1  2  ClpB_D2-small    C-terminal, D2-small domain, of ClpB protein
    2.8e-05   24.4   1.1    0.00025   21.3   0.0    2.8  3  AAA_22           AAA domain
    6.4e-05   23.4   1.1     0.0014   19.0   1.1    2.5  1  AAA_16           AAA ATPase domain
    6.8e-05   23.1   0.1    0.00019   21.6   0.0    1.8  1  AAA_33           AAA domain
    0.00087   19.8   0.1     0.0031   18.0   0.0    2.0  2  AAA_18           AAA domain
     0.0017   17.8   0.0     0.0071   15.8   0.0    2.0  2  Mg_chelatase     Magnesium chelatase, subunit ChlI
     0.0034   17.1   0.3      0.056   13.2   0.0    2.6  3  Sigma54_activat  Sigma-54 interaction domain
     0.0038   17.1   0.3        3.3    7.6   0.0    2.6  2  AAA_3            ATPase family associated with various cellul
     0.0094   15.7   0.0      0.032   14.0   0.0    1.9  2  IstB_IS21        IstB-like ATP binding protein
  ------ inclusion threshold ------
      0.016   14.9   3.0       0.63    9.8   0.0    3.4  4  RuvB_N           Holliday junction DNA helicase RuvB P-loop d
      0.019   14.8   0.9        6.6    6.6   0.0    2.9  3  RsgA_GTPase      RsgA GTPase
      0.027   14.4   0.2        2.3    8.1   0.0    2.6  2  NACHT            NACHT domain
      0.028   14.7   0.0      0.068   13.4   0.0    1.7  1  AAA_28           AAA domain
      0.032   13.9   0.1      0.098   12.3   0.1    1.8  1  SRP54            SRP54-type protein, GTPase domain
      0.034   13.5   0.3       0.24   10.7   0.0    2.3  2  IPT              Isopentenyl transferase
      0.043   13.5   0.1       0.08   12.7   0.1    1.7  1  AAA_24           AAA domain
      0.056   12.8   0.4       0.17   11.2   0.0    2.0  2  TniB             Bacterial TniB protein
      0.059   12.9   0.0       0.13   11.8   0.0    1.6  1  AAA_7            P-loop containing dynein motor region
       0.11   12.8   0.0       0.22   11.7   0.0    1.6  1  Roc              Ras of Complex, Roc, domain of DAPkinase
       0.18   11.6   3.0        1.7    8.4   3.0    2.8  1  DEAD             DEAD/DEAH box helicase


Domain annotation for each model (and alignments):
>> AAA_2  AAA domain (Cdc48 subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.5   0.0   1.5e-08   1.2e-05       5      56 ..       4      55 ..       2      74 .. 0.90
   2 !  119.2   0.2   2.5e-37   1.9e-34      21     171 .]     147     274 ..     112     274 .. 0.88

  Alignments for each domain:
  == domain 1  score: 25.5 bits;  conditional E-value: 1.5e-08
                -EEEE--TTSSHHHHHHHHHHHTT-....-EEEEEGGG---....----THHHHHH CS
       AAA_2  5 silllgptgvGktelakalaellfvkkekkliradaselle....eeevehlvsrl 56
                +il++gptgvGkte+a+ la++ ++    ++i ++a++++e    +++v++++  l
  KOO23192.1  4 NILMIGPTGVGKTEIARRLAKMARA----PFIKVEATKFTEvgfvGKDVDQIIRDL 55
                89*********************96....************888888888888776 PP

  == domain 2  score: 119.2 bits;  conditional E-value: 2.5e-37
                 HHHHHHTT-....-EEEEEGGG-------THHHHHHHHHTTT-HHHHTTSEEEEETGGG----..---------HHHHHHHHHHHH--EE-------EE CS
       AAA_2  21 kalaellfvkkekkliradaselleeeevehlvsrligappgyvgaeegGivllDEidKihpk..essgadvSregVqrdLLqileggtltdkqgrkvd 117
                 k++   ++  +++++  +d   +l+e e+e++++++ +++ ++   e++Giv++DEidKi++k   + +ad S+egVqrdLL++leg+++++k+g +++
  KOO23192.1 147 KMMHGRQK-MEKREMLLKDSVPILTELESEKMINEDDIKRSAIHLIEQEGIVFIDEIDKICSKndFRGSADASSEGVQRDLLPLLEGSQVQTKHG-NIN 243
                 44444455.5899**************************************************988999**************************.*** PP

                 -TT-EEEEEE--TTHHHHTTTS-STTTTSGGG--HHHHHHTT--HHHHTT--EE CS
       AAA_2 118 tknilfImtgafgsskisdesrskeeeeekkkeeveeelkkglipEllgRlpei 171
                 t++ilfI++gaf+  k+sd                       l +El+gRlp++
  KOO23192.1 244 TDHILFICSGAFHYCKPSD-----------------------LLAELQGRLPIR 274
                 *******************.......................999999999985 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.8   0.1   1.7e-09   1.3e-06       1      53 [.       5      55 ..       5      97 .. 0.77
   2 !   27.1   0.1     6e-09   4.7e-06      54     128 ..     184     275 ..     154     279 .. 0.77

  Alignments for each domain:
  == domain 1  score: 28.8 bits;  conditional E-value: 1.7e-09
                EEEESSTTSSHHHHHHHHHHHHTHEEEEEETTTCSSSSTTHHHHHHHHHHHHH CS
         AAA  1 vllyGppGtGKTllakavakelgvefleisgsellskyvgesekkirelfkea 53
                +l++Gp G+GKT +a+ +ak + ++f+++++++++   vg   k++ ++++++
  KOO23192.1  5 ILMIGPTGVGKTEIARRLAKMARAPFIKVEATKFT--EVGFVGKDVDQIIRDL 55
                699********************************..5666666666666554 PP

  == domain 2  score: 27.1 bits;  conditional E-value: 6e-09
                 HHTS.....TSEEEEEETGGGHHHHH..TTCCCHHHHHHHHHHHHHHHHTTTS.......SSTEEEEEEESS....GGGSTHHHHSTTSSEEE CS
         AAA  54 keka.....kpsilfiDEidalaksr..sgseseeeervvnqLlteldgvkkk.......eskvivigatnr....pdkldpallrgRfdrki 128
                 k++a     +  i+fiDEid++++++  +gs++ ++e v+  Ll+ l+g + +       ++++++i+ +      p++l  +l  gR+ +++
  KOO23192.1 184 KRSAihlieQEGIVFIDEIDKICSKNdfRGSADASSEGVQRDLLPLLEGSQVQtkhgninTDHILFICSGAFhyckPSDLLAELQ-GRLPIRV 275
                 344444554459***************99999*******************9999999985568888877654444555555555.6666665 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.7   0.0   4.9e-08   3.8e-05       1      37 [.       4      40 ..       4      84 .. 0.85
   2 ?    2.1   0.0      0.23   1.8e+02      60      77 ..     184     205 ..     147     209 .. 0.66

  Alignments for each domain:
  == domain 1  score: 23.7 bits;  conditional E-value: 4.9e-08
                EEEEE--SSSSHHHHHHHGGGGBS--EEEEE--TT-- CS
       AAA_5  1 dvlLvGppGtgKselaerlaaalnreveyvqltrdtt 37
                ++l++Gp+G+gK+e+a+rla++ ++++  v  t++t+
  KOO23192.1  4 NILMIGPTGVGKTEIARRLAKMARAPFIKVEATKFTE 40
                689*************************999999987 PP

  == domain 2  score: 2.1 bits;  conditional E-value: 0.23
                 -----....G-SEEEEESGGG- CS
       AAA_5  60 vraar....egeilvlDEvera 77 
                 +r+a     +  i+++DE++++
  KOO23192.1 184 KRSAIhlieQEGIVFIDEIDKI 205
                 444445555788********97 PP

>> ClpB_D2-small  C-terminal, D2-small domain, of ClpB protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.1       4.7   3.6e+03      22      36 ..      70      85 ..      48      89 .. 0.52
   2 !   25.1   0.4   1.8e-08   1.4e-05       1      62 [.     280     350 ..     280     355 .. 0.84

  Alignments for each domain:
  == domain 1  score: -1.9 bits;  conditional E-value: 4.7
                   CT.TTEEEEEHHHHHH CS
  ClpB_D2-small 22 ke.rgvelevtdeald 36
                   k  ++v+  v++++ld
     KOO23192.1 70 KIkEKVTARVEEKLLD 85
                   2124455555555554 PP

  == domain 2  score: 25.1 bits;  conditional E-value: 1.8e-08
                    SCHHHHHHHHHH...HHHHHHHHSCT.TTEEEEEHHHHHHHHHHHTSB.....TTTBTCCHHHHHHHHTHH CS
  ClpB_D2-small   1 LtkeelkkIvdl...alkklekrlke.rgvelevtdealdalaekgyd.....peyGARpLrriiqreied 62 
                    Lt+++l++++++    l k++  +++ ++vel++t+ a++ +a+ +++     ++ G R L +ii+r +ed
     KOO23192.1 280 LTENDLHRVLTEpenNLVKQQVAMMKtENVELQITEGAIQRMAKLATEinrdvENIGCRRLHTIIERLMED 350
                    89***********99666655555444******************97633334579*************98 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.3   0.0   3.3e-07   0.00025       8      53 ..       5      41 ..       2     114 .. 0.79
   2 ?   -0.3   0.1       1.5   1.2e+03      92     104 ..     194     206 ..     167     257 .. 0.68
   3 ?   -0.6   0.1       1.9   1.5e+03      38     102 ..     304     372 ..     276     384 .. 0.67

  Alignments for each domain:
  == domain 1  score: 21.3 bits;  conditional E-value: 3.3e-07
      AAA_22  8 lvvtGesGtGKTtllrrlleqldeeakaeeerpevvfvtlpsstss 53
                ++ +G++G+GKT  +rrl++ +         r+++++v++++ t+ 
  KOO23192.1  5 ILMIGPTGVGKTEIARRLAKMA---------RAPFIKVEATKFTEV 41
                7889*****************9.........**********99943 PP

  == domain 2  score: -0.3 bits;  conditional E-value: 1.5
      AAA_22  92 ielliiDEaqhlr 104
                  +++ iDE++++ 
  KOO23192.1 194 EGIVFIDEIDKIC 206
                 3579999999975 PP

  == domain 3  score: -0.6 bits;  conditional E-value: 1.9
      AAA_22  38 erpevvfvtlpsst..sskdllrellralglelkaerlsseell.ealeqalrarav....ielliiDEaqh 102
                 ++ e v+ +++++     ++l++e+ r++++ + +   +++ ++ +++e+ + ++++    +++l  D++q+
  KOO23192.1 304 MKTENVELQITEGAiqRMAKLATEINRDVENIGCR---RLHTIIeRLMEDLSFSAHDrageRVVLTEDDVQK 372
                 66677777777777767778888888888888888...7777774444444444444566777777777775 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.0   1.1   1.8e-06    0.0014      24     128 ..       2     105 ..       1     383 [. 0.84

  Alignments for each domain:
  == domain 1  score: 19.0 bits;  conditional E-value: 1.8e-06
      AAA_16  24 pelvllsGesGvGKsslvrellralekdggiflrgkcdqlesaipysalaqalareellrqlldeaesaeleawrekleeala......avpelagaea 116
                 p ++l +G+ GvGK+ ++r+l++ +++    f++ +++++   ++ + ++     ++++r+l+d   + + +++ ek++e ++                
  KOO23192.1   2 PKNILMIGPTGVGKTEIARRLAKMARAP---FIKVEATKF---TE-VGFVGKD-VDQIIRDLADTGIQIAKARAMEKIKEKVTarveekL--------L 84 
                 57899*****************988888...666666666...22.2566666.447888888776666666666666666662222220........1 PP

      AAA_16 117 .........srllellkrlla 128
                          ++ +e++++ll+
  KOO23192.1  85 dclvgpsniQHNREAFRKLLR 105
                 333333334555555555554 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.6   0.0   2.5e-07   0.00019       2     109 ..       5     121 ..       5     124 .. 0.75

  Alignments for each domain:
  == domain 1  score: 21.6 bits;  conditional E-value: 2.5e-07
      AAA_33   2 vllvGlpGsGKstlaerllkklgavllssdtlrrrlfg...tdqqsktdytr.vldrlyqilnelarkalsagrnvildatnls........rrerarf 88 
                 +l++G+ G+GK+  a+rl+k   a ++   + +++ +g   +d++++   +r ++d  +qi +++a ++ +++ ++ +   +l+        +++r++f
  KOO23192.1   5 ILMIGPTGVGKTEIARRLAKMARAPFIKVEATKFTEVGfvgKDVDQI---IRdLADTGIQIAKARAMEKIKEKVTARVEEKLLDclvgpsniQHNREAF 100
                 69*****************9999888888887777666433444433...332666667777777777777777777766666666666665899**** PP

      AAA_33  89 lklarrlgvpvrivvvetdee 109
                 +kl+r  +  +r++ +e++e+
  KOO23192.1 101 RKLLRMGHLDDRLIEIEVPEK 121
                 *****999999*******997 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.0   0.0     4e-06    0.0031       1      25 [.       5      49 ..       5     115 .. 0.66
   2 ?   -2.0   0.0       6.4     5e+03      75      87 ..     338     352 ..     276     370 .. 0.54

  Alignments for each domain:
  == domain 1  score: 18.0 bits;  conditional E-value: 4e-06
      AAA_18  1 IlltGtpGvGKttlakeLskrlgf....................g 25
                Il  G+ GvGKt++a++L+k+                        
  KOO23192.1  5 ILMIGPTGVGKTEIARRLAKMARApfikveatkftevgfvgkdvD 49
                7889****************9522456666566455544433322 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 6.4
      AAA_18  75 knl..vidghlaele 87 
                   l  +i+ ++++l 
  KOO23192.1 338 RRLhtIIERLMEDLS 352
                 222225555555544 PP

>> Mg_chelatase  Magnesium chelatase, subunit ChlI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.0   9.1e-06    0.0071      24      46 ..       4      26 ..       2      53 .. 0.77
   2 ?   -1.5   0.0       1.7   1.3e+03     106     117 ..     193     204 ..     160     208 .. 0.80

  Alignments for each domain:
  == domain 1  score: 15.8 bits;  conditional E-value: 9.1e-06
  Mg_chelatase 24 nlllvGppGsGKtmlakrlpsll 46
                  n+l++Gp G GKt +a+rl+++ 
    KOO23192.1  4 NILMIGPTGVGKTEIARRLAKMA 26
                  9******************9875 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 1.7
  Mg_chelatase 106 hnGvLfLDElpe 117
                   ++G++f+DE+ +
    KOO23192.1 193 QEGIVFIDEIDK 204
                   579999999865 PP

>> Sigma54_activat  Sigma-54 interaction domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.2   0.0   7.2e-05     0.056      23      61 ..       3      38 ..       1      43 [. 0.83
   2 ?    0.9   0.0      0.43   3.4e+02      93     106 ..     193     206 ..     184     211 .. 0.85
   3 ?   -3.4   0.0       8.5   6.6e+03      40     145 ..     283     309 ..     272     321 .. 0.48

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 7.2e-05
                     S-EEEECSTTSSHHHHHHHHHHHSTTTTS-EEEEETTTS CS
  Sigma54_activat 23 lsvlitGesGtGKellaraiheaskrkekpfvavncaai 61
                      ++l+ G +G+GK+ +ar + +    +++pf++v+ +++
       KOO23192.1  3 KNILMIGPTGVGKTEIARRLAKM---ARAPFIKVEATKF 38
                     689***************98765...5589999987765 PP

  == domain 2  score: 0.9 bits;  conditional E-value: 0.43
                      TTSEEEEETGGGS- CS
  Sigma54_activat  93 dgGtlfLDeigelp 106
                      ++G++f+Dei ++ 
       KOO23192.1 193 QEGIVFIDEIDKIC 206
                      68********9875 PP

  == domain 3  score: -3.4 bits;  conditional E-value: 8.5
                      HHHHHHSTTTTS-EEEEETTTS-TTCHHHHHHEBSSSSSTTTSS-BEHHHHHTTTSEEEEETGGGS-HHHHHHHHHHHHHSEEESBTSSSEEE- CS
  Sigma54_activat  40 raiheaskrkekpfvavncaaipeelleseLFGhekGaFtGAekekkGlfekadgGtlfLDeigelplelQekLlrvlqegevervGsskeikv 133
                      + +h+  ++ e+++v+ ++a +                                                                        
       KOO23192.1 283 NDLHRVLTEPENNLVKQQVAMM------------------------------------------------------------------------ 304
                      3334444444444444444333........................................................................ PP

                      -EEEEEEESS-H CS
  Sigma54_activat 134 dvriiaatnedl 145
                              +e++
       KOO23192.1 305 -------KTENV 309
                      .......33333 PP

>> AAA_3  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.6   0.0    0.0042       3.3       2      33 ..       5      36 ..       4      50 .. 0.89
   2 !    7.1   0.1    0.0058       4.5      45      91 ..     302     348 ..     275     388 .] 0.72

  Alignments for each domain:
  == domain 1  score: 7.6 bits;  conditional E-value: 0.0042
       AAA_3  2 vllegvPGlaktllvkalakaldlefkriqft 33
                +l+ g  G++kt +++ lak+  + f ++  t
  KOO23192.1  5 ILMIGPTGVGKTEIARRLAKMARAPFIKVEAT 36
                7899999***************9999998876 PP

  == domain 2  score: 7.1 bits;  conditional E-value: 0.0058
       AAA_3  45 evfeekekefefkkGpvfanllladeinrappktqsalleameerqv 91 
                  ++++++ e+++++G++     la einr    + +  l ++ er +
  KOO23192.1 302 AMMKTENVELQITEGAIQRMAKLATEINRDVENIGCRRLHTIIERLM 348
                 5677788999*******************998887777777766655 PP

>> IstB_IS21  IstB-like ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.0   0.0   4.1e-05     0.032      48      73 ..       3      28 ..       1      50 [. 0.84
   2 ?   -2.4   0.0       4.4   3.4e+03      17      95 ..     330     356 ..     318     366 .. 0.44

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 4.1e-05
   IstB_IS21 48 enivllGpsGvGKshlaialgveavr 73
                +ni+++Gp+GvGK+ +a  l++ a +
  KOO23192.1  3 KNILMIGPTGVGKTEIARRLAKMARA 28
                69****************99988765 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 4.4
   IstB_IS21  17 ktledidfraarsldkrkvkeLatlsfiekkenivllGpsGvGKshlaialgveavraglsvlfvrvedLveelkrarr 95 
                 +++e+i  r  + + +                                                    +L+e l+   +
  KOO23192.1 330 RDVENIGCRRLHTIIE----------------------------------------------------RLMEDLSFSAH 356
                 4444444444444444....................................................44444443333 PP

>> RuvB_N  Holliday junction DNA helicase RuvB P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   0.0   0.00081      0.63      35     118 ..       4      89 ..       2      99 .. 0.63
   2 ?   -1.2   0.0       1.9   1.5e+03      74      96 ..     164     186 ..     159     192 .. 0.85
   3 ?    2.8   0.2      0.11        89      79      97 ..     188     206 ..     170     211 .. 0.78
   4 ?   -0.2   0.0      0.96   7.5e+02      21      77 ..     273     326 ..     264     360 .. 0.64

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.00081
      RuvB_N  35 hvllyGpPGlGkttlakiiakelgvklkitsgPvlek....agdlaalltnleekdvlfideihrlsraveevlysamedfrldivig 118
                  +l++Gp G+Gkt +a+ +ak   + +    +    +     +d+  ++ +l ++ +       r  ++++e + + +e+  ld ++g
  KOO23192.1   4 NILMIGPTGVGKTEIARRLAKMARAPFIKVEATKFTEvgfvGKDVDQIIRDLADTGIQIA-K-ARAMEKIKEKVTARVEEKLLDCLVG 89 
                 589**************9999887765444333333301113466677777777666433.3.3444555566666666666666666 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 1.9
      RuvB_N  74 dlaalltnleekdvlfideihrl 96 
                 d + +lt+le+++++  d+i r 
  KOO23192.1 164 DSVPILTELESEKMINEDDIKRS 186
                 66889**************9995 PP

  == domain 3  score: 2.8 bits;  conditional E-value: 0.11
      RuvB_N  79 ltnleekdvlfideihrls 97 
                 +  +e++ ++fidei ++ 
  KOO23192.1 188 IHLIEQEGIVFIDEIDKIC 206
                 55678999*******9986 PP

  == domain 4  score: -0.2 bits;  conditional E-value: 0.96
      RuvB_N  21 ifieaakkreealdhvllyGpPGlGkttlakiiakelgvklkitsgPvlekagdlaa 77 
                 i +e     e+ l  vl      l k  +a++ +++  v+l+it g ++++ + la+
  KOO23192.1 273 IRVELKSLTENDLHRVLTEPENNLVKQQVAMMKTEN--VELQITEG-AIQRMAKLAT 326
                 555555555566666666666677777777665554..44555555.4566555554 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6   0.0    0.0085       6.6     102     122 ..       5      25 ..       2      41 .. 0.82
   2 ?   -0.6   0.0       1.4   1.1e+03      64     108 ..      47      91 ..      31      93 .. 0.74
   3 ?    4.9   0.3     0.029        23      29      85 ..     279     338 ..     273     356 .. 0.74

  Alignments for each domain:
  == domain 1  score: 6.6 bits;  conditional E-value: 0.0085
                  EEEECSTTSSHHHHHHHHCTT CS
  RsgA_GTPase 102 svlvGqSGvGKStLinallpe 122
                  ++++G++GvGK+ +  +l+  
   KOO23192.1   5 ILMIGPTGVGKTEIARRLAKM 25 
                  6899*********99999875 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 1.4
                  HHHHHHHHHHHTTSEEEE--TTTHTTHHHHHHHCTT.SEEEEECST CS
  RsgA_GTPase  64 eleelkeelealgyevllvsaktkegleelkellkd.ktsvlvGqS 108
                  +++++  +l+++g+++ + +a  ++  e++++++++  + +lvG+S
   KOO23192.1  47 DVDQIIRDLADTGIQIAKARAM-EKIKEKVTARVEEkLLDCLVGPS 91 
                  5788889999999999999777.44556677777773566888887 PP

  == domain 3  score: 4.9 bits;  conditional E-value: 0.029
                  T--HHHHHHHHHHHHHTT-EEEEEEE-GGG--HHH...HHHHHHHHHHHTTSEEEE--TT CS
  RsgA_GTPase  29 elslnlldrfLvlaeekgiepvivlnKiDlleeee...eleelkeelealgyevllvsak 85 
                  +l++n l+r+L++ e++ ++  +++ K++ +e +    +++++++  ++++ +v  +  +
   KOO23192.1 279 SLTENDLHRVLTEPENNLVKQQVAMMKTENVELQItegAIQRMAKLATEINRDVENIGCR 338
                  678899**********************99988775566666666666776666655544 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.1   0.0     0.003       2.3       3      26 ..       5      28 ..       3      54 .. 0.87
   2 ?    3.7   0.0     0.069        54      71     114 ..     180     231 ..     149     243 .. 0.74

  Alignments for each domain:
  == domain 1  score: 8.1 bits;  conditional E-value: 0.003
                EEEEC-TTTCHHHHHHHHHHHHCT CS
       NACHT  3 vilqGeaGsGKTtLlqklalawae 26
                +++ G+ G+GKT  +++la  +++
  KOO23192.1  5 ILMIGPTGVGKTEIARRLAKMARA 28
                7899**************987765 PP

  == domain 2  score: 3.7 bits;  conditional E-value: 0.069
                 C...CHHHHCCSCCCEEEEEE-STT-SS-TCH..............HHHHHC CS
       NACHT  71 e...vwavllelperlLlilDglDelvtdlgq.....kekqpvrtlLselir 114
                 e   +++ +  +++     +D +D++++++++     +  + v++ L  l++
  KOO23192.1 180 EddiKRSAIHLIEQEGIVFIDEIDKICSKNDFrgsadASSEGVQRDLLPLLE 231
                 255567889999999999**********999987766444455555555555 PP

>> AAA_28  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.0   8.8e-05     0.068       2      70 ..       5      77 ..       4      86 .. 0.68

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 8.8e-05
      AAA_28  2 ivitGgestGKTtlleaLaar.gypvvpEaareileekl..akgedalpwv.edllafaervleeqleeeaaa 70
                i ++G+ + GKT ++++La++   p ++  a++++e +   ++  +++++  ++ +++a+++  e+++e   a
  KOO23192.1  5 ILMIGPTGVGKTEIARRLAKMaRAPFIKVEATKFTEVGFvgKDVDQIIRDLaDTGIQIAKARAMEKIKEKVTA 77
                899****************876677776666666666654333344555555677777777666666665544 PP

>> SRP54  SRP54-type protein, GTPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.1   0.00013     0.098       2      26 ..       3      27 ..       2      36 .. 0.87

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 0.00013
                EEEEEEESTTSSHHHHHHHHHHHHH CS
       SRP54  2 nvillvGlqGaGKTttlaKLaallk 26
                + il++G++G+GKT  + +La++ +
  KOO23192.1  3 KNILMIGPTGVGKTEIARRLAKMAR 27
                679**************99999876 PP

>> IPT  Isopentenyl transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   0.00031      0.24       5      31 ..       6      32 ..       2      37 .. 0.89
   2 ?   -0.3   0.1      0.73   5.7e+02     132     188 ..     138     197 ..     131     210 .. 0.71

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00031
         IPT  5 lifGatttGKtaeaiklaketgapviv 31
                l+ G+t++GKt+ a +lak   ap i 
  KOO23192.1  6 LMIGPTGVGKTEIARRLAKMARAPFIK 32
                889*****************9999886 PP

  == domain 2  score: -0.3 bits;  conditional E-value: 0.73
         IPT 132 lakakkRvrqmlrpe...eegaslldElaelwkepkarailedidGyryildyarkkkvt 188
                 +++ + R  +m++++   e+++ ll++ + + +e + ++++++ d  r +++  +++ + 
  KOO23192.1 138 MNEIILRFDKMMHGRqkmEKREMLLKDSVPILTELESEKMINEDDIKRSAIHLIEQEGIV 197
                 667778899999887222456778999999999999999998888888888887777654 PP

>> AAA_24  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.1    0.0001      0.08       1      32 [.       1      34 [.       1     186 [. 0.86

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 0.0001
      AAA_24  1 kklkiliyGpsgiGKTtlakel..gpkplfidte 32
                ++++il++Gp g+GKT +a++l    ++ fi +e
  KOO23192.1  1 MPKNILMIGPTGVGKTEIARRLakMARAPFIKVE 34
                5789*****************9765566666444 PP

>> TniB  Bacterial TniB protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   0.00022      0.17      36      60 ..       3      27 ..       1      44 [. 0.85
   2 ?   -2.1   0.1       2.8   2.2e+03     105     132 ..     181     206 ..     166     210 .. 0.66

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00022
        TniB 36 pnlllvGdsnnGKtmivekFarlhp 60
                +n+l++G++ +GKt i+++ a++ +
  KOO23192.1  3 KNILMIGPTGVGKTEIARRLAKMAR 27
                79*****************999875 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 2.8
        TniB 105 skleqqvlrllrelkvrvLiiDEihnll 132
                 +++++ +++l+++    ++ iDEi+++ 
  KOO23192.1 181 DDIKRSAIHLIEQE--GIVFIDEIDKIC 206
                 55666667777754..578899999886 PP

>> AAA_7  P-loop containing dynein motor region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   0.00016      0.13      34      58 ..       3      27 ..       1      41 [. 0.81

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 0.00016
       AAA_7 34 kpvllvGptGtGKtviikdllkkld 58
                k++l++GptG+GKt i+++l k   
  KOO23192.1  3 KNILMIGPTGVGKTEIARRLAKMAR 27
                799*************999877655 PP

>> Roc  Ras of Complex, Roc, domain of DAPkinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   0.00028      0.22       2      25 ..       5      28 ..       4      63 .. 0.80

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.00028
                EEEESSTTSSHHHHHHCHCT-CCC CS
         Roc  2 vvlvGdsgvGKtsllkrfvedkfs 25
                ++++G +gvGKt +++r+ +    
  KOO23192.1  5 ILMIGPTGVGKTEIARRLAKMARA 28
                89***************9976654 PP

>> DEAD  DEAD/DEAH box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.4   3.0    0.0022       1.7      15      78 ..       3     315 ..       1     370 [. 0.70

  Alignments for each domain:
  == domain 1  score: 8.4 bits;  conditional E-value: 0.0022
                 CEEEEEESTTSSHHHHHHHHHHHHHHHS...TTSTS............................................................... CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxx............................................................... RF
        DEAD  15 gdvlvaaeTGsGKTlaflipvlqivyet...kgktg............................................................... 47 
                 +++l+ ++TG GKT+++   +   +++    k + +                                                               
  KOO23192.1   3 KNILMIGPTGVGKTEIARRLAK--MARApfiKVEATkftevgfvgkdvdqiirdladtgiqiakaramekikekvtarveeklldclvgpsniqhnrea 99 
                 689************9644332..222233322222344566666677777777777777777777777777777777777777777777777777777 PP

                 ................................................................................................... CS
                 ................................................................................................... RF
        DEAD  48 ................................................................................................... 47 
                                                                                                                    
  KOO23192.1 100 frkllrmghlddrlieievpekksgnpqfeggggnqfpmneiilrfdkmmhgrqkmekremllkdsvpiltelesekmineddikrsaihlieqegivf 198
                 777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 PP

                 ......................................................................................-EEEEEESSHHHH CS
                 ......................................................................................xxxxxxxxxxxxx RF
        DEAD  48 ......................................................................................pkalivePtreLa 60 
                                                                                                          ++ eP   L+
  KOO23192.1 199 ideidkicskndfrgsadassegvqrdllpllegsqvqtkhgnintdhilficsgafhyckpsdllaelqgrlpirvelksltendLHRVLTEPENNLV 297
                 777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 PP

                 HHHHHHHHHHTTTSTSEE CS
                 xxxxxxxxxxxxxxxxxx RF
        DEAD  61 eqtlnnlkkfkkyidlrv 78 
                 +q++  +k+   ++++++
  KOO23192.1 298 KQQVAMMKTENVELQITE 315
                 777777776655555444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (388 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       945  (0.0527079); expected 358.6 (0.02)
Passed bias filter:                      636  (0.0354733); expected 358.6 (0.02)
Passed Vit filter:                        98  (0.005466); expected 17.9 (0.001)
Passed Fwd filter:                        23  (0.00128284); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              23  [number of targets reported over threshold]
# CPU time: 0.59u 0.32s 00:00:00.90 Elapsed: 00:00:00.45
# Mc/sec: 2599.62
//
Query:       KOO23193.1  [L=458]
Description: zeaxanthin epoxidase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    9.9e-20   71.1   0.0    7.5e-19   68.2   0.0    2.1  1  FAD_binding_3  FAD binding domain
    2.5e-05   24.4   0.1    5.4e-05   23.3   0.1    1.6  1  NAD_binding_8  NAD(P)-binding Rossmann-like domain
    0.00056   19.1   0.1     0.0012   18.1   0.1    1.5  1  FAD_binding_2  FAD binding domain
     0.0025   17.1   0.3      0.013   14.8   0.1    2.0  2  Pyr_redox_2    Pyridine nucleotide-disulphide oxidoreductase
     0.0043   16.2   0.0     0.0063   15.6   0.0    1.2  1  SE             Squalene epoxidase
     0.0049   16.5   0.5       0.33   10.5   0.0    2.5  3  DAO            FAD dependent oxidoreductase
  ------ inclusion threshold ------
      0.057   12.7   0.0      0.088   12.1   0.0    1.3  1  Amino_oxidase  Flavin containing amine oxidoreductase
       0.13   11.6   0.0       0.18   11.1   0.0    1.2  1  FAD_oxidored   FAD dependent oxidoreductase


Domain annotation for each model (and alignments):
>> FAD_binding_3  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   68.2   0.0   3.3e-22   7.5e-19       6     345 ..       2     344 ..       1     348 [. 0.75

  Alignments for each domain:
  == domain 1  score: 68.2 bits;  conditional E-value: 3.3e-22
                    EE--SHHHHHHHHHHHHTTHHEEEEESSSSSCCSSS--EEEHHHHHHHH..HTT-HHHHHHHSEECCCCEEEEEEECCCC..CEEEEEHH....CH CS
  FAD_binding_3   6 IVGaGpaGlmlallLseaGvrvvlvekrsttvvlpradglnqrtmellr..qlGledrilaegapnelmgealynelsdt..pkaradle....le 93 
                    + G+G  Gl +al+L+++G +v + ek +t  + +    + +  +e+l   ++G+ ++i +++++    +  l+    d   ++  a  +    ++
     KOO23193.1   2 VAGGGIGGLCAALVLKNQGFDVSVFEKTETYKPFGGPIQIASNALESLLriDAGVYKQIMSQATVIGDRKNGLK----DGlsSEWFATFDlyspAK 93 
                    78*********************************999********9853479**********55443333333....333534444444335667 PP

                    HCST-CEE-.-HHHHHHHHHHHHHHHTEEETCSEEEECCEECCCCCCCEEEECCTTEEEEEEEEEEEE--GTT-HHHHHHTGGEEEEEEEEEEEEE CS
  FAD_binding_3  94 sspervtvy.pqteleriLvehaeerglqvrfktevesleqdeegvtaevrdketgeeetvrakYlvGaDGgrStvrktlgiefegeetvyeagvl 188
                    ++ ++v+v+   ++l+ iL+++    g  v+ ++ev++ e    +   +v +  ++ + + +a+ lvGaDG +S+vr+ l+ + +  + v      
     KOO23193.1  94 ARNQDVSVViDRPKLQDILLSA---IGDCVQTGAEVVGYEPSAAN--GRVIGILSDGT-RHEADMLVGADGIWSKVRAVLDPNPK--DPVWSGYTC 181
                    7777776651567888888887...88899*******77766665..66666666666.689*******************6633..333222222 PP

                    EEEEEC.-SCCCTTCCEEEEECCTTEEEEEECCETEEEEEEEEECCE-GGGS....CCCHHHHHHHHHHHHHHTTSSCEEEEEEEEEEEEEEEEES CS
  FAD_binding_3 189 dvlfda.dlsdiveplvlilsaesrgvmviPlentlerfyvqvearaekeer....sekfteeevkarlreivgektldveieevsawtvaqrvae 279
                     + ++    +di e  + ++  + + +  + +  +++++y ++++ ++  +     + +  +e   +++  +v++    ++ieev++ ++ +r+ e
     KOO23193.1 182 FAAIANcVPDDIKEVGYKVYLGSRKYFVSVDVGGGRVQWYAFLNVPPKSLSLapgdQLRWLKETQFNDWSPEVHQLLDSTPIEEVEQRDLYDRIPE 277
                    22223313333333344444444455456666666778888877776654433322445566888899999999999999*************987 PP

                    .SSEETTEEE-GGGTEEE-STTSHHHHHHHHHHHHHHHHHHHHHTTSS-GGGGHHHHHHHHHHHHHH CS
  FAD_binding_3 280 .kyrkgrvflaGDAaHihpPtgGqGlNtaiqDavnLawkLaavlkGeAkeelLdtYeeerravaqav 345
                     ++ +grv+l GDAaH + P  GqG  +ai+Da  L+  L    + eA +  L  Y+++r  +a+av
     KOO23193.1 278 lRWASGRVCLLGDAAHPMMPNLGQGGGMAIEDALVLGQELRRIGTPEAVPLALTKYNNNRVVRAAAV 344
                    79**********************************************************9999887 PP

>> NAD_binding_8  NAD(P)-binding Rossmann-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.3   0.1   2.4e-08   5.4e-05       1      29 [.       2      30 ..       2      54 .. 0.93

  Alignments for each domain:
  == domain 1  score: 23.3 bits;  conditional E-value: 2.4e-08
                   EE--SHHHHHHHHHHHCCTEEEEEE-SSS CS
  NAD_binding_8  1 IvGaGlsGlvaAylLakagfdvlllekrd 29
                   + G+G++Gl+aA  L+++gfdv ++ek +
     KOO23193.1  2 VAGGGIGGLCAALVLKNQGFDVSVFEKTE 30
                   56************************975 PP

>> FAD_binding_2  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.1   0.1   5.2e-07    0.0012       4      33 ..       2      31 ..       1      54 [. 0.88

  Alignments for each domain:
  == domain 1  score: 18.1 bits;  conditional E-value: 5.2e-07
                   EE--SHHHHHHHHHHHHTTT-EEEEESSSG CS
  FAD_binding_2  4 ViGsGlAGLaAAleaaeaGlkvavvekeqe 33
                   V G+G++GL+AAl ++++G +v v ek++ 
     KOO23193.1  2 VAGGGIGGLCAALVLKNQGFDVSVFEKTET 31
                   89*************************974 PP

>> Pyr_redox_2  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.1   5.6e-06     0.013       4      42 ..       1      40 [.       1     109 [. 0.83
   2 ?    0.1   0.0      0.17   3.8e+02     200     237 ..     120     159 ..     105     165 .. 0.79

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 5.6e-06
                 EEE--SHHHHHHHHHHHHHTS-EEEEE.TTHCHHHCSHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxx RF
  Pyr_redox_2  4 vviGgGpAGlaaaltlaqagakvtlve.legtclnggcll 42
                 +v GgG++Gl aal l+++g++v ++e  e++ ++gg++ 
   KOO23193.1  1 MVAGGGIGGLCAALVLKNQGFDVSVFEkTETYKPFGGPIQ 40
                 688***********************97777777777765 PP

  == domain 2  score: 0.1 bits;  conditional E-value: 0.17
                  EEESCEEEEEEETTE..EEEEEETTSCEEEESEEEE-S-E CS
                  xxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2 200 vklgtsvkeidgnge..klevvledgeeidadlvvvavGv 237
                  v++g++v+  ++     ++  +l+dg++ +ad++v a G+
   KOO23193.1 120 VQTGAEVVGYEPSAAngRVIGILSDGTRHEADMLVGADGI 159
                  5677777777777765556689999999999999988775 PP

>> SE  Squalene epoxidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.0   2.8e-06    0.0063       2     187 ..     150     337 ..     149     358 .. 0.74

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 2.8e-06
          SE   2 AkltvvcDGifsklRkels.dnkvevtssfvGlv.lknael..pkknkghvilgkpspvllYqisstetRil..veikskklPsiangelkeylkeeva 94 
                 A + v +DGi+sk+R  l  ++k  v+s +  +  + n+    +k+   +v lg+  + +  +++   +     ++++ k l s a g+  ++lke+  
  KOO23193.1 150 ADMLVGADGIWSKVRAVLDpNPKDPVWSGYTCFAaIANCVPddIKEVGYKVYLGSRKYFVSVDVGGGRVQWYafLNVPPKSL-SLAPGDQLRWLKETQF 247
                 789999*************888999*998877751456543103444569*****999999999988777541145555544.557888899***9998 PP

          SE  95 PqlPkelrksfkka.leegklrsmpnkflpasknekkGlillGDalnmRHPltggGmtvalnDivllskllkpledlsdeekvleelksfyvkR 187
                      e+++ ++++ +ee + r +   ++p  +  +  ++llGDa     P  g G  +a++D+++l + l+ +      e+v  +l+++  +R
  KOO23193.1 248 NDWSPEVHQLLDSTpIEEVEQRDLYD-RIPELRWASGRVCLLGDAAHPMMPNLGQGGGMAIEDALVLGQELRRI---GTPEAVPLALTKYNNNR 337
                 88888888888765266667777665.67888888889*******9988999988888899******9999877...55555655666665555 PP

>> DAO  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.5   0.0   0.00015      0.33       4      29 ..       2      29 ..       1      36 [. 0.91
   2 ?    3.4   0.0     0.021        48     163     207 ..     120     165 ..     108     187 .. 0.73
   3 ?   -2.3   0.0       1.2   2.6e+03     109     127 ..     235     253 ..     205     261 .. 0.74

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00015
                EECTSHHHHHHHHHHHHTT..EEEEESS CS
         DAO  4 iiGGGiiGlstAyeLarrg..Vtllekg 29
                + GGGi Gl++A+ L  +g  V ++ek 
  KOO23193.1  2 VAGGGIGGLCAALVLKNQGfdVSVFEKT 29
                67*************9889*******97 PP

  == domain 2  score: 3.4 bits;  conditional E-value: 0.021
                 EEESECEEEEEEEE..TCEEEEEEECTEEEEEEEEEEE--GGGHH.HH CS
         DAO 163 ilegtevtgleeed..gkvwgverttpgendaadavVnaaGawsd.ll 207
                 + +g+ev+g e     g+v g+   ++g++++ad +V a G+ws+  +
  KOO23193.1 120 VQTGAEVVGYEPSAanGRVIGI--LSDGTRHEADMLVGADGIWSKvRA 165
                 4567777777442244999999..55588877799********97533 PP

  == domain 3  score: -2.3 bits;  conditional E-value: 1.2
                 TTTTEEEEEHHHHHHHSTT CS
         DAO 109 agldaelldaeevrelepa 127
                  g + ++l++ + ++++p 
  KOO23193.1 235 PGDQLRWLKETQFNDWSPE 253
                 3334499*9999****995 PP

>> Amino_oxidase  Flavin containing amine oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   3.9e-05     0.088       1      23 [.       7      29 ..       7      32 .. 0.92

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 3.9e-05
                   HHHHHHHHHHHHTTEEEEEEESS CS
  Amino_oxidase  1 laGLaaArqLlsaGfdVtvlEar 23
                   + GL+aA  L+++GfdV+v+E +
     KOO23193.1  7 IGGLCAALVLKNQGFDVSVFEKT 29
                   68*******************86 PP

>> FAD_oxidored  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   8.1e-05      0.18       3      32 ..       1      30 [.       1      98 [. 0.90

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 8.1e-05
  FAD_oxidored  3 vVvGGgpaGvaAAiaAaraGakvlLveerg 32
                  +V GGg++G++AA+  +++G  v + e+++
    KOO23193.1  1 MVAGGGIGGLCAALVLKNQGFDVSVFEKTE 30
                  59**********************999875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (458 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       252  (0.0140554); expected 358.6 (0.02)
Passed bias filter:                      248  (0.0138323); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.51u 0.27s 00:00:00.78 Elapsed: 00:00:00.42
# Mc/sec: 3279.99
//
Query:       KOO23194.1  [L=184]
Description: centrin [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    5.1e-33  110.1  15.8    8.4e-09   34.4   0.8    4.2  4  EF-hand_1     EF hand
    2.6e-31  107.9  10.1    8.3e-16   58.2   1.3    2.1  2  EF-hand_7     EF-hand domain pair
      6e-27   91.2  10.1    1.1e-09   37.4   0.1    4.2  4  EF-hand_6     EF-hand domain
    1.3e-24   85.8  15.4      1e-11   44.5   0.9    4.1  4  EF-hand_8     EF-hand domain pair
    3.5e-18   64.2  15.7      2e-05   23.8   0.1    4.5  4  EF-hand_5     EF hand
    4.9e-15   55.6   0.6    1.4e-07   31.7   0.1    2.1  2  EF-hand_9     EF-hand domain
    2.3e-07   30.7   7.9      0.058   13.4   0.8    3.5  3  EF-hand_4     Cytoskeletal-regulatory complex EF hand
    0.00012   22.4   1.5      0.033   14.5   0.2    2.3  2  EF-hand_14    EF-hand domain
     0.0017   18.2   0.5        1.3    8.8   0.0    2.1  2  SurA_N_3      SurA N-terminal domain
  ------ inclusion threshold ------
      0.011   15.9   2.9      0.062   13.5   0.2    2.4  2  Dockerin_1    Dockerin type I domain
      0.014   15.7   0.2        2.9    8.3   0.1    2.1  2  SPARC_Ca_bdg  Secreted protein acidic and rich in cysteine Ca
      0.015   15.2   1.5        4.3    7.3   0.3    3.1  3  TerB          Tellurite resistance protein TerB
      0.023   14.6   0.4        3.1    7.7   0.0    3.0  3  Caleosin      Caleosin related protein
      0.038   13.8   0.2      0.083   12.7   0.2    1.5  1  SUB1_ProdP9   SUB1 protease Prodomain ProdP9
      0.043   14.0   2.3       0.25   11.6   0.1    2.4  2  DUF3008       Protein of unknwon function (DUF3008)
       0.12   12.5   2.0        2.2    8.4   0.1    2.9  3  Skp1          Skp1 family, dimerisation domain
       0.12   12.8   0.0         10    6.6   0.0    2.4  2  SPK           Domain of unknown function (DUF545)
       0.22   11.4   1.0        1.7    8.5   0.3    2.3  2  SurA_N_2      SurA N-terminal domain


Domain annotation for each model (and alignments):
>> EF-hand_1  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.3   0.0   1.8e-11   1.8e-08       1      29 []      40      68 ..      40      68 .. 0.95
   2 !   34.4   0.8   8.4e-12   8.4e-09       2      27 ..      77     102 ..      76     104 .. 0.94
   3 !   21.2   0.2   1.4e-07   0.00014       1      28 [.     113     140 ..     113     141 .. 0.91
   4 !   30.3   1.2   1.7e-10   1.7e-07       1      27 [.     149     175 ..     149     175 .. 0.96

  Alignments for each domain:
  == domain 1  score: 33.3 bits;  conditional E-value: 1.8e-11
                HHHHHHHHHTTTSSSEEEHHHHHHHHHHH CS
   EF-hand_1  1 elkeiFrefDkDgdGkIdfeEfkellkkl 29
                el+e+F++fD+Dg+G+Id +E++ +l++l
  KOO23194.1 40 ELREAFDLFDTDGSGTIDTKELQVALRAL 68
                79***********************9975 PP

  == domain 2  score: 34.4 bits;  conditional E-value: 8.4e-12
                 HHHHHHHHTTTSSSEEEHHHHHHHHH CS
   EF-hand_1   2 lkeiFrefDkDgdGkIdfeEfkellk 27 
                 ++++++++D Dg+G+IdfeEf+e+++
  KOO23194.1  77 VRKMIADIDLDGSGTIDFEEFVEMMT 102
                 89***********************8 PP

  == domain 3  score: 21.2 bits;  conditional E-value: 1.4e-07
                 HHHHHHHHHTTTSSSEEEHHHHHHHHHH CS
   EF-hand_1   1 elkeiFrefDkDgdGkIdfeEfkellkk 28 
                 e++++F++fD D +GkI+f  +k++ ++
  KOO23194.1 113 EIRRVFKLFDDDETGKISFRNLKRVARE 140
                 799*****************99998765 PP

  == domain 4  score: 30.3 bits;  conditional E-value: 1.7e-10
                 HHHHHHHHHTTTSSSEEEHHHHHHHHH CS
   EF-hand_1   1 elkeiFrefDkDgdGkIdfeEfkellk 27 
                 el+e+++++D DgdG ++ +Ef+++++
  KOO23194.1 149 ELQEMINKADLDGDGEVNEDEFMRIMT 175
                 79***********************96 PP

>> EF-hand_7  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.2   1.3   8.4e-19   8.3e-16       2      70 ..      39     101 ..      38     102 .. 0.96
   2 !   54.8   2.0   9.4e-18   9.3e-15       2      70 ..     112     174 ..     111     175 .. 0.97

  Alignments for each domain:
  == domain 1  score: 58.2 bits;  conditional E-value: 8.4e-19
   EF-hand_7   2 eklkeaFkelDtdgdgyldkeellrllrkifqgagegsklsdeelellfkefDtdkdGvisfdEFlkly 70 
                 ++l+eaF+++Dtdg+g +d  el+ +lr        g+++ +e++++++ ++D+d++G+i+f+EF++++
  KOO23194.1  39 QELREAFDLFDTDGSGTIDTKELQVALR------ALGFDSKKEKVRKMIADIDLDGSGTIDFEEFVEMM 101
                 689*********************9999......99999999*************************99 PP

  == domain 2  score: 54.8 bits;  conditional E-value: 9.4e-18
   EF-hand_7   2 eklkeaFkelDtdgdgyldkeellrllrkifqgagegsklsdeelellfkefDtdkdGvisfdEFlkly 70 
                 e+++++Fk++D d +g+++ + l+r+ r      + g++++deel++++++ D+d+dG+++ dEF++++
  KOO23194.1 112 EEIRRVFKLFDDDETGKISFRNLKRVAR------ELGENMTDEELQEMINKADLDGDGEVNEDEFMRIM 174
                 689*************************......********************************999 PP

>> EF-hand_6  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.4   0.1   1.1e-12   1.1e-09       1      31 []      40      69 ..      40      69 .. 0.96
   2 !   19.1   0.1   8.5e-07   0.00085       8      27 ..      83     102 ..      76     106 .. 0.86
   3 !   22.8   0.2   5.3e-08   5.2e-05       1      31 []     113     142 ..     113     142 .. 0.93
   4 !   16.4   0.2   6.1e-06    0.0061       2      27 ..     150     175 ..     149     177 .. 0.90

  Alignments for each domain:
  == domain 1  score: 37.4 bits;  conditional E-value: 1.1e-12
   EF-hand_6  1 elreaFklfDkdgdGkidaeElrkalrkalg 31
                elreaF+lfD+dg+G+id++El+ alr alg
  KOO23194.1 40 ELREAFDLFDTDGSGTIDTKELQVALR-ALG 69
                79*************************.887 PP

  == domain 2  score: 19.1 bits;  conditional E-value: 8.5e-07
   EF-hand_6   8 lfDkdgdGkidaeElrkalr 27 
                  +D dg+G+id+eE++ +++
  KOO23194.1  83 DIDLDGSGTIDFEEFVEMMT 102
                 58****************98 PP

  == domain 3  score: 22.8 bits;  conditional E-value: 5.3e-08
   EF-hand_6   1 elreaFklfDkdgdGkidaeElrkalrkalg 31 
                 e+r++FklfD d +Gki++  l+++ r +lg
  KOO23194.1 113 EIRRVFKLFDDDETGKISFRNLKRVAR-ELG 142
                 79*********************9999.776 PP

  == domain 4  score: 16.4 bits;  conditional E-value: 6.1e-06
   EF-hand_6   2 lreaFklfDkdgdGkidaeElrkalr 27 
                 l+e  ++ D dgdG+++ +E++++++
  KOO23194.1 150 LQEMINKADLDGDGEVNEDEFMRIMT 175
                 77778899***************997 PP

>> EF-hand_8  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5   0.1   2.7e-06    0.0027      26      48 ..      39      61 ..      37      66 .. 0.89
   2 !   35.8   0.9   5.5e-12   5.4e-09       2      53 ..      53     102 ..      53     103 .. 0.95
   3 !   14.1   0.1   3.1e-05     0.031      24      45 ..     110     131 ..     105     133 .. 0.96
   4 !   44.5   0.9     1e-14     1e-11       1      52 [.     125     174 ..     125     175 .. 0.95

  Alignments for each domain:
  == domain 1  score: 17.5 bits;  conditional E-value: 2.7e-06
   EF-hand_8 26 eevdilfrefDtdgdGkisfeEF 48
                +e+++ f++fDtdg+G+i+ +E 
  KOO23194.1 39 QELREAFDLFDTDGSGTIDTKEL 61
                799****************9996 PP

  == domain 2  score: 35.8 bits;  conditional E-value: 5.5e-12
   EF-hand_8   2 kgkItreelrrilrilglkkglseeevdilfrefDtdgdGkisfeEFcvlle 53 
                 +g I++ el+ +lr+lg      +e+v+ ++  +D+dg+G+i+feEF+++++
  KOO23194.1  53 SGTIDTKELQVALRALGFD--SKKEKVRKMIADIDLDGSGTIDFEEFVEMMT 102
                 589**********999988..99999************************95 PP

  == domain 3  score: 14.1 bits;  conditional E-value: 3.1e-05
   EF-hand_8  24 seeevdilfrefDtdgdGkisf 45 
                 s+ee++ +f++fD d+ Gkisf
  KOO23194.1 110 SPEEIRRVFKLFDDDETGKISF 131
                 79*******************8 PP

  == domain 4  score: 44.5 bits;  conditional E-value: 1e-14
   EF-hand_8   1 ekgkItreelrrilrilglkkglseeevdilfrefDtdgdGkisfeEFcvll 52 
                 e+gkI++ +l+r +r lg +  +++ee++++++++D+dgdG ++ +EF+  +
  KOO23194.1 125 ETGKISFRNLKRVARELGEN--MTDEELQEMINKADLDGDGEVNEDEFMRIM 174
                 69**********99****99..**************************9766 PP

>> EF-hand_5  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.8   0.1   2.1e-08     2e-05       1      22 [.      41      62 ..      41      65 .. 0.91
   2 !   22.3   0.4   6.4e-08   6.4e-05       4      25 .]      80     101 ..      77     101 .. 0.85
   3 !    7.0   0.2    0.0044       4.4       1      19 [.     114     132 ..     114     138 .. 0.83
   4 !   20.0   0.9   3.5e-07   0.00034       1      25 []     150     174 ..     148     174 .. 0.92

  Alignments for each domain:
  == domain 1  score: 23.8 bits;  conditional E-value: 2.1e-08
                HHHHHHHH-SS-SSCE-HHHHH CS
   EF-hand_5  1 lkdtFqaiDlNgDGkIskeELk 22
                l+++F+ +D++g+G+I+  EL+
  KOO23194.1 41 LREAFDLFDTDGSGTIDTKELQ 62
                6788*****************8 PP

  == domain 2  score: 22.3 bits;  conditional E-value: 6.4e-08
                 HHHHH-SS-SSCE-HHHHHHHH CS
   EF-hand_5   4 tFqaiDlNgDGkIskeELktlv 25 
                 +   iDl+g+G+I++eE+ +++
  KOO23194.1  80 MIADIDLDGSGTIDFEEFVEMM 101
                 56679*************9876 PP

  == domain 3  score: 7.0 bits;  conditional E-value: 0.0044
                 HHHHHHHH-SS-SSCE-HH CS
   EF-hand_5   1 lkdtFqaiDlNgDGkIske 19 
                 ++ +F+ +D +  GkIs+ 
  KOO23194.1 114 IRRVFKLFDDDETGKISFR 132
                 5679*************86 PP

  == domain 4  score: 20.0 bits;  conditional E-value: 3.5e-07
                 HHHHHHHH-SS-SSCE-HHHHHHHH CS
   EF-hand_5   1 lkdtFqaiDlNgDGkIskeELktlv 25 
                 l+++ +++Dl+gDG ++ +E+++++
  KOO23194.1 150 LQEMINKADLDGDGEVNEDEFMRIM 174
                 678899***************9976 PP

>> EF-hand_9  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.6   0.1   9.6e-08   9.6e-05       3      63 ..      44     102 ..      42     105 .. 0.95
   2 !   31.7   0.1   1.4e-10   1.4e-07       2      63 ..     116     175 ..     115     178 .. 0.93

  Alignments for each domain:
  == domain 1  score: 22.6 bits;  conditional E-value: 9.6e-08
   EF-hand_9   3 vFevcDtqktGrVpvsrlidyLravtaqdpeeseLeelakelDPdgedasvdldtflrvmr 63 
                  F+++Dt+  G++  ++l   Lra +  d++  ++ +  + +D dg  +++d++ f ++m 
  KOO23194.1  44 AFDLFDTDGSGTIDTKELQVALRALGF-DSKKEKVRKMIADIDLDGS-GTIDFEEFVEMMT 102
                 5**************************.99999**************.**********996 PP

  == domain 2  score: 31.7 bits;  conditional E-value: 1.4e-10
   EF-hand_9   2 tvFevcDtqktGrVpvsrlidyLravtaqdpeeseLeelakelDPdgedasvdldtflrvmr 63 
                 +vF+++D ++tG++   +l+ + r  +++  ++ eL+e  +++D dg  ++v+ d f r+m 
  KOO23194.1 116 RVFKLFDDDETGKISFRNLKRVARELGEN-MTDEELQEMINKADLDGD-GEVNEDEFMRIMT 175
                 69**************************5.56779************9.************6 PP

>> EF-hand_4  Cytoskeletal-regulatory complex EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.8   0.0    0.0015       1.5      42      74 ..      38      71 ..      33      80 .. 0.83
   2 !   11.6   0.4    0.0002       0.2      43      69 ..      75     101 ..      70     106 .. 0.69
   3 !   13.4   0.8   5.8e-05     0.058       7      69 ..     112     174 ..     105     180 .. 0.73

  Alignments for each domain:
  == domain 1  score: 8.8 bits;  conditional E-value: 0.0015
   EF-hand_4 42 edklekiwdladidedgkldfeefciamr.lifd 74
                 ++l + +dl d d  g++d +e+ +a+r l fd
  KOO23194.1 38 MQELREAFDLFDTDGSGTIDTKELQVALRaLGFD 71
                6789999*********************934476 PP

  == domain 2  score: 11.6 bits;  conditional E-value: 0.0002
   EF-hand_4  43 dklekiwdladidedgkldfeefciam 69 
                 +k+ k+    d+d  g++dfeef+ +m
  KOO23194.1  75 EKVRKMIADIDLDGSGTIDFEEFVEMM 101
                 44455544455666689******9877 PP

  == domain 3  score: 13.4 bits;  conditional E-value: 5.8e-05
   EF-hand_4   7 leikkyweifsglkpednkltgdkvapvlkn..skleedklekiwdladidedgkldfeefciam 69 
                  ei++ +++f   +    k++  ++  v ++   ++++++l+++ + ad+d dg+++ +ef+ +m
  KOO23194.1 112 EEIRRVFKLFDDDETG--KISFRNLKRVARElgENMTDEELQEMINKADLDGDGEVNEDEFMRIM 174
                 5777777777755444..44444444444432168999***********************9887 PP

>> EF-hand_14  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.1   0.1    0.0068       6.7       6      45 ..      45      84 ..      42     102 .. 0.91
   2 !   14.5   0.2   3.3e-05     0.033       5      46 ..     117     158 ..     114     182 .. 0.85

  Alignments for each domain:
  == domain 1  score: 7.1 bits;  conditional E-value: 0.0068
  EF-hand_14  6 fdlfkdeetdklsvakllkaLaetGirkdDpRLkellkkl 45
                fdlf++++++++  ++l  aL++ G  ++  ++++++  +
  KOO23194.1 45 FDLFDTDGSGTIDTKELQVALRALGFDSKKEKVRKMIADI 84
                9*************************99999998888765 PP

  == domain 2  score: 14.5 bits;  conditional E-value: 3.3e-05
  EF-hand_14   5 lfdlfkdeetdklsvakllkaLaetGirkdDpRLkellkklk 46 
                 +f+lf+d+et+k+s+ +l ++ +e G + +D  L+e+++k  
  KOO23194.1 117 VFKLFDDDETGKISFRNLKRVARELGENMTDEELQEMINKAD 158
                 8************************************99865 PP

>> SurA_N_3  SurA N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.8   0.0    0.0013       1.3      91     139 ..      55     102 ..      39     118 .. 0.90
   2 !    8.1   0.1    0.0021       2.1      92     138 ..     129     174 ..     104     179 .. 0.88

  Alignments for each domain:
  == domain 1  score: 8.8 bits;  conditional E-value: 0.0013
    SurA_N_3  91 lidealllqeakklglsvsdeevakeiasipaFqedGkFdkerYkqlLa 139
                  id + l+ + + lg+  ++e+v+k+ia+i+ +  +G  d e++ +++ 
  KOO23194.1  55 TIDTKELQVALRALGFDSKKEKVRKMIADID-LDGSGTIDFEEFVEMMT 102
                 699999************************7.88999999999998876 PP

  == domain 2  score: 8.1 bits;  conditional E-value: 0.0021
    SurA_N_3  92 idealllqeakklglsvsdeevakeiasipaFqedGkFdkerYkqlL 138
                 i+ + l+  a++lg +++dee++++i + + +  dG+ +++++ +++
  KOO23194.1 129 ISFRNLKRVARELGENMTDEELQEMINKAD-LDGDGEVNEDEFMRIM 174
                 556678999*****************9986.999******9999887 PP

>> Dockerin_1  Dockerin type I domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.6   0.2      0.16   1.6e+02       3      45 ..      49      90 ..      47      98 .. 0.61
   2 ?   13.5   0.2   6.2e-05     0.062       8      54 ..     127     174 ..     120     176 .. 0.76

  Alignments for each domain:
  == domain 1  score: 2.6 bits;  conditional E-value: 0.16
                ETTSSSC-SHHHHHHHHHHCTSSEBTTSCCCHGGGSTT-SSCE CS
  Dockerin_1  3 DVNgDgkVnalDalliinylnqregqssssngkaaDvNgDGrv 45
                D +g+g+++   + +  ++l   + ++ + ++  aD++ DG+ 
  KOO23194.1 49 DTDGSGTIDTKELQVALRALG-FDSKKEKVRKMIADIDLDGSG 90
                777777777777777777777.444444445555555555543 PP

  == domain 2  score: 13.5 bits;  conditional E-value: 6.2e-05
                 SC-SHHHHHHHHHHCT.SSEBTTSCCCHGGGSTT-SSCESHHHHHHHH CS
  Dockerin_1   8 gkVnalDalliinyln.qregqssssngkaaDvNgDGrvnalDallvi 54 
                 gk++   + ++ ++l  + ++++ +++ ++aD++gDG+vn   +++++
  KOO23194.1 127 GKISFRNLKRVARELGeNMTDEELQEMINKADLDGDGEVNEDEFMRIM 174
                 5666666667777777666788889999************99888876 PP

>> SPARC_Ca_bdg  Secreted protein acidic and rich in cysteine Ca binding region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.6   0.0     0.019        19      57     111 ..      42      98 ..      30     100 .. 0.81
   2 ?    8.3   0.1    0.0029       2.9      56     112 ..     114     172 ..     106     173 .. 0.83

  Alignments for each domain:
  == domain 1  score: 5.6 bits;  conditional E-value: 0.019
  SPARC_Ca_bdg  57 awkFsklDtnsdkvlsksELa.plrapl..vklehCikpflescDadkdkkislkEwc 111
                   +  F+ +Dt+  ++++++EL+ +lra l  ++  + +++++   D+d  ++i+ +E++
    KOO23194.1  42 REAFDLFDTDGSGTIDTKELQvALRA-LgfDSKKEKVRKMIADIDLDGSGTIDFEEFV 98 
                   5579999***99********834555.4226777789999****************97 PP

  == domain 2  score: 8.3 bits;  conditional E-value: 0.0029
  SPARC_Ca_bdg  56 vawkFsklDtnsdkvlsksELaplraplvkl..ehCikpflescDadkdkkislkEwce 112
                   ++  F+ +D ++ + +s + L+ +  +l ++  ++  +++++++D+d d++++  E+++
    KOO23194.1 114 IRRVFKLFDDDETGKISFRNLKRVARELGENmtDEELQEMINKADLDGDGEVNEDEFMR 172
                   566788899999999999999999998854322778999*****************985 PP

>> TerB  Tellurite resistance protein TerB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.5   0.0      0.54   5.4e+02      56      80 ..      27      51 ..      20      61 .. 0.78
   2 ?    5.0   0.0     0.021        21      42      94 ..      54     104 ..      50     110 .. 0.90
   3 ?    7.3   0.3    0.0043       4.3      63     126 ..     110     172 ..     104     176 .. 0.68

  Alignments for each domain:
  == domain 1  score: 0.5 bits;  conditional E-value: 0.54
        TerB 56 lksrfglspeeakallelfeeaeee 80
                +++r g+++ ++++l+e+f+ + ++
  KOO23194.1 27 VAARPGIPEWQMQELREAFDLFDTD 51
                56788999999********998887 PP

  == domain 2  score: 5.0 bits;  conditional E-value: 0.021
        TerB  42 gqvsesErqafrellksrfglspeeakallelfeeaeeeavdleqftralkrk 94 
                 g+++ +E q   + l   f+ ++e++ + ++  +   + ++d+e+f++ +  k
  KOO23194.1  54 GTIDTKELQVALRAL--GFDSKKEKVRKMIADIDLDGSGTIDFEEFVEMMTGK 104
                 789999****99999..99999************************9988766 PP

  == domain 3  score: 7.3 bits;  conditional E-value: 0.0043
        TerB  63 speeakallelfeeaeeeavdl...eqftralkrklspeqrraliealweiAlADGeldeaEdavlr 126
                 spee+  +++lf++ e+ ++++    +++r+l++++++e++++    ++  A  DG+ + +Ed+++r
  KOO23194.1 110 SPEEIRRVFKLFDDDETGKISFrnlKRVARELGENMTDEELQE----MINKADLDGDGEVNEDEFMR 172
                 5788888888888888888886111455666666666666655....55567777777777777777 PP

>> Caleosin  Caleosin related protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.7   0.0    0.0032       3.1       4      37 ..      39      72 ..      37      86 .. 0.87
   2 ?    0.0   0.0      0.71   7.1e+02      93     124 ..      75     106 ..      71     113 .. 0.79
   3 ?    3.5   0.0     0.062        61      10      37 ..     118     145 ..     109     179 .. 0.79

  Alignments for each domain:
  == domain 1  score: 7.7 bits;  conditional E-value: 0.0032
    Caleosin  4 tvLqqHvaFfDrdkdGiiypldtyrgfralgfnv 37
                  L++ ++ fD+d  G+i   +   ++ralgf+ 
  KOO23194.1 39 QELREAFDLFDTDGSGTIDTKELQVALRALGFDS 72
                567778899**********************985 PP

  == domain 2  score: 0.0 bits;  conditional E-value: 0.71
    Caleosin  93 qkfeeifskyakekkdaltlkevlellkgqre 124
                 +k  ++ +  + + ++++ ++e++e+++g++ 
  KOO23194.1  75 EKVRKMIADIDLDGSGTIDFEEFVEMMTGKMG 106
                 56667777788888999999999999998875 PP

  == domain 3  score: 3.5 bits;  conditional E-value: 0.062
    Caleosin  10 vaFfDrdkdGiiypldtyrgfralgfnv 37 
                 ++ fD d+ G i + +  r  r+lg n+
  KOO23194.1 118 FKLFDDDETGKISFRNLKRVARELGENM 145
                 5567888888888888777777777766 PP

>> SUB1_ProdP9  SUB1 protease Prodomain ProdP9
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.2   8.4e-05     0.083      34      63 ..     128     156 ..     120     169 .. 0.84

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 8.4e-05
  SUB1_ProdP9  34 klanlknlksiiielkedttdeelieyiki 63 
                  k++ ++nlk +  el e++tdeel e i+ 
   KOO23194.1 128 KIS-FRNLKRVARELGENMTDEELQEMINK 156
                  544.79********************9975 PP

>> DUF3008  Protein of unknwon function (DUF3008)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.7   0.3       0.3     3e+02       8      28 ..      21      43 ..      15      45 .. 0.72
   2 ?   11.6   0.1   0.00025      0.25      19      46 ..     127     154 ..     125     160 .. 0.89

  Alignments for each domain:
  == domain 1  score: 1.7 bits;  conditional E-value: 0.3
     DUF3008  8 kAAGaALaAKrG..etkkseLkg 28
                k AG A aA+ G  e + +eL++
  KOO23194.1 21 KKAGGAVAARPGipEWQMQELRE 43
                67999****99854555666665 PP

  == domain 2  score: 11.6 bits;  conditional E-value: 0.00025
     DUF3008  19 GetkkseLkgaSksMyesMsekeLeelA 46 
                 G+ + ++Lk  ++++ e M+++eL+e+ 
  KOO23194.1 127 GKISFRNLKRVARELGENMTDEELQEMI 154
                 7778899*******************95 PP

>> Skp1  Skp1 family, dimerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.0       3.9   3.9e+03      20      28 ..      38      46 ..      37      49 .. 0.81
   2 ?    8.4   0.1    0.0023       2.2      14      32 ..     105     123 ..      99     130 .. 0.80
   3 ?    2.5   0.1      0.16   1.6e+02       9      28 ..     135     155 ..     134     167 .. 0.80

  Alignments for each domain:
  == domain 1  score: -1.9 bits;  conditional E-value: 3.9
        Skp1 20 peeiReiFn 28
                ++e+Re F 
  KOO23194.1 38 MQELREAFD 46
                689999996 PP

  == domain 2  score: 8.4 bits;  conditional E-value: 0.0023
        Skp1  14 mikgktpeeiReiFnIenD 32 
                 m +  +peeiR +F++ +D
  KOO23194.1 105 MGDRDSPEEIRRVFKLFDD 123
                 556689********99777 PP

  == domain 3  score: 2.5 bits;  conditional E-value: 0.16
        Skp1   9 ktvAdmi.kgktpeeiReiFn 28 
                 k+vA  + +++t ee+ e+ n
  KOO23194.1 135 KRVARELgENMTDEELQEMIN 155
                 788888866799999999988 PP

>> SPK  Domain of unknown function (DUF545)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6   0.0      0.01        10       1      49 [.      97     145 ..      97     159 .. 0.79
   2 ?    4.4   0.0     0.048        48      79      98 ..     159     178 ..     142     181 .. 0.79

  Alignments for each domain:
  == domain 1  score: 6.6 bits;  conditional E-value: 0.01
         SPK   1 llkflaektknatkplslkelckeFkeksgskesestlarrfrqllaki 49 
                 +++ +  k+ + ++p+ +++++k F + ++ k s + l+r  r+l +++
  KOO23194.1  97 FVEMMTGKMGDRDSPEEIRRVFKLFDDDETGKISFRNLKRVARELGENM 145
                 678889999****************888888888888877666555454 PP

  == domain 2  score: 4.4 bits;  conditional E-value: 0.048
         SPK  79 lrkdakveldeknrIikYks 98 
                 l  d++v+ de  rI+ Yk 
  KOO23194.1 159 LDGDGEVNEDEFMRIMTYKH 178
                 778899************96 PP

>> SurA_N_2  SurA N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.3   0.0      0.28   2.8e+02      94     124 ..      56      86 ..      53     105 .. 0.76
   2 ?    8.5   0.3    0.0018       1.7      98     143 ..     133     172 ..      93     174 .. 0.86

  Alignments for each domain:
  == domain 1  score: 1.3 bits;  conditional E-value: 0.28
    SurA_N_2  94 vseklleqeaeklGltvsdeelqdaiqgnpa 124
                 ++ k l+ +++ lG+   +e+++++i  +  
  KOO23194.1  56 IDTKELQVALRALGFDSKKEKVRKMIADIDL 86 
                 778888999999*************998554 PP

  == domain 2  score: 8.5 bits;  conditional E-value: 0.0018
    SurA_N_2  98 lleqeaeklGltvsdeelqdaiqgnpaikqsFqpetGkFdkeklkq 143
                  l+  a++lG +++deelq++i++         + +G+++++++ +
  KOO23194.1 133 NLKRVARELGENMTDEELQEMINKADL------DGDGEVNEDEFMR 172
                 578899*****************9887......5777777777765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (184 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       761  (0.0424452); expected 358.6 (0.02)
Passed bias filter:                      609  (0.0339673); expected 358.6 (0.02)
Passed Vit filter:                        73  (0.00407162); expected 17.9 (0.001)
Passed Fwd filter:                        18  (0.00100396); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              18  [number of targets reported over threshold]
# CPU time: 0.49u 0.27s 00:00:00.76 Elapsed: 00:00:00.43
# Mc/sec: 1295.67
//
Query:       KOO23195.1  [L=513]
Description: hypothetical protein Ctob_002881 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.14   12.3   0.3       0.34   11.0   0.3    1.6  1  DegQ       DegQ (SacQ) family
          1    9.8   3.5        3.2    8.2   0.0    3.2  3  E2F_CC-MB  E2F transcription factor CC-MB domain


Domain annotation for each model (and alignments):
>> DegQ  DegQ (SacQ) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.3   3.8e-05      0.34      15      36 ..      12      33 ..      10      35 .. 0.95

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 3.8e-05
        DegQ 15 rLEneirETtdSLrniNKSiDQ 36
                rLE ++  T + Lr+ NK iDQ
  KOO23195.1 12 RLEQQLFQTEEDLRKANKRIDQ 33
                89******************** PP

>> E2F_CC-MB  E2F transcription factor CC-MB domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.2   0.0   0.00035       3.2      33      70 ..      12      49 ..       4      73 .. 0.83
   2 ?   -0.7   0.2      0.21   1.9e+03      14      47 ..     236     267 ..     225     280 .. 0.60
   3 ?   -0.5   0.1      0.18   1.6e+03      53      71 ..     334     352 ..     298     390 .. 0.70

  Alignments for each domain:
  == domain 1  score: 8.2 bits;  conditional E-value: 0.00035
   E2F_CC-MB 33 eknqlaYvtyedirsiasfkeqtviaikAppgtqlevp 70
                  +q ++ t+ed+r+ ++  +q v+ ik  +g q  v 
  KOO23195.1 12 RLEQQLFQTEEDLRKANKRIDQHVLQIKTLQGRQTAVR 49
                3456899**********************999887665 PP

  == domain 2  score: -0.7 bits;  conditional E-value: 0.21
   E2F_CC-MB  14 kLDelieklteqlknltedeknqlaYvtyedirs 47 
                 ++ +l  +l++ ++ l+e++++ +a v ++d+r 
  KOO23195.1 236 EIVRLGTELEHMIELLKEEKRQ-RA-VDSQDLRC 267
                 4444444555555555444444.56.78888775 PP

  == domain 3  score: -0.5 bits;  conditional E-value: 0.18
   E2F_CC-MB  53 eqtviaikAppgtqlevpd 71 
                 e+ ++a++A   ++le+ +
  KOO23195.1 334 ERRLMAMRADARATLEAMN 352
                 4567777777777777654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (513 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1589  (0.0886274); expected 358.6 (0.02)
Passed bias filter:                      546  (0.0304535); expected 358.6 (0.02)
Passed Vit filter:                        56  (0.00312343); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.66u 0.26s 00:00:00.92 Elapsed: 00:00:00.43
# Mc/sec: 3600.69
//
Query:       KOO23196.1  [L=257]
Description: hypothetical protein Ctob_002886 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    0.00072   19.5   0.2       0.16   11.9   0.0    2.9  3  PAP_fibrillin  PAP_fibrillin


Domain annotation for each model (and alignments):
>> PAP_fibrillin  PAP_fibrillin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    3.6   0.0     0.003        55      31      58 ..       2      25 ..       1      28 [. 0.88
   2 ?    0.0   0.0     0.038   6.9e+02      71      87 ..      74      95 ..      65     104 .. 0.75
   3 !   11.9   0.0   8.7e-06      0.16     168     188 ..     219     239 ..     134     245 .. 0.57

  Alignments for each domain:
  == domain 1  score: 3.6 bits;  conditional E-value: 0.003
  PAP_fibrillin 31 lvkklealnptpaplesldlLdGkWrLl 58
                   l+++le+l p  + l     L+G+WrL+
     KOO23196.1  2 LIRRLESLAPDASAL----DLNGEWRLA 25
                   799999999999999....48*****97 PP

  == domain 2  score: 0.0 bits;  conditional E-value: 0.038
  PAP_fibrillin 71 rkklpllkvgeiyQtI.....d 87
                   ++ lp++++g++ Q+I     d
     KOO23196.1 74 TDTLPFYDIGNVVQRIsglcsD 95
                   68899**********9555554 PP

  == domain 3  score: 11.9 bits;  conditional E-value: 8.7e-06
  PAP_fibrillin 168 geeakgwLeitYlDedLRIsR 188
                    ++     L +tY++++LRIsR
     KOO23196.1 219 KRSSFVRLRTTYVSDTLRISR 239
                    333345799***********9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (257 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       393  (0.0219198); expected 358.6 (0.02)
Passed bias filter:                      323  (0.0180155); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.22s 00:00:00.62 Elapsed: 00:00:00.37
# Mc/sec: 2093.43
//
Query:       KOO23197.1  [L=821]
Description: hypothetical protein Ctob_002882 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.3e-58  198.5   0.0    5.7e-38  131.0   0.0    2.2  2  Nucleotid_trans  Nucleotide-diphospho-sugar transferase
  ------ inclusion threshold ------
       0.29   11.4   0.8        3.6    7.9   0.1    2.3  2  Tower            Tower


Domain annotation for each model (and alignments):
>> Nucleotid_trans  Nucleotide-diphospho-sugar transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  131.0   0.0   6.4e-42   5.7e-38       2     203 ..      93     302 ..      92     308 .. 0.96
   2 !   65.4   0.0   7.8e-22     7e-18       3     210 ..     446     690 ..     444     692 .. 0.87

  Alignments for each domain:
  == domain 1  score: 131.0 bits;  conditional E-value: 6.4e-42
  Nucleotid_trans   2 llenllvvAlDeealerckelgvpvlyltskgkdsakkdeefksktykkmswrkvrlllellklGynvllsDvDvvWlrnpfpllkyedaDvlv 95 
                      +++n++++A D+++ ++++++gv+ +++t                + +k+s+ k+  ++e+l+ G++vl+sD+Dvv+++npf  l ++d+D++ 
       KOO23197.1  93 KISNIMIIAIDNQLPQWLESKGVAFWKRTTS------------AAGSHKISAQKFGYVKEFLSIGCSVLMSDIDVVYIQNPFLSL-HKDSDIEG 173
                      689*********************9999987............46889*************************************.9******* PP

  Nucleotid_trans  96 ssDsldgttadelknli....................NsGfffvrateatkallkkwaeelasesglwDqdvfnlllregaake...sglkvrv 166
                       +D++d+ +a++ ++ +                    NsG++++rat+a++++++ ++ ++++e  +wDq++f + + ++a+++   +g++ r+
       KOO23197.1 174 TTDGWDDGSAYGWTEKLddpsmgatgrfrpamritawNSGLWYARATHASLRMMDILKYRMETE-DTWDQSAFGEEMSRPARDShlaGGITKRA 266
                      *************9999**********************************************9.55**************999********** PP

  Nucleotid_trans 167 Ldtalfvngkgyfvqvrdeeevktkkkpvavhanycs 203
                      L++++f+n+k+ f+ vr e ++ + +kpv+vhany+ 
       KOO23197.1 267 LNHWCFANSKTIFRRVRTEPRFAE-HKPVVVHANYHQ 302
                      ***************999999999.**********96 PP

  == domain 2  score: 65.4 bits;  conditional E-value: 7.8e-22
  Nucleotid_trans   3 lenllvvAlDeealerckelgvpvlyltsk.gkdsakkdeefksktykkmswrkvrlllellklGynvllsDvDvvWlrnpfpllkyedaDvlv 95 
                      + nll+++ De+++e++ e  +p        g+   + + + +s +  ++   + rll +ll+ G+ vl+  + +v+l npf++l y+daDv+ 
       KOO23197.1 446 IANLLLIVGDEATHEKIGEDAPPLASSSGGgGATYVSAELKAASGGARDVAVARYRLLSRLLSQGFGVLVAAPTTVFLSNPFQAL-YRDADVEA 538
                      689********************555555576667778888999*****************************************.******** PP

  Nucleotid_trans  96 ssDsldgttadelknli...................NsGfffvrateatkallkkwaeelasesglwDqdvfnlllregaake........... 159
                      +s ++d+ +a++ ++ +                     Gf ++ +t++++ l+ +++ +l   + +  q+  +l+    a ++           
       KOO23197.1 539 MSSGWDDGSAYGYNHVLddpsmgftrychgsrivayEPGFLYASPTNEAVTLMARMVVQLLGADSTGGQTRAKLAADASA-QQvieaerlaflh 631
                      ************************************9***********************99866666665555555433.3347778888888 PP

  Nucleotid_trans 160 ............sglkvrvLdtalfvngkgyfvqvrdeeevktkkkpvavhanycsgkedKlk 210
                                   g+ +rv+++ +f+n+k+ f++  + ++     kpvav++ny+ ++e+ ++
       KOO23197.1 632 elwlpshheyasVGAVLRVMNYLCFANSKTVFRT-LRANP---GMKPVAVQINYHADAESRMR 690
                      888888999*************************.33333...3558**********999886 PP

>> Tower  Tower
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.9   0.1    0.0004       3.6       6      23 ..     274     291 ..     272     302 .. 0.92
   2 ?    1.5   0.1     0.039   3.5e+02       6      16 ..     658     668 ..     656     669 .. 0.88

  Alignments for each domain:
  == domain 1  score: 7.9 bits;  conditional E-value: 0.0004
       Tower   6 dGgsVFRneRaEekeArk 23 
                 +++++FR  R E ++A++
  KOO23197.1 274 NSKTIFRRVRTEPRFAEH 291
                 899*************96 PP

  == domain 2  score: 1.5 bits;  conditional E-value: 0.039
       Tower   6 dGgsVFRneRa 16 
                 ++++VFR+ Ra
  KOO23197.1 658 NSKTVFRTLRA 668
                 899*****998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (821 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       370  (0.020637); expected 358.6 (0.02)
Passed bias filter:                      339  (0.0189079); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.61u 0.26s 00:00:00.87 Elapsed: 00:00:00.42
# Mc/sec: 5904.22
//
Query:       KOO23198.1  [L=193]
Description: hypothetical protein Ctob_002883 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (193 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       540  (0.0301188); expected 358.6 (0.02)
Passed bias filter:                      425  (0.0237046); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.39u 0.28s 00:00:00.67 Elapsed: 00:00:00.41
# Mc/sec: 1402.04
//
Query:       KOO23199.1  [L=466]
Description: hypothetical protein Ctob_002884 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.3e-07   31.7   0.0      1e-06   28.7   0.0    2.0  1  O-FucT      GDP-fucose protein O-fucosyltransferase
  ------ inclusion threshold ------
      0.025   14.4   1.4      0.048   13.5   1.4    1.4  1  PKcGMP_CC   Coiled-coil N-terminus of cGMP-dependent protein 
       0.12   12.2   0.5       0.22   11.3   0.5    1.3  1  She9_MDM33  She9 / Mdm33 family


Domain annotation for each model (and alignments):
>> O-FucT  GDP-fucose protein O-fucosyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.7   0.0   1.7e-10     1e-06       8     310 ..      30     308 ..      24     320 .. 0.64

  Alignments for each domain:
  == domain 1  score: 28.7 bits;  conditional E-value: 1.7e-10
      O-FucT   8 eGgfNnqrdvilrmvavarllnaTLVlPpw.....dqlshwrdss..........kqnrlpFsdfFdiesLkkdvrviemeeflkelppelwsaekr.. 89 
                 +G +N q  ++  ++  a +l++TL lP+       + + w++++          + n +p +++Fd+e L+  v+v      ++   ++  +a +r  
  KOO23199.1  30 MG-LNHQMASLSCALGEAFYLQRTLLLPRRiclfaLHEQRWKQTKksvegrtlaeSLNCVPADTLFDVERLNLLVPVE-----VR-GNSTRREALRRga 121
                 78.999999999999999999999999998788875567777766678888888777889999999999999999887.....33.2211222212232 PP

      O-FucT  90 ....ksvckeakpsyylkeilpllkkkkvvqlakf...........qklrCrskqgnpfglwdnfevsfe..........aelvlhdefgeeWkarvda 163
                     +    +++++          k+ +++  ++               +C+++q + + l  ++++              +++l          r   
  KOO23199.1 122 alvgQG---WSSERV---------KQAHACGAEGPalvrrrvdsefWFQKCTRRQTDYSTLAGALNQ--LvgapptapkpVNILL----------R-SG 195
                 222211...222222.........2222222222233333334455666788778888877777742..1345555554333333..........4.48 PP

      O-FucT 164 LrFskeieelaaklvkrllekrkakggpylalHLRrekDflaaCehgggeeellaspresrreegkltpeecvpsleeialqlkgllkelkltsvfvAt 262
                 L F+++i+++a+ +++++       gg y ++H Rr  D l aC+  + ++                  e + p++ e al+l   ++     +v+v +
  KOO23199.1 196 LFFAPSIKQAASAIRAQM-------GGTYASVHVRRS-DKLTACDPSDCKK----------------RDEATRPDAIERALRLWLPMN----AHVYVGS 266
                 ******************.......9***********.*******975544................344544555555555544444....49***** PP

      O-FucT 263 deiyggeelkelkkefpnlvkvtkeklaskeelekfkdgsva.aiDqii 310
                  e ++ + +++l++ f    + +++ ++    l+++ +++   a+++++
  KOO23199.1 267 TEPPS-F-FEPLRRSFRL-HFAEDFGPL----LTNITNNYALyAVETLV 308
                 *9997.7.********44.455555553....44444444444665555 PP

>> PKcGMP_CC  Coiled-coil N-terminus of cGMP-dependent protein kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   1.4   8.1e-06     0.048       7      31 ..     426     450 ..     423     451 .. 0.96

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 8.1e-06
   PKcGMP_CC   7 DERIRELEkrlaekdeEIqELrskL 31 
                 +ER++EL++ l+ k+e  +E r+kL
  KOO23199.1 426 EERVAELQAELQMKEEALKEARAKL 450
                 8**********************99 PP

>> She9_MDM33  She9 / Mdm33 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.5   3.6e-05      0.22      20      69 ..     410     459 ..     406     462 .. 0.93

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 3.6e-05
  She9_MDM33  20 skalndvtGYseieklkksieeleeeleeakeevreakeayeeaiekrsk 69 
                   +l + +GY++  +  ++++el++el+ + e+++ea+++ ++a+++r++
  KOO23199.1 410 EAKLAKAAGYNKAAAAEERVAELQAELQMKEEALKEARAKLAAAMAARQD 459
                 568999***************************************99976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (466 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       866  (0.0483016); expected 358.6 (0.02)
Passed bias filter:                      576  (0.0321267); expected 358.6 (0.02)
Passed Vit filter:                        72  (0.00401584); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.56u 0.27s 00:00:00.83 Elapsed: 00:00:00.41
# Mc/sec: 3425.08
//
Query:       KOO23200.1  [L=198]
Description: hypothetical protein Ctob_002885 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (198 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       297  (0.0165653); expected 358.6 (0.02)
Passed bias filter:                      226  (0.0126053); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.27s 00:00:00.62 Elapsed: 00:00:00.40
# Mc/sec: 1500.77
//
Query:       KOO23201.1  [L=330]
Description: hypothetical protein Ctob_002887 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.026   14.3   0.0      0.042   13.7   0.0    1.3  1  RRM_1     RNA recognition motif. (a.k.a. RRM, RBD, or RNP dom
      0.089   12.4   0.0       0.14   11.7   0.0    1.3  1  RRM_5     RNA recognition motif. (a.k.a. RRM, RBD, or RNP dom


Domain annotation for each model (and alignments):
>> RRM_1  RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.0   4.7e-06     0.042      33      65 ..      43      76 ..      30      81 .. 0.82

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 4.7e-06
                E.TTTSEEEEEEEEESSHHHHHHHHHHHTTEEET CS
       RRM_1 33 d.etgkskgfafVeFeskedAekAlealngkklg 65
                + +t+   gfa V+ +s+e+ e+Al+++ng  ++
  KOO23201.1 43 NsQTRERIGFALVQLASEEAVEAALAHFNGSPID 76
                26788899**********************9887 PP

>> RRM_5  RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   1.6e-05      0.14      64      89 ..      50      75 ..      45      97 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 1.6e-05
       RRM_5 64 ketalvqmgdasaveravqHLnnakl 89
                 + alvq++++ ave a+ H+n+ ++
  KOO23201.1 50 IGFALVQLASEEAVEAALAHFNGSPI 75
                578********************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (330 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       395  (0.0220313); expected 358.6 (0.02)
Passed bias filter:                      345  (0.0192426); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.44u 0.23s 00:00:00.67 Elapsed: 00:00:00.39
# Mc/sec: 2522.68
//
Query:       KOO23202.1  [L=306]
Description: hypothetical protein Ctob_002888 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    4.4e-23   82.7   0.0    6.6e-23   82.1   0.0    1.3  1  PhyH          Phytanoyl-CoA dioxygenase (PhyH)
  ------ inclusion threshold ------
      0.039   13.8   0.7       0.11   12.4   0.1    2.1  2  Tnp_DNA_bind  Transposase DNA-binding


Domain annotation for each model (and alignments):
>> PhyH  Phytanoyl-CoA dioxygenase (PhyH)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   82.1   0.0   7.3e-27   6.6e-23       1     210 [.      58     281 ..      58     282 .. 0.82

  Alignments for each domain:
  == domain 1  score: 82.1 bits;  conditional E-value: 7.3e-27
                 HHHHSEEEETTSS-HHHHHHHHHHHHHH.................HHHCHTTCCSEEEEECEEESTTCCCEECCCHHCHHHHTTHHHHHHHHHHHHTSC CS
        PhyH   1 feedGylviegflsaeevealraeieal.................ldralesgdkidfffeekaaadedglleksinkvghflhprkvadlvrailgqd 82 
                 +e +G ++i++flsa+ev++l+a+++al                 ++ + +sg k ++    +a ++ +++  +s  + +   h  ++ +l+ +++g +
  KOO23202.1  58 YELHGWVHIRSFLSATEVDELQAAADALertasslemsasvdgvyCEVQSASGRKGEAAVYPGALRKLTRPSSSSQAFASLRSHT-RLLALLTSVCGLT 155
                 7889************************777777777777777775555555555555555555555566665666666666666.8888888888877 PP

                 EEEEEEEEEEEEEEEE-TTTCB-EEEEE-SGGGST..EES...GCCEEEEEEESS-B-TTBT-EEEETTGGGS-CCGTCCHHCSGCCTTSCCCTTTGHG CS
        PhyH  83 vyvaavlqsmyqdifkqpkiGgevqpwHqDstflp..tdp...eesvvgvwialedateenGclrfiPGSHkweegplrrrlpeddteaeddeakkede 176
                 +   +++ + +   +k++k+G++  pwHqD+ fl   ++    +    +v++al++ +  nG+  ++ G+H  +   +  + ++d + a ddea  +++
  KOO23202.1 156 AP--RCVTDQL--SCKPAKVGTGF-PWHQDAGFLVgdARRsllRHGGANVALALDPSNGSNGGFEVLGGTHALGSV-KDLKGRYDTGGADDDEALFDQS 248
                 75..5788888..***********.*********966333577777788************************777.7999999**999999**99999 PP

                 SCEEEE.BTTTEEEEEETTSEEEE-TB.SSSXEE CS
        PhyH 177 eeavpvevkaGdavlfhgrllHgsgaNrsdksRr 210
                 +++ p  + + da++fh+ l+Hgs+aNrs + Rr
  KOO23202.1 249 QRTCPKLL-PSDALIFHPLLAHGSAANRSGRRRR 281
                 99999977.88********************998 PP

>> Tnp_DNA_bind  Transposase DNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.1   1.2e-05      0.11      17      52 ..      22      60 ..      19      62 .. 0.81
   2 ?   -3.4   0.1         1   9.3e+03      16      27 ..     139     150 ..     138     152 .. 0.82

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 1.2e-05
  Tnp_DNA_bind 17 ltkRlvklaeslaekpgasiPqacq...dwaetkAaYrF 52
                  l+ R++++a+ l+++p +si ++c    + a+++A+Y++
    KOO23202.1 22 LDPRFCAIANPLSSDPLSSIQASCFsadEEAAARAYYEL 60
                  678******************999622256777888875 PP

  == domain 2  score: -3.4 bits;  conditional E-value: 1
  Tnp_DNA_bind  16 RltkRlvklaes 27 
                   R ++Rl +l++s
    KOO23202.1 139 RSHTRLLALLTS 150
                   778999999986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (306 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       371  (0.0206927); expected 358.6 (0.02)
Passed bias filter:                      327  (0.0182386); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.41u 0.23s 00:00:00.64 Elapsed: 00:00:00.36
# Mc/sec: 2518.59
//
Query:       KOO23203.1  [L=168]
Description: ferredoxin 1-like protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.1e-27   96.8  13.3    1.1e-27   96.8  13.3    1.5  2  EMC3_TMCO1  Integral membrane protein EMC3/TMCO1-like


Domain annotation for each model (and alignments):
>> EMC3_TMCO1  Integral membrane protein EMC3/TMCO1-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   96.8  13.3   6.1e-32   1.1e-27      82     166 ..       5      90 ..       1      94 [. 0.94
   2 ?   -2.5   0.1      0.21   3.7e+03      79      87 ..      99     107 ..      91     127 .. 0.68

  Alignments for each domain:
  == domain 1  score: 96.8 bits;  conditional E-value: 6.1e-32
  EMC3_TMCO1  82 edqsemmmdqmkpmivtmipqiliffwlnsffsgfvvaklpfpltgrfksllqrgl..esldvrfvssiswYflcsfglsqiirklL 166
                 +d  +mmm++m + +++m+pq+++++ +n+ffsgfv+ k+pfplt  fk++lqrg+  ++ld ++v+s+swYfl++fg+++++++ +
  KOO23203.1   5 QD-PNMMMNMMQGSMAMMVPQMAMMGIVNYFFSGFVLGKIPFPLTPSFKGMLQRGIslTTLDTSYVTSMSWYFLVMFGMRGLYSITM 90 
                 44.68******************************************************************************9876 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 0.21
  EMC3_TMCO1  79 elmedqsem 87 
                  +m++q++m
  KOO23203.1  99 AMMQAQMGM 107
                 566666666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (168 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       607  (0.0338558); expected 358.6 (0.02)
Passed bias filter:                      345  (0.0192426); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.24s 00:00:00.60 Elapsed: 00:00:00.37
# Mc/sec: 1355.58
//
Query:       KOO23204.1  [L=531]
Description: DNA j-like protein 2 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (531 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       731  (0.0407719); expected 358.6 (0.02)
Passed bias filter:                      415  (0.0231469); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.55u 0.23s 00:00:00.78 Elapsed: 00:00:00.39
# Mc/sec: 4059.01
//
Query:       KOO23205.1  [L=233]
Description: calcium binding hemolysin, partial [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.6e-16   60.8   0.1    2.2e-16   60.4   0.1    1.2  1  Laminin_G_3  Concanavalin A-like lectin/glucanases superfamil
  ------ inclusion threshold ------
      0.014   15.2   0.1      0.026   14.3   0.1    1.3  1  Tymo_coat    Tymovirus coat protein


Domain annotation for each model (and alignments):
>> Laminin_G_3  Concanavalin A-like lectin/glucanases superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.4   0.1   2.4e-20   2.2e-16      61     151 ..       6     104 ..       1     105 [. 0.88

  Alignments for each domain:
  == domain 1  score: 60.4 bits;  conditional E-value: 2.4e-20
  Laminin_G_3  61 vnagngaeesvtsgasvpageWtHvavtyd....ggt...lrlYvNGvevgsatltggllsatsgplviGrdpgg.ddpfdGlidevriynralsaae 150
                  ++++ ++ ++++s+ s+pa++WtHvav+ +    ++t   +++Y NG+ v++++ +  +l+ + ++l++G++++g d+ f G++ ++ +++ als+a+
   KOO23205.1   6 THGSSSSFFYASSAPSFPANVWTHVAVVQSrasiADTygpAQIYWNGASVATSASMRFPLPVSRSNLYVGKSHWGsDPMFMGQMKDLLVWDVALSPAQ 103
                  344456778999******************9877444678*************999999999***********876999*****************98 PP

  Laminin_G_3 151 I 151
                   
   KOO23205.1 104 L 104
                  5 PP

>> Tymo_coat  Tymovirus coat protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   0.1   2.9e-06     0.026      75     132 ..      18      76 ..      11      83 .. 0.80

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 2.9e-06
                 TS-EEEEEEEEETT--GG..GGGGBSS-EEEEE.SSTTTTTS-EEEE--TTTS--EEE- CS
   Tymo_coat  75 tyPitvdvvWtpasvtPadskitkvyGgqriav.gGavnlsspllvpaeLeslnPtikd 132
                 + P     vWt  +v   ++ i ++yG  +i   g +v +s+++  p ++++ n  + +
  KOO23205.1  18 SAPSFPANVWTHVAVVQSRASIADTYGPAQIYWnGASVATSASMRFPLPVSRSNLYVGK 76 
                 445555568*****99999********8777651568**********999999977755 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (233 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       214  (0.011936); expected 358.6 (0.02)
Passed bias filter:                      167  (0.00931452); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.39u 0.23s 00:00:00.62 Elapsed: 00:00:00.38
# Mc/sec: 1824.36
//
Query:       KOO23206.1  [L=414]
Description: hypothetical protein Ctob_001603 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
       0.16   12.1   3.5       0.23   11.6   0.4    2.7  2  zf-piccolo  Piccolo Zn-finger


Domain annotation for each model (and alignments):
>> zf-piccolo  Piccolo Zn-finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.4   1.3e-05      0.23      24      39 ..       5      20 ..       1      26 [. 0.82
   2 ?   -0.2   0.2     0.064   1.1e+03      35      38 ..     388     391 ..     361     412 .. 0.53

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 1.3e-05
  zf-piccolo 24 teCkkqvCnlCGFnpt 39
                t+  + vC+lCGF+p 
  KOO23206.1  5 TSSSTRVCSLCGFSPI 20
                677899********95 PP

  == domain 2  score: -0.2 bits;  conditional E-value: 0.064
  zf-piccolo  35 GFnp 38 
                 G +p
  KOO23206.1 388 GMSP 391
                 5555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (414 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       502  (0.0279993); expected 358.6 (0.02)
Passed bias filter:                      346  (0.0192983); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.50u 0.23s 00:00:00.73 Elapsed: 00:00:00.40
# Mc/sec: 3130.92
//
Query:       KOO23207.1  [L=343]
Description: hypothetical protein Ctob_001602 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.3e-09   37.0   0.4    4.3e-05   23.3   0.1    2.9  3  EF-hand_8  EF-hand domain pair
    5.4e-09   36.4   0.7    1.5e-08   34.9   0.7    1.8  1  EF-hand_7  EF-hand domain pair
    2.1e-08   33.1   1.0     0.0058   16.1   0.1    2.9  2  EF-hand_1  EF hand
    1.1e-06   27.9   1.0     0.0092   15.4   0.1    2.7  2  EF-hand_5  EF hand
    2.1e-06   27.2   0.5     0.0031   17.3   0.1    2.8  2  EF-hand_6  EF-hand domain
  ------ inclusion threshold ------
       0.12   12.3   0.0       0.23   11.4   0.0    1.4  1  DUF1007    Protein of unknown function (DUF1007)


Domain annotation for each model (and alignments):
>> EF-hand_8  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.0      0.64   1.9e+03       9      34 ..      96     125 ..      91     126 .. 0.68
   2 !   10.3   0.0   0.00016      0.49      27      54 ..     264     291 ..     253     291 .. 0.89
   3 !   23.3   0.1   1.5e-08   4.3e-05      10      49 ..     300     335 ..     299     337 .. 0.91

  Alignments for each domain:
  == domain 1  score: -1.2 bits;  conditional E-value: 0.64
   EF-hand_8   9 elrril.rilglkk.....glseeevdilfre 34 
                 ++rr++  ++g  +      ++  e+d+l+++
  KOO23207.1  96 TFRRAIcYAMG--DqwtrlAMTSAEFDALVKK 125
                 67777776665..3446666899999999886 PP

  == domain 2  score: 10.3 bits;  conditional E-value: 0.00016
   EF-hand_8  27 evdilfrefDtdgdGkisfeEFcvller 54 
                  v++ ++ +D  gdG++s eE   +l++
  KOO23207.1 264 TVRAALKDIDDSGDGVLSREEIKKMLQD 291
                 68899999****************9985 PP

  == domain 3  score: 23.3 bits;  conditional E-value: 1.5e-08
   EF-hand_8  10 lrrilrilglkk.glseeevdilfrefDtdgdGkisfeEFc 49 
                 +++     gl++ +l  + v++l++e+D  gdG+i+++EF 
  KOO23207.1 300 FYT-----GLQRgDLDVKVVETLLDEVDSSGDGIINYDEFS 335
                 667.....888889**************************6 PP

>> EF-hand_7  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.9   0.7   5.1e-12   1.5e-08       6      68 ..     267     336 ..     262     339 .. 0.90

  Alignments for each domain:
  == domain 1  score: 34.9 bits;  conditional E-value: 5.1e-12
   EF-hand_7   6 eaFkelDtdgdgyldkeellrllrkifqga........gegsklsdeelellfkefDtdkdGvisfdEFlk 68 
                  a k +D  gdg l++ee++++l+ ++ ++         +g+  + + +e+l++e+D+++dG i++dEF +
  KOO23207.1 267 AALKDIDDSGDGVLSREEIKKMLQDFNLMKyfafytglQRGDL-DVKVVETLLDEVDSSGDGIINYDEFSA 336
                 567899*********************999*******666655.9999*********************75 PP

>> EF-hand_1  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.1   1.9e-06    0.0058       2      28 ..     265     291 ..     264     292 .. 0.92
   2 !   14.9   0.1   4.6e-06     0.014       4      24 ..     316     336 ..     313     341 .. 0.84

  Alignments for each domain:
  == domain 1  score: 16.1 bits;  conditional E-value: 1.9e-06
                 HHHHHHHHTTTSSSEEEHHHHHHHHHH CS
   EF-hand_1   2 lkeiFrefDkDgdGkIdfeEfkellkk 28 
                 ++ + +++D  gdG +++eE k++l++
  KOO23207.1 265 VRAALKDIDDSGDGVLSREEIKKMLQD 291
                 68899*******************985 PP

  == domain 2  score: 14.9 bits;  conditional E-value: 4.6e-06
                 HHHHHHTTTSSSEEEHHHHHH CS
   EF-hand_1   4 eiFrefDkDgdGkIdfeEfke 24 
                  + +e+D  gdG I+++Ef +
  KOO23207.1 316 TLLDEVDSSGDGIINYDEFSA 336
                 56799**************76 PP

>> EF-hand_5  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.1   3.1e-06    0.0092       2      24 ..     266     288 ..     265     289 .. 0.88
   2 !   10.5   0.1   0.00011      0.34       4      23 ..     317     336 ..     314     339 .. 0.85

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 3.1e-06
                 HHHHHHH-SS-SSCE-HHHHHHH CS
   EF-hand_5   2 kdtFqaiDlNgDGkIskeELktl 24 
                 +++++ iD  gDG +s+eE k++
  KOO23207.1 266 RAALKDIDDSGDGVLSREEIKKM 288
                 567899**************997 PP

  == domain 2  score: 10.5 bits;  conditional E-value: 0.00011
                 HHHHH-SS-SSCE-HHHHHH CS
   EF-hand_5   4 tFqaiDlNgDGkIskeELkt 23 
                 +++++D  gDG I+ +E+ +
  KOO23207.1 317 LLDEVDSSGDGIINYDEFSA 336
                 67899*************76 PP

>> EF-hand_6  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   0.1     1e-06    0.0031       2      28 ..     265     291 ..     264     299 .. 0.89
   2 !    7.2   0.0    0.0018       5.3       7      24 ..     319     336 ..     314     342 .. 0.79

  Alignments for each domain:
  == domain 1  score: 17.3 bits;  conditional E-value: 1e-06
   EF-hand_6   2 lreaFklfDkdgdGkidaeElrkalrk 28 
                 +r+a k +D +gdG +++eE++k+l++
  KOO23207.1 265 VRAALKDIDDSGDGVLSREEIKKMLQD 291
                 5788999******************94 PP

  == domain 2  score: 7.2 bits;  conditional E-value: 0.0018
   EF-hand_6   7 klfDkdgdGkidaeElrk 24 
                 ++ D +gdG i+++E+ +
  KOO23207.1 319 DEVDSSGDGIINYDEFSA 336
                 678*************54 PP

>> DUF1007  Protein of unknown function (DUF1007)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   7.8e-05      0.23      51      99 ..     267     314 ..     263     332 .. 0.89

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 7.8e-05
     DUF1007  51 fllqgldknkdgvldeeelaelakenvenlkeyeYFtelkaggkklkfa 99 
                 ++l+++d+++dgvl++ee++++ + +++ +k ++++t l++g+ ++k+ 
  KOO23207.1 267 AALKDIDDSGDGVLSREEIKKMLQ-DFNLMKYFAFYTGLQRGDLDVKVV 314
                 6899*****************997.5899************99888875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (343 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       405  (0.0225891); expected 358.6 (0.02)
Passed bias filter:                      334  (0.018629); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.45u 0.26s 00:00:00.71 Elapsed: 00:00:00.41
# Mc/sec: 2540.66
//
Query:       KOO23208.1  [L=447]
Description: amino acid permease-associated region [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    6.9e-31  107.5  21.7    8.5e-31  107.2  21.7    1.0  1  AA_permease_2  Amino acid permease
      1e-16   60.6  18.4    1.5e-16   60.0  18.4    1.2  1  AA_permease    Amino acid permease


Domain annotation for each model (and alignments):
>> AA_permease_2  Amino acid permease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  107.2  21.7   9.4e-35   8.5e-31      42     420 ..       2     402 ..       1     407 [. 0.78

  Alignments for each domain:
  == domain 1  score: 107.2 bits;  conditional E-value: 9.4e-35
  AA_permease_2  42 igslavllvyaElssalprsgGiyvytkaaf.....gkkvaflsawfnwfayvpvlasilsvaasyllnalgpdlqgntwltyliaiaililvali 132
                    + +++ +++  El+s++p sgG yvy+++ +     g + af++ w +w++  + +as+++++ syl ++ g    ++ w+  l a+++ il++++
     KOO23208.1   2 LACFCDSFIWGELGSRFPLSGGTYVYLRECYgkgswGDLGAFIFLWQSWISGPAQVASGFIAISSYLTYVHGR---DDYWTKALTAFGLNILTIIM 94 
                    4458999******999***********99975544478888****************************8775...47899999999999999999 PP

  AA_permease_2 133 nirgikesakiqnilgilkillpliiliilglitvdgggfsslstetdtffpngwpgvllglli....vlwsfdGfesaanvseevkk..kdvpka 222
                      r + e++ +  +l  ++i   ++  +++gl+ ++g  f+        f ++g  +++++l++     ++ ++G++ ++ +  ev++  +++p  
     KOO23208.1  95 LMRRPGETGSVVYVLWGITIA-SILYCLVAGLANFHGENFHL---PPQPFGNDGALSFVVSLGAacrfGIYDLTGYYDVCTMGGEVRNprRTIPGS 186
                    99******9999888888885.55555557777776665552...122344445555788888877778****************8888579**** PP

  AA_permease_2 223 ifigllivlvlyllvniaflgvvpddei........anlsnlgsvaalffeavggkvvaiivvilialsllgaintavigssrvlealardgvlPr 310
                    ++i + + l++y+l+ +a++g +p+d+         + ++++ +++a f e++ g+ +a++ +i+++++++g++++ ++g++++  a+a+ g + +
     KOO23208.1 187 CIITCTLLLFVYMLTYVAIIGYLPWDGEdgfvtrmtDGNESTAYIMADFSEKLVGRGFAVFTAIVVCVVIFGSVFSMMAGMMYLPGAAAESGLFIE 282
                    ***************************999999997555667788999999999*****************************************7 PP

  AA_permease_2 311 ffakvnk....fgspiraiiltaivslillllfllassaaynfllsvsslgliisyllliigalilrkk..rphl...krpgk.......ilvaii 390
                     f + +        p+ ++     +s+++++l+l       +++ +++++++++ ++  +ig++ilr++  + +l   kr ++       +++ ++
     KOO23208.1 283 AFGRRSTlgcsEDVPMLSLLALGALSSVFCFLSLE------TVVGAMTVMLVLVQFMGQAIGLIILRYRisKGELpedKRVWRirylpivVVPHLL 372
                    77777651222666999999999999888766643......899999999999999999********99642233444665553554432333333 PP

  AA_permease_2 391 galfllfllvalffppkgpatqssliytii 420
                    ++ f++++  +  f +k+p    sl+y ++
     KOO23208.1 373 IFSFIFVTTDNYVFSGKTPMLEMSLAYILF 402
                    344444444444466666666666555554 PP

>> AA_permease  Amino acid permease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.0  18.4   1.7e-20   1.5e-16      48     434 ..      10     386 ..       2     416 .. 0.73

  Alignments for each domain:
  == domain 1  score: 60.0 bits;  conditional E-value: 1.7e-20
  AA_permease  48 slgeiatngpksggfytyasrflgp.elGfviGln....ylfswitvlaleltaasiliqfwelvtdlpkawvtgavflvvlliinlvgvkvygeaef 140
                  + ge+ + +p sgg+y+y +++ g+ ++G   +++     ++s+ +++a +++a+s++++++   +d++++  t+   +++ ++  ++ ++  ge+  
   KOO23208.1  10 IWGELGSRFPLSGGTYVYLRECYGKgSWGDLGAFIflwqSWISGPAQVASGFIAISSYLTYVHGRDDYWTKALTA---FGLNILTIIMLMRRPGETGS 104
                  679**********************99999999884333444455566666777777777776666666333332...344444445689******** PP

  AA_permease 141 ilalikiiaiiafiivgiillaggkpnkgagfrflgdngsifknnlppgfakeeegafknfis...vfvivvfaftGielvaiiagEvkdPeksiPka 235
                  ++ ++++i+i++ + +++ +la+ +++++      + +     + ++++      ga++ ++s   +  + + ++tG+  v++++gEv++P+++iP +
   KOO23208.1 105 VVYVLWGITIASILYCLVAGLANFHGENF------HLPP----QPFGND------GALSFVVSlgaACRFGIYDLTGYYDVCTMGGEVRNPRRTIPGS 186
                  *************************9999......3333....366777......444444440004556667789********************** PP

  AA_permease 236 ilqvviritifYvlsllligllvprnd.lgllndsasa....aspfvifikesgvsvlaplinaviltaalssansslysasRvlyslakdglaP.kv 327
                   + +  +++++Y l  ++i+  +p++  +g+++   ++    a ++  f +++  +++a++ ++v+ + +++s+ s+++ +  +  + a++gl+  ++
   KOO23208.1 187 CIITCTLLLFVYMLTYVAIIGYLPWDGeDGFVTRMTDGnestAYIMADFSEKLVGRGFAVFTAIVVCVVIFGSVFSMMAGMMYLPGAAAESGLFIeAF 284
                  *************************9614566655556998888999999999***************************99999*********9655 PP

  AA_permease 328 lkkvs...krgvPlraills.miisllalllaslnlaapivfnfllaisaliglivwlliilsylrfRkalkyqgrsieelgfkaallplgvilvlaa 421
                  +++++    + vP+ ++l+  ++ s++++l  +  ++         a++ +  l+ ++  ++ ++ +R  +++ +   ++   ++++lp  v+  l++
   KOO23208.1 285 GRRSTlgcSEDVPMLSLLALgALSSVFCFLSLETVVG---------AMTVMLVLVQFMGQAIGLIILRYRISKGELPEDKRVWRIRYLPIVVVPHLLI 373
                  5555444467899999876515556777777777777.........5555555555555555555555555555555555566777777777777777 PP

  AA_permease 422 liiillilalyay 434
                  +++i+++++ y +
   KOO23208.1 374 FSFIFVTTDNYVF 386
                  7777777766654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (447 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       629  (0.0350828); expected 358.6 (0.02)
Passed bias filter:                      263  (0.014669); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.45u 0.26s 00:00:00.71 Elapsed: 00:00:00.38
# Mc/sec: 3490.00
//
Query:       KOO23209.1  [L=1129]
Description: hypothetical protein Ctob_001600 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    4.6e-11   42.9   0.0    5.6e-06   26.2   0.0    2.1  2  Phosphodiest  Type I phosphodiesterase / nucleotide pyrophosp
     0.0023   17.4   0.0     0.0046   16.4   0.0    1.6  1  Sulfatase     Sulfatase


Domain annotation for each model (and alignments):
>> Phosphodiest  Type I phosphodiesterase / nucleotide pyrophosphatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.2   0.0   6.2e-10   5.6e-06       1     100 [.     277     377 ..     277     442 .. 0.82
   2 !   14.6   0.0   2.1e-06     0.019     176     237 ..     539     600 ..     507     617 .. 0.82

  Alignments for each domain:
  == domain 1  score: 26.2 bits;  conditional E-value: 6.2e-10
                   EEEEEETT-BTTHHHHHGSTSHHHHHHHH......HSEEESEEE-SSS-SHHHHHHHHHHSS-HHHHS--SSSEEETTTTEEEEEETTTTGG.GGGC CS
  Phosphodiest   1 vlvislDGlradlldrlaellpnlaaLak......egvsapnlrpvfPtlTfpnhaslvTGlyPgeHGivgNtfydrktgeyvvfvtededa.prww 90 
                   v+++++ Glr d l +     p l+ L++       ++  p l++  P+++ + + +l+TG++ + +G++g++ + ++t  + vf++++ +  + + 
    KOO23209.1 277 VVLLVVSGLRLDALHA----VPALRTLFSspelarDSLVLP-LTAGPPSTSTAQWLALATGASAALTGVYGDHRL-PETPFDSVFRQARLHGlSSFA 367
                   79************98....777777777777776999999.*****************************9988.777777788888665556666 PP

                   TTS-HHHHHH CS
  Phosphodiest  91 qgepiwdtaa 100
                   +g+p++ ++ 
    KOO23209.1 368 TGSPWFTELF 377
                   6666555554 PP

  == domain 2  score: 14.6 bits;  conditional E-value: 2.1e-06
                   EEEEECCCHHHHHHH-..TT.SHH..HHHHHHHHHHHHHHHHHHHHHTTGTTTEEEEEEES---EEE CS
  Phosphodiest 176 llvyleetDtvgHkfG..pd.spe..vedalrrvDkaigdLlealderglsaetniilvSDHGmadv 237
                   l+  l++ D + H  G  p  +p      al+++ k+ig Ll++ld +     t++++vSDHG  d 
    KOO23209.1 539 LTAQLSQADVQAHCSGaaPGlDPRgaYVHALEEAAKHIGSLLRELDAT-----TTLLIVSDHGSVDA 600
                   56666666666666664433444444667999***************9.....**********8765 PP

>> Sulfatase  Sulfatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   0.0   5.2e-07    0.0046     208     288 ..     548     629 ..     414     677 .. 0.76

  Alignments for each domain:
  == domain 1  score: 16.4 bits;  conditional E-value: 5.2e-07
                 H...........HHHHHHHHHHHHHHHHHHHHHHHHHHTTTGGGEEEEEEESSSSCCCGHHTTSSSCTTCSSSHHHHBEEEEEEETTTSHC...E CS
   Sulfatase 208 r...........qlleaylnsveyvDdligrvlaaLeenglldntlvvftSDhgasleesngplrggkganayeggtrvPllvwwpgekap...r 288
                               ++ay +++e++ ++ig++l +L     +  t+++++SDhg  ++       gg g  a +  t+vPl+ + pg       +
  KOO23209.1 548 VqahcsgaapglDPRGAYVHALEEAAKHIGSLLREL-----DATTTLLIVSDHGS-VDA------GGSG-GAEPLATQVPLVAYRPGSMLGalgA 629
                 0445555555667899********************.....99***********9.533......4444.677889*********9986655552 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1129 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       533  (0.0297284); expected 358.6 (0.02)
Passed bias filter:                      285  (0.015896); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.74u 0.28s 00:00:01.02 Elapsed: 00:00:00.45
# Mc/sec: 7484.90
//
Query:       KOO23210.1  [L=658]
Description: hypothetical protein Ctob_001607, partial [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.9e-22   77.1   1.0    2.3e-05   23.6   0.0    6.2  6  EF-hand_1        EF hand
      5e-22   78.1   4.3      2e-07   31.3   0.0    4.2  4  EF-hand_7        EF-hand domain pair
    5.1e-22   75.9   9.5      2e-05   24.2   0.1    6.7  7  EF-hand_6        EF-hand domain
    6.2e-16   57.1   6.7     0.0013   18.1   0.0    6.3  6  EF-hand_5        EF hand
    9.4e-08   31.8   0.0       0.38   10.6   0.0    4.9  4  EF-hand_8        EF-hand domain pair
    0.00039   20.7   0.0       0.96    9.8   0.0    3.4  3  SPARC_Ca_bdg     Secreted protein acidic and rich in cysteine
  ------ inclusion threshold ------
      0.031   14.1   1.0         20    5.1   0.1    3.5  3  EF-hand_10       EF hand
       0.11   12.4   0.1         62    3.5   0.0    4.2  6  Caleosin         Caleosin related protein
       0.12   13.0   0.2         11    6.7   0.0    3.1  2  CysA_C_terminal  CysA C-terminal regulatory domain
       0.49   11.4   5.7        2.6    9.1   0.4    3.5  3  DUF1018          Protein of unknown function (DUF1018)


Domain annotation for each model (and alignments):
>> EF-hand_1  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.6   0.0   1.3e-08   2.3e-05       5      29 .]      19      43 ..      15      43 .. 0.92
   2 ?   -3.9   0.0       8.2   1.5e+04      17      26 ..      68      77 ..      68      78 .. 0.79
   3 !   20.3   0.1   1.4e-07   0.00025       2      28 ..     447     473 ..     446     474 .. 0.94
   4 ?    2.0   0.0       0.1   1.8e+02      14      27 ..     495     508 ..     494     510 .. 0.87
   5 !   14.5   0.0     1e-05     0.019       2      28 ..     598     624 ..     597     625 .. 0.90
   6 !    9.2   0.0   0.00051      0.91       6      25 ..     637     656 ..     635     658 .] 0.82

  Alignments for each domain:
  == domain 1  score: 23.6 bits;  conditional E-value: 1.3e-08
                HHHHHTTTSSSEEEHHHHHHHHHHH CS
   EF-hand_1  5 iFrefDkDgdGkIdfeEfkellkkl 29
                 F+ fDkD++G++d+ E+k++lk+l
  KOO23210.1 19 TFATFDKDNSGTLDKTELKAALKHL 43
                69********************986 PP

  == domain 2  score: -3.9 bits;  conditional E-value: 8.2
                EEHHHHHHHH CS
   EF-hand_1 17 IdfeEfkell 26
                +d++Ef +++
  KOO23210.1 68 LDINEFNAMV 77
                6899998875 PP

  == domain 3  score: 20.3 bits;  conditional E-value: 1.4e-07
                 HHHHHHHHTTTSSSEEEHHHHHHHHHH CS
   EF-hand_1   2 lkeiFrefDkDgdGkIdfeEfkellkk 28 
                 ++++F+ +D+D++G +d  E +e++k 
  KOO23210.1 447 VRDAFERYDRDRSGLLDEREIREAFKQ 473
                 689*********************997 PP

  == domain 4  score: 2.0 bits;  conditional E-value: 0.1
                 SSEEEHHHHHHHHH CS
   EF-hand_1  14 dGkIdfeEfkellk 27 
                 dGkId+ +f +++ 
  KOO23210.1 495 DGKIDIGQFNRMVI 508
                 9********99975 PP

  == domain 5  score: 14.5 bits;  conditional E-value: 1e-05
                 HHHHHHHHTTTSSSEEEHHHHHHHHHH CS
   EF-hand_1   2 lkeiFrefDkDgdGkIdfeEfkellkk 28 
                 ++++F  +D +gdG ++  E++  l+k
  KOO23210.1 598 VRKAFTSIDANGDGALTQAELLPGLRK 624
                 799******************988776 PP

  == domain 6  score: 9.2 bits;  conditional E-value: 0.00051
                 HHHHTTTSSSEEEHHHHHHH CS
   EF-hand_1   6 FrefDkDgdGkIdfeEfkel 25 
                 F  +  ++dGk+++ Ef +l
  KOO23210.1 637 FHTANSNNDGKLSLAEFEKL 656
                 566668***********886 PP

>> EF-hand_7  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.3   0.1     3e-07   0.00055       6      69 ..      18      76 ..      14      78 .. 0.85
   2 ?   -2.8   0.0         5   8.9e+03      41      54 ..     241     254 ..     214     257 .. 0.61
   3 !   24.1   1.3     2e-08   3.6e-05       5      69 ..     448     506 ..     445     568 .. 0.93
   4 !   31.3   0.0   1.1e-10     2e-07       4      71 .]     598     658 .]     595     658 .] 0.90

  Alignments for each domain:
  == domain 1  score: 20.3 bits;  conditional E-value: 3e-07
   EF-hand_7  6 eaFkelDtdgdgyldkeellrllrkifqgagegsklsdeelellfkefDtdk.dGvisfdEFlkl 69
                + F  +D+d++g ldk+el+ +l+      + g + +  e  ++++  D+   +  ++ +EF ++
  KOO23210.1 18 TTFATFDKDNSGTLDKTELKAALK------HLGMDYTTAEAIAILERYDSATtNKDLDINEFNAM 76
                569*****************9999......88888888999999999988774578999999876 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 5
   EF-hand_7  41 lsdeelellfkefD 54 
                 l+ ++l +l+k fD
  KOO23210.1 241 LPHKKLYELLKSFD 254
                 44466777777777 PP

  == domain 3  score: 24.1 bits;  conditional E-value: 2e-08
   EF-hand_7   5 keaFkelDtdgdgyldkeellrllrkifqgagegsklsdeelellfkefDtdkdGvisfdEFlkl 69 
                 ++aF+ +D+d++g ld++e++++++        + + s +e+++++ +     dG+i+   F ++
  KOO23210.1 448 RDAFERYDRDRSGLLDEREIREAFK------QLDLDASADEIKAVMSKYSDAADGKIDIGQFNRM 506
                 789**********************......5666667889****************98887765 PP

  == domain 4  score: 31.3 bits;  conditional E-value: 1.1e-10
   EF-hand_7   4 lkeaFkelDtdgdgyldkeellrllrkifqgagegsklsdeelellfkefDtdkdGvisfdEFlklyr 71 
                 ++ aF ++D +gdg l+++ell  lrk+      +s+++     + f+  ++++dG++s+ EF+klyr
  KOO23210.1 598 VRKAFTSIDANGDGALTQAELLPGLRKLG---VVASEFDV----KGFHTANSNNDGKLSLAEFEKLYR 658
                 6789****************888***877...77777777....88*******************997 PP

>> EF-hand_6  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.2   0.1   1.1e-08     2e-05       6      31 .]      20      44 ..      17      46 .. 0.92
   2 ?   -3.0   0.0       5.6     1e+04      17      25 ..      68      76 ..      64      79 .. 0.80
   3 ?   -3.8   0.0        10   1.8e+04      17      27 ..     161     171 ..     160     175 .. 0.81
   4 !   21.7   0.3     7e-08   0.00013       2      28 ..     447     473 ..     446     491 .. 0.91
   5 ?    2.6   0.0      0.09   1.6e+02       5      25 ..     486     506 ..     482     511 .. 0.75
   6 !   18.5   0.0   7.1e-07    0.0013       2      31 .]     598     626 ..     597     627 .. 0.93
   7 !    8.3   0.0    0.0013       2.4       6      27 ..     637     658 .]     634     658 .] 0.85

  Alignments for each domain:
  == domain 1  score: 24.2 bits;  conditional E-value: 1.1e-08
   EF-hand_6  6 FklfDkdgdGkidaeElrkalrkalg 31
                F  fDkd++G++d+ El++al+  lg
  KOO23210.1 20 FATFDKDNSGTLDKTELKAALK-HLG 44
                99********************.565 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 5.6
   EF-hand_6 17 idaeElrka 25
                +d++E+ ++
  KOO23210.1 68 LDINEFNAM 76
                8999*9886 PP

  == domain 3  score: -3.8 bits;  conditional E-value: 10
   EF-hand_6  17 idaeElrkalr 27 
                 +d+e ++++l+
  KOO23210.1 161 LDPETCVQMLK 171
                 78999999998 PP

  == domain 4  score: 21.7 bits;  conditional E-value: 7e-08
   EF-hand_6   2 lreaFklfDkdgdGkidaeElrkalrk 28 
                 +r+aF+ +D+d++G +d  E+r a+++
  KOO23210.1 447 VRDAFERYDRDRSGLLDEREIREAFKQ 473
                 589**********************96 PP

  == domain 5  score: 2.6 bits;  conditional E-value: 0.09
   EF-hand_6   5 aFklfDkdgdGkidaeElrka 25 
                 +  ++    dGkid+ ++ ++
  KOO23210.1 486 VMSKYSDAADGKIDIGQFNRM 506
                 556676668********9887 PP

  == domain 6  score: 18.5 bits;  conditional E-value: 7.1e-07
   EF-hand_6   2 lreaFklfDkdgdGkidaeElrkalrkalg 31 
                 +r+aF  +D +gdG ++++El   lr +lg
  KOO23210.1 598 VRKAFTSIDANGDGALTQAELLPGLR-KLG 626
                 699*******************9999.676 PP

  == domain 7  score: 8.3 bits;  conditional E-value: 0.0013
   EF-hand_6   6 FklfDkdgdGkidaeElrkalr 27 
                 F+    ++dGk++ +E+ k++r
  KOO23210.1 637 FHTANSNNDGKLSLAEFEKLYR 658
                 5556689***********9987 PP

>> EF-hand_5  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.1   0.0   7.5e-07    0.0013       4      23 ..      19      38 ..      16      41 .. 0.89
   2 !   10.7   0.2   0.00016      0.29       2      23 ..     448     469 ..     447     472 .. 0.88
   3 ?    2.5   0.1     0.062   1.1e+02       1      11 [.     467     477 ..     467     479 .. 0.84
   4 ?   -1.0   0.0      0.81   1.5e+03      13      18 ..     495     500 ..     494     506 .. 0.90
   5 !   14.2   0.0   1.3e-05     0.023       2      21 ..     599     618 ..     598     625 .. 0.89
   6 !   10.7   0.0   0.00017       0.3      11      24 ..     643     656 ..     640     657 .. 0.93

  Alignments for each domain:
  == domain 1  score: 18.1 bits;  conditional E-value: 7.5e-07
                HHHHH-SS-SSCE-HHHHHH CS
   EF-hand_5  4 tFqaiDlNgDGkIskeELkt 23
                tF  +D++++G+++k ELk+
  KOO23210.1 19 TFATFDKDNSGTLDKTELKA 38
                8*****************97 PP

  == domain 2  score: 10.7 bits;  conditional E-value: 0.00016
                 HHHHHHH-SS-SSCE-HHHHHH CS
   EF-hand_5   2 kdtFqaiDlNgDGkIskeELkt 23 
                 +d+F++ D +++G ++  E ++
  KOO23210.1 448 RDAFERYDRDRSGLLDEREIRE 469
                 789*************999887 PP

  == domain 3  score: 2.5 bits;  conditional E-value: 0.062
                 HHHHHHHH-SS CS
   EF-hand_5   1 lkdtFqaiDlN 11 
                 ++++F+++Dl+
  KOO23210.1 467 IREAFKQLDLD 477
                 5778******9 PP

  == domain 4  score: -1.0 bits;  conditional E-value: 0.81
                 SSCE-H CS
   EF-hand_5  13 DGkIsk 18 
                 DGkI++
  KOO23210.1 495 DGKIDI 500
                 9***96 PP

  == domain 5  score: 14.2 bits;  conditional E-value: 1.3e-05
                 HHHHHHH-SS-SSCE-HHHH CS
   EF-hand_5   2 kdtFqaiDlNgDGkIskeEL 21 
                 +++F  iD+NgDG ++  EL
  KOO23210.1 599 RKAFTSIDANGDGALTQAEL 618
                 57799***********9998 PP

  == domain 6  score: 10.7 bits;  conditional E-value: 0.00017
                 S-SSCE-HHHHHHH CS
   EF-hand_5  11 NgDGkIskeELktl 24 
                 N+DGk+s  E+++l
  KOO23210.1 643 NNDGKLSLAEFEKL 656
                 9**********997 PP

>> EF-hand_8  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.6   0.0   0.00021      0.38      28      54 ..      16      42 ..      11      43 .. 0.87
   2 ?    2.9   0.0     0.054        97      29      53 ..     448     472 ..     439     489 .. 0.84
   3 !    6.4   0.0    0.0044       7.8      32      51 ..     602     621 ..     597     625 .. 0.83
   4 !    5.3   0.0    0.0097        17      35      48 ..     640     653 ..     637     657 .. 0.85

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00021
   EF-hand_8 28 vdilfrefDtdgdGkisfeEFcvller 54
                v + f +fD d++G+++++E  + l++
  KOO23210.1 16 VSTTFATFDKDNSGTLDKTELKAALKH 42
                6666889***************99987 PP

  == domain 2  score: 2.9 bits;  conditional E-value: 0.054
   EF-hand_8  29 dilfrefDtdgdGkisfeEFcvlle 53 
                 ++ f + D+d++G ++  E  + ++
  KOO23210.1 448 RDAFERYDRDRSGLLDEREIREAFK 472
                 6667788999999999888776665 PP

  == domain 3  score: 6.4 bits;  conditional E-value: 0.0044
   EF-hand_8  32 frefDtdgdGkisfeEFcvl 51 
                 f  +D +gdG++++ E +  
  KOO23210.1 602 FTSIDANGDGALTQAELLPG 621
                 7789************8765 PP

  == domain 4  score: 5.3 bits;  conditional E-value: 0.0097
   EF-hand_8  35 fDtdgdGkisfeEF 48 
                 +  ++dGk+s+ EF
  KOO23210.1 640 ANSNNDGKLSLAEF 653
                 6789*********9 PP

>> SPARC_Ca_bdg  Secreted protein acidic and rich in cysteine Ca binding region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.2   0.0     0.015        26      51      81 ..      11      41 ..       2      75 .. 0.72
   2 ?    1.2   0.0      0.25   4.5e+02      59      83 ..     450     474 ..     437     504 .. 0.73
   3 !    9.8   0.0   0.00053      0.96      58     111 ..     600     654 ..     589     655 .. 0.81

  Alignments for each domain:
  == domain 1  score: 5.2 bits;  conditional E-value: 0.015
  SPARC_Ca_bdg 51 eckepvawkFsklDtnsdkvlsksELaplra 81
                   ++++v   F ++D+++ ++l+k+EL++  +
    KOO23210.1 11 GVSQTVSTTFATFDKDNSGTLDKTELKAALK 41
                  567788999*****************86544 PP

  == domain 2  score: 1.2 bits;  conditional E-value: 0.25
  SPARC_Ca_bdg  59 kFsklDtnsdkvlsksELaplrapl 83 
                    F++ D ++ ++l+++E+++  ++l
    KOO23210.1 450 AFERYDRDRSGLLDEREIREAFKQL 474
                   7999*************99865444 PP

  == domain 3  score: 9.8 bits;  conditional E-value: 0.00053
  SPARC_Ca_bdg  58 wkFsklDtnsdkvlsksELap.lra.plvklehCikpflescDadkdkkislkEwc 111
                     F+++D n d+ l+++EL p lr+  +v  e  +k f +++ +++d+k+sl+E+ 
    KOO23210.1 600 KAFTSIDANGDGALTQAELLPgLRKlGVVASEFDVKGF-HTANSNNDGKLSLAEFE 654
                   579***************98745541457777777775.8899***********95 PP

>> EF-hand_10  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.4   0.0     0.019        33      27      48 ..      20      41 ..      16      43 .. 0.84
   2 ?    5.1   0.1     0.011        20      27      50 .]     451     474 ..     447     474 .. 0.86
   3 ?    0.5   0.0      0.32   5.8e+02      27      48 ..     637     658 .]     628     658 .] 0.89

  Alignments for each domain:
  == domain 1  score: 4.4 bits;  conditional E-value: 0.019
  EF-hand_10 27 FkkcDkSksgrLegeEieeFyk 48
                F + Dk +sg+L+  E++  +k
  KOO23210.1 20 FATFDKDNSGTLDKTELKAALK 41
                8889************987665 PP

  == domain 2  score: 5.1 bits;  conditional E-value: 0.011
  EF-hand_10  27 FkkcDkSksgrLegeEieeFyklL 50 
                 F + D+ +sg L++ Ei e +k+L
  KOO23210.1 451 FERYDRDRSGLLDEREIREAFKQL 474
                 8999*************9877765 PP

  == domain 3  score: 0.5 bits;  conditional E-value: 0.32
  EF-hand_10  27 FkkcDkSksgrLegeEieeFyk 48 
                 F ++   ++g+L   E+e+ y+
  KOO23210.1 637 FHTANSNNDGKLSLAEFEKLYR 658
                 88889999**********9996 PP

>> Caleosin  Caleosin related protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.5   0.0     0.034        62      11      45 ..      21      55 ..      14      91 .. 0.77
   2 ?   -1.9   0.0       1.6   2.8e+03     108     151 ..     117     160 ..     106     170 .. 0.70
   3 ?   -1.6   0.0       1.2   2.2e+03     126     148 ..     392     413 ..     371     419 .. 0.66
   4 ?    0.1   0.0      0.37   6.6e+02      98     121 ..     450     473 ..     443     491 .. 0.66
   5 ?   -3.1   0.0       3.7   6.6e+03      95     119 ..     483     507 ..     479     517 .. 0.81
   6 ?    1.6   0.0      0.13   2.3e+02      13      35 ..     605     627 ..     597     646 .. 0.87

  Alignments for each domain:
  == domain 1  score: 3.5 bits;  conditional E-value: 0.034
    Caleosin 11 aFfDrdkdGiiypldtyrgfralgfnvllsllaal 45
                a fD+d+ G++  ++   ++++lg++++++ ++a+
  KOO23210.1 21 ATFDKDNSGTLDKTELKAALKHLGMDYTTAEAIAI 55
                569*********************99988855444 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 1.6
    Caleosin 108 daltlkevlellkgqrealDlfgwlaallewlalylllkdkdgl 151
                 da++ +e+ + +k+q+ ++ l+ +  al e+   y+ l+ k+ +
  KOO23210.1 117 DAVKPQEISQQMKSQEVLNALTNFKVALSELFEQYARLQGKSIR 160
                 66777788888888888877777777777777777766655554 PP

  == domain 3  score: -1.6 bits;  conditional E-value: 1.2
    Caleosin 126 lDlfgwlaallewlalylllkdk 148
                 +D  g l   +ew+a+y l  +k
  KOO23210.1 392 ADGGGPLPIAVEWSATYRLG-PK 413
                 67777788899******997.44 PP

  == domain 4  score: 0.1 bits;  conditional E-value: 0.37
    Caleosin  98 ifskyakekkdaltlkevlellkg 121
                  f++y++++++ l  +e+ e +k+
  KOO23210.1 450 AFERYDRDRSGLLDEREIREAFKQ 473
                 566666666666666666655543 PP

  == domain 5  score: -3.1 bits;  conditional E-value: 3.7
    Caleosin  95 feeifskyakekkdaltlkevlell 119
                   ++ sky++  ++++ + ++++++
  KOO23210.1 483 IKAVMSKYSDAADGKIDIGQFNRMV 507
                 5678899999999999999999987 PP

  == domain 6  score: 1.6 bits;  conditional E-value: 0.13
    Caleosin  13 fDrdkdGiiypldtyrgfralgf 35 
                  D + dG ++  +   g+r+lg+
  KOO23210.1 605 IDANGDGALTQAELLPGLRKLGV 627
                 599******************96 PP

>> CysA_C_terminal  CysA C-terminal regulatory domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.7   0.0     0.006        11      18      39 ..      77      98 ..      72     101 .. 0.82
   2 ?    2.7   0.1      0.11   1.9e+02       8      34 ..     494     524 ..     491     524 .. 0.87

  Alignments for each domain:
  == domain 1  score: 6.7 bits;  conditional E-value: 0.006
  CysA_C_terminal 18 alpvPelagadgqevvayVRPh 39
                      l++ ++++++ +e++++VRP 
       KOO23210.1 77 VLELQAEQQRAKEEARLGVRPS 98
                     5677777888999********6 PP

  == domain 2  score: 2.7 bits;  conditional E-value: 0.11
  CysA_C_terminal   8 edGklriGg...lalpvP.elagadgqevva 34 
                       dGk+ iG+   + ++++ ++++a++++vva
       KOO23210.1 494 ADGKIDIGQfnrMVIDLHrRAQEAADRSVVA 524
                      69******98889999998999999999997 PP

>> DUF1018  Protein of unknown function (DUF1018)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.0       2.2     4e+03      14      34 ..      23      43 ..      20      47 .. 0.87
   2 ?    9.1   0.4    0.0014       2.6       8      55 ..      54     106 ..      53     142 .. 0.78
   3 ?    2.5   0.3      0.15   2.7e+02      32      94 ..     259     340 ..     250     352 .. 0.66

  Alignments for each domain:
  == domain 1  score: -1.2 bits;  conditional E-value: 2.2
     DUF1018 14 tgktSakdLtdaelakvlaeL 34
                ++k+ +  L+ +el++ l++L
  KOO23210.1 23 FDKDNSGTLDKTELKAALKHL 43
                68888999***********99 PP

  == domain 2  score: 9.1 bits;  conditional E-value: 0.0014
     DUF1018   8 alLerltgktSakdLtdaelakvlaeLkalgfkpkskkkakrkkpar.....k 55 
                 a+Ler+   t+ kdL+ +e+++++ eL+a++ + k++++ + +++a      +
  KOO23210.1  54 AILERYDSATTNKDLDINEFNAMVLELQAEQQRAKEEARLGVRPSATaataaA 106
                 578888889999*******************9999999999888877444432 PP

  == domain 3  score: 2.5 bits;  conditional E-value: 0.15
     DUF1018  32 aeLkalgfkpkskkkakrkkpar..................katsaqlrkieal.WielakagvvrdrseaaLnafvkrqtg 94 
                 a+++a+  k++s +k+k+ ++++                  ++ +a +r   al  ++++k  +vr++s +a+++  +r  g
  KOO23210.1 259 AKMRARFTKSSSDNKPKSGAASAagggagkgavaaptalgaAPLEARKREAAALkLQAVQKGRMVRENSPQAIAKAHRRPKG 340
                 444444433333333333222224566888999999999876666666666677666677899999***9999999888655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (658 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1052  (0.0586759); expected 358.6 (0.02)
Passed bias filter:                      662  (0.0369234); expected 358.6 (0.02)
Passed Vit filter:                        62  (0.00345808); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.65u 0.26s 00:00:00.91 Elapsed: 00:00:00.41
# Mc/sec: 4873.11
//
Query:       KOO23211.1  [L=240]
Description: hypothetical protein Ctob_001606 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.7e-08   33.7   0.6    1.8e-07   30.6   0.1    2.2  2  EF-hand_6  EF-hand domain
    1.9e-08   33.3   0.8    2.1e-06   26.9   0.0    2.2  2  EF-hand_1  EF hand
    3.9e-07   29.3   1.4    0.00023   20.5   0.1    2.2  2  EF-hand_5  EF hand
    6.5e-07   29.7   0.0      1e-06   29.1   0.0    1.3  1  EF-hand_7  EF-hand domain pair
    0.00061   19.6   0.7     0.0092   15.8   0.1    2.3  2  EF-hand_8  EF-hand domain pair
  ------ inclusion threshold ------
        0.3   10.0   4.2       0.46    9.5   4.2    1.3  1  DEC-1_N    DEC-1 protein, N-terminal region


Domain annotation for each model (and alignments):
>> EF-hand_6  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.6   0.1   5.9e-11   1.8e-07       2      31 .]     133     161 ..     132     161 .. 0.95
   2 ?    1.2   0.1      0.16   4.7e+02       6      17 ..     172     183 ..     170     185 .. 0.81

  Alignments for each domain:
  == domain 1  score: 30.6 bits;  conditional E-value: 5.9e-11
   EF-hand_6   2 lreaFklfDkdgdGkidaeElrkalrkalg 31 
                 l++aF++fD+dg+G+++++E+ +alr +lg
  KOO23211.1 133 LDKAFDKFDRDGSGYLSMKEVAAALR-SLG 161
                 789***********************.887 PP

  == domain 2  score: 1.2 bits;  conditional E-value: 0.16
   EF-hand_6   6 FklfDkdgdGki 17 
                 F   D dgdG +
  KOO23211.1 172 FADADADGDGAL 183
                 677799***976 PP

>> EF-hand_1  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.9   0.0     7e-10   2.1e-06       2      29 .]     133     160 ..     132     160 .. 0.94
   2 !    4.9   0.2    0.0072        22       6      16 ..     172     182 ..     172     183 .. 0.88

  Alignments for each domain:
  == domain 1  score: 26.9 bits;  conditional E-value: 7e-10
                 HHHHHHHHTTTSSSEEEHHHHHHHHHHH CS
   EF-hand_1   2 lkeiFrefDkDgdGkIdfeEfkellkkl 29 
                 l+++F++fD+Dg+G+++ +E  ++l++l
  KOO23211.1 133 LDKAFDKFDRDGSGYLSMKEVAAALRSL 160
                 89**********************9985 PP

  == domain 2  score: 4.9 bits;  conditional E-value: 0.0072
                 HHHHTTTSSSE CS
   EF-hand_1   6 FrefDkDgdGk 16 
                 F+++D DgdG 
  KOO23211.1 172 FADADADGDGA 182
                 899*******5 PP

>> EF-hand_5  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.5   0.1   7.6e-08   0.00023       1      20 [.     133     152 ..     133     157 .. 0.91
   2 !    7.9   0.2   0.00075       2.2       4      15 ..     171     182 ..     169     183 .. 0.83

  Alignments for each domain:
  == domain 1  score: 20.5 bits;  conditional E-value: 7.6e-08
                 HHHHHHHH-SS-SSCE-HHH CS
   EF-hand_5   1 lkdtFqaiDlNgDGkIskeE 20 
                 l+++F+++D +g+G++s+ E
  KOO23211.1 133 LDKAFDKFDRDGSGYLSMKE 152
                 6789**************99 PP

  == domain 2  score: 7.9 bits;  conditional E-value: 0.00075
                 HHHHH-SS-SSC CS
   EF-hand_5   4 tFqaiDlNgDGk 15 
                  F  +D++gDG 
  KOO23211.1 171 HFADADADGDGA 182
                 4999*******6 PP

>> EF-hand_7  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.1   0.0   3.4e-10     1e-06       4      61 ..     133     183 ..     130     185 .. 0.87

  Alignments for each domain:
  == domain 1  score: 29.1 bits;  conditional E-value: 3.4e-10
   EF-hand_7   4 lkeaFkelDtdgdgyldkeellrllrkifqgagegsklsdeelellfkefDtdkdGvi 61 
                 l  aF+++D+dg+gyl++ e+  +lr      + g +++++ l ++ +  D d+dG +
  KOO23211.1 133 LDKAFDKFDRDGSGYLSMKEVAAALR------SLGMEVTPKTLAHFADA-DADGDGAL 183
                 6678**********************......99999999777777666.*****976 PP

>> EF-hand_8  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.1   3.1e-06    0.0092      28      52 ..     133     157 ..     108     160 .. 0.82
   2 ?    3.2   0.0     0.027        81      13      43 ..     156     183 ..     153     185 .. 0.74

  Alignments for each domain:
  == domain 1  score: 15.8 bits;  conditional E-value: 3.1e-06
   EF-hand_8  28 vdilfrefDtdgdGkisfeEFcvll 52 
                 +d  f++fD+dg+G++s +E  + l
  KOO23211.1 133 LDKAFDKFDRDGSGYLSMKEVAAAL 157
                 56679**************988766 PP

  == domain 2  score: 3.2 bits;  conditional E-value: 0.027
   EF-hand_8  13 ilrilglkkglseeevdilfrefDtdgdGki 43 
                 +lr+lg++  ++++ + + f  +D dgdG++
  KOO23211.1 156 ALRSLGME--VTPKTLAH-FADADADGDGAL 183
                 34778888..88888877.445799999987 PP

>> DEC-1_N  DEC-1 protein, N-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   4.2   0.00015      0.46     114     155 ..      62     104 ..      19     134 .. 0.84

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 0.00015
     DEC-1_N 114 Gaaapapalaaapppapapvpddp.apapaapqaaafaffnpa 155
                 Ga+ pap  ++ p pa ap p+dp     a+p ++ +  ++pa
  KOO23211.1  62 GATRPAPSSTSYPAPAAAPNPNDPyRSSQATPASSVYLNLQPA 104
                 5568*****************9996677888877777888887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (240 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       431  (0.0240393); expected 358.6 (0.02)
Passed bias filter:                      287  (0.0160076); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.42u 0.23s 00:00:00.65 Elapsed: 00:00:00.39
# Mc/sec: 1845.05
//
Query:       KOO23212.1  [L=133]
Description: hypothetical protein Ctob_001605 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (133 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1254  (0.0699426); expected 358.6 (0.02)
Passed bias filter:                      650  (0.0362541); expected 358.6 (0.02)
Passed Vit filter:                        65  (0.00362541); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.26s 00:00:00.64 Elapsed: 00:00:00.39
# Mc/sec: 1035.11
//
Query:       KOO23213.1  [L=285]
Description: calcium-dependent cysteine [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
      6e-20   71.4   0.0    9.1e-20   70.9   0.0    1.2  1  Peptidase_C2  Calpain family cysteine protease


Domain annotation for each model (and alignments):
>> Peptidase_C2  Calpain family cysteine protease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.9   0.0   5.1e-24   9.1e-20     128     222 ..     183     277 ..     168     282 .. 0.86

  Alignments for each domain:
  == domain 1  score: 70.9 bits;  conditional E-value: 5.1e-24
  Peptidase_C2 128 fWsalleKAyAklhgsyealkggstsealedftggvtesiel..elkeapkelfkilkkalergslmgcsieassaeeleaklengLvkgHaYsvta 222
                    W+al+eKA+Aklhgsy+al+gg+++eal+d+tggv+e+++l  e +ea++ l + lkka+e+++lm+c+ +   +++ e   +  + ++HaY++++
    KOO23213.1 183 GWAALVEKAFAKLHGSYAALEGGRSIEALVDLTGGVCEQLRLtdEGAEAQSLLGTSLKKAYEQRALMCCTRR--GRAKGEPDDAPHIPANHAYAILE 277
                   5****************************************96544455555889999*********99887..556777777899********986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (285 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       304  (0.0169558); expected 358.6 (0.02)
Passed bias filter:                      261  (0.0145574); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.22s 00:00:00.61 Elapsed: 00:00:00.36
# Mc/sec: 2360.90
//
Query:       KOO23214.1  [L=316]
Description: hypothetical protein Ctob_008213 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.026   13.7   8.0      0.035   13.3   8.0    1.1  1  Med3      Mediator complex subunit 3 fungal
       0.53    9.4   3.9       0.29   10.3   1.0    1.8  2  DUF844    Baculovirus protein of unknown function (DUF844)


Domain annotation for each model (and alignments):
>> Med3  Mediator complex subunit 3 fungal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   8.0   3.9e-06     0.035     140     289 ..     146     313 ..     131     316 .] 0.65

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 3.9e-06
        Med3 140 stpssaastPtttatPgantktaakslpapn.ata...........tigtptnsaaaaattatt.tssqakkPr...kPrqtkk..aaakaaakaqaqa 220
                  + s+ a t +t+a P a +   a+ l a + a a           +i  ++  a aa  t+++ t s++++ r    Pr      a+a+ aa+a aqa
  KOO23214.1 146 PSTSAMAGTAATAAVPAAPPF-FANGLDARAvAVAyedlvaqgappSIALNAARARAAGLTTQShTESETRRLRamlAPRGIINlqARARMAAEATAQA 243
                 445566666666666665543.33344332213336666656666666666655655555554314455555553334776444558888899999998 PP

        Med3 221 qaqaqaqqqvlanpnqvqtPiaanamnnmnamraalpnptpsmlnsvsPtnvmGtPltn....mmsPmaavql 289
                  ++ +++q   a   +vq P aa++     + +++ p  + +       t+++G Pl       +sP+a+v  
  KOO23214.1 244 AEKELQRQHRPASSREVQRPSAAEPSV---SSATSDPLQSIGYQTRSLDTQIVGDPLHSigyqTISPIAQVSF 313
                 877777666577777*******96644...445678888998888888999******9988889****98865 PP

>> DUF844  Baculovirus protein of unknown function (DUF844)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.2   0.1     0.049   4.4e+02      86     121 ..     184     219 ..     169     221 .. 0.74
   2 ?   10.3   1.0   3.2e-05      0.29      87     121 ..     219     253 ..     206     276 .. 0.72

  Alignments for each domain:
  == domain 1  score: -0.2 bits;  conditional E-value: 0.049
      DUF844  86 sasltPrpvinlf.arallvatattaeelldtkryrs 121
                  a+ +P p i l  ara ++  +t ++   +t+r r+
  KOO23214.1 184 VAQGAP-PSIALNaARARAAGLTTQSHTESETRRLRA 219
                 688889.777775268888888888999999999875 PP

  == domain 2  score: 10.3 bits;  conditional E-value: 3.2e-05
      DUF844  87 asltPrpvinlfarallvatattaeelldtkryrs 121
                 a l+Pr +inl ara ++a at+     +++r + 
  KOO23214.1 219 AMLAPRGIINLQARARMAAEATAQAAEKELQRQHR 253
                 8899**********998876655544444455443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (316 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       714  (0.0398237); expected 358.6 (0.02)
Passed bias filter:                      371  (0.0206927); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.42u 0.23s 00:00:00.65 Elapsed: 00:00:00.36
# Mc/sec: 2612.89
//
Query:       KOO23215.1  [L=335]
Description: endonuclease iii 8-oxoguanine DNA glycosylase isoform 1b [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.3e-14   53.2   0.0      7e-14   52.2   0.0    1.6  1  HhH-GPD   HhH-GPD superfamily base excision DNA repair protei
    1.8e-05   24.4   0.2    0.00023   20.8   0.0    2.5  2  HHH       Helix-hairpin-helix motif
  ------ inclusion threshold ------
      0.068   13.8   0.0       0.83   10.3   0.0    2.4  2  HHH_5     Helix-hairpin-helix domain
          8    7.2  16.5       0.43   11.3  10.0    2.1  2  MAGE_N    Melanoma associated antigen family N terminal


Domain annotation for each model (and alignments):
>> HhH-GPD  HhH-GPD superfamily base excision DNA repair protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.2   0.0   1.6e-17     7e-14       2      85 ..      24     179 ..      23     201 .. 0.96

  Alignments for each domain:
  == domain 1  score: 52.2 bits;  conditional E-value: 1.6e-17
                 HHHHHTTS-HHHHHHHHHHHHHHHS....................................HCSHHHHHHSHHHHHHHHHTTSTTHHHHHHHHHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxx....................................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
     HhH-GPD   2 sailsqqtsderanriierlferfg....................................fptpedladadeekLrelirelGfyrrKakyikelAri 64 
                 s+i+s++++++r+  + +++++++g                                    fp++ ++a+a+ee+Lr+l    G++ ++a+y++++A+ 
  KOO23215.1  24 SFICSSNNNIKRIGGMLQSIRQQYGtkiplatlgaeaaseqaaatelsapvghggaadfytFPSAAAMAAASEEELRKL----GLG-YRAPYLRQTAQR 117
                 89*****************************************************************************....***.************ PP

                 HH..........................................S-SSS--TTSHHHHHHHHH CS
                 xx..........................................xxxxxxxxxxxxxxxxxxx RF
     HhH-GPD  65 lv..........................................gkpdvlivvDvhvrrilkr 85 
                 l                                           ++   +++vDvhv+ i++r
  KOO23215.1 118 LTregaswlkslrmerdpnvvratltelpgvgpkvadcvalfslDQ-HSCVPVDVHVWEIACR 179
                 ******************************************9744.36999********988 PP

>> HHH  Helix-hairpin-helix motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.6   0.1      0.14   6.3e+02       7      16 ..      93     102 ..      92     102 .. 0.87
   2 !   20.8   0.0   5.2e-08   0.00023      10      29 ..     139     158 ..     130     159 .. 0.86

  Alignments for each domain:
  == domain 1  score: 0.6 bits;  conditional E-value: 0.14
                 TSSHHHHHTS CS
         HHH   7 pasreeLlal 16 
                 +as+eeL +l
  KOO23215.1  93 AASEEELRKL 102
                 69*****987 PP

  == domain 2  score: 20.8 bits;  conditional E-value: 5.2e-08
                 HHHHHTSTT-SHHHHHHHHH CS
         HHH  10 reeLlalPGVGpktAeaIls 29 
                 r+ L++lPGVGpk+A++++ 
  KOO23215.1 139 RATLTELPGVGPKVADCVAL 158
                 678**************986 PP

>> HHH_5  Helix-hairpin-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.3   0.0      0.24   1.1e+03      23      44 ..      85     105 ..      82     107 .. 0.83
   2 ?   10.3   0.0   0.00019      0.83      34      49 ..     139     154 ..     112     159 .. 0.71

  Alignments for each domain:
  == domain 1  score: 0.3 bits;  conditional E-value: 0.24
                 --SHHHHHHS-HHHHHTSTTS- CS
       HHH_5  23 iesvedlaaadveeLakipGiG 44 
                 + s ++ aaa++eeL k+ G+G
  KOO23215.1  85 FPSAAAMAAASEEELRKL-GLG 105
                 56788999*******998.655 PP

  == domain 2  score: 10.3 bits;  conditional E-value: 0.00019
                 HHHHHTSTTS-HHHHH CS
       HHH_5  34 veeLakipGiGkktAe 49 
                 +++L+++pG+G+k A+
  KOO23215.1 139 RATLTELPGVGPKVAD 154
                 5779999999999886 PP

>> MAGE_N  Melanoma associated antigen family N terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.4      0.68     3e+03      55      76 ..      70      96 ..      52     101 .. 0.51
   2 ?   11.3  10.0   9.6e-05      0.43       6      79 ..     244     316 ..     241     325 .. 0.75

  Alignments for each domain:
  == domain 1  score: -1.1 bits;  conditional E-value: 0.68
      MAGE_N 55 psapqspqg.....apssttaaaavsr 76
                 sap +  g       +s++a+aa+s 
  KOO23215.1 70 LSAPVGHGGaadfyTFPSAAAMAAASE 96
                444443333333333455556666554 PP

  == domain 2  score: 11.3 bits;  conditional E-value: 9.6e-05
      MAGE_N   6 rarEkrrqaraetqglegaQataaeeeestssssplsedtpesspaagtpsapqspqgapssttaaaavsrtrs 79 
                 + rEk   arae+++  +a+a  + e e   + +p+   ++ ++pa+ ++++p ++ + +++++aa a++r+ s
  KOO23215.1 244 HEREKKAVARAEKKARAEAKAEIKDEDE-NKTLPPDDAPATAPLPASTATKPPRKRSSLAAAAAAASAALREAS 316
                 78*******************9999999.556677777777778877777777765555555555555555544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (335 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1331  (0.0742373); expected 358.6 (0.02)
Passed bias filter:                      764  (0.0426125); expected 358.6 (0.02)
Passed Vit filter:                        67  (0.00373696); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.51u 0.24s 00:00:00.75 Elapsed: 00:00:00.38
# Mc/sec: 2674.06
//
Query:       KOO23216.1  [L=146]
Description: hypothetical protein Ctob_008211 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    0.00097   18.5   1.9     0.0011   18.4   1.9    1.1  1  7tm_1          7 transmembrane receptor (rhodopsin family)
     0.0011   19.3   6.0     0.0013   19.0   6.0    1.1  1  EI24           Etoposide-induced protein 2.4 (EI24)
     0.0051   16.1   2.4     0.0073   15.6   2.4    1.3  1  MIG-14_Wnt-bd  Wnt-binding factor required for Wnt secretion
  ------ inclusion threshold ------
       0.42   10.6   0.2       0.42   10.6   0.2    2.3  3  FtsL           Cell division protein FtsL


Domain annotation for each model (and alignments):
>> 7tm_1  7 transmembrane receptor (rhodopsin family)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.4   1.9   2.4e-07    0.0011     112     219 ..      17     125 ..       1     140 [. 0.72

  Alignments for each domain:
  == domain 1  score: 18.4 bits;  conditional E-value: 2.4e-07
                 HHHHHHHHHHHHCEECC.CTTTT..CCEEECSSST.HHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHCHHHHSHCCHHHHHHCTTCHHH..HHHH CS
                 xxxxxxxxxxxxxxxxx.xxxxx..xxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxx RF
       7tm_1 112 lslllsvpllvletvet.naedt..tkdCqittle.esvyiifsavlsfilPllvivilyarifrtvlktsrtktsksknggsstpplkavre..kkaa 204
                 +++++s++ +++       + d+   ++C++t+++ + + ++ + +l f ++++++++ ya ++  +++   + ++ + + g++  p        ++++
  KOO23216.1  17 AAFAFSMLVMIVVAYAAlPDRDEllDTTCSFTYQQlDTTCVWAYVTLLFSVMAVIVFLWYALVCMMLWRDYTQVEESRLKPGVGDAP-----GgwEQVC 110
                 344444444444444332333336899********988888888889999999999999************9999944444555555.....1447999 PP

                 HHHHHHHHHHHHHHH CS
                 xxxxxxxxxxxxxxx RF
       7tm_1 205 rtlgivvavfivcwl 219
                 + +g++++v ++c l
  KOO23216.1 111 KQVGALLLVLLICIL 125
                 999999999999976 PP

>> EI24  Etoposide-induced protein 2.4 (EI24)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.0   6.0     3e-07    0.0013      23     109 ..      19     130 ..       4     136 .. 0.75

  Alignments for each domain:
  == domain 1  score: 19.0 bits;  conditional E-value: 3e-07
                 HHHHHHHHHHHHHHHH............-.......TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH.HH........CCTTSHHHHHHH CS
        EI24  23 lllnlllfllllvlll............w.......vllasllvllllllplwlfplvalllaapfygllaekvekrhl........glvkslaeslks 94 
                 ++ ++l+++++++++l            +       +   + +++ ll+ +  ++++++ +l++++++  + +ve+++l        g ++++  ++  
  KOO23216.1  19 FAFSMLVMIVVAYAALpdrdelldttcsFtyqqldtTC--VWAYVTLLFSVMAVIVFLWYALVCMMLWRDYTQVEESRLkpgvgdapGGWEQVCKQVGA 115
                 45555666655555558888877776661455564433..447788888888888899*****************9988898999998999999***** PP

                 HHHHHHHHHHHHHHH CS
        EI24  95 lllllllllvllpll 109
                 lll+ll+ +++++l 
  KOO23216.1 116 LLLVLLICILVTALN 130
                 *******99999993 PP

>> MIG-14_Wnt-bd  Wnt-binding factor required for Wnt secretion
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   2.4   1.6e-06    0.0073     168     256 ..      26     135 ..       5     144 .. 0.62

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 1.6e-06
  MIG-14_Wnt-bd 168 lvllvlalyerleqlkdpfysiwss........alilkilaiilavlyfly...Llylifrsfseirskrvk..........egdi.Rfkflillt 241
                    ++++ +a +    +l d + s+  +        a ++ +l+ ++av+ fl+   ++++++r +++++++r+k          e +   +  l+l+ 
     KOO23216.1  26 MIVVAYAALPDRDELLDTTCSFTYQqldttcvwA-YVTLLFSVMAVIVFLWyalVCMMLWRDYTQVEESRLKpgvgdapggwEQVCkQVGALLLVL 120
                    3333333333333333333333322222244432.5555555555555555222578889999999998888999999999976776899999999 PP

  MIG-14_Wnt-bd 242 llvlavlvifiilgl 256
                    l++++v+++++ + +
     KOO23216.1 121 LICILVTALNVASII 135
                    999999998887665 PP

>> FtsL  Cell division protein FtsL
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.3       1.3   5.7e+03      17      24 ..      23      29 ..      11      34 .. 0.47
   2 ?   -0.2   0.2      0.22   9.8e+02      19      32 ..      62      72 ..      47      95 .. 0.54
   3 ?   10.6   0.2   9.4e-05      0.42      10      33 ..     111     134 ..     106     142 .. 0.85

  Alignments for each domain:
  == domain 1  score: -2.6 bits;  conditional E-value: 1.3
        FtsL 17 llllllvl 24
                + l+++v+
  KOO23216.1 23 M-LVMIVV 29
                2.222222 PP

  == domain 2  score: -0.2 bits;  conditional E-value: 0.22
        FtsL 19 llllvlvsavavvl 32
                 ll   +s +av+ 
  KOO23216.1 62 TLL---FSVMAVIV 72
                222...22222222 PP

  == domain 3  score: 10.6 bits;  conditional E-value: 9.4e-05
        FtsL  10 lsvgkvlllllllvlvsavavvli 33 
                  +vg +ll+ll+++lv+a+ v  i
  KOO23216.1 111 KQVGALLLVLLICILVTALNVASI 134
                 578999*************99876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (146 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1074  (0.059903); expected 358.6 (0.02)
Passed bias filter:                      460  (0.0256568); expected 358.6 (0.02)
Passed Vit filter:                        59  (0.00329076); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.43u 0.24s 00:00:00.67 Elapsed: 00:00:00.39
# Mc/sec: 1117.61
//
Query:       KOO23217.1  [L=378]
Description: endoplasmic oxidoreductin-2 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.4e-46  158.1   0.0    5.4e-45  154.1   0.0    2.0  1  ERO1      Endoplasmic Reticulum Oxidoreductin 1 (ERO1)
  ------ inclusion threshold ------
        0.2   11.7   0.0       0.37   10.8   0.0    1.4  1  B         B domain


Domain annotation for each model (and alignments):
>> ERO1  Endoplasmic Reticulum Oxidoreductin 1 (ERO1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  154.1   0.0     6e-49   5.4e-45       2     353 ..      53     357 ..      52     358 .. 0.82

  Alignments for each domain:
  == domain 1  score: 154.1 bits;  conditional E-value: 6e-49
        ERO1   2 lrplLkeLvktdfFryfkvnldkeCpfweddeglCanraCaveeceeeeiPekwraeelsklertlseeeesavkeakeeeeaeeedyceledeeeeea 100
                 + plL++L + dfF+yf  +l  +C ++ ++e+ C+  +C+ve    e++Pe +ra++ls+ e                       d++  +d  ++ +
  KOO23217.1  53 VVPLLQQLQEFDFFSYFAFDLLASCSYMPTSENPCELDRCEVEPA--EDVPEALRARDLSESEF--------------------ALDCWARKDMPSDFT 129
                 7899**************************************985..679***99995543222....................347888888888889 PP

        ERO1 101 vyvdLlenperfTgYkGesaervWkaiYeencfkeeseseeseekeleelclekrvfyrliSGlhasisihlaaeylnqetgewepnlelfkervgkhp 199
                 +y dL    er TgY+G++   +W+ i+++ cf+e+ e           ++  kr f+r +SG+ha++  ++ ++   +++g+       +++r++++p
  KOO23217.1 130 EYYDLRVATERNTGYDGRR---IWRFIHQKICFQENLE---------LLESGWKRDFNRAVSGMHAAVDCQILNDIGLTSEGR-----VEYQRRLRDEP 211
                 *****************99...***********88654.........2456679*********************99987755.....579******** PP

        ERO1 200 erlenlYfnyalvlrAvaklapyleelefstgeeeedeetkellke..elakellsalsskekafdesklfkdkeeaeelkeefrerfrnisrimdCVg 296
                 + + nlYf+y+l+l A+   ++ l++ ++   e  e   + ++l+    +++e ++a++  ++  d+++l       ++   + r r+r++++im+CV+
  KOO23217.1 212 DSIANLYFAYMLTLCAIRDCRERLDKCRYLG-EGGEVLPVMRALTAsaLVNDEAVQAAA--RNLRDHAQL------PTAAVWKARLRTRDLTAIMNCVQ 301
                 **************************99885.443333333333332334333333332..234444444......4455666778899********** PP

        ERO1 297 CekCrLwGKlqttGlgtAlkilfeeeekeeekklkLernevvALintlerlseSiea 353
                 C+ CrL+GK+   Glg  +++l+ ++ +   ++l+L+r +v AL+ t++++ ++ ++
  KOO23217.1 302 CNLCRLHGKVMALGLGATMQVLLGDDGRG-GDPLALDRAQVGALVATAAKFGNACQI 357
                 *************************9865.67999***************9988765 PP

>> B  B domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   4.1e-05      0.37      14      44 ..     188     218 ..     187     220 .. 0.94

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 4.1e-05
                 HHCC-TTS-HHHHHHHHHHHHH-GGGHHHHH CS
           B  14 evLklpnlteeqrNgyIqslkddPsrsqnvl 44 
                 ++L+  +lt e r +y + l+d+P+  +n++
  KOO23217.1 188 QILNDIGLTSEGRVEYQRRLRDEPDSIANLY 218
                 89***********************999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (378 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       446  (0.0248759); expected 358.6 (0.02)
Passed bias filter:                      364  (0.0203023); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.49u 0.25s 00:00:00.74 Elapsed: 00:00:00.40
# Mc/sec: 2801.46
//
Query:       KOO23218.1  [L=189]
Description: hypothetical protein Ctob_008209, partial [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
      2e-11   44.0   5.1    2.7e-11   43.5   5.1    1.1  1  YbaB_DNA_bd  YbaB/EbfC DNA-binding family
  ------ inclusion threshold ------
      0.052   13.7   0.2      0.089   13.0   0.2    1.3  1  DUF2007      Putative prokaryotic signal transducing protein
       0.17   11.5   1.6       0.22   11.2   0.1    1.8  2  TGBp3        Triple gene block 3


Domain annotation for each model (and alignments):
>> YbaB_DNA_bd  YbaB/EbfC DNA-binding family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.5   5.1   4.5e-15   2.7e-11       2      87 ..      94     178 ..      93     183 .. 0.95

  Alignments for each domain:
  == domain 1  score: 43.5 bits;  conditional E-value: 4.5e-15
                  HHHHHHHHHHHHHHHHHTTSEEEEEETTTTEEEEEETT--EEEEEE-GGGG.GS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT CS
  YbaB_DNA_bd   2 kqaqkmqkkmeeaqeelaekevegssggglVkVtvngkgevksikIdpslldpedkemLedlivaAvndAlkkaeeeaeeemsklt 87 
                  k+aq++  k++++qeela++e+e+ s++g  +V+++g +   s+++ ++ll +   + +++ +  A ++A++++  +a+e+m+ l 
   KOO23218.1  94 KKAQQVGVKVKALQEELAQTEIEAISADGGCTVVISGAQVPISVEVTEALLAKG-SKAVSEAVSVAAKEAHTNSVSYAQEQMATLY 178
                  89************************************************9866.789************************9886 PP

>> DUF2007  Putative prokaryotic signal transducing protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.2   1.5e-05     0.089      11      65 ..     101     153 ..      93     154 .. 0.89

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 1.5e-05
     DUF2007  11 veaelikslLeeagIeavvkdeftssileGa.lgelpvrilVaeedleeAreilee 65 
                 v+++ +++ L + +Iea+ +d + + +++Ga +   p+ + V e+ l++  + + e
  KOO23218.1 101 VKVKALQEELAQTEIEAISADGGCTVVISGAqV---PISVEVTEALLAKGSKAVSE 153
                 7999*******************9999****65...79****99999988877766 PP

>> TGBp3  Triple gene block 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.1      0.42   2.5e+03       9      19 ..      47      54 ..      40      63 .. 0.52
   2 ?   11.2   0.1   3.6e-05      0.22      23      39 ..     120     136 ..     115     149 .. 0.80

  Alignments for each domain:
  == domain 1  score: -1.8 bits;  conditional E-value: 0.42
       TGBp3  9 llvallalyll 19
                    lla+++l
  KOO23218.1 47 N---LLACAAL 54
                3...3333333 PP

  == domain 2  score: 11.2 bits;  conditional E-value: 3.6e-05
       TGBp3  23 ssegCvivITGesvtit 39 
                 +  gC++vI+G++v i+
  KOO23218.1 120 ADGGCTVVISGAQVPIS 136
                 5679**********987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (189 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       894  (0.0498633); expected 358.6 (0.02)
Passed bias filter:                      600  (0.0334653); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.40u 0.21s 00:00:00.61 Elapsed: 00:00:00.36
# Mc/sec: 1568.22
//
Query:       KOO23219.1  [L=560]
Description: hypothetical protein Ctob_008205 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.1e-19   69.7  12.9    5.5e-11   42.8   1.7    4.0  4  EF-hand_7     EF-hand domain pair
    3.5e-19   67.0  17.9    2.6e-05   23.8   0.5    5.2  5  EF-hand_6     EF-hand domain
    6.8e-17   60.1  10.3    1.4e-05   24.3   0.0    4.4  4  EF-hand_5     EF hand
    1.5e-16   58.6  21.3    6.1e-05   22.3   0.0    5.4  6  EF-hand_1     EF hand
      1e-12   47.7  12.6     0.0015   18.3   0.0    4.7  5  EF-hand_8     EF-hand domain pair
    1.4e-05   25.3   0.7      0.037   14.3   0.0    2.9  2  SPARC_Ca_bdg  Secreted protein acidic and rich in cysteine Ca
     0.0042   16.9   1.9       0.56   10.1   0.2    3.1  3  EF-hand_10    EF hand
     0.0073   15.9   0.1      0.012   15.2   0.1    1.2  1  PARP          Poly(ADP-ribose) polymerase catalytic domain
  ------ inclusion threshold ------
      0.024   14.8   7.1       0.74    9.9   0.8    2.2  2  Sec16_N       Vesicle coat trafficking protein Sec16 N-termin


Domain annotation for each model (and alignments):
>> EF-hand_7  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.2   2.0   7.2e-13   1.4e-09       4      67 ..      96     149 ..      93     153 .. 0.91
   2 !   42.8   1.7   2.8e-14   5.5e-11       5      70 ..     129     202 ..     128     203 .. 0.83
   3 !   10.4   0.0   0.00034      0.68      11      35 ..     222     246 ..     213     279 .. 0.79
   4 ?   -1.7   0.2       2.1   4.2e+03      49      59 ..     324     334 ..     316     335 .. 0.56

  Alignments for each domain:
  == domain 1  score: 38.2 bits;  conditional E-value: 7.2e-13
   EF-hand_7   4 lkeaFkelDtdgdgyldkeellrllrkifqgagegsklsdeelellfkefDtdkdGvisfdEFl 67 
                  +  F+++D++gdg ++++el +++       ++++ + +    +lfk +Dtd+dG i+ dEF+
  KOO23219.1  96 AHALFRQIDKNGDGAITVRELCEFFV------STDDAFAR----RLFKAIDTDDDGLIDIDEFR 149
                 6788*****************99998......88888887....*******************7 PP

  == domain 2  score: 42.8 bits;  conditional E-value: 2.8e-14
   EF-hand_7   5 keaFkelDtdgdgyldkeellrllrkifqga.........gegsklsdeelellfkefDtdkdGvisfdEFlkly 70 
                 ++ Fk++Dtd+dg +d +e++ l +k  + +          e   l ++e+++lf ++D+d+dG+i+  E+ ++ 
  KOO23219.1 129 RRLFKAIDTDDDGLIDIDEFR-LAHKTATDTresvktffsPERRALEPQEIDALFAKIDLDRDGCITKRELTQYL 202
                 578******************.66654444468988888855555588**********************99986 PP

  == domain 3  score: 10.4 bits;  conditional E-value: 0.00034
   EF-hand_7  11 lDtdgdgyldkeellrllrkifqga 35 
                 +D+d+d  +dk e+l+++r ++ + 
  KOO23219.1 222 IDRDDDKLIDKKEFLSAYRGLDIAP 246
                 89***********999999877655 PP

  == domain 4  score: -1.7 bits;  conditional E-value: 2.1
   EF-hand_7  49 lfkefDtdkdG 59 
                  f ++D ++dG
  KOO23219.1 324 DFTDLDPNDDG 334
                 44455555555 PP

>> EF-hand_6  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.5   0.0   3.2e-07   0.00063       3      26 ..      97     120 ..      95     123 .. 0.89
   2 !   23.8   0.5   1.3e-08   2.6e-05       3      27 ..     129     153 ..     127     161 .. 0.90
   3 !   22.4   0.0   3.5e-08     7e-05       1      28 [.     177     204 ..     177     212 .. 0.93
   4 !   10.9   0.5   0.00017      0.35       9      27 ..     222     240 ..     219     243 .. 0.90
   5 ?   -2.1   0.8       2.7   5.4e+03       6      15 ..     325     334 ..     320     335 .. 0.80

  Alignments for each domain:
  == domain 1  score: 19.5 bits;  conditional E-value: 3.2e-07
   EF-hand_6   3 reaFklfDkdgdGkidaeElrkal 26 
                 +++F+++Dk+gdG i+  El  ++
  KOO23219.1  97 HALFRQIDKNGDGAITVRELCEFF 120
                 689*****************8875 PP

  == domain 2  score: 23.8 bits;  conditional E-value: 1.3e-08
   EF-hand_6   3 reaFklfDkdgdGkidaeElrkalr 27 
                 r++Fk++D+d+dG id++E+r a +
  KOO23219.1 129 RRLFKAIDTDDDGLIDIDEFRLAHK 153
                 89*******************9877 PP

  == domain 3  score: 22.4 bits;  conditional E-value: 3.5e-08
   EF-hand_6   1 elreaFklfDkdgdGkidaeElrkalrk 28 
                 e++++F ++D d+dG+i++ El + lr+
  KOO23219.1 177 EIDALFAKIDLDRDGCITKRELTQYLRD 204
                 6789**********************94 PP

  == domain 4  score: 10.9 bits;  conditional E-value: 0.00017
   EF-hand_6   9 fDkdgdGkidaeElrkalr 27 
                 +D+d+d  id++E+ +a+r
  KOO23219.1 222 IDRDDDKLIDKKEFLSAYR 240
                 7****************99 PP

  == domain 5  score: -2.1 bits;  conditional E-value: 2.7
   EF-hand_6   6 FklfDkdgdG 15 
                 F  +D ++dG
  KOO23219.1 325 FTDLDPNDDG 334
                 8999999999 PP

>> EF-hand_5  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.3   0.0   7.2e-09   1.4e-05       3      21 ..      98     116 ..      97     121 .. 0.90
   2 !   21.0   0.8   8.1e-08   0.00016       4      22 ..     131     149 ..     128     151 .. 0.92
   3 !   18.2   0.0   6.4e-07    0.0013       1      23 [.     178     200 ..     178     202 .. 0.90
   4 ?   -1.6   0.4       1.1   2.2e+03       8      21 ..     222     235 ..     220     238 .. 0.75

  Alignments for each domain:
  == domain 1  score: 24.3 bits;  conditional E-value: 7.2e-09
                 HHHHHH-SS-SSCE-HHHH CS
   EF-hand_5   3 dtFqaiDlNgDGkIskeEL 21 
                 ++F++iD+NgDG I++ EL
  KOO23219.1  98 ALFRQIDKNGDGAITVREL 116
                 58****************9 PP

  == domain 2  score: 21.0 bits;  conditional E-value: 8.1e-08
                 HHHHH-SS-SSCE-HHHHH CS
   EF-hand_5   4 tFqaiDlNgDGkIskeELk 22 
                 +F+aiD++ DG I+++E++
  KOO23219.1 131 LFKAIDTDDDGLIDIDEFR 149
                 7*****************7 PP

  == domain 3  score: 18.2 bits;  conditional E-value: 6.4e-07
                 HHHHHHHH-SS-SSCE-HHHHHH CS
   EF-hand_5   1 lkdtFqaiDlNgDGkIskeELkt 23 
                 ++++F +iDl++DG I+k EL +
  KOO23219.1 178 IDALFAKIDLDRDGCITKRELTQ 200
                 6789****************965 PP

  == domain 4  score: -1.6 bits;  conditional E-value: 1.1
                 H-SS-SSCE-HHHH CS
   EF-hand_5   8 iDlNgDGkIskeEL 21 
                 iD + D  I+k E+
  KOO23219.1 222 IDRDDDKLIDKKEF 235
                 67777767999998 PP

>> EF-hand_1  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.3   0.0     3e-08   6.1e-05       3      27 ..      97     121 ..      95     123 .. 0.89
   2 !   19.4   0.8   2.5e-07    0.0005       3      24 ..     129     150 ..     127     151 .. 0.91
   3 !   22.2   0.1   3.2e-08   6.4e-05       1      28 [.     177     204 ..     177     205 .. 0.94
   4 !    7.7   0.2    0.0014       2.8       9      27 ..     222     240 ..     216     242 .. 0.89
   5 ?   -2.3   0.8       2.2   4.4e+03       6      15 ..     325     334 ..     320     335 .. 0.83
   6 ?   -2.1   0.0       1.9   3.7e+03       6      14 ..     550     558 ..     549     558 .. 0.87

  Alignments for each domain:
  == domain 1  score: 22.3 bits;  conditional E-value: 3e-08
                 HHHHHHHTTTSSSEEEHHHHHHHHH CS
   EF-hand_1   3 keiFrefDkDgdGkIdfeEfkellk 27 
                   +Fr +Dk+gdG I+  E++e++ 
  KOO23219.1  97 HALFRQIDKNGDGAITVRELCEFFV 121
                 578*******************986 PP

  == domain 2  score: 19.4 bits;  conditional E-value: 2.5e-07
                 HHHHHHHTTTSSSEEEHHHHHH CS
   EF-hand_1   3 keiFrefDkDgdGkIdfeEfke 24 
                 +++F+ +D+D dG Id++Ef+ 
  KOO23219.1 129 RRLFKAIDTDDDGLIDIDEFRL 150
                 789*****************95 PP

  == domain 3  score: 22.2 bits;  conditional E-value: 3.2e-08
                 HHHHHHHHHTTTSSSEEEHHHHHHHHHH CS
   EF-hand_1   1 elkeiFrefDkDgdGkIdfeEfkellkk 28 
                 e++ +F+++D D+dG I++ E+ ++l++
  KOO23219.1 177 EIDALFAKIDLDRDGCITKRELTQYLRD 204
                 799*********************9986 PP

  == domain 4  score: 7.7 bits;  conditional E-value: 0.0014
                 HTTTSSSEEEHHHHHHHHH CS
   EF-hand_1   9 fDkDgdGkIdfeEfkellk 27 
                 +D+D d  Id++Ef+++ +
  KOO23219.1 222 IDRDDDKLIDKKEFLSAYR 240
                 8*************99876 PP

  == domain 5  score: -2.3 bits;  conditional E-value: 2.2
                 HHHHTTTSSS CS
   EF-hand_1   6 FrefDkDgdG 15 
                 F ++D + dG
  KOO23219.1 325 FTDLDPNDDG 334
                 8899****99 PP

  == domain 6  score: -2.1 bits;  conditional E-value: 1.9
                 HHHHTTTSS CS
   EF-hand_1   6 FrefDkDgd 14 
                 +r  D Dgd
  KOO23219.1 550 MRQCDEDGD 558
                 8899****9 PP

>> EF-hand_8  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.0   4.5e-06    0.0089      28      53 ..      96     121 ..      94     123 .. 0.92
   2 !   14.4   1.5   1.3e-05     0.025      31      48 ..     131     148 ..     123     149 .. 0.90
   3 !   18.3   0.0   7.5e-07    0.0015      23      53 ..     173     203 ..     163     205 .. 0.90
   4 ?    3.7   0.1     0.028        56      34      50 ..     221     237 ..     220     240 .. 0.87
   5 ?   -3.5   0.1       4.9   9.7e+03      30      40 ..     548     558 ..     547     558 .. 0.88

  Alignments for each domain:
  == domain 1  score: 15.9 bits;  conditional E-value: 4.5e-06
   EF-hand_8  28 vdilfrefDtdgdGkisfeEFcvlle 53 
                 +++lfr +D +gdG+i+  E c++++
  KOO23219.1  96 AHALFRQIDKNGDGAITVRELCEFFV 121
                 789********************986 PP

  == domain 2  score: 14.4 bits;  conditional E-value: 1.3e-05
   EF-hand_8  31 lfrefDtdgdGkisfeEF 48 
                 lf+++Dtd+dG i+ +EF
  KOO23219.1 131 LFKAIDTDDDGLIDIDEF 148
                 9****************9 PP

  == domain 3  score: 18.3 bits;  conditional E-value: 7.5e-07
   EF-hand_8  23 lseeevdilfrefDtdgdGkisfeEFcvlle 53 
                 l ++e+d+lf ++D+d+dG i++ E  ++l 
  KOO23219.1 173 LEPQEIDALFAKIDLDRDGCITKRELTQYLR 203
                 899********************99988876 PP

  == domain 4  score: 3.7 bits;  conditional E-value: 0.028
   EF-hand_8  34 efDtdgdGkisfeEFcv 50 
                  +D+d+d  i+++EF+ 
  KOO23219.1 221 FIDRDDDKLIDKKEFLS 237
                 58*************87 PP

  == domain 5  score: -3.5 bits;  conditional E-value: 4.9
   EF-hand_8  30 ilfrefDtdgd 40 
                 il+r  D+dgd
  KOO23219.1 548 ILMRQCDEDGD 558
                 689999***98 PP

>> SPARC_Ca_bdg  Secreted protein acidic and rich in cysteine Ca binding region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.3   0.0   1.9e-05     0.037      54     110 ..      94     148 ..      67     151 .. 0.86
   2 !    8.5   0.1    0.0012       2.4      53     111 ..     175     236 ..     149     238 .. 0.72

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 1.9e-05
  SPARC_Ca_bdg  54 epvawkFsklDtnsdkvlsksELaplraplvklehCikpflescDadkdkkislkEw 110
                     ++  F ++D+n d+ ++ +EL +      + +   ++++++ D+d+d+ i+  E+
    KOO23219.1  94 PDAHALFRQIDKNGDGAITVRELCEFFV--STDDAFARRLFKAIDTDDDGLIDIDEF 148
                   556778******************9988..7889999*******************9 PP

  == domain 2  score: 8.5 bits;  conditional E-value: 0.0012
  SPARC_Ca_bdg  53 kepvawkFsklDtnsdkvlsksELap.lraplvkl..ehCikpflescDadkdkkislkEwc 111
                    +++   F k+D ++d+ ++k+EL++ lr +l     +   +++ +  D d+dk i++kE+ 
    KOO23219.1 175 PQEIDALFAKIDLDRDGCITKRELTQyLRDTLRCPdpDGLAERLRSFIDRDDDKLIDKKEFL 236
                   4667778*****************87366666433114556777778999999999999997 PP

>> EF-hand_10  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.0   0.0     0.011        22      23      47 ..      96     120 ..      95     122 .. 0.92
   2 !   10.1   0.2   0.00028      0.56      17      43 ..     122     148 ..     120     153 .. 0.89
   3 ?   -2.3   0.0       2.1   4.3e+03      25      48 ..     180     203 ..     178     204 .. 0.83

  Alignments for each domain:
  == domain 1  score: 5.0 bits;  conditional E-value: 0.011
  EF-hand_10  23 AekLFkkcDkSksgrLegeEieeFy 47 
                 A+ LF++ Dk  +g +   E+ eF+
  KOO23219.1  96 AHALFRQIDKNGDGAITVRELCEFF 120
                 789*****************99997 PP

  == domain 2  score: 10.1 bits;  conditional E-value: 0.00028
  EF-hand_10  17 evddeYAekLFkkcDkSksgrLegeEi 43 
                   dd +A+ LFk  D+  +g ++  E+
  KOO23219.1 122 STDDAFARRLFKAIDTDDDGLIDIDEF 148
                 569*****************9998887 PP

  == domain 3  score: -2.3 bits;  conditional E-value: 2.1
  EF-hand_10  25 kLFkkcDkSksgrLegeEieeFyk 48 
                  LF k D  ++g +   E+ ++++
  KOO23219.1 180 ALFAKIDLDRDGCITKRELTQYLR 203
                 589999999999999999888765 PP

>> PARP  Poly(ADP-ribose) polymerase catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.1     6e-06     0.012      51     102 ..     426     482 ..     412     503 .. 0.80

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 6e-06
                 EEEEEE.-GGGHHHHHHH-S--S..-TTS-GGGSTTSSSEEEBSSHHHHH..GGG-- CS
        PARP  51 lLfHGs.rltnvasilsqGLria..ppeapvtGymfGkGiYfAddaskSa..nYckt 102
                 +++HG+ ++++  +i   GLr+    ++   +G+ fG GiY++ ++ ++a   Y ++
  KOO23219.1 426 VAYHGTgSIQATGGIAADGLRVGggGSVDVANGAAFGDGIYCSPNVNTAAhsMYAQP 482
                 68***96679999********96225788899************9999983345555 PP

>> Sec16_N  Vesicle coat trafficking protein Sec16 N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.6   0.4   0.00098         2     169     203 ..     124     158 ..      67     179 .. 0.78
   2 ?    9.9   0.8   0.00037      0.74     170     194 ..     212     236 ..     193     263 .. 0.83

  Alignments for each domain:
  == domain 1  score: 8.6 bits;  conditional E-value: 0.00098
     Sec16_N 169 eddLAerwkafLDdDDDlLlddeaeeanaaqqeee 203
                 +d  A r + + D DDD L+d +++  +++++ ++
  KOO23219.1 124 DDAFARRLFKAIDTDDDGLIDIDEFRLAHKTATDT 158
                 5559*****************99988776554333 PP

  == domain 2  score: 9.9 bits;  conditional E-value: 0.00037
     Sec16_N 170 ddLAerwkafLDdDDDlLlddeaee 194
                 d LAer  +f D DDD L+d  ++ 
  KOO23219.1 212 DGLAERLRSFIDRDDDKLIDKKEFL 236
                 45******************87765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (560 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       280  (0.0156172); expected 358.6 (0.02)
Passed bias filter:                      263  (0.014669); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.50u 0.25s 00:00:00.75 Elapsed: 00:00:00.38
# Mc/sec: 4429.34
//
Query:       KOO23220.1  [L=389]
Description: surface antigen -like protein, partial [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.8e-70  234.8   0.0    2.5e-36  124.4   0.0    2.1  2  LRR_5     BspA type Leucine rich repeat region (6 copies)
    2.3e-14   52.9   0.0    0.00048   19.8   0.0    5.7  6  LRR_8     Leucine rich repeat
  ------ inclusion threshold ------
       0.25   11.8   3.3    2.2e+02    2.5   0.1    5.6  6  LRR_4     Leucine Rich repeats (2 copies)


Domain annotation for each model (and alignments):
>> LRR_5  BspA type Leucine rich repeat region (6 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  124.4   0.0   4.3e-40   2.5e-36       5     127 ..     186     311 ..     182     311 .. 0.96
   2 !  116.1   0.0   1.6e-37   9.4e-34       1     111 [.     275     387 ..     275     389 .] 0.96

  Alignments for each domain:
  == domain 1  score: 124.4 bits;  conditional E-value: 4.3e-40
       LRR_5   5 syaFyn.c.nltsitipssvtsIgeyaFsnctslksitlpsslteigsyaFsncssltsitipssltsigeyaFsncsslkeitlpsnlttigssaFsn 101
                  +aF++   ++tsi +p  +tsIg+ aF++c+s++si+lp +lt+ig  aF++css+tsi +p slts+gey+F +c s+++i+lp  lt++g++aF++
  KOO23220.1 186 PHAFSYdRwSMTSIALPAGLTSIGKAAFCECSSITSIELPAGLTSIGGLAFYGCSSMTSIALPASLTSLGEYVFCGCRSMTSIELPAGLTSLGERAFYY 284
                 678877348****************************************************************************************** PP

       LRR_5 102 c.slesitipssvtkigsnaFsncssl 127
                 c sl+si++p+ +t++g+++F +cssl
  KOO23220.1 285 CsSLTSIELPAGLTSLGEYVFRGCSSL 311
                 *9**********************886 PP

  == domain 2  score: 116.1 bits;  conditional E-value: 1.6e-37
       LRR_5   1 teIgsyaFync.nltsitipssvtsIgeyaFsnctslksitlpsslteigsyaFsncssltsitipssltsigeyaFsncsslkeitlpsnlttigssa 98 
                 t++g+ aFy+c +ltsi++p  +ts+gey+F++c+sl+si+lp +lt++g+ aF +cs ltsi +p  lts+g +aFs+css+++i+lp nlt+ig+ a
  KOO23220.1 275 TSLGERAFYYCsSLTSIELPAGLTSLGEYVFRGCSSLTSIELPAGLTSLGEGAFCDCSALTSIALPARLTSLGVNAFSGCSSMTSIELPANLTSIGEGA 373
                 67899********************************************************************************************** PP

       LRR_5  99 Fsnc.slesitips 111
                 F +c s++ i +p+
  KOO23220.1 374 FDGCsSMTWIALPA 387
                 ****8898888775 PP

>> LRR_8  Leucine rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.0      0.27   1.6e+03      47      58 ..      85      96 ..      82      99 .. 0.61
   2 ?   -0.4   0.0      0.17     1e+03      37      56 ..     205     224 ..     204     226 .. 0.67
   3 !    8.1   0.0   0.00036       2.1      13      56 ..     228     270 ..     226     272 .. 0.94
   4 !   11.3   0.0   3.8e-05      0.22      13      56 ..     274     316 ..     272     318 .. 0.94
   5 !   12.3   0.0   1.8e-05      0.11      13      56 ..     297     339 ..     295     341 .. 0.94
   6 !   19.8   0.0     8e-08   0.00048      12      56 ..     342     385 ..     341     387 .. 0.95

  Alignments for each domain:
  == domain 1  score: -1.1 bits;  conditional E-value: 0.27
                T--S-.EEE--S CS
       LRR_8 47 gLpsLrsLdLsg 58
                +L  +++LdLs+
  KOO23220.1 85 NLVEVTELDLSD 96
                555666666654 PP

  == domain 2  score: -0.4 bits;  conditional E-value: 0.17
                 --GGGGGGGTT--S-.EEE- CS
       LRR_8  37 lttlspgafsgLpsLrsLdL 56 
                 lt++ + af  ++s++s+ L
  KOO23220.1 205 LTSIGKAAFCECSSITSIEL 224
                 56677777777777777665 PP

  == domain 3  score: 8.1 bits;  conditional E-value: 0.00036
                 -SEE-TTSSTT-TT--EEE--SS---GGGGGGGTT--S-.EEE- CS
       LRR_8  13 ltslddeaFkglsnLkvLdLsnNllttlspgafsgLpsLrsLdL 56 
                 lts++  aF+g+s+++++ L    lt+l + +f g++s +s+ L
  KOO23220.1 228 LTSIGGLAFYGCSSMTSIALPAS-LTSLGEYVFCGCRSMTSIEL 270
                 899******************99.****************9988 PP

  == domain 4  score: 11.3 bits;  conditional E-value: 3.8e-05
                 -SEE-TTSSTT-TT--EEE--SS---GGGGGGGTT--S-.EEE- CS
       LRR_8  13 ltslddeaFkglsnLkvLdLsnNllttlspgafsgLpsLrsLdL 56 
                 ltsl+  aF+ +s+L++++L    lt+l + +f+g++sL+s+ L
  KOO23220.1 274 LTSLGERAFYYCSSLTSIELPAG-LTSLGEYVFRGCSSLTSIEL 316
                 89*******************99.****************9988 PP

  == domain 5  score: 12.3 bits;  conditional E-value: 1.8e-05
                 -SEE-TTSSTT-TT--EEE--SS---GGGGGGGTT--S-.EEE- CS
       LRR_8  13 ltslddeaFkglsnLkvLdLsnNllttlspgafsgLpsLrsLdL 56 
                 ltsl+  +F+g+s+L++++L    lt+l +gaf ++++L+s+ L
  KOO23220.1 297 LTSLGEYVFRGCSSLTSIELPAG-LTSLGEGAFCDCSALTSIAL 339
                 89*******************99.****************9876 PP

  == domain 6  score: 19.8 bits;  conditional E-value: 8e-08
                 --SEE-TTSSTT-TT--EEE--SS---GGGGGGGTT--S-.EEE- CS
       LRR_8  12 rltslddeaFkglsnLkvLdLsnNllttlspgafsgLpsLrsLdL 56 
                 rltsl+  aF+g+s++++++L  N lt++ +gaf+g++s +++ L
  KOO23220.1 342 RLTSLGVNAFSGCSSMTSIELPAN-LTSIGEGAFDGCSSMTWIAL 385
                 79**********************.****************9876 PP

>> LRR_4  Leucine Rich repeats (2 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.1   0.0       0.2   1.2e+03      20      32 ..      84      96 ..      69     100 .. 0.73
   2 ?    0.5   0.0      0.16   9.3e+02      13      24 ..     219     230 ..     215     269 .. 0.74
   3 ?   -0.4   0.0      0.29   1.7e+03      12      25 ..     264     277 ..     256     279 .. 0.81
   4 ?    2.5   0.1     0.037   2.2e+02       9      25 ..     286     300 ..     284     316 .. 0.67
   5 ?    1.4   0.0     0.077   4.6e+02      12      25 ..     310     323 ..     303     325 .. 0.82
   6 ?    0.0   0.0      0.21   1.3e+03      14      30 ..     344     362 ..     331     371 .. 0.58

  Alignments for each domain:
  == domain 1  score: 0.1 bits;  conditional E-value: 0.2
                HH-TT--EEE-.- CS
       LRR_4 20 eklpnLkeLdLsg 32
                ++l   +eLdLs+
  KOO23220.1 84 SNLVEVTELDLSD 96
                3588888888865 PP

  == domain 2  score: 0.5 bits;  conditional E-value: 0.16
                 --E-S-HHH-TT CS
       LRR_4  13 ltdiplleklpn 24 
                 +t+i+l+++l++
  KOO23220.1 219 ITSIELPAGLTS 230
                 677777666665 PP

  == domain 3  score: -0.4 bits;  conditional E-value: 0.29
                 ---E-S-HHH-TT- CS
       LRR_4  12 qltdiplleklpnL 25 
                  +t+i+l+++l++L
  KOO23220.1 264 SMTSIELPAGLTSL 277
                 48999**9999998 PP

  == domain 4  score: 2.5 bits;  conditional E-value: 0.037
                 -SS---E-S-HHH-TT- CS
       LRR_4   9 snNqltdiplleklpnL 25 
                 s+  lt+i+l+++l++L
  KOO23220.1 286 SS--LTSIELPAGLTSL 300
                 55..7777777777776 PP

  == domain 5  score: 1.4 bits;  conditional E-value: 0.077
                 ---E-S-HHH-TT- CS
       LRR_4  12 qltdiplleklpnL 25 
                  lt+i+l+++l++L
  KOO23220.1 310 SLTSIELPAGLTSL 323
                 49999999999998 PP

  == domain 6  score: 0.0 bits;  conditional E-value: 0.21
                 -E-S-..HHH-TT--EEE- CS
       LRR_4  14 tdipl..leklpnLkeLdL 30 
                 t+++   ++++ +++++ L
  KOO23220.1 344 TSLGVnaFSGCSSMTSIEL 362
                 4444444445555555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (389 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       233  (0.0129957); expected 358.6 (0.02)
Passed bias filter:                      185  (0.0103185); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.48u 0.24s 00:00:00.72 Elapsed: 00:00:00.41
# Mc/sec: 2853.84
//
Query:       KOO23221.1  [L=186]
Description: hypothetical protein Ctob_008210, partial [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.2e-11   43.1   0.5    5.8e-08   33.1   0.0    2.8  3  EF-hand_7  EF-hand domain pair
    3.1e-07   29.5   1.6     0.0064   16.0   0.0    2.8  3  EF-hand_1  EF hand
    1.4e-05   24.3   2.6     0.0033   16.8   0.0    2.8  3  EF-hand_5  EF hand
    3.7e-05   23.5   0.2       0.34   10.8   0.0    2.7  3  EF-hand_8  EF-hand domain pair
    0.00025   20.7   0.8       0.09   12.8   0.0    2.7  2  EF-hand_6  EF-hand domain


Domain annotation for each model (and alignments):
>> EF-hand_7  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.1   6.5e-06     0.023      14      70 ..      15      73 ..      14      74 .. 0.72
   2 !   33.1   0.0   1.6e-11   5.8e-08       6      69 ..      51     113 ..      46     115 .. 0.84
   3 ?    2.8   0.5     0.046   1.7e+02      36      62 ..     120     152 ..     113     153 .. 0.82

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 6.5e-06
   EF-hand_7 14 dgdgyldkeellrllrkifqgagegsklsd..eelellfkefDtdkdGvisfdEFlkly 70
                +g+  +++++++++lr       +++ + d  ++   +fk fD +kd  +++ E+ +++
  KOO23221.1 15 HGSRAMSEADYENALRTSGLEVVRDVTIKDdlKAAAIIFKRFDANKDEHLNLKELTAWV 73
                667778888888888873222233333333556699******************99886 PP

  == domain 2  score: 33.1 bits;  conditional E-value: 1.6e-11
   EF-hand_7   6 eaFkelDtdgdgyldkeellrllrkifqgagegsklsdeelellfkefDtdkdGvisfdEFlkl 69 
                  +Fk +D ++d +l+  el   ++  + g +  +++++++ el++  +Dt+ dG+is dE+ ++
  KOO23221.1  51 IIFKRFDANKDEHLNLKELTAWVET-DGGVEGSKSSPRKQAELMMIGVDTNEDGRISIDEYTTF 113
                 57******************88885.44436666667799*********************987 PP

  == domain 3  score: 2.8 bits;  conditional E-value: 0.046
   EF-hand_7  36 gegsklsd......eelellfkefDtdkdGvis 62 
                 +eg++++d      +el++ +k + + k  +is
  KOO23221.1 120 REGDPSDDptwdlkQELREEMKRMEKAKKQRIS 152
                 6777766688888899***********999997 PP

>> EF-hand_1  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.0   1.8e-06    0.0064       5      26 ..      52      73 ..      50      75 .. 0.92
   2 !   11.8   0.0   3.8e-05      0.14       9      24 ..      97     112 ..      90     115 .. 0.85
   3 ?   -2.8   0.1       1.8   6.3e+03      20      28 ..     134     142 ..     133     143 .. 0.60

  Alignments for each domain:
  == domain 1  score: 16.0 bits;  conditional E-value: 1.8e-06
                HHHHHTTTSSSEEEHHHHHHHH CS
   EF-hand_1  5 iFrefDkDgdGkIdfeEfkell 26
                iF+ fD ++d +++++E+ +++
  KOO23221.1 52 IFKRFDANKDEHLNLKELTAWV 73
                8*****************9987 PP

  == domain 2  score: 11.8 bits;  conditional E-value: 3.8e-05
                 HTTTSSSEEEHHHHHH CS
   EF-hand_1   9 fDkDgdGkIdfeEfke 24 
                 +D++ dG+I+++E+ +
  KOO23221.1  97 VDTNEDGRISIDEYTT 112
                 8************876 PP

  == domain 3  score: -2.8 bits;  conditional E-value: 1.8
                 HHHHHHHHH CS
   EF-hand_1  20 eEfkellkk 28 
                 +E++e +k+
  KOO23221.1 134 QELREEMKR 142
                 677766665 PP

>> EF-hand_5  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.0   0.0    0.0012       4.3       4      13 ..      52      61 ..      49      71 .. 0.84
   2 !   16.8   0.0   9.2e-07    0.0033       8      24 ..      97     113 ..      97     114 .. 0.91
   3 ?   -2.6   0.2       1.3   4.8e+03      18      23 ..     133     138 ..     133     142 .. 0.66

  Alignments for each domain:
  == domain 1  score: 7.0 bits;  conditional E-value: 0.0012
                HHHHH-SS-S CS
   EF-hand_5  4 tFqaiDlNgD 13
                 F+++D+N+D
  KOO23221.1 52 IFKRFDANKD 61
                5********9 PP

  == domain 2  score: 16.8 bits;  conditional E-value: 9.2e-07
                 H-SS-SSCE-HHHHHHH CS
   EF-hand_5   8 iDlNgDGkIskeELktl 24 
                 +D+N DG+Is++E  t+
  KOO23221.1  97 VDTNEDGRISIDEYTTF 113
                 6************9887 PP

  == domain 3  score: -2.6 bits;  conditional E-value: 1.3
                 HHHHHH CS
   EF-hand_5  18 keELkt 23 
                 k+EL++
  KOO23221.1 133 KQELRE 138
                 578876 PP

>> EF-hand_8  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.8   0.0   9.6e-05      0.34      28      48 ..      49      69 ..      44      75 .. 0.88
   2 !    9.8   0.0   0.00019      0.68      27      48 ..      89     110 ..      80     115 .. 0.86
   3 ?   -2.0   0.0      0.92   3.3e+03      20      20 ..     149     149 ..     135     175 .. 0.52

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 9.6e-05
   EF-hand_8 28 vdilfrefDtdgdGkisfeEF 48
                + i+f++fD ++d +++++E 
  KOO23221.1 49 AAIIFKRFDANKDEHLNLKEL 69
                679****************96 PP

  == domain 2  score: 9.8 bits;  conditional E-value: 0.00019
   EF-hand_8  27 evdilfrefDtdgdGkisfeEF 48 
                 +++ ++  +Dt++dG+is +E+
  KOO23221.1  89 QAELMMIGVDTNEDGRISIDEY 110
                 567788899***********98 PP

  == domain 3  score: -2.0 bits;  conditional E-value: 0.92
   EF-hand_8  20 k 20 
                 +
  KOO23221.1 149 Q 149
                 2 PP

>> EF-hand_6  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.8   0.0   2.5e-05      0.09       5      28 ..      52      75 ..      50      81 .. 0.89
   2 !    5.5   0.2    0.0052        19      10      21 ..      98     109 ..      96     113 .. 0.92

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 2.5e-05
   EF-hand_6  5 aFklfDkdgdGkidaeElrkalrk 28
                +Fk fD ++d +++ +El ++  +
  KOO23221.1 52 IFKRFDANKDEHLNLKELTAWVET 75
                7*****************998775 PP

  == domain 2  score: 5.5 bits;  conditional E-value: 0.0052
   EF-hand_6  10 DkdgdGkidaeE 21 
                 D++ dG i+++E
  KOO23221.1  98 DTNEDGRISIDE 109
                 9*********99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (186 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       882  (0.049194); expected 358.6 (0.02)
Passed bias filter:                      536  (0.0298957); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.46u 0.28s 00:00:00.74 Elapsed: 00:00:00.46
# Mc/sec: 1227.46
//
Query:       KOO23222.1  [L=749]
Description: aldo keto reductase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    6.4e-14   51.8   0.0    5.2e-12   45.6   0.0    2.3  1  Aldo_ket_red  Aldo/keto reductase family
  ------ inclusion threshold ------
       0.48   10.8   4.5        3.5    8.0   0.6    2.4  2  TSC22         TSC-22/dip/bun family
        1.2    9.3   6.9        2.8    8.2   6.9    1.6  1  JIP_LZII      JNK-interacting protein  leucine zipper II


Domain annotation for each model (and alignments):
>> Aldo_ket_red  Aldo/keto reductase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.6   0.0   8.7e-16   5.2e-12      26     291 ..     481     731 ..     474     734 .. 0.91

  Alignments for each domain:
  == domain 1  score: 45.6 bits;  conditional E-value: 8.7e-16
                   HHHHTT--EEE--TT-TTTHHHHHHHHHHHH-TTTGGG-EEEEEE.......--SSSTTSSSS-HHHHHHHHHHHHHHHT-S-EEEEEE-S--TTS- CS
  Aldo_ket_red  26 raleaGinffDtAevYgkgqseellGealkksrkkreeviiatKv.......dlrdaeiksglskeniresleeslkrLgtdyvDllllHrpdpslp 115
                   r + aG +++ tA  Y   ++  ++G+a+++   +r +v+i+          +      +++++ +  + +++  l  Lg+ yvDl+ lH p  +  
    KOO23222.1 481 RNFAAGLTHVHTAFDY---YNLPEIGRAIAQ--YPRANVFISAMTspcfhasPPVRNVTDPDGCYNLTTLEIDSVLHDLGVTYVDLIMLHGPSEAFG 572
                   55789********888...8***********..**********99999999988888899999999999**************************99 PP

                   ............HHHHHHHHHHHHHTTSEEEEEEES--HHHHHHHHHTTT--.EEEEE-B-BTT-HHHHTTHHHHHHHTT-EEEEBSTTGGGTTGTT CS
  Aldo_ket_red 116 ...........sieevldaleelvkeGkiraiGvSnfsveqlekakkkkkvk.ivavqveynllreleeegllelckkkgvpliaysplggGlltgk 200
                                + +++a +    + k raiGvSnf +  le + k ++ + ++++q + ++    ++ +l ++ +++g+ + ay+pl+gG     
    KOO23222.1 573 hegpcsdfscpLNAAQWRAYAAALAANKTRAIGVSNFCISCLECLAKMSVGPvPATNQLQLHVGMGPDPGKLMSYNAAHGIVVQAYEPLAGGDVA-- 667
                   99******9998899****************************885555555589999999999999999**********************999.. PP

                   TSS---SSSCCC-------TS-HHHHHHHHHHHHHHHHTT--HHHHHHHHHTTSTT-SEEEE--SSHHHHHHHHGGGG-.---HHHHHHHHH CS
  Aldo_ket_red 201 yqseedkedkeprkdlkrdertsknldaaeelselakehgvslaqlalryalsqpavgivipgasnieqlednldalel.klseeevaelde 291
                                             + +    +++ eh++s aq+ l ++l  ++v ++++ + ++++l++ l+ l+   ls  + a+ld 
    KOO23222.1 668 --------------------------TNCTVCAQVGTEHNKSAAQVGLLWVL--DRVPSLVVETGSQDHLDQDLAILDGwSLSLGDRAALDG 731
                   ..........................77889999******************..*******************9999544888877777776 PP

>> TSC22  TSC-22/dip/bun family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.8   0.2     0.012        73      16      45 ..     236     265 ..     235     268 .. 0.90
   2 ?    8.0   0.6   0.00059       3.5      24      50 ..     272     300 ..     271     306 .. 0.77

  Alignments for each domain:
  == domain 1  score: 3.8 bits;  conditional E-value: 0.012
       TSC22  16 VevLkekIkeLeernseleeENslLkalas 45 
                 +e L     +L+ + ++l eEN  Lk+++ 
  KOO23222.1 236 IEKLHRDLGDLIVDKQRLSEENLRLKSILK 265
                 79999999******************9875 PP

  == domain 2  score: 8.0 bits;  conditional E-value: 0.00059
       TSC22  24 keLeernseleeENslLkala..speqle 50 
                 keL+er++ele E + Lk+ a  ++eql+
  KOO23222.1 272 KELLERVAELEVEVTKLKREAavNEEQLA 300
                 79****************87611456665 PP

>> JIP_LZII  JNK-interacting protein  leucine zipper II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.2   6.9   0.00047       2.8       9      70 ..     252     314 ..     248     315 .. 0.85

  Alignments for each domain:
  == domain 1  score: 8.2 bits;  conditional E-value: 0.00047
    JIP_LZII   9 nLikENteLletknaLnvvkddLIarvdeLtsereiLreEleslqkak.erlesrikelEeel 70 
                  L +EN +L+      +  k++L++rv eL  e + L+ E    ++++ ++ +s i++lE el
  KOO23222.1 252 RLSEENLRLKSILKSSDAPKKELLERVAELEVEVTKLKREAAVNEEQLaTSYQSVIRQLEVEL 314
                 6789999999999999************************99877666155666789999887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (749 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1101  (0.0614089); expected 358.6 (0.02)
Passed bias filter:                      580  (0.0323498); expected 358.6 (0.02)
Passed Vit filter:                        67  (0.00373696); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.72u 0.29s 00:00:01.01 Elapsed: 00:00:00.48
# Mc/sec: 4739.44
//
Query:       KOO23223.1  [L=1676]
Description: adenylate guanylate cyclase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.2e-22   79.6   0.3      1e-09   38.3   0.2    2.8  2  Guanylate_cyc  Adenylate and Guanylate cyclase catalytic doma
    2.6e-08   34.4   0.2    2.6e-08   34.4   0.2    2.8  2  AAA_16         AAA ATPase domain
    0.00015   22.0   0.4     0.0042   17.3   0.4    2.7  1  AAA_22         AAA domain
      0.001   19.0  12.7       0.29   11.4   0.0    5.8  5  TPR_2          Tetratricopeptide repeat
  ------ inclusion threshold ------
      0.015   15.8   0.0      0.039   14.5   0.0    1.7  1  ABC_tran       ABC transporter
      0.085   13.1   1.2       0.76   10.1   0.0    3.2  3  ANAPC3         Anaphase-promoting complex, cyclosome, subunit
       0.11   12.5   0.0       0.29   11.1   0.0    1.7  1  TsaE           Threonylcarbamoyl adenosine biosynthesis prote
       0.11   12.5   0.0       0.33   11.0   0.0    1.8  1  AAA_5          AAA domain (dynein-related subfamily)
       0.13   11.5   0.0       0.78    8.9   0.0    2.1  2  NB-ARC         NB-ARC domain
       0.18   12.1   5.6        4.2    7.7   0.0    3.2  3  AAA_19         AAA domain
       0.27   11.8   8.1        4.9    7.7   0.9    4.3  4  TPR_19         Tetratricopeptide repeat
       0.59   10.9  12.4        2.1    9.2   0.1    5.9  3  TPR_4          Tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> Guanylate_cyc  Adenylate and Guanylate cyclase catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.9   0.0   8.7e-13   1.3e-09       8     154 ..     108     265 ..     103     276 .. 0.84
   2 !   38.3   0.2     7e-13     1e-09      54     178 ..     395     516 ..     344     520 .. 0.68

  Alignments for each domain:
  == domain 1  score: 37.9 bits;  conditional E-value: 8.7e-13
  Guanylate_cyc   8 evtilFadIvgftalssahs.......pievvklLnelyarfdelldekkvykvktiGdaymvvsglp...eekaahaaklaelaLdmlealeeva 93 
                    + ++lF+dI gft+l ++         ++ + +++n  ++++ +++++  +  +k+ Gda+m +  ++   e+ ++ +++++ ++L+ l++l++  
     KOO23223.1 108 NAAVLFSDISGFTKLTNQLLkergnegAEILNSIINRFFEELINMVTRFSGDVIKFGGDAIMSIWSSNtcgESLETLTHRAVACGLEQLQQLNNWD 203
                    578*************9976778445333333445555555556667777************99988877788888999***************** PP

  Guanylate_cyc  94 veskeglkvrvGihtGpvvagviG.akkprydvwGntvnlAsrmestgkagkiqvseetyel 154
                    +e+  +l++  G+  G v    +G   ++++ v G++    s  e+ +++g+  vs+e+  l
     KOO23223.1 204 TEEGVMLQLHLGLGAGAVQGVDLGnFLRREFVVAGHALRQLSDAEQQAETGQLCVSPEAWVL 265
                    *****************998888977899**************************9987655 PP

  == domain 2  score: 38.3 bits;  conditional E-value: 7e-13
  Guanylate_cyc  54 vktiGdaymvvsglp.eekaahaaklaelaLdmlealeevaveskeglkvrvGihtGpvvagviG.akkprydvwGntvnlAsrmestgkagkiqv 147
                    +   G +  +++glp     ++ a+++++aL + ++++ ++      lk  +Gi tG+v++g +G  ++ +y+ +G  vn+A+r+   +++ ++ v
     KOO23223.1 395 IDDKGTCVKITFGLPpLYFSDDPARAIRCALLIRDQIRPMR------LKANIGITTGTVFIGYVGsSSRGEYTEYGVMVNMAARFMGQAVN-EVLV 483
                    44555566666666643334444555566666666555554......5569**************99999****************99985.799* PP

  Guanylate_cyc 148 seetyellk.eeqfeltergevevkG.kgklet 178
                     ++t++ +  +++f+++e+ +v +kG +++++ 
     KOO23223.1 484 NQTTHDKALvTDKFDFDELPKVVMKGfEDPVIK 516
                    99999766559***************6666655 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.4   0.2   1.7e-11   2.6e-08       3     160 ..     560     780 ..     558     788 .. 0.70
   2 ?   -3.1   0.7       6.1   9.1e+03     121     121 ..    1165    1165 ..    1094    1263 .. 0.46

  Alignments for each domain:
  == domain 1  score: 34.4 bits;  conditional E-value: 1.7e-11
      AAA_16   3 vGReeeleqLlsalervrsgrp.elvllsGesGvGKsslvrellralekdg.giflrgkcdqlesaipysa.laqalareellrqllde.......... 88 
                 vG +  ++  ++al+  +++r+  +v+l+Ge GvGK++l++e+  +l+ ++ ++ +++ +++  + + y+  + q+l   + l  ll +          
  KOO23223.1 560 VGQQSLMHSCEQALRGFHKSREgFVVVLRGETGVGKTRLIEEIVASLCPQYdILPIKTAAQRD-EVADYLSiWRQVL-P-Q-LPRLLGHvdaveavgrr 654
                 555555566667777555555547899***********************7344466666666.5577866366666.3.4.44444452333333333 PP

      AAA_16  89 ....aesaeleawrekleeala...............................................................avpelagaea.... 116
                                      a                                                               + +e +   +    
  KOO23223.1 655 cdggR----------------AvggsgqpprlsatldgkerhgydwqgqaaaemmemeqlerfkkhegllntvidcgftmsdetlSLSEES---Rqalt 734
                 33330................2336666666666666777799999999999999999********************9988666333333...14447 PP

      AAA_16 117 .srllellkrll.allsrderplvlvlDdlqwadeaslqllaaLlr 160
                  + l++ l ++l +l ++ ++  +l+++d+q  d+ s++lla+ ++
  KOO23223.1 735 rHMLAHMLEAALgDLEAKLSKRALLIIEDAQAMDSVSWTLLAHVAE 780
                 5555555555557777777888*******************98765 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 6.1
      AAA_16  121 e 121 
                  e
  KOO23223.1 1165 E 1165
                  1 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   0.4   2.8e-06    0.0042       8     110 ..     585     776 ..     578     796 .. 0.76

  Alignments for each domain:
  == domain 1  score: 17.3 bits;  conditional E-value: 2.8e-06
      AAA_22   8 lvvtGesGtGKTtllrrlleqldeeakaee.....erpevvfvtlpsstsskdllrellralglelka............................... 70 
                 +v+ Ge+G+GKT+l+++++ +l+ ++++       +r+ev+        +  +++r++l +l + l +                               
  KOO23223.1 585 VVLRGETGVGKTRLIEEIVASLCPQYDILPiktaaQRDEVA--------DYLSIWRQVLPQLPRLLGHvdaveavgrrcdggravggsgqpprlsatld 675
                 6788******************9765555555555444444........44444444444444333334444555555555****************** PP

      AAA_22  71 ..................................................erlsseellealeqalrarav.........ielliiDEaqhlr..seea 108
                                                                   ++ s+++l +++  ++ ++a          ++llii++aq ++  s ++
  KOO23223.1 676 gkerhgydwqgqaaaemmemeqlerfkkhegllntvidcgftmsdetlslSEESRQALTRHMLAHMLEAALgdleaklskRALLIIEDAQAMDsvSWTL 774
                 *********************************************9999988888888877777777777788889999*************5443433 PP

      AAA_22 109 le 110
                 l 
  KOO23223.1 775 LA 776
                 33 PP

>> TPR_2  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.0   0.1     0.021        32       1      29 [.    1137    1165 ..    1137    1168 .. 0.90
   2 ?   -1.8   0.1       3.2   4.7e+03       1      16 [.    1216    1231 ..    1216    1233 .. 0.80
   3 ?    1.3   0.3      0.32   4.8e+02       7      27 ..    1324    1344 ..    1319    1346 .. 0.88
   4 !   11.4   0.0   0.00019      0.29       4      28 ..    1361    1385 ..    1358    1388 .. 0.88
   5 ?    4.7   0.9     0.027        40       4      28 ..    1573    1597 ..    1570    1601 .. 0.86

  Alignments for each domain:
  == domain 1  score: 5.0 bits;  conditional E-value: 0.021
       TPR_2    1 aealynlGlayyklgdyeeAleafekAle 29  
                  a a+ +l++a+++ g++ eA+e    Ale
  KOO23223.1 1137 AFANAMLAEAHLAVGELPEAKEVIMNALE 1165
                  578899****************9988887 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 3.2
       TPR_2    1 aealynlGlayyklgd 16  
                  a+++ nlG+ +y l +
  KOO23223.1 1216 ARLYENLGRTAYLLEE 1231
                  6789999999998876 PP

  == domain 3  score: 1.3 bits;  conditional E-value: 0.32
       TPR_2    7 lGlayyklgdyeeAleafekA 27  
                   G+++++  ++++A++a+++A
  KOO23223.1 1324 FGQSAMREANWKRAEAALRAA 1344
                  5999**************998 PP

  == domain 4  score: 11.4 bits;  conditional E-value: 0.00019
       TPR_2    4 lynlGlayyklgdyeeAleafekAl 28  
                   ++lGl++y +g++eeA++ f  A 
  KOO23223.1 1361 SHELGLVLYMSGQLEEAHRVFTDAR 1385
                  578******************9886 PP

  == domain 5  score: 4.7 bits;  conditional E-value: 0.027
       TPR_2    4 lynlGlayyklgdyeeAleafekAl 28  
                  l + G++ +  g+ +eAl++f +A 
  KOO23223.1 1573 LLYEGRLRLLYGRKAEALDYFARAR 1597
                  66789999999************96 PP

>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.5   0.0   2.6e-05     0.039       9     124 ..     580     738 ..     577     742 .. 0.79

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 2.6e-05
                 ETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGGB-HHHCCHCEEEE-SS--S-TTSBHHHH............................ CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx............................ RF
    ABC_tran   9 kegekvaivGenGaGKStLlkllagllkpteGeilldgkdlkeqeleslrkeigvlpqepqlfpeltvren............................ 79 
                 +eg +v++ Ge+G GK+ L++ +   l p+ + + ++ +  +++    l+   +vlpq p+l  ++ + e                             
  KOO23223.1 580 REGFVVVLRGETGVGKTRLIEEIVASLCPQYDILPIKTAAQRDEVADYLSIWRQVLPQLPRLLGHVDAVEAvgrrcdggravggsgqpprlsatldgke 678
                 57889*****************************99988888888888899999999999999999988888999***********9999999999999 PP

                 ...........HHHTCHHHHHHHSTTGGTTCBGESTTS....GGS-HHHHHHHHHHHHHH CS
                 ...........xxxxxxxxxxxxxxxxxxxxxxxxxxx....xxxxxxxxxxxxxxxxxx RF
    ABC_tran  80 ...........esdeeiekalsklglkelkdtvvkssp....ssLSgGqkqrvalarall 124
                            ++  e+e++ +  + ++l +tv++ +     ++LS  + +r al r +l
  KOO23223.1 679 rhgydwqgqaaAEMMEMEQLERFKKHEGLLNTVIDCGFtmsdETLSLSEESRQALTRHML 738
                 997765554432222233333333333366677765556666999999999999998887 PP

>> ANAPC3  Anaphase-promoting complex, cyclosome, subunit 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.0       2.2   3.4e+03      36      71 ..     751     784 ..     731     786 .. 0.82
   2 ?   -1.4   0.1       1.9   2.9e+03      13      46 ..    1125    1160 ..    1100    1166 .. 0.62
   3 ?   10.1   0.0   0.00051      0.76       6      79 ..    1342    1421 ..    1307    1423 .. 0.80

  Alignments for each domain:
  == domain 1  score: -1.6 bits;  conditional E-value: 2.2
                 TT-HHHHHHHHHCTSHHHC-HHHHHHHHHHHHHTT- CS
      ANAPC3  36 ngqykrAyellrkaklnskslgcrylfAqcllkLkk 71 
                 ++  krA+ ++++a  +  +  ++ l+A+++ k+++
  KOO23223.1 751 AKLSKRALLIIEDA--QAMDSVSWTLLAHVAEKIGN 784
                 55679999999999..77888899999999999887 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 1.9
                  HHHH...HHH--HHHHHHHHHHHHHTT-HHHHHHHH CS
      ANAPC3   13 erlla..aetespedayllAlclylngqykrAyell 46  
                  erl+a  +et+ + +  +lA++++  g+  +A e++
  KOO23223.1 1125 ERLQAsnTETQQAFANAMLAEAHLAVGELPEAKEVI 1160
                  344432244444444666788888888877777665 PP

  == domain 3  score: 10.1 bits;  conditional E-value: 0.00051
                  HHHHHHHHHHH.HHH--HHHHHHHHHHHHHTT-HHHHHHHHHCT.SHHHC-H....HHHHHHHHHH..HHTT-HHHHHHHH CS
      ANAPC3    6 knAiflaerllaaetespedayllAlclylngqykrAyellrka.klnsksl....gcrylfAqcl..lkLkkyeeAiaaL 79  
                  + A   ++ ++ + ++ +e ++ l+l+ly +gq ++A++++ +a ++    +     c+++ + c   l  ++ +eA+ +L
  KOO23223.1 1342 RAAAVAGDAVY-SGRRGEEVSHELGLVLYMSGQLEEAHRVFTDArETCAARHdvpmLCLLTVGLCVplLSFGRADEALELL 1421
                  56677778888.9999999*********************99995433333346667777777775334557777777766 PP

>> TsaE  Threonylcarbamoyl adenosine biosynthesis protein TsaE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0    0.0002      0.29      18      43 ..     580     606 ..     562     615 .. 0.74

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.0002
                 H.TEEEEEEESTTSSHHHHHHHHHHHT CS
        TsaE  18 l.gdvilLeGdLGaGKTtlvrglakal 43 
                   g v++L+G+ G+GKT l+ +++++l
  KOO23223.1 580 ReGFVVVLRGETGVGKTRLIEEIVASL 606
                 24568******************9987 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   0.00022      0.33       2      42 ..     585     625 ..     584     633 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00022
                 EEEE--SSSSHHHHHHHGGGGBS--EEEEE--TT--HHHHH CS
       AAA_5   2 vlLvGppGtgKselaerlaaalnreveyvqltrdtteedlk 42 
                 v+L G++G+gK++l+e++ a l+ ++ +  ++   +++++ 
  KOO23223.1 585 VVLRGETGVGKTRLIEEIVASLCPQYDILPIKTAAQRDEVA 625
                 799******************99988888888888877775 PP

>> NB-ARC  NB-ARC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.9   0.0   0.00052      0.78      16      52 ..     578     611 ..     563     642 .. 0.79
   2 ?   -1.2   0.0      0.64   9.5e+02     154     215 ..     854     910 ..     849     930 .. 0.79

  Alignments for each domain:
  == domain 1  score: 8.9 bits;  conditional E-value: 0.00052
                 TTSCSEEEEEEESTTSSHHHHHHHHCCSHCCCCCCBT CS
      NB-ARC  16 delqslvvalvGmgGvGKttlakqilnksdevegrFd 52 
                 ++ + +vv l G  GvGKt l+++i+ +   +  ++d
  KOO23223.1 578 KSREGFVVVLRGETGVGKTRLIEEIVAS---LCPQYD 611
                 456679*******************987...555666 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 0.64
                 EEESS--HHHHHHHHHHCCTS-GGCHH..CHHHHHHHHHHCTT-HHHHHHHHHHHC-TCSCC CS
      NB-ARC 154 ievelLekdeawellenkvfekkleekesleevakeivekckGlPlalkvlggllstkktve 215
                 +ev+ L      ell++ v ++ +       +v + + ++  G+Pl  + l+ ++ +++++ 
  KOO23223.1 854 HEVRPLDTRYVHELLCHCVGAQMVV-----DNVVQAVFHRTLGNPLYCIELATTMVQQQVIT 910
                 6677777777777888887777665.....569999999999*****999999999887654 PP

>> AAA_19  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.7   0.0    0.0028       4.2      11      36 ..     583     608 ..     572     624 .. 0.82
   2 ?    5.4   0.5     0.014        21      68     128 ..     717     781 ..     684     790 .. 0.63
   3 ?   -2.0   0.3       2.7     4e+03      37     115 ..    1083    1157 ..    1076    1171 .. 0.49

  Alignments for each domain:
  == domain 1  score: 7.7 bits;  conditional E-value: 0.0028
      AAA_19  11 kvllvtaGpGtGKTrvlkhivallve 36 
                  v+++ +  G GKTr++++iva l  
  KOO23223.1 583 FVVVLRGETGVGKTRLIEEIVASLCP 608
                 46788899*************99865 PP

  == domain 2  score: 5.4 bits;  conditional E-value: 0.014
      AAA_19  68 e..............atTiHrlalldfddlltealelleeaeeekklqeeellivDEfqdvdelqyrLlkallge 128
                                a T H la +     +  al+ l     e kl +++lli+  +q +d + ++Ll  ++++
  KOO23223.1 717 TmsdetlslseesrqALTRHMLAHML----E-AALGDL-----EAKLSKRALLIIEDAQAMDSVSWTLLAHVAEK 781
                 04444444444466688888884442....2.223333.....45787888******************999854 PP

  == domain 3  score: -2.0 bits;  conditional E-value: 2.7
      AAA_19   37 lggvkpeeillvaftgrAakelrerlaalgae.atTiHrlalldfddlltealelle......eaeeekklqeeellivDEfqdvd 115 
                  ++g + + i +v++  rAak   e+   + +e +  i +   l + +      e l+      +++  + + +e++l v E  + +
  KOO23223.1 1083 MTGAD-AAISAVSYLDRAAKAALEAS--MHREaIVLIKKE--LRVLR------ERLQasntetQQAFANAMLAEAHLAVGELPEAK 1157
                  44444.66777777777777766666..333312222211..11111......111122222244455555566677666666655 PP

>> TPR_19  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.7   0.9    0.0033       4.9      21      48 ..    1133    1160 ..    1103    1168 .. 0.67
   2 ?    5.6   0.0     0.016        23       1      57 [.    1368    1430 ..    1368    1435 .. 0.71
   3 ?   -3.2   0.1       8.7   1.3e+04       6      20 ..    1585    1599 ..    1580    1604 .. 0.69
   4 ?   -3.3   0.1       9.3   1.4e+04      42      60 ..    1643    1661 ..    1641    1664 .. 0.83

  Alignments for each domain:
  == domain 1  score: 7.7 bits;  conditional E-value: 0.0033
      TPR_19   21 dpknaearllLAeallalgqldeAealL 48  
                  + ++a a + LAea+la g+l eA++++
  KOO23223.1 1133 ETQQAFANAMLAEAHLAVGELPEAKEVI 1160
                  44566677789**************986 PP

  == domain 2  score: 5.6 bits;  conditional E-value: 0.016
      TPR_19    1 llaegdyaeAlalleqalqedpknaearl......lLAeallalgqldeAealLdalpeedpd 57  
                  l+++g+++eA++ ++ a +  +   ++ +      +L+  ll+ g+ deA +lL   ++  p+
  KOO23223.1 1368 LYMSGQLEEAHRVFTDARETCAARHDVPMlclltvGLCVPLLSFGRADEALELLHVMLDTMPQ 1430
                  567888889999998887664443333222334567899999999999999999988877665 PP

  == domain 3  score: -3.2 bits;  conditional E-value: 8.7
      TPR_19    6 dyaeAlalleqalqe 20  
                  + aeAl+++++a +e
  KOO23223.1 1585 RKAEALDYFARARDE 1599
                  447888888887665 PP

  == domain 4  score: -3.3 bits;  conditional E-value: 9.3
      TPR_19   42 deAealLdalpeedpddar 60  
                  + A+++L +lpe  +d+ar
  KOO23223.1 1643 TRARDALLKLPEGLRDSAR 1661
                  689********99999776 PP

>> TPR_4  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.2   0.1    0.0014       2.1       5      22 ..    1141    1158 ..    1137    1160 .. 0.88
   2 ?    3.7   0.0     0.088   1.3e+02       6      23 ..    1363    1380 ..    1360    1381 .. 0.89
   3 ?    2.1   0.0      0.27     4e+02      15      24 ..    1412    1421 ..    1401    1422 .. 0.86

  Alignments for each domain:
  == domain 1  score: 9.2 bits;  conditional E-value: 0.0014
       TPR_4    5 laLArallalGdldeAra 22  
                  ++LA+a+la G+l+eA +
  KOO23223.1 1141 AMLAEAHLAVGELPEAKE 1158
                  68**************76 PP

  == domain 2  score: 3.7 bits;  conditional E-value: 0.088
       TPR_4    6 aLArallalGdldeAral 23  
                   L+ +l+  G+l+eA ++
  KOO23223.1 1363 ELGLVLYMSGQLEEAHRV 1380
                  599************997 PP

  == domain 3  score: 2.1 bits;  conditional E-value: 0.27
       TPR_4   15 GdldeArall 24  
                  G++deA++ll
  KOO23223.1 1412 GRADEALELL 1421
                  9*******98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1676 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       741  (0.0413297); expected 358.6 (0.02)
Passed bias filter:                      599  (0.0334096); expected 358.6 (0.02)
Passed Vit filter:                        75  (0.00418317); expected 17.9 (0.001)
Passed Fwd filter:                        13  (0.000725082); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 1.03u 0.31s 00:00:01.34 Elapsed: 00:00:00.47
# Mc/sec: 10630.78
//
Query:       KOO23224.1  [L=348]
Description: myb DNA binding protein transcription factor-like protein, partial [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    7.2e-27   93.3   6.5    7.1e-15   54.9   0.9    2.5  2  Myb_DNA-binding  Myb-like DNA-binding domain
    3.4e-22   78.5   9.0      6e-17   61.7   1.4    2.3  2  Myb_DNA-bind_6   Myb-like DNA-binding domain
    0.00066   19.5   1.3     0.0048   16.8   0.6    2.1  2  Myb_DNA-bind_7   Myb DNA-binding like
     0.0019   18.2   0.2      0.032   14.3   0.0    2.2  2  SLIDE            SLIDE
      0.005   17.0   3.2       0.11   12.7   1.0    2.2  2  SANT_DAMP1_like  SANT/Myb-like domain of DAMP1
  ------ inclusion threshold ------
       0.06   13.7   6.2          1    9.8   1.0    2.4  2  MADF_DNA_bdg     Alcohol dehydrogenase transcription factor M
        1.8    9.0   6.4        5.3    7.5   0.6    2.4  2  Myb_DNA-bind_4   Myb/SANT-like DNA-binding domain


Domain annotation for each model (and alignments):
>> Myb_DNA-binding  Myb-like DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.9   0.9   2.8e-18   7.1e-15       1      46 []      36      82 ..      36      82 .. 0.97
   2 !   41.2   0.5   5.4e-14   1.4e-10       1      44 [.      88     132 ..      88     134 .. 0.94

  Alignments for each domain:
  == domain 1  score: 54.9 bits;  conditional E-value: 2.8e-18
                     CSSSBHHHHHHHHHHHHHHT.TCHHHHHHHHTSS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgkWteeEdelLleavkkhG.nrWkkIaerlggRtekqcrsrwrnyl 46
                     r +W ++Ede+L  +v ++G ++W+ Ia  l +R +kqcr+rwrn+l
       KOO23224.1 36 RRPWNPDEDEQLRSLVDQYGiKSWAQIATNLTNRNGKQCRERWRNHL 82
                     689******************************************97 PP

  == domain 2  score: 41.2 bits;  conditional E-value: 5.4e-14
                      CSSSBHHHHHHHHHHHHHHTTCHHHHHH.HHTSS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgkWteeEdelLleavkkhGnrWkkIae.rlggRtekqcrsrwrn 44 
                      +g+W+ +Ed  + + v+++G +W+ I+e ++  Rt++++++rw++
       KOO23224.1  88 KGEWSVQEDIDIWDKVQEMGTKWAQISElYMSQRTDNDIKNRWNS 132
                      79**************************77779**********97 PP

>> Myb_DNA-bind_6  Myb-like DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.7   1.4   2.3e-20     6e-17       1      59 [.      39      98 ..      39      99 .. 0.96
   2 !   25.7   2.8   3.9e-09     1e-05       1      57 [.      91     150 ..      91     152 .. 0.85

  Alignments for each domain:
  == domain 1  score: 61.7 bits;  conditional E-value: 2.3e-20
  Myb_DNA-bind_6  1 WteeEdeiLlklvekyg.ndWknIaealnrRtpkqcfdrwknkLrpkisrkkwskeedir 59
                    W ++Ede L++lv +yg + W +Ia+ l +R+ kqc++rw+n+Lrp++++++ws +edi+
      KOO23224.1 39 WNPDEDEQLRSLVDQYGiKSWAQIATNLTNRNGKQCRERWRNHLRPQLNKGEWSVQEDID 98
                    9****************889********66****************************97 PP

  == domain 2  score: 25.7 bits;  conditional E-value: 3.9e-09
  Myb_DNA-bind_6   1 WteeEdeiLlklvekygndWknIaeal.nrRtpkqcfdrwknkLrpk...isrkkwskeed 57 
                     W+++Ed  + + v+++g +W +I+e + ++Rt +++++rw++ +  k   +    w +ee 
      KOO23224.1  91 WSVQEDIDIWDKVQEMGTKWAQISELYmSQRTDNDIKNRWNS-IIRKqqhPAGRDWLPEEN 150
                     **************************868*************.544423467777988886 PP

>> Myb_DNA-bind_7  Myb DNA-binding like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.5   0.0      0.11   2.7e+02       6      51 ..      34      80 ..      31      89 .. 0.81
   2 !   16.8   0.6   1.9e-06    0.0048       7      51 ..      87     132 ..      77     141 .. 0.87

  Alignments for each domain:
  == domain 1  score: 1.5 bits;  conditional E-value: 0.11
  Myb_DNA-bind_7  6 kktkkWskeetekFYkaLsqfGt.DFsliaklfpkrtrrqlKlKFkk 51
                    +k+++W+ +e e+  + + q+G   +  ia+ +++r+ +q ++++++
      KOO23224.1 34 AKRRPWNPDEDEQLRSLVDQYGIkSWAQIATNLTNRNGKQCRERWRN 80
                    68899*********999999996257888888888888888877765 PP

  == domain 2  score: 16.8 bits;  conditional E-value: 1.9e-06
  Myb_DNA-bind_7   7 ktkkWskeetekFYkaLsqfGtDFsliaklfpk.rtrrqlKlKFkk 51 
                     ++ +Ws +e  + ++ ++++Gt +  i++l+ + rt++++K+++++
      KOO23224.1  87 NKGEWSVQEDIDIWDKVQEMGTKWAQISELYMSqRTDNDIKNRWNS 132
                     5779*************************97544*********986 PP

>> SLIDE  SLIDE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.3   0.0   1.2e-05     0.032      28      81 ..      17      68 ..       2      74 .. 0.78
   2 ?    1.5   0.1      0.12     3e+02      72     108 ..     100     135 ..      82     138 .. 0.69

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 1.2e-05
       SLIDE 28 veqyknplqelkikyppsnkgkkeyteeeDrfllvllakyGygnyekikkeire 81
                 e+y++pl + +   +p++k++  ++ +eD+ l  l+++yG++++ +i  ++ +
  KOO23224.1 17 AEEYEDPLLDDD-DGAPNAKRRP-WNPDEDEQLRSLVDQYGIKSWAQIATNLTN 68
                467788887777.4556666666.************************988766 PP

  == domain 2  score: 1.5 bits;  conditional E-value: 0.12
       SLIDE  72 yekikkeiresplFrfDwflksrtpqelqkRcetLlk 108
                 ++k+++   +  +   + ++  rt +++++R + +++
  KOO23224.1 100 WDKVQEMGTKWAQ-ISELYMSQRTDNDIKNRWNSIIR 135
                 5555444444333.44578888999999999888775 PP

>> SANT_DAMP1_like  SANT/Myb-like domain of DAMP1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.3   0.0     0.017        45      18      51 ..      18      62 ..      11      75 .. 0.74
   2 !   12.7   1.0   4.2e-05      0.11      22      78 ..      80     136 ..      71     138 .. 0.83

  Alignments for each domain:
  == domain 1  score: 4.3 bits;  conditional E-value: 0.017
  SANT_DAMP1_like 18 eeYeellkeed..........WtkeetdyLfdlckeydlr.fvvi 51
                     eeYe  l ++d          W+ +e ++L +l+++y ++ +  i
       KOO23224.1 18 EEYEDPLLDDDdgapnakrrpWNPDEDEQLRSLVDQYGIKsWAQI 62
                     778777766333444455566****************98646666 PP

  == domain 2  score: 12.7 bits;  conditional E-value: 4.2e-05
  SANT_DAMP1_like  22 ellke....edWtkeetdyLfdlckeydlrfvviaDryelekkkkrsledlkeryYsvark 78 
                      ++l+      +W+ +e   ++d ++e  +++  i + y +    +r+ +d+k+r+ s+ rk
       KOO23224.1  80 NHLRPqlnkGEWSVQEDIDIWDKVQEMGTKWAQISELYMS----QRTDNDIKNRWNSIIRK 136
                      55554332278***************************88....7999*******999886 PP

>> MADF_DNA_bdg  Alcohol dehydrogenase transcription factor Myb/SANT-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   1.0   0.00039         1      27      54 ..      57      84 ..      39     106 .. 0.84
   2 ?    6.2   0.7     0.005        13      27      52 ..     108     133 ..      91     141 .. 0.87

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.00039
  MADF_DNA_bdg 27 kaweeiaeelnekvdveeckkkwkn.LRd 54
                  k w +ia +l  + + ++c+++w+n LR 
    KOO23224.1 57 KSWAQIATNLT-NRNGKQCRERWRNhLRP 84
                  78********6.6999*******873555 PP

  == domain 2  score: 6.2 bits;  conditional E-value: 0.005
  MADF_DNA_bdg  27 kaweeiaeelnekvdveeckkkwknL 52 
                     w +i+e + ++ + +++k++w+++
    KOO23224.1 108 TKWAQISELYMSQRTDNDIKNRWNSI 133
                   68********999**********985 PP

>> Myb_DNA-bind_4  Myb/SANT-like DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.5   0.6    0.0021       5.3      37      62 ..      59      80 ..      42      88 .. 0.78
   2 ?    4.0   0.7     0.025        64      34      63 ..     108     133 ..      89     138 .. 0.67

  Alignments for each domain:
  == domain 1  score: 7.5 bits;  conditional E-value: 0.0021
                    HHHHHHHHHHHC----HHHHHHHHHH CS
  Myb_DNA-bind_4 37 WeevaeamaergykrspeqCkeKien 62
                    W ++a ++     +r+ +qC+e+++n
      KOO23224.1 59 WAQIATNL----TNRNGKQCRERWRN 80
                    55555555....46788*******98 PP

  == domain 2  score: 4.0 bits;  conditional E-value: 0.025
                     HHHHHHHHHHHHHHC----HHHHHHHHHHH CS
  Myb_DNA-bind_4  34 kklWeevaeamaergykrspeqCkeKienL 63 
                     + +W +++e  ++   +r++  +k++++++
      KOO23224.1 108 T-KWAQISELYMS---QRTDNDIKNRWNSI 133
                     3.55555554433...689********987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (348 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       593  (0.0330749); expected 358.6 (0.02)
Passed bias filter:                      380  (0.0211947); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.52u 0.27s 00:00:00.79 Elapsed: 00:00:00.44
# Mc/sec: 2350.74
//
Query:       KOO23225.1  [L=303]
Description: hypothetical protein Ctob_003165 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.4e-13   49.9   0.1    1.5e-12   47.3   0.0    2.2  2  DUF1825   Domain of unknown function (DUF1825)
  ------ inclusion threshold ------
       0.12   12.5   0.7        4.9    7.3   0.1    2.8  3  SAM_Exu   Exuperantia SAM-like domain


Domain annotation for each model (and alignments):
>> DUF1825  Domain of unknown function (DUF1825)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.5   0.0      0.13   1.2e+03      51      67 ..      96     112 ..      80     126 .. 0.65
   2 !   47.3   0.0   1.7e-16   1.5e-12       3     102 ..     198     296 ..     196     297 .. 0.90

  Alignments for each domain:
  == domain 1  score: -0.5 bits;  conditional E-value: 0.13
     DUF1825  51 ryrilmkrlelsddfla 67 
                 + r ++ r+ l  df+a
  KOO23225.1  96 QWRQVLLRMSLVSDFQA 112
                 34445556666666666 PP

  == domain 2  score: 47.3 bits;  conditional E-value: 1.7e-16
     DUF1825   3 ffdseivqqeakelfqdyqeliqlgskygkfdreGkkifiekleelleryrilmkrlelsddflakmtvkqlktqlgqfgitpqqmfdqlnktlermka 101
                  fds +v++e  +l +d+ + i lg++yg fd  Gk  f+++l+++ er  ++ +r+ l      ++   q +  l+++g+   q  + l +  + m+a
  KOO23225.1 198 AFDSPVVRDEYVKLCKDHASTITLGERYGTFDAMGKLAFLDQLQTIEERWEVFYARFALLGALNPEFE-SQTSAFLKSMGMDAAQFREILAEAHALMRA 295
                 59*********************************************************988777765.688899999999999988888888888887 PP

     DUF1825 102 e 102
                 e
  KOO23225.1 296 E 296
                 6 PP

>> SAM_Exu  Exuperantia SAM-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.3   0.1   0.00055       4.9      16      49 ..      97     132 ..      91     136 .. 0.78
   2 ?   -3.2   0.0         1   9.3e+03      29      51 ..     159     181 ..     158     190 .. 0.68
   3 ?    2.4   0.0     0.018   1.6e+02      18      29 ..     279     290 ..     274     295 .. 0.87

  Alignments for each domain:
  == domain 1  score: 7.3 bits;  conditional E-value: 0.00055
     SAM_Exu  16 vravklRrlLAE..ngidyesLkeiweekkkeGlek 49 
                 +r v lR  L+   +  +y +L+++w e++ e+le+
  KOO23225.1  97 WRQVLLRMSLVSdfQAREYYKLTAAWAERQGESLES 132
                 666777777765223568****************97 PP

  == domain 2  score: -3.2 bits;  conditional E-value: 1
     SAM_Exu  29 gidyesLkeiweekkkeGlekll 51 
                 g+d+++L++  ++++ + + +++
  KOO23225.1 159 GVDLAKLSAKQQQQSPTVMGQVM 181
                 78888888877777766666666 PP

  == domain 3  score: 2.4 bits;  conditional E-value: 0.018
     SAM_Exu  18 avklRrlLAEng 29 
                 a ++R +LAE+ 
  KOO23225.1 279 AAQFREILAEAH 290
                 89********86 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (303 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       487  (0.0271627); expected 358.6 (0.02)
Passed bias filter:                      388  (0.0216409); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.44u 0.24s 00:00:00.68 Elapsed: 00:00:00.40
# Mc/sec: 2297.27
//
Query:       KOO23226.1  [L=210]
Description: hypothetical protein Ctob_003167 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.7e-11   42.6  16.5    4.9e-07   29.9   2.0    2.8  2  TPR_12    Tetratricopeptide repeat
    1.5e-06   28.7  19.0      0.062   14.0   8.0    3.9  3  TPR_16    Tetratricopeptide repeat
    0.00067   19.5   5.8       0.12   12.5   0.1    3.3  4  TPR_7     Tetratricopeptide repeat
     0.0014   19.3  16.0       0.78   10.7   0.2    4.5  4  TPR_14    Tetratricopeptide repeat
      0.004   17.2  16.5       0.11   12.7   0.2    4.4  4  TPR_2     Tetratricopeptide repeat
  ------ inclusion threshold ------
       0.01   16.0  10.6       0.24   11.7   0.0    4.2  4  TPR_8     Tetratricopeptide repeat
      0.022   14.6   0.0      0.022   14.6   0.0    4.2  5  TPR_10    Tetratricopeptide repeat
       0.17   12.1   1.0       0.53   10.6   0.1    2.4  3  DUF1598   Protein of unknown function (DUF1598)
       0.36   11.4  18.7        3.5    8.2   0.8    4.2  4  TPR_19    Tetratricopeptide repeat
        2.4    9.0  15.4       0.53   11.0   0.4    4.6  4  TPR_6     Tetratricopeptide repeat
        2.6    8.5   6.1         18    5.8   0.2    2.7  2  CcdA      Post-segregation antitoxin CcdA


Domain annotation for each model (and alignments):
>> TPR_12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.9   2.0     3e-10   4.9e-07       7      76 ..       4      73 ..       1      74 [. 0.92
   2 !   16.9   7.1   3.5e-06    0.0057       2      76 ..      90     165 ..      89     166 .. 0.93

  Alignments for each domain:
  == domain 1  score: 29.9 bits;  conditional E-value: 3e-10
      TPR_12  7 nnlaavlrrlgrydeAlellekaleiarrllGpdhpltattlrnLgrlyralgryeeAlelleealaiae 76
                 ++a++++++ +yd A++ ++  le++r++ G  hp++  tl   + + ++++++++A++ ++e l i e
  KOO23226.1  4 DKMADAHMQASDYDLARKVYNNLLEAMRESSGSSHPGYEMTLGKAAYAALQANQPRAAIKGYTELLGIQE 73
                379********************************************************99988887665 PP

  == domain 2  score: 16.9 bits;  conditional E-value: 3.5e-06
      TPR_12   2 vatalnnlaavlrrlgrydeAlellekaleiarrllGpdh.pltattlrnLgrlyralgryeeAlelleealaiae 76 
                 va++ +++a++l++ g++ +Ale   +a +++ + +   h ++ a++l++ + ++++lgr e A+ + ++al++a+
  KOO23226.1  90 VAQLRVQYAQALAAVGELSDALEQALQAEQAYASEPSLMHsLEHAASLNGVAGVLEKLGRDELAVTYMTKALDAAQ 165
                 5777889*************************999777777********************************987 PP

>> TPR_16  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.5   0.0   5.4e-05     0.089       3      26 ..       6      29 ..       5      38 .. 0.88
   2 ?    5.3  11.4     0.019        32       3      68 .]      48     125 ..      47     125 .. 0.87
   3 !   14.0   8.0   3.8e-05     0.062       4      65 ..      98     165 ..      98     168 .. 0.96

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 5.4e-05
      TPR_16  3 laraalragdyddAaaaleaalkr 26
                +a+a+++a dyd A+++++ +l++
  KOO23226.1  6 MADAHMQASDYDLARKVYNNLLEA 29
                79*******************997 PP

  == domain 2  score: 5.3 bits;  conditional E-value: 0.019
      TPR_16   3 laraalragdyddAaaaleaalkrdpssPd...............aaeAllllgdaalrqgrlaeAa.alyraalraapdap 68 
                 +a+aal+a+++++A++ ++++l  +    +                a+ +  +++a+++ g+l +A+ ++++a  +a++++p
  KOO23226.1  48 AAYAALQANQPRAAIKGYTELLGIQ---EAkgpapkgqevptiagVAQLRVQYAQALAAVGELSDALeQALQA-EQAYASEP 125
                 799*******************988...556777*********************************555555.57887765 PP

  == domain 3  score: 14.0 bits;  conditional E-value: 3.8e-05
      TPR_16   4 araalragdyddAaaaleaalkrdpssPd......aaeAllllgdaalrqgrlaeAaalyraalraap 65 
                 a+a+++ g+  dA++++ +a  +++s+P       +a++l++ + ++ ++gr ++A+ +  +al+aa 
  KOO23226.1  98 AQALAAVGELSDALEQALQAEQAYASEPSlmhsleHAASLNGVAGVLEKLGRDELAVTYMTKALDAAQ 165
                 7899************************************************************9985 PP

>> TPR_7  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.5   0.1   7.3e-05      0.12       1      31 [.       2      33 ..       2      37 .. 0.89
   2 ?   -2.1   0.1       3.3   5.4e+03       9      27 ..      52      70 ..      44      76 .. 0.68
   3 ?   -1.5   0.2       2.2   3.6e+03       7      20 ..      99     112 ..      97     120 .. 0.65
   4 !    8.6   0.0    0.0013       2.1       2      30 ..     137     163 ..     136     173 .. 0.80

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 7.3e-05
       TPR_7  1 aLlnLarlysrlGdyeeAielyeqsL.altkd 31
                aL+ +a+++ +  dy+ A ++y  +L a++++
  KOO23226.1  2 ALDKMADAHMQASDYDLARKVYNNLLeAMRES 33
                7899**********************888876 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 3.3
       TPR_7  9 ysrlGdyeeAielyeqsLa 27
                  + ++ + Ai+ y+++L+
  KOO23226.1 52 ALQANQPRAAIKGYTELLG 70
                4556777888887887665 PP

  == domain 3  score: -1.5 bits;  conditional E-value: 2.2
       TPR_7   7 rlysrlGdyeeAie 20 
                 ++  ++G+ ++A+e
  KOO23226.1  99 QALAAVGELSDALE 112
                 55556666666655 PP

  == domain 4  score: 8.6 bits;  conditional E-value: 0.0013
       TPR_7   2 LlnLarlysrlGdyeeAielyeqsLaltk 30 
                 L+  a + ++lG+ e A+++ ++  al+ 
  KOO23226.1 137 LNGVAGVLEKLGRDELAVTYMTK--ALDA 163
                 566677899**************..5543 PP

>> TPR_14  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.7   0.2   0.00048      0.78       3      29 ..       2      28 ..       1      34 [. 0.92
   2 ?    3.0   0.1      0.15   2.4e+02       6      26 ..      47      67 ..      42      77 .. 0.81
   3 !   10.1   2.4   0.00074       1.2       2      35 ..      92     125 ..      91     131 .. 0.86
   4 ?    3.0   0.1      0.15   2.4e+02      10      31 ..     143     164 ..     139     183 .. 0.59

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00048
      TPR_14  3 allalaeallalGdpdeAiallrrala 29
                al ++a+a++++ d+d A+++++ +l+
  KOO23226.1  2 ALDKMADAHMQASDYDLARKVYNNLLE 28
                7889*******************9987 PP

  == domain 2  score: 3.0 bits;  conditional E-value: 0.15
      TPR_14  6 alaeallalGdpdeAiallrr 26
                ++a a l++ +p++Ai+ + +
  KOO23226.1 47 KAAYAALQANQPRAAIKGYTE 67
                57889999*******986655 PP

  == domain 3  score: 10.1 bits;  conditional E-value: 0.00074
      TPR_14   2 eallalaeallalGdpdeAiallrralalaPdda 35 
                 +++ ++a+al+a G++ +A++ + +a +++ +++
  KOO23226.1  92 QLRVQYAQALAAVGELSDALEQALQAEQAYASEP 125
                 57899*****************999999887665 PP

  == domain 4  score: 3.0 bits;  conditional E-value: 0.15
      TPR_14  10 allalGdpdeAiallrralala 31 
                 +l+ lG+ + A+++  +al++a
  KOO23226.1 143 VLEKLGRDELAVTYMTKALDAA 164
                 5666666555555555555432 PP

>> TPR_2  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.7   0.2   6.7e-05      0.11       3      30 ..       2      29 ..       1      33 [. 0.90
   2 ?    2.6   0.2      0.11   1.8e+02       7      28 ..      48      69 ..      44      73 .. 0.87
   3 ?    1.5   2.7      0.25   4.1e+02       6      28 ..      96     118 ..      91     122 .. 0.84
   4 !    8.4   0.1    0.0016       2.6       3      29 ..     136     162 ..     134     166 .. 0.85

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 6.7e-05
       TPR_2  3 alynlGlayyklgdyeeAleafekAlel 30
                al  +++a++++ dy+ A++ ++  le 
  KOO23226.1  2 ALDKMADAHMQASDYDLARKVYNNLLEA 29
                67789*******************9986 PP

  == domain 2  score: 2.6 bits;  conditional E-value: 0.11
       TPR_2  7 lGlayyklgdyeeAleafekAl 28
                 ++a+++++++  A++ + + l
  KOO23226.1 48 AAYAALQANQPRAAIKGYTELL 69
                6899************999887 PP

  == domain 3  score: 1.5 bits;  conditional E-value: 0.25
       TPR_2   6 nlGlayyklgdyeeAleafekAl 28 
                 + ++a+++ g++ +Ale   +A 
  KOO23226.1  96 QYAQALAAVGELSDALEQALQAE 118
                 5799999*********9999885 PP

  == domain 4  score: 8.4 bits;  conditional E-value: 0.0016
       TPR_2   3 alynlGlayyklgdyeeAleafekAle 29 
                  l+  + +++klg+ e A+ ++ kAl 
  KOO23226.1 136 SLNGVAGVLEKLGRDELAVTYMTKALD 162
                 566778899****************97 PP

>> TPR_8  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.1   0.2    0.0043         7       6      29 ..       5      28 ..       2      30 .. 0.89
   2 ?    1.1   0.2      0.36   5.9e+02       6      32 ..      47      73 ..      44      75 .. 0.85
   3 ?   -0.2   0.3      0.99   1.6e+03       2      24 ..      99     121 ..      95     122 .. 0.66
   4 ?   11.7   0.0   0.00015      0.24       8      32 ..     141     165 ..     134     167 .. 0.84

  Alignments for each domain:
  == domain 1  score: 7.1 bits;  conditional E-value: 0.0043
                HHHHHHHHTT-HHHHHHHHHHHHH CS
       TPR_8  6 nlgsiylklgdyeeAkeyyekale 29
                ++++++++  dy+ A ++y+  le
  KOO23226.1  5 KMADAHMQASDYDLARKVYNNLLE 28
                689****************98887 PP

  == domain 2  score: 1.1 bits;  conditional E-value: 0.36
                HHHHHHHHTT-HHHHHHHHHHHHHHHH CS
       TPR_8  6 nlgsiylklgdyeeAkeyyekaleldp 32
                + +++ l+ ++  +A++ y + l +++
  KOO23226.1 47 KAAYAALQANQPRAAIKGYTELLGIQE 73
                678999999*******99999998876 PP

  == domain 3  score: -0.2 bits;  conditional E-value: 0.99
                 CHHHHHHHHHHHTT-HHHHHHHH CS
       TPR_8   2 eayynlgsiylklgdyeeAkeyy 24 
                 +a+   g + + l++  +A+++y
  KOO23226.1  99 QALAAVGELSDALEQALQAEQAY 121
                 56666666666666666666666 PP

  == domain 4  score: 11.7 bits;  conditional E-value: 0.00015
                 HHHHHHTT-HHHHHHHHHHHHHHHH CS
       TPR_8   8 gsiylklgdyeeAkeyyekaleldp 32 
                 + +++klg+ e A+ y+ kal++++
  KOO23226.1 141 AGVLEKLGRDELAVTYMTKALDAAQ 165
                 66799****************9875 PP

>> TPR_10  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.5   0.1    0.0047       7.7       3      41 ..       1      39 [.       1      40 [. 0.95
   2 ?   -1.1   0.0       1.2   1.9e+03      26      37 ..      59      70 ..      54      75 .. 0.82
   3 ?    1.2   1.3      0.22   3.6e+02       9      28 ..      98     117 ..      90     121 .. 0.83
   4 ?   14.6   0.0   1.4e-05     0.022       2      40 ..     134     172 ..     133     174 .. 0.95
   5 ?   -3.9   0.6       8.8   1.4e+04      16      23 ..     200     207 ..     197     209 .. 0.54

  Alignments for each domain:
  == domain 1  score: 6.5 bits;  conditional E-value: 0.0047
      TPR_10  3 sslnNLanalrqrgrydeAealleealairrrllGpdHP 41
                ++l  +a a+ q  +yd A++ +   l++ r+  G  HP
  KOO23226.1  1 MALDKMADAHMQASDYDLARKVYNNLLEAMRESSGSSHP 39
                6889999*******************************9 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 1.2
      TPR_10 26 eealairrrllG 37
                + a+  + +llG
  KOO23226.1 59 RAAIKGYTELLG 70
                789999999999 PP

  == domain 3  score: 1.2 bits;  conditional E-value: 0.22
      TPR_10   9 analrqrgrydeAealleea 28 
                 a al ++g++ +A++ + +a
  KOO23226.1  98 AQALAAVGELSDALEQALQA 117
                 88999999999999987766 PP

  == domain 4  score: 14.6 bits;  conditional E-value: 1.4e-05
      TPR_10   2 AsslnNLanalrqrgrydeAealleealairrrllGpdH 40 
                 A+sln  a +l ++gr + A+ ++ +al++ ++++ +d+
  KOO23226.1 134 AASLNGVAGVLEKLGRDELAVTYMTKALDAAQAVVSADP 172
                 89********************************99885 PP

  == domain 5  score: -3.9 bits;  conditional E-value: 8.8
      TPR_10  16 grydeAea 23 
                 +r  eAea
  KOO23226.1 200 QRQREAEA 207
                 34555554 PP

>> DUF1598  Protein of unknown function (DUF1598)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.0         5   8.2e+03      20      39 ..      14      33 ..       4      36 .. 0.57
   2 ?   -2.3   0.0       3.3   5.5e+03      23      44 ..      52      73 ..      43      75 .. 0.73
   3 ?   10.6   0.1   0.00032      0.53      24      67 ..     131     174 ..     108     189 .. 0.80

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 5
     DUF1598 20 vkqrlspgeveklveglkka 39
                +   l+++  ++l+e ++++
  KOO23226.1 14 SDYDLARKVYNNLLEAMRES 33
                33336666666777777665 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 3.3
     DUF1598 23 rlspgeveklveglkkaLGrQd 44
                 l+++++++ ++g  + LG Q+
  KOO23226.1 52 ALQANQPRAAIKGYTELLGIQE 73
                4677778888888888999886 PP

  == domain 3  score: 10.6 bits;  conditional E-value: 0.00032
     DUF1598  24 lspgeveklveglkkaLGrQdvtvtGipadsrvArvlveaDyrm 67 
                 l+ ++  + v+g+ ++LGr ++ vt +  +  +A+ +v aD +m
  KOO23226.1 131 LEHAASLNGVAGVLEKLGRDELAVTYMTKALDAAQAVVSADPEM 174
                 55666667789999***************************999 PP

>> TPR_19  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.8   0.1    0.0028       4.6      31      56 ..       6      31 ..       2      37 .. 0.88
   2 ?    8.2   0.8    0.0021       3.5       2      46 ..      11      63 ..      10      70 .. 0.86
   3 ?    3.9   7.2     0.047        77       2      64 ..      53     131 ..      52     137 .. 0.68
   4 ?    4.4   0.3     0.033        54      38      68 .]     158     186 ..     151     186 .. 0.86

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 0.0028
      TPR_19 31 LAeallalgqldeAealLdalpeedp 56
                +A+a++++ ++d A+++ + l+e+ +
  KOO23226.1  6 MADAHMQASDYDLARKVYNNLLEAMR 31
                8****************999998866 PP

  == domain 2  score: 8.2 bits;  conditional E-value: 0.0021
      TPR_19  2 laegdyaeAlalleqalqe........dpknaearllLAeallalgqldeAea 46
                +++ dy+ A + + ++l++         p+++  +   A a l+++q+ +A++
  KOO23226.1 11 MQASDYDLARKVYNNLLEAmressgssHPGYEMTLGKAAYAALQANQPRAAIK 63
                6889*****99999998777777777788899999999**********99987 PP

  == domain 3  score: 3.9 bits;  conditional E-value: 0.047
      TPR_19   2 laegdyaeAlalleqal..qe....dpk.........naearllLAeallalgqldeAealLdalpeedpdd.aryasL 64 
                 l+++++ +A++ ++++l  qe    +pk          a +r ++A+al a g+l +A +   ++ ++++ + + ++sL
  KOO23226.1  53 LQANQPRAAIKGYTELLgiQEakgpAPKgqevptiagVAQLRVQYAQALAAVGELSDALEQALQAEQAYASEpSLMHSL 131
                 667777777777777664422344411133333344478899999*************998888888877766777766 PP

  == domain 4  score: 4.4 bits;  conditional E-value: 0.033
      TPR_19  38 lgqldeAealLdalpeedpddaryasLlAkl 68 
                 ++ ld+A+a+++a pe+dp+   + s++A l
  KOO23226.1 158 TKALDAAQAVVSADPEMDPK--LVESAQANL 186
                 56799**************9..888888875 PP

>> TPR_6  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.4   0.00033      0.53       2      28 ..       2      28 ..       1      29 [. 0.94
   2 ?    3.1   0.3      0.11   1.8e+02       5      27 ..      47      69 ..      45      70 .. 0.83
   3 ?   -0.3   1.0       1.3   2.1e+03       6      20 ..      97     111 ..      88     122 .. 0.52
   4 ?    2.3   0.1       0.2   3.3e+02      12      28 ..     146     162 ..     141     173 .. 0.62

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00033
                HHHHHHHHHHHHHHHHHHHHHHHHHHH CS
       TPR_6  2 AlyklalsyrklgdtdkAlealerlik 28
                Al k+a ++ ++ d+d A++ +++l++
  KOO23226.1  2 ALDKMADAHMQASDYDLARKVYNNLLE 28
                899********99***********986 PP

  == domain 2  score: 3.1 bits;  conditional E-value: 0.11
                HHHHHHHHHHHHHHHHHHHHHHH CS
       TPR_6  5 klalsyrklgdtdkAlealerli 27
                k+a++ ++++++++A++ + +l+
  KOO23226.1 47 KAAYAALQANQPRAAIKGYTELL 69
                5677888879*******999886 PP

  == domain 3  score: -0.3 bits;  conditional E-value: 1.3
                 HHHHHHHHHHHHHHH CS
       TPR_6   6 lalsyrklgdtdkAl 20 
                  a+++ + g+ ++Al
  KOO23226.1  97 YAQALAAVGELSDAL 111
                 333333323444444 PP

  == domain 4  score: 2.3 bits;  conditional E-value: 0.2
                 HHHHHHHHHHHHHHHHH CS
       TPR_6  12 klgdtdkAlealerlik 28 
                 klg+ + A++++ + ++
  KOO23226.1 146 KLGRDELAVTYMTKALD 162
                 45566666666666554 PP

>> CcdA  Post-segregation antitoxin CcdA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.8   0.2     0.011        18      13      36 ..      97     120 ..      94     149 .. 0.78
   2 ?    4.2   1.6     0.037        60      29      48 ..     187     206 ..     179     208 .. 0.86

  Alignments for each domain:
  == domain 1  score: 5.8 bits;  conditional E-value: 0.011
        CcdA  13 laqAralgiNlSatleeaLaeevk 36 
                 +aqA a+   lS +le+aL++e +
  KOO23226.1  97 YAQALAAVGELSDALEQALQAEQA 120
                 789999999**********99865 PP

  == domain 2  score: 4.2 bits;  conditional E-value: 0.037
        CcdA  29 eaLaeevkeekaerwkeenr 48 
                  +L+++v++++a+++++e +
  KOO23226.1 187 NGLKKHVARKQAKQRQREAE 206
                 579************99976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (210 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1286  (0.0717274); expected 358.6 (0.02)
Passed bias filter:                      609  (0.0339673); expected 358.6 (0.02)
Passed Vit filter:                        52  (0.00290033); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.46u 0.25s 00:00:00.71 Elapsed: 00:00:00.42
# Mc/sec: 1510.13
//
Query:       KOO23227.1  [L=527]
Description: voltage-gated ion channel superfamily [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.4e-15   57.0   8.5    4.5e-13   49.0   2.3    2.4  2  Ion_trans_2   Ion channel
    2.8e-05   24.6   0.0      6e-05   23.6   0.0    1.5  1  NYN           NYN domain
     0.0013   18.1   9.4     0.0025   17.2   0.1    3.6  3  EF-hand_1     EF hand
     0.0019   18.6   1.6      0.073   13.5   0.5    2.6  3  EF-hand_7     EF-hand domain pair
  ------ inclusion threshold ------
      0.016   15.1   0.0      0.016   15.1   0.0    3.3  3  EF-hand_6     EF-hand domain
      0.096   12.2   6.6       0.47   10.0   0.0    3.5  3  EF-hand_5     EF hand
       0.18   11.0   7.6        1.8    7.7   7.5    2.1  2  Ion_trans     Ion transport protein
       0.24   11.0   0.1       0.24   11.0   0.1    1.5  2  Angiomotin_C  Angiomotin C terminal


Domain annotation for each model (and alignments):
>> Ion_trans_2  Ion channel
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.4   0.5   0.00011      0.24      53      77 ..     165     189 ..     156     191 .. 0.84
   2 !   49.0   2.3     2e-16   4.5e-13       3      75 ..     242     310 ..     239     314 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00011
                  HHHHHHHHHHHHHHHHHHHHHHHHH CS
  Ion_trans_2  53 lftivyillGlalfalflavlgkvl 77 
                  +fti+yi++G++++++ l+ l++ l
   KOO23227.1 165 AFTIFYIFFGICIVFAQLSSLISKL 189
                  89****************9998876 PP

  == domain 2  score: 49.0 bits;  conditional E-value: 2e-16
                  HHHTCHHHHHHHHT....T---HHHHHHHHHHHHTTS----SSTT-----HHHHHHHHHHHHHHHHHHHHHHH CS
  Ion_trans_2   3 lllvlifgaviysleegwekwsfldalYfsfvtltTiGYGdivpetdagrlftivyillGlalfalflavlgk 75 
                  +++  +f+av+  l    e+w+f  alY ++vt tT+GYGd+  +t +g + +++ i++ ++l+a+++ ++ k
   KOO23227.1 242 VTIQCCFSAVFSVL----EGWDFGLALYHCLVTATTVGYGDVRINTSGGHMWAFFHIVISVSLLAAIVGDVNK 310
                  44445666666666....889**********************************************998865 PP

>> NYN  NYN domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.6   0.0   2.7e-08     6e-05       3     128 ..      18     147 ..      16     164 .. 0.73

  Alignments for each domain:
  == domain 1  score: 23.6 bits;  conditional E-value: 2.7e-08
         NYN   3 avfiDgenlpvpakgkevdyrklleeirs.........kgelvraraygnwedeeqnkfqdalsstgi.kvkhkplkkrggsgkkavDvelavdalela 91 
                  v++D+en+ vp++   +d  + ++++++          g +  ++a+ n+ d+  ++++dal+++ + +v    ++       +++D +l   + + +
  KOO23227.1  18 RVLWDIENVSVPSG---IDTVEAVRALERwletrglwgAGVVGLITAFFNP-DSVGTRMRDALNRANVeQVLASSKR-------EDADRKLNARLERDL 105
                 59************...9999999999999999999887779999*****4.455699**********666444333.......444444444443333 PP

         NYN  92 ydnky...dtivLvsgDgDFaplveklrergkrVevlla..e 128
                 +  ++     +v ++ D DF+  +++++erg  +++l +  +
  KOO23227.1 106 ALLPIgaaTAVVFITADMDFIEQLRRVKERGGPTVLLTTalH 147
                 333344448999****************99977777664342 PP

>> EF-hand_1  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.9   1.2     0.089     2e+02       9      19 ..     210     220 ..     208     221 .. 0.85
   2 ?    2.7   0.2     0.051   1.1e+02       4      15 ..     332     343 ..     331     354 .. 0.90
   3 !   17.2   0.1   1.1e-06    0.0025       3      27 ..     369     393 ..     367     394 .. 0.90

  Alignments for each domain:
  == domain 1  score: 1.9 bits;  conditional E-value: 0.089
                 HTTTSSSEEEH CS
   EF-hand_1   9 fDkDgdGkIdf 19 
                 +D DgdG+ df
  KOO23227.1 210 IDIDGDGTADF 220
                 7******9887 PP

  == domain 2  score: 2.7 bits;  conditional E-value: 0.051
                 HHHHHHTTTSSS CS
   EF-hand_1   4 eiFrefDkDgdG 15 
                 ++ r +DkD++G
  KOO23227.1 332 DMLRSLDKDQSG 343
                 68999******9 PP

  == domain 3  score: 17.2 bits;  conditional E-value: 1.1e-06
                 HHHHHHHTTTSSSEEEHHHHHHHHH CS
   EF-hand_1   3 keiFrefDkDgdGkIdfeEfkellk 27 
                  ++F+ +DkDg+G ++ e++++ +k
  KOO23227.1 369 TKLFESMDKDGSGVLTEEDMVAGVK 393
                 589*****************99876 PP

>> EF-hand_7  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.0      0.87     2e+03      26      60 ..     184     217 ..     167     221 .. 0.67
   2 !   13.5   0.5   3.2e-05     0.073      36      68 ..     355     390 ..     323     393 .. 0.63
   3 !   12.4   0.0   7.5e-05      0.17       6      67 ..     369     389 ..     365     411 .. 0.67

  Alignments for each domain:
  == domain 1  score: -0.7 bits;  conditional E-value: 0.87
   EF-hand_7  26 rllrkifqgagegsklsdeelellfke..fDtdkdGv 60 
                 +l+ k+f   ++ ++ s+e  e++f    +D d+dG+
  KOO23227.1 184 SLISKLF---SPLFEASREFFERIFPQkgIDIDGDGT 217
                 5555555...666666665555555332359999985 PP

  == domain 2  score: 13.5 bits;  conditional E-value: 3.2e-05
   EF-hand_7  36 gegsklsdeele...llfkefDtdkdGvisfdEFlk 68 
                 ++  +++ + ++   +lf+ +D+d++Gv++ +++++
  KOO23227.1 355 DRLGVIDMDNVRlftKLFESMDKDGSGVLTEEDMVA 390
                 555555666644333888888999999999999876 PP

  == domain 3  score: 12.4 bits;  conditional E-value: 7.5e-05
   EF-hand_7   6 eaFkelDtdgdgyldkeellrllrkifqgagegsklsdeelellfkefDtdkdGvisfdEFl 67 
                 +                                         +lf+ +D+d++Gv++ ++++
  KOO23227.1 369 T-----------------------------------------KLFESMDKDGSGVLTEEDMV 389
                 4.........................................45555555555555555554 PP

>> EF-hand_6  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   0.7      0.77   1.7e+03       9      18 ..     210     219 ..     208     221 .. 0.79
   2 ?    1.8   0.3      0.13     3e+02       7      27 ..     335     354 ..     331     361 .. 0.81
   3 ?   15.1   0.0   7.3e-06     0.016       3      25 ..     369     391 ..     367     395 .. 0.87

  Alignments for each domain:
  == domain 1  score: -0.6 bits;  conditional E-value: 0.77
   EF-hand_6   9 fDkdgdGkid 18 
                 +D dgdG+ d
  KOO23227.1 210 IDIDGDGTAD 219
                 899****966 PP

  == domain 2  score: 1.8 bits;  conditional E-value: 0.13
   EF-hand_6   7 klfDkdgdGkidaeElrkalr 27 
                 + +Dkd +G +d+ E++  + 
  KOO23227.1 335 RSLDKDQSG-VDKFEFVIGMM 354
                 679*****9.99999987665 PP

  == domain 3  score: 15.1 bits;  conditional E-value: 7.3e-06
   EF-hand_6   3 reaFklfDkdgdGkidaeElrka 25 
                  ++F+ +Dkdg+G ++ e++++ 
  KOO23227.1 369 TKLFESMDKDGSGVLTEEDMVAG 391
                 589****************9875 PP

>> EF-hand_5  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.7   1.4      0.19   4.2e+02       8      15 ..     210     217 ..     210     219 .. 0.92
   2 ?    1.6   0.1     0.096   2.2e+02       3      14 ..     332     343 ..     329     344 .. 0.86
   3 ?   10.0   0.0   0.00021      0.47       4      19 ..     371     386 ..     369     392 .. 0.88

  Alignments for each domain:
  == domain 1  score: 0.7 bits;  conditional E-value: 0.19
                 H-SS-SSC CS
   EF-hand_5   8 iDlNgDGk 15 
                 iD +gDG+
  KOO23227.1 210 IDIDGDGT 217
                 8******6 PP

  == domain 2  score: 1.6 bits;  conditional E-value: 0.096
                 HHHHHH-SS-SS CS
   EF-hand_5   3 dtFqaiDlNgDG 14 
                 d+++ +D++++G
  KOO23227.1 332 DMLRSLDKDQSG 343
                 68899******9 PP

  == domain 3  score: 10.0 bits;  conditional E-value: 0.00021
                 HHHHH-SS-SSCE-HH CS
   EF-hand_5   4 tFqaiDlNgDGkIske 19 
                 +F+ +D++g+G ++ e
  KOO23227.1 371 LFESMDKDGSGVLTEE 386
                 7***********9987 PP

>> Ion_trans  Ion transport protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.9   0.6       0.1   2.3e+02     200     237 ..     152     190 ..     139     198 .. 0.60
   2 ?    7.7   7.5   0.00082       1.8     178     231 ..     259     306 ..     167     311 .. 0.76

  Alignments for each domain:
  == domain 1  score: 0.9 bits;  conditional E-value: 0.1
                 HHHHHHS.HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
   Ion_trans 200 yatldek.skvaliyfvifiilgsflllNlliaviadnf 237
                 y+ l  + + ++l++ + +i++g+ ++++ l  +i++ f
  KOO23227.1 152 YNALAHSaTETHLAFTIFYIFFGICIVFAQLSSLISKLF 190
                 444444445555666677777777777776666666555 PP

  == domain 2  score: 7.7 bits;  conditional E-value: 0.00082
                 SHHHHHHHHHHHHTTSSHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHH CS
   Ion_trans 178 nfftallwlfrlmttegwgdilyatldekskvaliyfvifiilgsflllNllia 231
                 +f+ al+  ++++tt+g+gd+  +t +++      + + f i++s+ ll+ +++
  KOO23227.1 259 DFGLALYHCLVTATTVGYGDVRINTSGGH------MWAFFHIVISVSLLAAIVG 306
                 3999*************************......8888888888888888887 PP

>> Angiomotin_C  Angiomotin C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.1   0.00011      0.24       8      40 ..      76     108 ..      70     119 .. 0.80
   2 ?   -3.8   0.3       3.4   7.6e+03      42      62 ..     501     520 ..     499     525 .. 0.53

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00011
  Angiomotin_C   8 lqqaLaqlqaaceKREqlekrlrtrLErELksl 40 
                   l++a  +   a  KRE+ +++l +rLEr+L+ l
    KOO23227.1  76 LNRANVEQVLASSKREDADRKLNARLERDLALL 108
                   4445445556999*****************987 PP

  == domain 2  score: -3.8 bits;  conditional E-value: 3.4
  Angiomotin_C  42 aqqrqksaqeslsdselsasa 62 
                   +q+r+ ++++s++d e+s sa
    KOO23227.1 501 MQRRN-KTTSSSADEEYSYSA 520
                   34444.444445557777665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (527 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       724  (0.0403815); expected 358.6 (0.02)
Passed bias filter:                      570  (0.0317921); expected 358.6 (0.02)
Passed Vit filter:                        47  (0.00262145); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.59u 0.27s 00:00:00.86 Elapsed: 00:00:00.44
# Mc/sec: 3636.68
//
Query:       KOO23228.1  [L=228]
Description: gns1 sur4 family protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      1e-46  159.5   4.2    1.3e-46  159.2   4.2    1.0  1  ELO       GNS1/SUR4 family


Domain annotation for each model (and alignments):
>> ELO  GNS1/SUR4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  159.2   4.2   7.2e-51   1.3e-46      32     235 ..       9     213 ..       3     227 .. 0.87

  Alignments for each domain:
  == domain 1  score: 159.2 bits;  conditional E-value: 7.2e-51
         ELO  32 pfklkalvilhnlflavlSavgfvgmvkallevlkk............kglvdllckddssdegrlrngllaflvllfylsKfvEllDTvflvlrkk.. 116
                  ++ k l ++hn++l+v S+++fvg++++l+  +++             g++ ++c    + +++  +g l+f+ +++ylsK++EllDTv+ +l+++  
  KOO23228.1   9 GVETKMLQAVHNMILCVGSLIMFVGTLRELVLRVQQeavappaeagalGGMYFFFC----EAAKTEPRGALFFWSYIYYLSKYYELLDTVLQLLKGRpp 103
                 567788999******************876666655789999999***********....777888999****************************99 PP

         ELO 117 qvsfLhvYHHatvmllmwaglrfatssgivfivllNsfvHaimYtYYflsalgakklvvpwkrliTslQilQfvvgllaavyllvsytlkkvgCdtsqt 215
                 +  fLhvYHHa+v++++wa+l+++ + ++  + l+N++vH++mY+YYf     + +l+vpwkrl+T++Qi+Qf   +++ +++l+   ++  +C+ s  
  KOO23228.1 104 PHFFLHVYHHAVVLVMAWAWLEYVQTLQFGGL-LFNTAVHVVMYYYYFRR---VLNLPVPWKRLVTQFQIIQFGTSAACYFVTLYLLATG-AECRGS-- 195
                 99**********************66666666.*****************...667789***************9998888888886666.89*666.. PP

         ELO 216 pkaairlnllyllslllLFl 235
                   +a+  n++++++ll+ F 
  KOO23228.1 196 --RALVGNFVFNMTLLYQFF 213
                 ..577778888877777664 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (228 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       465  (0.0259356); expected 358.6 (0.02)
Passed bias filter:                      241  (0.0134419); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.25s 00:00:00.64 Elapsed: 00:00:00.39
# Mc/sec: 1734.38
//
Query:       KOO23229.1  [L=445]
Description: hypothetical protein Ctob_003175 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
     0.0026   17.7   1.8     0.0047   16.9   1.8    1.4  1  PAN_1     PAN domain


Domain annotation for each model (and alignments):
>> PAN_1  PAN domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   1.8   2.6e-07    0.0047      21      57 ..      37      71 ..      31     104 .. 0.83

  Alignments for each domain:
  == domain 1  score: 16.9 bits;  conditional E-value: 2.6e-07
                CSSHHHHHHHHHHSTTS--SEEEEETTTTEEEEEESS CS
       PAN_1 21 vdsaeeCaerCseekkfrCrsftfnnstkeCylksed 57
                ++s+e C +rC   ++  C ++++ + ++ C +++  
  KOO23229.1 37 AQSLERCVQRCLACAR--CNFVSYSRVNRDCSWHHAC 71
                6899************..*************999865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (445 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       362  (0.0201908); expected 358.6 (0.02)
Passed bias filter:                      237  (0.0132188); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.27s 00:00:00.75 Elapsed: 00:00:00.43
# Mc/sec: 3141.91
//
Query:       KOO23230.1  [L=490]
Description: hypothetical protein Ctob_003174 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (490 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       374  (0.0208601); expected 358.6 (0.02)
Passed bias filter:                      295  (0.0164538); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.47u 0.24s 00:00:00.71 Elapsed: 00:00:00.40
# Mc/sec: 3701.56
//
Query:       KOO23231.1  [L=83]
Description: hypothetical protein Ctob_003173 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.021   15.1   0.0      0.025   14.9   0.0    1.1  1  CBM_2     Cellulose binding domain


Domain annotation for each model (and alignments):
>> CBM_2  Cellulose binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.9   0.0   1.4e-06     0.025       5      47 ..       2      44 ..       1      55 [. 0.78

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 1.4e-06
                EEEEEE-SSEEEEEEEEEE-SSS-EES-EEEEE--TTEEEEEE CS
       CBM_2  5 yavtseWetGftasvtvkNsgssaingWtvewtlpagqrvtql 47
                y++   W +Gf+a vtv N g ++    +v++  + g ++ q+
  KOO23231.1  2 YKTGRRWTGGFEAFVTVGNAGVAPGFAVQVDYRSEPGLQMLQA 44
                777889*****************96666666666666666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (83 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       158  (0.00881254); expected 358.6 (0.02)
Passed bias filter:                      140  (0.00780858); expected 358.6 (0.02)
Passed Vit filter:                        11  (0.000613531); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.31u 0.24s 00:00:00.55 Elapsed: 00:00:00.36
# Mc/sec: 682.65
//
Query:       KOO23232.1  [L=368]
Description: gtp-binding protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.9e-39  132.7   0.2    1.2e-38  131.2   0.1    1.9  2  YchF-GTPase_C  Protein of unknown function (DUF933)
    4.4e-24   84.8   0.1    1.1e-23   83.4   0.0    1.9  2  MMR_HSR1       50S ribosome-binding GTPase
    4.7e-08   32.7   0.3    2.1e-07   30.6   0.0    2.2  2  FeoB_N         Ferrous iron transport protein B
  ------ inclusion threshold ------
      0.017   15.2   0.3        7.9    6.5   0.1    3.0  3  Dynamin_N      Dynamin family
      0.039   13.9   0.1        3.2    7.6   0.0    2.4  2  RsgA_GTPase    RsgA GTPase
       0.57   10.2   2.4       0.82    9.7   0.1    2.3  2  DUF1471        Protein of unknown function (DUF1471)
        2.9    8.0   7.8       0.55   10.3   2.2    2.3  2  DHR10          Designed helical repeat protein 10 domain


Domain annotation for each model (and alignments):
>> YchF-GTPase_C  Protein of unknown function (DUF933)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.0       1.8   4.6e+03      47      68 ..     137     159 ..     108     163 .. 0.66
   2 !  131.2   0.1   4.5e-42   1.2e-38       1      84 []     284     367 ..     284     367 .. 0.99

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 1.8
  YchF-GTPase_C  47 edlvelgs.eaaakeagklrleg 68 
                    +dl ++++  ++a++  k ++eg
     KOO23232.1 137 ADLSQVEKrLEKARKDAKGKKEG 159
                    45555544366666666666665 PP

  == domain 2  score: 131.2 bits;  conditional E-value: 4.5e-42
  YchF-GTPase_C   1 LitffTaGekevraWtikkgttapqaAgviHsDfekgFiraevikyedlvelgseaaakeagklrlegkdyvvqdgDiilfkfN 84 
                    L+t+fT Ge+e++aWti++g+ apqaAgviHsDfe+gFirae+++y+dlv++gse+aake+gk+r+egk+yvvq+gD++lf+fN
     KOO23232.1 284 LRTYFTSGETETKAWTIRNGWLAPQAAGVIHSDFERGFIRAETVAYADLVAAGSEKAAKENGKVRSEGKEYVVQEGDVMLFRFN 367
                    79*********************************************************************************9 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   83.4   0.0   4.5e-27   1.1e-23       2      87 ..       6     118 ..       5     210 .. 0.84
   2 ?   -3.0   0.1         3   7.7e+03      75      94 ..     232     251 ..     214     261 .. 0.50

  Alignments for each domain:
  == domain 1  score: 83.4 bits;  conditional E-value: 4.5e-27
                 EEEEESTTSSHHHHHHHHHTS.TEEESSSTTSSSSEEEEEEEETTEE.................EEEEECGGCSSHHHHHHHHHHHHHHHHC.TSEEEE CS
    MMR_HSR1   2 vaivGrpNvGKStLinaltge.kaivsdkpgtTrdinegrvklkgke.................ielvDtpGliegaseekglgkaflalee.adlill 81 
                 ++ivG pNvGKStL+nal+g  +a+++++p++T+++n+g +++ +k+                 + +vD++Gl+egas+++glg++fla+++ +d+i++
  KOO23232.1   6 AGIVGLPNVGKSTLFNALMGGpQAQAANFPFCTIEPNTGVIAVPDKRldklaeinksvkkvptsLSFVDIAGLVEGASKGEGLGNQFLANIReCDAIVH 104
                 79******************999****************9994433345556666666666677*************************8877****** PP

                 EEETT........T CS
    MMR_HSR1  82 vvdas........e 87 
                 vv++         +
  KOO23232.1 105 VVRCFddaniihvS 118
                 **988544444441 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 3
                 C.TSEEEEEEETTTTCSHHHH CS
    MMR_HSR1  75 e.adlillvvdaseeklkpld 94 
                 e a+++++  +++ ++l++ld
  KOO23232.1 232 EgAKVVVVSAQVE-AELAELD 251
                 2244444444433.3344444 PP

>> FeoB_N  Ferrous iron transport protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.6   0.0   8.2e-11   2.1e-07       4      48 ..       7      52 ..       4     115 .. 0.79
   2 ?   -2.2   0.1         1   2.6e+03     107     152 ..     203     250 ..     200     253 .. 0.58

  Alignments for each domain:
  == domain 1  score: 30.6 bits;  conditional E-value: 8.2e-11
                EEEESTTSSHHHHHHHHHTT.SEEEEESTTSSSEEEEEEEEETTEE CS
      FeoB_N  4 alvGnpnvGkttlfnaltga.kqkvgNwpGvtvekkegklklkgke 48
                 +vG pnvGk+tlfnal g  + + +N+p  t+e ++g + + +k+
  KOO23232.1  7 GIVGLPNVGKSTLFNALMGGpQAQAANFPFCTIEPNTGVIAVPDKR 52
                689**************97626789*************99885544 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 1
                 SEEEEEETHHHHHHTTEE.E-.HHHHHHHHTS-EEEEBTTTTBTHHHH CS
      FeoB_N 107 pvvlalnmideaekkgie.id.lkkLsekLgvpvvktsakkkegieel 152
                 pv+ a n+ d   ++g + +d +++ ++k g +vv +sa+ + ++ el
  KOO23232.1 203 PVIYAANVQDSDLASGNDmVDrVRAQADKEGAKVVVVSAQVEAELAEL 250
                 556666665554444433133133444566888888888888888777 PP

>> Dynamin_N  Dynamin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.5   0.1    0.0031       7.9       3      20 ..       8      25 ..       7      30 .. 0.89
   2 ?    5.1   0.0    0.0084        22      83     139 ..      50     109 ..      37     127 .. 0.81
   3 ?   -1.3   0.0      0.77     2e+03      62      94 ..     136     168 ..     112     177 .. 0.79

  Alignments for each domain:
  == domain 1  score: 6.5 bits;  conditional E-value: 0.0031
                EEEBTTTTHHHHHHHHHT CS
   Dynamin_N  3 vvGsqSsGKSSvlnaLlg 20
                +vG  + GKS++ naL+g
  KOO23232.1  8 IVGLPNVGKSTLFNALMG 25
                6888899**********9 PP

  == domain 2  score: 5.1 bits;  conditional E-value: 0.0084
                 SSS--SS-EEEEEEETTS-SEEEEE---B-SSSGTTS...HHHHHHHSTTEEEEEEEETT CS
   Dynamin_N  83 nkgiskkvillkilsllvkgltlvDlPGldsvnkrdq...elvkeyikkadiilavtsan 139
                  k+ +k  ++ k  +     l++vD  Gl + + + +   +     i+++d+i++v+ + 
  KOO23232.1  50 DKRLDKLAEINKSVKKVPTSLSFVDIAGLVEGASKGEglgNQFLANIRECDAIVHVVRCF 109
                 555555666667777778899**********9999998999999999*********9875 PP

  == domain 3  score: -1.3 bits;  conditional E-value: 0.77
                 B--CHHHHHHHHHHHHHHHTSSSS--SS-EEEE CS
   Dynamin_N  62 ledfsevreeieketekiagankgiskkvillk 94 
                 l d+s+v++ +ek+++ ++g+++g  +++  l+
  KOO23232.1 136 LADLSQVEKRLEKARKDAKGKKEGAAEELAALE 168
                 568899999999999999998888877765554 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.6   0.0    0.0012       3.2     104     126 ..       8      30 ..       5      35 .. 0.80
   2 ?    3.7   0.0      0.02        51      56     101 ..     213     258 ..     198     311 .. 0.79

  Alignments for each domain:
  == domain 1  score: 7.6 bits;  conditional E-value: 0.0012
                  EECSTTSSHHHHHHHHCTT---- CS
  RsgA_GTPase 104 lvGqSGvGKStLinallpelelk 126
                  +vG   vGKStL nal++  +++
   KOO23232.1   8 IVGLPNVGKSTLFNALMGGPQAQ 30 
                  577778**********9975554 PP

  == domain 2  score: 3.7 bits;  conditional E-value: 0.02
                  GGG--HHHHHHHHHHHHHHTTSEEEE--TTTHTTHHHHHHHCTTSE CS
  RsgA_GTPase  56 iDlleeeeeleelkeelealgyevllvsaktkegleelkellkdkt 101
                   Dl++ ++ +++++++  + g +v++vsa+ +++l+el +  ++ +
   KOO23232.1 213 SDLASGNDMVDRVRAQADKEGAKVVVVSAQVEAELAELDADEREAF 258
                  6888888889999999999999999999999999999887655554 PP

>> DUF1471  Protein of unknown function (DUF1471)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   0.1   0.00032      0.82      15      41 ..     217     243 ..     210     250 .. 0.86
   2 ?   -1.2   0.3      0.81   2.1e+03      17      33 ..     330     346 ..     322     347 .. 0.83

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 0.00032
                 SHHHHHHHHHHHHHHCT-SEEEECCEC CS
     DUF1471  15 spsdledalskkAdekGAkyYrItsar 41 
                 s +d+ d + ++Ad++GAk  ++ ++ 
  KOO23232.1 217 SGNDMVDRVRAQADKEGAKVVVVSAQV 243
                 67899**************98887765 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 0.81
                 HHHHHHHHHHHHHCT-S CS
     DUF1471  17 sdledalskkAdekGAk 33 
                  dl +a s+kA+++ +k
  KOO23232.1 330 ADLVAAGSEKAAKENGK 346
                 689999999*9999887 PP

>> DHR10  Designed helical repeat protein 10 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   2.2   0.00021      0.55      86     116 ..     138     168 ..     131     169 .. 0.90
   2 ?   -0.2   0.3      0.39   9.9e+02      31      58 ..     229     256 ..     224     258 .. 0.68

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.00021
       DHR10  86 qlenaeeklerlreqaeekreaakarleelr 116
                  l++ e++le++r++a+ k+e a ++l++l+
  KOO23232.1 138 DLSQVEKRLEKARKDAKGKKEGAAEELAALE 168
                 6899***********************9997 PP

  == domain 2  score: -0.2 bits;  conditional E-value: 0.39
       DHR10  31 vekdlrsciklleeieaelakleeakkk 58 
                 ++k+ ++++ +  ++eaela+l+  +++
  KOO23232.1 229 ADKEGAKVVVVSAQVEAELAELDADERE 256
                 5566667777777777777777766665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (368 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       779  (0.0434492); expected 358.6 (0.02)
Passed bias filter:                      573  (0.0319594); expected 358.6 (0.02)
Passed Vit filter:                        74  (0.00412739); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.52u 0.26s 00:00:00.78 Elapsed: 00:00:00.42
# Mc/sec: 2635.68
//
Query:       KOO23233.1  [L=493]
Description: 5 -nucleotidase or metallophosphoesterase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.5e-05   25.3   0.1    2.6e-05   24.6   0.1    1.4  1  EF-hand_7  EF-hand domain pair
    9.6e-05   21.7   0.1      0.055   13.0   0.0    2.4  2  EF-hand_5  EF hand
    0.00016   21.0   0.1      0.025   14.1   0.1    2.5  2  EF-hand_1  EF hand
      0.002   17.9   0.0        1.4    9.1   0.0    2.5  2  EF-hand_6  EF-hand domain
     0.0087   15.9   0.1      0.023   14.5   0.1    1.7  1  EF-hand_8  EF-hand domain pair
  ------ inclusion threshold ------
       0.16   12.3   0.1       0.29   11.5   0.1    1.5  1  EF-hand_9  EF-hand domain


Domain annotation for each model (and alignments):
>> EF-hand_7  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.6   0.1   8.8e-09   2.6e-05       6      70 ..     395     457 ..     392     458 .. 0.88

  Alignments for each domain:
  == domain 1  score: 24.6 bits;  conditional E-value: 8.8e-09
   EF-hand_7   6 eaFkelDtdgdgyldkeellrllrkifqgagegsklsdeelellfkef.DtdkdGvisfdEFlkly 70 
                 ++ ++lD d +g +++++++ +l+      g  ++ ++++l ++++ f D d+dG++++ +F++++
  KOO23233.1 395 RRLEALDLDASGDISVQDIHTALQVVV---GLSVDADQQSLATFIHSFaDADGDGKVTLADFETFC 457
                 56789*************999888755...8888878899*******99**************997 PP

>> EF-hand_5  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.2   0.0    0.0025       7.5       5      20 ..     397     412 ..     395     417 .. 0.87
   2 !   13.0   0.0   1.8e-05     0.055       8      24 ..     440     456 ..     438     457 .. 0.91

  Alignments for each domain:
  == domain 1  score: 6.2 bits;  conditional E-value: 0.0025
                 HHHH-SS-SSCE-HHH CS
   EF-hand_5   5 FqaiDlNgDGkIskeE 20 
                 ++a+Dl+ +G Is++ 
  KOO23233.1 397 LEALDLDASGDISVQD 412
                 589**********985 PP

  == domain 2  score: 13.0 bits;  conditional E-value: 1.8e-05
                 H-SS-SSCE-HHHHHHH CS
   EF-hand_5   8 iDlNgDGkIskeELktl 24 
                 +D++gDGk++   ++t+
  KOO23233.1 440 ADADGDGKVTLADFETF 456
                 8************9997 PP

>> EF-hand_1  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.4   0.0     0.011        33       7      26 ..     398     417 ..     394     420 .. 0.86
   2 !   14.1   0.1   8.4e-06     0.025       8      28 ..     439     459 ..     435     460 .. 0.88

  Alignments for each domain:
  == domain 1  score: 4.4 bits;  conditional E-value: 0.011
                 HHHTTTSSSEEEHHHHHHHH CS
   EF-hand_1   7 refDkDgdGkIdfeEfkell 26 
                 + +D D +G I+ ++  ++l
  KOO23233.1 398 EALDLDASGDISVQDIHTAL 417
                 679***********998887 PP

  == domain 2  score: 14.1 bits;  conditional E-value: 8.4e-06
                 HHTTTSSSEEEHHHHHHHHHH CS
   EF-hand_1   8 efDkDgdGkIdfeEfkellkk 28 
                  +D DgdGk+++ +f +++++
  KOO23233.1 439 FADADGDGKVTLADFETFCAE 459
                 58*************999876 PP

>> EF-hand_6  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.0   0.0    0.0043        13       8      27 ..     399     418 ..     395     424 .. 0.90
   2 !    9.1   0.0   0.00046       1.4      10      26 ..     441     457 ..     436     461 .. 0.87

  Alignments for each domain:
  == domain 1  score: 6.0 bits;  conditional E-value: 0.0043
   EF-hand_6   8 lfDkdgdGkidaeElrkalr 27 
                 ++D d +G i+ +++  al+
  KOO23233.1 399 ALDLDASGDISVQDIHTALQ 418
                 79**************9997 PP

  == domain 2  score: 9.1 bits;  conditional E-value: 0.00046
   EF-hand_6  10 DkdgdGkidaeElrkal 26 
                 D dgdGk++ +++  ++
  KOO23233.1 441 DADGDGKVTLADFETFC 457
                 99***********8765 PP

>> EF-hand_8  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.5   0.1   7.8e-06     0.023       2      48 ..     405     453 ..     404     457 .. 0.88

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 7.8e-06
   EF-hand_8   2 kgkItreelrril.rilglkkglseee...vdilfrefDtdgdGkisfeEF 48 
                 +g I++++ +++l  ++gl   + +++   ++ + + +D dgdGk+++ +F
  KOO23233.1 405 SGDISVQDIHTALqVVVGLS--VDADQqslATFIHSFADADGDGKVTLADF 453
                 799**********9999999..66665568899999**************9 PP

>> EF-hand_9  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.1   9.7e-05      0.29       5      62 ..     398     460 ..     394     464 .. 0.74

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 9.7e-05
   EF-hand_9   5 evcDtqktGrVpvsrlidyLravtaqdpees...eLeela...kelDPdgedasvdldtflrvm 62 
                 e+ D +  G + v+++ + L+ v +  + ++    L ++    + +D dg+  + d++tf++ m
  KOO23233.1 398 EALDLDASGDISVQDIHTALQVVVG-LSVDAdqqSLATFIhsfADADGDGKVTLADFETFCAEM 460
                 789******************9998.66666122555554222345777778889999999988 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (493 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       308  (0.0171789); expected 358.6 (0.02)
Passed bias filter:                      297  (0.0165653); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.49u 0.26s 00:00:00.75 Elapsed: 00:00:00.41
# Mc/sec: 3588.42
//
Query:       KOO23234.1  [L=1086]
Description: cre-klp-4 protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.5e-98  329.8   0.0    2.6e-98  329.0   0.0    1.4  1  Kinesin        Kinesin motor domain
    6.1e-17   61.9   0.0    1.3e-16   60.8   0.0    1.6  1  Microtub_bd    Microtubule binding
    9.9e-13   48.1   0.0    3.1e-12   46.5   0.0    1.9  1  PARP           Poly(ADP-ribose) polymerase catalytic domain
  ------ inclusion threshold ------
       0.24   11.1   4.5        2.1    8.0   1.7    2.8  2  RPW8           Arabidopsis broad-spectrum mildew resistance p
        2.7    8.3   5.0        9.3    6.5   0.0    3.3  4  AAA_22         AAA domain
          8    6.8  21.8       0.63   10.4   0.2    3.8  4  YlqD           YlqD protein
        9.2    6.0  20.8         14    5.4   2.6    2.8  2  MAT1           CDK-activating kinase assembly factor MAT1


Domain annotation for each model (and alignments):
>> Kinesin  Kinesin motor domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  329.0   0.0    1e-101   2.6e-98       1     333 []      17     365 ..      17     365 .. 0.90

  Alignments for each domain:
  == domain 1  score: 329.0 bits;  conditional E-value: 1e-101
                 EE-SSSHHHHTTTTEBCEEEEC..TCTCEEEEEEEEECTTSCEEEEESEEEETTS-.......HHHHHHHHHHHHHHHHHTTSEEEEEEEESTTSSHHH CS
     Kinesin   1 RvRplnekekeeeeeeevevee..ekkeeekkskkenkeeeekkfkFdkvfdeeat.......qeevyeetakplvesvleGynatifaYGqtgsGKTy 90 
                 R+Rp +++++++e++ +v++++  e  ++ k    + ++ ee++f Fd++f++ +        q+evye + ++l+++ l+Gyna +faYG+tgsGKT+
  KOO23234.1  17 RCRPWTREKTADEQKLIVKMQNedEGVPNGKVVVWHPQTGEEQEFLFDHAFWSFDPadahhrsQKEVYEALGRRLLDDGLQGYNAVLFAYGHTGSGKTF 115
                 9*****999999999999998732223344445567789999********9984444556777************************************ PP

                 HHTBCTTTSBSHHHHHHHHHHHHHHH....CTTTHEEEEEEEEEEEEEETTEEEETTSTTT..TSTSSEBEEEECTTSCCEEETTS--EEESSHHHHHH CS
     Kinesin  91 TmegkeeeeeGiipraleelFesikk....ekeekekefsvkvsylEiYneeiyDLLeskk..skkkkklkiredskkgevyvkgltevevksaeevle 183
                 +m g+  +e+Gi+p+++eelF + ++    ++++++ +++++vsylEiY+e+++DLL  +   + ++k+lk+re++k g  yv+gl+ v v+  e++ +
  KOO23234.1 116 SMAGT-ADEPGITPQFIEELFVRRTAlvgaSTADERVTIKLHVSYLEIYMEKLRDLLVADGgtDANAKPLKVREHKKLG-PYVEGLKAVAVDGPEQMAQ 212
                 ****9.999************875541111445557889999****************99877888889********98.******************* PP

                 HHHHHHHHHTSTTSSCTSHHCCSEEEEEEEEEEEETTTTTC.EE...EEEEEEEEEEEEECCCHHHHSSTCHHHHHHHHHHHHHHHHHHHHHHHHHHTC CS
     Kinesin 184 llekgeknrkvaetklneeSSRSHavftitleqknlkeete.ek...vkisklnLvDLAGsErasktgaaegerlkEaaniNkSLlaLgrvisaLaekk 278
                 l+e+g+ +r+vaet++n++SSRSHa+f + l q++l++++e ++     +sk+ LvDLAGsEra++t+a +g++lkE+++iNkSLl+L+ vi++Lae  
  KOO23234.1 213 LMEEGDGRRRVAETAMNATSSRSHAMFIVSLLQARLQRNSEgQEvvtEVRSKIYLVDLAGSERAKRTEA-QGQQLKEGGAINKSLLTLSMVIRKLAEGA 310
                 **********************************9998888544777889******************5.7999************************* PP

                 CTSTSCGGGSHHHHHTGGGHSSSSEEEEEEEE-TBGGGHHHHHHHHHHHHHHCTT CS
     Kinesin 279 kskhipYRdSkLTrlLqdsLgGnsktlmivtvspssenleetlstlkfaerakei 333
                 ++ h+p RdS LT+lL+d+LgGns+ +m++ ++p + ++eetlstl++a+ ak+i
  KOO23234.1 311 EAGHVPHRDSMLTWLLKDCLGGNSRAAMLAAITPGAADYEETLSTLRYAASAKKI 365
                 *****************************************************97 PP

>> Microtub_bd  Microtubule binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.8   0.0   5.2e-20   1.3e-16      23     149 .]      17     171 ..       6     171 .. 0.77

  Alignments for each domain:
  == domain 1  score: 60.8 bits;  conditional E-value: 5.2e-20
                  EEEEEEECCCS-T..EEEETTT.................TTTEEEE-SEEEECTT.......HCCCCCCCC.HHHHHHHHTT--EEEEEEES...... CS
  Microtub_bd  23 Rvfarvrpelesek.akikfpe..............eekkkkkefsFdrvfeses.......eqeevfeei.sqlvqsaldgynvcifaygqTGsGKt 97 
                  R+   +r+++ +e+ + +k+++               ++ +++ef Fd+ f s         +q+ev+e + + l++  l+gyn  +fayg+TGsGKt
   KOO23234.1  17 RCRPWTREKTADEQkLIVKMQNedegvpngkvvvwhPQTGEEQEFLFDHAFWSFDpadahhrSQKEVYEALgRRLLDDGLQGYNAVLFAYGHTGSGKT 114
                  34334444444433555555533467778888999877899********9976555556778999999998568************************ PP

                  ..........ST-HCHHHHHHHHH.....HCCTSCCCCEEEEEEEEEEESS-EEETT CS
  Microtub_bd  98 yTmegeeeeagmipraveeifeti.....selkekgwkyeielqfveiynekvqDlL 149
                  + m g+ +e+g +p+ +ee+f        +++ ++  + +++++++eiy ek++DlL
   KOO23234.1 115 FSMAGTADEPGITPQFIEELFVRRtalvgASTADERVTIKLHVSYLEIYMEKLRDLL 171
                  ********************9755111123456788999999**************8 PP

>> PARP  Poly(ADP-ribose) polymerase catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.5   0.0   1.2e-15   3.1e-12      21     194 ..     851    1083 ..     842    1084 .. 0.80

  Alignments for each domain:
  == domain 1  score: 46.5 bits;  conditional E-value: 1.2e-15
                  EEEEEEEEEEEEETTHHHHCGCCGG.....................................SS-EEEEEEEE-GGGHHHHHHH-S--S-TTS-GGG CS
        PARP   21 yklkileifrvqregeaerfqekkk.....................................lrnrrlLfHGsrltnvasilsqGLriappeapvtG 80  
                  +kl++++ +r++++ + erf++ ++                                     ++ + +L HG++ +++ ++l+ GL      +  +G
  KOO23234.1  851 TKLELQRAWRIEHPRLYERFRTGRSkvgndververcntykapstnieladlakkmpgsvdaQSHEHYLLHGTKPEVLPDLLNDGL-----NERFSG 942 
                  58899999********9999999888888888888888887777777666666666666655555*********************.....677889 PP

                  STTSSSEEEBSSHHHHHGGG--BSSS-EEE............................EEEEEEE--SEEEESS--TGCCGGTT-SEEEE-EEEEEG CS
        PARP   81 ymfGkGiYfAddaskSanYcktsekkgsgl............................llLaeValGdikeltkadylekakkgkksvkgkgktepe 149 
                    fG+G+Y+A+da+k  +Y++++ + +  l                             l+++ValG    + ++d  ++  +   sv++  ++e  
  KOO23234.1  943 GLFGNGTYLAEDAAKIDQYVFPDPEPE--LnkdfsalhkllypaggahpgttsdpvfyCLVCRVALGLP--VRTQDAKQNMDNTSRSVWAVEDREL- 1034
                  9********************943332..22355999*******************************4..4455555666677788999888888. PP

                  G.EEETT...E--S-EEE-S--SSS.EEE-EEEESSGGGEEEEEEEEEE CS
        PARP  150 sivekdg...vPlgkssatkyesse.leyneyvvydkeqvrlkYLlevk 194 
                   ++++ g   +P ++ s   + + + +  +e +v++ e v+++YL+ +k
  KOO23234.1 1035 ANIDTGGavdPPVRHHSLLAELGPKiMRFREIIVTHGEYVYPEYLIAYK 1083
                  55555667767777774444444447999*****************997 PP

>> RPW8  Arabidopsis broad-spectrum mildew resistance protein RPW8
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.0   1.7   0.00083       2.1      39      86 ..     396     443 ..     375     453 .. 0.84
   2 ?    2.5   0.1     0.042   1.1e+02      51      90 ..     646     685 ..     642     719 .. 0.91

  Alignments for each domain:
  == domain 1  score: 8.0 bits;  conditional E-value: 0.00083
        RPW8  39 stleritPvvkeieklnkeldrpreeieeLkklLekaekLVekcsklk 86 
                 + +e+++  ++e+e+l+++ +  ++e+ +L+ +Le+a++ V +   l+
  KOO23234.1 396 AEIEELRAQLEELERLKDAEEAHEQELLRLRTRLERANQTVMAETALR 443
                 569999********************************9998766665 PP

  == domain 2  score: 2.5 bits;  conditional E-value: 0.042
        RPW8  51 ieklnkeldrpreeieeLkklLekaekLVekcsklkrynv 90 
                 i +l+++++  ++ i++ ++ L+ ae  V++ ++ + +++
  KOO23234.1 646 ITQLQEQSNAANKRIKDSENNLRAAEVAVRAAAQAQARSL 685
                 789***************************9999887765 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.5   0.0    0.0036       9.3       7      29 ..     102     124 ..      96     178 .. 0.79
   2 ?   -2.6   0.1       2.4   6.1e+03      78      85 ..     401     408 ..     365     436 .. 0.57
   3 ?    1.5   0.8      0.13   3.3e+02      29      71 ..     611     665 ..     598     695 .. 0.67
   4 ?   -3.5   0.0       4.6   1.2e+04      40      89 ..     885     939 ..     865     959 .. 0.67

  Alignments for each domain:
  == domain 1  score: 6.5 bits;  conditional E-value: 0.0036
      AAA_22   7 ilvvtGesGtGKTtllrrlleql 29 
                 +l+ +G++G+GKT++++  +++ 
  KOO23234.1 102 VLFAYGHTGSGKTFSMAGTADEP 124
                 67889**********98766665 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 2.4
      AAA_22  78 llealeqa 85 
                 l+++le+ 
  KOO23234.1 401 LRAQLEEL 408
                 22222221 PP

  == domain 3  score: 1.5 bits;  conditional E-value: 0.13
      AAA_22  29 ldeeakaee...erpevvfvtlpsstsskdllrellralglelka.........e 71 
                 l+++++a+    +r +++   ++s+++ + ++++l  +l+++ +a         +
  KOO23234.1 611 LEQAKEAAAsveQRLRQAQASAASDGDAAAVREALITQLQEQSNAankrikdseN 665
                 33333333356789999999999999**************999997776555331 PP

  == domain 4  score: -3.5 bits;  conditional E-value: 4.6
      AAA_22  40 pevvfvtlpsst.sskdllrellralglelka...erlsseell.ealeqalrar 89 
                  ++ ++++ps + +++dl++++   ++ + ++     +++ e+l ++l++ l++r
  KOO23234.1 885 ERCNTYKAPSTNiELADLAKKMPGSVDAQSHEhylLHGTKPEVLpDLLNDGLNER 939
                 3444788888888888888888888887777777744444444446666666665 PP

>> YlqD  YlqD protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.2   0.00025      0.63      56     100 ..     374     422 ..     326     427 .. 0.71
   2 ?    0.9   1.1      0.21   5.5e+02      53      87 ..     595     629 ..     576     634 .. 0.73
   3 ?    5.1   5.7     0.011        29      17     104 ..     641     731 ..     638     744 .. 0.86
   4 ?   -2.8   0.0       3.1   7.9e+03      75      88 ..     765     778 ..     738     789 .. 0.47

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00025
        YlqD  56 q....qieeiqeqvekekserlekkkqllqqleqvqkLelgsevkqgqv 100
                 +     i+e+++++e++ s  ++++++l++qle++++L+  +e +++++
  KOO23234.1 374 DpiskLIAELKAEMEARSSAEKAEIEELRAQLEELERLKDAEEAHEQEL 422
                 2455678999********************************9999876 PP

  == domain 2  score: 0.9 bits;  conditional E-value: 0.21
        YlqD  53 qsaqqieeiqeqvekekserlekkkqllqqleqvq 87 
                 +++ + e+++e ++ e ++ +e+ ++++q+l+q q
  KOO23234.1 595 KNELELEQAKEAAKYELEQAKEAAASVEQRLRQAQ 629
                 34447778888888888888888888888888776 PP

  == domain 3  score: 5.1 bits;  conditional E-value: 0.011
        YlqD  17 lKeelqqqlqaqieqldkelqqLefqakrlikeikkqsaq...qieeiqeqvekekserlekkkqllqqleqvqkLelgsevkqgqveslv 104
                 ++e l++qlq+q ++++k ++  e +++ ++  ++   ++   + e++  qv+    +++   +++ q  +++ +++++s + q +++s+v
  KOO23234.1 641 VREALITQLQEQSNAANKRIKDSENNLRAAEVAVRAAAQAqarSLESAAVQVSDAVGQLHRFTSEIVQIQSEIVTINVQSRLLQSELDSYV 731
                 68999999999999999999999999988766655443333448889999999***********************************997 PP

  == domain 4  score: -2.8 bits;  conditional E-value: 3.1
        YlqD  75 kkkqllqqleqvqk 88 
                   ++l+++ +qv+k
  KOO23234.1 765 HEARLQDKRQQVDK 778
                 22222222333222 PP

>> MAT1  CDK-activating kinase assembly factor MAT1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.4   2.6    0.0056        14     127     192 ..     361     426 ..     347     445 .. 0.83
   2 ?    5.1  10.4    0.0072        18      89     185 ..     601     699 ..     590     716 .. 0.70

  Alignments for each domain:
  == domain 1  score: 5.4 bits;  conditional E-value: 0.0056
        MAT1 127 akeelideLatsskdaeeiiekvkkkakkkkssekekleelnkelkkkatkfssgikfkesllpvp 192
                 + ++++++   ++ + +++i++ k+++++++s+ek + eel+ +l++ +  + ++  ++++ll ++
  KOO23234.1 361 SAKKIVNRAVINRDPISKLIAELKAEMEARSSAEKAEIEELRAQLEELERLKDAEEAHEQELLRLR 426
                 567899999999999***************9***********999999988888877777766655 PP

  == domain 2  score: 5.1 bits;  conditional E-value: 0.0072
        MAT1  89 kqeeeeleelee..lekeekeekrkeekqeeeeekekkekakeelideLatsskdaeeiiekvkkkakkkkssekekleelnkelkkkatkfssgikfk 185
                 +q +e+ +  +e   e   + e+r  ++q+ + +    +  +e+li +L+++s+ a++ i+ ++++ ++ + + + ++++++++l++ a + s ++ + 
  KOO23234.1 601 EQAKEAAKYELEqaKEAAASVEQRLRQAQASAASDGDAAAVREALITQLQEQSNAANKRIKDSENNLRAAEVAVRAAAQAQARSLESAAVQVSDAVGQL 699
                 333333333333003334445566666777777777888999***********************9999988888888888999999999988877655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1086 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1710  (0.0953762); expected 358.6 (0.02)
Passed bias filter:                      523  (0.0291706); expected 358.6 (0.02)
Passed Vit filter:                        74  (0.00412739); expected 17.9 (0.001)
Passed Fwd filter:                        25  (0.00139439); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.98u 0.29s 00:00:01.27 Elapsed: 00:00:00.46
# Mc/sec: 7053.54
//
Query:       KOO23235.1  [L=313]
Description: aspartoacylase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.5e-44  152.3   0.0    1.8e-44  152.0   0.0    1.0  1  AstE_AspA      Succinylglutamate desuccinylase / Aspartoacyla
  ------ inclusion threshold ------
      0.025   14.0   0.0      0.063   12.7   0.0    1.6  2  Peptidase_M99  Carboxypeptidase controlling helical cell shap


Domain annotation for each model (and alignments):
>> AstE_AspA  Succinylglutamate desuccinylase / Aspartoacylase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  152.0   0.0     2e-48   1.8e-44       3     287 ..       3     293 ..       1     296 [. 0.91

  Alignments for each domain:
  == domain 1  score: 152.0 bits;  conditional E-value: 2e-48
                 -EEEEEE-SSTT-HHHHHHHHHHHHHHHCCCESCCEEEEEESSHHHHHCTSSSSSTT-S-CTTTTTCCCCC.SSTCHHHHHHHHHHHHHHHCHCTC.CC CS
   AstE_AspA   3 pkvlisAGvHGnElaGvellrqllkqleeadilgeitlvplaNppAiaagsRyipidredLNRaFpgrslg.rsldealrateaerladalfaaal.pe 99 
                 ++v+i++G+HGnE +Gv l+++++ ++e  +  ++ t v+l N++ i  ++Ry++   ed+NR+F + +l   +++ +l+a++a++l+  ++++++   
  KOO23235.1   3 KRVFITGGTHGNEACGVVLAKHFMASPELFSGFSFDTTVMLTNVASIGTNTRYVE---EDMNRCFFKADLDdPTKTATLEARRAKELNAVFGPKGTsAA 98 
                 89*****************************************************...*******999999899************************* PP

                 GCEEEEEEEESSTBCCSSEEEE---SSHHHH.HHHHHHTTTSEEEEEESS--SSHHHHHHHHCTSEEEEEEEES...TTTTCCHHCCHHHHHHHHHHHH CS
   AstE_AspA 100 adivlDLHtgtrglkhllfaeadiaeaqlqs.lallkalglpavllldekesagfletaaeelgalaftlElGga..grlgaedisrtakgvlnvlahi 195
                 ad+++DLH++t++ +++l+  ++++e      +a+l al++ + ++  ++ +a   +  + ++g+ + t E+G++  g+++    ++t+++vl+ l+++
  KOO23235.1  99 ADFIIDLHNTTAATGVALMM-SPTDELGH-AiAAHLIALDPSVKVCNWNATQA--DWPMLPSVGKHGMTFEVGPVpwGVVDGAVYKQTRRLVLAALDYV 193
                 ****************9998.66655433.35999999999998865555555..8******************************************* PP

                 CTCHTT.-.....SCC.CEEEEEEEEEEGGSCCCSSCSEEECCCCSTTTTETCTEEEETTEEE.EECTSTEEEEESSSSEE....EESCCTSCCTTTTE CS
   AstE_AspA 196 gvvagq.e.....avepaklyrvlreldeprdiraeeaGlvefkvklgddveagellakalvl.dslggekvelrapqdgv....ivfineaalvekga 283
                 ++++         +   +++++++r++d+prd ++e aG++++++   + ++ g l  + + + + +g+ ++ ++ap+++v    ++fineaa++ek++
  KOO23235.1 194 EAHNAAlArdgpwSSSTVQVHSFVRSVDYPRDASGELAGVIHPQL---QGRDFGRLARGDPAFlALDGQTTIPYTAPEEEVeelfPFFINEAAYYEKKT 289
                 ****9987899998888***************************9...99**********9982456667889***776655555************** PP

                 EEEE CS
   AstE_AspA 284 alvk 287
                 a+++
  KOO23235.1 290 AFML 293
                 **98 PP

>> Peptidase_M99  Carboxypeptidase controlling helical cell shape catalytic
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0     7e-06     0.063      40     106 ..       6      74 ..       2     109 .. 0.86
   2 ?   -1.5   0.0      0.16   1.4e+03     151     188 ..     100     138 ..      79     154 .. 0.69

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 7e-06
                    EEE--SSTT-HHHHHHHHHHHHHEEE-SSEEE..EES-STHHHHHTT-S-TTS-GGG-SSS--TTSTTH CS
  Peptidase_M99  40 lllagiqgdepggfnaanlflmhyevkkglve..vvpvlnkpsilrnhrglyddmnrkfaaldkndpey 106
                    ++  g  g+e  g   a+ f+   e+  g      v   n  si  n r + +dmnr f   d +dp  
     KOO23235.1   6 FITGGTHGNEACGVVLAKHFMASPELFSGFSFdtTVMLTNVASIGTNTRYVEEDMNRCFFKADLDDPTK 74 
                    5667899********************99875226677799***********************99975 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 0.16
                    EEEESSS--TTSSS--HH.HHHHHHHHHHHTT-SSGGG- CS
  Peptidase_M99 151 csiidqdevkgakfpell.kiadnviesinahllspiee 188
                     +iid ++ ++a    l+ + +d+  + i ahl+     
     KOO23235.1 100 DFIIDLHNTTAATGVALMmSPTDELGHAIAAHLIALDPS 138
                    488998888888766654156888888999999765444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (313 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       300  (0.0167327); expected 358.6 (0.02)
Passed bias filter:                      289  (0.0161191); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.42u 0.24s 00:00:00.65 Elapsed: 00:00:00.39
# Mc/sec: 2403.60
//
Query:       KOO23236.1  [L=273]
Description: hypothetical protein Ctob_004738 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (273 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       206  (0.0114898); expected 358.6 (0.02)
Passed bias filter:                      194  (0.0108205); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.41u 0.26s 00:00:00.67 Elapsed: 00:00:00.41
# Mc/sec: 2017.01
//
Query:       KOO23237.1  [L=312]
Description: hypothetical protein Ctob_004739 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.043   13.9   0.0      0.069   13.2   0.0    1.4  1  DUF4267   Domain of unknown function (DUF4267)


Domain annotation for each model (and alignments):
>> DUF4267  Domain of unknown function (DUF4267)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.0   3.9e-06     0.069      19      59 ..     266     305 ..     213     311 .. 0.85

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 3.9e-06
     DUF4267  19 aasFGlppdssvkdsaaanalialkGvRdlalGlallvlsl 59 
                 +++ ++p + +  ++a+++++++ +G+R+l+++l+ll+l++
  KOO23237.1 266 CRTLEVPEE-PIVAKAKDEPVVPRLGMRELMIALLLLALAV 305
                 444555543.447999**********************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (312 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       468  (0.026103); expected 358.6 (0.02)
Passed bias filter:                      323  (0.0180155); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.25s 00:00:00.69 Elapsed: 00:00:00.40
# Mc/sec: 2313.77
//
Query:       KOO23238.1  [L=464]
Description: serine threonine-protein phosphatase 2a regulatory subunit b subunit gamma [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.1e-10   41.8   0.2     0.0094   16.4   0.0    5.0  5  EF-hand_7     EF-hand domain pair
    4.2e-07   29.0   0.1       0.12   11.9   0.0    5.2  5  EF-hand_1     EF hand
    7.6e-07   28.6   2.6      0.034   14.1   0.0    5.5  5  EF-hand_6     EF-hand domain
    0.00089   18.7   4.3       0.74    9.4   0.1    4.0  4  EF-hand_5     EF hand
     0.0032   17.3   0.4         27    4.7   0.1    4.9  5  EF-hand_8     EF-hand domain pair
  ------ inclusion threshold ------
       0.02   14.8   0.0      0.044   13.7   0.0    1.5  1  SCA7          SCA7, zinc-binding domain
      0.024   14.9   0.1        3.2    8.1   0.0    2.6  2  SPARC_Ca_bdg  Secreted protein acidic and rich in cysteine Ca
       0.24   11.7   2.0       0.88    9.9   0.2    2.4  2  DUF3350       Domain of unknown function (DUF3350)


Domain annotation for each model (and alignments):
>> EF-hand_7  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.2   0.0   0.00071       1.6      39      69 ..      96     132 ..      65     134 .. 0.81
   2 ?    1.3   0.0      0.21   4.7e+02      55      70 ..     155     170 ..     147     171 .. 0.80
   3 !    8.2   0.0    0.0015       3.5       9      30 ..     184     205 ..     176     271 .. 0.78
   4 !   16.4   0.0   4.2e-06    0.0094       5      69 ..     285     381 ..     281     383 .. 0.88
   5 ?    2.2   0.0      0.11   2.5e+02       7      53 ..     361     411 ..     355     424 .. 0.72

  Alignments for each domain:
  == domain 1  score: 9.2 bits;  conditional E-value: 0.00071
   EF-hand_7  39 sklsdeelellfkef......DtdkdGvisfdEFlkl 69 
                   ls+eelell++ +       +++d +i++d+F++ 
  KOO23238.1  96 LTLSREELELLWRLLkrhaspPLTSDERINYDDFCQV 132
                 56789******************************96 PP

  == domain 2  score: 1.3 bits;  conditional E-value: 0.21
   EF-hand_7  55 tdkdGvisfdEFlkly 70 
                  d+ G+is+ +F ++ 
  KOO23238.1 155 PDSHGRISLLDFFQWA 170
                 68889*******9997 PP

  == domain 3  score: 8.2 bits;  conditional E-value: 0.0015
   EF-hand_7   9 kelDtdgdgyldkeellrllrk 30 
                  ++D d dg l++ el++ +++
  KOO23238.1 184 SSFDADADGTLTEKELEQWIEA 205
                 5678888888888887776665 PP

  == domain 4  score: 16.4 bits;  conditional E-value: 4.2e-06
   EF-hand_7   5 keaFkelDtdgdgyldkeellr.........llrkifqga.......................gegsklsdeelellfkefDtdkdGvisfdEFlkl 69 
                 +  + elD d++g+l+ +el r         ++++ifq                          ++ k ++e+l ++++ +D  k G ++  + + +
  KOO23238.1 285 YADYLELDEDQNGMLSAQELSRyrgggltsvFIERIFQECqtyrnpqtrqseidyksyldfvlATTYKGTPESLSYFLRLLDIQKVGGLTALDVKIF 381
                 555779*********************99998888888779999999999999999*99999999999999************99998887776655 PP

  == domain 5  score: 2.2 bits;  conditional E-value: 0.11
   EF-hand_7   7 aFkelDtdgdgyldkeellrllrkifqga....gegsklsdeelellfkef 53 
                   ++lD  + g l+  +++ ++r+  +++    +e++   d+  +++f+++
  KOO23238.1 361 FLRLLDIQKVGGLTALDVKIFFRAVVHKFaefgDEANCEVDDVKDEIFDMV 411
                 568899999999999999999998888888887444444444445666665 PP

>> EF-hand_1  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.0       2.1   4.6e+03      16      27 ..      97     108 ..      97     110 .. 0.80
   2 ?    2.2   0.0     0.071   1.6e+02      14      25 ..     121     132 ..     119     136 .. 0.83
   3 ?   -2.0   0.0       1.6   3.6e+03      12      26 ..     156     170 ..     155     172 .. 0.79
   4 !   11.9   0.0   5.5e-05      0.12       8      28 ..     185     205 ..     183     206 .. 0.89
   5 !    7.6   0.0    0.0014       3.1       8      23 ..     290     305 ..     288     307 .. 0.90

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 2.1
                 EEEHHHHHHHHH CS
   EF-hand_1  16 kIdfeEfkellk 27 
                 ++++eE+  l++
  KOO23238.1  97 TLSREELELLWR 108
                 5899***99887 PP

  == domain 2  score: 2.2 bits;  conditional E-value: 0.071
                 SSEEEHHHHHHH CS
   EF-hand_1  14 dGkIdfeEfkel 25 
                 d +I++++f+++
  KOO23238.1 121 DERINYDDFCQV 132
                 779*******97 PP

  == domain 3  score: -2.0 bits;  conditional E-value: 1.6
                 TSSSEEEHHHHHHHH CS
   EF-hand_1  12 DgdGkIdfeEfkell 26 
                 D  G+I++ +f ++ 
  KOO23238.1 156 DSHGRISLLDFFQWA 170
                 66799**99998876 PP

  == domain 4  score: 11.9 bits;  conditional E-value: 5.5e-05
                 HHTTTSSSEEEHHHHHHHHHH CS
   EF-hand_1   8 efDkDgdGkIdfeEfkellkk 28 
                  fD D dG+++ +E+ +++++
  KOO23238.1 185 SFDADADGTLTEKELEQWIEA 205
                 59*************999876 PP

  == domain 5  score: 7.6 bits;  conditional E-value: 0.0014
                 HHTTTSSSEEEHHHHH CS
   EF-hand_1   8 efDkDgdGkIdfeEfk 23 
                 e+D D++G ++ +E+ 
  KOO23238.1 290 ELDEDQNGMLSAQELS 305
                 78************96 PP

>> EF-hand_6  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.3   0.0     0.089     2e+02       6      27 ..     150     171 ..     147     177 .. 0.88
   2 !   14.1   0.0   1.5e-05     0.034       8      27 ..     185     204 ..     183     207 .. 0.90
   3 !    5.9   0.0    0.0062        14       8      22 ..     290     304 ..     284     307 .. 0.89
   4 ?    0.1   0.0      0.47     1e+03       5      27 ..     361     383 ..     358     390 .. 0.86
   5 ?   -3.4   0.0       5.9   1.3e+04       4      11 ..     441     448 ..     440     448 .. 0.82

  Alignments for each domain:
  == domain 1  score: 2.3 bits;  conditional E-value: 0.089
   EF-hand_6   6 FklfDkdgdGkidaeElrkalr 27 
                 F +f  d  G i+  ++ ++ r
  KOO23238.1 150 FAKFFPDSHGRISLLDFFQWAR 171
                 999**************99876 PP

  == domain 2  score: 14.1 bits;  conditional E-value: 1.5e-05
   EF-hand_6   8 lfDkdgdGkidaeElrkalr 27 
                  fD d dG+++ +El +++ 
  KOO23238.1 185 SFDADADGTLTEKELEQWIE 204
                 59***************987 PP

  == domain 3  score: 5.9 bits;  conditional E-value: 0.0062
   EF-hand_6   8 lfDkdgdGkidaeEl 22 
                 ++D d +G ++a+El
  KOO23238.1 290 ELDEDQNGMLSAQEL 304
                 69************9 PP

  == domain 4  score: 0.1 bits;  conditional E-value: 0.47
   EF-hand_6   5 aFklfDkdgdGkidaeElrkalr 27 
                 + +l+D  + G ++a +++ ++r
  KOO23238.1 361 FLRLLDIQKVGGLTALDVKIFFR 383
                 668889999999******99998 PP

  == domain 5  score: -3.4 bits;  conditional E-value: 5.9
   EF-hand_6   4 eaFklfDk 11 
                  aF ++D+
  KOO23238.1 441 NAFAAYDR 448
                 58****96 PP

>> EF-hand_5  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.0       2.4   5.5e+03      17      24 ..      37      44 ..      37      45 .. 0.82
   2 ?   -0.0   0.1      0.31   7.1e+02      16      24 ..      98     106 ..      97     107 .. 0.81
   3 !    9.4   0.1   0.00033      0.74       7      23 ..     185     201 ..     182     203 .. 0.90
   4 !    7.4   0.0    0.0014       3.1       8      23 ..     291     306 ..     290     307 .. 0.91

  Alignments for each domain:
  == domain 1  score: -2.8 bits;  conditional E-value: 2.4
                -HHHHHHH CS
   EF-hand_5 17 skeELktl 24
                ++eEL +l
  KOO23238.1 37 TREELGKL 44
                69***987 PP

  == domain 2  score: -0.0 bits;  conditional E-value: 0.31
                 E-HHHHHHH CS
   EF-hand_5  16 IskeELktl 24 
                 +s+eEL+ l
  KOO23238.1  98 LSREELELL 106
                 8*****865 PP

  == domain 3  score: 9.4 bits;  conditional E-value: 0.00033
                 HH-SS-SSCE-HHHHHH CS
   EF-hand_5   7 aiDlNgDGkIskeELkt 23 
                  +D++ DG+++  EL++
  KOO23238.1 185 SFDADADGTLTEKELEQ 201
                 69*************86 PP

  == domain 4  score: 7.4 bits;  conditional E-value: 0.0014
                 H-SS-SSCE-HHHHHH CS
   EF-hand_5   8 iDlNgDGkIskeELkt 23 
                 +D ++ G +s++EL +
  KOO23238.1 291 LDEDQNGMLSAQELSR 306
                 79************75 PP

>> EF-hand_8  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.8   0.0     0.047   1.1e+02      40      53 ..     121     134 ..     119     135 .. 0.86
   2 ?    4.7   0.1     0.012        27      27      47 ..     178     198 ..     177     199 .. 0.88
   3 ?   -2.1   0.0       1.6   3.6e+03       5      13 ..     266     274 ..     265     278 .. 0.85
   4 ?    1.7   0.0       0.1   2.3e+02      34      47 ..     290     303 ..     290     307 .. 0.84
   5 ?    0.8   0.0      0.19   4.4e+02       6      34 ..     354     384 ..     354     385 .. 0.90

  Alignments for each domain:
  == domain 1  score: 2.8 bits;  conditional E-value: 0.047
   EF-hand_8  40 dGkisfeEFcvlle 53 
                 d +i++++Fc++ e
  KOO23238.1 121 DERINYDDFCQVSE 134
                 789*******9865 PP

  == domain 2  score: 4.7 bits;  conditional E-value: 0.012
   EF-hand_8  27 evdilfrefDtdgdGkisfeE 47 
                 e +i ++ fD d dG+++ +E
  KOO23238.1 178 ETRIELSSFDADADGTLTEKE 198
                 56788999**********998 PP

  == domain 3  score: -2.1 bits;  conditional E-value: 1.6
   EF-hand_8   5 Itreelrri 13 
                 It +elr++
  KOO23238.1 266 ITSDELRHN 274
                 9*****996 PP

  == domain 4  score: 1.7 bits;  conditional E-value: 0.1
   EF-hand_8  34 efDtdgdGkisfeE 47 
                 e+D+d++G++s  E
  KOO23238.1 290 ELDEDQNGMLSAQE 303
                 68********9776 PP

  == domain 5  score: 0.8 bits;  conditional E-value: 0.19
   EF-hand_8   6 treelrrilrilglkk..glseeevdilfre 34 
                 t+e+l+ +lr+l ++k  gl++ +v i fr+
  KOO23238.1 354 TPESLSYFLRLLDIQKvgGLTALDVKIFFRA 384
                 89999999****999999****999998886 PP

>> SCA7  SCA7, zinc-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.0     2e-05     0.044      10      40 ..     119     149 ..     111     161 .. 0.91

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 2e-05
        SCA7  10 kkkkevdvdkqCGVilpngkpCtRsLtCksH 40 
                 ++++ +++d  C V ++    C+Rs  C sH
  KOO23238.1 119 TSDERINYDDFCQVSEAMPARCSRSFFCASH 149
                 567899************************* PP

>> SPARC_Ca_bdg  Secreted protein acidic and rich in cysteine Ca binding region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.9   0.0     0.028        63      59      86 ..     182     209 ..     163     219 .. 0.85
   2 ?    8.1   0.0    0.0014       3.2      52     109 ..     280     336 ..     254     339 .. 0.82

  Alignments for each domain:
  == domain 1  score: 3.9 bits;  conditional E-value: 0.028
  SPARC_Ca_bdg  59 kFsklDtnsdkvlsksELaplraplvkl 86 
                   + s++D + d++l+++EL++  + l+++
    KOO23238.1 182 ELSSFDADADGTLTEKELEQWIEALIPN 209
                   56789*************9988878775 PP

  == domain 2  score: 8.1 bits;  conditional E-value: 0.0014
  SPARC_Ca_bdg  52 ckepvawkFsklDtnsdkvlsksELaplraplvklehCikpflescDadkdkkislkE 109
                   + e +   + +lD +++++ls +EL+  r     +   i++ +++c ++++ +  ++E
    KOO23238.1 280 YAEMLYADYLELDEDQNGMLSAQELSRYRGG-GLTSVFIERIFQECQTYRNPQTRQSE 336
                   5666777899*****************9994.66778899999999999887766655 PP

>> DUF3350  Domain of unknown function (DUF3350)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   0.2   0.00039      0.88      17      45 ..      19      47 ..       5      48 .. 0.76
   2 ?    0.2   0.1      0.42   9.4e+02      35      44 ..      99     108 ..      71     109 .. 0.84

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.00039
     DUF3350 17 lvallskedsseeekkkrtseelreLWrk 45
                 va   + d+++ee+++ t+eel +LWr+
  KOO23238.1 19 AVAHADALDRTAEERERETREELGKLWRR 47
                4455555589999**************95 PP

  == domain 2  score: 0.2 bits;  conditional E-value: 0.42
     DUF3350  35 tseelreLWr 44 
                 ++eel  LWr
  KOO23238.1  99 SREELELLWR 108
                 799******9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (464 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       441  (0.024597); expected 358.6 (0.02)
Passed bias filter:                      391  (0.0218082); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.54u 0.25s 00:00:00.79 Elapsed: 00:00:00.43
# Mc/sec: 3214.36
//
Query:       KOO23239.1  [L=118]
Description: NHL repeat containing protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.6e-05   24.7   0.1       0.01   15.8   0.0    3.4  3  NHL       NHL repeat
     0.0026   17.0   0.0     0.0034   16.6   0.0    1.2  1  DUF5128   6-bladed beta-propeller
  ------ inclusion threshold ------
       0.21   11.5   0.0        0.3   11.0   0.0    1.2  1  DUF4934   Domain of unknown function (DUF4934)


Domain annotation for each model (and alignments):
>> NHL  NHL repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.0   1.7e-06      0.01      14      28 .]       7      21 ..       3      21 .. 0.90
   2 ?    1.6   0.0     0.056   3.3e+02       1      21 [.      42      61 ..      42      66 .. 0.77
   3 ?    3.2   0.0     0.017     1e+02       9      19 ..      89     100 ..      83     107 .. 0.78

  Alignments for each domain:
  == domain 1  score: 15.8 bits;  conditional E-value: 1.7e-06
                EEEEEECCCTEEEEE CS
         NHL 14 diyVaDsenhrvqvF 28
                 ++VaD+ nhr+ vF
  KOO23239.1  7 LLFVADTSNHRLTVF 21
                689***********9 PP

  == domain 2  score: 1.6 bits;  conditional E-value: 0.056
                BSSEEEEEEETTTEEEEEECC CS
         NHL  1 fnyPhGvavdsnGdiyVaDse 21
                f  P+ va+   G i+Va+ +
  KOO23239.1 42 FHLPSAVAA-ARGYIIVAEKR 61
                567888998.79999999855 PP

  == domain 3  score: 3.2 bits;  conditional E-value: 0.017
                 EE.TTTEEEEEE CS
         NHL   9 vd.snGdiyVaD 19 
                 v  + G ++VaD
  KOO23239.1  89 VRaDEGSVLVAD 100
                 44489******9 PP

>> DUF5128  6-bladed beta-propeller
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   0.0   5.6e-07    0.0034      63      99 ..       6      43 ..       3      66 .. 0.89

  Alignments for each domain:
  == domain 1  score: 16.6 bits;  conditional E-value: 5.6e-07
     DUF5128 63 krifvlDsaknnlfvFd.kkGkfvrkIgaqGeGPgEYl 99
                +++fv D+++ +l vF+  +G+fvr  g+ G  Pg + 
  KOO23239.1  6 ELLFVADTSNHRLTVFNrIDGNFVRTLGRHGVAPGCFH 43
                689**************99************9999765 PP

>> DUF4934  Domain of unknown function (DUF4934)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0     5e-05       0.3      39      71 ..      13      44 ..       5      67 .. 0.73

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 5e-05
     DUF4934 39 sskkqCllfdketGkflasvGhiGedPegysev 71
                +s+++  +f++ +G f++++G  G  P  +  +
  KOO23239.1 13 TSNHRLTVFNRIDGNFVRTLGRHGVAPGCFH-L 44
                3588999*****************9996554.3 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (118 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       238  (0.0132746); expected 358.6 (0.02)
Passed bias filter:                      226  (0.0126053); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.38u 0.24s 00:00:00.62 Elapsed: 00:00:00.41
# Mc/sec: 866.33
//
Query:       KOO23240.1  [L=72]
Description: hypothetical protein Ctob_004736 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (72 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       196  (0.010932); expected 358.6 (0.02)
Passed bias filter:                      111  (0.00619109); expected 358.6 (0.02)
Passed Vit filter:                         5  (0.000278878); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.24s 00:00:00.56 Elapsed: 00:00:00.38
# Mc/sec: 568.58
//
Query:       KOO23241.1  [L=385]
Description: amino acid transporter [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
      1e-49  169.4  12.2    1.2e-49  169.2  12.2    1.1  1  Aa_trans      Transmembrane amino acid transporter protein
    4.9e-06   25.9  13.4      2e-05   23.8  13.4    1.9  1  Trp_Tyr_perm  Tryptophan/tyrosine permease family
  ------ inclusion threshold ------
       0.16   12.2   0.0       0.28   11.4   0.0    1.3  1  Yippee-Mis18  Yippee zinc-binding/DNA-binding /Mis18, centrom


Domain annotation for each model (and alignments):
>> Aa_trans  Transmembrane amino acid transporter protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  169.2  12.2     2e-53   1.2e-49      53     375 ..       2     329 ..       1     359 [. 0.93

  Alignments for each domain:
  == domain 1  score: 169.2 bits;  conditional E-value: 2e-53
    Aa_trans  53 lLvkcsktlasgkrnksYgdlgyrllGpkgkliidlailvqlfGvgvsyliligdllpaifesffdt....lllsnvyfilisaliiipLslipnlskL 147
                 lL++c++      + +s++dl++ ++G++ + +i+++ +v  fG +v+y+i+ gd l+ +++ f  t    +l++ + +++  ++i++pLsl+++ s+L
  KOO23241.1   2 LLADCLEA----TGVASFEDLAEVAFGRWNRRAIGASVFVISFGSAVAYTIALGDILQPFIDVFAAThsmpWLTRDLCLSAFWVVIMLPLSLVKDVSQL 96 
                 78889884....59*************************************************99888899999************************* PP

    Aa_trans 148 sylSllalvsslyy.ivilvlvvaelvklelkgvseetv.kkasklkglflaigiivFAftghavlleiqnelkdpskfkkmtkvlllsiilatvlyil 244
                 +++Sl+a+++++y+ i+++v++ ++  ++  k+++e  + +  +  +g++++i+ i+F+f g++++++i+ el++p k   mt v++ ++++++++yi+
  KOO23241.1  97 RFTSLFAVLALIYLaIAMGVHFGIDASIMPSKTIGEVRLiEFGHYSTGTASSISLIIFSFDGQMNVPSIYSELRTPYKTRVMTAVSSRAMAICALCYIA 195
                 ************99999********************9988999999*******************************99******************* PP

    Aa_trans 245 vGlvGYltFGnevkgnillnlpkss...........ilivivnlllvlhlilsfplqlhplrqvvenllikkeavagasekeapkskllrlvirlllvv 332
                 +G+vGY+ F  + +g +l+n+   +            + + + l+++l+l++++p++l+p r+ ++  ++++          ++ ++l+++ +++++ +
  KOO23241.1 196 IGFVGYANFPHSSQGDLLNNYCLHTpsltsysahmpSIMTSAALAIALQLLMAYPVNLYPGRDTLDLAFFSQ--------CGRRHKQLRHVGLTFFMAA 286
                 *********************8888888999999999999*****************************986........555566678********** PP

    Aa_trans 333 ityliAlsvpslakvlslvGatsstplsfilPalfhlklikte 375
                  ++ +Al  p ++ v++++G t+ + l+f+ Pal+  +l   +
  KOO23241.1 287 PSLALALVLPDISVVFGVLGGTANVYLCFVMPALIAWRLRHRT 329
                 **********************************998887665 PP

>> Trp_Tyr_perm  Tryptophan/tyrosine permease family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.8  13.4   3.3e-09     2e-05      60     367 ..       8     330 ..       1     354 [. 0.69

  Alignments for each domain:
  == domain 1  score: 23.8 bits;  conditional E-value: 3.3e-09
  Trp_Tyr_perm  60 aakeeasfttlakkllGkkgniivalvllfllyiLlvAyisggGsilselleeasgialsarlavliftlvlgalvvlstkavd.....rinrvllf 151
                   +a   asf++la+  +G++ +  +++++ ++++   vAy+ + G+il+  +     +++++ l   +    + ++++l  ++v      r+++++ +
    KOO23241.1   8 EATGVASFEDLAEVAFGRWNRRAIGASVFVISFGSAVAYTIALGDILQPFIDVFAATHSMPWLTRDLCLSAFWVVIMLPLSLVKdvsqlRFTSLFAV 104
                   455679*****************************************98777666555444444444333444444443333331112256777766 PP

  Trp_Tyr_perm 152 lklvafvlllalllskvksdvLls..........aksdtskvslvlsalPvlllsfGFhgivpslvkyldknvkkvkkailiGtliaLvlyllWeli 238
                   l l+ +++++ + +  ++ +++ s          ++    +   + s++ +++ sf  + +vps+++ l +  k+ +   +   ++a+++     +i
    KOO23241.1 105 LALIYLAIAMGVHF-GIDASIMPSktigevrlieFG---HYSTGTASSISLIIFSFDGQMNVPSIYSELRTPYKTRVMTAVSSRAMAICALC---YI 194
                   66666655554433.344444444444234321133...5556677888999999999*********9999977777777777888887765...45 PP

  Trp_Tyr_perm 239 vlGnlpreelariiakggnldtlveallelleskslelavelFsflAlatS.flGvalglf...dyl.adlfklsdskkgrlklglvtflp...Plv 327
                    +G +  +++ +  + +   +  ++  + ++ s ++ ++++  + lA+a   ++++ + l    d l + +f    +++++l+ + +tf +    l+
    KOO23241.1 195 AIGFVGYANFPHSSQGDLLNNYCLHTPSLTSYSAHMPSIMTS-AALAIALQlLMAYPVNLYpgrDTLdLAFFSQCGRRHKQLRHVGLTFFMaapSLA 290
                   566666999999888886667777777777777888777766.556666551678999996443555234555566777788888888864332799 PP

  Trp_Tyr_perm 328 lalffPegflkalgyAGlaatilavilPallawkarkkkk 367
                   lal+ P + +      G+a+  l+ ++Pal+aw+ r++  
    KOO23241.1 291 LALVLPDISVVFGVLGGTANVYLCFVMPALIAWRLRHRTV 330
                   *******9887766777****************9998754 PP

>> Yippee-Mis18  Yippee zinc-binding/DNA-binding /Mis18, centromere assembly
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   4.6e-05      0.28      51      97 ..     182     230 ..     164     237 .. 0.81

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 4.6e-05
                   EEEEEEEETTT--EEEEE.EEECSCC.CCCCCTCEEEEGGGEEEEESSS CS
  Yippee-Mis18  51 ctystlsCkgCnsvlGwk.Yksteee.lkykrglfiletkaitsyslge 97 
                   ++     C+ C  ++G++ Y + + + + ++ + ++l+t ++tsys   
    KOO23241.1 182 SSRAMAICALCYIAIGFVgYANFPHSsQGDLLNNYCLHTPSLTSYSAHM 230
                   5556788*********98688888778******************9765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (385 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       631  (0.0351944); expected 358.6 (0.02)
Passed bias filter:                      287  (0.0160076); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.47u 0.24s 00:00:00.71 Elapsed: 00:00:00.40
# Mc/sec: 2894.43
//
Query:       KOO23242.1  [L=1185]
Description: phospholipase c-eta2, partial [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      3e-48  163.1   0.0    1.5e-47  160.8   0.0    2.0  2  PI-PLC-X         Phosphatidylinositol-specific phospholipase 
  ------ inclusion threshold ------
      0.066   13.9   0.3        0.3   11.8   0.1    2.2  2  NADH-u_ox-rdase  NADH-ubiquinone oxidoreductase complex I, 21


Domain annotation for each model (and alignments):
>> PI-PLC-X  Phosphatidylinositol-specific phospholipase C, X domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.0      0.12     1e+03      79     107 ..     606     634 ..     597     652 .. 0.77
   2 !  160.8   0.0   1.6e-51   1.5e-47       1     144 [.     926    1066 ..     926    1067 .. 0.97

  Alignments for each domain:
  == domain 1  score: -0.8 bits;  conditional E-value: 0.12
                 HHHHSTT--EEEEEEETTT-THHHHHHHH CS
    PI-PLC-X  79 yafktselPvivsLevhcsaeqqekmaei 107
                    + s+ Pv++++  h s + q+  a+ 
  KOO23242.1 606 ASAQMSQRPVVLQIVCHSSLRGQRHTAKG 634
                 55678999************999998875 PP

  == domain 2  score: 160.8 bits;  conditional E-value: 1.6e-51
                  SEEEEETTTTTTS-SHHHH.HTHHHH---SS-HHHHHHTT--EEEEEE-...TT.SEEEETTEEE.EEEHHHHHHHHHHHHHHSTT--EEEEEEETT CS
    PI-PLC-X    1 lsaPlshyfissshntylt.gnqlssessveayrnaLlrGcRcvEidvwdgedeepvvlhgytltkkikfrdvleaikdyafktselPvivsLevhc 96  
                  l++Pl hyf++ shntyl+ ++ql ++s v++yr++Ll+GcR vE+dvwdge++ep+v+hg+tl++kikf+ +++ai + af+++++Pv +sLe  c
  KOO23242.1  926 LDQPLAHYFVAASHNTYLMdQDQLAGTSCVDMYRRVLLAGCRSVELDVWDGEEGEPIVTHGRTLCTKIKFEACVKAIAEAAFVNNPYPVSLSLEIRC 1022
                  589***************9468*************************************************************************** PP

                  T-THHHHHHHHHHHHGGGGB-EEETT-.------BCCCCTT-EEEEE. CS
    PI-PLC-X   97 saeqqekmaeilkeifgdlLleeplekeeskelpspeelkgKilikvk 144 
                  s++qq+++a il++ +gd Ll +++      +++sp++l+++ilik k
  KOO23242.1 1023 SRRQQSRVAAILRTHLGDALLLPDDV----PAHCSPKSLQRRILIKGK 1066
                  *********************99865....699*************99 PP

>> NADH-u_ox-rdase  NADH-ubiquinone oxidoreductase complex I, 21 kDa subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.1   3.3e-05       0.3      15      81 ..     106     174 ..     103     175 .. 0.78
   2 ?   -2.3   0.0      0.84   7.6e+03      27      49 ..     528     550 ..     519     572 .. 0.74

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 3.3e-05
  NADH-u_ox-rdase  15 rvlrnfrpsDYvkaaaitaafplallaleklsPsvagka...mtlagligflggfllayqnssqRLkGfr 81 
                      r +rn + +D +++  +++ +  + ++ e+l+P++a +    +++    ++++g+ll+ + s++R  G+r
       KOO23242.1 106 RAMRNENHADLIAVGLLSVLLG-GAMLAESLAPRHATAIhppLWVGVGCALISGLLLFVSASMYRRLGWR 174
                      5566666666666666655554.45566789999977769*****************************8 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 0.84
  NADH-u_ox-rdase  27 kaaaitaafplallaleklsPsv 49 
                      +aaa+taa+   ++a e++++ +
       KOO23242.1 528 VAAAATAALGRKWWAREHVARDQ 550
                      46777778888888888877554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1185 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       605  (0.0337442); expected 358.6 (0.02)
Passed bias filter:                      392  (0.021864); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.76u 0.27s 00:00:01.03 Elapsed: 00:00:00.45
# Mc/sec: 7958.79
//
Query:       KOO23243.1  [L=352]
Description: phosphoinositide-specific phospholipase c [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.5e-13   51.1   0.0    2.7e-13   50.3   0.0    1.5  1  PI-PLC-Y  Phosphatidylinositol-specific phospholipase C, Y do
  ------ inclusion threshold ------
      0.036   14.4   0.0      0.065   13.5   0.0    1.4  1  C2        C2 domain


Domain annotation for each model (and alignments):
>> PI-PLC-Y  Phosphatidylinositol-specific phospholipase C, Y domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.3   0.0     3e-17   2.7e-13      70     114 ..       1      45 [.       1      46 [. 0.97

  Alignments for each domain:
  == domain 1  score: 50.3 bits;  conditional E-value: 3e-17
    PI-PLC-Y  70 lnpvefWnvGvqmvAlnwqtldegmqlnealFaengscGYvlKPe 114
                 ++p+  W++Gvq+vAln qt+d  +ql+ alF++ g+ GYvlKP+
  KOO23243.1   1 MDPLLSWRAGVQLVALNLQTVDLPTQLHYALFERGGGFGYVLKPA 45 
                 58999***************************************7 PP

>> C2  C2 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.0   7.3e-06     0.065      36      74 ..     230     269 ..     218     295 .. 0.84

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 7.3e-06
                 EEE-.SCSSSSSSEEEEEEEEEESCHTTSEEEEEEEEECS CS
          C2  36 akTr.viknslnPvWnekftfevaeleeakLeveVfdndr 74 
                 + T+  i n lnPv++e ++   ae++e++L++ + d d+
  KOO23243.1 230 FSTSaAIANGLNPVFHELVHCLAAEPNETVLKLGIVDADV 269
                 455536799****************************998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (352 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       475  (0.0264934); expected 358.6 (0.02)
Passed bias filter:                      316  (0.0176251); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.44u 0.26s 00:00:00.70 Elapsed: 00:00:00.40
# Mc/sec: 2641.33
//
Query:       KOO23244.1  [L=424]
Description: pantothenate kinase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.1e-87  293.4   0.0    2.5e-87  293.2   0.0    1.0  1  Fumble    Fumble


Domain annotation for each model (and alignments):
>> Fumble  Fumble
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  293.2   0.0   1.4e-91   2.5e-87       2     330 .]      16     395 ..      15     395 .. 0.89

  Alignments for each domain:
  == domain 1  score: 293.2 bits;  conditional E-value: 1.4e-91
      Fumble   2 iavDiGgsLaKlvYfsr..................kkkksaaekekeeeveeeeeseelggrLhfikfetekieevleflkelllkskekekkkktika 82 
                 +++DiGgsL K++Y+ +                    + s+   +  ee + + +   lgg++hf + +t++i   +++l+++ l   ++     +i+a
  KOO23244.1  16 FGLDIGGSLLKVIYLVPdsdsgsnggglakpselsPAAFSKGVPRCVEEPSLTVQVPALGGTFHFSYCSTSEIGPAVQLLRRHRLCVGAE-----SIHA 109
                 799**************99999999999999866433333444445556666777888899*********************97776555.....9*** PP

      Fumble  83 TGGGaykyaelikeelgvevekedemeclikGlkfllteipkevftys..............................eekpkkavekkeseeiyPylL 151
                 TGGGa+ky +l+++elg ++   +e+++++ G+ ++ + +p+e++t++                               +k ++ +  ++s++ +P+lL
  KOO23244.1 110 TGGGAHKYRKLLEAELGATLLPCNELHAVVLGICLMAKAVPDECYTFErvadpaaaavgeerpqaiiipsdqlgivqpMRKIHRPFA-NRSDDFFPFLL 207
                 **********************************************************************99887643123444443.57889****** PP

      Fumble 152 vniGSGvsilkvegeekfervgGtslgGgtfwGLlslLtgaksfdellelaekGdnskvDmlvgDiyGe..dyekiglksdliassfgkvfkkkkkkee 248
                 +n+G+Gvsil+v++e++++rv+Gt+lgGgtf+GL++lLt+a+ f+e+le+a++Gd+++v+mlv+DiyG+  + + ++l +dl as f+k +  ++ + +
  KOO23244.1 208 CNVGTGVSILHVQSETDYTRVSGTALGGGTFLGLARLLTQARRFEEALEVAARGDARRVNMLVSDIYGSgdERSGLKLPGDLTASFFAKNIAADDPEAD 306
                 *******************************************************************9844666677889*********9998866655 PP

      Fumble 249 eek....eDiarslLyaisnnigqiaylqaklhnlkriyFgGsfirgheqtmktlsyaikfwskge...lkalFlrHegylGavGaflk 330
                  ++     Di++sl+++i++n++qia l+a++h+ +r++F+G+f+r+++ +++tl y+++ w + +   ++a+F+rHegy+Ga+Gafl+
  KOO23244.1 307 PRAhvtdDDICKSLVVMIAQNVAQIAHLNARIHGARRVFFTGNFLRRNDLALRTLVYTMHRWKQLDdypTEAVFFRHEGYFGAIGAFLQ 395
                 5547888********************************************************9877779*****************95 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (424 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       349  (0.0194657); expected 358.6 (0.02)
Passed bias filter:                      331  (0.0184617); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.26s 00:00:00.73 Elapsed: 00:00:00.41
# Mc/sec: 3096.25
//
Query:       KOO23245.1  [L=202]
Description: hypothetical protein Ctob_004732 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.5e-35  121.9   0.2    2.9e-35  121.7   0.2    1.0  1  RETICULATA-like  Protein RETICULATA-related


Domain annotation for each model (and alignments):
>> RETICULATA-like  Protein RETICULATA-related
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  121.7   0.2   1.6e-39   2.9e-35      15     175 ..       1     156 [.       1     158 [. 0.98

  Alignments for each domain:
  == domain 1  score: 121.7 bits;  conditional E-value: 1.6e-39
  RETICULATA-like  15 lEevigvsasllaevekRkerfleEldlvladvvvgsvvnfalvwllAPtaslgsssassgalkkllkslPdnvFekslpgreftlqqRvaafv 108
                      +E+++g+  +l+ae ++R+ ++l+E+d+vla+++ +++ n+alv  l P+a+++ s   +g+ + + ++lP    +k    ++f+  qR+a+f+
       KOO23245.1   1 MEITLGFLSTLAAEKAARGADLLKEIDFVLANLILVVLTNVALVLTLCPVAAVAPSPV-AGTYAAWASRLPGFFLQK----GDFSAMQRAACFF 89 
                      7999************************************************999987.5899**************....************* PP

  RETICULATA-like 109 ykgaklaavGfiaglvgtglsnalialrkkldpsfesevkvppvlksalvygaflgvssNlRYQila 175
                      +k++ ++ vG++++ +g++++ +l++lr+kl+p+ +++v+  pvl +a +y+af++ ssN+RYQ+++
       KOO23245.1  90 SKALLFSGVGAFTSSAGQAVTLGLVQLRTKLRPDDAPKVTLAPVLPTARAYAAFMAGSSNTRYQLVN 156
                      *****************************************************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (202 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       441  (0.024597); expected 358.6 (0.02)
Passed bias filter:                      296  (0.0165096); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.25s 00:00:00.65 Elapsed: 00:00:00.40
# Mc/sec: 1518.55
//
Query:       KOO23246.1  [L=220]
Description: hypothetical protein Ctob_004729 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (220 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       397  (0.0221429); expected 358.6 (0.02)
Passed bias filter:                      332  (0.0185175); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.25s 00:00:00.63 Elapsed: 00:00:00.39
# Mc/sec: 1696.52
//
Query:       KOO23247.1  [L=209]
Description: hypothetical protein Ctob_004727 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.2e-06   26.2   8.6    4.4e-05   23.3   8.6    2.0  1  Orai-1    Mediator of CRAC channel activity
  ------ inclusion threshold ------
        4.5    7.2   5.3         10    6.0   0.9    2.2  2  DUF3487   Protein of unknown function (DUF3487)


Domain annotation for each model (and alignments):
>> Orai-1  Mediator of CRAC channel activity
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.3   8.6   4.9e-09   4.4e-05       3      78 ..      19      89 ..      17     171 .. 0.67

  Alignments for each domain:
  == domain 1  score: 23.3 bits;  conditional E-value: 4.9e-09
      Orai-1  3 elnrrklelsrakLkassrtsALlsgFamvamvelqlkeseekeeeisealliafsvvtavlvavhllallistli 78
                el  ++l+l+++   a+  +sA+++gF++ ++ve++l+ ++    +  + +l +f +  ++ v    +a+++ + +
  KOO23247.1 19 ELREKELKLFNQNFSAICTQSAIMAGFTLTTFVEIDLPPEK----QLAKTMLHFFVT-CSICVNFTCVAMVTFVNV 89
                567799*******************************7664....366666666655.567788888888775544 PP

>> DUF3487  Protein of unknown function (DUF3487)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.2   0.2    0.0085        76      41      73 ..      65      97 ..      35      99 .. 0.79
   2 ?    6.0   0.9    0.0011        10      30      77 ..     120     165 ..     110     172 .. 0.60

  Alignments for each domain:
  == domain 1  score: 3.2 bits;  conditional E-value: 0.0085
     DUF3487 41 lllallvgslaliptialllvllvvlvggklla 73
                +l ++++ s+ + +t++ ++ ++ v+ ggk+l+
  KOO23247.1 65 MLHFFVTCSICVNFTCVAMVTFVNVWGGGKALR 97
                55566677799999999999999*****99986 PP

  == domain 2  score: 6.0 bits;  conditional E-value: 0.0011
     DUF3487  30 glglvvglvlglllallvgslaliptialllvllvvlvggkllarlKR 77 
                 ++g+ v + lg ++  +v ++++ p +a+++ ++v+     + ++ +R
  KOO23247.1 120 LFGAGVLATLGCVF--AVTWILMEPEVAMVASVIVLSAFYMVCSEARR 165
                 45555555555554..56666777777777777666665555555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (209 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       979  (0.0546043); expected 358.6 (0.02)
Passed bias filter:                      605  (0.0337442); expected 358.6 (0.02)
Passed Vit filter:                        59  (0.00329076); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.41u 0.26s 00:00:00.67 Elapsed: 00:00:00.38
# Mc/sec: 1629.33
//
Query:       KOO23248.1  [L=405]
Description: hypothetical protein Ctob_004726 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    0.00098   19.5   0.6     0.0017   18.8   0.6    1.6  1  AAA_16           AAA ATPase domain
  ------ inclusion threshold ------
       0.05   13.3   0.0       0.11   12.3   0.0    1.5  1  AAA_29           P-loop containing region of AAA domain
      0.056   13.1   0.0      0.094   12.4   0.0    1.3  1  Sigma54_activat  Sigma-54 interaction domain


Domain annotation for each model (and alignments):
>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.8   0.6   2.8e-07    0.0017      24      81 ..     138     194 ..     115     335 .. 0.76

  Alignments for each domain:
  == domain 1  score: 18.8 bits;  conditional E-value: 2.8e-07
      AAA_16  24 p..elvllsGesGvGKsslvrellralekd...ggiflrgkcdqlesaipysalaqalareel 81 
                 p    vl++G+s+vGK++l ++l+r ++k+   +g+++++    l      ++ ++a+ + +l
  KOO23248.1 138 PpeATVLIVGHSAVGKTALGDALHRLARKAgreDGLVVAESHGLL------LPSLEAFPELKL 194
                 25678*****************99876666776455544433333......345555554444 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   1.8e-05      0.11      19      45 ..     137     163 ..     127     168 .. 0.83

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 1.8e-05
      AAA_29  19 idlkgatlltGpsGsGKSTllDAiqal 45 
                 + ++ ++l++G+s +GK++l DA+  l
  KOO23248.1 137 LPPEATVLIVGHSAVGKTALGDALHRL 163
                 4555689****************9876 PP

>> Sigma54_activat  Sigma-54 interaction domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   1.6e-05     0.094      16      50 ..     134     168 ..     120     180 .. 0.80

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 1.6e-05
                      HHHCTSSS-EEEECSTTSSHHHHHHHHHHHSTTTT CS
  Sigma54_activat  16 kkvaktdlsvlitGesGtGKellaraiheaskrke 50 
                      k+  + +++vli+G s +GK+ l +a+h+  +++ 
       KOO23248.1 134 KSSLPPEATVLIVGHSAVGKTALGDALHRLARKAG 168
                      44556679*********************776654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (405 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       596  (0.0332422); expected 358.6 (0.02)
Passed bias filter:                      407  (0.0227007); expected 358.6 (0.02)
Passed Vit filter:                        57  (0.00317921); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.50u 0.27s 00:00:00.77 Elapsed: 00:00:00.42
# Mc/sec: 2865.73
//
Query:       KOO23249.1  [L=221]
Description: hypothetical protein Ctob_004740 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    6.9e-06   26.4   0.4       0.11   13.0   0.1    2.4  2  DUF4440      Domain of unknown function (DUF4440)
     0.0033   17.7   0.0          1    9.6   0.0    2.4  2  SnoaL_3      SnoaL-like domain
      0.009   16.2   0.0        3.5    7.8   0.0    2.5  2  CaMKII_AD    Calcium/calmodulin dependent protein kinase II a
  ------ inclusion threshold ------
       0.02   15.2   0.0       0.83   10.1   0.0    2.2  2  OB_NTP_bind  Oligonucleotide/oligosaccharide-binding (OB)-fol
      0.041   14.5   2.9        2.2    9.0   0.6    2.8  3  SnoaL_2      SnoaL-like domain


Domain annotation for each model (and alignments):
>> DUF4440  Domain of unknown function (DUF4440)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.7   0.0   7.4e-05      0.26      64     104 ..       2      40 ..       1      44 [. 0.88
   2 !   13.0   0.1     3e-05      0.11      50     103 ..     154     205 ..     124     210 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 7.4e-05
                 EEEETTEEEEEEEEEEEECCTTEEEEEEEEEEEEEEEETTE CS
     DUF4440  64 vrvlgdlAvvtgrytfegrgdgepvegrgrftsvwrkeggg 104
                 v+ +gd+A+++g y f+   dg+  e r  +t+ ++++++g
  KOO23249.1   2 VKCYGDVALAMGDYVFTDATDGS--EARVEYTFGYKRNDDG 40 
                 5678******************5..8999********8654 PP

  == domain 2  score: 13.0 bits;  conditional E-value: 3e-05
                 CHCEEEEEEEEEEEEEEETTEEEEEEEEEEEECCTTEEEEEEEEEEEEEEEETT CS
     DUF4440  50 gfaagrslelteeevrvlgdlAvvtgrytfegrgdgepvegrgrftsvwrkegg 103
                 g+  ++++++++ +++  g +A ++g y f+    g++  +r  +t+ ++++++
  KOO23249.1 154 GGRGWSNVVFRNHKIDLNGPTAQAMGDYVFTDATSGDK--VRVEYTFGYKRNDD 205
                 56779999***********************9888874..58899999999865 PP

>> SnoaL_3  SnoaL-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.6   0.0   0.00028         1      68     120 ..       2      53 ..       1      54 [. 0.80
   2 !    5.7   0.0    0.0046        17      71     120 ..     178     219 ..     150     220 .. 0.67

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 0.00028
     SnoaL_3  68 vtesgdvawvtelldvtaaedgtegegqlrlTgvlrrtdg.gWkivhhhlSvpa 120
                 v+ +gdva++  +  + +++ +  +e+++ +T+ + r+d+ + +i  hh+Svp+
  KOO23249.1   2 VKCYGDVALAMGD--YVFTDATDGSEARVEYTFGYKRNDDgKVRIYLHHSSVPF 53 
                 6678999999885..6787888888999*8888886655439**********97 PP

  == domain 2  score: 5.7 bits;  conditional E-value: 0.0046
     SnoaL_3  71 sgdvawvtelldvtaaedgtegegqlrlTgvlrr.tdggWkivhhhlSvpa 120
                 +g         d+ +++ ++  + ++ +T+ + r +dg+ +i  hh+Svp+
  KOO23249.1 178 MG---------DYVFTDATSGDKVRVEYTFGYKRnDDGKVRIYLHHSSVPF 219
                 33.........4455555556677887777776515669**********97 PP

>> CaMKII_AD  Calcium/calmodulin dependent protein kinase II association domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.8   0.0   0.00097       3.5      74     128 .]       2      52 ..       1      52 [. 0.75
   2 !    6.0   0.0    0.0034        12      94     128 .]     185     218 ..     159     218 .. 0.74

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 0.00097
                 EEEESTTEEEEEEEEEEEEE-TTS-EEEEEEEEEEEEEEETTEEEEEEEEEE-XX CS
   CaMKII_AD  74 vrllgddsAviayvrlltlldknGkkhtrqseetrVwekrdgkWkivhvHrSaap 128
                 v+ +gd +A+  + +++t      +   + +e+t+ +++ d++ + +  H+S+ p
  KOO23249.1   2 VKCYGD-VALAMGDYVFTDATDGSE---ARVEYTFGYKRNDDGKVRIYLHHSSVP 52 
                 667777.777777777764443333...46***********99999999999765 PP

  == domain 2  score: 6.0 bits;  conditional E-value: 0.0034
                 -TTS-EEEEEEEEEEEEEEETTEEEEEEEEEE-XX CS
   CaMKII_AD  94 dknGkkhtrqseetrVwekrdgkWkivhvHrSaap 128
                 d+    + + +e+t+ +++ d++ + +  H+S+ p
  KOO23249.1 185 DATSGDK-VRVEYTFGYKRNDDGKVRIYLHHSSVP 218
                 4433333.699**********99999999999765 PP

>> OB_NTP_bind  Oligonucleotide/oligosaccharide-binding (OB)-fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.0   0.00023      0.83      22      72 ..      30      81 ..       8      83 .. 0.82
   2 ?    3.0   0.0     0.037   1.3e+02      22      40 ..     196     218 ..     159     220 .. 0.79

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.00023
                 C...EEETT.TCEEEEE-TTSTTTTT...TSSSEEEEEEEEESSSEEEEEEEEE- CS
  OB_NTP_bind 22 d...yktar.tktrvfihpsSvlaknekekepewvvytelvettklylrdltaid 72
                 +   yk    +k r+++h sSv +k   +  p+ v  +e + ++k ++  ++ i+
   KOO23249.1 30 YtfgYKRNDdGKVRIYLHHSSVPFK---DAGPAPVTEQEVLAAQKAWADSIASIS 81
                 1444888877899***********8...689999999999999999999999987 PP

  == domain 2  score: 3.0 bits;  conditional E-value: 0.037
                  C...EEETT.TCEEEEE-TTSTT CS
  OB_NTP_bind  22 d...yktar.tktrvfihpsSvl 40 
                  +   yk    +k r+++h sSv 
   KOO23249.1 196 YtfgYKRNDdGKVRIYLHHSSVP 218
                  1444888877899********95 PP

>> SnoaL_2  SnoaL-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.0   0.1     0.021        76      64      99 ..       6      42 ..       2      45 .. 0.83
   2 ?    0.3   0.0       0.3   1.1e+03      45      77 ..      68     114 ..      46     132 .. 0.67
   3 ?    9.0   0.6    0.0006       2.2      21      99 ..     125     208 ..     121     211 .. 0.80

  Alignments for each domain:
  == domain 1  score: 4.0 bits;  conditional E-value: 0.021
                TTEEEEEEEEEEEEETTSSEEEEEEEEEEEE.ETTEE CS
     SnoaL_2 64 gdrvavewtvtgtipatgrgvtvrgvdvfrv.rdGki 99
                gd +++ +++  t  ++g++ +v+++  ++  +dGk+
  KOO23249.1  6 GDVALAMGDYVFTDATDGSEARVEYTFGYKRnDDGKV 42
                7788888888888899999999999999999677987 PP

  == domain 2  score: 0.3 bits;  conditional E-value: 0.3
                 HHHHHEEEEEEEEEEEEEE.TTEEEEEEEEEEE.............E CS
     SnoaL_2  45 alfaafpdlrfeihdvvad.gdrvavewtvtgt.............i 77 
                 a+++a+ d   +i +v+ d gd+va+  ++ g+             +
  KOO23249.1  68 AAQKAWADSIASISKVYKDkGDYVAAAAEAAGKlygygkcdvmfkpT 114
                 34445677888888886665899999888877766666666665442 PP

  == domain 3  score: 9.0 bits;  conditional E-value: 0.0006
                 EEEEEEEETTSEEESHHHHHH....HHHHHHHHEEEEEEEEEEEEEETTEEEEEEEEEEEEETTSSEEEEEEEEEEEE.ETTEE CS
     SnoaL_2  21 apdvvwedpggelrGreaira....ffralfaafpdlrfeihdvvadgdrvavewtvtgtipatgrgvtvrgvdvfrv.rdGki 99 
                 a+d++ + +g+e  G +++      f     ++++ + f+ h++  +g ++ + +++  t  ++g++v+v+++  ++  +dGk+
  KOO23249.1 125 AADAMSYFVGAEAMGADDFVGedggFAINGGRGWSNVVFRNHKIDLNGPTAQAMGDYVFTDATSGDKVRVEYTFGYKRnDDGKV 208
                 5677777777777777777765665444444589999*******9999999999999999999*************99778998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (221 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       315  (0.0175693); expected 358.6 (0.02)
Passed bias filter:                      263  (0.014669); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.41u 0.24s 00:00:00.64 Elapsed: 00:00:00.40
# Mc/sec: 1640.75
//
Query:       KOO23250.1  [L=519]
Description: hypothetical protein Ctob_000848 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (519 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       657  (0.0366445); expected 358.6 (0.02)
Passed bias filter:                      379  (0.0211389); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.49u 0.25s 00:00:00.74 Elapsed: 00:00:00.40
# Mc/sec: 3935.03
//
Query:       KOO23251.1  [L=266]
Description: hypothetical protein Ctob_000851 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (266 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      3242  (0.180824); expected 358.6 (0.02)
Passed bias filter:                      598  (0.0333538); expected 358.6 (0.02)
Passed Vit filter:                       184  (0.0102627); expected 17.9 (0.001)
Passed Fwd filter:                        61  (0.00340231); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 1.15u 0.34s 00:00:01.49 Elapsed: 00:00:00.50
# Mc/sec: 1609.76
//
Query:       KOO23252.1  [L=244]
Description: proteasomal ubiquitin receptor adrm1 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.2e-17   63.4   0.0    3.3e-17   62.8   0.0    1.3  1  Proteasom_Rpn13  Proteasome complex subunit Rpn13 ubiquitin r
    2.4e-10   40.6   0.1    3.7e-10   40.0   0.1    1.3  1  RPN13_C          UCH-binding domain


Domain annotation for each model (and alignments):
>> Proteasom_Rpn13  Proteasome complex subunit Rpn13 ubiquitin receptor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.8   0.0   3.7e-21   3.3e-17       1      86 []      17      99 ..      17      99 .. 0.96

  Alignments for each domain:
  == domain 1  score: 62.8 bits;  conditional E-value: 3.7e-21
  Proteasom_Rpn13  1 GkceldektkkvkpdprkGliylykeeeellhfkWkdrektgeaeddlilipgdasfkkveqcktgRvyvLkfksssqrlfFWlQd 86
                     Gk++l+++t  v++dprkGl+ + k++++l+h+ Wkdr  ++++ ddli++ gda++++ve+ck+g ++++ f   +++lfF  Q+
       KOO23252.1 17 GKANLEGTT--VTSDPRKGLLIMRKSDDGLTHLIWKDRV-ANSVVDDLIVFEGDAKIQRVEECKDGFCMLIAFAAGGRKLFFYSQE 99
                     888999666..*************9**************.99*****************************************997 PP

>> RPN13_C  UCH-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.0   0.1   4.2e-14   3.7e-10      12     112 .]     133     221 ..     122     221 .. 0.84

  Alignments for each domain:
  == domain 1  score: 40.0 bits;  conditional E-value: 4.2e-14
     RPN13_C  12 aaaq.epevsLsdiltpealspllsdpevveeLashLPeegeateeelretlrSPqfrqalsslsqALqsgqlgpvlsqlgLdeeavaaaakggveaFl 109
                 +  +  p+v+L+d+l++e + p ++ +++  +La+hLP+ g    ++  +tl++Pq++qa   +++AL +g   +++++l+L++       + g+e Fl
  KOO23252.1 133 EG-TaGPPVALNDVLRAEDVVPKVD-EAMEAALAEHLPS-G----DSAAATLSTPQMAQAAMRFNEALYQGDAFGLMRELNLNPT------GPGLEPFL 218
                 22.2599**********99999774.45589********.4....4456799********************************9......99999999 PP

     RPN13_C 110 kAl 112
                 +Al
  KOO23252.1 219 RAL 221
                 996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (244 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       386  (0.0215294); expected 358.6 (0.02)
Passed bias filter:                      316  (0.0176251); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.41u 0.23s 00:00:00.64 Elapsed: 00:00:00.39
# Mc/sec: 1891.30
//
Query:       KOO23253.1  [L=456]
Description: hypothetical protein Ctob_000844 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.3e-07   31.3   0.0    3.1e-07   30.1   0.0    1.5  1  ATP-grasp_4   ATP-grasp domain
    4.9e-06   26.7   0.0    7.1e-06   26.1   0.0    1.3  1  ATP-grasp_3   ATP-grasp domain
     0.0027   17.4   0.0      0.014   15.1   0.0    2.1  1  ATPgrasp_Ter  ATP-grasp in the biosynthetic pathway with Ter 
  ------ inclusion threshold ------
      0.017   14.9   0.0      0.054   13.3   0.0    1.8  2  GARS_A        Phosphoribosylglycinamide synthetase, ATP-grasp


Domain annotation for each model (and alignments):
>> ATP-grasp_4  ATP-grasp domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.1   0.0   6.8e-11   3.1e-07       5     156 ..     183     327 ..     180     330 .. 0.79

  Alignments for each domain:
  == domain 1  score: 30.1 bits;  conditional E-value: 6.8e-11
  ATP-grasp_4   5 vviKPsvgffSlGVykinneeewkaavaaieeeleqakeeykeevveeesflvEeyieGeEfavdayfdeeGepvilnilk...kefaseedvsdrly 99 
                   v+KP  g +S+ V  +++ e+ ++ +++++++  +++   +  +  +++++v e++ GeEf vd+   + Ge+  +++ +    e   ++ v d   
   KOO23253.1 183 AVVKPRRGQASVMVGLARSLEQARHMFDRLQAS--KVS--LD--ARGGGEVVVQELLVGEEFVVDVVS-RAGEHKAVALWRyskGERNGAPFVYDYDQ 273
                  69****************************976..233..33..33689999**************88.99998777765411033344444656556 PP

  ATP-grasp_4 100 vtsakvieetlealeellkevnallglknfpvHiElrvsedgkiipiEvnplrfagl 156
                  +++ +    +++al e+  +   +lg + +p+HiEl  + dg+ + iEvn+ r+ g+
   KOO23253.1 274 LMPCA--GPKERALVEYAFATLDALGWQWGPAHIELMSTVDGPRL-IEVNAGRLNGC 327
                  66654..4667788888888889******************9766.9******9987 PP

>> ATP-grasp_3  ATP-grasp domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.1   0.0   1.6e-09   7.1e-06       3     156 ..     142     321 ..     140     327 .. 0.87

  Alignments for each domain:
  == domain 1  score: 26.1 bits;  conditional E-value: 1.6e-09
                  SHHHHHHHHTTT.S---....-EESS--..........SSSEEEEESS-------B--SS--TTE.....................EEEE---SEEEE CS
  ATP-grasp_3   3 dKlktykkLkeagvkvPtkleaeeleee..........ekklvvKprdGaggesvrvveekeeaeaaieeve..............lvqefieGkplS 76 
                  dK+   ++L++ag+ v ++++  +++ +          + + vvKpr+G ++  v +++  e+a  +++ ++              +vqe + G+++ 
   KOO23253.1 142 DKFLANEALRAAGLAVVQQTSPGSWAAAeaflrtlpqpPLRAVVKPRRGQASVMVGLARSLEQARHMFDRLQaskvsldargggevVVQELLVGEEFV 239
                  78888888888888887666666666666666777777999************************9999999999*********************** PP

                  EEEEE.SSSEEEEEEEEEEEET.......TEEE.EEEES----HHHHHHHHHHHHHTTSTT--EEEEEEEEESS.SEEEEEEES CS
  ATP-grasp_3  77 vsllsdgekvlvlavnrqliekaeke...fvya.GnvtpietelkeevvelaeevvekleglaGyvGvDlvlkdeepyviEvNP 156
                  v+++s + + + +a+ r   + +  +   fvy   +++p    +++ +ve a  ++ +l   +G + ++l+ + ++p +iEvN+
   KOO23253.1 240 VDVVSRAGEHKAVALWRYSKGER--NgapFVYDyDQLMPCAGPKERALVEYAFATLDALGWQWGPAHIELMSTVDGPRLIEVNA 321
                  *************9999877653..2358888636899*********************889*********9999********7 PP

>> ATPgrasp_Ter  ATP-grasp in the biosynthetic pathway with Ter operon
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.0   3.1e-06     0.014       5      83 ..     227     320 ..     225     340 .. 0.65

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 3.1e-06
  ATPgrasp_Ter   5 llvmeyLegpEySvDvlaekgevl.aavpRrKekgglq..............elekdeelielaerlaeefgld.glvnvQvrededgpkLLEiN 83 
                   ++v+e L g+E+ vDv++++ge   +a+ R+ + g+ +                 k+ +l+e+a +  +++g + g   + +  + dgp+L+E+N
    KOO23253.1 227 VVVQELLVGEEFVVDVVSRAGEHKaVALWRYSK-GERNgapfvydydqlmpcAGPKERALVEYAFATLDALGWQwGPAHIELMSTVDGPRLIEVN 320
                   79*****************77654277888876.3333334555555443333345555555555555555554345556666666666666666 PP

>> GARS_A  Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.0   1.2e-05     0.054      19     104 ..     159     248 ..     141     259 .. 0.76
   2 ?   -2.0   0.0      0.55   2.5e+03     172     187 ..     306     321 ..     301     324 .. 0.86

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 1.2e-05
                 -EEEESSHHHHHHHHHHHSSSE..EEEEESC-GGGT-EEEESSHHHHHHHHHHHCTS-TTC..CCCSSEEEEE---SEEEEEEEEECTTE CS
      GARS_A  19 eyeaftdpeeakeyieeataka..lVvKadglaagKgvivakseeealkavkeilekkkfG..eagekvviEelleGeEvsllalvdgkt 104
                 + ++  + ++a+++++++ ++   +VvK+ +  a   v +a+s e+a ++ + +  +k       g +vv+ ell GeE+ + +++   +
  KOO23253.1 159 QQTSPGSWAAAEAFLRTLPQPPlrAVVKPRRGQASVMVGLARSLEQARHMFDRLQASKVSLdaRGGGEVVVQELLVGEEFVVDVVSRAGE 248
                 4444446678999999999987678************************999988877665225589*************9988776555 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 0.55
                 EEEEETTEEEEEEEES CS
      GARS_A 172 glmlvedgpkvlefnv 187
                 +lm + dgp+++e n+
  KOO23253.1 306 ELMSTVDGPRLIEVNA 321
                 689999*******996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (456 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       279  (0.0155614); expected 358.6 (0.02)
Passed bias filter:                      245  (0.013665); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.43u 0.25s 00:00:00.68 Elapsed: 00:00:00.37
# Mc/sec: 3724.80
//
Query:       KOO23254.1  [L=248]
Description: hypothetical protein Ctob_000840 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    5.5e-06   26.4   0.3      0.046   13.6   0.1    2.9  3  2_5_RNA_ligase2  2'-5' RNA ligase superfamily
     0.0003   20.9   0.0       0.66   10.2   0.0    2.5  2  LigT_PEase       LigT like Phosphoesterase


Domain annotation for each model (and alignments):
>> 2_5_RNA_ligase2  2'-5' RNA ligase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.2   0.0   0.00025       2.2      74     136 ..      27      95 ..       5     106 .. 0.67
   2 ?    1.4   0.0     0.029   2.6e+02      54     100 ..     107     151 ..      96     179 .. 0.69
   3 !   13.6   0.1   5.2e-06     0.046      26      76 ..     182     230 ..     171     241 .. 0.85

  Alignments for each domain:
  == domain 1  score: 8.2 bits;  conditional E-value: 0.00025
  2_5_RNA_ligase2  74 vylsv.....sdsealqalraallealpeagdkedsgeftPHlTiaqsadstsa...aelleklaqalppl 136
                      v +++     + +++   l ++l+++lp+a  +    + t H+Tia   + t     ++++e+   +++p+
       KOO23254.1  27 VLVCAwpmpsDVQSQAGSLCEKLRAELPAAAYVY--PPSTLHCTIATLRAFTHGamdSSAVEACVALWEPV 95 
                      344447777888999999************8877..**********9875554455634444333555554 PP

  == domain 2  score: 1.4 bits;  conditional E-value: 0.029
  2_5_RNA_ligase2  54 tepfevrldgfgvFehkks.vvylsvsdsealqalraallealpeagd 100
                      t+p+++r +++     ++   + + ++ + a+ a+raal++a+ +ag 
       KOO23254.1 107 TQPVRLRMEAPTL---EGAaGILRYADLDGAIAAMRAALRDAIVAAGG 151
                      5666666666666...455566677777999999*****999887754 PP

  == domain 3  score: 13.6 bits;  conditional E-value: 5.2e-06
  2_5_RNA_ligase2  26 pHitLlypfvededladlaellsrlaketepfevrl.dgfgvFehkksvvyl 76 
                      +H tL+    e++d a++ae+ +r+a++++p+e+++  +++vFe+     y+
       KOO23254.1 182 VHSTLVRWTAEPDDRAAAAEAFARVAQSWTPLELTVpRAIAVFER---LPYM 230
                      899*********************************889999986...5555 PP

>> LigT_PEase  LigT like Phosphoesterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.2   0.0   7.4e-05      0.66       3      49 ..      34      79 ..      33     100 .. 0.77
   2 !    8.0   0.0   0.00035       3.1      25      73 ..     172     219 ..     161     228 .. 0.81

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 7.4e-05
                -CHHHHHHHHHHHHHHHHHHCCTTEEET.SGGGSEEEEEEEEEESHHH CS
  LigT_PEase  3 ppeeiaeelarlaaeleralaklglkpv.rpfnpHiTLaflgevdeek 49
                +p++++ ++ +l ++l+++l+   +  v +p ++H T+a l++ +  +
  KOO23254.1 34 MPSDVQSQAGSLCEKLRAELP--AAAYVyPPSTLHCTIATLRAFTHGA 79
                588999999999*****6664..344455************9988443 PP

  == domain 2  score: 8.0 bits;  conditional E-value: 0.00035
                 TTEEETSGGGSEEEEEEEEEESHHHHHHHHHHHHHHHHTSBEEEEEEEE CS
  LigT_PEase  25 lglkpvrpfnpHiTLaflgevdeekvpellealaeiasgaepfelkvdg 73 
                  +++p  p+ +H TL +  + ++++++ + ea+a++a+   p el+v +
  KOO23254.1 172 GEVPPHIPDIVHSTLVRWTAEPDDRAA-AAEAFARVAQSWTPLELTVPR 219
                 5667778999*******9887666666.669***********9999976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (248 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       347  (0.0193541); expected 358.6 (0.02)
Passed bias filter:                      267  (0.0148921); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.40u 0.23s 00:00:00.63 Elapsed: 00:00:00.36
# Mc/sec: 2052.64
//
Query:       KOO23255.1  [L=408]
Description: hypothetical protein Ctob_000841 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (408 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       632  (0.0352502); expected 358.6 (0.02)
Passed bias filter:                      334  (0.018629); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.47u 0.22s 00:00:00.69 Elapsed: 00:00:00.38
# Mc/sec: 3183.39
//
Query:       KOO23256.1  [L=223]
Description: hypothetical protein Ctob_000838 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (223 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       270  (0.0150594); expected 358.6 (0.02)
Passed bias filter:                      205  (0.011434); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.40u 0.26s 00:00:00.66 Elapsed: 00:00:00.41
# Mc/sec: 1613.16
//
Query:       KOO23257.1  [L=183]
Description: centrin-1 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.3e-12   46.0   2.4    1.5e-06   28.6   0.2    2.8  3  EF-hand_7  EF-hand domain pair
    1.4e-09   37.6   0.4    8.9e-05   22.3   0.2    2.5  2  EF-hand_8  EF-hand domain pair
    9.1e-08   31.1   4.4       0.11   12.1   0.1    4.5  4  EF-hand_1  EF hand
    1.5e-07   31.6   0.1    3.4e-05   24.1   0.0    2.3  2  EF-hand_9  EF-hand domain
    3.5e-07   29.6   5.4      0.098   12.6   1.8    4.7  4  EF-hand_6  EF-hand domain
  ------ inclusion threshold ------
      0.039   13.7   0.2       0.41   10.5   0.6    2.3  2  DUF3967    Protein of unknown function (DUF3967)


Domain annotation for each model (and alignments):
>> EF-hand_7  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.4   0.1       0.3   8.9e+02      36      55 ..      21      40 ..       7      49 .. 0.68
   2 !   16.0   0.1   4.2e-06     0.013      18      69 ..      53      98 ..      31     100 .. 0.85
   3 !   28.6   0.2   4.9e-10   1.5e-06       4      70 ..     112     172 ..     110     173 .. 0.95

  Alignments for each domain:
  == domain 1  score: 0.4 bits;  conditional E-value: 0.3
   EF-hand_7 36 gegsklsdeelellfkefDt 55
                +++ +l+d+ l ++ + fD+
  KOO23257.1 21 RRKRELTDDMLTEIQDSFDL 40
                67778888665555555553 PP

  == domain 2  score: 16.0 bits;  conditional E-value: 4.2e-06
   EF-hand_7 18 yldkeellrllrkifqgagegsklsdeelellfkefDtdkdGvisfdEFlkl 69
                ++d+eel  ++r        g ++++ +l++l +e D  + G+++fd +l++
  KOO23257.1 53 KIDVEELVVVMR------ALGHEPDKLALKKLAQESDPENTGRLDFDGYLNI 98
                8*****998888......89999999*********************99887 PP

  == domain 3  score: 28.6 bits;  conditional E-value: 4.9e-10
   EF-hand_7   4 lkeaFkelDtdgdgyldkeellrllrkifqgagegsklsdeelellfkefDtdkdGvisfdEFlkly 70 
                 l+ aF+++D+    ++d ++l+r+          g++++deel ++++e D+++ Gv+   +F+k++
  KOO23257.1 112 LEKAFRLFDQGSKQHVDFNDLKRIAG------QIGEVIDDEELMQMLREADSTGEGVVGQADFMKIV 172
                 7899******************9998......89******************************986 PP

>> EF-hand_8  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.0   0.0   2.3e-05      0.07       4      49 ..      53      96 ..      53     100 .. 0.94
   2 !   22.3   0.2     3e-08   8.9e-05       2      52 ..     124     172 ..     123     175 .. 0.90

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 2.3e-05
   EF-hand_8  4 kItreelrrilrilglkkglseeevdilfrefDtdgdGkisfeEFc 49
                kI++eel+  +r+lg +    + ++  l  e D ++ G+++f+ ++
  KOO23257.1 53 KIDVEELVVVMRALGHE--PDKLALKKLAQESDPENTGRLDFDGYL 96
                7**********999988..***********************9886 PP

  == domain 2  score: 22.3 bits;  conditional E-value: 3e-08
   EF-hand_8   2 kgkItreelrril.rilglkkglseeevdilfrefDtdgdGkisfeEFcvll 52 
                 k+ +++ +l+ri+  i g    + +ee+  ++re+D  g G++++ +F+  +
  KOO23257.1 124 KQHVDFNDLKRIAgQI-GEV--IDDEELMQMLREADSTGEGVVGQADFMKIV 172
                 7889*********666.988..**************************9765 PP

>> EF-hand_1  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.3   0.0    0.0056        17      16      29 .]      53      66 ..      53      66 .. 0.91
   2 ?    3.7   0.0     0.018        53       2      20 ..      75      93 ..      74      97 .. 0.88
   3 !   12.1   0.1   3.7e-05      0.11       1      25 [.     111     135 ..     111     138 .. 0.93
   4 !    8.7   0.1   0.00044       1.3       1      28 [.     147     174 ..     143     175 .. 0.93

  Alignments for each domain:
  == domain 1  score: 5.3 bits;  conditional E-value: 0.0056
                EEEHHHHHHHHHHH CS
   EF-hand_1 16 kIdfeEfkellkkl 29
                kId eE++ ++++l
  KOO23257.1 53 KIDVEELVVVMRAL 66
                7**********975 PP

  == domain 2  score: 3.7 bits;  conditional E-value: 0.018
                HHHHHHHHTTTSSSEEEHH CS
   EF-hand_1  2 lkeiFrefDkDgdGkIdfe 20
                lk++ +e D  ++G++df+
  KOO23257.1 75 LKKLAQESDPENTGRLDFD 93
                57777899*********97 PP

  == domain 3  score: 12.1 bits;  conditional E-value: 3.7e-05
                 HHHHHHHHHTTTSSSEEEHHHHHHH CS
   EF-hand_1   1 elkeiFrefDkDgdGkIdfeEfkel 25 
                 +l+++Fr+fD+    ++df+++k++
  KOO23257.1 111 DLEKAFRLFDQGSKQHVDFNDLKRI 135
                 689*******************986 PP

  == domain 4  score: 8.7 bits;  conditional E-value: 0.00044
                 HHHHHHHHHTTTSSSEEEHHHHHHHHHH CS
   EF-hand_1   1 elkeiFrefDkDgdGkIdfeEfkellkk 28 
                 el ++ re+D  g G +   +f++++++
  KOO23257.1 147 ELMQMLREADSTGEGVVGQADFMKIVTS 174
                 7899*******************99986 PP

>> EF-hand_9  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.1   0.0   1.1e-08   3.4e-05      14      64 ..      53     101 ..      49     103 .. 0.94
   2 !    5.4   0.0    0.0075        22       2      62 ..     114     172 ..     104     175 .. 0.85

  Alignments for each domain:
  == domain 1  score: 24.1 bits;  conditional E-value: 1.1e-08
   EF-hand_9  14 rVpvsrlidyLravtaqdpeeseLeelakelDPdgedasvdldtflrvmre 64 
                 ++ v +l+ ++ra +  +p  ++L +la+e DP++  + +d+d++l ++ +
  KOO23257.1  53 KIDVEELVVVMRALGH-EPDKLALKKLAQESDPENT-GRLDFDGYLNIILN 101
                 58899***********.*******************.**********9865 PP

  == domain 2  score: 5.4 bits;  conditional E-value: 0.0075
   EF-hand_9   2 tvFevcDtqktGrVpvsrlidyLravtaqdpeeseLeelakelDPdgedasvdldtflrvm 62 
                   F+++D  +   V   +l+ +  + ++    + eL +  +e+D  ge + v   +f +++
  KOO23257.1 114 KAFRLFDQGSKQHVDFNDLKRIAGQIGE-VIDDEELMQMLREADSTGE-GVVGQADFMKIV 172
                 5699999999999999999999999999.8888899999999999999.888877777765 PP

>> EF-hand_6  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.0   0.0     0.001       3.1       4      31 .]      39      67 ..      33      67 .. 0.79
   2 ?   -0.3   0.0      0.46   1.4e+03      10      20 ..      83      93 ..      80     101 .. 0.78
   3 !   12.6   1.8   3.3e-05     0.098       2      25 ..     112     135 ..     111     159 .. 0.92
   4 !    5.3   0.0    0.0072        22       2      30 ..     148     175 ..     147     176 .. 0.84

  Alignments for each domain:
  == domain 1  score: 8.0 bits;  conditional E-value: 0.001
   EF-hand_6  4 eaFklfDkdgdG..kidaeElrkalrkalg 31
                ++F     ++dG  kid eEl+ ++r alg
  KOO23257.1 39 DLFTSANESDDGppKIDVEELVVVMR-ALG 67
                45555566699999************.887 PP

  == domain 2  score: -0.3 bits;  conditional E-value: 0.46
   EF-hand_6 10 DkdgdGkidae 20
                D +++G +d++
  KOO23257.1 83 DPENTGRLDFD 93
                66788999886 PP

  == domain 3  score: 12.6 bits;  conditional E-value: 3.3e-05
   EF-hand_6   2 lreaFklfDkdgdGkidaeElrka 25 
                 l++aF+lfD+    ++d+++l+++
  KOO23257.1 112 LEKAFRLFDQGSKQHVDFNDLKRI 135
                 899******************997 PP

  == domain 4  score: 5.3 bits;  conditional E-value: 0.0072
   EF-hand_6   2 lreaFklfDkdgdGkidaeElrkalrkal 30 
                 l++  ++ D +g G + +++++k+ + ++
  KOO23257.1 148 LMQMLREADSTGEGVVGQADFMKIVT-SY 175
                 66777889***************998.65 PP

>> DUF3967  Protein of unknown function (DUF3967)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.4   0.0      0.35     1e+03      12      18 ..      30      36 ..      29      45 .. 0.87
   2 ?   10.5   0.6   0.00014      0.41       6      15 ..     145     154 ..     145     158 .. 0.93

  Alignments for each domain:
  == domain 1  score: -0.4 bits;  conditional E-value: 0.35
     DUF3967 12 viREiQE 18
                ++ EiQ+
  KOO23257.1 30 MLTEIQD 36
                789***8 PP

  == domain 2  score: 10.5 bits;  conditional E-value: 0.00014
     DUF3967   6 DeqLMkviRE 15 
                 De+LM+++RE
  KOO23257.1 145 DEELMQMLRE 154
                 9********* PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (183 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       497  (0.0277205); expected 358.6 (0.02)
Passed bias filter:                      433  (0.0241508); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.40u 0.27s 00:00:00.67 Elapsed: 00:00:00.42
# Mc/sec: 1306.58
//
Query:       KOO23258.1  [L=420]
Description: pyruvate kinase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   1.3e-101  340.0   0.0   1.6e-101  339.7   0.0    1.0  1  PK         Pyruvate kinase, barrel domain
  ------ inclusion threshold ------
      0.018   14.2   0.1      0.047   12.8   0.1    1.7  1  HpcH_HpaI  HpcH/HpaI aldolase/citrate lyase family
      0.071   12.1   0.5       0.68    8.9   0.0    2.4  3  IMPDH      IMP dehydrogenase / GMP reductase domain


Domain annotation for each model (and alignments):
>> PK  Pyruvate kinase, barrel domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  339.7   0.0  2.7e-105  1.6e-101       2     341 ..      66     412 ..      65     417 .. 0.95

  Alignments for each domain:
  == domain 1  score: 339.7 bits;  conditional E-value: 2.7e-105
                 --SEEEEEESCCCTSHHHHHHHHHHTEEEEEEETTSS-HHHHHHHHHHHHHHHHTTTTS-EEEEE---S-EBB--BTTCSSSEEE-TTSEEEEE-SCTC CS
          PK   2 rrtkivctlGPasesvekleklieaGlnvvrlnfshGsheehqerienvreaekklgkkvaillDtkGpeirtgllkdgkkdielkegdklkvsldekl 100
                 r+ k+v+tlGPas+s  +++kl++aG++v+rln sh    + +e i  +r+a+ ++g++v il D++Gp+ r +l++d +  + l++g+ l++ l ++ 
  KOO23258.1  66 RKGKVVATLGPASSSLIMIQKLVAAGVDVFRLNASHRRPGQFEELIPWIRAAATAAGRDVRILGDIQGPKFRCSLTQD-DVPVPLTRGEVLEFGLAASN 163
                 899***************************************************************************.99****************** PP

                 TTTBBTTEEEB....S-TTHHHHS-TTEEEEETTTTEEEEEEEEETTEEEEEEESS-EEE-SS-BEE-TTS---S-SS-HHHHHHHHHHHHCT-SEEEE CS
          PK 101 keegdeelial....dyknivkdvevGktilvdDGllslkvlevdeekeleveventgvlgskkgvnlpgtkvdlpalsekDkadlrfgvkqgvdliaa 195
                 ++++ +  i+l    + + +++ v++G ++l+dDG +++kv +  +   ++vev ++g+l+s+kg+n+p+ ++d  al+ kD++d ++ ++ gvd ia+
  KOO23258.1 164 ADATRPGRITLsptvEQTALMRGVTPGMRLLLDDGFMEVKVVSRVSPDLVKVEVLVGGKLKSRKGINVPELQIDCSALTAKDREDAKYLLSMGVDYIAL 262
                 9999999997622114566************************999999************************************************** PP

                 TTE-SHHHHHHHHHHHTCCC..TTSE..EEEEE-SCHHHHTHHHHHHHSSEEEEEHHHHHHHSTCCCHHHHHHHHHHHHHHHT--EEEESSTTGGGGTS CS
          PK 196 sfvrkasDvkevrevleeeg..keik..iiakienqegvenldeileasDgimvarGDlGieipaekvllvqkklikkcnlagkpvitatqmlesmikn 290
                 sf +kasD++e+ ++++++g  k+++  ii kie+  +++n+deil  sDg+mvarGDlG+e++ ++v+++qk l++k+n agk  itatqm+esmi+n
  KOO23258.1 263 SFAQKASDIQELIDLMDAQGvpKSARpaIIPKIEKPAALRNIDEILALSDGLMVARGDLGVELGLQRVPFAQKFLVRKANDAGKFCITATQMMESMISN 361
                 *****************99986555344*********************************************************************** PP

                 SS--HHHHHHHHHHHHHT-SEEEESHHHHTSS-HHHHHHHHHHHHHHHHHT CS
          PK 291 PrptraevsDvanavlDGtDavmLsgetakGkyPveavkamaevaleaeka 341
                   ptraevsDvanav+DGtDavmLsge+a G+ Pv  v+ m ++  eae+ 
  KOO23258.1 362 AVPTRAEVSDVANAVFDGTDAVMLSGESAMGDDPVGVVQWMGRIIAEAEAH 412
                 ************************************************986 PP

>> HpcH_HpaI  HpcH/HpaI aldolase/citrate lyase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.1   7.9e-06     0.047      94     171 ..     266     343 ..     241     383 .. 0.67

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 7.9e-06
                 -SHHHHHHHHHHTSHTTTS---HCCC-EEEEEE-SHHHHHTHHHHHTSTTEEEEEE-HHHHHHHTT-TTSTTSHHHH.....H CS
   HpcH_HpaI  94 etaeealevvsalrepekgirganketrllaqiEsaegvknaeeIaavegldgvflGaeDlsadlgtkrspegtevl.....d 171
                 ++a +++e+  ++         + ++  ++  iE  +++ n++eI+a+   dg++++  Dl ++lg++r p  ++ l     d
  KOO23258.1 266 QKASDIQELIDLMDAQG---VPKSARPAIIPKIEKPAALRNIDEILALS--DGLMVARGDLGVELGLQRVPFAQKFLvrkanD 343
                 44444444444433333...335566778999**************886..78889999**********99888877664433 PP

>> IMPDH  IMP dehydrogenase / GMP reductase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.9   0.0   0.00011      0.68      93     144 ..      68     119 ..      28     135 .. 0.88
   2 ?    0.2   0.0     0.049   2.9e+02     103     130 ..     243     270 ..     233     280 .. 0.81
   3 ?   -2.1   0.0      0.24   1.4e+03     219     235 ..     369     385 ..     342     397 .. 0.68

  Alignments for each domain:
  == domain 1  score: 8.9 bits;  conditional E-value: 0.00011
                 B-EEEEE-SSTTHHHHHHHHHHTT-SEEEEE-STSSSHHHHHHHHHHHHHTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       IMPDH  93 llvgaavgvkedalervkalveagvdvlvvdsahghsekvleavkeikkkve 144
                   v a++g  +++l  +++lv+agvdv  ++++h    +  e + +i+++++
  KOO23258.1  68 GKVVATLGPASSSLIMIQKLVAAGVDVFRLNASHRRPGQFEELIPWIRAAAT 119
                 56889999999999**********************9999999999998764 PP

  == domain 2  score: 0.2 bits;  conditional E-value: 0.049
                 TTHHHHHHHHHHTT-SEEEEE-STSSSH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       IMPDH 103 edalervkalveagvdvlvvdsahghse 130
                 +++ e +k l++ gvd +++  a+  s+
  KOO23258.1 243 AKDREDAKYLLSMGVDYIALSFAQKASD 270
                 45689999************99998776 PP

  == domain 3  score: -2.1 bits;  conditional E-value: 0.24
                 HHHHHHHHHTT-SEEEE CS
                 xxxxxxxxxxxxxxxxx RF
       IMPDH 219 sgdivkAlaaGadavml 235
                   d++ A+  G+davml
  KOO23258.1 369 VSDVANAVFDGTDAVML 385
                 34566666666666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (420 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       394  (0.0219756); expected 358.6 (0.02)
Passed bias filter:                      351  (0.0195772); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.50u 0.24s 00:00:00.74 Elapsed: 00:00:00.40
# Mc/sec: 3144.02
//
Query:       KOO23259.1  [L=187]
Description: cd4-specific ankyrin repeat protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.5e-17   62.1   1.0    2.6e-10   40.7   0.1    2.2  2  Ank_2       Ankyrin repeats (3 copies)
    8.2e-15   55.0   1.0    4.9e-06   27.0   0.2    3.2  4  Ank_4       Ankyrin repeats (many copies)
    1.1e-14   53.0   0.0     0.0045   17.4   0.0    4.3  4  Ank_3       Ankyrin repeat
    6.6e-13   48.5   1.2    0.00013   22.2   0.0    3.8  3  Ank         Ankyrin repeat
    2.3e-11   43.7   0.0    0.00014   22.0   0.0    3.4  3  Ank_5       Ankyrin repeats (many copies)
  ------ inclusion threshold ------
      0.021   15.1   0.0         15    6.0   0.0    2.7  3  Mur_ligase  Mur ligase family, catalytic domain


Domain annotation for each model (and alignments):
>> Ank_2  Ankyrin repeats (3 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.7   0.1   8.9e-14   2.6e-10      21      77 ..      41     107 ..      18     112 .. 0.80
   2 !   20.8   0.1   1.4e-07   0.00042      23      63 ..     114     163 ..     107     178 .. 0.77

  Alignments for each domain:
  == domain 1  score: 40.7 bits;  conditional E-value: 8.9e-14
       Ank_2  21 dpn..k..ngktaLhyAakngnleivklLleh......adndgrtpLhyAarsghleivklLlekga 77 
                 ++n  +  +g+t+L+ A+++ ++ +vk+Ll++       d+dg+t+ h Aar gh ei+ +Llekg 
  KOO23259.1  41 ELNavEahTGQTPLFKAVSEKKTTAVKMLLKAgadatiGDKDGYTVCHEAARLGHHEILLMLLEKGL 107
                 444441359************99*******9775545444***********************9985 PP

  == domain 2  score: 20.8 bits;  conditional E-value: 1.4e-07
       Ank_2  23 nkngktaLhyAakng...nleivklLleh...ad...ndgrtpLhyAars 63 
                 +++g t+Lh A+ +    ++ +v++L+++   ad   ++g++p+ +A+ +
  KOO23259.1 114 HTDGFTPLHRACTGKseaHTAAVRALIKAgapADqkaKNGMSPMELAVDN 163
                 34899*******9753346678*****977886666899********976 PP

>> Ank_4  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.3   0.0   0.00056       1.7      10      55 .]      23      70 ..      15      70 .. 0.73
   2 !   21.5   0.0   8.9e-08   0.00027       3      55 .]      52     103 ..      50     103 .. 0.94
   3 !   27.0   0.2   1.6e-09   4.9e-06       2      55 .]      84     140 ..      83     140 .. 0.80
   4 !   12.1   0.0   7.5e-05      0.22       3      41 ..     119     163 ..     119     171 .. 0.81

  Alignments for each domain:
  == domain 1  score: 9.3 bits;  conditional E-value: 0.00056
       Ank_4 10 isgrlelvr.lLlek.gadinaqdnrsGetalhiAakrgnveilklLl 55
                ++++le ++  +l k   ++na+    G+t+l +A++  +  ++k+Ll
  KOO23259.1 23 HMNDLEKLEaEILGKrSTELNAVEAHTGQTPLFKAVSEKKTTAVKMLL 70
                555555555445544357788886677*******************98 PP

  == domain 2  score: 21.5 bits;  conditional E-value: 8.9e-08
       Ank_4   3 taLhyaaisgrlelvrlLlekgadinaqdnrsGetalhiAakrgnveilklLl 55 
                 t+L++a+++ ++ +v+ Ll  gad     +++G t  h Aa+ g+ eil +Ll
  KOO23259.1  52 TPLFKAVSEKKTTAVKMLLKAGADATIG-DKDGYTVCHEAARLGHHEILLMLL 103
                 89**********************7776.99********************98 PP

  == domain 3  score: 27.0 bits;  conditional E-value: 1.6e-09
       Ank_4   2 ltaLhyaaisgrlelvrlLlekgadinaqdn..rsGetalhiAa..krg.nveilklLl 55 
                 +t++h aa  g++e++  Llekg  +  + +   +G+t+lh+A+  k + +  +++ L+
  KOO23259.1  84 YTVCHEAARLGHHEILLMLLEKGLPC-TT-DyhTDGFTPLHRACtgKSEaHTAAVRALI 140
                 79*********************984.22.54456*********553335688888886 PP

  == domain 4  score: 12.1 bits;  conditional E-value: 7.5e-05
       Ank_4   3 taLhyaai...sgrlelvrlLlekgadinaqdnrsGet....alhi 41 
                 t+Lh+a+    + ++ +vr L+  ga  +    ++G++    a+++
  KOO23259.1 119 TPLHRACTgksEAHTAAVRALIKAGAPADQK-AKNGMSpmelAVDN 163
                 79************************87776.89999944445555 PP

>> Ank_3  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.4   0.0   1.5e-06    0.0045       2      29 ..      50      76 ..      49      78 .. 0.93
   2 !   16.2   0.1   3.7e-06     0.011       1      27 [.      82     107 ..      82     111 .. 0.90
   3 !   13.1   0.0   3.6e-05      0.11       1      29 [.     116     146 ..     116     148 .. 0.82
   4 ?    0.7   0.0       0.4   1.2e+03       1      14 [.     152     165 ..     152     172 .. 0.84

  Alignments for each domain:
  == domain 1  score: 17.4 bits;  conditional E-value: 1.5e-06
       Ank_3  2 GetpLhlAarsgnleivkfLlenkgadv 29
                G+tpL+ A++  +++ vk+Ll+  gad 
  KOO23259.1 50 GQTPLFKAVSEKKTTAVKMLLK-AGADA 76
                9*********************.8*996 PP

  == domain 2  score: 16.2 bits;  conditional E-value: 3.7e-06
       Ank_3   1 nGetpLhlAarsgnleivkfLlenkga 27 
                 +G+t  h+Aar g++ei+ +Lle kg 
  KOO23259.1  82 DGYTVCHEAARLGHHEILLMLLE-KGL 107
                 699999*****************.775 PP

  == domain 3  score: 13.1 bits;  conditional E-value: 3.6e-05
       Ank_3   1 nGetpLhlAarsgnl..e.ivkfLlenkgadv 29 
                 +G tpLh+A+   +   +  v++L++  ga+ 
  KOO23259.1 116 DGFTPLHRACTGKSEahTaAVRALIK-AGAPA 146
                 699************54246******.78875 PP

  == domain 4  score: 0.7 bits;  conditional E-value: 0.4
       Ank_3   1 nGetpLhlAarsgn 14 
                 nG++p+ lA+ ++ 
  KOO23259.1 152 NGMSPMELAVDNAA 165
                 799******99875 PP

>> Ank  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.5   0.0   0.00023      0.69       2      31 ..      50      80 ..      49      81 .. 0.89
   2 !   12.4   0.2   5.7e-05      0.17       1      24 [.      82     106 ..      82     115 .. 0.86
   3 !   22.2   0.0   4.5e-08   0.00013       1      25 [.     116     144 ..     116     152 .. 0.79

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00023
                SBBHHHHHHHHTTHHHHHHHH.TTTSTTCBT CS
         Ank  2 GnTPLHlAatngkkriiklLL.hGAnlnald 31
                G TPL  A++++k+  +k+LL  GA+ ++ d
  KOO23259.1 50 GQTPLFKAVSEKKTTAVKMLLkAGADATIGD 80
                99*******************77**977766 PP

  == domain 2  score: 12.4 bits;  conditional E-value: 5.7e-05
                 TSBBHHHHHHHHTTHHHHHHHH.TT CS
         Ank   1 dGnTPLHlAatngkkriiklLL.hG 24 
                 dG+T+ H Aa+ g+++i+ +LL +G
  KOO23259.1  82 DGYTVCHEAARLGHHEILLMLLeKG 106
                 9*****************9999778 PP

  == domain 3  score: 22.2 bits;  conditional E-value: 4.5e-08
                 TSBBHHHHHHHHTT...HHHHHHHH.TTT CS
         Ank   1 dGnTPLHlAatngk...kriiklLL.hGA 25 
                 dG+TPLH+A+t+++   +  +++L+  GA
  KOO23259.1 116 DGFTPLHRACTGKSeahTAAVRALIkAGA 144
                 9*********6555766999999**7796 PP

>> Ank_5  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.0   0.0   4.8e-08   0.00014      16      55 ..      50      89 ..      45      90 .. 0.93
   2 !   10.5   0.0    0.0002      0.61      13      43 ..      80     110 ..      78     112 .. 0.92
   3 !   16.8   0.0   2.1e-06    0.0063       1      56 []     102     160 ..     102     160 .. 0.83

  Alignments for each domain:
  == domain 1  score: 22.0 bits;  conditional E-value: 4.8e-08
       Ank_5 16 gntpLhvAakygaadvvrlLlargadlnltdsrGltaldl 55
                g+tpL  A++    + v++Ll+ gad+++ d++G+t+++ 
  KOO23259.1 50 GQTPLFKAVSEKKTTAVKMLLKAGADATIGDKDGYTVCHE 89
                88**********************************9876 PP

  == domain 2  score: 10.5 bits;  conditional E-value: 0.0002
       Ank_5  13 dgggntpLhvAakygaadvvrlLlargadln 43 
                 d++g+t+ h Aa+ g+ +++++Ll+ g+ ++
  KOO23259.1  80 DKDGYTVCHEAARLGHHEILLMLLEKGLPCT 110
                 889*********************9999886 PP

  == domain 3  score: 16.8 bits;  conditional E-value: 2.1e-06
       Ank_5   1 Llehg.padvnrldgggntpLhvAakyg...aadvvrlLlargadlnltdsrGltaldlA 56 
                 Lle+g p+ + ++  +g+tpLh A+ +    +   vr L++ ga ++++ ++G ++++lA
  KOO23259.1 102 LLEKGlPCTT-DYHTDGFTPLHRACTGKseaHTAAVRALIKAGAPADQKAKNGMSPMELA 160
                 5666644444.6788999*******97534489*************************98 PP

>> Mur_ligase  Mur ligase family, catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.8   0.0    0.0058        17      10      43 ..       2      35 ..       2      46 .. 0.89
   2 ?    6.0   0.0    0.0052        15      33      63 ..      67      98 ..      55     111 .. 0.75
   3 ?   -1.3   0.0      0.95   2.8e+03      34      42 ..     138     146 ..     126     170 .. 0.69

  Alignments for each domain:
  == domain 1  score: 5.8 bits;  conditional E-value: 0.0058
                CCHHHHHHHHHHTTSEEEEEESSHCHHHTT-EEE CS
  Mur_ligase 10 rgmsagalflalkGykvdGsdfieslialGaaav 43
                r++s +al+++ +G++v+   + ++l++l a+++
  KOO23259.1  2 RSLSLLALVALVRGNNVHRYVHMNDLEKLEAEIL 35
                567889*************999999**9999985 PP

  == domain 2  score: 6.0 bits;  conditional E-value: 0.0052
                HCHHHTT-EEEES-HGGGGEE-T.S-TTCHHH CS
  Mur_ligase 33 eslialGaaavvghdaanivvss.iskdnpel 63
                + l+++Ga a +g++++++v+++ ++ ++ e+
  KOO23259.1 67 KMLLKAGADATIGDKDGYTVCHEaARLGHHEI 98
                3399*************999998888884443 PP

  == domain 3  score: -1.3 bits;  conditional E-value: 0.95
                 CHHHTT-EE CS
  Mur_ligase  34 slialGaaa 42 
                  li++Ga+a
  KOO23259.1 138 ALIKAGAPA 146
                 378888776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (187 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       403  (0.0224776); expected 358.6 (0.02)
Passed bias filter:                      309  (0.0172346); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.42u 0.22s 00:00:00.64 Elapsed: 00:00:00.39
# Mc/sec: 1455.69
//
Query:       KOO23260.1  [L=1237]
Description: map kinase kinase-like protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    4.1e-24   85.4   0.0    1.3e-23   83.7   0.0    1.8  2  Pkinase        Protein kinase domain
      1e-15   57.9   0.0    2.2e-15   56.8   0.0    1.5  1  PARP           Poly(ADP-ribose) polymerase catalytic domain
    1.5e-10   40.8   0.0      4e-10   39.4   0.0    1.6  2  Pkinase_Tyr    Protein tyrosine kinase
    1.2e-06   28.3   0.0      0.032   14.1   0.0    2.3  2  Motile_Sperm   MSP (Major sperm protein) domain
    2.3e-06   27.1   0.0    5.8e-06   25.8   0.0    1.6  1  Kdo            Lipopolysaccharide kinase (Kdo/WaaP) family


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.1      0.55     2e+03     233     258 ..     387     424 ..     350     427 .. 0.65
   2 !   83.7   0.0   3.6e-27   1.3e-23      30     264 .]     559     794 ..     546     794 .. 0.83

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 0.55
                 S............-HHHHHHHHHHT-SSGCCSTTHHHH CS
     Pkinase 233 i............seeakdllkkllkkdpkkRltaeel 258
                               eea+ l+++++++  ++R+   el
  KOO23260.1 387 HlgaeprrrlgalREEALPLISRCMREVDRSRVELPEL 424
                 12333333344449999*********999999987776 PP

  == domain 2  score: 83.7 bits;  conditional E-value: 3.6e-27
                 EEEECHCHCHHHHHHHHHHHHHHHHHSCTTB--EEEEEEE....SSEEEEEEE--TTEBHHHHHHHHSS--HHHHHHHHHHHHHHHHHHHHTTEE-SS- CS
     Pkinase  30 KkikkekakkkkekkvlrEikilkklkhpnivrlyevfee....kdelylvleyveggeladllerkgslseeeakkiakqilegleylHskgiiHrDl 124
                 K+   ++ ++   ++++rE++il +l+hp i ++   fe+     +  y+ l +++ g+++ +l +k+ ++ +  k  ++ ++ +l++lH +g+ H D+
  KOO23260.1 559 KEYTLQRSED--WRRLQREVRILSELRHPLIAEVECLFESsragGRVAYMQLRHCDAGDMQAWLLQKSPIALA-RKAALNDVALALRHLHGHGFAHGDV 654
                 5555554444..467************************988888999****************988887765.578999******************* PP

                 SGGGEEEETTTE....EEE-SGTTSEESSSSCS.BCTTTSCGGGS-HHHH......TTSCB.SHHHHHHHHHHHHHHHHHSS-STTTSSHHHHHHHHHH CS
     Pkinase 125 KpeNiLidekge....lKitDFGlakelesssk.ltsfvgtseYlAPEvl......keney.skkvDvWslGvilyelltgkppfsgekgkekvekeld 211
                 K  N+L+  +ge      ++DF  ++ + s s   +s+ gt++Y+APE+          +  ++++D++++Gv +++ ++++  +  + +   +    +
  KOO23260.1 655 KLPNVLMAAQGEgvwnACLADFETSRDIASMSAaPSSVLGTQQYRAPELSqpanssAPAPKpTHAADLFAYGVCVLKATCREGSLCFSPS-G-ALLSWH 751
                 ********999999999************9998899**************88765422444599************99998766552222.1.122222 PP

                 THHHHHHHCTSHH...HHHTTS-HHHHHHHHHHT-SSGCCSTTHHHHHTSGGG CS
     Pkinase 212 qlekilkilgetkeklpeaseiseeakdllkkllkkdpkkRltaeellqhpyl 264
                           ++  + +  ++   ++  ll+ ll+  p+ R+ a+++ qhp+l
  KOO23260.1 752 ----------KSASDAEASESKYAHLEALLRGLLADAPEARFDATSASQHPFL 794
                 ..........34456677777788999************************97 PP

>> PARP  Poly(ADP-ribose) polymerase catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.8   0.0   6.1e-19   2.2e-15      22     194 ..    1008    1229 ..     995    1230 .. 0.82

  Alignments for each domain:
  == domain 1  score: 56.8 bits;  conditional E-value: 6.1e-19
                  EEEEEEEEEEEETTHHHHCGCCGG..................................SS-EEEEEEEE-GGGHHHHHHH-S--S-TTS-GGGSTTS CS
        PARP   22 klkileifrvqregeaerfqekkk..................................lrnrrlLfHGsrltnvasilsqGLriappeapvtGymfG 84  
                  +l++   +r++++++++r+ + ++                                  + n+r+L HG++ + ++sils+G       +  +   fG
  KOO23260.1 1008 RLELACAWRLEHPKLWDRYVSGQQqiqeqlarlrrngaalsslvlktdrahfpggmnaEANERVLLHGTKPDMLLSILSNGP-----NEHFSRGIFG 1099
                  6778888999999999999888877778888887777777777777777777777777777********************8.....33333357** PP

                  SSEEEBSSHHHHHGGG--BSSS-EEE.....................EEEEEEE--SEEEESS--TGCCGGTT-SEEEE-EEEEEGG.EEETTE--S CS
        PARP   85 kGiYfAddaskSanYcktsekkgsgl.....................llLaeValGdikeltkadylekakkgkksvkgkgktepesivekdgvPlg 160 
                   G+YfA+d+ k  +Y++t+ ++ +                       ll+++V+lG    + ++d  ++   g  s+ + g++ +   v +  +P  
  KOO23260.1 1100 HGTYFAEDVGKNDQYVTTDVAHDTSGarkelherlfvkvrhpgrlhyLLVCRVSLGH--SVRTQDGQTSMDGGGGSIFATGDKRELAAVPRASPPVH 1194
                  ******************9999887789*****************************..66666666777778888888888888555556667766 PP

                  -E.EE-S--SSSEEE-EEEESSGGGEEEEEEEEEE CS
        PARP  161 ks.satkyesseleyneyvvydkeqvrlkYLlevk 194 
                      + +  ++    +e++v++ + ++++YL+ ++
  KOO23260.1 1195 FHsLVAETGGCIARFREFIVFHGSYIYPEYLVAYQ 1229
                  665777777788********************985 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.0         1   3.6e+03     119     167 ..     434     483 ..     406     493 .. 0.77
   2 !   39.4   0.0   1.1e-13     4e-10      41     196 ..     565     730 ..     554     780 .. 0.85

  Alignments for each domain:
  == domain 1  score: -3.0 bits;  conditional E-value: 1
                  HHHTTEEEST-S.GGGEEEEETTEEEE-STTTHEETTTSSEEEETTSSTS CS
  Pkinase_Tyr 119 LeskklvHrdla.arNvLlsenkvvkisDfGLardiekddeyvkkeeakl 167
                  Les + +Hr    arN +++ n  v  +  G ++++ +  ++v++ e+ l
   KOO23260.1 434 LESLHALHRAWKdARNDFIDANAAVEKGEPGATERLDEARDQVQRAESAL 483
                  77888888887449999999999999999999998877777766666655 PP

  == domain 2  score: 39.4 bits;  conditional E-value: 1.1e-13
                  SHHHHHHHHHHHHHHHTS-BTTB--EEEEEESSSS....EEEEEE--TTEBHHHHHHHTCTTTSBHHHHHHHHHHHHHHHHHHHHTTEEEST-SGGGE CS
  Pkinase_Tyr  41 teeekeelleeakimkklkhpnivkllgvctkeep....llivteyvkgGdLlkfLrkkekekltlkdllsfalqvAkGmeyLeskklvHrdlaarNv 134
                  ++e+ ++l +e++i+++l+hp i ++  +  +++      ++ +  ++ Gd++  L +k  +++ l ++     +vA ++++L+ + + H d+   Nv
   KOO23260.1 565 RSEDWRRLQREVRILSELRHPLIAEVECLFESSRAggrvAYMQLRHCDAGDMQAWLLQK--SPIALARKAA-LNDVALALRHLHGHGFAHGDVKLPNV 659
                  44558999***************999999884444455699*****************8..7777776654.579*********************** PP

                  EEEETT....EEEE-STTTHEETTTSSEEEETTSSTSGGGGS-HHHHHHSE.......EEHHHHHHHHHHHHH CS
  Pkinase_Tyr 135 Llsenk....vvkisDfGLardiekddeyvkkeeaklpvkWmapEslkekk.......ftsksDvWsfGvllw 196
                  L++ +      + ++Df  +rdi   +   + ++     ++ apE  +  +        t+++D +++Gv++ 
   KOO23260.1 660 LMAAQGegvwNACLADFETSRDI--ASMSAAPSSVLGTQQYRAPELSQPANssapapkPTHAADLFAYGVCVL 730
                  **99543334689**********..55555566777889999***99877777888889***********975 PP

>> Motile_Sperm  MSP (Major sperm protein) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.6   0.0   5.3e-05      0.19      20      70 ..      20      69 ..      13      77 .. 0.85
   2 !   14.1   0.0   8.9e-06     0.032      21      65 ..     151     194 ..     138     199 .. 0.85

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 5.3e-05
                  EEEEEEEEE-SSSSEEEEEEES-TTTEEEESSEEEETTTCEEEEEEEEESS CS
  Motile_Sperm 20 gtsklklkNtskkrvaFkvkttapkkyrvrPnvGiikpgesveitvtlkpl 70
                  g+ +++l N++++  aF v  ++  + +v P  G ++pg s+ei +  k +
    KOO23260.1 20 GEASVRLENPTEQLYAFLVLQSDD-QTTVIPLAGAVAPGGSIEIVIKNKGG 69
                  67889***************9999.67888***************766554 PP

  == domain 2  score: 14.1 bits;  conditional E-value: 8.9e-06
                   EEEEEEEE-S.SSSEEEEEEES-TTTEEEESSEEEETTTCEEEEEE CS
  Motile_Sperm  21 tsklklkNts.kkrvaFkvkttapkkyrvrPnvGiikpgesveitv 65 
                   ++ l+++N+s ++++aFkv +     ++  P++G++ p+ s+e++v
    KOO23260.1 151 SCDLRITNPSlQSHMAFKVVCEGE--CTFVPTTGFVPPNASIELHV 194
                   799******9456********988..9999************9986 PP

>> Kdo  Lipopolysaccharide kinase (Kdo/WaaP) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.8   0.0   1.6e-09   5.8e-06      57     172 ..     571     682 ..     550     690 .. 0.78

  Alignments for each domain:
  == domain 1  score: 25.8 bits;  conditional E-value: 1.6e-09
         Kdo  57 ravrEfrllkrLeeagvavpkpvaagavkvgleyrAlllterlegaqdLedllakwaelaeelkrallkavgrliaklhragvnHadlyaknillqqee 155
                 r  rE+r+l +L++  +a  + ++   ++  +++ A +  ++  +a d++++l + +++    ++a l++v+ + + lh  g  H+d+   n+l+ +++
  KOO23260.1 571 RLQREVRILSELRHPLIAEVECLFESSRA--GGRVAYMQLRHC-DAGDMQAWLLQ-KSPIALARKAALNDVALALRHLHGHGFAHGDVKLPNVLMAAQG 665
                 56677777777777777766666655443..334555555544.47899999997.668888999********************************** PP

         Kdo 156 eeeaeiwliDldkarlr 172
                 e+  +++l D++ +r  
  KOO23260.1 666 EGVWNACLADFETSRDI 682
                 ************99876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1237 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1568  (0.0874561); expected 358.6 (0.02)
Passed bias filter:                      535  (0.0298399); expected 358.6 (0.02)
Passed Vit filter:                       109  (0.00607954); expected 17.9 (0.001)
Passed Fwd filter:                        23  (0.00128284); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 1.12u 0.32s 00:00:01.44 Elapsed: 00:00:00.46
# Mc/sec: 8120.97
//
Query:       KOO23261.1  [L=844]
Description: hypothetical protein Ctob_000830 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.8e-18   67.2   0.0    2.8e-18   66.5   0.0    1.3  1  Dynamin_N  Dynamin family
    1.6e-10   40.6   1.0    2.5e-05   24.2   0.2    3.0  2  Arm        Armadillo/beta-catenin-like repeat
    0.00035   20.7   0.0    0.00098   19.3   0.0    1.8  1  U-box      U-box domain
     0.0012   18.9   0.0      0.009   16.1   0.0    2.3  1  MMR_HSR1   50S ribosome-binding GTPase
     0.0025   18.3  10.4     0.0086   16.6   1.3    3.9  4  HEAT_EZ    HEAT-like repeat
  ------ inclusion threshold ------
      0.017   15.3   0.2       0.13   12.5   0.0    2.5  2  zf-NOSIP   Zinc-finger of nitric oxide synthase-interacting p
      0.087   13.1   0.0      0.087   13.1   0.0    3.5  3  HEAT       HEAT repeat
        5.2    6.9   5.6         62    3.5   0.0    4.7  5  Maf_N      Maf N-terminal region


Domain annotation for each model (and alignments):
>> Dynamin_N  Dynamin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.5   0.0   1.3e-21   2.8e-18       1     167 [.     122     307 ..     122     308 .. 0.87

  Alignments for each domain:
  == domain 1  score: 66.5 bits;  conditional E-value: 1.3e-21
                 EEEEEBTTTTHHHHHHHHHTS--S---SSS---S-EEEEECCT---C........CS...SSEEEET-EB--CHHHHHHHHHHHHHHHTSSSS--SS.- CS
   Dynamin_N   1 iavvGsqSsGKSSvlnaLlgedilprgpnptTrrplelqlgeeeeas........eravkeelkekekkledfsevreeieketekiagankgiskk.v 90 
                 ++v+G+  sGKSS+l+ L   ++lprg+  +Tr p+ l+l++++ea+        +++ kee++   +      +vr+e+e+  +  +g + ++s +  
  KOO23261.1 122 VIVFGQETSGKSSLLERLAMMPLLPRGEDTCTRLPILLKLRHTKEAQlpvlvvrdSATGKEEVRRTVSLAGGQVDVRHEMERVLAAEQGGLTSVSMTrT 220
                 79*******************************************99****999888888888888999999999999999999999999999987669 PP

                 EEEEEEETTS-SEEEEE---B-SSSGTTS........HHHHHHH..STTEEEEEEE.ETTS-CCC-CHHHHHHHHSTTBTTEEEEEE- CS
   Dynamin_N  91 illkilsllvkgltlvDlPGldsvnkrdq........elvkeyi..kkadiilavt.sanhdlsnsealflarevdpkgkrtivvltk 167
                 i + ++s+ v+ + lvDlPGl  ++  d         +lvk ++  +k ++i++v+  a++  s+s  l+l +e+   ++ ti+v+t+
  KOO23261.1 221 IEVHVHSPAVPSIDLVDLPGLRLSAGSDAadmpekakALVKAQVeqHKGSAIFLVScTASTPPSQSLGLQLVEELG-LQRDTIGVVTM 307
                 9***********************999999*******99**99984344556666337778888888888888874.44558888875 PP

>> Arm  Armadillo/beta-catenin-like repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.9   0.0   1.8e-05     0.041       2      41 .]     654     693 ..     653     693 .. 0.91
   2 !   24.2   0.2   1.1e-08   2.5e-05       1      40 [.     694     733 ..     694     734 .. 0.93

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 1.8e-05
                 HHHHHHHHHTTHHHHHHHHTTTSSHHHHHHHHHHHHHHTT CS
         Arm   2 senkdavieaGavppLvrLLssedeevqeeAawALsNLaa 41 
                 ++ + a+  aGa+ppLv++L ++  e + +Aa AL+ La+
  KOO23261.1 654 DPMRVALAAAGALPPLVAMLGDGTAEERAAAAEALGKLAR 693
                 688999***************9999999999999999886 PP

  == domain 2  score: 24.2 bits;  conditional E-value: 1.1e-08
                 SHHHHHHHHHTTHHHHHHHHTTTSSHHHHHHHHHHHHHHT CS
         Arm   1 nsenkdavieaGavppLvrLLssedeevqeeAawALsNLa 40 
                 n+ nk a+  aGav++Lv+L +++d + + +Aa+AL+ +a
  KOO23261.1 694 NEANKAAMAAAGAVEALVALVRDGDAQGKANAAGALWTMA 733
                 5679*********************************877 PP

>> U-box  U-box domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.3   0.0   4.4e-07   0.00098       4      38 ..       3      37 ..       2      58 .. 0.84

  Alignments for each domain:
  == domain 1  score: 19.3 bits;  conditional E-value: 4.4e-07
                GGB-TTT-SB-SSEEEETTTEEEEHHHHHHHHTT. CS
       U-box  4 efldpitlelmkdPvilpsgvvvdrstiekhllsr 38
                e++d  t  l++dPv++ +g+v+drs++ k+   r
  KOO23261.1  3 ELIDAFTNDLIRDPVLATDGHVYDRSSLLKYFAAR 37
                78999***********************9998773 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.0     4e-06     0.009       2      86 ..     122     278 ..     121     306 .. 0.76

  Alignments for each domain:
  == domain 1  score: 16.1 bits;  conditional E-value: 4e-06
                 EEEEESTTSSHHHHHHHHHTSTEEESSSTTSSSSEEEEEEEETTEE..................................................... CS
    MMR_HSR1   2 vaivGrpNvGKStLinaltgekaivsdkpgtTrdinegrvklkgke..................................................... 47 
                 v+++G+  +GKS+L+ +l         +  +Tr ++  ++++ + e                                                     
  KOO23261.1 122 VIVFGQETSGKSSLLERLAMMPLLPRGEDTCTRLPILLKLRHTK-Eaqlpvlvvrdsatgkeevrrtvslaggqvdvrhemervlaaeqggltsvsmtr 219
                 789****************9999999999999999999998444.23588888888889999999999999999999999******************* PP

                 .............EEEEECGGC..........SSHHHHHHHHHHHHHHHHCTSEEEEEEETT CS
    MMR_HSR1  48 .............ielvDtpGl..........iegaseekglgkaflaleeadlillvvdas 86 
                              i lvD+pGl          +   ++ k l ka  +  +   ++++v+++
  KOO23261.1 220 tievhvhspavpsIDLVDLPGLrlsagsdaadM--PEKAKALVKAQVEQHK-GSAIFLVSCT 278
                 *********************654333332221..2333344444444333.4455555544 PP

>> HEAT_EZ  HEAT-like repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.4       1.4   3.1e+03      42      51 ..     441     450 ..     441     450 .. 0.83
   2 ?   -3.2   0.0       5.8   1.3e+04      27      50 ..     530     549 ..     526     549 .. 0.75
   3 !   16.6   1.3   3.8e-06    0.0086      19      55 .]     655     691 ..     634     691 .. 0.82
   4 !   15.4   2.2   8.6e-06     0.019       2      52 ..     679     729 ..     678     729 .. 0.91

  Alignments for each domain:
  == domain 1  score: -1.2 bits;  conditional E-value: 1.4
     HEAT_EZ  42 deVRaaAaga 51 
                 de RaaA++a
  KOO23261.1 441 DELRAAACRA 450
                 6889999997 PP

  == domain 2  score: -3.2 bits;  conditional E-value: 5.8
     HEAT_EZ  27 peilpaLlalLnddsd.eVRaaAag 50 
                 ++i++ L       ++ +VR++ ++
  KOO23261.1 530 EAIVAKLQ-----TQAsHVRGTFVW 549
                 56777777.....777799999887 PP

  == domain 3  score: 16.6 bits;  conditional E-value: 3.8e-06
     HEAT_EZ  19 pellqplvpeilpaLlalLnddsdeVRaaAagaLgnl 55 
                 p  ++++   +lp+L+a+L d  +e RaaAa aLg+l
  KOO23261.1 655 PMRVALAAAGALPPLVAMLGDGTAEERAAAAEALGKL 691
                 4447889999*************************97 PP

  == domain 4  score: 15.4 bits;  conditional E-value: 8.6e-06
     HEAT_EZ   2 rvRraAawaLGrlaggepellqplvpeilpaLlalLnddsdeVRaaAagaL 52 
                 ++R+aAa aLG la +e++  + +   ++ aL+al +d ++  +a+AagaL
  KOO23261.1 679 EERAAAAEALGKLARNEANKAAMAAAGAVEALVALVRDGDAQGKANAAGAL 729
                 68999*********9*****99999999999999999877777*******8 PP

>> zf-NOSIP  Zinc-finger of nitric oxide synthase-interacting protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   5.6e-05      0.13      50      72 ..      13      35 ..       7      38 .. 0.88
   2 ?   -1.0   0.2      0.91     2e+03       2      31 ..     721     754 ..     720     774 .. 0.68

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 5.6e-05
    zf-NOSIP 50 crdpvltedgylyekeaileyil 72
                 rdpvl+ dg++y++ ++l+y  
  KOO23261.1 13 IRDPVLATDGHVYDRSSLLKYFA 35
                69*******************76 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 0.91
    zf-NOSIP   2 gknctagavytyhe....kkkdtaasgygtqsvr 31 
                 gk  +aga++t        k   aa+gy  ++ r
  KOO23261.1 721 GKANAAGALWTMAAgdvaIKAAMAAAGYSLRDAR 754
                 8888999999986411214666788888776655 PP

>> HEAT  HEAT repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.6   0.9         8   1.8e+04      16      23 ..     443     450 ..     442     450 .. 0.82
   2 ?   13.1   0.0   3.9e-05     0.087       2      29 ..     666     693 ..     665     694 .. 0.89
   3 ?   -1.0   0.1       1.4   3.1e+03       4      28 ..     709     733 ..     706     735 .. 0.71

  Alignments for each domain:
  == domain 1  score: -4.6 bits;  conditional E-value: 8
                 HHHHHHHH CS
        HEAT  16 VReaAaka 23 
                  R+aA++a
  KOO23261.1 443 LRAAACRA 450
                 599**987 PP

  == domain 2  score: 13.1 bits;  conditional E-value: 3.9e-05
                 HHHHHHHHT-SSHHHHHHHHHHHHHHHH CS
        HEAT   2 lPlllkllsDpspeVReaAakaLgalae 29 
                 lP+l+ +l D  +e R+aAa+aLg+la+
  KOO23261.1 666 LPPLVAMLGDGTAEERAAAAEALGKLAR 693
                 8*********66666***********96 PP

  == domain 3  score: -1.0 bits;  conditional E-value: 1.4
                 HHHHHHT-SSHHHHHHHHHHHHHHH CS
        HEAT   4 lllkllsDpspeVReaAakaLgala 28 
                 +l+ l +D +++  ++Aa aL ++a
  KOO23261.1 709 ALVALVRDGDAQGKANAAGALWTMA 733
                 5667778888888888888887776 PP

>> Maf_N  Maf N-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.3       4.3   9.6e+03      25      32 ..      62      69 ..      58      70 .. 0.85
   2 ?   -3.3   0.3       3.5   7.9e+03      28      32 ..     706     710 ..     703     711 .. 0.86
   3 ?    1.8   0.0     0.094   2.1e+02      22      31 ..     757     766 ..     752     766 .. 0.91
   4 ?   -0.4   0.0      0.44   9.8e+02      22      31 ..     767     776 ..     767     776 .. 0.92
   5 ?    3.5   0.0     0.028        62      20      31 ..     805     816 ..     801     818 .. 0.87

  Alignments for each domain:
  == domain 1  score: -3.5 bits;  conditional E-value: 4.3
       Maf_N 25 pEDAvEaL 32
                p D+v aL
  KOO23261.1 62 PADVVAAL 69
                99***999 PP

  == domain 2  score: -3.3 bits;  conditional E-value: 3.5
       Maf_N  28 AvEaL 32 
                 AvEaL
  KOO23261.1 706 AVEAL 710
                 9***9 PP

  == domain 3  score: 1.8 bits;  conditional E-value: 0.094
       Maf_N  22 gLtpEDAvEa 31 
                 g+t+ DA+Ea
  KOO23261.1 757 GFTCKDAREA 766
                 79*******8 PP

  == domain 4  score: -0.4 bits;  conditional E-value: 0.44
       Maf_N  22 gLtpEDAvEa 31 
                 g+t+ D++Ea
  KOO23261.1 767 GFTCKDVREA 776
                 68*******8 PP

  == domain 5  score: 3.5 bits;  conditional E-value: 0.028
       Maf_N  20 aLgLtpEDAvEa 31 
                 a g+t+ DA+Ea
  KOO23261.1 805 AAGFTCKDAREA 816
                 779********8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (844 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       736  (0.0410508); expected 358.6 (0.02)
Passed bias filter:                      452  (0.0252106); expected 358.6 (0.02)
Passed Vit filter:                        56  (0.00312343); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.68u 0.25s 00:00:00.93 Elapsed: 00:00:00.41
# Mc/sec: 6198.88
//
Query:       KOO23262.1  [L=68]
Description: taurine catabolism dioxygenase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    0.00027   20.9   0.0    0.00027   20.9   0.0    1.0  1  TauD      Taurine catabolism dioxygenase TauD, TfdA family


Domain annotation for each model (and alignments):
>> TauD  Taurine catabolism dioxygenase TauD, TfdA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.9   0.0   1.5e-08   0.00027     114     161 ..       1      48 [.       1      67 [. 0.78

  Alignments for each domain:
  == domain 1  score: 20.9 bits;  conditional E-value: 1.5e-08
        TauD 114 lLhcleapatGGetpfvDgraaynaLpeelpellegltavrvyyhyrg 161
                 +++c++ +++GG+tp+  +  a+  L+ ++p+   +l +  v y ++ 
  KOO23262.1   1 MFFCEQSAPSGGATPIIESHLAAAYLRSRHPDVAARLEQKGVRYVRIM 48 
                 8********************************977766666555544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (68 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       219  (0.0122148); expected 358.6 (0.02)
Passed bias filter:                      199  (0.0110993); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.34u 0.21s 00:00:00.55 Elapsed: 00:00:00.37
# Mc/sec: 548.51
//
Query:       KOO23263.1  [L=271]
Description: hypothetical protein Ctob_000834 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
  ------ inclusion threshold ------
      0.016   15.5   0.8         10    6.5   0.0    3.5  3  ABC_tran_CTD  ABC transporter C-terminal domain
      0.028   14.2   0.7        4.4    7.1   0.1    2.6  3  zf-MIZ        MIZ/SP-RING zinc finger
      0.031   13.6   0.6        3.2    7.0   0.3    2.2  2  DUF4763       Domain of unknown function (DUF4763)
        2.2    8.6   7.1        9.2    6.6   0.1    3.8  4  Lzipper-MIP1  Leucine-zipper of ternary complex factor MIP1


Domain annotation for each model (and alignments):
>> ABC_tran_CTD  ABC transporter C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.0      0.49   2.2e+03      17      30 ..      42      55 ..      36      61 .. 0.76
   2 ?    3.5   1.5     0.019        84      15      35 ..     150     170 ..     114     179 .. 0.64
   3 ?    6.5   0.0    0.0023        10      17      65 ..     215     264 ..     208     265 .. 0.89

  Alignments for each domain:
  == domain 1  score: -1.0 bits;  conditional E-value: 0.49
  ABC_tran_CTD 17 IeaLEeeiaeleae 30
                  +++LE + a++ a+
    KOO23263.1 42 LAKLEGKVAAMAAQ 55
                  57888888888777 PP

  == domain 2  score: 3.5 bits;  conditional E-value: 0.019
  ABC_tran_CTD  15 aeIeaLEeeiaeleaeladpe 35 
                   + Ie LEe  ++le++ ++++
    KOO23263.1 150 EYIELLEETSSQLEQQWQAAS 170
                   346666666666666666555 PP

  == domain 3  score: 6.5 bits;  conditional E-value: 0.0023
  ABC_tran_CTD  17 IeaLEeeiaeleaeladpelysdp.eklaelsaeleeleaeLeelyerWe 65 
                   + +LE++ ++l a+l  ++      ++  +l++  + le+   +l+ +W 
    KOO23263.1 215 LSRLEAKVEDLSAKLGTAAPARCVgDACLDLQTYVAMLEESVVTLEKQWA 264
                   679*************9998877789999999999999999999999995 PP

>> zf-MIZ  MIZ/SP-RING zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.0       1.5   6.9e+03      21      35 ..      64      78 ..      62      82 .. 0.71
   2 ?    7.1   0.1   0.00097       4.4      19      41 ..     138     160 ..     130     169 .. 0.81
   3 ?    4.7   0.0    0.0055        25      20      38 ..     236     254 ..     232     264 .. 0.83

  Alignments for each domain:
  == domain 1  score: -3.1 bits;  conditional E-value: 1.5
                --SS--EEHHHHHHH CS
      zf-MIZ 21 CkHlqCfdlesylel 35
                C    C+ l+ y+++
  KOO23263.1 64 CIDDACLPLSEYISV 78
                555578888888876 PP

  == domain 2  score: 7.1 bits;  conditional E-value: 0.00097
                 TT--SS--EEHHHHHHHHHHS-- CS
      zf-MIZ  19 ekCkHlqCfdlesylelnertet 41 
                 ++C+   C+d++ y+el e+t++
  KOO23263.1 138 QQCNAEMCMDVQEYIELLEETSS 160
                 5799999*********9998876 PP

  == domain 3  score: 4.7 bits;  conditional E-value: 0.0055
                 T--SS--EEHHHHHHHHHH CS
      zf-MIZ  20 kCkHlqCfdlesylelner 38 
                 +C    C+dl++y+ + e+
  KOO23263.1 236 RCVGDACLDLQTYVAMLEE 254
                 588889********99876 PP

>> DUF4763  Domain of unknown function (DUF4763)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.0   0.3   0.00072       3.2      58     104 ..     118     164 ..     114     170 .. 0.89
   2 ?    4.6   0.0    0.0039        17      57      91 ..     214     248 ..     186     263 .. 0.82

  Alignments for each domain:
  == domain 1  score: 7.0 bits;  conditional E-value: 0.00072
     DUF4763  58 lekiKqrvlelrskLalnvpecPeidecvdedlelelltseqpeile 104
                 l+k++++v+ l  +  +++p +++++ c+d ++ +ell++++ ++ +
  KOO23263.1 118 LSKLEAKVEALCVRYDVPMPQQCNAEMCMDVQEYIELLEETSSQLEQ 164
                 678888999999999999***********************999976 PP

  == domain 2  score: 4.6 bits;  conditional E-value: 0.0039
     DUF4763  57 elekiKqrvlelrskLalnvpecPeidecvdedle 91 
                  l++++++v+ l  kL++  p  +  d c+d ++ 
  KOO23263.1 214 YLSRLEAKVEDLSAKLGTAAPARCVGDACLDLQTY 248
                 58999************************998875 PP

>> Lzipper-MIP1  Leucine-zipper of ternary complex factor MIP1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.0       0.4   1.8e+03      49      71 ..      65      87 ..      43      88 .. 0.68
   2 ?    2.3   0.5     0.047   2.1e+02      59      73 ..     151     165 ..     119     170 .. 0.83
   3 ?   -0.6   0.0      0.38   1.7e+03      68      81 ..     216     229 ..     215     232 .. 0.73
   4 ?    6.6   0.1     0.002       9.2      59      74 ..     248     263 ..     240     268 .. 0.85

  Alignments for each domain:
  == domain 1  score: -0.7 bits;  conditional E-value: 0.4
  Lzipper-MIP1 49 lpkkakellkeiallEeevvkLE 71
                  ++++   l + i++lE+  v+LE
    KOO23263.1 65 IDDACLPLSEYISVLEAAAVELE 87
                  55555556677899999988888 PP

  == domain 2  score: 2.3 bits;  conditional E-value: 0.047
  Lzipper-MIP1  59 eiallEeevvkLEqk 73 
                    i+llEe+ ++LEq+
    KOO23263.1 151 YIELLEETSSQLEQQ 165
                   4999*********98 PP

  == domain 3  score: -0.6 bits;  conditional E-value: 0.38
  Lzipper-MIP1  68 vkLEqkllsLyrkl 81 
                   ++LE k+++L  kl
    KOO23263.1 216 SRLEAKVEDLSAKL 229
                   57888888887765 PP

  == domain 4  score: 6.6 bits;  conditional E-value: 0.002
  Lzipper-MIP1  59 eiallEeevvkLEqkl 74 
                    +a+lEe vv LE++ 
    KOO23263.1 248 YVAMLEESVVTLEKQW 263
                   59***********996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (271 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       477  (0.0266049); expected 358.6 (0.02)
Passed bias filter:                      386  (0.0215294); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.42u 0.24s 00:00:00.65 Elapsed: 00:00:00.38
# Mc/sec: 2164.01
//
Query:       KOO23264.1  [L=241]
Description: chromosome segregation protein smc [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.3e-16   60.7   0.0    3.4e-11   43.0   0.0    2.1  2  SMC_N     RecF/RecN/SMC N terminal domain
    8.9e-05   22.4   0.0     0.0001   22.2   0.0    1.2  1  AAA_21    AAA domain, putative AbiEii toxin, Type IV TA syste


Domain annotation for each model (and alignments):
>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.0   6.9e-07    0.0062     135     155 ..      87     139 ..       7     143 .. 0.67
   2 !   43.0   0.0   3.8e-15   3.4e-11     156     218 ..     171     232 ..     166     234 .. 0.94

  Alignments for each domain:
  == domain 1  score: 16.0 bits;  conditional E-value: 6.9e-07
                 T................................CS-HHHHHHHHHHHHHHHHC CS
                 x................................xxxxxxxxxxxxxxxxxxxx RF
       SMC_N 135 e................................lLSgGektLvalaLlfAiqk 155
                 +                                 LSgG+++Lva+aL +A+q+
  KOO23264.1  87 DaaleyadvpsilfaegvsiavkpphgewtrfeILSGGQQALVAVALTMALQE 139
                 1444444444444444444446666666666669****************996 PP

  == domain 2  score: 43.0 bits;  conditional E-value: 3.8e-15
                 CS--SEEEECTTTTTS-HHHHHHHHHHHHHHCTTSEEEEE-SSHHHCCC-SCEEEEEEEETTE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N 156 vkpaplyllDeidaaLDeknvkkvaellkeksknaQfivislreemlekadklvgvtkvengv 218
                 ++p p++l+DeidaaLD ++v+++ae ++++    Q + +s+r+e++e + +lvg+++v+ g+
  KOO23264.1 171 ASPPPFVLFDEIDAALDTQKVRALAEHVRARA-AGQTVFVSHRKELIEASGRLVGTFMVDGGT 232
                 6799*************************998.89***********************99876 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.2   0.0   1.2e-08    0.0001     219     302 ..      60     216 ..       8     217 .. 0.80

  Alignments for each domain:
  == domain 1  score: 22.2 bits;  conditional E-value: 1.2e-08
      AAA_21 219 r...........................................gvvflengdgqelparelSdGtkrllalltallralkkg................ 258
                 r                                            ++ +++++g ++ +  lS G++ l a+++ ++ + +                  
  KOO23264.1  60 RsrrflrgaqaisdalratfrslckhgdaaleyadvpsilfaegVSIAVKPPHGEWTRFEILSGGQQALVAVALTMALQEGTYlerhaereagertals 158
                 244444445555555555666666666666777777777888888999999******************77777777777666**************** PP

      AAA_21 259 ................sllliDEpEngLHPkllrrllellkelsrngaQviltTHSplll 302
                                 +++l+DE+++ L+ + +r l+e +++ ++  +Q ++++H  +l+
  KOO23264.1 159 egyaiegggeadasppPFVLFDEIDAALDTQKVRALAEHVRARAA--GQTVFVSHRKELI 216
                 ****************************************88888..9*******76665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (241 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       589  (0.0328518); expected 358.6 (0.02)
Passed bias filter:                      380  (0.0211947); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.42u 0.23s 00:00:00.65 Elapsed: 00:00:00.39
# Mc/sec: 1870.57
//
Query:       KOO23265.1  [L=387]
Description: chromosome segregation ATPase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.5e-18   66.3   0.0    3.4e-18   65.9   0.0    1.3  1  SMC_N     RecF/RecN/SMC N terminal domain
    1.9e-08   35.1   0.0    2.2e-08   34.8   0.0    1.5  1  AAA_23    AAA domain
    0.00014   21.5   0.0    0.00024   20.8   0.0    1.4  1  AAA_29    P-loop containing region of AAA domain
     0.0046   16.9   0.0      0.016   15.2   0.0    1.9  1  NACHT     NACHT domain
  ------ inclusion threshold ------
      0.021   15.3   0.0      0.061   13.8   0.0    1.7  1  ABC_tran  ABC transporter
      0.023   15.0   2.7       0.27   11.5   0.4    2.9  2  AAA_22    AAA domain
      0.038   13.7   0.0      0.053   13.2   0.0    1.1  1  AAA_15    AAA ATPase domain
      0.052   13.6   0.3      0.099   12.7   0.3    1.4  1  DUF4427   Protein of unknown function (DUF4427)
       0.07   12.9   0.1        0.1   12.4   0.1    1.2  1  AAA_21    AAA domain, putative AbiEii toxin, Type IV TA syste
       0.11   12.6   3.0       0.19   11.9   0.1    2.5  2  AAA_33    AAA domain


Domain annotation for each model (and alignments):
>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.9   0.0   1.9e-21   3.4e-18       2     129 ..      21     139 ..      20     305 .. 0.93

  Alignments for each domain:
  == domain 1  score: 65.9 bits;  conditional E-value: 1.9e-21
                 EEEEEEESETTEECEEEEEETTSSEEEEEESTTSSHHHHHHHHHHHCTT.TTTTTTCHCCCCCC--BTTCSSTTEEEEEEEEEETTEESSSSSSCEEEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N   2 lkrleienFksyagktvilpfsksftaivGpNGSGKsnlldAilFvLGersakklrseklsdlihkskekasvkkaeveitfdnedkklkiekeevsis 100
                 l+r+  ++Fks+ag+ v++pf+ + t ivGpNGSGKs l++ ++F L   s+ +lr+  l +l+++   ++ + +a v++tf + +         ++++
  KOO23265.1  21 LHRVHFKDFKSFAGHVVVGPFDARTTTIVGPNGSGKSCLVEGVCFALAVGSQ-QLRAPALGSLVNH---GSTTGNAAVAVTFAEAGGP-----RCLVVQ 110
                 78999*******************************************8666.************9...889999********99998.....789999 PP

                 EEEETTSEEEEEETTEEE-HHHHHHHHHC CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N 101 rrvkrkgeseykingkevtkkevselles 129
                 rr++ + +se +   +++++ e+++ l++
  KOO23265.1 111 RRIVGGCRSECTCAATSMKRDELRHALRR 139
                 99999999999999999999999999986 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.8   0.0   1.2e-11   2.2e-08       1      85 [.      23     104 ..      23     360 .. 0.75

  Alignments for each domain:
  == domain 1  score: 34.8 bits;  conditional E-value: 1.2e-11
      AAA_23   1 kLkienfrsf.rdqei.dFskgltlItGpNGaGKTTildAiklaLygetprlsrksgrgfeksdveiesegkvkayveltfenkdgr 85 
                 +++ + f+sf +++ +  F+   t I+GpNG+GK+ +++ +++aL   +++l+    ++++++       ++++a v +tf   +g 
  KOO23265.1  23 RVHFKDFKSFaGHVVVgPFDARTTTIVGPNGSGKSCLVEGVCFALAVGSQQLRAPALGSLVNHGS-----TTGNAAVAVTFAEAGGP 104
                 6899******555555799**************************55456666655333333332.....24556666666666664 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.8   0.0   1.4e-07   0.00024       2      46 ..      22      67 ..      21      76 .. 0.72

  Alignments for each domain:
  == domain 1  score: 20.8 bits;  conditional E-value: 1.4e-07
      AAA_29  2 krlqlvNWgtfdghti..eidlkgatlltGpsGsGKSTllDAiqalL 46
                +r++  +  +f gh++  ++d + +t ++Gp+GsGKS l+  + + L
  KOO23265.1 22 HRVHFKDFKSFAGHVVvgPFDAR-TTTIVGPNGSGKSCLVEGVCFAL 67
                66777777888886662356644.6***************9887655 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.0   8.6e-06     0.016       1      30 [.      44      73 ..      44      83 .. 0.90

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 8.6e-06
                SCEEEEC-TTTCHHHHHHHHHHHHCTS-SC CS
       NACHT  1 rlvilqGeaGsGKTtLlqklalawaegklp 30
                r+  + G++GsGK+ L++++++a+a g ++
  KOO23265.1 44 RTTTIVGPNGSGKSCLVEGVCFALAVGSQQ 73
                6889*********************99876 PP

>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.0   3.4e-05     0.061      12      29 ..      44      61 ..      38      73 .. 0.88

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 3.4e-05
                SEEEEEESTTSSHHHHHH CS
                xxxxxxxxxxxxxxxxxx RF
    ABC_tran 12 ekvaivGenGaGKStLlk 29
                +++ ivG+nG+GKS L++
  KOO23265.1 44 RTTTIVGPNGSGKSCLVE 61
                5789***********986 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.4   0.00015      0.27       5     112 ..      43     206 ..      41     220 .. 0.79
   2 ?    1.1   0.1      0.24   4.3e+02      75     105 ..     328     368 ..     254     380 .. 0.62

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.00015
      AAA_22   5 agilvvtGesGtGKTtllrrlleqldeeakaee.................................erpevv.....fvtlpsst.sskdllrellral 64 
                 a+ ++++G+ G+GK+ l++ +   l   +++ +                                  ++++v     ++t+++ + ++++l+++l r l
  KOO23265.1  43 ARTTTIVGPNGSGKSCLVEGVCFALAVGSQQLRapalgslvnhgsttgnaavavtfaeaggprclvVQRRIVggcrsECTCAATSmKRDELRHALRRLL 141
                 67789*************988777765555555779999999999999999999999999877777444444788888888887779999999999999 PP

      AAA_22  65 glelka..............erlsseellealeqalraravielliiDEaqh.lr.s..eealeeL 112
                  l+ +               + +s +ell+ le  l +++  ++ +++Ea + l  s     lee+
  KOO23265.1 142 ALDIDQperfvvhqtsvmsvASKSPSELLQFLEGVLGTAGL-RAGVLEEAARsLElSeaVSSLEEI 206
                 99998899999999999999999999999999999999999.999999999988552445555555 PP

  == domain 2  score: 1.1 bits;  conditional E-value: 0.24
      AAA_22  75 seellealeqalrarav......ielliiDEaqhlr....s 105
                  +e+++a + a+ + +v       +   i+Eaq l     s
  KOO23265.1 328 ASECRTAKAAAAVRMQVhalgeeERTAAIEEAQALAtarrS 368
                 22333222222222222344445578999999998654432 PP

>> AAA_15  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.0     3e-05     0.053       4      41 ..      22      61 ..      20      65 .. 0.77

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 3e-05
      AAA_15  4 kkikikNFRslkd..veidlseeltvliGkNnsGKSsile 41
                ++++ k F+s+    v  +++  +t+++G+N+sGKS ++e
  KOO23265.1 22 HRVHFKDFKSFAGhvVVGPFDARTTTIVGPNGSGKSCLVE 61
                67888888888873222256667*************8876 PP

>> DUF4427  Protein of unknown function (DUF4427)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.3   5.5e-05     0.099      57      90 ..     298     331 ..     286     344 .. 0.87

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 5.5e-05
     DUF4427  57 rrvkvskeGrylldlnlasvdrdlrrkealakel 90 
                   +  s  Gr l+ l + s++ +lrrk+ala+e 
  KOO23265.1 298 AHLASSAAGRMLARLREESTRMQLRRKQALASEC 331
                 55667889***********************985 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.1   5.6e-05       0.1       2      20 ..      46      64 ..      45      92 .. 0.81

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 5.6e-05
      AAA_21  2 nvliGpNgsGKSnLLdald 20
                + ++GpNgsGKS L +   
  KOO23265.1 46 TTIVGPNGSGKSCLVEGVC 64
                78**********9988765 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.1    0.0001      0.19       4      32 ..      48      78 ..      46     165 .. 0.63
   2 ?    0.3   0.5       0.4   7.1e+02      25      47 ..     251     282 ..     238     368 .. 0.49

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 0.0001
      AAA_33  4 lvGlpGsGKstlaerllkklg..avllssdt 32
                +vG++GsGKs l+e+++ +l+   + l+ ++
  KOO23265.1 48 IVGPNGSGKSCLVEGVCFALAvgSQQLRAPA 78
                79**************977766555566664 PP

  == domain 2  score: 0.3 bits;  conditional E-value: 0.4
      AAA_33  25 avllssdtlrrrlfgtdqqskt.........d 47 
                 + l+ssd+ r++ + t q+++          +
  KOO23265.1 251 CSLVSSDARRKAARCTLQEREGvlvsaregaQ 282
                 55566665444444444443332222222220 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (387 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       835  (0.0465726); expected 358.6 (0.02)
Passed bias filter:                      410  (0.022868); expected 358.6 (0.02)
Passed Vit filter:                        49  (0.002733); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.54u 0.25s 00:00:00.79 Elapsed: 00:00:00.41
# Mc/sec: 2808.75
//
Query:       KOO23266.1  [L=230]
Description: limb region 1-like protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
      8e-19   68.0   0.1    1.1e-18   67.6   0.1    1.1  1  Hint           Hint module
  ------ inclusion threshold ------
      0.049   12.5   0.0      0.072   11.9   0.0    1.2  1  Pestivirus_E2  Pestivirus envelope glycoprotein E2


Domain annotation for each model (and alignments):
>> Hint  Hint module
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.6   0.1   1.2e-22   1.1e-18      11     155 ..      50     189 ..      40     194 .. 0.94

  Alignments for each domain:
  == domain 1  score: 67.6 bits;  conditional E-value: 1.2e-22
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
        Hint  11 gCFpgestvtvedgeqkslseLepGdkVlavdesgevvfsevllfldrdseqraefveietengekltlTpaHLvfvsenekssseeeeavfaskvreg 109
                  CFp ++tv +++g+++sl+ +++Gd+++ + ++g +++++v +   +d+ +  +f++++t  g+++tlT++H v v  +++++        a +++ g
  KOO23266.1  50 PCFPSSATVVLASGAKRSLDAVQVGDEIVVATAEGVLTTDTVSALSLADEDAVSTFLVLSTAAGRNVTLTEEHHVPVGPSCCATL-----KTAGEIELG 143
                 5*****************************************************************************9998877.....68******* PP

                 XXXXX..XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXX CS
        Hint 110 dyvlvedtaskelrpskvvsvsteektGvyAPlTehGti.vVdgvla 155
                 d++ + +++++   ps v++  t  k+G+ +P+  +G+  ++dg+++
  KOO23266.1 144 DTLWL-SSTTGAAMPSAVTKMATASKKGLHSPVMTNGHFpLIDGIVT 189
                 *****.88899999***********************9878999876 PP

>> Pestivirus_E2  Pestivirus envelope glycoprotein E2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   8.1e-06     0.072     178     255 ..       7      87 ..       2     100 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 8.1e-06
                    EEEEE-STTT-EEEEE-B.--SS-EEEEEETTEE.ESS.STTSSSSS-SEEEESSSSSBEE-----SEETTEEE-SS-SEE CS
  Pestivirus_E2 178 hncilggnwtcvpgdqll.ykggsiesckwcgyq.fke.seglphypigkcklenetgyrlvdstscnregvaivpqgtlk 255
                        l + ++ vpg q++   ggs+ ++  + y+ +ke s+glp +p     +    + r +d+  +  e v    +g l 
     KOO23266.1   7 SLGNLQAAFASVPGVQIVvLTGGSVSTASIVTYEsVKEnSDGLPCFPSSATVVLASGAKRSLDAVQVGDEIVVATAEGVLT 87 
                    5556778899*****985268***********973454499********99999999999****99999999988888876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (230 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       342  (0.0190752); expected 358.6 (0.02)
Passed bias filter:                      243  (0.0135535); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.39u 0.22s 00:00:00.61 Elapsed: 00:00:00.37
# Mc/sec: 1848.71
//
Query:       KOO23267.1  [L=441]
Description: leishmanolysin-like peptidase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.4e-48  165.9   0.2    5.3e-44  150.8   0.2    3.1  2  Peptidase_M8  Leishmanolysin


Domain annotation for each model (and alignments):
>> Peptidase_M8  Leishmanolysin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.5   0.0   1.9e-05      0.34     105     146 ..      70     108 ..      52     126 .. 0.84
   2 !  150.8   0.2     3e-48   5.3e-44     147     366 ..     159     423 ..     148     432 .. 0.86

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 1.9e-05
  Peptidase_M8 105 LteekRnilvktllpralqlhaerLkvrqvqgkikvtgmdgd 146
                   L ++++ +l++tl+p+a+ ++   L+v +vqg+++v     +
    KOO23267.1  70 LDSARQSFLMNTLVPAAVSVLSRALSVVRVQGPLRVNR---N 108
                   7789999****************************943...3 PP

  == domain 2  score: 150.8 bits;  conditional E-value: 3e-48
  Peptidase_M8 147 vCsefkvPekhvtvGvsdaDlvlyvasv.....Pse..egvlawavtCqlfsdgrpvvgvinipaasissayd..qlvvrvvahelahaLGfsktlf 234
                    C+          +Gvs+aD+vlyv+s      P++  +g la+a tC  ++ +rp++g+ n+ +  +ss+    + ++ +++hel haLGfs++ +
    KOO23267.1 159 TCNPSSCTTSANGTGVSNADFVLYVTSAttgscPASagDGTLAYASTCVRDQYDRPIMGQANFCPVALSSSSSawEDQLSTAVHELLHALGFSTDSW 255
                   56666666777789***********975222226657789*************************99999887677899*****************9 PP

  Peptidase_M8 235 eelelieevknl.rkrdy.................................kvpvlnsptvvakaReqygCptLeyleleDqGga..gtagshlkkR 295
                     ++  +      r+ d                                   v+ +++p+vva+aR+  gC+tLe+ ele+q  +  +  gsh+++R
    KOO23267.1 256 ALFRHQDGTPRTpRGADGlpaltptlctdgvtrtvrapsastllvrqergvIVNRMVTPKVVAVARDLLGCSTLEGPELENQPTTsgSCFGSHWEQR 352
                   988887766554255555888***************************9999999**************************9776214679****** PP

  Peptidase_M8 296 nakdelmagavsag.lysaLtlavfeDlGfYkadfskaevlvWgnnagCdflskkCled.nitewpelfCnst 366
                    + +e+ma+++s   + saLtla++eD G Y+a++s+ae lv+g+nagC++++++C+++ ++++  + fCn  
    KOO23267.1 353 LFPQEMMASTASHNsFISALTLAALEDSGWYRANWSMAEPLVYGRNAGCAWATERCIDSsGVAQ--DGFCNVA 423
                   **********9998688***************************************87513444..5588755 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (441 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       442  (0.0246528); expected 358.6 (0.02)
Passed bias filter:                      268  (0.0149478); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.24s 00:00:00.71 Elapsed: 00:00:00.38
# Mc/sec: 3519.49
//
Query:       KOO23268.1  [L=953]
Description: polycystic kidney disease protein-2, partial [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    5.2e-28   97.9  14.7    1.2e-26   93.4  15.8    2.1  2  PKD_channel  Polycystin cation channel
    9.9e-11   41.3  17.5    9.9e-11   41.3  17.5    2.4  2  Ion_trans    Ion transport protein


Domain annotation for each model (and alignments):
>> PKD_channel  Polycystin cation channel
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.8   0.0     0.016   1.5e+02       3      28 ..     180     205 ..     178     210 .. 0.88
   2 !   93.4  15.8   1.3e-30   1.2e-26     144     422 ..     429     708 ..     419     712 .. 0.90

  Alignments for each domain:
  == domain 1  score: 0.8 bits;  conditional E-value: 0.016
                  -STT--SHHHHHHHHTTHHHHTTTTS CS
  PKD_channel   3 glatvtdlediykwlesvLlpaltsn 28 
                   ++t+ + +diy+w ++vL p++  +
   KOO23268.1 180 TFETIRRASDIYEWGNQVLWPGFFGD 205
                  5899*****************99665 PP

  == domain 2  score: 93.4 bits;  conditional E-value: 1.3e-30
                  HHHHHHTTSS-TTEEEEEEEEEEEETTTTEEEEEEEEEE--TTSS-EEEEEEEEE------SHHHHHHHHHHHHHHHHHHHHHHHHH-------.--- CS
  PKD_channel 144 laeLkeknWLDrrtravfvdftlYnadinlfcvvtllvEvpalGgvlpsvsvqsvkLlryvtklslflllievvfvvfvlyfvveeilkirker.asy 240
                   ++Lk+ + LD+r+r++ + + l +  +++ +  tl++E++alG + ps  v++  L + +      +ll   + +v+v +f++ e++++ +++   y
   KOO23268.1 429 WNDLKRGHYLDSRSRVLTITLQLNSNHVGVRSRFTLMLELTALGAIFPSYDVETRILDEAAL---DDMLLYAQISMVMVAFFAMLELIELIRQGpIDY 523
                  579**************************************************987765443...34455567888999999999999999999899* PP

                  ----HHHHHH..HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-SSS----HHHHHHHHHHHHHHHHHHHHHHHGGGGG.-------------------- CS
  PKD_channel 241 lrsvwnlldl..aivvlsvvlivlailrevlakkllkkveaekeefldFrevaqldqllriilavlvflttlkllkv.lrfnktlslltktlaralkd 335
                  ++++w l+d    i+ l v   v+++ ++++      ++ a+   f d++++ +   + ++ la+ v+l + k+ k+ +++++++ l++++l +a+ d
   KOO23268.1 524 VQNFWHLMDWgnYIIFLQVYFQVVQVRQTIENPDCSSFLCANIGYFDDWKAMGEYR-ICKQYLALCVCLQLFKITKFtSQLVPKMGLMSNVLRHAAID 620
                  *********7557999999999999999999999999999**********999986.567789*************9568****************** PP

                  ----HHHHHHHHHHHHHHHHHHSSSS-STTSSHHHHHHHHHHHHTT---HHHH.HHH-TTHHHHHHHHHHHHHHHHHHHHHHHHHHT- CS
  PKD_channel 336 vlgfalvivilflayaqlgvllfGtqasnfsnlvksiltlfrlilgdfqytel.esgnrvLGpllllalvflvifillnlflaiinds 422
                  ++ fa+v++  +la+  ++++  G  +++f++   +i+ lfr + gdf+  e+ ++    +  ll+l++ f+ ifi+l lflai+ ++
   KOO23268.1 621 IFFFAIVFFNSLLAFSTMLYVQLGPVMEDFYDQGPAIVSLFRALFGDFDLDEVmNQSSGYMNALLFLVYLFVAIFIMLSLFLAILAEA 708
                  **************************************************9751677889*************************987 PP

>> Ion_trans  Ion transport protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.7   0.5     0.014   1.3e+02     122     160 ..     120     172 ..      72     200 .. 0.68
   2 !   41.3  17.5   1.1e-14   9.9e-11      34     244 ..     495     716 ..     462     717 .. 0.82

  Alignments for each domain:
  == domain 1  score: 1.7 bits;  conditional E-value: 0.014
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCC...............C CS
   Ion_trans 122 alirsvkdllnvlllllvvlfifaligvqlfkgklrek...............n 160
                  +++ v ++ln l l +++ ++f +++++l  g++r++               +
  KOO23268.1 120 RWTNNVFNVLNSLSLQACLYLVFVIVFQNLA-GTMRRReeyymtmhvmnkfvtT 172
                 4778888888999999999999999887776.8888774444444443333330 PP

  == domain 2  score: 41.3 bits;  conditional E-value: 1.1e-14
                 HHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHCHSHHHHHHHHHHHHHHHHH.......HHHH........................HHHHHHHHHHHH CS
   Ion_trans  34 ileilelvftaiftlemllkilalgllikkrYlrdpwnilDflvvlpsllsl.......vlse........................esllllsvlrlf 101
                 +   + +v +a+f++  l++++ +g+     Y++++w ++D+   +++l+++       +  +                        e  ++ + l l 
  KOO23268.1 495 LYAQISMVMVAFFAMLELIELIRQGP---IDYVQNFWHLMDWGNYIIFLQVYfqvvqvrQ--TienpdcssflcanigyfddwkamgEYRICKQYLALC 588
                 4556789999****************...*********************9987766550..1555666667777788888888998677777777777 PP

                 GGGGGGHHH....CHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH.HHHHTTSCCCCCCSCCSTSSSTTTSSSSSSHHHHHHHHHHHHTTS.S CS
   Ion_trans 102 rvlrllkli....srleglrtlvtalirsvkdllnvlllllvvlfifalig.vqlfkgklreknecaktwenpnngntnFdnfftallwlfrlmtte.g 194
                  +l l+k++    + ++++  + + l +++ d++ ++++++  l++f+ +  vql                        F + + a+++lfr ++++ +
  KOO23268.1 589 VCLQLFKITkftsQLVPKMGLMSNVLRHAAIDIFFFAIVFFNSLLAFSTMLyVQLG------------------PVMEDFYDQGPAIVSLFRALFGDfD 669
                 888888888333344556777999**************************944444..................345578899**************** PP

                 HHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
   Ion_trans 195 wgdilyatldekskvaliyfvifiilgsflllNlliaviadnfqeltere 244
                 + +++++  +++   + ++f++++++++f++l+l++a+ a++ + ++ere
  KOO23268.1 670 LDEVMNQSSGYM---NALLFLVYLFVAIFIMLSLFLAILAEAQAAVRERE 716
                 ************...*************************9988888875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (953 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       716  (0.0399353); expected 358.6 (0.02)
Passed bias filter:                      492  (0.0274416); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.68u 0.27s 00:00:00.95 Elapsed: 00:00:00.40
# Mc/sec: 7190.79
//
Query:       KOO23269.1  [L=212]
Description: hypothetical protein Ctob_000843 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.8e-12   47.8   0.0    2.2e-12   47.5   0.0    1.1  1  SMI1_KNR4  SMI1 / KNR4 family (SUKH-1)
  ------ inclusion threshold ------
      0.026   15.0   0.0      0.078   13.4   0.0    1.8  1  SUKH_6     SMI1-KNR4 cell-wall


Domain annotation for each model (and alignments):
>> SMI1_KNR4  SMI1 / KNR4 family (SUKH-1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.5   0.0   2.4e-16   2.2e-12       2     127 ..      32     167 ..      31     173 .. 0.80

  Alignments for each domain:
  == domain 1  score: 47.5 bits;  conditional E-value: 2.4e-16
                 --HHHHHHHHHHHTS---HHHHHHHHHHTSEEEEETT....SEEETTEEEEEE-THHHHS............HHHCCCHHH.HHHCHHCCSSTTEEEEE CS
   SMI1_KNR4   2 ateedlqefekdlgikLPndyreflkltnGgelfges....nglifglkllsldeieeereesrsss.....eeladdkek.kkiprqralphgwipfa 90 
                 ++e++++++e++lg +LP  yr++l l++G+ +f +      ++ +   l +l  + e+++e +s            + ++ +  +r +a+    ip+a
  KOO23269.1  32 LSEDAIAAAEAKLGASLPAGYRASLALHDGQASFAGGggglPWMPGCGALAPLAKVLEQWAEVQSLVadfplP----EATEdEDRIRSGAYRARRIPIA 126
                 689***************************8888888788888888899999999999998888888654431....333334466999999999**** PP

                 E..ETTCEEEECEEEE..TTTTEEEECCHHHGG-EEEESSH CS
   SMI1_KNR4  91 t..dgggnyicidlsp..qgeegqvilfrdddekfqiadsf 127
                    +++g+  ++dl+p   g+ gq i    +     + +sf
  KOO23269.1 127 GtpYWDGDTTYLDLDPgpAGTSGQLITLVTECDFVTLGPSF 167
                 *787*************9******99774443344455555 PP

>> SUKH_6  SMI1-KNR4 cell-wall
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.0   8.7e-06     0.078       1      28 [.      34      61 ..      34     149 .. 0.81

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 8.7e-06
      SUKH_6  1 eeeiaeaEkelgvkLPedYkeflkeyng 28
                e+ ia+aE +lg +LP  Y++ l  + g
  KOO23269.1 34 EDAIAAAEAKLGASLPAGYRASLALHDG 61
                678********************99965 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (212 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       376  (0.0209716); expected 358.6 (0.02)
Passed bias filter:                      300  (0.0167327); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.41u 0.26s 00:00:00.67 Elapsed: 00:00:00.42
# Mc/sec: 1529.24
//
Query:       KOO23270.1  [L=340]
Description: hypothetical protein Ctob_000849 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (340 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       338  (0.0188521); expected 358.6 (0.02)
Passed bias filter:                      198  (0.0110436); expected 358.6 (0.02)
Passed Vit filter:                        10  (0.000557756); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.44u 0.23s 00:00:00.67 Elapsed: 00:00:00.40
# Mc/sec: 2535.83
//
Query:       KOO23271.1  [L=618]
Description: hypothetical protein Ctob_000839, partial [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.2e-07   31.2   0.0    2.3e-07   30.3   0.0    1.4  1  ART             NAD:arginine ADP-ribosyltransferase
    0.00051   19.4   0.0      0.001   18.5   0.0    1.4  1  ADPrib_exo_Tox  ADP-ribosyltransferase exoenzyme
  ------ inclusion threshold ------
      0.087   12.4   0.3       0.14   11.6   0.3    1.2  1  Tachylectin     Tachylectin


Domain annotation for each model (and alignments):
>> ART  NAD:arginine ADP-ribosyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.3   0.0   3.9e-11   2.3e-07      97     208 ..     391     517 ..     332     525 .. 0.81

  Alignments for each domain:
  == domain 1  score: 30.3 bits;  conditional E-value: 3.9e-11
         ART  97 lsnfdfkalhfyLtraLqlLrkdsqrcsqvyRgvkgl....rfsrakkgksvRfg...qFtssslkkkvae.......efgqdtllsiktcl...gvpI 178
                    +++ +   ++ +a+ +L+k    + +vyRg  g+     f ra++   vR g   +F+s+ +++kva          g+++++++   +   g++I
  KOO23271.1 391 CLGNKYTTTLHAINSAIVKLSK-LTAATKVYRGLSGMglpdAFWRANEF-GVRGGieaAFMSTTTDRKVAMdyasssgAAGSGIVFEVLQGMinrGADI 487
                 557889999999**********.9999********76112234444433.699776668***********99999999999*****998764455**** PP

         ART 179 kefskfpsedevLIppfevFkvtnlskeeg 208
                   +s++p+e+evL  p++  +v  ++ e++
  KOO23271.1 488 TFLSMYPHEQEVLFAPLTGLEVHSMRVEDA 517
                 ********************9999887776 PP

>> ADPrib_exo_Tox  ADP-ribosyltransferase exoenzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.5   0.0   1.7e-07     0.001      56     174 ..     398     514 ..     358     532 .. 0.79

  Alignments for each domain:
  == domain 1  score: 18.5 bits;  conditional E-value: 1.7e-07
                     HHHHHHHHHCCT-.B-SS-EEEEEEE-GGGG-HHHHTT-HHHHHHHHHHHTT-EEEESS-EEEESSSS.......SCCCTTTSEEEEEEE-TTSB CS
  ADPrib_exo_Tox  56 kkiknldsaleks.ripeniivYRrvdeaelgleldskneekvsefeakvkgkvfkergyvSTslvkd......taasfggreilleltvpkgse 143
                      + + ++sa+ k  +++   +vYR+ +   l         + +    + +  +   e +++ST+  ++       +++ +g+ i +e+     + 
      KOO23271.1 398 TTLHAINSAIVKLsKLTAATKVYRGLSGMGL--------PDAFWR-ANEFGVRGGIEAAFMSTTTDRKvamdyaSSSGAAGSGIVFEVLQGMINR 483
                     4567899999999999999999999844444........344443.4478889999************888755445555556777766666689 PP

                     EEE-CCCSSSGCG-EEEE-TTEEEEEEEEEE CS
  ADPrib_exo_Tox 144 gayisplslypgeaEvLlprgltykinkitl 174
                     ga+i  ls yp e+EvL+   + +++++++ 
      KOO23271.1 484 GADITFLSMYPHEQEVLFAPLTGLEVHSMRV 514
                     *****************99888888877765 PP

>> Tachylectin  Tachylectin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.3   2.4e-05      0.14      71     119 ..      96     159 ..      78     172 .. 0.77

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 2.4e-05
                  SEEEEESSS......TT-.........SEEEE-TTS-EEEEETT.EEEEE---S.STTS-HHHH- CS
  Tachylectin  71 arvvgkgeW......grf.........kkivvdpkGvlYavtadGeLykgppPs.deetsWeava 119
                  + +++ g W      +++         +ki+vd++   Y+++a+G++ kgpp + +++++W + +
   KOO23271.1  96 EHQISPG-WdwgflnDKYdfvidvstgQKILVDKTTPKYKLDASGNIFKGPPITdTQTKEWTTAG 159
                  5677778.76677776668889999999*********************9775514556786543 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (618 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1066  (0.0594567); expected 358.6 (0.02)
Passed bias filter:                      652  (0.0363657); expected 358.6 (0.02)
Passed Vit filter:                        59  (0.00329076); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.66u 0.28s 00:00:00.94 Elapsed: 00:00:00.42
# Mc/sec: 4374.68
//
Query:       KOO23272.1  [L=477]
Description: hypothetical protein Ctob_004177, partial [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (477 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       417  (0.0232584); expected 358.6 (0.02)
Passed bias filter:                      362  (0.0201908); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.47u 0.24s 00:00:00.71 Elapsed: 00:00:00.38
# Mc/sec: 3744.50
//
Query:       KOO23273.1  [L=218]
Description: peptidyl-prolyl cis-trans isomerase fkbp4 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    4.4e-18   64.3   8.5    5.8e-09   35.4   0.1    3.9  3  TPR_1          Tetratricopeptide repeat
    4.4e-16   57.6   6.2    3.4e-08   33.0   0.1    3.7  3  TPR_2          Tetratricopeptide repeat
      2e-09   36.9   2.5     0.0021   17.7   0.1    3.6  3  TPR_11         TPR repeat
    2.6e-09   37.1   2.5    1.5e-05   25.3   0.1    3.8  4  TPR_6          Tetratricopeptide repeat
    3.5e-09   37.0   2.0    1.9e-06   28.2   0.6    2.6  2  TPR_19         Tetratricopeptide repeat
    1.7e-08   34.0   7.2    4.8e-06   26.4   0.0    3.8  3  TPR_8          Tetratricopeptide repeat
    2.5e-08   33.7   1.0    4.8e-06   26.6   0.2    3.4  3  TPR_17         Tetratricopeptide repeat
    2.5e-08   34.4   1.8    0.00032   21.3   0.1    2.8  3  TPR_16         Tetratricopeptide repeat
    5.8e-08   32.9   1.0    1.3e-05   25.4   0.1    2.4  2  TPR_12         Tetratricopeptide repeat
    1.9e-07   31.1   0.6    8.5e-07   29.0   0.2    2.0  2  TPR_9          Tetratricopeptide repeat
    3.4e-05   24.3   2.0     0.0028   18.3   0.2    3.3  3  TPR_14         Tetratricopeptide repeat
     0.0014   18.7   0.4        1.1    9.4   0.0    2.5  2  Fis1_TPR_C     Fis1 C-terminal tetratricopeptide repeat
     0.0023   17.9   2.5       0.97    9.6   0.1    3.5  3  TPR_7          Tetratricopeptide repeat
  ------ inclusion threshold ------
       0.02   15.0   0.1      0.041   14.0   0.1    1.6  1  TolA_bind_tri  TolA binding protein trimerisation
      0.044   13.0   0.0      0.071   12.3   0.0    1.4  1  TPR_15         Tetratricopeptide repeat
      0.055   13.5   0.0       0.15   12.1   0.0    1.6  2  DUF982         Protein of unknown function (DUF982)
       0.15   12.0   1.4       0.85    9.6   0.3    2.6  2  TPR_10         Tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> TPR_1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.6   0.2   2.1e-05     0.022       4      26 ..      16      38 ..      13      39 .. 0.89
   2 !   16.8   0.9     4e-06    0.0042       4      34 .]      81     112 ..      79     112 .. 0.97
   3 !   35.4   0.1   5.5e-12   5.8e-09       1      33 [.     113     145 ..     113     146 .. 0.96

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 2.1e-05
                HHHHHHHHHHTT-HHHHHHHHHH CS
       TPR_1  4 lynlGnayfklgkydeAleyyek 26
                l+  Gn+ fk g+y  A+++y +
  KOO23273.1 16 LKEQGNLAFKEGDYPAAIAAYHQ 38
                6778*****************86 PP

  == domain 2  score: 16.8 bits;  conditional E-value: 4e-06
                 HHHHHHHHHHTT.-HHHHHHHHHHHHHHSTTH CS
       TPR_1   4 lynlGnayfklg.kydeAleyyekALelnPnn 34 
                 ++nl+++++k g ky +A + + kAL ++P+n
  KOO23273.1  81 YCNLAMCHMKHGpKYLKARDNCTKALAIDPDN 112
                 9*****************************98 PP

  == domain 3  score: 35.4 bits;  conditional E-value: 5.5e-12
                 HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT CS
       TPR_1   1 akalynlGnayfklgkydeAleyyekALelnPn 33 
                 +kal+++G +y +l+++deA +++e++L+l+P+
  KOO23273.1 113 VKALFRRGKCYAQLNELDEAKADFERVLQLQPE 145
                 58******************************7 PP

>> TPR_2  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.1   0.3   0.00016      0.16       5      26 ..      17      38 ..      13      43 .. 0.89
   2 !   13.8   0.1   4.4e-05     0.046       4      34 .]      81     112 ..      81     112 .. 0.92
   3 !   33.0   0.1   3.2e-11   3.4e-08       2      33 ..     114     145 ..     113     146 .. 0.96

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 0.00016
       TPR_2  5 ynlGlayyklgdyeeAleafek 26
                 ++G++++k gdy  A++a+ +
  KOO23273.1 17 KEQGNLAFKEGDYPAAIAAYHQ 38
                678*****************98 PP

  == domain 2  score: 13.8 bits;  conditional E-value: 4.4e-05
       TPR_2   4 lynlGlayyklg.dyeeAleafekAleldPnn 34 
                 ++nl+++++k g +y +A++ + kAl++dP+n
  KOO23273.1  81 YCNLAMCHMKHGpKYLKARDNCTKALAIDPDN 112
                 689999999999788***************98 PP

  == domain 3  score: 33.0 bits;  conditional E-value: 3.2e-11
       TPR_2   2 ealynlGlayyklgdyeeAleafekAleldPn 33 
                 +al+++G++y++l++++eA+++fe++l+l P+
  KOO23273.1 114 KALFRRGKCYAQLNELDEAKADFERVLQLQPE 145
                 79*****************************7 PP

>> TPR_11  TPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.0   0.1   0.00024      0.25       1      19 [.      20      38 ..      20      38 .. 0.92
   2 !   17.7   0.1   1.9e-06    0.0021      19      41 ..     104     126 ..      94     127 .. 0.88
   3 !   11.7   0.1   0.00015      0.16       1      29 [.     120     148 ..     120     153 .. 0.90

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00024
      TPR_11  1 GdayyeqGkyeeAieaYkk 19
                G++ ++ G+y++Ai+aY +
  KOO23273.1 20 GNLAFKEGDYPAAIAAYHQ 38
                8999*************65 PP

  == domain 2  score: 17.7 bits;  conditional E-value: 1.9e-06
      TPR_11  19 kAlkldPdnaeayynLGlayykq 41 
                 kAl++dPdn+ a++ +G+ y+++
  KOO23273.1 104 KALAIDPDNVKALFRRGKCYAQL 126
                 9*******************987 PP

  == domain 3  score: 11.7 bits;  conditional E-value: 0.00015
      TPR_11   1 GdayyeqGkyeeAieaYkkAlkldPdnae 29 
                 G+ y ++++++eA +++++ l+l P++ +
  KOO23273.1 120 GKCYAQLNELDEAKADFERVLQLQPESSD 148
                 6779*********************9866 PP

>> TPR_6  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.4   0.1     0.032        34       6      25 ..      19      38 ..      18      40 .. 0.84
   2 ?    4.2   0.0     0.074        78       5      32 ..      83     111 ..      83     112 .. 0.86
   3 !   25.3   0.1   1.5e-08   1.5e-05       2      33 .]     115     146 ..     114     146 .. 0.97
   4 ?   -1.9   0.0       6.5   6.8e+03      21      29 ..     158     166 ..     149     167 .. 0.79

  Alignments for each domain:
  == domain 1  score: 5.4 bits;  conditional E-value: 0.032
                HHHHHHHHHHHHHHHHHHHH CS
       TPR_6  6 lalsyrklgdtdkAlealer 25
                ++ + +k gd+ +A++a+ +
  KOO23273.1 19 QGNLAFKEGDYPAAIAAYHQ 38
                577788888*********87 PP

  == domain 2  score: 4.2 bits;  conditional E-value: 0.074
                 HHHHHHHH.HHHHHHHHHHHHHHHHH-TT CS
       TPR_6   5 klalsyrk.lgdtdkAlealerlikeYPd 32 
                 +la+++ k + ++ kA++   + +   Pd
  KOO23273.1  83 NLAMCHMKhGPKYLKARDNCTKALAIDPD 111
                 69******666**9***999999888887 PP

  == domain 3  score: 25.3 bits;  conditional E-value: 1.5e-08
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHH-TT- CS
       TPR_6   2 AlyklalsyrklgdtdkAlealerlikeYPdS 33 
                 Al++++++y +l++ d+A++ +er+++  P+S
  KOO23273.1 115 ALFRRGKCYAQLNELDEAKADFERVLQLQPES 146
                 9**********99*****************98 PP

  == domain 4  score: -1.9 bits;  conditional E-value: 6.5
                 HHHHHHHHH CS
       TPR_6  21 ealerlike 29 
                  a+e+l+k+
  KOO23273.1 158 GAFEKLRKR 166
                 489999886 PP

>> TPR_19  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.5   0.0    0.0055       5.8       1      20 [.      23      42 ..      23      49 .. 0.84
   2 !   28.2   0.6   1.8e-09   1.9e-06       7      62 ..      95     150 ..      88     156 .. 0.91

  Alignments for each domain:
  == domain 1  score: 7.5 bits;  conditional E-value: 0.0055
      TPR_19  1 llaegdyaeAlalleqalqe 20
                +++egdy +A+a++ q++ +
  KOO23273.1 23 AFKEGDYPAAIAAYHQIYMY 42
                589*************9865 PP

  == domain 2  score: 28.2 bits;  conditional E-value: 1.8e-09
      TPR_19   7 yaeAlalleqalqedpknaearllLAeallalgqldeAealLdalpeedpddarya 62 
                 y  A +  ++al+ dp+n  a+ +  +++ +l++ldeA+a  +++++ +p +++++
  KOO23273.1  95 YLKARDNCTKALAIDPDNVKALFRRGKCYAQLNELDEAKADFERVLQLQPESSDAK 150
                 66799999********************************9999999999987765 PP

>> TPR_8  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.7   0.1     0.083        87       8      24 ..      20      36 ..      18      40 .. 0.91
   2 ?    6.3   0.1     0.012        13       4      34 .]      81     112 ..      81     112 .. 0.82
   3 !   26.4   0.0   4.5e-09   4.8e-06       2      33 ..     114     145 ..     113     146 .. 0.95

  Alignments for each domain:
  == domain 1  score: 3.7 bits;  conditional E-value: 0.083
                HHHHHHTT-HHHHHHHH CS
       TPR_8  8 gsiylklgdyeeAkeyy 24
                g++ +k gdy +A+++y
  KOO23273.1 20 GNLAFKEGDYPAAIAAY 36
                8999***********99 PP

  == domain 2  score: 6.3 bits;  conditional E-value: 0.012
                 HHHHHHHHHHTT.-HHHHHHHHHHHHHHHHH. CS
       TPR_8   4 yynlgsiylklg.dyeeAkeyyekaleldpdn 34 
                 y+nl+++++k g +y +A   + kal +dpdn
  KOO23273.1  81 YCNLAMCHMKHGpKYLKARDNCTKALAIDPDN 112
                 77888888555558999*************97 PP

  == domain 3  score: 26.4 bits;  conditional E-value: 4.5e-09
                 CHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH CS
       TPR_8   2 eayynlgsiylklgdyeeAkeyyekaleldpd 33 
                 +a+++ g++y +l++++eAk+ +e++l+l+p+
  KOO23273.1 114 KALFRRGKCYAQLNELDEAKADFERVLQLQPE 145
                 799***************************97 PP

>> TPR_17  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.1   0.0      0.29   3.1e+02      15      33 ..      80      99 ..      79     100 .. 0.80
   2 !   26.6   0.2   4.5e-09   4.8e-06       2      33 ..     102     133 ..     101     134 .. 0.96
   3 ?    1.4   0.0       0.5   5.2e+02       2      15 ..     136     149 ..     135     153 .. 0.90

  Alignments for each domain:
  == domain 1  score: 2.1 bits;  conditional E-value: 0.29
      TPR_17 15 aynnLAelllknG.dlmtAr 33
                +y+nLA ++ k G ++ +Ar
  KOO23273.1 80 HYCNLAMCHMKHGpKYLKAR 99
                69******999887666665 PP

  == domain 2  score: 26.6 bits;  conditional E-value: 4.5e-09
      TPR_17   2 ylkaleldPnnadaynnLAelllknGdlmtAr 33 
                 ++kal++dP+n++a++ ++++++++++l++A+
  KOO23273.1 102 CTKALAIDPDNVKALFRRGKCYAQLNELDEAK 133
                 78****************************98 PP

  == domain 3  score: 1.4 bits;  conditional E-value: 0.5
      TPR_17   2 ylkaleldPnnada 15 
                 ++++l+l P ++da
  KOO23273.1 136 FERVLQLQPESSDA 149
                 89*********997 PP

>> TPR_16  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.5   0.1   0.00035      0.37       3      22 ..      19      38 ..      17      40 .. 0.83
   2 !   21.3   0.1   3.1e-07   0.00032      16      67 ..      98     146 ..      94     147 .. 0.86
   3 !    8.0   0.1    0.0044       4.6      11      37 ..     127     150 ..     126     153 .. 0.78

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.00035
      TPR_16  3 laraalragdyddAaaalea 22
                ++++a++ gdy++A+aa+++
  KOO23273.1 19 QGNLAFKEGDYPAAIAAYHQ 38
                78999999999999999987 PP

  == domain 2  score: 21.3 bits;  conditional E-value: 3.1e-07
      TPR_16  16 AaaaleaalkrdpssPdaaeAllllgdaalrqgrlaeAaalyraalraapda 67 
                 A+   + al+ d   Pd++ Al+ +g +++++++l+eA a +++ l+  p +
  KOO23273.1  98 ARDNCTKALAID---PDNVKALFRRGKCYAQLNELDEAKADFERVLQLQPES 146
                 666667799999...************************9999999888865 PP

  == domain 3  score: 8.0 bits;  conditional E-value: 0.0044
      TPR_16  11 gdyddAaaaleaalkrdpssPdaaeAl 37 
                 ++ d+A a +e++l ++p+s+d   A 
  KOO23273.1 127 NELDEAKADFERVLQLQPESSD---AK 150
                 5789*************55555...54 PP

>> TPR_12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.9   0.1     0.015        15       8      29 ..      18      39 ..       8      41 .. 0.80
   2 !   25.4   0.1   1.2e-08   1.3e-05       5      75 ..      80     143 ..      76     145 .. 0.92

  Alignments for each domain:
  == domain 1  score: 5.9 bits;  conditional E-value: 0.015
      TPR_12  8 nlaavlrrlgrydeAlelleka 29
                + +++ ++ g+y  A++ +++ 
  KOO23273.1 18 EQGNLAFKEGDYPAAIAAYHQI 39
                5788999999999999999886 PP

  == domain 2  score: 25.4 bits;  conditional E-value: 1.2e-08
      TPR_12   5 alnnlaavlrrlgr.ydeAlellekaleiarrllGpdhpltattlrnLgrlyralgryeeAlelleealaia 75 
                  + nla+++++ g  y +A++++ kal+i      pd+   + +l+  g +y +l++++eA + +e++l++ 
  KOO23273.1  80 HYCNLAMCHMKHGPkYLKARDNCTKALAID-----PDN---VKALFRRGKCYAQLNELDEAKADFERVLQLQ 143
                 5679*****999999***************.....*98...88**************************986 PP

>> TPR_9  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.3   0.0       1.2   1.2e+03      36      52 ..      20      36 ..      14      41 .. 0.61
   2 !   29.0   0.2   8.1e-10   8.5e-07      13      67 ..      97     151 ..      93     157 .. 0.89

  Alignments for each domain:
  == domain 1  score: -0.3 bits;  conditional E-value: 1.2
       TPR_9 36 GlllaqlGclsaAladL 52
                G l ++ G++ aA+a+ 
  KOO23273.1 20 GNLAFKEGDYPAAIAAY 36
                55555556666665543 PP

  == domain 2  score: 29.0 bits;  conditional E-value: 8.1e-10
       TPR_9  13 ralavverllllaPddpeerrdRGlllaqlGclsaAladLeaylalapdapdaea 67 
                 +a   +   l+++Pd +  ++ RG ++aql+ l +A ad+e+ l+l+p+  da +
  KOO23273.1  97 KARDNCTKALAIDPDNVKALFRRGKCYAQLNELDEAKADFERVLQLQPESSDAKR 151
                 5666677789**************************************9999875 PP

>> TPR_14  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.4   0.0      0.72   7.6e+02       6      26 ..      18      38 ..      14      40 .. 0.82
   2 ?    6.4   0.0     0.018        19      19      43 ..      97     121 ..      88     122 .. 0.86
   3 !   18.3   0.2   2.6e-06    0.0028       2      41 ..     114     153 ..     113     156 .. 0.94

  Alignments for each domain:
  == domain 1  score: 1.4 bits;  conditional E-value: 0.72
      TPR_14  6 alaeallalGdpdeAiallrr 26
                + + + +  Gd+ +Aia++++
  KOO23273.1 18 EQGNLAFKEGDYPAAIAAYHQ 38
                567788899********9987 PP

  == domain 2  score: 6.4 bits;  conditional E-value: 0.018
      TPR_14  19 eAiallrralalaPddaeawlllaq 43 
                 +A++ + +ala +Pd+  a+++ ++
  KOO23273.1  97 KARDNCTKALAIDPDNVKALFRRGK 121
                 67777889************99887 PP

  == domain 3  score: 18.3 bits;  conditional E-value: 2.6e-06
      TPR_14   2 eallalaeallalGdpdeAiallrralalaPddaeawlll 41 
                 +al ++++ +++l ++deA a ++r+l+l+P++ +a ++l
  KOO23273.1 114 KALFRRGKCYAQLNELDEAKADFERVLQLQPESSDAKREL 153
                 68999****************************9999876 PP

>> Fis1_TPR_C  Fis1 C-terminal tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.4   0.0     0.001       1.1       7      37 ..      84     115 ..      80     117 .. 0.84
   2 !    7.3   0.2    0.0047         5      11      38 ..     123     150 ..     115     167 .. 0.87

  Alignments for each domain:
  == domain 1  score: 9.4 bits;  conditional E-value: 0.001
                 HHHHHHHHT.-HHHHHHHHHHHHHHTTS-HHH CS
  Fis1_TPR_C   7 lAlGhyklg.eYseArryvdalLeiEPenrQa 37 
                 lA+ h+k g +Y +Ar  +   L+i+P+n  a
  KOO23273.1  84 LAMCHMKHGpKYLKARDNCTKALAIDPDNVKA 115
                 67777777658******************766 PP

  == domain 2  score: 7.3 bits;  conditional E-value: 0.0047
                 HHHHT-HHHHHHHHHHHHHHTTS-HHHH CS
  Fis1_TPR_C  11 hyklgeYseArryvdalLeiEPenrQaq 38 
                 ++ l e +eA+   +++L+++Pe + a+
  KOO23273.1 123 YAQLNELDEAKADFERVLQLQPESSDAK 150
                 68899******************99886 PP

>> TPR_7  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.7   0.1     0.017        18       6      24 ..      20      38 ..      16      42 .. 0.89
   2 ?   -0.0   0.0       1.1   1.2e+03       2      27 ..      81     107 ..      81     113 .. 0.52
   3 !    9.6   0.1   0.00092      0.97       1      31 [.     115     145 ..     115     150 .. 0.84

  Alignments for each domain:
  == domain 1  score: 5.7 bits;  conditional E-value: 0.017
       TPR_7  6 arlysrlGdyeeAielyeq 24
                ++l +++Gdy  Ai  y q
  KOO23273.1 20 GNLAFKEGDYPAAIAAYHQ 38
                88999**********9988 PP

  == domain 2  score: -0.0 bits;  conditional E-value: 1.1
       TPR_7   2 LlnLarlysr.lGdyeeAielyeqsLa 27 
                 ++nLa ++ +   +y +A + ++++La
  KOO23273.1  81 YCNLAMCHMKhGPKYLKARDNCTKALA 107
                 567777766533334455555566444 PP

  == domain 3  score: 9.6 bits;  conditional E-value: 0.00092
       TPR_7   1 aLlnLarlysrlGdyeeAielyeqsLaltkd 31 
                 aL++ + +y +l++ +eA   +e++L+l  +
  KOO23273.1 115 ALFRRGKCYAQLNELDEAKADFERVLQLQPE 145
                 78999*******************8877554 PP

>> TolA_bind_tri  TolA binding protein trimerisation
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.1   3.9e-05     0.041      18      45 ..     137     164 ..     123     184 .. 0.82

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 3.9e-05
  TolA_bind_tri  18 qlllelqqqlealqqelreLRGqiEelq 45 
                    +  l+lq + ++ ++elr+LRG  E+l+
     KOO23273.1 137 ERVLQLQPESSDAKRELRSLRGAFEKLR 164
                    6789*********************987 PP

>> TPR_15  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   6.8e-05     0.071     147     186 ..     114     153 ..      74     154 .. 0.91

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 6.8e-05
      TPR_15 147 afllaraelyrqegqtdaAlrdyreAlalapdsselraal 186
                   l++r++ y q ++ d+A  d++++l+l+p+ss+++ +l
  KOO23273.1 114 KALFRRGKCYAQLNELDEAKADFERVLQLQPESSDAKREL 153
                 56999******************************99876 PP

>> DUF982  Protein of unknown function (DUF982)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   0.00014      0.15       9      50 ..      67     107 ..      63     118 .. 0.85
   2 ?   -2.8   0.0       6.6   6.9e+03      11      26 ..     148     163 ..     141     166 .. 0.68

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 0.00014
                 T.S-EEEEEEHHHHHHHHHH--S---SHHHHHHHHHHHHHHT CS
      DUF982   9 kggevreissveeAldfLleeWPvsrgpayeaAlkaCrdAld 50 
                 +++ v+ i+ ++ A+++ l  +  ++gp+y +A+  C++Al+
  KOO23273.1  67 QEEMVQ-IRELKLAHYCNLAMCHMKHGPKYLKARDNCTKALA 107
                 544455.999*******99*********************97 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 6.6
                 S-EEEEEEHHHHHHHH CS
      DUF982  11 gevreissveeAldfL 26 
                 +  re +s++ A++ L
  KOO23273.1 148 DAKRELRSLRGAFEKL 163
                 5556778888888777 PP

>> TPR_10  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.5   0.0       1.2   1.3e+03      15      34 ..      19      38 ..      16      40 .. 0.59
   2 ?    9.6   0.3   0.00081      0.85      12      31 ..     123     142 ..     122     143 .. 0.94

  Alignments for each domain:
  == domain 1  score: -0.5 bits;  conditional E-value: 1.2
      TPR_10 15 rgrydeAealleealairrr 34
                +g+++  e ++  a+a++ +
  KOO23273.1 19 QGNLAFKEGDYPAAIAAYHQ 38
                55555556666677777766 PP

  == domain 2  score: 9.6 bits;  conditional E-value: 0.00081
      TPR_10  12 lrqrgrydeAealleealai 31 
                 + q++++deA a++e++l++
  KOO23273.1 123 YAQLNELDEAKADFERVLQL 142
                 89****************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (218 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       634  (0.0353617); expected 358.6 (0.02)
Passed bias filter:                      471  (0.0262703); expected 358.6 (0.02)
Passed Vit filter:                        59  (0.00329076); expected 17.9 (0.001)
Passed Fwd filter:                        17  (0.000948185); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              17  [number of targets reported over threshold]
# CPU time: 0.41u 0.22s 00:00:00.63 Elapsed: 00:00:00.36
# Mc/sec: 1790.25
//
Query:       KOO23274.1  [L=460]
Description: fkbp-type peptidyl-prolyl cis-trans isomerase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.4e-20   73.4   0.0    3.6e-20   72.1   0.0    1.7  1  FKBP_C    FKBP-type peptidyl-prolyl cis-trans isomerase
    1.9e-06   28.7   0.0    4.3e-06   27.6   0.0    1.6  1  FKBP_N    Domain amino terminal to FKBP-type peptidyl-prolyl 
    0.00044   19.9   0.1    0.00082   19.1   0.1    1.5  1  SAP       SAP domain


Domain annotation for each model (and alignments):
>> FKBP_C  FKBP-type peptidyl-prolyl cis-trans isomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   72.1   0.0   6.1e-24   3.6e-20       8      94 .]      99     190 ..      93     190 .. 0.91

  Alignments for each domain:
  == domain 1  score: 72.1 bits;  conditional E-value: 6.1e-24
                 TCEEEEEEEEEE...TTSSEEEEHCCHTSEEEEETTSSSSCHHHHHHHTTSBTT-EEEEEEEGGGTTTTTTBCTTT....B.TTSEEEEEEEEE CS
      FKBP_C   8 gdtVtvhykgkl...edgkvfdssrsrakplefkvGsgqvikGfeealegmkvGekrtltippelaYgekglaggv....ippnatLvFeveLl 94 
                 ++ + vhy gkl   e+g +fdss++r+kp++f  G  +vi+G+  al+ m  G+k+ +++pp++aYg+ g   ++    ip++a L Fe+eL+
  KOO23274.1  99 STECDVHYRGKLipaEGGIEFDSSYKRSKPATFAPG--NVIQGWTIALQLMGQGDKWAIFVPPHMAYGDAGRRDENrgqyIPAGAVLCFEIELV 190
                 56789*******99668******************9..8******************************88866668889************96 PP

>> FKBP_N  Domain amino terminal to FKBP-type peptidyl-prolyl isomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.6   0.0   7.2e-10   4.3e-06      72      97 .]      60      85 ..      23      85 .. 0.91

  Alignments for each domain:
  == domain 1  score: 27.6 bits;  conditional E-value: 7.2e-10
      FKBP_N 72 egeaFlaenkkkeGVkttesGLqYkV 97
                +g+aFl+enk+++GV+ ++sGLqY+V
  KOO23274.1 60 AGSAFLEENKARPGVVCLPSGLQYRV 85
                799*********************98 PP

>> SAP  SAP domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.1   0.1   1.4e-07   0.00082       4      34 ..     411     441 ..     408     442 .. 0.93

  Alignments for each domain:
  == domain 1  score: 19.1 bits;  conditional E-value: 1.4e-07
                 --HHHHHHHHHHTT--TTS-HHHHHHHHHHH CS
         SAP   4 ltVaeLKeeLkkrGLptsGkKaeLieRLkey 34 
                 l+ + LK +L  ++Lp+ G+K eL +RL+++
  KOO23274.1 411 LRLPTLKHALNDLSLPSDGNKDELAARLINA 441
                 78999***********************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (460 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       356  (0.0198561); expected 358.6 (0.02)
Passed bias filter:                      271  (0.0151152); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.47u 0.21s 00:00:00.68 Elapsed: 00:00:00.37
# Mc/sec: 3712.04
//
Query:       KOO23275.1  [L=1334]
Description: hcr2 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.7e-33  114.1  20.4    1.7e-08   34.1   0.8    6.1  6  LRR_8           Leucine rich repeat
    2.6e-25   88.0  18.4      9e-06   26.0   1.6    7.3  7  LRR_4           Leucine Rich repeats (2 copies)
    5.2e-10   38.5  20.2        1.1   10.1   0.1   11.0 10  LRR_1           Leucine Rich Repeat
    6.1e-05   22.4   0.7       0.85    8.8   0.0    3.7  4  PSII_BNR        Photosynthesis system II assembly factor YCF4
  ------ inclusion threshold ------
      0.077   12.5   4.0         16    5.0   0.0    3.1  3  LRR_9           Leucine-rich repeat
       0.14   10.9   0.0       0.24   10.1   0.0    1.3  1  Sortilin-Vps10  Sortilin, neurotensin receptor 3,


Domain annotation for each model (and alignments):
>> LRR_8  Leucine rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.8   0.0       3.9   1.2e+04      10      23 ..      51      64 ..      50      70 .. 0.79
   2 !   22.2   0.2   2.9e-08   8.8e-05       2      61 .]    1019    1077 ..    1018    1077 .. 0.94
   3 !   22.6   0.5   2.2e-08   6.6e-05      10      61 .]    1074    1125 ..    1073    1125 .. 0.92
   4 !   30.0   1.0   1.1e-10   3.3e-07      19      61 .]    1131    1173 ..    1129    1173 .. 0.96
   5 !   34.1   0.8   5.7e-12   1.7e-08       1      60 [.    1185    1244 ..    1185    1245 .. 0.97
   6 !   16.8   0.1   1.4e-06    0.0041       3      61 .]    1259    1317 ..    1253    1334 .] 0.81

  Alignments for each domain:
  == domain 1  score: -3.8 bits;  conditional E-value: 3.9
                TS--SEE-TTSSTT CS
       LRR_8 10 nNrltslddeaFkg 23
                ++rl+ ++ ++F++
  KOO23275.1 51 SSRLKRVPGSTFER 64
                78999******986 PP

  == domain 2  score: 22.2 bits;  conditional E-value: 2.9e-08
                  T-SEEE-TTS--SEE-TTSSTT-TT--EEE--SS---GGGGGGGTT--S-.EEE--SS-- CS
       LRR_8    2 nLtsLdLsnNrltslddeaFkglsnLkvLdLsnNllttlspgafsgLpsLrsLdLsgNrL 61  
                   L++L  s+N+lt+  ++   +l +L++L   nN++t++ p  +  L+sLrs+d s+N +
  KOO23275.1 1019 ALQYLWMSSNNLTGALPTEIGRLGHLRYLWFANNSITRI-PAELGELTSLRSIDGSNNSI 1077
                  699999*******999999999*****************.9************9999876 PP

  == domain 3  score: 22.6 bits;  conditional E-value: 2.2e-08
                  TS--SEE-TTSSTT-TT--EEE--SS---GGGGGGGTT--S-.EEE--SS-- CS
       LRR_8   10 nNrltslddeaFkglsnLkvLdLsnNllttlspgafsgLpsLrsLdLsgNrL 61  
                  nN++++  + +  +lsnLkvL+ ++N+l+   p+a+ ++ sL    L++N+L
  KOO23275.1 1074 NNSISDRLPYSLGRLSNLKVLKFGHNRLRATIPDALGSCVSLVIVELQHNQL 1125
                  67788888889999****************99******************98 PP

  == domain 4  score: 30.0 bits;  conditional E-value: 1.1e-10
                  TSSTT-TT--EEE--SS---GGGGGGGTT--S-.EEE--SS-- CS
       LRR_8   19 eaFkglsnLkvLdLsnNllttlspgafsgLpsLrsLdLsgNrL 61  
                   +F  l+ L++Ld+s+Nll++  p++++g+++L+ L L++N+L
  KOO23275.1 1131 ASFGELEELTSLDISHNLLERRVPDSIEGMRNLQTLLLNDNNL 1173
                  68999****************99******************98 PP

  == domain 5  score: 34.1 bits;  conditional E-value: 5.7e-12
                  TT-SEEE-TTS--SEE-TTSSTT-TT--EEE--SS---GGGGGGGTT--S-.EEE--SS- CS
       LRR_8    1 pnLtsLdLsnNrltslddeaFkglsnLkvLdLsnNllttlspgafsgLpsLrsLdLsgNr 60  
                  ++L+ L+L +Nrlt+  +++  ++ nL+ +dL nN+++   p  ++ L  L++L ++gNr
  KOO23275.1 1185 RRLQHLNLARNRLTVGLPDTLANCDNLELIDLQNNQIDGPLPAGIWRLQMLEYLLMTGNR 1244
                  68*************************************88******************8 PP

  == domain 6  score: 16.8 bits;  conditional E-value: 1.4e-06
                  -SEEE-TTS--SEE-TTSSTT-TT--EEE--SS---GGGGGGGTT--S-.EEE--SS-- CS
       LRR_8    3 LtsLdLsnNrltslddeaFkglsnLkvLdLsnNllttlspgafsgLpsLrsLdLsgNrL 61  
                   +++ L++N + +  + +  +   L+vL + +N+l+   p ++ +L+++  LdL  N L
  KOO23275.1 1259 IREIRLDRNLIDGTIPATIGDAVTLEVLRMDDNRLSGSIPSTMGQLRNVLNLDLHKNSL 1317
                  57788888888888888888888888888888888887788888888888888888865 PP

>> LRR_4  Leucine Rich repeats (2 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.4   0.0   0.00097       2.9      17      39 ..    1011    1034 ..    1005    1039 .. 0.79
   2 !   18.5   0.1   6.7e-07     0.002       2      36 ..    1043    1077 ..    1043    1083 .. 0.84
   3 !   13.7   0.0   2.1e-05     0.063       2      39 ..    1090    1129 ..    1089    1136 .. 0.91
   4 !   15.2   1.9   7.5e-06     0.022       2      35 ..    1138    1173 ..    1137    1181 .. 0.84
   5 !   26.0   1.6     3e-09     9e-06       2      37 ..    1186    1222 ..    1185    1227 .. 0.90
   6 ?    0.4   0.0      0.33   9.8e+02       2      36 ..    1234    1269 ..    1233    1274 .. 0.75
   7 !    9.7   0.2   0.00039       1.2       3      39 ..    1283    1321 ..    1281    1326 .. 0.86

  Alignments for each domain:
  == domain 1  score: 8.4 bits;  conditional E-value: 0.00097
                  S-.HHH-TT--EEE-.-S-----G CS
       LRR_4   17 pl.leklpnLkeLdLsgNnlitdl 39  
                  p+ l+ l  L++L++s+Nnl + l
  KOO23275.1 1011 PSeLGALSALQYLWMSSNNLTGAL 1034
                  5546669********999877665 PP

  == domain 2  score: 18.5 bits;  conditional E-value: 6.7e-07
                  S--EEE--SS---E-S-.HHH-TT--EEE-.-S--- CS
       LRR_4    2 nLevLdLsnNqltdipl.leklpnLkeLdLsgNnli 36  
                  +L++L+++nN +t ip  l+ l++L+++d  +Nn i
  KOO23275.1 1043 HLRYLWFANNSITRIPAeLGELTSLRSIDG-SNNSI 1077
                  69***************8888*******94.45444 PP

  == domain 3  score: 13.7 bits;  conditional E-value: 2.1e-05
                  S--EEE--SS---.E-S-.HHH-TT--EEE-.-S-----G CS
       LRR_4    2 nLevLdLsnNqlt.dipl.leklpnLkeLdLsgNnlitdl 39  
                  nL+vL +++N+l+ +ip  l+++ +L  + L +N li+++
  KOO23275.1 1090 NLKVLKFGHNRLRaTIPDaLGSCVSLVIVELQHNQLIGPV 1129
                  9*****************9999*********999888876 PP

  == domain 4  score: 15.2 bits;  conditional E-value: 7.5e-06
                  S--EEE--SS---.E-S-.HHH-TT--EEE-..-S-- CS
       LRR_4    2 nLevLdLsnNqlt.dipl.leklpnLkeLdL.sgNnl 35  
                   L++Ld+s+N l   +p  +e++ nL++L L ++Nnl
  KOO23275.1 1138 ELTSLDISHNLLErRVPDsIEGMRNLQTL-LlNDNNL 1173
                  69***********999998779*******.6488854 PP

  == domain 5  score: 26.0 bits;  conditional E-value: 3e-09
                  S--EEE--SS---.E-S-.HHH-TT--EEE-.-S---- CS
       LRR_4    2 nLevLdLsnNqlt.dipl.leklpnLkeLdLsgNnlit 37  
                  +L++L+L+ N+lt  +p  l++++nL+ +dL +Nn+i+
  KOO23275.1 1186 RLQHLNLARNRLTvGLPDtLANCDNLELIDL-QNNQID 1222
                  7************999999999*********.888983 PP

  == domain 6  score: 0.4 bits;  conditional E-value: 0.33
                  S--EEE--SS---.E-S-HH..H.-TT--EEE-.-S--- CS
       LRR_4    2 nLevLdLsnNqlt.diplle..k.lpnLkeLdLsgNnli 36  
                   Le+L   +N+++  +  +e  + l + +e+ L +N li
  KOO23275.1 1234 MLEYLLMTGNRVRgPL--PEgiGyLAQIREIRLDRN-LI 1269
                  6999999999**9333..445544999*****9777.66 PP

  == domain 7  score: 9.7 bits;  conditional E-value: 0.00039
                  --EEE--SS---.E-S-.HHH-TT--EEE-.-S-----G CS
       LRR_4    3 LevLdLsnNqlt.dipl.leklpnLkeLdLsgNnlitdl 39  
                  LevL   +N+l+ +ip+  ++l n   LdL+ N+l++++
  KOO23275.1 1283 LEVLRMDDNRLSgSIPStMGQLRNVLNLDLHKNSLVGTI 1321
                  9**************996445*********99*888777 PP

>> LRR_1  Leucine Rich Repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.7   0.0     0.095   2.8e+02       2      20 ..    1020    1038 ..    1019    1041 .. 0.83
   2 ?    2.5   0.1      0.11   3.3e+02       1      17 [.    1043    1059 ..    1043    1088 .. 0.80
   3 ?    1.6   0.0      0.22   6.6e+02       1      23 []    1090    1112 ..    1090    1112 .. 0.86
   4 ?    1.8   0.0      0.19   5.8e+02       2      23 .]    1115    1136 ..    1114    1136 .. 0.85
   5 !    8.9   0.0   0.00087       2.6       2      22 ..    1139    1159 ..    1138    1160 .. 0.93
   6 !    7.1   0.8    0.0035        11       1      21 [.    1162    1182 ..    1162    1184 .. 0.92
   7 !   10.1   0.1   0.00035       1.1       1      23 []    1186    1208 ..    1186    1208 .. 0.93
   8 ?    4.4   0.1     0.027        79       1      20 [.    1210    1229 ..    1210    1232 .. 0.84
   9 ?   -2.3   0.0       4.3   1.3e+04       2      20 ..    1259    1277 ..    1258    1278 .. 0.83
  10 ?    1.5   0.0      0.24     7e+02       2      19 ..    1283    1300 ..    1282    1323 .. 0.79

  Alignments for each domain:
  == domain 1  score: 2.7 bits;  conditional E-value: 0.095
       LRR_1    2 LrhLdLsnnpllglppnsf 20  
                  L++L +s+n+l+g +p  +
  KOO23275.1 1020 LQYLWMSSNNLTGALPTEI 1038
                  9**********98887655 PP

  == domain 2  score: 2.5 bits;  conditional E-value: 0.11
       LRR_1    1 nLrhLdLsnnpllglpp 17  
                  +Lr+L   nn+++++p+
  KOO23275.1 1043 HLRYLWFANNSITRIPA 1059
                  59999999999966654 PP

  == domain 3  score: 1.6 bits;  conditional E-value: 0.22
       LRR_1    1 nLrhLdLsnnpllglppnsfqnL 23  
                  nL++L  ++n+l   +p+++ ++
  KOO23275.1 1090 NLKVLKFGHNRLRATIPDALGSC 1112
                  8***********88888887765 PP

  == domain 4  score: 1.8 bits;  conditional E-value: 0.19
       LRR_1    2 LrhLdLsnnpllglppnsfqnL 23  
                  L    L +n+l+g  p+sf  L
  KOO23275.1 1115 LVIVELQHNQLIGPVPASFGEL 1136
                  666789************9865 PP

  == domain 5  score: 8.9 bits;  conditional E-value: 0.00087
       LRR_1    2 LrhLdLsnnpllglppnsfqn 22  
                  L++Ld+s+n l++  p+s+++
  KOO23275.1 1139 LTSLDISHNLLERRVPDSIEG 1159
                  89****************987 PP

  == domain 6  score: 7.1 bits;  conditional E-value: 0.0035
       LRR_1    1 nLrhLdLsnnpllglppnsfq 21  
                  nL++L L++n+l+g +p+s+ 
  KOO23275.1 1162 NLQTLLLNDNNLEGGLPSSIG 1182
                  8****************9986 PP

  == domain 7  score: 10.1 bits;  conditional E-value: 0.00035
       LRR_1    1 nLrhLdLsnnpllglppnsfqnL 23  
                  +L+hL+L +n+l+  +p+++ n+
  KOO23275.1 1186 RLQHLNLARNRLTVGLPDTLANC 1208
                  69***************999887 PP

  == domain 8  score: 4.4 bits;  conditional E-value: 0.027
       LRR_1    1 nLrhLdLsnnpllglppnsf 20  
                  nL+ +dL nn+++g +p+ +
  KOO23275.1 1210 NLELIDLQNNQIDGPLPAGI 1229
                  8***********88887765 PP

  == domain 9  score: -2.3 bits;  conditional E-value: 4.3
       LRR_1    2 LrhLdLsnnpllglppnsf 20  
                   r++ L +n ++g +p+++
  KOO23275.1 1259 IREIRLDRNLIDGTIPATI 1277
                  58999****9999888765 PP

  == domain 10  score: 1.5 bits;  conditional E-value: 0.24
       LRR_1    2 LrhLdLsnnpllglppns 19  
                  L++L + +n+l+g +p++
  KOO23275.1 1283 LEVLRMDDNRLSGSIPST 1300
                  899999999997766654 PP

>> PSII_BNR  Photosynthesis system II assembly factor YCF48
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.1   0.0   0.00048       1.4      30      52 ..     279     301 ..     272     324 .. 0.86
   2 ?    0.6   0.0      0.09   2.7e+02      28      60 ..     373     406 ..     363     422 .. 0.78
   3 ?   -1.8   0.0      0.48   1.4e+03     279     302 ..     433     456 ..     409     457 .. 0.80
   4 !    8.8   0.0   0.00029      0.85     245     285 ..     689     727 ..     614     737 .. 0.74

  Alignments for each domain:
  == domain 1  score: 8.1 bits;  conditional E-value: 0.00048
                 -EEEEETTTEEEEESSTTSS-EE CS
    PSII_BNR  30 hGflvGtkatlletlDGGktWee 52 
                  G  vG+k t++ t+DGG +W+ 
  KOO23275.1 279 VGLAVGAKGTIVRTMDGGYSWDC 301
                 5899*****************85 PP

  == domain 2  score: 0.6 bits;  conditional E-value: 0.09
                 SS-EEEEETTTEEEEESSTTSS.-EE-----S-- CS
    PSII_BNR  28 ekhGflvGtkatlletlDGGkt.Weersldleee 60 
                 + +G+ vG + ++l   D G t W++  ++ +++
  KOO23275.1 373 RMEGYAVGVNGVILRIDDAGVTgWDPSDIANNDQ 406
                 5679999999999999998865598888777766 PP

  == domain 3  score: -1.8 bits;  conditional E-value: 0.48
                 --EEEEEETTEEEEE-STTEEEEE CS
    PSII_BNR 279 lykikfleedkgfvlGerGvllry 302
                 + ++ f + + +f +G+rG + ry
  KOO23275.1 433 IRDVFFWNVHLSFFVGDRGFICRY 456
                 456778888999999999999988 PP

  == domain 4  score: 8.8 bits;  conditional E-value: 0.00029
                 S-EEEEESTT-EEEESSTTSS-EE-GGGTTSSS---EEEEE CS
    PSII_BNR 245 keiwvaGGsgtllvskDgGktwkkdksaekvpsnlykikfl 285
                 +++ v+G +g +l+++D G+tw++ + +  +p  l++++f 
  KOO23275.1 689 SQAVVVGDNGRVLYTNDAGNTWQELERV--TPEHLISVQFN 727
                 4566677777777777777777665544..35666666665 PP

>> LRR_9  Leucine-rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.0   0.0    0.0052        16      63     119 ..    1041    1095 ..    1022    1107 .. 0.78
   2 ?    4.6   0.6    0.0068        20      60     125 ..    1133    1197 ..    1117    1201 .. 0.82
   3 ?    1.3   0.1     0.071   2.1e+02      39     100 ..    1206    1269 ..    1198    1286 .. 0.78

  Alignments for each domain:
  == domain 1  score: 5.0 bits;  conditional E-value: 0.0052
       LRR_9   63 lkrlktlllnnnrivriaegleevlPnleelvltnnelqeladldPlaslkklells 119 
                  l  l+ l ++nn i+ri  +l+e l +l+++  +nn++ +      l  l++l++l 
  KOO23275.1 1041 LGHLRYLWFANNSITRIPAELGE-LTSLRSIDGSNNSISDRLP-YSLGRLSNLKVLK 1095
                  5678999**************98.5789999999999887554.3455566665554 PP

  == domain 2  score: 4.6 bits;  conditional E-value: 0.0068
       LRR_9   60 fPllkrlktlllnnnrivriaegleevlPnleelvltnnelqeladldPlaslkklellsllknpv 125 
                  f  l+ l +l ++ n + r  ++  e + nl++l+l++n+l+       + +l++l+ l l +n +
  KOO23275.1 1133 FGELEELTSLDISHNLLERRVPDSIEGMRNLQTLLLNDNNLEGGLP-SSIGTLRRLQHLNLARNRL 1197
                  6668889999999999999999999999999999999999986544.5778888888888887765 PP

  == domain 3  score: 1.3 bits;  conditional E-value: 0.071
       LRR_9   39 atldqfdtidlsdndirk.l.dgfPllkrlktlllnnnrivriaegleevlPnleelvltnnel 100 
                  a  d ++ idl++n+i   l  g+  l+ l+ ll+  nr++   ++   +l +++e+ l  n +
  KOO23275.1 1206 ANCDNLELIDLQNNQIDGpLpAGIWRLQMLEYLLMTGNRVRGPLPEGIGYLAQIREIRLDRNLI 1269
                  6678999999999999753336788899***********9865544445677777777776665 PP

>> Sortilin-Vps10  Sortilin, neurotensin receptor 3,
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.0   8.1e-05      0.24      36      79 ..     689     730 ..     684     871 .. 0.85

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 8.1e-05
                     --EEEEEES-EEEEESSTTSSEEEEE-SS-BS...S--EEESSE CS
  Sortilin-Vps10  36 kkaylltdskklyvttDrGktwkkfklpfkpslsaeplsfhakd 79 
                     ++a++++d++++++t+D+G+tw++ +  ++ +    +++f+a d
      KOO23275.1 689 SQAVVVGDNGRVLYTNDAGNTWQELERVTPEH--LISVQFNAFD 730
                     689999******************98766666..4566666654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1334 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       431  (0.0240393); expected 358.6 (0.02)
Passed bias filter:                      361  (0.020135); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.81u 0.29s 00:00:01.10 Elapsed: 00:00:00.46
# Mc/sec: 8775.70
//
Query:       KOO23276.1  [L=210]
Description: hypothetical protein Ctob_004181 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (210 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       290  (0.0161749); expected 358.6 (0.02)
Passed bias filter:                      212  (0.0118244); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.26s 00:00:00.64 Elapsed: 00:00:00.41
# Mc/sec: 1531.11
//
Query:       KOO23277.1  [L=436]
Description: glycolate oxidase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
   6.4e-120  400.3   0.0     8e-120  400.0   0.0    1.0  1  FMN_dh        FMN-dependent dehydrogenase
    0.00022   20.5   0.6    0.00037   19.8   0.6    1.2  1  Glu_synthase  Conserved region in glutamate synthase
    0.00024   20.2   0.4     0.0004   19.5   0.4    1.4  1  IMPDH         IMP dehydrogenase / GMP reductase domain
  ------ inclusion threshold ------
      0.011   15.1   2.1      0.011   15.1   2.1    1.5  2  NMO           Nitronate monooxygenase
      0.081   12.1   0.1       0.22   10.7   0.1    1.6  2  DHO_dh        Dihydroorotate dehydrogenase
       0.12   11.7   0.1        3.1    7.0   0.1    2.2  2  ThiG          Thiazole biosynthesis protein ThiG
       0.15   11.5   0.0       0.38   10.2   0.0    1.6  2  His_biosynth  Histidine biosynthesis protein
       0.26   11.6   4.5        6.8    7.1   0.9    2.4  2  ZF-HD_dimer   ZF-HD protein dimerisation region


Domain annotation for each model (and alignments):
>> FMN_dh  FMN-dependent dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  400.0   0.0  3.6e-123    8e-120       1     343 [.      45     401 ..      45     406 .. 0.98

  Alignments for each domain:
  == domain 1  score: 400.0 bits;  conditional E-value: 3.6e-123
                 HHCCS-HHHHHHHH--STTSHHHHHHHHGGGGEEE---SSSS-SS-.B--EEETTEEESSSEEE--BSTGGGTSTTHHHHHHHHHHHHTS-EEEETT-S CS
      FMN_dh   1 Arkrlpkkafayvaggagdevtlrenraaferirlrprvlrdvskv.dlsttllGqklslPvliaPvglaklahpdgelalaraaakagipfvlstvas 98 
                 Ar+r  k++f+y++g+a+de+++r  r+++ +++l+ +vl++ +++ dlst+++G ++ +P+++aP++ ++++h++ge a+a+aa+k g++f+ls++a+
  KOO23277.1  45 ARRRAHKMVFDYMDGCAEDEIAFRWSRESYANYELHYNVLAGKQQPiDLSTSIVGAPVGVPFFCAPCAGHRMFHHEGEEAVAKAASKYGALFCLSSLAT 143
                 899**************************************999877**************************************************** PP

                 S-HHHHHHHHTT-EEEEEE-CSSHHHHHHHHHHHHHCTESEEEEESSTSS---BHHHHHCT--BSTT-T.G.TTGGGSTSGSCCTTH............ CS
      FMN_dh  99 tsleevaaaaegplwfqlyvpkdrelteellkraeaagykalvltvDtpvlgkRerdlrngfslppklklrnllqelakpewaaeal............ 185
                 ts+e+vaa++ gp+ +qly++kdr+l++++++ra++agy+al+lt Dt++ g+Rerd rngfs+pp++++r+++++l  p+w+ + l            
  KOO23277.1 144 TSMEDVAAQHSGPKLMQLYLWKDRALVRDVVQRAREAGYHALALTADTAWFGNRERDPRNGFSVPPNYTPRQVWHALNAPSWSLDLLshppykyeivgd 242
                 ********9999*************************************************************************************98 PP

                 ...THHHHHHCCCHB-TC--HHHHHHHHHHHSSEEEEEEE-SHHHHHHHHHTTESEEEE--GGGTSSTT---HHHCHHHHHHHH..SS-EEEESS--SH CS
      FMN_dh 186 .kkasaaaefvgkqldpsltwddikwlreqtklplvvKGvltaedakraveaGvdgivvSNHGGRqldgapatidvLpeiveavggrievlvDgGirrG 283
                  + a++ ++++++ ++++ +wdd +wl  ++ +p ++KGv++++dakra ++G d++++SNHGGRql+++pa++dvLp+i+eavg ++++++DgG++rG
  KOO23277.1 243 eRPAEDIGSYFANLVSKDYSWDDAEWLLGEWGGPTLLKGVVRPDDAKRAFALGFDAVWISNHGGRQLETSPAPLDVLPAIREAVGPDAQLVLDGGVQRG 341
                 7677777799999************************************************************************************** PP

                 HHHHHHHHTT-SEEEESHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-SBHHHHHC CS
      FMN_dh 284 sDvlkAlalGAdavllGRpflyglaagGeeGvervleilraelertmallGvksvaeldr 343
                 +Dv+kAlalGA+av++G+++lyglaagG++G++++l+il++e+e +m llGv sv el+r
  KOO23277.1 342 TDVVKALALGANAVGVGKAYLYGLAAGGAAGATKALDILHRETELAMGLLGVGSVVELRR 401
                 *******************************************************99987 PP

>> Glu_synthase  Conserved region in glutamate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.8   0.6   1.6e-07   0.00037     275     308 ..     330     363 ..     321     369 .. 0.88

  Alignments for each domain:
  == domain 1  score: 19.8 bits;  conditional E-value: 1.6e-07
                   -EEEEESS--SHHHHHHHHHHT-SEEE-SHHHHH CS
  Glu_synthase 275 vsliadGglktgadvvkalalGAdavgigtaali 308
                    +l  dGg++ g+dvvkalalGA+avg+g+a l 
    KOO23277.1 330 AQLVLDGGVQRGTDVVKALALGANAVGVGKAYLY 363
                   68999************************99875 PP

>> IMPDH  IMP dehydrogenase / GMP reductase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.5   0.4   1.8e-07    0.0004     205     238 ..     327     360 ..     313     401 .. 0.87

  Alignments for each domain:
  == domain 1  score: 19.5 bits;  conditional E-value: 1.8e-07
                 TCT-EEEEES---SHHHHHHHHHTT-SEEEESCC CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       IMPDH 205 kagvpviaDGGikysgdivkAlaaGadavmlGsl 238
                   + +++ DGG++   d+vkAla+Ga+av +G+ 
  KOO23277.1 327 GPDAQLVLDGGVQRGTDVVKALALGANAVGVGKA 360
                 45688999**********************9975 PP

>> NMO  Nitronate monooxygenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.8   0.1       2.9   6.6e+03      27      46 ..     125     144 ..     122     152 .. 0.71
   2 ?   15.1   2.1     5e-06     0.011     148     228 ..     287     364 ..     277     387 .. 0.83

  Alignments for each domain:
  == domain 1  score: -3.8 bits;  conditional E-value: 2.9
         NMO  27 LaaavsnaGgLGvlasgylt 46 
                  a a s+ G+L  l+s   t
  KOO23277.1 125 VAKAASKYGALFCLSSLATT 144
                 67899999999999964444 PP

  == domain 2  score: 15.1 bits;  conditional E-value: 5e-06
         NMO 148 earkvearGaDalivqGpeaGGhqGtpevgdkglfaLvpqvldavd..iPviAaGGiidrrgvaaaLalGAsgvqigtrfLlt 228
                 +a+ + a+G Da+ +  ++ GG q + +++    + ++p +++av     ++  GG+ ++ +v  aLalGA++v +g ++L  
  KOO23277.1 287 DAKRAFALGFDAVWI--SNHGGRQLETSPA---PLDVLPAIREAVGpdAQLVLDGGVQRGTDVVKALALGANAVGVGKAYLYG 364
                 577777888888777..5788888866664...899*********877999****************************9965 PP

>> DHO_dh  Dihydroorotate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.1   9.9e-05      0.22     231     278 ..     316     363 ..     305     368 .. 0.89
   2 ?   -1.7   0.0      0.57   1.3e+03      17      51 ..     369     403 ..     364     408 .. 0.85

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 9.9e-05
                 HHHHHHHHHHTTT.S-EEEESS--SHHHHHHHHHHTECEEEESHHHHH CS
      DHO_dh 231 lkvirelykrlkkeipiIgvGGiesgeDalekieaGAslvqvytalvf 278
                 l v+ ++++ + ++ +++  GG++ g D++  +  GA +v v+ a+ +
  KOO23277.1 316 LDVLPAIREAVGPDAQLVLDGGVQRGTDVVKALALGANAVGVGKAYLY 363
                 67888899999999999**************************99987 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 0.57
                 E-TTSSTTSSSHHHHHCTTSSEEEEEEE-SS-B-- CS
      DHO_dh  17 lAaGfdkegeeilkllklgfgaieigsvtpkpqeG 51 
                  AaG  k  + + ++ +l +g + +gsv    + G
  KOO23277.1 369 GAAGATKALDILHRETELAMGLLGVGSVVELRRRG 403
                 5889999999999999999********99988887 PP

>> ThiG  Thiazole biosynthesis protein ThiG
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.2   0.0     0.042        95     183     203 ..     281     301 ..     276     305 .. 0.90
   2 ?    7.0   0.1    0.0014       3.1     171     203 ..     323     357 ..     312     364 .. 0.82

  Alignments for each domain:
  == domain 1  score: 2.2 bits;  conditional E-value: 0.042
                 ---SHHHHHHHHHTT-SEEEE CS
        ThiG 183 GigspsdaaqamelGadavll 203
                 G+ +p da  a+ lG+dav +
  KOO23277.1 281 GVVRPDDAKRAFALGFDAVWI 301
                 899****************77 PP

  == domain 2  score: 7.0 bits;  conditional E-value: 0.0014
                 HHH-..SS-BEEES---SHHHHHHHHHTT-SEEEE CS
        ThiG 171 ieea..kvPvivDAGigspsdaaqamelGadavll 203
                 +e +  +  +++D G+ + +d+++a+ lGa+av +
  KOO23277.1 323 REAVgpDAQLVLDGGVQRGTDVVKALALGANAVGV 357
                 5555556779**********************966 PP

>> His_biosynth  Histidine biosynthesis protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.0       1.4     3e+03      81     102 ..     281     302 ..     280     310 .. 0.80
   2 ?   10.2   0.0   0.00017      0.38      60     105 ..     314     361 ..     305     366 .. 0.76

  Alignments for each domain:
  == domain 1  score: -2.6 bits;  conditional E-value: 1.4
                   SSSSHHHHHHHHHCT-SEEEES CS
  His_biosynth  81 GIrsledveelleagadkviig 102
                   G+ + +d+++++ +g d v i+
    KOO23277.1 281 GVVRPDDAKRAFALGFDAVWIS 302
                   7778888999999998888775 PP

  == domain 2  score: 10.2 bits;  conditional E-value: 0.00017
                   HHHHHHHHHHHH-S..SEEEEESSSSSHHHHHHHHHCT-SEEEESHHH CS
  His_biosynth  60 anldlveeiaeevf..ipvqvGGGIrsledveelleagadkviigtaa 105
                   a ld++ +i+e+v   +++ ++GG+++  dv ++l +ga+ v +g a+
    KOO23277.1 314 APLDVLPAIREAVGpdAQLVLDGGVQRGTDVVKALALGANAVGVGKAY 361
                   556777777777765588888899999999999999999888888665 PP

>> ZF-HD_dimer  ZF-HD protein dimerisation region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.4   0.1     0.011        24       5      25 ..      42      62 ..      39      66 .. 0.94
   2 ?    7.1   0.9     0.003       6.8      39      52 ..     107     120 ..     104     123 .. 0.86

  Alignments for each domain:
  == domain 1  score: 5.4 bits;  conditional E-value: 0.011
  ZF-HD_dimer  5 keClrNhaaslGghavDGCge 25
                 +eC r  a ++    +DGC e
   KOO23277.1 42 RECARRRAHKMVFDYMDGCAE 62
                 8******************97 PP

  == domain 2  score: 7.1 bits;  conditional E-value: 0.003
  ZF-HD_dimer  39 kCaaCgChrnFHrr 52 
                   Ca C  hr FH  
   KOO23277.1 107 FCAPCAGHRMFHHE 120
                  6***********86 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (436 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       302  (0.0168442); expected 358.6 (0.02)
Passed bias filter:                      256  (0.0142785); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.49u 0.25s 00:00:00.74 Elapsed: 00:00:00.41
# Mc/sec: 3208.89
//
Query:       KOO23278.1  [L=352]
Description: hypothetical protein Ctob_011023, partial [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
  ------ inclusion threshold ------
       0.31   11.2  17.3       0.02   15.1   9.5    2.3  3  ATG16         Autophagy protein 16 (ATG16)
          3    8.2  14.1         24    5.3  13.2    2.2  2  OmpH          Outer membrane protein (OmpH-like)
        3.5    8.1  20.4        0.4   11.2  13.0    2.5  2  APG6_N        Apg6 coiled-coil region
          4    7.7  13.6        2.8    8.2   8.9    2.9  4  Seryl_tRNA_N  Seryl-tRNA synthetase N-terminal domain


Domain annotation for each model (and alignments):
>> ATG16  Autophagy protein 16 (ATG16)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.3   0.5      0.16   7.1e+02     114     141 ..      95     122 ..      64     136 .. 0.68
   2 ?    0.1   0.6      0.17   7.7e+02      34      51 ..     109     129 ..      99     185 .. 0.52
   3 ?   15.1   9.5   4.4e-06      0.02      70     178 ..     230     339 ..     198     347 .. 0.87

  Alignments for each domain:
  == domain 1  score: 0.3 bits;  conditional E-value: 0.16
       ATG16 114 leeklkedeerlaeleaeraaletklkd 141
                 +e   k+ +++la+ ++ r++l ++ ++
  KOO23278.1  95 KEGVKKSTSRELAAFRNAREQLAREAAS 122
                 4445566677777777777777766654 PP

  == domain 2  score: 0.1 bits;  conditional E-value: 0.17
       ATG16  34 leaenaklekaaasaks...s 51 
                  +  +++l ++aas+++   s
  KOO23278.1 109 FRNAREQLAREAASVTAdvgS 129
                 344555555555555554432 PP

  == domain 3  score: 15.1 bits;  conditional E-value: 4.4e-06
       ATG16  70 skqsakiqsleqklaqlreelae.lyksrgelaqrllelneelqkleeklkedeerlaeleaeraaletklkdreeelrekeklvqdlqDElsaLqlql 167
                 +++ a++ ++e + a++ +e a  ++ ++++l +r+++l+++ q  e+k+++ +++l++  +e  ale +l+ + ++ + + +  ++l   +++Lq +l
  KOO23278.1 230 TRRLATTVQSERLAAAQAAEAAGvSHSRCAKLGTRVQTLEAQSQLAEAKATKAQAALRAKDEELLALEAELRAQIQTNERQGEEGEELSLQVESLQARL 328
                 45566666677777777777776257789********************************************************************** PP

       ATG16 168 nqaEeklrkle 178
                   aEe+  ++e
  KOO23278.1 329 AVAEERAAEME 339
                 ******99886 PP

>> OmpH  Outer membrane protein (OmpH-like)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.1   0.0       0.1   4.6e+02      29      91 ..      59     124 ..      53     131 .. 0.59
   2 ?    5.3  13.2    0.0053        24      19      81 ..     269     333 ..     259     348 .. 0.70

  Alignments for each domain:
  == domain 1  score: 1.1 bits;  conditional E-value: 0.1
                 HHHHHHHHHHHHHHHHHHHHHHHHTTTS......-HHHHHH..HHHHHHHHHHHHHHHHHHHHHHHHHHH CS
        OmpH  29 kklqaeleakekelqklqeelqkkakkle.....keekeqe..lqkkeqelqqkqqqkaqelqkkqqell 91 
                 + ++ e++++  +l +l+++  ++    +     ++++ +e   +   +el + +++++++l+++ + ++
  KOO23278.1  59 EGWRREVDSLHSKLIALEKREAAAV---DvivnpRTTEGKEgvKKSTSRELAA-FRNAREQLAREAASVT 124
                 5566666666666666655554333...2445575555555556666777777.7777777777766655 PP

  == domain 2  score: 5.3 bits;  conditional E-value: 0.0053
                 HHHHHH.HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTS.-HHHHHH.HHHHHHHHHHHHHHHHH CS
        OmpH  19 aaqeql.ekkfkklqaeleakekelqklqeelqkkakklekeekeqe.lqkkeqelqqkqqqkaq 81 
                 +aq+ql e+k++k qa+l+ak +el +l++el ++ +++e++ +e e l  +++ lq++++ +++
  KOO23278.1 269 EAQSQLaEAKATKAQAALRAKDEELLALEAELRAQIQTNERQGEEGEeLSLQVESLQARLAVAEE 333
                 4666661456689*******************988888634434433588888888885544432 PP

>> APG6_N  Apg6 coiled-coil region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.6   0.7      0.16   7.3e+02      50      80 ..     100     116 ..      54     130 .. 0.43
   2 ?   11.2  13.0     9e-05       0.4      44     125 ..     246     334 ..     221     340 .. 0.86

  Alignments for each domain:
  == domain 1  score: 0.6 bits;  conditional E-value: 0.16
      APG6_N  50 eeleeeleklekeeeelleeLkelekereel 80 
                 +              +  +eL++  ++re+l
  KOO23278.1 100 K--------------STSRELAAFRNAREQL 116
                 2..............2222233333333333 PP

  == domain 2  score: 11.2 bits;  conditional E-value: 9e-05
      APG6_N  44 k.......qdeeleeleeeleklekeeeelleeLkelekereeleaelaaleeelealeeeeerfwreynelqlelleleeeldsleaq 125
                 +       +++ +++l  ++++le++ + ++++  +++++ ++ ++el ale+el+a  + +er  +e  el+l++++l+ +l+  e +
  KOO23278.1 246 QaaeaagvSHSRCAKLGTRVQTLEAQSQLAEAKATKAQAALRAKDEELLALEAELRAQIQTNERQGEEGEELSLQVESLQARLAVAEER 334
                 13334466788999999***************************************************************998877665 PP

>> Seryl_tRNA_N  Seryl-tRNA synthetase N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.5   0.0      0.33   1.5e+03      68      92 ..      57      81 ..      53      87 .. 0.78
   2 ?   -2.7   0.0       1.6     7e+03      35      48 ..     110     116 ..      94     137 .. 0.49
   3 ?    0.9   0.2      0.11   5.1e+02      74     102 ..     256     284 ..     236     287 .. 0.68
   4 ?    8.2   8.9   0.00062       2.8      34     105 ..     279     350 ..     259     352 .] 0.88

  Alignments for each domain:
  == domain 1  score: -0.5 bits;  conditional E-value: 0.33
                  -TCCCCCCCHHHHHHHHHHHHHHHH CS
  Seryl_tRNA_N 68 daeeliaevkelkeelkaleaelke 92
                  +ae  + ev++l  +l ale+++++
    KOO23278.1 57 EAEGWRREVDSLHSKLIALEKREAA 81
                  6777888899999999999988766 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 1.6
                   HHHHHHHHHHHHHH CS
  Seryl_tRNA_N  35 dekrrelqveleel 48 
                    ++r++       l
    KOO23278.1 110 RNAREQ-------L 116
                   222222.......2 PP

  == domain 3  score: 0.9 bits;  conditional E-value: 0.11
                   CCCHHHHHHHHHHHHHHHHHHHHHHHHHC CS
  Seryl_tRNA_N  74 aevkelkeelkaleaelkeleaeleklll 102
                    + ++l++++++lea+ + +ea+ +k+ +
    KOO23278.1 256 SRCAKLGTRVQTLEAQSQLAEAKATKAQA 284
                   45677888888888888877777777655 PP

  == domain 4  score: 8.2 bits;  conditional E-value: 0.00062
                   HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCTTS-TCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCTS- CS
  Seryl_tRNA_N  34 ldekrrelqveleelqaerNelskeIgkakkkkedaeeliaevkelkeelkaleaelkeleaeleklllaiP 105
                   + +++ +l+++ eel a   el ++I+   +++e+ eel  +v++l+++l+ +e++ +e+e + e + +++P
    KOO23278.1 279 ATKAQAALRAKDEELLALEAELRAQIQTNERQGEEGEELSLQVESLQARLAVAEERAAEMEGAAELARRELP 350
                   45677899999************************************************9988877766666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (352 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1162  (0.0648112); expected 358.6 (0.02)
Passed bias filter:                      429  (0.0239277); expected 358.6 (0.02)
Passed Vit filter:                        59  (0.00329076); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.50u 0.26s 00:00:00.76 Elapsed: 00:00:00.39
# Mc/sec: 2682.91
//
Query:       KOO23279.1  [L=463]
Description: hypothetical protein Ctob_011026 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    9.1e-33  113.2   0.0      2e-32  112.1   0.0    1.5  2  Glycos_transf_1  Glycosyl transferases group 1
    9.5e-29  100.5   0.1    2.4e-28   99.2   0.0    1.7  2  Glyco_trans_1_4  Glycosyl transferases group 1
    2.4e-21   76.5   0.0    1.3e-20   74.1   0.0    2.1  2  Glyco_transf_4   Glycosyltransferase Family 4
    6.5e-14   52.7   0.0    2.4e-13   50.9   0.0    1.9  2  Glyco_trans_4_4  Glycosyl transferase 4-like domain
    1.6e-11   44.5   0.0    4.1e-11   43.1   0.0    1.7  1  Glyco_trans_1_2  Glycosyl transferases group 1
      0.002   18.2   0.0     0.0033   17.4   0.0    1.5  1  Glyco_trans_4_2  Glycosyl transferase 4-like


Domain annotation for each model (and alignments):
>> Glycos_transf_1  Glycosyl transferases group 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.0       1.8   5.5e+03      31      47 ..     109     124 ..     107     126 .. 0.80
   2 !  112.1   0.0   6.8e-36     2e-32      13     171 ..     243     392 ..     237     393 .. 0.93

  Alignments for each domain:
  == domain 1  score: -3.3 bits;  conditional E-value: 1.8
                      HHHHHHHHCCCCCHCSC CS
  Glycos_transf_1  31 dllikafallkkqlnpn 47 
                      dl ++af++l+++ +p+
       KOO23279.1 109 DLGLEAFRRLRDR-KPD 124
                      6779******987.776 PP

  == domain 2  score: 112.1 bits;  conditional E-value: 6.8e-36
                      TT-EEEEEESS-TTTTTHHHHHHHHHCCCCCHCSCEEEEEES.STTHHHHHHHHHHHCTTCGGGEEECCHSSSHHHHHHCESEEEEEESSBSS- CS
  Glycos_transf_1  13 ekkkiilsvgrlekeKgvdllikafallkkqlnpnvklviaGngeeekelkklaeelelsdnviflgevsredleellknadifvlpsisEgfG 106
                       +++++l+vgrl +eK+++l+  +++++     p+++l i+G+g+ e  l+++      + +v+f g +  e+l   + +ad+fv+ps+sE +G
       KOO23279.1 243 PGRPLLLYVGRLGEEKNIQLIKGVLERI-----PEARLAIVGSGPAEPMLRAH----FKGMDVKFMGLLTGEALSRAYAAADVFVMPSESETLG 327
                      6899**********************86.....789******99997777766....445588*******9*********************** PP

                      HHHHHHHHTT--EEEETTTTHCHHCHTTTSEEEE-TT-HHHHHHHHHHHHHSHHHHHHHHHHHHH CS
  Glycos_transf_1 107 ivllEAmaaglpviasnaggpaevvkdgetGllvkpnnaealaeairklledeelrerlgenark 171
                       v+lEAma+ +p +   agg++ +v+dge+G+l+ p+++++l +++r ll+d++lr ++ge++r+
       KOO23279.1 328 FVVLEAMASQVPPVGARAGGIPNLVRDGENGYLFTPGDVDELTARVRTLLNDNKLRTKMGEAGRE 392
                      ***************************************************************97 PP

>> Glyco_trans_1_4  Glycosyl transferases group 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.0       3.7   1.1e+04      66      82 ..     182     200 ..     160     214 .. 0.61
   2 !   99.2   0.0   7.9e-32   2.4e-28       1     134 []     245     379 ..     245     379 .. 0.92

  Alignments for each domain:
  == domain 1  score: -3.3 bits;  conditional E-value: 3.7
                      HHHHHHH-SEEEE--.-.- CS
  Glyco_trans_1_4  66 laellaaadvfvaPs.e.g 82 
                      l+ +l+ ad+++a+s e +
       KOO23279.1 182 LPLALNYADLTLATSpElQ 200
                      5556777788887776432 PP

  == domain 2  score: 99.2 bits;  conditional E-value: 7.9e-32
                      SEEEEEES---GG.GTHHHHHHHHHHHH.HHEEEEEES---...HHHHHHHTT-T.TEEEE---..THHHHHHHH-SEEEE--..---SHHHHH CS
  Glyco_trans_1_4   1 rpvilfvGrleenvkgvdllleavpllrkkdvrlvivGdgp.rpeeleelaagleerveftGfv..edlaellaaadvfvaPs..egfglkllE 89 
                      rp +l+vGrl  ++k+++l+   ++++   ++rl ivG+gp +p  l++  +g+  +v+f+G +  e l++++aaadvfv+Ps  e++g ++lE
       KOO23279.1 245 RPLLLYVGRLG-EEKNIQLIKGVLERIP--EARLAIVGSGPaEP-MLRAHFKGM--DVKFMGLLtgEALSRAYAAADVFVMPSesETLGFVVLE 332
                      5889******5.5599*9999999***9..46*********665.998777786..6*****999888***************888******** PP

                      HHHTT-EEEE-TGGGTTT--..TTSSEE--TT-HHHHHHHHHHHHH- CS
  Glyco_trans_1_4  90 amaaglpvVatdvggiaevv..gengllvppgdpealaeailrLled 134
                      ama+++p V  ++ggi+++v  geng+l+ pgd+++l++++ +Ll+d
       KOO23279.1 333 AMASQVPPVGARAGGIPNLVrdGENGYLFTPGDVDELTARVRTLLND 379
                      *********************************************98 PP

>> Glyco_transf_4  Glycosyltransferase Family 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   74.1   0.0   4.3e-24   1.3e-20       3     169 ..      51     221 ..      49     222 .. 0.92
   2 ?   -0.7   0.0      0.42   1.3e+03     125     143 ..     305     323 ..     287     325 .. 0.82

  Alignments for each domain:
  == domain 1  score: 74.1 bits;  conditional E-value: 4.3e-24
  Glyco_transf_4   3 GverhvleLaraLarrGheVtvvtpgddgpleeev..elvvrvprvplpllkrllrslaflrrlrrllkrekpDvvHahspaalgaallalrrrl 95 
                     G  +   e+ r L + G + +v+tp+d ++ +++     ++ +++++lpl+k+ +++l   + + r+l+  kpD++H   p+++++ ++  +r l
      KOO23279.1  51 GYSNRFKEMLRFLKAGGDDAEVITPDDTPERPNNFlgMPITYIKGFRLPLYKQVQLTLDLGLEAFRRLRDRKPDLIHGVAPGFFVVPAIIYARLL 145
                     6667788999************************99989999999999**********************************999988888888* PP

  Glyco_transf_4  96 giplVltvHglye.....krllkarlkplsrllralerrllrradrviavSeatadelrerygvppekitVipnGvDle 169
                     ++plV+++H++ +     +   ++ +++  +l+++++  +l+ ad ++a+S++++++l + +g+++  ++V+  G+D+e
      KOO23279.1 146 NVPLVISYHTHLPnyasqYVKIPGLRQFCVKLAEWYLPLALNYADLTLATSPELQQQLTA-LGCKN--VEVWRKGIDTE 221
                     *************999886677788888889999999999********************.**986..**********8 PP

  == domain 2  score: -0.7 bits;  conditional E-value: 0.42
  Glyco_transf_4 125 alerrllrradrviavSea 143
                     + + r++ +ad ++ +Se+
      KOO23279.1 305 EALSRAYAAADVFVMPSES 323
                     5678899**********97 PP

>> Glyco_trans_4_4  Glycosyl transferase 4-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.9   0.0   7.9e-17   2.4e-13       1     153 [.      50     212 ..      50     217 .. 0.78
   2 ?   -2.0   0.0       1.5   4.4e+03     124     140 ..     308     324 ..     300     342 .. 0.82

  Alignments for each domain:
  == domain 1  score: 50.9 bits;  conditional E-value: 7.9e-17
  Glyco_trans_4_4   1 gGigryvaelaraLaarGheVtvltpapapgapeleedgvrvh.....rlpvprrpspladlaalralrrllrqrrerpdvvhahspt..agla 87 
                      +G++ ++ e++r L a G + +v+tp+++p++p  +  g +++     rlp++ + +++ dl  l a+rrl   r+++pd++h   p     +a
       KOO23279.1  50 SGYSNRFKEMLRFLKAGGDDAEVITPDDTPERP-NNFLGMPITyikgfRLPLYKQVQLTLDL-GLEAFRRL---RDRKPDLIHGVAPGffVVPA 138
                      59999*********************9999999.8889999994455555555554433332.35788888...7*********9997434455 PP

  Glyco_trans_4_4  88 arlarrrrgiplvvtlhglllrrg.........sgavrrlyralerrllrradavlvvseaeaeelralgvpadr 153
                      +  ar   ++plv+++h++l+++            ++  l+ +   ++l+ ad+ l++s+++ ++l+alg     
       KOO23279.1 139 IIYAR-LLNVPLVISYHTHLPNYAsqyvkipglRQFCVKLAEWYLPLALNYADLTLATSPELQQQLTALGCKNVE 212
                      56667.99*********99966444445544456777788899999************************98544 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 1.5
  Glyco_trans_4_4 124 rrllrradavlvvseae 140
                      +r+++ ad+++ +se+e
       KOO23279.1 308 SRAYAAADVFVMPSESE 324
                      67888999999999876 PP

>> Glyco_trans_1_2  Glycosyl transferases group 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.1   0.0   1.4e-14   4.1e-11       2      80 ..     317     397 ..     316     407 .. 0.94

  Alignments for each domain:
  == domain 1  score: 43.1 bits;  conditional E-value: 1.4e-14
  Glyco_trans_1_2   2 vLnpsrsespnlrlfEaaacGafaltddaegleelftpgkevilfe..dleelaekiryllanpeerraiaeaarervlae 80 
                      ++ ps+se++ ++++Ea+a+ ++ +  +a g+++l+++g+ + lf   d++el +++r ll++ ++r +++ea+re++l+ 
       KOO23279.1 317 FVMPSESETLGFVVLEAMASQVPPVGARAGGIPNLVRDGENGYLFTpgDVDELTARVRTLLNDNKLRTKMGEAGREETLKW 397
                      5679*************************************************************************9974 PP

>> Glyco_trans_4_2  Glycosyl transferase 4-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.4   0.0   1.1e-06    0.0033      16     111 ..      59     157 ..      36     196 .. 0.65

  Alignments for each domain:
  == domain 1  score: 17.4 bits;  conditional E-value: 1.1e-06
  Glyco_trans_4_2  16 lakeLakrgyeVhvitp.kkga..kdeleaegihvhrlkvdrkg..pleylkafklkklikkikPDvvhahyakpygllgslaarlsgvipvvl 104
                      + ++L++ g + +vitp ++++   ++l ++  +++ ++++     +l++   ++ ++ ++++kPD++h + +   ++ + + arl++ +p+v+
       KOO23279.1  59 MLRFLKAGGDDAEVITPdDTPErpNNFLGMPITYIKGFRLPLYKqvQLTLDLGLEAFRRLRDRKPDLIHGVAPGFFVVPAIIYARLLN-VPLVI 151
                      3666888888888888843343344444444445555566644412333323467777789***********988899999999*9*9.99999 PP

  Glyco_trans_4_2 105 svwGldv 111
                      s + ++ 
       KOO23279.1 152 SYH-THL 157
                      988.444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (463 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       378  (0.0210832); expected 358.6 (0.02)
Passed bias filter:                      355  (0.0198003); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.46u 0.25s 00:00:00.71 Elapsed: 00:00:00.38
# Mc/sec: 3680.49
//
Query:       KOO23280.1  [L=70]
Description: hypothetical protein Ctob_011027 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.6e-19   70.1  10.4    1.9e-19   69.9  10.4    1.0  1  ATP_synt_H  ATP synthase subunit H
  ------ inclusion threshold ------
        0.1   12.0   1.1       0.11   11.8   1.1    1.0  1  OST3_OST6   OST3 / OST6 family, transporter family


Domain annotation for each model (and alignments):
>> ATP_synt_H  ATP synthase subunit H
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.9  10.4   2.1e-23   1.9e-19       2      59 ..       5      66 ..       4      67 .. 0.93

  Alignments for each domain:
  == domain 1  score: 69.9 bits;  conditional E-value: 2.1e-23
                THHHHHHHHHHHTCSC...SSS-S.TTHH.HHHHHHHHHHHHHHHTCHHTSSSS-SS---XX CS
  ATP_synt_H  2 ilvgtiifavlgvvat...fvvpkgenrg.lirvlviltavccWlfWlcvYlaQmnPLiaPi 59
                i++gt+i+  +gv +t   f+vp+ ++ + l+ +l++lt++ccWl+W+++Y++Q+nPLiaPi
  KOO23280.1  5 IMTGTLIYGSIGVGVTiisFFVPACKQDQsLSTLLIWLTVICCWLMWVITYMMQLNPLIAPI 66
                899**********99999*9***9866655*******************************8 PP

>> OST3_OST6  OST3 / OST6 family, transporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   1.1   1.3e-05      0.11     237     285 ..      10      58 ..       3      61 .. 0.85

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 1.3e-05
   OST3_OST6 237 llygllallvilLiklvpriknakvqrvlvivllvlifllfslllslfr 285
                 l+yg ++++v ++ ++vp  k++++ ++l i l+v++++l+ +++++++
  KOO23280.1  10 LIYGSIGVGVTIISFFVPACKQDQSLSTLLIWLTVICCWLMWVITYMMQ 58 
                 79********************988888888888888888888887765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (70 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       822  (0.0458475); expected 358.6 (0.02)
Passed bias filter:                      392  (0.021864); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.32u 0.24s 00:00:00.56 Elapsed: 00:00:00.36
# Mc/sec: 582.56
//
Query:       KOO23281.1  [L=89]
Description: hypothetical protein Ctob_011024 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (89 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       517  (0.028836); expected 358.6 (0.02)
Passed bias filter:                      277  (0.0154498); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.22s 00:00:00.59 Elapsed: 00:00:00.39
# Mc/sec: 689.60
//
Query:       KOO23282.1  [L=673]
Description: hypothetical protein Ctob_011028 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
        4.4    7.4  30.6        1.4    8.9   1.8    4.8  6  DUF1664   Protein of unknown function (DUF1664)


Domain annotation for each model (and alignments):
>> DUF1664  Protein of unknown function (DUF1664)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.2   1.3    0.0046        83      43     114 ..     114     184 ..     104     193 .. 0.66
   2 ?    8.9   1.8   7.9e-05       1.4      54     106 ..     213     265 ..     194     273 .. 0.77
   3 ?    2.8   0.2    0.0065   1.2e+02      60     108 ..     379     421 ..     359     435 .. 0.69
   4 ?    4.9   1.1    0.0015        26      35     122 ..     379     470 ..     376     472 .. 0.70
   5 ?    7.2   4.3   0.00027       4.9      47     116 ..     462     532 ..     453     539 .. 0.85
   6 ?    4.6   3.5    0.0017        31      67     116 ..     482     532 ..     479     561 .. 0.50

  Alignments for each domain:
  == domain 1  score: 3.2 bits;  conditional E-value: 0.0046
     DUF1664  43 vesvskqleqvseslaatkrhLssridrvdkkldeqkeiskeikeevtevredlseigedvesvkeavegle 114
                  e++ + l +  ++la++k+ + ++   ++++l eq +  + +++e+ ++++ ++  ++  +  +e v  l 
  KOO23282.1 114 REHLKEALATKTAELASAKKMI-QKPTLMERELAEQGAELERTRAELLDAHKRIKGHERRATMAEERVAALR 184
                 4455556666666777776644.4456677777777777777777777777777777777766666666665 PP

  == domain 2  score: 8.9 bits;  conditional E-value: 7.9e-05
     DUF1664  54 seslaatkrhLssridrvdkkldeqkeiskeikeevtevredlseigedvesv 106
                  ++ a+ k hL+ +i+++ k+l e+    ++++++++ +r+++++++e  + +
  KOO23282.1 213 EQQDADEKVHLEFEIKQLRKSLSESVSERQQLTSKLDGMRGKVQQLSEAQKRL 265
                 44557789999999999999999999999999999999999999998876665 PP

  == domain 3  score: 2.8 bits;  conditional E-value: 0.0065
     DUF1664  60 tkrhLssridrvdkkldeqkeiskeikeevtevredlseigedvesvke 108
                 t+          d+ l + +++ +e ++e+t ++++l+e++++++ v++
  KOO23282.1 379 TR------SRMADAALAAAAAAEREARAELTGAQRQLKELRTKLNLVED 421
                 33......33457788888888888899999999999998888888776 PP

  == domain 4  score: 4.9 bits;  conditional E-value: 0.0015
     DUF1664  35 Tkrslsdavesvskqle.qvseslaatkr...hLssridrvdkkldeqkeiskeikeevtevredlseigedvesvkeavegleskleriee 122
                 T+  ++da    +   e +  ++l+ ++r   +L  +++ v++ l++ +  s+e+++ +++  ++l++ + + e+ ++a ++  +++e+ie+
  KOO23282.1 379 TRSRMADAALAAAAAAErEARAELTGAQRqlkELRTKLNLVEDGLEKGASESHELRQALAASVQELRQARAQAEAAQRAERHASARVEEIED 470
                 66666665544444443134455555554111567799999999999999999999999999999999999999999988888888888885 PP

  == domain 5  score: 7.2 bits;  conditional E-value: 0.00027
     DUF1664  47 skqleqvseslaatkrhLssridrvdkkldeqkeis.keikeevtevredlseigedvesvkeaveglesk 116
                 s ++e++ ++  +  +h ++rid +++++ e++e+s +++k+   +v++++++ +++ e++k+ v +l  k
  KOO23282.1 462 SARVEEIEDARISEAEHAKERIDALEAQVREMQEASvAAVKNRPLTVQREMRDSQKEAEALKAQVAELTRK 532
                 667777777777778999*************999873689999***********************99877 PP

  == domain 6  score: 4.6 bits;  conditional E-value: 0.0017
     DUF1664  67 ridrvdkkldeqkeis.keikeevtevredlseigedvesvkeaveglesk 116
                 rid +++++ e++e+s +++k+   +v++++++ +++ e++k+ v +l  k
  KOO23282.1 482 RIDALEAQVREMQEASvAAVKNRPLTVQREMRDSQKEAEALKAQVAELTRK 532
                 555555555555544323455555555555555555555555555555443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (673 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2866  (0.159853); expected 358.6 (0.02)
Passed bias filter:                      645  (0.0359752); expected 358.6 (0.02)
Passed Vit filter:                       141  (0.00786435); expected 17.9 (0.001)
Passed Fwd filter:                        73  (0.00407162); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 1.84u 0.38s 00:00:02.22 Elapsed: 00:00:00.62
# Mc/sec: 3287.57
//
Query:       KOO23283.1  [L=190]
Description: hypothetical protein Ctob_011029 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    9.6e-12   45.1   0.0    0.00012   22.2   0.0    2.3  2  UPF0047   Uncharacterised protein family UPF0047


Domain annotation for each model (and alignments):
>> UPF0047  Uncharacterised protein family UPF0047
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.9   0.0   1.8e-08   0.00031       2      36 ..      33      69 ..      32      85 .. 0.87
   2 !   22.2   0.0   6.7e-09   0.00012      78     104 ..     102     128 ..      98     142 .. 0.81

  Alignments for each domain:
  == domain 1  score: 20.9 bits;  conditional E-value: 1.8e-08
                -HHHHHHHHHH..HT.SEEEEEEEESSSSEEEEEEES CS
     UPF0047  2 iteeveeavke..sgvkeGlvlvfsrhttasltinEn 36
                it +v e++ +  +++++G++++f+++ ++slt+n n
  KOO23283.1 33 ITTHVVEVLGSqlTEMQHGMCNIFVQDMSCSLTVNQN 69
                88899999877679*********************97 PP

  == domain 2  score: 22.2 bits;  conditional E-value: 6.7e-09
                 -SEEEEEEETTEE---TTEEEEEEESS CS
     UPF0047  78 gssltipvedgklalGtwqsiylveld 104
                  +sl+ipv++gklalG +q++yl+e+ 
  KOO23283.1 102 AKSLSIPVTSGKLALGPMQGLYLCEHG 128
                 689**********************94 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (190 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       294  (0.016398); expected 358.6 (0.02)
Passed bias filter:                      278  (0.0155056); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.25s 00:00:00.63 Elapsed: 00:00:00.38
# Mc/sec: 1482.56
//
Query:       KOO23284.1  [L=455]
Description: calmodulin-like protein 12-like protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    3.7e-35  116.8  15.8    1.1e-05   24.9   0.1    8.3  8  EF-hand_6     EF-hand domain
    3.9e-35  116.8  13.4    8.9e-07   28.0   1.0    8.3  8  EF-hand_1     EF hand
    6.9e-33  112.9  10.7    9.7e-11   42.0   0.3    4.3  4  EF-hand_7     EF-hand domain pair
    4.1e-22   77.8   7.3    5.1e-07   29.4   0.2    5.5  5  EF-hand_8     EF-hand domain pair
    3.4e-21   73.7  27.4    4.6e-05   22.7   0.1    7.7  8  EF-hand_5     EF hand
    5.4e-08   33.2   0.1     0.0053   17.1   0.0    4.2  4  SPARC_Ca_bdg  Secreted protein acidic and rich in cysteine Ca
    0.00075   20.3   0.0        1.6    9.7   0.0    4.1  4  EF-hand_11    EF-hand domain
  ------ inclusion threshold ------
      0.011   16.0   0.4      0.051   13.9   0.1    2.1  2  DUF440        Protein of unknown function, DUF440
      0.038   13.9   1.0         64    3.4   0.0    4.7  7  Caleosin      Caleosin related protein
       0.19   11.8   4.0         17    5.6   0.6    3.7  3  DUF1707       Domain of unknown function (DUF1707)


Domain annotation for each model (and alignments):
>> EF-hand_6  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.6   0.0      0.02        37      13      27 ..      44      58 ..      30      63 .. 0.78
   2 !   17.1   0.4     2e-06    0.0036       2      24 ..      70      92 ..      69      99 .. 0.88
   3 !   14.5   0.1   1.4e-05     0.025       2      31 .]     106     134 ..     105     134 .. 0.91
   4 ?    2.7   0.0     0.086   1.5e+02       2      18 ..     142     158 ..     141     160 .. 0.88
   5 !   13.6   0.0   2.6e-05     0.047       2      26 ..     228     252 ..     227     256 .. 0.88
   6 !   24.9   0.1   6.4e-09   1.1e-05       2      27 ..     265     290 ..     264     293 .. 0.93
   7 !   21.3   0.0     9e-08   0.00016       5      31 .]     359     384 ..     359     384 .. 0.93
   8 !   21.5   0.0   7.9e-08   0.00014       3      27 ..     393     417 ..     391     422 .. 0.92

  Alignments for each domain:
  == domain 1  score: 4.6 bits;  conditional E-value: 0.02
   EF-hand_6 13 gdGkidaeElrkalr 27
                 +G++d+ E+ +++r
  KOO23284.1 44 ASGELDFREFSRMIR 58
                89**********999 PP

  == domain 2  score: 17.1 bits;  conditional E-value: 2e-06
   EF-hand_6  2 lreaFklfDkdgdGkidaeElrk 24
                l+e F+++Dkdg G+ida+E ++
  KOO23284.1 70 LKERFDAIDKDGGGTIDADEYMA 92
                7899****************877 PP

  == domain 3  score: 14.5 bits;  conditional E-value: 1.4e-05
   EF-hand_6   2 lreaFklfDkdgdGkidaeElrkalrkalg 31 
                 l ++F  +D dg G++d+ E+r++ r ++g
  KOO23284.1 106 LVDLFSDWDADGGGSVDKVEFRNVVR-SFG 134
                 6799********************99.765 PP

  == domain 4  score: 2.7 bits;  conditional E-value: 0.086
   EF-hand_6   2 lreaFklfDkdgdGkid 18 
                 ++++F  fD   +G+++
  KOO23284.1 142 IDKLFARFDLQSTGELS 158
                 6799**********997 PP

  == domain 5  score: 13.6 bits;  conditional E-value: 2.6e-05
   EF-hand_6   2 lreaFklfDkdgdGkidaeElrkal 26 
                 ++++F+ +D dgd  i++ E+r+a 
  KOO23284.1 228 VMDLFRSWDADGDALISKTEFRQAV 252
                 679*******************986 PP

  == domain 6  score: 24.9 bits;  conditional E-value: 6.4e-09
   EF-hand_6   2 lreaFklfDkdgdGkidaeElrkalr 27 
                 ++e+F+++Dkdg+G+i+++E+r+a++
  KOO23284.1 265 VDELFDELDKDGSGEISFNEMRDAIK 290
                 579*********************97 PP

  == domain 7  score: 21.3 bits;  conditional E-value: 9e-08
   EF-hand_6   5 aFklfDkdgdGkidaeElrkalrkalg 31 
                 +F+ +D+d++G+i++ Elrkal  +lg
  KOO23284.1 359 LFQTWDTDRNGTISRLELRKALG-ELG 384
                 69********************8.676 PP

  == domain 8  score: 21.5 bits;  conditional E-value: 7.9e-08
   EF-hand_6   3 reaFklfDkdgdGkidaeElrkalr 27 
                 +++F+++D +++G i+ +E++ al+
  KOO23284.1 393 DSLFDAIDANRSGAITLDEFQLALQ 417
                 689********************98 PP

>> EF-hand_1  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.6   0.0     0.015        27      14      27 ..      45      58 ..      44      60 .. 0.90
   2 !   16.7   0.2     2e-06    0.0037       2      25 ..      70      93 ..      69      95 .. 0.92
   3 !   12.6   0.1   4.3e-05     0.077       3      28 ..     107     132 ..     105     133 .. 0.91
   4 ?    4.0   0.0     0.024        43       2      19 ..     142     159 ..     141     162 .. 0.91
   5 !   14.2   0.0   1.3e-05     0.024       2      26 ..     228     252 ..     227     255 .. 0.91
   6 !   28.0   1.0     5e-10   8.9e-07       2      27 ..     265     290 ..     264     291 .. 0.94
   7 !   17.6   0.0   1.1e-06     0.002       4      27 ..     358     381 ..     355     383 .. 0.89
   8 !   20.0   0.0   1.9e-07   0.00034       2      27 ..     392     417 ..     391     419 .. 0.92

  Alignments for each domain:
  == domain 1  score: 4.6 bits;  conditional E-value: 0.015
                SSEEEHHHHHHHHH CS
   EF-hand_1 14 dGkIdfeEfkellk 27
                +G +df Ef ++++
  KOO23284.1 45 SGELDFREFSRMIR 58
                7**********997 PP

  == domain 2  score: 16.7 bits;  conditional E-value: 2e-06
                HHHHHHHHTTTSSSEEEHHHHHHH CS
   EF-hand_1  2 lkeiFrefDkDgdGkIdfeEfkel 25
                lke F+ +DkDg G+Id +E++++
  KOO23284.1 70 LKERFDAIDKDGGGTIDADEYMAF 93
                7999****************9876 PP

  == domain 3  score: 12.6 bits;  conditional E-value: 4.3e-05
                 HHHHHHHTTTSSSEEEHHHHHHHHHH CS
   EF-hand_1   3 keiFrefDkDgdGkIdfeEfkellkk 28 
                  ++F++ D Dg G +d+ Ef++++++
  KOO23284.1 107 VDLFSDWDADGGGSVDKVEFRNVVRS 132
                 579********************987 PP

  == domain 4  score: 4.0 bits;  conditional E-value: 0.024
                 HHHHHHHHTTTSSSEEEH CS
   EF-hand_1   2 lkeiFrefDkDgdGkIdf 19 
                 ++++F+ fD   +G +++
  KOO23284.1 142 IDKLFARFDLQSTGELSL 159
                 79************9985 PP

  == domain 5  score: 14.2 bits;  conditional E-value: 1.3e-05
                 HHHHHHHHTTTSSSEEEHHHHHHHH CS
   EF-hand_1   2 lkeiFrefDkDgdGkIdfeEfkell 26 
                 + ++Fr  D Dgd  I++ Ef++++
  KOO23284.1 228 VMDLFRSWDADGDALISKTEFRQAV 252
                 5789******************986 PP

  == domain 6  score: 28.0 bits;  conditional E-value: 5e-10
                 HHHHHHHHTTTSSSEEEHHHHHHHHH CS
   EF-hand_1   2 lkeiFrefDkDgdGkIdfeEfkellk 27 
                 ++e+F+e+DkDg+G I+f+E+++++k
  KOO23284.1 265 VDELFDELDKDGSGEISFNEMRDAIK 290
                 79*********************987 PP

  == domain 7  score: 17.6 bits;  conditional E-value: 1.1e-06
                 HHHHHHTTTSSSEEEHHHHHHHHH CS
   EF-hand_1   4 eiFrefDkDgdGkIdfeEfkellk 27 
                 ++F+  D+D++G+I++ E++++l 
  KOO23284.1 358 WLFQTWDTDRNGTISRLELRKALG 381
                 68*******************986 PP

  == domain 8  score: 20.0 bits;  conditional E-value: 1.9e-07
                 HHHHHHHHTTTSSSEEEHHHHHHHHH CS
   EF-hand_1   2 lkeiFrefDkDgdGkIdfeEfkellk 27 
                 ++ +F+ +D +++G I+++Ef+ +l+
  KOO23284.1 392 VDSLFDAIDANRSGAITLDEFQLALQ 417
                 6889******************9987 PP

>> EF-hand_7  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.1   0.5   8.9e-08   0.00016      16      69 ..      45      93 ..      36      95 .. 0.91
   2 !   17.0   0.2   3.5e-06    0.0062       6      63 ..     108     159 ..     104     159 .. 0.92
   3 !   42.0   0.3   5.4e-14   9.7e-11       3      70 ..     227     289 ..     225     290 .. 0.90
   4 !   36.3   0.0   3.2e-12   5.8e-09       5      68 ..     357     414 ..     355     417 .. 0.87

  Alignments for each domain:
  == domain 1  score: 22.1 bits;  conditional E-value: 8.9e-08
   EF-hand_7 16 dgyldkeellrllrkifqgagegsklsdeelellfkefDtdkdGvisfdEFlkl 69
                +g ld +e+ r++r      +e+ + ++++l++ f+ +D+d+ G+i+ dE++++
  KOO23284.1 45 SGELDFREFSRMIRE-----REMGVHTEQALKERFDAIDKDGGGTIDADEYMAF 93
                68899*********8.....7777779999*********************998 PP

  == domain 2  score: 17.0 bits;  conditional E-value: 3.5e-06
   EF-hand_7   6 eaFkelDtdgdgyldkeellrllrkifqgagegsklsdeelellfkefDtdkdGvisf 63 
                 + F   D dg g++dk e+++++r      + g++ +d  +++lf  fD+ + G++s+
  KOO23284.1 108 DLFSDWDADGGGSVDKVEFRNVVR------SFGFECRDALIDKLFARFDLQSTGELSL 159
                 679999******************......99***89999**************9985 PP

  == domain 3  score: 42.0 bits;  conditional E-value: 5.4e-14
   EF-hand_7   3 klkeaFkelDtdgdgyldkeellrllrkifqgagegsklsdeelellfkefDtdkdGvisfdEFlkly 70 
                 ++++ F++ D dgd  ++k+e+++++  +    g + + +++++++lf+e+D+d++G+isf+E++ ++
  KOO23284.1 227 RVMDLFRSWDADGDALISKTEFRQAVLVL----GLDGV-PRKQVDELFDELDKDGSGEISFNEMRDAI 289
                 67999******************988765....77777.788**********************9886 PP

  == domain 4  score: 36.3 bits;  conditional E-value: 3.2e-12
   EF-hand_7   5 keaFkelDtdgdgyldkeellrllrkifqgagegsklsdeelellfkefDtdkdGvisfdEFlk 68 
                  + F+  Dtd++g +++ el+++l  +    g g+  ++ +++ lf+ +D +++G i++dEF+ 
  KOO23284.1 357 TWLFQTWDTDRNGTISRLELRKALGEL----GLGE--HPRAVDSLFDAIDANRSGAITLDEFQL 414
                 689*********************954....5555..5557*********************85 PP

>> EF-hand_8  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.8   0.3   2.2e-05     0.039       2      52 ..      45      94 ..      44      96 .. 0.83
   2 ?    3.4   0.0     0.039        70      30      52 ..     108     130 ..     102     132 .. 0.86
   3 !   29.4   0.2   2.9e-10   5.1e-07       2      47 ..     240     284 ..     230     289 .. 0.93
   4 !    9.3   0.0   0.00056         1      28      46 ..     356     374 ..     343     380 .. 0.84
   5 !   27.1   0.0   1.5e-09   2.8e-06       3      48 ..     369     412 ..     368     416 .. 0.87

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 2.2e-05
   EF-hand_8  2 kgkItreelrril.rilglkkglseeevdilfrefDtdgdGkisfeEFcvll 52
                +g++++ e++r++     +    +e+++ + f+++D dg G+i+ +E+++++
  KOO23284.1 45 SGELDFREFSRMIrER-EMG-VHTEQALKERFDAIDKDGGGTIDADEYMAFA 94
                6999999999988422.333.369999**********************985 PP

  == domain 2  score: 3.4 bits;  conditional E-value: 0.039
   EF-hand_8  30 ilfrefDtdgdGkisfeEFcvll 52 
                 +lf+  D dg G +++ EF +++
  KOO23284.1 108 DLFSDWDADGGGSVDKVEFRNVV 130
                 789999*************8875 PP

  == domain 3  score: 29.4 bits;  conditional E-value: 2.9e-10
   EF-hand_8   2 kgkItreelrrilrilglkkglseeevdilfrefDtdgdGkisfeE 47 
                 +  I+++e+r ++ +lgl  g+  ++vd+lf+e+D dg+G isf+E
  KOO23284.1 240 DALISKTEFRQAVLVLGLD-GVPRKQVDELFDELDKDGSGEISFNE 284
                 679********99777999.6************************9 PP

  == domain 4  score: 9.3 bits;  conditional E-value: 0.00056
   EF-hand_8  28 vdilfrefDtdgdGkisfe 46 
                 v++lf + Dtd++G+is  
  KOO23284.1 356 VTWLFQTWDTDRNGTISRL 374
                 899*************975 PP

  == domain 5  score: 27.1 bits;  conditional E-value: 1.5e-09
   EF-hand_8   3 gkItreelrrilrilglkkglseeevdilfrefDtdgdGkisfeEF 48 
                 g I+r elr++l  lgl     + +vd+lf+++D +++G+i+++EF
  KOO23284.1 369 GTISRLELRKALGELGLG--EHPRAVDSLFDAIDANRSGAITLDEF 412
                 89********99334655..56778********************9 PP

>> EF-hand_5  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.7   0.0      0.24   4.3e+02      13      24 ..      45      56 ..      44      57 .. 0.88
   2 !   16.7   0.3     2e-06    0.0036       1      24 [.      70      93 ..      70      94 .. 0.89
   3 !    6.5   0.2    0.0035       6.3       1      25 []     106     130 ..     106     130 .. 0.93
   4 ?   -1.9   0.4       1.6   2.8e+03       1      10 [.     142     151 ..     142     151 .. 0.85
   5 !    8.8   0.0   0.00065       1.2       3      23 ..     230     250 ..     228     254 .. 0.87
   6 !   18.6   1.2   5.1e-07   0.00091       2      22 ..     266     286 ..     265     289 .. 0.89
   7 !   13.8   0.0   1.7e-05     0.031       5      23 ..     360     378 ..     357     380 .. 0.89
   8 !   22.7   0.1   2.5e-08   4.6e-05       2      22 ..     393     413 ..     392     416 .. 0.89

  Alignments for each domain:
  == domain 1  score: 0.7 bits;  conditional E-value: 0.24
                SSCE-HHHHHHH CS
   EF-hand_5 13 DGkIskeELktl 24
                +G +++ E+ ++
  KOO23284.1 45 SGELDFREFSRM 56
                799******987 PP

  == domain 2  score: 16.7 bits;  conditional E-value: 2e-06
                HHHHHHHH-SS-SSCE-HHHHHHH CS
   EF-hand_5  1 lkdtFqaiDlNgDGkIskeELktl 24
                lk+ F+aiD++g G+I+++E +++
  KOO23284.1 70 LKERFDAIDKDGGGTIDADEYMAF 93
                5677****************9887 PP

  == domain 3  score: 6.5 bits;  conditional E-value: 0.0035
                 HHHHHHHH-SS-SSCE-HHHHHHHH CS
   EF-hand_5   1 lkdtFqaiDlNgDGkIskeELktlv 25 
                 l+d+F+  D++g G ++k E++++v
  KOO23284.1 106 LVDLFSDWDADGGGSVDKVEFRNVV 130
                 7899999***************986 PP

  == domain 4  score: -1.9 bits;  conditional E-value: 1.6
                 HHHHHHHH-S CS
   EF-hand_5   1 lkdtFqaiDl 10 
                 ++++F ++Dl
  KOO23284.1 142 IDKLFARFDL 151
                 6789*****6 PP

  == domain 5  score: 8.8 bits;  conditional E-value: 0.00065
                 HHHHHH-SS-SSCE-HHHHHH CS
   EF-hand_5   3 dtFqaiDlNgDGkIskeELkt 23 
                 d+F+  D++gD  Isk E+++
  KOO23284.1 230 DLFRSWDADGDALISKTEFRQ 250
                 789999*************98 PP

  == domain 6  score: 18.6 bits;  conditional E-value: 5.1e-07
                 HHHHHHH-SS-SSCE-HHHHH CS
   EF-hand_5   2 kdtFqaiDlNgDGkIskeELk 22 
                 +++F+++D++g+G Is+ E +
  KOO23284.1 266 DELFDELDKDGSGEISFNEMR 286
                 469****************87 PP

  == domain 7  score: 13.8 bits;  conditional E-value: 1.7e-05
                 HHHH-SS-SSCE-HHHHHH CS
   EF-hand_5   5 FqaiDlNgDGkIskeELkt 23 
                 Fq  D+++ G+Is+ EL++
  KOO23284.1 360 FQTWDTDRNGTISRLELRK 378
                 8888*************97 PP

  == domain 8  score: 22.7 bits;  conditional E-value: 2.5e-08
                 HHHHHHH-SS-SSCE-HHHHH CS
   EF-hand_5   2 kdtFqaiDlNgDGkIskeELk 22 
                 + +F+aiD+N++G I+ +E++
  KOO23284.1 393 DSLFDAIDANRSGAITLDEFQ 413
                 459*****************8 PP

>> SPARC_Ca_bdg  Secreted protein acidic and rich in cysteine Ca binding region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.6   0.0      0.01        19      35     111 ..      13      91 ..       2      93 .. 0.77
   2 ?   -0.3   0.0      0.73   1.3e+03      60      99 ..     110     151 ..      96     160 .. 0.67
   3 ?    4.4   0.0     0.025        45      59     109 ..     231     284 ..     213     288 .. 0.63
   4 !   17.1   0.0   2.9e-06    0.0053      55     110 ..     355     412 ..     343     414 .. 0.87

  Alignments for each domain:
  == domain 1  score: 5.6 bits;  conditional E-value: 0.01
  SPARC_Ca_bdg  35 ehleelekkeeeknlkeckepvawkFsklDtnsdkvlsksELapl...raplvklehCikpflescDadkdkkislkEwc 111
                    + ++ ++ e +k+ +++  ++a +F++l     + l+ +E + +   r+  v++e+  k+ +++ D d  ++i++ E++
    KOO23284.1  13 PQIANAMRAEAKKSFEITMRQAAMEFDELSGA-SGELDFREFSRMireREMGVHTEQALKERFDAIDKDGGGTIDADEYM 91 
                   345566777778888999999999***99765.6789999999873323345899***********************97 PP

  == domain 2  score: -0.3 bits;  conditional E-value: 0.73
  SPARC_Ca_bdg  60 FsklDtnsdkvlsksELaplrapl..vklehCikpflescDa 99 
                   Fs++D +  ++++k E +++  ++     +  i++++ + D+
    KOO23284.1 110 FSDWDADGGGSVDKVEFRNVVRSFgfECRDALIDKLFARFDL 151
                   899999999999999999887643113334445555555555 PP

  == domain 3  score: 4.4 bits;  conditional E-value: 0.025
  SPARC_Ca_bdg  59 kFsklDtnsdkvlsksELaplrapl..vkl.ehCikpflescDadkdkkislkE 109
                    F ++D + d ++sk+E ++  + l  + +  + +++++++ D d  ++is +E
    KOO23284.1 231 LFRSWDADGDALISKTEFRQAVLVLglDGVpRKQVDELFDELDKDGSGEISFNE 284
                   477777777777777777765443311222123456667777777777777666 PP

  == domain 4  score: 17.1 bits;  conditional E-value: 2.9e-06
  SPARC_Ca_bdg  55 pvawkFsklDtnsdkvlsksELaplraplvkleh..CikpflescDadkdkkislkEw 110
                    v+w F+++Dt++++++s+ EL++   +l   eh   ++ ++++ Da++ + i+l E+
    KOO23284.1 355 RVTWLFQTWDTDRNGTISRLELRKALGELGLGEHprAVDSLFDAIDANRSGAITLDEF 412
                   689*******************99877776666533899******************9 PP

>> EF-hand_11  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.0       1.9   3.3e+03      39      63 ..      51      75 ..      14     105 .. 0.57
   2 ?    0.8   0.0      0.51   9.1e+02      22      79 ..     106     163 ..      86     174 .. 0.79
   3 ?    3.4   0.0     0.081   1.5e+02      23      78 ..     229     285 ..     215     303 .. 0.82
   4 !    9.7   0.0   0.00088       1.6       4      46 ..     338     380 ..     336     426 .. 0.78

  Alignments for each domain:
  == domain 1  score: -1.0 bits;  conditional E-value: 1.9
                HHHHHHHHHHHT----HHHHHHHHH CS
  EF-hand_11 39 reefraictrrvqiltdeqfdrlws 63
                re  r i +r++ + t++ +   ++
  KOO23284.1 51 REFSRMIREREMGVHTEQALKERFD 75
                4444666666666666554444444 PP

  == domain 2  score: 0.8 bits;  conditional E-value: 0.51
                 HHHHHHHH-TT-SSEE-HHHHHHHHHHHT----HHHHHHHHHTS-B-TTS-EEHHHHH CS
  EF-hand_11  22 ivqefenfdtlksntvsreefraictrrvqiltdeqfdrlwselpvnakgrlkyqdfl 79 
                 +v+ f ++d+    +v + efr ++        d  +d+l++ + +++ g l      
  KOO23284.1 106 LVDLFSDWDADGGGSVDKVEFRNVVRSFGFECRDALIDKLFARFDLQSTGELSLGMVS 163
                 6777889999999999999***999888778889999999999999998888765555 PP

  == domain 3  score: 3.4 bits;  conditional E-value: 0.081
                 HHHHHHH-TT-SSEE-HHHHH.HHHHHHT----HHHHHHHHHTS-B-TTS-EEHHHH CS
  EF-hand_11  23 vqefenfdtlksntvsreefr.aictrrvqiltdeqfdrlwselpvnakgrlkyqdf 78 
                 ++ f  +d+     +s+ efr a+    ++ +  +q d l++el  +  g + ++++
  KOO23284.1 229 MDLFRSWDADGDALISKTEFRqAVLVLGLDGVPRKQVDELFDELDKDGSGEISFNEM 285
                 556778888888899*****94567788999999**********9999999988776 PP

  == domain 4  score: 9.7 bits;  conditional E-value: 0.00088
                 HHHHHHHHHHHHHHSHHHHHHHHHHH-TT-SSEE-HHHHHHHH CS
  EF-hand_11   4 drdilarlqkavashyhaivqefenfdtlksntvsreefraic 46 
                 d d++a+l + +a+ +  ++  f+ +dt +  t+sr e+r   
  KOO23284.1 338 DYDLIAQLTHGLATNWGRVTWLFQTWDTDRNGTISRLELRKAL 380
                 679***********************************99754 PP

>> DUF440  Protein of unknown function, DUF440
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.1   2.9e-05     0.051      20      85 ..      82     150 ..      64     157 .. 0.79
   2 ?   -1.1   0.0       1.3   2.4e+03      43      81 ..     228     269 ..     222     272 .. 0.71

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 2.9e-05
      DUF440  20 adnLdpadillfnlq.feerGavelvepaedWeeevgvevdkeeyaevl..iGLeeeqdelddiFariL 85 
                    +d  + + f l    er a+ lv+   dW+++ g +vdk e+ +v+   G e  ++ +d++Far+ 
  KOO23284.1  82 GGTIDADEYMAFALTdAFERSAAHLVDLFSDWDADGGGSVDKVEFRNVVrsFGFECRDALIDKLFARFD 150
                 556777788888775234799***************************8446889999*********85 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 1.3
      DUF440  43 lvepaedWeeevgvevdkeeyaev..liGL.eeeqdelddiF 81 
                 +++    W+++ +  ++k e+ +   ++GL     +++d++F
  KOO23284.1 228 VMDLFRSWDADGDALISKTEFRQAvlVLGLdGVPRKQVDELF 269
                 566677899999999999999875114577656677777777 PP

>> Caleosin  Caleosin related protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.0       1.9   3.5e+03      88     115 ..      63      90 ..      38      98 .. 0.66
   2 ?   -0.7   0.0      0.66   1.2e+03      13      46 ..     113     146 ..     104     159 .. 0.80
   3 ?   -0.6   0.0      0.63   1.1e+03      95     131 ..     142     178 ..     136     191 .. 0.82
   4 ?   -0.2   0.0      0.46   8.2e+02      13      35 ..     235     257 ..     231     261 .. 0.87
   5 ?    3.4   0.0     0.036        64      93     128 ..     263     298 ..     259     314 .. 0.81
   6 ?    2.5   0.0      0.07   1.3e+02      12      36 ..     362     386 ..     359     388 .. 0.89
   7 ?   -1.7   0.0       1.3   2.3e+03      92     121 ..     389     418 ..     386     425 .. 0.81

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 1.9
    Caleosin  88 Grfvpqkfeeifskyakekkdaltlkev 115
                 G +++q + e f+  +k+  +++ ++e 
  KOO23284.1  63 GVHTEQALKERFDAIDKDGGGTIDADEY 90 
                 5555666666666666666666666555 PP

  == domain 2  score: -0.7 bits;  conditional E-value: 0.66
    Caleosin  13 fDrdkdGiiypldtyrgfralgfnvllsllaalv 46 
                 +D d  G +  ++  + +r++gf++  +l+  l+
  KOO23284.1 113 WDADGGGSVDKVEFRNVVRSFGFECRDALIDKLF 146
                 9999999999999999999999998777766655 PP

  == domain 3  score: -0.6 bits;  conditional E-value: 0.63
    Caleosin  95 feeifskyakekkdaltlkevlellkgqrealDlfgw 131
                  +++f++++ +++++l+l  v + l+++++  +  g 
  KOO23284.1 142 IDKLFARFDLQSTGELSLGMVSRRLQAEMNERESRGR 178
                 6899*****************9999999988777765 PP

  == domain 4  score: -0.2 bits;  conditional E-value: 0.46
    Caleosin  13 fDrdkdGiiypldtyrgfralgf 35 
                 +D d d +i  ++  +++  lg+
  KOO23284.1 235 WDADGDALISKTEFRQAVLVLGL 257
                 9***********99999988887 PP

  == domain 5  score: 3.4 bits;  conditional E-value: 0.036
    Caleosin  93 qkfeeifskyakekkdaltlkevlellkgqrealDl 128
                 ++ +e+f++ +k+ +++++++e+ + +kg +e++ +
  KOO23284.1 263 KQVDELFDELDKDGSGEISFNEMRDAIKGPEETAPV 298
                 6789**********************9998876655 PP

  == domain 6  score: 2.5 bits;  conditional E-value: 0.07
    Caleosin  12 FfDrdkdGiiypldtyrgfralgfn 36 
                  +D+d++G+i  l+  +++ +lg++
  KOO23284.1 362 TWDTDRNGTISRLELRKALGELGLG 386
                 5**************9999999975 PP

  == domain 7  score: -1.7 bits;  conditional E-value: 1.3
    Caleosin  92 pqkfeeifskyakekkdaltlkevlellkg 121
                 p+  +++f+  ++++++a+tl+e++  l++
  KOO23284.1 389 PRAVDSLFDAIDANRSGAITLDEFQLALQA 418
                 566789999999999999999999877766 PP

>> DUF1707  Domain of unknown function (DUF1707)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.0       1.6   2.9e+03      20      31 ..      44      55 ..      34      58 .. 0.84
   2 ?    5.0   0.1     0.015        26       5      38 ..     364     397 ..     363     400 .. 0.89
   3 ?    5.6   0.6    0.0092        17      19      49 ..     402     432 ..     390     435 .. 0.86

  Alignments for each domain:
  == domain 1  score: -1.6 bits;  conditional E-value: 1.6
     DUF1707 20 aeGrLtldEfde 31
                a G L+  Ef +
  KOO23284.1 44 ASGELDFREFSR 55
                679999999975 PP

  == domain 2  score: 5.0 bits;  conditional E-value: 0.015
     DUF1707   5 dadReravelLrealaeGrLtldEfdeRleaala 38 
                 d+dR+ ++ +L    a G L l E+ + ++    
  KOO23284.1 364 DTDRNGTISRLELRKALGELGLGEHPRAVDSLFD 397
                 89**********************9888877665 PP

  == domain 3  score: 5.6 bits;  conditional E-value: 0.0092
     DUF1707  19 laeGrLtldEfdeRleaalaArtrgeLaalv 49 
                    G +tldEf+  l+a l+A   ++L ++ 
  KOO23284.1 402 NRSGAITLDEFQLALQASLRAAQSEQLMDVS 432
                 567*******************999998875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (455 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       384  (0.0214178); expected 358.6 (0.02)
Passed bias filter:                      336  (0.0187406); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.48u 0.24s 00:00:00.72 Elapsed: 00:00:00.37
# Mc/sec: 3674.21
//
Query:       KOO23285.1  [L=367]
Description: transcriptional crp fnr family [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    8.5e-16   57.8   0.1      5e-08   32.9   0.1    4.1  4  cNMP_binding  Cyclic nucleotide-binding domain


Domain annotation for each model (and alignments):
>> cNMP_binding  Cyclic nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.0      0.37   6.7e+03      32      53 ..      39      59 ..      35      62 .. 0.70
   2 !   17.0   0.0   2.5e-07    0.0045       1      28 [.      74     101 ..      74     110 .. 0.93
   3 !    2.6   0.0    0.0082   1.5e+02      50      79 ..     163     191 ..     148     195 .. 0.87
   4 !   32.9   0.1   2.8e-12     5e-08       3      83 ..     253     342 ..     251     346 .. 0.80

  Alignments for each domain:
  == domain 1  score: -2.7 bits;  conditional E-value: 0.37
                  EEETTS.EEEEEEE-TTEEESH CS
  cNMP_binding 32 rlsedgkevvlavlgpGdlfGe 53
                  r++ + ++ +++ l++ dlf+ 
    KOO23285.1 39 RVAMETRR-IVDALKRSDLFAQ 59
                  45555555.9999999999976 PP

  == domain 2  score: 17.0 bits;  conditional E-value: 2.5e-07
                   EEEE-TT-EEE-TTSB-SEEEEEEES-E CS
  cNMP_binding   1 rrsfkagevifrqGdpadslyivlsGev 28 
                   rr +k+ +v++r+G pa+++y++++G++
    KOO23285.1  74 RRTYKRYDVLYREGAPAQCFYMLTRGTL 101
                   589***********************97 PP

  == domain 3  score: 2.6 bits;  conditional E-value: 0.0082
                   EESHHHHHHTS--SSEEEESSTEEEEEEEH CS
  cNMP_binding  50 lfGelalltgeprtatvvAltdsellalpr 79 
                   lfG   l++   r  t+ A++d+ +++++ 
    KOO23285.1 163 LFGLETLVG-RARESTLLAMSDVDVIRFNS 191
                   589988887.89*************99876 PP

  == domain 4  score: 32.9 bits;  conditional E-value: 2.8e-12
                   EE-TT-EEE-TTSB-SEEEEEEES-EEEEEEETTS..........EEEEEEE-TTEE..ESHHHHHHTS--SSEEEESSTEEEEEEEHHHHH CS
  cNMP_binding   3 sfkagevifrqGdpadslyivlsGevrvyrlsedg.........kevvlavlgpGdl..fGelalltgeprtatvvAltdsellalprddfl 83 
                   +++ g  if  G ++d++yi++ G+v +  + +dg         + +  + l p +l  fGe a+l+ + rt++++A+t ++ll+l +++f 
    KOO23285.1 253 EIEEGAQIFGLGYAPDKVYILMHGSVYL--RRRDGtrfaalsaeQGQSGRGLEPRELptFGETAMLDRKARTTSAIAVTACKLLVLHAEHFG 342
                   788999**********************..77777223333321112344668888777*******99******************999985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (367 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       319  (0.0177924); expected 358.6 (0.02)
Passed bias filter:                      266  (0.0148363); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.20s 00:00:00.64 Elapsed: 00:00:00.36
# Mc/sec: 3053.15
//
Query:       KOO23286.1  [L=446]
Description: hypothetical protein Ctob_000603 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (446 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       300  (0.0167327); expected 358.6 (0.02)
Passed bias filter:                      259  (0.0144459); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.44u 0.22s 00:00:00.66 Elapsed: 00:00:00.37
# Mc/sec: 3628.55
//
Query:       KOO23287.1  [L=506]
Description: dead (asp-glu-ala-asp) box polypeptide 56 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    9.5e-26   90.3   0.0    1.6e-25   89.6   0.0    1.4  1  Helicase_C  Helicase conserved C-terminal domain
    6.5e-10   39.1   0.0    1.1e-09   38.3   0.0    1.4  1  DEAD        DEAD/DEAH box helicase


Domain annotation for each model (and alignments):
>> Helicase_C  Helicase conserved C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   89.6   0.0   1.8e-29   1.6e-25       1     111 []     156     329 ..     156     329 .. 0.95

  Alignments for each domain:
  == domain 1  score: 89.6 bits;  conditional E-value: 1.8e-29
                 HHHHHHHHHHHHTTTTSEEEEEESSHH...HHHHHHHHHHHTTSTEEEESTTSTHHHHHHHHHHHHTTSSSEEEESGG..................... CS
  Helicase_C   1 dkleallellkleeeggkilifvntid...rlekvklllekkgikvavlhgelpqnereeileqfnkgesdvLiatdv..................... 75 
                 dk++ +++l+kl+++ g++lifvnt+d   rl   +l+le++g+++ vl+ elp  +r +++++fn+g +d+Liatd+                     
  KOO23287.1 156 DKFLVMYALFKLNRIPGRSLIFVNTVDrgfRL---RLFLEQFGVSAGVLNCELPLASRWHAIQAFNRGLFDILIATDDpklilgaaggggdgggggeee 251
                 68889999*******************76666...************************************************************9999 PP

                 ..........................................GTSSSTSTTESEEEESSSSSSHHHHHHHHTTSSSTT CS
  Helicase_C  76 ..........................................aerGidipkvnlVinfdlprnvtsyiqriGRtgRag 111
                                                           ++rG+d+++v+ V n+dlp++++ y +r+GRt+Rag
  KOO23287.1 252 egagstsergtaatgtaggkkrkrggaastgagasaadaefgVARGVDFTDVTAVLNMDLPTSLAVYRHRVGRTARAG 329
                 999999999999999999999999999999999999999999999*******************************97 PP

>> DEAD  DEAD/DEAH box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.3   0.0   1.3e-13   1.1e-09      89     174 ..      22     119 ..       3     121 .. 0.79

  Alignments for each domain:
  == domain 1  score: 38.3 bits;  conditional E-value: 1.3e-13
                 HHHHHHHTT..CSEEEEEHHHHHHHH..............HCTS..SH.CTTEEEEEEETHHHHHHTTTHHHHHHHHHHSHHHCTTSTTTSEEEEEESS CS
                 xxxxxxxxx..xxxxxxxxxxxxxxx..............xxxx..xx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD  89 dqlskldng..vdivvgtpgrlddll..............stgk..ln.lsqvrflVlDEadrlldqgfsdfinrilnqlpqitcdgklqrqvivlSAT 168
                 ++ s l+ +  +d +v+tp rl +l+              ++g+  l+  ++v++lV+DEad ll+ g++d+i +i ++l       +   q+++lSAT
  KOO23287.1  22 NDASSLSTDvpPDAIVATPARLRQLIdepggagaksssdgKRGSalLKlRESVQLLVVDEADLLLSYGYGDDIAAIGAAL-------PPAVQTLLLSAT 113
                 344455333459**********************9996663333435556789***************************.......55678******* PP

                 BSHHHH CS
                 xxxxxx RF
        DEAD 169 lpkdvk 174
                 ++ d++
  KOO23287.1 114 ITPDLD 119
                 *98876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (506 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       643  (0.0358637); expected 358.6 (0.02)
Passed bias filter:                      438  (0.0244297); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.53u 0.26s 00:00:00.79 Elapsed: 00:00:00.41
# Mc/sec: 3695.49
//
Query:       KOO23288.1  [L=351]
Description: hypothetical protein Ctob_000609 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.7e-06   27.1   0.1      0.013   15.0   0.0    3.1  2  EF-hand_1  EF hand
    0.00017   21.0   0.1       0.15   11.7   0.0    2.6  2  EF-hand_5  EF hand
    0.00034   20.3   0.2       0.62   10.2   0.0    3.0  2  EF-hand_6  EF-hand domain
      0.006   17.0   0.0      0.024   15.1   0.0    2.0  1  EF-hand_7  EF-hand domain pair
     0.0087   15.9   0.1      0.087   12.7   0.0    2.4  2  EF-hand_8  EF-hand domain pair
  ------ inclusion threshold ------
       0.04   14.0   0.6        0.1   12.7   0.4    1.8  2  LEH        Limonene-1,2-epoxide hydrolase catalytic domain


Domain annotation for each model (and alignments):
>> EF-hand_1  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.0   4.3e-06     0.013       5      25 ..     148     168 ..     145     172 .. 0.91
   2 !    8.7   0.0   0.00044       1.3      12      26 ..     190     204 ..     181     207 .. 0.91

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 4.3e-06
                 HHHHHTTTSSSEEEHHHHHHH CS
   EF-hand_1   5 iFrefDkDgdGkIdfeEfkel 25 
                  Fr++D D +G +d+ Ef++l
  KOO23288.1 148 TFRKMDADCSGAVDLGEFRHL 168
                 5******************97 PP

  == domain 2  score: 8.7 bits;  conditional E-value: 0.00044
                 TSSSEEEHHHHHHHH CS
   EF-hand_1  12 DgdGkIdfeEfkell 26 
                 + dGk+d++E+++ +
  KOO23288.1 190 NSDGKVDLNEWVQGM 204
                 88**********998 PP

>> EF-hand_5  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.7   0.0   4.9e-05      0.15       4      24 ..     148     168 ..     146     169 .. 0.93
   2 !    6.6   0.0    0.0019       5.7      11      23 ..     190     202 ..     189     205 .. 0.85

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 4.9e-05
                 HHHHH-SS-SSCE-HHHHHHH CS
   EF-hand_5   4 tFqaiDlNgDGkIskeELktl 24 
                 tF+++D++ +G ++  E++ l
  KOO23288.1 148 TFRKMDADCSGAVDLGEFRHL 168
                 7*****************976 PP

  == domain 2  score: 6.6 bits;  conditional E-value: 0.0019
                 S-SSCE-HHHHHH CS
   EF-hand_5  11 NgDGkIskeELkt 23 
                 N DGk++  E+ +
  KOO23288.1 190 NSDGKVDLNEWVQ 202
                 89********965 PP

>> EF-hand_6  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.2   0.0   0.00021      0.62       6      25 ..     149     168 ..     145     170 .. 0.92
   2 !    6.6   0.1    0.0028       8.2       6      26 ..     182     204 ..     181     208 .. 0.78

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.00021
   EF-hand_6   6 FklfDkdgdGkidaeElrka 25 
                 F+++D d +G +d  E+r++
  KOO23288.1 149 FRKMDADCSGAVDLGEFRHL 168
                 *****************985 PP

  == domain 2  score: 6.6 bits;  conditional E-value: 0.0028
   EF-hand_6   6 FklfDkd..gdGkidaeElrkal 26 
                 F l+D+    dGk+d +E+++ +
  KOO23288.1 182 FALLDQQgnSDGKVDLNEWVQGM 204
                 777777766899*******9976 PP

>> EF-hand_7  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.0   7.9e-06     0.024       3      69 ..     144     203 ..     142     205 .. 0.82

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 7.9e-06
   EF-hand_7   3 klkeaFkelDtdgdgyldkeellrllrkifqgagegsklsdeelellfkefDtdk..dGvisfdEFlkl 69 
                 +l   F+++D d +g +d  e+++l +       e++++ +     +f  +D+ +  dG+++++E ++ 
  KOO23288.1 144 QLTGTFRKMDADCSGAVDLGEFRHLAEG-----TEDNVVLP----GIFALLDQQGnsDGKVDLNEWVQG 203
                 56667******************99997.....77777777....899999997744799999997665 PP

>> EF-hand_8  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.7   0.0   2.9e-05     0.087      32      51 ..     149     168 ..     148     170 .. 0.90
   2 ?   -0.1   0.0      0.28   8.3e+02      39      51 ..     191     203 ..     182     206 .. 0.83

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 2.9e-05
   EF-hand_8  32 frefDtdgdGkisfeEFcvl 51 
                 fr++D d++G++++ EF  l
  KOO23288.1 149 FRKMDADCSGAVDLGEFRHL 168
                 9****************765 PP

  == domain 2  score: -0.1 bits;  conditional E-value: 0.28
   EF-hand_8  39 gdGkisfeEFcvl 51 
                  dGk++++E ++ 
  KOO23288.1 191 SDGKVDLNEWVQG 203
                 59******97765 PP

>> LEH  Limonene-1,2-epoxide hydrolase catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.4   3.4e-05       0.1      82     105 ..      96     119 ..      89     146 .. 0.78
   2 ?   -2.4   0.0       1.7     5e+03      62      98 ..     164     203 ..     136     211 .. 0.59

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 3.4e-05
                 EEEE..TTEEEEEEEEEEEEEETT CS
         LEH  82 rliladGplivqltvmGvfeVedg 105
                 + +++dG+  ++++v Gvf+Ve +
  KOO23288.1  96 AAEREDGTIKMDMWVLGVFKVERE 119
                 56789****************965 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 1.7
                 EEEEEEEEEETTEEE...EEEEEEEEE..TTEEEEEEEEE CS
         LEH  62 evkilriaadgsaVl...tERlDrliladGplivqltvmG 98 
                 e++ l+++++ + Vl      lD+    dG   ++ +v G
  KOO23288.1 164 EFRHLAEGTEDNVVLpgiFALLDQQGNSDGKVDLNEWVQG 203
                 6666666666666662212345666666666666666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (351 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       339  (0.0189079); expected 358.6 (0.02)
Passed bias filter:                      290  (0.0161749); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.46u 0.23s 00:00:00.69 Elapsed: 00:00:00.40
# Mc/sec: 2607.52
//
Query:       KOO23289.1  [L=367]
Description: protein arginine n-methyltransferase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    7.8e-11   41.9   0.0    1.2e-10   41.3   0.0    1.2  1  PrmA             Ribosomal protein L11 methyltransferase (Prm
      2e-09   38.0   0.0    6.4e-09   36.4   0.0    1.9  1  Methyltransf_25  Methyltransferase domain
    1.2e-07   32.3   0.0    2.8e-07   31.1   0.0    1.6  1  Methyltransf_11  Methyltransferase domain
    8.6e-07   28.7   0.0    1.6e-06   27.7   0.0    1.4  1  MTS              Methyltransferase small domain
    2.4e-06   27.0   0.3    6.8e-06   25.6   0.0    1.7  2  CMAS             Mycolic acid cyclopropane synthetase
    3.6e-06   26.8   0.0    5.5e-06   26.2   0.0    1.3  1  Methyltransf_31  Methyltransferase domain
    0.00012   21.9   0.0    0.00018   21.4   0.0    1.3  1  Methyltransf_23  Methyltransferase domain
    0.00019   21.4   0.0    0.00029   20.7   0.0    1.3  1  PRMT5            PRMT5 arginine-N-methyltransferase
    0.00026   20.8   0.1    0.00039   20.2   0.1    1.2  1  Met_10           Met-10+ like-protein
    0.00028   20.6   0.1    0.00047   19.8   0.1    1.4  1  Cons_hypoth95    Conserved hypothetical protein 95
    0.00043   20.2   0.0    0.00085   19.3   0.0    1.4  1  Methyltransf_18  Methyltransferase domain
    0.00046   20.9   0.0    0.00098   19.8   0.0    1.6  1  Methyltransf_12  Methyltransferase domain
    0.00093   18.7   0.0     0.0014   18.1   0.0    1.2  1  TehB             Tellurite resistance protein TehB
     0.0056   17.7   0.0      0.011   16.7   0.0    1.6  1  Methyltransf_24  Methyltransferase domain
     0.0082   15.9   0.2      0.013   15.3   0.2    1.2  1  PCMT             Protein-L-isoaspartate(D-aspartate) O-methyl
  ------ inclusion threshold ------
      0.014   14.8   0.0      0.021   14.2   0.0    1.3  1  Ubie_methyltran  ubiE/COQ5 methyltransferase family
      0.028   14.3   0.0      0.069   13.0   0.0    1.4  1  PRMT5_C          PRMT5 oligomerisation domain
      0.042   12.8   0.0      0.081   11.8   0.0    1.4  1  Methyltransf_9   Protein of unknown function (DUF1698)
      0.063   12.5   0.0        8.1    5.6   0.0    2.1  2  NNMT_PNMT_TEMT   NNMT/PNMT/TEMT family
       0.11   12.2   0.1       0.35   10.5   0.0    1.7  2  GCD14            tRNA methyltransferase complex GCD14 subunit


Domain annotation for each model (and alignments):
>> PrmA  Ribosomal protein L11 methyltransferase (PrmA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.3   0.0   1.3e-13   1.2e-10     161     233 ..      56     129 ..      47     158 .. 0.82

  Alignments for each domain:
  == domain 1  score: 41.3 bits;  conditional E-value: 1.3e-13
        PrmA 161 egeevlDvGtGSGiLaiaaakLgakkvvavDiDevAvkvakeNaelNkveaklev...alseellkeekadvivaN 233
                 eg+ vlDvG+GSG+L+i aa+ gak+v+av   ++A + a++ +++N+v++ + v   +++++ l  ek+d+iv+ 
  KOO23289.1  56 EGKVVLDVGAGSGVLSIWAAMAGAKRVYAVEATSMA-QHARRLVQQNGVQDVVVVlegYMEAQEL-PEKVDLIVSE 129
                 5789*******************************9.779999********88663332333333.369*****86 PP

>> Methyltransf_25  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.4   0.0   7.2e-12   6.4e-09       1      97 []      60     156 ..      60     156 .. 0.87

  Alignments for each domain:
  == domain 1  score: 36.4 bits;  conditional E-value: 7.2e-12
                      EEEET-TTSHHHHHHHCTSTSSEEEEEESSHHHHHHHHHHHHHTTT..TEEEEESBCCGBSSSTTTEEEEEEEST.GGGSSHHHHHHHHHHHHH CS
  Methyltransf_25   1 vLdlGcGtGrltlalakrlgkakvtgvDiseemleaareraeeegl..nvefvqgdaedlpfedgsfDlvvssga.lhhlsdedlekalkeiar 91 
                      vLd+G+G+G l++++a + g+++v++v+ + +m ++ar+ ++++g+   v +++g +e+ +++ +++Dl+vs  + + +l ++ ++ +l+   +
       KOO23289.1  60 VLDVGAGSGVLSIWAAMA-GAKRVYAVEAT-SMAQHARRLVQQNGVqdVVVVLEGYMEAQELP-EKVDLIVSEWMgYFLLREAMYDSVLAARDK 150
                      9***************99.69*******75.899************95555566666666655.5*******766688899999********** PP

                      HEEEEE CS
  Methyltransf_25  92 vLkpgG 97 
                      +LkpgG
       KOO23289.1 151 WLKPGG 156
                      *****9 PP

>> Methyltransf_11  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.1   0.0   3.2e-10   2.8e-07       1      94 [.      61     158 ..      61     159 .. 0.92

  Alignments for each domain:
  == domain 1  score: 31.1 bits;  conditional E-value: 3.2e-10
                      EEET-TTSHHHHHHHHTT.SEEEEEES-HHHHHHHHHHCCHHT-..EEEETTEECCCTSS-TT-EEEEEEES-CCC-...CCHHHHHHHHHHHE CS
  Methyltransf_11   1 LdvGcGtGrlaealakrg.arvvgvDlskemlklakekaseegl..kvefvvadaeklpfednsfDlvvssevlhhv...edpekalkeiaRvL 88 
                      LdvG+G+G l+ + a +g +rv++v+ ++ m + a++ ++++g+   v ++++ +e   +++ ++Dl+vs ++  ++   +  +++l+   ++L
       KOO23289.1  61 LDVGAGSGVLSIWAAMAGaKRVYAVE-ATSMAQHARRLVQQNGVqdVVVVLEGYMEAQELPE-KVDLIVSEWMGYFLlreAMYDSVLAARDKWL 152
                      8**************9999*******.899999**999999999987888999999888888.*********999998888999********** PP

                      EEEEEE CS
  Methyltransf_11  89 kpgGll 94 
                      kpgG +
       KOO23289.1 153 KPGGAM 158
                      ****86 PP

>> MTS  Methyltransferase small domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.7   0.0   1.8e-09   1.6e-06      31     103 ..      56     128 ..      45     160 .. 0.80

  Alignments for each domain:
  == domain 1  score: 27.7 bits;  conditional E-value: 1.8e-09
                 TCSEEEEET-TTSHHHHHHHHHTTC.EEEEEESBHHHHHHHHHHHHHTTGC.EEEEE-STTTTST.TS-EEEEEE CS
         MTS  31 lsgkvlDlGcGaGvlgaalakespeaevtlvdvdarAlesakenleankle.vevvasdvleeve.ekkfdlivs 103
                 + + vlD+G+G Gvl++++a +  + +v +v++  +A + a++ +++n+++ v vv +  +e+ e ++k+dlivs
  KOO23289.1  56 EGKVVLDVGAGSGVLSIWAAMAGAK-RVYAVEATSMA-QHARRLVQQNGVQdVVVVLEGYMEAQElPEKVDLIVS 128
                 45669*************9998887.8*******999.7799999*****96444444444444458******98 PP

>> CMAS  Mycolic acid cyclopropane synthetase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.6   0.0   7.6e-09   6.8e-06      51     163 ..      45     159 ..      20     172 .. 0.78
   2 ?   -1.4   0.1       1.3   1.1e+03      73     108 ..     189     226 ..     187     235 .. 0.80

  Alignments for each domain:
  == domain 1  score: 25.6 bits;  conditional E-value: 7.6e-09
                 HHHHHTTTT--TT-EEEEES-TTSHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHTS-SSS-EEEEES-G...GG-----SEEEEES-GGGT.SGGGH CS
        CMAS  51 ldlileklelkpGmtlLdiGcGWGslvrraverydvkvvglTlSkeqaklakkrvdeldlerkvevklldy...edldekvdrvvsvgafehv.gkeny 145
                 ++ il+ ++  +G+ +Ld+G+G G l + a+   ++k v     +  a++a++ v++ ++++ v v l +y   ++l+ekvd +vs  +   +  ++ y
  KOO23289.1  45 RNAILQNASCFEGKVVLDVGAGSGVLSIWAAMA-GAKRVYAVEATSMAQHARRLVQQNGVQDVV-VVLEGYmeaQELPEKVDLIVSEWMGYFLlREAMY 141
                 56788999999********************99.7777777777888999*********88866.55666722256667*******6554433378899 PP

                 HHHHHHHHHHS-TT-EEE CS
        CMAS 146 dtffkklkkllkedGlll 163
                 d   ++ +k lk++G + 
  KOO23289.1 142 DSVLAARDKWLKPGGAMY 159
                 99999999****999985 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 1.3
                 TSHHHHHHHHHH--EEEEEE..S-HHHHHHHHHHHHTS CS
        CMAS  73 WGslvrraverydvkvvglT..lSkeqaklakkrvdel 108
                 WG+    + +  +++v glT  + +eq+++  ++ +  
  KOO23289.1 189 WGEFSSWMLDGNGINVNGLTgfFAREQQEYLLQSAQWC 226
                 9999999999999*****99777899998877766655 PP

>> Methyltransf_31  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.2   0.0   6.2e-09   5.5e-06       4     121 ..      57     185 ..      55     232 .. 0.75

  Alignments for each domain:
  == domain 1  score: 26.2 bits;  conditional E-value: 6.2e-09
  Methyltransf_31   4 glrvlDlGCGtGeltfelaeelgpkaevvGiDiseeaielArenaqklgld.nveFeqgdieeleklledekfDlilsn...evlnaladpdki 93 
                      g++vlD+G+G+G l++ +a  +   ++v+ ++ +    ++Ar   q++g++  v + +g +e+ e  l  ek+Dli+s     +l   a  d++
       KOO23289.1  57 GKVVLDVGAGSGVLSIWAA--MAGAKRVYAVEATSM-AQHARRLVQQNGVQdVVVVLEGYMEAQE--LP-EKVDLIVSEwmgYFLLREAMYDSV 144
                      789*************999..566788*****9865.5*************55566667777755..45.99******9777666777778888 PP

  Methyltransf_31  94 leeiervlkpggilliedpr.............llaelpak 121
                      l    + lkpgg++  +++               lae++++
       KOO23289.1 145 LAARDKWLKPGGAMYPSHAFlrmaplcsalygsRLAEFDEE 185
                      88888999999998866555555555555555555555555 PP

>> Methyltransf_23  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.4   0.0     2e-07   0.00018      11     116 ..      43     159 ..      32     228 .. 0.79

  Alignments for each domain:
  == domain 1  score: 21.4 bits;  conditional E-value: 2e-07
  Methyltransf_23  11 dklerllpk..lraggrvLdiGcGtGillevlrengf.svtgvDlspeaveiae.......kakkaqkdqfdeqeaaepqgkfdlIvlrevleh 94 
                      + ++ +l++   ++g+ vLd+G+G+G l+  ++  g+  v++v++ ++a++ ++       ++   + + +  +ea+e  +k dlIv+  + + 
       KOO23289.1  43 AYRNAILQNasCFEGKVVLDVGAGSGVLSIWAAMAGAkRVYAVEATSMAQHARRlvqqngvQDVVVVLEGY--MEAQELPEKVDLIVSEWMGYF 134
                      444455544448********************999997899****99888876677666555555555555..69999999****999765555 PP

  Methyltransf_23  95 vpd...ppellrqiatllkpgGyll 116
                      +     + ++l+   ++lkpgG ++
       KOO23289.1 135 LLReamYDSVLAARDKWLKPGGAMY 159
                      5522447789999999999998775 PP

>> PRMT5  PRMT5 arginine-N-methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.7   0.0   3.2e-07   0.00029      65     151 ..      57     136 ..       9     157 .. 0.80

  Alignments for each domain:
  == domain 1  score: 20.7 bits;  conditional E-value: 3.2e-07
                 EEEEEEES-TTSHHHHHHHHHHHHHCCCEEEEEEEES-HHHHHHHHHHHHHHTTCCGCEEEES-CCCCCHCC-ECEEEE---BTTBC CS
       PRMT5  65 klvilvvGaGRGplvdralkaleetkvtkvkivavEKnpnavvtLqkkvneekWeekveviksdmrelkaeekvdllvsELLGSfgd 151
                   v+l vGaG G l   +  a++ +k    +++avE  + a  + ++ v+++  ++ v v++  m + + +ekvdl+vsE +G f  
  KOO23289.1  57 GKVVLDVGAGSGVLS--IWAAMAGAK----RVYAVEATSMAQHA-RRLVQQNGVQDVVVVLEGYMEAQELPEKVDLIVSEWMGYFLL 136
                 457788999999774..555666666....89****99988766.467799999999**************************9965 PP

>> Met_10  Met-10+ like-protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.2   0.1   4.3e-07   0.00039      98     170 ..      54     124 ..      36     147 .. 0.80

  Alignments for each domain:
  == domain 1  score: 20.2 bits;  conditional E-value: 4.3e-07
                 --TT-EEEETT-TTTCCHHHCCHHTTSSEEEEEES-HHHHHHHHHHHHHTT-TTCEEEEES-GGG---TT-EE CS
      Met_10  98 veegevVvdvfAGiGpfaipiakyskakrvlaidlnPesvkylkeniklNkvekvvkpileDgrevireqlad 170
                 + eg+vV+dv AG G ++i +a  + akrv+a++    + +  ++ ++ N v++vv ++++  +    ++++d
  KOO23289.1  54 CFEGKVVLDVGAGSGVLSIWAAM-AGAKRVYAVEATSMA-QHARRLVQQNGVQDVVVVLEGYMEAQELPEKVD 124
                 4589******************7.89999*****98776.557889999*****9988876555444455555 PP

>> Cons_hypoth95  Conserved hypothetical protein 95
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.8   0.1   5.3e-07   0.00047      35      79 ..      48      94 ..      36     127 .. 0.78

  Alignments for each domain:
  == domain 1  score: 19.8 bits;  conditional E-value: 5.3e-07
                   HHCCC..HCC-EEEETT-TTSHHHHHHHHTT-SEEEEEES-HHHHHH CS
  Cons_hypoth95 35 ilaae..iegarvLDlfaGsGalglEAlSRgakkavlvekdkeavki 79
                   il+++  +eg+ vLD+ aGsG+l++ A+  gak++++ve  + a+++
     KOO23289.1 48 ILQNAscFEGKVVLDVGAGSGVLSIWAAMAGAKRVYAVEATSMAQHA 94
                   4555577999*****************************98776543 PP

>> Methyltransf_18  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.3   0.0   9.4e-07   0.00085      14      98 ..      56     138 ..      46     152 .. 0.80

  Alignments for each domain:
  == domain 1  score: 19.3 bits;  conditional E-value: 9.4e-07
  Methyltransf_18  14 kgsrvaDiGtDHgylpiylvkegkakkviasDinegplekakeniekagledkievrlsdGleklk.eeevdtvviaGmGgelile 98 
                      +g++v+D+G+  g+l+i+++  g ak+v+a++   +  ++a++ ++++g++d + v+l   +e+ + +e+vd +v   mG  l +e
       KOO23289.1  56 EGKVVLDVGAGSGVLSIWAAMAG-AKRVYAVEAT-SMAQHARRLVQQNGVQD-VVVVLEGYMEAQElPEKVDLIVSEWMGYFLLRE 138
                      5899***************9765.78******86.5679***********87.55556555666665777*****99999877766 PP

>> Methyltransf_12  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.8   0.0   1.1e-06   0.00098       1      98 [.      61     157 ..      61     158 .. 0.73

  Alignments for each domain:
  == domain 1  score: 19.8 bits;  conditional E-value: 1.1e-06
  Methyltransf_12   1 LeiGcGtGsllralleklpdieytgvDispsaiedakeklakrennnnnnvelealdlldldggssfDlvv...asnvlhhlkdirevldnirk 91 
                      L++G+G+G l+   + +   +++++v+  + a   ++++l ++++ +  +v le    +++  ++++Dl+v   +  +l   +  ++vl+   k
       KOO23289.1  61 LDVGAGSGVLSIWAAMA-GAKRVYAVEATSMAQ--HARRLVQQNGVQDVVVVLEGYMEAQE-LPEKVDLIVsewMGYFLLREAMYDSVLAARDK 150
                      8***************9.888888999776666..55566666655555555555554444.445*****95555555555488889999999* PP

  Methyltransf_12  92 lLkpgGr 98 
                      +LkpgG 
       KOO23289.1 151 WLKPGGA 157
                      *****95 PP

>> TehB  Tellurite resistance protein TehB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.1   0.0   1.5e-06    0.0014       4     128 ..      30     156 ..      27     163 .. 0.79

  Alignments for each domain:
  == domain 1  score: 18.1 bits;  conditional E-value: 1.5e-06
                 CGCCHHHHHHT-----HHHHHHCCCS-S-EEEEES-TTSHHHHHHHHTT-E.EEEEES-HHHHHHHHHHHHHTT-TTEEEEE--.GGG----S-EEEEE CS
        TehB   4 kkedyfskkynltathsevveavkivkpgkvldlgcgqgrnslylsllgyd.vtawdknensiafleeikekenlknistalyd.ineaklderydfil 100
                 +++d  +++  +ta  + +++ +   +   vld+g g+g  s++ ++ g + v a++  +++ ++ +++ +++ ++++   l   +++ +l e+ d+i+
  KOO23289.1  30 HQKDMLQDRGRMTAYRNAILQNASCFEGKVVLDVGAGSGVLSIWAAMAGAKrVYAVEATSMA-QHARRLVQQNGVQDVVVVLEGyMEAQELPEKVDLIV 127
                 6789999*********************99******************97536666655444.445666677777777666654267789********* PP

                 EESSGGGS-GGGH.HHHHHHHHHTEEEEE CS
        TehB 101 stvvlmfleaeri.psiienmqectkvgg 128
                 s  +  fl +e++  s+++  ++  k+gg
  KOO23289.1 128 SEWMGYFLLREAMyDSVLAARDKWLKPGG 156
                 *9998888777652567777788888887 PP

>> Methyltransf_24  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.0   1.2e-05     0.011       2      75 ..      62     128 ..      61     159 .. 0.78

  Alignments for each domain:
  == domain 1  score: 16.7 bits;  conditional E-value: 1.2e-05
  Methyltransf_24   2 EiGvysGvstlwllralrrngagrlvavdhdpgaeeaaalareaglddrvrlikadseealaslaagsiDllfi 75 
                       +G+ sGv ++w + a    ga r++av+   +a++a++l++++g++d+v ++++ +e++  +l  +++Dl++ 
       KOO23289.1  62 DVGAGSGVLSIWAAMA----GAKRVYAVEATSMAQHARRLVQQNGVQDVVVVLEGYMEAQ--ELP-EKVDLIVS 128
                      5787799999998843....44589*****9999*********************99877..788.88888875 PP

>> PCMT  Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.2   1.4e-05     0.013      71     130 ..      54     110 ..      32     119 .. 0.81

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 1.4e-05
                 --TT-EEEEES-TTSHHHHHHHHHHCTTCEEEEEESBHHHHHHHHHHHHHCTTCSEEEEE CS
        PCMT  71 lkkgarvLevGsGsGyltavlarlvgekgrvvsierikelveeakrnlkkldlenvivvv 130
                   +g+ vL+vG+GsG l+ + a + g+k  v ++e   +++++a+r ++++++++v+vv 
  KOO23289.1  54 CFEGKVVLDVGAGSGVLS-IWAAMAGAKR-VYAVEA-TSMAQHARRLVQQNGVQDVVVVL 110
                 557899*********996.6788889886.899996.6899*************998864 PP

>> Ubie_methyltran  ubiE/COQ5 methyltransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   0.0   2.3e-05     0.021      34     150 ..      43     159 ..      20     175 .. 0.81

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 2.3e-05
                      HHHHHHHHH--S--TTEEEEES-TT-HHHHHHHHHHHHHHEEEEEES-HHHHHHHHHHHHHHTSSTEEEEE-...-TTT-TTS-T-EEEEEEES CS
  Ubie_methyltran  34 lWkkfveklvavkrgakvlDvagGtgDlafklsdsvgekgkvvvlDinenmLkvgekklkeegkinieflqa...naeeLpfeddsfDvvtvsf 124
                       +++ + +  +  +g+ vlDv +G+g l++  +  +    +v  ++   +m + +++ ++++g++++  +     +a+eLp++ d   +  +++
       KOO23289.1  43 AYRNAILQNASCFEGKVVLDVGAGSGVLSIWAA--MAGAKRVYAVE-ATSMAQHARRLVQQNGVQDVVVVLEgymEAQELPEKVDLIVSEWMGY 133
                      56777888888899************9887544..33334566665.56899*************98887641336778888888888888999 PP

                      -GGG-S-HHHHHHHHHHHEEEEEEEE CS
  Ubie_methyltran 125 GlrnvtDklkaLkeayrvlkpGGrlv 150
                       l   + ++ +L    + lkpGG+++
       KOO23289.1 134 FLLREAMYDSVLAARDKWLKPGGAMY 159
                      9999999****************987 PP

>> PRMT5_C  PRMT5 oligomerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.0   7.7e-05     0.069      25     140 ..     215     338 ..     211     351 .. 0.74

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 7.7e-05
                 CS-EEEB--S-EESSS.....S-EEEEEEESS-TTSS.-S-EEEEEEEEE-SSEEEEEEEEEEEEEEETT.EEEE-SCCC...--TT-TS---EEEEEE CS
     PRMT5_C  25 etpyvvklvkvdklse.....kvkevweFehpneekeeenersktlefkikekaeihGlagyFeavLYkd.velSilPetkeaktkdliSWfpiffPlk 117
                 ++ y ++  + ++l +        +v eF+  +++++e  + s++ +  i+e+a ++++ g+F++ + +   e + +P t ++  +  + W   +f ++
  KOO23289.1 215 QQEYLLQSAQWCQLRQsevigDEFSVSEFDLHTTTTKELASFSTSFRSVISEDALLNAFGGWFDTDFNGSaAEPAPKPVTLTTAPESATHWAQQVFLVH 313
                 56788888888888875555544566677766666666777777788889****************999434555566665555556888999999999 PP

                 EEEEE-TTEEEE..EEEEEEEESSE CS
     PRMT5_C 118 kpllvkddsele..vslwRktdekk 140
                  pllv+ +++le  v++ R++ +++
  KOO23289.1 314 PPLLVEVGDTLEgiVKVARQKLNHR 338
                 9999998888875578888887655 PP

>> Methyltransf_9  Protein of unknown function (DUF1698)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0     9e-05     0.081     108     213 ..      49     156 ..      40     160 .. 0.73

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 9e-05
                     GGGS.--TT-EEEEET-TTSHHHHHHHHCT-SEEEEE---HHHHHHHHHHHCCTTTTSSEEEE---GGGS-T---EEEEEE..ES-GGG-S-HHH CS
  Methyltransf_9 108 lphlsdlkgrtildvGcgnGyhlwrmvgegaklvvGidPselfliqfeavrkllgedqrahllplgieqlpeleafdtvfs..mGvlyhrrsPld 200
                     l+  s ++g+++ldvG g+G      + +gak v  ++ +++     + v++    +  +++l   +e  +  e  d + s  mG +  r++  d
      KOO23289.1  49 LQNASCFEGKVVLDVGAGSGVLSIWAAMAGAKRVYAVEATSMAQHARRLVQQNG-VQDVVVVLEGYMEAQELPEKVDLIVSewMGYFLLREAMYD 142
                     56677889************9988888899********9998877766666644.4444555544455444456677666555999999999999 PP

                     HHHHHHCT.EEEEE CS
  Methyltransf_9 201 hllqlkdq.lvkgG 213
                      +l+ +d+ l+ gG
      KOO23289.1 143 SVLAARDKwLKPGG 156
                     99998887344455 PP

>> NNMT_PNMT_TEMT  NNMT/PNMT/TEMT family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.6   0.0     0.009       8.1      26      83 ..      27      83 ..      14      91 .. 0.69
   2 ?    5.1   0.0     0.012        11     125     195 ..      88     158 ..      84     166 .. 0.84

  Alignments for each domain:
  == domain 1  score: 5.6 bits;  conditional E-value: 0.009
                    CSTTTTSTCCCCHHHHHHHH.HHHHHHTSSS-ECEEEEET-TT--GGGTTGGGTECEEE CS
  NNMT_PNMT_TEMT 26 ykkasedaaeeqvvlfaLkn.llqtlatgekkgdtllDiGaGPTvyqllsarevakeit 83
                    y  +++d+ ++    +a +n +lq  +    +g+++lD+GaG  v ++ +a   ak+++
      KOO23289.1 27 YLYHQKDMLQDRGRMTAYRNaILQNAS--CFEGKVVLDVGAGSGVLSIWAAMAGAKRVY 83
                    445555665444333344433555444..45679**************99999999987 PP

  == domain 2  score: 5.1 bits;  conditional E-value: 0.012
                     HHHHHHHHHHEEE..EEE--TTSSSTTTTSS-SS..EEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEEEEE CS
  NNMT_PNMT_TEMT 125 qekeeklRklvkr..vlkvdvhqspvvlagvqlpkkadvvvtifcleaacedleeylralrnlasllkpGGhl 195
                       +++++R+lv++  v +v v  +  + a ++lp+k+d +v+   + +     + y   l    + lkpGG +
      KOO23289.1  88 TSMAQHARRLVQQngVQDVVVVLEGYMEA-QELPEKVDLIVSEW-MGYFLLREAMYDSVLAARDKWLKPGGAM 158
                     5688999****999999999999999999.7**********986.6777777778888888888888888875 PP

>> GCD14  tRNA methyltransferase complex GCD14 subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.0    0.0004      0.35      32      98 ..      48     111 ..      42     128 .. 0.83
   2 ?   -1.3   0.0       1.6   1.4e+03     159     187 ..     220     248 ..     214     262 .. 0.82

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.0004
       GCD14  32 iimkLelkpGsvvvesGtGsgslshaiartvaPtGhlftfefheqraekareefrehelsqlvtvth 98 
                 i ++    +G vv++ G+Gsg ls  i  ++a   +++++e   + a++ar   ++++++++v v +
  KOO23289.1  48 ILQNASCFEGKVVLDVGAGSGVLS--IWAAMAGAKRVYAVEA-TSMAQHARRLVQQNGVQDVVVVLE 111
                 566667789**************8..788999*********6.567999**********99888754 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 1.6
       GCD14 159 Lrelgfteietlevllrtyevrkskleei 187
                 L++ ++++++  ev   +++v + +l+++
  KOO23289.1 220 LQSAQWCQLRQSEVIGDEFSVSEFDLHTT 248
                 78899*********999999998888765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (367 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       435  (0.0242624); expected 358.6 (0.02)
Passed bias filter:                      398  (0.0221987); expected 358.6 (0.02)
Passed Vit filter:                        57  (0.00317921); expected 17.9 (0.001)
Passed Fwd filter:                        20  (0.00111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              20  [number of targets reported over threshold]
# CPU time: 0.50u 0.29s 00:00:00.79 Elapsed: 00:00:00.44
# Mc/sec: 2520.18
//
Query:       KOO23290.1  [L=566]
Description: hypothetical protein Ctob_000605 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.3e-25   89.6   3.2    3.4e-06   27.3   0.2    4.3  4  PDZ       PDZ domain
      1e-19   70.1   6.2    4.6e-05   23.2   0.0    4.5  4  PDZ_6     PDZ domain
    1.2e-07   32.0   1.8       0.21   11.9   0.0    4.4  4  PDZ_2     PDZ domain
    0.00043   20.0  11.5      0.063   13.2   2.3    2.7  2  UIM       Ubiquitin interaction motif
  ------ inclusion threshold ------
        6.1    7.2   7.2        3.7    7.9   2.4    2.6  2  EccE      Putative type VII ESX secretion system translocon, 


Domain annotation for each model (and alignments):
>> PDZ  PDZ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.5   0.0   2.6e-07   0.00093      17      81 ..      41     100 ..      25     101 .. 0.80
   2 !   17.7   0.1   9.7e-07    0.0035       9      78 ..     122     186 ..     115     191 .. 0.87
   3 !   27.3   0.2   9.6e-10   3.4e-06       8      81 ..     229     300 ..     222     301 .. 0.90
   4 !   22.8   0.0   2.4e-08   8.8e-05       8      80 ..     489     558 ..     483     560 .. 0.90

  Alignments for each domain:
  == domain 1  score: 19.5 bits;  conditional E-value: 2.6e-07
                 EEETTSSSSSSEEEEEECTTSHHHHHTSSTTEEEEEETTEETTTSHHHHHHHHHHTTTSEEEEEE CS
         PDZ  17 kggsdqrgdkgifvsevlpggaaeadglkvGDkIlsvNgvdvenvsheeavqaikgskgkvtLti 81 
                  +     +++g  v  vlp + ae++g+ vG  Il vNg+ v+++  e++  +i+    ++t+++
  KOO23290.1  41 GE-----HEQGTAVIGVLPSSLAEQQGVPVGGLILTVNGEEVVGLPPEAVEVLIETEQWPITINV 100
                 33.....4579**********************************98887777765544666655 PP

  == domain 2  score: 17.7 bits;  conditional E-value: 9.7e-07
                 TSESSEEEEEETTSSSSSSEEEEEECTTSHHHHHTSSTTEEEEEETTEETTTSHHHHHHHHHHTTTSEEE CS
         PDZ   9 rgglGfslkggsdqrgdkgifvsevlpggaaeadglkvGDkIlsvNgvdvenvsheeavqaikgskgkvt 78 
                  g lG+ l+ +       g fv +v+ g+  ++ g+ vG  +l+vN+++v ++    ++++i ++  +++
  KOO23290.1 122 SGLLGIALVTNAG-----GTFVGRVSGGSLSDTLGVPVGALVLEVNDENVMELDSQMVQAMIVSAPRPIK 186
                 6789999998777.....9*********7777777*****************************998554 PP

  == domain 3  score: 27.3 bits;  conditional E-value: 9.6e-10
                 TTSESSEEEEEETTSSSSSSEEEEEECTTSHHHHHTSSTTEEEEEETTEETTTSHHHHHHHHHHTTTS..EEEEEE CS
         PDZ   8 grgglGfslkggsdqrgdkgifvsevlpggaaeadglkvGDkIlsvNgvdvenvsheeavqaikgskg..kvtLti 81 
                 g+g lG+ l          g+ v+ v +g++a+a+ +  G  I+++N +dv+ + +  +++++k++    +++L+i
  KOO23290.1 229 GQGHLGLVLGDSPMG----GVRVNGVAAGSMADAQMVPDGALIIGINEEDVRAHDKQIVQAMLKSAPRpfTLHLEI 300
                 788999999987764....****************9*******************************999999987 PP

  == domain 4  score: 22.8 bits;  conditional E-value: 2.4e-08
                 TTSESSEEEEEETTSSSSSSEEEEEECTTSHHHHHTSSTTEEEEEETTEETTTSHHHHHHHHHHTTTSEEEEE CS
         PDZ   8 grgglGfslkggsdqrgdkgifvsevlpggaaeadglkvGDkIlsvNgvdvenvsheeavqaikgskgkvtLt 80 
                 ++g+lG+ l+   +    +g +v+ v p + a+a g+++G ++l+ Ng++++++  e a+ +i  ++ ++tL+
  KOO23290.1 489 EKGSLGLVLVNHPER---PGTIVKLVTPASVAAAHGVEPGSELLELNGENMRGLDFEMAMVLIGTAGRPLTLL 558
                 679999999987776...7**********9999999**************************99999999997 PP

>> PDZ_6  PDZ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   0.3     1e-06    0.0036       2      51 ..      49      97 ..      49     102 .. 0.74
   2 !   18.1   0.1   5.1e-07    0.0018       1      52 [.     137     187 ..     137     190 .. 0.83
   3 !   11.7   0.1   4.8e-05      0.17       1      52 [.     246     296 ..     246     299 .. 0.87
   4 !   23.2   0.0   1.3e-08   4.6e-05       1      53 [.     507     558 ..     507     560 .. 0.92

  Alignments for each domain:
  == domain 1  score: 17.1 bits;  conditional E-value: 1e-06
       PDZ_6  2 VtaVdpgsPAdrAGlrvGDiilsvNGqpveglsladvaallrgsagesvv 51
                V  V p s A++ G+ vG +il vNG++v gl ++ v  l++  +  +++
  KOO23290.1 49 VIGVLPSSLAEQQGVPVGGLILTVNGEEVVGLPPEAVEVLIE-TEQWPIT 97
                56899***********************96665555544443.5555555 PP

  == domain 2  score: 18.1 bits;  conditional E-value: 5.1e-07
       PDZ_6   1 vVtaVdpgsPAdrAGlrvGDiilsvNGqpveglsla.dvaallrgsagesvvl 52 
                 +V  V  gs  d+ G+ vG ++l+vN+++v  + l+ + ++++  sa++++ +
  KOO23290.1 137 FVGRVSGGSLSDTLGVPVGALVLEVNDENV--MELDsQMVQAMIVSAPRPIKI 187
                 6899**************************..777766666666677777665 PP

  == domain 3  score: 11.7 bits;  conditional E-value: 4.8e-05
       PDZ_6   1 vVtaVdpgsPAdrAGlrvGDiilsvNGqpveglsladvaallrgsagesvvl 52 
                 +V  V +gs Ad   +  G +i+ +N ++v+ ++ + v+a+l+ sa+++ +l
  KOO23290.1 246 RVNGVAAGSMADAQMVPDGALIIGINEEDVRAHDKQIVQAMLK-SAPRPFTL 296
                 6899********766***************9999999999999.88877776 PP

  == domain 4  score: 23.2 bits;  conditional E-value: 1.3e-08
       PDZ_6   1 vVtaVdpgsPAdrAGlrvGDiilsvNGqpveglsla.dvaallrgsagesvvlv 53 
                 +V+ V p s+A+  G+++G  +l++NG++   + l+ + a  l g ag++++l+
  KOO23290.1 507 IVKLVTPASVAAAHGVEPGSELLELNGENM--RGLDfEMAMVLIGTAGRPLTLL 558
                 5999**************************..8888889999999999999986 PP

>> PDZ_2  PDZ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.7   0.0   0.00059       2.1       9      46 ..      42      77 ..      24      93 .. 0.86
   2 ?    3.5   0.2     0.024        87       2      50 ..     124     170 ..     123     182 .. 0.87
   3 ?    3.6   0.0     0.024        85       5      52 ..     235     283 ..     231     301 .. 0.75
   4 !   11.9   0.0     6e-05      0.21       3      47 ..     493     537 ..     491     557 .. 0.81

  Alignments for each domain:
  == domain 1  score: 8.7 bits;  conditional E-value: 0.00059
                ----..-EEEEEE-TTSGGGGT.--TT-EEEEETTB-- CS
       PDZ_2  9 deedtggvlvvsVkeggPaakaglkagDvilkvdgkkv 46
                ++e  +g  v+ V +++ a+++g+  g  il v+g +v
  KOO23290.1 42 EHE--QGTAVIGVLPSSLAEQQGVPVGGLILTVNGEEV 77
                444..5999**************************998 PP

  == domain 2  score: 3.5 bits;  conditional E-value: 0.024
                 ...XX------..-EEEEEE-TTSGGGGT.--TT-EEEEETTB--SSHH CS
       PDZ_2   2 ylGvsvsdeedtggvlvvsVkeggPaakaglkagDvilkvdgkkvksle 50 
                  lG+ ++ + +  g  v  V  g+ ++  g+  g  +l+v++  v +l+
  KOO23290.1 124 LLGIALVTNAG--GTFVGRVSGGSLSDTLGVPVGALVLEVNDENVMELD 170
                 58999998888..99****************************996655 PP

  == domain 3  score: 3.6 bits;  conditional E-value: 0.024
                 XX------..-EEEEEE-TTSGGGGT.--TT-EEEEETTB--..SSHHHH CS
       PDZ_2   5 vsvsdeedtggvlvvsVkeggPaakaglkagDvilkvdgkkv..ksledl 52 
                   + d+   ggv v  V  g+ a+++ +  g  i+ +++ +v  ++ + +
  KOO23290.1 235 LVLGDSP-MGGVRVNGVAAGSMADAQMVPDGALIIGINEEDVraHDKQIV 283
                 5555554.59*****************************99953443333 PP

  == domain 4  score: 11.9 bits;  conditional E-value: 6e-05
                 ..XX------..-EEEEEE-TTSGGGGT.--TT-EEEEETTB--S CS
       PDZ_2   3 lGvsvsdeedtggvlvvsVkeggPaakaglkagDvilkvdgkkvk 47 
                 lG  ++++ +  g +v  V++++ aa++g+++g ++l+++g  + 
  KOO23290.1 493 LGLVLVNHPERPGTIVKLVTPASVAAAHGVEPGSELLELNGENMR 537
                 777777766666999999***********************9874 PP

>> UIM  Ubiquitin interaction motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.2   2.3   1.8e-05     0.063       1      13 [.     401     413 ..     401     416 .. 0.94
   2 !   11.1   2.0   8.2e-05      0.29       1      13 [.     447     459 ..     447     459 .. 0.96

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 1.8e-05
         UIM   1 dEdedLqrAlalS 13 
                 dEde+L+rAl+ S
  KOO23290.1 401 DEDEQLRRALEAS 413
                 8***********9 PP

  == domain 2  score: 11.1 bits;  conditional E-value: 8.2e-05
         UIM   1 dEdedLqrAlalS 13 
                 d+de+L+rAla S
  KOO23290.1 447 DDDEQLRRALAAS 459
                 89*********99 PP

>> EccE  Putative type VII ESX secretion system translocon, EccE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.9   2.4     0.001       3.7      31      77 ..     371     417 ..     356     443 .. 0.83
   2 ?    0.2   0.5      0.27   9.7e+02      41      61 ..     450     470 ..     434     480 .. 0.53

  Alignments for each domain:
  == domain 1  score: 7.9 bits;  conditional E-value: 0.001
        EccE  31 gaaraaaaaarRlakaLreqGirarvleaeeldaalaalavglaaap 77 
                    +a+ a +  +++aL ++Gi+a++  ae+ d+ l++++++++ ++
  KOO23290.1 371 ATPAAIGAYSGSVMAALSQAGIAASAFGAEDEDEQLRRALEASKLES 417
                 556777888999***********************999999887665 PP

  == domain 2  score: 0.2 bits;  conditional E-value: 0.27
        EccE  41 rRlakaLreqGirarvleaee 61 
                 ++l +aL+   ++a +l aee
  KOO23290.1 450 EQLRRALAASALEAAMLAAEE 470
                 233344444444444444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (566 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       446  (0.0248759); expected 358.6 (0.02)
Passed bias filter:                      284  (0.0158403); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.52u 0.29s 00:00:00.81 Elapsed: 00:00:00.44
# Mc/sec: 3879.49
//
Query:       KOO23291.1  [L=141]
Description: hypothetical protein Ctob_000606, partial [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
  ------ inclusion threshold ------
        2.9    7.6  13.9       0.23   11.1   5.5    2.5  2  zf-NADH-PPase  NADH pyrophosphatase zinc ribbon domain


Domain annotation for each model (and alignments):
>> zf-NADH-PPase  NADH pyrophosphatase zinc ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.9   1.2      0.02   3.6e+02       2       9 ..       6      13 ..       5      13 .. 0.92
   2 ?   11.1   5.5   1.3e-05      0.23       6      23 ..      34      51 ..      32      51 .. 0.93

  Alignments for each domain:
  == domain 1  score: 0.9 bits;  conditional E-value: 0.02
  zf-NADH-PPase  2 thrFCgrC 9 
                   thr  +rC
     KOO23291.1  6 THRRSPRC 13
                   9******* PP

  == domain 2  score: 11.1 bits;  conditional E-value: 1.3e-05
  zf-NADH-PPase  6 CgrCGaptepaeggwarv 23
                   CgrCG++  +a+g++ r+
     KOO23291.1 34 CGRCGQAAGQARGERRRR 51
                   **************9886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (141 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       577  (0.0321825); expected 358.6 (0.02)
Passed bias filter:                      232  (0.0129399); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.23s 00:00:00.62 Elapsed: 00:00:00.40
# Mc/sec: 1056.34
//
Query:       KOO23292.1  [L=295]
Description: eukaryotic elongation factor 2 kinase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.7e-45  155.4   0.0    2.1e-45  155.1   0.0    1.1  1  Alpha_kinase  Alpha-kinase family
  ------ inclusion threshold ------
       0.12   12.5   0.0       0.23   11.6   0.0    1.4  1  KN17_SH3      KN17 SH3-like C-terminal domain


Domain annotation for each model (and alignments):
>> Alpha_kinase  Alpha-kinase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  155.1   0.0   2.4e-49   2.1e-45       1     184 []      36     216 ..      36     216 .. 0.86

  Alignments for each domain:
  == domain 1  score: 155.1 bits;  conditional E-value: 2.4e-49
                   EE-SSEEEEEESSS...HHT-TT-EEEEEEE-STCCTT.-HHHHHHHHHHHHHHHHHHHHHH......HT--SS--EE---EEEEET..TS--CSEE CS
  Alpha_kinase   1 aegalrkafkakvl...kgdekgnklVaKefkkkaeqk.elelykeevkvqalakelakeFnakarakekkppkkieflealvlelk..eesskklf 91 
                   a+g++rk+ k+ +     +d  +   VaK +  +++    ++ ++ ++k+q++a+++a++Fn     k++ p++k+ f+ a+vlel    + +++++
    KOO23292.1  36 AQGGMRKCHKCVEKvqdGRDVYSIGSVAKFSTIHRDARsAKSAAFADAKMQMVAEYWAQQFN-----KKSPPEHKVAFVVAQVLELPrrSDGPQRWA 127
                   69********955544433444444477755544444468888*******************.....88889999*********76623555566** PP

                   EEEE---S-EEE-B-TTS-B...-SS-SHHHHHHHHHHHHTTTS-EEE--EEET.TEEES-EEE-TT--SS-TT--HHHHHHHHHHHBB--HHH CS
  Alpha_kinase  92 lvEpylegefkKynsnsgyvkedselretmqAFshFtYeasggqllvcDlqGvg.nlLTDpaIhtkdkkrfgdtnlgeegiakFfetHkCnkic 184
                   ++Ep+l+ge+ K+n+n+g v       +t+qAFshFt ++sg+ql +cDlqGvg  l+TDp+Ih++ +  fgd+nlg  gi++F+++H+Cn++c
    KOO23292.1 128 SLEPLLSGEYAKFNNNAGAV----LGGRTAQAFSHFTVVESGEQLCICDLQGVGgSLFTDPQIHSRAG-SFGDGNLGRGGIDRFLASHRCNEVC 216
                   ********************....78899***********************9769************.************************9 PP

>> KN17_SH3  KN17 SH3-like C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   2.5e-05      0.23       2      37 ..      18      53 ..      17      57 .. 0.95

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 2.5e-05
    KN17_SH3  2 kdyWlargivVKiiskklgdGkyykkKgvvekvede 37
                +d W+ + + V i   + ++G   k +  vekv+d 
  KOO23292.1 18 TDEWISEQCEVSIAPNSFAQGGMRKCHKCVEKVQDG 53
                8********************************996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (295 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       519  (0.0289475); expected 358.6 (0.02)
Passed bias filter:                      385  (0.0214736); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.41u 0.27s 00:00:00.68 Elapsed: 00:00:00.40
# Mc/sec: 2203.97
//
Query:       KOO23293.1  [L=1327]
Description: dicer-like protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      2e-18   66.8   0.0    7.3e-17   61.7   0.0    2.3  2  DEAD        DEAD/DEAH box helicase
    1.9e-15   57.2   0.0    5.6e-15   55.6   0.0    1.8  1  Helicase_C  Helicase conserved C-terminal domain
    1.9e-11   44.3   0.0    3.5e-11   43.4   0.0    1.4  1  ResIII      Type III restriction enzyme, res subunit
     0.0016   19.1   0.1     0.0071   17.0   0.1    2.1  2  dsrm        Double-stranded RNA binding motif
  ------ inclusion threshold ------
       0.19   12.6   0.9       0.68   10.8   0.9    2.0  1  FliT        Flagellar protein FliT


Domain annotation for each model (and alignments):
>> DEAD  DEAD/DEAH box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.7   0.0     2e-20   7.3e-17       2     136 ..     537     674 ..     536     712 .. 0.79
   2 ?    2.7   0.0     0.026        92      48     105 ..     898     961 ..     753     976 .. 0.79

  Alignments for each domain:
  == domain 1  score: 61.7 bits;  conditional E-value: 2e-20
                 HHHHHHHHHHHTTCEEEEEESTTSSHHHHHHHHHHHHHHHS..TTSTS-EEEEEESSHHHHHHHHHHHHHHTTTST..SEEE.EEETTSSHHHHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxx.xxxxxxxxxxxxxxxx RF
        DEAD   2 diQaeaiplilgggdvlvaaeTGsGKTlaflipvlqivyet..kgktgpkalivePtreLaeqtlnnlkkfkkyid..lrvl.liiggvaardqlskld 95 
                 ++Q e++++ +  ++ +v+ +TG GKT +++  v  +++    + ++g k+l+++Pt  L+eq+++ ++++  +++   +++   +gg ++   ++   
  KOO23293.1 537 PYQMECLKAGM-AENTIVCLDTGLGKTPIAVKLVD-HFLAAatEASDGSKVLFIVPTVVLVEQQARVCRQYSANARcvTELCgNRLGGWTQ-ASWDLCI 632
                 78999999999.77**************9776665.444445789****************************866423333333566555.4444444 PP

                 TTCSEEEEEHHHHHH.HHHCTSSHCTTEEEEEEETHHHHHHT CS
                 xxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD  96 ngvdivvgtpgrldd.llstgklnlsqvrflVlDEadrlldq 136
                 ++ d++vgtp  ++d ++++g+l+ls+++++V+DE+++   +
  KOO23293.1 633 QTSDVLVGTPAIFADaIITRGYLDLSRFSLIVFDEVHNATGN 674
                 99*************6669******************98776 PP

  == domain 2  score: 2.7 bits;  conditional E-value: 0.026
                 -EEEEEESSHHHHHHHHHHHHHHTTTSTSEEEEEET.TSSHHHHHHHH....HTT.CSEEEEEH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxx....xxx.xxxxxxxx RF
        DEAD  48 pkalivePtreLaeqtlnnlkkfkkyidlrvlliig.gvaardqlskl....dng.vdivvgtp 105
                  ++ +  P+  L +q++++   ++  +++r+ +i g g+  ++q+s++    ++g v+i+v+t 
  KOO23293.1 898 EQVALSFPLAYLLNQHFERPDCVGAACGVRADVISGvGTMSSSQRSAVlerfKKGeVRILVATA 961
                 56777889999**************9998888876664444444444434335668*****997 PP

>> Helicase_C  Helicase conserved C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.6   0.0   1.6e-18   5.6e-15       5     107 ..     873     994 ..     869     997 .. 0.84

  Alignments for each domain:
  == domain 1  score: 55.6 bits;  conditional E-value: 1.6e-18
                 HHHHHH......HHTTTTSEEEEEESSHH.HHHHHHHHHHHT...........TSTEEEEST..TSTHHHHHHHHHHHHTTSSSEEEESGGGTSSSTST CS
  Helicase_C   5 allell......kleeeggkilifvntid.rlekvklllekk...........gikvavlhg..elpqnereeileqfnkgesdvLiatdvaerGidip 83 
                 +llel+      + ++ ++k ++fv+++  ++  + +ll+++           g+++ v+ g  ++++++r ++le+f+kge+++L+at ++e+G+d+ 
  KOO23293.1 873 RLLELVednlkrHANQAQYKGIVFVEQVAlSF-PLAYLLNQHferpdcvgaacGVRADVISGvgTMSSSQRSAVLERFKKGEVRILVATAAIEEGLDVS 970
                 555555555577778999999********533.46777666668889999999888888877558********************************** PP

                 TESEEEESSSSSSHHHHHHHHTTS CS
  Helicase_C  84 kvnlVinfdlprnvtsyiqriGRt 107
                 ++++V++++    ++s iq  GR+
  KOO23293.1 971 DCQFVVRYSHFNVPKSHIQGTGRA 994
                 ***********************8 PP

>> ResIII  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.4   0.0   9.7e-15   3.5e-11       2     167 ..     533     703 ..     532     706 .. 0.77

  Alignments for each domain:
  == domain 1  score: 43.4 bits;  conditional E-value: 9.7e-15
                 -EE-HHHHHHHHHHT......TTSEEEEEESTTSTHHHHHHHHHHHH-S.........-EEEEESSHHHHHHHHHHGGGGTGG.......GEEE....E CS
      ResIII   2 lelreyQeeaienlleklkskrdkrglikmaTGtGKTlvaaklierllkkgkee....kflflvprkslleqtleefkkflseayke...igkk....v 89 
                 lelr+yQ+e++++ +        ++ ++ + TG GKT +a+kl++++l ++ e     k+lf+vp+  l+eq  +  ++++ +a+       ++    +
  KOO23293.1 533 LELRPYQMECLKAGM-------AENTIVCLDTGLGKTPIAVKLVDHFLAAATEAsdgsKVLFIVPTVVLVEQQARVCRQYSANARCVtelC-GNrlggW 623
                 589999999999987.......46789999*******************99988999*****************99999999987545542.3333333 PP

                 SSS-B--.......-SEEEEEHHHHHHTH........HHHTTT-SEEEEETGGGTTS.T........TTHHHHHT.---SEEEEEES CS
      ResIII  90 sgdkkkakekdstnkkilvttiqsldadseeeeeeseellrdrfdviiiDEaHrlgakk........swreilek.fkeavllglTA 167
                 ++ +       ++++++lv t   +  ++     ++  l+ +rf +i++DE+H++++++        ++ ++++k +    +lglTA
  KOO23293.1 624 TQAS---WDLCIQTSDVLVGTPAIFADAI----ITRGYLDLSRFSLIVFDEVHNATGNSpmaslmndAYWAAKDKgVAVPHILGLTA 703
                 3333...4447899999999999888888....5677888999**************943334444444444444145589999998 PP

>> dsrm  Double-stranded RNA binding motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.0       2.9     1e+04      31      46 ..    1153    1169 ..    1147    1174 .. 0.74
   2 !   17.0   0.1     2e-06    0.0071       2      63 ..    1243    1309 ..    1242    1311 .. 0.86

  Alignments for each domain:
  == domain 1  score: -2.7 bits;  conditional E-value: 2.9
                  E.EEEEEEEETTEEEEE CS
        dsrm   31 p.kFvvtvkvngklygs 46  
                  + +F  tv+v ++l g+
  KOO23293.1 1153 RhRFLYTVVVRMRLAGY 1169
                  338999****9998775 PP

  == domain 2  score: 17.0 bits;  conditional E-value: 2e-06
                  HHHHHHHHHHTT...SEEEEEEEEEESSTSSSEEEEEEEEE....TTEEEEEEEESSHHHHHHHHHHHH CS
        dsrm    2 KskLqeycqkkg...kppnyeyvseegpphslpkFvvtvkv....ngklygsGvgsnKKeAeqsAAeda 63  
                  K kL+e + k +    ++ +++  +++pp+   +F++tv++    ++ +++ + +s+K +Aeq+AA++a
  KOO23293.1 1243 KGKLMEKAVKLWktsDGVRFQTQVSGQPPTQ--IFQATVTLlplgEDCKFTGAQASTKIKAEQAAAAAA 1309
                  7788888888887766777777777777775..*********************************998 PP

>> FliT  Flagellar protein FliT
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.9   0.00019      0.68      10      54 ..     326     375 ..     323     376 .. 0.90

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00019
                 HHHHHHHHHHHHHHHHHHHCS-.....-ST--HHHHHHHHHHHHHHHHHH CS
        FliT  10 Wdelaaleaerqqlverlreld.....aaplspaereekrellrriland 54 
                 W+e+ ++ +++q+lv++l e        a   +++r++++e +r++ a++
  KOO23293.1 326 WEEFLEMKRQCQELVQELNEKVkrledGASGHTSQRADLAEWMRKLSADE 375
                 *********************99999999999999999999999988765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1327 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       726  (0.0404931); expected 358.6 (0.02)
Passed bias filter:                      672  (0.0374812); expected 358.6 (0.02)
Passed Vit filter:                        69  (0.00384851); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.90u 0.28s 00:00:01.18 Elapsed: 00:00:00.44
# Mc/sec: 9112.29
//
Query:       KOO23294.1  [L=179]
Description: multi-sensor signal transduction histidine kinase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.2e-08   35.2   0.0      2e-08   34.4   0.0    1.4  1  PAS_9     PAS domain
    4.8e-06   26.5   0.0    9.8e-06   25.6   0.0    1.5  1  PAS       PAS fold
    0.00078   19.7   0.1     0.0038   17.5   0.1    1.9  1  PAS_4     PAS fold
     0.0019   18.2   0.0     0.0032   17.5   0.0    1.4  1  PAS_8     PAS domain


Domain annotation for each model (and alignments):
>> PAS_9  PAS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.4   0.0   4.4e-12     2e-08       3      94 ..       8     115 ..       6     124 .. 0.70

  Alignments for each domain:
  == domain 1  score: 34.4 bits;  conditional E-value: 4.4e-12
       PAS_9   3 gili..dnpdgrilyaNeaalrllGyspeevlgksitdlf..vtdpeanerlraaleqgrk..............kerevevvlirkng.etfwvllta 82 
                 +++i  +   gri+ +N a+ +l Gy pe+ lgk  ++l+  +    + ++ r + +q  +                 +  +v+++k+g e +++l t+
  KOO23294.1   8 AVIIteTKAPGRIIACNAAWTQLCGYAPEDALGKTPRMLQgkD---TSVCKARSFTRQCHQnkirseengfaawqGRARTKLVNYTKDGrEFVHCLQTL 103
                 55554667789*****************************662...33333333333333344467777777999777778888888884555688888 PP

       PAS_9  83 spvkdddgelvg 94 
                 + + +d ge ++
  KOO23294.1 104 RVMDEDTGEEFF 115
                 888766666554 PP

>> PAS  PAS fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.6   0.0   2.2e-09   9.8e-06      10     100 ..       7     109 ..       3     117 .. 0.64

  Alignments for each domain:
  == domain 1  score: 25.6 bits;  conditional E-value: 2.2e-09
                 SSSEEEEEETTSBEEEECHHHHHHHSSTHHHCTTSBGGGGBSTTHHH.....HHHHHHHHHHHHTT-ECCCCEEEEC.......TTSSEEEEEEEEEEE CS
         PAS  10 lpdpifvvDedgrilyvNaaaeellGlsreevlgkslldliheedda.....elaelleqlleqgeesrageisfkl.......rdgrpihlevraspv 96 
                  ++ i  + + gri+ +Naa+++l+G+++e++lgk+  +l   +++       ++++ ++ +++ e++ a +  + +       +dgr++  ++++  v
  KOO23294.1   7 NAVIITETKAPGRIIACNAAWTQLCGYAPEDALGKTPRMLQGKDTSVckarsFTRQCHQNKIRSEENGFAAWQGRARtklvnytKDGREFVHCLQTLRV 105
                 55555556678*****************************98888885555533333333333333333333222225666777777766666666666 PP

                 EETT CS
         PAS  97 rdag 100
                 +d++
  KOO23294.1 106 MDED 109
                 6655 PP

>> PAS_4  PAS fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5   0.1   8.4e-07    0.0038      13      46 ..      16      48 ..       4     125 .. 0.63

  Alignments for each domain:
  == domain 1  score: 17.5 bits;  conditional E-value: 8.4e-07
       PAS_4 13 pdgrvlyaNaaaaelfgappeellGktlaellpe 46
                + gr++++Naa+ +l g++pe++lGkt++ +l  
  KOO23294.1 16 APGRIIACNAAWTQLCGYAPEDALGKTPR-MLQG 48
                569************************99.3333 PP

>> PAS_8  PAS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5   0.0   7.1e-07    0.0032      11      44 ..       6      42 ..       1      62 [. 0.79

  Alignments for each domain:
  == domain 1  score: 17.5 bits;  conditional E-value: 7.1e-07
       PAS_8 11 pdgiavvd..lgdrivdvNqaalellGys.adlkgel 44
                +++++++   + +ri+ +N a+ +l+Gy  +d +g++
  KOO23294.1  6 NNAVIITEtkAPGRIIACNAAWTQLCGYApEDALGKT 42
                56889876445558**************987777765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (179 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       406  (0.0226449); expected 358.6 (0.02)
Passed bias filter:                      339  (0.0189079); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.40u 0.24s 00:00:00.64 Elapsed: 00:00:00.39
# Mc/sec: 1377.65
//
Query:       KOO23295.1  [L=827]
Description: hypothetical protein Ctob_000596, partial [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.5e-09   38.2   0.0    7.1e-08   32.7   0.0    2.9  3  Laminin_G_3    Concanavalin A-like lectin/glucanases superfam
      0.001   19.1   0.1      0.002   18.1   0.1    1.4  1  Peptidase_M16  Insulinase (Peptidase family M16)


Domain annotation for each model (and alignments):
>> Laminin_G_3  Concanavalin A-like lectin/glucanases superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.0   0.0     0.048   4.3e+02      94     112 ..     700     718 ..     693     739 .. 0.73
   2 ?    0.7   0.0      0.06   5.4e+02      94     111 ..     732     749 ..     723     763 .. 0.78
   3 !   32.7   0.0   7.9e-12   7.1e-08      92     150 ..     762     821 ..     755     823 .. 0.90

  Alignments for each domain:
  == domain 1  score: 1.0 bits;  conditional E-value: 0.048
  Laminin_G_3  94 lrlYvNGvevgsatltggl 112
                  +++Y NGv v++++ +  +
   KOO23295.1 700 AQIYWNGVSVATSASMHFP 718
                  689*********9876653 PP

  == domain 2  score: 0.7 bits;  conditional E-value: 0.06
  Laminin_G_3  94 lrlYvNGvevgsatltgg 111
                  +++Y NGv v++++ +  
   KOO23295.1 732 AQIYWNGVSVATSASMHF 749
                  789*********976654 PP

  == domain 3  score: 32.7 bits;  conditional E-value: 7.9e-12
  Laminin_G_3  92 gtlrlYvNGvevgsatltggllsatsgplviGrdp.ggddpfdGlidevriynralsaae 150
                  g +++Y NG+ v++++ +  +l+ + ++l++G+++  gd+ f+G++ ++ +++ als+a+
   KOO23295.1 762 GPAQIYWNGASVATTSSMRFPLPMSRSNLYVGKSHsAGDPMFTGQMKDLLVWDVALSPAQ 821
                  3489***********999999999**********9668********************98 PP

>> Peptidase_M16  Insulinase (Peptidase family M16)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.1   0.1   2.2e-07     0.002      70     121 ..     173     228 ..     168     237 .. 0.74

  Alignments for each domain:
  == domain 1  score: 18.1 bits;  conditional E-value: 2.2e-07
                    SSEEEEEEEEEGGGHHHHHHHHHHHHHSBTT....SHHHHHHHHHHHHHHHHHHCC CS
  Peptidase_M16  70 rentvYyvevlskdlekaldvladvfkapll....eesevererkvvekeveavda 121
                      +t  +++v s++le+al+++a +f+ap++    ++++v+rer+   ++v+ ++a
     KOO23295.1 173 MAKTHLFFKVVSSNLEQALERFAAFFTAPTFatraSSDKVDRERNMSPERVANISA 228
                    568999***********************992222344566666666666666555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (827 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       592  (0.0330191); expected 358.6 (0.02)
Passed bias filter:                      372  (0.0207485); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.61u 0.28s 00:00:00.89 Elapsed: 00:00:00.40
# Mc/sec: 6262.83
//
Query:       KOO23296.1  [L=196]
Description: hypothetical protein Ctob_000597 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.077   13.6   0.6       0.26   11.9   0.1    1.9  2  YabA      Initiation control protein YabA


Domain annotation for each model (and alignments):
>> YabA  Initiation control protein YabA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.2   0.1     0.087   1.6e+03      12      37 ..       7      32 ..       3      46 .. 0.66
   2 ?   11.9   0.1   1.5e-05      0.26      10      55 ..      44      89 ..      38     105 .. 0.83

  Alignments for each domain:
  == domain 1  score: -0.2 bits;  conditional E-value: 0.087
                HHHHHHHHHHHHHHHHHHHHHHHHHH CS
        YabA 12 eleeqleelleeleelkeelaellee 37
                ++e  l++ +e++e+lk++la+   +
  KOO23296.1  7 SFEVLLHQKNESIERLKAALATQSAH 32
                56666777888888888887765544 PP

  == domain 2  score: 11.9 bits;  conditional E-value: 1.5e-05
                HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHXXX CS
        YabA 10 leeleeqleelleeleelkeelaelleenaeLeleneklrerleee 55
                + ++ ++l++++++ +e+  e+++++ +n+eL++e ++lr  l e+
  KOO23296.1 44 ILRFVRELARVHRRADEVGVEFKKVVIQNRELRVEADRLRASLVEA 89
                556778899999999*************************999444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (196 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       872  (0.0486363); expected 358.6 (0.02)
Passed bias filter:                      576  (0.0321267); expected 358.6 (0.02)
Passed Vit filter:                        55  (0.00306766); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.21s 00:00:00.63 Elapsed: 00:00:00.37
# Mc/sec: 1595.01
//
Query:       KOO23297.1  [L=105]
Description: hypothetical protein Ctob_000598 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
     0.0023   18.4   0.6     0.0028   18.1   0.6    1.2  1  Spectrin      Spectrin repeat
     0.0088   16.8   1.0      0.089   13.6   1.0    2.1  1  CHIP_TPR_N    CHIP N-terminal tetratricopeptide repeat domain
     0.0092   16.2   4.1      0.016   15.5   0.8    2.2  2  ABC_tran_CTD  ABC transporter C-terminal domain
  ------ inclusion threshold ------
        0.1   12.7   0.2       0.12   12.4   0.2    1.2  1  Baculo_PEP_C  Baculovirus polyhedron envelope protein, PEP, C
       0.12   12.1   0.4       0.98    9.2   0.1    2.1  2  DivIC         Septum formation initiator


Domain annotation for each model (and alignments):
>> Spectrin  Spectrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.1   0.6   7.9e-07    0.0028      24      95 ..      31     101 ..      17     105 .] 0.90

  Alignments for each domain:
  == domain 1  score: 18.1 bits;  conditional E-value: 7.9e-07
                 HCCSSCSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHTTHHHHHHHHHHHHHHHHHHHHH CS
    Spectrin  24 lssedlgkdleevqallkkhkaleaelaaqqervkalnelaeklldeghsaseeieerleelnerWeeLkel 95 
                 l s++ ++  ++v al ++++  e++l+a     + + e a++ll+  +++ + +++ l++l+er +++ e 
  KOO23297.1  31 L-SMNRAHNEAAVGALRQRLTHCEQDLDALYADPTGVRESARELLSTADQTIPTLQALLSQLDERRRQVGEP 101
                 4.7778899**************************************9*******************99875 PP

>> CHIP_TPR_N  CHIP N-terminal tetratricopeptide repeat domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.6   1.0   2.5e-05     0.089      50      82 ..      56      97 ..       4      97 .. 0.68

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 2.5e-05
                H.........HCHHHHHHHHHHHHHHHHHHHHHHHCCHCCCX CS
  CHIP_TPR_N 50 k.........leeeeeeieeeaderlaeLnelFaqvderrrk 82
                          ++e ++e+ + ad+ +  L++l +q derrr+
  KOO23297.1 56 LdalyadptgVRESARELLSTADQTIPTLQALLSQLDERRRQ 97
                144556666789999999**********************95 PP

>> ABC_tran_CTD  ABC transporter C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.8   4.4e-06     0.016      21      62 ..      21      61 ..       3      62 .. 0.89
   2 ?    2.0   0.1     0.071   2.6e+02      10      29 ..      74      93 ..      67     100 .. 0.60

  Alignments for each domain:
  == domain 1  score: 15.5 bits;  conditional E-value: 4.4e-06
  ABC_tran_CTD 21 EeeiaeleaeladpelysdpeklaelsaeleeleaeLeelye 62
                  E+++ael ++l+ +    +++++ +l ++l+  e++L++ly+
    KOO23297.1 21 EKKQAELSKQLSMNR-AHNEAAVGALRQRLTHCEQDLDALYA 61
                  899999999999998.456699******************97 PP

  == domain 2  score: 2.0 bits;  conditional E-value: 0.071
  ABC_tran_CTD 10 leeleaeIeaLEeeiaelea 29
                  l + +++I  L++ +++l++
    KOO23297.1 74 LSTADQTIPTLQALLSQLDE 93
                  44555566666666666555 PP

>> Baculo_PEP_C  Baculovirus polyhedron envelope protein, PEP, C terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.2   3.4e-05      0.12      15      81 ..      24      93 ..      13     104 .. 0.72

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 3.4e-05
  Baculo_PEP_C 15 fldLtnvLnairlqnvqilaqlatlldaietqLnalsedlksllaeldt...rldtlltnLtdalnalqd 81
                  + +L+++L+  r+ n   +++l + l++ e+ L+al +d + + ++ ++     d+++ +L++ l +l +
    KOO23297.1 24 QAELSKQLSMNRAHNEAAVGALRQRLTHCEQDLDALYADPTGVRESAREllsTADQTIPTLQALLSQLDE 93
                  6899999999999999999************999999986654433333222555555556666666554 PP

>> DivIC  Septum formation initiator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.2   0.1   0.00027      0.98      20      64 ..      29      73 ..      22      79 .. 0.89
   2 ?    1.2   0.1     0.088   3.2e+02      23      42 ..      78      97 ..      74     100 .. 0.81

  Alignments for each domain:
  == domain 1  score: 9.2 bits;  conditional E-value: 0.00027
                HHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-XXXXXXXXXXXXXX CS
       DivIC 20 kqlkqeiaalqaelaklkaeneeLeaevkdLksdedyieerARse 64
                kql  ++a  +a + +l+++    e+ ++ L  d+  ++e AR+ 
  KOO23297.1 29 KQLSMNRAHNEAAVGALRQRLTHCEQDLDALYADPTGVRESAREL 73
                56777889999********************99**********64 PP

  == domain 2  score: 1.2 bits;  conditional E-value: 0.088
                HHHHHHHHHHHHHHHHHHHH CS
       DivIC 23 kqeiaalqaelaklkaenee 42
                +q i +lqa l +l +++++
  KOO23297.1 78 DQTIPTLQALLSQLDERRRQ 97
                68888999999999999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (105 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       857  (0.0477997); expected 358.6 (0.02)
Passed bias filter:                      506  (0.0282224); expected 358.6 (0.02)
Passed Vit filter:                        52  (0.00290033); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.35u 0.23s 00:00:00.57 Elapsed: 00:00:00.35
# Mc/sec: 908.73
//
Query:       KOO23298.1  [L=674]
Description: hATPase c domain [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    7.1e-17   60.5   0.0    5.2e-08   31.2   0.0    3.0  3  DUF3684      Protein of unknown function (DUF3684)
    0.00012   22.5   0.0    0.00029   21.3   0.0    1.6  1  HATPase_c    Histidine kinase-, DNA gyrase B-, and HSP90-like
    0.00021   21.1   0.0    0.00037   20.3   0.0    1.4  1  HATPase_c_3  Histidine kinase-, DNA gyrase B-, and HSP90-like


Domain annotation for each model (and alignments):
>> DUF3684  Protein of unknown function (DUF3684)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.1   0.0   0.00033         2     158     229 ..     278     352 ..     274     354 .. 0.75
   2 !   31.2   0.0   8.7e-12   5.2e-08     814     902 ..     353     435 ..     350     438 .. 0.89
   3 !   22.7   0.0   3.2e-09   1.9e-05    1015    1098 .]     431     514 ..     428     514 .. 0.88

  Alignments for each domain:
  == domain 1  score: 6.1 bits;  conditional E-value: 0.00033
     DUF3684 158 aeLeratkKppPkktklailtsskdeada...skkedeaskkaadsiFasvlpskkeqgrifiGf.ptaqTTGlga 229
                 a L r   K +P + +l +l+   +  +    s++   +++ ++ +++a + + ++ +gri+iG  +t q TG++a
  KOO23298.1 278 AGLCRLLGKGLPDRSTLRLLYPVPSGGAPaasSADAPGTASPHSAALLAAMHALRE-DGRIYIGIgQTDQSTGVAA 352
                 66889999*************76554433233444444556677768988888877.8******8579*****975 PP

  == domain 2  score: 31.2 bits;  conditional E-value: 8.7e-12
     DUF3684 814 lgvkedPpieelvnrLlkkpPkdkeeAkklFeylatrvaelseselakLskakivPvkkkkkeeekekkvrlvaPsqcylgeesstykk 902
                 l +  +P ie++v++L+++pP ++++A+++Fey+ +r aels++    Ls+a++vPv++        + v +++P++ +++ + ++++ 
  KOO23298.1 353 LRLPLRPCIEAVVRQLITAPP-TEKSAERTFEYMHRRSAELSTELWGLLSDAPVVPVRSGV-----GQGVGHAPPHALFFSGARKNWSA 435
                 667789**************9.6789*******************************8777.....479***********998887776 PP

  == domain 3  score: 22.7 bits;  conditional E-value: 3.2e-09
     DUF3684 1015 keyqLakasdivivDdvnsyrlFkesllaaPqedlLEefylaLGakrLsslvkeelr..igaelkdqkkaaklrklvlERlklFLh 1098
                  k+++  +a+  +i D+  +++lF+   l+aP++  L e+y+ LG ++Ls+ v+ ++r   g+  +++k ++++ + + ER+ l Lh
  KOO23298.1  431 KNWSAVSAAGCFIGDNQRYVELFS--PLVAPEDADLKELYTFLGVRSLSEAVTVSARpvAGSVPSSSKLTQQVLRRIEERTCLLLH 514 
                  7899999****************8..589*********************9988776314555666999***************99 PP

>> HATPase_c  Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.3   0.0   4.8e-08   0.00029       9      82 ..      34     106 ..      31     147 .. 0.77

  Alignments for each domain:
  == domain 1  score: 21.3 bits;  conditional E-value: 4.8e-08
                 HHHHHHHHHHHHHSTTTEEEEEEEE..EETEEEEEEEESSSSSTTHHHTGTCS..TTCHHCSTCHTSTSSSHHHHHHH CS
   HATPase_c   9 iisnlvdNavkfatkageieveika..seddlvisveDnGiGipkedlkklfe..kfsqddstkrggggtGlGlsivk 82 
                 ++++l++N++++  +a++ ++++++  +    +++v+++G+   ++d +++ +  k  +   ++++ g +G+G++ v 
  KOO23298.1  34 VLRELLQNSDDA--EATHSRITLHVaaDGSVAKLEVSNSGREFGEADWERVAMiaKGNT---DSSSVGLFGVGFYSVF 106
                 799********7..78888888887544478999***************9999645444...5556667777776663 PP

>> HATPase_c_3  Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.3   0.0   6.3e-08   0.00037       2      92 ..      29     116 ..      28     131 .. 0.88

  Alignments for each domain:
  == domain 1  score: 20.3 bits;  conditional E-value: 6.3e-08
  HATPase_c_3   2 sl.ekAlaelvdNsldAdaenvkievnknr.gktgeivieDdGkGmseeelknalrlatsskeakrkstslGkkGiGlklAslslgkkltvit 92 
                  s   ++l el++Ns dA+a++  i+++    g+++++ +   G    e++ +++  +a+ +++    s s+G +G+G + +++s +++ ++ +
   KOO23298.1  29 SAsFFVLRELLQNSDDAEATHSRITLHVAAdGSVAKLEVSNSGREFGEADWERVAMIAKGNTD----SSSVGLFGVG-FYSVFSASDQPEIQS 116
                  554789***************8887775554899*******************999*****99....89********.*******99988877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (674 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       448  (0.0249875); expected 358.6 (0.02)
Passed bias filter:                      420  (0.0234257); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.61u 0.28s 00:00:00.89 Elapsed: 00:00:00.43
# Mc/sec: 4663.85
//
Query:       KOO23299.1  [L=377]
Description: hypothetical protein Ctob_000615 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
     0.0063   17.1   0.1       0.19   12.4   0.1    2.9  3  Ank_4     Ankyrin repeats (many copies)
  ------ inclusion threshold ------
       0.15   12.7   0.3        2.7    8.8   0.0    2.8  2  Ank_3     Ankyrin repeat
       0.16   12.5   0.1       0.85   10.3   0.0    2.1  2  Ank_2     Ankyrin repeats (3 copies)


Domain annotation for each model (and alignments):
>> Ank_4  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.4   0.1   3.2e-05      0.19      18      54 ..      97     132 ..      93     133 .. 0.93
   2 ?    0.4   0.0      0.17     1e+03      15      30 ..     130     145 ..     130     147 .. 0.89
   3 ?    1.1   0.0      0.11   6.3e+02      27      43 ..     232     247 ..     212     271 .. 0.81

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 3.2e-05
       Ank_4  18 rlLlekgadinaqdnrsGetalhiAakrgnveilklL 54 
                   Ll ++ + n + +rsG ++l++A++  + +++++L
  KOO23299.1  97 SMLLKSDFSANIR-DRSGASLLYHALQYDHRHMAEML 132
                 67999999*****.*********************99 PP

  == domain 2  score: 0.4 bits;  conditional E-value: 0.17
       Ank_4  15 elvrlLlekgadinaq 30 
                 e++r  +e gad+n+ 
  KOO23299.1 130 EMLRVVVEAGADVNMP 145
                 6899999*******96 PP

  == domain 3  score: 1.1 bits;  conditional E-value: 0.11
       Ank_4  27 inaqdnrsGetalhiAa 43 
                 ++   ++  +t lh A+
  KOO23299.1 232 WDTP-DDAELTSLHLAV 247
                 4454.88899****998 PP

>> Ank_3  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.8   0.0   0.00045       2.7       2      30 ..     113     143 ..     112     144 .. 0.88
   2 ?    0.3   0.0      0.27   1.6e+03       4      12 ..     241     249 ..     239     254 .. 0.83

  Alignments for each domain:
  == domain 1  score: 8.8 bits;  conditional E-value: 0.00045
       Ank_3   2 GetpLhlAarsgnl...eivkfLlenkgadvn 30 
                 G ++L++A+ +++    e+++  +e  gadvn
  KOO23299.1 113 GASLLYHALQYDHRhmaEMLRVVVE-AGADVN 143
                 889***********76668999999.8****9 PP

  == domain 2  score: 0.3 bits;  conditional E-value: 0.27
       Ank_3   4 tpLhlAars 12 
                 t LhlA++ 
  KOO23299.1 241 TSLHLAVSV 249
                 99****985 PP

>> Ank_2  Ankyrin repeats (3 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.0   0.00014      0.85      41      81 ..      93     144 ..      86     146 .. 0.70
   2 ?   -1.3   0.0      0.55   3.3e+03      51      61 ..     237     247 ..     199     250 .. 0.63

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.00014
       Ank_2  41 i..vklLleh......adndgrtpLhyAarsghleivklLl...ekgadinl 81 
                 +  v++Ll+        d++g + L++A +++h  ++++L    e gad+n+
  KOO23299.1  93 CskVSMLLKSdfsaniRDRSGASLLYHALQYDHRHMAEMLRvvvEAGADVNM 144
                 4558899985567555559999999****99775555554433388999997 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 0.55
       Ank_2  51 ndgrtpLhyAa 61 
                 +   t Lh+A+
  KOO23299.1 237 DAELTSLHLAV 247
                 33445666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (377 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       504  (0.0281109); expected 358.6 (0.02)
Passed bias filter:                      338  (0.0188521); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.46u 0.25s 00:00:00.71 Elapsed: 00:00:00.39
# Mc/sec: 2883.51
//
Query:       KOO23300.1  [L=217]
Description: cargo transport protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    4.2e-33  114.8   0.0    4.9e-33  114.6   0.0    1.0  1  EMP24_GP25L  emp24/gp25L/p24 family/GOLD
     0.0067   16.7   0.0      0.011   16.0   0.0    1.3  1  SdrD_B       SdrD B-like domain


Domain annotation for each model (and alignments):
>> EMP24_GP25L  emp24/gp25L/p24 family/GOLD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  114.6   0.0   5.5e-37   4.9e-33       1     182 []      26     212 ..      26     212 .. 0.91

  Alignments for each domain:
  == domain 1  score: 114.6 bits;  conditional E-value: 5.5e-37
  EMP24_GP25L   1 altfklpageekCfyeelkkgtlltgsyqvt........dgg...aaldvdlsvkdpdgngerlvkkkdresegdfsftakesgeykvCfdnsfstks 87 
                  a+ f ++++ ++Cf e++k  + + g++ +         dg+   +  ++ ++v+  +++g  +++ +d  s+  f fta+ +gey +Cf+n  ++  
   KOO23300.1  26 AFGFSVEPQTTECFEERVKVSDHVLGQWGLVlllglenpDGDaapDITGFTVKVT--SPQGDKVYHMEDEPSG-FFDFTASVEGEYFICFTNGRTN-- 118
                  689***************************9988887775555543355566666..8888******777776.******************7665.. PP

  EMP24_GP25L  88 skkvsfdievgseasdykdsakkekletleselkkleekldsikreqkylrereerlrdtnestnsrvvwwsilqllvlvlvavlqvyyLkrfFk 182
                  + +v++ i+v +e +d  + ak+e+l+++e+++k+l+e ++ +++ q+ +re+ + + ++  st ++++++++++ +vlv+v+v+q +yLk+fF+
   KOO23300.1 119 REDVTLKITV-NEPPDLIKLAKTEHLSPIEERIKNLHEAMNMVRDVQDEIREHDAAQLKMTHSTRTWLLYFTLIEAAVLVGVTVWQNLYLKSFFE 212
                  59********.678999*****************************************************************************7 PP

>> SdrD_B  SdrD B-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.0   1.2e-06     0.011      22      67 ..      70     115 ..      62     133 .. 0.86

  Alignments for each domain:
  == domain 1  score: 16.0 bits;  conditional E-value: 1.2e-06
      SdrD_B  22 kgisgvtVtLkdakgevvatttTdasGkYkFtnltpGeYkVeftap 67 
                 + i+g tV++++ +g++v     + sG + Ft   +GeY + ft+ 
  KOO23300.1  70 PDITGFTVKVTSPQGDKVYHMEDEPSGFFDFTASVEGEYFICFTNG 115
                 679****************************************984 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (217 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       738  (0.0411624); expected 358.6 (0.02)
Passed bias filter:                      616  (0.0343577); expected 358.6 (0.02)
Passed Vit filter:                        58  (0.00323498); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.42u 0.23s 00:00:00.65 Elapsed: 00:00:00.38
# Mc/sec: 1711.03
//
Query:       KOO23301.1  [L=263]
Description: peptidyl-prolyl cis-trans isomerase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.8e-21   76.0   0.0      6e-21   75.4   0.0    1.3  1  Pro_isomerase  Cyclophilin type peptidyl-prolyl cis-trans iso
  ------ inclusion threshold ------
      0.013   15.6   0.2      0.025   14.7   0.2    1.4  1  TetR_C_21      Tetracyclin repressor-like, C-terminal domain


Domain annotation for each model (and alignments):
>> Pro_isomerase  Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   75.4   0.0   6.7e-25     6e-21       9     154 ..      76     217 ..      66     220 .. 0.86

  Alignments for each domain:
  == domain 1  score: 75.4 bits;  conditional E-value: 6.7e-25
  Pro_isomerase   9 kGrivieLfadkaPktvenFlklvkeg...fYdgttFhRvikgfmvqgGdptgktsageqekkgge.siraipdEitsklkh.krGalamartgke 99 
                    +Gr+++eLf+d +P tve+F ++  ++   +Y g+++ ++ +gf +++Gd t+k +   ++++g+e    ++++E + ++ h ++G+l+   +   
     KOO23301.1  76 RGRLIFELFDDIMPRTVEQFHRMLGSEkqpTYVGSSISKIWPGFKCEAGDRTSKVE---GSSSGQElVFSRVDQEANWQVPHlNPGVLSLTDA--- 165
                    7********************999644566********************888744...334444434479999998677888*******988... PP

  Pro_isomerase 100 pnsagsqFfItlkeaphldgkytvFGkVveGmdvvekiekvetdeerpkknvkiv 154
                       ++s F Itl +a++ldg ++vFGk v G+dv+++i++  +d+ +pk +v i+
     KOO23301.1 166 ---KSSKFNITLRKAEELDGWHAVFGKTVYGFDVLKAISEQGNDNGEPKVPVIIT 217
                    ...49***********************************878887999888886 PP

>> TetR_C_21  Tetracyclin repressor-like, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.7   0.2   2.7e-06     0.025      19      70 ..       8      56 ..       2      63 .. 0.84

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 2.7e-06
   TetR_C_21 19 llRLltWarLeraeeeleeeeeraesleekvaairaaQraGtvdaswkpedl 70
                 +R  +W++L+r+   l+e e  +e+ ++k+a+i+a Q +  ++++++p+++
  KOO23301.1  8 RARPNAWKELQRE---LDERERLEEDNAAKFARIEALQMRSALEDEIDPQKM 56
                567789*****99...555566679************************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (263 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       616  (0.0343577); expected 358.6 (0.02)
Passed bias filter:                      516  (0.0287802); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.46u 0.26s 00:00:00.72 Elapsed: 00:00:00.42
# Mc/sec: 1897.97
//
Query:       KOO23302.1  [L=343]
Description: DNA polymerase iota [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.5e-35  122.4   0.2      2e-35  122.0   0.2    1.2  1  IMS       impB/mucB/samB family
     0.0069   16.7   0.0      0.016   15.5   0.0    1.7  1  IMS_HHH   IMS family HHH motif
  ------ inclusion threshold ------
        0.1   12.8   0.0       0.25   11.6   0.0    1.6  1  Cdd1      Pathogenicity locus


Domain annotation for each model (and alignments):
>> IMS  impB/mucB/samB family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  122.0   0.2   3.3e-39     2e-35       1     149 [.      19     227 ..      19     228 .. 0.96

  Alignments for each domain:
  == domain 1  score: 122.0 bits;  conditional E-value: 3.3e-39
                 EEETTHHHHHHHHHT.T-.TTS-EEEEET....TEEEEE-HHHHTTT--TTSBHHHHHTTHTT.-EEEEEE-HHHHHHHHHHHHHHHHH-S..EEEEET CS
         IMS   1 iDmdaFyasverardpeL.kgkPvvvaqgsekrgiviavsyeArayGvkrgmrikeakklcpd.livvkvdlekyrraskkileilkrfispkvekasi 97 
                 iD+d+Fya+ve++r  +   ++P++v q+      v++++y+Ara+Gv + m+i+ ak++cp+ l     dl++yr+as++i++ l+ f++  v+k+++
  KOO23302.1  19 IDIDCFYAQVEMLRG-RVdPDRPFAVTQK----FLVVTANYAARAAGVGKLMPIDRAKAKCPElLLASGEDLTPYREASAAIFTALTPFGP--VQKLGL 110
                 8**********9998.7889*********....9*****************************777789********************88..****** PP

                 TEEEEE-HH.HHHHHH-S................................................................HHHHHHHHHHHHHHHH- CS
         IMS  98 DEayldltg.leelaese................................................................gaalakelrkaikeelg 131
                 DE+++d+t+  +el +++                                                                ++++a + ++ai ++ g
  KOO23302.1 111 DEMFVDVTAaARELLRADgaiqwsettrihaarhgttsaeaqartgtdyrpqdlrasdqigvaaaleaaaaeddeqarllraASHVAVRCKAAIRAQSG 209
                 *********7666666669******************************************************************************** PP

                 --EEEEEESSHHHHHHHH CS
         IMS 132 ltvsiGiasnkllAKlas 149
                 lt+s+G+as+kllAKl +
  KOO23302.1 210 LTASVGVASSKLLAKLCC 227
                 ****************87 PP

>> IMS_HHH  IMS family HHH motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.0   2.6e-06     0.016       3      32 .]     242     271 ..     239     271 .. 0.89

  Alignments for each domain:
  == domain 1  score: 15.5 bits;  conditional E-value: 2.6e-06
     IMS_HHH   3 dvkefLwplpitkipGiGgklgekLeklGi 32 
                 + ++fL+pl+++ +pG+G+     L++lG+
  KOO23302.1 242 EARAFLAPLDVRVLPGVGSAATGMLHSLGL 271
                 4699***************99999999985 PP

>> Cdd1  Pathogenicity locus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   4.2e-05      0.25       8      47 ..     252     291 ..     248     297 .. 0.88

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 4.2e-05
        Cdd1   8 lqdiPniGkalaedlvelGirsveelkgedpeelyeklek 47 
                  + +P++G a   +l++lG+++v +l   +  +l+++l++
  KOO23302.1 252 VRVLPGVGSAATGMLHSLGLTTVGDLGAISTGALHRALSE 291
                 6789**********************99998888888876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (343 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       325  (0.0181271); expected 358.6 (0.02)
Passed bias filter:                      195  (0.0108762); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.42u 0.22s 00:00:00.64 Elapsed: 00:00:00.38
# Mc/sec: 2734.89
//
Query:       KOO23303.1  [L=265]
Description: hypothetical protein Ctob_000611 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    6.4e-09   36.1   0.0    1.4e-08   35.0   0.0    1.5  2  Methyltransf_21  Methyltransferase FkbM domain
  ------ inclusion threshold ------
       0.13   12.4   0.2       0.26   11.4   0.0    1.6  2  Nup54            Nucleoporin complex subunit 54


Domain annotation for each model (and alignments):
>> Methyltransf_21  Methyltransferase FkbM domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.0      0.42   3.8e+03       1      16 [.       3      16 ..       3      29 .. 0.69
   2 !   35.0   0.0   1.5e-12   1.4e-08      19     149 ..      62     185 ..      47     211 .. 0.78

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 0.42
  Methyltransf_21  1 dvGanigvwdsfanlt 16
                     ++Gan+g  ++ a+++
       KOO23303.1  3 NIGANKG--YNLAEWM 16
                     589***9..5555444 PP

  == domain 2  score: 35.0 bits;  conditional E-value: 1.5e-12
  Methyltransf_21  19 lcggggevlaiEPvpnslpkfeklranlltlavgndvglyelivegksg.gkyfpfavgdtngfstssvlggedaryievpvvtldsfleeikk 111
                       +g++ +++a+E +p+   + + lr+    +a+   ++++e++ e++s+  +     +++  g  +   + +  +     +v+t+d f+  +++
       KOO23303.1  62 DAGARLRMHAFELQPS---NERLLRQL---VALT--DAPVEVHGEAVSNvTGTVFTRDSGAPGYESVAASRRAVRNGLVRNVTTVDAFMAARRI 147
                      35556666********...********...8888..779**9*999988877777777777777777777799***************99999* PP

  Methyltransf_21 112 sridllkiDvEGaElevLeGaqkglkrcqpnlivvEvh 149
                      +r  ++ +D+EG++  vL+G + +l+r  + ++ +E  
       KOO23303.1 148 ERLSFVSVDTEGWDGFVLRGMRGALERKAVDVFEFEYM 185
                      ********************999999988888644433 PP

>> Nup54  Nucleoporin complex subunit 54
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   2.9e-05      0.26       4      56 ..      23      75 ..      20      94 .. 0.84
   2 ?   -3.9   0.0       1.5   1.4e+04      81      93 ..     233     245 ..     233     247 .. 0.79

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 2.9e-05
                T--HHHHHHHHHT-SST.TEEEEEEECHHHHHHHHHHHHHHHHHHHHHHH..HHH CS
       Nup54  4 gvdeekWeeAleenPdpeklvPvpvkGFedLakRvkaQqkevaqhrerlk..eis 56
                +++ +kW ++++++++p     +++ G+  + +R++ Qq++ a +r r++  e++
  KOO23303.1 23 DISHKKWHQLMMHSASPP--CALQCCGVCLICHRARIQQRADAGARLRMHafELQ 75
                6899***********995..899**************************944444 PP

  == domain 2  score: -3.9 bits;  conditional E-value: 1.5
                 HHHHHHHHHHHHH CS
       Nup54  81 hvelshRllrllr 93 
                 ++ +shR+  l++
  KOO23303.1 233 QTRISHRWSNLVC 245
                 5789999998886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (265 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       613  (0.0341904); expected 358.6 (0.02)
Passed bias filter:                      448  (0.0249875); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.39u 0.25s 00:00:00.64 Elapsed: 00:00:00.37
# Mc/sec: 2125.28
//
Query:       KOO23304.1  [L=334]
Description: hypothetical protein Ctob_000610 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
     0.0083   16.7   0.3      0.024   15.3   0.3    1.8  1  SlyX         SlyX
  ------ inclusion threshold ------
        2.3    6.6   3.3          3    6.3   3.3    1.1  1  RRN3         RNA polymerase I specific transcription initiati
        5.8    5.0   9.0        7.3    4.7   9.0    1.1  1  Nop14        Nop14-like family


Domain annotation for each model (and alignments):
>> SlyX  SlyX
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.3     4e-06     0.024       2      35 ..      73     106 ..      72     109 .. 0.93

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 4e-06
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
        SlyX   2 eerleeLEiklafqedtieeLndvvaeqqqqidr 35 
                 e+rl e E++ a +e+ i+eL +vv eq ++ +r
  KOO23304.1  73 ETRLHEVEEEFADLENPIDELREVVNEQTKRSER 106
                 78**************************998765 PP

>> RRN3  RNA polymerase I specific transcription initiation factor RRN3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.3   3.3    0.0005         3     236     296 ..      29     100 ..       2     132 .. 0.57

  Alignments for each domain:
  == domain 1  score: 6.3 bits;  conditional E-value: 0.0005
        RRN3 236 eddedddedd...........eesdlddlssdeeaeedee.kdeeeeslkkikelvekLDailtllfehlekk 296
                 ++de d+ed+           +  + +++++d ++e+++   + +e++l++++e  + L + ++ l e ++++
  KOO23304.1  29 DEDEGDEEDEgdwrdflmgirQRAEEEEDEDD-DQEDQDYvYAADETRLHEVEEEFADLENPIDELREVVNEQ 100
                 22222222334566667766422222222222.2222223355555677777777777777777666666662 PP

>> Nop14  Nop14-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.7   9.0    0.0012       7.3     320     386 ..      28      92 ..       7     138 .. 0.46

  Alignments for each domain:
  == domain 1  score: 4.7 bits;  conditional E-value: 0.0012
       Nop14 320 dddfvleeeeeeeefglgkglkataeeeeeededdfeedddlveseseeeeeeeeedeeeeedeeee 386
                 +d+ + +ee+e ++ ++  g++  ++ eeeededd++ed+d v   +e   +e ee+  + e+  +e
  KOO23304.1  28 EDEDEGDEEDEGDWRDFLMGIR--QRAEEEEDEDDDQEDQDYVYAADETRLHEVEEEFADLENPIDE 92 
                 2222222333333333334443..2223344444444444444444443332222222222222211 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (334 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1122  (0.0625802); expected 358.6 (0.02)
Passed bias filter:                      785  (0.0437838); expected 358.6 (0.02)
Passed Vit filter:                        89  (0.00496402); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.56u 0.30s 00:00:00.86 Elapsed: 00:00:00.44
# Mc/sec: 2300.06
//
Query:       KOO23305.1  [L=387]
Description: sam-dependent methyltransferase, partial [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    5.1e-28   98.1   0.2    1.1e-27   97.0   0.2    1.5  1  Methyltransf_32  Methyltransferase domain
    1.6e-06   28.0   0.1    3.4e-06   26.9   0.1    1.5  1  Methyltransf_31  Methyltransferase domain
    0.00032   20.3   1.3       0.38   10.2   0.2    3.7  4  TRM13            Methyltransferase TRM13
     0.0041   17.8   0.2      0.017   15.8   0.1    2.1  2  Methyltransf_25  Methyltransferase domain
  ------ inclusion threshold ------
       0.15   11.8   0.0       0.25   11.1   0.0    1.3  1  PCMT             Protein-L-isoaspartate(D-aspartate) O-methyl


Domain annotation for each model (and alignments):
>> Methyltransf_32  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   97.0   0.2   3.1e-31   1.1e-27      26     158 .]      45     214 ..      40     214 .. 0.94

  Alignments for each domain:
  == domain 1  score: 97.0 bits;  conditional E-value: 3.1e-31
  Methyltransf_32  26 altvvDvGaGkgYLsfvlal..kekeyklkvvgidakeelvekaekraeklgkkfnkrlsfaelsieeatssktltkkve.............. 103
                      +l++vD+G+G+gYL+f+ +    +k  +++ vg++++++lv++ +++a+ l   f + l+f+  s+++   ++ + ++++              
       KOO23305.1  45 RLRIVDAGCGRGYLTFAAHRffASKGWEVETVGVEMRSDLVAEMNQIAAGLD-GF-SGLRFECSSVAQFLGKAISGTQQHsnlsdqaisgtqqh 136
                      679****************99877789************************9.78.9***********99987776666589************ PP

  Methyltransf_32 104 .......................aeeekeeqeekesvdvligLHaCdtltdtalrlalekeakllvlvpCCyhelaee 158
                                             +++  + +++ ++ dvli+LHaCd +td+al+ ++++ a+++v++pCC++e++++
       KOO23305.1 137 sdlsdqaisgtqqhsdlsvapflDQRRVSARAKGSELDVLIALHACDIATDDALWCGITNGARIIVVAPCCHKEVRQQ 214
                      ***********************999999999*******************************************986 PP

>> Methyltransf_31  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.9   0.1   9.6e-10   3.4e-06       4      67 ..      45     113 ..      43     146 .. 0.87

  Alignments for each domain:
  == domain 1  score: 26.9 bits;  conditional E-value: 9.6e-10
  Methyltransf_31   4 glrvlDlGCGtGeltfelae...elgpkaevvGiDiseeaielArenaqkl.gldnveFeqgdiee.le 67 
                       lr++D+GCG G+ltf++++     g + e vG+++  + +  ++++a+ l g++ ++Fe +++ + l 
       KOO23305.1  45 RLRIVDAGCGRGYLTFAAHRffaSKGWEVETVGVEMRSDLVAEMNQIAAGLdGFSGLRFECSSVAQfLG 113
                      5799***************98877777999****************88754389999999999888665 PP

>> TRM13  Methyltransferase TRM13
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.8   0.0      0.04   1.4e+02      17      37 ..      43      63 ..      37      82 .. 0.79
   2 !   10.2   0.2   0.00011      0.38      99     143 ..     173     211 ..     147     223 .. 0.79
   3 !    3.8   0.0    0.0095        34     223     261 ..     247     285 ..     243     286 .. 0.91
   4 ?   -0.7   0.0      0.23   8.3e+02      19      40 ..     307     328 ..     297     348 .. 0.81

  Alignments for each domain:
  == domain 1  score: 1.8 bits;  conditional E-value: 0.04
       TRM13 17 ekssayvEfGaGkgelsryvn 37
                 ++  +v+ G+G+g+l+   +
  KOO23305.1 43 GQRLRIVDAGCGRGYLTFAAH 63
                56778999********97665 PP

  == domain 2  score: 10.2 bits;  conditional E-value: 0.00011
       TRM13  99 v.vavsKHLCGaATDLtLrcllnsekaskkakleglliAlCChhvC 143
                 + v ++ H C  ATD +L c + + +       + +++A CCh+  
  KOO23305.1 173 LdVLIALHACDIATDDALWCGITNGA-------RIIVVAPCCHKEV 211
                 2489999*************998777.......57********865 PP

  == domain 3  score: 3.8 bits;  conditional E-value: 0.0095
       TRM13 223 akrlidegRllalkekgfeaelvkYvekevslEnvlLla 261
                 a  + d  R+l l+  g+++++++++  e +  nv+L+a
  KOO23305.1 247 AEMVTDSLRALLLEIAGYDVSVFEFIGGEHTAKNVMLTA 285
                 56678999*****************************97 PP

  == domain 4  score: -0.7 bits;  conditional E-value: 0.23
       TRM13  19 ssayvEfGaGkgelsryvnqal 40 
                 ++  vEfG  +  l+r++ +al
  KOO23305.1 307 RQLCVEFGVERQALARWMGEAL 328
                 56789************98866 PP

>> Methyltransf_25  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.1   4.9e-06     0.017       1      55 [.      48     108 ..      48     115 .. 0.81
   2 ?   -2.3   0.0       2.1   7.5e+03      22      50 ..     287     313 ..     274     324 .. 0.68

  Alignments for each domain:
  == domain 1  score: 15.8 bits;  conditional E-value: 4.9e-06
                      EEEET-TTSHHHHHHHCTS...T.SSEEEEEESSHHHHHHHHHHHHH.TTT.TEEEEESBC CS
  Methyltransf_25   1 vLdlGcGtGrltlalakrl...g.kakvtgvDiseemleaareraee.egl.nvefvqgda 55 
                      ++d+GcG+G lt+a+++ +   g + + +gv++ +++++++++ a+  +g+  ++f++ ++
       KOO23305.1  48 IVDAGCGRGYLTFAAHRFFaskGwEVETVGVEMRSDLVAEMNQIAAGlDGFsGLRFECSSV 108
                      89************99998876589**************9999886544446666666655 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 2.1
                      SEEEEEESSHHHHHHHHHHHHHTTTTEEE CS
  Methyltransf_25  22 akvtgvDiseemleaareraeeeglnvef 50 
                      ++ +g +is + +e  r+r+++  l vef
       KOO23305.1 287 KRQIGREISGAEIEDLRARLRQ--LCVEF 313
                      5667778888888888888853..44554 PP

>> PCMT  Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   6.9e-05      0.25      75     114 ..      46      88 ..      41     104 .. 0.89

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 6.9e-05
                 -EEEEES-TTSHHHHHHHHHHCTTC...EEEEEESBHHHHHHH CS
        PCMT  75 arvLevGsGsGyltavlarlvgekg...rvvsierikelveea 114
                  r+++ G+G Gylt    r++ +kg     v++e   +lv+e 
  KOO23305.1  46 LRIVDAGCGRGYLTFAAHRFFASKGwevETVGVEMRSDLVAEM 88 
                 699*******************99988889******9999875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (387 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       453  (0.0252663); expected 358.6 (0.02)
Passed bias filter:                      338  (0.0188521); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.49u 0.24s 00:00:00.73 Elapsed: 00:00:00.41
# Mc/sec: 2803.95
//
Query:       KOO23306.1  [L=1650]
Description: transmembrane protein 131 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.5e-16   59.7   3.0    5.2e-16   58.7   0.1    3.2  4  TMEM131_like     Transmembrane protein 131-like
    0.00034   20.7   0.0      0.039   14.2   0.0    3.7  4  ASH              Abnormal spindle-like microcephaly-assoc'd, 
  ------ inclusion threshold ------
        7.2    6.4  12.4         14    5.4  12.4    1.5  1  Selenoprotein_S  Selenoprotein S (SelS)


Domain annotation for each model (and alignments):
>> TMEM131_like  Transmembrane protein 131-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.7   0.1   8.8e-20   5.2e-16       2      84 .]      40     123 ..      39     123 .. 0.96
   2 ?   -1.5   0.1      0.52   3.1e+03      17      60 ..     416     458 ..     411     463 .. 0.87
   3 ?   -3.1   0.0       1.7     1e+04      55      83 ..     755     783 ..     753     783 .. 0.90
   4 ?   -3.3   0.0       1.8   1.1e+04      63      80 ..    1133    1150 ..    1129    1152 .. 0.78

  Alignments for each domain:
  == domain 1  score: 58.7 bits;  conditional E-value: 8.8e-20
  TMEM131_like   2 eisPpeLdFges.slgkaasrtvtvvNkhkkeklkllsvtsdsiefqssffeevvlpPggntslkvvFLPrelGaseaslkllT 84 
                    ++Pp+L+Fg + +l+ ++  t +++N +++e+l++ sv+s+s +f++   e   lpPgg++++++vFLPr+ G+++++l ++T
    KOO23306.1  40 TVVPPVLNFGSEcPLCIPSIGTAELINLSEEEDLEVHSVSSQSEHFHAPLSELQRLPPGGRMNISIVFLPRAKGSVNTTLLIQT 123
                   679******96549********************************************************************99 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 0.52
  TMEM131_like  17 kaasrtvtvvNkhkkeklkllsvtsdsiefqssffeevvlpPgg 60 
                   +a+++ v + N h k  + ++   ++++  +   fe + ++Pg 
    KOO23306.1 416 NASNASVAITN-HFKVPVLMQRAYVNDPLVTLTRFEPAIVQPGA 458
                   57899999999.8889999999999999999999**99999986 PP

  == domain 3  score: -3.1 bits;  conditional E-value: 1.7
  TMEM131_like  55 vlpPggntslkvvFLPrelGaseaslkll 83 
                   v+pP+ ++ + v  + ++ G ++++l+++
    KOO23306.1 755 VIPPKARMVIAVDVIAQAAGLVDGTLVMH 783
                   899*******99999*******9999876 PP

  == domain 4  score: -3.3 bits;  conditional E-value: 1.8
  TMEM131_like   63 slkvvFLPrelGaseasl 80  
                     + + F P  lG+++  +
    KOO23306.1 1133 VVAIQFTPTRLGSFHSWF 1150
                    5778899*****999766 PP

>> ASH  Abnormal spindle-like microcephaly-assoc'd, ASPM-SPD-2-Hydin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.2   0.0   6.5e-06     0.039      35      91 ..      68     124 ..      61     127 .. 0.85
   2 ?   -3.0   0.0       1.4   8.7e+03      23      48 ..     155     180 ..     153     198 .. 0.74
   3 ?   -1.1   0.0      0.37   2.2e+03      12      41 ..     586     615 ..     576     621 .. 0.79
   4 ?    0.8   0.0     0.095   5.7e+02      65      91 ..    1129    1155 ..    1119    1161 .. 0.82

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 6.5e-06
                 -SS--EEEEEEEE--XXXXXXXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
         ASH  35 seepaevkvskvpaaekgfsveete.levqpgesvtltvtwtPteegavrevLqflvn 91 
                 see+  ++v  v+ ++ +f+ + +e  +++pg+++ +++++ P ++g+v+ +L + ++
  KOO23306.1  68 SEEE-DLEVHSVSSQSEHFHAPLSElQRLPPGGRMNISIVFLPRAKGSVNTTLLIQTS 124
                 5544.6677888889**********9**************************988765 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 1.4
                 EEEEEE-EEESS-SS--EEEEEEEE- CS
         ASH  23 ssaerlLtveNpseepaevkvskvpa 48 
                 s  e l+ ++Np+ +p+++k   +++
  KOO23306.1 155 SAYEPLISIRNPHGTPLQIKEVLSSE 180
                 556778999****9999988665555 PP

  == domain 3  score: -1.1 bits;  conditional E-value: 0.37
                 EEEEE-----EEEEEEE-EEESS-SS--EE CS
         ASH  12 pfvsFgdvkvGssaerlLtveNpseepaev 41 
                   + +++ + G  ++ lL ++Np++ +++v
  KOO23306.1 586 EVIHLEQLARGARKRVLLNMSNPNPVSLHV 615
                 5677888888999***********988766 PP

  == domain 4  score: 0.8 bits;  conditional E-value: 0.095
                  XXXXXXXXXXXXXXXXXXXXXXXXXXX CS
         ASH   65 gesvtltvtwtPteegavrevLqflvn 91  
                  +e+v++ +++tPt  g+ ++ + + +n
  KOO23306.1 1129 EETVVVAIQFTPTRLGSFHSWFYLRNN 1155
                  578899999999999998887776666 PP

>> Selenoprotein_S  Selenoprotein S (SelS)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.4  12.4    0.0024        14      78     163 ..    1429    1516 ..    1388    1534 .. 0.76

  Alignments for each domain:
  == domain 1  score: 5.4 bits;  conditional E-value: 0.0024
  Selenoprotein_S   78 vvkrqealeaaRlrmqeeldakaekfkekkkqleeekRrqkiemWesmkeGksykgkaklaqeeteetglsa...ssakkkkksdkkpL 163 
                       +++   a e aRl   +++ a+ae+ + + +   eek r + e   +m+e  +  ++a+ ++ee+e+ + ++     a +k +  k pL
       KOO23306.1 1429 EAEAHAAKEKARLEAEAKQRAQAEASEAEARAKREEKARLEAEAKRRMREAEAVAAEARAKREEEEA-AEAKrrfCEAEEKFRLAKEPL 1516
                       44455677889*****************************************999998877777444.443311133444444455555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1650 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1641  (0.0915277); expected 358.6 (0.02)
Passed bias filter:                      745  (0.0415528); expected 358.6 (0.02)
Passed Vit filter:                       161  (0.00897987); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 1.35u 0.34s 00:00:01.69 Elapsed: 00:00:00.50
# Mc/sec: 10005.54
//
Query:       KOO23307.1  [L=241]
Description: hypothetical protein Ctob_006722 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (241 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       271  (0.0151152); expected 358.6 (0.02)
Passed bias filter:                      195  (0.0108762); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.40u 0.26s 00:00:00.66 Elapsed: 00:00:00.42
# Mc/sec: 1717.66
//
Query:       KOO23308.1  [L=637]
Description: formin domain containing protein, partial [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.1e-48  164.8   0.0    1.3e-31  110.0   0.0    3.5  2  FH2       Formin Homology 2 Domain


Domain annotation for each model (and alignments):
>> FH2  Formin Homology 2 Domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.3   0.0   2.2e-17     4e-13      13     155 ..       1     229 [.       1     238 [. 0.94
   2 !  110.0   0.0   7.4e-36   1.3e-31     157     371 ..     295     498 ..     290     499 .. 0.88

  Alignments for each domain:
  == domain 1  score: 49.3 bits;  conditional E-value: 2.2e-17
                 -----EESSGGCTTSCCCCTCCHHHHC..................................................TSHHHHHHHHTBSC--HCCH.. CS
         FH2  13 plhWdkvkpsqdrstvWdklkeesfek..................................................eldlseleelFsakekkkkkkk 61 
                 plhW++v p+++ stvW+++ +e+f+                                                   +l+l ele++F    k   k++
  KOO23308.1   1 PLHWSRVPPAKVPSTVWATVWAEEFAIseprsprspkskdpteaglasaasmtnttaantsptsaavanphtlakmsDLNLIELEKVFGLPPKPDPKSE 99 
                 79************************9***************************************************************999888887 PP

                 ...............................HCSCCTTCCESSS-HHHHHHHHHHHHHHTS-HHHHHHHHHTTTTCCCT.........HHHHHHHHHHC CS
         FH2  62 s...........................ekskkskkkkkkvklLdpkrsqniaIlLkklkltaeeiveaileldeeald.........lellenLlkma 124
                 +                           + s+  +   + v+lL+++rs+n++I L++l+l++++i++ai +      d         +e+l +Ll m+
  KOO23308.1 100 RsaadaadggaadanglvtpkvpqplkrRGSGGGSGGVATVTLLSAQRSNNVEIALTRLRLSVQQIMDAISSPTG--ADggllprlanAETLGALLAMM 196
                 799***********************98888999999*********************************97655..33458889999*********** PP

                 GGHHHHHHHHCTCTS..GTTB-HHHHHHHHHTT CS
         FH2 125 Ptkeelkklkeykge..vseLseaeqFllelvk 155
                 Pt eel+ ++ +  +   + L++ e+F+l++++
  KOO23308.1 197 PTAEELDLIRGHVSSkgTAGLARVERFFLAVCE 229
                 *********877777789***********9987 PP

  == domain 2  score: 110.0 bits;  conditional E-value: 7.4e-36
                 TTHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHSTCSTTCS-SEE-GGGGGGCCCSB-STTTSBHHHHHHHHHHT CS
         FH2 157 prlekRleallfkstfeeeveelkrslealeaaseeLknskkfkklLeliLalGNymNdgtrrgqAkGFkLssLlkLsdvKstdnkttLLHylvkiire 255
                   +e+Rl+a+ +  +f+e++++l+    +l++a++++++s+k+++lL+++L +GNy+N++++rg A GF+L+ L+kL++v+s+d +ttLL y++k+ + 
  KOO23308.1 295 RTVEQRLRAMQVTLDFDEKCASLAAACLTLREACRQVRSSDKLRQLLQIVLGIGNYLNGSSARGGACGFRLEDLTKLKEVRSADLSTTLLSYVAKMPAV 393
                 6789********************************************************************************************666 PP

                 TSGGGGGHHHHTTTHHHCCTS-HHHHHHHHH.HHHHHHHHHHHHHHHCCTTSSTT-THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT--TT CS
         FH2 256 klpevldfsseLknvkkaakvnleslekevk.klekglkklekelessekkeepsdkflevlkeflkeaeeklkkleeelkeakelvkelveYfgedkk 353
                 + p +    ++Lk+      v+l s+++     +e++++++   ++  +   + +d ++  l  f++e + kl+ l ++   +++ +k+l+ +f e + 
  KOO23308.1 394 AAPGW---IKDLKE------VQLPSIAAARGlVMERRMSEATPVAKPPKP--STEDSLRVFLAYFVAEKQPKLEALTADVVAMESDFKALCSWFAEPP- 480
                 66654...234444......555555443321467778777777777766..999****************************************977. PP

                 CCHHHHHHHHHHHHHHHH CS
         FH2 354 evspeeffkilreFlkef 371
                 +++ e+ f  +++F++++
  KOO23308.1 481 TATAESTFGPIATFVQAL 498
                 79************9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (637 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       677  (0.0377601); expected 358.6 (0.02)
Passed bias filter:                      442  (0.0246528); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.61u 0.30s 00:00:00.90 Elapsed: 00:00:00.45
# Mc/sec: 4260.11
//
Query:       KOO23309.1  [L=223]
Description: proteasome subunit alpha type 7 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      9e-60  201.4   0.0    1.1e-59  201.1   0.0    1.1  1  Proteasome  Proteasome subunit
  ------ inclusion threshold ------
        1.9    8.9   4.2        4.4    7.7   4.2    1.6  1  KGG         Stress-induced bacterial acidophilic repeat motif


Domain annotation for each model (and alignments):
>> Proteasome  Proteasome subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  201.1   0.0   1.2e-63   1.1e-59       1     189 [.       4     185 ..       4     186 .. 0.98

  Alignments for each domain:
  == domain 1  score: 201.1 bits;  conditional E-value: 1.2e-63
                 HHHS-EEEEEEETTEEEEEEEEEEEETTEEEESSSSTSEEEEETTEEEEEEESHHHHHHHHHHHHHHHHHHHHHHSSGTCHHHHHHHHHHHHHHHHHHC CS
  Proteasome   1 vkkGttvvGikgkdgvvlaadkratagskllskstveKifkiddhigvafaGlaaDartlvrraraeaqlyrlrygrpipverlvarvaaklqaytqrs 99 
                 v+kGtt+vG+++ d++v+a+++++t  +kl++++tv+Ki+k+d++i+++faGl+aDar+l++rar e+q+yrl++++ ++ve+++++v+  +q+ytq++
  KOO23309.1   4 VRKGTTAVGVRSPDHIVFAVERKST--AKLQDPRTVRKIHKLDENIVLSFAGLTADARVLINRARIECQSYRLTFEDAPTVEHIAEYVSGIQQRYTQSG 100
                 679**********************..************************************************************************ PP

                 TTTTTSEEEEEEEEETTTEEEEEEEETTSEEEEESSEEEESTTHHHHHHHHHHHHSTTBSHHHHHHHHHHHHHHHHHHBTTSCSSEEEEE CS
  Proteasome 100 grrpfgvslliagvdeeggpeLyqidpsGsyieekdavaiGsgseaaktalekeykedltleeavelavkalkealerdklsgknievav 189
                 g+rpfg+s+li+g+d +g+p+Lyq++psG+ +++k ava+G +++ +k++lek+y  + t  ++v+la +al e++e   ++gknievav
  KOO23309.1 101 GVRPFGISTLIMGFDADGEPRLYQTEPSGNHTAWK-AVATGRNQKTVKEFLEKNY-NEETAVDGVKLACRALLEVVE---AGGKNIEVAV 185
                 **********************************8.*******************.66688899*************...99******98 PP

>> KGG  Stress-induced bacterial acidophilic repeat motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.7   4.2    0.0005       4.4       8      18 ..     212     222 ..     210     222 .. 0.92

  Alignments for each domain:
  == domain 1  score: 7.7 bits;  conditional E-value: 0.0005
         KGG   8 karEIGrKGGq 18 
                 ka+E+++KGG+
  KOO23309.1 212 KAAEAAAKGGK 222
                 9*********8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (223 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       571  (0.0318478); expected 358.6 (0.02)
Passed bias filter:                      458  (0.0255452); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.43u 0.25s 00:00:00.68 Elapsed: 00:00:00.41
# Mc/sec: 1633.53
//
Query:       KOO23310.1  [L=232]
Description: palmitoyltransferase zdhhc17 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.8e-13   49.7   6.1    3.8e-13   49.7   6.1    2.0  2  DHHC      DHHC palmitoyltransferase


Domain annotation for each model (and alignments):
>> DHHC  DHHC palmitoyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.6   0.8     0.031   5.6e+02      67      94 ..      55      82 ..      48     104 .. 0.34
   2 !   49.7   6.1   2.1e-17   3.8e-13       3      70 ..     143     217 ..     141     224 .. 0.84

  Alignments for each domain:
  == domain 1  score: 0.6 bits;  conditional E-value: 0.031
        DHHC 67 vlllialvklveeekkseflavtllkkl 94
                vl+li+l +   + ++++  ++t l+ +
  KOO23310.1 55 VLFLIFLFVAPMQAYANTQANLTMLQRA 82
                3333333333333333333333333322 PP

  == domain 2  score: 49.7 bits;  conditional E-value: 2.1e-17
        DHHC   3 kelkfCstcniykpp...rskHcrvCnrcvlrfDHhCpwlnnciGe....rNykyFllfllylllllilalvlll 70 
                 +++ fC  c +++p+   +++Hc++C+rcv++fDHhC +++ ci       N+ yF +++l+ +l +  ++ +++
  KOO23310.1 143 DGRVFCIRCLVWRPDdggNTHHCSTCQRCVCEFDHHCGVFGRCIAGdgcgGNMGYFKTLILMGVLGCGTCVSFMV 217
                 56789*********85557*************************7522227*****9999999999888776665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (232 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       737  (0.0411066); expected 358.6 (0.02)
Passed bias filter:                      328  (0.0182944); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.25s 00:00:00.69 Elapsed: 00:00:00.42
# Mc/sec: 1646.14
//
Query:       KOO23311.1  [L=70]
Description: hypothetical protein Ctob_000203 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (70 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       347  (0.0193541); expected 358.6 (0.02)
Passed bias filter:                      254  (0.014167); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.23s 00:00:00.59 Elapsed: 00:00:00.39
# Mc/sec: 534.58
//
Query:       KOO23312.1  [L=185]
Description: protein-tyrosine phosphatase mitochondrial 1 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.1e-09   38.2   0.0    1.5e-09   37.8   0.0    1.1  1  DSPc             Dual specificity phosphatase, catalytic doma
      6e-07   29.7   0.0    7.5e-07   29.4   0.0    1.2  1  PTPlike_phytase  Inositol hexakisphosphate
     0.0035   17.0   0.0     0.0043   16.7   0.0    1.1  1  Y_phosphatase    Protein-tyrosine phosphatase
  ------ inclusion threshold ------
      0.031   14.2   0.0      0.038   14.0   0.0    1.1  1  Y_phosphatase3   Tyrosine phosphatase family


Domain annotation for each model (and alignments):
>> DSPc  Dual specificity phosphatase, catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.8   0.0   3.3e-13   1.5e-09      19     100 ..     103     182 ..      91     184 .. 0.82

  Alignments for each domain:
  == domain 1  score: 37.8 bits;  conditional E-value: 3.3e-13
                 CSEEEEESSSSSECECCTTTTSEEEEECCESSTTSCCGGGHHHHHHHHHHHHHTT-EEEEEESSSSSHHHHHHHHHHHHHHT CS
        DSPc  19 itlvinvtkevpnanalkkseieklripvedehetkiskyleeavefidkakqkgkkvlVHCqaGisRSatliiaYlmktkn 100
                 +t  in   e + + ++   + ++lr+p  d + + ++++le+  +fi+  +  g++v+VHC+aG  R +t+ +aYlm++++
  KOO23312.1 103 VTGLINFCDEWEGHADYPRLGMRQLRLPTLD-YCAPTTQQLEAGLDFIRR-QPPGGSVYVHCKAGRGRAGTMLMAYLMDENG 182
                 5556666666665566777788888999888.99999***********97.5789***********************9875 PP

>> PTPlike_phytase  Inositol hexakisphosphate
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.4   0.0   1.7e-10   7.5e-07      98     154 ..     122     178 ..      92     179 .. 0.91

  Alignments for each domain:
  == domain 1  score: 29.4 bits;  conditional E-value: 1.7e-10
                      TT-EEEEEEE-TTS---HHHHHHHHHHHHTS-TT-EEEEE-SSSSHHHHHHHHHHHH CS
  PTPlike_phytase  98 lslrYaRipitdekapeeedfdalvsilkeapektalvfnCqmGrgRTTtamviatL 154
                      l++r  R+p  d +ap+ ++++a ++++++ p   ++ ++C++GrgR  t+++++ +
       KOO23312.1 122 LGMRQLRLPTLDYCAPTTQQLEAGLDFIRRQPPGGSVYVHCKAGRGRAGTMLMAYLM 178
                      577889*************************99***************998877765 PP

>> Y_phosphatase  Protein-tyrosine phosphatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.0   9.6e-07    0.0043     167     192 ..     152     177 ..     107     182 .. 0.77

  Alignments for each domain:
  == domain 1  score: 16.7 bits;  conditional E-value: 9.6e-07
                    STTSS-EEEECSSSSHHHHHHHHHHH CS
  Y_phosphatase 167 eaksgpvvVhCsaGvgRtgtfvaldi 192
                    ++  g+v VhC+aG gR+gt++++ +
     KOO23312.1 152 QPPGGSVYVHCKAGRGRAGTMLMAYL 177
                    457899**************988755 PP

>> Y_phosphatase3  Tyrosine phosphatase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.0   8.4e-06     0.038     106     142 ..     138     177 ..      91     180 .. 0.83

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 8.4e-06
  Y_phosphatase3 106 akkayrkvfealadee...pvlfHCtaGKDRTGvlaalll 142
                      ++++++ ++ +++++   +v +HC aG+ R G + +  l
      KOO23312.1 138 TTQQLEAGLDFIRRQPpggSVYVHCKAGRGRAGTMLMAYL 177
                     567778888999994458999************9988665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (185 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       268  (0.0149478); expected 358.6 (0.02)
Passed bias filter:                      246  (0.0137208); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.39u 0.23s 00:00:00.62 Elapsed: 00:00:00.38
# Mc/sec: 1453.92
//
Query:       KOO23313.1  [L=82]
Description: hypothetical protein Ctob_000205 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (82 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       162  (0.00903564); expected 358.6 (0.02)
Passed bias filter:                      101  (0.00563333); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.25s 00:00:00.56 Elapsed: 00:00:00.38
# Mc/sec: 654.19
//
Query:       KOO23314.1  [L=167]
Description: hypothetical protein Ctob_000206 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (167 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       444  (0.0247643); expected 358.6 (0.02)
Passed bias filter:                      301  (0.0167884); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.22s 00:00:00.60 Elapsed: 00:00:00.37
# Mc/sec: 1353.67
//
Query:       KOO23315.1  [L=309]
Description: mannose-6-phosphate cation dependent [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.3e-10   39.5   0.2      5e-10   38.9   0.2    1.2  1  Man-6-P_recep  Mannose-6-phosphate receptor
      6e-06   26.3   0.0      7e-06   26.1   0.0    1.2  1  ATG27          Autophagy-related protein 27


Domain annotation for each model (and alignments):
>> Man-6-P_recep  Mannose-6-phosphate receptor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.9   0.2   5.6e-14     5e-10     144     225 ..     192     275 ..     172     289 .. 0.86

  Alignments for each domain:
  == domain 1  score: 38.9 bits;  conditional E-value: 5.6e-14
  Man-6-P_recep 144 cfylfeldssvaCpke.esklsvGsillivllslvavyligGflyqrlvvgak.GleqiPnyafWqdlGnlvadGCdfvCrsks 225
                      y+ ++   +aC +   + +s+G i+li+l  l  +y++gG +y+  +vg k Gl  +P+ ++W+ l  lv dGC+++  +  
     KOO23315.1 192 LQYVITFSGAAACGVLwVKPMSIGWIILITLPVLFLLYVVGGCIYNVKLVGKKpGLTAFPQIQYWKMLPGLVKDGCNYTYVTLR 275
                    5699999999***8752578*************************988888877***********************9866555 PP

>> ATG27  Autophagy-related protein 27
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.1   0.0   7.8e-10     7e-06     132     257 ..     164     275 ..      99     285 .. 0.75

  Alignments for each domain:
  == domain 1  score: 26.1 bits;  conditional E-value: 7.8e-10
       ATG27 132 ygkkkqkaiieflCdekslkfksydeeeeeekdvlrlewktkyACekaekdkkdsskkkeksgwGfFtwlfiilflataaYlifgswlNynryGar.gw 229
                  ++ +++++i ++C   + ++++ d+     +  + +++++ +AC     ++          ++G+  +++i l +++++Y ++g ++N++  G + g 
  KOO23315.1 164 DKSLERRVDIIYTCAPGNPTVQGQDQ----GSLQYVITFSGAAACGVLWVKP---------MSIGW--IILITLPVLFLLYVVGGCIYNVKLVGKKpGL 247
                 45556666666666322223222222....2344666666666666443322.........689*9..777888888888**************999** PP

       ATG27 230 DllphgdtirdlPyllkDvvrkvlgtvq 257
                  ++p+ + ++ lP l+kD+ +    t++
  KOO23315.1 248 TAFPQIQYWKMLPGLVKDGCNYTYVTLR 275
                 ******************9987766665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (309 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       386  (0.0215294); expected 358.6 (0.02)
Passed bias filter:                      299  (0.0166769); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.44u 0.21s 00:00:00.65 Elapsed: 00:00:00.38
# Mc/sec: 2426.76
//
Query:       KOO23316.1  [L=950]
Description: coiled-coil domain-containing protein 147-like protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
     0.0005   20.6  19.1     0.0005   20.6  19.1    7.8  7  APG6_N    Apg6 coiled-coil region


Domain annotation for each model (and alignments):
>> APG6_N  Apg6 coiled-coil region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.4  12.9     0.048   8.7e+02      20      85 ..      66     166 ..      54     182 .. 0.63
   2 !    6.4  18.2   0.00069        12      36     131 ..     180     275 ..     173     277 .. 0.87
   3 !   20.6  19.1   2.8e-08    0.0005      11     129 ..     291     427 ..     288     429 .. 0.94
   4 !   14.8  12.3   1.7e-06      0.03      11     132 ..     438     556 ..     436     557 .. 0.91
   5 !    6.9  15.5   0.00049       8.8      14     130 ..     553     666 ..     550     669 .. 0.85
   6 ?   -0.7   8.2      0.11   1.9e+03      47     109 ..     681     746 ..     662     766 .. 0.61
   7 ?   -2.7   7.8      0.45     8e+03      80     121 ..     811     852 ..     746     861 .. 0.49

  Alignments for each domain:
  == domain 1  score: 0.4 bits;  conditional E-value: 0.048
      APG6_N  20 qaekerdaYeeflkklkkekkeeek...................................qdeeleeleeeleklekeeeelleeLkelekereeleae 83 
                 q+e+ r +Ye+  + lkk++++e++                                    ++++ ++   +e+   +e++  eeL++l  e eel++e
  KOO23316.1  66 QLERFRLEYETLYRALKKSHESEKRlvkkcrelvtditgtknktenavklsaedqtmiaqLRTDIVRTSTAVETSLLKEKDTKEELEQLRIEIEELRQE 164
                 566667778888888888877776677788888888887777766666666664444444444444444445555555555555555555555555555 PP

      APG6_N  84 la 85 
                 ++
  KOO23316.1 165 VK 166
                 54 PP

  == domain 2  score: 6.4 bits;  conditional E-value: 0.00069
      APG6_N  36 kkekkeeekqdeeleeleeeleklekeeeelleeLkelekereeleaelaaleeelealeeeeerfwreynelqlelleleeeldsleaqyehaqn 131
                 ++  ++++++  e +++ + + +l++e  +l e Lk +++e+ + + e+a+l++e +++ +  +++ r+  + + +l+el+  l++ +a++++ q+
  KOO23316.1 180 RDLITTKDETAREAAAAAHHVTQLRAEIMDLTERLKLVDAEKLKSDGEVAELKREIDEKRAATDKERRRKEAAEAKLKELKAVLEQRAAELRQKQE 275
                 44444444456799999999************************************************************9999999999988876 PP

  == domain 3  score: 20.6 bits;  conditional E-value: 2.8e-08
      APG6_N  11 leeldkqleqaekerdaYeeflkklkkekkeeek..................qdeeleeleeeleklekeeeelleeLkelekereeleaelaaleeel 91 
                 l e ++  ++a ke+daY    +kl +e ke+ +                  ++ee ++l+ e +++ + +++l++ +++le++ +e +a l++l++e 
  KOO23316.1 291 LREQKQTTDRALKEMDAYVGKVAKLSDELKEQVTrnasvasecrvkvadiasKNEENAALQVETKRICDLKDKLQKRIDQLEAQTAETNASLHKLTQEI 389
                 6688999*******************99766544999***************99999****************************************** PP

      APG6_N  92 ealeeeeerfwreynelqlelleleeeldsleaqyeha 129
                 + ++ e +++ re+   + +  +l  e++ l+ ++  a
  KOO23316.1 390 AMMDVEITKEKRERETERKQTDDLSREREILNKNLVKA 427
                 *****************************999887766 PP

  == domain 4  score: 14.8 bits;  conditional E-value: 1.7e-06
      APG6_N  11 leeldkqleqaekerdaYeeflkklkkekkeeekqdeeleeleeeleklekeeeelleeLkelekereeleaelaaleeelealeeeeerfwreynelq 109
                 + + ++  +++e e+  Y++    l ++ k+ +    e ++   e ++  +  +++l   ke e +  +l++++a+ e++l++ ++  e+  +++n ++
  KOO23316.1 438 IRTQENTKANLEVEIAGYRTTAGDLGRQIKKLT---AEKDKYSAEAQDAADRYAQALDAVKEREINVLQLQKKIAEGEAKLKQQQNLYEAVRSDRNLYA 533
                 566666777888999999999999999988866...688999********************************************************* PP

      APG6_N 110 lelleleeeldsleaqyehaqnq 132
                  +l+e ++e + ++ +++  ++q
  KOO23316.1 534 KNLIESQDEIAEMKRKFKVMTRQ 556
                 ****************9999887 PP

  == domain 5  score: 6.9 bits;  conditional E-value: 0.00049
      APG6_N  14 ldkqleqaekerdaYeeflkklkkekkeeekqdeeleeleeeleklekeeeelleeLkelekereeleaelaaleeelealeeeeerfwreynelqlel 112
                 +++q+eq+++e+++  + l + + ek +     +++e+l+e l ++ k+ee++ +e k  ++e ++l++ ++++e+e ++ ++e e  ++e+  l ++l
  KOO23316.1 553 MTRQIEQLKDEIQTKDTSLVREHFEKMK---VVQDRESLRELLNNTLKKEEDMAREEKLFKAEVAKLNQIINEAEAERSKQQKEFEVVVNERDILGTQL 648
                 6677777777777766666544444334...346999************************************************************** PP

      APG6_N 113 leleeeldsleaqyehaq 130
                 ++ ++el +l  +++ +q
  KOO23316.1 649 IRRNDELSALYEKIKLQQ 666
                 ********9988887665 PP

  == domain 6  score: -0.7 bits;  conditional E-value: 0.11
      APG6_N  47 eeleeleeeleklekeeeelle...eLkelekereeleaelaaleeelealeeeeerfwreynelq 109
                  + ++l ++++ l++e  +l +   +L++l +e  +l++el   + + +al ee e+ ++ ++  +
  KOO23316.1 681 GDQQALLKDVQLLRSELFALKSsilNLEALRNETFALNRELLHERTKVRALSEELENQMNVHRWRK 746
                 456677777777777765555511145555555556666666666666666666666555544444 PP

  == domain 7  score: -2.7 bits;  conditional E-value: 0.45
      APG6_N  80 leaelaaleeelealeeeeerfwreynelqlelleleeelds 121
                  +a la+ +++l+ +  e   + ++ n+l+++++ l  + ++
  KOO23316.1 811 YQANLAEKTKQLKSMSSELILHRQQCNDLKIDQEALAGKIAQ 852
                 223333333333333333333333333344433333333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (950 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2976  (0.165988); expected 358.6 (0.02)
Passed bias filter:                      509  (0.0283898); expected 358.6 (0.02)
Passed Vit filter:                       139  (0.0077528); expected 17.9 (0.001)
Passed Fwd filter:                        60  (0.00334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 2.29u 0.37s 00:00:02.66 Elapsed: 00:00:00.69
# Mc/sec: 4175.35
//
Query:       KOO23317.1  [L=180]
Description: DNAj-like subfamily b member 6-like isoform 1 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.7e-28   96.8   1.1      1e-27   96.0   1.1    1.4  1  DnaJ      DnaJ domain
  ------ inclusion threshold ------
       0.13   12.2   0.0       0.23   11.4   0.0    1.4  1  RPT       A repeated domain in UCH-protein


Domain annotation for each model (and alignments):
>> DnaJ  DnaJ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   96.0   1.1   1.1e-31     1e-27       1      63 []       4      67 ..       4      67 .. 0.98

  Alignments for each domain:
  == domain 1  score: 96.0 bits;  conditional E-value: 1.1e-31
                HHHHHHTSSTTG-HHHHHHHHHHHHHHHSTTTSCCHH.HHHHHHHHHHHHHHHHTSHHHHHHHH CS
        DnaJ  1 dyYeiLgvskdasedeIkkaYrklalkyHPDknpkdp.eaeekFkeineAyevLsdpekRkqYD 63
                +yYe Lgvs+ ase+eIkkaYrkla+k+HPDknp+ + eae kFk i+eAy+vLs+pekR++YD
  KOO23317.1  4 TYYEELGVSRGASEAEIKKAYRKLAIKWHPDKNPEARdEAEAKFKSIAEAYDVLSNPEKRAAYD 67
                69*******************************99999*************************9 PP

>> RPT  A repeated domain in UCH-protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   2.5e-05      0.23       6      48 ..       6      53 ..       4      55 .. 0.88

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 2.5e-05
         RPT  6 yklLgidentdDdviitayqvkl.....eddpsqkdklrrALkvIAee 48
                y++Lg+++ +++ +i +ay+        +++p+ +d++ + +k+IAe+
  KOO23317.1  6 YEELGVSRGASEAEIKKAYRKLAikwhpDKNPEARDEAEAKFKSIAEA 53
                99*****************95435557666****************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (180 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       543  (0.0302861); expected 358.6 (0.02)
Passed bias filter:                      358  (0.0199677); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.39u 0.26s 00:00:00.65 Elapsed: 00:00:00.41
# Mc/sec: 1308.28
//
Query:       KOO23318.1  [L=1897]
Description: protein nlrc3 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.4e-10   38.8   7.8       0.16   12.1   0.6    8.1  9  LRR_6     Leucine Rich repeat
     0.0058   16.6   0.0      0.019   14.9   0.0    1.9  1  PAS       PAS fold
  ------ inclusion threshold ------
      0.049   13.9   0.1       0.35   11.1   0.0    2.6  2  PAS_4     PAS fold


Domain annotation for each model (and alignments):
>> LRR_6  Leucine Rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.0       1.3   7.9e+03       2      13 ..    1140    1151 ..    1139    1152 .. 0.88
   2 ?    1.1   0.0     0.088   5.2e+02       5      23 ..    1616    1634 ..    1614    1635 .. 0.78
   3 ?    0.8   0.0      0.11   6.7e+02       5      20 ..    1645    1660 ..    1643    1660 .. 0.91
   4 ?    3.8   0.0     0.013        76       7      17 ..    1675    1685 ..    1671    1690 .. 0.83
   5 ?   -2.0   0.0       0.9   5.3e+03       5      16 ..    1701    1712 ..    1698    1712 .. 0.87
   6 ?    1.7   0.0     0.057   3.4e+02       2      18 ..    1739    1755 ..    1738    1761 .. 0.83
   7 ?    1.6   0.0     0.061   3.6e+02       2      20 ..    1767    1785 ..    1766    1787 .. 0.89
   8 !   12.1   0.6   2.6e-05      0.16       4      24 .]    1798    1818 ..    1796    1818 .. 0.91
   9 !   11.8   0.1   3.3e-05       0.2       2      23 ..    1852    1873 ..    1851    1874 .. 0.94

  Alignments for each domain:
  == domain 1  score: -2.5 bits;  conditional E-value: 1.3
       LRR_6    2 nthLteLdLsgN 13  
                  +t L+ L L+g+
  KOO23318.1 1140 STFLRQLGLRGC 1151
                  789*******99 PP

  == domain 2  score: 1.1 bits;  conditional E-value: 0.088
       LRR_6    5 LteLdLsgNdIgDeGaeaL 23  
                   t+Ld+s N ++   aeaL
  KOO23318.1 1616 TTALDVSKNALSPPLAEAL 1634
                  589******9987666555 PP

  == domain 3  score: 0.8 bits;  conditional E-value: 0.11
       LRR_6    5 LteLdLsgNdIgDeGa 20  
                  ++ L L  + +g eG+
  KOO23318.1 1645 VRRLRLERCTLGAEGV 1660
                  589************7 PP

  == domain 4  score: 3.8 bits;  conditional E-value: 0.013
       LRR_6    7 eLdLsgNdIgD 17  
                   +dLs+N+Ig+
  KOO23318.1 1675 DVDLSHNGIGG 1685
                  58*******97 PP

  == domain 5  score: -2.0 bits;  conditional E-value: 0.9
       LRR_6    5 LteLdLsgNdIg 16  
                  L+ L L++N +g
  KOO23318.1 1701 LERLVLTSNPLG 1712
                  999******987 PP

  == domain 6  score: 1.7 bits;  conditional E-value: 0.057
       LRR_6    2 nthLteLdLsgNdIgDe 18  
                  + +L+eL+L++ ++g +
  KOO23318.1 1739 SKSLKELQLRDAGLGPS 1755
                  679********999975 PP

  == domain 7  score: 1.6 bits;  conditional E-value: 0.061
       LRR_6    2 nthLteLdLsgNdIgDeGa 20  
                  +++L++L+L  N +g +G+
  KOO23318.1 1767 HRSLETLSLWKNRLGASGG 1785
                  589*************997 PP

  == domain 8  score: 12.1 bits;  conditional E-value: 2.6e-05
       LRR_6    4 hLteLdLsgNdIgDeGaeaLa 24  
                  +Lt LdL+gN+++De + aLa
  KOO23318.1 1798 SLTCLDLRGNHLDDECGVALA 1818
                  7**************888887 PP

  == domain 9  score: 11.8 bits;  conditional E-value: 3.3e-05
       LRR_6    2 nthLteLdLsgNdIgDeGaeaL 23  
                  n+ Lt+Ld++gN+++ + ++aL
  KOO23318.1 1852 NSVLTALDVRGNQLDADALKAL 1873
                  899****************998 PP

>> PAS  PAS fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.0   3.3e-06     0.019      15     106 ..     885     980 ..     880     984 .. 0.79

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 3.3e-06
                 EEEETTSBEEEECHHHHHHHSSTHHHCTTSBGGGGBSTTHHH..HHHHHHHHHHHHTT-ECCCCEEEEC.....TTSSEEEEEEEEEEEEETTEEEEEE CS
         PAS  15 fvvDedgrilyvNaaaeellGlsreevlgkslldliheedda..elaelleqlleqgeesrageisfkl.....rdgrpihlevraspvrdaggeilgf 106
                  ++D++gr++ + a ae+l+Gl+++ + g++   ++   +d+   + e   +  ++ge + +  +s+++       + ++ + +  +pv++a++   g+
  KOO23318.1 885 AAIDAQGRVVTWGARAEQLTGLPAKAAHGQPWASVLLAGTDDmiMDSESHANKVLAGEAEGNAYVSICTpirdaHGNPTVVAPMLIRPVTSAEH---GA 980
                 589****************************999998888888888888888889999999999999998877444445555666666666655...55 PP

>> PAS_4  PAS fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   5.9e-05      0.35       7      63 ..     883     942 ..     879     976 .. 0.82
   2 ?   -4.1   0.0         3   1.8e+04      44      71 ..    1626    1653 ..    1616    1660 .. 0.77

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 5.9e-05
       PAS_4   7 alavldpdgrvlyaNaaaaelfgappeellGktlaellpee...daarleralrrvlege 63 
                 +la++d++grv+ + a+a++l g+p++++ G+++a++l ++      + e++ ++vl+ge
  KOO23318.1 883 ILAAIDAQGRVVTWGARAEQLTGLPAKAAHGQPWASVLLAGtddMIMDSESHANKVLAGE 942
                 57899*******************************998875554455555566666665 PP

  == domain 2  score: -4.1 bits;  conditional E-value: 3
       PAS_4   44 lpeedaarleralrrvlegeepieflee 71  
                  l++++a++l+ral r+ +g ++++ + +
  KOO23318.1 1626 LSPPLAEALCRALVRAGSGVRRLRLERC 1653
                  5667999999999999888777776665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1897 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       640  (0.0356964); expected 358.6 (0.02)
Passed bias filter:                      380  (0.0211947); expected 358.6 (0.02)
Passed Vit filter:                        59  (0.00329076); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 1.00u 0.30s 00:00:01.30 Elapsed: 00:00:00.48
# Mc/sec: 11856.17
//
Query:       KOO23319.1  [L=640]
Description: hypothetical protein Ctob_000220 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    2.4e-28   97.7   0.6    2.8e-10   39.9   0.0    3.6  3  PDZ_6        PDZ domain
    1.7e-18   66.8   0.0      1e-05   25.8   0.0    3.4  3  PDZ          PDZ domain
    5.9e-18   65.0   0.3    7.6e-05   23.0   0.0    3.4  3  PDZ_2        PDZ domain
    6.1e-12   44.2   0.8    2.5e-05   23.5   0.2    2.5  2  EF-hand_1    EF hand
    1.7e-09   36.8   0.4    0.00016   21.3   0.1    2.5  2  EF-hand_6    EF-hand domain
    1.9e-08   34.6   0.2    3.6e-08   33.7   0.2    1.5  1  EF-hand_7    EF-hand domain pair
      3e-07   30.2   0.3    2.6e-05   24.0   0.0    2.7  2  EF-hand_8    EF-hand domain pair
    7.6e-07   28.4   2.2     0.0024   17.3   0.5    2.4  2  EF-hand_5    EF hand
    7.3e-06   25.9   0.1        1.3    9.1   0.0    3.5  3  Tricorn_PDZ  Tricorn protease PDZ domain
    0.00035   21.4   0.1     0.0013   19.6   0.1    1.9  2  EF-hand_11   EF-hand domain
  ------ inclusion threshold ------
        0.1   12.2   0.0       0.29   10.8   0.0    1.7  1  DUF1918      Domain of unknown function (DUF1918)


Domain annotation for each model (and alignments):
>> PDZ_6  PDZ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.9   0.0   1.7e-13   2.8e-10       4      53 ..      36      85 ..      34      90 .. 0.84
   2 !   27.7   0.0   1.1e-09   1.8e-06       4      37 ..     198     230 ..     195     237 .. 0.87
   3 !   26.5   0.1   2.7e-09   4.4e-06       2      56 .]     446     499 ..     445     499 .. 0.91

  Alignments for each domain:
  == domain 1  score: 39.9 bits;  conditional E-value: 1.7e-13
       PDZ_6  4 aVdpgsPAdrAG.lrvGDiilsvNGqpveglsladvaallrgsagesvvlv 53
                ++ +g+PA+r+G lr GD+++++NG+pv+++s + + ++l  +   +++++
  KOO23319.1 36 SIAEGTPAMRCGqLRKGDRVVAINGVPVRHQSDTSYLDILS-ALKDATTVT 85
                7889******************************9999997.555555544 PP

  == domain 2  score: 27.7 bits;  conditional E-value: 1.1e-09
       PDZ_6   4 aVdpgsPAdrAG.lrvGDiilsvNGqpveglslad 37 
                 a+ +++PA+r+G lr+GD++ +++G+pv   s   
  KOO23319.1 198 AIGEDTPAMRCGrLRIGDRVMAIDGVPV--SSASN 230
                 77899***********************..77665 PP

  == domain 3  score: 26.5 bits;  conditional E-value: 2.7e-09
       PDZ_6   2 VtaVdpgsPAdrAG..lrvGDiilsvNGqpveglsladvaallrgsagesvvlvvrr 56 
                 V a++pgsPA+     l+++D++l+v+G+pv     +d+a+ll      +vv++v r
  KOO23319.1 446 VLAIKPGSPAAYSDprLEINDRLLAVGGRPV--AEDTDFAELLT-TDKLRVVIKVVR 499
                 7799*********99****************..**********9.777777777766 PP

>> PDZ  PDZ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.8   0.0   6.2e-09     1e-05       4      74 ..      13      79 ..      10      88 .. 0.69
   2 !   16.9   0.0   3.7e-06    0.0061       3      62 ..     173     229 ..     171     237 .. 0.76
   3 !   20.0   0.0     4e-07   0.00065       8      60 ..     429     478 ..     422     496 .. 0.82

  Alignments for each domain:
  == domain 1  score: 25.8 bits;  conditional E-value: 6.2e-09
                EETSTTSESSEEEEEETTSSSSSSEEEEEECTTSHHHHHT.SSTTEEEEEETTEETTTSHHHHHHHHHHTTT CS
         PDZ  4 lekegrgglGfslkggsdqrgdkgifvsevlpggaaeadg.lkvGDkIlsvNgvdvenvsheeavqaikgsk 74
                le++  +g+G+ l    d    + +  s++ +g +a + g l++GD+++++Ngv+v+  s++   + +   k
  KOO23319.1 13 LERDPYEGFGLGLGF--DG---TAVLLSSIAEGTPAMRCGqLRKGDRVVAINGVPVRHQSDTSYLDILSALK 79
                555544444444444..33...58999******88888888************9999887766555555544 PP

  == domain 2  score: 16.9 bits;  conditional E-value: 3.7e-06
                 EEETSTTSESSEEEEEETTSSSSSSEEEEEECTTSHHHHHT.SSTTEEEEEETTEETTTSH CS
         PDZ   3 slekegrgglGfslkggsdqrgdkgifvsevlpggaaeadg.lkvGDkIlsvNgvdvenvs 62 
                 +le++  +g+G+ l  +        +  s + ++ +a + g l++GD++++++gv+v++ s
  KOO23319.1 173 TLERDPYEGFGLGLGFDGG----DVVTLSAIGEDTPAMRCGrLRIGDRVMAIDGVPVSSAS 229
                 5666644555555554444....3689999999988888888***************9986 PP

  == domain 3  score: 20.0 bits;  conditional E-value: 4e-07
                 TTSESSEEEEEETTSSSSSSEEEEEECTT.SHHHHHT.SSTTEEEEEETTEETTT CS
         PDZ   8 grgglGfslkggsdqrgdkgifvsevlpg.gaaeadg.lkvGDkIlsvNgvdven 60 
                 + ++lG+ +  ++       + v  + pg +aa  d+ l+++D++l+v+g++v++
  KOO23319.1 429 KDESLGLGVGFQDG-----AVLVLAIKPGsPAAYSDPrLEINDRLLAVGGRPVAE 478
                 56666666665444.....799*****************************9975 PP

>> PDZ_2  PDZ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.0   0.0   4.6e-08   7.6e-05      15      71 ..      31      90 ..      11     101 .. 0.84
   2 !   15.6   0.0   9.3e-06     0.015      16      51 ..     194     230 ..     171     249 .. 0.83
   3 !   22.4   0.0   7.2e-08   0.00012       4      60 ..     434     490 ..     431     503 .. 0.84

  Alignments for each domain:
  == domain 1  score: 23.0 bits;  conditional E-value: 4.6e-08
                -EEEEEE-TTSGGGGT..--TT-EEEEETTB--..SSHHHHHHHHHTS-TT-EEEEEEEE CS
       PDZ_2 15 gvlvvsVkeggPaakag.lkagDvilkvdgkkv..ksledlislllkkkpGdtVkltvlR 71
                 vl  s+ eg+Pa + g l++gD++++++g++v  +s+++    l++ k  +tV++ ++R
  KOO23319.1 31 AVLLSSIAEGTPAMRCGqLRKGDRVVAINGVPVrhQSDTSYLDILSALKDATTVTFVLTR 90
                456678***************************767777777888899999999999988 PP

  == domain 2  score: 15.6 bits;  conditional E-value: 9.3e-06
                 EEEEEE-TTSGGGGT..--TT-EEEEETTB--SSHHH CS
       PDZ_2  16 vlvvsVkeggPaakag.lkagDvilkvdgkkvksled 51 
                 v+   + e++Pa + g l++gD+++++dg++v+s ++
  KOO23319.1 194 VTLSAIGEDTPAMRCGrLRIGDRVMAIDGVPVSSASN 230
                 44445999************************98776 PP

  == domain 3  score: 22.4 bits;  conditional E-value: 7.2e-08
                 .XX------..-EEEEEE-TTSGGGGT...--TT-EEEEETTB--SSHHHHHHHHHTS- CS
       PDZ_2   4 GvsvsdeedtggvlvvsVkeggPaakag..lkagDvilkvdgkkvksledlislllkkk 60 
                 G  v  +++   vlv  +k+g+Paa ++  l+++D++l+v+g++v +++d+ +ll + k
  KOO23319.1 434 GLGVGFQDG--AVLVLAIKPGSPAAYSDprLEINDRLLAVGGRPVAEDTDFAELLTTDK 490
                 555556666..89**************999***********************998766 PP

>> EF-hand_1  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.5   0.2   1.5e-08   2.5e-05       2      29 .]     519     546 ..     518     546 .. 0.93
   2 !   18.8   0.0   4.8e-07   0.00078       1      26 [.     554     579 ..     554     581 .. 0.91

  Alignments for each domain:
  == domain 1  score: 23.5 bits;  conditional E-value: 1.5e-08
                 HHHHHHHHTTTSSSEEEHHHHHHHHHHH CS
   EF-hand_1   2 lkeiFrefDkDgdGkIdfeEfkellkkl 29 
                 + +iFr fD+D +G+I+++Ef+ +l+k+
  KOO23319.1 519 IIDIFRAFDQDLSGQIEKQEFRLVLRKM 546
                 679**********************986 PP

  == domain 2  score: 18.8 bits;  conditional E-value: 4.8e-07
                 HHHHHHHHHTTTSSSEEEHHHHHHHH CS
   EF-hand_1   1 elkeiFrefDkDgdGkIdfeEfkell 26 
                 e + +F+ +D+D++G ++++E++e +
  KOO23319.1 554 EADAAFDSLDQDRSGSLNYQELCERF 579
                 6799*******************876 PP

>> EF-hand_6  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.3   0.1   9.7e-08   0.00016       2      28 ..     519     545 ..     518     551 .. 0.92
   2 !   13.2   0.0   4.1e-05     0.066       3      23 ..     556     576 ..     554     581 .. 0.88

  Alignments for each domain:
  == domain 1  score: 21.3 bits;  conditional E-value: 9.7e-08
   EF-hand_6   2 lreaFklfDkdgdGkidaeElrkalrk 28 
                 + ++F++fD+d +G+i ++E+r +lrk
  KOO23319.1 519 IIDIFRAFDQDLSGQIEKQEFRLVLRK 545
                 789**********************95 PP

  == domain 2  score: 13.2 bits;  conditional E-value: 4.1e-05
   EF-hand_6   3 reaFklfDkdgdGkidaeElr 23 
                 ++aF+ +D+d++G+++++El 
  KOO23319.1 556 DAAFDSLDQDRSGSLNYQELC 576
                 689****************96 PP

>> EF-hand_7  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.7   0.2   2.2e-11   3.6e-08       3      70 ..     518     579 ..     516     580 .. 0.91

  Alignments for each domain:
  == domain 1  score: 33.7 bits;  conditional E-value: 2.2e-11
   EF-hand_7   3 klkeaFkelDtdgdgyldkeellrllrkifqgagegsklsdeelellfkefDtdkdGvisfdEFlkly 70 
                 ++ ++F+++D+d +g ++k+e++ +lr          + ++ e ++ f+ +D+d++G+++++E+++ +
  KOO23319.1 518 RIIDIFRAFDQDLSGQIEKQEFRLVLR------KMVIVATSAEADAAFDSLDQDRSGSLNYQELCERF 579
                 78899******************8999......666666999***********************987 PP

>> EF-hand_8  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.0   0.1   8.5e-05      0.14      28      48 ..     519     539 ..     485     545 .. 0.80
   2 !   24.0   0.0   1.6e-08   2.6e-05       2      52 ..     531     579 ..     531     580 .. 0.95

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 8.5e-05
   EF-hand_8  28 vdilfrefDtdgdGkisfeEF 48 
                 + ++fr+fD+d +G i + EF
  KOO23319.1 519 IIDIFRAFDQDLSGQIEKQEF 539
                 5579****************9 PP

  == domain 2  score: 24.0 bits;  conditional E-value: 1.6e-08
   EF-hand_8   2 kgkItreelrrilrilglkkglseeevdilfrefDtdgdGkisfeEFcvll 52 
                 +g+I ++e+r  lr++++    +  e+d+ f+ +D+d++G +++ E c+++
  KOO23319.1 531 SGQIEKQEFRLVLRKMVIV--ATSAEADAAFDSLDQDRSGSLNYQELCERF 579
                 59*********99999999..***************************987 PP

>> EF-hand_5  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   0.5   1.5e-06    0.0024       1      24 [.     519     542 ..     519     543 .. 0.90
   2 !   10.2   0.0   0.00025      0.41       3      21 ..     557     575 ..     555     579 .. 0.88

  Alignments for each domain:
  == domain 1  score: 17.3 bits;  conditional E-value: 1.5e-06
                 HHHHHHHH-SS-SSCE-HHHHHHH CS
   EF-hand_5   1 lkdtFqaiDlNgDGkIskeELktl 24 
                 + d F+a+D + +G+I k+E++ +
  KOO23319.1 519 IIDIFRAFDQDLSGQIEKQEFRLV 542
                 5689*****************976 PP

  == domain 2  score: 10.2 bits;  conditional E-value: 0.00025
                 HHHHHH-SS-SSCE-HHHH CS
   EF-hand_5   3 dtFqaiDlNgDGkIskeEL 21 
                 ++F+ +D +++G ++ +EL
  KOO23319.1 557 AAFDSLDQDRSGSLNYQEL 575
                 58****************9 PP

>> Tricorn_PDZ  Tricorn protease PDZ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.1   0.0   0.00077       1.3      39      63 ..      48      72 ..      36      95 .. 0.80
   2 !    6.2   0.0     0.006       9.8      40      61 ..     211     232 ..     200     247 .. 0.85
   3 !    6.1   0.0    0.0065        11      44      72 ..     466     493 ..     453     504 .. 0.81

  Alignments for each domain:
  == domain 1  score: 9.1 bits;  conditional E-value: 0.00077
                 --.TT-EEEEETTEE-BTTB-HHHH CS
  Tricorn_PDZ 39 nvreGdlilavdgepvskekgiael 63
                 ++r+Gd ++a++g+pv+++++ ++l
   KOO23319.1 48 QLRKGDRVVAINGVPVRHQSDTSYL 72
                 5799*************99987765 PP

  == domain 2  score: 6.2 bits;  conditional E-value: 0.006
                  -.TT-EEEEETTEE-BTTB-HH CS
  Tricorn_PDZ  40 vreGdlilavdgepvskekgia 61 
                  +r Gd ++a+dg+pvs+ +++ 
   KOO23319.1 211 LRIGDRVMAIDGVPVSSASNFG 232
                  689*************988765 PP

  == domain 3  score: 6.1 bits;  conditional E-value: 0.0065
                  -EEEEETTEE-BTTB-HHHHHHTTTTSEE CS
  Tricorn_PDZ  44 dlilavdgepvskekgiaelLvgkagkev 72 
                  d +lav g+pv +++++aelL+  +   v
   KOO23319.1 466 DRLLAVGGRPVAEDTDFAELLTTDKL-RV 493
                  7899****************986554.44 PP

>> EF-hand_11  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.0       5.9   9.7e+03      63      85 ..      59      81 ..      53     103 .. 0.74
   2 !   19.6   0.1   7.9e-07    0.0013       5      87 ..     502     584 ..     499     592 .. 0.93

  Alignments for each domain:
  == domain 1  score: -2.5 bits;  conditional E-value: 5.9
                HTS-B-TTS-EEHHHHHHHHCS- CS
  EF-hand_11 63 selpvnakgrlkyqdflsklsie 85
                + +pv  +    y d+ls l   
  KOO23319.1 59 NGVPVRHQSDTSYLDILSALKDA 81
                56788888888888888887655 PP

  == domain 2  score: 19.6 bits;  conditional E-value: 7.9e-07
                 HHHHHHHHHHHHHSHHHHHHHHHHH-TT-SSEE-HHHHHHHHHHHT----HHHHHHHHHTS-B-TTS-EEHHHHHHHHCS-.- CS
  EF-hand_11   5 rdilarlqkavashyhaivqefenfdtlksntvsreefraictrrvqiltdeqfdrlwselpvnakgrlkyqdflsklsierv 87 
                  di+ +l++  a   + i++ f  fd   s  + ++efr +  + v + t  + d  ++ l  +  g l+yq++  ++  +  
  KOO23319.1 502 TDIVGQLKNKFAREPKRIIDIFRAFDQDLSGQIEKQEFRLVLRKMVIVATSAEADAAFDSLDQDRSGSLNYQELCERFRGDTS 584
                 599***********************************************************************999987744 PP

>> DUF1918  Domain of unknown function (DUF1918)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   0.00018      0.29      20      45 ..     281     306 ..     273     310 .. 0.85

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00018
                 EEEEEEEE-S-SSS-S-EEEEETTTT CS
     DUF1918  20 ereGeiveVrgedGaPPYlVRweddg 45 
                   ++eiveV+ e   P Y++R+e  g
  KOO23319.1 281 AIRAEIVEVHRETAPPLYTIRYEGMG 306
                 5689*********9999*****9766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (640 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       504  (0.0281109); expected 358.6 (0.02)
Passed bias filter:                      408  (0.0227564); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.57u 0.29s 00:00:00.85 Elapsed: 00:00:00.45
# Mc/sec: 4296.41
//
Query:       KOO23320.1  [L=764]
Description: mbre tpr repeat protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.8e-62  204.6  17.7    2.7e-11   43.0   0.5    6.6  6  TPR_10     Tetratricopeptide repeat
      1e-54  182.7  14.7    2.5e-18   66.1   3.6    3.8  3  TPR_12     Tetratricopeptide repeat
    3.2e-27   93.2  13.8      8e-06   25.5   0.4    6.5  6  TPR_1      Tetratricopeptide repeat
      2e-23   80.5  17.0    0.00011   22.0   0.7    7.0  6  TPR_2      Tetratricopeptide repeat
    4.7e-23   82.1   5.8      3e-13   49.9   1.8    2.4  2  TPR_MalT   MalT-like TPR region
    1.3e-21   74.9   7.5    0.00015   21.7   0.2    6.8  7  TPR_8      Tetratricopeptide repeat
    6.7e-21   72.7  14.4    0.00017   21.4   0.1    6.0  5  TPR_7      Tetratricopeptide repeat
    2.7e-19   69.5  23.7    8.2e-07   29.6   1.0    6.4  6  TPR_16     Tetratricopeptide repeat
    1.8e-12   46.6  16.2       0.18   12.5   0.0    7.5  5  TPR_4      Tetratricopeptide repeat
    5.4e-11   42.3  31.2      0.041   14.7   0.4    7.8  7  TPR_14     Tetratricopeptide repeat
    1.3e-10   40.9   9.0       0.28   11.7   0.0    6.7  6  TPR_17     Tetratricopeptide repeat
    1.7e-08   34.9  19.8      0.012   16.1   0.5    4.9  5  TPR_19     Tetratricopeptide repeat
    4.1e-05   23.4   9.6       0.52   10.0   2.3    4.4  4  TPR_21     Tetratricopeptide repeat-like domain
    0.00015   22.0  11.7       0.43   10.8   0.7    4.5  3  TPR_5      Tetratrico peptide repeat
    0.00027   21.1   0.5        4.4    7.6   0.1    4.5  4  Osmo_CC    Osmosensory transporter coiled coil
     0.0034   17.9  16.2        2.2    8.8   0.1    5.5  5  HisKA_3    Histidine kinase
  ------ inclusion threshold ------
      0.012   15.6   0.0        8.9    6.4   0.0    4.2  5  TPR_3      Tetratricopeptide repeat
       0.03   14.8   4.1         20    5.7   0.0    4.5  4  TetR_C_18  Tetracyclin repressor-like, C-terminal domain
       0.05   14.3   1.3        1.9    9.2   0.2    3.3  3  DUF4404    Domain of unknown function (DUF4404)
      0.091   13.1   0.9         20    5.6   0.1    3.1  3  RPN6_N     26S proteasome regulatory subunit RPN6 N-terminal 
      0.092   12.8   0.3         46    4.2   0.0    3.6  3  MIT        MIT (microtubule interacting and transport) domain
       0.13   12.0  12.1         12    5.7   0.2    5.3  5  TPR_11     TPR repeat


Domain annotation for each model (and alignments):
>> TPR_10  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.1   0.4   4.7e-12   3.8e-09       3      41 ..     527     565 ..     525     566 .. 0.95
   2 !   35.3   0.1   8.5e-12   6.9e-09       1      41 [.     567     607 ..     567     608 .. 0.93
   3 !   42.8   0.1   3.6e-14   2.9e-11       2      42 .]     610     650 ..     609     650 .. 0.95
   4 !   41.2   0.4   1.2e-13   9.9e-11       1      42 []     651     692 ..     651     692 .. 0.97
   5 !   43.0   0.5   3.3e-14   2.7e-11       1      41 [.     693     733 ..     693     734 .. 0.98
   6 !   14.0   0.0   4.2e-05     0.035       1      27 [.     735     761 ..     735     762 .. 0.95

  Alignments for each domain:
  == domain 1  score: 36.1 bits;  conditional E-value: 4.7e-12
      TPR_10   3 sslnNLanalrqrgrydeAealleealairrrllGpdHP 41 
                 + +n L+++l+++g++deAe ll+eal+++r++l + HP
  KOO23320.1 527 ALQNRLGALLQDQGKLDEAEPLLREALEAQRATLSDRHP 565
                 569***********************************9 PP

  == domain 2  score: 35.3 bits;  conditional E-value: 8.5e-12
      TPR_10   1 tAsslnNLanalrqrgrydeAealleealairrrllGpdHP 41 
                 t+ s+nNL+ +l ++g++++Ae l++eal++ r++lG+  P
  KOO23320.1 567 TLISMNNLGQLLKAQGKLNAAEPLYREALEAVRATLGDRDP 607
                 6789*********************************7665 PP

  == domain 3  score: 42.8 bits;  conditional E-value: 3.6e-14
      TPR_10   2 AsslnNLanalrqrgrydeAealleealairrrllGpdHPd 42 
                 +  lnNL+n+lr++g++deAe l +eal + r++lG+ HPd
  KOO23320.1 610 LKFLNNLGNLLRAQGKLDEAEPLVREALGVMRATLGDRHPD 650
                 5669************************************9 PP

  == domain 4  score: 41.2 bits;  conditional E-value: 1.2e-13
      TPR_10   1 tAsslnNLanalrqrgrydeAealleealairrrllGpdHPd 42 
                 t++s nNL+n+l++++++deAe l++eal++ r++ G+ H d
  KOO23320.1 651 TLRSINNLGNLLSAQRKRDEAEPLYREALEAMRATIGDRHSD 692
                 899************************************976 PP

  == domain 5  score: 43.0 bits;  conditional E-value: 3.3e-14
      TPR_10   1 tAsslnNLanalrqrgrydeAealleealairrrllGpdHP 41 
                 t++++ NL+n+l ++g++deAe l++eal+++r++lG+ HP
  KOO23320.1 693 TLRIMYNLGNLLEAQGKLDEAEPLYREALEAQRATLGDRHP 733
                 899*************************************9 PP

  == domain 6  score: 14.0 bits;  conditional E-value: 4.2e-05
      TPR_10   1 tAsslnNLanalrqrgrydeAeallee 27 
                 t+ s+  L+  l+++g++deA+ ll++
  KOO23320.1 735 TLDSMRALGFFLFHQGKLDEARPLLRD 761
                 899*********************997 PP

>> TPR_12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.1   3.6   3.1e-21   2.5e-18       3      76 ..     526     599 ..     524     600 .. 0.96
   2 !   65.6   0.4   4.6e-21   3.7e-18       4      76 ..     611     683 ..     608     684 .. 0.96
   3 !   57.1   0.2     2e-18   1.6e-15       2      71 ..     693     762 ..     692     762 .. 0.95

  Alignments for each domain:
  == domain 1  score: 66.1 bits;  conditional E-value: 3.1e-21
      TPR_12   3 atalnnlaavlrrlgrydeAlellekaleiarrllGpdhpltattlrnLgrlyralgryeeAlelleealaiae 76 
                 ++++n+l+a+l+ +g++deA+ ll++ale++r++l + hp t+++++nLg+l+ a+g++ +A+ l++eal++ +
  KOO23320.1 526 SALQNRLGALLQDQGKLDEAEPLLREALEAQRATLSDRHPSTLISMNNLGQLLKAQGKLNAAEPLYREALEAVR 599
                 678989*****************************************************************876 PP

  == domain 2  score: 65.6 bits;  conditional E-value: 4.6e-21
      TPR_12   4 talnnlaavlrrlgrydeAlellekaleiarrllGpdhpltattlrnLgrlyralgryeeAlelleealaiae 76 
                 + lnnl+++lr++g++deA+ l ++al ++r++lG+ hp+t+++ +nLg l++a+ + +eA+ l++eal++++
  KOO23320.1 611 KFLNNLGNLLRAQGKLDEAEPLVREALGVMRATLGDRHPDTLRSINNLGNLLSAQRKRDEAEPLYREALEAMR 683
                 5689******************************************************************987 PP

  == domain 3  score: 57.1 bits;  conditional E-value: 2e-18
      TPR_12   2 vatalnnlaavlrrlgrydeAlellekaleiarrllGpdhpltattlrnLgrlyralgryeeAlelleea 71 
                 ++++++nl+++l ++g++deA+ l+++ale++r++lG+ hp t+ ++r+Lg  ++ +g+++eA+ ll+++
  KOO23320.1 693 TLRIMYNLGNLLEAQGKLDEAEPLYREALEAQRATLGDRHPTTLDSMRALGFFLFHQGKLDEARPLLRDS 762
                 667778************************************************************9975 PP

>> TPR_1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.0   0.1   4.5e-06    0.0037       4      29 ..     529     554 ..     526     557 .. 0.93
   2 !   18.0   0.2   2.2e-06    0.0018       5      29 ..     572     596 ..     569     597 .. 0.95
   3 !   17.1   0.0   4.3e-06    0.0035       3      28 ..     612     637 ..     610     639 .. 0.90
   4 !   16.9   0.0     5e-06    0.0041       5      29 ..     656     680 ..     653     681 .. 0.95
   5 !   25.5   0.4   9.9e-09     8e-06       4      29 ..     697     722 ..     695     725 .. 0.93
   6 ?    2.7   0.0      0.16   1.3e+02       7      21 ..     742     756 ..     740     760 .. 0.87

  Alignments for each domain:
  == domain 1  score: 17.0 bits;  conditional E-value: 4.5e-06
                 HHHHHHHHHHTT-HHHHHHHHHHHHH CS
       TPR_1   4 lynlGnayfklgkydeAleyyekALe 29 
                  ++lG++++ +gk+deA+   ++ALe
  KOO23320.1 529 QNRLGALLQDQGKLDEAEPLLREALE 554
                 589**********************9 PP

  == domain 2  score: 18.0 bits;  conditional E-value: 2.2e-06
                 HHHHHHHHHTT-HHHHHHHHHHHHH CS
       TPR_1   5 ynlGnayfklgkydeAleyyekALe 29 
                 +nlG+++  +gk++ A+  y++ALe
  KOO23320.1 572 NNLGQLLKAQGKLNAAEPLYREALE 596
                 9***********************8 PP

  == domain 3  score: 17.1 bits;  conditional E-value: 4.3e-06
                 HHHHHHHHHHHTT-HHHHHHHHHHHH CS
       TPR_1   3 alynlGnayfklgkydeAleyyekAL 28 
                  l+nlGn+++ +gk+deA+   ++AL
  KOO23320.1 612 FLNNLGNLLRAQGKLDEAEPLVREAL 637
                 69****************99888887 PP

  == domain 4  score: 16.9 bits;  conditional E-value: 5e-06
                 HHHHHHHHHTT-HHHHHHHHHHHHH CS
       TPR_1   5 ynlGnayfklgkydeAleyyekALe 29 
                 +nlGn++  + k deA+  y++ALe
  KOO23320.1 656 NNLGNLLSAQRKRDEAEPLYREALE 680
                 8***********************8 PP

  == domain 5  score: 25.5 bits;  conditional E-value: 9.9e-09
                 HHHHHHHHHHTT-HHHHHHHHHHHHH CS
       TPR_1   4 lynlGnayfklgkydeAleyyekALe 29 
                  ynlGn++  +gk+deA+  y++ALe
  KOO23320.1 697 MYNLGNLLEAQGKLDEAEPLYREALE 722
                 6************************9 PP

  == domain 6  score: 2.7 bits;  conditional E-value: 0.16
                 HHHHHHHTT-HHHHH CS
       TPR_1   7 lGnayfklgkydeAl 21 
                 lG  +f++gk+deA 
  KOO23320.1 742 LGFFLFHQGKLDEAR 756
                 78889*********6 PP

>> TPR_2  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.6   0.5   3.1e-05     0.025       3      30 ..     528     555 ..     526     558 .. 0.91
   2 !   14.0   0.1   5.1e-05     0.041       4      29 ..     571     596 ..     569     599 .. 0.94
   3 !   15.0   0.0   2.5e-05      0.02       3      28 ..     612     637 ..     610     638 .. 0.94
   4 !   13.8   0.1   5.6e-05     0.046       5      29 ..     656     680 ..     653     683 .. 0.93
   5 !   22.0   0.7   1.4e-07   0.00011       3      30 ..     696     723 ..     695     726 .. 0.93
   6 !    6.9   0.0    0.0092       7.5       5      24 ..     740     759 ..     737     762 .. 0.86

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 3.1e-05
       TPR_2   3 alynlGlayyklgdyeeAleafekAlel 30 
                 + ++lG ++  +g+++eA+ ++++Ale 
  KOO23320.1 528 LQNRLGALLQDQGKLDEAEPLLREALEA 555
                 5689**********************95 PP

  == domain 2  score: 14.0 bits;  conditional E-value: 5.1e-05
       TPR_2   4 lynlGlayyklgdyeeAleafekAle 29 
                  +nlG+++ ++g+++ A+ ++++Ale
  KOO23320.1 571 MNNLGQLLKAQGKLNAAEPLYREALE 596
                 68***********************8 PP

  == domain 3  score: 15.0 bits;  conditional E-value: 2.5e-05
       TPR_2   3 alynlGlayyklgdyeeAleafekAl 28 
                  l+nlG++++++g+++eA+ + ++Al
  KOO23320.1 612 FLNNLGNLLRAQGKLDEAEPLVREAL 637
                 799*****************999998 PP

  == domain 4  score: 13.8 bits;  conditional E-value: 5.6e-05
       TPR_2   5 ynlGlayyklgdyeeAleafekAle 29 
                 +nlG+++ ++ + +eA+ ++++Ale
  KOO23320.1 656 NNLGNLLSAQRKRDEAEPLYREALE 680
                 79**********************8 PP

  == domain 5  score: 22.0 bits;  conditional E-value: 1.4e-07
       TPR_2   3 alynlGlayyklgdyeeAleafekAlel 30 
                 + ynlG++++++g+++eA+ ++++Ale 
  KOO23320.1 696 IMYNLGNLLEAQGKLDEAEPLYREALEA 723
                 68************************95 PP

  == domain 6  score: 6.9 bits;  conditional E-value: 0.0092
       TPR_2   5 ynlGlayyklgdyeeAleaf 24 
                  +lG  ++++g+++eA+ ++
  KOO23320.1 740 RALGFFLFHQGKLDEARPLL 759
                 689*************9776 PP

>> TPR_MalT  MalT-like TPR region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.9   1.8   3.7e-16     3e-13      24     154 ..     511     642 ..     505     651 .. 0.87
   2 !   33.6   0.1   3.3e-11   2.7e-08      46     146 ..     658     760 ..     645     762 .. 0.86

  Alignments for each domain:
  == domain 1  score: 49.9 bits;  conditional E-value: 3.7e-16
    TPR_MalT  24 ArqALallpeddllariaatavlGeasllqGdleaAlqalqeaekl..arqadslhvallallqqaeilvaqGrLheAletyeqalqlateqglqqlpl 120
                  r+ALa++p ++  ++++    lG   + qG+l++A+  l+ea ++  a   d+ + +l ++  ++++l aqG+L +A+ +y++al+ ++ + + + p+
  KOO23320.1 511 GRAALARMPREERATSALQ-NRLGALLQDQGKLDEAEPLLREALEAqrATLSDRHPSTLISMNNLGQLLKAQGKLNAAEPLYREALEAVRATLGDRDPT 608
                 5899*****9998877777.556999999************8875422555566666*****************************************9 PP

    TPR_MalT 121 vgfllvlladllyEwndLeeAeqhlqeGielleq 154
                     l  l++ll+ +++L+eAe  ++e++ + + 
  KOO23320.1 609 TLKFLNNLGNLLRAQGKLDEAEPLVREALGVMRA 642
                 99888999*******************9987765 PP

  == domain 2  score: 33.6 bits;  conditional E-value: 3.3e-11
    TPR_MalT  46 lGeasllqGdleaAlqalqeaekla.rqadslhv.allallqqaeilvaqGrLheAletyeqalqlateqglqqlplvgfllvlladllyEwndLeeAe 142
                 lG     q ++++A+  ++ea +++   ++  h  +l  ++ ++++l aqG+L+eA+ +y++al+  + + + + p+    ++ l+  l+ +++L+eA+
  KOO23320.1 658 LGNLLSAQRKRDEAEPLYREALEAMrATIGDRHSdTLRIMYNLGNLLEAQGKLDEAEPLYREALEAQRATLGDRHPTTLDSMRALGFFLFHQGKLDEAR 756
                 6666667888999******9986531445555544***************************************************************9 PP

    TPR_MalT 143 qhlq 146
                   l+
  KOO23320.1 757 PLLR 760
                 8776 PP

>> TPR_8  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.0       8.4   6.9e+03      12      23 ..     230     241 ..     229     242 .. 0.85
   2 !   13.1   0.1    0.0001     0.084       4      33 ..     529     558 ..     526     559 .. 0.91
   3 !   14.7   0.1   3.2e-05     0.026       4      29 ..     571     596 ..     569     597 .. 0.94
   4 !   10.7   0.0    0.0006      0.49       2      28 ..     611     637 ..     610     639 .. 0.91
   5 !   11.9   0.0   0.00026      0.21       2      29 ..     653     680 ..     652     683 .. 0.94
   6 !   21.7   0.2   1.8e-07   0.00015       2      33 ..     695     726 ..     694     727 .. 0.93
   7 ?   -0.8   0.0         3   2.4e+03       7      24 ..     742     759 ..     741     762 .. 0.81

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 8.4
                 HHTT-HHHHHHH CS
       TPR_8  12 lklgdyeeAkey 23 
                 + lgd+++ +e+
  KOO23320.1 230 ERLGDKDAQMEC 241
                 689****99987 PP

  == domain 2  score: 13.1 bits;  conditional E-value: 0.0001
                 HHHHHHHHHHTT-HHHHHHHHHHHHHHHHH CS
       TPR_8   4 yynlgsiylklgdyeeAkeyyekaleldpd 33 
                  ++lg +++++g+++eA+  +++ale++++
  KOO23320.1 529 QNRLGALLQDQGKLDEAEPLLREALEAQRA 558
                 5799**********************9875 PP

  == domain 3  score: 14.7 bits;  conditional E-value: 3.2e-05
                 HHHHHHHHHHTT-HHHHHHHHHHHHH CS
       TPR_8   4 yynlgsiylklgdyeeAkeyyekale 29 
                 ++nlg++++ +g++++A+  y++ale
  KOO23320.1 571 MNNLGQLLKAQGKLNAAEPLYREALE 596
                 79***********************8 PP

  == domain 4  score: 10.7 bits;  conditional E-value: 0.0006
                 CHHHHHHHHHHHTT-HHHHHHHHHHHH CS
       TPR_8   2 eayynlgsiylklgdyeeAkeyyekal 28 
                 + ++nlg++++ +g+++eA+   ++al
  KOO23320.1 611 KFLNNLGNLLRAQGKLDEAEPLVREAL 637
                 6799****************9999998 PP

  == domain 5  score: 11.9 bits;  conditional E-value: 0.00026
                 CHHHHHHHHHHHTT-HHHHHHHHHHHHH CS
       TPR_8   2 eayynlgsiylklgdyeeAkeyyekale 29 
                 ++ +nlg++++ + + +eA+  y++ale
  KOO23320.1 653 RSINNLGNLLSAQRKRDEAEPLYREALE 680
                 6789***********************8 PP

  == domain 6  score: 21.7 bits;  conditional E-value: 1.8e-07
                 CHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH CS
       TPR_8   2 eayynlgsiylklgdyeeAkeyyekaleldpd 33 
                 +++ynlg++++ +g+++eA+  y++ale++++
  KOO23320.1 695 RIMYNLGNLLEAQGKLDEAEPLYREALEAQRA 726
                 799*************************9875 PP

  == domain 7  score: -0.8 bits;  conditional E-value: 3
                 HHHHHHHTT-HHHHHHHH CS
       TPR_8   7 lgsiylklgdyeeAkeyy 24 
                 lg  ++ +g+++eA   +
  KOO23320.1 742 LGFFLFHQGKLDEARPLL 759
                 6778899*******8766 PP

>> TPR_7  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.7   0.6   0.00025       0.2       3      27 ..     530     555 ..     527     563 .. 0.83
   2 !   13.3   0.0     8e-05     0.065       2      32 ..     571     602 ..     570     607 .. 0.84
   3 !   14.7   0.0   2.9e-05     0.023       2      31 ..     613     643 ..     613     647 .. 0.85
   4 !   21.4   0.1   2.1e-07   0.00017       1      33 [.     654     687 ..     654     689 .. 0.89
   5 !   17.0   0.3   5.2e-06    0.0042       3      27 ..     698     723 ..     696     731 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.00025
       TPR_7   3 lnLarlysrlGdyeeAielyeqsL.a 27 
                 ++L+ l +++G+ +eA+ l++++L a
  KOO23320.1 530 NRLGALLQDQGKLDEAEPLLREALeA 555
                 89********************8844 PP

  == domain 2  score: 13.3 bits;  conditional E-value: 8e-05
       TPR_7   2 LlnLarlysrlGdyeeAielyeqsL.altkdp 32 
                  +nL++l  ++G+   A+ ly+++L a++   
  KOO23320.1 571 MNNLGQLLKAQGKLNAAEPLYREALeAVRATL 602
                 69*********************996666544 PP

  == domain 3  score: 14.7 bits;  conditional E-value: 2.9e-05
       TPR_7   2 LlnLarlysrlGdyeeAielyeqsL.altkd 31 
                 L+nL++l +++G+ +eA+ l +++L +++  
  KOO23320.1 613 LNNLGNLLRAQGKLDEAEPLVREALgVMRAT 643
                 89*********************99555544 PP

  == domain 4  score: 21.4 bits;  conditional E-value: 2.1e-07
       TPR_7   1 aLlnLarlysrlGdyeeAielyeqsL.altkdpe 33 
                 +++nL++l s++++++eA+ ly+++L a++   +
  KOO23320.1 654 SINNLGNLLSAQRKRDEAEPLYREALeAMRATIG 687
                 689***********************88886665 PP

  == domain 5  score: 17.0 bits;  conditional E-value: 5.2e-06
       TPR_7   3 lnLarlysrlGdyeeAielyeqsL.a 27 
                 +nL++l +++G+ +eA+ ly+++L a
  KOO23320.1 698 YNLGNLLEAQGKLDEAEPLYREALeA 723
                 7*********************8844 PP

>> TPR_16  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.0   3.8    0.0013         1       3      27 ..     532     556 ..     497     559 .. 0.62
   2 !   25.3   3.0   2.2e-08   1.8e-05       3      63 ..     532     597 ..     530     601 .. 0.90
   3 !   23.8   1.5   6.2e-08     5e-05       3      62 ..     574     638 ..     573     642 .. 0.88
   4 !   17.6   1.5   5.4e-06    0.0044       2      63 ..     615     681 ..     615     688 .. 0.88
   5 !   26.6   3.9   8.6e-09     7e-06       2      63 ..     657     723 ..     656     727 .. 0.81
   6 !   29.6   1.0     1e-09   8.2e-07       1      58 [.     698     760 ..     698     763 .. 0.93

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.0013
      TPR_16   3 laraalragdyddAaaaleaalkrd 27 
                 l+ ++ ++g+ d+A+++l++al+++
  KOO23320.1 532 LGALLQDQGKLDEAEPLLREALEAQ 556
                 4455555555555555555555555 PP

  == domain 2  score: 25.3 bits;  conditional E-value: 2.2e-08
      TPR_16   3 laraalragdyddAaaaleaalkrdpssPd.....aaeAllllgdaalrqgrlaeAaalyraalra 63 
                 l+ ++ ++g+ d+A+++l++al++++ +       +  ++++lg+++ +qg l +A+ lyr+al+a
  KOO23320.1 532 LGALLQDQGKLDEAEPLLREALEAQRATLSdrhpsTLISMNNLGQLLKAQGKLNAAEPLYREALEA 597
                 7889*********************7554467777****************************976 PP

  == domain 3  score: 23.8 bits;  conditional E-value: 6.2e-08
      TPR_16   3 laraalragdyddAaaaleaalkrdpssPd.....aaeAllllgdaalrqgrlaeAaalyraalr 62 
                 l++++ ++g+  +A++++++al++ + +       +  +l++lg+++ +qg l+eA+ l+r+al+
  KOO23320.1 574 LGQLLKAQGKLNAAEPLYREALEAVRATLGdrdptTLKFLNNLGNLLRAQGKLDEAEPLVREALG 638
                 78999999999999999999999985555578888***************************985 PP

  == domain 4  score: 17.6 bits;  conditional E-value: 5.4e-06
      TPR_16   2 alaraalragdyddAaaaleaalk.....rdpssPdaaeAllllgdaalrqgrlaeAaalyraalra 63 
                 +l+++++++g+ d+A+++ ++al      ++ ++Pd+ ++ ++lg+++ +q   +eA+ lyr+al+a
  KOO23320.1 615 NLGNLLRAQGKLDEAEPLVREALGvmratLGDRHPDTLRSINNLGNLLSAQRKRDEAEPLYREALEA 681
                 5899******************963333357788******************************964 PP

  == domain 5  score: 26.6 bits;  conditional E-value: 8.6e-09
      TPR_16   2 alaraalragdyddAaaaleaalkr.....dpssPdaaeAllllgdaalrqgrlaeAaalyraalra 63 
                 +l++++ ++++ d+A++++++al++     + +++d+ + +++lg+++ +qg l+eA+ lyr+al+a
  KOO23320.1 657 NLGNLLSAQRKRDEAEPLYREALEAmratiGDRHSDTLRIMYNLGNLLEAQGKLDEAEPLYREALEA 723
                 578888888888888888888887733333345677****************************976 PP

  == domain 6  score: 29.6 bits;  conditional E-value: 1e-09
      TPR_16   1 lalaraalragdyddAaaaleaalkrdpssPd.....aaeAllllgdaalrqgrlaeAaalyr 58 
                 ++l++++ ++g+ d+A++++++al++++ +       + +++ +lg  +++qg l+eA+ l+r
  KOO23320.1 698 YNLGNLLEAQGKLDEAEPLYREALEAQRATLGdrhptTLDSMRALGFFLFHQGKLDEARPLLR 760
                 89*************************6665599999**********************8887 PP

>> TPR_4  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.1   1.0   0.00064      0.53       7      26 .]     532     551 ..     527     551 .. 0.92
   2 ?    3.4   0.0      0.19   1.6e+02       6      26 .]     573     593 ..     570     593 .. 0.92
   3 !   12.0   0.0   0.00032      0.26       6      26 .]     615     635 ..     612     635 .. 0.91
   4 !   12.5   0.0   0.00022      0.18       2      26 .]     695     719 ..     694     719 .. 0.91
   5 !   12.0   0.0   0.00032      0.26       5      25 ..     740     760 ..     737     761 .. 0.92

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00064
       TPR_4   7 LArallalGdldeAraller 26 
                 L+ +l+++G ldeA+ ll++
  KOO23320.1 532 LGALLQDQGKLDEAEPLLRE 551
                 899***************97 PP

  == domain 2  score: 3.4 bits;  conditional E-value: 0.19
       TPR_4   6 aLArallalGdldeAraller 26 
                 +L+++l a+G l +A+ l ++
  KOO23320.1 573 NLGQLLKAQGKLNAAEPLYRE 593
                 89**************99986 PP

  == domain 3  score: 12.0 bits;  conditional E-value: 0.00032
       TPR_4   6 aLArallalGdldeAraller 26 
                 +L+ +l a+G ldeA+ l+++
  KOO23320.1 615 NLGNLLRAQGKLDEAEPLVRE 635
                 8****************9996 PP

  == domain 4  score: 12.5 bits;  conditional E-value: 0.00022
       TPR_4   2 rallaLArallalGdldeAraller 26 
                 r  ++L+ +l a+G ldeA+ l ++
  KOO23320.1 695 RIMYNLGNLLEAQGKLDEAEPLYRE 719
                 5679*****************9986 PP

  == domain 5  score: 12.0 bits;  conditional E-value: 0.00032
       TPR_4   5 laLArallalGdldeAralle 25 
                  aL+  l+++G ldeAr ll+
  KOO23320.1 740 RALGFFLFHQGKLDEARPLLR 760
                 6899****************9 PP

>> TPR_14  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.4       9.3   7.6e+03      22      38 ..     501     517 ..     492     520 .. 0.69
   2 !   12.0   1.3   0.00036       0.3       4      31 ..     529     556 ..     526     563 .. 0.87
   3 !    8.1   0.4    0.0067       5.4       7      30 ..     574     597 ..     573     613 .. 0.87
   4 !    8.5   0.1    0.0049         4       7      28 ..     616     637 ..     610     651 .. 0.92
   5 ?    7.2   0.2     0.013        10       7      29 ..     658     680 ..     657     688 .. 0.92
   6 !   14.7   0.4     5e-05     0.041       6      31 ..     699     724 ..     694     732 .. 0.89
   7 !    9.3   0.0    0.0028       2.3       5      26 ..     740     761 ..     736     764 .] 0.90

  Alignments for each domain:
  == domain 1  score: -1.7 bits;  conditional E-value: 9.3
      TPR_14  22 allrralalaPddaeaw 38 
                 ++lr++la+    a a+
  KOO23320.1 501 EALREWLAAEGRAALAR 517
                 67777777766666655 PP

  == domain 2  score: 12.0 bits;  conditional E-value: 0.00036
      TPR_14   4 llalaeallalGdpdeAiallrralala 31 
                 + +l+++l  +G++deA+ llr+al+++
  KOO23320.1 529 QNRLGALLQDQGKLDEAEPLLREALEAQ 556
                 56899999*****************964 PP

  == domain 3  score: 8.1 bits;  conditional E-value: 0.0067
      TPR_14   7 laeallalGdpdeAiallrralal 30 
                 l+++l a+G++ +A+ l+r+al++
  KOO23320.1 574 LGQLLKAQGKLNAAEPLYREALEA 597
                 799*******************94 PP

  == domain 4  score: 8.5 bits;  conditional E-value: 0.0049
      TPR_14   7 laeallalGdpdeAiallrral 28 
                 l+ +l+a+G++deA+ l r+al
  KOO23320.1 616 LGNLLRAQGKLDEAEPLVREAL 637
                 7899****************98 PP

  == domain 5  score: 7.2 bits;  conditional E-value: 0.013
      TPR_14   7 laeallalGdpdeAiallrrala 29 
                 l+ +l a+++ deA+ l+r+al+
  KOO23320.1 658 LGNLLSAQRKRDEAEPLYREALE 680
                 78899****************98 PP

  == domain 6  score: 14.7 bits;  conditional E-value: 5e-05
      TPR_14   6 alaeallalGdpdeAiallrralala 31 
                  l+ +l+a+G++deA+ l+r+al+++
  KOO23320.1 699 NLGNLLEAQGKLDEAEPLYREALEAQ 724
                 5899*******************965 PP

  == domain 7  score: 9.3 bits;  conditional E-value: 0.0028
      TPR_14   5 lalaeallalGdpdeAiallrr 26 
                 +al+ +l+++G++deA+ llr+
  KOO23320.1 740 RALGFFLFHQGKLDEARPLLRD 761
                 68999***************98 PP

>> TPR_17  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.4   0.2      0.32   2.6e+02      17      33 ..     530     546 ..     526     546 .. 0.91
   2 !    8.9   0.0    0.0026       2.1      14      33 ..     569     588 ..     561     588 .. 0.87
   3 !   11.7   0.0   0.00034      0.28       8      33 ..     605     630 ..     604     630 .. 0.88
   4 ?    2.0   0.0      0.42   3.4e+02      15      32 ..     654     671 ..     646     672 .. 0.77
   5 !    9.5   0.1    0.0016       1.3      15      33 ..     696     714 ..     695     714 .. 0.93
   6 ?    5.1   0.0     0.042        34       9      33 ..     732     756 ..     716     756 .. 0.87

  Alignments for each domain:
  == domain 1  score: 2.4 bits;  conditional E-value: 0.32
      TPR_17  17 nnLAelllknGdlmtAr 33 
                 n L+ ll  +G+l++A+
  KOO23320.1 530 NRLGALLQDQGKLDEAE 546
                 789************96 PP

  == domain 2  score: 8.9 bits;  conditional E-value: 0.0026
      TPR_17  14 daynnLAelllknGdlmtAr 33 
                  ++nnL++ll+ +G+l  A+
  KOO23320.1 569 ISMNNLGQLLKAQGKLNAAE 588
                 689************99885 PP

  == domain 3  score: 11.7 bits;  conditional E-value: 0.00034
      TPR_17   8 ldPnnadaynnLAelllknGdlmtAr 33 
                 +dP+  +++nnL++ll+ +G+l++A+
  KOO23320.1 605 RDPTTLKFLNNLGNLLRAQGKLDEAE 630
                 56777789****************96 PP

  == domain 4  score: 2.0 bits;  conditional E-value: 0.42
      TPR_17  15 aynnLAelllknGdlmtA 32 
                 + nnL++ll+ + + ++A
  KOO23320.1 654 SINNLGNLLSAQRKRDEA 671
                 779******988776666 PP

  == domain 5  score: 9.5 bits;  conditional E-value: 0.0016
      TPR_17  15 aynnLAelllknGdlmtAr 33 
                  ++nL++ll+ +G+l++A+
  KOO23320.1 696 IMYNLGNLLEAQGKLDEAE 714
                 59***************96 PP

  == domain 6  score: 5.1 bits;  conditional E-value: 0.042
      TPR_17   9 dPnnadaynnLAelllknGdlmtAr 33 
                 +P+  d++  L+ +l ++G+l++Ar
  KOO23320.1 732 HPTTLDSMRALGFFLFHQGKLDEAR 756
                 5777799****************97 PP

>> TPR_19  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6   3.2     0.013        11      12      56 ..     513     557 ..     507     565 .. 0.83
   2 !   16.1   0.5   1.5e-05     0.012       3      48 ..     580     633 ..     578     638 .. 0.88
   3 ?    2.7   0.1      0.22   1.8e+02       9      53 ..     635     680 ..     631     683 .. 0.73
   4 !   14.3   3.5   5.4e-05     0.044       3      56 ..     664     725 ..     662     728 .. 0.83
   5 !   15.8   0.4   1.9e-05     0.015       3      49 ..     706     760 ..     704     763 .. 0.90

  Alignments for each domain:
  == domain 1  score: 6.6 bits;  conditional E-value: 0.013
      TPR_19  12 alleqalqedpknaearllLAeallalgqldeAealLdalpeedp 56 
                 a+l+++  e+   ++++ +L  +l  +g ldeAe lL +++e+++
  KOO23320.1 513 AALARMPREERATSALQNRLGALLQDQGKLDEAEPLLREALEAQR 557
                 667777778888999999999999999999999999999999886 PP

  == domain 2  score: 16.1 bits;  conditional E-value: 1.5e-05
      TPR_19   3 aegdyaeAlalleqalqe........dpknaearllLAeallalgqldeAealL 48 
                 a+g++ +A +l+++al++        dp  +  + +L ++l a+g ldeAe l+
  KOO23320.1 580 AQGKLNAAEPLYREALEAvratlgdrDPTTLKFLNNLGNLLRAQGKLDEAEPLV 633
                 89**************7777777777************************9766 PP

  == domain 3  score: 2.7 bits;  conditional E-value: 0.22
      TPR_19   9 eAlalleqal.qedpknaearllLAeallalgqldeAealLdalpe 53 
                 eAl  +++ l +  p+ ++   +L ++l a+   deAe l  +++e
  KOO23320.1 635 EALGVMRATLgDRHPDTLRSINNLGNLLSAQRKRDEAEPLYREALE 680
                 6777777764266888888888899999999999999876666555 PP

  == domain 4  score: 14.3 bits;  conditional E-value: 5.4e-05
      TPR_19   3 aegdyaeAlalleqalqe........dpknaearllLAeallalgqldeAealLdalpeedp 56 
                 a+ + +eA +l+++al++          + +++ ++L ++l a+g ldeAe l  +++e+++
  KOO23320.1 664 AQRKRDEAEPLYREALEAmratigdrHSDTLRIMYNLGNLLEAQGKLDEAEPLYREALEAQR 725
                 67888999999999997766666655888999999****************99999888775 PP

  == domain 5  score: 15.8 bits;  conditional E-value: 1.9e-05
      TPR_19   3 aegdyaeAlalleqalqe........dpknaearllLAeallalgqldeAealLd 49 
                 a+g+++eA +l+++al++         p  ++   +L   l+ +g ldeA+ lL 
  KOO23320.1 706 AQGKLDEAEPLYREALEAqratlgdrHPTTLDSMRALGFFLFHQGKLDEARPLLR 760
                 89**************7777777777999**********************8885 PP

>> TPR_21  Tetratricopeptide repeat-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.0   2.3   0.00064      0.52     106     187 ..     519     611 ..     497     618 .. 0.73
   2 ?   -0.3   0.0      0.88   7.2e+02     152     173 ..     616     637 ..     608     654 .. 0.81
   3 !    6.8   0.0    0.0062       5.1     153     179 ..     659     685 ..     641     698 .. 0.88
   4 !    7.6   0.1    0.0034       2.8     153     178 ..     701     726 ..     698     737 .. 0.90

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.00064
      TPR_21 106 akdeelkalarlRLarvllaekkydeAlktLeakkeeafaalvaelr..........GDilvaqgkldeAraaYqaAlaaleeka..rellqlK 187
                  ++e  ++  + RL ++l +++k+deA  +L ++ e+  +a  +++           G +l aqgkl+ A   Y++Al+a  ++   r+ + lK
  KOO23320.1 519 PREERATSALQNRLGALLQDQGKLDEAEPLLREALEA-QRATLSDRHpstlismnnlGQLLKAQGKLNAAEPLYREALEAVRATLgdRDPTTLK 611
                 556666777889***************9999766544.4444444433333334444**********************998876666666666 PP

  == domain 2  score: -0.3 bits;  conditional E-value: 0.88
      TPR_21 152 rGDilvaqgkldeAraaYqaAl 173
                  G++l aqgkldeA    ++Al
  KOO23320.1 616 LGNLLRAQGKLDEAEPLVREAL 637
                 5999999****99987666665 PP

  == domain 3  score: 6.8 bits;  conditional E-value: 0.0062
      TPR_21 153 GDilvaqgkldeAraaYqaAlaaleek 179
                 G++l+aq k+deA   Y++Al+a+ ++
  KOO23320.1 659 GNLLSAQRKRDEAEPLYREALEAMRAT 685
                 99********************99876 PP

  == domain 4  score: 7.6 bits;  conditional E-value: 0.0034
      TPR_21 153 GDilvaqgkldeAraaYqaAlaalee 178
                 G++l aqgkldeA   Y++Al+a+ +
  KOO23320.1 701 GNLLEAQGKLDEAEPLYREALEAQRA 726
                 899*******************9876 PP

>> TPR_5  Tetratrico peptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.5   0.5       0.1        83      44      73 ..     532     561 ..     507     576 .. 0.64
   2 !   10.4   0.5    0.0007      0.57      14      66 ..     581     638 ..     575     669 .. 0.69
   3 !   10.8   0.7   0.00052      0.43      17      82 ..     668     742 ..     659     755 .. 0.63

  Alignments for each domain:
  == domain 1  score: 3.5 bits;  conditional E-value: 0.1
       TPR_5  44 LassLRnlGeaeealaLLraeleapsdeld 73 
                 L + L   G+++ea+ LLr+ lea+   l+
  KOO23320.1 532 LGALLQDQGKLDEAEPLLREALEAQRATLS 561
                 555555566666666666666665555554 PP

  == domain 2  score: 10.4 bits;  conditional E-value: 0.0007
       TPR_5  14 tGhedkavplYrraLae.....GLagarrrratiqLassLRnlGeaeealaLLraele 66 
                  G+ ++a+plYr+aL++     G ++    +    L   LR  G+++ea+ L+r+ l 
  KOO23320.1 581 QGKLNAAEPLYREALEAvratlGDRDPTTLKFLNNLGNLLRAQGKLDEAEPLVREALG 638
                 68899**********9744433445556666667899999************998754 PP

  == domain 3  score: 10.8 bits;  conditional E-value: 0.00052
       TPR_5  17 edkavplYrraLae.....GLagarrrratiqLassLRnlGeaeealaLLraeleapsdeldd....alaaflaL 82 
                  d+a+plYr+aL++     G + +   r++  L   L   G+++ea+ L r+ lea+   l d     l +++aL
  KOO23320.1 668 RDEAEPLYREALEAmratiGDRHSDTLRIMYNLGNLLEAQGKLDEAEPLYREALEAQRATLGDrhptTLDSMRAL 742
                 689999999999873332233334444556677777888899999999988888776555544111155555555 PP

>> Osmo_CC  Osmosensory transporter coiled coil
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.2   0.0       1.1   8.9e+02      10      26 ..     450     466 ..     447     476 .. 0.88
   2 !    7.6   0.1    0.0054       4.4      29      44 ..     551     566 ..     544     567 .. 0.93
   3 ?    0.2   0.0       1.1     9e+02      34      44 ..     640     650 ..     627     651 .. 0.83
   4 ?    5.8   0.0      0.02        17      29      44 ..     719     734 ..     718     735 .. 0.92

  Alignments for each domain:
  == domain 1  score: 0.2 bits;  conditional E-value: 1.1
                 XXXXXTHHHHHHHHHHH CS
     Osmo_CC  10 LqehYdnIEqkvedide 26 
                 L +++d I  +v +id 
  KOO23320.1 450 LVNEFDVIAASVAHIDS 466
                 8899************7 PP

  == domain 2  score: 7.6 bits;  conditional E-value: 0.0054
                 HHHHHHHHHHHHH--- CS
     Osmo_CC  29 aaLeekRqrLvdqHPk 44 
                 +aLe++R +L d+HP 
  KOO23320.1 551 EALEAQRATLSDRHPS 566
                 689************5 PP

  == domain 3  score: 0.2 bits;  conditional E-value: 1.1
                 HHHHHHHH--- CS
     Osmo_CC  34 kRqrLvdqHPk 44 
                  R +L d+HP+
  KOO23320.1 640 MRATLGDRHPD 650
                 6999******7 PP

  == domain 4  score: 5.8 bits;  conditional E-value: 0.02
                 HHHHHHHHHHHHH--- CS
     Osmo_CC  29 aaLeekRqrLvdqHPk 44 
                 +aLe++R +L d+HP 
  KOO23320.1 719 EALEAQRATLGDRHPT 734
                 68*************5 PP

>> HisKA_3  Histidine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.5   1.3      0.12     1e+02      37      67 ..     537     567 ..     509     568 .. 0.82
   2 ?    5.8   0.1     0.024        20      37      67 ..     579     609 ..     570     610 .. 0.87
   3 !    8.8   0.1    0.0027       2.2      37      67 ..     621     651 ..     613     652 .. 0.90
   4 ?    2.0   0.1      0.38   3.1e+02      38      63 ..     664     689 ..     656     694 .. 0.82
   5 ?    4.9   0.4     0.048        39      37      67 ..     705     735 ..     679     736 .. 0.79

  Alignments for each domain:
  == domain 1  score: 3.5 bits;  conditional E-value: 0.12
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHTTHH CS
     HisKA_3  37 kaaeqlreieelarealqevRrllhnLrpaa 67 
                 + + +l+e+e l+real+  R++l++ +p++
  KOO23320.1 537 QDQGKLDEAEPLLREALEAQRATLSDRHPST 567
                 66889*******************9988876 PP

  == domain 2  score: 5.8 bits;  conditional E-value: 0.024
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHTTHH CS
     HisKA_3  37 kaaeqlreieelarealqevRrllhnLrpaa 67 
                 ka+ +l ++e l real+ vR++l++  p++
  KOO23320.1 579 KAQGKLNAAEPLYREALEAVRATLGDRDPTT 609
                 8999********************9877765 PP

  == domain 3  score: 8.8 bits;  conditional E-value: 0.0027
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHTTHH CS
     HisKA_3  37 kaaeqlreieelarealqevRrllhnLrpaa 67 
                 +a+ +l+e+e l+real+ +R++l++ +p++
  KOO23320.1 621 RAQGKLDEAEPLVREALGVMRATLGDRHPDT 651
                 6899*********************998876 PP

  == domain 4  score: 2.0 bits;  conditional E-value: 0.38
                 HHHHHHHHHHHHHHHHHHHHHHHHHH CS
     HisKA_3  38 aaeqlreieelarealqevRrllhnL 63 
                 a+++ +e+e l real+ +R+++++ 
  KOO23320.1 664 AQRKRDEAEPLYREALEAMRATIGDR 689
                 677788999999*********99875 PP

  == domain 5  score: 4.9 bits;  conditional E-value: 0.048
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHTTHH CS
     HisKA_3  37 kaaeqlreieelarealqevRrllhnLrpaa 67 
                 +a+ +l+e+e l real+  R++l++ +p++
  KOO23320.1 705 EAQGKLDEAEPLYREALEAQRATLGDRHPTT 735
                 89***********************999876 PP

>> TPR_3  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.4   0.0     0.011       8.9       7      23 ..     532     548 ..     531     550 .. 0.89
   2 ?   -2.5   0.0       6.9   5.6e+03      14      26 ..     581     591 ..     580     592 .. 0.86
   3 ?   -2.3   0.0       6.1     5e+03      14      21 ..     623     630 ..     622     632 .. 0.85
   4 ?    1.1   0.0      0.51   4.1e+02      14      27 ..     707     718 ..     700     723 .. 0.90
   5 ?    1.7   0.0      0.33   2.7e+02       6      22 ..     741     757 ..     736     759 .. 0.82

  Alignments for each domain:
  == domain 1  score: 6.4 bits;  conditional E-value: 0.011
                 HHHHHHHTT-HHHHHHH CS
       TPR_3   7 yAaefynkkkyqeArel 23 
                 ++a +++++k++eA+ l
  KOO23320.1 532 LGALLQDQGKLDEAEPL 548
                 79************855 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 6.9
                 TT-HHHHHHH..H CS
       TPR_3  14 kkkyqeArelfsY 26 
                 ++k++ A+ l  Y
  KOO23320.1 581 QGKLNAAEPL--Y 591
                 89******99..6 PP

  == domain 3  score: -2.3 bits;  conditional E-value: 6.1
                 TT-HHHHH CS
       TPR_3  14 kkkyqeAr 21 
                 ++k++eA+
  KOO23320.1 623 QGKLDEAE 630
                 9******8 PP

  == domain 4  score: 1.1 bits;  conditional E-value: 0.51
                 TT-HHHHHHH..HH CS
       TPR_3  14 kkkyqeArelfsYa 27 
                 ++k++eA+ l  Y+
  KOO23320.1 707 QGKLDEAEPL--YR 718
                 9*******99..75 PP

  == domain 5  score: 1.7 bits;  conditional E-value: 0.33
                 HHHHHHHHTT-HHHHHH CS
       TPR_3   6 syAaefynkkkyqeAre 22 
                 ++++ ++ ++k++eAr 
  KOO23320.1 741 ALGFFLFHQGKLDEARP 757
                 67788999*******95 PP

>> TetR_C_18  Tetracyclin repressor-like, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.5   0.1       0.5   4.1e+02      27      45 ..     542     560 ..     537     581 .. 0.86
   2 ?    3.1   0.1      0.16   1.3e+02      26      44 ..     583     601 ..     576     663 .. 0.77
   3 ?    1.8   0.1      0.41   3.3e+02      28      48 ..     669     688 ..     663     696 .. 0.80
   4 ?    5.7   0.0     0.024        20      26      44 ..     709     727 ..     702     736 .. 0.85

  Alignments for each domain:
  == domain 1  score: 1.5 bits;  conditional E-value: 0.5
   TetR_C_18  27 ladaaplyrdapeaqdara 45 
                 l++a pl r+a eaq a  
  KOO23320.1 542 LDEAEPLLREALEAQRATL 560
                 8899***********9965 PP

  == domain 2  score: 3.1 bits;  conditional E-value: 0.16
   TetR_C_18  26 aladaaplyrdapeaqdar 44 
                  l+ a plyr+a ea  a 
  KOO23320.1 583 KLNAAEPLYREALEAVRAT 601
                 589999*********9885 PP

  == domain 3  score: 1.8 bits;  conditional E-value: 0.41
   TetR_C_18  28 adaaplyrdapeaqdaraagd 48 
                 ++a plyr+a ea  a  +gd
  KOO23320.1 669 DEAEPLYREALEAMRAT-IGD 688
                 5789*********9885.455 PP

  == domain 4  score: 5.7 bits;  conditional E-value: 0.024
   TetR_C_18  26 aladaaplyrdapeaqdar 44 
                  l++a plyr+a eaq a 
  KOO23320.1 709 KLDEAEPLYREALEAQRAT 727
                 5899************985 PP

>> DUF4404  Domain of unknown function (DUF4404)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.2   0.2    0.0023       1.9      26      79 ..     525     579 ..     483     582 .. 0.90
   2 ?    0.8   0.0      0.95   7.8e+02      31      79 ..     614     663 ..     592     664 .. 0.81
   3 ?    0.5   0.0       1.2   9.5e+02      30      72 ..     697     740 ..     676     744 .. 0.82

  Alignments for each domain:
  == domain 1  score: 9.2 bits;  conditional E-value: 0.0023
     DUF4404  26 Leslaedieellaeedaaaeeee.laerlneaverFeeeHPklagvlreildsLa 79 
                  ++l++ + +ll+++++ +e+e  l e l+ + ++  + HP+    ++++ + L+
  KOO23320.1 525 TSALQNRLGALLQDQGKLDEAEPlLREALEAQRATLSDRHPSTLISMNNLGQLLK 579
                 5789999***********999999************************9999886 PP

  == domain 2  score: 0.8 bits;  conditional E-value: 0.95
     DUF4404  31 edieellaeedaaaeeee.laerlneaverFeeeHPklagvlreildsLa 79 
                 +++ +ll+ +++ +e+e  + e l  + ++  + HP+  + ++++ + L+
  KOO23320.1 614 NNLGNLLRAQGKLDEAEPlVREALGVMRATLGDRHPDTLRSINNLGNLLS 663
                 5577788888888888777889999999999999**99999999988876 PP

  == domain 3  score: 0.5 bits;  conditional E-value: 1.2
     DUF4404  30 aedieellaeedaaaeeee.laerlneaverFeeeHPklagvlr 72 
                 + ++ +ll+ +++ +e+e    e l+ + ++  + HP+    +r
  KOO23320.1 697 MYNLGNLLEAQGKLDEAEPlYREALEAQRATLGDRHPTTLDSMR 740
                 566788999999999988889999999999*******9766665 PP

>> RPN6_N  26S proteasome regulatory subunit RPN6 N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.8   0.1      0.37     3e+02       7      59 ..     539     592 ..     533     602 .. 0.82
   2 ?    4.0   0.0     0.076        62       7      66 ..     581     641 ..     575     644 .. 0.85
   3 ?    5.6   0.1     0.024        20       6      59 ..     665     718 ..     659     728 .. 0.87

  Alignments for each domain:
  == domain 1  score: 1.8 bits;  conditional E-value: 0.37
      RPN6_N   7 s.dpkeaeelykeilskkskedeealreqeqalleLgelyrdqkkaeeLaelik 59 
                 + + +eae l++e l+ + ++ +++  +   ++ +Lg+l+++q+k ++   l +
  KOO23320.1 539 QgKLDEAEPLLREALEAQRATLSDRHPSTLISMNNLGQLLKAQGKLNAAEPLYR 592
                 4478999999*****99999999899999999**********999887766655 PP

  == domain 2  score: 4.0 bits;  conditional E-value: 0.076
      RPN6_N   7 s.dpkeaeelykeilskkskedeealreqeqalleLgelyrdqkkaeeLaelikesrsfls 66 
                 + + ++ae ly+e l+   ++  ++  +  + l +Lg+l+r+q+k +e   l++e   ++ 
  KOO23320.1 581 QgKLNAAEPLYREALEAVRATLGDRDPTTLKFLNNLGNLLRAQGKLDEAEPLVREALGVMR 641
                 44778899999999999998888888888999*********************99988886 PP

  == domain 3  score: 5.6 bits;  conditional E-value: 0.024
      RPN6_N   6 ksdpkeaeelykeilskkskedeealreqeqalleLgelyrdqkkaeeLaelik 59 
                 +++++eae ly+e l+   ++  ++  +  + +++Lg+l+++q+k +e   l +
  KOO23320.1 665 QRKRDEAEPLYREALEAMRATIGDRHSDTLRIMYNLGNLLEAQGKLDEAEPLYR 718
                 45899**************999999******************99998776655 PP

>> MIT  MIT (microtubule interacting and transport) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.3   0.0      0.44   3.6e+02      17      39 ..     581     603 ..     576     615 .. 0.79
   2 ?    2.3   0.0      0.22   1.8e+02      19      39 ..     667     687 ..     663     698 .. 0.76
   3 ?    4.2   0.0     0.057        46      14      33 ..     704     723 ..     701     740 .. 0.87

  Alignments for each domain:
  == domain 1  score: 1.3 bits;  conditional E-value: 0.44
         MIT  17 agnyeeAlelYkealelLlqalk 39 
                 +g+  +A  lY+eale     l 
  KOO23320.1 581 QGKLNAAEPLYREALEAVRATLG 603
                 68999999*******98777665 PP

  == domain 2  score: 2.3 bits;  conditional E-value: 0.22
         MIT  19 nyeeAlelYkealelLlqalk 39 
                 + +eA  lY+eale +   + 
  KOO23320.1 667 KRDEAEPLYREALEAMRATIG 687
                 668999********9988876 PP

  == domain 3  score: 4.2 bits;  conditional E-value: 0.057
         MIT  14 eDnagnyeeAlelYkealel 33 
                 ++ +g+ +eA  lY+eale 
  KOO23320.1 704 LEAQGKLDEAEPLYREALEA 723
                 5789**************95 PP

>> TPR_11  TPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.4   0.1      0.68   5.5e+02       6      22 ..     538     554 ..     533     556 .. 0.79
   2 ?    3.9   0.4     0.052        42       1      22 [.     575     596 ..     575     597 .. 0.93
   3 ?    5.1   0.1     0.022        18       1      13 [.     617     629 ..     617     629 .. 0.97
   4 ?    5.7   0.2     0.015        12       1      22 [.     701     722 ..     695     725 .. 0.88
   5 ?   -1.1   0.0         2   1.6e+03       5      13 ..     747     755 ..     746     756 .. 0.86

  Alignments for each domain:
  == domain 1  score: 0.4 bits;  conditional E-value: 0.68
      TPR_11   6 eqGkyeeAieaYkkAlk 22 
                 +qGk++eA   +++Al+
  KOO23320.1 538 DQGKLDEAEPLLREALE 554
                 8*******777777775 PP

  == domain 2  score: 3.9 bits;  conditional E-value: 0.052
      TPR_11   1 GdayyeqGkyeeAieaYkkAlk 22 
                 G+++ +qGk+++A   Y++Al+
  KOO23320.1 575 GQLLKAQGKLNAAEPLYREALE 596
                 88999***************97 PP

  == domain 3  score: 5.1 bits;  conditional E-value: 0.022
      TPR_11   1 GdayyeqGkyeeA 13 
                 G+++++qGk++eA
  KOO23320.1 617 GNLLRAQGKLDEA 629
                 9***********9 PP

  == domain 4  score: 5.7 bits;  conditional E-value: 0.015
      TPR_11   1 GdayyeqGkyeeAieaYkkAlk 22 
                 G+++ +qGk++eA   Y++Al+
  KOO23320.1 701 GNLLEAQGKLDEAEPLYREALE 722
                 7888899999999999999987 PP

  == domain 5  score: -1.1 bits;  conditional E-value: 2
      TPR_11   5 yeqGkyeeA 13 
                 + qGk++eA
  KOO23320.1 747 FHQGKLDEA 755
                 789*****9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (764 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       455  (0.0253779); expected 358.6 (0.02)
Passed bias filter:                      373  (0.0208043); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                        23  (0.00128284); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              22  [number of targets reported over threshold]
# CPU time: 0.70u 0.28s 00:00:00.98 Elapsed: 00:00:00.50
# Mc/sec: 4619.86
//
Query:       KOO23321.1  [L=340]
Description: hypothetical protein Ctob_000226 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (340 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       446  (0.0248759); expected 358.6 (0.02)
Passed bias filter:                      306  (0.0170673); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.45u 0.25s 00:00:00.70 Elapsed: 00:00:00.42
# Mc/sec: 2457.09
//
Query:       KOO23322.1  [L=284]
Description: hypothetical protein Ctob_000224 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    7.4e-28   98.0   0.0    9.9e-28   97.5   0.0    1.1  1  Glucosamine_iso  Glucosamine-6-phosphate isomerases/6-phospho
  ------ inclusion threshold ------
       0.14   12.0   0.0       0.35   10.7   0.0    1.6  2  Complex1_51K     Respiratory-chain NADH dehydrogenase 51 Kd s


Domain annotation for each model (and alignments):
>> Glucosamine_iso  Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   97.5   0.0   1.1e-31   9.9e-28       2     216 ..      16     230 ..      15     237 .. 0.83

  Alignments for each domain:
  == domain 1  score: 97.5 bits;  conditional E-value: 1.1e-31
                      SHHHHHHHHHHHHHHHHHHHHHHHS-EEEEE--SHCHHHHHHHHHCSG.GGGGS-GGGEEEEESEEESS-TTSTT-HH.HHHHHHTGGGS---G CS
  Glucosamine_iso   2 dkeelaealaarivealeealaergraslalsGGstpkalyealaeeeeaaaaldwskvhvflgDERfVpaddpdsNa.klareallskvkipe 94 
                      d++++ + + ar+ +a++ea+a++g+++la+ GGs+ k+l    a           +  ++ +++   Vp dd++    + a + +l+    + 
       KOO23322.1  16 DADAVGKYVMARVEAAAAEAIAQKGHFALAIPGGSILKMLGGSPAW---------AKDCTLAYVNHKAVPMDDAKLAThAKASKLFLDA--WKG 98 
                      78999999*******************************9999883.........35689*************9876505666777775..666 PP

                      GGEE-S-TTSSTHHHHHHHHHHHHHHHHCC.......SSSSSESEEEE---TTS-BTTB-TTCHH.HHCSSSSEEEESSBSTSSS-EEEE-HHH CS
  Glucosamine_iso  95 anvhpikesaaeapeaaaaayeeelkella.......kelpvfDlvlLGmGpDGHtaSLFPgspe.leetdrlvvavedspkpppeRitlTlpv 180
                        ++ +    +e++ a+a ayee+++++ +          p fD++l G+G+DGH+ SL+Pg +e l+ + r+v++ve   k++p  itl+lpv
       KOO23322.1  99 IDCILMSG--SEDAVAEAVAYEEKMRAVPPsklpvnpAGYPIFDMMLIGVGDDGHVGSLYPGRDEvLDASGRWVLPVE---KKQPGSITLSLPV 187
                      67888864..4457999*********9877******999**************************778999******6...777899******* PP

                      HTTCSEEEEEEES......HHHHHHHHHHHTT...TTTSGGGG CS
  Glucosamine_iso 181 lnsarevlflvaG......eeKaealeevlsged.peelPaal 216
                      +++a+evl+ ++G      ++K++a+++ ++g++ p++ Pa  
       KOO23322.1 188 MAAAKEVLIAACGvsdkypQGKSAAMARGIEGDEtPSSFPAVG 230
                      *************544444457777777776443144556655 PP

>> Complex1_51K  Respiratory-chain NADH dehydrogenase 51 Kd subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.0      0.77   6.9e+03     113     134 ..     105     130 ..     101     135 .. 0.69
   2 ?   10.7   0.0   3.9e-05      0.35      76     133 ..     173     227 ..     163     238 .. 0.78

  Alignments for each domain:
  == domain 1  score: -3.2 bits;  conditional E-value: 0.77
  Complex1_51K 113 aGeekaLiesltgr....evprgkpp 134
                   +G+e+a+ e++  +    +vp+ k+p
    KOO23322.1 105 SGSEDAVAEAVAYEekmrAVPPSKLP 130
                   68888888888766555566766666 PP

  == domain 2  score: 10.7 bits;  conditional E-value: 3.9e-05
  Complex1_51K  76 vrdekpeaiealekalaeakaaglldievvklagkYpaGeekaLiesltgrevprgkp 133
                   v++++p +i      +a+ak+   + i  + + +kYp+G++ a+ + ++g e p+  p
    KOO23322.1 173 VEKKQPGSITLSLPVMAAAKE---VLIAACGVSDKYPQGKSAAMARGIEGDETPSSFP 227
                   666666666666666666665...67999999*******************9998754 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (284 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       227  (0.0126611); expected 358.6 (0.02)
Passed bias filter:                      198  (0.0110436); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.41u 0.23s 00:00:00.64 Elapsed: 00:00:00.39
# Mc/sec: 2204.64
//
Query:       KOO23323.1  [L=415]
Description: hypothetical protein Ctob_000225 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (415 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       428  (0.0238719); expected 358.6 (0.02)
Passed bias filter:                      370  (0.020637); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.48u 0.23s 00:00:00.71 Elapsed: 00:00:00.40
# Mc/sec: 3096.41
//
Query:       KOO23324.1  [L=887]
Description: tpr repeat-containing protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.3e-74  243.5  27.5    1.7e-12   46.8   0.0    8.7  8  TPR_10    Tetratricopeptide repeat
      4e-69  228.9  29.0    3.5e-16   59.2   1.1    5.8  5  TPR_12    Tetratricopeptide repeat
    3.6e-25   86.7   6.0     0.0055   16.5   0.0    8.5  8  TPR_1     Tetratricopeptide repeat
    1.5e-22   80.5   9.2      1e-08   34.9   2.2    3.5  3  TPR_MalT  MalT-like TPR region
    4.8e-20   70.1  14.3     0.0073   16.3   0.0    8.5  8  TPR_7     Tetratricopeptide repeat
    2.7e-19   67.7   8.1      0.007   16.5   0.0    8.6  8  TPR_8     Tetratricopeptide repeat
    4.3e-18   63.9  13.3       0.18   12.0   0.0    8.9  8  TPR_2     Tetratricopeptide repeat
    3.1e-12   45.9  27.5      0.028   15.0   0.2   10.1  8  TPR_4     Tetratricopeptide repeat
    1.4e-09   37.7   0.0        1.5    8.9   0.0    6.7  7  TPR_3     Tetratricopeptide repeat
    4.2e-09   36.5   6.8        5.3    7.4   0.0    6.9  7  Osmo_CC   Osmosensory transporter coiled coil
      5e-09   35.9   8.5        8.4    7.0   0.0    7.9  8  TPR_17    Tetratricopeptide repeat
    2.2e-06   28.2  38.0      0.021   15.5   0.2    8.7  8  TPR_16    Tetratricopeptide repeat
    2.6e-05   24.6  21.0       0.15   12.6   1.1    5.4  5  TPR_19    Tetratricopeptide repeat
    5.2e-05   23.7  36.0       0.44   11.5   0.3    9.3  8  TPR_14    Tetratricopeptide repeat
     0.0012   19.1  13.5       0.46   10.7   1.3    5.0  4  TPR_5     Tetratrico peptide repeat
  ------ inclusion threshold ------
      0.053   13.9   0.3         13    6.2   0.0    3.4  4  RPN6_N    26S proteasome regulatory subunit RPN6 N-terminal d
       0.12   12.6   0.0          8    6.7   0.0    3.4  4  BRCC36_C  BRCC36 C-terminal helical domain
       0.35   10.6   7.1         66    3.3   0.0    6.0  7  TPR_11    TPR repeat


Domain annotation for each model (and alignments):
>> TPR_10  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.5   0.3   1.1e-10   1.1e-07       5      42 .]     595     632 ..     591     632 .. 0.96
   2 !   46.8   0.0   1.7e-15   1.7e-12       1      42 []     633     674 ..     633     674 .. 0.98
   3 !   43.6   0.6   1.6e-14   1.6e-11       1      42 []     675     716 ..     675     716 .. 0.99
   4 !   29.3   0.6   5.3e-10   5.3e-07       1      42 []     717     758 ..     717     758 .. 0.98
   5 !   38.2   0.0   8.4e-13   8.4e-10       4      42 .]     762     800 ..     759     800 .. 0.97
   6 !   25.2   0.0     1e-08     1e-05       1      30 [.     801     830 ..     801     830 .. 0.97
   7 !   23.8   0.6   2.9e-08   2.9e-05      12      41 ..     829     858 ..     828     859 .. 0.94
   8 !   20.2   0.1   3.9e-07   0.00039       1      28 [.     860     887 .]     860     887 .] 0.94

  Alignments for each domain:
  == domain 1  score: 31.5 bits;  conditional E-value: 1.1e-10
      TPR_10   5 lnNLanalrqrgrydeAealleealairrrllGpdHPd 42 
                 +n L+++l+++g++deAe l +e l+++r++lG+ HPd
  KOO23324.1 595 QNQLGMLLHAQGKLDEAEPLWREELEAQRATLGDRHPD 632
                 8************************************9 PP

  == domain 2  score: 46.8 bits;  conditional E-value: 1.7e-15
      TPR_10   1 tAsslnNLanalrqrgrydeAealleealairrrllGpdHPd 42 
                 t+ s nNL+ +l ++g+++eAe ll+eal++rr+++G+ HPd
  KOO23324.1 633 TLGSINNLGSLLKSQGKLEEAEPLLREALETRRATVGDRHPD 674
                 899**************************************9 PP

  == domain 3  score: 43.6 bits;  conditional E-value: 1.6e-14
      TPR_10   1 tAsslnNLanalrqrgrydeAealleealairrrllGpdHPd 42 
                 t+++ nNL+++l+++g++deAe l +eal++rr++lG+ HPd
  KOO23324.1 675 TLAAINNLGALLQDQGKLDEAEPLKREALEARRATLGDRHPD 716
                 899**************************************9 PP

  == domain 4  score: 29.3 bits;  conditional E-value: 5.3e-10
      TPR_10   1 tAsslnNLanalrqrgrydeAealleealairrrllGpdHPd 42 
                 t++s +NL+ +l+++g+++eA  l +eal++ r++lG+ HP+
  KOO23324.1 717 TLASIHNLGSLLHHQGKLNEAGPLRREALEAMRATLGDRHPN 758
                 89***************************************5 PP

  == domain 5  score: 38.2 bits;  conditional E-value: 8.4e-13
      TPR_10   4 slnNLanalrqrgrydeAealleealairrrllGpdHPd 42 
                 s n L+ +l ++g++deAe l +eal++rr++lG+ HPd
  KOO23324.1 762 SINALGGLLKDQGKLDEAEPLVREALEVRRATLGDRHPD 800
                 689***********************************9 PP

  == domain 6  score: 25.2 bits;  conditional E-value: 1e-08
      TPR_10   1 tAsslnNLanalrqrgrydeAealleeala 30 
                 t++s +NL+ +l+++g++deAe l +eal+
  KOO23324.1 801 TLTSISNLGSLLQNQGKLDEAEPLVREALE 830
                 89**************************96 PP

  == domain 7  score: 23.8 bits;  conditional E-value: 2.9e-08
      TPR_10  12 lrqrgrydeAealleealairrrllGpdHP 41 
                 l ++g++deAe l +eal++ r++lG+ HP
  KOO23324.1 829 LENQGKLDEAEPLVREALEAKRATLGDRHP 858
                 679**************************9 PP

  == domain 8  score: 20.2 bits;  conditional E-value: 3.9e-07
      TPR_10   1 tAsslnNLanalrqrgrydeAealleea 28 
                 t++s  NL+++l+++g++deAe l++ a
  KOO23324.1 860 TLASIGNLGALLHAQGKLDEAEPLYRNA 887
                 899*********************9865 PP

>> TPR_12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.2   1.1   3.5e-19   3.5e-16       3      76 ..     592     665 ..     590     666 .. 0.96
   2 !   56.9   2.7   1.9e-18   1.9e-15       2      76 ..     675     749 ..     674     750 .. 0.96
   3 !   58.5   0.7     6e-19     6e-16       2      76 ..     717     791 ..     716     792 .. 0.95
   4 !   58.5   0.0     6e-19     6e-16       3      73 ..     760     830 ..     759     832 .. 0.96
   5 !   46.9   1.1   2.5e-15   2.4e-12      12      69 ..     828     885 ..     827     887 .] 0.96

  Alignments for each domain:
  == domain 1  score: 59.2 bits;  conditional E-value: 3.5e-19
      TPR_12   3 atalnnlaavlrrlgrydeAlellekaleiarrllGpdhpltattlrnLgrlyralgryeeAlelleealaiae 76 
                 + ++n+l+++l+++g++deA+ l ++ le++r++lG+ hp+t+ + +nLg l+  +g++eeA+ ll+eal+ ++
  KOO23324.1 592 SELQNQLGMLLHAQGKLDEAEPLWREELEAQRATLGDRHPDTLGSINNLGSLLKSQGKLEEAEPLLREALETRR 665
                 578999*****************************************************************987 PP

  == domain 2  score: 56.9 bits;  conditional E-value: 1.9e-18
      TPR_12   2 vatalnnlaavlrrlgrydeAlellekaleiarrllGpdhpltattlrnLgrlyralgryeeAlelleealaiae 76 
                 +++a nnl+a+l+ +g++deA+ l ++ale++r++lG+ hp+t+++ +nLg l++ +g++ eA  l +eal++++
  KOO23324.1 675 TLAAINNLGALLQDQGKLDEAEPLKREALEARRATLGDRHPDTLASIHNLGSLLHHQGKLNEAGPLRREALEAMR 749
                 678888****************************************************************99987 PP

  == domain 3  score: 58.5 bits;  conditional E-value: 6e-19
      TPR_12   2 vatalnnlaavlrrlgrydeAlellekaleiarrllGpdhpltattlrnLgrlyralgryeeAlelleealaiae 76 
                 ++++ +nl+++l+++g++ eA  l ++ale++r++lG+ hp+t+ + ++Lg l+  +g+++eA+ l +eal++++
  KOO23324.1 717 TLASIHNLGSLLHHQGKLNEAGPLRREALEAMRATLGDRHPNTLCSINALGGLLKDQGKLDEAEPLVREALEVRR 791
                 556667******************************************************************998 PP

  == domain 4  score: 58.5 bits;  conditional E-value: 6e-19
      TPR_12   3 atalnnlaavlrrlgrydeAlellekaleiarrllGpdhpltattlrnLgrlyralgryeeAlelleeala 73 
                 +++ n l+ +l  +g++deA+ l ++ale++r++lG+ hp+t+t+  nLg l++ +g+++eA+ l +eal+
  KOO23324.1 760 LCSINALGGLLKDQGKLDEAEPLVREALEVRRATLGDRHPDTLTSISNLGSLLQNQGKLDEAEPLVREALE 830
                 677879****************************************************************8 PP

  == domain 5  score: 46.9 bits;  conditional E-value: 2.5e-15
      TPR_12  12 vlrrlgrydeAlellekaleiarrllGpdhpltattlrnLgrlyralgryeeAlelle 69 
                 +l  +g++deA+ l ++ale+ r++lG+ hp+t+++  nLg l++a+g+++eA+ l++
  KOO23324.1 828 ALENQGKLDEAEPLVREALEAKRATLGDRHPYTLASIGNLGALLHAQGKLDEAEPLYR 885
                 6788****************************************************97 PP

>> TPR_1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.8   0.0   0.00072      0.72       3      23 ..     594     614 ..     592     617 .. 0.85
   2 !   16.5   0.0   5.5e-06    0.0055       5      29 ..     638     662 ..     636     665 .. 0.95
   3 !   11.7   0.1   0.00017      0.17       3      23 ..     678     698 ..     677     706 .. 0.83
   4 ?    4.2   0.0      0.04        40       6      20 ..     723     737 ..     720     739 .. 0.95
   5 !    8.2   0.0    0.0024       2.3       6      30 ..     765     789 ..     762     791 .. 0.90
   6 !   12.8   0.0     8e-05      0.08       5      29 ..     806     830 ..     804     832 .. 0.94
   7 ?    5.4   0.1     0.017        17      10      29 ..     828     847 ..     827     850 .. 0.91
   8 !   14.2   0.0     3e-05      0.03       6      27 ..     866     887 .]     863     887 .] 0.95

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.00072
                 HHHHHHHHHHHTT-HHHHHHH CS
       TPR_1   3 alynlGnayfklgkydeAley 23 
                   ++lG++++ +gk+deA+  
  KOO23324.1 594 LQNQLGMLLHAQGKLDEAEPL 614
                 5689**************865 PP

  == domain 2  score: 16.5 bits;  conditional E-value: 5.5e-06
                 HHHHHHHHHTT-HHHHHHHHHHHHH CS
       TPR_1   5 ynlGnayfklgkydeAleyyekALe 29 
                 +nlG ++ ++gk++eA+   ++ALe
  KOO23324.1 638 NNLGSLLKSQGKLEEAEPLLREALE 662
                 8***********************9 PP

  == domain 3  score: 11.7 bits;  conditional E-value: 0.00017
                 HHHHHHHHHHHTT-HHHHHHH CS
       TPR_1   3 alynlGnayfklgkydeAley 23 
                 a +nlG++++ +gk+deA+  
  KOO23324.1 678 AINNLGALLQDQGKLDEAEPL 698
                 569***************865 PP

  == domain 4  score: 4.2 bits;  conditional E-value: 0.04
                 HHHHHHHHTT-HHHH CS
       TPR_1   6 nlGnayfklgkydeA 20 
                 nlG +++++gk++eA
  KOO23324.1 723 NLGSLLHHQGKLNEA 737
                 9*************9 PP

  == domain 5  score: 8.2 bits;  conditional E-value: 0.0024
                 HHHHHHHHTT-HHHHHHHHHHHHHH CS
       TPR_1   6 nlGnayfklgkydeAleyyekALel 30 
                  lG ++  +gk+deA+   ++ALe+
  KOO23324.1 765 ALGGLLKDQGKLDEAEPLVREALEV 789
                 588899*****************97 PP

  == domain 6  score: 12.8 bits;  conditional E-value: 8e-05
                 HHHHHHHHHTT-HHHHHHHHHHHHH CS
       TPR_1   5 ynlGnayfklgkydeAleyyekALe 29 
                  nlG +++++gk+deA+   ++ALe
  KOO23324.1 806 SNLGSLLQNQGKLDEAEPLVREALE 830
                 69*******************9998 PP

  == domain 7  score: 5.4 bits;  conditional E-value: 0.017
                 HHHHTT-HHHHHHHHHHHHH CS
       TPR_1  10 ayfklgkydeAleyyekALe 29 
                 a+ ++gk+deA+   ++ALe
  KOO23324.1 828 ALENQGKLDEAEPLVREALE 847
                 7899***********99998 PP

  == domain 8  score: 14.2 bits;  conditional E-value: 3e-05
                 HHHHHHHHTT-HHHHHHHHHHH CS
       TPR_1   6 nlGnayfklgkydeAleyyekA 27 
                 nlG++++ +gk+deA+  y+ A
  KOO23324.1 866 NLGALLHAQGKLDEAEPLYRNA 887
                 9******************987 PP

>> TPR_MalT  MalT-like TPR region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.9   2.2     1e-11     1e-08      24     153 ..     577     707 ..     570     715 .. 0.89
   2 !   33.3   0.0   3.4e-11   3.4e-08      39     150 ..     717     830 ..     709     831 .. 0.76
   3 !   16.4   0.1   4.5e-06    0.0045      89     144 ..     828     883 ..     825     887 .] 0.77

  Alignments for each domain:
  == domain 1  score: 34.9 bits;  conditional E-value: 1e-11
    TPR_MalT  24 ArqALallpeddllariaatavlGeasllqGdleaAlqalq...eaeklarqadslhvallallqqaeilvaqGrLheAletyeqalqlateqglqqlp 119
                  r+ALa++p ++  ++ +    lG   + qG+l++A+  ++   ea++++++  +++ +l ++  ++ +l  qG+L+eA+ + ++al+  + + + + p
  KOO23324.1 577 GRAALARMPREERATSELQ-NQLGMLLHAQGKLDEAEPLWReelEAQRATLGDRHPD-TLGSINNLGSLLKSQGKLEEAEPLLREALETRRATVGDRHP 673
                 5899*****9998888888.556******************7666777777777776.***************************************** PP

    TPR_MalT 120 lvgfllvlladllyEwndLeeAeqhlqeGielle 153
                     +   l+ ll ++++L+eAe   +e++e  +
  KOO23324.1 674 DTLAAINNLGALLQDQGKLDEAEPLKREALEARR 707
                 999999*****************99999998766 PP

  == domain 2  score: 33.3 bits;  conditional E-value: 3.4e-11
    TPR_MalT  39 riaatavlGeasllqGdleaAlqalqeaekl..arqadslhvallallqqaeilvaqGrLheAletyeqalqlateqglqqlplvgfllvlladllyEw 135
                  +a   +lG   ++qG+l++A    +ea ++  a   d+ +++l ++  ++ +l  qG+L+eA+ + ++al++ + + + + p        l+ ll  +
  KOO23324.1 717 TLASIHNLGSLLHHQGKLNEAGPLRREALEAmrATLGDRHPNTLCSINALGGLLKDQGKLDEAEPLVREALEVRRATLGDRHPDTLTSISNLGSLLQNQ 815
                 445556788888999999999888887775423334455555899999999999999999999999999999999999999988887778889999999 PP

    TPR_MalT 136 ndLeeAeqhlqeGie 150
                 ++L+eAe  ++e++e
  KOO23324.1 816 GKLDEAEPLVREALE 830
                 999999988888765 PP

  == domain 3  score: 16.4 bits;  conditional E-value: 4.5e-06
    TPR_MalT  89 ilvaqGrLheAletyeqalqlateqglqqlplvgfllvlladllyEwndLeeAeqh 144
                  l  qG+L+eA+ + ++al+  + + + + p        l+ ll+ +++L+eAe  
  KOO23324.1 828 ALENQGKLDEAEPLVREALEAKRATLGDRHPYTLASIGNLGALLHAQGKLDEAEPL 883
                 56778888888888888888888888888888888888888888888888888754 PP

>> TPR_7  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.5   0.1      0.18   1.8e+02       3      25 ..     596     618 ..     594     629 .. 0.82
   2 !   16.3   0.0   7.4e-06    0.0073       1      30 [.     636     665 ..     636     670 .. 0.92
   3 !   10.6   0.2   0.00047      0.46       1      31 [.     678     708 ..     678     713 .. 0.86
   4 !    9.5   0.0    0.0011       1.1       1      33 [.     720     753 ..     720     755 .. 0.87
   5 !    9.8   0.0   0.00083      0.82       1      33 [.     762     794 ..     762     797 .. 0.89
   6 !   11.9   0.0   0.00017      0.17       1      29 [.     804     830 ..     804     832 .. 0.88
   7 ?    3.2   0.1      0.11   1.1e+02       8      30 ..     828     850 ..     826     856 .. 0.80
   8 !    9.8   0.0   0.00086      0.86       1      24 [.     863     886 ..     863     887 .] 0.92

  Alignments for each domain:
  == domain 1  score: 2.5 bits;  conditional E-value: 0.18
       TPR_7   3 lnLarlysrlGdyeeAielyeqs 25 
                 ++L+ l +++G+ +eA+ l ++ 
  KOO23324.1 596 NQLGMLLHAQGKLDEAEPLWREE 618
                 689*************9987774 PP

  == domain 2  score: 16.3 bits;  conditional E-value: 7.4e-06
       TPR_7   1 aLlnLarlysrlGdyeeAielyeqsLaltk 30 
                 +++nL++l  ++G+ eeA+ l++++L++++
  KOO23324.1 636 SINNLGSLLKSQGKLEEAEPLLREALETRR 665
                 689*********************999886 PP

  == domain 3  score: 10.6 bits;  conditional E-value: 0.00047
       TPR_7   1 aLlnLarlysrlGdyeeAielyeqsLaltkd 31 
                 a++nL+ l +++G+ +eA+ l +++L+ +++
  KOO23324.1 678 AINNLGALLQDQGKLDEAEPLKREALEARRA 708
                 689*****************99998877765 PP

  == domain 4  score: 9.5 bits;  conditional E-value: 0.0011
       TPR_7   1 aLlnLarlysrlGdyeeAielyeqsL.altkdpe 33 
                 +++nL++l + +G+  eA  l +++L a++   +
  KOO23324.1 720 SIHNLGSLLHHQGKLNEAGPLRREALeAMRATLG 753
                 689***********************88776655 PP

  == domain 5  score: 9.8 bits;  conditional E-value: 0.00083
       TPR_7   1 aLlnLarlysrlGdyeeAielyeqsLaltkdpe 33 
                 ++++L+ l  ++G+ +eA+ l +++L+++++ +
  KOO23324.1 762 SINALGGLLKDQGKLDEAEPLVREALEVRRATL 794
                 579*********************999988765 PP

  == domain 6  score: 11.9 bits;  conditional E-value: 0.00017
       TPR_7   1 aLlnLarlysrlGdyeeAielyeqsLalt 29 
                 +++nL++l +++G+ +eA+ l ++  al+
  KOO23324.1 804 SISNLGSLLQNQGKLDEAEPLVRE--ALE 830
                 579******************999..554 PP

  == domain 7  score: 3.2 bits;  conditional E-value: 0.11
       TPR_7   8 lysrlGdyeeAielyeqsLaltk 30 
                 + +++G+ +eA+ l +++L+  +
  KOO23324.1 828 ALENQGKLDEAEPLVREALEAKR 850
                 6789*************886555 PP

  == domain 8  score: 9.8 bits;  conditional E-value: 0.00086
       TPR_7   1 aLlnLarlysrlGdyeeAielyeq 24 
                 ++ nL+ l +++G+ +eA+ ly+ 
  KOO23324.1 863 SIGNLGALLHAQGKLDEAEPLYRN 886
                 578*******************86 PP

>> TPR_8  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.1   0.0     0.015        15       2      21 ..     593     612 ..     592     616 .. 0.90
   2 !   16.5   0.0     7e-06     0.007       4      32 ..     637     665 ..     634     667 .. 0.90
   3 !    7.8   0.1    0.0043       4.3       3      32 ..     678     707 ..     676     709 .. 0.89
   4 ?    4.7   0.0     0.043        42       4      22 ..     721     739 ..     718     747 .. 0.80
   5 !    9.1   0.0    0.0016       1.6       5      32 ..     764     791 ..     762     793 .. 0.90
   6 !   10.3   0.0    0.0007       0.7       6      29 ..     807     830 ..     803     831 .. 0.93
   7 ?    6.0   0.1     0.017        17      10      33 ..     828     851 ..     827     852 .. 0.90
   8 ?    5.4   0.0     0.025        25       5      27 ..     865     887 .]     861     887 .] 0.89

  Alignments for each domain:
  == domain 1  score: 6.1 bits;  conditional E-value: 0.015
                 CHHHHHHHHHHHTT-HHHHH CS
       TPR_8   2 eayynlgsiylklgdyeeAk 21 
                 e+ ++lg++++ +g+++eA+
  KOO23324.1 593 ELQNQLGMLLHAQGKLDEAE 612
                 67799**************7 PP

  == domain 2  score: 16.5 bits;  conditional E-value: 7e-06
                 HHHHHHHHHHTT-HHHHHHHHHHHHHHHH CS
       TPR_8   4 yynlgsiylklgdyeeAkeyyekaleldp 32 
                  +nlgs+++++g++eeA+  +++ale ++
  KOO23324.1 637 INNLGSLLKSQGKLEEAEPLLREALETRR 665
                 68***********************9765 PP

  == domain 3  score: 7.8 bits;  conditional E-value: 0.0043
                 HHHHHHHHHHHTT-HHHHHHHHHHHHHHHH CS
       TPR_8   3 ayynlgsiylklgdyeeAkeyyekaleldp 32 
                 a +nlg +++++g+++eA+   ++ale+++
  KOO23324.1 678 AINNLGALLQDQGKLDEAEPLKREALEARR 707
                 678****************99999999876 PP

  == domain 4  score: 4.7 bits;  conditional E-value: 0.043
                 HHHHHHHHHHTT-HHHHHH CS
       TPR_8   4 yynlgsiylklgdyeeAke 22 
                  +nlgs+++ +g+++eA  
  KOO23324.1 721 IHNLGSLLHHQGKLNEAGP 739
                 68**************965 PP

  == domain 5  score: 9.1 bits;  conditional E-value: 0.0016
                 HHHHHHHHHTT-HHHHHHHHHHHHHHHH CS
       TPR_8   5 ynlgsiylklgdyeeAkeyyekaleldp 32 
                 + lg +++++g+++eA+   ++ale ++
  KOO23324.1 764 NALGGLLKDQGKLDEAEPLVREALEVRR 791
                 67999********************987 PP

  == domain 6  score: 10.3 bits;  conditional E-value: 0.0007
                 HHHHHHHHTT-HHHHHHHHHHHHH CS
       TPR_8   6 nlgsiylklgdyeeAkeyyekale 29 
                 nlgs+++++g+++eA+   ++ale
  KOO23324.1 807 NLGSLLQNQGKLDEAEPLVREALE 830
                 8******************99997 PP

  == domain 7  score: 6.0 bits;  conditional E-value: 0.017
                 HHHHTT-HHHHHHHHHHHHHHHHH CS
       TPR_8  10 iylklgdyeeAkeyyekaleldpd 33 
                 +++++g+++eA+   ++ale++++
  KOO23324.1 828 ALENQGKLDEAEPLVREALEAKRA 851
                 6899****************9875 PP

  == domain 8  score: 5.4 bits;  conditional E-value: 0.025
                 HHHHHHHHHTT-HHHHHHHHHHH CS
       TPR_8   5 ynlgsiylklgdyeeAkeyyeka 27 
                  nlg +++ +g+++eA+  y+ a
  KOO23324.1 865 GNLGALLHAQGKLDEAEPLYRNA 887
                 699**************999865 PP

>> TPR_2  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.2   0.1   0.00067      0.67       2      28 ..     593     619 ..     592     623 .. 0.87
   2 !   12.0   0.0   0.00018      0.18       5      29 ..     638     662 ..     636     665 .. 0.94
   3 !    7.5   0.2    0.0051       5.1       3      29 ..     678     704 ..     677     707 .. 0.84
   4 ?    2.9   0.0      0.15   1.5e+02       5      20 ..     722     737 ..     719     748 .. 0.87
   5 !    7.7   0.0    0.0042       4.2       5      29 ..     764     788 ..     762     791 .. 0.91
   6 !   10.8   0.0   0.00043      0.43       5      29 ..     806     830 ..     804     831 .. 0.94
   7 !    6.9   0.1    0.0077       7.7      10      29 ..     828     847 ..     827     850 .. 0.92
   8 !    8.8   0.1     0.002       1.9       6      27 ..     866     887 .]     864     887 .] 0.94

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.00067
       TPR_2   2 ealynlGlayyklgdyeeAleafekAl 28 
                 e+ ++lG+++ ++g+++eA+ ++++ l
  KOO23324.1 593 ELQNQLGMLLHAQGKLDEAEPLWREEL 619
                 67899***************9999866 PP

  == domain 2  score: 12.0 bits;  conditional E-value: 0.00018
       TPR_2   5 ynlGlayyklgdyeeAleafekAle 29 
                 +nlG ++  +g++eeA+ ++++Ale
  KOO23324.1 638 NNLGSLLKSQGKLEEAEPLLREALE 662
                 79**********************8 PP

  == domain 3  score: 7.5 bits;  conditional E-value: 0.0051
       TPR_2   3 alynlGlayyklgdyeeAleafekAle 29 
                 a +nlG ++  +g+++eA+ + ++Ale
  KOO23324.1 678 AINNLGALLQDQGKLDEAEPLKREALE 704
                 568***************977666665 PP

  == domain 4  score: 2.9 bits;  conditional E-value: 0.15
       TPR_2   5 ynlGlayyklgdyeeA 20 
                 +nlG ++ ++g+++eA
  KOO23324.1 722 HNLGSLLHHQGKLNEA 737
                 79*************9 PP

  == domain 5  score: 7.7 bits;  conditional E-value: 0.0042
       TPR_2   5 ynlGlayyklgdyeeAleafekAle 29 
                 ++lG ++  +g+++eA+ + ++Ale
  KOO23324.1 764 NALGGLLKDQGKLDEAEPLVREALE 788
                 579999******************8 PP

  == domain 6  score: 10.8 bits;  conditional E-value: 0.00043
       TPR_2   5 ynlGlayyklgdyeeAleafekAle 29 
                  nlG ++ ++g+++eA+ + ++Ale
  KOO23324.1 806 SNLGSLLQNQGKLDEAEPLVREALE 830
                 59*********************98 PP

  == domain 7  score: 6.9 bits;  conditional E-value: 0.0077
       TPR_2  10 ayyklgdyeeAleafekAle 29 
                 a++++g+++eA+ + ++Ale
  KOO23324.1 828 ALENQGKLDEAEPLVREALE 847
                 799****************8 PP

  == domain 8  score: 8.8 bits;  conditional E-value: 0.002
       TPR_2   6 nlGlayyklgdyeeAleafekA 27 
                 nlG ++ ++g+++eA+ +++ A
  KOO23324.1 866 NLGALLHAQGKLDEAEPLYRNA 887
                 89*****************987 PP

>> TPR_4  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.2   2.8e-05     0.028       6      26 .]     597     617 ..     593     617 .. 0.92
   2 ?    4.5   0.0     0.068        67       7      26 .]     640     659 ..     639     659 .. 0.82
   3 !    7.4   0.0     0.008         8       6      22 ..     681     697 ..     680     700 .. 0.92
   4 ?    1.2   0.0      0.79   7.8e+02       6      23 ..     723     740 ..     722     743 .. 0.81
   5 ?    5.0   0.1     0.049        48       7      26 .]     766     785 ..     765     785 .. 0.86
   6 !    7.8   0.0    0.0061       6.1       6      26 .]     807     827 ..     806     827 .. 0.92
   7 ?    4.3   0.0      0.08        80       9      26 .]     827     844 ..     827     844 .. 0.89
   8 !   12.7   0.1   0.00015      0.15       6      25 ..     866     885 ..     865     886 .. 0.93

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 2.8e-05
       TPR_4   6 aLArallalGdldeAraller 26 
                  L+++l+a+G ldeA+ l+++
  KOO23324.1 597 QLGMLLHAQGKLDEAEPLWRE 617
                 69*****************97 PP

  == domain 2  score: 4.5 bits;  conditional E-value: 0.068
       TPR_4   7 LArallalGdldeAraller 26 
                 L+ +l  +G l+eA+ ll++
  KOO23324.1 640 LGSLLKSQGKLEEAEPLLRE 659
                 56666679**********97 PP

  == domain 3  score: 7.4 bits;  conditional E-value: 0.008
       TPR_4   6 aLArallalGdldeAra 22 
                 +L+ +l+++G ldeA+ 
  KOO23324.1 681 NLGALLQDQGKLDEAEP 697
                 79*************96 PP

  == domain 4  score: 1.2 bits;  conditional E-value: 0.79
       TPR_4   6 aLArallalGdldeAral 23 
                 +L+ +l+++G l eA  l
  KOO23324.1 723 NLGSLLHHQGKLNEAGPL 740
                 8999******99888665 PP

  == domain 5  score: 5.0 bits;  conditional E-value: 0.049
       TPR_4   7 LArallalGdldeAraller 26 
                 L+ +l ++G ldeA+ l+++
  KOO23324.1 766 LGGLLKDQGKLDEAEPLVRE 785
                 6667889*********9996 PP

  == domain 6  score: 7.8 bits;  conditional E-value: 0.0061
       TPR_4   6 aLArallalGdldeAraller 26 
                 +L+ +l+ +G ldeA+ l+++
  KOO23324.1 807 NLGSLLQNQGKLDEAEPLVRE 827
                 8999*************9996 PP

  == domain 7  score: 4.3 bits;  conditional E-value: 0.08
       TPR_4   9 rallalGdldeAraller 26 
                 +al  +G ldeA+ l+++
  KOO23324.1 827 EALENQGKLDEAEPLVRE 844
                 57889*********9996 PP

  == domain 8  score: 12.7 bits;  conditional E-value: 0.00015
       TPR_4   6 aLArallalGdldeAralle 25 
                 +L+ +l+a+G ldeA+ l +
  KOO23324.1 866 NLGALLHAQGKLDEAEPLYR 885
                 89**************9987 PP

>> TPR_3  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.3   0.0     0.087        87       7      22 ..     598     613 ..     597     616 .. 0.85
   2 ?    6.0   0.0     0.012        12       7      21 ..     682     696 ..     679     698 .. 0.91
   3 ?    2.4   0.0      0.17   1.7e+02       2      20 ..     719     737 ..     718     738 .. 0.91
   4 ?   -2.3   0.0         5     5e+03      14      21 ..     773     780 ..     772     782 .. 0.84
   5 !    6.9   0.0    0.0063       6.2       4      21 ..     805     822 ..     803     824 .. 0.87
   6 ?   -1.3   0.0       2.3   2.3e+03      13      21 ..     831     839 ..     831     841 .. 0.87
   7 !    8.9   0.0    0.0015       1.5       7      27 ..     867     885 ..     861     886 .. 0.91

  Alignments for each domain:
  == domain 1  score: 3.3 bits;  conditional E-value: 0.087
                 HHHHHHHTT-HHHHHH CS
       TPR_3   7 yAaefynkkkyqeAre 22 
                 ++  ++ ++k++eA+ 
  KOO23324.1 598 LGMLLHAQGKLDEAEP 613
                 57789*********85 PP

  == domain 2  score: 6.0 bits;  conditional E-value: 0.012
                 HHHHHHHTT-HHHHH CS
       TPR_3   7 yAaefynkkkyqeAr 21 
                 ++a +++++k++eA+
  KOO23324.1 682 LGALLQDQGKLDEAE 696
                 79************8 PP

  == domain 3  score: 2.4 bits;  conditional E-value: 0.17
                 HHHHHHHHHHHHTT-HHHH CS
       TPR_3   2 dylysyAaefynkkkyqeA 20 
                  +++ ++  ++ ++k++eA
  KOO23324.1 719 ASIHNLGSLLHHQGKLNEA 737
                 57999************99 PP

  == domain 4  score: -2.3 bits;  conditional E-value: 5
                 TT-HHHHH CS
       TPR_3  14 kkkyqeAr 21 
                 ++k++eA+
  KOO23324.1 773 QGKLDEAE 780
                 9******8 PP

  == domain 5  score: 6.9 bits;  conditional E-value: 0.0063
                 HHHHHHHHHHTT-HHHHH CS
       TPR_3   4 lysyAaefynkkkyqeAr 21 
                 +  ++  ++n++k++eA+
  KOO23324.1 805 ISNLGSLLQNQGKLDEAE 822
                 6678999**********8 PP

  == domain 6  score: -1.3 bits;  conditional E-value: 2.3
                 HTT-HHHHH CS
       TPR_3  13 nkkkyqeAr 21 
                 n++k++eA+
  KOO23324.1 831 NQGKLDEAE 839
                 89******8 PP

  == domain 7  score: 8.9 bits;  conditional E-value: 0.0015
                 HHHHHHHTT-HHHHHHH..HH CS
       TPR_3   7 yAaefynkkkyqeArelfsYa 27 
                 ++a ++ ++k++eA+ l  Y+
  KOO23324.1 867 LGALLHAQGKLDEAEPL--YR 885
                 89*************99..75 PP

>> Osmo_CC  Osmosensory transporter coiled coil
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.0       5.4   5.4e+03      10      26 ..     516     532 ..     513     536 .. 0.86
   2 ?    6.3   0.1     0.012        12      29      44 ..     617     632 ..     616     633 .. 0.93
   3 ?    3.7   0.0     0.073        73      29      44 ..     659     674 ..     651     675 .. 0.92
   4 !    7.4   0.0    0.0053       5.3      29      44 ..     701     716 ..     699     717 .. 0.93
   5 ?    3.2   0.0      0.11   1.1e+02      29      44 ..     743     758 ..     742     759 .. 0.92
   6 ?    5.7   0.0     0.017        17      29      44 ..     785     800 ..     782     801 .. 0.92
   7 !    6.6   0.0    0.0093       9.2      29      43 ..     844     858 ..     820     860 .. 0.93

  Alignments for each domain:
  == domain 1  score: -2.3 bits;  conditional E-value: 5.4
                 XXXXXTHHHHHHHHHHH CS
     Osmo_CC  10 LqehYdnIEqkvedide 26 
                 L +++d I  +v  id 
  KOO23324.1 516 LVNEFDVIAASVARIDS 532
                 8899*********9996 PP

  == domain 2  score: 6.3 bits;  conditional E-value: 0.012
                 HHHHHHHHHHHHH--- CS
     Osmo_CC  29 aaLeekRqrLvdqHPk 44 
                 ++Le++R +L d+HP+
  KOO23324.1 617 EELEAQRATLGDRHPD 632
                 689************7 PP

  == domain 3  score: 3.7 bits;  conditional E-value: 0.073
                 HHHHHHHHHHHHH--- CS
     Osmo_CC  29 aaLeekRqrLvdqHPk 44 
                 +aLe +R +  d+HP+
  KOO23324.1 659 EALETRRATVGDRHPD 674
                 58999**********7 PP

  == domain 4  score: 7.4 bits;  conditional E-value: 0.0053
                 HHHHHHHHHHHHH--- CS
     Osmo_CC  29 aaLeekRqrLvdqHPk 44 
                 +aLe++R +L d+HP+
  KOO23324.1 701 EALEARRATLGDRHPD 716
                 68*************7 PP

  == domain 5  score: 3.2 bits;  conditional E-value: 0.11
                 HHHHHHHHHHHHH--- CS
     Osmo_CC  29 aaLeekRqrLvdqHPk 44 
                 +aLe+ R +L d+HP+
  KOO23324.1 743 EALEAMRATLGDRHPN 758
                 5899***********7 PP

  == domain 6  score: 5.7 bits;  conditional E-value: 0.017
                 HHHHHHHHHHHHH--- CS
     Osmo_CC  29 aaLeekRqrLvdqHPk 44 
                 +aLe +R +L d+HP+
  KOO23324.1 785 EALEVRRATLGDRHPD 800
                 58999**********7 PP

  == domain 7  score: 6.6 bits;  conditional E-value: 0.0093
                 HHHHHHHHHHHHH-- CS
     Osmo_CC  29 aaLeekRqrLvdqHP 43 
                 +aLe+kR +L d+HP
  KOO23324.1 844 EALEAKRATLGDRHP 858
                 689************ PP

>> TPR_17  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.2   0.1     0.066        65      15      33 ..     594     612 ..     592     612 .. 0.89
   2 !    7.0   0.0    0.0084       8.4      15      33 ..     636     654 ..     628     654 .. 0.89
   3 ?    6.6   0.0     0.011        11      15      33 ..     678     696 ..     670     696 .. 0.88
   4 ?    3.9   0.0     0.082        82      15      32 ..     720     737 ..     712     737 .. 0.86
   5 ?    0.8   0.0      0.81   8.1e+02      15      33 ..     762     780 ..     754     780 .. 0.85
   6 ?    5.9   0.0     0.019        19      17      33 ..     806     822 ..     796     822 .. 0.86
   7 ?   -1.5   0.1       4.5   4.4e+03      22      33 ..     828     839 ..     827     839 .. 0.87
   8 ?    3.2   0.1      0.14   1.4e+02      18      33 ..     866     881 ..     863     881 .. 0.93

  Alignments for each domain:
  == domain 1  score: 4.2 bits;  conditional E-value: 0.066
      TPR_17  15 aynnLAelllknGdlmtAr 33 
                 + n+L+ ll+ +G+l++A+
  KOO23324.1 594 LQNQLGMLLHAQGKLDEAE 612
                 5699*************96 PP

  == domain 2  score: 7.0 bits;  conditional E-value: 0.0084
      TPR_17  15 aynnLAelllknGdlmtAr 33 
                 + nnL+ ll+++G+l++A+
  KOO23324.1 636 SINNLGSLLKSQGKLEEAE 654
                 679**************96 PP

  == domain 3  score: 6.6 bits;  conditional E-value: 0.011
      TPR_17  15 aynnLAelllknGdlmtAr 33 
                 a nnL+ ll  +G+l++A+
  KOO23324.1 678 AINNLGALLQDQGKLDEAE 696
                 779**************96 PP

  == domain 4  score: 3.9 bits;  conditional E-value: 0.082
      TPR_17  15 aynnLAelllknGdlmtA 32 
                 + +nL+ ll+++G+l +A
  KOO23324.1 720 SIHNLGSLLHHQGKLNEA 737
                 679***********9887 PP

  == domain 5  score: 0.8 bits;  conditional E-value: 0.81
      TPR_17  15 aynnLAelllknGdlmtAr 33 
                 + n L+ ll+ +G+l++A+
  KOO23324.1 762 SINALGGLLKDQGKLDEAE 780
                 5688999**********96 PP

  == domain 6  score: 5.9 bits;  conditional E-value: 0.019
      TPR_17  17 nnLAelllknGdlmtAr 33 
                  nL+ ll ++G+l++A+
  KOO23324.1 806 SNLGSLLQNQGKLDEAE 822
                 69*************96 PP

  == domain 7  score: -1.5 bits;  conditional E-value: 4.5
      TPR_17  22 lllknGdlmtAr 33 
                 +l+++G+l++A+
  KOO23324.1 828 ALENQGKLDEAE 839
                 799*******96 PP

  == domain 8  score: 3.2 bits;  conditional E-value: 0.14
      TPR_17  18 nLAelllknGdlmtAr 33 
                 nL+ ll+ +G+l++A+
  KOO23324.1 866 NLGALLHAQGKLDEAE 881
                 9*************96 PP

>> TPR_16  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.3       2.4   2.4e+03      17      40 ..     195     213 ..     194     213 .. 0.77
   2 ?    6.1   1.8     0.017        17      15      61 ..     574     619 ..     563     625 .. 0.77
   3 !   12.5   0.2   0.00017      0.17       3      62 ..     598     662 ..     596     670 .. 0.82
   4 !   12.1   2.2   0.00023      0.23       2      63 ..     639     705 ..     638     709 .. 0.83
   5 ?    5.2   2.2     0.033        33       2      28 ..     681     707 ..     680     750 .. 0.67
   6 !    8.9   0.3    0.0023       2.3       2      26 ..     765     789 ..     740     793 .. 0.64
   7 !   15.5   0.2   2.1e-05     0.021       2      62 ..     765     830 ..     764     831 .. 0.86
   8 !    9.3   3.1    0.0017       1.7       6      58 ..     828     885 ..     827     887 .] 0.88

  Alignments for each domain:
  == domain 1  score: -0.7 bits;  conditional E-value: 2.4
      TPR_16  17 aaaleaalkrdpssPdaaeAllll 40 
                 a+a+++al ++     +++Al++l
  KOO23324.1 195 AKAARRALSAG-----DPAALFGL 213
                 57888888888.....77788876 PP

  == domain 2  score: 6.1 bits;  conditional E-value: 0.017
      TPR_16  15 dAaaaleaalkrdpssPdaaeAllllgdaalrqgrlaeAaalyraal 61 
                 +A+ ++ a+ ++ +++ ++ e ++ lg ++ +qg l+eA+ l r++l
  KOO23324.1 574 AAEGRA-ALARMPREERATSELQNQLGMLLHAQGKLDEAEPLWREEL 619
                 555556.7788888888899999999999999999999996666655 PP

  == domain 3  score: 12.5 bits;  conditional E-value: 0.00017
      TPR_16   3 laraalragdyddAaaaleaalkrdp.....ssPdaaeAllllgdaalrqgrlaeAaalyraalr 62 
                 l++++ ++g+ d+A++++++ l++++     ++Pd+  + ++lg ++  qg l+eA+ l+r+al+
  KOO23324.1 598 LGMLLHAQGKLDEAEPLWREELEAQRatlgdRHPDTLGSINNLGSLLKSQGKLEEAEPLLREALE 662
                 6778889999999999998888887523333566699999**********************995 PP

  == domain 4  score: 12.1 bits;  conditional E-value: 0.00023
      TPR_16   2 alaraalragdyddAaaaleaalkrdp.....ssPdaaeAllllgdaalrqgrlaeAaalyraalra 63 
                 +l+ ++  +g+ ++A+++l++al+ ++     ++Pd+ +A ++lg ++  qg l+eA+ l r+al+a
  KOO23324.1 639 NLGSLLKSQGKLEEAEPLLREALETRRatvgdRHPDTLAAINNLGALLQDQGKLDEAEPLKREALEA 705
                 57888899**************99764222226788**********************999998865 PP

  == domain 5  score: 5.2 bits;  conditional E-value: 0.033
      TPR_16   2 alaraalragdyddAaaaleaalkrdp 28 
                 +l+ ++ ++g+ d+A+++ ++al++++
  KOO23324.1 681 NLGALLQDQGKLDEAEPLKREALEARR 707
                 588999************999999884 PP

  == domain 6  score: 8.9 bits;  conditional E-value: 0.0023
      TPR_16   2 alaraalragdyddAaaaleaalkr 26 
                 al+ ++ ++g+ d+A+++ ++al+ 
  KOO23324.1 765 ALGGLLKDQGKLDEAEPLVREALEV 789
                 4555666666666666666666654 PP

  == domain 7  score: 15.5 bits;  conditional E-value: 2.1e-05
      TPR_16   2 alaraalragdyddAaaaleaalkrdp.....ssPdaaeAllllgdaalrqgrlaeAaalyraalr 62 
                 al+ ++ ++g+ d+A+++ ++al+ ++     ++Pd+  +  +lg ++  qg l+eA+ l+r+al+
  KOO23324.1 765 ALGGLLKDQGKLDEAEPLVREALEVRRatlgdRHPDTLTSISNLGSLLQNQGKLDEAEPLVREALE 830
                 78999******************9875222226677***************************997 PP

  == domain 8  score: 9.3 bits;  conditional E-value: 0.0017
      TPR_16   6 aalragdyddAaaaleaalkrdpssPd.....aaeAllllgdaalrqgrlaeAaalyr 58 
                 a+ ++g+ d+A+++ ++al++ + +       + ++  +lg ++ +qg l+eA+ lyr
  KOO23324.1 828 ALENQGKLDEAEPLVREALEAKRATLGdrhpyTLASIGNLGALLHAQGKLDEAEPLYR 885
                 6789***********99999996555589999999999****************9997 PP

>> TPR_19  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.5   1.2     0.052        52      11      45 ..     578     612 ..     573     623 .. 0.88
   2 !   12.6   1.1   0.00015      0.15       4      46 ..     647     697 ..     644     710 .. 0.85
   3 ?    5.6   0.1     0.023        23       9      53 ..     743     788 ..     728     793 .. 0.72
   4 !   10.3   0.1   0.00076      0.76       3      53 ..     772     830 ..     770     832 .. 0.86
   5 !    8.3   0.8    0.0033       3.3       4      45 ..     832     881 ..     829     887 .] 0.84

  Alignments for each domain:
  == domain 1  score: 4.5 bits;  conditional E-value: 0.052
      TPR_19  11 lalleqalqedpknaearllLAeallalgqldeAe 45 
                  a+l+++  e+   +e++ +L  +l a+g ldeAe
  KOO23324.1 578 RAALARMPREERATSELQNQLGMLLHAQGKLDEAE 612
                 567788888889999*******************8 PP

  == domain 2  score: 12.6 bits;  conditional E-value: 0.00015
      TPR_19   4 egdyaeAlalleqalqe........dpknaearllLAeallalgqldeAea 46 
                 +g+++eA +ll++al+          p+ ++a  +L  +l  +g ldeAe 
  KOO23324.1 647 QGKLEEAEPLLREALETrratvgdrHPDTLAAINNLGALLQDQGKLDEAEP 697
                 9**************5555555555************************95 PP

  == domain 3  score: 5.6 bits;  conditional E-value: 0.023
      TPR_19   9 eAlalleqal.qedpknaearllLAeallalgqldeAealLdalpe 53 
                 eAl+++++ l +  p+ +    +L  +l  +g ldeAe l+ +++e
  KOO23324.1 743 EALEAMRATLgDRHPNTLCSINALGGLLKDQGKLDEAEPLVREALE 788
                 4566666653355999999999999999999999999988777665 PP

  == domain 4  score: 10.3 bits;  conditional E-value: 0.00076
      TPR_19   3 aegdyaeAlalleqalqe........dpknaearllLAeallalgqldeAealLdalpe 53 
                 ++g+++eA +l ++al+          p+ +    +L  +l ++g ldeAe l+ +++e
  KOO23324.1 772 DQGKLDEAEPLVREALEVrratlgdrHPDTLTSISNLGSLLQNQGKLDEAEPLVREALE 830
                 79**************6666666666999999999****************98887776 PP

  == domain 5  score: 8.3 bits;  conditional E-value: 0.0033
      TPR_19   4 egdyaeAlalleqalqe........dpknaearllLAeallalgqldeAe 45 
                 +g+++eA +l ++al++         p  ++   +L  +l a+g ldeAe
  KOO23324.1 832 QGKLDEAEPLVREALEAkratlgdrHPYTLASIGNLGALLHAQGKLDEAE 881
                 89*************8866666644666888888***************8 PP

>> TPR_14  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.0       7.5   7.4e+03      18      26 ..     196     204 ..     182     213 .. 0.59
   2 ?    4.8   0.3     0.061        61       2      28 ..     593     619 ..     592     630 .. 0.84
   3 !   11.5   0.3   0.00044      0.44       7      36 ..     640     677 ..     639     685 .. 0.77
   4 ?    1.4   0.4      0.78   7.8e+02       7      29 ..     682     704 ..     677     719 .. 0.83
   5 !    8.7   0.1    0.0034       3.4       6      29 ..     765     788 ..     763     802 .. 0.87
   6 !    8.5   0.0    0.0042       4.2       7      30 ..     808     831 ..     806     834 .. 0.90
   7 !    8.6   0.3    0.0038       3.8       9      30 ..     827     848 ..     827     856 .. 0.91
   8 ?    5.7   0.1     0.033        33       7      27 ..     867     887 .]     866     887 .] 0.90

  Alignments for each domain:
  == domain 1  score: -1.7 bits;  conditional E-value: 7.5
      TPR_14  18 deAiallrr 26 
                 ++A+++l +
  KOO23324.1 196 KAARRALSA 204
                 444444433 PP

  == domain 2  score: 4.8 bits;  conditional E-value: 0.061
      TPR_14   2 eallalaeallalGdpdeAiallrral 28 
                 e++ +l+ +l a+G++deA+ l r+ l
  KOO23324.1 593 ELQNQLGMLLHAQGKLDEAEPLWREEL 619
                 56779999************9988755 PP

  == domain 3  score: 11.5 bits;  conditional E-value: 0.00044
      TPR_14   7 laeallalGdpdeAiallrrala........laPddae 36 
                 l+++l  +G+++eA+ llr+al+        ++Pd ++
  KOO23324.1 640 LGSLLKSQGKLEEAEPLLREALEtrratvgdRHPDTLA 677
                 78999******************666555555566555 PP

  == domain 4  score: 1.4 bits;  conditional E-value: 0.78
      TPR_14   7 laeallalGdpdeAiallrrala 29 
                 l+++l  +G++deA+ l r+al+
  KOO23324.1 682 LGALLQDQGKLDEAEPLKREALE 704
                 7888999*******998888877 PP

  == domain 5  score: 8.7 bits;  conditional E-value: 0.0034
      TPR_14   6 alaeallalGdpdeAiallrrala 29 
                 al+ +l  +G++deA+ l r+al+
  KOO23324.1 765 ALGGLLKDQGKLDEAEPLVREALE 788
                 68999*****************98 PP

  == domain 6  score: 8.5 bits;  conditional E-value: 0.0042
      TPR_14   7 laeallalGdpdeAiallrralal 30 
                 l+++l ++G++deA+ l r+al+ 
  KOO23324.1 808 LGSLLQNQGKLDEAEPLVREALEN 831
                 789999***************985 PP

  == domain 7  score: 8.6 bits;  conditional E-value: 0.0038
      TPR_14   9 eallalGdpdeAiallrralal 30 
                 eal+++G++deA+ l r+al++
  KOO23324.1 827 EALENQGKLDEAEPLVREALEA 848
                 589****************985 PP

  == domain 8  score: 5.7 bits;  conditional E-value: 0.033
      TPR_14   7 laeallalGdpdeAiallrra 27 
                 l+++l a+G++deA+ l+r a
  KOO23324.1 867 LGALLHAQGKLDEAEPLYRNA 887
                 688999************976 PP

>> TPR_5  Tetratrico peptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.7   1.3   0.00047      0.46      14      93 ..     605     695 ..     597     705 .. 0.72
   2 ?    6.3   1.4     0.011        11      13      95 ..     688     781 ..     676     788 .. 0.71
   3 !   10.1   0.8   0.00075      0.74      12      69 ..     771     833 ..     762     852 .. 0.73
   4 ?    0.4   0.0      0.75   7.5e+02      13      27 ..     873     887 .]     864     887 .] 0.86

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00047
       TPR_5  14 tGhedkavplYrraLaeGLagarrrr.....atiqLassLRnlGeaeealaLLraeleap....sdelddalaaflaL..vLsdlgrerea 93 
                  G+ d+a+pl+r+ L++  a    r+         L s L+  G++eea+ LLr+ le++    +d   d laa+  L   L d+g+  ea
  KOO23324.1 605 QGKLDEAEPLWREELEAQRATLGDRHpdtlgSINNLGSLLKSQGKLEEAEPLLREALETRratvGDRHPDTLAAINNLgaLLQDQGKLDEA 695
                 6999********99997655444443111213457*******************9887641222577778888877664458888887777 PP

  == domain 2  score: 6.3 bits;  conditional E-value: 0.011
       TPR_5  13 stGhedkavplYrraLaeGLagarrrr....ati.qLassLRnlGeaeealaLLraelea....psdelddalaaflaL..vLsdlgrereavs 95 
                   G+ d+a+pl r+aL++  a    r+    a i  L s L   G+++ea  L r+ lea     +d   + l+++ aL   L d+g+  ea  
  KOO23324.1 688 DQGKLDEAEPLKREALEARRATLGDRHpdtlASIhNLGSLLHHQGKLNEAGPLRREALEAmratLGDRHPNTLCSINALggLLKDQGKLDEAEP 781
                 46999***********9855444333322225553699999********999877766662111466777799999999666999999888855 PP

  == domain 3  score: 10.1 bits;  conditional E-value: 0.00075
       TPR_5  12 DstGhedkavplYrraLa...eGLagarrrr..atiqLassLRnlGeaeealaLLraeleaps 69 
                    G+ d+a+pl r+aL+   + L + +         L s L n G+++ea+ L+r+ le+++
  KOO23324.1 771 KDQGKLDEAEPLVREALEvrrATLGDRHPDTltSISNLGSLLQNQGKLDEAEPLVREALENQG 833
                 567999***********84334455544444114458*******************9988754 PP

  == domain 4  score: 0.4 bits;  conditional E-value: 0.75
       TPR_5  13 stGhedkavplYrra 27 
                   G+ d+a+plYr+a
  KOO23324.1 873 AQGKLDEAEPLYRNA 887
                 57999********97 PP

>> RPN6_N  26S proteasome regulatory subunit RPN6 N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.2   0.0     0.013        13       6      54 ..     646     695 ..     641     704 .. 0.87
   2 ?   -1.6   0.0       3.5   3.5e+03      12      64 ..     695     747 ..     691     751 .. 0.69
   3 ?    3.2   0.0      0.11   1.1e+02       8      60 ..     775     827 ..     768     832 .. 0.85
   4 ?   -1.0   0.0       2.2   2.2e+03       4      54 ..     829     880 ..     826     886 .. 0.82

  Alignments for each domain:
  == domain 1  score: 6.2 bits;  conditional E-value: 0.013
      RPN6_N   6 ks.dpkeaeelykeilskkskedeealreqeqalleLgelyrdqkkaeeL 54 
                 ++ + +eae l++e l+++ ++  ++  +  +a+ +Lg l++dq+k +e 
  KOO23324.1 646 SQgKLEEAEPLLREALETRRATVGDRHPDTLAAINNLGALLQDQGKLDEA 695
                 455889**************99999*******************998876 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 3.5
      RPN6_N  12 aeelykeilskkskedeealreqeqalleLgelyrdqkkaeeLaelikesrsf 64 
                 ae l +e l+ + ++  ++  +  +++ +Lg+l+++q+k +e   l +e  + 
  KOO23324.1 695 AEPLKREALEARRATLGDRHPDTLASIHNLGSLLHHQGKLNEAGPLRREALEA 747
                 5555555566666555566667778999*******999988877666665555 PP

  == domain 3  score: 3.2 bits;  conditional E-value: 0.11
      RPN6_N   8 dpkeaeelykeilskkskedeealreqeqalleLgelyrdqkkaeeLaelike 60 
                 + +eae l +e l+ + ++  ++  +  +++ +Lg+l+++q+k +e   l++e
  KOO23324.1 775 KLDEAEPLVREALEVRRATLGDRHPDTLTSISNLGSLLQNQGKLDEAEPLVRE 827
                 7788999999999999988888999999****************999999876 PP

  == domain 4  score: -1.0 bits;  conditional E-value: 2.2
      RPN6_N   4 laks.dpkeaeelykeilskkskedeealreqeqalleLgelyrdqkkaeeL 54 
                 l+++ + +eae l +e l+ k ++  ++     +++ +Lg l+++q+k +e 
  KOO23324.1 829 LENQgKLDEAEPLVREALEAKRATLGDRHPYTLASIGNLGALLHAQGKLDEA 880
                 5556688999999999999999888888899999999****99999988775 PP

>> BRCC36_C  BRCC36 C-terminal helical domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.0       7.6   7.6e+03      49      71 ..     350     372 ..     347     375 .. 0.81
   2 ?    6.7   0.0     0.008         8      12      57 ..     614     657 ..     611     672 .. 0.86
   3 ?    0.7   0.0      0.58   5.8e+02      12      42 ..     698     728 ..     695     746 .. 0.80
   4 ?   -1.7   0.0       3.4   3.4e+03      12      57 ..     782     825 ..     780     839 .. 0.74

  Alignments for each domain:
  == domain 1  score: -2.8 bits;  conditional E-value: 7.6
    BRCC36_C  49 seviavPllqtLesrlkenknrl 71 
                  e +++Pl +t  + l+   +rl
  KOO23324.1 350 CERVCKPLTETAGDSLAACLVRL 372
                 6899*****99999888777776 PP

  == domain 2  score: 6.7 bits;  conditional E-value: 0.008
    BRCC36_C  12 LfqEEreayekalrsqendllskihnsavytkslcalseviavPll 57 
                 L+ EE ea +++l + + d l +i n     ks+++l e+   Pll
  KOO23324.1 614 LWREELEAQRATLGDRHPDTLGSINNLGSLLKSQGKLEEA--EPLL 657
                 99************999*******************9884..5666 PP

  == domain 3  score: 0.7 bits;  conditional E-value: 0.58
    BRCC36_C  12 LfqEEreayekalrsqendllskihnsavyt 42 
                 L  E  ea +++l + + d l++ihn     
  KOO23324.1 698 LKREALEARRATLGDRHPDTLASIHNLGSLL 728
                 667888899999999999*******966555 PP

  == domain 4  score: -1.7 bits;  conditional E-value: 3.4
    BRCC36_C  12 LfqEEreayekalrsqendllskihnsavytkslcalseviavPll 57 
                 L+ E  e  +++l + + d l++i n     +++++l e  a Pl+
  KOO23324.1 782 LVREALEVRRATLGDRHPDTLTSISNLGSLLQNQGKLDE--AEPLV 825
                 566777777888888888999999999888888888866..45665 PP

>> TPR_11  TPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.8   0.0       0.4     4e+02       3      13 ..     601     611 ..     599     611 .. 0.87
   2 ?    3.3   0.0     0.066        66       1      22 [.     641     662 ..     641     667 .. 0.84
   3 ?    0.2   0.0      0.64   6.4e+02      30      42 .]     678     690 ..     672     695 .. 0.67
   4 ?   -0.9   0.0       1.4   1.4e+03       1      13 [.     725     737 ..     725     737 .. 0.89
   5 ?   -0.7   0.1       1.2   1.2e+03       4      13 ..     770     779 ..     767     779 .. 0.85
   6 ?   -2.3   0.0       3.6   3.6e+03       7      13 ..     815     821 ..     806     821 .. 0.53
   7 ?    2.6   0.1      0.11   1.1e+02       2      20 ..     869     887 .]     868     887 .] 0.79

  Alignments for each domain:
  == domain 1  score: 0.8 bits;  conditional E-value: 0.4
      TPR_11   3 ayyeqGkyeeA 13 
                 ++++qGk++eA
  KOO23324.1 601 LLHAQGKLDEA 611
                 689*******9 PP

  == domain 2  score: 3.3 bits;  conditional E-value: 0.066
      TPR_11   1 GdayyeqGkyeeAieaYkkAlk 22 
                 G ++ +qGk+eeA   +++Al+
  KOO23324.1 641 GSLLKSQGKLEEAEPLLREALE 662
                 67889********888888876 PP

  == domain 3  score: 0.2 bits;  conditional E-value: 0.64
      TPR_11  30 ayynLGlayykqG 42 
                 a +nLG++++ qG
  KOO23324.1 678 AINNLGALLQDQG 690
                 5567777777776 PP

  == domain 4  score: -0.9 bits;  conditional E-value: 1.4
      TPR_11   1 GdayyeqGkyeeA 13 
                 G +++ qGk++eA
  KOO23324.1 725 GSLLHHQGKLNEA 737
                 778999******9 PP

  == domain 5  score: -0.7 bits;  conditional E-value: 1.2
      TPR_11   4 yyeqGkyeeA 13 
                 + +qGk++eA
  KOO23324.1 770 LKDQGKLDEA 779
                 679******9 PP

  == domain 6  score: -2.3 bits;  conditional E-value: 3.6
      TPR_11   7 qGkyeeA 13 
                 qGk++eA
  KOO23324.1 815 QGKLDEA 821
                 5666665 PP

  == domain 7  score: 2.6 bits;  conditional E-value: 0.11
      TPR_11   2 dayyeqGkyeeAieaYkkA 20 
                  ++++qGk++eA   Y++A
  KOO23324.1 869 ALLHAQGKLDEAEPLYRNA 887
                 5789********7666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (887 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       362  (0.0201908); expected 358.6 (0.02)
Passed bias filter:                      293  (0.0163422); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                        19  (0.00105974); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              18  [number of targets reported over threshold]
# CPU time: 0.74u 0.27s 00:00:01.01 Elapsed: 00:00:00.52
# Mc/sec: 5095.97
//
Query:       KOO23325.1  [L=871]
Description: transient receptor potential cation channel subfamily v member 5 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.5e-07   30.9   4.6    3.4e-07   29.7   4.6    1.7  1  Ion_trans  Ion transport protein
  ------ inclusion threshold ------
      0.033   14.7   0.0         24    5.9   0.0    3.8  3  Ank_3      Ankyrin repeat


Domain annotation for each model (and alignments):
>> Ion_trans  Ion transport protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.7   4.6   3.8e-11   3.4e-07     110     242 ..     585     725 ..     522     728 .. 0.80

  Alignments for each domain:
  == domain 1  score: 29.7 bits;  conditional E-value: 3.8e-11
                 HCHSHHHHHHHH.HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCCCCSCCSTSSSTTTSSSSSSHHHHHHHHHH.HHTTSSHHHHHHHHHHHS CS
   Ion_trans 110 isrleglrtlvt.alirsvkdllnvlllllvvlfifaligvqlfkgklreknecaktwenpnngntnFdnfftallwlfr.lmttegwgdilyatldek 206
                 +s le+l +l t ++++  kd+ n l+l++++++ ++++++  +  ++       ++     ++ +nF++f+ a+++l++  + +e     ++  + + 
  KOO23325.1 585 LSPLERLGVLYTvCFKMLGKDVSNWLVLFAIFILNYGVVMYVCYPPNFS------DSMLATADPVPNFEKFWPAFWSLIEaGLIGE----RIALDIAAW 673
                 4566777777776899999*************************77777......34445557799**************423333....333333332 PP

                 ...............HHHHHHH.HHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
   Ion_trans 207 ...............skvaliy.fvifiilgsflllNlliaviadnfqelte 242
                                 ++a+++ +++++i++ +lllNllia++ ++++++ +
  KOO23325.1 674 ngfdtssakavwknlAFLAFLLsVIMYYIMALVLLLNLLIAMMGETYANTMR 725
                 35555788899988966666551567778888899************99866 PP

>> Ank_3  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.8   0.0     0.028   2.5e+02       1      21 [.     158     179 ..     158     184 .. 0.80
   2 ?    5.9   0.0    0.0027        24       2      26 ..     259     283 ..     258     287 .. 0.86
   3 ?    0.5   0.0      0.16   1.5e+03       4      23 ..     311     330 ..     310     335 .. 0.88

  Alignments for each domain:
  == domain 1  score: 2.8 bits;  conditional E-value: 0.028
       Ank_3   1 nGetpLhlAarsgnle.ivkfL 21 
                 +Ge++Lh+ a + + + +++ +
  KOO23325.1 158 EGENALHILAVNKREDeLCRVI 179
                 599****999999886577665 PP

  == domain 2  score: 5.9 bits;  conditional E-value: 0.0027
       Ank_3   2 GetpLhlAarsgnleivkfLlenkg 26 
                 G  pLh+A+ +  + +  fL++ +g
  KOO23325.1 259 GFLPLHVAVANSLTGMFNFLIDLPG 283
                 678******************9655 PP

  == domain 3  score: 0.5 bits;  conditional E-value: 0.16
       Ank_3   4 tpLhlAarsgnleivkfLle 23 
                 tpL l ++ g+  iv+++l+
  KOO23325.1 311 TPLGLGVKLGDKRIVQYILR 330
                 89999999***********9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (871 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       506  (0.0282224); expected 358.6 (0.02)
Passed bias filter:                      283  (0.0157845); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.65u 0.26s 00:00:00.91 Elapsed: 00:00:00.44
# Mc/sec: 5968.30
//
Query:       KOO23326.1  [L=225]
Description: hypothetical protein Ctob_000212 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (225 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       363  (0.0202465); expected 358.6 (0.02)
Passed bias filter:                      280  (0.0156172); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.41u 0.25s 00:00:00.65 Elapsed: 00:00:00.41
# Mc/sec: 1635.83
//
Query:       KOO23327.1  [L=484]
Description: sulfotransferase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.5e-09   37.0   0.1       0.25   11.7   0.0    3.5  3  Sulfotransfer_3  Sulfotransferase family
    3.4e-05   23.5   0.0      0.057   12.9   0.0    2.2  2  Sulfotransfer_1  Sulfotransferase domain


Domain annotation for each model (and alignments):
>> Sulfotransfer_3  Sulfotransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.5   0.0   3.2e-05      0.28       1      40 [.     178     215 ..     178     246 .. 0.73
   2 !   10.1   0.0   8.8e-05      0.79     118     145 ..     260     287 ..     219     298 .. 0.72
   3 !   11.7   0.0   2.8e-05      0.25     171     214 ..     428     473 ..     405     476 .. 0.82

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 3.2e-05
                      -.EEEE--TTSSHHHHHHHHHTSTTEE--S--.--TT.-SB CS
  Sulfotransfer_3   1 P.ifivGlpRSGTTlLhrlLaahpdvripeetlfvaprlla 40 
                      P +  +G  R GTT L + L +hpdv++p       pr+l 
       KOO23327.1 178 PaVYLLGEMRCGTTSLYARLLSHPDVEAPLNK---EPRYLT 215
                      668899*******************8877555...444443 PP

  == domain 2  score: 10.1 bits;  conditional E-value: 8.8e-05
                      HHHHHBSSEEEEEEE--H.HHHHHHHHH CS
  Sulfotransfer_3 118 lllelfPdAkfihlvRdpvdtvlssyvs 145
                       +++  P+Ak ++l+Rdp+++++s +++
       KOO23327.1 260 WVKKWVPEAKHLVLLRDPIQRTYSHWRA 287
                      456889****************999875 PP

  == domain 3  score: 11.7 bits;  conditional E-value: 2.8e-05
                      HH.HH.HHHHHHHHS-TTSEEEEEHHHHHH-HHHHHHHHHHHHT-- CS
  Sulfotransfer_3 171 ra.ye.rllaararlppdrfldvrYedLvadpegtlrriyeflglp 214
                       + y  +l a++a +p +++  +  e+L +d  ++++ +++flgl+
       KOO23327.1 428 SSrYAsNLAAWYAAFPRSQIKVLATEELERDATAVMKDVISFLGLR 473
                      43254045555666******************************96 PP

>> Sulfotransfer_1  Sulfotransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.4   0.0   0.00015       1.3       4     125 ..     180     288 ..     177     317 .. 0.69
   2 !   12.9   0.0   6.4e-06     0.057     153     197 ..     429     473 ..     399     479 .. 0.90

  Alignments for each domain:
  == domain 1  score: 8.4 bits;  conditional E-value: 0.00015
                      EEEEESTTSSHHHHHHHHHHHHTTTCC.HHHTSSGHCT-..HHHSCBTTHECCTSG.CCGTTECCCHHHTTTEEHHHHHHHSTSS.EEE.E... CS
  Sulfotransfer_1   4 vlivtypKSGTtwlqellslitsegdf.ekaeepalfna..rdrspfLelydlyfp.nslkppdhlrsyshvaekvvrlralesprllk.tHlp 92 
                      v +++  ++GTt l++ l  +++++++ +  +ep +++   + ++ +  +  ++ p ++              ++++++   +sp ++  +   
       KOO23327.1 180 VYLLGEMRCGTTSLYARLLSHPDVEAPlN--KEPRYLTLpnYRYHTGSSYAANFAPvAR--------------QDARAITLDASPTVFNaP--L 255
                      56777789999999999999999999942..3333322223555555555444444333..............334445555566666643..3 PP

                      GGGS.CHHHHTT-EEEEEE--HHHHHHHHHHHH CS
  Sulfotransfer_1  93 lkllpkslldsnlKiiylvRnpkdvavSryhfs 125
                      l+ l  + + + +K ++l+R+p  + +S + + 
       KOO23327.1 256 LAPLWVKKWVPEAKHLVLLRDPIQRTYSHWRAG 288
                      4456666799******************99875 PP

  == domain 2  score: 12.9 bits;  conditional E-value: 6.4e-06
                      C-HHHHHHHHHHHTTTTTEEEEEHHHHHHHHHHHHHHHHHHTT-- CS
  Sulfotransfer_1 153 gsyfdhvkswlklrkkgnvlflrYEdlkkdpakeikkiaeFlGip 197
                      + y++ +  w+ ++++ ++ +l  E+l +d   ++k +++FlG+ 
       KOO23327.1 429 SRYASNLAAWYAAFPRSQIKVLATEELERDATAVMKDVISFLGLR 473
                      56899999***********************************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (484 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       470  (0.0262145); expected 358.6 (0.02)
Passed bias filter:                      321  (0.017904); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.52u 0.27s 00:00:00.79 Elapsed: 00:00:00.43
# Mc/sec: 3367.06
//
Query:       KOO23328.1  [L=516]
Description: sulfotransferase, partial [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    5.9e-09   36.6   0.1       0.27   11.6   0.0    3.5  3  Sulfotransfer_3  Sulfotransferase family
    3.8e-05   23.3   0.0      0.056   12.9   0.0    2.2  2  Sulfotransfer_1  Sulfotransferase domain


Domain annotation for each model (and alignments):
>> Sulfotransfer_3  Sulfotransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.4   0.0   3.4e-05      0.31       1      40 [.     178     215 ..     178     246 .. 0.73
   2 !    9.9   0.0   9.7e-05      0.87     118     145 ..     260     287 ..     219     298 .. 0.72
   3 !   11.6   0.0   3.1e-05      0.27     171     214 ..     428     473 ..     406     476 .. 0.82

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 3.4e-05
                      -.EEEE--TTSSHHHHHHHHHTSTTEE--S--.--TT.-SB CS
  Sulfotransfer_3   1 P.ifivGlpRSGTTlLhrlLaahpdvripeetlfvaprlla 40 
                      P +  +G  R GTT L + L +hpdv++p       pr+l 
       KOO23328.1 178 PaVYLLGEMRCGTTSLYARLLSHPDVEAPLNK---EPRYLT 215
                      668899*******************8877555...444443 PP

  == domain 2  score: 9.9 bits;  conditional E-value: 9.7e-05
                      HHHHHBSSEEEEEEE--H.HHHHHHHHH CS
  Sulfotransfer_3 118 lllelfPdAkfihlvRdpvdtvlssyvs 145
                       +++  P+Ak ++l+Rdp+++++s +++
       KOO23328.1 260 WVKKWVPEAKHLVLLRDPIQRTYSHWRA 287
                      456889****************999875 PP

  == domain 3  score: 11.6 bits;  conditional E-value: 3.1e-05
                      HH.HH.HHHHHHHHS-TTSEEEEEHHHHHH-HHHHHHHHHHHHT-- CS
  Sulfotransfer_3 171 ra.ye.rllaararlppdrfldvrYedLvadpegtlrriyeflglp 214
                       + y  +l a++a +p +++  +  e+L +d  ++++ +++flgl+
       KOO23328.1 428 SSrYAsNLAAWYAAFPRSQIKVLATEELERDATAVMKDVISFLGLR 473
                      43254045555666******************************96 PP

>> Sulfotransfer_1  Sulfotransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.2   0.0   0.00017       1.5       4     125 ..     180     288 ..     177     317 .. 0.69
   2 !   12.9   0.0   6.3e-06     0.056     153     197 ..     429     473 ..     399     484 .. 0.90

  Alignments for each domain:
  == domain 1  score: 8.2 bits;  conditional E-value: 0.00017
                      EEEEESTTSSHHHHHHHHHHHHTTTCC.HHHTSSGHCT-..HHHSCBTTHECCTSG.CCGTTECCCHHHTTTEEHHHHHHHSTSS.EEE.E... CS
  Sulfotransfer_1   4 vlivtypKSGTtwlqellslitsegdf.ekaeepalfna..rdrspfLelydlyfp.nslkppdhlrsyshvaekvvrlralesprllk.tHlp 92 
                      v +++  ++GTt l++ l  +++++++ +  +ep +++   + ++ +  +  ++ p ++              ++++++   +sp ++  +   
       KOO23328.1 180 VYLLGEMRCGTTSLYARLLSHPDVEAPlN--KEPRYLTLpnYRYHTGSSYAANFAPvAR--------------QDARAITLDASPTVFNaP--L 255
                      56777789999999999999999999942..3333322223555555555444444333..............334445555566666643..3 PP

                      GGGS.CHHHHTT-EEEEEE--HHHHHHHHHHHH CS
  Sulfotransfer_1  93 lkllpkslldsnlKiiylvRnpkdvavSryhfs 125
                      l+ l  + + + +K ++l+R+p  + +S + + 
       KOO23328.1 256 LAPLWVKKWVPEAKHLVLLRDPIQRTYSHWRAG 288
                      4456666799******************99875 PP

  == domain 2  score: 12.9 bits;  conditional E-value: 6.3e-06
                      C-HHHHHHHHHHHTTTTTEEEEEHHHHHHHHHHHHHHHHHHTT-- CS
  Sulfotransfer_1 153 gsyfdhvkswlklrkkgnvlflrYEdlkkdpakeikkiaeFlGip 197
                      + y++ +  w+ ++++ ++ +l  E+l +d   ++k +++FlG+ 
       KOO23328.1 429 SRYASNLAAWYAAFPRSQIKVLATEELERDATAVMKDVISFLGLR 473
                      56899999***********************************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (516 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       524  (0.0292264); expected 358.6 (0.02)
Passed bias filter:                      353  (0.0196888); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.51u 0.28s 00:00:00.79 Elapsed: 00:00:00.43
# Mc/sec: 3588.99
//
Query:       KOO23329.1  [L=157]
Description: hypothetical protein Ctob_000210 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.5e-05   24.2   2.3    2.6e-05   23.4   2.3    1.4  1  zf-RanBP       Zn-finger in Ran binding protein and others
    0.00027   20.9   0.6    0.00048   20.1   0.6    1.4  1  DZR            Double zinc ribbon
  ------ inclusion threshold ------
      0.024   14.3   2.5      0.048   13.4   2.5    1.5  1  zinc_ribbon_2  zinc-ribbon domain


Domain annotation for each model (and alignments):
>> zf-RanBP  Zn-finger in Ran binding protein and others
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.4   2.3   4.4e-09   2.6e-05       5      29 ..      32      56 ..      31      57 .. 0.92

  Alignments for each domain:
  == domain 1  score: 23.4 bits;  conditional E-value: 4.4e-09
                EE-SSS--EEESSSSB-TTT--BTS CS
    zf-RanBP  5 WdCskClvqNfawstkCvaCqapkp 29
                W+C++C++ N+  + +C aC+  +p
  KOO23329.1 32 WTCPTCTLENSDGARVCDACGKTRP 56
                ********************96666 PP

>> DZR  Double zinc ribbon
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.1   0.6     8e-08   0.00048       1      22 [.      34      55 ..      34      80 .. 0.85

  Alignments for each domain:
  == domain 1  score: 20.1 bits;  conditional E-value: 8e-08
         DZR  1 CpqCgeelppdarfCseCgtkl 22
                Cp+C  e++++ar+C++Cg++ 
  KOO23329.1 34 CPTCTLENSDGARVCDACGKTR 55
                *******************873 PP

>> zinc_ribbon_2  zinc-ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   2.5   8.1e-06     0.048       2      21 ..      34      53 ..      33      54 .. 0.95

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 8.1e-06
  zinc_ribbon_2  2 CpnCGaelqdnakFCpyCGt 21
                   Cp C  e++d+a+ C  CG 
     KOO23329.1 34 CPTCTLENSDGARVCDACGK 53
                   *******************5 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (157 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       667  (0.0372023); expected 358.6 (0.02)
Passed bias filter:                      420  (0.0234257); expected 358.6 (0.02)
Passed Vit filter:                        52  (0.00290033); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.39u 0.23s 00:00:00.62 Elapsed: 00:00:00.38
# Mc/sec: 1227.15
//
Query:       KOO23330.1  [L=84]
Description: hypothetical protein Ctob_000217 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (84 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       912  (0.0508673); expected 358.6 (0.02)
Passed bias filter:                      343  (0.019131); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.24s 00:00:00.58 Elapsed: 00:00:00.37
# Mc/sec: 675.25
//
Query:       KOO23331.1  [L=256]
Description: hypothetical protein Ctob_000216 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (256 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       348  (0.0194099); expected 358.6 (0.02)
Passed bias filter:                      307  (0.0171231); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.40u 0.22s 00:00:00.62 Elapsed: 00:00:00.37
# Mc/sec: 2048.58
//
Query:       KOO23332.1  [L=460]
Description: pseudouridylate synthase 7-like protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.6e-67  226.6   0.0    2.1e-64  217.9   0.0    2.1  1  TruD      tRNA pseudouridine synthase D (TruD)


Domain annotation for each model (and alignments):
>> TruD  tRNA pseudouridine synthase D (TruD)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  217.9   0.0   1.2e-68   2.1e-64       2     416 .]      22     445 ..      21     445 .. 0.81

  Alignments for each domain:
  == domain 1  score: 217.9 bits;  conditional E-value: 1.2e-68
        TruD   2 lgielyvtdt.egigGrlrespeDFiVeEieefsge.e.eade...................geylvlrvekrnwdtldlvrelaralgisrkrvgfaG 78 
                 +gi  yv+++ +g+gG ++++p DF V+Ei+ + +e   +  e                   ++++ ++++k+ +dt  ++ e+ar+l++  + +gfaG
  KOO23332.1  22 VGICEYVSQAlPGLGGVVKARPSDFQVNEISIAGNEvIiS--EaaidegradeqsestddapDQFTRFTLRKERMDTFGAIAEMARQLEVPARSFGFAG 118
                 788888887449******************8874442221..12344566777888999988999********************************** PP

        TruD  79 tKDkrAvTtQlisirkvepeelealeikdvelevvgrarrklrlGdLaGNkFeirvrdvaeeeeaakraeeileeleekggvPNyfGvQRFGsrrpvth 177
                 +KD rAvTtQ +++r+v p++++ l  +++++++  +  r+lrlG+L GN+F+i++r ++    +a+++e+ l++l+++g + NyfG+QRFG++   + 
  KOO23332.1 119 LKDFRAVTTQEMTVRGVPPAAVRVLVHSHLQVSSCRKVARSLRLGQLSGNRFRIVLRSCH---GTAAEVEAALSALARRG-FVNYFGMQRFGETAARND 213
                 **********************999999******************************73...45689*********998.****************** PP

        TruD 178 lvGkaivkgdleeAvelyvgkpfeees..edtreareavaetgdleealeelpkslryErallkrLae.........kpkdykkAlealpknLqrlFvh 265
                 +vGk+++ g++ +Av++++    ++ +      earea ++++d+++ l+++p+  ++Er++l++La+          ++  + A+ +lp nL+rl  h
  KOO23332.1 214 EVGKHLLLGQYAAAVDALLKPRPDDARtgGAEAEAREAWERSNDVRTVLKLMPRVRSVEREVLSALARtlgetqtlsYEERCRLAVLSLPLNLRRLLAH 312
                 ******************98655444311567789**************************************999889999***************** PP

        TruD 266 AyqSylFNrvlseRlerglpldepveGDvvifaeer.........lpdtdrlqlvteknveevkrliergrafvtaplvGtetelaegevgeierevle 355
                 Ay S l+N + seRl++   l++++eG++v+ + +r          + +d++++vt++++++ +  ++     v++pl+G   e+++  v++  +  l+
  KOO23332.1 313 AYFSRLWNLAASERLRQH-GLRRALEGEFVLPRGKRfarlmrrgsGARRDAVHVVTAEEAAAGTYSVR----RVVLPLPGRLIEMPRTAVKDAVS--LN 404
                 ****************88.8*************88865555544334444444444444444433333....25556666655554443333221..22 PP

        TruD 356 eegleledFklpklpelsskGtrRaillrvedlelsaeedeltleFsLpkGsYATvvlrEi 416
                 e     ++              +++++l ++  +     +++ l+F Lp+G YAT+ lrE+
  KOO23332.1 405 E----ISE--------------FKNLSLVTAGSA--LGAHDVFLQFDLPPGAYATIALREV 445
                 2....233..............445555555433..333569*****************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (460 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       353  (0.0196888); expected 358.6 (0.02)
Passed bias filter:                      297  (0.0165653); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.21s 00:00:00.70 Elapsed: 00:00:00.38
# Mc/sec: 3640.93
//
Query:       KOO23333.1  [L=758]
Description: dead deah box RNA, partial [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    7.8e-40  136.5   0.0    4.2e-39  134.1   0.0    2.1  1  DEAD        DEAD/DEAH box helicase
    6.2e-25   87.7   0.0    1.2e-24   86.8   0.0    1.5  1  Helicase_C  Helicase conserved C-terminal domain
    7.4e-09   35.7   7.8    2.3e-08   34.2   7.8    1.8  1  DBP10CT     DBP10CT (NUC160) domain
    8.5e-05   22.6   0.0    0.00016   21.7   0.0    1.5  1  ResIII      Type III restriction enzyme, res subunit


Domain annotation for each model (and alignments):
>> DEAD  DEAD/DEAH box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  134.1   0.0   9.3e-43   4.2e-39       1     170 [.      20     171 ..      20     177 .. 0.94

  Alignments for each domain:
  == domain 1  score: 134.1 bits;  conditional E-value: 9.3e-43
                 -HHHHHHHHHHHTTCEEEEEESTTSSHHHHHHHHHHHHHHHSTTSTS-EEEEEESSHHHHHHHHHHHHHHTTTSTSEEEEEETTSSHHHHHHHHHTTCS CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD   1 tdiQaeaiplilgggdvlvaaeTGsGKTlaflipvlqivyetkgktgpkalivePtreLaeqtlnnlkkfkkyidlrvlliiggvaardqlskldngvd 99 
                 t+iQ++aip il g+dv++ a+TGsGKT+aflip+++++  + +  g + l+++PtreLa q   ++            l++gg+a ++q ++l +++d
  KOO23333.1  20 TPIQRKAIPPILAGRDVVAMARTGSGKTAAFLIPLIEKLGAHASVVGVRGLVLSPTRELAMQPPMRF-----------ALVVGGDAIEEQFETLARNPD 107
                 89*************************************9989*****************9976655...........57799***********999** PP

                 EEEEEHHHHHHHHHCTSSHCTTEEEEEEETHHHHHHTTTHHHHHHHHHHSHHHCTTSTTTSEEEEEESSBS CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD 100 ivvgtpgrlddllstgklnlsqvrflVlDEadrlldqgfsdfinrilnqlpqitcdgklqrqvivlSATlp 170
                 ++vgtpgrl+++l + +l+l++v+++V DEadrl ++gf  ++++il+++       + +rq++++SAT+p
  KOO23333.1 108 VLVGTPGRLQHVLVDAQLSLQRVEYVVCDEADRLFEMGFAAQLDAILQSV-------PPTRQTLLFSATMP 171
                 ***********998999*********************************.......56789********8 PP

>> Helicase_C  Helicase conserved C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   86.8   0.0   2.7e-28   1.2e-24       2     111 .]     212     322 ..     211     322 .. 0.91

  Alignments for each domain:
  == domain 1  score: 86.8 bits;  conditional E-value: 2.7e-28
                 HHHHHHHHH.HHTTTTSEEEEEESSHHHHHH.HHHHHHHTTSTEEEESTTSTHHHHHHHHHHHHTTSSSEEEESGGGTSSSTSTTESEEEESSSSSSHH CS
  Helicase_C   2 kleallell.kleeeggkilifvntidrlek.vklllekkgikvavlhgelpqnereeileqfnkgesdvLiatdvaerGidipkvnlVinfdlprnvt 98 
                 kl all ll ++  +++++++f+ t+ ++e+  +ll  + g+ +a+++g+l    r+ +l +f++g+ +vLi tdva+rGid+p +++V+nfd+p++++
  KOO23333.1 212 KLGALLVLLgQTLPRDQQTIVFASTRHHVEMlYELL-LTAGYACAAIYGSLDPAARKIALGKFRAGKAKVLIVTDVAARGIDVPLLDNVVNFDFPTKPK 309
                 56667777777778999**********998855555.5779********************************************************** PP

                 HHHHHHTTSSSTT CS
  Helicase_C  99 syiqriGRtgRag 111
                  +++r+GR+gRag
  KOO23333.1 310 LFVHRAGRAGRAG 322
                 ***********97 PP

>> DBP10CT  DBP10CT (NUC160) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.2   7.8   5.1e-12   2.3e-08       1      65 []     645     715 ..     645     715 .. 0.79

  Alignments for each domain:
  == domain 1  score: 34.2 bits;  conditional E-value: 5.1e-12
     DBP10CT   1 DLtgDeaeelkkkkqakklrWDkKkkkyVkrtnkdedgsk...........kirtESGvkiaasfksgrYdkWkkk 65 
                 DL++De + lkk++++ k  WD+Kk+kyV++   +++g              +r ESG+ +++  k ++Y++Wkkk
  KOO23333.1 645 DLVEDERDGLKKRRSVLK--WDQKKRKYVREVL-GQTGVGaavgvadrgkkRLRDESGQLVKE--KANLYEEWKKK 715
                 9*********99888888..********99765.44442223334444444***********9..99*******97 PP

>> ResIII  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.7   0.0   3.7e-08   0.00016      28     170 ..      37     171 ..      19     172 .. 0.87

  Alignments for each domain:
  == domain 1  score: 21.7 bits;  conditional E-value: 3.7e-08
                 EEEESTTSTHHHHH.HHHHHHH-S.......-EEEEESSHHHHHHHHHHGGGGTGG....GEEEESSS-B--.......-SEEEEEHHHHHHTH..... CS
      ResIII  28 likmaTGtGKTlva.aklierllkkgkee..kflflvprkslleqtleefkkflseaykeigkkvsgdkkkakekdstnkkilvttiqsldadseeeee 123
                 +  + TG+GKT    + lie+l  +++    + l+l p+++l  q   +f+ +   ++  i++ ++   +++        ++lv t  +l+  +     
  KOO23333.1  37 VAMARTGSGKTAAFlIPLIEKLGAHASVVgvRGLVLSPTRELAMQPPMRFALVVGGDA--IEEQFETLARNP--------DVLVGTPGRLQHVL----- 120
                 44556******9998999999998777668899**********************997..888888888888........**************..... PP

                 ...HHHTTT-SEEEEETGGGTTS....TTTHHHHHT---.SEEEEEESS-S CS
      ResIII 124 eseellrdrfdviiiDEaHrlgak...kswreilekfke.avllglTATpe 170
                  + +l+ +r +++++DEa rl ++   ++  +il+++++    l ++AT++
  KOO23333.1 121 VDAQLSLQRVEYVVCDEADRLFEMgfaAQLDAILQSVPPtRQTLLFSATMP 171
                 9**********************96655888899999774667999**975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (758 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       593  (0.0330749); expected 358.6 (0.02)
Passed bias filter:                      397  (0.0221429); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.62u 0.27s 00:00:00.89 Elapsed: 00:00:00.42
# Mc/sec: 5402.76
//
Query:       KOO23334.1  [L=694]
Description: 40 kda cyclophilin [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    9.5e-15   55.0   0.9      4e-14   53.0   0.0    2.6  3  Aha1_N         Activator of Hsp90 ATPase, N-terminal
    2.8e-07   30.1   7.3      0.049   13.8   0.0    5.0  4  TPR_2          Tetratricopeptide repeat
    1.2e-06   28.1   5.9       0.21   11.5   0.0    4.4  4  TPR_1          Tetratricopeptide repeat
    7.1e-05   22.4   4.9     0.0044   16.7   0.5    3.4  3  TPR_11         TPR repeat
    8.1e-05   22.5   5.9      0.033   14.4   0.0    4.1  4  TPR_8          Tetratricopeptide repeat
    0.00013   22.0  12.0    0.00071   19.7   2.6    3.8  3  TPR_9          Tetratricopeptide repeat
  ------ inclusion threshold ------
       0.29   11.8   6.9         18    6.2   0.2    4.8  4  TPR_6          Tetratricopeptide repeat
       0.46   11.0   3.5        1.1    9.8   0.0    3.4  4  TPR_17         Tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> Aha1_N  Activator of Hsp90 ATPase, N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.0       3.5   7.9e+03     118     134 ..     350     366 ..     330     367 .. 0.81
   2 ?   -2.7   0.8       2.8   6.2e+03      90     114 ..     411     438 ..     392     446 .. 0.54
   3 !   53.0   0.0   1.8e-17     4e-14       1     129 [.     537     685 ..     537     692 .. 0.81

  Alignments for each domain:
  == domain 1  score: -3.0 bits;  conditional E-value: 3.5
      Aha1_N 118 gvpklreklakfvkeLk 134
                 ++ ++ ++l +f ++L 
  KOO23334.1 350 LKTVVSDALSDFAQALE 366
                 67889999999999994 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 2.8
      Aha1_N  90 ddyeievsvkk....deekkekqklkeli 114
                 d++ i+ +v+k    deekk+++++++l 
  KOO23334.1 411 DEP-ISFEVYKqqkkDEEKKDRERVEALQ 438
                 333.4445555334344444444444433 PP

  == domain 3  score: 53.0 bits;  conditional E-value: 1.8e-17
      Aha1_N   1 eKdatpWskerlkelllslkleneeaksvkitevksveGdasvnqrKgKvifiydlklklewegtvk...............kedgkkvkGeieipels 84 
                 eK + +W+k+ l++ l+ ++   e+ + ++it+vksveG asv+  +g v++iy+++l+lew+++                   + k ++G+++  e+s
  KOO23334.1 537 EKEMGDWCKAELTKVLETARGSAEQVQ-ISITKVKSVEGTASVVASRGQVRHIYEYALELEWKAKRLaelpppgvppavdakVIETKLCSGTLHYAEVS 634
                 89***************9999999998.*************************************8899999999999988766777899999999999 PP

      Aha1_N  85 se.nddd.......dyeievsvkkdeekkekqklkelikskgvpklreklakf 129
                  + + +        d +   + k + +++e   + ++  +++++ ++ ++ +f
  KOO23334.1 635 PTaTPGTvsgagcaDAT--HTYKAEVKEPELRPVAAAALEALKADVQRCIGEF 685
                 98554444444333222..3333355677777777777777777777777777 PP

>> TPR_2  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.1   0.4   0.00015      0.35       6      29 ..      58      81 ..      53      85 .. 0.89
   2 ?    3.2   0.4     0.052   1.2e+02       3      33 ..     103     133 ..     102     134 .. 0.90
   3 !   13.8   0.0   2.2e-05     0.049       2      34 .]     136     168 ..     135     168 .. 0.96
   4 ?    1.9   0.0      0.14   3.2e+02      19      33 ..     356     370 ..     354     371 .. 0.88

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00015
       TPR_2  6 nlGlayyklgdyeeAleafekAle 29
                  G+a++k+gd + A++ +++Al 
  KOO23334.1 58 DAGNALFKAGDNAAAIATYDEALN 81
                57********************96 PP

  == domain 2  score: 3.2 bits;  conditional E-value: 0.052
       TPR_2   3 alynlGlayyklgdyeeAleafekAleldPn 33 
                 +++n + a +kl  +e A++   ++lel+ +
  KOO23334.1 103 LHNNSAAAQIKLEAWEAAEASASQVLELEAD 133
                 5889999********************9865 PP

  == domain 3  score: 13.8 bits;  conditional E-value: 2.2e-05
       TPR_2   2 ealynlGlayyklgdyeeAleafekAleldPnn 34 
                 +al+++G+a  klg++  A +++ +A + dP++
  KOO23334.1 136 KALFRRGMARGKLGQLSSAQQDLLAACKADPKD 168
                 79*****************************86 PP

  == domain 4  score: 1.9 bits;  conditional E-value: 0.14
       TPR_2  19 eAleafekAleldPn 33 
                 +Al +f +Ale  P+
  KOO23334.1 356 DALSDFAQALEEVPT 370
                 79*********9997 PP

>> TPR_1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.1   0.6   0.00025      0.55       8      28 ..      60      80 ..      56      81 .. 0.96
   2 !    5.7   0.1    0.0063        14       3      34 .]     103     134 ..     101     134 .. 0.91
   3 !   11.5   0.0   9.4e-05      0.21       2      34 .]     136     168 ..     135     168 .. 0.95
   4 ?   -0.5   0.0      0.57   1.3e+03      19      31 ..     356     368 ..     355     371 .. 0.78

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.00025
                HHHHHHTT-HHHHHHHHHHHH CS
       TPR_1  8 GnayfklgkydeAleyyekAL 28
                Gna+fk g+   A++ y++AL
  KOO23334.1 60 GNALFKAGDNAAAIATYDEAL 80
                9*******************9 PP

  == domain 2  score: 5.7 bits;  conditional E-value: 0.0063
                 HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH CS
       TPR_1   3 alynlGnayfklgkydeAleyyekALelnPnn 34 
                  ++n ++a  kl+ ++ A++  +++Lel+ +n
  KOO23334.1 103 LHNNSAAAQIKLEAWEAAEASASQVLELEADN 134
                 58999**********************98665 PP

  == domain 3  score: 11.5 bits;  conditional E-value: 9.4e-05
                 HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH CS
       TPR_1   2 kalynlGnayfklgkydeAleyyekALelnPnn 34 
                 kal+++G+a  klg++  A ++   A + +P++
  KOO23334.1 136 KALFRRGMARGKLGQLSSAQQDLLAACKADPKD 168
                 89**************************99986 PP

  == domain 4  score: -0.5 bits;  conditional E-value: 0.57
                 HHHHHHHHHHHHS CS
       TPR_1  19 eAleyyekALeln 31 
                 +Al ++ +ALe  
  KOO23334.1 356 DALSDFAQALEEV 368
                 6999999999865 PP

>> TPR_11  TPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.5     2e-06    0.0044       1      29 [.      60      88 ..      60      91 .. 0.91
   2 ?    2.2   0.0     0.065   1.5e+02      18      42 .]     125     149 ..     112     149 .. 0.86
   3 !    5.4   0.1    0.0067        15       6      31 ..     147     172 ..     142     176 .. 0.88

  Alignments for each domain:
  == domain 1  score: 16.7 bits;  conditional E-value: 2e-06
      TPR_11  1 GdayyeqGkyeeAieaYkkAlkldPdnae 29
                G+a+++ G++ +Ai+ Y +Al+   d ++
  KOO23334.1 60 GNALFKAGDNAAAIATYDEALNAVKDAPT 88
                9********************98877775 PP

  == domain 2  score: 2.2 bits;  conditional E-value: 0.065
      TPR_11  18 kkAlkldPdnaeayynLGlayykqG 42 
                 ++ l+l  dn  a++ +G a  k+G
  KOO23334.1 125 SQVLELEADNSKALFRRGMARGKLG 149
                 699***************9999988 PP

  == domain 3  score: 5.4 bits;  conditional E-value: 0.0067
      TPR_11   6 eqGkyeeAieaYkkAlkldPdnaeay 31 
                 ++G++  A +++ +A+k dP++ +a 
  KOO23334.1 147 KLGQLSSAQQDLLAACKADPKDKNAR 172
                 68*******************98876 PP

>> TPR_8  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.2   0.2    0.0015       3.3       8      29 ..      60      81 ..      58      82 .. 0.92
   2 ?   -0.5   0.2      0.89     2e+03      13      34 .]     113     134 ..     102     134 .. 0.76
   3 !   14.4   0.0   1.5e-05     0.033       2      34 .]     136     168 ..     135     168 .. 0.96
   4 ?   -3.8   0.0         8   1.8e+04       7      21 ..     254     268 ..     253     269 .. 0.78

  Alignments for each domain:
  == domain 1  score: 8.2 bits;  conditional E-value: 0.0015
                HHHHHHTT-HHHHHHHHHHHHH CS
       TPR_8  8 gsiylklgdyeeAkeyyekale 29
                g++++k gd  +A+++y +al 
  KOO23334.1 60 GNALFKAGDNAAAIATYDEALN 81
                899*****************95 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 0.89
                 HTT-HHHHHHHHHHHHHHHHH. CS
       TPR_8  13 klgdyeeAkeyyekaleldpdn 34 
                 kl+  e+A+++  ++lel+ dn
  KOO23334.1 113 KLEAWEAAEASASQVLELEADN 134
                 5555599***********9876 PP

  == domain 3  score: 14.4 bits;  conditional E-value: 1.5e-05
                 CHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH. CS
       TPR_8   2 eayynlgsiylklgdyeeAkeyyekaleldpdn 34 
                 +a+++ g++  klg++ +A++ +  a+++dp++
  KOO23334.1 136 KALFRRGMARGKLGQLSSAQQDLLAACKADPKD 168
                 799****************************96 PP

  == domain 4  score: -3.8 bits;  conditional E-value: 8
                 HHHHHHHTT-HHHHH CS
       TPR_8   7 lgsiylklgdyeeAk 21 
                  +++ + lgd   A+
  KOO23334.1 254 RARLRKFLGDAADAV 268
                 577889999998886 PP

>> TPR_9  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.5   0.3     0.004         9      27      72 ..      51      96 ..      39      97 .. 0.92
   2 !   19.7   2.6   3.2e-07   0.00071       6      67 ..     112     173 ..     108     181 .. 0.91
   3 ?   -1.5   0.1       1.3   2.9e+03      46      66 ..     355     375 ..     353     377 .. 0.82

  Alignments for each domain:
  == domain 1  score: 6.5 bits;  conditional E-value: 0.004
       TPR_9 27 ddpeerrdRGlllaqlGclsaAladLeaylalapdapdaeairaqL 72
                +d+  + d G +l++ G+ +aA+a  + +l    dap+   ++++L
  KOO23334.1 51 EDATRLKDAGNALFKAGDNAAAIATYDEALNAVKDAPTSNEAKELL 96
                6888899************************************998 PP

  == domain 2  score: 19.7 bits;  conditional E-value: 3.2e-07
       TPR_9   6 ireedweralavverllllaPddpeerrdRGlllaqlGclsaAladLeaylalapdapdaea 67 
                 i  e we+a a +  +l l  d    ++ RG+++ +lG+ls A +dL a+   +p++  a+a
  KOO23334.1 112 IKLEAWEAAEASASQVLELEADNSKALFRRGMARGKLGQLSSAQQDLLAACKADPKDKNARA 173
                 67799**************************************************7777764 PP

  == domain 3  score: -1.5 bits;  conditional E-value: 1.3
       TPR_9  46 saAladLeaylalapdapdae 66 
                 s Al d+ ++l+  p  + ae
  KOO23334.1 355 SDALSDFAQALEEVPTSALAE 375
                 679999999999999877765 PP

>> TPR_6  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.2   0.1     0.017        37       7      28 ..      60      81 ..      58      83 .. 0.89
   2 ?    6.2   0.2    0.0082        18       2      22 ..     137     157 ..     136     167 .. 0.84
   3 ?   -0.6   0.1       1.2   2.7e+03       5      21 ..     253     269 ..     253     270 .. 0.83
   4 ?   -2.0   0.0       3.5   7.8e+03      17      33 .]     355     371 ..     345     371 .. 0.71

  Alignments for each domain:
  == domain 1  score: 5.2 bits;  conditional E-value: 0.017
                HHHHHHHHHHHHHHHHHHHHHH CS
       TPR_6  7 alsyrklgdtdkAlealerlik 28
                + +++k+gd ++A++++++ ++
  KOO23334.1 60 GNALFKAGDNAAAIATYDEALN 81
                7899**99*********99875 PP

  == domain 2  score: 6.2 bits;  conditional E-value: 0.0082
                 HHHHHHHHHHHHHHHHHHHHH CS
       TPR_6   2 AlyklalsyrklgdtdkAlea 22 
                 Al+++++++ klg+ + A + 
  KOO23334.1 137 ALFRRGMARGKLGQLSSAQQD 157
                 9**********99**999884 PP

  == domain 3  score: -0.6 bits;  conditional E-value: 1.2
                 HHHHHHHHHHHHHHHHH CS
       TPR_6   5 klalsyrklgdtdkAle 21 
                 ++a++++ lgd+++A++
  KOO23334.1 253 RRARLRKFLGDAADAVA 269
                 5788888899*****97 PP

  == domain 4  score: -2.0 bits;  conditional E-value: 3.5
                 HHHHHHHHHHHHH-TT- CS
       TPR_6  17 dkAlealerlikeYPdS 33 
                 ++Al  + + ++e P+S
  KOO23334.1 355 SDALSDFAQALEEVPTS 371
                 56777788888887776 PP

>> TPR_17  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.1       5.6   1.2e+04      20      33 ..      60      73 ..      60      74 .. 0.85
   2 ?    9.8   0.0   0.00048       1.1       4      34 .]     126     156 ..     124     156 .. 0.94
   3 ?   -1.1   0.0       1.4   3.2e+03       3      21 ..     159     177 ..     158     185 .. 0.79
   4 ?   -1.5   0.0         2   4.5e+03      19      33 ..     254     268 ..     252     269 .. 0.87

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 5.6
      TPR_17 20 AelllknGdlmtAr 33
                +++l k+Gd + A+
  KOO23334.1 60 GNALFKAGDNAAAI 73
                688999***99997 PP

  == domain 2  score: 9.8 bits;  conditional E-value: 0.00048
      TPR_17   4 kaleldPnnadaynnLAelllknGdlmtArq 34 
                 ++lel+ +n++a++ ++ +  k+G+l  A+q
  KOO23334.1 126 QVLELEADNSKALFRRGMARGKLGQLSSAQQ 156
                 689***********************99997 PP

  == domain 3  score: -1.1 bits;  conditional E-value: 1.4
      TPR_17   3 lkaleldPnnadaynnLAe 21 
                 l a + dP++ +a  +L +
  KOO23334.1 159 LAACKADPKDKNARAELVT 177
                 678899****999888755 PP

  == domain 4  score: -1.5 bits;  conditional E-value: 2
      TPR_17  19 LAelllknGdlmtAr 33 
                 +A+l + +Gd ++A+
  KOO23334.1 254 RARLRKFLGDAADAV 268
                 89999******9996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (694 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1684  (0.093926); expected 358.6 (0.02)
Passed bias filter:                      451  (0.0251548); expected 358.6 (0.02)
Passed Vit filter:                        53  (0.0029561); expected 17.9 (0.001)
Passed Fwd filter:                        16  (0.000892409); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.69u 0.26s 00:00:00.95 Elapsed: 00:00:00.41
# Mc/sec: 5135.63
//
Query:       KOO23335.1  [L=231]
Description: hypothetical protein Ctob_000218 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.8e-05   24.6   0.0    4.5e-05   23.3   0.0    1.7  1  Galactosyl_T  Galactosyltransferase
  ------ inclusion threshold ------
      0.097   12.1   0.0       0.14   11.5   0.0    1.2  1  Fringe        Fringe-like


Domain annotation for each model (and alignments):
>> Galactosyl_T  Galactosyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.3   0.0   5.1e-09   4.5e-05      73     174 ..      22     129 ..       4     159 .. 0.72

  Alignments for each domain:
  == domain 1  score: 23.3 bits;  conditional E-value: 5.1e-09
  Galactosyl_T  73 wavskvpeaklilkvDdDvyvnpdkLlsllkrelidpsessvygkvl..kegavirkkksk.......wyvs.eeeykfsryppyasGtlYvlsrea 159
                   +a+     + ++++vDdD +v++++L s l+    +p  + vyg  +    ++++++k+         w++    ++  ++  p++sG+l vlsr +
    KOO23335.1  22 FAA--STGVPYVGRVDDDTFVHVPNLESDLESLYCHP--QLVYGVSAfvGYNPTTFRKCGYswsgnraWRKYgCGATGAHEATPFVSGMLQVLSRGL 114
                   433..34568**********************95555..5566554421444555555544877666644331455566669*************** PP

  Galactosyl_T 160 vekllkaskhrkflk 174
                   ++ ++ +++ r f++
    KOO23335.1 115 AHTVASSEEVRAFVA 129
                   *****9999998875 PP

>> Fringe  Fringe-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   1.6e-05      0.14      88     195 ..      29     156 ..       9     173 .. 0.63

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 1.6e-05
      Fringe  88 kWfchvDDDnylnveaLlk.lLskynhtqdvy.lGkpsldrpieaterteenk....kkkvkfwfatGGa...........Gf..clsralalklaPwa 167
                  ++ +vDDD+++ v++L + l s y h q vy +    +++p++  ++  + +        k+      a           G+  +lsr+la+ +a  +
  KOO23335.1  29 PYVGRVDDDTFVHVPNLESdLESLYCHPQLVYgVSAFVGYNPTTF-RKC-GYSwsgnRAWRKYGCG---AtgaheatpfvsGMlqVLSRGLAHTVASSE 122
                 56678************8625567999999994444455555555.333.3331122223333333...234478888888765589999999998888 PP

      Fringe 168 sggrfvstseki.rl.....pdDctlGfiieelL 195
                 +   fv  ++ +  +      +D++lG+ + +lL
  KOO23335.1 123 EVRAFVARASAViDMvtwdkTEDVVLGYWLVQLL 156
                 8888776655432332223268999999887744 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (231 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       309  (0.0172346); expected 358.6 (0.02)
Passed bias filter:                      267  (0.0148921); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.42u 0.24s 00:00:00.65 Elapsed: 00:00:00.41
# Mc/sec: 1702.08
//
Query:       KOO23336.1  [L=604]
Description: hypothetical protein Ctob_006219 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    6.9e-09   36.0   0.0    1.9e-08   34.5   0.0    1.7  1  Methyltransf_21  Methyltransferase FkbM domain


Domain annotation for each model (and alignments):
>> Methyltransf_21  Methyltransferase FkbM domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.5   0.0   1.1e-12   1.9e-08       3     167 ..     428     572 ..     426     577 .. 0.75

  Alignments for each domain:
  == domain 1  score: 34.5 bits;  conditional E-value: 1.1e-12
  Methyltransf_21   3 Ganigv.wdsfanltarlcggggevlaiEPvpnslpkfeklranlltlavgndvglyelivegksggkyfpfavgdtngfsts..svlggedar 93 
                      Ga  g  +ds+  +++r +g++g    +E++p+    f+kl+         ++ +  e+ +  +   + + fa  d+++         ++++++
       KOO23336.1 428 GAVQGTvYDSNSIFFERFLGWKGLL--VEANPY---SFAKLMTR------RPGSYRTETALCER--VSTLRFALPDKQRTADGccG--KANNEG 506
                      55554457888889999******99..******...99999777......33344433333333..34566666666666665334..35999* PP

  Methyltransf_21  94 yievpvvtldsfleeikksridllkiDvEGaElevLeGaqkglkrcqpnlivvEvhkfkefetelfdeirqflr 167
                          +++ ++++l+  + ++id+  +DvEG+ElevL  +  ++ r+ ++++ +Ev        ++     qfl+
       KOO23336.1 507 NYAARCTPVSEILRGCGVTHIDFWSLDVEGGELEVL--KGFDWHRHSMSVLLIEVWA------SSRNTYAQFLQ 572
                      **************99********************..66***********9**987......44445555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (604 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       420  (0.0234257); expected 358.6 (0.02)
Passed bias filter:                      327  (0.0182386); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.56u 0.23s 00:00:00.79 Elapsed: 00:00:00.42
# Mc/sec: 4367.61
//
Query:       KOO23337.1  [L=333]
Description: peroxisomal biogenesis factor 3 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.7e-17   63.6   9.5    1.4e-07   30.9   0.0    4.1  3  Peroxin-3  Peroxin-3


Domain annotation for each model (and alignments):
>> Peroxin-3  Peroxin-3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.9   2.5   0.00059        11       5      90 ..       7     111 ..       3     119 .. 0.67
   2 !   28.3   0.9   4.7e-11   8.5e-07     174     225 ..     120     170 ..     117     211 .. 0.86
   3 !   30.9   0.0   7.9e-12   1.4e-07     358     468 ..     226     330 ..     210     331 .. 0.90

  Alignments for each domain:
  == domain 1  score: 4.9 bits;  conditional E-value: 0.00059
   Peroxin-3   5 rnrrklaitagvvgagYlakqYvlkkleearerlsseriake....................nLrrRFeqnqeDctfTvlaLLPtlteqilealdvEei 83 
                 r++rk++ ta v ga+ +   Y+++k +e  e ++s  +  e                     +r +F+ +q      + + LP l+eqi   + ++++
  KOO23337.1   7 RHKRKIVATAVVGGATAYGVYYLYRKKRELDELVESLGL-NEllyggsanssgarssatqeeRVREHFDDTQREADRLLCEALPRLQEQIAGLIMTDAL 104
                 566666555555555544445555555555444333332.23355555555555555555559****************************99999999 PP

   Peroxin-3  84 tqeLqqk 90 
                  + L+ +
  KOO23337.1 105 QERLRAE 111
                 9999875 PP

  == domain 2  score: 28.3 bits;  conditional E-value: 4.7e-11
   Peroxin-3 174 WnelkiksitRtltliYtlslLtLltriQLnlLgRrsYLssvvslakeeete 225
                 W+elk+  ++R+lt  Y+l+l +L +ri Ln++gR  YL+ + + a +++ +
  KOO23337.1 120 WHELKVLVVSRLLTAQYALVLTVLAIRIRLNIIGR-HYLNEAQAAADGTRLD 170
                 **********************************9.5*****9999988754 PP

  == domain 3  score: 30.9 bits;  conditional E-value: 7.9e-12
   Peroxin-3 358 sssLrkLldETsdliespdfslvleslldegfstllesleaevafkkkesasssekaeeeeeeeeekkvkLAkllpvlsrqahailngvpneyleales 456
                 +++L++LldE ++l+ s++f++ le+ll+ +f+t+ e+l++ +   +   a++ +       +++++ +  Akllp  ++ + a l +    y +al +
  KOO23337.1 226 TTQLQELLDEVRTLVGSNAFRITLEKLLEVTFATVGEQLQQAIGGGNGCGAATGT-----VPKRAGTVLTRAKLLPKYKQLSTATLAAH-EPYAAALLE 318
                 689**************************************99999776444443.....4578899999*****************97.9******** PP

   Peroxin-3 457 vreLeafsAvvY 468
                 v+ L++f   vY
  KOO23337.1 319 VPSLQDFCWQVY 330
                 *******99998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (333 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       759  (0.0423336); expected 358.6 (0.02)
Passed bias filter:                      607  (0.0338558); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.51u 0.24s 00:00:00.75 Elapsed: 00:00:00.40
# Mc/sec: 2491.65
//
Query:       KOO23338.1  [L=642]
Description: glycogen debranching enzyme [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.2e-06   26.3   0.0    0.00038   19.4   0.0    2.8  2  Trehalase       Trehalase
  ------ inclusion threshold ------
      0.028   13.2   0.0      0.045   12.5   0.0    1.2  1  Glyco_hydro_63  Glycosyl hydrolase family 63 C-terminal domai


Domain annotation for each model (and alignments):
>> Trehalase  Trehalase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    3.0   0.0     0.004        36     155     220 ..     281     351 ..     257     382 .. 0.78
   2 !   19.4   0.0   4.2e-08   0.00038     305     490 ..     416     620 ..     393     624 .. 0.75

  Alignments for each domain:
  == domain 1  score: 3.0 bits;  conditional E-value: 0.004
                 HHHHHHHHH...HSS--S..BSBGGGTT---S--HHHHHHHHHHHCHCCHHHHHHHHHHHHHHHCCTTTCC CS
   Trehalase 155 enfiyliek...YGkilN..gnRsYYlsRSQPPlltdmvlrvyekteddallravlaalkkeyefwmaeqr 220
                  nfi +i      G+++N  ++ s    R+ PP+ ++++l++y+k +d  l++  ++ l +  + ++   +
  KOO23338.1 281 SNFIQVIRSktaAGFVPNysAGGSKSVDRTEPPVGAKVLLEMYNKYKDAWLVQLLFEDLLEWNSWFLTARA 351
                 5777777532226888886666777899**************************99999999998886554 PP

  == domain 2  score: 19.4 bits;  conditional E-value: 4.2e-08
                 E-HHHHHHHHHHHHHHHHCCCHCC-CCHHHHHHHHHHHHHHHHHHHCEETTTT..EE--EETTTTEE----BGGGGHHHHCT-S-HHHHHHHHHHCHHH CS
   Trehalase 305 vpvDLNallyklekdiaefedklgdsetseefeekaekrkkaidkvLWneeag..vylDYdlkkkkqtnyesatnlvpLwaglaskeqaaklvakvlek 401
                   v + +++++  + +a+++  +g+se   e  ++a  +++ i k+LW+++ g  ++   +  + +  ++++ t++++L ag+a++eqa+++++k l +
  KOO23338.1 416 YDVGMASMFVQEAEALATLAPIAGKSELVDELIARAAMQRALIAKHLWDDAPGgrIFTN-KYWNGTFDRRITPTSFYALMAGAATDEQAKTMISKWLLS 513
                 4577889999999************************************9876444544.4445788999*************************9999 PP

                 HCCCCCEES..........CCCC-SBSSS-SSTTSTT..........EEEHHHHHHHHHHHHHTT-....HHHHHHHHHHHHHHHHHHHHHCTSEBSCE CS
   Trehalase 402 leesgllva..........egglgtsllksgrQWDyP..........ngWaPlqilavegleryge....eelaerlaerwlktvtkafsdegklvEKY 476
                  e++ +               gl+        Q   P          ++W P++ l+   l+ y +    +   + l ++    + + +++++++ E +
  KOO23338.1 514 PEHFCIAPKgdfmgnhddcYWGLPS------IQFSDPafpplgywrgYVWGPMTQLVYWSLQAYDHvpevRAGRKALCKQMTALMLSQWRQHRHICENF 606
                 8887666543332333233334444......44433322233333338999999999999999988876555567788888888889999999999999 PP

                 ETTSTSTTBTT-SS CS
   Trehalase 477 dvtreaeygGggge 490
                   +r+a+  Gg+  
  KOO23338.1 607 SPHRTADDHGGDCS 620
                 98888887777765 PP

>> Glyco_hydro_63  Glycosyl hydrolase family 63 C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0     5e-06     0.045     382     485 ..     534     631 ..     526     636 .. 0.71

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 5e-06
                     TEEBSB-TTSTTTT-.....TT-SSSS-B-HHHHHHHHHHHHHH---SS-.--HHHHHHHHHHHHHHHHHHHHHHHTSS--SEE-TTT......- CS
  Glyco_hydro_63 382 yGlrslskksslygkrntehdenYWrgpiWininylilsalkhyskvegpykekakeiykeLrsnlvnnivkqyketGfvweqYddkt......G 470
                     +Gl s++ +++ +          YWrg++W  +  l+  +l+ y +v+       ++  k L + +   +++q+++  ++ e+++++       G
      KOO23338.1 534 WGLPSIQFSDPAFPP------LGYWRGYVWGPMTQLVYWSLQAYDHVPEV-----RAGRKALCKQMTALMLSQWRQHRHICENFSPHRtaddhgG 617
                     566666666666665......67*********************977644.....4445667777778889999999999999975432221113 PP

                     -EESSSS-TTGGGGH CS
  Glyco_hydro_63 471 kgkgakeFtGWtslv 485
                        g ++F  W +l 
      KOO23338.1 618 DCSG-TKFYHWGALA 631
                     3333.4677788775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (642 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       425  (0.0237046); expected 358.6 (0.02)
Passed bias filter:                      379  (0.0211389); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.58u 0.24s 00:00:00.82 Elapsed: 00:00:00.43
# Mc/sec: 4527.82
//
Query:       KOO23339.1  [L=1871]
Description: hypothetical protein Ctob_006215, partial [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.3e-09   37.5   1.2    1.5e-08   34.1   0.8    2.1  2  MOR2-PAG1_N  Cell morphogenesis N-terminal


Domain annotation for each model (and alignments):
>> MOR2-PAG1_N  Cell morphogenesis N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.1   0.8   8.5e-13   1.5e-08      60     207 ..     175     332 ..     151     334 .. 0.91
   2 !    1.2   0.0    0.0076   1.4e+02     450     515 ..     531     600 ..     518     615 .. 0.82

  Alignments for each domain:
  == domain 1  score: 34.1 bits;  conditional E-value: 8.5e-13
  MOR2-PAG1_N  60 nwnlfAelLGvlSeirFasVsdrFiaeLeklrkeaskeleaklellirGmrylklkvypeeafeesadFlkslakffeeakgsevkhAyaellselLl 157
                    ++ A  +G+lS+ + +   d+F+++ ++l     ++ + ++  + ++  +l + +++ e+  +sa+Fl  +ak  + +    ++  +a  l  lL 
   KOO23339.1 175 IRHVAARCVGLLSRAHLKATVDKFLEKASRLAT---DKEQREYVAFAKAAEHLEISTHSAEQASASAKFLTVVAKAMASMSRGVLRAQLAASLRTLLS 269
                  347899*************************99...4469999******************************************************* PP

  MOR2-PAG1_N 158 pvaasataevnhpk.............waeavellypraakmskkpkhwnaafpLvttlLCvs 207
                   + +  t+ +                 w +a + +y+ a k  kkp h    ++L++t+L+++
   KOO23339.1 270 RLMDAPTKALAREWrdfcsaggaevgaWWQAYTAVYEAAFKWAKKPTHAPFSYQLLVTMLALA 332
                  ***9999877776677889*****************************************875 PP

  == domain 2  score: 1.2 bits;  conditional E-value: 0.0076
  MOR2-PAG1_N 450 LlktaiealPrclpesipfksliel..LcrgtvHvdpeiaesaaqaLkaliarqkkrqq..vvtgfarfi 515
                  Ll  +i+a+Pr+   ++  ++  +l  ++r++v+ + e   +a+++L+ l+a q  r +  v+t++ar++
   KOO23339.1 531 LLPALIAAVPRLWALETDAEECADLawMARLLVSEEAETHIAAFECLQLLMALQRARLTvpVLTAVARML 600
                  88899******99999888888665559*********************999987776512566666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1871 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       579  (0.032294); expected 358.6 (0.02)
Passed bias filter:                      335  (0.0186848); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.98u 0.25s 00:00:01.23 Elapsed: 00:00:00.47
# Mc/sec: 11983.33
//
Query:       KOO23340.1  [L=411]
Description: putative s-acyltransferase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.3e-36  125.7  13.4    1.3e-36  125.7  13.4    1.9  2  DHHC      DHHC palmitoyltransferase
  ------ inclusion threshold ------
       0.31   10.5   1.2        3.3    7.1   0.3    2.2  2  DUF1129   Protein of unknown function (DUF1129)
        1.5    8.5   8.4       0.19   11.4   0.2    2.7  3  Yip1      Yip1 domain
        3.5    7.1   7.9        1.3    8.4   4.4    2.1  3  SKG6      Transmembrane alpha-helix domain
        4.7    7.1   6.1         21    5.0   0.0    2.6  2  LapA_dom  Lipopolysaccharide assembly protein A domain


Domain annotation for each model (and alignments):
>> DHHC  DHHC palmitoyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.2       1.2   4.2e+03      88      88 ..     109     109 ..      77     139 .. 0.46
   2 !  125.7  13.4   3.6e-40   1.3e-36       3     133 ..     154     302 ..     152     303 .. 0.91

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 1.2
        DHHC  88 v 88 
                 +
  KOO23340.1 109 I 109
                 1 PP

  == domain 2  score: 125.7 bits;  conditional E-value: 3.6e-40
        DHHC   3 kelkfCstcniykpprskHcrvCnrcvlrfDHhCpwlnnciGerNykyFllfllylllllilalvlllialvklveeekkseflavtllkk........ 93 
                 +e++fC+tc++++p+rskHc +Cn+cv+rfDHhCpwln+c+GerNy++F+lflly+++l+++  +++  ++ +l  + +  +   +    +        
  KOO23340.1 154 YEPRFCRTCQVPRPARSKHCVICNKCVARFDHHCPWLNSCVGERNYRWFMLFLLYHSILCFYSSYIHARIIEHLALDVHRLDQAHYYD--Etgtpqavt 250
                 6899*****************************************************************9999998888765553322..2357999** PP

        DHHC  94 ............llsilllvlsllfllllgllllfhlylilrnlTtieamkk 133
                              +++ + +++l++++ l+ +  +h+yli+ ++Tt+e++k+
  KOO23340.1 251 vlqgvqylfvhhNMTMAIGIFCLVIGFALWGFWAYHMYLIWCGTTTNETFKW 302
                 *********99988899999999999999999****************9986 PP

>> DUF1129  Protein of unknown function (DUF1129)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.6   0.0     0.046   1.7e+02     113     135 ..      77      99 ..      72     137 .. 0.68
   2 ?    7.1   0.3   0.00093       3.3      92     133 ..     249     290 ..     246     302 .. 0.88

  Alignments for each domain:
  == domain 1  score: 1.6 bits;  conditional E-value: 0.046
     DUF1129 113 litlllvalvgGlamvlvyrllt 135
                 l+ l+ val++G +++++++ l 
  KOO23340.1  77 LLQLFYVALMAGGFYLFYNKSLP 99 
                 788999******99999998874 PP

  == domain 2  score: 7.1 bits;  conditional E-value: 0.00093
     DUF1129  92 fallfgilalfskkkqtasiGlitlllvalvgGlamvlvyrl 133
                 +++l g+ +lf ++++t +iG+  l++  ++ G+  + +y +
  KOO23340.1 249 VTVLQGVQYLFVHHNMTMAIGIFCLVIGFALWGFWAYHMYLI 290
                 799************************999999988888755 PP

>> Yip1  Yip1 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.0   0.6     0.086   3.1e+02      69     102 ..       9      42 ..       3      49 .. 0.72
   2 ?   -1.2   0.1      0.39   1.4e+03      75      86 ..      81      92 ..      72     147 .. 0.51
   3 ?   11.4   0.2   5.3e-05      0.19      21      90 ..     198     291 ..     182     301 .. 0.66

  Alignments for each domain:
  == domain 1  score: 1.0 bits;  conditional E-value: 0.086
        Yip1  69 gylglllgllllalllhliakllggkgsfkqtls 102
                  ++g+ +g+ +l ++l ++a   g  g + ++++
  KOO23340.1   9 VAVGVAVGVGFLLYVLMFGASSTGVIGKLHDWMC 42 
                 4556667777777777777777777777777776 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 0.39
        Yip1 75 lgllllalllhl 86
                + ++l+a+ ++l
  KOO23340.1 81 FYVALMAGGFYL 92
                333333333333 PP

  == domain 3  score: 11.4 bits;  conditional E-value: 5.3e-05
        Yip1  21 apdlallllalltlllgllas...........................lnlgqtlasg........eevqgltlssllgaiiggylglllgllllalll 84 
                 ++++ +l+l+  ++l+++ +                                     +        ++  + ++++++ +i+ +++g ++ + ++a+++
  KOO23340.1 198 NYRWFMLFLLYHSILCFYSSYihariiehlaldvhrldqahyydetgtP--------QavtvlqgvQYLFVHHNMTMAIGIFCLVIG-FALWGFWAYHM 287
                 5666666666666666666666666666665555555444444333332........034444445777788899999998888887.99999999999 PP

        Yip1  85 hliakl 90 
                 +l   +
  KOO23340.1 288 YL--IW 291
                 99..44 PP

>> SKG6  Transmembrane alpha-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.4   4.4   0.00037       1.3      10      28 ..       7      25 ..       5      28 .. 0.83
   2 ?   -3.0   0.0       1.4     5e+03      25      38 .]      84      97 ..      83      97 .. 0.77
   3 ?   -2.5   0.0      0.96   3.4e+03       9      14 ..     265     270 ..     261     280 .. 0.60

  Alignments for each domain:
  == domain 1  score: 8.4 bits;  conditional E-value: 0.00037
        SKG6 10 vaIavaVaVPVaViiivLl 28
                + +av+VaV+V+  + vL 
  KOO23340.1  7 AVVAVGVAVGVGFLLYVLM 25
                789********99888886 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 1.4
        SKG6 25 ivLlailifvrRRk 38
                ++ ++++++ + ++
  KOO23340.1 84 ALMAGGFYLFYNKS 97
                67788999999775 PP

  == domain 3  score: -2.5 bits;  conditional E-value: 0.96
        SKG6   9 tvaIav 14 
                 t aI++
  KOO23340.1 265 TMAIGI 270
                 555554 PP

>> LapA_dom  Lipopolysaccharide assembly protein A domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.2   3.1     0.044   1.6e+02      20      39 ..       8      27 ..       6      33 .. 0.86
   2 ?    5.0   0.0    0.0057        21      23      58 ..     269     320 ..     247     326 .. 0.66

  Alignments for each domain:
  == domain 1  score: 2.2 bits;  conditional E-value: 0.044
    LapA_dom 20 sllllvafgiGallgwllsl 39
                ++ + va+g+G+ll +l++ 
  KOO23340.1  8 VVAVGVAVGVGFLLYVLMFG 27
                67899***********9986 PP

  == domain 2  score: 5.0 bits;  conditional E-value: 0.0057
    LapA_dom  23 llvafgiGallgwllslwsyl................rlrrelrrlkkkikk 58 
                  +++++iG+ l +++++ +yl                +  +++r ++k+i++
  KOO23340.1 269 GIFCLVIGFALWGFWAYHMYLiwcgtttnetfkwgdlKDELRHRMQRKQIER 320
                 468999**********999997776666665555544344444444666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (411 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1056  (0.058899); expected 358.6 (0.02)
Passed bias filter:                      552  (0.0307881); expected 358.6 (0.02)
Passed Vit filter:                        58  (0.00323498); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.56u 0.25s 00:00:00.81 Elapsed: 00:00:00.44
# Mc/sec: 2814.87
//
Query:       KOO23341.1  [L=609]
Description: polyadenylate-binding protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.2e-22   78.7   0.0    9.7e-12   44.5   0.0    2.6  2  RRM_1           RNA recognition motif. (a.k.a. RRM, RBD, or R
     0.0084   15.9   0.0      0.016   15.0   0.0    1.5  1  OST-HTH         OST-HTH/LOTUS domain
  ------ inclusion threshold ------
       0.24   11.5   0.3       0.46   10.6   0.3    1.4  1  IPU_b_solenoid  Isopullulanase beta-solenoid repeat


Domain annotation for each model (and alignments):
>> RRM_1  RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.5   0.0   1.6e-15   9.7e-12       1      69 [.     222     294 ..     222     295 .. 0.91
   2 !   31.4   0.0     2e-11   1.2e-07       1      68 [.     311     382 ..     311     383 .. 0.86

  Alignments for each domain:
  == domain 1  score: 44.5 bits;  conditional E-value: 1.6e-15
                 EEEESETTTSSHHHHHHHHHTTSC....EEEEEEEEETTTSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEE CS
       RRM_1   1 lfVgnLppdvteeeLkelFskfGp....iksiklvrdetgkskgfafVeFeskedAekAlealngkklggrel 69 
                 l+Vg Lppd+t +eL+elF +f p     ++++l++d  g+++gf++Ve + +e A +Ale+l   +l+g++l
  KOO23341.1 222 LYVGRLPPDTTLRELYELFAPFAPnpkdLVHVQLPCDVEGRPRGFGIVELARPEMASAALEKLEVVELRGSQL 294
                 8*********************974444799*******************************99888887765 PP

  == domain 2  score: 31.4 bits;  conditional E-value: 2e-11
                 EEEESETTTSSHHHHHHHHHTTS..C..EEEEEEEEETTTSEEEEEEEEESSHHHHHHHHHHHTTEEETTEE CS
       RRM_1   1 lfVgnLppdvteeeLkelFskfG..p..iksiklvrdetgkskgfafVeFeskedAekAlealngkklggre 68 
                 ++VgnL p ++ + Lk +  + G  p     + +v +e+g+s g++fVeF +  +A++A+  l++  l+gr 
  KOO23341.1 311 VYVGNLDPRTSLQGLKNHVLGAGadPtnTAAVHVVMNENGRSVGYGFVEFRTAAAADAAVWMLHNNVLDGRY 382
                 8****************99887744422455666666********************************996 PP

>> OST-HTH  OST-HTH/LOTUS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.0   2.7e-06     0.016       9      63 ..     467     516 ..     460     525 .. 0.80

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 2.7e-06
                 HHHHHHHHTTTTSBEHHHHHHHHHHHHSST-STCCCTSSSHHHHHHTSTTTEEEE CS
     OST-HTH   9 eirelLrsdpdgwvslsrlgslykkkygksfdprkyGfskLseLlkalpdvveve 63 
                 ++r+l+       + +++l+ ly   yg+ + pr +G+ +L+e l++ +  + ++
  KOO23341.1 467 RVRSLVTA----RMEVAQLPGLYEMAYGSRIEPRALGYASLREALHEVQG-LSLD 516
                 55555555....4789****************************999887.6555 PP

>> IPU_b_solenoid  Isopullulanase beta-solenoid repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.3   7.7e-05      0.46       1      16 [.     419     434 ..     419     435 .. 0.88

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 7.7e-05
  IPU_b_solenoid   1 WKtntAPivqfGWysR 16 
                     W    AP v++GW+ R
      KOO23341.1 419 WVDASAPLVEWGWAER 434
                     66778*********99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (609 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       466  (0.0259914); expected 358.6 (0.02)
Passed bias filter:                      310  (0.0172904); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.56u 0.28s 00:00:00.84 Elapsed: 00:00:00.44
# Mc/sec: 4156.35
//
Query:       KOO23342.1  [L=707]
Description: kif5c protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.5e-78  264.1   0.0    2.7e-78  263.2   0.0    1.4  1  Kinesin      Kinesin motor domain
    6.1e-16   58.7   0.0    1.7e-14   54.0   0.0    2.5  2  Microtub_bd  Microtubule binding


Domain annotation for each model (and alignments):
>> Kinesin  Kinesin motor domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  263.2   0.0     3e-82   2.7e-78      36     332 ..      61     453 ..      21     454 .. 0.94

  Alignments for each domain:
  == domain 1  score: 263.2 bits;  conditional E-value: 3e-82
                 CTTSCEEEEESEEEETTS-HHHHHHHHHHHHHHHHHTTSEEEEEEEESTTSSHHHHHTBC...TTTSBSHHHHHHHHHHHHHHHCTTTH.......... CS
     Kinesin  36 keeeekkfkFdkvfdeeatqeevyeetakplvesvleGynatifaYGqtgsGKTyTmegk...eeeeeGiipraleelFesikkekeek.......... 121
                 +     +f+F++vfd ea++++vy+++ +plv+svl+Gyn+t++aYGqtg+GKTyT++      ++ eG++pr+l+ lF   +++   k          
  KOO23342.1  61 SLADGGRFSFNHVFDGEADNARVYRQLGQPLVRSVLDGYNGTLIAYGQTGTGKTYTLNEPgrlGTAAEGLMPRMLRALFADAQASALAKthattdsvaa 159
                 5556679***************************************************9888978889**************9988777899******* PP

                 .......................................................................EEEEEEEEEEEEEETTEEEETTSTTT.T CS
     Kinesin 122 .......................................................................ekefsvkvsylEiYneeiyDLLeskk.s 148
                                                                                           +s++++y+++Y +++yDLL++   +
  KOO23342.1 160 sttasgypsddepdepdepsddedgdrlaeigncspvpvvfggrsssprrarapalvsvtealptaptapaGCAISISLQYVQVYLDKVYDLLAEGGgE 258
                 **********************************************************************98899*******************99865 PP

                 STSSEBEEEECTTSCCEEETTS--EEESSHHHHHHHHHHHHHHHTSTTSSCTSHHCCSEEEEEEEEEEEETTTTTCEEEEEEEEEEEEEEECCCHHHHS CS
     Kinesin 149 kkkkklkiredskkgevyvkgltevevksaeevlellekgeknrkvaetklneeSSRSHavftitleqknlkeeteekvkisklnLvDLAGsErasktg 247
                  ++ +l +red+  g vyv+  t+v ++++   + ++++g+++ ++++t+ln++SSRSHav                   ++kl+++DLAGsEr+++t 
  KOO23342.1 259 GESASLALREDPACG-VYVHRATTVPIETVAAGVAIIQSGAARLHFSSTQLNRHSSRSHAVAIFSAFPLA---------YHAKLTICDLAGSERVKRTA 347
                 55669********98.********************************************9876544443.........4689**************** PP

                 STCHHHHHHHHHHHHHHHHHHHHHHHHHHT......................CCTSTSCGGGSHHHHHTGGGHSSSSEEEEEEEE-TBGGGHHHHHHHH CS
     Kinesin 248 aaegerlkEaaniNkSLlaLgrvisaLaek......................kkskhipYRdSkLTrlLqdsLgGnsktlmivtvspssenleetlstl 324
                   +g++l+Ea++iN SL+aLg+vis Lae                        + +h+p+R+S LTrlLq+sLgGn++t ++vt+s ++++l+et stl
  KOO23342.1 348 V-SGTELNEAQQINVSLFALGNVISRLAELngavalppspaggvggrhrsqtPSPSHVPFRNSALTRLLQESLGGNCRTSLLVTISARTTDLAETRSTL 445
                 7.6888***********************99******************9988899******************************************* PP

                 HHHHHHCT CS
     Kinesin 325 kfaerake 332
                 +f+ ra +
  KOO23342.1 446 QFGRRAAR 453
                 *****976 PP

>> Microtub_bd  Microtubule binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.0   0.0   1.8e-18   1.7e-14      47     125 ..      63     146 ..      32     160 .. 0.79
   2 ?    1.6   0.0     0.026   2.3e+02     128     149 .]     231     252 ..     216     252 .. 0.87

  Alignments for each domain:
  == domain 1  score: 54.0 bits;  conditional E-value: 1.8e-18
                  TTTEEEE-SEEEECTTHCCCCCCCC.HHHHHHHHTT--EEEEEEES....................ST-HCHHHHHHHHHHCCT CS
  Microtub_bd  47 kkkkefsFdrvfeseseqeevfeei.sqlvqsaldgynvcifaygqTGsGKtyTmeg....eeeeagmipraveeifetiselk 125
                      +fsF++vf+ e+ ++ v+ ++ + lv s+ldgyn +++aygqTG GKtyT+++     ++ +g +pr+++++f  ++   
   KOO23342.1  63 ADGGRFSFNHVFDGEADNARVYRQLgQPLVRSVLDGYNGTLIAYGQTGTGKTYTLNEpgrlGTAAEGLMPRMLRALFADAQASA 146
                  45678*****************998456****************************9888889999***********9888774 PP

  == domain 2  score: 1.6 bits;  conditional E-value: 0.026
                  CCCEEEEEEEEEEESS-EEETT CS
  Microtub_bd 128 gwkyeielqfveiynekvqDlL 149
                  g   +i+lq+v++y +kv+DlL
   KOO23342.1 231 GCAISISLQYVQVYLDKVYDLL 252
                  566789***************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (707 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1314  (0.0732891); expected 358.6 (0.02)
Passed bias filter:                      403  (0.0224776); expected 358.6 (0.02)
Passed Vit filter:                        54  (0.00301188); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.65u 0.32s 00:00:00.97 Elapsed: 00:00:00.46
# Mc/sec: 4623.65
//
Query:       KOO23343.1  [L=278]
Description: hypothetical protein Ctob_002839 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
     0.0032   18.3   0.0     0.0051   17.7   0.0    1.3  1  2OG-FeII_Oxy_3  2OG-Fe(II) oxygenase superfamily


Domain annotation for each model (and alignments):
>> 2OG-FeII_Oxy_3  2OG-Fe(II) oxygenase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.7   0.0   2.9e-07    0.0051      13      94 ..     194     259 ..     183     261 .. 0.70

  Alignments for each domain:
  == domain 1  score: 17.7 bits;  conditional E-value: 2.9e-07
                     EEE-SS----TT.-.EEEEEEEEE....ET-B--EEE..........---TT-EEEEE-..B-TEEE--B.-SS-EEEEEEE CS
  2OG-FeII_Oxy_3  13 kpHvDnfekeegsgqrrltvllyLnekeseeGGelelyekdkeavkikpkkgrlvlFesdellpHevlpvtkggeRlsltgw 94 
                     ++H D        ++ ++ v   +    ++eGGel+++ +d    ++   ++r+v F+ +   +Hevlp  + g R+s+ ++
      KOO23343.1 194 SRHRDD-------KDATYQVATAF---GEYEGGELRVHGQD-GILDV-NTRDRFVRFDGRF--EHEVLPY-S-GLRYSVIFF 259
                     556662.......34556666666...479*******4444.44444.68*********54..5*****7.4.49**99876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (278 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       243  (0.0135535); expected 358.6 (0.02)
Passed bias filter:                      224  (0.0124937); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.22s 00:00:00.65 Elapsed: 00:00:00.39
# Mc/sec: 2118.74
//
Query:       KOO23344.1  [L=321]
Description: hypothetical protein Ctob_002838 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
     0.0024   17.7   0.0     0.0054   16.6   0.0    1.6  1  Tudor-knot    RNA binding activity-knot of a chromodomain
  ------ inclusion threshold ------
        5.7    5.3   8.0        7.8    4.9   8.0    1.1  1  Borrelia_P83  Borrelia P83/100 protein


Domain annotation for each model (and alignments):
>> Tudor-knot  RNA binding activity-knot of a chromodomain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   0.0     6e-07    0.0054      16      50 ..     102     153 ..      88     157 .. 0.81

  Alignments for each domain:
  == domain 1  score: 16.6 bits;  conditional E-value: 6e-07
                 EEEEEEEEEEETSSC.................EEEEEEETTS-CCC-EEEET CS
  Tudor-knot  16 lrkAeilsirekkgk.................yeYYVHYeefNkRlDeWVsa 50 
                  ++A +l+++  + +                   Y V Y+ + +R  eWV +
  KOO23344.1 102 CYEADVLQVQGADAPaatkkgtkkaepapaatRSYLVRYTKWPRRPEEWVAE 153
                 68899999998555555667789999999999******************86 PP

>> Borrelia_P83  Borrelia P83/100 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.9   8.0   0.00087       7.8     251     305 ..     196     248 ..     178     272 .. 0.78

  Alignments for each domain:
  == domain 1  score: 4.9 bits;  conditional E-value: 0.00087
  Borrelia_P83 251 reklqeaknlpepadvsskkedkkvaeekkreiekaqkeikkkdeeakkakdaka 305
                   +e  +e++ +p+pa  +++k +k  a +  +e e aq eik    eakka +++ 
    KOO23344.1 196 EELDEEDEPAPKPAPKQKQKDKKD-A-NLLKEQEAAQLEIKSPRAEAKKAMEDAR 248
                   344455677888888776665554.4.689999*****************99843 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (321 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1042  (0.0581181); expected 358.6 (0.02)
Passed bias filter:                      485  (0.0270511); expected 358.6 (0.02)
Passed Vit filter:                        55  (0.00306766); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.46u 0.25s 00:00:00.71 Elapsed: 00:00:00.38
# Mc/sec: 2564.84
//
Query:       KOO23345.1  [L=1045]
Description: filamin repeat domain containing protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    6.4e-46  155.4   0.0      1e-16   61.6   0.0    7.2  6  Filamin        Filamin/ABP280 repeat
      2e-07   31.3   0.0       0.26   11.6   0.0    4.4  4  Invasin_D3     Invasin, domain 3
    0.00078   19.0   0.3     0.0093   15.5   0.1    2.2  2  Neurexophilin  Neurexophilin
  ------ inclusion threshold ------
       0.12   12.3   0.9        5.1    7.1   0.0    3.4  4  Cadherin_5     Cadherin-like domain
        3.3    7.5   5.7        4.9    6.9   3.4    2.5  2  LRRNT          Leucine rich repeat N-terminal domain


Domain annotation for each model (and alignments):
>> Filamin  Filamin/ABP280 repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.6   0.0   2.9e-20     1e-16       2     103 .]       9     102 ..       8     102 .. 0.93
   2 !   19.0   0.0   5.1e-07    0.0018       3     103 .]     111     499 ..     108     499 .. 0.83
   3 !   29.3   0.0   3.3e-10   1.2e-06      24     102 ..     534     603 ..     517     604 .. 0.86
   4 !   13.2   0.0   3.3e-05      0.12       3      93 ..     613     710 ..     611     730 .. 0.75
   5 ?    4.6   0.0     0.015        55      73     102 ..     864     893 ..     785     894 .. 0.79
   6 !   16.6   0.0     3e-06     0.011       7      78 ..     907     982 ..     902     989 .. 0.82

  Alignments for each domain:
  == domain 1  score: 61.6 bits;  conditional E-value: 2.9e-20
                 CSTTSEEEESGGGTEEETTS-EEEEEEESSSTSCCCSTTS..EEEEE..ESSTS.....EEEEEEEE-SSSEEEEEE--SSSCEEEEEEEETTCE-TTS CS
     Filamin   2 vdpskskvnGpGieasvagesltFtvytkdakgeksevggdelqvrivtgsphgaatkssvkievvdnedgtytvsYtpeepgtyrvsvkldgkhiggs 100
                 +++  +kv+G G+  + + + ++ t+ + ++ g     ggd + v i  +++++      v ++vvdne+gty+vsY+p+ +g yr+s++l g++++gs
  KOO23345.1   9 TSATLCKVEGAGLSVAMVRQTASLTITAFTEMGSMQNRGGDTFFVAI--RGQSQ------VRAKVVDNENGTYHVSYKPSVSGSYRISISLFGEPVPGS 99 
                 56788********999*******************************..65544......5678*********************************** PP

                 SEE CS
     Filamin 101 Pfd 103
                 Pf+
  KOO23345.1 100 PFT 102
                 **6 PP

  == domain 2  score: 19.0 bits;  conditional E-value: 5.1e-07
                 STTSEEEESGGGTEEETTS-EEEEEEESSSTSCCCSTTS..EEEEE.....ESSTS........................................... CS
     Filamin   3 dpskskvnGpGieasvagesltFtvytkdakgeksevggdelqvriv...tgsphgaatk....................................... 59 
                 ++sk+ + G  +  ++   s +F+v  +da g+  + ++++l+v +v   ++sp  ++ +                                       
  KOO23345.1 111 EASKCELRGVSLTLAISRASNSFEVRFRDALGQ--TAHAEDLDVYVVplgMQSPGRHKRQpssaghetsrsssvkdasglapadaemtpdwtyvksrie 207
                 57888888888877788899*************..55568888888899955554443335666666678888888999999***************** PP

                 ................................................................................................... CS
     Filamin  60 ................................................................................................... 59 
                                                                                                                    
  KOO23345.1 208 vglkplilrescsldsqvlgqlppgllmmvldeyrtaagdvrahvapiddaaarlklldswhhpflqyaddcetsssvcglppsqpafpppvglqglpv 306
                 *************************************************************************************************** PP

                 ................................................................................................... CS
     Filamin  60 ................................................................................................... 59 
                                                                                                                    
  KOO23345.1 307 qqpaaecsssatpgskhqafeeeptrsplrhpepntgslsseemagllspsrslpltsqrapthrhpngwvtivkngeelvrrrerldtvkrqqhlqqw 405
                 ********************************************9999999999999999999999999999999998888888888888888777777 PP

                 .................................................EEEEEEEE-SSSEEEEEE--SSSCEEEEEEEETTC..E-TTSSEE CS
     Filamin  60 ...................................s.............svkievvdnedgtytvsYtpeepgtyrvsvkldgk..higgsPfd 103
                                                    s               +++ + + + +++++Y + ++g+y +++ l+ +  + +gsPf+
  KOO23345.1 406 arrqrtdksaaaqkndkkmearytrlknpfedelaSdpegicfafggvdPGTMHAHGQLHDVHRAHYSVGRVGKYLLHIGLRSQalPLPGSPFT 499
                 77777766666665555555555444444444333033344444444443344455555999*******************9865699****96 PP

  == domain 3  score: 29.3 bits;  conditional E-value: 3.3e-10
                 EEEEEESSSTSCCCSTTS..EEEEE..ESSTS.....EEEEEEEE-SSSEEEEEE--SSSCEEEEEEEETTCE-TTSSE CS
     Filamin  24 tFtvytkdakgeksevggdelqvrivtgsphgaatkssvkievvdnedgtytvsYtpeepgtyrvsvkldgkhiggsPf 102
                   ++++ d+ g+ +  gg +++++   +   ++    sv+++ +dn dg+yt +++ +++g ++v+v + +++i+gsP 
  KOO23345.1 534 RLSINASDKMGNLCIAGGAKVDCTC--S---NS----SVQCKSRDNLDGSYTFEWRSKMSGFFYVHVLVENQSIQGSPI 603
                 6789999999998888888888888..2...33....68899************************************7 PP

  == domain 4  score: 13.2 bits;  conditional E-value: 3.3e-05
                 STTSEEEESGGG.TEEETTS-EEEEEEESSSTSCCCSTTS.....EEEEE...........ESSTS.....EEEEEEEE-SSSEEEEEE--SSSCEEEE CS
     Filamin   3 dpskskvnGpGi.easvagesltFtvytkdakgeksevgg...delqvriv.........tgsphgaatkssvkievvdnedgtytvsYtpeepgtyrv 88 
                 d sk +++G+Gi ++  ag ++++     d++ + +  g      ++++i          t++ h        + + + ++ g + ++Y ++++g++++
  KOO23345.1 613 DLSKTVLTGSGIgKHIPAGVPVEIHLSFLDQYSNGCSPGSkheYAFGITILpersgaklsTATAHR------SEGKWSSEDTGEFSITYSATKAGNCEL 705
                 889*********5555999**999999999999987766664344446663554444443333332......23458888899**************** PP

                 EEEET CS
     Filamin  89 svkld 93 
                  v +d
  KOO23345.1 706 YVWCD 710
                 *9997 PP

  == domain 5  score: 4.6 bits;  conditional E-value: 0.015
                 EEEEEE--SSSCEEEEEEEETTCE-TTSSE CS
     Filamin  73 tytvsYtpeepgtyrvsvkldgkhiggsPf 102
                  y+ +    ++g ++ +v l g++i+gsP 
  KOO23345.1 864 IYESRHETRKSGHFYFNVLLYGEPIKGSPV 893
                 67778888999******************5 PP

  == domain 6  score: 16.6 bits;  conditional E-value: 3e-06
                 EEEESGGGTEEETTS-EEEEEEESSSTSCCCSTTS..EEEEE.......ESSTS.....EEEEEEEE-SSSEEEEEE CS
     Filamin   7 skvnGpGieasvagesltFtvytkdakgeksevggdelqvriv.....tgsphgaatkssvkievvdnedgtytvsY 78 
                  +v+Gp +++ +a e +t +v ++d   + +e+gg  ++ r+v     +++p+  +++ +  ++v+dn+dgty+v +
  KOO23345.1 907 TVVEGPKLHKLTADETYTCIVRLRDRFCNYLEKGGATVGARMVysrqgMQDPNMLNQQ-NNFANVEDNQDGTYNVCF 982
                 689*********************9988889********9997677776666665444.33468**********977 PP

>> Invasin_D3  Invasin, domain 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.4   0.1   0.00036       1.3      20      83 ..      28      94 ..      21     107 .. 0.74
   2 !   11.6   0.0   7.3e-05      0.26      24      86 ..     535     599 ..     531     604 .. 0.84
   3 ?   -0.4   0.0      0.41   1.5e+03      50      76 ..     679     705 ..     659     711 .. 0.71
   4 ?    3.5   0.0     0.024        87      15      64 ..     918     980 ..     912     983 .. 0.60

  Alignments for each domain:
  == domain 1  score: 9.4 bits;  conditional E-value: 0.00036
  Invasin_D3 20 ststltvtlkDangnp..vsglt..vtfsttsagtlsavtdngdGtytatLtattagtatitptvnGv 83
                +t+ lt+t+  + g     +g+t  v++  +s+ +  +v dn++Gty +  + + +g++ i+ ++ G+
  KOO23345.1 28 QTASLTITAFTEMGSMqnRGGDTffVAIRGQSQ-VRAKVVDNENGTYHVSYKPSVSGSYRISISLFGE 94
                567788888888887775666774444444433.345799**********************999883 PP

  == domain 2  score: 11.6 bits;  conditional E-value: 7.3e-05
  Invasin_D3  24 ltvtlkDangnp..vsgltvtfsttsagtlsavtdngdGtytatLtattagtatitptvnGvaia 86 
                 l++++ D+ gn   ++g++v  + +++ +  + +dn dG yt +  ++ +g   + + v++++i+
  KOO23345.1 535 LSINASDKMGNLciAGGAKVDCTCSNSSVQCKSRDNLDGSYTFEWRSKMSGFFYVHVLVENQSIQ 599
                 78999********556688*99988566666789*****************99999999986554 PP

  == domain 3  score: -0.4 bits;  conditional E-value: 0.41
  Invasin_D3  50 tlsavtdngdGtytatLtattagtati 76 
                 + +++++++ G  + t +at+ag+  +
  KOO23345.1 679 SEGKWSSEDTGEFSITYSATKAGNCEL 705
                 335666788899999999999999876 PP

  == domain 4  score: 3.5 bits;  conditional E-value: 0.024
  Invasin_D3  15 vAdGkststltvtlkDangnp..vsgltvtfstt..sag...........tlsavtdngdGtyta 64 
                 +Ad  +t t  v l+D + n    +g+tv   +    +g            + +v+dn+dGty +
  KOO23345.1 918 TAD--ETYTCIVRLRDRFCNYleKGGATVGARMVysRQGmqdpnmlnqqnNFANVEDNQDGTYNV 980
                 555..555667777888777754444555444334433333333333334667999*******75 PP

>> Neurexophilin  Neurexophilin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.1   2.6e-06    0.0093      74     108 ..      58      92 ..      47     105 .. 0.89
   2 ?    0.9   0.0     0.073   2.6e+02      80     102 ..     969     991 ..     962    1004 .. 0.81

  Alignments for each domain:
  == domain 1  score: 15.5 bits;  conditional E-value: 2.6e-06
  Neurexophilin  74 nllivGkvvDhgnGtfsvffrhnstGqgnvsvsLv 108
                    +  +  kvvD +nGt++v ++   +G  ++s+sL 
     KOO23345.1  58 QSQVRAKVVDNENGTYHVSYKPSVSGSYRISISLF 92 
                    567889***************************95 PP

  == domain 2  score: 0.9 bits;  conditional E-value: 0.073
  Neurexophilin  80 kvvDhgnGtfsvffrhnstGqgn 102
                     v D ++Gt++v f +++ G +n
     KOO23345.1 969 NVEDNQDGTYNVCFGLLAKGFSN 991
                    5789**************99888 PP

>> Cadherin_5  Cadherin-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.1   0.0    0.0014       5.1      20      77 ..      30      87 ..      16      91 .. 0.78
   2 ?   -0.3   0.0      0.31   1.1e+03      54      73 ..     566     585 ..     550     597 .. 0.78
   3 ?   -2.5   0.0       1.4   5.2e+03      47      76 ..     675     704 ..     668     706 .. 0.72
   4 ?    0.2   0.1      0.21   7.6e+02      47      64 ..     962     979 ..     959     981 .. 0.81

  Alignments for each domain:
  == domain 1  score: 7.1 bits;  conditional E-value: 0.0014
  Cadherin_5 20 taltitaaqLLanasDvdgdtLsvssltadaenGtvvdngdGtftftpeanynGevtl 77
                 +ltita + +  ++   gdt  v+   +++  ++vvdn++Gt+ +  +   +G+ ++
  KOO23345.1 30 ASLTITAFTEMGSMQNRGGDTFFVAIRGQSQVRAKVVDNENGTYHVSYKPSVSGSYRI 87
                477777777788888888999887777778889***********99888777777665 PP

  == domain 2  score: -0.3 bits;  conditional E-value: 0.31
  Cadherin_5  54 tvvdngdGtftftpeanynG 73 
                 +  dn dG++tf+  +  +G
  KOO23345.1 566 KSRDNLDGSYTFEWRSKMSG 585
                 55699*******98777766 PP

  == domain 3  score: -2.5 bits;  conditional E-value: 1.4
  Cadherin_5  47 tadaenGtvvdngdGtftftpeanynGevt 76 
                 ta+ ++G+  ++  G+f++t  a   G+ +
  KOO23345.1 675 TAHRSEGKWSSEDTGEFSITYSATKAGNCE 704
                 455667999999999999988887777765 PP

  == domain 4  score: 0.2 bits;  conditional E-value: 0.21
  Cadherin_5  47 tadaenGtvvdngdGtft 64 
                 +++++ ++v dn+dGt+ 
  KOO23345.1 962 NQQNNFANVEDNQDGTYN 979
                 567778999*******96 PP

>> LRRNT  Leucine rich repeat N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.9   3.4    0.0014       4.9       5      18 ..     555     568 ..     553     569 .. 0.87
   2 ?   -1.9   0.0      0.81   2.9e+03      11      17 ..     998    1004 ..     996    1004 .. 0.85

  Alignments for each domain:
  == domain 1  score: 6.9 bits;  conditional E-value: 0.0014
                 TSEEECCEEEETSS CS
       LRRNT   5 pChCsalvVnCser 18 
                  C+Cs+++V+C +r
  KOO23345.1 555 DCTCSNSSVQCKSR 568
                 6**********987 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 0.81
                  CEEEETS CS
       LRRNT   11 lvVnCse 17  
                  lv+nC++
  KOO23345.1  998 LVINCDK 1004
                  89***95 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1045 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       750  (0.0418317); expected 358.6 (0.02)
Passed bias filter:                      549  (0.0306208); expected 358.6 (0.02)
Passed Vit filter:                        55  (0.00306766); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.79u 0.26s 00:00:01.05 Elapsed: 00:00:00.44
# Mc/sec: 7063.58
//
Query:       KOO23346.1  [L=364]
Description: phosphoesterase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.6e-08   33.8   0.0    5.9e-08   33.1   0.0    1.4  1  Metallophos_2  Calcineurin-like phosphoesterase superfamily d
     0.0013   18.7   0.0     0.0025   17.8   0.0    1.5  1  MOSC           MOSC domain


Domain annotation for each model (and alignments):
>> Metallophos_2  Calcineurin-like phosphoesterase superfamily domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.1   0.0   6.6e-12   5.9e-08     117     163 ..      18      66 ..       2      68 .. 0.82

  Alignments for each domain:
  == domain 1  score: 33.1 bits;  conditional E-value: 6.6e-12
  Metallophos_2 117 egsdvvvcGHtHvpeveke..ggvlvvnPGsvgeprdgdpetyaildtd 163
                    +  dv+++GH+H++++ ++  +gv+++nPGs g++r+  p+++a+l++d
     KOO23346.1  18 KSGDVIISGHSHKAKLYRHvgTGVVFLNPGSCGPKRFNLPREFAVLECD 66 
                    3456**********9999966688***********************97 PP

>> MOSC  MOSC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.8   0.0   2.8e-07    0.0025      33     129 ..     223     311 ..     203     313 .. 0.79

  Alignments for each domain:
  == domain 1  score: 17.8 bits;  conditional E-value: 2.8e-07
                 GG-STTTT--SEEES-........-TTT-BTT-E...EEETT................EE----THHHH..HTTHHHHHHHHT---EEEEEEE-EEEET CS
        MOSC  33 veldpgrfreNivvggaaa.feEdtwkelrigdr..rfrlggacsRcqmvnvdqetgarprepcktlak..frrvdkrvkgkgrfGvylrvleegtvrv 126
                   + pg+freN++++ a+  +  ++ + lr+g +   +r++ ac+ c          +  +    +l++  fr ++    ++   G+++ vl++g v+v
  KOO23346.1 223 PGVVPGAFRENVLIDFAPGqWPPKSGSVLRLGGAdaALRITFACEACG---------KGAAYAGMKLEQlkFRGWE----AAAPRGMLATVLASGHVAV 308
                 45789*********997778***********88777999**9999995.........444444444444316****....55567************** PP

                 TS- CS
        MOSC 127 Gde 129
                 Gde
  KOO23346.1 309 GDE 311
                 **8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (364 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       276  (0.0153941); expected 358.6 (0.02)
Passed bias filter:                      241  (0.0134419); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.44u 0.22s 00:00:00.66 Elapsed: 00:00:00.40
# Mc/sec: 2752.44
//
Query:       KOO23347.1  [L=133]
Description: hypothetical protein Ctob_002848 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (133 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       294  (0.016398); expected 358.6 (0.02)
Passed bias filter:                      150  (0.00836633); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.21s 00:00:00.55 Elapsed: 00:00:00.35
# Mc/sec: 1123.74
//
Query:       KOO23348.1  [L=95]
Description: hypothetical protein Ctob_002849 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (95 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       214  (0.011936); expected 358.6 (0.02)
Passed bias filter:                      204  (0.0113782); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.19s 00:00:00.52 Elapsed: 00:00:00.34
# Mc/sec: 835.61
//
Query:       KOO23349.1  [L=791]
Description: bcs1 aaa-type [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    6.7e-16   58.9   0.2    2.4e-07   31.2   0.0    3.7  3  AAA           ATPase family associated with various cellular 
    5.2e-06   26.5   0.0    1.5e-05   25.0   0.0    1.8  1  AAA_5         AAA domain (dynein-related subfamily)
    3.4e-05   24.3   0.1     0.0008   19.8   0.0    2.5  2  AAA_16        AAA ATPase domain
     0.0011   18.8   0.0     0.0048   16.7   0.0    1.9  1  AAA_11        AAA domain
     0.0053   17.1   0.0      0.049   14.0   0.0    2.6  3  RNA_helicase  RNA helicase
     0.0064   16.2   0.7      0.049   13.4   0.0    2.4  2  AAA_30        AAA domain
     0.0091   16.3   0.2      0.034   14.4   0.0    2.0  2  AAA_28        AAA domain
     0.0092   16.3   0.1       0.11   12.7   0.0    2.6  2  AAA_22        AAA domain
     0.0099   16.2   1.1       0.24   11.7   0.0    2.6  2  AAA_19        AAA domain
  ------ inclusion threshold ------
      0.016   15.3   0.0      0.055   13.6   0.0    1.9  2  AAA_33        AAA domain
      0.025   13.6   0.0      0.048   12.6   0.0    1.4  1  AAA_6         Hydrolytic ATP binding site of dynein motor reg
      0.029   14.9   0.0       0.09   13.3   0.0    1.9  1  AAA_18        AAA domain
      0.036   13.8   0.0      0.072   12.8   0.0    1.4  1  RuvB_N        Holliday junction DNA helicase RuvB P-loop doma
       0.04   13.1   0.0      0.089   11.9   0.0    1.5  1  DUF815        Protein of unknown function (DUF815)
      0.053   13.4   0.0       0.11   12.4   0.0    1.4  1  Rad17         Rad17 P-loop domain
      0.068   12.7   0.0       0.16   11.4   0.0    1.6  1  AAA_7         P-loop containing dynein motor region
      0.069   13.1   0.0       0.14   12.2   0.0    1.5  1  TsaE          Threonylcarbamoyl adenosine biosynthesis protei
       0.14   11.5   0.0       0.43    9.9   0.0    1.8  1  IPT           Isopentenyl transferase


Domain annotation for each model (and alignments):
>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.2   0.0   2.4e-10   2.4e-07       1      42 [.     281     317 ..     281     368 .. 0.67
   2 !   22.5   0.0   1.2e-07   0.00012      87     130 ..     616     659 ..     603     661 .. 0.88
   3 ?   -0.0   0.0       1.1   1.1e+03      38      67 ..     736     765 ..     710     767 .. 0.73

  Alignments for each domain:
  == domain 1  score: 31.2 bits;  conditional E-value: 2.4e-10
                 EEEESSTTSSHHHHHHHHHHHHTHEEEEEETTTCSSSSTTHH CS
         AAA   1 vllyGppGtGKTllakavakelgvefleisgsellskyvges 42 
                 +ll+GppGtGKT+++ka+a+ +g++++++ ++++       +
  KOO23349.1 281 LLLHGPPGTGKTSMIKALAQYTGRSIVNVPLARIS-----TN 317
                 69*********************999999998887.....22 PP

  == domain 2  score: 22.5 bits;  conditional E-value: 1.2e-07
                 HHHHHHHHHTTTSSSTEEEEEEESSGGGSTHHHHS.TTSSEEEET CS
         AAA  87 nqLlteldgvkkkeskvivigatnrpdkldpallr.gRfdrkiei 130
                 + Ll++ldgv +   + iv+++tn+p+ ldpal+r gR+d+++ +
  KOO23349.1 616 AGLLNVLDGVVDT-PERIVVMTTNHPEILDPALIRpGRIDQRLLL 659
                 679*******997.559***********************99876 PP

  == domain 3  score: -0.0 bits;  conditional E-value: 1.1
                 STTHHHHHHHHHHHHHHHTSTSEEEEEETG CS
         AAA  38 yvgesekkirelfkeakekakpsilfiDEi 67 
                 +++ s+++ +e+ ++++ +a++ ++++DE+
  KOO23349.1 736 MIQVSARRPAEVSRQVSLSATQPVIIVDEV 765
                 56788888888888887777779******8 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.0   0.0   1.5e-08   1.5e-05       2      82 ..     281     360 ..     280     362 .. 0.84

  Alignments for each domain:
  == domain 1  score: 25.0 bits;  conditional E-value: 1.5e-08
                 EEEE--SSSSHHHHHHHGGGGBS--EEEEE--TT--HHHHH--B--.........--------G-SEEEEESGGG--HHHH CS
       AAA_5   2 vlLvGppGtgKselaerlaaalnreveyvqltrdtteedlkgrreikngttslvdsplvraaregeilvlDEveraesevl 82 
                 +lL GppGtgK+++++ la+ ++r+++ v l r  t ++l   +  +++  ++ d +  + + +  i+v+++v+ a++ v+
  KOO23349.1 281 LLLHGPPGTGKTSMIKALAQYTGRSIVNVPLARISTNQELMDIMF-DQQYLVMGDEVPIKLGFKDVIFVMEDVDAASKVVQ 360
                 89**************************************98876.56666666666666666888888888887777665 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.8   0.0   8.1e-07    0.0008      22      51 ..     274     305 ..     269     332 .. 0.76
   2 ?    1.2   0.1      0.43   4.3e+02      89     149 ..     707     770 ..     662     774 .. 0.62

  Alignments for each domain:
  == domain 1  score: 19.8 bits;  conditional E-value: 8.1e-07
      AAA_16  22 grp..elvllsGesGvGKsslvrellralekd 51 
                 g p    +ll+G++G+GK+s++++l+++  ++
  KOO23349.1 274 GYPhkLGLLLHGPPGTGKTSMIKALAQYTGRS 305
                 55566789******************644443 PP

  == domain 2  score: 1.2 bits;  conditional E-value: 0.43
      AAA_16  89 aesaeleawrekleealaavpelagaea......srllellkrllallsrderplvlvlDdlqwade 149
                 ++ a++e+ +++ +++++ v++l++++        r  ++++r ++l+++ ++  v+++D++   d+
  KOO23349.1 707 LTPAQVEQLSAEHDDVASMVAALEAKATgmiqvsARRPAEVSRQVSLSAT-QP--VIIVDEVKEDDD 770
                 33334444444444444455555555558888999999999999988888.65..999999866655 PP

>> AAA_11  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.0   4.8e-06    0.0048      20     141 ..     281     488 ..     269     504 .. 0.67

  Alignments for each domain:
  == domain 1  score: 16.7 bits;  conditional E-value: 4.8e-06
      AAA_11  20 tliqGPPGtgKTktivellsqll.......................................................................sr... 44 
                  l++GPPGtgKT++i +l ++                                                                          +   
  KOO23349.1 281 LLLHGPPGTGKTSMIKALAQYTGrsivnvplaristnqelmdimfdqqylvmgdevpiklgfkdvifvmedvdaaskvvqrrdgktnfgggkieLHada 379
                 589***********9999998877778888888877777777777777777777777777777777777666666666655555555444444400444 PP

      AAA_11  45 .......rkseeeksakpriLvCapSNaAvDellerllrglldsegekykpkivRvgnee......eriseavksvsleekvekrlekeekaqlakeis 130
                        +      +a+p +L+ ++ +  v el++ ll++  + + +  +p+++R +++e      + +s++  +  le+k  +++++  +aq+++e  
  KOO23349.1 380 plnpdekSMVGGVLEATPWHLLLGSDDPNVQELVDELLEKSERLKAAALSPDTMRAVAAElrvpkpPPPSDDKDRAELEKKSPAERAMA-TAQMVHEAM 477
                 44444323366677777777777777777777777777766777777777777777777777776655666777777777776666665.555555555 PP

      AAA_11 131 keleklakelr 141
                 +++ + +++++
  KOO23349.1 478 SQRCERHETID 488
                 55555555554 PP

>> RNA_helicase  RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.0         5     5e+03      37      82 ..     133     178 ..     123     184 .. 0.77
   2 !   14.0   0.0   4.9e-05     0.049       2      56 ..     282     333 ..     281     343 .. 0.74
   3 ?   -2.7   0.1       7.9   7.8e+03      49      64 ..     756     771 ..     752     774 .. 0.86

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 5
  RNA_helicase  37 rnpeddfwdgYtgqevvvidDfgqvkdeenpsdlaelirlvsstpy 82 
                   r+p ++ w   t+++v+   +++ +++e ++ + ae+  +++ +++
    KOO23349.1 133 RKPPKNRWTAITSPKVHGKVELMVSESEHDKGEKAEKTTIINVYKL 178
                   7788888999999999999999988877455588888888888876 PP

  == domain 2  score: 14.0 bits;  conditional E-value: 4.9e-05
  RNA_helicase   2 wlyGpsgeGKStlakeLakallkklklkkkdsvysrnpeddfwdgYtgqevvvid 56 
                   +l+Gp+g+GK++++k La+   +++ +    ++   +++++ +d   +q+++v+ 
    KOO23349.1 282 LLHGPPGTGKTSMIKALAQYTGRSIVNVPLARI---STNQELMDIMFDQQYLVMG 333
                   79*****************99988844443444...5577777766666665554 PP

  == domain 3  score: -2.7 bits;  conditional E-value: 7.9
  RNA_helicase  49 gqevvvidDfgqvkde 64 
                    q+v+++d+++++ de
    KOO23349.1 756 TQPVIIVDEVKEDDDE 771
                   699******9998876 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.4   0.0   4.9e-05     0.049      22      42 ..     282     302 ..     276     317 .. 0.85
   2 ?   -0.0   0.2      0.62   6.2e+02      55      97 ..     708     765 ..     686     769 .. 0.69

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 4.9e-05
      AAA_30  22 vltGpAGtGKttalkalreaw 42 
                 +l+Gp+GtGKt ++kal++  
  KOO23349.1 282 LLHGPPGTGKTSMIKALAQYT 302
                 789**************9875 PP

  == domain 2  score: -0.0 bits;  conditional E-value: 0.62
      AAA_30  55 tgkaAkvLaeelgieastiakllkrlk..............grarlepg.tllivDEa 97 
                 t ++ ++L++e +  as +a l  + +              ++++l++   ++ivDE+
  KOO23349.1 708 TPAQVEQLSAEHDDVASMVAALEAKATgmiqvsarrpaevsRQVSLSATqPVIIVDEV 765
                 55566667666666666666666555578888888888888556676666999***96 PP

>> AAA_28  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.4   0.0   3.4e-05     0.034       4      28 ..     283     308 ..     281     331 .. 0.82
   2 ?   -2.6   0.3       5.9   5.9e+03      43      69 ..     458     483 ..     449     500 .. 0.61

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 3.4e-05
      AAA_28   4 itGgestGKTtlleaLaar.gypvvp 28 
                 + G+++tGKT++++aLa+  g ++v 
  KOO23349.1 283 LHGPPGTGKTSMIKALAQYtGRSIVN 308
                 78***************977887774 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 5.9
      AAA_28  43 edalpwvedllafaervleeqleeeaa 69 
                 e+++p+ e+++a a++v e+  +++++
  KOO23349.1 458 EKKSPA-ERAMATAQMVHEAMSQRCER 483
                 445555.46666666666655555443 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.7   0.0   0.00011      0.11       8      27 ..     281     300 ..     276     324 .. 0.82
   2 ?   -0.3   0.1       1.2   1.2e+03      84     100 ..     749     765 ..     711     773 .. 0.75

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 0.00011
      AAA_22   8 lvvtGesGtGKTtllrrlle 27 
                 l+++G++GtGKT  ++ l++
  KOO23349.1 281 LLLHGPPGTGKTSMIKALAQ 300
                 89**************9987 PP

  == domain 2  score: -0.3 bits;  conditional E-value: 1.2
      AAA_22  84 qalraravielliiDEa 100
                 ++++  a+++++i+DE+
  KOO23349.1 749 RQVSLSATQPVIIVDEV 765
                 4444444479******8 PP

>> AAA_19  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.7   0.0   0.00024      0.24      11      34 ..     279     302 ..     269     318 .. 0.76
   2 ?    2.3   0.0      0.19   1.9e+02      90     115 ..     728     769 ..     681     776 .. 0.66

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.00024
      AAA_19  11 kvllvtaGpGtGKTrvlkhivall 34 
                   ll+ ++pGtGKT ++k+  ++ 
  KOO23349.1 279 LGLLLHGPPGTGKTSMIKALAQYT 302
                 44788999*********9988765 PP

  == domain 2  score: 2.3 bits;  conditional E-value: 0.19
      AAA_19  90 lle...............eaeeekklqeee.llivDEfqdvd 115
                 +le               e +++  l +++ ++ivDE+ + d
  KOO23349.1 728 ALEakatgmiqvsarrpaEVSRQVSLSATQpVIIVDEVKEDD 769
                 3334444444466777776777888888889******98766 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.0   5.5e-05     0.055       3      31 ..     282     310 ..     281     332 .. 0.79
   2 ?   -3.0   0.0       7.3   7.3e+03      25      50 ..     425     453 ..     412     495 .. 0.44

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 5.5e-05
      AAA_33   3 llvGlpGsGKstlaerllkklgavllssd 31 
                 ll+G+pG+GK+  ++ l++ +g  +++ +
  KOO23349.1 282 LLHGPPGTGKTSMIKALAQYTGRSIVNVP 310
                 79****************99995555554 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 7.3
      AAA_33  25 avllssdtlrrrlfg...tdqqsktdytr 50 
                 a  ls dt+r   ++    ++++++d ++
  KOO23349.1 425 AAALSPDTMRAVAAElrvPKPPPPSDDKD 453
                 66666666555333322222222222222 PP

>> AAA_6  Hydrolytic ATP binding site of dynein motor region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   4.9e-05     0.048      26      63 ..     272     309 ..     259     325 .. 0.83

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 4.9e-05
       AAA_6  26 tqAlklklggapaGpagtGKtEtvkdLakalakqvvvf 63 
                 +q +  klg  ++Gp gtGKt  +k La+  ++ +v +
  KOO23349.1 272 VQGYPHKLGLLLHGPPGTGKTSMIKALAQYTGRSIVNV 309
                 567778899999*******************9998765 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.0     9e-05      0.09       2      39 ..     282     331 ..     281     372 .. 0.76

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 9e-05
      AAA_18   2 lltGtpGvGKttlakeLskrlgf............gvnlrdvakenglll 39 
                 ll G+pG+GKt++ k+L++ +g              ++l+d+ ++ ++l 
  KOO23349.1 282 LLHGPPGTGKTSMIKALAQYTGRsivnvplaristNQELMDIMFDQQYLV 331
                 588**************887744466666666666666666666665555 PP

>> RuvB_N  Holliday junction DNA helicase RuvB P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0   7.2e-05     0.072      36      80 ..     281     325 ..     272     352 .. 0.85

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 7.2e-05
      RuvB_N  36 vllyGpPGlGkttlakiiakelgvklkitsgPvlekagdlaallt 80 
                 +ll+GpPG Gkt++ k +a+  g ++       ++ +++l+ ++ 
  KOO23349.1 281 LLLHGPPGTGKTSMIKALAQYTGRSIVNVPLARISTNQELMDIMF 325
                 69******************9999998888888888888877764 PP

>> DUF815  Protein of unknown function (DUF815)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0     9e-05     0.089      55     103 ..     280     325 ..     259     337 .. 0.73

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 9e-05
      DUF815  55 nvLLwGarGtGKSslvkallneyaeegLrlievekedlkelpklvellr 103
                  +LL G  GtGK s++kal + + +    +++v   ++++ ++l++++ 
  KOO23349.1 280 GLLLHGPPGTGKTSMIKALAQYTGR---SIVNVPLARISTNQELMDIMF 325
                 5799**************9875544...466677677777777766665 PP

>> Rad17  Rad17 P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   0.00011      0.11      44      73 ..     276     306 ..     251     320 .. 0.84

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 0.00011
       Rad17  44 kkri.LLisGPsGCgkstvvkvLskelgikl 73 
                 ++++ LL+ GP+G gk+ ++k L++  g ++
  KOO23349.1 276 PHKLgLLLHGPPGTGKTSMIKALAQYTGRSI 306
                 5664399*****************9988776 PP

>> AAA_7  P-loop containing dynein motor region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   0.00016      0.16      32      76 ..     277     318 ..     270     330 .. 0.72

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00016
       AAA_7  32 nkkpvllvGptGtGKtviikdllkkldkekylsltinfsaqtsan 76 
                 +k  +ll Gp GtGKt++ik l +       +++++ +    + +
  KOO23349.1 277 HKLGLLLHGPPGTGKTSMIKALAQYTG---RSIVNVPLARISTNQ 318
                 566789**************9877655...444455555555555 PP

>> TsaE  Threonylcarbamoyl adenosine biosynthesis protein TsaE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   0.00014      0.14      21      49 ..     272     308 ..     250     325 .. 0.74

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 0.00014
                 E........EEEEESTTSSHHHHHHHHHHHTT----- CS
        TsaE  21 v........ilLeGdLGaGKTtlvrglakalgveevk 49 
                 v        +lL+G+ G+GKT ++++la+  g + v+
  KOO23349.1 272 VqgyphklgLLLHGPPGTGKTSMIKALAQYTGRSIVN 308
                 1333444469*******************99876554 PP

>> IPT  Isopentenyl transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   0.0   0.00043      0.43       5      36 ..     282     315 ..     279     322 .. 0.81

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.00043
         IPT   5 lifGatttGKtaeaiklaketgapviv..lDRvq 36 
                 l++G+ +tGKt++  +la+ tg +++   l R+ 
  KOO23349.1 282 LLHGPPGTGKTSMIKALAQYTGRSIVNvpLARIS 315
                 789*********************9862255665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (791 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       800  (0.0446204); expected 358.6 (0.02)
Passed bias filter:                      657  (0.0366445); expected 358.6 (0.02)
Passed Vit filter:                       113  (0.00630264); expected 17.9 (0.001)
Passed Fwd filter:                        19  (0.00105974); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              18  [number of targets reported over threshold]
# CPU time: 0.68u 0.32s 00:00:01.00 Elapsed: 00:00:00.41
# Mc/sec: 5833.51
//
Query:       KOO23350.1  [L=156]
Description: hypothetical protein Ctob_002845 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
     0.0012   19.1   9.7     0.0023   18.1   9.7    1.5  1  IBR       IBR domain, a half RING-finger domain


Domain annotation for each model (and alignments):
>> IBR  IBR domain, a half RING-finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.1   9.7   1.3e-07    0.0023      16      55 ..       5      42 ..       2      52 .. 0.82

  Alignments for each domain:
  == domain 1  score: 18.1 bits;  conditional E-value: 1.3e-07
         IBR 16 pnlkwCprpdCeaiieksegcksvtCskCgfefCfnCkke 55
                +++k Cp   C+     + gc +++C++C  e+C+ C++ 
  KOO23350.1  5 QTTKPCP--SCGVRTTRTMGCMHISCTQCALEWCWGCGQM 42
                56899**..9**88888888*****************976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (156 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       672  (0.0374812); expected 358.6 (0.02)
Passed bias filter:                      332  (0.0185175); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.27s 00:00:00.65 Elapsed: 00:00:00.41
# Mc/sec: 1128.69
//
Query:       KOO23351.1  [L=528]
Description: pre-mRNA-splicing factor slu7 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.9e-73  247.6  14.0    1.9e-73  247.6  14.0    1.5  2  Slu7       Pre-mRNA splicing Prp18-interacting factor
  ------ inclusion threshold ------
      0.084   12.6   1.9       0.13   12.0   0.5    2.0  2  zf-CCHC_4  Zinc knuckle
        1.2    8.9   6.8        1.1    9.0   1.9    2.5  2  zf-CCHC_5  GAG-polyprotein viral zinc-finger
        1.6    9.0   3.8        0.9    9.7   1.6    1.8  2  zf-CCHC    Zinc knuckle


Domain annotation for each model (and alignments):
>> Slu7  Pre-mRNA splicing Prp18-interacting factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  247.6  14.0   4.2e-77   1.9e-73       2     266 ..     134     429 ..     133     434 .. 0.85
   2 ?   -4.0   0.3       2.2   9.8e+03      40      40 ..     488     488 ..     462     514 .. 0.41

  Alignments for each domain:
  == domain 1  score: 247.6 bits;  conditional E-value: 4.2e-77
        Slu7   2 dydakRDrwngYdpeeykkvveeyekieeerkklkeeelkkkaaeekekakkkeeea............................edsdsdedeeedkd 72 
                 dy +kRD w  Ydp++++ ++e +ek  e r k++++++  ++a+++++++++++e+                            e sd+d+d++++  
  KOO23351.1 134 DYAGKRDHWAQYDPSDHTLMIEAHEKEMEVRIKQHKQTQVGQLAAKEKEREERRAERrrkrqakkaadggeggggadddeegeegEGSDTDADTDDEAA 232
                 8************************99999988888877766655555555554444566778889999******999988765533333333333333 PP

        Slu7  73 d.ed.edkyaeeadmag.ekld....eksritvrnLRiReDtAkYLlnldlnsakYDPKtRsmrdnplketskkekklfagdnfvrasgeakefaklql 164
                   +d e k ae+ + +  +k++       ++tvrnLRiReDtAkYLlnld+nsa+YDPKt smr+npl++t+++    f   n  r sg+a e+a lql
  KOO23351.1 233 GlDDpEGKLAESEQLNVgTKMNanknGGAKMTVRNLRIREDTAKYLLNLDVNSAFYDPKTHSMRENPLPGTAHD----FVPYNEERRSGQARELAALQL 327
                 343356666666665553566444568899***************************************77655....7778889************** PP

        Slu7 165 fAweaeekGedvhlqAnPtkaellakefkekkeklkeekkksilekYggeehlkakpkelllaqteayveysesgrvikgkekakakSkYeeDvlinnH 263
                 +  ea++kG+++hl+A+Pt+ el++k ++ekk+kl+e+k +++lekYgg+ehl+++p+ell+aqte+y+ey++sg + +g+eka+++SkYeeDv+  nH
  KOO23351.1 328 YELEASSKGSSIHLNADPTSIELMNKIYREKKAKLQETKVNRVLEKYGGAEHLEKPPDELLFAQTEEYTEYTRSGALKHGREKAIVRSKYEEDVHVFNH 426
                 *************************************************************************************************** PP

        Slu7 264 tsV 266
                  +V
  KOO23351.1 427 MAV 429
                 988 PP

  == domain 2  score: -4.0 bits;  conditional E-value: 2.2
        Slu7  40 l 40 
                 +
  KOO23351.1 488 T 488
                 1 PP

>> zf-CCHC_4  Zinc knuckle
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.5   2.9e-05      0.13      33      47 ..      92     106 ..      89     108 .. 0.92
   2 ?   -1.6   0.0      0.51   2.3e+03      16      28 ..     406     418 ..     404     419 .. 0.87

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 2.9e-05
   zf-CCHC_4  33 fCyiCgvlGHsdkrC 47 
                 +C++Cg ++H +k+C
  KOO23351.1  92 ACTNCGAMTHAAKDC 106
                 7************** PP

  == domain 2  score: -1.6 bits;  conditional E-value: 0.51
   zf-CCHC_4  16 esGeeatiefkYE 28 
                  ++e+a ++ kYE
  KOO23351.1 406 HGREKAIVRSKYE 418
                 6789********9 PP

>> zf-CCHC_5  GAG-polyprotein viral zinc-finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.0   1.9   0.00026       1.1       1      26 [.      89     114 ..      89     120 .. 0.86
   2 ?    1.8   0.2     0.045     2e+02       9      16 ..     137     144 ..     136     145 .. 0.90

  Alignments for each domain:
  == domain 1  score: 9.0 bits;  conditional E-value: 0.00026
                 ---B-TTT-SSBS-TTT---SEEGGG CS
   zf-CCHC_5   1 ppglCpRCkkgkHwardChskfdknG 26 
                 + g C  C+  +H a+dC  +  k G
  KOO23351.1  89 RKGACTNCGAMTHAAKDCVERPRKKG 114
                 5789**************88877766 PP

  == domain 2  score: 1.8 bits;  conditional E-value: 0.045
                 -SSBS-TT CS
   zf-CCHC_5   9 kkgkHwar 16 
                 +k+ Hwa+
  KOO23351.1 137 GKRDHWAQ 144
                 8*****95 PP

>> zf-CCHC  Zinc knuckle
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   1.6    0.0002       0.9       2      16 ..      92     106 ..      91     106 .. 0.95
   2 ?   -2.7   0.0       1.7   7.5e+03       7      13 ..     137     143 ..     137     144 .. 0.84

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 0.0002
                 CTSSSSSSSSTTTTS CS
     zf-CCHC   2 kCynCGepGHiardC 16 
                 +C nCG + H a+dC
  KOO23351.1  92 ACTNCGAMTHAAKDC 106
                 7************** PP

  == domain 2  score: -2.7 bits;  conditional E-value: 1.7
                 SSSSSTT CS
     zf-CCHC   7 GepGHia 13 
                 G+  H+a
  KOO23351.1 137 GKRDHWA 143
                 7889**9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (528 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1723  (0.0961013); expected 358.6 (0.02)
Passed bias filter:                      759  (0.0423336); expected 358.6 (0.02)
Passed Vit filter:                        74  (0.00412739); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.61u 0.30s 00:00:00.90 Elapsed: 00:00:00.42
# Mc/sec: 3779.87
//
Query:       KOO23352.1  [L=177]
Description: ferredoxin 1-like protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.1e-07   29.3   1.5    8.5e-07   28.8   1.5    1.3  1  Fer2      2Fe-2S iron-sulfur cluster binding domain
  ------ inclusion threshold ------
      0.044   13.4   0.9       0.15   11.6   0.2    2.3  2  MCR       Magnetochrome domain


Domain annotation for each model (and alignments):
>> Fer2  2Fe-2S iron-sulfur cluster binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.8   1.5   9.5e-11   8.5e-07      27      77 ..      91     149 ..      64     150 .. 0.84

  Alignments for each domain:
  == domain 1  score: 28.8 bits;  conditional E-value: 9.5e-11
                 TTTTSTTSSSSSS.SSTTEEEEEESCE.CTT.SSSSTHHHHHTTEE.....EEGGGSEE CS
        Fer2  27 ggidipysCgggg.CgtClvevlegev.qsd.etelegeeldegkl.....rlaCqtiv 77 
                  +++++ +C+++  C+tC+v + ++++   d + e e+++lde+       rl Cq+i+
  KOO23352.1  91 AKLALEGACEASLaCSTCHVIISSEHYdLLDeAIEEEEDMLDEATCltatsRLGCQIIL 149
                 3789999*****9**************966647777888887776699********986 PP

>> MCR  Magnetochrome domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.0      0.26   2.3e+03       4      13 ..      32      41 ..      32      41 .. 0.86
   2 ?   11.6   0.2   1.7e-05      0.15      19      28 ..     104     113 ..     101     115 .. 0.86

  Alignments for each domain:
  == domain 1  score: -1.7 bits;  conditional E-value: 0.26
                -TT---SS-- CS
         MCR  4 lagapaPHtD 13
                +a ap  H+D
  KOO23352.1 32 RASAPVLHGD 41
                5889999*99 PP

  == domain 2  score: 11.6 bits;  conditional E-value: 1.7e-05
                 -GGGT--BSS CS
         MCR  19 nCtkCHqIig 28 
                 +C++CH+Ii 
  KOO23352.1 104 ACSTCHVIIS 113
                 8*******96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (177 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       462  (0.0257683); expected 358.6 (0.02)
Passed bias filter:                      378  (0.0210832); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.42u 0.25s 00:00:00.67 Elapsed: 00:00:00.42
# Mc/sec: 1272.18
//
Query:       KOO23353.1  [L=301]
Description: hypothetical protein Ctob_002842 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (301 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       386  (0.0215294); expected 358.6 (0.02)
Passed bias filter:                      284  (0.0158403); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.41u 0.24s 00:00:00.64 Elapsed: 00:00:00.39
# Mc/sec: 2343.51
//
Query:       KOO23354.1  [L=338]
Description: mitogen-activated protein kinase kinase 6 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.3e-47  161.1   0.0      4e-47  160.8   0.0    1.1  1  Pkinase         Protein kinase domain
    2.6e-34  118.7   0.0    3.3e-34  118.3   0.0    1.1  1  Pkinase_Tyr     Protein tyrosine kinase
    6.9e-06   25.1   0.0    9.9e-06   24.6   0.0    1.1  1  Pkinase_fungal  Fungal protein kinase
    0.00016   21.1   0.0    0.00027   20.4   0.0    1.3  1  Kinase-like     Kinase-like
  ------ inclusion threshold ------
      0.013   14.5   0.0      0.016   14.2   0.0    1.1  1  Haspin_kinase   Haspin like kinase domain
      0.052   12.6   0.0      0.076   12.1   0.0    1.1  1  Seadorna_VP7    Seadornavirus VP7
        1.6    8.8  10.4        2.7    8.0  10.4    1.3  1  Herpes_capsid   Gammaherpesvirus capsid protein


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  160.8   0.0   1.6e-50     4e-47      45     264 .]       2     222 ..       1     222 [. 0.87

  Alignments for each domain:
  == domain 1  score: 160.8 bits;  conditional E-value: 1.6e-50
                 HHHHHHHHHHHSCTTB--EEEEEEESSEEEEEEE--TTEBHHHHHH.....HHSS--HHHHHHHHHHHHHHHHHHH.HTTEE-SS-SGGGEEEETTTEE CS
     Pkinase  45 vlrEikilkklkhpnivrlyevfeekdelylvleyveggeladlle.....rkgslseeeakkiakqilegleylH.skgiiHrDlKpeNiLidekgel 137
                 +l+Eiki+ + ++++++ +y++f ++ ++yl ley+++g+l+ ll+       + ++e    +++ qil+gl ylH +++ +HrDlKp+N+L+d+ g +
  KOO23354.1   2 ILNEIKIVSNAQSNHLISFYDAFFHDGSIYLALEYMDCGSLEGLLHaakstPAQLVPEGVSASVLFQILRGLTYLHhEQKAVHRDLKPANVLLDSAGCV 100
                 689*************************************9999997766555568888999*************96778******************* PP

                 EE-SGTTSEESSSSCS..BCTTTSCGGGS-HHHHTTSCBSHHHHHHHHHHHHHHHHHSS-STTTSSHHHHHHHHHHT.HHHHHHHCT.SHH...H.HHT CS
     Pkinase 138 KitDFGlakelesssk..ltsfvgtseYlAPEvlkeneyskkvDvWslGvilyelltgkppfsgekgkekvekeldq.lekilkilg.etkeklp.eas 231
                 K++DFG+ak+l s+    + ++vgt  Y++PE l++ +y+ ++DvWs+G+i +e   g+ pf+           ++  +e +  i++ ++  ++p  ++
  KOO23354.1 101 KLSDFGIAKQLGSGMYaqAGTQVGTVAYMSPERLRGDPYGFASDVWSVGLIALETALGTYPFP----------LCRSyFELVKTIVEgPVPSEYPdVQE 189
                 *************98777899******************************************..........22221222223444455555551556 PP

                 TS-HHHHHHHHHHT-SSGCCSTTHHHHHTSGGG CS
     Pkinase 232 eiseeakdllkkllkkdpkkRltaeellqhpyl 264
                  ++ + ++l++ +l+k p++R+ +++l + p++
  KOO23354.1 190 RVPLDELQLVHACLQKAPNERPDVRDLTRFPFF 222
                 679999********************9999987 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  118.3   0.0   1.3e-37   3.3e-34      48     257 ..       2     218 ..       1     219 [. 0.88

  Alignments for each domain:
  == domain 1  score: 118.3 bits;  conditional E-value: 1.3e-37
                  HHHHHHHHHTS-BTTB--EEEEEESSSSEEEEEE--TTEBHHHHHHHTCTTTSBH...HHHHHHHHHHHHHHHHHHH.TTEEEST-SGGGEEEEETTE CS
  Pkinase_Tyr  48 lleeakimkklkhpnivkllgvctkeepllivteyvkgGdLlkfLrkkekekltl...kdllsfalqvAkGmeyLes.kklvHrdlaarNvLlsenkv 141
                  +l+e+ki ++ + +++++++ +  +++++++ +ey++ G+L+  L++ ++++ +l       s+ +q+ +G+ yL++ +k vHrdl   NvLl++  +
   KOO23354.1   2 ILNEIKIVSNAQSNHLISFYDAFFHDGSIYLALEYMDCGSLEGLLHAAKSTPAQLvpeGVSASVLFQILRGLTYLHHeQKAVHRDLKPANVLLDSAGC 99 
                  689*******************************************9965554441114468899**********86267****************** PP

                  EEE-STTTHEETTTSSEEEETTSSTSGGGGS-HHHHHHSEEEHHHHHHHHHHHHHHHHTTSSGTTTTS.HHHHHHHHHHTTEES-BBTTSBHHH.... CS
  Pkinase_Tyr 142 vkisDfGLardiekddeyvkkeeaklpvkWmapEslkekkftsksDvWsfGvllwEiftlgespypgl.kneevleklkegkrlekpekcpeel.... 234
                  vk+sDfG+a+++  +  y +++++   v +m+pE l+   +  +sDvWs G +  E +  g  p+p + +  e+++++ eg   ++  +++e++    
   KOO23354.1 100 VKLSDFGIAKQL-GSGMYAQAGTQVGTVAYMSPERLRGDPYGFASDVWSVGLIALETAL-GTYPFPLCrSYFELVKTIVEGPVPSEYPDVQERVplde 195
                  ************.888899999999*******************************876.********8899******99988776666666553322 PP

                  HHHHHHHT-SSGGGS--HHHHHH CS
  Pkinase_Tyr 235 yelmkkcweedpeeRptfselve 257
                   +l++ c+++ p+eRp+ ++l++
   KOO23354.1 196 LQLVHACLQKAPNERPDVRDLTR 218
                  699**************999875 PP

>> Pkinase_fungal  Fungal protein kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.6   0.0   3.9e-09   9.9e-06     311     397 ..      65     145 ..      61     153 .. 0.89

  Alignments for each domain:
  == domain 1  score: 24.6 bits;  conditional E-value: 3.9e-09
  Pkinase_fungal 311 alrDaIkghrsLflkagiLHrDiSenNilitdskkegerkglLiDLDlakelsddssesgarertGTleFmaievlkgeeHsyrhDL 397
                     +l + ++g+  L+++++ +HrD    N+l+      +  +  L+D+ +ak+l+   + ++a++++GT+++m+ e l+g    +  D+
      KOO23354.1  65 VLFQILRGLTYLHHEQKAVHRDLKPANVLLD-----SAGCVKLSDFGIAKQLGS-GMYAQAGTQVGTVAYMSPERLRGDPYGFASDV 145
                     677788999*********************9.....78999************7.788899***************98767776665 PP

>> Kinase-like  Kinase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.4   0.0     1e-07   0.00027     125     252 ..      40     164 ..      13     180 .. 0.77

  Alignments for each domain:
  == domain 1  score: 20.4 bits;  conditional E-value: 1e-07
  Kinase-like 125 eilnkvlqkrsethkkl..etiarlllTlqlirlaanLqakg.lvhgkftvdnllldekgglmlggftaLvragtkvvl.seve...kgfaPpEllgs 215
                  + l  +l+  ++t ++l  e ++  +l  q++r   +L++++  vh ++++ n+lld  g ++l +f+   + g  + + + ++   +++  pE l  
   KOO23354.1  40 GSLEGLLHAAKSTPAQLvpEGVSASVL-FQILRGLTYLHHEQkAVHRDLKPANVLLDSAGCVKLSDFGIAKQLGSGMYAqAGTQvgtVAYMSPERLRG 136
                  556666666666644441144566666.899*******998758***********************9988887766643333345777777774432 PP

  Kinase-like 216 rggytrknktkmthkldaWqlGlviyriwclklPltl 252
                             + ++ d+W +Gl ++  +  + P+ l
   KOO23354.1 137 ---------DPYGFASDVWSVGLIALETALGTYPFPL 164
                  .........3688999********9998888888766 PP

>> Haspin_kinase  Haspin like kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   0.0   6.1e-06     0.016     209     255 ..      63     109 ..      11     129 .. 0.89

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 6.1e-06
  Haspin_kinase 209 lsifwqivkiLyvaEtkfeFEHRdLhldniLvdknlnvtlidlklsR 255
                     s+++qi+  L     + +  HRdL+  n+L+d++++v l d+ +++
     KOO23354.1  63 ASVLFQILRGLTYLHHEQKAVHRDLKPANVLLDSAGCVKLSDFGIAK 109
                    58999999999999999999***********************8876 PP

>> Seadorna_VP7  Seadornavirus VP7
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0     3e-05     0.076     151     186 ..      70     104 ..      60     110 .. 0.86

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 3e-05
  Seadorna_VP7 151 lkdLmdfhsestnllhGDcnpenlmcDknGylklvD 186
                   l+ L  +h  +++ +h D +p n++ D+ G +kl D
    KOO23354.1  70 LRGLTYLH-HEQKAVHRDLKPANVLLDSAGCVKLSD 104
                   67788899.77899********************98 PP

>> Herpes_capsid  Gammaherpesvirus capsid protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.0  10.4    0.0011       2.7     103     157 ..     247     301 ..     222     310 .. 0.74

  Alignments for each domain:
  == domain 1  score: 8.0 bits;  conditional E-value: 0.0011
  Herpes_capsid 103 P.PetaegttgGgsdssasGasGgsastlsSgpsssaaasglssgasStsdtasra 157
                      P ta+g +gG  + ++sG   g+as    + s+++aa++  +  sS +  +s a
     KOO23354.1 247 QrPRTASGHGGGLGGDGGSGKGSGAASGP-TASSGLSAAPDHIAQQSSAAAGGSYA 301
                    2499********99999999877766644.44567888888888888877776655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (338 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       420  (0.0234257); expected 358.6 (0.02)
Passed bias filter:                      340  (0.0189637); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.45u 0.23s 00:00:00.68 Elapsed: 00:00:00.38
# Mc/sec: 2666.03
//
Query:       KOO23355.1  [L=264]
Description: ATP-dependent RNA helicase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.1e-45  154.1   0.0    5.7e-45  153.2   0.0    1.4  1  DEAD      DEAD/DEAH box helicase
    1.6e-06   28.2   0.0    2.4e-06   27.7   0.0    1.2  1  ResIII    Type III restriction enzyme, res subunit
  ------ inclusion threshold ------
      0.051   13.9   0.6       0.85    9.9   0.6    2.7  1  AAA_22    AAA domain
       0.11   11.8   0.0        1.1    8.6   0.0    2.0  2  CMS1      U3-containing 90S pre-ribosomal complex subunit


Domain annotation for each model (and alignments):
>> DEAD  DEAD/DEAH box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  153.2   0.0   1.3e-48   5.7e-45       1     172 [.      34     205 ..      34     208 .. 0.93

  Alignments for each domain:
  == domain 1  score: 153.2 bits;  conditional E-value: 1.3e-48
                 -HHHHHHHHHHHTTCEEEEEESTTSSHHHHHHHHHHHHHHHS....TTSTS-EEEEEESSHHHHHHHHHHHHHHTTTST..SEEEEEETTSSHHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxx RF
        DEAD   1 tdiQaeaiplilgggdvlvaaeTGsGKTlaflipvlqivyet....kgktgpkalivePtreLaeqtlnnlkkfkkyid..lrvlliiggvaardqlsk 93 
                 t++Q+eaip+il+g dv ++a+TGsGKT+af++p+lq++ +t     + ++  +li++Ptr La qt + ++ + + ++   +++++ ggv+ + ql+ 
  KOO23355.1  34 TSVQSEAIPAILSGSDVWAQAPTGSGKTAAFALPLLQRL-DTgaprPRGRHVNTLILSPTRGLAVQTSEAFRALSDSAGtrAKIVALHGGVSINPQLRS 131
                 789************************************.667998788899************************866447777889*********** PP

                 HHTTCSEEEEEHHHHHHHHHCTSSHCTTEEEEEEETHHHHHHTTTHHHHHHHHHHSHHHCTTST.TTSEEEEEESSBSHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxx RF
        DEAD  94 ldngvdivvgtpgrlddllstgklnlsqvrflVlDEadrlldqgfsdfinrilnqlpqitcdgk.lqrqvivlSATlpkd 172
                 l  g+d++v+tpgrl+d+l ++ ++l++v +lVlDEadrll ++fs +++r+l++lp      + ++rq++v+SAT+p++
  KOO23355.1 132 LAGGADVLVATPGRLLDVLANNGVQLERVATLVLDEADRLLANEFSFELERVLEALP------PpASRQTLVFSATFPFT 205
                 *888***************99999********************************5......448999********965 PP

>> ResIII  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.7   0.0   5.4e-10   2.4e-06       7     170 ..      36     203 ..      26     204 .. 0.80

  Alignments for each domain:
  == domain 1  score: 27.7 bits;  conditional E-value: 5.4e-10
                 HHHHHHHHHT......TTSEEEEEESTTSTHHHHH.HHHHHHH-S..........-EEEEESSHHHHHHHHHHGGGGTGG...........GEEEESSS CS
      ResIII   7 yQeeaienlleklkskrdkrglikmaTGtGKTlva.aklierllkkgkee.....kflflvprkslleqtleefkkflseayke.......igkkvsgd 92 
                  Q eai ++l+         +  +++TG+GKT    + l +rl + +++      ++l+l p++ l  qt e+f+ ++++a ++        g ++   
  KOO23355.1  36 VQSEAIPAILSG------SDVWAQAPTGSGKTAAFaLPLLQRLDTGAPRPrgrhvNTLILSPTRGLAVQTSEAFRALSDSAGTRakivalhGGVSI--- 125
                 566666666533......3577899*******99967788888887777699**************************999877543333222223... PP

                 -B--.........-SEEEEEHHHHHHTH........HHHTTT-SEEEEETGGGTTS.T...TTHHHHHT---...SEEEEEESS-S CS
      ResIII  93 kkka..kekdstnkkilvttiqsldadseeeeeeseellrdrfdviiiDEaHrlgakk...swreilekfke...avllglTATpe 170
                    +   ++ +  +++lv+t  +l   +     +++  + +r   ++ DEa rl a++   + +++le++++      l ++AT++
  KOO23355.1 126 ---NpqLRSLAGGADVLVATPGRLLDVL-----ANNGVQLERVATLVLDEADRLLANEfsfELERVLEALPPpasRQTLVFSATFP 203
                 ...23555669*****************.....99999999999************868789999****97767688999****86 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   0.6   0.00019      0.85      13     109 ..      55     178 ..       9     201 .. 0.60

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.00019
      AAA_22  13 esGtGKTtllrrlleqldeeakaeeerpevvfvtlpsstsskdllrellralglelka..........................erlsseellealeqa 85 
                 ++G+GKT   +  l q     +++ ++++v +  l+   +++   +e +ral +++ +                            ++  +ll+ l+++
  KOO23355.1  55 PTGSGKTAAFALPLLQRLDTGAPRPRGRHVNTLILSPTRGLAVQTSEAFRALSDSAGTrakivalhggvsinpqlrslaggadvLVATPGRLLDVLANN 153
                 666666666655544443333333333333333333333222223333333333333344456666666666666666665555445555666555555 PP

      AAA_22  86 lraravielliiDEaqhlr.seeal 109
                   +  +++ l++DEa++l  +e  +
  KOO23355.1 154 GVQLERVATLVLDEADRLLaNEFSF 178
                 555545688********75432222 PP

>> CMS1  U3-containing 90S pre-ribosomal complex subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.6   0.0   0.00024       1.1     179     209 ..     137     167 ..      77     177 .. 0.77
   2 ?    1.0   0.0     0.048   2.1e+02      31      68 ..     220     257 ..     205     261 .. 0.79

  Alignments for each domain:
  == domain 1  score: 8.6 bits;  conditional E-value: 0.00024
        CMS1 179 giavGtpgRildLleeeslsvdeLkrivlDa 209
                  + v tpgR+ld+l ++ ++++ +  +vlD 
  KOO23355.1 137 DVLVATPGRLLDVLANNGVQLERVATLVLDE 167
                 46799************************96 PP

  == domain 2  score: 1.0 bits;  conditional E-value: 0.048
        CMS1  31 rkkgklketq.DvkaglteavalqdpelLadylaqklkr 68 
                 r  ++l++ + D + g  + ++    ++ ad++a+klk 
  KOO23355.1 220 RVSSELAQAAaDLE-GWARCLVFVGSQKAADHVASKLKN 257
                 55677877776877.9999999999***********997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (264 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       397  (0.0221429); expected 358.6 (0.02)
Passed bias filter:                      345  (0.0192426); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.43u 0.24s 00:00:00.67 Elapsed: 00:00:00.39
# Mc/sec: 2049.70
//
Query:       KOO23356.1  [L=1115]
Description: multidrug resistance protein 3, partial [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.5e-64  218.3  29.2    6.8e-33  114.5  10.5    2.2  2  ABC_membrane   ABC transporter transmembrane region
    1.2e-33  116.5   0.0    2.6e-33  115.5   0.0    1.6  1  ABC_tran       ABC transporter
    9.8e-07   28.4   1.9    3.9e-05   23.2   1.9    2.2  1  SMC_N          RecF/RecN/SMC N terminal domain
     0.0016   18.7   0.2      0.016   15.5   0.2    2.5  1  AAA_22         AAA domain
     0.0028   17.3   0.1     0.0073   16.0   0.1    1.6  1  AAA_29         P-loop containing region of AAA domain
     0.0057   16.0   0.2      0.033   13.5   0.0    2.1  2  Zeta_toxin     Zeta toxin
     0.0093   16.4   2.0      0.011   16.1   0.4    2.0  1  AAA_16         AAA ATPase domain
  ------ inclusion threshold ------
      0.018   15.0   0.0      0.047   13.6   0.0    1.6  1  RsgA_GTPase    RsgA GTPase
      0.019   14.7   0.0      0.028   14.1   0.0    1.2  1  AAA_15         AAA ATPase domain
      0.026   14.7   0.2       0.48   10.7   0.2    2.9  1  SbcCD_C        Putative exonuclease SbcCD, C subunit
      0.031   14.2   0.1      0.074   13.0   0.1    1.6  1  APS_kinase     Adenylylsulphate kinase
      0.038   14.5   0.0        0.1   13.1   0.0    1.8  1  AAA_18         AAA domain
      0.045   12.9   0.0      0.075   12.2   0.0    1.2  1  G-alpha        G-protein alpha subunit
      0.052   13.3   0.0       0.13   12.0   0.0    1.6  2  AAA_21         AAA domain, putative AbiEii toxin, Type IV TA 
      0.078   13.4   1.3       0.91   10.0   1.3    2.5  1  AAA            ATPase family associated with various cellular
      0.079   12.5   0.1        1.5    8.4   0.0    2.5  2  AAA_25         AAA domain


Domain annotation for each model (and alignments):
>> ABC_membrane  ABC transporter transmembrane region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  109.7  10.7   1.8e-34     2e-31       3     256 ..      16     272 ..      14     286 .. 0.91
   2 !  114.5  10.5   6.1e-36   6.8e-33       2     270 ..     806    1086 ..     805    1091 .. 0.95

  Alignments for each domain:
  == domain 1  score: 109.7 bits;  conditional E-value: 1.8e-34
                   HHHHHHHHHHHHHHHHHHHHHHHHHHHHSSTCCHH....HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSTHHHHHHS CS
  ABC_membrane   3 liillailagvlsplfplvlgrildtlldkgdpet....ealnvysllllllglaqfilallqsyllnvtgerlskrlrrklfkkilrqpmsffdtn 95 
                   l+ ++++ +gv+++l  ++++ ++dt   ++++       ++++++ +l++l l++ +l ++ + l    +++++ +++++++k+ilrq++++fd  
    KOO23356.1  16 LAGVMQFGVGVVMILPLIFFQDFFDTAGNSQSTGMaidmKQVSYVCQWLVYLSLIMMVLFFFAFLLSGFPAINQKAEWKKRVIKSILRQDIGWFDVS 112
                   6789999********************9765555597776666667777777777777777777777999*************************** PP

                   CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHH CS
  ABC_membrane  96 svGellsrltndvsklrdglgeklglffqslltfvgglivmfylgwkltlvllailpliilvsaviakilkklkkkeqkavakassvaeEslsgirt 192
                   ++ el s++++ + ++  ++ +   ++fq + + +gg++++f+  w+++++++a++pl+++++ ++  +l + +k    a++ a+ +a+E+l  +rt
    KOO23356.1 113 HPEELASKMSEGITRVYKAVDSPSYMVFQGIGMGLGGFVFGFIKDWYVAICTFAVVPLLVVFFGLFLCTLWRSSKVTAAAYNGANGLATEALFSMRT 209
                   ************************************************************************************************* PP

                   HHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSST CS
  ABC_membrane 193 VkafgreeyflekfekaleeakkagikkaianglligitqllgllsyalalwfGttlvisgels 256
                   + ++  e+ f +++++ l+ a  a+  +a + g+++g +q+ ++l+ ++ ++ G++lv + e++
    KOO23356.1 210 IASLSIEKDFATRYKQRLTAAAVAQAGVAPLKGFTGGLAQASFMLLLMVGFLSGGFLVAD-EMD 272
                   **********************************************************76.444 PP

  == domain 2  score: 114.5 bits;  conditional E-value: 6.1e-36
                    HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSS.TCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSTHHHHHH. CS
  ABC_membrane    2 iliillailagvlsplfplvlgrildtlldk.gdpetealnvysllllllglaqfilallqsyllnvtgerlskrlrrklfkkilrqpmsffdt. 94  
                     l++l+a+ +g+  ++  +++  ++  l++  g    ++++++s+++l+++++++i+ +l s ++  ++ rl+ +lrr +f++ lrq+++ffd  
    KOO23356.1  806 GLGCLFAMGTGASPLVGFYYIVDFFGALFQLsGALIRAEVARVSITILIICAIMVICFTLDSGFFGLAAARLTATLRRHAFDAFLRQDIGFFDLd 900 
                    678999999999999999999999999998544444489*******************************************************9 PP

                    .SCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHS.HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH.......... CS
  ABC_membrane   95 .nsvGellsrltndvsklrdglgeklglffqslltfvgglivmfylg.wkltlvllailpliilvsaviakilkklkkkeqkava.......... 177 
                     ns+G+l+s l++ v  +++++g +   +++ l+++v+ l+++f++g w+l+l l++ +p+i+ v+ v+  +l   ++k qk  +          
    KOO23356.1  901 sNSAGDLTSFLAEKVTLMESLTGGSAQAIVRVLASLVSMLVLVFWFGpWQLALFLFGAVPVIMCVMGVMITVLAGDEIKAQKGQEvksahhvaer 995 
                    9********************************************98689************************999999999999999****** PP

                    HHHHHHHHHHHTHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSTHHHHHHHHHHHHHH CS
  ABC_membrane  178 kassvaeEslsgirtVkafgreeyflekfekaleeakkagikkaianglligitqllgllsyalalwfGttlvisgelsvgdlvvflslfail 270 
                     a++++ E++  irtV +f++ee+f+++f   +++ +      +i  +l ++++  +++ ++a+++++ ++l+++g+ ++++   +l lfa++
    KOO23356.1  996 SAGKLLSEVVLSIRTVASFNAEERFYNEFVVGVDRIRALEAPNQIKIALAMACSIPMMMYVFAAMYYYLGYLISQGDTTFEK--GMLPLFAMM 1086
                    ********************************************************************************99..777777654 PP

>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  115.5   0.0   2.3e-36   2.6e-33       2     137 .]     477     626 ..     476     626 .. 0.89

  Alignments for each domain:
  == domain 1  score: 115.5 bits;  conditional E-value: 2.3e-36
                 EEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGGB-HHHCCHCEEEE-SS--S-TTSBHHHH.................HHHT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.................xxxx RF
    ABC_tran   2 knvslklkegekvaivGenGaGKStLlkllagllkpteGeilldgkdlkeqeleslrkeigvlpqepqlfpeltvren.................esde 83 
                 k  sl +++g++va+ G +G+GKSt+++ll + ++p++G +lldg+d+k+ + ++lr+++g + qep lf+++ v++n                  + +
  KOO23356.1 477 KGYSLRISAGQTVALCGASGSGKSTIIQLLERFYDPQSGALLLDGRDIKTLNVRWLRSKLGLVGQEPVLFQGS-VATNiaygktdatreeieaaaRMAN 574
                 6789*********************************************************************.99999***99877776655433333 PP

                 CHHHHHHHSTTGGTTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  84 eiekalsklglkelkdtvvksspssLSgGqkqrvalarallkkpkllllDEpta 137
                   + ++++l++ +  dt v+ ++ +LSgGqkqrva+ara++kkp +lllDE+t+
  KOO23356.1 575 AHDFIMKNLNDGY--DTDVGLRGGKLSGGQKQRVAIARAIVKKPAVLLLDEATS 626
                 3666677777666..77777899*****************************96 PP

>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.2   1.9   3.5e-08   3.9e-05     130     213 ..     591     672 ..     476     677 .. 0.72

  Alignments for each domain:
  == domain 1  score: 23.2 bits;  conditional E-value: 3.5e-08
                 TT-STTCS-HHHHHHHHHHHHHHHHCCS--SEEEECTTTTTS-HHHHHHHHHHHHH..HCTTSEEEEE-SSHHHCCC-SCEEEEEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N 130 agiskelLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvkkvaellke..ksknaQfivislreemlekadklvgvtk 213
                 +g+    LSgG+k+ va+a       vk+ ++ llDe  +aLD++  ++v   l+e  ++++   ivi++r  ++++adk+  v+ 
  KOO23356.1 591 VGLRGGKLSGGQKQRVAIARA----IVKKPAVLLLDEATSALDNESERIVQAALDEimSKQKRTTIVIAHRLSTIRNADKIAVVSE 672
                 3444449*******9988743....456667889******************9996224555889***************987765 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.2   1.4e-05     0.016       6     105 ..     487     632 ..     482     657 .. 0.51

  Alignments for each domain:
  == domain 1  score: 15.5 bits;  conditional E-value: 1.4e-05
      AAA_22   6 gilvvtGesGtGKTtllrrlleqldeeakaee........................................erpevvfvtlpsstsskdllrellral 64 
                 + ++++G sG+GK+t ++ l + +d ++ a                                                                     
  KOO23356.1 487 QTVALCGASGSGKSTIIQLLERFYDPQSGALLldgrdiktlnvrwlrsklglvgqepvlfqgsvatniaygkT-------------------------- 559
                 5679*******************97554444455544444444444444444444444444433333333322.......................... PP

      AAA_22  65 glelka....................................erlsseellealeqalraravielliiDEaqh.lr..s 105
                      +                                    +    +  + a+++a+ ++ +  +l++DEa   l+  s
  KOO23356.1 560 -----DatreeieaaarmanahdfimknlndgydtdvglrggKLSGGQKQRVAIARAIVKKPA--VLLLDEATSaLDneS 632
                 .....0333333333333333344444444444444333444333333344444444444444..777777777665542 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.1   6.5e-06    0.0073      16      39 ..     480     503 ..     474     508 .. 0.83

  Alignments for each domain:
  == domain 1  score: 16.0 bits;  conditional E-value: 6.5e-06
      AAA_29  16 tieidlkgatlltGpsGsGKSTll 39 
                 +++i+  +++ l G+sGsGKST++
  KOO23356.1 480 SLRISAGQTVALCGASGSGKSTII 503
                 5677755599*************8 PP

>> Zeta_toxin  Zeta toxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.5   0.0   2.9e-05     0.033      19      57 ..     489     527 ..     480     531 .. 0.92
   2 ?   -0.9   0.1      0.77   8.6e+02     112     164 ..     708     759 ..     704     769 .. 0.81

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 2.9e-05
  Zeta_toxin  19 illgGqpGAGKselaellkdelerqgnvvrldpDdlRel 57 
                 + l G++G+GKs++++ll++  ++q++++ ld+ d+++l
  KOO23356.1 489 VALCGASGSGKSTIIQLLERFYDPQSGALLLDGRDIKTL 527
                 7799*****************************999987 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 0.77
  Zeta_toxin 112 klaealkkaGYevevvvvavkkelSrlgvldRyeeevaegRlvpkeehdeafe 164
                 k+++a+++a  ++ +v +++ + ++++ v+dR   +++e R  +ke   ++ e
  KOO23356.1 708 KTMDAARAAASSNPLVGLTALPSHTASAVKDRKGRTSKE-RRNSKEMVTATAE 759
                 68889999999999999***************9999777.7777777666655 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.4     1e-05     0.011      21     161 ..     483     642 ..     469     654 .. 0.52

  Alignments for each domain:
  == domain 1  score: 16.1 bits;  conditional E-value: 1e-05
      AAA_16  21 sgrpelvllsGesGvGKsslvrellralekd.ggiflrgkcdqlesaipysalaqalareellrqllde...........aesaeleawrekleeala. 106
                  + ++ v l G+sG+GKs++++ l r +  + g+++l g+  +   +      ++ l r + l  +++e            +  + +a re++e+a++ 
  KOO23356.1 483 ISAGQTVALCGASGSGKSTIIQLLERFYDPQsGALLLDGRDIKT-LN------VRWL-R-SKLGLVGQEpvlfqgsvatnIAYGKTDATREEIEAAARm 572
                 344478******************99888884344455554444.11......1111.1.111222222222333333232222222222222222224 PP

      AAA_16 107 .....................avpelagaeasrllellkrllallsrderplvlvlDdlq.wadeaslqllaaLlrl 161
                                       +++l+g +++r++ + ++++      ++p vl+lD++   +d +s  + +a l++
  KOO23356.1 573 anahdfimknlndgydtdvglRGGKLSGGQKQRVAIA-RAIV------KKPAVLLLDEATsALDNESERIVQAALDE 642
                 4445555555556776666665556666555555544.3333......56777777777755555666666666665 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.0   4.2e-05     0.047      98     120 ..     485     507 ..     479     520 .. 0.87

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 4.2e-05
                  TTSEEEEECSTTSSHHHHHHHHC CS
  RsgA_GTPase  98 kdktsvlvGqSGvGKStLinall 120
                  +++t++l+G SG GKSt+i  l 
   KOO23356.1 485 AGQTVALCGASGSGKSTIIQLLE 507
                  579****************9986 PP

>> AAA_15  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   0.0   2.5e-05     0.028      23      50 ..     487     513 ..     477     654 .. 0.82

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 2.5e-05
      AAA_15  23 eeltvliGkNnsGKSsilealdlFlnnk 50 
                   +  l+G+ +sGKS+i+++l+ F + +
  KOO23356.1 487 Q-TVALCGASGSGKSTIIQLLERFYDPQ 513
                 4.789*******************9976 PP

>> SbcCD_C  Putative exonuclease SbcCD, C subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.2   0.00042      0.48       8      83 ..     574     635 ..     567     642 .. 0.73

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00042
     SbcCD_C   8 nylsfevevrdedgkekelsrssgtlSGGekqflaylalaaalaalyssaegrepalrlvfLDEAFsklDeesiat 83 
                 n ++f ++   +dg ++++  + g+lSGG+kq    +a+a     ++ +      ++++++LDEA s lD+es + 
  KOO23356.1 574 NAHDFIMKNL-NDGYDTDVGLRGGKLSGGQKQR---VAIA----RAIVK------KPAVLLLDEATSALDNESERI 635
                 6677777777.8888889999999999999954...3444....33333......5899***********998765 PP

>> APS_kinase  Adenylylsulphate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.1   6.6e-05     0.074       2      43 ..     486     526 ..     485     539 .. 0.84

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 6.6e-05
                 -EEEEEESSTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHTT CS
  APS_kinase   2 gvvvwltGlsgsGKstianalekkLvekgisvylLdGdnvRh 43 
                 g +v l G sgsGKsti + le+   + +  + lLdG  +++
  KOO23356.1 486 GQTVALCGASGSGKSTIIQLLER-FYDPQSGALLLDGRDIKT 526
                 67999*************99996.566777889999998875 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.0   9.3e-05       0.1       1      20 [.     489     508 ..     489     587 .. 0.81

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 9.3e-05
      AAA_18   1 IlltGtpGvGKttlakeLsk 20 
                 ++l+G++G+GK+t+ + L++
  KOO23356.1 489 VALCGASGSGKSTIIQLLER 508
                 789***************54 PP

>> G-alpha  G-protein alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   6.7e-05     0.075      25      50 ..     488     513 ..     479     529 .. 0.88

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 6.7e-05
                 EEEEEESTTSSHHHHHHHHHHHCS-- CS
     G-alpha  25 kllllGqseSGKsTilkqlkllykkg 50 
                 ++ l+G+s+SGKsTi++ l+++y+++
  KOO23356.1 488 TVALCGASGSGKSTIIQLLERFYDPQ 513
                 5789*******************886 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   0.00012      0.13       3      25 ..     490     512 ..     489     543 .. 0.72
   2 ?   -3.6   0.0       6.8   7.6e+03     243     265 ..     604     623 ..     589     635 .. 0.69

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 0.00012
      AAA_21   3 vliGpNgsGKSnLLdaldllarl 25 
                 +l G+ gsGKS+++++l+ + + 
  KOO23356.1 490 ALCGASGSGKSTIIQLLERFYDP 512
                 799**************988654 PP

  == domain 2  score: -3.6 bits;  conditional E-value: 6.8
      AAA_21 243 rllalltallralkkgsllliDE 265
                 +  a++ a+    kk+++ll+DE
  KOO23356.1 604 QRVAIARAI---VKKPAVLLLDE 623
                 553333333...45559*****9 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   1.3   0.00081      0.91      37     117 ..     581     663 ..     489     668 .. 0.55

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.00081
                 S..............STTHHHHHHHHHHHHHHHTSTSEEEEEETGGGHHHHHTTCCCHHHHHHHHHHHHHHHHTTTSSSTEEEEEEESSGGGSTH CS
         AAA  37 k..............yvgesekkirelfkeakekakpsilfiDEidalaksrsgseseeeervvnqLlteldgvkkkeskvivigatnrpdkldp 117
                 k                  + +k r  +++a  k kp +l++DE+ +   ++       +er+v++ l e+   +k+    + i++++r +++ +
  KOO23356.1 581 KnlndgydtdvglrgGKLSGGQKQRVAIARAIVK-KPAVLLLDEATSALDNE-------SERIVQAALDEIMSKQKR----TTIVIAHRLSTIRN 663
                 1555555555555332222334444445555455.499**********9999.......555555555555555552....56666677666665 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.4   0.0    0.0013       1.5      29      50 ..     482     503 ..     461     510 .. 0.87
   2 ?    0.9   0.1      0.25   2.8e+02     132     188 ..     607     656 ..     558     658 .. 0.79

  Alignments for each domain:
  == domain 1  score: 8.4 bits;  conditional E-value: 0.0013
      AAA_25  29 llpagelallaGapgtGKttla 50 
                  + ag +++l+Ga+g+GK+t+ 
  KOO23356.1 482 RISAGQTVALCGASGSGKSTII 503
                 5789****************86 PP

  == domain 2  score: 0.9 bits;  conditional E-value: 0.25
      AAA_25 132 aleaaieevegvrlvviDplsralggdensnsdvgalvealeriarrtgaavllvhH 188
                 a+++ai +  +++++ +D  ++al+++++     + + +al++i  + + +++++ H
  KOO23356.1 607 AIARAIVK--KPAVLLLDEATSALDNESE-----RIVQAALDEIMSKQKRTTIVIAH 656
                 45666666..4888888888888876555.....88889999998777777777777 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1115 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       952  (0.0530983); expected 358.6 (0.02)
Passed bias filter:                      513  (0.0286129); expected 358.6 (0.02)
Passed Vit filter:                        84  (0.00468515); expected 17.9 (0.001)
Passed Fwd filter:                        23  (0.00128284); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              16  [number of targets reported over threshold]
# CPU time: 0.87u 0.33s 00:00:01.20 Elapsed: 00:00:00.48
# Mc/sec: 7010.61
//
Query:       KOO23357.1  [L=577]
Description: hypothetical protein Ctob_005153 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
  ------ inclusion threshold ------
      0.016   15.4   0.4      0.063   13.5   0.4    2.1  1  HALZ             Homeobox associated leucine zipper
      0.029   14.2   0.0      0.086   12.7   0.0    1.8  1  PDZ_6            PDZ domain
      0.055   12.7   2.4       0.95    8.7   1.3    2.2  2  Mononeg_mRNAcap  Mononegavirales mRNA-capping region V
      0.082   12.8   0.1       0.15   12.0   0.1    1.3  1  DUF378           Domain of unknown function (DUF378)
       0.16   12.3   0.0       0.37   11.1   0.0    1.6  1  PDZ_2            PDZ domain


Domain annotation for each model (and alignments):
>> HALZ  Homeobox associated leucine zipper
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.4   1.8e-05     0.063      15      35 ..      83     103 ..      79     105 .. 0.87

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 1.8e-05
        HALZ  15 daLksdydsLkkenekLkael 35 
                  +L++d+d+L++++e+L+a+l
  KOO23357.1  83 QQLRADCDALLQQRERLRAQL 103
                 57999***************8 PP

>> PDZ_6  PDZ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   2.4e-05     0.086       7      30 ..     346     369 ..     340     373 .. 0.90

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 2.4e-05
       PDZ_6   7 pgsPAdrAGlrvGDiilsvNGqpv 30 
                 +gsPA+   lr GD ++ +NG+  
  KOO23357.1 346 EGSPAAASELRMGDKVILWNGVAM 369
                 8********************986 PP

>> Mononeg_mRNAcap  Mononegavirales mRNA-capping region V
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.6   0.0     0.019        67      31     111 ..      73     153 ..      66     167 .. 0.79
   2 ?    8.7   1.3   0.00026      0.95     108     166 ..     180     239 ..     162     250 .. 0.80

  Alignments for each domain:
  == domain 1  score: 2.6 bits;  conditional E-value: 0.019
                      HHHH.H-.S-EETTS--TTT..--SSS--EEEEESS-..SSS-S.SS--SS----B-SS-----S.-SS-SS-S--HHHHHHH CS
  Mononeg_mRNAcap  31 plEl.lkvkliklseackeCesegsdknyvsvalprkivleqesketrglrvpYlGSkTkekvea.elakvkkasaalkeAir 111
                      p E+ +k+++++l  +c  +  +  +  +  + ++++ + e   +e  + ++  lG++T++   +   +++k++ ++++ Ai+
       KOO23357.1  73 PAEFvTKAEAQQLRADCDALL-QQRERLRAQLIVEQE-RRERAEAELVAVGAQWLGTETQDALRQrAELEKKRELQLARTAIQ 153
                      667656788888888898886.444445788778877.556666699999***********9999677799999999999996 PP

  == domain 2  score: 8.7 bits;  conditional E-value: 0.00026
                      HHHHHHHHTTTTT-TT.T-HHHHHHHHHHHHHS----.---.-S------SSSS-SSSS- CS
  Mononeg_mRNAcap 108 eAirlasvltwavged.selakliikllssrvnldleelkaltpsktsgnlvHRlndsst 166
                      +A +l++ l  a +++ ++ ++++ +++++ +n+++ee  +l++   +++++HRl+ +  
       KOO23357.1 180 SAAQLRMQLRAALQQElEQAQREAREAVRAHLNASYEERSRLRTALSTAEAMHRLEVEAL 239
                      56667766666665552777889********************************97765 PP

>> DUF378  Domain of unknown function (DUF378)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.1   4.1e-05      0.15       6      36 ..     318     348 ..     314     355 .. 0.87

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 4.1e-05
      DUF378   6 ialiLviiGalNWgliGlfdfdLVaalfgge 36 
                 ++l+++++G++N   +Gl   +LV++l  g+
  KOO23357.1 318 MTLTIALVGCINGVGVGLDASNLVNMLAEGS 348
                 799***********************99875 PP

>> PDZ_2  PDZ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0    0.0001      0.37      17      47 ..     340     370 ..     329     405 .. 0.72

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.0001
                 EEEEE-TTSGGGGT.--TT-EEEEETTB--S CS
       PDZ_2  17 lvvsVkeggPaakaglkagDvilkvdgkkvk 47 
                 lv    eg+Paa++ l++gD+++  +g+++ 
  KOO23357.1 340 LVNMLAEGSPAAASELRMGDKVILWNGVAMI 370
                 5677899****************99999874 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (577 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1887  (0.105248); expected 358.6 (0.02)
Passed bias filter:                      492  (0.0274416); expected 358.6 (0.02)
Passed Vit filter:                        56  (0.00312343); expected 17.9 (0.001)
Passed Fwd filter:                        14  (0.000780858); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.70u 0.30s 00:00:01.00 Elapsed: 00:00:00.44
# Mc/sec: 3935.77
//
Query:       KOO23358.1  [L=159]
Description: hypothetical protein Ctob_005151 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.6e-07   29.8   0.0    5.1e-07   29.7   0.0    1.1  1  Methyltransf_23  Methyltransferase domain
      9e-07   29.5   0.0    1.2e-06   29.1   0.0    1.2  1  Methyltransf_11  Methyltransferase domain
    1.1e-06   29.2   0.0    1.5e-06   28.9   0.0    1.2  1  Methyltransf_12  Methyltransferase domain
    1.1e-05   26.0   0.0    1.5e-05   25.6   0.0    1.2  1  Methyltransf_25  Methyltransferase domain
      0.002   17.9   0.0     0.0022   17.8   0.0    1.1  1  Methyltransf_31  Methyltransferase domain
  ------ inclusion threshold ------
      0.031   12.8   0.0       0.04   12.5   0.0    1.0  1  Methyltransf_29  Putative S-adenosyl-L-methionine-dependent m
      0.062   12.6   0.0      0.071   12.4   0.0    1.1  1  Ubie_methyltran  ubiE/COQ5 methyltransferase family


Domain annotation for each model (and alignments):
>> Methyltransf_23  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.7   0.0     2e-10   5.1e-07      42     125 ..      32     107 ..       8     143 .. 0.73

  Alignments for each domain:
  == domain 1  score: 29.7 bits;  conditional E-value: 2e-10
  Methyltransf_23  42 engf.svtgvDlspeaveiaekakkaqkdqfdeqeaaepqgkfdlIvlrevlehvpdppellrqiatllkpgGylllseplasl......k 125
                      +ngf + + vDl ++          a+ +++       ++++fd++v+++++eh  +  ++l ++++ll+p G+++++e +++l      +
       KOO23358.1  32 KNGFlNGVPVDLHSI---------GAEEVPY------SENETFDVVVMINCIEHTFNAFATLETAYRLLRPRGLFIFQERAVRLsendqiY 107
                      455555555666443.........2333444......7899***************************************99994444441 PP

>> Methyltransf_11  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.1   0.0   4.5e-10   1.2e-06      44      96 .]      40      93 ..      11      93 .. 0.87

  Alignments for each domain:
  == domain 1  score: 29.1 bits;  conditional E-value: 4.5e-10
                     EEEETTEECCCTSS-T.T-EEEEEEES-CCC-CCHHHHHHHHHHHEEEEEEEEE CS
  Methyltransf_11 44 kvefvvadaeklpfed.nsfDlvvssevlhhvedpekalkeiaRvLkpgGllvi 96
                      v+++   ae++p+ + ++fD+vv+ ++++h  +  ++l+ ++R+L+p Gl+++
       KOO23358.1 40 PVDLHSIGAEEVPYSEnETFDVVVMINCIEHTFNAFATLETAYRLLRPRGLFIF 93
                     5778888899***99946**************99******************97 PP

>> Methyltransf_12  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.9   0.0   5.7e-10   1.5e-06      64      98 ..      49      90 ..       6      91 .. 0.78

  Alignments for each domain:
  == domain 1  score: 28.9 bits;  conditional E-value: 5.7e-10
  Methyltransf_12 64 g.......ssfDlvvasnvlhhlkdirevldnirklLkpgGr 98
                     +       ++fD+vv++n+++h+ +  ++l+ +++lL+p G 
       KOO23358.1 49 EevpysenETFDVVVMINCIEHTFNAFATLETAYRLLRPRGL 90
                     133445668*******************************97 PP

>> Methyltransf_25  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.6   0.0   5.8e-09   1.5e-05      23      97 .]      12      89 ..       2      89 .. 0.78

  Alignments for each domain:
  == domain 1  score: 25.6 bits;  conditional E-value: 5.8e-09
                     EEEEEESS.HHHHHHHHHHHHH...TTTTEEEEESBCCGBSS.STTTEEEEEEESTGGGSSHHHHHHHHHHHHHHEEEEE CS
  Methyltransf_25 23 kvtgvDis.eemleaareraee...eglnvefvqgdaedlpf.edgsfDlvvssgalhhlsdedlekalkeiarvLkpgG 97
                     ++t vD+   ++l+  ++ +++   +g+ v+++   ae++p+ e+++fD+vv++++++h+   ++ ++l+ ++r+L+p G
       KOO23358.1 12 SITLVDPGiNGYLRSGNTLYKNgflNGVPVDLHSIGAEEVPYsENETFDVVVMINCIEHTF--NAFATLETAYRLLRPRG 89
                     66666664256677777777666667889************74777**********99944..46789**********98 PP

>> Methyltransf_31  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.8   0.0   8.8e-07    0.0022      61     113 ..      44      97 ..      24     133 .. 0.77

  Alignments for each domain:
  == domain 1  score: 17.8 bits;  conditional E-value: 8.8e-07
  Methyltransf_31  61 gdieeleklled.ekfDlilsnevlnaladpdkileeiervlkpggilliedpr 113
                       +i + e  +++ e+fD+++  + + ++ +  ++le + r+l+p g ++ ++  
       KOO23358.1  44 HSIGAEEVPYSEnETFDVVVMINCIEHTFNAFATLETAYRLLRPRGLFIFQERA 97 
                      44554442344449***********************************99876 PP

>> Methyltransf_29  Putative S-adenosyl-L-methionine-dependent methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   1.5e-05      0.04     162     226 ..      38     102 ..      34     111 .. 0.84

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 1.5e-05
  Methyltransf_29 162 gvpailavlgtkrlpyPs.rsfdlihCsrCridwteedgilllevdRvlRpgGyfvlsappvyerk 226
                      gvp  l  +g++ +py   ++fd++    C i++t +  + l    R+lRp G f++    v   +
       KOO23358.1  38 GVPVDLHSIGAEEVPYSEnETFDVVVMINC-IEHTFNAFATLETAYRLLRPRGLFIFQERAVRLSE 102
                      89999***********85269*******99.788888888888899***********998887333 PP

>> Ubie_methyltran  ubiE/COQ5 methyltransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   2.8e-05     0.071     100     153 ..      41      95 ..      12     110 .. 0.84

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 2.8e-05
                      EEEEE--TTT-TTS-.T-EEEEEEES-GGG-S-HHHHHHHHHHHEEEEEEEEEEE CS
  Ubie_methyltran 100 ieflqanaeeLpfed.dsfDvvtvsfGlrnvtDklkaLkeayrvlkpGGrlvvle 153
                      +++    aee+p+++ ++fDvv +   +  + +   +L++ayr l+p G ++  e
       KOO23358.1  41 VDLHSIGAEEVPYSEnETFDVVVMINCIEHTFNAFATLETAYRLLRPRGLFIFQE 95 
                      666677899***98769********************************887655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (159 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       321  (0.017904); expected 358.6 (0.02)
Passed bias filter:                      315  (0.0175693); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.40u 0.28s 00:00:00.68 Elapsed: 00:00:00.44
# Mc/sec: 1094.51
//
Query:       KOO23359.1  [L=2768]
Description: tir-containing protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.2e-18   66.4   0.0    1.2e-08   35.6   0.0    3.4  3  TIR_2            TIR domain
    1.7e-05   23.6   5.0      0.065   11.7   0.0    3.7  4  Proteasom_PSMB   Proteasome non-ATPase 26S subunit
  ------ inclusion threshold ------
       0.01   16.4   7.4        7.3    7.2   0.0    4.7  4  Anti-adapt_IraP  Sigma-S stabilisation anti-adaptor protein
      0.029   14.2   0.4       0.54   10.1   0.1    3.0  2  DUF3636          Protein of unknown function (DUF3636)
       0.03   14.1   0.0        9.5    6.0   0.0    2.8  3  TIR              TIR domain
      0.082   12.7   0.1         28    4.6   0.0    2.9  2  DUF2016          Domain of unknown function (DUF2016)
       0.12   12.1   0.0       0.55   10.0   0.0    2.1  2  DUF2922          Protein of unknown function (DUF2922)
       0.16   12.0  30.0       0.71   10.0   0.0   11.6 14  Arm              Armadillo/beta-catenin-like repeat
       0.19   11.1   4.7        6.4    6.1   0.4    2.4  2  DUF969           Protein of unknown function (DUF969)


Domain annotation for each model (and alignments):
>> TIR_2  TIR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.6   0.0   5.8e-12   1.2e-08       9     111 ..    1748    1871 ..    1735    1878 .. 0.76
   2 !   26.6   0.0   3.6e-09   7.2e-06       2      77 ..    2210    2282 ..    2209    2314 .. 0.84
   3 ?   -1.9   0.0       2.6   5.1e+03      52      77 ..    2592    2617 ..    2525    2664 .. 0.64

  Alignments for each domain:
  == domain 1  score: 35.6 bits;  conditional E-value: 5.8e-12
       TIR_2    9 dk.ewaeklaeaLeaagir.vwldrwdlkpgedweeeieeaiessdvvlvvlspayles..........ewcreeleaaleaaeegkkrlipvlle. 92  
                  d+ e +  +++aL +ag+  +++d++  +   d+ +++ee+i +s++v+v+l+++y+++          +++r e++ a +  ++g  ++ipv++e 
  KOO23359.1 1748 DNvERVGAVKAALAKAGLVpCLVDAE--RDANDVIRQMEEGIAQSACVIVFLTESYMKKaaglgskgddDNARFEFSQACS-PSKGVAKIIPVVMEp 1841
                  43388999*********664899995..7899*************************999999998877779999999995.3344566*******7 PP

       TIR_2   93 .....pekppl.....aslqyidlskk.de 111 
                       +  +pl     +++ +idl ++ de
  KOO23359.1 1842 qclaqTSWQPLflgklGGKEFIDLARDnDE 1871
                  654431122223455599999999966444 PP

  == domain 2  score: 26.6 bits;  conditional E-value: 3.6e-09
       TIR_2    2 FiSyssed.kewaeklaeaLeaagirvwldrwdlkpgedweeeieeaiessdvvlvvlspaylesewcreeleaale 77  
                  FiS+ ++  +++a+ l++    +g+++++d ++l++ +d++      +  +dv+++vls+  +ese c++el +a++
  KOO23359.1 2210 FISHKRSSaQDFARGLHSLIVHHGHSCFIDVENLESLSDLP----MVVAGCDVFILVLSDGVFESEFCMQELASAVN 2282
                  9*****8758*********************9986666555....4569**************************96 PP

  == domain 3  score: -1.9 bits;  conditional E-value: 2.6
       TIR_2   52 dvvlvvlspaylesewcreeleaale 77  
                  + vl++l  +y++  w++ e+ +a++
  KOO23359.1 2592 ASVLILLDMSYMSRFWTQFEAWMAFQ 2617
                  35788888888888888887555553 PP

>> Proteasom_PSMB  Proteasome non-ATPase 26S subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.5   0.3   3.8e-05     0.075      85     187 ..     444     542 ..     439     563 .. 0.81
   2 ?   -1.9   0.1      0.44   8.9e+02     199     248 ..     634     685 ..     614     693 .. 0.69
   3 ?   -2.6   0.0      0.74   1.5e+03      57     100 ..     892     934 ..     873     949 .. 0.77
   4 !   11.7   0.0   3.3e-05     0.065     187     256 ..    1628    1701 ..    1622    1711 .. 0.85

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 3.8e-05
  Proteasom_PSMB  85 vvlleglshanpnvkalvLaeleRiveekegalellkneelllliikalreedlsvaeeairllskllkqeagleelkskLkallkrndivRari 179
                     ++ll+ l+h + +vk+     l++  ++ +g+ el+  +   +l + al+  + ++a  air l++l+ +  g ++l++  + +lk +   R   
      KOO23359.1 444 QALLRQLPHEDSSVKVA--EALAKLAQTDDGQDELIRAKAAPQLLAAALEAAEDAAAADAIRALAHLAVHADGRAQLSKLAELALKGERALRL-- 534
                     57899**********99..8899999**********************************************999997655555555665554.. PP

  Proteasom_PSMB 180 Yelavela 187
                       +a+  +
      KOO23359.1 535 LAIAIATS 542
                     34444444 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 0.44
  Proteasom_PSMB 199 ellekllkeldg.eDvLvqldalelltelAegkhgleyleq.kgvvdkisel 248
                     +lle++l   ++ +    + +a++l+  l++++ g++++ + +gvv +++ l
      KOO23359.1 634 NLLERILLRTLDaDSRPQRYQAINLVMVLSRSEDGAAAVVRvEGVVARLARL 685
                     377776655444166667899**********999988765438999988766 PP

  == domain 3  score: -2.6 bits;  conditional E-value: 0.74
  Proteasom_PSMB  57 reqvtlcvellklilkalavdelaedlkvvlleglshanpnvka 100
                     r+  + + +ll+ +l++ + +  ++ +++v++  lsha   +++
      KOO23359.1 892 RQCDDAATQLLESLLGTANRES-SQTYRSVVEGILSHAARPLLV 934
                     444567899*******998877.99************9866655 PP

  == domain 4  score: 11.7 bits;  conditional E-value: 3.3e-05
  Proteasom_PSMB  187 akkSaealsivte..llekllkeldg.eDvLvqldalelltelAe.gkhgleyleqkgvvdkiselierveedP 256 
                      a +S++   +  +  ++ ++++ l g +D  ++++al++lt++Ae ++  ++ + + + +d +  l++r+   P
      KOO23359.1 1628 ACESPDGARVAFKagVVAEAVQALSGaRDTQLRASALKTLTSVAEnSEAARASMRDGNLIDTLVRLLHRSWAVP 1701
                      555666655555556999***************************9999*****************99987666 PP

>> Anti-adapt_IraP  Sigma-S stabilisation anti-adaptor protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.2   0.0    0.0036       7.3       7      48 ..      16      57 ..      14      77 .. 0.87
   2 ?    1.8   0.6      0.18   3.6e+02       5      37 ..     459     491 ..     458     516 .. 0.85
   3 ?   -2.6   0.0       4.2   8.3e+03      20      49 ..     824     853 ..     821     855 .. 0.86
   4 ?    7.2   0.0    0.0036       7.3       7      48 ..    1061    1102 ..    1059    1122 .. 0.87

  Alignments for each domain:
  == domain 1  score: 7.2 bits;  conditional E-value: 0.0036
  Anti-adapt_IraP  7 elLvklakkeeeskeLtaqVealelllsallltlskekvqel 48
                      lL  la+ ++ +k+L a ++a ++    ++ + s+     +
       KOO23359.1 16 TLLTHLARTDAGAKALKALIDARAVCAVRMVVATSHARAAAM 57
                     69*********************9999999888887766665 PP

  == domain 2  score: 1.8 bits;  conditional E-value: 0.18
  Anti-adapt_IraP   5 ilelLvklakkeeeskeLtaqVealelllsall 37 
                      ++e L+kla+ +  + eL    +a +ll +al 
       KOO23359.1 459 VAEALAKLAQTDDGQDELIRAKAAPQLLAAALE 491
                      6788**************999999999988884 PP

  == domain 3  score: -2.6 bits;  conditional E-value: 4.2
  Anti-adapt_IraP  20 keLtaqVealelllsallltlskekvqeli 49 
                       +L  q  a   +l al++ l++++v++++
       KOO23359.1 824 AKLKQQLVAAKTFLPALVKDLDEDNVETVS 853
                      678999999999***********9998875 PP

  == domain 4  score: 7.2 bits;  conditional E-value: 0.0036
  Anti-adapt_IraP    7 elLvklakkeeeskeLtaqVealelllsallltlskekvqel 48  
                        lL  la+ ++ +k+L a ++a ++    ++ + s+     +
       KOO23359.1 1061 TLLTHLARTDAGAKALKALIDARAVCAVRMVVATSHARAAAM 1102
                       69*********************9999999888887766665 PP

>> DUF3636  Protein of unknown function (DUF3636)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.6   0.0      0.24   4.7e+02     111     144 ..     652     685 ..     643     689 .. 0.90
   2 ?   10.1   0.1   0.00027      0.54      97     147 ..    1646    1696 ..    1624    1697 .. 0.90

  Alignments for each domain:
  == domain 1  score: 0.6 bits;  conditional E-value: 0.24
                 HHHHHHHHHHHHHSHHHHHHHHH-SSHHHHHHHH CS
     DUF3636 111 rleaLrvLtafarspfgslalashdsaigRlvrv 144
                 r +a+++ + ++rs+ g++a+++ + +++Rl r+
  KOO23359.1 652 RYQAINLVMVLSRSEDGAAAVVRVEGVVARLARL 685
                 899***************************9876 PP

  == domain 2  score: 10.1 bits;  conditional E-value: 0.00027
                  ..TS-TTSHHHHHHHHHHHHHHHHHHHSHHHHHHHHH-SSHHHHHHHHHHH CS
     DUF3636   97 egeakvteaeilelrleaLrvLtafarspfgslalashdsaigRlvrvLsd 147 
                  e+ ++ + a+ ++lr  aL++Lt++a ++ +++a ++  ++i  lvr+L++
  KOO23359.1 1646 EAVQALSGARDTQLRASALKTLTSVAENSEAARASMRDGNLIDTLVRLLHR 1696
                  566777889999*************************************95 PP

>> TIR  TIR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.0   0.0    0.0048       9.5       2      73 ..    1732    1805 ..    1731    1844 .. 0.77
   2 ?   -3.7   0.0       4.3   8.7e+03      74     111 ..    1955    1991 ..    1951    2005 .. 0.74
   3 ?    5.0   0.0    0.0095        19       2      85 ..    2207    2283 ..    2206    2315 .. 0.78

  Alignments for each domain:
  == domain 1  score: 6.0 bits;  conditional E-value: 0.0048
                  CCEEE...E...CCCHHCH..HHCHHHHHTTCCTTSEEEESSTT--SSS-HHHHHHHHHHCSSEEEEEE-TTHHHHC CS
         TIR    2 Yvvfl...sfrgsdtrenf..vshllkellekqkgiklfiddrdlepGeaiadelksaIkkSrrlivvlSknyassk 73  
                  Y  +l   s+r + +r+n+  v ++  +l   + g   ++ d +    ++++ ++++ I +S  +iv l ++y+++ 
  KOO23359.1 1732 YSAYLshdSARDELKRDNVerVGAVKAAL--AKAGLVPCLVDAE-RDANDVIRQMEEGIAQSACVIVFLTESYMKKA 1805
                  55566566888888888884455788888..9999999*99555.7888999**********************875 PP

  == domain 2  score: -3.7 bits;  conditional E-value: 4.3
                  CCCHHHHHHHCHHH-CTSTCEEEEECSS-HCCCHTT.H CS
         TIR   74 wcleElekilecalvekgqkvilifyevdpedvrkqtG 111 
                  + l++l++i+e     +++  +li+ +v +e   + +G
  KOO23359.1 1955 KPLDALQYIIEHDA-AQRADALLIVSNVYSEVLSQSVG 1991
                  56899999999999.99999999998888885555445 PP

  == domain 3  score: 5.0 bits;  conditional E-value: 0.0095
                  CCEEEE...CCCHHCHHHCHHHHHTTCCTTSEEEESSTT--SSS-HHHHHHHHHHCSSEEEEEE-TTHHHHCCCCHHHHHHHCH CS
         TIR    2 YvvflsfrgsdtrenfvshllkellekqkgiklfiddrdlepGeaiadelksaIkkSrrlivvlSknyasskwcleElekilec 85  
                  Y  f+  +++ + + f+  l   +   + g + fid   +e+ e++ ++l   + ++ + i vlS    +s+ c++El ++++ 
  KOO23359.1 2207 YNTFI-SHKRSSAQDFARGLHSLI--VHHGHSCFID---VENLESL-SDLPMVVAGCDVFILVLSDGVFESEFCMQELASAVNA 2283
                  55666.455556666777777766..7778888888...5555555.6799999**************************9985 PP

>> DUF2016  Domain of unknown function (DUF2016)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.6   0.0     0.014        28      31      56 ..      55      81 ..      47      86 .. 0.77
   2 ?    4.6   0.0     0.014        28      31      56 ..    1100    1126 ..    1092    1131 .. 0.77

  Alignments for each domain:
  == domain 1  score: 4.6 bits;  conditional E-value: 0.014
     DUF2016 31 lvaanGlflevrrpWLkviqkla.aqk 56
                 + ++G  +  +rpWLk+++ +a a+ 
  KOO23359.1 55 AAMRKGGLMTAVRPWLKALHSMApAER 81
                56678889999***********95444 PP

  == domain 2  score: 4.6 bits;  conditional E-value: 0.014
     DUF2016   31 lvaanGlflevrrpWLkviqkla.aqk 56  
                   + ++G  +  +rpWLk+++ +a a+ 
  KOO23359.1 1100 AAMRKGGLMTAVRPWLKALHSMApAER 1126
                  56678889999***********95444 PP

>> DUF2922  Protein of unknown function (DUF2922)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   0.0   0.00027      0.55      20      65 ..     838     883 ..     836     885 .. 0.92
   2 ?   -2.7   0.0       2.5   4.9e+03      12      40 ..    1265    1293 ..    1262    1294 .. 0.88

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.00027
     DUF2922  20 pnpkedlteaeVkaaMdlIiakniFttkggdlvekksAkivetttt 65 
                 p    dl+e+ V+++  +++  n+F+   g++v + +A++v +t  
  KOO23359.1 838 PALVKDLDEDNVETVSTALLWLNAFPGVAGAIVPLLAAQVVHRTMA 883
                 66678*************************************9965 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 2.5
     DUF2922   12 gktvtlsipnpkedlteaeVkaaMdlIia 40  
                    ++ l++ +p  ++++ ++ +aM  ++a
  KOO23359.1 1265 EARFALRVLEPIVPVQASDAASAMPSLVA 1293
                  568999******************99986 PP

>> Arm  Armadillo/beta-catenin-like repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.1      0.91   1.8e+03      11      24 ..     152     165 ..     148     168 .. 0.84
   2 ?    2.8   0.0     0.064   1.3e+02       2      19 ..     233     250 ..     233     256 .. 0.86
   3 ?    2.2   0.1       0.1     2e+02      12      29 ..     441     458 ..     435     460 .. 0.89
   4 ?   -2.2   0.1       2.5   4.9e+03       2      40 ..     470     509 ..     469     510 .. 0.70
   5 ?   -1.8   0.0       1.9   3.7e+03       7      27 ..     672     692 ..     667     694 .. 0.79
   6 ?   -1.4   0.1       1.3   2.7e+03       6      17 ..    1030    1041 ..    1027    1041 .. 0.89
   7 ?   -0.8   0.1      0.91   1.8e+03      11      24 ..    1197    1210 ..    1193    1213 .. 0.84
   8 ?    1.3   0.0       0.2   3.9e+02      10      28 ..    1341    1360 ..    1336    1360 .. 0.88
   9 ?    3.2   0.0     0.048        95       4      22 ..    1378    1396 ..    1376    1406 .. 0.85
  10 ?   10.0   0.0   0.00036      0.71       6      24 ..    1512    1530 ..    1508    1543 .. 0.80
  11 ?   -3.4   0.0       5.8   1.2e+04       9      36 ..    1639    1667 ..    1632    1669 .. 0.70
  12 ?   -2.7   0.0       3.5     7e+03      13      23 ..    1686    1697 ..    1683    1700 .. 0.83
  13 ?    0.5   0.1      0.34   6.8e+02       5      19 ..    1757    1771 ..    1755    1772 .. 0.90
  14 ?    0.6   0.1      0.32   6.3e+02      27      41 .]    2045    2059 ..    2042    2059 .. 0.84

  Alignments for each domain:
  == domain 1  score: -0.8 bits;  conditional E-value: 0.91
                 TTHHHHHHHHTTTS CS
         Arm  11 aGavppLvrLLsse 24 
                 aG++p L+ L++ +
  KOO23359.1 152 AGVLPLLLPLMRAG 165
                 8*********9844 PP

  == domain 2  score: 2.8 bits;  conditional E-value: 0.064
                 HHHHHHHHHTTHHHHHHH CS
         Arm   2 senkdavieaGavppLvr 19 
                 s++  a++eaG++p+L +
  KOO23359.1 233 SHQAVAMCEAGVLPRLAK 250
                 58999**********976 PP

  == domain 3  score: 2.2 bits;  conditional E-value: 0.1
                 THHHHHHHHTTTSSHHHH CS
         Arm  12 GavppLvrLLssedeevq 29 
                 Gav++L+r L +ed +v+
  KOO23359.1 441 GAVQALLRQLPHEDSSVK 458
                 9**************997 PP

  == domain 4  score: -2.2 bits;  conditional E-value: 2.5
                 HHHHHHHHHTTHHHHHHHHTT.TSSHHHHHHHHHHHHHHT CS
         Arm   2 senkdavieaGavppLvrLLs.sedeevqeeAawALsNLa 40 
                 ++  d++i+a a p+L++       +    +A +AL++La
  KOO23359.1 470 DDGQDELIRAKAAPQLLAAALeAAEDAAAADAIRALAHLA 509
                 5667888888888888877766666666667777777776 PP

  == domain 5  score: -1.8 bits;  conditional E-value: 1.9
                 HHHHTTHHHHHHHHTTTSSHH CS
         Arm   7 avieaGavppLvrLLssedee 27 
                 +v+  G+v +L rL +++ ++
  KOO23359.1 672 VVRVEGVVARLARLATDQRDS 692
                 56699*********9977655 PP

  == domain 6  score: -1.4 bits;  conditional E-value: 1.3
                  HHHHHTTHHHHH CS
         Arm    6 davieaGavppL 17  
                  dav+ +Gavp L
  KOO23359.1 1030 DAVVALGAVPML 1041
                  89********98 PP

  == domain 7  score: -0.8 bits;  conditional E-value: 0.91
                  TTHHHHHHHHTTTS CS
         Arm   11 aGavppLvrLLsse 24  
                  aG++p L+ L++ +
  KOO23359.1 1197 AGVLPLLLPLMRAG 1210
                  8*********9844 PP

  == domain 8  score: 1.3 bits;  conditional E-value: 0.2
                  HTTHHHHHHHHTT.TSSHHH CS
         Arm   10 eaGavppLvrLLs.sedeev 28  
                  ++Ga++ Lv+ L+ ++d+++
  KOO23359.1 1341 DLGALRTLVNALEqCPDVRI 1360
                  78***********9999876 PP

  == domain 9  score: 3.2 bits;  conditional E-value: 0.048
                  HHHHHHHTTHHHHHHHHTT CS
         Arm    4 nkdavieaGavppLvrLLs 22  
                   +da+ +aG +p+L  +L+
  KOO23359.1 1378 YRDAILDAGLLPRLAGFLK 1396
                  599***********99998 PP

  == domain 10  score: 10.0 bits;  conditional E-value: 0.00036
                  HHHHHTTHHHHHHHHTTTS CS
         Arm    6 davieaGavppLvrLLsse 24  
                   + ++ G+vp+L++LL+s+
  KOO23359.1 1512 AVTVDEGVVPALIKLLESG 1530
                  5679*************75 PP

  == domain 11  score: -3.4 bits;  conditional E-value: 5.8
                  HHTTHHHHHHHHTT.TSSHHHHHHHHHHH CS
         Arm    9 ieaGavppLvrLLs.sedeevqeeAawAL 36  
                   +aG+v   v+ Ls   d++++  A+ +L
  KOO23359.1 1639 FKAGVVAEAVQALSgARDTQLRASALKTL 1667
                  57888888888888777777766666665 PP

  == domain 12  score: -2.7 bits;  conditional E-value: 3.5
                  HHHHHHHHTT.T CS
         Arm   13 avppLvrLLs.s 23  
                   ++ LvrLL+ s
  KOO23359.1 1686 LIDTLVRLLHrS 1697
                  6999*****866 PP

  == domain 13  score: 0.5 bits;  conditional E-value: 0.34
                  HHHHHHTTHHHHHHH CS
         Arm    5 kdavieaGavppLvr 19  
                  k a+ +aG vp Lv+
  KOO23359.1 1757 KAALAKAGLVPCLVD 1771
                  78999********97 PP

  == domain 14  score: 0.6 bits;  conditional E-value: 0.32
                  HHHHHHHHHHHHHTT CS
         Arm   27 evqeeAawALsNLaa 41  
                  ++ + Aa+A++NLaa
  KOO23359.1 2045 SYARIAATAVRNLAA 2059
                  56788********96 PP

>> DUF969  Protein of unknown function (DUF969)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.1   0.4    0.0032       6.4      67     132 ..      55     120 ..      11     142 .. 0.83
   2 ?    6.1   0.4    0.0032       6.4      67     132 ..    1100    1165 ..    1056    1187 .. 0.83

  Alignments for each domain:
  == domain 1  score: 6.1 bits;  conditional E-value: 0.0032
      DUF969  67 glleraGLkeraaklikkikkatagrlllvYllirelaaalglslgGhaqfvRPlvaPmaeaaaek 132
                 + + + GL ++ + ++k +++++ ++  ++  l+  +aaa  +s   h+  + Pl+ Pm +++++ 
  KOO23359.1  55 AAMRKGGLMTAVRPWLKALHSMAPAEREATLGLVSDFAAARDVSTETHVLPLVPLIVPMVQSVISG 120
                 5567889******************************************************99864 PP

  == domain 2  score: 6.1 bits;  conditional E-value: 0.0032
      DUF969   67 glleraGLkeraaklikkikkatagrlllvYllirelaaalglslgGhaqfvRPlvaPmaeaaaek 132 
                  + + + GL ++ + ++k +++++ ++  ++  l+  +aaa  +s   h+  + Pl+ Pm +++++ 
  KOO23359.1 1100 AAMRKGGLMTAVRPWLKALHSMAPAEREATLGLVSDFAAARDVSTETHVLPLVPLIVPMVQSVISG 1165
                  5567889******************************************************99864 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (2768 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       552  (0.0307881); expected 358.6 (0.02)
Passed bias filter:                      309  (0.0172346); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 1.18u 0.30s 00:00:01.48 Elapsed: 00:00:00.48
# Mc/sec: 17354.15
//
Query:       KOO23360.1  [L=332]
Description: peptidyl-prolyl cis-trans isomerase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    4.1e-43  147.4   0.0    6.4e-43  146.8   0.0    1.3  1  Pro_isomerase  Cyclophilin type peptidyl-prolyl cis-trans iso
    0.00051   21.0   0.0    0.00084   20.3   0.0    1.4  1  CS             CS domain


Domain annotation for each model (and alignments):
>> Pro_isomerase  Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  146.8   0.0   7.1e-47   6.4e-43      14     158 .]     181     329 ..     164     329 .. 0.90

  Alignments for each domain:
  == domain 1  score: 146.8 bits;  conditional E-value: 7.1e-47
  Pro_isomerase  14 ieLfadkaPktvenFlklvkeg...........fYdgttFhRvikgfmvqgGdptgktsageqekkggesi..raipdEitsklkh.krGalamar 95 
                    + L+++++P t++nF++l+ +g              g+tFhR+i+gfm+qgGd+t+ +   +    ggesi  r+++dE+ + +kh k+G+l+ma+
     KOO23360.1 181 LGLHGNQVPRTADNFRALC-TGekgvgkagkplKLAGSTFHRIIPGFMLQGGDFTNADG--T----GGESIygRTFADEN-FGIKHeKAGLLSMAN 268
                    56999**************.5668999999***********************888744..4....44433348******.89999899******* PP

  Pro_isomerase  96 tgkepnsagsqFfItlkeaphldgkytvFGkVveGmdvvekiekvetdeerpkknvkivsaev 158
                    +g  p+++gsqFfIt++e+p+ldgk++vFG+V++Gm++v++ie++  ++ +p+k+v+i+ ++v
     KOO23360.1 269 SG--PDTNGSQFFITVAETPWLDGKHVVFGEVTSGMEIVKRIEALGDSAGKPSKPVTITACGV 329
                    *8..8***************************************877779**********986 PP

>> CS  CS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.3   0.0   9.4e-08   0.00084       2      70 ..      54     127 ..      53     133 .. 0.86

  Alignments for each domain:
  == domain 1  score: 20.3 bits;  conditional E-value: 9.4e-08
                 SCEEEEETTEEEEEEE-TTCTTTTTCEEEEEETTEEEEEETS.CEEEEECE.BSS-BETTTEEEEEET.....TEE CS
          CS   2 kydWyQtldeVvvtiyvkkvnikkkdvkvefkerslkvkigk.eklliege.LfgpIdpeesswties.....kkv 70 
                 +++++ ++d+ +vt ++   ++++kdv +++    l++++ k   l+i+ge L+g +  ee+ w i +     ++v
  KOO23360.1  54 SFSYDDKDDKCIVTMPIAS-DVDSKDVVFSLARGVLTLGV-KgAALPIDGEaLWGRVLSEEAFWEIDNveekgRCV 127
                 688999***********99.9*********99999****9.6689*******************998545555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (332 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       349  (0.0194657); expected 358.6 (0.02)
Passed bias filter:                      327  (0.0182386); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.43u 0.28s 00:00:00.71 Elapsed: 00:00:00.42
# Mc/sec: 2370.82
//
Query:       KOO23361.1  [L=242]
Description: p13-like protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
  ------ inclusion threshold ------
      0.016   14.6   0.0      0.022   14.1   0.0    1.3  1  Mannosyl_trans3  Mannosyltransferase putative


Domain annotation for each model (and alignments):
>> Mannosyl_trans3  Mannosyltransferase putative
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   0.0   1.2e-06     0.022      20     112 ..      30     121 ..      19     184 .. 0.85

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 1.2e-06
  Mannosyl_trans3  20 IkvLralgnkLPIeivikk.eelekefcekilpaaeepkqevwfvnakcvlnedylgkefkgfqnKalAllfssFeevllLDaDnvplknpdkl 112
                      I++  + +++LP  +++ + ++l+ke +  +++  +  k +v + ++  v+ + +++++ +    K+ Al ++ F++v ++D D  + +n+d+l
       KOO23361.1  30 IRSAGKVKTRLPLHVIVGPeRDLSKERK--LIQEGHRHKVNVSVTEGPFVVPPLWANRYHRLTFGKIGALALTQFDKVFVFDNDMALAHNIDHL 121
                      666677899********99899998876..66656778888888888887777777775555889***************************95 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (242 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       370  (0.020637); expected 358.6 (0.02)
Passed bias filter:                      314  (0.0175135); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.26s 00:00:00.69 Elapsed: 00:00:00.42
# Mc/sec: 1738.45
//
Query:       KOO23362.1  [L=103]
Description: hypothetical protein Ctob_001023 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.013   15.1   0.1       0.02   14.5   0.1    1.3  1  PP_kinase  Polyphosphate kinase middle domain


Domain annotation for each model (and alignments):
>> PP_kinase  Polyphosphate kinase middle domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.5   0.1   1.1e-06      0.02     118     157 ..      63     102 ..      58     103 .] 0.90

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 1.1e-06
                 .---.-------------------EEEEETT--HHHHCCH CS
   PP_kinase 118 edeaedlleeiekeLkkRrrgevvRLeveaempeellkfL 157
                 e+  e lle +++  ++R  g+v RL++e++ p+++++++
  KOO23362.1  63 EQRSEKLLERLKRHFRQRMPGQVQRLQYETKSPPSTKTYI 102
                 46788****************************9998876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (103 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       899  (0.0501422); expected 358.6 (0.02)
Passed bias filter:                      760  (0.0423894); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.27s 00:00:00.67 Elapsed: 00:00:00.42
# Mc/sec: 740.31
//
Query:       KOO23363.1  [L=79]
Description: hypothetical protein Ctob_001018 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
  ------ inclusion threshold ------
      0.027   13.0   0.0      0.028   12.9   0.0    1.0  1  Pox_E2-like  Poxviridae protein


Domain annotation for each model (and alignments):
>> Pox_E2-like  Poxviridae protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   1.6e-06     0.028     135     173 ..      12      50 ..       3      58 .. 0.88

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 1.6e-06
  Pox_E2-like 135 elvaivarllarmsveLseaeieellkandaekadalYk 173
                  ++++ v+ ++a+ ++++ ++e+e+ll+a+ ++k++ +Y+
   KOO23363.1  12 LVATLVNSSVAEQDPQFKKEELEALLRAEHSQKISNVYD 50 
                  57899999******************************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (79 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       929  (0.0518155); expected 358.6 (0.02)
Passed bias filter:                      699  (0.0389871); expected 358.6 (0.02)
Passed Vit filter:                        48  (0.00267723); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.26s 00:00:00.62 Elapsed: 00:00:00.39
# Mc/sec: 607.97
//
Query:       KOO23364.1  [L=272]
Description: f-box only protein 21, partial [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.8e-16   60.4   0.0    2.8e-16   59.8   0.0    1.3  1  YccV-like  Hemimethylated DNA-binding protein YccV like


Domain annotation for each model (and alignments):
>> YccV-like  Hemimethylated DNA-binding protein YccV like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.8   0.0   1.5e-20   2.8e-16       2      97 ..     107     207 ..     106     208 .. 0.80

  Alignments for each domain:
  == domain 1  score: 59.8 bits;  conditional E-value: 1.5e-20
   YccV-like   2 kyrvGqvvrhkrygyrGVivgwdeecaaseewiekigveelsegrnqpfYhvlvdtedsekvsvr.....Yvaeenlelikssep.iehpeigk.yFkr 93 
                 +y++G+v+rhk++g+r+V++gwd++ a + + ++ +  ++l+ g++qpfY++l d  d  +   +     Yva+enle +  s+  i hp+++  +F  
  KOO23364.1 107 HYQIGEVLRHKVFGFRAVVIGWDRRPAVDVSSWDGV--QNLPSGTEQPFYKMLPDLADCIEHLGGprdvrYVAQENLERVPLSHRrILHPSLSAaIFPA 203
                 7**************************999999977..6789***********88877654332244444********988766678888876425677 PP

   YccV-like  94 fdga 97 
                 fdg+
  KOO23364.1 204 FDGT 207
                 7765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (272 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       239  (0.0133304); expected 358.6 (0.02)
Passed bias filter:                      208  (0.0116013); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.23s 00:00:00.66 Elapsed: 00:00:00.41
# Mc/sec: 1979.04
//
Query:       KOO23365.1  [L=174]
Description: hypothetical protein Ctob_001024 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
  ------ inclusion threshold ------
      0.014   15.6   0.1      0.044   14.0   0.1    1.8  1  DUF4099       Protein of unknown function (DUF4099)
       0.28    9.7  19.0       0.35    9.4  19.0    1.2  1  FUSC          Fusaric acid resistance protein family
        1.5    8.3   9.7       0.16   11.5   4.3    2.0  1  AAA_27        AAA domain
        1.7    8.2  15.2        2.4    7.7  15.2    1.3  1  Exonuc_VII_L  Exonuclease VII, large subunit
        2.8    8.5  28.0          9    6.8  13.9    2.2  2  APG6_N        Apg6 coiled-coil region
        3.7    6.3  25.2        4.7    6.0  21.7    2.0  2  Spc7          Spc7 kinetochore protein
        4.1    7.0   9.5        8.5    5.9   9.5    1.5  1  dCache_3      Double sensory domain of two-component sensor k
        4.9    7.2  13.6        2.7    8.0   3.7    2.7  2  DUF1664       Protein of unknown function (DUF1664)
          6    6.8   7.0         13    5.7   1.5    2.1  2  Cauli_AT      Aphid transmission protein
        6.6    4.5  10.2        7.4    4.4  10.2    1.1  1  V_ATPase_I    V-type ATPase 116kDa subunit family
        8.5    6.2  10.3        8.5    6.2   9.1    1.4  1  PIN_8         PIN like domain
        9.7    5.7  37.7        2.8    7.4  31.2    2.0  2  MscS_porin    Mechanosensitive ion channel porin domain


Domain annotation for each model (and alignments):
>> DUF4099  Protein of unknown function (DUF4099)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.1     3e-05     0.044      12      45 ..     137     170 ..     131     174 .] 0.90

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 3e-05
     DUF4099  12 eklGiskedleksgdldkLlkgrktpllpvsiel 45 
                 ++lG+ +++le++++l++  +g++++l +v++++
  KOO23365.1 137 AQLGVLRRKLEQKEQLEDAIEGKHSKLTEVQPCV 170
                 49*************************9999877 PP

>> FUSC  Fusaric acid resistance protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4  19.0   0.00023      0.35     544     655 ..      40     151 ..       2     153 .. 0.77

  Alignments for each domain:
  == domain 1  score: 9.4 bits;  conditional E-value: 0.00023
        FUSC 544 prlaaapparrellrdglaalrlgravlrLrraleralaaearaaldavlaala...frapaaarsarrlrapaaalraldaalaalaaseatsalrra 639
                  r+++ ++++r+l +d   + +  +++++L++++e+ l+a++++  d+  +a      ++ + a +++rl+++  a +a ++ l++ a+ ea+++  ++
  KOO23365.1  40 CRAGTLAEDKRHLSDDQHLQTEAQHCLVQLQHTREQ-LQARTQELADEKGRAETitnAAQKQLATARSRLQQATSAEAACKTQLEQTASAEAQQQ--QV 135
                 35568899****************************.99****9999999988865666666666666667777777777777777777777766..** PP

        FUSC 640 laaLvrlrlalldkas 655
                 +a+L  lr+ l++k++
  KOO23365.1 136 QAQLGVLRRKLEQKEQ 151
                 ************9986 PP

>> AAA_27  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   4.3   0.00011      0.16     150     202 ..      61     113 ..      53     118 .. 0.91

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.00011
      AAA_27 150 easaGlaslrevleaLeaeadelfkprkskkrainealeeleeakkelreaqv 202
                 ea+  l +l++++e+L+a+ +el ++++++++  n+a+++l++a+++l++a+ 
  KOO23365.1  61 EAQHCLVQLQHTREQLQARTQELADEKGRAETITNAAQKQLATARSRLQQATS 113
                 788999*************************9999*************99875 PP

>> Exonuc_VII_L  Exonuclease VII, large subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.7  15.2    0.0016       2.4     146     260 ..      55     167 ..       3     170 .. 0.52

  Alignments for each domain:
  == domain 1  score: 7.7 bits;  conditional E-value: 0.0016
  Exonuc_VII_L 146 eeqleelerrlekaikrlleekkqrleklasrlkspeellerkrqrldeleerleralkkqlkkkrerleelkerlkekleekkerlkklkerlell 242
                    ++l++ +++   +++++ e+ ++r ++la +  ++e+++++++++l  +++rl++a++ ++ + +++le+++ + +++ ++ +++l  l+++le+ 
    KOO23365.1  55 DQHLQTEAQHCLVQLQHTREQLQARTQELADEKGRAETITNAAQKQLATARSRLQQATSAEA-ACKTQLEQTA-SAEAQQQQVQAQLGVLRRKLEQK 149
                   22223333333333333333333333333333346666777777777777777777544442.2222233322.12234455555665555666655 PP

  Exonuc_VII_L 243 eekkerleeleekleals 260
                   e+ ++++e  ++kl+ ++
    KOO23365.1 150 EQLEDAIEGKHSKLTEVQ 167
                   666666666666665555 PP

>> APG6_N  Apg6 coiled-coil region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.6  11.4     0.029        44      13      93 ..      15     103 ..       8     111 .. 0.64
   2 ?    6.8  13.9     0.006         9      46     106 ..      98     161 ..      89     167 .. 0.72

  Alignments for each domain:
  == domain 1  score: 4.6 bits;  conditional E-value: 0.029
      APG6_N  13 eldkqleqaekerdaYeeflkklkkekkeeek....qdeeleeleee....leklekeeeelleeLkelekereeleaelaaleeelea 93 
                 +l++ l++++++r a +++ ++l+  +  + +    + +++++l+ e    l +l+ ++e+l++  +el +e+ + e   +a++++l+ 
  KOO23365.1  15 GLTSALREVRSCRAARQQCNNELEVCRAGTLAedkrHLSDDQHLQTEaqhcLVQLQHTREQLQARTQELADEKGRAETITNAAQKQLAT 103
                 57778888899999999999998844322111233444555555555555577777777777777777777777777777777776665 PP

  == domain 2  score: 6.8 bits;  conditional E-value: 0.006
      APG6_N  46 deeleeleeeleklekeeeelleeLke...lekereeleaelaaleeelealeeeeerfwreyn 106
                 +++l+ ++ +l++  ++e++  ++L++   +e+++++++a+l  l+++le++e+ e++   +++
  KOO23365.1  98 QKQLATARSRLQQATSAEAACKTQLEQtasAEAQQQQVQAQLGVLRRKLEQKEQLEDAIEGKHS 161
                 456677777788866666666555554222899**********************997655555 PP

>> Spc7  Spc7 kinetochore protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.6   0.1     0.067     1e+02     198     231 ..       6      39 ..       1      51 [. 0.80
   2 ?    6.0  21.7    0.0032       4.7     153     251 ..      53     157 ..      41     169 .. 0.57

  Alignments for each domain:
  == domain 1  score: 1.6 bits;  conditional E-value: 0.067
        Spc7 198 keeLeelreelaelkaeieekkkelaelqeqlee 231
                 ++ L+++r  l+++  e+++ ++  ++++++le 
  KOO23365.1   6 STILQQARTGLTSALREVRSCRAARQQCNNELEV 39 
                 6678999999999999999999999999998875 PP

  == domain 2  score: 6.0 bits;  conditional E-value: 0.0032
        Spc7 153 edkelLekqeeeldellpeleeekaeleeeleklqeaaeelesidkeeLeelreelaelkaeieekkkelaelqeqleeleekieelk......eqkse 245
                 +d+++L+ + +     l+ ++e+ ++ ++el++++ +ae +++  +++L+++r++l+++ +  ++ k++l++  +  +++++  ++l       eqk++
  KOO23365.1  53 SDDQHLQTEAQHCLVQLQHTREQLQARTQELADEKGRAETITNAAQKQLATARSRLQQATSAEAACKTQLEQTASAEAQQQQVQAQLGvlrrklEQKEQ 151
                 3444455444444444555555555556677777779********************999888888877776544433333333333300011134444 PP

        Spc7 246 leeeia 251
                 le++i+
  KOO23365.1 152 LEDAIE 157
                 444443 PP

>> dCache_3  Double sensory domain of two-component sensor kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.9   9.5    0.0057       8.5       5      79 ..      55     129 ..      52     160 .. 0.81

  Alignments for each domain:
  == domain 1  score: 5.9 bits;  conditional E-value: 0.0057
    dCache_3   5 keqLeaslqtaenlleqeedqllallelvasspgvaeaisegdreqlerlldsiwndlgleqivlldadgtvilr 79 
                 +++L++++q   ++l++ ++ql+a+ + +a + g ae+i +  ++ql+   +++++ + +e +  +  ++t  ++
  KOO23365.1  55 DQHLQTEAQHCLVQLQHTREQLQARTQELADEKGRAETITNAAQKQLATARSRLQQATSAEAACKTQLEQTASAE 129
                 689********************************************9999999888888877777777777666 PP

>> DUF1664  Protein of unknown function (DUF1664)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.0   3.7    0.0018       2.7      41     111 ..      28      98 ..      22     111 .. 0.59
   2 ?    2.9   3.2     0.069     1e+02      44      88 ..     116     159 ..     101     169 .. 0.64

  Alignments for each domain:
  == domain 1  score: 8.0 bits;  conditional E-value: 0.0018
     DUF1664  41 davesvskqleqvs.eslaatkrhLssridrvdkkldeqkeiskeikeevtevredlseigedvesvkeave 111
                  a ++  ++le     +la+ krhLs++ ++++++ +++    ++++e++++  ++l++ +   e++ +a +
  KOO23365.1  28 AARQQCNNELEVCRaGTLAEDKRHLSDD-QHLQTEAQHCLVQLQHTREQLQARTQELADEKGRAETITNAAQ 98 
                 5666666666665523566777777665.6677777777777777777777666666666666666665543 PP

  == domain 2  score: 2.9 bits;  conditional E-value: 0.069
     DUF1664  44 esvskqleqvseslaatkrhLssridrvdkkldeqkeiskeikee 88 
                 +   +qleq   s +a++++ ++++  + +kl++ +++  +i+ +
  KOO23365.1 116 AACKTQLEQTA-SAEAQQQQVQAQLGVLRRKLEQKEQLEDAIEGK 159
                 44566777754.446677778888888888888777777776544 PP

>> Cauli_AT  Aphid transmission protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.8   0.7     0.016        24     100     154 ..      53     108 ..      43     114 .. 0.80
   2 ?    5.7   1.5    0.0086        13      97     156 ..     109     168 ..      99     172 .. 0.80

  Alignments for each domain:
  == domain 1  score: 4.8 bits;  conditional E-value: 0.016
    Cauli_AT 100 gedkekktklletLkeaqnrikkleeetkklaek.ivtekllkeevkdlderlsei 154
                  +d++ +t+  + L + q+  ++l+ +t++la++   +e  +++  k+l    s++
  KOO23365.1  53 SDDQHLQTEAQHCLVQLQHTREQLQARTQELADEkGRAETITNAAQKQLATARSRL 108
                 6788889999999******************9875788888888888776655555 PP

  == domain 2  score: 5.7 bits;  conditional E-value: 0.0086
    Cauli_AT  97 keggedkekktklletLkeaqnrikkleeetkklaekivtekllkeevkdlderlseird 156
                 +++ + + +  ++le    a+ + ++++ +   l  k++ +++l++ +   + +l+e++ 
  KOO23365.1 109 QQATSAEAACKTQLEQTASAEAQQQQVQAQLGVLRRKLEQKEQLEDAIEGKHSKLTEVQP 168
                 5555555556667777777778999*******************************9985 PP

>> V_ATPase_I  V-type ATPase 116kDa subunit family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.4  10.2    0.0049       7.4      61     167 ..      42     144 ..      12     164 .. 0.61

  Alignments for each domain:
  == domain 1  score: 4.4 bits;  conditional E-value: 0.0049
  V_ATPase_I  61 esleapeekeldeleeelekleeelkelnenleklkkelnelvelkavlekakefleee.eeeeeeeeseeeeee...keeeeeeeseeeeeeelleee 155
                 + + a+++++l++ ++  +++++ l +l+++ e+l+++++el ++k   e++++  +++ ++ +++  ++++++e   k     ++ e+++++  ++++
  KOO23365.1  42 AGTLAEDKRHLSDDQHLQTEAQHCLVQLQHTREQLQARTQELADEKGRAETITNAAQKQlATARSR-LQQATSAEaacK-----TQLEQTASA--EAQQ 132
                 445566677777777777888899999999999999999999999988888888887774333333.332222221222.....222222222..2222 PP

  V_ATPase_I 156 eelsfvaGvikr 167
                 ++++   Gv++r
  KOO23365.1 133 QQVQAQLGVLRR 144
                 334555566655 PP

>> PIN_8  PIN like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.2   9.1    0.0057       8.5      35     120 ..      66     155 ..      56     170 .. 0.65

  Alignments for each domain:
  == domain 1  score: 6.2 bits;  conditional E-value: 0.0057
       PIN_8  35 wvPhqvalEfqrnresviskekkayedlekeleklkkaaekkleealkkwak.kkald....teelrkelkkqleelkeelkaeleelkks 120
                  v  q  +E  + r++ + +ek ++e+++++ +k+ ++a   l++a++ +a+ k++l+    +e  ++++++ql  l+++l +++e+l+++
  KOO23365.1  66 LVQLQHTREQLQARTQELADEKGRAETITNAAQKQLATARSRLQQATSAEAAcKTQLEqtasAEAQQQQVQAQLGVLRRKL-EQKEQLEDA 155
                 566788899999999999999999999999997666666666666666554414455544456666667777777777777.333333332 PP

>> MscS_porin  Mechanosensitive ion channel porin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.6   3.2      0.11   1.7e+02     108     162 ..       9      68 ..       4      70 .. 0.80
   2 ?    7.4  31.2    0.0019       2.8      91     181 ..      63     155 ..      59     167 .. 0.55

  Alignments for each domain:
  == domain 1  score: 1.6 bits;  conditional E-value: 0.11
  MscS_porin 108 lvelqtrperaqqqltearqrlqeirnrL....nstaaage.alsqaqrtalqaelaale 162
                 l++++t ++ a  +  + r + q+ +n+L    ++t a+++  ls++q  +++a+  + +
  KOO23365.1   9 LQQARTGLTSALREVRSCRAARQQCNNELevcrAGTLAEDKrHLSDDQHLQTEAQHCLVQ 68 
                 66777888888888888899999999*999999888777778999999998888876655 PP

  == domain 2  score: 7.4 bits;  conditional E-value: 0.0019
  MscS_porin  91 ssqlqelqeqlaqlnsqlvelqtrperaqqqltearqrlqeirnrL.nstaaage.alsqaqrtalqaelaaleaqieeleqellsnnnrqeL 181
                 +  l +lq+++ ql+++ +el +   ra +   +a+++l++ r+rL ++t+a+ + + + +q ++ +a+++  +aq+  l++ l+   ++ + 
  KOO23365.1  63 QHCLVQLQHTREQLQARTQELADEKGRAETITNAAQKQLATARSRLqQATSAEAAcKTQLEQTASAEAQQQQVQAQLGVLRRKLEQKEQLEDA 155
                 444555666666666666666666666666666666666666666633333333355555555666666666666666666666666666555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (174 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2919  (0.162809); expected 358.6 (0.02)
Passed bias filter:                      603  (0.0336327); expected 358.6 (0.02)
Passed Vit filter:                       112  (0.00624686); expected 17.9 (0.001)
Passed Fwd filter:                        29  (0.00161749); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.63u 0.31s 00:00:00.94 Elapsed: 00:00:00.44
# Mc/sec: 1189.61
//
Query:       KOO23366.1  [L=273]
Description: aldo keto reductase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.7e-22   80.0   0.0    1.2e-17   64.1   0.0    2.1  2  Aldo_ket_red  Aldo/keto reductase family


Domain annotation for each model (and alignments):
>> Aldo_ket_red  Aldo/keto reductase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.1   0.0   6.6e-22   1.2e-17      18     132 ..      46     161 ..      41     170 .. 0.93
   2 !   14.0   0.0   1.2e-06     0.022     232     290 ..     197     253 ..     162     256 .. 0.88

  Alignments for each domain:
  == domain 1  score: 64.1 bits;  conditional E-value: 6.6e-22
                   HHHHHHHHHHHHTT--EEE--TT-TTTHHHHHHHHHHHH-TTTGGG-EEEEEE--SSSTTSSSS-HHHHHHHHHHHHHHHT-S-EEEEEE-S--TTS CS
  Aldo_ket_red  18 eealellrraleaGinffDtAevYgkgqseellGealkksrkkreeviiatKvdlrdaeiksglskeniresleeslkrLgtdyvDllllHrpdpsl 114
                   ++a  +   ale G++++DtA+ Y  g+se  lG+a   s+++r e+++++Kv         +   +   +sle+sl +L+t y+Dlll+H   ++ 
    KOO23366.1  46 QDAESAFASALEVGYRLIDTAPKY--GESEAALGRAWTTSGVPRSELFLTSKV--------GNVGYAAALQSLEASLAKLQTTYLDLLLMHSAVHQP 132
                   578888999***************..***************************........77777889**********************998888 PP

                   -............HHHHHHHHHHHHHTTS CS
  Aldo_ket_red 115 p...........sieevldaleelvkeGk 132
                   +           +++ +++al e + +Gk
    KOO23366.1 133 VakqprsklhaeNRLATWKALLEARAAGK 161
                   88999**********************99 PP

  == domain 2  score: 14.0 bits;  conditional E-value: 1.2e-06
                   HHHHHHHTT--HHHHHHHHHTTSTT-SEEEE--SSHHHHHHHHGGGG----HHHHHHHH CS
  Aldo_ket_red 232 lselakehgvslaqlalryalsqpavgivipgasnieqlednldalelklseeevaeld 290
                   + + ak h  s+ q++lr+ +  +++ ++ip+a + ++  +n   +++ lse+e +++ 
    KOO23366.1 197 ITAAAKAHARSPHQISLRWQI--EQGLCIIPKAATRAHQIENRILFDFALSESEAEAIG 253
                   5667889**************..9*********9999999999999********99986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (273 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       289  (0.0161191); expected 358.6 (0.02)
Passed bias filter:                      256  (0.0142785); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.23s 00:00:00.69 Elapsed: 00:00:00.41
# Mc/sec: 1991.77
//
Query:       KOO23367.1  [L=288]
Description: pili assembly chaperone [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    7.9e-05   22.7   0.0       0.11   12.4   0.0    2.8  2  PAP_fibrillin  PAP_fibrillin


Domain annotation for each model (and alignments):
>> PAP_fibrillin  PAP_fibrillin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.4   0.0   6.1e-06      0.11       2      65 ..      20      88 ..      19     162 .. 0.72
   2 !    7.5   0.0    0.0002       3.6     174     196 ..     246     268 ..     177     270 .. 0.91

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 6.1e-06
  PAP_fibrillin  2 klkrkLldaisgterGls...assdd...raei.eelvkklealnptpaplesldlLdGkWrLlYttskel 65
                   +lk k l + + ++rG s   +ssd+   r ei  +l ++l a+ p+  p+ +l  LdG+W+L++t  +  
     KOO23367.1 20 ELKMKILISAAALDRGQSynpTSSDAyreRMEItTSLMRELIAASPPL-PT-NLAALDGEWELVFTNVAHG 88
                   577788888888999988444444547444455246777777777654.55.6799**********86543 PP

  == domain 2  score: 7.5 bits;  conditional E-value: 0.0002
  PAP_fibrillin 174 wLeitYlDedLRIsRGdeGslfv 196
                      + +Y D d+RI  +  G+lf 
     KOO23367.1 246 SVKLVYFDGDIRIVEDRSGELFL 268
                    56789****************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (288 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       237  (0.0132188); expected 358.6 (0.02)
Passed bias filter:                      229  (0.0127726); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.24s 00:00:00.64 Elapsed: 00:00:00.37
# Mc/sec: 2304.97
//
Query:       KOO23368.1  [L=81]
Description: hypothetical protein Ctob_001019 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (81 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       866  (0.0483016); expected 358.6 (0.02)
Passed bias filter:                      238  (0.0132746); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.21s 00:00:00.53 Elapsed: 00:00:00.35
# Mc/sec: 697.10
//
Query:       KOO23369.1  [L=422]
Description: DNA repair protein complementing xp-a cells-like protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    5.9e-11   42.2   0.0    1.1e-10   41.3   0.0    1.5  1  XPA_C         XPA protein C-terminus
    2.6e-06   26.9   0.0    4.2e-05   23.1   0.1    2.4  2  EF-hand_6     EF-hand domain
    4.5e-06   25.8   0.0    8.8e-05   21.8   0.2    2.3  2  EF-hand_1     EF hand
      7e-05   23.2   0.1    0.00027   21.3   0.0    2.0  2  EF-hand_7     EF-hand domain pair
     0.0016   17.9   0.1     0.0031   16.9   0.1    1.5  1  EF-hand_5     EF hand
  ------ inclusion threshold ------
      0.052   13.4   0.1       0.14   12.0   0.1    1.7  2  EF-hand_8     EF-hand domain pair
       0.12   12.4   3.0       0.45   10.5   3.0    2.1  1  zf-dskA_traR  Prokaryotic dksA/traR C4-type zinc finger
       0.38   11.3   5.2        0.9   10.1   5.2    1.6  1  APG6_N        Apg6 coiled-coil region


Domain annotation for each model (and alignments):
>> XPA_C  XPA protein C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.3   0.0   4.9e-14   1.1e-10       1      51 []     112     167 ..     112     167 .. 0.89

  Alignments for each domain:
  == domain 1  score: 41.3 bits;  conditional E-value: 4.9e-14
       XPA_C   1 kysLiTkTeakedYLLtdedLkdre.lLkflkkkNPhnst....wgdMkLYlklqV 51 
                 ky+Li kT++k +Y+Ltd  L ++   L +l+++NP  ++     gdMkL+l++qV
  KOO23369.1 112 KYELIIKTKVKGEYFLTDRQLTKERgGLGCLLRPNPYAQSgrshGGDMKLFLRTQV 167
                 8***********************************8654212168*********9 PP

>> EF-hand_6  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.8   0.0      0.28   6.3e+02       7      23 ..     267     283 ..     266     290 .. 0.85
   2 !   23.1   0.1   1.9e-08   4.2e-05       1      26 [.     305     330 ..     305     336 .. 0.92

  Alignments for each domain:
  == domain 1  score: 0.8 bits;  conditional E-value: 0.28
   EF-hand_6   7 klfDkdgdGkidaeElr 23 
                 +++D +++G++ + E+r
  KOO23369.1 267 RAWDPTNSGSVLKTEFR 283
                 57899**********98 PP

  == domain 2  score: 23.1 bits;  conditional E-value: 1.9e-08
   EF-hand_6   1 elreaFklfDkdgdGkidaeElrkal 26 
                 e++++F+ +Dkd++G i+ +El+ +l
  KOO23369.1 305 EIDAFFDSHDKDKSGVISSNELKTIL 330
                 6889*******************998 PP

>> EF-hand_1  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.3   0.0      0.14   3.2e+02       8      28 ..     268     288 ..     266     289 .. 0.83
   2 !   21.8   0.2   3.9e-08   8.8e-05       1      27 [.     305     331 ..     305     333 .. 0.93

  Alignments for each domain:
  == domain 1  score: 1.3 bits;  conditional E-value: 0.14
                 HHTTTSSSEEEHHHHHHHHHH CS
   EF-hand_1   8 efDkDgdGkIdfeEfkellkk 28 
                   D  ++G + + Ef+  +k+
  KOO23369.1 268 AWDPTNSGSVLKTEFRLRIKA 288
                 67999**********987665 PP

  == domain 2  score: 21.8 bits;  conditional E-value: 3.9e-08
                 HHHHHHHHHTTTSSSEEEHHHHHHHHH CS
   EF-hand_1   1 elkeiFrefDkDgdGkIdfeEfkellk 27 
                 e++ +F+  DkD++G I+ +E+k++l 
  KOO23369.1 305 EIDAFFDSHDKDKSGVISSNELKTILV 331
                 799*********************986 PP

>> EF-hand_7  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.3   0.0   1.2e-07   0.00027      11      69 ..     269     329 ..     260     331 .. 0.86
   2 ?   -1.5   0.0       1.6   3.7e+03      27      55 ..     363     391 ..     344     394 .. 0.70

  Alignments for each domain:
  == domain 1  score: 21.3 bits;  conditional E-value: 1.2e-07
   EF-hand_7  11 lDtdgdgyldkeellrllrkifqga..gegsklsdeelellfkefDtdkdGvisfdEFlkl 69 
                  D  ++g++ k+e++  ++++f+++   e ++l  +e++++f+  D+dk+Gvis +E++++
  KOO23369.1 269 WDPTNSGSVLKTEFRLRIKALFAKHrpKEPFDLETKEIDAFFDSHDKDKSGVISSNELKTI 329
                 68889999*****99777888877788888888889*********************9876 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 1.6
   EF-hand_7  27 llrkifqgagegsklsdeelellfkefDt 55 
                 ++ +  +g +e+ + ++ el +l +e+  
  KOO23369.1 363 VIAAEGEGLEEDANRREAELTRLKREMEA 391
                 44444455588888888889999888854 PP

>> EF-hand_5  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   0.1   1.4e-06    0.0031       1      24 [.     306     329 ..     306     331 .. 0.87

  Alignments for each domain:
  == domain 1  score: 16.9 bits;  conditional E-value: 1.4e-06
                 HHHHHHHH-SS-SSCE-HHHHHHH CS
   EF-hand_5   1 lkdtFqaiDlNgDGkIskeELktl 24 
                 ++++F+  D++++G Is  ELkt+
  KOO23369.1 306 IDAFFDSHDKDKSGVISSNELKTI 329
                 56789999**************94 PP

>> EF-hand_8  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.0       1.3   2.8e+03      32      48 ..     266     282 ..     264     287 .. 0.86
   2 ?   12.0   0.1   6.3e-05      0.14      16      51 ..     292     329 ..     274     333 .. 0.76

  Alignments for each domain:
  == domain 1  score: -1.8 bits;  conditional E-value: 1.3
   EF-hand_8  32 frefDtdgdGkisfeEF 48 
                 +r+ D  ++G + ++EF
  KOO23369.1 266 LRAWDPTNSGSVLKTEF 282
                 57779999****99999 PP

  == domain 2  score: 12.0 bits;  conditional E-value: 6.3e-05
   EF-hand_8  16 ilglkk...glseeevdilfrefDtdgdGkisfeEFcvl 51 
                 + + +k   +l  +e+d+ f+ +D d++G+is +E    
  KOO23369.1 292 K-HRPKepfDLETKEIDAFFDSHDKDKSGVISSNELKTI 329
                 2.55558888999********************998765 PP

>> zf-dskA_traR  Prokaryotic dksA/traR C4-type zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   3.0    0.0002      0.45       1      33 [.      73     105 ..      73     107 .. 0.88

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.0002
  zf-dskA_traR   1 giygsCeeCGEpIpeaR.lralPgarlCveCqek 33 
                   ++ g+C+eCGE  + ++   a  g+  C +Cq+ 
    KOO23369.1  73 RTVGICDECGEASGQPKfFAAF-GVSACYDCQQA 105
                   588**************77777.********986 PP

>> APG6_N  Apg6 coiled-coil region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   5.2    0.0004       0.9      48     102 ..     339     393 ..     296     396 .. 0.80

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.0004
      APG6_N  48 eleeleeeleklekeeeelleeLkelekereeleaelaaleeelealeeeeerfw 102
                  +++ + e++kl++++++ l+e++ + +e e le++ +  e+el +l++e e+ +
  KOO23369.1 339 AIQKEQAEVRKLQSAKATRLREIAVIAAEGEGLEEDANRREAELTRLKREMEADL 393
                 567788999**************************************99988765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (422 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1005  (0.0560544); expected 358.6 (0.02)
Passed bias filter:                      634  (0.0353617); expected 358.6 (0.02)
Passed Vit filter:                        71  (0.00396006); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.49u 0.24s 00:00:00.73 Elapsed: 00:00:00.37
# Mc/sec: 3397.11
//
Query:       KOO23370.1  [L=267]
Description: hypothetical protein Ctob_001011 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (267 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       282  (0.0157287); expected 358.6 (0.02)
Passed bias filter:                      263  (0.014669); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.42u 0.20s 00:00:00.62 Elapsed: 00:00:00.38
# Mc/sec: 2124.59
//
Query:       KOO23371.1  [L=366]
Description: hypothetical protein Ctob_001016 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
  ------ inclusion threshold ------
      0.017   14.9   3.6      0.017   14.9   3.6    3.0  3  Selenoprotein_S  Selenoprotein S (SelS)
        7.9    7.0   8.7         61    4.1   0.1    2.1  2  SOBP             Sine oculis-binding protein


Domain annotation for each model (and alignments):
>> Selenoprotein_S  Selenoprotein S (SelS)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   1.1      0.31   2.8e+03      73     109 ..     140     176 ..     116     183 .. 0.53
   2 ?   -7.9  11.2         2   1.8e+04      83     112 ..     231     260 ..     199     300 .. 0.54
   3 ?   14.9   3.6   1.9e-06     0.017      71     108 ..     320     360 ..     297     363 .. 0.70

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 0.31
  Selenoprotein_S  73 ldpdvvvkrqealeaaRlrmqeeldakaekfkekkkq 109
                      + +++    qe   + +  m ++  a a+k ++ +k+
       KOO23371.1 140 MLVSSRRLLQESTSMLKESMAANEAAAAAKLADALKR 176
                      3333344456666666666666666666666666555 PP

  == domain 2  score: -7.9 bits;  conditional E-value: 2
  Selenoprotein_S  83 ealeaaRlrmqeeldakaekfkekkkqlee 112
                       + +++Rl  q++l  +a++ +++  q+ e
       KOO23371.1 231 AKAAVSRLAEQAKLAQRAAQKADEALQQRE 260
                      334556777777776666655544333222 PP

  == domain 3  score: 14.9 bits;  conditional E-value: 1.9e-06
  Selenoprotein_S  71 aaldpdvvvkr...qealeaaRlrmqeeldakaekfkekkk 108
                      a+++   +v+r   q ale aR rmqeeld + e  +++++
       KOO23371.1 320 ASFEARLEVERealQRALETARTRMQEELDEQLETARNENR 360
                      3455555554333399*****************99888776 PP

>> SOBP  Sine oculis-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.1   0.1    0.0068        61      61     142 ..      66     143 ..      35     177 .. 0.60
   2 ?    3.8   5.5    0.0081        72      88     193 ..     208     317 ..     187     362 .. 0.53

  Alignments for each domain:
  == domain 1  score: 4.1 bits;  conditional E-value: 0.0068
        SOBP  61 aGseaqLitPdlwlsncrsrsaspaskrsesvspepsksaspsssptssnsskplisvassskllaeksqepaslveaplep 142
                 +G   +L++Pd  l n r+  +   + +  ++++++ ++as s   + +  + +l   +++ ++ ++k ++  + ++a l++
  KOO23371.1  66 NG--GKLLAPDFPLGNSRRVLERLLTAKGAESERGAIERASYSRALS-E-LEGSLSIAEERARSFQTKAKHELEDTNAMLVS 143
                 33..59********************999999999999998888773.3.33333333333344444444443433444333 PP

  == domain 2  score: 3.8 bits;  conditional E-value: 0.0081
        SOBP  88 rsesvspepsksaspsssptssnsskplisvassskllaeksqepaslveaplepkkqrkkkpglrkpkqvkagsskssetkagllqkq......qkal 180
                 rs s+  + +++a+ ++ ++s++++ ++ + a++ kl ++  q+++++ +++++ +++ ++ +++r++++++++       ka+  q+       ++  
  KOO23371.1 208 RSASQAVDEAMEATGRAAAESAAAKAAVSRLAEQAKLAQRAAQKADEALQQREHAEAEARQVARQRHEDEMVSKAV--IAAKAEAWQQAtvhawkEARE 304
                 3333333333555555666566677777777777777777777777776666666666666666666655553322..222222322223445554444 PP

        SOBP 181 plsaeleessvpk 193
                 +++ae++ +++ +
  KOO23371.1 305 TVTAEVTAEVTAT 317
                 4444444443333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (366 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2689  (0.14998); expected 358.6 (0.02)
Passed bias filter:                      505  (0.0281667); expected 358.6 (0.02)
Passed Vit filter:                        77  (0.00429472); expected 17.9 (0.001)
Passed Fwd filter:                        23  (0.00128284); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.78u 0.32s 00:00:01.10 Elapsed: 00:00:00.45
# Mc/sec: 2445.30
//
Query:       KOO23372.1  [L=336]
Description: hypothetical protein Ctob_001015 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.3e-22   80.1   5.5    1.8e-12   47.7   1.7    2.6  2  Ank_2     Ankyrin repeats (3 copies)
    5.5e-18   64.5   6.5    1.4e-06   28.5   1.4    4.2  4  Ank       Ankyrin repeat
    1.5e-15   57.0   7.1    1.3e-08   34.9   0.8    4.2  4  Ank_5     Ankyrin repeats (many copies)
    1.6e-15   57.3   5.1    3.9e-10   40.1   0.5    4.0  5  Ank_4     Ankyrin repeats (many copies)
    5.1e-14   51.0   6.3    8.8e-06   25.7   0.2    4.5  4  Ank_3     Ankyrin repeat
    9.8e-13   48.1   0.0    1.7e-12   47.3   0.0    1.3  1  U-box     U-box domain
    1.4e-05   24.8   0.0    2.5e-05   24.0   0.0    1.3  1  zf-Nse    Zinc-finger of the MIZ type in Nse subunit


Domain annotation for each model (and alignments):
>> Ank_2  Ankyrin repeats (3 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.7   1.7   6.9e-16   1.8e-12       2      81 ..      36     126 ..      35     128 .. 0.75
   2 !   41.7   0.1   5.3e-14   1.3e-10      26      82 ..      98     170 ..      91     173 .. 0.83

  Alignments for each domain:
  == domain 1  score: 47.7 bits;  conditional E-value: 6.9e-16
       Ank_2   2 hlAakngnl.elvklLl..egadpnk.ngktaLhyAakngnleivklLleh.......adndgrtpLhyAarsghleivklLlekgadinl 81 
                 +lAak+g+l  l k L   +  ++ +    t+Lh+Aa +g+le++ +Ll         +++  +t+Lh+Aa+  hle+vklLl++ adi++
  KOO23372.1  36 ILAAKDGDLvRLKKSLFvlSPLEAQDaYMDTPLHHAAVRGHLEACVMLLRCepslikaVNKGKNTALHLAASAAHLEVVKLLLDHHADIDA 126
                 567777755444455544433333223557**************99999855667666777777*******99**********9999*987 PP

  == domain 2  score: 41.7 bits;  conditional E-value: 5.3e-14
       Ank_2  26 gktaLhyAakngnleivklLleh...ad...ndgrtpLhyAarsg..........hleivklLlekgadinlk 82 
                 ++taLh+Aa++ +le+vklLl+h   +d    + +tpLhyA+r +          hl +vklL+ +g++++l+
  KOO23372.1  98 KNTALHLAASAAHLEVVKLLLDHhadIDargIEQYTPLHYACRDSatprrgrvapHLAVVKLLVARGSNPDLR 170
                 47********************9866335577799*******99556777899999********999888765 PP

>> Ank  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.3   0.1     7e-05      0.18       3      25 ..      65      86 ..      63      96 .. 0.77
   2 !   28.5   1.4   5.3e-10   1.4e-06       3      30 ..      99     127 ..      98     129 .. 0.94
   3 !   23.4   0.0   2.1e-08   5.5e-05       3      31 ..     132     171 ..     130     172 .. 0.79
   4 ?   -1.2   0.0       1.3   3.3e+03      14      25 ..     200     213 ..     177     218 .. 0.66

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 7e-05
                BBHHHHHHHHTTHHHHHHHHTTT CS
         Ank  3 nTPLHlAatngkkriiklLLhGA 25
                +TPLH Aa +g+++ + +LL ++
  KOO23372.1 65 DTPLHHAAVRGHLEACVMLL-RC 86
                7*****9999**88888888.43 PP

  == domain 2  score: 28.5 bits;  conditional E-value: 5.3e-10
                 BBHHHHHHHHTTHHHHHHHH.TTTSTTCB CS
         Ank   3 nTPLHlAatngkkriiklLL.hGAnlnal 30 
                 nT+LHlAa+ ++++++klLL h A+++a+
  KOO23372.1  99 NTALHLAASAAHLEVVKLLLdHHADIDAR 127
                 8*******************999****98 PP

  == domain 3  score: 23.4 bits;  conditional E-value: 2.1e-08
                 BBHHHHHH......HHTT......HHHHHHHH.TTTSTTCBT CS
         Ank   3 nTPLHlAa......tngk......kriiklLL.hGAnlnald 31 
                 +TPLH+A+      +         + ++klL+ +G+n+++++
  KOO23372.1 132 YTPLHYACrdsatpR--RgrvaphLAVVKLLVaRGSNPDLRT 171
                 8*******6666663..044777788******99****9987 PP

  == domain 4  score: -1.2 bits;  conditional E-value: 1.3
                 T...HHHHHHHHTTT CS
         Ank  14 k...kriiklLLhGA 25 
                 k   +r ++lLL  A
  KOO23372.1 200 KeeyERRLRLLL-NA 213
                 034578999999.44 PP

>> Ank_5  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.7   0.3   9.9e-05      0.25      18      42 ..      66      88 ..      57      95 .. 0.85
   2 !   34.9   0.8   5.1e-12   1.3e-08       1      56 []      83     138 ..      83     138 .. 0.93
   3 !    6.8   0.0    0.0033       8.5      15      26 ..     130     141 ..     125     145 .. 0.80
   4 !   13.0   0.0     4e-05       0.1      28      56 .]     153     181 ..     151     181 .. 0.93

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 9.9e-05
       Ank_5 18 tpLhvAakygaadvvrlLlargadl 42
                tpLh+Aa +g+++ + +Ll  ++ +
  KOO23372.1 66 TPLHHAAVRGHLEACVMLL--RCEP 88
                9******************..6654 PP

  == domain 2  score: 34.9 bits;  conditional E-value: 5.1e-12
       Ank_5   1 LlehgpadvnrldgggntpLhvAakygaadvvrlLlargadlnltdsrGltaldlA 56 
                 Ll++ p  + + ++g+nt+Lh+Aa++ +++vv+lLl+++ad++++  + +t+l++A
  KOO23372.1  83 LLRCEPSLIKAVNKGKNTALHLAASAAHLEVVKLLLDHHADIDARGIEQYTPLHYA 138
                 5666777788899******************************************9 PP

  == domain 3  score: 6.8 bits;  conditional E-value: 0.0033
       Ank_5  15 ggntpLhvAaky 26 
                 + +tpLh+A++ 
  KOO23372.1 130 EQYTPLHYACRD 141
                 568*******86 PP

  == domain 4  score: 13.0 bits;  conditional E-value: 4e-05
       Ank_5  28 aadvvrlLlargadlnltdsrGltaldlA 56 
                 ++ vv+lL+arg++++l++ +G ++ dlA
  KOO23372.1 153 HLAVVKLLVARGSNPDLRTRDGALPRDLA 181
                 788999999******************99 PP

>> Ank_4  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.3   0.1   0.00016      0.41      29      55 .]      59      84 ..      43      84 .. 0.72
   2 !   22.1   0.9   6.3e-08   0.00016       2      45 ..      65     108 ..      64     110 .. 0.83
   3 !   40.1   0.5   1.5e-13   3.9e-10       2      44 ..      99     140 ..      98     151 .. 0.92
   4 ?    4.8   0.0     0.017        44      11      35 ..     151     174 ..     146     181 .. 0.87
   5 ?   -1.9   0.0       2.2   5.7e+03      13      23 ..     203     213 ..     196     225 .. 0.61

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00016
       Ank_4 29 aqdnrsGetalhiAakrgnveilklLl 55
                aq +++ +t+lh+Aa rg++e+  +Ll
  KOO23372.1 59 AQ-DAYMDTPLHHAAVRGHLEACVMLL 84
                45.677778888888888888777775 PP

  == domain 2  score: 22.1 bits;  conditional E-value: 6.3e-08
       Ank_4   2 ltaLhyaaisgrlelvrlLl.ekgad...inaqdnrsGetalhiAakr 45 
                  t+Lh+aa  g+le++  Ll +   +   i a+ n+  +talh Aa+ 
  KOO23372.1  65 DTPLHHAAVRGHLEACVMLLrC---EpslIKAV-NKGKNTALHLAASA 108
                 599************9988843...23358899.***********986 PP

  == domain 3  score: 40.1 bits;  conditional E-value: 1.5e-13
       Ank_4   2 ltaLhyaaisgrlelvrlLlekgadinaqdnrsGetalhiAak 44 
                 +taLh aa++ +le+v+lLl++ adi+a+  +++ t+lh+A++
  KOO23372.1  99 NTALHLAASAAHLEVVKLLLDHHADIDAR-GIEQYTPLHYACR 140
                 69***************************.************5 PP

  == domain 4  score: 4.8 bits;  conditional E-value: 0.017
       Ank_4  11 sgrlelvrlLlekgadinaqdnrsG 35 
                 + +l +v+lL+++g +++ +  r+G
  KOO23372.1 151 APHLAVVKLLVARGSNPDLR-TRDG 174
                 57999************999.7777 PP

  == domain 5  score: -1.9 bits;  conditional E-value: 2.2
       Ank_4  13 rlelvrlLlek 23 
                  ++ +rlLl+ 
  KOO23372.1 203 YERRLRLLLNA 213
                 45566777752 PP

>> Ank_3  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.0   0.1   2.3e-05     0.058       3      25 ..      65      86 ..      63      90 .. 0.89
   2 !   25.7   0.2   3.4e-09   8.8e-06       3      31 .]      99     126 ..      97     126 .. 0.94
   3 !   11.7   0.0   0.00013      0.33       2      29 ..     131     167 ..     130     169 .. 0.68
   4 ?   -2.7   0.0       5.9   1.5e+04      15      23 ..     203     212 ..     196     216 .. 0.58

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 2.3e-05
       Ank_3  3 etpLhlAarsgnleivkfLlenk 25
                 tpLh+Aa  g+le + +Ll+ +
  KOO23372.1 65 DTPLHHAAVRGHLEACVMLLR-C 86
                59*****************99.5 PP

  == domain 2  score: 25.7 bits;  conditional E-value: 3.4e-09
       Ank_3   3 etpLhlAarsgnleivkfLlenkgadvna 31 
                 +t+LhlAa++++le+vk+Ll+ ++ad++a
  KOO23372.1  99 NTALHLAASAAHLEVVKLLLD-HHADIDA 126
                 8********************.9***985 PP

  == domain 3  score: 11.7 bits;  conditional E-value: 0.00013
       Ank_3   2 GetpLhlAarsgnlei..........vkfLlenkgadv 29 
                 ++tpLh+A+r   +++          vk+L+  +g ++
  KOO23372.1 131 QYTPLHYACRDSATPRrgrvaphlavVKLLVA-RGSNP 167
                 79********9998433344444555888877.77766 PP

  == domain 4  score: -2.7 bits;  conditional E-value: 5.9
       Ank_3  15 le.ivkfLle 23 
                 +e ++++Ll+
  KOO23372.1 203 YErRLRLLLN 212
                 5545777766 PP

>> U-box  U-box domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.3   0.0   6.8e-16   1.7e-12       5      66 ..     258     318 ..     254     322 .. 0.95

  Alignments for each domain:
  == domain 1  score: 47.3 bits;  conditional E-value: 6.8e-16
                 GB-TTT-SB-SSEEEETTTEEEEHHHHHHHHTT.SSB-TTT-SB--GGGSEE-HHHHHHHHH CS
       U-box   5 fldpitlelmkdPvilpsgvvvdrstiekhllsrdktdPftrepltqdqlipnlelKekIde 66 
                 +l+pit  l+ dPv + + +v++r +i+++l++ + t+P+t  +l+++ l+pn e+++++++
  KOO23372.1 258 LLCPITHALLVDPVTTCDHHVYERYAITQWLER-HDTSPLTGLHLDSKRLTPNKEVRAAVAK 318
                 89*******************************.************************9986 PP

>> zf-Nse  Zinc-finger of the MIZ type in Nse subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.0   0.0   9.9e-09   2.5e-05      11      48 ..     257     293 ..     253     299 .. 0.85

  Alignments for each domain:
  == domain 1  score: 24.0 bits;  conditional E-value: 9.9e-09
                 XSB-TTTSSB-SSEEEESSS-.-EEEHHHHHHHCTTTS- CS
      zf-Nse  11 slkCPltlqpfeePvtskkCp.HvFEreaIlelikrkkt 48 
                 sl CP+t   +++Pvt  +C  Hv+Er aI++ ++r++t
  KOO23372.1 257 SLLCPITHALLVDPVT--TCDhHVYERYAITQWLERHDT 293
                 788************7..685279**********77665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (336 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       565  (0.0315132); expected 358.6 (0.02)
Passed bias filter:                      481  (0.026828); expected 358.6 (0.02)
Passed Vit filter:                        47  (0.00262145); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.47u 0.25s 00:00:00.72 Elapsed: 00:00:00.41
# Mc/sec: 2447.25
//
Query:       KOO23373.1  [L=515]
Description: hypothetical protein Ctob_001014 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.5e-15   56.5  38.3      0.011   16.7   2.4   10.3 10  SHIPPO-rpt  Sperm-tail PG-rich repeat
  ------ inclusion threshold ------
      0.036   14.0   0.0      0.065   13.2   0.0    1.3  1  CHAD        CHAD domain
      0.081   12.8   0.1       0.33   10.8   0.0    2.1  2  DUF4295     Domain of unknown function (DUF4295)


Domain annotation for each model (and alignments):
>> SHIPPO-rpt  Sperm-tail PG-rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   2.4   1.8e-06     0.011       1      30 [.      40      70 ..      40      71 .. 0.91
   2 ?    4.2   0.3     0.016        96       4      27 ..      83     116 ..      83     119 .. 0.56
   3 ?    1.3   0.0      0.13   7.5e+02       1       9 [.     130     138 ..     130     170 .. 0.80
   4 ?    1.0   0.1      0.16   9.8e+02       2       9 ..     180     187 ..     179     208 .. 0.94
   5 ?    2.9   0.0      0.04   2.4e+02       3      10 ..     222     229 ..     220     252 .. 0.76
   6 !   15.5   0.4   4.2e-06     0.025       2      29 ..     274     303 ..     273     305 .. 0.59
   7 ?    3.5   0.1     0.026   1.5e+02       4      27 ..     317     350 ..     317     353 .. 0.62
   8 !   10.3   0.1   0.00018       1.1       1      11 [.     364     374 ..     364     404 .. 0.77
   9 !   13.1   0.7   2.4e-05      0.14       2      25 ..     414     439 ..     413     447 .. 0.75
  10 !    6.8   0.0    0.0024        14       2      10 ..     459     467 ..     458     478 .. 0.88

  Alignments for each domain:
  == domain 1  score: 16.7 bits;  conditional E-value: 1.8e-06
  SHIPPO-rpt  1 lPGPGtYkpnknvpsn.ksaPkysfGqrkrd 30
                +PGPG+Y+p   ++ + +++P  sf +++++
  KOO23373.1 40 SPGPGAYSPANASTLKaTGKPTSSFTSKTKR 70
                6**********8888888*********9987 PP

  == domain 2  score: 4.2 bits;  conditional E-value: 0.016
  SHIPPO-rpt   4 PGtYkpnk....nvpsnksaPkys.........fGqr 27 
                 PG+Y+p +       s  s++++          fG+r
  KOO23373.1  83 PGSYDPYTlkdlA--ST-SKKSFAksfrsgsggFGTR 116
                 9******988443..44.3444332333555555555 PP

  == domain 3  score: 1.3 bits;  conditional E-value: 0.13
  SHIPPO-rpt   1 lPGPGtYkp 9  
                 +PG G+Y+ 
  KOO23373.1 130 TPGAGAYNG 138
                 7******95 PP

  == domain 4  score: 1.0 bits;  conditional E-value: 0.16
  SHIPPO-rpt   2 PGPGtYkp 9  
                 PG G+Y+p
  KOO23373.1 180 PGAGAYSP 187
                 9*****99 PP

  == domain 5  score: 2.9 bits;  conditional E-value: 0.04
  SHIPPO-rpt   3 GPGtYkpn 10 
                 GPG+Y+  
  KOO23373.1 222 GPGAYESH 229
                 *****865 PP

  == domain 6  score: 15.5 bits;  conditional E-value: 4.2e-06
  SHIPPO-rpt   2 PGPGtYkpnk.nvpsn.ksaPkysfGqrkr 29 
                 PGPG+Y+ nk +++s+  s  +  f ++++
  KOO23373.1 274 PGPGAYESNKsTLNSRpGSGHASAFKSQTK 303
                 **********54443333333333555554 PP

  == domain 7  score: 3.5 bits;  conditional E-value: 0.026
  SHIPPO-rpt   4 PGtYkpnknvpsn.ksaPkys.........fGqr 27 
                 PG+Y+p +n+    +s++++          fG+r
  KOO23373.1 317 PGSYDPYTNMELAkTSKKSFGrsnlagmgdFGTR 350
                 9*****9944444445666555566666666655 PP

  == domain 8  score: 10.3 bits;  conditional E-value: 0.00018
  SHIPPO-rpt   1 lPGPGtYkpnk 11 
                 +PGPG+Y+ + 
  KOO23373.1 364 TPGPGAYNGDL 374
                 7*******886 PP

  == domain 9  score: 13.1 bits;  conditional E-value: 2.4e-05
  SHIPPO-rpt   2 PGPGtYkpnk...nvpsnksaPkysfG 25 
                 PGPG+Y p+    + + + + P+ s+ 
  KOO23373.1 414 PGPGQYAPKFdviQPKLS-QNPAHSMK 439
                 **********98844444.59998865 PP

  == domain 10  score: 6.8 bits;  conditional E-value: 0.0024
  SHIPPO-rpt   2 PGPGtYkpn 10 
                 PGPG+Y+++
  KOO23373.1 459 PGPGAYETE 467
                 9*****976 PP

>> CHAD  CHAD domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.0   1.1e-05     0.065     166     214 ..      17      76 ..       4      78 .. 0.62

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 1.1e-05
                 -----THHHHHHHHHHHHHHHHHH............HHGGGS-H.HHHHHHHHHHHHHHHHH CS
        CHAD 166 adesdeealHelRkaaKrlRYaae............afaplypa.alkallkalkklqevLG 214
                 + ++  ++lH++RkaaK lR+a +            ++ ++  +  + ++  + k+l e LG
  KOO23373.1  17 SGPQARAELHAARKAAKALRMAKSpgpgayspanasTL-KAT-GkPTSSFTSKTKRLVESLG 76 
                 6788899**************98855554444432211.222.1255555555566666666 PP

>> DUF4295  Domain of unknown function (DUF4295)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   5.6e-05      0.33      13      33 ..      27      47 ..      20      48 .. 0.84
   2 ?   -4.0   0.0       2.4   1.4e+04      11      19 ..      97     104 ..      93     107 .. 0.69

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 5.6e-05
     DUF4295 13 sgkkytKvIkmvKspKTGaYt 33
                  +k +K+ +m Ksp  GaY+
  KOO23373.1 27 AARKAAKALRMAKSPGPGAYS 47
                45999***************6 PP

  == domain 2  score: -4.0 bits;  conditional E-value: 2.4
     DUF4295  11 gasgkkytK 19 
                 + s+k+++K
  KOO23373.1  97 T-SKKSFAK 104
                 4.7888888 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (515 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       331  (0.0184617); expected 358.6 (0.02)
Passed bias filter:                      225  (0.0125495); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.49u 0.21s 00:00:00.70 Elapsed: 00:00:00.39
# Mc/sec: 3912.18
//
Query:       KOO23374.1  [L=5921]
Description: e3 ubiquitin-protein ligase rnf213 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.2e-09   37.1   0.2     0.0027   17.2   0.0    3.5  3  AAA_7     P-loop containing dynein motor region
    1.3e-08   35.4   0.1    1.2e-05   25.8   0.0    4.7  5  AAA       ATPase family associated with various cellular acti
    1.6e-07   31.8   0.0    1.1e-06   29.0   0.0    2.4  2  VWA       von Willebrand factor type A domain
    2.9e-07   31.1   0.0    2.4e-06   28.1   0.0    2.8  2  VWA_2     von Willebrand factor type A domain
    0.00014   22.2   0.4       0.54   10.5   0.0    4.1  4  AAA_22    AAA domain
      0.003   17.5   0.1       0.17   11.8   0.0    3.6  2  NACHT     NACHT domain
     0.0036   17.6   0.0       0.65   10.3   0.0    3.7  3  AAA_19    AAA domain
  ------ inclusion threshold ------
       0.13   12.1   0.0         12    5.6   0.0    2.5  2  AAA_11    AAA domain
       0.14   12.0   0.0       0.53   10.2   0.0    1.9  2  ATPase_2  ATPase domain predominantly from Archaea


Domain annotation for each model (and alignments):
>> AAA_7  P-loop containing dynein motor region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.3   0.0    0.0015         3      36      82 ..    1884    1936 ..    1873    1943 .. 0.70
   2 !    8.0   0.0   0.00091       1.8      13      59 ..    2462    2510 ..    2457    2520 .. 0.84
   3 !   17.2   0.0   1.4e-06    0.0027      17     115 ..    3008    3114 ..    2995    3128 .. 0.81

  Alignments for each domain:
  == domain 1  score: 7.3 bits;  conditional E-value: 0.0015
       AAA_7   36 vllvGptGtGKtviikd.llkkldkekylslti.....nfsaqtsanqlqdii 82  
                  ++++Gp+G+GKt  i++ +l+ +++++   + +      fs    +++lq++i
  KOO23374.1 1884 TCVMGPSGSGKTHWIRKrILQWMQEDEARAVCVfsiteAFSLEAVSQKLQRTI 1936
                  6789*************999999977655433211122455555555555555 PP

  == domain 2  score: 8.0 bits;  conditional E-value: 0.00091
       AAA_7   13 lVptvdtvrysyllelllknkkpvllvGptGtGKtviikd..llkkldk 59  
                  +V t d +     ++  ++ + p+++ G+tG++Kt++++   +lk+l++
  KOO23374.1 2462 FVLTLDFTMKMLCMHERIECRVPCIMEGETGVSKTALTRMyfILKNLSS 2510
                  7899999999999************************998655666664 PP

  == domain 3  score: 17.2 bits;  conditional E-value: 1.4e-06
       AAA_7   17 vdtvrysyllelllknkkpvllvGptGtGKtviikdllkkldkek........ylsltinfsaqtsanqlqdiiesklekrrkgvygPpggkklvvF 105 
                  +    + +++  +  ++ p++++Gp G++Kt+ ++ ++++ + ++        ++   ++f++q s +++ + ie+ +++ + +  +  g  ++ vF
  KOO23374.1 3008 TGLKENVFMVVVCTLARIPLMIIGPPGSSKTLAVTVVTQNAKGDQskarsfyrTQKRLLSFHYQCSRRSTSTEIEAVFKRAEDKQQMTHGDTSCFVF 3104
                  55556667777888899**************99999888777554112222113456789************************************* PP

       AAA_7  106 vDDlnmpake 115 
                  +D+  +p+ +
  KOO23374.1 3105 MDEAGLPEEQ 3114
                  ***9999865 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   0.0       5.9   1.2e+04      72     107 ..     448     478 ..     441     494 .. 0.65
   2 ?    1.4   0.0       0.2     4e+02       2      51 ..    1885    1938 ..    1884    1949 .. 0.62
   3 ?    1.3   0.0      0.22   4.4e+02      54     111 ..    2720    2768 ..    2681    2778 .. 0.77
   4 !   25.8   0.0   5.9e-09   1.2e-05       2     123 ..    3028    3152 ..    3027    3160 .. 0.77
   5 ?   -2.6   0.0       3.5   6.9e+03      58      93 ..    4996    5026 ..    4987    5036 .. 0.78

  Alignments for each domain:
  == domain 1  score: -3.4 bits;  conditional E-value: 5.9
                 HHHTTCCCHHHHHHHHHHHHHHHHTTTS.SSTEEEEE CS
         AAA  72 ksrsgseseeeervvnqLlteldgvkkk.eskvivig 107
                 k+       + +rv+n Ll+  d+++ + +  + v+ 
  KOO23374.1 448 KEG------DFSRVQNLLLASADDFQIDlDTSCSVLE 478
                 444......7789************998422233333 PP

  == domain 2  score: 1.4 bits;  conditional E-value: 0.2
                  EEESSTTSSHHHHHHH.HHHHHT....HEEEEEETTTCSSSSTTHHHHHHHHHHH CS
         AAA    2 llyGppGtGKTllaka.vakelg....vefleisgsellskyvgesekkirelfk 51  
                  +++Gp G GKT  ++  + + ++    + ++ +s +e + ++   s+k  r ++k
  KOO23374.1 1885 CVMGPSGSGKTHWIRKrILQWMQedeaRAVCVFSITEAF-SLEAVSQKLQRTILK 1938
                  789********9876514444433333556666666666.455555555555555 PP

  == domain 3  score: 1.3 bits;  conditional E-value: 0.22
                  HHTSTSEEEEEETGGGHHHHHTTCCCHHHHHHHHHHH..HHHHHTTTSSSTEEEEEEESS CS
         AAA   54 kekakpsilfiDEidalaksrsgseseeeervvnqLl..teldgvkkkeskvivigatnr 111 
                  ++ + + ++f+DE+    +            v ++L+  + ldgv+  e +++vi+a+n 
  KOO23374.1 2720 RHRNVKLCIFLDEVNTSSTMG----------VFKELIvdRRLDGVDLPE-NIVVIAACNP 2768
                  444434899999999987777..........777777335789999865.5*******96 PP

  == domain 4  score: 25.8 bits;  conditional E-value: 5.9e-09
                  EEESSTTSSHHHHHHHHHHHHT......HEEEEEETTTCSSS....STTHHHHHHHHHHHHHHHTS......TSEEEEEETGGGHHHHHTTCCCHHH CS
         AAA    2 llyGppGtGKTllakavakelg......vefleisgsellsk....yvgesekkirelfkeakeka......kpsilfiDEidalaksrsgseseee 82  
                  +++GppG  KTl++  v ++++      ++f++++ ++lls         ++ +i+++fk+a+ k+      + + +f+DE+    ++r        
  KOO23374.1 3028 MIIGPPGSSKTLAVTVVTQNAKgdqskaRSFYRTQ-KRLLSFhyqcSRRSTSTEIEAVFKRAEDKQqmthgdTSCFVFMDEAGLPEEQR-------- 3115
                  789*****************954444433343333.233322344477899***********999999***777*******99886666........ PP

                  HHHHHHHHHHHHHTTTSSSTEEEEEEESSGGGSTHHHHSTT CS
         AAA   83 ervvnqLlteldgvkkkeskvivigatnrpdkldpallrgR 123 
                   + +++L   l++  ++ +kv ++++tn+   ld a   +R
  KOO23374.1 3116 -ESLKVLHYYLEDHMSRPAKVGFVAITNHA--LDAAKS-NR 3152
                  .889999999*999999999********84..555555.45 PP

  == domain 5  score: -2.6 bits;  conditional E-value: 3.5
                  TSEEEEEETGGGHHHHHTTCCCHHHHHHHHHHHHHH CS
         AAA   58 kpsilfiDEidalaksrsgseseeeervvnqLltel 93  
                  +ps++f DE++ +++++       ++r ++ Llt+ 
  KOO23374.1 4996 TPSVIFEDELELVVGRD-----PTGTRELAMLLTFT 5026
                  699**********9998.....66667777777665 PP

>> VWA  von Willebrand factor type A domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.0       1.2   2.4e+03      66     110 ..     707     752 ..     703     754 .. 0.78
   2 !   29.0   0.0   5.4e-10   1.1e-06       1     144 [.    2085    2225 ..    2085    2242 .. 0.75

  Alignments for each domain:
  == domain 1  score: -1.4 bits;  conditional E-value: 1.2
                 HHHHTG.SGGGGSSC-HHHHHHHHHHHHHHHHGTSSTTSEEEEEEE CS
         VWA  66 salnnl.kysgggttntgkalkyaleklfkssagaRenakkviill 110
                 + +++l ++   g+++++ al+++l+ +++++++ R ++++  ++l
  KOO23374.1 707 DFVERLsRVLQLGSSQVDFALQKLLQGMLSARNEPRVHYQRANVVL 752
                 5566665555556666999***************999999988887 PP

  == domain 2  score: 29.0 bits;  conditional E-value: 5.4e-10
                  EEEEEEE-STTSCHHHHHHHHHHHHHHHHHHTBTTTTEEEEEEEESSS..EEEE.EETTSHCHHHHHHHHHHTGSGGGGSSC-HHHHHHHHHHHHHH CS
         VWA    1 DivfvlDgSgsmgeenfekvkefikklveklevgpegtrvglvqfsse..vkte.fslndysskeellsalnnlkysgggttntgkalkyaleklfk 94  
                  D++fvlD+Sgsm +  fe+ ++++ +l +     ++ +rvg+v f++     ++ ++l+  +  + + ++l    ++++g t++  a+  a++ l +
  KOO23374.1 2085 DVIFVLDASGSMAGAPFETCRRCLLELCRGKL--QPVDRVGVVVFNGRilLNVQpAPLSARH-LANIETQLVF--VQPSGGTDLWGAMFDAADLLCS 2176
                  9**************************98666..6*************66444445665533.3444444444..4555555599999999995555 PP

                  HHGTSSTTSEEEEEEEESS--CSS...HTHHHHHHHHGCTEEEEEEEESSSHH CS
         VWA   95 ssagaRenakkviilltdGksndg...dpkeaaneakeqgikvfavGvgnade 144 
                     +     ++ ++ ltdG+s+++     +e ++++ +++i+v ++ ++  d 
  KOO23374.1 2177 LPDR----NPSWMVSLTDGHSEGEnmqACTERLRKLDASNINVLSITINLQDS 2225
                  5444....6************88547778888888889999999999944333 PP

>> VWA_2  von Willebrand factor type A domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.0       6.4   1.3e+04      63      94 ..     709     744 ..     706     753 .. 0.66
   2 !   28.1   0.0   1.2e-09   2.4e-06       1     107 []    2086    2192 ..    2086    2192 .. 0.86

  Alignments for each domain:
  == domain 1  score: -3.1 bits;  conditional E-value: 6.4
       VWA_2  63 lnalrnleakgggtnlaaaLqlark.alkkrr....k 94 
                  ++l ++ +  g ++++ aLq++ + +l++r+     
  KOO23374.1 709 VERLSRVLQL-GSSQVDFALQKLLQgMLSARNeprvH 744
                 5667777776.999******99988466665555542 PP

  == domain 2  score: 28.1 bits;  conditional E-value: 1.2e-09
       VWA_2    1 lvfvlDtSgSmrngdygptrleaakdaveallk.sl.pgdrvglvtfsdgpevlipl...t.kdkakilnalrnleakgggtnlaaaLqlarkalkk 91  
                  ++fvlD SgSm++       +e+ ++ + +l+  +l p drvg+v+f+++  + +++   + ++ a i++ l  ++++ ggt+l  a+  a ++l +
  KOO23374.1 2086 VIFVLDASGSMAGA-----PFETCRRCLLELCRgKLqPVDRVGVVVFNGRILLNVQPaplSaRHLANIETQLVFVQPS-GGTDLWGAMFDAADLLCS 2176
                  79*********999.....8*************74447************9777766333468999999999999995.**************9955 PP

       VWA_2   92 rrkgekrvivlitDge 107 
                   +  +++ +v +tDg+
  KOO23374.1 2177 LPDRNPSWMVSLTDGH 2192
                  5556699999999995 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.1         2   4.1e+03      19      63 ..    1773    1823 ..    1773    1843 .. 0.79
   2 !   10.5   0.0   0.00027      0.54       7      70 ..    1883    1942 ..    1879    1975 .. 0.67
   3 ?   -2.5   0.0       2.9   5.8e+03      11      26 ..    2488    2503 ..    2485    2527 .. 0.84
   4 !    6.4   0.0    0.0053        10       8      90 ..    3027    3133 ..    3024    3143 .. 0.72

  Alignments for each domain:
  == domain 1  score: -2.0 bits;  conditional E-value: 2
      AAA_22   19 Ttllrrlleqldeeakaee......erpevvfvtlpsstsskdllrellra 63  
                  Tt lr+l   ld++ +++       ++  +v v++ ++t ++ llr+ll  
  KOO23374.1 1773 TTHLRTLETFLDRVRHHAAtdtsagRCFVLVQVEALAPTAQQALLRHLLAS 1823
                  677888888898888888889997666666688888888999999988865 PP

  == domain 2  score: 10.5 bits;  conditional E-value: 0.00027
      AAA_22    7 ilvvtGesGtGKTtllr.rlleqldeeakaeeerpevv.fvtlpsstsskdllrellralglelka 70  
                  +++v+G+sG+GKT+ +r r+l++ +e+      +++ v  + +++  s++ + ++l r +  e+++
  KOO23374.1 1883 VTCVMGPSGSGKTHWIRkRILQWMQED------EARAVcVFSITEAFSLEAVSQKLQRTILKEGSS 1942
                  789**********76651677777655......444444555566666666666666666555555 PP

  == domain 3  score: -2.5 bits;  conditional E-value: 2.9
      AAA_22   11 tGesGtGKTtllrrll 26  
                   Ge+G+ KT l r+++
  KOO23374.1 2488 EGETGVSKTALTRMYF 2503
                  59***********997 PP

  == domain 4  score: 6.4 bits;  conditional E-value: 0.0053
      AAA_22    8 lvvtGesGtGKTtllrrlleqldeeakaee....erpevv..fvtlpsstsskdllrellralglelka..................erlsseelle 80  
                  l+++G++G+ KT+ +  ++++++ +++ ++     +++++  +++++  ++s+++   + ra + ++ +                  +r s++ l  
  KOO23374.1 3027 LMIIGPPGSSKTLAVTVVTQNAKGDQSKARsfyrTQKRLLsfHYQCSRRSTSTEIEAVFKRAEDKQQMThgdtscfvfmdeaglpeeQRESLKVLHY 3123
                  78*******************9888888889*9955555567********99999555555444444446777777777777776655555555556 PP

      AAA_22   81 aleqalrara 90  
                  +le+++++ a
  KOO23374.1 3124 YLEDHMSRPA 3133
                  6666666655 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.8   0.0   8.6e-05      0.17       2      40 ..    1883    1917 ..    1882    1950 .. 0.70
   2 ?    0.7   0.0      0.22   4.4e+02       3      49 ..    3027    3079 ..    3026    3093 .. 0.68

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 8.6e-05
                  CEEEEC-TTTCHHHHHHHHHHHHCTS-SCCCC-SEEEEE CS
       NACHT    2 lvilqGeaGsGKTtLlqklalawaegklpqgafklvFfl 40  
                  + ++ G++GsGKT++++k +l+w +++  +     v ++
  KOO23374.1 1883 VTCVMGPSGSGKTHWIRKRILQWMQEDEARA----VCVF 1917
                  6799*********************996552....2222 PP

  == domain 2  score: 0.7 bits;  conditional E-value: 0.22
                  EEEEC-TTTCHHHHHHHHHHHHCTS-SCCCC......-SEEEEEETTTTTTS- CS
       NACHT    3 vilqGeaGsGKTtLlqklalawaegklpqga......fklvFflslrelsrsg 49  
                  +++ G++Gs KT  +  + + ++ ++ ++          l+F+ +++++s+s+
  KOO23374.1 3027 LMIIGPPGSSKTLAVTVVTQNAKGDQSKARSfyrtqkRLLSFHYQCSRRSTST 3079
                  6899*******987777777666666555434444445667777777766665 PP

>> AAA_19  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.3   0.0   0.00033      0.65      12      52 ..    1883    1921 ..    1877    1998 .. 0.76
   2 ?    2.2   0.0      0.11   2.1e+02       8      35 ..    3022    3049 ..    3017    3072 .. 0.81
   3 ?   -1.8   0.0       1.8   3.5e+03      32      78 ..    3122    3216 ..    3117    3329 .. 0.55

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.00033
      AAA_19   12 vllvtaGpGtGKTrvlkhivallvelggvkpeeillvaftg 52  
                  v +v+++ G+GKT+ +++++  + ++ +   + + + + t+
  KOO23374.1 1883 VTCVMGPSGSGKTHWIRKRILQWMQEDEA--RAVCVFSITE 1921
                  789****************9988888865..6666666665 PP

  == domain 2  score: 2.2 bits;  conditional E-value: 0.11
      AAA_19    8 lkekvllvtaGpGtGKTrvlkhivallv 35  
                  l++ +l+++++pG+ KT  ++ + + ++
  KOO23374.1 3022 LARIPLMIIGPPGSSKTLAVTVVTQNAK 3049
                  667789***********99988776655 PP

  == domain 3  score: -1.8 bits;  conditional E-value: 1.8
      AAA_19   32 allvelggvkpeeillvaftgrAakelrerlaalgaeatTiHrlal................................................l 78  
                  ++++e +   p+++  va t++A +  + +  a++++a+  Hr  +                                                l
  KOO23374.1 3122 HYYLEDHMSRPAKVGFVAITNHALDAAKSNRCAILLRAEPDHRELMqicigglgseaeqrrllaqtvvglderlpdvldrlclayqdlmreereL 3216
                  55666666778999999999999998888766777775555543233444444444444444444443333455555555555555555544440 PP

>> AAA_11  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.6   0.0    0.0059        12       8      43 ..    1872    1907 ..    1866    1942 .. 0.75
   2 ?    3.4   0.0     0.027        54      21      42 ..    3028    3049 ..    3019    3080 .. 0.74

  Alignments for each domain:
  == domain 1  score: 5.6 bits;  conditional E-value: 0.0059
      AAA_11    8 eaiksalseseitliqGPPGtgKTktivellsqlls 43  
                  +++   +  +++t++ GP G+gKT+ i + + q ++
  KOO23374.1 1872 KWVVDGMDFRAVTCVMGPSGSGKTHWIRKRILQWMQ 1907
                  555556667789***************999988853 PP

  == domain 2  score: 3.4 bits;  conditional E-value: 0.027
      AAA_11   21 liqGPPGtgKTktivellsqll 42  
                  +i GPPG+ KT +++ + +++ 
  KOO23374.1 3028 MIIGPPGSSKTLAVTVVTQNAK 3049
                  899********99988888884 PP

>> ATPase_2  ATPase domain predominantly from Archaea
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.0   0.00026      0.53      20      68 ..    1881    1930 ..    1868    1980 .. 0.64
   2 ?   -2.6   0.0         2   4.1e+03      22      68 ..    3026    3073 ..    3023    3097 .. 0.75

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.00026
    ATPase_2   20 neiyfiYGpegsGKtaLlkeiienl.edkdkyviyyialreesiskldef 68  
                  + +  + Gp gsGKt ++++ i +  ++ + + + ++++ e ++ ++ + 
  KOO23374.1 1881 RAVTCVMGPSGSGKTHWIRKRILQWmQEDEARAVCVFSITEAFSLEAVSQ 1930
                  568899************98776664666778888888877766544333 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 2
    ATPase_2   22 iyfiYGpegsGKtaLlkeiienl.edkdkyviyyialreesiskldef 68  
                  +++i Gp gs Kt  +  + +n   d++k + +y   ++  + +++ +
  KOO23374.1 3026 PLMIIGPPGSSKTLAVTVVTQNAkGDQSKARSFYRTQKRLLSFHYQCS 3073
                  78999********99999999985677889999987777666666554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (5921 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       683  (0.0380947); expected 358.6 (0.02)
Passed bias filter:                      495  (0.0276089); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 2.08u 0.35s 00:00:02.43 Elapsed: 00:00:00.61
# Mc/sec: 29403.18
//
Query:       KOO23375.1  [L=314]
Description: hypothetical protein Ctob_001017, partial [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (314 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1426  (0.0795359); expected 358.6 (0.02)
Passed bias filter:                      776  (0.0432818); expected 358.6 (0.02)
Passed Vit filter:                        60  (0.00334653); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.51u 0.28s 00:00:00.79 Elapsed: 00:00:00.42
# Mc/sec: 2264.00
//
Query:       KOO23376.1  [L=475]
Description: guanylate-binding n-terminal domain containing protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    9.6e-64  215.1   0.0    1.2e-63  214.8   0.0    1.1  1  GBP       Guanylate-binding protein, N-terminal domain
    6.9e-12   45.4   0.0    9.8e-12   44.9   0.0    1.2  1  GBP_C     Guanylate-binding protein, C-terminal domain
  ------ inclusion threshold ------
      0.051   11.7   0.0      0.078   11.1   0.0    1.2  1  RHD3      Root hair defective 3 GTP-binding protein (RHD3)


Domain annotation for each model (and alignments):
>> GBP  Guanylate-binding protein, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  214.8   0.0     2e-67   1.2e-63       2     256 ..      13     282 ..      12     286 .. 0.90

  Alignments for each domain:
  == domain 1  score: 214.8 bits;  conditional E-value: 2e-67
                 SEEEE-HHHHHHHCTTTSBEEEEEEEEBTTSSHHHHHHHHHT.BSSSSESSSCSSST-SSEEEESCE.....-SSSTCEEEEEEEEECBTTTTTSSHHH CS
         GBP   2 eslelneealeileaidqkvvvvaivGlyRkGksfLlnklar.kkkGFslrstvesetkGiliWcep.....hpkkekvalvLlDteGlgDveksdvkd 94 
                 ++l++ eea + l+++  +v vva++G+yR+Gks++ln+la+   +GF ++ +v+++tkGi++W  p     +  +  + l+LlDteGl+ + +++   
  KOO23376.1  13 KRLVVTEEARAYLSQVSGTVGVVAVAGVYRTGKSYILNQLAGtTGSGFGVGNSVQAKTKGIWLWGAPlrlapT-PGAPQNLLLLDTEGLQSIAQTE-GH 109
                 57999************************************93469*********************999533.3566789**********87755.56 PP

                 HHHHHHHHHHH-SEEEEEEESSSSHHHHHHHHHHHHHHHHHHHT......HHHHCCHHCSSTTCEEEEEEEECESSTT.TSTSCHHHHHHHHHHHTCCH CS
         GBP  95 datiFaLavllssvfvYnssqtiqedaleqLqlvtEltelirak......edrvadeeefvkfFpslvflvRDfslel.eaegklltedeyLekrLklk 186
                 da+iF La+ll+s fvYns + i++ a++qL lv  lt++ir++        r   ++  ++fFp++ +l+RDf lel + +g +lt+d yLe+ L+  
  KOO23376.1 110 DAKIFCLAILLASAFVYNSEKAINNAAIDQLSLVAQLTQRIRVHaegeaaAARAGGADALAQFFPRFTWLLRDFQLELlDGDGAALTPDAYLESCLQPA 208
                 89*****************************************99777666677778999*****************6378999*************** PP

                 CSSSHHHHHHHHHHHHHHHHESEEEEEEEE-SSHHHHC....STCGCSCBGGGS-HHHHHHHHHHHHHHHSCCS CS
         GBP 187 kgqdeklqkanllRkcirkfFpkrkcFvldrPglkkal....nakleelkedeldeeFkkqlkelvsyllsesl 256
                 kg+++ +q++n +R  ir++F++r+c  l++P+l  al    ++ l++ +++ l+ +F++ +++l ++l++ + 
  KOO23376.1 209 KGTSAAIQEQNATRAAIRTLFTERSCIALPHPTLGTALppsaLKALDKTPLSALNADFVSGVQQLKRRLFEGAR 282
                 *********************************9998822224579***********************99665 PP

>> GBP_C  Guanylate-binding protein, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.9   0.0   1.6e-15   9.8e-12       1      56 [.     289     344 ..     289     401 .. 0.87

  Alignments for each domain:
  == domain 1  score: 44.9 bits;  conditional E-value: 1.6e-15
       GBP_C   1 ggitvtGkrLasLvqtYvdaInsGavPclenavlalaqiEnsaAvqkAiahYeeqm 56 
                 gg  +tG+ L +L+ +Y +aIn Ga+P+++ a+ a+ ++E+++A ++A+  Y    
  KOO23376.1 289 GGPALTGRTLLQLAGSYCEAINAGALPTISTAWSAVINLECQRALDEAARLYVDGA 344
                 7889**********************************************997655 PP

>> RHD3  Root hair defective 3 GTP-binding protein (RHD3)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   1.3e-05     0.078       5      57 ..      42      99 ..      38     112 .. 0.78

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 1.3e-05
                TSSHHHHHHHHS--------T.TS------SEEEEE-S-EE....--SSEEEEEEEE- CS
        RHD3  5 StGKSTLLNhLFgTnFsvmda.seRqqTTKGiWlakaknvg....ksepnilvmDvEG 57
                 tGKS +LN+L gT  s     +  q  TKGiWl  a           +n l +D EG
  KOO23376.1 42 RTGKSYILNQLAGTTGSGFGVgNSVQAKTKGIWLWGAPLRLaptpGAPQNLLLLDTEG 99
                69**************999997777888*****9765543334445566777777777 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (475 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       357  (0.0199119); expected 358.6 (0.02)
Passed bias filter:                      304  (0.0169558); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.51u 0.24s 00:00:00.75 Elapsed: 00:00:00.41
# Mc/sec: 3496.82
//
Query:       KOO23377.1  [L=368]
Description: hypothetical protein Ctob_004747 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    8.2e-05   22.1   0.0    0.00013   21.5   0.0    1.2  1  Pkinase   Protein kinase domain


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.5   0.0   7.2e-09   0.00013     176     258 ..       7      75 ..       3      79 .. 0.74

  Alignments for each domain:
  == domain 1  score: 21.5 bits;  conditional E-value: 7.2e-09
                 HHHHHHHHHHHHHHHHHSS-STTTSSHHHHHHHHHHTHHHHHHHCTSHH...HHHTTS-HHHHHHHHHHT-SSGCCSTTHHHH CS
     Pkinase 176 kkvDvWslGvilyelltgkppfsgekgkekvekeldqlekilkilgetkeklpeaseiseeakdllkkllkkdpkkRltaeel 258
                 k++D+WslG +l+ +l+g+ppf+++ + +  ++ l      ++         ++   ++e ++  l  +l+  p  R++a+ +
  KOO23377.1   7 KAADIWSLGTLLLAMLMGSPPFASSVEGT--KEGLS-----AQ-------VCEQLGVLPERMRTALVAMLQPAPAARPSAAAV 75 
                 689********************222222..22222.....22.......335566789999999999999999999998766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (368 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       282  (0.0157287); expected 358.6 (0.02)
Passed bias filter:                      192  (0.0107089); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.22s 00:00:00.65 Elapsed: 00:00:00.38
# Mc/sec: 2876.21
//
Query:       KOO23378.1  [L=339]
Description: hypothetical protein Ctob_004743 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
  ------ inclusion threshold ------
       0.47   10.7   6.3       0.98    9.7   0.6    3.4  3  DUF1811        Protein of unknown function (DUF1811)
        5.2    6.6  10.3      0.077   12.6   3.1    1.5  2  TMCO5          TMCO5 family
        9.1    5.6  13.8       0.18   11.1   5.7    2.1  2  GAS            Growth-arrest specific micro-tubule binding


Domain annotation for each model (and alignments):
>> DUF1811  Protein of unknown function (DUF1811)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.4   0.3      0.13   7.8e+02       8      29 ..     227     248 ..     224     267 .. 0.79
   2 ?    9.7   0.6   0.00016      0.98       8      32 ..     265     289 ..     258     299 .. 0.86
   3 ?    1.7   0.0     0.051   3.1e+02      13      46 ..     294     327 ..     290     334 .. 0.89

  Alignments for each domain:
  == domain 1  score: 0.4 bits;  conditional E-value: 0.13
                 HHHHHHHHHHHHHHHHHHHHTT CS
     DUF1811   8 eeeLkqeiaklkekarkaeqlg 29 
                 ++eL++ +++l+ + ++ae  +
  KOO23378.1 227 SSELRTALHALQAERERAEAAE 248
                 5799********9999999754 PP

  == domain 2  score: 9.7 bits;  conditional E-value: 0.00016
                 HHHHHHHHHHHHHHHHHHHHTT-HH CS
     DUF1811   8 eeeLkqeiaklkekarkaeqlgivn 32 
                  e L++e+++l+e+a+ aeq+g  +
  KOO23378.1 265 AEVLQREVQRLRERAESAEQHGARS 289
                 5669******************866 PP

  == domain 3  score: 1.7 bits;  conditional E-value: 0.051
                 HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHH CS
     DUF1811  13 qeiaklkekarkaeqlgivnelavlerkialAks 46 
                 + +++l+ + rk +++ +  e  +++ +  +A s
  KOO23378.1 294 TIVQQLQARLRKSDERSRQGEALIHRLRSFIAAS 327
                 56899********************999999987 PP

>> TMCO5  TMCO5 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.7   0.7       1.2   7.1e+03      45      59 ..      19      33 ..       6      48 .. 0.38
   2 ?   12.6   3.1   1.3e-05     0.077      59     139 ..     244     322 ..     219     328 .. 0.77

  Alignments for each domain:
  == domain 1  score: -3.7 bits;  conditional E-value: 1.2
       TMCO5 45 sllereedeeenfse 59
                ++ +++e e  + +e
  KOO23378.1 19 EASRQREAEAATTAE 33
                222222222222222 PP

  == domain 2  score: 12.6 bits;  conditional E-value: 1.3e-05
       TMCO5  59 enekedalkeLeletaklekkneiLlkevveLqkkisrkeskqddleketlkqkleelkvklqkseescaeqekelakvee 139
                 ++  e++l  + +  a l+++ e+L +ev  L+++ + +e++  ++    ++  +++l+++l ks+e   + e  + ++ +
  KOO23378.1 244 AEAAERDLAAVREAHAVLQREAEVLQREVQRLRERAESAEQHGARSSG--QETIVQQLQARLRKSDERSRQGEALIHRLRS 322
                 2334555555666699************************77664444..689999*************999999999877 PP

>> GAS  Growth-arrest specific micro-tubule binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   1.1      0.33     2e+03      76      99 ..      18      41 ..       4      49 .. 0.35
   2 ?   11.1   5.7   3.1e-05      0.18      86     146 ..     236     296 ..     220     325 .. 0.55

  Alignments for each domain:
  == domain 1  score: -2.0 bits;  conditional E-value: 0.33
         GAS 76 qlknyekdkqslknlkarlkelek 99
                + +  +++ ++ + +++  +++e+
  KOO23378.1 18 AEASRQREAEAATTAERAARQAEQ 41
                112222222222222222333333 PP

  == domain 2  score: 11.1 bits;  conditional E-value: 3.1e-05
         GAS  86 slknlkarlkelekelkdlkwehevleqrfekvekerdelykkfeaaiqevqqktglknll 146
                 +l++ ++r + +e+ l ++++ h vl+ + e +++e ++l+++ e+a q+    +g + ++
  KOO23378.1 236 ALQAERERAEAAERDLAAVREAHAVLQREAEVLQREVQRLRERAESAEQHGARSSGQETIV 296
                 4555555555555555555556666666666666666666555555544444444444433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (339 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2210  (0.123264); expected 358.6 (0.02)
Passed bias filter:                      655  (0.036533); expected 358.6 (0.02)
Passed Vit filter:                       101  (0.00563333); expected 17.9 (0.001)
Passed Fwd filter:                        31  (0.00172904); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.71u 0.27s 00:00:00.98 Elapsed: 00:00:00.40
# Mc/sec: 2533.77
//
Query:       KOO23379.1  [L=1012]
Description: ubiquitin-like modifier-activating enzyme 1 isoform 2 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.3e-94  314.8   0.0    9.8e-69  231.4   0.0    3.0  2  ThiF             ThiF family
    9.3e-64  215.8   0.0    1.2e-63  215.3   0.0    1.2  1  UBA_e1_thiolCys  Ubiquitin-activating enzyme active site
    1.3e-15   57.4   0.0    2.1e-15   56.7   0.0    1.4  1  E1_FCCH          Ubiquitin-activating enzyme E1 FCCH domain
    8.9e-15   55.2   0.0    1.9e-14   54.1   0.0    1.6  1  E1_UFD           Ubiquitin fold domain
  ------ inclusion threshold ------
      0.027   14.5   0.2       0.82    9.7   0.0    2.4  2  Shikimate_DH     Shikimate / quinate 5-dehydrogenase
      0.077   12.4   0.0        9.9    5.5   0.0    2.3  2  2-Hacid_dh_C     D-isomer specific 2-hydroxyacid dehydrogenas


Domain annotation for each model (and alignments):
>> ThiF  ThiF family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   77.7   0.0   2.8e-25   8.4e-22       1     225 [.      28     365 ..      28     377 .. 0.66
   2 !  231.4   0.0   3.3e-72   9.8e-69       1     236 [.     385     891 ..     385     896 .. 0.98

  Alignments for each domain:
  == domain 1  score: 77.7 bits;  conditional E-value: 2.8e-25
                 THHHHHHHHHHHHHHHHTSEEEEE--SHHHHHHHHHHHHHTTTEEEEEESSB--GGGGGTBTTS-GGGTTSBHHHHHHHHHHHT-TTSEEEEEES-C.. CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.. RF
        ThiF   1 ysrqlallgedgqekLrdskvllvGaGglGsellknLalsGvgkltlvDnDkielsNlnRqflfreediGkpKaevaaealqeinpdveveavteri.. 97 
                 ysrql+++g++ q+ L++s vll+G+ glG e++knL+l+Gv+k+++ D+ + ++s+l+  fl +e d+G  ++  aae+l+ +np+v+v+++  +   
  KOO23379.1  28 YSRQLYVMGHAAQRSLAASAVLLIGLSGLGAEVAKNLVLAGVSKVDVYDDTVTSFSDLSSNFLLEEPDVGDLRSRRAAERLAPLNPYVHVRTLAVSPvr 126
                 89*****************************************************************************************99877646 PP

                 ...............CGCCS-HHHHTT-SEEEEESSSHHHHHHHHHHHHHHT..............................................- CS
                 ...............xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..............................................x RF
        ThiF  98 ...............tdetvleellesvDlVvdalDniearrlvnracvkkg..............................................i 135
                                t+++ +  l + + +Vvd  D  e ++++ + +++ +                                              i
  KOO23379.1 127 epdlakytaivaidrTQQE-QLALSRAAPFVVDDPDGEEPKHALLEHVASAEeadvtcipeqphgledgnivrleevegmpslcsagrtfavrvrsrhI 224
                 6666666666555433322.3355566666666666655555555555522244555555555555555555555555544444444444444443330 PP

                 EEEEEEEETTEEEEEEEE...................................................ECCS-ECTSS-TGGS.EECCCCEEHHH... CS
                 xxxxxxxxxxxxxxxxxx...................................................xxxxxxxxxxxxxxxxxxxxxxxxxxx... RF
        ThiF 136 plieagtlgfegqvvvii...................................................pgktgcyeCldpsstedptekkvplct... 180
                                  +                                                   +   +c+ C d                   
  KOO23379.1 225 -----------------VsigdtrdggtylsggrlvqvkqprtlrfepldvatrapvmlstgmdapkrlRTAHACFSCAD---------------Aleg 291
                 .................033333333333333333333344444444444444444444444444332225556666666...............0444 PP

                 .................................HHHCTE-B-HHHHHHHHHHHHHHHHHHHTTBCGGGCCEEEECCTT CS
                 .................................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        ThiF 181 .................................siagnipaiatttavvaglaalellkllsgkeklenslltqvdll 225
                                                  ++   + +++++ a+++g+aa+e+lk++ ++ +  +++l +vd+ 
  KOO23379.1 292 andavealelairssgllaegdmqlgvvadfarGA---SGSLSPMAAFLGGIAAQEVLKAVTHRFMPLQQFL-YVDGT 365
                 44444444456667777777777777666644444...559********************99998888888.77776 PP

  == domain 2  score: 231.4 bits;  conditional E-value: 3.3e-72
                 THHHHHHHHHHHHHHHHTSEEEEE--SHHHHHHHHHHHHHTTT.....EEEEEESSB--GGGGGTBTTS-GGGTTSBHHHHHHHHHHHT-TTSEEEEEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        ThiF   1 ysrqlallgedgqekLrdskvllvGaGglGsellknLalsGvg.....kltlvDnDkielsNlnRqflfreediGkpKaevaaealqeinpdveveavt 94 
                 y+ q+a+lg+   e+L + k+++vGaG++G+ellk Lal+Gvg     +++++D+D+ie sNlnRqflfr++d+GkpK+++aaea++++np+++v+a+t
  KOO23379.1 385 YDGQRAVLGQPLIEALGALKYFIVGAGAIGCELLKCLALMGVGcgakgHVHVTDMDTIERSNLNRQFLFRPSDVGKPKSTCAAEAVRRMNPQLHVTAYT 483
                 78899********************************************************************************************** PP

                 S-CCGCC..S-HHHHTT-SEEEEESSSHHHHHHHHHHHHHHT-EEEEEEEETTEEEEEEEEECCS-ECTSS-TGGS.EECCCCEEHHH........... CS
                 xxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx........... RF
        ThiF  95 eritdet..vleellesvDlVvdalDniearrlvnracvkkgiplieagtlgfegqvvviipgktgcyeCldpsstedptekkvplct........... 180
                 er+++e+  + e++++s+D V++alDn++ar+ v+r cv++++pl+e+gt+g++g+++vi+pg ++ y  +      dp+e ++p+ct           
  KOO23379.1 484 ERVGEESgvFDEHFWHSLDGVANALDNVQARLFVDRCCVEHALPLLESGTSGTKGNTQVILPGLSESYGSS-----SDPPEPSIPVCTlksfpylieht 577
                 *****888889*************************************************98666666555.....89********************* PP

                 ................................................................................................... CS
                 ................................................................................................... RF
        ThiF 181 ................................................................................................... 180
                                                                                                                    
  KOO23379.1 578 lqwardafegefshapdavnrwlerssyledvqrdspdelskaveavyesllerpaahslatdcavwalrrfdkwfvgsirallkrfpadhltesgepf 676
                 *************************************************************************************************** PP

                 ................................................................................................... CS
                 ................................................................................................... RF
        ThiF 181 ................................................................................................... 180
                                                                                                                    
  KOO23379.1 677 wsgtrrrptvkpfdmsdethvafvlaaaklrattlgfgplsddqlaaslqgavtvaasgtkedveaaddaepvaateaearalrergpsptaqrrlerm 775
                 *************************************************************************************************** PP

                 ...........................................................HHHCT.E-B-HHHHHHHHHHHHHHHHHHHTTBCGGGCCEE CS
                 ...........................................................xxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        ThiF 181 ...........................................................siagn.ipaiatttavvaglaalellkllsgkeklensll 219
                                                                             iag+ +paiattta v gl +lellkl ++  ++ ++++
  KOO23379.1 776 qselegqngkalrarraelqasvqafekdddshmafvtaasnlraanyhippadrhrskLIAGRiVPAIATTTACVVGLSCLELLKLAQKMGNIGDYRN 874
                 ****************************************************************************************99999999*** PP

                 EECCTTTTEEEEECCEE CS
                 xxxxxxxxxxxxxxxxx RF
        ThiF 220 tqvdllesrfenveler 236
                  +++l+++   + e+ +
  KOO23379.1 875 GFLNLALPLVAFSEPSP 891
                 ******99999988865 PP

>> UBA_e1_thiolCys  Ubiquitin-activating enzyme active site
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  215.3   0.0   4.2e-67   1.2e-63       1     252 []     571     834 ..     571     834 .. 0.87

  Alignments for each domain:
  == domain 1  score: 215.3 bits;  conditional E-value: 4.2e-67
  UBA_e1_thiolCys   1 PneieHtieWArdkFeglFekkpeevnkflkdkekfleelekekeeekletlekvlkllvkerpktf...edCvkwArekfeklFnnkikqLly 91 
                      P+ ieHt++WArd Feg F+++p+ vn+ l+  +++le +++++ +e  +++e v+++l  erp      +dC  wA+++f k F  +i+ Ll+
       KOO23379.1 571 PYLIEHTLQWARDAFEGEFSHAPDAVNRWLER-SSYLEDVQRDSPDELSKAVEAVYESL-LERPAAHslaTDCAVWALRRFDKWFVGSIRALLK 662
                      9*****************************75.9**************9********99.66665554569*********************** PP

  UBA_e1_thiolCys  92 nfPkdsktsdGapFWsgpKraPkplefdlenelhleFvvaaanLraqvygikgerdeeaiakllskvkvpefkpkekvkia.......vsdeea 178
                      +fP+d+ t++G+pFWsg++r P+   fd+++e+h+ Fv+aaa+Lra+++g  + +d +  a+l   v+v +   ke+v++a       +     
       KOO23379.1 663 RFPADHLTESGEPFWSGTRRRPTVKPFDMSDETHVAFVLAAAKLRATTLGFGPLSDDQLAASLQGAVTVAASGTKEDVEAAddaepvaA----- 751
                      ***************************************************99988888888888999999999998887754333222..... PP

  UBA_e1_thiolCys 179 keeee...........eeedeeeleelaeeleklakkessla...lklkpieFeKDddtnfhidfitaasNlRArnYkIkeadrlkvK 252
                         +e           + + +++le++++ele  + k  + +   l+ + + FeKDdd+  h+ f+taasNlRA+nY+I++adr+++K
       KOO23379.1 752 ---TEaearalrergpSPTAQRRLERMQSELEGQNGKALRARraeLQASVQAFEKDDDS--HMAFVTAASNLRAANYHIPPADRHRSK 834
                      ...222345555454435568999*******997666555558889999**********..************************998 PP

>> E1_FCCH  Ubiquitin-activating enzyme E1 FCCH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.7   0.0   6.9e-19   2.1e-15       2      71 .]     177     247 ..     176     247 .. 0.93

  Alignments for each domain:
  == domain 1  score: 56.7 bits;  conditional E-value: 6.9e-19
                 TTSEEEESTT--S---TT-EEEEES-BT-CCG.GGS--EE-EE-SSSEEE----TTS-SEEES-EEEEE-- CS
     E1_FCCH   2 npgvVtvleesrhgledgDyVtFseveGmtel.NgkeprkikvlgpytFeIgdtsnfspYkrgGivtqvKq 71 
                 +++ Vt++ e+ hgledg++V+++eveGm+ l   +  + ++v + +  +Igdt+  ++Y +gG   qvKq
  KOO23379.1 177 EEADVTCIPEQPHGLEDGNIVRLEEVEGMPSLcSAGRTFAVRVRSRHIVSIGDTRDGGTYLSGGRLVQVKQ 247
                 5788***************************9533357********************************7 PP

>> E1_UFD  Ubiquitin fold domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.1   0.0   6.2e-18   1.9e-14       1      93 []     907    1003 ..     907    1003 .. 0.92

  Alignments for each domain:
  == domain 1  score: 54.1 bits;  conditional E-value: 6.2e-18
      E1_UFD    1 WDrlev..e.g..eitlkelldyfkekkklevsmislgvsllYasflpkkkdkerlklklselveevtkkkipphqkyldlevsved.eegedvevP 91  
                  W r+e+  e g  e+tl+el+++++ + +le+sm+s     lY+s  p++++k  + l++   ve+ t+++  + q++l l++sv d e++edvevP
  KOO23379.1  907 WSRIEIgpEpGeeELTLQELVAQLEARLQLELSMLSKSGMTLYSSLAPPAQQKVWMGLPVHAAVEAATGQP--ARQQTLRLQASVYDeEKEEDVEVP 1001
                  9*****6414255*******************************************************998..689999*****9998889****** PP

      E1_UFD   92 lv 93  
                  +v
  KOO23379.1 1002 TV 1003
                  98 PP

>> Shikimate_DH  Shikimate / quinate 5-dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   0.0   0.00028      0.82       9      56 ..      42      89 ..      35     105 .. 0.87
   2 ?    2.1   0.1     0.062   1.9e+02       9      33 ..     399     423 ..     392     428 .. 0.81

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 0.00028
                  ..TT-EEEEES-SHHHHHHHHHHHCCT-CEEEEEESSHHHHHHHHHHH CS
  Shikimate_DH  9 slkekkvlliGaGemaelvakhLlakgvkkvvvaNRtlerakelaeel 56
                  sl+ + vlliG   ++ +vak+L+ +gv kv v   t++  ++l +++
    KOO23379.1 42 SLAASAVLLIGLSGLGAEVAKNLVLAGVSKVDVYDDTVTSFSDLSSNF 89
                  688999********************************9999999887 PP

  == domain 2  score: 2.1 bits;  conditional E-value: 0.062
                   ..TT-EEEEES-SHHHHHHHHHHHC CS
  Shikimate_DH   9 slkekkvlliGaGemaelvakhLla 33 
                    l   k  ++GaG ++ +++k L+ 
    KOO23379.1 399 ALGALKYFIVGAGAIGCELLKCLAL 423
                   56677899************99975 PP

>> 2-Hacid_dh_C  D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.5   0.0    0.0033       9.9      27      70 ..      36      80 ..      13      93 .. 0.82
   2 ?    4.2   0.0     0.008        24      33      60 ..     399     426 ..     376     452 .. 0.83

  Alignments for each domain:
  == domain 1  score: 5.5 bits;  conditional E-value: 0.0033
                  CCGSBS-GTTSEEEEES-SHHHHHHHHHHHHTT-.EEEEESSSHH CS
  2-Hacid_dh_C 27 kallgkelsgktvGiiGlGrIGqavakrlkafgm.kviaydrskk 70
                   +  +++l+ + v +iGl  +G +vak l   g+ kv +yd + +
    KOO23379.1 36 GHAAQRSLAASAVLLIGLSGLGAEVAKNLVLAGVsKVDVYDDTVT 80
                  56677899*********************9888879999998765 PP

  == domain 2  score: 4.2 bits;  conditional E-value: 0.008
                   -GTTSEEEEES-SHHHHHHHHHHHHTT- CS
  2-Hacid_dh_C  33 elsgktvGiiGlGrIGqavakrlkafgm 60 
                    l   +  i+G+G+IG ++ k+l+ +g+
    KOO23379.1 399 ALGALKYFIVGAGAIGCELLKCLALMGV 426
                   56667778***************98886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1012 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       549  (0.0306208); expected 358.6 (0.02)
Passed bias filter:                      429  (0.0239277); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.70u 0.29s 00:00:00.99 Elapsed: 00:00:00.44
# Mc/sec: 6883.82
//
Query:       KOO23380.1  [L=1091]
Description: gelation factor, partial [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.1e-50  168.9   0.0    3.8e-18   66.2   0.0    7.5  7  Filamin     Filamin/ABP280 repeat
    7.4e-19   67.9   0.8    1.8e-05   25.0   0.0    5.4  6  Invasin_D3  Invasin, domain 3
    2.9e-06   27.2   2.1      0.039   13.9   0.3    3.9  4  Big_1       Bacterial Ig-like domain (group 1)
     0.0034   18.3   0.3       0.39   11.7   0.0    3.4  3  CHRD        CHRD domain
  ------ inclusion threshold ------
      0.036   14.0   0.8        2.4    8.2   0.0    3.1  3  Cadherin_5  Cadherin-like domain
      0.042   12.5   0.3      0.072   11.8   0.3    1.2  1  GBV-C_env   GB virus C genotype envelope
      0.063   13.2   0.0       0.58   10.1   0.0    2.6  3  BclA_C      BclA C-terminal domain
        1.1    9.4   4.4        7.3    6.8   0.1    3.2  3  Big_3_5     Bacterial Ig-like domain (group 3)


Domain annotation for each model (and alignments):
>> Filamin  Filamin/ABP280 repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.2   0.0   1.7e-21   3.8e-18       7     102 ..      53     140 ..      48     141 .. 0.94
   2 !   12.2   0.0   0.00011      0.25       2      56 ..     149     206 ..     148     339 .. 0.78
   3 !    9.2   0.0   0.00096       2.2      73     102 ..     569     600 ..     525     601 .. 0.91
   4 !   28.7   0.0   8.3e-10   1.9e-06      18     102 ..     629     713 ..     605     714 .. 0.81
   5 !   16.2   0.0   6.2e-06     0.014       3     102 ..     723     847 ..     721     848 .. 0.71
   6 !   10.6   0.0   0.00034      0.76      70     103 .]     936     969 ..     899     969 .. 0.90
   7 !   15.5   0.0     1e-05     0.023       3      94 ..     978    1061 ..     976    1068 .. 0.79

  Alignments for each domain:
  == domain 1  score: 66.2 bits;  conditional E-value: 1.7e-21
                 EEEESGGGTEEETTS-EEEEEEESSSTSCCCSTTS..EEEEE..ESSTS.....EEEEEEEE-SSSEEEEEE--SSSCEEEEEEEETTCE-TTSSE CS
     Filamin   7 skvnGpGieasvagesltFtvytkdakgeksevggdelqvrivtgsphgaatkssvkievvdnedgtytvsYtpeepgtyrvsvkldgkhiggsPf 102
                 sk+ G+G+e+++a + ++Ft++++da+g ++++ggd + v+i     hga   s v ++v+dnedgty v+Y+++++g y++sv l g   +gsP+
  KOO23380.1  53 SKAHGKGLESAIARKLAKFTIEARDAEGARMQHGGDTFTVTI-----HGA---SVVRARVQDNEDGTYSVEYKAAASGAYSISVLLYGLALPGSPW 140
                 899***************************************.....676...367889************************************7 PP

  == domain 2  score: 12.2 bits;  conditional E-value: 0.00011
                 CSTTSEEEESGGGTEEETTS-EEEEEEESSSTSCCCSTTS..EEEEE.......ESSTS. CS
     Filamin   2 vdpskskvnGpGieasvagesltFtvytkdakgeksevggdelqvriv.....tgsphga 56 
                  d++++ + G  + ++ a e ++F+v   da+g++ +  +++l+v +v       +++g 
  KOO23380.1 149 PDAEQCHLHGAALTRAAARETMSFEVSFADAHGNPTH--AEDLDVYVVplaelEDDDDGL 206
                 699**********9999*****************655..588888887777764444444 PP

  == domain 3  score: 9.2 bits;  conditional E-value: 0.00096
                 EEEEEE--SSSCEEEEEEEETTC..E-TTSSE CS
     Filamin  73 tytvsYtpeepgtyrvsvkldgk..higgsPf 102
                 t++v+Y +  +g+yr++v l+++    +gsPf
  KOO23380.1 569 THNVRYSVGLAGRYRLHVGLRQQgvALPGSPF 600
                 89*****************966533889***9 PP

  == domain 4  score: 28.7 bits;  conditional E-value: 8.3e-10
                 ETT.S-EEEEEEESSSTSCCCSTTS..EEEEE..ESSTS........EEEEEEEE-SSSEEEEEE--SSSCEEEEEEEETTCE-TTSSE CS
     Filamin  18 vag.esltFtvytkdakgeksevggdelqvrivtgsphgaatks...svkievvdnedgtytvsYtpeepgtyrvsvkldgkhiggsPf 102
                 +ag  s + +v++ d  g+++++gg  l+v     s+++++ k+    vk+ + d++dg+y+ +++ +++gty vsv++ + h  gsP+
  KOO23380.1 629 RAGeVSCGMIVKLCDRMGNRCTSGGASLNVVT---SQKERS-KVdahLVKTFCLDQQDGSYNLQWQSQRAGTYMVSVTISNVHLVGSPM 713
                 5664556999*************998888665...444442.2234456677************************************7 PP

  == domain 5  score: 16.2 bits;  conditional E-value: 6.2e-06
                 STTSEEEESGGGTEEETTS-EEEEEEESSSTSCCCSTTS..EEEEE............ESSTS.......EEEEEEEE-S...............SSEE CS
     Filamin   3 dpskskvnGpGieasvagesltFtvytkdakgeksevggdelqvriv..........tgsphgaatks..svkievvdne...............dgty 74 
                 +++k++v+G+Gi +++ag+++ +  y+kda  ++     + +   +v          +++       +  +v  +  dn                   +
  KOO23380.1 723 EVDKCVVSGDGITSAQAGRPALVALYCKDAFDNPAG-RSSTISFGLVlvprdskdvlIKK-------EtsEVLLKTADNPlgvrlnsmpfnggwvGEQF 813
                 678*************************99777544.33555533333232222222111.......1223444455555777777788888887779* PP

                 EEEE--SSSCEEEEEEEETT......CE-TTSSE CS
     Filamin  75 tvsYtpeepgtyrvsvkldg......khiggsPf 102
                 +++Yt++e+g++ +++   +      k ++gsPf
  KOO23380.1 814 EIRYTAQEAGEFGLHIWSTDaelimrKFVPGSPF 847
                 ****************988878888899999999 PP

  == domain 6  score: 10.6 bits;  conditional E-value: 0.00034
                 SSSEEEEEE--SSSCEEEEEEEETTCE-TTSSEE CS
     Filamin  70 edgtytvsYtpeepgtyrvsvkldgkhiggsPfd 103
                 e g+y  sY  +++g ++++ kl g++i gsPf+
  KOO23380.1 936 ELGKYGLSYDTQKKGLHTLHTKLFGERIVGSPFR 969
                 5599****************************95 PP

  == domain 7  score: 15.5 bits;  conditional E-value: 1e-05
                  STTSEEEESGGGTEEETTS-EEEEEEESSSTSCCCSTTS..EEEEE..ESSTS.....EEEEEEEE-SSSEEEEEE--SSS.CEEEEEEEETT CS
     Filamin    3 dpskskvnGpGieasvagesltFtvytkdakgeksevggdelqvrivtgsphgaatkssvkievvdnedgtytvsYtpeep.gtyrvsvkldg 94  
                   +sk+++  p  e+ v++ + ++  ++ d++g+++ +gg  +  r+   +           + v+dn dg+yt s+t + + g++r+ v+l +
  KOO23380.1  978 VASKCRLHLPD-ESPVVNCPCEIRLEAVDKYGNRLDSGGCSVVGRV--VGTGV------SAVTVTDNADGSYTLSFTGTVAgGECRLVVRLEK 1061
                  68999999998.77799****************9999875555555..33322......2467*************99988678999988876 PP

>> Invasin_D3  Invasin, domain 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.0   0.0     8e-09   1.8e-05      23      82 ..      70     132 ..      65     144 .. 0.83
   2 ?    0.6   0.0      0.33   7.3e+02      20      61 ..     168     206 ..     159     218 .. 0.67
   3 !   15.1   0.0   9.8e-06     0.022      26      93 ..     639     717 ..     631     720 .. 0.75
   4 ?   -0.5   0.0      0.71   1.6e+03      22      44 ..     743     766 ..     729     778 .. 0.80
   5 ?   -3.2   0.0         5   1.1e+04      28      52 ..     900     927 ..     899     963 .. 0.56
   6 !   19.3   0.0   4.8e-07    0.0011      24      94 ..     999    1072 ..     997    1074 .. 0.77

  Alignments for each domain:
  == domain 1  score: 25.0 bits;  conditional E-value: 8e-09
  Invasin_D3  23 tltvtlkDangnp..vsgltvtfsttsag.tlsavtdngdGtytatLtattagtatitptvnG 82 
                   t+ ++Da+g     +g+t t++   a  +   v+dn+dGty+++ +a+++g+++i++ + G
  KOO23380.1  70 KFTIEARDAEGARmqHGGDTFTVTIHGASvVRARVQDNEDGTYSVEYKAAASGAYSISVLLYG 132
                 5799*********777778877776644435568*************************9988 PP

  == domain 2  score: 0.6 bits;  conditional E-value: 0.33
  Invasin_D3  20 ststltvtlkDangnpvsgltvtfsttsagtlsavtdngdGt 61 
                 +t   +v   Da+gnp+  +   +       l +++d++dG 
  KOO23380.1 168 ETMSFEVSFADAHGNPTHAEDLDVYVV---PLAELEDDDDGL 206
                 6667789999******87766555533...445566666665 PP

  == domain 3  score: 15.1 bits;  conditional E-value: 9.8e-06
  Invasin_D3  26 vtlkDangnp..vsgltvtfsttsagtlsavt.........dngdGtytatLtattagtatitptvnG.vaiaatatvtl 93 
                 v+l D  gn    +g++ ++ t+ +   s+v+         d++dG y  + ++++agt+ +++t+++    +++ +++l
  KOO23380.1 639 VKLCDRMGNRctSGGASLNVVTS-QKERSKVDahlvktfclDQQDGSYNLQWQSQRAGTYMVSVTISNvHLVGSPMELKL 717
                 7899999**99555688888877.33234444444557888*************************99555555555665 PP

  == domain 4  score: -0.5 bits;  conditional E-value: 0.71
  Invasin_D3  22 stltvtlkDangnpvsg.ltvtfs 44 
                 +++ +  kDa++np++   t++f 
  KOO23380.1 743 ALVALYCKDAFDNPAGRsSTISFG 766
                 5678889*******7763557775 PP

  == domain 5  score: -3.2 bits;  conditional E-value: 5
  Invasin_D3  28 lkDangnp...vsgltvtfsttsagtls 52 
                 l+D++gn+   + g+ v+   t +g l 
  KOO23380.1 900 LRDEFGNAsyaTEGALVASLETPDGHLM 927
                 7999999987555554555555577444 PP

  == domain 6  score: 19.3 bits;  conditional E-value: 4.8e-07
  Invasin_D3   24 ltvtlkDangnp..vsgltvtfsttsag.tlsavtdngdGtytatLta.ttagtatitptvnGvaiaatatvtlt 94  
                  + + + D+ gn    +g +v+     +g +  +vtdn+dG yt  +t+  + g+  + + ++ ++  +++t+t++
  KOO23380.1  999 IRLEAVDKYGNRldSGGCSVVGRVVGTGvSAVTVTDNADGSYTLSFTGtVAGGECRLVVRLE-KIELEPVTITFV 1072
                  67899*******75555666555555555555788*************55578899999998.688888888887 PP

>> Big_1  Bacterial Ig-like domain (group 1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.6   0.1    0.0004       0.9       8      64 .]      70     128 ..      67     128 .. 0.84
   2 ?   -4.1   0.0       7.3   1.6e+04      11      20 ..     174     183 ..     169     184 .. 0.79
   3 ?   -0.4   0.0      0.52   1.2e+03      43      64 .]     680     701 ..     665     701 .. 0.87
   4 !   13.9   0.3   1.8e-05     0.039       9      58 ..     999    1050 ..     996    1051 .. 0.87

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 0.0004
       Big_1   8 tltatvkDangnpvagatVtfsvsg.gals.assgtTdanGkatvtltstkagtvtvtA 64 
                 ++t+ ++Da+g  ++    tf+v+  ga +  + ++ +++G+++v+ +   +g +++++
  KOO23380.1  70 KFTIEARDAEGARMQHGGDTFTVTIhGASVvRARVQDNEDGTYSVEYKAAASGAYSISV 128
                 5688899999999987777777777755556***********************99975 PP

  == domain 2  score: -4.1 bits;  conditional E-value: 7.3
       Big_1  11 atvkDangnp 20 
                 +   Da+gnp
  KOO23380.1 174 VSFADAHGNP 183
                 6678999999 PP

  == domain 3  score: -0.4 bits;  conditional E-value: 0.52
       Big_1  43 danGkatvtltstkagtvtvtA 64 
                  ++G +  +  s++agt+ v++
  KOO23380.1 680 QQDGSYNLQWQSQRAGTYMVSV 701
                 68999999**********9975 PP

  == domain 4  score: 13.9 bits;  conditional E-value: 1.8e-05
       Big_1    9 ltatvkDangnpva..gatVtfsvsggalsassgtTdanGkatvtltstkag 58  
                  ++  ++D++gn +   g +V  +v g+ +sa ++t +a+G +t ++t+t+ag
  KOO23380.1  999 IRLEAVDKYGNRLDsgGCSVVGRVVGTGVSAVTVTDNADGSYTLSFTGTVAG 1050
                  666788999998854488999999999999*********************9 PP

>> CHRD  CHRD domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.7   0.0   0.00017      0.39       1      72 [.      90     180 ..      90     228 .. 0.70
   2 ?   -1.1   0.0       1.6   3.6e+03      31      73 ..     569     611 ..     551     702 .. 0.52
   3 ?    2.2   0.0      0.15   3.4e+02      19      74 ..    1024    1079 ..    1014    1089 .. 0.60

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.00017
        CHRD   1 fsalLsgaqevppavttgasGtavltl.dddgktlsysvtvsgls...............dvtaaHiheg.....aagengpvvvtleeteke 72 
                 f++++ ga +v ++v+ + +Gt  +++   ++++ s+sv + gl                d+ + H+h++     aa e+  + v++ +   +
  KOO23380.1  90 FTVTIHGASVVRARVQDNEDGTYSVEYkAAASGAYSISVLLYGLAlpgspwslnvltarpDAEQCHLHGAaltraAARETMSFEVSFADA--H 180
                 788999***99988*************546688888899999**999999999866665545555*****87754333444444444433..2 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 1.6
        CHRD  31 gktlsysvtvsglsdvtaaHihegaag.....engpvvvtleetekek 73 
                 +++++ysv ++g       ++h g++         p+++t+++  +++
  KOO23380.1 569 THNVRYSVGLAGR-----YRLHVGLRQqgvalPGSPFLLTVTPSHAHA 611
                 4667777777655.....455555322112112223333332222222 PP

  == domain 3  score: 2.2 bits;  conditional E-value: 0.15
        CHRD   19 asGtavltldddgktlsysvtvsglsdvtaa.......Hihegaagengpvvvtleetekeke 74  
                  ++G  ++t+ +d+   sy+++++g+    a        ++   ++ e +pv +t+ ++ ++++
  KOO23380.1 1024 GTGVSAVTV-TDNADGSYTLSFTGTV---AGgecrlvvRL---EKIELEPVTITFVKPTNDET 1079
                  578777777.3455578888888882...21233222222...33378888888876655544 PP

>> Cadherin_5  Cadherin-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.2   0.0    0.0011       2.4      38      78 ..      87     127 ..      70     129 .. 0.84
   2 ?   -1.5   0.0       1.1   2.5e+03      56      83 ..     678     705 ..     665     711 .. 0.84
   3 ?    2.3   0.1     0.076   1.7e+02      53      67 ..    1030    1044 ..    1017    1052 .. 0.79

  Alignments for each domain:
  == domain 1  score: 8.2 bits;  conditional E-value: 0.0011
  Cadherin_5  38 gdtLsvssltadaenGtvvdngdGtftftpeanynGevtls 78 
                 gdt +v+   a+   + v dn+dGt++++ +a  +G+ ++s
  KOO23380.1  87 GDTFTVTIHGASVVRARVQDNEDGTYSVEYKAAASGAYSIS 127
                 788777777777778***************99999988775 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 1.1
  Cadherin_5  56 vdngdGtftftpeanynGevtlsYtvsD 83 
                  d++dG++ ++ +++  G+  +s t+s 
  KOO23380.1 678 LDQQDGSYNLQWQSQRAGTYMVSVTISN 705
                 6999******999999999999998885 PP

  == domain 3  score: 2.3 bits;  conditional E-value: 0.076
  Cadherin_5   53 GtvvdngdGtftftp 67  
                   tv+dn+dG++t+  
  KOO23380.1 1030 VTVTDNADGSYTLSF 1044
                  5899*******9864 PP

>> GBV-C_env  GB virus C genotype envelope
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.3   3.2e-05     0.072     232     343 ..     618     733 ..     607     750 .. 0.78

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 3.2e-05
   GBV-C_env 232 rdCweetGev.rlsfeeCGvGtrlteeleavlvdggveskvttpvgerpkylgqhgvgtlrgavkklsvnyt..vidiggylhalkcPavefpegtlp. 326
                  dC +  G+v r +  +CG+ ++l +++      gg+  +v+t ++er+k    h v t+    + +s+n+     + g y++ ++  +v+ + + +  
  KOO23380.1 618 ADCLPLVGHVcRAGEVSCGMIVKLCDRMGNRCTSGGASLNVVTSQKERSKVD-AHLVKTFCLDQQDGSYNLQwqSQRAGTYMVSVTISNVHLVGSPMEl 715
                 59999999873667789********************************976.577888888888888876511567899********99987665542 PP

   GBV-C_env 327 .klipgrPvnaClllgte 343
                   l + + v+ C++ g  
  KOO23380.1 716 kLLAGPPEVDKCVVSGDG 733
                 045555559999985544 PP

>> BclA_C  BclA C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.0   0.00026      0.58      43     106 ..     107     175 ..      84     182 .. 0.80
   2 ?   -1.9   0.0       1.3   2.9e+03      49      85 ..     571     607 ..     569     614 .. 0.72
   3 ?   -2.2   0.0       1.7   3.8e+03      43      57 ..     692     706 ..     684     719 .. 0.80

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.00026
      BclA_C  43 neaGrYyisYqvnttaallvslrllvngvavpgs.......tvtpalstsslsasvivtltagdtislqlf 106
                 ne G+Y+++Y++ ++   + s+++l+ g a+pgs       t+ p     +l++++ ++ +a +t+s +++
  KOO23380.1 107 NEDGTYSVEYKAAASG--AYSISVLLYGLALPGSpwslnvlTARPDAEQCHLHGAALTRAAARETMSFEVS 175
                 799*******987666..57888999999999997766666666777778888888888888888887765 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 1.3
      BclA_C  49 yisYqvnttaallvslrllvngvavpgstvtpalsts 85 
                  ++Y+v ++    + + l + gva+pgs +  +++ s
  KOO23380.1 571 NVRYSVGLAGRYRLHVGLRQQGVALPGSPFLLTVTPS 607
                 5778888888888888899999****99555544444 PP

  == domain 3  score: -2.2 bits;  conditional E-value: 1.7
      BclA_C  43 neaGrYyisYqvntt 57 
                 ++aG+Y++s ++   
  KOO23380.1 692 QRAGTYMVSVTISNV 706
                 5799***99988765 PP

>> Big_3_5  Bacterial Ig-like domain (group 3)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.8   0.1    0.0033       7.3      27      64 ..      89     127 ..      65     132 .. 0.70
   2 ?   -1.5   0.0       1.3   2.9e+03      43      66 ..     679     702 ..     667     704 .. 0.77
   3 ?    1.5   1.0      0.15   3.4e+02      37      59 ..    1028    1050 ..    1014    1052 .. 0.55

  Alignments for each domain:
  == domain 1  score: 6.8 bits;  conditional E-value: 0.0033
                 EEEEEE.TTEE-SS-EE--TTSEEEEEEE-SS-EEEEEE CS
     Big_3_5  27 tVtftd.ggttlgtavllsanGtAtltvsalaaGthsit 64 
                 t t+t+ g+ ++ + v  +++Gt ++ ++a a G++si 
  KOO23380.1  89 TFTVTIhGASVVRARVQDNEDGTYSVEYKAAASGAYSIS 127
                 55555534455567777778*****************97 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 1.3
                 --TTSEEEEEEE-SS-EEEEEEEE CS
     Big_3_5  43 lsanGtAtltvsalaaGthsitAt 66 
                   ++G+ +l++++  aGt+ + +t
  KOO23380.1 679 DQQDGSYNLQWQSQRAGTYMVSVT 702
                 446899************998765 PP

  == domain 3  score: 1.5 bits;  conditional E-value: 0.15
                  -SS-EE--TTSEEEEEEE-SS-E CS
     Big_3_5   37 lgtavllsanGtAtltvsalaaG 59  
                   + +v+ +a+G+ tl+++++ aG
  KOO23380.1 1028 SAVTVTDNADGSYTLSFTGTVAG 1050
                  12233333566666666666555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1091 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       377  (0.0210274); expected 358.6 (0.02)
Passed bias filter:                      306  (0.0170673); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.72u 0.27s 00:00:00.99 Elapsed: 00:00:00.45
# Mc/sec: 7269.37
//
Query:       KOO23381.1  [L=190]
Description: hypothetical protein Ctob_004746 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.2e-08   33.5   0.0      9e-08   32.0   0.0    1.8  1  Thioredoxin    Thioredoxin
  ------ inclusion threshold ------
      0.019   14.9   0.0       0.14   12.1   0.0    2.2  3  Thioredoxin_6  Thioredoxin-like domain
       0.13   11.9   3.1       0.16   11.6   3.1    1.2  1  DUF2968        Protein of unknown function (DUF2968)
       0.46   10.6   2.1       0.88    9.7   2.1    1.4  1  YebO           YebO-like protein


Domain annotation for each model (and alignments):
>> Thioredoxin  Thioredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.0   0.0     2e-11     9e-08      48     101 ..      35      92 ..      20      94 .. 0.85

  Alignments for each domain:
  == domain 1  score: 32.0 bits;  conditional E-value: 2e-11
                  TT..TSEEEEEETTTS.HHHHHHTT-SSSSEEEEEETTE.EEEEEESS-HHHHHHHHH CS
  Thioredoxin  48 kd..kvklakvdvden.edlakkyevegiPtlklfkngk.evkkyegarekeklaafl 101
                  ++  +v +a vd+++  e l++++++eg+Pt+k+f+  +   ++yeg+re ++l++f+
   KOO23381.1  35 AGstNVLIADVDCTAAgEPLCERFGIEGFPTIKVFNPPDeDGEDYEGGRELDELKEFV 92 
                  33559*********873679***************99886899************997 PP

>> Thioredoxin_6  Thioredoxin-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.0       0.3   1.3e+03      28      46 ..      24      42 ..      23      46 .. 0.71
   2 ?   12.1   0.0   3.1e-05      0.14      33      71 ..      54      92 ..      41      94 .. 0.88
   3 ?   -1.8   0.0      0.56   2.5e+03     108     153 ..     138     184 ..     129     186 .. 0.62

  Alignments for each domain:
  == domain 1  score: -0.9 bits;  conditional E-value: 0.3
                   E--HHHHHHTT--SSEEEE CS
  Thioredoxin_6 28 tkskevadklgvkepavll 46
                   t++kev++k ++ + +vl+
     KOO23381.1 24 TFNKEVFEKEHAGSTNVLI 42
                   5778888888887777765 PP

  == domain 2  score: 12.1 bits;  conditional E-value: 3.1e-05
                   HHHHTT--S.SEEEEEETTTTEEEEEETHT--HHHHHHHH CS
  Thioredoxin_6 33 vadklgvke.pavllfrkfdeekvkydgekitvddlkkfi 71
                   +++ +g+++ p++++f++ de  ++y+g   + d+lk+f+
     KOO23381.1 54 LCERFGIEGfPTIKVFNPPDEDGEDYEGG-RELDELKEFV 92
                   78999***99******************9.8********8 PP

  == domain 3  score: -1.8 bits;  conditional E-value: 0.56
                    TTHHHHHHHH.HHHHHHTTTT-EEEEEETTGGHHHHHHTT--GGG-S CS
  Thioredoxin_6 108 eeteklkkai.ekvakefkdkinfaladaksfkrpleylglsssdlP 153
                    +++ek+ +a+ e++ ++f  + + + ad+k+ k  +++l++  ++lP
     KOO23381.1 138 TAKEKAHAALlESLQAQFDESNKALEADKKAAKPRIKQLKMAGTKLP 184
                    44455555543666666666556667777777777777777777777 PP

>> DUF2968  Protein of unknown function (DUF2968)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   3.1   3.6e-05      0.16     118     170 ..     126     179 ..     108     189 .. 0.82

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 3.6e-05
     DUF2968 118 searaerLqadlavarqQeqav.aerQkqarkeaaaLeaqreaaqaqlralqrq 170
                 + a++ r+q+dl+ +++ ++a+ ++ Q+q  +  +aLea+++aa+ ++++l+  
  KOO23381.1 126 RVAELLRIQEDLTAKEKAHAALlESLQAQFDESNKALEADKKAAKPRIKQLKMA 179
                 55678899*****9988887761567***********************99865 PP

>> YebO  YebO-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   2.1    0.0002      0.88      23      67 ..     126     170 ..     121     178 .. 0.83

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 0.0002
        YebO  23 rAneqieLleelleqqkrQnaLLrrLaeakkeqsedveeksdave 67 
                 r  e+++++e l  ++k   aLL+ L  +  e++++ e++++a++
  KOO23381.1 126 RVAELLRIQEDLTAKEKAHAALLESLQAQFDESNKALEADKKAAK 170
                 889***********************9998887777777666554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (190 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       993  (0.0553851); expected 358.6 (0.02)
Passed bias filter:                      601  (0.0335211); expected 358.6 (0.02)
Passed Vit filter:                        62  (0.00345808); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.43u 0.28s 00:00:00.71 Elapsed: 00:00:00.41
# Mc/sec: 1374.89
//
Query:       KOO23382.1  [L=297]
Description: dhhc zinc finger domain-containing protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    9.5e-31  106.7  13.5    9.5e-31  106.7  13.5    2.0  2  DHHC      DHHC palmitoyltransferase
  ------ inclusion threshold ------
       0.45   10.1   9.1        3.8    7.1   4.4    2.4  2  DUF2208   Predicted membrane protein (DUF2208)


Domain annotation for each model (and alignments):
>> DHHC  DHHC palmitoyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.4   0.9      0.07   6.2e+02      56     113 ..      12      69 ..       6      75 .. 0.47
   2 !  106.7  13.5   1.1e-34   9.5e-31       7     133 ..     112     237 ..     106     238 .. 0.89

  Alignments for each domain:
  == domain 1  score: 0.4 bits;  conditional E-value: 0.07
        DHHC  56 lylllllilalvlllialvklveeekkseflavtllkkllsilllvlsllfllllgll 113
                 l+++ l++++ +++ + +   + + k  +++ + +++  +++l+++ +l+ l +++++
  KOO23382.1  12 LFVVALIAWCYWVYTTDIALPMVQLKPGQVEPIGTHELGIAYLIAFNCLFGLGMISFV 69 
                 4455555555555555555555555555555555544333333333333333333333 PP

  == domain 2  score: 106.7 bits;  conditional E-value: 1.1e-34
        DHHC   7 fCstc..niykpprskHcrvCnrcvlrfDHhCpwlnnciGerNykyFllfllylllllilalvlllialvklveeekkseflavtllkkllsilllvls 103
                 +C++   n+ykp+r+++c+  +rcvl++DH+CpwlnnciG++N+k+F+lf++y++ l++++lv++  ++v+ v+++++  +  ++ +    + l++++ 
  KOO23382.1 112 VCRKSkpNMYKPDRAHFCKMLGRCVLKMDHFCPWLNNCIGFYNHKFFYLFIMYMASLTMFMLVTMTPTFVHDVTSMDEVMIDFTMEFR---VTLTYLVL 207
                 555442289*********************************************************************9888777775...67777777 PP

        DHHC 104 llfllllgllllfhlylilrnlTtieamkk 133
                 +l+++ l++++ fh+yl++ n+Ttie+++k
  KOO23382.1 208 CLLCAGLVCFFGFHTYLLAFNYTTIEFLEK 237
                 78888889999***************9875 PP

>> DUF2208  Predicted membrane protein (DUF2208)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.0   0.0    0.0018        16      94     149 ..      13      69 ..       2      80 .. 0.60
   2 ?    7.1   4.4   0.00042       3.8      18      57 ..     151     190 ..     148     192 .. 0.88

  Alignments for each domain:
  == domain 1  score: 5.0 bits;  conditional E-value: 0.0018
     DUF2208  94 llllliviilffllyryiiplassllgev.leeklarflaflalFealflismflrl 149
                 +++ li   +++   ++ +p+++   g+v    + +  +a+l+ F  lf++ m++ +
  KOO23382.1  13 FVVALIAWCYWVYTTDIALPMVQLKPGQVePIGTHELGIAYLIAFNCLFGLGMISFV 69 
                 333334444444444444455555445553112334459*************99864 PP

  == domain 2  score: 7.1 bits;  conditional E-value: 0.00042
     DUF2208  18 aflpqylflviilYiivimvimsvltsrsllrerkkleev 57 
                 +f+++++f+++i+Y++   ++m v++++++ ++  +++ev
  KOO23382.1 151 GFYNHKFFYLFIMYMASLTMFMLVTMTPTFVHDVTSMDEV 190
                 799**********************999988887777775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (297 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       788  (0.0439511); expected 358.6 (0.02)
Passed bias filter:                      368  (0.0205254); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.46u 0.22s 00:00:00.68 Elapsed: 00:00:00.39
# Mc/sec: 2286.38
//
Query:       KOO23383.1  [L=111]
Description: hypothetical protein Ctob_004741 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
  ------ inclusion threshold ------
      0.017   15.3   0.9      0.026   14.7   0.9    1.3  1  Coatomer_g_Cpla  Coatomer subunit gamma-1 C-terminal appendag
      0.062   11.7   1.3      0.067   11.6   1.3    1.1  1  MFS_3            Transmembrane secretion effector
       0.17   12.1   6.0       0.21   11.8   6.0    1.1  1  SseB             SseB protein N-terminal domain
       0.71    9.9  10.5       0.85    9.6  10.5    1.0  1  Spore_III_AF     Stage III sporulation protein AF (Spore_III_


Domain annotation for each model (and alignments):
>> Coatomer_g_Cpla  Coatomer subunit gamma-1 C-terminal appendage platform
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.7   0.9   5.8e-06     0.026      67     115 .]      25      73 ..       9      73 .. 0.83

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 5.8e-06
                      EEEEEEEETTS-EEEEEEEEEE..SS.EEEEEEEEESSHHHHHHHHHH- CS
  Coatomer_g_Cpla  67 tLklaGkfvggekvlvrarlalssskgvtlkltvRsedeevaelvlsav 115
                        +   ++v +e+  vr+++  s+++++++++ +Rse+++v + v+++v
       KOO23383.1  25 EAQVEAQIVAEEEAQVRVQVEVSAGTRMIAQVDIRSEEAQVEAHVVAQV 73 
                      566777889999999***************************9999875 PP

>> MFS_3  Transmembrane secretion effector
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   1.3   1.5e-05     0.067     409     473 ..      35     100 ..       4     107 .. 0.80

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 1.5e-05
       MFS_3 409 feeplvaldlkprrGpvlv.kieYkieeedieaFlkalaelrrvrrrdGArkWtlvrdlenpevwv 473
                  ee +v ++++   G  ++ +++ + ee+++ea + a  e+r v  r+GA+  + ++d++n e  v
  KOO23383.1  35 EEEAQVRVQVEVSAGTRMIaQVDIRSEEAQVEAHVVAQVEVRMVEAREGAQVVSYFEDAANEEAHV 100
                 3677889999999997554289*************************************9988765 PP

>> SseB  SseB protein N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   6.0   4.7e-05      0.21       3      85 ..      13     105 ..      12     110 .. 0.77

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 4.7e-05
        SseB   3 ealaalrakeadpealaafleallnarvlvpvvaee.....eeee......glkvdkea..elalvtleaedgrralpvFTsaeelkkwaadarpv 85 
                 eal+++++k++ +++ +a + a  +a+v v v++++     +  +      + +v+     +++++++ea++g +++  F +a+   +++++ar++
  KOO23383.1  13 EALEEAKTKAQVEAQVEAQIVAEEEAQVRVQVEVSAgtrmiA--QvdirseEAQVEAHVvaQVEVRMVEAREGAQVVSYFEDAANE-EAHVKARVE 105
                 799999997777777777777779999999999999654441..16667764444444467***********************99.888888875 PP

>> Spore_III_AF  Stage III sporulation protein AF (Spore_III_AF)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6  10.5   0.00019      0.85      84     179 ..      20     108 ..       4     109 .. 0.79

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 0.00019
  Spore_III_AF  84 yeqrlekqikeelkeegyevkdveveieedeesrfgeiekvtitltekesekekeeesvekVepVeiasakeeneakeeeekeekeeikeylaefy 179
                    + ++e+q+++++ +e+ + ++v+ve+++        i +v+i+ +e   + e+ + ++++V  Ve   ++ ++ +  e++ +e++++k++++e +
    KOO23383.1  20 TKAQVEAQVEAQIVAEEEAQVRVQVEVSAGTRM----IAQVDIRSEE--AQVEAHVVAQVEVRMVEA-REGAQVVSYFEDAANEEAHVKARVEELL 108
                   356777777777777777777788888887777....**********..999999999999*****9.7888877777888888899998888765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (111 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1436  (0.0800937); expected 358.6 (0.02)
Passed bias filter:                      423  (0.0235931); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.39u 0.27s 00:00:00.66 Elapsed: 00:00:00.41
# Mc/sec: 812.56
//
Query:       KOO23384.1  [L=171]
Description: hypothetical protein Ctob_005643 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (171 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       182  (0.0101512); expected 358.6 (0.02)
Passed bias filter:                      175  (0.00976072); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.25s 00:00:00.62 Elapsed: 00:00:00.40
# Mc/sec: 1284.26
//
Query:       KOO23385.1  [L=239]
Description: hypothetical protein Ctob_005650, partial [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0067   16.9   1.4         23    5.5   0.1    3.4  3  DUF2960    Protein of unknown function (DUF2960)
  ------ inclusion threshold ------
       0.04   14.2   8.6        0.8   10.0   0.0    3.7  3  AP2        AP2 domain
      0.045   13.9   0.4       0.74    9.9   0.2    2.6  2  DUF1906    Domain of unknown function (DUF1906)
      0.049   13.5   0.0         13    5.7   0.0    2.3  2  Anophelin  Thrombin inhibitor from mosquito
       0.12   13.1   0.0         55    4.6   0.0    3.0  3  HNF-1A_C   Hepatocyte nuclear factor 1 (HNF-1), alpha isoform
       0.13   12.5   0.0         31    4.9   0.0    3.1  2  PET117     PET assembly of cytochrome c oxidase, mitochondria
       0.19   11.3   0.5         22    4.7   0.1    2.4  2  VARLMGL    DUF761-associated sequence motif
        9.7    6.3   7.3         15    5.7   0.2    3.1  3  Tom5       Mitochondrial import receptor subunit or transloca


Domain annotation for each model (and alignments):
>> DUF2960  Protein of unknown function (DUF2960)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.7   0.0     0.019        43      28      55 ..      39      66 ..      35      83 .. 0.83
   2 ?    5.5   0.1      0.01        23      28      70 ..     120     164 ..     116     167 .. 0.76
   3 ?    3.8   0.0     0.036        81      28      55 ..     201     228 ..     197     233 .. 0.75

  Alignments for each domain:
  == domain 1  score: 4.7 bits;  conditional E-value: 0.019
     DUF2960 28 eAvAaaEgidlteflameqQlamiskdk 55
                 A+AaaEg++l +  + e   +++ kd+
  KOO23385.1 39 RAAAAAEGLELVTSSRNETGFKNVYKDS 66
                599********99888888888777776 PP

  == domain 2  score: 5.5 bits;  conditional E-value: 0.01
     DUF2960  28 eAvAaaEgidlteflameqQlamiskdkk..avkdfrdneFaklG 70 
                  A+AaaEg++l    + e   +++ kd++  a k f + + ++lG
  KOO23385.1 120 RAAAAAEGLELMPSSRSETGFKNVYKDSGryAAKIFENGKQRHLG 164
                 599********9999999999998877652256666666666665 PP

  == domain 3  score: 3.8 bits;  conditional E-value: 0.036
     DUF2960  28 eAvAaaEgidlteflameqQlamiskdk 55 
                  A+AaaEg++l    + e   + + kd+
  KOO23385.1 201 RAAAAAEGLELMPSSRSETGFKGVNKDN 228
                 599*******988777777666666665 PP

>> AP2  AP2 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -5.3   2.9         8   1.8e+04      38      44 ..      36      42 ..      34      44 .. 0.74
   2 ?   10.0   0.0   0.00036       0.8       1      41 [.      57      92 ..      57      98 .. 0.79
   3 ?    8.1   0.0    0.0014       3.1       1      41 [.     138     173 ..     138     178 .. 0.78

  Alignments for each domain:
  == domain 1  score: -5.3 bits;  conditional E-value: 8
         AP2 38 eeAkraA 44
                eeA+ aA
  KOO23385.1 36 EEARAAA 42
                8999888 PP

  == domain 2  score: 10.0 bits;  conditional E-value: 0.00036
         AP2  1 pkikGVrydkkrgrWvAewskngkrkkkrfsvgkyGf.eeAk 41
                +++k+V++d   gr++A  ++ng    k+ ++g + +  eA+
  KOO23385.1 57 TGFKNVYKDS--GRYAAKIRENG----KQRHLGLFATpGEAA 92
                5799*****9..***********....666666666665555 PP

  == domain 3  score: 8.1 bits;  conditional E-value: 0.0014
         AP2   1 pkikGVrydkkrgrWvAewskngkrkkkrfsvgkyGf.eeAk 41 
                 +++k+V++d   gr++A   +ng    k+ ++g + +  eA+
  KOO23385.1 138 TGFKNVYKDS--GRYAAKIFENG----KQRHLGLFATpGEAA 173
                 5799*****9..******88999....666666666665555 PP

>> DUF1906  Domain of unknown function (DUF1906)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.0      0.58   1.3e+03      28      47 ..      31      51 ..      18      79 .. 0.69
   2 ?    9.9   0.2   0.00033      0.74      10      54 ..      94     150 ..      90     210 .. 0.68

  Alignments for each domain:
  == domain 1  score: -0.7 bits;  conditional E-value: 0.58
     DUF1906 28 knltaeevqdil.aaGlrlvp 47
                ++ltaee+++ + a+Gl+lv 
  KOO23385.1 31 QPLTAEEARAAAaAEGLELVT 51
                568899887654156888764 PP

  == domain 2  score: 9.9 bits;  conditional E-value: 0.00033
     DUF1906  10 avgrYlsgaersnrack.qknltaeevqdil.aaGlrlvpiyqggq...........d 54 
                  + rY++ ++  + +++ + +lta+e+++ + a+Gl+l+p                 +
  KOO23385.1  94 CCARYVGAERAAA-EARgDRPLTADEARAAAaAEGLELMPSSRSETgfknvykdsgrY 150
                 589*****75544.5665899******9765167****99766555444444444441 PP

>> Anophelin  Thrombin inhibitor from mosquito
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.7   0.0    0.0057        13       9      36 ..      91     119 ..      88     143 .. 0.73
   2 ?    5.4   0.0    0.0073        16       9      36 ..     172     200 ..     169     224 .. 0.74

  Alignments for each domain:
  == domain 1  score: 5.7 bits;  conditional E-value: 0.0057
                 XXXXXXXXXXXXXXXXXXXXXXX.XXXXX CS
   Anophelin   9 aflclalvvvvqsapqyarGdvp.tydee 36 
                 a lc a  v    a   arGd p t de 
  KOO23385.1  91 AALCCARYVGAERAAAEARGDRPlTADEA 119
                 679*******************9555654 PP

  == domain 2  score: 5.4 bits;  conditional E-value: 0.0073
                 XXXXXXXXXXXXXXXXXXXXXXX.XXXXX CS
   Anophelin   9 aflclalvvvvqsapqyarGdvp.tydee 36 
                 a lc a  v    a   arGd p t de 
  KOO23385.1 172 AALCYARHVGAERAAAEARGDGPlTADEA 200
                 679*******************9555654 PP

>> HNF-1A_C  Hepatocyte nuclear factor 1 (HNF-1), alpha isoform C terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.7   0.0      0.19   4.4e+02      17      62 ..      12      55 ..       3      63 .. 0.72
   2 ?    4.6   0.0     0.025        55      31      65 ..     105     139 ..     100     147 .. 0.84
   3 ?    2.8   0.0     0.091     2e+02      34      64 ..     189     219 ..     176     224 .. 0.76

  Alignments for each domain:
  == domain 1  score: 1.7 bits;  conditional E-value: 0.19
    HNF-1A_C 17 pvsqadslhlqpqdpagaqhlqsshrltasstvSSsSLvLYqsSds 62
                p++q+++l    +++  +   q++++  a+++++++ L+L  sS  
  KOO23385.1 12 PQPQPQPLS--AEEARVGDGPQPLTAEEARAAAAAEGLELVTSSRN 55
                444444443..4444456788999999999999*******999975 PP

  == domain 2  score: 4.6 bits;  conditional E-value: 0.025
    HNF-1A_C  31 pagaqhlqsshrltasstvSSsSLvLYqsSdstes 65 
                 +a a+  +++++  a+++++++ L+L +sS s  +
  KOO23385.1 105 AAEARGDRPLTADEARAAAAAEGLELMPSSRSETG 139
                 56778888999999999*************99765 PP

  == domain 3  score: 2.8 bits;  conditional E-value: 0.091
    HNF-1A_C  34 aqhlqsshrltasstvSSsSLvLYqsSdste 64 
                 a+   ++++  a+++++++ L+L +sS s  
  KOO23385.1 189 ARGDGPLTADEARAAAAAEGLELMPSSRSET 219
                 55555666667889999**********9865 PP

>> PET117  PET assembly of cytochrome c oxidase, mitochondrial
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.8   0.0     0.032        72      29      49 ..      56      76 ..      39     202 .. 0.76
   2 ?    4.9   0.0     0.014        31      28      47 ..     217     236 ..     200     238 .. 0.82

  Alignments for each domain:
  == domain 1  score: 3.8 bits;  conditional E-value: 0.032
      PET117 29 ealrqGvirDaerqaeKerkr 49
                e+  + v +D  r a+K r++
  KOO23385.1 56 ETGFKNVYKDSGRYAAKIREN 76
                556677788888888883332 PP

  == domain 2  score: 4.9 bits;  conditional E-value: 0.014
      PET117  28 realrqGvirDaerqaeKer 47 
                  e+  +Gv +D er + K++
  KOO23385.1 217 SETGFKGVNKDNERIKLKAE 236
                 577789**********9954 PP

>> VARLMGL  DUF761-associated sequence motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.7   0.1    0.0097        22      22      30 ..     127     135 ..     127     137 .. 0.89
   2 ?    4.7   0.1    0.0097        22      22      30 ..     208     216 ..     208     218 .. 0.89

  Alignments for each domain:
  == domain 1  score: 4.7 bits;  conditional E-value: 0.0097
     VARLMGL  22 GLDslPssh 30 
                 GL+++Pss 
  KOO23385.1 127 GLELMPSSR 135
                 9******96 PP

  == domain 2  score: 4.7 bits;  conditional E-value: 0.0097
     VARLMGL  22 GLDslPssh 30 
                 GL+++Pss 
  KOO23385.1 208 GLELMPSSR 216
                 9******96 PP

>> Tom5  Mitochondrial import receptor subunit or translocase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.4   0.9     0.036        81       4      15 ..      14      25 ..      12      28 .. 0.84
   2 ?    5.7   0.2    0.0066        15       4      19 ..      27      43 ..      25      44 .. 0.87
   3 ?   -3.6   0.0       5.3   1.2e+04       8      18 ..     113     123 ..     110     124 .. 0.70

  Alignments for each domain:
  == domain 1  score: 3.4 bits;  conditional E-value: 0.036
        Tom5  4 ggPpqpSeeEik 15
                ++P+++S+eE +
  KOO23385.1 14 PQPQPLSAEEAR 25
                5899******87 PP

  == domain 2  score: 5.7 bits;  conditional E-value: 0.0066
        Tom5  4 g.gPpqpSeeEikaaea 19
                g gP+++++eE +aa a
  KOO23385.1 27 GdGPQPLTAEEARAAAA 43
                559**********9976 PP

  == domain 3  score: -3.6 bits;  conditional E-value: 5.3
        Tom5   8 qpSeeEikaae 18 
                 ++++ E +aa 
  KOO23385.1 113 PLTADEARAAA 123
                 57888888875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (239 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       289  (0.0161191); expected 358.6 (0.02)
Passed bias filter:                      193  (0.0107647); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.43u 0.26s 00:00:00.69 Elapsed: 00:00:00.42
# Mc/sec: 1692.78
//
Query:       KOO23386.1  [L=549]
Description: beta-glucosidase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.4e-47  161.5   0.0    4.6e-47  160.6   0.0    1.5  1  Glyco_hydro_3_C  Glycosyl hydrolase family 3 C-terminal domai
      7e-21   74.9   0.0    1.6e-20   73.7   0.0    1.5  1  Glyco_hydro_3    Glycosyl hydrolase family 3 N terminal domai
    1.4e-14   54.0   0.0    2.8e-14   53.0   0.0    1.6  1  Fn3-like         Fibronectin type III-like domain


Domain annotation for each model (and alignments):
>> Glyco_hydro_3_C  Glycosyl hydrolase family 3 C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  160.6   0.0   7.7e-51   4.6e-47       1     204 []     191     438 ..     191     438 .. 0.89

  Alignments for each domain:
  == domain 1  score: 160.6 bits;  conditional E-value: 7.7e-51
                      -EEEEEGSS--S-.S-STEEEEEESGGGSSS-SS-BSSS----S---HHHHHHHHHHH.............................-HHHHHH CS
                      xxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...........................xxxxxxxx RF
  Glyco_hydro_3_C   1 iVLLkNennlLPL.kkklkkiaviGpnadetlklGggsgtvtvsylvsplegirerles...........................eegideav 66 
                      iVLLkN++++LPL +    k+a+iG +a +++  Gggsg+v++s    p+++i ++++                             ++i++ +
       KOO23386.1 191 IVLLKNDKSTLPLsSSAGLKLALIGRTAMDPVVAGGGSGEVKPSSKPRPYDAILAKMGLtsppapplqptppacnpagtkcvyyddGSDIERSA 284
                      8************967777**********************999999**********779*************************9889***** PP

                      HHHHHTSEEEEEEEES...SB-TTSCSGHHSSTTHHHHHHHHHHTTSSEEEEEEESSGG--TTTGTTTEEEEEE-S--GCCHHHHHHHHHTTSS CS
                      xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Glyco_hydro_3_C  67 eaakeaDvavvvvgedpeiegEgvDrtdlalpeaqdelikavaaanknvvvvlqsggpvavepwkeenvkAilaawlpGqegGtaiadvLfGdv 160
                      ++a+eaDva+v+v ++   ++Eg+Dr +l+ +++ del+++vaa++    vv+  +   a++pw  ++v+Ai   ++pGqe G+a+advLfGdv
       KOO23386.1 285 KTAAEADVAIVFVATS---SSEGHDRGSLSFDGNADELVAKVAASGVARTVVTAVAPGAALTPW-RNSVDAITFGFMPGQEYGNALADVLFGDV 374
                      ****************...***************************77555555555555779*.77*************************** PP

                      ---B--SS-EESSSGGG................................S.-----SETTTT-BCH CS
                      xxxxxxxxxxxxxxxxxxxxxxxxx..xx...................xx.xxxxxxxxxxxxxxx RF
  Glyco_hydro_3_C 161 nPsGkLpvtfpksledlpddyyeek..dt...................yk.fegtplYpeGlglsY 204
                      nPs+kLp+t p +++++  +++e++                       y+ +  tp +p+G+glsY
       KOO23386.1 375 NPSAKLPLTLPTRENEV--NFTESDwpGVgkpqrvatysekllvgyrwYDaHGVTPAFPFGHGLSY 438
                      ************99987..56666644113445666777788888778777778888********9 PP

>> Glyco_hydro_3  Glycosyl hydrolase family 3 N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   73.7   0.0   2.7e-24   1.6e-20     152     318 ..       1     154 [.       1     154 [. 0.94

  Alignments for each domain:
  == domain 1  score: 73.7 bits;  conditional E-value: 2.7e-24
                    HHHHHHHHHHHTT-EEEEEEETTGTT-SSETTTSEEB----HHHHHHTTHHHHHHHHHTT-SEEEE---B-TTT---......BGGG-HHHHIIII CS
  Glyco_hydro_3 152 laaamvkGlqgagvaatvKHFpghGdgavdshkelptvdhseeelrevdlvpfqaaieagvdsVMtaHvqfpaldgt......patgskklltdvL 241
                    +++  v+G+q++gv+a +KH      +++++++  ++ + +e+  +e +  pf+ ai+a v+s M +   +++++ +      +   +++ l+  L
     KOO23386.1   1 MVQPAVQGIQSKGVVANAKHWVN---NNQETDRSSVDEEVDERTRFEMYYPPFEGAIAADVGSFMCS---YNKINAKsvpgsgWSCENPETLQRDL 90 
                    567789****************9...59***************************************...*****9999999999999******** PP

                    IIIS---SEEEES-TTSHHHHCCS-HHHHHHHHHHHT-SBEES-S---SGHHHHHHHHHTTSS-HHHHHHHHHHHHH CS
  Glyco_hydro_3 242 RkelGFdGvvvsDalamkeiadrggkeeavvlaLkAGvDilLvpeertseikalkkavkeGeltearidesvrrvlr 318
                    +++lGF+G v+sD+                 ++++AG+D+++  +++    +a++kav++G+++ +r+d+++ r+l+
     KOO23386.1  91 KDRLGFKGWVMSDWG------------ATHSMSIMAGLDQEMPGSSYM-GDDAIAKAVQSGSVPDSRVDDAALRILT 154
                    ***************............4456899*********99995.99************************96 PP

>> Fn3-like  Fibronectin type III-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.0   0.0   4.7e-18   2.8e-14       3      71 .]     469     536 ..     467     536 .. 0.98

  Alignments for each domain:
  == domain 1  score: 53.0 bits;  conditional E-value: 4.7e-18
                 EEEEEEESS-STTSBS-EEEEEEEEEE-TT-EEEEEEEEECGGG-EEETTTTEEE--SCEEEEEEESSS CS
    Fn3-like   3 vqlYvsdpessverpvkeLkgFekveLapGesktvtftldrkdlsvwdeekqkwvvepGeytvlvgtss 71 
                  qlY+++p + +++p+ +LkgF+ +  +pG    vtf+ld ++ s+wd+e+++w   +G++ v vg ss
  KOO23386.1 469 PQLYLTFPAA-AGEPPFQLKGFTSIPMPPGTFVNVTFPLDLRSRSIWDVETHSWAEVKGTFGVTVGFSS 536
                 7********9.9******************************************************998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (549 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       294  (0.016398); expected 358.6 (0.02)
Passed bias filter:                      253  (0.0141112); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.54u 0.25s 00:00:00.79 Elapsed: 00:00:00.45
# Mc/sec: 3700.36
//
Query:       KOO23387.1  [L=1678]
Description: filamin-c isoform 4 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.1e-64  215.7   0.0    5.9e-16   59.2   0.0    7.4  7  Filamin        Filamin/ABP280 repeat
    5.8e-07   29.7   8.7       0.57   10.5   0.1    6.3  5  Invasin_D3     Invasin, domain 3
    1.4e-05   25.6   2.7       0.18   12.4   0.1    4.3  5  YtkA           YtkA-like
  ------ inclusion threshold ------
       0.23   10.9   0.0       0.76    9.2   0.0    1.8  1  Neurexophilin  Neurexophilin


Domain annotation for each model (and alignments):
>> Filamin  Filamin/ABP280 repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.3   0.0   3.6e-12   1.6e-08       7     103 .]      46     136 ..      41     136 .. 0.90
   2 !   59.2   0.0   1.3e-19   5.9e-16       2     102 ..     144     273 ..     143     274 .. 0.79
   3 !    9.0   0.0   0.00054       2.4      18     101 ..     328     418 ..     312     419 .. 0.72
   4 ?    1.6   0.0      0.11   4.9e+02      15      90 ..     685     763 ..     670     766 .. 0.67
   5 !   14.3   0.0   1.2e-05     0.053      18     102 ..     836     928 ..     792     929 .. 0.78
   6 !   46.3   0.0   1.3e-15   5.8e-12       5     102 ..     940    1037 ..     936    1038 .. 0.87
   7 !   39.4   0.0   1.9e-13   8.5e-10       3      99 ..    1286    1379 ..    1284    1380 .. 0.93

  Alignments for each domain:
  == domain 1  score: 35.3 bits;  conditional E-value: 3.6e-12
                 EEEESGGGTEEETTS-EEEEEEESSSTSCCCSTTS..EEEEE..ESSTS.....EEEEEEEE-SSSEEEEEE--SSSCEEEEEEEETTC..E-TTSSEE CS
     Filamin   7 skvnGpGieasvagesltFtvytkdakgeksevggdelqvrivtgsphgaatkssvkievvdnedgtytvsYtpeepgtyrvsvkldgk..higgsPfd 103
                 s+++G+G+  +   +   Ft+ ++d   + ++ + ++++v +     hg++    vk  ++ n+dg+  v+Y ++ +gty+v+++ ++k  h+ gsPf+
  KOO23387.1  46 STADGEGLTMAFPRQTGRFTIRARDRLFRAVPCSTEPFHVVV-----HGKQ---IVKPTITPNKDGSIGVEYSIAVCGTYKVHIRGGKKgtHVLGSPFT 136
                 7899****999999999*************************.....6651...47889**************************966444******96 PP

  == domain 2  score: 59.2 bits;  conditional E-value: 1.3e-19
                 CSTTSEEEESGGGTEEETTS-EEEEEEESSSTSCCCSTTS..EEEEE..........ESSTS...............................EEEEEE CS
     Filamin   2 vdpskskvnGpGieasvagesltFtvytkdakgeksevggdelqvriv........tgsphgaatk..................s........svkiev 66 
                 v+p ++ ++G G+++++age++tFt + +d +ge++ +g  ++ v                    +                  +         ++++v
  KOO23387.1 144 VQPCQCAADGAGLRKARAGEQATFTLHRRDVNGEPIAKGTARFIVAFSlaegdreyA--------EkqkeargayqtaattkelQdkggnadsHFTTKV 234
                 57889***************************************9998655444440........23344444444444444440445555668999** PP

                 EE-SSSEEEEEE--SSSCEEEEEEEETT...CE-TTSSE CS
     Filamin  67 vdnedgtytvsYtpeepgtyrvsvkldg...khiggsPf 102
                 vd++dgt+ v+Yt +++g+yr++v+l+     +i gsPf
  KOO23387.1 235 VDKGDGTFSVTYTTQRSGRYRLHVTLGLaapVEIHGSPF 273
                 **************************655558******9 PP

  == domain 3  score: 9.0 bits;  conditional E-value: 0.00054
                 ETTS-EEEEEEESSSTSCCCSTTS..EEEEE..ESSTS...................EEEEEEEE-SSSEEEEEE--SSSCEEEEEEEETTCE-TTSS CS
     Filamin  18 vagesltFtvytkdakgeksevggdelqvrivtgsphgaatks..............svkievvdnedgtytvsYtpeepgtyrvsvkldgkhiggsP 101
                 +ag++    v ++da g+++         + +t +++++   s              s++  vv    g  +v+  +  + +++++v+++g  i+ sP
  KOO23387.1 328 IAGKPFFLRVLARDALGNDVSL-----APEAKTDESSSS--HSvadfkavltaasgrSLPLSVVRLPCGQLEVRAVAFCAEPHTLHVSYNGVAIRRSP 418
                 7788888888888888887764.....333322222222..112333445555556699999***********************************9 PP

  == domain 4  score: 1.6 bits;  conditional E-value: 0.11
                 TEEETTS-EEEEEEESSSTSCCCSTTS..EEEEE..ESSTS..............EEEEEEEE-SSSEEEEEE--SSSCEEEEEE CS
     Filamin  15 easvagesltFtvytkdakgeksevggdelqvrivtgsphgaatks.........svkievvdnedgtytvsYtpeepgtyrvsv 90 
                 e+ +ag+s +  + + d+ g++++ gg   +v++     + a +++          ++ + +d+ dg+++v+ t  ++g++++ +
  KOO23387.1 685 EPPKAGQSFGLGILSFDKFGNPLRTGG---NVKLS---LKTAVSPPpsplptqppPMTFQHIDHMDGMHEVRITTFRAGDHQLML 763
                 555777777777777777788777654...44442...22222221233444556788899********************9865 PP

  == domain 5  score: 14.3 bits;  conditional E-value: 1.2e-05
                 ETTS-EEEEEEESSSTSCCCSTTS.....EEEEE..ESSTS............EEEEEEEE-SSSEEEEEE--SSSCEEEEEEEETTCE-TTSSE CS
     Filamin  18 vagesltFtvytkdakgeksevgg...delqvrivtgsphgaatk.s......svkievvdnedgtytvsYtpeepgtyrvsvkldgkhiggsPf 102
                 +ag++++   ++ d++g+ ++  +   + lq+++  ++  g++++ +      ++ +e + n dg+   +Y p  +g+ ++s+kl+  h+ gsP 
  KOO23387.1 836 RAGQWASALLQCSDCYGNLRPAIAaiaSGLQLEL--TEGLGSEDSlGlplppsQLRTEQRLNADGSIWLRYAPLGCGPRSLSIKLQSAHVVGSPL 928
                 8999999999********9998777778888888..4443443333145556688999************************************6 PP

  == domain 6  score: 46.3 bits;  conditional E-value: 1.3e-15
                  TSEEEESGGGTEEETTS-EEEEEEESSSTSCCCSTTS..EEEEE..ESSTS.....EEEEEEEE-SSSEEEEEE--SSSCEEEEEEEE...TTCE-T CS
     Filamin    5 skskvnGpGieasvagesltFtvytkdakgeksevggdelqvrivtgsphgaatkssvkievvdnedgtytvsYtpeepgtyrvsvkl...dgkhig 98  
                  +++ + G+G       e++ F v +kd +g++++ gg+++ v i+ ++++g a   +v   v+d  dg+y v+Yt+e+ g+++vsv +   dg + +
  KOO23387.1  940 RACELVGEGRSFCHQHEKANFRVLAKDGYGNQLTRGGEKFVVLIRREGNEGTA---DVSSSVRDDCDGSYAVEYTCETIGRHYVSVHHgsaDGDELP 1033
                  6788899994333455****************************777776764...78889*************************9977788**** PP

                  TSSE CS
     Filamin   99 gsPf 102 
                  gsPf
  KOO23387.1 1034 GSPF 1037
                  ***9 PP

  == domain 7  score: 39.4 bits;  conditional E-value: 1.9e-13
                  STTSEEEESGGGTEEETTS-EEEEEEESSSTSCCCSTTS..EEEEE..ESSTS.....EEEEEEEE-SSSEEEEEE--SSSCEEEEEEEETTCE-TT CS
     Filamin    3 dpskskvnGpGieasvagesltFtvytkdakgeksevggdelqvrivtgsphgaatkssvkievvdnedgtytvsYtpeepgtyrvsvkldgkhigg 99  
                  +++ ++v G+ i ++ +g++  F  ++ d  g+ +e gg+++ v++ ++ p g ++    k++v+d ++gty  ++ p+ +g y++ v l+++++g+
  KOO23387.1 1286 HANTCTVGGDSIDKGFVGQPFDFWLKAYDGAGNVIETGGEKVSVKV-INMPGGMQQA--PKVNVRDDGNGTYGLKFVPTVAGIYTLAVVLGKEQVGE 1379
                  6889******************************************.9999887544..479*******************************9985 PP

>> Invasin_D3  Invasin, domain 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.6   0.9    0.0021       9.4      48      80 ..     222     260 ..     157     269 .. 0.68
   2 ?   -2.3   0.1       1.2   5.5e+03      21      38 ..     444     461 ..     434     485 .. 0.73
   3 ?    0.2   0.0      0.21   9.2e+02      30      77 ..     701     762 ..     699     779 .. 0.62
   4 !    7.7   0.0   0.00099       4.4      21      79 ..     957    1023 ..     953    1032 .. 0.75
   5 !   10.5   0.1   0.00013      0.57      26      84 ..    1310    1376 ..    1308    1387 .. 0.74

  Alignments for each domain:
  == domain 1  score: 6.6 bits;  conditional E-value: 0.0021
  Invasin_D3  48 ag......tlsavtdngdGtytatLtattagtatitptv 80 
                 +g       +++v d+gdGt ++t t +++g + + +t+
  KOO23387.1 222 KGgnadshFTTKVVDKGDGTFSVTYTTQRSGRYRLHVTL 260
                 222444443356778888888888888888888888776 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 1.2
  Invasin_D3  21 tstltvtlkDangnpvsg 38 
                    +t+ ++D +gn v+ 
  KOO23387.1 444 RVAITAIARDVFGNEVGA 461
                 567999999999999765 PP

  == domain 3  score: 0.2 bits;  conditional E-value: 0.21
  Invasin_D3  30 Dangnp.vsgltvtfsttsag........tlsavt.........dngdGtytatLtattagtatit 77 
                 D++gnp  +g +v++s + a+        t    +         d+ dG+ ++ +t  +ag  ++ 
  KOO23387.1 701 DKFGNPlRTGGNVKLSLKTAVspppsplpT----QpppmtfqhiDHMDGMHEVRITTFRAGDHQLM 762
                 8999**767789999977344333333331....02233355557778888888887777776665 PP

  == domain 4  score: 7.7 bits;  conditional E-value: 0.00099
  Invasin_D3   21 tstltvtlkDangnp.vsg.lt.vtfstt..sag...tlsavtdngdGtytatLtattagtatitpt 79  
                  ++   v +kD  gn  ++g ++ v++  +  ++g   + s+v+d+ dG y ++ t +t+g   ++++
  KOO23387.1  957 KANFRVLAKDGYGNQlTRGgEKfVVLIRRegNEGtadVSSSVRDDCDGSYAVEYTCETIGRHYVSVH 1023
                  66678999*******8666255444443345455777667999****************99988876 PP

  == domain 5  score: 10.5 bits;  conditional E-value: 0.00013
  Invasin_D3   26 vtlkDangnp..vsgltvtfstt..sag..tls...avtdngdGtytatLtattagtatitptvnGva 84  
                  +++ D +gn   ++g++v+++      g  +     +v+d+g+Gty  ++  t ag +t+ + ++ + 
  KOO23387.1 1310 LKAYDGAGNVieTGGEKVSVKVInmPGGmqQ-ApkvNVRDDGNGTYGLKFVPTVAGIYTLAVVLGKEQ 1376
                  6789******988889999995545555532.1333577*********************99884344 PP

>> YtkA  YtkA-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.0       2.3   1.1e+04      57      85 ..      93     121 ..      88     122 .. 0.83
   2 ?    0.8   0.0      0.17   7.6e+02      17      74 ..     159     215 ..     155     219 .. 0.70
   3 !    8.4   0.0   0.00075       3.4      49      85 ..     222     258 ..     217     259 .. 0.89
   4 ?   -1.4   0.0      0.84   3.8e+03      56      86 .]     993    1023 ..     965    1023 .. 0.76
   5 !   12.4   0.1     4e-05      0.18      38      85 ..    1325    1370 ..    1309    1371 .. 0.86

  Alignments for each domain:
  == domain 1  score: -2.8 bits;  conditional E-value: 2.3
        YtkA  57 tkvelkesedGvYeaevnfsmeGtWqvql 85 
                 +k + ++ +dG   +e+ +   Gt+ v++
  KOO23387.1  93 VKPTITPNKDGSIGVEYSIAVCGTYKVHI 121
                 567788889****************9986 PP

  == domain 2  score: 0.8 bits;  conditional E-value: 0.17
        YtkA  17 pkagen.tivvt.vtqggkpVedad.vkvefwmpameGmeemttkvelkesedGvYeaevn 74 
                 + age+ t++++ ++ +g+p+ + +  ++ ++  a eG+ e     + ke   G Y++ ++
  KOO23387.1 159 ARAGEQaTFTLHrRDVNGEPIAKGTaRFIVAFSLA-EGDRE--YAEKQKE-ARGAYQTAAT 215
                 567777578998899*******8865777777776.66664..3333333.7799988765 PP

  == domain 3  score: 8.4 bits;  conditional E-value: 0.00075
        YtkA  49 meGmeemttkvelkesedGvYeaevnfsmeGtWqvql 85 
                  +G +++++  ++ +++dG ++++++   +G++++++
  KOO23387.1 222 KGGNADSHFTTKVVDKGDGTFSVTYTTQRSGRYRLHV 258
                 3788999999999999******************998 PP

  == domain 4  score: -1.4 bits;  conditional E-value: 0.84
        YtkA   56 ttkvelkesedGvYeaevnfsmeGtWqvqlh 86  
                  ++  ++ ++ dG Y +e++ +  G+  v++h
  KOO23387.1  993 DVSSSVRDDCDGSYAVEYTCETIGRHYVSVH 1023
                  45556777899*******9999998877776 PP

  == domain 5  score: 12.4 bits;  conditional E-value: 4e-05
        YtkA   38 advkvefwmpameGmeemttkvelkesedGvYeaevnfsmeGtWqvql 85  
                  ++v+v++  + ++Gm+ +  kv + ++++G Y ++   + +G +++ +
  KOO23387.1 1325 EKVSVKVINM-PGGMQ-QAPKVNVRDDGNGTYGLKFVPTVAGIYTLAV 1370
                  4688998888.58999.69************************99876 PP

>> Neurexophilin  Neurexophilin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.2   0.0   0.00017      0.76      77     107 ..     230     260 ..     202     274 .. 0.84

  Alignments for each domain:
  == domain 1  score: 9.2 bits;  conditional E-value: 0.00017
  Neurexophilin  77 ivGkvvDhgnGtfsvffrhnstGqgnvsvsL 107
                     + kvvD g+Gtfsv ++ + +G+ ++ v+L
     KOO23387.1 230 FTTKVVDKGDGTFSVTYTTQRSGRYRLHVTL 260
                    689********************98876655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1678 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       528  (0.0294495); expected 358.6 (0.02)
Passed bias filter:                      313  (0.0174578); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.88u 0.30s 00:00:01.18 Elapsed: 00:00:00.49
# Mc/sec: 10374.91
//
Query:       KOO23388.1  [L=198]
Description: ascorbate-dependent peroxidase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    9.2e-25   87.7   0.1    1.6e-24   86.9   0.1    1.4  1  peroxidase  Peroxidase


Domain annotation for each model (and alignments):
>> peroxidase  Peroxidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   86.9   0.1   8.6e-29   1.6e-24      58     227 ..       2     166 ..       1     168 [. 0.88

  Alignments for each domain:
  == domain 1  score: 86.9 bits;  conditional E-value: 8.6e-29
                 HHHHHHHCTT.....S-HHHHHHHHHHHHHHCTT--..--EE---S-SSGGGS-S.....-..-TS-HHHHHHHHHHHT--HHHHHHH.HGGGGC-EES CS
  peroxidase  58 ldaikakleaacpgvvScADlialaardavelaggplvpvslGRrDatessasev..snlP.dptasvdelrdkfarkgltdeelvaL.sGaHtiGkah 152
                 l++ik ++++a    +S+ADli+la+++a+e aggp  p++ GR+Da +   s++  ++l  +  +++d +r+++a + l+++e vaL +  +t+G++ 
  KOO23388.1   2 LEPIKLQFGNA----LSWADLIVLAGQTAIEVAGGPALPFCGGRTDAADGAGSSLlnEQLLgEVVDTIDLTRERMALLDLSAREYVALvGAQRTLGTNA 96 
                 899******96....*********************88*************9655455554244889999******************77779****** PP

                 HH...........SS-GGGT....HHS........EETS-STHHHHHHCC....................T-EEEHHHHHHHHSCCCHHHHHHCC CS
  peroxidase 153 cssfsrlyaaadpaldaayaaekCasgntelvdldtptkfdnsyfknlle....................krgllrsDqvllsdsetralvekya 227
                               ++ +             + + tp++fdn+yf nl +                    +  +l+sD+ l  d+e+ ++v+++a
  KOO23388.1  97 P-------------VGRDG------------AATATPDSFDNAYFSNLANkqwakmtskqgkleykavgeELYMLASDLTLRFDPELMSIVQEFA 166
                 2.............22222............23349*********************************************************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (198 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       385  (0.0214736); expected 358.6 (0.02)
Passed bias filter:                      357  (0.0199119); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.28s 00:00:00.69 Elapsed: 00:00:00.45
# Mc/sec: 1322.92
//
Query:       KOO23389.1  [L=346]
Description: hypothetical protein Ctob_005644 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.3e-05   23.9   0.0      0.034   14.1   0.0    2.2  2  PAP_fibrillin  PAP_fibrillin
  ------ inclusion threshold ------
      0.053   13.4   0.1      0.088   12.7   0.1    1.2  1  DUF4452        Domain of unknown function (DUF4452)


Domain annotation for each model (and alignments):
>> PAP_fibrillin  PAP_fibrillin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.8   0.0   0.00033         3       2      60 ..      32      86 ..      31      94 .. 0.89
   2 !   14.1   0.0   3.8e-06     0.034     171     197 ..     251     277 ..     247     278 .. 0.89

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 0.00033
  PAP_fibrillin  2 klkrkLldaisgterGlsassddraeieelvkklealnptpaplesldlLdGkWrLlYt 60
                   +lk  L+ + +   rG   s  ++a++ e v++le+++ +  p      L G+W L+ t
     KOO23389.1 32 DLKAALVRLGASSGRGQFFSTAECAKACEYVAQLESVGLPALPS----DLTGTWDLVLT 86
                   68999999999999***********************9887776....489***99977 PP

  == domain 2  score: 14.1 bits;  conditional E-value: 3.8e-06
  PAP_fibrillin 171 akgwLeitYlDedLRIsRGdeGslfvl 197
                    +++ L + YlDe+LR+sR    + fv+
     KOO23389.1 251 KRPLLRTSYLDEELRVSRTPDEHFFVF 277
                    567899*************99999997 PP

>> DUF4452  Domain of unknown function (DUF4452)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.1   9.9e-06     0.088      74     122 ..     288     337 ..     276     341 .. 0.83

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 9.9e-06
     DUF4452  74 ssssdRssLssgsPessPlqtqvqpqqvapslslssassayipa.syqsq 122
                    s RssL s  P + P +++v+++ +a +l l+  ++ y +   yq+ 
  KOO23389.1 288 RERSSRSSLQSTPPGAVPESRRVSSSGMAQTLELDDYPQGYFDEeLYQEG 337
                 56799**********************************99655266654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (346 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       208  (0.0116013); expected 358.6 (0.02)
Passed bias filter:                      196  (0.010932); expected 358.6 (0.02)
Passed Vit filter:                        12  (0.000669307); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.44u 0.26s 00:00:00.70 Elapsed: 00:00:00.42
# Mc/sec: 2468.01
//
Query:       KOO23390.1  [L=128]
Description: short-chain dehydrogenase reductase sdr [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (128 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       267  (0.0148921); expected 358.6 (0.02)
Passed bias filter:                      243  (0.0135535); expected 358.6 (0.02)
Passed Vit filter:                        11  (0.000613531); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.21s 00:00:00.59 Elapsed: 00:00:00.39
# Mc/sec: 992.79
//
Query:       KOO23391.1  [L=368]
Description: sugar phosphate permease [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.7e-31  108.0  19.6      6e-31  107.6  19.6    1.0  1  MFS_1     Major Facilitator Superfamily


Domain annotation for each model (and alignments):
>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  107.6  19.6   3.4e-35     6e-31       3     261 ..      79     336 ..      77     356 .. 0.89

  Alignments for each domain:
  == domain 1  score: 107.6 bits;  conditional E-value: 3.4e-35
       MFS_1   3 laaflsalarsilgpalplalaedlgispseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalg.lllllfasslwlllvlrvlqGlgag 100
                 +a++   + r ++g++lp a+ ++lg s+ ++g+l ++  ++++  s++ G+++d + ++ +l++gl+l+a++ ++++  + sl+++++l+   G+ ++
  KOO23391.1  79 VAYMGFLACRKNYGLWLP-AVVSELGHSKGQAGILGSAMEFTYGTCSFLNGAVIDTYPAKHLLIAGLVLSAVAnVCIAG-TDSLPMMIALWTANGAVQS 175
                 677788888999******.9*************************************9999************544444.36777************** PP

       MFS_1 101 alfpagaaliadwfpk.eergraigllsagfslGailgpllggllasslgWravfyilaivsllafvlfllllpeepperkrkspkeeekgtgpaplvp 198
                 +++p++ +++ +wfp+  +rg  ++lls++ ++Ga+l pl  ++++s  gWra+ ++ a+++   ++l +  l  +p + +  +p ++ +++ +a l+ 
  KOO23391.1 176 VGWPSITTVFLAWFPDpAQRGAWYSLLSTCQNAGAALVPLCVSAFVSTHGWRAALLAPAAATTATALLLATALHGSPAAAAGTPPSTK-AKPTKADLAH 273
                 ****************99*************************************************888888888888777777777.3444444444 PP

       MFS_1 199 .awkallkdpvlwillialllfffgfsglltllplylqevlglsglllaglllallalvgaila 261
                    ++++ +  lw++ +a ++++++ + +  ++ lyl+e  g++ l +a+  l l  l+g++++
  KOO23391.1 274 sMRQHVFLNHRLWLMAVAYFGVSMVRTCIQDWTSLYLNEAKGMP-LATAARCLFLWELGGFGGC 336
                 788899999999*999999999999999****************.9999988999988888776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (368 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       505  (0.0281667); expected 358.6 (0.02)
Passed bias filter:                      298  (0.0166211); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.25s 00:00:00.71 Elapsed: 00:00:00.41
# Mc/sec: 2717.73
//
Query:       KOO23392.1  [L=805]
Description: importin 11 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (805 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       452  (0.0252106); expected 358.6 (0.02)
Passed bias filter:                      318  (0.0177366); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.63u 0.25s 00:00:00.88 Elapsed: 00:00:00.42
# Mc/sec: 5700.60
//
Query:       KOO23393.1  [L=279]
Description: protein bem46 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    7.6e-07   29.9   4.8    1.6e-06   28.9   4.8    1.6  1  Abhydrolase_6  Alpha/beta hydrolase family
    1.7e-06   27.9   0.1    2.8e-06   27.2   0.1    1.3  1  Abhydrolase_1  alpha/beta hydrolase fold
    8.5e-05   21.9   0.0    0.00014   21.3   0.0    1.3  1  Hydrolase_4    Serine aminopeptidase, S33
    0.00022   20.3   0.0    0.00041   19.4   0.0    1.4  1  DUF818         Chlamydia CHLPS protein (DUF818)
  ------ inclusion threshold ------
       0.03   14.1   0.0      0.046   13.5   0.0    1.2  1  Abhydrolase_2  Phospholipase/Carboxylesterase
      0.059   12.8   0.0       0.12   11.8   0.0    1.5  1  Peptidase_S9   Prolyl oligopeptidase family


Domain annotation for each model (and alignments):
>> Abhydrolase_6  Alpha/beta hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.9   4.8   5.4e-10   1.6e-06      11     206 ..      55     246 ..      45     268 .. 0.52

  Alignments for each domain:
  == domain 1  score: 28.9 bits;  conditional E-value: 5.4e-10
                    ...GC...HHHHHHHHCCTCEEEEE--TTSTS-GGCS--HHH.CHHHHHHHCCTT......TTSEEEEEETCHHHHHHHHHHCC...EE.EEES-. CS
  Abhydrolase_6  11 assWl...vapLaallaagvhvlapDlpGhGrsdpppldled.ladlaalldelaa....gggpvvlvGHSlGGalalaaapla.lvvg.vlldpp 96 
                     + Wl   + p a+ ++ g+  la+ ++G Grs+++ + +ed l+d+ a +++l++     +  + ++G S GGala+++++++    g ++ +  
     KOO23393.1  55 YEFWLapyFEPYARDSRLGF--LAFNFRGVGRSEGAVTCVEDmLLDIGACVESLVMrrgvKPEHILIHGFSIGGALAALYLASPlAMPGvCMTSD- 147
                    56685122444455555558..********************99**********9998877777799************3333342334233333. PP

                    .----TTTS----TTHHHHHH..TT-CCCCHCCHS-HSCCCCHHHC...CCCHCHCCCGHHHHCCHHCHTTCCHHTT-TTGCEEECTT-CHHHHCH CS
  Abhydrolase_6  97 ptalpagllaaalelllalla..llrllawlsreplprlfladeda...daawrarlarlaallaglgllpaaawadlpvpllvlggeDplvprll 187
                          ++++aa++++++++a  ++++  +l+      lf a   +     a +a+ ++  + ++ l +++a+++  + ++  +    ++lv+   
     KOO23393.1 148 --RSFRTFAHAAFSIVRGFGAavAEPHGSFLA----VYLFKA---TcweLDAEAAWASGRIQGRKVLVYNRADNIVCYAAAS-L---HNALVQ--Q 228
                    ..444444555555555555522222233331....112222...1111222222222222333333333333333333333.1...133333..2 PP

                    HCCCHSTTEEETCE...SS CS
  Abhydrolase_6 188 erllaqagarlpvvlpgaG 206
                     +ll+ ++a+++v+l++aG
     KOO23393.1 229 PALLQ-DVAVIEVTLRDAG 246
                    23333.4444444444444 PP

>> Abhydrolase_1  alpha/beta hydrolase fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.2   0.1   9.4e-10   2.8e-06       7      92 ..      49     134 ..      44     143 .. 0.79

  Alignments for each domain:
  == domain 1  score: 27.2 bits;  conditional E-value: 9.4e-10
                    -STTTCGGGGTTGHHHHHHHHTTSEEEEEEETTSTTSSSTTTGB.CHHSHHHHHHHHH.HH.HHHCTTSSEEEEEETHHHHHHHHHHH CS
  Abhydrolase_1   7 hGlpgssdvwaerglapaLakdgfdvillDlrGvgySspapacinddygtasvaddld.ri.ldalgddkltlvGhSmGGmialayaa 92 
                     G     + w ++ + p+  +++  +++++ rGvg+S+ a +c+  +  + ++ ++++  + +   + +++ + G+S GG++a+ y+a
     KOO23393.1  49 GGNMQIYEFWLAPYFEPYARDSRLGFLAFNFRGVGRSEGAVTCV--EDMLLDIGACVEsLVmRRGVKPEHILIHGFSIGGALAALYLA 134
                    444444444555555555555599*******************5..556778******7336************************98 PP

>> Hydrolase_4  Serine aminopeptidase, S33
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.3   0.0   4.6e-08   0.00014      34      96 ..      74     135 ..      68     146 .. 0.85

  Alignments for each domain:
  == domain 1  score: 21.3 bits;  conditional E-value: 4.6e-08
  Hydrolase_4  34 vyalDhrGhGrsegkrghvpsfddyvdDlaafvekvkeehpel..plfllGhSmGGliallyllr 96 
                  ++a++ rG Grs    g v+ ++d++ D+ a ve ++ + + +   + + G S GG++a+lyl+ 
   KOO23393.1  74 FLAFNFRGVGRS---EGAVTCVEDMLLDIGACVESLVMRRGVKpeHILIHGFSIGGALAALYLAS 135
                  7899********...6678899***************7777665678889************965 PP

>> DUF818  Chlamydia CHLPS protein (DUF818)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.4   0.0   1.4e-07   0.00041     166     274 ..      66     170 ..      42     213 .. 0.81

  Alignments for each domain:
  == domain 1  score: 19.4 bits;  conditional E-value: 1.4e-07
      DUF818 166 lakllganilvfnYPGvmsskGeit.renlakayqaCvrYLrDkeqGPkakeiiayGYsLGtlvqaeaLskevvdgsdgvsWivvkDRgprslaavakq 263
                  a+ ++   l fn+ Gv +s+G +t  e++     aCv  L     G k ++i+ +G+s+G+ + a  L    +         +  DR+ r  a +a++
  KOO23393.1  66 YARDSRLGFLAFNFRGVGRSEGAVTcVEDMLLDIGACVESLVM-RRGVKPEHILIHGFSIGGALAALYLASPLAMPGV----CMTSDRSFRTFAHAAFS 159
                 6778888899*************98469*************85.68*******************9999987766544....56789999999999999 PP

      DUF818 264 flkkigkliak 274
                 +++  g ++a+
  KOO23393.1 160 IVRGFGAAVAE 170
                 99888888775 PP

>> Abhydrolase_2  Phospholipase/Carboxylesterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.0   1.5e-05     0.046      98     133 ..     108     142 ..      90     155 .. 0.76

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 1.5e-05
                    HHTT--GGGEEEEEETHHHHHHHHHHHT-SS--SEE CS
  Abhydrolase_2  98 lkkgipssriiigGFSqGaalalylaltlpkklggi 133
                    +  g++ ++i+i GFS G+ala +l l++p+ + g+
     KOO23393.1 108 MRRGVKPEHILIHGFSIGGALA-ALYLASPLAMPGV 142
                    5678***************997.3445555555555 PP

>> Peptidase_S9  Prolyl oligopeptidase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0     4e-05      0.12      47      82 ..      98     133 ..      78     138 .. 0.89

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 4e-05
                   HHHHHHHHHHHTTS--GGGEEEEEETHHHHHHHHHH CS
  Peptidase_S9  47 DfiaaaealakegyvdserlaitGgSyGGyltgaal 82 
                   D+ a++e l+ +  v++e++ i+G S GG l++  l
    KOO23393.1  98 DIGACVESLVMRRGVKPEHILIHGFSIGGALAALYL 133
                   7889**************************998876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (279 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       294  (0.016398); expected 358.6 (0.02)
Passed bias filter:                      263  (0.014669); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.43u 0.29s 00:00:00.72 Elapsed: 00:00:00.43
# Mc/sec: 1933.80
//
Query:       KOO23394.1  [L=110]
Description: hypothetical protein Ctob_004285 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
  ------ inclusion threshold ------
      0.026   14.6   0.0        2.1    8.4   0.0    2.8  1  DnaJ_C       DnaJ C terminal domain
      0.062   13.6   0.4         15    5.9   0.0    3.0  3  NPCBM_assoc  NPCBM-associated, NEW3 domain of alpha-galactosi


Domain annotation for each model (and alignments):
>> DnaJ_C  DnaJ C terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.4   0.0   0.00023       2.1      28      56 ..      50      78 ..       7     107 .. 0.61

  Alignments for each domain:
  == domain 1  score: 8.4 bits;  conditional E-value: 0.00023
                ....TEEEEEE-TT--TT-EEEETT-SSS CS
                xxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
      DnaJ_C 28 kkekktlevkipaGikdgqkirlegeGde 56
                ++e + +e+++p+  k g+k+r++  G e
  KOO23394.1 50 HNEGDLFELEVPPNAKPGMKLRFSIPGTE 78
                22222566666666666666666655553 PP

>> NPCBM_assoc  NPCBM-associated, NEW3 domain of alpha-galactosidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.6   0.0    0.0087        78      57      69 ..      15      27 ..       8      34 .. 0.82
   2 ?    1.0   0.0     0.058   5.2e+02      57      69 ..      56      68 ..      32      75 .. 0.73
   3 ?    5.9   0.0    0.0017        15      54      69 ..      78      93 ..      75     101 .. 0.82

  Alignments for each domain:
  == domain 1  score: 3.6 bits;  conditional E-value: 0.0087
  NPCBM_assoc 57 vkVtppagaaaGd 69
                 v++t+p+ga++G 
   KOO23394.1 15 VEITVPEGAEPGR 27
                 789********97 PP

  == domain 2  score: 1.0 bits;  conditional E-value: 0.058
  NPCBM_assoc 57 vkVtppagaaaGd 69
                 +++ +p++a++G 
   KOO23394.1 56 FELEVPPNAKPGM 68
                 6788999999986 PP

  == domain 3  score: 5.9 bits;  conditional E-value: 0.0017
  NPCBM_assoc 54 eatvkVtppagaaaGd 69
                 e tv++t+p+ga++G 
   KOO23394.1 78 EETVMITVPEGAEPGR 93
                 5699**********97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (110 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       187  (0.01043); expected 358.6 (0.02)
Passed bias filter:                      182  (0.0101512); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.39u 0.24s 00:00:00.63 Elapsed: 00:00:00.41
# Mc/sec: 797.33
//
Query:       KOO23395.1  [L=234]
Description: hypothetical protein Ctob_004286 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.18   12.1   0.0         24    5.3   0.0    3.3  3  NUMOD1    NUMOD1 domain


Domain annotation for each model (and alignments):
>> NUMOD1  NUMOD1 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.3   0.0    0.0013        24      20      30 ..      28      38 ..      27      40 .. 0.87
   2 ?    1.5   0.0     0.021   3.8e+02      20      29 ..     145     154 ..     144     154 .. 0.87
   3 ?    0.5   0.0     0.045   8.1e+02      20      29 ..     201     210 ..     200     211 .. 0.88

  Alignments for each domain:
  == domain 1  score: 5.3 bits;  conditional E-value: 0.0013
      NUMOD1 20 reAakyLgish 30
                +eAakyLg+++
  KOO23395.1 28 TEAAKYLGVDM 38
                79******986 PP

  == domain 2  score: 1.5 bits;  conditional E-value: 0.021
      NUMOD1  20 reAakyLgis 29 
                 +eAak+Lg++
  KOO23395.1 145 TEAAKFLGVD 154
                 79******85 PP

  == domain 3  score: 0.5 bits;  conditional E-value: 0.045
      NUMOD1  20 reAakyLgis 29 
                 +eAa++Lg++
  KOO23395.1 201 TEAAMHLGVD 210
                 79******96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (234 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       321  (0.017904); expected 358.6 (0.02)
Passed bias filter:                      245  (0.013665); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.23s 00:00:00.63 Elapsed: 00:00:00.39
# Mc/sec: 1808.34
//
Query:       KOO23396.1  [L=352]
Description: hypothetical protein Ctob_004287 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.37   10.1  12.2       0.59    9.4  12.2    1.2  1  DUF4407   Domain of unknown function (DUF4407)
        2.3    8.4   6.9        5.4    7.2   6.9    1.7  1  CREPT     Cell-cycle alteration and expression-elevated prote
        3.2    8.0   9.7          9    6.6   1.5    3.9  3  AT_hook   AT hook motif


Domain annotation for each model (and alignments):
>> DUF4407  Domain of unknown function (DUF4407)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4  12.2   9.8e-05      0.59     128     238 ..      36     149 ..      24     162 .. 0.65

  Alignments for each domain:
  == domain 1  score: 9.4 bits;  conditional E-value: 9.8e-05
     DUF4407 128 aaaltaelaeleaqiaalqaeidaaearldalraeaqkeldgtk...gtgttgvaGkgpaakekkaqldaaqaelaelkakld.atarlaalraelael 222
                 +++ +++lae++aq+++ qa+++++ a+++++   + + +         +    +  g++++  k+  daa ++ ae  ++l+ +t+r++a r+e++ +
  KOO23396.1  36 DDSVRQRLAEIRAQQQKEQAAVATKLAQRAEEAGRVVEATYESLckeA-QGRVAKWAGKRMQVTKRVSDAAARREAETLSELQrKTERVEAWRQEQEVV 133
                 344789999999999999999999988888887777655554333431.22223334444444444444444444444444444688888888888888 PP

     DUF4407 223 eaerakeraasqaaaa 238
                 +++ra++ a+ +a+aa
  KOO23396.1 134 ARQRAEALAKERAEAA 149
                 8888888888887765 PP

>> CREPT  Cell-cycle alteration and expression-elevated protein in tumour
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.2   6.9    0.0009       5.4      15     115 ..      34     129 ..      27     141 .. 0.65

  Alignments for each domain:
  == domain 1  score: 7.2 bits;  conditional E-value: 0.0009
       CREPT  15 ssdaavReriaklPpevsdvsllekikdkeeaekllkqveealell.aeYnkrLeaeleeRkklakmledfleaqkellakaeekleelkeklekvksv 112
                 s d +vR+r+a+  ++ ++ + +   k  + ae+  + ve  +e l +e  +r ++   +R +++k ++d      +++++++e+l+el++k e+v++ 
  KOO23396.1  34 SRDDSVRQRLAEIRAQQQKEQAAVATKLAQRAEEAGRVVEATYESLcKEAQGRVAKWAGKRMQVTKRVSD------AAARREAETLSELQRKTERVEAW 126
                 7788888888887777666666555555555555555555555433245555555555555555555554......45567778899999999999888 PP

       CREPT 113 rke 115
                 r+e
  KOO23396.1 127 RQE 129
                 776 PP

>> AT_hook  AT hook motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6   1.5    0.0015         9       5      12 ..      16      23 ..      16      24 .. 0.89
   2 ?    3.0   0.2     0.022   1.3e+02       6      12 ..     158     164 ..     158     165 .. 0.88
   3 ?    1.4   0.1     0.071   4.3e+02       4      10 ..     340     346 ..     339     349 .. 0.78

  Alignments for each domain:
  == domain 1  score: 6.6 bits;  conditional E-value: 0.0015
     AT_hook  5 GRPrKaat 12
                GRPrKaa+
  KOO23396.1 16 GRPRKAAP 23
                9*****97 PP

  == domain 2  score: 3.0 bits;  conditional E-value: 0.022
     AT_hook   6 RPrKaat 12 
                 RP+Ka++
  KOO23396.1 158 RPPKAHN 164
                 9***987 PP

  == domain 3  score: 1.4 bits;  conditional E-value: 0.071
     AT_hook   4 RGRPrKa 10 
                  GRP+ +
  KOO23396.1 340 AGRPASS 346
                 5***976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (352 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1466  (0.081767); expected 358.6 (0.02)
Passed bias filter:                      536  (0.0298957); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.53u 0.27s 00:00:00.80 Elapsed: 00:00:00.43
# Mc/sec: 2431.25
//
Query:       KOO23397.1  [L=635]
Description: upf0696 protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    7.7e-20   71.9   0.0    7.7e-20   71.9   0.0    4.3  5  DUF1917   Domain of unknown function (DUF1917)


Domain annotation for each model (and alignments):
>> DUF1917  Domain of unknown function (DUF1917)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.3   0.4   5.3e-05      0.94      58      90 ..      51      79 ..      16     102 .. 0.71
   2 !   71.9   0.0   4.3e-24   7.7e-20     144     245 ..     109     209 ..      90     222 .. 0.87
   3 ?   -1.4   0.5       0.1   1.8e+03      97     142 ..     330     376 ..     309     390 .. 0.62
   4 ?   -2.8   3.6      0.27   4.8e+03     107     158 ..     479     525 ..     469     536 .. 0.54
   5 ?   -6.4   6.4         1   1.8e+04      56      56 ..     538     538 ..     497     615 .. 0.56

  Alignments for each domain:
  == domain 1  score: 9.3 bits;  conditional E-value: 5.3e-05
     DUF1917 58 gspdarqleEsvedFLaRLpPstTkasekgpWi 90
                       ++Esve+FLa  pPs+T+     +Wi
  KOO23397.1 51 DPWVFAMPNESVESFLASFPPSSTEK----SWI 79
                34455679****************53....444 PP

  == domain 2  score: 71.9 bits;  conditional E-value: 4.3e-24
     DUF1917 144 lkrelnkerkeleeeilelAretrvvsGkWmLfvkpeevdevWkkvaeatakneLGiaAkvatsededkkkerLicvyTkDFeDkeDVkRVLekLkelg 242
                 l+   ++   + +e+++++ +e +  sGkWm+f ++ +v+e+W++++ea  +++LG +Akv     +d++++++icvy + F + ++ +RVL  L+  g
  KOO23397.1 109 LSEAWEQCTPKSTESLTRILKEHKYGSGKWMIFAPATDVNEMWERIVEALWDGKLGHSAKVSG-ALTDASQSHVICVYVDPFWETAEMERVLAGLRACG 206
                 555556666777889999999*****************************************9.7788899*************************999 PP

     DUF1917 243 lvk 245
                 + +
  KOO23397.1 207 VED 209
                 865 PP

  == domain 3  score: -1.4 bits;  conditional E-value: 0.1
     DUF1917  97 edeapeeegsdlaklveegtelLqe.leekkqelekenakkkkkska 142
                 ++e+  +++s+ a+l+  g e  ++ le+++++lek+ akk+++++a
  KOO23397.1 330 KKEEAAKKSSAFAALTGIGDEDADAiLEKQRKKLEKRAAKKAAEDAA 376
                 55566666666777777666666541455566666666655553333 PP

  == domain 4  score: -2.8 bits;  conditional E-value: 0.27
     DUF1917 107 dlaklveegtelLqeleekkqelekenakkkkkskaalkrelnkerkeleee 158
                 + ++  ee  e L +  + k+e ++      ++skaa kr  +k ++e++++
  KOO23397.1 479 KKKTAEEEEAEALLAALDVKEETKEG-----GQSKAAAKRAKKKAEEEARKK 525
                 44444444444444444444444444.....455666666666665555543 PP

  == domain 5  score: -6.4 bits;  conditional E-value: 1
     DUF1917  56 y 56 
                 +
  KOO23397.1 538 K 538
                 1 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (635 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2086  (0.116348); expected 358.6 (0.02)
Passed bias filter:                      709  (0.0395449); expected 358.6 (0.02)
Passed Vit filter:                       207  (0.0115455); expected 17.9 (0.001)
Passed Fwd filter:                        99  (0.00552178); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 1.78u 0.42s 00:00:02.20 Elapsed: 00:00:00.62
# Mc/sec: 3092.69
//
Query:       KOO23398.1  [L=265]
Description: hypothetical protein Ctob_004283 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    8.9e-05   22.5   0.0    0.00038   20.4   0.0    1.8  2  DUF179           Uncharacterized ACR, COG1678
    0.00014   21.5   0.1    0.00025   20.6   0.1    1.4  1  Transglut_core2  Transglutaminase-like superfamily


Domain annotation for each model (and alignments):
>> DUF179  Uncharacterized ACR, COG1678
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.4   0.0   4.3e-08   0.00038     100     145 ..      40      86 ..       7      98 .. 0.79
   2 ?   -0.6   0.0      0.13   1.2e+03      77     101 ..     216     243 ..     200     253 .. 0.71

  Alignments for each domain:
  == domain 1  score: 20.4 bits;  conditional E-value: 4.3e-08
                 H.CSTTSCSSEEEEEEEEEECTTHHHHHHHTTSEEEEE-.HHHHHCT CS
      DUF179 100 l.agkagpeklrvflGyagWeagQLeeEieegaWlvvpassedllfe 145
                 +  g a+ +++ +++  + W+++ L+eE+++  Wl ++as+++l+  
  KOO23398.1  40 VsIGAADASEFDFYAAACQWSPDKLREELDAAVWLPAAASAPALCER 86 
                 3335788999*****************************99966555 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 0.13
                 .SSSEEECSTTEEEE-SSHHHHHH...C CS
      DUF179  77 elessleisdglylttsldileal...a 101
                   e++ ++++ ++++ ++d+lea    a
  KOO23398.1 216 ACEAAENLEEAVFWQVQRDVLEAQiriA 243
                 5567788999999999999999875443 PP

>> Transglut_core2  Transglutaminase-like superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.6   0.1   2.8e-08   0.00025      77     153 ..     123     209 ..     120     211 .. 0.90

  Alignments for each domain:
  == domain 1  score: 20.6 bits;  conditional E-value: 2.8e-08
  Transglut_core2  77 vArrlglplegvgfPghflvrvg...........espegevliDPfnaGrllskedleellraalgaeaeltreflapasnrdvltRl 153
                      +Arrlglpl+ v +    ++r             + +++e++iD +++Grl  ++dl ++ + a+ a  +l +e+++++ ++ ++  l
       KOO23398.1 123 LARRLGLPLQLVELELPPVLRSArspryllrlpaQREQEELYIDVLAEGRLRGRHDLPAYASVAMPA-SQLHDEYVRELRPERFILIL 209
                      8*************99999997789999999998888889*********************999876.99*******99999887655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (265 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       402  (0.0224218); expected 358.6 (0.02)
Passed bias filter:                      330  (0.0184059); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.39u 0.25s 00:00:00.64 Elapsed: 00:00:00.38
# Mc/sec: 2087.12
//
Query:       KOO23399.1  [L=302]
Description: hypothetical protein Ctob_004288 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (302 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       643  (0.0358637); expected 358.6 (0.02)
Passed bias filter:                      326  (0.0181828); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.43u 0.21s 00:00:00.64 Elapsed: 00:00:00.36
# Mc/sec: 2493.21
//
Query:       KOO23400.1  [L=414]
Description: kynurenine 3-monooxygenase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    8.3e-08   31.9   0.1    0.00039   19.8   0.0    2.1  2  FAD_binding_3  FAD binding domain
  ------ inclusion threshold ------
       0.25   10.3   0.0       0.38    9.8   0.0    1.2  1  SE             Squalene epoxidase


Domain annotation for each model (and alignments):
>> FAD_binding_3  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.0   0.0   4.1e-05      0.37     143     173 ..      48      78 ..      33      94 .. 0.81
   2 !   19.8   0.0   4.3e-08   0.00039     287     342 ..     211     263 ..     205     270 .. 0.78

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 4.1e-05
                    EECCTTEEEEEEEEEEEE--GTT-HHHHHHT CS
  FAD_binding_3 143 rdketgeeetvrakYlvGaDGgrStvrktlg 173
                       ++g   +++a ++vGaDG r tv+++l 
     KOO23400.1  48 ALVDEGGAFELDAAFVVGADGSRRTVANALV 78 
                    455678888***************9998875 PP

  == domain 2  score: 19.8 bits;  conditional E-value: 4.3e-08
                    EE-GGGTEEE-STTSHHHHHHHHHHHHHHHHHHHHHTTSS-GGGGHHHHHHHHHHH CS
  FAD_binding_3 287 flaGDAaHihpPtgGqGlNtaiqDavnLawkLaavlkGeAkeelLdtYeeerrava 342
                     l GDA+H + P  G+G+N a +D+  L + L ++ +     + L +++++r++ a
     KOO23400.1 211 VLLGDAVHQVKPYFGLGVNAAFEDVAALDRCLDEAPS---MGAALAAFSRQRAPEA 263
                    578************************9988877655...4455666666666655 PP

>> SE  Squalene epoxidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   0.0   4.2e-05      0.38     118     169 ..     196     247 ..     162     274 .. 0.77

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 4.2e-05
          SE 118 pnkflpasknekkGlillGDalnmRHPltggGmtvalnDivllskllkpled 169
                 + +++ ++ + ++  +llGDa+    P  g G+  a++D++ l + l + + 
  KOO23400.1 196 QFRYVGPRLHLRSSTVLLGDAVHQVKPYFGLGVNAAFEDVAALDRCLDEAPS 247
                 556677777778889******************************9988754 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (414 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       511  (0.0285013); expected 358.6 (0.02)
Passed bias filter:                      332  (0.0185175); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.51u 0.22s 00:00:00.73 Elapsed: 00:00:00.42
# Mc/sec: 2972.88
//
Query:       KOO23401.1  [L=406]
Description: developmentally-regulated gtp-binding protein 2-like protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.2e-37  128.2   0.4    2.4e-37  127.2   0.4    1.5  1  MMR_HSR1_Xtn  C-terminal region of MMR_HSR1 domain
    1.9e-20   73.0   0.0    7.1e-20   71.2   0.0    1.9  2  MMR_HSR1      50S ribosome-binding GTPase
      7e-16   58.0   0.2    1.4e-15   57.1   0.2    1.5  1  TGS           TGS domain
    5.3e-10   39.0   0.0      1e-09   38.1   0.0    1.5  1  FeoB_N        Ferrous iron transport protein B
    7.1e-05   22.9   0.0     0.0021   18.1   0.0    2.5  2  Dynamin_N     Dynamin family
  ------ inclusion threshold ------
      0.017   14.7   0.0       0.38   10.3   0.0    2.6  2  GTP_EFTU      Elongation factor Tu GTP binding domain
       0.06   12.3   0.1        0.5    9.3   0.0    2.3  3  MeaB          Methylmalonyl Co-A mutase-associated GTPase Mea


Domain annotation for each model (and alignments):
>> MMR_HSR1_Xtn  C-terminal region of MMR_HSR1 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  127.2   0.4   9.5e-41   2.4e-37       2     106 .]     189     293 ..     188     293 .. 0.98

  Alignments for each domain:
  == domain 1  score: 127.2 bits;  conditional E-value: 9.5e-41
  MMR_HSR1_Xtn   2 gGikitstvkltkldeetvkkilkeykihnaevliredvtvDdlidviegnrvYipclyvlNKiDlisleeldelarepnsvviSaekelnldeLke 98 
                   g ++i+++++l +++e +vk++l+eykih+aevl+red+t+D++id+iegnr+Y++clyv+NKiD+ s+ee+++++++p+++v+S++++ln ++ ke
    KOO23401.1 189 GNVSISASCQLVNITETDVKQLLHEYKIHSAEVLFREDCTIDQFIDIIEGNRKYVRCLYVYNKIDMTSIEECERVCSMPHTMVLSCQMGLNHEAFKE 285
                   7899********************************************************************************************* PP

  MMR_HSR1_Xtn  99 kiweeLnL 106
                   k+we+L+L
    KOO23401.1 286 KLWEYLGL 293
                   ******97 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   71.2   0.0   2.8e-23   7.1e-20       1      99 [.      66     164 ..      66     187 .. 0.87
   2 ?   -1.7   0.0       1.2   3.1e+03      31      86 ..     319     372 ..     312     398 .. 0.50

  Alignments for each domain:
  == domain 1  score: 71.2 bits;  conditional E-value: 2.8e-23
                 EEEEEESTTSSHHHHHHHHHTSTEEESSSTTSSSSEEEEEEEETTEEEEEEECGGCSSHHHHHHHHHHHHHHHHC.TSEEEEEEETTTTCSHHHHHHHH CS
    MMR_HSR1   1 evaivGrpNvGKStLinaltgekaivsdkpgtTrdinegrvklkgkeielvDtpGliegaseekglgkaflalee.adlillvvdaseeklkpldeele 98 
                 +va++G p vGKSt++++ t +k++++++ +tT++ + g +++k+++i+l+D+pG+iegase+kg g+++  + + +dlillvvda ++k +++ ++l 
  KOO23401.1  66 RVALIGFPSVGKSTILSTFTATKSEAASYEFTTLTCIPGIIDYKNTRIQLLDLPGIIEGASEGKGRGRQVIGVAKsCDLILLVVDAGSGKADRQ-RQLL 163
                 69**********************************************************************99978********985555554.3333 PP

                 H CS
    MMR_HSR1  99 e 99 
                 e
  KOO23401.1 164 E 164
                 3 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 1.2
                 TSSSSEEEEEEEETTEEEEEEECGGCSS..HHHHHHHHHHHHHHHHCTSEEEEEEETT CS
    MMR_HSR1  31 gtTrdinegrvklkgkeielvDtpGlie..gaseekglgkaflaleeadlillvvdas 86 
                 g+T +   ++v+  ++ ++  D + +     +++ +++g +   ++e d+i +v + +
  KOO23401.1 319 GCTVEAACKQVH--KSLLVAFDYAMIWGssVKHTPQRVGLKHTLHDE-DVIQIVKK-K 372
                 666666666666..455666666663221223334444444443444.55555554.2 PP

>> TGS  TGS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.1   0.2   5.3e-19   1.4e-15       2      60 .]     295     370 ..     294     370 .. 0.98

  Alignments for each domain:
  == domain 1  score: 57.1 bits;  conditional E-value: 5.3e-19
                 EEEE.TTSSEEE.........EETTB-HHHHHHHHSTTHHHHEEEEEECS.......EEEETTSBB-SSEEEEEEE CS
         TGS   2 rvyt.PdGkvpd.........lprgatveDfAykIhrslakkfiyAlVnG.......qrvgldhvLedgdvveIvt 60 
                 rvyt ++G +pd          ++g tve +++++h+sl  +f yA ++G       qrvgl+h+L d+dv++Iv+
  KOO23401.1 295 RVYTkKQGVKPDfddplvlthGRHGCTVEAACKQVHKSLLVAFDYAMIWGssvkhtpQRVGLKHTLHDEDVIQIVK 370
                 9*************************************************************************97 PP

>> FeoB_N  Ferrous iron transport protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.1   0.0   4.1e-13     1e-09       2      90 ..      66     153 ..      65     175 .. 0.90

  Alignments for each domain:
  == domain 1  score: 38.1 bits;  conditional E-value: 4.1e-13
                 EEEEEESTTSSHHHHHHHHHTTSEEEEESTTSSSEEEEEEEEETTEEEEEEE----SSSSSSSHHHHHHHHHHH.CTSSSEEEEEEEGGG CS
      FeoB_N   2 tvalvGnpnvGkttlfnaltgakqkvgNwpGvtvekkegklklkgkeveivDlPGiYslsayseeekvardfll.eeepdvvvnvvdatn 90 
                 +val+G p vGk+t++ + t +k++ + +  +t     g +++k+++++++DlPGi  ++  se +   r+++   ++ d+++ vvda +
  KOO23401.1  66 RVALIGFPSVGKSTILSTFTATKSEAASYEFTTLTCIPGIIDYKNTRIQLLDLPGI--IEGASEGKGRGRQVIGvAKSCDLILLVVDAGS 153
                 69*****************************************************9..788999999999999548899********964 PP

>> Dynamin_N  Dynamin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.9   0.1     0.081   2.1e+02       1      17 [.      67      83 ..      67     103 .. 0.83
   2 !   18.1   0.0   8.2e-07    0.0021      97     160 ..     107     173 ..      85     176 .. 0.89

  Alignments for each domain:
  == domain 1  score: 1.9 bits;  conditional E-value: 0.081
                EEEEEBTTTTHHHHHHH CS
   Dynamin_N  1 iavvGsqSsGKSSvlna 17
                +a++G  S GKS++l  
  KOO23401.1 67 VALIGFPSVGKSTILST 83
                7999**********976 PP

  == domain 2  score: 18.1 bits;  conditional E-value: 8.2e-07
                 ETTS-SEEEEE---B-SSSGTTS...HHHHHHHSTTEEEEEEEETTS-CCC-CHHHHHHHHSTTBTT CS
   Dynamin_N  97 sllvkgltlvDlPGldsvnkrdq...elvkeyikkadiilavtsanhdlsnsealflarevdpkgkr 160
                 + ++ ++ l+DlPG+++ + + +   + v   +k++d+il+v++a +  ++ +++ l++e+d+ g r
  KOO23401.1 107 DYKNTRIQLLDLPGIIEGASEGKgrgRQVIGVAKSCDLILLVVDAGSGKADRQRQLLEHELDVVGIR 173
                 5677899**********9999998999999999***************************9987765 PP

>> GTP_EFTU  Elongation factor Tu GTP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.0   0.00015      0.38      59     116 ..      90     164 ..      77     173 .. 0.73
   2 ?    1.2   0.0     0.087   2.2e+02     123     150 ..     243     271 ..     234     361 .. 0.75

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.00015
                 EEEEEE..........TTCSSEEEEEEEESSSGGGHHH.......HHHHHHT-SEEEEEEETTTBSTHHHHHHHH CS
    GTP_EFTU  59 aaisle..........ketkkylinliDtPGHvdFske.......virglrvlDgavlvvdaveGvepqteevlr 116
                 +a+s+e           ++k+++i+l+D PG ++  +e       vi  ++ +D+ +lvvda +G   + +++l+
  KOO23401.1  90 EAASYEfttltcipgiIDYKNTRIQLLDLPGIIEGASEgkgrgrqVIGVAKSCDLILLVVDAGSGKADRQRQLLE 164
                 444444566666666448999999999999998876653333322777799**************8877777665 PP

  == domain 2  score: 1.2 bits;  conditional E-value: 0.087
                 TEEEEEEESCGST.HHHHHHHHHHHHHHH CS
    GTP_EFTU 123 vpiivfiNKmDrl.kaelkeiveevkqkl 150
                 v+   + NK+D++ ++e++++ ++ ++ +
  KOO23401.1 243 VRCLYVYNKIDMTsIEECERVCSMPHTMV 271
                 6677899*****98888888877666544 PP

>> MeaB  Methylmalonyl Co-A mutase-associated GTPase MeaB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3   0.0    0.0002       0.5      28      52 ..      64      87 ..      59      94 .. 0.82
   2 ?   -2.9   0.0         1   2.7e+03     131     155 ..     130     154 ..     114     159 .. 0.80
   3 ?   -0.6   0.0       0.2   5.2e+02     171     219 ..     246     304 ..     237     324 .. 0.74

  Alignments for each domain:
  == domain 1  score: 9.3 bits;  conditional E-value: 0.0002
                -SEEEEEEE-TTSSHHHHHHHHHHH CS
        MeaB 28 raqvvGltGvPGaGkstlvealgle 52
                 a +v l G+P +Gkst+++ ++++
  KOO23401.1 64 DA-RVALIGFPSVGKSTILSTFTAT 87
                44.789**************99875 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 1
                 SSTTHHHHHHTT-SEEEEEEESSTT CS
        MeaB 131 GvGqsevdvaevvdtfvvlllpeaG 155
                 G G+  + va+ +d++++++ +++G
  KOO23401.1 130 GRGRQVIGVAKSCDLILLVVDAGSG 154
                 6777778899999999988877777 PP

  == domain 3  score: -0.6 bits;  conditional E-value: 0.2
                 EEEEE---HHHHHHHHHHHHHHHHHCST..........TBTTB--EEEEEBCCCTBSHH CS
        MeaB 171 iivvnkaDkkeaekaarelraaleleee..........kekeWrpkvlktsavegeGid 219
                 ++v nk D + +e+ +r  ++  ++  +          kek W+   l+ + ++++G++
  KOO23401.1 246 LYVYNKIDMTSIEECERVCSMPHTMVLScqmglnheafKEKLWEYLGLTRVYTKKQGVK 304
                 78999999877777777655444333333345555555688898888888888888887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (406 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       898  (0.0500865); expected 358.6 (0.02)
Passed bias filter:                      557  (0.031067); expected 358.6 (0.02)
Passed Vit filter:                        49  (0.002733); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.48u 0.26s 00:00:00.74 Elapsed: 00:00:00.39
# Mc/sec: 3101.07
//
Query:       KOO23402.1  [L=408]
Description: hypothetical protein Ctob_004278 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
        9.2    7.0   7.3        6.3    7.5   0.1    3.5  3  ThiS      ThiS family


Domain annotation for each model (and alignments):
>> ThiS  ThiS family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.3   0.1     0.064   1.1e+03      12      35 ..      54      78 ..      47      99 .. 0.75
   2 ?    0.4   0.4      0.06   1.1e+03      10      55 ..     176     221 ..     168     233 .. 0.71
   3 ?    7.5   0.1   0.00035       6.3       8      62 ..     298     347 ..     289     351 .. 0.66

  Alignments for each domain:
  == domain 1  score: 0.3 bits;  conditional E-value: 0.064
                T.CEEEEESSTSBHHHHHHHHHHHT CS
        ThiS 12 g.eeelelaegstvaelleaLgery 35
                + e e+ ++eg t++e  ++L  ++
  KOO23402.1 54 NaEAETGDEEGVTLSEFNRWLIHED 78
                246777799999**99999998776 PP

  == domain 2  score: 0.4 bits;  conditional E-value: 0.06
                 HHTCEEEEESSTSBHHHHHHHHHHHTCHHG.TTTTEEEEETTEEEGC CS
        ThiS  10 lageeelelaegstvaelleaLgerypela.lerrvavavNgeivpr 55 
                 +  e   +l+ +++++e+++a +++ +e+a + r   + +N+  v++
  KOO23402.1 176 KE-EMDALLSMKKKLGEVVKAEDAKISEAAkSQREEFLKINKAQVEK 221
                 33.57778888999999999999998888875566666667666666 PP

  == domain 3  score: 7.5 bits;  conditional E-value: 0.00035
                 HHHHTCEEEEESSTSBHHHHHHHHHHHTCHHGTTTTEEEEETTEEEGCCTTTSB- CS
        ThiS   8 relageeelelaegstvaelleaLgerypelalerrvavavNgeivprlwldtel 62 
                 re+a+ ++l  +++++ +++ e+ ++       ++ v +avN+++v+++     l
  KOO23402.1 298 REAAEMRKLKAEQAQSFRAAQEEHAATT-----KQTVYAAVNQKFVQPQSSRRML 347
                 4555544455555555555555555444.....6*************96666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (408 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      3260  (0.181828); expected 358.6 (0.02)
Passed bias filter:                      447  (0.0249317); expected 358.6 (0.02)
Passed Vit filter:                        65  (0.00362541); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.70u 0.29s 00:00:00.99 Elapsed: 00:00:00.43
# Mc/sec: 2836.97
//
Query:       KOO23403.1  [L=434]
Description: DNA damage tolerance protein rad31 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.8e-27   95.7   0.0    4.3e-27   95.0   0.0    1.2  1  ThiF          ThiF family
  ------ inclusion threshold ------
       0.28   11.2   0.6       0.75    9.9   0.2    1.9  2  Shikimate_DH  Shikimate / quinate 5-dehydrogenase


Domain annotation for each model (and alignments):
>> ThiF  ThiF family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   95.0   0.0   4.8e-31   4.3e-27       2     228 ..      18     404 ..      16     418 .. 0.89

  Alignments for each domain:
  == domain 1  score: 95.0 bits;  conditional E-value: 4.8e-31
                 HHHHHHHHHHHHHHHHTSEEEEE--SHHHHHHHHHHHHHTTTEEEEEESSB--GGGGGTBTTS-..GGGTTSBHHHHHHHHHHHT-TTSEEEEEES-CC CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        ThiF   2 srqlallgedgqekLrdskvllvGaGglGsellknLalsGvgkltlvDnDkielsNlnRqflfr..eediGkpKaevaaealqeinpdveveavterit 98 
                 +r ++l+g + q+ L+ ++vl++Ga gl +e++knL+lsG+g+l + D ++ + ++l    lf+  +e  G ++a+ +ae+l+e+np+v+ve  ++++t
  KOO23403.1  18 DRSIRLWGAATQRGLQGAQVLVLGANGLSNEVCKNLVLSGIGRLVIQDAGVLSAEDLKKSALFSvpPERAGASRAQLLAEHLKEMNPSVNVEGKQANVT 116
                 688999999**************************************************999975589******************************9 PP

                 G.CCS-HHHHTT-SEEEEESSSHHHHHHHHHHHHHHT......................................................-E.EEEEE CS
                 x.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx......................................................xx.xxxxx RF
        ThiF  99 d.etvleellesvDlVvdalDniearrlvnracvkkg......................................................ip.lieag 141
                 + +     +l+++ +++ ++  +e+ r   ++c                                                          +p ++ a+
  KOO23403.1 117 SfD---AAFLRTFHFIIATSRGVESIREA-DVCTAVLegrggadettgeppdepqakrhcangdsgppvarsngahvvvplrklcepgaspMPrILAAA 211
                 966...49****************99987.55554444589************************************************996647889* PP

                 EETTEEEEEEEEECCS-ECTSS-T.....GGS.EECCCCEEHHH....................................................... CS
                 xxxxxxxxxxxxxxxxxxxxxxxx.....xxxxxxxxxxxxxxx....................................................... RF
        ThiF 142 tlgfegqvvviipgktgcyeCldp.....sstedptekkvplct....................................................... 180
                 t g+eg++++ + g+    +C+       ++ + p+ ++ p+                                                         
  KOO23403.1 212 TIGLEGFCFFDL-GE---ARCMLSpkkaaAEAQAPPADEMPVGVwerayyptiksacsvewpslttrvprlyyavqllrhaassltagsrspvpspvps 306
                 **********97.44...555542233544444555555554448999999999999999*************************************** PP

                 ..................................................HHHCT.E-B-HHHHHHHHHHHHHHHHHHHTTBCGGGCCEEEECCTTTTE CS
                 ..................................................xxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        ThiF 181 ..................................................siagn.ipaiatttavvaglaalellkllsgkeklenslltqvdllesr 228
                                                                   ++a n    +a+++avv+g++a e++k++s+ke   n+++ ++d+ +  
  KOO23403.1 307 sladatsllpagssdatverlqtmltrraellhgegkgeaaklltpsylaEVAQNvGYELAPVCAVVGGMVASEVIKIISNKERPVNNTF-FFDGTSAD 404
                 ***********************************************999666666689********************99999999999.89987765 PP

>> Shikimate_DH  Shikimate / quinate 5-dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   0.2   8.3e-05      0.75       9      54 ..      31      76 ..      25     103 .. 0.86
   2 ?   -3.7   0.0       1.3   1.2e+04      19      34 ..     373     388 ..     364     390 .. 0.76

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 8.3e-05
                  ..TT-EEEEES-SHHHHHHHHHHHCCT-CEEEEEESSHHHHHHHHH CS
  Shikimate_DH  9 slkekkvlliGaGemaelvakhLlakgvkkvvvaNRtlerakelae 54
                   l++++vl++Ga  ++++v+k+L+ +g+ ++v+    +  a++l +
    KOO23403.1 31 GLQGAQVLVLGANGLSNEVCKNLVLSGIGRLVIQDAGVLSAEDLKK 76
                  5899****************************98877777777765 PP

  == domain 2  score: -3.7 bits;  conditional E-value: 1.3
                   S-SHHHHHHHHHHHCC CS
  Shikimate_DH  19 GaGemaelvakhLlak 34 
                     G++a++v+k +++k
    KOO23403.1 373 VGGMVASEVIKIISNK 388
                   3499999999998887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (434 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       235  (0.0131073); expected 358.6 (0.02)
Passed bias filter:                      210  (0.0117129); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.47u 0.20s 00:00:00.67 Elapsed: 00:00:00.38
# Mc/sec: 3411.77
//
Query:       KOO23404.1  [L=196]
Description: hypothetical protein Ctob_004280 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.3e-10   41.3   0.0    3.9e-10   40.6   0.0    1.4  1  CS        CS domain


Domain annotation for each model (and alignments):
>> CS  CS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.6   0.0   2.2e-14   3.9e-10       2      76 .]      55     133 ..      54     133 .. 0.83

  Alignments for each domain:
  == domain 1  score: 40.6 bits;  conditional E-value: 2.2e-14
                 SCEEEEETTEEEEEEE-TTCTTTTTCEEEEEETTEEEEEE....TS.CEEEEECEBSS-BETTTEEEEEET..TEEEEEEEB CS
          CS   2 kydWyQtldeVvvtiyvkkvnikkkdvkvefkerslkvki....gk.eklliegeLfgpIdpeesswties..kkveitLkK 76 
                 +y+W+ +++ + ++++v++v  +++ v v ++e+s+kv+     ++  ++ ++  L++++d+++s++++++   +v i L K
  KOO23404.1  55 NYSWSDDTNYIRIYVPVPGV--SSEGVAVYIEEDSIKVHAmtpeHGqFTMALNR-LYDKVDVSQSTYKVQGrkERVIIALAK 133
                 79*****************9..*****************976642224444333.***************634778888877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (196 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       429  (0.0239277); expected 358.6 (0.02)
Passed bias filter:                      352  (0.019633); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.24s 00:00:00.64 Elapsed: 00:00:00.39
# Mc/sec: 1490.49
//
Query:       KOO23405.1  [L=238]
Description: hypothetical protein Ctob_005207 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.068   13.8   0.1       0.13   12.9   0.1    1.7  1  SnoaL_2   SnoaL-like domain


Domain annotation for each model (and alignments):
>> SnoaL_2  SnoaL-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.1   7.4e-06      0.13      12      42 ..      64      96 ..      54     184 .. 0.71

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 7.4e-06
                CHHHHHHTEEEEEEEEETTSE..EESHHHHHHH CS
     SnoaL_2 12 dldalaalfapdvvwedpgge..lrGreairaf 42
                 +d+l+al+apd++++dp+++  l+ + a+r++
  KOO23405.1 64 GWDKLEALLAPDATQRDPTQArkLSSILAARDW 96
                59****************655457777677773 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (238 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       384  (0.0214178); expected 358.6 (0.02)
Passed bias filter:                      324  (0.0180713); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.24s 00:00:00.65 Elapsed: 00:00:00.39
# Mc/sec: 1817.24
//
Query:       KOO23406.1  [L=212]
Description: splicing factor 3b subunit 4-like protein, partial [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.9e-38  128.5   0.0    1.3e-19   69.8   0.0    2.2  2  RRM_1     RNA recognition motif. (a.k.a. RRM, RBD, or RNP dom
    0.00051   20.1   0.0     0.0039   17.3   0.0    2.1  2  RRM_7     RNA recognition motif
     0.0038   16.8   0.0       0.18   11.4   0.0    2.1  2  RRM_5     RNA recognition motif. (a.k.a. RRM, RBD, or RNP dom
  ------ inclusion threshold ------
      0.011   15.4   1.5        0.4   10.4   0.3    2.5  2  OB_RNB    Ribonuclease B OB domain


Domain annotation for each model (and alignments):
>> RRM_1  RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.9   0.0     3e-19   1.3e-15       2      70 .]      15      84 ..      14      84 .. 0.98
   2 !   69.8   0.0   2.8e-23   1.3e-19       1      69 [.     101     171 ..     101     172 .. 0.97

  Alignments for each domain:
  == domain 1  score: 56.9 bits;  conditional E-value: 3e-19
                EEESETTTSSHHHHHHHHHTTSCEEEEEEEEE.TTTSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE CS
       RRM_1  2 fVgnLppdvteeeLkelFskfGpiksiklvrd.etgkskgfafVeFeskedAekAlealngkklggrelk 70
                +Vg+L + v+e  L el  + Gp++s+ +++d  t++++gf+fVeF+   dAe A++ ln  kl g++++
  KOO23406.1 15 YVGDLDTKVSEALLWELCLQAGPVVSVHIPKDkLTQQHMGFGFVEFKADVDAEYAIKVLNMIKLFGKPIR 84
                9*****************************************************************9986 PP

  == domain 2  score: 69.8 bits;  conditional E-value: 2.8e-23
                 EEEESETTTSSHHHHHHHHHTTSCE.EEEEEEEE.TTTSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEE CS
       RRM_1   1 lfVgnLppdvteeeLkelFskfGpi.ksiklvrd.etgkskgfafVeFeskedAekAlealngkklggrel 69 
                 +fVgnL p+v+e+ L++ Fs fG i ++ k++rd  tg s+gf+fV Fe+ e+ + A+ea+ng+ l ++++
  KOO23406.1 101 IFVGNLDPEVDEKLLYDTFSAFGLIvTTPKIMRDpDTGASRGFGFVSFETFEASDTAIEAMNGQFLCNQPI 171
                 8************************8899*************************************99987 PP

>> RRM_7  RNA recognition motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.5   0.0      0.15   6.7e+02       5      40 ..      15      51 ..      12      74 .. 0.70
   2 !   17.3   0.0   8.7e-07    0.0039       3      62 ..     100     153 ..      98     180 .. 0.82

  Alignments for each domain:
  == domain 1  score: 0.5 bits;  conditional E-value: 0.15
       RRM_7  5 FvGGlPiDiteeelkatfkefgkv.lvdwPkkaeskk 40
                +vG l + ++e+ l++   + g+v +v  Pk + +++
  KOO23406.1 15 YVGDLDTKVSEALLWELCLQAGPVvSVHIPKDKLTQQ 51
                7888888899999988888877752577777644333 PP

  == domain 2  score: 17.3 bits;  conditional E-value: 8.7e-07
       RRM_7   3 kvFvGGlPiDiteeelkatfkefgkvlvdwPkkaeskkkaaenskaakgyvflvfedeks 62 
                  +FvG l ++++e+ l++tf++fg  +v  Pk  + + + a      +g+ f+ fe+ ++
  KOO23406.1 100 NIFVGNLDPEVDEKLLYDTFSAFGL-IVTTPKIMRDPDTGA-----SRGFGFVSFETFEA 153
                 69**********************6.678899999988764.....46888888876555 PP

>> RRM_5  RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.4   0.0   4.1e-05      0.18      58     104 ..      47      94 ..      21     109 .. 0.78
   2 !    3.8   0.0    0.0093        42      31      99 ..     103     176 ..      94     186 .. 0.66

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 4.1e-05
       RRM_5  58 kflktkketalvqmgdasaveravqHLnnaklfgkrleval.SKqqav 104
                 k+ ++  +  +v+    +++e a++ Ln +klfgk+++v    K++  
  KOO23406.1  47 KLTQQHMGFGFVEFKADVDAEYAIKVLNMIKLFGKPIRVNAaAKERDT 94 
                 55566677889999999******************9999651455444 PP

  == domain 2  score: 3.8 bits;  conditional E-value: 0.0093
       RRM_5  31 VyglepdkvnldklFnlfclYgnv.ervkflkt.....kketalvqmgdasaveravqHLnnaklfgkrlevalS 99 
                 V +l+p+ v  + l+  f+ +g +    k+++       ++  +v      a ++a++ +n++ l ++++ v+  
  KOO23406.1 103 VGNLDPE-VDEKLLYDTFSAFGLIvTTPKIMRDpdtgaSRGFGFVSFETFEASDTAIEAMNGQFLCNQPISVTYA 176
                 5555553.4555666666666653144466664111113455678888888999**************9999865 PP

>> OB_RNB  Ribonuclease B OB domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.9   0.1    0.0097        43       6      24 ..      51      70 ..      47      79 .. 0.67
   2 ?   10.4   0.3   8.9e-05       0.4       5      26 ..     138     160 ..     137     190 .. 0.88

  Alignments for each domain:
  == domain 1  score: 3.9 bits;  conditional E-value: 0.0097
                -SSS-EEEEECT..TEEEEE CS
      OB_RNB  6 hkkGFGFlipde.gkeDifi 24
                   GFGF++     + ++ i
  KOO23406.1 51 QHMGFGFVEFKAdVDAEYAI 70
                567*****976644555555 PP

  == domain 2  score: 10.4 bits;  conditional E-value: 8.9e-05
                 E-SSS-EEEEECT..TEEEEE-H CS
      OB_RNB   5 ahkkGFGFlipde.gkeDifipp 26 
                 + ++GFGF++ ++ + +D  i +
  KOO23406.1 138 GASRGFGFVSFETfEASDTAIEA 160
                 5689*********9999999865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (212 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       373  (0.0208043); expected 358.6 (0.02)
Passed bias filter:                      363  (0.0202465); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.38u 0.24s 00:00:00.62 Elapsed: 00:00:00.37
# Mc/sec: 1710.36
//
Query:       KOO23407.1  [L=735]
Description: hypothetical protein Ctob_005208 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (735 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1941  (0.10826); expected 358.6 (0.02)
Passed bias filter:                      372  (0.0207485); expected 358.6 (0.02)
Passed Vit filter:                        53  (0.0029561); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.88u 0.30s 00:00:01.18 Elapsed: 00:00:00.47
# Mc/sec: 4698.88
//
Query:       KOO23408.1  [L=331]
Description: NAD-dependent epimerase dehydratase family protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    9.1e-15   54.8   0.0    1.2e-14   54.4   0.0    1.1  1  Epimerase       NAD dependent epimerase/dehydratase family
    4.9e-08   33.1   0.1    1.4e-07   31.6   0.1    1.8  1  NAD_binding_10  NAD(P)H-binding
      3e-06   26.6   0.0    4.1e-06   26.1   0.0    1.3  1  RmlD_sub_bind   RmlD substrate binding domain
  ------ inclusion threshold ------
        0.2   11.2   0.0       0.67    9.6   0.0    1.8  2  DUF957          Enterobacterial protein of unknown function (


Domain annotation for each model (and alignments):
>> Epimerase  NAD dependent epimerase/dehydratase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.4   0.0   2.6e-18   1.2e-14      44     228 ..      18     191 ..       5     201 .. 0.84

  Alignments for each domain:
  == domain 1  score: 54.4 bits;  conditional E-value: 2.6e-18
                 EEEE--TT-HHHHHHHHHHHT-SEEEE--S---HHHHHHSHHHHHHHHTHHHHHHHHHHHHH.TCTEEEEEEEGGGGTSCSSSSBSTCSTTS----SSH CS
   Epimerase  44 elveldltdrsalerlfkeeqpdavihlAavggvaassedpadfieknlqgtlnlleaarka.gvkrllflsSsevYGkdaeqpkeettltgplkpnsp 141
                 e  ++d+  +s ++++f+  ++d+v++l      + +  +  d++++ ++ + +l+ +a ++ gvkr++ ls+++vY  +++   +e++    lkp + 
  KOO23408.1  18 EHRQADISRQSGVDKAFEGGGFDVVFNL---TYDSITYGHEGDVYKQRIVDVATLCGMAAERqGVKRFVDLSTAQVYDSSEKA-STESA---TLKPWTK 109
                 55699***********************...666666777889*************9887555***************99884.44444...79999** PP

                 HHHHHHHHHHHHHHHHHHHT-EEEEEEESEEESTTS-TTSTTSHHHHHHHHHHTTSSSEEEETTST-EEEEEEHHHHHHHHHHHHHH CS
   Epimerase 142 YaaaKlageklveayaaqyglnaiilrlfnlyGprngegevsrvipalirkilegkqevtllgdgtalRdflyveDvaeaillvleh 228
                  a+ Kl +e++++++    gl+ ++lr  ++yGp++ +g   r++ a++ k l +k    +  d + +   ++v+Dva a+++v   
  KOO23408.1 110 QALLKLRAESILREI---PGLPLVVLRTASMYGPGDVNGLSPRILCAAVYKYLGEK--MRFAWDRKLKTNTVHVRDVAAACWHVCLL 191
                 ************987...89***************999999999999999987655..55555799999*************99766 PP

>> NAD_binding_10  NAD(P)H-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.6   0.1   3.2e-11   1.4e-07      35     146 ..      12     137 ..       4     190 .. 0.76

  Alignments for each domain:
  == domain 1  score: 31.6 bits;  conditional E-value: 3.2e-11
                     HHCTTTCEEEE--TT-CCHHHHHHT..T-SEEEES-......--TCC..HHHH...HHHHHHHHHHCT--EEEEEEETTTTSGCGCHHHHHHH.H CS
  NAD_binding_10  35 leaeeglevvegdvtdvedlaealk..gadaVvsal......ggggk..deeg...aknivdaakeagvkRfvlvsaigvgdevpgefgewnk.e 115
                     +  ++++e  ++d++ ++ + +a++  g d+V+  +      g++g+  ++++   a  +  aa+++gvkRfv +s+++v+d+++++  e ++ +
      KOO23408.1  12 F-TAPAVEHRQADISRQSGVDKAFEggGFDVVFNLTydsityGHEGDvyKQRIvdvATLCGMAAERQGVKRFVDLSTAQVYDSSEKASTESATlK 105
                     4.46999*****************966678888888888776554445433336646666679******************97666544432214 PP

                     CCHHHHHHHHHHHHHHHH.SSSEEEEEEE-CE CS
  NAD_binding_10 116 llkaylaakraaeellra.sgldwTivrpggL 146
                      + + +  k +ae +lr+  gl  +++r + +
      KOO23408.1 106 PWTKQALLKLRAESILREiPGLPLVVLRTASM 137
                     4455556699********78**9999998875 PP

>> RmlD_sub_bind  RmlD substrate binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.1   0.0   9.2e-10   4.1e-06      26     158 ..      13     144 ..       2     218 .. 0.86

  Alignments for each domain:
  == domain 1  score: 26.1 bits;  conditional E-value: 9.2e-10
                    EEEEE-TTT--TTSHHHHHHHHHHH--SEEEE------HHHHHHSHHHHHHHHTHHHHHHHHHHHHCT-EEEEEEEGGGS-S-TTS-B-TTS---- CS
  RmlD_sub_bind  26 evlaltreeldltdaeavaellkeakpdvvvnaAAytavDkaEseeeaayavnaeavealAeaaaavgalLihvStDyVFdGekkrpYeeddetsP 121
                     + a++ +++d+++++ v+++++    dvv n+         E +  ++  v++     +A++ + v+  ++ +St  V+d ++ ++ +e+++ +P
     KOO23408.1  13 TAPAVEHRQADISRQSGVDKAFEGGGFDVVFNLTYDSITYGHEGDVYKQRIVDVATLCGMAAERQGVK-RFVDLSTAQVYDSSE-KASTESATLKP 106
                    55678899*************************99999999************999999987666554.69**********995.5589******* PP

                    SSHHHHHHHHHHHHHHH.H-SSEEEEEE-SEESSSSS- CS
  RmlD_sub_bind 122 lnvYGrtKlaGEqavla.agkkalivRtswvygekgkn 158
                     +  +  Kl+ E   ++  g   +++Rt+ +yg  + n
     KOO23408.1 107 WTKQALLKLRAESILREiPGLPLVVLRTASMYGPGDVN 144
                    ****************9667899*********986655 PP

>> DUF957  Enterobacterial protein of unknown function (DUF957)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.0      0.85   3.8e+03      39      50 ..      14      25 ..      11      26 .. 0.83
   2 ?    9.6   0.0   0.00015      0.67      19      50 ..      84     116 ..      82     120 .. 0.82

  Alignments for each domain:
  == domain 1  score: -2.5 bits;  conditional E-value: 0.85
      DUF957 39 lPavEkaravvr 50
                 PavE+ +a+++
  KOO23408.1 14 APAVEHRQADIS 25
                59***9999986 PP

  == domain 2  score: 9.6 bits;  conditional E-value: 0.00015
      DUF957  19 dceseiiFDNDed.nTdSavLlPavEkaravvr 50 
                 d+ +  ++D  e+  T+Sa L P+  +a+  +r
  KOO23408.1  84 DLSTAQVYDSSEKaSTESATLKPWTKQALLKLR 116
                 6667778998887369************98776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (331 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       489  (0.0272742); expected 358.6 (0.02)
Passed bias filter:                      457  (0.0254894); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.47u 0.21s 00:00:00.68 Elapsed: 00:00:00.38
# Mc/sec: 2640.21
//
Query:       KOO23409.1  [L=337]
Description: conserved unknown protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (337 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       350  (0.0195214); expected 358.6 (0.02)
Passed bias filter:                      315  (0.0175693); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.42u 0.25s 00:00:00.67 Elapsed: 00:00:00.39
# Mc/sec: 2622.91
//
Query:       KOO23410.1  [L=370]
Description: hypothetical protein Ctob_005197 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    6.8e-06   25.8   0.0    4.7e-05   23.1   0.0    2.2  1  Sec23_trunk  Sec23/Sec24 trunk domain


Domain annotation for each model (and alignments):
>> Sec23_trunk  Sec23/Sec24 trunk domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.1   0.0   2.6e-09   4.7e-05       5     124 ..       7     143 ..       4     201 .. 0.79

  Alignments for each domain:
  == domain 1  score: 23.1 bits;  conditional E-value: 2.6e-09
                  EEEEEEE-SHHHHHHTHHHHHHHHHHHHCTTSSTSTT-EEEEEEESSSEEEEETSTTSSSSEEEEE..CHTTSCC................SSTSSSS CS
  Sec23_trunk   5 vflFviDvsleaikegelkalkeslkqsLdllPeepralvglitfdsvvhffelkselrqpkelvv..sdlqdvf................lpladrl 84 
                  v +F++D + +   eg l+ l  + +++L llP  p+alvgl++f+++v ++ l + ++ + e +v  s ++  +                 ++a   
   KOO23410.1   7 VVFFLVDETCD---EGALRDLLVAARDALPLLP--PDALVGLLSFGRAVSVYLLAQPASAADESSVesSPIEA-LtlpasdaplpwelealNARAAHA 98 
                  5589***9999...*******************..*******************9998555444441044444.447888888888888877888889 PP

                  SEETTTTHHHHHHHHHHHHH.H....STT-TTC-----HHHHHHH CS
  Sec23_trunk  85 LvplseseavledlLeelpe.m....favtagkrperalgpalka 124
                  L p +++ + l ++Le l++ +    fa    + ++ ++ +a++ 
   KOO23410.1  99 LAPRHACYTRLLRALEALQPpPppptFARRPAHGSSASTTSAVSS 143
                  999999999999999999753222225555555555555566555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (370 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       416  (0.0232026); expected 358.6 (0.02)
Passed bias filter:                      259  (0.0144459); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.23s 00:00:00.66 Elapsed: 00:00:00.37
# Mc/sec: 2960.98
//
Query:       KOO23411.1  [L=254]
Description: hypothetical protein Ctob_005199 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (254 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       617  (0.0344135); expected 358.6 (0.02)
Passed bias filter:                      304  (0.0169558); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.43u 0.24s 00:00:00.67 Elapsed: 00:00:00.40
# Mc/sec: 1900.58
//
Query:       KOO23412.1  [L=303]
Description: glycerol-3-phosphate dehydrogenase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
      3e-48  163.7   0.2      5e-48  163.0   0.2    1.4  1  NAD_Gly3P_dh_C  NAD-dependent glycerol-3-phosphate dehydrogen
    4.7e-35  120.9   0.0    1.4e-34  119.4   0.0    1.7  2  NAD_Gly3P_dh_N  NAD-dependent glycerol-3-phosphate dehydrogen


Domain annotation for each model (and alignments):
>> NAD_Gly3P_dh_C  NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  163.0   0.2   5.6e-52     5e-48       1     141 [.     156     301 ..     156     302 .. 0.94

  Alignments for each domain:
  == domain 1  score: 163.0 bits;  conditional E-value: 5.6e-52
                     -HHHHHHHHHHHHHHHHHHHHHHHTTH-HHHHHHHHHHHHHHHHHHHHHHTSS..GGGGGSTTTHHHHHHHHHSCT.HHHHHHHHHHC.T--HHH CS
  NAD_Gly3P_dh_C   1 DviGvelagalKNviAiaaGivdglglgdntkaalitrglaEmarlakalgak..petflglaglgDlivtctsgksRNrrfGeelgk.geslee 92 
                     Dv+Gvel+galKNv+Ai+aG +dglg+g ntkaa+i++gl+E ++++k++     ++tf++++gl+Dl++tc++g  RNr+++e+++k + +++e
      KOO23412.1 156 DVAGVELCGALKNVVAIGAGYCDGLGYGGNTKAAIIRIGLKETIKFCKMFFSGvrDDTFFESCGLADLVTTCFGG--RNRKCAEAFAKgEGTWDE 248
                     9************************************************85534499******************..***********65599** PP

                     HHH.HHC.C--HHHHHHHHHHHHHHHTT...G.HHHHHHHHHHHS---HHHHH CS
  NAD_Gly3P_dh_C  93 iek.eln.qvleGvetakevyellkkkgv..emplleavykilyegkspeeli 141
                     iek  ln q+l+G+  ak v+ +lk k++  e+pl++ +y+i yegk p++++
      KOO23412.1 249 IEKkLLNgQKLQGTLCAKDVMVVLKTKKLekEFPLFTRIYEIAYEGKAPSTIV 301
                     **988889******************99999******************9987 PP

>> NAD_Gly3P_dh_N  NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  119.4   0.0   1.5e-38   1.4e-34      27     155 ..       1     135 [.       1     137 [. 0.96
   2 ?   -1.5   0.0      0.24   2.2e+03      32      60 ..     243     271 ..     230     281 .. 0.70

  Alignments for each domain:
  == domain 1  score: 119.4 bits;  conditional E-value: 1.5e-38
                     EE-S-H.....HHHHHHHHHSSBTTTBTT----TTEEEES-HHHHHTT--EEEE---HHHHHHHHHHHCCC--TT-EEEE---SE..ET.TTEEH CS
  NAD_Gly3P_dh_N  27 lwvree.....elieeineehenvkyLpgiklpenlvattdlaealkgadiivlvvPsqalrevlkklkgllkkkailvsliKGi..eegtlkll 114
                     +wv++e     +l++ in++henvkyLpgik+  n+ a +dl++a++g++++++v+P+q+l +++ k+++ ++k  +++sliKGi  ++ +  l+
      KOO23412.1   1 MWVFQEqvngkNLTDIINTQHENVKYLPGIKFTPNVIADPDLTHACTGSTLLIFVLPHQFLGRICPKMDT-VAKGCRAISLIKGIefNDRGPILI 94 
                     799999999999********************************************************98.679***********87788999** PP

                     HHHHHHHH-S--EEEEESS--HHHHHTT--EEEEEEES-HH CS
  NAD_Gly3P_dh_N 115 sevieeelkeekvavlsGpslAeEvakgkptavviaskdke 155
                     s++i+e ++   v+vl+G+++A+Evak+++++ ++++++++
      KOO23412.1  95 SNMIKEAMGGMDVSVLMGANVANEVAKDDFCESTVGYSNSA 135
                     ************************************99875 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 0.24
                     HHHHHHHHHHSSBTTTBTT----TTEEEE CS
  NAD_Gly3P_dh_N  32 eelieeineehenvkyLpgiklpenlvat 60 
                     e + +ei+++  n + L+g+ + +++ ++
      KOO23412.1 243 EGTWDEIEKKLLNGQKLQGTLCAKDVMVV 271
                     55667777777777777777777777655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (303 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       341  (0.0190195); expected 358.6 (0.02)
Passed bias filter:                      313  (0.0174578); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.43u 0.26s 00:00:00.69 Elapsed: 00:00:00.41
# Mc/sec: 2211.78
//
Query:       KOO23413.1  [L=419]
Description: hypothetical protein Ctob_005202 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.031   13.5   0.4      0.031   13.5   0.4    2.0  2  SARG        Specifically androgen-regulated gene protein
      0.034   13.8   4.1      0.028   14.1   2.4    1.6  2  FAM176      FAM176 family
      0.063   12.1   1.0      0.088   11.6   1.0    1.2  1  Nucleo_P87  Nucleopolyhedrovirus capsid protein P87


Domain annotation for each model (and alignments):
>> SARG  Specifically androgen-regulated gene protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.4   5.1e-06     0.031     309     372 ..     105     170 ..      94     229 .. 0.70
   2 ?   -2.8   4.0      0.44   2.6e+03     355     414 ..     280     339 ..     251     366 .. 0.66

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 5.1e-06
        SARG 309 vssslqeqrkarrEALeKLGLpkdqeepslql..skpksslklreskqapasapapvspaapaeas 372
                  s+  ++ r+ +rE   KL + +d++e+++    +++     +r+++   a+ papv + + a+++
  KOO23413.1 105 SSNGPKDRRQMKREHAHKLAMIQDEDEDEDDQeqQQQPEHKEVRRHWSGVARGPAPVPAGVSASEA 170
                 56667999****************966554440034444556788886666677776665555443 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 0.44
        SARG 355 apasapapvspaapaeaspapal.aqgsspgkalvpaqettpgkvpaaksapipipkaarv 414
                 ap ++ a++  aap ++ +ap l a+ +  + a  +  et  g +p + s+++++ +++++
  KOO23413.1 280 APHAPVAAMALAAPSRH-AAPLLaAELNEVEAAAATEAETGTGPMPGEASTQVDLSAPSAT 339
                 33333333333333332.3344404444555566677788888999999999998776654 PP

>> FAM176  FAM176 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.0      0.59   3.5e+03      70      85 ..      57      65 ..      30      99 .. 0.49
   2 ?   14.1   2.4   4.6e-06     0.028      53     116 ..     112     176 ..      95     183 .. 0.71

  Alignments for each domain:
  == domain 1  score: -2.5 bits;  conditional E-value: 0.59
      FAM176 70 ededeeeeeeeedsse 85
                +  d+++e       +
  KOO23413.1 57 DAVDSDSE-------T 65
                11111111.......1 PP

  == domain 2  score: 14.1 bits;  conditional E-value: 4.6e-06
      FAM176  53 rlkkkkkklkeesekasededeeeeeeeedsseseaeeelsefertl.svnvftsaeelerAqRl 116
                 r++ k+++ ++ +  ++edede+++e++++ +++e+++++s + r   +v +  sa e+e  +Rl
  KOO23413.1 112 RRQMKREHAHKLAMIQDEDEDEDDQEQQQQPEHKEVRRHWSGVARGPaPVPAGVSASEAEAERRL 176
                 22333333333333448899999999999999999999999988765588888899988888887 PP

>> Nucleo_P87  Nucleopolyhedrovirus capsid protein P87
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   1.0   1.5e-05     0.088     392     437 ..     105     150 ..       7     152 .. 0.70

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 1.5e-05
  Nucleo_P87 392 easavlptekrkRrrarklqelssdededssdekevDkekerkRRr 437
                 +++ +   +++kR +a+kl  +++++++++++e+++  e++  RR+
  KOO23413.1 105 SSNGPKDRRQMKREHAHKLAMIQDEDEDEDDQEQQQQPEHKEVRRH 150
                 23333456899********999888888888888888888888885 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (419 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1043  (0.0581739); expected 358.6 (0.02)
Passed bias filter:                      618  (0.0344693); expected 358.6 (0.02)
Passed Vit filter:                        47  (0.00262145); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.55u 0.31s 00:00:00.86 Elapsed: 00:00:00.44
# Mc/sec: 2884.13
//
Query:       KOO23414.1  [L=159]
Description: hypothetical protein Ctob_005201 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (159 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       562  (0.0313459); expected 358.6 (0.02)
Passed bias filter:                      387  (0.0215851); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.24s 00:00:00.60 Elapsed: 00:00:00.37
# Mc/sec: 1280.32
//
Query:       KOO23415.1  [L=377]
Description: phospholipid scramblase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.1e-13   51.0   0.0    1.7e-07   30.8   0.0    2.3  2  Scramblase     Scramblase
  ------ inclusion threshold ------
       0.16   11.4   0.0       0.27   10.7   0.0    1.3  1  Peptidase_C74  Pestivirus NS2 peptidase


Domain annotation for each model (and alignments):
>> Scramblase  Scramblase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.1   0.0   1.4e-07    0.0013      13      77 ..      55     122 ..      45     137 .. 0.83
   2 !   30.8   0.0   1.9e-11   1.7e-07     180     221 .]     283     326 ..     227     326 .. 0.82

  Alignments for each domain:
  == domain 1  score: 18.1 bits;  conditional E-value: 1.4e-07
  Scramblase  13 aaleiLleldsllveqqiellevllg..fEtaNrYvvkdva.gqkvavaaersnalaRqllgthRpfv 77 
                 ++ +iL++++s  v+q++++ e+l+g   E++N Y+  dva g +v va e+s+ l R ++ +  ++ 
  KOO23415.1  55 QTASILATINSFEVKQRVKFWETLTGgcCEQSNTYDFFDVAtGTHVFVAQEQSEDLLRFCCAPYHSLS 122
                 4568999******************7558**********8538999999***********98876655 PP

  == domain 2  score: 30.8 bits;  conditional E-value: 1.9e-11
  Scramblase 180 llrElftDadtyvvrFpl..dLdlklkavllgaafliDfdyFer 221
                 ++rE+f+D+d+++v+F     L++++ka ++ga++l D+++Fe+
  KOO23415.1 283 CVREAFSDSDHFTVTFREgiGLTPQQKASMMGALILSDYMFFEK 326
                 79**************986689********************96 PP

>> Peptidase_C74  Pestivirus NS2 peptidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   3.1e-05      0.27     116     177 ..     116     175 ..      94     184 .. 0.82

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 3.1e-05
  Peptidase_C74 116 grlrnliikhkvrnetvaswygeeevygmpkimtiikastlsksrhciictvcegrewkggt 177
                       + l ik+k+ n +   w  ++ +y +p  +t+ +       + c+ c +c+ r   g t
     KOO23415.1 116 APYHSLSIKFKLVNSAERQWMSKDSIYDLPTAFTLDREGCPH--KPCLGCLICNDRCKDGYT 175
                    4567899***************************99987655..579999999999877766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (377 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       478  (0.0266607); expected 358.6 (0.02)
Passed bias filter:                      269  (0.0150036); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.46u 0.23s 00:00:00.69 Elapsed: 00:00:00.39
# Mc/sec: 2901.71
//
Query:       KOO23416.1  [L=865]
Description: hypothetical protein Ctob_005205 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (865 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       726  (0.0404931); expected 358.6 (0.02)
Passed bias filter:                      339  (0.0189079); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.64u 0.26s 00:00:00.90 Elapsed: 00:00:00.42
# Mc/sec: 6174.01
//
Query:       KOO23417.1  [L=589]
Description: mitogen-activated protein kinase 8 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.6e-52  177.3   0.0    7.4e-52  176.3   0.0    1.5  1  Pkinase        Protein kinase domain
    1.1e-22   80.6   0.0    1.5e-18   67.0   0.0    2.1  2  Pkinase_Tyr    Protein tyrosine kinase
     0.0048   16.3   0.0     0.0097   15.3   0.0    1.4  1  Kdo            Lipopolysaccharide kinase (Kdo/WaaP) family
  ------ inclusion threshold ------
      0.032   13.5   0.0       0.18   11.1   0.0    1.9  2  Kinase-like    Kinase-like
       0.22   10.4   0.0       0.33    9.9   0.0    1.1  1  Haspin_kinase  Haspin like kinase domain


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  176.3   0.0   2.1e-55   7.4e-52      21     264 .]      10     315 ..       1     315 [. 0.88

  Alignments for each domain:
  == domain 1  score: 176.3 bits;  conditional E-value: 2.1e-55
                 TTTTEEEEEEEEECHCHCHHHH....HHHHHHHHHHHHHSCTTB--EEEEEEE...SSEEEEEEE--TTEBHHHHHHHHSS--HHHHHHHHHHHHHHHH CS
     Pkinase  21 ketgkivAvKkikkekakkkke....kkvlrEikilkklkhpnivrlyevfee...kdelylvleyveggeladllerkgslseeeakkiakqilegle 112
                 + ++++vA+Kk+    ++ k      k++lrE+ +l++l+h+n+++l +v+       ++y+v ++++ + l +++    +lse++++ +++q+l g++
  KOO23417.1  10 AGEEEHVAIKKMGGIFDETKGSlgeaKRALRELLLLRHLQHDNLLTLRHVMLPppdCGDVYIVSDLLDSD-LSRVIASPEALSEDHVRYFLYQLLCGVQ 107
                 567899****9876555554445567*************************986556789********66.******999******************* PP

                 HHHHTTEE-SS-SGGGEEEETTTEEEE-SGTTSEESSSSCS......................................BCTTTSCGGGS-HHHH.TTS CS
     Pkinase 113 ylHskgiiHrDlKpeNiLidekgelKitDFGlakelesssk......................................ltsfvgtseYlAPEvl.ken 172
                 +lHs++++HrDlKp+NiL++++ +l+i+DFGla+ l+++                                        +t++v+t++Y+APE+l  + 
  KOO23417.1 108 FLHSANVVHRDLKPSNILVNRECDLRIADFGLARSLDEKVVepsdlmpgvygesgsvdssssssggegarapglapsalMTQYVVTRWYRAPELLlLYD 206
                 *************************************9988999***************************************************99** PP

                 CBSHHHHHHHHHHHHHHHHHSS-STTTSSHHHHHHHHHHT.HHHHHHHCTSHH...HHHTTS......................-HHHHHHHHHHT-SS CS
     Pkinase 173 eyskkvDvWslGvilyelltgkppfsgekgkekvekeldq.lekilkilgetkeklpeasei......................seeakdllkkllkkd 248
                 +ys++vD+Ws+G+il+ell +kp+f+g++ k++ + ++d      ++ lg+++        i                      s ea++ll+ ll+ +
  KOO23417.1 207 KYSHAVDIWSVGCILAELLVRKPLFPGHNFKHQLQLIIDLvGSPPADSLGKVDAR------IqgfvrmwsgrpaqplatalpaaSAEALSLLEHLLQFQ 299
                 **************************77776655555555222223333344444......355555699999************************** PP

                 GCCSTTHHHHHTSGGG CS
     Pkinase 249 pkkRltaeellqhpyl 264
                 p++R+ a+ +l+h+yl
  KOO23417.1 300 PQDRIAADGALRHSYL 315
                 **************97 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.0   0.0   4.1e-22   1.5e-18      26     155 ..      11     145 ..       2     156 .. 0.85
   2 !   11.3   0.0   4.1e-05      0.15     168     200 ..     192     226 ..     184     244 .. 0.81

  Alignments for each domain:
  == domain 1  score: 67.0 bits;  conditional E-value: 4.1e-22
                  SSEEEEEEEEE.....STTSSHHHHHHHHHHHHHHHTS-BTTB--EEEEEE...SSSSEEEEEE--TTEBHHHHHHHTCTTTSBHHHHHHHHHHHHHH CS
  Pkinase_Tyr  26 kkevkVavKtl.....keeateeekeelleeakimkklkhpnivkllgvct...keepllivteyvkgGdLlkfLrkkekekltlkdllsfalqvAkG 115
                   +e++Va+K++     + + +  e ++ l+e+ ++++l+h+n++ l  v++   + + ++iv +++++ dL+  + +   e+l+ +++  f +q+ +G
   KOO23417.1  11 GEEEHVAIKKMggifdETKGSLGEAKRALRELLLLRHLQHDNLLTLRHVMLpppDCGDVYIVSDLLDS-DLSRVIASP--EALSEDHVRYFLYQLLCG 105
                  5788999*99944432223333458999***********************7766677******9985.9*****997..9***************** PP

                  HHHHHHTTEEEST-SGGGEEEEETTEEEE-STTTHEETTT CS
  Pkinase_Tyr 116 meyLeskklvHrdlaarNvLlsenkvvkisDfGLardiek 155
                  +++L+s ++vHrdl   N+L++++   +i+DfGLar++ +
   KOO23417.1 106 VQFLHSANVVHRDLKPSNILVNRECDLRIADFGLARSLDE 145
                  ************************************9933 PP

  == domain 2  score: 11.3 bits;  conditional E-value: 4.1e-05
                  GGGGS.-HHHH.HHSEEEHHHHHHHHHHHHHHHHT CS
  Pkinase_Tyr 168 pvkWm.apEsl.kekkftsksDvWsfGvllwEift 200
                    +W+ apE l  + k++++ D+Ws G +l E++ 
   KOO23417.1 192 VTRWYrAPELLlLYDKYSHAVDIWSVGCILAELLV 226
                  567877***8626789****************986 PP

>> Kdo  Lipopolysaccharide kinase (Kdo/WaaP) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.0   2.7e-06    0.0097      55     155 ..      35     130 ..      20     143 .. 0.77

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 2.7e-06
         Kdo  55 rtravrEfrllkrLeeagvavpkpvaagavkvgleyrAlllterlegaqdLedllakwaelaeelkrallkavgrliaklhragvnHadlyaknillqq 153
                 + ra rE+ ll+ L++  + +++ v+      g  y   +++  l+  +dL  ++a+ + l+e   r  l ++   ++ lh+a+v H+dl + nil++ 
  KOO23417.1  35 AKRALRELLLLRHLQHDNLLTLRHVMLPPPDCGDVY---IVSDLLD--SDLSRVIASPEALSEDHVRYFLYQLLCGVQFLHSANVVHRDLKPSNILVNR 128
                 567888888888888888888888888777776664...4444444..46677777666677788888888899999********************98 PP

         Kdo 154 ee 155
                 e 
  KOO23417.1 129 EC 130
                 75 PP

>> Kinase-like  Kinase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   5.1e-05      0.18     132     197 ..      77     146 ..      38     155 .. 0.78
   2 ?   -0.6   0.0      0.18   6.4e+02     226     238 ..     207     219 ..     198     224 .. 0.90

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 5.1e-05
  Kinase-like 132 qkrset.....hkkletiarlllTlqlirlaanLqakglvhgkftvdnllldekgglmlggftaLvragtk 197
                  ++  ++     ++  e++ r  l  ql+  ++ L++  +vh ++++ n+l +++  l + +f+  +   +k
   KOO23417.1  77 DSDLSRviaspEALSEDHVRYFL-YQLLCGVQFLHSANVVHRDLKPSNILVNRECDLRIADFGLARSLDEK 146
                  44444444334555678888889.999999*******************************9855555554 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 0.18
  Kinase-like 226 kmthkldaWqlGl 238
                  k++h++d W +G 
   KOO23417.1 207 KYSHAVDIWSVGC 219
                  79**********6 PP

>> Haspin_kinase  Haspin like kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   0.0   9.2e-05      0.33     230     257 ..     116     143 ..     109     151 .. 0.90

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 9.2e-05
  Haspin_kinase 230 HRdLhldniLvdknlnvtlidlklsRle 257
                    HRdL+  niLv+++    + d+ l+R  
     KOO23417.1 116 HRDLKPSNILVNRECDLRIADFGLARSL 143
                    **************************86 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (589 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       312  (0.017402); expected 358.6 (0.02)
Passed bias filter:                      241  (0.0134419); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.56u 0.25s 00:00:00.81 Elapsed: 00:00:00.43
# Mc/sec: 4122.41
//
Query:       KOO23418.1  [L=346]
Description: hypothetical protein Ctob_005198 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (346 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       375  (0.0209158); expected 358.6 (0.02)
Passed bias filter:                      216  (0.0120475); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.43u 0.25s 00:00:00.68 Elapsed: 00:00:00.40
# Mc/sec: 2617.78
//
Query:       KOO23419.1  [L=593]
Description: hypothetical protein Ctob_006098 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.3e-10   40.3   0.1    0.00048   19.9   0.0    2.5  2  EF-hand_6        EF-hand domain
    1.1e-09   37.2   0.1    0.00041   19.7   0.1    2.5  2  EF-hand_1        EF hand
    7.5e-09   35.9   0.0    1.5e-08   35.0   0.0    1.5  1  EF-hand_7        EF-hand domain pair
    2.4e-06   26.8   0.5      0.094   12.3   0.1    2.6  2  EF-hand_5        EF hand
    5.5e-05   22.9   0.7     0.0076   16.1   0.0    2.6  3  EF-hand_8        EF-hand domain pair
  ------ inclusion threshold ------
      0.075   12.7   0.8       0.14   11.8   0.8    1.4  1  Sigma54_activat  Sigma-54 interaction domain


Domain annotation for each model (and alignments):
>> EF-hand_6  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.9   0.0   1.6e-07   0.00048       3      30 ..     224     250 ..     222     251 .. 0.88
   2 !   18.0   0.0   6.2e-07    0.0018       2      28 ..     259     285 ..     258     295 .. 0.88

  Alignments for each domain:
  == domain 1  score: 19.9 bits;  conditional E-value: 1.6e-07
   EF-hand_6   3 reaFklfDkdgdGkidaeElrkalrkal 30 
                  ++F+++D dgdG++ ++Elrka   +l
  KOO23419.1 224 LDLFRQWDSDGDGTVRKAELRKAVA-LL 250
                 689*******************987.55 PP

  == domain 2  score: 18.0 bits;  conditional E-value: 6.2e-07
   EF-hand_6   2 lreaFklfDkdgdGkidaeElrkalrk 28 
                 ++++F+ fD+dg G i ++El++++r+
  KOO23419.1 259 VDKLFESFDRDGGGAIEYKELQRVIRR 285
                 6799********************995 PP

>> EF-hand_1  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.0     4e-06     0.012       3      27 ..     224     248 ..     222     250 .. 0.89
   2 !   19.7   0.1   1.4e-07   0.00041       1      28 [.     258     285 ..     258     286 .. 0.94

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 4e-06
                 HHHHHHHTTTSSSEEEHHHHHHHHH CS
   EF-hand_1   3 keiFrefDkDgdGkIdfeEfkellk 27 
                  ++Fr  D DgdG++ + E++++++
  KOO23419.1 224 LDLFRQWDSDGDGTVRKAELRKAVA 248
                 689******************9986 PP

  == domain 2  score: 19.7 bits;  conditional E-value: 1.4e-07
                 HHHHHHHHHTTTSSSEEEHHHHHHHHHH CS
   EF-hand_1   1 elkeiFrefDkDgdGkIdfeEfkellkk 28 
                 e++++F+ fD+Dg G I+++E+++++++
  KOO23419.1 258 EVDKLFESFDRDGGGAIEYKELQRVIRR 285
                 79**********************9986 PP

>> EF-hand_7  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.0   0.0     5e-12   1.5e-08       4      70 ..     223     283 ..     221     284 .. 0.93

  Alignments for each domain:
  == domain 1  score: 35.0 bits;  conditional E-value: 5e-12
   EF-hand_7   4 lkeaFkelDtdgdgyldkeellrllrkifqgagegsklsdeelellfkefDtdkdGvisfdEFlkly 70 
                 + + F++ D+dgdg ++k+el++++         g +++  e+++lf+ fD d+ G i + E+++ +
  KOO23419.1 223 VLDLFRQWDSDGDGTVRKAELRKAVA------LLGYDVPNVEVDKLFESFDRDGGGAIEYKELQRVI 283
                 5679*********************9......99****************************99875 PP

>> EF-hand_5  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.2   0.0   3.2e-05     0.097       3      23 ..     225     245 ..     223     248 .. 0.90
   2 !   12.3   0.1   3.1e-05     0.094       2      24 ..     260     282 ..     259     283 .. 0.92

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 3.2e-05
                 HHHHHH-SS-SSCE-HHHHHH CS
   EF-hand_5   3 dtFqaiDlNgDGkIskeELkt 23 
                 d+F++ D +gDG++ k EL++
  KOO23419.1 225 DLFRQWDSDGDGTVRKAELRK 245
                 78****************987 PP

  == domain 2  score: 12.3 bits;  conditional E-value: 3.1e-05
                 HHHHHHH-SS-SSCE-HHHHHHH CS
   EF-hand_5   2 kdtFqaiDlNgDGkIskeELktl 24 
                 +++F+ +D +g G I   EL+++
  KOO23419.1 260 DKLFESFDRDGGGAIEYKELQRV 282
                 579******************97 PP

>> EF-hand_8  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.0       2.3   6.9e+03      15      31 ..       6      20 ..       4      20 .. 0.78
   2 !    5.6   0.0    0.0048        14      30      47 ..     225     242 ..     216     242 .. 0.84
   3 !   16.1   0.0   2.5e-06    0.0076       8      47 ..     241     278 ..     239     282 .. 0.95

  Alignments for each domain:
  == domain 1  score: -3.0 bits;  conditional E-value: 2.3
   EF-hand_8 15 rilglkkglseeevdil 31
                +++g+    +e+e+++l
  KOO23419.1  6 STIGMS--ANEKELQEL 20
                677888..999999976 PP

  == domain 2  score: 5.6 bits;  conditional E-value: 0.0048
   EF-hand_8  30 ilfrefDtdgdGkisfeE 47 
                 +lfr  D dgdG++ + E
  KOO23419.1 225 DLFRQWDSDGDGTVRKAE 242
                 79***********97765 PP

  == domain 3  score: 16.1 bits;  conditional E-value: 2.5e-06
   EF-hand_8   8 eelrrilrilglkkglseeevdilfrefDtdgdGkisfeE 47 
                 +elr+++++lg+   + + evd lf  fD+dg G+i ++E
  KOO23419.1 241 AELRKAVALLGYD--VPNVEVDKLFESFDRDGGGAIEYKE 278
                 79***********..**********************999 PP

>> Sigma54_activat  Sigma-54 interaction domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.8   4.8e-05      0.14      58      96 ..     387     425 ..     364     427 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 4.8e-05
                      TTTS-TTCHHHHHHEBSSSSSTTTSS-BEHHHHHTTTSE CS
  Sigma54_activat  58 caaipeelleseLFGhekGaFtGAekekkGlfekadgGt 96 
                       a++pe ll+s+ F +e+Ga  GA+++ +G+  +a+ G 
       KOO23419.1 387 GAKLPEALLTSTAFDTEEGAVVGATSNAAGASAAASTGA 425
                      4789****************************9999986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (593 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1017  (0.0567237); expected 358.6 (0.02)
Passed bias filter:                      470  (0.0262145); expected 358.6 (0.02)
Passed Vit filter:                        70  (0.00390429); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.67u 0.28s 00:00:00.95 Elapsed: 00:00:00.44
# Mc/sec: 4013.53
//
Query:       KOO23420.1  [L=238]
Description: 14-3-3 protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.1e-94  316.1   4.3    1.3e-94  315.9   4.3    1.0  1  14-3-3    14-3-3 protein
  ------ inclusion threshold ------
       0.96    9.8   5.8        1.6    9.1   0.5    3.4  3  TPR_8     Tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> 14-3-3  14-3-3 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  315.9   4.3   1.4e-98   1.3e-94       1     222 []       9     231 ..       9     231 .. 0.98

  Alignments for each domain:
  == domain 1  score: 315.9 bits;  conditional E-value: 1.4e-98
                 HHHHHHHCCHHHHHHHHHCHHHHC.SS---HCHHHHHHHHHHHHHHHHHHHCHHHHHHHCCCCTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC CS
      14-3-3   1 laklaeqaeryddmveymkkvvel.keeLskeernlLsvayKnvvgarRaswrvlssieqkeeskeekkvelikeyrekiekeLkeiceevlelldktl 98 
                 +aklaeqaeryd+mveymkkv++  +++Ls eernlLsvayKnvvgarRas+r++ si++ke +k+ +k++l+ +y++k+ +eL++ic+++lell +tl
  KOO23420.1   9 MAKLAEQAERYDEMVEYMKKVAQAaSNDLSLEERNLLSVAYKNVVGARRASLRIIGSIKSKEMEKGGDKTALVTTYEAKVLDELNKICTDILELLSSTL 107
                 79*********************999****************************************99******************************* PP

                 HCH..-SHHHHHHHHHHHHHHHHHHHCC--HHHHHHHHHHHHHHHHHHHHHHHTTTGCC-HHHHHHHHHHHHHHHCTT--HHHHHHHHHHHHHCCHCCC CS
      14-3-3  99 ipka.tseeskvfylkmkgDyyRYlaEfaegeekkeaaekakeaYeeAleiakkelqpthpirLglaLNySVflyeilnspekAcelakkafdeaiael 196
                 i+ka  s+e+ vfylkmk+DyyRYlaEfa+g +k e+a++a+eaY++A++ a + l+pthpirLglaLN+SVflye++ ++++Ac+lak+afd+aiael
  KOO23420.1 108 IEKAgGSAEASVFYLKMKADYYRYLAEFAQGGTKLEHATNAEEAYKSATDKA-SGLAPTHPIRLGLALNFSVFLYEVQGKSQEACDLAKQAFDDAIAEL 205
                 *666699*********************************************.89******************************************** PP

                 CCS.TTTHHHHHHHHHHHHHHHHHHC CS
      14-3-3 197 delseesykdstlilqlLrdnltlWt 222
                 d+l+eesykdstli+qlLrdnltlWt
  KOO23420.1 206 DTLDEESYKDSTLIMQLLRDNLTLWT 231
                 *************************8 PP

>> TPR_8  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.1   0.5   0.00018       1.6       8      33 ..      10      35 ..       9      36 .. 0.87
   2 ?    1.1   0.1     0.065   5.9e+02      13      28 ..     141     156 ..     139     157 .. 0.84
   3 ?   -1.5   0.1      0.45   4.1e+03      16      27 ..     186     197 ..     180     202 .. 0.55

  Alignments for each domain:
  == domain 1  score: 9.1 bits;  conditional E-value: 0.00018
                HHHHHHTT-HHHHHHHHHHHHHHHHH CS
       TPR_8  8 gsiylklgdyeeAkeyyekaleldpd 33
                +++ ++ ++y+e++ey++k+ +++ +
  KOO23420.1 10 AKLAEQAERYDEMVEYMKKVAQAASN 35
                7788999************9988766 PP

  == domain 2  score: 1.1 bits;  conditional E-value: 0.065
                 HTT-HHHHHHHHHHHH CS
       TPR_8  13 klgdyeeAkeyyekal 28 
                 kl+   +A+e+y+ a+
  KOO23420.1 141 KLEHATNAEEAYKSAT 156
                 6788899*****9886 PP

  == domain 3  score: -1.5 bits;  conditional E-value: 0.45
                 -HHHHHHHHHHH CS
       TPR_8  16 dyeeAkeyyeka 27 
                 + +eA    ++a
  KOO23420.1 186 KSQEACDLAKQA 197
                 555555444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (238 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       857  (0.0477997); expected 358.6 (0.02)
Passed bias filter:                      530  (0.029561); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.42u 0.27s 00:00:00.69 Elapsed: 00:00:00.41
# Mc/sec: 1750.32
//
Query:       KOO23421.1  [L=441]
Description: udp-n-acetylglucosamine transporter-like protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    5.7e-85  285.2  18.9      7e-85  285.0  18.9    1.0  1  Nuc_sug_transp  Nucleotide-sugar transporter
    3.8e-05   23.9   6.0    3.8e-05   23.9   6.0    2.3  2  EamA            EamA-like transporter family
  ------ inclusion threshold ------
        6.4    6.4  10.7          3    7.4   7.5    1.9  2  RTX             N-terminal domain in RTX protein


Domain annotation for each model (and alignments):
>> Nuc_sug_transp  Nucleotide-sugar transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  285.0  18.9   1.2e-88     7e-85       3     315 .]      35     353 ..      33     353 .. 0.94

  Alignments for each domain:
  == domain 1  score: 285.0 bits;  conditional E-value: 1.2e-88
  Nuc_sug_transp   3 eklkyislvvlvvqnaslvltlrYartk..edkerylsttavllaeilklvvclllllkeekskvkkllrelkkeilakpkdtlklavPsliYtv 95 
                       +ky  +v+lv+qn+   +  r +r+     ++ yl ++avl+ae++kl +cl l++k+ +    ++l+++ ++i+++++ tl++avP+l Y +
      KOO23421.1  35 ALVKYALIVLLVLQNSLTAILARNSRIPpaGGGQLYLGSVAVLVAEVIKLPICLGLIAKDVGGVR-AMLQQVWQQIFVRWRSTLQMAVPALCYCL 128
                     568************************9767899**************************99876.9**************************** PP

  Nuc_sug_transp  96 qnnllyvalsnLdaatyqvtyqlkilttalfsvllLkrklskkqWlslllLvaGvalvqlkqkeseesekaaaaa.....keensvlGliavlaa 185
                     qn l +vals+L a++yq+  q k l talf v+ L++ l ++qW++l lL aGv lvq++++  +    aaaaa       +   +G++avla+
      KOO23421.1 129 QNALFFVALSRLSATSYQLWSQSKTLFTALFFVFYLGKPLRRQQWIALSLLSAGVGLVQYTEAAMKGGAAAAAAAaassvAGSAVAVGVAAVLAS 223
                     ************************************************************998877666655555456655667789******** PP

  Nuc_sug_transp 186 cllsgfaGvYfekiLkd.snvslWirniqlallsiilalltvllkdgskisekGffkGydlvvwvvvllqavGGlvvavvvkyaDnilkgfatsl 279
                      llsgfa vYfek++k+ s+vs+W+rn+ql l+s++ a   ++++d+ +i+ +G + G+  +vw vvll+a+GGl+va vvkyaDn+lk++at++
      KOO23421.1 224 SLLSGFANVYFEKVVKTqSDVSIWMRNVQLGLFSLPQAAA-LVVADWPTIAAQGPLVGFSALVWNVVLLKALGGLLVAAVVKYADNVLKTYATAI 317
                     ****************63789***************9987.899*************************************************** PP

  Nuc_sug_transp 280 aiilstvasvllldlkitllFllGallviaavflYs 315
                     ai+l+  + ++     +t+ Fl G  +via++flY+
      KOO23421.1 318 AIVLTFAVGCVQTRTMPTIAFLQGLAMVIASIFLYN 353
                     *******9*999***********************6 PP

>> EamA  EamA-like transporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.9   6.0   6.3e-09   3.8e-05      64     135 ..     113     186 ..      39     188 .. 0.81
   2 !    4.3  14.5    0.0071        43       3     136 ..     216     353 ..     214     354 .. 0.93

  Alignments for each domain:
  == domain 1  score: 23.9 bits;  conditional E-value: 6.3e-09
        EamA  64 wllllllgl..lgtvlafllffyalkktsasnaslitslePvftlilsvlllgekltlkqllgivlillGvlli 135
                 w + l +++  l+ +l + lff al+++sa+   l +    +ft+++ v++lg++l   q++++ l  +Gv l+
  KOO23421.1 113 WRSTLQMAVpaLCYCLQNALFFVALSRLSATSYQLWSQSKTLFTALFFVFYLGKPLRRQQWIALSLLSAGVGLV 186
                 55555566655999999*****************************************************9887 PP

  == domain 2  score: 4.3 bits;  conditional E-value: 0.0071
        EamA   3 gillallaalfwaiyfvlskillrkvspltltf..vrfliagillliiallkegkl..aklslkdwllllllgllgtvlafllffyalkktsasnasli 97 
                 g+  +l+++l+++++ v+  +++++ s +++ +  v++ + ++   + +++ +++   a+ +l ++ +l+   +l  +l+ ll    +k+ +    +++
  KOO23421.1 216 GVAAVLASSLLSGFANVYFEKVVKTQSDVSIWMrnVQLGLFSLPQAAALVVADWPTiaAQGPLVGFSALVWNVVLLKALGGLLVAAVVKYADNVLKTYA 314
                 78899*********************9996666559999888888999999999999999999999********************************* PP

        EamA  98 tslePvftlilsvlllgekltlkqllgivlillGvllil 136
                 t+++ v+t   + +  +  +t+  l g+++++++++l +
  KOO23421.1 315 TAIAIVLTFAVGCVQTRTMPTIAFLQGLAMVIASIFLYN 353
                 ************************************976 PP

>> RTX  N-terminal domain in RTX protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.1      0.22   1.3e+03      91     127 ..      73     110 ..      70     116 .. 0.85
   2 ?    7.4   7.5    0.0005         3      80     132 ..     189     239 ..     180     250 .. 0.83

  Alignments for each domain:
  == domain 1  score: -1.3 bits;  conditional E-value: 0.22
         RTX  91 vsaaaaasgVGaPval.lvalitglisgileaskqail 127
                  +a+++a ++  P+ l l+a  +g++ ++l+ + q i+
  KOO23421.1  73 SVAVLVAEVIKLPICLgLIAKDVGGVRAMLQQVWQQIF 110
                 57889999999999986789999999999999988776 PP

  == domain 2  score: 7.4 bits;  conditional E-value: 0.0005
         RTX  80 istvldvvsavvsaaaaasgVGaPvallvalitglisgileaskqailekvAe 132
                 + ++++  +a+++aaaa+s+ G+ va+ va++ +  s++l ++  + +ekv +
  KOO23421.1 189 TEAAMKGGAAAAAAAAASSVAGSAVAVGVAAVLA--SSLLSGFANVYFEKVVK 239
                 556777778888999999999*****99999965..89************975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (441 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       953  (0.0531541); expected 358.6 (0.02)
Passed bias filter:                      363  (0.0202465); expected 358.6 (0.02)
Passed Vit filter:                        47  (0.00262145); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.54u 0.24s 00:00:00.78 Elapsed: 00:00:00.41
# Mc/sec: 3210.50
//
Query:       KOO23422.1  [L=142]
Description: thioredoxin-like protein 4a [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    5.9e-67  223.5   0.0    6.6e-67  223.3   0.0    1.0  1  DIM1            Mitosis protein DIM1
     0.0054   16.7   0.0     0.0072   16.3   0.0    1.1  1  Thioredoxin     Thioredoxin
  ------ inclusion threshold ------
       0.15   12.0   0.1       0.26   11.2   0.1    1.4  1  Thioredox_DsbH  Protein of unknown function, DUF255


Domain annotation for each model (and alignments):
>> DIM1  Mitosis protein DIM1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  223.3   0.0   1.1e-70   6.6e-67       1     133 []       4     136 ..       4     136 .. 0.99

  Alignments for each domain:
  == domain 1  score: 223.3 bits;  conditional E-value: 1.1e-70
                 TS-EE-SHHHHHHHHHH-SSSEEEEEEE-TT-HHHHHHHHHHHHHHHHTTTTEEEEEEETTT--TTSCCCTT-SSSEEEEEETTEEEEEE-SSS--SSB CS
        DIM1   1 llpkLetkeevdqailseeerlvviRFGrdedaeClklDelLakiaeklknfaviylvdidevpdfnkmyeledpvtilffyrnkhmkvDfgtgdnnKl 99 
                 l+p+L+t+++vdqailsee+r+vv+RFG+d d++C+++De+L+ iae +kn+aviylvdi+evpdfn+myel+dp+t++ff+rnkh+++D+gtg+nnK+
  KOO23422.1   4 LMPHLNTGWAVDQAILSEEDRVVVLRFGHDYDPTCMQMDEVLYGIAELVKNYAVIYLVDISEVPDFNTMYELYDPCTVMFFFRNKHIMIDLGTGNNNKI 102
                 589************************************************************************************************ PP

                 -S----HHHHHHHHHHHHHHHHHT-SEEE-SS-T CS
        DIM1 100 nfvledkqelidiietiyrgakkgkglvvspidy 133
                 n+++ dkqe+idi+etiyrga+kg+glvvsp+dy
  KOO23422.1 103 NWAIPDKQEMIDIVETIYRGARKGRGLVVSPKDY 136
                 ********************************97 PP

>> Thioredoxin  Thioredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.0   1.2e-06    0.0072      13      87 ..      18      92 ..       9     107 .. 0.82

  Alignments for each domain:
  == domain 1  score: 16.3 bits;  conditional E-value: 1.2e-06
                 HHTTTSSEEEEEEE-TTSHHHHCHHHHHHHHHHHCTTTSEEEEEETTTSHHHHHHTT-SSSSEEEEEETTEEEEE CS
  Thioredoxin 13 evakekklvlveFyApwCghCkalaPeleklaeelkdkvklakvdvdenedlakkyevegiPtlklfkngkevkk 87
                  +++e++ v++ F  ++ + C ++  +l  +ae +k+  +++ vd+ e +d  + ye     t+++f  +k++  
   KOO23422.1 18 ILSEEDRVVVLRFGHDYDPTCMQMDEVLYGIAELVKNYAVIYLVDISEVPDFNTMYELYDPCTVMFFFRNKHIMI 92
                 45568899999***********************************************99999988877774433 PP

>> Thioredox_DsbH  Protein of unknown function, DUF255
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.1   4.4e-05      0.26      34      91 ..      20      74 ..       9      82 .. 0.90

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 4.4e-05
  Thioredox_DsbH 34 keedkpillsiGysachWChvmekesfedeevaallnesfvsvkvDreerPdldkiym 91
                    +eed+ ++l  G   +  C  m++  +    +a+l+ ++ v   vD  e Pd +++y 
      KOO23422.1 20 SEEDRVVVLRFGHDYDPTCMQMDEVLY---GIAELVKNYAVIYLVDISEVPDFNTMYE 74
                    689*********************999...59************************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (142 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       330  (0.0184059); expected 358.6 (0.02)
Passed bias filter:                      283  (0.0157845); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.37u 0.27s 00:00:00.64 Elapsed: 00:00:00.41
# Mc/sec: 1031.60
//
Query:       KOO23423.1  [L=569]
Description: metal dependent phosphohydrolase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.5e-13   50.8   0.0    4.3e-13   50.0   0.0    1.4  1  PhyH      Phytanoyl-CoA dioxygenase (PhyH)


Domain annotation for each model (and alignments):
>> PhyH  Phytanoyl-CoA dioxygenase (PhyH)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.0   0.0   2.4e-17   4.3e-13       1     211 []     293     507 ..     293     507 .. 0.67

  Alignments for each domain:
  == domain 1  score: 50.0 bits;  conditional E-value: 2.4e-17
                 HHHHSEEEETT.....SS-HHHHHHHHHHHHHHHHHCHTTCCSEEEEECEEESTTCCCEECCCHHCHHHHTTH..........HHHHHHHHHHHTSCEE CS
        PhyH   1 feedGylvieg.....flsaeevealraeiealldralesgdkidfffeekaaadedglleksinkvghflhp..........rkvadlvrailgqdvy 84 
                 ++e+Gy+v++      + +ae++ +++ e+ +l  +     ++    +e++ +++ +++    +++    +hp            ++++vr + g++v+
  KOO23423.1 293 WHEKGYVVLRCeewlgASTAEQLGRFAHEVPKL-PYDGVCVNGPFHTWEKDVDGK-TVPS---RTEAYADHHPglnaflrgpdSPLQAVVRLLAGEAVA 386
                 578888888888855555556666666666665.333333333333333333333.2222...344444444444444444566899999999998886 PP

                 EEEEEEEEEEEEEE-TTTCB-EEEEE-SGGGST.....EES.GCCEEE..EEEESS-B-TTBT-EEEETTGGGS-CCGTCCHHCSGCCTTSCCCTTTGH CS
        PhyH  85 vaavlqsmyqdifkqpkiGgevqpwHqDstflp.....tdp.eesvvg..vwialedateenGclrfiPGSHkweegplrrrlpeddteaeddeakked 175
                       + +  ++k+p  Gg++++ HqD ++         p  + +++  +++a++ +t +nGc  +  G  +w   ++++++ +++++++  ++  +d
  KOO23423.1 387 L---YKDKL--NYKAP--GGGGYAQHQDGYRGLgvpqyESPeKRGFIAyvCMVAVDAMTLANGCPEV--GWETW---QRKEGWLQHRDDDG--KWTCSD 471
                 4...44444..88888..666679********987755233766666677****************9..55555...34456777776655..67777* PP

                 GSCEEEE.BTTTEEEEEETTSEEEE-TB.SSSXEEE CS
        PhyH 176 eeeavpvevkaGdavlfhgrllHgsgaNrsdksRra 211
                   ++ p+e+++Gd+++++    H+s+ N+s+ +Rra
  KOO23423.1 472 MGPFHPIELDKGDVLIYDNFMPHRSAKNTSNTWRRA 507
                 **********************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (569 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       280  (0.0156172); expected 358.6 (0.02)
Passed bias filter:                      259  (0.0144459); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.50u 0.24s 00:00:00.74 Elapsed: 00:00:00.41
# Mc/sec: 4139.45
//
Query:       KOO23424.1  [L=412]
Description: transmembrane protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.3e-08   33.1   2.9    9.4e-08   31.6   2.9    1.7  1  PUNUT           Purine nucleobase transmembrane transport
      4e-06   27.0   2.4      4e-06   27.0   2.4    3.5  2  EamA            EamA-like transporter family
      2e-05   24.0   4.7    5.1e-05   22.6   1.3    2.6  2  UAA             UAA transporter family
     0.0063   16.1   0.9     0.0063   16.1   0.9    2.4  2  SLC35F          Solute carrier family 35
  ------ inclusion threshold ------
       0.03   13.5   0.2      0.057   12.6   0.2    1.4  1  Nuc_sug_transp  Nucleotide-sugar transporter
      0.033   14.2   0.3       0.26   11.4   0.1    2.3  2  TMEM234         Putative transmembrane family 234
      0.067   12.1   8.5       0.93    8.4   4.9    2.6  2  CRT-like        CRT-like, chloroquine-resistance transporter-


Domain annotation for each model (and alignments):
>> PUNUT  Purine nucleobase transmembrane transport
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.6   2.9   3.7e-11   9.4e-08      79     314 ..     110     367 ..      84     372 .. 0.81

  Alignments for each domain:
  == domain 1  score: 31.6 bits;  conditional E-value: 3.7e-11
       PUNUT  79 ivlGllvavdnllyslgllylpvstfslilatqLaFtaifsalinkqkftrfiinsvvlltisaallalssssdkpaees..kkkyvigfiltlaasll 175
                 i+   l ++ + l   gll +p+s  ++++++  +F+a++  l+ k+ + r  ++++ +lt + +l++ls+  ++ a++   ++  +ig+ l l a l+
  KOO23424.1 110 IIPAALDFLGSWLIFAGLLWVPASAETMLASAGTVFNALIRWLFLKKPLRRKEVFAIAVLTCGCTLIGLSQLLESKASSIglSNTLLIGVGLCLCAELA 208
                 4445566677888889******************************************************9888777766568999************* PP

       PUNUT 176 faLlLslvellfekvlkket.........fslvlemqivlslvatvvcvvGllisGefk.elkkeaeeFkkGkslYvlvlvgsavswQvlavGavgLvf 264
                 +a   s+ e+l ++    +t         + +v  + i++ l+at        +s  ++ ++  +++  ++ + l++l+ v+  v    + +G+ g+  
  KOO23424.1 209 MAAENSVGEVLLQQSE-LSTyasvgamgmYGVVAYVPIFAVLAATPNPPALCNVSAIWHeDIRDDMHMLSDSAELWILIGVAF-VCLFFYNIGLFGVCE 305
                 **99999999999887.3553466666777777777777777777544444444444444899**************998875.566699********* PP

       PUNUT 265 lvSslfsnvistvllpvvsvlavilfr............dkfsavkgvalllailgfasYvY 314
                   S+l s v++ +  p+v ++ + l+              ++s+ + v   l i+g + + Y
  KOO23424.1 306 HGSALQSAVLNLLVAPLVWLIDMSLYWtghgrmgtaerwHELSWLQLVGFGLVIMGTVIFHY 367
                 ******************99998888667778888877778888888888888888888887 PP

>> EamA  EamA-like transporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.0   2.4   1.6e-09     4e-06      58     135 ..      99     176 ..      45     178 .. 0.82
   2 ?   -0.6   9.3      0.53   1.4e+03       3     134 ..     198     364 ..     196     367 .. 0.60

  Alignments for each domain:
  == domain 1  score: 27.0 bits;  conditional E-value: 1.6e-09
        EamA  58 klslkdwllllllgllgtvlafllffyalkktsasnaslitslePvftlilsvlllgekltlkqllgivlillGvlli 135
                   +l+  llll++ +   +l+ +l+f +l  ++as  +++ s   vf +++ +l+l+++l  k++++i++  +G+ li
  KOO23424.1  99 GTRLRRELLLLIIPAALDFLGSWLIFAGLLWVPASAETMLASAGTVFNALIRWLFLKKPLRRKEVFAIAVLTCGCTLI 176
                 44555556666666666788889****************************************************998 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 0.53
        EamA   3 gillallaalfwaiyfvlskillrkv..spltltfvrfliagilllii..................allkegkl..aklslkdwlll.lllgllgtvla 78 
                 g+ l+l+a l +a+   +  +ll++   s+++ ++ + + + ++ ++i                  ++++++++    ls ++ l++ + +++++ +++
  KOO23424.1 198 GVGLCLCAELAMAAENSVGEVLLQQSelSTYASVGAMGMYGVVAYVPIfavlaatpnppalcnvsaIWHEDIRDdmHMLSDSAELWIlIGVAFVCLFFY 296
                 555666666666666666666644441133333333333555555555555566666777777766777777777744555555555488999999999 PP

        EamA  79 fllffyalkktsasnasli.tslePvftlilsvlll.g..........ekltlkqllgivlillGvll 134
                 ++ +f   +++sa + +++ ++++P++ li  +l++ g            l+++ql+g++l+++G+++
  KOO23424.1 297 NIGLFGVCEHGSALQSAVLnLLVAPLVWLIDMSLYWtGhgrmgtaerwHELSWLQLVGFGLVIMGTVI 364
                 99999999999999999994556777777755555522233333322235777777777777777765 PP

>> UAA  UAA transporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.6   1.3     2e-08   5.1e-05       4     186 ..       8     229 ..       5     320 .. 0.69
   2 ?    1.8   0.1     0.044   1.1e+02     278     300 ..     345     367 ..     344     369 .. 0.91

  Alignments for each domain:
  == domain 1  score: 22.6 bits;  conditional E-value: 2e-08
         UAA   4 lavslvfvgccsnvvllElivkeepkafg........nlltfvqflfvalegllesid....i........................lkkrkiPlkt.. 64 
                 +a+ +v++  +   ++ E  +++ + + g         +l +v fl++a++gl+   +                             lk + + l++  
  KOO23424.1   8 FATMMVVSNTLLTPITREIYATKAHDRSGklrsfsnpFFLEYVMFLAMACVGLVDVAIhcrrRkvrtslvqadlpgtpmliasdatpLKTPGTRLRRel 106
                 566666666666666666666666655564444444445555558888888887665545440445556666677777777777666555555555422 PP

         UAA  65 ..YvilvalffitsvlnnealkydisvPvhiifrssklipvmilGililgkrYsllqylsvllltlGviiftllsakdkkedskeslnkfllGiallvl 161
                    +i +al f+ s+l    l + ++  + +++ s++++ + ++ +l+l+k  +  ++ ++++lt G+ +  l++  ++k+ s    n+ l+G+ l++ 
  KOO23424.1 107 llLIIPAALDFLGSWLIFAGLLW-VPASAETMLASAGTVFNALIRWLFLKKPLRRKEVFAIAVLTCGCTLIGLSQLLESKASSIGLSNTLLIGVGLCLC 204
                 1134557899999**********.*************************************************99999999999999999********* PP

         UAA 162 allldavlglvqeklykkygkhske 186
                 a l++a  + v e l ++ + ++  
  KOO23424.1 205 AELAMAAENSVGEVLLQQSELSTYA 229
                 ******9999888887766555544 PP

  == domain 2  score: 1.8 bits;  conditional E-value: 0.044
         UAA 278 npltlqhlvgtllVflglllysy 300
                 ++l++ +lvg  lV++g++++ y
  KOO23424.1 345 HELSWLQLVGFGLVIMGTVIFHY 367
                 789****************9987 PP

>> SLC35F  Solute carrier family 35
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.9   2.5e-06    0.0063      77     203 ..     110     240 ..      50     251 .. 0.85
   2 ?    0.5   0.3      0.14   3.6e+02     278     298 ..     346     366 ..     337     367 .. 0.89

  Alignments for each domain:
  == domain 1  score: 16.1 bits;  conditional E-value: 2.5e-06
      SLC35F  77 lllalvdveanylvvkayqytsltsvqlldcfaipvvlvlswlflkvryrlvkiigvvvcilGvvllvvsdvlagrra.nsgsnp.vlGdllvlaGatl 173
                 ++ a +d  + +l+     +    + ++l + +++   ++ wlflk   r  ++ +++v   G +l+  s +l  + +  + sn+ ++G  l l     
  KOO23424.1 110 IIPAALDFLGSWLIFAGLLWVPASAETMLASAGTVFNALIRWLFLKKPLRRKEVFAIAVLTCGCTLIGLSQLLESKASsIGLSNTlLIGVGLCLCAELA 208
                 556667777777777777777777778899999999999********************************9997776445566526899999999999 PP

      SLC35F 174 yavsnvleeylvkk..lslvellgllglfGai 203
                  a  n + e l+++  ls++  +g +g++G +
  KOO23424.1 209 MAAENSVGEVLLQQseLSTYASVGAMGMYGVV 240
                 9*********997522788999********76 PP

  == domain 2  score: 0.5 bits;  conditional E-value: 0.14
      SLC35F 278 kvswlyllafvviliGlilys 298
                 ++swl l+ f ++++G ++++
  KOO23424.1 346 ELSWLQLVGFGLVIMGTVIFH 366
                 689***************997 PP

>> Nuc_sug_transp  Nucleotide-sugar transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.2   2.2e-05     0.057      80     166 ..     103     189 ..      93     248 .. 0.81

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 2.2e-05
  Nuc_sug_transp  80 pkdtlklavPsliYtvqnnllyvalsnLdaatyqvtyqlkilttalfsvllLkrklskkqWlslllLvaGvalvqlkqkeseeseka 166
                     ++++l l +P+++  +   l + +l  ++a++ ++      +  al+  l+Lk+ l +k+ +++ +L+ G +l+ l+q  ++++++ 
      KOO23424.1 103 RRELLLLIIPAALDFLGSWLIFAGLLWVPASAETMLASAGTVFNALIRWLFLKKPLRRKEVFAIAVLTCGCTLIGLSQLLESKASSI 189
                     57899999**********************99999999999999******************************9999877665553 PP

>> TMEM234  Putative transmembrane family 234
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.1    0.0001      0.26      48     115 ..     110     176 ..     102     177 .. 0.91
   2 ?   -0.2   0.0      0.39   9.9e+02      97     114 ..     347     364 ..     333     366 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.0001
     TMEM234  48 liplllNqsgSvlfflllgkadlslavpiaNslafvfTvltelllgekvlkkktvlgmllvvvgialc 115
                 +ip +l  +gS l f+ l  ++ s   ++a s   vf +l+ +l  +k l++k v  +++ ++g +l+
  KOO23424.1 110 IIPAALDFLGSWLIFAGLLWVPASAETMLA-SAGTVFNALIRWLFLKKPLRRKEVFAIAVLTCGCTLI 176
                 799*******************99877666.778899****************************998 PP

  == domain 2  score: -0.2 bits;  conditional E-value: 0.39
     TMEM234  97 lkkktvlgmllvvvgial 114
                 l++ +++g +lv++g+++
  KOO23424.1 347 LSWLQLVGFGLVIMGTVI 364
                 56678899*******987 PP

>> CRT-like  CRT-like, chloroquine-resistance transporter-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.1      0.46   1.2e+03     285     307 ..       9      31 ..       7      59 .. 0.85
   2 ?    8.4   4.9   0.00036      0.93      72     221 ..     110     265 ..      98     365 .. 0.80

  Alignments for each domain:
  == domain 1  score: -1.8 bits;  conditional E-value: 0.46
    CRT-like 285 atvlsiastlrlPltnivfslkf 307
                 at++++ +tl  P+t  +++ k+
  KOO23424.1   9 ATMMVVSNTLLTPITREIYATKA 31 
                 78889999999999999998765 PP

  == domain 2  score: 8.4 bits;  conditional E-value: 0.00036
    CRT-like  72 aimgaLDavsgilvvigavstsGslqvllnqaiipitllasllllkerysliqylGAlviilgvvvvlipsllgesse....gnklvfnl.lllisviP 165
                 +i +aLD ++++l + g   +  s  ++l  a ++++ l+  l+lk+     ++   +v++ g  ++  ++ll +  +    +n+l+  + l l++ + 
  KOO23424.1 110 IIPAALDFLGSWLIFAGLLWVPASAETMLASAGTVFNALIRWLFLKKPLRRKEVFAIAVLTCGCTLIGLSQLLESKASsiglSNTLLIGVgLCLCAELA 208
                 45579********************************************************99986666666554433243447777766467889999 PP

    CRT-like 166 valSnvykeiafkeveldvlyLqawvalfqlligilllpvnalllkpaki.kfkeil 221
                 +a+ n   e+ ++++el ++     + ++ ++  + +++v a+ ++p ++ +++ i+
  KOO23424.1 209 MAAENSVGEVLLQQSELSTYASVGAMGMYGVVAYVPIFAVLAATPNPPALcNVSAIW 265
                 999999999999999999999999999999999999999999977665431455554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (412 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       603  (0.0336327); expected 358.6 (0.02)
Passed bias filter:                      367  (0.0204696); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.55u 0.26s 00:00:00.81 Elapsed: 00:00:00.41
# Mc/sec: 3022.27
//
Query:       KOO23425.1  [L=649]
Description: hypothetical protein Ctob_006092 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    0.00015   21.8   0.0    0.00042   20.4   0.0    1.7  1  DnaJ           DnaJ domain
     0.0013   18.7   1.2        8.5    6.6   0.0    5.0  5  NHL            NHL repeat
  ------ inclusion threshold ------
        4.3    5.6   7.1        8.7    4.6   0.4    2.2  2  Gly_reductase  Glycine/sarcosine/betaine reductase component 


Domain annotation for each model (and alignments):
>> DnaJ  DnaJ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.4   0.0     7e-08   0.00042       5      53 ..     591     640 ..     589     648 .. 0.84

  Alignments for each domain:
  == domain 1  score: 20.4 bits;  conditional E-value: 7e-08
                 HHTSSTTG-HHHHHHHHHHHHHHHSTTTSCCHH.HHHHHHHHHHHHHHHH CS
        DnaJ   5 iLgvskdasedeIkkaYrklalkyHPDknpkdp.eaeekFkeineAyevL 53 
                  Lgv++  s+de++k+ +kl + +HPD   + p + +++  +i++A++ L
  KOO23425.1 591 ALGVDERTSDDEVRKRVKKLLILMHPDFTINLPlKGTKQHIRIEAAFKKL 640
                 7**************************77667777777777777776654 PP

>> NHL  NHL repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.3   0.1     0.034   2.1e+02       1       9 [.      33      41 ..      33      42 .. 0.94
   2 ?   -1.1   0.0      0.39   2.3e+03      15      21 ..      55      61 ..      54      62 .. 0.85
   3 !    6.6   0.0    0.0014       8.5       3      27 ..      98     123 ..      96     124 .. 0.89
   4 ?    2.5   0.0     0.029   1.8e+02       6      28 .]     177     198 ..     172     198 .. 0.80
   5 ?    0.7   0.0      0.11   6.3e+02       1      10 [.     222     231 ..     222     235 .. 0.87

  Alignments for each domain:
  == domain 1  score: 2.3 bits;  conditional E-value: 0.034
                BSSEEEEEE CS
         NHL  1 fnyPhGvav 9 
                +++P+Gv+v
  KOO23425.1 33 LCSPAGVCV 41
                8*******9 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 0.39
                EEEEECC CS
         NHL 15 iyVaDse 21
                +yVaD++
  KOO23425.1 55 VYVADRY 61
                8****75 PP

  == domain 3  score: 6.6 bits;  conditional E-value: 0.0014
                 SEEEEEEE.TTTEEEEEECCCTEEEE CS
         NHL   3 yPhGvavd.snGdiyVaDsenhrvqv 27 
                 +P+ ++++ ++  ++V+D  nh+v v
  KOO23425.1  98 DPTELCLSlDGHTLFVTDQLNHSVLV 123
                 79999*************99999987 PP

  == domain 4  score: 2.5 bits;  conditional E-value: 0.029
                 EEEEETTTEEEEEECCCTEEEEE CS
         NHL   6 GvavdsnGdiyVaDsenhrvqvF 28 
                 G+a+  + +++Va+   hr+ vF
  KOO23425.1 177 GIAA-YGKQLFVAEQTAHRIAVF 198
                 6666.47899************9 PP

  == domain 5  score: 0.7 bits;  conditional E-value: 0.11
                 BSSEEEEEEE CS
         NHL   1 fnyPhGvavd 10 
                 f++P+G+a++
  KOO23425.1 222 FRRPRGLAIV 231
                 89******96 PP

>> Gly_reductase  Glycine/sarcosine/betaine reductase component B subunits
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.0   1.3    0.0023        14     145     191 ..     310     357 ..     294     363 .. 0.79
   2 ?    4.6   0.4    0.0015       8.7     140     182 ..     493     535 ..     487     540 .. 0.88

  Alignments for each domain:
  == domain 1  score: 4.0 bits;  conditional E-value: 0.0023
  Gly_reductase 145 ekheyekalrlaglkaaeylaeaakdlepdev.evyeleplkeraeky 191
                     ++e+e+a r a+l a++ +ae+a ++e+++     e e ++e+ ++ 
     KOO23425.1 310 RAEEREEAARSAALEASRLVAELAAEIEEKRRrAEMEAEAIEEERRER 357
                    4567889********************987651567888887776665 PP

  == domain 2  score: 4.6 bits;  conditional E-value: 0.0015
  Gly_reductase 140 lkeglekheyekalrlaglkaaeylaeaakdlepdevevyele 182
                    + e + k+ +eka   +  +aaeyl++  + +e+ e   ++ +
     KOO23425.1 493 IMERAAKKANEKAEAAVKARAAEYLGQKQRRTEAAERAAFQSQ 535
                    5677888999999999*******************99999875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (649 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2445  (0.136371); expected 358.6 (0.02)
Passed bias filter:                      609  (0.0339673); expected 358.6 (0.02)
Passed Vit filter:                       123  (0.00686039); expected 17.9 (0.001)
Passed Fwd filter:                        30  (0.00167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 1.15u 0.31s 00:00:01.46 Elapsed: 00:00:00.51
# Mc/sec: 3826.64
//
Query:       KOO23426.1  [L=460]
Description: NAD binding oxidoreductase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.3e-27   97.0   0.2    2.6e-27   96.0   0.2    1.5  1  GFO_IDH_MocA    Oxidoreductase family, NAD-binding Rossmann f
  ------ inclusion threshold ------
      0.025   14.6   0.0      0.044   13.8   0.0    1.3  1  Shikimate_DH    Shikimate / quinate 5-dehydrogenase
      0.034   14.6   0.0      0.063   13.7   0.0    1.4  1  Semialdhyde_dh  Semialdehyde dehydrogenase, NAD binding domai


Domain annotation for each model (and alignments):
>> GFO_IDH_MocA  Oxidoreductase family, NAD-binding Rossmann fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   96.0   0.2   4.4e-31   2.6e-27       1     120 []      42     161 ..      42     161 .. 0.96

  Alignments for each domain:
  == domain 1  score: 96.0 bits;  conditional E-value: 4.4e-31
                   EEEEEETTSHHHHHHHHHHHHTTTTEEEEEEECSSHHHHHHHHHHTTHEEESSHHHHHTCTTESEEEE-S-GGGHHHHHHHHHHTT-EEEEESSS-S CS
  GFO_IDH_MocA   1 lrvaiiGaGkigskhlrplnesqrleevvalldpdaeraeavaesfgveaysdleelladpeidavivatpngtheelakaaleagkhvllEKPlat 97 
                   +rva+iGa ki+s+ l    ++ ++ evva+  +++era+++ae++++  y ++e++ladpe+dav++a  ng h++ a aal+agkhvl+EKPl+ 
    KOO23426.1  42 VRVALIGAAKIASQGLLYPAQRVETVEVVAVAAREPERARKLAERWNIVKYGSYEAILADPEVDAVYIALINGVHYRWASAALKAGKHVLCEKPLTS 138
                   59*********999987777777888*********************************************************************** PP

                   SHHHHHHHHHHHHHHTS-EEEE- CS
  GFO_IDH_MocA  98 tveeakelvelaekkgklvsvgy 120
                   + +ea+el++la++++ +++ gy
    KOO23426.1 139 NAAEARELARLANEHSLVLMEGY 161
                   ******************99887 PP

>> Shikimate_DH  Shikimate / quinate 5-dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.0   7.4e-06     0.044      10      60 ..      39      91 ..      32     113 .. 0.77

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 7.4e-06
                  .TT-EEEEES-SHHHH..HHHHHHHCCT-CEEEEEESSHHHHHHHHHHHT.ET CS
  Shikimate_DH 10 lkekkvlliGaGemae..lvakhLlakgvkkvvvaNRtlerakelaeelkgee 60
                   ++ +v liGa ++a+  l+  +   ++v+ v+va R+ era++lae+ + ++
    KOO23426.1 39 QHRVRVALIGAAKIASqgLLYPAQRVETVEVVAVAAREPERARKLAERWNIVK 91
                  56789*********98224556666679*******************995553 PP

>> Semialdhyde_dh  Semialdehyde dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.0   1.1e-05     0.063       1      93 [.      43     130 ..      43     144 .. 0.87

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 1.1e-05
                     EEEEETTTSHHHHHHHHHHHCTSSEEEEEEEESTTTTTSBHHHHSGGGTTTECEBEEEGGGGGCTT-SEEEE-SCHHHHHHHHHHHHHTTSEE CS
  Semialdhyde_dh   1 kvaivGatGyvGqellrlLeehpevelvvllsssrsaGkklaeavkaleegkdlkvedvdeeelkevdivflalpagvskelapklaeagvkv 93 
                     +va++Ga     q ll   ++   ve+v++++++ +  +klae+ +++   k  ++e+  + +  evd v  al +gv+  +a ++++ag +v
      KOO23426.1  43 RVALIGAAKIASQGLLYPAQRVETVEVVAVAAREPERARKLAERWNIV---KYGSYEA--ILADPEVDAVYIALINGVHYRWASAALKAGKHV 130
                     79******************************************8843...3333444..2223689***********************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (460 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       400  (0.0223102); expected 358.6 (0.02)
Passed bias filter:                      314  (0.0175135); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.47u 0.25s 00:00:00.72 Elapsed: 00:00:00.39
# Mc/sec: 3493.80
//
Query:       KOO23427.1  [L=420]
Description: protease do-like 14-like protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    7.8e-31  108.0   5.9    8.3e-31  107.9   4.9    1.6  2  Trypsin_2      Trypsin-like peptidase domain
    5.6e-14   52.5   0.2    9.2e-14   51.8   0.2    1.3  1  Trypsin        Trypsin
    2.6e-12   46.9   0.0    9.2e-12   45.1   0.0    1.9  2  PDZ_2          PDZ domain
    4.1e-11   42.6   2.5    1.1e-10   41.1   0.2    2.8  3  PDZ_6          PDZ domain
    1.3e-06   28.6   0.0    3.6e-06   27.2   0.0    1.9  1  PDZ            PDZ domain
     0.0011   18.9   0.0     0.0025   17.7   0.0    1.6  1  Tricorn_PDZ    Tricorn protease PDZ domain
      0.002   16.8   1.5       0.16   10.6   0.1    2.3  2  Peptidase_S46  Peptidase S46
  ------ inclusion threshold ------
      0.019   15.2   0.0      0.041   14.2   0.0    1.4  1  GRASP55_65     GRASP55/65 PDZ-like domain


Domain annotation for each model (and alignments):
>> Trypsin_2  Trypsin-like peptidase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   0.0       7.2   1.6e+04     115     141 ..      44      68 ..      24      72 .. 0.59
   2 !  107.9   4.9   3.7e-34   8.3e-31       1     150 []     120     277 ..     120     277 .. 0.96

  Alignments for each domain:
  == domain 1  score: -3.4 bits;  conditional E-value: 7.2
   Trypsin_2 115 saasgegesflqtdaatspGsSGGplf 141
                  ++++++  +  t+aa+  G S G+l+
  KOO23427.1  44 PRRPIRHAARAITSAAV--GLSAGALV 68 
                 34555555555677777..77777766 PP

  == domain 2  score: 107.9 bits;  conditional E-value: 3.7e-34
   Trypsin_2   1 GsGflvgsdglilTnaHvvdsadgaavkaikkkveeagadgrevpakvvaadpelDlAllkvssderaglpplplgpsealkggepvyvvGyplggeks 99 
                 GsGf++++ g+ilTn+Hvv++a + +      +  ++  dg+e+++ v +adp +D+A++kv  ++  +lp++ lg+s+ l++ge v+++G p+g ++ 
  KOO23427.1 120 GSGFVIDPSGVILTNCHVVRDALTRSG---GGRCAVTLYDGTEFQGVVQHADPVSDIAIVKV--SATQPLPTVALGSSSGLRVGEFVVALGAPAGLTN- 212
                 9******************99999999...788999**************************..**********************************. PP

   Trypsin_2 100 gsvssGivsgvve...............sesaasgegesflqtdaatspGsSGGplfdsdGrvvGl 150
                  svs+Givs+v++                +s  +  g  ++qtdaa+++G+SGGpl++ +G+v+G+
  KOO23427.1 213 -SVSAGIVSSVDRtrsdlgldrrsliggQASNHRAAGMHYIQTDAAINQGNSGGPLLNLAGEVIGV 277
                 .9***********9999999999999887778888888888************************8 PP

>> Trypsin  Trypsin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.8   0.2   4.1e-17   9.2e-14       7     219 ..      98     299 ..      94     301 .. 0.70

  Alignments for each domain:
  == domain 1  score: 51.8 bits;  conditional E-value: 4.1e-17
                 TTTTSSTTEEEEEETTC..EEEEEEEEEETT.EEEEEGGGTTTGGGEEE.EESESBTTSCTTTEEEEEEEEEEEETTEBTTTTTTTEEEEEESSSSTSB CS
     Trypsin   7 aqkgsfpwqvslsvksg..khlCgGslisen.wvlTAaHCvsnasdvkv.vlgehnlkksegkeqklkvekvivhpnynpstldnDiallklkepvklg 101
                 a++ + p  v + v++g  +   +G++i+++  +lT+ H+v++  +++    g+ +++ ++g+    +++ v+   + +p     Dia++k+++     
  KOO23427.1  98 AAEKACPALVHIRVGNGfgQSSGSGFVIDPSgVILTNCHVVRD--ALTRsGGGRCAVTLYDGT----EFQGVVQ--HADPVS---DIAIVKVSAT---- 181
                 566778999999999999888899*******8999*******9..333313344889999997....5555444..478888...*********9.... PP

                 SSBHCCBBCSTTHTTSTTTEEEEEESSBSSTSSBSSBEEEEEEEEEEHHHHHHHTTTT............STTTEEEEESTTSSSBCTTTTTTSEEEET CS
     Trypsin 102 dtvrpiclpaassslpvgttclvsGwgrtkekgksdtlqevevpvvsretcksaykgk............vtenmlcagakeggkdacqGDSGGPlvcs 188
                 +   +++l + ss l vg+ +++ G +        +++  + v+ v+r + +  ++++               ++++++a     +++qG+SGGPl++ 
  KOO23427.1 182 QPLPTVALGS-SSGLRVGEFVVALGAPAG--LT--NSVSAGIVSSVDRTRSDLGLDRRsliggqasnhraAGMHYIQTDA-----AINQGNSGGPLLNL 270
                 8888888988.665777755555555554..33..444444554444432222222223444445555567777777777.....************** PP

                 TTEEEEEEEEESSSSCTTSEEEEEEGGGGHH CS
     Trypsin 189 dgelvGivswgkgcakgnrpgvytkvssyld 219
                  ge++G+++++ +  +g  +++++++++++ 
  KOO23427.1 271 AGEVIGVNTMKVSGMDG--IAFAVPIDEVKR 299
                 **********8444444..688888887775 PP

>> PDZ_2  PDZ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.0       1.6   3.7e+03      13      55 ..     192     236 ..     164     246 .. 0.56
   2 !   45.1   0.0   4.1e-15   9.2e-12       1      79 [.     313     412 ..     313     415 .. 0.95

  Alignments for each domain:
  == domain 1  score: -1.7 bits;  conditional E-value: 1.6
                 ..-EEEEE..E-TTSGGGGT.--TT-EEEEETTB--SSHHHHHHH CS
       PDZ_2  13 tggvlvvs..VkeggPaakaglkagDvilkvdgkkvksledlisl 55 
                 ++g+ v +  V  g Pa   +  +  ++ +vd ++ + + d +sl
  KOO23427.1 192 SSGLRVGEfvVALGAPAGLTNSVSAGIVSSVDRTRSDLGLDRRSL 236
                 344444444455555555554333336666666666555555555 PP

  == domain 2  score: 45.1 bits;  conditional E-value: 4.1e-15
                 ....XX------........................-EEEEEE-TTSGGGGT.--TT-EEEEETTB--SSHHHHHHHHHTS-TT-EEEEEEEETTEEEE CS
       PDZ_2   1 pylGvsvsdeed......................tggvlvvsVkeggPaakaglkagDvilkvdgkkvksledlislllkkkpGdtVkltvlRdgkkkt 77 
                 pylG+++++++                       + g+ v++V +++Pa++ag++agD+i+  +g+ + ++++l   l+  + G+ V+l+++R+ ++++
  KOO23427.1 313 PYLGIKFVELDAqtkrqleqssrasggtqppplpSAGLFVMHVAPDSPAQRAGVRAGDTIVGMGGRSLRTTKELLDGLA-DRVGQRVQLELQRYEQRLH 410
                 79*********99*************************************************************99886.68**************999 PP

                 EE CS
       PDZ_2  78 ve 79 
                 +e
  KOO23427.1 411 AE 412
                 87 PP

>> PDZ_6  PDZ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.0      0.75   1.7e+03      14      25 ..     193     204 ..     189     205 .. 0.83
   2 ?   -1.7   0.1       1.2   2.6e+03      22      55 ..     274     303 ..     273     303 .. 0.79
   3 !   41.1   0.2   5.1e-14   1.1e-10       1      56 []     351     404 ..     351     404 .. 0.97

  Alignments for each domain:
  == domain 1  score: -1.0 bits;  conditional E-value: 0.75
       PDZ_6  14 AGlrvGDiilsv 25 
                  GlrvG  ++++
  KOO23427.1 193 SGLRVGEFVVAL 204
                 69*****99986 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 1.2
       PDZ_6  22 ilsvNGqpveglsladvaallrgsagesvvlvvr 55 
                 ++ vN   v    ++ +a ++  + +e  ++vv+
  KOO23427.1 274 VIGVNTMKV--SGMDGIAFAV--PIDEVKRVVVQ 303
                 678999999..9999998888..67777777775 PP

  == domain 3  score: 41.1 bits;  conditional E-value: 5.1e-14
       PDZ_6   1 vVtaVdpgsPAdrAGlrvGDiilsvNGqpveglsladvaallrgsagesvvlvvrr 56 
                 +V  V p+sPA rAG+r+GD+i+  +G+++  ++++++ + l+ ++g++v l+++r
  KOO23427.1 351 FVMHVAPDSPAQRAGVRAGDTIVGMGGRSL--RTTKELLDGLADRVGQRVQLELQR 404
                 57789*************************..**********************98 PP

>> PDZ  PDZ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.2   0.0   1.6e-09   3.6e-06      23      63 ..     337     385 ..     303     403 .. 0.77

  Alignments for each domain:
  == domain 1  score: 27.2 bits;  conditional E-value: 1.6e-09
                 S........SSSSEEEEEECTTSHHHHHTSSTTEEEEEETTEETTTSHH CS
         PDZ  23 r........gdkgifvsevlpggaaeadglkvGDkIlsvNgvdvenvsh 63 
                 +         + g+fv +v p+++a+++g+++GD I++++g+++++  +
  KOO23427.1 337 SggtqppplPSAGLFVMHVAPDSPAQRAGVRAGDTIVGMGGRSLRTTKE 385
                 0445556667789******************************998744 PP

>> Tricorn_PDZ  Tricorn protease PDZ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.7   0.0   1.1e-06    0.0025      30      81 ..     358     407 ..     353     413 .. 0.91

  Alignments for each domain:
  == domain 1  score: 17.7 bits;  conditional E-value: 1.1e-06
                  B-GGGGGS---.TT-EEEEETTEE-BTTB-HHHHHHTTTTSEEEEEEE-STT CS
  Tricorn_PDZ  30 rSPLaepGvnvreGdlilavdgepvskekgiaelLvgkagkeveLtvkrkdg 81 
                   SP ++ Gv+  +Gd+i+   g++++++k++   L+++ g+ v+L+++r ++
   KOO23427.1 358 DSPAQRAGVR--AGDTIVGMGGRSLRTTKELLDGLADRVGQRVQLELQRYEQ 407
                  6899999999..8**********************************99775 PP

>> Peptidase_S46  Peptidase S46
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.2   0.1    0.0031       6.8      48      72 ..     119     143 ..      92     147 .. 0.89
   2 !   10.6   0.1   7.2e-05      0.16     627     651 ..     254     278 ..     233     283 .. 0.87

  Alignments for each domain:
  == domain 1  score: 5.2 bits;  conditional E-value: 0.0031
                    TEE-EE-STT-EEEE-HHHHHHHHH CS
  Peptidase_S46  48 gCtasfVSpeGLvlTNHHCaygaiq 72 
                      ++ ++ p+G +lTN H++++a++
     KOO23427.1 119 SGSGFVIDPSGVILTNCHVVRDALT 143
                    56899****************9986 PP

  == domain 2  score: 10.6 bits;  conditional E-value: 7.2e-05
                    ES----TT-TT-EEE-TTS-EEEEE CS
  Peptidase_S46 627 stnDitGGNSGSPvlngkgelvGla 651
                    +++ i  GNSG P+ln  ge++G++
     KOO23427.1 254 TDAAINQGNSGGPLLNLAGEVIGVN 278
                    6677889****************97 PP

>> GRASP55_65  GRASP55/65 PDZ-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   0.0   1.8e-05     0.041      47      97 ..     352     401 ..     344     417 .. 0.83

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 1.8e-05
                 EEEEBTTSHHHHHT--TTTEEEEEEE.SSSSSTSCSHHHHTTTSSS-EEEE CS
  GRASP55_65  47 vldvlegsPaakagLvpksDYiiGldkgllkgeedlselveaheekelkLl 97 
                 v++v ++sPa++ag+    D i+G+    l+  ++l + + +++ + ++L 
  KOO23427.1 352 VMHVAPDSPAQRAGVR-AGDTIVGMGGRSLRTTKELLDGLADRVGQRVQLE 401
                 899***********86.57*****************999999999966553 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (420 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       490  (0.02733); expected 358.6 (0.02)
Passed bias filter:                      408  (0.0227564); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.46u 0.22s 00:00:00.68 Elapsed: 00:00:00.35
# Mc/sec: 3574.17
//
Query:       KOO23428.1  [L=209]
Description: glycosyltransferase family 77 protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.2e-24   87.5   0.0    1.6e-24   87.1   0.0    1.1  1  Nucleotid_trans  Nucleotide-diphospho-sugar transferase


Domain annotation for each model (and alignments):
>> Nucleotid_trans  Nucleotide-diphospho-sugar transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   87.1   0.0   8.7e-29   1.6e-24       3     155 ..      49     203 ..      47     207 .. 0.92

  Alignments for each domain:
  == domain 1  score: 87.1 bits;  conditional E-value: 8.7e-29
  Nucleotid_trans   3 lenllvvAlDeealerckelgvpvlyltskgkdsakkdeefksktykkmswrkvrlllellklGynvllsDvDvvWlrnpfpll.kyedaDvlv 95 
                      l+n++v+A D++al+++ e gvp++ l+       +++  ++s +++ ++ +kv+l+ ++l+ G + +l+DvD+  lr pf+++ +y++a +l+
       KOO23428.1  49 LTNWMVGATDATALRALLETGVPCFDLHTS---LPEGEWAWGSANFHSLGPTKVKLVEQVLRWGLELVLTDVDALVLREPFEYMdRYPGASFLT 139
                      89*********************8888886...666899*********************************************999******* PP

  Nucleotid_trans  96 ssDsldgttadelknli.....NsGfffvrateatkallkkwaeelase.sglwDqdvfnlllreg 155
                       sD+l++ttad+  +       N+G  f+r++   + l++ w  ++ s+ +g wDq vfn+l ++g
       KOO23428.1 140 TSDHLSNTTADDGLEVRadsayNIGYLFFRPSA--LPLVDAWLAKVLSDpTGSWDQGVFNDLAKSG 203
                      ********99876655589999********986..56************999*********98876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (209 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       300  (0.0167327); expected 358.6 (0.02)
Passed bias filter:                      278  (0.0155056); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.22s 00:00:00.60 Elapsed: 00:00:00.35
# Mc/sec: 1764.37
//
Query:       KOO23429.1  [L=432]
Description: hypothetical protein Ctob_011092, partial [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (432 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       381  (0.0212505); expected 358.6 (0.02)
Passed bias filter:                      318  (0.0177366); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.47u 0.25s 00:00:00.72 Elapsed: 00:00:00.42
# Mc/sec: 3087.26
//
Query:       KOO23430.1  [L=386]
Description: hypothetical protein Ctob_011094 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.3e-12   47.9   5.9    1.3e-12   47.9   5.9    2.1  2  Pinin_SDK_memA  pinin/SDK/memA/ protein conserved region
  ------ inclusion threshold ------
       0.36   11.0   3.5        7.5    6.7   0.4    3.2  3  TRPM_tetra      Tetramerisation domain of TRPM
       0.99    8.9  14.7        2.1    7.8  14.7    1.5  1  DUF963          Schizosaccharomyces pombe repeat of unknown f
        2.2    7.9   9.8       0.35   10.4   3.6    2.3  2  Snf7            Snf7
        4.5    7.6  11.8         16    5.7   0.6    3.2  2  Seryl_tRNA_N    Seryl-tRNA synthetase N-terminal domain


Domain annotation for each model (and alignments):
>> Pinin_SDK_memA  pinin/SDK/memA/ protein conserved region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.3   0.3       0.2     7e+02      76      95 ..      56      71 ..      25      96 .. 0.59
   2 !   47.9   5.9   3.6e-16   1.3e-12       3     116 ..     240     350 ..     238     361 .. 0.68

  Alignments for each domain:
  == domain 1  score: 0.3 bits;  conditional E-value: 0.2
  Pinin_SDK_memA 76 raleeklelkelmetwhenk 95
                    + le+++     +++++ n 
      KOO23430.1 56 KSLEQEA----RQQERSVNA 71
                    2222222....223333333 PP

  == domain 2  score: 47.9 bits;  conditional E-value: 3.6e-16
  Pinin_SDK_memA   3 ekkRnrRlfgaLlgtLqkfkkeeekqk.ekeerraeiekrleekakeekeeleerkrekreeleeerraeqkelral....eeklelkelmetwh 92 
                     + +Rnr+++g+L+gtL+++++e ++   +++++ + ++ +l+  + +  e+     re+  ++   +++++++l  +    + +l     + ++ 
      KOO23430.1 240 TEQRNRKMLGMLVGTLKRAREEVSALGsAQQHKLQAVDAKLRSDRTQMIEAA----RERTCAQLLTTKRRHEDLASElaelDARL----RQVQKL 326
                     789*******************999986667777777777777777777777....66655544445555555522211113333....444444 PP

  Pinin_SDK_memA  93 enkkalanflrTktePpiyYlPwk 116
                       +  la  +rT+t Pp+yYlP+ 
      KOO23430.1 327 LDQADLAPRMRTETAPPLYYLPKP 350
                     5566667779************84 PP

>> TRPM_tetra  Tetramerisation domain of TRPM
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.0      0.51   1.8e+03      32      44 ..      48      60 ..      39      67 .. 0.80
   2 ?    3.0   0.0     0.032   1.1e+02      19      40 ..     260     281 ..     258     282 .. 0.88
   3 ?    6.7   0.4    0.0021       7.5      30      49 ..     311     330 ..     284     332 .. 0.86

  Alignments for each domain:
  == domain 1  score: -0.9 bits;  conditional E-value: 0.51
  TRPM_tetra 32 LqsldfrLgkLed 44
                + ++++rL+ Le 
  KOO23430.1 48 VYEVELRLKSLEQ 60
                67899***99985 PP

  == domain 2  score: 3.0 bits;  conditional E-value: 0.032
  TRPM_tetra  19 eevneKenlikaSLqsldfrLg 40 
                 eev+   +++++ Lq++d +L+
  KOO23430.1 260 EEVSALGSAQQHKLQAVDAKLR 281
                 677788889**********997 PP

  == domain 3  score: 6.7 bits;  conditional E-value: 0.0021
  TRPM_tetra  30 aSLqsldfrLgkLedlsalt 49 
                 + L +ld rL++++ l +++
  KOO23430.1 311 SELAELDARLRQVQKLLDQA 330
                 6699***********99885 PP

>> DUF963  Schizosaccharomyces pombe repeat of unknown function (DUF963)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.8  14.7   0.00059       2.1       3      35 ..     177     209 ..     176     210 .. 0.95

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 0.00059
      DUF963   3 SstplnsSTPvtsSTpVnsSTPItsSsvvnsST 35 
                 S+t + s T v+s T+V+s T + s ++v+s T
  KOO23430.1 177 STTAVESTTAVESTTAVESTTAVESTTAVESTT 209
                 8999**************************988 PP

>> Snf7  Snf7
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.5   0.4      0.11     4e+02       7      48 ..      38      79 ..      24      98 .. 0.68
   2 ?   10.4   3.6   9.9e-05      0.35      15      77 ..     268     330 ..     253     338 .. 0.80

  Alignments for each domain:
  == domain 1  score: 0.5 bits;  conditional E-value: 0.11
                HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-HHHHHHHHH CS
        Snf7  7 rkaerkldkkqeslekkikkleaelkklakkgnkdralllLK 48
                 ka+  + ++  ++e ++k le+e+++  ++ n  +a + L+
  KOO23430.1 38 AKAKTIIGNEVYEVELRLKSLEQEARQQERSVNAIKAGNRLR 79
                555666666666677777777777777777666655555555 PP

  == domain 2  score: 10.4 bits;  conditional E-value: 9.9e-05
                 HHHHHHHHHHHHHHHHHHHHHCTT-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
        Snf7  15 kkqeslekkikkleaelkklakkgnkdralllLKqkkryekqldqldnqlanleqvslaienl 77 
                  +q +l+   +kl+++  ++++  +++++ +lL  k+r+e + ++l +  a+l qv+  ++++
  KOO23430.1 268 AQQHKLQAVDAKLRSDRTQMIEAARERTCAQLLTTKRRHEDLASELAELDARLRQVQKLLDQA 330
                 3566677777777777799999999******************************99877766 PP

>> Seryl_tRNA_N  Seryl-tRNA synthetase N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.7   0.6    0.0046        16      45      94 ..      23      73 ..      20      76 .. 0.75
   2 ?    2.5   0.4     0.048   1.7e+02      43      97 ..     236     287 ..     230     293 .. 0.69

  Alignments for each domain:
  == domain 1  score: 5.7 bits;  conditional E-value: 0.0046
                  HHHHHHHHHHHHHHCCCCCCTT.S-TCCCCCCCHHHHHHHHHHHHHHHHHH CS
  Seryl_tRNA_N 45 leelqaerNelskeIgkakkkk.edaeeliaevkelkeelkaleaelkele 94
                  ++e++a+ N+l+++++kak    ++  e+  + k+l +e  + e  +++++
    KOO23430.1 23 VDEVKARLNRLTQAFAKAKTIIgNEVYEVELRLKSLEQEARQQERSVNAIK 73
                  899***************987556666666666666666666666666665 PP

  == domain 2  score: 2.5 bits;  conditional E-value: 0.048
                   HHHHHHHHHHHHHHHHCCCCCCTTS-TCCCCCCCHHHHHHHHHHHHHHHHHHHHH CS
  Seryl_tRNA_N  43 veleelqaerNelskeIgkakkkkedaeeliaevkelkeelkaleaelkeleael 97 
                   ++    q++r+ l+  +g +k++ e+ +   a +++ + +l+a++a+l+  ++++
    KOO23430.1 236 TDSTTEQRNRKMLGMLVGTLKRAREEVS---ALGSAQQHKLQAVDAKLRSDRTQM 287
                   5555668889999999999999875555...555666677777777777666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (386 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1474  (0.0822132); expected 358.6 (0.02)
Passed bias filter:                      529  (0.0295053); expected 358.6 (0.02)
Passed Vit filter:                        48  (0.00267723); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.52u 0.27s 00:00:00.79 Elapsed: 00:00:00.40
# Mc/sec: 2889.26
//
Query:       KOO23431.1  [L=111]
Description: hypothetical protein Ctob_011098, partial [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    0.00087   19.7   1.3       0.39   11.2   0.1    2.2  2  RCDG1     Renal cancer differentiation gene 1 protein


Domain annotation for each model (and alignments):
>> RCDG1  Renal cancer differentiation gene 1 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.8   0.1   0.00024       4.2      10      35 ..       5      30 ..       2      43 .. 0.86
   2 !   11.2   0.1   2.2e-05      0.39       9      35 ..      49      75 ..      34      79 .. 0.88

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 0.00024
       RCDG1 10 pPPPssPssraaasssspelPvslgw 35
                p PPss s+++a      ++P +lg+
  KOO23431.1  5 PGPPSSQSASDAQLHVFVQVPRVLGG 30
                6799*****************99987 PP

  == domain 2  score: 11.2 bits;  conditional E-value: 2.2e-05
       RCDG1  9 PpPPPssPssraaasssspelPvslgw 35
                 p PPss s+++a      ++P +lg+
  KOO23431.1 49 EPGPPSSQSASDAKLHEFVQMPGILGG 75
                56789********************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (111 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       136  (0.00758548); expected 358.6 (0.02)
Passed bias filter:                       92  (0.00513135); expected 358.6 (0.02)
Passed Vit filter:                         2  (0.000111551); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.34u 0.25s 00:00:00.59 Elapsed: 00:00:00.39
# Mc/sec: 851.18
//
Query:       KOO23432.1  [L=186]
Description: hypothetical protein Ctob_011095 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.16   12.2   0.0       0.35   11.1   0.0    1.6  1  Coat_F    Coat F domain


Domain annotation for each model (and alignments):
>> Coat_F  Coat F domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   1.9e-05      0.35       9      34 ..       3      28 ..       1      31 [. 0.94

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 1.9e-05
      Coat_F  9 lLsteKsaarnyataitEasnpelRq 34
                +L t+ + a+ ++ta++ +s+p++R+
  KOO23432.1  3 VLITARAHASVLTTAALPSSTPQVRE 28
                6999*********************7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (186 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       266  (0.0148363); expected 358.6 (0.02)
Passed bias filter:                      218  (0.0121591); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.24s 00:00:00.61 Elapsed: 00:00:00.40
# Mc/sec: 1408.83
//
Query:       KOO23433.1  [L=251]
Description: mitochondrial carrier family [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.7e-15   56.1   0.6    1.6e-08   34.4   0.0    3.2  3  Mito_carr  Mitochondrial carrier protein
  ------ inclusion threshold ------
      0.066   12.7   0.1      0.093   12.2   0.1    1.1  1  CcmB       CcmB protein


Domain annotation for each model (and alignments):
>> Mito_carr  Mitochondrial carrier protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.9   0.1   0.00016       1.4      62      94 ..      27      59 ..      11      61 .. 0.91
   2 !    9.6   0.1   9.5e-05      0.85       4      71 ..      67     141 ..      64     149 .. 0.76
   3 !   34.4   0.0   1.7e-12   1.6e-08       8      78 ..     162     229 ..     158     236 .. 0.92

  Alignments for each domain:
  == domain 1  score: 8.9 bits;  conditional E-value: 0.00016
                HGGGTTHHHHHHHHHHHHHHHHHHHHHHHHHHC CS
   Mito_carr 62 rglyrGllpnllrvapasalkfvlyetlkrlll 94
                r lyrG+ +n l +a   + +f+l+  +k+ l+
  KOO23433.1 27 RVLYRGYFANTLNNAGCVMTQFFLNGAIKNALT 59
                67***************************9885 PP

  == domain 2  score: 9.6 bits;  conditional E-value: 9.5e-05
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSTTTSCSS......HHHHHHHHHHHHHH.HGGGTTHHHH CS
   Mito_carr   4 svlkellaGglagavatlvttPldvvKtrlqtqkksskksksaa......ildvlkkiykeeGl.rglyrGllpn 71 
                 s  +++ a++ +g+++++v+ Pl+++ ++ q++++   ++  +       +++ +  ++  eG+  g y G++p 
  KOO23433.1  67 SNSEKIGAAVGSGVLSSVVASPLELMMVQQQVKGTGLLETAVSLikggpvLARGMIGMMGREGIfCGCYLGIMPV 141
                 56677889999*********************9998777655546777776666666666666646777777775 PP

  == domain 3  score: 34.4 bits;  conditional E-value: 1.7e-12
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSTTTSCSSHHHHHHHHHHHHHHHGGGTTHHHHHHHHHHH CS
   Mito_carr   8 ellaGglagavatlvttPldvvKtrlqtqkksskksksaaildvlkkiykeeGlrglyrGllpnllrvapa 78 
                 +l+a  +ag +++++ +P d+ Kt lq + + +k+++    ++++++++ e G+++l+ G+  +++r++ a
  KOO23433.1 162 RLFATFVAGPIGSFCSHPPDTFKTCLQGDIEGNKYKG---YASTYRTLVAERGITSLWAGMPWRVFRQFCA 229
                 688999**************************99977...899************************9954 PP

>> CcmB  CcmB protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.1     1e-05     0.093      72     145 ..      49     126 ..      24     128 .. 0.84

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 1e-05
        CcmB  72 fedGsLellllapvplellvlaKalAhwlltglplvllapllalllnleaaalgll..altLllGtpals..llgavg 145
                 f +G++ + l+  vp el    K+ A      l  v+++pl  ++++ +++++gll  a++L+ G p+l+  ++g++g
  KOO23433.1  49 FLNGAIKNALTGGVPRELSNSEKIGAAVGSGVLSSVVASPLELMMVQQQVKGTGLLetAVSLIKGGPVLArgMIGMMG 126
                 5689999999999*************9999999*************999998888633799******99533777776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (251 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       313  (0.0174578); expected 358.6 (0.02)
Passed bias filter:                      279  (0.0155614); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.44u 0.25s 00:00:00.69 Elapsed: 00:00:00.42
# Mc/sec: 1780.02
//
Query:       KOO23434.1  [L=977]
Description: hypothetical protein Ctob_010326 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (977 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1125  (0.0627475); expected 358.6 (0.02)
Passed bias filter:                      597  (0.033298); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.73u 0.26s 00:00:00.99 Elapsed: 00:00:00.41
# Mc/sec: 7103.34
//
Query:       KOO23435.1  [L=542]
Description: suppressor of amib protein 16 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
     0.0017   18.3   0.0        3.6    7.7   0.0    4.8  6  Atx10homo_assoc  Spinocerebellar ataxia type 10 protein domai
     0.0075   16.3   0.5       0.47   10.6   0.0    3.3  3  Arm              Armadillo/beta-catenin-like repeat
  ------ inclusion threshold ------
      0.054   12.6   6.8      0.084   11.9   6.8    1.3  1  Atg14            Vacuolar sorting 38 and autophagy-related su
      0.067   13.7   2.8       0.27   11.7   2.8    2.1  1  CRR7             Protein CHLORORESPIRATORY REDUCTION 7
       0.13   12.6   3.6       0.34   11.3   3.6    1.7  1  HBS1_N           HBS1 N-terminus
       0.13   12.3  15.9      0.037   14.1  11.1    2.3  3  ADIP             Afadin- and alpha -actinin-Binding
        0.2   10.5  14.4       0.33    9.8  14.4    1.3  1  Spc7             Spc7 kinetochore protein
       0.46   10.7  10.5       0.14   12.4   7.5    1.6  2  Fib_alpha        Fibrinogen alpha/beta chain family
        0.5   10.6  16.3        1.6    8.9  15.3    2.1  2  Jnk-SapK_ap_N    JNK_SAPK-associated protein-1
       0.79    9.1  17.2        1.2    8.5  17.2    1.2  1  HMMR_N           Hyaluronan mediated motility receptor N-term
        1.1    8.8  10.4        1.7    8.2  10.4    1.2  1  Exonuc_VII_L     Exonuclease VII, large subunit
        1.3    9.1   6.5        1.5    8.9   5.7    1.5  1  MCU              Mitochondrial calcium uniporter
        1.3    9.2  13.9        1.9    8.8  11.8    2.3  1  TMF_TATA_bd      TATA element modulatory factor 1 TATA bindin
        1.6    8.9  20.3        3.5    7.8  20.3    1.6  1  ATG16            Autophagy protein 16 (ATG16)
        3.3    6.1   9.5        4.6    5.7   9.5    1.2  1  Macoilin         Macoilin family
        5.7    7.0  26.4         25    4.9   1.0    2.4  2  TPR_MLP1_2       TPR/MLP1/MLP2-like protein
          9    6.5  17.8       0.41   10.9   0.6    3.4  3  Cnn_1N           Centrosomin N-terminal motif 1
        9.6    6.9  13.2         10    6.8   2.3    3.5  3  SlyX             SlyX
         10    6.6  14.5    1.3e+02    3.0  13.8    2.4  2  CENP-H           Centromere protein H (CENP-H)


Domain annotation for each model (and alignments):
>> Atx10homo_assoc  Spinocerebellar ataxia type 10 protein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.1   0.0      0.21     2e+02      31      59 ..     193     221 ..     179     226 .. 0.84
   2 ?   -0.3   0.0       1.2   1.1e+03      21      39 ..     229     247 ..     222     258 .. 0.84
   3 !    7.7   0.0    0.0038       3.6       9      58 ..     261     310 ..     253     315 .. 0.90
   4 ?    0.2   0.0      0.79   7.5e+02      26      56 ..     416     446 ..     410     457 .. 0.85
   5 ?   -1.5   0.0       2.8   2.6e+03      21      58 ..     456     493 ..     451     503 .. 0.81
   6 ?   -2.7   0.0       6.5   6.2e+03      28      58 ..     506     536 ..     495     538 .. 0.76

  Alignments for each domain:
  == domain 1  score: 2.1 bits;  conditional E-value: 0.21
  Atx10homo_assoc  31 liLsqcniDdnnPfirewailairnLleg 59 
                      ++L++++++  +P++ e+a++a++++l +
       KOO23435.1 193 MLLEAIRLHLAKPVLVEQAMVAMQYVLSE 221
                      357889999**************999876 PP

  == domain 2  score: -0.3 bits;  conditional E-value: 1.2
  Atx10homo_assoc  21 dkvreldgleliLsqcniD 39 
                      + +r  +g+ +iL++++ +
       KOO23435.1 229 ELIRTRGGIDIILDAMRRH 247
                      6799*********998865 PP

  == domain 3  score: 7.7 bits;  conditional E-value: 0.0038
  Atx10homo_assoc   9 lgnlvyknkevqdkvreldgleliLsqcniDdnnPfirewailairnLle 58 
                      l  l++ ++ ++d v + +g++li+  ++ ++ +P ++  a  a+r++l 
       KOO23435.1 261 LWKLAFADPPTRDIVIRSEGIALIMAGMQRHHVHPRLQYNACGALRQMLV 310
                      56788999999***********************************9986 PP

  == domain 4  score: 0.2 bits;  conditional E-value: 0.79
  Atx10homo_assoc  26 ldgleliLsqcniDdnnPfirewailairnL 56 
                       ++l+l L+++  + + P+++e++  ++ n+
       KOO23435.1 416 VQALKLTLQSMAAHPETPLVQEYGCGTLLNV 446
                      57899*****************998776665 PP

  == domain 5  score: -1.5 bits;  conditional E-value: 2.8
  Atx10homo_assoc  21 dkvreldgleliLsqcniDdnnPfirewailairnLle 58 
                      +k+  + g+++iL++++++     ++ ++   i+ L e
       KOO23435.1 456 QKLYGEAGVPTILEAMRTHPMATGVQIHSCALIKELAE 493
                      56677889999**9999998888888888888888866 PP

  == domain 6  score: -2.7 bits;  conditional E-value: 6.5
  Atx10homo_assoc  28 gleliLsqcniDdnnPfirewailairnLle 58 
                      g +l+L +   ++ n+ +  +a+ a+r+L e
       KOO23435.1 506 GRSLLLAALHNHQYNDELLTRATEALRYLPE 536
                      5567788888888888888889999998865 PP

>> Arm  Armadillo/beta-catenin-like repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.2   0.0      0.44   4.2e+02      12      40 ..     235     265 ..     230     266 .. 0.85
   2 !   10.6   0.0    0.0005      0.47       1      38 [.     268     307 ..     268     310 .. 0.92
   3 ?   -0.2   0.1       1.2   1.1e+03      23      39 ..     518     534 ..     508     534 .. 0.77

  Alignments for each domain:
  == domain 1  score: 1.2 bits;  conditional E-value: 0.44
                 THHHHHHHHTT..TSSHHHHHHHHHHHHHHT CS
         Arm  12 GavppLvrLLs..sedeevqeeAawALsNLa 40 
                 G++++ ++ ++   e  e+q  A++ L+ La
  KOO23435.1 235 GGIDIILDAMRrhAEIAELQSSACGLLWKLA 265
                 777777888888888899**********997 PP

  == domain 2  score: 10.6 bits;  conditional E-value: 0.0005
                 SHHHHHHHHHTTHHHHHHHHTT..TSSHHHHHHHHHHHHH CS
         Arm   1 nsenkdavieaGavppLvrLLs..sedeevqeeAawALsN 38 
                 +++ +d vi++ ++   ++ ++  + ++++q +A++AL+ 
  KOO23435.1 268 DPPTRDIVIRSEGIALIMAGMQrhHVHPRLQYNACGALRQ 307
                 5778999*******************************96 PP

  == domain 3  score: -0.2 bits;  conditional E-value: 1.2
                 TSSHHHHHHHHHHHHHH CS
         Arm  23 sedeevqeeAawALsNL 39 
                   ++e+++ A+ AL++L
  KOO23435.1 518 QYNDELLTRATEALRYL 534
                 5588999********98 PP

>> Atg14  Vacuolar sorting 38 and autophagy-related subunit 14
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   6.8     9e-05     0.084      73     175 ..      24     133 ..      11     170 .. 0.81

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 9e-05
       Atg14  73 ksliadlrerlqelkdklsqlkkeieekkkklaklsdklk...........kRrsdleslqneleerrkkqiaklqdaikrieqklsslssktlesrss 160
                   +ia l+e+l++++++ ++     +  k +lak++++ k           ++++d    +  leer +++++   ++ kr  q+l++l+ ++ e++s 
  KOO23435.1  24 LLKIAALEEKLARIQHDADSAVGFAATSKDQLAKQKKDQKdivdylsmqlaQKKED----YAALEERYAQLVQAKEESEKRLNQMLEDLKAELKETQSK 118
                 56789999*******************************99*99999999988888....777777777777777777778888888888888888888 PP

       Atg14 161 lcselaklyglrrts 175
                 l+   a++++l+   
  KOO23435.1 119 LAASEAQCAQLTAQV 133
                 888888877777644 PP

>> CRR7  Protein CHLORORESPIRATORY REDUCTION 7
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   2.8   0.00029      0.27       4      68 ..      72     136 ..      69     142 .. 0.92

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.00029
                 --S-----EEEEESSS-SEEE-HHHHHHHHHHHHHH-TTTS-HHHHH---HHHHHHHHHHH---E CS
        CRR7   4 slmyqedtyVvLepnqpEqfltaeellekLkelLekeqdelprdlaklesleeqaqyLldtaceL 68 
                 +l +++++y  Le+   + +  +ee +++L+++Le+ + el +  +kl   e+q  +L  ++ e+
  KOO23435.1  72 QLAQKKEDYAALEERYAQLVQAKEESEKRLNQMLEDLKAELKETQSKLAASEAQCAQLTAQVIEI 136
                 6788999********9999999999*********************************9999886 PP

>> HBS1_N  HBS1 N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   3.6   0.00036      0.34       7      49 ..      78     125 ..      61     128 .. 0.78

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00036
      HBS1_N   7 ddeeeeeee......eLsdedqarLrscldevrevLgeeaskvtvtekq 49 
                 +d++  e e      +  +e + rL+++l+ ++++L+e++sk +++e+q
  KOO23435.1  78 EDYAALE-EryaqlvQAKEESEKRLNQMLEDLKAELKETQSKLAASEAQ 125
                 3333333.24788999**************************9999887 PP

>> ADIP  Afadin- and alpha -actinin-Binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.8   1.6     0.029        28      89     152 .]      26      89 ..      20      89 .. 0.91
   2 ?   14.1  11.1     4e-05     0.037      24     104 ..      55     133 ..      42     147 .. 0.82
   3 ?   -1.4   0.1       2.4   2.2e+03      70      91 ..     151     172 ..     138     181 .. 0.72

  Alignments for each domain:
  == domain 1  score: 4.8 bits;  conditional E-value: 0.029
        ADIP  89 elalvqakerqlekklktleqklknekeelqrlknalqqiktqyahelkkkdreiekLkeklke 152
                 ++a++++k++ ++ +  ++   + + k++l+++k++ ++i   ++  l +k   ++ L e++++
  KOO23435.1  26 KIAALEEKLARIQHDADSAVGFAATSKDQLAKQKKDQKDIVDYLSMQLAQKKEDYAALEERYAQ 89 
                 788999999999999999999********************99999999999999999999875 PP

  == domain 2  score: 14.1 bits;  conditional E-value: 4e-05
        ADIP  24 dtatekveeniaaiinviysLlqardrdleqres.lnetirkleaeierlqskierlktqleqlerelalvqakerqlekkl 104
                      k++++ + i++ +   l+++++d ++ e+ +++ ++ +e + +rl++  e lk++l++++++la+++a+++ql++++
  KOO23435.1  55 L---AKQKKDQKDIVDYLSMQLAQKKEDYAALEErYAQLVQAKEESEKRLNQMLEDLKAELKETQSKLAASEAQCAQLTAQV 133
                 3...34789999999999999999999988766516677788899999*******************************997 PP

  == domain 3  score: -1.4 bits;  conditional E-value: 2.4
        ADIP  70 erlqskierlktqleqlerela 91 
                 + l+++ er k+ l+q+e+ l+
  KOO23435.1 151 ATLTAELERYKAMLKQSEQHLT 172
                 5667777777777777777776 PP

>> Spc7  Spc7 kinetochore protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8  14.4   0.00035      0.33     146     234 ..      43     138 ..      30     173 .. 0.60

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.00035
        Spc7 146 enlegleedkelLekqeeeldellpeleeeka.......eleeeleklqeaaeelesidkeeLeelreelaelkaeieekkkelaelqeqleelee 234
                 + +    + k++L+kq++  +++++ l+ + a       +lee++++l +a+ee e+  ++ Le l+ el+e ++++++ +++ a+l++q+ e+ +
  KOO23435.1  43 SAVGFAATSKDQLAKQKKDQKDIVDYLSMQLAqkkedyaALEERYAQLVQAKEESEKRLNQMLEDLKAELKETQSKLAASEAQCAQLTAQVIEIGQ 138
                 555555566677777776666666655544441111222777777777777777777777778888888888888888888888887777665544 PP

>> Fib_alpha  Fibrinogen alpha/beta chain family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   7.5   0.00015      0.14      30     134 ..      20     128 ..      15     136 .. 0.85
   2 ?   -3.0   0.0       7.8   7.4e+03      86     107 ..     153     174 ..     149     176 .. 0.69

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 0.00015
                 CCCCCHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH....HHHHHHHHHHHHHCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH CS
   Fib_alpha  30 ekdvkkdlekleneleeisnstkeaeelvkeikdslrekqkskkdn....dnvikksskeleeeilrlketidaqesnirvLqnvlesneqkiqkLeqd 124
                 e+++  +++ le++l++i++   +a     + kd+l++++k +kd     +  + + +++     +r+ + ++a+e++ + L ++le+++ ++++ +++
  KOO23435.1  20 ESTLLLKIAALEEKLARIQHDADSAVGFAATSKDQLAKQKKDQKDIvdylSMQLAQKKEDYAALEERYAQLVQAKEESEKRLNQMLEDLKAELKETQSK 118
                 66777799******************************999999965333444555555555566788899**************************** PP

                 HHHHHHHTTS CS
   Fib_alpha 125 idqkerkCke 134
                  ++ e++C +
  KOO23435.1 119 LAASEAQCAQ 128
                 ********86 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 7.8
                 HHHCCCHHHHHHHCCHHHHHHH CS
   Fib_alpha  86 leeeilrlketidaqesnirvL 107
                 l  e +r+k+ +++ e+++ vL
  KOO23435.1 153 LTAELERYKAMLKQSEQHLTVL 174
                 5566677777777777777776 PP

>> Jnk-SapK_ap_N  JNK_SAPK-associated protein-1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.3   4.0    0.0027       2.6      79     147 ..      26      94 ..      17      97 .. 0.89
   2 ?    8.9  15.3    0.0017       1.6      50     125 ..      71     132 ..      48     172 .. 0.53

  Alignments for each domain:
  == domain 1  score: 8.3 bits;  conditional E-value: 0.0027
  Jnk-SapK_ap_N  79 eleeiedqweeerkelqekveqleeenrelelkaknaadqlsrleekeaelkkeysklheretellkkl 147
                    ++  +e+++ + + + +++v    + +++l ++ k+++d +  l+ + a+ k++y++l+er+ +l++  
     KOO23435.1  26 KIAALEEKLARIQHDADSAVGFAATSKDQLAKQKKDQKDIVDYLSMQLAQKKEDYAALEERYAQLVQAK 94 
                    566789999999999999999999*******999*******************************9865 PP

  == domain 2  score: 8.9 bits;  conditional E-value: 0.0017
  Jnk-SapK_ap_N  50 aeleelreeleqLeteyerekelrkraeeeleeiedqweeerkelqekveqleeenrelelkaknaadqlsrleek 125
                     +l + +e+   Le++y +  ++++++e++l ++ + ++ e ke q+k++  e ++ +l                +
     KOO23435.1  71 MQLAQKKEDYAALEERYAQLVQAKEESEKRLNQMLEDLKAELKETQSKLAASEAQCAQLT--------------AQ 132
                    344555555555555555555555555555555555555555555555555555555555..............33 PP

>> HMMR_N  Hyaluronan mediated motility receptor N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.5  17.2    0.0013       1.2     182     328 ..      25     171 ..      17     176 .. 0.75

  Alignments for each domain:
  == domain 1  score: 8.5 bits;  conditional E-value: 0.0013
      HMMR_N 182 vkQedmeaklqvtqknLeeskakvaqLkeklvslekekieekseteklleyieelsnvseql.ekykldiaqleellkekndeiesLkssLeekeqels 279
                  k   +e kl  +q++ +++ +  a  k++l    k+k+++k  ++ l  + ++ ++    l e+y + +++ ee  k  n+ +e+Lk +L+e + +l 
  KOO23435.1  25 LKIAALEEKLARIQHDADSAVGFAATSKDQL---AKQKKDQKDIVDYLSMQLAQKKEDYAALeERYAQLVQAKEESEKRLNQMLEDLKAELKETQSKLA 120
                 5667789999999999999999999999998...6666677777766666666555555555578999999999999999************9998775 PP

      HMMR_N 280 k...qvkdlnekcklle.kekeelvreeeekeqtlsaEleelkeklklkeqea 328
                 +   q  +l++  +++e  ++    + +   + tl+aEle  k  lk+ eq  
  KOO23435.1 121 AseaQCAQLTA--QVIEiGQLRAGAQGDAGAKATLTAELERYKAMLKQSEQHL 171
                 41014444444..4444444555788899999*****************9975 PP

>> Exonuc_VII_L  Exonuclease VII, large subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.2  10.4    0.0018       1.7     131     259 ..      16     174 ..      15     182 .. 0.40

  Alignments for each domain:
  == domain 1  score: 8.2 bits;  conditional E-value: 0.0018
  Exonuc_VII_L 131 PtaaAelvvpdkaeleeqleelerrlekai........................krlleekkqrleklasrlkspeellerkrqrldeleerleral 203
                   Pt+a + ++ ++a lee+l+++++  ++a+                        + +l +kk+   +l++r+++  +  e++++rl+++ e+l+++l
    KOO23435.1  16 PTEAESTLLLKIAALEEKLARIQHDADSAVgfaatskdqlakqkkdqkdivdylSMQLAQKKEDYAALEERYAQLVQAKEESEKRLNQMLEDLKAEL 112
                   7777777777777777777777776666662222221111111111111111112333444444444444443322222222222222222222222 PP

  Exonuc_VII_L 204 kkq...lkkkrerleelkerl.kekleekkerlkklkerle...................lleekkerleeleekleal 259
                   k++   l+++++++ +l++++ +                                     +le+ k +l++ e++l+ l
    KOO23435.1 113 KETqskLAASEAQCAQLTAQViE-----------------IgqlragaqgdagakatltaELERYKAMLKQSEQHLTVL 174
                   21111133333333333333322.................022222222333333333345777777777777777655 PP

>> MCU  Mitochondrial calcium uniporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.9   5.7    0.0016       1.5      16     105 ..      43     147 ..      26     155 .. 0.70

  Alignments for each domain:
  == domain 1  score: 8.9 bits;  conditional E-value: 0.0016
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXX-SS...............SSSSTSSSSSHHHHHHHHHHHHH-SHHHHHHHHTCCCGGGCHHHHGGGHHHHH CS
         MCU  16 vvialstlleeeeakvllrvkqlvkalesal...............nveeeqlkkereleekleelreelepleekkeeidekAerrtrrllwagLall 99 
                 + + +  + +++ ak+ ++ k +v+ l++ l               ++ ++++++e++l++ le+l++el++ + k +  ++++++ t +++ +g + +
  KOO23435.1  43 SAVGFAATSKDQLAKQKKDQKDIVDYLSMQLaqkkedyaaleeryaQLVQAKEESEKRLNQMLEDLKAELKETQSKLAASEAQCAQLTAQVIEIGQLRA 141
                 44444432333334444444555555555545555555556666678888999999***********************************99999888 PP

                 HHHTHH CS
         MCU 100 avqlgi 105
                 ++q  +
  KOO23435.1 142 GAQGDA 147
                 888755 PP

>> TMF_TATA_bd  TATA element modulatory factor 1 TATA binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.8  11.8     0.002       1.9       7      79 ..      59     132 ..      53     181 .. 0.90

  Alignments for each domain:
  == domain 1  score: 8.8 bits;  conditional E-value: 0.002
  TMF_TATA_bd   7 agpsvqlverlsseirrlEgElaslkeelerleaerdeareeivklmke.neelkelkkeleelekeleelqer 79 
                  ++ +  +v++ls ++ ++  ++a+l+e++++l + ++e ++ + +++++   elke++++l+  e+++++l+ +
   KOO23435.1  59 KKDQKDIVDYLSMQLAQKKEDYAALEERYAQLVQAKEESEKRLNQMLEDlKAELKETQSKLAASEAQCAQLTAQ 132
                  5566789**************************************9976257999************9999876 PP

>> ATG16  Autophagy protein 16 (ATG16)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.8  20.3    0.0038       3.5      25     174 ..      21     171 ..      17     179 .. 0.60

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 0.0038
       ATG16  25 nrLldrtsaleaenaklekaaasaks..sksskksakekeasasqsnskqsakiqsleqklaqlreelaelyksrgelaqrllelneelqkleeklked 121
                 + Ll +++ale++ a+++  a sa     +s+++ ak+k+++++      s ++++ ++  a+l e  a+l ++++e+++rl   n+ l++l+++lke 
  KOO23435.1  21 STLLLKIAALEEKLARIQHDADSAVGfaATSKDQLAKQKKDQKDI-VDYLSMQLAQKKEDYAALEERYAQLVQAKEESEKRL---NQMLEDLKAELKET 115
                 678889999999999998777777667544444444444444333.334445555555555555555555555555555554...44466666666666 PP

       ATG16 122 eerlaeleaeraaletkl...kdreeelrekeklvqdlqDElsaLqlqlnqaEekl 174
                 +++la+ ea++a+l+ ++    ++++  ++ + +  +l  El+  +  l+q E+ l
  KOO23435.1 116 QSKLAASEAQCAQLTAQVieiGQLRAGAQGDAGAKATLTAELERYKAMLKQSEQHL 171
                 66666666666666654311156677777777777778888888888888877766 PP

>> Macoilin  Macoilin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.7   9.5    0.0049       4.6     401     549 ..      30     129 ..       4     184 .. 0.55

  Alignments for each domain:
  == domain 1  score: 5.7 bits;  conditional E-value: 0.0049
    Macoilin 401 LeadikkLkaeLqasrqteqelrskissltseers....lkselqqlkkendllqtklhelvsakqkdkqtlqqlekrLkeekearaslekqLaeekkr 495
                 Le+++++++ + +++       ++++    + ++     l  +l q+k+++  l +++ +lv+ak +  + l+q+   Lk+e                 
  KOO23435.1  30 LEEKLARIQHDADSAVGFAATSKDQLAKQKKDQKDivdyLSMQLAQKKEDYAALEERYAQLVQAKEESEKRLNQMLEDLKAEL---------------- 112
                 55555555555544443333333333333333332111144566666666777777777777776666655555555555543................ PP

    Macoilin 496 kkeeeetaaravalaaasrsecteslkskkreleaeikkLekelklkeeqirel 549
                                                      k  + +l   e q+++l
  KOO23435.1 113 -------------------------------------KETQSKLAASEAQCAQL 129
                 .....................................33333333333333333 PP

>> TPR_MLP1_2  TPR/MLP1/MLP2-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.5  21.6     0.037        35      10     125 ..      20     132 ..      16     135 .. 0.86
   2 ?    4.9   1.0     0.027        25      54      94 ..     131     171 ..     123     174 .. 0.86

  Alignments for each domain:
  == domain 1  score: 4.5 bits;  conditional E-value: 0.037
  TPR_MLP1_2  10 ikslkeekeeaeaklqklqedlekqaeiakeaqqkYerelvkhaedvkelqa.lreelnelkaeiaelkaeaesakaeleeseesweeqkeelekelse 107
                  ++l+ +++++e+kl+ +q+d  +    a++ ++    +l k+++d k++ + l  +l++ k+++a l+++  ++ ++ eese+ +++  e l+ el+e
  KOO23435.1  20 ESTLLLKIAALEEKLARIQHDADSAVGFAATSKD----QLAKQKKDQKDIVDyLSMQLAQKKEDYAALEERYAQLVQAKEESEKRLNQMLEDLKAELKE 114
                 5667788999999999999999999999999999....9999999988876537899999999999999999999999999999999999999999999 PP

  TPR_MLP1_2 108 lekriedlneqNklLhdQ 125
                 +++++   ++q + L  Q
  KOO23435.1 115 TQSKLAASEAQCAQLTAQ 132
                 999999999887777666 PP

  == domain 2  score: 4.9 bits;  conditional E-value: 0.027
  TPR_MLP1_2  54 edvkelqalreelnelkaeiaelkaeaesakaeleeseesw 94 
                 ++v e+ +lr+ ++      a+l+ae+e+ ka l++se+++
  KOO23435.1 131 AQVIEIGQLRAGAQGDAGAKATLTAELERYKAMLKQSEQHL 171
                 56668899999999999*********************986 PP

>> Cnn_1N  Centrosomin N-terminal motif 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.6   0.00043      0.41      19      70 ..      23      84 ..      22      87 .. 0.92
   2 ?    1.4   5.1      0.37   3.5e+02      26      65 ..      83     125 ..      80     133 .. 0.51
   3 ?    2.8   0.4      0.14   1.4e+02      53      72 ..     151     170 ..     149     171 .. 0.90

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00043
      Cnn_1N 19 LKLriyfLeerleklse..........eqkeellkenielkveveslqkelkekkkllreae 70
                L L+i+ Lee+l +++           ++k++l k+  + k+ v  l  +l +kk+    +e
  KOO23435.1 23 LLLKIAALEEKLARIQHdadsavgfaaTSKDQLAKQKKDQKDIVDYLSMQLAQKKEDYAALE 84
                559*************99************************************99776665 PP

  == domain 2  score: 1.4 bits;  conditional E-value: 0.37
      Cnn_1N  26 Leerleklse...eqkeellkenielkveveslqkelkekkkl 65 
                 Leer  +l +   e+ + l + + +lk e+++ q +l + + +
  KOO23435.1  83 LEERYAQLVQakeESEKRLNQMLEDLKAELKETQSKLAASEAQ 125
                 5555333333222555555555555555555555555555544 PP

  == domain 3  score: 2.8 bits;  conditional E-value: 0.14
      Cnn_1N  53 eslqkelkekkkllreaeka 72 
                 ++l+ el+++k +l+++e++
  KOO23435.1 151 ATLTAELERYKAMLKQSEQH 170
                 7999*************986 PP

>> SlyX  SlyX
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.0       2.9   2.8e+03       5      16 ..      27      38 ..      24      46 .. 0.70
   2 ?    4.6   2.3     0.054        51      15      52 ..      62      99 ..      53     103 .. 0.88
   3 ?    6.8   2.3     0.011        10      16      53 ..     102     139 ..     100     171 .. 0.86

  Alignments for each domain:
  == domain 1  score: -1.0 bits;  conditional E-value: 2.9
                HHHHHHHHHHHH CS
        SlyX  5 leeLEiklafqe 16
                + +LE+kla  +
  KOO23435.1 27 IAALEEKLARIQ 38
                677777777554 PP

  == domain 2  score: 4.6 bits;  conditional E-value: 0.054
                HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-XXXXX CS
        SlyX 15 qedtieeLndvvaeqqqqidrlqrqlrllaerlkelee 52
                q d ++ L+ ++a+  ++ ++l+++ ++l++  +e e+
  KOO23435.1 62 QKDIVDYLSMQLAQKKEDYAALEERYAQLVQAKEESEK 99
                899**************************998877765 PP

  == domain 3  score: 6.8 bits;  conditional E-value: 0.011
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-XXXXXX CS
        SlyX  16 edtieeLndvvaeqqqqidrlqrqlrllaerlkelees 53 
                  +++e+L +++ e q ++++ ++q+++l+ ++ e+ + 
  KOO23435.1 102 NQMLEDLKAELKETQSKLAASEAQCAQLTAQVIEIGQL 139
                 5789**************************99655544 PP

>> CENP-H  Centromere protein H (CENP-H)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   3.2       2.2   2.1e+03      52      75 ..      54      80 ..      19     101 .. 0.46
   2 ?    3.0  13.8      0.14   1.3e+02      16      86 ..      99     175 ..      48     186 .. 0.79

  Alignments for each domain:
  == domain 1  score: -0.8 bits;  conditional E-value: 2.2
      CENP-H 52 elakekesek.......eklkeelekleael 75
                +lak+k+ +k       +    +l++ ++++
  KOO23435.1 54 QLAKQKKDQKdivdylsM----QLAQKKEDY 80
                333333333333322221....222211111 PP

  == domain 2  score: 3.0 bits;  conditional E-value: 0.14
      CENP-H  16 lklsqelrelqeeltevekenlrlkrknrelaael.lelakekesek.....eklkeelekleaelkksrqrwrvvk 86 
                 ++l+q l++l++el e++ +  + ++++++l+a++ +  +  + ++       +l++ele+ +a lk+s+q+ +v+ 
  KOO23435.1  99 KRLNQMLEDLKAELKETQSKLAASEAQCAQLTAQViEIGQLRAGAQGdagakATLTAELERYKAMLKQSEQHLTVLA 175
                 46677788888888888888888888888888888554444444444568777799999999999999999999975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (542 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1691  (0.0943165); expected 358.6 (0.02)
Passed bias filter:                      767  (0.0427799); expected 358.6 (0.02)
Passed Vit filter:                       140  (0.00780858); expected 17.9 (0.001)
Passed Fwd filter:                        30  (0.00167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              19  [number of targets reported over threshold]
# CPU time: 0.83u 0.33s 00:00:01.15 Elapsed: 00:00:00.50
# Mc/sec: 3233.62
//
Query:       KOO23436.1  [L=768]
Description: wd repeat-containing protein 78 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.3e-09   38.5  13.7    0.00085   20.1   0.3    5.6  5  WD40         WD domain, G-beta repeat
    2.9e-07   30.7   0.0          2    8.8   0.0    5.4  7  ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain


Domain annotation for each model (and alignments):
>> WD40  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.0      0.34   3.1e+03      13      27 ..     401     415 ..     390     435 .. 0.79
   2 !   12.1   0.0   3.3e-05      0.29      10      38 .]     448     479 ..     444     479 .. 0.79
   3 ?    1.3   0.1     0.083   7.5e+02      12      38 .]     497     533 ..     486     533 .. 0.59
   4 !   20.1   0.3   9.5e-08   0.00085       2      37 ..     608     645 ..     607     646 .. 0.86
   5 !    8.8   1.0   0.00034         3      12      38 .]     661     689 ..     649     689 .. 0.78

  Alignments for each domain:
  == domain 1  score: -0.7 bits;  conditional E-value: 0.34
                 EEEEEEETTSSEEEE CS
        WD40  13 vtslafspdgawlas 27 
                 v++l ++p+++ l++
  KOO23436.1 401 VSCLEWNPENKDLLA 415
                 899*99998876554 PP

  == domain 2  score: 12.1 bits;  conditional E-value: 3.3e-05
                 S..SSEEEEEEETTSSEEE.EEETTSEEEEEE CS
        WD40  10 H..ssvtslafspdgawla.sGsdDgtvriWd 38 
                 H  ++vt++afs+ ++ l+ +G +Dgtv ++d
  KOO23436.1 448 HvpCGVTAIAFSHKHPNLLaAGLYDGTVCLFD 479
                 65456*****99999997616657*****998 PP

  == domain 3  score: 1.3 bits;  conditional E-value: 0.083
                 S.....EEEEEEETTSSE............EEEEETTSEEEEEE CS
        WD40  12 s.....vtslafspdgaw............lasGsdDgtvriWd 38 
                 +     v+ l      +w            ++ +s Dg v  Wd
  KOO23436.1 497 GkhtdpVWQL------TWvshpdpargemlVSISS-DGRVTRWD 533
                 1445569999......6644444444776333467.99887776 PP

  == domain 4  score: 20.1 bits;  conditional E-value: 9.5e-08
                 EEEEEEESS.SSEEEEEEETTSSEEE.EEETTSEEEEE CS
        WD40   2 qclrtltGH.ssvtslafspdgawla.sGsdDgtvriW 37 
                 q+l ++ GH ++v+ l++sp ++ ++ s+s D ++++W
  KOO23436.1 608 QHLESFFGHsGPVYKLRWSPFSPNIFlSCSADWSIKLW 645
                 6677888**777************7449*99******* PP

  == domain 5  score: 8.8 bits;  conditional E-value: 0.00034
                 S.EEEEEEETTSSEEEEE..ETTSEEEEEE CS
        WD40  12 s.vtslafspdgawlasG..sdDgtvriWd 38 
                 + v ++++sp+++ ++++  + Dg + +Wd
  KOO23436.1 661 DyVADICWSPHNSTVFASvtG-DGRIDVWD 689
                 24999*********9876656.*******9 PP

>> ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.8   0.0   0.00023         2      22      58 ..     380     419 ..     376     442 .. 0.84
   2 !    4.4   0.0    0.0053        48      41      71 ..     453     484 ..     434     511 .. 0.78
   3 ?    1.6   0.0     0.038   3.4e+02      52      71 ..     465     484 ..     464     554 .. 0.59
   4 ?   -0.2   0.0      0.14   1.2e+03      52      89 ..     578     625 ..     567     628 .. 0.52
   5 ?    2.5   0.0     0.021   1.8e+02      37      90 ..     616     669 ..     592     671 .. 0.79
   6 !    5.9   0.0    0.0017        15      38      87 ..     660     710 ..     649     715 .. 0.71
   7 !    7.5   0.0   0.00056         5       2      68 ..     667     734 ..     666     752 .. 0.85

  Alignments for each domain:
  == domain 1  score: 8.8 bits;  conditional E-value: 0.00023
  ANAPC4_WD40  22 fRlngqrvwtl..eedkedsevrsLaWkpdgk.lLavays 58 
                   R ++ ++wt+  ee + +++v++L+W+p++k lLa ay 
   KOO23436.1 380 PRASFSQLWTFasEELSVGRNVSCLEWNPENKdLLAAAYG 419
                  589999*****87777899*********987636777765 PP

  == domain 2  score: 4.4 bits;  conditional E-value: 0.0053
  ANAPC4_WD40  41 vrsLaWkpdg.klLavaysdgevrlldaesgk 71 
                  v+++a++++  +lLa +  dg+v l+d+ ++ 
   KOO23436.1 453 VTAIAFSHKHpNLLAAGLYDGTVCLFDVRKEP 484
                  7888887654389**************99865 PP

  == domain 3  score: 1.6 bits;  conditional E-value: 0.038
  ANAPC4_WD40  52 lLavaysdgevrlldaesgk 71 
                  lLa +  dg+v l+d+ ++ 
   KOO23436.1 465 LLAAGLYDGTVCLFDVRKEP 484
                  56666666666666665543 PP

  == domain 4  score: -0.2 bits;  conditional E-value: 0.14
  ANAPC4_WD40  52 lLavaysdgevrlldaesgkvvhslsvksek...........avtclgW 89 
                   +a++ +d ++ +   e+g  +h++s++ ++            v +l W
   KOO23436.1 578 CIAFSLKDPNIYMAGTEDGP-IHKCSCSYNEqhlesffghsgPVYKLRW 625
                  55555555555555555553.3444444433333333333335777777 PP

  == domain 5  score: 2.5 bits;  conditional E-value: 0.021
  ANAPC4_WD40  37 edsevrsLaWkpdg.klLavaysdgevrlldaesgkvvhslsvksekavtclgWg 90 
                  +++ v +L+W+p   +++    +d +++l + es   + ++  +++  v+ + W+
   KOO23436.1 616 HSGPVYKLRWSPFSpNIFLSCSADWSIKLWHQESPSAIYTFFSTTD-YVADICWS 669
                  6678999****97615555555677*********999999977777.58888885 PP

  == domain 6  score: 5.9 bits;  conditional E-value: 0.0017
  ANAPC4_WD40  38 dsevrsLaWkp.dgklLavaysdgevrlldaesgkvvhslsvksekavtcl 87 
                     v +++W+p + +++a ++ dg++ + d++  ++   +s+k++k+ +++
   KOO23436.1 660 TDYVADICWSPhNSTVFASVTGDGRIDVWDISVSTLDPLSSIKTDKKLSSV 710
                  567999****8355799***********98776555444444444445555 PP

  == domain 7  score: 7.5 bits;  conditional E-value: 0.00056
  ANAPC4_WD40   2 swcptmD.LiAlatedgellvfRlngqrvwtleedkedsevrsLaWkpdgklLavaysdgevrlldae 68 
                  +w+p++   +A +t dg++ v  ++   +  l++ k+d++ +s+a++    +L+v+++ g v l+  e
   KOO23436.1 667 CWSPHNStVFASVTGDGRIDVWDISVSTLDPLSSIKTDKKLSSVAFSLASPVLVVGHEGGGVDLYALE 734
                  677765426788899999999999988888889999*************************9999765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (768 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       458  (0.0255452); expected 358.6 (0.02)
Passed bias filter:                      285  (0.015896); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.63u 0.29s 00:00:00.92 Elapsed: 00:00:00.45
# Mc/sec: 5181.07
//
Query:       KOO23437.1  [L=166]
Description: hypothetical protein Ctob_010328 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (166 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       751  (0.0418874); expected 358.6 (0.02)
Passed bias filter:                      646  (0.036031); expected 358.6 (0.02)
Passed Vit filter:                        62  (0.00345808); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.43u 0.25s 00:00:00.68 Elapsed: 00:00:00.41
# Mc/sec: 1224.21
//
Query:       KOO23438.1  [L=87]
Description: hypothetical protein Ctob_010327 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
  ------ inclusion threshold ------
        1.1    8.8  16.0        1.2    8.7  16.0    1.0  1  DUF2201_N        Putative metallopeptidase domain
        2.9    8.0  19.1        3.2    7.9  19.1    1.1  1  DUF2058          Uncharacterized protein conserved in bacteri
        6.9    5.9  20.3        7.3    5.9  20.3    1.0  1  Rtf2             Rtf2 RING-finger


Domain annotation for each model (and alignments):
>> DUF2201_N  Putative metallopeptidase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.7  16.0    0.0002       1.2     127     208 ..       4      85 ..       2      87 .] 0.75

  Alignments for each domain:
  == domain 1  score: 8.7 bits;  conditional E-value: 0.0002
   DUF2201_N 127 aerlytalggadrdgekkgdgekaakkkrsdspesarvgalatgfeadleesekgksseeeeseear..ewrealqraleagka 208
                 aerl++a+ +a   +e++++g++ ++kk++++ +s ++++ a  +ea+l+ + ++++++e+ + ea+   ++++ q+ ++a++a
  KOO23438.1   4 AERLANAMAKALLAEEEAEKGKASKVKKEKKK-SSNKARSEA-KTEAELAVEAEAQEQAEARETEAAnaLVTAREQKEAKAAQA 85 
                 8*******999999999999999999998888.666666665.56777777778888888776666556667777776666655 PP

>> DUF2058  Uncharacterized protein conserved in bacteria (DUF2058)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.9  19.1   0.00053       3.2      12      72 ..      21      85 ..       6      87 .] 0.60

  Alignments for each domain:
  == domain 1  score: 7.9 bits;  conditional E-value: 0.00053
     DUF2058 12 vdkkkakkakkekrkqkkqkkkgaadeakeaaeeakaekae.rdrelneqr...keeaekkalka 72
                ++k ka+k+kkek+k++++++++a++ea+ a+e++++e+ae r+ e +++    +e++e+ka++a
  KOO23438.1 21 AEKGKASKVKKEKKKSSNKARSEAKTEAELAVEAEAQEQAEaRETEAANALvtaREQKEAKAAQA 85
                4577999********99999997777776666666555554244444443300033444455555 PP

>> Rtf2  Rtf2 RING-finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.9  20.3    0.0012       7.3     177     248 ..      11      84 ..       2      87 .] 0.57

  Alignments for each domain:
  == domain 1  score: 5.9 bits;  conditional E-value: 0.0012
        Rtf2 177 llkarleeekakkkkkkkakkkkkakakg..skaeaeaaskssseasesskagkkkekkkekkkrslaekneks 248
                 + ka l ee+a+k k++k kk+kk+++++  s+a++ea+ + ++ea+e+++a++++++++  ++r+++e ++++
  KOO23438.1  11 MAKALLAEEEAEKGKASKVKKEKKKSSNKarSEAKTEAELAVEAEAQEQAEARETEAANALVTAREQKEAKAAQ 84 
                 44566666666655554445444444433003344444455556666777888888888888888777766655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (87 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      3037  (0.16939); expected 358.6 (0.02)
Passed bias filter:                      776  (0.0432818); expected 358.6 (0.02)
Passed Vit filter:                       130  (0.00725082); expected 17.9 (0.001)
Passed Fwd filter:                        14  (0.000780858); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.42u 0.28s 00:00:00.70 Elapsed: 00:00:00.41
# Mc/sec: 644.34
//
Query:       KOO23439.1  [L=128]
Description: mitogen-activated protein kinase kinase 1-interacting protein 1 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.7e-18   65.1   0.0    5.2e-18   65.0   0.0    1.0  1  MAPKK1_Int  Mitogen-activated protein kinase kinase 1 interac


Domain annotation for each model (and alignments):
>> MAPKK1_Int  Mitogen-activated protein kinase kinase 1 interacting
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.0   0.0   2.9e-22   5.2e-18      18     115 ..      19     115 ..       9     119 .. 0.87

  Alignments for each domain:
  == domain 1  score: 65.0 bits;  conditional E-value: 2.9e-22
  MAPKK1_Int  18 laiivtDrDGvvllkvgddssadsalrpslistfvlatdQasKLdlgknksiislyedyqvvqfnklplilsviastecNiGlilaleeelepllnel 115
                  + ++tD+ Gvvll+ +   +ad+   + + +tf+ + + a KL++gkn+   ++y++ +vv+++ +pl+l+++a++++N+Gl+l   + l+  ++ l
  KOO23439.1  19 RSALLTDQEGVVLLRTAP-AAADELDLQRMAATFAQTAEHAGKLGMGKNRHATAFYDKAIVVHVSCSPLVLTLVADSDANVGLLLDAVPLLTAAVEPL 115
                 56789**********765.56666777899******************************************************98877776666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (128 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       347  (0.0193541); expected 358.6 (0.02)
Passed bias filter:                      296  (0.0165096); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.23s 00:00:00.62 Elapsed: 00:00:00.40
# Mc/sec: 971.03
//
Query:       KOO23440.1  [L=733]
Description: protein prolifera-like protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   8.2e-103  342.3   0.0   1.5e-102  341.5   0.0    1.4  1  MCM              MCM P-loop domain
    6.3e-31  106.8   0.4    1.1e-30  106.1   0.4    1.3  1  MCM_OB           MCM OB domain
    4.2e-17   62.3   0.6    1.5e-16   60.6   0.6    2.0  1  MCM_lid          MCM AAA-lid domain
    4.4e-15   56.1   0.4    1.2e-14   54.7   0.4    1.8  1  MCM_N            MCM N-terminal domain
    3.2e-08   33.2   0.2    2.5e-05   23.8   0.0    2.7  2  Mg_chelatase     Magnesium chelatase, subunit ChlI
    1.3e-07   31.7   0.0    4.1e-07   30.1   0.0    2.0  1  AAA_5            AAA domain (dynein-related subfamily)
    0.00031   20.6   0.1    0.00086   19.2   0.1    1.8  1  AAA_3            ATPase family associated with various cellul
     0.0065   16.9   0.7       0.51   10.8   0.1    2.6  2  AAA              ATPase family associated with various cellul
  ------ inclusion threshold ------
      0.017   14.9   0.2      0.017   14.9   0.2    2.3  3  AAA_lid_2        AAA lid domain
      0.061   13.4   0.0       0.16   12.0   0.0    1.8  1  MMR_HSR1         50S ribosome-binding GTPase
       0.12   12.0   0.3       0.93    9.2   0.0    2.3  3  Sigma54_activat  Sigma-54 interaction domain
       0.23   11.8   0.1       0.23   11.8   0.1    2.9  3  AAA_16           AAA ATPase domain
       0.29   11.8   5.1       0.84   10.3   0.3    3.4  4  Mg_chelatase_C   Magnesium chelatase, subunit ChlI C-terminal


Domain annotation for each model (and alignments):
>> MCM  MCM P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  341.5   0.0  1.1e-105  1.5e-102       3     221 ..     327     545 ..     325     548 .. 0.98

  Alignments for each domain:
  == domain 1  score: 341.5 bits;  conditional E-value: 1.1e-105
                 HHHHHHHTSSTHHHHHHHHSSTTSSS-HHHHHHHHHHHH---EBBBSSSSBBCSS-EEEEEESSTSTHHHHHHHHHHHSSSEEEEESSSSSSSHSSSEE CS
         MCM   3 eeikelakekdiieklvksiapsiyghedvkkaillqlfggvkkkledktklrgdinvllvgdpgtaKsqlLkyveklapravytsgkgssaagLtaav 101
                 +++ e ++ +d+++k+++siap+i+ghedvkka+ll+l+gg  +++ed++k+rgdinv+l+gdpg+aKsqlLk+++++apravyt+gkgss++gLtaav
  KOO23440.1 327 QKVLEATRGEDLYHKMAQSIAPEIFGHEDVKKALLLLLVGGGLREMEDGMKIRGDINVCLMGDPGVAKSQLLKHIATIAPRAVYTTGKGSSGVGLTAAV 425
                 5667778899***************************************************************************************** PP

                 EEESSSSSEEEEETHHHHTTTSEEEEESGGGSTCHHHHHHHHHHHHSEEEEESSSCEEEEE--EEEEEEE--SSSSCCTTS-HHHHSSSSHHHHHHSSE CS
         MCM 102 vrdeetgefvleaGalvladkGvcciDefdkmkeedrsalhEamEqqtisiaKaGivatLnartsvlaAanpkagrydkkksvaeninlsaalLsrFDl 200
                 +rd++tge+vle+Galvlad G+cciDefdkm+e+dr+a+hE+mEqqt+siaKaGi++tLnartsvlaAanp++++y+++++ +eninl+aalLsrFDl
  KOO23440.1 426 TRDTATGELVLEGGALVLADMGICCIDEFDKMEESDRTAIHEVMEQQTVSIAKAGITTTLNARTSVLAAANPVFSKYNPHRTPEENINLPAALLSRFDL 524
                 *************************************************************************************************** PP

                 EEEE-SSTTHHHHHHHHHHHH CS
         MCM 201 ifvllDkvdeekDeelaehiv 221
                 +++llDk+d+e+D++laeh+ 
  KOO23440.1 525 LWLLLDKPDREHDQRLAEHVA 545
                 *******************96 PP

>> MCM_OB  MCM OB domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  106.1   0.4     8e-34   1.1e-30       2     124 ..     158     285 ..     157     287 .. 0.93

  Alignments for each domain:
  == domain 1  score: 106.1 bits;  conditional E-value: 8e-34
                 XGG--GGGTTSEEEEEEEEEEE---EEEEEEEEEEETTT-.-EEES---....-S.B-..TTT-HHH-EEE-GGGSEEEEEEEEEEE------------ CS
      MCM_OB   2 lRdlrsehigklvkveGivtrasevkpklkkavfeckkcgktvevelee....Pr.kCeekeCeskdpfkletekskfvdfqklklQEspeevpaGelP 95 
                 lR++r++ ig+l +v+Givtr+ evkp++  a+++c k g +v  e++     P  +C+ ++C ++++++l+t+ +kfv fq++k+QE+ +evp+G++P
  KOO23440.1 158 LRKVRANAIGNLLTVKGIVTRVAEVKPSIAVATYTCAKGGFEVYQEVQGrsfmPLfTCPAQNCCQNGRLQLQTRGCKFVRFQEVKIQEEADEVPVGHVP 256
                 7***************************************98876666666777559**9999999********************************* PP

                 -EEEEEEEGGGTT---TT-EEEEEEEEEE CS
      MCM_OB  96 rslevileddlvdkvkPGdrvevtGiyra 124
                 r+l+++l+++l++++++Gd v+v Gi+  
  KOO23440.1 257 RQLTIHLYGELTRSCSAGDVVTVSGIFLP 285
                 **************************976 PP

>> MCM_lid  MCM AAA-lid domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.6   0.6   1.1e-19   1.5e-16       2      85 ..     561     643 ..     560     645 .. 0.93

  Alignments for each domain:
  == domain 1  score: 60.6 bits;  conditional E-value: 1.1e-19
                 HHHHHHHHHHHTT--BETCHHHHHHHHHHHHHHHHHTSSTSSSST--HHHHHHHHHHHHHHHHHHTSSSE-HHHHHHHHHHHHH CS
     MCM_lid   2 llrkYiayarekikPklseeakeklseaYvelRkeeedskrksipitvRqLesliRLseAlAklrlsevvteedveeairllke 85 
                 ++r+ i+ ar +++P++ +e++ ++++ Y+++R+e+  + ++   +++R+L +++RLs+AlA+lr+ ++v++ed+ ea rl++ 
  KOO23440.1 561 FMRAMISHAR-QFEPRVPKEVSAYIVDEYIRMRQESLIHGATFGFTSARTLLAILRLSQALARLRCAHEVSREDIVEARRLMSL 643
                 68999*****.***********************9955567889999**********************************975 PP

>> MCM_N  MCM N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.7   0.4   8.9e-18   1.2e-14       3     102 ..      22     147 ..      20     149 .. 0.89

  Alignments for each domain:
  == domain 1  score: 54.7 bits;  conditional E-value: 8.9e-18
       MCM_N   3 kFedFLeefkddsededgekkYrdqlqemaerekttLevdlddLaaf.deeLaeailenpkeylplleealkevvkklepsykdd.............. 86 
                 k  +FL+++++d++d++  +kYr++lq++a+r ++ ++vdldd++a   +e+ e++ +n k+y  ll +a+++v+++ + + + d              
  KOO23440.1  22 KLVNFLQDYEEDDSDGERVHKYRKMLQQVANRRSRVVYVDLDDVHAAlGDEFCEQMKSNAKRYQRLLADAIDRVMPEPTVDTHADedvadillrsrlqr 120
                 5679*****9999999999***************************9667***************************9997777778999999999999 PP

       MCM_N  87 .........a..kefpaeltrrfqvrf 102
                          +  ++ p+ l+rr++v +
  KOO23440.1 121 astgdaeanDplQQVPSALKRRYEVML 147
                 998888765268999999999999875 PP

>> Mg_chelatase  Magnesium chelatase, subunit ChlI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.6   0.0    0.0033       4.5      20      49 ..     379     408 ..     370     418 .. 0.90
   2 !   23.8   0.0   1.8e-08   2.5e-05      96     161 ..     435     500 ..     422     523 .. 0.90

  Alignments for each domain:
  == domain 1  score: 6.6 bits;  conditional E-value: 0.0033
  Mg_chelatase  20 aGgHnlllvGppGsGKtmlakrlpsllppl 49 
                    G  n+ l+G pG  K+ l k ++++ p+ 
    KOO23440.1 379 RGDINVCLMGDPGVAKSQLLKHIATIAPRA 408
                   58889*********************9976 PP

  == domain 2  score: 23.8 bits;  conditional E-value: 1.8e-08
  Mg_chelatase  96 kpkpGeislahnGvLfLDElpefkrkvlevLRePledgevtisrakakvefparfqlvaamNpcpc 161
                     + G++ la  G+  +DE+ +++++   ++ e +e+++v+i++a  +++  ar+ ++aa+Np  +
    KOO23440.1 435 VLEGGALVLADMGICCIDEFDKMEESDRTAIHEVMEQQTVSIAKAGITTTLNARTSVLAAANPVFS 500
                   567899*********************************************************765 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.1   0.0     3e-10   4.1e-07       1     138 []     383     522 ..     383     522 .. 0.79

  Alignments for each domain:
  == domain 1  score: 30.1 bits;  conditional E-value: 3e-10
                 EEEEE--SSSSHHHHHHHGGGGB.S--EEEEE--TT--HHHHH--B--.........--------G-SEEEEESGGG--HHHHHHHHHHHHSSEEE..- CS
       AAA_5   1 dvlLvGppGtgKselaerlaaal.nreveyvqltrdtteedlkgrreikngttslvdsplvraaregeilvlDEveraesevlnsLlslleerrlllee 98 
                 +v+L G+pG++Ks+l +++a    ++ +++  ++++   +  +  r+++ g+ +l+ ++lv       i+++DE++++e +   + + ++e++++++++
  KOO23440.1 383 NVCLMGDPGVAKSQLLKHIATIApRAVYTTGKGSSGVGLTAAVT-RDTATGELVLEGGALV--LADMGICCIDEFDKMEESDRTAIHEVMEQQTVSIAK 478
                 69********************9878888888888877655444.3445799999******..88999***********9999**************99 PP

                 SSSEEE---........-EEEEEESS--...-TT-TTHHHHTT- CS
       AAA_5  99 ggelvkakndd.ller.frviatanpld..rslnelspalrsRf 138
                  g  +  ++ +  l +   v+  +np +   +  +l +al+sRf
  KOO23440.1 479 AGITTTLNARTsVLAAaNPVFSKYNPHRtpEENINLPAALLSRF 522
                 99888888764333332445555555556666667778888887 PP

>> AAA_3  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.2   0.1   6.3e-07   0.00086       2     115 ..     384     500 ..     383     524 .. 0.74

  Alignments for each domain:
  == domain 1  score: 19.2 bits;  conditional E-value: 6.3e-07
       AAA_3   2 vllegvPGlaktllvkalakaldlefkriqftpdllPsdi..lGtevfeekekefefkkGpvf.an..llladeinrappktqsalleameerqvtve. 94 
                 v l g PG+ak +l k++a++      r  +t+    s +  + +   ++++ e+ ++ G+++ a+  +   de ++ +   ++a+ e+me+++v+++ 
  KOO23440.1 384 VCLMGDPGVAKSQLLKHIATIAP----RAVYTTGKGSSGVglTAAVTRDTATGELVLEGGALVlADmgICCIDEFDKMEESDRTAIHEVMEQQTVSIAk 478
                 5678999****999999998754....444555554444411555556667799999999865255336778**********************99972 PP

       AAA_3  95 .gethklpepflvlatqnPieq 115
                  g t++l+    vla+ nP+ +
  KOO23440.1 479 aGITTTLNARTSVLAAANPVFS 500
                 256999*************954 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.9   0.1      0.05        69      40      98 ..      37      97 ..      22     123 .. 0.79
   2 !   10.8   0.1   0.00037      0.51       1     110 [.     384     496 ..     384     507 .. 0.63

  Alignments for each domain:
  == domain 1  score: 3.9 bits;  conditional E-value: 0.05
                THHHHHHHHHHHHHHHTS.TSEEEEEETGGGHHHHH.TTCCCHHHHHHHHHHHHHHHHTTT CS
         AAA 40 gesekkirelfkeakeka.kpsilfiDEidalaksr.sgseseeeervvnqLlteldgvkk 98
                ge+ +k r++++++ + + + + + +D+++a  +++  ++ +++++r +  L  ++d+v  
  KOO23440.1 37 GERVHKYRKMLQQVANRRsRVVYVDLDDVHAALGDEfCEQMKSNAKRYQRLLADAIDRVMP 97
                778889999999965555344667789*******999888899999999999999998765 PP

  == domain 2  score: 10.8 bits;  conditional E-value: 0.00037
                 EEEESSTTSSHHHHHHHHHHHHTHEEEEEETTTCSSSSTTHHHHHHHHHHHHHHHTS.......TSEEEEEETGGGHHHHHTTC.CCHHHHHHHHHHHH CS
         AAA   1 vllyGppGtGKTllakavakelgvefleisgsellskyvgesekkirelfkeakeka.......kpsilfiDEidalaksrsgs.eseeeervvnqLlt 91 
                 v+l+G pG+ K+ l k +a+ + + ++++   +     vg +++ +r++ +     +       +  i  iDE+d++ +s++++ ++  e+++v+   +
  KOO23440.1 384 VCLMGDPGVAKSQLLKHIATIAPRAVYTTGKGSSG---VGLTAAVTRDTATGELVLEggalvlaDMGICCIDEFDKMEESDRTAiHEVMEQQTVSIAKA 479
                 79*******************97766555444444...67777777777765322223457886669**********8888333122223333332222 PP

                 HHHHTTTS...SSTEEEEEEES CS
         AAA  92 eldgvkkk...eskvivigatn 110
                  +         ++++ v++a+n
  KOO23440.1 480 GI-----TttlNARTSVLAAAN 496
                 22.....023345667777776 PP

>> AAA_lid_2  AAA lid domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.0       5.8     8e+03      37      56 ..      59      78 ..      54      93 .. 0.76
   2 ?   -3.4   0.1       6.5     9e+03      41      58 ..     107     121 ..     102     134 .. 0.53
   3 ?   14.9   0.2   1.2e-05     0.017      10      49 ..     601     640 ..     598     664 .. 0.87

  Alignments for each domain:
  == domain 1  score: -3.2 bits;  conditional E-value: 5.8
   AAA_lid_2 37 yVtpeDvkeaaplVLaHRlr 56
                yV  +Dv +a +  ++  ++
  KOO23440.1 59 YVDLDDVHAALGDEFCEQMK 78
                88899999998876666665 PP

  == domain 2  score: -3.4 bits;  conditional E-value: 6.5
   AAA_lid_2  41 eDvkeaaplVLaHRlrre 58 
                 eD   +a   L+ Rl+r 
  KOO23440.1 107 ED---VADILLRSRLQRA 121
                 44...4555566666633 PP

  == domain 3  score: 14.9 bits;  conditional E-value: 1.2e-05
   AAA_lid_2  10 elgvsgrRadlallraArAlAalegrdyVtpeDvkeaapl 49 
                  +g  + R  la+lr ++AlA l+ +++V+ eD+ ea +l
  KOO23440.1 601 TFGFTSARTLLAILRLSQALARLRCAHEVSREDIVEARRL 640
                 567788899*************************998766 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   0.00012      0.16       1      55 [.     383     448 ..     383     513 .. 0.75

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 0.00012
                 EEEEEESTTSSHHHHHHHHH..........TS.TEEESSSTTSSSSEEEEEEEETTEEEEEEECGG CS
    MMR_HSR1   1 evaivGrpNvGKStLinalt..........ge.kaivsdkpgtTrdinegrvklkgkeielvDtpG 55 
                 +v+++G p v KS L++ +           g+  + v+ ++ +Trd+ +g++ l+g  ++l+D+  
  KOO23440.1 383 NVCLMGDPGVAKSQLLKHIAtiapravyttGKgSSGVGLTAAVTRDTATGELVLEGGALVLADMGI 448
                 599****************9555555555435589******************9999******943 PP

>> Sigma54_activat  Sigma-54 interaction domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.0       5.5   7.6e+03     143     163 ..     323     343 ..     321     345 .. 0.83
   2 ?   -0.5   0.0      0.64   8.9e+02      20      47 ..     379     406 ..     372     420 .. 0.82
   3 ?    9.2   0.0   0.00067      0.93      85     143 ..     437     497 ..     424     507 .. 0.87

  Alignments for each domain:
  == domain 1  score: -3.5 bits;  conditional E-value: 5.5
                      S-HHHHHHTTSS-HHHHHHHT CS
  Sigma54_activat 143 edleeaveegkfredLyyrln 163
                      e+++++v e +  edLy++++
       KOO23440.1 323 EEMRQKVLEATRGEDLYHKMA 343
                      67888999999999***9986 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 0.64
                      TSSS-EEEECSTTSSHHHHHHHHHHHST CS
  Sigma54_activat  20 ktdlsvlitGesGtGKellaraiheask 47 
                      + d++v ++G+ G+ K+ l ++i +  +
       KOO23440.1 379 RGDINVCLMGDPGVAKSQLLKHIATIAP 406
                      5678999*********999888866555 PP

  == domain 3  score: 9.2 bits;  conditional E-value: 0.00067
                      BEHHHHHTTTSEEEEETGGGS-HHHHHHHHHHHHHSE..EESBTSSSEEE--EEEEEEESS CS
  Sigma54_activat  85 kkGlfekadgGtlfLDeigelplelQekLlrvlqege..vervGsskeikvdvriiaatne 143
                      + G++  ad G+  +De  +++ +  + + +v+++++  + + G +++ ++ + ++aa+n 
       KOO23440.1 437 EGGALVLADMGICCIDEFDKMEESDRTAIHEVMEQQTvsIAKAGITTTLNARTSVLAAANP 497
                      569999***************************9997225799************999985 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.3       1.2   1.6e+03      60      91 ..      62      83 ..      31     145 .. 0.47
   2 ?   11.8   0.1   0.00017      0.23      26      88 ..     383     437 ..     375     501 .. 0.70
   3 ?   -1.9   0.1       2.8   3.8e+03      93     145 ..     657     711 ..     599     732 .. 0.52

  Alignments for each domain:
  == domain 1  score: -0.7 bits;  conditional E-value: 1.2
      AAA_16 60 cdqlesaipysalaqalareellrqlldeaes 91
                 d+            al  +e+++q++++a+ 
  KOO23440.1 62 LDDV---------HAAL-GDEFCEQMKSNAKR 83
                3333.........2222.33444444444222 PP

  == domain 2  score: 11.8 bits;  conditional E-value: 0.00017
      AAA_16  26 lvllsGesGvGKsslvrellralekdggiflrgkcdqlesaipysalaqalareellrqllde 88 
                 +v l G++Gv Ks l++++++ + ++  ++++gk  +       + l+ a +r++   +l  e
  KOO23440.1 383 NVCLMGDPGVAKSQLLKHIATIAPRA--VYTTGKGSSG------VGLTAAVTRDTATGELVLE 437
                 6789****************766655..6677777766......4566666666666666666 PP

  == domain 3  score: -1.9 bits;  conditional E-value: 2.8
      AAA_16  93 eleawrekleealaavpelagaea...srllellkrllallsrderplvlvlDdlq 145
                 el+  ++ + +++ +++e + +      ++++ l + l++ +++e+ l  ++D+ +
  KOO23440.1 657 ELRKRDDPISTVYHIIREHSQKTGlpaVHVADILPKVLSRGRTRED-LDHCIDEYE 711
                 2222222233333333333333334446666667777766666565.666666666 PP

>> Mg_chelatase_C  Magnesium chelatase, subunit ChlI C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.0   0.1       0.5   6.9e+02      36      67 ..      58      89 ..      36      92 .. 0.77
   2 ?   -1.1   0.0       2.2     3e+03       3      16 ..     321     334 ..     319     347 .. 0.85
   3 ?   -2.7   0.0       7.1   9.7e+03      34      59 ..     451     476 ..     444     488 .. 0.79
   4 ?   10.3   0.3   0.00061      0.84      55      90 ..     603     638 ..     561     640 .. 0.73

  Alignments for each domain:
  == domain 1  score: 1.0 bits;  conditional E-value: 0.5
  Mg_chelatase_C 36 evceldeeaeelleeaierlglsaRaydrilk 67
                     ++ ld+  ++l +e++e+++ +a+ y+r+l 
      KOO23440.1 58 VYVDLDDVHAALGDEFCEQMKSNAKRYQRLLA 89
                    4688999999999****************985 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 2.2
  Mg_chelatase_C   3 sSaevrerVaaAre 16 
                      S+e+r++V++A +
      KOO23440.1 321 PSEEMRQKVLEATR 334
                     69999999999975 PP

  == domain 3  score: -2.7 bits;  conditional E-value: 7.1
  Mg_chelatase_C  34 lrevceldeeaeelleeaierlglsa 59 
                     ++e+ +++e++++ ++e++e++++s 
      KOO23440.1 451 IDEFDKMEESDRTAIHEVMEQQTVSI 476
                     66777888899999999999988875 PP

  == domain 4  score: 10.3 bits;  conditional E-value: 0.00061
  Mg_chelatase_C  55 lglsaRaydrilkvArTiADLegseeieeehlaeAl 90 
                     +  saR +  il++++ +A L+ ++e+++e++ eA 
      KOO23440.1 603 GFTSARTLLAILRLSQALARLRCAHEVSREDIVEAR 638
                     4469******************************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (733 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       648  (0.0361426); expected 358.6 (0.02)
Passed bias filter:                      505  (0.0281667); expected 358.6 (0.02)
Passed Vit filter:                        52  (0.00290033); expected 17.9 (0.001)
Passed Fwd filter:                        13  (0.000725082); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 0.67u 0.31s 00:00:00.98 Elapsed: 00:00:00.47
# Mc/sec: 4681.37
//
Query:       KOO23441.1  [L=494]
Description: ATP-dependent RNA helicase dhh1 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      7e-44  149.7   0.0    9.7e-44  149.2   0.0    1.2  1  DEAD        DEAD/DEAH box helicase
    1.1e-27   96.6   0.2    3.9e-27   94.8   0.2    1.9  2  Helicase_C  Helicase conserved C-terminal domain


Domain annotation for each model (and alignments):
>> DEAD  DEAD/DEAH box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  149.2   0.0   1.1e-47   9.7e-44       2     174 ..     143     306 ..     142     308 .. 0.95

  Alignments for each domain:
  == domain 1  score: 149.2 bits;  conditional E-value: 1.1e-47
                 HHHHHHHHHHHTTCEEEEEESTTSSHHHHHHHHHHHHHHHSTTSTS-EEEEEESSHHHHHHHHHHHHHHTTTSTSEEEEEETTSSHHHHHHHHHTTCSE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD   2 diQaeaiplilgggdvlvaaeTGsGKTlaflipvlqivyetkgktgpkalivePtreLaeqtlnnlkkfkkyidlrvlliiggvaardqlskldngvdi 100
                 +iQ+e+ip++l g+d+l++a+ G+GKT+af+ipvl++     +k++ +a+i++PtreLa qt + ++ ++k+++l+v++ +gg++ ++++ +l n+v+i
  KOO23441.1 143 PIQEESIPIALAGRDILARAKNGTGKTAAFVIPVLEKAD--ASKPHIQAMILVPTRELALQTSQVCRDLGKHLGLEVMVSTGGSSLKEDILRLLNTVHI 239
                 8**********************************9994..69******************************************988888888***** PP

                 EEEEHHHHHHHHHCTSSHCTTEEEEEEETHHHHHHTTTHHHHHHHHHHSHHHCTTSTTTSEEEEEESSBSHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD 101 vvgtpgrlddllstgklnlsqvrflVlDEadrlldqgfsdfinrilnqlpqitcdgklqrqvivlSATlpkdvk 174
                 +++tpgrl+d+++++  ++s++++  lDEad+ll+++f++ +++++n +       +++rqv+++SAT+p +vk
  KOO23441.1 240 IIATPGRLLDMCEKEVASMSHCTMCCLDEADKLLSSEFQPLVEKLINYM-------PQERQVLLFSATFPVKVK 306
                 ************99999********************************.......56789********97776 PP

>> Helicase_C  Helicase conserved C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.0      0.43   3.9e+03      14      73 ..     184     243 ..     174     244 .. 0.58
   2 !   94.8   0.2   4.3e-31   3.9e-27       4     111 .]     344     450 ..     341     450 .. 0.89

  Alignments for each domain:
  == domain 1  score: -1.8 bits;  conditional E-value: 0.43
                 TTTSEEEEEESSHH.HHHH...HHHHHHHTTSTEEEESTTSTHHHHHHHHHHHHTTSSSEEEES CS
  Helicase_C  14 eeggkilifvntid.rlek...vklllekkgikvavlhgelpqnereeileqfnkgesdvLiat 73 
                 + + +++i v+t++  l+    ++ l ++ g++v v +g   ++ +e+il+  n  +++++iat
  KOO23441.1 184 KPHIQAMILVPTRElALQTsqvCRDLGKHLGLEVMVSTG--GSSLKEDILRLLN--TVHIIIAT 243
                 556688888999886443333445554444666666666..4555556666663..35566665 PP

  == domain 2  score: 94.8 bits;  conditional E-value: 4.3e-31
                 HHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHT...TSTEEEESTTSTHHHHHHHHHHHHTTSSSEEEESGGGTSSSTSTTESEEEESSSSSSHHH CS
  Helicase_C   4 eallellkleeeggkilifvntidrlekvklllekk...gikvavlhgelpqnereeileqfnkgesdvLiatdvaerGidipkvnlVinfdlprnvts 99 
                 ++l  l+ ++ + ++++if+n+++r+   +ll +k    g+++ ++h+++ q +r++++++f++g ++ L+++d   rGidip+vn+Vinfd+p++ ++
  KOO23441.1 344 HCLNTLF-SKLQINQSIIFCNSVNRV---ELLAKKItelGYSCFYIHAKMLQAHRNRVFHDFRNGLCRNLVSSDLFTRGIDIPSVNVVINFDFPKQAET 438
                 4455555.889999************...55544445579*********************************************************** PP

                 HHHHHTTSSSTT CS
  Helicase_C 100 yiqriGRtgRag 111
                 y +riGR gR+g
  KOO23441.1 439 YLHRIGRSGRFG 450
                 **********86 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (494 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       589  (0.0328518); expected 358.6 (0.02)
Passed bias filter:                      432  (0.024095); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.53u 0.28s 00:00:00.81 Elapsed: 00:00:00.45
# Mc/sec: 3308.62
//
Query:       KOO23442.1  [L=639]
Description: amy-1-associating protein expressed in testis 1 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    9.7e-52  175.1   5.4    9.7e-52  175.1   5.4    3.3  3  CFAP91         Cilia- and flagella-associated protein 91


Domain annotation for each model (and alignments):
>> CFAP91  Cilia- and flagella-associated protein 91
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  175.1   5.4   5.4e-56   9.7e-52       2     153 .]     102     253 ..     101     253 .. 0.99
   2 ?   -1.3   0.9      0.11     2e+03     101     130 ..     430     459 ..     412     486 .. 0.65
   3 ?   -0.6   6.5     0.067   1.2e+03      48     138 ..     497     584 ..     492     596 .. 0.78

  Alignments for each domain:
  == domain 1  score: 175.1 bits;  conditional E-value: 5.4e-56
      CFAP91   2 QTdYReseaQTdpYspeyvvkkgespelltLatltwgkgLpaglaEvemierarekraleaslpplsdaaslekrkkileelElkewaereeeiqelqe 100
                 Q++YR+s aQT+pY+p+ vv+ g++pe+ltL  lt+g gLpagl+Ev+mierar+kr++ea+lpp++d+ sl+ r+++++e+E+++w+ ree+i+e++e
  KOO23442.1 102 QSMYRDSMAQTNPYTPDHVVPTGTNPEVLTLTALTFGAGLPAGLNEVKMIERARAKREFEATLPPMTDEVSLSLRRTMMSEQEMRDWNVREEHIKEVHE 200
                 9************************************************************************************************** PP

      CFAP91 101 eRlellkkllkkreeeqeeanekrleklkeklekekekklekiekerikalRk 153
                 e+l + +  l++r e++e+   +r+e++++ +  ek+k++++i+++rikalRk
  KOO23442.1 201 EKLGIFDAQLRERMEAREKGWDERIEHMRQIKLTEKDKEISQIQRRRIKALRK 253
                 ****************************************************8 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 0.11
      CFAP91 101 eRlellkkllkkreeeqeeanekrleklke 130
                 +Rlel+++l  +++ +++e++e+ ++++ e
  KOO23442.1 430 RRLELIRELRIEEQLQKQEQAEDLVDEAEE 459
                 567777666666665555555555555444 PP

  == domain 3  score: -0.6 bits;  conditional E-value: 0.067
      CFAP91  48 vemierarekraleaslpplsdaaslekrkkileelElkewaereeeiqelqeeRlellkkllkkreeeqeeanekrleklkeklekekek 138
                 v + e+ r+kr+ e+s + +++ ++ ++r++++ e+ ++   +r +    l +   e++ +    +  ++++++e+r++kl++kle+++ +
  KOO23442.1 497 VRIAEHDRRKREAEESGRRVRELQE-RQRQQLIYEQVMAV--HRSSAASFLDDVCGEVISRDAATQAARESDVKESRIDKLVDKLEEKHSS 584
                 6677999*********999988866.55555555555444..7999999999999999999999999999999999999999998776544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (639 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1624  (0.0905795); expected 358.6 (0.02)
Passed bias filter:                      554  (0.0308997); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.65u 0.30s 00:00:00.95 Elapsed: 00:00:00.46
# Mc/sec: 4169.25
//
Query:       KOO23443.1  [L=605]
Description: enhancer of polycomb-like 2 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    0.00027   21.4   0.0    0.00071   20.0   0.0    1.7  1  EPL1      Enhancer of polycomb-like


Domain annotation for each model (and alignments):
>> EPL1  Enhancer of polycomb-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.0   0.0   3.9e-08   0.00071      79     156 ..      98     191 ..      37     192 .. 0.64

  Alignments for each domain:
  == domain 1  score: 20.0 bits;  conditional E-value: 3.9e-08
        EPL1  79 kkeelkLpkP............sfreferppssyirfsekseeeldd........eveYdMDEeDekWLeelnekrkkegvekisediFEivmdrlEk 156
                 ++  +++p P            sf      p++ +r+ + +e+  +         ++ +d+D    ++L  ln+  k+    +i e++FE ++dr+Ek
  KOO23443.1  98 QTRLKDIPVPisiaqvrvdgtnSFMM----PTEQMRSPAPTEQWPKStgefadddRIDWDIDPAGFRFLTLLNKGEKGYAGPPIEEAVFEKIIDRFEK 191
                 44445555556555555554444443....33333322222222222333333359*****************************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (605 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       452  (0.0252106); expected 358.6 (0.02)
Passed bias filter:                      312  (0.017402); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.57u 0.26s 00:00:00.83 Elapsed: 00:00:00.44
# Mc/sec: 4119.52
//
Query:       KOO23444.1  [L=196]
Description: zinc finger protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.3e-11   43.4   7.5    6.6e-11   41.9   7.5    1.9  1  zf-A20    A20-like zinc finger
    8.4e-08   32.3   9.3    8.4e-08   32.3   9.3    1.9  2  zf-AN1    AN1-like Zinc finger
  ------ inclusion threshold ------
       0.93    8.9  18.7        1.2    8.5  18.7    1.2  1  FAP       Fibronectin-attachment protein (FAP)
        1.2    8.1  15.2        2.1    7.3  15.2    1.3  1  DEC-1_N   DEC-1 protein, N-terminal region


Domain annotation for each model (and alignments):
>> zf-A20  A20-like zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.9   7.5   1.5e-14   6.6e-11       2      24 .]      16      38 ..      15      38 .. 0.96

  Alignments for each domain:
  == domain 1  score: 41.9 bits;  conditional E-value: 1.5e-14
      zf-A20  2 lCrngCGFyGnpatnglCSkCYk 24
                 C++gCGF+G++ t g+CSkCYk
  KOO23444.1 16 SCAAGCGFFGSAHTGGMCSKCYK 38
                5*********************8 PP

>> zf-AN1  AN1-like Zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   1.4       1.2   5.2e+03      14      21 ..      31      38 ..      17      39 .. 0.69
   2 !   32.3   9.3   1.9e-11   8.4e-08       1      39 [.     137     173 ..     137     174 .. 0.93

  Alignments for each domain:
  == domain 1  score: -2.3 bits;  conditional E-value: 1.2
      zf-AN1 14 fkCryCgk 21
                + C++C k
  KOO23444.1 31 GMCSKCYK 38
                56888865 PP

  == domain 2  score: 32.3 bits;  conditional E-value: 1.9e-11
      zf-AN1   1 CsfksCkkkdflp.fkCryCgkvFClkHrlpedHdCkkla 39 
                 C   +C++k+ l  f+C+ C+  FC++Hr+++ H+C ++ 
  KOO23444.1 137 CW--TCNRKIGLTgFQCK-CEFFFCAEHRYSDRHECAFDF 173
                 66..7*****9999****.*****************9985 PP

>> FAP  Fibronectin-attachment protein (FAP)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.5  18.7   0.00026       1.2      57     120 ..      48     109 ..      27     132 .. 0.60

  Alignments for each domain:
  == domain 1  score: 8.5 bits;  conditional E-value: 0.00026
         FAP  57 eaaaapaPaapapaPapadpnapeaaPapadPnapapppadPnapappavdPnapepgrvdnav 120
                 +aa +   a+p+p+P++++p+   a Pap +P ap   +a  +a + pav P a+ep++  +av
  KOO23444.1  48 AAAQPRVTATPTPPPPAPAPAPEVAIPAPEEPAAP--QTAAKEASPVPAVSPAAAEPAKFIEAV 109
                 22222233444443333333334456777777764..444444544456677777777766665 PP

>> DEC-1_N  DEC-1 protein, N-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.3  15.2   0.00046       2.1     112     148 ..      46      96 ..      30     119 .. 0.58

  Alignments for each domain:
  == domain 1  score: 7.3 bits;  conditional E-value: 0.00046
     DEC-1_N 112 llGaaapapalaa...apppapapvpddpapapaapqaa.............a 148
                 l    a  p ++a   +pppapap+p+   pap+ p a              +
  KOO23444.1  46 LAA--AAQPRVTAtptPPPPAPAPAPEVAIPAPEEPAAPqtaakeaspvpavS 96 
                 333..444444441115678999999877777666643322255555444333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (196 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       727  (0.0405488); expected 358.6 (0.02)
Passed bias filter:                      283  (0.0157845); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.41u 0.27s 00:00:00.68 Elapsed: 00:00:00.42
# Mc/sec: 1397.30
//
Query:       KOO23445.1  [L=528]
Description: glucosidase 2 subunit beta [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    6.3e-36  123.8   0.3    1.4e-35  122.6   0.3    1.6  1  PRKCSH-like     Glucosidase II beta subunit-like
    1.5e-26   92.9   0.0    2.3e-26   92.3   0.0    1.3  1  PRKCSH_1        Glucosidase II beta subunit-like protein
     0.0005   21.0   1.4     0.0005   21.0   1.4    2.5  2  PRKCSH          Glucosidase II beta subunit-like protein
  ------ inclusion threshold ------
      0.022   14.6   0.3      0.039   13.8   0.3    1.3  1  ATG27           Autophagy-related protein 27
      0.036   14.3   7.5       0.32   11.2   1.6    2.8  2  Ldl_recept_a    Low-density lipoprotein receptor domain class
       0.14   12.0   0.2       0.27   11.2   0.2    1.4  1  PDDEXK_9        PD-(D/E)XK nuclease superfamily


Domain annotation for each model (and alignments):
>> PRKCSH-like  Glucosidase II beta subunit-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  122.6   0.3   4.8e-39   1.4e-35      15     173 ..      21     176 ..       8     179 .. 0.85

  Alignments for each domain:
  == domain 1  score: 122.6 bits;  conditional E-value: 4.8e-39
  PRKCSH-like  15 avdelrGvapdklelykPdengnwkclnsseiklsfdqvnddycdcPdGsdePGtsaceng..kfycaneGyisgyiesfkvddgvcdydiccdGsde 110
                  a + +rGv   +   y+      + c + s   l   q+nddycdc dGsdePGtsac n+  +fycan+G+ ++y+ +  v dg+cd   ccdG+de
   KOO23445.1  21 AQQPVRGVPRSEWAAYTG---PTFACRDGSGS-LPIAQLNDDYCDCTDGSDEPGTSACANTggRFYCANKGFKPTYVRAGLVGDGICD---CCDGTDE 111
                  566677777666666653...34677766655.8899*********************87557*************************...******* PP

  PRKCSH-like 111 ..elgkcenkcaeiarkfeelleeankkvkkglkikeelllaakkkldelkkklkeledslkakk 173
                    + g c ++c +  + ++++   +  +v  gl+  +++ ++a+  + +   + + l+ sl  kk
   KOO23445.1 112 yaRPGACTDTCIQAGEAARAVAAATLSSVLGGLQKAQQWEAEAATNTGKWDSEIAALKVSLIEKK 176
                  77789**************************************9999888888888887776665 PP

>> PRKCSH_1  Glucosidase II beta subunit-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   92.3   0.0   7.6e-30   2.3e-26       6     152 ..     374     526 ..     369     528 .] 0.89

  Alignments for each domain:
  == domain 1  score: 92.3 bits;  conditional E-value: 7.6e-30
                 XXXXXXXXXXXXXXXXXXXXXXXXXXX.XX-TTTTT-EEEEEETT.EEEEEETTSEEEE.....TTEEEEEEEEEE..TTEEEEEE-SB-TTSSC-EEE CS
    PRKCSH_1   6 deaeedikkieseltklkeeleseyGldDiyRalegrevkekigd.YeYkvvllesvvq.....ddisiGefkkqe..gnklkyekGakCWnGPvRsai 96 
                  ea + i+++e+++ +l+ +   +yG++  +  l   + +  +g+ ++Y+++ +++  q     ++ +iG+++      ++lk+ +G++CWnGP Rs  
  KOO23445.1 374 REAMDAIDDLERQMRELESKKTVDYGPNGRFEPLSRECYTSALGGeWNYEICPFKNAAQkgqsgGSTTIGNWEGFAddYKTLKFTNGQHCWNGPARSLT 472
                 56778899****************************99999986549************99998899****9975421468****************** PP

                 EEEEE-SS-EEEEEEEEETTEEEEEEEEGGG--XXXXXXXXXXXXXXXXXXXXXXX CS
    PRKCSH_1  97 veveCGdenelvsvseaekCeYllkvkspaaCsnvllkkslaeeeslanfkiaekd 152
                 v +eCG e e++sv e+e C+Y+++ ++paaC + +     +e + la++++  +d
  KOO23445.1 473 VSLECGAESEVLSVDEPEVCKYTMRFRTPAACTQAQADAAKTELDALAPERV--HD 526
                 ********************************88888777778899999999..44 PP

>> PRKCSH  Glucosidase II beta subunit-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.3       2.7     8e+03      50      50 ..     162     162 ..     137     220 .. 0.59
   2 !   21.0   1.4   1.7e-07    0.0005       2      71 ..     410     453 ..     409     463 .. 0.75

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 2.7
                 E CS
      PRKCSH  50 a 50 
                 +
  KOO23445.1 162 D 162
                 1 PP

  == domain 2  score: 21.0 bits;  conditional E-value: 1.7e-07
                 -EEEEEE.TTEEEEEETTTEEEEE-EETTEE-S--EEEEEE..EEEEEEE-------.....---S--EEE CS
      PRKCSH   2 kCvsske.gwwtYelCygkkvrQfhepekekgksevvLGrfnkeehsewaekneaksystedeekqsnryi 71 
                 +C+ s   g+w+Ye+C++k+  Q+ +     ++ ++++G++                      e+  + y 
  KOO23445.1 410 ECYTSALgGEWNYEICPFKNAAQKGQ-----SGGSTTIGNW----------------------EGFADDYK 453
                 699777746****************9.....999*******......................33333344 PP

>> ATG27  Autophagy-related protein 27
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.3   1.3e-05     0.039     118     185 ..     446     513 ..     408     518 .. 0.68

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 1.3e-05
       ATG27 118 d..ekeglrlelk.gg.kygkkkqkaiieflCdekslkfksydeeeeeekdvlrlewktkyACekaekdkkd 185
                 +  +++  +l+++ g+  +++  +++++++ C  ++ ++ s de    e++ ++++++t++AC +a+ d  +
  KOO23445.1 446 EgfADDYKTLKFTnGQhCWNGPARSLTVSLEC-GAESEVLSVDEP---EVCKYTMRFRTPAACTQAQADAAK 513
                 2553344455665333478*************.666666666654...59**************99888765 PP

>> Ldl_recept_a  Low-density lipoprotein receptor domain class A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   1.6   0.00011      0.32       8      35 ..      41      69 ..      38      74 .. 0.84
   2 ?    5.5   0.4    0.0065        20      21      34 ..      98     111 ..      79     118 .. 0.85

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00011
                  EEETTSE.EEEGGGTTSSSTTSSSSGCCS CS
  Ldl_recept_a  8 fqCgsge.CIprswvCdgeaDCeDgSDEe 35
                  f C++g+   p     d+  DC DgSDE 
    KOO23445.1 41 FACRDGSgSLPIAQLNDDYCDCTDGSDEP 69
                  8899999889999999999*********3 PP

  == domain 2  score: 5.5 bits;  conditional E-value: 0.0065
                   TTSSSTTSSSSGCC CS
  Ldl_recept_a  21 vCdgeaDCeDgSDE 34 
                   v dg  DC Dg DE
    KOO23445.1  98 VGDGICDCCDGTDE 111
                   569999******** PP

>> PDDEXK_9  PD-(D/E)XK nuclease superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.2   8.9e-05      0.27       8      85 ..     135     213 ..     131     228 .. 0.74

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 8.9e-05
    PDDEXK_9   8 svfyalla.lslgyevksEdetnkGriDlllkpkektkkkiyifEfKylkekesekekae......ealeQikekgyaekykedg 85 
                 +++ ++l  l++ +++++E+ tn G  D ++      + k+ ++E K    ++++ eka+      ea +   ek++ae+ +++ 
  KOO23445.1 135 ATLSSVLGgLQKAQQWEAEAATNTGKWDSEIA-----ALKVSLIEKKA-AADAIQVEKAAaelresEARKEFLEKKAAEEAAKQA 213
                 566777888999********************.....789999**994.333333333334588888887777777777666654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (528 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1600  (0.0892409); expected 358.6 (0.02)
Passed bias filter:                      693  (0.0386525); expected 358.6 (0.02)
Passed Vit filter:                        72  (0.00401584); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.67u 0.29s 00:00:00.96 Elapsed: 00:00:00.45
# Mc/sec: 3508.21
//
Query:       KOO23446.1  [L=977]
Description: coatomer subunit beta-1-like protein, partial [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.5e-94  317.4   6.5    2.1e-94  317.0   6.5    1.1  1  Adaptin_N        Adaptin N terminal region
    9.2e-57  190.5   0.0    2.2e-56  189.3   0.0    1.7  1  Coatomer_b_Cpla  Coatomer beta subunit appendage platform
    7.8e-51  171.7   0.2    1.7e-50  170.5   0.2    1.6  1  Coatamer_beta_C  Coatomer beta C-terminal region
    3.9e-08   33.5   4.5      9e-07   29.1   0.7    2.5  2  Cnd1             non-SMC mitotic condensation complex subunit
    3.2e-05   24.3   0.2      0.036   14.4   0.0    4.3  4  HEAT_2           HEAT repeats
    0.00099   19.2   3.1        0.1   12.9   0.0    4.2  4  HEAT             HEAT repeat
     0.0049   17.0   0.0      0.019   15.1   0.0    2.1  1  Coatomer_g_Cpla  Coatomer subunit gamma-1 C-terminal appendag
     0.0098   16.0   2.8        4.4    7.4   0.4    3.4  4  ParcG            Parkin co-regulated protein
  ------ inclusion threshold ------
      0.047   13.1   4.2       0.68    9.3   0.9    2.9  3  DUF5578          Family of unknown function (DUF5578)
       0.21   11.1   3.0       0.39   10.3   0.5    2.2  2  Herpes_U44       Herpes virus U44 protein


Domain annotation for each model (and alignments):
>> Adaptin_N  Adaptin N terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  317.0   6.5   1.2e-97   2.1e-94       5     459 ..      57     510 ..      53     523 .. 0.95

  Alignments for each domain:
  == domain 1  score: 317.0 bits;  conditional E-value: 1.2e-97
                 CCHHHHHHCCSSS-SCHHHHHHHHHHHHHHHCT---GHHHHHHHCCCC.SS-CHHHHHHHHHHHHHCTTSCC.....HHCCCCHHHHHHCCSSSHHHHH CS
   Adaptin_N   5 iqqelaeilnsnkdddekkkeavkkliylialGedvsflffevvklva.skdfelKrlvYlylellaeesed.....lalLvtnslqkDlkdpnqlirg 97 
                 +++e++e l+s+  d ekk+  +kkli l+++Ge ++ l+++v+++   ++d+++K+l+ +y e++ +  +d     +++Lvtn l++Dl++pn+ irg
  KOO23446.1  57 NEDEIREDLESK--DTEKKIGGLKKLISLLLTGEAMPKLLMTVIRFCVpCDDHKIKKLLLVYYEVVDKHGPDgkmlpEMILVTNFLRNDLNHPNEWIRG 153
                 678999999999..********************************999************************************************** PP

                 HHHHHHCCC--CCCHHHHHHHHHHHHT-SSHHHHHHHHHHHHHCCCCCHHCCCCCHHHHHHHCT..T-SSHHHHHHHHHHHHHHHCCCCCCCHHHHHHH CS
   Adaptin_N  98 lALrvLssirvpelaedlapaikkllkdrspyvrkkAalailklykkdpdllrkqlveeikell..sdkdpgvvlaAvalleeikkndrlllkllpklv 194
                  +Lr ++++++ e++e l p +k+ l++r+++vr++A+la+ ++yk+ ++ll++   +e++e++  ++ dp+++++A+ +l +    d++  ++++ l+
  KOO23446.1 154 CTLRLMCKLKETEILEPLIPMMKSNLEHRHAFVRRNAVLAVSAIYKSFEHLLPD--GPELVEKVlqAEADPSCKRNAFLMLFQA---DQE--RAVHFLS 245
                 ****************************************************99..58888888799999**************...999..9****** PP

                 CCHHHHHHCS-HHHHHHHHHHHCC---SSHHHH..HHHHHHHCGGCGCSSCHHHHHHHHHCCHCCCCSTHHHCCHHCHHHHHH.SSCCTCHHHHHCHHH CS
   Adaptin_N 195 rrLcnllteldpwlqvkiiklltrlarqepeerskkellesllnllqssnnaVlletvnlivelapknelivlavnaLvrlls.skdenlryvaLrtll 292
                 ++++++  + ++ lq+++++l+++++r++p ++  +++++++l+l++ss++aV++e++ +++ l+++ ++i +a++ + +lls ++d+n+++++L++l+
  KOO23446.1 246 NNIDQV-ASYSDTLQLVVLELIRKVVRSNPNDK--SKYIRCILTLFNSSSTAVVYECASAMIALSSSVTAIRAAASSYTQLLSsQSDNNIKLIVLERLQ 341
                 ****98.9999**********************..66**********************************************999************* PP

                 HHHHHXXTTTTTTTCCCCSXXTTSXHHHHHHHHHHHCCCXXTTTHHHHHHHHHHHT.TSSXXHH....HHHHHHHHHHHHHHHSCCHHHHHHHHHHHHH CS
   Adaptin_N 293 kivkkepkavqhldlkifllktdddvsirlkaldlllklvdesNvkeivkeLkkyv.kevaded....fksklvkaIgrlaekfatdaewvldvllell 386
                  + kk+pk v++l ++i +  ++ + +ir+k+ld+ l+lv+   + e+++ Lkk+v k + d+d    ++++l+++I++ ++kf++ +++ +++l+++l
  KOO23446.1 342 DLKKKHPKVVTELIMDILRALASANLDIRKKTLDIILDLVTPGTIGEVMQVLKKEVvKTAEDGDksaeYRAMLITSIHKSTTKFPDAVSTAIPILMDFL 440
                 *******************************************************9655555558999******************************* PP

                 TTXXHHHHHHHHHHHHHHHHHSTTTSTTCHHHHCCTCCGXXSHHHHHHHHHHHHHTTTTXTT...HHHHHHCT CS
   Adaptin_N 387 slsgesvkdeivevirdliqkvpelheeiiekLaellekieseearaaaiWllGeygelvsntesasdllrsl 459
                  +s++  + +++  +r++++++p l++ + +kL+ ++ +i    + ++a+W++Gey++++++   ++  +++l
  KOO23446.1 441 GDSNQASALDVITYVREIVETYPHLRDDSMRKLLHAFPSIHASRIARVALWMIGEYCTEAQD---VALAFTTL 510
                 ************************************************************99...44444444 PP

>> Coatomer_b_Cpla  Coatomer beta subunit appendage platform
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  189.3   0.0   1.2e-59   2.2e-56       1     128 []     841     968 ..     841     968 .. 0.99

  Alignments for each domain:
  == domain 1  score: 189.3 bits;  conditional E-value: 1.2e-59
  Coatomer_b_Cpla   1 drnvvilndikidimdyikpakiseeeFremWaefeWEnkiavktkltdlkeyleelvkktnmklltpeeeleeeaeflsanlyaksvfgedal 94 
                      drn+v+lndi+idimdyi pa++s+  Fr mWaefeWEnk+a++t++td+ ++l ++vk+tnmk+ltp+++le++++fl+anlyaks+fgedal
       KOO23446.1 841 DRNCVVLNDIHIDIMDYIAPASCSDLAFRAMWAEFEWENKVAINTDITDVDTFLAHVVKSTNMKCLTPASALEGDSAFLAANLYAKSTFGEDAL 934
                      79******************************************************************************************** PP

  Coatomer_b_Cpla  95 anvsiekeeegkisgvvRiRsktqgialslgdki 128
                      +n+s+ek++ g++ g++RiRsktqgialslgdk+
       KOO23446.1 935 VNLSLEKRAGGSLCGYIRIRSKTQGIALSLGDKL 968
                      ********************************96 PP

>> Coatamer_beta_C  Coatomer beta C-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  170.5   0.2   9.6e-54   1.7e-50       2     140 .]     691     829 ..     690     829 .. 0.94

  Alignments for each domain:
  == domain 1  score: 170.5 bits;  conditional E-value: 9.6e-54
  Coatamer_beta_C   2 ddlisfrqlkekkelseeeeedl.veedlsqatgakkkeeefasklkkvvqLtGfsDpvYaEayvkvnqfDivLdvlivNqtketLqnltvela 94 
                      ddlis+rql+ + +++ + + d   ++ l++atga++ +e+fa++lk+v+qLtG+sD vYaEayv+v+++Di+Ld++++Nq+ket+ n ++ela
       KOO23446.1 691 DDLISVRQLRGRAADKGMMDLDDdDDAALNKATGADS-QEDFAQRLKRVTQLTGLSDAVYAEAYVTVQSYDIMLDLMLINQSKETMYNTCLELA 783
                      9**********99888877654437788888888777.899***************************************************** PP

  Coatamer_beta_C  95 tlgdlklvekpqsvtlaphdfakikatvkvsstetGvifGnivYdv 140
                      t+gdlkl+e+pq++tl+p ++++ika++kvsstetG++fG+ivYd+
       KOO23446.1 784 TVGDLKLCERPQTYTLKPGESKHIKANIKVSSTETGIVFGTIVYDT 829
                      ********************************************95 PP

>> Cnd1  non-SMC mitotic condensation complex subunit 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.1   0.7     5e-10     9e-07       2     159 ..     151     302 ..     150     305 .. 0.85
   2 !    5.5   0.2    0.0086        15      14      55 ..     346     387 ..     313     485 .. 0.66

  Alignments for each domain:
  == domain 1  score: 29.1 bits;  conditional E-value: 5e-10
        Cnd1   2 iRalairtlgcirvpnlveylvepLrkrLkDedpyVRktaaivvakLiln.dmvkekgflselakll.eDenprVvanalaalteiseksenaiynllp 98 
                 iR+  +r ++ ++ ++++e+l++ +++ L+ +++ VR++a+++v+ +++  +     g  + ++k l  + +p+   na ++l +  ++    ++++++
  KOO23446.1 151 IRGCTLRLMCKLKETEILEPLIPMMKSNLEHRHAFVRRNAVLAVSAIYKSfEHLLPDG-PELVEKVLqAEADPSCKRNAFLMLFQADQERAVHFLSNNI 248
                 9**********************************************76624555555.677777776789999******9999999998677777777 PP

        Cnd1  99 diisklsdalnecsewgqitilefLlsyipkdkqeaeslveklcprlqhansavvlaaikv 159
                 d + ++s          q ++le++ + + ++ ++  + +  +   ++ + +avv ++ ++
  KOO23446.1 249 DQVASYS-------DTLQLVVLELIRKVVRSNPNDKSKYIRCILTLFNSSSTAVVYECASA 302
                 7766666.......56899999999999999999999999999999999999999988766 PP

  == domain 2  score: 5.5 bits;  conditional E-value: 0.0086
        Cnd1  14 rvpnlveylvepLrkrLkDedpyVRktaaivvakLilndmvk 55 
                 + p++v +l+ ++ ++L   +  +Rk ++ +++ L++++++ 
  KOO23446.1 346 KHPKVVTELIMDILRALASANLDIRKKTLDIILDLVTPGTIG 387
                 356777777777777777777777777777777777666554 PP

>> HEAT_2  HEAT repeats
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.4   0.0     2e-05     0.036       4      81 ..     140     226 ..     137     233 .. 0.73
   2 ?   -0.6   0.0         1   1.8e+03      30      60 ..     278     308 ..     244     320 .. 0.69
   3 ?    0.9   0.1      0.33   5.9e+02       6      52 ..     322     374 ..     317     398 .. 0.74
   4 ?    2.4   0.0      0.12   2.1e+02      11      58 ..     405     458 ..     393     494 .. 0.72

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 2e-05
      HEAT_2   4 LlqalendpdpevrraairaLgrignpealpaLvell....ededpavRraaaeaLgaig......dpealpaLkellddddddvvRe 81 
                 L + l n+p++ +r  ++r + +++++e+l+ L++++    e+ ++ vRr+a+ a +ai       +p+  ++ ++ l+ + d+  ++
  KOO23446.1 140 LRNDL-NHPNEWIRGCTLRLMCKLKETEILEPLIPMMksnlEHRHAFVRRNAVLAVSAIYksfehlLPDGPELVEKVLQAEADPSCKR 226
                 66668.8999999****************888888884322445677**********9953444433666666666666666666555 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 1
      HEAT_2  30 pealpaLvellededpavRraaaeaLgaigd 60 
                  +++++++ l +++++av ++ a a+ a+ +
  KOO23446.1 278 SKYIRCILTLFNSSSTAVVYECASAMIALSS 308
                 3778999999999999999999988877754 PP

  == domain 3  score: 0.9 bits;  conditional E-value: 0.33
      HEAT_2   6 qalendpdpevrraairaLg..rignp....ealpaLvellededpavRraaa 52 
                 q+l++ +d +++  +++ L   ++++p    e++  ++++l +++ ++R+   
  KOO23446.1 322 QLLSSQSDNNIKLIVLERLQdlKKKHPkvvtELIMDILRALASANLDIRKKTL 374
                 78888999999999999999555566645555566677777778888887665 PP

  == domain 4  score: 2.4 bits;  conditional E-value: 0.12
      HEAT_2  11 dpdpevrraairaLg..rignp....ealpaLvellededpavRraaaeaLgai 58 
                 d++ e r++ i ++   + + p    +a+p+L ++l d++ a    ++++  +i
  KOO23446.1 405 DKSAEYRAMLITSIHksTTKFPdavsTAIPILMDFLGDSNQASALDVITYVREI 458
                 778888999999999552333344557799999999999998887777777666 PP

>> HEAT  HEAT repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   0.0       1.2   2.2e+03       4      25 ..     138     160 ..     135     164 .. 0.75
   2 !   12.9   0.0   5.7e-05       0.1       1      30 [.     171     200 ..     171     201 .. 0.94
   3 ?    3.4   0.1     0.064   1.1e+02       3      29 ..     282     308 ..     281     310 .. 0.90
   4 ?   -3.3   0.1       9.1   1.6e+04       5      24 ..     358     377 ..     356     381 .. 0.75

  Alignments for each domain:
  == domain 1  score: -0.6 bits;  conditional E-value: 1.2
                 HHHHH.HT-SSHHHHHHHHHHHH CS
        HEAT   4 lllkl.lsDpspeVReaAakaLg 25 
                  +l++ l++p+  +R  +++ ++
  KOO23446.1 138 NFLRNdLNHPNEWIRGCTLRLMC 160
                 5666769********88877666 PP

  == domain 2  score: 12.9 bits;  conditional E-value: 5.7e-05
                 HHHHHHHHHT-SSHHHHHHHHHHHHHHHHC CS
        HEAT   1 llPlllkllsDpspeVReaAakaLgalaev 30 
                 l+P++ ++l++ +++VR++A++a+ a+++ 
  KOO23446.1 171 LIPMMKSNLEHRHAFVRRNAVLAVSAIYKS 200
                 7999***********************985 PP

  == domain 3  score: 3.4 bits;  conditional E-value: 0.064
                 HHHHHHHT-SSHHHHHHHHHHHHHHHH CS
        HEAT   3 PlllkllsDpspeVReaAakaLgalae 29 
                  ++l+l +++s  V + +a a+ al++
  KOO23446.1 282 RCILTLFNSSSTAVVYECASAMIALSS 308
                 6899*9****************99987 PP

  == domain 4  score: -3.3 bits;  conditional E-value: 9.1
                 HHHHHT-SSHHHHHHHHHHH CS
        HEAT   5 llkllsDpspeVReaAakaL 24 
                 +l++l + + ++R+ ++  +
  KOO23446.1 358 ILRALASANLDIRKKTLDII 377
                 57778899999999887665 PP

>> Coatomer_g_Cpla  Coatomer subunit gamma-1 C-terminal appendage platform
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.0   1.1e-05     0.019       2     108 ..     856     961 ..     855     967 .. 0.90

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 1.1e-05
                      GGEEE---S..-HHHHHHHH-STT-EEEEEEE.SS---HHHHHHHHHHHHT-EE-TTTT---SS-SEEEEEEEEEETTS-EEEEEEEEEE..SS CS
  Coatomer_g_Cpla   2 Dyikpvavs..nFeaaWeeleseaeavetfaL.ssvksleeavdkliellgmqplegsdkvpenassHtLklaGkfvggekvlvrarlalsssk 92 
                      Dyi p++ s   F+a+W e e e    +++a+ + ++++ +   +++++++m+ l      + +++    +l+ k+  ge+ lv+++l + +++
       KOO23446.1 856 DYIAPASCSdlAFRAMWAEFEWE----NKVAInTDITDVDTFLAHVVKSTNMKCLTPASALEGDSAFLAANLYAKSTFGEDALVNLSLEKRAGG 945
                      9*******9999*******9994....33344347799******************99999999999*************************** PP

                      .EEEEEEEEESSHHHH CS
  Coatomer_g_Cpla  93 gvtlkltvRsedeeva 108
                      +    + +Rs+++ +a
       KOO23446.1 946 SLCGYIRIRSKTQGIA 961
                      ***********99887 PP

>> ParcG  Parkin co-regulated protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.0       1.4   2.5e+03      85     119 ..      61      95 ..      59     104 .. 0.82
   2 !    6.3   0.0    0.0051       9.2      77     140 ..     129     193 ..     118     218 .. 0.83
   3 ?   -3.0   0.0       3.8   6.8e+03      82     128 ..     281     326 ..     276     334 .. 0.68
   4 !    7.4   0.4    0.0025       4.4      70     116 ..     343     388 ..     328     402 .. 0.82

  Alignments for each domain:
  == domain 1  score: -1.6 bits;  conditional E-value: 1.4
       ParcG  85 lkeaLntrdeeviesaLkvlqklvkaseligeaLv 119
                 ++e+L+++d+e  +  Lk l  l+ ++e + + L+
  KOO23446.1  61 IREDLESKDTEKKIGGLKKLISLLLTGEAMPKLLM 95 
                 899**************999999888777666665 PP

  == domain 2  score: 6.3 bits;  conditional E-value: 0.0051
       ParcG  77 vlpklilp...lkeaLntrdeeviesaLkvlqklvkaseligeaLvpyyrqlLpvlnlfknkrvnlg 140
                 +lp++il    l+++Ln+ +e +   +L+++ kl   ++ i e L+p ++  L +  +f +++  l+
  KOO23446.1 129 MLPEMILVtnfLRNDLNHPNEWIRGCTLRLMCKL--KETEILEPLIPMMKSNLEHRHAFVRRNAVLA 193
                 566666644449**********************..888999**********999999988886554 PP

  == domain 3  score: -3.0 bits;  conditional E-value: 3.8
       ParcG  82 ilplkeaLntrdeeviesaLkvlqklvkaseligeaLvpyyrqlLpv 128
                 i  + + +n+++++v+  + +++  l ++ + i++a  + y qlL  
  KOO23446.1 281 IRCILTLFNSSSTAVVYECASAMIALSSSVTAIRAAASS-YTQLLSS 326
                 566666778888888888888888885555666655554.5566665 PP

  == domain 4  score: 7.4 bits;  conditional E-value: 0.0025
       ParcG  70 geekilpvlpklilplkeaLntrdeeviesaLkvlqklvkaselige 116
                  ++k  +v+ +li+ + +aL + + ++ +++L+++  lv+   +ige
  KOO23446.1 343 LKKKHPKVVTELIMDILRALASANLDIRKKTLDIILDLVTP-GTIGE 388
                 566777899*****************************764.45665 PP

>> DUF5578  Family of unknown function (DUF5578)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.7   0.1      0.04        71     196     250 ..     253     307 ..     242     318 .. 0.69
   2 ?    9.3   0.9   0.00038      0.68     192     252 ..     322     383 ..     315     400 .. 0.79
   3 ?    0.2   0.0      0.22     4e+02     103     220 ..     387     501 ..     383     513 .. 0.70

  Alignments for each domain:
  == domain 1  score: 2.7 bits;  conditional E-value: 0.04
     DUF5578 196 csspkaqqlalqtlrvvqeivkeakpsivepllelLkslhlevqyeaielikelm 250
                 + s + q ++l+ +r v ++ ++ k++ + ++l+l +s  + v ye  + + +l 
  KOO23446.1 253 SYSDTLQLVVLELIRKVVRSNPNDKSKYIRCILTLFNSSSTAVVYECASAMIALS 307
                 4555556666677777777777777777777777777777777777666665554 PP

  == domain 2  score: 9.3 bits;  conditional E-value: 0.00038
     DUF5578 192 allacsspkaqqlal.qtlrvvqeivkeakpsivepllelLkslhlevqyeaielikelmst 252
                  ll+++s +  +l + + l+ ++++ +++ + ++  +l +L+s++l+++++++++i +l++ 
  KOO23446.1 322 QLLSSQSDNNIKLIVlERLQDLKKKHPKVVTELIMDILRALASANLDIRKKTLDIILDLVTP 383
                 567788887777654499999999***********************************864 PP

  == domain 3  score: 0.2 bits;  conditional E-value: 0.22
     DUF5578 103 GGvltlleilglkqlkeedkaealk..llqlvanaGrkyKEliCEsygvravaeclakskseetqeeaqklleslaegnPkyqkqvykgliallacssp 199
                 G v+ +l+    k++++ dk    +  l++ + ++ +k+ + +  s  +  + ++l  s+++++ + + + +++++e  P++++   + l+   +  s 
  KOO23446.1 387 GEVMQVLKKEVVKTAEDGDKSAEYRamLITSIHKSTTKFPDAV--STAIPILMDFLGDSNQASALD-VITYVREIVETYPHLRDDSMRKLLHAFP--SI 480
                 5555555555566666777765544226777888888888877..455666788888888777665.4567788888888888888888888887..78 PP

     DUF5578 200 kaqqlalqtlrvvqeivkeak 220
                 +a ++a  +l ++ e + ea+
  KOO23446.1 481 HASRIARVALWMIGEYCTEAQ 501
                 888888888877777776665 PP

>> Herpes_U44  Herpes virus U44 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.3   0.1      0.25   4.4e+02     114     152 ..     301     341 ..     291     347 .. 0.82
   2 ?   10.3   0.5   0.00022      0.39     106     184 ..     349     431 ..     341     438 .. 0.87

  Alignments for each domain:
  == domain 1  score: 0.3 bits;  conditional E-value: 0.25
  Herpes_U44 114 ntliala..vgevelsdsalqqLLnkrateqvtLmevekla 152
                  ++ial+  v+ +  + s++ qLL  ++ +++ L  +e+l+
  KOO23446.1 301 SAMIALSssVTAIRAAASSYTQLLSSQSDNNIKLIVLERLQ 341
                 578888622567888999*****************999987 PP

  == domain 2  score: 10.3 bits;  conditional E-value: 0.00022
  Herpes_U44 106 qamqsvvwntlialavgevelsdsalqqLLnkra....teqvtLmeveklataievDnskrlaveisnilseetqaLPeavte 184
                 + +   +++ l ala +++++ +++l+ +L+       +e + +   e + ta + D+s ++   +  ++++ t  +P+av+ 
  KOO23446.1 349 KVVTELIMDILRALASANLDIRKKTLDIILDLVTpgtiGEVMQVLKKEVVKTAEDGDKSAEYRAMLITSIHKSTTKFPDAVST 431
                 5677899***********************9754222289999999999*******************************975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (977 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       679  (0.0378716); expected 358.6 (0.02)
Passed bias filter:                      504  (0.0281109); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.77u 0.28s 00:00:01.05 Elapsed: 00:00:00.44
# Mc/sec: 6653.20
//
Query:       KOO23447.1  [L=477]
Description: hypothetical protein Ctob_004055 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.4e-65  215.6  27.0    5.9e-09   36.4   0.5    7.5  7  WD40         WD domain, G-beta repeat
    1.9e-22   79.7   6.8     0.0083   15.1   0.0    7.1  7  Ge1_WD40     WD40 region of Ge1, enhancer of mRNA-decapping p
    1.8e-18   66.6   6.8      0.062   13.6   0.0    6.6  7  ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain
    5.5e-14   51.7   1.7        1.2    9.1   0.0    7.8  8  PD40         WD40-like Beta Propeller Repeat
    4.8e-12   45.0   0.0     0.0028   16.1   0.0    4.5  4  Frtz         WD repeat-containing and planar cell polarity ef
      5e-12   46.1   1.2     0.0087   16.0   0.0    3.9  4  eIF2A        Eukaryotic translation initiation factor eIF2A
    9.2e-08   32.1   0.5       0.06   13.4   0.0    5.2  6  BBS2_Mid     Ciliary BBSome complex subunit 2, middle region
    2.5e-06   27.0   7.4          3    7.1   0.1    5.7  6  Nbas_N       Neuroblastoma-amplified sequence, N terminal
    6.8e-06   25.4   0.6       0.55    9.3   0.1    4.1  5  DUF1513      Protein of unknown function (DUF1513)
     0.0002   21.4   0.0         12    6.1   0.0    5.9  7  DCX          Doublecortin
    0.00022   21.4   0.2          4    7.6   0.0    4.7  6  Plk4_PB1     Polo-like Kinase 4 Polo Box 1
    0.00054   20.2   9.3         17    5.6   0.0    6.6  7  Dfp1_Him1_M  Dfp1/Him1, central region
     0.0017   17.0   2.1       0.59    8.6   0.1    3.6  4  Utp8         Utp8 family
     0.0057   16.1   6.4        9.2    5.7   0.1    5.6  7  rOmpB        Rickettsia outer membrane protein B
  ------ inclusion threshold ------
       0.12   12.4   4.3         57    3.8   0.0    5.2  6  WD40_3       WD domain, G-beta repeat


Domain annotation for each model (and alignments):
>> WD40  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.7   0.6   2.8e-09   3.4e-06       8      38 .]     139     170 ..     131     170 .. 0.83
   2 !   35.8   0.2   7.5e-12   8.9e-09       8      37 ..     182     212 ..     175     213 .. 0.88
   3 !   31.7   0.1   1.6e-10   1.9e-07       8      38 .]     225     256 ..     219     256 .. 0.90
   4 !   35.1   0.4   1.3e-11   1.6e-08       9      38 .]     269     299 ..     262     299 .. 0.89
   5 !   31.4   0.1   1.9e-10   2.3e-07       8      38 .]     311     342 ..     304     342 .. 0.88
   6 !   32.3   0.0   9.9e-11   1.2e-07       8      38 .]     354     385 ..     347     385 .. 0.91
   7 !   36.4   0.5   4.9e-12   5.9e-09       9      38 .]     398     428 ..     391     428 .. 0.88

  Alignments for each domain:
  == domain 1  score: 27.7 bits;  conditional E-value: 2.8e-09
                 ESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40   8 tGH.ssvtslafspdgawlasGsdDgtvriWd 38 
                 ++H   + s+ fspdg+ ++sGs Dgt+++Wd
  KOO23447.1 139 KAHsVAIISVVFSPDGTKIVSGSIDGTIKVWD 170
                 57843366999********************9 PP

  == domain 2  score: 35.8 bits;  conditional E-value: 7.5e-12
                 ESS.SSEEEEEEETTSSEEEEEETTSEEEEE CS
        WD40   8 tGH.ssvtslafspdgawlasGsdDgtvriW 37 
                  +H ++++s+afspdg+ ++sGs+D+t+++W
  KOO23447.1 182 NAHsDCINSVAFSPDGTKIVSGSWDKTIKVW 212
                 489555************************* PP

  == domain 3  score: 31.7 bits;  conditional E-value: 1.6e-10
                 ESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40   8 tGH.ssvtslafspdgawlasGsdDgtvriWd 38 
                  +H s v s+afspd + ++sGs Dgt+++Wd
  KOO23447.1 225 NAHsSYVMSVAFSPDRTKIVSGSADGTIKVWD 256
                 489555*************************9 PP

  == domain 4  score: 35.1 bits;  conditional E-value: 1.3e-11
                 SSSS.EEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40   9 GHss.vtslafspdgawlasGsdDgtvriWd 38 
                 +Hs+ v s+afspdg+ ++sGs+Dgt+++Wd
  KOO23447.1 269 AHSHwVMSVAFSPDGTKIVSGSRDGTIKVWD 299
                 78555*************************9 PP

  == domain 5  score: 31.4 bits;  conditional E-value: 1.9e-10
                 ESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40   8 tGH.ssvtslafspdgawlasGsdDgtvriWd 38 
                  +H ++ ts+afsp+g+ ++sGs D+t+++Wd
  KOO23447.1 311 NAHsQHLTSVAFSPHGTKIVSGSGDKTIKVWD 342
                 589777****************99*******9 PP

  == domain 6  score: 32.3 bits;  conditional E-value: 9.9e-11
                 ESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40   8 tGH.ssvtslafspdgawlasGsdDgtvriWd 38 
                  +H + + s+afspdg+ ++sG  D+t+++Wd
  KOO23447.1 354 NAHrNYIESVAFSPDGTKIVSGAHDKTIKVWD 385
                 489999****************88*******9 PP

  == domain 7  score: 36.4 bits;  conditional E-value: 4.9e-12
                 SS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40   9 GH.ssvtslafspdgawlasGsdDgtvriWd 38 
                 +H   v+s+afspdg+ ++sGsdDgt+++Wd
  KOO23447.1 398 AHhHYVRSVAFSPDGTKIVSGSDDGTIKVWD 428
                 66335*************************9 PP

>> Ge1_WD40  WD40 region of Ge1, enhancer of mRNA-decapping protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.4   0.1   2.3e-05     0.028     184     215 ..     138     170 ..     125     175 .. 0.88
   2 !    9.3   0.0   0.00041      0.49     185     215 ..     182     213 ..     172     226 .. 0.88
   3 !   11.2   0.0   0.00011      0.13     186     215 ..     226     256 ..     213     267 .. 0.85
   4 !   15.1   0.0   6.9e-06    0.0083     185     215 ..     268     299 ..     257     310 .. 0.82
   5 !    6.6   0.0    0.0027       3.3     183     216 ..     309     343 ..     299     357 .. 0.83
   6 !    7.6   0.0    0.0014       1.6     188     215 ..     358     385 ..     348     396 .. 0.86
   7 !   14.1   0.0   1.4e-05     0.017     186     217 ..     399     430 ..     388     441 .. 0.85

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 2.3e-05
    Ge1_WD40 184 ieehs.liveaafspdGtalatasedGevkffq 215
                  + hs  i++ +fspdGt +   s dG++k + 
  KOO23447.1 138 TKAHSvAIISVVFSPDGTKIVSGSIDGTIKVWD 170
                 566776899*********************996 PP

  == domain 2  score: 9.3 bits;  conditional E-value: 0.00041
    Ge1_WD40 185 eehs.liveaafspdGtalatasedGevkffq 215
                 + hs +i + afspdGt +   s d ++k + 
  KOO23447.1 182 NAHSdCINSVAFSPDGTKIVSGSWDKTIKVWE 213
                 56776999*********************985 PP

  == domain 3  score: 11.2 bits;  conditional E-value: 0.00011
    Ge1_WD40 186 ehs.liveaafspdGtalatasedGevkffq 215
                  hs  +++ afspd t +   s+dG++k + 
  KOO23447.1 226 AHSsYVMSVAFSPDRTKIVSGSADGTIKVWD 256
                 45448***********************996 PP

  == domain 4  score: 15.1 bits;  conditional E-value: 6.9e-06
    Ge1_WD40 185 eehs.liveaafspdGtalatasedGevkffq 215
                 + hs  +++ afspdGt +   s dG++k + 
  KOO23447.1 268 NAHShWVMSVAFSPDGTKIVSGSRDGTIKVWD 299
                 55665799*********************997 PP

  == domain 5  score: 6.6 bits;  conditional E-value: 0.0027
    Ge1_WD40 183 kieehs.liveaafspdGtalatasedGevkffqv 216
                 k + hs ++++ afsp Gt +   s d ++k + +
  KOO23447.1 309 KTNAHSqHLTSVAFSPHGTKIVSGSGDKTIKVWDL 343
                 556677689**********************9976 PP

  == domain 6  score: 7.6 bits;  conditional E-value: 0.0014
    Ge1_WD40 188 sliveaafspdGtalatasedGevkffq 215
                   i + afspdGt +   ++d ++k + 
  KOO23447.1 358 NYIESVAFSPDGTKIVSGAHDKTIKVWD 385
                 468899*******************985 PP

  == domain 7  score: 14.1 bits;  conditional E-value: 1.4e-05
    Ge1_WD40 186 ehsliveaafspdGtalatasedGevkffqvy 217
                 +h  + + afspdGt +   s dG++k + + 
  KOO23447.1 399 HHHYVRSVAFSPDGTKIVSGSDDGTIKVWDMV 430
                 45578999********************9875 PP

>> ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.6   0.0   5.2e-05     0.062      26      89 ..     119     193 ..     107     196 .. 0.83
   2 !    9.1   0.1    0.0014       1.6      29      81 ..     168     228 ..     167     234 .. 0.79
   3 !   12.6   0.1   0.00011      0.13      28      78 ..     210     268 ..     207     275 .. 0.83
   4 !   12.9   0.0   8.3e-05     0.099      36      89 ..     269     322 ..     265     325 .. 0.81
   5 ?    6.2   0.0     0.011        13      34      76 ..     310     352 ..     301     362 .. 0.83
   6 !   12.4   0.1   0.00012      0.15      28      75 ..     339     394 ..     335     401 .. 0.85
   7 !   13.2   0.0   6.9e-05     0.083      33      76 ..     395     438 ..     390     456 .. 0.76

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 5.2e-05
  ANAPC4_WD40  26 gqrvwtl...........eedkedsevrsLaWkpdgklLavaysdgevrlldaesgkvvhslsvksekavtclgW 89 
                  +++++             ++++++  + s+ ++pdg+ ++ +  dg++++ d  + +++++ + +++++++++ +
   KOO23447.1 119 WEKIFAPmiamlincvadKTKAHSVAIISVVFSPDGTKIVSGSIDGTIKVWDFDKLELLSEKTNAHSDCINSVAF 193
                  5666655566666666666788889999******************************99988888889998877 PP

  == domain 2  score: 9.1 bits;  conditional E-value: 0.0014
  ANAPC4_WD40  29 vwtl........eedkedsevrsLaWkpdgklLavaysdgevrlldaesgkvvhslsvkse 81 
                  vw++        ++++++  ++s+a++pdg+ ++ +  d ++++ ++ + + +++ + +++
   KOO23447.1 168 VWDFdklellseKTNAHSDCINSVAFSPDGTKIVSGSWDKTIKVWESGKLEFLSEKTNAHS 228
                  66666666666677889999************************99998888876655544 PP

  == domain 3  score: 12.6 bits;  conditional E-value: 0.00011
  ANAPC4_WD40  28 rvwtl........eedkedsevrsLaWkpdgklLavaysdgevrlldaesgkvvhslsv 78 
                  +vw+         ++++++s v s+a++pd + ++ + +dg++++ d+ + +++++ + 
   KOO23447.1 210 KVWESgkleflseKTNAHSSYVMSVAFSPDRTKIVSGSADGTIKVWDSDKLEMLSEKTN 268
                  566666677777677889999*****************************999987554 PP

  == domain 4  score: 12.9 bits;  conditional E-value: 8.3e-05
  ANAPC4_WD40  36 kedsevrsLaWkpdgklLavaysdgevrlldaesgkvvhslsvksekavtclgW 89 
                  ++++ v s+a++pdg+ ++ +  dg++++ d+ + + +++ + +++++ t++ +
   KOO23447.1 269 AHSHWVMSVAFSPDGTKIVSGSRDGTIKVWDSAKLEQLSEKTNAHSQHLTSVAF 322
                  5667799************************99988877766665556777766 PP

  == domain 5  score: 6.2 bits;  conditional E-value: 0.011
  ANAPC4_WD40  34 edkedsevrsLaWkpdgklLavaysdgevrlldaesgkvvhsl 76 
                  +++++++ +s+a++p g+ ++ +  d ++++ d  + +++++ 
   KOO23447.1 310 TNAHSQHLTSVAFSPHGTKIVSGSGDKTIKVWDLGKLELLSEK 352
                  56788999************************99888887765 PP

  == domain 6  score: 12.4 bits;  conditional E-value: 0.00012
  ANAPC4_WD40  28 rvwtl........eedkedsevrsLaWkpdgklLavaysdgevrlldaesgkvvhs 75 
                  +vw+l        +++++ + ++s+a++pdg+ ++ + +d ++++ d+ + +++++
   KOO23447.1 339 KVWDLgklellseKTNAHRNYIESVAFSPDGTKIVSGAHDKTIKVWDSDKLELLSE 394
                  677777777777678889999***************************99988865 PP

  == domain 7  score: 13.2 bits;  conditional E-value: 6.9e-05
  ANAPC4_WD40  33 eedkedsevrsLaWkpdgklLavaysdgevrlldaesgkvvhsl 76 
                  ++d++ + vrs+a++pdg+ ++ + +dg++++ d+ +     +l
   KOO23447.1 395 KTDAHHHYVRSVAFSPDGTKIVSGSDDGTIKVWDMVKWSRKDHL 438
                  56788999************************998775555554 PP

>> PD40  WD40-like Beta Propeller Repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.1       2.1   2.5e+03      15      19 ..      94      98 ..      93      98 .. 0.92
   2 !    6.3   0.0    0.0079       9.4      15      24 ..     149     158 ..     144     158 .. 0.85
   3 !    7.1   0.0    0.0044       5.3      15      24 ..     192     201 ..     188     201 .. 0.88
   4 ?    4.0   0.0     0.043        51      11      24 ..     231     244 ..     225     244 .. 0.79
   5 !    7.7   0.0     0.003       3.5      13      24 ..     276     287 ..     269     287 .. 0.85
   6 ?   -0.5   0.0       1.1   1.3e+03       8      24 ..     314     330 ..     311     330 .. 0.80
   7 !    9.1   0.0     0.001       1.2      10      24 ..     359     373 ..     353     373 .. 0.84
   8 !    7.0   0.0    0.0047       5.6      15      24 ..     407     416 ..     404     416 .. 0.88

  Alignments for each domain:
  == domain 1  score: -1.4 bits;  conditional E-value: 2.1
                EE-TT CS
        PD40 15 sfSPD 19
                ++SPD
  KOO23447.1 94 TWSPD 98
                8***9 PP

  == domain 2  score: 6.3 bits;  conditional E-value: 0.0079
                 EE-TTSSEEE CS
        PD40  15 sfSPDGkrla 24 
                  fSPDG++++
  KOO23447.1 149 VFSPDGTKIV 158
                 7*******96 PP

  == domain 3  score: 7.1 bits;  conditional E-value: 0.0044
                 EE-TTSSEEE CS
        PD40  15 sfSPDGkrla 24 
                 +fSPDG++++
  KOO23447.1 192 AFSPDGTKIV 201
                 8*******96 PP

  == domain 4  score: 4.0 bits;  conditional E-value: 0.043
                 EEEEEE-TTSSEEE CS
        PD40  11 egaPsfSPDGkrla 24 
                  ++ +fSPD ++++
  KOO23447.1 231 VMSVAFSPDRTKIV 244
                 56789******996 PP

  == domain 5  score: 7.7 bits;  conditional E-value: 0.003
                 EEEE-TTSSEEE CS
        PD40  13 aPsfSPDGkrla 24 
                 + +fSPDG++++
  KOO23447.1 276 SVAFSPDGTKIV 287
                 569*******96 PP

  == domain 6  score: -0.5 bits;  conditional E-value: 1.1
                 SS.EEEEEE-TTSSEEE CS
        PD40   8 pgnegaPsfSPDGkrla 24 
                 +++ ++ +fSP G++++
  KOO23447.1 314 SQHLTSVAFSPHGTKIV 330
                 56668889***999996 PP

  == domain 7  score: 9.1 bits;  conditional E-value: 0.001
                 .EEEEEE-TTSSEEE CS
        PD40  10 negaPsfSPDGkrla 24 
                 ++++ +fSPDG++++
  KOO23447.1 359 YIESVAFSPDGTKIV 373
                 67889********96 PP

  == domain 8  score: 7.0 bits;  conditional E-value: 0.0047
                 EE-TTSSEEE CS
        PD40  15 sfSPDGkrla 24 
                 +fSPDG++++
  KOO23447.1 407 AFSPDGTKIV 416
                 8*******96 PP

>> Frtz  WD repeat-containing and planar cell polarity effector protein Fritz
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.8   0.0    0.0031       3.7     258     290 ..     141     173 ..     125     213 .. 0.72
   2 !   16.1   0.0   2.3e-06    0.0028     246     329 ..     215     301 ..     203     309 .. 0.80
   3 !    9.2   0.0   0.00029      0.34     262     329 ..     274     344 ..     267     357 .. 0.77
   4 !   14.9   0.0   5.3e-06    0.0063     261     343 ..     359     444 ..     344     455 .. 0.81

  Alignments for each domain:
  == domain 1  score: 5.8 bits;  conditional E-value: 0.0031
        Frtz 258 lraqvislafnpdedkLllGceDssviLydeer 290
                     +is+ f+pd  k++ G++D+++ ++d ++
  KOO23447.1 141 HSVAIISVVFSPDGTKIVSGSIDGTIKVWDFDK 173
                 556799********************9999764 PP

  == domain 2  score: 16.1 bits;  conditional E-value: 2.3e-06
        Frtz 246 nklqrvavtsiPlraqvislafnpdedkLllGceDssviLydeerkitklvkaevvPs...liswhpdsaillvasergelqifDla 329
                 +kl+  +  +    + v+s+af+pd+ k++ G+ D+++ ++d+++   +  k++   +    +++ pd++ ++ +s  g ++++D a
  KOO23447.1 215 GKLEFLSEKTNAHSSYVMSVAFSPDRTKIVSGSADGTIKVWDSDKLEMLSEKTNAHSHwvmSVAFSPDGTKIVSGSRDGTIKVWDSA 301
                 5555555555666789**************************997666666777776622256899******************977 PP

  == domain 3  score: 9.2 bits;  conditional E-value: 0.00029
        Frtz 262 vislafnpdedkLllGceDssviLydeerkitklv.kaevvP...sliswhpdsaillvasergelqifDla 329
                 v+s+af+pd  k++ G++D+++ ++d+ + + +l  k++      + +++ p+++ ++ +s    ++++Dl 
  KOO23447.1 274 VMSVAFSPDGTKIVSGSRDGTIKVWDSAK-LEQLSeKTNAHSqhlTSVAFSPHGTKIVSGSGDKTIKVWDLG 344
                 899***********************875.333332554444111457889999999999999999999985 PP

  == domain 4  score: 14.9 bits;  conditional E-value: 5.3e-06
        Frtz 261 qvislafnpdedkLllGceDssviLydeerkitklvkaevvPslis...whpdsaillvasergelqifDlaLspiriqllsedve 343
                  + s+af+pd  k++ G++D+++ ++d+++   +  k++   ++++   + pd++ ++ +s+ g ++++D+   + +  l+ +d++
  KOO23447.1 359 YIESVAFSPDGTKIVSGAHDKTIKVWDSDKLELLSEKTDAHHHYVRsvaFSPDGTKIVSGSDDGTIKVWDMVKWSRKDHLMFNDTT 444
                 57899**********************997666666888888875422289********************877766666666655 PP

>> eIF2A  Eukaryotic translation initiation factor eIF2A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.1   0.0   0.00011      0.13     105     161 ..     147     203 ..     129     217 .. 0.74
   2 !   12.3   0.1   9.8e-05      0.12      64     159 ..     190     287 ..     188     291 .. 0.77
   3 !   15.8   0.1   8.1e-06    0.0097      64     160 ..     233     331 ..     226     340 .. 0.75
   4 !   16.0   0.0   7.3e-06    0.0087      75     169 ..     328     426 ..     319     448 .. 0.73

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 0.00011
                 EEEE-TTSSEEEEE-TTSSS-EEEEEETTTTEEEEE...EE-TT--EEEE-TTSSEEEEE CS
       eIF2A 105 tiffspkgklvllaGfgnlaGeleiwdvkkkkkiak...aeaanatlvewspdgryvlTa 161
                 +++fsp g+ ++ +   ++ G++++wd +k++ +++   a++ +  +v +spdg+ ++  
  KOO23447.1 147 SVVFSPDGTKIVSG---SIDGTIKVWDFDKLELLSEktnAHSDCINSVAFSPDGTKIVSG 203
                 57889999988874...6789999999998888764111444555789999999988754 PP

  == domain 2  score: 12.3 bits;  conditional E-value: 9.8e-05
                 EEEE-TTSS-EEEEESSSSCEEEEEEC.S...CEEEEEEEEES--EEEE-TTSSEEEEE-TTSSS-EEEEEETTTTEEEEE...EE-TT--EEEE-TTS CS
       eIF2A  64 dvaWspkskefaviyGkmpakvslfdl.k...vkviskleeqkrNtiffspkgklvllaGfgnlaGeleiwdvkkkkkiak...aeaanatlvewspdg 155
                  va sp++++  ++ G  +++++++++ k   ++ +++ ++++  ++ fsp  + ++ +   +  G++++wd +k++ +++   a++ +  +v +spdg
  KOO23447.1 190 SVAFSPDGTK--IVSGSWDKTIKVWESgKlefLSEKTNAHSSYVMSVAFSPDRTKIVSG---SADGTIKVWDSDKLEMLSEktnAHSHWVMSVAFSPDG 283
                 6667777776..799**********99545566777777888888999***99999985...68899*******9988875111455667889****** PP

                 SEEE CS
       eIF2A 156 ryvl 159
                 + ++
  KOO23447.1 284 TKIV 287
                 9876 PP

  == domain 3  score: 15.8 bits;  conditional E-value: 8.1e-06
                 EEEE-TTSS-EEEEESSSSCEEEEEECS....CEEEEEEEEES--EEEE-TTSSEEEEE-TTSSS-EEEEEETTTTEEEEE...EE-TT--EEEE-TTS CS
       eIF2A  64 dvaWspkskefaviyGkmpakvslfdlk....vkviskleeqkrNtiffspkgklvllaGfgnlaGeleiwdvkkkkkiak...aeaanatlvewspdg 155
                  va sp+++   ++ G ++ +++++d++    ++ +++ +++   ++ fsp g+ ++ +   +  G++++wd  k++++++   a++++ t+v +sp+g
  KOO23447.1 233 SVAFSPDRT--KIVSGSADGTIKVWDSDklemLSEKTNAHSHWVMSVAFSPDGTKIVSG---SRDGTIKVWDSAKLEQLSEktnAHSQHLTSVAFSPHG 326
                 555666555..489************9654455566666667778899********985...57899*******8888875111455667999****** PP

                 SEEEE CS
       eIF2A 156 ryvlT 160
                 + ++ 
  KOO23447.1 327 TKIVS 331
                 98875 PP

  == domain 4  score: 16.0 bits;  conditional E-value: 7.3e-06
                 EEEESSSSCEEEEEEC.SCEEEEEEEEES--...EEEE-TTSSEEEEE-TTSSS-EEEEEETTTTEEEEE...EE-TT--EEEE-TTSSEEEEEE-TTT CS
       eIF2A  75 aviyGkmpakvslfdl.kvkviskleeqkrN...tiffspkgklvllaGfgnlaGeleiwdvkkkkkiak...aeaanatlvewspdgryvlTattapr 166
                  ++ G  +++++++dl k++++s+  +++rN   ++ fsp g+ ++ +    +   +++wd +k++ +++   a++    +v +spdg+ ++  +    
  KOO23447.1 328 KIVSGSGDKTIKVWDLgKLELLSEKTNAHRNyieSVAFSPDGTKIVSGAHDKT---IKVWDSDKLELLSEktdAHHHYVRSVAFSPDGTKIVSGSDDGT 423
                 37999999*******9778888888888888222568*******999998888...9*****999888652225667778899****999987666555 PP

                 -SS CS
       eIF2A 167 lrv 169
                 ++v
  KOO23447.1 424 IKV 426
                 555 PP

>> BBS2_Mid  Ciliary BBSome complex subunit 2, middle region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.9   0.0      0.18   2.2e+02      12      38 ..     154     182 ..     142     196 .. 0.70
   2 !   12.7   0.0   8.3e-05     0.099      13     106 ..     198     296 ..     187     297 .. 0.69
   3 !   13.4   0.0     5e-05      0.06      12      84 ..     240     316 ..     231     349 .. 0.68
   4 ?    0.5   0.0      0.51   6.1e+02      13      37 ..     327     353 ..     316     361 .. 0.72
   5 !    6.8   0.0    0.0055       6.6      13      68 ..     370     430 ..     362     438 .. 0.68
   6 ?    2.8   0.0       0.1   1.2e+02      13      30 ..     413     430 ..     402     460 .. 0.73

  Alignments for each domain:
  == domain 1  score: 1.9 bits;  conditional E-value: 0.18
    BBS2_Mid  12 eneLvvgsddfeirvfkee..elvaeite 38 
                  +++v gs d +i+v++ +  el++e t+
  KOO23447.1 154 GTKIVSGSIDGTIKVWDFDklELLSEKTN 182
                 468999********977663355666554 PP

  == domain 2  score: 12.7 bits;  conditional E-value: 8.3e-05
    BBS2_Mid  13 neLvvgsddfeirvfkee..elvaeitetek.vvslarleker..fayaleNGtvgvyekke.rlWrvksknevvalaaydingdgtkelivgwsnGkl 105
                 +++v gs d +i+v++ +  e ++e t+++   v+ ++ +++r  ++ + + Gt++v+++++ ++ + k++ +   ++++ ++ dg ++++ g ++G +
  KOO23447.1 198 TKIVSGSWDKTIKVWESGklEFLSEKTNAHSsYVMSVAFSPDRtkIVSGSADGTIKVWDSDKlEMLSEKTNAHSHWVMSVAFSPDG-TKIVSGSRDGTI 295
                 68999**********998344556655554414444556655555999**********9765256666666666666666666544.578999999988 PP

    BBS2_Mid 106 d 106
                 +
  KOO23447.1 296 K 296
                 6 PP

  == domain 3  score: 13.4 bits;  conditional E-value: 5e-05
    BBS2_Mid  12 eneLvvgsddfeirvfkee..elvaeitetekvvsla.rl..ekerfayaleNGtvgvyekkerlWrvksknevvala 84 
                 ++++v gs d +i+v++ +  e+++e t+++   +++ +   ++++++ + + Gt++v+++++ l + ++k+++ + +
  KOO23447.1 240 RTKIVSGSADGTIKVWDSDklEMLSEKTNAHSHWVMSvAFspDGTKIVSGSRDGTIKVWDSAK-LEQLSEKTNAHSQH 316
                 789**************99667888888776655543134114567*************9754.33444444444443 PP

  == domain 4  score: 0.5 bits;  conditional E-value: 0.51
    BBS2_Mid  13 neLvvgsddfeirvfkee..elvaeit 37 
                 +++v gs d +i+v++ +  el++e t
  KOO23447.1 327 TKIVSGSGDKTIKVWDLGklELLSEKT 353
                 57999********99866234555554 PP

  == domain 5  score: 6.8 bits;  conditional E-value: 0.0055
    BBS2_Mid  13 neLvvgsddfeirvfkee..elvaeitete.kvvslarl..ekerfayaleNGtvgvyekk 68 
                 +++v g++d +i+v++ +  el++e t ++ + v  ++   ++++++ + + Gt++v+++ 
  KOO23447.1 370 TKIVSGAHDKTIKVWDSDklELLSEKTDAHhHYVRSVAFspDGTKIVSGSDDGTIKVWDMV 430
                 5799999********9995556677665431344444441145679999999999999864 PP

  == domain 6  score: 2.8 bits;  conditional E-value: 0.1
    BBS2_Mid  13 neLvvgsddfeirvfkee 30 
                 +++v gsdd +i+v++  
  KOO23447.1 413 TKIVSGSDDGTIKVWDMV 430
                 579999***999998654 PP

>> Nbas_N  Neuroblastoma-amplified sequence, N terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.7   0.0    0.0065       7.8     230     264 ..     143     177 ..     120     185 .. 0.82
   2 ?    4.2   0.0     0.019        22     224     262 ..     180     218 ..     173     230 .. 0.81
   3 ?    2.4   0.0     0.068        81     226     263 ..     225     262 ..     215     271 .. 0.75
   4 !    7.1   0.1    0.0025         3     225     267 ..     267     309 ..     259     320 .. 0.81
   5 ?    4.2   0.0     0.019        22     209     263 ..     336     391 ..     318     400 .. 0.74
   6 ?    4.5   0.0     0.015        18     230     261 ..     401     432 ..     388     445 .. 0.66

  Alignments for each domain:
  == domain 1  score: 5.7 bits;  conditional E-value: 0.0065
      Nbas_N 230 dgvfkmslspdgtllavihfsgklsiwdipslkqr 264
                   ++ + +spdgt++    + g + +wd   l++ 
  KOO23447.1 143 VAIISVVFSPDGTKIVSGSIDGTIKVWDFDKLELL 177
                 56778899********************9988765 PP

  == domain 2  score: 4.2 bits;  conditional E-value: 0.019
      Nbas_N 224 rkaeekdgvfkmslspdgtllavihfsgklsiwdipslk 262
                 +++   d +  +++spdgt++    +   + +w+   l+
  KOO23447.1 180 KTNAHSDCINSVAFSPDGTKIVSGSWDKTIKVWESGKLE 218
                 45678899***************99999999*9876665 PP

  == domain 3  score: 2.4 bits;  conditional E-value: 0.068
      Nbas_N 226 aeekdgvfkmslspdgtllavihfsgklsiwdipslkq 263
                 +     v+ +++spd t++      g + +wd   l++
  KOO23447.1 225 NAHSSYVMSVAFSPDRTKIVSGSADGTIKVWDSDKLEM 262
                 4455668888999****999999999999999877765 PP

  == domain 4  score: 7.1 bits;  conditional E-value: 0.0025
      Nbas_N 225 kaeekdgvfkmslspdgtllavihfsgklsiwdipslkqrgew 267
                 ++     v+ +++spdgt++      g + +wd   l+q +e 
  KOO23447.1 267 TNAHSHWVMSVAFSPDGTKIVSGSRDGTIKVWDSAKLEQLSEK 309
                 455567789999*********************9999987765 PP

  == domain 5  score: 4.2 bits;  conditional E-value: 0.019
      Nbas_N 209 kkrgllkllslklysrk.aeekdgvfkmslspdgtllavihfsgklsiwdipslkq 263
                 k+  ++ l +l+l s k +  ++ +  +++spdgt++        + +wd   l++
  KOO23447.1 336 KTIKVWDLGKLELLSEKtNAHRNYIESVAFSPDGTKIVSGAHDKTIKVWDSDKLEL 391
                 4445566667777775515567888899*********999999999***9877765 PP

  == domain 6  score: 4.5 bits;  conditional E-value: 0.015
      Nbas_N 230 dgvfkmslspdgtllavihfsgklsiwdipsl 261
                   v  +++spdgt++      g + +wd+   
  KOO23447.1 401 HYVRSVAFSPDGTKIVSGSDDGTIKVWDMVKW 432
                 34555677888888888888888888877654 PP

>> DUF1513  Protein of unknown function (DUF1513)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.0       1.3   1.6e+03     221     257 ..     147     182 ..     144     215 .. 0.58
   2 !    9.3   0.1   0.00046      0.55     209     291 ..     221     305 ..     212     325 .. 0.63
   3 !    6.7   0.0    0.0027       3.3     209     278 ..     264     335 ..     259     357 .. 0.71
   4 !    7.1   0.0    0.0021       2.5     207     254 ..     348     394 ..     339     399 .. 0.83
   5 ?    4.0   0.0     0.018        22     210     246 ..     394     429 ..     388     443 .. 0.77

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 1.3
     DUF1513 221 svavdsegrlvavtsPrgnlvavwdlasgelleeaal 257
                 sv+++ +g+ + v+    +++ vwd ++ ell+e++ 
  KOO23447.1 147 SVVFSPDGTKI-VSGSIDGTIKVWDFDKLELLSEKTN 182
                 56666665444.5566666777777777666655433 PP

  == domain 2  score: 9.3 bits;  conditional E-value: 0.00046
     DUF1513 209 eeelaalagYigsvavdsegrlvavtsPrgnlvavwdlasgelleeaalad...aagvaaaksgflvssGqgklvetaaeqaslkq 291
                 +e+++a   Y+ sva++ + + + v+    +++ vwd+++ e+l+e++ a    ++ va  ++g  + sG+ + + +  ++a+l+q
  KOO23447.1 221 SEKTNAHSSYVMSVAFSPDRTKI-VSGSADGTIKVWDSDKLEMLSEKTNAHshwVMSVAFSPDGTKIVSGSRDGTIKVWDSAKLEQ 305
                 5566777899******9986555.77777789999999998888776554423367888888887777777553333333333332 PP

  == domain 3  score: 6.7 bits;  conditional E-value: 0.0027
     DUF1513 209 eeelaalagYigsvavdsegrlvavtsPrgnlvavwdlasgelleeaa...ladaagvaaaksgflvssGqgk 278
                 +e+++a  +++ sva++ +g+ + v+  r +++ vwd+a+ e l+e++    +    va  ++g  + sG+g+
  KOO23447.1 264 SEKTNAHSHWVMSVAFSPDGTKI-VSGSRDGTIKVWDSAKLEQLSEKTnahSQHLTSVAFSPHGTKIVSGSGD 335
                 5667788999********99776.9999999*****9888776655441114456777777777777777776 PP

  == domain 4  score: 7.1 bits;  conditional E-value: 0.0021
     DUF1513 207 apeeelaalagYigsvavdsegrlvavtsPrgnlvavwdlasgellee 254
                 + +e+++a ++Yi sva++ +g+ + v+  + +++ vwd+++ ell+e
  KOO23447.1 348 LLSEKTNAHRNYIESVAFSPDGTKI-VSGAHDKTIKVWDSDKLELLSE 394
                 5567788999**********99766.999*********9998888765 PP

  == domain 5  score: 4.0 bits;  conditional E-value: 0.018
     DUF1513 210 eelaalagYigsvavdsegrlvavtsPrgnlvavwdl 246
                 e++ a ++Y+ sva++ +g+ + v+    +++ vwd+
  KOO23447.1 394 EKTDAHHHYVRSVAFSPDGTKI-VSGSDDGTIKVWDM 429
                 6667889***********9888.56666668889975 PP

>> DCX  Doublecortin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.6   0.0      0.52   6.2e+02      27      40 ..     146     159 ..     130     163 .. 0.75
   2 ?    0.6   0.0      0.53   6.4e+02      14      40 ..     174     202 ..     168     204 .. 0.80
   3 ?   -2.1   0.0       3.5   4.2e+03      14      40 ..     217     245 ..     217     248 .. 0.74
   4 ?    3.0   0.0     0.093   1.1e+02      14      40 ..     260     288 ..     258     292 .. 0.86
   5 ?   -0.6   0.0       1.2   1.5e+03      14      40 ..     303     331 ..     300     335 .. 0.72
   6 ?   -0.1   0.0      0.86     1e+03      14      40 ..     346     374 ..     346     378 .. 0.71
   7 !    6.1   0.0    0.0098        12      14      43 ..     389     420 ..     386     421 .. 0.85

  Alignments for each domain:
  == domain 1  score: 0.6 bits;  conditional E-value: 0.52
         DCX  27 VrklytldGrkvvs 40 
                 +  ++++dG+k+vs
  KOO23447.1 146 ISVVFSPDGTKIVS 159
                 6668******9998 PP

  == domain 2  score: 0.6 bits;  conditional E-value: 0.53
         DCX  14 Ldeltekvklpfg.Vrkly.tldGrkvvs 40 
                 L+ l+ek ++++  +  +  ++dG+k+vs
  KOO23447.1 174 LELLSEKTNAHSDcINSVAfSPDGTKIVS 202
                 68888998887777877744*****9987 PP

  == domain 3  score: -2.1 bits;  conditional E-value: 3.5
         DCX  14 Ldeltekvklpfg.Vrkly.tldGrkvvs 40 
                 L+ l+ek ++++  V  +  ++d +k+vs
  KOO23447.1 217 LEFLSEKTNAHSSyVMSVAfSPDRTKIVS 245
                 66788998887777888744888888777 PP

  == domain 4  score: 3.0 bits;  conditional E-value: 0.093
         DCX  14 Ldeltekvklpfg.Vrkly.tldGrkvvs 40 
                 L++l+ek ++++  V  +  ++dG+k+vs
  KOO23447.1 260 LEMLSEKTNAHSHwVMSVAfSPDGTKIVS 288
                 899****9999999999955*****9998 PP

  == domain 5  score: -0.6 bits;  conditional E-value: 1.2
         DCX  14 Ldeltekvklpfg..VrklytldGrkvvs 40 
                 L++l+ek +++++      +++ G+k+vs
  KOO23447.1 303 LEQLSEKTNAHSQhlTSVAFSPHGTKIVS 331
                 89999999885555555557888888877 PP

  == domain 6  score: -0.1 bits;  conditional E-value: 0.86
         DCX  14 Ldeltekvklpfg.Vrkl.ytldGrkvvs 40 
                 L+ l+ek +++   +  + +++dG+k+vs
  KOO23447.1 346 LELLSEKTNAHRNyIESVaFSPDGTKIVS 374
                 567778877755557776359****9998 PP

  == domain 7  score: 6.1 bits;  conditional E-value: 0.0098
         DCX  14 Ldeltekvklpfg.Vrkly.tldGrkvvssld 43 
                 L+ l+ek  +++  Vr +  ++dG+k+vs  d
  KOO23447.1 389 LELLSEKTDAHHHyVRSVAfSPDGTKIVSGSD 420
                 889*****997777****66*****9999555 PP

>> Plk4_PB1  Polo-like Kinase 4 Polo Box 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.0       2.9   3.5e+03      34      57 ..     134     158 ..     128     171 .. 0.67
   2 ?    4.7   0.0     0.028        33      31      63 ..     174     207 ..     165     233 .. 0.80
   3 ?   -1.6   0.0       2.6   3.1e+03      21      57 ..     209     244 ..     205     259 .. 0.66
   4 ?    2.0   0.0      0.19   2.3e+02      23      59 ..     254     289 ..     234     320 .. 0.72
   5 !    7.6   0.0    0.0034         4      30      73 ..     345     389 ..     335     404 .. 0.74
   6 ?    1.3   0.0      0.31   3.7e+02      25      57 ..     385     416 ..     376     427 .. 0.79

  Alignments for each domain:
  == domain 1  score: -1.8 bits;  conditional E-value: 2.9
    Plk4_PB1  34 lkkkngeekvvev.lriSsdGqeii 57 
                 + +k++ + v+ + +  S dG++i+
  KOO23447.1 134 VADKTKAHSVAIIsVVFSPDGTKIV 158
                 5556555555444134599999997 PP

  == domain 2  score: 4.7 bits;  conditional E-value: 0.028
    Plk4_PB1  31 lellkkk.ngeekvvevlriSsdGqeiiiyqpes 63 
                 lell +k n +  +++ +  S dG++i+    ++
  KOO23447.1 174 LELLSEKtNAHSDCINSVAFSPDGTKIVSGSWDK 207
                 8999999778899**************8665555 PP

  == domain 3  score: -1.6 bits;  conditional E-value: 2.6
    Plk4_PB1  21 vsilesgeVclellkkk.ngeekvvevlriSsdGqeii 57 
                 +++ esg   le+l +k n +   v  +  S d ++i+
  KOO23447.1 209 IKVWESG--KLEFLSEKtNAHSSYVMSVAFSPDRTKIV 244
                 5555555..58999999544444455556677777765 PP

  == domain 4  score: 2.0 bits;  conditional E-value: 0.19
    Plk4_PB1  23 ilesgeVclellkkk.ngeekvvevlriSsdGqeiiiy 59 
                 + +s+   le+l +k n + + v  +  S dG++i+  
  KOO23447.1 254 VWDSD--KLEMLSEKtNAHSHWVMSVAFSPDGTKIVSG 289
                 44554..589999996677788888999******9854 PP

  == domain 5  score: 7.6 bits;  conditional E-value: 0.0034
    Plk4_PB1  30 clellkkk.ngeekvvevlriSsdGqeiiiyqpesgkevplndrp 73 
                  lell +k n +++ +e +  S dG++i+    +++ +v  +d+ 
  KOO23447.1 345 KLELLSEKtNAHRNYIESVAFSPDGTKIVSGAHDKTIKVWDSDKL 389
                 48999999788999**************98877777776555544 PP

  == domain 6  score: 1.3 bits;  conditional E-value: 0.31
    Plk4_PB1  25 esgeVclellkkk.ngeekvvevlriSsdGqeii 57 
                 +s+   lell +k + +++ v  +  S dG++i+
  KOO23447.1 385 DSD--KLELLSEKtDAHHHYVRSVAFSPDGTKIV 416
                 444..58999999666778889999*******97 PP

>> Dfp1_Him1_M  Dfp1/Him1, central region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.6   0.0     0.059        70       7      27 ..     162     182 ..     156     194 .. 0.73
   2 ?    0.0   0.1      0.77   9.1e+02       9      23 ..     207     221 ..     199     235 .. 0.72
   3 ?    3.0   0.1     0.095   1.1e+02       6      23 ..     247     264 ..     242     276 .. 0.73
   4 ?    4.4   0.0     0.035        42       3      32 ..     287     316 ..     285     327 .. 0.80
   5 ?    1.3   0.0      0.31   3.7e+02       8      26 ..     335     353 ..     328     364 .. 0.73
   6 ?    5.6   0.0     0.014        17       2      22 ..     372     392 ..     371     407 .. 0.79
   7 ?   -0.3   0.1      0.97   1.2e+03       7      21 ..     420     434 ..     414     448 .. 0.69

  Alignments for each domain:
  == domain 1  score: 3.6 bits;  conditional E-value: 0.059
  Dfp1_Him1_M   7 relkmkiWsleKlqrvLknll 27 
                   +  +k+W+++Kl+ + ++ +
   KOO23447.1 162 IDGTIKVWDFDKLELLSEKTN 182
                  56789********87655555 PP

  == domain 2  score: 0.0 bits;  conditional E-value: 0.77
  Dfp1_Him1_M   9 lkmkiWsleKlqrvL 23 
                    +k+W+  Kl+ + 
   KOO23447.1 207 KTIKVWESGKLEFLS 221
                  579*******97544 PP

  == domain 3  score: 3.0 bits;  conditional E-value: 0.095
  Dfp1_Him1_M   6 ArelkmkiWsleKlqrvL 23 
                    +  +k+W+ +Kl+ + 
   KOO23447.1 247 SADGTIKVWDSDKLEMLS 264
                  566789*******98654 PP

  == domain 4  score: 4.4 bits;  conditional E-value: 0.035
  Dfp1_Him1_M   3 lskArelkmkiWsleKlqrvLknllekdse 32 
                  +s  r+  +k+W+  Kl+++ ++ ++++++
   KOO23447.1 287 VSGSRDGTIKVWDSAKLEQLSEKTNAHSQH 316
                  56678889**********998887777665 PP

  == domain 5  score: 1.3 bits;  conditional E-value: 0.31
  Dfp1_Him1_M   8 elkmkiWsleKlqrvLknl 26 
                  +  +k+W+l Kl+ + ++ 
   KOO23447.1 335 DKTIKVWDLGKLELLSEKT 353
                  5679*******98665555 PP

  == domain 6  score: 5.6 bits;  conditional E-value: 0.014
  Dfp1_Him1_M   2 ilskArelkmkiWsleKlqrv 22 
                  i+s A++  +k+W+ +Kl+ +
   KOO23447.1 372 IVSGAHDKTIKVWDSDKLELL 392
                  778899***********9865 PP

  == domain 7  score: -0.3 bits;  conditional E-value: 0.97
  Dfp1_Him1_M   7 relkmkiWsleKlqr 21 
                   +  +k+W++ K +r
   KOO23447.1 420 DDGTIKVWDMVKWSR 434
                  566799999998876 PP

>> Utp8  Utp8 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.1   0.0     0.044        52     132     174 ..     142     184 ..     133     201 .. 0.78
   2 !    4.5   0.0    0.0083        10     120     168 ..     216     264 ..     194     273 .. 0.79
   3 !    8.6   0.1   0.00049      0.59      86     183 ..     225     322 ..     217     355 .. 0.68
   4 ?    2.3   0.0     0.039        46     102     162 ..     370     430 ..     345     448 .. 0.77

  Alignments for each domain:
  == domain 1  score: 2.1 bits;  conditional E-value: 0.044
        Utp8 132 kkkvvsikisskkkqivvvlenGsielldfelklleslksskk 174
                 +  ++s+ +s+++ +iv    +G+i+++df++ +l s k++ +
  KOO23447.1 142 SVAIISVVFSPDGTKIVSGSIDGTIKVWDFDKLELLSEKTNAH 184
                 45799*************************9875555554444 PP

  == domain 2  score: 4.5 bits;  conditional E-value: 0.0083
        Utp8 120 eeetsseyevklkkkvvsikisskkkqivvvlenGsielldfelklles 168
                 + e+ se +   ++ v+s+ +s++  +iv   ++G+i+++d+++ ++ s
  KOO23447.1 216 KLEFLSEKTNAHSSYVMSVAFSPDRTKIVSGSADGTIKVWDSDKLEMLS 264
                 556778888889999**************************98764443 PP

  == domain 3  score: 8.6 bits;  conditional E-value: 0.00049
        Utp8  86 nseelwlvglserkkeskLlliekekeeteddkteeetsseyevklkkkvvsikisskkkqivvvlenGsielldfelklleslksskknkklvetfi 183
                 n+++ +++ +       k++  + + + +  d+ + e+ se +   ++ v+s+ +s+++ +iv   ++G+i+++d+ + ++ s k++ +++ l++   
  KOO23447.1 225 NAHSSYVMSVAFSPDRTKIVSGSADGTIKVWDSDKLEMLSEKTNAHSHWVMSVAFSPDGTKIVSGSRDGTIKVWDSAKLEQLSEKTNAHSQHLTSVAF 322
                 44555555554443345566654444445566667778888888888889999999999999999999999999987776666666665555555544 PP

  == domain 4  score: 2.3 bits;  conditional E-value: 0.039
        Utp8 102 skLlliekekeeteddkteeetsseyevklkkkvvsikisskkkqivvvlenGsielldfe 162
                  k++   ++k+ +  d+ + e  se ++   + v s+ +s+++ +iv   ++G+i+++d+ 
  KOO23447.1 370 TKIVSGAHDKTIKVWDSDKLELLSEKTDAHHHYVRSVAFSPDGTKIVSGSDDGTIKVWDMV 430
                 5566655566666677788899999999******************************975 PP

>> rOmpB  Rickettsia outer membrane protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.7   0.1    0.0077       9.2      21      54 ..     132     165 ..     126     178 .. 0.83
   2 ?    0.5   0.0       0.3   3.6e+02      31      50 ..     185     204 ..     172     208 .. 0.79
   3 ?   -0.5   0.0       0.6   7.2e+02      30      53 ..     227     250 ..     207     263 .. 0.82
   4 ?    3.2   0.2     0.043        51      31      54 ..     271     294 ..     242     334 .. 0.62
   5 ?   -0.2   0.0      0.48   5.8e+02      33      50 ..     316     333 ..     307     343 .. 0.82
   6 ?    0.5   0.0      0.29   3.5e+02      31      50 ..     357     376 ..     339     382 .. 0.80
   7 ?    2.1   0.0     0.093   1.1e+02      28      53 ..     397     422 ..     376     426 .. 0.79

  Alignments for each domain:
  == domain 1  score: 5.7 bits;  conditional E-value: 0.0077
       rOmpB  21 nlyatnitttdanvgslvfraggtsivsgtvggq 54 
                 n  a++  +    + s+vf   gt+ivsg++ g 
  KOO23447.1 132 NCVADKTKAHSVAIISVVFSPDGTKIVSGSIDGT 165
                 666777777788899***************9885 PP

  == domain 2  score: 0.5 bits;  conditional E-value: 0.3
       rOmpB  31 danvgslvfraggtsivsgt 50 
                    + s+ f   gt+ivsg+
  KOO23447.1 185 SDCINSVAFSPDGTKIVSGS 204
                 4568899***********96 PP

  == domain 3  score: -0.5 bits;  conditional E-value: 0.6
       rOmpB  30 tdanvgslvfraggtsivsgtvgg 53 
                   + v s+ f    t+ivsg+  g
  KOO23447.1 227 HSSYVMSVAFSPDRTKIVSGSADG 250
                 456789999999*******98877 PP

  == domain 4  score: 3.2 bits;  conditional E-value: 0.043
       rOmpB  31 danvgslvfraggtsivsgtvggq 54 
                    v s+ f   gt+ivsg+  g 
  KOO23447.1 271 SHWVMSVAFSPDGTKIVSGSRDGT 294
                 456889999999999999876553 PP

  == domain 5  score: -0.2 bits;  conditional E-value: 0.48
       rOmpB  33 nvgslvfraggtsivsgt 50 
                  + s+ f   gt+ivsg+
  KOO23447.1 316 HLTSVAFSPHGTKIVSGS 333
                 567999**********96 PP

  == domain 6  score: 0.5 bits;  conditional E-value: 0.29
       rOmpB  31 danvgslvfraggtsivsgt 50 
                    + s+ f   gt+ivsg+
  KOO23447.1 357 RNYIESVAFSPDGTKIVSGA 376
                 4568899***********96 PP

  == domain 7  score: 2.1 bits;  conditional E-value: 0.093
       rOmpB  28 tttdanvgslvfraggtsivsgtvgg 53 
                  +    v s+ f   gt+ivsg+  g
  KOO23447.1 397 DAHHHYVRSVAFSPDGTKIVSGSDDG 422
                 45556799**************8655 PP

>> WD40_3  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.8   0.0     0.048        57       6      23 ..     141     158 ..     140     165 .. 0.93
   2 ?    1.6   0.0      0.23   2.8e+02       6      23 ..     184     201 ..     182     202 .. 0.94
   3 ?   -0.7   0.0       1.2   1.5e+03       6      23 ..     270     287 ..     269     305 .. 0.87
   4 ?    0.6   0.1      0.47   5.6e+02       6      23 ..     313     330 ..     310     331 .. 0.93
   5 ?   -1.5   0.0       2.3   2.7e+03       6      23 ..     356     373 ..     355     374 .. 0.88
   6 ?    1.0   0.0      0.38   4.5e+02       6      24 ..     399     417 ..     398     431 .. 0.85

  Alignments for each domain:
  == domain 1  score: 3.8 bits;  conditional E-value: 0.048
      WD40_3   6 HsvgIkklfpnpsGtrlv 23 
                 Hsv I++++  p+Gt++v
  KOO23447.1 141 HSVAIISVVFSPDGTKIV 158
                 9***************98 PP

  == domain 2  score: 1.6 bits;  conditional E-value: 0.23
      WD40_3   6 HsvgIkklfpnpsGtrlv 23 
                 Hs+ I ++   p+Gt++v
  KOO23447.1 184 HSDCINSVAFSPDGTKIV 201
                 9**************998 PP

  == domain 3  score: -0.7 bits;  conditional E-value: 1.2
      WD40_3   6 HsvgIkklfpnpsGtrlv 23 
                 Hs+ + ++   p+Gt++v
  KOO23447.1 270 HSHWVMSVAFSPDGTKIV 287
                 899999999******998 PP

  == domain 4  score: 0.6 bits;  conditional E-value: 0.47
      WD40_3   6 HsvgIkklfpnpsGtrlv 23 
                 Hs++++++   p Gt++v
  KOO23447.1 313 HSQHLTSVAFSPHGTKIV 330
                 9**************997 PP

  == domain 5  score: -1.5 bits;  conditional E-value: 2.3
      WD40_3   6 HsvgIkklfpnpsGtrlv 23 
                 H + I ++   p+Gt++v
  KOO23447.1 356 HRNYIESVAFSPDGTKIV 373
                 7788999999*****997 PP

  == domain 6  score: 1.0 bits;  conditional E-value: 0.38
      WD40_3   6 HsvgIkklfpnpsGtrlvf 24 
                 H++ ++++   p+Gt++v 
  KOO23447.1 399 HHHYVRSVAFSPDGTKIVS 417
                 8899************985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (477 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       510  (0.0284455); expected 358.6 (0.02)
Passed bias filter:                      365  (0.0203581); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                        16  (0.000892409); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              15  [number of targets reported over threshold]
# CPU time: 0.75u 0.29s 00:00:01.04 Elapsed: 00:00:00.47
# Mc/sec: 3065.57
//
Query:       KOO23448.1  [L=167]
Description: hypothetical protein Ctob_004054 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    0.00033   20.4   0.0    0.00084   19.1   0.0    1.6  1  Methyltransf_16  Lysine methyltransferase


Domain annotation for each model (and alignments):
>> Methyltransf_16  Lysine methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.1   0.0   4.7e-08   0.00084      73     150 ..       2      91 ..       1     111 [. 0.71

  Alignments for each domain:
  == domain 1  score: 19.1 bits;  conditional E-value: 4.7e-08
  Methyltransf_16  73 viltD.leellellkknielnkn.alkskvkvevLdWge..ele....edl....lekeevDlilaaDcvYledslelLvkvLkellkke 150
                      v+ltD  +ell+l+++n+  n +   + + ++    Wg   +l     + l     ++ ++D il +D +Y+  s  +L ++L+ l + +
       KOO23448.1   2 VVLTDgASELLPLIEHNVRRNAQlVAEAACQAALVRWGSaeDLAaletPRLsrgdPSPLRFDWILGSDTIYDPASHAPLCATLRMLFDRH 91 
                      889994467***********9994445556777779*962244211112221111334569***********************998765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (167 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       422  (0.0235373); expected 358.6 (0.02)
Passed bias filter:                      332  (0.0185175); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.25s 00:00:00.65 Elapsed: 00:00:00.42
# Mc/sec: 1204.04
//
Query:       KOO23449.1  [L=391]
Description: hypothetical protein Ctob_004057 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.7e-10   40.7   0.0    7.1e-10   39.3   0.0    1.7  1  PH        PH domain
     0.0083   16.3   0.7     0.0083   16.3   0.7    1.5  2  CobS      Cobalamin-5-phosphate synthase
  ------ inclusion threshold ------
      0.057   13.1   2.1       0.13   11.9   2.1    1.6  1  DUF2244   Integral membrane protein (DUF2244)
       0.06   13.0   9.1       0.22   11.2   9.1    1.7  1  Orai-1    Mediator of CRAC channel activity
      0.066   13.6   0.0        0.2   12.1   0.0    1.8  1  PH_11     Pleckstrin homology domain


Domain annotation for each model (and alignments):
>> PH  PH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.3   0.0     2e-13   7.1e-10       2     104 ..     255     371 ..     254     372 .. 0.87

  Alignments for each domain:
  == domain 1  score: 39.3 bits;  conditional E-value: 2e-13
                 EEEEEEEEETSSSSC....SEEEEEEEEETTEEEEESST............TCTTESSEEEEEESTTEEEEEEECTTSSSSTSEEEEEESTSSS.TEEE CS
          PH   2 vkeGwLlkkgsgkkk....swkkrwfvLkdsellyyknd............ksekdkepkgsislsncevvevvatedpkrkfcfelriverng.srty 83 
                 ++eGwL+kkg++ ++    ++++r++vL++  l+y+++             +   + +    i++++ +vv+v+ ++d++ ++ f l+ +  n+ +r++
  KOO23449.1 255 KHEGWLFKKGEKGAFfgtdKFQRRYCVLQGPYLFYFRSWedygaatgpmaeRLRVAVNHGAPIDVRQYDVVRVR-EADSDMPNRFDLVPT--NPlDRKF 350
                 69******************************************998877644444455666888888888886.779999******777..8888*** PP

                 EEEESSHHHHHHHHHHHHHHH CS
          PH  84 llqasseeerkeWikaiqsai 104
                  lq  + +e ++Wi+++++a+
  KOO23449.1 351 ELQGVTLDETEDWINQFRMAK 371
                 *****************9986 PP

>> CobS  Cobalamin-5-phosphate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.1       1.9   6.7e+03      97      97 ..      76      76 ..      38      94 .. 0.55
   2 !   16.3   0.7   2.3e-06    0.0083      73     140 ..      99     167 ..      96     211 .. 0.67

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 1.9
        CobS 97 a 97
                a
  KOO23449.1 76 A 76
                1 PP

  == domain 2  score: 16.3 bits;  conditional E-value: 2.3e-06
        CobS  73 gsgrdrerrleImkDsrvGafGvlalvlvlllkvaalaala..lllapvlsRlaallaiallpya.e.eglg 140
                 g +++ er++ I+ D r+  f+++al l++l+ +a+++a +      +++s +++++++ ++  + + +++ 
  KOO23449.1  99 GPHGSLERAVHILIDHRIHIFAMAALSLAFLVSAAVFMAWIkmG---AAASMVTIIFLVFAFSVYkRmTSMF 167
                 667789****************************9974444331...3333333333333333221113333 PP

>> DUF2244  Integral membrane protein (DUF2244)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   2.1   3.7e-05      0.13      13      74 ..     115     178 ..     100     194 .. 0.85

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 3.7e-05
     DUF2244  13 lllllalalvslvialafllaGawpvlpFa..glevlalalafrvsarhardrEeitltdeelt 74 
                 ++ ++a+a++sl++ +  ++  aw+ ++ a  +++++ l++af v+ r +  +E   + +++l+
  KOO23449.1 115 RIHIFAMAALSLAFLVSAAVFMAWIKMGAAasMVTIIFLVFAFSVYKRMTSMFEIFHIPEDKLV 178
                 567888999999999999999999888765337899999*****************99999986 PP

>> Orai-1  Mediator of CRAC channel activity
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   9.1     6e-05      0.22       3     158 ..      19     161 ..      17     169 .. 0.67

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 6e-05
      Orai-1   3 elnrrklelsrakLkassrtsALlsgFamvamvelqlkeseekeeeisealliafsvvtavlvavhllallist..liLpnieavskienledeevees 99 
                 el +r+le + ++   ++ ++  ++gF+   +vel+++e+      +++ l +++ v++a ++a+ l  l i++  ++  + +a +  + + +++v+  
  KOO23449.1  19 ELRQRELEFHVERYTNLATQASVVAGFSFESLVELEVPEG------TPPLLSACYFVCGASAMALSLYVLCIASfaCVFGHRLALQGPHGSLERAVHIL 111
                 67889999999**************************777......68888899999999888888887777652255555555544444433333333 PP

      Orai-1 100 phekleeyiekaWlfatalGillFLvev.allswvkFlavssaaalvvtailvpvlilfv 158
                   ++         +fa+a   l FLv+  ++++w+k+    +aa++v+++ lv+++ ++ 
  KOO23449.1 112 IDHR-------IHIFAMAALSLAFLVSAaVFMAWIKMG---AAASMVTIIFLVFAFSVYK 161
                 3333.......345566555555666541457899995...5455555555566666654 PP

>> PH_11  Pleckstrin homology domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   5.5e-05       0.2       2     102 ..     257     367 ..     256     370 .. 0.74

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 5.5e-05
       PH_11   2 kGylkkkgsk.......aWkrrwfavlkdgvLeyYk............sekkkvvkhviklSngseaklkadlisaalfkidsirssksddllleiste 81 
                 +G+l kkg+k         +rr++ vl+   L+y+             +          +l    +   + d+ ++ +  ++++ s   ++ +l   + 
  KOO23449.1 257 EGWLFKKGEKgaffgtdKFQRRYC-VLQGPYLFYFRswedygaatgpmA---------ERLRVAVNHGAPIDVRQYDVVRVREADSDMPNRFDLVPTNP 345
                 7999999999999999999*****.***********5544443333222.........23333445566777888888899999998888877765554 PP

       PH_11  82 t.kifflkgdsneeteeWveal 102
                 + + f l+g++ +ete+W+++ 
  KOO23449.1 346 LdRKFELQGVTLDETEDWINQF 367
                 415689*************975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (391 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       848  (0.0472977); expected 358.6 (0.02)
Passed bias filter:                      443  (0.0247086); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.51u 0.29s 00:00:00.80 Elapsed: 00:00:00.44
# Mc/sec: 2690.63
//
Query:       KOO23450.1  [L=75]
Description: hypothetical protein Ctob_004056, partial [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (75 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       328  (0.0182944); expected 358.6 (0.02)
Passed bias filter:                      231  (0.0128842); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.25s 00:00:00.58 Elapsed: 00:00:00.39
# Mc/sec: 573.34
//
Query:       KOO23451.1  [L=226]
Description: hypothetical protein Ctob_004051 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (226 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       513  (0.0286129); expected 358.6 (0.02)
Passed bias filter:                      217  (0.0121033); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.40u 0.24s 00:00:00.64 Elapsed: 00:00:00.40
# Mc/sec: 1687.94
//
Query:       KOO23452.1  [L=590]
Description: hypothetical protein Ctob_004050 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.5e-19   68.7   0.0    2.8e-15   56.5   0.0    2.4  2  Bestrophin  Bestrophin, RFP-TM, chloride channel
      1e-08   35.3   9.0    9.7e-07   28.8   9.0    2.3  1  Mesd        Chaperone for wingless signalling and trafficking


Domain annotation for each model (and alignments):
>> Bestrophin  Bestrophin, RFP-TM, chloride channel
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.5   0.0   3.2e-19   2.8e-15      58     289 ..      38     318 ..       2     327 .. 0.71
   2 !    9.6   0.0   5.8e-05      0.52      89     200 ..     375     494 ..     358     508 .. 0.69

  Alignments for each domain:
  == domain 1  score: 56.5 bits;  conditional E-value: 3.2e-19
  Bestrophin  58 lipLsfvLgFrvnavydRWweqrkl.......lgwldkaarslarqvrgls......deegrlarrtilrylvlllvlffralssrvrkr......... 134
                 +++L+ +L+Fr+n++y+R+we  ++       +g   ++a+++   +++ +         + l++r++ ++l+     +++al  +  +r         
  KOO23452.1  38 FLALT-LLVFRTNVAYNRFWECCTSvtvmggmWGDAFTMAITMDELINT-NkreygeAGAAWLEKRRRHQMLMARRYSLCHALALQYLRRddclknlvp 134
                 34554.69*************9886222222255555555555556666.2576654133344444444445555555556665554444599999*** PP

  Bestrophin 135 .........................fptlehlleagllteeeakilenkywvplqWavsllrrlaerlkelakegrikddqalkeleeelnelraklgs 208
                                          +p+ ++l   g lte+e + le+++ +  + ++s +++l    +++ + g  +d+  l + ++ l++  + + +
  KOO23452.1 135 sdgrqpkvpmgagafggmeqptsraDPEWQQLEVLGGLTESEIRSLESSPDRVGY-IFSQIMHLN--AQRRCDGGLGTDPPVLSRYWSCLSSGMSGMRQ 230
                 *******************998888888889999999**********98888888.444444434..23556666677777999*************** PP

  Bestrophin 209 leridwtpiPlvYtqvvtravylyfllallgrqfldse..........idlylPvftllqfaffffGllkvaeqlenPFGedddDlelnal 289
                   +++ +p P  Ytq v ++++l+ l+  l   ++  +            ++ P+++++ +   f +l++va +le+PF + ++Dl+ nal
  KOO23452.1 231 ARKVEDIPFPWPYTQAVALCTHLFALTFPLVLAHF--AncgsvscaspNYWMGPFLAFVTV-TSFAALDQVAVALEDPFVHPPNDLPANAL 318
                 ************************99943333333..244789999855555599999999.***************************98 PP

  == domain 2  score: 9.6 bits;  conditional E-value: 5.8e-05
  Bestrophin  89 aarslarqvrglsdeegrlarrtilrylvlllvlffralssrvrkr.........fptle..hlleagllteeeakile.....nkywvplqWavsllr 171
                 a++++  q r+ sd ++r+ r ++++ +++ll+l++ + +++ r r         +   +  + +e++  t ee++++e       + v +     +l+
  KOO23452.1 375 ATVNFLGQWRK-SDATERATRSHRVKACMRLLLLVACCACAAARPRtgrdwskltD---KdwDRIEDEWSTPEEKEEYEfkppkPGKGVDID----ALQ 465
                 45556666677.578999999*************************9999886542...245556666677777777777797666666666....666 PP

  Bestrophin 172 rlaerlkelakegrikddqalkeleeeln 200
                 ++ e+ ++l+k+g++k+  +  e+++ l 
  KOO23452.1 466 KAMEKQEKLKKKGKLKKGEQSPEVKKMLA 494
                 65556688999999988774334333333 PP

>> Mesd  Chaperone for wingless signalling and trafficking of LDL receptor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.8   9.0   1.1e-10   9.7e-07      49     144 ..     485     585 ..     421     589 .. 0.65

  Alignments for each domain:
  == domain 1  score: 28.8 bits;  conditional E-value: 1.1e-10
                 SSXH..HHHHHHXS.SSEEEEEEEES..SSSSHHHHHHHHHHHHHHHHHTT-SEEEEEESTTEEEEEESSSTTHHHHHHHHHTSSTEEEEEESSSCESS CS
        Mesd  49 snPe..ellklskk.Gktlmvfvtvs..gdpteketeeitklWqtslfnaniqveryvvdsnraifmlkdGsqawevkdflveqdrcaevtiegksypG 142
                 ++Pe  ++l  +++     m+f+t++  g   ++ete+i + W t + +a + v+ yv+d+n +++ ++ G    e+ +++ +q +c  v  ++++ pG
  KOO23452.1 485 QSPEvkKMLAQTQQtSGPAMLFATLDyeGCCKKNETEKIGTRWATLMASAGMAVQTYVIDENMVLYSTQAGGFVNEIIEYVTQQTECVFVEFNSQQTPG 583
                 222211233333330334799*998733668899*************************************************************9999 PP

                 SS CS
        Mesd 143 ka 144
                  a
  KOO23452.1 584 PA 585
                 65 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (590 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       749  (0.0417759); expected 358.6 (0.02)
Passed bias filter:                      500  (0.0278878); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.60u 0.30s 00:00:00.89 Elapsed: 00:00:00.43
# Mc/sec: 4075.78
//
Query:       KOO23453.1  [L=69]
Description: 60s ribosomal protein l38 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.8e-35  119.8   6.0    4.1e-35  119.7   6.0    1.0  1  Ribosomal_L38e  Ribosomal L38e protein family


Domain annotation for each model (and alignments):
>> Ribosomal_L38e  Ribosomal L38e protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  119.7   6.0   2.3e-39   4.1e-35       1      69 []       2      69 .]       2      69 .] 0.99

  Alignments for each domain:
  == domain 1  score: 119.7 bits;  conditional E-value: 2.3e-39
  Ribosomal_L38e  1 PkeikdiKeFLeiarrkDaksvkikknkkdntKfKvRcsryLYTLvvkdkekaeklkqsLppglkvkei 69
                    Pk+i++iK+FL +arrkDaksvkikk+k d +KfKvRcs+yLYTL+vkd eka+klkqsLppgl+vk+i
      KOO23453.1  2 PKQINEIKDFLLTARRKDAKSVKIKKSK-DVVKFKVRCSKYLYTLCVKDLEKADKLKQSLPPGLTVKDI 69
                    9***************************.*************************************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (69 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       698  (0.0389313); expected 358.6 (0.02)
Passed bias filter:                      394  (0.0219756); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.23s 00:00:00.60 Elapsed: 00:00:00.39
# Mc/sec: 529.35
//
Query:       KOO23454.1  [L=406]
Description: glycosyl family 2:glycosyl group 1 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    6.2e-10   39.6   0.0    1.4e-09   38.5   0.0    1.6  1  Glyco_trans_1_4  Glycosyl transferases group 1
    5.4e-05   23.5   0.0     0.0001   22.6   0.0    1.4  1  Glyco_trans_1_2  Glycosyl transferases group 1


Domain annotation for each model (and alignments):
>> Glyco_trans_1_4  Glycosyl transferases group 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.5   0.0   1.5e-13   1.4e-09       3     133 ..      58     221 ..      56     222 .. 0.75

  Alignments for each domain:
  == domain 1  score: 38.5 bits;  conditional E-value: 1.5e-13
                      EEEEES--.-G.G.GTHHHHHHHH.HHHH.H.H.EEEEEES---............HHHHHHHTT-...................T.TEEEE-- CS
  Glyco_trans_1_4   3 vilfvGrl.ee.nvkgvdllleav.pllrkk.d.vrlvivGdgp..rp........eeleelaagl...................eerveftGf 62 
                      +i+f+G+  ++ n+  ++++l +v p+lr + + vrl +vG  p  rp        +        l                   + +v  +Gf
       KOO23454.1  58 RIGFMGNGiTPtNHLSIEWFLSEVwPALRTAlPsVRLRLVGYAPddRPkrqqgkpcD-------ALsspvrcgwawrtslagheaAGGVDELGF 144
                      799***99788999***************88757*******8775333323332232.......225555666677777777665577****** PP

                      -..THHHHHHHH-SEEEE--...---SHHHHHHHHTT-EEEE-TGGGTTT--.TTSS..EE--TT-HHHHHHHHHHHHH CS
  Glyco_trans_1_4  63 v..edlaellaaadvfvaPs...egfglkllEamaaglpvVatdvggiaevv.geng..llvppgdpealaeailrLle 133
                      +  +++ e l + + +++P+    g++ kll  + +g+p+V t+v++ +  +  ++   ll++  d+  +++++ rL e
       KOO23454.1 145 IsdAEMVEELLSWRAMIVPIlrsTGVNTKLLPGLQLGVPIVLTSVSASPLGIpTDDSvaLLAD--DAPTFVRQLRRLHE 221
                      *6555999999999******9766*********************765554453333225555..999*****999976 PP

>> Glyco_trans_1_2  Glycosyl transferases group 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.6   0.0   1.1e-08    0.0001       5      79 ..     164     239 ..     159     251 .. 0.80

  Alignments for each domain:
  == domain 1  score: 22.6 bits;  conditional E-value: 1.1e-08
  Glyco_trans_1_2   5 psrsespnlrlfEaaacGafaltddaegleelftpgkevilfe.dleelaekiryllanpeerraiaeaarervla 79 
                      + rs ++n++l+  +  G++++ ++ ++ +  + ++++v l + d   +++++r+l+++p e+ ++a+ ar++ ++
       KOO23454.1 164 ILRSTGVNTKLLPGLQLGVPIVLTSVSASPLGIPTDDSVALLAdDAPTFVRQLRRLHEHPLEALRLAASARRHWER 239
                      578899*************9999988555555555555555555****************************9655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (406 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1404  (0.0783089); expected 358.6 (0.02)
Passed bias filter:                      525  (0.0292822); expected 358.6 (0.02)
Passed Vit filter:                        80  (0.00446204); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.55u 0.24s 00:00:00.79 Elapsed: 00:00:00.38
# Mc/sec: 3181.23
//
Query:       KOO23455.1  [L=161]
Description: hypothetical protein Ctob_004060, partial [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    7.9e-17   61.5   0.0    9.4e-17   61.2   0.0    1.1  1  NIF       NLI interacting factor-like phosphatase


Domain annotation for each model (and alignments):
>> NIF  NLI interacting factor-like phosphatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.2   0.0   5.2e-21   9.4e-17      22     131 ..      40     148 ..      18     160 .. 0.84

  Alignments for each domain:
  == domain 1  score: 61.2 bits;  conditional E-value: 5.2e-21
         NIF  22 lkvegekvevsvlkRpgldefLkelsklyevvifTasseeyaeavidildpekkllshr..lyrescvkkkgeyvKdLsllgrdlsrvvivDdspdsfe 118
                 ++++ ++ve+ + +Rpg++efL +++ l+ v ++T++s+ey+++ +++ldp++++++    l  + +      ++K L+ l    + v+ivDdsp +++
  KOO23455.1  40 VTLRVQNVEFEMRLRPGVHEFLGQMADLFCVHLYTMGSREYVQQALHYLDPKHEIFKPGqvLAWHPA---LDRTTKTLQRLLCVPELVLIVDDSPIAWA 135
                 455567789*********************************************9887642333333...46899************************ PP

         NIF 119 lqpengipiksff 131
                  +  n++ i++f 
  KOO23455.1 136 NHVPNLVLIDRFP 148
                 ***********93 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (161 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       318  (0.0177366); expected 358.6 (0.02)
Passed bias filter:                      289  (0.0161191); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.23s 00:00:00.59 Elapsed: 00:00:00.37
# Mc/sec: 1310.67
//
Query:       KOO23456.1  [L=240]
Description: ubiquitin-activating enzyme, partial [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (240 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       328  (0.0182944); expected 358.6 (0.02)
Passed bias filter:                      287  (0.0160076); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.24s 00:00:00.62 Elapsed: 00:00:00.37
# Mc/sec: 1925.94
//
Query:       KOO23457.1  [L=376]
Description: hypothetical protein Ctob_010658 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.023   13.8   0.1      0.031   13.4   0.1    1.1  1  NHS       NHS-like


Domain annotation for each model (and alignments):
>> NHS  NHS-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.1   1.7e-06     0.031     499     587 ..      63     150 ..      44     160 .. 0.91

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 1.7e-06
         NHS 499 SeYaDlWllyidlkgvsedpykslsnsstatgttviecikseessgsrattPqvpsgevkfklaSpeKlarvaSPSSGYSSQSeTPTal 587
                 S+  D Wl+ i l +  +     l++++ + ++t+  +i +++ +   +++ ++ sg+ ++k  Sp   +r  SPSSG  S    P a+
  KOO23457.1  63 SDLHDGWLHWITLAA-ASPLIYVLVAHAINRVSTYRATIPRPVLDALMSASTRLRSGALELKRLSPAARKRALSPSSGPTSTRPAPGAS 150
                 78899*****99995.667778999*****************************************************98887777776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (376 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       326  (0.0181828); expected 358.6 (0.02)
Passed bias filter:                      241  (0.0134419); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.26s 00:00:00.68 Elapsed: 00:00:00.38
# Mc/sec: 2956.50
//
Query:       KOO23458.1  [L=759]
Description: sec14-like protein 5 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.5e-15   57.3   0.0    2.3e-15   56.7   0.0    1.3  1  CRAL_TRIO   CRAL/TRIO domain
    1.6e-12   46.0   0.1      4e-06   26.0   0.0    2.7  2  EF-hand_1   EF hand
    9.5e-09   35.6   0.1    8.3e-07   29.4   0.0    2.1  3  EF-hand_7   EF-hand domain pair
    2.2e-08   33.2   0.1     0.0086   15.5   0.0    2.6  2  EF-hand_5   EF hand
    1.7e-07   30.9   0.1    6.6e-07   29.1   0.1    2.0  2  EF-hand_8   EF-hand domain pair
    4.7e-07   29.2   0.0      0.037   13.9   0.0    2.8  2  EF-hand_6   EF-hand domain
    0.00045   20.5   0.0    0.00092   19.5   0.0    1.5  1  EF-hand_9   EF-hand domain
  ------ inclusion threshold ------
      0.068   13.4   0.2       0.14   12.4   0.2    1.4  1  Dockerin_1  Dockerin type I domain


Domain annotation for each model (and alignments):
>> CRAL_TRIO  CRAL/TRIO domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.7   0.0     1e-18   2.3e-15       5     144 ..     528     676 ..     524     679 .. 0.92

  Alignments for each domain:
  == domain 1  score: 56.7 bits;  conditional E-value: 1e-18
   CRAL_TRIO   5 eggkvgihgrDkegrpvlylrlgrfdpk....klsleelvralvlvlerllkelee.....dgqvegvtvviDlkglslskmlwkp.isllkkilkilq 93 
                  + ++gi g+D  gr v +  l+ +  +     ++ ee++r++v   e++  ++       +++  +v+ viD+ g+sl+++ +      +k+  +++ 
  KOO23458.1 528 AMHPAGIIGQDESGRLVTLDLLCATPSAtslaAFTDEEYLRHMVARREACRALCAAsaerlGRRLYKVIAVIDVAGMSLAHLADHKwHARMKRANDLFA 626
                 567789**************99977777888888899**************9998899999999**********************9************ PP

   CRAL_TRIO  94 dnyperlgkilivnaPklfkfafklvkpfldektreKikfvspsnteatle 144
                  nyp+ + +++++naP+ f++++ +++ fl   t+ Ki++++ s   ++l+
  KOO23458.1 627 WNYPDSIVQLVVINAPRTFSALWAVASLFLHTLTAAKISVHGASYG-KALK 676
                 *****************************************88765.4555 PP

>> EF-hand_1  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.4   0.0     1e-06    0.0023       2      26 ..      87     111 ..      86     114 .. 0.89
   2 !   26.0   0.0   1.8e-09     4e-06       4      27 ..     126     149 ..     123     151 .. 0.92

  Alignments for each domain:
  == domain 1  score: 17.4 bits;  conditional E-value: 1e-06
                 HHHHHHHHTTTSSSEEEHHHHHHHH CS
   EF-hand_1   2 lkeiFrefDkDgdGkIdfeEfkell 26 
                 l+ +F+++D D++G Id  E+k+++
  KOO23458.1  87 LEVAFAKVDADKSGEIDVAEMKAYI 111
                 5679*****************9875 PP

  == domain 2  score: 26.0 bits;  conditional E-value: 1.8e-09
                 HHHHHHTTTSSSEEEHHHHHHHHH CS
   EF-hand_1   4 eiFrefDkDgdGkIdfeEfkellk 27 
                 e+++ +D++++GkI+++Efk+++ 
  KOO23458.1 126 EMMATADVNKNGKINLDEFKTIMH 149
                 9*********************97 PP

>> EF-hand_7  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.0   0.0   4.9e-05      0.11      35      70 ..      76     111 ..      61     112 .. 0.79
   2 !   29.4   0.0   3.7e-10   8.3e-07       4      70 ..      87     148 ..      84     149 .. 0.86
   3 ?   -3.6   0.1       7.5   1.7e+04      17      37 ..     724     741 ..     723     754 .. 0.63

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 4.9e-05
   EF-hand_7  35 agegsklsdeelellfkefDtdkdGvisfdEFlkly 70 
                 +ge+ ++sd  le  f ++D dk+G+i+  E+++++
  KOO23458.1  76 FGEDIDKSDAGLEVAFAKVDADKSGEIDVAEMKAYI 111
                 28999999999********************99875 PP

  == domain 2  score: 29.4 bits;  conditional E-value: 3.7e-10
   EF-hand_7   4 lkeaFkelDtdgdgyldkeellrllrkifqgagegsklsdeelellfkefDtdkdGvisfdEFlkly 70 
                 l+ aF + D d++g +d++e++ ++ +       g  l d  + +++   D +k+G+i++dEF++++
  KOO23458.1  87 LEVAFAKVDADKSGEIDVAEMKAYILS-----VYGTGLNDSVVCEMMATADVNKNGKINLDEFKTIM 148
                 5668******************87777.....55555556678899999***************998 PP

  == domain 3  score: -3.6 bits;  conditional E-value: 7.5
   EF-hand_7  17 gyldkeellrllrkifqgage 37 
                 g++++++ +r+l++i q    
  KOO23458.1 724 GFMSETD-RRALERIAQE--D 741
                 7888888.5588887763..2 PP

>> EF-hand_5  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.0   5.4e-06     0.012       4      23 ..      90     109 ..      87     112 .. 0.88
   2 !   15.5   0.0   3.8e-06    0.0086       8      25 .]     131     148 ..     126     148 .. 0.90

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 5.4e-06
                 HHHHH-SS-SSCE-HHHHHH CS
   EF-hand_5   4 tFqaiDlNgDGkIskeELkt 23 
                 +F ++D++++G I++ E k+
  KOO23458.1  90 AFAKVDADKSGEIDVAEMKA 109
                 5****************986 PP

  == domain 2  score: 15.5 bits;  conditional E-value: 3.8e-06
                 H-SS-SSCE-HHHHHHHH CS
   EF-hand_5   8 iDlNgDGkIskeELktlv 25 
                 +D+N+ GkI+ +E+kt++
  KOO23458.1 131 ADVNKNGKINLDEFKTIM 148
                 8**************976 PP

>> EF-hand_8  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.1   0.1   2.9e-10   6.6e-07       2      50 ..      99     146 ..      98     149 .. 0.94
   2 ?   -3.7   0.0       5.1   1.1e+04       5      14 ..     435     444 ..     434     446 .. 0.80

  Alignments for each domain:
  == domain 1  score: 29.1 bits;  conditional E-value: 2.9e-10
   EF-hand_8   2 kgkItreelrril.rilglkkglseeevdilfrefDtdgdGkisfeEFcv 50 
                 +g+I+++e++  + ++ g+   l+++ v++++ ++D +++Gki+++EF  
  KOO23458.1  99 SGEIDVAEMKAYIlSVYGTG--LNDSVVCEMMATADVNKNGKINLDEFKT 146
                 79*********999999999..**************************86 PP

  == domain 2  score: -3.7 bits;  conditional E-value: 5.1
   EF-hand_8   5 Itreelrril 14 
                 ++++elr+++
  KOO23458.1 435 LSPAELRCAA 444
                 6899***987 PP

>> EF-hand_6  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.9   0.0   1.7e-05     0.037       3      26 ..      88     111 ..      86     116 .. 0.85
   2 !   12.1   0.0   6.6e-05      0.15      10      27 ..     132     149 ..     128     152 .. 0.91

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 1.7e-05
   EF-hand_6   3 reaFklfDkdgdGkidaeElrkal 26 
                 + aF + D d++G+id +E+++ +
  KOO23458.1  88 EVAFAKVDADKSGEIDVAEMKAYI 111
                 679*****************9843 PP

  == domain 2  score: 12.1 bits;  conditional E-value: 6.6e-05
   EF-hand_6  10 DkdgdGkidaeElrkalr 27 
                 D++++Gki+ +E++ ++ 
  KOO23458.1 132 DVNKNGKINLDEFKTIMH 149
                 9**************997 PP

>> EF-hand_9  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.5   0.0   4.1e-07   0.00092       3      63 ..      90     149 ..      88     150 .. 0.93

  Alignments for each domain:
  == domain 1  score: 19.5 bits;  conditional E-value: 4.1e-07
   EF-hand_9   3 vFevcDtqktGrVpvsrlidyLravtaqdpeeseLeelakelDPdgedasvdldtflrvmr 63 
                  F   D +k G++ v+++++y   v +   ++s + e  + +D + + ++++ld f+++m 
  KOO23458.1  90 AFAKVDADKSGEIDVAEMKAYILSVYGTGLNDSVVCEMMATADVNKN-GKINLDEFKTIMH 149
                 58889****************9999999***************9988.************6 PP

>> Dockerin_1  Dockerin type I domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.2   6.1e-05      0.14      13      46 ..     102     140 ..      94     148 .. 0.89

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 6.1e-05
                 HHHHHHHHHCT.....SSEBTTSCCCHGGGSTT-SSCES CS
  Dockerin_1  13 lDalliinyln.....qregqssssngkaaDvNgDGrvn 46 
                 +D++ ++ y++       +++   ++ ++aDvN++G++n
  KOO23458.1 102 IDVAEMKAYILsvygtGLNDSVVCEMMATADVNKNGKIN 140
                 89***********998777888899*************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (759 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       543  (0.0302861); expected 358.6 (0.02)
Passed bias filter:                      321  (0.017904); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.58u 0.23s 00:00:00.81 Elapsed: 00:00:00.39
# Mc/sec: 5862.17
//
Query:       KOO23459.1  [L=385]
Description: hypothetical protein Ctob_010663 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.064   13.2   0.1       0.19   11.6   0.1    1.8  1  DUF3248   Protein of unknown function (DUF3248)
       0.13   12.4   9.9       0.22   11.6   9.9    1.4  1  bZIP_2    Basic region leucine zipper
       0.19   10.8   0.9       0.26   10.3   0.9    1.1  1  DUF1501   Protein of unknown function (DUF1501)


Domain annotation for each model (and alignments):
>> DUF3248  Protein of unknown function (DUF3248)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.1   3.2e-05      0.19       8      29 ..      79     100 ..      73     103 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 3.2e-05
                 EEEEEEE-TTSSSEEEEEEEGG CS
     DUF3248   8 LvWRiGkaeaedevvVRvGlAs 29 
                 ++ R+G+ + e +vvVRvG A+
  KOO23459.1  79 VIGRLGHPKLEHKVVVRVGVAN 100
                 467****************996 PP

>> bZIP_2  Basic region leucine zipper
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   9.9   3.7e-05      0.22      20      50 ..     214     244 ..     212     248 .. 0.91

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 3.7e-05
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
      bZIP_2  20 RekkkakeeeleervkeLeeeNaqLrqkveq 50 
                 R++ ka  +e e+++++L+++N+qL+++ e 
  KOO23459.1 214 RQREKAAAKEREREMQQLQTRNEQLQCEKER 244
                 9*************************99776 PP

>> DUF1501  Protein of unknown function (DUF1501)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.9   4.3e-05      0.26     159     223 ..     214     279 ..     187     297 .. 0.73

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 4.3e-05
     DUF1501 159 eerqrrrldllkklnqehlqrkndeeleariasyelafra.lmqseapeafdlsdeteatreaygr 223
                 ++r++++++ +++ +q+ ++r+++ + e++  +ye+ ++  ++ s++++afd+++ +e+t+++ g 
  KOO23459.1 214 RQREKAAAKEREREMQQLQTRNEQLQCEKERVNYERQLAEiSFRSQVKAAFDVRSTAESTAQSEGS 279
                 222222333333333333377778888899999999999999******************999886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (385 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1377  (0.0768029); expected 358.6 (0.02)
Passed bias filter:                      651  (0.0363099); expected 358.6 (0.02)
Passed Vit filter:                        70  (0.00390429); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.53u 0.28s 00:00:00.81 Elapsed: 00:00:00.43
# Mc/sec: 2704.77
//
Query:       KOO23460.1  [L=69]
Description: hypothetical protein Ctob_010661 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.079   12.6   0.0      0.083   12.6   0.0    1.1  1  Tex_N     Tex-like protein N-terminal domain


Domain annotation for each model (and alignments):
>> Tex_N  Tex-like protein N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   4.6e-06     0.083      96     125 ..       3      32 ..       1      50 [. 0.78

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 4.6e-06
       Tex_N  96 lpYkpkrkTkatiArekGLeplAelileqk 125
                 l Y +krk + + A ++G +++Ae +  + 
  KOO23460.1   3 LNYHEKRKARGMLADKQGVNSIAEELQCEA 32 
                 57**********************998744 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (69 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       276  (0.0153941); expected 358.6 (0.02)
Passed bias filter:                      257  (0.0143343); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.33u 0.24s 00:00:00.57 Elapsed: 00:00:00.38
# Mc/sec: 550.05
//
Query:       KOO23461.1  [L=1022]
Description: chromatin-remodeling protein 11 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    7.6e-71  238.6   0.0    1.2e-70  238.0   0.0    1.3  1  SNF2_N           SNF2 family N-terminal domain
    1.7e-39  134.4   0.4    6.1e-39  132.6   0.4    2.0  1  SLIDE            SLIDE
    4.3e-21   75.3   0.0    3.4e-19   69.2   0.0    2.6  2  Helicase_C       Helicase conserved C-terminal domain
      2e-09   37.7   0.4    1.6e-08   34.7   0.0    2.9  5  ResIII           Type III restriction enzyme, res subunit
      2e-09   37.5   0.7    0.00016   21.8   0.2    3.2  2  Myb_DNA-binding  Myb-like DNA-binding domain
    9.1e-07   28.3   0.0    1.9e-06   27.3   0.0    1.5  1  HDA2-3           Class II histone deacetylase complex subunit
    7.8e-06   25.8   0.0    1.7e-05   24.7   0.0    1.6  1  DEAD             DEAD/DEAH box helicase
     0.0017   18.8   4.3     0.0081   16.6   4.3    2.4  1  HMG_box          HMG (high mobility group) box
     0.0034   17.1   0.0     0.0078   15.9   0.0    1.6  1  SWI2_SNF2        SWI2/SNF2 ATPase
  ------ inclusion threshold ------
       0.14   12.1   1.7       0.42   10.6   0.0    2.7  3  DUF2605          Protein of unknown function (DUF2605)


Domain annotation for each model (and alignments):
>> SNF2_N  SNF2 family N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  238.0   0.0   6.8e-74   1.2e-70      49     349 ..     206     480 ..     186     481 .. 0.87

  Alignments for each domain:
  == domain 1  score: 238.0 bits;  conditional E-value: 6.8e-74
                 HHHHHTT--EEE---TTS--HHHHHHHHH...HHTTTS---.......S-EEEE--HHHHHHHHHHHHHH-TTS-EEE--SSHHHH------------- CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
      SNF2_N  49 aeakqsvrGGiLaDemGLGKTvqvlalilaqrakeekdkekkrkdtlagptLivvPaslldqWeneierhvsssalrvlvyggqkkmkkkntkvapkll 147
                 a ++q+  +GiLaDemGLGKT+q+++l+  +r          ++++   p+L+++P+s+l++W++e+ ++++  ++  ++ +g+++ + ++    + + 
  KOO23461.1 206 ANLYQNGINGILADEMGLGKTLQCISLLCWLR----------EVKNFPAPYLVLAPKSTLTNWVREFGNWAPCFKV--CHFHGDRE-ERERLIAEELQP 291
                 67899************************333..........3556679*************************76..77777652.233234444566 PP

                 ----EEEE-HHHHHHHT......TTS-S-S-SEEEES-GGGT--TTSHHHHHHHH---S-EEEE-S--SSS-HHHHHHHHHHH-TTTT--HHHHHHHTH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
      SNF2_N 148 adydvvittYdvlsreaelqkkrsvlkqvewkrvvlDEghtlknstskaaeavskLstsnrwiltGTPiqnsledlygLlkfLreepfgekqtfdkllq 246
                  ++dv++t+Y+++ +e+       ++ +  w+++++DE+h++kn++sk+++++++++++ r+++tGTP+qn+l++l++Ll+fL +++f +++ f+++++
  KOO23461.1 292 GKFDVCVTSYEMVIKEQ------GAFRKYAWRYLIVDEAHRMKNEESKLSQVLRSFESHSRLLITGTPMQNNLHELWALLNFLLPDIFASYEQFNEWFD 384
                 89************888......9*************************************************************************** PP

                 HHHHHHHHHHHHHHHTT-STTEE---GGGT--S---EEEEEEEEE--HHHHHHHH....................HHHHHH-HHH-HHHHHHHHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
      SNF2_N 247 rpieaqaekgrsrLlqllqrlmlrrakkdveknlPpkteeiiflklskverksYnrllevlrkkalakllkrseaalkssskskekilelllelrqacn 345
                    ++ +e+ +s+L+++l++++lrr+k+dve ++Ppk+e +++ +l  +++  Y+   + l+ + +  l ++s aal++++   +++l+l+++lr++cn
  KOO23461.1 385 ISDKKVEEEVISQLHKVLKPFLLRRVKADVEGSIPPKKELVVYTRLAGMQKDQYK---KILMRD-VDALYQSSGAALTQNK---SRLLNLVMQLRKCCN 476
                 *******************************************************...333333.4444445555555555...57************* PP

                 ---X CS
                 xxxx RF
      SNF2_N 346 hpql 349
                 hp+l
  KOO23461.1 477 HPYL 480
                 **98 PP

>> SLIDE  SLIDE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  132.6   0.4   3.4e-42   6.1e-39       1     113 [.     885     995 ..     885     996 .. 0.98

  Alignments for each domain:
  == domain 1  score: 132.6 bits;  conditional E-value: 3.4e-42
       SLIDE   1 ekiikqIekgekkieklkelkellkkkveqyknplqelkikyppsnkgkkeyteeeDrfllvllakyGygnyekikkeiresplFrfDwflksrtpqel 99 
                 +ki ++Ie+ge+ki ++k++ + l+ kv++++np+q l iky  +n+gk  +te+eDrfl+++++++Gyg++e++k+e+r++p FrfDw +ksrtp el
  KOO23461.1 885 DKIARRIEEGERKIAEKKKMADSLEAKVKSCDNPWQTLSIKY-GNNRGKL-FTEDEDRFLVCMTEQLGYGKWEELKREVRRCPDFRFDWLFKSRTPIEL 981
                 79****************************************.99***99.************************************************ PP

       SLIDE 100 qkRcetLlklveke 113
                 ++R++ L++l++ e
  KOO23461.1 982 GRRVDLLIRLIQNE 995
                 **********9977 PP

>> Helicase_C  Helicase conserved C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.2   0.0     0.063   1.1e+02      40      73 ..     268     300 ..     229     304 .. 0.79
   2 !   69.2   0.0   1.9e-22   3.4e-19       3     111 .]     503     623 ..     501     623 .. 0.86

  Alignments for each domain:
  == domain 1  score: 3.2 bits;  conditional E-value: 0.063
                 TSTEEEESTTSTHHHHHHHHHHHHTTSSSEEEES CS
  Helicase_C  40 gikvavlhgelpqnereeileqfnkgesdvLiat 73 
                  +kv+ +hg+ + +er+ i e+ + g++dv +++
  KOO23461.1 268 CFKVCHFHGDREERERL-IAEELQPGKFDVCVTS 300
                 599******99888887.5556669****99886 PP

  == domain 2  score: 69.2 bits;  conditional E-value: 1.9e-22
                 HHHHHHHH.HHTTTTSEEEEEESSHHHHHH...HHHHHHHT..TSTEEEESTTSTHHHHHHHHHHHH....TTS..SSEEEESGGGTSSSTSTTESEEE CS
  Helicase_C   3 leallell.kleeeggkilifvntidrlek...vklllekk..gikvavlhgelpqnereeileqfn....kge..sdvLiatdvaerGidipkvnlVi 89 
                 +  l +ll  l++eg+++lif++ ++ l+      +l++++  ++++++++g++   +r++++++fn    kg+  + +L++t++++ Gi+++ ++ Vi
  KOO23461.1 503 MMVLDKLLlRLKKEGSRVLIFSQMTRVLDLledYAILRQRSgdDFRYCRIDGSTGGADRQDAIDAFNgkdmKGTdiFLFLLSTRAGGLGINLQTADAVI 601
                 55677786699***************776565577776666888**********************97666444545599******************* PP

                 ESSSSSSHHHHHHHHTTSSSTT CS
  Helicase_C  90 nfdlprnvtsyiqriGRtgRag 111
                 ++d ++n++   q+++R++R+g
  KOO23461.1 602 IYDSDWNPQADLQAMDRAHRIG 623
                 ********************97 PP

>> ResIII  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.2       4.1   7.3e+03      74      96 ..     129     149 ..      88     160 .. 0.52
   2 !   34.7   0.0   8.9e-12   1.6e-08       4     169 ..     194     353 ..     191     355 .. 0.76
   3 ?   -3.6   0.0       5.2   9.4e+03      35      67 ..     500     530 ..     500     556 .. 0.76
   4 ?   -2.5   0.1       2.5   4.4e+03      68     118 ..     641     670 ..     610     690 .. 0.46
   5 ?   -3.7   0.1       5.7     1e+04      68      84 ..     830     846 ..     814     871 .. 0.70

  Alignments for each domain:
  == domain 1  score: -3.2 bits;  conditional E-value: 4.1
                 GGGGTGG....GEEEESSS-B-- CS
      ResIII  74 fkkflseaykeigkkvsgdkkka 96 
                 fk+f  +a+  ++kk++g+k ++
  KOO23461.1 129 FKHFGLDAD--EKKKKKGRKSEK 149
                 333333333..333333333333 PP

  == domain 2  score: 34.7 bits;  conditional E-value: 8.9e-12
                 E-HHHHHHHHHHT......TTSEEEEEESTTSTHHHHHHHHHHHH-S......-EEEEESSHHHHHHHHHHGGGGTGG....GEEEESSS-B--..... CS
      ResIII   4 lreyQeeaienlleklkskrdkrglikmaTGtGKTlvaaklierllkkgkee.kflflvprkslleqtleefkkflseaykeigkkvsgdkkka....k 97 
                 +r+yQ   ++ l++ +  ++  +g+++ + G GKTl +++l   l++ ++     l+l+p+ +l++ + +ef +++++ +  ++ +  ++++++    +
  KOO23461.1 194 MRPYQVLGLNWLANLY--QNGINGILADEMGLGKTLQCISLLCWLREVKNFPaPYLVLAPKSTLTN-WVREFGNWAPCFK--VCHFHGDREERErliaE 287
                 7888888776666555..58889*************997665555554333349999999999876.6667766666543..33333222222244458 PP

                 ......-SEEEEEHHHHHHTH........HHHTTT-SEEEEETGGGTTS..TTTHHHHHT---SEEEEEESS- CS
      ResIII  98 ekdstnkkilvttiqsldadseeeeeeseellrdrfdviiiDEaHrlgak.kswreilekfkeavllglTATp 169
                 e +  + +++vt+++++ +++         +++ +  ++i+DEaHr++ + ++  ++l++f++  +l +T+Tp
  KOO23461.1 288 ELQPGKFDVCVTSYEMVIKEQ-------GAFRKYAWRYLIVDEAHRMKNEeSKLSQVLRSFESHSRLLITGTP 353
                 88899************9999.......788888999**********998459*******************9 PP

  == domain 3  score: -3.6 bits;  conditional E-value: 5.2
                 STHHHHHHHHHHHH-S.....-EEEEESSHHHH CS
      ResIII  35 tGKTlvaaklierllkkgkeekflflvprksll 67 
                 +GK +v+ kl  rl+k+g+  ++l++ + + +l
  KOO23461.1 500 SGKMMVLDKLLLRLKKEGS--RVLIFSQMTRVL 530
                 6899999999999999877..777766655554 PP

  == domain 4  score: -2.5 bits;  conditional E-value: 2.5
                 HHHHHHGGGGTGG....GEEEESSS-B--.......-SEEEEEHHHHHHTH CS
      ResIII  68 eqtleefkkflseaykeigkkvsgdkkkakekdstnkkilvttiqsldads 118
                 e+                    ++++    e  +++++i++ + + l+a++
  KOO23461.1 641 EKVF------------------RSEN---MELTEEEIDIMIKSAKDLTAER 670
                 1111..................1111...1124444455555555555444 PP

  == domain 5  score: -3.7 bits;  conditional E-value: 5.7
                 HHHHHHGGGGTGG.... CS
      ResIII  68 eqtleefkkflseayke 84 
                 e t++ef+kf++ + k 
  KOO23461.1 830 EWTRNEFNKFTKACEKH 846
                 55678888888877654 PP

>> Myb_DNA-binding  Myb-like DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.8   0.2   9.1e-08   0.00016       3      40 ..     830     868 ..     829     869 .. 0.95
   2 !   12.4   0.0   7.8e-05      0.14       4      30 ..     934     961 ..     931     966 .. 0.88

  Alignments for each domain:
  == domain 1  score: 21.8 bits;  conditional E-value: 9.1e-08
                      SSBHHHHHHHHHHHHHHT.TCHHHHHHHHTSS-HHHHHH CS
  Myb_DNA-binding   3 kWteeEdelLleavkkhG.nrWkkIaerlggRtekqcrs 40 
                      +Wt  E +++ +a++khG ++ k +a+++g+++ +++r 
       KOO23461.1 830 EWTRNEFNKFTKACEKHGrDKLKDVADEVGTKSVEEVRA 868
                      7*****************999****************96 PP

  == domain 2  score: 12.4 bits;  conditional E-value: 7.8e-05
                      SBHHHHHHHHHHHHHHT.TCHHHHHHHH CS
  Myb_DNA-binding   4 WteeEdelLleavkkhG.nrWkkIaerl 30 
                      +te+Ed  L++  +++G ++W++  +++
       KOO23461.1 934 FTEDEDRFLVCMTEQLGyGKWEELKREV 961
                      9********************9987766 PP

>> HDA2-3  Class II histone deacetylase complex subunits 2 and 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.3   0.0     1e-09   1.9e-06      10     266 ..     428     666 ..     421     683 .. 0.75

  Alignments for each domain:
  == domain 1  score: 27.3 bits;  conditional E-value: 1e-09
                 E---HHHHHHHHHHHHHTHHHHHHHHHSTTT--HHHH.HHHHHHHH.HHHHHHH-GGGT--TT--S-S-STTHHHHHHHT-HHHHHHHHHHHHHTTSS. CS
      HDA2-3  10 tpltelqkelteqivslhyedllkyvetsdsqeklslsikslticlenlslvanHPsLLvdHympkklllkelpeklaetSgKFkvlndlvnliierkr 108
                 t l  +qk+ +++i+      l + +     q+k      +l++++ +l+   nHP+L  +   +k+l+     ++l+++SgK+ vl +l+  + ++  
  KOO23461.1 428 TRLAGMQKDQYKKILMRDVDALYQSSGAALTQNKS----RLLNLVM-QLRKCCNHPYLF-EGAEDKSLD--PFGDHLIKNSGKMMVLDKLLLRLKKEG- 517
                 78999**************9999999777777777....4577777.899999****85.888899876..6889****************9999998. PP

                 ...EEEEEEE-STHHHHHHHHHHTTS.....SSEEEESSS--S--S---S-..................-SEEEEEEESS---TTTS--TT-S-EEEEE CS
      HDA2-3 109 ksslnvlvvakskkeldLiEalllGk.....klkikrysgeklydekkkkskdtkknsrktkeklkkkihsltihllsttrqltkdksllenikfdlii 202
                      vl+ ++  + ldL+E + + +     ++ + r +g ++  + ++         ++   ++k  +  + +++l +tr         +   +d++i
  KOO23461.1 518 ---SRVLIFSQMTRVLDLLEDYAILRqrsgdDFRYCRIDGSTGGADRQDAI-------DA--FNGKDMKGTDIFLFLLSTRAGGLG---INLQTADAVI 601
                 ...9****************9988776777799999999999999888888.......11..122333445566777777766333...444556**** PP

                 E-SST--TTSHHHHHHH--------.--EEEEEETTSHHHHHHHHTS-TT-HHHHHHHHHHHHHH CS
      HDA2-3 203 afDssvdtsspsveslrtqnrkknk.lpiirlvpinSieHvkLcfkkdedepeylekvissivvl 266
                   Ds+ +++ +   + r ++  ++k + ++r v+ +Sie      +++e ++e ++ +i+s + l
  KOO23461.1 602 IYDSDWNPQADLQAMDRAHRIGQRKeVKVFRFVTEDSIEEKVFRSENMELTEEEIDIMIKSAKDL 666
                 *********99888888776443334*************87766665555555554444444443 PP

>> DEAD  DEAD/DEAH box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.7   0.0   9.5e-09   1.7e-05      15     169 ..     213     353 ..     202     361 .. 0.72

  Alignments for each domain:
  == domain 1  score: 24.7 bits;  conditional E-value: 9.5e-09
                 CEEEEEESTTSSHHHHHHHHHHHHHHHSTTSTS-EEEEEESSHHHHHHHHHHHHHHTTTSTSEEEEEETTSSH..HHHHHHHHTT.CSEEEEEHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxx.xxxxxxxxxxxxx RF
        DEAD  15 gdvlvaaeTGsGKTlaflipvlqivyetkgktgpkalivePtreLaeqtlnnlkkfkkyidlrvlliiggvaa..rdqlskldng.vdivvgtpgrldd 110
                  + ++a e G GKTl  +i +l ++ e k+ ++   l+++P   L++  ++++ ++      +v+ + g+ ++  r   ++l+ g  d+ v+  +++++
  KOO23461.1 213 INGILADEMGLGKTLQ-CISLLCWLREVKNFPA-PYLVLAPKSTLTNW-VREFGNWAPC--FKVCHFHGDREEreRLIAEELQPGkFDVCVTSYEMVIK 306
                 466888999*****98.7777767766466666.6899*****99864.3444444443..6899888855551155567777446************9 PP

                 HHHCTSSHCTTEEEEEEETHHHHHHTTTHHHHHHHHHHSHHHCTTSTTTSEEEEEESSB CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD 111 llstgklnlsqvrflVlDEadrlldqgfsdfinrilnqlpqitcdgklqrqvivlSATl 169
                   ++g ++    r+l++DEa+r+ ++  + +++++l++++        ++  ++++ T+
  KOO23461.1 307 --EQGAFRKYAWRYLIVDEAHRMKNE--ESKLSQVLRSFE--------SHSRLLITGTP 353
                 ..9999999999************99..777777777772........22355555555 PP

>> HMG_box  HMG (high mobility group) box
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   4.3   4.5e-06    0.0081      31      68 ..       2      37 ..       1      38 [. 0.94

  Alignments for each domain:
  == domain 1  score: 16.6 bits;  conditional E-value: 4.5e-06
                HHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHH CS
     HMG_box 31 iskklgekWkalseeeKkkYeekaekekaryekekpey 68
                +sk +gekW ++  e+K +Ye+ ae++k+r+eke++ y
  KOO23461.1  2 VSKWMGEKWAQV--EDKSHYEKLAEADKHRFEKENRVY 37
                7999******99..9********************988 PP

>> SWI2_SNF2  SWI2/SNF2 ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.0   4.4e-06    0.0078      88     161 ..     287     357 ..     197     376 .. 0.66

  Alignments for each domain:
  == domain 1  score: 15.9 bits;  conditional E-value: 4.4e-06
   SWI2_SNF2  88 ellekesekiifttiqKfeeeekeklevlsereniivlvDEaHRsqyg.elakklrkalpnaafigFTGTPilkk 161
                 e+l+  + ++++t  +   +e+     ++++    +++vDEaHR + + +  +++ + ++  +++  TGTP++++
  KOO23461.1 287 EELQPGKFDVCVTSYEMVIKEQ----GAFRKYAWRYLIVDEAHRMKNEeSKLSQVLRSFESHSRLLITGTPMQNN 357
                 4444444445444444443332....33444445679*******9887334467778899999********9976 PP

>> DUF2605  Protein of unknown function (DUF2605)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0   0.00023      0.42      15      52 ..     376     413 ..     362     428 .. 0.86
   2 ?   -4.1   0.1       8.6   1.5e+04      23      45 ..     645     666 ..     642     678 .. 0.64
   3 ?   -2.0   0.0         2   3.6e+03      34      68 ..     766     798 ..     754     816 .. 0.68

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00023
     DUF2605  15 LeDfqywfersrslLekeelsflseeeqadllarvkea 52 
                  e f++wf+ s + +e+e +s l++  +  ll+rvk  
  KOO23461.1 376 YEQFNEWFDISDKKVEEEVISQLHKVLKPFLLRRVKAD 413
                 489********************************975 PP

  == domain 2  score: -4.1 bits;  conditional E-value: 8.6
     DUF2605  23 ersrslLekeelsflseeeqadl 45 
                 +  +  L++ee++++ ++++ dl
  KOO23461.1 645 RSENMELTEEEIDIMIKSAK-DL 666
                 45555688888888887654.33 PP

  == domain 3  score: -2.0 bits;  conditional E-value: 2
     DUF2605  34 lsflseeeqadllarvkeaqqeveaakaLfkatdg 68 
                  ++++ +  +dl +r  e q+e++ aka+ +a++ 
  KOO23461.1 766 FQLFDVKRISDLYER--EHQAEMRRAKAIQRAAEA 798
                 555556666666666..445577777777776654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1022 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1520  (0.0847788); expected 358.6 (0.02)
Passed bias filter:                      616  (0.0343577); expected 358.6 (0.02)
Passed Vit filter:                        67  (0.00373696); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.84u 0.31s 00:00:01.14 Elapsed: 00:00:00.46
# Mc/sec: 6731.36
//
Query:       KOO23462.1  [L=274]
Description: RNA binding protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    4.4e-16   58.4   0.0    6.8e-16   57.8   0.0    1.3  1  RRM_1         RNA recognition motif. (a.k.a. RRM, RBD, or RNP
     0.0053   16.8   0.0       0.01   15.9   0.0    1.5  1  RRM_3         RNA binding motif
  ------ inclusion threshold ------
        0.1   13.1   0.1         24    5.4   0.0    2.3  2  Phage_TAC_13  Phage tail assembly chaperone, TAC


Domain annotation for each model (and alignments):
>> RRM_1  RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.8   0.0   1.1e-19   6.8e-16       2      70 .]      35     103 ..      34     103 .. 0.98

  Alignments for each domain:
  == domain 1  score: 57.8 bits;  conditional E-value: 1.1e-19
                 EEESETTTSSHHHHHHHHHTTSCEEEEEEEEETTTSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE CS
       RRM_1   2 fVgnLppdvteeeLkelFskfGpiksiklvrdetgkskgfafVeFeskedAekAlealngkklggrelk 70 
                  V+nL++ ++++eLke+F++ G++  ++++  e+g+s g + V+F++ ++A+ A+e+l+++ l+gr++k
  KOO23462.1  35 HVKNLSFKTSWQELKEHFQQAGEVLYADVMMYEDGRSSGRGKVTFATAREAAYAIETLDETSLNGRPIK 103
                 59****************************************************************996 PP

>> RRM_3  RNA binding motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.0   1.7e-06      0.01       4      62 ..      34      97 ..      31     105 .. 0.81

  Alignments for each domain:
  == domain 1  score: 15.9 bits;  conditional E-value: 1.7e-06
                EEEEE-SSS--HHHHHHHCHCCS-ECEEE...E-TTSSE..EEEEESSHHHHHHHHHHHHHC-B CS
       RRM_3  4 lklsGlnkelsredikellsklgevayvd...yekgdke..gevrFkedeeakkalekateakl 62
                ++++ l+ ++s +++ke +++ gev y d   ye+g ++  g+v F+++ ea  a+e + e+ l
  KOO23462.1 34 VHVKNLSFKTSWQELKEHFQQAGEVLYADvmmYEDGRSSgrGKVTFATAREAAYAIETLDETSL 97
                677777888999***************9955567777762368**************9988854 PP

>> Phage_TAC_13  Phage tail assembly chaperone, TAC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.4   0.0    0.0041        24      30      49 ..      32      51 ..      25      88 .. 0.82
   2 ?    5.3   0.0    0.0043        26       7      81 ..     142     218 ..     137     224 .. 0.68

  Alignments for each domain:
  == domain 1  score: 5.4 bits;  conditional E-value: 0.0041
  Phage_TAC_13 30 atvyvrklsfktaeadlkal 49
                   +v+v+ lsfkt  ++lk+ 
    KOO23462.1 32 EHVHVKNLSFKTSWQELKEH 51
                  57**********99998864 PP

  == domain 2  score: 5.3 bits;  conditional E-value: 0.0043
  Phage_TAC_13   7 glfvgkpvekeikwkqgegeeltatvyvrkls.....fktaeadlkalkkkedkvAariaaSicdekGkpvftvdditge 81 
                    ++++k  +k i+  +   +e+t ++ vr        ++++   l + +++  kvA+ +  +i d+  + +f+ +di ge
    KOO23462.1 142 ISSSSKEWRKHIECYE---DEATKETVVRLYEtdvvrIGVQDITLDSGGTEDLKVAEEVFQCINDALAQYTFELKDIRGE 218
                   5566777778887777...3455555555543111114455555666666666***********************9875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (274 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       487  (0.0271627); expected 358.6 (0.02)
Passed bias filter:                      416  (0.0232026); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.42u 0.23s 00:00:00.65 Elapsed: 00:00:00.38
# Mc/sec: 2177.98
//
Query:       KOO23463.1  [L=145]
Description: alpha,alpha-trehalose-phosphate synthase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    0.00056   19.6   0.0    0.00089   19.0   0.0    1.2  1  Dimer_Tnp_hAT  hAT family C-terminal dimerisation region


Domain annotation for each model (and alignments):
>> Dimer_Tnp_hAT  hAT family C-terminal dimerisation region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.0   0.0   4.9e-08   0.00089      34      82 ..      25      73 ..      19      75 .. 0.84

  Alignments for each domain:
  == domain 1  score: 19.0 bits;  conditional E-value: 4.9e-08
                   HHHHHHHHHHHTS-S-TTTTHHHHHHTHHHHH-TTT---HHHHHHHHHH CS
  Dimer_Tnp_hAT 34 PnlsklardvLsipvssaasErsFstlgkvllesrnsleplnveallci 82
                    +  +l+ + L ip+ + ++Er Fs +    +  rns+ ++n++ l+ +
     KOO23463.1 25 TWQLRLVVISLLIPADTSECERIFSLMNDLKTAERNSMGQQNLKNLMLW 73
                   555678888899***************9999999999999999988876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (145 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       358  (0.0199677); expected 358.6 (0.02)
Passed bias filter:                      318  (0.0177366); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.35u 0.22s 00:00:00.56 Elapsed: 00:00:00.36
# Mc/sec: 1210.15
//
Query:       KOO23464.1  [L=284]
Description: hypothetical protein Ctob_002377 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
        2.9    6.0  12.2        4.4    5.4  12.2    1.2  1  Spc7_N    N-terminus of kinetochore NMS complex subunit Spc7


Domain annotation for each model (and alignments):
>> Spc7_N  N-terminus of kinetochore NMS complex subunit Spc7
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.4  12.2   0.00025       4.4     140     185 ..      46      91 ..      33      98 .. 0.84

  Alignments for each domain:
  == domain 1  score: 5.4 bits;  conditional E-value: 0.00025
      Spc7_N 140 lrteeeeqaaarEreekerrerEkkaileqReARRKSlAnRRVSFA 185
                 l ++ +++aaa E+ ekerre E+  i  +R ARR  l    VS A
  KOO23464.1  46 LAQKADREAAAAEKAEKERREAERLRIEAERVARRLKLEAGLVSEA 91 
                 56788999***************************87766666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (284 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1126  (0.0628033); expected 358.6 (0.02)
Passed bias filter:                      437  (0.0243739); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.22s 00:00:00.67 Elapsed: 00:00:00.36
# Mc/sec: 2361.49
//
Query:       KOO23465.1  [L=550]
Description: chorismate mutase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.1e-09   38.4   0.0    3.6e-09   36.7   0.0    1.8  2  PDT       Prephenate dehydratase
    8.6e-06   25.4   0.1      3e-05   23.7   0.0    2.0  2  ACT       ACT domain
  ------ inclusion threshold ------
       0.12   12.9   0.0       0.44   11.2   0.0    1.9  2  ACT_4     ACT domain
       0.16   11.9   0.0       0.31   10.9   0.0    1.4  1  ACT_5     ACT domain
       0.26   11.3   1.2        1.4    8.9   0.0    2.8  4  ACT_6     ACT domain
       0.26   11.2   1.2        4.1    7.4   0.3    2.9  3  Gemin7    Gem-associated protein 7 (Gemin7)


Domain annotation for each model (and alignments):
>> PDT  Prephenate dehydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.0      0.59   1.8e+03     143     176 ..     143     176 ..     134     182 .. 0.77
   2 !   36.7   0.0   1.2e-12   3.6e-09       1     119 [.     245     366 ..     245     417 .. 0.88

  Alignments for each domain:
  == domain 1  score: -1.4 bits;  conditional E-value: 0.59
                 TEEEEE-HHHHHHTT-EEEECS-SS-S--EEEEE CS
         PDT 143 daaaiasevaaelyglkvleeniedkknntTRFl 176
                 d aa+ +     +yg++v e++   +++ +TR +
  KOO23465.1 143 DIAALQAISKRVHYGFYVAESKFRAQPEQYTRLI 176
                 45666666666789999***********999966 PP

  == domain 2  score: 36.7 bits;  conditional E-value: 1.2e-12
                 EEEES-TTSHHHHHHCCCS...........EEEEES-HHHHHHHHCTTS-SEEEEEEEESSS-B-HHHHHHHHH.SSEEEEEEEEEE---EEEE-TT-- CS
         PDT   1 vaylGpegtyshqAalkvf......kaedvelipvasieevfeavekgeadyavvPiENsteGsVnetlDlLlkesdlkivgEvvlpiehcLlakpktk 93 
                 +a+ G +g+  h+ + + f      ++    li ++++ +vf av  ++a++++v +E   +G    t  lL++ s+l++vgEvv + +++L ak +  
  KOO23465.1 245 IAHHGAPGSACHKGTVHRFvrscpkGKAAPLLIRCSNVADVFGAVMANRATFGMVLLEQGDSGVLAVTRSLLRE-SSLRVVGEVVHDARFALYAKAAL- 341
                 5667777777777777666676664445556799****************************************.99***************877665. PP

                 TTT--EEEE-HHHHHHTHHHHHH-.T CS
         PDT  94 leeikkvyShpqalgQcrkfLeehlp 119
                  + +++v + p +l+ c  +L+  l 
  KOO23465.1 342 -SAVRRVRARPGVLRLCAGWLADVLA 366
                 .********************98754 PP

>> ACT  ACT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.1       2.7     8e+03       6      14 ..     346     354 ..     344     355 .. 0.80
   2 !   23.7   0.0   9.9e-09     3e-05       9      52 ..     455     497 ..     446     502 .. 0.82

  Alignments for each domain:
  == domain 1  score: -3.3 bits;  conditional E-value: 2.7
                 EEESSTTHH CS
         ACT   6 gvpDrPGlL 14 
                 +v+ rPG+L
  KOO23465.1 346 RVRARPGVL 354
                 57889***9 PP

  == domain 2  score: 23.7 bits;  conditional E-value: 9.9e-09
                 SSTTHHHHHHHHHHHTTSEEEEEEEEEESTTECEEEEEEEEEEH CS
         ACT   9 DrPGlLarvfgaladrgiNidsieqrssedkvagivfvvivvde 52 
                 D PG La++++++ + g+N++si+++ s    a+ +++++++d 
  KOO23465.1 455 DSPGSLAQILAVFHEQGVNLRSIQSYASLQD-AHMTDFFLEADG 497
                 99************************99876.777777777665 PP

>> ACT_4  ACT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.0       5.5   1.6e+04      11      29 ..     176     194 ..     176     197 .. 0.76
   2 ?   11.2   0.0   0.00015      0.44      13      42 ..     453     482 ..     449     492 .. 0.87

  Alignments for each domain:
  == domain 1  score: -3.5 bits;  conditional E-value: 5.5
       ACT_4  11 veaedrkglLaditqvise 29 
                 +ea d+ g++  +t++  e
  KOO23465.1 176 IEAGDEEGIMELLTNAAVE 194
                 6788999999988887655 PP

  == domain 2  score: 11.2 bits;  conditional E-value: 0.00015
       ACT_4  13 aedrkglLaditqviseekanivsvnaktr 42 
                 ++d++g La+i++v+ e+++n++s+++ + 
  KOO23465.1 453 SSDSPGSLAQILAVFHEQGVNLRSIQSYAS 482
                 68***********************98765 PP

>> ACT_5  ACT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0    0.0001      0.31       1      43 [.     455     498 ..     455     507 .. 0.86

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.0001
       ACT_5   1 dapgvLeRvlrvvrrrgFevkslnmst.tedggtvrieltVese 43 
                 d+pg L  +l v+   g++++s+++ +  +d+++++  l+ +++
  KOO23465.1 455 DSPGSLAQILAVFHEQGVNLRSIQSYAsLQDAHMTDFFLEADGH 498
                 68***********************9977888888777777765 PP

>> ACT_6  ACT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   0.0       3.5     1e+04      55      73 ..     194     212 ..     185     213 .. 0.76
   2 ?   -1.2   0.0       0.7   2.1e+03      29      49 ..     281     301 ..     279     321 .. 0.72
   3 ?   -3.2   0.0       2.9   8.6e+03      43      67 ..     410     434 ..     406     437 .. 0.75
   4 ?    8.9   0.0   0.00048       1.4       3      33 ..     447     477 ..     445     480 .. 0.87

  Alignments for each domain:
  == domain 1  score: -3.4 bits;  conditional E-value: 3.5
       ACT_6  55 larlekaLlflakelgltv 73 
                 ++r+++ ++ +a ++g ++
  KOO23465.1 194 EQRVLQRVRLKASTFGQEI 212
                 6788888999998888776 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 0.7
       ACT_6  29 nilDieqavihgrlsLgllvs 49 
                 n++D+  av  +r ++g+++ 
  KOO23465.1 281 NVADVFGAVMANRATFGMVLL 301
                 688999999999999999864 PP

  == domain 3  score: -3.2 bits;  conditional E-value: 2.9
       ACT_6  43 sLgllvsgpedalarlekaLlflak 67 
                 +L ll s+p++ ++  ++ +l +a+
  KOO23465.1 410 ALQLLASAPDSLSEYARSLVLAKAR 434
                 7899999998888777777777766 PP

  == domain 4  score: 8.9 bits;  conditional E-value: 0.00048
       ACT_6   3 llitvtGpdrpGltasLtsvlaefgvnilDi 33 
                 ll+  t +d pG +a++++v +e gvn+  i
  KOO23465.1 447 LLLFSTSSDSPGSLAQILAVFHEQGVNLRSI 477
                 55666899******************98776 PP

>> Gemin7  Gem-associated protein 7 (Gemin7)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.0   0.1      0.14   4.1e+02      61      74 ..      13      26 ..       9      28 .. 0.85
   2 ?   -3.3   0.0       2.9   8.6e+03      26      47 ..      61      83 ..      54      91 .. 0.72
   3 ?    7.4   0.3    0.0014       4.1       5      37 ..     312     343 ..     310     348 .. 0.90

  Alignments for each domain:
  == domain 1  score: 1.0 bits;  conditional E-value: 0.14
      Gemin7 61 ikeAllRssDiisi 74
                i++Al+R +D i +
  KOO23465.1 13 IRSALIRQEDTIIF 26
                789********977 PP

  == domain 2  score: -3.3 bits;  conditional E-value: 2.9
      Gemin7 26 eftllektevsaefk.gvdidee 47
                +f lle  ++ a+ +  + +de 
  KOO23465.1 61 DFMLLETERLHARVRrYTSPDEH 83
                78999999999965414455555 PP

  == domain 3  score: 7.4 bits;  conditional E-value: 0.0014
      Gemin7   5 arafLRerfLrslkalvgkpveftllektevsa 37 
                 +r++LRe  Lr++ ++v+ +++f l+ k+ +sa
  KOO23465.1 312 TRSLLRESSLRVVGEVVH-DARFALYAKAALSA 343
                 69*************996.79*******99998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (550 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       255  (0.0142228); expected 358.6 (0.02)
Passed bias filter:                      231  (0.0128842); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.48u 0.24s 00:00:00.72 Elapsed: 00:00:00.38
# Mc/sec: 4300.73
//
Query:       KOO23466.1  [L=1306]
Description: protein serine threonine kinase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    8.2e-72  241.7   0.0    1.5e-71  240.9   0.0    1.4  1  Pkinase         Protein kinase domain
    9.3e-51  172.6   0.0    2.5e-50  171.2   0.0    1.7  2  Pkinase_Tyr     Protein tyrosine kinase
    1.5e-06   27.3   0.0    2.4e-06   26.6   0.0    1.2  1  Pkinase_fungal  Fungal protein kinase
     0.0003   19.2   2.2     0.0004   18.8   0.1    2.1  2  DRIM            Down-regulated in metastasis
     0.0027   17.1   0.0     0.0063   15.9   0.0    1.5  1  Kinase-like     Kinase-like
  ------ inclusion threshold ------
      0.034   13.7   0.0      0.092   12.3   0.0    1.7  1  RIO1            RIO1 family
      0.048   13.7   3.6         39    4.5   0.1    5.1  6  Arm             Armadillo/beta-catenin-like repeat


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  240.9   0.0   5.9e-75   1.5e-71       2     264 .]      17     269 ..      16     269 .. 0.96

  Alignments for each domain:
  == domain 1  score: 240.9 bits;  conditional E-value: 5.9e-75
                 EEEEEEEEESSEEEEEEEETTTTEEEEEEEEECHCHCHHHHHHHHHHHHHHHHHSCTTB--EEEEEEESSEEEEEEE--TTEBHHHHHHHHSS--HHHH CS
     Pkinase   2 ekleklGeGsfGkVykaveketgkivAvKkikkekakkkkekkvlrEikilkklkhpnivrlyevfeekdelylvleyveggeladllerkgslseeea 100
                 +   ++G+G++G Vyka++ +tg +vA+Kk++ + ++ ++ + ++rEi +lk lk p+iv++ e+f++ d+ly+v+e+ve+g+l++++++ g+l e+ +
  KOO23466.1  17 SLADEIGKGASGIVYKALNMQTGGMVAIKKVALRGESRDQLQLLQREIDLLKLLKNPYIVEYRESFNTADTLYIVMEFVENGSLQSIVRKFGKLRESLV 115
                 66789*********************************999********************************************************** PP

                 HHHHHHHHHHHHHHHHTTEE-SS-SGGGEEEETTTEEEE-SGTTSEESSSSCS..BCTTTSCGGGS-HHHHTTSCBSHHHHHHHHHHHHHHHHHSS-ST CS
     Pkinase 101 kkiakqilegleylHskgiiHrDlKpeNiLidekgelKitDFGlakelesssk..ltsfvgtseYlAPEvlkeneyskkvDvWslGvilyelltgkppf 197
                 + ++ q+legl++lH++g+iHrD+K +NiLi++ g++K++DFG+a++ e + +  ++s+vgt++++APE+++ +++++++D+WslG++++el++g+pp+
  KOO23466.1 116 SIYILQVLEGLNFLHDQGVIHRDIKGANILISTGGQVKLADFGVAAKHEDGLDtqANSVVGTPYWMAPEIIQMTGFTTAADIWSLGCTIVELIAGEPPY 214
                 *************************************************9988889******************************************* PP

                 TTSSHHHHHHHHHHTHHHHHHHCTSHH...HHHTTS-HHHHHHHHHHT-SSGCCSTTHHHHHTSGGG CS
     Pkinase 198 sgekgkekvekeldqlekilkilgetkeklpeaseiseeakdllkkllkkdpkkRltaeellqhpyl 264
                 +          +l  + ++++i++  +++ p +  ise + ++l  ++kkdp++R+ta++l++h +l
  KOO23466.1 215 A----------DLPPMAALFRIVN--EQSPPIPPGISERLHQFLMLCFKKDPNQRPTARKLKSHAWL 269
                 *..........6667777788874..5899999*********************************7 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  171.2   0.0   9.9e-54   2.5e-50       3     257 ..      18     265 ..      16     267 .. 0.94
   2 ?   -2.8   0.0       1.2     3e+03      74      95 ..    1175    1196 ..    1163    1210 .. 0.79

  Alignments for each domain:
  == domain 1  score: 171.2 bits;  conditional E-value: 9.9e-54
                  EEEEEEEESSEEEEEEEEETTTTSSEEEEEEEEES.TTSSHHHHHHHHHHHHHHHTS-BTTB--EEEEEESSSSEEEEEE--TTEBHHHHHHHTCTTT CS
  Pkinase_Tyr   3 lgkklGeGafGkVvegtlkgekekkevkVavKtlk.eeateeekeelleeakimkklkhpnivkllgvctkeepllivteyvkgGdLlkfLrkkekek 99 
                  l +++G+Ga G V+++       ++   Va+K++  ++ ++++ + l +e++++k lk+p iv++      +++l+iv+e+v++G+L++ +rk    k
   KOO23466.1  18 LADEIGKGASGIVYKALNM----QTGGMVAIKKVAlRGESRDQLQLLQREIDLLKLLKNPYIVEYRESFNTADTLYIVMEFVENGSLQSIVRKF--GK 109
                  6789************999....8999*****99625666666777888*******************************************98..99 PP

                  SBHHHHHHHHHHHHHHHHHHHHTTEEEST-SGGGEEEEETTEEEE-STTTHEETTTSSEEEETTSSTSGGGGS-HHHHHHSEEEHHHHHHHHHHHHHH CS
  Pkinase_Tyr 100 ltlkdllsfalqvAkGmeyLeskklvHrdlaarNvLlsenkvvkisDfGLardiekddeyvkkeeaklpvkWmapEslkekkftsksDvWsfGvllwE 197
                  l+ + +  ++lqv +G+++L+++ ++Hrd+   N+L+s++ +vk++DfG+a ++ +d   +++++      WmapE+++ + ft+++D+Ws G ++ E
   KOO23466.1 110 LRESLVSIYILQVLEGLNFLHDQGVIHRDIKGANILISTGGQVKLADFGVAAKH-EDGLDTQANSVVGTPYWMAPEIIQMTGFTTAADIWSLGCTIVE 206
                  *9999999********************************************99.7777788888888999*************************** PP

                  HHTTSSGTTTTSHHHHHHHHHHTTEES-BBTTSBHHHHHHHHHHT-SSGGGS--HHHHHH CS
  Pkinase_Tyr 198 iftlgespypglkneevleklkegkrlekpekcpeelyelmkkcweedpeeRptfselve 257
                  ++  ge py++l ++ +l ++ +++  + p  ++e+l+++++ c+++dp++Rpt ++l +
   KOO23466.1 207 LIA-GEPPYADLPPMAALFRIVNEQSPPIPPGISERLHQFLMLCFKKDPNQRPTARKLKS 265
                  **9.**************************************************999875 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 1.2
                   SSEEEEEE--TTEBHHHHHHHT CS
  Pkinase_Tyr   74 epllivteyvkgGdLlkfLrkk 95  
                    +l++v+e  + G+++++L++ 
   KOO23466.1 1175 AQLCVVMEVKHMGTFSNMLNAL 1196
                   5699*********999999875 PP

>> Pkinase_fungal  Fungal protein kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.6   0.0   9.2e-10   2.4e-06     312     397 ..     119     197 ..     100     200 .. 0.82

  Alignments for each domain:
  == domain 1  score: 26.6 bits;  conditional E-value: 9.2e-10
  Pkinase_fungal 312 lrDaIkghrsLflkagiLHrDiSenNilitdskkegerkglLiDLDlakelsddssesgarertGTleFmaievlkgeeHsyrhDL 397
                     + ++++g++ L+ ++g++HrDi   Nili       + +  L+D+ +a +++d   + +a+  +GT+++ma e+++ +  +   D+
      KOO23466.1 119 ILQVLEGLNFLH-DQGVIHRDIKGANILIS-----TGGQVKLADFGVAAKHED-GLDTQANSVVGTPYWMAPEIIQMTGFTTAADI 197
                     468999******.*****************.....789999***********7.55667799************997666666665 PP

>> DRIM  Down-regulated in metastasis
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.8   0.1   1.6e-07    0.0004     330     470 ..     906    1039 ..     892    1088 .. 0.74
   2 ?   -1.0   0.4      0.16     4e+02     434     503 ..    1230    1300 ..    1186    1304 .. 0.67

  Alignments for each domain:
  == domain 1  score: 18.8 bits;  conditional E-value: 1.6e-07
        DRIM  330 pavielLsapkakesVvefvldivenllkladeeeeeeedeeeigselLlphvsslLeylsalleksaaskkdkskellereleiLsrl...aplve 423 
                  pa+++lL +p+   ++v +++d ++ +l+l ++++     +++  +++++  + +lL  l+a++   a   +    ++++r  e++++l    + v+
  KOO23466.1  906 PALVALLVNPSSAREIVIRAIDAIKAVLDLRSSRTP----RNDLCRTFVEHEILELL--LPAIIDINA---E--YPRHADRGAEVVLQLssaDTAVK 991 
                  89***************************9877655....34555555554444443..333332221...1..24455555555555543378899 PP

        DRIM  424 dseqassLldlllplLrkpsrrvsektkvelLkilenllrlyde..dev 470 
                  +   ++++l  l++lL  p+ +  ++ +v++L+++++l   + +  de 
  KOO23466.1  992 TRMATRKVLPGLMQLLAAPD-EFAPELQVKILRTIKHLCMGEASymDEL 1039
                  999999************99.999999***********98755554444 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 0.16
        DRIM  434 lllplLrkpsrrvsektkvelLkilenllrlyde.devdlpekllktlsslfsrlkdreaRklLcevlkal 503 
                  l+   L++ s+ ++  ++  lL+il++++r+++e ++  + ++l   l    ++ k   +R++ +e+++++
  KOO23466.1 1230 LSSNGLERRSHPLDALVRRLLLTILTEIYRKHQEpKQLVKLHHLSALLKGIIDQDKAVLVRQVASELFESF 1300
                  44455777777888888888888888888885555444444444444444555555556677777777666 PP

>> Kinase-like  Kinase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.0   2.5e-06    0.0063     148     244 ..     118     208 ..      91     222 .. 0.73

  Alignments for each domain:
  == domain 1  score: 15.9 bits;  conditional E-value: 2.5e-06
  Kinase-like 148 llTlqlirlaanLqakglvhgkftvdnllldekgglmlggftaLvragtkvvl..seve..kgfaPpEllgsrggytrknktkmthkldaWqlGlviy 241
                  ++ lq++     L+++g++h +++  n+l    g+++l +f+   +  +      ++v     +  pE++         + t +t + d W lG +i 
   KOO23466.1 118 YI-LQVLEGLNFLHDQGVIHRDIKGANILISTGGQVKLADFGVAAKHEDGLDTqaNSVVgtPYWMAPEII---------QMTGFTTAADIWSLGCTIV 205
                  44.678888889*****************************98887766655311333311223344444.........45889************98 PP

  Kinase-like 242 riw 244
                   + 
   KOO23466.1 206 ELI 208
                  765 PP

>> RIO1  RIO1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   3.6e-05     0.092      82     155 ..      89     163 ..      52     170 .. 0.82

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 3.6e-05
                 EEEEE--EETTEEGGBHHHCG-.HHHHHHHHHHHHHHHHHHHHTSTEEESS-STTSEEEETT.EEEE--GTTEEET CS
        RIO1  82 vlvmefigedgvaapklkdvee.eeeaeelyeevleemrklykeaglvHaDLSeyNvlvded.kvviIDvsQavel 155
                  +vmef++ +g     +++  + +e + ++y   + e   +++++g++H D+   N+l++++ +v + D++ a ++
  KOO23466.1  89 YIVMEFVE-NGSLQSIVRKFGKlRESLVSIYILQVLEGLNFLHDQGVIHRDIKGANILISTGgQVKLADFGVAAKH 163
                 59******.8888888999995588888888766666777888******************999999999865554 PP

>> Arm  Armadillo/beta-catenin-like repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.0       2.2   5.7e+03       9      27 ..     812     830 ..     808     832 .. 0.75
   2 ?   -1.9   0.1       1.5   3.9e+03      17      33 ..     837     857 ..     835     857 .. 0.79
   3 ?    4.5   0.1     0.015        39       7      25 ..     898     916 ..     894     929 .. 0.76
   4 ?    0.5   0.0      0.28   7.1e+02      13      40 ..     999    1029 ..     997    1030 .. 0.73
   5 ?    4.2   0.0     0.019        48       7      41 .]    1038    1077 ..    1037    1077 .. 0.83
   6 ?   -1.8   0.0       1.4   3.6e+03       4      22 ..    1123    1141 ..    1120    1143 .. 0.83

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 2.2
                 HHTTHHHHHHHHTTTSSHH CS
         Arm   9 ieaGavppLvrLLssedee 27 
                 ++  ++ pLv+ Ls  +e+
  KOO23466.1 812 VSEHGLLPLVHELSEASES 830
                 56778999***99966665 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 1.5
                 HHHHTT....TSSHHHHHHHH CS
         Arm  17 LvrLLs....sedeevqeeAa 33 
                 L+rLL+    ++ + v+e+A+
  KOO23466.1 837 LLRLLNavlrHGGPAVCEQAC 857
                 5666666667999******98 PP

  == domain 3  score: 4.5 bits;  conditional E-value: 0.015
                 HHHHTTHHHHHHHHTTTSS CS
         Arm   7 avieaGavppLvrLLssed 25 
                 + i +++ p+Lv+LL +++
  KOO23466.1 898 MFIACNGPPALVALLVNPS 916
                 5688***********9443 PP

  == domain 4  score: 0.5 bits;  conditional E-value: 0.28
                  HHHHHHHHTT...TSSHHHHHHHHHHHHHHT CS
         Arm   13 avppLvrLLs...sedeevqeeAawALsNLa 40  
                  ++p L++LL       +e+q  +++++ +L+
  KOO23466.1  999 VLPGLMQLLAapdEFAPELQVKILRTIKHLC 1029
                  7999******666666677766666666666 PP

  == domain 5  score: 4.2 bits;  conditional E-value: 0.019
                  HHHHTTHHHHHHHHTT.....TSSHHHHHHHHHHHHHHTT CS
         Arm    7 avieaGavppLvrLLs.....sedeevqeeAawALsNLaa 41  
                  ++ +a a+p+L+ LL+         e++ +++ +L  L++
  KOO23466.1 1038 ELQRAKAIPHLIGLLRlqrggPHFAEMRNQCVNTLYLLCR 1077
                  567899*********9988888888888888888887775 PP

  == domain 6  score: -1.8 bits;  conditional E-value: 1.4
                  HHHHHHHTTHHHHHHHHTT CS
         Arm    4 nkdavieaGavppLvrLLs 22  
                   + ++ ++++v+  + LLs
  KOO23466.1 1123 ARAELKQYNGVQFYLGLLS 1141
                  578899******9999998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1306 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       586  (0.0326845); expected 358.6 (0.02)
Passed bias filter:                      442  (0.0246528); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.80u 0.27s 00:00:01.07 Elapsed: 00:00:00.40
# Mc/sec: 9711.12
//
Query:       KOO23467.1  [L=250]
Description: proteasome subunit alpha type-4-like protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.3e-57  193.1   0.2    5.2e-57  192.4   0.2    1.3  1  Proteasome      Proteasome subunit
    6.8e-14   51.2   0.1    1.3e-13   50.4   0.1    1.5  1  Proteasome_A_N  Proteasome subunit A N-terminal signature


Domain annotation for each model (and alignments):
>> Proteasome  Proteasome subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  192.4   0.2   5.8e-61   5.2e-57       2     189 ..      29     215 ..      28     216 .. 0.96

  Alignments for each domain:
  == domain 1  score: 192.4 bits;  conditional E-value: 5.8e-61
                 HHS-EEEEEEETTEEEEEEEEEEEETTEEEESSS.STSEEEEETTEEEEEEESHHHHHHHHHHHHHHHHHHHHHHSSGTCHHHHHHHHHHHHHHHHHHC CS
  Proteasome   2 kkGttvvGikgkdgvvlaadkratagskllskst.veKifkiddhigvafaGlaaDartlvrraraeaqlyrlrygrpipverlvarvaaklqaytqrs 99 
                 ++++t++Gi ++dg+vlaa+k++t  skll++++  eK++ id+hi+va+aG +aDa++l+++ar++aq+yr+ ++++ pve+lv+ +++ +qaytq++
  KOO23467.1  29 SHAGTAIGILASDGIVLAAEKKLT--SKLLEPTKsSEKMYMIDEHIAVAVAGITADANILINQARMHAQRYRFAFQEQQPVEQLVQTLCDEKQAYTQYG 125
                 799*********************..9999887658*************************************************************** PP

                 TTTTTSEEEEEEEEETTTEEEEEEEETTSEEEEESSEEEESTTHHHHHHHHHHHH.STTBSHHHHHHHHHHHHHHHHHHBTTSCSSEEEEE CS
  Proteasome 100 grrpfgvslliagvdeeggpeLyqidpsGsyieekdavaiGsgseaaktalekey.kedltleeavelavkalkealerdklsgknievav 189
                 g rpfgvs+l+ag+d++ g +Lyq dpsG+y ++k a++iG + ++a++++++ey  e + l  a++la k+l ++ +  +l+ +++++a+
  KOO23467.1 126 GLRPFGVSMLYAGWDKTYGFQLYQSDPSGNYNGWK-ATCIGANNQSAMSLMKQEYkDEVIPLSAALQLAMKVLTKTCDATSLTADKFDLAT 215
                 **********************************8.*******************6666999*************************9987 PP

>> Proteasome_A_N  Proteasome subunit A N-terminal signature
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.4   0.1   1.4e-17   1.3e-13       1      23 []       5      27 ..       5      27 .. 0.99

  Alignments for each domain:
  == domain 1  score: 50.4 bits;  conditional E-value: 1.4e-17
  Proteasome_A_N  1 YDrslttFSPdGRLfQVEYAmkA 23
                    YD+ +t+FSP+GRL+QVEYAm+A
      KOO23467.1  5 YDSRTTIFSPEGRLYQVEYAMEA 27
                    9*********************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (250 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       735  (0.040995); expected 358.6 (0.02)
Passed bias filter:                      478  (0.0266607); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.40u 0.21s 00:00:00.61 Elapsed: 00:00:00.35
# Mc/sec: 2167.35
//
Query:       KOO23468.1  [L=194]
Description: gdsl-like lipase acylhydrolase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    4.6e-09   36.9   0.0    5.9e-09   36.6   0.0    1.1  1  Lipase_GDSL_2  GDSL-like Lipase/Acylhydrolase family
    3.4e-08   33.7   0.0    4.3e-08   33.4   0.0    1.1  1  Lipase_GDSL    GDSL-like Lipase/Acylhydrolase
     0.0025   17.6   0.1     0.0041   17.0   0.1    1.3  1  Adeno_PX       Adenovirus late L2 mu core protein (Protein X)


Domain annotation for each model (and alignments):
>> Lipase_GDSL_2  GDSL-like Lipase/Acylhydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.6   0.0   9.9e-13   5.9e-09      57     178 ..      17     181 ..       5     182 .. 0.66

  Alignments for each domain:
  == domain 1  score: 36.6 bits;  conditional E-value: 9.9e-13
                    CTGGG-TSEEEEE--CCCCCTT--HHHHHHH...................HHHHHHHHCCC......G.EEECEEEEE-TTT-TTSTCCHHHHHHH CS
  Lipase_GDSL_2  57 dllrlkpdlvtiliGtNDlgrgvpaaaaaand.................nleelidalraa...apga.rilvlgplpptpeaaadarelnaviaa 131
                    +l++ k+d+vti++GtND++ +++ +    ++                 ++  +i+ + ++   ++++ +i+ l+++pp +e+ a+   +  ++  
     KOO23468.1  17 TLTTNKWDIVTIMLGTNDAKDPGSHGPNNWPHdcgtptapkiwdcqfaaDYNDMIEVVSTLgteSGKPpKIY-LMVPPPLMEDNAYGMNRTVINSL 111
                    5778899***********666666555554446666668889999999956666665555544455553666.66666666666666665677777 PP

                    HHHHHHHHHHH..CT-EEE-H......HHHHHHCCCCCGGBBTTS.................SSB-HHHHH CS
  Lipase_GDSL_2 132 ynealrevaae..egvpfvDl......hdaladsgerladlladdg................lHPnaaGyr 178
                    y  ++  +aa+       +D+       + ++ ++ ++++  a d+                +HPn++Gy+
     KOO23468.1 112 YPVLVPMIAAAnsAVTGIIDMfipmggEHQWETDP-DWPTTCAKDSeypacgfycdaqscdqCHPNDKGYK 181
                    77777777777434555899966666533333333.333444444489999999999*************7 PP

>> Lipase_GDSL  GDSL-like Lipase/Acylhydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.4   0.0   7.1e-12   4.3e-08      67     198 ..      20     185 ..       3     187 .. 0.83

  Alignments for each domain:
  == domain 1  score: 33.4 bits;  conditional E-value: 7.1e-12
                  HCTTSEEEEE--CTCC............-EECSSCTTT..CEEHHHHHHHHHHHHHHHHHHHHTTEEEEEEE-SSTCHCTCCCCHCCHHHHHHHHHHH CS
                  xxxxxxxxxxxxxxxx............xxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Lipase_GDSL  67 alhpdlviislGtNDs............nlgkkstdaa..kkeaeeyiknlreaikelkeegapkaivvlvsppglgpqeekdakklgekgnefvgey 150
                   ++ d+v+i+lGtND               ++ +t +     + ++ ++++ e ++ l  e+ + ++++l+ pp+l +       + +   ++++++ 
   KOO23468.1  20 TNKWDIVTIMLGTNDAkdpgshgpnnwpHDCGTPTAPKiwDCQFAADYNDMIEVVSTLGTESGKPPKIYLMVPPPLME------DNAYGMNRTVINSL 111
                  57889********************77744444444442244455666666666889998888***************......88999999****** PP

                  HHHHHHHHHHCTEEEECHHHHHHHTHCCGCHCH............................TSSSB-HHHHHHHHH CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx............................xxxxxxxxxxxxxxx RF
  Lipase_GDSL 151 nqrlndlaekdgfavvDlydelqglsgieqlka............................DglHpsekgyeklae 198
                   ++l  +++ ++ av  + d ++ +   +++++                            D+ Hp++kgy+++++
   KOO23468.1 112 YPVLVPMIAAANSAVTGIIDMFIPM--GGEHQWetdpdwpttcakdseypacgfycdaqscDQCHPNDKGYKNMGN 185
                  *********9999999999999999..344444468999***********************************97 PP

>> Adeno_PX  Adenovirus late L2 mu core protein (Protein X)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.0   0.1   6.8e-07    0.0041      16      32 ..     113     129 ..     102     134 .. 0.92

  Alignments for each domain:
  == domain 1  score: 17.0 bits;  conditional E-value: 6.8e-07
    Adeno_PX  16 PaLiPIIAAAIsAaPgI 32 
                 P+L+P+IAAA sA+ gI
  KOO23468.1 113 PVLVPMIAAANSAVTGI 129
                 9*************999 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (194 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       480  (0.0267723); expected 358.6 (0.02)
Passed bias filter:                      333  (0.0185733); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.38u 0.26s 00:00:00.64 Elapsed: 00:00:00.40
# Mc/sec: 1469.30
//
Query:       KOO23469.1  [L=442]
Description: voltage-gated ion channel superfamily [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    7.5e-25   87.6   7.5      1e-24   87.1   7.5    1.1  1  Ion_trans    Ion transport protein
    2.5e-09   37.0   1.7    2.5e-09   37.0   1.7    2.7  3  Ion_trans_2  Ion channel
  ------ inclusion threshold ------
       0.14   12.2   0.0       0.42   10.6   0.0    1.7  1  FliMN_C      Type III flagellar switch regulator (C-ring) Fli


Domain annotation for each model (and alignments):
>> Ion_trans  Ion transport protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   87.1   7.5   1.7e-28     1e-24       2     239 ..      25     306 ..      24     310 .. 0.86

  Alignments for each domain:
  == domain 1  score: 87.1 bits;  conditional E-value: 1.7e-28
                 HHHHHHHHHHHHHHHHHHHCCCSSSSHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHTH............HHHHHHCHSHHHHHHHHHHHHHHHHH..H CS
   Ion_trans   2 svfelfilllillncvflaletyfpedelektileilelvftaiftlemllkilalgl............likkrYlrdpwnilDflvvlpsllsl..v 86 
                 ++++++ ++ ++l++++ ++e  f ed ++ + l+ ++ +++ +f++++++ ++ +++            +i++ Yl++ w+++D+l++lp++++l  +
  KOO23469.1  25 PIWDVVTFFATVLTAIVTPYEVGFVEDAQCVDGLFLFNRIIDLLFMIDIVILFHLQYVdgttgvwvtskrKIAWQYLKT-WFFFDVLSILPIYVVLllD 122
                 68************************99999************************************************.9*************99650 PP

                 HHH................................HHHHHHHHHHHHGGGGGGHHHCHSHHHHH........HHHHHHHHHHHHHHHHHHHHHHHHHHH CS
   Ion_trans  87 lse................................esllllsvlrlfrvlrllklisrleglrt........lvtalirsvkdllnvlllllvvlfifa 145
                   e                                  +  +++lrl++++r+lk+ + + +l t        + +a+++++k ++ ++ ++++ +++++
  KOO23469.1 123 --EnatcypfvhdptrpevgsgpldgsertgmkaaLGVRTIRLLRLVKLARVLKAARVFTSLITdllvkyfeITYAVTEIIKLIFMIISIAHLSACMWS 219
                 ..4445555555666677777888888888998888888899999999999999999999999899999999999************************ PP

                 HHHHHHHTTSCCCCCC.SCCSTSSS..TTTSSSSSS....HHHHHHHHHHHHTTSSHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
   Ion_trans 146 ligvqlfkgklrekne.caktwenp..nngntnFdn....fftallwlfrlmttegwgdilyatldekskvaliyfvifiilgsflllNlliaviadnf 237
                  +   lf   +    + ++ tw+ +  +++   Fd+    ++ al+w++ ++t++g+gdi ++++ e+       ++++++l++    +++i+ ia  +
  KOO23469.1 220 FLP-SLF---I----DdESPTWKRAmrEDKGQDFDSplelYVAALYWATMTLTGIGYGDISAQNTPEQ------AVAVVLMLVTASAWAYVIGTIAGVY 304
                 998.666...1....1222344444223344457778888****************************......9999999999999999999999888 PP

                 HH CS
   Ion_trans 238 qe 239
                 + 
  KOO23469.1 305 ST 306
                 76 PP

>> Ion_trans_2  Ion channel
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.9       1.2   6.9e+03      22      33 ..      29      40 ..      21      48 .. 0.53
   2 ?   -2.3   0.6      0.76   4.5e+03       6      26 ..     206     221 ..     190     226 .. 0.46
   3 !   37.0   1.7   4.2e-13   2.5e-09      25      76 ..     252     303 ..     242     306 .. 0.91

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 1.2
                 ---HHHHHHHHH CS
  Ion_trans_2 22 kwsfldalYfsf 33
                   +f+  +  ++
   KOO23469.1 29 VVTFFATVLTAI 40
                 334444444444 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 0.76
                  TCHHHHHHHHT....T---HH CS
  Ion_trans_2   6 vlifgaviysleegwekwsfl 26 
                  ++i+ a + +   +w   sfl
   KOO23469.1 206 MIISIAHLSA--CMW---SFL 221
                  1111111111..123...555 PP

  == domain 3  score: 37.0 bits;  conditional E-value: 4.2e-13
                  HHHHHHHHHHHHTTS----SSTT.-----HHHHHHHHHHHHHHHHHHHHHHHH CS
  Ion_trans_2  25 fldalYfsfvtltTiGYGdivpe.tdagrlftivyillGlalfalflavlgkv 76 
                  ++ alY++++tlt iGYGdi+++ t+  +++++v++l+  +  a+++ +++ v
   KOO23469.1 252 YVAALYWATMTLTGIGYGDISAQnTPE-QAVAVVLMLVTASAWAYVIGTIAGV 303
                  678********************6666.*******************999865 PP

>> FliMN_C  Type III flagellar switch regulator (C-ring) FliN C-term
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0   7.1e-05      0.42       6      36 ..     402     432 ..     399     438 .. 0.91

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 7.1e-05
                 XXEEEEEEEEEEEEEHHHHHHHHTTSEEE-- CS
     FliMN_C   6 vpveleaelgrtrltlrellnLkvGdvipLd 36 
                 ++++l+a + + r+++++l  Lk+G v++L 
  KOO23469.1 402 MELQLSAFIVHERMPIGQLYVLKQGMVVKLY 432
                 6899************************995 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (442 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       603  (0.0336327); expected 358.6 (0.02)
Passed bias filter:                      339  (0.0189079); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.52u 0.22s 00:00:00.74 Elapsed: 00:00:00.41
# Mc/sec: 3223.60
//
Query:       KOO23470.1  [L=322]
Description: hypothetical protein Ctob_002371 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (322 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       539  (0.030063); expected 358.6 (0.02)
Passed bias filter:                      248  (0.0138323); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.42u 0.24s 00:00:00.65 Elapsed: 00:00:00.39
# Mc/sec: 2498.18
//
Query:       KOO23471.1  [L=206]
Description: auxin efflux carrier family protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.4e-14   52.1   9.7    4.2e-14   51.7   9.7    1.1  1  Mem_trans  Membrane transport protein


Domain annotation for each model (and alignments):
>> Mem_trans  Membrane transport protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.7   9.7   2.4e-18   4.2e-14     235     386 ..      29     196 ..      17     197 .. 0.81

  Alignments for each domain:
  == domain 1  score: 51.7 bits;  conditional E-value: 2.4e-18
   Mem_trans 235 ilimvlrklirnPntyssllglilslvsfkwnvimp.....kiiqksisilgdaglpmalfslGlfLalqpkk.iacgnsvatfa...lavRlilgPlv 324
                 i  m+ ++  +n +  +sl+g+ ++  + +  v+ +     + + +s+++lg +g+p+++f+lG++L+++     ++g   +++    l+++l+l+P++
  KOO23471.1  29 IHGMLAVRNAINRPAAASLMGILVGCTPLRY-VFVEeaapmRWLIDSLELLGTGGIPLIIFVLGATLSKGGGNgGSVGDMPRAAVvatLLAKLVLVPVL 126
                 7789999999***********9988877774.455579999***************************987541456655554446779********** PP

   Mem_trans 325 mlvavlavgLrgslllvaivq.............aAlPqgivlfviAkeynvherelstllifgmlialpitlvy 386
                  + +++a+   g l+                    A+P+++++ +iA+  +++ re++ l++ ++++a+++++++
  KOO23471.1 127 NICLIYACTYAGVLT-----RgidgllpltmvivGASPTAMNISMIATMQGTGHREVAMLMFYQYVLAIVTVSLF 196
                 999999987444333.....22222234444444*************************************9987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (206 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       583  (0.0325172); expected 358.6 (0.02)
Passed bias filter:                      262  (0.0146132); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.20s 00:00:00.57 Elapsed: 00:00:00.35
# Mc/sec: 1771.18
//
Query:       KOO23472.1  [L=317]
Description: calcyphosin-like protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.7e-18   63.3   8.5      1e-05   25.1   0.0    5.5  5  EF-hand_6  EF-hand domain
    6.1e-18   63.0  12.0      1e-06   27.9   0.2    5.5  5  EF-hand_1  EF hand
    5.9e-15   55.5   6.6    5.6e-06   26.7   0.5    4.2  5  EF-hand_7  EF-hand domain pair
    1.1e-11   43.7   9.9    0.00022   20.6   0.2    4.5  5  EF-hand_5  EF hand
    1.4e-08   34.5   8.6    0.00081   19.2   0.5    4.8  5  EF-hand_8  EF-hand domain pair


Domain annotation for each model (and alignments):
>> EF-hand_6  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.7   0.3   1.7e-08     6e-05       2      27 ..       1      26 [.       1      28 [. 0.91
   2 !    6.0   0.0    0.0037        13       4      27 ..      39      64 ..      36      67 .. 0.76
   3 ?    3.4   0.1     0.025        91      14      27 ..      97     110 ..      94     123 .. 0.86
   4 !   25.1   0.0   2.9e-09     1e-05       2      27 ..     178     203 ..     177     212 .. 0.92
   5 !    6.9   0.1    0.0019       6.8       2      27 ..     225     250 ..     224     261 .. 0.88

  Alignments for each domain:
  == domain 1  score: 22.7 bits;  conditional E-value: 1.7e-08
   EF-hand_6  2 lreaFklfDkdgdGkidaeElrkalr 27
                ++++F+ fDk+g+G ++++E++k  r
  KOO23472.1  1 MMSLFRFFDKNGNGLVSFDEFIKTVR 26
                679******************99766 PP

  == domain 2  score: 6.0 bits;  conditional E-value: 0.0037
   EF-hand_6  4 eaFklfDkd..gdGkidaeElrkalr 27
                +aF+ +D    ++G+++ e+++ +++
  KOO23472.1 39 KAFRTLDAAgdNSGSLTVEDIQPFFN 64
                68888886644888******997776 PP

  == domain 3  score: 3.4 bits;  conditional E-value: 0.025
   EF-hand_6  14 dGkidaeElrkalr 27 
                 dG+++ eE+++ + 
  KOO23472.1  97 DGTVTLEEWIDYYE 110
                 9********99887 PP

  == domain 4  score: 25.1 bits;  conditional E-value: 2.9e-09
   EF-hand_6   2 lreaFklfDkdgdGkidaeElrkalr 27 
                 lr aFk+fD dg+G++ + E+r a+ 
  KOO23472.1 178 LRNAFKQFDADGSGEVEFREFRLAME 203
                 899*********************98 PP

  == domain 5  score: 6.9 bits;  conditional E-value: 0.0019
   EF-hand_6   2 lreaFklfDkdgdGkidaeElrkalr 27 
                 lr +F+ + kd + +++++E+ + l 
  KOO23472.1 225 LRGLFERYNKDQSESLSYQEFSDGLF 250
                 5779*****************99876 PP

>> EF-hand_1  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.9   0.4   2.5e-09     9e-06       4      27 ..       3      26 ..       1      28 [. 0.89
   2 ?    1.0   0.0      0.11     4e+02      12      23 ..      49      60 ..      37      65 .. 0.80
   3 ?    3.9   0.0     0.013        47      14      25 ..      97     108 ..      97     112 .. 0.87
   4 !   27.9   0.2   2.8e-10     1e-06       2      28 ..     178     204 ..     177     205 .. 0.94
   5 !    9.4   0.0   0.00023      0.81       3      26 ..     226     249 ..     224     252 .. 0.87

  Alignments for each domain:
  == domain 1  score: 24.9 bits;  conditional E-value: 2.5e-09
                HHHHHHTTTSSSEEEHHHHHHHHH CS
   EF-hand_1  4 eiFrefDkDgdGkIdfeEfkellk 27
                 +Fr fDk+g+G ++f+Ef++ ++
  KOO23472.1  3 SLFRFFDKNGNGLVSFDEFIKTVR 26
                58*****************98765 PP

  == domain 2  score: 1.0 bits;  conditional E-value: 0.11
                TSSSEEEHHHHH CS
   EF-hand_1 12 DgdGkIdfeEfk 23
                D++G ++ e+ +
  KOO23472.1 49 DNSGSLTVEDIQ 60
                899999998875 PP

  == domain 3  score: 3.9 bits;  conditional E-value: 0.013
                 SSEEEHHHHHHH CS
   EF-hand_1  14 dGkIdfeEfkel 25 
                 dG++++eE++++
  KOO23472.1  97 DGTVTLEEWIDY 108
                 9********986 PP

  == domain 4  score: 27.9 bits;  conditional E-value: 2.8e-10
                 HHHHHHHHTTTSSSEEEHHHHHHHHHH CS
   EF-hand_1   2 lkeiFrefDkDgdGkIdfeEfkellkk 28 
                 l+++F+ fD Dg+G ++f Ef+ ++++
  KOO23472.1 178 LRNAFKQFDADGSGEVEFREFRLAMER 204
                 799**********************87 PP

  == domain 5  score: 9.4 bits;  conditional E-value: 0.00023
                 HHHHHHHTTTSSSEEEHHHHHHHH CS
   EF-hand_1   3 keiFrefDkDgdGkIdfeEfkell 26 
                 + +F+ + kD++  ++++Ef + l
  KOO23472.1 226 RGLFERYNKDQSESLSYQEFSDGL 249
                 668*****************9876 PP

>> EF-hand_7  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.2   0.2   7.4e-07    0.0026      49      69 ..       4      24 ..       1      26 [. 0.89
   2 !   10.5   0.0   0.00018      0.65       7      70 ..      40     109 ..      36     120 .. 0.72
   3 !   19.3   0.1   3.3e-07    0.0012      19      70 ..     149     202 ..     146     203 .. 0.79
   4 !   26.7   0.5   1.5e-09   5.6e-06       2      67 ..     176     246 ..     175     250 .. 0.82
   5 !    7.7   0.1    0.0014       4.9       2      29 ..     223     251 ..     222     266 .. 0.70

  Alignments for each domain:
  == domain 1  score: 18.2 bits;  conditional E-value: 7.4e-07
   EF-hand_7 49 lfkefDtdkdGvisfdEFlkl 69
                lf+ fD++++G +sfdEF k 
  KOO23472.1  4 LFRFFDKNGNGLVSFDEFIKT 24
                899***************986 PP

  == domain 2  score: 10.5 bits;  conditional E-value: 0.00018
   EF-hand_7   7 aFkelDt..dgdgyldkeellrllrkifqga..gegsklsdeelellfkef...DtdkdGvisfdEFlkly 70 
                 aF+ lD   d++g+l++e+++ ++ +  q     eg k+  e l++++  f     + dG+++++E   +y
  KOO23472.1  40 AFRTLDAagDNSGSLTVEDIQPFFNA-GQDPrvKEGTKTEAEVLKEFIAGFegkGGNFDGTVTLEEWIDYY 109
                 6888886448889********99885.33335666666444445566555587777778899998876666 PP

  == domain 3  score: 19.3 bits;  conditional E-value: 3.3e-07
   EF-hand_7  19 ldkeellr....llrkifqgagegsklsdeelellfkefDtdkdGvisfdEFlkly 70 
                 +++ ++      l+++i+q+ + g+++ + +l+  fk fD d++G++ f EF+ ++
  KOO23472.1 149 VSEGDMNMlediLVKNIYQK-SQGVNVER-ALRNAFKQFDADGSGEVEFREFRLAM 202
                 55555443344567888888.99999777.9*********************9777 PP

  == domain 4  score: 26.7 bits;  conditional E-value: 1.5e-09
   EF-hand_7   2 eklkeaFkelDtdgdgyldkeellrllrkifqga....gegsklsd.......eelellfkefDtdkdGvisfdEFl 67 
                  +l+ aFk++D dg+g ++ +e++ +++++        +      +       e l+ lf+  ++d++ ++s++EF 
  KOO23472.1 176 RALRNAFKQFDADGSGEVEFREFRLAMERFGLTMaspdS------RskggvpyEVLRGLFERYNKDQSESLSYQEFS 246
                 5799********************9***99864454441......1334444466*********************6 PP

  == domain 5  score: 7.7 bits;  conditional E-value: 0.0014
   EF-hand_7   2 eklkeaFkelDtdgdgyldkeellr.llr 29 
                 e+l+  F+ + +d++ +l+++e+ + l++
  KOO23472.1 223 EVLRGLFERYNKDQSESLSYQEFSDgLFK 251
                 56777888888888888888887765444 PP

>> EF-hand_5  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.6   0.2     6e-08   0.00022       4      22 ..       4      22 ..       1      25 [. 0.88
   2 ?   -0.1   0.1       0.2   7.3e+02       4      19 ..      40      57 ..      37      60 .. 0.58
   3 !    5.6   0.0    0.0033        12      11      21 ..      95     105 ..      94     109 .. 0.92
   4 !   20.5   0.2   6.3e-08   0.00022       2      22 ..     179     199 ..     178     202 .. 0.88
   5 ?   -4.2   0.0       4.2   1.5e+04      16      22 ..     240     246 ..     240     247 .. 0.77

  Alignments for each domain:
  == domain 1  score: 20.6 bits;  conditional E-value: 6e-08
                HHHHH-SS-SSCE-HHHHH CS
   EF-hand_5  4 tFqaiDlNgDGkIskeELk 22
                +F+ +D+Ng G +s++E+ 
  KOO23472.1  4 LFRFFDKNGNGLVSFDEFI 22
                7*****************4 PP

  == domain 2  score: -0.1 bits;  conditional E-value: 0.2
                HHHHH-S..S-SSCE-HH CS
   EF-hand_5  4 tFqaiDl..NgDGkIske 19
                +F+ +D+  +++G +++e
  KOO23472.1 40 AFRTLDAagDNSGSLTVE 57
                577777622566666655 PP

  == domain 3  score: 5.6 bits;  conditional E-value: 0.0033
                 S-SSCE-HHHH CS
   EF-hand_5  11 NgDGkIskeEL 21 
                 N DG+++ eE+
  KOO23472.1  95 NFDGTVTLEEW 105
                 89********9 PP

  == domain 4  score: 20.5 bits;  conditional E-value: 6.3e-08
                 HHHHHHH-SS-SSCE-HHHHH CS
   EF-hand_5   2 kdtFqaiDlNgDGkIskeELk 22 
                 + +F+++D++g+G + + E++
  KOO23472.1 179 RNAFKQFDADGSGEVEFREFR 199
                 556*****************8 PP

  == domain 5  score: -4.2 bits;  conditional E-value: 4.2
                 E-HHHHH CS
   EF-hand_5  16 IskeELk 22 
                 +s +E+ 
  KOO23472.1 240 LSYQEFS 246
                 5889995 PP

>> EF-hand_8  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.2   0.5   2.3e-07   0.00081      30      50 ..       3      23 ..       1      26 [. 0.92
   2 ?   -1.0   0.0      0.45   1.6e+03      39      47 ..      50      58 ..      41      80 .. 0.72
   3 ?    0.2   0.1      0.19   6.9e+02      40      53 ..      97     110 ..      95     111 .. 0.88
   4 !   13.5   0.1   1.3e-05     0.047      22      53 ..     171     203 ..     154     205 .. 0.77
   5 !    4.5   0.0     0.009        32       9      54 ..     197     251 ..     197     252 .. 0.78

  Alignments for each domain:
  == domain 1  score: 19.2 bits;  conditional E-value: 2.3e-07
   EF-hand_8 30 ilfrefDtdgdGkisfeEFcv 50
                +lfr fD +g+G +sf+EF+ 
  KOO23472.1  3 SLFRFFDKNGNGLVSFDEFIK 23
                79*****************85 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 0.45
   EF-hand_8 39 gdGkisfeE 47
                ++G ++ e+
  KOO23472.1 50 NSGSLTVED 58
                444444444 PP

  == domain 3  score: 0.2 bits;  conditional E-value: 0.19
   EF-hand_8  40 dGkisfeEFcvlle 53 
                 dG++++eE ++++e
  KOO23472.1  97 DGTVTLEEWIDYYE 110
                 9*******999987 PP

  == domain 4  score: 13.5 bits;  conditional E-value: 1.3e-05
   EF-hand_8  22 glseee.vdilfrefDtdgdGkisfeEFcvlle 53 
                 g++ e  ++  f+ fD dg+G + f EF   +e
  KOO23472.1 171 GVNVERaLRNAFKQFDADGSGEVEFREFRLAME 203
                 67777668999*****************87776 PP

  == domain 5  score: 4.5 bits;  conditional E-value: 0.009
   EF-hand_8   9 elrrilrilglkk.........glseeevdilfrefDtdgdGkisfeEFcvller 54 
                 e+r ++  +gl +         g+  e ++ lf +   d++  +s+ EF + l++
  KOO23472.1 197 EFRLAMERFGLTMaspdsrskgGVPYEVLRGLFERYNKDQSESLSYQEFSDGLFK 251
                 6788884448888888888884444444999999999************998886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (317 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       505  (0.0281667); expected 358.6 (0.02)
Passed bias filter:                      460  (0.0256568); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.48u 0.25s 00:00:00.73 Elapsed: 00:00:00.41
# Mc/sec: 2314.73
//
Query:       KOO23473.1  [L=507]
Description: protein lin-54-like protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    7.6e-22   77.3  51.4    8.5e-11   42.0  26.4    2.4  2  TCR       Tesmin/TSO1-like CXC domain, cysteine-rich domain
  ------ inclusion threshold ------
        2.2    8.5  47.4        7.7    6.7  18.6    3.0  2  MSL2-CXC  CXC domain of E3 ubiquitin-protein ligase MSL2


Domain annotation for each model (and alignments):
>> TCR  Tesmin/TSO1-like CXC domain, cysteine-rich domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.1  17.1   1.8e-14   1.6e-10       2      37 ..      91     127 ..      90     128 .. 0.95
   2 !   42.0  26.4   9.4e-15   8.5e-11       2      36 ..     168     202 ..     167     204 .. 0.96

  Alignments for each domain:
  == domain 1  score: 41.1 bits;  conditional E-value: 1.8e-14
         TCR   2 kgCnCkkskClklYCeCfaagklCs.skCkCeeCkNk 37 
                 k+C+C +s+Clk+YC Cfa+g+ C   +CkC++C+N 
  KOO23473.1  91 KRCRCDRSGCLKRYCVCFAQGSVCVdGECKCKGCEND 127
                 78**********************9999********6 PP

  == domain 2  score: 42.0 bits;  conditional E-value: 9.4e-15
         TCR   2 kgCnCkkskClklYCeCfaagklCsskCkCeeCkN 36 
                 +gCnCkks+C+++YCeCf+ag++C++kC+C eCkN
  KOO23473.1 168 TGCNCKKSGCQRRYCECFQAGVKCTEKCRCCECKN 202
                 58********************************9 PP

>> MSL2-CXC  CXC domain of E3 ubiquitin-protein ligase MSL2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.7  18.6   0.00086       7.7       7      49 ..      92     129 ..      78     134 .. 0.82
   2 ?    5.9  20.9    0.0015        14      17      49 ..     172     205 ..     167     209 .. 0.85

  Alignments for each domain:
  == domain 1  score: 6.7 bits;  conditional E-value: 0.00086
    MSL2-CXC   7 kCrCGtstekkkkltCrnqRCpCYvngksCtd..CkCrgCkNphk 49 
                  CrC        +  C +  C C+ +g  C+d  CkC+gC+N   
  KOO23473.1  92 RCRCD-------RSGCLKRYCVCFAQGSVCVDgeCKCKGCENDDT 129
                 45554.......34699999**********9777********765 PP

  == domain 2  score: 5.9 bits;  conditional E-value: 0.0015
    MSL2-CXC  17 kkkltCrnqRCpCYvngksCtd.CkCrgCkNphk 49 
                  kk  C++  C C+++g  Ct+ C+C  CkNp  
  KOO23473.1 172 CKKSGCQRRYCECFQAGVKCTEkCRCCECKNPAG 205
                 46889***************855*********75 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (507 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       955  (0.0532657); expected 358.6 (0.02)
Passed bias filter:                      306  (0.0170673); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.52u 0.26s 00:00:00.78 Elapsed: 00:00:00.41
# Mc/sec: 3755.90
//
Query:       KOO23474.1  [L=507]
Description: hypothetical protein Ctob_002381 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
  ------ inclusion threshold ------
      0.014   15.5   2.3      0.028   14.5   2.3    1.4  1  TolA_bind_tri  TolA binding protein trimerisation


Domain annotation for each model (and alignments):
>> TolA_bind_tri  TolA binding protein trimerisation
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.5   2.3   1.6e-06     0.028      12      52 ..      40      80 ..      37      97 .. 0.89

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 1.6e-06
  TolA_bind_tri 12 ilearsqlllelqqqlealqqelreLRGqiEelqyqleqle 52
                    lea++ +lle+ q+ ea ++e + LR ++E+l+ ql+q++
     KOO23474.1 40 VLEAQNIMLLEQTQRAEAAENESAALRLEVEQLTEQLQQAI 80
                   578999********************************974 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (507 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1182  (0.0659267); expected 358.6 (0.02)
Passed bias filter:                      495  (0.0276089); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.58u 0.26s 00:00:00.84 Elapsed: 00:00:00.42
# Mc/sec: 3594.15
//
Query:       KOO23475.1  [L=339]
Description: hypothetical protein Ctob_002380 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
     0.0012   19.8   0.0     0.0041   18.1   0.0    1.9  2  Methyltransf_24  Methyltransferase domain


Domain annotation for each model (and alignments):
>> Methyltransf_24  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.0      0.99   1.8e+04      42      47 ..      28      33 ..       8      50 .. 0.49
   2 !   18.1   0.0   2.3e-07    0.0041       1     101 [.     112     257 ..     112     259 .. 0.73

  Alignments for each domain:
  == domain 1  score: -3.2 bits;  conditional E-value: 0.99
  Methyltransf_24 42 areagl 47
                     ar++ l
       KOO23475.1 28 ARSERL 33
                     222222 PP

  == domain 2  score: 18.1 bits;  conditional E-value: 2.3e-07
  Methyltransf_24   1 vEiGvysGvstlwllralrrnga......grlvavdhdpg..................aeeaaalare....aglddrvrlikads........ 58 
                      vE G++ G  t++l++a+ ++++      ++++a+d +                    a ++aa  +      +++  v++ + d+        
       KOO23475.1 112 VEYGSFMGEATQALAQAVADAQTtwgtlpTKVLAIDSFDSttgyqgvfmnpwtwvappAVRVAAASAPphptPYYQFLVNMGVTDAtkervvpf 205
                      89***********************************888788988888888877765333333333233433333334444444455555555 PP

  Methyltransf_24  59 ....eealasla.......agsiDllfiDgghaaeavledleallprlapggvv 101
                          ++al++ +       a +  l+++   +++++ ++dl++l+++la gg++
       KOO23475.1 206 pllaPDALTRARllgtanpAARPRLIYVN--PVGASLKHDLPVLWRLLACGGTM 257
                      66666666655566777676677899998..89*****************9987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (339 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       389  (0.0216967); expected 358.6 (0.02)
Passed bias filter:                      341  (0.0190195); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.22s 00:00:00.67 Elapsed: 00:00:00.38
# Mc/sec: 2641.86
//
Query:       KOO23476.1  [L=900]
Description: mical-like protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    4.9e-06   26.0   0.0    8.8e-05   21.9   0.0    2.5  2  Pyr_redox_2    Pyridine nucleotide-disulphide oxidoreductase
     0.0013   19.2   0.0     0.0046   17.5   0.0    2.0  1  Pyr_redox      Pyridine nucleotide-disulphide oxidoreductase
     0.0017   17.1   0.1     0.0032   16.3   0.1    1.4  1  HI0933_like    HI0933-like protein
     0.0029   17.8   0.0     0.0067   16.6   0.0    1.7  1  NAD_binding_8  NAD(P)-binding Rossmann-like domain
     0.0098   15.2   0.6      0.016   14.5   0.1    1.6  2  Pyr_redox_3    Pyridine nucleotide-disulphide oxidoreductase
  ------ inclusion threshold ------
      0.011   15.0   0.9      0.081   12.2   0.5    2.5  3  AlaDh_PNT_C    Alanine dehydrogenase/PNT, C-terminal domain
      0.022   14.0   1.5       0.27   10.4   0.2    2.8  2  FAD_binding_3  FAD binding domain
      0.029   14.0   1.5       0.54    9.8   0.1    2.8  2  DAO            FAD dependent oxidoreductase
      0.056   12.5   2.2      0.096   11.7   0.1    2.4  3  FAD_binding_2  FAD binding domain
        2.3    7.5   6.9        3.4    6.9   0.0    3.0  3  FAD_oxidored   FAD dependent oxidoreductase


Domain annotation for each model (and alignments):
>> Pyr_redox_2  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.9   0.0   4.9e-08   8.8e-05     128     198 ..     484     554 ..     467     557 .. 0.85
   2 ?    0.9   0.0      0.12   2.1e+02      84     125 ..     668     708 ..     635     737 .. 0.78

  Alignments for each domain:
  == domain 1  score: 21.9 bits;  conditional E-value: 4.9e-08
                  SECHHHHHHCCSS-TSEEEEES-SHHHHHHHHHHHHHT-EEEEEESSSSSSTTS-HHHHHHHHHHHHHTTE CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2 128 rtldsaealklkllpkrivvvGgGyiGvElAaalaklgkevtlveardrllraldkelsaaleealekeGv 198
                  ++ + a a+     p +++v GgG+iG+ +A++la lg+ v  +e+r+++ r     l +++++ l + G+
   KOO23476.1 484 EYATAAGAVAAGSAPLKAMVLGGGPIGLRCAIELAMLGHSVLALEQRTEFGRLNILHLWDWVANDLAELGI 554
                  5567788888888999*********************************9987777788888888888877 PP

  == domain 2  score: 0.9 bits;  conditional E-value: 0.12
                  EEEETEEECTCEEEEEESEEEE---EEE-BCTCTTC.TTBEE CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2  84 kvklekkkegdeekiaydklvlAtGssprdlgipGvaenvgk 125
                  +++++++++++   + +d lv AtG++  ++ + G  e+v+ 
   KOO23476.1 668 TLQVQQRRRSEDAVFNADVLVDATGARCELFRTIGF-EQVTA 708
                  66777777788899999*********9999977777.44332 PP

>> Pyr_redox  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5   0.0   2.6e-06    0.0046       2      55 ..     501     554 ..     500     558 .. 0.87

  Alignments for each domain:
  == domain 1  score: 17.5 bits;  conditional E-value: 2.6e-06
                 EEEECSSHHHHHHHHHHHHTTSEEEEEESSSSSSTTSSHHHHHHHHHHHHHTTE CS
   Pyr_redox   2 vvvvGgGyiglElAgalaelgkkVtvversdkllrllDeeaskilqeklekngi 55 
                 ++v+GgG igl +A +la lg++V  +e + ++ rl    + +++++ l ++gi
  KOO23476.1 501 AMVLGGGPIGLRCAIELAMLGHSVLALEQRTEFGRLNILHLWDWVANDLAELGI 554
                 78*****************************99987777777777777777777 PP

>> HI0933_like  HI0933-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.1   1.8e-06    0.0032       2      37 ..     500     535 ..     499     538 .. 0.95

  Alignments for each domain:
  == domain 1  score: 16.3 bits;  conditional E-value: 1.8e-06
                  SEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSS-H CS
  HI0933_like   2 dviviGgGaAGlmaAisaakrgkrVlllekakklgr 37 
                  + +v+GgG+ Gl +Ai++a  g++Vl le+ +++gr
   KOO23476.1 500 KAMVLGGGPIGLRCAIELAMLGHSVLALEQRTEFGR 535
                  578*****************************9997 PP

>> NAD_binding_8  NAD(P)-binding Rossmann-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   0.0   3.8e-06    0.0067       1      32 [.     503     534 ..     503     566 .. 0.95

  Alignments for each domain:
  == domain 1  score: 16.6 bits;  conditional E-value: 3.8e-06
                    EE--SHHHHHHHHHHHCCTEEEEEE-SSSSSS CS
  NAD_binding_8   1 IvGaGlsGlvaAylLakagfdvlllekrdrlG 32 
                    ++G+G  Gl +A +La  g++vl le+r+ +G
     KOO23476.1 503 VLGGGPIGLRCAIELAMLGHSVLALEQRTEFG 534
                    89**************************9998 PP

>> Pyr_redox_3  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.5   0.1   8.9e-06     0.016       2      30 ..     503     530 ..     502     536 .. 0.89
   2 ?   -3.3   0.0       2.3     4e+03     185     225 ..     713     755 ..     707     782 .. 0.65

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 8.9e-06
  Pyr_redox_3   2 IiGaGPaGlaaaielkkagledylilEkg 30 
                  + G+GP+Gl +aiel  +g  ++l lE+ 
   KOO23476.1 503 VLGGGPIGLRCAIELAMLGH-SVLALEQR 530
                  78*****************9.79999975 PP

  == domain 2  score: -3.3 bits;  conditional E-value: 2.3
  Pyr_redox_3 185 rk.gaeVtvvtrgseiekeesdpsyslkpdienrleelvke..e 225
                  r+ g  V+   r+++ e+   + + + + + + r+e+l ++  +
   KOO23476.1 713 RAlGVVVHFHNRKTPTENA-LEEKNWAQQYHKARFEQLKERgvQ 755
                  5447778888888776665.577888889999999888766432 PP

>> AlaDh_PNT_C  Alanine dehydrogenase/PNT, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.5   4.5e-05     0.081      13      62 ..     482     532 ..     474     536 .. 0.84
   2 ?   -2.3   0.0       1.2   2.2e+03      48      96 ..     590     688 ..     586     691 .. 0.71
   3 ?   -1.0   0.0      0.49   8.8e+02      42      70 ..     707     737 ..     702     765 .. 0.77

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 4.5e-05
                  CTSEEETTCEET.CB---EEEEESTSHHHHHHHHHHHHTT-EEEEEESSHH CS
  AlaDh_PNT_C  13 fggkgtlaGgvp.gvepakvlviGgGvaGlqAiatakglgakVtvlDvrpa 62 
                  +g   t+aG v  g +p k +v+GgG  Gl  +   + lg +V +l+ r++
   KOO23476.1 482 QGEYATAAGAVAaGSAPLKAMVLGGGPIGLRCAIELAMLGHSVLALEQRTE 532
                  55567899998647899**************999999*********99876 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 1.2
                  HHTT-EEEE.EESSHHHHHHHHHTTTCECEE.................................................HCHHHHHHHHHHHH-SEE CS
  AlaDh_PNT_C  48 kglgakVtv.lDvrparleqleslgakfvev.................................................lksqeellaeavkeadvv 95 
                  ++lga+V+   D+r+   +q ++  ++ +e                                                  + +q++  ++av +adv+
   KOO23476.1 590 VRLGANVRTlADLRAVEPHQARTTSRRSLEWpadvrlsldnapgvppllpfgassdavegladgvrgmhlsvdgrplptlQVQQRRRSEDAVFNADVL 687
                  67888885415788777777777777767777777777777777777777777777777777777777777777777777777888888888888888 PP

                  E CS
  AlaDh_PNT_C  96 i 96 
                  +
   KOO23476.1 688 V 688
                  7 PP

  == domain 3  score: -1.0 bits;  conditional E-value: 0.49
                  HHHHHHHHTT-EEEEEESSHHHHHHHHH..T CS
  AlaDh_PNT_C  42 qAiatakglgakVtvlDvrparleqles..l 70 
                   A++ a++lg +V  ++ ++ + + le+  +
   KOO23476.1 707 TALKSARALGVVVHFHNRKTPTENALEEknW 737
                  7999*************99999999998543 PP

>> FAD_binding_3  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.2   0.00015      0.27       4      35 ..     501     532 ..     499     537 .. 0.91
   2 ?    0.6   0.1      0.15   2.7e+02     141     195 ..     670     723 ..     666     757 .. 0.67

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00015
                    EEEE--SHHHHHHHHHHHHTTHHEEEEESSSS CS
  FAD_binding_3   4 VlIVGaGpaGlmlallLseaGvrvvlvekrst 35 
                     ++ G+Gp Gl  a +L++ G +v+ +e+r++
     KOO23476.1 501 AMVLGGGPIGLRCAIELAMLGHSVLALEQRTE 532
                    6799************************9976 PP

  == domain 2  score: 0.6 bits;  conditional E-value: 0.15
                    EEEECCTTEEEEEEEEEEEE--GTT-HHHHHHTGGEEEEEEEEEEEEEEEEEEC.- CS
  FAD_binding_3 141 evrdketgeeetvrakYlvGaDGgrStvrktlgiefegeetvyeagvldvlfda.d 195
                    +v++++  e+  ++a+ lv a G+r    +t+g+e  +  ++  a+ l+v++   +
     KOO23476.1 670 QVQQRRRSEDAVFNADVLVDATGARCELFRTIGFEQVTALKS--ARALGVVVHFhN 723
                    567788888888999999999999999999999985555555..455555444322 PP

>> DAO  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   0.1    0.0003      0.54       3      33 ..     502     534 ..     500     536 .. 0.90
   2 ?    2.2   0.1     0.059   1.1e+02     144     186 ..     571     613 ..     540     730 .. 0.77

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.0003
                 EEECTSHHHHHHHHHHHHTT..EEEEESSSSTT CS
         DAO   3 viiGGGiiGlstAyeLarrg..Vtllekgdiag 33 
                  + GGG iGl +A eLa  g  V+ le++ ++g
  KOO23476.1 502 MVLGGGPIGLRCAIELAMLGhsVLALEQRTEFG 534
                 599*************988889******98877 PP

  == domain 2  score: 2.2 bits;  conditional E-value: 0.059
                 EHHHHHHHHHHHHHHTT-EEEESECEEEEEEEETCEEEEE....EEC CS
         DAO 144 dpakltaalaraaealGveilegtevtgleeedgkvwgve....rtt 186
                  + +l ++l++ a   Gv++++g++v+ l +    +  ve    rtt
  KOO23476.1 571 GTSQLQHSLLKIALLVGVQVRLGANVRTLAD----LRAVEphqaRTT 613
                 4577889999999999**********99943....666655444333 PP

>> FAD_binding_2  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.1      0.42   7.5e+02      46      57 ..     118     129 ..      86     271 .. 0.59
   2 ?   11.7   0.1   5.4e-05     0.096       3      35 ..     502     534 ..     500     538 .. 0.92
   3 ?   -3.2   0.0       1.9   3.4e+03     174     214 ..     666     701 ..     654     717 .. 0.69

  Alignments for each domain:
  == domain 1  score: -1.1 bits;  conditional E-value: 0.42
                    E-TT..SSGGST CS
  FAD_binding_2  46 davlspeqkkag 57 
                    + +l+++++++ 
     KOO23476.1 118 QTALEQTAAEQS 129
                    223322222222 PP

  == domain 2  score: 11.7 bits;  conditional E-value: 5.4e-05
                    EEE--SHHHHHHHHHHHHTTT-EEEEESSSGGG CS
  FAD_binding_2   3 iViGsGlAGLaAAleaaeaGlkvavvekeqefg 35 
                     V G+G  GL++A+e+a  G++v+ +e+  efg
     KOO23476.1 502 MVLGGGPIGLRCAIELAMLGHSVLALEQRTEFG 534
                    599*************************98876 PP

  == domain 3  score: -3.2 bits;  conditional E-value: 1.9
                    EEEEEEEETTTTCEEEEEESEEEE-----GG.......... CS
  FAD_binding_2 174 vtGavvenpesgrevrirakavvlatgGfgrallkellgaa 214
                      +  v++++ +++  ++a+ +v+atg+    l+    +++
     KOO23476.1 666 LPTLQVQQRRRSEDAVFNADVLVDATGARCE-LF----RTI 701
                    5566788888888889999999999999884.33....334 PP

>> FAD_oxidored  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.6       1.6   2.9e+03     186     282 ..      50     143 ..      18     178 .. 0.47
   2 ?    6.9   0.0    0.0019       3.4       3      35 ..     502     534 ..     501     554 .. 0.94
   3 ?    3.4   0.2     0.022        40     123     164 ..     669     713 ..     651     840 .. 0.60

  Alignments for each domain:
  == domain 1  score: -2.8 bits;  conditional E-value: 1.6
  FAD_oxidored 186 edekvqaynkrlcltskp.enrvpfe..kkpegydparyel.arvfeaklskgklpgektdvnwprvstdlienldlpeaeyegreqireeareltq 278
                   ++++ qa  ++ ++t+ + ++++++   +k+e+ d +++e   r  +a  ++   p +  d+++++    +   l+ + ae+++ + +     e +q
    KOO23476.1  50 ATPFKQATRSAAAATPVElATPIRTRarAKKEANDSENTEPsNREADA-PTPAAPPACAGDIHAEQ--AAAQTALEQTAAEQSAEQSAE----EALQ 139
                   444444444444444444444444432222222222222222222333.33333444433344432..111111223333333333333....3333 PP

  FAD_oxidored 279 gllk 282
                   ++l+
    KOO23476.1 140 SYLR 143
                   3333 PP

  == domain 2  score: 6.9 bits;  conditional E-value: 0.0019
  FAD_oxidored   3 vVvGGgpaGvaAAiaAaraGakvlLveergvlG 35 
                   +V GGgp G+ +Ai  a  G +vl +e+r   G
    KOO23476.1 502 MVLGGGPIGLRCAIELAMLGHSVLALEQRTEFG 534
                   69*************************998877 PP

  == domain 3  score: 3.4 bits;  conditional E-value: 0.022
  FAD_oxidored 123 vtveske.g.rktirAkvfiDATg.dGdlaalaGvpyrvGresre 164
                   ++v++++   + +++A+v +DATg  ++l  + G + ++  +s  
    KOO23476.1 669 LQVQQRRrSeDAVFNADVLVDATGaRCELFRTIGFEQVTALKSAR 713
                   44544444449************9347777777777666666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (900 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       985  (0.0549389); expected 358.6 (0.02)
Passed bias filter:                      461  (0.0257125); expected 358.6 (0.02)
Passed Vit filter:                        55  (0.00306766); expected 17.9 (0.001)
Passed Fwd filter:                        14  (0.000780858); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.81u 0.31s 00:00:01.12 Elapsed: 00:00:00.46
# Mc/sec: 5864.91
//
Query:       KOO23477.1  [L=434]
Description: u6 snRNA-associated sm-like protein lsm4 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.5e-15   55.9   0.0    3.8e-15   55.3   0.0    1.3  1  LSM              LSM domain
  ------ inclusion threshold ------
      0.026   14.7   0.0      0.053   13.7   0.0    1.4  1  SM-ATX           Ataxin 2 SM domain
      0.075   13.0   0.1       0.18   11.7   0.1    1.6  1  Erythro-docking  Erythronolide synthase, docking


Domain annotation for each model (and alignments):
>> LSM  LSM domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.3   0.0   6.4e-19   3.8e-15       2      65 ..       6      69 ..       5      71 .. 0.95

  Alignments for each domain:
  == domain 1  score: 55.3 bits;  conditional E-value: 6.4e-19
                HHHHTTTSEEEEEETTSEEEEEEEEEEETTSEEEEEEEEEEETTETEEEEEEEEEEEGGGEEEE CS
         LSM  2 flkklinkkvtvelkngrelrGtLkgfDqfmNlvLedveetlkdkkekrklglvliRGnnivli 65
                +l+   ++ ++velkng+++ G L+++D++mN+ L+ v+ t++d+++  kl +v iRGnni ++
  KOO23477.1  6 LLRTAAGHPMLVELKNGETYNGELVACDNWMNISLRGVICTSRDGDRFWKLAEVTIRGNNIKYL 69
                6888999******************************************************997 PP

>> SM-ATX  Ataxin 2 SM domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.0   8.8e-06     0.053       7      49 ..       6      46 ..       4      71 .. 0.87

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 8.8e-06
                HHHTTTTSEEEEEETTS-EEEEEEEEE-T..T--EEEEEEEET CS
      SM-ATX  7 lltslvGkevevtvknGevyeGifstvslekdfsvvLkmarkv 49
                ll +  G++  v++knGe+y G + +++    ++++L+ +  +
  KOO23477.1  6 LLRTAAGHPMLVELKNGETYNGELVACDN--WMNISLRGVICT 46
                788899*********************99..899988876555 PP

>> Erythro-docking  Erythronolide synthase, docking
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.1     3e-05      0.18      24      53 ..     230     259 ..     219     262 .. 0.82

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 3e-05
                      TSS-THHHHHHHHHHHHHHHHHHH-S--S- CS
  Erythro-docking  24 dedGhdDvGaRLeaLLRRWnsRRadetetv 53 
                      + d    v  RLe L RR++  R + te+ 
       KOO23477.1 230 ASDADVQVAGRLEELARRFQQQRQERTEPC 259
                      4455556889*****************985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (434 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       425  (0.0237046); expected 358.6 (0.02)
Passed bias filter:                      333  (0.0185733); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.51u 0.25s 00:00:00.76 Elapsed: 00:00:00.43
# Mc/sec: 3051.49
//
Query:       KOO23478.1  [L=210]
Description: hypothetical protein Ctob_002366 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00059   19.7   0.0     0.0011   18.8   0.0    1.5  1  PTCB-BRCT  twin BRCT domain


Domain annotation for each model (and alignments):
>> PTCB-BRCT  twin BRCT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.8   0.0   6.2e-08    0.0011       3      61 ..      84     145 ..      82     146 .. 0.81

  Alignments for each domain:
  == domain 1  score: 18.8 bits;  conditional E-value: 6.2e-08
                 EEEECB-TTCHHHHHHHHHHTT-EEESSEETT-SEEEE...CSS-CHHHHHHHHCT-EEE-C CS
   PTCB-BRCT   3 icvtgysgddrkslqklieamGaeyskdltksvTHLic...ksgeGekyekAkkwgipvVsv 61 
                 +c tgy    +    + + a+G+  s + t ++T Li+   +     ky +A+++g+pvV++
  KOO23478.1  84 VCSTGYGARPSAPQLEALAALGGRLSNRDTAQMTVLIVapfNVKGHLKYVRAQERGLPVVTL 145
                 67777777775555556789******************665555667*************85 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (210 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       522  (0.0291148); expected 358.6 (0.02)
Passed bias filter:                      377  (0.0210274); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.25s 00:00:00.65 Elapsed: 00:00:00.40
# Mc/sec: 1570.59
//
Query:       KOO23479.1  [L=355]
Description: serine protease [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.6e-32  113.5   0.8    3.1e-32  112.5   0.8    1.5  1  Trypsin_2      Trypsin-like peptidase domain
    6.8e-18   65.3   0.1    1.1e-17   64.6   0.1    1.3  1  Trypsin        Trypsin
    3.7e-13   49.6   0.1    4.2e-12   46.2   0.0    2.5  2  PDZ_2          PDZ domain
    1.9e-07   30.8   0.8    1.8e-05   24.5   0.1    2.6  2  PDZ_6          PDZ domain
    7.6e-06   24.9   0.8      0.011   14.5   0.2    2.1  2  Peptidase_S46  Peptidase S46
     0.0011   18.6   0.0     0.0022   17.6   0.0    1.4  1  LSM            LSM domain
     0.0028   18.0   0.1       0.22   11.9   0.0    2.7  2  PDZ            PDZ domain
  ------ inclusion threshold ------
      0.015   14.5   1.3       0.69    9.1   0.0    2.2  2  Peptidase_S32  Equine arteritis virus serine endopeptidase S3
      0.025   14.2   0.0      0.051   13.2   0.0    1.4  1  Hfq            Hfq protein
       0.15   11.8   0.0       0.32   10.7   0.0    1.5  1  Peptidase_S29  Hepatitis C virus NS3 protease


Domain annotation for each model (and alignments):
>> Trypsin_2  Trypsin-like peptidase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  112.5   0.8   1.7e-35   3.1e-32       1     150 []      64     203 ..      64     203 .. 0.96

  Alignments for each domain:
  == domain 1  score: 112.5 bits;  conditional E-value: 1.7e-35
   Trypsin_2   1 GsGflvgsdglilTnaHvvdsadgaavkaikkkveeagadgrevpakvvaadpel.DlAllkvssderaglpplplgpsealkggepvyvvGyplggek 98 
                 GsG++v+++g ilTnaHvv++a++++v         + +dgr+++++v + d ++ DlA +k+ + ++++lp++plg s++l++g+ v+++G+  g ++
  KOO23479.1  64 GSGVIVNEEGFILTNAHVVKNAAKVTV---------TLTDGRVFEGQVKGQD-DYmDLAAVKI-KPTGRKLPTAPLGRSDDLQVGDWVIAIGNAVGLDS 151
                 9**************************.........****************.888*******.*****************************777776 PP

   Trypsin_2  99 sgsvssGivsgvve..sesaasgegesflqtdaatspGsSGGplfdsdGrvvGl 150
                   +v+ Givs++++   e   ++++ +f+qtdaa++pG+SGGpl+++ G+v+G+
  KOO23479.1 152 --TVTLGIVSSLQRsaAEVGIPNKKVNFIQTDAAINPGNSGGPLLNEFGEVIGI 203
                 ..************988889999999999************************8 PP

>> Trypsin  Trypsin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.6   0.1     6e-21   1.1e-17      27     217 ..      64     223 ..      56     227 .. 0.78

  Alignments for each domain:
  == domain 1  score: 64.6 bits;  conditional E-value: 6e-21
                 EEEEEEETT.EEEEEGGGTTTGGGEEEEESESBTTSCTTTEEEEEEEEEEEETTEBTTTTTTTEEEEEESSSSTSBSSBHCCBBCSTTHTTSTTTEEEE CS
     Trypsin  27 CgGslisen.wvlTAaHCvsnasdvkvvlgehnlkksegkeqklkvekvivhpnynpstldnDiallklkepvklgdtvrpiclpaassslpvgttclv 124
                  +G++++e+ ++lT+aH+v+na +v+v       + ++g   +++v+         +++   D+a +k+k     g +  ++ l + s++l+vg  ++v
  KOO23479.1  64 GSGVIVNEEgFILTNAHVVKNAAKVTV-------TLTDGRVFEGQVKG--------QDD-YMDLAAVKIKPT---GRKLPTAPLGR-SDDLQVG--DWV 140
                 4699999999***********555544.......66777544445555........444.48*********9...99999999999.7778888..*** PP

                 EESSBSSTSSBSSBEEEEEEEEEEHHHHHHH...TTTTSTTTEEEEESTTSSSBCTTTTTTSEEEETTTEEEEEEEEESSSSCTTSEEEEEEGGGG CS
     Trypsin 125 sGwgrtkekgksdtlqevevpvvsretcksa...ykgkvtenmlcagakeggkdacqGDSGGPlvcsdgelvGivswgkgcakgnrpgvytkvssy 217
                 +++g+           +v++ +vs+ + + a   +++  + n+++++a     ++++G+SGGPl+++ ge++Gi+++ +  a g  +g++++++++
  KOO23479.1 141 IAIGNAVGLD-----STVTLGIVSSLQRSAAevgIPN-KKVNFIQTDA-----AINPGNSGGPLLNEFGEVIGINTAIRANAAG--IGFAIPIDTA 223
                 *****76666.....4566666666544444554555.589*******.....*************************999988..9****99866 PP

>> PDZ_2  PDZ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.2   0.0      0.55   9.9e+02      29      44 ..     130     146 ..     123     163 .. 0.78
   2 !   46.2   0.0   2.4e-15   4.2e-12       1      80 [.     239     336 ..     239     338 .. 0.97

  Alignments for each domain:
  == domain 1  score: 0.2 bits;  conditional E-value: 0.55
                 GT..--TT-EEEEETTB CS
       PDZ_2  29 kag.lkagDvilkvdgk 44 
                 +++ l+ gD ++++++ 
  KOO23479.1 130 RSDdLQVGDWVIAIGNA 146
                 55559********9876 PP

  == domain 2  score: 46.2 bits;  conditional E-value: 2.4e-15
                 ....XX------....................-EEEEEE-TTSGGGGT.--TT-EEEEETTB--SSHHHHHHHHHTS-TT-EEEEEEEETTEEEEEEE CS
       PDZ_2   1 pylGvsvsdeed..................tggvlvvsVkeggPaakaglkagDvilkvdgkkvksledlislllkkkpGdtVkltvlRdgkkktvev 80 
                 +ylG+s+s +++                   +g+lv  V +++Paakag+k+ D i ++dgk+vks +d +s + + k G+ +  +++R+ k+++++v
  KOO23479.1 239 AYLGISMSTLTPdsarqnnadpnsnvelpeISGALVLAVAPETPAAKAGFKKFDLIQELDGKAVKSAADAQSIVDNCKVGQSLVAKIIRGPKTLSLNV 336
                 69****************************99***************************************************************998 PP

>> PDZ_6  PDZ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.3   0.1      0.02        36      15      27 ..     133     145 ..     124     151 .. 0.85
   2 !   24.5   0.1   9.8e-09   1.8e-05       2      44 ..     274     314 ..     273     327 .. 0.89

  Alignments for each domain:
  == domain 1  score: 4.3 bits;  conditional E-value: 0.02
       PDZ_6  15 GlrvGDiilsvNG 27 
                  l+vGD ++++++
  KOO23479.1 133 DLQVGDWVIAIGN 145
                 49********986 PP

  == domain 2  score: 24.5 bits;  conditional E-value: 9.8e-09
       PDZ_6   2 VtaVdpgsPAdrAGlrvGDiilsvNGqpveglsladvaallrg 44 
                 V aV p++PA++AG++  D+i +++G+ v  +s ad+++++ +
  KOO23479.1 274 VLAVAPETPAAKAGFKKFDLIQELDGKAV--KSAADAQSIVDN 314
                 789**************************..********9984 PP

>> Peptidase_S46  Peptidase S46
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.9   0.0   0.00028      0.51      47      70 ..      62      85 ..      55      93 .. 0.89
   2 !   14.5   0.2   5.9e-06     0.011     622     651 ..     174     204 ..     161     216 .. 0.87

  Alignments for each domain:
  == domain 1  score: 8.9 bits;  conditional E-value: 0.00028
                   TTEE-EE-STT-EEEE-HHHHHHH CS
  Peptidase_S46 47 ggCtasfVSpeGLvlTNHHCayga 70
                   g  ++ +V +eG +lTN H++ +a
     KOO23479.1 62 GQGSGVIVNEEGFILTNAHVVKNA 85
                   889*****************9876 PP

  == domain 2  score: 14.5 bits;  conditional E-value: 5.9e-06
                    EEEEE.ES----TT-TT-EEE-TTS-EEEEE CS
  Peptidase_S46 622 pvnfl.stnDitGGNSGSPvlngkgelvGla 651
                    +vnf+ +++ i  GNSG P+ln+ ge++G++
     KOO23479.1 174 KVNFIqTDAAINPGNSGGPLLNEFGEVIGIN 204
                    7999845678899****************97 PP

>> LSM  LSM domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.6   0.0   1.2e-06    0.0022       9      34 ..      86     111 ..      82     117 .. 0.92

  Alignments for each domain:
  == domain 1  score: 17.6 bits;  conditional E-value: 1.2e-06
                 SEEEEEETTSEEEEEEEEEEETTSEE CS
         LSM   9 kkvtvelkngrelrGtLkgfDqfmNl 34 
                  kvtv l++gr+++G++kg D++m l
  KOO23479.1  86 AKVTVTLTDGRVFEGQVKGQDDYMDL 111
                 58**********************65 PP

>> PDZ  PDZ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.3   0.0     0.059   1.1e+02      43      55 ..     132     145 ..     123     168 .. 0.80
   2 !   11.9   0.0   0.00012      0.22      23      66 ..     252     310 ..     231     335 .. 0.77

  Alignments for each domain:
  == domain 1  score: 3.3 bits;  conditional E-value: 0.059
                 T.SSTTEEEEEETT CS
         PDZ  43 g.lkvGDkIlsvNg 55 
                   l+vGD ++++++
  KOO23479.1 132 DdLQVGDWVIAIGN 145
                 33**********98 PP

  == domain 2  score: 11.9 bits;  conditional E-value: 0.00012
                 S...............SSSSEEEEEECTTSHHHHHTSSTTEEEEEETTEETTTSHHHHH CS
         PDZ  23 r...............gdkgifvsevlpggaaeadglkvGDkIlsvNgvdvenvsheea 66 
                 +               +  g+ v  v p  +a+++g k+ D I + +g+ v++ ++ + 
  KOO23479.1 252 SarqnnadpnsnvelpEISGALVLAVAPETPAAKAGFKKFDLIQELDGKAVKSAADAQS 310
                 4444555556666777999**********5555555***************99987665 PP

>> Peptidase_S32  Equine arteritis virus serine endopeptidase S32
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.1   0.3     0.012        22     114     158 ..      62     108 ..      58     149 .. 0.71
   2 ?    9.1   0.0   0.00038      0.69     190     230 ..     165     209 ..     144     219 .. 0.72

  Alignments for each domain:
  == domain 1  score: 4.1 bits;  conditional E-value: 0.012
                    EEEEEEECTTEEEEEEEHHHH-.TSEEEEEETTEE.EEEEEEEETTE CS
  Peptidase_S32 114 GsGgvftidgevvvvtashvlg.dnkarvsivgas.qtltfktkGDy 158
                    G G+    ++e  ++t +hv+  + k +v+ ++ +  + + k + Dy
     KOO23479.1  62 GQGSGVIVNEEGFILTNAHVVKnAAKVTVTLTDGRvFEGQVKGQDDY 108
                    5555555678889*******984556666665543033444555555 PP

  == domain 2  score: 9.1 bits;  conditional E-value: 0.00038
                    EEEEEEE-SS-EE---....-GGGTT-EEEETTE.EEEEEEEEET CS
  Peptidase_S32 190 gveegllgkevalcft....kcGDsGspvvdedgelvGvhtGsnk 230
                      e g+  k+v ++ t    ++G+sG p+++e ge++G+ t    
     KOO23479.1 165 AAEVGIPNKKVNFIQTdaaiNPGNSGGPLLNEFGEVIGINTAIRA 209
                    5556666666666655333368******************97433 PP

>> Hfq  Hfq protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.0   2.9e-05     0.051       9      37 ..      81     109 ..      77     115 .. 0.92

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 2.9e-05
                 HHHCT-EEEEEETTS-EEEEEEEEE-SSE CS
         Hfq   9 lrkekipvtifLvnGiklkGviksfDnft 37 
                 + k+  +vt+ L+ G  ++G++k+ D+++
  KOO23479.1  81 VVKNAAKVTVTLTDGRVFEGQVKGQDDYM 109
                 67999***********************8 PP

>> Peptidase_S29  Hepatitis C virus NS3 protease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   0.00018      0.32     105     144 ..     184     221 ..     165     226 .. 0.77

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00018
  Peptidase_S29 105 elkGssGsPilCdsGhvvGllvaavcsggvvkavrfv.Pve 144
                       G sG+P+l + G v+G+ +a++    ++  + f  P++
     KOO23479.1 184 INPGNSGGPLLNEFGEVIGINTAIRA---NAAGIGFAiPID 221
                    5569****************999864...455555555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (355 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       350  (0.0195214); expected 358.6 (0.02)
Passed bias filter:                      306  (0.0170673); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.44u 0.25s 00:00:00.69 Elapsed: 00:00:00.38
# Mc/sec: 2786.21
//
Query:       KOO23480.1  [L=202]
Description: exostosin-like glycosyltransferase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.8e-12   45.7   0.0    6.2e-12   45.3   0.0    1.2  1  Exostosin  Exostosin family


Domain annotation for each model (and alignments):
>> Exostosin  Exostosin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.3   0.0   3.5e-16   6.2e-12     190     298 ..      17     117 ..       5     119 .. 0.77

  Alignments for each domain:
  == domain 1  score: 45.3 bits;  conditional E-value: 3.5e-16
   Exostosin 190 rrsesgkireklleeckgdpdadickgkqctkgrskedylellassrFClvppGdsptsrrlfdallagCIPViisdqielPfedvldwrefsvfvpek 288
                 r+ +s+ +r+ l++    +p +++ +++++        y e+ as r+Cl p G   +  rl+ a+ agCIPV++s q+   fed++d+ +f+++  +k
  KOO23480.1  17 REAYSEGVRQLLWKYQRLTPGFKVVDRSPT--------YAEDYASTRYCLAPLGVG-WGVRLLWAIEAGCIPVLFSSQVAAWFEDAIDYGSFALRGLPK 106
                 555666666666665544444444444442........9*****************.*************************************96555 PP

   Exostosin 289 dvpe.lksilr 298
                  + + l  +l+
  KOO23480.1 107 TALRtLPAVLE 117
                 54443666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (202 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       347  (0.0193541); expected 358.6 (0.02)
Passed bias filter:                      290  (0.0161749); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.21s 00:00:00.59 Elapsed: 00:00:00.36
# Mc/sec: 1683.41
//
Query:       KOO23481.1  [L=486]
Description: hypothetical protein Ctob_009255 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00014   21.2   0.0    0.00041   19.7   0.0    1.9  1  EF-hand_1  EF hand
    0.00089   19.0   0.0     0.0036   17.1   0.0    2.0  1  EF-hand_6  EF-hand domain
     0.0093   15.4   0.0       0.02   14.3   0.0    1.6  1  EF-hand_5  EF hand
  ------ inclusion threshold ------
      0.017   15.6   0.0      0.038   14.4   0.0    1.6  1  EF-hand_7  EF-hand domain pair


Domain annotation for each model (and alignments):
>> EF-hand_1  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.7   0.0   9.2e-08   0.00041       3      28 ..      70      95 ..      68      96 .. 0.89

  Alignments for each domain:
  == domain 1  score: 19.7 bits;  conditional E-value: 9.2e-08
                HHHHHHHTTTSSSEEEHHHHHHHHHH CS
   EF-hand_1  3 keiFrefDkDgdGkIdfeEfkellkk 28
                 e+ +++D D+dG I++ Ef+++l++
  KOO23481.1 70 AEVLAKYDGDHDGLISKAEFLAALND 95
                68899*****************9976 PP

>> EF-hand_6  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   0.0   7.9e-07    0.0036       4      27 ..      71      94 ..      68     102 .. 0.88

  Alignments for each domain:
  == domain 1  score: 17.1 bits;  conditional E-value: 7.9e-07
   EF-hand_6  4 eaFklfDkdgdGkidaeElrkalr 27
                e+  ++D d+dG i+++E+ +al+
  KOO23481.1 71 EVLAKYDGDHDGLISKAEFLAALN 94
                67789******************8 PP

>> EF-hand_5  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.3   0.0   4.6e-06      0.02       3      22 ..      71      90 ..      69      94 .. 0.85

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 4.6e-06
                HHHHHH-SS-SSCE-HHHHH CS
   EF-hand_5  3 dtFqaiDlNgDGkIskeELk 22
                +++ + D ++DG Isk E+ 
  KOO23481.1 71 EVLAKYDGDHDGLISKAEFL 90
                578899************96 PP

>> EF-hand_7  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.4   0.0   8.6e-06     0.038       3      30 ..      68      95 ..      66     120 .. 0.73

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 8.6e-06
   EF-hand_7  3 klkeaFkelDtdgdgyldkeellrllrk 30
                 + e+  ++D d+dg ++k+e+l +l  
  KOO23481.1 68 TIAEVLAKYDGDHDGLISKAEFLAALND 95
                6778888999999999999998877664 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (486 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       476  (0.0265492); expected 358.6 (0.02)
Passed bias filter:                      434  (0.0242066); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.50u 0.22s 00:00:00.72 Elapsed: 00:00:00.36
# Mc/sec: 3997.09
//
Query:       KOO23482.1  [L=300]
Description: nif3-like protein 1 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.1e-35  123.5   0.0    1.3e-35  123.2   0.0    1.0  1  NIF3             NIF3 (NGG1p interacting factor 3)
  ------ inclusion threshold ------
      0.051   13.6   0.1       0.11   12.6   0.1    1.5  1  Phageshock_PspD  Phage shock protein PspD (Phageshock_PspD)


Domain annotation for each model (and alignments):
>> NIF3  NIF3 (NGG1p interacting factor 3)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  123.2   0.0   1.4e-39   1.3e-35       3     243 ..      22     279 ..      20     285 .. 0.90

  Alignments for each domain:
  == domain 1  score: 123.2 bits;  conditional E-value: 1.4e-39
        NIF3   3 vevleelaplelaeswDnvGlqvg...dpek...evkkvllaldlteevleeAiekgadliithHPlifkplkrlteddykkrllkkliknnislysaH 95 
                  + le+ +p++ a    ++Gl +g   +  +       v++++dlte+vl+eAi+ +a++ii+   +  +pl++l+ d++++r++ +++++ i+  ++ 
  KOO23482.1  22 SSSLERRFPKKFASAGHTSGLTIGtlrE--AergGTAVVVICVDLTEQVLAEAISLHANVIIACSLFPSEPLRSLRVDEPVGRIVLRCAQQSIAAHCLS 118
                 6789********************7542..234588889************************************************************ PP

        NIF3  96 tnlDaapgGvndwlakalglekieplepskeekkeeeeglgrigeleepvsleelakklkkklglekvrva...........g.dldkkvkkvaicaGs 182
                  ++ +apgGv+dwlak +    ++p+ p+ e    +e+g gr+ e++e++sl++++ +lk+ lg+ ++r++           + + +  +k++a+  G 
  KOO23482.1 119 SACANAPGGVADWLAKSIASGATRPIVPHAE---CAEAGEGRLLECNEAISLSAIIARLKDILGVRHLRISlgavvdelniaKaSDSCFIKSIAVHIGE 214
                 ****************************986...5899***************************99555555555555554657888899******** PP

        NIF3 183 Gaslie.eakakga...DlliTGelkhhealdakekgiavidvgHyatErvflealaelLkeklk 243
                 G++l++  +++ ga    ++++Ge+ h + l+a +kgi v+++g +  Er fl++l++ L++++ 
  KOO23482.1 215 GGELLHhLMRQPGAafsGVFLSGEMPHADLLAASAKGIIVVLAGQSTVERAFLRQLRQDLQAEFT 279
                 *****9556666776766*******************************************9986 PP

>> Phageshock_PspD  Phage shock protein PspD (Phageshock_PspD)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.1   1.2e-05      0.11      13      35 ..     116     138 ..     105     147 .. 0.83

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 1.2e-05
  Phageshock_PspD  13 vlltAlrYgPaGvAGWAvksvAr 35 
                       l +A   +P+GvA W  ks+A 
       KOO23482.1 116 CLSSACANAPGGVADWLAKSIAS 138
                      57789999************984 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (300 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       442  (0.0246528); expected 358.6 (0.02)
Passed bias filter:                      374  (0.0208601); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.46u 0.25s 00:00:00.71 Elapsed: 00:00:00.42
# Mc/sec: 2131.19
//
Query:       KOO23483.1  [L=312]
Description: transmembrane bax inhibitor motif-containing protein 4 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.5e-35  121.4  37.5    4.5e-35  121.4  37.5    2.0  2  Bax1-I    Inhibitor of apoptosis-promoting Bax1


Domain annotation for each model (and alignments):
>> Bax1-I  Inhibitor of apoptosis-promoting Bax1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.4   0.4     0.013   2.4e+02      33      58 ..      32      57 ..      20      77 .. 0.54
   2 !  121.4  37.5   2.5e-39   4.5e-35       2     206 ..      99     305 ..      98     306 .. 0.86

  Alignments for each domain:
  == domain 1  score: 1.4 bits;  conditional E-value: 0.013
      Bax1-I 33 flslhivlflvvilaplalvflslsa 58
                ++s++++++  v+l+ +al+ ++ls+
  KOO23483.1 32 NSSTMPIMMGFVFLGYFALLTVYLSF 57
                33333333333444444444445444 PP

  == domain 2  score: 121.4 bits;  conditional E-value: 2.5e-39
      Bax1-I   2 aflrkvYgllalgllltalvaavvlsspa....qlflslhivlflvvilaplalvflslsaarlkkkssalalallllftlleGlslspillvyt.... 92 
                 +f+ kvYg+l+++l++t+++ +++++++       +++ + ++ l +++++l +++  ++  ++++++ +  l+ll+lftl +++++++ + +y+    
  KOO23483.1  99 QFIVKVYGILCIQLAVTVAICFGMMQFGGyklmVWTYTDGAWTRLASFVGTLFFLI--SLMCYKNRHPLN--LILLGLFTLSMSYLIGVSCTAYAalgy 193
                 8***********************99998855433333334444445554444444..344456666666..**************************9 PP

      Bax1-I  93 gaiilqaflltaaifgglslyalttkrdlsglggflfagligliiaslvnlFlp.ssalelaisylgvllfsglilyDtqkiierageygeedailaal 190
                 + ++++a+++t ++f+gl++++++ k d+s+lg +l ++++ l+i++l++++   s a+  a+ ++g llf+++il+Dt++ii+ + ey+++  +l+a+
  KOO23483.1 194 SVVVVEALAITSLLFVGLTMFVMYSKMDFSFLGMVLPVLFLSLLIFGLFTMLAFdSFAMRQAYALGGCLLFVLYILFDTSMIIQ-HLEYDDY--VLGAV 289
                 99************************************************86445****************************8.89**999..***** PP

      Bax1-I 191 sLyldfinlFlslLri 206
                 +LyldfinlF+++L+ 
  KOO23483.1 290 ELYLDFINLFMFVLQC 305
                 **************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (312 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1007  (0.056166); expected 358.6 (0.02)
Passed bias filter:                      326  (0.0181828); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.53u 0.27s 00:00:00.80 Elapsed: 00:00:00.45
# Mc/sec: 2061.61
//
Query:       KOO23484.1  [L=327]
Description: 3-hydroxyisobutyrate dehydrogenase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.2e-32  113.3   0.9    1.9e-32  112.6   0.9    1.3  1  NAD_binding_2   NAD binding domain of 6-phosphogluconate dehy
    1.9e-21   76.6   0.5    6.2e-21   74.9   0.0    2.1  2  NAD_binding_11  NAD-binding of NADP-dependent 3-hydroxyisobut
    9.7e-05   21.8   0.0    0.00015   21.2   0.0    1.3  1  2-Hacid_dh_C    D-isomer specific 2-hydroxyacid dehydrogenase
    0.00019   22.0   0.3    0.00042   20.8   0.3    1.6  1  F420_oxidored   NADP oxidoreductase coenzyme F420-dependent
    0.00028   20.8   0.5    0.00047   20.1   0.5    1.4  1  3HCDH_N         3-hydroxyacyl-CoA dehydrogenase, NAD binding 
     0.0019   17.8   0.1     0.0032   17.0   0.1    1.3  1  IlvN            Acetohydroxy acid isomeroreductase, NADPH-bin
     0.0071   16.7   0.0      0.014   15.8   0.0    1.4  1  UDPG_MGDP_dh_C  UDP-glucose/GDP-mannose dehydrogenase family,
  ------ inclusion threshold ------
      0.086   13.0   0.0       0.19   11.9   0.0    1.6  1  UDPG_MGDP_dh    UDP-glucose/GDP-mannose dehydrogenase family,


Domain annotation for each model (and alignments):
>> NAD_binding_2  NAD binding domain of 6-phosphogluconate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  112.6   0.9   8.7e-36   1.9e-32       1     155 [.      14     172 ..      14     174 .. 0.97

  Alignments for each domain:
  == domain 1  score: 112.6 bits;  conditional E-value: 8.7e-36
                    EEEEE--SHHHHHHHHHHHHTT-EEEEE-SSHHHHHHHHHTTEEE-SSHHHHHHHCSEEEE-SSSHHHHHHHHHS....HCCC--TT-EEEE-S-- CS
  NAD_binding_2   1 kigfiGlGvMGsnmalnllkagykvavynrtkekveelvaegakaaesieelvasldvvitmvkagkavdevieg....llealkkgdilidgsts 92 
                    ++++iGlG MG +m  n+++agyk+ vy++++++++e++a+ga++a+s++e++a++d+v+tmv++++  ++v+      +l+a+++g++ + +st+
     KOO23484.1  14 NVALIGLGAMGLPMLDNFIAAGYKMRVYDVNASAMKEAAAKGADGAASPAEAAAGADAVVTMVPNDSVLRKVTCApetgILHAMRPGSVHVSCSTV 109
                    689**********************************************************************999999***************** PP

                    -HHHHHHHHHHHHHTT-EEEEEEEESHHHHHHHT-EEEEEEE-HHHHHHHHHHHHHHEEEEEE CS
  NAD_binding_2  93 spedtrelakelkekglkfldaPVSGGeegAekGtLsimvGGseeafervkpvleaigakvth 155
                    +p+++rela+  + +g  f++aP+   + g ++   s+ vGG++ a++ ++p+lea ++ +++
     KOO23484.1 110 HPDTSRELARLHATAGSAFVGAPIFARADGVARRLASFCVGGEAGAIAMARPLLEANANGIFE 172
                    ************************999999999988********************9998875 PP

>> NAD_binding_11  NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.1       1.5   3.5e+03      87     112 ..      33      58 ..      27      65 .. 0.73
   2 !   74.9   0.0   2.8e-24   6.2e-21       1     119 [.     178     302 ..     178     305 .. 0.89

  Alignments for each domain:
  == domain 1  score: -1.8 bits;  conditional E-value: 1.5
  NAD_binding_11  87 eagaplpllalaeqlyaaaaaegggd 112
                     +ag+++++  + ++ +++aaa+g ++
      KOO23484.1  33 AAGYKMRVYDVNASAMKEAAAKGADG 58 
                     67788888888888888887776654 PP

  == domain 2  score: 74.9 bits;  conditional E-value: 2.8e-24
  NAD_binding_11   1 GaGqavKlvnnlllainlaaasEalvlaekaGldpekvlevinassgrsnalenklpqrvlsrd.......fdpgFaldlmlKDlglalelarea 88 
                     GaG++vK++ n+++a ++  ++Eal laek Gld ++v++++n+    + + + +   rv++r+         pgF+l+l lKD+ la ++ar++
      KOO23484.1 178 GAGNVVKICGNYMIASTIQTCAEALSLAEKSGLDRQAVMRMLNTTIFDCLIYRGYGD-RVAQRShvpgeplVGPGFQLELGLKDVTLACDVARQV 271
                     9************************************************99876654.55555422222226799******************** PP

  NAD_binding_11  89 gaplpllalaeqlyaaaaaegggdaDhsaiv 119
                     +ap+p++ l +  + aaaa+g g+ D sa++
      KOO23484.1 272 QAPMPFATLLHDRFLAAAARGRGKLDWSAVA 302
                     **************************99986 PP

>> 2-Hacid_dh_C  D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.2   0.0   6.6e-08   0.00015      36     108 ..      12      85 ..       2     108 .. 0.82

  Alignments for each domain:
  == domain 1  score: 21.2 bits;  conditional E-value: 6.6e-08
                   TSEEEEES-SHHHHHHHHHHHHTT-EEEEESSSHHHHHCHHHHTC.EECSHHHHHHH-SEEEE-S--STTTTTS CS
  2-Hacid_dh_C  36 gktvGiiGlGrIGqavakrlkafgmkviaydrskkkeeeeeelgv.elvsleellaesDivslhlpltpetrhl 108
                    k v++iGlG++G  + + + a g k+ +yd++ ++ +e++++g+   +s  e+ a +D v+ ++p     r++
    KOO23484.1  12 VKNVALIGLGAMGLPMLDNFIAAGYKMRVYDVNASAMKEAAAKGAdGAASPAEAAAGADAVVTMVPNDSVLRKV 85 
                   5899*******************************99999999996777****************987655555 PP

>> F420_oxidored  NADP oxidoreductase coenzyme F420-dependent
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.8   0.3   1.9e-07   0.00042       2      71 ..      15      78 ..      14      88 .. 0.82

  Alignments for each domain:
  == domain 1  score: 20.8 bits;  conditional E-value: 1.9e-07
                   EEEETTSHHHHHHHHHHHHTTS-GGCEEEEEESSCCCHHHHHHHHC-EEECECHHHHHHH-SEEEE-S-H CS
  F420_oxidored  2 igiiGaGnmgealasgllaagaqpheivvansrnpekaeelaeelgvkvtavdneeaaeeadvvvlavkp 71
                   +++iG G mg  ++ +++aag   ++++v  + n + ++e+a++  ++  a + +eaa+ ad vv  v+ 
     KOO23484.1 15 VALIGLGAMGLPMLDNFIAAG---YKMRVY-DVNASAMKEAAAKG-ADGAA-SPAEAAAGADAVVTMVPN 78
                   89*******************...999955.77777777776664.55555.68999999*****99986 PP

>> 3HCDH_N  3-hydroxyacyl-CoA dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.1   0.5   2.1e-07   0.00047       1      48 [.      14      61 ..      14      86 .. 0.87

  Alignments for each domain:
  == domain 1  score: 20.1 bits;  conditional E-value: 2.1e-07
                EEEEE--SCCHHHHHHHHHHTT-EEEEE-S-HHHHHHHHHHHHHHHHC CS
     3HCDH_N  1 kvaviGaGtmGagiaavfasagleVvlvdiseealekalekiekslek 48
                +va iG G mG  +   f++ag++ +++d++++a+++a++k ++  ++
  KOO23484.1 14 NVALIGLGAMGLPMLDNFIAAGYKMRVYDVNASAMKEAAAKGADGAAS 61
                69***********************************99987775554 PP

>> IlvN  Acetohydroxy acid isomeroreductase, NADPH-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.0   0.1   1.4e-06    0.0032       5      72 ..      13      81 ..      10     102 .. 0.85

  Alignments for each domain:
  == domain 1  score: 17.0 bits;  conditional E-value: 1.4e-06
                S-EEEES-SHHHHHHHHHHHHTT--EEEEE-TT-HHHHHHHHTT-EEEEHHHHHHT-SEEEE-S-.HHH CS
        IlvN  5 kkiaviGyGsqGhaqalnlrdsgldvvvglregsksvkkAkeegfevltvaeavkkadvvmiliP.Del 72
                k++a+iG G+ G     n+  +g ++ v   + s+  + A + +   ++ aea++ ad v++++P D++
  KOO23484.1 13 KNVALIGLGAMGLPMLDNFIAAGYKMRVYDVNASAMKEAAAKGADGAASPAEAAAGADAVVTMVPnDSV 81
                89**************************9999996666666656668899***************4444 PP

>> UDPG_MGDP_dh_C  UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.0   6.1e-06     0.014      22      78 ..      27      80 ..      22      89 .. 0.88

  Alignments for each domain:
  == domain 1  score: 15.8 bits;  conditional E-value: 6.1e-06
                    HHHHHHHCTSEEEEE-SSTHHCCCCHHGGBTCCEEES-CHHHHTT-SEEEE-S--GG CS
  UDPG_MGDP_dh_C 22 iieeLleegaevkiyDPkvkeeaveaeleekgvevvdsleealkgadaiviltehde 78
                    ++++  ++g+++++yD ++++ +++a   +kg+  ++s++ea++gada+v +++ d 
      KOO23484.1 27 MLDNFIAAGYKMRVYDVNASAMKEAA---AKGADGAASPAEAAAGADAVVTMVPNDS 80
                    56778899************999888...7899*******************98875 PP

>> UDPG_MGDP_dh  UDP-glucose/GDP-mannose dehydrogenase family, central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   8.6e-05      0.19       5      45 ..     182     222 ..     179     234 .. 0.91

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 8.6e-05
  UDPG_MGDP_dh   5 liKlaaNaflatkIsfiNelanlcealgidveeVieavgld 45 
                   ++K+  N + a  I  + e   l+e+ g+d + V++++++ 
    KOO23484.1 182 VVKICGNYMIASTIQTCAEALSLAEKSGLDRQAVMRMLNTT 222
                   79**********************************99975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (327 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       464  (0.0258799); expected 358.6 (0.02)
Passed bias filter:                      367  (0.0204696); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.46u 0.24s 00:00:00.70 Elapsed: 00:00:00.39
# Mc/sec: 2489.05
//
Query:       KOO23485.1  [L=259]
Description: hypothetical protein Ctob_009264 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    0.00011   21.4   0.0    0.00022   20.4   0.0    1.4  1  Thymidylat_synt  Thymidylate synthase


Domain annotation for each model (and alignments):
>> Thymidylat_synt  Thymidylate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.4   0.0   1.2e-08   0.00022     105     208 ..     138     249 ..     107     255 .. 0.81

  Alignments for each domain:
  == domain 1  score: 20.4 bits;  conditional E-value: 1.2e-08
                      TTSSB-HHHHHHHHHHHSTT-ST-EEE-.--GGGGG..........G.SSS--SEEEEEEEE..SEETEEEEEEEEEEEETTTHHHHHHHHHHH CS
  Thymidylat_synt 105 egkkidqlakvidqlkenpdsRriivsa.wnpaeld..........k.maLppChvlfqfyvkdkkegkLslqlyqRSaDvflGvpFNiasyal 186
                      +   ++++a+vid lk++p s+r  ++  ++ +e            k + ++ C   +++y +   +gkL+++   R +   + v  Ni  +a+
       KOO23485.1 138 RAGITQKIANVIDCLKSEPLSKRATITFpFTGEEAGgtggsetndwKyQGMNKCCRELHLYLE---DGKLKCTAIVRMQNANIFVK-NIHFFAT 227
                      45567889***********9988776652666555477788888776588************4...567********999998765.******* PP

                      HHHHHHHHHT-EEEEEEEEEEE CS
  Thymidylat_synt 187 Lthmlaqvtglkpgelihtigd 208
                      L+ ++a++ ++++ge++h i++
       KOO23485.1 228 LLDVVAKELNVEVGEYTHWITN 249
                      ******************9976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (259 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       517  (0.028836); expected 358.6 (0.02)
Passed bias filter:                      430  (0.0239835); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.24s 00:00:00.67 Elapsed: 00:00:00.38
# Mc/sec: 2033.74
//
Query:       KOO23486.1  [L=166]
Description: hypothetical protein Ctob_009260 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.7e-07   29.0   0.0    6.8e-07   28.8   0.0    1.0  1  Exostosin  Exostosin family


Domain annotation for each model (and alignments):
>> Exostosin  Exostosin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.8   0.0   3.8e-11   6.8e-07      33     188 ..       9     158 ..       5     166 .] 0.79

  Alignments for each domain:
  == domain 1  score: 28.8 bits;  conditional E-value: 3.8e-11
   Exostosin  33 ysaeqfllesllhsrveeyvrtsdpaeAdlffvpf.yaslsenrhllnsalqdrrelqrellewlksqlpy.WnrsgGrdHfivlsrptwafrrtakdv 129
                 +++++ +l++ll+ +     + ++ + Adl +vp+  ++++              e++++++ +++++ p+ W+    rdH++  s + + ++ ++   
  KOO23486.1   9 FNTYHLFLATLLADA---PSLAASASLADLALVPAfGTNMDGLL-----------EYYEHAAAQVARRFPAaWR---ERDHVWITSGDGGGCDLNRLPS 90 
                 666666777777555...38899999999999999344455555...........59999999999999999*7...5****************88888 PP

   Exostosin 130 dwgsamlv.....nltslfse...eqyrpgkdvvv.PypspfhpeisqwqaaspsnrRktllvFagel 188
                   gs++ +     n+t  + +   ++ rpgkdv++ P ++ + ++       +p ++R+  ++Fag++
  KOO23486.1  91 LRGSIIAAhylklNVTEAYATsrdSCGRPGKDVAIpPDVPTVAQPAYLARGLAPLEQRPGTFFFAGNV 158
                 8999999899999766666541116789*******8877777777999999****************7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (166 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       284  (0.0158403); expected 358.6 (0.02)
Passed bias filter:                      261  (0.0145574); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.26s 00:00:00.63 Elapsed: 00:00:00.40
# Mc/sec: 1244.27
//
Query:       KOO23487.1  [L=138]
Description: hypothetical protein Ctob_009262 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (138 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       633  (0.0353059); expected 358.6 (0.02)
Passed bias filter:                      298  (0.0166211); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.24s 00:00:00.60 Elapsed: 00:00:00.37
# Mc/sec: 1106.19
//
Query:       KOO23488.1  [L=257]
Description: redoxin domain-containing protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.7e-20   72.6   0.0    3.6e-20   72.2   0.0    1.2  1  Redoxin          Redoxin
     0.0094   15.9   0.0      0.013   15.4   0.0    1.2  1  AhpC-TSA         AhpC/TSA family
  ------ inclusion threshold ------
      0.047   12.3   0.2      0.066   11.8   0.2    1.2  1  P22_CoatProtein  P22 coat protein - gene protein 5


Domain annotation for each model (and alignments):
>> Redoxin  Redoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   72.2   0.0   6.1e-24   3.6e-20      37     147 .]       2     124 ..       1     124 [. 0.92

  Alignments for each domain:
  == domain 1  score: 72.2 bits;  conditional E-value: 6.1e-24
                 STTT-HHHHHTHH..HHHTHHHHHHCSTTTEEEEEESSSHHHHHHHHH..........TT-TSEEEE-TTSHHHHHTT-TTEEE.GGGEEE-EEEEEEE CS
     Redoxin  37 pgafcPtCsaehp..yleklaellkekgvdvvavvadndafvkefwgk..........eglkfpvlsDgsaaftkalGlrleedaseglrtpryavide 123
                 pgaf+PtC++ h+   ++   + l++ ++++++vv++nd++v+ +w++          ++l++ +++D+ +++ +alG      ++ g+r++r+a+i e
  KOO23488.1   2 PGAFTPTCTNDHLpgLIRSAPA-LADLNIKKIVVVTANDNYVNTAWSQsvcsclkldqDNLPVEFAADPVGELLEALGTIAFLGKGLGVRSKRFALIAE 99 
                 9*************55555555.5******************************************************8877777777*********** PP

                 TTEEEEEEESSSCHT.STTSHHHHH CS
     Redoxin 124 dgkvvylevepepet.eesnaeavl 147
                 dg+v+++  e++p + ++ +aea+l
  KOO23488.1 100 DGVVKHVVIEEDPDQlTVTSAEALL 124
                 *************769999999876 PP

>> AhpC-TSA  AhpC/TSA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.0   2.2e-06     0.013      34     123 ..       2     105 ..       1     106 [. 0.85

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 2.2e-06
                 STST-CCHHH.HHHHHHHCHHHCCCTTE.EEEEEESSSCHHHHHHHHH-H..........SSEEEE-TTSHHHHHTT-EETT...TTECSCEEEEE-TT CS
    AhpC-TSA  34 pkdwcpvCtt.elpalaklyeefkergv.evigvsvdspeshkkfiekes.........lnfpllsDeegkvakaygvlkee...kglalratfvidke 118
                 p++++p Ct+ +lp l + +++++++++ +++ v++++ +   ++ +            l+++ ++D+ g++ +a+g +       g++ +   +i ++
  KOO23488.1   2 PGAFTPTCTNdHLPGLIRSAPALADLNIkKIVVVTANDNYVNTAWSQSVCsclkldqdnLPVEFAADPVGELLEALGTIAFLgkgLGVRSKRFALIAED 100
                 899*****9648***************95677777799998888888777888888899******************9955587778888888999999 PP

                 SBEEE CS
    AhpC-TSA 119 gkiry 123
                 g++++
  KOO23488.1 101 GVVKH 105
                 99987 PP

>> P22_CoatProtein  P22 coat protein - gene protein 5
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.2   1.1e-05     0.066      77     190 ..     103     221 ..      98     243 .. 0.88

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 1.1e-05
                      EEEE----EEEEEEEEGGG..GSSSHHHHHHHHHHHHHHHHHHHHHHHH......HHHHH-SEEEEESS-TTSSTTHHHHHHHHHHHHHHHCTB CS
  P22_CoatProtein  77 vtvkvgkqkgvdfelssaeralsledlserilkpaieklandieldlln......slaengslvvgkadaspntiikkwsdvadaesilkdlgv 164
                      v+ +v + + ++ +++sae  ls + + er   +a+ ++a + e + ++      +l ++ + ++  a+  + +++++++ va a  +    +v
       KOO23488.1 103 VKHVVIEEDPDQLTVTSAEALLSVAGVLERKARSAAAEMAVAAEIYKMKplealaFLKAQSATLLA-AGMDADELNEAIDIVAGASGFASAAQV 195
                      566777889999****************************98888888899998766666666666.89999999******************* PP

                      --T-EEEEE-HHHHHHHHHHHHSSSS CS
  P22_CoatProtein 165 ktdgrsavldpadekklagslaglea 190
                       t +  a  +p +++ ++ +la l +
       KOO23488.1 196 GTTEGGAAAEPSSAATIGAALAALAI 221
                      *****************999998865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (257 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       694  (0.0387082); expected 358.6 (0.02)
Passed bias filter:                      428  (0.0238719); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.39u 0.24s 00:00:00.63 Elapsed: 00:00:00.36
# Mc/sec: 2130.81
//
Query:       KOO23489.1  [L=480]
Description: poly glycohydrolase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.8e-40  138.7   0.0    4.2e-40  138.1   0.0    1.2  1  PARG_cat  Poly (ADP-ribose) glycohydrolase (PARG)


Domain annotation for each model (and alignments):
>> PARG_cat  Poly (ADP-ribose) glycohydrolase (PARG)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  138.1   0.0   2.3e-44   4.2e-40      43     332 ..      92     402 ..      63     406 .. 0.82

  Alignments for each domain:
  == domain 1  score: 138.1 bits;  conditional E-value: 2.3e-44
    PARG_cat  43 vtlsqeqiaallanaFfclfprqernkseekklpsinfdr.lfss.essseskaeklkcllhYFervt....ekepegvvsferkvlsk.......... 125
                   ls  q+  +lana+++ + +  + +++  +   ++f+r l+   + +s+  a+k  +ll YF++      +  +e +v+fer  +++          
  KOO23489.1  92 RDLSAAQCRGILANAMLGNVVDAMSGSKR--HKGGLDFSRqLLDVhRVRSSVAAHKTAALLLYFSQQLsiegTADDERTVTFERVECPSmeemssmleg 188
                 568999**************997773333..33344444315555588899999**********8777677667777*******877774444444444 PP

    PARG_cat 126 kekiedwsksekklskveveseglIe....dqskgalqvdFAnkyiGGgvlsrGcvQEeirflinPElivsmLfteklednealvivgaerfssytGYa 220
                  ++++ + +  +  ++++++  g++e    d+ +    v+FAn  +G g + + + QEei  +++PE  v+++f+ +++d e++ + g+ r++ y+GY 
  KOO23489.1 189 ATEVPLLPSDGVGQDDIRLH-AGSMEaawvDEPNCRGFVNFANADFGYGCFISSATQEEILQVCCPEFNVGLIFLGRMSDDEVINVYGCRRYVIYKGYL 286
                 44444444444444477776.45555111134666678************************************************************* PP

    PARG_cat 221 ssfrfagdyvd.ktprdslgrrkteivaiDAlefkkeekekqykkekilRelnKAyvgFksqekeke.........eeekvgiaTGnWGCGaFgGdpeL 309
                  +f+++g +   + +    gr  ++i+ iDA+       + +++k + +R+l+KAy+ F+      +         +  k  ++TG+WGCG+FgG p  
  KOO23489.1 287 GTFECTGPIPAsRGSGSGDGRCIHDILTIDACT------QGHFHKANQMRDLRKAYTSFAALAARATtvaapgsvrSVGKPIVSTGRWGCGVFGGFPAH 379
                 *********96366777789************9......579******************988888889****999999999***************** PP

    PARG_cat 310 KaliQllAasqagrelvyytfgd 332
                 K+  Q+lAa +ag +l ++tfg+
  KOO23489.1 380 KFTQQVLAARLAGVRLRFSTFGQ 402
                 *********************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (480 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       500  (0.0278878); expected 358.6 (0.02)
Passed bias filter:                      324  (0.0180713); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.51u 0.27s 00:00:00.78 Elapsed: 00:00:00.44
# Mc/sec: 3269.66
//
Query:       KOO23490.1  [L=193]
Description: deoxynucleotidyltransferase terminal-interacting protein 2 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.8e-29  101.3   0.1    4.3e-29  100.8   0.1    1.3  1  Fcf2      Fcf2 pre-rRNA processing
  ------ inclusion threshold ------
       0.11   11.9   0.0       0.13   11.7   0.0    1.1  1  DUF1523   Protein of unknown function (DUF1523)


Domain annotation for each model (and alignments):
>> Fcf2  Fcf2 pre-rRNA processing
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  100.8   0.1   4.8e-33   4.3e-29       2      94 ..      70     161 ..      69     163 .. 0.96

  Alignments for each domain:
  == domain 1  score: 100.8 bits;  conditional E-value: 4.8e-33
        Fcf2   2 kktagkkWfnlpkteltpelkrdlqlLklrnvldpkrfyKkedkkkklPkyfqvGtivegetefysarltrkerkrtlveellkdeeakkyak 94 
                 ++tag+ W ++++++lt+elkr+l l+k+r+++dpkrfy++ d+ k +PkyfqvGtiveg+++++ +rlt++erk +++ el++d +++k ak
  KOO23490.1  70 AETAGAAWGHMKAPTLTKELKRELLLIKMRDAVDPKRFYRSADDGKAFPKYFQVGTIVEGAEDGK-NRLTNRERKGSILAELMSDGTIRKRAK 161
                 689***************************************889*******************9.6********************999876 PP

>> DUF1523  Protein of unknown function (DUF1523)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   1.4e-05      0.13      48     100 ..      76     127 ..      31     145 .. 0.79

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 1.4e-05
     DUF1523  48 fyaqpdsksnsadgetrDvrfintvrpeekvmvYrNeDTgwgfPpYFKfdsad 100
                  + +++ +   +++ +r++ +i+  ++ + ++ Yr  D g  fP YF +++  
  KOO23490.1  76 AWGHMK-APTLTKELKRELLLIKMRDAVDPKRFYRSADDGKAFPKYFQVGTIV 127
                 566666.3444566799******************************998865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (193 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       323  (0.0180155); expected 358.6 (0.02)
Passed bias filter:                      264  (0.0147247); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.38u 0.26s 00:00:00.64 Elapsed: 00:00:00.41
# Mc/sec: 1416.31
//
Query:       KOO23491.1  [L=847]
Description: xaa-pro dipeptidase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
      4e-46  157.4   0.0    7.8e-46  156.4   0.0    1.5  1  Peptidase_M24  Metallopeptidase family M24
    4.3e-23   81.4   0.0    9.6e-23   80.2   0.0    1.5  1  AMP_N          Aminopeptidase P, N-terminal domain
    7.5e-09   35.3   0.0    1.1e-08   34.8   0.0    1.3  1  FAD_binding_3  FAD binding domain
      0.004   16.2   0.0     0.0095   15.0   0.0    1.5  2  SE             Squalene epoxidase


Domain annotation for each model (and alignments):
>> Peptidase_M24  Metallopeptidase family M24
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  156.4   0.0   1.8e-49   7.8e-46       2     194 ..     168     394 ..     167     433 .. 0.86

  Alignments for each domain:
  == domain 1  score: 156.4 bits;  conditional E-value: 1.8e-49
                    HHHHHHHHHHHHHHHHHHHHHTTCBHHHHHHHHHHHHHHHTT.TCEESSSSEEEEGGGGGSTTT.BC...SSSB--TTEEEEEEEEEEETTEEEEE CS
  Peptidase_M24   2 lirkaariasaaleavleaikpgvterelaaeieattlkrhg.arglafppivasgenaavlhy.tp...ndrvlkegdlvlidagaeydgyasDi 92 
                     +r aa ++s a+  v+++ + g+ e++l+a++  + ++ hg +r +a+  i+a+g+ +avlhy ++   n+r+l e d+ l+d+g+ey+ yasDi
     KOO23491.1 168 VMRYAAWVSSCAHSSVMREARAGMLEYQLEALFLFH-CAFHGgCRHQAYTCICACGPDGAVLHYgHAgapNERQLLETDMALLDMGCEYQFYASDI 262
                    69********************************77.655555*********************64478799999999****************** PP

                    EEEE.ECSSGSHHHHHHHHHHHHHHHHHHHC-STTSBHHHHHHHHHHHHHHT...................TBCCGBSSCSEEEESSSSSEEEEEE CS
  Peptidase_M24  93 trTv.lvGkftpeqrelyeavleaqeaaikavkpGvtlseidaaarevlesa...................glakffphglGHgvGlevhdegpsv 168
                    t  + l ++f+++qr +yeavl+ q+++++a++pGv++s++++ + +v  ++                   g+  f phglGH +G+++hd+g ++
     KOO23491.1 263 TCSFpLSDEFSADQRVVYEAVLDSQRQILNAMRPGVPWSDMHRLMWRVTLTHlskaglvrgdleamleanvGY-IFTPHGLGHLIGIDTHDVGGYL 357
                    ****7778*****************************************985555544444444455555666.9*****************8877 PP

                    SS...........STTCSSB--TTBEEEEEEEEEEET CS
  Peptidase_M24 169 sr...........esndgrkleeGmvftiEpgiyfap 194
                    ++           + ++ r+le+Gmv+t+Epg+yf++
     KOO23491.1 358 PHtpkrsdvnglkRLRTARVLEAGMVLTVEPGCYFID 394
                    7777889998876555899***************986 PP

>> AMP_N  Aminopeptidase P, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   80.2   0.0   2.1e-26   9.6e-23      15     114 ..       8     104 ..       3     112 .. 0.93

  Alignments for each domain:
  == domain 1  score: 80.2 bits;  conditional E-value: 2.1e-26
                 SEEEEEE-----EEET.TEE------HHHHHHH----SS-EEEEEESSEEEE...EEEE----HHHHHHH----HHHHHHHHHT-SEEEEGGGHHHHHH CS
       AMP_N  15 nsvvilaagkekyrsg.dveypFrqnsdFlYltGfnepdavlvlekeedkkehkstLfvprkdpekelWdGarlgleeakelfgvdeaepidelesala 112
                 ++v++l +g e yr++ d+e  Frq+s+F +l+G++epd+ +++    + ++++stLf+p+  pe+++W+G+   ++ +++ +gvd++  ++el++a+ 
  KOO23491.1   8 DGVILLRGGAEVYRYDsDHEPVFRQESYFAHLFGVKEPDCWAMI----ELPSGRSTLFIPKLAPEYAIWMGEIKAPSWFEQHYGVDAVLFVNELQAAVG 102
                 689*****************************************....67789*****************************************99876 PP

                 HH CS
       AMP_N 113 kl 114
                  +
  KOO23491.1 103 GA 104
                 55 PP

>> FAD_binding_3  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.8   0.0   2.4e-12   1.1e-08     266     345 ..     665     744 ..     541     748 .. 0.86

  Alignments for each domain:
  == domain 1  score: 34.8 bits;  conditional E-value: 2.4e-12
                    EEEEEEEEEEEEESSSEET.TEEE-GGGTEEE-STTSHHHHHHHHHHHHHHHHHHHHHTTSS-GGGGHHHHHHHHHHHHHH CS
  FAD_binding_3 266 eevsawtvaqrvaekyrkg.rvflaGDAaHihpPtgGqGlNtaiqDavnLawkLaavlkGeAkeelLdtYeeerravaqav 345
                       +++t +   +++++ g rv+  GDAaH + P++G G+N a++D+  L  +L++   G A+     t++++r+a +qa+
     KOO23491.1 665 FTRRSFTGQVVRVSRLNYGeRVCFLGDAAHSTIPSTGEGMNAALEDVRVLIDALGSSPGG-ASGPWFATFNQRRLADVQAI 744
                    45566666777788999999***********************************98775.55556789999998887776 PP

>> SE  Squalene epoxidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   0.0      0.87   3.9e+03       8      21 ..     544     557 ..     542     565 .. 0.74
   2 !   15.0   0.0   2.1e-06    0.0095      84     165 ..     640     719 ..     628     723 .. 0.72

  Alignments for each domain:
  == domain 1  score: -3.4 bits;  conditional E-value: 0.87
          SE   8 cDGifsklRkelsd 21 
                 + G++sklR ++  
  KOO23491.1 544 ATGCWSKLRTAVAA 557
                 57*******99874 PP

  == domain 2  score: 15.0 bits;  conditional E-value: 2.1e-06
          SE  84 elkeylkeevaPqlPkelrksfkkaleegklrsmpnkflpas.knekkGlillGDalnmRHPltggGmtvalnDivllskllk 165
                 +lk +++e++ P++    ++ + +   ++++     +++  s  n  + ++ lGDa     P tg Gm  al+D+ +l++ l 
  KOO23491.1 640 KLKAHMREHCPPAVSMIEEEEYARFFTRRSF---TGQVVRVSrLNYGERVCFLGDAAHSTIPSTGEGMNAALEDVRVLIDALG 719
                 5677777777777766666666666655444...3344443304445789****************************99886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (847 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       447  (0.0249317); expected 358.6 (0.02)
Passed bias filter:                      404  (0.0225333); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.66u 0.27s 00:00:00.93 Elapsed: 00:00:00.45
# Mc/sec: 5709.20
//
Query:       KOO23492.1  [L=126]
Description: hypothetical protein Ctob_002009 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
  ------ inclusion threshold ------
      0.012   15.3   2.1      0.013   15.1   2.1    1.1  1  SCHIP-1          Schwannomin-interacting protein 1
      0.056   13.6   0.8      0.056   13.6   0.8    2.1  2  Herpes_BLRF2     Herpesvirus BLRF2 protein
      0.072   13.2   3.7      0.087   12.9   3.7    1.2  1  Peptidase_S49_N  Peptidase family S49 N-terminal
       0.12   13.0   6.7        1.8    9.2   3.6    2.1  2  SlyX             SlyX
       0.14   12.0  11.0       0.61    9.9   0.1    2.3  2  DivIC            Septum formation initiator
       0.39   10.8   4.1       0.77    9.9   1.2    2.0  2  DUF2730          Protein of unknown function (DUF2730)
          2    7.5   8.5        2.4    7.2   8.5    1.0  1  Atg14            Vacuolar sorting 38 and autophagy-related su


Domain annotation for each model (and alignments):
>> SCHIP-1  Schwannomin-interacting protein 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.1   2.1   5.2e-06     0.013      67     137 ..      15      85 ..       2     105 .. 0.70

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 5.2e-06
     SCHIP-1  67 tetsldtPksdpsskqssslsdrkleeedseseddeadffarq..arLqeearvaLaqakelarmqveverqk 137
                  + +l+  +++p+ +++ s ++ + +        +e+ f ++q  +rL  ea+  La ake +r + ++e+ +
  KOO23492.1  15 LKATLKALTAPPAAPVAESTKKAESK--LKIIALQEKTFAEQQeiERLELEAKQLLARAKEHSRKKKDIEKEI 85 
                 44444555556778888877776644..3333445567777774459***********************986 PP

>> Herpes_BLRF2  Herpesvirus BLRF2 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.8   2.2e-05     0.056       7      43 ..       1      37 [.       1      52 [. 0.90
   2 ?    1.8   1.1       0.1   2.6e+02       9      30 ..      55      76 ..      50      93 .. 0.81

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 2.2e-05
  Herpes_BLRF2  7 laaelakLkvENkaLkkklkssvspkdeeLTaaekea 43
                  +a+ lakL+  N+aLk  lk  + p+  +  ++ k+a
    KOO23492.1  1 MADDLAKLQAKNEALKATLKALTAPPAAPVAESTKKA 37
                  7899**********************99999988876 PP

  == domain 2  score: 1.8 bits;  conditional E-value: 0.1
  Herpes_BLRF2  9 aelakLkvENkaLkkklkssvs 30
                  +e+ +L++E k+L  + k++  
    KOO23492.1 55 QEIERLELEAKQLLARAKEHSR 76
                  6899*******99888887765 PP

>> Peptidase_S49_N  Peptidase family S49 N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   3.7   3.4e-05     0.087      30      85 ..      30      85 ..       5     100 .. 0.87

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 3.4e-05
  Peptidase_S49_N 30 laakkkkekgelevtkLneeykelkeeleealldeeelkaaekkekkeekeekkae 85
                     +a+ +kk++ +l++  L+e+    ++e+e+  l+ ++l a++k++ +++k+ +k+ 
       KOO23492.1 30 VAESTKKAESKLKIIALQEKTFAEQQEIERLELEAKQLLARAKEHSRKKKDIEKEI 85
                     566778999***********************************999999888764 PP

>> SlyX  SlyX
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.3   0.1     0.012        31      31      55 ..       3      27 ..       1      39 [. 0.79
   2 ?    9.2   3.6   0.00071       1.8      19      55 ..      43      79 ..      33      90 .. 0.84

  Alignments for each domain:
  == domain 1  score: 5.3 bits;  conditional E-value: 0.012
                HHHHHHHHHHHHHHHT-XXXXXXXX CS
        SlyX 31 qqidrlqrqlrllaerlkeleessg 55
                +++++lq++ ++l+  lk+l +  +
  KOO23492.1  3 DDLAKLQAKNEALKATLKALTAPPA 27
                5789999999999999999988755 PP

  == domain 2  score: 9.2 bits;  conditional E-value: 0.00071
                HHHHHHHHHHHHHHHHHHHHHHHHHHHT-XXXXXXXX CS
        SlyX 19 ieeLndvvaeqqqqidrlqrqlrllaerlkeleessg 55
                i +L++  ++ qq+i+rl+ + ++l  r ke + +++
  KOO23492.1 43 IIALQEKTFAEQQEIERLELEAKQLLARAKEHSRKKK 79
                6789999999*******************99887755 PP

>> DivIC  Septum formation initiator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   0.1   0.00024      0.61      31      51 ..       3      23 ..       1      28 [. 0.83
   2 ?    3.4   7.6     0.025        63      23      74 ..      40      88 ..      33      93 .. 0.75

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.00024
                HHHHHHHHHHHHHHHHHCC-X CS
       DivIC 31 aelaklkaeneeLeaevkdLk 51
                ++lakl+a+ne+L+a +k L+
  KOO23492.1  3 DDLAKLQAKNEALKATLKALT 23
                578999999999999999985 PP

  == domain 2  score: 3.4 bits;  conditional E-value: 0.025
                HHHHHHHHHHHHHHHHHHHHHHHHHCC-XXXXXXXXXXXXXXXXXXXXXXXX CS
       DivIC 23 kqeiaalqaelaklkaeneeLeaevkdLksdedyieerARselglvkpgEtv 74
                k +i alq++  + ++e+e+Le e k+L    ++ +e  R++ +  k+ ++v
  KOO23492.1 40 KLKIIALQEKTFAEQQEIERLELEAKQLL---ARAKEHSRKKKDIEKEIDIV 88
                56788888888888899999999999884...77777777777776666665 PP

>> DUF2730  Protein of unknown function (DUF2730)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.8   0.1     0.099   2.5e+02      62      83 ..       2      23 ..       1      25 [. 0.76
   2 ?    9.9   1.2    0.0003      0.77      38      95 ..      30      87 ..      26      92 .. 0.92

  Alignments for each domain:
  == domain 1  score: 1.8 bits;  conditional E-value: 0.099
     DUF2730 62 akdlekLkllladlrgelkale 83
                a+dl+kL+ + + l++ lkal+
  KOO23492.1  2 ADDLAKLQAKNEALKATLKALT 23
                5788888888888888888775 PP

  == domain 2  score: 9.9 bits;  conditional E-value: 0.0003
     DUF2730 38 laekveendkrlteletkvenLPtakdlekLkllladlrgelkaleaevrqlshqvdL 95
                +ae+ ++ +++l+ +  + +++  ++++e+L+l+ ++l ++ k+ +++ + +++ +d+
  KOO23492.1 30 VAESTKKAESKLKIIALQEKTFAEQQEIERLELEAKQLLARAKEHSRKKKDIEKEIDI 87
                678899999***************************************9999999886 PP

>> Atg14  Vacuolar sorting 38 and autophagy-related subunit 14
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.2   8.5   0.00094       2.4      30     107 ..       4      84 ..       2      94 .. 0.72

  Alignments for each domain:
  == domain 1  score: 7.2 bits;  conditional E-value: 0.00094
       Atg14  30 rlaklksekeslkkkiekalegke...eaeqledkiknkkakleelksliadlrerlqelkdklsqlkkeieekkkklakl 107
                 +lakl++++e+lk  ++++ + +    + ++++++ k k  +l+e+    ++  erl++  ++l  + ke+  kkk ++k 
  KOO23492.1   4 DLAKLQAKNEALKATLKALTAPPAapvAESTKKAESKLKIIALQEKTFAEQQEIERLELEAKQLLARAKEHSRKKKDIEKE 84 
                 79***************9999999555444455555555555555555555555666666677777899999999999986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (126 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1848  (0.103073); expected 358.6 (0.02)
Passed bias filter:                      776  (0.0432818); expected 358.6 (0.02)
Passed Vit filter:                        84  (0.00468515); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.45u 0.25s 00:00:00.70 Elapsed: 00:00:00.40
# Mc/sec: 954.70
//
Query:       KOO23493.1  [L=68]
Description: hypothetical protein Ctob_002002 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (68 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       546  (0.0304535); expected 358.6 (0.02)
Passed bias filter:                      293  (0.0163422); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.24s 00:00:00.57 Elapsed: 00:00:00.39
# Mc/sec: 527.86
//
Query:       KOO23494.1  [L=4439]
Description: dynein beta ciliary-like protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   1.1e-104  350.0   0.0    2.2e-93  312.8   0.0    4.0  3  AAA_6            Hydrolytic ATP binding site of dynein motor 
      2e-98  330.1   2.5      2e-98  330.1   2.5    2.2  2  DHC_N2           Dynein heavy chain, N-terminal region 2
    7.6e-93  310.6   0.0    2.7e-92  308.8   0.0    1.9  2  AAA_8            P-loop containing dynein motor region D4
    2.3e-81  272.1   0.2    5.5e-81  270.9   0.2    1.7  1  AAA_9            ATP-binding dynein motor region
      1e-62  212.2   0.0    1.8e-62  211.4   0.0    1.4  1  Dynein_C         Dynein heavy chain C-terminal domain
    3.8e-58  196.0   0.8    6.1e-56  188.8   0.0    3.4  4  AAA_7            P-loop containing dynein motor region
    4.4e-58  197.0  13.2    8.7e-58  196.0  13.2    1.5  1  MT               Microtubule-binding stalk of dynein motor
    2.2e-40  138.2   0.0    1.2e-39  135.7   0.0    2.1  2  AAA_lid_11       Dynein heavy chain AAA lid domain
    2.8e-33  114.6   0.0    1.4e-30  105.8   0.0    3.0  2  Dynein_heavy     Dynein heavy chain region D6 P-loop domain
    2.4e-26   91.5  12.2    0.00011   22.4   0.0    8.1  7  Kelch_3          Galactose oxidase, central domain
    1.3e-25   89.1  14.6      1e-07   31.9   0.0    7.3  6  Kelch_4          Galactose oxidase, central domain
    2.2e-24   85.5   0.0    1.9e-23   82.6   0.0    2.5  2  AAA_lid_1        AAA+ lid domain
    8.8e-21   73.5   2.0     0.0018   18.2   0.0    7.8  7  Kelch_5          Kelch motif
    1.1e-18   67.6   0.4    2.6e-18   66.3   0.4    1.7  1  Dynein_AAA_lid   Dynein heavy chain AAA lid domain
    2.8e-17   63.0   0.2    1.1e-07   31.9   0.0    5.1  4  AAA_5            AAA domain (dynein-related subfamily)
    2.7e-12   47.4   0.0    6.3e-12   46.2   0.0    1.6  1  Filamin          Filamin/ABP280 repeat
    9.3e-12   44.8   5.9      0.018   15.3   0.1    6.5  5  Kelch_6          Kelch motif
    3.3e-11   42.6   7.0      0.018   14.6   0.8    5.8  5  Kelch_1          Kelch motif
    3.5e-10   39.4  13.3       0.27   11.3   0.1    7.6  7  Kelch_2          Kelch motif
    6.8e-07   29.3   0.1      2e-06   27.8   0.1    1.7  1  TIG              IPT/TIG domain
     0.0078   16.5   0.1        5.7    7.2   0.0    3.7  3  AAA_22           AAA domain
  ------ inclusion threshold ------
      0.019   15.4   0.8         10    6.5   0.0    4.3  3  AAA_16           AAA ATPase domain
       0.03   14.8   0.0        6.5    7.2   0.0    3.0  2  AAA              ATPase family associated with various cellul


Domain annotation for each model (and alignments):
>> AAA_6  Hydrolytic ATP binding site of dynein motor region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  312.8   0.0   2.8e-96   2.2e-93       1     233 [.    1625    1865 ..    1625    1871 .. 0.96
   2 !   30.9   0.0   1.7e-10   1.3e-07     230     327 .]    1892    2009 ..    1885    2009 .. 0.79
   3 ?   -1.0   0.0      0.88   6.9e+02     306     327 .]    2327    2348 ..    2302    2348 .. 0.77

  Alignments for each domain:
  == domain 1  score: 312.8 bits;  conditional E-value: 2.8e-96
       AAA_6    1 YgyeYlgnserLviTpltdrcyltltqAlklklggapaGpagtGKtEtvkdLakalakqvvvfncsdqldykslgkifkGlaqsGaWgCfdeFnrie 97  
                  Y++eYlg+ +rLviTpltdr+y+t tq+ +l lg+ap+GpagtGKtE++kdL+ +l+k+v+vfnc  ++dy +++ ifkGla+sG+WgCfdeFnr+ 
  KOO23494.1 1625 YSFEYLGCAGRLVITPLTDRIYITATQSAHLILGCAPQGPAGTGKTESTKDLSAQLGKTVYVFNCGPEMDYLTMNDIFKGLASSGSWGCFDEFNRLA 1721
                  99*********************************************************************************************** PP

       AAA_6   98 levLSvvaqqiktiqqalkekkkkfvfegkeiklnks.vgifitmnpgyagrteLPdnLkalfRpvammvPdlelIaeimLfseGfkeakelakklv 193 
                  +evLSv++ q k+ ++ +++  ++f f g e+ l+ + +  fitmnpgy gr+eLP++Lk+lfRpv++mvPd++lI+e mL+seG+++a el+kk++
  KOO23494.1 1722 AEVLSVCTIQWKCCLDGMRAGGNTFRFIGVELYLHYDgCMSFITMNPGYLGRQELPESLKVLFRPVTVMVPDFQLIMENMLMSEGYTTAAELGKKFY 1818
                  **********************************8653889******************************************************** PP

       AAA_6  194 tlykllseql.......skqdhydfglralksvlkaagelkreepee 233 
                  tlykl+ + l        kq hyd+glra+ svlk+ag++ r+e+++
  KOO23494.1 1819 TLYKLSGDLLggnpsppGKQLHYDWGLRAIGSVLKVAGAFLRAEKNM 1865
                  *********9555544449*********************9988775 PP

  == domain 2  score: 30.9 bits;  conditional E-value: 1.7e-10
       AAA_6  230 epeeseeelllralrdvnlpklvaeDvplfkglisdlFpgv..elpesdyeeleeaieevlkek..................klqleekfvekviql 306 
                   p+  e+ ll+ralrd+nl+k+  +D+ +f+gli+dlF +v   +p+ ++ e+e+ i+++++e                    lq+e  f+  v++l
  KOO23494.1 1892 FPDVYEQGLLMRALRDFNLSKIAGDDAIVFMGLIKDLFGDVfdLMPRMRDYEFEKLIADTATELdtsgrlggggvmgsrfppMLQPEAYFIANVVDL 1988
                  577889**********************************97667888888999988887765322222222222222232247899999999999* PP

       AAA_6  307 yetlkvrhgvmlvGetgsgKt 327 
                   ++l +rh+v+++G +gs K+
  KOO23494.1 1989 QDLLFLRHSVFCIGLSGSNKS 2009
                  999999****99999999997 PP

  == domain 3  score: -1.0 bits;  conditional E-value: 0.88
       AAA_6  306 lyetlkvrhgvmlvGetgsgKt 327 
                  l ++l  + g+ml+G++g+gKt
  KOO23494.1 2327 LDQLLPNKFGMMLIGSAGCGKT 2348
                  56677788999********998 PP

>> DHC_N2  Dynein heavy chain, N-terminal region 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.6       2.5   1.9e+03     229     298 ..     935    1000 ..     863    1028 .. 0.58
   2 !  330.1   2.5  2.6e-101     2e-98       3     396 ..    1058    1469 ..    1056    1470 .. 0.96

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 2.5
                  HHHHHHT.THHHHHHTHHHHHHHHHHHHHHHHHHHHHHTTSGGGG...STTHHHHHHHHHHHHHHHHHHH CS
      DHC_N2  229 lyLepifssedirkqlpeeakrFksvdkewkkimkevskdpnvleatskpgllekleelneqlekiqksL 298 
                  + L+++ ++  i+k+l + +++F+  +k    + k+++     l+  + +++++++ +l e+l+k +k+L
  KOO23494.1  935 MILHNMGKTAPIQKKLDSVQEEFNVASKAAPIVRKQIKP----LQDDEAKNVMNEIAKLEEELDKHHKKL 1000
                  444444433334444444444444444433311111111....111122234444444444444444433 PP

  == domain 2  score: 330.1 bits;  conditional E-value: 2.6e-101
                  XXXXXXXXXXXXXXXXXXXXXXXXXX.....XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
      DHC_N2    3 eikkelellkklwdlvsewqekleewkktpfkeldveeleeevkellkklkklpkalkewevakelkekieefkevlplieelrnpalrerHwkels 99  
                  +++ +l + k+lwdl + ++ +leewkk  +++++  +leee+k+++k +k ++ka+++w+v+  +++ i++f+ ++p+i+el++p++r+rHw++l+
  KOO23494.1 1058 DMRGDLLKCKSLWDLEQMVNFQLEEWKKLLWDQINGGALEEETKTFQKIVKGMDKAVRNWDVYLGIDAVIKNFLVSVPCISELKSPSMRQRHWTRLM 1154
                  678889999**************************************************************************************** PP

                  XXX...X..XXXXXXX.XXXXXXXXXXX..XXXXXXXXXXXXXX-HHHHHHHHHHHHHHTS---EEEE-SSS....TEEE..THHHHHHHHHHHHHH CS
      DHC_N2  100 ellgv.i..kdpdseesltlgdllelgl..leeeieeisekAtkEaslekalkkieeewkelefelteykdsg...vfilkgvdeiielledhivkl 188 
                  + +g+ i  +d + +  + l+d+l l+l  + +++ e++++A+kE ++e++l k+ e+w++++f l+++  sg   v++++  +e +e+le++++ +
  KOO23494.1 1155 QVTGKqIavTDGKFDPAFCLADMLRLELykFVDDVGEVVDQANKEDKMEQTLGKLAETWTTVKFGLETKMASGnveVHLINLAEENFEMLEENQLVV 1251
                  ****9736766777788***********655*************************************88887799999988*************** PP

                  HHTCSSSTT..THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT.THH.HHHHTHHHHHHHHHHHHHHHHHHHHHHTTSGGGG...STTHHHHH CS
      DHC_N2  189 qsmksspyvkpfeeeveewekklsrlqeildewlkvQrkWlyLepifssed.irkqlpeeakrFksvdkewkkimkevskdpnvleatskpgllekl 284 
                  q m++s+y++ fe+ v  w+kkls ++++l ++ ++QrkW yLe +f ++d ++k+lp +a+rF +vd  +k+++ + +kdpn++  ++k+gl+++l
  KOO23494.1 1252 QGMMASKYLATFEALVVGWQKKLSAVSDVLGQMSETQRKWAYLETLFIGSDeVKKELPMDAERFANVDVLFKELLLHFKKDPNCVISCAKEGLMKQL 1348
                  *********88**************************************755*******************************8888999******* PP

                  HHHHHHHHHHHHHHHHHHHHHHHHSTTHHHH-HHHHHHHHHTTTTSGGGHHHHHHHHSSEEEESE.........EEEEEETTS-EEEEE.......E CS
      DHC_N2  285 eelneqlekiqksLneyLekkRlafpRFyFlsddeLleilsqskdpsavqphlkkcFegiaslefee....kkeitgmiskegEkvelse.....ar 372 
                  e +   le ++k+L+++L++kR++fpRFyF s   Ll+ils+++ p +v++ ++ + +g+a + +e     +++++++ s+egEk ++++     ++
  KOO23494.1 1349 EGVAADLELCEKALSDFLDAKRAIFPRFYFASQVMLLDILSNGNRPWVVMKNINAICQGVAGVALEGtpgeERSVISFTSNEGEKCKMNNlgtltLN 1445
                  ***************************************************************99889999*****************98999**** PP

                  .EEEHHHHHHHHHHHHHHHHHHHH CS
      DHC_N2  373 gnveeWLneleeemkktlkellke 396 
                  g+ve+++n+l ++m++ ++ +l +
  KOO23494.1 1446 GKVENYFNQLIDKMRNEMRAQLGK 1469
                  *******************99866 PP

>> AAA_8  P-loop containing dynein motor region D4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.0       2.2   1.7e+03      27      41 ..    2337    2351 ..    2331    2411 .. 0.69
   2 !  308.8   0.0   3.5e-95   2.7e-92       1     260 []    2654    2913 ..    2654    2913 .. 1.00

  Alignments for each domain:
  == domain 1  score: -1.9 bits;  conditional E-value: 2.2
       AAA_8   27 aLlvGvgGsGrqslt 41  
                  ++l+G +G+G+  ++
  KOO23494.1 2337 MMLIGSAGCGKTAMI 2351
                  79*********9876 PP

  == domain 2  score: 308.8 bits;  conditional E-value: 3.5e-95
       AAA_8    1 ldLvlfedaiehlarilRvlrqprghaLlvGvgGsGrqsltkLAafiaelelfqievtkkykekefredlkkllkkagikqkevvfllsdnqiiees 97  
                  ++Lvlfeda++h++ri+R+++   ghaL+vGvgG G+qsl++LA+f+++++ fq+ +t  y++++ + dl++++kk g+k++ + f+++d+qi++e 
  KOO23494.1 2654 MNLVLFEDAMRHVCRISRIIESSGGHALMVGVGGMGKQSLARLATFVNGFSAFQVVITARYSVNDLKADLQTMYKKSGLKGEGISFIFTDQQIADER 2750
                  9************************************************************************************************ PP

       AAA_8   98 fledinnlLntGevpnLfskeekeeiieelrkeakkqgvedskesllnffikrvrenLhivlcmspvgeafrsrlrkfpsLvncttidwfqeWPeea 194 
                  fl  +n+lL++G++p Lf  e++++ii+++r  +k++g  d+++++++ fi+ vr+nLh++lc+sp+ge ++ r r+fp+Lvnc++idwfq+WPeea
  KOO23494.1 2751 FLVFMNDLLSSGNIPGLFPAEDMDDIINNMRPVVKRAGLPDTRDNCWDAFINTVRDNLHVILCFSPIGEPIKVRTRRFPALVNCVVIDWFQPWPEEA 2847
                  ************************************************************************************************* PP

       AAA_8  195 LleVaekvleeeeeieeelkesivkvlvevhssveelsekfleelkrkiyvtpksylellktykkl 260 
                  L++V++k+l e+   ++e++++i +++ + +  v+++se + ++ +r +y+tpks+lel+ +yk++
  KOO23494.1 2848 LNSVSKKFLAEVDLGSDESRNNIQNFMPYSFIAVNKISELYESQERRFNYTTPKSFLELIALYKSM 2913
                  ****************************************************************87 PP

>> AAA_9  ATP-binding dynein motor region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  270.9   0.2   7.1e-84   5.5e-81       3     220 .]    3308    3527 ..    3306    3527 .. 0.98

  Alignments for each domain:
  == domain 1  score: 270.9 bits;  conditional E-value: 7.1e-84
                  HH.HT--STHHHHHHHHHHH..SSEEEEESSSTTHHHHHHH.......HEESTTSTTHHHHHHHHHHTTSEEEESTT.SSHHSTTHHHHTTCCEE.. CS
       AAA_9    3 WnlqgLPsDelsieNaiivtkserwPlliDPqgqankwiknk.ekeklkviklsdkkflktLenairfGkplliedvgeeldpiLepvLekeiikkg 98  
                  Wn+++LP+D +s+eN++ivt+++rwPl+iDPq q++kwik++ ek+ lkv++l +k++++ L ++i+ G+p++ie+++  +d++L+pv+ +++ik+g
  KOO23494.1 3308 WNNEQLPADPVSTENGAIVTSCARWPLMIDPQLQGIKWIKKHeEKRGLKVVRLGQKTIMTVLGSCIESGSPCMIENIQLVVDAVLSPVIGRQTIKRG 3404
                  ******************************************78888************************************************97 PP

                  .CEEEESSSE.EE--SSCEEEEEESSTTSHHHHHHHHHSEEEE---SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
       AAA_9   99 .rkliklgdkeieysenFrLylttklsnphyspeiaakvtlinFtvteeGLedqlLaevvkkerpeleekkeeliqeeaenkkqlkeledklLeeLs 194 
                   ++++klgdke++ys+nF+Lyl+tklsnphy+pei+a++tl+nF+vte+GLedqlL+ +vk erp+l + k +li +++ +k++l ele+ +L++L+
  KOO23494.1 3405 rNQIVKLGDKEVDYSPNFKLYLQTKLSNPHYPPEIQAETTLVNFMVTEDGLEDQLLDVAVKLERPDLAQLKADLIAQQNGFKIKLSELEAGILKQLA 3501
                  799********************************************************************************************** PP

                  HSSSSSSTHHHHHHHHHHHHHHHHHH CS
       AAA_9  195 eaegniLedeelietLeksKktaeei 220 
                  eaeg++ e+ elie+Le+sK+t+ e+
  KOO23494.1 3502 EAEGDVTENIELIENLEDSKATSIEV 3527
                  **********************9886 PP

>> Dynein_C  Dynein heavy chain C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  211.4   0.0   2.3e-65   1.8e-62       4     306 ..    4116    4435 ..    4112    4436 .. 0.84

  Alignments for each domain:
  == domain 1  score: 211.4 bits;  conditional E-value: 2.3e-65
                  HHHHHHHHHHCCCTTT-------..CCH-----------......---..----..........-HHHHHHHHHHHHHHHHHHHHHHHHHHHHC--- CS
    Dynein_C    4 teellstllslqpressssgsggssreekvlelaadile......klpelfdleeaekkpteyeeplntvllqElerfnkLleeirrsLkelqkaik 94  
                  +++l+ t+ls+      ++g+gg s+eekv +l ++ile       l e+f++ +  +  +++ +p+ +++l Eler+nk+l+ +r++L el ++++
  KOO23494.1 4116 CDNLFFTILSISGG---GGGGGGASKEEKVGALQTSILEgsgaitALREDFQMIAIRMLIKDKGSPYVVFVLGELERMNKILTAMRTQLVELGLGLA 4209
                  56677778877444...4556788899************6665555555666665444489999********************************* PP

                  ------HHHHHHHHHHHHTS--GGG.--..--.....-SS--HHHHHHHHHHHHHHHHHHH.---...........B-GGGSS-HHHHHHHHHHHHH CS
    Dynein_C   95 GevvmseeleelansllngkvPesWakk..sy.....pslkplgsWvrdLleRvkqlqkwl.eee......gkPkvfwLsgfffPqaFLtavlqnya 177 
                  G +++s+++++l+++++ + vP+ W k+  ++       +k+l+sW++dL  R+ ql+ w+  e+      ++P+++wL+g f+  +FLta+ q ++
  KOO23494.1 4210 GALNISDAMDALITAMFMNLVPPNWLKTcgQIgptgsYNKKSLSSWYADLTLRWLQLEIWSsAERcsgpleEPPPSVWLGGCFNAMGFLTAMTQVTS 4306
                  *************************74433223333356777*******************5555899995569*********************** PP

                  HHTT-----EE--EE---...........................-EEE-SEEEESSEE..ETTCEE-SS...SEEEES-EEEE-E----TS..... CS
    Dynein_C  178 rknkipideltfefevtk........kekeeea......eeepedGvyihGLfleGarwdkkegvLaesepkelfselPvihlkpveakkkekkkk. 259 
                  r+n++++d + ++ ev++        k     +      e++pedGv++hG f+eGarwd   +  ++s pk+l+  +Pvih++ +eak+    +  
  KOO23494.1 4307 RANGFSLDAMRVHSEVLTaslpmggwK-----VessagiERQPEDGVFCHGYFMEGARWDVALNSVTDSFPKDLYPWMPVIHFTGIEAKNVI--TAg 4396
                  *****************8666665552.....0445567**********************************************9866662..222 PP

                  .EEEEEESSTT--SE.........EEEEEE.....-BHHHTTT-EEE CS
    Dynein_C  260 kyecPvYktseRrgvlstthstnfvfsvdLptkkpeehwilrgvall 306 
                   y cP+Y+t+ R         ++ ++ + L+t+ ++++wil+ v++l
  KOO23494.1 4397 RYMCPMYTTTIRG--------PTHILPAPLRTNVDPNKWILASVCML 4435
                  4***********8........457*********************98 PP

>> AAA_7  P-loop containing dynein motor region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.2   0.0      0.07        55      39      65 ..    1662    1688 ..    1641    1705 .. 0.87
   2 ?   -2.0   0.0       2.8   2.2e+03      28      54 ..    1990    2016 ..    1985    2023 .. 0.83
   3 !  188.8   0.0   7.9e-59   6.1e-56       5     181 .]    2306    2480 ..    2303    2480 .. 0.98
   4 ?   -2.2   0.0       3.2   2.5e+03      30      52 ..    2674    2696 ..    2649    2730 .. 0.62

  Alignments for each domain:
  == domain 1  score: 3.2 bits;  conditional E-value: 0.07
       AAA_7   39 vGptGtGKtviikdllkkldkekylsl 65  
                   Gp+GtGKt  +kdl  +l k+ y+++
  KOO23494.1 1662 QGPAGTGKTESTKDLSAQLGKTVYVFN 1688
                  59*****************98877765 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 2.8
       AAA_7   28 lllknkkpvllvGptGtGKtviikdll 54  
                   ll  +++v+++G +G+ K++  ++l 
  KOO23494.1 1990 DLLFLRHSVFCIGLSGSNKSMSWQTLA 2016
                  56667899*************998875 PP

  == domain 3  score: 188.8 bits;  conditional E-value: 7.9e-59
       AAA_7    5 eeakfseilVptvdtvrysyllelllknkkpvllvGptGtGKtviikdllkkldkekylsltinfsaqtsanqlqdiiesklekrrkgvygPpggkk 101 
                  +++k+s ++Vpt++tv +s++l++ll nk  ++l+G++G+GKt++i+  l++l+ +++ sltin+s+ t+an + ++ie++lek++++++gPpg+kk
  KOO23494.1 2306 ATTKMSVVTVPTMETVAISFWLDQLLPNKFGMMLIGSAGCGKTAMINGKLRSLP-DEFGSLTINISYFTNANLFSKVIEAPLEKKAGKNFGPPGNKK 2401
                  5789999***********************************************.****************************************** PP

       AAA_7  102 lvvFvDDlnmpakekygaqppiellRqlldyggwYdrkklefkeikdvqlvaamgppgggrneitpRllrhfnvlaitep 181 
                  l++FvDDlnm a ++yg+ + i l+Rq+  yg++Yd++kl+ k + ++q+++am+p++g+ + i+pRl+r f+++a+ +p
  KOO23494.1 2402 LIYFVDDLNMAALDNYGTASNISLMRQHAGYGHIYDLNKLTEKVLLNTQYLSAMNPTAGS-FVINPRLQRLFATYAVGFP 2480
                  ************************************************************.**************99775 PP

  == domain 4  score: -2.2 bits;  conditional E-value: 3.2
       AAA_7   30 lknkkpvllvGptGtGKtviikd 52  
                   +++ + l+vG  G GK ++++ 
  KOO23494.1 2674 ESSGGHALMVGVGGMGKQSLARL 2696
                  3467899**********988764 PP

>> MT  Microtubule-binding stalk of dynein motor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  196.0  13.2   1.1e-60   8.7e-58       2     344 .]    2927    3275 ..    2926    3275 .. 0.94

  Alignments for each domain:
  == domain 1  score: 196.0 bits;  conditional E-value: 1.1e-60
          MT    2 rlengllklqstaaqvddlkaklaaqevelkqknedadkliqvvgvetekvskekaiadeeekkvavinkevkkkqkdceedlakaepallaaqeal 98  
                  rl ng++kl+staa v  l   l ++ ve++ k+ ++d +i  +  e  k   e + a++     ++ +kev + +   e  la aepal+aa +al
  KOO23494.1 2927 RLTNGVIKLESTAASVAVLEENLKVKAVEVEAKKAECDAMIPKLEEEKAKAGEEASKANKIASAATIKEKEVLEMKAGIEVKLAAAEPALVAAAAAL 3023
                  99*********************************************************************************************** PP

          MT   99 ntlnktnltelksfgsppdavvnvaaavmvllaprgkvpk..drswkaakivmakvdafldslinf....dkenihenclkaikeylndpefepefi 189 
                  + ln ++l elk++  pp+ v +v+aa + ll  +    k  d swkaa  +m+    fl ++  f    d  +++++    i++ l+  +f+ ++ 
  KOO23494.1 3024 EGLNVKDLGELKALKKPPSGVEDVTAACICLLQTKDMPFKkiDTSWKAAVAMMSPPPQFLATMLGFkariDSGELPKSNFANIQDLLKLEHFNVDIQ 3120
                  ****************************9999877654333599***************9999877333366789999999**************** PP

          MT  190 kskslaaaglcswvinivrfyevycdvepkrqalekanaelaaaqe.klaaikakiaelnanlaeltaafekatadklkcqqeaeatartislanrl 285 
                  + ks aaagl  ++ini  + ++  +vep r    +a+ael +a   k aa+ ak a  +a +ael a+f  a a+k     +ae  +r + la+rl
  KOO23494.1 3121 RKKSNAAAGLTDFIININVYNDINENVEPMRLQALQATAELDTAVAaKNAALAAK-ATAEATVAELEAQFAAAVAEKEAVLADAERCERKLGLAQRL 3216
                  *******************************88888999*988765166666665.8899************************************* PP

          MT  286 vgglasenvrwaeavenfksqektlcgdvllitafvsyvgfftkkyrqelldrlwlpyl 344 
                  +  l se  rw + + +f ++ + l gdvll +afvsy+g+f k++r +l+++++lpyl
  KOO23494.1 3217 MAALGSEGARWKQGIIDFGIELNILVGDVLLASAFVSYIGCFNKRFRISLMQQTFLPYL 3275
                  **********************************************************7 PP

>> AAA_lid_11  Dynein heavy chain AAA lid domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.0       1.8   1.4e+03      45     107 ..    2524    2586 ..    2485    2605 .. 0.74
   2 !  135.7   0.0   1.6e-42   1.2e-39       5     164 .]    3948    4107 ..    3944    4107 .. 0.85

  Alignments for each domain:
  == domain 1  score: -1.1 bits;  conditional E-value: 1.8
                  GGGTTTS-SS-----HHHHHHHHHHHHHHHHHCSSGGS-HHHHHHHHHHTTTSTT--SHHHHH CS
  AAA_lid_11   45 rkFgplGwnipYeFnesdleisvevlkmyldeyeekevpwealkyligeinYGGrvtDdwDrr 107 
                  r+F +   n+ YeFn   +   ++ + m    + ++ ++  +l    +e +YG r +   D +
  KOO23494.1 2524 RTFRKTATNFHYEFNVRHMAGVFQGMLMGQAGQVTEPLKLAQLWLHESERVYGDRLVSTSDLK 2586
                  78999999*******999888877777666555557888888888888999999988877765 PP

  == domain 2  score: 135.7 bits;  conditional E-value: 1.6e-42
                  HHHHCT-HHHHT............HHHHHHHHHHHHHHHHHGGGGTTTS-SS-----HHHHHHHHHHHHHHHHHCSSGGS-HHHHHHHHHHTTTSTT CS
  AAA_lid_11    5 lraysnesekideeffee..keeefkkllfsLcffHavvqeRrkFgplGwnipYeFnesdleisvevlkmyldeyeekevpwealkyligeinYGGr 99  
                  + ++++    +++  f++  k  + + +lf+L+ffHa+v+ RrkF ++G++ +Y Fn++dl ++  +l++yl+ +e   +pw +++yl+ge++YGG+
  KOO23494.1 3948 RLSWAM----FSQADFDKstKPLAHRPMLFALTFFHALVLGRRKFSTMGFSRSYAFNSGDLLVCGAILQNYLEANE-IATPWADVRYLVGEVMYGGH 4039
                  555543....334445544577889***********************************************8887.899***************** PP

                  --SHHHHHHHHHHHHHHSSGGGGSTT...-..T...E---SSHHHHHHHHCTS-SS--CCCCTS-TTH CS
  AAA_lid_11  100 vtDdwDrrllktyleeffseevleeeyk.s..geykipeeksleeyleyieslpladspevfglhena 164 
                  +tD +Drr+  tyl  ++++++++e++      + +   e+++e+y+ y+e+    +sp +fg+h+na
  KOO23494.1 4040 ITDPYDRRIAVTYLAVLLNPNLVDEHTDfMlaPGLRPLLEGEYEDYKIYVEEASPPESPLLFGMHPNA 4107
                  ***********************876442122334444559**********9999************8 PP

>> Dynein_heavy  Dynein heavy chain region D6 P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.3   0.0     0.026        20      28     104 ..    3352    3439 ..    3334    3448 .. 0.64
   2 !  105.8   0.0   1.8e-33   1.4e-30       3     118 ..    3817    3942 ..    3815    3943 .. 0.94

  Alignments for each domain:
  == domain 1  score: 5.3 bits;  conditional E-value: 0.026
                    T--EEEEETTSHHHHHHHHHHHHHHHHT-EEEEE-GGG-CCC..HHHHHHH....................HHTT-EEEEEEES-T.TS-HHH CS
  Dynein_heavy   28 kklvksvslGqgqeeeaekalekaakegsWvlLqNchlapsw..lkeLeki..leel...........eeklhssfRlwltsepsp.kfPisl 104 
                    k+ +k v lGq+   +++ +l +++++gs  +++N++l+++    + + +                  e + +++f+l+l ++ s+ + P ++
    KOO23494.1 3352 KRGLKVVRLGQK---TIMTVLGSCIESGSPCMIENIQLVVDAvlSPVIGRQtiK--RgrnqivklgdkEVDYSPNFKLYLQTKLSNpHYPPEI 3439
                    444466777765...57999*******************654322244333430..134444555665666778******6665542677665 PP

  == domain 2  score: 105.8 bits;  conditional E-value: 1.8e-33
                    TS-EEEEE-TT--THHHHHHHHHHT......T--EEEEETTSHHHHHHHHHHHHHHHHT-EEEEE-GGG-CCCHHHHHHH.......HHTT-EEE CS
  Dynein_heavy    3 ttPvlfilspgadptesleklakkl......kklvksvslGqgqeeeaekalekaakegsWvlLqNchlapswlkeLekileeleeklhssfRlw 91  
                    +tP++f+l pg+dp +++e+l+kkl      +++  s+s+Gqgqe++ e++l++ ++eg+W +LqN+hl++ wl+ Le+ le ++e  h++fR++
    KOO23494.1 3817 QTPLFFVLFPGVDPGDEIEALGKKLgytdlqGNF-VSISMGQGQEKNGENVLDRFTREGGWAFLQNVHLMQGWLPMLERKLEIAAEIGHENFRCF 3910
                    79*********************99999995555.9**********************************************999999******* PP

                    EEEES-T.....TS-HHHHHTSEEEEE---SS CS
  Dynein_heavy   92 ltsepsp.....kfPislLqssikvtnepPkg 118 
                    +t+ep        +P++++qs+ikv+nepP+ 
    KOO23494.1 3911 VTAEPPGlptfmLIPEGIMQSAIKVANEPPTD 3942
                    *****988888669****************86 PP

>> Kelch_3  Galactose oxidase, central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.2   0.0    0.0084       6.5      31      48 ..      12      32 ..       5      32 .. 0.81
   2 !   21.1   0.1   3.6e-07   0.00028       1      47 [.      34      89 ..      34      91 .. 0.92
   3 !   22.4   0.0   1.4e-07   0.00011       1      47 [.      94     141 ..      94     143 .. 0.89
   4 !   17.1   0.2   6.5e-06    0.0051       3      47 ..     160     210 ..     158     212 .. 0.81
   5 ?    1.1   0.1      0.67   5.3e+02      16      35 ..     232     251 ..     215     264 .. 0.72
   6 !    9.7   0.0    0.0014       1.1       2      41 ..     284     326 ..     283     327 .. 0.90
   7 !   13.1   0.0   0.00011     0.089       2      35 ..     773     814 ..     772     823 .. 0.75

  Alignments for each domain:
  == domain 1  score: 7.2 bits;  conditional E-value: 0.0084
     Kelch_3 31 Waei...aslppaRaghaata 48
                W+ +   ++ p+aR+gh++t+
  KOO23494.1 12 WQPVttkGDGPSARSGHSITV 32
                6644446************96 PP

  == domain 2  score: 21.1 bits;  conditional E-value: 3.6e-07
     Kelch_3  1 gdrlyifGGlgd..dgqdrl..ndvyvydldtn..tWaei...aslppaRaghaat 47
                g+++ ifGG+g   dg+++   n+++++ l+ +  +W+ +   ++ p++R  h+at
  KOO23494.1 34 GNKAIIFGGCGVakDGNTVQifNETWELGLGGDvySWTLVeamGDEPTPRWRHTAT 89
                799***********99999999********99999***77779*******999988 PP

  == domain 3  score: 22.4 bits;  conditional E-value: 1.4e-07
     Kelch_3   1 gdrlyifGGlgddgqdrlndvyvydldtntWa..eiaslpp.aRaghaat 47 
                 +d++++fGGl+   + r nd yv+++++ +W   e+a +pp +R++h+a 
  KOO23494.1  94 DDTVLVFGGLN--KGMRFNDSYVLSVAKMEWNikECAGTPPcPRSHHTAN 141
                 5899*******..****************6666699888888******96 PP

  == domain 4  score: 17.1 bits;  conditional E-value: 6.5e-06
     Kelch_3   3 rlyifGGlgd..dgqdrlndvyvydldtntWaei....aslppaRaghaat 47 
                 ++ ++GG+g+  +++d++ dv+ + ld++tW ++    ++ p +R+ h+++
  KOO23494.1 160 KVAVVGGYGGpgTTRDFYMDVHFLELDSWTWVKVgntrGPAPKPRSDHCTC 210
                 68999****976779999**************9955454456699988888 PP

  == domain 5  score: 1.1 bits;  conditional E-value: 0.67
     Kelch_3  16 drlndvyvydldtntWaeia 35 
                  ++ dv+ yd ++n+W   +
  KOO23494.1 232 GFYDDVHCYDYVKNEWVLPD 251
                 5679************9654 PP

  == domain 6  score: 9.7 bits;  conditional E-value: 0.0014
     Kelch_3   2 drlyifGGlgddgqdrlndvyvydldtntWaei....aslppaR 41 
                 drl++fGG + + ++++n v   d  + +W++     +++p++R
  KOO23494.1 284 DRLFVFGGQT-SPREFSNLVSCMDSTNMEWDTKftlaGTSPSPR 326
                 89********.77999999999999999***778889******9 PP

  == domain 7  score: 13.1 bits;  conditional E-value: 0.00011
     Kelch_3   2 drlyifGGlgd.dgqdrl..ndvyvydldtntWaei.....a 35 
                 d+lyi+GG +d +  d++   d y++d  +  W++i     +
  KOO23494.1 773 DKLYIYGGSTDpTAKDVTyyDDIYSLDMKAKLWTRIyrcgiD 814
                 89*********655444455**************98766653 PP

>> Kelch_4  Galactose oxidase, central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.2   0.2   8.9e-05      0.07       1      32 [.      24      59 ..      24      73 .. 0.91
   2 !   31.9   0.0   1.3e-10     1e-07       1      48 [.      82     132 ..      82     133 .. 0.89
   3 !    9.0   0.4    0.0017       1.3      14      47 ..     160     200 ..     153     204 .. 0.86
   4 !   10.2   0.3   0.00072      0.56      14      41 ..     215     247 ..     203     249 .. 0.80
   5 !    8.9   0.0    0.0019       1.5       4      24 ..     272     295 ..     271     307 .. 0.82
   6 !   19.1   0.1   1.2e-06   0.00096      12      44 ..     772     808 ..     768     817 .. 0.92

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 8.9e-05
     Kelch_4  1 pRaghsatsipdgtiylfGGrgedg.....tllndly 32
                +R ghs+t+ + ++ ++fGG+g        +++n+++
  KOO23494.1 24 ARSGHSITVSG-NKAIIFGGCGVAKdgntvQIFNETW 59
                7*********6.9*********976899999999999 PP

  == domain 2  score: 31.9 bits;  conditional E-value: 1.3e-10
     Kelch_4   1 pRaghsatsi.pdgtiylfGGrgedgtllndlylldlstntW...rrlgslP 48 
                 pR+ h+at + +d+t+ +fGG +    ++nd y+l+++  +W   +  g++P
  KOO23494.1  82 PRWRHTATLLpGDDTVLVFGGLNKG-MRFNDSYVLSVAKMEWnikECAGTPP 132
                 9*********7779**********7.5***************8855557777 PP

  == domain 3  score: 9.0 bits;  conditional E-value: 0.0017
     Kelch_4  14 tiylfGGrgedg...tllndlylldlstntWrrl....gsl 47 
                 +++++GG+g++g    ++ d+++l l + tW ++    g++
  KOO23494.1 160 KVAVVGGYGGPGttrDFYMDVHFLELDSWTWVKVgntrGPA 200
                 79*****************************8885655444 PP

  == domain 4  score: 10.2 bits;  conditional E-value: 0.00072
     Kelch_4  14 tiylfGGrgedg.....tllndlylldlstntW 41 
                  +++ GGrg+       ++++d++ +d   n+W
  KOO23494.1 215 ILIVSGGRGWSEgktdpGFYDDVHCYDYVKNEW 247
                 789999***996799****************** PP

  == domain 5  score: 8.9 bits;  conditional E-value: 0.0019
     Kelch_4   4 ghsatsi...pdgtiylfGGrged 24 
                 +h+a+ i   p++++++fGG++++
  KOO23494.1 272 NHMAINIesvPSDRLFVFGGQTSP 295
                 677777777799**********98 PP

  == domain 6  score: 19.1 bits;  conditional E-value: 1.2e-06
     Kelch_4  12 dgtiylfGGrgedg....tllndlylldlstntWrrl 44 
                 ++++y++GG ++++    t ++d+y ld + + W+r+
  KOO23494.1 772 KDKLYIYGGSTDPTakdvTYYDDIYSLDMKAKLWTRI 808
                 69*********************************98 PP

>> AAA_lid_1  AAA+ lid domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.0       2.7   2.1e+03      11      66 ..    1515    1571 ..    1509    1596 .. 0.67
   2 !   82.6   0.0   2.4e-26   1.9e-23       1      96 [.    2511    2606 ..    2511    2610 .. 0.97

  Alignments for each domain:
  == domain 1  score: -1.0 bits;  conditional E-value: 2.7
   AAA_lid_1   11 kiaatflptaikfhyvfnlrdlsnifqgllfssaevl.kapldlirlylheservyg 66  
                  k+     p a+k +y f+l  ls ++  +     ++  +a++++i l  h  +  y+
  KOO23494.1 1515 KLMDGSDPGALKTYYAFQLEMLSGVITMVQGELQKLHrRAAMNVITLEAHSRDINYK 1571
                  555566799*************99875443333333214667777777766666665 PP

  == domain 2  score: 82.6 bits;  conditional E-value: 2.4e-26
   AAA_lid_1    1 lvaaalalhkkiaatflptaikfhyvfnlrdlsnifqgllfssaevlkapldlirlylheservygdkmveekdlellekvtlevakkffddvede 96  
                  lv+aal+lhk +  tf  ta  fhy fn+r ++ +fqg+l+  a  +  pl l +l+lheservygd++v   dl++++    e a kff+++  +
  KOO23494.1 2511 LVQAALQLHKAVMRTFRKTATNFHYEFNVRHMAGVFQGMLMGQAGQVTEPLKLAQLWLHESERVYGDRLVSTSDLKKYQDCAKEQATKFFKELSGP 2606
                  699****************************************************************************************99766 PP

>> Kelch_5  Kelch motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.8   0.1   0.00023      0.18       2      37 ..      22      61 ..      21      69 .. 0.88
   2 !   18.2   0.0   2.3e-06    0.0018       2      39 ..      80     117 ..      79     119 .. 0.90
   3 ?    2.6   0.0      0.18   1.4e+02       2      41 ..     132     187 ..     131     188 .. 0.77
   4 !    8.0   0.1    0.0038         3       2      38 ..     201     241 ..     200     241 .. 0.90
   5 ?    6.4   0.0     0.012       9.3       1      27 [.     266     297 ..     266     301 .. 0.77
   6 ?    4.9   0.0     0.034        27       2      39 ..     323     359 ..     322     361 .. 0.79
   7 !   12.4   0.0   0.00016      0.12       2      40 ..     760     801 ..     759     803 .. 0.82

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 0.00023
     Kelch_5  2 PppRaghcavtvsekiYvyGGkv....grdgsvsddvyvL 37
                P++R+gh++ + ++k +++GG +    g++ +++++ + L
  KOO23494.1 22 PSARSGHSITVSGNKAIIFGGCGvakdGNTVQIFNETWEL 61
                99*******************997554499999***9987 PP

  == domain 2  score: 18.2 bits;  conditional E-value: 2.3e-06
     Kelch_5   2 PppRaghcavtv..sekiYvyGGkvgrdgsv.sddvyvLdl 39 
                 P+pR++h a  +  ++ ++v+GG +   ++  ++d yvL++
  KOO23494.1  80 PTPRWRHTATLLpgDDTVLVFGGLN---KGMrFNDSYVLSV 117
                 9***********666**********...6666*******98 PP

  == domain 3  score: 2.6 bits;  conditional E-value: 0.18
     Kelch_5   2 PppRaghcavtv...........s...ekiYvyGGkvg..rdgsvsddvyvLdlps 41 
                 P+pR++h a  v           +   +k+ v GG++g  ++ +++ dv+ L l s
  KOO23494.1 132 PCPRSHHTANLVtfpatevedirEpekSKVAVVGGYGGpgTTRDFYMDVHFLELDS 187
                 9********98877777666555155588999999999888888888888887776 PP

  == domain 4  score: 8.0 bits;  conditional E-value: 0.0038
     Kelch_5   2 PppRaghcavtvsekiYvyGGkv...g.rdgsvsddvyvLd 38 
                 P pR++hc++t +  ++v GG++   g +d +++ddv+ +d
  KOO23494.1 201 PKPRSDHCTCTRGPILIVSGGRGwseGkTDPGFYDDVHCYD 241
                 88*********************966699*******98765 PP

  == domain 5  score: 6.4 bits;  conditional E-value: 0.012
     Kelch_5   1 iPppRaghcav.tv...sekiYvyGGkvg.rd 27 
                 +P+ +++h a+ +    s+ ++v+GG ++ r+
  KOO23494.1 266 LPTKLWNHMAInIEsvpSDRLFVFGGQTSpRE 297
                 6999******87553346*********99443 PP

  == domain 6  score: 4.9 bits;  conditional E-value: 0.034
     Kelch_5   2 PppRaghcavtv..sekiYvyGGkvgrdgsvsddvyvLdl 39 
                 P+pR +   +++  +++++++GG+    +   +d+++L++
  KOO23494.1 323 PSPREDTGCAYDlaNGNLIFFGGWR---QRWWNDLLILNV 359
                 889999999976669*********8...666666666666 PP

  == domain 7  score: 12.4 bits;  conditional E-value: 0.00016
     Kelch_5   2 PppRaghcavtvsekiYvyGGkvg...rdgsvsddvyvLdlp 40 
                 P++R+g    + ++k+Y+yGG +     d  ++dd+y Ld++
  KOO23494.1 760 PTARFGWKLEIIKDKLYIYGGSTDptaKDVTYYDDIYSLDMK 801
                 66677777777789*********666899999*****99975 PP

>> Dynein_AAA_lid  Dynein heavy chain AAA lid domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.3   0.4   3.4e-21   2.6e-18       2     129 .]    2178    2296 ..    2177    2296 .. 0.94

  Alignments for each domain:
  == domain 1  score: 66.3 bits;  conditional E-value: 3.4e-21
  Dynein_AAA_lid    2 eelfeklvepclefvrkkckeivpvtdlnlvqslcrllealldefeekeeesadeeleeeeleevleklflfalvWSiGatldeds....rek 90  
                      eelf +++ p+l  ++ + k+++p+ d+ +vq +++ l+al +    +            + +e++e +f+f+ vW++G++++ +s    r+k
      KOO23494.1 2178 EELFARYCAPTLLELSLNYKHVTPLLDFGMVQAITNFLQALWTV---E--------NLGTKDAEMMEIYFVFSAVWAFGGAMSITSgvdyRKK 2259
                      68*****************************************9...2........34677899******************99999999*** PP

  Dynein_AAA_lid   91 fdeflrelleealklppeegtvyDyffdketgkWkpWee 129 
                      f+++++++ + ++k+p ++g v+D ++dk ++ + +W++
      KOO23494.1 2260 FSQYWKDTYK-TIKFP-HRGEVFDVYVDKAKKDFASWSD 2296
                      ********99.9****.********************86 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.2   0.0    0.0062       4.9       5      39 ..    1662    1696 ..    1661    1781 .. 0.85
   2 !   31.9   0.0   1.4e-10   1.1e-07       2     120 ..    1998    2121 ..    1997    2134 .. 0.91
   3 !    8.8   0.0    0.0019       1.5       2     138 .]    2337    2472 ..    2336    2472 .. 0.70
   4 !    8.5   0.0    0.0024       1.9       2      47 ..    2680    2725 ..    2679    2738 .. 0.89

  Alignments for each domain:
  == domain 1  score: 7.2 bits;  conditional E-value: 0.0062
                  E--SSSSHHHHHHHGGGGBS--EEEEE--TT--HH CS
       AAA_5    5 vGppGtgKselaerlaaalnreveyvqltrdttee 39  
                  +Gp GtgK+e ++ l+a l+++v + ++   + + 
  KOO23494.1 1662 QGPAGTGKTESTKDLSAQLGKTVYVFNCGPEMDYL 1696
                  6*********************9999998877654 PP

  == domain 2  score: 31.9 bits;  conditional E-value: 1.4e-10
                  EEEE--SSSSHHHHHHHGGGGB......S--EEEEE--TT--HHHHH--B--.........--------.........G-SEEEEESGGG--HHHHH CS
       AAA_5    2 vlLvGppGtgKselaerlaaal......nreveyvqltrdtteedlkgrreikngttslvdsplvraar.........egeilvlDEveraesevln 83  
                  v+ +G +G+ Ks+ ++ la++       +++v+  ++++ +t+++l g +++   t++++d+ l   +r          ++++++++++    ++++
  KOO23494.1 1998 VFCIGLSGSNKSMSWQTLARVWtkggkmGKTVWKDLNPKAITPNELYGFINM--ATREWKDGLLSSTMRdmqnatdsnPKWLILDGDLD---ANWIE 2089
                  7889*****************99**999999********************6..************999********888888888898...***** PP

                  HHHHHHHSSEEE..-SSSEEE---......-EEEEEE CS
       AAA_5   84 sLlslleerrllleeggelvkaknddllerfrviata 120 
                   ++s+++++rll+  ++e++++ ++     + +i++ 
  KOO23494.1 2090 NMNSVMDDNRLLTLASNERIRVLQN-----MKLIFEI 2121
                  **********************998.....6777665 PP

  == domain 3  score: 8.8 bits;  conditional E-value: 0.0019
                  EEEE--SSSSHHHHHHHGGGGB..S--EEEEE--TT--HHHHH--B--.........--------G-SEEEEESGGG--HHHHHHHHHHHHSSEEE. CS
       AAA_5    2 vlLvGppGtgKselaerlaaal..nreveyvqltrdtteedlkgrreikngttslvdsplvraaregeilvlDEveraesevlnsLlslleerrlll 96  
                  ++L+G  G+gK+ ++   ++ l  +   ++++++ +t+++ +   +e     ++   + +   ++++ i+++D++++a  +  ++  + ++  r + 
  KOO23494.1 2337 MMLIGSAGCGKTAMINGKLRSLpdEFGSLTINISYFTNANLFSKVIE--APLEKKAGKNFGPPGNKKLIYFVDDLNMAALDNYGTASN-ISLMRQH- 2429
                  79**************9999997777888888888777766666666..3344444445555555***********999888877744.4444444. PP

                  .-SSSEEE---..........-EEEEEESS--.-TT-TTHHHHTT- CS
       AAA_5   97 eeggelvkaknddller....frviatanpldrslnelspalrsRf 138 
                    g + ++  n+ l+e+    ++ + ++np   ++  ++p+l+++f
  KOO23494.1 2430 -AGYGHIYDLNK-LTEKvllnTQYLSAMNPTA-GSFVINPRLQRLF 2472
                  .34555544443.3444455688888888888.8888888888877 PP

  == domain 4  score: 8.5 bits;  conditional E-value: 0.0024
                  EEEE--SSSSHHHHHHHGGGGBS--EEEEE--TT--HHHHH--B-- CS
       AAA_5    2 vlLvGppGtgKselaerlaaalnreveyvqltrdtteedlkgrrei 47  
                   l+vG  G gK +la+    + + + + v +t++++ +dlk  +++
  KOO23494.1 2680 ALMVGVGGMGKQSLARLATFVNGFSAFQVVITARYSVNDLKADLQT 2725
                  699*************999999******************988775 PP

>> Filamin  Filamin/ABP280 repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.2   0.0   8.1e-15   6.3e-12       2      96 ..     461     557 ..     460     561 .. 0.87

  Alignments for each domain:
  == domain 1  score: 46.2 bits;  conditional E-value: 8.1e-15
                 CSTTSEEEESGGG.TEEETTS-EEEEEEESSSTSCCCSTTS..EEEEE..ESSTS.....EEEE...EEEE-SSSEEEEEE--SSSCEEEEEEEETTCE CS
     Filamin   2 vdpskskvnGpGi.easvagesltFtvytkdakgeksevggdelqvrivtgsphgaatkssvki...evvdnedgtytvsYtpeepgtyrvsvkldgkh 96 
                 +++++++++GpG+ +++ ag++++F+ ++kd +g+ +  g d ++++i  ++p++    ++++    ++vd ++g y++sY + +pg+y+v++ +d+++
  KOO23494.1 461 TQAKRCIAFGPGLlQNNPAGQPVKFIMQAKDIGGKLRSTGNDLINLTI--KGPNKDVPLEETPFgngNIVDLKNGRYEISYYVPTPGKYQVTLGVDENP 557
                 6899********98888***************999999999*******..999887444433334448***********************99988876 PP

>> Kelch_6  Kelch motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.8   0.0      0.21   1.6e+02       1      19 [.      24      42 ..      24      61 .. 0.86
   2 !   10.3   0.0    0.0009       0.7       1      40 [.      82     122 ..      82     135 .. 0.83
   3 !    8.4   0.1    0.0034       2.7      13      50 .]     160     204 ..     157     204 .. 0.86
   4 ?    4.3   0.0     0.067        53      10      40 ..     282     312 ..     277     318 .. 0.78
   5 !   15.3   0.1   2.3e-05     0.018      10      43 ..     771     808 ..     768     809 .. 0.93

  Alignments for each domain:
  == domain 1  score: 2.8 bits;  conditional E-value: 0.21
     Kelch_6  1 praghslvsvggkiYifGG 19
                +r ghs+++ g+k  ifGG
  KOO23494.1 24 ARSGHSITVSGNKAIIFGG 42
                589***************9 PP

  == domain 2  score: 10.3 bits;  conditional E-value: 0.0009
     Kelch_6   1 praghslvs.vgg.kiYifGGytdsspylnkvwvydpetksW 40 
                 pr+ h++++ +g+ ++ +fGG++  ++++n+ +v+++  + W
  KOO23494.1  82 PRWRHTATLlPGDdTVLVFGGLNK-GMRFNDSYVLSVAKMEW 122
                 577788866555449*********.9**********999998 PP

  == domain 3  score: 8.4 bits;  conditional E-value: 0.0034
     Kelch_6  13 kiYifGGytds...spylnkvwvydpetksWeqlp....plpvpr 50 
                 k+ ++GGy+++     ++ +v+++ +++++W +++    p p+pr
  KOO23494.1 160 KVAVVGGYGGPgttRDFYMDVHFLELDSWTWVKVGntrgPAPKPR 204
                 6779**********9999****************85555666665 PP

  == domain 4  score: 4.3 bits;  conditional E-value: 0.067
     Kelch_6  10 vggkiYifGGytdsspylnkvwvydpetksW 40 
                 + +++++fGG+t + +++n v + d  ++ W
  KOO23494.1 282 PSDRLFVFGGQTSPREFSNLVSCMDSTNMEW 312
                 679*********9977777776666655666 PP

  == domain 5  score: 15.3 bits;  conditional E-value: 2.3e-05
     Kelch_6  10 vggkiYifGGytds....spylnkvwvydpetksWeql 43 
                 + +k+Yi+GG+td+     +y+++++ +d++ k W+++
  KOO23494.1 771 IKDKLYIYGGSTDPtakdVTYYDDIYSLDMKAKLWTRI 808
                 579********************************975 PP

>> Kelch_1  Kelch motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.0   0.1    0.0013         1       1      33 [.      24      56 ..      24      61 .. 0.90
   2 ?    0.3   0.0      0.69   5.4e+02      11      39 ..      94     122 ..      88     125 .. 0.85
   3 !   14.6   0.8   2.4e-05     0.018       1      40 [.     203     248 ..     203     249 .. 0.97
   4 !    6.3   0.0    0.0093       7.3      12      39 ..     284     312 ..     281     314 .. 0.91
   5 !    9.8   0.0   0.00073      0.57      10      41 ..     771     807 ..     768     808 .. 0.94

  Alignments for each domain:
  == domain 1  score: 9.0 bits;  conditional E-value: 0.0013
                BBBSEEEEEETTEEEEEEEBCSSSBEEEEEEEE CS
     Kelch_1  1 aragagavvvggkiYviGGsdggnalssvevyD 33
                ar+g++ +v g+k  ++GG+   +  ++v +++
  KOO23494.1 24 ARSGHSITVSGNKAIIFGGCGVAKDGNTVQIFN 56
                69*******************999999998887 PP

  == domain 2  score: 0.3 bits;  conditional E-value: 0.69
                 TTEEEEEEEBCSSSBEEEEEEEETTTTEE CS
     Kelch_1  11 ggkiYviGGsdggnalssvevyDpetntW 39 
                 ++ + v+GG + g + ++ +v+++ + +W
  KOO23494.1  94 DDTVLVFGGLNKGMRFNDSYVLSVAKMEW 122
                 7889********99999988888777666 PP

  == domain 3  score: 14.6 bits;  conditional E-value: 2.4e-05
                 BBBSEEEEEETTEEEEEEEBCS......SSBEEEEEEEETTTTEEE CS
     Kelch_1   1 aragagavvvggkiYviGGsdg......gnalssvevyDpetntWr 40 
                 +r+ ++ ++ g  + v GG+        + + ++v +yD ++n+W 
  KOO23494.1 203 PRSDHCTCTRGPILIVSGGRGWsegktdPGFYDDVHCYDYVKNEWV 248
                 79*******************************************6 PP

  == domain 4  score: 6.3 bits;  conditional E-value: 0.0093
                 TEEEEEEEBCS.SSBEEEEEEEETTTTEE CS
     Kelch_1  12 gkiYviGGsdg.gnalssvevyDpetntW 39 
                 ++++v+GG+ +  ++++ v ++D+++ +W
  KOO23494.1 284 DRLFVFGGQTSpREFSNLVSCMDSTNMEW 312
                 689*********************99888 PP

  == domain 5  score: 9.8 bits;  conditional E-value: 0.00073
                 ETTEEEEEEEBCS.....SSBEEEEEEEETTTTEEEE CS
     Kelch_1  10 vggkiYviGGsdg.....gnalssvevyDpetntWre 41 
                 + +k+Y+ GGs +      ++ ++++ +D + + W++
  KOO23494.1 771 IKDKLYIYGGSTDptakdVTYYDDIYSLDMKAKLWTR 807
                 789********************************97 PP

>> Kelch_2  Kelch motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.3   0.1   0.00034      0.27       1      35 [.      24      59 ..      24      77 .. 0.79
   2 !    7.9   0.0     0.004       3.2       5      46 ..      86     126 ..      82     129 .. 0.81
   3 !    9.0   0.0    0.0018       1.4      12      45 ..     159     193 ..     135     195 .. 0.92
   4 ?    4.0   0.3     0.069        54       2      43 ..     204     248 ..     203     250 .. 0.87
   5 ?    5.4   0.0     0.025        19       8      44 ..     280     314 ..     275     315 .. 0.93
   6 ?   -1.2   0.0         3   2.4e+03       4      20 ..     330     346 ..     329     359 .. 0.78
   7 ?    3.2   0.0      0.12        97      11      26 ..     772     783 ..     770     800 .. 0.70

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00034
     Kelch_2  1 rrgghsssvpggkiyvvGGa.htdnpnlsssdvhvl 35
                +r+ghs++v+g+k +++GG   + ++n +++ + ++
  KOO23494.1 24 ARSGHSITVSGNKAIIFGGCgVAKDGNTVQIFNETW 59
                69******************9666666666666555 PP

  == domain 2  score: 7.9 bits;  conditional E-value: 0.004
     Kelch_2   5 hsssvp..ggkiyvvGGahtdnpnlsssdvhvldlekhvWeevt 46 
                 h+++ +  ++ ++v+GG    n++  ++d +vl   k +W    
  KOO23494.1  86 HTATLLpgDDTVLVFGGL---NKGMRFNDSYVLSVAKMEWNIKE 126
                 555544458999******...*******************8665 PP

  == domain 3  score: 9.0 bits;  conditional E-value: 0.0018
     Kelch_2  12 gkiyvvGGa.htdnpnlsssdvhvldlekhvWeev 45 
                 +k+ vvGG+ +++ + ++ +dvh+l l++++W +v
  KOO23494.1 159 SKVAVVGGYgGPGTTRDFYMDVHFLELDSWTWVKV 193
                 7899****************************987 PP

  == domain 4  score: 4.0 bits;  conditional E-value: 0.069
     Kelch_2   2 rgghsssvpggkiyvvGGa...htdnpnlsssdvhvldlekhvWe 43 
                 r+ h +++ g  ++v GG+   ++  ++ + +dvh++d  k++W 
  KOO23494.1 204 RSDHCTCTRGPILIVSGGRgwsEGKTDPGFYDDVHCYDYVKNEWV 248
                 666666677778999*****************************6 PP

  == domain 5  score: 5.4 bits;  conditional E-value: 0.025
     Kelch_2   8 svpggkiyvvGGahtdnpnlsssdvhvldlekhvWee 44 
                 svp ++++v+GG     p ++s+ v ++d    +W+ 
  KOO23494.1 280 SVPSDRLFVFGGQ--TSPREFSNLVSCMDSTNMEWDT 314
                 7999*********..*****************99985 PP

  == domain 6  score: -1.2 bits;  conditional E-value: 3
     Kelch_2   4 ghsssvpggkiyvvGGa 20 
                 g+++   +g ++++GG+
  KOO23494.1 330 GCAYDLANGNLIFFGGW 346
                 68888899********9 PP

  == domain 7  score: 3.2 bits;  conditional E-value: 0.12
     Kelch_2  11 ggkiyvvGGahtdnpn 26 
                  +k+y++GG+    ++
  KOO23494.1 772 KDKLYIYGGS----TD 783
                 68********....22 PP

>> TIG  IPT/TIG domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.8   0.1   2.5e-09     2e-06       4      75 ..     370     447 ..     367     457 .. 0.84

  Alignments for each domain:
  == domain 1  score: 27.8 bits;  conditional E-value: 2.5e-09
         TIG   4 ssisPnsgsasgGttititGtnFgtnssdssvtiggtpctvta....svssttlvcttPpgp..sg.llnvsvlvdgaq 75 
                 +s +P +g+  gGt it+ G  F ++++ +sv++ +++    +    ++s+t+l c++P  +  ++ +++v v  +g++
  KOO23494.1 370 QSMTPDTGPQTGGTPITLYGLRF-KQTTLVSVRFTDQKKAEATvggvWISETELQCKSPDFTkfGAlDVTVRVSLGGDA 447
                 799********************.**********9999988888******************86445666666666633 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.2   0.0    0.0073       5.7      12      61 ..    1663    1706 ..    1662    1715 .. 0.85
   2 ?   -0.4   0.0       1.6   1.2e+03       7      27 ..    1997    2017 ..    1994    2050 .. 0.91
   3 ?    3.8   0.0     0.085        67       8      60 ..    2337    2382 ..    2335    2412 .. 0.72

  Alignments for each domain:
  == domain 1  score: 7.2 bits;  conditional E-value: 0.0073
      AAA_22   12 GesGtGKTtllrrlleqldeeakaeeerpevvfvtlpsst...sskdllrell 61  
                  G++GtGKT + + l  ql         +++v+ +++  ++   +  d+++ l+
  KOO23494.1 1663 GPAGTGKTESTKDLSAQL---------GKTVYVFNCGPEMdylTMNDIFKGLA 1706
                  9*****************.........99999999999886666666666655 PP

  == domain 2  score: -0.4 bits;  conditional E-value: 1.6
      AAA_22    7 ilvvtGesGtGKTtllrrlle 27  
                  +++++G sG+ K+++ ++l++
  KOO23494.1 1997 SVFCIGLSGSNKSMSWQTLAR 2017
                  689************999875 PP

  == domain 3  score: 3.8 bits;  conditional E-value: 0.085
      AAA_22    8 lvvtGesGtGKTtllrrlleqldeeakaeeerpevvfvtlpsstsskdllrel 60  
                  ++++G +G+GKT  ++  l++l+        + + ++++++  t+   + + +
  KOO23494.1 2337 MMLIGSAGCGKTAMINGKLRSLPD-------EFGSLTINISYFTNANLFSKVI 2382
                  579************998888864.......5555666666666555555444 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.0   0.0      0.16   1.2e+02      31      58 ..    1663    1689 ..    1654    1721 .. 0.86
   2 ?    6.5   0.0     0.013        10      27      58 ..    2337    2369 ..    2326    2401 .. 0.74
   3 ?   -0.1   0.1       1.3     1e+03      17      43 ..    2670    2696 ..    2662    2714 .. 0.87

  Alignments for each domain:
  == domain 1  score: 3.0 bits;  conditional E-value: 0.16
      AAA_16   31 GesGvGKsslvrellralekdggiflrg 58  
                  G++G+GK+   + l  +l k+ ++++++
  KOO23494.1 1663 GPAGTGKTESTKDLSAQLGKT-VYVFNC 1689
                  9**************999999.776554 PP

  == domain 2  score: 6.5 bits;  conditional E-value: 0.013
      AAA_16   27 vllsGesGvGKsslvrellralekd.ggiflrg 58  
                  ++l+G +G+GK+++++  lr+l ++ g ++++ 
  KOO23494.1 2337 MMLIGSAGCGKTAMINGKLRSLPDEfGSLTINI 2369
                  689************888888888843333333 PP

  == domain 3  score: -0.1 bits;  conditional E-value: 1.3
      AAA_16   17 ervrsgrpelvllsGesGvGKsslvre 43  
                  +r+ +++++  l +G  G+GK sl+r 
  KOO23494.1 2670 SRIIESSGGHALMVGVGGMGKQSLARL 2696
                  57778888999**********999986 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.0   0.0     0.079        61       5      32 ..    1663    1690 ..    1662    1716 .. 0.89
   2 ?    7.2   0.0    0.0084       6.5       1      67 [.    2337    2409 ..    2337    2429 .. 0.62

  Alignments for each domain:
  == domain 1  score: 4.0 bits;  conditional E-value: 0.079
                  SSTTSSHHHHHHHHHHHHTHEEEEEETT CS
         AAA    5 GppGtGKTllakavakelgvefleisgs 32  
                  Gp GtGKT   k +  +lg +++ +++ 
  KOO23494.1 1663 GPAGTGKTESTKDLSAQLGKTVYVFNCG 1690
                  9*****************9888877775 PP

  == domain 2  score: 7.2 bits;  conditional E-value: 0.0084
                  EEEESSTTSSHHHHHHHHHHHHTHEE..EEEETTTCSSSSTTHHHHHHHHHHHH.HHHTS.........TSEEEEEETG CS
         AAA    1 vllyGppGtGKTllakavakelgvef..leisgsellskyvgesekkirelfke.akeka.........kpsilfiDEi 67  
                  ++l+G  G+GKT++++   ++l  ef  l+i+ s ++      +++ +++++++ +++ka         k+ i f+D++
  KOO23494.1 2337 MMLIGSAGCGKTAMINGKLRSLPDEFgsLTINISYFT------NANLFSKVIEApLEKKAgknfgppgnKKLIYFVDDL 2409
                  79*************9999998544433777777777......333333333332222223335555544466666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (4439 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       748  (0.0417201); expected 358.6 (0.02)
Passed bias filter:                      533  (0.0297284); expected 358.6 (0.02)
Passed Vit filter:                        80  (0.00446204); expected 17.9 (0.001)
Passed Fwd filter:                        27  (0.00150594); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              23  [number of targets reported over threshold]
# CPU time: 1.81u 0.31s 00:00:02.12 Elapsed: 00:00:00.49
# Mc/sec: 27243.08
//
Query:       KOO23495.1  [L=179]
Description: udp-n-acetylglucosamine transferase subunit alg13-like protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.3e-11   44.0   0.0    8.9e-09   35.5   0.0    2.1  2  Glyco_tran_28_C  Glycosyltransferase family 28 C-terminal dom


Domain annotation for each model (and alignments):
>> Glyco_tran_28_C  Glycosyltransferase family 28 C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.6   0.0    0.0004       7.2       2      41 ..      36      76 ..      35      84 .. 0.85
   2 !   35.5   0.0   4.9e-13   8.9e-09      78     146 ..      93     156 ..      91     173 .. 0.93

  Alignments for each domain:
  == domain 1  score: 6.6 bits;  conditional E-value: 0.0004
                     EEEEE-SSSHHHHHCCCTSHHHHHHHH.HHHHCHHHCCT-E CS
  Glyco_tran_28_C  2 ilVtGGSqgaeaLnelvlselkllelk.srelqvlhqtGkr 41
                     ++ t+G+++++ L  + ls++ l +l  ++ + ++ q G++
       KOO23495.1 36 VFATVGTTQFDELTTTLLSDEVLSTLAaQGYTRLVMQLGRG 76
                     899*****************999999865678888888876 PP

  == domain 2  score: 35.5 bits;  conditional E-value: 4.9e-13
                      ECS-CHHHHHHHHTT--EEEE--TT....S-HHHHHHHHHHHHHHSSEEEE-STTCHHHHHHHHCCS-- CS
  Glyco_tran_28_C  78 sRAGagtiaEllalgkplIlvplpeaaenhqdnNakelekagaalvleqkeltpekLeeallelaaekl 146
                      ++AGag+i+E ++l + +++v+++     ++ n+++el+ ++ ++ ++ +++ p++L+ +l++l +++ 
       KOO23495.1  93 CHAGAGSILEGMRLRAIMVVVVNDA----LMHNHQQELAGELHERRHLLSTV-PSQLAVTLRDLGQKPP 156
                      8************************....***********************.*********9988876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (179 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       317  (0.0176809); expected 358.6 (0.02)
Passed bias filter:                      267  (0.0148921); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.34u 0.24s 00:00:00.58 Elapsed: 00:00:00.36
# Mc/sec: 1492.28
//
Query:       KOO23496.1  [L=711]
Description: hypothetical protein Ctob_002005 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.8e-21   75.8   0.0    2.3e-15   57.1   0.0    2.2  2  O-FucT    GDP-fucose protein O-fucosyltransferase
    1.3e-09   37.4  15.6      0.001   19.0   0.1    5.0  5  TPR_2     Tetratricopeptide repeat
    3.4e-07   29.8   4.3       0.16   12.1   0.0    4.0  3  TPR_7     Tetratricopeptide repeat
    9.5e-06   26.0   7.5    0.00015   22.2   0.7    3.7  4  TPR_19    Tetratricopeptide repeat
    1.6e-05   24.5   2.1        2.3    8.2   0.0    4.2  4  TPR_1     Tetratricopeptide repeat
    0.00021   21.9   4.1    0.00021   21.9   4.1    6.0  7  TPR_16    Tetratricopeptide repeat
    0.00044   20.8  30.6      0.086   13.7   2.9    5.5  4  TPR_14    Tetratricopeptide repeat
     0.0024   18.1  22.5      0.034   14.4   6.1    4.3  5  TPR_12    Tetratricopeptide repeat
     0.0039   16.8   0.4        1.5    8.6   0.0    3.2  2  TPR_11    TPR repeat
  ------ inclusion threshold ------
      0.089   12.7  13.6        2.1    8.4   0.4    4.0  3  TPR_10    Tetratricopeptide repeat
       0.12   12.8   0.1         19    5.9   0.0    2.9  2  TPR_17    Tetratricopeptide repeat
        1.5    9.6   4.6         91    4.0   0.0    4.3  4  TPR_6     Tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> O-FucT  GDP-fucose protein O-fucosyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.1   0.0   1.6e-18   2.3e-15       7     274 ..     291     578 ..     289     609 .. 0.72
   2 !   16.5   0.0   3.5e-06    0.0053     305     334 ..     634     663 ..     626     665 .. 0.91

  Alignments for each domain:
  == domain 1  score: 57.1 bits;  conditional E-value: 1.6e-18
      O-FucT   7 aeGgfNnqrdvilrmvavarllnaTLVlPpw..dqlshwrdss..kqnrlpFsdfFdiesLkkdv.rviemeeflkelppelwsaekr........... 89 
                 + G fNn   +++ m+a+ rll + LVlP +     + +++ s  +++ lp s+fF++++L++   +v e+ e+l e + +  ++ ++           
  KOO23496.1 291 SCGQFNNVLASLIHMLALSRLLCRPLVLPGFfvRFGARLTRVSafTERWLPTSHFFNLTALRQAGfDVRELREWLPEGQARELPRLHCravgsgppqmr 389
                 5699***************************663346667777899***************99987899888888744433333333345455555555 PP

      O-FucT  90 ......ksvckeakpsyylkeilpllkkkkvvqlakfqklrCrskqgnpfg.lwdnfevsfeaelvlhdefg......e..eWkarv....daLrFske 169
                       +s++ + ++++   ++l++ ++ + v     ++   ++++       w++ + ++++e++++d         +  +W++++     +Lr+  +
  KOO23496.1 390 ffafhnISFATKLPAKFP--HFLQQQSELRWVSDDASRHGYFSRFEAGLGAkWWRATYGDEASEVLAFDAAPsvgmgmDhlRWDEALrytrGHLRYVGP 486
                 555533333333333333..3444444444455555555555555555555566666555555555555544433334258999988778888****** PP

      O-FucT 170 ieelaaklvkrllekrkakggpylalHLRrekDfla.aCehgggeeellaspresrreegk.ltpeecvpsleeialqlkgllkel..kltsvfvAtde 264
                 i+++a +++ +l+        p+la+H+Rr+ D l   C+++ g+           r  g  +t ++c+ps e++a+++  + ++      ++f+Atd+
  KOO23496.1 487 IHAEATRVRTALFG-----TAPFLAVHIRRGADRLHdFCHTAWGQ-----------RCFGWnITMDMCYPSTEAVARRIVAARDQWgiAPGNIFLATDS 569
                 ************77.....67***************999988554...........4556679*****************999997445689******8 PP

      O-FucT 265 iyggeelkel 274
                  + +  +++l
  KOO23496.1 570 PSPEL-FEDL 578
                 88655.5555 PP

  == domain 2  score: 16.5 bits;  conditional E-value: 3.5e-06
      O-FucT 305 aiDqiicsrsdvFigtyeStfsafvkreRe 334
                  +Dq ic+ + +F+g+  St++a + +eR+
  KOO23496.1 634 TVDQTICAAAPYFLGNVPSTVTATIVQERD 663
                 79***************************8 PP

>> TPR_2  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.9   0.9       0.1   1.5e+02      14      33 ..      25      44 ..      13      45 .. 0.77
   2 !   19.0   0.1   6.9e-07     0.001       1      34 []      88     121 ..      88     121 .. 0.95
   3 !    6.8   0.2    0.0056       8.3       7      31 ..     128     152 ..     123     155 .. 0.88
   4 !   16.6   0.2   3.9e-06    0.0058       2      32 ..     157     187 ..     156     189 .. 0.94
   5 ?   -2.3   0.0       4.6   6.9e+03      16      23 ..     469     476 ..     468     478 .. 0.82

  Alignments for each domain:
  == domain 1  score: 2.9 bits;  conditional E-value: 0.1
       TPR_2 14 lgdyeeAleafekAleldPn 33
                   +e+A+++f  A + dP+
  KOO23496.1 25 HEAPERARACFADAARADPH 44
                66689*************97 PP

  == domain 2  score: 19.0 bits;  conditional E-value: 6.9e-07
       TPR_2   1 aealynlGlayyklgdyeeAleafekAleldPnn 34 
                 a al  lG a++++g+++ A++ +e Al+l P++
  KOO23496.1  88 AAALRGLGVAHENAGEWKVAAASYEDALSLVPRD 121
                 6899**************************9976 PP

  == domain 3  score: 6.8 bits;  conditional E-value: 0.0056
       TPR_2   7 lGlayyklgdyeeAleafekAleld 31 
                 l+++  + g+y eA+e +++Al+ d
  KOO23496.1 128 LANVRSAIGEYVEAVEVLRAALAED 152
                 78888899**************977 PP

  == domain 4  score: 16.6 bits;  conditional E-value: 3.9e-06
       TPR_2   2 ealynlGlayyklgdyeeAleafekAleldP 32 
                  a++ l++++++lgd + Al++  +Alel P
  KOO23496.1 157 PAHHGLARLLRHLGDAAGALRHAHAALELRP 187
                 589**************************99 PP

  == domain 5  score: -2.3 bits;  conditional E-value: 4.6
       TPR_2  16 dyeeAlea 23 
                 +++eAl++
  KOO23496.1 469 RWDEALRY 476
                 79999998 PP

>> TPR_7  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.1   0.0    0.0001      0.16       2      28 ..      91     117 ..      90     121 .. 0.85
   2 !   10.9   0.1   0.00025      0.37       5      30 ..     128     151 ..     124     154 .. 0.88
   3 ?    5.7   0.3     0.011        17       1      35 [.     158     190 ..     158     191 .. 0.87

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 0.0001
       TPR_7   2 LlnLarlysrlGdyeeAielyeqsLal 28 
                 L  L++++++ G+++ A+  ye +L l
  KOO23496.1  91 LRGLGVAHENAGEWKVAAASYEDALSL 117
                 667********************7765 PP

  == domain 2  score: 10.9 bits;  conditional E-value: 0.00025
       TPR_7   5 LarlysrlGdyeeAielyeqsLaltk 30 
                 La+++s+ G+y eA+e++++  al++
  KOO23496.1 128 LANVRSAIGEYVEAVEVLRA--ALAE 151
                 9*******************..6655 PP

  == domain 3  score: 5.7 bits;  conditional E-value: 0.011
       TPR_7   1 aLlnLarlysrlGdyeeAielyeqsLaltkdpeda 35 
                 a++ Larl + lGd + A+++  +  al+ +p+da
  KOO23496.1 158 AHHGLARLLRHLGDAAGALRHAHA--ALELRPFDA 190
                 6789********************..777777775 PP

>> TPR_19  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.2       1.5   2.3e+03       5      24 ..      26      47 ..      21      60 .. 0.56
   2 ?   -1.4   0.1       2.4   3.6e+03      24      34 ..      72      82 ..      67      86 .. 0.86
   3 !   22.2   0.7   9.8e-08   0.00015       5      67 ..     102     164 ..     100     166 .. 0.90
   4 !   16.1   1.1   8.1e-06     0.012       5      63 ..     136     194 ..     136     199 .. 0.90

  Alignments for each domain:
  == domain 1  score: -0.8 bits;  conditional E-value: 1.5
      TPR_19  5 gdyaeAlalleqalqedpk..n 24
                + +++A a ++ a  +dp+   
  KOO23496.1 26 EAPERARACFADAARADPHahA 47
                4455666666666666666444 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 2.4
      TPR_19 24 naearllLAea 34
                +a+arl+LAea
  KOO23496.1 72 HAAARLGLAEA 82
                689******98 PP

  == domain 3  score: 22.2 bits;  conditional E-value: 9.8e-08
      TPR_19   5 gdyaeAlalleqalqedpknaearllLAeallalgqldeAealLdalpeedpddaryasLlAk 67 
                 g    A+a +e al+  p + +a ++LA++  a g++ eA ++L a+++ed+ ++ ++  lA+
  KOO23496.1 102 GEWKVAAASYEDALSLVPRDCAASAGLANVRSAIGEYVEAVEVLRAALAEDHACPPAHHGLAR 164
                 77889************************************************9666655555 PP

  == domain 4  score: 16.1 bits;  conditional E-value: 8.1e-06
      TPR_19   5 gdyaeAlalleqalqedpknaearllLAeallalgqldeAealLdalpeedpddaryas 63 
                 g y eA++ l++al+ed   + a  +LA++l  lg+ + A +   a++e  p da y +
  KOO23496.1 136 GEYVEAVEVLRAALAEDHACPPAHHGLARLLRHLGDAAGALRHAHAALELRPFDASYEA 194
                 789***************************************99999999999976653 PP

>> TPR_1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.0       1.9   2.9e+03       1      12 [.      13      24 ..      13      26 .. 0.83
   2 !    8.1   0.0    0.0016       2.5       1      33 [.      88     120 ..      88     121 .. 0.93
   3 ?    5.1   0.1     0.015        22       6      31 ..     127     152 ..     123     155 .. 0.89
   4 !    8.2   0.0    0.0015       2.3       2      32 ..     157     187 ..     156     189 .. 0.93

  Alignments for each domain:
  == domain 1  score: -1.6 bits;  conditional E-value: 1.9
                HHHHHHHHHHHH CS
       TPR_1  1 akalynlGnayf 12
                a a+ +lG+ ++
  KOO23496.1 13 AAAWLQLGLELQ 24
                789*****9875 PP

  == domain 2  score: 8.1 bits;  conditional E-value: 0.0016
                 HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT CS
       TPR_1   1 akalynlGnayfklgkydeAleyyekALelnPn 33 
                 a al +lG+a+ + g+++ A + ye AL+l P 
  KOO23496.1  88 AAALRGLGVAHENAGEWKVAAASYEDALSLVPR 120
                 67999************************9886 PP

  == domain 3  score: 5.1 bits;  conditional E-value: 0.015
                 HHHHHHHHTT-HHHHHHHHHHHHHHS CS
       TPR_1   6 nlGnayfklgkydeAleyyekALeln 31 
                 +l+n+    g+y eA+e  + AL  +
  KOO23496.1 127 GLANVRSAIGEYVEAVEVLRAALAED 152
                 6999999***************9876 PP

  == domain 4  score: 8.2 bits;  conditional E-value: 0.0015
                 HHHHHHHHHHHHTT-HHHHHHHHHHHHHHST CS
       TPR_1   2 kalynlGnayfklgkydeAleyyekALelnP 32 
                  a+ +l+ ++++lg+   Al +   ALel+P
  KOO23496.1 157 PAHHGLARLLRHLGDAAGALRHAHAALELRP 187
                 58999*************************9 PP

>> TPR_16  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.2   1.6     0.046        69       6      33 ..      21      45 ..       8      59 .. 0.71
   2 ?   -1.0   1.7         2   2.9e+03      33      44 ..      72      83 ..      61      91 .. 0.61
   3 !    7.3   7.1     0.005       7.5      31      65 ..      85     119 ..      72     126 .. 0.82
   4 !   21.9   4.1   1.4e-07   0.00021       3      63 ..      94     151 ..      92     159 .. 0.91
   5 !   14.5   9.1   2.8e-05     0.042       3      68 .]     128     190 ..     126     190 .. 0.93
   6 ?    0.1   7.2      0.91   1.4e+03       1      63 [.     176     238 ..     176     241 .. 0.80
   7 ?   -2.0   1.2       4.1   6.1e+03      16      56 ..     610     617 ..     599     626 .. 0.52

  Alignments for each domain:
  == domain 1  score: 4.2 bits;  conditional E-value: 0.046
      TPR_16  6 aalragdyddAaaaleaalkrdpssPda 33
                + l++  +++A+a +  a ++d   P a
  KOO23496.1 21 LELQHEAPERARACFADAARAD---PHA 45
                4566666777777777777777...642 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 2
      TPR_16 33 aaeAllllgdaa 44
                +a+A+l+l++a 
  KOO23496.1 72 HAAARLGLAEAN 83
                666666666653 PP

  == domain 3  score: 7.3 bits;  conditional E-value: 0.005
      TPR_16  31 PdaaeAllllgdaalrqgrlaeAaalyraalraap 65 
                 ++ a+Al +lg+a+  +g+++ Aaa y+ al   p
  KOO23496.1  85 SAVAAALRGLGVAHENAGEWKVAAASYEDALSLVP 119
                 5579***********************99996555 PP

  == domain 4  score: 21.9 bits;  conditional E-value: 1.4e-07
      TPR_16   3 laraalragdyddAaaaleaalkrdpssPdaaeAllllgdaalrqgrlaeAaalyraalra 63 
                 l+ a+ +ag++  Aaa +e al +    P++ +A+ +l++++ + g++ eA++++raal++
  KOO23496.1  94 LGVAHENAGEWKVAAASYEDALSLV---PRDCAASAGLANVRSAIGEYVEAVEVLRAALAE 151
                 5778899******************...******************************954 PP

  == domain 5  score: 14.5 bits;  conditional E-value: 2.8e-05
      TPR_16   3 laraalragdyddAaaaleaalkrdpssPdaaeAllllgdaalrqgrlaeAaalyraalraapdap 68 
                 la+ + + g+y +A+++l+aal+ d    +++ A+ +l++++ ++g+ a+A+    aal+  p+++
  KOO23496.1 128 LANVRSAIGEYVEAVEVLRAALAED---HACPPAHHGLARLLRHLGDAAGALRHAHAALELRPFDA 190
                 677777889****************...9*****************************99999985 PP

  == domain 6  score: 0.1 bits;  conditional E-value: 0.91
      TPR_16   1 lalaraalragdyddAaaaleaalkrdpssPdaaeAllllgdaal.rqgrlaeAaalyraalra 63 
                 l +a+aal+++ +d+  +a  +al+ d+++P +a ++ +  d+ + + +  a+A a+  aa +a
  KOO23496.1 176 LRHAHAALELRPFDASYEATLRALRGDGVPP-DALSYGAASDISAtAVPSAAAAMAVASAACGA 238
                 679****************************.57777777777774556666666777777655 PP

  == domain 7  score: -2.0 bits;  conditional E-value: 4.1
      TPR_16  16 AaaaleaalkrdpssPdaaeAllllgdaalrqgrlaeAaal 56 
                 Aa+a+ +                                a+
  KOO23496.1 610 AARAA-I--------------------------------AA 617
                 22111.2................................22 PP

>> TPR_14  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.8   2.8     0.086   1.3e+02       2      35 ..      14      46 ..      13      55 .. 0.79
   2 !   12.7   0.2   0.00012      0.18       2      34 ..      89     121 ..      88     125 .. 0.93
   3 !   11.0   0.8   0.00042      0.63       6      44 .]     127     165 ..     123     165 .. 0.90
   4 !   13.7   2.9   5.8e-05     0.086       3      35 ..     158     190 ..     156     200 .. 0.81

  Alignments for each domain:
  == domain 1  score: 3.8 bits;  conditional E-value: 0.086
      TPR_14  2 eallalaeallalGdpdeAiallrralalaPdda 35
                +a+l+l+ ++l+ + p++A+a++ +a +++P   
  KOO23496.1 14 AAWLQLG-LELQHEAPERARACFADAARADPHAH 46
                5666666.6778889***************9764 PP

  == domain 2  score: 12.7 bits;  conditional E-value: 0.00012
      TPR_14   2 eallalaeallalGdpdeAiallrralalaPdd 34 
                 +al+ l+ a++++G+++ A+a +++al+l P d
  KOO23496.1  89 AALRGLGVAHENAGEWKVAAASYEDALSLVPRD 121
                 78999***********************99976 PP

  == domain 3  score: 11.0 bits;  conditional E-value: 0.00042
      TPR_14   6 alaeallalGdpdeAiallrralalaPddaeawlllaql 44 
                  la +  a G++ eA+++lr+ala + + + a+  la+l
  KOO23496.1 127 GLANVRSAIGEYVEAVEVLRAALAEDHACPPAHHGLARL 165
                 589999999***************999999999999986 PP

  == domain 4  score: 13.7 bits;  conditional E-value: 5.8e-05
      TPR_14   3 allalaeallalGdpdeAiallrralalaPdda 35 
                 a+  la++l++lGd ++A++++++al+l P da
  KOO23496.1 158 AHHGLARLLRHLGDAAGALRHAHAALELRPFDA 190
                 67789************************9554 PP

>> TPR_12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.5       1.2   1.8e+03      43      74 ..      11      41 ..      10      43 .. 0.82
   2 !   11.1   1.4   0.00025      0.37      39      74 ..      82     117 ..      53     120 .. 0.84
   3 !   12.1   2.5   0.00012      0.18       2      73 ..      87     150 ..      87     150 .. 0.90
   4 !   14.4   6.1   2.3e-05     0.034       4      66 ..     124     184 ..     120     185 .. 0.84
   5 !   12.7   2.5   7.7e-05      0.12       5      48 ..     158     199 ..     152     201 .. 0.82

  Alignments for each domain:
  == domain 1  score: -0.7 bits;  conditional E-value: 1.2
      TPR_12 43 ltattlrnLgrlyralgryeeAlelleealai 74
                 ta++   Lg  + + + +e A++ + +a ++
  KOO23496.1 11 STAAAWLQLGLEL-QHEAPERARACFADAARA 41
                5899999999997.777999999999998775 PP

  == domain 2  score: 11.1 bits;  conditional E-value: 0.00025
      TPR_12  39 pdhpltattlrnLgrlyralgryeeAlelleealai 74 
                  +  ++a++lr+Lg +++ +g+++ A + +e+al +
  KOO23496.1  82 ANVSAVAAALRGLGVAHENAGEWKVAAASYEDALSL 117
                 555689***************************987 PP

  == domain 3  score: 12.1 bits;  conditional E-value: 0.00012
      TPR_12   2 vatalnnlaavlrrlgrydeAlellekaleiarrllGpdhpltattlrnLgrlyralgryeeAlelleeala 73 
                 va+al+ l++++  +g++  A + +e al ++     p     +++  +L+ + +a g+y eA+e l+ ala
  KOO23496.1  87 VAAALRGLGVAHENAGEWKVAAASYEDALSLV-----PR---DCAASAGLANVRSAIGEYVEAVEVLRAALA 150
                 58899899********************9999.....86...589999999999999999999999999986 PP

  == domain 4  score: 14.4 bits;  conditional E-value: 2.3e-05
      TPR_12   4 talnnlaavlrrlgrydeAlellekaleiarrllGpdhpltattlrnLgrlyralgryeeAle 66 
                 +++  la+v  + g+y eA e l++al+   + + p h+++a+ lr Lg++  al +  +Ale
  KOO23496.1 124 ASA-GLANVRSAIGEYVEAVEVLRAALAEDHACP-PAHHGLARLLRHLGDAAGALRHAHAALE 184
                 344.7*************************9997.6777*************99966666665 PP

  == domain 5  score: 12.7 bits;  conditional E-value: 7.7e-05
      TPR_12   5 alnnlaavlrrlgrydeAlellekaleiarrllGpdhpltattl 48 
                 a++ la +lr+lg+ + Al++ ++ale++   ++  +++t+++l
  KOO23496.1 158 AHHGLARLLRHLGDAAGALRHAHAALELR--PFDASYEATLRAL 199
                 5678***********************99..3445666666666 PP

>> TPR_11  TPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.1   0.1    0.0061       9.2       8      38 ..     102     132 ..      95     136 .. 0.89
   2 !    8.6   0.0   0.00098       1.5       6      35 ..     134     163 ..     129     170 .. 0.87

  Alignments for each domain:
  == domain 1  score: 6.1 bits;  conditional E-value: 0.0061
      TPR_11   8 GkyeeAieaYkkAlkldPdnaeayynLGlay 38 
                 G+++ A ++Y+ Al l P +  a  +L+++ 
  KOO23496.1 102 GEWKVAAASYEDALSLVPRDCAASAGLANVR 132
                 89999***************99999999885 PP

  == domain 2  score: 8.6 bits;  conditional E-value: 0.00098
      TPR_11   6 eqGkyeeAieaYkkAlkldPdnaeayynLG 35 
                 + G+y eA+e++++Al+ d   + a+++L+
  KOO23496.1 134 AIGEYVEAVEVLRAALAEDHACPPAHHGLA 163
                 679******************999999998 PP

>> TPR_10  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.4   0.4    0.0014       2.1       1      30 [.      87     116 ..      87     117 .. 0.95
   2 ?    3.6   0.4     0.042        63       8      30 ..     128     150 ..     126     154 .. 0.80
   3 ?    7.0   1.5    0.0038       5.6       8      32 ..     162     186 ..     160     186 .. 0.94

  Alignments for each domain:
  == domain 1  score: 8.4 bits;  conditional E-value: 0.0014
      TPR_10   1 tAsslnNLanalrqrgrydeAealleeala 30 
                 +A++l  L++a+ + g+++ A a +e+al+
  KOO23496.1  87 VAAALRGLGVAHENAGEWKVAAASYEDALS 116
                 699*************************97 PP

  == domain 2  score: 3.6 bits;  conditional E-value: 0.042
      TPR_10   8 LanalrqrgrydeAealleeala 30 
                 Lan+ ++ g+y eA++ l+ ala
  KOO23496.1 128 LANVRSAIGEYVEAVEVLRAALA 150
                 78888888888888888888886 PP

  == domain 3  score: 7.0 bits;  conditional E-value: 0.0038
      TPR_10   8 LanalrqrgrydeAealleealair 32 
                 La++lr++g+ ++A+++++ al++r
  KOO23496.1 162 LARLLRHLGDAAGALRHAHAALELR 186
                 9*********************986 PP

>> TPR_17  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.8   0.0     0.059        88       2      34 .]     111     143 ..     110     143 .. 0.94
   2 ?    5.9   0.0     0.013        19      13      33 ..     156     176 ..     145     177 .. 0.85

  Alignments for each domain:
  == domain 1  score: 3.8 bits;  conditional E-value: 0.059
      TPR_17   2 ylkaleldPnnadaynnLAelllknGdlmtArq 34 
                 y+ al l P +  a   LA++ + +G++ +A++
  KOO23496.1 111 YEDALSLVPRDCAASAGLANVRSAIGEYVEAVE 143
                 999***************************975 PP

  == domain 2  score: 5.9 bits;  conditional E-value: 0.013
      TPR_17  13 adaynnLAelllknGdlmtAr 33 
                 ++a++ LA+ll+++Gd + A+
  KOO23496.1 156 PPAHHGLARLLRHLGDAAGAL 176
                 689*************99885 PP

>> TPR_6  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.1   0.2       1.2   1.8e+03       2      31 ..      15      43 ..      14      45 .. 0.79
   2 ?    4.0   0.0     0.061        91       2      31 ..      90     119 ..      89     121 .. 0.86
   3 ?   -0.2   0.1       1.4   2.1e+03       6      28 ..     128     150 ..     124     152 .. 0.76
   4 ?    3.0   0.0      0.12   1.9e+02       2      28 ..     158     184 ..     157     187 .. 0.80

  Alignments for each domain:
  == domain 1  score: -0.1 bits;  conditional E-value: 1.2
                HHHHHHHHHHHHHHHHHHHHHHHHHHHH-T CS
       TPR_6  2 AlyklalsyrklgdtdkAlealerlikeYP 31
                A ++l+l ++    +++A++ + +  +  P
  KOO23496.1 15 AWLQLGLELQHE-APERARACFADAARADP 43
                778888878878.89999999998877666 PP

  == domain 2  score: 4.0 bits;  conditional E-value: 0.061
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHH-T CS
       TPR_6   2 AlyklalsyrklgdtdkAlealerlikeYP 31 
                 Al  l+ +++++g++  A + +e+ ++  P
  KOO23496.1  90 ALRGLGVAHENAGEWKVAAASYEDALSLVP 119
                 66679******99**********9987655 PP

  == domain 3  score: -0.2 bits;  conditional E-value: 1.4
                 HHHHHHHHHHHHHHHHHHHHHHH CS
       TPR_6   6 lalsyrklgdtdkAlealerlik 28 
                 la  + + g++ +A+e l+  + 
  KOO23496.1 128 LANVRSAIGEYVEAVEVLRAALA 150
                 4555556589********98875 PP

  == domain 4  score: 3.0 bits;  conditional E-value: 0.12
                 HHHHHHHHHHHHHHHHHHHHHHHHHHH CS
       TPR_6   2 AlyklalsyrklgdtdkAlealerlik 28 
                 A   la+++r lgd++ Al+     ++
  KOO23496.1 158 AHHGLARLLRHLGDAAGALRHAHAALE 184
                 56789******99*****997666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (711 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       418  (0.0233142); expected 358.6 (0.02)
Passed bias filter:                      269  (0.0150036); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                        14  (0.000780858); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.57u 0.26s 00:00:00.83 Elapsed: 00:00:00.43
# Mc/sec: 4997.87
//
Query:       KOO23497.1  [L=296]
Description: 26s proteasome non-ATPase regulatory subunit 8 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.2e-29  103.2   2.0    2.6e-28   98.8   2.0    2.2  1  CSN8_PSD8_EIF3K  CSN8/PSMD8/EIF3K family
  ------ inclusion threshold ------
      0.059   12.8   0.5       0.19   11.1   0.5    1.9  1  SAC3_GANP        SAC3/GANP family
       0.16   12.1   0.0       0.27   11.3   0.0    1.4  1  FtsJ             FtsJ-like methyltransferase


Domain annotation for each model (and alignments):
>> CSN8_PSD8_EIF3K  CSN8/PSMD8/EIF3K family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   98.8   2.0   4.3e-32   2.6e-28       6     142 ..     150     273 ..     145     275 .. 0.95

  Alignments for each domain:
  == domain 1  score: 98.8 bits;  conditional E-value: 4.3e-32
  CSN8_PSD8_EIF3K   6 lytniLlkaLtqndladfrlllkrlpaaiqqsdeeiqklltLetlLeeanyakfwstlksddlsadltadvagleelvReeiaklvgkaYesIs 99 
                      +++++Ll +L+qn++a+f+++l+++p+++q+ + +i++ ++Le++++e++y k+               ++++l ++vReeia++ +kaY+sI 
       KOO23497.1 150 ILGLNLLRLLAQNRIAEFHTELELIPTELQHANIYIKYPAQLEQHIMEGSYHKVLY-------------FMDMLVDTVREEIAECSEKAYTSIA 230
                      7899************************************************9998.............899********************** PP

  CSN8_PSD8_EIF3K 100 advlaelLglssdeelekfvkevgWeldaatvivpfnpeeakp 142
                      a++l+++L+l+s e+l++fv+++gW ld++tv ++++ ee+ +
       KOO23497.1 231 ASELQSMLMLTSGEALAEFVEQRGWRLDGKTVAFSKAEEEQPT 273
                      ***********************************88887654 PP

>> SAC3_GANP  SAC3/GANP family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.5   3.1e-05      0.19     234     291 ..     204     257 ..     101     259 .. 0.79

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 3.1e-05
                 HHHHGGGHHHHHHHHHHHHHHHS-TT---EEHHHHHHHTT-SSHHHHHHHHHHTT--E CS
   SAC3_GANP 234 acllerhfnevRrkalkalsraykskskkvpleeLaelLlfddeeeaeefceayglev 291
                   ++ + +++vR+++ ++  +ay    +++ ++eL+++L++ + e ++ef+e+ g ++
  KOO23497.1 204 LYFMDMLVDTVREEIAECSEKAY----TSIAASELQSMLMLTSGEALAEFVEQRGWRL 257
                 357889999**************....89***********************998765 PP

>> FtsJ  FtsJ-like methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   4.5e-05      0.27     109     161 ..      92     144 ..      15     147 .. 0.80

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 4.5e-05
                 HHCCCCHHHHCCHCCCCECCCEEEECCCHCCCHHHHHHHHHCCEEEEEEEE-S CS
        FtsJ 109 lqsqLllaalelalkllkpggtfvlkifrgeeteallkqlkkfFekvsvvkPk 161
                 +   L+   l +a ++l++g+ + +  ++ +++e++++qlk ++++ s+  P+
  KOO23497.1  92 VDRVLVHEELLVAREILEHGALLSIRQMDIPAFERYVAQLKVYYSDASILTPS 144
                 336799********************************************995 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (296 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       562  (0.0313459); expected 358.6 (0.02)
Passed bias filter:                      412  (0.0229795); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.45u 0.28s 00:00:00.73 Elapsed: 00:00:00.42
# Mc/sec: 2111.78
//
Query:       KOO23498.1  [L=81]
Description: hypothetical protein Ctob_002007, partial [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
  ------ inclusion threshold ------
      0.017   14.7   0.1      0.019   14.6   0.1    1.1  1  AAA_27           AAA domain
       0.15   12.3   0.1       0.19   11.9   0.1    1.2  1  RuBisCO_large_N  Ribulose bisphosphate carboxylase large chai


Domain annotation for each model (and alignments):
>> AAA_27  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.6   0.1   2.1e-06     0.019     127     166 ..      31      70 ..      14      78 .. 0.84

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 2.1e-06
      AAA_27 127 herLreGGealleaegelgqlLfeasaGlaslrevleaLe 166
                  +rL+eG +++ +++++++  Lf+a++++++ +e ++a  
  KOO23498.1  31 RARLEEGQQEIQRGHEDVAADLFAAKSSTSRWSEAQKASA 70 
                 468*************************999888776644 PP

>> RuBisCO_large_N  Ribulose bisphosphate carboxylase large chain, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.1   2.1e-05      0.19      30      59 ..      48      77 ..      38      80 .. 0.81

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 2.1e-05
  RuBisCO_large_N 30 eaaaavAaeSStgtwtevsttkdellkklk 59
                      aa+ +Aa+SSt  w+e ++ + e++++++
       KOO23498.1 48 VAADLFAAKSSTSRWSEAQKASAERVHEFR 77
                     356779*************99998888765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (81 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       700  (0.0390429); expected 358.6 (0.02)
Passed bias filter:                      469  (0.0261587); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.34u 0.27s 00:00:00.61 Elapsed: 00:00:00.39
# Mc/sec: 617.73
//
Query:       KOO23499.1  [L=758]
Description: tpr-like protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    8.6e-54  179.5   0.0    3.8e-08   33.4   0.0   13.9 15  PPR_2            PPR repeat family
    6.4e-43  142.0  17.2    2.9e-05   24.0   0.0   17.1 18  PPR              PPR repeat
    7.1e-40  134.9   0.0    3.6e-08   33.4   0.0   10.5 12  PPR_3            Pentatricopeptide repeat domain
    3.1e-31  106.8   0.0    2.5e-06   27.1   0.0   11.8 14  PPR_1            PPR repeat
    1.4e-29  103.0  17.4    4.3e-08   32.8   0.0    6.0  6  PPR_long         Pentacotripeptide-repeat region of PRORP
    6.5e-05   22.7  23.2        1.4    9.1   0.1   10.9 12  TPR_7            Tetratricopeptide repeat
    0.00014   22.0   3.5          2    8.7   0.0    5.0  5  ANAPC3           Anaphase-promoting complex, cyclosome, subun
    0.00088   19.7  30.2      0.065   13.7   0.3    8.3  8  TPR_19           Tetratricopeptide repeat
       0.01   15.7   0.0         44    3.9   0.0    5.3  7  Clathrin         Region in Clathrin and VPS
  ------ inclusion threshold ------
      0.042   14.6   0.3       0.31   11.8   0.1    2.5  2  Methyltransf_25  Methyltransferase domain
       0.12   12.1   0.1         39    4.1   0.0    3.3  4  MOZART1          Mitotic-spindle organizing gamma-tubulin rin
       0.79    9.5   5.8        1.6    8.5   0.2    4.0  5  TENA_THI-4       TENA/THI-4/PQQC family
        4.6    7.6  13.0         79    3.7   0.1    7.3  8  TPR_2            Tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> PPR_2  PPR repeat family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.0   0.0      0.18   2.5e+02      17      41 ..       9      33 ..       3      42 .. 0.79
   2 ?   -2.7   0.0       5.1     7e+03       8      34 ..      35      61 ..      28      62 .. 0.82
   3 !   33.4   0.0   2.8e-11   3.8e-08       4      49 ..      66     111 ..      63     112 .. 0.94
   4 !   28.7   0.0   7.8e-10   1.1e-06       1      48 [.      98     152 ..      98     154 .. 0.92
   5 !    7.9   0.0    0.0025       3.5       1      32 [.     140     181 ..     140     189 .. 0.82
   6 !   13.7   0.0     4e-05     0.055       2      26 ..     201     225 ..     200     229 .. 0.94
   7 !   12.6   0.0   8.7e-05      0.12       2      48 ..     270     316 ..     269     317 .. 0.93
   8 !   29.9   0.0   3.3e-10   4.5e-07       2      50 .]     305     353 ..     304     353 .. 0.96
   9 !    9.8   0.0   0.00064      0.88      20      48 ..     402     430 ..     398     432 .. 0.91
  10 ?    0.2   0.0      0.64   8.9e+02      35      48 ..     452     465 ..     447     486 .. 0.63
  11 !   17.0   0.0   3.6e-06     0.005      15      48 ..     508     541 ..     488     543 .. 0.80
  12 !   27.4   0.0     2e-09   2.8e-06       1      48 [.     529     576 ..     529     578 .. 0.94
  13 !   20.9   0.0   2.1e-07    0.0003       1      48 [.     564     611 ..     564     613 .. 0.97
  14 ?    0.8   0.0      0.42   5.9e+02      18      43 ..     653     678 ..     645     684 .. 0.82
  15 !    7.6   0.0    0.0031       4.3      11      47 ..     681     717 ..     673     719 .. 0.87

  Alignments for each domain:
  == domain 1  score: 2.0 bits;  conditional E-value: 0.18
       PPR_2 17 gkveeAfklfneMkkrglePnsyTy 41
                 ++e A++l++ M+  g + ++  y
  KOO23499.1  9 TDWEGALRLLERMEADGKPADAPAY 33
                5899*********999987776555 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 5.1
       PPR_2  8 tlIsglckkgkveeAfklfneMkkrgl 34
                +  ++++k+ ++ e   l+++ +k g+
  KOO23499.1 35 HAVAACAKADQPTEGRALLSKLQKAGV 61
                55678899999999999**99999997 PP

  == domain 3  score: 33.4 bits;  conditional E-value: 2.8e-11
       PPR_2   4 vtyNtlIsglckkgkveeAfklfneMkkrglePnsyTysilikglc 49 
                   yN ++s ++++++++eA+ l+ eM   g++P++++y+  ++++ 
  KOO23499.1  66 RGYNQVMSSFARQRRWSEALGLLREMCAAGVSPTVISYNAALSACS 111
                 57*****************************************986 PP

  == domain 4  score: 28.7 bits;  conditional E-value: 7.8e-10
       PPR_2   1 pdvvtyNtlIsglckkgkveeAfklfneMkkrgl.......ePnsyTysilikgl 48 
                 p v++yN+ +s++ k+g+++eA +l+ eM+  +         P++++ys++i+++
  KOO23499.1  98 PTVISYNAALSACSKAGRWNEATELLGEMEAGSSkgggsvpAPDVISYSTVISAC 152
                 89****************************977767789999***********96 PP

  == domain 5  score: 7.9 bits;  conditional E-value: 0.0025
       PPR_2   1 pdvvtyNtlIsglc..........kkgkveeAfklfneMkkr 32 
                 pdv++y t+Is++              ++e A++l++ M++ 
  KOO23499.1 140 PDVISYSTVISACQkastgtmgasASAALETALELLERMRRS 181
                 899999999999988888988887788899999999999885 PP

  == domain 6  score: 13.7 bits;  conditional E-value: 4e-05
       PPR_2   2 dvvtyNtlIsglckkgkveeAfklf 26 
                 +v+ty++ I++l+ +g++eeA+k +
  KOO23499.1 201 NVFTYTSAITALADAGRWEEALKTY 225
                 9**********************98 PP

  == domain 7  score: 12.6 bits;  conditional E-value: 8.7e-05
       PPR_2   2 dvvtyNtlIsglckkgkveeAfklfneMkkrglePnsyTysilikgl 48 
                  + ++N  I+  + + ++  A+ ++  M+  g++ n  Ty+  +++l
  KOO23499.1 270 RTSSFNMAINTAAGAQQPAAALAILRRMRTAGVRRNQLTYNAALSAL 316
                 5789*************************************999886 PP

  == domain 8  score: 29.9 bits;  conditional E-value: 3.3e-10
       PPR_2   2 dvvtyNtlIsglckkgkveeAfklfneMkkrglePnsyTysilikglck 50 
                 +  tyN+ +s+l   g++++A++l+ +M++  + P+ ++y+  + +++k
  KOO23499.1 305 NQLTYNAALSALEAGGRWQQALRLLRDMRRARVAPSLISYNLALGACAK 353
                 778*****************************************99986 PP

  == domain 9  score: 9.8 bits;  conditional E-value: 0.00064
       PPR_2  20 eeAfklfneMkkrglePnsyTysilikgl 48 
                 + A++l+ e ++ +l+P++ +ys  i +l
  KOO23499.1 402 DAAMELLLELQQLKLQPDVTSYSLAIAAL 430
                 78*********************999887 PP

  == domain 10  score: 0.2 bits;  conditional E-value: 0.64
       PPR_2  35 ePnsyTysilikgl 48 
                 +Pn +++s  i ++
  KOO23499.1 452 QPNGFSFSAAIAAC 465
                 56666666555443 PP

  == domain 11  score: 17.0 bits;  conditional E-value: 3.6e-06
       PPR_2  15 kkgkveeAfklfneMkkrglePnsyTysilikgl 48 
                 ++  v+ A++l+ +M + g  P+  +y+ l+k++
  KOO23499.1 508 TETGVDLALSLLGQMTEEGYAPDLLSYNALLKAC 541
                 5666899**************************6 PP

  == domain 12  score: 27.4 bits;  conditional E-value: 2e-09
       PPR_2   1 pdvvtyNtlIsglckkgkveeAfklfneMkkrglePnsyTysilikgl 48 
                 pd  +yN+l++++ ++ +++ A++ ++ Mk++++ P++++y++ + +l
  KOO23499.1 529 PDLLSYNALLKACERAADWDTAIETLSIMKSHKIVPDAISYTSAVGAL 576
                 7889**************************************987766 PP

  == domain 13  score: 20.9 bits;  conditional E-value: 2.1e-07
       PPR_2   1 pdvvtyNtlIsglckkgkveeAfklfneMkkrglePnsyTysilikgl 48 
                 pd ++y++   +l +++++e+A++l+  M   g++P++    +l+++l
  KOO23499.1 564 PDAISYTSAVGALGRAREWEKALSLWLTMLTDGISPDTLALRTLLRAL 611
                 899******************************************998 PP

  == domain 14  score: 0.8 bits;  conditional E-value: 0.42
       PPR_2  18 kveeAfklfneMkkrglePnsyTysi 43 
                 ++e A +  ++Mk  g+  ++  y  
  KOO23499.1 653 QPERAARYIEQMKCVGVDISAACYAQ 678
                 58999999*********999988865 PP

  == domain 15  score: 7.6 bits;  conditional E-value: 0.0031
       PPR_2  11 sglckkgkveeAfklfneMkkrglePnsyTysilikg 47 
                 s+++ +++++ A+ +f+     gl+P++ Ty  + ++
  KOO23499.1 681 SAHAAARDWRGALAVFKGLMADGLRPDAPTYQAVYSA 717
                 57778999***********************988766 PP

>> PPR  PPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.7   0.0      0.03        42      15      30 ..      10      25 ..       1      25 [. 0.85
   2 ?    4.8   0.0     0.028        39       7      31 .]      37      61 ..      32      61 .. 0.88
   3 !   20.0   0.0   4.1e-07   0.00056       3      31 .]      68      96 ..      67      96 .. 0.95
   4 !   24.0   0.0   2.1e-08   2.9e-05       1      27 [.     101     127 ..     101     129 .. 0.96
   5 ?    1.8   0.1      0.27   3.7e+02       1      12 [.     143     154 ..     143     156 .. 0.85
   6 ?    3.9   0.1     0.057        78      16      29 ..     168     181 ..     167     182 .. 0.88
   7 !   14.6   0.0   2.1e-05     0.029       1      23 [.     203     225 ..     203     230 .. 0.92
   8 ?   -2.5   0.0       5.9   8.1e+03       8      25 ..     244     261 ..     239     266 .. 0.77
   9 ?    1.2   0.0       0.4   5.5e+02       3      31 .]     274     302 ..     272     302 .. 0.74
  10 !   14.6   0.0   2.2e-05      0.03       2      30 ..     308     336 ..     307     337 .. 0.94
  11 ?    0.4   0.1       0.7   9.6e+02       1      19 [.     342     360 ..     342     361 .. 0.84
  12 ?   -0.3   0.0       1.2   1.6e+03       2      17 ..     422     437 ..     421     439 .. 0.91
  13 ?    5.5   0.0     0.016        23       1      30 [.     456     485 ..     456     486 .. 0.88
  14 ?    2.1   0.0       0.2   2.8e+02      17      30 ..     513     526 ..     512     527 .. 0.89
  15 !   12.6   0.0   8.9e-05      0.12       2      30 ..     533     561 ..     532     562 .. 0.94
  16 !   17.1   0.0   3.3e-06    0.0046       1      31 []     567     597 ..     567     597 .. 0.96
  17 ?   -0.1   0.0         1   1.4e+03       9      31 .]     647     669 ..     644     669 .. 0.81
  18 ?    3.4   0.0      0.08   1.1e+02       5      30 ..     678     703 ..     674     704 .. 0.84

  Alignments for each domain:
  == domain 1  score: 4.7 bits;  conditional E-value: 0.03
         PPR 15 kleeAlelfkeMkekG 30
                ++e Al+l+++M+ +G
  KOO23499.1 10 DWEGALRLLERMEADG 25
                89**********9887 PP

  == domain 2  score: 4.8 bits;  conditional E-value: 0.028
         PPR  7 IsgycknGkleeAlelfkeMkekGi 31
                + +++k+ ++ e   l+ ++++ G+
  KOO23499.1 37 VAACAKADQPTEGRALLSKLQKAGV 61
                789******************9996 PP

  == domain 3  score: 20.0 bits;  conditional E-value: 4.1e-07
         PPR  3 ynslIsgycknGkleeAlelfkeMkekGi 31
                yn ++s++++ ++++eAl l++eM   G+
  KOO23499.1 68 YNQVMSSFARQRRWSEALGLLREMCAAGV 96
                9***********************98886 PP

  == domain 4  score: 24.0 bits;  conditional E-value: 2.1e-08
         PPR   1 vtynslIsgycknGkleeAlelfkeMk 27 
                 ++yn+ +s+++k+G++ eA el+ eM+
  KOO23499.1 101 ISYNAALSACSKAGRWNEATELLGEME 127
                 69************************7 PP

  == domain 5  score: 1.8 bits;  conditional E-value: 0.27
         PPR   1 vtynslIsgyck 12 
                 ++y+++Is++ k
  KOO23499.1 143 ISYSTVISACQK 154
                 59*******966 PP

  == domain 6  score: 3.9 bits;  conditional E-value: 0.057
         PPR  16 leeAlelfkeMkek 29 
                 le Alel+++M+++
  KOO23499.1 168 LETALELLERMRRS 181
                 588********996 PP

  == domain 7  score: 14.6 bits;  conditional E-value: 2.1e-05
         PPR   1 vtynslIsgycknGkleeAlelf 23 
                 +ty+s I +++ +G++eeAl+ +
  KOO23499.1 203 FTYTSAITALADAGRWEEALKTY 225
                 69******************976 PP

  == domain 8  score: -2.5 bits;  conditional E-value: 5.9
         PPR   8 sgycknGkleeAlelfke 25 
                  + +  G++  A ++++e
  KOO23499.1 244 CAASVGGDWVTARSVLEE 261
                 566677999999999998 PP

  == domain 9  score: 1.2 bits;  conditional E-value: 0.4
         PPR   3 ynslIsgycknGkleeAlelfkeMkekGi 31 
                 +n  I+  + + ++  Al ++++M+  G+
  KOO23499.1 274 FNMAINTAAGAQQPAAALAILRRMRTAGV 302
                 5555555566667778*********9986 PP

  == domain 10  score: 14.6 bits;  conditional E-value: 2.2e-05
         PPR   2 tynslIsgycknGkleeAlelfkeMkekG 30 
                 tyn+ +s++   G+++ Al+l+++M++  
  KOO23499.1 308 TYNAALSALEAGGRWQQALRLLRDMRRAR 336
                 9*************************975 PP

  == domain 11  score: 0.4 bits;  conditional E-value: 0.7
         PPR   1 vtynslIsgycknGkleeA 19 
                 ++yn  + +++k+ k++ A
  KOO23499.1 342 ISYNLALGACAKAAKVSSA 360
                 59**********9777665 PP

  == domain 12  score: -0.3 bits;  conditional E-value: 1.2
         PPR   2 tynslIsgycknGkle 17 
                 +y+  I +++ +G++e
  KOO23499.1 422 SYSLAIAALSDAGQWE 437
                 8999**********98 PP

  == domain 13  score: 5.5 bits;  conditional E-value: 0.016
         PPR   1 vtynslIsgycknGkleeAlelfkeMkekG 30 
                 +++++ I ++ ++G++e  l lf  +++ G
  KOO23499.1 456 FSFSAAIAACERAGEWERLLALFAGLRKAG 485
                 5899****************9998777765 PP

  == domain 14  score: 2.1 bits;  conditional E-value: 0.2
         PPR  17 eeAlelfkeMkekG 30 
                 + Al+l+ +M e+G
  KOO23499.1 513 DLALSLLGQMTEEG 526
                 78**********99 PP

  == domain 15  score: 12.6 bits;  conditional E-value: 8.9e-05
         PPR   2 tynslIsgycknGkleeAlelfkeMkekG 30 
                 +yn+l++++ ++ +++ A+e +  Mk++ 
  KOO23499.1 533 SYNALLKACERAADWDTAIETLSIMKSHK 561
                 8*************************976 PP

  == domain 16  score: 17.1 bits;  conditional E-value: 3.3e-06
         PPR   1 vtynslIsgycknGkleeAlelfkeMkekGi 31 
                 ++y+s + ++++++++e+Al+l+  M+ +Gi
  KOO23499.1 567 ISYTSAVGALGRAREWEKALSLWLTMLTDGI 597
                 59*************************9997 PP

  == domain 17  score: -0.1 bits;  conditional E-value: 1
         PPR   9 gycknGkleeAlelfkeMkekGi 31 
                 +++   ++e A +++++Mk  G+
  KOO23499.1 647 ACAVGAQPERAARYIEQMKCVGV 669
                 666666899*********98775 PP

  == domain 18  score: 3.4 bits;  conditional E-value: 0.08
         PPR   5 slIsgycknGkleeAlelfkeMkekG 30 
                  l s+++ +++++ Al +fk +  +G
  KOO23499.1 678 QLASAHAAARDWRGALAVFKGLMADG 703
                 57799**************9887776 PP

>> PPR_3  Pentatricopeptide repeat domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.0       2.9   4.1e+03      24      45 ..       4      25 ..       3      28 .. 0.82
   2 !   29.4   0.0   4.4e-10     6e-07       2      61 ..      52     111 ..      51     113 .. 0.96
   3 ?    1.0   0.0      0.32   4.4e+02      48      60 ..     140     152 ..     138     155 .. 0.73
   4 ?   -3.6   0.0       9.1   1.2e+04      32      43 ..     169     180 ..     167     181 .. 0.84
   5 ?    4.2   0.0     0.034        47      14      39 ..     201     226 ..     199     234 .. 0.90
   6 ?    2.1   0.0      0.15     2e+02      25      60 ..     246     281 ..     229     284 .. 0.83
   7 !   33.4   0.0   2.6e-11   3.6e-08       2      61 ..     293     352 ..     292     354 .. 0.97
   8 ?    2.4   0.0      0.12   1.7e+02      32      59 ..     402     429 ..     400     433 .. 0.83
   9 ?    2.6   0.0       0.1   1.4e+02      10      45 ..     450     485 ..     441     498 .. 0.88
  10 !   29.9   0.0   3.2e-10   4.4e-07       2      61 ..     518     577 ..     517     579 .. 0.94
  11 ?    0.0   0.0      0.66   9.1e+02       6      41 ..     592     627 ..     587     630 .. 0.82
  12 !   11.5   0.0   0.00017      0.24       4      60 ..     662     718 ..     659     721 .. 0.93

  Alignments for each domain:
  == domain 1  score: -2.0 bits;  conditional E-value: 2.9
       PPR_3 24 ayanagnkklalevlermkkkg 45
                a+ ++ + + al+ lerm+ +g
  KOO23499.1  4 AASQVTDWEGALRLLERMEADG 25
                5677888899999*****9876 PP

  == domain 2  score: 29.4 bits;  conditional E-value: 4.4e-10
       PPR_3   2 ilremerkgikldvvtYthLLtayanagnkklalevlermkkkgikPtvvtyNailgvig 61 
                 +l ++++ g+  +v +Y+  ++ +a+++    al  l +m   g++Ptv++yNa l+++ 
  KOO23499.1  52 LLSKLQKAGVMAEVRGYNQVMSSFARQRRWSEALGLLREMCAAGVSPTVISYNAALSACS 111
                 78999*****************************************************96 PP

  == domain 3  score: 1.0 bits;  conditional E-value: 0.32
       PPR_3  48 PtvvtyNailgvi 60 
                 P v++y+ +++++
  KOO23499.1 140 PDVISYSTVISAC 152
                 7788888888877 PP

  == domain 4  score: -3.6 bits;  conditional E-value: 9.1
       PPR_3  32 klalevlermkk 43 
                 + ale lerm+ 
  KOO23499.1 169 ETALELLERMRR 180
                 67999*****85 PP

  == domain 5  score: 4.2 bits;  conditional E-value: 0.034
       PPR_3  14 dvvtYthLLtayanagnkklalevle 39 
                 +v tYt+ +ta a ag  + al++ +
  KOO23499.1 201 NVFTYTSAITALADAGRWEEALKTYA 226
                 9***************9999998865 PP

  == domain 6  score: 2.1 bits;  conditional E-value: 0.15
       PPR_3  25 yanagnkklalevlermkkkgikPtvvtyNailgvi 60 
                 + + g+   a  vle+   +g++P   ++N+ +++ 
  KOO23499.1 246 ASVGGDWVTARSVLEEALLVGVTPRTSSFNMAINTA 281
                 5566777789999999999***********999875 PP

  == domain 7  score: 33.4 bits;  conditional E-value: 2.6e-11
       PPR_3   2 ilremerkgikldvvtYthLLtayanagnkklalevlermkkkgikPtvvtyNailgvig 61 
                 ilr m   g++ +  tY++ L+a    g  + al+ l  m+  +++P++++yN  lg++ 
  KOO23499.1 293 ILRRMRTAGVRRNQLTYNAALSALEAGGRWQQALRLLRDMRRARVAPSLISYNLALGACA 352
                 899*******************************************************96 PP

  == domain 8  score: 2.4 bits;  conditional E-value: 0.12
       PPR_3  32 klalevlermkkkgikPtvvtyNailgv 59 
                 ++a+e l ++++ +++P v +y+  + +
  KOO23499.1 402 DAAMELLLELQQLKLQPDVTSYSLAIAA 429
                 6799999999999999999999977665 PP

  == domain 9  score: 2.6 bits;  conditional E-value: 0.1
       PPR_3  10 gikldvvtYthLLtayanagnkklalevlermkkkg 45 
                  +++++  + + + a+ +ag+ +++l  ++ ++k g
  KOO23499.1 450 LLQPNGFSFSAAIAACERAGEWERLLALFAGLRKAG 485
                 589**********************99999988876 PP

  == domain 10  score: 29.9 bits;  conditional E-value: 3.2e-10
       PPR_3   2 ilremerkgikldvvtYthLLtayanagnkklalevlermkkkgikPtvvtyNailgvig 61 
                 +l  m ++g  +d+  Y++LL+a+ +a + + a e+l  mk  +i P  ++y +  g+ g
  KOO23499.1 518 LLGQMTEEGYAPDLLSYNALLKACERAADWDTAIETLSIMKSHKIVPDAISYTSAVGALG 577
                 788999**********************************************99888876 PP

  == domain 11  score: 0.0 bits;  conditional E-value: 0.66
       PPR_3   6 merkgikldvvtYthLLtayanagnkklalevlerm 41 
                 m  +gi +d     +LL+a   a     al v++ +
  KOO23499.1 592 MLTDGISPDTLALRTLLRALSGAAQWPTALAVFDAV 627
                 6679**************988887777888887765 PP

  == domain 12  score: 11.5 bits;  conditional E-value: 0.00017
       PPR_3   4 remerkgikldvvtYthLLtayanagnkklalevlermkkkgikPtvvtyNailgvi 60 
                 + m+  g+ ++   Y  L +a a a++ + al v++ +  +g++P   ty a+ +++
  KOO23499.1 662 EQMKCVGVDISAACYAQLASAHAAARDWRGALAVFKGLMADGLRPDAPTYQAVYSAC 718
                 6788889999999**************************************999988 PP

>> PPR_1  PPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.4   0.1      0.68   9.3e+02      24      34 .]      12      22 ..      10      22 .. 0.85
   2 !   12.2   0.0   8.2e-05      0.11       2      33 ..      60      91 ..      59      92 .. 0.90
   3 !   27.1   0.0   1.8e-09   2.5e-06       2      34 .]      95     127 ..      94     127 .. 0.97
   4 !    8.1   0.0    0.0016       2.1       5      16 ..     140     151 ..     138     154 .. 0.91
   5 ?    1.3   0.1      0.21   2.9e+02      23      34 .]     168     179 ..     168     179 .. 0.90
   6 !   13.9   0.0   2.4e-05     0.033       5      28 ..     200     223 ..     198     225 .. 0.94
   7 !    7.6   0.0    0.0023       3.1       2      34 .]     301     333 ..     300     333 .. 0.93
   8 ?   -2.2   0.0       2.5   3.5e+03       4      26 ..     338     360 ..     336     361 .. 0.74
   9 ?    0.6   0.0      0.35   4.8e+02       3      21 ..     416     434 ..     414     438 .. 0.78
  10 ?   -2.8   0.0       4.1   5.6e+03      23      34 .]     512     523 ..     512     523 .. 0.89
  11 !    9.6   0.0   0.00054      0.74       2      34 .]     526     558 ..     525     558 .. 0.93
  12 !    7.4   0.0    0.0025       3.4       3      30 ..     562     589 ..     560     592 .. 0.91
  13 ?   -2.8   0.0       4.1   5.6e+03       1      15 [.     595     609 ..     595     611 .. 0.76
  14 ?   -1.2   0.0       1.2   1.7e+03       1      10 [.     702     711 ..     702     717 .. 0.89

  Alignments for each domain:
  == domain 1  score: -0.4 bits;  conditional E-value: 0.68
                HHHHHHHHHHH CS
       PPR_1 24 deAfelfdeMe 34
                + A++l+++Me
  KOO23499.1 12 EGALRLLERME 22
                569*******7 PP

  == domain 2  score: 12.2 bits;  conditional E-value: 8.2e-05
                S----HHHHHHHHHHHHHTS-HHHHHHHHHHH CS
       PPR_1  2 GlkPdvvTYNtLIdGlCkaGrvdeAfelfdeM 33
                G+   v  YN + +++ ++ r  eA+ l++eM
  KOO23499.1 60 GVMAEVRGYNQVMSSFARQRRWSEALGLLREM 91
                56667888************************ PP

  == domain 3  score: 27.1 bits;  conditional E-value: 1.8e-09
                 S----HHHHHHHHHHHHHTS-HHHHHHHHHHHH CS
       PPR_1   2 GlkPdvvTYNtLIdGlCkaGrvdeAfelfdeMe 34 
                 G++P+v++YN  ++++ kaGr +eA el+ eMe
  KOO23499.1  95 GVSPTVISYNAALSACSKAGRWNEATELLGEME 127
                 99******************************7 PP

  == domain 4  score: 8.1 bits;  conditional E-value: 0.0016
                 --HHHHHHHHHH CS
       PPR_1   5 PdvvTYNtLIdG 16 
                 Pdv++Y+t+I++
  KOO23499.1 140 PDVISYSTVISA 151
                 **********97 PP

  == domain 5  score: 1.3 bits;  conditional E-value: 0.21
                 HHHHHHHHHHHH CS
       PPR_1  23 vdeAfelfdeMe 34 
                 ++ A+el+++M+
  KOO23499.1 168 LETALELLERMR 179
                 678********7 PP

  == domain 6  score: 13.9 bits;  conditional E-value: 2.4e-05
                 --HHHHHHHHHHHHHTS-HHHHHH CS
       PPR_1   5 PdvvTYNtLIdGlCkaGrvdeAfe 28 
                  +v+TY++ I +l  aGr +eA++
  KOO23499.1 200 ANVFTYTSAITALADAGRWEEALK 223
                 59********************87 PP

  == domain 7  score: 7.6 bits;  conditional E-value: 0.0023
                 S----HHHHHHHHHHHHHTS-HHHHHHHHHHHH CS
       PPR_1   2 GlkPdvvTYNtLIdGlCkaGrvdeAfelfdeMe 34 
                 G+  +  TYN  +++l   Gr   A++l+++M+
  KOO23499.1 301 GVRRNQLTYNAALSALEAGGRWQQALRLLRDMR 333
                 7888999*************************7 PP

  == domain 8  score: -2.2 bits;  conditional E-value: 2.5
                 ---HHHHHHHHHHHHHTS-HHHH CS
       PPR_1   4 kPdvvTYNtLIdGlCkaGrvdeA 26 
                  P  ++YN  + ++ ka +v  A
  KOO23499.1 338 APSLISYNLALGACAKAAKVSSA 360
                 6999****877777777776665 PP

  == domain 9  score: 0.6 bits;  conditional E-value: 0.35
                 ----HHHHHHHHHHHHHTS CS
       PPR_1   3 lkPdvvTYNtLIdGlCkaG 21 
                 l+Pdv +Y+  I +l  aG
  KOO23499.1 416 LQPDVTSYSLAIAALSDAG 434
                 89******98887776655 PP

  == domain 10  score: -2.8 bits;  conditional E-value: 4.1
                 HHHHHHHHHHHH CS
       PPR_1  23 vdeAfelfdeMe 34 
                 vd A+ l+ +M+
  KOO23499.1 512 VDLALSLLGQMT 523
                 7889*******5 PP

  == domain 11  score: 9.6 bits;  conditional E-value: 0.00054
                 S----HHHHHHHHHHHHHTS-HHHHHHHHHHHH CS
       PPR_1   2 GlkPdvvTYNtLIdGlCkaGrvdeAfelfdeMe 34 
                 G+ Pd  +YN L++++ +a + d A+e ++ M+
  KOO23499.1 526 GYAPDLLSYNALLKACERAADWDTAIETLSIMK 558
                 899************************999885 PP

  == domain 12  score: 7.4 bits;  conditional E-value: 0.0025
                 ----HHHHHHHHHHHHHTS-HHHHHHHH CS
       PPR_1   3 lkPdvvTYNtLIdGlCkaGrvdeAfelf 30 
                 ++Pd+++Y++ + +l +a + ++A+ l+
  KOO23499.1 562 IVPDAISYTSAVGALGRAREWEKALSLW 589
                 79**********************9875 PP

  == domain 13  score: -2.8 bits;  conditional E-value: 4.1
                 SS----HHHHHHHHH CS
       PPR_1   1 kGlkPdvvTYNtLId 15 
                 +G++Pd+    tL+ 
  KOO23499.1 595 DGISPDTLALRTLLR 609
                 599***987777765 PP

  == domain 14  score: -1.2 bits;  conditional E-value: 1.2
                 SS----HHHH CS
       PPR_1   1 kGlkPdvvTY 10 
                 +Gl Pd+ TY
  KOO23499.1 702 DGLRPDAPTY 711
                 599******9 PP

>> PPR_long  Pentacotripeptide-repeat region of PRORP
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.7   0.1   2.8e-10   3.8e-07      72     183 ..      12     123 ..       2     128 .. 0.91
   2 ?    0.3   0.1      0.28   3.8e+02      48      84 ..     144     183 ..     141     200 .. 0.74
   3 !   15.3   0.1   6.8e-06    0.0094      84     189 ..     230     335 ..     206     340 .. 0.86
   4 !   24.9   0.7   8.3e-09   1.1e-05      28     197 ..     323     492 ..     321     495 .. 0.82
   5 !   32.8   0.0   3.1e-11   4.3e-08      13     169 ..     457     610 ..     445     617 .. 0.91
   6 !   13.9   0.7   1.8e-05     0.025      29     144 ..     619     727 ..     612     739 .. 0.80

  Alignments for each domain:
  == domain 1  score: 29.7 bits;  conditional E-value: 2.8e-10
                 HHHHHHHHHHHHTT----HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-S---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHCT----HHHHHHHHHHH CS
    PPR_long  72 argfevfeamkakgvspnEatvtalarlaaakedgdlafelvkemekagvsPrLRsyaPaLaayckagdadkaleveehlkasgveleEaelaaLLkvs 170
                 + +++  e+m+a+g ++  +++   +  +a++++  +  +l ++++kagv    R y+ ++ ++ ++++   al     + a+gv+++   ++a L ++
  KOO23499.1  12 EGALRLLERMEADGKPADAPAYGHAVAACAKADQPTEGRALLSKLQKAGVMAEVRGYNQVMSSFARQRRWSEALGLLREMCAAGVSPTVISYNAALSAC 110
                 5568999***********99**999999*********************************************************************** PP

                 HHTT-HHHHHHHH CS
    PPR_long 171 akagredkvYelL 183
                  kagr +   elL
  KOO23499.1 111 SKAGRWNEATELL 123
                 ****987766665 PP

  == domain 2  score: 0.3 bits;  conditional E-value: 0.28
                 HHHHHHHHHHHC.HCSTT.THHHHHHHHHHHHHHHHH..T CS
    PPR_long  48 hynvllylcskaeaases.kknkalargfevfeamka..k 84 
                 +y++++  c ka++ +     + al++++e  e+m+   k
  KOO23499.1 144 SYSTVISACQKASTGTMGaSASAALETALELLERMRRssK 183
                 69999999*9999877662445678999999999987423 PP

  == domain 3  score: 15.3 bits;  conditional E-value: 6.8e-06
                 TT----HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-S---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHCT----HHHHHHHHHHHHHTT-HHHHHHH CS
    PPR_long  84 kgvspnEatvtalarlaaakedgdlafelvkemekagvsPrLRsyaPaLaayckagdadkaleveehlkasgveleEaelaaLLkvsakagredkvYel 182
                 + v+ n+a+v a +  a+  +d  +a ++ +e   +gv+Pr  s++ a+ +   a++   al++  +++++gv+ +   ++a L +  + gr ++  +l
  KOO23499.1 230 DDVEKNDAIVNAAVCAASVGGDWVTARSVLEEALLVGVTPRTSSFNMAINTAAGAQQPAAALAILRRMRTAGVRRNQLTYNAALSALEAGGRWQQALRL 328
                 6788999999998877777788889*******999***********************************************99999999999999999 PP

                 HHHHHHH CS
    PPR_long 183 Lhklrea 189
                 L  +r+a
  KOO23499.1 329 LRDMRRA 335
                 9988875 PP

  == domain 4  score: 24.9 bits;  conditional E-value: 8.3e-09
                 HHHHHHHHHHHHSSS---HHHHHHHHHHHHHC.HCSTTTHH.HHHHHHHHHHHHHHHTT----HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-S---H CS
    PPR_long  28 aaAlelydkavaegvrlaqyhynvllylcskaeaaseskkn.kalargfevfeamkakgvspnEatvtalarlaaakedgdlafelvkemekagvsPrL 125
                 ++Al l  ++ +  v+ +  +yn  l  c+ka++ s+ + +  +++++    + +++++vs++  + t +  l ++   +d a el  e+++ +++P  
  KOO23499.1 323 QQALRLLRDMRRARVAPSLISYNLALGACAKAAKVSSATVSsAKVSSATVSSATVSSTKVSSATVSSTKVSPLDSS-TAADAAMELLLELQQLKLQPDV 420
                 589999999***********************87665544303344444445556667777777777777777665.569******************* PP

                 HHHHHHHHHHHHTT-HHHHHHHHHHHHHCT----HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTSSB-HHH CS
    PPR_long 126 RsyaPaLaayckagdadkaleveehlkasgveleEaelaaLLkvsakagredkvYelLhklreavrqvsest 197
                  sy+ a+aa+++ag+ ++        +a  ++++   ++a + ++ +ag+ +++ +l+  lr+a   v +s 
  KOO23499.1 421 TSYSLAIAALSDAGQWERLGGLLGTTQAELLQPNGFSFSAAIAACERAGEWERLLALFAGLRKAGGAVDRSL 492
                 ******************999999999999999999999999999999999999999998888877776665 PP

  == domain 5  score: 32.8 bits;  conditional E-value: 3.1e-11
                 HHHHHHHHHHHHT-HHHHHHHHHHHHHSSS---HHHHHHHHHHHHHC.HCSTTTHHHHHHHHHHHHHHHHHTT----HHHHHHHHHHHHHTT-HHHHHH CS
    PPR_long  13 elrrqldkCskekDaaaAlelydkavaegvrlaqyhynvllylcskaeaaseskknkalargfevfeamkakgvspnEatvtalarlaaakedgdlafe 111
                 +++ ++  C +++  ++ l+l+    + g ++    +n+ l   + a  ++    +++++ ++    +m+++g +p   ++ al + +  ++d d+a e
  KOO23499.1 457 SFSAAIAACERAGEWERLLALFAGLRKAGGAVDRSLWNAALSAAACA--PD-AGTETGVDLALSLLGQMTEEGYAPDLLSYNALLKACERAADWDTAIE 552
                 57789999*******************9999*******998766555..33.344679***************************************** PP

                 HHHHHHHH-S---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHCT----HHHHHHHHHH CS
    PPR_long 112 lvkemekagvsPrLRsyaPaLaayckagdadkaleveehlkasgveleEaelaaLLkv 169
                   + m++ ++ P   sy  a  a+ +a++ +kal     + + g++++   l +LL++
  KOO23499.1 553 TLSIMKSHKIVPDAISYTSAVGALGRAREWEKALSLWLTMLTDGISPDTLALRTLLRA 610
                 *******************************************************996 PP

  == domain 6  score: 13.9 bits;  conditional E-value: 1.8e-05
                 HHHHHHHHHHH.SS.S---HHHHHHHHHHHHHC.HCSTTTHHHHHHHHHHHHHHHHHTT----HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-S---H CS
    PPR_long  29 aAlelydkava.eg.vrlaqyhynvllylcskaeaaseskknkalargfevfeamkakgvspnEatvtalarlaaakedgdlafelvkemekagvsPrL 125
                 +Al+++d++++ e+    ++  y++ l  c+ ++++         +r+ +  e+mk  gv+ + a ++ la   aa++d   a ++ k + + g+ P  
  KOO23499.1 619 TALAVFDAVANsEDaHVCTTPVYEQALTACAVGAQP---------ERAARYIEQMKCVGVDISAACYAQLASAHAAARDWRGALAVFKGLMADGLRPDA 708
                 799999999873443455667899999999777544.........356788999999999999999999999999999999999999999999999999 PP

                 HHHHHHHHHHHHTT-HHHH CS
    PPR_long 126 RsyaPaLaayckagdadka 144
                  +y+ +  a  +ag  + a
  KOO23499.1 709 PTYQAVYSACDQAGAQEEA 727
                 9999888888777766665 PP

>> TPR_7  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.0   0.0     0.094   1.3e+02       7      24 ..       3      20 ..       1      30 [. 0.86
   2 ?    2.5   0.0      0.13   1.8e+02       9      24 ..      75      90 ..      73     101 .. 0.83
   3 ?    1.0   0.0       0.4   5.6e+02       7      23 ..     108     124 ..     102     129 .. 0.85
   4 ?   -3.2   0.0       8.5   1.2e+04      16      24 ..     169     177 ..     168     179 .. 0.85
   5 ?    2.0   0.0      0.18   2.5e+02      10      22 ..     213     225 ..     208     227 .. 0.83
   6 ?    1.0   0.0      0.41   5.7e+02      11      26 ..     247     263 ..     237     271 .. 0.73
   7 ?    1.3   0.1      0.33   4.5e+02       8      23 ..     315     330 ..     308     338 .. 0.83
   8 ?    2.1   0.0      0.17   2.4e+02       8      22 ..     464     478 ..     461     482 .. 0.89
   9 ?    4.6   0.1     0.027        38       1      21 [.     533     553 ..     533     554 .. 0.88
  10 ?   -1.5   0.0       2.5   3.5e+03      11      21 ..     578     588 ..     575     593 .. 0.84
  11 ?   -2.0   0.0       3.7   5.1e+03      15      24 ..     654     663 ..     652     667 .. 0.86
  12 !    9.1   0.1     0.001       1.4       1      24 [.     675     698 ..     675     707 .. 0.89

  Alignments for each domain:
  == domain 1  score: 3.0 bits;  conditional E-value: 0.094
       TPR_7  7 rlysrlGdyeeAielyeq 24
                ++ s++ d+e A++l+e+
  KOO23499.1  3 QAASQVTDWEGALRLLER 20
                6778999**********9 PP

  == domain 2  score: 2.5 bits;  conditional E-value: 0.13
       TPR_7  9 ysrlGdyeeAielyeq 24
                + r+++++eA++l+++
  KOO23499.1 75 FARQRRWSEALGLLRE 90
                679**********998 PP

  == domain 3  score: 1.0 bits;  conditional E-value: 0.4
       TPR_7   7 rlysrlGdyeeAielye 23 
                 +++s+ G++ eA el+ 
  KOO23499.1 108 SACSKAGRWNEATELLG 124
                 689*********99875 PP

  == domain 4  score: -3.2 bits;  conditional E-value: 8.5
       TPR_7  16 eeAielyeq 24 
                 e+A+el+e+
  KOO23499.1 169 ETALELLER 177
                 789999998 PP

  == domain 5  score: 2.0 bits;  conditional E-value: 0.18
       TPR_7  10 srlGdyeeAiely 22 
                  + G++eeA++ y
  KOO23499.1 213 ADAGRWEEALKTY 225
                 578*******998 PP

  == domain 6  score: 1.0 bits;  conditional E-value: 0.41
       TPR_7  11 r.lGdyeeAielyeqsL 26 
                 +  Gd+ +A +++e++L
  KOO23499.1 247 SvGGDWVTARSVLEEAL 263
                 5569***********66 PP

  == domain 7  score: 1.3 bits;  conditional E-value: 0.33
       TPR_7   8 lysrlGdyeeAielye 23 
                 + ++ G++++A++l++
  KOO23499.1 315 ALEAGGRWQQALRLLR 330
                 566679******9986 PP

  == domain 8  score: 2.1 bits;  conditional E-value: 0.17
       TPR_7   8 lysrlGdyeeAiely 22 
                 +++r G++e+++ l+
  KOO23499.1 464 ACERAGEWERLLALF 478
                 699********9998 PP

  == domain 9  score: 4.6 bits;  conditional E-value: 0.027
       TPR_7   1 aLlnLarlysrlGdyeeAiel 21 
                 ++++L  +++r  d+++Aie 
  KOO23499.1 533 SYNALLKACERAADWDTAIET 553
                 57888899***********96 PP

  == domain 10  score: -1.5 bits;  conditional E-value: 2.5
       TPR_7  11 rlGdyeeAiel 21 
                 r +++e+A++l
  KOO23499.1 578 RAREWEKALSL 588
                 6789****986 PP

  == domain 11  score: -2.0 bits;  conditional E-value: 3.7
       TPR_7  15 yeeAielyeq 24 
                  e+A+++ eq
  KOO23499.1 654 PERAARYIEQ 663
                 589******9 PP

  == domain 12  score: 9.1 bits;  conditional E-value: 0.001
       TPR_7   1 aLlnLarlysrlGdyeeAielyeq 24 
                 ++ +La+++ + +d++ A+ +++ 
  KOO23499.1 675 CYAQLASAHAAARDWRGALAVFKG 698
                 799******************997 PP

>> ANAPC3  Anaphase-promoting complex, cyclosome, subunit 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   0.0       1.2   1.6e+03      38      81 ..      10      55 ..       7      56 .. 0.73
   2 !    8.7   0.0    0.0014         2      35      81 ..      77     125 ..      73     126 .. 0.87
   3 ?    1.9   0.0      0.19   2.6e+02      25      81 ..     201     261 ..     165     262 .. 0.58
   4 !    7.2   0.0    0.0044         6      37      80 ..     285     330 ..     283     332 .. 0.91
   5 ?   -1.6   0.2       2.3   3.2e+03      38      77 ..     653     694 ..     616     699 .. 0.56

  Alignments for each domain:
  == domain 1  score: -0.6 bits;  conditional E-value: 1.2
                -HHHHHHHHHCT.SHHHC-HHHHHHHH.HHHHHTT-HHHHHHHH-S CS
      ANAPC3 38 qykrAyellrka.klnskslgcrylfA.qcllkLkkyeeAiaaLek 81
                +++ A++ll+++    +   + +y +A  ++ k ++  e++a+L+k
  KOO23499.1 10 DWEGALRLLERMeADGKPADAPAYGHAvAACAKADQPTEGRALLSK 55
                5777888888884444444467787886778899999999999987 PP

  == domain 2  score: 8.7 bits;  conditional E-value: 0.0014
                 HTT-HHHHHHHHHCT.SHHHC-HHHHHHHH.HHHHHTT-HHHHHHHH-S CS
      ANAPC3  35 lngqykrAyellrka.klnskslgcrylfA.qcllkLkkyeeAiaaLek 81 
                 ++ ++ +A+ llr++     +   + y +A  ++ k ++++eA  +L++
  KOO23499.1  77 RQRRWSEALGLLREMcAAGVSPTVISYNAAlSACSKAGRWNEATELLGE 125
                 7899***********99988889*******55566**********9986 PP

  == domain 3  score: 1.9 bits;  conditional E-value: 0.19
                 HHHHH...HHHHHHTT-HHHHHHHHHCTSHHHC-HHHHHHHHHHHHHT.T-HHHHHHHH-S CS
      ANAPC3  25 dayll...AlclylngqykrAyellrkaklnskslgcrylfAqcllkL.kkyeeAiaaLek 81 
                 +++ +     +l  +g++++A++ + +   + +   + + +A c+    + +  A+++Le+
  KOO23499.1 201 NVFTYtsaITALADAGRWEEALKTYASIPDDVEKNDAIVNAAVCAASVgGDWVTARSVLEE 261
                 4555444456777788888888888888444444455566666666556777777777765 PP

  == domain 4  score: 7.2 bits;  conditional E-value: 0.0044
                 T-HHHHHHHHHCT.SHHHC-HHHHHHHHHHHHHT.T-HHHHHHHH- CS
      ANAPC3  37 gqykrAyellrka.klnskslgcrylfAqcllkL.kkyeeAiaaLe 80 
                 +q   A+ +lr++     +  +  y +A ++l+  +++++A+++L 
  KOO23499.1 285 QQPAAALAILRRMrTAGVRRNQLTYNAALSALEAgGRWQQALRLLR 330
                 57889********99999999***********998********996 PP

  == domain 5  score: -1.6 bits;  conditional E-value: 2.3
                 -HHHHHHHHHCTSHHHC-H..HHHHHHHHHHHHTT-HHHHHH CS
      ANAPC3  38 qykrAyellrkaklnsksl..gcrylfAqcllkLkkyeeAia 77 
                 q +rA ++++++k  + ++  +c   +A +  +   +  A+a
  KOO23499.1 653 QPERAARYIEQMKCVGVDIsaACYAQLASAHAAARDWRGALA 694
                 467777777777333333333444444444445455555555 PP

>> TPR_19  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.7   0.3   4.7e-05     0.065       6      54 ..      10      59 ..       6      67 .. 0.91
   2 ?    3.0   0.0      0.11   1.5e+02       4      49 ..      78     124 ..      75     128 .. 0.71
   3 ?    6.2   0.1     0.011        15      33      57 ..     210     234 ..     164     243 .. 0.80
   4 !    7.0   2.5    0.0059       8.2       3      53 ..     283     334 ..     281     343 .. 0.76
   5 ?    0.7   0.1      0.57   7.9e+02      10      49 ..     515     555 ..     512     560 .. 0.79
   6 ?    1.2   0.0      0.38   5.3e+02      20      55 ..     595     631 ..     568     646 .. 0.75
   7 ?    0.3   0.3      0.75     1e+03      25      55 ..     673     703 ..     653     720 .. 0.61
   8 ?    0.5   0.4      0.63   8.7e+02       3      48 ..     685     731 ..     683     734 .. 0.72

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 4.7e-05
      TPR_19  6 dyaeAlalleqa.lqedpknaearllLAeallalgqldeAealLdalpee 54
                d + Al+lle++  + +p +a a    + a+ ++ q++e +alL++l+++
  KOO23499.1 10 DWEGALRLLERMeADGKPADAPAYGHAVAACAKADQPTEGRALLSKLQKA 59
                6789*******97788999***************************9987 PP

  == domain 2  score: 3.0 bits;  conditional E-value: 0.11
      TPR_19   4 egdyaeAlalleq..alqedpk..naearllLAeallalgqldeAealLd 49 
                 + +  eAl ll++  a   +p   + +a+l    a+ ++g+++eA +lL 
  KOO23499.1  78 QRRWSEALGLLREmcAAGVSPTviSYNAAL---SACSKAGRWNEATELLG 124
                 566778888888833334477676555555...7899********99995 PP

  == domain 3  score: 6.2 bits;  conditional E-value: 0.011
      TPR_19  33 eallalgqldeAealLdalpeedpd 57 
                  al  +g+++eA ++ + +p++  +
  KOO23499.1 210 TALADAGRWEEALKTYASIPDDVEK 234
                 578889*************998665 PP

  == domain 4  score: 7.0 bits;  conditional E-value: 0.0059
      TPR_19   3 aegdyaeAlalleqalqedpk.naearllLAeallalgqldeAealLdalpe 53 
                  ++++a+Ala+l+++ ++    n+    +   al a g++++A +lL +  +
  KOO23499.1 283 GAQQPAAALAILRRMRTAGVRrNQLTYNAALSALEAGGRWQQALRLLRDMRR 334
                 689************8775551555555556666667*********987665 PP

  == domain 5  score: 0.7 bits;  conditional E-value: 0.57
      TPR_19  10 Alalleqalqe.dpknaearllLAeallalgqldeAealLd 49 
                 Al+ll q+ +e ++ ++    +L +a+  + ++d A+++L+
  KOO23499.1 515 ALSLLGQMTEEgYAPDLLSYNALLKACERAADWDTAIETLS 555
                 8999999865545556666668999************9995 PP

  == domain 6  score: 1.2 bits;  conditional E-value: 0.38
      TPR_19  20 e..dpknaearllLAeallalgqldeAealLdalpeed 55 
                 +  +p+ +++r  L +al  + q+  A a+ da+ +++
  KOO23499.1 595 DgiSPDTLALRT-LLRALSGAAQWPTALAVFDAVANSE 631
                 244787777777.999*************999998876 PP

  == domain 7  score: 0.3 bits;  conditional E-value: 0.75
      TPR_19  25 aearllLAeallalgqldeAealLdalpeed 55 
                 a+  ++LA a+ a+ ++  A a+ + l+++ 
  KOO23499.1 673 AACYAQLASAHAAARDWRGALAVFKGLMADG 703
                 4444588888888888888888888777664 PP

  == domain 8  score: 0.5 bits;  conditional E-value: 0.63
      TPR_19   3 aegdyaeAlalleqalqe.....dpknaearllLAeallalgqldeAealL 48 
                 a+ d   Ala ++ ++++     +p ++++      a+ ++g  +eA+alL
  KOO23499.1 685 AARDWRGALAVFKGLMADglrpdAPTYQAVYS----ACDQAGAQEEAKALL 731
                 67888999999999877766444444555544....888888888888888 PP

>> Clathrin  Region in Clathrin and VPS
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.9   0.0     0.032        44      14      95 ..      37     125 ..      30     128 .. 0.80
   2 ?   -2.2   0.0       2.4   3.4e+03      77      95 ..     209     227 ..     199     242 .. 0.52
   3 ?   -2.4   0.0       2.9   4.1e+03     108     130 ..     270     292 ..     260     298 .. 0.78
   4 ?   -1.9   0.0         2   2.7e+03     101     134 ..     311     344 ..     303     350 .. 0.60
   5 ?    0.1   0.0       0.5   6.8e+02      74      96 ..     459     481 ..     414     501 .. 0.77
   6 ?    2.9   0.0     0.064        89     102     135 ..     537     570 ..     531     576 .. 0.82
   7 ?   -2.8   0.0       3.9   5.3e+03      11      31 ..     712     732 ..     710     736 .. 0.70

  Alignments for each domain:
  == domain 1  score: 3.9 bits;  conditional E-value: 0.032
                 HHHHHCTT-HHHHCHHHCCHHHCHTS--HHHHHHHHHHHHHTT-HHHHHHTTS.......S---S-TTHHHHHHHT-SSHHHHHHHHHT CS
    Clathrin  14 vklfeeaglleelleyLekvlkedskenpalqtallelyakyddpqeleeflk.......knnnydlekvaklcekadlyeeavilykk 95 
                 v ++ +a++++e   +L k++k + ++++  +++++   a+ ++ +e++  l+       + + +  + +++ c+ka+ ++ea +l+  
  KOO23499.1  37 VAACAKADQPTEGRALLSKLQKAGVMAEVRGYNQVMSSFARQRRWSEALGLLRemcaagvSPTVISYNAALSACSKAGRWNEATELLGE 125
                 77888888888899999999988888889999999999999866666666666655588777779999999999999999999999876 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 2.4
                 HHHHHT-SSHHHHHHHHHT CS
    Clathrin  77 aklcekadlyeeavilykk 95 
                 +  + +a+ +eea+  y  
  KOO23499.1 209 ITALADAGRWEEALKTYAS 227
                 3333333344444333333 PP

  == domain 3  score: -2.4 bits;  conditional E-value: 2.9
                 SSHCSCHHHHTTTTTXXSHHHHH CS
    Clathrin 108 klkdfddaieyaakvsnpelwek 130
                 + ++f+ ai++aa +++p+++  
  KOO23499.1 270 RTSSFNMAINTAAGAQQPAAALA 292
                 568999******99999987765 PP

  == domain 4  score: -1.9 bits;  conditional E-value: 2
                 SHSSXSSSSHCSCHHHHTTTTTXXSHHHHHHHHH CS
    Clathrin 101 kaisllkklkdfddaieyaakvsnpelwekllea 134
                  a+s l+  + +++a++ ++ ++  ++++ l+++
  KOO23499.1 311 AALSALEAGGRWQQALRLLRDMRRARVAPSLISY 344
                 3344456666666666666666666666666666 PP

  == domain 5  score: 0.1 bits;  conditional E-value: 0.5
                 THHHHHHHT-SSHHHHHHHHHTT CS
    Clathrin  74 ekvaklcekadlyeeavilykki 96 
                   ++  ce a+ +e+++ l+  +
  KOO23499.1 459 SAAIAACERAGEWERLLALFAGL 481
                 45667788888887777776654 PP

  == domain 6  score: 2.9 bits;  conditional E-value: 0.064
                 HSSXSSSSHCSCHHHHTTTTTXXSHHHHHHHHHH CS
    Clathrin 102 aisllkklkdfddaieyaakvsnpelweklleal 135
                 +++ +++  d+d aie++  +++ +++++++++ 
  KOO23499.1 537 LLKACERAADWDTAIETLSIMKSHKIVPDAISYT 570
                 5556788899999999999999999999999885 PP

  == domain 7  score: -2.8 bits;  conditional E-value: 3.9
                 CCCHHHHHCTT-HHHHCHHHC CS
    Clathrin  11 srvvklfeeaglleelleyLe 31 
                 ++v  ++ +ag  ee++ +Le
  KOO23499.1 712 QAVYSACDQAGAQEEAKALLE 732
                 566677777777777777776 PP

>> Methyltransf_25  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.0   0.0         1   1.4e+03      56      89 ..     615     648 ..     611     650 .. 0.85
   2 ?   11.8   0.1   0.00023      0.31       5      75 ..     647     720 ..     645     736 .. 0.68

  Alignments for each domain:
  == domain 1  score: 0.0 bits;  conditional E-value: 1
                      CGBSSSTTTEEEEEEESTGGGSSHHHHHHHHHHH CS
  Methyltransf_25  56 edlpfedgsfDlvvssgalhhlsdedlekalkei 89 
                       ++p + + fD+v  s   h+++ + +e+al  +
       KOO23499.1 615 AQWPTALAVFDAVANSEDAHVCTTPVYEQALTAC 648
                      678888999******9889999999999999876 PP

  == domain 2  score: 11.8 bits;  conditional E-value: 0.00023
                      T-TTSHHHHHHHCTSTSSEEEEEESSHHHHHHHHHHHHH.TTT..TEEEEESBCCG.BSSSTTTEEEEEEESTGG CS
  Methyltransf_25   5 GcGtGrltlalakrlgkakvtgvDiseemleaareraee.egl..nvefvqgdaed.lpfedgsfDlvvssgalh 75 
                      +c  G   +++a+ +++ k +gvDis+++ ++ ++ +++ +++   + + +g + d l  ++ ++ +v+s+   +
       KOO23499.1 647 ACAVGAQPERAARYIEQMKCVGVDISAACYAQLASAHAAaRDWrgALAVFKGLMADgLRPDAPTYQAVYSACD-Q 720
                      79999999999999989**********9987755444432444446666666665548888889999999644.3 PP

>> MOZART1  Mitotic-spindle organizing gamma-tubulin ring associated
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.1   0.0     0.028        39      21      39 ..      83     101 ..      82     103 .. 0.88
   2 ?   -3.4   0.0       6.2   8.5e+03      22      39 ..     515     532 ..     511     533 .. 0.85
   3 ?    3.9   0.0     0.033        46      21      40 ..     584     603 ..     583     605 .. 0.91
   4 ?   -2.3   0.0         3   4.1e+03      30      47 .]     648     665 ..     648     665 .. 0.86

  Alignments for each domain:
  == domain 1  score: 4.1 bits;  conditional E-value: 0.028
     MOZART1  21 etLsicvkLienGVnPeaL 39 
                 e+L ++ +++ +GV+P+ +
  KOO23499.1  83 EALGLLREMCAAGVSPTVI 101
                 889999**********875 PP

  == domain 2  score: -3.4 bits;  conditional E-value: 6.2
     MOZART1  22 tLsicvkLienGVnPeaL 39 
                 +Ls++ ++ e G  P+ L
  KOO23499.1 515 ALSLLGQMTEEGYAPDLL 532
                 689999999999999887 PP

  == domain 3  score: 3.9 bits;  conditional E-value: 0.033
     MOZART1  21 etLsicvkLienGVnPeaLA 40 
                 ++Ls+ + ++ +G++P++LA
  KOO23499.1 584 KALSLWLTMLTDGISPDTLA 603
                 6899999************9 PP

  == domain 4  score: -2.3 bits;  conditional E-value: 3
     MOZART1  30 ienGVnPeaLAavikelR 47 
                 +  G +Pe  A++i++++
  KOO23499.1 648 CAVGAQPERAARYIEQMK 665
                 56799*********9986 PP

>> TENA_THI-4  TENA/THI-4/PQQC family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.5   0.2    0.0012       1.6      77     186 ..      76     181 ..      51     191 .. 0.77
   2 ?    1.3   0.1      0.18   2.5e+02      48     122 ..     145     222 ..     139     228 .. 0.73
   3 ?   -3.3   0.4       4.9   6.7e+03     107     131 ..     346     370 ..     331     392 .. 0.50
   4 ?   -0.5   0.0      0.66   9.1e+02      92     119 ..     410     437 ..     405     440 .. 0.89
   5 ?   -1.3   0.0       1.1   1.5e+03      93     125 ..     557     589 ..     540     602 .. 0.84

  Alignments for each domain:
  == domain 1  score: 8.5 bits;  conditional E-value: 0.0012
                 HHHHHHHHHTT-HHHHHCTTT--HHHHHHHHHHHHHHCHS-HHHHHHHHHHHHHHHHHHH.HHHCCHHHS-TSCHHHHHHHHHCSHHHHHHHHHHHHHH CS
  TENA_THI-4  77 elhlrlaealGlsreelsktkpspatkayvrylldlarrgslaeavaallpclfvyqeia.erlkeklralegpeyyewvkeyaseefraaveeakrll 174
                 ++ +r  ealGl re   +  +sp++ +y ++l ++++ g + ea     ++l++  e+  ++ ++ + a++   y++ ++ +++++ +   ++a ++l
  KOO23499.1  76 ARQRRWSEALGLLREM-CAAGVSPTVISYNAALSACSKAGRWNEA-----TELLGEMEAGsSKGGGSVPAPDVISYSTVISACQKASTGTMGASASAAL 168
                 5557888999999987.899999*******************997.....6777777776567777777888888888888888888888888888888 PP

                 HHHHHTSHHHH.H CS
  TENA_THI-4 175 erllakvsdeq.l 186
                 e++l+ ++ ++  
  KOO23499.1 169 ETALELLERMRrS 181
                 8888888877744 PP

  == domain 2  score: 1.3 bits;  conditional E-value: 0.18
                 HHHHHHC-SSHHHHHHHHHHHHHHHHCHHHHHHHHHHHTT-HHHHHC....TTT--HHHHHHHHHHHHHHCHS-HHHHH CS
  TENA_THI-4  48 laiilskssdlevrrelesrivdhdgeeielhlrlaealGlsreels....ktkpspatkayvrylldlarrgslaeav 122
                 ++++ s ++ +++   + + + + +++ +el++r+ ++  ++++       kt p   +  y++++ +la  g + ea+
  KOO23499.1 145 YSTVISACQKASTG-TMGASASAALETALELLERMRRSSKVQEPTEGaevpKTAPVANVFTYTSAITALADAGRWEEAL 222
                 56667777777777.8888889999999999999999999988765400114455555667889999999999998875 PP

  == domain 3  score: -3.3 bits;  conditional E-value: 4.9
                 HHHHHHHCHS-HHHHHHHHHHHHHH CS
  TENA_THI-4 107 rylldlarrgslaeavaallpclfv 131
                  +l ++a+ ++++ a +++     +
  KOO23499.1 346 LALGACAKAAKVSSATVSSAKVSSA 370
                 5555555555555444444433333 PP

  == domain 4  score: -0.5 bits;  conditional E-value: 0.66
                 HHCTTT--HHHHHHHHHHHHHHCHS-HH CS
  TENA_THI-4  92 elsktkpspatkayvrylldlarrgsla 119
                 el++ k +p++++y+ ++ +l+  g++ 
  KOO23499.1 410 ELQQLKLQPDVTSYSLAIAALSDAGQWE 437
                 5788999****************99996 PP

  == domain 5  score: -1.3 bits;  conditional E-value: 1.1
                 HCTTT--HHHHHHHHHHHHHHCHS-HHHHHHHH CS
  TENA_THI-4  93 lsktkpspatkayvrylldlarrgslaeavaal 125
                 ++++k  p++ +y+++  +l+r  ++ +a+   
  KOO23499.1 557 MKSHKIVPDAISYTSAVGALGRAREWEKALSLW 589
                 466788999*****************9987655 PP

>> TPR_2  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.0       1.6   2.2e+03      12      26 ..      76      90 ..      74      93 .. 0.83
   2 ?   -0.5   0.0       1.3   1.8e+03      10      24 ..     109     123 ..     108     125 .. 0.82
   3 ?   -2.2   0.3       4.5   6.1e+03      20      30 ..     164     174 ..     162     177 .. 0.79
   4 ?    3.7   0.1     0.057        79      10      24 ..     211     225 ..     210     226 .. 0.88
   5 ?   -2.5   0.0       5.6   7.8e+03      15      28 ..     250     263 ..     249     264 .. 0.88
   6 ?   -0.3   0.0       1.1   1.5e+03      11      25 ..     316     330 ..     314     331 .. 0.78
   7 ?   -2.6   0.0       6.2   8.6e+03      15      23 ..     580     588 ..     576     592 .. 0.65
   8 ?    2.9   1.2      0.11   1.5e+02       1      25 [.     673     697 ..     673     698 .. 0.91

  Alignments for each domain:
  == domain 1  score: -0.8 bits;  conditional E-value: 1.6
       TPR_2 12 yklgdyeeAleafek 26
                +++ ++ eAl ++++
  KOO23499.1 76 ARQRRWSEALGLLRE 90
                789******998887 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 1.3
       TPR_2  10 ayyklgdyeeAleaf 24 
                 a+ k+g+++eA e++
  KOO23499.1 109 ACSKAGRWNEATELL 123
                 56799******8876 PP

  == domain 3  score: -2.2 bits;  conditional E-value: 4.5
       TPR_2  20 AleafekAlel 30 
                 A +a+e Alel
  KOO23499.1 164 ASAALETALEL 174
                 77899999998 PP

  == domain 4  score: 3.7 bits;  conditional E-value: 0.057
       TPR_2  10 ayyklgdyeeAleaf 24 
                 a++ +g++eeAl+ +
  KOO23499.1 211 ALADAGRWEEALKTY 225
                 68899*******987 PP

  == domain 5  score: -2.5 bits;  conditional E-value: 5.6
       TPR_2  15 gdyeeAleafekAl 28 
                 gd+  A+  +e+Al
  KOO23499.1 250 GDWVTARSVLEEAL 263
                 78889999****98 PP

  == domain 6  score: -0.3 bits;  conditional E-value: 1.1
       TPR_2  11 yyklgdyeeAleafe 25 
                 +++ g++++Al++++
  KOO23499.1 316 LEAGGRWQQALRLLR 330
                 677799999998875 PP

  == domain 7  score: -2.6 bits;  conditional E-value: 6.2
       TPR_2  15 gdyeeAlea 23 
                  ++e+Al +
  KOO23499.1 580 REWEKALSL 588
                 456666654 PP

  == domain 8  score: 2.9 bits;  conditional E-value: 0.11
       TPR_2   1 aealynlGlayyklgdyeeAleafe 25 
                 a ++ +l+ a++++ d+  Al+ f+
  KOO23499.1 673 AACYAQLASAHAAARDWRGALAVFK 697
                 578999***************9985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (758 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       822  (0.0458475); expected 358.6 (0.02)
Passed bias filter:                      454  (0.0253221); expected 358.6 (0.02)
Passed Vit filter:                        52  (0.00290033); expected 17.9 (0.001)
Passed Fwd filter:                        18  (0.00100396); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 0.75u 0.26s 00:00:01.01 Elapsed: 00:00:00.43
# Mc/sec: 5318.39
//
Query:       KOO23500.1  [L=328]
Description: set and mynd domain [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      9e-07   29.4   0.0    1.4e-06   28.8   0.0    1.3  1  SET       SET domain


Domain annotation for each model (and alignments):
>> SET  SET domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.8   0.0   7.6e-11   1.4e-06     118     168 ..      68     116 ..       5     117 .. 0.69

  Alignments for each domain:
  == domain 1  score: 28.8 bits;  conditional E-value: 7.6e-11
                 EECCC.GTTGGGCEEXSSSSEEEEEEEETTSSEEEEEESSXBXTTEEEEEXT CS
                 xxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
         SET 118 sgnga.gplarflNHsCdpNcnltvqnvlrgprvavfAtrdIkkGeEltidY 168
                  g++    ++  +NHs +pN++l +++   +  + v+++ ++++GeEl+++Y
  KOO23500.1  68 LGSALyPQFGAVMNHSNNPNVYLIFDD---DWLLRVRTIAPVAAGEELCFSY 116
                 22222446888**********777777...999******************* PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (328 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       383  (0.021362); expected 358.6 (0.02)
Passed bias filter:                      346  (0.0192983); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.24s 00:00:00.69 Elapsed: 00:00:00.40
# Mc/sec: 2472.57
//
Query:       KOO23501.1  [L=96]
Description: hypothetical protein Ctob_004928 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (96 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       703  (0.0392102); expected 358.6 (0.02)
Passed bias filter:                      546  (0.0304535); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.22s 00:00:00.60 Elapsed: 00:00:00.38
# Mc/sec: 761.90
//
Query:       KOO23502.1  [L=338]
Description: DNA repair protein rad51-like 1 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
   3.4e-120  400.0   0.1   4.3e-120  399.7   0.1    1.1  1  Rad51          Rad51
    5.8e-11   42.4   0.1    8.1e-11   41.9   0.1    1.1  1  RecA           recA bacterial DNA recombination protein
    2.3e-07   30.4   0.1    5.6e-07   29.1   0.1    1.6  1  ATPase         KaiC
    4.5e-07   29.7   0.0    6.6e-07   29.1   0.0    1.2  1  AAA_25         AAA domain
    4.3e-05   24.0   1.4    7.2e-05   23.3   0.4    1.9  2  HHH_5          Helix-hairpin-helix domain
  ------ inclusion threshold ------
      0.017   14.9   0.5      0.035   13.9   0.1    1.6  2  RNA_pol_A_CTD  Bacterial RNA polymerase, alpha chain C termin
       0.04   13.6   0.0       0.07   12.8   0.0    1.4  1  AAA_24         AAA domain


Domain annotation for each model (and alignments):
>> Rad51  Rad51
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  399.7   0.1  1.7e-123  4.3e-120       2     254 ..      84     335 ..      83     336 .. 0.98

  Alignments for each domain:
  == domain 1  score: 399.7 bits;  conditional E-value: 1.7e-123
                 S-EBHHHHHHHHHSS-EE--S-HHHHHHHTSSEESSSEEEEEESTTSSHHHHHHHHHHHTTS-TTTS--SSEEEEEESSS---GGGGHHHHHHTT--HH CS
       Rad51   2 gfvsavellekrsellqlttGskklDelLgGGietgsiteifGefrsGktqlchtlcvtvqlplelgGgegkavyidtegtfrperlveiaerykldke 100
                 gf++a+e++++r++l +lttGs++lD+lL+GGietgsiteifGefr+Gktqlchtlcvt qlple+gG+egka+yidtegtfrperlveiaery+ld++
  KOO23502.1  84 GFMAATEVHHQRQDLCMLTTGSRELDALLKGGIETGSITEIFGEFRTGKTQLCHTLCVTSQLPLEQGGAEGKAMYIDTEGTFRPERLVEIAERYGLDGQ 182
                 9************************************************************************************************** PP

                 HHGGGEEEEE--STTHHHHHHHHTHHHHHHS-EEEEEEETTTGGGCH-------THHHHHHHHHHHHHHHHHHHHH--EEEEEEE-------.------ CS
       Rad51 101 evlenvayaRaytiehqeellqqaaallaedkfallivDsvtalyRtdfsgrgelakRqqklgkllrtLrkladefevavvitnqvvaqvdgqaalfsa 199
                 +vl+nv+yaRay+++hq +ll +aa ++ae++f+l+ivDs+t lyRtd+sgrgela+Rq++++k++r+L kl   ++va vitnqvv+++++ a++f +
  KOO23502.1 183 DVLDNVSYARAYNSDHQLQLLVEAACMMAEQRFGLIIVDSATGLYRTDYSGRGELAARQMHMAKFMRALGKLGATYGVACVITNQVVSKPEAGASMF-G 280
                 ********************************************************************************************77777.7 PP

                 ------HHHHHHHH-SEEEEEEE-STTEEEEEEES-SSS-S-EEEEEEETTEEE- CS
       Rad51 200 dpkkPigGlvlahasttRlalrkgkgeeRivkvvdsPnlpeleavfaigeeGied 254
                 + k+PigG+++ah+sttRl+lrkg+ge+Ri+kv+dsP+l+e ea+f+i+ +Gi d
  KOO23502.1 281 NDKQPIGGNIIAHMSTTRLMLRKGRGENRICKVYDSPCLAEGEATFSIQGSGIGD 335
                 889**************************************************98 PP

>> RecA  recA bacterial DNA recombination protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.9   0.1   3.2e-14   8.1e-11      25     222 ..      92     304 ..      68     313 .. 0.71

  Alignments for each domain:
  == domain 1  score: 41.9 bits;  conditional E-value: 3.2e-14
                 --.-----EE--S-HHHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHH......HTT--EEEEESS----HH....HHHHTT--GGG-E.... CS
        RecA  25 ekeklkvetissGslaldialGiGGlpkGriieiyGpessGkttlalhaiaeaq......kkggvaafidaehaldpk....yakklGvdidell.... 109
                 +++++++ ++++Gs  ld  l  GG+  G i+ei+G   +Gkt l+  + + +q       + g a +id+e ++ p+     a++ G+d +++l    
  KOO23502.1  92 HHQRQDLCMLTTGSRELDALLK-GGIETGSITEIFGEFRTGKTQLCHTLCVTSQlpleqgGAEGKAMYIDTEGTFRPErlveIAERYGLDGQDVLdnvs 189
                 456789999*********7665.********************99766555555333111345789*********99633337999***9776654411 PP

                 EE--SSHHHHHHH...HHHHHTTT--SEEEEE-TTT---ST.T-----------HHHHHHHHHHHHHHHHHTTT--EEEEEEE----..--.------- CS
        RecA 110 vsqpdtGeqalei...adalvrsgaidlivvdsvaalvpka.eieGemgdskvglqarlmsqalrkltgaisksntvvifinqirek..iG.vmfgnpe 201
                  ++  + ++ l++   a  ++      li+vds + l   +    Ge++  ++ + a++m +al kl +      ++ +  nq+  k   G  mfgn +
  KOO23502.1 190 YARAYNSDHQLQLlveAACMMAEQRFGLIIVDSATGLYRTDySGRGELAARQMHM-AKFM-RALGKLGA---TYGVACVITNQVVSKpeAGaSMFGNDK 283
                 44444555555442115678888999*******9999754413456777666643.5555.56666665...567888999**99884444269***** PP

                 ----HHHHHHH-SEEEEEEEE CS
        RecA 202 tttGGralkfyasvrldvrri 222
                    GG+ +   ++ rl +r+ 
  KOO23502.1 284 QPIGGNIIAHMSTTRLMLRKG 304
                 ****************99985 PP

>> ATPase  KaiC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.1   0.1   2.2e-10   5.6e-07       2     178 ..     102     293 ..     101     314 .. 0.67

  Alignments for each domain:
  == domain 1  score: 29.1 bits;  conditional E-value: 2.2e-10
      ATPase   2 ktgIeglDeilkgGipegrvvlitGepGtGKtifalqFlikgae...kyge..pgvfvtveepa..edlrenakslGwdlekleeegklaiidasesae 93 
                  tg  +lD +lkgGi  g+++ i Ge  tGKt ++ +  +++     + g   + +++ +e +   e l e a++ G d +++ ++  + +  a++s++
  KOO23502.1 102 TTGSRELDALLKGGIETGSITEIFGEFRTGKTQLCHTLCVTSQLpleQGGAegKAMYIDTEGTFrpERLVEIAERYGLDGQDVLDN--VSYARAYNSDH 198
                 69999********************************9999854111333322679*****97555*******************9..66666665544 PP

      ATPase  94 esaeekdkedleelieelaeaikeikakrvviDsitgl...ayeekeav.aRei.lrqlvrvl....kklgvTailvsekss...........seeaag 172
                 +           +l+ e a +++e +   +++Ds tgl   +y+ + ++ aR+  + +++r l    + +gv  ++++++ s           +++ +g
  KOO23502.1 199 Q----------LQLLVEAACMMAEQRFGLIIVDSATGLyrtDYSGRGELaARQMhMAKFMRALgklgATYGVACVITNQVVSkpeagasmfgnDKQPIG 287
                 3..........4677777888888889999999999994311222222224442233444444100355666678888887766555555555455555 PP

      ATPase 173 gygvee 178
                 g+ +++
  KOO23502.1 288 GNIIAH 293
                 555555 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.1   0.0   2.6e-10   6.6e-07      19     188 ..     105     267 ..      88     272 .. 0.74

  Alignments for each domain:
  == domain 1  score: 29.1 bits;  conditional E-value: 2.6e-10
      AAA_25  19 ppprrwlvkgllpagelallaGapgtGKttlaldlalavatGkpwlgpvapeqgkVlyvsaEdsedelrrRlravgealrddarllvldlagveslpLf 117
                  ++++ l+kg +  g+++ ++G   tGKt l+  l+  v++  p+        gk +y+++E++    ++Rl ++ e + +d++  + ++      + +
  KOO23502.1 105 SRELDALLKGGIETGSITEIFGEFRTGKTQLCHTLC--VTSQLPLEQ--GGAEGKAMYIDTEGTF--RPERLVEIAERYGLDGQDVLDNVSY---ARAY 194
                 578899***********************9987765..566667644..3489***********8..799***9**9996544444443322...2333 PP

      AAA_25 118 akdrggtlltadvdaleaaieevegvrlvviDplsralgg.....densnsdv..galvealeriarrtgaavllvhH 188
                      +++l+  v+a    +e+  + +l+++D+ + +++      +e +++++  ++++ al ++ + +g+a++++ +
  KOO23502.1 195 N---SDHQLQLLVEAACMMAEQ--RFGLIIVDSATGLYRTdysgrGELAARQMhmAKFMRALGKLGATYGVACVITNQ 267
                 3...333344444343433444..49********9999984433455555555559**************99998765 PP

>> HHH_5  Helix-hairpin-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.3   0.4   2.8e-08   7.2e-05       8      53 ..      29      74 ..      24      76 .. 0.93
   2 ?   -3.2   0.0       5.4   1.4e+04      17      25 ..     110     118 ..     104     124 .. 0.77

  Alignments for each domain:
  == domain 1  score: 23.3 bits;  conditional E-value: 2.8e-08
                TT--HHHHHHHHTTT--SHHHHHHS-HHHHHTSTTS-HHHHHHHHH CS
       HHH_5  8 sGiGpktAlallsaGiesvedlaaadveeLakipGiGkktAeriil 53
                +Gi ++++++l +aG+ ++e+++ a+++eL+ i+G++  ++++i++
  KOO23502.1 29 PGIVAADIKKLKEAGYHTIEAVLYATKKELSGIKGLSDNKVDKILE 74
                57778899************************************98 PP

  == domain 2  score: -3.2 bits;  conditional E-value: 5.4
                 HHHTTT--S CS
       HHH_5  17 allsaGies 25 
                 all++Gie+
  KOO23502.1 110 ALLKGGIET 118
                 788999886 PP

>> RNA_pol_A_CTD  Bacterial RNA polymerase, alpha chain C terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.8   0.0       4.5   1.2e+04       5      19 ..      13      27 ..      10      28 .. 0.73
   2 ?   13.9   0.1   1.4e-05     0.035      28      63 ..      39      74 ..      33      76 .. 0.94

  Alignments for each domain:
  == domain 1  score: -3.8 bits;  conditional E-value: 4.5
                   XXXXXXX--BHHHHT CS
  RNA_pol_A_CTD  5 eeelkklsisIeeLe 19
                    ee ++ + +Ie+Le
     KOO23502.1 13 MEEAQTSYSHIEKLE 27
                   566777888999886 PP

  == domain 2  score: 13.9 bits;  conditional E-value: 1.4e-05
                   HHHTT--BHHHHHHS-HHHHTTSSS-SSHHHHHHHH CS
  RNA_pol_A_CTD 28 LkragiktvgeLvklseeeLlkikNlGkKSleEIke 63
                   Lk+ag++t++ ++  +++eL+ ik l    ++ I e
     KOO23502.1 39 LKEAGYHTIEAVLYATKKELSGIKGLSDNKVDKILE 74
                   9***************************99999987 PP

>> AAA_24  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0   2.7e-05      0.07       7      79 ..     124     228 ..     121     257 .. 0.89

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 2.7e-05
      AAA_24   7 iyGpsgiGKTtlakel.............gpkplfidtekGlksldadkfpdie.....swedfldevvel.................aaeladyktlv 70 
                 i+G+  +GKT l+ +l             + k+ +idte+      + ++++i        +d+ld v +                    +++++  ++
  KOO23502.1 124 IFGEFRTGKTQLCHTLcvtsqlpleqggaEGKAMYIDTEG---TFRPERLVEIAeryglDGQDVLDNVSYAraynsdhqlqllveaacMMAEQRFGLII 219
                 89**************************************...569999999999999999999999999999999999999999999788888***** PP

      AAA_24  71 iDtidelee 79 
                 +D+++ l++
  KOO23502.1 220 VDSATGLYR 228
                 *****9987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (338 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       554  (0.0308997); expected 358.6 (0.02)
Passed bias filter:                      515  (0.0287244); expected 358.6 (0.02)
Passed Vit filter:                        52  (0.00290033); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.48u 0.27s 00:00:00.75 Elapsed: 00:00:00.42
# Mc/sec: 2399.13
//
Query:       KOO23503.1  [L=1585]
Description: multidrug resistance-associated protein 3, partial [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    4.2e-60  203.7  19.8    1.1e-35  123.7   4.1    2.8  2  ABC_membrane   ABC transporter transmembrane region
    3.5e-46  157.1   0.0    3.4e-26   92.4   0.0    2.6  2  ABC_tran       ABC transporter
    1.1e-09   38.0   0.2      0.069   12.6   0.0    4.1  4  SMC_N          RecF/RecN/SMC N terminal domain
    1.3e-07   31.7   0.8       0.67    9.7   0.0    4.3  4  AAA_21         AAA domain, putative AbiEii toxin, Type IV TA 
    1.5e-06   28.7   1.5       0.01   16.2   0.1    2.9  2  AAA_16         AAA ATPase domain
    2.9e-06   28.0   0.2      0.066   13.7   0.0    2.4  2  AAA_23         AAA domain
    0.00014   21.9   0.2        0.6   10.2   0.0    2.5  2  MMR_HSR1       50S ribosome-binding GTPase
    0.00027   20.6   1.5        0.2   11.4   0.5    2.6  2  AAA_29         P-loop containing region of AAA domain
    0.00059   20.1   0.9       0.85    9.9   0.0    3.5  2  AAA_22         AAA domain
     0.0029   17.5   0.2       0.85    9.5   0.0    2.3  2  RsgA_GTPase    RsgA GTPase
     0.0054   15.9   1.1        3.9    6.6   0.1    3.5  3  NB-ARC         NB-ARC domain
     0.0084   15.7   1.3       0.31   10.6   0.1    2.3  2  cobW           CobW/HypB/UreG, nucleotide-binding domain
  ------ inclusion threshold ------
       0.02   14.6   1.7         12    5.6   0.0    3.6  4  AAA_30         AAA domain
      0.041   12.8   0.4        2.9    6.7   0.1    2.2  2  TrwB_AAD_bind  Type IV secretion-system coupling protein DNA-
       0.07   12.2   0.5          1    8.4   0.1    2.2  2  T2SSE          Type II/IV secretion system protein
      0.081   13.0   0.3        7.2    6.6   0.0    2.4  2  Dynamin_N      Dynamin family
      0.082   13.4   0.3        3.4    8.2   0.1    2.5  2  AAA_18         AAA domain
       0.12   11.7   0.2         12    5.1   0.1    2.3  2  Zeta_toxin     Zeta toxin
       0.17   11.6   0.0        8.3    6.0   0.0    2.2  2  ATP-synt_ab    ATP synthase alpha/beta family, nucleotide-bin
       0.35   10.4   3.9        1.4    8.5   0.1    3.1  3  AAA_25         AAA domain
       0.62   10.1   1.7        1.6    8.8   0.2    2.1  2  DUF87          Helicase HerA, central domain
       0.93    9.8   8.2         17    5.7   0.1    4.8  3  SbcCD_C        Putative exonuclease SbcCD, C subunit


Domain annotation for each model (and alignments):
>> ABC_membrane  ABC transporter transmembrane region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   91.5   1.2   8.2e-29   6.7e-26       5     258 ..     352     605 ..     348     630 .. 0.91
   2 !  123.7   4.1   1.3e-38   1.1e-35       6     248 ..    1060    1323 ..    1056    1333 .. 0.94

  Alignments for each domain:
  == domain 1  score: 91.5 bits;  conditional E-value: 8.2e-29
                   HHHHHHHHHHHHHHHHHHHHHHHHHHSSTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH..HHHHHHHHHHHHHHHHHHHHCSTHHHHHHSCHHH CS
  ABC_membrane   5 illailagvlsplfplvlgrildtlldkgdpetealnvysllllllglaqfilallqsyll..nvtgerlskrlrrklfkkilrqpmsffdtnsvGe 99 
                     l++l++++ +++pl+l  i+  +++   + +++++ ++l++ ++++  f + +l +y++    +g r++ ++ + +++k l +  +  ++  +G 
    KOO23503.1 352 GALQLLNTACTFANPLFLHAIVTYINKPDASGYTNSTAILLAVGIFAANCFKSIVLGQYFWrgFRLGLRTRAAVGQVVYRKALALAHEQRQEFGTGA 448
                   67899********************998777779****************************999******************************** PP

                   HHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHT CS
  ABC_membrane 100 llsrltndvsklrdglgeklglffqslltfvgglivmfylgwkltlvllailpliilvsaviakilkklkkkeqkavakassvaeEslsgirtVkaf 196
                   ++s +  d++kl d+l++ ++l+  +l++ v+++ ++ ++g +  l+ l++l++ ++++ +i+ + + ++k  +++++k+ ++a+E l+g++ +k+f
    KOO23503.1 449 IVSYMQIDAQKLADALPYLHLLWQGPLQLAVATYMLYDFMGYS-GLAALGVLIISMPLNTWISNKARVYTKLTMEKRDKRVKYANELLQGVKILKLF 544
                   *****************************************98.8**************************************************** PP

                   TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT.TSSTHH CS
  ABC_membrane 197 greeyflekfekaleeakkagikkaianglligitqllgllsyalalwfGttlvis.gelsvg 258
                   ++e+++l + e++++ ++ka +   ++ g+++ i+++l+l+++a+   fG + v+  g+++++
    KOO23503.1 545 AWEPAMLGQLEEKRRHELKAVRLNMLIGGVMGFIFTALPLVVTAAS--FGLFPVHGmGKITPE 605
                   ************9999999999999999999888888888888888..788888776766654 PP

  == domain 2  score: 123.7 bits;  conditional E-value: 1.3e-38
                    HHHHHHHHHHHHHHHHHHHHHHHHHSSTCCHH......................HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
  ABC_membrane    6 llailagvlsplfplvlgrildtlldkgdpet......................ealnvysllllllglaqfilallqsyllnvtgerlskrlrr 78  
                     +a+++++l +  +++lg +  +l ++ ++                         +  +y+ ++++++l+++++ ll+s ll +++  + +r++ 
    KOO23503.1 1060 GAAVVSQALVFGSSFWLGVWAGDLAPN-TTTViingtkhvetiskgspfheisgGQPWFYLAVYVAAALVSALCILLRSVLLAYASVSAGRRIHD 1153
                    578999999999999999999999995.3333466667788999999999988888889999********************************* PP

                    HHHHHHHCSTHHHHHHSCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
  ABC_membrane   79 klfkkilrqpmsffdtnsvGellsrltndvsklrdglgeklglffqslltfvgglivmfylgwkltlvllailpliilvsaviakilkklkkkeq 173 
                    +++++++  p sffd ++ G++++r++ dv+k++++l+++l++f+ + +++v++l+++++ +  + l l ++ + +++ s ++    +++++ e+
    KOO23503.1 1154 DAVRAVFASPASFFDVTPLGRIINRFSGDVQKVDTALASSLSQFVSYSVSLVCTLAIIVVNSLFILLSLPPLGIAYLYTSSYYRNSAREVQRLES 1248
                    *********************************************************************************************** PP

                    HHHHHHHHHHHHHHHTHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
  ABC_membrane  174 kavakassvaeEslsgirtVkafgreeyflekfekaleeakkagikkaianglligitqllgllsyalalwfGtt 248 
                     + +++++ ++E+l+g   ++a+++ ++f+e   k+++++++a++ ++ an++l ++++l ++++ +l++++++ 
    KOO23503.1 1249 ISKSPIYASFQEALNGASSIHAYAANSRFEESNRKNNDYNLRANYISLAANRWLTVRLELYSNILLFLTALLAVL 1323
                    *******************************************************************99988775 PP

>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.1   0.0   9.6e-20   7.8e-17       3     134 ..     766     896 ..     764     899 .. 0.84
   2 !   92.4   0.0   4.2e-29   3.4e-26       6     137 .]    1370    1513 ..    1368    1513 .. 0.92

  Alignments for each domain:
  == domain 1  score: 62.1 bits;  conditional E-value: 9.6e-20
                 EEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGGB-HHHCCHCEEEE-SS--S-TTSBHHHH...............HHHTCHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...............xxxxxxx RF
    ABC_tran   3 nvslklkegekvaivGenGaGKStLlkllagllkpteGeilldgkdlkeqeleslrkeigvlpqepqlfpeltvren...............esdeeie 86 
                 ++s++l +g +v+i G+ G+GKStLl++l g +   +G+              ++r +i+ ++qep +++++ +r+n                s   + 
  KOO23503.1 766 DLSFTLPQGGLVGIGGPVGSGKSTLLSALVGDVPRLQGRC-------------VVRGSIALCTQEPWIQNKT-LRDNilfglpyddtfynqvLSACALR 850
                 89********************************999998.............99************99999.*********95554433322222244 PP

                 HHHHHSTTGGTTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEES CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  87 kalsklglkelkdtvvksspssLSgGqkqrvalarallkkpkllllDE 134
                 + l++l   +  +t +++++ +LSgGqk rvalara   +++++llD+
  KOO23503.1 851 ADLEQLAAGD--ATEIGERGVNLSGGQKARVALARACYARASVVLLDD 896
                 4444444444..88889999***************************8 PP

  == domain 2  score: 92.4 bits;  conditional E-value: 4.2e-29
                  EEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGGB-HHHCCHCEEEE-SS--S-TTSBHHHH......HHHTCHHHHHHHSTTGG CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx......xxxxxxxxxxxxxxxxx RF
    ABC_tran    6 lklkegekvaivGenGaGKStLlkllagllkpteGeilldgkdlkeqeleslrkeigvlpqepqlfpeltvren......esdeeiekalsklglke 96  
                  l+l e ++++ivG++GaGKS++l +l++l +  +G i +dg dl + +l+ lr++++++pq+p lf ++ +r+n        dee+ +a+++ g++ 
  KOO23503.1 1370 LTLLETQMIGIVGRTGAGKSSILVCLYRLAELRSGAIIIDGLDLARVPLPTLRARLAIIPQDPVLFTGT-LRSNldptdlCTDEELWAAMRQAGMEA 1465
                  6788999**************************************************************.9********977777777777777777 PP

                  .......TTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTTT CS
                  .......xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran   97 .......lkdtvvksspssLSgGqkqrvalarallkkpkllllDEpta 137 
                           ++++++++ +LS Gq+q ++l+rall+k+++l+lDE+ta
  KOO23503.1 1466 pmkqhpdGLKRPIEERGGNLSMGQRQLLCLCRALLRKARVLVLDEATA 1513
                  77777778899999999*****************************96 PP

>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.3   0.2     0.059        48      26      44 ..     776     794 ..     766     798 .. 0.87
   2 !   10.4   0.0   0.00039      0.32     136     208 ..     870     941 ..     800     951 .. 0.78
   3 !    6.0   0.0    0.0085       6.9      22      49 ..    1373    1399 ..    1364    1407 .. 0.81
   4 !   12.6   0.0   8.4e-05     0.069     136     212 ..    1484    1556 ..    1433    1562 .. 0.83

  Alignments for each domain:
  == domain 1  score: 3.3 bits;  conditional E-value: 0.059
                 EEEEEESTTSSHHHHHHHH CS
                 xxxxxxxxxxxxxxxxxxx RF
       SMC_N  26 ftaivGpNGSGKsnlldAi 44 
                 +  i Gp GSGKs ll A+
  KOO23503.1 776 LVGIGGPVGSGKSTLLSAL 794
                 56789***********998 PP

  == domain 2  score: 10.4 bits;  conditional E-value: 0.00039
                 CS-HHHHHHHHHHHHHHHHCCS--SEEEECTTTTTS-HHH.HHHHHHHHHHHCTT..SEEEEE-SSHHHCCC-SCE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxx RF
       SMC_N 136 lLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDekn.vkkvaellkekskn..aQfivislreemlekadkl 208
                 +LSgG+k+ vala       + +a+++llD++ +a D++   + va+ +     +  a ++ ++++ + l+++d++
  KOO23503.1 870 NLSGGQKARVALA----RACYARASVVLLDDVLSAVDAEVgAHLVAQCITGLLRQrgALVVFVTHHLHWLHECDHV 941
                 8******988875....56899***************875267889999855444125555567766677777665 PP

  == domain 3  score: 6.0 bits;  conditional E-value: 0.0085
                  TTSSEEEEEESTTSSHHHHHHHHHHHCT CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N   22 fsksftaivGpNGSGKsnlldAilFvLG 49  
                  +++++  ivG+ G+GKs++l  + + L 
  KOO23503.1 1373 LETQMIGIVGRTGAGKSSILVCL-YRLA 1399
                  6788999************9877.6665 PP

  == domain 4  score: 12.6 bits;  conditional E-value: 8.4e-05
                  CS-HHHHHHHHHHHHHHHHCCS--SEEEECTTTTTS-HHHHHHHHHHHHHHCTTSEEEEE-SSHHHCCC-SCEEEEE CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N  136 lLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvkkvaellkeksknaQfivislreemlekadklvgvt 212 
                  +LS G+++L+ l    A    ++a + +lDe  a  D +  + + + l+++ + + ++ i++r e++ ++d++v + 
  KOO23503.1 1484 NLSMGQRQLLCLC--RA--LLRKARVLVLDEATASVDMESDALIQQTLQHNMSGTTVLTIAHRLETIMHCDRVVVMH 1556
                  7999999996653..33..45778899********************************************998665 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.5   0.5    0.0019       1.5       3      19 ..     778     794 ..     776     803 .. 0.88
   2 ?    1.9   0.0       0.2   1.6e+02     237     298 ..     871     931 ..     814     935 .. 0.82
   3 !    9.7   0.0   0.00083      0.67       2      26 ..    1378    1404 ..    1377    1444 .. 0.78
   4 ?    5.9   0.0     0.012       9.7     236     265 ..    1484    1510 ..    1459    1516 .. 0.88

  Alignments for each domain:
  == domain 1  score: 8.5 bits;  conditional E-value: 0.0019
      AAA_21   3 vliGpNgsGKSnLLdal 19 
                 ++ Gp gsGKS+LL al
  KOO23503.1 778 GIGGPVGSGKSTLLSAL 794
                 688*************9 PP

  == domain 2  score: 1.9 bits;  conditional E-value: 0.2
      AAA_21 237 lSdGtkrllalltallralkkgsllliDEpEngLHPkllrrll.ell.kelsrngaQviltTHS 298
                 lS G+k   al+ a+++++   s++l+D++ +  + ++ ++l+ + +  +l+++ga v+++TH 
  KOO23503.1 871 LSGGQKARVALARACYARA---SVVLLDDVLSAVDAEVGAHLVaQCItGLLRQRGALVVFVTHH 931
                 4999998889999999999...****************99999999988888899999*****7 PP

  == domain 3  score: 9.7 bits;  conditional E-value: 0.00083
      AAA_21    2 nvliGpNgsGKSnLLdaldllarl..d 26  
                   +++G+ g+GKS++L +l+ la l   
  KOO23503.1 1378 IGIVGRTGAGKSSILVCLYRLAELrsG 1404
                  589******************976442 PP

  == domain 4  score: 5.9 bits;  conditional E-value: 0.012
      AAA_21  236 elSdGtkrllalltallralkkgsllliDE 265 
                  +lS+G+++ll+l  allr +   ++l++DE
  KOO23503.1 1484 NLSMGQRQLLCLCRALLRKA---RVLVLDE 1510
                  57****************99...******9 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.1   1.3e-05      0.01      23     149 ..     773     937 ..     765     956 .. 0.67
   2 !   10.4   0.2   0.00075      0.61      10     160 ..    1361    1528 ..    1358    1539 .. 0.52

  Alignments for each domain:
  == domain 1  score: 16.2 bits;  conditional E-value: 1.3e-05
      AAA_16  23 rpelvllsGesGvGKsslvrellralekdggif.lrgkcdqlesa...............ipy.....salaqalareellrqlldeaesaeleawrek 100
                 +++lv + G+ G+GKs+l+ +l   + +  g + +rg    ++++               +py      ++++a+a +  l+ql++ +++ e ++    
  KOO23503.1 773 QGGLVGIGGPVGSGKSTLLSALVGDVPRLQGRCvVRGSIALCTQEpwiqnktlrdnilfgLPYddtfyNQVLSACALRADLEQLAAGDAT-EIGERGVN 870
                 45788999***********99998777664334366666666555777888888899999888655543444444344666666666222.33333333 PP

      AAA_16 101 leeala....................avpelagaeasrllellkrll.allsrderplvlvlDdlqwade 149
                 l    +                      + l++ +a+  ++l+++++  ll++++  +v+v  +l+w+ e
  KOO23503.1 871 LS---GgqkarvalaracyarasvvlLDDVLSAVDAEVGAHLVAQCItGLLRQRGALVVFVTHHLHWLHE 937
                 33...2444666666777777755554445555555999999999**99999977768888899999977 PP

  == domain 2  score: 10.4 bits;  conditional E-value: 0.00075
      AAA_16   10 eqLlsalervrsgrpelvllsGesGvGKsslvrellralekdggiflrgkcdqlesaipysalaqalareellrqllde...............aes 91  
                  ++L+ +++++   +++++ ++G  G GKss++ +l+r +e + g  +    d     +p+     +l r   l+ + ++               +  
  KOO23503.1 1361 DTLNFLIRQLTLLETQMIGIVGRTGAGKSSILVCLYRLAELRSGAIIIDGLDLA--RVPL----PTL-R-ARLAIIPQDpvlftgtlrsnldptD-- 1447
                  5677777777777889999*****************977777444444444444..1222....122.1.3333333333333222112222221.. PP

      AAA_16   92 aeleawrekleeala.......................avpelagaeasrllellkrllallsrderplvlvlDdlq.wadeaslqllaaLlr 160 
                           l++  +                       ++ e  g ++   ++ll  + all++ +   vlvlD++   +d +s +l++++l+
  KOO23503.1 1448 ---------LCTDEElwaamrqagmeapmkqhpdglkrPIEERGGNLSMGQRQLLCLCRALLRK-A--RVLVLDEATaSVDMESDALIQQTLQ 1528
                  .........2222222222223223343455555555555555555554444444444444555.4..5999998884445555555666665 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.7   0.0   8.1e-05     0.066      17      39 ..     769     794 ..     760     804 .. 0.86
   2 !   11.6   0.1   0.00035      0.29      18      39 ..    1374    1395 ..    1360    1396 .. 0.80

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 8.1e-05
      AAA_23  17 F...skgltlItGpNGaGKTTildAi 39 
                 F     gl+ I Gp G+GK+T+l A+
  KOO23503.1 769 FtlpQGGLVGIGGPVGSGKSTLLSAL 794
                 3446779****************997 PP

  == domain 2  score: 11.6 bits;  conditional E-value: 0.00035
      AAA_23   18 skgltlItGpNGaGKTTildAi 39  
                  +  +  I+G +GaGK++il ++
  KOO23503.1 1374 ETQMIGIVGRTGAGKSSILVCL 1395
                  678899************9775 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.2   0.0   0.00073       0.6       2      35 ..     777     817 ..     776     831 .. 0.69
   2 !    9.1   0.1    0.0016       1.3       2      19 ..    1378    1395 ..    1377    1408 .. 0.85

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.00073
                 EEEEESTTSSHHHHHHHHHT.....S.TEEE.SSSTTSSSS CS
    MMR_HSR1   2 vaivGrpNvGKStLinaltg.....e.kaiv.sdkpgtTrd 35 
                 v+i G   +GKStL++al+g     + ++ v ++++ +T++
  KOO23503.1 777 VGIGGPVGSGKSTLLSALVGdvprlQgRCVVrGSIALCTQE 817
                 7899***************9333331333333555555555 PP

  == domain 2  score: 9.1 bits;  conditional E-value: 0.0016
                  EEEEESTTSSHHHHHHHH CS
    MMR_HSR1    2 vaivGrpNvGKStLinal 19  
                  ++ivGr+ +GKS+++  l
  KOO23503.1 1378 IGIVGRTGAGKSSILVCL 1395
                  89***********99766 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.4   0.5   0.00025       0.2      22      42 ..     774     794 ..     765     796 .. 0.79
   2 !    7.2   0.0    0.0052       4.2      24      39 ..    1377    1392 ..    1365    1398 .. 0.81

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00025
      AAA_29  22 kgatlltGpsGsGKSTllDAi 42 
                  g + + Gp GsGKSTll A+
  KOO23503.1 774 GGLVGIGGPVGSGKSTLLSAL 794
                 4477799***********886 PP

  == domain 2  score: 7.2 bits;  conditional E-value: 0.0052
      AAA_29   24 atlltGpsGsGKSTll 39  
                  ++ ++G++G+GKS++l
  KOO23503.1 1377 MIGIVGRTGAGKSSIL 1392
                  5669**********98 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.6   0.3     0.022        18      10      27 ..     779     796 ..     773     959 .. 0.84
   2 !    9.9   0.0     0.001      0.85       6     112 ..    1376    1523 ..    1373    1547 .. 0.72

  Alignments for each domain:
  == domain 1  score: 5.6 bits;  conditional E-value: 0.022
      AAA_22  10 vtGesGtGKTtllrrlle 27 
                 + G++G+GK+tll  l+ 
  KOO23503.1 779 IGGPVGSGKSTLLSALVG 796
                 679*********998875 PP

  == domain 2  score: 9.9 bits;  conditional E-value: 0.001
      AAA_22    6 gilvvtGesGtGKTtllrrlleqldeeakaee.....................erpevv.......fvtlpsstsskdllrellralglelka.... 70  
                  +++ ++G +G+GK+  l  l + ++ ++ a                       ++++v+         +++ +++ ++l+ ++ +a  +   +    
  KOO23503.1 1376 QMIGIVGRTGAGKSSILVCLYRLAELRSGAIIidgldlarvplptlrarlaiiPQDPVLftgtlrsNLDPTDLCTDEELWAAMRQAGMEAPMKqhpd 1472
                  67889***********999999998777777799999999999999999999966666666666666666666677777666666666555558999 PP

      AAA_22   71 .......erlsseell.ealeqalrarav.ielliiDEaqh.lrseealeeL 112 
                         er+ +  +  ++l   +ra  +  ++l++DEa   +  +e    +
  KOO23503.1 1473 glkrpieERGGNLSMGqRQLLCLCRALLRkARVLVLDEATAsV-DMESDALI 1523
                  999999966666666658888888888888889*****98877.45544444 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.6   0.1     0.017        14     100     122 ..     775     797 ..     756     808 .. 0.80
   2 !    9.5   0.0     0.001      0.85      96     129 ..    1372    1405 ..    1346    1409 .. 0.86

  Alignments for each domain:
  == domain 1  score: 5.6 bits;  conditional E-value: 0.017
                  SEEEEECSTTSSHHHHHHHHCTT CS
  RsgA_GTPase 100 ktsvlvGqSGvGKStLinallpe 122
                   ++ + G+ G GKStL+ al+++
   KOO23503.1 775 GLVGIGGPVGSGKSTLLSALVGD 797
                  5666889*************986 PP

  == domain 2  score: 9.5 bits;  conditional E-value: 0.001
                   HCTTSEEEEECSTTSSHHHHHHHHCTT-----S- CS
  RsgA_GTPase   96 llkdktsvlvGqSGvGKStLinallpelelktge 129 
                   ll+ +++ +vG +G+GKS+++  l   +el+ g+
   KOO23503.1 1372 LLETQMIGIVGRTGAGKSSILVCLYRLAELRSGA 1405
                   68889999*************9998877777666 PP

>> NB-ARC  NB-ARC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.6   0.1    0.0048       3.9      22      51 ..     776     805 ..     768     914 .. 0.64
   2 ?    4.9   0.0     0.015        12       8      37 ..    1366    1392 ..    1359    1403 .. 0.76
   3 ?   -0.1   0.0      0.51   4.1e+02      94     119 ..    1493    1518 ..    1474    1549 .. 0.75

  Alignments for each domain:
  == domain 1  score: 6.6 bits;  conditional E-value: 0.0048
                 EEEEEESTTSSHHHHHHHHCCSHCCCCCCB CS
      NB-ARC  22 vvalvGmgGvGKttlakqilnksdevegrF 51 
                 +v++ G  G+GK+tl++  + +   ++gr 
  KOO23503.1 776 LVGIGGPVGSGKSTLLSALVGDVPRLQGRC 805
                 7999**************999999998864 PP

  == domain 2  score: 4.9 bits;  conditional E-value: 0.015
                  HHHHHHCTTTSCSEEEEEEESTTSSHHHHH CS
      NB-ARC    8 viekLlekdelqslvvalvGmgGvGKttla 37  
                  +i +L    e q  ++++vG+ G GK+ ++
  KOO23503.1 1366 LIRQLT-LLETQ--MIGIVGRTGAGKSSIL 1392
                  555555.55667..9************986 PP

  == domain 3  score: -0.1 bits;  conditional E-value: 0.51
                  HHHHHHCCCTTEEEEEEEE-SHHHH. CS
      NB-ARC   94 rklvrlLltkrfllvlDDVweeedwd 119 
                    l+r+Ll+k  +lvlD    ++d++
  KOO23503.1 1493 LCLCRALLRKARVLVLDEATASVDME 1518
                  569*******999****987777754 PP

>> cobW  CobW/HypB/UreG, nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.6   0.1   0.00038      0.31       3      21 ..     777     795 ..     776     814 .. 0.83
   2 ?    3.6   0.1     0.054        44       2      33 ..    1377    1408 ..    1376    1414 .. 0.88

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00038
                 EEEEESTTCCHHHHHHHHH CS
        cobW   3 tvltGflGsGKTtLlnhll 21 
                 ++++G++GsGK+tLl++l+
  KOO23503.1 777 VGIGGPVGSGKSTLLSALV 795
                 579*************998 PP

  == domain 2  score: 3.6 bits;  conditional E-value: 0.054
                  EEEEEESTTCCHHHHHHHHHCT--SS-EEEEE CS
        cobW    2 vtvltGflGsGKTtLlnhllenraglklaviv 33  
                  +++++G  G+GK+++l  l + ++ ++ a+i+
  KOO23503.1 1377 MIGIVGRTGAGKSSILVCLYRLAELRSGAIII 1408
                  5789*************999999999999887 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.9   0.1     0.023        19      20      40 ..     776     796 ..     768     812 .. 0.78
   2 ?   -0.1   0.0      0.82   6.7e+02      68     102 ..     909     952 ..     870     957 .. 0.63
   3 ?    5.6   0.0     0.014        12      10      45 ..    1367    1402 ..    1364    1416 .. 0.81
   4 ?   -1.8   0.0       2.7   2.2e+03      84     113 ..    1498    1527 ..    1457    1538 .. 0.77

  Alignments for each domain:
  == domain 1  score: 4.9 bits;  conditional E-value: 0.023
      AAA_30  20 vavltGpAGtGKttalkalre 40 
                 ++ + Gp G+GK+t+l+al+ 
  KOO23503.1 776 LVGIGGPVGSGKSTLLSALVG 796
                 67789************9975 PP

  == domain 2  score: -0.1 bits;  conditional E-value: 0.82
      AAA_30  68 ieastiakllkrlk..........grarlepgtllivDEagmvdt 102
                 + a+ i  ll++ +          + +  e +++l+ DEag v +
  KOO23503.1 909 LVAQCITGLLRQRGalvvfvthhlH-WLHECDHVLMLDEAGKVKA 952
                 3555555566444477777776432.2233449********9976 PP

  == domain 3  score: 5.6 bits;  conditional E-value: 0.014
      AAA_30   10 vealltsgdrvavltGpAGtGKttalkalreaweaa 45  
                  +++l+  + ++  ++G+ G+GK+ +l  l +++e +
  KOO23503.1 1367 IRQLTLLETQMIGIVGRTGAGKSSILVCLYRLAELR 1402
                  6777777888999************99888877766 PP

  == domain 4  score: -1.8 bits;  conditional E-value: 2.7
      AAA_30   84 arlepgtllivDEagmvdtkqlaallkaae 113 
                  a l+++++l+ DEa      + +al+++  
  KOO23503.1 1498 ALLRKARVLVLDEATASVDMESDALIQQTL 1527
                  4567889******98776666666666655 PP

>> TrwB_AAD_bind  Type IV secretion-system coupling protein DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.8   0.0     0.026        21      19      48 ..     778     807 ..     775     822 .. 0.92
   2 ?    6.7   0.1    0.0035       2.9      13      48 ..    1373    1408 ..    1370    1413 .. 0.86

  Alignments for each domain:
  == domain 1  score: 3.8 bits;  conditional E-value: 0.026
  TrwB_AAD_bind  19 livGttGsGKtqalekllrairargdraiv 48 
                     i G +GsGK++ l++l+  + + + r++v
     KOO23503.1 778 GIGGPVGSGKSTLLSALVGDVPRLQGRCVV 807
                    57899****************999999998 PP

  == domain 2  score: 6.7 bits;  conditional E-value: 0.0035
  TrwB_AAD_bind   13 retqhilivGttGsGKtqalekllrairargdraiv 48  
                      etq i ivG tG+GK+  l  l r ++ r   +i+
     KOO23503.1 1373 LETQMIGIVGRTGAGKSSILVCLYRLAELRSGAIII 1408
                     599******************999999888765554 PP

>> T2SSE  Type II/IV secretion system protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.4   0.1    0.0013         1     132     159 ..     777     804 ..     767     808 .. 0.82
   2 ?    1.5   0.1      0.15   1.2e+02     115     151 ..    1360    1397 ..    1302    1408 .. 0.75

  Alignments for each domain:
  == domain 1  score: 8.4 bits;  conditional E-value: 0.0013
       T2SSE 132 ilvsGgTgsGKttllyallkeinksder 159
                 + + G+ gsGK+tll al+  ++  + r
  KOO23503.1 777 VGIGGPVGSGKSTLLSALVGDVPRLQGR 804
                 5588***************999887555 PP

  == domain 2  score: 1.5 bits;  conditional E-value: 0.15
       T2SSE  115 kekiaevlrka.vrerglilvsGgTgsGKttllyallk 151 
                  +++++ ++r+  + e ++i + G Tg GK+ +l  l  
  KOO23503.1 1360 TDTLNFLIRQLtLLETQMIGIVGRTGAGKSSILVCLYR 1397
                  4555555555414567889999********99866544 PP

>> Dynamin_N  Dynamin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6   0.0    0.0088       7.2       3      21 ..     779     797 ..     777     819 .. 0.87
   2 ?    4.1   0.1     0.053        43       1      19 [.    1378    1396 ..    1378    1408 .. 0.79

  Alignments for each domain:
  == domain 1  score: 6.6 bits;  conditional E-value: 0.0088
                 EEEBTTTTHHHHHHHHHTS CS
   Dynamin_N   3 vvGsqSsGKSSvlnaLlge 21 
                 + G + sGKS++l aL+g+
  KOO23503.1 779 IGGPVGSGKSTLLSALVGD 797
                 569999***********97 PP

  == domain 2  score: 4.1 bits;  conditional E-value: 0.053
                  EEEEEBTTTTHHHHHHHHH CS
   Dynamin_N    1 iavvGsqSsGKSSvlnaLl 19  
                  i +vG + +GKSS+l  L 
  KOO23503.1 1378 IGIVGRTGAGKSSILVCLY 1396
                  789***********96665 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.2   0.1    0.0041       3.4       1      18 [.     777     794 ..     777     830 .. 0.87
   2 ?    2.7   0.0      0.21   1.7e+02       1      25 [.    1378    1404 ..    1378    1422 .. 0.79

  Alignments for each domain:
  == domain 1  score: 8.2 bits;  conditional E-value: 0.0041
      AAA_18   1 IlltGtpGvGKttlakeL 18 
                 +++ G+ G+GK+tl  +L
  KOO23503.1 777 VGIGGPVGSGKSTLLSAL 794
                 689***********9999 PP

  == domain 2  score: 2.7 bits;  conditional E-value: 0.21
      AAA_18    1 IlltGtpGvGKttlakeLskrlgf..g 25  
                  I++ G  G+GK+++   L ++ ++  g
  KOO23503.1 1378 IGIVGRTGAGKSSILVCLYRLAELrsG 1404
                  89************9999776544444 PP

>> Zeta_toxin  Zeta toxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.1   0.1     0.015        12      19      47 ..     777     806 ..     772     808 .. 0.81
   2 ?    4.0   0.0     0.032        26      18      51 ..    1377    1410 ..    1373    1429 .. 0.80

  Alignments for each domain:
  == domain 1  score: 5.1 bits;  conditional E-value: 0.015
  Zeta_toxin  19 illgGqpGAGKselaellkdele.rqgnvv 47 
                 + +gG  G+GKs+l+++l  ++   qg++v
  KOO23503.1 777 VGIGGPVGSGKSTLLSALVGDVPrLQGRCV 806
                 5689*************9988875566665 PP

  == domain 2  score: 4.0 bits;  conditional E-value: 0.032
  Zeta_toxin   18 lillgGqpGAGKselaellkdelerqgnvvrldp 51  
                  +i ++G +GAGKs+++  l +  e +++++ +d+
  KOO23503.1 1377 MIGIVGRTGAGKSSILVCLYRLAELRSGAIIIDG 1410
                  66789**********9888777776777777775 PP

>> ATP-synt_ab  ATP synthase alpha/beta family, nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.0   0.0      0.01       8.3       5      38 ..     765     798 ..     763     977 .. 0.80
   2 ?    3.1   0.0     0.077        63      10      47 ..    1371    1409 ..    1364    1544 .. 0.83

  Alignments for each domain:
  == domain 1  score: 6.0 bits;  conditional E-value: 0.01
                  HHHHS-EBTT-EEEEEESTTSSHHHHHHHHHHHS CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  ATP-synt_ab   5 lDalfpivqGqrtlipgafgvGktvisqslskqs 38 
                  +D+ f++ qG+ ++i g  g Gk++++++l+   
   KOO23503.1 765 VDLSFTLPQGGLVGIGGPVGSGKSTLLSALVGDV 798
                  8999***********************9998765 PP

  == domain 2  score: 3.1 bits;  conditional E-value: 0.077
                   -EBTT-EEEEEESTTSSHHHHHHHHHHHSSTSS.EEEEE CS
                   xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxx RF
  ATP-synt_ab   10 pivqGqrtlipgafgvGktvisqslskqsnsdd.aiiyv 47  
                   ++ + q ++i+g  g Gk+ i+  l + ++ ++ aii+ 
   KOO23503.1 1371 TLLETQMIGIVGRTGAGKSSILVCLYRLAELRSgAIIID 1409
                   6778899***************99999988777677765 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.5   0.1    0.0017       1.4      29      57 ..     770     798 ..     753     811 .. 0.86
   2 ?   -0.6   0.3         1   8.5e+02     131     189 ..     879     932 ..     840     936 .. 0.76
   3 ?    0.8   0.0      0.39   3.1e+02      30      53 ..    1372    1395 ..    1358    1398 .. 0.76

  Alignments for each domain:
  == domain 1  score: 8.5 bits;  conditional E-value: 0.0017
      AAA_25  29 llpagelallaGapgtGKttlaldlalav 57 
                  lp g+l+ + G+ g+GK+tl++ l+ +v
  KOO23503.1 770 TLPQGGLVGIGGPVGSGKSTLLSALVGDV 798
                 589********************998776 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 1
      AAA_25 131 daleaaieevegvrlvviDplsralggdensnsdvgalvealeriarrtgaavllvhHv 189
                  al++a+ +  ++ +v +D + +a++++   ++ v+++++ l r  +r    v+++hH+
  KOO23503.1 879 VALARACYA--RASVVLLDDVLSAVDAEVG-AHLVAQCITGLLR--QRGALVVFVTHHL 932
                 457777777..3799999999999988665.7788888888877..3455567777776 PP

  == domain 3  score: 0.8 bits;  conditional E-value: 0.39
      AAA_25   30 lpagelallaGapgtGKttlaldl 53  
                  l +   + ++G++g+GK+ +++ l
  KOO23503.1 1372 LLETQMIGIVGRTGAGKSSILVCL 1395
                  4566677799*********99876 PP

>> DUF87  Helicase HerA, central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.3   0.1       1.2   9.5e+02      27      44 ..     778     795 ..     777     806 .. 0.83
   2 ?    8.8   0.2     0.002       1.6      25      59 ..    1377    1409 ..    1371    1410 .. 0.74

  Alignments for each domain:
  == domain 1  score: -0.3 bits;  conditional E-value: 1.2
       DUF87  27 AilgsTGsGKSntvavLl 44 
                 +i g  GsGKS++ + L+
  KOO23503.1 778 GIGGPVGSGKSTLLSALV 795
                 566777*******99987 PP

  == domain 2  score: 8.8 bits;  conditional E-value: 0.002
       DUF87   25 HlAilgsTGsGKSntvavLleellekkgatililD 59  
                   ++i+g+TG+GKS     L + l+ + ++  +i+D
  KOO23503.1 1377 MIGIVGRTGAGKSSILVCLYR-LA-ELRSGAIIID 1409
                  589**********99887765.45.4555555555 PP

>> SbcCD_C  Putative exonuclease SbcCD, C subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.0   0.0      0.31   2.5e+02      20      79 ..     858     904 ..     847     913 .. 0.64
   2 ?    3.4   0.0      0.11        91      29      55 ..    1106    1132 ..    1090    1140 .. 0.86
   3 ?    5.7   0.1     0.021        17      63      82 ..    1502    1521 ..    1463    1529 .. 0.73

  Alignments for each domain:
  == domain 1  score: 2.0 bits;  conditional E-value: 0.31
     SbcCD_C  20 dgkekelsrssgtlSGGekqflaylalaaalaalyssaegrepalrlvfLDEAFsklDee 79 
                  g  +e+ ++  +lSGG+k   a +ala a  a            ++v+LD+  s +D+e
  KOO23503.1 858 AGDATEIGERGVNLSGGQK---ARVALARACYARA----------SVVLLDDVLSAVDAE 904
                 4555677778889999999...6666664433332..........346666666666665 PP

  == domain 2  score: 3.4 bits;  conditional E-value: 0.11
     SbcCD_C   29 ssgtlSGGekqflaylalaaalaalys 55  
                   + + SGG+  f +++ +aaal+++++
  KOO23503.1 1106 PFHEISGGQPWFYLAVYVAAALVSALC 1132
                  56788*****************99876 PP

  == domain 3  score: 5.7 bits;  conditional E-value: 0.021
     SbcCD_C   63 alrlvfLDEAFsklDeesia 82  
                  + r+++LDEA +++D es a
  KOO23503.1 1502 KARVLVLDEATASVDMESDA 1521
                  4689***********99865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1585 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       727  (0.0405488); expected 358.6 (0.02)
Passed bias filter:                      469  (0.0261587); expected 358.6 (0.02)
Passed Vit filter:                        73  (0.00407162); expected 17.9 (0.001)
Passed Fwd filter:                        22  (0.00122706); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              22  [number of targets reported over threshold]
# CPU time: 1.01u 0.28s 00:00:01.29 Elapsed: 00:00:00.44
# Mc/sec: 10740.96
//
Query:       KOO23504.1  [L=323]
Description: cytosolic 5 -nucleotidase iii [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.7e-34  118.8   0.0    3.8e-34  118.3   0.0    1.2  1  UMPH-1           Pyrimidine 5'-nucleotidase (UMPH-1)
    2.1e-12   47.9   0.1    4.6e-12   46.7   0.1    1.6  1  HAD              haloacid dehalogenase-like hydrolase
     0.0026   17.9   0.0        0.4   10.8   0.0    2.4  2  HAD_2            Haloacid dehalogenase-like hydrolase
     0.0094   15.4   0.0        1.1    8.6   0.0    2.7  2  Put_Phosphatase  Putative Phosphatase
  ------ inclusion threshold ------
      0.016   15.5   0.1       0.08   13.2   0.1    2.3  1  Hydrolase        haloacid dehalogenase-like hydrolase


Domain annotation for each model (and alignments):
>> UMPH-1  Pyrimidine 5'-nucleotidase (UMPH-1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  118.3   0.0   1.1e-37   3.8e-34      60     241 ..     105     286 ..     102     291 .. 0.91

  Alignments for each domain:
  == domain 1  score: 118.3 bits;  conditional E-value: 1.1e-37
      UMPH-1  60 veWwskshaLlieqklkkee.iaevvkeskialrdgveelfekleklnvPvlifsaGlgdvleevlrqanvvysnvkvvsnfldfdedGvlkgfk.dkl 156
                 veWw ++h+L+++ +++k + i  +v+e k++ r g+ el+++l++l++Pvli saGl+dv+ee lrq++ + +nv v sn+l++  d + k+++ ++ 
  KOO23504.1 105 VEWWDRAHSLMVQYGVPKRQlIPRLVREGKMTPRPGALELLRRLQELDIPVLIVSAGLSDVIEEWLRQHGALSENVTVCSNRLNYAADMTPKSVSpEPP 203
                 79**************98763789*********************************************************************984689 PP

      UMPH-1 157 ihvfnknesvldgteyfdqlkkrtnvillGDslGDlsmadGvpevetilkiGflndkveksldkYldafDivlvdDe.tldvvnai 241
                 i  f+k  +  +++++f+q  +r+++i+lGDs+ D++ ++ v  +e  l++Gfln + +  l++  +afD v++ D+ +l  v ++
  KOO23504.1 204 ITSFTKAYAYSSASSFFEQHATRKHLIVLGDSVTDVDASKHV-PYEDFLSVGFLNSRLDGILHS--QAFDAVVLGDHgSLLPVADL 286
                 ******************************************.58899***********99975..89**8877765155545555 PP

>> HAD  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.7   0.1   1.3e-15   4.6e-12       2     186 ..      57     241 ..      56     243 .. 0.72

  Alignments for each domain:
  == domain 1  score: 46.7 bits;  conditional E-value: 1.3e-15
         HAD   2 lfDfDgTLldgdsle...lllrfllrrgaprlwralreklllal..frellrldraglaelleallaglseelaaelerfvaevirpklldpgalella 95 
                 + DfD TL++gds     l  + ++   + r     +  +ll++  + ++   +  ++a+ l+  ++  + +l+ +l r +  + +p+   pgalell+
  KOO23504.1  57 ITDFDATLTTGDSEQchdLCGFSHVMPADFRS--KFA--PLLDWaaNPDIDGVEWWDRAHSLMVQYGVPKRQLIPRLVREG--KMTPR---PGALELLR 146
                 67*********999966644443443333222..222..333331123333333344444455444444488888888888..34444...8******* PP

         HAD  96 ahraaGdrvvvvSgglrplvepllaelg..adev.lat.elevddrltgelglegkpvrgegkvaalrewlaaegegidleevvayGDspsDlpl 186
                 + ++  ++v +vS+gl+ ++e++l+++g  +++v +++ +l + +++t +   +++p+    k+ a  +     +++++++++++ GDs++D+ +
  KOO23504.1 147 RLQELDIPVLIVSAGLSDVIEEWLRQHGalSENVtVCSnRLNYAADMTPKSVSPEPPITSFTKAYAYSSASSFFEQHATRKHLIVLGDSVTDVDA 241
                 ****************************996666655558888889999999999999999999999998888888889999**********987 PP

>> HAD_2  Haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.8   0.0   0.00011       0.4      77     118 ..     134     175 ..     119     189 .. 0.89
   2 !    4.5   0.0     0.009        32     148     170 ..     222     244 ..     205     247 .. 0.89

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00011
       HAD_2  77 evkpydgvkelLeeLkeagyklgivTsksreaveekleqlgi 118
                 +++p +g+ elL  L+e ++ + iv+ + ++++ee l+q+g 
  KOO23504.1 134 KMTPRPGALELLRRLQELDIPVLIVSAGLSDVIEEWLRQHGA 175
                 6799*********************************99986 PP

  == domain 2  score: 4.5 bits;  conditional E-value: 0.009
       HAD_2 148 lklkkeeviyvGDsptDieaakk 170
                 +++++++ i+ GDs tD+ a+k+
  KOO23504.1 222 QHATRKHLIVLGDSVTDVDASKH 244
                 6889999*************996 PP

>> Put_Phosphatase  Putative Phosphatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.6   0.0    0.0003       1.1      43     122 ..     105     185 ..      54     192 .. 0.62
   2 ?    3.3   0.0     0.013        47     165     194 ..     222     251 ..     213     255 .. 0.85

  Alignments for each domain:
  == domain 1  score: 8.6 bits;  conditional E-value: 0.0003
  Put_Phosphatase  43 nelmdrvlkelheqgvsead.ikkvlr..siplspglvelikslakkkleldliiiSDaNsffieeileaagledlFseiftN 122
                       e+ dr    + + gv +++ i + +r  +++  pg +el++ l  ++l + + i+S   s  iee+l+++g  +    + +N
       KOO23504.1 105 VEWWDRAHSLMVQYGVPKRQlIPRLVRegKMTPRPGALELLRRL--QELDIPVLIVSAGLSDVIEEWLRQHGALSENVTVCSN 185
                      4566666666666665444414455552357888999*******..8899*********************987777666666 PP

  == domain 2  score: 3.3 bits;  conditional E-value: 0.013
  Put_Phosphatase 165 egveyerliYvGDganDlCpvlklrekDva 194
                      + ++ ++li +GD+  D+ ++++   +D+ 
       KOO23504.1 222 QHATRKHLIVLGDSVTDVDASKHVPYEDFL 251
                      556789***************999999986 PP

>> Hydrolase  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.1   2.2e-05      0.08     112     157 ..     132     181 ..      16     245 .. 0.64

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 2.2e-05
                 HHHHTHHBHTTHHHHHHHHHHTTEEEEEEESSEHHHHHHHHHHTT......G CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx......x RF
   Hydrolase 112 tiadplkvkpeaaeavasLkaagievvlltgdnpetaeraanqlG......d 157
                 + + +  ++p+a e++++L++  i+v +++ + +   e+ ++q G       
  KOO23504.1 132 EGKMT--PRPGALELLRRLQELDIPVLIVSAGLSDVIEEWLRQHGalsenvT 181
                 45555..9*************************************4433221 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (323 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       460  (0.0256568); expected 358.6 (0.02)
Passed bias filter:                      435  (0.0242624); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.51u 0.24s 00:00:00.75 Elapsed: 00:00:00.41
# Mc/sec: 2336.42
//
Query:       KOO23505.1  [L=1565]
Description: voltage-gated ion channel superfamily [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
     8e-202  667.1  72.1    2.8e-58  197.1  10.4    4.1  4  Ion_trans    Ion transport protein
    6.6e-22   77.8  61.6    3.2e-12   45.9   0.3    9.9 10  PKD_channel  Polycystin cation channel
    1.2e-06   28.1   0.0      3e-06   26.9   0.0    1.7  1  GPHH         Voltage-dependent L-type calcium channel, IQ-ass
  ------ inclusion threshold ------
       0.14   12.0   0.2       0.37   10.7   0.2    1.6  1  Phage_30_8   Phage GP30.8 protein
        8.9    6.3  12.5        1.5    8.8   0.1    4.6  4  Ninjurin     Ninjurin


Domain annotation for each model (and alignments):
>> Ion_trans  Ion transport protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  159.1  14.4     3e-50   1.1e-46       4     240 ..      40     301 ..      36     305 .. 0.92
   2 !  160.1  11.6   1.4e-50   5.2e-47       4     234 ..     330     545 ..     327     553 .. 0.94
   3 !  197.1  10.4   7.7e-62   2.8e-58       1     244 [.     790    1065 ..     790    1066 .. 0.93
   4 !  169.6  11.7   1.8e-53   6.5e-50       4     243 ..    1127    1378 ..    1125    1380 .. 0.92

  Alignments for each domain:
  == domain 1  score: 159.1 bits;  conditional E-value: 3e-50
                 HHHHHHHHHHHHHHHHHCCCSSSSHHHHC..HHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHCHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
   Ion_trans   4 felfilllillncvflaletyfpedelek..tileilelvftaiftlemllkilalgllikkrYlrdpwnilDflvvlpsllslvlseesllllsvlrl 100
                 f+ fil++i +n+++++ +++ + de+++   i+  +el+f++ift+em +ki alg+     Y++dpwn+lD +vv+ +++ ++l   + ++ s lr+
  KOO23505.1  40 FDAFILMIIGCNTIMMMTDSPLDTDETSDkaMIIAKMELIFNCIFTIEMSIKITALGC---SDYVKDPWNLLDATVVTSAWAPYFLP--TSGNYSWLRA 133
                 899***************9999998888899999************************...*********************99764..48******** PP

                 HGGGGGGHHHCHSHHHHHHHHHH..HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCC.......................CC..SCCSTSSSTTT CS
   Ion_trans 101 frvlrllklisrleglrtlvtal..irsvkdllnvlllllvvlfifaligvqlfkgklrek.......................ne..caktwenpnng 172
                 +rvlr+l++++rl++l++lv++l  +++++ l nv +l++++lf+f+++gv++f+gkl+ +                       +e  c++ + np +g
  KOO23505.1 134 VRVLRALRTVNRLPSLKALVNTLlsFETLQGLSNVSVLFCFFLFLFGILGVNMFAGKLHFRctepgssewvddtavcatsadceGEqtCEYYEINPADG 232
                 *********************873368*********************************9999999888888877777666651168*********** PP

                 SSSSSSHHHHHHHHHHHHTTSSHHHHHHHHHHHS.HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
   Ion_trans 173 ntnFdnfftallwlfrlmttegwgdilyatldek.skvaliyfvifiilgsflllNlliaviadnfqel 240
                   ++dn+++a++++f+  t egw d +y       + +++iy++ ++++g+++++ l++av+ d++ ++
  KOO23505.1 233 ALSYDNVLYAFVTIFQAVTLEGWVDQMYMLGITTnETTTVIYYIFLVVFGAMFIVQLFLAVMFDAYFKQ 301
                 *************************998755444599***************************99765 PP

  == domain 2  score: 160.1 bits;  conditional E-value: 1.4e-50
                 HHHHHHHHHHHHHHHHHCCCSSSSHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHCHSHHHHHHHHHHHHHHHHHHHHH..HHHHHHHHHHH CS
   Ion_trans   4 felfilllillncvflaletyfpedelektileilelvftaiftlemllkilalgllikkrYlrdpwnilDflvvlpsllslvlse..esllllsvlrl 100
                 +e++i+++i+ n+v+++l +  +++el+  i+e+ +++fta f +eml+k++a g+   ++Y+ + wn +Df+v+ +sl++l ++    +  +l+++r+
  KOO23505.1 330 WEWLIYVMIVGNTVTMCLIHEGQSEELT-YIVEMSNYFFTACFSVEMLVKLVANGC---GKYFESGWNTFDFFVTWCSLIDLLMEVygHETDVLRAMRV 424
                 9*****************9999999999.***************************...***********************77777788899999999 PP

                 HGGGGGGHHHCHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCCCCSCCSTSSSTTTSSSSSSHHHHHHHHHHHHTTSSHHHHH CS
   Ion_trans 101 frvlrllklisrleglrtlvtalirsvkdllnvlllllvvlfifaligvqlfkgklreknecaktwenpnngntnFdnfftallwlfrlmttegwgdil 199
                 +rvlrll+l + +++++    ++++++ +++n+  +l+++++++al+g++lf+gkl            ++  +tnFd f++a++++f++ ++e+w+d++
  KOO23505.1 425 ARVLRLLRLDNEMRRFEL---TIVKAADKVVNLSGILVLCIIVYALLGMELFGGKLG-----------EEPMRTNFDYFSNAFITVFVVTSGENWNDVY 509
                 999999999988888777...*******************************88888...........4559*************************** PP

                 HHHHHHS.HHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
   Ion_trans 200 yatldek.skvaliyfvifiilgsflllNlliavia 234
                   tl ++ + ++++yfv ++il++++l+Nl++a+i+
  KOO23505.1 510 GGTLPYSgGPLSVLYFVPLFILSNYVLVNLFVAIIS 545
                 **********************************95 PP

  == domain 3  score: 197.1 bits;  conditional E-value: 7.7e-62
                  SHHHHHHHHHHHHHHHHHHHCCCSSSSHHHHC.HHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHCHSHHHHHHHHHHHHHHHHHHHHH.HHHHHH CS
   Ion_trans    1 ssvfelfilllillncvflaletyfpedelek.tileilelvftaiftlemllkilalgllikkrYlrdpwnilDflvvlpsllslvlse.esllll 95  
                  ++ f+ fi+++i+l+++ lal+ +    ++     l++ + +ft+if++e++lk++++gl+++  Y++++wnilDf++v++s++s+ +   e ++++
  KOO23505.1  790 HQNFDNFIIFIIVLSSLSLALDMPTVAPDSQLaISLDYSDKFFTIIFVIEAALKLVTFGLFGEEGYFTSYWNILDFSIVTTSVISILSAGaEGFGVF 886 
                  688******************76666644444799***************************************************6555689**** PP

                  HHHHHHGGGGGGHHHCHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCC....................CCSCCSTSSSTTT CS
   Ion_trans   96 svlrlfrvlrllklisrleglrtlvtalirsvkdllnvlllllvvlfifaligvqlfkgklrek....................necaktwenpnng 172 
                  ++lr++r lr+l++i+r++gl+++v++l+r+++++lnv  ++++vl++++l+g+ + +g+l ++                    +e+a+ w np  +
  KOO23505.1  887 KALRAIRTLRPLRVIQRFKGLKMVVNSLFRAIPAVLNVGQVCFLVLIVYGLFGMTFLMGRLGHCnddtigakidcvgtftdesgEEKARWWGNP--D 981 
                  ****************************************************************888877777777766665544489999999..7 PP

                  SSSSSSHHHHHHHHHHHHTTSSHHHHHHHHHHHS............HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
   Ion_trans  173 ntnFdnfftallwlfrlmttegwgdilyatldek............skvaliyfvifiilgsflllNlliaviadnfqeltere 244 
                    nFd++++a+l+lf++ t e w+d++   +d+             + ++ +y +++i++++flllNl+++v+ +nf+ +++ e
  KOO23505.1  982 VANFDSIGYAMLTLFEMSTLEMWPDVMFLAMDSDptatgqplvqnqNAWMAVYIISWIVISAFLLLNLFVGVVLENFNAIRQAE 1065
                  79*****************************************************************************99976 PP

  == domain 4  score: 169.6 bits;  conditional E-value: 1.8e-53
                  HHHHHHHHHHHHHHHHHCCCSSSSHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHCHSHHHHHHHHHHHHHHHHH..........HHHHH CS
   Ion_trans    4 felfilllillncvflaletyfpedelektileilelvftaiftlemllkilalgllikkrYlrdpwnilDflvvlpsllsl..........vlsee 90  
                  fe f++ l++ln++++ l +y +++ ++  + ++++++ft+ ft em+lki +lgl   + Yl + wn++D + v+++l+                 
  KOO23505.1 1127 FEKFVISLVILNVFAMSLTYYGQPEYMS-VFSDYCDIFFTVAFTTEMVLKITGLGL---RQYLMSGWNVFDGTLVTIALAADalqgleslgiK---I 1216
                  99**********************9999.***************************...*****************99993323433433431...5 PP

                  HHHHHHHHHHHGGGGGGHHHCHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCCCCSCCSTSSSTTTSSSSSSHHHHHHHHH CS
   Ion_trans   91 sllllsvlrlfrvlrllklisrleglrtlvtalirsvkdllnvlllllvvlfifaligvqlfkgklreknecaktwenpnngntnFdnfftallwlf 187 
                    + +++lr+fr++rll+l+++ +gl  l+t+++ +v++l nv +ll+++l+i+ ++g++lf++             + +n + nF +f+ta+l+lf
  KOO23505.1 1217 DPGTVRMLRVFRIARLLRLMKMGGGLNRLITTIVVAVPALANVGVLLILFLYIYTILGIELFHNLP--------LHGDFINYDANFATFGTAMLTLF 1305
                  68************************************************************3333........35566788899************ PP

                  HHHTTSSHHHHHHHHHHHS.................HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
   Ion_trans  188 rlmttegwgdilyatldek.................skvaliyfvifiilgsflllNlliaviadnfqelter 243 
                  r++t+e ++ i+++ +  +                 + +a+++f++fi++ ++++lNl++av+ d+f+e +  
  KOO23505.1 1306 RCITGESYNGIMHDAMVTEahsepgrcsdaegtcgsPITAVVFFISFIVIEAMVMLNLIVAVVLDTFAEEEAA 1378
                  ********************************************************************98876 PP

>> PKD_channel  Polycystin cation channel
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.8   0.0   0.00015      0.55     207     254 ..      66     114 ..      60     124 .. 0.86
   2 ?   -0.4   0.5       0.1   3.6e+02     308     359 ..     135     188 ..     125     192 .. 0.74
   3 ?    1.5   3.7     0.027        95     365     423 ..     236     298 ..     230     301 .. 0.70
   4 !    8.1   0.5   0.00026      0.94     210     265 ..     356     412 ..     341     424 .. 0.83
   5 !   45.9   0.3   8.8e-16   3.2e-12     307     424 ..     422     549 ..     410     551 .. 0.87
   6 !    6.8   0.2   0.00063       2.2     221     261 ..     832     876 ..     821     880 .. 0.73
   7 !    8.2   0.7   0.00025      0.88     306     356 ..     891     941 ..     883     947 .. 0.88
   8 !    5.5   0.5    0.0016       5.8     364     426 .]     984    1061 ..     978    1061 .. 0.68
   9 !    6.6   0.3   0.00073       2.6     181     259 ..    1127    1203 ..    1122    1210 .. 0.74
  10 !   23.3   2.8   6.5e-09   2.3e-05     308     425 ..    1228    1374 ..    1218    1375 .. 0.84

  Alignments for each domain:
  == domain 1  score: 8.8 bits;  conditional E-value: 0.00015
                  HHHHHHHHHHHHHHHHHHHHHHHH-------.-------HHHHHHHHHH CS
  PKD_channel 207 lslflllievvfvvfvlyfvveeilkirker.asylrsvwnlldlaivv 254
                  +s + ++i  + ++f + f++e+ +ki   +   y+++ wnlld+ +v 
   KOO23505.1  66 TSDKAMIIAKMELIFNCIFTIEMSIKITALGcSDYVKDPWNLLDATVVT 114
                  5556677788899********************************9986 PP

  == domain 2  score: -0.4 bits;  conditional E-value: 0.1
                  HHHGGGGG--------------..----------HHHHHHHHHHHHHHHHHHSS CS
  PKD_channel 308 ttlkllkvlrfnktlslltktl..aralkdvlgfalvivilflayaqlgvllfG 359
                   +l++l+ ++  + l+ l +tl  ++ l+++  +++++  +++ +++lgv +f 
   KOO23505.1 135 RVLRALRTVNRLPSLKALVNTLlsFETLQGLSNVSVLFCFFLFLFGILGVNMFA 188
                  345555555555566777788844468999******************999986 PP

  == domain 3  score: 1.5 bits;  conditional E-value: 0.027
                  TSSHHHHHHHHHHHH....TT---HH.HHHHH-TTHHHHHHHHHHHHHHHHHHHHHHHHHHT-X CS
  PKD_channel 365 fsnlvksiltlfrli....lgdfqyt.elesgnrvLGpllllalvflvifillnlflaiindsy 423
                  + n   +++t+f+ +    + d  y   +   n+   +++++ lv++ ++ +++lfla++ d+y
   KOO23505.1 236 YDNVLYAFVTIFQAVtlegWVDQMYMlGI-TTNETTTVIYYIFLVVFGAMFIVQLFLAVMFDAY 298
                  55555555555544311123344444244.78999999***********************999 PP

  == domain 4  score: 8.1 bits;  conditional E-value: 0.00026
                  HHHHHHHHHHHHHHHHHHHHH-------.-------HHHHHHHHHHHHHHHHHHHHH CS
  PKD_channel 210 flllievvfvvfvlyfvveeilkirker.asylrsvwnlldlaivvlsvvlivlail 265
                    +++e+  ++f   f+ve+++k+  ++  +y++s wn  d+++   s++ +++ ++
   KOO23505.1 356 LTYIVEMSNYFFTACFSVEMLVKLVANGcGKYFESGWNTFDFFVTWCSLIDLLMEVY 412
                  3456688999999********************************999998888776 PP

  == domain 5  score: 45.9 bits;  conditional E-value: 8.8e-16
                  HHHHGGGGG------------------------HHHHHHHHHHHHHHHHHHSSSS-......STTSSHHHHHHHHHHHHTT---HH.....HHHHH-T CS
  PKD_channel 307 lttlkllkvlrfnktlslltktlaralkdvlgfalvivilflayaqlgvllfGtqa......snfsnlvksiltlfrlilgdfqyt.....elesgnr 393
                  + + ++l++lr+ ++++ +  t+ +a+++v+ ++ ++v+ +++ya lg+ lfG +        nf  + ++++t+f ++ +  +++      l + + 
   KOO23505.1 422 MRVARVLRLLRLDNEMRRFELTIVKAADKVVNLSGILVLCIIVYALLGMELFGGKLgeepmrTNFDYFSNAFITVFVVT-SGENWNdvyggTLPYSGG 518
                  5667999**********************************************87533333379***********7655.556777688898999999 PP

                  THHHHHHHHHHHHHHHHHHHHHHHHHHT-XX CS
  PKD_channel 394 vLGpllllalvflvifillnlflaiindsye 424
                   L++l+++ l +l+ ++l+nlf+aii + +e
   KOO23505.1 519 PLSVLYFVPLFILSNYVLVNLFVAIISWGWE 549
                  **************************99766 PP

  == domain 6  score: 6.8 bits;  conditional E-value: 0.00063
                  HHHHHHHHHH-----...--.-------HHHHHHHHHHHHHHHHH CS
  PKD_channel 221 fvlyfvveeilkirk...er.asylrsvwnlldlaivvlsvvliv 261
                  f + fv+e +lk+      + + y++s wn+ld+ iv  sv++i+
   KOO23505.1 832 FTIIFVIEAALKLVTfglFGeEGYFTSYWNILDFSIVTTSVISIL 876
                  44555555555444311144578*****************99875 PP

  == domain 7  score: 8.2 bits;  conditional E-value: 0.00025
                  HHHHHGGGGG------------------------HHHHHHHHHHHHHHHHH CS
  PKD_channel 306 flttlkllkvlrfnktlslltktlaralkdvlgfalvivilflayaqlgvl 356
                  ++ tl+ l+v++ +k l+++ + l+ra+++vl +  v ++++++y+ +g++
   KOO23505.1 891 AIRTLRPLRVIQRFKGLKMVVNSLFRAIPAVLNVGQVCFLVLIVYGLFGMT 941
                  567889999999999999999*************************99986 PP

  == domain 8  score: 5.5 bits;  conditional E-value: 0.0016
                   TTSSHHHHHHHHHHH....HTT---HH............HHHHH-TTHHHHHHHHHHHHHHHHHHHHHHHHHHT-XXXX CS
  PKD_channel  364 nfsnlvksiltlfrl....ilgdfqyt............elesgnrvLGpllllalvflvifillnlflaiindsyeev 426 
                   nf  +  ++ltlf++    ++ d+ +              +++ n ++  +++++ +++++f+llnlf+ ++ ++++++
   KOO23505.1  984 NFDSIGYAMLTLFEMstleMWPDVMFLamdsdptatgqpLVQNQNAWMA-VYIISWIVISAFLLLNLFVGVVLENFNAI 1061
                   6666666666665543333555555556666666667645555666665.578889999****************9975 PP

  == domain 9  score: 6.6 bits;  conditional E-value: 0.00073
                   EE--TTSS-EEEEEEEEE------SHHHHHHHHHHHHHHHHHHHHHHHHH-------.-------HHHHHHHHHHHHHHH CS
  PKD_channel  181 vEvpalGgvlpsvsvqsvkLlryvtklslflllievvfvvfvlyfvveeilkirker.asylrsvwnlldlaivvlsvvl 259 
                   +E++++  v+ +v  +s + + + + +s+f   + ++   f ++f+ e++lki   + ++yl s wn+ d  +v + +++
   KOO23505.1 1127 FEKFVISLVILNVFAMSLTYYGQPEYMSVFSDYCDIF---FTVAFTTEMVLKITGLGlRQYLMSGWNVFDGTLVTIALAA 1203
                   5666666666655555655566666666666665555...5568999**********99***********9999887765 PP

  == domain 10  score: 23.3 bits;  conditional E-value: 6.5e-09
                   HHHGGGGG------------------------HHHHHHHHHHHHHHHHHHSS.........SS-STTSSHHHHHHHHHHHHTT---HH........ CS
  PKD_channel  308 ttlkllkvlrfnktlslltktlaralkdvlgfalvivilflayaqlgvllfG.........tqasnfsnlvksiltlfrlilgdfqyt........ 386 
                    + +ll+++++   l+ l +t+  a+++++ + +++++++  y +lg+ lf          ++ +nf ++ +++ltlfr+i g+ +y+        
   KOO23505.1 1228 RIARLLRLMKMGGGLNRLITTIVVAVPALANVGVLLILFLYIYTILGIELFHnlplhgdfiNYDANFATFGTAMLTLFRCITGE-SYNgimhdamv 1322
                   3445666666666799999****************************998752222223336999*************998886.5666******* PP

                   .............HHHHH-TTHHHHHHHHHHHHHHHHHHHHHHHHHHT-XXX CS
  PKD_channel  387 .............elesgnrvLGpllllalvflvifillnlflaiindsyee 425 
                                e   g  +  ++++++++++ ++++lnl++a++ d+++e
   KOO23505.1 1323 teahsepgrcsdaEGTCGSPITAVVFFISFIVIEAMVMLNLIVAVVLDTFAE 1374
                   ***********8877778999****************************986 PP

>> GPHH  Voltage-dependent L-type calcium channel, IQ-associated
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.9   0.0   8.5e-10     3e-06       1      54 []    1390    1445 ..    1390    1445 .. 0.88

  Alignments for each domain:
  == domain 1  score: 26.9 bits;  conditional E-value: 8.5e-10
        GPHH    1 eFvrvWaeyDPeAtgrikvqdmyellrrlspPLGfGkkcPsrva..ykrlvrmnmp 54  
                  +Fv++W e DP At+++  +d+ +ll  l +PLG     P++ a    +l ++++p
  KOO23505.1 1390 NFVDAWKELDPDATHFMPTKDLKKLLLLLDAPLGYRDIPPADSAtlTEHLKSLEVP 1445
                  6**********************************988888877657777777766 PP

>> Phage_30_8  Phage GP30.8 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.2    0.0001      0.37      24      69 ..     328     375 ..     316     394 .. 0.79

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.0001
  Phage_30_8  24 delqwl..lravegdvvevettdgmsddftytievenfftgeiyrlns 69 
                  +  wl  ++ v   v  +   +g s+++ty +e+ n+f    + ++ 
  KOO23505.1 328 SKWEWLiyVMIVGNTVTMCLIHEGQSEELTYIVEMSNYFFTACFSVEM 375
                 445565226888889999*******************99877776654 PP

>> Ninjurin  Ninjurin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.0   0.5      0.24   8.5e+02      31      63 ..     265     297 ..     257     349 .. 0.62
   2 ?    8.8   0.1   0.00042       1.5      25      54 ..     782     811 ..     774     816 .. 0.90
   3 ?    2.5   0.1     0.039   1.4e+02      31      62 ..    1024    1056 ..    1021    1144 .. 0.74
   4 ?   -3.6   0.3       2.9   1.1e+04      48      63 ..    1350    1365 ..    1341    1382 .. 0.53

  Alignments for each domain:
  == domain 1  score: -0.0 bits;  conditional E-value: 0.24
    Ninjurin  31 lesgekskfyiallvLislSllLqvvvgillil 63 
                 ++++  + +y++ lv  ++  ++q+++++++  
  KOO23505.1 265 TTNETTTVIYYIFLVVFGAMFIVQLFLAVMFDA 297
                 444455566788888889999999999888754 PP

  == domain 2  score: 8.8 bits;  conditional E-value: 0.00042
    Ninjurin  25 sqLkavlesgekskfyiallvLislSllLq 54 
                  qL+a+l+ ++ ++f i+ +vL slSl+L 
  KOO23505.1 782 RQLRAILTHQNFDNFIIFIIVLSSLSLALD 811
                 6**********99999***********996 PP

  == domain 3  score: 2.5 bits;  conditional E-value: 0.039
    Ninjurin   31 lesgek.skfyiallvLislSllLqvvvgilli 62  
                  ++++++   +yi++ + is+ llL ++vg++l 
  KOO23505.1 1024 VQNQNAwMAVYIISWIVISAFLLLNLFVGVVLE 1056
                  567777577899****************99984 PP

  == domain 4  score: -3.6 bits;  conditional E-value: 2.9
    Ninjurin   48 slSllLqvvvgillil 63  
                  +  +++  +v++ li+
  KOO23505.1 1350 ISFIVIEAMVMLNLIV 1365
                  3333444444443333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1565 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       934  (0.0520944); expected 358.6 (0.02)
Passed bias filter:                      560  (0.0312343); expected 358.6 (0.02)
Passed Vit filter:                        48  (0.00267723); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 1.00u 0.27s 00:00:01.27 Elapsed: 00:00:00.44
# Mc/sec: 10692.07
//
Query:       KOO23506.1  [L=71]
Description: hypothetical protein Ctob_004927 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
     0.0089   16.0   0.1     0.0092   16.0   0.1    1.0  1  ATP-synt_A  ATP synthase A chain


Domain annotation for each model (and alignments):
>> ATP-synt_A  ATP synthase A chain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.1   5.1e-07    0.0092     136     167 ..      31      64 ..      17      71 .] 0.80

  Alignments for each domain:
  == domain 1  score: 16.0 bits;  conditional E-value: 5.1e-07
                 H.HHHHHHHHHH..HHHHHHHHHHHHHHHHHHHC CS
  ATP-synt_A 136 sefarpvsLalR..LfgNifAGelllallaglll 167
                  ++ r++sL+lR  L  Ni AG+ll+++l  l +
  KOO23506.1  31 DHVHRLISLTLRahLLDNIAAGHLLFLMLSELPV 64 
                 5689********999*************976642 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (71 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       163  (0.00909142); expected 358.6 (0.02)
Passed bias filter:                      131  (0.0073066); expected 358.6 (0.02)
Passed Vit filter:                         7  (0.000390429); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.32u 0.26s 00:00:00.58 Elapsed: 00:00:00.39
# Mc/sec: 541.09
//
Query:       KOO23507.1  [L=355]
Description: ump-cmp kinase-like protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.4e-43  147.3   0.0    4.7e-43  146.9   0.0    1.2  1  ADK              Adenylate kinase
    2.2e-34  118.8   0.0      4e-34  118.0   0.0    1.4  1  AAA_17           AAA domain
    1.6e-08   35.1   0.0    2.6e-08   34.5   0.0    1.3  1  AAA_18           AAA domain
    2.4e-06   27.7   0.0    4.1e-06   27.0   0.0    1.3  1  AAA_33           AAA domain
     0.0027   17.4   0.0       0.32   10.6   0.0    2.3  2  Thymidylate_kin  Thymidylate kinase
  ------ inclusion threshold ------
      0.069   12.4   0.0       0.13   11.5   0.0    1.5  1  Zeta_toxin       Zeta toxin


Domain annotation for each model (and alignments):
>> ADK  Adenylate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  146.9   0.0   1.6e-46   4.7e-43       1     150 [.     103     259 ..     103     260 .. 0.97

  Alignments for each domain:
  == domain 1  score: 146.9 bits;  conditional E-value: 1.6e-46
                 EEESTTSSHHHHHHHHHHHHTSEEEEHHHHHHHHHHCT-HHHHHHHHHHHTTSS--HHHHHHHHHHHHHCHGTTTEEEEESB-SSHHHHHHHHHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
         ADK   1 llGaPgaGKGtqaeklvkkyglahlstGdllRaevksgtelGkeakevmdkgelvpdevvvklvkeelekedkkkgfllDGfPRtveqaealeelleee 99 
                 +lG+PgaGKGtq++ +v+k g++hls+GdllRa+ +sg+ +G+++ e++++g++vp ev+vkl+ ++++++  +++ l+DGfPR++++ + +++++  +
  KOO23507.1 103 VLGGPGAGKGTQCSLIVEKCGYTHLSAGDLLRAARSSGSAQGQMIDEYIKEGKIVPVEVTVKLLVDAIKES-GAQRVLVDGFPRNTNNVSGWQQVV-GD 199
                 79*******************************************************************88.8899******************65.78 PP

                 TSEESEEEEEE--HHHHHHHHHT.........GSHHHHHHHHHHHHHHHHHHHHHHHHTT CS
                 xxxxxxxxxxxxxxxxxxxxxxx.........xxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
         ADK 100 kvkldlvleldvpeevlveRltg.........DneetvkkRletykkqtkplidyykkkg 150
                 + ++  vl  d+peev+ eRl++         Dn e++kkR++ty  +t+p+++yy++++
  KOO23507.1 200 SLTVGGVLFYDCPEEVMQERLLErgktsgrtdDNLESIKKRFKTYAMETTPVLQYYEHQQ 259
                 899*****************************************************9875 PP

>> AAA_17  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  118.0   0.0   1.3e-37     4e-34       1     136 []     104     238 ..     104     238 .. 0.92

  Alignments for each domain:
  == domain 1  score: 118.0 bits;  conditional E-value: 1.3e-37
                 EE-TTSSHHHHHHHHHHHHTEEEEEHHHHHHHHHHTTTS..HSSHHHHCTSHHHHHHHHHHHHHHHHHHHHHSSEEEEEE-SEEEETTEEEESSHHHHH CS
      AAA_17   1 lGgPGsGKgtqceklvekygfthlsaGdllreeakrggl..akardemrklpleekkelqkeaaekiaeeakkkgvlvdghprikeqagfldglpkevl 97 
                 lGgPG+GKgtqc+ +vek g+thlsaGdllr+  ++g++  ++ +++++++++++ + + k++ ++i+e ++ + vlvdg+pr+     +++g+++ v 
  KOO23507.1 104 LGGPGAGKGTQCSLIVEKCGYTHLSAGDLLRAARSSGSAqgQMIDEYIKEGKIVPVEVTVKLLVDAIKE-SGAQRVLVDGFPRN---TNNVSGWQQVVG 198
                 7********************************999975547788889999999999999****99998.6899********96...4467899999** PP

                 HHH..SEEEEEE--HHHHHHHHHHH.TTST-TS-SHHHHH CS
      AAA_17  98 eelkpdaiilleadpeeilerrlkd.rtrgrdddneesik 136
                 ++l +  +++ ++++e++ er+l++ +t+gr+ddn esik
  KOO23507.1 199 DSLTVGGVLFYDCPEEVMQERLLERgKTSGRTDDNLESIK 238
                 *************************99***********97 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.5   0.0   8.7e-12   2.6e-08       1     125 [.     101     235 ..     101     240 .. 0.88

  Alignments for each domain:
  == domain 1  score: 34.5 bits;  conditional E-value: 8.7e-12
      AAA_18   1 IlltGtpGvGKttlakeLskrlgf.gvnlrdvakenglllevdpe....aldeskrldedkldkll.daleenssaleegknlvidghlaeleseaakd 93 
                 +++ G pG+GK t +  + +++g+ +   +d+++  +++ + + +     ++e k++  +++ kll da++e       ++ +++dg++ +    + ++
  KOO23507.1 101 VFVLGGPGAGKGTQCSLIVEKCGYtHLSAGDLLRAARSSGSAQGQmideYIKEGKIVPVEVTVKLLvDAIKE-----SGAQRVLVDGFPRNTNNVSGWQ 194
                 7899*********************99999999999999999999888999999999999965544133333.....447999**********999999 PP

      AAA_18  94 ikk.........vvLtaspeelleRlekRgyeeakikenee 125
                  +           + ++++e++ eRl +Rg+++ ++ +n e
  KOO23507.1 195 QVVgdsltvggvLFYDCPEEVMQERLLERGKTSGRTDDNLE 235
                 8889*******9999********************998876 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.0   0.0   1.4e-09   4.1e-06       1     140 [.     100     241 ..     100     245 .. 0.80

  Alignments for each domain:
  == domain 1  score: 27.0 bits;  conditional E-value: 1.4e-09
      AAA_33   1 lvllvGlpGsGKstlaerllkklgavllssdtlrrrlfg...tdqqsktdytrvldr..lyqilnelarkalsagrnvildatnlsr.rerarflklar 93 
                 +v++ G pG+GK t    +++k g+++ls  +l+r+ +     + q + +y++  +   +  +++ l++   ++g++ +l  ++ ++ ++ + + +++ 
  KOO23507.1 100 VVFVLGGPGAGKGTQCSLIVEKCGYTHLSAGDLLRAARSsgsAQGQMIDEYIKEGKIvpVEVTVKLLVDAIKESGAQRVLVDGFPRNtNNVSGWQQVVG 198
                 899********************************9988566555556667763333335555656666667899999998999888899********9 PP

      AAA_33  94 rlgvpvrivvvetdeetlkeRlakRaangddrsevpeealdrqkarf 140
                 +      +++ +++ee+++eRl +R ++++     +  +l+  k+rf
  KOO23507.1 199 DSLTVGGVLFYDCPEEVMQERLLERGKTSG----RTDDNLESIKKRF 241
                 8888889********************976....3566666666666 PP

>> Thymidylate_kin  Thymidylate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.6   0.0   0.00011      0.32       3      55 ..     105     159 ..     103     180 .. 0.80
   2 !    4.6   0.0    0.0079        24     121     162 ..     206     248 ..     197     273 .. 0.84

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00011
                      ESTTSSHHHHHHHHHHHHHHTTE....EEEESSSTTSHHHHHHHHHHHTCS---HH CS
  Thymidylate_kin   3 GlDGaGKttqaellkerlkeegik...vvltrepggteiGekirelllkeeeleeq 55 
                      G  GaGK tq+ l++e++   +++    ++   ++g+  G++i+e+++ e ++ + 
       KOO23507.1 105 GGPGAGKGTQCSLIVEKCGYTHLSagdLLRAARSSGSAQGQMIDEYIK-EGKIVPV 159
                      5669*************999888877778888999999*********9.5555444 PP

  == domain 2  score: 4.6 bits;  conditional E-value: 0.0079
                      EEEEESSHHHHHTSCCTTSS.TTTSHHHHHHHHHHHHHHHHHH CS
  Thymidylate_kin 121 tflldvdpevalkRlakrde.ldeeeeeqldflrkvrerylel 162
                      +++ d+++ev  +Rl +r++ + +++   +++ ++++++++e 
       KOO23507.1 206 VLFYDCPEEVMQERLLERGKtSGRTDDNLESIKKRFKTYAMET 248
                      789999*************965577777788888888877764 PP

>> Zeta_toxin  Zeta toxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   4.5e-05      0.13      14      40 ..      96     122 ..      86     197 .. 0.89

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 4.5e-05
  Zeta_toxin  14 erPklillgGqpGAGKselaellkdel 40 
                  +P ++++ G+pGAGK++  +l+ ++ 
  KOO23507.1  96 PKPGVVFVLGGPGAGKGTQCSLIVEKC 122
                 79****************999999887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (355 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       462  (0.0257683); expected 358.6 (0.02)
Passed bias filter:                      431  (0.0240393); expected 358.6 (0.02)
Passed Vit filter:                        50  (0.00278878); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.47u 0.24s 00:00:00.71 Elapsed: 00:00:00.40
# Mc/sec: 2647.80
//
Query:       KOO23508.1  [L=389]
Description: alpha-1,3-mannosyl-glycoprotein 2-beta-n-acetylglucosaminyltransferase-like protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   9.7e-105  350.8   0.0   1.3e-104  350.3   0.0    1.1  1  GNT-I            GNT-I family
  ------ inclusion threshold ------
      0.015   15.1   0.0      0.025   14.4   0.0    1.3  1  Glycos_transf_2  Glycosyl transferase family 2
      0.017   15.0   0.1       0.13   12.1   0.1    2.3  1  Glyco_tranf_2_3  Glycosyltransferase like family 2
      0.094   11.7   0.0       0.14   11.1   0.0    1.2  1  SBP_bac_5        Bacterial extracellular solute-binding prote
       0.23   10.5   0.0         11    5.0   0.0    2.1  2  MGAT2            N-acetylglucosaminyltransferase II (MGAT2)


Domain annotation for each model (and alignments):
>> GNT-I  GNT-I family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  350.3   0.0  3.7e-108  1.3e-104      90     429 ..      23     375 ..      12     379 .. 0.88

  Alignments for each domain:
  == domain 1  score: 350.3 bits;  conditional E-value: 3.7e-108
       GNT-I  90 qakdviavlvlacsradavrrtvekllkyrpsaekfPlivsqdcsneevkkevlsygdk.vtyikhl.dlesiavePderkltayykiarhyklaldqv 186
                   ++ iav+v+a +r ++++++++++   +p  + fP++vsqd++n  v + vl+yg + + + +++  ++  +      k ++y  ++ hy +al  +
  KOO23508.1  23 LSPEAIAVVVIAYNRPQYLDEALKSINASHPGGSSFPVYVSQDGENGPVTNVVLKYGYRsLVHPRKIlSFDRGS---YLSKNQGYAYLSVHYGWALRTL 118
                 56789***************************************************954255555443444433...334568999999********** PP

       GNT-I 187 f...........vkkkfsrviileddleiapdffdyfeataslldrdksllavsaWndnGkkqfvdasapealyrsdffpGlGWllskktWaelePkWP 274
                 f               ++ viile+d+ +++dff yfea+a+ll++d++ll+vsa+ndnG+  f  +  p al+rsdffpGlGWlls+++W+el PkWP
  KOO23508.1 119 FgmgpsgasgakSAAIYAGVIILEEDIRVSTDFFAYFEAAAPLLESDPTLLCVSAFNDNGQDAFPGD--PRALHRSDFFPGLGWLLSRRLWDELRPKWP 215
                 *555444433222356999*********************************************999..****************************** PP

       GNT-I 275 ka..fWddWlrlkerrkgrqfirPeisrtmsfGkkGsskGqffsqylekiklndktvdfkkldlsylleenyakkfsaevkeakelqvedvvlkalk.. 369
                  a  fWddWlr+  +rkgr+ irPe+srt++fG  G+s Gqf+++yl+ki ln + vd+ + dlsyl++++y+  f++ + +a+ +   + + k+ +  
  KOO23508.1 216 EArgFWDDWLRETPQRKGRASIRPEVSRTVTFGAVGTSVGQFYQKYLAKISLNVRKVDWVTEDLSYLKQQSYDALFTEWLDKATAVPNLESARKVAEqd 314
                 7444**************************************************************************999988775544444433323 PP

       GNT-I 370 ekg.dvrvqykdqvdferiakklgiledlkdGvPraaykGivvfriqgrrvflvppdtvea 429
                  +g ++ ++y+d+ df ++ k+lg++edlk+GvPr+ay+G+v +ri+grr+fl+p   ve+
  KOO23508.1 315 REGaNLVLRYRDEADFVSMCKQLGLMEDLKAGVPRTAYHGVVLVRINGRRLFLAPGYKVEQ 375
                 4445999***********************************************9887765 PP

>> Glycos_transf_2  Glycosyl transferase family 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.4   0.0     7e-06     0.025       2      44 ..      30      73 ..      29      99 .. 0.85

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 7e-06
                     EEEEESS-TTTHHHHHHHHHHH.GGCCEEEEEEEEES-SSCHHH CS
  Glycos_transf_2  2 vviptyNeektlletlesllaq.dpypdfeiivvDDgStDetve 44
                     vv+++yN++++l e+l+s+ a  +  + f ++v  Dg++    +
       KOO23508.1 30 VVVIAYNRPQYLDEALKSINAShPGGSSFPVYVSQDGENGPVTN 73
                     9*********************9999999999999998655555 PP

>> Glyco_tranf_2_3  Glycosyltransferase like family 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.1   3.7e-05      0.13       2      50 ..      26      76 ..      25     228 .. 0.82

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 3.7e-05
  Glyco_tranf_2_3  2 rdlavlVptfneedvlgevlesllaqe.y.prvevvvvvdesdaetlevae 50
                       +av+V ++n++++l e l s+ a++   +++ v+v  d++   + +v+ 
       KOO23508.1 26 EAIAVVVIAYNRPQYLDEALKSINASHpGgSSFPVYVSQDGENGPVTNVVL 76
                     5699********************98644477******9999888877765 PP

>> SBP_bac_5  Bacterial extracellular solute-binding proteins, family 5 Middle
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0     4e-05      0.14     309     358 ..     250     297 ..     224     306 .. 0.87

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 4e-05
                 HHHHHHHHHHHHHHHTTEEEEEEEECHHHHHHHHHHCTTESEEEEEEECT CS
   SBP_bac_5 309 aekaiaeliqqqlkkiGikvevktvdwaatylervkdgdfdmillgwgad 358
                 + + + +++q++l+k  i ++v+ vdw +++l++ k++ +d+ ++ w + 
  KOO23508.1 250 VGTSVGQFYQKYLAK--ISLNVRKVDWVTEDLSYLKQQSYDALFTEWLDK 297
                 5678899*******7..999*******9999999*************876 PP

>> MGAT2  N-acetylglucosaminyltransferase II (MGAT2)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.0   0.0    0.0029        11      22      72 ..      23      74 ..      17      84 .. 0.74
   2 ?    3.4   0.0    0.0094        34     162     241 ..     136     211 ..     104     225 .. 0.70

  Alignments for each domain:
  == domain 1  score: 5.0 bits;  conditional E-value: 0.0029
       MGAT2 22 lakdelvivvqvhnrleylrlliesLekakgieeal.lvfshdvyseeinel 72
                l+++ + +vv  +nr++yl   ++s+++++   +++ + +s+d  +  ++++
  KOO23508.1 23 LSPEAIAVVVIAYNRPQYLDEALKSINASHPGGSSFpVYVSQDGENGPVTNV 74
                56788999******************98875444331556666666655555 PP

  == domain 2  score: 3.4 bits;  conditional E-value: 0.0094
       MGAT2 162 glvlflEedhyvapdflhvlklleklkkeecpecdvlsLgtyekkskykekskkveveawisskhnmgmalnrevwkkik 241
                 + v++lEed  v  df+ ++++++ l ++  p+   +s  + + ++++  + + ++ + +      +g  l+r++w++++
  KOO23508.1 136 AGVIILEEDIRVSTDFFAYFEAAAPLLESD-PTLLCVSAFNDNGQDAFPGDPRALHRSDFFP---GLGWLLSRRLWDELR 211
                 45789***************9998887776.3333333333333444666666666666666...566666666666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (389 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       374  (0.0208601); expected 358.6 (0.02)
Passed bias filter:                      357  (0.0199119); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.51u 0.25s 00:00:00.76 Elapsed: 00:00:00.43
# Mc/sec: 2713.36
//
Query:       KOO23509.1  [L=293]
Description: hypothetical protein Ctob_005608 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    7.7e-17   62.0   0.0    1.2e-16   61.3   0.0    1.4  1  2OG-FeII_Oxy_3  2OG-Fe(II) oxygenase superfamily
    1.6e-05   25.3   0.1    4.2e-05   24.0   0.1    1.8  2  2OG-FeII_Oxy    2OG-Fe(II) oxygenase superfamily


Domain annotation for each model (and alignments):
>> 2OG-FeII_Oxy_3  2OG-Fe(II) oxygenase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.3   0.0   1.4e-20   1.2e-16       1      96 []     123     222 ..     123     222 .. 0.85

  Alignments for each domain:
  == domain 1  score: 61.3 bits;  conditional E-value: 1.4e-20
                     -EEEEE-TT-EEEEE-SS--..--TT.-.EEEEEEEEE....ET-B--.....EEE..........---TT-EEEEE-..B-T..........EE CS
  2OG-FeII_Oxy_3   1 lqvlrygegqeykpHvDnfe..keegsgqrrltvllyLnekeseeGGe.....lelyekdkeavkikpkkgrlvlFesdellp..........He 78 
                     lqvlry+ gq+yk H+D+++  +++  g r++t++ yL+  e +eGGe     l        + +++pk g++++++s +  +          He
      KOO23509.1 123 LQVLRYEVGQFYKSHHDQNSpvDSPP-GPRVWTFFTYLS--EVDEGGEtyfpyL--------NLTVTPKTGSAIVWPSVRN-EnifedelrteHE 205
                     69***************999964454.99*********6..4599***666663........33669***********544.36*********** PP

                     E--B.-SS-EEEEEEEEE CS
  2OG-FeII_Oxy_3  79 vlpvtkggeRlsltgwir 96 
                     ++pv++ g ++++++w +
      KOO23509.1 206 AMPVRA-GVKYAANFWTH 222
                     ****65.6********87 PP

>> 2OG-FeII_Oxy  2OG-Fe(II) oxygenase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.0      0.96   8.6e+03      91     100 ..      83      92 ..      70      99 .. 0.81
   2 !   24.0   0.1   4.7e-09   4.2e-05       1     100 [.     120     222 ..     120     223 .. 0.84

  Alignments for each domain:
  == domain 1  score: -2.7 bits;  conditional E-value: 0.96
                   SEEEEEEEE- CS
  2OG-FeII_Oxy  91 rRvsiayfie 100
                   +R+s++ +++
    KOO23509.1  83 SRTSSTSWCN 92 
                   3888888885 PP

  == domain 2  score: 24.0 bits;  conditional E-value: 4.7e-09
                   S--EEEEEE.....E-S------..---EEEEEESSSEEEEEEE-TT---EEEETEEEE----TTEEEEEE-HHHHHHTTS.......-S----EEE CS
  2OG-FeII_Oxy   1 teellvlny.....ypphpdpev..ilglgahtdaslltillqddvgglevfkdgkwlrvppvdnslivniGdallflsng.......ryksvlHrV 83 
                   te+l+vl+y     y+ h d  +  ++   + +  +++t+l+  d gg+++         p  +++++++ G+a  +++            +++H++
    KOO23509.1 120 TEHLQVLRYevgqfYKSHHDQNSpvDS-PPGPRVWTFFTYLSEVDEGGETY--------FPYLNLTVTPKTGSA-IVWPSVrnenifeDELRTEHEA 206
                   689************999888875333.467899999************97........677889999999996.77777777788885566***** PP

                   ----GTGSEEEEEEEE- CS
  2OG-FeII_Oxy  84 lpvnegerRvsiayfie 100
                   +pv+ g  +++++++ +
    KOO23509.1 207 MPVRAGV-KYAANFWTH 222
                   ******9.*******97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (293 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       331  (0.0184617); expected 358.6 (0.02)
Passed bias filter:                      309  (0.0172346); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.44u 0.26s 00:00:00.70 Elapsed: 00:00:00.43
# Mc/sec: 2068.88
//
Query:       KOO23510.1  [L=280]
Description: hypothetical protein Ctob_005614 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.1e-33  116.7   0.0    1.3e-33  116.5   0.0    1.1  1  NAD_binding_10  NAD(P)H-binding
    0.00012   21.7   0.2      0.002   17.7   0.2    2.5  1  NmrA            NmrA-like family
      0.003   16.6   0.0     0.0061   15.6   0.0    1.5  1  3Beta_HSD       3-beta hydroxysteroid dehydrogenase/isomerase
  ------ inclusion threshold ------
      0.011   16.2   0.1      0.017   15.6   0.1    1.3  1  Semialdhyde_dh  Semialdehyde dehydrogenase, NAD binding domai
      0.016   14.7   0.0      0.029   13.8   0.0    1.4  1  Epimerase       NAD dependent epimerase/dehydratase family
      0.069   13.3   0.1       0.13   12.4   0.1    1.5  1  DapB_N          Dihydrodipicolinate reductase, N-terminus
       0.11   13.3   0.1       0.18   12.6   0.1    1.3  1  GFO_IDH_MocA    Oxidoreductase family, NAD-binding Rossmann f
       0.26   10.7   0.0       0.36   10.2   0.0    1.2  1  GDP_Man_Dehyd   GDP-mannose 4,6 dehydratase


Domain annotation for each model (and alignments):
>> NAD_binding_10  NAD(P)H-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  116.5   0.0   5.7e-37   1.3e-33       1     181 [.      18     234 ..      18     237 .. 0.81

  Alignments for each domain:
  == domain 1  score: 116.5 bits;  conditional E-value: 5.7e-37
                     TTTSHHHHHHHHHHHHC-T-EEEEEETTHHHCHHHHCT..TTCEEEE--TT-CCHHHHHHTT-SEEEES---TCC.....HHHH........... CS
  NAD_binding_10   1 GAtGkvGrllvkellargghevtalvRnpeklaeleae..eglevvegdvtdvedlaealkgadaVvsalggggk.....deeg........... 77 
                     GA G++G+++ ++lla+++++   +vR++++ a+l ++  +   vv++dvtd+++ a+a+ g++a ++ ++++       d ++           
      KOO23510.1  18 GAGGQTGQHAFRKLLANKDFAPIGIVRSEQSRAALIESgvPSEAVVVADVTDAAQFAAAIVGCEALIIGTSAKPApsgatDPTTgrpiftypkgt 112
                     9***************************8777767644357889*************************96666645544333367888888899 PP

                     ........HHHHHHHHHHCT.--EEEEEEETTTTSGCGCHHHHHHHHCC.......HHHHHHHHHHHHHHHHSSSEEEEEEE-CEE-ST--SEEE CS
  NAD_binding_10  78 ........aknivdaakeag.vkRfvlvsaigvgdevpgefgewnkell.......kaylaakraaeellrasgldwTivrpggLtdepttkyrv 156
                              k+ +daak+ g   +++++s++g +d   + ++ + +e l       +++l +kr+ae++l +sgl +Tiv+pggL +ep++k ++
      KOO23510.1 113 peivdwlgQKAQIDAAKACGpNTHVIICSSMGGTDP-SNMLNALGREKLpdgttkgGNILLWKRKAEKYLIDSGLPYTIVHPGGLLNEPGGKREI 206
                     99999999***********9679*********9974.34444444442212222337889*****************************887777 PP

                     E...ETTSS----EEEHHHHHHHHHHHC CS
  NAD_binding_10 157 v...ekgepfkggsisradVAdvlvavl 181
                     v   +++ +++++si+r+dVA+vlv++l
      KOO23510.1 207 VigvDDERTVGERSIPREDVAEVLVQAL 234
                     6554555566778*************98 PP

>> NmrA  NmrA-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.7   0.2   8.9e-07     0.002       1     105 [.      14     146 ..      14     198 .. 0.73

  Alignments for each domain:
  == domain 1  score: 17.7 bits;  conditional E-value: 8.9e-07
                 EEESSTTSHHHHHHHHHHHH.HT-EEEEEES-S-SHHHHHHHHSTTEEE.ES-TT-HHHHHHHHTT-SEEEE---GG...................... CS
        NmrA   1 IlviGaTGrqGksvvrallk.aghkvralvRdtkselakslkeaGvelv.kgdlddkeslvealkgvdvvfsvtgfy...................... 75 
                 ++v+Ga G+ G++  r ll+ +++    +vR ++s +a   +  + e v  +d+ d +  ++a+ g ++ ++ t+++                      
  KOO23510.1  14 VAVTGAGGQTGQHAFRKLLAnKDFAPIGIVRSEQSRAALIESGVPSEAVvVADVTDAAQFAAAIVGCEALIIGTSAKpapsgatdpttgrpiftypkgt 112
                 79***********9998887799************999888888888887***********************99878888888888888888888774 PP

                 ..S-HHHHHHHHHHHHHHHS.-SEE.EEEE---G CS
        NmrA  76 ..skeiedgkklvdAakeaG.vkhf.iySslgdd 105
                         +k+ +dAak+ G   h+ i Ss+g  
  KOO23510.1 113 peIVDWLGQKAQIDAAKACGpNTHViICSSMGGT 146
                 3333334588888888888885554145666544 PP

>> 3Beta_HSD  3-beta hydroxysteroid dehydrogenase/isomerase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.0   2.7e-06    0.0061       1      80 [.      15      93 ..      15     185 .. 0.65

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 2.7e-06
   3Beta_HSD  1 vvtGgaGFlGralvkeLvrleelkevrvlDlrespelleelskvnvkk..viegDvtdkdkleealegvdvvihlaslvdva 80
                +vtG++G  G++  ++L+  ++   + +   + s++ +  l +++v +  v+ +Dvtd+++  +a+ g +++i   s+ +  
  KOO23510.1 15 AVTGAGGQTGQHAFRKLLANKDFAPIGI---VRSEQSRAALIESGVPSeaVVVADVTDAAQFAAAIVGCEALIIGTSAKPAP 93
                69*****************998666665...55555556677777766669******************9999877766543 PP

>> Semialdhyde_dh  Semialdehyde dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.6   0.1   7.6e-06     0.017       1      64 [.      13      73 ..      13      94 .. 0.81

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 7.6e-06
                    EEEEETTTSHHHHHHHHHHHCTSSEEEEEEEESTTTTTSBHHHHSGGGTTTECEBEEE.GGGGGC CS
  Semialdhyde_dh  1 kvaivGatGyvGqellrlLeehpevelvvllsssrsaGkklaeavkaleegkdlkved.vdeeel 64
                    +va+ Ga G +Gq   r L  ++++  + ++ s++s    +++ v+     + ++v d +d++++
      KOO23510.1 13 RVAVTGAGGQTGQHAFRKLLANKDFAPIGIVRSEQSRAALIESGVP----SEAVVVADvTDAAQF 73
                    79*********************************99999999999....455555554445554 PP

>> Epimerase  NAD dependent epimerase/dehydratase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.0   1.3e-05     0.029       2      61 ..      15      78 ..      14      94 .. 0.83

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 1.3e-05
                EEETTTSHHHHHHHHHHHHCT.SEEEEEES-STTTTCHHCHHC...EEEE--TT-HHHHHHHHH CS
   Epimerase  2 lVtGatGfiGsalvkallekg.yevigldrlssasntarledl...elveldltdrsalerlfk 61
                 VtGa G+ G++  ++ll+++    ig+ r +++++   +  +    +v +d+td++++++++ 
  KOO23510.1 15 AVTGAGGQTGQHAFRKLLANKdFAPIGIVRSEQSRAALIESGVpseAVVVADVTDAAQFAAAIV 78
                7****************999966699999997777666666669999********999988775 PP

>> DapB_N  Dihydrodipicolinate reductase, N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.1   5.8e-05      0.13       2      63 ..      13      69 ..      12      85 .. 0.74

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 5.8e-05
                EEEEETTTSHHHHHHHHHHHHSTTEEEEEEEETTCSTTTTTBHHHHSSSS.--S-BEBSSHHH CS
      DapB_N  2 kvavvGasGrmGkevvkaveeaedlelvaavdrkeselegkdagellglg.klgvavtddlee 63
                +vav+Ga G  G++  + + +++d+   + v +++s++       l+++g +++  v +d+++
  KOO23510.1 13 RVAVTGAGGQTGQHAFRKLLANKDFAPIGIVRSEQSRAA------LIESGvPSEAVVVADVTD 69
                8***************************99999885433......333333444444444444 PP

>> GFO_IDH_MocA  Oxidoreductase family, NAD-binding Rossmann fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.1     8e-05      0.18       2      72 ..      13      89 ..      12     105 .. 0.85

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 8e-05
                  EEEEETTSHH.HHHHHHHHHHTTTTEEEEEEECSSHHHHHHH.....HHHTTHEEESSHHHHHTCT.TESEEEE-S-G CS
  GFO_IDH_MocA  2 rvaiiGaGki.gskhlrplnesqrleevvalldpdaeraeav.....aesfgveaysdleelladp.eidavivatpn 72
                  rva+ GaG   g++ +r+l ++ ++   ++++ ++++ra  +     +e+ +v+ ++d ++ +a    ++a+i++t +
    KOO23510.1 13 RVAVTGAGGQtGQHAFRKLLAN-KDFAPIGIVRSEQSRAALIesgvpSEAVVVADVTDAAQFAAAIvGCEALIIGTSA 89
                  89*****65559999*999999.8889999********9999999998889999999988888877789999999976 PP

>> GDP_Man_Dehyd  GDP-mannose 4,6 dehydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.0   0.00016      0.36       2      68 ..      16      74 ..      15      82 .. 0.70

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.00016
                   EETTTSHHHHHHHHHHH.HCT-CCEEEEEEESS-TTHHHHHCTTT...TTGCCEEEEE--TT-HHHHH CS
  GDP_Man_Dehyd  2 iTGiaGfiGsylaelLl.ekgyevhgivrrsssfntgriehlakdpkeeleenlklhkgDltDsssle 68
                   +TG  G+ G++  ++Ll +k++  +givr ++s +++ ie+    p+        ++ +D+tD+++  
     KOO23510.1 16 VTGAGGQTGQHAFRKLLaNKDFAPIGIVRSEQS-RAALIESGV--PS------EAVVVADVTDAAQFA 74
                   9**********9988872567889999887766.556666533..32......246777777776665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (280 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       272  (0.015171); expected 358.6 (0.02)
Passed bias filter:                      246  (0.0137208); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.48u 0.28s 00:00:00.76 Elapsed: 00:00:00.46
# Mc/sec: 1837.25
//
Query:       KOO23511.1  [L=348]
Description: hypothetical protein Ctob_005615 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    5.4e-08   32.6   0.4    1.1e-07   31.6   0.4    1.5  1  UBA          UBA/TS-N domain
  ------ inclusion threshold ------
      0.016   14.9   0.0      0.028   14.1   0.0    1.4  1  CUE          CUE domain
      0.016   15.1   1.6      0.037   14.0   1.6    1.6  1  zf-RING_5    zinc-RING finger domain
      0.018   14.7   0.8      0.036   13.8   0.8    1.5  1  zf-RING_11   RING-like zinc finger
      0.056   13.4   3.7       0.23   11.5   3.7    2.2  1  UIM          Ubiquitin interaction motif
      0.066   13.3   0.3       0.14   12.2   0.3    1.5  1  zf-C3H2C3    Zinc-finger
      0.094   12.9   0.0       0.22   11.7   0.0    1.6  1  UBA_5        UBA domain
       0.19   12.1   5.1          1    9.7   5.3    2.0  2  zf-RING_2    Ring finger domain
       0.27   11.1   1.7       0.75    9.7   1.7    1.8  1  zf-C3HC4_2   Zinc finger, C3HC4 type (RING finger)
        0.7    9.8   3.1       0.41   10.6   0.8    1.8  2  zf-C3HC4     Zinc finger, C3HC4 type (RING finger)
        5.5    7.0   7.0         37    4.3   3.8    2.4  2  Prok-RING_1  Prokaryotic RING finger family 1


Domain annotation for each model (and alignments):
>> UBA  UBA/TS-N domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.6   0.4   6.9e-11   1.1e-07       3      34 ..     257     288 ..     256     291 .. 0.94

  Alignments for each domain:
  == domain 1  score: 31.6 bits;  conditional E-value: 6.9e-11
                 HHHHHHHHHTTS-HHHHHHHHHHTTTSHHHHH CS
         UBA   3 eeaiqrLveMGFdreevveALratgnNeErAv 34 
                  e+ +++ +MGF r  ++ ALrat++N+++A+
  KOO23511.1 257 TEQMAQMASMGFGRRGCLAALRATDGNVDAAI 288
                 6999***************************8 PP

>> CUE  CUE domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   0.0   1.7e-05     0.028      22      41 ..     275     294 ..     274     295 .. 0.93

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 1.7e-05
                 HHHHHCTTTHHHHHHHHHHC CS
         CUE  22 avLrasngnvEatinaLLeg 41 
                 a+Lra++gnv+a+i + L++
  KOO23511.1 275 AALRATDGNVDAAIAIVLNM 294
                 68****************98 PP

>> zf-RING_5  zinc-RING finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   1.6   2.3e-05     0.037       2      43 ..      40      99 ..      39     100 .. 0.84

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 2.3e-05
   zf-RING_5  2 CnkCfekl..skeekfyltsCgHifCekClkkll................ekeavCpiCr 43
                C +C   +  +  ++++++sCgH+++ +C   +                    ++C +Cr
  KOO23511.1 40 CFVCVGTTegKAAKEVITLSCGHSVHAACWVPCVlptlgedsaqaryvedRLGRKCGFCR 99
                777777775555555**************9999999999999999999999999999998 PP

>> zf-RING_11  RING-like zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.8   2.2e-05     0.036       1      28 [.      39      68 ..      39      69 .. 0.88

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 2.2e-05
  zf-RING_11  1 eCsICLeefk..pgqalfilpCsHtFHfkC 28
                +C +C  + +    +++++l+C+H  H  C
  KOO23511.1 39 QCFVCVGTTEgkAAKEVITLSCGHSVHAAC 68
                7*******995445699***********99 PP

>> UIM  Ubiquitin interaction motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   3.7   0.00014      0.23       1      14 [.     313     326 ..     313     328 .. 0.93

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.00014
         UIM   1 dEdedLqrAlalSl 14 
                 +++++Lq+AlalS+
  KOO23511.1 313 EDEAELQAALALSM 326
                 69***********9 PP

>> zf-C3H2C3  Zinc-finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.3   8.7e-05      0.14      12      30 ..      55      73 ..      48      77 .. 0.79

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 8.7e-05
   zf-C3H2C3 12 fvaysCkHlvHakCadeev 30
                +   sC H+vHa C  + v
  KOO23511.1 55 VITLSCGHSVHAACWVPCV 73
                56779*********66655 PP

>> UBA_5  UBA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   0.00013      0.22       9      38 ..     249     277 ..     240     298 .. 0.72

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.00013
       UBA_5   9 PqeadPrlveslaqmlsmGfsdeGGWltrl 38 
                 P+   P   e +aqm smGf   G  l+ l
  KOO23511.1 249 PPPPLPHYTEQMAQMASMGFGRRGC-LAAL 277
                 455669999***********98764.4444 PP

>> zf-RING_2  Ring finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   5.3   0.00064         1       2      30 ..      39      69 ..      38      99 .. 0.69
   2 ?   -0.3   0.1      0.84   1.4e+03       2      12 ..      94     104 ..      93     107 .. 0.77

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 0.00064
   zf-RING_2  2 eCpICleel..ssadsvlllpCgHvfhreCl 30
                +C +C      + a++v++l CgH+ h  C 
  KOO23511.1 39 QCFVCVGTTegKAAKEVITLSCGHSVHAACW 69
                799**7444337778899999********96 PP

  == domain 2  score: -0.3 bits;  conditional E-value: 0.84
   zf-RING_2   2 eCpICleelss 12 
                 +C+ C  e+s+
  KOO23511.1  94 KCGFCRTEFSE 104
                 79999888865 PP

>> zf-C3HC4_2  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   1.7   0.00046      0.75       1      29 [.      39      71 ..      39      78 .. 0.69

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 0.00046
  zf-C3HC4_2  1 kCpiCldmlk....dpsvvtpCgHvfCqkCilr 29
                +C +C+   +    + + +  CgH+ ++ C+ +
  KOO23511.1 39 QCFVCVGTTEgkaaKEVITLSCGHSVHAACWVP 71
                688888766521112244559*********976 PP

>> zf-C3HC4  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.8   0.00025      0.41       1      30 [.      40      73 ..      40      81 .. 0.87
   2 ?   -2.4   0.1       2.9   4.7e+03       1      10 [.      95     104 ..      93     107 .. 0.72

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00025
                -TTT-S--SS-E.....E-TTS--B-CHHHHHHH CS
    zf-C3HC4  1 CpiCleeakepn....elleCkHsfCskCirkil 30
                C +C  + + +      +l C+Hs++ +C + ++
  KOO23511.1 40 CFVCVGTTEGKAakevITLSCGHSVHAACWVPCV 73
                88898888888888889************88765 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 2.9
                 -TTT-S--SS CS
    zf-C3HC4   1 CpiCleeake 10 
                 C  C +e++e
  KOO23511.1  95 CGFCRTEFSE 104
                 7778777766 PP

>> Prok-RING_1  Prokaryotic RING finger family 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.3   3.8     0.023        37       6      35 ..      39      69 ..      35      73 .. 0.80
   2 ?    3.2   0.1     0.053        86       4      17 ..      92     105 ..      89     108 .. 0.87

  Alignments for each domain:
  == domain 1  score: 4.3 bits;  conditional E-value: 0.023
  Prok-RING_1  6 kCpvCgkelkee.dDiVvCpeCgtpyHraCy 35
                 +C vC  + + +    V+   Cg + H aC+
   KOO23511.1 39 QCFVCVGTTEGKaAKEVITLSCGHSVHAACW 69
                 68999777765535668999*********** PP

  == domain 2  score: 3.2 bits;  conditional E-value: 0.053
  Prok-RING_1   4 gkkCpvCgkelkee 17 
                  g kC  C+ e++ee
   KOO23511.1  92 GRKCGFCRTEFSEE 105
                  78*********986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (348 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       366  (0.0204139); expected 358.6 (0.02)
Passed bias filter:                      302  (0.0168442); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.47u 0.22s 00:00:00.69 Elapsed: 00:00:00.41
# Mc/sec: 2552.10
//
Query:       KOO23512.1  [L=491]
Description: pepsinogen c [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.8e-24   86.8   0.0    5.8e-24   85.1   0.0    1.7  1  Asp       Eukaryotic aspartyl protease
    4.4e-05   23.8   0.1      0.082   13.1   0.0    2.5  2  TAXi_N    Xylanase inhibitor N-terminal


Domain annotation for each model (and alignments):
>> Asp  Eukaryotic aspartyl protease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   85.1   0.0   6.4e-28   5.8e-24       4     314 ..      25     348 ..      22     349 .. 0.80

  Alignments for each domain:
  == domain 1  score: 85.1 bits;  conditional E-value: 6.4e-28
                 EEEEETTT..TEEEEEEEETT--SEEEEBTTESTSHCHHTSS-B-GGG-TT-E..EEEEEEEEECTTSEEEEEEEEEEEEETTEEEEEE........EE CS
                 xxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx........xx RF
         Asp   4 geisiGtp..eqkftvifDTGSsdlWVpsskckkssackshstydpskSstyk..kngkslsisYGdgsvsGflsqdtvkvggltvknq........ef 90 
                 +   iGt+  +q + +++DTGS  l   s++c+ + ac +h+ +d++ Sst+   + ++++ ++YG+g+++   + d+v++ gl             ++
  KOO23512.1  25 TFAAIGTSsvPQPLALVVDTGSYVLVAASTYCT-QRACLNHRRFDSNMSSTFVeeAPNNAFLLRYGQGNITVHDASDQVAFLGLERATTpihesklvDI 122
                 55566665338**************999****9.89***************98334578899********************99855540000111144 PP

                 EEEEEESSHHHTTSSSSEEEE-S-GGGSCGGSCCHHHHHHHTTSSSSSEEEEEE-STTSSEEEEEESSEEGGGE.EEEEEEEEESS..TSSTEEEEEEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxx..xxxxxxxxxxx RF
         Asp  91 geatkepgstflaakfdGiLGlgfkeisveeatpvfdnlvsqglikepvfsvylnreeeeggeivfGgvDesky.kGsltyvpvts..kgywqielesv 186
                 g+ + ++   f +a+ dGi+Glg ++ +  + + + +++        + f++ l  + e  g  + G ++ + +      yv +++  k +w + l++v
  KOO23512.1 123 GLMSDQTLRGFSDAPYDGIMGLGKRKTTELNHQAFLEDME------IEGFTLCLG-DPELHGDGIGGRLEMQSMlDVGNPYVTLSTigKYVWGAMLDHV 214
                 555666667788999********66666555555555554......456*****9.77888888999998765415556677777776888******** PP

                 EETTEEE....EEEEEEEEEEETTCSSEEEEHHHHHHHHHHHTTEEEET......TCEEEEETTGGGGSEEEEEEETTEEEEEEGGGGEEEESSSTTSE CS
                 xxxxxxx....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx......xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
         Asp 187 tvggktv....lcssgcqailDtGTsllalptsivekiakaigakkses......egeyvvdCdslsslpdisftiggakitvpvselvlkeeeseesq 275
                 +v g+      +  s+c+ i+D+GT+ll +p+ +v+++   i+    es      +++ + +  ++ +lp++++ +gg+ +t+p++ ++ + e +    
  KOO23512.1 215 SVPGQPPlahcSALSECASIIDSGTTLLLFPEPVVDSLYYTIEDGCAESdclltlQNQTTCSGPHFDGLPQLELRVGGQMLTLPPRVYMGEMEVDVP-- 311
                 ***9987675556689*************************998777777888766666667777***********************988887554.. PP

                 EEESEEECCTSSSEEEEHHHHTTEEEEEETTTTEEEEEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
         Asp 276 CilglvseeegdlwiLGdvFlrsayvvfdldnnrvglAe 314
                  +  +  + ++  +iLG  Flr++ v+f++++  +++Ae
  KOO23512.1 312 TTKEI--KVGNTEVILGMPFLRHYSVYFNRTTWDMSVAE 348
                 34444..669999*****************999999887 PP

>> TAXi_N  Xylanase inhibitor N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.1   0.0   9.1e-06     0.082       1      52 [.      23      76 ..      23      82 .. 0.86
   2 !    7.9   0.0   0.00037       3.3     117     164 ..     121     171 ..      84     181 .. 0.68

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 9.1e-06
      TAXi_N  1 YlvsisiGtp..pqplklvvDtGsdltWvqCkpckacssqkkpvfdpsksstyk 52
                Y++   iGt   pqpl lvvDtGs ++    + c++++  +++ fd + sst+ 
  KOO23512.1 23 YTTFAAIGTSsvPQPLALVVDTGSYVLVAASTYCTQRACLNHRRFDSNMSSTFV 76
                6666777777669999*******************9999999999999999985 PP

  == domain 2  score: 7.9 bits;  conditional E-value: 0.00037
      TAXi_N 117 vfGCgk.snlgglaa.gadGilGLGrgk.lSlvsqlaskgslgnkFsyCLs 164
                  +G  + ++l+g+ +   dGi+GLG+ k   l  q+  ++   + F++CL 
  KOO23512.1 121 DIGLMSdQTLRGFSDaPYDGIMGLGKRKtTELNHQAFLEDMEIEGFTLCLG 171
                 455544444455544279*******86626688888888788889999993 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (491 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       412  (0.0229795); expected 358.6 (0.02)
Passed bias filter:                      358  (0.0199677); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.49u 0.25s 00:00:00.74 Elapsed: 00:00:00.40
# Mc/sec: 3651.00
//
Query:       KOO23513.1  [L=348]
Description: hypothetical protein Ctob_005617 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    8.1e-34  112.7   0.7     0.0002   20.7   0.0    6.2  6  EF-hand_1       EF hand
    8.8e-34  113.5   3.8    3.2e-05   23.2   0.0    6.2  6  EF-hand_5       EF hand
    1.6e-31  105.5   0.3     0.0014   18.4   0.0    6.4  6  EF-hand_6       EF-hand domain
    1.8e-24   86.0   0.1    7.9e-07   29.4   0.0    3.9  4  EF-hand_7       EF-hand domain pair
    1.3e-17   63.4   4.5     0.0034   17.2   0.1    6.3  6  EF-hand_8       EF-hand domain pair
    4.1e-11   43.2   0.0     0.0053   17.1   0.0    3.6  3  SPARC_Ca_bdg    Secreted protein acidic and rich in cysteine 
     0.0011   19.1   0.3        8.8    6.6   0.0    3.2  3  Toprim          Toprim domain
     0.0018   18.4   6.0        1.8    8.8   0.7    4.6  5  Dockerin_1      Dockerin type I domain
     0.0057   17.0   1.7       0.63   10.4   0.1    3.4  3  TPR_20          Tetratricopeptide repeat
  ------ inclusion threshold ------
      0.011   16.1   0.1         13    6.2   0.0    3.9  5  EF-hand_14      EF-hand domain
      0.031   14.6   0.8        6.7    7.1   0.0    3.7  4  EF-hand_9       EF-hand domain
      0.035   13.9   0.0         19    5.2   0.0    4.0  5  EF-hand_13      EF-hand domain
        0.1   13.1   0.0        4.5    7.8   0.0    2.6  2  OAM_dimer       Dimerisation domain of d-ornithine 4,5-aminom
       0.14   12.4   0.0       0.34   11.1   0.0    1.6  1  Arm-DNA-bind_1  Bacteriophage lambda integrase, Arm DNA-bindi


Domain annotation for each model (and alignments):
>> EF-hand_1  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5   0.0   1.6e-06    0.0021       3      28 ..      70      95 ..      68      96 .. 0.90
   2 !   17.8   0.1   1.3e-06    0.0017       3      26 ..     104     127 ..     102     130 .. 0.92
   3 !   17.9   0.0   1.2e-06    0.0015       2      27 ..     153     178 ..     152     180 .. 0.88
   4 !   17.5   0.0   1.7e-06    0.0021       3      26 ..     188     211 ..     186     214 .. 0.91
   5 !   14.3   0.0   1.7e-05     0.022       1      27 [.     229     255 ..     229     257 .. 0.89
   6 !   20.7   0.0   1.6e-07    0.0002       5      25 ..     267     287 ..     264     291 .. 0.90

  Alignments for each domain:
  == domain 1  score: 17.5 bits;  conditional E-value: 1.6e-06
                HHHHHHHTTTSSSEEEHHHHHHHHHH CS
   EF-hand_1  3 keiFrefDkDgdGkIdfeEfkellkk 28
                + +F+ +D++ dG I+  E+++ l++
  KOO23513.1 70 DAMFDAIDTNADGVISVVELRTHLSS 95
                78******************998765 PP

  == domain 2  score: 17.8 bits;  conditional E-value: 1.3e-06
                 HHHHHHHTTTSSSEEEHHHHHHHH CS
   EF-hand_1   3 keiFrefDkDgdGkIdfeEfkell 26 
                 +++F+++D D +G  ++eE+++++
  KOO23513.1 104 DKLFELIDADENGECSREELRNAF 127
                 89*******************998 PP

  == domain 3  score: 17.9 bits;  conditional E-value: 1.2e-06
                 HHHHHHHHTTTSSSEEEHHHHHHHHH CS
   EF-hand_1   2 lkeiFrefDkDgdGkIdfeEfkellk 27 
                  + +F+ +D +gdG ++ +E+++ ++
  KOO23513.1 153 ADAFFDAVDSNGDGAVSPQEMRKHVS 178
                 6899*****************98765 PP

  == domain 4  score: 17.5 bits;  conditional E-value: 1.7e-06
                 HHHHHHHTTTSSSEEEHHHHHHHH CS
   EF-hand_1   3 keiFrefDkDgdGkIdfeEfkell 26 
                 +++F+++D D++G ++++E +e++
  KOO23513.1 188 ERFFALLDADKSGEVSRNEVREAF 211
                 689******************997 PP

  == domain 5  score: 14.3 bits;  conditional E-value: 1.7e-05
                 HHHHHHHHHTTTSSSEEEHHHHHHHHH CS
   EF-hand_1   1 elkeiFrefDkDgdGkIdfeEfkellk 27 
                 e + iF  +D +gdG ++  E+  +l+
  KOO23513.1 229 EADTIFVAIDANGDGNVEQAELALYLS 255
                 5789******************98876 PP

  == domain 6  score: 20.7 bits;  conditional E-value: 1.6e-07
                 HHHHHTTTSSSEEEHHHHHHH CS
   EF-hand_1   5 iFrefDkDgdGkIdfeEfkel 25 
                 iF+ +D++gdG I++eE+++ 
  KOO23513.1 267 IFATLDVNGDGLISREELRNG 287
                 9*****************975 PP

>> EF-hand_5  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.2   0.0   1.1e-07   0.00014       3      23 ..      71      91 ..      70      94 .. 0.90
   2 !   13.7   0.1   2.5e-05     0.032       2      24 ..     104     127 ..     103     128 .. 0.89
   3 !   23.2   0.0   2.5e-08   3.2e-05       3      23 ..     155     175 ..     153     178 .. 0.89
   4 !   13.0   0.0   4.3e-05     0.055       4      23 ..     190     209 ..     187     212 .. 0.86
   5 !   14.9   0.0   1.1e-05     0.014       4      21 ..     233     250 ..     230     255 .. 0.87
   6 !   23.0   0.0   2.8e-08   3.6e-05       5      23 ..     268     286 ..     265     288 .. 0.90

  Alignments for each domain:
  == domain 1  score: 21.2 bits;  conditional E-value: 1.1e-07
                HHHHHH-SS-SSCE-HHHHHH CS
   EF-hand_5  3 dtFqaiDlNgDGkIskeELkt 23
                ++F+aiD+N DG Is+ EL+t
  KOO23513.1 71 AMFDAIDTNADGVISVVELRT 91
                69*****************98 PP

  == domain 2  score: 13.7 bits;  conditional E-value: 2.5e-05
                 HHHHHHH-SS-SSCE-HHHHHH.H CS
   EF-hand_5   2 kdtFqaiDlNgDGkIskeELkt.l 24 
                 +++F+ iD++  G  s+eEL++ +
  KOO23513.1 104 DKLFELIDADENGECSREELRNaF 127
                 469*****************9866 PP

  == domain 3  score: 23.2 bits;  conditional E-value: 2.5e-08
                 HHHHHH-SS-SSCE-HHHHHH CS
   EF-hand_5   3 dtFqaiDlNgDGkIskeELkt 23 
                 ++F+a+D NgDG +s++E ++
  KOO23513.1 155 AFFDAVDSNGDGAVSPQEMRK 175
                 69****************987 PP

  == domain 4  score: 13.0 bits;  conditional E-value: 4.3e-05
                 HHHHH-SS-SSCE-HHHHHH CS
   EF-hand_5   4 tFqaiDlNgDGkIskeELkt 23 
                 +F  +D++++G +s+ E ++
  KOO23513.1 190 FFALLDADKSGEVSRNEVRE 209
                 7999*************876 PP

  == domain 5  score: 14.9 bits;  conditional E-value: 1.1e-05
                 HHHHH-SS-SSCE-HHHH CS
   EF-hand_5   4 tFqaiDlNgDGkIskeEL 21 
                  F aiD+NgDG +   EL
  KOO23513.1 233 IFVAIDANGDGNVEQAEL 250
                 799***********9999 PP

  == domain 6  score: 23.0 bits;  conditional E-value: 2.8e-08
                 HHHH-SS-SSCE-HHHHHH CS
   EF-hand_5   5 FqaiDlNgDGkIskeELkt 23 
                 F  +D+NgDG Is+eEL++
  KOO23513.1 268 FATLDVNGDGLISREELRN 286
                 889**************85 PP

>> EF-hand_6  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.2   0.0   1.3e-06    0.0017       4      30 ..      71      96 ..      68      97 .. 0.90
   2 !   15.0   0.0   1.4e-05     0.018       3      26 ..     104     127 ..     102     132 .. 0.92
   3 !   17.0   0.0   3.2e-06    0.0041       3      29 ..     154     179 ..     152     181 .. 0.88
   4 !   18.4   0.0   1.1e-06    0.0014       3      26 ..     188     211 ..     186     223 .. 0.90
   5 !   10.8   0.0    0.0003      0.38       3      27 ..     231     255 ..     229     260 .. 0.87
   6 !   17.9   0.0   1.5e-06     0.002       5      26 ..     267     288 ..     264     300 .. 0.89

  Alignments for each domain:
  == domain 1  score: 18.2 bits;  conditional E-value: 1.3e-06
   EF-hand_6  4 eaFklfDkdgdGkidaeElrkalrkal 30
                + F+++D++ dG i+  Elr +l+ + 
  KOO23513.1 71 AMFDAIDTNADGVISVVELRTHLS-SI 96
                68********************99.66 PP

  == domain 2  score: 15.0 bits;  conditional E-value: 1.4e-05
   EF-hand_6   3 reaFklfDkdgdGkidaeElrkal 26 
                 +++F+l+D d +G+ ++eElr+a+
  KOO23513.1 104 DKLFELIDADENGECSREELRNAF 127
                 589******************997 PP

  == domain 3  score: 17.0 bits;  conditional E-value: 3.2e-06
   EF-hand_6   3 reaFklfDkdgdGkidaeElrkalrka 29 
                 +++F++ D +gdG ++++E+rk+ + +
  KOO23513.1 154 DAFFDAVDSNGDGAVSPQEMRKHVS-S 179
                 679******************9987.5 PP

  == domain 4  score: 18.4 bits;  conditional E-value: 1.1e-06
   EF-hand_6   3 reaFklfDkdgdGkidaeElrkal 26 
                 +++F l+D d++G+++++E+r a+
  KOO23513.1 188 ERFFALLDADKSGEVSRNEVREAF 211
                 689*****************9876 PP

  == domain 5  score: 10.8 bits;  conditional E-value: 0.0003
   EF-hand_6   3 reaFklfDkdgdGkidaeElrkalr 27 
                 + +F ++D +gdG + ++El   l+
  KOO23513.1 231 DTIFVAIDANGDGNVEQAELALYLS 255
                 56899***************99887 PP

  == domain 6  score: 17.9 bits;  conditional E-value: 1.5e-06
   EF-hand_6   5 aFklfDkdgdGkidaeElrkal 26 
                 +F  +D++gdG i++eElr+ +
  KOO23513.1 267 IFATLDVNGDGLISREELRNGY 288
                 8*****************9865 PP

>> EF-hand_7  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.9   0.0   0.00037      0.47      47      68 ..      70      91 ..      59      94 .. 0.83
   2 !   23.4   0.1   4.9e-08   6.2e-05       7      70 ..      72     127 ..      68     128 .. 0.87
   3 !   29.4   0.0   6.1e-10   7.9e-07       7      70 ..     156     211 ..     135     212 .. 0.90
   4 !   28.5   0.0   1.2e-09   1.5e-06       5      70 ..     231     288 ..     227     289 .. 0.85

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00037
   EF-hand_7 47 ellfkefDtdkdGvisfdEFlk 68
                +++f+ +Dt+ dGvis  E+++
  KOO23513.1 70 DAMFDAIDTNADGVISVVELRT 91
                6899999******999988875 PP

  == domain 2  score: 23.4 bits;  conditional E-value: 4.9e-08
   EF-hand_7   7 aFkelDtdgdgyldkeellrllrkifqgagegsklsdeelellfkefDtdkdGvisfdEFlkly 70 
                 +F+++Dt+ dg +++ el+  + +     + g    +e+ ++lf+ +D d +G+ s++E+++++
  KOO23513.1  72 MFDAIDTNADGVISVVELR-THLS-----SIGYA--EEAADKLFELIDADENGECSREELRNAF 127
                 6****************99.5554.....66666..67899******************99876 PP

  == domain 3  score: 29.4 bits;  conditional E-value: 6.1e-10
   EF-hand_7   7 aFkelDtdgdgyldkeellrllrkifqgagegsklsdeelellfkefDtdkdGvisfdEFlkly 70 
                  F++ D++gdg ++++e+++ +       + g ++   + e++f  +D dk+G++s++E ++++
  KOO23513.1 156 FFDAVDSNGDGAVSPQEMRKHVS------SIGYEP--AAAERFFALLDADKSGEVSRNEVREAF 211
                 49***************996666......899994..4688******************99986 PP

  == domain 4  score: 28.5 bits;  conditional E-value: 1.2e-09
   EF-hand_7   5 keaFkelDtdgdgyldkeellrllrkifqgagegsklsdeelellfkefDtdkdGvisfdEFlkly 70 
                  ++F ++D +gdg ++++el  l+ +     + g     e+  ++f  +D ++dG is++E+++ y
  KOO23513.1 231 DTIFVAIDANGDGNVEQAELA-LYLS-----RKGYA--AEAAATIFATLDVNGDGLISREELRNGY 288
                 6789*****************.7773.....55555..56899******************98765 PP

>> EF-hand_8  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.8   0.2   6.2e-05      0.08      27      45 ..      68      86 ..      67      89 .. 0.90
   2 !   17.2   0.1   2.6e-06    0.0034       2      52 ..      81     127 ..      80     129 .. 0.88
   3 !    7.0   0.1    0.0042       5.3      28      44 ..     153     169 ..     150     175 .. 0.87
   4 !   10.5   0.0   0.00033      0.43       2      54 ..     165     213 ..     164     214 .. 0.87
   5 !   12.4   0.0   8.3e-05      0.11      22      48 ..     224     250 ..     216     257 .. 0.84
   6 !   11.7   0.0   0.00014      0.17      22      52 ..     258     288 ..     251     291 .. 0.83

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 6.2e-05
   EF-hand_8 27 evdilfrefDtdgdGkisf 45
                e d++f+++Dt+ dG+is 
  KOO23513.1 68 ESDAMFDAIDTNADGVISV 86
                789**************96 PP

  == domain 2  score: 17.2 bits;  conditional E-value: 2.6e-06
   EF-hand_8   2 kgkItreelrrilrilglkkglseeevdilfrefDtdgdGkisfeEFcvll 52 
                 +g+I++ elr+ l+++g    + ee++d lf ++D d++G  s eE  + +
  KOO23513.1  81 DGVISVVELRTHLSSIG----YAEEAADKLFELIDADENGECSREELRNAF 127
                 8**********776666....88*****************99999988776 PP

  == domain 3  score: 7.0 bits;  conditional E-value: 0.0042
   EF-hand_8  28 vdilfrefDtdgdGkis 44 
                 +d+ f+++D +gdG++s
  KOO23513.1 153 ADAFFDAVDSNGDGAVS 169
                 7888***********98 PP

  == domain 4  score: 10.5 bits;  conditional E-value: 0.00033
   EF-hand_8   2 kgkItreelrrilrilglkkglseeevdilfrefDtdgdGkisfeEFcvller 54 
                 +g ++++e+r+ ++++g    + + +++  f ++D d++G +s +E  + + r
  KOO23513.1 165 DGAVSPQEMRKHVSSIG----YEPAAAERFFALLDADKSGEVSRNEVREAFLR 213
                 7999*******776666....88***********************9888766 PP

  == domain 5  score: 12.4 bits;  conditional E-value: 8.3e-05
   EF-hand_8  22 glseeevdilfrefDtdgdGkisfeEF 48 
                 gl+ +e+d++f ++D +gdG + + E 
  KOO23513.1 224 GLGTSEADTIFVAIDANGDGNVEQAEL 250
                 3999******************99996 PP

  == domain 6  score: 11.7 bits;  conditional E-value: 0.00014
   EF-hand_8  22 glseeevdilfrefDtdgdGkisfeEFcvll 52 
                 g+ +e++ ++f ++D +gdG is eE  + +
  KOO23513.1 258 GYAAEAAATIFATLDVNGDGLISREELRNGY 288
                 47789999******************87755 PP

>> SPARC_Ca_bdg  Secreted protein acidic and rich in cysteine Ca binding region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   0.0   4.1e-06    0.0053      53     110 ..      66     123 ..      48     126 .. 0.87
   2 !   12.8   0.0   8.7e-05      0.11      59     109 ..     156     206 ..     129     209 .. 0.85
   3 !    8.8   0.0    0.0016         2      60     110 ..     234     284 ..     226     287 .. 0.76

  Alignments for each domain:
  == domain 1  score: 17.1 bits;  conditional E-value: 4.1e-06
  SPARC_Ca_bdg  53 kepvawkFsklDtnsdkvlsksELaplraplvklehCikpflescDadkdkkislkEw 110
                   + +   +F+ +Dtn d+v+s  EL+   +++   e+  ++++e  Dad++++ s++E 
    KOO23513.1  66 HVESDAMFDAIDTNADGVISVVELRTHLSSIGYAEEAADKLFELIDADENGECSREEL 123
                   5555679******************99999************************9995 PP

  == domain 2  score: 12.8 bits;  conditional E-value: 8.7e-05
  SPARC_Ca_bdg  59 kFsklDtnsdkvlsksELaplraplvklehCikpflescDadkdkkislkE 109
                    F+ +D n d+ +s +E+++  +++       ++f+   Dadk +++s++E
    KOO23513.1 156 FFDAVDSNGDGAVSPQEMRKHVSSIGYEPAAAERFFALLDADKSGEVSRNE 206
                   599***************998887776677889***************999 PP

  == domain 3  score: 8.8 bits;  conditional E-value: 0.0016
  SPARC_Ca_bdg  60 FsklDtnsdkvlsksELaplraplvklehCikpflescDadkdkkislkEw 110
                   F  +D n d+ ++++ELa   +      +  ++ + + D++ d+ is++E 
    KOO23513.1 234 FVAIDANGDGNVEQAELALYLSRKGYAAEAAATIFATLDVNGDGLISREEL 284
                   778888999999999988765555566667778888889999998888884 PP

>> Toprim  Toprim domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.6   0.0    0.0069       8.8      52      88 ..      92     128 ..      65     149 .. 0.78
   2 ?    6.0   0.0     0.011        14      47      92 ..     171     216 ..     135     225 .. 0.81
   3 ?    3.1   0.1     0.087   1.1e+02      61      92 ..     228     255 ..     219     266 .. 0.76

  Alignments for each domain:
  == domain 1  score: 6.6 bits;  conditional E-value: 0.0069
                 HHHHHHHHHHHHSEEEEECSSSHHHHHHHHHHHHHHT CS
      Toprim  52 vlkalkelakradeiilatDpDreGeaiawellevlk 88 
                 +l+++    + ad+++ ++D+D+ Ge  + el++++ 
  KOO23513.1  92 HLSSIGYAEEAADKLFELIDADENGECSREELRNAFV 128
                 455566666889***************9999998775 PP

  == domain 2  score: 6.0 bits;  conditional E-value: 0.011
                 TTTHHHHHHHHHHHHHHSEEEEECSSSHHHHHHHHHHHHHHTHHHT CS
      Toprim  47 edkkkvlkalkelakradeiilatDpDreGeaiawellevlkelle 92 
                 ++ +k+++++  +   a++ + ++D+D+ Ge  + e++e++ ++ +
  KOO23513.1 171 QEMRKHVSSIGYEPAAAERFFALLDADKSGEVSRNEVREAFLRYED 216
                 556777788888888899999*****************99986665 PP

  == domain 3  score: 3.1 bits;  conditional E-value: 0.087
                 HHHSEEEEECSSSHHHHHHHHHHHHHHTHHHT CS
      Toprim  61 kradeiilatDpDreGeaiawellevlkelle 92 
                 ++ad i++a+D+  +G   + el+     +l+
  KOO23513.1 228 SEADTIFVAIDANGDGNVEQAELAL----YLS 255
                 789*************988888773....333 PP

>> Dockerin_1  Dockerin type I domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.6   0.1      0.12   1.6e+02      32      46 ..      71      85 ..      56      90 .. 0.78
   2 ?    4.0   0.0     0.045        58      32      46 ..     155     169 ..     137     174 .. 0.75
   3 ?   -3.3   0.0       8.7   1.1e+04      37      46 ..     194     203 ..     185     205 .. 0.71
   4 ?    5.3   0.1     0.018        23      36      51 ..     236     251 ..     225     257 .. 0.79
   5 !    8.8   0.7    0.0014       1.8       3      46 ..     238     280 ..     236     284 .. 0.76

  Alignments for each domain:
  == domain 1  score: 2.6 bits;  conditional E-value: 0.12
                CCHGGGSTT-SSCES CS
  Dockerin_1 32 sngkaaDvNgDGrvn 46
                 + +a D N DG ++
  KOO23513.1 71 AMFDAIDTNADGVIS 85
                566788889999887 PP

  == domain 2  score: 4.0 bits;  conditional E-value: 0.045
                 CCHGGGSTT-SSCES CS
  Dockerin_1  32 sngkaaDvNgDGrvn 46 
                    +a D NgDG v+
  KOO23513.1 155 AFFDAVDSNGDGAVS 169
                 556778888888887 PP

  == domain 3  score: -3.3 bits;  conditional E-value: 8.7
                 GSTT-SSCES CS
  Dockerin_1  37 aDvNgDGrvn 46 
                 +D ++ G+v+
  KOO23513.1 194 LDADKSGEVS 203
                 5667777665 PP

  == domain 4  score: 5.3 bits;  conditional E-value: 0.018
                 GGSTT-SSCESHHHHH CS
  Dockerin_1  36 aaDvNgDGrvnalDal 51 
                 a D NgDG+v    ++
  KOO23513.1 236 AIDANGDGNVEQAELA 251
                 6899999999877665 PP

  == domain 5  score: 8.8 bits;  conditional E-value: 0.0014
                 ETTSSSC-SHHHHHHHHHHCTSSEBTTSCCCHGGGSTT-SSCES CS
  Dockerin_1   3 DVNgDgkVnalDalliinylnqregqssssngkaaDvNgDGrvn 46 
                 D NgDg+V    ++l          + + +  +++DvNgDG ++
  KOO23513.1 238 DANGDGNVEQAELALYLSRKG-YAAEAAATIFATLDVNGDGLIS 280
                 889999999888777544444.4678888888999999999887 PP

>> TPR_20  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.4   0.1   0.00049      0.63      13      66 ..      74     129 ..      52     149 .. 0.85
   2 ?    1.5   0.0       0.3   3.9e+02      35      66 ..     180     213 ..     151     215 .. 0.83
   3 ?    2.5   0.0      0.15   1.9e+02      13      52 ..     235     274 ..     226     294 .. 0.80

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00049
      TPR_20  13 aalaanpddldarldlAlallaagryeeAleqLleilkrdrkw..eddaarkqllk 66 
                 +a+ +n d +   ++l ++l + g  eeA+++L+e++ +d +   ++++ r+++++
  KOO23513.1  74 DAIDTNADGVISVVELRTHLSSIGYAEEAADKLFELIDADENGecSREELRNAFVE 129
                 5666777777778888899999****************999875578888888776 PP

  == domain 2  score: 1.5 bits;  conditional E-value: 0.3
      TPR_20  35 agryeeAleqLleilkrdrkw..eddaarkqllk 66 
                  g + +A+e+++++l +d++   +++++r+++l 
  KOO23513.1 180 IGYEPAAAERFFALLDADKSGevSRNEVREAFLR 213
                 5777899********9999764478888888875 PP

  == domain 3  score: 2.5 bits;  conditional E-value: 0.15
      TPR_20  13 aalaanpddldarldlAlallaagryeeAleqLleilkrd 52 
                  a+ an d +  + +lAl l  +g  +eA++ +++ l  +
  KOO23513.1 235 VAIDANGDGNVEQAELALYLSRKGYAAEAAATIFATLDVN 274
                 56777778888899****************9999988655 PP

>> EF-hand_14  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.2   0.0      0.01        13       2      31 ..      69      98 ..      68     101 .. 0.92
   2 ?    3.1   0.0     0.093   1.2e+02       2      40 ..     103     138 ..     102     150 .. 0.81
   3 ?    0.8   0.0      0.49   6.3e+02       2      30 ..     153     181 ..     152     185 .. 0.92
   4 ?   -2.8   0.0       6.7   8.5e+03       3      25 ..     188     210 ..     182     219 .. 0.76
   5 ?   -1.0   0.0       1.8   2.3e+03       2      30 ..     230     258 ..     229     262 .. 0.89

  Alignments for each domain:
  == domain 1  score: 6.2 bits;  conditional E-value: 0.01
  EF-hand_14  2 edllfdlfkdeetdklsvakllkaLaetGi 31
                +d++fd ++++ ++ +sv +l ++L++ G 
  KOO23513.1 69 SDAMFDAIDTNADGVISVVELRTHLSSIGY 98
                699************************996 PP

  == domain 2  score: 3.1 bits;  conditional E-value: 0.093
  EF-hand_14   2 edllfdlfkdeetdklsvakllkaLaetGirkdDpRLke 40 
                 +d lf+l++ +e++++s ++l +a  e   +++Dp L+ 
  KOO23513.1 103 ADKLFELIDADENGECSREELRNAFVE---HSQDPSLQA 138
                 799***************999998776...456666655 PP

  == domain 3  score: 0.8 bits;  conditional E-value: 0.49
  EF-hand_14   2 edllfdlfkdeetdklsvakllkaLaetG 30 
                 +d+ fd  ++++++ +s +++ k++++ G
  KOO23513.1 153 ADAFFDAVDSNGDGAVSPQEMRKHVSSIG 181
                 6999*******************999988 PP

  == domain 4  score: -2.8 bits;  conditional E-value: 6.7
  EF-hand_14   3 dllfdlfkdeetdklsvakllka 25 
                 +  f l++ ++++++s ++  +a
  KOO23513.1 188 ERFFALLDADKSGEVSRNEVREA 210
                 66788888888888887776554 PP

  == domain 5  score: -1.0 bits;  conditional E-value: 1.8
  EF-hand_14   2 edllfdlfkdeetdklsvakllkaLaetG 30 
                 +d +f  ++ +++++++ a+l   L+ +G
  KOO23513.1 230 ADTIFVAIDANGDGNVEQAELALYLSRKG 258
                 699******9********99999999888 PP

>> EF-hand_9  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.1   0.0    0.0052       6.7       1      40 [.      70     106 ..      70     118 .. 0.77
   2 ?   -3.4   0.1       9.8   1.3e+04       1      15 [.     154     168 ..     154     169 .. 0.82
   3 ?    1.5   0.0      0.31   3.9e+02       1      16 [.     188     203 ..     188     212 .. 0.88
   4 ?    1.6   0.0      0.29   3.7e+02       1      26 [.     231     256 ..     231     275 .. 0.89

  Alignments for each domain:
  == domain 1  score: 7.1 bits;  conditional E-value: 0.0052
   EF-hand_9   1 etvFevcDtqktGrVpvsrlidyLravtaqdpeeseLeel 40 
                 +++F++ Dt+  G++ v +l + L   +     e + ++l
  KOO23513.1  70 DAMFDAIDTNADGVISVVELRTHLSSIGY---AEEAADKL 106
                 689*****************999998887...34444444 PP

  == domain 2  score: -3.4 bits;  conditional E-value: 9.8
   EF-hand_9   1 etvFevcDtqktGrV 15 
                 ++ F++ D +  G V
  KOO23513.1 154 DAFFDAVDSNGDGAV 168
                 578999999988887 PP

  == domain 3  score: 1.5 bits;  conditional E-value: 0.31
   EF-hand_9   1 etvFevcDtqktGrVp 16 
                 e+ F + D +k G+V 
  KOO23513.1 188 ERFFALLDADKSGEVS 203
                 578***********96 PP

  == domain 4  score: 1.6 bits;  conditional E-value: 0.29
   EF-hand_9   1 etvFevcDtqktGrVpvsrlidyLra 26 
                 +t+F + D +  G+V  ++l  yL  
  KOO23513.1 231 DTIFVAIDANGDGNVEQAELALYLSR 256
                 789**************999999975 PP

>> EF-hand_13  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.0   0.0      0.14   1.8e+02      50      78 ..      98     126 ..      95     135 .. 0.87
   2 ?   -0.9   0.0       1.1   1.5e+03      59      77 ..     157     175 ..     149     179 .. 0.82
   3 ?   -0.4   0.0       0.8     1e+03      55      77 ..     187     209 ..     181     213 .. 0.59
   4 ?   -3.5   0.0       7.6   9.7e+03      57      75 ..     232     250 ..     231     251 .. 0.83
   5 ?    5.2   0.0     0.015        19      48      79 ..     257     288 ..     254     295 .. 0.89

  Alignments for each domain:
  == domain 1  score: 2.0 bits;  conditional E-value: 0.14
  EF-hand_13  50 Yietviarifysvnrswsgkitlkelrks 78 
                 Y+e +  ++f  ++  ++g+++ +elr++
  KOO23513.1  98 YAEEAADKLFELIDADENGECSREELRNA 126
                 788888999999999**********9987 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 1.1
  EF-hand_13  59 fysvnrswsgkitlkelrk 77 
                 f +v+++++g ++ +e+rk
  KOO23513.1 157 FDAVDSNGDGAVSPQEMRK 175
                 5579999999999999998 PP

  == domain 3  score: -0.4 bits;  conditional E-value: 0.8
  EF-hand_13  55 iarifysvnrswsgkitlkelrk 77 
                  +r f  ++  +sg+++ +e+r+
  KOO23513.1 187 AERFFALLDADKSGEVSRNEVRE 209
                 45555556666666666666554 PP

  == domain 4  score: -3.5 bits;  conditional E-value: 7.6
  EF-hand_13  57 rifysvnrswsgkitlkel 75 
                 +if +++ +++g++ + el
  KOO23513.1 232 TIFVAIDANGDGNVEQAEL 250
                 6999999999999988776 PP

  == domain 5  score: 5.2 bits;  conditional E-value: 0.015
  EF-hand_13  48 drYietviarifysvnrswsgkitlkelrksd 79 
                 + Y+  + a+if +++ +++g i+ +elr++ 
  KOO23513.1 257 KGYAAEAAATIFATLDVNGDGLISREELRNGY 288
                 56999999*********************985 PP

>> OAM_dimer  Dimerisation domain of d-ornithine 4,5-aminomutase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.4   0.0      0.17   2.2e+02       7      53 ..      77     124 ..      75     151 .. 0.75
   2 ?    7.8   0.0    0.0035       4.5       7      59 ..     238     291 ..     233     294 .. 0.90

  Alignments for each domain:
  == domain 1  score: 2.4 bits;  conditional E-value: 0.17
                 SSTT--EEEE.EEEESS-SCHHHHHHHHHHHHCTTSEEEEEEEEEEEE CS
   OAM_dimer   7 dtlnDGvvql.sftLPvpaeeeAeeAAlelakkmGledpeVvhkeelh 53 
                 dt +DGv+++ ++   ++    AeeAA +l + +  ++   +++eel+
  KOO23513.1  77 DTNADGVISVvELRTHLSSIGYAEEAADKLFELIDADENGECSREELR 124
                 8999999874267777777789999*9999887776666666666655 PP

  == domain 2  score: 7.8 bits;  conditional E-value: 0.0035
                 SSTT--EE.EEEEEESS-SCHHHHHHHHHHHHCTTSEEEEEEEEEEEETTEEEE CS
   OAM_dimer   7 dtlnDGvv.qlsftLPvpaeeeAeeAAlelakkmGledpeVvhkeelheeftff 59 
                 d  +DG v q ++ L ++ +  A eAA+ + + + ++    +++eel++++ ++
  KOO23513.1 238 DANGDGNVeQAELALYLSRKGYAAEAAATIFATLDVNGDGLISREELRNGYVRY 291
                 7889**99678999999999***************************9999876 PP

>> Arm-DNA-bind_1  Bacteriophage lambda integrase, Arm DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   0.00027      0.34      26      58 ..     209     241 ..     202     255 .. 0.88

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00027
                     TSEEEEE-TTTS-EEEEESSHHHHHHHHHHHHH CS
  Arm-DNA-bind_1  26 kvYyrYrhPvtgkfhsLGtdereAieeAveaNt 58 
                     + + rY +P  +  ++LGt e++ i  A++aN 
      KOO23513.1 209 EAFLRYEDPALRLALGLGTSEADTIFVAIDANG 241
                     56889***************************5 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (348 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       364  (0.0203023); expected 358.6 (0.02)
Passed bias filter:                      300  (0.0167327); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                        14  (0.000780858); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              14  [number of targets reported over threshold]
# CPU time: 0.49u 0.26s 00:00:00.75 Elapsed: 00:00:00.43
# Mc/sec: 2453.99
//
Query:       KOO23514.1  [L=260]
Description: 50s ribosomal protein l1 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.7e-41  142.2   0.0    2.1e-41  141.9   0.0    1.0  1  Ribosomal_L1  Ribosomal protein L1p/L10e family


Domain annotation for each model (and alignments):
>> Ribosomal_L1  Ribosomal protein L1p/L10e family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  141.9   0.0   1.2e-45   2.1e-41       3     204 .]      60     249 ..      58     249 .. 0.96

  Alignments for each domain:
  == domain 1  score: 141.9 bits;  conditional E-value: 1.2e-45
                   HHS-SSS--EEEEEEEESSS-TTSGGG--EEEEE-STSTSSCS-EEEEE-HHHHH...HHHHTT..-SEEETCHHHHHHT-HHHHHHTCCH-SEEEE CS
  Ribosomal_L1   3 khakkkfdesveialnlttkkpkkadqrkpgkipLphplgkevkiclitkdpqaeyakeakeagriakviglkklkkkyksfeakrkllkefdlfla 99 
                   ++a ++  esv+ial+l ++++k++d r++g++ Lph++gk+ +++++++++ ae   ea++ag  a+v+g ++l +++       k+  +f+ ++a
    KOO23514.1  60 AYACARYPESVDIALRL-NTDVKRSDERVRGTVLLPHGTGKSIRVAVFARGELAE---EARAAG--ADVVGAEDLVEEV------LKGRLDFERVIA 144
                   566667789********.*************************************...******..*************......************ PP

                   EGGGHHHHHHHCHHHHGGGT-S-ECC..CT.BTS-HHHHHHHHCTTEEEEE-.TTTSEEEEEEEETTSSHHHHHHHHHHHHHHHHHTSTTT..SGSE CS
  Ribosomal_L1 100 ddrimpllpklLGkvfgkrkkmPipvltkgtvkedvkkevekalkstvvvrl.dkgtclsvkvGklsftaeelaeNieavvkalvekvpkk..wkni 193
                    ++++pl+ k   +++g++++mP+p+  +gtv+++++++v++a+++ v++r+  k++ +++ +G+++f++e+l  N+ ++++a+    p+   +k  
    KOO23514.1 145 APDVLPLMAK-AARTLGPKGLMPNPK--RGTVTKEITEAVKRAKGGEVEFRAdTKAGLVHATIGRAEFSNEHLRNNALTLMDAVLALRPARfkGKAP 238
                   **********.***************..***********************9557889*****************************999999**** PP

                   EEEEEEETTS- CS
  Ribosomal_L1 194 ksiylkttmsp 204
                   +si++++t++p
    KOO23514.1 239 RSITISSTTGP 249
                   *********98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (260 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       417  (0.0232584); expected 358.6 (0.02)
Passed bias filter:                      336  (0.0187406); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.25s 00:00:00.65 Elapsed: 00:00:00.39
# Mc/sec: 1996.71
//
Query:       KOO23515.1  [L=85]
Description: mitochondrial import receptor subunit tom22-1 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      7e-05   22.6   0.0      8e-05   22.4   0.0    1.1  1  Tom22     Mitochondrial import receptor subunit Tom22


Domain annotation for each model (and alignments):
>> Tom22  Mitochondrial import receptor subunit Tom22
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.4   0.0   4.5e-09     8e-05      73     124 ..      27      77 ..      14      83 .. 0.77

  Alignments for each domain:
  == domain 1  score: 22.4 bits;  conditional E-value: 4.5e-09
       Tom22  73 sissavstttslvkstlsfsGkllWvvttSaLLlGvPlaLaieeEqqlvemE 124
                 +  +++  + + +k+ l  +G+++W+v t+ L++ +Pla  ie E+ +  mE
  KOO23515.1  27 KARRVAFHVVRGAKKFLLGTGNAAWIVGTTLLVMVMPLAFEIEREESM-GME 77 
                 55555556677788889999************************9986.355 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (85 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       286  (0.0159518); expected 358.6 (0.02)
Passed bias filter:                      241  (0.0134419); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.31u 0.23s 00:00:00.54 Elapsed: 00:00:00.36
# Mc/sec: 699.22
//
Query:       KOO23516.1  [L=290]
Description: hypothetical protein Ctob_005612 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (290 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       745  (0.0415528); expected 358.6 (0.02)
Passed bias filter:                      429  (0.0239277); expected 358.6 (0.02)
Passed Vit filter:                        48  (0.00267723); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.47u 0.23s 00:00:00.70 Elapsed: 00:00:00.41
# Mc/sec: 2145.26
//
Query:       KOO23517.1  [L=231]
Description: hypothetical protein Ctob_005613 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.19   10.9   0.0       0.28   10.4   0.0    1.2  1  DUF4882   Domain of unknown function (DUF4882)


Domain annotation for each model (and alignments):
>> DUF4882  Domain of unknown function (DUF4882)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.0   1.6e-05      0.28      15      45 ..     149     179 ..     139     195 .. 0.82

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 1.6e-05
     DUF4882  15 slnsspvcqynfdatqedydlwnnehpeylp 45 
                     s+vcq  fd  + d+d+w +  p++ p
  KOO23517.1 149 FKAVSDVCQAAFDHPDTDFDEWPEVTPDHRP 179
                 556789****************999999877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (231 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       310  (0.0172904); expected 358.6 (0.02)
Passed bias filter:                      295  (0.0164538); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.21s 00:00:00.62 Elapsed: 00:00:00.38
# Mc/sec: 1818.93
//
Query:       KOO23518.1  [L=88]
Description: hypothetical protein Ctob_011978 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (88 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       186  (0.0103743); expected 358.6 (0.02)
Passed bias filter:                      181  (0.0100954); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.23s 00:00:00.56 Elapsed: 00:00:00.37
# Mc/sec: 717.44
//
Query:       KOO23519.1  [L=219]
Description: hypothetical protein Ctob_011979 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
        0.1   11.4   0.2       0.14   10.9   0.2    1.2  1  Apt1      Golgi-body localisation protein domain


Domain annotation for each model (and alignments):
>> Apt1  Golgi-body localisation protein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.2   8.1e-06      0.14      79     146 ..      37     117 ..      29     121 .. 0.78

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 8.1e-06
        Apt1  79 erlekimlasdfsdleglpemvkklqerirqleeikehfqiesk.yl..........dkegw..edrlklekelaeceeeL 146
                  r+  +ml+ d ++l++l+++v+ l+ r +qle +k++ ++e + ++          d+ ++  +  ++l++e+ e+  eL
  KOO23519.1  37 SRVGPLMLSPDKNRLAALEDEVQILKLRAKQLEILKQKAELEGQvTIpasfgtgtleDQVDLmqQRAQQLQHEILEAAAEL 117
                 567779*************************************95448998888887443333355567777777777776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (219 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       950  (0.0529868); expected 358.6 (0.02)
Passed bias filter:                      480  (0.0267723); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.22s 00:00:00.64 Elapsed: 00:00:00.37
# Mc/sec: 1772.64
//
Query:       KOO23520.1  [L=238]
Description: hypothetical protein Ctob_011972 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
        0.7   10.4   7.5        0.5   10.9   2.4    2.5  2  TPR_19    Tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> TPR_19  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.7   0.2     0.021   3.7e+02       8      44 ..      99     137 ..      98     138 .. 0.72
   2 ?   10.9   2.4   2.8e-05       0.5      25      62 ..     162     200 ..     139     205 .. 0.83

  Alignments for each domain:
  == domain 1  score: 1.7 bits;  conditional E-value: 0.021
      TPR_19   8 aeAlalleqalqedpk...naearllLAeallalgqldeA 44 
                 aeA +ll+++l +d +    ++a l  A+a+  ++q+++A
  KOO23520.1  99 AEADELLRRMLMKDKGeleEPNADL-IARAQRGSKQWQDA 137
                 5778899999777666555444444.58999999998888 PP

  == domain 2  score: 10.9 bits;  conditional E-value: 2.8e-05
      TPR_19  25 aearllLAeallalgqldeAealLdalpeedpdd.arya 62 
                 a+  l+LA+a  a+g+ +eA++l ++++++++ +  r++
  KOO23520.1 162 ARFHLGLADAAQASGREAEAKRLRQRVMADAQSSsLRWQ 200
                 56789**************************99745555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (238 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       844  (0.0470746); expected 358.6 (0.02)
Passed bias filter:                      411  (0.0229238); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.26s 00:00:00.70 Elapsed: 00:00:00.42
# Mc/sec: 1705.01
//
Query:       KOO23521.1  [L=554]
Description: enhanced disease susceptibility 5-like protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.5e-07   30.9   6.6    2.5e-07   30.9   6.6    3.6  3  Polysacc_synt_C  Polysaccharide biosynthesis C-terminal domai
    0.00021   21.0  15.1    0.00021   21.0  15.1    3.3  3  MatE             MatE


Domain annotation for each model (and alignments):
>> Polysacc_synt_C  Polysaccharide biosynthesis C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.6      0.39   3.5e+03      65      70 ..     166     171 ..     119     198 .. 0.64
   2 !   30.9   6.6   2.7e-11   2.5e-07       4      85 ..     202     285 ..     199     344 .. 0.85
   3 ?   -0.7   3.6      0.15   1.4e+03      61     106 ..     422     472 ..     413     520 .. 0.56

  Alignments for each domain:
  == domain 1  score: -2.0 bits;  conditional E-value: 0.39
  Polysacc_synt_C  65 allvva 70 
                      al++v+
       KOO23521.1 166 ALAIVC 171
                      111111 PP

  == domain 2  score: 30.9 bits;  conditional E-value: 2.7e-11
  Polysacc_synt_C   4 ilalsiiflslstvlssiLqglgrqkialkalvigalvklilnllli..plfgivGaaiatvlallvvavlnlyalrrllgikl 85 
                      i als++ + +  vl++ L g     +al+a+ ++  v+++  lll+   ++g+ Gaa+at++a+ ++++++++ ++r+l  + 
       KOO23521.1 202 IRALSLPAALVGGVLQAALLGAQDSAAALVATSVATGVNVVGDLLLVtwLKLGLSGAAWATAAAQWAATLVLVRTANRQLLGST 285
                      568888999999***********************************555669***********************99875544 PP

  == domain 3  score: -0.7 bits;  conditional E-value: 0.15
  Polysacc_synt_C  61 atvlallvvavlnlyalrrllgikl.....ellrrllkpllaalvmgivvy 106
                      at+la + + ++ l+a + +  i         +r l  pl+a++++ + v 
       KOO23521.1 422 ATALAAVSAVAIGLIATSGTALITNdetlrAAVRPLAAPLAASVLLTGFVG 472
                      555555555555555555555555552111123444444444444444433 PP

>> MatE  MatE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.0  15.1   2.3e-08   0.00021      19     159 ..      92     244 ..      75     246 .. 0.83
   2 !    7.8   0.8   0.00026       2.4      13      44 ..     349     380 ..     337     396 .. 0.77
   3 ?   -0.9   1.2      0.13   1.1e+03      71     137 ..     418     480 ..     409     502 .. 0.61

  Alignments for each domain:
  == domain 1  score: 21.0 bits;  conditional E-value: 2.3e-08
        MatE  19 lvgrlgskalAavsialsilsllfvfllglstalttlvgqa.....lGaknf..krakealrqglilllllsliiallvllfseqilslftqdee.... 106
                  +++ g++ lAa++ a+++     +++ +l++a+t l + a      G +     + + +++++ +++ +++l++ ++v +f + +l l+  +++    
  KOO23521.1  92 AAAGQGATQLAALGPATTFCDGSSYLFAFLNVATTNLYASAraaelAGGGAAggVAPSAVVQRAAKVASVCGLAALAIVCIFGRTLLALYVGHAAaana 190
                 34455999*************99999999999998665544112225555550055567899***************************9999998999 PP

        MatE 107 .vlelakrylrililgipalalqlvlsgilrgagktkvplyislislllnipln 159
                  +l  a  y+ i +l++pa ++  vl+++l ga+++ ++l+++ +++ +n++ +
  KOO23521.1 191 aLLGPATAYVTIRALSLPAALVGGVLQAALLGAQDSAAALVATSVATGVNVVGD 244
                 99999*********************************************9976 PP

  == domain 2  score: 7.8 bits;  conditional E-value: 0.00026
        MatE  13 slidtllvgrlgskalAavsialsilsllfvf 44 
                 + ++t  +++lg++ lAa++ial++ +++  +
  KOO23521.1 349 FGFMTHAAASLGAVPLAAHQIALTLYFFFLPL 380
                 556888899***************99988654 PP

  == domain 3  score: -0.9 bits;  conditional E-value: 0.13
        MatE  71 alrqglilllllsliiallvllfseqilslftqdeevlelakrylrililgipalalqlvlsgilrg 137
                  lr+++ l+++ +++i l+    +     l+t+de++ ++++ +   l+ ++++ ++  ++ g+l +
  KOO23521.1 418 LLRYATALAAVSAVAIGLI----ATSGTALITNDETLRAAVRPLAAPLAASVLLTGFVGASEGVLLA 480
                 4555555555555555555....44445566777777777777777777777777666666666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (554 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       579  (0.032294); expected 358.6 (0.02)
Passed bias filter:                      194  (0.0108205); expected 358.6 (0.02)
Passed Vit filter:                         9  (0.00050198); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.51u 0.21s 00:00:00.72 Elapsed: 00:00:00.38
# Mc/sec: 4331.30
//
Query:       KOO23522.1  [L=345]
Description: calcium calmodulin-dependent protein kinase type 1-like protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.1e-49  169.2   0.0    1.2e-49  169.0   0.0    1.0  1  Pkinase         Protein kinase domain
    2.6e-20   72.8   0.0    3.2e-20   72.5   0.0    1.1  1  Pkinase_Tyr     Protein tyrosine kinase
    9.5e-08   32.3   0.6     0.0066   16.4   0.0    2.7  3  APH             Phosphotransferase enzyme family
      2e-05   24.1   0.0    8.5e-05   22.0   0.0    1.8  2  Kinase-like     Kinase-like
    2.3e-05   23.3   0.0    4.6e-05   22.4   0.0    1.4  2  Pkinase_fungal  Fungal protein kinase
      0.004   16.5   0.0      0.008   15.5   0.0    1.5  1  Kdo             Lipopolysaccharide kinase (Kdo/WaaP) family
  ------ inclusion threshold ------
      0.037   13.6   0.0      0.067   12.8   0.0    1.3  1  Choline_kinase  Choline/ethanolamine kinase
      0.047   13.3   0.0       0.33   10.5   0.1    2.1  2  FTA2            Kinetochore Sim4 complex subunit FTA2


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  169.0   0.0   5.5e-53   1.2e-49       1     264 []      25     293 ..      25     293 .. 0.91

  Alignments for each domain:
  == domain 1  score: 169.0 bits;  conditional E-value: 5.5e-53
                 EEEEEEEEEESSEEEEEEEETTTTEEEEEEEEECHCHCHHHH..HHHHHHHHHHHHHS...CTTB--EEEEEEE.SSEEEEEEE--TTEBHHHHHHHHS CS
     Pkinase   1 yekleklGeGsfGkVykaveketgkivAvKkikkekakkkke..kkvlrEikilkklk...hpnivrlyevfee.kdelylvleyveggeladllerkg 93 
                 ye  e lGeG f+kVy+a+  + + +vA+K+++    ++++e  +++++E + l++     ++++ +l ev++  +d ly+v++ v+g el++lle  g
  KOO23522.1  25 YELGEMLGEGRFSKVYSAT--KGRMHVALKEMDMATLEEDEEavDALVQETTALRRAYaasSKHVPKLHEVVQVgEDMLYVVMDQVRGCELFELLE-GG 120
                 778899*************..7999********999998888899**********9877779**********99788999***************7.79 PP

                 S--HHHHHHHHHHHHHHHHHHHHTTEE-SS-SGGGEEEETTTE.....EEE-SGTTSEESSSSCSBCTTTSCGGGS-HHHH.....TTSCBSHHHHHHH CS
     Pkinase  94 slseeeakkiakqilegleylHskgiiHrDlKpeNiLidekge.....lKitDFGlakelessskltsfvgtseYlAPEvl.....keneyskkvDvWs 182
                 slse  a+++++q++++l+ lH+++++HrD+KpeN+++++ g+     l ++DFG a+  + +  lt+  g++eY APEvl      +++y+k++D+Ws
  KOO23522.1 121 SLSEPSARRLIAQLISALSSLHRHNVVHRDVKPENLMVSDIGDpskcrLVVIDFGYAALETAEG-LTELAGSPEYAAPEVLawlddVGQPYTKACDMWS 218
                 9**************************************87777888899*******9999988.****************9998778*********** PP

                 HHHHHHHHHHSS-STTTSSHHHHHHHHHHTHHHHHHHCTSHH...HHHTTS..-HHHHHHHHHHT-SSGCCSTTHHHHHTSGGG CS
     Pkinase 183 lGvilyelltgkppfsgekgkekvekeldqlekilkilgetkeklpeasei..seeakdllkkllkkdpkkRltaeellqhpyl 264
                 +Gv+ y ll g+ p     + + +++  d+         + ++k p +s+     +akd++ ++++++ ++Rl+a++ lqh ++
  KOO23522.1 219 VGVTAYVLLVGELPHDLPGEGDLYAHVRDT---------PPNFKQPFWSSSpeAASAKDFVLSCMQVETTTRLSAMHGLQHAWF 293
                 ****************66665555555555.........789999999999556689**************************8 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   72.5   0.0   1.4e-23   3.2e-20       2     250 ..      26     282 ..      25     290 .. 0.81

  Alignments for each domain:
  == domain 1  score: 72.5 bits;  conditional E-value: 1.4e-23
                  EEEEEEEEESSEEEEEEEEETTTTSSEEEEEEEEEST...TSSHHHHHHHHHHHHHHHTS...-BTTB--EEEEEE.SSSSEEEEEE--TTEBHHHHH CS
  Pkinase_Tyr   2 elgkklGeGafGkVvegtlkgekekkevkVavKtlke...eateeekeelleeakimkkl...khpnivkllgvct.keepllivteyvkgGdLlkfL 92 
                  elg+ lGeG+f+kV+++t        +++Va+K ++    e +ee  ++l++e++ +++    + +++ kl+ v+   e+ l++v++ v+g +L + L
   KOO23522.1  26 ELGEMLGEGRFSKVYSATKG------RMHVALKEMDMatlEEDEEAVDALVQETTALRRAyaaSSKHVPKLHEVVQvGEDMLYVVMDQVRGCELFELL 117
                  6899************9988......9******99762224455557899*******976556899*********977788***************** PP

                  HHTCTTTSBHHHHHHHHHHHHHHHHHHHHTTEEEST-SGGGEEEEE.....TTEEEE-STTTHEETTTSSEEEETTSSTSGGGGS-HHHHHHSE.... CS
  Pkinase_Tyr  93 rkkekekltlkdllsfalqvAkGmeyLeskklvHrdlaarNvLlse.....nkvvkisDfGLardiekddeyvkkeeaklpvkWmapEslkekk.... 181
                  +     +l+  +  ++++q+ ++++ L+++++vHrd+   N ++s+     +    + DfG a       + +  +e   + ++ apE+l        
   KOO23522.1 118 EGG---SLSEPSARRLIAQLISALSSLHRHNVVHRDVKPENLMVSDigdpsKCRLVVIDFGYAALE----TAEGLTELAGSPEYAAPEVLAWLDdvgq 208
                  987...9999999999*****************************9888766677789***99977....445556677889*******997767789 PP

                  .EEHHHHHHHHHHHHHHHHTTSSGTTTTSHHHHHHHHHHTTEE.S-BBTTSB....HHHHHHHHHHT-SSGGGS- CS
  Pkinase_Tyr 182 .ftsksDvWsfGvllwEiftlgespypglkneevleklkegkr.lekpekcp....eelyelmkkcweedpeeRp 250
                   +t++ D+Ws Gv+ + ++  ge p+    + ++++++++     ++p   +    ++ ++++ +c++ + + R 
   KOO23522.1 209 pYTKACDMWSVGVTAYVLLV-GELPHDLPGEGDLYAHVRDTPPnFKQPFWSSspeaASAKDFVLSCMQVETTTRL 282
                  9***************8887.****98888889999886654315555322211113567788888888888776 PP

>> APH  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.2   0.1   1.4e-05     0.031      35     108 ..      68     144 ..      29     147 .. 0.77
   2 !   16.4   0.0   2.9e-06    0.0066     168     197 ..     146     178 ..     143     183 .. 0.90
   3 ?   -1.9   0.0       1.2   2.6e+03      99     117 ..     239     257 ..     185     296 .. 0.61

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 1.4e-05
                 HHHHHHHHHHHHHHHTT-B--B-CTTBS-EEETTE.......EEEEEE----EE-SSHHHHHHHHHHHHHHHHHHCCHHCH CS
         APH  35 eeirrevallrlLakagvpvPevlagdtddeeigl.......lfalieyvpgrsllrklsaaqlpellealgeflaalhqv 108
                 + +++  al r+ a++ ++vP+++   + +e+ ++         +l+e ++g sl++    + +++l+++l+++l  lh++
  KOO23522.1  68 ALVQETTALRRAYAASSKHVPKLHEVVQVGEDMLYvvmdqvrGCELFELLEGGSLSE----PSARRLIAQLISALSSLHRH 144
                 333333444555566666*******99999998888999998899999999999999....899***************97 PP

  == domain 2  score: 16.4 bits;  conditional E-value: 2.9e-06
                 EE-SS-SGGGEEEC......TTEEEEE---TT-E CS
         APH 168 llHgDlhpgNllvd....pddgrvtGviDfedag 197
                 ++H+D +p Nl+v     p + r+  viDf++a 
  KOO23522.1 146 VVHRDVKPENLMVSdigdPSKCRL-VVIDFGYAA 178
                 79**************99999998.9******96 PP

  == domain 3  score: -1.9 bits;  conditional E-value: 1.2
                 HHHHCCHHCH.-STTTB-S CS
         APH  99 geflaalhqvdpaalplad 117
                 g++ a++ +++p++  +++
  KOO23522.1 239 GDLYAHVRDTPPNFKQPFW 257
                 3333444444444444444 PP

>> Kinase-like  Kinase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.0      0.38   8.5e+02      13      71 ..      24      81 ..      14      99 .. 0.74
   2 !   22.0   0.0   3.8e-08   8.5e-05     144     256 ..     126     239 ..     114     253 .. 0.78

  Alignments for each domain:
  == domain 1  score: -1.0 bits;  conditional E-value: 0.38
  Kinase-like 13 tlvrgellkkgdrsvvfevkdqetgeplavkvfllps.easkkdlerlkeqelairllrg 71
                  +  ge+l++g +s+v+ ++       +a+k   +   e  +++++ l +++ a+r+  +
   KOO23522.1 24 RYELGEMLGEGRFSKVYSATKGR--MHVALKEMDMATlEEDEEAVDALVQETTALRRAYA 81
                 55678999999999999998877..67788888777777788888888888877777444 PP

  == domain 2  score: 22.0 bits;  conditional E-value: 3.8e-08
  Kinase-like 144 iarlllTlqlirlaanLqakglvhgkftvdnlllde.....kgglmlggftaLvragtkvvlseve..kgfaPpEllgsrggytrknktkmthkldaW 234
                   ar l+ +qli    +L+ + +vh +++++nl+        k +l++ +f+      +++   e +    +a pE+l+       +    +t + d W
   KOO23522.1 126 SARRLI-AQLISALSSLHRHNVVHRDVKPENLMVSDigdpsKCRLVVIDFGYAALETAEGL-TELAgsPEYAAPEVLAWL----DDVGQPYTKACDMW 217
                  466666.9*************************9862222256899999975544444444.333333569999999984....457779******** PP

  Kinase-like 235 qlGlviyriwclklPltlatee 256
                   +G+++y +   +lP +l+ e+
   KOO23522.1 218 SVGVTAYVLLVGELPHDLPGEG 239
                  ****************998665 PP

>> Pkinase_fungal  Fungal protein kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.9   0.0       1.9   4.3e+03     186     212 ..      71      95 ..      69     102 .. 0.76
   2 !   22.4   0.0     2e-08   4.6e-05     313     386 ..     132     200 ..     124     216 .. 0.86

  Alignments for each domain:
  == domain 1  score: -3.9 bits;  conditional E-value: 1.9
  Pkinase_fungal 186 sEaelLkkaeergvegvarlvahedve 212
                     +E++ L++a  ++ ++v +   he+v+
      KOO23522.1  71 QETTALRRAYAASSKHVPK--LHEVVQ 95 
                     6899999999999999999..556555 PP

  == domain 2  score: 22.4 bits;  conditional E-value: 2e-08
  Pkinase_fungal 313 rDaIkghrsLflkagiLHrDiSenNilitdskkegerkglLiDLDlakelsddssesgarertGTleFmaievl 386
                     ++ I ++ sL+   +++HrD+  +N+++ d  + ++++ ++iD+ +a  +     ++g  e  G +e+ a evl
      KOO23522.1 132 AQLISALSSLH-RHNVVHRDVKPENLMVSDIGDPSKCRLVVIDFGYAALET----AEGLTELAGSPEYAAPEVL 200
                     67799******.**********************************98766....3556667777777776666 PP

>> Kdo  Lipopolysaccharide kinase (Kdo/WaaP) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.0   3.6e-06     0.008     114     172 ..     121     180 ..      63     185 .. 0.78

  Alignments for each domain:
  == domain 1  score: 15.5 bits;  conditional E-value: 3.6e-06
         Kdo 114 elaeelkrallkavgrliaklhragvnHadlyaknillqqee.eeeaeiwliDldkarlr 172
                 +l+e + r+l+ ++  + + lhr +v H+d+ + n+++   +   + ++++iD+  a+l 
  KOO23522.1 121 SLSEPSARRLIAQLISALSSLHRHNVVHRDVKPENLMVSDIGdPSKCRLVVIDFGYAALE 180
                 4667777888889999999*******************9988567899999***877765 PP

>> Choline_kinase  Choline/ethanolamine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0     3e-05     0.067     146     177 ..     145     180 ..     121     186 .. 0.80

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 3e-05
                     EEE-S--SGGGEEE.....-CTTEEEE--GTT-EEE CS
  Choline_kinase 146 vfcHnDlqegNill....nkeekklvlIDFEYagyn 177
                     +  H D+ ++N+++    + ++ +lv+IDF Ya+  
      KOO23522.1 145 NVVHRDVKPENLMVsdigDPSKCRLVVIDFGYAALE 180
                     445***********999999*************875 PP

>> FTA2  Kinetochore Sim4 complex subunit FTA2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.8   0.0      0.14   3.2e+02      23      79 ..      24      80 ..      17      92 .. 0.63
   2 ?   10.5   0.1   0.00015      0.33     176     210 ..     129     163 ..      35     168 .. 0.86

  Alignments for each domain:
  == domain 1  score: 0.8 bits;  conditional E-value: 0.14
        FTA2 23 diefleyLgkglhsiVlkvkirgkeYALKlFrfleaeeleeaeedlkiprealkela 79
                ++e+ e+Lg+g  s V+ +  ++   ALK     + ee eea + l ++++al +++
  KOO23522.1 24 RYELGEMLGEGRFSKVYSATKGRMHVALKEMDMATLEEDEEAVDALVQETTALRRAY 80
                677778888888888888888888888885444444444444444444444444443 PP

  == domain 2  score: 10.5 bits;  conditional E-value: 0.00015
        FTA2 176 sqlpkllrdlkklhklgIvvrDlkeenyidgkLvD 210
                 + + +l++ l +lh++ +v+rD+k+en++ + + D
  KOO23522.1 129 RLIAQLISALSSLHRHNVVHRDVKPENLMVSDIGD 163
                 56789999********************9998888 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (345 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       492  (0.0274416); expected 358.6 (0.02)
Passed bias filter:                      440  (0.0245412); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.50u 0.27s 00:00:00.77 Elapsed: 00:00:00.41
# Mc/sec: 2519.31
//
Query:       KOO23523.1  [L=45]
Description: hypothetical protein Ctob_011975 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (45 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       191  (0.0106531); expected 358.6 (0.02)
Passed bias filter:                      162  (0.00903564); expected 358.6 (0.02)
Passed Vit filter:                         2  (0.000111551); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.21s 00:00:00.53 Elapsed: 00:00:00.37
# Mc/sec: 367.53
//
Query:       KOO23524.1  [L=703]
Description: DNA-directed RNA polymerases and iii kda polypeptide [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.7e-15   56.7   0.2    3.9e-15   55.5   0.2    1.7  1  RNA_pol_Rpb6  RNA polymerase Rpb6
    9.8e-09   35.3   0.0    2.6e-08   33.9   0.0    1.8  1  HSP20         Hsp20/alpha crystallin family
    0.00016   21.7   0.1    0.00077   19.5   0.0    2.1  2  MMR_HSR1      50S ribosome-binding GTPase
    0.00036   19.9   3.9     0.0029   16.9   0.1    2.2  2  GBP           Guanylate-binding protein, N-terminal domain
     0.0036   17.4   2.0      0.085   12.9   0.1    3.0  3  Dynamin_N     Dynamin family
  ------ inclusion threshold ------
       0.09   12.3   0.1       0.18   11.3   0.1    1.5  1  FeoB_N        Ferrous iron transport protein B
       0.21   11.2   0.6       0.39   10.3   0.1    1.7  2  DMA           DMRTA motif


Domain annotation for each model (and alignments):
>> RNA_pol_Rpb6  RNA polymerase Rpb6
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.5   0.2   1.5e-18   3.9e-15       1      49 []     603     656 ..     603     656 .. 0.94

  Alignments for each domain:
  == domain 1  score: 55.5 bits;  conditional E-value: 1.5e-18
                   HHTTSS--HHHHHHHHHHHHHHH....HT........S.S-SSSSTTCHHHHTT-S-- CS
  RNA_pol_Rpb6   1 rltskvltrYelvriaakRArQieegesl........e.tqkpvviAlrEiaegkipi 49 
                   r+t++++t+Ye +ri+++RA Qi    s+        e +++p++iAl+E+ + kip+
    KOO23524.1 603 RITTPYMTKYERARILGTRAVQI----SMnapvmvelEgETDPLQIALKELRARKIPL 656
                   79*********************....99999999997789***************95 PP

>> HSP20  Hsp20/alpha crystallin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.9   0.0     1e-11   2.6e-08       1      91 [.     428     521 ..     428     527 .. 0.91

  Alignments for each domain:
  == domain 1  score: 33.9 bits;  conditional E-value: 1e-11
                 E--SSEEEEEEEEE-TT--CCCEEEEEETTEEEEEEE--.....---TT----SS---EEEEEE--STTB-TTT-EEEEETTEEEEEEEBSS-- CS
       HSP20   1 dikeeeeefevkldvpglkkeelkvkvednrvlvkgehe...eeeedekglikerssrkFsrkftLPenvdadkvkaslkdGvLtvtvpkkepe 91 
                 di++++  +++ +dvpg+  ++++++ ++ + +vkg++     e   +k+ ++er+++ F+ +f++P++++ +  + ++ dGvL++t +    e
  KOO23524.1 428 DIVRDNALYTIIMDVPGMTSDDIRLSRQNVTTIVKGTRLrpyPELLVQKVERQERQYGDFTLTFKVPQEYERKFGSVTVVDGVLRLTFKPDADE 521
                 67889999*****************************9988888899************************99999999*******99876665 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.5   0.0     3e-07   0.00077       2     104 ..     139     250 ..     138     263 .. 0.59
   2 ?   -1.2   0.0      0.84   2.2e+03      48      58 ..     437     447 ..     385     483 .. 0.74

  Alignments for each domain:
  == domain 1  score: 19.5 bits;  conditional E-value: 3e-07
                 EEEEESTTSSHHHHHHHHHTSTEEESSSTTSSSSEEEEEEEETTEEEEEEECGGCS.....S..HHHHHHHHHHHHHHHHC...TSEEEEEEETTTTCS CS
    MMR_HSR1   2 vaivGrpNvGKStLinaltgekaivsdkpgtTrdinegrvklkgkeielvDtpGli.....e..gaseekglgkaflalee...adlillvvdaseekl 90 
                 va++G    GK+ ++n ltg++   s k+  T+   +++v+++g++++++D  G +     e   +  ek+++++f +      ad +l vv+     +
  KOO23524.1 139 VAVLGLFDKGKTFVLNHLTGSQLP-SGKKVSTKGLSFKHVDVEGTKFIVLDSEGSYapvkvEneLSVVEKEISERFIQDVIfdlADYFLCVVND----F 232
                 89******************8665.556678999999999999***********8643322111111222334444332212346666666652....4 PP

                 HHHHHHHHHHHHH....T CS
    MMR_HSR1  91 kpldeeleellee....a 104
                 + ld++  + l++    +
  KOO23524.1 233 TSLDQRYLDRLTRslqnS 250
                 444444444333323222 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 0.84
                 EEEEECGGCSS CS
    MMR_HSR1  48 ielvDtpGlie 58 
                  +++D+pG+ +
  KOO23524.1 437 TIIMDVPGMTS 447
                 46889999432 PP

>> GBP  Guanylate-binding protein, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   0.1   1.1e-06    0.0029      22      85 ..     137     193 ..     134     203 .. 0.80
   2 !    4.0   0.7      0.01        26     142     214 ..     204     283 ..     195     310 .. 0.65

  Alignments for each domain:
  == domain 1  score: 16.9 bits;  conditional E-value: 1.1e-06
                 EEEEEEEBTTSSHHHHHHHHHTBSSSSESSSCSSST-SSEEEESCE-SSSTCEEEEEEEEECBT CS
         GBP  22 vvvaivGlyRkGksfLlnklarkkkGFslrstvesetkGiliWcephpkkekvalvLlDteGlg 85 
                 +vva+ Gl+ kGk f+ln+l    +G +l s+ +  tkG+      h + e +  ++lD eG  
  KOO23524.1 137 AVVAVLGLFDKGKTFVLNHL----TGSQLPSGKKVSTKGLSF---KHVDVEGTKFIVLDSEGSY 193
                 69****************98....677899999999999854...4556666667778888865 PP

  == domain 2  score: 4.0 bits;  conditional E-value: 0.01
                 HCCHHCSSTTCEEEEEEEECESSTTTSTSCHHHHHHHHHHHTCCHCSSSHHHHHHHHH........HHHHHHHESEEEEEE CS
         GBP 142 vadeeefvkfFpslvflvRDfsleleaegklltedeyLekrLklkkgqdeklqkanll........RkcirkfFpkrkcFv 214
                 v ++e + +f ++++f + D+ l    ++ +l +++yL++  +  ++++++ q++  +         +++ ++F ++ +Fv
  KOO23524.1 204 VVEKEISERFIQDVIFDLADYFLCVVNDFTSL-DQRYLDRLTRSLQNSKKHFQEVIVVhncktvmeQEVMDHIFHSQILFV 283
                 55667778999***********9998888766.678988877777777777776433300000011334455555555555 PP

>> Dynamin_N  Dynamin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.9   0.1   3.3e-05     0.085       1      32 [.     139     169 ..     139     174 .. 0.94
   2 ?    1.7   0.1     0.092   2.4e+02     120     164 ..     212     260 ..     196     264 .. 0.82
   3 ?   -0.5   0.0      0.43   1.1e+03     103     117 ..     437     451 ..     349     463 .. 0.82

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 3.3e-05
                 EEEEEBTTTTHHHHHHHHHTS--S---SSS-- CS
   Dynamin_N   1 iavvGsqSsGKSSvlnaLlgedilprgpnptT 32 
                 +av+G + +GK+ vln+L+g++ lp+g+ + T
  KOO23524.1 139 VAVLGLFDKGKTFVLNHLTGSQ-LPSGKKVST 169
                 79********************.9***99888 PP

  == domain 2  score: 1.7 bits;  conditional E-value: 0.092
                 HHHHHHH.STTEEEEEEEETTS-CCC-CHHHHHHHHSTTBTT...EEEE CS
   Dynamin_N 120 elvkeyi.kkadiilavtsanhdlsnsealflarevdpkgkr...tivv 164
                 + ++  i + ad +l+v++  ++l +   ++l r++++ +k    +ivv
  KOO23524.1 212 RFIQDVIfDLADYFLCVVNDFTSLDQRYLDRLTRSLQNSKKHfqeVIVV 260
                 56788899999***************99999999999988876656666 PP

  == domain 3  score: -0.5 bits;  conditional E-value: 0.43
                 EEEEE---B-SSSGT CS
   Dynamin_N 103 ltlvDlPGldsvnkr 117
                   ++D+PG++s + r
  KOO23524.1 437 TIIMDVPGMTSDDIR 451
                 5689****9996655 PP

>> FeoB_N  Ferrous iron transport protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.1   7.1e-05      0.18       3      82 ..     139     218 ..     137     272 .. 0.75

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 7.1e-05
                 EEEEESTTSSHHHHHHHHHTTSEEEEESTTSSSEEEEEEEEE...TTEEEEEEE----SSSSSSSHHHHHHHHHHHCTS.SSEE CS
      FeoB_N   3 valvGnpnvGkttlfnaltgakqkvgNwpGvtvekkegklkl...kgkeveivDlPGiYslsayseeekvardflleee.pdvv 82 
                 va++G  + Gkt ++n+ltg++      +G+ v  k  ++k+   +g+++ ++D  G Y+  ++ +e +v+++ + e+  +dv+
  KOO23524.1 139 VAVLGLFDKGKTFVLNHLTGSQLP----SGKKVSTKGLSFKHvdvEGTKFIVLDSEGSYAPVKVENELSVVEKEISERFiQDVI 218
                 8999999***************98....556666666555542226899**********9977777766666666544313333 PP

>> DMA  DMRTA motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.6   0.1       3.4   8.7e+03      31      36 ..      11      16 ..      11      16 .. 0.88
   2 ?   10.3   0.1   0.00015      0.39      13      28 ..     353     368 ..     352     370 .. 0.91

  Alignments for each domain:
  == domain 1  score: -3.6 bits;  conditional E-value: 3.4
         DMA 31 vqAIEq 36
                ++AIEq
  KOO23524.1 11 LRAIEQ 16
                69***8 PP

  == domain 2  score: 10.3 bits;  conditional E-value: 0.00015
         DMA  13 nhkrsvLelvLqrCkG 28 
                 n++ svL++vLq C+G
  KOO23524.1 353 NRRFSVLQSVLQSCNG 368
                 6788***********9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (703 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       635  (0.0354175); expected 358.6 (0.02)
Passed bias filter:                      484  (0.0269954); expected 358.6 (0.02)
Passed Vit filter:                        50  (0.00278878); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.63u 0.27s 00:00:00.90 Elapsed: 00:00:00.41
# Mc/sec: 5165.17
//
Query:       KOO23525.1  [L=211]
Description: gtp-binding nuclear protein gsp1 ran [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.5e-50  170.2   0.0      3e-50  170.0   0.0    1.1  1  Ras           Ras family
    2.4e-31  108.4   0.1    6.6e-31  107.0   0.0    1.6  2  Roc           Ras of Complex, Roc, domain of DAPkinase
    5.5e-11   42.2   0.0    7.4e-11   41.8   0.0    1.1  1  Arf           ADP-ribosylation factor family
    3.5e-05   23.9   0.0    5.9e-05   23.1   0.0    1.4  1  MMR_HSR1      50S ribosome-binding GTPase
    5.6e-05   22.6   0.0      7e-05   22.3   0.0    1.1  1  Gtr1_RagA     Gtr1/RagA G protein conserved region
    0.00017   22.0   0.2     0.0013   19.1   0.2    2.1  1  RNA_helicase  RNA helicase
     0.0026   17.0   1.9        1.2    8.2   0.1    2.8  3  G-alpha       G-protein alpha subunit
     0.0032   17.4   0.2        1.1    9.2   0.1    2.2  2  RsgA_GTPase   RsgA GTPase
     0.0036   16.9   0.3      0.015   14.8   0.0    1.9  2  GTP_EFTU      Elongation factor Tu GTP binding domain
  ------ inclusion threshold ------
      0.016   15.4   0.1       0.03   14.6   0.1    1.5  1  ArgoMid       Mid domain of argonaute
      0.038   13.4   0.1      0.065   12.7   0.1    1.3  1  Pox_A32       Poxvirus A32 protein
      0.057   13.8   0.0      0.084   13.3   0.0    1.3  1  AAA_16        AAA ATPase domain
       0.07   12.8   0.0       0.12   12.1   0.0    1.4  1  AAA_24        AAA domain
      0.086   12.6   0.4         12    5.6   0.1    2.1  2  ATP_bind_1    Conserved hypothetical ATP binding protein
        0.1   12.1   0.0       0.17   11.4   0.0    1.3  1  AAA_7         P-loop containing dynein motor region
       0.16   12.0   0.1       0.38   10.8   0.1    1.5  1  TsaE          Threonylcarbamoyl adenosine biosynthesis protei
        0.2   11.8   0.1       0.38   10.9   0.1    1.5  1  AAA_33        AAA domain


Domain annotation for each model (and alignments):
>> Ras  Ras family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  170.0   0.0   2.9e-53     3e-50       1     160 [.       7     163 ..       7     165 .. 0.98

  Alignments for each domain:
  == domain 1  score: 170.0 bits;  conditional E-value: 2.9e-53
                 EEEEEESTTSSHHHHHHHHHHSSCSSSCTTTSSEEEEEEEEEETTEEEEEEEEEETTSGGGHHHHHHHHTTESEEEEEEETTBHHHHHTHHHHHHHHHH CS
         Ras   1 KlvlvGdsavGKtslllrfvkdkFkeeyesTigvdfytkeievdgkevkleiwDTAGqeefkslrelyyrdaegillvyditsresfenvkkwveeikr 99 
                 KlvlvGd++vGKt+++ r+ +++F+++y +T+gv+ +  +++++  e+ +++wDTAGqe+f  lr+ yy +++++++++d+tsr +++nv +w++++ r
  KOO23525.1   7 KLVLVGDGGVGKTTFVKRHLTGEFEKKYVATLGVEVHPLQFHTNFGELYFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDMVR 105
                 9************************************************************************************************** PP

                 HSTTTSEEEEEEETTTGGGG-SS-HHHHHHHHHHHTSEEEEEBTTTTCTHHHHHHHHHHHH CS
         Ras 100 vaeenvpivLvGnKvDleekravsteegeelakelglkfletSAktnenveeafeellrei 160
                 v+e n+pivLvGnKvD++e r+v++++   ++++++l+++++SAk+n+n+e+ f  l+r++
  KOO23525.1 106 VCE-NIPIVLVGNKVDVKE-RKVKAKQIT-FHRKKNLQYYDISAKSNYNFEKPFLWLARKL 163
                 ***.7*************6.****99976.***************************9986 PP

>> Roc  Ras of Complex, Roc, domain of DAPkinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  107.0   0.0   6.3e-34   6.6e-31       1     119 [.       7     120 ..       7     121 .. 0.92
   2 ?   -1.5   0.0       2.6   2.8e+03      54      70 ..     135     151 ..     122     164 .. 0.61

  Alignments for each domain:
  == domain 1  score: 107.0 bits;  conditional E-value: 6.3e-34
                 EEEEESSTTSSHHHHHHCHCT-CCC-EEETTTTEEEEEEECGGSGGCTTBTTTTCEEEEEEEE-SGGCTTTT-HHHHCTSCEEEEEEE..GH.HHHCHH CS
         Roc   1 KvvlvGdsgvGKtsllkrfvedkfsekekstigvdfltkevtkikgvendkkvkkvklniWDtaGqerfrslhplylreaalailvyd..sr.ssenlk 96 
                 K+vlvGd+gvGKt+++kr+++++f++k+ +t+gv+++  ++++        +  ++ +n+WDtaGqe+f  l++ y+ + ++ai+++d  sr +++n+ 
  KOO23525.1   7 KLVLVGDGGVGKTTFVKRHLTGEFEKKYVATLGVEVHPLQFHT--------NFGELYFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDvtSRiTYKNVP 97 
                 99**********************************9988742........345799*******************************65334679*** PP

                 HHHHHHHHHCSSS-EEEEEE-TT CS
         Roc  97 eWlkelkkvagkspvilvgnkiD 119
                 +W +++ +v++++p++lvgnk+D
  KOO23525.1  98 NWHRDMVRVCENIPIVLVGNKVD 120
                 **********************9 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 2.6
                 TCEEEEEEEE-SGGCTT CS
         Roc  54 kkvklniWDtaGqerfr 70 
                 +k +l+ +D++ + +++
  KOO23525.1 135 RKKNLQYYDISAKSNYN 151
                 34578888888777665 PP

>> Arf  ADP-ribosylation factor family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.8   0.0     7e-14   7.4e-11      15     136 ..       6     130 ..       3     162 .. 0.83

  Alignments for each domain:
  == domain 1  score: 41.8 bits;  conditional E-value: 7e-14
                 EEEEEEESTTSSHHHHHHHHHHSSCEE.CSSSSSEEEEEEEE....TTEEEEEEEE-SSGGGGGGGGGGCTTESEEEEEEETT-CTTHHHHHHHHHHHC CS
         Arf  15 lrilllGLDnaGKtTilkklkleelvt.tvPTigfnveelei....knlkftvwDvGGqeklRplWknYfektdavifvvDsadreRleeakeeLkall 108
                 ++++l+G  + GKtT +k+  ++e+++  v T+g +v+ l++     +l f+vwD  Gqek   l + Y+ + +  i + D++ r   ++  +  + ++
  KOO23525.1   6 FKLVLVGDGGVGKTTFVKRHLTGEFEKkYVATLGVEVHPLQFhtnfGELYFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDMV 104
                 6899**************999999876489**********986666789**********************************9999999999999998 PP

                 TSGCCTTSEEEEEEE-TTSTTSS-HHHH CS
         Arf 109 eeeelkevallvlaNKqDlpealseeel 136
                 +    +++++++++NK D++e   +++ 
  KOO23525.1 105 RV--CENIPIVLVGNKVDVKERKVKAKQ 130
                 76..5689***********987655433 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.1   0.0   5.6e-08   5.9e-05       2     114 .]       8     118 ..       7     118 .. 0.76

  Alignments for each domain:
  == domain 1  score: 23.1 bits;  conditional E-value: 5.6e-08
                 EEEEESTTSSHHHHHHH.HHTS.TEEESSSTTSSSSEEEEEEEETTEEEEEEECGGCSSHHHHHH.HHHHHHHHHHCTSEEEEEEETTTTCSHHHHHHH CS
    MMR_HSR1   2 vaivGrpNvGKStLina.ltge.kaivsdkpgtTrdinegrvklkgkeielvDtpGliegaseek.glgkaflaleeadlillvvdaseeklkpldeel 97 
                  ++vG   vGK+t++++ ltge + +  ++ g+  ++ +++ ++++  ++++Dt+G  e    +  gl++ +    ++ +i++ v ++  ++k++ +  
  KOO23525.1   8 LVLVGDGGVGKTTFVKRhLTGEfEKKYVATLGVEVHPLQFHTNFGELYFNVWDTAG-QE----KFgGLRDGYYIQGQCAIIMFDVTSR-ITYKNVPNWH 100
                 689************87367888889999*************999999********.54....4479***999877777777777644.3454443333 PP

                 HHHHHH.....TTSEEEEEEES CS
    MMR_HSR1  98 eellee.....akkplilvlnk 114
                      +     +++p++lv nk
  KOO23525.1 101 R----DmvrvcENIPIVLVGNK 118
                 3....22334578899999887 PP

>> Gtr1_RagA  Gtr1/RagA G protein conserved region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.3   0.0   6.6e-08     7e-05       1     131 [.       7     129 ..       7     158 .. 0.72

  Alignments for each domain:
  == domain 1  score: 22.3 bits;  conditional E-value: 6.6e-08
   Gtr1_RagA   1 kvLLmGksgsGKtsmrsi.iFdnylardtlrlgatidveksevrflgnltlnlwDcgGqeafveeylssqkeeifrnvgvliyVfDvesreleedletl 98 
                 k++L+G +g GKt+  +  +  ++  + + +lg+ ++  + +  ++g+l++n+wD  Gqe+f      ++  +i  +++++  +fDv+sr   +++ ++
  KOO23525.1   7 KLVLVGDGGVGKTTFVKRhLTGEFEKKYVATLGVEVHPLQFHT-NFGELYFNVWDTAGQEKFGGL---RDGYYIQGQCAII--MFDVTSRITYKNVPNW 99 
                 899**********976651666788888999****99999999.689**************9887...5788888888765..5799987666666666 PP

   Gtr1_RagA  99 keilealrqyspeakvfvlihKmDliqederee 131
                 ++ + ++    +++ +    +K+D  +++ +++
  KOO23525.1 100 HRDMVRV---CENIPIVLVGNKVDVKERKVKAK 129
                 5555444...44555666667888776544433 PP

>> RNA_helicase  RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.1   0.2   1.2e-06    0.0013       2     101 ..       9     131 ..       8     134 .. 0.81

  Alignments for each domain:
  == domain 1  score: 19.1 bits;  conditional E-value: 1.2e-06
  RNA_helicase   2 wlyGpsgeGKStlake.Lakallkkl..................klkkkdsvys.rnpeddfwdgYt..gqevvvidDfgqvkdee.npsdlaelir 75 
                   +l+G+ g+GK+t++k+ L+ +++kk+                  +l  + +  + +++     dgY   gq +++++D+ ++ + +  p++  +++r
    KOO23525.1   9 VLVGDGGVGKTTFVKRhLTGEFEKKYvatlgvevhplqfhtnfgELYFNVWDTAgQEKFGGLRDGYYiqGQCAIIMFDVTSRITYKnVPNWHRDMVR 105
                   799***********987888888888************99877522222222222444444459998789************99998999******* PP

  RNA_helicase  76 lvsstpyplnmasleekgtlftSkvv 101
                   ++++ p+ l   +++ k++ +++k +
    KOO23525.1 106 VCENIPIVLVGNKVDVKERKVKAKQI 131
                   ***************99998888765 PP

>> G-alpha  G-protein alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.6   0.1    0.0035       3.7      24      42 ..       6      24 ..       2      36 .. 0.89
   2 ?    0.1   0.0      0.34   3.5e+02     186     213 ..      35      65 ..      27      67 .. 0.83
   3 !    8.2   0.1    0.0011       1.2     267     294 ..     107     134 ..     101     166 .. 0.75

  Alignments for each domain:
  == domain 1  score: 6.6 bits;  conditional E-value: 0.0035
                EEEEEEESTTSSHHHHHHH CS
     G-alpha 24 vkllllGqseSGKsTilkq 42
                +kl+l+G ++ GK+T++k 
  KOO23525.1  6 FKLVLVGDGGVGKTTFVKR 24
                79**************995 PP

  == domain 2  score: 0.1 bits;  conditional E-value: 0.34
                 ----SEEEEEEEC....T-TEEEEEEEE-SSH CS
     G-alpha 186 lktvGisetkfev....dsklefrivdvgGqr 213
                 + t+G++ + +++    + +l f+++d++Gq 
  KOO23525.1  35 VATLGVEVHPLQFhtnfG-ELYFNVWDTAGQE 65 
                 679999999999977755.788********96 PP

  == domain 3  score: 8.2 bits;  conditional E-value: 0.0011
                 GTTSEEEEEEE-HHHHHHHCCCS-GGGC CS
     G-alpha 267 lkntpiiLflnKlDileeKlkkgklsky 294
                  +n+pi+L+ nK+D+ e+K+k ++++ +
  KOO23525.1 107 CENIPIVLVGNKVDVKERKVKAKQITFH 134
                 689*****************99988764 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.2   0.1     0.001       1.1     102     118 ..       8      24 ..       5      42 .. 0.81
   2 !    6.4   0.0    0.0075       7.9      45      95 ..     108     157 ..      89     167 .. 0.80

  Alignments for each domain:
  == domain 1  score: 9.2 bits;  conditional E-value: 0.001
                  EEEECSTTSSHHHHHHH CS
  RsgA_GTPase 102 svlvGqSGvGKStLina 118
                   vlvG  GvGK+t++++
   KOO23525.1   8 LVLVGDGGVGKTTFVKR 24 
                  59************975 PP

  == domain 2  score: 6.4 bits;  conditional E-value: 0.0075
                  TT-EEEEEEE-GGG--HHHHHHHHHHHHHHTTSEEEE--TTTHTTHHHHHH CS
  RsgA_GTPase  45 kgiepvivlnKiDlleeeeeleelkeelealgyevllvsaktkegleelke 95 
                  ++i++v+v nK+D+ e++    ++ +  ++ +++ + +sak++ ++e+   
   KOO23525.1 108 ENIPIVLVGNKVDVKERKV-KAKQITFHRKKNLQYYDISAKSNYNFEKPFL 157
                  689***********99999.6666677777889999999998888776555 PP

>> GTP_EFTU  Elongation factor Tu GTP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.2   0.1      0.57     6e+02       5      24 ..       7      26 ..       4      37 .. 0.78
   2 !   14.8   0.0   1.5e-05     0.015      59     150 ..      43     137 ..      29     178 .. 0.75

  Alignments for each domain:
  == domain 1  score: -0.2 bits;  conditional E-value: 0.57
                EEEEEESTTSSHHHHHHHHH CS
    GTP_EFTU  5 nigiighvDhGKtTLtdrLl 24
                +++++g+   GKtT++ r l
  KOO23525.1  7 KLVLVGDGGVGKTTFVKRHL 26
                5678899999****998755 PP

  == domain 2  score: 14.8 bits;  conditional E-value: 1.5e-05
                 EEEEEETTCSSEEEEEEEESSSGGGHHHHHHHHHT-SEEEEEEETTTB.....STHHHHHHHHHHHHTTTEEEEEEESCGSTHHHHHHHHHHHHHHH CS
    GTP_EFTU  59 aaisleketkkylinliDtPGHvdFskevirglrvlDgavlvvdaveG.....vepqteevlrlalkegvpiivfiNKmDrlkaelkeiveevkqkl 150
                 +  +++++  +  +n+ Dt G ++F       + +  +a++++d+++      v +  + ++r++  e++pi+++ NK+D  + ++k  + + ++k 
  KOO23525.1  43 HPLQFHTNFGELYFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRityknVPNWHRDMVRVC--ENIPIVLVGNKVDVKERKVKAKQITFHRKK 137
                 45555567778899********************************7622222555555555555..69***********99887777666665544 PP

>> ArgoMid  Mid domain of argonaute
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.6   0.1   2.8e-05      0.03      23      63 ..      79     119 ..      73     142 .. 0.83

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 2.8e-05
     ArgoMid  23 kWAilcfasqrkvkenkledfikqlvkiskdvgisleekpe 63 
                 ++Ai++f+ ++++ ++++ +  + +v++++++ i l +++ 
  KOO23525.1  79 QCAIIMFDVTSRITYKNVPNWHRDMVRVCENIPIVLVGNKV 119
                 69******************************999987654 PP

>> Pox_A32  Poxvirus A32 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.1   6.2e-05     0.065      13      35 ..       5      27 ..       1      39 [. 0.78

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 6.2e-05
     Pox_A32 13 pFrlalvGgsGsGktvyLlsLlr 35
                 F+l+lvG  G Gkt++++  l+
  KOO23525.1  5 VFKLVLVGDGGVGKTTFVKRHLT 27
                6****************996554 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.0   7.9e-05     0.084      27      62 ..       8      46 ..       7      81 .. 0.80

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 7.9e-05
      AAA_16 27 vllsGesGvGKsslv.rellralekdggif..lrgkcdq 62
                ++l+G+ GvGK++ v r+l  ++ek+++ +  ++ +  q
  KOO23525.1  8 LVLVGDGGVGKTTFVkRHLTGEFEKKYVATlgVEVHPLQ 46
                689************888888999996555455555444 PP

>> AAA_24  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   0.00011      0.12       4      22 ..       7      25 ..       6      75 .. 0.83

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 0.00011
      AAA_24  4 kiliyGpsgiGKTtlakel 22
                k++++G+ g+GKTt++k+ 
  KOO23525.1  7 KLVLVGDGGVGKTTFVKRH 25
                799*************986 PP

>> ATP_bind_1  Conserved hypothetical ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.6   0.1     0.012        12       2      15 ..      11      24 ..      10      38 .. 0.84
   2 ?    5.4   0.0     0.013        13     155     188 ..     108     141 ..      79     169 .. 0.70

  Alignments for each domain:
  == domain 1  score: 5.6 bits;  conditional E-value: 0.012
  ATP_bind_1  2 vGpaGsGKttfvga 15
                vG  G+GKttfv++
  KOO23525.1 11 VGDGGVGKTTFVKR 24
                7999********87 PP

  == domain 2  score: 5.4 bits;  conditional E-value: 0.013
  ATP_bind_1 155 lelPhvvvlnkfDllkek.lekeleffedvealsl 188
                  ++P v v nk+D+ ++k + k++ f    ++l++
  KOO23525.1 108 ENIPIVLVGNKVDVKERKvKAKQITFHR-KKNLQY 141
                 579***********76666434433332.233333 PP

>> AAA_7  P-loop containing dynein motor region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   0.00016      0.17      36      63 ..       8      36 ..       3      48 .. 0.79

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00016
       AAA_7 36 vllvGptGtGKtviikd.llkkldkekyl 63
                ++lvG+ G+GKt+ +k+ l+ +++k+ + 
  KOO23525.1  8 LVLVGDGGVGKTTFVKRhLTGEFEKKYVA 36
                789**************677777755444 PP

>> TsaE  Threonylcarbamoyl adenosine biosynthesis protein TsaE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.1   0.00036      0.38      22      41 ..       8      27 ..       2      36 .. 0.84

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00036
                EEEEESTTSSHHHHHHHHHH CS
        TsaE 22 ilLeGdLGaGKTtlvrglak 41
                ++L Gd G+GKTt+v+  + 
  KOO23525.1  8 LVLVGDGGVGKTTFVKRHLT 27
                789************98665 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.1   0.00036      0.38       3      21 ..       9      27 ..       8      42 .. 0.87

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00036
      AAA_33  3 llvGlpGsGKstlaerllk 21
                +lvG  G+GK+t+++r+l 
  KOO23525.1  9 VLVGDGGVGKTTFVKRHLT 27
                7899************984 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (211 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       637  (0.035529); expected 358.6 (0.02)
Passed bias filter:                      532  (0.0296726); expected 358.6 (0.02)
Passed Vit filter:                        83  (0.00462937); expected 17.9 (0.001)
Passed Fwd filter:                        17  (0.000948185); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              17  [number of targets reported over threshold]
# CPU time: 0.43u 0.26s 00:00:00.69 Elapsed: 00:00:00.38
# Mc/sec: 1655.74
//
Query:       KOO23526.1  [L=1845]
Description: gelsolin precursor [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.3e-14   53.9   0.0     0.0041   17.0   0.0    6.4  6  Gelsolin      Gelsolin repeat
    5.7e-07   29.5   0.1      3e-06   27.2   0.1    2.3  3  cNMP_binding  Cyclic nucleotide-binding domain
    0.00022   21.7   0.0        1.2    9.6   0.0    3.3  3  PH            PH domain
  ------ inclusion threshold ------
        3.1    5.2  17.5        4.3    4.7  17.5    1.1  1  DUF3584       Protein of unknown function (DUF3584)
        6.6    6.5  11.9         11    5.8  11.9    1.2  1  MAT1          CDK-activating kinase assembly factor MAT1


Domain annotation for each model (and alignments):
>> Gelsolin  Gelsolin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.0   0.0   1.2e-06    0.0041      28      75 ..     258     304 ..     243     305 .. 0.92
   2 ?    0.4   0.0      0.18   6.4e+02      17      69 ..     382     460 ..     381     465 .. 0.86
   3 ?    3.8   0.0     0.015        54      25      75 ..     647     697 ..     636     698 .. 0.76
   4 !   12.8   0.0   2.4e-05     0.086      11      75 ..     874     947 ..     865     948 .. 0.77
   5 ?    4.2   0.0     0.011        41       5      44 ..    1034    1073 ..    1031    1078 .. 0.86
   6 !    5.7   0.0    0.0039        14      14      36 ..    1152    1174 ..    1150    1183 .. 0.85

  Alignments for each domain:
  == domain 1  score: 17.0 bits;  conditional E-value: 1.2e-06
                 EEEEEEHTTSHHHHHHHHHHHHHHHHHCTTTTTSEEEEEETTHHHHHH CS
    Gelsolin  28 tiflWiGkessqeeknfaadlaaeldseerfplpeliredqgkeparF 75 
                 ++++W+Gk+++ + +++ a +a +l  + + ++++l+redq +e++ F
  KOO23526.1 258 EVHYWCGKHATADAQGAVAIFAIHLQ-QLLEGEARLHREDQWEESNLF 304
                 78************************.*****************9998 PP

  == domain 2  score: 0.4 bits;  conditional E-value: 0.18
                 TTSEEEEEESS......................EEEEEEHTT....SHHHHHHHHHHHHHHHHHCTTTTTSEEEEEETT CS
    Gelsolin  17 sgdcyLLdngf......................tiflWiGke....ssqeeknfaadlaaeldseerfplpeliredqg 69 
                 sg++++Ld  +                         +W G++    +   e++ a+++a  l+++++++  ++ + ++g
  KOO23526.1 382 SGGAFVLDVADstdqhagrcqegydvvagtkrvRQIVWGGSHlinkPAAAERMTAVLFAYNLHNRDHHGSSQIAVLPDG 460
                 7888899888888888888888888888888888899****999999999************98888998888887776 PP

  == domain 3  score: 3.8 bits;  conditional E-value: 0.015
                 ESSEEEEEEHTTSHHHHHHHHHHHHHHHHHCTTTTTSEEEEEETTHHHHHH CS
    Gelsolin  25 ngftiflWiGkessqeeknfaadlaaeldseerfplpeliredqgkeparF 75 
                 ++ +if+W G++s + ++ ++a+l   l ++  ++   l r+++g epa+F
  KOO23526.1 647 TEAQIFVWAGAHSVPFQRWAGAELGRALTQRAVPGAFGLCRTVEGAEPAIF 697
                 4559*********99999999999888885555555555555778888887 PP

  == domain 4  score: 12.8 bits;  conditional E-value: 2.4e-05
                 SGGGEETTSEEEEEESS..........EEEEEEHTT.SHHHHHHHHHHHHHHHHHCTTTTTSEEEEEETTHHHHHH CS
    Gelsolin  11 sssslesgdcyLLdngf..........tiflWiGke.ssqeeknfaadlaaeldseerfplpeliredqgkeparF 75 
                  +s + s++cy +++++          ++f+W+Gk+ +     +   +l+ ++  ++    +e+ + +q++ep+rF
  KOO23526.1 874 FHSIFRSDRCYMVLHTYlhaltrrkmhELFFWVGKHaDRFYFMVWRFQLTGQMA-QKVMISAEYLV-EQHQEPPRF 947
                 578899******************************665555666666666666.66666666655.666666666 PP

  == domain 5  score: 4.2 bits;  conditional E-value: 0.011
                  EEEBSSSGGGEETTSEEEEEESSEEEEEEHTTSHHHHHHH CS
    Gelsolin    5 pkvvklsssslesgdcyLLdngftiflWiGkessqeeknf 44  
                  +++v l  ssl +  +++L +    f+W Gk++s+ ++  
  KOO23526.1 1034 AQQVALRASSLIPWNSFVLQTDASQFIWHGKGASLAKREY 1073
                  578889999***********************99877655 PP

  == domain 6  score: 5.7 bits;  conditional E-value: 0.0039
                  GEETTSEEEEEESSEEEEEEHTT CS
    Gelsolin   14 slesgdcyLLdngftiflWiGke 36  
                  sl ++ ++LLd+ ++ flW+G  
  KOO23526.1 1152 SLRPESVLLLDACNQAFLWFGPS 1174
                  78899****************87 PP

>> cNMP_binding  Cyclic nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.2   0.1   8.3e-10     3e-06      12      85 ..       2      69 ..       1      72 [. 0.89
   2 ?   -2.7   0.0       1.8   6.5e+03      23      53 ..     285     315 ..     281     318 .. 0.79
   3 ?   -3.9   0.0       4.1   1.5e+04       6      23 ..     899     916 ..     898     917 .. 0.84

  Alignments for each domain:
  == domain 1  score: 27.2 bits;  conditional E-value: 8.3e-10
                  -TTSB-SEEEEEEES-EEEEEEETTS.EEEEEEE-TTEEESHHHHHHTS--SSEEEESSTEEEEEEEHHHHHHH CS
  cNMP_binding 12 rqGdpadslyivlsGevrvyrlsedgkevvlavlgpGdlfGelalltgeprtatvvAltdsellalprddflel 85
                  ++G++a+ + +vl+G++++      g+++ l+   pG+l+Ge+al++g+ r+a++ A +d +++ ++ ++++++
    KOO23526.1  2 KRGEAATFFGVVLQGTLAI--D--VGDTKFLK--YPGQLVGEMALFNGGLRSADCSATSDGVIATMTFQQLEAM 69
                  789****************..4..45446677..9*******************************99999875 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 1.8
                   EEES-EEEEEEETTS.EEEEEEE-TTEEESH CS
  cNMP_binding  23 vlsGevrvyrlsedgkevvlavlgpGdlfGe 53 
                   +l+Ge+r+ r ++  ++++++ + ++d fG 
    KOO23526.1 285 LLEGEARLHREDQWEESNLFRSYFANDEFGI 315
                   799*****88777777788888888877776 PP

  == domain 3  score: -3.9 bits;  conditional E-value: 4.1
                   TT-EEE-TTSB-SEEEEE CS
  cNMP_binding   6 agevifrqGdpadslyiv 23 
                    +e  f  G++ad++y+ 
    KOO23526.1 899 MHELFFWVGKHADRFYFM 916
                   57888999********96 PP

>> PH  PH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.2   0.0    0.0082        29      77     103 ..     136     161 ..     102     163 .. 0.76
   2 ?    2.4   0.0     0.061   2.2e+02       7      36 ..    1529    1557 ..    1526    1569 .. 0.78
   3 !    9.6   0.0   0.00035       1.2      42     101 ..    1636    1695 ..    1623    1697 .. 0.84

  Alignments for each domain:
  == domain 1  score: 5.2 bits;  conditional E-value: 0.0082
                 SSSTEEEEEEESSHHHHHHHHHHHHHH CS
          PH  77 rngsrtyllqasseeerkeWikaiqsa 103
                  +  ++ ll+a+s+ e k+W +++ + 
  KOO23526.1 136 MHF-KSMLLCAESNAETKKWAACLVRQ 161
                 333.899***************99765 PP

  == domain 2  score: 2.4 bits;  conditional E-value: 0.061
                  EEEETSSSSCSEEEEEEEEETTEEEEESST CS
          PH    7 LlkkgsgkkkswkkrwfvLkdsellyyknd 36  
                  L k + +++ +   r+f ++ds+llyy+  
  KOO23526.1 1529 LAKMTAKRG-TKVARFFLVRDSVLLYYEVN 1557
                  566666666.6677*************976 PP

  == domain 3  score: 9.6 bits;  conditional E-value: 0.00035
                  SSEEEEEESTTEEEEEEECTTSSSSTSEEEEEESTSSS..TEEEEEEESSHHHHHHHHHHHH CS
          PH   42 kepkgsislsncevvevvatedpkrkfcfelriverng..srtyllqasseeerkeWikaiq 101 
                  k p g+i+l ++ ++     ed++ +  f lr+   n+   + + + +ss+ er +Wi+a+ 
  KOO23526.1 1636 KHPSGTIPLADTGIEPL--REDEGGREGFGLRVLWYNNpeLEAVKMLCSSAAERDAWIHALV 1695
                  57999*********998..6788888888886664455335*******************95 PP

>> DUF3584  Protein of unknown function (DUF3584)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.7  17.5    0.0012       4.3     286     415 ..    1712    1837 ..    1675    1844 .. 0.80

  Alignments for each domain:
  == domain 1  score: 4.7 bits;  conditional E-value: 0.0012
     DUF3584  286 qeakaelkqqlrtledelkeaidelnqelsaakaklaakeselealeeqkkkyedadieklkadldqlpsirseleeleeeldaltekhqdvqekyd 382 
                   ++++el+  +r + d +   ++el++e+ a + + ++++++leal +++k     d+e+l+   ++++ +r+e +e+ e  d l++k q  +e+  
  KOO23526.1 1712 TKEAQELRDGARRECDTWRHLAEELREEVRANETAAQRAHAQLEALAARHK----RDLETLASRDEEIERMRREAAEAAEARDQLLDKLQRTEERAS 1804
                  34567899999*************************************986....6*******************************9999999999 PP

     DUF3584  383 rrkqkikeeleeeleklkerleaireekdrlka 415 
                  r++  ++  l+++l+   +  e+ r ++++l +
  KOO23526.1 1805 RLIDDREALLAAKLKVETSADEIARAKAEALAK 1837
                  888888888888777766665555555555433 PP

>> MAT1  CDK-activating kinase assembly factor MAT1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.8  11.9     0.003        11      75     170 ..    1734    1830 ..    1728    1844 .. 0.74

  Alignments for each domain:
  == domain 1  score: 5.8 bits;  conditional E-value: 0.003
        MAT1   75 kenkelIlknkeklkqeeeeleeleelekeekee..krkeekqeeeeekekkekakeelideLatsskdaeeiiekvkkkakkkkssekekleelnk 169 
                  +e +e++++n++ +++ +++le+l   +k+  e    r+ee +  ++e ++ ++a+++l+d+L+++++ a+++i+  ++  ++k + e+++  e+++
  KOO23526.1 1734 EELREEVRANETAAQRAHAQLEALAARHKRDLETlaSRDEEIERMRREAAEAAEARDQLLDKLQRTEERASRLIDDREALLAAKLKVETSAD-EIAR 1829
                  566899999**9999999***999999998765511555666666667777889999*******************9999888844444433.3333 PP

        MAT1  170 e 170 
                  +
  KOO23526.1 1830 A 1830
                  3 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1845 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       909  (0.0507); expected 358.6 (0.02)
Passed bias filter:                      456  (0.0254337); expected 358.6 (0.02)
Passed Vit filter:                        67  (0.00373696); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 1.11u 0.32s 00:00:01.43 Elapsed: 00:00:00.50
# Mc/sec: 11007.48
//
Query:       KOO23527.1  [L=615]
Description: dihydroxy-acid dehydratase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   1.6e-205  683.6   1.5   1.9e-205  683.4   1.5    1.0  1  ILVD_EDD  Dehydratase family
  ------ inclusion threshold ------
       0.11   12.7   0.1       0.32   11.3   0.1    1.7  2  TrkA_N    TrkA-N domain


Domain annotation for each model (and alignments):
>> ILVD_EDD  Dehydratase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  683.4   1.5  2.1e-209  1.9e-205       1     517 []      79     611 ..      79     611 .. 0.97

  Alignments for each domain:
  == domain 1  score: 683.4 bits;  conditional E-value: 2.1e-209
    ILVD_EDD   1 kpiigiansyselvpchvhlkelaeavkegveeaggvpaefntigvsDgiamgeegmrysLpsReliadsvetmleaqllDalvlisgCDKivPgllma 99 
                 kp++gia++++e +pc++hl +la+ +ke++ e g ++++fn igvsDgi+ g++gm ysL+sR+liad +et++ aq +Da++ i+gCDK++Pg++ma
  KOO23527.1  79 KPQVGIASVWWEGNPCNMHLLDLAQVAKEKCLERGLIGLRFNSIGVSDGISNGTDGMAYSLQSRDLIADGIETVMGAQYYDANISIPGCDKNMPGCIMA 177
                 8************************************************************************************************** PP

    ILVD_EDD 100 aarlniPaifvsgGpmeagkkk....kldlssvfeavgalaagkiseeeleeleeaacpgaGsCsgmgTAntmaclaealGlslpgsasipats..... 189
                 +ar+n+P+++v+gG+++ag       kld++s+f+a+g++ agki++++  ++ +++cpg+G+C+gm+TAntma+++ealG+s+p+s+sipa       
  KOO23527.1 178 MARFNRPSVMVYGGTIRAGCRPnmdeKLDIISAFQAYGEFVAGKIDDSTRLDVVRSSCPGPGACGGMYTANTMASAIEALGMSVPYSSSIPAWLpsann 276
                 ******************763345569*****************************************************************9889999 PP

    ILVD_EDD 190 ......aerkelaeeagkrivelvekdlkprdiltkeafeNAivvllalGGStNavlHllAiAreagveltlddfdelsrkvpllaklkPsgkydmedl 282
                       +e+++++e+a +++ +++++d+kprdi+tk+afeNA+ + +++GGStNa++H++A+Ar+agv++tl+df ++s+++p++a+lkPsgky medl
  KOO23527.1 277 gqgglhPEKTDEVERAVAALEHCIKHDIKPRDIMTKAAFENAVRFIMVTGGSTNATIHIIAMARSAGVDFTLKDFRRISAETPFIADLKPSGKYVMEDL 375
                 *****9********************************************************************************************* PP

    ILVD_EDD 283 hraGGvpavlkeLlkagllhgdvltvtgktlaenlee..aevkeqdvirplekplskegglavLkGnLapeGavvKtsaveeellkfegpArvfdseee 379
                 h++GG+pavlk++l++g+l+g++ltvtgkt+aenl+     +k q vi ++ekp++++g++a+L+GnLapeGav K++++e   ++f+gpAr+fd ee+
  KOO23527.1 376 HKVGGTPAVLKYMLEKGYLDGSCLTVTGKTMAENLAPlpGLAKGQMVIGTFEKPVKATGHIAILEGNLAPEGAVGKITGKE--GTSFQGPARCFDAEED 472
                 ***********************************77655559*************************************9..999************* PP

    ILVD_EDD 380 aveailkg.kikagdvvviryeGPkGgpGmpEmlkptsallgkglgkkvalitDGRfSGaskglvighvsPEAaegGpialvedGDiieidiekrtlel 477
                 +++a+l++ +  +g+v+viryeGPkGgpGm+Eml+pts ++g+glg++valitDGRfSG+s+g+++ghv+PEA++gGpialv+dGDii+id+++ ++++
  KOO23527.1 473 MMAAVLADrESLKGCVIVIRYEGPKGGPGMKEMLNPTSVVMGAGLGQDVALITDGRFSGGSHGFCVGHVAPEAQVGGPIALVKDGDIIRIDANDLSISV 571
                 *****9965999*************************************************************************************** PP

    ILVD_EDD 478 evseeelaaRraawkpekkvktrgllakyaklvssaseGA 517
                 ++s++e+a+Rraa+ p + ++trg++ +y k+vssa++G+
  KOO23527.1 572 HISDAEMAKRRAAFVPPPYKYTRGTMYRYIKTVSSAQHGC 611
                 ************9*99666667*****************8 PP

>> TrkA_N  TrkA-N domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.1   3.5e-05      0.32      32      87 ..     287     343 ..     283     355 .. 0.86
   2 ?   -4.0   0.0         2   1.8e+04      74      96 ..     470     493 ..     468     498 .. 0.62

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 3.5e-05
                 HHHHHHHHTTSEEEES-TTSHHHHHHTTGGGESEEEE-SSSH.HHHHHHHHHHHHHT CS
      TrkA_N  32 erveelreeglevvvgdatdeevLeeagiekadaviaatgdd.eanilavllakeln 87 
                 + ve++ +   +++++d   ++++ +a  e+a  +i +tg    a+i ++++a++  
  KOO23527.1 287 DEVERAVAALEHCIKHDIKPRDIMTKAAFENAVRFIMVTGGStNATIHIIAMARSAG 343
                 567777788889*********************999999977699999999999865 PP

  == domain 2  score: -4.0 bits;  conditional E-value: 2
                 HHHHHHHHHH.HHHTSSSEEEEEE CS
      TrkA_N  74 eanilavlla.kelnpkkkiiara 96 
                 e+ ++a+ la +e  +++ i+ r 
  KOO23527.1 470 EEDMMAAVLAdRESLKGCVIVIRY 493
                 666777777756666666666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (615 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       360  (0.0200792); expected 358.6 (0.02)
Passed bias filter:                      333  (0.0185733); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.54u 0.26s 00:00:00.80 Elapsed: 00:00:00.41
# Mc/sec: 4499.01
//
Query:       KOO23528.1  [L=1468]
Description: calpain family cysteine protease containing protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.5e-64  217.9   0.0    2.1e-64  217.4   0.0    1.1  1  Peptidase_C2  Calpain family cysteine protease
      2e-34  117.9   4.8    2.6e-10   40.7   0.2    6.7  6  RCC1          Regulator of chromosome condensation (RCC1) rep
    2.3e-15   55.9  15.3     0.0017   18.1   0.1    6.2  6  RCC1_2        Regulator of chromosome condensation (RCC1) rep
  ------ inclusion threshold ------
      0.031   14.6   0.0      0.057   13.7   0.0    1.3  1  Calpain_III   Calpain large subunit, domain III


Domain annotation for each model (and alignments):
>> Peptidase_C2  Calpain family cysteine protease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  217.4   0.0   4.6e-68   2.1e-64       3     296 ..     168     480 ..     167     481 .. 0.82

  Alignments for each domain:
  == domain 1  score: 217.4 bits;  conditional E-value: 4.6e-68
  Peptidase_C2   3 DpeFpaeesslfykkskkkkkkveWkRpkeive........npkfivdgasrtdikqGelgdCwllaaiasltlkekllkrvvpkeq.......... 81 
                   D  Fp+  +s++ ++     +   W+R+ ei++        + + + + ++ +di qGelg+Cw+l+a+asl + +++++r++ +            
    KOO23528.1 168 DLFFPPVARSIGNST-----SAHAWRRAVEILHddpttdkdETAVFFQSVNASDIVQGELGNCWFLSALASLVEFPEMVDRLFCTAWpksvaaarra 259
                   678999999*99833.....4579*******99999999865667788**********************************988766777877764 PP

  Peptidase_C2  82 .sfeekyaGifhfrfwrfgewvdvvvDDrlPtv..ngklvfvksaeknefWsalleKAyAklhgsyealkggstsealedftggvtesielelkeap 175
                    +  ++ +G++++rf+ +g+w+dv++DD++P++   +  vf +  +  e+W+ l+eKAyAkl+gsy +++ g  +e+l d+tg+ t  ++++  e +
    KOO23528.1 260 aKPMYDDQGLYKLRFCMHGQWMDVLIDDYFPCKgpMQGPVFSRA-HGPELWVMLVEKAYAKLQGSYWNCRLGLPNEGLLDLTGAPTIRLRFD--E-T 352
                   32234669************************622467789887.669***************************************99963..2.3 PP

  Peptidase_C2 176 kelfkilkkalergslmgcsieassaeelea....klengLvkgHaYsvtaveevel.kkekvkLirlrnPWGeveWkGawsdkskeWeevseeeke 267
                   +  f+ + +  ++++++++s+     +++++    + ++gLv gHaY+v++++++   k    +++++rnPWG++eW Gawsdks+e e  ++e  +
    KOO23528.1 353 QVSFDDFWSWDRNSCVVCASTP-GL-DTFTEgggaTEAHGLVPGHAYTVVQARRIGRgKYAGAEVLQVRNPWGKFEWGGAWSDKSREMEACRAELED 447
                   3346666655554555555554.22.2222224447789***************9765667899************************999887665 PP

  Peptidase_C2 268 kl....klkkkedgefwmsfedflknFtkleic 296
                   +     +  +++dg fwmsfedf++ F+++++c
    KOO23528.1 448 DGietnDGDEENDGMFWMSFEDFKRLFASVSVC 480
                   543444556789********************* PP

>> RCC1  Regulator of chromosome condensation (RCC1) repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.4   0.0    0.0066        30      37      50 .]     941     954 ..     926     954 .. 0.86
   2 !   35.1   0.0   3.3e-12   1.5e-08       1      50 []     957    1006 ..     957    1006 .. 0.94
   3 !   13.8   0.1   1.5e-05     0.069       1      48 [.    1009    1058 ..    1009    1060 .. 0.88
   4 !   40.7   0.2   5.9e-14   2.6e-10       2      45 ..    1064    1107 ..    1063    1108 .. 0.95
   5 !   14.3   0.0   1.1e-05     0.049       1      50 []    1123    1201 ..    1123    1201 .. 0.63
   6 ?    4.3   0.0     0.015        65       2      48 ..    1205    1253 ..    1204    1254 .. 0.85

  Alignments for each domain:
  == domain 1  score: 5.4 bits;  conditional E-value: 0.0066
                 EEEEEEETTEEEEE CS
        RCC1  37 vvkvacGddhtval 50 
                  +++ac ++h+val
  KOO23528.1 941 LSQIACSHYHSVAL 954
                 579*********97 PP

  == domain 2  score: 35.1 bits;  conditional E-value: 3.3e-12
                  TTEEEEEE--GGGTTSSSS---EEEE..EE-GGGTTS-EEEEEEETTEEEEE CS
        RCC1    1 dGrVysWGrndyGqLGlgttesvlvP..tkveglsgnrvvkvacGddhtval 50  
                  dG  +sWGr+ yG LG+g+++++  P  + ++ l+g+rv++va+G + ++al
  KOO23528.1  957 DGTTFSWGRGPYGVLGHGSEDDE--PcaRPIAALKGERVQSVAAGPYNSAAL 1006
                  8999****************999..76688*******************997 PP

  == domain 3  score: 13.8 bits;  conditional E-value: 1.5e-05
                  TTEEEEEE--GGGTTSSSS---E..EEEEE-GGGTTS-EEEEEEETTEEE CS
        RCC1    1 dGrVysWGrndyGqLGlgttesv..lvPtkveglsgnrvvkvacGddhtv 48  
                  dG+V+ WG++    L  g  ++   ++P++v+ +  +r++ +acG++ ++
  KOO23528.1 1009 DGKVLLWGWHPLATLEEGIIHETfhSTPVRVAVPLHTRIIGAACGCFGVA 1058
                  8**************999995554588******************98665 PP

  == domain 4  score: 40.7 bits;  conditional E-value: 5.9e-14
                  TEEEEEE--GGGTTSSSS---EEEEEE-GGGTTS-EEEEEEETT CS
        RCC1    2 GrVysWGrndyGqLGlgttesvlvPtkveglsgnrvvkvacGdd 45  
                  GrVy+WGr+d GqLG+g+ esv +P+ +e+l+g  + + a G++
  KOO23528.1 1064 GRVYTWGRGDSGQLGHGNLESVALPRPIETLEGVAIDQCAFGGN 1107
                  9********************************99999998875 PP

  == domain 5  score: 14.3 bits;  conditional E-value: 1.1e-05
                  TTEEEEEE--GGGTTSS................SS---EEE............EEE-....GGGTTS.......-EEEEEEETTEEEEE CS
        RCC1    1 dGrVysWGrndyGqLGl................gttesvlv............Ptkv....eglsgn.......rvvkvacGddhtval 50  
                  +G ++s+G+ ++GqLG+                       v            P +v         n       +v+k a+ d+h ++l
  KOO23528.1 1123 SGALFSCGSPSRGQLGRtyssgvdspdnllrrtT------VdigsaapvhhalPGQVlgalY----NpkdssaaPVSKLAASDSHAAVL 1201
                  599**************77666655443333220......1223333223344777755551....24444678999999999999886 PP

  == domain 6  score: 4.3 bits;  conditional E-value: 0.015
                  TEEEEEE--GGGTTSSSS---E....EEEEE-GGGTTS-EEEEEEETTEEE CS
        RCC1    2 GrVysWGrndyGqLGlgttesv....lvPtkveglsgnrvvkvacGddhtv 48  
                  G++y WG  +   L + +++ v      P +v+  +  + v+v+c ++ t+
  KOO23528.1 1205 GELYVWGAEQVAKLPNMSDQVVsmdlEEPARVPDCP--ELVDVVCAAHVTL 1253
                  99************99999666455566****9999..9999999998775 PP

>> RCC1_2  Regulator of chromosome condensation (RCC1) repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.0         2   9.1e+03       5      19 ..     772     797 ..     772     798 .. 0.71
   2 !   12.4   0.2   2.3e-05       0.1       3      29 ..     943     969 ..     942     969 .. 0.94
   3 !   18.1   0.1   3.7e-07    0.0017       1      25 [.     993    1017 ..     993    1018 .. 0.95
   4 !    9.6   1.0   0.00018      0.79      16      30 .]    1062    1076 ..    1059    1076 .. 0.93
   5 !    6.2   0.0     0.002         9      16      30 .]    1122    1136 ..    1113    1136 .. 0.86
   6 !   14.9   0.0   3.7e-06     0.017       1      24 [.    1188    1211 ..    1188    1215 .. 0.91

  Alignments for each domain:
  == domain 1  score: -3.3 bits;  conditional E-value: 2
      RCC1_2   5 saGdyH...........scaLtedGe 19 
                 ++G++H            +aL++++ 
  KOO23528.1 772 AMGYDHqlnptnahlpfVLALHASQS 797
                 57888877777777777788888875 PP

  == domain 2  score: 12.4 bits;  conditional E-value: 2.3e-05
      RCC1_2   3 svsaGdyHscaLtedGeVlcWGsNsdG 29 
                 ++++  yHs+aL  dG+ ++WG+  +G
  KOO23528.1 943 QIACSHYHSVALGKDGTTFSWGRGPYG 969
                 89********************98887 PP

  == domain 3  score: 18.1 bits;  conditional E-value: 3.7e-07
      RCC1_2    1 VksvsaGdyHscaLtedGeVlcWGs 25  
                  V sv+aG y s aLt+dG+Vl WG+
  KOO23528.1  993 VQSVAAGPYNSAALTADGKVLLWGW 1017
                  679*********************7 PP

  == domain 4  score: 9.6 bits;  conditional E-value: 0.00018
      RCC1_2   16 edGeVlcWGsNsdGQ 30  
                  e G+V++WG+ ++GQ
  KOO23528.1 1062 ERGRVYTWGRGDSGQ 1076
                  78************9 PP

  == domain 5  score: 6.2 bits;  conditional E-value: 0.002
      RCC1_2   16 edGeVlcWGsNsdGQ 30  
                  ++G+++++Gs s+GQ
  KOO23528.1 1122 TSGALFSCGSPSRGQ 1136
                  69************9 PP

  == domain 6  score: 14.9 bits;  conditional E-value: 3.7e-06
      RCC1_2    1 VksvsaGdyHscaLtedGeVlcWG 24  
                  V +++a d+H+ +Lt+ Ge++ WG
  KOO23528.1 1188 VSKLAASDSHAAVLTDMGELYVWG 1211
                  6789******************** PP

>> Calpain_III  Calpain large subunit, domain III
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.0   1.3e-05     0.057      25     122 ..     562     645 ..     558     649 .. 0.75

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 1.3e-05
  Calpain_III  25 frleleeeededeeekkctvlvslmqknrrkerkkgeelltigfavykveeeeenrklrkeffaknqevarsstfinsrevvkrfklppGeYvivPst 122
                  f+++++  +d +  e +++++  l q ++r+  +    +l++g+ +y++   e+  +l++  f+k            sr++  ++ l+pGeYv+vP t
   KOO23528.1 562 FQFTVPA-PD-SVFEVNEQLFFTLSQVDDRSPLS--PGHLDVGLVLYRI---ERGGRLTEIAFQKG-------VSDASRNLLLETYLEPGEYVVVPIT 645
                  5566655.22.22356788889999988887443..4579999999994...66778888777666.......35689******************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1468 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       299  (0.0166769); expected 358.6 (0.02)
Passed bias filter:                      268  (0.0149478); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.76u 0.26s 00:00:01.02 Elapsed: 00:00:00.44
# Mc/sec: 10104.29
//
Query:       KOO23529.1  [L=204]
Description: hypothetical protein Ctob_001186 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.016   14.9   5.2       0.39   10.6   0.1    2.5  2  IQ        IQ calmodulin-binding motif
       0.49   10.6   8.0       0.26   11.5   5.9    1.6  2  DUF3886   Protein of unknown function (DUF3886)


Domain annotation for each model (and alignments):
>> IQ  IQ calmodulin-binding motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.5   1.5    0.0019        17       2      18 ..      94     110 ..      93     113 .. 0.86
   2 ?   10.6   0.1   4.4e-05      0.39       1      18 [.     140     157 ..     140     159 .. 0.89

  Alignments for each domain:
  == domain 1  score: 5.5 bits;  conditional E-value: 0.0019
                 HHHHHHHHHHHHHHHHH CS
          IQ   2 kaaikIQaawRGylaRk 18 
                 +aa++ Qa+ RG   R 
  KOO23529.1  94 RAAVRVQAVQRGRSSRS 110
                 8***********88876 PP

  == domain 2  score: 10.6 bits;  conditional E-value: 4.4e-05
                 HHHHHHHHHHHHHHHHHH CS
          IQ   1 rkaaikIQaawRGylaRk 18 
                 ++aa+k Qa  RG  aR 
  KOO23529.1 140 TAAATKVQALTRGRSARL 157
                 58***********99996 PP

>> DUF3886  Protein of unknown function (DUF3886)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   5.9   2.9e-05      0.26      16      48 ..      19      51 ..      15      59 .. 0.92
   2 ?   -2.6   0.2      0.71   6.4e+03      26      35 ..      63      72 ..      49      77 .. 0.52

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 2.9e-05
     DUF3886 16 vlekLkakkkeLkeeeekrkeeekarreeerka 48
                +l++L+a ++eL  +e++r ++ ++r++ ++++
  KOO23529.1 19 TLKQLLAERTELATKEAERAAALEQRAITAERK 51
                689*************************99886 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 0.71
     DUF3886 26 eLkeeeekrk 35
                 L + ee++ 
  KOO23529.1 63 ALAAAEERAA 72
                3444444433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (204 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1144  (0.0638072); expected 358.6 (0.02)
Passed bias filter:                      447  (0.0249317); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.43u 0.26s 00:00:00.69 Elapsed: 00:00:00.41
# Mc/sec: 1478.93
//
Query:       KOO23530.1  [L=334]
Description: apurinic endonuclease-redox [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    6.2e-11   42.3   0.5    1.7e-10   40.9   0.5    1.6  1  Exo_endo_phos  Endonuclease/Exonuclease/phosphatase family


Domain annotation for each model (and alignments):
>> Exo_endo_phos  Endonuclease/Exonuclease/phosphatase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.9   0.5   9.3e-15   1.7e-10       2     212 ..      58     304 ..      57     314 .. 0.72

  Alignments for each domain:
  == domain 1  score: 40.9 bits;  conditional E-value: 9.3e-15
                    EEEESTG.....CHHHHTHHHHHHHHHHHHHHCTTSEEEEEEEBSCTCHHHHHHHHH........TTCEEEEECCHECSSSTTSSEEEEEECSTE. CS
                    xxxxxxx.....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx........xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx. RF
  Exo_endo_phos   2 twNvngq.....aspalgssrrsdrladlltaydaDvlgLQEvdddelsriplllal........ggflgasstsptgggggggnggavlsrfpl. 83 
                     wNv+g      +++a +   r++ l+dl+ + ++Dvl+L E + ++ ++ ++  al             +++    + + +g+ g++ l+r  l 
     KOO23530.1  58 HWNVGGLnglltGKSAEE---RKALLKDLVDKERPDVLALSEHKLQQKNVAAAEKALlellpgyaA----HWCV---CTAKNGYSGVVALVRKGLa 143
                    6********999555555...8********************888888887777777999855542....4443...5678999999999999996 PP

                    ..EEEEEEEEEETSSSSGCEEEEEEEEEEEEEEE............CCCHHGHHHHHHHHHHHHHHHHHHHHHTTSEEEEEEE-SSSTSGGGBSCG CS
                    ..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx............xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Exo_endo_phos  84 ..tslfrrtfiefndlvaalrreplaakleqlni............ashrdhdlvrdlqllalllqvealnadrgapvivaGDfNarpsdddsrvl 165
                       +l         d+v +   e  + +l ++ +               r     + ++ +      +  +a  g+pv+++GD+N+          
     KOO23530.1 144 paVAL---------DEVCPSLHEGRTITLTFDDVvavlayvpnsgqDLKRLDERIDTWEPAMRAYLKAKSSATGGGPVVLLGDLNV---------- 220
                    43222.........33333334444444444443566778888885555555555555666666777777888899**********.......... PP

                    HHHHHHCTTTH.....................H....................SSCESCETTTTTTTTTTTEB-BEEEEEECHHHCCE CS
                    xxxxxxxxxxx.....................x....................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Exo_endo_phos 166 rtrglalapap.....................v....................glyllgggptptyvtraggsrlDrilaspalalfr 212
                        ++l+ ++                     +                    +++   ++++      + g rlD++ as ala+++
     KOO23530.1 221 ----AHLDADIwnvaakhipksagctprereaFgvlladgpyvdcfrqlhpdaQGVFSYWSTRSGGQLLNRGLRLDYAVASAALAKEG 304
                    ....344444455566676666666666555505666677778888999999*****************************9888766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (334 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       588  (0.032796); expected 358.6 (0.02)
Passed bias filter:                      509  (0.0283898); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.50u 0.28s 00:00:00.78 Elapsed: 00:00:00.46
# Mc/sec: 2202.86
//
Query:       KOO23531.1  [L=1001]
Description: oligosaccharyl transferase-like protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.2e-61  208.3  17.7    6.2e-57  193.6  15.4    2.1  2  STT3      Oligosaccharyl transferase STT3 subunit
      0.004   16.8   6.7     0.0085   15.7   6.7    1.5  1  PMT       Dolichyl-phosphate-mannose-protein mannosyltransfer
  ------ inclusion threshold ------
      0.054   13.2   1.8       0.12   12.0   1.8    1.5  1  HCV_env   Hepatitis C virus envelope glycoprotein E1
       0.55   10.7   2.7         33    4.9   0.1    3.4  4  DUF2301   Uncharacterized integral membrane protein (DUF2301)


Domain annotation for each model (and alignments):
>> STT3  Oligosaccharyl transferase STT3 subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  193.6  15.4   1.4e-60   6.2e-57      19     424 ..      37     447 ..      17     453 .. 0.90
   2 !   14.9   0.0     2e-06    0.0092     424     487 ..     563     634 ..     520     635 .. 0.75

  Alignments for each domain:
  == domain 1  score: 193.6 bits;  conditional E-value: 1.4e-60
                 .CCCCCCT--S--SSCHHHHHHHCCCHHHT-C.....CCHHSSEETTSSTTT-EEESTTCCHCCC.CHHHHHHCCHHC.......HHHHHHHHCCHHHH CS
        STT3  19 dlFtdedglsylsefDpYYnyRltenllnnGfpGdvvikkknwfdhsqyyPpGsrvdygplivlLamlasaiinhsld.......vsirevclwlpall 110
                  l++   +  +++efDp++n+R+t++l++nG+     +k+ +wfd  ++yP+G r  + ++++++  ++s  i+ +++       +s+ +vc ++pa +
  KOO23531.1  37 RLYALKTFGRVIHEFDPWFNFRATKYLADNGW-----YKFFTWFDYESWYPLG-RPVGTTIYPGM-QIVSVAIWRAMRltvgdtsMSLNDVCCFVPAWF 128
                 6999****************************.....****************.6679*******.********************************* PP

                 HHHHCHHHHHHHHHHS-CCC.HHHHHHHCCC-CCCCCTTSTT--STCCCCHHHHHHHHHHHHHHHHCCS.........TTCHHHHHHHHHHHHHHTTSC CS
        STT3 111 gsLlaIpiyflvrelksdia.GllAAlllaiaPgYlsrtvaGfyDtdmfeivlllfvlffflkaiktks.........nkislaviaaliiflivlaWg 199
                 g  ++    +l++e  + +a G++AA +++i+P  l r+v G yD++ ++++++ +++f +++a+ +             i++ v+a+l++  +v+aWg
  KOO23531.1 129 GVSATCFLGLLTKECSGSYAsGVVAAGIMSIVPAHLMRSVGGGYDNESIALTCMSATFFCWVRALRNDPtatdgratrDSIVWGVMAGLAYVCMVAAWG 227
                 ***************9998669*******************************************999899******99******************** PP

                 CGGHHHHCCHHHHHHHHHCTTTS-CCHHHHHHHHHHHHHHH..CCCCCCCTTCHHHSTTTCHHCCCCHHHHHHHHCCCHHC..CCCCCHHCC.CHHTT. CS
        STT3 200 gyailiyallllfilalLiigrfelklkiavtfsviiaflviaiivllflgfqvvavseiigalgifgllqlvafgsvvvlvaelkfyqfis.lfqpgi 297
                 g  +++++l+ ++ +al   grf++kl  a+ +  +++++   ++ ++++g  ++++ e ig l++f  +q++ + +  +    l+f q     +++++
  KOO23531.1 228 GF-VFVINLIGAHAVALFFLGRFTSKLHRAYSLLFVVGTMG--AMRVPVVGWGPLKSTEQIGPLLVFIAFQILEYCERQRRNKGLSFLQLTLlRIKVTL 323
                 *8.************************************99..**************************************999999999885233444 PP

                 HHHHTT--GGGHHHHHHHHHHHHC...CCCCCTS-----TTHHHHHHHHHS---S--CCHHHCCSSSTTTTCCCHHHCHHCCHHCTCHHHHHHHHHHHH CS
        STT3 298 lsevlgligevvtalavlglialw...lgilyslldleyaklkikiiilvsvwlpvgllaltkglrfliftvPlgiifvgllleflavfvkiysvsqil 393
                  + +l+++g ++  l++  ++ ++    g++ +           +++ +v++++p    a+ + l  +  ++P+g+ + +l   ++ +f++ ys+ +++
  KOO23531.1 324 PVLILAVGGAAYLQLSMNYFGPPSarvRGLFVKHT-----RTGNPLVDSVAEHQPANQQAYQQYLSHAYELAPVGFGLSFLRWTDANSFIILYSIIAYY 417
                 45566666666666665555444411255555555.....46667788*************************************************** PP

                 HCCC-SCHCCCCCHHHHHHHCCCHHHHHHHH CS
        STT3 394 fsgvvvillmltllpvlallaavkiskifst 424
                 fs ++++ l+++l pv + l +++i + f++
  KOO23531.1 418 FSNRMAR-LVILLGPVASALGGIAIGFCFDQ 447
                 *******.9999**********999998875 PP

  == domain 2  score: 14.9 bits;  conditional E-value: 2e-06
                 HCCHHHHHHHHHHHHHH...........HHHHCT.TTTTHHH.TTHHHCHHHHHHHHHHHHHHHHHHHHHHHHHCC CS
        STT3 424 tykdekeakikvaakav...........aptksnglkeslew.kantnrdsvvitwwdyghilaveadrpVtfdgg 487
                 +y  e +++++     +           +++  +   e+  w k+ t++d+ v+ wwdyg+ +a + +r +++dg 
  KOO23531.1 563 KYSHELSEQLSQ----PsimfkarlnngKEIMLDDYREAYWWlKKTTPEDARVMAWWDYGYQIAGIGNRTTIADGN 634
                 444444444443....0223334455557777888999999*********************************95 PP

>> PMT  Dolichyl-phosphate-mannose-protein mannosyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   6.7   1.9e-06    0.0085      87     209 ..     123     251 ..     120     275 .. 0.76

  Alignments for each domain:
  == domain 1  score: 15.7 bits;  conditional E-value: 1.9e-06
         PMT  87 lfsallgslivplvyltllelgfskltallaallvllenslitls..ryilldspLlfftllsmyclvkfe......rkapfsrswwlwllltgvalgl 177
                 + +a++g+ ++ ++ l+++e   s   +++aa ++ + ++++  s      ++s+ l  + ++++c+v++        +   +r  + w +++g+a   
  KOO23531.1 123 FVPAWFGVSATCFLGLLTKECSGSYASGVVAAGIMSIVPAHLMRSvgGGYDNESIALTCMSATFFCWVRALrndptaTDGRATRDSIVWGVMAGLA--Y 219
                 679**************************************987633567899*****************98898876677889999999999865..5 PP

         PMT 178 avsvKwvglftvllvgllliwelwqllgdksl 209
                 +++v   g+f+++  ++ +   +++ lg+ + 
  KOO23531.1 220 VCMVAAWGGFVFVINLIGAHAVALFFLGRFTS 251
                 66666566666644444444444444444444 PP

>> HCV_env  Hepatitis C virus envelope glycoprotein E1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   1.8   2.7e-05      0.12     160     186 ..     210     236 ..     206     240 .. 0.86

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 2.7e-05
                 XXXXXXXXXXXXXXXXXXXXXXXXXXX CS
     HCV_env 160 hwgvlaglayfsmvgawakvlvvlllv 186
                  wgv+aglay  mv aw   + v+ l+
  KOO23531.1 210 VWGVMAGLAYVCMVAAWGGFVFVINLI 236
                 5****************9988777665 PP

>> DUF2301  Uncharacterized integral membrane protein (DUF2301)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   0.0      0.36   1.6e+03      36      61 ..       6      32 ..       2      46 .. 0.74
   2 ?   -3.3   0.0       2.5   1.1e+04      76     115 ..     153     192 ..     134     196 .. 0.66
   3 ?    3.4   0.1     0.022        97       2      34 ..     242     274 ..     241     296 .. 0.77
   4 ?    4.9   0.1    0.0074        33      48      95 ..     424     469 ..     408     479 .. 0.80

  Alignments for each domain:
  == domain 1  score: -0.6 bits;  conditional E-value: 0.36
     DUF2301 36 seslaatvveqpltl.lavGflFaalt 61
                ++ +a+++ve +l + ++vG +Fa+l 
  KOO23531.1  6 ERRVASYIVEGALFVaFTVGLYFASLE 32
                556777788777665378999999985 PP

  == domain 2  score: -3.3 bits;  conditional E-value: 2.5
     DUF2301  76 tklltllvPllllghllgllseevekvllavwavlllvfa 115
                 ++ ++ +vP+ l+  + g  ++e  +++ + ++++  v a
  KOO23531.1 153 AAGIMSIVPAHLMRSVGGGYDNESIALTCMSATFFCWVRA 192
                 5567778888888887776666655555555444445555 PP

  == domain 3  score: 3.4 bits;  conditional E-value: 0.022
     DUF2301   2 slltiHiYlaalhrllqvlwavGvlasvvlala 34 
                 +l+ +  + ++lhr+  +l++vG+++++ + + 
  KOO23531.1 242 ALFFLGRFTSKLHRAYSLLFVVGTMGAMRVPVV 274
                 66667778899***************9987655 PP

  == domain 4  score: 4.9 bits;  conditional E-value: 0.0074
     DUF2301  48 ltllavGflFaaltGivfkEafCfnrlEtklltllvPllllghllgll 95 
                   ++++G++  al Gi++  +fCf+++  + +  +v ++l g+ + l+
  KOO23531.1 424 RLVILLGPVASALGGIAI--GFCFDQFLLHPVGRIVATTLYGKPTLLA 469
                 457899**********98..8*****9999888888888888766555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1001 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       671  (0.0374254); expected 358.6 (0.02)
Passed bias filter:                      466  (0.0259914); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.74u 0.26s 00:00:01.00 Elapsed: 00:00:00.43
# Mc/sec: 6921.73
//
Query:       KOO23532.1  [L=777]
Description: zinc finger domain containing protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
      1e-18   66.7  23.1    3.2e-06   26.9   1.1    4.4  4  zf-CCCH         Zinc finger C-x8-C-x5-C-x3-H type (and simila
    3.2e-18   65.1  38.6    8.5e-06   25.7   3.7    4.4  4  zf_CCCH_4       Zinc finger domain
    8.8e-18   63.7  26.3    7.7e-07   28.8   1.2    4.4  4  zf-CCCH_4       CCCH-type zinc finger
    1.3e-09   38.7  21.3      0.056   14.1   0.3    4.5  4  Torus           Torus domain
    1.9e-07   31.3  34.4     0.0052   17.2   3.2    4.3  4  zf-CCCH_2       RNA-binding, Nab2-type zinc finger
    6.6e-06   26.3   8.3    0.00073   19.7   0.8    2.9  2  zf-CCCH_3       Zinc-finger containing family


Domain annotation for each model (and alignments):
>> zf-CCCH  Zinc finger C-x8-C-x5-C-x3-H type (and similar)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.7   0.5   1.5e-05     0.046       5      25 ..     520     539 ..     518     540 .. 0.94
   2 !   26.9   1.1   1.1e-09   3.2e-06       4      26 ..     552     573 ..     550     574 .. 0.93
   3 !   20.6   1.4   9.9e-08    0.0003       5      25 ..     634     653 ..     631     654 .. 0.94
   4 !   19.4   0.7   2.3e-07    0.0007       3      26 ..     664     686 ..     662     687 .. 0.92

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 1.5e-05
                 CBCHHHHHS--TTGGG-SSBS CS
     zf-CCCH   5 lCrffmrtGyCkyGdrCkFaH 25 
                  C++f   G C++G  CkF H
  KOO23532.1 520 VCKDFTN-GVCNRGVGCKFLH 539
                 6999999.************* PP

  == domain 2  score: 26.9 bits;  conditional E-value: 1.1e-09
                 HCBCHHHHHS--TTGGG-SSBSC CS
     zf-CCCH   4 elCrffmrtGyCkyGdrCkFaHg 26 
                 ++C++f+  G C +G++CkFaH 
  KOO23532.1 552 PPCKDFQN-GLCTRGANCKFAHE 573
                 89******.*************5 PP

  == domain 3  score: 20.6 bits;  conditional E-value: 9.9e-08
                 CBCHHHHHS--TTGGG-SSBS CS
     zf-CCCH   5 lCrffmrtGyCkyGdrCkFaH 25 
                  C++f+  G C +G++CkF H
  KOO23532.1 634 VCKDFLS-GRCARGANCKFVH 653
                 7******.************* PP

  == domain 4  score: 19.4 bits;  conditional E-value: 2.3e-07
                 CHCBCHHHHHS--TTGGG-SSBSC CS
     zf-CCCH   3 telCrffmrtGyCkyGdrCkFaHg 26 
                 ++ C++f+  G C++G+ C++ H+
  KOO23532.1 664 QPVCKDFQN-GNCSRGAGCRYKHV 686
                 689******.*************6 PP

>> zf_CCCH_4  Zinc finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   2.2   3.5e-06      0.01       1      19 []     521     539 ..     521     539 .. 0.99
   2 !   25.7   3.7   2.8e-09   8.5e-06       1      19 []     554     572 ..     554     572 .. 1.00
   3 !   25.2   2.5     4e-09   1.2e-05       1      19 []     635     653 ..     635     653 .. 0.99
   4 !   16.6   7.0     2e-06    0.0061       1      19 []     667     685 ..     667     685 .. 0.99

  Alignments for each domain:
  == domain 1  score: 15.8 bits;  conditional E-value: 3.5e-06
   zf_CCCH_4   1 CkfflqGtCkkGdkCrFaH 19 
                 Ck f +G C++G  C+F+H
  KOO23532.1 521 CKDFTNGVCNRGVGCKFLH 539
                 ******************* PP

  == domain 2  score: 25.7 bits;  conditional E-value: 2.8e-09
   zf_CCCH_4   1 CkfflqGtCkkGdkCrFaH 19 
                 Ck f++G C++G++C+FaH
  KOO23532.1 554 CKDFQNGLCTRGANCKFAH 572
                 ******************* PP

  == domain 3  score: 25.2 bits;  conditional E-value: 4e-09
   zf_CCCH_4   1 CkfflqGtCkkGdkCrFaH 19 
                 Ck fl G+C +G++C+F H
  KOO23532.1 635 CKDFLSGRCARGANCKFVH 653
                 ******************9 PP

  == domain 4  score: 16.6 bits;  conditional E-value: 2e-06
   zf_CCCH_4   1 CkfflqGtCkkGdkCrFaH 19 
                 Ck f++G+C++G+ Cr+ H
  KOO23532.1 667 CKDFQNGNCSRGAGCRYKH 685
                 *****************99 PP

>> zf-CCCH_4  CCCH-type zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.0   1.1   9.9e-05       0.3       2      21 ..     520     539 ..     519     540 .. 0.97
   2 !   28.8   1.2   2.6e-10   7.7e-07       1      22 []     552     573 ..     552     573 .. 0.96
   3 !   21.2   0.7     6e-08   0.00018       2      22 .]     634     654 ..     633     654 .. 0.96
   4 !   18.2   2.7   5.3e-07    0.0016       1      21 [.     665     685 ..     665     686 .. 0.96

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 9.9e-05
   zf-CCCH_4   2 lCpyfakGsCrfGdnCrFsH 21 
                 +C+ f++G C  G  C+F+H
  KOO23532.1 520 VCKDFTNGVCNRGVGCKFLH 539
                 8******************* PP

  == domain 2  score: 28.8 bits;  conditional E-value: 2.6e-10
   zf-CCCH_4   1 rlCpyfakGsCrfGdnCrFsHd 22 
                 ++C+ f++G C+ G nC+F+H+
  KOO23532.1 552 PPCKDFQNGLCTRGANCKFAHE 573
                 79*******************6 PP

  == domain 3  score: 21.2 bits;  conditional E-value: 6e-08
   zf-CCCH_4   2 lCpyfakGsCrfGdnCrFsHd 22 
                 +C+ f+ G+C  G nC+F H+
  KOO23532.1 634 VCKDFLSGRCARGANCKFVHE 654
                 8******************96 PP

  == domain 4  score: 18.2 bits;  conditional E-value: 5.3e-07
   zf-CCCH_4   1 rlCpyfakGsCrfGdnCrFsH 21 
                 ++C+ f++G+C  G  Cr++H
  KOO23532.1 665 PVCKDFQNGNCSRGAGCRYKH 685
                 69******************* PP

>> Torus  Torus domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.8   1.4   9.8e-05      0.29      71      92 ..     519     540 ..     502     546 .. 0.85
   2 !   12.7   0.5   5.4e-05      0.16      70      92 ..     551     573 ..     540     578 .. 0.88
   3 !   12.9   0.6   4.4e-05      0.13      68      92 ..     630     654 ..     616     664 .. 0.83
   4 !   14.1   0.3   1.9e-05     0.056      67      95 ..     661     689 ..     655     698 .. 0.85

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 9.8e-05
                 -B-HHHHHT--SSGGG-SSB-S CS
       Torus  71 yfClfFarGlCakGkkCeylHr 92 
                  +C  F+ G+C +G  C++lH+
  KOO23532.1 519 QVCKDFTNGVCNRGVGCKFLHT 540
                 79*******************6 PP

  == domain 2  score: 12.7 bits;  conditional E-value: 5.4e-05
                 --B-HHHHHT--SSGGG-SSB-S CS
       Torus  70 syfClfFarGlCakGkkCeylHr 92 
                 +  C  F  GlC++G++C++ H+
  KOO23532.1 551 KPPCKDFQNGLCTRGANCKFAHE 573
                 567999****************6 PP

  == domain 3  score: 12.9 bits;  conditional E-value: 4.4e-05
                 TT--B-HHHHHT--SSGGG-SSB-S CS
       Torus  68 kesyfClfFarGlCakGkkCeylHr 92 
                 ++  +C  F  G Ca+G++C+++H+
  KOO23532.1 630 TGGQVCKDFLSGRCARGANCKFVHE 654
                 44579*******************7 PP

  == domain 4  score: 14.1 bits;  conditional E-value: 1.9e-05
                 STT--B-HHHHHT--SSGGG-SSB-S--- CS
       Torus  67 ekesyfClfFarGlCakGkkCeylHrlPt 95 
                  +++ +C  F  G C++G+ C+y H l t
  KOO23532.1 661 VSDQPVCKDFQNGNCSRGAGCRYKHVLET 689
                 557799*******************8865 PP

>> zf-CCCH_2  RNA-binding, Nab2-type zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.7   2.4    0.0002       0.6       2      17 ..     521     539 ..     521     539 .. 0.99
   2 !   17.2   3.2   1.7e-06    0.0052       1      17 [.     553     572 ..     553     572 .. 0.99
   3 !   10.8   1.9   0.00019      0.56       2      17 ..     635     653 ..     635     653 .. 0.99
   4 !   10.4   4.0   0.00024      0.73       2      17 ..     667     685 ..     667     685 .. 0.99

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.0002
   zf-CCCH_2   2 Crffpn..C.tnpkCpFaH 17 
                 C++f n  C ++  C+F H
  KOO23532.1 521 CKDFTNgvCnRGVGCKFLH 539
                 *****************99 PP

  == domain 2  score: 17.2 bits;  conditional E-value: 1.7e-06
   zf-CCCH_2   1 pCrffpn..C.tnpkCpFaH 17 
                 pC++f n  C ++++C+FaH
  KOO23532.1 553 PCKDFQNglCtRGANCKFAH 572
                 9******************* PP

  == domain 3  score: 10.8 bits;  conditional E-value: 0.00019
   zf-CCCH_2   2 Crffpn..C.tnpkCpFaH 17 
                 C++f    C ++++C+F H
  KOO23532.1 635 CKDFLSgrCaRGANCKFVH 653
                 ******************9 PP

  == domain 4  score: 10.4 bits;  conditional E-value: 0.00024
   zf-CCCH_2   2 Crffpn..C.tnpkCpFaH 17 
                 C++f n  C +++ C+++H
  KOO23532.1 667 CKDFQNgnCsRGAGCRYKH 685
                 ******************* PP

>> zf-CCCH_3  Zinc-finger containing family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.9   1.4   0.00057       1.7       8      54 ..     521     572 ..     516     578 .. 0.72
   2 !   19.7   0.8   2.4e-07   0.00073       6      55 ..     633     686 ..     629     696 .. 0.82

  Alignments for each domain:
  == domain 1  score: 8.9 bits;  conditional E-value: 0.00057
   zf-CCCH_3   8 cyffyystctkGdscpfrhe..eaa..lGsetvctlWqegrclr.evckfrh 54 
                 c  f    c++G  c f h+  +aa   Gs   c+ +q+g c+r + ckf h
  KOO23532.1 521 CKDFTNGVCNRGVGCKFLHTggPAAppPGSKPPCKDFQNGLCTRgANCKFAH 572
                 6666677889999999988733455334888889999999998745788888 PP

  == domain 2  score: 19.7 bits;  conditional E-value: 2.4e-07
   zf-CCCH_3   6 ddcyffyystctkGdscpfrheeaalG...setvctlWqegrclr.evckfrhm 55 
                 + c  f    c++G +c f he   +     + vc+ +q+g+c r + c+++h+
  KOO23532.1 633 QVCKDFLSGRCARGANCKFVHEGQPMTevsDQPVCKDFQNGNCSRgAGCRYKHV 686
                 5577888899***********988774111567**********98457*****7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (777 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1296  (0.0722851); expected 358.6 (0.02)
Passed bias filter:                      604  (0.0336884); expected 358.6 (0.02)
Passed Vit filter:                        87  (0.00485247); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.77u 0.31s 00:00:01.08 Elapsed: 00:00:00.47
# Mc/sec: 4966.04
//
Query:       KOO23533.1  [L=741]
Description: signal transduction protein with efhand domain [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
   1.4e-141  454.4 134.2    5.3e-06   25.7   0.4   28.1 28  EF-hand_5     EF hand
   1.3e-122  390.5 135.4    4.6e-06   25.8   0.3   28.1 28  EF-hand_1     EF hand
   2.3e-115  366.9 132.6    3.3e-05   23.5   0.6   28.1 28  EF-hand_6     EF-hand domain
    2.9e-89  293.6  98.6    4.4e-10   39.9   1.6   21.9 14  EF-hand_7     EF-hand domain pair
    4.8e-58  192.8 125.9     0.0036   17.1   0.2   27.8 28  EF-hand_8     EF-hand domain pair
    2.2e-10   40.8  37.0        3.6    7.9   0.1   18.4 15  SPARC_Ca_bdg  Secreted protein acidic and rich in cysteine Ca
    2.7e-07   30.1  24.5          5    7.0   0.2   13.9 17  SHOCT         Short C-terminal domain
    0.00025   21.0  39.0       0.17   11.8   0.3   12.2 17  EF-hand_4     Cytoskeletal-regulatory complex EF hand
    0.00059   20.0  52.9       0.36   11.1   0.0   17.8 20  Dockerin_1    Dockerin type I domain
     0.0016   18.5   2.8    1.8e+02    2.5   0.0    9.0 13  PMBR          Pseudomurein-binding repeat
     0.0022   18.2   0.0         20    5.5   0.0    5.8  7  DUF2782       Protein of unknown function (DUF2782)
  ------ inclusion threshold ------
      0.048   12.0   2.5         19    3.4   0.1    4.9  5  CCD48         Coiled-coil domain-containing protein 48
      0.058   13.5   4.6         54    4.0   0.0    5.3  6  Fve           Fungal immunomodulatory protein Fve
       0.23   11.4  41.2       0.27   11.2   0.1   10.1 10  Caleosin      Caleosin related protein


Domain annotation for each model (and alignments):
>> EF-hand_5  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.8   0.2   1.3e-06    0.0016       4      21 ..     109     126 ..     109     129 .. 0.92
   2 !   25.1   0.4   6.2e-09   7.9e-06       5      23 ..     130     148 ..     127     148 .. 0.91
   3 !   15.1   0.0   9.1e-06     0.012       5      22 ..     154     171 ..     152     173 .. 0.93
   4 !   17.6   0.7   1.5e-06     0.002       5      21 ..     174     190 ..     171     195 .. 0.90
   5 !   21.2   0.4   1.1e-07   0.00014       5      22 ..     200     217 ..     197     219 .. 0.92
   6 !   19.1   0.2   4.8e-07   0.00062       2      21 ..     218     236 ..     217     237 .. 0.90
   7 !   20.3   0.2     2e-07   0.00026       5      23 ..     244     262 ..     244     265 .. 0.90
   8 !   19.8   0.5   2.9e-07   0.00037       5      21 ..     264     280 ..     261     284 .. 0.90
   9 !   19.5   0.3   3.6e-07   0.00046       4      23 ..     289     308 ..     289     310 .. 0.92
  10 !   16.9   1.1   2.4e-06    0.0031       5      22 ..     310     327 ..     307     330 .. 0.90
  11 !   17.5   0.1   1.6e-06     0.002       5      21 ..     335     351 ..     333     354 .. 0.92
  12 !   15.6   1.1   6.6e-06    0.0085       5      21 ..     355     371 ..     352     373 .. 0.91
  13 !   23.0   0.3   2.9e-08   3.7e-05       5      23 ..     381     399 ..     380     401 .. 0.91
  14 !   23.2   0.2   2.4e-08   3.1e-05       2      21 ..     398     417 ..     397     418 .. 0.91
  15 !   22.3   0.0   4.9e-08   6.2e-05       5      22 ..     425     442 ..     424     444 .. 0.91
  16 !   19.2   0.1   4.7e-07   0.00061       4      24 ..     444     464 ..     442     465 .. 0.93
  17 !   19.1   0.1   5.1e-07   0.00066       5      22 ..     471     488 ..     470     491 .. 0.89
  18 !   14.9   0.1   1.1e-05     0.014       4      22 ..     490     508 ..     488     508 .. 0.92
  19 !   18.4   0.1   8.1e-07     0.001       4      22 ..     511     529 ..     510     531 .. 0.91
  20 !   11.9   0.3   9.7e-05      0.12       5      22 ..     532     549 ..     529     551 .. 0.89
  21 !   15.7   0.0   5.9e-06    0.0076       4      21 ..     557     574 ..     557     576 .. 0.91
  22 !   20.2   0.9   2.3e-07    0.0003       4      24 ..     577     597 ..     575     598 .. 0.89
  23 !   24.4   0.9     1e-08   1.3e-05       4      23 ..     601     620 ..     599     622 .. 0.91
  24 !   21.2   0.1   1.1e-07   0.00014       5      23 ..     622     640 ..     619     642 .. 0.89
  25 !   18.9   0.3   5.7e-07   0.00073       4      22 ..     647     665 ..     645     667 .. 0.91
  26 !   22.4   0.1   4.4e-08   5.6e-05       3      22 ..     666     685 ..     665     687 .. 0.92
  27 !   19.5   0.9   3.7e-07   0.00047       5      23 ..     692     710 ..     692     712 .. 0.93
  28 !   25.7   0.4   4.1e-09   5.3e-06       4      22 ..     711     729 ..     709     732 .. 0.89

  Alignments for each domain:
  == domain 1  score: 17.8 bits;  conditional E-value: 1.3e-06
                 HHHHH-SS-SSCE-HHHH CS
   EF-hand_5   4 tFqaiDlNgDGkIskeEL 21 
                 +F+ +D++gDG+I++ E 
  KOO23533.1 109 VFDILDADGDGRITRAEY 126
                 69*************996 PP

  == domain 2  score: 25.1 bits;  conditional E-value: 6.2e-09
                 HHHH-SS-SSCE-HHHHHH CS
   EF-hand_5   5 FqaiDlNgDGkIskeELkt 23 
                 F+ iD+N+DG+Is+eE+ t
  KOO23533.1 130 FDIIDTNHDGFISREEFGT 148
                 99***************75 PP

  == domain 3  score: 15.1 bits;  conditional E-value: 9.1e-06
                 HHHH-SS-SSCE-HHHHH CS
   EF-hand_5   5 FqaiDlNgDGkIskeELk 22 
                 F+ +D++gDG++++ E +
  KOO23533.1 154 FKLLDTDGDGHLTRAEYE 171
                 999*************76 PP

  == domain 4  score: 17.6 bits;  conditional E-value: 1.5e-06
                 HHHH-SS-SSCE-HHHH CS
   EF-hand_5   5 FqaiDlNgDGkIskeEL 21 
                 F+ +D +gDG+I++ EL
  KOO23533.1 174 FDLFDNDGDGFITRAEL 190
                 9***************9 PP

  == domain 5  score: 21.2 bits;  conditional E-value: 1.1e-07
                 HHHH-SS-SSCE-HHHHH CS
   EF-hand_5   5 FqaiDlNgDGkIskeELk 22 
                 F+a+D++gDG I+keE +
  KOO23533.1 200 FDALDADGDGEITKEEYM 217
                 9***************86 PP

  == domain 6  score: 19.1 bits;  conditional E-value: 4.8e-07
                 HHHHHHH-SS-SSCE-HHHH CS
   EF-hand_5   2 kdtFqaiDlNgDGkIskeEL 21 
                 k+ F++iDl++DG+I++ E+
  KOO23533.1 218 KA-FDMIDLDRDGYITVLEF 236
                 45.***************99 PP

  == domain 7  score: 20.3 bits;  conditional E-value: 2e-07
                 HHHH-SS-SSCE-HHHHHH CS
   EF-hand_5   5 FqaiDlNgDGkIskeELkt 23 
                 F  iD++gDGk+++ E+++
  KOO23533.1 244 FALIDKDGDGKLTRKEWEE 262
                 889**************98 PP

  == domain 8  score: 19.8 bits;  conditional E-value: 2.9e-07
                 HHHH-SS-SSCE-HHHH CS
   EF-hand_5   5 FqaiDlNgDGkIskeEL 21 
                 F+ +Dl+gDGkI+k E+
  KOO23533.1 264 FKHFDLDGDGKITKAEF 280
                 888*************9 PP

  == domain 9  score: 19.5 bits;  conditional E-value: 3.6e-07
                 HHHHH-SS-SSCE-HHHHHH CS
   EF-hand_5   4 tFqaiDlNgDGkIskeELkt 23 
                 +F+ +D++gDG+I++ E ++
  KOO23533.1 289 VFELLDADGDGRITFKEYQK 308
                 69***************987 PP

  == domain 10  score: 16.9 bits;  conditional E-value: 2.4e-06
                 HHHH-SS-SSCE-HHHHH CS
   EF-hand_5   5 FqaiDlNgDGkIskeELk 22 
                 F+ +D+++DG++s+ E+ 
  KOO23533.1 310 FDILDADKDGFLSRKEFG 327
                 9***************96 PP

  == domain 11  score: 17.5 bits;  conditional E-value: 1.6e-06
                 HHHH-SS-SSCE-HHHH CS
   EF-hand_5   5 FqaiDlNgDGkIskeEL 21 
                 F ++D+++DGk+s+ E 
  KOO23533.1 335 FAKLDTDRDGKLSRKEY 351
                 99*************96 PP

  == domain 12  score: 15.6 bits;  conditional E-value: 6.6e-06
                 HHHH-SS-SSCE-HHHH CS
   EF-hand_5   5 FqaiDlNgDGkIskeEL 21 
                 F+ +D ++DG I+k E+
  KOO23533.1 355 FKLMDIDRDGMIDKREF 371
                 9***************9 PP

  == domain 13  score: 23.0 bits;  conditional E-value: 2.9e-08
                 HHHH-SS-SSCE-HHHHHH CS
   EF-hand_5   5 FqaiDlNgDGkIskeELkt 23 
                 F+ +D++gDG+I++eE+ +
  KOO23533.1 381 FSLLDVDGDGRITREEFNA 399
                 99***************75 PP

  == domain 14  score: 23.2 bits;  conditional E-value: 2.4e-08
                 HHHHHHH-SS-SSCE-HHHH CS
   EF-hand_5   2 kdtFqaiDlNgDGkIskeEL 21 
                 ++ F+ +D++gDG+I++eE+
  KOO23533.1 398 NAGFNVLDADGDGHITREEF 417
                 677****************9 PP

  == domain 15  score: 22.3 bits;  conditional E-value: 4.9e-08
                 HHHH-SS-SSCE-HHHHH CS
   EF-hand_5   5 FqaiDlNgDGkIskeELk 22 
                 F  iD++gDG+Is++E+ 
  KOO23533.1 425 FHLIDKDGDGYISRQEWH 442
                 889*************95 PP

  == domain 16  score: 19.2 bits;  conditional E-value: 4.7e-07
                 HHHHH-SS-SSCE-HHHHHHH CS
   EF-hand_5   4 tFqaiDlNgDGkIskeELktl 24 
                 +F+ +D ++DG+I++ E+ tl
  KOO23533.1 444 VFDYFDEDHDGYITAKEFNTL 464
                 7*****************997 PP

  == domain 17  score: 19.1 bits;  conditional E-value: 5.1e-07
                 HHHH-SS-SSCE-HHHHH CS
   EF-hand_5   5 FqaiDlNgDGkIskeELk 22 
                 F+ +D++gDG+I++eE  
  KOO23533.1 471 FSTLDADGDGTITREEYN 488
                 999*************86 PP

  == domain 18  score: 14.9 bits;  conditional E-value: 1.1e-05
                 HHHHH-SS-SSCE-HHHHH CS
   EF-hand_5   4 tFqaiDlNgDGkIskeELk 22 
                  F+ +D+N+ G++s eE++
  KOO23533.1 490 GFDIMDTNQNGYLSQEEFQ 508
                 59****************7 PP

  == domain 19  score: 18.4 bits;  conditional E-value: 8.1e-07
                 HHHHH-SS-SSCE-HHHHH CS
   EF-hand_5   4 tFqaiDlNgDGkIskeELk 22 
                 +F+ +D++gDGk+s+ E +
  KOO23533.1 511 FFKTLDVDGDGKLSRAEYE 529
                 79***************86 PP

  == domain 20  score: 11.9 bits;  conditional E-value: 9.7e-05
                 HHHH-SS-SSCE-HHHHH CS
   EF-hand_5   5 FqaiDlNgDGkIskeELk 22 
                 F+ iD ++DG+++k E++
  KOO23533.1 532 FDIIDYDRDGFLTKWEFM 549
                 9************99986 PP

  == domain 21  score: 15.7 bits;  conditional E-value: 5.9e-06
                 HHHHH-SS-SSCE-HHHH CS
   EF-hand_5   4 tFqaiDlNgDGkIskeEL 21 
                 +F+ +D+++DG+I++ E 
  KOO23533.1 557 LFDVLDVDMDGRITRAEY 574
                 59**************97 PP

  == domain 22  score: 20.2 bits;  conditional E-value: 2.3e-07
                 HHHHH-SS-SSCE-HHHHHHH CS
   EF-hand_5   4 tFqaiDlNgDGkIskeELktl 24 
                  F+ iD ++DGk++keE+ ++
  KOO23533.1 577 GFDIIDGDKDGKLTKEEFGAV 597
                 59****************876 PP

  == domain 23  score: 24.4 bits;  conditional E-value: 1e-08
                 HHHHH-SS-SSCE-HHHHHH CS
   EF-hand_5   4 tFqaiDlNgDGkIskeELkt 23 
                  F++iDl+gDG++++eE+++
  KOO23533.1 601 IFDKIDLDGDGFLTREEWEA 620
                 6*****************86 PP

  == domain 24  score: 21.2 bits;  conditional E-value: 1.1e-07
                 HHHH-SS-SSCE-HHHHHH CS
   EF-hand_5   5 FqaiDlNgDGkIskeELkt 23 
                 F+++Dl++DG+I+++EL  
  KOO23533.1 622 FDMFDLDHDGYITRDELHS 640
                 9***************965 PP

  == domain 25  score: 18.9 bits;  conditional E-value: 5.7e-07
                 HHHHH-SS-SSCE-HHHHH CS
   EF-hand_5   4 tFqaiDlNgDGkIskeELk 22 
                 +F+ +D++gDG I++eE +
  KOO23533.1 647 AFDSLDADGDGMITREEYE 665
                 59***************86 PP

  == domain 26  score: 22.4 bits;  conditional E-value: 4.4e-08
                 HHHHHH-SS-SSCE-HHHHH CS
   EF-hand_5   3 dtFqaiDlNgDGkIskeELk 22 
                 ++F+ +D N+DGk+s+ E+ 
  KOO23533.1 666 AAFRIMDRNRDGKLSRAEFN 685
                 67****************95 PP

  == domain 27  score: 19.5 bits;  conditional E-value: 3.7e-07
                 HHHH-SS-SSCE-HHHHHH CS
   EF-hand_5   5 FqaiDlNgDGkIskeELkt 23 
                 F+++Dl+gDG+I+++E k+
  KOO23533.1 692 FKRLDLDGDGFITFDEYKK 710
                 99**************987 PP

  == domain 28  score: 25.7 bits;  conditional E-value: 4.1e-09
                 HHHHH-SS-SSCE-HHHHH CS
   EF-hand_5   4 tFqaiDlNgDGkIskeELk 22 
                  F+++D+N+DGk+skeE++
  KOO23533.1 711 GFDMMDTNKDGKLSKEEFM 729
                 5*****************7 PP

>> EF-hand_1  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.1   5.5e-06     0.007       5      24 ..     109     128 ..     107     130 .. 0.90
   2 !   18.8   0.4   6.1e-07   0.00079       6      23 ..     130     147 ..     126     148 .. 0.92
   3 !   14.1   0.1   1.9e-05     0.025       6      24 ..     154     172 ..     154     175 .. 0.90
   4 !   18.3   0.6   8.9e-07    0.0011       3      22 ..     171     190 ..     169     194 .. 0.88
   5 !   17.7   0.5   1.4e-06    0.0018       5      26 ..     199     220 ..     197     220 .. 0.90
   6 !   18.7   0.4   6.7e-07   0.00085       1      22 [.     215     236 ..     215     239 .. 0.91
   7 !   18.3   0.1   9.2e-07    0.0012       6      27 ..     244     265 ..     244     265 .. 0.92
   8 !   25.8   0.3   3.6e-09   4.6e-06       1      24 [.     259     282 ..     259     287 .. 0.91
   9 !   19.9   0.2   2.7e-07   0.00035       5      25 ..     289     309 ..     285     310 .. 0.90
  10 !   18.5   0.5   7.6e-07   0.00098       2      26 ..     306     330 ..     305     333 .. 0.87
  11 !   14.7   0.0   1.2e-05     0.016       5      22 ..     334     351 ..     332     354 .. 0.93
  12 !   15.7   1.3   5.9e-06    0.0076       2      22 ..     351     371 ..     350     373 .. 0.91
  13 !   20.1   0.1   2.5e-07   0.00032       5      24 ..     380     399 ..     379     401 .. 0.90
  14 !   18.4   0.1   8.1e-07     0.001       6      22 ..     401     417 ..     398     421 .. 0.91
  15 !   20.3   0.0     2e-07   0.00026       6      25 ..     425     444 ..     425     445 .. 0.91
  16 !   21.3   0.3     1e-07   0.00013       1      24 [.     440     463 ..     440     466 .. 0.90
  17 !   16.4   0.1   3.6e-06    0.0047       5      23 ..     470     488 ..     469     491 .. 0.89
  18 !   17.6   0.1   1.5e-06    0.0019       6      25 ..     491     510 ..     487     511 .. 0.90
  19 !   15.5   0.1   7.3e-06    0.0093       5      24 ..     511     530 ..     509     532 .. 0.89
  20 !    8.8   0.4   0.00096       1.2       3      25 ..     529     551 ..     527     553 .. 0.83
  21 !   10.7   0.1   0.00025      0.31       5      22 ..     557     574 ..     556     578 .. 0.89
  22 !   17.0   0.8   2.3e-06    0.0029       4      24 ..     576     596 ..     573     600 .. 0.87
  23 !   19.2   1.2   4.7e-07   0.00061       4      24 ..     600     620 ..     598     623 .. 0.90
  24 !   22.7   0.3   3.5e-08   4.4e-05       1      24 [.     617     640 ..     617     642 .. 0.89
  25 !   17.9   0.3   1.2e-06    0.0015       4      26 ..     646     668 ..     645     669 .. 0.91
  26 !   20.2   0.0   2.2e-07   0.00028       1      23 [.     663     685 ..     663     689 .. 0.90
  27 !   19.8   1.3   2.9e-07   0.00038       6      25 ..     692     711 ..     692     712 .. 0.93
  28 !   22.6   0.7   3.6e-08   4.7e-05       1      23 [.     707     729 ..     707     731 .. 0.91

  Alignments for each domain:
  == domain 1  score: 15.8 bits;  conditional E-value: 5.5e-06
                 HHHHHTTTSSSEEEHHHHHH CS
   EF-hand_1   5 iFrefDkDgdGkIdfeEfke 24 
                 +F+++D DgdG+I++ E+++
  KOO23533.1 109 VFDILDADGDGRITRAEYIA 128
                 7****************986 PP

  == domain 2  score: 18.8 bits;  conditional E-value: 6.1e-07
                 HHHHTTTSSSEEEHHHHH CS
   EF-hand_1   6 FrefDkDgdGkIdfeEfk 23 
                 F+++D+++dG+I++eEf 
  KOO23533.1 130 FDIIDTNHDGFISREEFG 147
                 99***************6 PP

  == domain 3  score: 14.1 bits;  conditional E-value: 1.9e-05
                 HHHHTTTSSSEEEHHHHHH CS
   EF-hand_1   6 FrefDkDgdGkIdfeEfke 24 
                 F+++D+DgdG++++ E+ +
  KOO23533.1 154 FKLLDTDGDGHLTRAEYEA 172
                 99**************866 PP

  == domain 4  score: 18.3 bits;  conditional E-value: 8.9e-07
                 HHHHHHHTTTSSSEEEHHHH CS
   EF-hand_1   3 keiFrefDkDgdGkIdfeEf 22 
                 +  F++fD DgdG+I++ E+
  KOO23533.1 171 EAGFDLFDNDGDGFITRAEL 190
                 667****************8 PP

  == domain 5  score: 17.7 bits;  conditional E-value: 1.4e-06
                 HHHHHTTTSSSEEEHHHHHHHH CS
   EF-hand_1   5 iFrefDkDgdGkIdfeEfkell 26 
                  F+ +D DgdG I++eE+++++
  KOO23533.1 199 SFDALDADGDGEITKEEYMKAF 220
                 699***************9875 PP

  == domain 6  score: 18.7 bits;  conditional E-value: 6.7e-07
                 HHHHHHHHHTTTSSSEEEHHHH CS
   EF-hand_1   1 elkeiFrefDkDgdGkIdfeEf 22 
                 e  ++F+++D D+dG+I+  Ef
  KOO23533.1 215 EYMKAFDMIDLDRDGYITVLEF 236
                 5689***************999 PP

  == domain 7  score: 18.3 bits;  conditional E-value: 9.2e-07
                 HHHHTTTSSSEEEHHHHHHHHH CS
   EF-hand_1   6 FrefDkDgdGkIdfeEfkellk 27 
                 F+++DkDgdGk++++E+ e +k
  KOO23533.1 244 FALIDKDGDGKLTRKEWEEGFK 265
                 899**************98875 PP

  == domain 8  score: 25.8 bits;  conditional E-value: 3.6e-09
                 HHHHHHHHHTTTSSSEEEHHHHHH CS
   EF-hand_1   1 elkeiFrefDkDgdGkIdfeEfke 24 
                 e++e F++fD DgdGkI++ Ef+ 
  KOO23533.1 259 EWEEGFKHFDLDGDGKITKAEFLI 282
                 78999*****************75 PP

  == domain 9  score: 19.9 bits;  conditional E-value: 2.7e-07
                 HHHHHTTTSSSEEEHHHHHHH CS
   EF-hand_1   5 iFrefDkDgdGkIdfeEfkel 25 
                 +F+++D DgdG+I+f+E+++ 
  KOO23533.1 289 VFELLDADGDGRITFKEYQKG 309
                 7****************9875 PP

  == domain 10  score: 18.5 bits;  conditional E-value: 7.6e-07
                 HHHHHHHHTTTSSSEEEHHHHHHHH CS
   EF-hand_1   2 lkeiFrefDkDgdGkIdfeEfkell 26 
                  ++ F+++D D+dG+++++Ef + +
  KOO23533.1 306 YQKGFDILDADKDGFLSRKEFGSGI 330
                 6788*****************9876 PP

  == domain 11  score: 14.7 bits;  conditional E-value: 1.2e-05
                 HHHHHTTTSSSEEEHHHH CS
   EF-hand_1   5 iFrefDkDgdGkIdfeEf 22 
                 iF+++D+D+dGk++++E+
  KOO23533.1 334 IFAKLDTDRDGKLSRKEY 351
                 8***************96 PP

  == domain 12  score: 15.7 bits;  conditional E-value: 5.9e-06
                 HHHHHHHHTTTSSSEEEHHHH CS
   EF-hand_1   2 lkeiFrefDkDgdGkIdfeEf 22 
                  +  F+++D D+dG Id+ Ef
  KOO23533.1 351 YDAGFKLMDIDRDGMIDKREF 371
                 6778****************9 PP

  == domain 13  score: 20.1 bits;  conditional E-value: 2.5e-07
                 HHHHHTTTSSSEEEHHHHHH CS
   EF-hand_1   5 iFrefDkDgdGkIdfeEfke 24 
                 +F+++D+DgdG+I++eEf +
  KOO23533.1 380 LFSLLDVDGDGRITREEFNA 399
                 69****************75 PP

  == domain 14  score: 18.4 bits;  conditional E-value: 8.1e-07
                 HHHHTTTSSSEEEHHHH CS
   EF-hand_1   6 FrefDkDgdGkIdfeEf 22 
                 F+++D DgdG+I++eEf
  KOO23533.1 401 FNVLDADGDGHITREEF 417
                 99*************** PP

  == domain 15  score: 20.3 bits;  conditional E-value: 2e-07
                 HHHHTTTSSSEEEHHHHHHH CS
   EF-hand_1   6 FrefDkDgdGkIdfeEfkel 25 
                 F ++DkDgdG+I+++E+ ++
  KOO23533.1 425 FHLIDKDGDGYISRQEWHSV 444
                 889*************9876 PP

  == domain 16  score: 21.3 bits;  conditional E-value: 1e-07
                 HHHHHHHHHTTTSSSEEEHHHHHH CS
   EF-hand_1   1 elkeiFrefDkDgdGkIdfeEfke 24 
                 e+  +F+ fD D+dG+I+ +Ef +
  KOO23533.1 440 EWHSVFDYFDEDHDGYITAKEFNT 463
                 67899*****************76 PP

  == domain 17  score: 16.4 bits;  conditional E-value: 3.6e-06
                 HHHHHTTTSSSEEEHHHHH CS
   EF-hand_1   5 iFrefDkDgdGkIdfeEfk 23 
                 +F+ +D DgdG+I++eE+ 
  KOO23533.1 470 LFSTLDADGDGTITREEYN 488
                 699**************85 PP

  == domain 18  score: 17.6 bits;  conditional E-value: 1.5e-06
                 HHHHTTTSSSEEEHHHHHHH CS
   EF-hand_1   6 FrefDkDgdGkIdfeEfkel 25 
                 F+++D++++G+++ eEf+ +
  KOO23533.1 491 FDIMDTNQNGYLSQEEFQCA 510
                 99***************976 PP

  == domain 19  score: 15.5 bits;  conditional E-value: 7.3e-06
                 HHHHHTTTSSSEEEHHHHHH CS
   EF-hand_1   5 iFrefDkDgdGkIdfeEfke 24 
                 +F+ +D+DgdGk+++ E+ +
  KOO23533.1 511 FFKTLDVDGDGKLSRAEYEA 530
                 7***************9865 PP

  == domain 20  score: 8.8 bits;  conditional E-value: 0.00096
                 HHHHHHHTTTSSSEEEHHHHHHH CS
   EF-hand_1   3 keiFrefDkDgdGkIdfeEfkel 25 
                 +  F+++D D+dG++++ Ef+++
  KOO23533.1 529 EAGFDIIDYDRDGFLTKWEFMAA 551
                 6679************9888765 PP

  == domain 21  score: 10.7 bits;  conditional E-value: 0.00025
                 HHHHHTTTSSSEEEHHHH CS
   EF-hand_1   5 iFrefDkDgdGkIdfeEf 22 
                 +F+++D+D dG+I++ E+
  KOO23533.1 557 LFDVLDVDMDGRITRAEY 574
                 69**************97 PP

  == domain 22  score: 17.0 bits;  conditional E-value: 2.3e-06
                 HHHHHHTTTSSSEEEHHHHHH CS
   EF-hand_1   4 eiFrefDkDgdGkIdfeEfke 24 
                   F+++D D+dGk+++eEf +
  KOO23533.1 576 AGFDIIDGDKDGKLTKEEFGA 596
                 669****************87 PP

  == domain 23  score: 19.2 bits;  conditional E-value: 4.7e-07
                 HHHHHHTTTSSSEEEHHHHHH CS
   EF-hand_1   4 eiFrefDkDgdGkIdfeEfke 24 
                  iF+++D DgdG++++eE+ +
  KOO23533.1 600 AIFDKIDLDGDGFLTREEWEA 620
                 69****************976 PP

  == domain 24  score: 22.7 bits;  conditional E-value: 3.5e-08
                 HHHHHHHHHTTTSSSEEEHHHHHH CS
   EF-hand_1   1 elkeiFrefDkDgdGkIdfeEfke 24 
                 e++  F++fD D+dG+I+++E+ +
  KOO23533.1 617 EWEAGFDMFDLDHDGYITRDELHS 640
                 67888****************976 PP

  == domain 25  score: 17.9 bits;  conditional E-value: 1.2e-06
                 HHHHHHTTTSSSEEEHHHHHHHH CS
   EF-hand_1   4 eiFrefDkDgdGkIdfeEfkell 26 
                  +F+ +D DgdG I++eE+ +++
  KOO23533.1 646 FAFDSLDADGDGMITREEYEAAF 668
                 69****************99987 PP

  == domain 26  score: 20.2 bits;  conditional E-value: 2.2e-07
                 HHHHHHHHHTTTSSSEEEHHHHH CS
   EF-hand_1   1 elkeiFrefDkDgdGkIdfeEfk 23 
                 e + +Fr++D+++dGk+++ Ef 
  KOO23533.1 663 EYEAAFRIMDRNRDGKLSRAEFN 685
                 5789******************5 PP

  == domain 27  score: 19.8 bits;  conditional E-value: 2.9e-07
                 HHHHTTTSSSEEEHHHHHHH CS
   EF-hand_1   6 FrefDkDgdGkIdfeEfkel 25 
                 F+ +D DgdG+I+f+E+k+ 
  KOO23533.1 692 FKRLDLDGDGFITFDEYKKG 711
                 999*************9976 PP

  == domain 28  score: 22.6 bits;  conditional E-value: 3.6e-08
                 HHHHHHHHHTTTSSSEEEHHHHH CS
   EF-hand_1   1 elkeiFrefDkDgdGkIdfeEfk 23 
                 e k+ F+++D+++dGk+++eEf+
  KOO23533.1 707 EYKKGFDMMDTNKDGKLSKEEFM 729
                 67899*****************8 PP

>> EF-hand_6  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.1   0.1   2.7e-05     0.034       5      23 ..     109     127 ..     108     130 .. 0.89
   2 !   16.6   0.4   4.1e-06    0.0053       6      23 ..     130     147 ..     125     148 .. 0.90
   3 !   13.9   0.0   2.9e-05     0.037       6      21 ..     154     169 ..     154     173 .. 0.93
   4 !   19.8   0.7   3.8e-07   0.00049       6      23 ..     174     191 ..     169     195 .. 0.88
   5 !   14.7   0.2   1.7e-05     0.021       6      24 ..     200     218 ..     197     219 .. 0.91
   6 !   20.7   0.2     2e-07   0.00025       2      23 ..     216     237 ..     215     239 .. 0.90
   7 !   15.2   0.1   1.1e-05     0.015       6      22 ..     244     260 ..     244     263 .. 0.92
   8 !   22.5   0.4   5.4e-08   6.9e-05       2      25 ..     260     283 ..     259     288 .. 0.88
   9 !   15.7   0.3     8e-06      0.01       5      24 ..     289     308 ..     285     310 .. 0.90
  10 !   16.5   0.4   4.3e-06    0.0055       5      27 ..     309     331 ..     306     333 .. 0.88
  11 !   12.4   0.1     9e-05      0.12       5      21 ..     334     350 ..     333     354 .. 0.93
  12 !   14.5   0.4   1.9e-05     0.025       6      23 ..     355     372 ..     350     377 .. 0.88
  13 !   19.6   0.1   4.6e-07   0.00059       5      26 ..     380     401 ..     379     402 .. 0.91
  14 !   16.6   0.2   4.2e-06    0.0054       4      24 ..     399     419 ..     397     420 .. 0.87
  15 !   16.7   0.0     4e-06    0.0051       6      23 ..     425     442 ..     425     444 .. 0.92
  16 !   23.5   0.6   2.5e-08   3.3e-05       1      23 [.     440     462 ..     440     466 .. 0.91
  17 !   13.4   0.1   4.4e-05     0.057       5      21 ..     470     486 ..     469     490 .. 0.91
  18 !   17.8   0.1   1.7e-06    0.0022       4      26 ..     489     511 ..     486     512 .. 0.89
  19 !   14.0   0.1   2.9e-05     0.037       5      21 ..     511     527 ..     510     531 .. 0.91
  20 !   16.9   0.2   3.2e-06    0.0041       6      25 ..     532     551 ..     527     554 .. 0.89
  21 !    9.7   0.0   0.00069      0.89       5      21 ..     557     573 ..     556     577 .. 0.91
  22 !   16.4   0.5   4.6e-06    0.0059       6      24 ..     578     596 ..     574     597 .. 0.91
  23 !   17.5   0.4   2.1e-06    0.0027       4      23 ..     600     619 ..     598     621 .. 0.91
  24 !   21.8   0.3   8.8e-08   0.00011       2      24 ..     618     640 ..     617     643 .. 0.87
  25 !   16.5   0.2   4.5e-06    0.0057       5      27 ..     647     669 ..     645     669 .. 0.93
  26 !   18.5   0.0     1e-06    0.0013       2      23 ..     664     685 ..     663     687 .. 0.89
  27 !   14.7   1.0   1.7e-05     0.022       6      23 ..     692     709 ..     692     711 .. 0.92
  28 !   18.6   0.2   9.1e-07    0.0012       5      23 ..     711     729 ..     708     731 .. 0.89

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 2.7e-05
   EF-hand_6   5 aFklfDkdgdGkidaeElr 23 
                 +F+++D dgdG i+++E +
  KOO23533.1 109 VFDILDADGDGRITRAEYI 127
                 7**************9965 PP

  == domain 2  score: 16.6 bits;  conditional E-value: 4.1e-06
   EF-hand_6   6 FklfDkdgdGkidaeElr 23 
                 F+++D+++dG+i++eE+ 
  KOO23533.1 130 FDIIDTNHDGFISREEFG 147
                 9***************96 PP

  == domain 3  score: 13.9 bits;  conditional E-value: 2.9e-05
   EF-hand_6   6 FklfDkdgdGkidaeE 21 
                 Fkl+D+dgdG+++++E
  KOO23533.1 154 FKLLDTDGDGHLTRAE 169
                 9*************99 PP

  == domain 4  score: 19.8 bits;  conditional E-value: 3.8e-07
   EF-hand_6   6 FklfDkdgdGkidaeElr 23 
                 F+lfD+dgdG+i+++El 
  KOO23533.1 174 FDLFDNDGDGFITRAELH 191
                 ****************95 PP

  == domain 5  score: 14.7 bits;  conditional E-value: 1.7e-05
   EF-hand_6   6 FklfDkdgdGkidaeElrk 24 
                 F+++D dgdG+i++eE +k
  KOO23533.1 200 FDALDADGDGEITKEEYMK 218
                 9***************876 PP

  == domain 6  score: 20.7 bits;  conditional E-value: 2e-07
   EF-hand_6   2 lreaFklfDkdgdGkidaeElr 23 
                  ++aF+++D d+dG+i+  E+ 
  KOO23533.1 216 YMKAFDMIDLDRDGYITVLEFN 237
                 579*****************96 PP

  == domain 7  score: 15.2 bits;  conditional E-value: 1.1e-05
   EF-hand_6   6 FklfDkdgdGkidaeEl 22 
                 F l+DkdgdGk++++E+
  KOO23533.1 244 FALIDKDGDGKLTRKEW 260
                 99*************97 PP

  == domain 8  score: 22.5 bits;  conditional E-value: 5.4e-08
   EF-hand_6   2 lreaFklfDkdgdGkidaeElrka 25 
                 ++e Fk+fD dgdGki+++E+  +
  KOO23533.1 260 WEEGFKHFDLDGDGKITKAEFLIV 283
                 7788*****************865 PP

  == domain 9  score: 15.7 bits;  conditional E-value: 8e-06
   EF-hand_6   5 aFklfDkdgdGkidaeElrk 24 
                 +F+l+D dgdG i+++E +k
  KOO23533.1 289 VFELLDADGDGRITFKEYQK 308
                 8****************887 PP

  == domain 10  score: 16.5 bits;  conditional E-value: 4.3e-06
   EF-hand_6   5 aFklfDkdgdGkidaeElrkalr 27 
                  F+++D d+dG+++++E+ + ++
  KOO23533.1 309 GFDILDADKDGFLSRKEFGSGIS 331
                 5*****************98765 PP

  == domain 11  score: 12.4 bits;  conditional E-value: 9e-05
   EF-hand_6   5 aFklfDkdgdGkidaeE 21 
                 +F ++D+d+dGk++++E
  KOO23533.1 334 IFAKLDTDRDGKLSRKE 350
                 7**************99 PP

  == domain 12  score: 14.5 bits;  conditional E-value: 1.9e-05
   EF-hand_6   6 FklfDkdgdGkidaeElr 23 
                 Fkl+D d+dG id+ E+ 
  KOO23533.1 355 FKLMDIDRDGMIDKREFN 372
                 ****************97 PP

  == domain 13  score: 19.6 bits;  conditional E-value: 4.6e-07
   EF-hand_6   5 aFklfDkdgdGkidaeElrkal 26 
                 +F l+D+dgdG i++eE+ + +
  KOO23533.1 380 LFSLLDVDGDGRITREEFNAGF 401
                 7*****************9865 PP

  == domain 14  score: 16.6 bits;  conditional E-value: 4.2e-06
   EF-hand_6   4 eaFklfDkdgdGkidaeElrk 24 
                 + F+ +D dgdG+i++eE+  
  KOO23533.1 399 AGFNVLDADGDGHITREEFNC 419
                 66*****************75 PP

  == domain 15  score: 16.7 bits;  conditional E-value: 4e-06
   EF-hand_6   6 FklfDkdgdGkidaeElr 23 
                 F+l+DkdgdG+i+++E+ 
  KOO23533.1 425 FHLIDKDGDGYISRQEWH 442
                 99**************86 PP

  == domain 16  score: 23.5 bits;  conditional E-value: 2.5e-08
   EF-hand_6   1 elreaFklfDkdgdGkidaeElr 23 
                 e++++F++fD d+dG+i+a+E+ 
  KOO23533.1 440 EWHSVFDYFDEDHDGYITAKEFN 462
                 6899*****************97 PP

  == domain 17  score: 13.4 bits;  conditional E-value: 4.4e-05
   EF-hand_6   5 aFklfDkdgdGkidaeE 21 
                 +F  +D dgdG+i++eE
  KOO23533.1 470 LFSTLDADGDGTITREE 486
                 79**************9 PP

  == domain 18  score: 17.8 bits;  conditional E-value: 1.7e-06
   EF-hand_6   4 eaFklfDkdgdGkidaeElrkal 26 
                 + F+++D++ +G++++eE++ a+
  KOO23533.1 489 AGFDIMDTNQNGYLSQEEFQCAF 511
                 56******************986 PP

  == domain 19  score: 14.0 bits;  conditional E-value: 2.9e-05
   EF-hand_6   5 aFklfDkdgdGkidaeE 21 
                 +Fk +D+dgdGk++++E
  KOO23533.1 511 FFKTLDVDGDGKLSRAE 527
                 8*************999 PP

  == domain 20  score: 16.9 bits;  conditional E-value: 3.2e-06
   EF-hand_6   6 FklfDkdgdGkidaeElrka 25 
                 F+++D+d+dG++++ E+++a
  KOO23533.1 532 FDIIDYDRDGFLTKWEFMAA 551
                 *****************987 PP

  == domain 21  score: 9.7 bits;  conditional E-value: 0.00069
   EF-hand_6   5 aFklfDkdgdGkidaeE 21 
                 +F+ +D+d dG i+++E
  KOO23533.1 557 LFDVLDVDMDGRITRAE 573
                 7**************99 PP

  == domain 22  score: 16.4 bits;  conditional E-value: 4.6e-06
   EF-hand_6   6 FklfDkdgdGkidaeElrk 24 
                 F+++D d+dGk+++eE+ +
  KOO23533.1 578 FDIIDGDKDGKLTKEEFGA 596
                 9****************87 PP

  == domain 23  score: 17.5 bits;  conditional E-value: 2.1e-06
   EF-hand_6   4 eaFklfDkdgdGkidaeElr 23 
                 ++F+++D dgdG++++eE+ 
  KOO23533.1 600 AIFDKIDLDGDGFLTREEWE 619
                 69****************86 PP

  == domain 24  score: 21.8 bits;  conditional E-value: 8.8e-08
   EF-hand_6   2 lreaFklfDkdgdGkidaeElrk 24 
                 +++ F++fD d+dG+i+++El +
  KOO23533.1 618 WEAGFDMFDLDHDGYITRDELHS 640
                 5667****************976 PP

  == domain 25  score: 16.5 bits;  conditional E-value: 4.5e-06
   EF-hand_6   5 aFklfDkdgdGkidaeElrkalr 27 
                 aF+ +D dgdG i++eE  +a+r
  KOO23533.1 647 AFDSLDADGDGMITREEYEAAFR 669
                 9****************999987 PP

  == domain 26  score: 18.5 bits;  conditional E-value: 1e-06
   EF-hand_6   2 lreaFklfDkdgdGkidaeElr 23 
                  ++aF+++D+++dGk++++E+ 
  KOO23533.1 664 YEAAFRIMDRNRDGKLSRAEFN 685
                 578*****************97 PP

  == domain 27  score: 14.7 bits;  conditional E-value: 1.7e-05
   EF-hand_6   6 FklfDkdgdGkidaeElr 23 
                 Fk +D dgdG+i+++E +
  KOO23533.1 692 FKRLDLDGDGFITFDEYK 709
                 9**************976 PP

  == domain 28  score: 18.6 bits;  conditional E-value: 9.1e-07
   EF-hand_6   5 aFklfDkdgdGkidaeElr 23 
                  F+++D+++dGk+++eE++
  KOO23533.1 711 GFDMMDTNKDGKLSKEEFM 729
                 5*****************7 PP

>> EF-hand_7  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.2   0.0   0.00014      0.18      49      67 ..     109     127 ..     103     130 .. 0.73
   2 !   12.6   0.2   0.00011      0.14      50      66 ..     130     146 ..     128     149 .. 0.60
   3 !   12.4   0.0   0.00013      0.17       8      25 ..     154     171 ..     150     173 .. 0.73
   4 !   36.2   5.2   4.9e-12   6.3e-09       6      67 ..     171     237 ..     170     240 .. 0.84
   5 !   39.9   1.6   3.4e-13   4.4e-10       5      67 ..     217     281 ..     215     285 .. 0.90
   6 !   34.2   1.4     2e-11   2.6e-08       8      68 ..     244     308 ..     239     310 .. 0.90
   7 !   31.8   3.9   1.1e-10   1.5e-07       8      67 ..     310     372 ..     307     376 .. 0.87
   8 !   14.7   0.1   2.4e-05     0.031      49      67 ..     380     398 ..     378     401 .. 0.70
   9 !   12.8   0.1   9.9e-05      0.13       8      27 ..     425     444 ..     421     446 .. 0.86
  10 !   36.7   3.6   3.3e-12   4.2e-09       4      69 ..     441     510 ..     439     511 .. 0.85
  11 !   35.4   2.1   8.6e-12   1.1e-08       8      69 ..     491     551 ..     487     553 .. 0.91
  12 !   36.1   8.6   5.3e-12   6.8e-09       7      67 ..     576     639 ..     555     643 .. 0.92
  13 !   38.0   4.1   1.4e-12   1.7e-09       5      68 ..     645     710 ..     644     712 .. 0.88
  14 !   15.0   0.2     2e-05     0.025      50      67 ..     712     729 ..     709     731 .. 0.68

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 0.00014
   EF-hand_7  49 lfkefDtdkdGvisfdEFl 67 
                 +f+ +D d+dG+i++ E+ 
  KOO23533.1 109 VFDILDADGDGRITRAEYI 127
                 5777777777777777776 PP

  == domain 2  score: 12.6 bits;  conditional E-value: 0.00011
   EF-hand_7  50 fkefDtdkdGvisfdEF 66 
                 f+ +Dt++dG is++EF
  KOO23533.1 130 FDIIDTNHDGFISREEF 146
                 45556666666666665 PP

  == domain 3  score: 12.4 bits;  conditional E-value: 0.00013
   EF-hand_7   8 FkelDtdgdgyldkeell 25 
                 Fk+lDtdgdg+l+++e++
  KOO23533.1 154 FKLLDTDGDGHLTRAEYE 171
                 777888888888777754 PP

  == domain 4  score: 36.2 bits;  conditional E-value: 4.9e-12
   EF-hand_7   6 ea.FkelDtdgdgyldkeellr........llrkifqga...gegsklsdeelellfkefDtdkdGvisfdEFl 67 
                 ea F+++D+dgdg+++++el+                 a   + + ++++ee  + f+++D+d+dG+i+  EF 
  KOO23533.1 171 EAgFDLFDNDGDGFITRAELHGhvvpkfsfD-------AldaDGDGEITKEEYMKAFDMIDLDRDGYITVLEFN 237
                 566****************887755555330.......2555*******************************7 PP

  == domain 5  score: 39.9 bits;  conditional E-value: 3.4e-13
   EF-hand_7   5 keaFkelDtdgdgyldkeellr.......llrkifqgagegsklsdeelellfkefDtdkdGvisfdEFl 67 
                 + aF+++D d+dgy+++ e+ +       l+ k     + + kl+++e e+ fk fD+d+dG+i+  EFl
  KOO23533.1 217 MKAFDMIDLDRDGYITVLEFNCvsclpfaLIDK-----DGDGKLTRKEWEEGFKHFDLDGDGKITKAEFL 281
                 678******************988877765555.....9999***************************8 PP

  == domain 6  score: 34.2 bits;  conditional E-value: 2e-11
   EF-hand_7   8 FkelDtdgdgyldkeellrllrkifqgagegsklsdee......lellfkefDtdkdGvisfdEFlk 68 
                 F ++D+dgdg+l++ e ++ +++++   + + k+++ e         +f+ +D d+dG+i+f E++k
  KOO23533.1 244 FALIDKDGDGKLTRKEWEEGFKHFDL--DGDGKITKAEflivsrAGFVFELLDADGDGRITFKEYQK 308
                 99********************9988..999999998888887778*******************98 PP

  == domain 7  score: 31.8 bits;  conditional E-value: 1.1e-10
   EF-hand_7   8 FkelDtdgdgyldkeellrllrkifqga...gegsklsdeelellfkefDtdkdGvisfdEFl 67 
                 F+ lD d+dg+l++ e+ + +  ++ ++   +++ kls++e ++ fk +D d+dG i+  EF 
  KOO23533.1 310 FDILDADKDGFLSRKEFGSGISGLIFAKldtDRDGKLSRKEYDAGFKLMDIDRDGMIDKREFN 372
                 9******************555544333566******************************96 PP

  == domain 8  score: 14.7 bits;  conditional E-value: 2.4e-05
   EF-hand_7  49 lfkefDtdkdGvisfdEFl 67 
                 lf  +D d+dG+i+++EF 
  KOO23533.1 380 LFSLLDVDGDGRITREEFN 398
                 5677777777777777776 PP

  == domain 9  score: 12.8 bits;  conditional E-value: 9.9e-05
   EF-hand_7   8 FkelDtdgdgyldkeellrl 27 
                 F ++D+dgdgy++++e +++
  KOO23533.1 425 FHLIDKDGDGYISRQEWHSV 444
                 99999999999999998876 PP

  == domain 10  score: 36.7 bits;  conditional E-value: 3.3e-12
   EF-hand_7   4 lkeaFkelDtdgdgyldkeellrllrkifqga.......gegsklsdeelellfkefDtdkdGvisfdEFlkl 69 
                  + +F+ +D d+dgy++  e+  l +     +       + +  +++ee  + f+ +Dt+++G++s +EF+ +
  KOO23533.1 441 WHSVFDYFDEDHDGYITAKEFNTLAHPG---FlfstldaDGDGTITREEYNAGFDIMDTNQNGYLSQEEFQCA 510
                 5789******************855543...233466779999***************************987 PP

  == domain 11  score: 35.4 bits;  conditional E-value: 8.6e-12
   EF-hand_7   8 FkelDtdgdgyldkeellrllrkifqgagegsklsdeelellfkefDtdkdGvisfdEFlkl 69 
                 F+ +Dt+++gyl++ee+++++ k  +  + + kls+ e e+ f+ +D d+dG ++  EF+++
  KOO23533.1 491 FDIMDTNQNGYLSQEEFQCAFFKTLDV-DGDGKLSRAEYEAGFDIIDYDRDGFLTKWEFMAA 551
                 9******************88887777.999999*************************987 PP

  == domain 12  score: 36.1 bits;  conditional E-value: 5.3e-12
   EF-hand_7   7 a.FkelDtdgdgyldkeellrllrkifqga...gegsklsdeelellfkefDtdkdGvisfdEFl 67 
                 a F+ +D d+dg+l+kee+  + ++if+++   g g+  ++ee e+ f++fD+d+dG+i++dE++
  KOO23533.1 576 AgFDIIDGDKDGKLTKEEFGAVSHAIFDKIdldGDGFL-TREEWEAGFDMFDLDHDGYITRDELH 639
                 559*****************************666666.99**********************87 PP

  == domain 13  score: 38.0 bits;  conditional E-value: 1.4e-12
   EF-hand_7   5 keaFkelDtdgdgyldkeellrllrkifqgagegsklsdee....lellfkefDtdkdGvisfdEFlk 68 
                 k aF++lD dgdg++++ee++ ++r+++    ++ kls+ e      l fk +D+d+dG i+fdE++k
  KOO23533.1 645 KFAFDSLDADGDGMITREEYEAAFRIMDR--NRDGKLSRAEfnlaSALPFKRLDLDGDGFITFDEYKK 710
                 579******************99998766..899999999966544588*****************87 PP

  == domain 14  score: 15.0 bits;  conditional E-value: 2e-05
   EF-hand_7  50 fkefDtdkdGvisfdEFl 67 
                 f+++Dt+kdG++s +EF+
  KOO23533.1 712 FDMMDTNKDGKLSKEEFM 729
                 667777777777777774 PP

>> EF-hand_8  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.0   0.1   0.00023      0.29      31      51 ..     109     129 ..     102     132 .. 0.88
   2 !    8.3   0.3    0.0015         2      32      48 ..     130     146 ..     129     147 .. 0.96
   3 !    9.0   0.0   0.00099       1.3      32      48 ..     154     170 ..     149     172 .. 0.92
   4 !    7.0   0.3    0.0039         5      32      50 ..     174     192 ..     171     195 .. 0.92
   5 !   12.1   0.3   0.00011      0.14      32      52 ..     200     220 ..     200     222 .. 0.92
   6 !    6.7   0.3    0.0049       6.2      32      48 ..     220     236 ..     219     237 .. 0.91
   7 ?    3.9   0.1     0.038        48      33      47 ..     245     259 ..     244     260 .. 0.87
   8 !   16.8   0.1   3.7e-06    0.0047      32      49 ..     264     281 ..     261     285 .. 0.94
   9 !   10.2   0.1   0.00041      0.52      31      48 ..     289     306 ..     288     308 .. 0.91
  10 ?    5.0   0.8     0.017        22      32      48 ..     310     326 ..     310     327 .. 0.96
  11 !    9.8   0.0   0.00056      0.72      31      48 ..     334     351 ..     333     352 .. 0.92
  12 !   11.0   0.6   0.00023      0.29      32      48 ..     355     371 ..     352     372 .. 0.96
  13 !   11.8   0.1   0.00013      0.16      31      48 ..     380     397 ..     379     400 .. 0.95
  14 !   11.8   0.1   0.00013      0.17      32      48 ..     401     417 ..     399     418 .. 0.97
  15 !    6.3   0.1    0.0066       8.5      32      47 ..     425     440 ..     425     443 .. 0.84
  16 !   17.1   0.2   2.8e-06    0.0036      26      48 ..     439     461 ..     437     465 .. 0.90
  17 !   11.6   0.1   0.00015      0.19      31      48 ..     470     487 ..     469     490 .. 0.94
  18 !   14.1   0.1   2.4e-05      0.03      32      48 ..     491     507 ..     491     513 .. 0.90
  19 !    7.0   0.0    0.0041       5.3      32      48 ..     512     528 ..     509     530 .. 0.91
  20 ?    3.7   0.2     0.043        56      32      51 ..     532     551 ..     529     553 .. 0.92
  21 ?    3.5   0.1      0.05        64      31      48 ..     557     574 ..     556     577 .. 0.92
  22 !    8.0   0.5    0.0019       2.5      32      48 ..     578     594 ..     575     598 .. 0.94
  23 !    9.2   0.4   0.00084       1.1      29      47 ..     599     617 ..     596     618 .. 0.92
  24 !   12.3   0.2     9e-05      0.12      32      50 ..     622     640 ..     619     642 .. 0.91
  25 !    8.7   0.2    0.0012       1.6      32      48 ..     648     664 ..     646     667 .. 0.91
  26 !   13.7   0.0   3.2e-05     0.041      27      48 ..     663     684 ..     662     685 .. 0.92
  27 !   10.7   1.3   0.00028      0.36      32      51 ..     692     711 ..     692     714 .. 0.89
  28 !   14.6   0.4   1.7e-05     0.022      32      49 ..     712     729 ..     711     730 .. 0.95

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00023
   EF-hand_8  31 lfrefDtdgdGkisfeEFcvl 51 
                 +f+ +D dgdG+i+  E+++ 
  KOO23533.1 109 VFDILDADGDGRITRAEYIAG 129
                 79***************9975 PP

  == domain 2  score: 8.3 bits;  conditional E-value: 0.0015
   EF-hand_8  32 frefDtdgdGkisfeEF 48 
                 f+ +Dt++dG is eEF
  KOO23533.1 130 FDIIDTNHDGFISREEF 146
                 899*************9 PP

  == domain 3  score: 9.0 bits;  conditional E-value: 0.00099
   EF-hand_8  32 frefDtdgdGkisfeEF 48 
                 f+++DtdgdG+++  E+
  KOO23533.1 154 FKLLDTDGDGHLTRAEY 170
                 99***********9986 PP

  == domain 4  score: 7.0 bits;  conditional E-value: 0.0039
   EF-hand_8  32 frefDtdgdGkisfeEFcv 50 
                 f++fD dgdG i+  E + 
  KOO23533.1 174 FDLFDNDGDGFITRAELHG 192
                 89*************9985 PP

  == domain 5  score: 12.1 bits;  conditional E-value: 0.00011
   EF-hand_8  32 frefDtdgdGkisfeEFcvll 52 
                 f+++D dgdG i++eE++  +
  KOO23533.1 200 FDALDADGDGEITKEEYMKAF 220
                 89****************987 PP

  == domain 6  score: 6.7 bits;  conditional E-value: 0.0049
   EF-hand_8  32 frefDtdgdGkisfeEF 48 
                 f+ +D+d+dG+i+  EF
  KOO23533.1 220 FDMIDLDRDGYITVLEF 236
                 7889********99888 PP

  == domain 7  score: 3.9 bits;  conditional E-value: 0.038
   EF-hand_8  33 refDtdgdGkisfeE 47 
                  ++D dgdGk++ +E
  KOO23533.1 245 ALIDKDGDGKLTRKE 259
                 579********9987 PP

  == domain 8  score: 16.8 bits;  conditional E-value: 3.7e-06
   EF-hand_8  32 frefDtdgdGkisfeEFc 49 
                 f++fD+dgdGki++ EF+
  KOO23533.1 264 FKHFDLDGDGKITKAEFL 281
                 99***************7 PP

  == domain 9  score: 10.2 bits;  conditional E-value: 0.00041
   EF-hand_8  31 lfrefDtdgdGkisfeEF 48 
                 +f ++D dgdG+i+f+E+
  KOO23533.1 289 VFELLDADGDGRITFKEY 306
                 58899***********97 PP

  == domain 10  score: 5.0 bits;  conditional E-value: 0.017
   EF-hand_8  32 frefDtdgdGkisfeEF 48 
                 f+ +D d+dG +s +EF
  KOO23533.1 310 FDILDADKDGFLSRKEF 326
                 8899************9 PP

  == domain 11  score: 9.8 bits;  conditional E-value: 0.00056
   EF-hand_8  31 lfrefDtdgdGkisfeEF 48 
                 +f ++Dtd+dGk+s +E+
  KOO23533.1 334 IFAKLDTDRDGKLSRKEY 351
                 7889***********996 PP

  == domain 12  score: 11.0 bits;  conditional E-value: 0.00023
   EF-hand_8  32 frefDtdgdGkisfeEF 48 
                 f+++D+d+dG+i++ EF
  KOO23533.1 355 FKLMDIDRDGMIDKREF 371
                 99**************9 PP

  == domain 13  score: 11.8 bits;  conditional E-value: 0.00013
   EF-hand_8  31 lfrefDtdgdGkisfeEF 48 
                 lf+++D dgdG+i+ eEF
  KOO23533.1 380 LFSLLDVDGDGRITREEF 397
                 9****************9 PP

  == domain 14  score: 11.8 bits;  conditional E-value: 0.00013
   EF-hand_8  32 frefDtdgdGkisfeEF 48 
                 f+ +D dgdG+i+ eEF
  KOO23533.1 401 FNVLDADGDGHITREEF 417
                 899*************9 PP

  == domain 15  score: 6.3 bits;  conditional E-value: 0.0066
   EF-hand_8  32 frefDtdgdGkisfeE 47 
                 f ++D dgdG+is  E
  KOO23533.1 425 FHLIDKDGDGYISRQE 440
                 5679*********887 PP

  == domain 16  score: 17.1 bits;  conditional E-value: 2.8e-06
   EF-hand_8  26 eevdilfrefDtdgdGkisfeEF 48 
                 +e +++f++fD+d+dG+i+ +EF
  KOO23533.1 439 QEWHSVFDYFDEDHDGYITAKEF 461
                 78899*****************9 PP

  == domain 17  score: 11.6 bits;  conditional E-value: 0.00015
   EF-hand_8  31 lfrefDtdgdGkisfeEF 48 
                 lf+++D dgdG+i+ eE+
  KOO23533.1 470 LFSTLDADGDGTITREEY 487
                 9***************97 PP

  == domain 18  score: 14.1 bits;  conditional E-value: 2.4e-05
   EF-hand_8  32 frefDtdgdGkisfeEF 48 
                 f+ +Dt+++G++s+eEF
  KOO23533.1 491 FDIMDTNQNGYLSQEEF 507
                 899************** PP

  == domain 19  score: 7.0 bits;  conditional E-value: 0.0041
   EF-hand_8  32 frefDtdgdGkisfeEF 48 
                 f+++D dgdGk+s  E+
  KOO23533.1 512 FKTLDVDGDGKLSRAEY 528
                 99***********9996 PP

  == domain 20  score: 3.7 bits;  conditional E-value: 0.043
   EF-hand_8  32 frefDtdgdGkisfeEFcvl 51 
                 f+ +D d+dG +++ EF++ 
  KOO23533.1 532 FDIIDYDRDGFLTKWEFMAA 551
                 899**************985 PP

  == domain 21  score: 3.5 bits;  conditional E-value: 0.05
   EF-hand_8  31 lfrefDtdgdGkisfeEF 48 
                 lf+ +D d dG+i+  E+
  KOO23533.1 557 LFDVLDVDMDGRITRAEY 574
                 9*************9996 PP

  == domain 22  score: 8.0 bits;  conditional E-value: 0.0019
   EF-hand_8  32 frefDtdgdGkisfeEF 48 
                 f+ +D d+dGk+++eEF
  KOO23533.1 578 FDIIDGDKDGKLTKEEF 594
                 8899************* PP

  == domain 23  score: 9.2 bits;  conditional E-value: 0.00084
   EF-hand_8  29 dilfrefDtdgdGkisfeE 47 
                 +++f+++D+dgdG ++ eE
  KOO23533.1 599 HAIFDKIDLDGDGFLTREE 617
                 689***********99998 PP

  == domain 24  score: 12.3 bits;  conditional E-value: 9e-05
   EF-hand_8  32 frefDtdgdGkisfeEFcv 50 
                 f+ fD+d+dG+i+ +E + 
  KOO23533.1 622 FDMFDLDHDGYITRDELHS 640
                 788*************997 PP

  == domain 25  score: 8.7 bits;  conditional E-value: 0.0012
   EF-hand_8  32 frefDtdgdGkisfeEF 48 
                 f+ +D dgdG+i+ eE+
  KOO23533.1 648 FDSLDADGDGMITREEY 664
                 8889***********96 PP

  == domain 26  score: 13.7 bits;  conditional E-value: 3.2e-05
   EF-hand_8  27 evdilfrefDtdgdGkisfeEF 48 
                 e ++ fr +D+++dGk+s  EF
  KOO23533.1 663 EYEAAFRIMDRNRDGKLSRAEF 684
                 67889****************9 PP

  == domain 27  score: 10.7 bits;  conditional E-value: 0.00028
   EF-hand_8  32 frefDtdgdGkisfeEFcvl 51 
                 f+++D+dgdG i+f+E+   
  KOO23533.1 692 FKRLDLDGDGFITFDEYKKG 711
                 899*************9865 PP

  == domain 28  score: 14.6 bits;  conditional E-value: 1.7e-05
   EF-hand_8  32 frefDtdgdGkisfeEFc 49 
                 f+ +Dt++dGk+s+eEF+
  KOO23533.1 712 FDMMDTNKDGKLSKEEFM 729
                 788**************8 PP

>> SPARC_Ca_bdg  Secreted protein acidic and rich in cysteine Ca binding region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.1   0.0      0.38   4.9e+02      51      75 ..     101     125 ..      77     128 .. 0.66
   2 ?    1.4   0.0       0.3   3.9e+02      60      76 ..     130     146 ..     126     171 .. 0.70
   3 ?    3.2   0.1     0.082     1e+02      93     111 ..     199     217 ..     149     219 .. 0.66
   4 ?    3.9   0.3     0.051        66      58     110 ..     198     260 ..     194     263 .. 0.50
   5 ?    1.4   0.0       0.3   3.9e+02      93     110 ..     289     306 ..     263     309 .. 0.54
   6 ?    3.9   0.2     0.051        65      60     109 ..     310     350 ..     304     353 .. 0.50
   7 ?    3.8   0.1     0.054        69      60      77 ..     335     352 ..     331     400 .. 0.56
   8 ?    4.0   0.1     0.048        62      63     111 ..     404     442 ..     378     444 .. 0.57
   9 ?    5.4   0.1     0.017        22      59     110 ..     444     487 ..     439     489 .. 0.83
  10 !    7.9   0.1    0.0028       3.6      58     110 ..     469     528 ..     468     531 .. 0.67
  11 ?    1.2   0.0      0.34   4.4e+02     110     110 ..     574     574 ..     530     597 .. 0.61
  12 ?    4.7   0.1     0.028        36      60     110 ..     578     618 ..     549     621 .. 0.78
  13 ?    6.2   0.1      0.01        13      60     110 ..     622     664 ..     617     667 .. 0.83
  14 ?    2.0   0.0       0.2   2.5e+02      58      77 ..     646     665 ..     643     674 .. 0.77
  15 ?    4.1   0.3     0.043        56      94     110 ..     712     728 ..     665     730 .. 0.57

  Alignments for each domain:
  == domain 1  score: 1.1 bits;  conditional E-value: 0.38
  SPARC_Ca_bdg  51 eckepvawkFsklDtnsdkvlsksE 75 
                   + k+  ++ F+ lD + d+ ++++E
    KOO23533.1 101 KAKKDSGFVFDILDADGDGRITRAE 125
                   4555667778888888877777766 PP

  == domain 2  score: 1.4 bits;  conditional E-value: 0.3
  SPARC_Ca_bdg  60 FsklDtnsdkvlsksEL 76 
                   F+ +Dtn+d+++s++E 
    KOO23533.1 130 FDIIDTNHDGFISREEF 146
                   55666666666666664 PP

  == domain 3  score: 3.2 bits;  conditional E-value: 0.082
  SPARC_Ca_bdg  93 flescDadkdkkislkEwc 111
                    +++ Dad d++i+++E++
    KOO23533.1 199 SFDALDADGDGEITKEEYM 217
                   3667777777777777776 PP

  == domain 4  score: 3.9 bits;  conditional E-value: 0.051
  SPARC_Ca_bdg  58 wkFsklDtnsdkvlsksELaplrap........lvkle.hCikpf.lescDadkdkkislkEw 110
                   + F+ lD + d+ ++k+E  +            +  le +C++ + +   D d d+k+++kEw
    KOO23533.1 198 FSFDALDADGDGEITKEEYMKAFDMidldrdgyITVLEfNCVSCLpFALIDKDGDGKLTRKEW 260
                   567777777777776666433222100001111222233455554466667777777777777 PP

  == domain 5  score: 1.4 bits;  conditional E-value: 0.3
  SPARC_Ca_bdg  93 flescDadkdkkislkEw 110
                    +e  Dad d++i+ kE+
    KOO23533.1 289 VFELLDADGDGRITFKEY 306
                   245556666666666665 PP

  == domain 6  score: 3.9 bits;  conditional E-value: 0.051
  SPARC_Ca_bdg  60 FsklDtnsdkvlsksELaplraplvklehCikpflescDadkdkkislkE 109
                   F+ lD ++d++ls++E  +  +            + + D+d+d+k+s+kE
    KOO23533.1 310 FDILDADKDGFLSRKEFGSGISG---------LIFAKLDTDRDGKLSRKE 350
                   56666666666666665432221.........223344444444444444 PP

  == domain 7  score: 3.8 bits;  conditional E-value: 0.054
  SPARC_Ca_bdg  60 FsklDtnsdkvlsksELa 77 
                   F klDt++d+ ls++E +
    KOO23533.1 335 FAKLDTDRDGKLSRKEYD 352
                   666666666666666643 PP

  == domain 8  score: 4.0 bits;  conditional E-value: 0.048
  SPARC_Ca_bdg  63 lDtnsdkvlsksELaplraplvklehCikpflescDadkdkkislkEwc 111
                   lD + d++++++E +              + ++  D d d+ is++Ew 
    KOO23533.1 404 LDADGDGHITREEFNCASG----------APFHLIDKDGDGYISRQEWH 442
                   4444444444444332222..........33667788888888888885 PP

  == domain 9  score: 5.4 bits;  conditional E-value: 0.017
  SPARC_Ca_bdg  59 kFsklDtnsdkvlsksELaplraplvklehCikpflescDadkdkkislkEw 110
                    F+ +D ++d++++ +E + l +p          ++++ Dad d++i+++E+
    KOO23533.1 444 VFDYFDEDHDGYITAKEFNTLAHP--------GFLFSTLDADGDGTITREEY 487
                   588999999999999999999995........56788999999999999998 PP

  == domain 10  score: 7.9 bits;  conditional E-value: 0.0028
  SPARC_Ca_bdg  58 wkFsklDtnsdkvlsksELap....l...raplvklehCikpflescDadkdkkislkEw 110
                   + Fs+lD + d++++++E ++    +   ++   + e+   +f+++ D+d d+k+s++E+
    KOO23533.1 469 FLFSTLDADGDGTITREEYNAgfdiMdtnQNGYLSQEEFQCAFFKTLDVDGDGKLSRAEY 528
                   568888888888888888665211111112234456777778999999999999999998 PP

  == domain 11  score: 1.2 bits;  conditional E-value: 0.34
  SPARC_Ca_bdg 110 w 110
                   +
    KOO23533.1 574 Y 574
                   2 PP

  == domain 12  score: 4.7 bits;  conditional E-value: 0.028
  SPARC_Ca_bdg  60 FsklDtnsdkvlsksELaplraplvklehCikpflescDadkdkkislkEw 110
                   F+ +D ++d+ l+k+E  ++ +          + +++ D+d d+ ++++Ew
    KOO23533.1 578 FDIIDGDKDGKLTKEEFGAVSH----------AIFDKIDLDGDGFLTREEW 618
                   7777777777787777777777..........6788888888888888888 PP

  == domain 13  score: 6.2 bits;  conditional E-value: 0.01
  SPARC_Ca_bdg  60 FsklDtnsdkvlsksELaplraplvklehCikpflescDadkdkkislkEw 110
                   F+ +D ++d+++++ EL+++  p        k  ++s Dad d+ i+++E+
    KOO23533.1 622 FDMFDLDHDGYITRDELHSVAGP--------KFAFDSLDADGDGMITREEY 664
                   88999999999999999999995........55588889999999988887 PP

  == domain 14  score: 2.0 bits;  conditional E-value: 0.2
  SPARC_Ca_bdg  58 wkFsklDtnsdkvlsksELa 77 
                   + F++lD + d++++++E +
    KOO23533.1 646 FAFDSLDADGDGMITREEYE 665
                   67888888888888888865 PP

  == domain 15  score: 4.1 bits;  conditional E-value: 0.043
  SPARC_Ca_bdg  94 lescDadkdkkislkEw 110
                   ++  D++kd+k+s++E+
    KOO23533.1 712 FDMMDTNKDGKLSKEEF 728
                   45556666666666666 PP

>> SHOCT  Short C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.9   0.2      0.32     4e+02      13      20 ..     139     146 ..     138     148 .. 0.91
   2 ?    2.0   0.0      0.15   1.9e+02      13      22 ..     163     172 ..     162     172 .. 0.90
   3 !    6.3   0.1    0.0062         8      12      20 ..     208     216 ..     208     219 .. 0.88
   4 ?   -0.4   0.0      0.81     1e+03      13      20 ..     273     280 ..     272     281 .. 0.87
   5 ?   -2.9   0.0       5.1   6.5e+03      13      21 ..     364     372 ..     363     372 .. 0.87
   6 ?    1.1   0.1      0.27   3.5e+02      15      22 ..     392     399 ..     392     399 .. 0.91
   7 ?    3.6   0.0     0.045        58      13      21 ..     410     418 ..     409     420 .. 0.88
   8 ?   -1.9   0.0       2.4   3.1e+03      13      22 ..     454     463 ..     453     464 .. 0.85
   9 ?    4.4   0.1     0.026        34      13      22 ..     480     489 ..     479     489 .. 0.89
  10 ?    3.4   0.0     0.053        68      12      21 ..     499     508 ..     498     510 .. 0.88
  11 ?   -0.2   0.0      0.73   9.3e+02      13      22 ..     521     530 ..     520     530 .. 0.87
  12 ?   -2.7   0.0       4.4   5.7e+03      13      20 ..     541     548 ..     540     551 .. 0.83
  13 ?   -1.4   0.0       1.7   2.2e+03      15      22 ..     569     576 ..     569     576 .. 0.91
  14 ?    0.4   0.0      0.46   5.9e+02      12      20 ..     586     594 ..     585     596 .. 0.86
  15 !    7.0   0.2    0.0039         5      13      22 ..     657     666 ..     656     667 .. 0.89
  16 ?   -2.9   0.0         5   6.4e+03      13      21 ..     677     685 ..     676     685 .. 0.84
  17 ?   -1.1   0.0       1.4   1.7e+03      12      20 ..     720     728 ..     719     728 .. 0.87

  Alignments for each domain:
  == domain 1  score: 0.9 bits;  conditional E-value: 0.32
       SHOCT  13 GeIteEEF 20 
                 G I++EEF
  KOO23533.1 139 GFISREEF 146
                 99*****9 PP

  == domain 2  score: 2.0 bits;  conditional E-value: 0.15
       SHOCT  13 GeIteEEFea 22 
                 G +t++E+ea
  KOO23533.1 163 GHLTRAEYEA 172
                 89******97 PP

  == domain 3  score: 6.3 bits;  conditional E-value: 0.0062
       SHOCT  12 rGeIteEEF 20 
                 +GeIt+EE+
  KOO23533.1 208 DGEITKEEY 216
                 5*******9 PP

  == domain 4  score: -0.4 bits;  conditional E-value: 0.81
       SHOCT  13 GeIteEEF 20 
                 G It++EF
  KOO23533.1 273 GKITKAEF 280
                 88*****9 PP

  == domain 5  score: -2.9 bits;  conditional E-value: 5.1
       SHOCT  13 GeIteEEFe 21 
                 G I++ EF+
  KOO23533.1 364 GMIDKREFN 372
                 99*****96 PP

  == domain 6  score: 1.1 bits;  conditional E-value: 0.27
       SHOCT  15 IteEEFea 22 
                 It+EEF+a
  KOO23533.1 392 ITREEFNA 399
                 9*****86 PP

  == domain 7  score: 3.6 bits;  conditional E-value: 0.045
       SHOCT  13 GeIteEEFe 21 
                 G It+EEF+
  KOO23533.1 410 GHITREEFN 418
                 99******7 PP

  == domain 8  score: -1.9 bits;  conditional E-value: 2.4
       SHOCT  13 GeIteEEFea 22 
                 G It  EF++
  KOO23533.1 454 GYITAKEFNT 463
                 88******85 PP

  == domain 9  score: 4.4 bits;  conditional E-value: 0.026
       SHOCT  13 GeIteEEFea 22 
                 G It+EE++a
  KOO23533.1 480 GTITREEYNA 489
                 99******86 PP

  == domain 10  score: 3.4 bits;  conditional E-value: 0.053
       SHOCT  12 rGeIteEEFe 21 
                 +G +++EEF+
  KOO23533.1 499 NGYLSQEEFQ 508
                 799******8 PP

  == domain 11  score: -0.2 bits;  conditional E-value: 0.73
       SHOCT  13 GeIteEEFea 22 
                 G ++++E+ea
  KOO23533.1 521 GKLSRAEYEA 530
                 779*****97 PP

  == domain 12  score: -2.7 bits;  conditional E-value: 4.4
       SHOCT  13 GeIteEEF 20 
                 G +t+ EF
  KOO23533.1 541 GFLTKWEF 548
                 99*****9 PP

  == domain 13  score: -1.4 bits;  conditional E-value: 1.7
       SHOCT  15 IteEEFea 22 
                 It++E++a
  KOO23533.1 569 ITRAEYNA 576
                 9*****86 PP

  == domain 14  score: 0.4 bits;  conditional E-value: 0.46
       SHOCT  12 rGeIteEEF 20 
                 +G +t+EEF
  KOO23533.1 586 DGKLTKEEF 594
                 5889****9 PP

  == domain 15  score: 7.0 bits;  conditional E-value: 0.0039
       SHOCT  13 GeIteEEFea 22 
                 G It+EE+ea
  KOO23533.1 657 GMITREEYEA 666
                 99*******8 PP

  == domain 16  score: -2.9 bits;  conditional E-value: 5
       SHOCT  13 GeIteEEFe 21 
                 G ++++EF+
  KOO23533.1 677 GKLSRAEFN 685
                 779*****6 PP

  == domain 17  score: -1.1 bits;  conditional E-value: 1.4
       SHOCT  12 rGeIteEEF 20 
                 +G +++EEF
  KOO23533.1 720 DGKLSKEEF 728
                 5889****9 PP

>> EF-hand_4  Cytoskeletal-regulatory complex EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.1       1.3   1.7e+03      47      69 ..     108     130 ..      84     143 .. 0.76
   2 ?   -3.2   0.0       6.5   8.3e+03      49      65 ..     154     170 ..     149     179 .. 0.81
   3 ?    4.6   0.1     0.024        31      40      78 ..     211     249 ..     207     253 .. 0.87
   4 ?    3.9   0.1      0.04        52      40      76 ..     255     293 ..     251     297 .. 0.76
   5 ?    2.0   0.1      0.15     2e+02      48      65 ..     289     306 ..     285     314 .. 0.88
   6 ?   -0.7   0.0         1   1.3e+03      45      67 ..     306     328 ..     299     342 .. 0.77
   7 !   11.8   0.3   0.00013      0.17      37      70 ..     343     376 ..     336     387 .. 0.85
   8 ?    2.2   0.0      0.13   1.7e+02      49      66 ..     381     398 ..     378     404 .. 0.85
   9 ?    2.5   0.0      0.11   1.4e+02      42      78 ..     394     430 ..     389     441 .. 0.82
  10 ?   -1.8   0.0       2.4     3e+03      42      66 ..     438     462 ..     432     466 .. 0.83
  11 ?   -1.0   0.0       1.3   1.7e+03      46      68 ..     488     510 ..     472     521 .. 0.71
  12 ?    2.6   0.1     0.099   1.3e+02      37      77 ..     520     562 ..     496     571 .. 0.73
  13 !    7.7   0.2    0.0027       3.4      39      77 ..     568     606 ..     559     611 .. 0.83
  14 ?   -1.8   0.1       2.4     3e+03      45      65 ..     618     638 ..     610     660 .. 0.73
  15 ?   -0.3   0.0      0.78     1e+03      53      72 ..     652     671 ..     634     690 .. 0.76
  16 ?   -0.6   0.1      0.96   1.2e+03      52      65 ..     695     708 ..     675     718 .. 0.83
  17 ?    2.7   0.1     0.096   1.2e+02      44      67 ..     707     730 ..     702     733 .. 0.85

  Alignments for each domain:
  == domain 1  score: -1.0 bits;  conditional E-value: 1.3
   EF-hand_4  47 kiwdladidedgkldfeefciam 69 
                  ++d+ d d dg++   e++   
  KOO23533.1 108 FVFDILDADGDGRITRAEYIAGF 130
                 589999******99999987654 PP

  == domain 2  score: -3.2 bits;  conditional E-value: 6.5
   EF-hand_4  49 wdladidedgkldfeef 65 
                 ++l d d dg+l   e+
  KOO23533.1 154 FKLLDTDGDGHLTRAEY 170
                 578899****9987776 PP

  == domain 3  score: 4.6 bits;  conditional E-value: 0.024
   EF-hand_4  40 leedklekiwdladidedgkldfeefciamrlifdlvng 78 
                 +++++  k +d+ d+d dg +   ef  +  l f l+++
  KOO23533.1 211 ITKEEYMKAFDMIDLDRDGYITVLEFNCVSCLPFALIDK 249
                 567788899*****************9999999999976 PP

  == domain 4  score: 3.9 bits;  conditional E-value: 0.04
   EF-hand_4  40 leedklekiwdladidedgkldfeefciamr..lifdlv 76 
                 l+ ++ e+ ++  d+d dgk+   ef i+ r  ++f+l+
  KOO23533.1 255 LTRKEWEEGFKHFDLDGDGKITKAEFLIVSRagFVFELL 293
                 5566666667778***************99833466665 PP

  == domain 5  score: 2.0 bits;  conditional E-value: 0.15
   EF-hand_4  48 iwdladidedgkldfeef 65 
                 +++l d d dg++ f+e+
  KOO23533.1 289 VFELLDADGDGRITFKEY 306
                 789*************98 PP

  == domain 6  score: -0.7 bits;  conditional E-value: 1
   EF-hand_4  45 lekiwdladidedgkldfeefci 67 
                  +k +d+ d d+dg l  +ef  
  KOO23533.1 306 YQKGFDILDADKDGFLSRKEFGS 328
                 56778999********9999964 PP

  == domain 7  score: 11.8 bits;  conditional E-value: 0.00013
   EF-hand_4  37 nskleedklekiwdladidedgkldfeefciamr 70 
                 + kl+ ++ +  ++l did dg++d  ef i+ r
  KOO23533.1 343 DGKLSRKEYDAGFKLMDIDRDGMIDKREFNITAR 376
                 5688888899999******************998 PP

  == domain 8  score: 2.2 bits;  conditional E-value: 0.13
   EF-hand_4  49 wdladidedgkldfeefc 66 
                 ++l d+d dg++  eef 
  KOO23533.1 381 FSLLDVDGDGRITREEFN 398
                 6899************96 PP

  == domain 9  score: 2.5 bits;  conditional E-value: 0.11
   EF-hand_4  42 edklekiwdladidedgkldfeefciamrlifdlvng 78 
                  ++++  +++ d d dg++  eef  a    f l+++
  KOO23533.1 394 REEFNAGFNVLDADGDGHITREEFNCASGAPFHLIDK 430
                 56666677889*************9999888888876 PP

  == domain 10  score: -1.8 bits;  conditional E-value: 2.4
   EF-hand_4  42 edklekiwdladidedgkldfeefc 66 
                  ++ ++++d  d d+dg +  +ef 
  KOO23533.1 438 RQEWHSVFDYFDEDHDGYITAKEFN 462
                 56778899999*******9999995 PP

  == domain 11  score: -1.0 bits;  conditional E-value: 1.3
   EF-hand_4  46 ekiwdladidedgkldfeefcia 68 
                 +  +d+ d +++g l  eef  a
  KOO23533.1 488 NAGFDIMDTNQNGYLSQEEFQCA 510
                 45567778888888888888665 PP

  == domain 12  score: 2.6 bits;  conditional E-value: 0.099
   EF-hand_4  37 nskleedklekiwdladidedgkldfeefciamr..lifdlvn 77 
                 + kl+  + e  +d+ d d dg l   ef+ a r  ++fd+++
  KOO23533.1 520 DGKLSRAEYEAGFDIIDYDRDGFLTKWEFMAASRpgFLFDVLD 562
                 4567777777778888888888888888888877556677765 PP

  == domain 13  score: 7.7 bits;  conditional E-value: 0.0027
   EF-hand_4  39 kleedklekiwdladidedgkldfeefciamrlifdlvn 77 
                 +++  + +  +d+ d d+dgkl  eef  + + ifd ++
  KOO23533.1 568 RITRAEYNAGFDIIDGDKDGKLTKEEFGAVSHAIFDKID 606
                 55666667778999**********************875 PP

  == domain 14  score: -1.8 bits;  conditional E-value: 2.4
   EF-hand_4  45 lekiwdladidedgkldfeef 65 
                  e  +d+ d+d+dg +  +e+
  KOO23533.1 618 WEAGFDMFDLDHDGYITRDEL 638
                 556678999999999988886 PP

  == domain 15  score: -0.3 bits;  conditional E-value: 0.78
   EF-hand_4  53 didedgkldfeefciamrli 72 
                 d d dg++  ee+  a r++
  KOO23533.1 652 DADGDGMITREEYEAAFRIM 671
                 77888888888887777764 PP

  == domain 16  score: -0.6 bits;  conditional E-value: 0.96
   EF-hand_4  52 adidedgkldfeef 65 
                  d+d dg + f+e+
  KOO23533.1 695 LDLDGDGFITFDEY 708
                 5999*******998 PP

  == domain 17  score: 2.7 bits;  conditional E-value: 0.096
   EF-hand_4  44 klekiwdladidedgkldfeefci 67 
                 + +k +d+ d ++dgkl  eef++
  KOO23533.1 707 EYKKGFDMMDTNKDGKLSKEEFML 730
                 56777999**************86 PP

>> Dockerin_1  Dockerin type I domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.3   0.1      0.16     2e+02      37      47 ..     113     123 ..     109     127 .. 0.85
   2 ?   -1.6   0.0       2.6   3.3e+03      38      46 ..     134     142 ..     131     146 .. 0.68
   3 ?   -0.2   0.0      0.93   1.2e+03      28      47 ..     148     167 ..     144     171 .. 0.81
   4 ?   -2.3   0.1       4.1   5.3e+03      38      47 ..     178     187 ..     175     190 .. 0.65
   5 ?    2.4   0.1      0.14   1.8e+02      35      47 ..     201     213 ..     199     218 .. 0.83
   6 ?    1.1   0.1      0.35   4.5e+02      35      51 ..     221     237 ..     217     240 .. 0.81
   7 !   11.1   0.0   0.00028      0.36      33      55 ..     263     285 ..     246     286 .. 0.88
   8 ?    1.1   0.0      0.36   4.6e+02      37      46 ..     293     302 ..     291     306 .. 0.86
   9 ?   -2.1   0.0       3.6   4.6e+03      36      47 ..     337     348 ..     335     353 .. 0.78
  10 ?    1.1   0.1      0.37   4.8e+02      36      50 ..     357     371 ..     346     376 .. 0.79
  11 ?    5.0   0.2     0.021        27      37      47 ..     384     394 ..     381     399 .. 0.84
  12 ?    0.7   0.0      0.47   6.1e+02      35      47 ..     402     414 ..     394     418 .. 0.80
  13 ?   -0.6   0.0       1.2   1.6e+03      34      51 ..     445     462 ..     429     466 .. 0.75
  14 ?    0.5   0.0      0.54   6.9e+02      37      46 ..     474     483 ..     471     487 .. 0.82
  15 ?    3.9   0.0     0.048        61      35      47 ..     513     525 ..     498     529 .. 0.82
  16 ?    3.3   0.1     0.072        92      37      47 ..     561     571 ..     558     575 .. 0.83
  17 ?   -1.6   0.1       2.4   3.1e+03      35      44 ..     603     612 ..     582     616 .. 0.74
  18 ?   -1.3   0.0         2   2.5e+03      35      47 ..     623     635 ..     619     641 .. 0.80
  19 ?    1.0   0.7      0.39     5e+02      33      46 ..     691     704 ..     651     705 .. 0.68
  20 ?    4.5   0.0     0.031        39      35      53 ..     713     731 ..     706     733 .. 0.87

  Alignments for each domain:
  == domain 1  score: 2.3 bits;  conditional E-value: 0.16
                 GSTT-SSCESH CS
  Dockerin_1  37 aDvNgDGrvna 47 
                 +D +gDGr++ 
  KOO23533.1 113 LDADGDGRITR 123
                 799******97 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 2.6
                 STT-SSCES CS
  Dockerin_1  38 DvNgDGrvn 46 
                 D N DG ++
  KOO23533.1 134 DTNHDGFIS 142
                 666666665 PP

  == domain 3  score: -0.2 bits;  conditional E-value: 0.93
                 TTSCCCHGGGSTT-SSCESH CS
  Dockerin_1  28 qssssngkaaDvNgDGrvna 47 
                 ++s+ + k +D +gDG  + 
  KOO23533.1 148 TESNAPFKLLDTDGDGHLTR 167
                 5678888999******8875 PP

  == domain 4  score: -2.3 bits;  conditional E-value: 4.1
                 STT-SSCESH CS
  Dockerin_1  38 DvNgDGrvna 47 
                 D +gDG ++ 
  KOO23533.1 178 DNDGDGFITR 187
                 6667777765 PP

  == domain 5  score: 2.4 bits;  conditional E-value: 0.14
                 GGGSTT-SSCESH CS
  Dockerin_1  35 kaaDvNgDGrvna 47 
                 +a+D +gDG++++
  KOO23533.1 201 DALDADGDGEITK 213
                 5899******997 PP

  == domain 6  score: 1.1 bits;  conditional E-value: 0.35
                 GGGSTT-SSCESHHHHH CS
  Dockerin_1  35 kaaDvNgDGrvnalDal 51 
                 ++ D+++DG ++ l + 
  KOO23533.1 221 DMIDLDRDGYITVLEFN 237
                 6889999*999988776 PP

  == domain 7  score: 11.1 bits;  conditional E-value: 0.00028
                 CHGGGSTT-SSCESHHHHHHHHH CS
  Dockerin_1  33 ngkaaDvNgDGrvnalDallvin 55 
                   k++D++gDG++++  +l+v +
  KOO23533.1 263 GFKHFDLDGDGKITKAEFLIVSR 285
                 56789***************986 PP

  == domain 8  score: 1.1 bits;  conditional E-value: 0.36
                 GSTT-SSCES CS
  Dockerin_1  37 aDvNgDGrvn 46 
                 +D +gDGr++
  KOO23533.1 293 LDADGDGRIT 302
                 6999999998 PP

  == domain 9  score: -2.1 bits;  conditional E-value: 3.6
                 GGSTT-SSCESH CS
  Dockerin_1  36 aaDvNgDGrvna 47 
                 ++D ++DG+ + 
  KOO23533.1 337 KLDTDRDGKLSR 348
                 579999999775 PP

  == domain 10  score: 1.1 bits;  conditional E-value: 0.37
                 GGSTT-SSCESHHHH CS
  Dockerin_1  36 aaDvNgDGrvnalDa 50 
                   D+++DG ++++ +
  KOO23533.1 357 LMDIDRDGMIDKREF 371
                 579999999988766 PP

  == domain 11  score: 5.0 bits;  conditional E-value: 0.021
                 GSTT-SSCESH CS
  Dockerin_1  37 aDvNgDGrvna 47 
                 +Dv+gDGr++ 
  KOO23533.1 384 LDVDGDGRITR 394
                 69999999986 PP

  == domain 12  score: 0.7 bits;  conditional E-value: 0.47
                 GGGSTT-SSCESH CS
  Dockerin_1  35 kaaDvNgDGrvna 47 
                 + +D +gDG ++ 
  KOO23533.1 402 NVLDADGDGHITR 414
                 6789999999985 PP

  == domain 13  score: -0.6 bits;  conditional E-value: 1.2
                 HGGGSTT-SSCESHHHHH CS
  Dockerin_1  34 gkaaDvNgDGrvnalDal 51 
                  +++D + DG ++a  + 
  KOO23533.1 445 FDYFDEDHDGYITAKEFN 462
                 568888899999987765 PP

  == domain 14  score: 0.5 bits;  conditional E-value: 0.54
                 GSTT-SSCES CS
  Dockerin_1  37 aDvNgDGrvn 46 
                 +D +gDG+++
  KOO23533.1 474 LDADGDGTIT 483
                 7999999998 PP

  == domain 15  score: 3.9 bits;  conditional E-value: 0.048
                 GGGSTT-SSCESH CS
  Dockerin_1  35 kaaDvNgDGrvna 47 
                 k++Dv+gDG+ + 
  KOO23533.1 513 KTLDVDGDGKLSR 525
                 789******9876 PP

  == domain 16  score: 3.3 bits;  conditional E-value: 0.072
                 GSTT-SSCESH CS
  Dockerin_1  37 aDvNgDGrvna 47 
                 +Dv+ DGr++ 
  KOO23533.1 561 LDVDMDGRITR 571
                 7********97 PP

  == domain 17  score: -1.6 bits;  conditional E-value: 2.4
                 GGGSTT-SSC CS
  Dockerin_1  35 kaaDvNgDGr 44 
                 ++ D++gDG 
  KOO23533.1 603 DKIDLDGDGF 612
                 4667888876 PP

  == domain 18  score: -1.3 bits;  conditional E-value: 2
                 GGGSTT-SSCESH CS
  Dockerin_1  35 kaaDvNgDGrvna 47 
                 +++D++ DG ++ 
  KOO23533.1 623 DMFDLDHDGYITR 635
                 5789999998875 PP

  == domain 19  score: 1.0 bits;  conditional E-value: 0.39
                 CHGGGSTT-SSCES CS
  Dockerin_1  33 ngkaaDvNgDGrvn 46 
                 + k +D++gDG ++
  KOO23533.1 691 PFKRLDLDGDGFIT 704
                 44566777777665 PP

  == domain 20  score: 4.5 bits;  conditional E-value: 0.031
                 GGGSTT-SSCESHHHHHHH CS
  Dockerin_1  35 kaaDvNgDGrvnalDallv 53 
                 ++ D N+DG+ ++  ++lv
  KOO23533.1 713 DMMDTNKDGKLSKEEFMLV 731
                 689*********9999988 PP

>> PMBR  Pseudomurein-binding repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.5   0.0      0.64   8.2e+02       2      13 ..     118     129 ..     117     130 .. 0.84
   2 ?   -2.7   0.0       6.4   8.2e+03       2      12 ..     162     172 ..     161     174 .. 0.81
   3 ?    2.5   0.0      0.14   1.8e+02       2      14 ..     208     220 ..     207     221 .. 0.89
   4 ?   -1.6   0.0       2.8   3.6e+03       1      11 [.     271     281 ..     271     281 .. 0.87
   5 ?   -1.9   0.0       3.5   4.5e+03       2      10 ..     343     351 ..     342     353 .. 0.90
   6 ?   -2.2   0.0       4.3   5.6e+03       2      10 ..     389     397 ..     388     399 .. 0.88
   7 ?   -2.9   0.0       7.5   9.6e+03       2      10 ..     409     417 ..     408     417 .. 0.85
   8 ?    1.3   0.0      0.34   4.4e+02       1      10 [.     478     487 ..     478     491 .. 0.89
   9 ?   -0.1   0.0      0.98   1.3e+03       1      12 [.     519     530 ..     519     532 .. 0.83
  10 ?   -2.5   0.0       5.5   7.1e+03       2      10 ..     586     594 ..     585     594 .. 0.87
  11 ?    0.2   0.0      0.75   9.6e+02       3      14 ..     657     668 ..     655     669 .. 0.82
  12 ?   -1.5   0.0       2.6   3.3e+03       5      13 ..     703     711 ..     699     712 .. 0.81
  13 ?   -1.5   0.0       2.6   3.4e+03       2      10 ..     720     728 ..     719     729 .. 0.86

  Alignments for each domain:
  == domain 1  score: 0.5 bits;  conditional E-value: 0.64
        PMBR   2 sgkisyeeyldm 13 
                 +g+i++ ey++ 
  KOO23533.1 118 DGRITRAEYIAG 129
                 799******975 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 6.4
        PMBR   2 sgkisyeeyld 12 
                 +g +++ ey +
  KOO23533.1 162 DGHLTRAEYEA 172
                 799******76 PP

  == domain 3  score: 2.5 bits;  conditional E-value: 0.14
        PMBR   2 sgkisyeeyldma 14 
                 +g i++eey +++
  KOO23533.1 208 DGEITKEEYMKAF 220
                 799*******987 PP

  == domain 4  score: -1.6 bits;  conditional E-value: 2.8
        PMBR   1 gsgkisyeeyl 11 
                 g+gki++ e+l
  KOO23533.1 271 GDGKITKAEFL 281
                 579*****997 PP

  == domain 5  score: -1.9 bits;  conditional E-value: 3.5
        PMBR   2 sgkisyeey 10 
                 +gk+s+ ey
  KOO23533.1 343 DGKLSRKEY 351
                 79*****99 PP

  == domain 6  score: -2.2 bits;  conditional E-value: 4.3
        PMBR   2 sgkisyeey 10 
                 +g+i++ee+
  KOO23533.1 389 DGRITREEF 397
                 799****97 PP

  == domain 7  score: -2.9 bits;  conditional E-value: 7.5
        PMBR   2 sgkisyeey 10 
                 +g i++ee+
  KOO23533.1 409 DGHITREEF 417
                 799****97 PP

  == domain 8  score: 1.3 bits;  conditional E-value: 0.34
        PMBR   1 gsgkisyeey 10 
                 g+g+i++eey
  KOO23533.1 478 GDGTITREEY 487
                 579******9 PP

  == domain 9  score: -0.1 bits;  conditional E-value: 0.98
        PMBR   1 gsgkisyeeyld 12 
                 g+gk+s+ ey +
  KOO23533.1 519 GDGKLSRAEYEA 530
                 579*******76 PP

  == domain 10  score: -2.5 bits;  conditional E-value: 5.5
        PMBR   2 sgkisyeey 10 
                 +gk+++ee+
  KOO23533.1 586 DGKLTKEEF 594
                 79*****97 PP

  == domain 11  score: 0.2 bits;  conditional E-value: 0.75
        PMBR   3 gkisyeeyldma 14 
                 g i++eey +++
  KOO23533.1 657 GMITREEYEAAF 668
                 669*****9998 PP

  == domain 12  score: -1.5 bits;  conditional E-value: 2.6
        PMBR   5 isyeeyldm 13 
                 i+++ey++ 
  KOO23533.1 703 ITFDEYKKG 711
                 9*****986 PP

  == domain 13  score: -1.5 bits;  conditional E-value: 2.6
        PMBR   2 sgkisyeey 10 
                 +gk+s+ee+
  KOO23533.1 720 DGKLSKEEF 728
                 79******8 PP

>> DUF2782  Protein of unknown function (DUF2782)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.0         7   8.9e+03      58      73 ..     110     125 ..     100     128 .. 0.77
   2 ?    0.2   0.0      0.68   8.7e+02      56      73 ..     152     169 ..     149     176 .. 0.83
   3 ?   -3.2   0.0       8.2     1e+04      60      73 ..     176     189 ..     171     197 .. 0.78
   4 ?    2.8   0.0      0.11   1.4e+02      56      73 ..     242     259 ..     228     266 .. 0.84
   5 ?   -2.0   0.0       3.3   4.2e+03      54      72 ..     286     304 ..     281     311 .. 0.77
   6 ?   -1.1   0.0       1.8   2.3e+03      51      73 ..     374     396 ..     370     405 .. 0.77
   7 ?    5.5   0.0     0.015        20      53      73 ..     420     440 ..     408     445 .. 0.88

  Alignments for each domain:
  == domain 1  score: -3.0 bits;  conditional E-value: 7
     DUF2782  58 YYLvdkdgdgkleekd 73 
                 + ++d+dgdg++++++
  KOO23533.1 110 FDILDADGDGRITRAE 125
                 557899****999875 PP

  == domain 2  score: 0.2 bits;  conditional E-value: 0.68
     DUF2782  56 ppYYLvdkdgdgkleekd 73 
                  p+ L+d+dgdg+l++++
  KOO23533.1 152 APFKLLDTDGDGHLTRAE 169
                 6899*********99875 PP

  == domain 3  score: -3.2 bits;  conditional E-value: 8.2
     DUF2782  60 Lvdkdgdgkleekd 73 
                 L+d+dgdg +++++
  KOO23533.1 176 LFDNDGDGFITRAE 189
                 899*****998875 PP

  == domain 4  score: 2.8 bits;  conditional E-value: 0.11
     DUF2782  56 ppYYLvdkdgdgkleekd 73 
                  p+ L+dkdgdgkl++k+
  KOO23533.1 242 LPFALIDKDGDGKLTRKE 259
                 6999**********9985 PP

  == domain 5  score: -2.0 bits;  conditional E-value: 3.3
     DUF2782  54 igppYYLvdkdgdgkleek 72 
                  g  + L+d+dgdg+++ k
  KOO23533.1 286 AGFVFELLDADGDGRITFK 304
                 56777799******98765 PP

  == domain 6  score: -1.1 bits;  conditional E-value: 1.8
     DUF2782  51 tPkigppYYLvdkdgdgkleekd 73 
                 t + g  + L+d dgdg++++++
  KOO23533.1 374 TARPGFLFSLLDVDGDGRITREE 396
                 5566777889********99885 PP

  == domain 7  score: 5.5 bits;  conditional E-value: 0.015
     DUF2782  53 kigppYYLvdkdgdgkleekd 73 
                 + g p++L+dkdgdg +++++
  KOO23533.1 420 ASGAPFHLIDKDGDGYISRQE 440
                 5799***********999885 PP

>> CCD48  Coiled-coil domain-containing protein 48
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.5   0.0     0.028        36      45      85 ..     109     149 ..     106     175 .. 0.83
   2 ?   -0.6   0.0      0.24     3e+02      44      65 ..     262     283 ..     258     317 .. 0.86
   3 ?    3.4   0.1     0.015        19      46      80 ..     381     415 ..     379     424 .. 0.85
   4 ?    0.3   0.0      0.13   1.6e+02      45      70 ..     511     536 ..     470     551 .. 0.79
   5 ?   -2.1   0.0       0.7   8.9e+02      46      79 ..     648     681 ..     645     688 .. 0.83

  Alignments for each domain:
  == domain 1  score: 2.5 bits;  conditional E-value: 0.028
       CCD48  45 vfhhldcrGaGrlPradfralcavlGlraegataaseaaed 85 
                 vf  ld+ G+Gr+ ra++ a   ++  + +g  + +e   +
  KOO23533.1 109 VFDILDADGDGRITRAEYIAGFDIIDTNHDGFISREEFGTE 149
                 8999**************99999999999988777665444 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 0.24
       CCD48  44 evfhhldcrGaGrlPradfral 65 
                 e f h+d  G+G++ +a+f ++
  KOO23533.1 262 EGFKHFDLDGDGKITKAEFLIV 283
                 7899999999999999999665 PP

  == domain 3  score: 3.4 bits;  conditional E-value: 0.015
       CCD48  46 fhhldcrGaGrlPradfralcavlGlraegataas 80 
                 f  ld  G+Gr+ r++f a  +vl    +g+ + +
  KOO23533.1 381 FSLLDVDGDGRITREEFNAGFNVLDADGDGHITRE 415
                 7789*******************999888876554 PP

  == domain 4  score: 0.3 bits;  conditional E-value: 0.13
       CCD48  45 vfhhldcrGaGrlPradfralcavlG 70 
                  f  ld  G+G+l ra++ a   ++ 
  KOO23533.1 511 FFKTLDVDGDGKLSRAEYEAGFDIID 536
                 57889999999999999887666655 PP

  == domain 5  score: -2.1 bits;  conditional E-value: 0.7
       CCD48  46 fhhldcrGaGrlPradfralcavlGlraegataa 79 
                 f  ld+ G+G + r+++ a  +++  + +g+ + 
  KOO23533.1 648 FDSLDADGDGMITREEYEAAFRIMDRNRDGKLSR 681
                 8899************999999998888887655 PP

>> Fve  Fungal immunomodulatory protein Fve
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.2   0.0      0.82     1e+03      67      90 ..     114     137 ..     105     151 .. 0.88
   2 ?    3.5   0.0      0.06        76      67      89 ..     294     316 ..     286     321 .. 0.89
   3 ?   -3.5   0.0         9   1.2e+04      68      88 ..     386     406 ..     383     408 .. 0.82
   4 ?    4.0   0.0     0.042        54      66      90 ..     474     498 ..     467     503 .. 0.90
   5 ?   -3.1   0.0       6.5   8.3e+03      73      88 ..     568     583 ..     562     585 .. 0.78
   6 ?    2.0   0.0      0.18   2.3e+02      68      89 ..     697     718 ..     685     722 .. 0.88

  Alignments for each domain:
  == domain 1  score: -0.2 bits;  conditional E-value: 0.82
                 -TTS-EEEEHHHCTTT--EETTS- CS
         Fve  67 esdgsqkvnfleynkgygvadtkt 90 
                 ++dg  ++   ey  g+ + dt+ 
  KOO23533.1 114 DADGDGRITRAEYIAGFDIIDTNH 137
                 689999999************985 PP

  == domain 2  score: 3.5 bits;  conditional E-value: 0.06
                 -TTS-EEEEHHHCTTT--EETTS CS
         Fve  67 esdgsqkvnfleynkgygvadtk 89 
                 ++dg  ++ f ey+kg+ + d++
  KOO23533.1 294 DADGDGRITFKEYQKGFDILDAD 316
                 68999**************9875 PP

  == domain 3  score: -3.5 bits;  conditional E-value: 9
                 TTS-EEEEHHHCTTT--EETT CS
         Fve  68 sdgsqkvnfleynkgygvadt 88 
                  dg  ++   e+n g+ v d+
  KOO23533.1 386 VDGDGRITREEFNAGFNVLDA 406
                 57888899999*****99886 PP

  == domain 4  score: 4.0 bits;  conditional E-value: 0.042
                 B-TTS-EEEEHHHCTTT--EETTS- CS
         Fve  66 vesdgsqkvnfleynkgygvadtkt 90 
                 +++dg  ++   eyn g+ + dt+ 
  KOO23533.1 474 LDADGDGTITREEYNAGFDIMDTNQ 498
                 5789999****************85 PP

  == domain 5  score: -3.1 bits;  conditional E-value: 6.5
                 EEEHHHCTTT--EETT CS
         Fve  73 kvnfleynkgygvadt 88 
                 ++   eyn g+ + d 
  KOO23533.1 568 RITRAEYNAGFDIIDG 583
                 566789*****99985 PP

  == domain 6  score: 2.0 bits;  conditional E-value: 0.18
                 TTS-EEEEHHHCTTT--EETTS CS
         Fve  68 sdgsqkvnfleynkgygvadtk 89 
                  dg   + f ey+kg+ + dt+
  KOO23533.1 697 LDGDGFITFDEYKKGFDMMDTN 718
                 5788899*************98 PP

>> Caleosin  Caleosin related protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.0   0.4      0.28   3.6e+02      13      36 ..     113     136 ..     110     142 .. 0.88
   2 ?    0.7   0.1      0.35   4.5e+02      11      26 ..     175     190 ..     166     202 .. 0.86
   3 ?   -0.3   0.1      0.71   9.1e+02      14      35 ..     204     225 ..     198     242 .. 0.67
   4 ?    5.9   0.6    0.0088        11      85     169 ..     250     338 ..     248     339 .. 0.79
   5 ?    2.3   0.1      0.11   1.4e+02      85     120 ..     387     422 ..     384     445 .. 0.73
   6 ?    4.5   0.4     0.024        31      10      25 ..     445     460 ..     438     474 .. 0.84
   7 ?    0.1   0.1      0.54   6.9e+02      14      36 ..     475     497 ..     466     508 .. 0.79
   8 ?    0.0   0.0      0.54   6.9e+02      85     117 ..     518     550 ..     512     555 .. 0.77
   9 ?   11.2   0.1   0.00021      0.27      85     160 ..     564     641 ..     559     647 .. 0.91
  10 ?    6.1   0.3    0.0076       9.7      85     156 ..     654     727 ..     641     731 .. 0.81

  Alignments for each domain:
  == domain 1  score: 1.0 bits;  conditional E-value: 0.28
    Caleosin  13 fDrdkdGiiypldtyrgfralgfn 36 
                  D d dG i+  + + gf  +++n
  KOO23533.1 113 LDADGDGRITRAEYIAGFDIIDTN 136
                 599***************988766 PP

  == domain 2  score: 0.7 bits;  conditional E-value: 0.35
    Caleosin  11 aFfDrdkdGiiypldt 26 
                 + fD+d dG+i+  + 
  KOO23533.1 175 DLFDNDGDGFITRAEL 190
                 57*********98775 PP

  == domain 3  score: -0.3 bits;  conditional E-value: 0.71
    Caleosin  14 DrdkdGiiypldtyrgfralgf 35 
                 D d dG i+  + +++f  +++
  KOO23533.1 204 DADGDGEITKEEYMKAFDMIDL 225
                 6667777776666666655543 PP

  == domain 4  score: 5.9 bits;  conditional E-value: 0.0088
    Caleosin  85 deeGrfvpqkfeeifskyakekkdaltlkevlellkgqr..ealDlfgwl.aallewlalylll.kdkdgllkkedvrgvydGslFyki 169
                 d +G+ +++++ee f++++ + ++++t  e+l + ++    e+lD  g    ++ e++  + +l  dkdg+l++ +  +   G +F k+
  KOO23533.1 250 DGDGKLTRKEWEEGFKHFDLDGDGKITKAEFLIVSRAGFvfELLDADGDGrITFKEYQKGFDILdADKDGFLSRKEFGSGISGLIFAKL 338
                 67899999999********9999999999999888876511557888875256778999887664799999999998888888888775 PP

  == domain 5  score: 2.3 bits;  conditional E-value: 0.11
    Caleosin  85 deeGrfvpqkfeeifskyakekkdaltlkevlellk 120
                 d +Gr ++++f++ f+  +++ ++++t +e++    
  KOO23533.1 387 DGDGRITREEFNAGFNVLDADGDGHITREEFNCASG 422
                 778999999999999999999999999888766555 PP

  == domain 6  score: 4.5 bits;  conditional E-value: 0.024
    Caleosin  10 vaFfDrdkdGiiypld 25 
                 +++fD+d+dG+i+  +
  KOO23533.1 445 FDYFDEDHDGYITAKE 460
                 579*********9876 PP

  == domain 7  score: 0.1 bits;  conditional E-value: 0.54
    Caleosin  14 DrdkdGiiypldtyrgfralgfn 36 
                 D d dG+i+  +   gf  +++n
  KOO23533.1 475 DADGDGTITREEYNAGFDIMDTN 497
                 88889999888888888766655 PP

  == domain 8  score: 0.0 bits;  conditional E-value: 0.54
    Caleosin  85 deeGrfvpqkfeeifskyakekkdaltlkevle 117
                 d +G+  ++++e+ f+  + ++++ lt +e+++
  KOO23533.1 518 DGDGKLSRAEYEAGFDIIDYDRDGFLTKWEFMA 550
                 667888888888888888888888888888775 PP

  == domain 9  score: 11.2 bits;  conditional E-value: 0.00021
    Caleosin  85 deeGrfvpqkfeeifskyakekkdaltlkevlellkgqrealDlfgw.laallewlalylll.kdkdgllkkedvrgv 160
                 d +Gr +++++++ f+  + +k+++lt +e+ ++ ++  + +Dl g  + +  ew+a + +   d+dg+++++++ +v
  KOO23533.1 564 DMDGRITRAEYNAGFDIIDGDKDGKLTKEEFGAVSHAIFDKIDLDGDgFLTREEWEAGFDMFdLDHDGYITRDELHSV 641
                 889*****************************************9983467789*****998569********99876 PP

  == domain 10  score: 6.1 bits;  conditional E-value: 0.0076
    Caleosin  85 deeGrfvpqkfeeifskyakekkdaltlkevlellkgqrealDlfgw.laallewlalylll.kdkdgllkked 156
                 d +G  +++++e+ f+  +++++++l+  e++       + lDl g  + ++ e++  + ++ ++kdg+l+ke+
  KOO23533.1 654 DGDGMITREEYEAAFRIMDRNRDGKLSRAEFNLASALPFKRLDLDGDgFITFDEYKKGFDMMdTNKDGKLSKEE 727
                 788999999******************99988777777777777776245677999999887568999999997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (741 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       277  (0.0154498); expected 358.6 (0.02)
Passed bias filter:                      260  (0.0145016); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                        17  (0.000948185); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              14  [number of targets reported over threshold]
# CPU time: 0.89u 0.30s 00:00:01.19 Elapsed: 00:00:00.53
# Mc/sec: 4199.30
//
Query:       KOO23534.1  [L=142]
Description: protein egl- isoform e [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    5.1e-17   62.5   0.0    6.1e-17   62.3   0.0    1.1  1  2OG-FeII_Oxy_3  2OG-Fe(II) oxygenase superfamily
    6.8e-07   29.9   0.0    1.2e-06   29.1   0.0    1.4  1  2OG-FeII_Oxy_4  2OG-Fe(II) oxygenase superfamily
  ------ inclusion threshold ------
      0.066   13.7   0.0      0.074   13.6   0.0    1.3  1  2OG-FeII_Oxy    2OG-Fe(II) oxygenase superfamily


Domain annotation for each model (and alignments):
>> 2OG-FeII_Oxy_3  2OG-Fe(II) oxygenase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.3   0.0     1e-20   6.1e-17       3      96 .]       2     120 ..       1     120 [. 0.92

  Alignments for each domain:
  == domain 1  score: 62.3 bits;  conditional E-value: 1e-20
                     EEEE-TT-EEEEE-SS--...--TT.-.EEEEEEEEE......E.T-B--EEE............................---TT-EEEEE-.. CS
  2OG-FeII_Oxy_3   3 vlrygegqeykpHvDnfe...keegsgqrrltvllyLne..kes.eeGGelelyekdk..................eavkikpkkgrlvlFesde 73 
                     v+ryg g+ + +HvDn+    + e  + r+lt ++y+++  +++ ++GG l+l+ +++                     +++p  +rlvlF sd 
      KOO23534.1   2 VARYGYGDAFARHVDNNCcrgQGELCNGRVLTTVYYMQDadWDAeTDGGCLRLFGSQQplgepmdtaatpladdtpARLDVAPLMDRLVLFLSDF 96 
                     89*************9889986666689*********99*966669********9999****************99999999************* PP

                     B-TEEE--B.-SS.-EEEEEEEEE CS
  2OG-FeII_Oxy_3  74 llpHevlpvtkgg.eRlsltgwir 96 
                     + pHevlpv+++  +R++ t+w++
      KOO23534.1  97 RCPHEVLPVRRREaNRFATTIWYW 120
                     *********95556********96 PP

>> 2OG-FeII_Oxy_4  2OG-Fe(II) oxygenase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.1   0.0     2e-10   1.2e-06       3      92 ..       2     119 ..       1     120 [. 0.71

  Alignments for each domain:
  == domain 1  score: 29.1 bits;  conditional E-value: 2e-10
  2OG-FeII_Oxy_4   3 vssYekgdvllnHdDvle........geRrvayilyle.eeWked.dGGaL.llsdde.....g.....dv......tksivPkwnqlvlFevke 70 
                     v++Y  gd++++H D+          + R+++ ++y++ ++W+++ dGG+L l+ +++            +        +++P +++lvlF +  
      KOO23534.1   2 VARYGYGDAFARHVDNNCcrgqgelcNGRVLTTVYYMQdADWDAEtDGGCLrLFGSQQplgepMdtaatPLaddtpaRLDVAPLMDRLVLFLSDF 96 
                     57999********999644555444457*********857**86538****555544444333032332113332324499************64 PP

  2OG-FeII_Oxy_4  71 s..hsvaevasvaekeRlsisgWf 92 
                        h+v  v    e++R++ + W+
      KOO23534.1  97 RcpHEVLPVRR-REANRFATTIWY 119
                     446*****996.888*******97 PP

>> 2OG-FeII_Oxy  2OG-Fe(II) oxygenase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.0   1.2e-05     0.074      54      99 ..      76     119 ..       1     121 [. 0.66

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 1.2e-05
                   ---TTEEEEEE-HHHHHHTTS-S----EEE----GTGS.EEEEEEEE CS
  2OG-FeII_Oxy  54 ppvdnslivniGdallflsngryksvlHrVlpvneger.Rvsiayfi 99 
                   +p  + + ++    +lfls+    +++H+Vlpv++ e  R++ + ++
    KOO23534.1  76 TPARLDVAPLMDRLVLFLSDF---RCPHEVLPVRRREAnRFATTIWY 119
                   333444555555559999999...8******99997778***99997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (142 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       259  (0.0144459); expected 358.6 (0.02)
Passed bias filter:                      204  (0.0113782); expected 358.6 (0.02)
Passed Vit filter:                         8  (0.000446204); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.39u 0.25s 00:00:00.64 Elapsed: 00:00:00.41
# Mc/sec: 1037.51
//
Query:       KOO23535.1  [L=391]
Description: phospholipase carboxylesterase family protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.6e-16   60.8   0.0    2.5e-16   60.2   0.0    1.2  1  Abhydrolase_2    Phospholipase/Carboxylesterase
     0.0035   17.0   0.0      0.016   14.9   0.0    2.0  1  FSH1             Serine hydrolase (FSH1)
     0.0075   15.8   0.1        3.2    7.2   0.1    2.1  2  Peptidase_S9     Prolyl oligopeptidase family
  ------ inclusion threshold ------
      0.061   12.8   4.4        4.9    6.6   0.0    3.1  3  Esterase_phd     Esterase PHB depolymerase
       0.11   11.4   0.0       0.17   10.8   0.0    1.2  1  Chlorophyllase2  Chlorophyllase enzyme


Domain annotation for each model (and alignments):
>> Abhydrolase_2  Phospholipase/Carboxylesterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.2   0.0   6.9e-20   2.5e-16      11     199 ..      90     294 ..      81     304 .. 0.77

  Alignments for each domain:
  == domain 1  score: 60.2 bits;  conditional E-value: 6.9e-20
                    S---EEEEEE--TT--S....HHHHHHHH.TT...--TTEEEEEE---EEE-G.GGTT-EEE-SS-B--......SSTTS..-B-HHHHHHHHHHH CS
  Abhydrolase_2  11 dkaqavviflHGlGdsg....hawaeaaktea...alpnikfifphgpelpvt.lnggmrmpaWfdlvg......lspek..kedeagikksaekl 90 
                    + ++ +vi+lHG  +sg     +w  a++      al   k++f+++p + v   +g  r paW d ++       +pe   + de + + s  k+
     KOO23535.1  90 RHHAGTVIMLHGFTSSGkqlaSGWIPALARRLgqpALSSLKLVFLNAPVRAVScYEGSPRHPAWHDYYTdhggadGTPEVeeEIDEGQLAWSRAKI 185
                    57889************98887787766654322278899*********666515666799*****9862222112233333446666777999** PP

                    HHHHHHHHHTT.--GGGEEEEEETHHHHHHHHHHHT-SS--SEEEEES---TTGGGTTTTS-GGGGG-EEEEEEETT-SSS-HHHHHHHHHHHH.T CS
  Abhydrolase_2  91 eelidaelkkg.ipssriiigGFSqGaalalylaltlpkklggivafsgalplsqklessatavtkklpilqiHgeeDpvvplalgkaakevlk.k 184
                    +e+id e +    +  r++igG SqG+  al +alt pk l+g++a  g +  s+  +  + +++  l i+  Hg +D  +  +l+ +++  l  k
     KOO23535.1 186 HEVIDGEAELLgGDYARVAIGGASQGCCTALDAALTHPKLLAGVFASFGHVYKSTLRAVGPDKTA--LKIFAFHGACDHCIAASLALRSYAELFdK 279
                    ********9865999***********************************999999999999999..99*************99998876554404 PP

                    TS-GEEEEEETT--S CS
  Abhydrolase_2 185 llkkvelksyeglaH 199
                     l++   ++ ++l H
     KOO23535.1 280 GLEELRVHVEPKLTH 294
                    444555555555555 PP

>> FSH1  Serine hydrolase (FSH1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.0   4.4e-06     0.016       5     176 ..      94     265 ..      90     302 .. 0.59

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 4.4e-06
        FSH1   5 kkiLcLhGytqsgeiFrak.tsalrkllkk...lnvelvyldaplelaekadlpkseseeeekseeeeesraWfrkkde.....kneyegleesldavk 94 
                  ++++LhG+t+sg+ +++  + al + l +   + ++lv+l+ap+++ +  + +  +         ++ +  +   + +     + +  +l  s ++++
  KOO23535.1  94 GTVIMLHGFTSSGKQLASGwIPALARRLGQpalSSLKLVFLNAPVRAVSCYEGSPRH------PAWHDYYTDHGGADGTpeveeEIDEGQLAWSRAKIH 186
                 689**********9988753789999999999999***********93332222222......222333333333333322211333333444455555 PP

        FSH1  95 dyike.......ngpfdGiiGFSqGaalaallaslleellkeashpslkfailvsGfkleepkyeeyyeedkiqtptLhvlGelDtvvd 176
                 ++i+            + i G SqG++ a   a      l   +hp+l   +++s   + +++ ++    dk +++++ ++G  D +++
  KOO23535.1 187 EVIDGeaellggDYARVAIGGASQGCCTALDAA------L---THPKLLAGVFASFGHVYKSTLRAV-GPDKTALKIFAFHGACDHCIA 265
                 555553444333333567777788877653322......2...344454555555444434433333.355566666666666666665 PP

>> Peptidase_S9  Prolyl oligopeptidase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.2   0.1   0.00089       3.2      36      97 ..     176     234 ..     163     242 .. 0.79
   2 !    6.6   0.0    0.0013       4.7     145     188 ..     252     296 ..     235     312 .. 0.85

  Alignments for each domain:
  == domain 1  score: 7.2 bits;  conditional E-value: 0.00089
                   TSGGGGHHHHHHHHHHHHHHHHTTS--GGGEEEEEETHHHHHHHHHHHH-GGG-SEEEEESE CS
  Peptidase_S9  36 gkrklgqnefdDfiaaaealakegyvdserlaitGgSyGGyltgaalnqrpdlFkaavaevp 97 
                   g+  +  ++++ +i++  +l   +y+   r+ai G+S G  +++ a+  +p+l +++ a+ +
    KOO23535.1 176 GQLAWSRAKIHEVIDGEAELLGGDYA---RVAIGGASQGCCTALDAALTHPKLLAGVFASFG 234
                   67777777777777777777776666...***************99999***9999988766 PP

  == domain 2  score: 6.6 bits;  conditional E-value: 0.0013
                   EEEEEEETT-SSS-THHHHHHHHHHH--S-S.EEEEEETTS-SST CS
  Peptidase_S9 145 plLlihGlaDdrvppaealklvaaLqkkgkn.vlllifpdegHgv 188
                   +++ +hG  D  +  + al+ +a+L +kg + ++++++p+  H  
    KOO23535.1 252 KIFAFHGACDHCIAASLALRSYAELFDKGLEeLRVHVEPKLTHCQ 296
                   7899***************************9***********44 PP

>> Esterase_phd  Esterase PHB depolymerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6   0.0    0.0014       4.9       9      47 ..      86     123 ..      78     137 .. 0.80
   2 ?    5.4   0.1    0.0032        11      89     134 ..     193     238 ..     179     315 .. 0.83
   3 ?    0.5   0.5     0.096   3.5e+02     129     161 ..     349     383 ..     343     389 .. 0.70

  Alignments for each domain:
  == domain 1  score: 6.6 bits;  conditional E-value: 0.0014
  Esterase_phd   9 pGarrgamplvvmlhGctqsveefaaGtrmnlladklGv 47 
                   p   r     v+mlhG t s +++a+G  + +la++lG 
    KOO23535.1  86 PRDGRHHAGTVIMLHGFTSSGKQLASGW-IPALARRLGQ 123
                   4444555789***************995.7899999986 PP

  == domain 2  score: 5.4 bits;  conditional E-value: 0.0032
  Esterase_phd  89 vdehrvdaarvyvaGlsaGaaladllalhypdvfaavalhsGlalG 134
                   ++  + d arv + G s G++ a   al++p  +a v    G  + 
    KOO23535.1 193 AELLGGDYARVAIGGASQGCCTALDAALTHPKLLAGVFASFGHVYK 238
                   55567799************************99999877776665 PP

  == domain 3  score: 0.5 bits;  conditional E-value: 0.096
  Esterase_phd 129 sGlalGeaadvisaldvmrrGlrqap..aaavdal 161
                   sG +    +  +   + mr+G r  p  +aa++a 
    KOO23535.1 349 SGTTATSGNAKAEDSSRMRSGQRGRPkaGAAIEAA 383
                   66666777777888899****98777224566655 PP

>> Chlorophyllase2  Chlorophyllase enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   4.7e-05      0.17      68     113 ..     176     224 ..     156     248 .. 0.83

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 4.7e-05
  Chlorophyllase2  68 kvlnWlakgLesvlp...eevepdlsklalsgHSrGgktafalalgkak 113
                       +l W  +++++v+    e +  d  ++a+ g S+G+ ta++ al + k
       KOO23535.1 176 GQLAWSRAKIHEVIDgeaELLGGDYARVAIGGASQGCCTALDAALTHPK 224
                      468999********988788899**********************9977 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (391 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       402  (0.0224218); expected 358.6 (0.02)
Passed bias filter:                      333  (0.0185733); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.50u 0.25s 00:00:00.75 Elapsed: 00:00:00.40
# Mc/sec: 2909.73
//
Query:       KOO23536.1  [L=593]
Description: inositol 5-phosphatase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.4e-08   33.8   0.0    3.9e-08   33.1   0.0    1.3  1  Exo_endo_phos  Endonuclease/Exonuclease/phosphatase family
  ------ inclusion threshold ------
      0.061   13.7   0.1       0.54   10.7   0.3    2.2  2  FumaraseC_C    Fumarase C C-terminus


Domain annotation for each model (and alignments):
>> Exo_endo_phos  Endonuclease/Exonuclease/phosphatase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.1   0.0   4.4e-12   3.9e-08       1     233 []      28     314 ..      28     314 .. 0.86

  Alignments for each domain:
  == domain 1  score: 33.1 bits;  conditional E-value: 4.4e-12
                    EEEEESTGCHHHHTHHHHHHHHHHHHHHC.TT..SEEEEEEEBSCTCHHHHHHHHHTTCEEEEECCH............................. CS
                    xxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx............................. RF
  Exo_endo_phos   1 ltwNvngqaspalgssrrsdrladlltay.da..DvlgLQEvdddelsriplllalggflgasstsp............................. 64 
                    +++N++++       + +s +++ +l+   ++  +++ +QE ++ +              g + +                               
     KOO23536.1  28 ASFNMGRG------VPTSSEDIRRWLRPDtRPslYAVTVQECKYEPVLGASDCE------GDWLRLLslslgpeyerlssismrdirlavyvlrel 111
                    69*****7......5567889*****87786688*******9999844443333......333333344446666666667788888889999999 PP

                    .............ECSSSTTSSEEEEEECSTE..EEEEEEEEEETSSSSGCEEEEEEEEEEEEEEECCCHHGHHHHHHHHHHHHHHHHHHHHHTTS CS
                    .............xxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Exo_endo_phos  65 .............tgggggggnggavlsrfpl..tslfrrtfiefndlvaalrreplaakleqlniashrdhdlvrdlqllalllqvealnadrga 145
                                 tg gg  gn+gav+s+  l   sl                                                           
     KOO23536.1 112 ahevsqietahkaTGLGGVVGNKGAVASSLHLrnSSL----------------------------------------------------------- 148
                    99999***************************99999........................................................... PP

                    EEEE...........................................EEE-SSSTSGGGBSCGHHHHHHCTTTHHSSCESCETTTTTTTTTTTEB- CS
                    xxxx...........................................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Exo_endo_phos 146 pviv...........................................aGDfNarpsdddsrvlrtrglalapapvglyllgggptptyvtraggsr 198
                     ++v                                           aGD+N+                                          r
     KOO23536.1 149 -CFVgahlaarperlaernanfadileglrlgrkefeltqqfhhvfwAGDLNY------------------------------------------R 201
                    .9999999999999999999999999999999999999999999999******..........................................* PP

                    B.................................................................................EEEEEECHHHCCEE CS
                    x.................................................................................xxxxxxxxxxxxxx RF
  Exo_endo_phos 199 l.................................................................................Drilaspalalfrs 213
                    +                                                                                 Dr+l+         
     KOO23536.1 202 VelpfeeaisaaetvqlpgggakivglakllesdqlrrergagnafqgfveppltfaptykcevgvfprvyadkrgqapsftDRVLYH-------- 289
                    ****************************************************************************************........ PP

                    EEEEECCHHEEC............TSSCSSSB CS
                    xxxxxxxxxxxx............xxxxxxxx RF
  Exo_endo_phos 214 gvlppplalvrr............ealtlSDH 233
                           +l r+            + +tlSDH
     KOO23536.1 290 -------SLARCehelavlsyeaePTVTLSDH 314
                    .......555555566666667789******* PP

>> FumaraseC_C  Fumarase C C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.3   0.0      0.17   1.5e+03      27      50 ..      24      50 ..      16      51 .. 0.76
   2 ?   10.7   0.3   6.1e-05      0.54      13      46 ..     424     457 ..     420     462 .. 0.87

  Alignments for each domain:
  == domain 1  score: -0.3 bits;  conditional E-value: 0.17
                 -HHHHHHHTT-....-HHHHHHHT-HH CS
  FumaraseC_C 27 tlreavlelgl...lteeeldelldpe 50
                 t+r a   +g     ++e++ ++l+p 
   KOO23536.1 24 TIRVASFNMGRgvpTSSEDIRRWLRPD 50
                 66667766666667799********96 PP

  == domain 2  score: 10.7 bits;  conditional E-value: 6.1e-05
                  HHHHHHHHHHHHT--HHHHHHHTT-.-HHHHHHH CS
  FumaraseC_C  13 kAakIAkeAlkegktlreavlelgllteeeldel 46 
                   A +IA+++++++  + eav e +l t  ++ e+
   KOO23536.1 424 IADEIAHQMVETDAAVTEAVTEATLATPRRIVEA 457
                  699**********************998877665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (593 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       366  (0.0204139); expected 358.6 (0.02)
Passed bias filter:                      307  (0.0171231); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.53u 0.21s 00:00:00.74 Elapsed: 00:00:00.38
# Mc/sec: 4649.25
//
Query:       KOO23537.1  [L=515]
Description: d-2-hydroxyglutarate mitochondrial-like protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.7e-62  210.2   0.0    5.4e-62  209.7   0.0    1.2  1  FAD-oxidase_C  FAD linked oxidases, C-terminal domain
    2.5e-35  121.3   0.6    5.1e-35  120.2   0.6    1.5  1  FAD_binding_4  FAD binding domain


Domain annotation for each model (and alignments):
>> FAD-oxidase_C  FAD linked oxidases, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  209.7   0.0     6e-66   5.4e-62       2     250 .]     263     508 ..     262     508 .. 0.96

  Alignments for each domain:
  == domain 1  score: 209.7 bits;  conditional E-value: 6e-66
                    -SEEEEEEEEESSHHHHHHHHHHHHHH.T---SEEEEE-HHHHHHHHHTS-SS.TTS-TTT-EEEEEEEEE-HHHHHHHHHHHHHHHTTT-EEEEE CS
  FAD-oxidase_C   2 pearavalvafpsfeaavkavreiaqa.giipaalelmdkkaldlveatkgak.kglpdeeealllvefegddeeeaeeelealveaileatgaad 95 
                    p ++++a+++++sf+a+++++ +++++ g+ ++a+e++d+++++lv++++g    +l ++   ++l+e++g+++e+++++l+  +e+ + ++ +ad
     KOO23537.1 263 PTSVQLAFLGLSSFDAVLACFGAAKRDlGEVLSAVEFLDAESYELVNRHLGGRpPPLAPGSRHYMLLELSGSRAEHDQAKLSGFLEHVMAEGLVAD 358
                    778999**********************************************778889999*********************************** PP

                    ..........ETGGGGGGGGHHHHHHHHHCTTEEEEEEEEEEEHHHHHHHHHHHHHHHHHHHEEEEEEEEEETTEEEEEEEEEE...E..--TT-- CS
  FAD-oxidase_C  96 vlvaqdeaeaealwkaRkaalpylrdallkagvavlseDtsvPvsrladlvrdikalldkyglevvlfgHagdgnlhlyilfdl...adeaeeera 188
                    +++aqd+a+ + +w++R+++       +l++++av+++D+s+P+++l++l++ ++a+l+++g+ v+ fgH gdgnlhl+i+++    +d+a  +++
     KOO23537.1 359 GTIAQDQAQSQGIWRVREGITS-----ALGKEGAVYKYDVSIPLAELYTLCEVMRARLEAHGALVTGFGHLGDGNLHLNIYTPGrfnKDPAVLAAI 449
                    **********************.....8*****************************************************986222577999999 PP

                    THHHHHHHHHHHHTT-----------------------THHHHHHHHHHHH-TT--BSTT-- CS
  FAD-oxidase_C 189 eklvdevvdlavelgGsisgEHGvGldkkaylerekgeeglalmrriKaalDPkgiLNPgkv 250
                    e++v+e+   ++e +Gsis+EHG G++k a+l+++k+e  ++lmr iK +lDPkgiLNP+kv
     KOO23537.1 450 EPFVYEW---IAERRGSISAEHGLGVMKPAFLRMSKSESMIELMRGIKGLLDPKGILNPYKV 508
                    9999999...**************************************************97 PP

>> FAD_binding_4  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  120.2   0.6   5.6e-39   5.1e-35       3     136 ..      89     223 ..      87     225 .. 0.98

  Alignments for each domain:
  == domain 1  score: 120.2 bits;  conditional E-value: 5.6e-39
                    EEEEESSHHHHHHHHHHHHHCTSCEEEESSSTTEESTTC.SCCEEEEEETTS--EEEEETTTTEEEEETTSBHHHHHHHHHHHTTECSSGGGTTCG CS
  FAD_binding_4   3 avvrpeseeevaaalrlaneaglpvlvrGgGssllgqav.atggvvldlsrlnrileideeegtatveaGvtlgdlvealaakglllglepgsgip 97 
                    + +rp+s+ ev+++l+++ne++lp++++Gg ++l+g++v  ++ vvl+l r+nr+l +de +g ++ eaG++l+ l+e++ ++g++ +l+ g+  +
     KOO23537.1  89 LALRPGSTTEVSRILAHCNERRLPIVPQGGNTGLVGGSVpVDDEVVLSLGRMNRVLAMDEHAGNLVCEAGCVLETLQEYVWKRGYTMPLDLGAKGS 184
                    5689*******************************999999******************************************************* PP

                    SBHHHTTTTT-EETTEEGG--HHGTEEEEEEEETTSEEE CS
  FAD_binding_4  98 gtvGGaiatnagGygsekyGlirdnvlglevvladGevv 136
                    + +GG+iatnagG +  +yG+++  vlglevvladG+v+
     KOO23537.1 185 CQIGGNIATNAGGLRFLRYGSLHGSVLGLEVVLADGTVL 223
                    *************************************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (515 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       325  (0.0181271); expected 358.6 (0.02)
Passed bias filter:                      306  (0.0170673); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.52u 0.21s 00:00:00.73 Elapsed: 00:00:00.40
# Mc/sec: 3894.02
//
Query:       KOO23538.1  [L=67]
Description: hypothetical protein Ctob_001191 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
  ------ inclusion threshold ------
      0.032   14.2   0.2      0.035   14.1   0.2    1.2  1  PUA            PUA domain
        3.5    8.3  11.0        4.7    7.9  11.0    1.3  1  Ribosomal_60s  60s Acidic ribosomal protein


Domain annotation for each model (and alignments):
>> PUA  PUA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   0.2   3.9e-06     0.035       2      30 ..      13      41 ..      12      57 .. 0.91

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 3.9e-06
                EEEE-HHHHHHHHTT-EEEGGGEEEEETT CS
         PUA  2 rvvvddgAvkallsgasLlapGvvevegd 30
                ++ v++gA  a+++ga+ la+ v+++  +
  KOO23538.1 13 HIAVKQGAHSAVKQGAQALAAAVTSAASN 41
                588*********************99776 PP

>> Ribosomal_60s  60s Acidic ribosomal protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.9  11.0   0.00053       4.7      36      81 ..      21      63 ..       4      65 .. 0.52

  Alignments for each domain:
  == domain 1  score: 7.9 bits;  conditional E-value: 0.00053
                   XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XX--S CS
  Ribosomal_60s 36 eellangaaklaaaaaaaaaaaaaaaaaaaaeekkkeeeeeEeedd 81
                   ++++++ga++laaa+++aa+ aaa +++ ++++  +  e    ++d
     KOO23538.1 21 HSAVKQGAQALAAAVTSAASNAAARGSKYEKAALTAGDED---DED 63
                   3445555555444444444444444444444444444443...333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (67 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       810  (0.0451782); expected 358.6 (0.02)
Passed bias filter:                      358  (0.0199677); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.37u 0.24s 00:00:00.61 Elapsed: 00:00:00.40
# Mc/sec: 506.18
//
Query:       KOO23539.1  [L=140]
Description: hypothetical protein Ctob_001190 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    9.3e-05   22.5   0.0    0.00014   21.9   0.0    1.3  1  MOSC      MOSC domain


Domain annotation for each model (and alignments):
>> MOSC  MOSC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.9   0.0   7.8e-09   0.00014       2     130 ..       4     126 ..       3     127 .. 0.78

  Alignments for each domain:
  == domain 1  score: 21.9 bits;  conditional E-value: 7.8e-09
                 XX---GGGGSEEEEETHHHHHHHHHS..GGGGG-STTTT--SEEE.S-.......-TTT-BTT-E.EEETT............................ CS
        MOSC   2 rkihggdekavllisresldalneelkegrsveldpgrfreNivv.ggaaafeEdtwkelrigdrrfrlggacsRcqmvnvdqetga............ 87 
                   +h++ ++ v++ +++ +d ++++ ++      ++  ++eNi+v g+         ++++ +d+ f+++++             ga            
  KOO23539.1   4 DGVHYEADRLVSILTTDMIDMVQQQGGSA----TKVDHLGENILVeGM-------LFDDFKANDT-FEVVSE------------DGAsaltlkiveprl 78 
                 568999****************9999444....5666********777.......9999999999.999983............344445555665656 PP

                 EE----THHHHH....TTHHHHHH.HHT---EEEEEEE-EEEETTS-E CS
        MOSC  88 rprepcktlakf....rrvdkrvk.gkgrfGvylrvleegtvrvGdev 130
                  ++  +++l ++    r++++ ++ ++g+ G+ +r+ + g  rvG ++
  KOO23539.1  79 ASAVELSQLGDDegkkRSISNILTiQSGFSGWTARIATAGRARVGFKI 126
                 7888888888864655555554448****************9999665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (140 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       269  (0.0150036); expected 358.6 (0.02)
Passed bias filter:                      238  (0.0132746); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.35u 0.23s 00:00:00.57 Elapsed: 00:00:00.36
# Mc/sec: 1151.65
//
Query:       KOO23540.1  [L=325]
Description: calcium-activated outward-rectifying potassium channel 1 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.9e-26   91.2  11.1    7.2e-14   51.5   0.8    2.2  2  Ion_trans_2   Ion channel
    3.7e-06   26.4   1.2     0.0014   18.4   0.0    3.3  3  EF-hand_6     EF-hand domain
    0.00014   21.2   3.4     0.0097   15.4   0.0    3.3  3  EF-hand_1     EF hand
    0.00014   21.2  11.5      0.002   17.4   0.6    2.4  2  Ion_trans     Ion transport protein
     0.0011   18.7   0.7       0.66    9.8   0.1    2.4  2  IRK           Inward rectifier potassium channel transmembran
     0.0013   18.1   3.0       0.13   11.8   0.1    3.1  3  EF-hand_5     EF hand
     0.0063   16.9   0.3      0.079   13.4   0.1    2.5  3  EF-hand_7     EF-hand domain pair
  ------ inclusion threshold ------
      0.014   15.8   0.6      0.023   15.1   0.6    1.3  1  Phage_TAC_12  Phage tail assembly chaperone protein, TAC
       0.28    9.9   1.4        0.4    9.4   1.4    1.2  1  DUF2207       Predicted membrane protein (DUF2207)


Domain annotation for each model (and alignments):
>> Ion_trans_2  Ion channel
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.5   0.8   3.6e-17   7.2e-14      20      75 ..       3      60 ..       1      64 [. 0.90
   2 !   44.3   3.7   6.6e-15   1.3e-11       2      74 ..     113     182 ..     111     186 .. 0.86

  Alignments for each domain:
  == domain 1  score: 51.5 bits;  conditional E-value: 3.6e-17
                 .T---HHHHHHHHHHHHTTS----SSTT.---.--HHHHHHHHHHHHHHHHHHHHHHH CS
  Ion_trans_2 20 wekwsfldalYfsfvtltTiGYGdivpe.tda.grlftivyillGlalfalflavlgk 75
                 +e+w+++++lYf +v  +++GYGd+ p+ + +  r+ft+vyi++G+++++++l+ l++
   KOO23540.1  3 VEGWNIWQSLYFLMVIASSVGYGDLKPNpHGWeSRAFTVVYIIFGVCVVFALLSSLIT 60
                 5899************************666677*******************99876 PP

  == domain 2  score: 44.3 bits;  conditional E-value: 6.6e-15
                  HHHHTCHHHHHHHHT....T---HHHHHHHHHHHHTTS----SSTT-----HHHHHHHHHHHHHHHHHHHHHH CS
  Ion_trans_2   2 vlllvlifgaviysleegwekwsfldalYfsfvtltTiGYGdivpetdagrlftivyillGlalfalflavlg 74 
                  +++++ ++ a ++++    e+w+f +++Y ++ t+ T+GYGd++ ++d gr+ +++ i + +++++++ a++ 
   KOO23540.1 113 MVVVIQCLFAWVFCI---IEGWDFETSFYHCINTMATVGYGDVAINGDPGRMWAFFHIAISVSILSAIYADVR 182
                  566666666666666...7999************************9999**************999988775 PP

>> EF-hand_6  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.1   0.0      0.58   1.2e+03       8      17 ..      83      92 ..      82      92 .. 0.85
   2 ?    4.4   0.1     0.021        43       8      25 ..     209     225 ..     205     230 .. 0.81
   3 !   18.4   0.0   6.8e-07    0.0014       2      26 ..     241     265 ..     240     269 .. 0.91

  Alignments for each domain:
  == domain 1  score: -0.1 bits;  conditional E-value: 0.58
   EF-hand_6  8 lfDkdgdGki 17
                ++D dg+G +
  KOO23540.1 83 AIDLDGTGVL 92
                68******86 PP

  == domain 2  score: 4.4 bits;  conditional E-value: 0.021
   EF-hand_6   8 lfDkdgdGkidaeElrka 25 
                  +Dk+gdG +d+ E++  
  KOO23540.1 209 SLDKNGDG-VDKFEFVTG 225
                 58*****9.999998765 PP

  == domain 3  score: 18.4 bits;  conditional E-value: 6.8e-07
   EF-hand_6   2 lreaFklfDkdgdGkidaeElrkal 26 
                 + ++Fk +D+d +G++++++++  l
  KOO23540.1 241 FVKLFKVLDVDSSGTLTKDDIQEGL 265
                 6799*****************9887 PP

>> EF-hand_1  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.1   0.0      0.44   8.7e+02       9      16 ..      84      91 ..      82      92 .. 0.83
   2 ?    4.1   0.6     0.019        38       5      15 ..     206     216 ..     204     229 .. 0.84
   3 !   15.4   0.0   4.8e-06    0.0097       3      27 ..     242     266 ..     240     268 .. 0.90

  Alignments for each domain:
  == domain 1  score: -0.1 bits;  conditional E-value: 0.44
                HTTTSSSE CS
   EF-hand_1  9 fDkDgdGk 16
                +D Dg+G 
  KOO23540.1 84 IDLDGTGV 91
                8*****97 PP

  == domain 2  score: 4.1 bits;  conditional E-value: 0.019
                 HHHHHTTTSSS CS
   EF-hand_1   5 iFrefDkDgdG 15 
                 +++ +Dk+gdG
  KOO23540.1 206 LMMSLDKNGDG 216
                 57889****** PP

  == domain 3  score: 15.4 bits;  conditional E-value: 4.8e-06
                 HHHHHHHTTTSSSEEEHHHHHHHHH CS
   EF-hand_1   3 keiFrefDkDgdGkIdfeEfkellk 27 
                  ++F+++D+D +G++++++ +e l+
  KOO23540.1 242 VKLFKVLDVDSSGTLTKDDIQEGLA 266
                 689****************999886 PP

>> Ion_trans  Ion transport protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.4   0.6   9.9e-07     0.002     178     234 ..       7      60 ..       4      64 .. 0.91
   2 !    7.5   4.5    0.0011       2.1     135     222 ..     112     173 ..     103     179 .. 0.67

  Alignments for each domain:
  == domain 1  score: 17.4 bits;  conditional E-value: 9.9e-07
                 SHHHHHHHHHHHHTTSSHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
   Ion_trans 178 nfftallwlfrlmttegwgdilyatldekskvaliyfvifiilgsflllNlliavia 234
                 n++++l++l+++++++g+gd+ +++ + +   + ++ v++ii+g+ ++++ll  +i+
  KOO23540.1   7 NIWQSLYFLMVIASSVGYGDLKPNPHGWE---SRAFTVVYIIFGVCVVFALLSSLIT 60 
                 799*********************99888...999***************9977776 PP

  == domain 2  score: 7.5 bits;  conditional E-value: 0.0011
                 HHHHHHHHHHHHHHHHHHTTSCCCCCCSCCSTSSSTTTSSSSSSHHHHHHHHHHHHTTSSHHHHHHHHHHHSHHHHHHHHHHHHHHHH CS
   Ion_trans 135 llllvvlfifaligvqlfkgklreknecaktwenpnngntnFdnfftallwlfrlmttegwgdilyatldekskvaliyfvifiilgs 222
                 ++++v+ ++fa+++  +                      +   +f t+++  + +m t+g+gd+  +   ++   ++++f i i +++
  KOO23540.1 112 IMVVVIQCLFAWVFCIIE--------------------GW---DFETSFYHCINTMATVGYGDVAINGDPGR---MWAFFHIAISVSI 173
                 444555555555555555....................23...4668*************************...5555555544443 PP

>> IRK  Inward rectifier potassium channel transmembrane domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.3   0.0    0.0019       3.9      88     139 ..      11      62 ..       3      66 .. 0.85
   2 !    9.8   0.1   0.00033      0.66      75     113 ..     123     161 ..     113     188 .. 0.80

  Alignments for each domain:
  == domain 1  score: 7.3 bits;  conditional E-value: 0.0019
         IRK  88 allfslEtqttigyGsrvvteeCpeailllviqsivgllidavlvgivlaKl 139
                  l f +    ++gyG   ++ + +e+ ++ v+ +i+g+ +  +l++ +++K 
  KOO23540.1  11 SLYFLMVIASSVGYGDLKPNPHGWESRAFTVVYIIFGVCVVFALLSSLITKC 62 
                 56666677789**************************999999998888886 PP

  == domain 2  score: 9.8 bits;  conditional E-value: 0.00033
         IRK  75 kepCvanvksftsallfslEtqttigyGsrvvteeCpea 113
                 +  C+ +  +f + +   ++t +t+gyG  +++ +    
  KOO23540.1 123 WVFCIIEGWDFETSFYHCINTMATVGYGDVAINGDPGRM 161
                 567999999*******************99998765544 PP

>> EF-hand_5  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.0      0.93   1.8e+03       7      12 ..      83      88 ..      82      91 .. 0.85
   2 !    5.4   0.1    0.0069        14       8      14 ..     210     216 ..     204     225 .. 0.87
   3 !   11.8   0.1   6.6e-05      0.13       2      23 ..     242     263 ..     241     266 .. 0.88

  Alignments for each domain:
  == domain 1  score: -1.3 bits;  conditional E-value: 0.93
                HH-SS- CS
   EF-hand_5  7 aiDlNg 12
                aiDl+g
  KOO23540.1 83 AIDLDG 88
                89***9 PP

  == domain 2  score: 5.4 bits;  conditional E-value: 0.0069
                 H-SS-SS CS
   EF-hand_5   8 iDlNgDG 14 
                 +D+NgDG
  KOO23540.1 210 LDKNGDG 216
                 8****** PP

  == domain 3  score: 11.8 bits;  conditional E-value: 6.6e-05
                 HHHHHHH-SS-SSCE-HHHHHH CS
   EF-hand_5   2 kdtFqaiDlNgDGkIskeELkt 23 
                 +++F+ +D++ +G+++k+  ++
  KOO23540.1 242 VKLFKVLDVDSSGTLTKDDIQE 263
                 789**************98776 PP

>> EF-hand_7  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.0       4.8   9.6e+03      10      18 ..      81      91 ..      73      93 .. 0.57
   2 ?    0.3   0.0       0.5   9.9e+02      52      59 ..     209     216 ..     180     226 .. 0.76
   3 !   13.4   0.1     4e-05     0.079       7      27 ..     244     274 ..     239     293 .. 0.68

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 4.8
   EF-hand_7 10 e..lDtdgdgy 18
                +  +D dg+g 
  KOO23540.1 81 QsaIDLDGTGV 91
                44466666664 PP

  == domain 2  score: 0.3 bits;  conditional E-value: 0.5
   EF-hand_7  52 efDtdkdG 59 
                  +D+++dG
  KOO23540.1 209 SLDKNGDG 216
                 44666666 PP

  == domain 3  score: 13.4 bits;  conditional E-value: 4e-05
   EF-hand_7   7 aFkelDtdgdgyldkeellr..........l 27 
                  Fk lD+d +g l+k+++++           
  KOO23540.1 244 LFKVLDVDSSGTLTKDDIQEglaarqkqfdS 274
                 6******************966433333333 PP

>> Phage_TAC_12  Phage tail assembly chaperone protein, TAC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.1   0.6   1.2e-05     0.023      13      91 ..     202     280 ..     194     286 .. 0.88

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 1.2e-05
  Phage_TAC_12  13 fglkfvreidkelglkveginfgeGlsllvpgLesgdpevLvevlyaalshkkkrpsrdeieealekvdeekd.leklfd 91 
                   +++  + ++dk+    v++++f  G+  l+  ++++d++v+v+  +     ++++ ++d+i+e l++ +++ d +e++f+
    KOO23540.1 202 LDVNLMMSLDKNGDG-VDKFEFVTGMLALLNAVKQDDVDVFVKLFKVLDVDSSGTLTKDDIQEGLAARQKQFDsMENIFE 280
                   566667778888754.89***********************************************988999999999887 PP

>> DUF2207  Predicted membrane protein (DUF2207)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   1.4    0.0002       0.4     371     430 ..      24     126 ..       6     137 .. 0.86

  Alignments for each domain:
  == domain 1  score: 9.4 bits;  conditional E-value: 0.0002
     DUF2207 371 yfdkkgkkklkklsalglgliilglilillallllvll...........................................lvfllilllillliaiiv 426
                 y d k++ + ++++a+ +++ii+g+++++++l +l++                                             +++  l+++++++++++
  KOO23540.1  24 YGDLKPNPHGWESRAFTVVYIIFGVCVVFALLSSLITKcvvkpfidssraalerrfpqsaidldgtgvlvkvprtpfcyygKNLAIPLIMVVVIQCLFA 122
                 5566777788999***************9999888888******************************************8777777777777777777 PP

     DUF2207 427 lllf 430
                 ++++
  KOO23540.1 123 WVFC 126
                 7776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (325 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       890  (0.0496402); expected 358.6 (0.02)
Passed bias filter:                      637  (0.035529); expected 358.6 (0.02)
Passed Vit filter:                        55  (0.00306766); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.53u 0.23s 00:00:00.76 Elapsed: 00:00:00.42
# Mc/sec: 2328.23
//
Query:       KOO23541.1  [L=83]
Description: ef hand family protein, partial [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.4e-14   51.7   1.2    8.3e-07   28.1   0.2    2.1  2  EF-hand_1   EF hand
    3.3e-13   49.3   0.9    1.5e-08   34.4   0.2    2.1  2  EF-hand_8   EF-hand domain pair
      1e-12   46.9   0.3    1.4e-05   24.6   0.0    2.2  2  EF-hand_6   EF-hand domain
    1.4e-11   44.7   0.0    1.7e-11   44.4   0.0    1.1  1  EF-hand_7   EF-hand domain pair
    1.6e-10   39.9   3.4      7e-06   25.3   0.2    2.2  2  EF-hand_5   EF hand
     0.0019   18.0   0.8        1.3    9.0   0.0    2.1  2  EF-hand_10  EF hand
  ------ inclusion threshold ------
       0.11   12.8   0.0       0.15   12.4   0.0    1.2  1  EF-hand_9   EF-hand domain


Domain annotation for each model (and alignments):
>> EF-hand_1  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.0   0.1   1.5e-08   3.7e-05       2      26 ..       9      33 ..       8      36 .. 0.93
   2 !   28.1   0.2   3.3e-10   8.3e-07       1      26 [.      44      69 ..      44      72 .. 0.93

  Alignments for each domain:
  == domain 1  score: 23.0 bits;  conditional E-value: 1.5e-08
                HHHHHHHHTTTSSSEEEHHHHHHHH CS
   EF-hand_1  2 lkeiFrefDkDgdGkIdfeEfkell 26
                l+e+F+e+D  g+G++ +eEf++ll
  KOO23541.1  9 LEEAFNELDESGSGTLGIEEFQDLL 33
                79********************998 PP

  == domain 2  score: 28.1 bits;  conditional E-value: 3.3e-10
                HHHHHHHHHTTTSSSEEEHHHHHHHH CS
   EF-hand_1  1 elkeiFrefDkDgdGkIdfeEfkell 26
                e + +Fr +D Dg+G Id+eEf+ ++
  KOO23541.1 44 EAQAMFRSIDSDGSGGIDKEEFIVFM 69
                6789*******************998 PP

>> EF-hand_8  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.4   0.1   9.6e-06     0.025      29      53 ..      10      34 ..       7      36 .. 0.90
   2 !   34.4   0.2   5.7e-12   1.5e-08      19      52 ..      38      69 ..      30      70 .. 0.90

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 9.6e-06
   EF-hand_8 29 dilfrefDtdgdGkisfeEFcvlle 53
                ++ f+e+D+ g+G+++ eEF +ll+
  KOO23541.1 10 EEAFNELDESGSGTLGIEEFQDLLF 34
                677*****************99988 PP

  == domain 2  score: 34.4 bits;  conditional E-value: 5.7e-12
   EF-hand_8 19 lkkglseeevdilfrefDtdgdGkisfeEFcvll 52
                     s++e++++fr +D dg+G i++eEF+v++
  KOO23541.1 38 NT--ASPDEAQAMFRSIDSDGSGGIDKEEFIVFM 69
                45..79**************************98 PP

>> EF-hand_6  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.6   0.0   5.4e-09   1.4e-05       2      27 ..       9      34 ..       8      37 .. 0.92
   2 !   20.7   0.0     1e-07   0.00026       2      26 ..      45      69 ..      44      73 .. 0.89

  Alignments for each domain:
  == domain 1  score: 24.6 bits;  conditional E-value: 5.4e-09
   EF-hand_6  2 lreaFklfDkdgdGkidaeElrkalr 27
                l+eaF+++D +g+G++ +eE++++l 
  KOO23541.1  9 LEEAFNELDESGSGTLGIEEFQDLLF 34
                789********************997 PP

  == domain 2  score: 20.7 bits;  conditional E-value: 1e-07
   EF-hand_6  2 lreaFklfDkdgdGkidaeElrkal 26
                 ++ F+ +D dg+G id+eE++ ++
  KOO23541.1 45 AQAMFRSIDSDGSGGIDKEEFIVFM 69
                5789*****************8766 PP

>> EF-hand_7  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.4   0.0   6.5e-15   1.7e-11       4      70 ..       9      69 ..       6      70 .. 0.91

  Alignments for each domain:
  == domain 1  score: 44.4 bits;  conditional E-value: 6.5e-15
   EF-hand_7  4 lkeaFkelDtdgdgyldkeellrllrkifqgagegsklsdeelellfkefDtdkdGvisfdEFlkly 70
                l+eaF+elD  g+g l  ee+++ll         g+  s++e +++f+ +D+d++G i+ +EF  ++
  KOO23541.1  9 LEEAFNELDESGSGTLGIEEFQDLLF------ACGNTASPDEAQAMFRSIDSDGSGGIDKEEFIVFM 69
                899********************999......555666999**********************9998 PP

>> EF-hand_5  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.3   2.9e-06    0.0074       1      24 [.       9      32 ..       9      33 .. 0.91
   2 !   25.3   0.2   2.7e-09     7e-06       2      25 .]      46      69 ..      45      69 .. 0.91

  Alignments for each domain:
  == domain 1  score: 15.7 bits;  conditional E-value: 2.9e-06
                HHHHHHHH-SS-SSCE-HHHHHHH CS
   EF-hand_5  1 lkdtFqaiDlNgDGkIskeELktl 24
                l+++F+++D  g+G++ +eE++ l
  KOO23541.1  9 LEEAFNELDESGSGTLGIEEFQDL 32
                5778*****************987 PP

  == domain 2  score: 25.3 bits;  conditional E-value: 2.7e-09
                HHHHHHH-SS-SSCE-HHHHHHHH CS
   EF-hand_5  2 kdtFqaiDlNgDGkIskeELktlv 25
                +++F+ iD +g+G I+keE+  ++
  KOO23541.1 46 QAMFRSIDSDGSGGIDKEEFIVFM 69
                579*****************8775 PP

>> EF-hand_10  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.8   0.2    0.0012       3.1      25      44 ..      11      30 ..       9      34 .. 0.84
   2 !    9.0   0.0    0.0005       1.3      23      47 ..      45      69 ..      41      72 .. 0.92

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 0.0012
  EF-hand_10 25 kLFkkcDkSksgrLegeEie 44
                + F + D+S sg+L  eE++
  KOO23541.1 11 EAFNELDESGSGTLGIEEFQ 30
                5699**********988876 PP

  == domain 2  score: 9.0 bits;  conditional E-value: 0.0005
  EF-hand_10 23 AekLFkkcDkSksgrLegeEieeFy 47
                A+ +F+  D   sg ++ eE+  F+
  KOO23541.1 45 AQAMFRSIDSDGSGGIDKEEFIVFM 69
                899******************9996 PP

>> EF-hand_9  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   5.8e-05      0.15       3      62 ..      12      69 ..      10      71 .. 0.88

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 5.8e-05
   EF-hand_9  3 vFevcDtqktGrVpvsrlidyLravtaqdpeeseLeelakelDPdgedasvdldtflrvm 62
                 F+  D    G+  + +  d+L a+++ ++++ e +   +++D dg  + +d++ f + m
  KOO23541.1 12 AFNELDESGSGTLGIEEFQDLLFACGNTASPD-EAQAMFRSIDSDGS-GGIDKEEFIVFM 69
                5888899999*****************65555.6699**********.9*******9988 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (83 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       262  (0.0146132); expected 358.6 (0.02)
Passed bias filter:                      252  (0.0140554); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.35u 0.24s 00:00:00.59 Elapsed: 00:00:00.39
# Mc/sec: 632.16
//
Query:       KOO23542.1  [L=226]
Description: hypothetical protein Ctob_002521 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
  ------ inclusion threshold ------
      0.012   15.3   1.2       0.02   14.7   1.2    1.3  1  DctA-YdbH       Dicarboxylate transport
      0.035   13.9   1.2      0.062   13.1   0.5    1.8  2  RecO_C          Recombination protein O C terminal
       0.18   11.6   4.1       0.24   11.2   4.1    1.3  1  IPK             Inositol polyphosphate kinase
       0.44   10.2  24.4      0.075   12.7   6.4    2.1  2  YkyA            Putative cell-wall binding lipoprotein
        1.2    9.5  22.0        3.5    8.0  21.7    1.7  1  Fez1            Fez1
        2.3    8.9  25.6      0.056   14.0  11.0    2.9  2  HIP1_clath_bdg  Clathrin-binding domain of Huntingtin-interac
        5.7    7.2  13.0       0.17   12.1   2.4    3.2  3  Cnn_1N          Centrosomin N-terminal motif 1


Domain annotation for each model (and alignments):
>> DctA-YdbH  Dicarboxylate transport
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.7   1.2   7.6e-06      0.02       5      83 ..      40     126 ..      30     131 .. 0.73

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 7.6e-06
   DctA-YdbH   5 lnpgvpitdikadlqgeyp...lleakplqlskasadllgGelsleelrldlkkqkqeavlrls.....gldlaellalqklkglaa 83 
                 + + v+++++++ ++ +++    l++++++l++++ ++++G++++++lr +l+kq  +a   +      ++++ +ll++++ +g+aa
  KOO23542.1  40 VAAKVATEQMHLLASEKASlkaVLDDQQMRLENMQKEVADGRVEADHLRENLQKQAASAAASAAaasslEIEVTKLLRQLDEQGVAA 126
                 4444555555555544444777899***************************99766555443322223577888888888888876 PP

>> RecO_C  Recombination protein O C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.0      0.71   1.8e+03      99     128 ..      45      72 ..      41      97 .. 0.74
   2 ?   13.1   0.5   2.4e-05     0.062      90     148 ..     115     172 ..      74     177 .. 0.82

  Alignments for each domain:
  == domain 1  score: -1.4 bits;  conditional E-value: 0.71
                 T-SS----HHHHHHHHHTTTS-HHHHHHS- CS
      RecO_C  99 apagrplspetlallrlllrgdleklgelk 128
                 a ++++l +++ a l+++l++++ +l+  +
  KOO23542.1  45 ATEQMHLLASEKASLKAVLDDQQMRLE--N 72 
                 567788888888888888888665555..3 PP

  == domain 2  score: 13.1 bits;  conditional E-value: 2.4e-05
                 ..SSEE-TTT-SS----HHHHHHHHHTTTS-HHHHHHS---GGGHHHHHHHHHHHHHHH CS
      RecO_C  90 llcsecaakapagrplspetlallrlllrgdleklgelkvspeelrellrllrayleeh 148
                 ll +   ++ +a+++l  et +ll+ll ++  +++++ ++++e + e++r lr+ ++e+
  KOO23542.1 115 LLRQLDEQGVAAAQQLKSETRSLLALLDDQ-SAAAKKARADAERADEAKRALREEIDER 172
                 667777788999*****************9.666999****************987765 PP

>> IPK  Inositol polyphosphate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   4.1   9.4e-05      0.24      67     195 ..      70     210 ..      19     212 .. 0.75

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 9.4e-05
                 EEEEEHHHHC.T-SHHHHHHHHHHCCCSSSSCCHHHHHHHCHHHHHHHHHHHHHCSHS.....EEESSEEEEEEEETT..................... CS
         IPK  67 yltvdkkygr.slskeevkealkkFlsngkslrkdakaaskllerLqelkqvlesqes.....lrfyssSLLfvyegdseasekaeekeaeeeeeeesk 159
                 +++++k++   ++++++++e l+k  ++   ++ +a+aas+l  ++++l++ l +q +     l+  + SLL + +++s+a++ka+ + ++ +e+++  
  KOO23542.1  70 LENMQKEVADgRVEADHLRENLQKQAAS---AAASAAAASSLEIEVTKLLRQLDEQGVaaaqqLKSETRSLLALLDDQSAAAKKARADAERADEAKRAL 165
                 4445555444345556666666666554...44455555555555555555555554444434899999****************99999********* PP

                 .SSEEEEEE--TTEEE.........--TSS--HHHHHHHHHHHHH CS
         IPK 160 ekkvevklIDFAhvvp.........tesggpDegyllGlksLiki 195
                 +++++ ++I  +++            + ++++++yl +++++ ++
  KOO23542.1 166 REEIDERIIEASEARKlaeqlafdlATTQEKNQNYLAAIEQIARV 210
                 ***********999999********999***********998775 PP

>> YkyA  Putative cell-wall binding lipoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   6.4   2.9e-05     0.075      36     116 ..      18      97 ..      15     104 .. 0.79
   2 ?    2.8  12.5     0.033        84      12     120 ..      90     200 ..      84     212 .. 0.85

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 2.9e-05
        YkyA  36 elyeeiielgmdefdkikklsdealenveeReellekekesieeakeefe.kikeeieeiedeelkkeaeelieameeryea 116
                  +y+  +e +m+++ +++k+++ a + + e+  ll++ek+s+++  +  +  +++  +e+ d   + ea+ l e+++++ ++
  KOO23542.1  18 AIYDADMEEKMSKLRDVVKQAEVAAKVATEQMHLLASEKASLKAVLDDQQmRLENMQKEVADG--RVEADHLRENLQKQAAS 97 
                 79****************************************997655440445555555555..77777777777776655 PP

  == domain 2  score: 2.8 bits;  conditional E-value: 0.033
        YkyA  12 eavelEkefeeqqekLtelekkeqelyeeiielgmdefdkikklsdealenveeReellekekesieeakeefekikeeieei..edeelkkeaeelie 108
                 +++++  + ++ +   ++le + ++l  ++ e+g    +++k++   +l++++++    +k ++  e+a e+   ++eei+e   e +e++k ae+l+ 
  KOO23542.1  90 NLQKQAASAAASAAAASSLEIEVTKLLRQLDEQGVAAAQQLKSETRSLLALLDDQSAAAKKARADAERADEAKRALREEIDERiiEASEARKLAEQLAF 188
                 5566666777777788899**************************************************************976799999999999986 PP

        YkyA 109 ameeryeaydkl 120
                  + + +e+ +++
  KOO23542.1 189 DLATTQEKNQNY 200
                 666655555554 PP

>> Fez1  Fez1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.0  21.7    0.0014       3.5      18     153 ..      30     185 ..      27     206 .. 0.71

  Alignments for each domain:
  == domain 1  score: 8.0 bits;  conditional E-value: 0.0014
        Fez1  18 QLkds..qaevtqkl.seivalkaqlr.elrakleekeeeikeleesleektlelevcenelqrkkseaellrekvekleeelkelreelselsleeee 112
                  L+d+  qaev++k+  e ++l a+ +  l+a l++++ +++++++++ +   e +++ ++lq++ ++a      +++le e+++l ++l e+   +++
  KOO23542.1  30 KLRDVvkQAEVAAKVaTEQMHLLASEKaSLKAVLDDQQMRLENMQKEVADGRVEADHLRENLQKQAASAAASAAAASSLEIEVTKLLRQLDEQGVAAAQ 128
                 57774449***9996357777666555278999****************************************************99999998776666 PP

        Fez1 113 aa............lesdeakaqrqe....aeeleelkreverlraeLkeerqkkee 153
                 +              +s +ak+ r++     e+ ++l++e+++   e +e r+  e+
  KOO23542.1 129 QLksetrsllalldDQSAAAKKARADaeraDEAKRALREEIDERIIEASEARKLAEQ 185
                 657889999999884444444444442222233333444444444444444444333 PP

>> HIP1_clath_bdg  Clathrin-binding domain of Huntingtin-interacting protein 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0  11.0   2.2e-05     0.056       9      97 ..      22     113 ..      20     116 .. 0.72
   2 ?    1.5   4.6      0.17   4.4e+02      18      81 ..     148     220 ..     142     226 .] 0.59

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 2.2e-05
  HIP1_clath_bdg   9 Aevtkqlsvarqaqeeverekkeleeele...rlkeeaerkleeqkeelekLkreleakraelarlkssLesseqsgeqlssqlaaLqaEke 97 
                     A++   +s  r   ++ e + k  +e+++   + k++ +  l++q++ le++++e+++ r e ++l++ L++++ s +  ++  ++L+ E  
      KOO23542.1  22 ADMEEKMSKLRDVVKQAEVAAKVATEQMHllaSEKASLKAVLDDQQMRLENMQKEVADGRVEADHLRENLQKQAASAAASAAAASSLEIEVT 113
                     5555555555554444444444444444400044555567788***********************************99999999999865 PP

  == domain 2  score: 1.5 bits;  conditional E-value: 0.17
  HIP1_clath_bdg  18 arqaqeever...ekkeleeeler..lkeeaerkleeqk....eelekLkreleakraelarlkssLesseqs 81 
                     a++a+ + er   +k+ l ee+++  +++++ rkl+eq      ++++ +++  a  +++ar+ s+++sse++
      KOO23542.1 148 AKKARADAERadeAKRALREEIDEriIEASEARKLAEQLafdlATTQEKNQNYLAAIEQIARVASTITSSETK 220
                     4445544444111688888888653345566677777752111345556666777777788888888877765 PP

>> Cnn_1N  Centrosomin N-terminal motif 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.0   1.6     0.011        28      27      68 ..      25      79 ..      15      84 .. 0.72
   2 ?   12.1   2.4   6.5e-05      0.17       4      62 ..      65     122 ..      63     158 .. 0.90
   3 ?    0.0   0.5      0.38   9.8e+02      37      59 ..     168     190 ..     144     209 .. 0.52

  Alignments for each domain:
  == domain 1  score: 5.0 bits;  conditional E-value: 0.011
      Cnn_1N 27 eerleklse.............eqkeellkenielkveveslqkelkekkkllre 68
                ee++ kl++             eq+  l +e   lk  + + q  l++++k++ +
  KOO23542.1 25 EEKMSKLRDvvkqaevaakvatEQMHLLASEKASLKAVLDDQQMRLENMQKEVAD 79
                5666666666655555555555888888888888888888888888888887765 PP

  == domain 2  score: 12.1 bits;  conditional E-value: 6.5e-05
      Cnn_1N   4 EqeeqidkLkKENFdLKLriyfLeerleklseeqkeellkenielkveveslqkelkek 62 
                 +q+  +++++KE  d + +  +L+e+l+k + +   ++ +    l++ev +l ++l+e 
  KOO23542.1  65 DQQMRLENMQKEVADGRVEADHLRENLQKQAASAAASAAA-ASSLEIEVTKLLRQLDEQ 122
                 7999****************************66655555.899********9999986 PP

  == domain 3  score: 0.0 bits;  conditional E-value: 0.38
      Cnn_1N  37 qkeellkenielkveveslqkel 59 
                 +++e + e  e +   e+l  +l
  KOO23542.1 168 EIDERIIEASEARKLAEQLAFDL 190
                 33333333333333333333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (226 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2407  (0.134252); expected 358.6 (0.02)
Passed bias filter:                      477  (0.0266049); expected 358.6 (0.02)
Passed Vit filter:                        55  (0.00306766); expected 17.9 (0.001)
Passed Fwd filter:                        21  (0.00117129); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.66u 0.33s 00:00:00.99 Elapsed: 00:00:00.55
# Mc/sec: 1244.01
//
Query:       KOO23543.1  [L=146]
Description: hypothetical protein Ctob_002520 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (146 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       364  (0.0203023); expected 358.6 (0.02)
Passed bias filter:                      296  (0.0165096); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.41u 0.27s 00:00:00.68 Elapsed: 00:00:00.45
# Mc/sec: 981.68
//
Query:       KOO23544.1  [L=121]
Description: ADP-ribosyltransferase 1 precursor [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.2e-11   44.3   0.0    1.5e-11   44.0   0.0    1.0  1  ART             NAD:arginine ADP-ribosyltransferase
    2.8e-06   26.8   0.0    3.6e-06   26.5   0.0    1.1  1  ADPrib_exo_Tox  ADP-ribosyltransferase exoenzyme


Domain annotation for each model (and alignments):
>> ART  NAD:arginine ADP-ribosyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.0   0.0   1.7e-15   1.5e-11     125     216 ..       4     103 ..       2     108 .. 0.84

  Alignments for each domain:
  == domain 1  score: 44.0 bits;  conditional E-value: 1.7e-15
         ART 125 qvyRgvkgl.rfsrakkgksvRfgqFtssslkkkvae........efgqdtllsiktclgvpIkefskfpsedevLIppfevFkvtnlskeegkskiqL 214
                 +v+Rg+kgl +     +gk +   +F s s+k+++a+        +  ++ +++i +  g +I++fs  pse+evL pp+ +Fkv ++  +e++ k  L
  KOO23544.1   4 KVFRGIKGLlNPDVYAPGKRITWQAFSS-STKNQMATlvfvntsgRKLSGSIFVIDSITGKDIRHFSAEPSEEEVLFPPNSQFKVEKVVASEQEKKTLL 101
                 69*****9724567899*99*9999965.6666777668888776677899***********************************9998888887777 PP

         ART 215 rs 216
                 ++
  KOO23544.1 102 NQ 103
                 76 PP

>> ADPrib_exo_Tox  ADP-ribosyltransferase exoenzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.5   0.0     4e-10   3.6e-06     106     180 ..      21      98 ..      16     108 .. 0.84

  Alignments for each domain:
  == domain 1  score: 26.5 bits;  conditional E-value: 4e-10
                     T-EEEESS-EEEESSSS....SCCCTTTSEEEEEEE-TTSBEEE-CCCSSSGCG-EEEE-TTEEEEEEEEEEE...SG CS
  ADPrib_exo_Tox 106 gkvfkergyvSTslvkd...taasfggreilleltvpkgsegayisplslypgeaEvLlprgltykinkitlveandg 180
                     gk ++ ++++S + ++    +  + +gr+   ++ v +  +g +i  +s++p e EvL+p ++++k++k+   e++++
      KOO23544.1  21 GKRITWQAFSSSTKNQMatlVFVNTSGRKLSGSIFVIDSITGKDIRHFSAEPSEEEVLFPPNSQFKVEKVVASEQEKK 98 
                     78889999998888887555555667789*****************************************99764433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (121 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       505  (0.0281667); expected 358.6 (0.02)
Passed bias filter:                      376  (0.0209716); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.35u 0.25s 00:00:00.60 Elapsed: 00:00:00.39
# Mc/sec: 926.25
//
Query:       KOO23545.1  [L=115]
Description: hypothetical protein Ctob_002524 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (115 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       335  (0.0186848); expected 358.6 (0.02)
Passed bias filter:                      315  (0.0175693); expected 358.6 (0.02)
Passed Vit filter:                        11  (0.000613531); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.24s 00:00:00.62 Elapsed: 00:00:00.40
# Mc/sec: 852.63
//
Query:       KOO23546.1  [L=613]
Description: ABC2 type transporter superfamily protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.2e-26   93.4  11.6    1.2e-26   93.4  11.6    1.5  2  ABC2_membrane    ABC-2 type transporter
    1.1e-23   84.2   0.0    1.8e-23   83.6   0.0    1.3  1  ABC_tran         ABC transporter
    1.5e-07   31.5   0.1     0.0064   16.3   0.0    2.2  2  AAA_21           AAA domain, putative AbiEii toxin, Type IV T
      0.001   19.0   0.0     0.0018   18.2   0.0    1.3  1  RsgA_GTPase      RsgA GTPase
     0.0045   16.7   0.2      0.012   15.4   0.2    1.6  1  AAA_29           P-loop containing region of AAA domain
      0.009   16.5   0.1      0.014   15.9   0.1    1.2  1  AAA_23           AAA domain
  ------ inclusion threshold ------
      0.019   15.3   0.2      0.046   14.1   0.2    1.7  1  AAA_16           AAA ATPase domain
      0.021   14.3   0.0        1.5    8.2   0.0    2.1  2  SMC_N            RecF/RecN/SMC N terminal domain
      0.032   14.0   0.3      0.067   12.9   0.3    1.6  1  AAA_30           AAA domain
       0.09   12.3   0.1       0.19   11.3   0.1    1.5  1  AAA_25           AAA domain
        0.1   12.9   0.1       0.28   11.4   0.1    1.7  1  AAA_22           AAA domain
       0.34   10.0  15.2       0.96    8.5  14.9    1.7  1  ABC2_membrane_3  ABC-2 family transporter protein


Domain annotation for each model (and alignments):
>> ABC2_membrane  ABC-2 type transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   93.4  11.6   8.1e-30   1.2e-26      46     210 .]     325     491 ..     310     491 .. 0.95
   2 ?   -3.3   0.3       3.4     5e+03      60      88 ..     582     610 ..     577     612 .. 0.55

  Alignments for each domain:
  == domain 1  score: 93.4 bits;  conditional E-value: 8.1e-30
  ABC2_membrane  46 sedglnrpgllffsvlflafsaltsvapvferergvlerelvsplyslsayvlakvlvelpvsllqalifllivyflvgldls..rfflfllllll 139
                      d++++ g+lf+ v++ ++  l  +++ f+  r +l rel+++ ysl +y++a++++++  +++ ++++ l vyf+vgl l+  +f++f   l+l
     KOO23546.1 325 YGDIFSITGALFMCVTTSTLEVLLDTVLEFPLARALLLRELSNGHYSLRSYYVARTVANFWQACVNTVLVALPVYFMVGLSLTarQFGIFGGCLVL 420
                    44566789****************************************************************************999********* PP

  ABC2_membrane 140 talaasslgllisalapsfedasqlaslvllpllllsGffipidsmpkwlqwiaylnPltyavealrsnlf 210
                    + l++s++g++i++ + ++ da +    vl pll++sG+++p++++p ++ w +y++++ y + +l++n+f
     KOO23546.1 421 LELIGSCIGIMIGCTSNDINDARTQLVPVLAPLLIFSGYVVPYNNIPAYFTWAYYASFFQYSFALLMINEF 491
                    ********************************************************************997 PP

  == domain 2  score: -3.3 bits;  conditional E-value: 3.4
  ABC2_membrane  60 vlflafsaltsvapvferergvlerelvs 88 
                    + +++ +++  +a+ f+ +  vl+r +++
     KOO23546.1 582 ISNYFAILAGYLALAFVATYVVLYRVTTM 610
                    55555555555556666666666665555 PP

>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   83.6   0.0   1.2e-26   1.8e-23       1     137 []      46     195 ..      46     195 .. 0.92

  Alignments for each domain:
  == domain 1  score: 83.6 bits;  conditional E-value: 1.2e-26
                 EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGGB-HHHCCHCEEEE-SS--S-TTSBHHHH................HHHT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx................xxxx RF
    ABC_tran   1 lknvslklkegekvaivGenGaGKStLlkllagllkpteGeilldgkdlkeqeleslrkeigvlpqepqlfpeltvren................esde 83 
                 l++v+ ++++g+++a++G++GaGK+tLl++l g     +G++ +dg++ ++     +rk i ++pq++ l  +l+  e                 ++ +
  KOO23546.1  46 LSDVDATFSPGNLTALMGPSGAGKTTLLSILRGGR-CSMGSMAIDGAPYTT----ATRKLIVTVPQDDVLLAGLSPLEMlvyaahlklpralgraAKLA 139
                 67999**************************9995.79***********99....9******************999999************9999999 PP

                 CHHHHHHHSTTGG.TTCBGESTTS.GGS-HHHHHHHHHHHHHHHTSSEEEEESTTT CS
                 xxxxxxxxxxxxx.xxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  84 eiekalsklglke.lkdtvvkssp.ssLSgGqkqrvalarallkkpkllllDEpta 137
                 +++++ls+l+l++ ++ t+++s + + LSgGq++rv++   ll++p +ll+DEpt+
  KOO23546.1 140 RVQRVLSELNLEGeDQRTRIGSVDaRGLSGGQRKRVSIGLELLTNPAVLLCDEPTS 195
                 9**********98434444544446*****************************96 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.7   0.1   5.5e-05     0.083       1      22 [.      58      79 ..      58      86 .. 0.91
   2 !   16.3   0.0   4.3e-06    0.0064     225     300 ..     155     228 ..     123     231 .. 0.83

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 5.5e-05
      AAA_21  1 lnvliGpNgsGKSnLLdaldll 22
                l++l Gp g+GK++LL +l++ 
  KOO23546.1 58 LTALMGPSGAGKTTLLSILRGG 79
                699****************875 PP

  == domain 2  score: 16.3 bits;  conditional E-value: 4.3e-06
      AAA_21 225 engdgqelparelSdGtkrllalltallralkkgsllliDEpEngLHPkllrrllellkelsr.ngaQviltTHSpl 300
                  +++ + ++ar lS G+++   + + ll  +   ++ll DEp +gL+ k+ + ++++l++ls+  +  v++t H+p+
  KOO23546.1 155 QRTRIGSVDARGLSGGQRKRVSIGLELLTNP---AVLLCDEPTSGLDAKMAADVVGILRALSQqQRRTVVATIHQPS 228
                 4566677889999****99989999999888...************************9999988888888888886 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.2   0.0   1.2e-06    0.0018      84     122 ..      40      79 ..      18     110 .. 0.75

  Alignments for each domain:
  == domain 1  score: 18.2 bits;  conditional E-value: 1.2e-06
                  TTTHTTHHHHHHHCTT.SEEEEECSTTSSHHHHHHHHCTT CS
  RsgA_GTPase  84 aktkegleelkellkd.ktsvlvGqSGvGKStLinallpe 122
                     ++ l+++ + ++  ++++l+G+SG+GK+tL+  l++ 
   KOO23546.1  40 GAARTILSDVDATFSPgNLTALMGPSGAGKTTLLSILRGG 79 
                  455666777777777779*****************99986 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.2   7.8e-06     0.012      15      39 ..      49      73 ..      44      76 .. 0.87

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 7.8e-06
      AAA_29 15 htieidlkgatlltGpsGsGKSTll 39
                 ++++++ + t l+GpsG+GK+Tll
  KOO23546.1 49 VDATFSPGNLTALMGPSGAGKTTLL 73
                567899888***************8 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.1   9.3e-06     0.014      15      39 ..      51      76 ..      43      79 .. 0.82

  Alignments for each domain:
  == domain 1  score: 15.9 bits;  conditional E-value: 9.3e-06
      AAA_23 15 idFsk.gltlItGpNGaGKTTildAi 39
                  Fs+ +lt++ Gp GaGKTT+l  +
  KOO23546.1 51 ATFSPgNLTALMGPSGAGKTTLLSIL 76
                5688868***************9766 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   0.2     3e-05     0.046      12      45 ..      45      77 ..      39     222 .. 0.72

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 3e-05
      AAA_16 12 LlsalervrsgrpelvllsGesGvGKsslvrell 45
                +ls ++++ s++ +l+ l G+sG GK++l+  l+
  KOO23546.1 45 ILSDVDATFSPG-NLTALMGPSGAGKTTLLSILR 77
                455556666665.9****************7665 PP

>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.8   0.0     0.022        33      22      41 ..      53      73 ..      43      77 .. 0.78
   2 ?    8.2   0.0     0.001       1.5     118     203 ..     136     230 ..     130     239 .. 0.77

  Alignments for each domain:
  == domain 1  score: 3.8 bits;  conditional E-value: 0.022
                TTS.SEEEEEESTTSSHHHHH CS
                xxx.xxxxxxxxxxxxxxxxx RF
       SMC_N 22 fsk.sftaivGpNGSGKsnll 41
                fs+ ++ta++Gp G+GK+ ll
  KOO23546.1 53 FSPgNLTALMGPSGAGKTTLL 73
                5542689***********987 PP

  == domain 2  score: 8.2 bits;  conditional E-value: 0.001
                 E-HHHHHHHHHCTT-STT............CS-HHHHHHHHHHHHHHHHCCS--SEEEECTTTTTS-HHHHHHHHHHHHHHCTT.SEEEEE-SSHHHCC CS
                 xxxxxxxxxxxxxxxxxx............xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxx RF
       SMC_N 118 vtkkevsellesagiske............lLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvkkvaellkekskn.aQfivislreemle 203
                 ++ + v+++l++ +++ e             LSgG+++ v++ L +     +p ++ l De  + LD+k  + v+ +l++ s++    +v ++++  ++
  KOO23546.1 136 AKLARVQRVLSELNLEGEdqrtrigsvdarGLSGGQRKRVSIGLELL---TNP-AVLLCDEPTSGLDAKMAADVVGILRALSQQqRRTVVATIHQPSFQ 230
                 5666777777777777777777777777778**********999853...345.45688********************88876366778888777665 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.3   4.5e-05     0.067      15      61 ..      53      99 ..      48     214 .. 0.84

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 4.5e-05
      AAA_30 15 tsgdrvavltGpAGtGKttalkalreaweaaggrviglAptgkaAkv 61
                 s+  +++l Gp G+GKtt+l+ lr    + g   i  Ap  +a ++
  KOO23546.1 53 FSPGNLTALMGPSGAGKTTLLSILRGGRCSMGSMAIDGAPYTTATRK 99
                4566799***************9998777776666666666666655 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.1   0.00013      0.19      31      51 ..      54      74 ..      41      98 .. 0.90

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00013
      AAA_25 31 pagelallaGapgtGKttlal 51
                  g l++l+G++g+GKttl++
  KOO23546.1 54 SPGNLTALMGPSGAGKTTLLS 74
                5699***************86 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.1   0.00019      0.28       6      25 ..      57      76 ..      51     111 .. 0.88

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00019
      AAA_22  6 gilvvtGesGtGKTtllrrl 25
                ++++++G+sG+GKTtll  l
  KOO23546.1 57 NLTALMGPSGAGKTTLLSIL 76
                6899************9766 PP

>> ABC2_membrane_3  ABC-2 family transporter protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.5  14.9   0.00064      0.96     202     317 ..     372     489 ..     362     604 .. 0.79

  Alignments for each domain:
  == domain 1  score: 8.5 bits;  conditional E-value: 0.00064
  ABC2_membrane_3 202 plqywlskilgdflvyllqlllill...lafglgipfgnlglllllfllfglayialgyllsslfknsetaqilifivilllsgffgglfpled 292
                        +y++++ ++ f  + + ++l+ l   +++gl+++  ++g++  +++l  l+ +++g ++++ +++  +a + +++v+ +l++f+g+++p ++
       KOO23546.1 372 LRSYYVARTVANFWQACVNTVLVALpvyFMVGLSLTARQFGIFGGCLVLLELIGSCIGIMIGCTSNDINDARTQLVPVLAPLLIFSGYVVPYNN 465
                      56788888888888888888877776546999666666888888************************************************** PP

  ABC2_membrane_3 293 lpsalkwifsiiPffapglgllrli 317
                      +p ++  ++++  ff+++ +ll ++
       KOO23546.1 466 IPAYFT-WAYYASFFQYSFALLMIN 489
                      **9777.667788888888777776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (613 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       577  (0.0321825); expected 358.6 (0.02)
Passed bias filter:                      410  (0.022868); expected 358.6 (0.02)
Passed Vit filter:                        82  (0.0045736); expected 17.9 (0.001)
Passed Fwd filter:                        13  (0.000725082); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.62u 0.28s 00:00:00.90 Elapsed: 00:00:00.43
# Mc/sec: 4289.43
//
Query:       KOO23547.1  [L=209]
Description: hypothetical protein Ctob_002522 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.1e-13   47.3   2.2    3.4e-06   26.2   0.2    2.4  2  EF-hand_1  EF hand
    1.1e-11   44.9   0.2    1.8e-11   44.3   0.2    1.3  1  EF-hand_7  EF-hand domain pair
    1.5e-10   40.1   0.4    6.9e-06   25.6   0.1    2.4  2  EF-hand_6  EF-hand domain
    1.1e-06   28.4   2.8    8.3e-05   22.4   0.2    2.2  2  EF-hand_8  EF-hand domain pair
    3.3e-05   23.2   1.0      0.014   14.9   0.1    2.5  2  EF-hand_5  EF hand


Domain annotation for each model (and alignments):
>> EF-hand_1  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.2   0.2   9.4e-10   3.4e-06       1      27 [.     133     159 ..     133     161 .. 0.93
   2 !   20.8   0.1   5.2e-08   0.00019       2      25 ..     171     194 ..     170     197 .. 0.91

  Alignments for each domain:
  == domain 1  score: 26.2 bits;  conditional E-value: 9.4e-10
                 HHHHHHHHHTTTSSSEEEHHHHHHHHH CS
   EF-hand_1   1 elkeiFrefDkDgdGkIdfeEfkellk 27 
                 e++++Fr++D D +G+++ +Efk++l 
  KOO23547.1 133 EVRRAFRLLDEDCNGFLSADEFKRILV 159
                 799*********************996 PP

  == domain 2  score: 20.8 bits;  conditional E-value: 5.2e-08
                 HHHHHHHHTTTSSSEEEHHHHHHH CS
   EF-hand_1   2 lkeiFrefDkDgdGkIdfeEfkel 25 
                 +++i++++Dk+g+  I+f Ef el
  KOO23547.1 171 FNRIIQLIDKNGNDVITFAEFAEL 194
                 789******************987 PP

>> EF-hand_7  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.3   0.2     5e-15   1.8e-11       2      70 ..     132     195 ..     131     196 .. 0.93

  Alignments for each domain:
  == domain 1  score: 44.3 bits;  conditional E-value: 5e-15
   EF-hand_7   2 eklkeaFkelDtdgdgyldkeellrllrkifqgagegsklsdeelellfkefDtdkdGvisfdEFlkly 70 
                 +++++aF++lD d +g+l+ +e++r+l         + +++d    ++++ +D+++++vi+f EF +l+
  KOO23547.1 132 TEVRRAFRLLDEDCNGFLSADEFKRILVM-----FNMQSMPDPVFNRIIQLIDKNGNDVITFAEFAELT 195
                 67899********************9998.....6788999999*********************9875 PP

>> EF-hand_6  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.6   0.1   1.9e-09   6.9e-06       1      27 [.     133     159 ..     133     164 .. 0.92
   2 !   12.5   0.0   3.1e-05      0.11       2      24 ..     171     193 ..     170     200 .. 0.87

  Alignments for each domain:
  == domain 1  score: 25.6 bits;  conditional E-value: 1.9e-09
   EF-hand_6   1 elreaFklfDkdgdGkidaeElrkalr 27 
                 e+r+aF+l+D d +G+++a+E++++l 
  KOO23547.1 133 EVRRAFRLLDEDCNGFLSADEFKRILV 159
                 679*********************995 PP

  == domain 2  score: 12.5 bits;  conditional E-value: 3.1e-05
   EF-hand_6   2 lreaFklfDkdgdGkidaeElrk 24 
                 ++++ +l+Dk+g+  i+++E+  
  KOO23547.1 171 FNRIIQLIDKNGNDVITFAEFAE 193
                 5677789*************975 PP

>> EF-hand_8  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.3   0.2   1.6e-05     0.057      27      50 ..     133     156 ..     132     160 .. 0.87
   2 !   22.4   0.2   2.3e-08   8.3e-05       3      52 ..     147     195 ..     146     197 .. 0.94

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 1.6e-05
   EF-hand_8  27 evdilfrefDtdgdGkisfeEFcv 50 
                 ev+  fr++D+d++G +s +EF  
  KOO23547.1 133 EVRRAFRLLDEDCNGFLSADEFKR 156
                 67778*****************86 PP

  == domain 2  score: 22.4 bits;  conditional E-value: 2.3e-08
   EF-hand_8   3 gkItreelrrilrilglkkglseeevdilfrefDtdgdGkisfeEFcvll 52 
                 g ++ +e++ril ++ ++ ++ +  +  ++ ++D +g+ +i+f EF +l 
  KOO23547.1 147 GFLSADEFKRILVMFNMQ-SMPDPVFNRIIQLIDKNGNDVITFAEFAELT 195
                 899************999.8**************************9986 PP

>> EF-hand_5  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.1   3.9e-06     0.014       3      24 ..     136     157 ..     134     159 .. 0.87
   2 !    6.7   0.1    0.0015       5.5       4      24 ..     174     194 ..     171     195 .. 0.85

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 3.9e-06
                 HHHHHH-SS-SSCE-HHHHHHH CS
   EF-hand_5   3 dtFqaiDlNgDGkIskeELktl 24 
                  +F+ +D +  G++s++E+k++
  KOO23547.1 136 RAFRLLDEDCNGFLSADEFKRI 157
                 46******************94 PP

  == domain 2  score: 6.7 bits;  conditional E-value: 0.0015
                 HHHHH-SS-SSCE-HHHHHHH CS
   EF-hand_5   4 tFqaiDlNgDGkIskeELktl 24 
                   q iD+Ng   I++ E+ +l
  KOO23547.1 174 IIQLIDKNGNDVITFAEFAEL 194
                 5799******9*****99876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (209 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       511  (0.0285013); expected 358.6 (0.02)
Passed bias filter:                      467  (0.0260472); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.42u 0.26s 00:00:00.68 Elapsed: 00:00:00.41
# Mc/sec: 1533.72
//
Query:       KOO23548.1  [L=449]
Description: serine carboxypeptidase family protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
      5e-72  243.6   0.0    8.3e-70  236.3   0.0    2.0  1  Peptidase_S10  Serine carboxypeptidase


Domain annotation for each model (and alignments):
>> Peptidase_S10  Serine carboxypeptidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  236.3   0.0   4.6e-74   8.3e-70       5     416 ..      53     448 ..      49     449 .] 0.89

  Alignments for each domain:
  == domain 1  score: 236.3 bits;  conditional E-value: 4.6e-74
                    ST-SSEEEEEEEECSTTTTEEEEEEEEE-SS.GTTTS-EEEEE--TTTB-THHHHHHTTSSEEEE.......TTTTSEEEE-TT-GGGCSEEEEE- CS
  Peptidase_S10   5 etvnfkqysGYldveeeedkslFYwfvesek.npeedplvlWLnGGPGCsSldGlleElGPfrvn.......kdstkkleenpysWnkvanvlfld 92 
                      v+f ++sGY++v+  ++ +lFYwf+ +++  p+++p+++W nGGPGCs+++G+ +E GP+ +        ++ + +l +n y+ n+  + +f+d
     KOO23548.1  53 PVVDFVMESGYINVT--AEDYLFYWFTGATSaAPADAPVLIWSNGGPGCSAMEGATTEGGPMWLWdakasakTGFSGTLSRNAYAFNNQVHSIFVD 146
                    458999*********..89*********999789999************************97765777765444579****************** PP

                    -STTSTT-EETTSSGS--SHHHHHHHHHHHHHHHHHHSTCGTTSEEEEEEETTHHHHHHHHHHHHHTHCCH--S.STSEEEEEEEESE-SBHHHHH CS
  Peptidase_S10  93 qPvGvGFSysntksdvktddeevaedlyefLkkffekfpeyksrdfyitGESYaGhyvPalakeilkknkkekk.kkinLkGlligNglideaeqv 187
                    qP  vG+S  + ++   t+   +++dl++f+  +++ fpe+++r++++++ESY+GhyvPa a+++l+ n  + + ++i Lk+lligNg+++   q 
     KOO23548.1 147 QPRYVGYSTGTGRKV--TSSVAAGKDLVQFILGWYRAFPEHAHRKLILASESYGGHYVPAWANAVLDYNMGRPTaEQIPLKALLIGNGIVNGTVQG 240
                    *********999887..89**************************************************9876679******************** PP

                    CCHHHHHHHTTSSHHHHHHHHHHHHEETHHHHHHHHHHHHHHHHHHHHHHHHHCHCEETTETTSEETTSSEEHHHCTTCCCCTTTTTCHHHHHHHH CS
  Peptidase_S10 188 nsyvefayehgliseeeyeslkkacekkeeleqesekcanllekaskvavekenkglnvynileeccklkaelkksstdaqggedpydesyvekyl 283
                     s  e++  ++li +      +            +    +l+ k+     +      n+y+++  +            +++ g++ y++++ ++++
     KOO23548.1 241 GSFGEYTKAQKLIPDGVPTPTS------------DGAARTLMAKTLG---Y----SPNFYDYRLVD------------QECCGCTSYNYKEWSDWF 305
                    **************88877422............2233445555554...2....56899999888............6789************** PP

                    TSHHHHHHTT--..TTSSS--SB-HHH...HHHCTCCC-SBCHHHHHHHHHTT-EEEEEEETT-STT-HHHHHHHHHH.TECTTECCSCCCEEEET CS
  Peptidase_S10 284 nkkeVrkalhvn..asvkkweecndsv...feqleddisksveeileellesglrvliynGdvDlicnvlgteawikk.lelsgkkefrpwevspk 373
                     ++eV++al+v   a ++ +  c        ++ +d+ + s++  l++ le+g+ v+ y+G++D++cn++g  ++ ++ l + g++++++    p 
     KOO23548.1 306 LRDEVKEALNVCgtAGQEAFGGCAAGCvglPTF-DDHDTFSYSGSLSRALEEGIDVTFYYGKQDTACNWVGALEMANTsLVWGGSTKWANTPFAPL 400
                    ***********9998999*******66685555.5555689999*******************************9988***************** PP

                    TTCESEEEEEEEE.....TTEEEEEETT--SSHHHHSHHHHHHHHHHH CS
  Peptidase_S10 374 kengqvaGyvkey.....enltfltvkgaGHmvPedkpeealqllerf 416
                    k++  + G v++      ++l+f+ + gaGHmvP+d++ +a + l+++
     KOO23548.1 401 KVGHAITGSVRSAsgpngAKLSFYAIDGAGHMVPMDNAAAASEALSSI 448
                    *************8876555*********************9998875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (449 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       303  (0.0169); expected 358.6 (0.02)
Passed bias filter:                      250  (0.0139439); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.51u 0.23s 00:00:00.74 Elapsed: 00:00:00.41
# Mc/sec: 3271.10
//
Query:       KOO23549.1  [L=765]
Description: putative eps3o protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
       0.33   10.5   1.4       0.59    9.6   1.4    1.3  1  MscS_porin  Mechanosensitive ion channel porin domain


Domain annotation for each model (and alignments):
>> MscS_porin  Mechanosensitive ion channel porin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   1.4   3.3e-05      0.59     102     134 ..     629     661 ..     621     668 .. 0.86

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 3.3e-05
  MscS_porin 102 aqlnsqlvelqtrperaqqqltearqrlqeirn 134
                 ++ +s+l+e q+r++++q+++++a+ +lq++++
  KOO23549.1 629 TEVQSRLAEVQSRLAEVQERIFDAYLQLQKVQR 661
                 578999999999999999999999999999987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (765 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       525  (0.0292822); expected 358.6 (0.02)
Passed bias filter:                      356  (0.0198561); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.59u 0.30s 00:00:00.88 Elapsed: 00:00:00.42
# Mc/sec: 5446.99
//
Query:       KOO23550.1  [L=342]
Description: tpr domain-containing protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    9.4e-06   25.7   2.6    2.9e-05   24.1   0.2    2.5  2  TPR_9       Tetratricopeptide repeat
    0.00017   21.3   3.1        1.3    9.0   0.0    3.8  4  TPR_1       Tetratricopeptide repeat
     0.0016   18.4   3.3       0.74   10.1   0.1    3.7  4  TPR_2       Tetratricopeptide repeat
  ------ inclusion threshold ------
      0.018   15.1   0.2         15    5.7   0.0    3.6  4  Fis1_TPR_C  Fis1 C-terminal tetratricopeptide repeat
       0.13   12.4   9.7       0.25   11.4   0.0    3.9  4  MIT         MIT (microtubule interacting and transport) domai
       0.22   11.8   8.3        2.2    8.7   0.1    4.3  5  TPR_8       Tetratricopeptide repeat
       0.24   11.9   3.4       0.49   10.9   0.1    2.9  4  TPR_19      Tetratricopeptide repeat
       0.98   10.4   4.0        6.6    7.8   0.3    3.5  3  TPR_14      Tetratricopeptide repeat
          1   10.1   5.1        1.8    9.4   0.1    3.6  3  TPR_6       Tetratricopeptide repeat
        1.4    9.6   4.7        2.4    8.9   0.2    3.1  4  TPR_16      Tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> TPR_9  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.7   0.2      0.32   5.8e+02      41      54 ..      52      65 ..      49      66 .. 0.88
   2 !   24.1   0.2   1.6e-08   2.9e-05       5      72 ..     226     301 ..     223     303 .. 0.86

  Alignments for each domain:
  == domain 1  score: 0.7 bits;  conditional E-value: 0.32
       TPR_9 41 qlGclsaAladLea 54
                q+++l++Al+dL+a
  KOO23550.1 52 QREQLAVALQDLDA 65
                8999*******985 PP

  == domain 2  score: 24.1 bits;  conditional E-value: 1.6e-08
       TPR_9   5 aireedweralavverllllaPddpeerrdRGlllaqlGclsaAladLeayl........alapdapdaeairaqL 72 
                 a+  +d+  ++  ++ +l l+P d   ++ R+l++ +lG +++A adLe  l        ++a++a +  a+r++L
  KOO23550.1 226 ALKTRDYTLCIFSCDKVLELQPGDTKSLYRRALANWRLGEVEKASADLESILkarvneynEVAESATAKKAARKLL 301
                 67778888888899**************************************997777777777777777777776 PP

>> TPR_1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.5   0.1      0.16   2.9e+02       9      25 ..     175     191 ..     174     193 .. 0.82
   2 !    8.9   0.0   0.00079       1.4      10      33 ..     225     248 ..     217     249 .. 0.87
   3 !    9.0   0.0   0.00073       1.3       2      28 ..     251     277 ..     250     280 .. 0.89
   4 ?   -2.6   0.1       3.2   5.7e+03      13      20 ..     328     335 ..     328     335 .. 0.82

  Alignments for each domain:
  == domain 1  score: 1.5 bits;  conditional E-value: 0.16
                 HHHHHTT-HHHHHHHHH CS
       TPR_1   9 nayfklgkydeAleyye 25 
                 n  fk ++y  Al  y 
  KOO23550.1 175 NHKFKEKNYHAALTMYM 191
                 556999*******9985 PP

  == domain 2  score: 8.9 bits;  conditional E-value: 0.00079
                 HHHHTT-HHHHHHHHHHHHHHSTT CS
       TPR_1  10 ayfklgkydeAleyyekALelnPn 33 
                 a +k  +y  ++  ++k+Lel+P 
  KOO23550.1 225 AALKTRDYTLCIFSCDKVLELQPG 248
                 678899*****************7 PP

  == domain 3  score: 9.0 bits;  conditional E-value: 0.00073
                 HHHHHHHHHHHHTT-HHHHHHHHHHHH CS
       TPR_1   2 kalynlGnayfklgkydeAleyyekAL 28 
                 k+ly++++a  +lg+ ++A ++ e  L
  KOO23550.1 251 KSLYRRALANWRLGEVEKASADLESIL 277
                 689****************99998766 PP

  == domain 4  score: -2.6 bits;  conditional E-value: 3.2
                 HTT-HHHH CS
       TPR_1  13 klgkydeA 20 
                 klg y++A
  KOO23550.1 328 KLGLYEKA 335
                 68899998 PP

>> TPR_2  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.1         2   3.5e+03      12      24 ..     178     190 ..     173     193 .. 0.71
   2 !    6.8   0.0    0.0047       8.5       8      34 .]     223     249 ..     218     249 .. 0.90
   3 !   10.1   0.1   0.00041      0.74       3      29 ..     252     278 ..     250     280 .. 0.88
   4 ?   -3.4   0.1       8.7   1.6e+04      20      29 ..     293     302 ..     292     304 .. 0.65

  Alignments for each domain:
  == domain 1  score: -1.4 bits;  conditional E-value: 2
       TPR_2  12 yklgdyeeAleaf 24 
                 +k ++y  Al  +
  KOO23550.1 178 FKEKNYHAALTMY 190
                 7788888887655 PP

  == domain 2  score: 6.8 bits;  conditional E-value: 0.0047
       TPR_2   8 GlayyklgdyeeAleafekAleldPnn 34 
                 + a++k  dy  ++  ++k+lel P++
  KOO23550.1 223 AGAALKTRDYTLCIFSCDKVLELQPGD 249
                 558899*******************86 PP

  == domain 3  score: 10.1 bits;  conditional E-value: 0.00041
       TPR_2   3 alynlGlayyklgdyeeAleafekAle 29 
                  ly+++la ++lg+ e+A +++e  l+
  KOO23550.1 252 SLYRRALANWRLGEVEKASADLESILK 278
                 69****************999987665 PP

  == domain 4  score: -3.4 bits;  conditional E-value: 8.7
       TPR_2  20 AleafekAle 29 
                 A++a +k l+
  KOO23550.1 293 AKKAARKLLR 302
                 6666666665 PP

>> Fis1_TPR_C  Fis1 C-terminal tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.0       3.3   5.9e+03      34      50 ..     204     220 ..     202     223 .. 0.84
   2 ?    5.3   0.0     0.011        21       8      33 ..     223     248 ..     221     251 .. 0.90
   3 ?    5.7   0.0    0.0085        15       3      29 ..     252     278 ..     250     289 .. 0.89
   4 ?   -2.3   0.0       2.7   4.9e+03      19      28 ..     292     301 ..     278     308 .. 0.65

  Alignments for each domain:
  == domain 1  score: -2.6 bits;  conditional E-value: 3.3
                 -HHHHHHHHHHHHHHHH CS
  Fis1_TPR_C  34 nrQaqsLkeliedkikk 50 
                 n Q q+L   ++ +i+k
  KOO23550.1 204 NDQDQTLLDDVHVQIRK 220
                 99999999999999988 PP

  == domain 2  score: 5.3 bits;  conditional E-value: 0.011
                 HHHHHHHT-HHHHHHHHHHHHHHTTS CS
  Fis1_TPR_C   8 AlGhyklgeYseArryvdalLeiEPe 33 
                 A + +k ++Y+ +   +d +Le++P+
  KOO23550.1 223 AGAALKTRDYTLCIFSCDKVLELQPG 248
                 66889********************7 PP

  == domain 3  score: 5.7 bits;  conditional E-value: 0.0085
                 HHHHHHHHHHHHT-HHHHHHHHHHHHH CS
  Fis1_TPR_C   3 clYylAlGhyklgeYseArryvdalLe 29 
                  lY  Al++ +lge ++A   ++ +L+
  KOO23550.1 252 SLYRRALANWRLGEVEKASADLESILK 278
                 6999*************9988888876 PP

  == domain 4  score: -2.3 bits;  conditional E-value: 2.7
                 HHHHHHHHHH CS
  Fis1_TPR_C  19 eArryvdalL 28 
                 +A++ ++ lL
  KOO23550.1 292 TAKKAARKLL 301
                 5666666666 PP

>> MIT  MIT (microtubule interacting and transport) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   0.1       0.8   1.4e+03      34      51 ..      13      28 ..      11      47 .. 0.66
   2 ?   11.4   0.0   0.00014      0.25      16      49 ..     179     211 ..     179     222 .. 0.78
   3 ?    3.9   0.2     0.031        55      25      61 ..     252     289 ..     250     293 .. 0.86
   4 ?    0.1   0.5      0.49   8.7e+02      42      61 ..     293     312 ..     287     316 .. 0.75

  Alignments for each domain:
  == domain 1  score: -0.6 bits;  conditional E-value: 0.8
         MIT 34 Llqalkekneerrellre 51
                + q l+  ++e++e++r 
  KOO23550.1 13 FRQFLQ--EPETQEAIRG 28
                677777..6666666664 PP

  == domain 2  score: 11.4 bits;  conditional E-value: 0.00014
         MIT  16 nagnyeeAlelYkealelLlqalkekneerrell 49 
                 +++ny +Al +Y +++  + + ++ +n++++ ll
  KOO23550.1 179 KEKNYHAALTMYMQGCVGFEMYCA-TNDQDQTLL 211
                 589********************9.344555544 PP

  == domain 3  score: 3.9 bits;  conditional E-value: 0.031
         MIT  25 elYkealelLlqalke.kneerrellrekieeYleRae 61 
                 +lY+ al  + ++  e  ++     l+++++eY e ae
  KOO23550.1 252 SLYRRALANWRLGEVEkASADLESILKARVNEYNEVAE 289
                 59***********998555578999********99877 PP

  == domain 4  score: 0.1 bits;  conditional E-value: 0.49
         MIT  42 neerrellrekieeYleRae 61 
                 +++   +l ++iee  eRae
  KOO23550.1 293 AKKAARKLLRQIEESEERAE 312
                 45667788889999999998 PP

>> TPR_8  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.7   0.1        10   1.8e+04      15      26 ..      28      39 ..      28      40 .. 0.86
   2 ?    0.5   0.1      0.53   9.5e+02      12      26 ..     178     192 ..     176     194 .. 0.87
   3 ?    4.7   0.0     0.023        41      11      33 ..     226     248 ..     223     249 .. 0.89
   4 ?    8.7   0.1    0.0012       2.2       2      29 ..     251     278 ..     250     280 .. 0.90
   5 ?   -2.6   0.2       5.2   9.4e+03      18      28 ..     291     301 ..     284     305 .. 0.75

  Alignments for each domain:
  == domain 1  score: -3.7 bits;  conditional E-value: 10
                T-HHHHHHHHHH CS
       TPR_8 15 gdyeeAkeyyek 26
                gd e+ ++ ++k
  KOO23550.1 28 GDQEKEIKIMKK 39
                899999999987 PP

  == domain 2  score: 0.5 bits;  conditional E-value: 0.53
                 HHTT-HHHHHHHHHH CS
       TPR_8  12 lklgdyeeAkeyyek 26 
                 +k ++y++A   y++
  KOO23550.1 178 FKEKNYHAALTMYMQ 192
                 5789*******9998 PP

  == domain 3  score: 4.7 bits;  conditional E-value: 0.023
                 HHHTT-HHHHHHHHHHHHHHHHH CS
       TPR_8  11 ylklgdyeeAkeyyekaleldpd 33 
                  lk+ dy   + ++ k+lel+p 
  KOO23550.1 226 ALKTRDYTLCIFSCDKVLELQPG 248
                 57899****************95 PP

  == domain 4  score: 8.7 bits;  conditional E-value: 0.0012
                 CHHHHHHHHHHHTT-HHHHHHHHHHHHH CS
       TPR_8   2 eayynlgsiylklgdyeeAkeyyekale 29 
                 +++y+ +++ + lg+ e+A + +e  l+
  KOO23550.1 251 KSLYRRALANWRLGEVEKASADLESILK 278
                 689*******************998777 PP

  == domain 5  score: -2.6 bits;  conditional E-value: 5.2
                 HHHHHHHHHHH CS
       TPR_8  18 eeAkeyyekal 28 
                   Ak++ +k l
  KOO23550.1 291 ATAKKAARKLL 301
                 56888888877 PP

>> TPR_19  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.0         9   1.6e+04      13      25 ..     110     122 ..     108     125 .. 0.49
   2 ?   -3.8   0.0        10   1.8e+04       3      14 ..     179     190 ..     178     192 .. 0.70
   3 ?   10.9   0.1   0.00027      0.49      14      61 ..     239     287 ..     226     294 .. 0.84
   4 ?    0.2   0.1      0.61   1.1e+03       9      26 ..     296     312 ..     295     323 .. 0.49

  Alignments for each domain:
  == domain 1  score: -3.5 bits;  conditional E-value: 9
      TPR_19  13 lleqalqedpkna 25 
                 +le++ +e ++++
  KOO23550.1 110 MLERVRDELNNDP 122
                 4555555544444 PP

  == domain 2  score: -3.8 bits;  conditional E-value: 10
      TPR_19   3 aegdyaeAlall 14 
                 +e++y +Al ++
  KOO23550.1 179 KEKNYHAALTMY 190
                 577888888766 PP

  == domain 3  score: 10.9 bits;  conditional E-value: 0.00027
      TPR_19  14 leqalqedpknaearllLAeallalgqldeAealLdalpeedpdd.ary 61 
                   ++l+  p++   +++ A a + lg++++A a L+ ++++  ++  ++
  KOO23550.1 239 CDKVLELQPGDTKSLYRRALANWRLGEVEKASADLESILKARVNEyNEV 287
                 67899***********************************999954544 PP

  == domain 4  score: 0.2 bits;  conditional E-value: 0.61
      TPR_19   9 eAlalleqalqedpknae 26 
                 +A +ll+q+ +e+ + ae
  KOO23550.1 296 AARKLLRQI-EESEERAE 312
                 566666664.44444333 PP

>> TPR_14  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.3   0.0      0.97   1.7e+03      12      40 ..     227     257 ..     222     260 .. 0.64
   2 ?    7.8   0.3    0.0037       6.6       4      30 ..     253     279 ..     250     289 .. 0.88
   3 ?    1.5   0.8      0.41   7.4e+02      19      43 ..     296     320 ..     277     322 .. 0.56

  Alignments for each domain:
  == domain 1  score: 0.3 bits;  conditional E-value: 0.97
      TPR_14  12 lalGdpdeAiallrralalaPdda..eawll 40 
                 l  +d+   i  ++++l+l+P+d    ++++
  KOO23550.1 227 LKTRDYTLCIFSCDKVLELQPGDTksLYRRA 257
                 5566777777788899999998852134444 PP

  == domain 2  score: 7.8 bits;  conditional E-value: 0.0037
      TPR_14   4 llalaeallalGdpdeAiallrralal 30 
                 l+++a a ++lG+ ++A a l+ +l++
  KOO23550.1 253 LYRRALANWRLGEVEKASADLESILKA 279
                 799*****************9999986 PP

  == domain 3  score: 1.5 bits;  conditional E-value: 0.41
      TPR_14  19 eAiallrralalaPddaeawlllaq 43 
                 +A++llr++ +     + + +++a+
  KOO23550.1 296 AARKLLRQIEESEERAELVEIRMAR 320
                 4555555554433333344466665 PP

>> TPR_6  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.0       5.8     1e+04      15      23 ..     182     190 ..     178     193 .. 0.57
   2 ?    9.4   0.1     0.001       1.8       2      28 ..     252     278 ..     251     280 .. 0.92
   3 ?    0.6   0.2      0.64   1.2e+03      15      28 ..     289     302 ..     284     303 .. 0.79

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 5.8
                 HHHHHHHHH CS
       TPR_6  15 dtdkAleal 23 
                 ++ +Al+++
  KOO23550.1 182 NYHAALTMY 190
                 666666655 PP

  == domain 2  score: 9.4 bits;  conditional E-value: 0.001
                 HHHHHHHHHHHHHHHHHHHHHHHHHHH CS
       TPR_6   2 AlyklalsyrklgdtdkAlealerlik 28 
                 +ly++al+  +lg+ +kA + le+++k
  KOO23550.1 252 SLYRRALANWRLGEVEKASADLESILK 278
                 79******************9999987 PP

  == domain 3  score: 0.6 bits;  conditional E-value: 0.64
                 HHHHHHHHHHHHHH CS
       TPR_6  15 dtdkAlealerlik 28 
                 ++++A++a ++l++
  KOO23550.1 289 ESATAKKAARKLLR 302
                 67899999999987 PP

>> TPR_16  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.0       8.5   1.5e+04       7      20 ..     177     190 ..     174     190 .. 0.69
   2 ?   -1.4   0.0       2.1   3.8e+03      27      51 ..     214     233 ..     208     234 .. 0.71
   3 ?    8.9   0.2    0.0013       2.4      22      61 ..     241     277 ..     221     283 .. 0.80
   4 ?    0.5   0.7      0.54   9.7e+02      15      45 ..     296     325 ..     290     341 .. 0.73

  Alignments for each domain:
  == domain 1  score: -3.3 bits;  conditional E-value: 8.5
      TPR_16   7 alragdyddAaaal 20 
                  ++ ++y +A+ ++
  KOO23550.1 177 KFKEKNYHAALTMY 190
                 56778888888766 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 2.1
      TPR_16  27 dpssPdaaeAllllgdaalrqgrla 51 
                       +++ + + + aal+  +++
  KOO23550.1 214 V-----HVQIRKNTAGAALKTRDYT 233
                 3.....8888888888888888875 PP

  == domain 3  score: 8.9 bits;  conditional E-value: 0.0013
      TPR_16  22 aalkrdpssPdaaeAllllgdaalrqgrlaeAaalyraal 61 
                  +l+++   P +  +l+ +++a +r+g++++A a +++ l
  KOO23550.1 241 KVLELQ---PGDTKSLYRRALANWRLGEVEKASADLESIL 277
                 678999...99999****************9976666655 PP

  == domain 4  score: 0.5 bits;  conditional E-value: 0.54
      TPR_16  15 dAaaaleaalkrdpssPdaaeAllllgdaal 45 
                 +A+++l++  ++  +    +e ++++++a+ 
  KOO23550.1 296 AARKLLRQIEESEERAE-LVEIRMARALAFE 325
                 57888888888884444.8999999999987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (342 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1053  (0.0587317); expected 358.6 (0.02)
Passed bias filter:                      504  (0.0281109); expected 358.6 (0.02)
Passed Vit filter:                        48  (0.00267723); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.50u 0.24s 00:00:00.74 Elapsed: 00:00:00.41
# Mc/sec: 2511.92
//
Query:       KOO23551.1  [L=909]
Description: hypothetical protein Ctob_002513 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (909 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       580  (0.0323498); expected 358.6 (0.02)
Passed bias filter:                      312  (0.017402); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.60u 0.26s 00:00:00.86 Elapsed: 00:00:00.41
# Mc/sec: 6713.38
//
Query:       KOO23552.1  [L=248]
Description: ubiquitin carboxyl-terminal hydrolase 8 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    4.5e-34  118.1   0.0    5.1e-34  117.9   0.0    1.0  1  UCH           Ubiquitin carboxyl-terminal hydrolase
    2.5e-15   56.9   0.0    3.2e-15   56.5   0.0    1.1  1  UCH_1         Ubiquitin carboxyl-terminal hydrolase
  ------ inclusion threshold ------
      0.032   14.4   2.8       0.32   11.3   2.5    2.3  2  zf-4CXXC_R1   Zinc-finger domain of monoamine-oxidase A repre
      0.046   13.6   0.2      0.097   12.5   0.2    1.5  1  ADD_ATRX      Cysteine Rich ADD domain
       0.25   11.1   0.3       0.25   11.1   0.3    3.0  3  Rubredoxin_2  Rubredoxin metal binding domain


Domain annotation for each model (and alignments):
>> UCH  Ubiquitin carboxyl-terminal hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  117.9   0.0   1.4e-37   5.1e-34      92     238 ..       2     248 .]       1     248 [] 0.95

  Alignments for each domain:
  == domain 1  score: 117.9 bits;  conditional E-value: 1.4e-37
                 GTSSSTCEHHHHHHHHHHHHHHHHCC.....................HCCCHHHHHHCCCTTSHHHHHH-EEEEE........................ CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxx.....................xxxxxxxxxxxxxxxxxxxxxxxxxxxx........................ RF
         UCH  92 fsgykqqDaqEflaflLdqlhedlnr.....................evaeekwkkhlkrndslitdlfegqlks........................ 145
                 fsg++q+DaqE+ +flLd+lhedlnr                     +va+e w + lkr +s+i+dlf+gqlks                        
  KOO23552.1   2 FSGNEQHDAQELATFLLDGLHEDLNRvvgkkpyiedlgelkegqdeeRVAAESWGNYLKRDRSVIVDLFQGQLKStvtctecgcqsskfeafmylslpv 100
                 99*********************************************99************************************************** PP

                 ............................................EEEEEEB-SEEEEEEESEEETEE..EEE--SEEB--S.EEE-GGGBSS-BTTS-T CS
                 ............................................xxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxx.xxxxxxxxxxxxxxxxx RF
         UCH 146 ............................................klklkrlPeiLiihlkRfsynss..ksKlntkvefpe.eldlssylaeekkkkte 197
                                                             + +l+++P+ L++hlkRf  n +    K  + +  p+  ldls y+  +     +
  KOO23552.1 101 pppskdgksltlddclreftkeeqldpenmwrcprckdfrqaskRFELWKMPPLLLVHLKRFCSNGRgqHVKRAQAIITPLnGLDLSAYTGGSLGV--S 197
                 ****************************************************************9999999*********868*****99855555..5 PP

                 CS-BEEEEEEEEEESCTTSEEEEEEEE..........CTTTTEEEEEETTE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxx..........xxxxxxxxxxxxxx RF
         UCH 198 ekkkYeLiavvvHsGslssGHYvayik..........nekngkWykydDet 238
                 +  +Y+L+a  +H+G++++GHY+a+++          + +++kW ++dDe+
  KOO23552.1 198 SAATYSLYATCNHHGTMHRGHYTAHCRgagfggsqgdAADRSKWHTLDDEK 248
                 6788***********************8888877776666777******85 PP

>> UCH_1  Ubiquitin carboxyl-terminal hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.5   0.0   8.9e-19   3.2e-15     102     317 ..      10     246 ..       3     248 .] 0.80

  Alignments for each domain:
  == domain 1  score: 56.5 bits;  conditional E-value: 8.9e-19
                 xxxxxxxxxxxxxxxxxxxxxxx...........................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       UCH_1 102 iqsfnrflldqlekelketkkns...........................seeesaieqllgtkaettirclkCgseksrksstlvldlkyPkpsnekk 173
                  q++ +flld l+++l++   ++                           +++ s i +l++ ++++t++c++Cg ++s+ + ++ l+l    p  +k+
  KOO23552.1  10 AQELATFLLDGLHEDLNRVVGKKpyiedlgelkegqdeervaaeswgnylKRDRSVIVDLFQGQLKSTVTCTECGCQSSKFEAFMYLSLPV--PPPSKD 106
                 58899*************998889**************************999999******************************99955..444578 PP

                 xxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxx.xxxx..xxxxxxxxxxxxxxxxxxxxxxxx RF
       UCH_1 174 eakvtfasilksslerektt...rawCekCkryqpteqrktvknlPpvLalnakle.eeeelelwktk.nwlp..leiklsldedknleeklkeereka 265
                  ++ t++++l+++ ++e+        C++Ck + + ++r  + ++Pp+L++++k++ ++   ++ k+    +   + ++ls + ++            +
  KOO23552.1 107 GKSLTLDDCLREFTKEEQLDpenMWRCPRCKDFRQASKRFELWKMPPLLLVHLKRFcSNGRGQHVKRAqAIITplNGLDLSAYTGG------------S 193
                 8889************7754221556******************************777544444443133332222222222222............3 PP

                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxx RF
       UCH_1 266 kaekeikvYeLqsvvvhigdskesghLvslvkvaekeler..dppesqWylFND 317
                    ++ ++Y+L ++  h g + ++gh+ ++++ a    ++  +++ s+W+ ++D
  KOO23552.1 194 LGVSSAATYSLYATCNHHG-TMHRGHYTAHCRGAGFGGSQgdAADRSKWHTLDD 246
                 34567899*********99.555*********766655555466666****999 PP

>> zf-4CXXC_R1  Zinc-finger domain of monoamine-oxidase A repressor R1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   2.5   8.8e-05      0.32      17      71 ..      74     145 ..      69     174 .. 0.71
   2 ?    0.7   0.0      0.17     6e+02      20      58 ..     205     242 ..     190     244 .. 0.80

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 8.8e-05
  zf-4CXXC_R1  17 letktsCkakeCk...................saklkfCekClknRygeeveevaakkeWvCPkCrgiCncslc 71 
                  l+++++C++  C+                     k     +Cl++   e  e+   ++ W+CP+C+++  +s+ 
   KOO23552.1  74 LKSTVTCTECGCQsskfeafmylslpvpppskDGKSLTLDDCLREFTKE--EQLDPENMWRCPRCKDFRQASKR 145
                  5666777666666666777777777777775544445567888765555..56778899********8877765 PP

  == domain 2  score: 0.7 bits;  conditional E-value: 0.17
  zf-4CXXC_R1  20 ktsCkakeCksaklkfCekClknRygeeveevaakkeWv 58 
                   ++C +++ ++ ++++  +C  + +g +  ++a++++W+
   KOO23552.1 205 YATC-NHHGTMHRGHYTAHCRGAGFGGSQGDAADRSKWH 242
                  4567.4445568999999999999999999999999996 PP

>> ADD_ATRX  Cysteine Rich ADD domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.2   2.7e-05     0.097       7      25 ..      73      91 ..      70     100 .. 0.85

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 2.7e-05
    ADD_ATRX  7 eleeivsCtaCgqqvnhfq 25
                +l+++v+Ct Cg+q  +f+
  KOO23552.1 73 QLKSTVTCTECGCQSSKFE 91
                78899*********98885 PP

>> Rubredoxin_2  Rubredoxin metal binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.0   2.4     0.048   1.7e+02       3      12 ..      80      89 ..      79      91 .. 0.87
   2 ?   11.1   0.3   7.1e-05      0.25      13      22 ..     129     138 ..     126     141 .. 0.84
   3 ?   -1.5   0.1       0.6   2.2e+03      20      27 ..     208     215 ..     207     216 .. 0.84

  Alignments for each domain:
  == domain 1  score: 2.0 bits;  conditional E-value: 0.048
  Rubredoxin_2  3 CsqCGfesak 12
                  C +CG +s+k
    KOO23552.1 80 CTECGCQSSK 89
                  *******998 PP

  == domain 2  score: 11.1 bits;  conditional E-value: 7.1e-05
  Rubredoxin_2  13 wfGrCpsCgs 22 
                    ++rCp C++
    KOO23552.1 129 NMWRCPRCKD 138
                   69******97 PP

  == domain 3  score: -1.5 bits;  conditional E-value: 0.6
  Rubredoxin_2  20 CgsWntlk 27 
                   C++ +t++
    KOO23552.1 208 CNHHGTMH 215
                   99999996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (248 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       622  (0.0346924); expected 358.6 (0.02)
Passed bias filter:                      424  (0.0236488); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.44u 0.25s 00:00:00.69 Elapsed: 00:00:00.42
# Mc/sec: 1790.70
//
Query:       KOO23553.1  [L=537]
Description: putative calcium-binding protein cml23-like protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.3e-12   46.3   1.0    6.8e-06   25.3   0.2    2.8  2  EF-hand_1   EF hand
    4.9e-11   42.9   1.4    2.5e-10   40.7   0.0    2.7  3  EF-hand_7   EF-hand domain pair
    7.5e-11   41.7   0.9    6.8e-08   32.2   0.5    2.8  2  EF-hand_8   EF-hand domain pair
      1e-10   40.7   4.4    0.00025   20.7   0.0    3.6  4  EF-hand_6   EF-hand domain
    8.3e-09   34.6   3.4    4.2e-05   22.9   0.2    2.6  2  EF-hand_5   EF hand
  ------ inclusion threshold ------
        0.1   12.4   0.4         25    4.8   0.0    3.0  3  EF-hand_10  EF hand


Domain annotation for each model (and alignments):
>> EF-hand_1  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.1   0.1   2.1e-07   0.00063       2      26 ..       9      33 ..       8      36 .. 0.93
   2 !   25.3   0.2   2.3e-09   6.8e-06       1      26 [.      44      69 ..      44      72 .. 0.93

  Alignments for each domain:
  == domain 1  score: 19.1 bits;  conditional E-value: 2.1e-07
                HHHHHHHHTTTSSSEEEHHHHHHHH CS
   EF-hand_1  2 lkeiFrefDkDgdGkIdfeEfkell 26
                l+e+F+e+D  g+G++ +eEf++ll
  KOO23553.1  9 LEEAFNELDESGSGTLGIEEFQDLL 33
                79********************997 PP

  == domain 2  score: 25.3 bits;  conditional E-value: 2.3e-09
                HHHHHHHHHTTTSSSEEEHHHHHHHH CS
   EF-hand_1  1 elkeiFrefDkDgdGkIdfeEfkell 26
                e + +Fr +D Dg+G Id+eEf++++
  KOO23553.1 44 EAQAMFRSIDSDGSGGIDKEEFIAFM 69
                5789********************99 PP

>> EF-hand_7  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.7   0.0   8.2e-14   2.5e-10       4      70 ..       9      69 ..       6      70 .. 0.91
   2 ?   -0.4   0.1      0.56   1.7e+03      17      52 ..     366     397 ..     362     402 .. 0.78
   3 ?   -2.9   0.0       3.2   9.7e+03      22      31 ..     503     512 ..     490     518 .. 0.58

  Alignments for each domain:
  == domain 1  score: 40.7 bits;  conditional E-value: 8.2e-14
   EF-hand_7  4 lkeaFkelDtdgdgyldkeellrllrkifqgagegsklsdeelellfkefDtdkdGvisfdEFlkly 70
                l+eaF+elD  g+g l  ee+++ll         g+  s++e +++f+ +D+d++G i+ +EF +++
  KOO23553.1  9 LEEAFNELDESGSGTLGIEEFQDLLF------ACGNTASPDEAQAMFRSIDSDGSGGIDKEEFIAFM 69
                899********************999......555666999************************99 PP

  == domain 2  score: -0.4 bits;  conditional E-value: 0.56
   EF-hand_7  17 gyldkee.llrllrkifqgagegsklsdeelellfke 52 
                 g+l+ ++ l++l++      + +  ++d e++++++ 
  KOO23553.1 366 GFLRTQDaLRHLFEE-----RQNMQIPDPEVRRFVQS 397
                 788888877777776.....88888888888888775 PP

  == domain 3  score: -2.9 bits;  conditional E-value: 3.2
   EF-hand_7  22 eellrllrki 31 
                 +++++l+rk+
  KOO23553.1 503 SDFEQLFRKL 512
                 3333355544 PP

>> EF-hand_8  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.6   0.1   0.00013      0.39      29      53 ..      10      34 ..       7      36 .. 0.89
   2 !   32.2   0.5   2.3e-11   6.8e-08       8      52 ..      27      69 ..      27      69 .. 0.93

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00013
   EF-hand_8 29 dilfrefDtdgdGkisfeEFcvlle 53
                ++ f+e+D+ g+G+++ eEF +ll+
  KOO23553.1 10 EEAFNELDESGSGTLGIEEFQDLLF 34
                567*****************99987 PP

  == domain 2  score: 32.2 bits;  conditional E-value: 2.3e-11
   EF-hand_8  8 eelrril.rilglkkglseeevdilfrefDtdgdGkisfeEFcvll 52
                ee+++ l +  g     s++e++++fr +D dg+G i++eEF++++
  KOO23553.1 27 EEFQDLLfAC-GNT--ASPDEAQAMFRSIDSDGSGGIDKEEFIAFM 69
                7999999777.888..9**************************997 PP

>> EF-hand_6  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.7   0.0   8.2e-08   0.00025       2      27 ..       9      34 ..       8      37 .. 0.92
   2 !   19.4   0.0   2.2e-07   0.00067       2      26 ..      45      69 ..      44      73 .. 0.91
   3 ?   -3.3   0.0       4.2   1.3e+04      17      27 ..     476     486 ..     475     488 .. 0.83
   4 ?   -1.2   0.2      0.91   2.7e+03       2      14 ..     505     517 ..     504     517 .. 0.76

  Alignments for each domain:
  == domain 1  score: 20.7 bits;  conditional E-value: 8.2e-08
   EF-hand_6  2 lreaFklfDkdgdGkidaeElrkalr 27
                l+eaF+++D +g+G++ +eE++++l 
  KOO23553.1  9 LEEAFNELDESGSGTLGIEEFQDLLF 34
                789********************997 PP

  == domain 2  score: 19.4 bits;  conditional E-value: 2.2e-07
   EF-hand_6  2 lreaFklfDkdgdGkidaeElrkal 26
                 ++ F+ +D dg+G id+eE+++++
  KOO23553.1 45 AQAMFRSIDSDGSGGIDKEEFIAFM 69
                5789******************998 PP

  == domain 3  score: -3.3 bits;  conditional E-value: 4.2
   EF-hand_6  17 idaeElrkalr 27 
                 ++  ++ kal+
  KOO23553.1 476 LTGLDILKALK 486
                 78899999998 PP

  == domain 4  score: -1.2 bits;  conditional E-value: 0.91
   EF-hand_6   2 lreaFklfDkdgd 14 
                 ++++F+++ k+g+
  KOO23553.1 505 FEQLFRKLFKEGN 517
                 7788999888876 PP

>> EF-hand_5  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.0   0.3   3.8e-05      0.11       1      24 [.       9      32 ..       9      33 .. 0.91
   2 !   22.9   0.2   1.4e-08   4.2e-05       2      25 .]      46      69 ..      45      69 .. 0.93

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 3.8e-05
                HHHHHHHH-SS-SSCE-HHHHHHH CS
   EF-hand_5  1 lkdtFqaiDlNgDGkIskeELktl 24
                l+++F+++D  g+G++ +eE++ l
  KOO23553.1  9 LEEAFNELDESGSGTLGIEEFQDL 32
                5778*****************987 PP

  == domain 2  score: 22.9 bits;  conditional E-value: 1.4e-08
                HHHHHHH-SS-SSCE-HHHHHHHH CS
   EF-hand_5  2 kdtFqaiDlNgDGkIskeELktlv 25
                +++F+ iD +g+G I+keE+ +++
  KOO23553.1 46 QAMFRSIDSDGSGGIDKEEFIAFM 69
                579*****************9986 PP

>> EF-hand_10  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.1   0.2     0.014        42      25      44 ..      11      30 ..       9      34 .. 0.84
   2 ?    4.8   0.0    0.0084        25      23      47 ..      45      69 ..      41      72 .. 0.92
   3 ?   -2.8   0.0       2.1   6.2e+03       4      18 ..     223     237 ..     222     238 .. 0.84

  Alignments for each domain:
  == domain 1  score: 4.1 bits;  conditional E-value: 0.014
  EF-hand_10 25 kLFkkcDkSksgrLegeEie 44
                + F + D+S sg+L  eE++
  KOO23553.1 11 EAFNELDESGSGTLGIEEFQ 30
                56999*********988876 PP

  == domain 2  score: 4.8 bits;  conditional E-value: 0.0084
  EF-hand_10 23 AekLFkkcDkSksgrLegeEieeFy 47
                A+ +F+  D   sg ++ eE+  F+
  KOO23553.1 45 AQAMFRSIDSDGSGGIDKEEFIAFM 69
                899******************9996 PP

  == domain 3  score: -2.8 bits;  conditional E-value: 2.1
  EF-hand_10   4 fkEvkrlLreiNiev 18 
                 +k  k+ L+  N+++
  KOO23553.1 223 YKPFKDALKAANLDM 237
                 6677999*****998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (537 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       616  (0.0343577); expected 358.6 (0.02)
Passed bias filter:                      559  (0.0311785); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.57u 0.28s 00:00:00.85 Elapsed: 00:00:00.43
# Mc/sec: 3729.45
//
Query:       KOO23554.1  [L=224]
Description: hypothetical protein Ctob_002516 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    7.6e-08   32.6  11.4    1.3e-07   31.8  11.4    1.4  1  zf-RING_2     Ring finger domain
    6.7e-06   25.9  10.9    1.2e-05   25.0  10.9    1.4  1  zf-C3HC4      Zinc finger, C3HC4 type (RING finger)
    4.1e-05   23.5   9.6    7.4e-05   22.7   9.6    1.5  1  zf-RING_UBOX  RING-type zinc-finger
    5.6e-05   23.0   9.5    9.2e-05   22.3   9.5    1.4  1  zf-RING_5     zinc-RING finger domain
    0.00026   20.7   7.3     0.0017   18.0   7.3    2.2  1  zf-RING_11    RING-like zinc finger
  ------ inclusion threshold ------
      0.011   15.6  14.3      0.053   13.4  14.3    2.0  1  zf-C3HC4_2    Zinc finger, C3HC4 type (RING finger)
      0.032   14.5   1.8      0.042   14.1   1.8    1.2  1  FYVE_2        FYVE-type zinc finger
      0.035   14.4  12.6      0.087   13.1  12.6    1.6  1  zf-rbx1       RING-H2 zinc finger domain
      0.039   13.8   5.7       0.12   12.3   5.7    1.8  1  zf-RING_6     zf-RING of BARD1-type protein
       0.13   12.3   7.4       0.31   11.1   7.3    1.6  1  zf-ANAPC11    Anaphase-promoting complex subunit 11 RING-H2 f
       0.14   12.1  12.0       0.47   10.4  12.0    1.8  1  zf-C3HC4_3    Zinc finger, C3HC4 type (RING finger)
       0.34   10.7   8.4        0.7    9.7   8.4    1.5  1  zf-RING_4     RING/Ubox like zinc-binding domain
          1    9.2   5.0        1.8    8.5   5.0    1.4  1  zf-Nse        Zinc-finger of the MIZ type in Nse subunit
        1.5    8.8  10.2        3.5    7.6  10.2    1.6  1  Prok-RING_4   Prokaryotic RING finger family 4
        1.6    8.9  12.9        6.6    6.9  13.0    2.1  1  zf-C3H2C3     Zinc-finger
        4.8    7.2   8.3        5.1    7.1   1.3    3.0  3  zf-HIT        HIT zinc finger
        8.4    6.4  15.3        1.6    8.7  11.0    2.1  2  PHD           PHD-finger


Domain annotation for each model (and alignments):
>> zf-RING_2  Ring finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.8  11.4   1.2e-10   1.3e-07       3      44 .]     166     214 ..     164     214 .. 0.86

  Alignments for each domain:
  == domain 1  score: 31.8 bits;  conditional E-value: 1.2e-10
   zf-RING_2   3 CpICleelssads......vlllpCgHvfhreClerwlrssst.CPlCr 44 
                 C+IC e+l+ a +      v++lpC+H+fhr+Cl++ +++ +  CP+Cr
  KOO23554.1 166 CSICIEPLHAAVTglggspVCALPCKHIFHRKCLTECVKRGHWtCPNCR 214
                 ********988888889888899*************76555558****9 PP

>> zf-C3HC4  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.0  10.9   1.2e-08   1.2e-05       1      41 []     166     213 ..     166     213 .. 0.98

  Alignments for each domain:
  == domain 1  score: 25.0 bits;  conditional E-value: 1.2e-08
                 -TTT-S--SS-E.........E-TTS--B-CHHHHHHHHCTSSB--TTT CS
    zf-C3HC4   1 CpiCleeakepn........elleCkHsfCskCirkilksrkkvkCPlC 41 
                 C+iC e +  ++         +l+CkH f++kC+++++k r++ +CP+C
  KOO23554.1 166 CSICIEPLHAAVtglggspvCALPCKHIFHRKCLTECVK-RGHWTCPNC 213
                 **********99***************************.********* PP

>> zf-RING_UBOX  RING-type zinc-finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.7   9.6     7e-08   7.4e-05       1      39 []     166     211 ..     166     211 .. 0.93

  Alignments for each domain:
  == domain 1  score: 22.7 bits;  conditional E-value: 7e-08
  zf-RING_UBOX   1 CpIClelft........dPlv..lpCGHtFCreClwelskslegafkCP 39 
                   C+IC e+++         P v  lpC H+F+r+Cl  +   ++g+ +CP
    KOO23554.1 166 CSICIEPLHaavtglggSP-VcaLPCKHIFHRKCL--TECVKRGHWTCP 211
                   *****************99.5556***********..89*********9 PP

>> zf-RING_5  zinc-RING finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.3   9.5   8.7e-08   9.2e-05       2      43 ..     166     214 ..     165     215 .. 0.91

  Alignments for each domain:
  == domain 1  score: 22.3 bits;  conditional E-value: 8.7e-08
   zf-RING_5   2 CnkCfekl......skeekfyltsCgHifCekClkkll.ekeavCpiCr 43 
                 C++C e+l       + ++++ ++C+Hif+ kCl+++      +Cp Cr
  KOO23554.1 166 CSICIEPLhaavtgLGGSPVCALPCKHIFHRKCLTECVkRGHWTCPNCR 214
                 ********98887777788*******************88889*****8 PP

>> zf-RING_11  RING-like zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.0   7.3   1.6e-06    0.0017       2      29 .]     166     199 ..     166     199 .. 0.77

  Alignments for each domain:
  == domain 1  score: 18.0 bits;  conditional E-value: 1.6e-06
  zf-RING_11   2 CsICLeefk......pgqalfilpCsHtFHfkCI 29 
                 CsIC+e++        g  +  lpC+H+FH kC+
  KOO23554.1 166 CSICIEPLHaavtglGGSPVCALPCKHIFHRKCL 199
                 9****99874432333559999***********6 PP

>> zf-C3HC4_2  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4  14.3     5e-05     0.053       2      40 .]     166     213 ..     165     213 .. 0.82

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 5e-05
  zf-C3HC4_2   2 CpiCldmlkdpsvvt........pCgHvfCqkCilrsLeekn.eCPlC 40 
                 C iC++ l  +++          pC+H f++kC+ +  +++   CP C
  KOO23554.1 166 CSICIEPLHAAVTGLggspvcalPCKHIFHRKCLTECVKRGHwTCPNC 213
                 99999999876543355555567*****************999***** PP

>> FYVE_2  FYVE-type zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   1.8     4e-05     0.042      40     108 ..     147     221 ..     123     224 .] 0.79

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 4e-05
      FYVE_2  40 kskrellgnqaklge..thCilCleefkllvnsk...rqC.ldCklnvCkkCsvenkkekvwlCkiCseaRevkk 108
                 +++r ++g+ ++l++  + C  C+e+++  v+      +C l Ck    +kC +e  k+  w C +C+ +  ++ 
  KOO23554.1 147 HARRVVVGSGSELTDedEVCSICIEPLHAAVTGLggsPVCaLPCKHIFHRKCLTECVKRGHWTCPNCRDDLRLRL 221
                 5678888888888652268*******999887543335662679999999*****************99877765 PP

>> zf-rbx1  RING-H2 zinc finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1  12.6   8.3e-05     0.087       3      55 .]     166     214 ..     161     214 .. 0.71

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 8.3e-05
     zf-rbx1   3 CaiCrneleeacieckapgdee......cpvvlGeCgHaFHlhCiskWlkt.rkvCPlcr 55 
                 C+iC ++l++                   pv    C+H FH +C+++ +k+ + +CP cr
  KOO23554.1 166 CSICIEPLHA-----------AvtglggSPVCALPCKHIFHRKCLTECVKRgHWTCPNCR 214
                 4444444444...........33444444666669****************8899****8 PP

>> zf-RING_6  zf-RING of BARD1-type protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   5.7   0.00011      0.12      18      46 ..     182     213 ..     161     217 .. 0.84

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 0.00011
   zf-RING_6  18 repvclggcehifcsncisdcfgsg...cpvc 46 
                   pvc   c+hif   c+++c   g   cp c
  KOO23554.1 182 GSPVCALPCKHIFHRKCLTECVKRGhwtCPNC 213
                 57********************9885556766 PP

>> zf-ANAPC11  Anaphase-promoting complex subunit 11 RING-H2 finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   7.3    0.0003      0.31      19      83 ..     161     219 ..     150     221 .. 0.76

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.0003
                 SSSSB-TTT-SBTTS--TTCSTTTTTS-EEEBTTS-EEEHHHHHHHHHHHSTSSB-TTTSSB--B CS
  zf-ANAPC11  19 asddvcGicrvsfdGtcpsckfpGddcplvlGkckhnfhlhcilkwletetskglcpmcrqtfkl 83 
                  +d+vc ic  + + +           p+    ckh+fh +c+++ +++   +  cp cr+ ++l
  KOO23554.1 161 DEDEVCSICIEPLHAAVTGL--G--GSPVCALPCKHIFHRKCLTECVKR--GHWTCPNCRDDLRL 219
                 46899999988887665332..2..24555667************9976..5679*****98765 PP

>> zf-C3HC4_3  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4  12.0   0.00045      0.47       2      46 ..     163     216 ..     162     219 .. 0.82

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00045
                 GSB-TTTSS.........SBS-EEETTEEEEEE-HHHHHHHHH.TT-B-TTT--B CS
  zf-C3HC4_3   2 deeCviCle.........rprnvvllpCgHlvlCeeCaekllk.rkkkCpiCrrp 46 
                 de C+iC e           + v+ lpC+H+ +  +C++++ k  + +Cp Cr +
  KOO23554.1 163 DEVCSICIEplhaavtglGGSPVCALPCKHI-FHRKCLTECVKrGHWTCPNCRDD 216
                 67899999977666655446778999*****.*********9999********76 PP

>> zf-RING_4  RING/Ubox like zinc-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   8.4   0.00066       0.7       1      45 [.     166     215 ..     166     218 .. 0.79

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 0.00066
   zf-RING_4   1 cplCdeel..detdkdlkp.C..eCgyqiClfCyhrileeeegrCPaCre 45 
                 c +C+e+l    t+    p C  +C++ + + C+++ +++ +  CP+Cr 
  KOO23554.1 166 CSICIEPLhaAVTGLGGSPvCalPCKHIFHRKCLTECVKRGHWTCPNCRD 215
                 677777775555555555446669*************************7 PP

>> zf-Nse  Zinc-finger of the MIZ type in Nse subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.5   5.0    0.0017       1.8      23      56 ..     183     213 ..     162     214 .. 0.84

  Alignments for each domain:
  == domain 1  score: 8.5 bits;  conditional E-value: 0.0017
                 SEEEESSS--EEEHHHHHHHCTTTS-EE-SCCC- CS
      zf-Nse  23 ePvtskkCpHvFEreaIlelikrkktvkCPvagC 56 
                  Pv    C+H+F r+ ++e + ++ +  CP   C
  KOO23554.1 183 SPVCALPCKHIFHRKCLTECV-KRGHWTCPN--C 213
                 4777779**************.889999**7..6 PP

>> Prok-RING_4  Prokaryotic RING finger family 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.6  10.2    0.0033       3.5      11      39 ..     185     216 ..     166     219 .. 0.74

  Alignments for each domain:
  == domain 1  score: 7.6 bits;  conditional E-value: 0.0033
  Prok-RING_4  11 ailepCgHlvCkeCfdskdls...sCPlCqrr 39 
                  +   pC+H++ ++C+ +       +CP C+  
   KOO23554.1 185 VCALPCKHIFHRKCLTECVKRghwTCPNCRDD 216
                  5567***********998555567*****976 PP

>> zf-C3H2C3  Zinc-finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.9  13.0    0.0063       6.6      11      34 ..     184     213 ..     166     214 .. 0.82

  Alignments for each domain:
  == domain 1  score: 6.9 bits;  conditional E-value: 0.0063
   zf-C3H2C3  11 pfvaysCkHlvHakCadeev......CPkC 34 
                 p+ a  CkH++H+kC +e v      CP C
  KOO23554.1 184 PVCALPCKHIFHRKCLTECVkrghwtCPNC 213
                 889999*********998755555558888 PP

>> zf-HIT  HIT zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.8   0.1      0.43   4.6e+02       3       8 ..     164     169 ..     162     174 .. 0.81
   2 ?    2.2   0.1      0.16   1.7e+02      21      29 ..     183     191 ..     181     192 .. 0.86
   3 ?    7.1   1.3    0.0048       5.1       4      20 ..     197     214 ..     195     217 .. 0.83

  Alignments for each domain:
  == domain 1  score: 0.8 bits;  conditional E-value: 0.43
                 -B-TTT CS
      zf-HIT   3 klCgvC 8  
                 ++C++C
  KOO23554.1 164 EVCSIC 169
                 689999 PP

  == domain 2  score: 2.2 bits;  conditional E-value: 0.16
                 -EESSHHHH CS
      zf-HIT  21 tryCSLrCy 29 
                  ++C L C+
  KOO23554.1 183 SPVCALPCK 191
                 699*****7 PP

  == domain 3  score: 7.1 bits;  conditional E-value: 0.0048
                 B-TT.T-SB-SEE-TTT- CS
      zf-HIT   4 lCgv.CgfpakYkCpkCn 20 
                 +C   C + +  +Cp+C+
  KOO23554.1 197 KCLTeCVKRGHWTCPNCR 214
                 57777999*********8 PP

>> PHD  PHD-finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.1       3.8     4e+03      40      46 ..     128     134 ..     117     135 .. 0.58
   2 ?    8.7  11.0    0.0015       1.6       2      51 ..     166     215 ..     165     216 .. 0.69

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 3.8
                 HSSTBSS CS
         PHD  40 pegewlC 46 
                  +++w C
  KOO23554.1 128 WQQDWRC 134
                 2348999 PP

  == domain 2  score: 8.7 bits;  conditional E-value: 0.0015
                 BTTTTS.....TTSTTSCEEEETTTSCEEETTTSSSTHSHHSHHSSTBSSTTTHT CS
         PHD   2 CavCkk.....ksdeeeelvqCdgCkrwfHqkClkppleseekpegewlCekCke 51 
                 C++C +      +  ++  v+   Ck+ fH kCl+  ++      g+w+C++C+ 
  KOO23554.1 166 CSICIEplhaaVTGLGGSPVCALPCKHIFHRKCLTECVK-----RGHWTCPNCRD 215
                 777777655422223445554457**********98855.....678******85 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (224 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       567  (0.0316247); expected 358.6 (0.02)
Passed bias filter:                      341  (0.0190195); expected 358.6 (0.02)
Passed Vit filter:                        48  (0.00267723); expected 17.9 (0.001)
Passed Fwd filter:                        18  (0.00100396); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              17  [number of targets reported over threshold]
# CPU time: 0.44u 0.23s 00:00:00.67 Elapsed: 00:00:00.42
# Mc/sec: 1618.86
//
Query:       KOO23555.1  [L=144]
Description: hypothetical protein Ctob_002517 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.08   12.8   1.6       0.15   12.0   1.6    1.4  1  DUF4605   Domain of unknown function (DUF4605)


Domain annotation for each model (and alignments):
>> DUF4605  Domain of unknown function (DUF4605)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   1.6   8.1e-06      0.15      18      57 ..      81     120 ..      77     122 .. 0.89

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 8.1e-06
     DUF4605  18 wnlgekvvePvvlvlllllllflGlrGlllvgllcfviql 57 
                 w l  + v+ +++v+l ll lf+G   l  +++l +v+ l
  KOO23555.1  81 WRLPARRVQLIHIVILALLALFFGWHILAVAAVLHVVSGL 120
                 6677788999**************************9866 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (144 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       620  (0.0345808); expected 358.6 (0.02)
Passed bias filter:                      390  (0.0217525); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.25s 00:00:00.65 Elapsed: 00:00:00.42
# Mc/sec: 1031.24
//
Query:       KOO23556.1  [L=511]
Description: cleavage and polyadenylation specificity factor subunit 4 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    9.5e-12   45.3   0.0    1.2e-10   41.7   0.0    2.2  1  O-FucT     GDP-fucose protein O-fucosyltransferase
    3.9e-06   26.7   2.3    3.9e-06   26.7   2.3    2.7  2  zf_CCCH_4  Zinc finger domain
    5.4e-05   22.9   3.1    0.00015   21.5   0.7    2.7  2  zf-CCCH_4  CCCH-type zinc finger
    6.1e-05   22.8   8.5    0.00048   20.0   0.6    2.9  3  zf-CCCH    Zinc finger C-x8-C-x5-C-x3-H type (and similar)
    0.00017   22.3   0.6    0.00017   22.3   0.6    1.9  2  Torus      Torus domain
  ------ inclusion threshold ------
      0.042   14.1   3.3      0.096   12.9   3.3    1.5  1  zf-CCCH_3  Zinc-finger containing family


Domain annotation for each model (and alignments):
>> O-FucT  GDP-fucose protein O-fucosyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.7   0.0   3.9e-14   1.2e-10      11     329 ..     128     489 ..     113     492 .. 0.75

  Alignments for each domain:
  == domain 1  score: 41.7 bits;  conditional E-value: 3.9e-14
      O-FucT  11 fNnqrdvilrmvavarllnaTLVlPpw.........dqlshwrdss..kqnrlpFsdfFdiesLkkdvrviemeeflk..........elppelwsaek 88 
                 f+ qr ++ ++va+a+++++TL +Pp            ++++++++    +++ +s+++di+ L++    ++ ++f +                     
  KOO23556.1 128 FGVQRRALATAVALAHITGRTLLIPPPewypdqaqqFANAFMNSPQgrVPQFVRWSELYDIDRLRQS--GVDADDFHDvnidridravL---------- 214
                 899**********************98889999987566889999898899*************885..57889999943333333320.......... PP

      O-FucT  89 r.....ksvckeakpsyylkeilpllkkkkvvqlakfqklrCrskqgnpfglwdnfevsfeaelvlhdefgeeWkarv..................... 161
                        +++ +          +p + ++    l ++q   C+   +  +gl  nf  +f++e+ +++ +ge + + +                     
  KOO23556.1 215 AtggamAKLPAS----------VPSTPNSDDALLGHLQAHPCK---HGRTGLQSNFAFEFDSETNAQAGVGELYGRHLridalrcgalplsrtetqkal 300
                 233333222222..........222222222334444666666...66666888887777788877777776555555667777888888888888888 PP

      O-FucT 162 .................................daLrFskeieelaaklvkrllekrkakggpylalHLRrekDflaaCehgggeeellaspresrree 227
                                                  + Lr s  +  +aa++++++l    +  +++ a+H+R + D++                    +  
  KOO23556.1 301 aawlgdvpiaavfdvghhahtivsdmkvfvkldQGLRPSALLDHEAARFIHEMLLA--RGASKFAAVHWRHG-DYVP-------------------SVY 377
                 88888889999999999999999999999999999******************974..4569**********.****...................333 PP

      O-FucT 228 gkltpeecvpsleeialqlkgllkelkltsvfvAtdeiyggeelkelkkefpnlvkvtkeklaskeelekfkdgsva..............aiDqiics 312
                 + ltp e   s+++ ++++++   e     v + t ++ ++  l+el++++p lv+ t   + + ++ + +   +v                i+q+i+ 
  KOO23556.1 378 NMLTPLE---SVVKRVRKALNEELECPDCPVLLMTNCRNESA-LAELRAALPTLVRYTPLAPPTADDYRSWAADDVDatprtvfsdegprlLIEQAIAM 472
                 3377777...66666666666666668889******999888.**********887777776666666666555554455666666677799******* PP

      O-FucT 313 rsdvFigtyeStfsafv 329
                 r+d+F+g+ +S ++ fv
  KOO23556.1 473 RADAFVGNPRSAVTEFV 489
                 **************998 PP

>> zf_CCCH_4  Zinc finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.7   2.3   1.3e-09   3.9e-06       1      19 []      36      54 ..      36      54 .. 0.99
   2 ?   -1.1   1.2      0.72   2.2e+03       1       9 [.      64      73 ..      64      82 .. 0.80

  Alignments for each domain:
  == domain 1  score: 26.7 bits;  conditional E-value: 1.3e-09
   zf_CCCH_4  1 CkfflqGtCkkGdkCrFaH 19
                Ck++l+G CkkGd C F+H
  KOO23556.1 36 CKHWLRGLCKKGDDCDFLH 54
                ******************* PP

  == domain 2  score: -1.1 bits;  conditional E-value: 0.72
   zf_CCCH_4  1 Ckfflq.GtC 9 
                C  f q G C
  KOO23556.1 64 CWDFTQfGEC 73
                8889998888 PP

>> zf-CCCH_4  CCCH-type zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.5   0.7     5e-08   0.00015       1      21 [.      34      54 ..      34      55 .. 0.96
   2 ?    0.4   0.1       0.2     6e+02       1       9 [.     244     252 ..     244     254 .. 0.86

  Alignments for each domain:
  == domain 1  score: 21.5 bits;  conditional E-value: 5e-08
   zf-CCCH_4  1 rlCpyfakGsCrfGdnCrFsH 21
                ++C+++++G C+ Gd C F+H
  KOO23556.1 34 VVCKHWLRGLCKKGDDCDFLH 54
                59******************* PP

  == domain 2  score: 0.4 bits;  conditional E-value: 0.2
   zf-CCCH_4   1 rlCpyfakG 9  
                 ++C++  +G
  KOO23556.1 244 HPCKHGRTG 252
                 79***9988 PP

>> zf-CCCH  Zinc finger C-x8-C-x5-C-x3-H type (and similar)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.0   0.6   1.6e-07   0.00048       4      25 ..      34      54 ..      32      55 .. 0.94
   2 !    7.0   0.5    0.0018       5.5       3      27 .]      61      84 ..      59      84 .. 0.91
   3 ?   -2.4   0.0       1.7   5.1e+03      10      18 ..     241     249 ..     240     249 .. 0.74

  Alignments for each domain:
  == domain 1  score: 20.0 bits;  conditional E-value: 1.6e-07
                HCBCHHHHHS--TTGGG-SSBS CS
     zf-CCCH  4 elCrffmrtGyCkyGdrCkFaH 25
                + C++++r G Ck Gd C F H
  KOO23556.1 34 VVCKHWLR-GLCKKGDDCDFLH 54
                68******.************9 PP

  == domain 2  score: 7.0 bits;  conditional E-value: 0.0018
                CHCBCHHHHHS--TTGGG-SSBSCS CS
     zf-CCCH  3 telCrffmrtGyCkyGdrCkFaHgq 27
                ++ C +f + G+C     C F H+q
  KOO23556.1 61 MPDCWDFTQFGECGN-KECLFKHVQ 84
                78999**********.*******86 PP

  == domain 3  score: -2.4 bits;  conditional E-value: 1.7
                 HHHS--TTG CS
     zf-CCCH  10 mrtGyCkyG 18 
                 ++ + Ck+G
  KOO23556.1 241 LQAHPCKHG 249
                 567789998 PP

>> Torus  Torus domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.3   0.6   5.6e-08   0.00017      68      95 ..      31      58 ..      24      71 .. 0.84
   2 ?   -0.8   0.1      0.85   2.5e+03      73      98 ..      64      89 ..      59      98 .. 0.71

  Alignments for each domain:
  == domain 1  score: 22.3 bits;  conditional E-value: 5.6e-08
                TT--B-HHHHHT--SSGGG-SSB-S--- CS
       Torus 68 kesyfClfFarGlCakGkkCeylHrlPt 95
                + +++C ++ rGlC+kG +C++lH+l +
  KOO23556.1 31 RYKVVCKHWLRGLCKKGDDCDFLHKLDH 58
                56799*******************9965 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 0.85
                -HHHHH.T--SSGGG-SSB-S---SS- CS
       Torus 73 ClfFar.GlCakGkkCeylHrlPteed 98
                C  F++ G C   k+C + H  P+e+ 
  KOO23556.1 64 CWDFTQfGECG-NKECLFKHVQPDEKG 89
                55555535554.489******999876 PP

>> zf-CCCH_3  Zinc-finger containing family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   3.3   3.2e-05     0.096       8      59 ..      36      87 ..      31      94 .. 0.78

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 3.2e-05
   zf-CCCH_3  8 cyffyystctkGdscpfrheeaalGsetvctlW...qegrclrevckfrhmeidk 59
                c  +    c+kGd c f h+   l  + +   W   q g+c ++ c f+h++ d+
  KOO23556.1 36 CKHWLRGLCKKGDDCDFLHK---LDHDRMPDCWdftQFGECGNKECLFKHVQPDE 87
                66677778***********8...55666666553337899**********98665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (511 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       436  (0.0243181); expected 358.6 (0.02)
Passed bias filter:                      380  (0.0211947); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.55u 0.21s 00:00:00.76 Elapsed: 00:00:00.39
# Mc/sec: 3920.02
//
Query:       KOO23557.1  [L=592]
Description: protein kinase involved in the response to oxidative and osmotic stress [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
      1e-47  162.8   0.0    2.8e-46  158.0   0.0    2.6  1  Pkinase         Protein kinase domain
    2.8e-22   79.3   0.0    1.2e-11   44.4   0.0    3.1  2  Pkinase_Tyr     Protein tyrosine kinase
     0.0001   21.2   0.0     0.0002   20.3   0.0    1.4  1  Pkinase_fungal  Fungal protein kinase
  ------ inclusion threshold ------
      0.044   13.7   0.1      0.044   13.7   0.1    2.4  2  APH             Phosphotransferase enzyme family
       0.12   12.0   0.0       0.39   10.3   0.0    1.8  3  FTA2            Kinetochore Sim4 complex subunit FTA2


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  158.0   0.0   7.8e-50   2.8e-46       4     264 .]      50     398 ..      47     398 .. 0.91

  Alignments for each domain:
  == domain 1  score: 158.0 bits;  conditional E-value: 7.8e-50
                 EEEEEEESSEEEEEEEETTTTEEEEEEEEECHCHCHHHH....................HHHHHHHHHHHHHSCTTB--EEEEEEE..SSEEEEEEE-- CS
     Pkinase   4 leklGeGsfGkVykaveketgkivAvKkikkekakkkke....................kkvlrEikilkklkhpnivrlyevfee..kdelylvleyv 80 
                 +  lG+G+fG Vy+a ++ +g+ vA+K ++k + ++k++                    ++vl+Ei+++k+++hpn ++l+ev+ +   d+++lv+e++
  KOO23557.1  50 KGLLGKGAFGAVYQASDELRGDVVAIKLMDKGRLREKTKrlgkpkqigkpqtqqctsvsEAVLKEIAVMKHVRHPNCIHLFEVIDDpmGDRIFLVMELL 148
                 678****************************999998888999***************99**************************888********** PP

                 TTEBHHHHHH...HHSS--HHHHHHHHHHHHHHHHHHHHTTEE-SS-SGGGEEEET........................................... CS
     Pkinase  81 eggeladlle...rkgslseeeakkiakqilegleylHskgiiHrDlKpeNiLide........................................... 133
                  gg++++  +   +++ l+e+ a+++++ +l gleylH++gi+HrD+KpeNi ++e                                           
  KOO23557.1 149 LGGQVMEPDNlppDQTYLDEAVARSVFRDLLDGLEYLHANGILHRDIKPENIVFSErpmwsrarekgglleltntlgtlfsstssalgaaidglseatt 247
                 ****9988888888899**************************************88************************************999988 PP

                 ....TTE........EEE-SGTTSEESSSSCS.....................BCTTTSCGGGS-HHHHTTSCB.SHHHHHHHHHHHHHHHHHSS-STT CS
     Pkinase 134 ....kge........lKitDFGlakelesssk.....................ltsfvgtseYlAPEvlkeney.skkvDvWslGvilyelltgkppfs 198
                     + +         K+ DFG+++   +                          + +gt+ Y APE+l ++++ ++++DvW+ Gv+l+ l++g++pf+
  KOO23557.1 248 saesS-VpdrplvplAKLLDFGVSQLCVNVVAseaseagknggqkakprhddsILKATGTPPYFAPEMLVGKPFhGRPADVWASGVTLAYLTSGEMPFW 345
                 77650.1555677889********9998877778899**************99999*************777776************************ PP

                 TSSHHHHHHHHHHTHHHHHHHCTSHH...HHHTTS-HHHHHHHHHHT-SSGCCSTTHHHHHTSGGG CS
     Pkinase 199 gekgkekvekeldqlekilkilgetkeklpeaseiseeakdllkkllkkdpkkRltaeellqhpyl 264
                 +++   +   + +q          ++ + + a ++s e++ +l ++l+k+p++R+t++el q+ ++
  KOO23557.1 346 SDNM-PD---IWRQ---------IKEDSPKLAPHLSAELIAILGRMLHKNPRQRPTVAELRQDAWV 398
                 3333.33...4444.........23457778899****************************9995 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.4   0.0   3.3e-15   1.2e-11       6     139 ..      52     205 ..      48     209 .. 0.78
   2 !   28.4   0.0   2.6e-10   9.1e-07     169     257 ..     307     394 ..     291     396 .. 0.89

  Alignments for each domain:
  == domain 1  score: 44.4 bits;  conditional E-value: 3.3e-15
                  EEEEESSEEEEEEEEET..............TTTSSEEEEEEEEE...STTSSHHHHHHHHHHHHHHHTS-BTTB--EEEEEE..SSSSEEEEEE--T CS
  Pkinase_Tyr   6 klGeGafGkVvegtlkg..............ekekkevkVavKtl...keeateeekeelleeakimkklkhpnivkllgvct..keepllivteyvk 84 
                   lG+GafG V++++ +                +ek++     K++   + ++  + +e++l+e+++mk+++hpn ++l  v+    ++++++v+e++ 
   KOO23557.1  52 LLGKGAFGAVYQASDELrgdvvaiklmdkgrLREKTKRLGKPKQIgkpQTQQCTSVSEAVLKEIAVMKHVRHPNCIHLFEVIDdpMGDRIFLVMELLL 149
                  69**********9877566888888777666222233222333332112222233489************************9877888********* PP

                  TEBHH..HHHHHTCTTTSBHHHHHHHHHHHHHHHHHHHHTTEEEST-SGGGEEEEET CS
  Pkinase_Tyr  85 gGdLl..kfLrkkekekltlkdllsfalqvAkGmeyLeskklvHrdlaarNvLlsen 139
                  gG++   + L  + ++ l+     s+  ++ +G+eyL+++ ++Hrd+   N++ se+
   KOO23557.1 150 GGQVMepDNLPPD-QTYLDEAVARSVFRDLLDGLEYLHANGILHRDIKPENIVFSER 205
                  **99723468777.89999999999***************************98875 PP

  == domain 2  score: 28.4 bits;  conditional E-value: 2.6e-10
                  GGGS-HHHHHHSEEE.HHHHHHHHHHHHHHHHTTSSGTTTTSHHHHHHHHHHTTEES-BBTTSBHHHHHHHHHHT-SSGGGS--HHHHHH CS
  Pkinase_Tyr 169 vkWmapEslkekkft.sksDvWsfGvllwEiftlgespypglkneevleklkegkrlekpekcpeelyelmkkcweedpeeRptfselve 257
                    + apE+l  k f    +DvW+ Gv+l  + + ge+p+++ +  ++ +++ke+    +p+  ++el  ++ + ++++p++Rpt +el++
   KOO23557.1 307 PPYFAPEMLVGKPFHgRPADVWASGVTLAYLTS-GEMPFWSDNMPDIWRQIKEDSPKLAPH-LSAELIAILGRMLHKNPRQRPTVAELRQ 394
                  5799******999872569*********99988.*****************9999888887.99**********************9976 PP

>> Pkinase_fungal  Fungal protein kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.3   0.0   5.5e-08    0.0002     310     391 ..     173     321 ..     166     327 .. 0.77

  Alignments for each domain:
  == domain 1  score: 20.3 bits;  conditional E-value: 5.5e-08
  Pkinase_fungal 310 ealrDaIkghrsLflkagiLHrDiSenNilitds..kkegerkglLiDLDlakelsddssesgare............................. 373
                     +++rD + g++ L+   giLHrDi  +Ni++ +    + +++kg L +L     +   s++s+ +                              
      KOO23557.1 173 SVFRDLLDGLEYLH-ANGILHRDIKPENIVFSERpmWSRAREKGGLLELTNTLGTLFSSTSSALGAaidglseattsaessvpdrplvplaklld 266
                     589***********.*****************885444588899998888776666534444222244666677778888888888888888888 PP

  Pkinase_fungal 374 ....................................rtGTleFmaievlkgee.H 391
                                                          tGT+++ a e+l g+  H
      KOO23557.1 267 fgvsqlcvnvvaseaseagknggqkakprhddsilkATGTPPYFAPEMLVGKPfH 321
                     8888888888888888888888888888888888888888888888888765455 PP

>> APH  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.1   1.2e-05     0.044     141     181 ..     159     203 ..     108     210 .. 0.79
   2 ?   -3.5   3.8       2.2   7.9e+03     101     101 ..     437     437 ..     349     497 .. 0.39

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 1.2e-05
                 TCCHHHHHHHHHHHHHHHH--S....SS-EEEE-SS-SGGGEEEC CS
         APH 141 lldlleeleeqvlaalaallpg....elptvllHgDlhpgNllvd 181
                 l++++  l+e+v++ + + l+       + ++lH+D++p N+++ 
  KOO23557.1 159 LPPDQTYLDEAVARSVFRDLLDgleyLHANGILHRDIKPENIVFS 203
                 33355556666555555555555666*****************98 PP

  == domain 2  score: -3.5 bits;  conditional E-value: 2.2
                 H CS
         APH 101 f 101
                 +
  KOO23557.1 437 A 437
                 2 PP

>> FTA2  Kinetochore Sim4 complex subunit FTA2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.0       1.8   6.5e+03      29      62 ..      52      87 ..      46     111 .. 0.63
   2 ?   10.3   0.0   0.00011      0.39     170     204 ..     167     201 ..     153     204 .. 0.89
   3 ?   -3.7   0.0       2.1   7.4e+03     166     187 ..     337     358 ..     327     359 .. 0.83

  Alignments for each domain:
  == domain 1  score: -3.5 bits;  conditional E-value: 1.8
        FTA2 29 yLgkglhsiVlkv..kirgkeYALKlFrfleaeele 62
                +Lgkg+ + V+++  + rg + A+Kl  + + +e  
  KOO23557.1 52 LLGKGAFGAVYQAsdELRGDVVAIKLMDKGRLREKT 87
                348888888888854577888888886665554443 PP

  == domain 2  score: 10.3 bits;  conditional E-value: 0.00011
        FTA2 170 qeelevsqlpkllrdlkklhklgIvvrDlkeenyi 204
                 +e +  s +++ll+ l+ lh+ gI++rD+k+en++
  KOO23557.1 167 DEAVARSVFRDLLDGLEYLHANGILHRDIKPENIV 201
                 67788899************************986 PP

  == domain 3  score: -3.7 bits;  conditional E-value: 2.1
        FTA2 166 llkeqeelevsqlpkllrdlkk 187
                 l +++ ++  +++p+++r++k+
  KOO23557.1 337 LTSGEMPFWSDNMPDIWRQIKE 358
                 56778899999*******9985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (592 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       437  (0.0243739); expected 358.6 (0.02)
Passed bias filter:                      354  (0.0197445); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.60u 0.28s 00:00:00.88 Elapsed: 00:00:00.46
# Mc/sec: 3904.35
//
Query:       KOO23558.1  [L=1716]
Description: hypothetical protein Ctob_011431 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.5e-43  146.8   0.0      5e-06   26.6   0.0   11.1 13  Pentapeptide_4   Pentapeptide repeats (9 copies)
    4.8e-07   29.8  35.9       0.38   10.6   0.0   16.8 19  Ribosomal_L13e   Ribosomal protein L13e
  ------ inclusion threshold ------
      0.015   15.8   1.9         61    4.2   0.0    7.0  7  Acetyltransf_11  Udp N-acetylglucosamine O-acyltransferase; D
      0.028   14.5   2.4         17    5.6   0.0    6.6  8  Rv2175c_C        Rv2175c C-terminal domain of unknown functio
        0.1   12.4   0.5        0.5   10.2   0.1    2.6  2  SinI             Anti-repressor SinI
        1.9    7.4   9.6         10    5.0   9.6    2.0  1  XK-related       XK-related protein


Domain annotation for each model (and alignments):
>> Pentapeptide_4  Pentapeptide repeats (9 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.6   0.0    0.0059        18      11      72 ..     734     806 ..     724     811 .. 0.79
   2 !   23.0   0.0   2.2e-08   6.7e-05       1      71 [.     814     884 ..     805     890 .. 0.78
   3 ?    3.8   0.0     0.021        64       8      73 ..     871     937 ..     865     951 .. 0.76
   4 ?    0.4   0.0      0.25   7.6e+02       5      66 ..     918     979 ..     914     991 .. 0.62
   5 !   11.4   0.0   9.3e-05      0.28       3      72 ..    1006    1077 ..    1004    1082 .. 0.77
   6 !   19.2   0.0   3.3e-07     0.001       4      73 ..    1088    1160 ..    1081    1164 .. 0.76
   7 !   13.9   0.0   1.5e-05     0.045      33      77 .]    1164    1225 ..    1140    1225 .. 0.70
   8 !   13.0   0.0     3e-05      0.09       4      67 ..    1181    1244 ..    1178    1256 .. 0.72
   9 !   13.3   0.0   2.4e-05     0.073       5      69 ..    1262    1326 ..    1258    1332 .. 0.92
  10 !   11.9   0.0   6.5e-05       0.2       4      73 ..    1376    1445 ..    1374    1450 .. 0.87
  11 ?    3.6   0.0     0.024        73      13      66 ..    1476    1539 ..    1468    1540 .. 0.73
  12 !   26.6   0.0   1.7e-09     5e-06       1      75 [.    1548    1623 ..    1548    1635 .. 0.91
  13 !    8.3   0.0   0.00087       2.6       4      48 ..    1591    1635 ..    1589    1662 .. 0.55

  Alignments for each domain:
  == domain 1  score: 5.6 bits;  conditional E-value: 0.0059
  Pentapeptide_4  11 cklsnvnFsearlrdcnFtecrl..........snvnFdecnlsdvdfaevdlkrasFsgcnlknvnfsd.kl 72 
                     +kl +  +++ +l+++nFt + +          ++v  +  +l+d+  +  ++++  F + +lk  + s+ +l
      KOO23558.1 734 SKLRDGGYKAKDLKASNFTPAEMkaggylakemKEVGYSPETLKDSGYTAREMREGGFVARDLKPLKYSAlEL 806
                     5666677777777788888777777777777779999*********************999999888776566 PP

  == domain 2  score: 23.0 bits;  conditional E-value: 2.2e-08
  Pentapeptide_4   1 aeftrcsfnncklsnvnFsearlrdcnFtecrlsnvnFdecnlsdvdfaevdlkrasFsgcnlknvnfsdk 71 
                     +++++++f   +l++ ++++++l+++  +++ +  v F+ ++l+ +d a++++++a +++++ k+v f +k
      KOO23558.1 814 SDLRDVHFTLLQLKDGEYTATDLHAAKYSAAEMRVVGFQAADLKRADYAGTEMRTAGYTAMEMKEVGFTAK 884
                     46777778888888888888888888888888888889999999999999999999999999999988764 PP

  == domain 3  score: 3.8 bits;  conditional E-value: 0.021
  Pentapeptide_4   8 fnncklsnvnFsearlrdcnFtecrlsnvnFdecnlsdvdfaevdlkrasFsgcnlknvnfsd.klk 73 
                     + +   ++v F++ r +++   ++++ +v ++  +l+d+  +  +l+ a   +++ k v fs   l+
      KOO23558.1 871 YTAMEMKEVGFTAKRVKAAGYDAAQALEVGWSIEVLKDAGYEAGELRAAKCPASDMKAVGFSLqDLR 937
                     5555667888888888888888888888888888888888888888888888888888888753455 PP

  == domain 4  score: 0.4 bits;  conditional E-value: 0.25
  Pentapeptide_4   5 rcsfnncklsnvnFsearlrdcnFtecrlsnvnFdecnlsdvdfaevdlkrasFsgcnlknv 66 
                      +++ +++ + v Fs  +lr++  + + l++v  +   l+ +  + ++l++a  s  +lk++
      KOO23558.1 918 AAKCPASDMKAVGFSLQDLRGAGYSTAELQAVGYTPEELRAAGTSLAELTSAGSSVADLKTA 979
                     45566666666666666666666666666666666666666666666666666555555555 PP

  == domain 5  score: 11.4 bits;  conditional E-value: 9.3e-05
  Pentapeptide_4    3 ftrcsfnncklsnvnFsearlrdcnFtecrlsnvn.FdecnlsdvdfaevdlkrasFsgcnlknvnfsd.kl 72  
                      ++ ++f  + l+ +nF + +l++  Ft+ +l+++   +   ls++  +  dlk+ ++ + +lk+  f + +l
      KOO23558.1 1006 LKKAGFTVVELHAANFQARELIAVGFTAKDLKDAGyESAKELSEAGCTVRDLKEGNYNARTLKKGGFTAeEL 1077
                      567788888899999999999999999999988884556678888888888888888888888888865465 PP

  == domain 6  score: 19.2 bits;  conditional E-value: 3.3e-07
  Pentapeptide_4    4 trcsfnncklsnvnFsearlrdcnFtecrlsnvnFdecnlsdvdfaevdlkra..sFsgcnlknvnfsdk.lk 73  
                      +  +f ++ l  +++++ +lr++ F++  l+++ F+   l d+ f+++dl +    +++++lk +++++k l+
      KOO23558.1 1088 REGGFSASELRATDLKAPQLRAAGFNAMALKATGFTGQELLDAGFNPADLYNKgkGLTAMELKRCRINAKvLR 1160
                      4456778888888888888888888888888888888888888888888888777888888888888876355 PP

  == domain 7  score: 13.9 bits;  conditional E-value: 1.5e-05
  Pentapeptide_4   33 l................snvnFdecnlsdvdfaevdlkrasFsgcnlknvnfsd.klkdidF 77  
                                       ++ +F+ + l+++ f+ vdl+++ ++  +l n++fs+ +lk + F
      KOO23558.1 1164 VtieemkavgftadelyKQSKFNANELRKAGFSAVDLATLGITIAQLWNAKFSAeELKAAGF 1225
                      14444444444445558999999999999999999999999999999999998768987765 PP

  == domain 8  score: 13.0 bits;  conditional E-value: 3e-05
  Pentapeptide_4    4 trcsfnncklsnvnFsearlrdcnFtecrlsnvnFdecnlsdvdfaevdlkrasFsgcnlknvn 67  
                      ++++fn+  l ++ Fs+++l    +t ++l n++F+   l+ + f+ v ++++  +  +lk++ 
      KOO23558.1 1181 KQSKFNANELRKAGFSAVDLATLGITIAQLWNAKFSAEELKAAGFSWVAMRSIGATDEQLKTAG 1244
                      5677777777778888888888888888888888888888888888888777776666666665 PP

  == domain 9  score: 13.3 bits;  conditional E-value: 2.4e-05
  Pentapeptide_4    5 rcsfnncklsnvnFsearlrdcnFtecrlsnvnFdecnlsdvdfaevdlkrasFsgcnlknvnfs 69  
                      +++f ++ l ++ Fs+ +l+d+ Ft + l ++  +  +l+ +  + ++lk a F+  +l+++ ++
      KOO23558.1 1262 QAGFPAAELRRIGFSAEKLKDAGFTLVELRQAGYNVKTLELAGYSINQLKVAGFTSRDLRECGLK 1326
                      789999*******************************************************9987 PP

  == domain 10  score: 11.9 bits;  conditional E-value: 6.5e-05
  Pentapeptide_4    4 trcsfnncklsnvnFsearlrdcnFtecrlsnvnFdecnlsdvdfaevdlkrasFsgcnlknvnfsdklk 73  
                      +r +fn  +l +++F+  +l+++  t + l +  F+ ++l+++   +v+l++a ++ ++l+++ f ++ +
      KOO23558.1 1376 IRTGFNIEQLRRAEFTIEELKEAGVTLAELREGGFRASQLRSTGHGPVELTKAGYELSELREAGFPAHVM 1445
                      566777788999999999999999999999***********************************65443 PP

  == domain 11  score: 3.6 bits;  conditional E-value: 0.024
  Pentapeptide_4   13 lsnvnFsearlrdcnFtecrl.......snvn...FdecnlsdvdfaevdlkrasFsgcnlknv 66  
                      l ++ Fs a+l+++n +++ l       ++++   F+  +l+++  + + l++  F+  +lk+v
      KOO23558.1 1476 LRDAGFSVAELKAANVSAIELlgilvpvKEMRtlgFNAEDLKKAGCTLTMLRDGGFKLKELKEV 1539
                      6678899999999999999997777666444444577777777777777777777777777765 PP

  == domain 12  score: 26.6 bits;  conditional E-value: 1.7e-09
  Pentapeptide_4    1 aeftrcsfnncklsnvnFsearlrdcnFtecrlsnvnFdecnlsdvdfaevdlkrasFsgcnlknvnfsd.klkdi 75  
                      +ef+ ++f + +l  v F  a l+ + Ft+  + +  F+   l+++  ++++lk+a Fs+++l+++ f + +lk+ 
      KOO23558.1 1548 SEFRAAGFTAKQLRSVGFGPAALEHAGFTGKEFRSSGFTAKELKNIGYSPAKLKDAGFSAVELEEAGFGAiELKEG 1623
                      5899999999999999999999999999999999999999999999999999999999999999999977688876 PP

  == domain 13  score: 8.3 bits;  conditional E-value: 0.00087
  Pentapeptide_4    4 trcsfnncklsnvnFsearlrdcnFtecrlsnvnFdecnlsdvdf 48  
                      ++ ++  +kl+++ Fs+++l+++ F ++ l++  F    l  v+f
      KOO23558.1 1591 KNIGYSPAKLKDAGFSAVELEEAGFGAIELKEGGFMPEELGLVSF 1635
                      444444455666666666666666666665555555555555555 PP

>> Ribosomal_L13e  Ribosomal protein L13e
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.0   0.0     0.026        79      66      90 ..     879     903 ..     864     909 .. 0.80
   2 ?    1.8   0.0     0.064   1.9e+02      67      81 ..     940     954 ..     921     982 .. 0.62
   3 ?   -0.1   0.0      0.24   7.3e+02      67      79 ..    1000    1012 ..     995    1020 .. 0.85
   4 ?    0.2   0.0       0.2     6e+02      51      80 ..    1014    1043 ..    1012    1056 .. 0.79
   5 ?    1.6   0.2     0.073   2.2e+02      57      82 ..    1061    1086 ..    1052    1099 .. 0.83
   6 ?   -1.8   0.0      0.82   2.5e+03      63      82 ..    1088    1106 ..    1085    1113 .. 0.77
   7 ?   -1.3   0.0      0.55   1.6e+03      65      80 ..    1119    1134 ..    1106    1137 .. 0.82
   8 !   10.6   0.0   0.00013      0.38      64      91 ..    1140    1167 ..    1135    1172 .. 0.92
   9 ?   -1.2   0.0      0.53   1.6e+03      68      90 ..    1185    1207 ..    1183    1209 .. 0.90
  10 ?    3.2   0.0     0.023        69      68      88 ..    1215    1235 ..    1213    1252 .. 0.87
  11 ?   -1.4   0.0      0.59   1.8e+03      67     102 ..    1244    1280 ..    1238    1283 .. 0.69
  12 ?    2.9   0.0     0.028        84      66      85 ..    1283    1302 ..    1266    1312 .. 0.82
  13 ?    1.8   0.0     0.064   1.9e+02      66      87 ..    1313    1334 ..    1304    1336 .. 0.89
  14 ?    2.1   0.1     0.053   1.6e+02      68      80 ..    1390    1402 ..    1380    1411 .. 0.86
  15 ?    0.9   0.0      0.12   3.5e+02      67      90 ..    1429    1452 ..    1426    1455 .. 0.90
  16 ?    3.0   0.0     0.028        82      66      81 ..    1479    1494 ..    1467    1517 .. 0.79
  17 ?    0.5   0.0      0.15   4.6e+02      68      87 ..    1545    1564 ..    1537    1566 .. 0.91
  18 ?    0.1   0.0      0.22   6.5e+02      66      81 ..    1583    1598 ..    1575    1609 .. 0.81
  19 ?   -0.5   0.0      0.32   9.6e+02      67      91 ..    1644    1668 ..    1641    1677 .. 0.70

  Alignments for each domain:
  == domain 1  score: 3.0 bits;  conditional E-value: 0.026
  Ribosomal_L13e  66 rGFtleElkaagiskklArtiGIav 90 
                      GFt + +kaag +++ A  +G ++
      KOO23558.1 879 VGFTAKRVKAAGYDAAQALEVGWSI 903
                     69***************99999765 PP

  == domain 2  score: 1.8 bits;  conditional E-value: 0.064
  Ribosomal_L13e  67 GFtleElkaagiskk 81 
                     G++ +El+a+g +++
      KOO23558.1 940 GYSTAELQAVGYTPE 954
                     444444444443333 PP

  == domain 3  score: -0.1 bits;  conditional E-value: 0.24
  Ribosomal_L13e   67 GFtleElkaagis 79  
                      G++leElk+ag++
      KOO23558.1 1000 GYALEELKKAGFT 1012
                      9999999999986 PP

  == domain 4  score: 0.2 bits;  conditional E-value: 0.2
  Ribosomal_L13e   51 VrcptvrYntkvraGrGFtleElkaagisk 80  
                      V+  +  ++ +     GFt ++lk ag + 
      KOO23558.1 1014 VELHAANFQARELIAVGFTAKDLKDAGYES 1043
                      5666666777777788**********9764 PP

  == domain 5  score: 1.6 bits;  conditional E-value: 0.073
  Ribosomal_L13e   57 rYntkvraGrGFtleElkaagiskkl 82  
                       Yn ++    GFt eEl a g+s + 
      KOO23558.1 1061 NYNARTLKKGGFTAEELLAGGFSVAQ 1086
                      5999988888********99998665 PP

  == domain 6  score: -1.8 bits;  conditional E-value: 0.82
  Ribosomal_L13e   63 raGrGFtleElkaagiskkl 82  
                      r+G GF+ +El+a  +++  
      KOO23558.1 1088 REG-GFSASELRATDLKAPQ 1106
                      555.9********9998765 PP

  == domain 7  score: -1.3 bits;  conditional E-value: 0.55
  Ribosomal_L13e   65 GrGFtleElkaagisk 80  
                        GFt +El  ag+++
      KOO23558.1 1119 ATGFTGQELLDAGFNP 1134
                      57***********986 PP

  == domain 8  score: 10.6 bits;  conditional E-value: 0.00013
  Ribosomal_L13e   64 aGrGFtleElkaagiskklArtiGIavD 91  
                       G+G t  Elk + i++k+ r+iG+++ 
      KOO23558.1 1140 KGKGLTAMELKRCRINAKVLRSIGVTIE 1167
                      7************************986 PP

  == domain 9  score: -1.2 bits;  conditional E-value: 0.53
  Ribosomal_L13e   68 FtleElkaagiskklArtiGIav 90  
                      F  +El++ag+s+    t+GI++
      KOO23558.1 1185 FNANELRKAGFSAVDLATLGITI 1207
                      8899********99999999986 PP

  == domain 10  score: 3.2 bits;  conditional E-value: 0.023
  Ribosomal_L13e   68 FtleElkaagiskklArtiGI 88  
                      F+ eElkaag+s  + r+iG 
      KOO23558.1 1215 FSAEELKAAGFSWVAMRSIGA 1235
                      9************99999995 PP

  == domain 11  score: -1.4 bits;  conditional E-value: 0.59
  Ribosomal_L13e   67 GFtleElkaagiskklArtiGI.avDhRrknkseesl 102 
                      G + eElk ag s+ +  + G  a   Rr   s+e+l
      KOO23558.1 1244 GASAEELKTAGASATMLAQAGFpAAELRRIGFSAEKL 1280
                      6688999999988887666665244556666666655 PP

  == domain 12  score: 2.9 bits;  conditional E-value: 0.028
  Ribosomal_L13e   66 rGFtleElkaagiskklArt 85  
                       GFtl El++ag + k+ + 
      KOO23558.1 1283 AGFTLVELRQAGYNVKTLEL 1302
                      59*********999887655 PP

  == domain 13  score: 1.8 bits;  conditional E-value: 0.064
  Ribosomal_L13e   66 rGFtleElkaagiskklArtiG 87  
                       GFt ++l+++g++ +lA t+G
      KOO23558.1 1313 AGFTSRDLRECGLKCSLAFTLG 1334
                      59****************9988 PP

  == domain 14  score: 2.1 bits;  conditional E-value: 0.053
  Ribosomal_L13e   68 FtleElkaagisk 80  
                      Ft+eElk+ag++ 
      KOO23558.1 1390 FTIEELKEAGVTL 1402
                      9*********975 PP

  == domain 15  score: 0.9 bits;  conditional E-value: 0.12
  Ribosomal_L13e   67 GFtleElkaagiskklArtiGIav 90  
                      G+ l+El++ag+++++ r  G  v
      KOO23558.1 1429 GYELSELREAGFPAHVMRDQGFRV 1452
                      999************999999876 PP

  == domain 16  score: 3.0 bits;  conditional E-value: 0.028
  Ribosomal_L13e   66 rGFtleElkaagiskk 81  
                       GF+++Elkaa++s+ 
      KOO23558.1 1479 AGFSVAELKAANVSAI 1494
                      6**********99865 PP

  == domain 17  score: 0.5 bits;  conditional E-value: 0.15
  Ribosomal_L13e   68 FtleElkaagiskklArtiG 87  
                      Ft +E +aag+++k  r++G
      KOO23558.1 1545 FTTSEFRAAGFTAKQLRSVG 1564
                      9*************999998 PP

  == domain 18  score: 0.1 bits;  conditional E-value: 0.22
  Ribosomal_L13e   66 rGFtleElkaagiskk 81  
                       GFt +Elk+ g s++
      KOO23558.1 1583 SGFTAKELKNIGYSPA 1598
                      59*******9998765 PP

  == domain 19  score: -0.5 bits;  conditional E-value: 0.32
  Ribosomal_L13e   67 GFtleElkaagiskklArtiGIavD 91  
                      GF ++Elk  g+++k  +  G+++ 
      KOO23558.1 1644 GFGVHELKIIGFRPKELKEGGVQLE 1668
                      7888888888888877777776654 PP

>> Acetyltransf_11  Udp N-acetylglucosamine O-acyltransferase; Domain 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.4   0.0      0.57   1.7e+03      14      50 ..     977    1013 ..     972    1039 .. 0.73
   2 ?   -2.4   0.0       2.3   6.9e+03      19      33 ..    1063    1077 ..    1060    1079 .. 0.87
   3 ?   -0.1   0.0      0.44   1.3e+03      13      33 ..    1107    1127 ..    1102    1131 .. 0.85
   4 ?    1.1   0.0      0.19   5.6e+02      17      30 ..    1184    1197 ..    1143    1224 .. 0.57
   5 ?   -1.2   0.0         1     3e+03      22      34 ..    1269    1281 ..    1245    1298 .. 0.79
   6 ?    4.2   0.0      0.02        61      16      35 ..    1378    1397 ..    1371    1415 .. 0.87
   7 ?   -2.6   0.0       2.6   7.8e+03      12      29 ..    1505    1522 ..    1500    1528 .. 0.81

  Alignments for each domain:
  == domain 1  score: -0.4 bits;  conditional E-value: 0.57
                       EEEEE-HHHHHHTT--HHHHHHHHHHHHHHHSSSS-H CS
  Acetyltransf_11   14 rlrglNlvgLkRrgfseeeikalkkayrllyrsglsl 50  
                       + +g+  +gLk +g+s  e+k+   a + l + g+++
       KOO23558.1  977 KTAGISAIGLKAEGMSLIEMKEAGYALEELKKAGFTV 1013
                       5678888888888888777777766666666666554 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 2.3
                       -HHHHHHTT--HHHH CS
  Acetyltransf_11   19 NlvgLkRrgfseeei 33  
                       N   Lk+ gf++ee+
       KOO23558.1 1063 NARTLKKGGFTAEEL 1077
                       8899********996 PP

  == domain 3  score: -0.1 bits;  conditional E-value: 0.44
                       TEEEEE-HHHHHHTT--HHHH CS
  Acetyltransf_11   13 arlrglNlvgLkRrgfseeei 33  
                        r++g N + Lk  gf+ +e+
       KOO23558.1 1107 LRAAGFNAMALKATGFTGQEL 1127
                       7899************98875 PP

  == domain 4  score: 1.1 bits;  conditional E-value: 0.19
                       EE-HHHHHHTT--H CS
  Acetyltransf_11   17 glNlvgLkRrgfse 30  
                         N   L+++gfs+
       KOO23558.1 1184 KFNANELRKAGFSA 1197
                       33444455555555 PP

  == domain 5  score: -1.2 bits;  conditional E-value: 1
                       HHHHTT--HHHHH CS
  Acetyltransf_11   22 gLkRrgfseeeik 34  
                        L+R gfs+e++k
       KOO23558.1 1269 ELRRIGFSAEKLK 1281
                       5888888888766 PP

  == domain 6  score: 4.2 bits;  conditional E-value: 0.02
                       EEE-HHHHHHTT--HHHHHH CS
  Acetyltransf_11   16 rglNlvgLkRrgfseeeika 35  
                        g N++ L+R+ f+ ee+k+
       KOO23558.1 1378 TGFNIEQLRRAEFTIEELKE 1397
                       599**********9888775 PP

  == domain 7  score: -2.6 bits;  conditional E-value: 2.6
                       TTEEEEE-HHHHHHTT-- CS
  Acetyltransf_11   12 parlrglNlvgLkRrgfs 29  
                       ++r  g N + Lk++g +
       KOO23558.1 1505 EMRTLGFNAEDLKKAGCT 1522
                       4788899******99987 PP

>> Rv2175c_C  Rv2175c C-terminal domain of unknown function
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   0.0       3.6   1.1e+04      32      44 ..      21      33 ..      19      34 .. 0.84
   2 ?   -2.4   0.0       1.8   5.2e+03      11      20 ..     736     745 ..     735     753 .. 0.85
   3 ?   -1.3   0.0      0.79   2.4e+03      10      21 ..     775     786 ..     774     788 .. 0.88
   4 ?   -4.0   0.1       5.7   1.7e+04       7      20 ..     822     835 ..     821     836 .. 0.83
   5 ?    1.0   0.0      0.15   4.6e+02       8      20 ..     903     915 ..     901     917 .. 0.86
   6 ?   -2.5   0.0       1.9   5.7e+03      11      20 ..    1476    1485 ..    1471    1486 .. 0.82
   7 ?    5.6   0.0    0.0056        17       6      20 ..    1521    1535 ..    1516    1538 .. 0.86
   8 ?   -2.9   0.0       2.6   7.8e+03      11      20 ..    1600    1609 ..    1599    1610 .. 0.87

  Alignments for each domain:
  == domain 1  score: -3.4 bits;  conditional E-value: 3.6
   Rv2175c_C 32 LpgrPidALregr 44
                +p++P+ A+++++
  KOO23558.1 21 MPATPVTAIEADK 33
                689*****99875 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 1.8
   Rv2175c_C  11 LrDgGfddee 20 
                 LrDgG++ ++
  KOO23558.1 736 LRDGGYKAKD 745
                 89****9876 PP

  == domain 3  score: -1.3 bits;  conditional E-value: 0.79
   Rv2175c_C  10 vLrDgGfddeei 21 
                  L+D+G++ +e+
  KOO23558.1 775 TLKDSGYTAREM 786
                 59******9997 PP

  == domain 4  score: -4.0 bits;  conditional E-value: 5.7
   Rv2175c_C   7 tltvLrDgGfddee 20 
                 tl  L+Dg ++ ++
  KOO23558.1 822 TLLQLKDGEYTATD 835
                 68889*****9875 PP

  == domain 5  score: 1.0 bits;  conditional E-value: 0.15
   Rv2175c_C   8 ltvLrDgGfddee 20 
                 + vL+D+G++  e
  KOO23558.1 903 IEVLKDAGYEAGE 915
                 78*******9766 PP

  == domain 6  score: -2.5 bits;  conditional E-value: 1.9
   Rv2175c_C   11 LrDgGfddee 20  
                  LrD+Gf+  e
  KOO23558.1 1476 LRDAGFSVAE 1485
                  9*****9876 PP

  == domain 7  score: 5.6 bits;  conditional E-value: 0.0056
   Rv2175c_C    6 GtltvLrDgGfddee 20  
                   tlt+LrDgGf+ +e
  KOO23558.1 1521 CTLTMLRDGGFKLKE 1535
                  59*********9888 PP

  == domain 8  score: -2.9 bits;  conditional E-value: 2.6
   Rv2175c_C   11 LrDgGfddee 20  
                  L+D+Gf+  e
  KOO23558.1 1600 LKDAGFSAVE 1609
                  89****9887 PP

>> SinI  Anti-repressor SinI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.1   0.00017       0.5       5      19 ..     480     494 ..     478     496 .. 0.94
   2 ?   -2.4   0.1       1.4   4.3e+03      13      21 ..    1160    1168 ..    1160    1170 .. 0.85

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.00017
                 HHHHHHHHHHHT--S CS
        SinI   5 WveLikEAkesGlsk 19 
                 W+eL++ A+e+Gl++
  KOO23558.1 480 WIELVHAAREAGLTV 494
                 *************95 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 1.4
                  HHHT--SHH CS
        SinI   13 kesGlskeE 21  
                  + +G+++eE
  KOO23558.1 1160 RSIGVTIEE 1168
                  579*****9 PP

>> XK-related  XK-related protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.0   9.6    0.0035        10       4     151 ..     310     442 ..     307     491 .. 0.62

  Alignments for each domain:
  == domain 1  score: 5.0 bits;  conditional E-value: 0.0035
  XK-related   4 llslllyiadvvtdvvlaveYysngdyvwfgltllfvllpslvvqlfsllwykedrskkkskeelkswllvlllhllqlgvlwrylealylgiksrkkk 102
                 +l+++ly+adv +dv ++   + +++ +w+++ ++++++  ++v l +  ++++ + + +         l +++  + +g+++  + ++   +      
  KOO23558.1 310 VLAICLYFADVLSDVKVIQLLLDTRNWAWAAMSIFLLVIQFVIVYLRVQPYLRSTFGSSS------PIYLGFVVLGFPFGLIFLDILMFLEPFGLL--- 399
                 799********************************9999888888433333333333332......223334444444444443333333222222... PP

  XK-related 103 eskeeeeereyyerkllkeeadlsmlrll.eaflesaPqlvLqlyillqt 151
                          ++++++ l    + + +r++ e ++es+Pq +Lq  i ++ 
  KOO23558.1 400 ----ATMPLPSWMKQFL---PAYKATRVIaEVVIESLPQSMLQAFIYVSV 442
                 ....2334566655555...444444444267788888888887776655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1716 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       672  (0.0374812); expected 358.6 (0.02)
Passed bias filter:                      523  (0.0291706); expected 358.6 (0.02)
Passed Vit filter:                        47  (0.00262145); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 1.04u 0.32s 00:00:01.36 Elapsed: 00:00:00.49
# Mc/sec: 10627.02
//
Query:       KOO23559.1  [L=534]
Description: ankyrin repeat-containing protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.1e-23   83.6   0.4    8.9e-12   45.4   0.1    2.1  2  Ank_2     Ankyrin repeats (3 copies)
    2.3e-15   56.7   2.6    3.5e-09   37.0   0.1    2.4  3  Ank_4     Ankyrin repeats (many copies)
    1.7e-09   37.7   0.6    0.00098   19.5   0.1    2.6  2  Ank       Ankyrin repeat
    4.7e-09   35.8   0.3     0.0062   16.9   0.0    3.0  2  Ank_3     Ankyrin repeat
    2.9e-06   27.4   0.7    0.00027   21.2   0.2    2.6  2  Ank_5     Ankyrin repeats (many copies)


Domain annotation for each model (and alignments):
>> Ank_2  Ankyrin repeats (3 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.7   0.0   4.3e-15   1.6e-11      24      81 ..      64     128 ..      48     130 .. 0.81
   2 !   45.4   0.1   2.5e-15   8.9e-12       1      77 [.      71     156 ..      71     161 .. 0.88

  Alignments for each domain:
  == domain 1  score: 44.7 bits;  conditional E-value: 4.3e-15
       Ank_2  24 k.ngktaLhyAakngnleivklLleh......adndgrtpLhyAarsghleivklLlekgadinl 81 
                 +  g taL++Aa++gn++++++Ll        ++++grt++++Aa  gh e+vklLl  +a i++
  KOO23559.1  64 NsIGITALMLAAMEGNVDAARILLRRgasvglVNCYGRTAIILAAMAGHVEMVKLLLSVDAPIDI 128
                 14789*******************9666788899***********************55666655 PP

  == domain 2  score: 45.4 bits;  conditional E-value: 2.5e-15
       Ank_2   1 LhlAakngnlelvklLl.egadpn..k.ngktaLhyAakngnleivklLleh......adndgrtpLhyAarsghleivklLlekga 77 
                 L+lAa++gn ++ ++Ll  ga ++  +  g+ta+++Aa++g++e+vklLl+        d  gr +L +A   gh + v +L+ k a
  KOO23559.1  71 LMLAAMEGNVDAARILLrRGASVGlvNcYGRTAIILAAMAGHVEMVKLLLSVdapidiSDAFGRDALAWAEARGH-KHVAILVRKHA 156
                 8*******9*********9999998747**********************955686666699********999*9.99999996544 PP

>> Ank_4  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.6   0.0   8.9e-05      0.32      24      55 .]      56      87 ..      54      87 .. 0.88
   2 !   37.0   0.1   9.8e-13   3.5e-09       3      55 .]      69     120 ..      67     120 .. 0.96
   3 !   22.9   0.1   2.7e-08   9.7e-05       1      52 [.     100     150 ..     100     151 .. 0.92

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 8.9e-05
       Ank_4 24 gadinaqdnrsGetalhiAakrgnveilklLl 55
                ++d+  ++n+ G tal  Aa+ gnv++++ Ll
  KOO23559.1 56 DKDLELVANSIGITALMLAAMEGNVDAARILL 87
                56777789999*****************9987 PP

  == domain 2  score: 37.0 bits;  conditional E-value: 9.8e-13
       Ank_4   3 taLhyaaisgrlelvrlLlekgadinaqdnrsGetalhiAakrgnveilklLl 55 
                 taL  aa++g+++++r+Ll +ga++  + n +G+ta++ Aa+ g+ve++klLl
  KOO23559.1  69 TALMLAAMEGNVDAARILLRRGASVGLV-NCYGRTAIILAAMAGHVEMVKLLL 120
                 78999**************99*******.99*********************8 PP

  == domain 3  score: 22.9 bits;  conditional E-value: 2.7e-08
       Ank_4   1 eltaLhyaaisgrlelvrlLlekgadinaqdnrsGetalhiAakrgnveilk 52 
                 ++ta+  aa++g++e+v+lLl+ +a i+ + ++ G+ al  A  rg++++++
  KOO23559.1 100 GRTAIILAAMAGHVEMVKLLLSVDAPIDIS-DAFGRDALAWAEARGHKHVAI 150
                 5899*****************889999998.***********9999999876 PP

>> Ank  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.5   0.1   2.7e-07   0.00098       2      31 ..      67      97 ..      66      98 .. 0.91
   2 !   16.1   0.0   3.1e-06     0.011       1      29 [.      99     128 ..      99     131 .. 0.82

  Alignments for each domain:
  == domain 1  score: 19.5 bits;  conditional E-value: 2.7e-07
                SBBHHHHHHHHTTHHHHHHHH.TTTSTTCBT CS
         Ank  2 GnTPLHlAatngkkriiklLL.hGAnlnald 31
                G T+L+lAa++g+++ ++ LL +GA++ +++
  KOO23559.1 67 GITALMLAAMEGNVDAARILLrRGASVGLVN 97
                99*******************889*997776 PP

  == domain 2  score: 16.1 bits;  conditional E-value: 3.1e-06
                 TSBBHHHHHHHHTTHHHHHHHHT.TTSTTC CS
         Ank   1 dGnTPLHlAatngkkriiklLLh.GAnlna 29 
                 +G+T+  lAa+ g+++++klLL+  A +++
  KOO23559.1  99 YGRTAIILAAMAGHVEMVKLLLSvDAPIDI 128
                 69********************32465665 PP

>> Ank_3  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.0   4.4e-06     0.016       2      29 ..      67      93 ..      67      95 .. 0.94
   2 !   16.9   0.0   1.7e-06    0.0062       1      30 [.      99     127 ..      99     128 .. 0.91

  Alignments for each domain:
  == domain 1  score: 15.7 bits;  conditional E-value: 4.4e-06
       Ank_3  2 GetpLhlAarsgnleivkfLlenkgadv 29
                G t+L+lAa+ gn++ ++ Ll+ +ga v
  KOO23559.1 67 GITALMLAAMEGNVDAARILLR-RGASV 93
                78********************.99987 PP

  == domain 2  score: 16.9 bits;  conditional E-value: 1.7e-06
       Ank_3   1 nGetpLhlAarsgnleivkfLlenkgadvn 30 
                 +G+t++ lAa++g++e+vk+Ll    a+++
  KOO23559.1  99 YGRTAIILAAMAGHVEMVKLLLS-VDAPID 127
                 79********************9.688776 PP

>> Ank_5  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.2   0.2   7.6e-08   0.00027      16      56 .]      67     107 ..      58     107 .. 0.93
   2 !   11.8   0.1   6.7e-05      0.24      15      43 ..      99     127 ..      96     137 .. 0.77

  Alignments for each domain:
  == domain 1  score: 21.2 bits;  conditional E-value: 7.6e-08
       Ank_5  16 gntpLhvAakygaadvvrlLlargadlnltdsrGltaldlA 56 
                 g t+L++Aa  g+ d +r+Ll rga+ +l + +G+ta+ lA
  KOO23559.1  67 GITALMLAAMEGNVDAARILLRRGASVGLVNCYGRTAIILA 107
                 669***********************************998 PP

  == domain 2  score: 11.8 bits;  conditional E-value: 6.7e-05
       Ank_5  15 ggntpLhvAakygaadvvrlLl..argadln 43 
                 +g t++++Aa +g+ ++v+lLl  + +  ++
  KOO23559.1  99 YGRTAIILAAMAGHVEMVKLLLsvDAP--ID 127
                 467*******************44444..33 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (534 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       917  (0.0511462); expected 358.6 (0.02)
Passed bias filter:                      394  (0.0219756); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.59u 0.30s 00:00:00.88 Elapsed: 00:00:00.45
# Mc/sec: 3604.74
//
Query:       KOO23560.1  [L=585]
Description: gmp synthase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    8.3e-38  130.1   0.0    1.4e-37  129.3   0.0    1.4  1  GATase           Glutamine amidotransferase class-I
    1.4e-16   60.9   0.0      3e-16   59.8   0.0    1.5  1  Peptidase_C26    Peptidase C26
    1.9e-10   40.6   0.0    2.1e-09   37.3   0.0    2.3  2  GMP_synt_C       GMP synthase C terminal domain
    1.8e-06   27.3   0.0    3.2e-06   26.5   0.0    1.3  1  NAD_synthase     NAD synthase
    0.00013   21.5   0.0    0.00047   19.7   0.0    1.8  2  QueC             Queuosine biosynthesis protein QueC
    0.00038   20.1   0.1      0.005   16.4   0.0    2.4  3  ThiI             Thiamine biosynthesis protein (ThiI)
    0.00049   19.0   0.1    0.00086   18.2   0.1    1.4  1  tRNA_Me_trans    tRNA methyl transferase
     0.0031   17.3   0.1      0.014   15.2   0.1    1.9  2  ATP_bind_3       PP-loop family
  ------ inclusion threshold ------
       0.01   15.9   0.0       0.12   12.4   0.0    2.0  2  PAPS_reduct      Phosphoadenosine phosphosulfate reductase fa
      0.012   15.3   0.1      0.023   14.4   0.1    1.3  1  Asn_synthase     Asparagine synthase
      0.021   14.1   0.0      0.031   13.6   0.0    1.2  1  Arginosuc_synth  Arginosuccinate synthase


Domain annotation for each model (and alignments):
>> GATase  Glutamine amidotransferase class-I
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  129.3   0.0   8.6e-41   1.4e-37       2     188 ..      59     235 ..      58     237 .. 0.96

  Alignments for each domain:
  == domain 1  score: 129.3 bits;  conditional E-value: 8.6e-41
                 EEESSTSTHHHHHHHHHHTT-EEEEEETTSHHHHHHHTHHSTSEEEEEEESSCTTTTTHHHHHHHHCTSTS-EEEETHHHHHHHHHTTTEEEEEECEEE CS
      GATase   2 liDnydsvtenlvhalvelgvkvevvpidasaeeilellknpdgilvsgGpgspgvegkieaikearenkiPiLGICLGmQllaiefgrkvvkekekeh 100
                 ++D+++++ + + ++++el ++++++p d++a++      ++ +i+vsgGp s+++  +++    +++ ++P+LGIC+G+Qll +++g++v+k+ ++e+
  KOO23560.1  59 ILDAGAQYGKVIDRQVRELSIECDLLPLDTPASKL----GEYAAIIVSGGPKSVNAADAPAYDPAIFKLGKPLLGICYGLQLLNYALGGTVEKKAKRED 153
                 89****************************99988....58***************************************************9999*** PP

                 EEEEEEEEETTTCGGTTTTSEEEEEEEEEEEEESGCHHHTTEEEEEEEETTEEEEEEEEETTTEEEESSBTTSTTSTTHHHHHHHHHH CS
      GATase 101 hggtmrlgddetallyglknevierhrHryevnpkelepaglevtakseddeelmeiiekknpfvgvQFHPEststpegpellfnfli 188
                  + t+ + + ++al++gl+ + ++   H++ v++   +p+g++v+a+s d   +++i   +++++gvQFHPE+ ++  g ++l+nfl+
  KOO23560.1 154 GQFTIDIAE-GCALFKGLGTSTQVLLTHGDSVDQ---VPEGFRVIARSGD--LIAGIECAERQLYGVQFHPEVDLSIDGIAMLRNFLY 235
                 ********9.9***********************...***********44..79999999999**********************985 PP

>> Peptidase_C26  Peptidase C26
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.8   0.0   1.8e-19     3e-16     101     216 .]     120     219 ..     114     219 .. 0.91

  Alignments for each domain:
  == domain 1  score: 59.8 bits;  conditional E-value: 1.8e-19
  Peptidase_C26 101 alergvPilgiCrGlqllnvalGGtlyqdieeqsgltdhreheqsaashavkvekgsllaellgseeievnslHhqaikelaeelrveAvaeDgvi 196
                    + + g+P+lgiC Glqlln alGGt+ +++++        e+     + ++++ +g +l + lg ++++v   H  +++++ e++rv+A++ D +i
     KOO23560.1 120 IFKLGKPLLGICYGLQLLNYALGGTVEKKAKR--------EDG----QFTIDIAEGCALFKGLG-TSTQVLLTHGDSVDQVPEGFRVIARSGD-LI 201
                    56789**********************99993........443....557**************.9************************987.89 PP

  Peptidase_C26 197 EaieseeakafvlgvQwHPE 216
                      ie  e++  ++gvQ+HPE
     KOO23560.1 202 AGIECAERQ--LYGVQFHPE 219
                    999999966..********9 PP

>> GMP_synt_C  GMP synthase C terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.5   0.0       0.4   6.5e+02      61      80 ..     438     457 ..     417     463 .. 0.85
   2 !   37.3   0.0   1.3e-12   2.1e-09      37      92 .]     526     584 ..     501     584 .. 0.91

  Alignments for each domain:
  == domain 1  score: 0.5 bits;  conditional E-value: 0.4
                 HHHHHHHHHHHSTT---EEE CS
  GMP_synt_C  61 Lekissrivnevkgvnrvvy 80 
                 L ++++ +  +v++vnrv++
  KOO23560.1 438 LLELAQLLPTKVHQVNRVCF 457
                 66677888899*******98 PP

  == domain 2  score: 37.3 bits;  conditional E-value: 1.3e-12
                 EEEEEEE---------....B----HHHHHHHHHHHHHHSTT---EEEE---TTTS-S-- CS
  GMP_synt_C  37 vvalRaveseDamtad....vaelpyevLekissrivnevkgvnrvvyditskPpatiEw 92 
                  + +Ra  ++D+mt +      ++p e+L+++ ++i+  ++gv+rv +dit kPpat Ew
  KOO23560.1 526 SIGIRAFITRDFMTGRpacpGKDVPLECLDEMVAQIC-AIEGVARVALDITPKPPATTEW 584
                 689***********995544568************99.59*******************9 PP

>> NAD_synthase  NAD synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.5   0.0     2e-09   3.2e-06      17      94 ..     263     340 ..     249     354 .. 0.82

  Alignments for each domain:
  == domain 1  score: 26.5 bits;  conditional E-value: 2e-09
                   TTSEEEEEE-SSHHHHHHHHHHHHHHTCGEEEEEE--SSSTTHHHHHHHHHHHHHHTSEEEE---HHHHHHHHHHHHH CS
  NAD_synthase  17 gakgvvlGlSGGvDSslvaalavkalgkenvlalllPssvsseedvedalalaenlgievktidikpivrafeqelke 94 
                   ++k+v+  +SGGvDSs+ aal  ka+g+e+ + l + + +  +++    ++    lg+ ++++d +++ +  +  +k 
    KOO23560.1 263 PSKKVLCLVSGGVDSSVCAALINKAVGPERLICLHIDHGFMRHDESATVVKALSALGVPIEVLDASSTFACATTDIKG 340
                   457788889***************************988888888888888888999999999988888777766655 PP

>> QueC  Queuosine biosynthesis protein QueC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.7   0.0   2.9e-07   0.00047       1      63 [.     266     329 ..     266     363 .. 0.86
   2 ?   -1.3   0.0      0.79   1.3e+03     152     179 ..     424     451 ..     397     481 .. 0.79

  Alignments for each domain:
  == domain 1  score: 19.7 bits;  conditional E-value: 2.9e-07
                 EEEEE--SSHHHHHHHHHHHHH-..SEEEEEEEESS-TTSHHHHHHHHHHHHT--.-EEEEE-GG CS
        QueC   1 kavvllSGGlDSttvlalakkeg..kevealtfdYgqrhkkeleaakkiakelgveehkildldl 63 
                 k+++l+SGG+DS++++al +k++  +++++l++d g  ++ e  ++ k  ++lgv   ++ld + 
  KOO23560.1 266 KVLCLVSGGVDSSVCAALINKAVgpERLICLHIDHGFMRHDESATVVKALSALGV-PIEVLDASS 329
                 5799**************999987799*********9988888888888899999.888888774 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 0.79
                 -EEE-TTTT--HHHHHHHHHHTTHHHHH CS
        QueC 152 ieieaPlidlsKaeivklgkelgvplee 179
                  ++  Pl d +K e ++l++ l  ++++
  KOO23560.1 424 GRVLEPLRDYHKDELLELAQLLPTKVHQ 451
                 578899*********9999988866665 PP

>> ThiI  Thiamine biosynthesis protein (ThiI)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.0       2.1   3.5e+03     171     185 ..      38      52 ..      30      57 .. 0.83
   2 !   16.4   0.0   3.1e-06     0.005       2      83 ..     263     350 ..     262     380 .. 0.62
   3 ?    0.3   0.0      0.27   4.4e+02     139     161 ..     425     447 ..     413     459 .. 0.85

  Alignments for each domain:
  == domain 1  score: -2.6 bits;  conditional E-value: 2.1
        ThiI 171 kCsvlakhPttkakl 185
                  C +lak+P+++a  
  KOO23560.1  38 ICDILAKRPRVNAPR 52 
                 7**********9975 PP

  == domain 2  score: 16.4 bits;  conditional E-value: 3.1e-06
        ThiI   2 tqgkvlaLlSgGiDSpVaaylllkR.G.crvvlvhlknepgtseeaiekveklael...laeyqtslevklvvvdfkev.lkeilekv 83 
                  + kvl+L+SgG+DS V a l+ k  G  r  ++h++   +  +e   +v+ l +l   +   ++s ++   + d k     e+++ v
  KOO23560.1 263 PSKKVLCLVSGGVDSSVCAALINKAvGpERLICLHIDHGFMRHDESATVVKALSALgvpIEVLDASSTFACATTDIKGArTGELQHTV 350
                 5789*************99988774342467888888888888888888887776522244455555666666666543145666665 PP

  == domain 3  score: 0.3 bits;  conditional E-value: 0.27
        ThiI 139 lilrPLigldKeeiiklAkeigt 161
                  +l+PL  + K+e+ +lA+ + t
  KOO23560.1 425 RVLEPLRDYHKDELLELAQLLPT 447
                 69****************98877 PP

>> tRNA_Me_trans  tRNA methyl transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.2   0.1   5.3e-07   0.00086       1      74 [.     265     331 ..     265     337 .. 0.71

  Alignments for each domain:
  == domain 1  score: 18.2 bits;  conditional E-value: 5.3e-07
  tRNA_Me_trans   1 kkvvvalSgGVDSsvaaallkeqgyevigvflklweeedeegkeccaeedlkdaervaeklgiplevvdfekey 74 
                    kkv++++SgGVDSsv aal++++    + + l++ +           +++ +++ ++ + lg+p+ev+d ++++
     KOO23560.1 265 KKVLCLVSGGVDSSVCAALINKAVGPERLICLHIDHG-------FMRHDESATVVKALSALGVPIEVLDASSTF 331
                    69******************99876666666655433.......223445556666666777777777766665 PP

>> ATP_bind_3  PP-loop family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.1   8.5e-06     0.014       2      67 ..     267     328 ..     266     348 .. 0.77
   2 ?   -0.9   0.0      0.73   1.2e+03     133     157 ..     418     443 ..     371     448 .. 0.76

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 8.5e-06
                 EEEE--SCHHHHHHHHHHHHHCTTTTTEEEEEEEE-SSSTCHHHHHHHHHHHHHHTT-EEEEEE-- CS
  ATP_bind_3   2 vlvAvSgGlDSmaLllllaklkkklgiklvaihvdhglreeskeeaelvkelckklnikleiekvd 67 
                 vl  vSgG+DS +   l++k       +l+++h+dhg+  +  +e+++v +  + l++++e+ +++
  KOO23560.1 267 VLCLVSGGVDSSVCAALINKA--VGPERLICLHIDHGFMRH--DESATVVKALSALGVPIEVLDAS 328
                 56679********99999888..45779*********9764..44455556667788988887765 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 0.73
                 EEE.TTCCEE-CCCT--HHHHHHHHH CS
  ATP_bind_3 133 sei.asirlvRPlLkvskeeleeylk 157
                 +++ +++r++ Pl ++ k+el e+++
  KOO23560.1 418 RQLrDEGRVLEPLRDYHKDELLELAQ 443
                 33325689999999999999998876 PP

>> PAPS_reduct  Phosphoadenosine phosphosulfate reductase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   7.6e-05      0.12       3      64 ..     268     331 ..     266     350 .. 0.78
   2 ?    1.1   0.0      0.22   3.6e+02      16     113 ..     368     467 ..     362     482 .. 0.73

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 7.6e-05
                  EEE--SSCTCHHHHHHHHHHCTTH..EEEEEE-STB-HHHHHHHHHHHHHTT-EEEEEE-SCHH CS
  PAPS_reduct   3 vvsvsgGkdslVllhLalkafkpv..pvvfvdtghefpetiefvdeleeryglrlkvyepeeev 64 
                    +vsgG ds+V   L+ ka  p     +++d g    +  ++v +  + +g+ ++v +   ++
   KOO23560.1 268 LCLVSGGVDSSVCAALINKAVGPErlICLHIDHGFMRHDESATVVKALSALGVPIEVLDASSTF 331
                  6799*******************63358999999877666677777777788888777766665 PP

  == domain 2  score: 1.1 bits;  conditional E-value: 0.22
                  HHHHHHHCTTHEEEEEE-STB-HHHHHHHHHHHHHTT-EEEEEE-SCHHHHHHHHHH-...S-THHHC.HHHHHHTHHHHHHHHHCTTECEEE----C CS
  PAPS_reduct  16 lhLalkafkpvpvvfvdtghefpetiefvdeleeryglrlkvyepeeevaekinaekh...gsslyee.aaeriaKveplkkaLekldedalltGaRr 109
                   +L+ k   ++  vf+ +g   p++ie    l++    ++k++ ++ +  +++  e+    + ++y++ ++ ++a++ p k   ++++++  l+Ga  
   KOO23560.1 368 QQLCEKKGLQAADVFLAQGTLRPDLIESASTLVSTNAECIKTHHNDTQLVRQLRDEGRvlePLRDYHKdELLELAQLLPTKV--HQVNRVCFLMGAPL 463
                  556666666667799999***************999999*********9999998885111333443356666666666555..66666666666666 PP

                  CCTT CS
  PAPS_reduct 110 desk 113
                  de++
   KOO23560.1 464 DEPP 467
                  6555 PP

>> Asn_synthase  Asparagine synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.4   0.1   1.4e-05     0.023      19      73 ..     266     321 ..     251     332 .. 0.79

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 1.4e-05
  Asn_synthase  19 pvGalLSGGlDSSliaalaarqsk.splktFsigfeekgsdeakyakevaehlgte 73 
                   +v +l SGG+DSS+ aal ++    ++l + +i+    ++de++   ++  +lg++
    KOO23560.1 266 KVLCLVSGGVDSSVCAALINKAVGpERLICLHIDHGFMRHDESATVVKALSALGVP 321
                   689***************99977646666666654337778887777777777765 PP

>> Arginosuc_synth  Arginosuccinate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.0   1.9e-05     0.031       5      64 ..     272     332 ..     267     353 .. 0.92

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 1.9e-05
  Arginosuc_synth   5 sGGlDtsviikllkeklg.eeviavavdvGqeeedldevkekalklgavksvvvDakeefv 64 
                      sGG+D sv+ +l+++ +g e  i + +d G  ++d  ++  kal++  v   v Da+  f+
       KOO23560.1 272 SGGVDSSVCAALINKAVGpERLICLHIDHGFMRHDESATVVKALSALGVPIEVLDASSTFA 332
                      9*****************899***********999999999***99999********9998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (585 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       346  (0.0192983); expected 358.6 (0.02)
Passed bias filter:                      336  (0.0187406); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.56u 0.27s 00:00:00.83 Elapsed: 00:00:00.43
# Mc/sec: 4069.17
//
Query:       KOO23561.1  [L=1757]
Description: myosin [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
   5.5e-193  642.9   0.0   7.5e-193  642.4   0.0    1.2  1  Myosin_head   Myosin head (motor domain)
    4.6e-14   52.7   0.0    2.3e-08   34.1   0.0    2.6  2  Tub           Tub family
    1.5e-12   47.8  13.0    9.9e-05   23.0   0.1    7.3  7  WD40          WD domain, G-beta repeat
    4.9e-05   23.3   0.0     0.0001   22.3   0.0    1.6  1  WW            WW domain
     0.0019   17.8   0.0     0.0037   16.9   0.0    1.4  1  DUF3527       Domain of unknown function (DUF3527)
     0.0064   16.8   0.0      0.024   14.9   0.0    2.0  1  AAA_22        AAA domain
  ------ inclusion threshold ------
      0.023   15.1   0.1      0.023   15.1   0.1    3.2  2  AAA_16        AAA ATPase domain
       0.18   11.4   0.1       0.74    9.3   0.1    2.0  2  Hpr_kinase_C  HPr Serine kinase C-terminal domain
       0.18   12.3   1.8         22    5.7   0.0    4.4  4  PQQ_3         PQQ-like domain
        0.2   10.2   1.7        1.4    7.4   0.0    2.4  2  Nup160        Nucleoporin Nup120/160


Domain annotation for each model (and alignments):
>> Myosin_head  Myosin head (motor domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  642.4   0.0  4.2e-196  7.5e-193       2     677 .]      39     715 ..      38     715 .. 0.95

  Alignments for each domain:
  == domain 1  score: 642.4 bits;  conditional E-value: 4.2e-196
                  SBGCGSSS-SHHHHHHHHHHHHHTT--EEEETTEEEEE--SS--STSSHHHHHHHTTS-GGGSSSSHHHHHHHHHHHHHHHTSEEEEEEESSTTSSHH CS
  Myosin_head   2 edlveLsllneasvlenlkkRykkdliYtysglvlvavnPykklkiysedvikaykgkkreelpPHifaiadeayrslledkenqsilisGEsGAGKt 99 
                  +dl++L +l++++v++ +k+R+++++iYt++  +l+a+nPy++l+iy+ed +++yk+     lpPH+f +a  ay  ll+  ++qsi+isGEsGAGK 
   KOO23561.1  39 DDLAALPQLTDEAVMNGVKTRFEQNKIYTNINSLLIAMNPYQRLQIYNEDAMARYKEAAIGSLPPHVFGVAAAAYTGLLSA-RSQSIVISGESGAGKS 135
                  89****************************************************************************976.68************** PP

                  HHHHHHHHHHHHHSSSSSCTCTTHHHHHHHHHHHHHHHHHEEEESSETTEESSEEEEEEEEETTSSEEEEEEEEECE-GGGGT---TT--SBHHHHHH CS
  Myosin_head 100 eatKkvlqylasvaeskekveeeeleekilqsnPilEafGnAktvrndnssRFGKfieiefdakgkiagakietYLLEksRvvkqakeERnyHiFYql 197
                  e++Kkvl++la+ a+++ +  ee +e++il+s P+lEafGnAkt  n+nssR+GKf+ ++fd++g+++ga+i+tYLLEk Rvv q + ER yHi Y++
   KOO23561.1 136 ETAKKVLKHLAYSAAKSVE-GEEGIEKRILASSPVLEAFGNAKTSMNNNSSRYGKFLMLQFDKQGQLSGANIKTYLLEKTRVVSQGPMERGYHIGYMI 232
                  *************999995.6799************************************************************************** PP

                  HHCSTHHHHHHTT--TCCGSTTTTTTSSSSBTTS-HHHHHHHHHHHHHHHT--HHHHHHHHHHHHHHHHHCTSSEEEECTTSSEEESSHHHHHHHHHH CS
  Myosin_head 198 lagaseeekkelkledvkdyaylsqsgeltvdgiddseefketkkaldilglseeeqkeifrivaailhlGniefkkeakdeqavledeeklekaael 295
                  +++  +e+ ++l++ ++kd +yl ++g+l  +g dd++ef + +++l   gl+ +  ++++rivaa l lG+++f  e++ e a+l++++ l + ++l
   KOO23561.1 233 CED--PEQSSALRMPKAKDLTYLGRTGCLLSPGWDDKQEFADSQRSLVKSGLDLDASNKLWRIVAACLLLGELDFGPEDAAE-ASLANKKPLVHLCDL 327
                  986..566789*****************************************************************999876.78888889******* PP

                  HTS-HHHHHHHHHSEEEEETTEEEEEE-BHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSS..........-S-SEEEEEEEEE-B---SSB-HH CS
  Myosin_head 296 lgvdaeelekalvkrriktgkevvskalnveqaevardalakaiyerlFdwlverinkslekkk..........eekksfiGvLDiaGFEifeknsFE 383
                  l vd+e ++kal+ +  k+g+e++s++ +  +a+  r  +a+ iy+++Fdwlv +in++l+ +            ++ +fiG+LDi+GFE+fe+ns E
   KOO23561.1 328 LDVDSEIMSKALTIKMTKAGSEWISSPNTPAKASELRHGFARSIYSTVFDWLVAQINRALRLDGavdvdlaeydGSTGQFIGILDIFGFETFEINSLE 425
                  ***********************************************************98765556666666568899******************* PP

                  HHHHHHHHHHHHHHHHHHHCHHHHHHHHHTTSSGCGS-G.GGCCHHHHHHHHSSSTSHHHHHHHHHTSTTS-HHHHHHHHHHHHTTSTTEEETTSTTT CS
  Myosin_head 384 qlcinyvnEkLqqlFnelvlklEqeeYvrEgiewkfidf.gldnqaiidLiekkplGilslLdeecllpkatdetfleklvkafskhakfeksrlkkg 480
                  qlcin++nE+Lq +Fne v+ + qee + Egi+  + d  ++dn  ++ Li  +p Gil  L+eec++pk++d ++l kl ++++ ++ ++ks   k 
   KOO23561.1 426 QLCINFCNERLQATFNEAVFNAVQEENAAEGIKLPEADLqDVDNAGVVKLIGGRPGGILHSLNEECIVPKGSDASLLGKLLETHKGNPLLKKSL--KV 521
                  *************************************983589***********************************************9985..68 PP

                  TTEEEEEETTCEEEEE-TTHHHHHH----HHHHHHHHTSSSHHHHHHCCSHCHB--.........CSSSECCCCCSBHHHHHHHHHHHHHHHHCTSEE CS
  Myosin_head 481 eakFiikHyAgkveYevegfleKnkDtlnedlvellksskkkllaelfkeeekeakaeakksekkkkkkkkkkkfktvgskfkeslaeLmktlestnp 578
                  +++F+++H+ g+v+Y ++g l KnkD+++edl+ ll++s++++++ +f  ++         + k+  +kkk ++f+ v++kf+++l+eL++ + + + 
   KOO23561.1 522 KESFVVTHFVGEVTYLATGLLLKNKDPVSEDLMVLLQRSRSSFVQGVFAPAS---------ETKSLLAKKKDTRFQGVAAKFQKQLEELLRLIGHSHM 610
                  99***********************************************944.........3556677778889************************ PP

                  EEEEEE-SSSS--TT---HHHHHHHHHHTTHHHHHHHHHHSSSEEEEHHHHHHHHGGGSTTSS-SS.......SSSHHHHHHHHHHHTTS-GCGEEEC CS
  Myosin_head 579 hfvRCikpnekkkakkldeslvleqlrclGvlegirirraGfpnRitfeefvqrYkllakkelkkl......lkedakkaveailkeleldkeeykiG 670
                  +f+RCikpn +k ++k+d++lv+ qlrc+Gv+e++r+   Gfp Ri   +++++Y+ l+++    +      l++++ +av++il++l + ++++ iG
   KOO23561.1 611 NFIRCIKPNREKVKEKWDAALVTMQLRCSGVFEAVRVIGMGFPDRIPLFSMITQYARLVPEDDRPEvdeegkLEGTESEAVSKILTALGIPESHFAIG 708
                  ***********************************************99******99999875443567788899999******************** PP

                  SSEEEET CS
  Myosin_head 671 ktKiFfr 677
                  ++K F++
   KOO23561.1 709 TSKCFLK 715
                  *****97 PP

>> Tub  Tub family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.1   0.0   1.3e-11   2.3e-08       8     166 ..    1206    1357 ..    1199    1362 .. 0.83
   2 !   15.9   0.0   4.7e-06    0.0084     202     238 ..    1376    1412 ..    1361    1415 .. 0.84

  Alignments for each domain:
  == domain 1  score: 34.1 bits;  conditional E-value: 1.3e-11
         Tub    8 liqcfikRdksg..kkltstYhLylelekgkfLlaarkrrrsttseYlisldaedlsrdsesyiGklrsnflgtkftlydkgvspkksaakesakvk 102 
                   i+c++ +d+ g   +  s Y +  + +++ f l a kr  ++++ Y +s++++d + d  +y Gkl  n  g +f++yd+    +++        +
  KOO23561.1 1206 FIECVMDKDELGlgINRLSLYMVLND-NNEAFALGALKRMINQNTAYELSMSENDDEVD-VHYTGKLSCNAKGNEFVMYDDL---NDAI-----GIR 1292
                  68999999999864444455555555.9*************************987555.89*******************9...2221.....245 PP

         Tub  103 kekvrkelaavvYelnvlgtrgprkmkvlipsie...kkvevspedeeeslqeetkkeeesdllvlk 166 
                  ++k+r+el+ v +    lg+     ++ +ip ++   ++++++p++  e + +++k+ ++++l+vlk
  KOO23561.1 1293 EGKARRELGLVLFGARQLGQCL--PIELVIPRVQrdgQAAQFRPKTLGEAMIQQYKTGKTKHLFVLK 1357
                  7888***************655..58899****888899999***9999999999999999999997 PP

  == domain 2  score: 15.9 bits;  conditional E-value: 4.7e-06
         Tub  202 deekvilqfGkvgkdvFtmDyryPlsalqAFaiclss 238 
                  +++ v+    +   d++++ yr+Plsa+qAF ++++ 
  KOO23561.1 1376 EHSAVVFEAYRSTGDRWAVRYRHPLSAFQAFNVAIAL 1412
                  56667777778889******************99975 PP

>> WD40  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.3   0.0       1.3   2.4e+03       6      17 ..     603     617 ..     598     624 .. 0.68
   2 ?   -0.1   0.1       1.1   2.1e+03      13      37 ..    1454    1477 ..    1444    1478 .. 0.73
   3 !    6.8   0.1    0.0074        13       5      38 .]    1488    1520 ..    1485    1520 .. 0.72
   4 !   23.0   0.1   5.5e-08   9.9e-05       3      38 .]    1526    1563 ..    1524    1563 .. 0.83
   5 ?    4.7   0.1     0.034        61       6      38 .]    1577    1608 ..    1572    1608 .. 0.83
   6 ?    3.2   0.2       0.1   1.8e+02       2      37 ..    1614    1655 ..    1613    1656 .. 0.74
   7 !   10.9   0.0   0.00038      0.69       5      37 ..    1711    1744 ..    1707    1744 .. 0.90

  Alignments for each domain:
  == domain 1  score: -0.3 bits;  conditional E-value: 1.3
                 EEESSSS...EEEEE CS
        WD40   6 tltGHss...vtsla 17 
                  l GHs+   +++++
  KOO23561.1 603 RLIGHSHmnfIRCIK 617
                 4668844555***95 PP

  == domain 2  score: -0.1 bits;  conditional E-value: 1.1
                  E.EEEEEETTSSEEEEEETTSEEEEE CS
        WD40   13 v.tslafspdgawlasGsdDgtvriW 37  
                  v ++l  + +g+ +++G+  g++  W
  KOO23561.1 1454 VaYCL--CVYGHRIFCGTHSGHIQQW 1477
                  55555..447888889988****999 PP

  == domain 3  score: 6.8 bits;  conditional E-value: 0.0074
                  EEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40    5 rtltGH.ssvtslafspdgawlasGsdDgtvriWd 38  
                   ++++H   v++l     g+ l+s+s+D  +r+Wd
  KOO23561.1 1488 IEWRAHsATVYAL--MVAGRSLISSSRDWLLRVWD 1520
                  5678894448888..444444677899*******9 PP

  == domain 4  score: 23.0 bits;  conditional E-value: 5.5e-08
                  EEEEEESS.SSEEEEEEETTSSEEE.EEETTSEEEEEE CS
        WD40    3 clrtltGH.ssvtslafspdgawla.sGsdDgtvriWd 38  
                  ++ tl GH + v++l+ s   + ++ sGs D+tvr+Wd
  KOO23561.1 1526 LVATLPGHtNAVRCLCGSVTAPDIVfSGSNDQTVRVWD 1563
                  6789****999****96666666544***********9 PP

  == domain 5  score: 4.7 bits;  conditional E-value: 0.034
                  EEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40    6 tltGH.ssvtslafspdgawlasGsdDgtvriWd 38  
                  +l  H ++v++l  s++g+ +  +s  + vriW+
  KOO23561.1 1577 VLGPHrGWVRALVCSSNGDQV--CSAAKEVRIWS 1608
                  66779889************7..4559******5 PP

  == domain 6  score: 3.2 bits;  conditional E-value: 0.1
                  EEEEEEE.SSSSEEEEE......EETTSSEEEEEETTSEEEEE CS
        WD40    2 qclrtlt.GHssvtsla......fspdgawlasGsdDgtvriW 37  
                  ++l++l+ GH  v++la       +   + l++G+  g+vr W
  KOO23561.1 1614 KLLHVLSvGH-TVYCLAicrvtfGHALRDTLFAGCNRGKVRSW 1655
                  67999988**.99999877755555555557788888888888 PP

  == domain 7  score: 10.9 bits;  conditional E-value: 0.00038
                  EEEESS.SSEEEEEEETTSSEEEEEETTSEEEEE CS
        WD40    5 rtltGH.ssvtslafspdgawlasGsdDgtvriW 37  
                  r l+GH  +v++++++p    ++++s D+ vr W
  KOO23561.1 1711 RGLEGHkAGVRAIDVDPLTMTVFTASNDRCVRQW 1744
                  5689**777************************* PP

>> WW  WW domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.3   0.0   5.6e-08    0.0001       2      31 .]    1014    1042 ..    1013    1042 .. 0.96

  Alignments for each domain:
  == domain 1  score: 22.3 bits;  conditional E-value: 5.6e-08
                  -TTEEEEE-TTTT-EEEEETTT--EESS-- CS
          WW    2 PpGWeeqwdpdsGrvYYyNheTgetqWekP 31  
                  P GWee  dp  G  Y++N++T +++  +P
  KOO23561.1 1014 PVGWEEMMDPF-GDLYFFNETTSQSTRQHP 1042
                  89*********.**************9999 PP

>> DUF3527  Domain of unknown function (DUF3527)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   0.0   2.1e-06    0.0037     303     350 ..    1368    1415 ..    1365    1416 .. 0.95

  Alignments for each domain:
  == domain 1  score: 16.9 bits;  conditional E-value: 2.1e-06
     DUF3527  303 leLfvqGskekePalslvnveeglYlvdfhakLSaLQaFSiavAilHs 350 
                  ++L ++G ++++ +++  + + + ++v ++  LSa QaF +a+A+lH+
  KOO23561.1 1368 VQLKFRGGEHSAVVFEAYRSTGDRWAVRYRHPLSAFQAFNVAIALLHN 1415
                  689999*****************************************6 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.0   1.3e-05     0.024       6      34 ..     122     149 ..     118     199 .. 0.75

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 1.3e-05
      AAA_22   6 gilvvtGesGtGKTtllrrlleqldeeak 34 
                 +++v+ GesG+GK+ +++++l+ l ++++
  KOO23561.1 122 QSIVISGESGAGKSETAKKVLKHL-AYSA 149
                 799******************998.3333 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.1   0.1   1.3e-05     0.023      16      58 ..     113     155 ..     109     187 .. 0.75
   2 ?  -10.9  15.7        10   1.8e+04      43     124 ..     756     817 ..     720     881 .. 0.45

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 1.3e-05
      AAA_16  16 lervrsgrpelvllsGesGvGKsslvrellralekdggiflrg 58 
                 +  + s r++++++sGesG GKs  ++++l++l  + +  ++g
  KOO23561.1 113 YTGLLSARSQSIVISGESGAGKSETAKKVLKHLAYSAAKSVEG 155
                 55566778899********************999884444444 PP

  == domain 2  score: -10.9 bits;  conditional E-value: 10
      AAA_16  43 ellralekdggiflrgkcdqlesaipysalaqalareellrqlldeaesaeleawrekleealaavpelagaeasrllellk 124
                 e++r+le++ + +l++  +  ++a++ +a ++a+++ +  +  ++e+++a++++                       + +l+
  KOO23561.1 756 EWRRQLEEEAAAALAAALKAEQEALEAAAALEAADKAKAAATAAAEKDAANAAE--------------------AEANKALA 817
                 333333333222222222222222222222222222222222222211111111....................22222222 PP

>> Hpr_kinase_C  HPr Serine kinase C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3   0.1   0.00041      0.74      19      40 ..     122     143 ..     109     153 .. 0.85
   2 ?   -2.5   0.0       1.8   3.2e+03      81     132 ..     408     461 ..     407     469 .. 0.72

  Alignments for each domain:
  == domain 1  score: 9.3 bits;  conditional E-value: 0.00041
                   EEEEEEESTCHHHHHHHHHHHT CS
  Hpr_kinase_C  19 vGvLitGesgvGKselaleLik 40 
                     ++i Gesg GKse+a +++k
    KOO23561.1 122 QSIVISGESGAGKSETAKKVLK 143
                   5699*************98877 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 1.8
                   EEHHHHH-GGGB-SEEEEEEEEEEESTT---TTTS..TTSS-EEEEETTEEEEE CS
  Hpr_kinase_C  81 idvkklfGaeavrekkeielvveLeewekkkeydr..lgleeetkeilgvkvpk 132
                   i + ++fG e+++ ++  +l++++ +   ++++++  ++  +e++   g+k+p+
    KOO23561.1 408 IGILDIFGFETFEINSLEQLCINFCNERLQATFNEavFNAVQEENAAEGIKLPE 461
                   456678******9999999****9999988888762233444555556666665 PP

>> PQQ_3  PQQ-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.0       2.9   5.2e+03       4      12 ..    1194    1202 ..    1194    1207 .. 0.82
   2 ?   -1.0   0.0       1.6   2.8e+03      17      33 ..    1458    1474 ..    1448    1486 .. 0.78
   3 ?    2.0   0.1      0.18   3.3e+02      18      40 .]    1544    1566 ..    1527    1566 .. 0.81
   4 ?    5.7   0.0     0.012        22      15      40 .]    1680    1705 ..    1641    1705 .. 0.83

  Alignments for each domain:
  == domain 1  score: -1.9 bits;  conditional E-value: 2.9
       PQQ_3    4 lWsvqlpgp 12  
                  +W+v+++g+
  KOO23561.1 1194 IWRVPTGGE 1202
                  7*****994 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 1.6
       PQQ_3   17 pavdgglvyvgtgdGtl 33  
                  + v+g ++++gt+ G++
  KOO23561.1 1458 LCVYGHRIFCGTHSGHI 1474
                  56788889999998886 PP

  == domain 3  score: 2.0 bits;  conditional E-value: 0.18
       PQQ_3   18 avdgglvyvgtgdGtlyAlDaet 40  
                  +++ ++v+ g+ d t++  D +t
  KOO23561.1 1544 VTAPDIVFSGSNDQTVRVWDIAT 1566
                  8999****************987 PP

  == domain 4  score: 5.7 bits;  conditional E-value: 0.012
       PQQ_3   15 sspavdgglvyvgtgdGtlyAlDaet 40  
                  +++av g ++ +g++ G+++A D  t
  KOO23561.1 1680 RALAVHGHVLLTGDSAGGVRAWDLST 1705
                  4569*******************876 PP

>> Nup160  Nucleoporin Nup120/160
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.2   0.6     0.064   1.1e+02     233     255 ..    1507    1529 ..    1491    1538 .. 0.81
   2 ?    7.4   0.0    0.0008       1.4     226     255 ..    1544    1572 ..    1532    1636 .. 0.82

  Alignments for each domain:
  == domain 1  score: 1.2 bits;  conditional E-value: 0.064
                  EEEEETT-EEEEEETTTTEEEEE CS
      Nup160  233 lfalsrdgkLrvWnlltgkclat 255 
                  l + srd  LrvW+l++++++at
  KOO23561.1 1507 LISSSRDWLLRVWDLQSLTLVAT 1529
                  556699*************9998 PP

  == domain 2  score: 7.4 bits;  conditional E-value: 0.0008
                  ...TTTEEEEEETT-EEEEEETTTTEEEEE CS
      Nup160  226 veigqtylfalsrdgkLrvWnlltgkclat 255 
                  v+ + +++f+ s d+++rvW+++t++  + 
  KOO23561.1 1544 VT-APDIVFSGSNDQTVRVWDIATLQGGEK 1572
                  54.7899*****************998765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1757 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1176  (0.0655921); expected 358.6 (0.02)
Passed bias filter:                      548  (0.030565); expected 358.6 (0.02)
Passed Vit filter:                        88  (0.00490825); expected 17.9 (0.001)
Passed Fwd filter:                        13  (0.000725082); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 1.20u 0.31s 00:00:01.51 Elapsed: 00:00:00.50
# Mc/sec: 10473.67
//
Query:       KOO23562.1  [L=91]
Description: hypothetical protein Ctob_005733 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
     0.0062   16.8   0.5      0.024   14.9   0.3    2.0  1  DUF4164   Domain of unknown function (DUF4164)
  ------ inclusion threshold ------
       0.03   14.4   0.1       0.03   14.4   0.1    1.3  1  DUF2096   Uncharacterized protein conserved in archaea (DUF20


Domain annotation for each model (and alignments):
>> DUF4164  Domain of unknown function (DUF4164)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.3   2.6e-06     0.024       9      79 ..      23      85 ..      16      87 .. 0.78

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 2.6e-06
     DUF4164  9 altrLeaaldsLEkavdrrleaerkrdeleaeiealgedrsRLaeeLdqaearaarleevnrEvsrrLkaa 79
                  ++L+ a+ +LE+av++ + ++r       +i+  ++ r+RL+ eL  ae+r a+l+ev   +  r+++a
  KOO23562.1 23 SCSELSSAISTLESAVTAFVGKDRG------DIKVFAQTRARLESEL--AEDRVAQLSEVDVVIVPRIDTA 85
                56799***************99997......5777777777887777..5777777777777777776665 PP

>> DUF2096  Uncharacterized protein conserved in archaea (DUF2096)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.4   0.1   3.4e-06      0.03     112     146 ..      51      85 ..       6      90 .. 0.82

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 3.4e-06
     DUF2096 112 gfetirvklkkpleeerlqeiaEyegvIiefeedd 146
                  f+ +r +l+ +l+e+r+ +++E   vI+   +  
  KOO23562.1  51 VFAQTRARLESELAEDRVAQLSEVDVVIVPRIDTA 85 
                 56789***********************9766555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (91 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       537  (0.0299515); expected 358.6 (0.02)
Passed bias filter:                      418  (0.0233142); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.40u 0.28s 00:00:00.68 Elapsed: 00:00:00.44
# Mc/sec: 623.84
//
Query:       KOO23563.1  [L=567]
Description: beta-ketoacyl-ACP-synthase, partial [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
     0.0029   17.2   0.0      0.014   15.0   0.0    2.1  1  ketoacyl-synt  Beta-ketoacyl synthase, N-terminal domain
  ------ inclusion threshold ------
        0.2   11.2   1.2        0.3   10.6   1.2    1.2  1  HXXSHH         Protein of unknown function (DUF1552)


Domain annotation for each model (and alignments):
>> ketoacyl-synt  Beta-ketoacyl synthase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.0   1.6e-06     0.014       3     109 ..     132     255 ..     131     299 .. 0.70

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 1.6e-06
                    -EEEEEEEEEBTTBSS.....HHHHHHHHHTT---EEES-TTSSCGTTSB....TSSTTEEE-BSS.EEE..S.......TTEGGT.TSTHHHHHH CS
  ketoacyl-synt   3 pvaivGmgarfPggnd.....veefwelLlegrdaiselpadrwdadkly....dpparaagkiktklggfld.......vddfdp.effgispre 81 
                    +++++G+++ +P++ +      e+  +lL++g + i++lp+d  +a+  +     ++a  + +++++l ++ d       + +fd  + +g sp  
     KOO23563.1 132 DIVVTGLSIGLPNALTgrpvfDEANLSLLMRGDNLIGPLPEDMLQAQLDRnvvqVHKAADGTRVRKPLNMVEDviklasrIGQFDLvSEYGLSPAI 227
                    69***********************************9998765444333233233444444444444443332001124567774367899**** PP

                    HCTS-HHHHHHHHHHHHHHHHHTS-HHT CS
  ketoacyl-synt  82 aeamdpqqrllleaawealedagltpee 109
                    +e +d    l++ a  eal++agl ++ 
     KOO23563.1 228 VETLDTTYALAVAAGLEALRNAGLIDAP 255
                    ***********************97643 PP

>> HXXSHH  Protein of unknown function (DUF1552)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   1.2   3.4e-05       0.3     171     229 ..     303     371 ..     289     406 .. 0.68

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 3.4e-05
      HXXSHH 171 vledakslkrkLgaadrqKLdeylesvreiekrlekaekwaptakaeagasappdaaa...........e 229
                  ++ a+++ r+  ++++q  de+l  +re+ +r +++e++a++a +e+  +  + a +           +
  KOO23563.1 303 SRAMANAVDRTRAQTRKQARDEWLRGLREMATRRAQEEQAADAAPSEKAVRMAALA-ElnkwlaeeealS 371
                 445566788889999*******************9999988887777743332222.2455555554440 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (567 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       656  (0.0365888); expected 358.6 (0.02)
Passed bias filter:                      454  (0.0253221); expected 358.6 (0.02)
Passed Vit filter:                        51  (0.00284455); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.59u 0.26s 00:00:00.85 Elapsed: 00:00:00.42
# Mc/sec: 4048.80
//
Query:       KOO23564.1  [L=192]
Description: hypothetical protein Ctob_005731, partial [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (192 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       597  (0.033298); expected 358.6 (0.02)
Passed bias filter:                      303  (0.0169); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.40u 0.26s 00:00:00.66 Elapsed: 00:00:00.41
# Mc/sec: 1392.07
//
Query:       KOO23565.1  [L=400]
Description: hypothetical protein Ctob_005730 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.1e-13   51.1   0.0    2.2e-07   30.6   0.0    2.2  2  Ras          Ras family
    3.8e-05   23.9   0.0    0.00025   21.3   0.0    2.0  2  Roc          Ras of Complex, Roc, domain of DAPkinase
      0.009   15.5   0.0       0.18   11.3   0.0    2.1  2  Arf          ADP-ribosylation factor family
  ------ inclusion threshold ------
      0.025   14.0   0.0        1.2    8.5   0.0    2.1  2  SRPRB        Signal recognition particle receptor beta subuni
      0.027   14.6   0.0      0.047   13.8   0.0    1.4  1  MMR_HSR1     50S ribosome-binding GTPase
      0.029   14.6   0.0          3    8.1   0.0    2.8  3  AAA_22       AAA domain
      0.044   13.3   0.0        9.7    5.7   0.0    2.4  2  GTP_EFTU     Elongation factor Tu GTP binding domain
       0.09   12.8   0.0       0.27   11.3   0.0    1.8  2  AAA_5        AAA domain (dynein-related subfamily)
       0.12   12.9   0.0       0.25   11.9   0.0    1.6  1  AAA_18       AAA domain
       0.16   11.8   0.0        1.6    8.6   0.0    2.3  2  RsgA_GTPase  RsgA GTPase


Domain annotation for each model (and alignments):
>> Ras  Ras family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.3   0.0   7.3e-07    0.0013       1      59 [.      41     101 ..      41     109 .. 0.87
   2 !   30.6   0.0   1.2e-10   2.2e-07      73     151 ..     206     304 ..     201     314 .. 0.86

  Alignments for each domain:
  == domain 1  score: 18.3 bits;  conditional E-value: 7.3e-07
                 EEEEEESTTSSHHHHHHHHHHSSCSSSCTTTSSEE..EEEEEEEETTEEEEEEEEEETTSG CS
         Ras   1 KlvlvGdsavGKtslllrfvkdkFkeeyesTigvd..fytkeievdgkevkleiwDTAGqe 59 
                 Kl l+G  + GK+s+ +r v ++F+   ++T      f ++  +v g+++ +e+ DT G +
  KOO23565.1  41 KLCLIGPCGAGKSSIAHRLVAHTFDPACKPTRAPSqlFWRHFEKVTGRDIMVELEDTPGVQ 101
                 899****************************965544667777899***********9966 PP

  == domain 2  score: 30.6 bits;  conditional E-value: 1.2e-10
                 SEEEEEEETTBHHHHHTHHHHHHHHHHHST........TTSEEEEEEETTTGGG............G-SS-HHHHHHHHHHHTSEEEEEBTTTTCTHHH CS
         Ras  73 egillvyditsresfenvkkwveeikrvae........envpivLvGnKvDlee............kravsteegeelakelglkfletSAktnenvee 151
                  g+l+v d+ sr+sf++++ +v+ i    +          v++++vGnK+Dl+             k+ +++ e ++ +  +++ ++e+SA+tn +++ 
  KOO23565.1 206 LGFLIVADLGSRSSFDTAHAIVDRIFARLQfdtndpmtCPVAVIIVGNKSDLRGrhremeeeealrKEILHRYENRHASPPHNVLYVECSAQTNSGLDA 304
                 589**********************99999999999887799***********999999999999666677777777778889***********99874 PP

>> Roc  Ras of Complex, Roc, domain of DAPkinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.3   0.0   1.4e-07   0.00025       1      65 [.      41      99 ..      41     107 .. 0.78
   2 ?    0.0   0.0      0.52   9.3e+02     110     119 ..     247     256 ..     208     257 .. 0.84

  Alignments for each domain:
  == domain 1  score: 21.3 bits;  conditional E-value: 1.4e-07
                EEEEESSTTSSHHHHHHCHCT-CCC-EEETTTTEEEEEEECGGSGGCTTBTTTTCEEEEEEEE-S CS
         Roc  1 KvvlvGdsgvGKtsllkrfvedkfsekekstigvdfltkevtkikgvendkkvkkvklniWDtaG 65
                K++l+G  g+GK+s+++r+v ++f++  k+t + + l ++   +++v+     +++ +++ Dt G
  KOO23565.1 41 KLCLIGPCGAGKSSIAHRLVAHTFDPACKPTRAPSQLFWRH--FEKVT----GRDIMVELEDTPG 99
                89****************************99988877763..34432....3456666666666 PP

  == domain 2  score: 0.0 bits;  conditional E-value: 0.52
                 -EEEEEE-TT CS
         Roc 110 pvilvgnkiD 119
                  vi+vgnk D
  KOO23565.1 247 AVIIVGNKSD 256
                 5799****99 PP

>> Arf  ADP-ribosylation factor family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.1   0.0     0.066   1.2e+02      15      46 ..      40      72 ..      34     100 .. 0.83
   2 !   11.3   0.0   9.9e-05      0.18     115     165 ..     245     303 ..     207     312 .. 0.77

  Alignments for each domain:
  == domain 1  score: 2.1 bits;  conditional E-value: 0.066
                EEEEEEESTTSSHHHHHHHHHHSSCEE.CSSSS CS
         Arf 15 lrilllGLDnaGKtTilkklkleelvt.tvPTi 46
                +++ l+G  +aGK+ i ++l  + ++   +PT 
  KOO23565.1 40 YKLCLIGPCGAGKSSIAHRLVAHTFDPaCKPTR 72
                578889999***********9998875467775 PP

  == domain 2  score: 11.3 bits;  conditional E-value: 9.9e-05
                 TSEEEEEEE-TTSTTSS-HHHHHHHTTGGGSS........SSSSEEEEEEBTTTTBTHH CS
         Arf 115 evallvlaNKqDlpealseeelrellgleelk........gkrkleiqkcsavkgeglk 165
                  va+++++NK Dl++   e e +e+l  e l+        + +++  ++csa +++gl+
  KOO23565.1 245 PVAVIIVGNKSDLRGRHREMEEEEALRKEILHryenrhasPPHNVLYVECSAQTNSGLD 303
                 6899***********99999999999888766666666656777788899999999986 PP

>> SRPRB  Signal recognition particle receptor beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.5   0.0   0.00069       1.2       6      59 ..      42     100 ..      38     108 .. 0.69
   2 ?    3.3   0.0     0.026        47     112     154 ..     245     287 ..     207     307 .. 0.87

  Alignments for each domain:
  == domain 1  score: 8.5 bits;  conditional E-value: 0.00069
                 EEEE-STTSSHHHHHHHHHHS....S---B--.-S.S-EEETTG...GGTT-SEEEETT- CS
       SRPRB   6 vllvGlsdsGKTslftrLttd....svkktvt.Sq.essaalkvksekgskltliDfPGh 59 
                 + l+G++ +GK s+ +rL       + k+t + Sq      +kv + ++ +++l D PG 
  KOO23565.1  42 LCLIGPCGAGKSSIAHRLVAHtfdpACKPTRApSQlFWRHFEKV-TGRDIMVELEDTPGV 100
                 579****************9944443344433233333333444.668888999999985 PP

  == domain 2  score: 3.3 bits;  conditional E-value: 0.026
                 ---EEEEEE-TTSTT---HHHHHHHHHHHHHHHHHCHHHHHH- CS
       SRPRB 112 avdiliACnKqelflakspklikdaLEkElnkiierrskalke 154
                  v ++i  nK++l   + +    +aL kE+ +  e+r +++ +
  KOO23565.1 245 PVAVIIVGNKSDLRGRHREMEEEEALRKEILHRYENRHASPPH 287
                 578999*********999999*********9999999998765 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.0   2.6e-05     0.047       2      64 ..      42     106 ..      41     157 .. 0.71

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 2.6e-05
                 EEEEESTTSSHHHHHHHHHTS....TEEESSSTTSSSSEEEEEEEETTEEEEEEECGGCSSHHHHHH CS
    MMR_HSR1   2 vaivGrpNvGKStLinaltge....kaivsdkpgtTrdinegrvklkgkeielvDtpGliegaseek 64 
                  +++G   +GKS++  +l+      +++ ++ p       +++v+ ++  +el DtpG ++ a++ +
  KOO23565.1  42 LCLIGPCGAGKSSIAHRLVAHtfdpACKPTRAPSQLFWRHFEKVTGRDIMVELEDTPG-VQ-AHTTE 106
                 689****************97332233444444444444444555556779*******.65.33332 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.1   0.0    0.0017         3       8      29 ..      42      63 ..      40     149 .. 0.74
   2 ?   -1.0   0.0       1.1     2e+03     107     135 ..     229     259 ..     217     261 .. 0.67
   3 ?    2.9   0.0     0.067   1.2e+02      24      64 ..     273     312 ..     262     321 .. 0.69

  Alignments for each domain:
  == domain 1  score: 8.1 bits;  conditional E-value: 0.0017
      AAA_22  8 lvvtGesGtGKTtllrrlleql 29
                l+++G+ G+GK+  + rl+   
  KOO23565.1 42 LCLIGPCGAGKSSIAHRLVAHT 63
                689************9998754 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 1.1
      AAA_22 107 ealeeLrsllnl.srkgvqliLvGtp.elrk 135
                 +++  L    n+  +++v++i+vG   +lr 
  KOO23565.1 229 RIFARLQFDTNDpMTCPVAVIIVGNKsDLRG 259
                 5555552223337899********9988876 PP

  == domain 3  score: 2.9 bits;  conditional E-value: 0.067
      AAA_22  24 rlleqldeeakaeeerpevvfvtlpsst.sskdllrellral 64 
                 ++l++++++  ++ ++  v++v+++++t s  d l  l+ra+
  KOO23565.1 273 EILHRYENR--HASPPHNVLYVECSAQTnSGLDALALLCRAI 312
                 444444322..334778888********76666677777765 PP

>> GTP_EFTU  Elongation factor Tu GTP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.2   0.0    0.0077        14       4      29 ..      40      65 ..      38     106 .. 0.81
   2 ?    5.7   0.0    0.0054       9.7     123     185 ..     246     306 ..     240     338 .. 0.72

  Alignments for each domain:
  == domain 1  score: 5.2 bits;  conditional E-value: 0.0077
                EEEEEEESTTSSHHHHHHHHHHHTTS CS
    GTP_EFTU  4 rnigiighvDhGKtTLtdrLlyktga 29
                 ++++ig + +GK+++  rL+++t +
  KOO23565.1 40 YKLCLIGPCGAGKSSIAHRLVAHTFD 65
                57899****************88755 PP

  == domain 2  score: 5.7 bits;  conditional E-value: 0.0054
                 TEEEEEEESCGST.HHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTEEEEEEBTTTTBTHHHHH CS
    GTP_EFTU 123 vpiivfiNKmDrl.kaelkeiveevkqklsrkeeklekygekgekevpvvfgSalkgegvktll 185
                 v +i++ NK D   +++  e  e++++++    ++ e+ +++  ++v  v +Sa ++ g+++l 
  KOO23565.1 246 VAVIIVGNKSDLRgRHREMEEEEALRKEI---LHRYENRHASPPHNVLYVECSAQTNSGLDALA 306
                 6699999****995344444444455555...3334444333337899**********999653 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   0.00015      0.27       2      23 ..      42      63 ..      41      77 .. 0.86
   2 ?   -2.2   0.0       2.1   3.8e+03     114     128 ..     246     262 ..     223     299 .. 0.61

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00015
                EEEE--SSSSHHHHHHHGGGGB CS
       AAA_5  2 vlLvGppGtgKselaerlaaal 23
                ++L+Gp G gKs++a rl a +
  KOO23565.1 42 LCLIGPCGAGKSSIAHRLVAHT 63
                8****************98876 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 2.1
                 -EEEEEESS--...-TT CS
       AAA_5 114 frviatanpld..rsln 128
                 + vi  +n+ d  +++ 
  KOO23565.1 246 VAVIIVGNKSDlrGRHR 262
                 55555555555542222 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   0.00014      0.25       2      24 ..      43      64 ..      42     125 .. 0.75

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 0.00014
      AAA_18  2 lltGtpGvGKttlakeLskrlgf 24
                +l G++G+GK+++a++L  ++ f
  KOO23565.1 43 CLIGPCGAGKSSIAHRLVAHT-F 64
                799**************9885.4 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.6   0.0   0.00091       1.6     103     122 ..      43      62 ..      40     112 .. 0.82
   2 ?    0.1   0.0      0.37   6.6e+02      47      64 ..     246     270 ..     240     315 .. 0.57

  Alignments for each domain:
  == domain 1  score: 8.6 bits;  conditional E-value: 0.00091
                  EEECSTTSSHHHHHHHHCTT CS
  RsgA_GTPase 103 vlvGqSGvGKStLinallpe 122
                  +l+G+ G+GKS++  +l+ +
   KOO23565.1  43 CLIGPCGAGKSSIAHRLVAH 62 
                  79************999876 PP

  == domain 2  score: 0.1 bits;  conditional E-value: 0.37
                  -EEEEEEE-GGG--HHH.......H CS
  RsgA_GTPase  47 iepvivlnKiDlleeee.......e 64 
                  + ++iv nK Dl  +++        
   KOO23565.1 246 VAVIIVGNKSDLRGRHRemeeeeaL 270
                  6788889999998776633333331 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (400 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       497  (0.0277205); expected 358.6 (0.02)
Passed bias filter:                      452  (0.0252106); expected 358.6 (0.02)
Passed Vit filter:                        65  (0.00362541); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.50u 0.27s 00:00:00.77 Elapsed: 00:00:00.42
# Mc/sec: 2856.56
//
Query:       KOO23566.1  [L=187]
Description: hypothetical protein Ctob_005728 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (187 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1135  (0.0633053); expected 358.6 (0.02)
Passed bias filter:                      663  (0.0369792); expected 358.6 (0.02)
Passed Vit filter:                        54  (0.00301188); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.42u 0.25s 00:00:00.67 Elapsed: 00:00:00.40
# Mc/sec: 1396.24
//
Query:       KOO23567.1  [L=460]
Description: coiled-coil domain-containing protein 96 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.2e-44  152.2  26.9    1.2e-44  152.2  26.9    2.5  2  DUF4201   Domain of unknown function (DUF4201)
  ------ inclusion threshold ------
       0.24   11.7  10.2       0.28   11.5   1.2    3.0  2  DUF2935   Domain of unknown function (DUF2935)


Domain annotation for each model (and alignments):
>> DUF4201  Domain of unknown function (DUF4201)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.3  10.8    0.0033        30      67     127 ..     161     221 ..     150     238 .. 0.87
   2 !  152.2  26.9   1.3e-48   1.2e-44       2     174 ..     273     445 ..     272     448 .. 0.98

  Alignments for each domain:
  == domain 1  score: 4.3 bits;  conditional E-value: 0.0033
     DUF4201  67 rlkkkttktvhalthlkeklhmleselselkkelkekeerlaklrkelykvklerdklrkq 127
                  l+kk + ++ + +  ++  + +e+ + ++++++ +  ++ ++lr+el ++++++dk   +
  KOO23567.1 161 VLQKKLAEHLRTSAKKMDESKDIEKSVTDQEQRYYKFLAQVNELRDELKRLQQQHDKTAME 221
                 5888899999999999999999**********************************97655 PP

  == domain 2  score: 152.2 bits;  conditional E-value: 1.3e-48
     DUF4201   2 rkkrnelsklrlklislkhqlakiqeklekkeelgegLtlidFeqlqienqalnkkIeernkeLkrlkkkttktvhalthlkeklhmleselselkkel 100
                 ++k++e++ +rl +i++++ l+k+++ l++ke+l++gL+lidFeql+ienq+ln+kIeern+eL++l+kktt+tv++lthlkekl+++++e++ +k+el
  KOO23567.1 273 SEKDEEVERVRLSNINRRNFLRKLENTLRQKEKLADGLHLIDFEQLKIENQTLNEKIEERNEELLKLRKKTTTTVQVLTHLKEKLQFVQAENQVRKQEL 371
                 689************************************************************************************************ PP

     DUF4201 101 kekeerlaklrkelykvklerdklrkqneklkqqggllrvPaLlkDYdktkekveekrksvkkLrrkvkilemr 174
                 ++ e +l++ r+ l++vk+erd lr++n+  +q +gl++ ++Ll DY+ +   v +k+++ +kL+++++++ ++
  KOO23567.1 372 SDFEVELTAKRDVLTQVKHERDALRAENAGRRQAKGLVSSEELLIDYETRRRAVINKKEAMAKLQHQYESIVSQ 445
                 ********************************************************************998765 PP

>> DUF2935  Domain of unknown function (DUF2935)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   1.2   3.1e-05      0.28      15     107 ..     150     265 ..     136     270 .. 0.72
   2 ?    3.7   2.2    0.0085        76      38      93 ..     291     347 ..     285     380 .. 0.71

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 3.1e-05
     DUF2935  15 keHalfi..ealldpke.kdlikeakef.............kkeFekllaeavelseglv.......rasseleeavakLneealkltreliqFkkell 90 
                 +e a+f+  ++ l++k  ++l   ak++             ++++ k+la+++el + l        +++ e+++++ +   +a +   ++++Fk+e+l
  KOO23567.1 150 EEKATFLdlNQVLQKKLaEHLRTSAKKMdeskdieksvtdqEQRYYKFLAQVNELRDELKrlqqqhdKTAMEMKRRLDDKQGKAEEIKAAFVEFKREIL 248
                 55555555544444444344444444444444444444444888888888888888887788888888899999999999999**************** PP

     DUF2935  91 ekvlscklfsiiyplli 107
                 ++ ++ +    i p li
  KOO23567.1 249 KGAENSRTSKPIPPKLI 265
                 ******99999999887 PP

  == domain 2  score: 3.7 bits;  conditional E-value: 0.0085
     DUF2935  38 efkkeFekllaeavelseglv........rasseleeavakLneealkltreliqFkkellekv 93 
                 +f +++e++l++ ++l++gl         +       + ++Lne++ +  +el ++ k++++ v
  KOO23567.1 291 NFLRKLENTLRQKEKLADGLHlidfeqlkI-------ENQTLNEKIEERNEELLKLRKKTTTTV 347
                 7889999***********998655554443.......555555555555555555555554443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (460 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2628  (0.146578); expected 358.6 (0.02)
Passed bias filter:                      452  (0.0252106); expected 358.6 (0.02)
Passed Vit filter:                        79  (0.00440627); expected 17.9 (0.001)
Passed Fwd filter:                        36  (0.00200792); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.97u 0.34s 00:00:01.31 Elapsed: 00:00:00.55
# Mc/sec: 2515.56
//
Query:       KOO23568.1  [L=240]
Description: flagellar basal body protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.1e-69  234.5   0.0    1.3e-69  234.3   0.0    1.0  1  DUF4498   Domain of unknown function (DUF4498)


Domain annotation for each model (and alignments):
>> DUF4498  Domain of unknown function (DUF4498)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  234.3   0.0     7e-74   1.3e-69      13     245 ..       2     233 ..       1     234 [. 0.96

  Alignments for each domain:
  == domain 1  score: 234.3 bits;  conditional E-value: 7e-74
     DUF4498  13 edkevkelLlkWslkgrikvqafsfdkkfqpynkeeflldffkdpeVasalklleksgawlalgsevs.kveveevpctvvsmsfFdkllsegivresg 110
                 +++++k++L+kW+l+ ++++++f+fdk+f+p+  +eflldff+++ V++   +   s++w +lg+ +   v+ +++p+tv++++fFd++ ++gi+r +g
  KOO23568.1   2 QSQSAKDYLRKWNLEPSCQLKSFRFDKPFSPDAVNEFLLDFFNSSAVQEMAPVCVGSNQWSTLGTVKPgAVKHTRIPTTVLRLDFFDRFRDAGIIRGDG 100
                 67899********************************************99************986667***************************987 PP

     DUF4498 111 s.ivkcldevvedftisdeLrkvlldedseeyelfseedreeflfrlfkhlvlGGelcQyedelqpYlettkslYkdlvsvqkdpetkkisvtstvykv 208
                   + kclde+v ++++sd+Lrk++lde see elf e +r+e++fr++k++ +GG ++Qyed+++pYl++tk lYkdlvsv+k ++ + +++ s  +++
  KOO23568.1 101 GdVAKCLDEQVGEILVSDKLRKMFLDESSEEWELFDELERSELIFRIMKAFAVGGGMNQYEDQIEPYLNLTKALYKDLVSVHK-TAAGTLQIGSLTFEI 198
                 55*********************************************************************************.66778********** PP

     DUF4498 209 kaldekgealypsekeeeqnfaylivdplkrhvtvly 245
                 +a+  ++++l+p+   +  nf+y++vdp  rh +++y
  KOO23568.1 199 SAVAGSSASLFPRP--STNNFCYVTVDPAARHAKIFY 233
                 ************76..599****************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (240 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       340  (0.0189637); expected 358.6 (0.02)
Passed bias filter:                      334  (0.018629); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.24s 00:00:00.68 Elapsed: 00:00:00.41
# Mc/sec: 1778.09
//
Query:       KOO23569.1  [L=468]
Description: hypothetical protein Ctob_009805 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.9e-23   82.7   0.6    5.4e-12   45.7   0.1    2.1  2  Bestrophin  Bestrophin, RFP-TM, chloride channel
  ------ inclusion threshold ------
        7.2    6.5   8.9        1.1    9.1   0.7    2.8  3  DctQ        Tripartite ATP-independent periplasmic transporte


Domain annotation for each model (and alignments):
>> Bestrophin  Bestrophin, RFP-TM, chloride channel
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.4   0.1     8e-13   7.2e-09       3     113 ..      22     145 ..      20     174 .. 0.80
   2 !   45.7   0.1     6e-16   5.4e-12     189     279 ..     329     427 ..     295     439 .. 0.88

  Alignments for each domain:
  == domain 1  score: 35.4 bits;  conditional E-value: 8e-13
  Bestrophin   3 arsklrsflkllfrwkGsvyklilrelllflllyalvvllyr...lee.rl.............fellsicelipLsfvLgFrvnavydRWweqrkllg 84 
                 ++s++r  + ll ++ Gs  ++il+ +++ ++++++v +++    l + r+             fel++     +L+++L+Fr+  +y+R++ +     
  KOO23569.1  22 HKSETRYGRLLLGVIYGSTTRRILPVVAALVIFSFIVDIYNVqasLADpRVpfvfpelqlpitpFELTAP----VLGLLLVFRTDSAYERFNLGSDVAW 116
                 56667888999**************************999995544334558999999999999999999....************************* PP

  Bestrophin  85 wldkaarslarqvrglsdeegrlarrtil 113
                 ++ + +rs  r +++++++ + +a   ++
  KOO23569.1 117 EITSSCRSALRRMSSWTSQADAEAALDLM 145
                 **************998533333333333 PP

  == domain 2  score: 45.7 bits;  conditional E-value: 6e-16
  Bestrophin 189 dqalkeleeelnelraklgsleridwtpiPlvYtqvvtravylyfllallgrqfldseidlylPvftllq.........................faff 262
                 +    ++++el+ ++  l+++e++  tpiPl Yt+   r++++++ l               lP f+l+                          + f+
  KOO23569.1 329 QE-RIAVDDELDRITCSLAKCEKLLRTPIPLGYTRYSVRFLWVWLSL---------------LP-FALVRtfndfgantwwedkpqpvltvamlfIGFV 410
                 22.24899***************************************...............**.*****************************9889* PP

  Bestrophin 263 ffGllkvaeqlenPFGe 279
                 f+ ++ +a q+e+PF+ 
  KOO23569.1 411 FLSIEDIAVQIEEPFAI 427
                 ***************87 PP

>> DctQ  Tripartite ATP-independent periplasmic transporters, DctQ component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.1   0.7   0.00013       1.1      59     121 ..      39     100 ..      31     105 .. 0.83
   2 ?   -0.1   2.0     0.092   8.3e+02      15      41 ..     352     380 ..     349     414 .. 0.69
   3 ?   -0.2   0.1     0.099   8.9e+02      21      42 ..     392     413 ..     378     437 .. 0.62

  Alignments for each domain:
  == domain 1  score: 9.1 bits;  conditional E-value: 0.00013
        DctQ  59 prvrrlleliadllallfaavliwagwlevaaalfeettpvlglplwwvylvlpigaallalv 121
                  + rr+l ++a+l+++ f++  i+   +  a  + + + p l+lp  ++ l +p+ ++ll+++
  KOO23569.1  39 STTRRILPVVAALVIFSFIV-DIYNVQASLADPRVPFVFPELQLPITPFELTAPVLGLLLVFR 100
                 67889999888888888665.444444458999**************************9986 PP

  == domain 2  score: -0.1 bits;  conditional E-value: 0.092
        DctQ  15 lnsslp.w.teelarylfvwlvflgaala 41 
                 l +++p + t   +r+l vwl +l +al+
  KOO23569.1 352 LRTPIPlGyTRYSVRFLWVWLSLLPFALV 380
                 55677766677788888888888877763 PP

  == domain 3  score: -0.2 bits;  conditional E-value: 0.099
        DctQ  21 wteelarylfvwlvflgaalal 42 
                 w +  + +l v++ f+g++   
  KOO23569.1 392 WEDKPQPVLTVAMLFIGFVFLS 413
                 4555666666777777666544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (468 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       401  (0.022366); expected 358.6 (0.02)
Passed bias filter:                      347  (0.0193541); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.54u 0.25s 00:00:00.79 Elapsed: 00:00:00.44
# Mc/sec: 3184.51
//
Query:       KOO23570.1  [L=319]
Description: calx-beta domain-containing protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.2e-06   28.4  24.4      0.035   14.1   1.6    3.7  3  SBBP      Beta-propeller repeat


Domain annotation for each model (and alignments):
>> SBBP  Beta-propeller repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.2   3.1   7.5e-06      0.13       1      31 [.      18      50 ..      18      54 .. 0.86
   2 !   14.1   1.6     2e-06     0.035      12      30 ..     148     166 ..     143     167 .. 0.88
   3 !   12.9   4.6   4.8e-06     0.086       1      30 [.     199     227 ..     199     227 .. 0.96

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 7.5e-06
        SBBP  1 qWstqlGgpgasty..gngIavDsnGNiYvtGs 31
                +Ws q+Gg ++ ty  gngI  D  G ++++G+
  KOO23570.1 18 DWSIQVGGIQDGTYpaGNGIVHDYAGGAFIAGD 50
                5******88888863369**************6 PP

  == domain 2  score: 14.1 bits;  conditional E-value: 2e-06
        SBBP  12 stygngIavDsnGNiYvtG 30 
                 + yg+gIa+D  G + vtG
  KOO23570.1 148 NSYGYGIATDGVGGAHVTG 166
                 468**************** PP

  == domain 3  score: 12.9 bits;  conditional E-value: 4.8e-06
        SBBP   1 qWstqlGgpgastygngIavDsnGNiYvtG 30 
                 +W  q Gg+++ + g+gI++D  G + vtG
  KOO23570.1 199 DWAVQAGGTSS-DGGYGITTDGVGGALVTG 227
                 5999******9.99***************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (319 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       344  (0.0191868); expected 358.6 (0.02)
Passed bias filter:                      230  (0.0128284); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.26s 00:00:00.67 Elapsed: 00:00:00.40
# Mc/sec: 2400.26
//
Query:       KOO23571.1  [L=54]
Description: hypothetical protein Ctob_009807 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (54 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       404  (0.0225333); expected 358.6 (0.02)
Passed bias filter:                      256  (0.0142785); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.24s 00:00:00.55 Elapsed: 00:00:00.37
# Mc/sec: 435.75
//
Query:       KOO23572.1  [L=4148]
Description: dynein heavy chain [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
   1.3e-154  514.0   0.6   1.8e-153  510.3   0.0    2.7  3  AAA_6           Hydrolytic ATP binding site of dynein motor r
     4e-125  418.0   1.5     4e-125  418.0   1.5    3.0  3  DHC_N2          Dynein heavy chain, N-terminal region 2
   3.7e-112  374.5   0.2   5.9e-111  370.6   0.0    2.9  3  Dynein_C        Dynein heavy chain C-terminal domain
    1.5e-96  322.7   0.0    3.3e-96  321.6   0.0    1.6  1  AAA_8           P-loop containing dynein motor region D4
    1.5e-77  259.7   3.7    2.3e-77  259.0   0.5    2.5  2  AAA_9           ATP-binding dynein motor region
    1.9e-60  203.5   3.0    2.6e-55  186.8   0.0    4.6  4  AAA_7           P-loop containing dynein motor region
    4.7e-46  156.6   0.0    1.3e-45  155.2   0.0    1.8  1  AAA_lid_11      Dynein heavy chain AAA lid domain
    8.8e-40  135.5   0.0    8.4e-39  132.3   0.0    2.7  2  Dynein_heavy    Dynein heavy chain region D6 P-loop domain
    3.9e-39  134.6  14.8    9.8e-39  133.3  14.8    1.7  1  MT              Microtubule-binding stalk of dynein motor
    6.1e-27   94.3   0.0    2.5e-26   92.3   0.0    2.2  1  Dynein_AAA_lid  Dynein heavy chain AAA lid domain
    2.1e-15   56.7   0.0    7.4e-15   55.0   0.0    2.0  1  AAA_lid_1       AAA+ lid domain
    4.9e-13   49.3   0.0     0.0031   17.5   0.0    5.6  4  AAA_5           AAA domain (dynein-related subfamily)
    5.1e-06   27.0   0.2        1.9    8.8   0.0    5.1  4  AAA_16          AAA ATPase domain
     0.0013   19.0   0.8         15    5.9   0.0    4.1  3  AAA_22          AAA domain
     0.0022   18.4   1.7       0.45   10.9   0.0    4.7  4  AAA             ATPase family associated with various cellula
     0.0033   17.2   1.8        3.2    7.4   0.1    3.6  3  AAA_30          AAA domain
     0.0037   15.9   3.3        6.4    5.2   0.0    3.3  3  DUF853          Bacterial protein of unknown function (DUF853
     0.0044   17.6   0.1       0.73   10.4   0.0    3.2  2  AAA_18          AAA domain
     0.0072   16.7   0.6        1.5    9.3   0.0    3.7  2  RNA_helicase    RNA helicase
  ------ inclusion threshold ------
       0.62   10.5   5.5         32    5.0   0.3    3.9  3  HrpB2           Bacterial type III secretion protein (HrpB2)
        1.7    8.3   3.8        7.3    6.3   0.0    3.1  3  AAA_24          AAA domain
        5.4    7.1   6.9        8.3    6.5   0.8    3.0  3  DUF3856         Domain of Unknown Function (DUF3856)
        7.2    5.9   7.9         20    4.4   0.0    4.3  5  FtsK_SpoIIIE    FtsK/SpoIIIE family


Domain annotation for each model (and alignments):
>> AAA_6  Hydrolytic ATP binding site of dynein motor region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  510.3   0.0  2.3e-156  1.8e-153       1     327 []    1402    1728 ..    1402    1728 .. 1.00
   2 ?   -4.1   0.2       7.8   6.1e+03      17      47 ..    2071    2102 ..    2059    2110 .. 0.64
   3 ?    0.8   0.0      0.25     2e+02     205     237 ..    2305    2340 ..    2279    2376 .. 0.68

  Alignments for each domain:
  == domain 1  score: 510.3 bits;  conditional E-value: 2.3e-156
       AAA_6    1 YgyeYlgnserLviTpltdrcyltltqAlklklggapaGpagtGKtEtvkdLakalakqvvvfncsdqldykslgkifkGlaqsGaWgCfdeFnrie 97  
                  YgyeYlg+s+rLv+Tpltdrcy+tl+ A+++klggapaGpagtGKtE+vkdLakalakq+vvfncsd+ldyk++gk+fkGl+++GaW+CfdeFnri+
  KOO23572.1 1402 YGYEYLGASARLVVTPLTDRCYMTLMGAMHIKLGGAPAGPAGTGKTESVKDLAKALAKQCVVFNCSDGLDYKAMGKFFKGLSTAGAWACFDEFNRID 1498
                  9************************************************************************************************ PP

       AAA_6   98 levLSvvaqqiktiqqalkekkkkfvfegkeiklnksvgifitmnpgyagrteLPdnLkalfRpvammvPdlelIaeimLfseGfkeakelakklvt 194 
                  +evLSvvaqq+ ti +a+ ++k+ f feg+++kl+++++ fitmnpgyagr+eLPdnLkal+Rp+ammvPd++lIaei Lfs Gf+++k la+klv 
  KOO23572.1 1499 IEVLSVVAQQMLTIVNACIQEKEWFDFEGTNVKLDSTTSNFITMNPGYAGRSELPDNLKALYRPMAMMVPDYALIAEIRLFSFGFDKSKPLAQKLVG 1595
                  ************************************************************************************************* PP

       AAA_6  195 lykllseqlskqdhydfglralksvlkaagelkreepeeseeelllralrdvnlpklvaeDvplfkglisdlFpgvelpesdyeeleeaieevlkek 291 
                  +++l+seqls+qdhydfg+ra+++v++aag+lk++ pe++e+  +lra+rd+nlpk++++D+ lf+++i+dlFpgv  p+  y++le+++++v+ke+
  KOO23572.1 1596 TFRLSSEQLSSQDHYDFGMRAVNTVIQAAGNLKKDYPEMEEDLQMLRAMRDSNLPKFLRDDILLFRAIIKDLFPGVVEPNAVYAKLEAELASVAKEM 1692
                  ************************************************************************************************* PP

       AAA_6  292 klqleekfvekviqlyetlkvrhgvmlvGetgsgKt 327 
                  +lq+   f+ k+iqlye+++vrhg+m vG++g+gKt
  KOO23572.1 1693 GLQVPVDFTVKCIQLYEMTTVRHGMMTVGPSGGGKT 1728
                  ***********************************8 PP

  == domain 2  score: -4.1 bits;  conditional E-value: 7.8
       AAA_6   17 ltdrcyltltqAl.klklggapaGpagtGKtE 47  
                      cy+ l++ l k k  + + G++gt Kt 
  KOO23572.1 2071 TASVCYTYLLDTLlKGKKHTLVVGSTGTAKTV 2102
                  44567777666542556667777777777775 PP

  == domain 3  score: 0.8 bits;  conditional E-value: 0.25
       AAA_6  205 kqdhydfglralksvlkaagel.kreepe..eseee 237 
                   + hy f+lr +  v++ +  + kr+++e  + e+ 
  KOO23572.1 2305 AKPHYTFNLRDVSKVVQGVLMAdKRAKKEgtKMEDI 2340
                  578*********999987666556665541133333 PP

>> DHC_N2  Dynein heavy chain, N-terminal region 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.3   0.7      0.37   2.9e+02      44      86 ..     682     735 ..     652     748 .. 0.66
   2 ?   -1.8   2.2       1.6   1.2e+03       4      81 ..     717     805 ..     714     834 .. 0.44
   3 !  418.0   1.5  5.1e-128    4e-125       1     396 [.     849    1254 ..     849    1255 .. 0.96

  Alignments for each domain:
  == domain 1  score: 0.3 bits;  conditional E-value: 0.37
                 XXXXXXXXXXXXXXXXXX...........XXXXXXXXXXXXXXXXXXXXXXXXX CS
      DHC_N2  44 evkellkklkklpkalke...........wevakelkekieefkevlplieelr 86 
                 +++e++ +l++ pk++++           + + +el+++i+++ e+ +++eel+
  KOO23572.1 682 KFEEMFGQLQEQPKDIEKlteisefiatvQTASEELQADIDKMTEHYEVLEELQ 735
                 223444444444444444444555666777888899999999999999999886 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 1.6
                 XXXXXXXXXXXXXXXXXXXXXXXX......X.....XXX.......XXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
      DHC_N2   4 ikkelellkklwdlvsewqeklee......wkktpfkel.......dve.eleeevkellkklkklpkalkewevakelkekieefkevlpl 81 
                 ++++++++++ +++++e q +  +      w++ ++  l       ++   +ee+ + + k++++ ++++    +++el e+++ef ++ +l
  KOO23572.1 717 LQADIDKMTEHYEVLEELQFETPQedftarWETFHWP-LrlklkqeECYkMMEEDRQLFNKEMEQQQQQF--DLAVAELAERVSEFGKHTDL 805
                 5666666666666666664443334444455444442.30111222222122222222223333333222..44555666666666555544 PP

  == domain 3  score: 418.0 bits;  conditional E-value: 5.1e-128
                  XXXXXXXXXXXXXXXXXXXXXXXXXXXX.....XXXXXXXXXXXXXXXXXXXXXXXXXXXX...XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
      DHC_N2    1 leeikkelellkklwdlvsewqekleewkktpfkeldveeleeevkellkklkklpkalke...wevakelkekieefkevlplieelrnpalrerH 94  
                  l+ i k++e+++++w  + ewq+  ++w ++p+ +ld++++e + ++  + + k +k++k+    ++ak++k++++ f+++lp++++lrnp++r+rH
  KOO23572.1  849 LQRINKDFEPYRDMWINAAEWQKWARDWLDGPMINLDPDAVERDYTNSSRVMAKATKTFKDspvGNIAKQIKAEMDVFRPFLPVVTSLRNPGMRDRH 945 
                  6899*********************************************************99999******************************* PP

                  XXXXXXXX..XXXXXXXX.XXXXXXXX.XXXX....XXXXXXXXXXXXX-HHHHHHHHHHHHHHTS---EEEE-SSS.TEEE..THHHHHHHHHHHH CS
      DHC_N2   95 wkelsellgvikdpdseesltlgdlle.lgll....eeeieeisekAtkEaslekalkkieeewkelefelteykdsgvfilkgvdeiielledhiv 186 
                  w+ l + lg+    + ++ +tl+   + ++l+     e +++++e+A kE+++ekal+++e+ w+ + fe+++y+++g++++k  +e+ +ll+d+iv
  KOO23572.1  946 WEALTADLGM--PLKVDDVFTLRTATDtMKLHepktLERVQKVCERALKEYTIEKALNDMEAAWQPQDFEVMAYRNTGTSVIKLSEEVNTLLDDNIV 1040
                  ********85..355667899999988347754556888*******************************************99************* PP

                  HHHHTCSSSTT..THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT.THHHHHHTHHHHHHHHHHHHHHHHHHHHHHTTSGGGG...STTHHHH CS
      DHC_N2  187 klqsmksspyvkpfeeeveewekklsrlqeildewlkvQrkWlyLepifssedirkqlpeeakrFksvdkewkkimkevskdpnvleatskpgllek 283 
                   +q+ + spy +pfee++ +we++l+ +qe+ +ewl +Qr+W+yL+pif sedi++qlp eakrF++vd+ w+k++ +v k p++++++++++lle+
  KOO23572.1 1041 LTQQFSFSPYKGPFEERIADWERRLRLVQEVTSEWLGCQRNWMYLQPIFDSEDIQRQLPAEAKRFSNVDRLWRKTLDRVGKAPKIIAFCNDDELLEQ 1137
                  ***********99************************************************************************************ PP

                  HHHHHHHHHHHHHHHHHHHHHHHHHSTTHHHH-HHHHHHHHHTTTTSGGGHHHHHHHHSSEEEESE......EEEEEETTS-EEEEE.....E.EEE CS
      DHC_N2  284 leelneqlekiqksLneyLekkRlafpRFyFlsddeLleilsqskdpsavqphlkkcFegiaslefee.kkeitgmiskegEkvelse...argnve 376 
                    ++n++le++qk+L++yLe+kR+af RFyFls+deL++ilsq+kdp+avqphl+kcFe++  ++++  +  +t mis+e+E+v++ +    +g+ve
  KOO23572.1 1138 WIKSNNELERVQKNLSDYLETKRAAFARFYFLSNDELISILSQTKDPNAVQPHLRKCFEAVFAVTMKGkDCAMTDMISPEKEVVPFVTtiyPKGSVE 1234
                  ******************************************************************99555567************999*999**** PP

                  HHHHHHHHHHHHHHHHHHHH CS
      DHC_N2  377 eWLneleeemkktlkellke 396 
                   W+  +ee+m+ ++++l+++
  KOO23572.1 1235 VWMGVIEEMMRLSVRKLVED 1254
                  ****************9987 PP

>> Dynein_C  Dynein heavy chain C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.1       1.1   8.8e+02     171     198 ..     708     735 ..     681     749 .. 0.78
   2 ?   -0.7   0.1      0.82   6.4e+02      73     117 ..    1309    1354 ..    1303    1380 .. 0.80
   3 !  370.6   0.0  7.5e-114  5.9e-111       2     306 ..    3841    4143 ..    3840    4144 .. 0.93

  Alignments for each domain:
  == domain 1  score: -1.1 bits;  conditional E-value: 1.1
                 HHHHHHHHHTT-----EE--EE---... CS
    Dynein_C 171 avlqnyarknkipideltfefevtkkek 198
                 a+ q+++ + +  id++t ++ev+++ +
  KOO23572.1 708 ATVQTASEELQADIDKMTEHYEVLEELQ 735
                 7889*******************97433 PP

  == domain 2  score: -0.7 bits;  conditional E-value: 0.82
                  HHHHHHHHHHHHHHHHHH.C---------HHHHHHHHHHHHTS--G CS
    Dynein_C   73 erfnkLleeirrsLkelq.kaikGevvmseeleelansllngkvPe 117 
                   ++++L   +r++L++lq k+++ ++v+  + +++++ l++gk+ +
  KOO23572.1 1309 GQLKELSLLVRTKLNKLQnKVMSALIVIEVHARDVVERLIEGKCSA 1354
                  578899999********8468899999**************99866 PP

  == domain 3  score: 370.6 bits;  conditional E-value: 7.5e-114
                  HHHHHHHHHHHHCCCTTT-------..CCH--------------..----...........-HHHHHHHHHHHHHHHHHHHHHHHHHHHHC------ CS
    Dynein_C    2 keteellstllslqpressssgsggssreekvlelaadileklpelfdleeaekk.pteyeeplntvllqElerfnkLleeirrsLkelqkaikGev 97  
                  +et++l++ +lslqpr+ss   +gg+sre+ ++ela+di e++p+ f+le++++  pt+y+e++ntvl+qE+ r+nk++++++ sL++++k++kGev
  KOO23572.1 3841 NETKNLFNVVLSLQPRASS---GGGKSREQLLDELAKDIFEQMPAPFNLEKVSDAyPTTYTESMNTVLQQECIRYNKVINKVSASLRDVRKGLKGEV 3934
                  79**************753...467889****************99****865557***************************************** PP

                  ---HHHHHHHHHHHHTS--GGG.-----SS--HHHHHHHHHHHHHHHHHHH---.....B-GGGSS-HHHHHHHHHHHHHHHTT-----EE--EE-- CS
    Dynein_C   98 vmseeleelansllngkvPesWakksypslkplgsWvrdLleRvkqlqkwleeegkPkvfwLsgfffPqaFLtavlqnyarknkipideltfefevt 194 
                  vm++el+++ +sl+n++vPe+Wak +ypslkpl+sWv dLl+R+  +q w  +egkP++fw+sgf+fPqaF+t+v+qn+ark+++pid++t+ +++ 
  KOO23572.1 3935 VMTAELDAMGTSLFNNQVPEMWAKVAYPSLKPLASWVPDLLKRIGYIQLWF-DEGKPPSFWISGFYFPQAFITGVMQNHARKYQLPIDTITYGYDMR 4030
                  **********************999**************************.6689****************************************9 PP

                  -...............-EEE-SEEEESSEE..ETTCEE-SS...SEEEES-EEEE-E----TS......EEEEEESSTT--SE..........EEEE CS
    Dynein_C  195 kkekeeea..eeepedGvyihGLfleGarwdkkegvLaesepkelfselPvihlkpveakkkekkkkk.yecPvYktseRrgvlstt.hstnfvfsv 287 
                  +++  e++  + +++dG++i+GLf+eGarwd k++ Laes+pkelf+elP ihl pv ++k+   +   y cPvYkts+R gvlstt hstnfv+s+
  KOO23572.1 4031 DETV-EQIkiSGPADDGAFIYGLFIEGARWDMKSHLLAESRPKELFTELPLIHLLPVANRKR--PEGGfYFCPVYKTSSRFGVLSTTgHSTNFVMSI 4124
                  7433.33344777778****************************************976666..33325**************************** PP

                  EE.....-BHHHTTT-EEE CS
    Dynein_C  288 dLptkkpeehwilrgvall 306 
                  ++p++ p+ehwi+rg+a+l
  KOO23572.1 4125 EIPSNVPQEHWIKRGTAAL 4143
                  *****************97 PP

>> AAA_8  P-loop containing dynein motor region D4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  321.6   0.0   4.3e-99   3.3e-96       1     257 [.    2433    2690 ..    2433    2693 .. 0.98

  Alignments for each domain:
  == domain 1  score: 321.6 bits;  conditional E-value: 4.3e-99
       AAA_8    1 ldLvlfedaiehlarilRvlrqprghaLlvGvgGsGrqsltkLAafiaelelfqievtkkykekefredlkkllkkagikqkevvfllsdnqiiees 97  
                  ++Lvlf dai h++ri+Rvlrqp+g++Ll+GvgGsGrqslt+LA+++a++++fqie+tk+y + e+redlk++l++agi+ ++vvfl+ d+qi++e 
  KOO23572.1 2433 MNLVLFADAISHVCRISRVLRQPSGNCLLLGVGGSGRQSLTRLACHLADFKCFQIEITKNYRTLEWREDLKTVLRMAGIELRPVVFLFVDTQITDEI 2529
                  9************************************************************************************************ PP

       AAA_8   98 fledinnlLntGevpnLfskeekeeiieelrkeakkqgvedskesllnffikrvrenLhivlcmspvgeafrsrlrkfpsLvncttidwfqeWPeea 194 
                  fle+inn+L+ GevpnLf++ ++  i+++++  + ++gv  +k +l ++fik +++ L+ivl+msp+g+++ +r+r+fpsL+nc+tidwf +WP ea
  KOO23572.1 2530 FLENINNILSAGEVPNLFEDADMGPIFDKMTPLCLQAGVPANKTNLSSMFIKMCKKFLKIVLAMSPLGDDYANRIRQFPSLINCSTIDWFSPWPPEA 2626
                  ************************************************************************************************* PP

       AAA_8  195 LleVaekvlee.eeeieeelkesivkvlvevhssveelsekfleelkrkiyvtpksylellkty 257 
                  L++Va++++ +  e+ ++++ + iv+++ ++h+sv+  s+ flee++r++yvt++sylel+++ 
  KOO23572.1 2627 LQAVARTLMVKeAEQNDAKTFDGIVDMCTFMHNSVRVKSQAFLEEMRRYNYVTSTSYLELINVI 2690
                  *******997757888889999***************************************975 PP

>> AAA_9  ATP-binding dynein motor region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.4   0.1      0.38     3e+02     169     215 ..    1132    1183 ..    1129    1186 .. 0.79
   2 !  259.0   0.5     3e-80   2.3e-77       1     220 []    3083    3307 ..    3083    3307 .. 0.96

  Alignments for each domain:
  == domain 1  score: 0.4 bits;  conditional E-value: 0.38
                  HHHHHHHHHHHHHHHHHHHHHHHHHHHSSSSS.....STHHHHHHHHHHHHH CS
       AAA_9  169 eeliqeeaenkkqlkeledklLeeLseaegni.....LedeelietLeksKk 215 
                  +el+++  + +++l++++++l + L++ +        L+++eli+ L+++K+
  KOO23572.1 1132 DELLEQWIKSNNELERVQKNLSDYLETKRAAFarfyfLSNDELISILSQTKD 1183
                  5788888889999999999998888887664333333*************97 PP

  == domain 2  score: 259.0 bits;  conditional E-value: 3e-80
                  .HHH.HT--STHHHHHHHHHHH..SSEEEEESSSTTHHHHHHH.......HEESTT..STTHHHHHHHHHHTTSEEEESTT.SSHHSTTHHHHTTCC CS
       AAA_9    1 reWnlqgLPsDelsieNaiivtkserwPlliDPqgqankwiknk.ekeklkvikls..dkkflktLenairfGkplliedvgeeldpiLepvLekei 94  
                  r+Wn++gLP+D +s+eN+ii++ ++rwPl+iDPqgqan+++k   +k ++k++k+s   kk+++tLe air+G+p+lie+v e+ldp+L+pvL++++
  KOO23572.1 3083 RQWNMDGLPADAFSVENGIIMSITKRWPLMIDPQGQANRFLKLSqAKMQIKTVKASdsAKKVVQTLEMAIRLGTPMLIENVVESLDPFLDPVLANQT 3179
                  69****************************************9867788999999966679************************************ PP

                  EE....CEEEESSSE.EE--SSCEEEEEESSTTSHHHHHHHHHSEEEE---SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
       AAA_9   95 ikk..grkliklgdkeieysenFrLylttklsnphyspeiaakvtlinFtvteeGLedqlLaevvkkerpeleekkeeliqeeaenkkqlkeledkl 189 
                  +k+  g+ +iklg++ i ++++F++ ltt  +nphy pe+++kv l+nF++t+ GLedqlL  +v++erp+l ekk el+ ++a+nk +l+el+d++
  KOO23572.1 3180 YKDssGSLVIKLGENVIPFHSDFKFALTTVIPNPHYAPEVSVKVALLNFAITQGGLEDQLLVSTVETERPDLAEKKAELVVQSAANKAKLQELQDEI 3276
                  **5336******************************************************************************************* PP

                  HHHHHHSSSSSSTHHHHHHHHHHHHHHHHHH CS
       AAA_9  190 LeeLseaegniLedeelietLeksKktaeei 220 
                  L  L++++g+iL+d++li+tL  sK t +ei
  KOO23572.1 3277 LYLLANSQGDILDDTNLIDTLGVSKVTTDEI 3307
                  **************************99887 PP

>> AAA_7  P-loop containing dynein motor region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.6   0.0     0.013        10      38      63 ..    1438    1462 ..    1409    1476 .. 0.74
   2 ?    2.4   0.0      0.12        97     107     172 ..    1492    1559 ..    1473    1568 .. 0.80
   3 ?    5.3   0.1     0.016        13      27      58 ..    1708    1739 ..    1691    1745 .. 0.76
   4 !  186.8   0.0   3.3e-58   2.6e-55       6     180 ..    2060    2252 ..    2052    2253 .. 0.89

  Alignments for each domain:
  == domain 1  score: 5.6 bits;  conditional E-value: 0.013
       AAA_7   38 lvGptGtGKtviikdllkkldkekyl 63  
                    Gp+GtGKt  +kdl k+l k+ ++
  KOO23572.1 1438 PAGPAGTGKTESVKDLAKALAKQ-CV 1462
                  57*****************9944.33 PP

  == domain 2  score: 2.4 bits;  conditional E-value: 0.12
       AAA_7  107 DDlnmpakek..ygaqppiellRqlldyggwYdrkklefkeikdvqlvaamgppgggrneitpRllrh 172 
                  D++n    e     aq+ ++++  +++++ w+d + +++k    ++    m+p   gr+e++  l+  
  KOO23572.1 1492 DEFNRIDIEVlsVVAQQMLTIVNACIQEKEWFDFEGTNVKLDSTTSNFITMNPGYAGRSELPDNLKAL 1559
                  666665555411469********************999987778888999***999999998877665 PP

  == domain 3  score: 5.3 bits;  conditional E-value: 0.016
       AAA_7   27 elllknkkpvllvGptGtGKtviikdllkkld 58  
                    + + ++ ++ vGp+G GKt +++ l ++++
  KOO23572.1 1708 YEMTTVRHGMMTVGPSGGGKTKVLRVLQSAMS 1739
                  346788999************99987766665 PP

  == domain 4  score: 186.8 bits;  conditional E-value: 3.3e-58
       AAA_7    6 eakfseilVptvdtvrysyllelllknkkpvllvGptGtGKtviikd.llkkldkek........ylsltinfsaqtsanqlqdiiesklekrrkgv 93  
                  +a++ +++Vpt+ +v+y+yll++llk kk++l+vG+tGt+Ktv++++ l++ l+++         + ++++ f aqtsanq+qdi++sk++krr+gv
  KOO23572.1 2060 QAEYPSLIVPTTASVCYTYLLDTLLKGKKHTLVVGSTGTAKTVVVQQkLTRGLEQKYlgsgplpgFEPIMMAFAAQTSANQTQDILDSKFDKRRQGV 2156
                  678899*****************************************8999998553222222225799*************************975 PP

       AAA_7   94 ..........ygPpggkklvvFvDDlnmpakekygaqppiellRqlldyggwYdrkklefkeikdvqlvaamgppgggrneitpRllrhfnvlaite 180 
                            +gP  gk++ +F+DD+nmp++e+ygaqppie++Rql++ ggwYdrk + +++i+d++l++amgppgggr+ +++R++rh+++l++t+
  KOO23572.1 2157 dkdtglqytmWGPMLGKQFAIFIDDFNMPKRETYGAQPPIEIVRQLVE-GGWYDRKIFRMRQIVDCTLIGAMGPPGGGRQIMSNRMIRHMHMLTFTD 2252
                  55555554449***********************************97.89******************************************9875 PP

>> AAA_lid_11  Dynein heavy chain AAA lid domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  155.2   0.0   1.7e-48   1.3e-45       1     164 []    3672    3834 ..    3672    3834 .. 0.92

  Alignments for each domain:
  == domain 1  score: 155.2 bits;  conditional E-value: 1.7e-48
                  HHHHHHHHCT-HHHHT............HHHHHHHHHHHHHHHHHGGGGTTTS-SS-----HHHHHHHHHHHHHHHHHCSSGGS-HHHHHHHHHHTT CS
  AAA_lid_11    1 kanllraysnesekideeffee..keeefkkllfsLcffHavvqeRrkFgplGwnipYeFnesdleisvevlkmyldeyeekevpwealkyligein 95  
                  +anl+ ++++    i ee+fe+  + + ++k++f+L +  av++eRrkFgplGwnipY+F+++d ++ +++ +m++++y+  e+p++ ++ l++e+n
  KOO23572.1 3672 RANLRATFAA----IPEEVFEStkRPADWRKIMFGLLLHCAVILERRKFGPLGWNIPYQFTDGDRDMVIKQTEMLVNDYD--EIPYKVITSLTTEVN 3762
                  79******55....66788887645666****************************************************..*************** PP

                  TSTT--SHHHHHHHHHHHHHHSSGGGGSTT...-..T...E.---SSHHHHHHHHCTS-SS--CCCCTS-TTH CS
  AAA_lid_11   96 YGGrvtDdwDrrllktyleeffseevleeeyk.s..geyki.peeksleeyleyieslpladspevfglhena 164 
                  YGGrvtD+wDrr+ +++l  f++ +v++ +yk s  g y+  p  ++ e+y++y+++lp++ +pe+fglh+na
  KOO23572.1 3763 YGGRVTDSWDRRTSNALLIPFCNIDVTKPDYKfSanGIYRSiPG-ETKEDYMKYLNDLPVNAPPEIFGLHDNA 3834
                  ******************************99735577777465.59*************************8 PP

>> Dynein_heavy  Dynein heavy chain region D6 P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.0         3   2.3e+03      24      74 ..    3126    3176 ..    3111    3222 .. 0.61
   2 !  132.3   0.0   1.1e-41   8.4e-39       3     119 .]    3552    3671 ..    3550    3671 .. 0.94

  Alignments for each domain:
  == domain 1  score: -1.4 bits;  conditional E-value: 3
                    HHHTT--EEEEETTSHHHHHHHHHHHHHHHHT-EEEEE-GGG-.CCCHH.HHH CS
  Dynein_heavy   24 akklkklvksvslGqgqeeeaekalekaakegsWvlLqNchla.pswlk.eLe 74  
                    ++  k ++k+v   + + +++ ++le a++ g+ +l++N+  +   +l+  L+
    KOO23572.1 3126 SQA-KMQIKTVKASD-SAKKVVQTLEMAIRLGTPMLIENVVESlDPFLDpVLA 3176
                    332.22234555444.5558999****************97663445554444 PP

  == domain 2  score: 132.3 bits;  conditional E-value: 1.1e-41
                    TS-EEEEE-TT--THHHHHHHHH..HTT--EEEEETTSHHHHHHHHHHHHHHHHT-EEEEE-GGG-CCCHHHHHHH........HHTT-EEEEEE CS
  Dynein_heavy    3 ttPvlfilspgadptesleklak..klkklvksvslGqgqeeeaekalekaakegsWvlLqNchlapswlkeLekileel.eeklhssfRlwlts 94  
                    + P++fil +gadp++ l ++a+   +++ + ++slGqgq+++ae++++ +   g+WvlL Nchl +sw+++Le+ +e +  +k+++sfRlwlts
    KOO23572.1 3552 SLPLIFILVSGADPVKGLIQYAElsGMGEKIDYISLGQGQGPKAEALIKGGKDGGRWVLLMNCHLFVSWMPQLEREVEGIdPNKTDPSFRLWLTS 3646
                    57*********************55558888**********************************************977777889********* PP

                    ES-TTS-HHHHHTSEEEEE---SSH CS
  Dynein_heavy   95 epspkfPislLqssikvtnepPkgl 119 
                    +ps+kfP+s+Lq+++k+tnepPkgl
    KOO23572.1 3647 MPSAKFPVSVLQNGVKMTNEPPKGL 3671
                    ***********************97 PP

>> MT  Microtubule-binding stalk of dynein motor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  133.3  14.8   1.3e-41   9.8e-39       3     338 ..    2708    3054 ..    2706    3059 .. 0.85

  Alignments for each domain:
  == domain 1  score: 133.3 bits;  conditional E-value: 1.3e-41
          MT    3 lengllklqstaaqvddlkaklaaqe.velkqknedadkliqvvgvetekvskekaiadeeekkvavinkevkkkqkdceedlakaepallaaqeal 98  
                  l  gl kl++t + + dlk kla ++ v  + k e  ++ iq+   + e     ka a+      +    e +  + + e  la a pal aa ++l
  KOO23572.1 2708 LTVGLDKLKATKTIIADLKQKLADNQpVLERTKVEVGEQQIQIAK-DKEDAQVVKAEAEVSSAAANKKSAECAGIKASAEAGLAEALPALDAAVKCL 2803
                  5679*******************76515556799999*****864.333333444444444444444455666667788999*************** PP

          MT   99 ntlnktnltelksfgsppdavvnvaaavmvlla.prgkvpk........drswkaakivmakv..dafldslinfdkenihenclkaikeylndpef 184 
                    l+k+++ e+k++  pp+ v     av ++    + k+p         d  w  a  +++ +  d f ++li+fdk+ni  + +  i +     +f
  KOO23572.1 2804 AKLDKSQIVEVKALKKPPEGVRTTLMAVAIMFEiKSVKIPDpdnpqkkiDDYWGPASKMLNDLgpDKFKQALIDFDKDNISPKVIANIDPVCAMETF 2900
                  *********************998888777654144566633222234467899999999986669******************************* PP

          MT  185 epefikskslaaaglcswvinivrfyevycdvepkrqalekanaelaaaqeklaaikakiaelnanlaeltaafekatadklkcqqeaeatartisl 281 
                   pe i   s+a+  +c wv  + ++y v  +vepkr+ l  a+ el +a     a  ak+  + + +a l aa+ ka+ +k+    eae+++ t++l
  KOO23572.1 2901 TPEAIVKVSVACEAMCLWVHAMRKYYYVALEVEPKRKQLAAAEIELGEATASKRAAEAKLDAVTKRVAALEAAL-KAAVEKMA-SLEAEVAKCTVQL 2995
                  ***************************************************999*****************998.67788886.5688988888887 PP

          MT  282 ..anrlvgglasenvrwaeavenfksqektlcgdvllitafvsyvgfftkkyrqelldr 338 
                    a++l+ gl+ e   w e v  +k+q + ++gdvl+ +  +sy+g ft  yr +l   
  KOO23572.1 2996 vnADKLILGLSGEAKSWEEMVVVLKEQVQNVTGDVLVCAGAISYMGPFTAPYRASLTSE 3054
                  33569*************************************************99764 PP

>> Dynein_AAA_lid  Dynein heavy chain AAA lid domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   92.3   0.0   3.2e-29   2.5e-26       1     127 [.    1913    2044 ..    1913    2046 .. 0.89

  Alignments for each domain:
  == domain 1  score: 92.3 bits;  conditional E-value: 3.2e-29
  Dynein_AAA_lid    1 leelfeklvepclefvrkkckeivpvtdlnlvqslcrllealldefeekeeesad...eeleeeeleevleklflfalvWSiGatldedsrek 90  
                      l++lf++++ p+ e +r +++++++ +  n v+ ++rl+++l+ ++  + + +++   ++++ e + +++e+lf++al+W++G+t+de++r+k
      KOO23572.1 1913 LSSLFNQYIVPMTELLRLEMRQPIAAVMPNTVMGVMRLIDCLFLPYMIDPNAEPNpeaDKAKIEAMPKLIEPLFFMALIWGVGGTTDEAGRAK 2005
                      689***************************************998765444444411155667788999************************ PP

  Dynein_AAA_lid   91 fdeflrellee...alklppeegtvyDyffdketgkWkpW 127 
                      fd  lr+l+++   ++ lp   +tvyDy++  et +W +W
      KOO23572.1 2006 FDVTLRDLIKKngtKVGLP-PGDTVYDYTYIAETSTWAKW 2044
                      ********99989999999.******************** PP

>> AAA_lid_1  AAA+ lid domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.0   0.0   9.5e-18   7.4e-15       1      81 [.    2285    2369 ..    2285    2386 .. 0.82

  Alignments for each domain:
  == domain 1  score: 55.0 bits;  conditional E-value: 9.5e-18
   AAA_lid_1    1 lvaaalalhkkiaatflptaikfhyvfnlrdlsnifqgllfssaevlkapl...dlirlylheservygdkmveekdlell.ekv 81  
                  +v+a++a+++     + pt  k hy fnlrd+s + qg+l++     k      d++r+++hes rv+ d++++++d + + e+v
  KOO23572.1 2285 VVQATVAIYQAALGYLRPTPAKPHYTFNLRDVSKVVQGVLMADKRAKKEGTkmeDIVRIWVHESSRVFSDRLINDEDRKWFlEQV 2369
                  6899999*999999999*************************9998885432349**********************98762444 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.7   0.0    0.0021       1.7       6      40 ..    1440    1474 ..    1439    1559 .. 0.82
   2 !   17.5   0.0   3.9e-06    0.0031       3     138 .]    1718    1869 ..    1716    1869 .. 0.91
   3 !   10.2   0.0   0.00074      0.58       1     135 [.    2089    2242 ..    2089    2245 .. 0.80
   4 ?    5.2   0.0     0.026        20       2      38 ..    2459    2495 ..    2458    2538 .. 0.83

  Alignments for each domain:
  == domain 1  score: 8.7 bits;  conditional E-value: 0.0021
                  --SSSSHHHHHHHGGGGBS--EEEEE--TT--HHH CS
       AAA_5    6 GppGtgKselaerlaaalnreveyvqltrdtteed 40  
                  Gp GtgK+e ++ la+al ++ ++ ++++++ ++ 
  KOO23572.1 1440 GPAGTGKTESVKDLAKALAKQCVVFNCSDGLDYKA 1474
                  9*****************99999999998877665 PP

  == domain 2  score: 17.5 bits;  conditional E-value: 3.9e-06
                  EEE--SSSSHHHHHHHGGGGB..............S--EEEEE--TT--HHHHH--B--.........--------................G-SEE CS
       AAA_5    3 lLvGppGtgKselaerlaaal..............nreveyvqltrdtteedlkgrreikngttslvdsplvraar................egeil 69  
                  + vGp+G gK+++ + l +a+              ++  +y+++++++t ++l g+ ++   t +++d++    +r                 ++++
  KOO23572.1 1718 MTVGPSGGGKTKVLRVLQSAMsrckddkgewisgfEKVRVYKLNPKSITMNQLYGSFDL--ATGEWTDGIGAVLIRhisqpdtnetgvtqenIKWMM 1812
                  569******************************999999*******************9..888899987555555666************999999 PP

                  EEESGGG--HHHHHHHHHHHHSSEEE..-SSSEEE---......-EEEEEESS--.-TT-TTHHHHTT- CS
       AAA_5   70 vlDEveraesevlnsLlslleerrllleeggelvkaknddllerfrviatanpldrslnelspalrsRf 138 
                  +++ v+     +++ ++++l++++ l  ++ge +  +++      rv+++ ++l+     +spa++sR+
  KOO23572.1 1813 FDGPVD---AIWIENMNTVLDDNKKLCLNSGEIIPLAET-----NRVMFEVEDLS----VASPATVSRC 1869
                  999999...99***********************99997.....79****99999....8999999995 PP

  == domain 3  score: 10.2 bits;  conditional E-value: 0.00074
                  EEEEE--SSSSHHHHHHHGGGGB............S--EEEEE--TT--HHHHH--B--..........--------.......G-SEEEEESGGG- CS
       AAA_5    1 dvlLvGppGtgKselaerlaaal............nreveyvqltrdtteedlkgrreik.ngttslvdsplvraar.......egeilvlDEvera 77  
                  + l+vG +Gt+K+ ++++ + +             + e  ++++ ++t++++ +  ++ k +++++ vd+    + +       +   +++D++++ 
  KOO23572.1 2089 HTLVVGSTGTAKTVVVQQKLTRGleqkylgsgplpGFEPIMMAFAAQTSANQTQDILDSKfDKRRQGVDKDTGLQYTmwgpmlgKQFAIFIDDFNMP 2185
                  5799*********999875444347777999999999*********************88966666666666655557789998************* PP

                  -HHHHHHHHHHHHSSEEE..-SSSEEE---.........-EEEEEESS--.-TT-TTHHHH CS
       AAA_5   78 esevlnsLlslleerrllleeggelvkaknddller...frviatanpldrslnelspalr 135 
                  ++e+ ++  ++  e  ++l egg++ ++      ++    ++i+++ p+ ++++ +s +++
  KOO23572.1 2186 KRETYGAQPPI--EIVRQLVEGGWYDRKIFRM--RQivdCTLIGAMGPPGGGRQIMSNRMI 2242
                  *******9555..4555566999999876644..445559*******99988888877665 PP

  == domain 4  score: 5.2 bits;  conditional E-value: 0.026
                  EEEE--SSSSHHHHHHHGGGGBS--EEEEE--TT--H CS
       AAA_5    2 vlLvGppGtgKselaerlaaalnreveyvqltrdtte 38  
                   lL+G  G+g+ +l++  +++   + + + +t+++++
  KOO23572.1 2459 CLLLGVGGSGRQSLTRLACHLADFKCFQIEITKNYRT 2495
                  69********************999999999997654 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.8   0.0    0.0025       1.9      31      59 ..    1440    1465 ..    1439    1511 .. 0.79
   2 ?    4.3   0.0      0.06        47      29      52 ..    1719    1754 ..    1707    1809 .. 0.63
   3 ?    5.1   0.0     0.034        26      16      51 ..    2080    2115 ..    2077    2158 .. 0.77
   4 ?    1.3   0.0      0.51     4e+02      18      46 ..    2450    2478 ..    2440    2542 .. 0.71

  Alignments for each domain:
  == domain 1  score: 8.8 bits;  conditional E-value: 0.0025
      AAA_16   31 GesGvGKsslvrellralekdggiflrgk 59  
                  G++G+GK+  v+ l++al k+ ++f   +
  KOO23572.1 1440 GPAGTGKTESVKDLAKALAKQCVVF---N 1465
                  9*******************95444...2 PP

  == domain 2  score: 4.3 bits;  conditional E-value: 0.06
      AAA_16   29 lsGesGvGKsslvrellralekd............g 52  
                   +G+sG GK++++r l+ a+++             +
  KOO23572.1 1719 TVGPSGGGKTKVLRVLQSAMSRCkddkgewisgfeK 1754
                  58***********99997555434445444444431 PP

  == domain 3  score: 5.1 bits;  conditional E-value: 0.034
      AAA_16   16 lervrsgrpelvllsGesGvGKsslv.rellralekd 51  
                  l+++ +g    +l++G  G+ K+ +v ++l r le++
  KOO23572.1 2080 LDTLLKGK-KHTLVVGSTGTAKTVVVqQKLTRGLEQK 2115
                  66677776.799**************55555555555 PP

  == domain 4  score: 1.3 bits;  conditional E-value: 0.51
      AAA_16   18 rvrsgrpelvllsGesGvGKsslvrellr 46  
                  rv ++ ++++ll G  G+G  sl r + +
  KOO23572.1 2450 RVLRQPSGNCLLLGVGGSGRQSLTRLACH 2478
                  444444499***********999988874 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.9   0.0     0.019        15      12      48 ..    1440    1467 ..    1436    1476 .. 0.83
   2 ?    4.0   0.0     0.072        56      10      49 ..    1719    1764 ..    1713    1801 .. 0.71
   3 ?    4.1   0.1     0.066        52       4      32 ..    2086    2114 ..    2082    2161 .. 0.77

  Alignments for each domain:
  == domain 1  score: 5.9 bits;  conditional E-value: 0.019
      AAA_22   12 GesGtGKTtllrrlleqldeeakaeeerpevvfvtlp 48  
                  G++GtGKT +++ l++ l          +++v ++++
  KOO23572.1 1440 GPAGTGKTESVKDLAKAL---------AKQCVVFNCS 1467
                  9***************99.........5666666655 PP

  == domain 2  score: 4.0 bits;  conditional E-value: 0.072
      AAA_22   10 vtGesGtGKTtllrrlleqldeeakaee......erpevvfvtlps 49  
                   +G+sG GKT +lr l++   + ++ +       e+++v++ +++s
  KOO23572.1 1719 TVGPSGGGKTKVLRVLQSAMSRCKDDKGewisgfEKVRVYKLNPKS 1764
                  58************99887654444444667555555555554444 PP

  == domain 3  score: 4.1 bits;  conditional E-value: 0.066
      AAA_22    4 tagilvvtGesGtGKTtllrrlleqldee 32  
                  ++++++v+G +Gt KT+++++ l +  e+
  KOO23572.1 2086 GKKHTLVVGSTGTAKTVVVQQKLTRGLEQ 2114
                  799***************98766554444 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   0.0       2.1   1.7e+03      46     130 ..    1112    1201 ..    1098    1203 .. 0.74
   2 !   10.9   0.0   0.00058      0.45       5      36 ..    1440    1472 ..    1438    1521 .. 0.85
   3 ?    1.6   0.0      0.46   3.6e+02       1      34 [.    1717    1765 ..    1717    1794 .. 0.71
   4 ?   -0.8   0.0       2.4   1.9e+03       2      63 ..    2460    2520 ..    2459    2524 .. 0.81

  Alignments for each domain:
  == domain 1  score: -0.6 bits;  conditional E-value: 2.1
                  HHHHHHHHHHTSTSEEEEEETGGGHHHHHTTCCCHHHHHHHHHHHHHHHHTTTS.........SSTEEEEEEESSGGGSTHHHHSTTSSEEEET CS
         AAA   46 irelfkeakekakpsilfiDEidalaksrsgseseeeervvnqLlteldgvkkk.........eskvivigatnrpdkldpallrgRfdrkiei 130 
                   r++++++ + a p+i+ + + d+l ++   ++++e erv++ L   l+  +           ++ + ++  t++p+ ++p l+ + f+ ++ +
  KOO23572.1 1112 WRKTLDRVGK-A-PKIIAFCNDDELLEQW-IKSNNELERVQKNLSDYLETKRAAfarfyflsnDELISILSQTKDPNAVQPHLR-KCFEAVFAV 1201
                  5566666543.3.7888887778887777.667889999999999999999999999999995443445556777999999999.899988765 PP

  == domain 2  score: 10.9 bits;  conditional E-value: 0.00058
                  SSTTSSHHHHHHHHHHHHTHEEEEEETTTCS.S CS
         AAA    5 GppGtGKTllakavakelgvefleisgsell.s 36  
                  Gp GtGKT  +k +ak l  +++ +++s+ l  
  KOO23572.1 1440 GPAGTGKTESVKDLAKALAKQCVVFNCSDGLdY 1472
                  9**************************998733 PP

  == domain 3  score: 1.6 bits;  conditional E-value: 0.46
                  EEEESSTTSSHHHHHHHHHHHH...............THEEEEEETTTC CS
         AAA    1 vllyGppGtGKTllakavakel...............gvefleisgsel 34  
                  ++ +Gp G GKT + + + + +               +v++++++ +++
  KOO23572.1 1717 MMTVGPSGGGKTKVLRVLQSAMsrckddkgewisgfeKVRVYKLNPKSI 1765
                  5779***********9998887444444444444333355555555555 PP

  == domain 4  score: -0.8 bits;  conditional E-value: 2.4
                  EEESSTTSSHHHHHHHHHHHHTHEEEEEETTTCSSSSTTHHHHHHHHHHHHHHHTSTS.EEEE CS
         AAA    2 llyGppGtGKTllakavakelgvefleisgsellskyvgesekkirelfkeakekakp.silf 63  
                  ll G  G G+ +l +  ++ +++++++i+ ++       e  ++++ +++ a  + +p + lf
  KOO23572.1 2460 LLLGVGGSGRQSLTRLACHLADFKCFQIEITKNY--RTLEWREDLKTVLRMAGIELRPvVFLF 2520
                  899*************************999988..667788888888888766665644455 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.4   0.1    0.0041       3.2      25      45 ..    1440    1460 ..    1436    1470 .. 0.89
   2 ?    4.9   0.0     0.024        19      20      44 ..    1716    1740 ..    1707    1779 .. 0.81
   3 ?    1.2   0.1      0.33   2.6e+02      13      37 ..    2083    2106 ..    2078    2144 .. 0.73

  Alignments for each domain:
  == domain 1  score: 7.4 bits;  conditional E-value: 0.0041
      AAA_30   25 GpAGtGKttalkalreaweaa 45  
                  GpAGtGKt ++k l++a++++
  KOO23572.1 1440 GPAGTGKTESVKDLAKALAKQ 1460
                  9*************9999875 PP

  == domain 2  score: 4.9 bits;  conditional E-value: 0.024
      AAA_30   20 vavltGpAGtGKttalkalreawea 44  
                   ++ +Gp G GKt +l++l+ a+ +
  KOO23572.1 1716 GMMTVGPSGGGKTKVLRVLQSAMSR 1740
                  46789**************999875 PP

  == domain 3  score: 1.2 bits;  conditional E-value: 0.33
      AAA_30   13 lltsgdrvavltGpAGtGKttalka 37  
                  ll +g++ ++++G  Gt Kt ++++
  KOO23572.1 2083 LL-KGKKHTLVVGSTGTAKTVVVQQ 2106
                  44.455699************9975 PP

>> DUF853  Bacterial protein of unknown function (DUF853)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.2   0.1     0.018        14      25      55 ..    1437    1467 ..    1424    1474 .. 0.87
   2 !    5.2   0.0    0.0082       6.4      14      47 ..    1706    1740 ..    1697    1742 .. 0.84
   3 !    5.1   0.2    0.0093       7.2      20      44 ..    2086    2111 ..    2076    2116 .. 0.79

  Alignments for each domain:
  == domain 1  score: 4.2 bits;  conditional E-value: 0.018
      DUF853   25 liaGatGtGktvtLqvlaeslseaGvpvfla 55  
                    aG +GtGkt +++ la++l+++ v   ++
  KOO23572.1 1437 APAGPAGTGKTESVKDLAKALAKQCVVFNCS 1467
                  55899******************99976665 PP

  == domain 2  score: 5.2 bits;  conditional E-value: 0.0082
      DUF853   14 alalklanrhGlia.GatGtGktvtLqvlaeslse 47  
                  +l   ++ rhG+++ G  G Gkt+ L+vl  ++s+
  KOO23572.1 1706 QLYEMTTVRHGMMTvGPSGGGKTKVLRVLQSAMSR 1740
                  45556778***997699************999986 PP

  == domain 3  score: 5.1 bits;  conditional E-value: 0.0093
      DUF853   20 anrhGliaGatGtGktvtLq.vlaes 44  
                  + +h l+ G+tGt ktv +q +l+ +
  KOO23572.1 2086 GKKHTLVVGSTGTAKTVVVQqKLTRG 2111
                  679*************9986246655 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.4   0.0   0.00093      0.73       4      79 ..    1439    1532 ..    1439    1548 .. 0.66
   2 ?    3.3   0.0      0.14   1.1e+02       4      24 ..    1720    1741 ..    1718    1772 .. 0.76

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00093
      AAA_18    4 tGtpGvGKttlakeLskrl.gf..........gvnlrdvakenglllevdpe.......aldeskrldedkldklldaleenss........aleeg 74  
                  +G++G+GKt+  k L+k l +            ++ +  +++ g                +de++r+d+++l ++ +++  + +           eg
  KOO23572.1 1439 AGPAGTGKTESVKDLAKALaKQcvvfncsdglDYKAMGKFFK-G-------LstagawaCFDEFNRIDIEVLSVVAQQMLTIVNaciqekewFDFEG 1527
                  69*************999853368556666553333333333.2.......2333333368**********99999999888776555555544445 PP

      AAA_18   75 knlvi 79  
                   n+ +
  KOO23572.1 1528 TNVKL 1532
                  55555 PP

  == domain 2  score: 3.3 bits;  conditional E-value: 0.14
      AAA_18    4 tGtpGvGKttlakeLskrl.gf 24  
                   G++G GKt + + L++ +  +
  KOO23572.1 1720 VGPSGGGKTKVLRVLQSAMsRC 1741
                  69*************9987333 PP

>> RNA_helicase  RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.3   0.0    0.0019       1.5       5      83 ..    1440    1519 ..    1438    1541 .. 0.72
   2 ?    3.1   0.0      0.15   1.2e+02       3      34 ..    1719    1749 ..    1717    1770 .. 0.77

  Alignments for each domain:
  == domain 1  score: 9.3 bits;  conditional E-value: 0.0019
  RNA_helicase    5 GpsgeGKStlakeLakallkklklkkkdsvysrnpeddfwdgYt.gqevvvidDfgqvkdeenps.dlaelirlvsstpyp 83  
                    Gp+g+GK+  +k+Lakal+k+    + ++    ++  +f++g +   +  ++d+f+++  e   s   ++++ +v+ +  +
    KOO23572.1 1440 GPAGTGKTESVKDLAKALAKQCVVFNCSDGLDYKAMGKFFKGLStAGAWACFDEFNRIDIE-VLSvVAQQMLTIVNACIQE 1519
                    9******************999665555565667888888888866667777777777644.4454667777777666555 PP

  == domain 2  score: 3.1 bits;  conditional E-value: 0.15
  RNA_helicase    3 lyGpsgeGKStlakeLakallkklklkkkdsv 34  
                     +Gpsg GK+ + + L +a++ + k++k +++
    KOO23572.1 1719 TVGPSGGGKTKVLRVLQSAMS-RCKDDKGEWI 1749
                    68*************999888.4445554554 PP

>> HrpB2  Bacterial type III secretion protein (HrpB2)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.8   0.7     0.049        38      12      63 ..     676     727 ..     670     747 .. 0.77
   2 ?   -2.0   0.0       6.3   4.9e+03      52      88 ..    1190    1226 ..    1177    1235 .. 0.88
   3 ?    5.0   0.3     0.041        32      34      80 ..    2955    3001 ..    2941    3008 .. 0.84

  Alignments for each domain:
  == domain 1  score: 4.8 bits;  conditional E-value: 0.049
       HrpB2  12 lselverFkalmeqakpappsleqsqedsalsklvakqdeelrkvlekvdal 63 
                  +++  +F+ ++ q ++ p+  e+  e s     v++  eel++ ++k+ + 
  KOO23572.1 676 SADVMAKFEEMFGQLQEQPKDIEKLTEISEFIATVQTASEELQADIDKMTEH 727
                 468999******************9999999999999988888777776553 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 6.3
       HrpB2   52 elrkvlekvdalaanakemslneiaaasikvsaevaa 88  
                  +lrk  e v a+  + k+  + ++++ + +v   v++
  KOO23572.1 1190 HLRKCFEAVFAVTMKGKDCAMTDMISPEKEVVPFVTT 1226
                  689999********************99998776665 PP

  == domain 3  score: 5.0 bits;  conditional E-value: 0.041
       HrpB2   34 eqsqedsalsklvakqdeelrkvlekvdalaanakemslneiaaasi 80  
                  +  ++ +a++k va+ +++l++++ek++ l+a+  + +++ ++a+++
  KOO23572.1 2955 AAEAKLDAVTKRVAALEAALKAAVEKMASLEAEVAKCTVQLVNADKL 3001
                  44467899****************************99999888765 PP

>> AAA_24  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.1   0.4      0.35   2.7e+02      62     175 ..     645     761 ..     594     785 .. 0.64
   2 ?    6.3   0.0    0.0093       7.3       8      43 ..    1439    1478 ..    1436    1519 .. 0.88
   3 ?   -2.7   0.1       5.3   4.1e+03       6      21 ..    1718    1733 ..    1717    1738 .. 0.81

  Alignments for each domain:
  == domain 1  score: 1.1 bits;  conditional E-value: 0.35
      AAA_24  62 eladyktlviDtideleelclaevirqnekaeskedkgdgkGygelaeefrrllkklqelrk..nvifiahektrkdedpege..akytrlepklgkkt 156
                 + +++k  ++D  d ++el l+ +++++++++    +++   +g+l+e+ ++ ++kl+e  +    + +a e+ + d d+ +e       l+ + ++ +
  KOO23572.1 645 NTETLKATILDKFDRTCELLLQLICERARAMSADVMAKFEEMFGQLQEQPKD-IEKLTEISEfiATVQTASEELQADIDKMTEhyEVLEELQFETPQED 742
                 66788999**********************8888555555556666655544.3334444443444445555555555444443444455566666666 PP

      AAA_24 157 anelkeevDlvlranlkre 175
                 + +  e ++  lr++lk+e
  KOO23572.1 743 FTARWETFHWPLRLKLKQE 761
                 6666666666666666654 PP

  == domain 2  score: 6.3 bits;  conditional E-value: 0.0093
      AAA_24    8 yGpsgiGKTtlakel....gpkplfidtekGlksldadkf 43  
                   Gp+g+GKT ++k l     ++ +++++ +Gl+     kf
  KOO23572.1 1439 AGPAGTGKTESVKDLakalAKQCVVFNCSDGLDYKAMGKF 1478
                  59*************99999***********998887776 PP

  == domain 3  score: -2.7 bits;  conditional E-value: 5.3
      AAA_24    6 liyGpsgiGKTtlake 21  
                  + +Gpsg GKT +++ 
  KOO23572.1 1718 MTVGPSGGGKTKVLRV 1733
                  678********98875 PP

>> DUF3856  Domain of Unknown Function (DUF3856)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.2       9.4   7.3e+03      72     118 ..     761     804 ..     758     838 .. 0.49
   2 ?    6.5   0.8     0.011       8.3      15      80 ..    2743    2808 ..    2738    2811 .. 0.92
   3 ?    2.7   0.0      0.15   1.2e+02       7      40 ..    3119    3152 ..    3116    3170 .. 0.90

  Alignments for each domain:
  == domain 1  score: -3.1 bits;  conditional E-value: 9.4
                 HHHHHHHHHHHHHHHHH--TTSTHHHHHHHHHHHHHHHHHHTT-HHH CS
     DUF3856  72 dealesadkalryfnrrGeleqdeGklWiaavfsravaleelGrkde 118
                 +e+ +  ++  + fn+  e +q++  l +a + +r   +   G++ +
  KOO23572.1 761 EECYKMMEEDRQLFNKEMEQQQQQFDLAVAELAERVSEF---GKHTD 804
                 566666666667777766666666666555555544333...32222 PP

  == domain 2  score: 6.5 bits;  conditional E-value: 0.011
                  HHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHH CS
     DUF3856   15 eaekqleegayeeaaasyrkalevsrtipaeeafdheGfdalchaglsealaklgrydealesadk 80  
                   +e+q++ ++ +e a+ ++   evs + +++ + + +G  a + agl+eal  l    ++l   dk
  KOO23572.1 2743 VGEQQIQIAKDKEDAQVVKAEAEVSSAAANKKSAECAGIKASAEAGLAEALPALDAAVKCLAKLDK 2808
                  699*************************************************99999998887665 PP

  == domain 3  score: 2.7 bits;  conditional E-value: 0.15
                  HHHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHT CS
     DUF3856    7 aeaylalseaekqleegayeeaaasyrkalevsr 40  
                  a+ +l ls+a++q++  + +++a+++ ++le++ 
  KOO23572.1 3119 ANRFLKLSQAKMQIKTVKASDSAKKVVQTLEMAI 3152
                  5679*************************99985 PP

>> FtsK_SpoIIIE  FtsK/SpoIIIE family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.0       3.4   2.7e+03     103     148 ..     655     700 ..     647     708 .. 0.86
   2 ?   -0.0   0.1      0.59   4.6e+02      91     179 ..     701     802 ..     680     808 .. 0.73
   3 ?    1.3   0.0      0.23   1.8e+02      83     127 ..     798     843 ..     792     848 .. 0.85
   4 ?    0.3   0.0      0.48   3.8e+02      37      59 ..    1709    1734 ..    1688    1743 .. 0.75
   5 ?    4.4   0.0     0.026        20      12      57 ..    2060    2105 ..    2052    2108 .. 0.66

  Alignments for each domain:
  == domain 1  score: -2.5 bits;  conditional E-value: 3.4
                   HHHHHHHHHHHHHHHHHHHHHHHTT-SSHHHHHHHHHHHHHTT--- CS
  FtsK_SpoIIIE 103 eralraleeLvkemeeryalfreagvrsiaaydgeiaedpldifgd 148
                   ++  r+ e L++++ er++ ++++ +++ + + g+ +e+p+di+++
    KOO23572.1 655 DKFDRTCELLLQLICERARAMSADVMAKFEEMFGQLQEQPKDIEKL 700
                   566689999**********************999999999998765 PP

  == domain 2  score: -0.0 bits;  conditional E-value: 0.59
                   TTBSS.S-B-SHHHHHHHHHHHHHHHHHHHHHHHHTT-SSHHH..............HHHHHHHHHHTT---B-TT-.................... CS
  FtsK_SpoIIIE  91 phllsvavatdperalraleeLvkemeeryalfreagvrsiaa..............ydgeiaedpldifgdvflvlDnyddlaaene.ritsLsnq 172
                   + +   + ++ +++a++ l++ +++m e y++++e ++++ +                + + +e  +++++d  l+  ++++ ++++   + +L+++
    KOO23572.1 701 TEIS--EFIATVQTASEELQADIDKMTEHYEVLEELQFETPQEdftarwetfhwplrLKLKQEECYKMMEEDRQLFNKEMEQQQQQFDlAVAELAER 795
                   3333..478899999999***************9999998777767777777766654444445555666777777666666666666778888888 PP

                   ...---- CS
  FtsK_SpoIIIE 173 gpsygvh 179
                    +++g h
    KOO23572.1 796 VSEFGKH 802
                   8888877 PP

  == domain 3  score: 1.3 bits;  conditional E-value: 0.23
                   SCGGGTT-TTBSS..S-B-SHHHHHHHHHHHHHHHHHHHHHHHHTT CS
  FtsK_SpoIIIE  83 elsalediphlls.vavatdperalraleeLvkemeeryalfreag 127
                   e+++ +d+ ++ + va+++d+e+al+ +ee  +  ++r+alf+++ 
    KOO23572.1 798 EFGKHTDLGRITKvVAMVKDIEKALKDFEERAATFNKREALFNKDA 843
                   6666677777777788**************************9876 PP

  == domain 4  score: 0.3 bits;  conditional E-value: 0.48
                    GS-....SEEEE--TTSSHHHHHHHH CS
  FtsK_SpoIIIE   37 kma...shllvaGatgsGKStalntL 59  
                    +m+     ++++G +g GK+ +l++L
    KOO23572.1 1709 EMTtvrHGMMTVGPSGGGKTKVLRVL 1734
                    44444344899*************97 PP

  == domain 5  score: 4.4 bits;  conditional E-value: 0.026
                    HT---TTEEEEEEET.TS-EEEEEGGGS-.SEEEE--TTSSHHHHHH CS
  FtsK_SpoIIIE   12 rtessqlpvalgkei.sgnplvldlkkmashllvaGatgsGKStaln 57  
                    + e+++l+v     +     l + lk+   h+lv+G+tg+ K+++++
    KOO23572.1 2060 QAEYPSLIVPTTASVcYTYLLDTLLKGK-KHTLVVGSTGTAKTVVVQ 2105
                    5555555555555553333333334444.5**************997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (4148 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1152  (0.0642534); expected 358.6 (0.02)
Passed bias filter:                      710  (0.0396006); expected 358.6 (0.02)
Passed Vit filter:                        83  (0.00462937); expected 17.9 (0.001)
Passed Fwd filter:                        34  (0.00189637); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              23  [number of targets reported over threshold]
# CPU time: 1.91u 0.35s 00:00:02.25 Elapsed: 00:00:00.56
# Mc/sec: 22332.52
//
Query:       KOO23573.1  [L=153]
Description: hypothetical protein Ctob_009803 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.011   16.3   6.0       0.74   10.4   0.3    2.1  2  Resistin  Resistin
        6.4    7.0   8.0         32    4.8   0.3    4.0  3  He_PIG    Putative Ig domain


Domain annotation for each model (and alignments):
>> Resistin  Resistin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.3   8.3e-05      0.74      34      63 ..      52      81 ..      32      89 .. 0.85
   2 ?    8.9   1.0   0.00024       2.2      38      64 ..     113     139 ..      86     152 .. 0.78

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 8.3e-05
                EEEEEESSEEE--TTSEEEEEEESTT---E CS
    Resistin 34 tsvkskgklasCpagllvtgCaCgsaCGsW 63
                 s  +++ +a+Cp+ l   + + + aC sW
  KOO23573.1 52 RSAMENAFIAACPSWLHLLSTSAAAACPSW 81
                567778899********************* PP

  == domain 2  score: 8.9 bits;  conditional E-value: 0.00024
                 EESSEEE--TTSEEEEEEESTT---EE CS
    Resistin  38 skgklasCpagllvtgCaCgsaCGsWd 64 
                 ++  +a+Cp+ l   + + + aC sW 
  KOO23573.1 113 ENVFIAACPSWLHLLSTSGAAACPSWL 139
                 555689********************4 PP

>> He_PIG  Putative Ig domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.2      0.57   5.1e+03      32      46 ..      12      26 ..      10      29 .. 0.69
   2 ?    3.5   0.1    0.0091        82       5      18 ..      71      84 ..      61      99 .. 0.70
   3 ?    4.8   0.3    0.0036        32       5      18 ..     128     141 ..     118     148 .. 0.64

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 0.57
      He_PIG 32 tvapGsytftVtatd 46
                +v+pG+    Vt  +
  KOO23573.1 12 GVTPGVQEAVVTGGT 26
                677888888887655 PP

  == domain 2  score: 3.5 bits;  conditional E-value: 0.0091
      He_PIG  5 ttpgsngLPsGLtL 18
                +t+ + + Ps+L+L
  KOO23573.1 71 STSAAAACPSWLHL 84
                45555566777777 PP

  == domain 3  score: 4.8 bits;  conditional E-value: 0.0036
      He_PIG   5 ttpgsngLPsGLtL 18 
                 +t+g+ + Ps+L+L
  KOO23573.1 128 STSGAAACPSWLHL 141
                 55566666666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (153 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       245  (0.013665); expected 358.6 (0.02)
Passed bias filter:                      178  (0.00992805); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.42u 0.23s 00:00:00.65 Elapsed: 00:00:00.41
# Mc/sec: 1112.54
//
Query:       KOO23574.1  [L=506]
Description: ubox domain containing protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    9.9e-33  111.2  35.2    1.2e-05   25.2   1.5    7.5  7  Arm              Armadillo/beta-catenin-like repeat
    2.3e-10   40.5   0.0    5.2e-10   39.4   0.0    1.5  1  U-box            U-box domain
    3.8e-08   33.2   0.4       0.17   11.9   0.1    4.7  5  Atx10homo_assoc  Spinocerebellar ataxia type 10 protein domai
      2e-05   24.3   0.0    4.1e-05   23.3   0.0    1.5  1  zf-Nse           Zinc-finger of the MIZ type in Nse subunit
     0.0021   18.2   0.0      0.014   15.6   0.0    2.2  2  zf-NOSIP         Zinc-finger of nitric oxide synthase-interac
  ------ inclusion threshold ------
      0.054   13.5   0.0        0.1   12.7   0.0    1.4  1  zf-RING_UBOX     RING-type zinc-finger
       0.43   10.4  35.3        1.3    8.9   0.7    6.0  6  Succ_CoA_lig     Succinyl-CoA ligase like flavodoxin domain


Domain annotation for each model (and alignments):
>> Arm  Armadillo/beta-catenin-like repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.6   0.0      0.13   3.2e+02      13      22 ..      42      51 ..      39      58 .. 0.83
   2 !   25.2   1.5   4.6e-09   1.2e-05       4      41 .]      73     111 ..      70     111 .. 0.93
   3 !   24.6   0.8   7.2e-09   1.8e-05       1      40 [.     112     152 ..     112     153 .. 0.95
   4 !   18.1   0.5     8e-07    0.0021       2      40 ..     156     195 ..     154     196 .. 0.91
   5 !   18.4   0.3   6.3e-07    0.0016       4      41 .]     201     239 ..     197     239 .. 0.92
   6 !   21.6   0.5   6.3e-08   0.00016       5      41 .]     245     282 ..     241     282 .. 0.94
   7 !   22.8   0.2   2.6e-08   6.8e-05       5      41 .]     288     325 ..     284     325 .. 0.93

  Alignments for each domain:
  == domain 1  score: 1.6 bits;  conditional E-value: 0.13
                HHHHHHHHTT CS
         Arm 13 avppLvrLLs 22
                a+p Lv+LL+
  KOO23574.1 42 AIPSLVQLLK 51
                79*******9 PP

  == domain 2  score: 25.2 bits;  conditional E-value: 4.6e-09
                 HHHHHHHTTHHHHHHHHTT.TSSHHHHHHHHHHHHHHTT CS
         Arm   4 nkdavieaGavppLvrLLs.sedeevqeeAawALsNLaa 41 
                 n  a++eaGa+ pLv+LL+        ++Aa+AL+NLa+
  KOO23574.1  73 NSNAIREAGAIAPLVALLQaGAGSAAATNAAGALWNLAS 111
                 66799********************************96 PP

  == domain 3  score: 24.6 bits;  conditional E-value: 7.2e-09
                 SHHHHHHHHHTTHHHHHHHHTT.TSSHHHHHHHHHHHHHHT CS
         Arm   1 nsenkdavieaGavppLvrLLs.sedeevqeeAawALsNLa 40 
                 +++ + a++eaGa+ pLv+LL+        ++Aa+AL+NLa
  KOO23574.1 112 SNDARNAIREAGAIAPLVALLQaGAGSAAATNAAGALTNLA 152
                 578899**********************************8 PP

  == domain 4  score: 18.1 bits;  conditional E-value: 8e-07
                 HHHHHHHHHTTHHHHHHHHTT.TSSHHHHHHHHHHHHHHT CS
         Arm   2 senkdavieaGavppLvrLLs.sedeevqeeAawALsNLa 40 
                 + nk a++eaGa+ pLv+LL+        ++Aa  L+NLa
  KOO23574.1 156 DTNKNAIREAGAIAPLVALLQaGAGSAAATNAAVMLGNLA 195
                 4499******************999999999999999997 PP

  == domain 5  score: 18.4 bits;  conditional E-value: 6.3e-07
                 HHHHHHHTTHHHHHHHHTT.TSSHHHHHHHHHHHHHHTT CS
         Arm   4 nkdavieaGavppLvrLLs.sedeevqeeAawALsNLaa 41 
                 n  a++eaGa+ pLv+LL+        + A++ L+NLa+
  KOO23574.1 201 NQNAIREAGAIAPLVALLQaGAGSAAATYAVRVLGNLAS 239
                 8889*********************************96 PP

  == domain 6  score: 21.6 bits;  conditional E-value: 6.3e-08
                 HHHHHHTTHHHHHHHHTT.TSSHHHHHHHHHHHHHHTT CS
         Arm   5 kdavieaGavppLvrLLs.sedeevqeeAawALsNLaa 41 
                 k a++eaGa+ pLv+LL+     e  + Aa+AL+NLa+
  KOO23574.1 245 KNAIREAGAIAPLVALLQaGAGSEAATIAAGALANLAS 282
                 6799********************************96 PP

  == domain 7  score: 22.8 bits;  conditional E-value: 2.6e-08
                 HHHHHHTTHHHHHHHHTT.TSSHHHHHHHHHHHHHHTT CS
         Arm   5 kdavieaGavppLvrLLs.sedeevqeeAawALsNLaa 41 
                 k a++eaGa+ pLv+LL+        + Aa AL+NL++
  KOO23574.1 288 KNAIREAGAIAPLVALLQaGAGSAAARYAADALWNLSD 325
                 6799********************************95 PP

>> U-box  U-box domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.4   0.0     2e-13   5.2e-10       2      49 ..     422     469 ..     421     475 .. 0.95

  Alignments for each domain:
  == domain 1  score: 39.4 bits;  conditional E-value: 2e-13
                 SGGGB-TTT-SB-SSEEEETTTEEEEHHHHHHHHTT.SSB-TTT-SB- CS
       U-box   2 PdefldpitlelmkdPvilpsgvvvdrstiekhllsrdktdPftrepl 49 
                 P  f +pit+  mkdPv++++g++++rs+ie+ l+  ++ +P+tr++l
  KOO23574.1 422 PADFTCPITYDKMKDPVVASDGHSYERSAIEEILRGPHPLSPLTRATL 469
                 788******************************************988 PP

>> Atx10homo_assoc  Spinocerebellar ataxia type 10 protein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.5   0.0      0.51   1.3e+03      51      69 ..      61      79 ..      54      91 .. 0.59
   2 ?    3.5   0.0     0.027        70      51      69 ..     146     164 ..     108     172 .. 0.58
   3 !   11.9   0.1   6.6e-05      0.17       9      69 ..     148     207 ..     143     214 .. 0.90
   4 !    9.1   0.0   0.00049       1.2       5      32 ..     230     257 ..     227     265 .. 0.89
   5 ?    4.8   0.0     0.011        28       9      70 ..     277     337 ..     272     352 .. 0.73

  Alignments for each domain:
  == domain 1  score: -0.5 bits;  conditional E-value: 0.51
  Atx10homo_assoc 51 lairnLlegneenqelvae 69
                     lai +L  ++++n + ++e
       KOO23574.1 61 LAIDHLAANSAANSNAIRE 79
                     5555555555555555544 PP

  == domain 2  score: 3.5 bits;  conditional E-value: 0.027
  Atx10homo_assoc  51 lairnLlegneenqelvae 69 
                       a+ nL ++n  n++ ++e
       KOO23574.1 146 GALTNLANSNDTNKNAIRE 164
                      4555666666666665554 PP

  == domain 3  score: 11.9 bits;  conditional E-value: 6.6e-05
  Atx10homo_assoc   9 lgnlvyknkevqdkvreldgleliLsqcniDdnnPfirewailairnLlegneenqelvae 69 
                      l+nl+ +n ++++ +re ++++ +    +  +     ++ a++ + nL ++n  nq+ ++e
       KOO23574.1 148 LTNLANSNDTNKNAIREAGAIAPLVALLQAGAGSAAATNAAVM-LGNLANSNDTNQNAIRE 207
                      899***********************99999999988887776.99************997 PP

  == domain 4  score: 9.1 bits;  conditional E-value: 0.00049
  Atx10homo_assoc   5 lvrllgnlvyknkevqdkvreldgleli 32 
                       vr+lgnl+ +n ++++ +re ++++ +
       KOO23574.1 230 AVRVLGNLASSNDTIKNAIREAGAIAPL 257
                      79*********************99876 PP

  == domain 5  score: 4.8 bits;  conditional E-value: 0.011
  Atx10homo_assoc   9 lgnlvyknkevqdkvreldgleliLsqcniDdnnPfirewailairnLlegneenqelvaeL 70 
                      l+nl+ +n ++++ +re ++++ +    +  +       +a  a+ nL ++ +  q+++a+L
       KOO23574.1 277 LANLASSNDTIKNAIREAGAIAPLVALLQAGAGSAA-ARYAADALWNLSDSLNCCQAILAAL 337
                      89******************9988776666555443.3355556666666655555555555 PP

>> zf-Nse  Zinc-finger of the MIZ type in Nse subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.3   0.0   1.6e-08   4.1e-05      11      44 ..     424     456 ..     422     479 .. 0.88

  Alignments for each domain:
  == domain 1  score: 23.3 bits;  conditional E-value: 1.6e-08
                 XSB-TTTSSB-SSEEEESSS--EEEHHHHHHHCT CS
      zf-Nse  11 slkCPltlqpfeePvtskkCpHvFEreaIlelik 44 
                 +++CP+t  ++++Pv      H++Er+aI+e+++
  KOO23574.1 424 DFTCPITYDKMKDPVVASD-GHSYERSAIEEILR 456
                 789************9987.8**********994 PP

>> zf-NOSIP  Zinc-finger of nitric oxide synthase-interacting protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.0      0.62   1.6e+03      25      53 ..     308     340 ..     304     347 .. 0.62
   2 !   15.6   0.0   5.3e-06     0.014      39      69 ..     424     453 ..     404     457 .. 0.86

  Alignments for each domain:
  == domain 1  score: -0.7 bits;  conditional E-value: 0.62
    zf-NOSIP  25 ygtqsvrlikdav....kdfdccslslqacrdp 53 
                  g+ + r + da+      ++cc   l a  d 
  KOO23574.1 308 AGSAAARYAADALwnlsDSLNCCQAILAALTDT 340
                 555556666666522212469999888887775 PP

  == domain 2  score: 15.6 bits;  conditional E-value: 5.3e-06
    zf-NOSIP  39 dfdccslslqacrdpvltedgylyekeaile 69 
                 df  c ++ +  +dpv++ dg+ ye+ ai e
  KOO23574.1 424 DFT-CPITYDKMKDPVVASDGHSYERSAIEE 453
                 665.6789999*****************965 PP

>> zf-RING_UBOX  RING-type zinc-finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   3.9e-05       0.1       1      26 [.     427     452 ..     427     467 .. 0.85

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 3.9e-05
  zf-RING_UBOX   1 CpIClelftdPlvl.pCGHtFCreClw 26 
                   CpI ++ ++dP v+ + GH++ r+ ++
    KOO23574.1 427 CPITYDKMKDP-VVaSDGHSYERSAIE 452
                   ***********.65489*******994 PP

>> Succ_CoA_lig  Succinyl-CoA ligase like flavodoxin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.2   0.5     0.056   1.4e+02      87     123 ..      50      83 ..      28      85 .. 0.79
   2 ?    8.9   0.7   0.00049       1.3      73     123 ..     117     168 ..     106     171 .. 0.83
   3 ?    7.3   0.4    0.0015       3.8      84     123 ..     172     211 ..     169     213 .. 0.93
   4 ?    7.6   0.4    0.0012       3.1      84     123 ..     215     254 ..     212     256 .. 0.92
   5 ?    7.6   0.6    0.0012       3.2      84     123 ..     258     297 ..     255     299 .. 0.92
   6 ?   -1.1   0.8       0.6   1.5e+03      85     115 ..     363     393 ..     309     396 .. 0.72

  Alignments for each domain:
  == domain 1  score: 2.2 bits;  conditional E-value: 0.056
  Succ_CoA_lig  87 lksGrseagaraaashtgalagsdavvdaafrqaGvl 123
                   lk G   +ga aaa     la+++a+ + a+r+aG++
    KOO23574.1  50 LKGG---HGASAAALAIDHLAANSAANSNAIREAGAI 83 
                   5555...566666677777****************98 PP

  == domain 2  score: 8.9 bits;  conditional E-value: 0.00049
  Succ_CoA_lig  73 saarraarkkpvvv.lksGrseagaraaashtgalagsdavvdaafrqaGvl 123
                   +a+r+a +  p+v+ l++G  +a+a  aa    +la+s+++ + a+r+aG++
    KOO23574.1 117 NAIREAGAIAPLVAlLQAGAGSAAATNAAGALTNLANSNDTNKNAIREAGAI 168
                   567777777676652799999999999999999*****************98 PP

  == domain 3  score: 7.3 bits;  conditional E-value: 0.0015
  Succ_CoA_lig  84 vvvlksGrseagaraaashtgalagsdavvdaafrqaGvl 123
                   v +l++G  +a+a  aa   g+la+s+++ + a+r+aG++
    KOO23574.1 172 VALLQAGAGSAAATNAAVMLGNLANSNDTNQNAIREAGAI 211
                   56789*********************************98 PP

  == domain 4  score: 7.6 bits;  conditional E-value: 0.0012
  Succ_CoA_lig  84 vvvlksGrseagaraaashtgalagsdavvdaafrqaGvl 123
                   v +l++G  +a+a  a    g+la+s+++++ a+r+aG++
    KOO23574.1 215 VALLQAGAGSAAATYAVRVLGNLASSNDTIKNAIREAGAI 254
                   567899**9*****************************98 PP

  == domain 5  score: 7.6 bits;  conditional E-value: 0.0012
  Succ_CoA_lig  84 vvvlksGrseagaraaashtgalagsdavvdaafrqaGvl 123
                   v +l++G  +++a  aa   ++la+s+++++ a+r+aG++
    KOO23574.1 258 VALLQAGAGSEAATIAAGALANLASSNDTIKNAIREAGAI 297
                   567899**999***************************98 PP

  == domain 6  score: -1.1 bits;  conditional E-value: 0.6
  Succ_CoA_lig  85 vvlksGrseagaraaashtgalagsdavvda 115
                   +   +G+ +a+ +aa +   a+ +sd++v+a
    KOO23574.1 363 LRTEAGEDAAALEAALAMATAMGASDEAVTA 393
                   4445666666666666666677777776665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (506 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       654  (0.0364772); expected 358.6 (0.02)
Passed bias filter:                      269  (0.0150036); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                        14  (0.000780858); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.63u 0.26s 00:00:00.89 Elapsed: 00:00:00.44
# Mc/sec: 3438.52
//
Query:       KOO23575.1  [L=195]
Description: hypothetical protein Ctob_003657 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
  ------ inclusion threshold ------
       0.12   12.7   1.6       0.18   12.1   1.6    1.3  1  DUF2935       Domain of unknown function (DUF2935)
       0.13   11.1   1.5       0.16   10.8   1.5    1.0  1  YjbH          Exopolysaccharide biosynthesis protein YbjH
        0.2   12.0   9.5       0.25   11.7   9.5    1.2  1  DUF737        Protein of unknown function (DUF737)
       0.44    8.0  15.8       0.56    7.6  15.8    1.0  1  DUF3584       Protein of unknown function (DUF3584)
       0.64    9.9  10.8       0.78    9.6  10.8    1.1  1  eIF3_subunit  Translation initiation factor eIF3 subunit
        1.8    8.1  10.5        2.4    7.7  10.5    1.2  1  DDRGK         DDRGK domain
        5.4    7.1  12.0         12    6.0  12.0    1.6  1  PRIMA1        Proline-rich membrane anchor 1
        5.4    5.8   4.8        6.8    5.5   4.8    1.1  1  5_nucleotid   5' nucleotidase family


Domain annotation for each model (and alignments):
>> DUF2935  Domain of unknown function (DUF2935)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   1.6     8e-05      0.18      27     100 ..      60     150 ..      52     155 .. 0.75

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 8e-05
     DUF2935  27 pkekdlikeakefkkeFekllaeavelseglv.................rasseleeavakLneealkltreliqFkkellekvlscklfs 100
                  +e +l+++a+++++e  +  a  + + e                     ++ e+e a+a+Lne+  +++++  +F ++l+ ++++ ++++
  KOO23575.1  60 AEEWELMRKAEALEREVAEHKAAKEAAREARRraderhaaeaalqrwqsELRAETEVAIARLNEQRAAQLTKCAEFEAKLQANIEAMQAMQ 150
                 555666666666666555555555444444446666777777777777799*********************************9998765 PP

>> YjbH  Exopolysaccharide biosynthesis protein YbjH
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   1.5     7e-05      0.16     347     446 ..      55     154 ..      47     176 .. 0.91

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 7e-05
        YjbH 347 etevrredleqleneksaaaelaaaselaeaaeeapdpaakeqllekeperfslslspkleqslgdpegfllyqlgveasasyeltdglvlsgslrvnl 445
                 e+e+++e++e +++++  + e+a+++ ++eaa+ea+++a +++ +e+  +r++ +l+ ++e ++   +++  +ql   a+++ +l+ ++++  +++v++
  KOO23575.1  55 EAELEAEEWELMRKAEALEREVAEHKAAKEAAREARRRADERHAAEAALQRWQSELRAETEVAIARLNEQRAAQLTKCAEFEAKLQANIEAMQAMQVQV 153
                 678999********************9**********************************************************99999999888877 PP

        YjbH 446 l 446
                  
  KOO23575.1 154 R 154
                 5 PP

>> DUF737  Protein of unknown function (DUF737)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   9.5   0.00011      0.25      34     146 ..      25     146 ..       2     188 .. 0.41

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.00011
      DUF737  34 qakepl.paspspeelappqess.........skaaestsaps....sasssssqakveeeelrkkikeelqkrleeeqakaea.........vqeela 109
                 +ak+p+ p++p+      p++++         + + e++ + +      +++  + +v+e +  k+++ e ++r +e +a + a          + e+a
  KOO23575.1  25 SAKSPAfPPPPP------PPDAAapppnleaePVPDEAELEAEewelMRKAEALEREVAEHKAAKEAAREARRRADERHAAEAAlqrwqselrAETEVA 117
                 111111111111......222221111112222222222222233322233444445555555555555555555555555444333222211122332 PP

      DUF737 110 kllerEreaaqeelteailrerlstedErlkaqllel 146
                          a+ + ++a +  +    + +l+a++  +
  KOO23575.1 118 I--------ARLNEQRAAQLTKCAEFEAKLQANIEAM 146
                 2........2222233333333333334444443322 PP

>> DUF3584  Protein of unknown function (DUF3584)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.6  15.8   0.00025      0.56     622     740 ..      69     186 ..      50     193 .. 0.47

  Alignments for each domain:
  == domain 1  score: 7.6 bits;  conditional E-value: 0.00025
     DUF3584 622 qkqaeeelkqlnaeleeakravaeaatalknardtlerlqnekesekdklekaiaerkqqaeeqlqkldaqlkqleeqqkaaleelkedlseerlekka 720
                 ++++e e+++ +++++ea r++ ++a +   a+  l+r+q+e ++e +   + ++e+++++ ++  +++a+l+++ e  +a++ ++++++    +++ a
  KOO23575.1  69 AEALEREVAE-HKAAKEAAREARRRADERHAAEAALQRWQSELRAETEVAIARLNEQRAAQLTKCAEFEAKLQANIEAMQAMQVQVRRRAAAIDTAFDA 166
                 2223333222.3333344444444444445555555555555555544444444445555555555555555555555555555555555555555555 PP

     DUF3584 721 kwqevvgeldeqlaelkkai 740
                  ++ ++g+  +++a + +++
  KOO23575.1 167 TVARLSGSYTDAVACMAEQV 186
                 55555555555555555555 PP

>> eIF3_subunit  Translation initiation factor eIF3 subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6  10.8   0.00035      0.78      23     132 ..      46     157 ..      24     175 .. 0.65

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 0.00035
  eIF3_subunit  23 kWddEd...ededvkdswdaeeeeee.ekekakkaaeakakaakakkkkskkqkiaekeerrkaeeeeaeeeeeleeedeaarkerlrkaeeesDlk 115
                   + + E    e e  +++w+   + e+ e+e a+++a+++  aa  +++ + +   ae   +r + e +ae e +++ ++e+   ++ + ae e+ l+
    KOO23575.1  46 NLEAEPvpdEAELEAEEWELMRKAEAlEREVAEHKAAKE--AAREARRRADERHAAEAALQRWQSELRAETEVAIARLNEQRAAQLTKCAEFEAKLQ 140
                   555555532222335888888888886666664444322..34444444445555555567788888899999999999999999999999999999 PP

  eIF3_subunit 116 naadlFGgvattketdl 132
                   +  +++ +++++   ++
    KOO23575.1 141 ANIEAMQAMQVQVRRRA 157
                   99999987754444444 PP

>> DDRGK  DDRGK domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.7  10.5    0.0011       2.4      32     106 ..      61     134 ..      49     159 .. 0.71

  Alignments for each domain:
  == domain 1  score: 7.7 bits;  conditional E-value: 0.0011
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHHHHHHH CS
       DDRGK  32 kkleekreeerkekeekeeekekkkeeeerkkeeekerkeqeeyeklksefvveeegtekesaeeeeklleefin 106
                 +  e +r++e  e+e +e +k++k++++e+++++++++ +++++++++se+  e e  ++  +e+++  l++  +
  KOO23575.1  61 EEWELMRKAEALEREVAE-HKAAKEAAREARRRADERHAAEAALQRWQSELRAETEVAIARLNEQRAAQLTKCAE 134
                 444555655555555554.45555566667777888888999*************99999988887765555555 PP

>> PRIMA1  Proline-rich membrane anchor 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.0  12.0    0.0051        12      23      57 ..      25      63 ..       5      67 .. 0.80

  Alignments for each domain:
  == domain 1  score: 6.0 bits;  conditional E-value: 0.0051
      PRIMA1 23 crrypplppppppp....ppprllsltaaestvsplepw 57
                  + p +ppppppp    ppp+l + ++++ +  ++e w
  KOO23575.1 25 SAKSPAFPPPPPPPdaaaPPPNLEAEPVPDEAELEAEEW 63
                4456777777777666669************99999999 PP

>> 5_nucleotid  5' nucleotidase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.5   4.8     0.003       6.8     331     438 ..      70     183 ..      56     189 .. 0.67

  Alignments for each domain:
  == domain 1  score: 5.5 bits;  conditional E-value: 0.003
                  TTHHHHHHHHHHTHHH.HHHHHHHHHHHHHHHHHHHHHHH....T.T..THHHHHHHHHHHHHHHHHHHHHHHHHHCCS-TTT--SSEETTEEBHHHH CS
  5_nucleotid 331 pELeeElevleekkek.eeleelekleelledelkklkss....eee..skekleeleedleelkkeirelreelkelfnkqfGslfrtgseksrFar 421
                  + Le+E++ ++ +ke  +e ++  +++++ e +l++ +s+    + e    +  e+  ++l++  +  ++l+ +++++   q+    r+   ++ F  
   KOO23575.1  70 EALEREVAEHKAAKEAaREARRRADERHAAEAALQRWQSElraeT-EvaIARLNEQRAAQLTKCAEFEAKLQANIEAMQAMQVQVRRRAAAIDTAFDA 166
                  567888888877777667777777777777777777777754431.1333333333444556666666666666666666666666788899999999 PP

                  HHHHH-SEEESSHHHHH CS
  5_nucleotid 422 qveryAdlYtssvsnLl 438
                   v r +  Yt  v ++ 
   KOO23575.1 167 TVARLSGSYTDAVACMA 183
                  99999999999998876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (195 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2148  (0.119806); expected 358.6 (0.02)
Passed bias filter:                      625  (0.0348597); expected 358.6 (0.02)
Passed Vit filter:                        76  (0.00423894); expected 17.9 (0.001)
Passed Fwd filter:                        13  (0.000725082); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.52u 0.31s 00:00:00.83 Elapsed: 00:00:00.45
# Mc/sec: 1309.13
//
Query:       KOO23576.1  [L=974]
Description: cytoskeletal protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.4e-07   31.8   0.0      0.013   15.9   0.0    2.4  2  BRCT_2    BRCT domain, a BRCA1 C-terminus domain
    7.1e-05   23.1   0.0       0.17   12.3   0.0    2.4  2  BRCT      BRCA1 C Terminus (BRCT) domain
     0.0036   17.6   0.0      0.006   16.9   0.0    1.4  1  FHA       FHA domain


Domain annotation for each model (and alignments):
>> BRCT_2  BRCT domain, a BRCA1 C-terminus domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.4   0.0   1.3e-05     0.077      18      84 ..     777     852 ..     772     853 .. 0.84
   2 !   15.9   0.0   2.2e-06     0.013       6      78 ..     886     965 ..     881     969 .. 0.73

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 1.3e-05
      BRCT_2  18 s.psreklkklIeknGGevveti...tsavyiviaesneee.....laekrkrrvvspkyIkdCikkgkllpleny 84 
                 + p +e +k+ I    G+vv++      ++++v+a+  + +       + +++  v+ +++++C ++g  ++  +y
  KOO23576.1 777 EgPRKEAMKSTILGLRGRVVKDDdevATCTHVVVAKPVKRTtklliGVSVPSAVLVDERWVRACHSAGHFVDGAPY 852
                 4489999************88885545567777777777669***99999*********************99888 PP

  == domain 2  score: 15.9 bits;  conditional E-value: 2.2e-06
      BRCT_2   6 eglrFYindaepspsreklkklIeknGGevveti...tsa.vyiviaesneee....laekrkrrvvspkyIkdCikkgkl 78 
                  gl+FY+ ++e +p  e+lk + e+ GG+v  +    ++a  ++v++++ e++    la+ ++ ++++++ + d + +++l
  KOO23576.1 886 AGLHFYV-TDEVKPRPEQLKLILEQAGGTVLTKApsaKDAhETLVVTTEAEKKswqrLAKLPRVKALRVDHVLDGVLQQQL 965
                 689****.667779****************555533323333333333333336999999999999999999999988876 PP

>> BRCT  BRCA1 C Terminus (BRCT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.3   0.0   2.8e-05      0.17      11      78 ..     770     840 ..     768     841 .. 0.74
   2 !    8.5   0.0   0.00044       2.6       4      46 ..     883     925 ..     880     952 .. 0.70

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 2.8e-05
                 EEEEESTSSHHHHHH.HHHHHHTTCEE..ESSCSTTSSEEEESSSHSHHHHHHHHHH.TTSEEEETHHHHHH CS
        BRCT  11 fvitgvldnftrdel.eelikehGGkv..ttevskktthlvvgepesrslkylealk.lnipivheewlldc 78 
                 +++ +++d+ +r+e+ +++i  + G+v   ++   ++th+vv +p +r++k+l   +     +v+e w+ +c
  KOO23576.1 770 VAF-SGFDEGPRKEAmKSTILGLRGRVvkDDDEVATCTHVVVAKPVKRTTKLLIGVSvPSAVLVDERWVRAC 840
                 677.899999999999***********554444568999999999899999876543144445566666665 PP

  == domain 2  score: 8.5 bits;  conditional E-value: 0.00044
                 TTTTTEEEEEEESTSSHHHHHHHHHHHHTTCEE.ESSCSTTSSE CS
        BRCT   4 llfhgckfvitgvldnftrdeleelikehGGkv.ttevskktth 46 
                  ++ g++f++ + +     ++l+ +++  GG+v t++ s k+ h
  KOO23576.1 883 GCLAGLHFYV-TDEVKPRPEQLKLILEQAGGTVlTKAPSAKDAH 925
                 5899******.66666666677***********85555555544 PP

>> FHA  FHA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   0.0     1e-06     0.006       2      69 .]      46     115 ..      45     115 .. 0.80

  Alignments for each domain:
  == domain 1  score: 16.9 bits;  conditional E-value: 1e-06
                 EEESSTTSSEETTSTTSTTTEEEEEEETTCEEEEEEE..ESSSSSEEETTEEESTTSEEEE-TTEEEEET CS
         FHA   2 tiGRssdcdivlddpsiSrkHalikfdkgsgkvyleD..lgSknGtfvNgqrigkgepveLksgdvielG 69 
                 ++GR ++cd+ +d+ps+  +H+ + f+   g ++++   ++  n t +    +++g++  ++s  v+++G
  KOO23576.1  46 SVGRQASCDVPIDHPSVGAHHLDVAFTMLGGVLCIKLvpVDHANPTKIKSMVLPPGRRFTVRSQQVFKVG 115
                 79*********************98888755555554337789999998888888888888888777765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (974 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       788  (0.0439511); expected 358.6 (0.02)
Passed bias filter:                      335  (0.0186848); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.74u 0.33s 00:00:01.07 Elapsed: 00:00:00.45
# Mc/sec: 6525.37
//
Query:       KOO23577.1  [L=777]
Description: hypothetical protein Ctob_003655 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    8.3e-05   22.0   0.0    0.00034   20.0   0.0    1.9  1  ART             NAD:arginine ADP-ribosyltransferase
    0.00015   21.7   7.2    0.00015   21.7   7.2    2.2  2  Cep57_CLD_2     Centrosome localisation domain of PPC89
      0.009   16.0   4.1      0.018   15.1   4.1    1.4  1  CENP-F_leu_zip  Leucine-rich repeats of kinetochore protein C
  ------ inclusion threshold ------
      0.019   15.3   0.7      0.019   15.3   0.7    2.0  1  Tup_N           Tup N-terminal
      0.025   14.7   3.2      0.043   13.9   3.2    1.3  1  UPF0242         Uncharacterised protein family (UPF0242) N-te
       0.11   12.2   5.0       0.24   11.1   5.0    1.5  1  DUF4201         Domain of unknown function (DUF4201)
       0.14   11.5   0.0       0.26   10.6   0.0    1.3  1  ADPrib_exo_Tox  ADP-ribosyltransferase exoenzyme
       0.16   11.7   3.1       0.37   10.5   0.4    2.2  2  SHE3            SWI5-dependent HO expression protein 3
        0.2   11.7   3.3       0.78    9.8   0.1    2.5  2  Bap31_Bap29_C   Bap31/Bap29 cytoplasmic coiled-coil domain
       0.21   11.0   0.0       0.41   10.0   0.0    1.4  1  TraE            TraE protein
       0.23   10.6   6.1       0.38    9.9   6.1    1.3  1  HAP1_N          HAP1 N-terminal conserved region
       0.25   11.4   4.7       0.51   10.4   4.7    1.4  1  ADIP            Afadin- and alpha -actinin-Binding
       0.35   11.4   6.2       0.95   10.0   6.2    1.7  1  APG6_N          Apg6 coiled-coil region
       0.35   11.3   4.0       0.11   12.9   0.9    1.7  2  Fez1            Fez1
        3.4    7.8  13.0       0.86    9.8   9.4    1.7  2  ATG16           Autophagy protein 16 (ATG16)
        7.6    6.4   9.3        1.1    9.1   4.9    1.7  2  CEP63           Centrosomal protein of 63 kDa


Domain annotation for each model (and alignments):
>> ART  NAD:arginine ADP-ribosyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.0   0.0     3e-07   0.00034      62     215 ..     436     621 ..     431     628 .. 0.75

  Alignments for each domain:
  == domain 1  score: 20.0 bits;  conditional E-value: 3e-07
         ART  62 kdehgiAllaYtssselyrelneavr.....eaGr...sreeylsnfdfkalhfyLtraLqlLrkdsqrcsqvyRgvk..............glrfsra 138
                  d + iA  +Yt+   ++ + n+ +r     e+     ++    + +++ +   +L +a  +L++  + ++ vyRgv               g++ s  
  KOO23577.1 436 LDAEVIAARLYTGP--MHAKYNAVLRgriegEGTGahdAFMALCRGNPYTTSLHALRSAVLKLSQ-IGTAHTVYRGVSsssvphwlwkrpaaGTKESEE 531
                 5789999999*999..999999999844433223311134445689*******************.************999999999988884444433 PP

         ART 139 kkgksvRfgqFtssslkkkvae...........efgqdtllsikt...clgvpIkefskfpsedevLIppfevFkvtnlskeegkskiqLr 215
                   +  + +g F s+ ++ ++a             + +  +l+++t   + g+++  +s++p+e+e+   p + ++  +++ ++  + ++L+
  KOO23577.1 532 ASRGGIELG-FLSATTDAEQAMkyaseavdaadGSAKRMVLELHTgltSRGAELSWLSQYPHERETCFVPGTAHELLGSRVDGTCVIVELQ 621
                 333344443.77777777666666666666655777889999986222679***************9999999999998888888877776 PP

>> Cep57_CLD_2  Centrosome localisation domain of PPC89
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.7   7.2   1.4e-07   0.00015      10      60 ..      64     114 ..      54     132 .. 0.89
   2 ?   -2.9   0.1       6.9   7.8e+03       4      17 ..     627     640 ..     625     641 .. 0.83

  Alignments for each domain:
  == domain 1  score: 21.7 bits;  conditional E-value: 1.4e-07
  Cep57_CLD_2  10 nrLdsltrklqvheeelkrLnkERdsalrqLgvAyeelneLkaevealrkE 60 
                  n+L+   +++++ e + +rL  ERd ++r Lg   +el++L+ae + l ++
   KOO23577.1  64 NDLTACGEQIEHLEKHAERLKLERDDFARHLGTRTLELEKLQAEFDQLSEK 114
                  8999999*****************************************998 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 6.9
  Cep57_CLD_2   4 evktLqnrLdsltr 17 
                  e +tLq+ L++l r
   KOO23577.1 627 ETETLQEILTRLKR 640
                  66899999999987 PP

>> CENP-F_leu_zip  Leucine-rich repeats of kinetochore protein Cenp-F/LEK1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   4.1   1.6e-05     0.018      22      87 ..      69     134 ..      53     140 .. 0.88

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 1.6e-05
  CENP-F_leu_zip  22 LkdkvenLerelemseenqekvileaEtskaevetlkeeieelaeelreleldLvalrsekeeLek 87 
                       +++e Le+  e ++ ++++  +   t   e+e+l++e ++l+e+   l+l+++ +r e+e+ ++
      KOO23577.1  69 CGEQIEHLEKHAERLKLERDDFARHLGTRTLELEKLQAEFDQLSEKHAALRLEFTRVRTENETYAR 134
                     5579********************************************************998665 PP

>> Tup_N  Tup N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.3   0.7   1.7e-05     0.019      13      61 ..      73     121 ..      65     130 .. 0.92

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 1.7e-05
       Tup_N  13 fdalsqeasslkaqkdeyelkiqsqiqElqqirqtlyeLeeahrkikqq 61 
                 ++ l+++a+ lk ++d++ +++ + + El++++ ++ +L e+h +++ +
  KOO23577.1  73 IEHLEKHAERLKLERDDFARHLGTRTLELEKLQAEFDQLSEKHAALRLE 121
                 68999**************************************999865 PP

>> UPF0242  Uncharacterised protein family (UPF0242) N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   3.2   3.9e-05     0.043      63     141 ..      52     130 ..      36     138 .. 0.86

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 3.9e-05
     UPF0242  63 eklekskleekeaklteldeglktkeealeelqeeeeeLkeeldakeeelerlkeenqqLqekleaiaedfeelklele 141
                 ++l +++l+++ + lt+  e+++  e++ e l+ e ++ +++l  ++ ele+l+ e  qL+ek  a   +f +++ e e
  KOO23577.1  52 LRLRSEELNARDNDLTACGEQIEHLEKHAERLKLERDDFARHLGTRTLELEKLQAEFDQLSEKHAALRLEFTRVRTENE 130
                 344788899999999999999999999999999999999999**********************99999**99999877 PP

>> DUF4201  Domain of unknown function (DUF4201)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   5.0   0.00022      0.24      85     167 ..      44     128 ..      40     138 .. 0.87

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00022
     DUF4201  85 klhmleselselkkelkekeerlaklrkelykvklerdklrkqneklkqqgg..llrvPaLlkDYdktkekveekrksvkkLrrk 167
                 k+ +l+++l+ + +el+ ++++l+++ +++++++++ ++l+ +++++ +++g   l+ ++L  ++d+  ek + +r +    r++
  KOO23577.1  44 KTEELSAMLRLRSEELNARDNDLTACGEQIEHLEKHAERLKLERDDFARHLGtrTLELEKLQAEFDQLSEKHAALRLEFTRVRTE 128
                 7889999****************************************999883358999************99999887777765 PP

>> ADPrib_exo_Tox  ADP-ribosyltransferase exoenzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0   0.00023      0.26      58     158 ..     486     595 ..     432     603 .. 0.75

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00023
                     HHHHHHHCCT-.B-SS-EEEEEEE-GGGG-HHHHTT....-HHHHHHHHHHHTT-EEEESS-EEEESSSS...........SCCCTTTSEEEEEE CS
  ADPrib_exo_Tox  58 iknldsaleks.ripeniivYRrvdeaelgleldsk....neekvsefeakvkgkvfkergyvSTslvkd..........taasfggreillelt 137
                      + l sa+ k  +i +  +vYR+v+ ++       +    ++  +   e+   ++   e g++S +   +           aa  + +++ lel+
      KOO23577.1 486 LHALRSAVLKLsQIGTAHTVYRGVSSSSV------PhwlwKRPAAGTKESEEASRGGIELGFLSATTDAEqamkyaseavDAADGSAKRMVLELH 574
                     667888887777***********966655......133456888888888899999********99988888999888754444444589***** PP

                     E-TTSBEEE-CCCSSSGCG-E CS
  ADPrib_exo_Tox 138 vpkgsegayisplslypgeaE 158
                     +  +s ga +s ls+yp e E
      KOO23577.1 575 TGLTSRGAELSWLSQYPHERE 595
                     *******************99 PP

>> SHE3  SWI5-dependent HO expression protein 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.4   0.00033      0.37      51     125 ..      43     116 ..      24     130 .. 0.87
   2 ?    1.1   0.1      0.24   2.7e+02      50     125 ..     624     699 ..     617     704 .. 0.82

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00033
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH CS
        SHE3  51 khENdnLsslLkRKerrlkdlekelselkesveelklekkqlkkrlenssaseteleeelerlkvqYdalvdsqk 125
                 ++  + Ls++L+ +   l   +++l+   e++e+l+++ + lk + ++   +  + + ele+l++++d l + + 
  KOO23577.1  43 RK-TEELSAMLRLRSEELNARDNDLTACGEQIEHLEKHAERLKLERDDFARHLGTRTLELEKLQAEFDQLSEKHA 116
                 44.578999999999999999999999999999999999999999999999999999999999999999977765 PP

  == domain 2  score: 1.1 bits;  conditional E-value: 0.24
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH CS
        SHE3  50 lkhENdnLsslLkRKerrlkdlekelselkesveelklekkqlkkrlenssaseteleeelerlkvqYdalvdsqk 125
                 ++ E + L+ +L R +r  + l + + +  +s e  ++    l+  +++ +  e++  ++ e+  ++  a vd+q+
  KOO23577.1 624 VQGETETLQEILTRLKRSHLLLIDTYLDDMKSCEVPEKALGRLRALANTHKRYEQSYYNNPEKFGASTSAAVDAQR 699
                 5668899999999988877777777777778889999999999999999999999999999999999999999887 PP

>> Bap31_Bap29_C  Bap31/Bap29 cytoplasmic coiled-coil domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.7   0.5      0.24   2.7e+02       8      29 ..      56      78 ..      46      88 .. 0.84
   2 ?    9.8   0.1    0.0007      0.78      25      41 ..     102     118 ..     101     130 .. 0.85

  Alignments for each domain:
  == domain 1  score: 1.7 bits;  conditional E-value: 0.24
  Bap31_Bap29_C  8 k.eLkkkkkDlealKkQaeglak 29
                   + eL++ ++Dl a  +Q+e+l k
     KOO23577.1 56 SeELNARDNDLTACGEQIEHLEK 78
                   34999**************9987 PP

  == domain 2  score: 9.8 bits;  conditional E-value: 0.0007
  Bap31_Bap29_C  25 eglakEYDrLadehskl 41 
                    e l++E+D L+++h++l
     KOO23577.1 102 EKLQAEFDQLSEKHAAL 118
                    89*************98 PP

>> TraE  TraE protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   0.0   0.00037      0.41      85     122 ..     691     728 ..     687     731 .. 0.91

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.00037
        TraE  85 tPetvdyqfneLlklvapeaygelkkqlaeeaerikks 122
                 t++ vd+q+++L++l++p++++e+  + ae+a++++k+
  KOO23577.1 691 TSAAVDAQRQALSRLAHPSTWEEVIGDPAEKARKMEKA 728
                 8999********************99999999999875 PP

>> HAP1_N  HAP1 N-terminal conserved region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   6.1   0.00034      0.38     218     293 ..      45     120 ..      39     134 .. 0.83

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.00034
      HAP1_N 218 iaelseelarkleelerqqeeissLlaqivdlqqklkelgveneelkqhLaaskeaqrqLtaELqdlqekyaeveg 293
                  +els  l  ++eel+   ++ +    qi +l+++ ++l+ e++++  hL       ++L+aE+ +l ek+a    
  KOO23577.1  45 TEELSAMLRLRSEELNARDNDLTACGEQIEHLEKHAERLKLERDDFARHLGTRTLELEKLQAEFDQLSEKHAALRL 120
                 6789999999999999999999999999999999999999999999999999888888999999999999986655 PP

>> ADIP  Afadin- and alpha -actinin-Binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   4.7   0.00046      0.51      61     126 ..      65     130 ..      48     134 .. 0.83

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00046
        ADIP  61 tirkleaeierlqskierlktqleqlerelalvqakerqlekklktleqklknekeelqrlknalq 126
                 ++      ie+l++  erlk +  +++r l + + ++ +l+++  +l++k+  ++ e++r ++ ++
  KOO23577.1  65 DLTACGEQIEHLEKHAERLKLERDDFARHLGTRTLELEKLQAEFDQLSEKHAALRLEFTRVRTENE 130
                 344445689***************************************************999876 PP

>> APG6_N  Apg6 coiled-coil region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   6.2   0.00085      0.95      65     125 ..      54     114 ..      36     137 .. 0.54

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.00085
      APG6_N  65 elleeLkelekereeleaelaaleeelealeeeeerfwreynelqlelleleeeldsleaq 125
                    eeL++ ++   +  ++++ le+ +e+l+ e + f r      lel++l+ e d+l  +
  KOO23577.1  54 LRSEELNARDNDLTACGEQIEHLEKHAERLKLERDDFARHLGTRTLELEKLQAEFDQLSEK 114
                 3344444444444444555555555555555555555555555555555555555555433 PP

>> Fez1  Fez1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.9   9.7e-05      0.11      19      99 ..      52     132 ..      36     166 .. 0.78
   2 ?   -2.6   0.1       5.8   6.5e+03      76      88 ..     674     686 ..     620     735 .. 0.45

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 9.7e-05
        Fez1  19 Lkdsqaevtqklseivalkaqlrelrakleekeeeikeleesleektlelevcenelqrkkseaellrekvekleeelkel 99 
                 L+    e++++ +++ a   q+  l+++ e+   e +++  +l ++tlele++++e+++ ++++  lr + +++ +e +  
  KOO23577.1  52 LRLRSEELNARDNDLTACGEQIEHLEKHAERLKLERDDFARHLGTRTLELEKLQAEFDQLSEKHAALRLEFTRVRTENETY 132
                 566667888888888888888888888888888888888888888999999999999888888888888888887776654 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 5.8
        Fez1  76 qrkkseaellrek 88 
                 +r +++  +  ek
  KOO23577.1 674 KRYEQSYYNNPEK 686
                 1112222222222 PP

>> ATG16  Autophagy protein 16 (ATG16)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   9.4   0.00076      0.86      93     182 ..      41     130 ..      39     134 .. 0.94
   2 ?   -2.3   0.1         4   4.4e+03      30      64 ..     665     702 ..     637     755 .. 0.50

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.00076
       ATG16  93 lyksrgelaqrllelneelqkleeklkedeerlaeleaeraaletklkdreeelrekeklvqdlqDElsaLqlqlnqaEeklrklekENk 182
                 ++++ +el+ +l+  +eel ++++ l++  e++++le++ ++l+ +++d + +l  ++  +++lq E ++L  +   +  +  ++++EN+
  KOO23577.1  41 VLRKTEELSAMLRLRSEELNARDNDLTACGEQIEHLEKHAERLKLERDDFARHLGTRTLELEKLQAEFDQLSEKHAALRLEFTRVRTENE 130
                 67999******************************************************************9999999888888888886 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 4
       ATG16  30 rtsaleaenaklekaaasaks....sksskksakekeas 64 
                 r +al+  ++++e++  ++++    s +s++++ +++a 
  KOO23577.1 665 RLRALANTHKRYEQSYYNNPEkfgaS-TSAAVDAQRQAL 702
                 45555555555555544444444422.222222222222 PP

>> CEP63  Centrosomal protein of 63 kDa
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.1   4.9   0.00096       1.1      29     108 ..      44     126 ..      42     142 .. 0.85
   2 ?   -1.8   0.1       2.1   2.4e+03      82     109 ..     627     654 ..     619     731 .. 0.67

  Alignments for each domain:
  == domain 1  score: 9.1 bits;  conditional E-value: 0.00096
       CEP63  29 qtraletrlkireeeLasarnaldekhkEvgllrqqleelekekqelvak...yeqqlqklreelsklkrsyekLqrkqlkea 108
                 +t+ l ++l++r eeL++  n l +  + ++ l+++ e+l+ e+ + +++   +  +l+kl++e+++l++ +  L+    +  
  KOO23577.1  44 KTEELSAMLRLRSEELNARDNDLTACGEQIEHLEKHAERLKLERDDFARHlgtRTLELEKLQAEFDQLSEKHAALRLEFTRVR 126
                 6778999***************************************998622256789***********99999987766554 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 2.1
       CEP63  82 qlqklreelsklkrsyekLqrkqlkear 109
                 + + l+e l +lkrs+  L    l + +
  KOO23577.1 627 ETETLQEILTRLKRSHLLLIDTYLDDMK 654
                 5667888888888888777665555554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (777 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       674  (0.0375927); expected 358.6 (0.02)
Passed bias filter:                      553  (0.0308439); expected 358.6 (0.02)
Passed Vit filter:                        90  (0.0050198); expected 17.9 (0.001)
Passed Fwd filter:                        20  (0.00111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              16  [number of targets reported over threshold]
# CPU time: 0.73u 0.30s 00:00:01.03 Elapsed: 00:00:00.46
# Mc/sec: 5106.02
//
Query:       KOO23578.1  [L=143]
Description: hypothetical protein Ctob_003652 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    0.00012   22.9   0.0    0.00016   22.5   0.0    1.1  1  2OG-FeII_Oxy_3  2OG-Fe(II) oxygenase superfamily


Domain annotation for each model (and alignments):
>> 2OG-FeII_Oxy_3  2OG-Fe(II) oxygenase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.5   0.0   8.7e-09   0.00016      11      96 .]      54     131 ..      44     131 .. 0.84

  Alignments for each domain:
  == domain 1  score: 22.5 bits;  conditional E-value: 8.7e-09
                     EEEEE-SS----TT.-.EEEEEEEEE....ET-B--EEE............---TT-EEEEE-..B-TEEE--B.-SS-EEEEEEEEE CS
  2OG-FeII_Oxy_3  11 eykpHvDnfekeegsgqrrltvllyLnekeseeGGelelyekdk..eavkikpkkgrlvlFesdellpHevlpvtkggeRlsltgwir 96 
                     ++  HvD        +   +++ + L++++++eGG  ++ ++++  ++v ++p++g+++  + + +  H+  p t  g R++++g++r
      KOO23578.1  54 GLGIHVDD-------DGLGISFNILLSDPSTFEGGGTRFPPNAHteDEVVYAPQRGQMLSHYGGLR--HASVPCTG-GLRYIMVGFLR 131
                     57889993.......34789******99999********7777798888899***********888..*****965.5******9985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (143 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       158  (0.00881254); expected 358.6 (0.02)
Passed bias filter:                      157  (0.00875676); expected 358.6 (0.02)
Passed Vit filter:                         9  (0.00050198); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.24s 00:00:00.60 Elapsed: 00:00:00.39
# Mc/sec: 1104.25
//
Query:       KOO23579.1  [L=396]
Description: oxidoreductase domain protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.7e-16   60.0   0.1    1.3e-15   58.3   0.1    1.9  1  GFO_IDH_MocA    Oxidoreductase family, NAD-binding Rossmann f
  ------ inclusion threshold ------
       0.12   12.8   0.1       0.28   11.6   0.1    1.6  1  Semialdhyde_dh  Semialdehyde dehydrogenase, NAD binding domai


Domain annotation for each model (and alignments):
>> GFO_IDH_MocA  Oxidoreductase family, NAD-binding Rossmann fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.3   0.1   1.4e-19   1.3e-15       2     113 ..       9     135 ..       8     140 .. 0.90

  Alignments for each domain:
  == domain 1  score: 58.3 bits;  conditional E-value: 1.4e-19
                   EEEEETTSHH.HHHHHHHHHHTTTTEEEEEEECSSHHHHHHH............HHHTTHEEESSHHHHHTCT...TESEEEE-S-GGGHHHHHHHH CS
  GFO_IDH_MocA   2 rvaiiGaGki.gskhlrplnesqrleevvalldpdaeraeav............aesfgveaysdleelladp...eidavivatpngtheelakaa 82 
                   rva++G+G   + +hl p  +++ ++evva++dp ++                 a+++ +  y+++ee+lad    + d v+ a p + h+++  a+
    KOO23579.1   9 RVAVVGCGGWtQGWHL-PNLAHRTDAEVVAVVDPTEQPGVGGcvpsicapmpevAAKYSARWYKSIEEVLADNdelKLDGVLCAAPHQVHAKVGTAV 104
                   89*****888355666.6666669**********99877666799999999999*****************998888******************** PP

                   HHTT-EEEEESSS-SSHHHHHHHHHHHHHHT CS
  GFO_IDH_MocA  83 leagkhvllEKPlattveeakelvelaekkg 113
                   leag h+l+EKP++++ +ea+ l++la+++ 
    KOO23579.1 105 LEAGLHLLMEKPMTADTTEARMLLDLARSRP 135
                   ***************************9875 PP

>> Semialdhyde_dh  Semialdehyde dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.1   3.1e-05      0.28       2      92 ..      10     110 ..       9     113 .. 0.66

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 3.1e-05
                     EEEETTTSHHHHHHHHHHHCTSSEEEEEEEESTT..TTTSBHHHHSG.......GGTTTECEBEEE..GGGGGCTT-SEEEE-SCHHHHHHHHHH CS
  Semialdhyde_dh   2 vaivGatGyvGqellrlLeehpevelvvllsssr..saGkklaeavk.......aleegkdlkved..vdeeelkevdivflalpagvskelapk 85 
                     va+vG+ G +    l  L++  ++e+v+++  ++    G  + + +        + + +   ++e+  +d++el ++d v++a+p++v++++  +
      KOO23579.1  10 VAVVGCGGWTQGWHLPNLAHRTDAEVVAVVDPTEqpGVGGCVPSICApmpevaaKYSARWYKSIEEvlADNDEL-KLDGVLCAAPHQVHAKVGTA 103
                     77777777776666666666666666666655554456677777766666665522333333444442445555.9******************* PP

                     HHHTTSE CS
  Semialdhyde_dh  86 laeagvk 92 
                     ++eag++
      KOO23579.1 104 VLEAGLH 110
                     ***9975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (396 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       353  (0.0196888); expected 358.6 (0.02)
Passed bias filter:                      306  (0.0170673); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.50u 0.25s 00:00:00.75 Elapsed: 00:00:00.44
# Mc/sec: 2716.24
//
Query:       KOO23580.1  [L=513]
Description: surface protein with egf [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.7e-46  158.3   0.0    3.8e-46  157.8   0.0    1.2  1  IDO       Indoleamine 2,3-dioxygenase
  ------ inclusion threshold ------
      0.086   11.0   0.1       0.13   10.4   0.1    1.1  1  MNR       Protein moonraker
       0.19   12.3   0.1       0.37   11.4   0.1    1.4  1  POTRA     Surface antigen variable number repeat


Domain annotation for each model (and alignments):
>> IDO  Indoleamine 2,3-dioxygenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  157.8   0.0   6.4e-50   3.8e-46       2     373 ..      31     399 ..      30     439 .. 0.89

  Alignments for each domain:
  == domain 1  score: 157.8 bits;  conditional E-value: 6.4e-50
                 HGSST-BTTTBTS.-SS--SS--G.GGHHHHHHHHTH........HHHHHTTHHHHHHH.TS----STT--SHHHHHHHHHHHHHHHHHHHHTT.SS-- CS
         IDO   2 ledfdvsektGFlpeeaPlerLpdeyyepWeellenl........relieserlRekvr.klpvlstdeLkseeelrrAhlvLaflahaYvwse.gkkp 90 
                 l +f v  ++GFlp+++Pl rLp++ y++  ell+++        + l++  ++ e+v+ +lp+ +t+++++++ l   +   +f   +Y  +  +  +
  KOO23580.1  31 LPQFMVGMNNGFLPRQKPLVRLPSA-YKELDELLDDMpvikkngqSGLLHFGSFGEAVStRLPLYDTTHVHDQQLLSALFRDYTFACSSYLMEPcD-LA 127
                 5789********************7.****************999889999*******956***********99999999999*********9531.22 PP

                 -S..............EE-HHHHHHHHHHHHHHTS-SS--HH.HHTTSSEEESSTTS-.SSG...GGEEES--SSTTSSHHHHHHHHHHHHHHHHHHHT CS
         IDO  91 se..............vlPasiavPllevsekLelpPvltYa.dlvLwNfkkldeeeelsklleldnlrilttftgtedeewFylvsvaiEargaealk 174
                  +              +lPa+iavPl ++++kL+ +P + Ya +  L+Nf+ + ++   + +l+++n+++++ f g + e  F+ v +a+  +  ++++
  KOO23580.1 128 -SrtdkfakalplgrdRLPANIAVPLADIAAKLQAKPFMEYAlSYALYNFSVK-ND---ALPLQPENIELIRAFHGGQAEFGFIAVHIAMVQHSGRLVR 221
                 .2356899*********************************95689****443.33...3799************************************ PP

                 THHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHHHHTTHHHHS-HHHHHHTHHHHH--SSSBGG..GTT-BEETTTE...SSEB-B---GGGG-HHHHHH CS
         IDO 175 lmlsaldeareadearvtsaLerlaevideltklLervrekcdpevFYhkiRpflaGskndaeaglpegvlyegveegkeevrqlsGgSagQSsliqal 273
                 + +++ld+++++d+    +a+++l +v++ +++ +e++ ++ dp+  Y ++R f+ G+k++     p+gv+yegv++   + + ++G S +  s+i ++
  KOO23580.1 222 ATRDVLDNVEARDRPGTDAAMATLLQVMKTIQDSMETMWRHSDPDK-YLQFRSFIMGTKSQPM--FPNGVVYEGVAD---QATFFRGESGANDSMIPTM 314
                 ********************************************98.89********666655..8********974...44579************** PP

                 HHHTT--TT.............S.SSHHHHHHHHHGGGS-HHHHHHHHHHHT.S..--HHHHHHHTT-HH...HHHHHHHHHHHHHHHHHHHHHHHHHH CS
         IDO 274 DvfLgvehertgekaaeakkesekkkaeesFleemrkYmPgphrrFLehles.a..asirelvlsaeseeeeelreaYnaaveaLkelRdkHikivtlY 369
                 D +L+      +             +  ++ l++ r+Y P +h ++L h+e+ a   ++r+++++++     + +  Y a +++++e+Rd+H k +  Y
  KOO23580.1 315 DNLLQLTSVMPN-------------NPLTDILKDFRSYRPVHHSQWLAHVEDeArrVNVRRFAQAES-----NSAVLYLALLDQVREFRDRHWKFAKEY 395
                 ******999311.............224689*******************87433378999993333.....34789********************** PP

                 THHH CS
         IDO 370 ivlp 373
                 i+  
  KOO23580.1 396 IIKH 399
                 **86 PP

>> MNR  Protein moonraker
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.1   2.2e-05      0.13     244     290 ..     352     400 ..     349     405 .. 0.87

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 2.2e-05
         MNR 244 pdEerrvrvrRqeqavRsArmLYv.LqqqvkeiqeeldkLsPhk.ikHt 290
                  dE rrv vrR  qa     +LY  L  qv+e+++   k + +  ikHt
  KOO23580.1 352 EDEARRVNVRRFAQAESNSAVLYLaLLDQVREFRDRHWKFAKEYiIKHT 400
                 59*************988888885599*********9999877536998 PP

>> POTRA  Surface antigen variable number repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.1   6.3e-05      0.37      23      60 ..     426     465 ..     417     480 .. 0.80

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 6.3e-05
                 TSSSTTSBHCHHHHHHHHHHHHHHHHCTT-EE.EE...EEE CS
       POTRA  23 lelkegdvynpekleadkealksryanlGyfdasV...qve 60 
                 + + + ++ n+++l+a+ + +++++ ++G++ a++   +v+
  KOO23580.1 426 M-TETSKLINRDELTAANRVMANDLTRRGVVQARIlkrEVK 465
                 4.57889****************************865443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (513 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       492  (0.0274416); expected 358.6 (0.02)
Passed bias filter:                      431  (0.0240393); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.53u 0.25s 00:00:00.78 Elapsed: 00:00:00.40
# Mc/sec: 3862.79
//
Query:       KOO23581.1  [L=199]
Description: hypothetical protein Ctob_003651 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.4e-06   28.5   0.0    7.5e-06   26.1   0.0    1.9  1  Nucleotid_trans  Nucleotide-diphospho-sugar transferase


Domain annotation for each model (and alignments):
>> Nucleotid_trans  Nucleotide-diphospho-sugar transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.1   0.0   4.2e-10   7.5e-06      51      98 ..       5      56 ..       2     171 .. 0.70

  Alignments for each domain:
  == domain 1  score: 26.1 bits;  conditional E-value: 4.2e-10
  Nucleotid_trans 51 mswrkvrlllell.klGynvllsDvDvvWlrnpfpllky...edaDvlvssD 98
                     ++ ++ ++l +l+ +lGynv+ +D+Dv W+ np p+lk      + ++v+ D
       KOO23581.1  5 FYNVRKHMLSRLAgELGYNVIQTDTDVAWFANPYPALKAgvlAAHQLVVQPD 56
                     566788888888769**********************544445555555545 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (199 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       343  (0.019131); expected 358.6 (0.02)
Passed bias filter:                      307  (0.0171231); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.24s 00:00:00.63 Elapsed: 00:00:00.38
# Mc/sec: 1554.85
//
Query:       KOO23582.1  [L=528]
Description: hypothetical protein Ctob_003658 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
  ------ inclusion threshold ------
      0.039   14.0   0.1      0.039   14.0   0.1    3.8  3  Rootletin        Ciliary rootlet component, centrosome cohesi
        2.2    8.0   6.5       0.77    9.5   2.5    2.3  2  FlgO             FlgO protein


Domain annotation for each model (and alignments):
>> Rootletin  Ciliary rootlet component, centrosome cohesion
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -8.6  22.4         2   1.8e+04      15     166 ..      33     183 ..      22     190 .. 0.53
   2 ?  -11.6  29.5         2   1.8e+04      14     143 ..     132     273 ..     122     318 .. 0.56
   3 ?   14.0   0.1   4.3e-06     0.039      70     127 ..     407     464 ..     368     471 .. 0.82

  Alignments for each domain:
  == domain 1  score: -8.6 bits;  conditional E-value: 2
   Rootletin  15 aqLvskLqaKvlqYkkrcseleqrllektselektkltlllssareleeeesadl.eealakLeeErqrseklaqvnslLreqleearqaneaLtedlq 112
                 +q +++L++ +++ k   + l ++ + + +  + ++ + ++ + ++ +++ s++    a a+L++E  +  ++++     r q e+ar++     e++q
  KOO23582.1  33 QQQLAQLRTELQDVKSEHATLLSHATMHIAGERDEHYRAMMRHLEQTHKQVSDNArAAAAANLNNELIKQREMLERTIAERFQEEAARREA--QVEEFQ 129
                 2223445555555555555554444442222222222222222222222222222245566777777777776666555555555554433..345555 PP

   Rootletin 113 kltkdwerlreeleqkekewreeeeafneylssehsrllsLWrevvavrrqfse 166
                 +  k +e   ++    +k+++    + ++ l+ e +++ +L   v+++rr+ +e
  KOO23582.1 130 RQIKALEIKLQQKVYANKDLEGTLASTKDELKVEAEKVWELRDMVARIRREHAE 183
                 555555544445555566666666678888888888888888888888887665 PP

  == domain 2  score: -11.6 bits;  conditional E-value: 2
   Rootletin  14 qaqLvskLqaKvlqYkkrcseleqrllektselektkltlll..ssareleeeesadl.................eealakLeeErq.rseklaqvnsl 92 
                   +L  kLq+Kv       ++le+ l++++ el+ +  + +    +  ++++e+ ++l                 e    kLee+ + + ++la++   
  KOO23582.1 132 IKALEIKLQQKVY----ANKDLEGTLASTKDELKVEAEKVWElrDMVARIRREHAEQLvrekkvgyvdeallrasEAREMKLEEDLKlKVAQLAEE--- 223
                 2233334444443....3445555555533333333333333443344555555555556666666655555554444445555544344444444... PP

   Rootletin  93 LreqleearqaneaLtedlqkltkdwerlreeleqkekewreeeeafneyl 143
                  + +le++++  ++ +++l k+++++ ++++ele++++e  +e+ea ++ l
  KOO23582.1 224 -KRKLEAEKKRAQEAEDELFKTRDQLLHVKDELEHEKTERVKEREAAAALL 273
                 .33456666666666777777777777777777777777666666655544 PP

  == domain 3  score: 14.0 bits;  conditional E-value: 4.3e-06
   Rootletin  70 eealakLeeErqrseklaqvnslLreqleearqaneaLtedlqkltkdwerlreeleq 127
                   a a+Le E  +s+ l++  + L ++l ear++ ea + ++   +++ + ++e l q
  KOO23582.1 407 AAAEARLEAEEAKSAALEEAKAALDKELAEARAEAEAARAEAASAKAEAQAAAEALAQ 464
                 367789*******************************************999998876 PP

>> FlgO  FlgO protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.1      0.48   4.3e+03      36      60 ..      25      46 ..      20      61 .. 0.66
   2 ?    9.5   2.5   8.6e-05      0.77       3      80 ..      72     149 ..      69     167 .. 0.79

  Alignments for each domain:
  == domain 1  score: -2.6 bits;  conditional E-value: 0.48
        FlgO 36 stLGrqlaEsliselqqrgykvvel 60
                 +LG +l+++ +++    + +++++
  KOO23582.1 25 LQLGSVLQQQQLAQ---LRTELQDV 46
                56777777764444...44445555 PP

  == domain 2  score: 9.5 bits;  conditional E-value: 8.6e-05
        FlgO   3 ladqLlanldeleskekpiavtsfvdlddlqktstLGrqlaEsliselqqrgykvvelklt.nsisvteegefvlsRdl 80 
                 ++++L ++ ++ ++ + + a +   + + +++ ++L r++aE + +e ++r+ +v e++ + ++++++ ++ ++  +dl
  KOO23582.1  72 MMRHLEQTHKQVSD-NARAAAAANLNNELIKQREMLERTIAERFQEEAARREAQVEEFQRQiKALEIKLQQKVYANKDL 149
                 44555555554433.3377777777778999***************************999999999987777777776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (528 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      3206  (0.178816); expected 358.6 (0.02)
Passed bias filter:                      594  (0.0331307); expected 358.6 (0.02)
Passed Vit filter:                       124  (0.00691617); expected 17.9 (0.001)
Passed Fwd filter:                        47  (0.00262145); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 1.24u 0.32s 00:00:01.56 Elapsed: 00:00:00.52
# Mc/sec: 3076.77
//
Query:       KOO23583.1  [L=646]
Description: fatty-acid amide hydrolase 2 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.1e-67  229.0   0.0    2.2e-67  228.0   0.0    1.5  1  Amidase   Amidase


Domain annotation for each model (and alignments):
>> Amidase  Amidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  228.0   0.0   1.2e-71   2.2e-67       2     448 ..     160     623 ..     159     626 .. 0.82

  Alignments for each domain:
  == domain 1  score: 228.0 bits;  conditional E-value: 1.2e-71
                 HHHHHHHHHHHHHHHH--EEEEEHCCCCHHHHT---TTT..........TTTT-EEEEETTB--TTSB--TTSGGGTT-B-SS--HHHHHHHHTT-EEE CS
     Amidase   2 lveaflkrieavneklnalvtvfieealaqAakldkkra....rgkekgpLhGvPisvKDnidvkgvpttaGskalenypaekDatvverLkkaGavil 96 
                 l+e +++++ +++e+lnal +  +e+al++A+++d++ a    +  +  pL GvPi+vK++++++g+p taG+ +l++++  + a  ++rL +aG  il
  KOO23583.1 160 LTELCVQQLLRADESLNALTARRFEDALKEADAADAAVAagraPPVSIAPLWGVPILVKECFEIAGLPFTAGVASLTGRVGLTTAPSMTRLAEAGLPIL 258
                 7999********************************99943223335679************************************************* PP

                 EEE--SGGG-SSSSTT-TT---BBTTCT.CCB--SSSHHHHHHHHTTSSSCEEEEESSSTTHHHHHHCTSEEEE--TTSC--TTB-......-SSTTT- CS
     Amidase  97 gkTnmdefamgsstensvfgptrNPwdk.srtpGGSSGGsAAavAaglvplaiGtDtGGSiRiPAsfcglvGlKPtygrvSragvv......alessld 188
                 g Tn++e++m+ ++ n+++g+ +NP    +rtpGGSSGG AA+vAa ++pla+ +D+GGS RiP+ +cgl+G+KPt g ++ +g        +l s+  
  KOO23583.1 259 GSTNVSEACMFHEAANPIYGRSVNPHGGgTRTPGGSSGGAAALVAAAGAPLAVTSDVGGSTRIPSLYCGLFGHKPTGGTIPNSGTLphvppdSLVSIYC 357
                 *************************975278************************************************************99****** PP

                 EEEEEESSHHHHHHHHHHHBS--TT-TTS----HHHHHHHHCTT---TT-EEEEEGGGC.....SS---CCHHHHHHHHHHHHHCTT-EEEEE...E-C CS
     Amidase 189 vvGplarsvedlalllrvilgedpkdstssvipeesedlaeelkkslkglriGvvkedg.....vasldpevqravekalkaLeeaGhevvev...elp 279
                 + Gp +r + dl  ll +++g d  d+ + +  ++s   a+++  +   l + v  e +        l+pe+++a ++a++aL++ G++vv++   elp
  KOO23583.1 358 QLGPTTRHACDLYPLLVTLAGADGIDRVCRPDARASLLAASPRDVDVASLTVFVFDEPFlpwplRSGLHPELRAAQARAVAALSARGCKVVHIghaELP 456
                 ***********************99999888556677777777777777777777777798888789**********************9986222677 PP

                 CGGGHHHHHHHHHHHHHHHHTTT-SSSSS.---SS-SCCCCCCCHHHH..CCS-HHHHHHHHHHHHHCSCCCCCCCHHHHHHHHHHHHHHHHHHCCC.. CS
     Amidase 280 sleealslyylilvaeassnlarylgvry.erlsetkvlsellpksra..ellgeevkrrielgnyalsaeasskyylkaqkvrrllrrefakafee.. 373
                 + ++a+s++ + l+a+ +  ++ +  +    r +++ +++++  +  +  ++ g+  ++ ++  + al ++  ++ + +    rr ++ +  k+  +  
  KOO23583.1 457 ETAYAFSIWSATLAAAQALPFR-H-II-SdGRRDGPYTVWQVGLEALRclRGGGQTARHTLPAVGLALVETL-DACLDRLFSSRRTMIGKGLKLRTRld 551
                 7777777666655555543333.2.22.24666777777776666655467777777777777777777764.55555555555555444444433333 PP

                 ......BSEEEEESSSSS--BCCCCCHHHCSHHHHHGCCTTT...HHHHHTT--EEEEECCCC.T.TECEEEEEEESTT-HH CS
     Amidase 374 ......lDvllsPtaptpaprlgekdktidsytvlynlldftavvvpvnlaglpalsvpagks.edglPvGvqvigkafqee 448
                         vl++P+  tpapr++e          l ++ d    + ++n+  lpa++vp+g +  + lP+G qv+g ++ ++
  KOO23583.1 552 allgagTAVLVCPSLLTPAPRHHEN---------LLRFPDAG-QCGLWNVLALPATAVPLGADpRTKLPLGCQVVGGYGCDR 623
                 3444488899999999999999977.........45566665.6689****************999**********998775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (646 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       428  (0.0238719); expected 358.6 (0.02)
Passed bias filter:                      360  (0.0200792); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.56u 0.28s 00:00:00.84 Elapsed: 00:00:00.42
# Mc/sec: 4613.86
//
Query:       KOO23584.1  [L=374]
Description: putative inactive purple acid phosphatase 29-like protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.7e-14   54.1   0.1    3.6e-14   53.7   0.1    1.2  1  Metallophos    Calcineurin-like phosphoesterase
      0.003   17.8   0.0      0.016   15.4   0.0    1.9  2  Metallophos_2  Calcineurin-like phosphoesterase superfamily d


Domain annotation for each model (and alignments):
>> Metallophos  Calcineurin-like phosphoesterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.7   0.1     4e-18   3.6e-14       1     203 [.      23     249 ..      23     250 .. 0.67

  Alignments for each domain:
  == domain 1  score: 53.7 bits;  conditional E-value: 4e-18
                  EEEEEEESBTB...........TTCCTHHHHHHHHHHHHHHHTTESEEEEESTSSSSS.HHHHHHHHH.HHHHHHHTSEEEEEC-TTSCHHHHHHHHH CS
  Metallophos   1 lrilvigDlHl...........algggqlddllkllddllreekpdlvllaGDlvdrg.dlekellel.laalvkypipvylllGNHegfeeellnky 85 
                  lri++i+D+H+           + ++ +++++ ++l+ +lr+e+p lv  +GD++d+   ++k+ ++  +   +    p+++ lGNH+    e + + 
   KOO23584.1  23 LRIVHISDTHYhplqpsckdvpEGQPCSHRNTTTFLESVLRKEQPHLVAYTGDIIDGDsKPPKDAMDDlYGVAITAELPWAASLGNHD----EESFL- 115
                  69********************99*********************************88666667766577777779***********....22222. PP

                  HHHHHHHHHHEHHHCEEETSEEEEEETTEEEEEEEESECEEE......THHHHHHHHHHHSCHHHHCC.......HHHHHHHHHHTTCSEEEEEESSE CS
  Metallophos  86 gylgifsepwrsdaevfnnlplaslgsgslkvlllhGgspel......lvsldklgslnleleapepg.......dewlkdlekrekadwvivlgHsp 170
                             s +ev++++ +    ++  ++  + G  p+        + ++ ++ + ++ ++++           w+++  +  +  +++++ H+p
   KOO23584.1 116 -----------SRDEVMQYITSMPRTKT--EYGPVAGS-PGNfyidvlANATTVARLVFFDSRIDHVSlsinneqVAWFENITASLPPVPTLAFYHIP 199
                  ...........22444444444443333..33333332.11123233333334444444444444444555555588999955666666666666777 PP

                  SS.................CSSSCSCCHHHHHHHHHHTTESEEEEESSSS CS
  Metallophos 171 ly.................rgsgylfgdealedllkkygvdlvisGHtHv 203
                  l                  + +++  +++ + + l+++gv + ++GH+H+
   KOO23584.1 200 LReyqdaidahqpisgamrEPICDDLPNPGVFPALQRGGVVAGFCGHDHT 249
                  775555555555555777766666666666669****************7 PP

>> Metallophos_2  Calcineurin-like phosphoesterase superfamily domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.0   1.8e-06     0.016       2      70 ..      24     120 ..      23     145 .. 0.76
   2 ?   -0.3   0.0      0.12   1.1e+03     121     130 ..     241     250 ..     224     284 .. 0.75

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 1.8e-06
  Metallophos_2   2 klaiiSDlH.................snldaleavlealkevgvdaiihaGDl..eeeep..evleellela.....pvlaVrGNnDeev..veed 69 
                    ++++iSD+H                 s+++ +  + + l+++++ ++  +GD+  ++++p  +++++l  +a     p  a  GN+Dee    +++
     KOO23584.1  24 RIVHISDTHyhplqpsckdvpegqpcSHRNTTTFLESVLRKEQPHLVAYTGDIidGDSKPpkDAMDDLYGVAitaelPWAASLGNHDEESflSRDE 119
                    899**********************65555555555567778899*******9886666644488888887788999**********333333333 PP

  Metallophos_2  70 v 70 
                    v
     KOO23584.1 120 V 120
                    3 PP

  == domain 2  score: -0.3 bits;  conditional E-value: 0.12
  Metallophos_2 121 vvvcGHtHvp 130
                      +cGH H+ 
     KOO23584.1 241 AGFCGHDHTN 250
                    569*****87 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (374 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       277  (0.0154498); expected 358.6 (0.02)
Passed bias filter:                      267  (0.0148921); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.45u 0.22s 00:00:00.67 Elapsed: 00:00:00.39
# Mc/sec: 2912.06
//
Query:       KOO23585.1  [L=652]
Description: e3 ubiquitin-protein ligase upl3 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    7.4e-76  255.6   0.0      1e-75  255.1   0.0    1.2  1  HECT      HECT-domain (ubiquitin-transferase)


Domain annotation for each model (and alignments):
>> HECT  HECT-domain (ubiquitin-transferase)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  255.1   0.0   5.6e-80     1e-75       1     306 [.     292     651 ..     292     652 .] 0.93

  Alignments for each domain:
  == domain 1  score: 255.1 bits;  conditional E-value: 5.6e-80
                 HHHHHHHT-GGGSSEEESSTTSSSEEE-TTHHHHS......................................HHHHHHHHHHHHHTT--BSS-B-HHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..................................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        HECT   1 tllskelldpklglfeeesedsgtlypkpssseee..................................llklfeflGkvlGkaiyeeilldlpfsraf 65 
                 tl+s+el +++l+l+  es ++++ ++ ++   ++                                  +l+lf f+Gk+++ka+++++l+dlpf + f
  KOO23585.1 292 TLVSRELRRSELRLWVDESASAASAKEVSD--MDKiktgdeeasyvyaacglyprpiaqgadgsgvparTLQLFGFMGKFVAKAMLDNRLVDLPFCQTF 388
                 5899***********433333333332222..222446777888889999999999*************8899************************** PP

                 HHHHTT-.---TCHHHHH-HHHHHHHHHHH..HS-GGG.........................GT-BSEEEEETTEEEEEESSTTGGGSB--TTTHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx......................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        HECT  66 lkfllgeekitledleeidpelakslkellslesntee......................vedlaLtFtipenagasatieLipnGanipVtnenkkeY 142
                 +k+llg e+++l+dl+e++p+la++l++l++l ++ ++                      v dl+L+ t+p   ga  +ieL+p+G   +Vt +n+ eY
  KOO23585.1 389 YKQLLG-EPLSLADLAEVNPSLASQLQKLQRLAHQRTAllrggakpsdasvkalkldgveVGDLGLDLTLP---GAP-EIELCPDGGARDVTLDNVGEY 482
                 ******.5************************999988*********************************...999.********************* PP

                 HHHHHHHHHTGGGHHHHHHHHHHHHTTS-HHHHTTS-HHHHHHHHBCSSS.--HHHHHHTEEEETT--TTSHHHHHHHHHHHHS-HHHHHHHHHHHHSS CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        HECT 143 iklyvnyllkksvekqleaflkGfsevipskalklfdaeelellisGedelidvedlrrnteykggynaesetiewlweilkefspeekrlfLqFvTgs 241
                 ++++ + +l + v  q++af++Gfs v+p ++l++f ++el+ +++G++e ++v+++ +++++++gy++ s+ i  l+eil e+sp e + fL+FvTgs
  KOO23585.1 483 VQRVLDVYLVEAVLAQIKAFREGFSAVFPIEHLSAFAPSELDCVLNGSKEAWEVSTIVEYLKFDHGYTRASKAIGFLLEILCEMSPGEVATFLKFVTGS 581
                 *************************************************************************************************** PP

                 SS--TTCGGG-B--EEEEE-S......-TTS--EEEGGGTEEEE---SSHHHHHHHHHHHHHHHH-.-XX CS
                 xxxxxxxxxxxxxxxxxxxxxx....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxx RF
        HECT 242 srlPlgGfaelhpkftierksk....edetrLPtahTCfnlLklpdYsskeilkekLltAieeteg.Fel 306
                 +rlP+gG+a l+p++ti++k      +++ +LP+++TC n+ klpdYssk ++k++L tAi+e++g F l
  KOO23585.1 582 PRLPVGGLARLNPRLTIVQKRPedgiSPDAYLPSVMTCANYVKLPDYSSKVVMKQRLFTAINEGQGaFYL 651
                 *******************887899999************************************653765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (652 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       393  (0.0219198); expected 358.6 (0.02)
Passed bias filter:                      341  (0.0190195); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.54u 0.25s 00:00:00.79 Elapsed: 00:00:00.40
# Mc/sec: 4890.54
//
Query:       KOO23586.1  [L=262]
Description: DNAj-like subfamily b member 2 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.6e-27   95.4   4.4    2.7e-27   94.6   4.4    1.4  1  DnaJ      DnaJ domain
    3.5e-10   40.1   0.0    5.9e-10   39.4   0.0    1.3  1  DnaJ_C    DnaJ C terminal domain
  ------ inclusion threshold ------
      0.054   13.4   0.1        0.1   12.6   0.1    1.4  1  RPT       A repeated domain in UCH-protein


Domain annotation for each model (and alignments):
>> DnaJ  DnaJ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   94.6   4.4   4.6e-31   2.7e-27       2      63 .]       4      66 ..       3      66 .. 0.97

  Alignments for each domain:
  == domain 1  score: 94.6 bits;  conditional E-value: 4.6e-31
                HHHHHTSSTTG-HHHHHHHHHHHHHHHSTTTSCCHH.HHHHHHHHHHHHHHHHTSHHHHHHHH CS
        DnaJ  2 yYeiLgvskdasedeIkkaYrklalkyHPDknpkdp.eaeekFkeineAyevLsdpekRkqYD 63
                yYe+Lgv+k+as+de+kkaYrk+a+k+HPDkn++++  ae+kFkei+eAyevLsdp+k+++YD
  KOO23586.1  4 YYELLGVDKNASADELKKAYRKMAMKWHPDKNQDKKqVAEKKFKEIAEAYEVLSDPNKKEIYD 66
                9*******************************88888999**********************9 PP

>> DnaJ_C  DnaJ C terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.4   0.0   9.9e-14   5.9e-10       2      97 ..     141     220 ..     140     233 .. 0.90

  Alignments for each domain:
  == domain 1  score: 39.4 bits;  conditional E-value: 9.9e-14
                 EEEEEE-HHHHHH-.EEE.EEEE.......TEEEEEE-TT--TT-EEEETT-SSSS..S---EEEEEEE---SS-EEETTEEEEEEEEEHHHHHHT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
      DnaJ_C   2 eveleisleelykGktkkikikrnvikkekktlevkipaGikdgqkirlegeGdeeggepGDlivtikvkphpvFkrkgndlyveveislaeallG 97 
                 e++l+++leely+G+tk+ ++       e +t+ v++++G+k g+k+ ++ +G         + +++++++h++F+r  ndl + v+ sl e l+ 
  KOO23586.1 141 EHKLSCTLEELYRGATKTETV-------EGNTFRVEVQPGWKPGTKVNFDDRG---------VRFVVHEQKHERFERYSNDLATVVTCSLLEVLFN 220
                 799**************9665.......4568*********************.........789***99*************9999999998875 PP

>> RPT  A repeated domain in UCH-protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.1   1.7e-05       0.1       6      48 ..       5      52 ..       5      60 .. 0.87

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 1.7e-05
         RPT  6 yklLgidentdDdviitayqvkl.....eddpsqkdklrrALkvIAee 48
                y+lLg+d+n++ d++ +ay+        +++ + k ++ + +k IAe+
  KOO23586.1  5 YELLGVDKNASADELKKAYRKMAmkwhpDKNQDKKQVAEKKFKEIAEA 52
                99*****************96554446544779************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (262 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1240  (0.0691617); expected 358.6 (0.02)
Passed bias filter:                      931  (0.051927); expected 358.6 (0.02)
Passed Vit filter:                        81  (0.00451782); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.49u 0.30s 00:00:00.79 Elapsed: 00:00:00.45
# Mc/sec: 1765.55
//
Query:       KOO23587.1  [L=279]
Description: hypothetical protein Ctob_002759 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (279 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1869  (0.104245); expected 358.6 (0.02)
Passed bias filter:                      390  (0.0217525); expected 358.6 (0.02)
Passed Vit filter:                        68  (0.00379274); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.54u 0.30s 00:00:00.84 Elapsed: 00:00:00.42
# Mc/sec: 1981.97
//
Query:       KOO23588.1  [L=2237]
Description: ankyrin repeat-containing [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    7.1e-26   91.4   0.0    2.3e-24   86.5   0.0    2.7  3  VPS13          Vacuolar sorting-associated protein 13, N-term
    2.4e-16   60.1   0.4    1.2e-08   35.4   0.1    2.8  2  Ank_2          Ankyrin repeats (3 copies)
    2.5e-13   49.9   1.7    0.00089   19.5   0.0    5.0  4  Ank_5          Ankyrin repeats (many copies)
    9.9e-12   44.8  11.4    0.00084   19.7   0.0    5.8  6  Ank            Ankyrin repeat
    6.5e-10   39.2   0.0    1.6e-09   37.9   0.0    1.6  1  Chorein_N      N-terminal region of Chorein or VPS13
      1e-09   38.7   0.5    2.9e-06   27.7   0.1    4.1  4  Ank_4          Ankyrin repeats (many copies)
    2.7e-09   36.5   4.1      0.012   16.1   0.0    5.1  5  Ank_3          Ankyrin repeat
  ------ inclusion threshold ------
       0.79    7.6   1.3        3.9    5.3   1.6    1.7  2  V_ATPase_I     V-type ATPase 116kDa subunit family
        6.9    6.8   9.8         38    4.5   0.1    2.8  2  TolA_bind_tri  TolA binding protein trimerisation


Domain annotation for each model (and alignments):
>> VPS13  Vacuolar sorting-associated protein 13, N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   86.5   0.0   1.2e-27   2.3e-24       3     235 ..     177     419 ..     175     420 .. 0.83
   2 ?   -2.1   0.0       1.3   2.6e+03     138     171 ..     963     996 ..     935    1001 .. 0.76
   3 ?    0.9   0.5      0.17   3.3e+02     161     213 ..    1672    1729 ..    1665    1746 .. 0.70

  Alignments for each domain:
  == domain 1  score: 86.5 bits;  conditional E-value: 1.2e-27
       VPS13   3 esLiakIldNlqvtiknvHiryeDslsvpgrpfalGitLesLsaqstdenw......kptfikge........eseekivyKlvelesLavYwdsds.. 85 
                 +++i ++   ++  ++nvH+r++++++    p+alG++L++L++ +t +        k      +         +++  v+K +el++L +Y+ s +  
  KOO23588.1 177 DKIISSVAHRIEFVLTNVHVRLQEEVKDDPMPLALGVVLRRLAFINTLDAVvgtgggK------SgtggvaqhPRAKARVCKTLELQGLGIYLGSRAdl 269
                 68999999*****************66555************9776544341222221......123445565778999***************99855 PP

       VPS13  86 .sedksledlslee.leeafessikeksekakrhqYiLkPvsgeaklklnkkgetdapklkldleldevgltLseeqyrdilklleslsrlerreeyrk 182
                  se +++ + +  + +++ ++  i+  +        iL P++ ++ + l   g    +   +++ ++  gl++++ q+  ++++le+l+  err++y++
  KOO23588.1 270 tSEREAWLSPRAGSyWRRLMQPLIDAPE----GPAHILTPLDLKVVFDLGLAGLGL-SDGAVAVSVHGNGLCVRHGQFVLLMAVLEALDLKERRNHYAE 363
                 433667776666668*********8765....5789*******9888887555554.8899*************************************9 PP

       VPS13 183 l.rPkvsv.kenpraWWkYaikavleeirekrr.kwsweaiaerrdlrkrYvelyk 235
                   rP++   + +pr+WW++  ++ l e+r+k + k+ w++ ++rr++r +Y e+y 
  KOO23588.1 364 ArRPSSVAaSTAPREWWQFVGRCALLEVRRKGKlKLGWRNHRQRRERRAAYLEAYV 419
                 956888668******************9999999********************95 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 1.3
       VPS13 138 tdapklkldleldevgltLseeqyrdilkllesl 171
                  + p++++++ ++ ++l++s++ + ++  l  +l
  KOO23588.1 963 PEVPRVDVSVLVRAISLSVSDATVLELSGLYGNL 996
                 446*****************99888777666555 PP

  == domain 3  score: 0.9 bits;  conditional E-value: 0.17
       VPS13  161 yrdilklleslsrlerreeyrklrPkvsvkenpraWWkY.....aikavleeirekrr 213 
                   r il+ll++l++ + ++e ++ +P +s++++ +  ++Y      +++ l+e+r+ rr
  KOO23588.1 1672 SRRILALLQELHSTKLEMESAEQQPGQSEEQKRSVRLEYegrlkQVESRLDEMRRSRR 1729
                  5789***********************9888888999995443334444444333333 PP

>> Ank_2  Ankyrin repeats (3 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.4   0.1   5.9e-12   1.2e-08      25      79 ..    1791    1851 ..    1764    1878 .. 0.79
   2 !   22.0   0.0   9.5e-08   0.00019       1      83 []    1944    2051 ..    1944    2051 .. 0.76

  Alignments for each domain:
  == domain 1  score: 35.4 bits;  conditional E-value: 5.9e-12
       Ank_2   25 ngktaLhyAakngnleivklLleh...ad...ndgrtpLhyAarsghleivklLlekgadi 79  
                   +++aLh+Aa + ++ +vk+Ll     ++   +dg+ pLh+Aa sg+  i++lL+e+ ad+
  KOO23588.1 1791 GDHSALHVAAAYKHEAVVKMLLRVkaqVNkptSDGMLPLHFAAVSGSVGIIELLIEHRADP 1851
                  4578999999999988899999733454455588999999999999999999999988886 PP

  == domain 2  score: 22.0 bits;  conditional E-value: 9.5e-08
       Ank_2    1 LhlAakngnlelvklLl.egadpn..k.ngktaLhyAakngnle..........ivklLleh...........adnd..grtpLhyAarsghleivk 70  
                  L lAa  g+++ v+ Ll e adpn  + +g taL++A+++  +           +++lL+++           a ++   +t+Lh+A+r   +e++ 
  KOO23588.1 1944 LVLAAARGQDQDVRSLLrERADPNsfSpDG-TALQHACRAAIVSksrsrrpfllCAELLIAArasvdalpacsA-EEgpLKTALHLASRAVFPEAIG 2038
                  568999998899*****999****764566.********96332455677777778999986666444443322.224578********9999**** PP

       Ank_2   71 lLlekgadinlkd 83  
                  lLl  gad++l d
  KOO23588.1 2039 LLLHAGADPTLVD 2051
                  ***88***99865 PP

>> Ank_5  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.8   0.1    0.0089        18      12      36 ..    1784    1812 ..    1775    1816 .. 0.80
   2 !   19.5   0.0   4.4e-07   0.00089       7      52 ..    1816    1861 ..    1813    1865 .. 0.94
   3 ?    4.3   0.0     0.026        52      20      56 .]    1944    1979 ..    1935    1979 .. 0.94
   4 !   15.6   0.0   7.3e-06     0.015      18      55 ..    2023    2060 ..    2002    2061 .. 0.92

  Alignments for each domain:
  == domain 1  score: 5.8 bits;  conditional E-value: 0.0089
       Ank_5   12 ldgggn....tpLhvAakygaadvvrlLl 36  
                  +++gg+    ++LhvAa y +  vv++Ll
  KOO23588.1 1784 SEKGGVhgdhSALHVAAAYKHEAVVKMLL 1812
                  55666666669*****************9 PP

  == domain 2  score: 19.5 bits;  conditional E-value: 4.4e-07
       Ank_5    7 advnrldgggntpLhvAakygaadvvrlLlargadlnltdsrGlta 52  
                  a+vn +  +g++pLh+Aa  g+  +++lL++++ad+ + d +G+ta
  KOO23588.1 1816 AQVNKPTSDGMLPLHFAAVSGSVGIIELLIEHRADPIAADCHGRTA 1861
                  789****************************************998 PP

  == domain 3  score: 4.3 bits;  conditional E-value: 0.026
       Ank_5   20 LhvAakygaadvvrlLlargadlnltdsrGltaldlA 56  
                  L +Aa +g  + vr Ll ++ad+n    +G tal++A
  KOO23588.1 1944 LVLAAARGQDQDVRSLLRERADPNSFSPDG-TALQHA 1979
                  6799*************************8.999987 PP

  == domain 4  score: 15.6 bits;  conditional E-value: 7.3e-06
       Ank_5   18 tpLhvAakygaadvvrlLlargadlnltdsrGltaldl 55  
                  t+Lh+A++++ ++ + lLl  gad++l ds+Gl++++l
  KOO23588.1 2023 TALHLASRAVFPEAIGLLLHAGADPTLVDSDGLLPIEL 2060
                  9**********************************997 PP

>> Ank  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.0       6.7   1.3e+04       4      22 ..    1588    1611 ..    1588    1618 .. 0.68
   2 !   11.9   0.1   0.00012      0.23       4      29 ..    1794    1820 ..    1792    1823 .. 0.81
   3 !   19.7   0.0   4.2e-07   0.00084       1      31 [.    1824    1855 ..    1824    1856 .. 0.87
   4 ?   -2.9   0.0       5.7   1.1e+04      10      28 ..    1948    1967 ..    1944    1968 .. 0.70
   5 ?   -0.1   0.1      0.76   1.5e+03       4      29 ..    1974    2010 ..    1974    2011 .. 0.66
   6 !   15.6   0.1   8.3e-06     0.017       4      31 ..    2023    2051 ..    2022    2052 .. 0.83

  Alignments for each domain:
  == domain 1  score: -3.1 bits;  conditional E-value: 6.7
                  BHHH.HHH.......HHTTHHHHHHHH CS
         Ank    4 TPLH.lAa.......tngkkriiklLL 22  
                  T+L+ +A+       +++    +k+LL
  KOO23588.1 1588 TALMlRASspieinvSYA---LLKDLL 1611
                  999955665666666666...777777 PP

  == domain 2  score: 11.9 bits;  conditional E-value: 0.00012
                  BHHHHHHHHTTHHHHHHHHTT..TSTTC CS
         Ank    4 TPLHlAatngkkriiklLLhG..Anlna 29  
                  ++LH+Aa ++++ ++k+LL +  A +n 
  KOO23588.1 1794 SALHVAAAYKHEAVVKMLL-RvkAQVNK 1820
                  89*****9***********.43477775 PP

  == domain 3  score: 19.7 bits;  conditional E-value: 4.2e-07
                  TSBBHHHHHHHHTTHHHHHHHH.TTTSTTCBT CS
         Ank    1 dGnTPLHlAatngkkriiklLL.hGAnlnald 31  
                  dG+ PLH Aa  g++ ii+lL+ h+A++ a d
  KOO23588.1 1824 DGMLPLHFAAVSGSVGIIELLIeHRADPIAAD 1855
                  8999****99566666************9988 PP

  == domain 4  score: -2.9 bits;  conditional E-value: 5.7
                  HHHTTHHHHHHHH.TTTSTT CS
         Ank   10 atngkkriiklLL.hGAnln 28  
                  a +g+ + ++ LL  +A++n
  KOO23588.1 1948 AARGQDQDVRSLLrERADPN 1967
                  5456666678899678**99 PP

  == domain 5  score: -0.1 bits;  conditional E-value: 0.76
                  BHHHHHH.......HHTT.....HHHHHHHH.TTTSTTC CS
         Ank    4 TPLHlAa.......tngk.....kriiklLL.hGAnlna 29  
                  T+L  A+       +        + +++lL+  +A+++a
  KOO23588.1 1974 TALQHACraaivskS--RsrrpfLLCAELLIaARASVDA 2010
                  777777755565441..1445558899999977999988 PP

  == domain 6  score: 15.6 bits;  conditional E-value: 8.3e-06
                  BHHHHHHHHTT.HHHHHHHHT.TTSTTCBT CS
         Ank    4 TPLHlAatngk.kriiklLLh.GAnlnald 31  
                  T+LHlA++ +  ++ i lLLh GA+++++d
  KOO23588.1 2023 TALHLASR-AVfPEAIGLLLHaGADPTLVD 2051
                  *****994.44477******76*****999 PP

>> Chorein_N  N-terminal region of Chorein or VPS13
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.9   0.0   7.9e-13   1.6e-09      36     112 ..      74     151 ..      65     155 .. 0.86

  Alignments for each domain:
  == domain 1  score: 37.9 bits;  conditional E-value: 7.9e-13
   Chorein_N  36 LenlkLkkealdkl.elPfevkegvigklrlkipwsnlkskpvvieiedvyllaeprseseeedeekeekreqaakkk 112
                   +l L+++a     +lP e+  g+ig+++l++pw +l+s+p++++i+ vy +++   + e+++ e   kr+ aa ++
  KOO23588.1  74 FSDLFLRPDAEGLAdGLPCELAGGFIGSIELHVPWHDLMSQPITVKIDRVYFVLRGFAQPETYEPEMAAKRAAAALRA 151
                 56788888887775589*************************************999999999999888888777665 PP

>> Ank_4  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.7   0.1   1.4e-09   2.9e-06       3      55 .]    1794    1845 ..    1793    1865 .. 0.96
   2 ?    3.2   0.0     0.072   1.4e+02       8      44 ..    1947    1981 ..    1944    1986 .. 0.85
   3 ?    2.7   0.0       0.1   2.1e+02      16      55 .]    1997    2041 ..    1989    2041 .. 0.80
   4 ?   -1.1   0.0       1.6   3.3e+03      15      37 ..    2035    2056 ..    2022    2058 .. 0.64

  Alignments for each domain:
  == domain 1  score: 27.7 bits;  conditional E-value: 1.4e-09
       Ank_4    3 taLhyaaisgrlelvrlLlek.gadinaqdnrsGetalhiAakrgnveilklLl 55  
                  +aLh aa++ ++ +v+ Ll + +a++n+   ++G+ +lh+Aa  g+v i++lL+
  KOO23588.1 1794 SALHVAAAYKHEAVVKMLL-RvKAQVNKP-TSDGMLPLHFAAVSGSVGIIELLI 1845
                  79*****************.669*****9.999*******************98 PP

  == domain 2  score: 3.2 bits;  conditional E-value: 0.072
       Ank_4    8 aaisgrlelvrlLlekgadinaqdnrsGetalhiAak 44  
                  aa+ g+ + vr+Ll  +ad+n  +++   tal++A++
  KOO23588.1 1947 AAARGQDQDVRSLLRERADPNSFSPD--GTALQHACR 1981
                  6778888889****77*******777..8******97 PP

  == domain 3  score: 2.7 bits;  conditional E-value: 0.1
       Ank_4   16 lvrlLlekgadinaqdnrs......GetalhiAakrgnveilklLl 55  
                  +++lL++ +a+++a  +++        talh A +  ++e++ lLl
  KOO23588.1 1997 CAELLIAARASVDAL-PACsaeegpLKTALHLASRAVFPEAIGLLL 2041
                  688999********9.988555555559*****9887777777775 PP

  == domain 4  score: -1.1 bits;  conditional E-value: 1.6
       Ank_4   15 elvrlLlekgadinaqdnrsGet 37  
                  e++ lLl  gad+  + +++G+ 
  KOO23588.1 2035 EAIGLLLHAGADPTLV-DSDGLL 2056
                  4556777678888777.777765 PP

>> Ank_3  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.7   0.0   0.00016      0.32       4      30 ..    1794    1819 ..    1792    1820 .. 0.90
   2 !   16.1   0.0   5.9e-06     0.012       1      29 [.    1824    1851 ..    1824    1853 .. 0.93
   3 ?   -1.4   0.0       2.9   5.8e+03       6      30 ..    1944    1967 ..    1944    1968 .. 0.83
   4 ?   -1.9   0.1       4.1   8.2e+03       4      13 ..    1974    1983 ..    1973    1986 .. 0.88
   5 ?    5.7   0.1     0.015        29       4      29 ..    2023    2047 ..    2021    2049 .. 0.91

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.00016
       Ank_3    4 tpLhlAarsgnleivkfLlenkgadvn 30  
                  ++Lh+Aa + + ++vk+Ll+   a vn
  KOO23588.1 1794 SALHVAAAYKHEAVVKMLLR-VKAQVN 1819
                  89******************.687777 PP

  == domain 2  score: 16.1 bits;  conditional E-value: 5.9e-06
       Ank_3    1 nGetpLhlAarsgnleivkfLlenkgadv 29  
                  +G+ pLh+Aa sg++ i+++L+e + ad+
  KOO23588.1 1824 DGMLPLHFAAVSGSVGIIELLIE-HRADP 1851
                  6999*******************.89886 PP

  == domain 3  score: -1.4 bits;  conditional E-value: 2.9
       Ank_3    6 LhlAarsgnleivkfLlenkgadvn 30  
                  L lAa  g    v+ Ll+   ad+n
  KOO23588.1 1944 LVLAAARGQDQDVRSLLR-ERADPN 1967
                  568899999955******.799998 PP

  == domain 4  score: -1.9 bits;  conditional E-value: 4.1
       Ank_3    4 tpLhlAarsg 13  
                  t+L +A+r++
  KOO23588.1 1974 TALQHACRAA 1983
                  99*****985 PP

  == domain 5  score: 5.7 bits;  conditional E-value: 0.015
       Ank_3    4 tpLhlAarsgnleivkfLlenkgadv 29  
                  t+LhlA r+  +e + +Ll   gad+
  KOO23588.1 2023 TALHLASRAVFPEAIGLLLH-AGADP 2047
                  9************9999999.8*998 PP

>> V_ATPase_I  V-type ATPase 116kDa subunit family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.0      0.14   2.7e+02     682     717 ..     159     194 ..     131     195 .. 0.75
   2 ?    5.3   1.6     0.002       3.9      33     118 ..    1669    1753 ..    1662    1813 .. 0.78

  Alignments for each domain:
  == domain 1  score: -0.8 bits;  conditional E-value: 0.14
  V_ATPase_I 682 eeeeeeeeeeeeeefdfgevfihqvIhtIEfvLgci 717
                  e++++++   ++ + + + +i +v h IEfvL  +
  KOO23588.1 159 VEDQRQAAGGGKKGEGLIDKIISSVAHRIEFVLTNV 194
                 445555666778899999***************866 PP

  == domain 2  score: 5.3 bits;  conditional E-value: 0.002
  V_ATPase_I   33 demerklrfleeeieklekavikeeeaeesleapeekeldeleeelekleeelkelnenleklkkelnelvelkavlekakeflee 118 
                   em+r++  l +e+++++ ++ ++e++  ++e+++++   e+e +l+++e++l e++++ ++ +++  + + ++++++ ++ + ++
  KOO23588.1 1669 SEMSRRILALLQELHSTKLEMESAEQQPGQSEEQKRSVRLEYEGRLKQVESRLDEMRRSRRQ-RDKEDSYKSMRQIVHATEVVGSQ 1753
                  699***********9977777777776777777777777899**************999877.55666777788887766655443 PP

>> TolA_bind_tri  TolA binding protein trimerisation
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.5   0.1     0.019        38      39      55 ..     485     501 ..     484     504 .. 0.91
   2 ?    3.4   5.4     0.042        83      18      71 ..    1666    1719 ..    1659    1722 .. 0.92

  Alignments for each domain:
  == domain 1  score: 4.5 bits;  conditional E-value: 0.019
  TolA_bind_tri  39 GqiEelqyqleqleerQ 55 
                    G++Eelqy+l+q  +r 
     KOO23588.1 485 GELEELQYELDQSTKRA 501
                    99***********9996 PP

  == domain 2  score: 3.4 bits;  conditional E-value: 0.042
  TolA_bind_tri   18 qlllelqqqlealqqelreLRGqiEelqyqleqleerQrdlYldlDerlrklea 71  
                      +  e+ +++ al qel + + ++E  + q  q ee+ r   l+ + rl+++e+
     KOO23588.1 1666 PTASEMSRRILALLQELHSTKLEMESAEQQPGQSEEQKRSVRLEYEGRLKQVES 1719
                     67789**********************************************997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (2237 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       602  (0.0335769); expected 358.6 (0.02)
Passed bias filter:                      329  (0.0183502); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 1.11u 0.29s 00:00:01.40 Elapsed: 00:00:00.51
# Mc/sec: 13322.33
//
Query:       KOO23589.1  [L=191]
Description: chloroplast light harvesting protein isoform 8 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
  ------ inclusion threshold ------
      0.024   14.9   2.6      0.037   14.3   2.6    1.3  1  TetR_C_11        Tetracyclin repressor-like, C-terminal domai
      0.025   14.5  18.3         66    3.5  18.3    2.8  1  STI1             STI1 domain
      0.043   13.8  14.6      0.043   13.8  11.5    2.2  2  GerD             Spore germination GerD central core domain
       0.11   12.9   0.6       0.18   12.1   0.6    1.3  1  Cytochrome_P460  Cytochrome P460


Domain annotation for each model (and alignments):
>> TetR_C_11  Tetracyclin repressor-like, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   2.6   8.3e-06     0.037      17      86 ..      76     139 ..      68     152 .. 0.79

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 8.3e-06
   TetR_C_11  17 alaealaspragallrallaeaqrdpelaealrerllepr.raalravlrrAvarGelradadvelvldll 86 
                 +la a+ +p   a+++  +a++ rdpe+ +a+ e + +p+ +++++a +++ +a G l+  a    v +++
  KOO23589.1  76 NLAGAMKDP---AAMAE-MAQMMRDPEAMRAVKEMMADPQfQEQAKAAMAQMQASGRLPDMAH---VQEMM 139
                 556666666...66666.68888***********99***9999***************97554...44444 PP

>> STI1  STI1 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.5  18.3     0.015        66       5      49 ..      90     147 ..      75     153 .. 0.64

  Alignments for each domain:
  == domain 1  score: 3.5 bits;  conditional E-value: 0.015
        STI1   5 faklaanPe....trellsDPefv....akleeiqsNP.....qalqqymsDprimtv 49 
                 +a+++ +Pe    ++e+++DP+f+    a + ++q+       + +q++m+Dp +m++
  KOO23589.1  90 MAQMMRDPEamraVKEMMADPQFQeqakAAMAQMQASGrlpdmAHVQEMMKDPAVMQK 147
                 4566666654444556666666653333466666663347666677888888888887 PP

>> GerD  Spore germination GerD central core domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.0       2.2     1e+04      88      93 ..      36      41 ..      29      47 .. 0.47
   2 ?   13.8  11.5   9.6e-06     0.043      28      98 ..      80     140 ..      71     157 .. 0.52

  Alignments for each domain:
  == domain 1  score: -3.5 bits;  conditional E-value: 2.2
        GerD 88 qlekvi 93
                ++e+ +
  KOO23589.1 36 HMEESM 41
                222222 PP

  == domain 2  score: 13.8 bits;  conditional E-value: 9.6e-06
        GerD  28 lfkdpkfaealaksmkk.enekllkdLmkDpeYqkmlleilkdpemekqllellkskeyrkqlekviqetle 98 
                 ++kdp  ++++a+ m++ e  + +k++m Dp++q++    + + + +  l ++ + +e+            +
  KOO23589.1  80 AMKDPAAMAEMAQMMRDpEAMRAVKEMMADPQFQEQAKAAMAQMQASGRLPDMAHVQEMM-----------K 140
                 556666666666666542445556666666666665555555555444444444433333...........3 PP

>> Cytochrome_P460  Cytochrome P460
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.6   4.1e-05      0.18      12      88 ..      80     159 ..      75     171 .. 0.85

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 4.1e-05
  Cytochrome_P460  12 tsvedednkeireiyanpkaveayrkgge...fpdGtvlvkelykakkskeasgalvegelkgvevmvKdskrfaatg.gW 88 
                      ++ +++++ e+++++ +p+a++a+++      f + ++ ++ +++a+ +   + a+v++ +k+ +vm+K ++  +a + gW
       KOO23589.1  80 AMKDPAAMAEMAQMMRDPEAMRAVKEMMAdpqFQEQAKAAMAQMQASGRL-PDMAHVQEMMKDPAVMQKAKAMAEAMNfGW 159
                      566777889*****************987899***999999999988877.459***************999666655677 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (191 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1189  (0.0663171); expected 358.6 (0.02)
Passed bias filter:                      579  (0.032294); expected 358.6 (0.02)
Passed Vit filter:                        63  (0.00351386); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.46u 0.27s 00:00:00.73 Elapsed: 00:00:00.44
# Mc/sec: 1316.31
//
Query:       KOO23590.1  [L=189]
Description: hypothetical protein Ctob_002752 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (189 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       225  (0.0125495); expected 358.6 (0.02)
Passed bias filter:                      212  (0.0118244); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.26s 00:00:00.62 Elapsed: 00:00:00.39
# Mc/sec: 1439.83
//
Query:       KOO23591.1  [L=172]
Description: hypothetical protein Ctob_002753 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.4e-10   41.2   0.0    1.8e-10   40.8   0.0    1.2  1  Peptidase_C97  PPPDE putative peptidase domain
  ------ inclusion threshold ------
       0.01   15.5   0.0      0.017   14.8   0.0    1.3  1  DUF4105        Domain of unknown function (DUF4105)


Domain annotation for each model (and alignments):
>> Peptidase_C97  PPPDE putative peptidase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.8   0.0   2.1e-14   1.8e-10      70     123 ..      45      99 ..      16     113 .. 0.86

  Alignments for each domain:
  == domain 1  score: 40.8 bits;  conditional E-value: 2.1e-14
                    S-SEEEEEEEE---HHHHHHHHHHHHT.T--GGG-BTTTB-HHHHHHHHHHHHHS CS
  Peptidase_C97  70 kpresieigeTevteeevraileelss.eytgdkYnLiskNCnhFtdelvdfLtg 123
                     p ++ + g T +t++e++a+++e+ + +yt+ +Y+++ +NCnhF+ +l+++L g
     KOO23591.1  45 PPLRTWNCGATRLTDTEIDALIGEMGAtDYTPAEYDFFLRNCNHFCYDLAERLAG 99 
                    45667799*****************9966***********************987 PP

>> DUF4105  Domain of unknown function (DUF4105)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.8   0.0   1.9e-06     0.017     104     149 ..      56     101 ..      51     114 .. 0.88

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 1.9e-06
     DUF4105 104 nltpeevrallahiwelknkpfdYyflteNCatrllelldaarpgl 149
                 +lt+ e++al+ ++     +p +Y+f+ +NC    ++l+++ +  +
  KOO23591.1  56 RLTDTEIDALIGEMGATDYTPAEYDFFLRNCNHFCYDLAERLAGPW 101
                 699*****************************99999999877655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (172 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       495  (0.0276089); expected 358.6 (0.02)
Passed bias filter:                      414  (0.0230911); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.38u 0.28s 00:00:00.66 Elapsed: 00:00:00.42
# Mc/sec: 1228.23
//
Query:       KOO23592.1  [L=126]
Description: hypothetical protein Ctob_002754 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.1e-09   38.7   0.0    1.5e-09   38.4   0.0    1.1  1  NPL              Nucleoplasmin-like domain
    7.9e-08   32.4   0.1    1.5e-07   31.5   0.1    1.4  1  Myb_DNA-binding  Myb-like DNA-binding domain
  ------ inclusion threshold ------
       0.08   13.2   0.0       0.12   12.6   0.0    1.3  1  Myb_DNA-bind_6   Myb-like DNA-binding domain


Domain annotation for each model (and alignments):
>> NPL  Nucleoplasmin-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.4   0.0   2.5e-13   1.5e-09       1      87 [.       6      84 ..       6      89 .. 0.81

  Alignments for each domain:
  == domain 1  score: 38.4 bits;  conditional E-value: 2.5e-13
                EEEEEE-STT.EEEE-TTSS...EEEEEEEE-TT....-BT-EEEEEEEEGGGT..........EEEEEEEEEBTTBSEE---EEEESS-E CS
         NPL  1 fyGlevppgk.pvtlavpad...lritmaaldpsaekekekgrvtlkvkvekkkekekeeeeeleefvlctLdpeknyqqpldltfsegee 87
                f+G+ v+pgk p tl+  ++   + i +aal p+    k +g+++l+v+v+           + ++fvlc+L+p+++ q++ld    ++e+
  KOO23592.1  6 FWGCVVKPGKtPTTLKRAQEfasVIIKQAALAPE---GKPEGTSVLSVSVGAT---------SEDKFVLCHLTPGSCDQWALDAWSAKEEK 84
                9*********55555533323459*********5...4778999999999987.........4579*****************88777776 PP

>> Myb_DNA-binding  Myb-like DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.5   0.1   2.5e-11   1.5e-07       3      44 ..      77     123 ..      76     125 .. 0.89

  Alignments for each domain:
  == domain 1  score: 31.5 bits;  conditional E-value: 2.5e-11
                      SSBHHHHHHHHHHHHHHT....TCHHHHHHHHT.SS-HHHHHHHHHH CS
  Myb_DNA-binding   3 kWteeEdelLleavkkhG....nrWkkIaerlg.gRtekqcrsrwrn 44 
                      +W++ E++ L++ ++k+     nrW+++a+ +g g+t+ +c+ + + 
       KOO23592.1  77 AWSAKEEKALADSLAKLKegtpNRWERVAQDVGgGKTPSACKKHAKE 123
                      7***************65547788*********99*******99765 PP

>> Myb_DNA-bind_6  Myb-like DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   2.1e-05      0.12       1      37 [.      78     119 ..      78     124 .. 0.82

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 2.1e-05
  Myb_DNA-bind_6   1 WteeEdeiL....lklvekygndWknIaealn.rRtpkqcfd 37 
                     W++ E+++L    +kl e   n W+ +a+  +  +tp++c+ 
      KOO23592.1  78 WSAKEEKALadslAKLKEGTPNRWERVAQDVGgGKTPSACKK 119
                     9********6665666666678*********559******86 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (126 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       447  (0.0249317); expected 358.6 (0.02)
Passed bias filter:                      358  (0.0199677); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.37u 0.25s 00:00:00.62 Elapsed: 00:00:00.41
# Mc/sec: 933.26
//
Query:       KOO23593.1  [L=229]
Description: hypothetical protein Ctob_002755 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.5e-12   46.3   0.1    3.5e-12   46.3   0.1    2.1  2  DnaJ      DnaJ domain
  ------ inclusion threshold ------
       0.45   10.8   4.3       0.82   10.0   4.3    1.4  1  DUF5082   Domain of unknown function (DUF5082)


Domain annotation for each model (and alignments):
>> DnaJ  DnaJ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.3   0.1   3.9e-16   3.5e-12       1      62 [.      14      78 ..      14      78 .. 0.91
   2 ?   -1.1   0.6      0.25   2.2e+03      38      59 ..     130     151 ..     123     160 .. 0.58

  Alignments for each domain:
  == domain 1  score: 46.3 bits;  conditional E-value: 3.9e-16
                HHHHHHTSSTTG-....HHHHHHHHHHHHHHHSTTTSCCHHHHHHHHHHHHHHHHHHTSHHHHHHH CS
        DnaJ  1 dyYeiLgvskdas....edeIkkaYrklalkyHPDknpkdpeaeekFkeineAyevLsdpekRkqY 62
                d++++L++++ a     ++ +++a+rk +l +HPDk+ +dp+a+++F  ++eAy vL d++ R++Y
  KOO23593.1 14 DHWKVLKLKPAALkeggKAAVTAAFRKASLHVHPDKS-DDPRAADAFVILHEAYRVLADDKLRAAY 78
                7899****999863444666*****************.**************************99 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 0.25
                 HHHHHHHHHHHHHHHHTSHHHH CS
        DnaJ  38 eaeekFkeineAyevLsdpekR 59 
                 +a++   ++ eA + L+ +++R
  KOO23593.1 130 QARKDISRLREAEDRLKLAQRR 151
                 5555666666666666555554 PP

>> DUF5082  Domain of unknown function (DUF5082)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   4.3   9.2e-05      0.82       9      52 ..     118     161 ..     111     171 .. 0.86

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 9.2e-05
     DUF5082   9 qaqiaelrseiaaleekIerLkeaktklsdekeslkqkkkklek 52 
                 +++i e++  +a+  ++I+rL+ea ++l+ ++ +l+++k+  +k
  KOO23593.1 118 EEAIFEKERAAAQARKDISRLREAEDRLKLAQRRLEDAKRRKAK 161
                 56677888999999**********************99987655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (229 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1520  (0.0847788); expected 358.6 (0.02)
Passed bias filter:                      475  (0.0264934); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.43u 0.27s 00:00:00.70 Elapsed: 00:00:00.40
# Mc/sec: 1730.60
//
Query:       KOO23594.1  [L=812]
Description: dipeptidyl peptidase 3 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
   9.9e-203  674.5   0.0   1.2e-201  670.9   0.0    1.9  1  Peptidase_M49  Peptidase family M49


Domain annotation for each model (and alignments):
>> Peptidase_M49  Peptidase family M49
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  670.9   0.0  6.8e-206  1.2e-201       1     550 [.     178     791 ..     178     792 .. 0.97

  Alignments for each domain:
  == domain 1  score: 670.9 bits;  conditional E-value: 6.8e-206
                    HHHHHHTTTT---TTTTBBS-GGGT-B-TTEEES.--HHHHHHHHHTHHHHT---TTEEEEEEETTEEEEEEE-S..................... CS
  Peptidase_M49   1 lyekvkeaiyslepkkllLglpskghvstYYssnaitkeeieavqkllekkkiepentrvvktsekeyeilvASa..................... 75 
                    l++++  ++ysl p++++Lgl +++ +stY+s n +  ++++   ++l++ +++p+ntr++k  ++ y++l+ASa                     
     KOO23594.1 178 LWRRCVVRMYSLPPRQRQLGLGRANGISTYFSAN-CEAADADLAGRFLTSIGLSPYNTRLFK-GDDGYTVLLASAeeqaavagilaearsagldas 271
                    699999****************************.***************************.5666***************************** PP

                    ......................................---TTTS--SEEE-T.TS-EEEEEEEETHHHHHHHHHHHHHHHTT-SSHHHHHHHHHH CS
  Peptidase_M49  76 ......................................keekeeepeekekeelegkkvkleyGdyseelkkiveelekAkkyaanetqkkmlekY 133
                                                          ++e+++      ++++eg+++++++Gdy++ ++++v  le+A  +aa++tq++mle+Y
     KOO23594.1 272 kavpawlanldlpasmaaafgavavdisdgeaagagagEAEARALDGLCRAHSFEGHTIRVRRGDYAPIMARVVGWLEAAIPHAADQTQAAMLEAY 367
                    **********************************999766667777788999******************************************** PP

                    HHHHHH--HHHHHHHHHHHHTS-S-SEEEEEEEEE-SSSTTS-S-EEEEEEEE--HHHHHHHHHHHHTHHHHHHHSSS-GGGS-SS-------EEE CS
  Peptidase_M49 134 iesFetGsleahkesqrlWvkDkgPvvEtniGFietYrdPagvrgefegfvaivnkersakfekLvekaeklikkLPwakefEkdkflkPdFtsle 229
                    ++sF++Gs+eahk+++r+W++DkgP+vE++iGFie+YrdP+g rge+egfva+vn+e s+kf++Lv+ ae+++k++Pw+++fEkd+fl+PdFtsle
     KOO23594.1 368 ATSFREGSIEAHKRGSRHWIRDKGPAVESYIGFIESYRDPSGSRGEWEGFVACVNREVSRKFQTLVDGAEEMLKLMPWPRAFEKDQFLRPDFTSLE 463
                    ************************************************************************************************ PP

                    EEEEESS---SEEEE---HHHHHHT--EEEEEHHHHHHHHH..--S-TTB-TTTHHHHHHHHHHHHHHHHHHHHHHHHH-----BEETTE.ESS-S CS
  Peptidase_M49 230 vltfagsgipaGinipnyddirqneGFKNvslgnvlsakak..kekitfiseedqelykklkeeafevqvglHELlGHGsGkLlqetedgklnfdk 323
                    vl+f +sg+paGinipnyddirq+eGFKNvslgnvl+a+    +++++f++e+dq+l+k lk eafevqvg+HELlGHGsGkL + ++++      
     KOO23594.1 464 VLSFGSSGVPAGINIPNYDDIRQSEGFKNVSLGNVLQASYGagEKPVSFVAEADQALFKALKGEAFEVQVGIHELLGHGSGKLYHANTADAATLH- 558
                    ***************************************9654666**************************************99999987765. PP

                    SS--B-TTSSB--.--B-TT--HHHHHGGGHHHHHHHHHHHHHHHHTT-HHHHHHTT--S.....HHHHHHHHHHHHHHHHHHHHHGGGGB-TTT- CS
  Peptidase_M49 324 envpnpltgkpit.swYkpgetwdsvfgelassyeECRAelvalyLvlekevleifgyee.....keeaedviyvnylsmaragllalefydpesk 413
                      +p+pltg+pi+  +Y  g twds fg+las+yeECRAe+ ++yL+le++vl+ifg+ +       + +d++y+n+l m+ragl++lefy+pe++
     KOO23594.1 559 -GTPHPLTGEPISgPFYAAGATWDSTFGRLASAYEECRAECAGIYLCLEPSVLTIFGHADapaseVAQVHDITYINWLLMVRAGLTGLEFYTPETR 653
                    .6889*******636********************************************99987667889************************** PP

                    -BS-HHHHHHHHHHHHHHHSSSTTSEEEEE-TTS.S..-EEEEE-GGGTTTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHT---HHHHTTHHH CS
  Peptidase_M49 414 kwgqaHmqArfailkvlleagekglvkleetkdedg..dltvkldrskietvgkeaigkfLlkLqvykstadveagkklyeelsevdeeflklrdi 507
                    +w+qaHm+Arfail+vlleage glv+l++t+ +dg  d+t +++r+ i+tvgkeai+kfLl Lqv ks +d + g++l+e++s v++e++++r i
     KOO23594.1 654 EWRQAHMRARFAILRVLLEAGE-GLVTLTRTTGADGrpDVTATIERALIKTVGKEAIRKFLLALQVHKSLGDLAGGTALFEKYSLVSDELMAIRTI 748
                    ******************9998.*********999999********************************************************** PP

                    HHHT-----EEE--EEEE-TTS-EEEE---SSHHHHHHHHHHH CS
  Peptidase_M49 508 vlakkkprkvfvqantvleedgkvelkeyeetlegviqSfver 550
                    v+a+k+prk++vq+  +   dg++ +k++e+t++g+i+Sfv r
     KOO23594.1 749 VMARKEPRKLLVQPVLTAALDGSIGIKQFEPTPAGMIESFVAR 791
                    *****************************************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (812 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       481  (0.026828); expected 358.6 (0.02)
Passed bias filter:                      410  (0.022868); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.64u 0.28s 00:00:00.92 Elapsed: 00:00:00.44
# Mc/sec: 5592.04
//
Query:       KOO23595.1  [L=253]
Description: hypothetical protein Ctob_002757 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    5.9e-11   42.9   0.0    1.2e-10   41.9   0.0    1.5  1  Methyltransf_11  Methyltransferase domain
    1.9e-06   28.4   0.0    5.3e-06   27.0   0.0    1.7  2  Methyltransf_25  Methyltransferase domain
    8.1e-06   25.7   0.0    1.1e-05   25.3   0.0    1.2  1  Methyltransf_31  Methyltransferase domain
    4.6e-05   22.9   0.0    6.4e-05   22.4   0.0    1.1  1  Ubie_methyltran  ubiE/COQ5 methyltransferase family
     0.0028   18.4   0.0      0.005   17.6   0.0    1.4  1  Methyltransf_12  Methyltransferase domain
  ------ inclusion threshold ------
      0.025   14.4   0.0      0.036   13.9   0.0    1.4  1  Methyltransf_23  Methyltransferase domain
      0.028   14.3   0.0      0.036   13.9   0.0    1.2  1  Methyltransf_8   Hypothetical methyltransferase


Domain annotation for each model (and alignments):
>> Methyltransf_11  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.9   0.0   4.8e-14   1.2e-10      44      95 ..     132     186 ..     118     187 .. 0.88

  Alignments for each domain:
  == domain 1  score: 41.9 bits;  conditional E-value: 4.8e-14
                      EEEETTEECCC...TSS-TT-EEEEEEES-CCC-CCHHHHHHHHHHHEEEEEEEE CS
  Methyltransf_11  44 kvefvvadaek...lpfednsfDlvvssevlhhvedpekalkeiaRvLkpgGllv 95 
                      k e+ v+d+ +   lp++d+sfD+v+ s +++ + +p ++++e+aRvLkpgGl +
       KOO23595.1 132 KTEWAVQDLNQkptLPYADASFDVVTNSLSVDCLTKPLEVFAEMARVLKPGGLAC 186
                      467899999966769*************************************975 PP

>> Methyltransf_25  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   0.0       6.5   1.7e+04      64      86 ..      16      38 ..       8      41 .. 0.61
   2 !   27.0   0.0   2.1e-09   5.3e-06      47      97 .]     132     183 ..     124     183 .. 0.85

  Alignments for each domain:
  == domain 1  score: -3.4 bits;  conditional E-value: 6.5
                     TEEEEEEESTGGGSSHHHHHHHH CS
  Methyltransf_25 64 sfDlvvssgalhhlsdedlekal 86
                        lvv+  ++ h +++ + +al
       KOO23595.1 16 AAALVVCGLNVPHAKPSAASRAL 38
                     45567774337776666666655 PP

  == domain 2  score: 27.0 bits;  conditional E-value: 2.1e-09
                      TEEEEESBCCG...BSSSTTTEEEEEEESTGGGSSHHHHHHHHHHHHHHEEEEE CS
  Methyltransf_25  47 nvefvqgdaed...lpfedgsfDlvvssgalhhlsdedlekalkeiarvLkpgG 97 
                      + e+ ++d+++   lp++d+sfD+v+ s ++ +l+++   ++++e+arvLkpgG
       KOO23595.1 132 KTEWAVQDLNQkptLPYADASFDVVTNSLSVDCLTKP--LEVFAEMARVLKPGG 183
                      7899999996656699***********9889999854..58************9 PP

>> Methyltransf_31  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.3   0.0   4.3e-09   1.1e-05      59     110 ..     136     188 ..     129     228 .. 0.90

  Alignments for each domain:
  == domain 1  score: 25.3 bits;  conditional E-value: 4.3e-09
  Methyltransf_31  59 eqgdieelekl.ledekfDlilsnevlnaladpdkileeiervlkpggillie 110
                       ++d +++++l ++d++fD+++    +++l+ p +++ e+ rvlkpgg  +++
       KOO23595.1 136 AVQDLNQKPTLpYADASFDVVTNSLSVDCLTKPLEVFAEMARVLKPGGLACMA 188
                      6789999****************9999*********************98886 PP

>> Ubie_methyltran  ubiE/COQ5 methyltransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.4   0.0   2.5e-08   6.4e-05     109     156 ..     145     191 ..     131     210 .. 0.88

  Alignments for each domain:
  == domain 1  score: 22.4 bits;  conditional E-value: 2.5e-08
                      T-TTS-T-EEEEEEES-GGG-S-HHHHHHHHHHHEEEEEEEEEEEE-- CS
  Ubie_methyltran 109 eLpfeddsfDvvtvsfGlrnvtDklkaLkeayrvlkpGGrlvvlefsk 156
                       Lp+ d sfDvvt s  +  +t  l+++ e+ rvlkpGG l ++ f++
       KOO23595.1 145 TLPYADASFDVVTNSLSVDCLTKPLEVFAEMARVLKPGG-LACMAFTN 191
                      69************************************9.56777765 PP

>> Methyltransf_12  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.6   0.0   1.9e-06     0.005      53      98 ..     135     184 ..     122     185 .. 0.79

  Alignments for each domain:
  == domain 1  score: 17.6 bits;  conditional E-value: 1.9e-06
  Methyltransf_12  53 lealdlldldgg.....ssfDlvvasnvlhhlkdirevldnirklLkpgGr 98 
                      + ++dl ++++      +sfD+v+ s  + +l ++ ev+++++++LkpgG 
       KOO23595.1 135 WAVQDL-NQKPTlpyadASFDVVTNSLSVDCLTKPLEVFAEMARVLKPGGL 184
                      444443.23333577889********************************6 PP

>> Methyltransf_23  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.0   1.4e-05     0.036      75     132 ..     145     208 ..      72     233 .. 0.68

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 1.4e-05
  Methyltransf_23  75 eaaepqgkfdlIvlrevlehvpdppellrqiatllkpgGylllseplasl.......kedrllld 132
                        ++ +++fd+++++ +   +  p e+++ +a+ lkpgG++    +++++        ++r + +
       KOO23595.1 145 TLPYADASFDVVTNSLSVDCLTKPLEVFAEMARVLKPGGLACM-AFTNRCfptkvvpIWNRPFTE 208
                      2344666********************************9944.444556344444224444443 PP

>> Methyltransf_8  Hypothetical methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.0   1.4e-05     0.036     115     160 ..     145     191 ..     124     219 .. 0.81

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 1.4e-05
                     S-S--TT-EEEEEEES---S.S-HHHHHHHHHHHEEEEEEEEEEEEG CS
  Methyltransf_8 115 kvPledesvdvavfclslmg.tnladflkeanrvlkvGGllkvaevk 160
                      +P +d s dv+   ls+   t+  +   e+ rvlk+GGl  +a  +
      KOO23595.1 145 TLPYADASFDVVTNSLSVDClTKPLEVFAEMARVLKPGGLACMAFTN 191
                     589*************985325556667899*********9888655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (253 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       305  (0.0170115); expected 358.6 (0.02)
Passed bias filter:                      298  (0.0166211); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.43u 0.26s 00:00:00.69 Elapsed: 00:00:00.43
# Mc/sec: 1781.12
//
Query:       KOO23596.1  [L=702]
Description: hypothetical protein Ctob_002749 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.5e-07   29.2   0.0    4.4e-06   26.3   0.0    2.0  1  SHR-BD    SHR-binding domain of vacuolar-sorting associated p
  ------ inclusion threshold ------
      0.041   13.5   0.0      0.073   12.7   0.0    1.4  1  PikAIV_N  Narbonolide/10-deoxymethynolide synthase PikA4 N-te


Domain annotation for each model (and alignments):
>> SHR-BD  SHR-binding domain of vacuolar-sorting associated protein 13
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.3   0.0   4.9e-10   4.4e-06       2     237 ..     422     695 ..     421     701 .. 0.69

  Alignments for each domain:
  == domain 1  score: 26.3 bits;  conditional E-value: 4.9e-10
      SHR-BD   2 kisIyapywllNkTglpLevrqednsneaagqleeeeearsltpllfSfddr..dtknraqlrignsk....wskpfsldaigetnevelrsaekesev 94 
                 ++ ++ap wl Nk+  pL +  ++ ++   ++  +  ++    ++  +f+    +   +a+l   +s+     s  f++   g+++ ++++   +e  v
  KOO23596.1 422 ELRLFAPHWLYNKSSVPLALYGSSAKKP--VTTAD-AHSALPHYFTLAFEGAteKVGDKARLAYAKSDvigsQSGAFPINVTGSSTPLSVPVGHGEM-V 516
                 5789***************999666333..33331.234555566666666323444556666666668877888****************999985.8 PP

      SHR-BD  95 yiGisvee.grgkykltkiVtiaPRyilkNklsekleiaqrgskkv..............ielkpgeliplhwlrnkee.kelvirlpesnsqwSggfn 177
                  ++++ve+  +    ++++  +  R++++N +se+l  ++    k                 ++pg+ +    +rn  + + +++r+ + + +w  +f+
  KOO23596.1 517 EVSVTVERdSSVPVGMSNVTYVHDRFVVHNATSETLWWREAPPAKHrgnelgrrhafgaeLVVPPGAQTGALRFRNYDArRLMQVRFATREHEWCCAFS 615
                 899999862567788899999*******************98843345667788888887788888877666666655516666*************** PP

      SHR-BD 178 isdvgslyvklrrq......nseqvllkveiiledatifi.......kiedaekn.......ewPfsirNeseveilfyq 237
                   + g++ +k r +         +++l + +++e a +++       +++ a+++       + Pf+i Nes+  + f q
  KOO23596.1 616 PFQMGTFTLKFRPNldeelsYAIERYLVLHVTQERAQTVLyldepkgHFSGARAEhvdvlsrHLPFRIANESNMLLAFRQ 695
                 ***********995544555444566667777776666661122222222222211111111378888888888777777 PP

>> PikAIV_N  Narbonolide/10-deoxymethynolide synthase PikA4 N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   8.2e-06     0.073       2      16 ..     202     216 ..     201     217 .. 0.88

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 8.2e-06
    PikAIV_N   2 sdeklVeALRaSLkE 16 
                 s e++VeALR+S +E
  KOO23596.1 202 SGEEVVEALRSSFLE 216
                 5699********998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (702 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       675  (0.0376485); expected 358.6 (0.02)
Passed bias filter:                      302  (0.0168442); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.61u 0.29s 00:00:00.89 Elapsed: 00:00:00.45
# Mc/sec: 4640.23
//
Query:       KOO23597.1  [L=1017]
Description: ankyrin-1 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      2e-26   92.3   1.5    1.1e-09   38.7   0.0    3.7  3  Ank_2     Ankyrin repeats (3 copies)
    4.1e-23   81.2   0.8    7.8e-07   29.2   0.0    4.6  4  Ank_5     Ankyrin repeats (many copies)
    3.6e-19   68.9   2.5    0.00011   22.7   0.2    5.0  5  Ank_4     Ankyrin repeats (many copies)
    1.7e-18   64.8   2.4     0.0019   18.5   0.0    5.7  5  Ank_3     Ankyrin repeat
    1.7e-16   59.8  10.5    0.00043   20.6   0.0    6.1  6  Ank       Ankyrin repeat
    0.00038   20.3   0.0    0.00082   19.2   0.0    1.6  1  VPS13_C   Vacuolar-sorting-associated 13 protein C-terminal
  ------ inclusion threshold ------
       0.19   11.8   0.0       0.68   10.0   0.0    1.9  2  DUF413    Protein of unknown function, DUF


Domain annotation for each model (and alignments):
>> Ank_2  Ankyrin repeats (3 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.7   0.0   4.3e-13   1.1e-09       4      79 ..     177     264 ..     174     267 .. 0.83
   2 !   30.5   0.0   1.6e-10   4.1e-07      28      79 ..     306     364 ..     290     367 .. 0.83
   3 !   19.8   0.0   3.4e-07   0.00087      25      73 ..     399     452 ..     377     461 .. 0.79

  Alignments for each domain:
  == domain 1  score: 38.7 bits;  conditional E-value: 4.3e-13
       Ank_2   4 AakngnlelvklLl.egadpn..k..ngktaLhyAakngnleivklLleh...ad...ndgr..tpLhyAarsghleivklLlekgadi 79 
                 A  +g+ ++++lLl  ga p+  +  +g++ Lh+A+  ++  +++ L+e+   ++    dg+  tpLh+Aa +gh  +++lLl  gad+
  KOO23597.1 177 ALASGDMSTFNLLLsRGASPDsvShqTGQSSLHVACALQSAGVIEKLIEAradVNlktHDGWkqTPLHVAAPHGH-TCIRLLLGAGADP 264
                 555787789******99999977257*************9999*****9775633556566666***********.*******889997 PP

  == domain 2  score: 30.5 bits;  conditional E-value: 1.6e-10
       Ank_2  28 taLh.yAakngnleivklLle.h..ad...ndgrtpLhyAarsghleivklLlekgadi 79 
                 +aL+ +Aa +g++++vk+Ll  h   d    +g+++Lh A+  gh ++v++Lle  a++
  KOO23597.1 306 SALIvTAAAAGQIQTVKALLHsHthPDsfgPNGTSALHEACIRGHADLVRMLLEARAEP 364
                 677879999**9999*****534664455699*********************887776 PP

  == domain 3  score: 19.8 bits;  conditional E-value: 3.4e-07
       Ank_2  25 ngktaLhyAakngnleivklLleh......adndgrtpLhyAarsghleivklLl 73 
                  g+taLh+Aa++g+  ++klLl +       d++g+ pL+ +   ++ e+ +lLl
  KOO23597.1 399 VGMTALHFAASAGCAPVLKLLLRAkadpraRDEQGQLPLYSCPPASS-EARELLL 452
                 589***********999*****856566655599*****99976554.8888888 PP

>> Ank_5  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.1   0.0   5.5e-08   0.00014       2      56 .]     190     246 ..     189     246 .. 0.83
   2 !    8.9   0.1   0.00077         2      13      40 ..     236     262 ..     234     269 .. 0.79
   3 !   20.8   0.0   1.4e-07   0.00035       8      44 ..     330     366 ..     325     369 .. 0.83
   4 !   29.2   0.0   3.1e-10   7.8e-07      16      53 ..     400     437 ..     398     438 .. 0.97

  Alignments for each domain:
  == domain 1  score: 22.1 bits;  conditional E-value: 5.5e-08
       Ank_5   2 lehg.padvnrldgggntpLhvAakygaadvvrlLlargadlnltdsrG..ltaldlA 56 
                 l++g + d   + + g++ LhvA+  ++a v+++L++ +ad nl++ +G  +t+l++A
  KOO23597.1 190 LSRGaSPDS-VSHQTGQSSLHVACALQSAGVIEKLIEARADVNLKTHDGwkQTPLHVA 246
                 555644444.5678899**************************999999878999887 PP

  == domain 2  score: 8.9 bits;  conditional E-value: 0.00077
       Ank_5  13 dgggntpLhvAakygaadvvrlLlarga 40 
                 dg+++tpLhvAa +g+ +++rlLl  ga
  KOO23597.1 236 DGWKQTPLHVAAPHGH-TCIRLLLGAGA 262
                 78899*********99.46676665555 PP

  == domain 3  score: 20.8 bits;  conditional E-value: 1.4e-07
       Ank_5   8 dvnrldgggntpLhvAakygaadvvrlLlargadlnl 44 
                  ++   ++g+++Lh A+ +g+ad+vr+Ll+ +a ++l
  KOO23597.1 330 HPDSFGPNGTSALHEACIRGHADLVRMLLEARAEPGL 366
                 4566778899*******************88888776 PP

  == domain 4  score: 29.2 bits;  conditional E-value: 3.1e-10
       Ank_5  16 gntpLhvAakygaadvvrlLlargadlnltdsrGltal 53 
                 g+t+Lh+Aa++g+a+v++lLl   ad++++d++G+++l
  KOO23597.1 400 GMTALHFAASAGCAPVLKLLLRAKADPRARDEQGQLPL 437
                 89*********************************998 PP

>> Ank_4  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.6   0.0   0.00055       1.4       5      43 ..     174     212 ..     170     218 .. 0.88
   2 !   15.3   0.1   8.9e-06     0.023       4      47 ..     207     251 ..     204     258 .. 0.89
   3 ?   -2.1   0.0       2.6   6.6e+03      16      28 ..     253     265 ..     252     271 .. 0.84
   4 !   22.7   0.2   4.4e-08   0.00011       4      55 .]     308     358 ..     303     358 .. 0.88
   5 !   22.2   0.0   6.2e-08   0.00016       1      42 [.     400     440 ..     400     440 .. 0.96

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 0.00055
       Ank_4   5 LhyaaisgrlelvrlLlekgadinaqdnrs.GetalhiAa 43 
                 L  a +sg++ +  lLl++ga+++ + + + G++ lh A+
  KOO23597.1 174 LVDALASGDMSTFNLLLSRGASPDSV-SHQtGQSSLHVAC 212
                 667899********************.6666999*****9 PP

  == domain 2  score: 15.3 bits;  conditional E-value: 8.9e-06
       Ank_4   4 aLhyaaisgrlelvrlLlekgadinaqdnrsGe..talhiAakrgn 47 
                  Lh a++ +   +++ L+e +ad+n     +G+  t+lh Aa +g+
  KOO23597.1 207 SLHVACALQSAGVIEKLIEARADVNLK-THDGWkqTPLHVAAPHGH 251
                 69************************9.8888888*******9998 PP

  == domain 3  score: -2.1 bits;  conditional E-value: 2.6
       Ank_4  16 lvrlLlekgadin 28 
                 ++rlLl  gad+ 
  KOO23597.1 253 CIRLLLGAGADPL 265
                 699*******986 PP

  == domain 4  score: 22.7 bits;  conditional E-value: 4.4e-08
       Ank_4   4 aLhyaaisgrlelvrlLlekgadinaqdnrsGetalhiAakrgnveilklLl 55 
                 ++  aa++g++++v+ Ll +   ++     +G +alh A+ rg+ + +++Ll
  KOO23597.1 308 LIVTAAAAGQIQTVKALLHSHTHPDSF-GPNGTSALHEACIRGHADLVRMLL 358
                 5667889***********889999999.445********************8 PP

  == domain 5  score: 22.2 bits;  conditional E-value: 6.2e-08
       Ank_4   1 eltaLhyaaisgrlelvrlLlekgadinaqdnrsGetalhiA 42 
                 ++taLh aa++g+ ++++lLl  +ad+ a+ +++G+ +l+ +
  KOO23597.1 400 GMTALHFAASAGCAPVLKLLLRAKADPRAR-DEQGQLPLYSC 440
                 69*******************99*******.********975 PP

>> Ank_3  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.1   0.0   4.5e-05      0.12       2      30 ..     204     231 ..     203     232 .. 0.95
   2 !   12.1   0.0   9.3e-05      0.24       3      29 ..     240     264 ..     238     266 .. 0.93
   3 ?   -0.6   0.0       1.2   3.1e+03       7      23 ..     310     326 ..     305     332 .. 0.80
   4 !   15.5   0.0   7.3e-06     0.019       2      25 ..     338     360 ..     337     365 .. 0.85
   5 !   18.5   0.0   7.6e-07    0.0019       2      30 ..     400     427 ..     399     428 .. 0.94

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 4.5e-05
       Ank_3   2 GetpLhlAarsgnleivkfLlenkgadvn 30 
                 G++ Lh+A+  ++  +++ L+e   advn
  KOO23597.1 204 GQSSLHVACALQSAGVIEKLIE-ARADVN 231
                 99********************.8***99 PP

  == domain 2  score: 12.1 bits;  conditional E-value: 9.3e-05
       Ank_3   3 etpLhlAarsgnleivkfLlenkgadv 29 
                 +tpLh+Aa +g+++ +++Ll   gad+
  KOO23597.1 240 QTPLHVAAPHGHTC-IRLLLG-AGADP 264
                 8************9.******.8**98 PP

  == domain 3  score: -0.6 bits;  conditional E-value: 1.2
       Ank_3   7 hlAarsgnleivkfLle 23 
                  +Aa +g +  vk+Ll 
  KOO23597.1 310 VTAAAAGQIQTVKALLH 326
                 489******99****97 PP

  == domain 4  score: 15.5 bits;  conditional E-value: 7.3e-06
       Ank_3   2 GetpLhlAarsgnleivkfLlenk 25 
                 G ++Lh+A+  g+ ++v++Lle  
  KOO23597.1 338 GTSALHEACIRGHADLVRMLLE-A 360
                 5589*****************9.4 PP

  == domain 5  score: 18.5 bits;  conditional E-value: 7.6e-07
       Ank_3   2 GetpLhlAarsgnleivkfLlenkgadvn 30 
                 G+t+Lh+Aa++g+ +++k+Ll+   ad++
  KOO23597.1 400 GMTALHFAASAGCAPVLKLLLR-AKADPR 427
                 89********************.899987 PP

>> Ank  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.0       1.1   2.7e+03      19      30 ..     187     199 ..     178     200 .. 0.75
   2 !   10.3   0.0    0.0003      0.76       2      31 ..     204     234 ..     203     235 .. 0.86
   3 !   16.2   0.1   4.1e-06     0.011       3      27 ..     240     264 ..     239     269 .. 0.81
   4 ?   -0.4   0.1      0.73   1.9e+03      10      24 ..     313     327 ..     304     333 .. 0.70
   5 !   13.6   0.0   2.7e-05      0.07       1      27 [.     337     364 ..     337     368 .. 0.90
   6 !   20.6   0.0   1.7e-07   0.00043       2      31 ..     400     430 ..     400     431 .. 0.91

  Alignments for each domain:
  == domain 1  score: -0.9 bits;  conditional E-value: 1.1
                 HHHH.TTTSTTCB CS
         Ank  19 klLL.hGAnlnal 30 
                  lLL +GA+++++
  KOO23597.1 187 NLLLsRGASPDSV 199
                 6889779**9875 PP

  == domain 2  score: 10.3 bits;  conditional E-value: 0.0003
                 SBBHHHHHH...HHTTHHHHHHHH.TTTSTTCBT CS
         Ank   2 GnTPLHlAa...tngkkriiklLL.hGAnlnald 31 
                 G + LH+A+   + g   +i+ L+  +A++n+++
  KOO23597.1 204 GQSSLHVACalqSAG---VIEKLIeARADVNLKT 234
                 6777*****777777...******889****987 PP

  == domain 3  score: 16.2 bits;  conditional E-value: 4.1e-06
                 BBHHHHHHHHTTHHHHHHHH.TTTST CS
         Ank   3 nTPLHlAatngkkriiklLL.hGAnl 27 
                  TPLH+Aa + ++ +i+lLL  GA++
  KOO23597.1 240 QTPLHVAA-PHGHTCIRLLLgAGADP 264
                 5*******.55566******889*97 PP

  == domain 4  score: -0.4 bits;  conditional E-value: 0.73
                 HHHTTHHHHHHHHTT CS
         Ank  10 atngkkriiklLLhG 24 
                 a  g+ + +k+LLh+
  KOO23597.1 313 AAAGQIQTVKALLHS 327
                 4478899******64 PP

  == domain 5  score: 13.6 bits;  conditional E-value: 2.7e-05
                 TSBBHHHHHHHHTTHHHHHHHH.TTTST CS
         Ank   1 dGnTPLHlAatngkkriiklLL.hGAnl 27 
                 +G ++LH A+ +g+++ +++LL  +A++
  KOO23597.1 337 NGTSALHEACIRGHADLVRMLLeARAEP 364
                 799*******99**********778876 PP

  == domain 6  score: 20.6 bits;  conditional E-value: 1.7e-07
                 SBBHHHHHHHHTTHHHHHHHH.TTTSTTCBT CS
         Ank   2 GnTPLHlAatngkkriiklLL.hGAnlnald 31 
                 G+T+LH Aa+ g + ++klLL   A++ a+d
  KOO23597.1 400 GMTALHFAASAGCAPVLKLLLrAKADPRARD 430
                 9********99*9********5569**9998 PP

>> VPS13_C  Vacuolar-sorting-associated 13 protein C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.2   0.0   3.2e-07   0.00082       2     176 ..     603     780 ..     602     782 .. 0.80

  Alignments for each domain:
  == domain 1  score: 19.2 bits;  conditional E-value: 3.2e-07
     VPS13_C   2 iYfeklhlqPiklhlsfslsekknkeesleke.......qsllslllllnslgvtltniddapikLnalelenvflslesliekikkhYsqqllkqlyk 93 
                 +Y++  ++  ++l+++++ + ++ +  s+ +         + l+ l  l s  ++l+++d+ +i+L  +e+ + f +  +l++    hY   +lk l +
  KOO23597.1 603 LYLKRVKIDQVRLSITVQIKADALDRRSQLDGgeaaaldDEDLDELDHL-SAVASLASLDNWQIELPPFETLEFFSPPADLVQLAVAHYWLAALKALTN 700
                 7999****************99999998876699999996666666555.566899******************************************* PP

     VPS13_C  94 ilgsldvlGNPvglfnnissGvkdlfyePiqglvkgpeefgeglakGaksLvkktvfGvadsvskitgsvskglaaltmDeeY 176
                 +l  ++ lGN  +lf+ +  G + ++        ++  ++   la G + +   +   + + +s+  g+ s+ la lt D ++
  KOO23597.1 701 LL--ANKLGNVGKLFQAVEFGYSRFLARWE-REGSSLLKLPAALAAGLHGFSITIADWILSFLSTNLGTSSTALARLTRDPNF 780
                 *9..689***************99986532.2223345566666666666666666666667777777777777777766665 PP

>> DUF413  Protein of unknown function, DUF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   0.0   0.00027      0.68      13      63 ..      99     150 ..      96     171 .. 0.74
   2 ?   -3.1   0.0       3.3   8.4e+03      43      74 ..     578     609 ..     575     616 .. 0.83

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.00027
      DUF413  13 srsGdFtikeaelLeqyGkalkaLeegele.Peteeekqfvevvkgekaaet 63 
                  r G Ft + a+   + G+al+aL +g+ e ++te   q+v++   e+  + 
  KOO23597.1  99 DRGGSFTERAASSVGTLGDALNALLSGSKErAATERTLQLVRAKMAERVSTR 150
                 799************************9872455556666666555555444 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 3.3
      DUF413  43 PeteeekqfvevvkgekaaetelekvWlkYlk 74 
                 Pe++e +++v + +++++ ++ l+ ++lk +k
  KOO23597.1 578 PESAESTELVVAQRSKSRSKSGLNELYLKRVK 609
                 88889999999999999999999999998766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1017 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       586  (0.0326845); expected 358.6 (0.02)
Passed bias filter:                      372  (0.0207485); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.70u 0.27s 00:00:00.97 Elapsed: 00:00:00.44
# Mc/sec: 6929.46
//
Query:       KOO23598.1  [L=628]
Description: putative serine threonine-protein kinase abkc-like protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.4e-26   93.0   0.0    2.3e-26   92.3   0.0    1.4  1  ABC1         ABC1 family
  ------ inclusion threshold ------
      0.069   12.4   0.0        1.6    8.0   0.0    2.1  1  Pkinase_Tyr  Protein tyrosine kinase


Domain annotation for each model (and alignments):
>> ABC1  ABC1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   92.3   0.0   2.6e-30   2.3e-26       2     111 ..     208     321 ..     207     332 .. 0.90

  Alignments for each domain:
  == domain 1  score: 92.3 bits;  conditional E-value: 2.6e-30
        ABC1   2 elgkkleeiFaefdeePiAaASiaqVhrAklks.......geeVavKvqrpgvkkriksDlellkllakllkkflkelrldleelvdefskslleEldf 93 
                 ++g++l+++Fa f++eP+A++Si+qVh A+lk        g++VavKvq+p++++r+++D+++l  +a+l+ ++  ++r  ++e+v++f+++ +++ldf
  KOO23598.1 208 DFGCELSDLFATFEDEPMASGSIGQVHLATLKHahgrferGRKVAVKVQHPNLAERLTLDMAILMSAADLVGSV-AGVR--IHETVAQFASNFYMQLDF 303
                 6899****************************7677777778***************************77765.6777..9***************** PP

        ABC1  94 erEAknaekfrenfaklk 111
                 + EA+n  +f+ nf +  
  KOO23598.1 304 RDEAANLRRFQANFGSAF 321
                 **************8765 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.0   0.0   0.00018       1.6       5      46 ..     223     266 ..     220     452 .. 0.56

  Alignments for each domain:
  == domain 1  score: 8.0 bits;  conditional E-value: 0.00018
                  EEEEEESSEEEEEEEEET..TTTSSEEEEEEEEESTTSSHHHHH CS
  Pkinase_Tyr   5 kklGeGafGkVvegtlkg..ekekkevkVavKtlkeeateeeke 46 
                  + +++G+ G+V+ +tlk+   + ++  kVavK+ + +  e+ + 
   KOO23598.1 223 EPMASGSIGQVHLATLKHahGRFERGRKVAVKVQHPNLAERLTL 266
                  56789999999999999977677889999999998777666432 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (628 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       414  (0.0230911); expected 358.6 (0.02)
Passed bias filter:                      373  (0.0208043); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.59u 0.28s 00:00:00.87 Elapsed: 00:00:00.44
# Mc/sec: 4268.83
//
Query:       KOO23599.1  [L=185]
Description: nedd8-conjugating enzyme ubc12 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    8.5e-38  129.2   0.0      1e-37  128.9   0.0    1.1  1  UQ_con    Ubiquitin-conjugating enzyme
  ------ inclusion threshold ------
      0.019   14.8   0.0      0.029   14.2   0.0    1.3  1  UEV       UEV domain
      0.079   13.2   0.0        0.1   12.9   0.0    1.3  1  RWD       RWD domain


Domain annotation for each model (and alignments):
>> UQ_con  Ubiquitin-conjugating enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  128.9   0.0   1.7e-41     1e-37       1     138 [.      31     165 ..      31     167 .. 0.91

  Alignments for each domain:
  == domain 1  score: 128.9 bits;  conditional E-value: 1.7e-41
                 HHHHHHHHHHHSTTTTEEEEEEETTEECEEEEEEEB.TTSTTTTEEEEEEEE--TTTTTS--EEEESST-SCTTBETTSBB-CGGGSTTT--TTSHHHH CS
      UQ_con   1 rlqkelkelakkkpsgisaklvddenlfewkvlikgpedtpYeggvFklelefpedYPlkpPkvkfvtkifHPnvdksGevcldiLkeekWspaltles 99 
                 r+qk+++el+k+k   i+    +  +l+++kv i + +d++ +gg F++++++p++YP+++Pkv ++t +fHPn+d +G+vcl+iL+e+ W+p+lt++s
  KOO23599.1  31 RMQKDVSELKKEKGVEIDFYNGK-ADLMNFKVKISP-DDGFHAGGHFTFDVKVPNTYPHDAPKVLCETLVFHPNIDMEGHVCLNILRED-WKPVLTISS 126
                 78999999866555555544444.7*********98.**************************************************55.********* PP

                 HHHHHHHHHHS--TTS-SSHHHHHHHHHTHHHHHHHHHH CS
      UQ_con 100 vllsiqsLlaepnpesplnkeaakllkkdreeykkkvke 138
                 v++ +q L+ epn ++plnkeaa++l  +r+++ ++vk+
  KOO23599.1 127 VIMGLQFLMLEPNADDPLNKEAANMLAGNRRQFAETVKR 165
                 ************************************986 PP

>> UEV  UEV domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   0.0   4.8e-06     0.029      54     120 ..      79     143 ..      53     144 .. 0.81

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 4.8e-06
                 EE--TTTTTS--EEEE-GCC--TSGGGGGB-TTSBB--HHHHS.--T..TT--HHHHHHHHHH-----XX CS
         UEV  54 iwvlesyPveaPivyvkptksmvikknenvdaqGlvylpyLee.Wkr..eksnlvslvqelaqafeeesP 120
                 + v+++yP  aP v  +     +++ + n+d +G v l++L+e Wk+  + s++++ +q l+   +++ P
  KOO23599.1  79 VKVPNTYPHDAPKVLCE-----TLVFHPNIDMEGHVCLNILREdWKPvlTISSVIMGLQFLMLEPNADDP 143
                 679*********99876.....466688*************75398876667777777877777777777 PP

>> RWD  RWD domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   1.7e-05       0.1      33      76 ..      58      96 ..      32     132 .. 0.77

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 1.7e-05
                EEEEEECECCCC....TT-CEEEEEEEEE-SSTTSS--EEEEEE CS
                xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
         RWD 33 kikldededeedsefeekkkpslkleiklpeeYPeeaPiislss 76
                ++k++ ++d+ +         ++++++k+p++YP+ aP++  ++
  KOO23599.1 58 NFKVKISPDDGF-----HAGGHFTFDVKVPNTYPHDAPKVLCET 96
                455555555544.....4677899**************998776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (185 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       364  (0.0203023); expected 358.6 (0.02)
Passed bias filter:                      350  (0.0195214); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.39u 0.25s 00:00:00.64 Elapsed: 00:00:00.40
# Mc/sec: 1375.94
//
Query:       KOO23600.1  [L=187]
Description: hypothetical protein Ctob_002760 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (187 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       333  (0.0185733); expected 358.6 (0.02)
Passed bias filter:                      284  (0.0158403); expected 358.6 (0.02)
Passed Vit filter:                        11  (0.000613531); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.40u 0.25s 00:00:00.65 Elapsed: 00:00:00.40
# Mc/sec: 1394.86
//
Query:       KOO23601.1  [L=160]
Description: hypothetical protein Ctob_002762 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      0.003   17.3   0.9       0.65    9.7   0.2    2.1  2  DUF3287          Protein of unknown function (DUF3287)
      0.009   15.6   0.4      0.009   15.6   0.4    1.5  2  Paralemmin       Paralemmin
  ------ inclusion threshold ------
      0.011   15.4   5.2       0.02   14.6   0.9    2.4  2  DivIC            Septum formation initiator
      0.017   15.7  10.1      0.048   14.2  10.1    1.6  1  APG6_N           Apg6 coiled-coil region
      0.019   15.4   2.0      0.019   15.4   2.0    1.9  2  ZapB             Cell division protein ZapB
      0.019   15.2   0.6       0.54   10.6   0.4    2.2  2  Lzipper-MIP1     Leucine-zipper of ternary complex factor MIP
      0.046   13.9   2.6      0.051   13.8   1.8    1.4  1  CREPT            Cell-cycle alteration and expression-elevate
       0.05   13.8   1.7       0.05   13.8   1.7    2.0  2  TMF_TATA_bd      TATA element modulatory factor 1 TATA bindin
      0.051   13.9   5.2       0.99    9.8   1.2    2.3  2  CLZ              C-terminal leucine zipper domain of cyclic n
      0.057   13.7   1.9      0.057   13.7   1.9    1.9  2  DUF5082          Domain of unknown function (DUF5082)
      0.078   10.9   1.2        0.1   10.5   1.2    1.2  1  V_ATPase_I       V-type ATPase 116kDa subunit family
       0.17   12.1   5.7       0.18   12.1   1.7    2.2  2  ABC_tran_CTD     ABC transporter C-terminal domain
       0.19   11.1   0.8        0.2   11.0   0.8    1.1  1  NBP1             Fungal Nap binding protein NBP1
       0.37   10.1   7.8      0.098   12.0   3.3    1.9  2  GAS              Growth-arrest specific micro-tubule binding
       0.44    9.2   7.5       0.48    9.1   7.5    1.0  1  HAUS5            HAUS augmin-like complex subunit 5
        0.5   10.0  11.9       0.44   10.2  10.9    1.4  1  DUF2968          Protein of unknown function (DUF2968)
       0.57   10.2   6.6        1.2    9.1   2.4    2.2  2  Prefoldin_2      Prefoldin subunit
       0.84    9.5   6.3       0.71    9.8   4.3    1.7  2  Ax_dynein_light  Axonemal dynein light chain
        1.4    9.0  12.2       0.57   10.2   4.7    2.3  2  FlxA             FlxA-like protein


Domain annotation for each model (and alignments):
>> DUF3287  Protein of unknown function (DUF3287)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.3   0.1    0.0079       7.4      78     116 ..      18      55 ..      13      67 .. 0.82
   2 !    9.7   0.2   0.00069      0.65      67      99 ..      70     102 ..      62     107 .. 0.90

  Alignments for each domain:
  == domain 1  score: 6.3 bits;  conditional E-value: 0.0079
     DUF3287  78 rqtleaRiarveRklreleseprdWeeleldevariPds 116
                  q+ ea ia+ve ++r ++s   +  +++l e++++ + 
  KOO23601.1  18 QQQAEASIAQVEADVRLMDSF-ANAVRRDLTEQDKVKQG 55 
                 57889***********99985.56789999999998665 PP

  == domain 2  score: 9.7 bits;  conditional E-value: 0.00069
     DUF3287  67 lcderqklgkkrqtleaRiarveRklrelesep 99 
                 + der     k q le  +a ++R+++ le+e 
  KOO23601.1  70 AQDERDGCHSKTQHLEDEVATLQRQIKALEAEK 102
                 5799**************************985 PP

>> Paralemmin  Paralemmin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.1       2.4   2.3e+03      13      20 ..      20      27 ..       4      54 .. 0.51
   2 !   15.6   0.4   9.5e-06     0.009       9      52 ..      79     122 ..      65     138 .. 0.83

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 2.4
  Paralemmin 13 kLEesiqr 20
                + E si +
  KOO23601.1 20 QAEASIAQ 27
                12222222 PP

  == domain 2  score: 15.6 bits;  conditional E-value: 9.5e-06
  Paralemmin   9 akvrkLEesiqrLekeieeLeseesaisakeevlaeklketeks 52 
                  k+++LE+++  L+++i++Le+e+ a +a + +l+e+ k+   +
  KOO23601.1  79 SKTQHLEDEVATLQRQIKALEAEKMALAADKAMLTEANKKVLAQ 122
                 6999************************9999998887655444 PP

>> DivIC  Septum formation initiator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.5   0.2      0.14   1.3e+02      27      51 ..      12      36 ..       6      48 .. 0.79
   2 ?   14.6   0.9   2.1e-05      0.02      19      50 ..      81     112 ..      76     124 .. 0.73

  Alignments for each domain:
  == domain 1  score: 2.5 bits;  conditional E-value: 0.14
                HHHHHHHHHHHHHHHHHHHHHCC-X CS
       DivIC 27 aalqaelaklkaeneeLeaevkdLk 51
                a+  a+ ++  a +++ ea v+++ 
  KOO23601.1 12 ADADATQQQAEASIAQVEADVRLMD 36
                6777888899999999999999884 PP

  == domain 2  score: 14.6 bits;  conditional E-value: 2.1e-05
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC- CS
       DivIC  19 ykqlkqeiaalqaelaklkaeneeLeaevkdL 50 
                  + l+ e+a+lq+++++l ae+++L+a  + L
  KOO23601.1  81 TQHLEDEVATLQRQIKALEAEKMALAADKAML 112
                 56777888888888888888888887765555 PP

>> APG6_N  Apg6 coiled-coil region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2  10.1   5.1e-05     0.048      11      93 ..      18     118 ..      14     128 .. 0.72

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 5.1e-05
      APG6_N  11 leeldkqleqaekerdaYeeflkklkkekkeeek..................qdeeleeleeeleklekeeeelleeLkelekereeleaelaaleeel 91 
                  ++ +  ++q+e++ + + +f + ++++ +e++k                   ++e++  + + + le+e ++l++++k+le+e+ +l+a+ a l+e  
  KOO23601.1  18 QQQAEASIAQVEADVRLMDSFANAVRRDLTEQDKvkqgiihalgyfrrqeelAQDERDGCHSKTQHLEDEVATLQRQIKALEAEKMALAADKAMLTEAN 116
                 566777788888888888888888888866655577777777777765444445555666666888999999999999999999999988888888776 PP

      APG6_N  92 ea 93 
                 ++
  KOO23601.1 117 KK 118
                 65 PP

>> ZapB  Cell division protein ZapB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.1       2.1   1.9e+03      52      65 ..      43      59 ..      12      73 .. 0.50
   2 ?   15.4   2.0     2e-05     0.019      11      52 ..      79     120 ..      78     127 .. 0.88

  Alignments for each domain:
  == domain 1  score: -0.7 bits;  conditional E-value: 2.1
        ZapB 52 k...eereawqerlkkL 65
                +   +e+ ++++ +   
  KOO23601.1 43 RrdlTEQDKVKQGIIHA 59
                23445555555555554 PP

  == domain 2  score: 15.4 bits;  conditional E-value: 2e-05
        ZapB  11 skiqkaidtitlLqmeieeLkeeneelkeenreleeeneqlk 52 
                 sk q++ d++++Lq +i++L++e+ +l+  ++ l+e n++  
  KOO23601.1  79 SKTQHLEDEVATLQRQIKALEAEKMALAADKAMLTEANKKVL 120
                 68899999****************************999975 PP

>> Lzipper-MIP1  Leucine-zipper of ternary complex factor MIP1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.8   0.0      0.15   1.4e+02      54      84 .]      19      49 ..       2      49 .. 0.73
   2 ?   10.6   0.4   0.00057      0.54       3      38 ..      78     117 ..      77     135 .. 0.75

  Alignments for each domain:
  == domain 1  score: 2.8 bits;  conditional E-value: 0.15
  Lzipper-MIP1 54 kellkeiallEeevvkLEqkllsLyrklfqe 84
                  ++  ++ia++E++v  + +  +  +r+l ++
    KOO23601.1 19 QQAEASIAQVEADVRLMDSFANAVRRDLTEQ 49
                  455578*******988888777777777665 PP

  == domain 2  score: 10.6 bits;  conditional E-value: 0.00057
  Lzipper-MIP1   3 sekrssLeqeveqLqerLqeeeklrraLe..kal..ssss 38 
                   ++k ++Le ev+ Lq++ +  e+ ++aL   ka+  ++++
    KOO23601.1  78 HSKTQHLEDEVATLQRQIKALEAEKMALAadKAMltEANK 117
                   568899***********99999888888766777653333 PP

>> CREPT  Cell-cycle alteration and expression-elevated protein in tumour
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   1.8   5.4e-05     0.051      43     123 ..      18      98 ..      10     107 .. 0.95

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 5.4e-05
       CREPT  43 keeaekllkqveealellaeYnkrLeaeleeRkklakmledfleaqkellakaeekleelkeklekvksvrkelkshiqsL 123
                 +++ae+ + qve  ++l++ + +    +l+e  k+++ + + l   + + + a+ + + +++k ++++ + ++l+++i+ L
  KOO23601.1  18 QQQAEASIAQVEADVRLMDSFANAVRRDLTEQDKVKQGIIHALGYFRRQEELAQDERDGCHSKTQHLEDEVATLQRQIKAL 98 
                 789999************************************************************************987 PP

>> TMF_TATA_bd  TATA element modulatory factor 1 TATA binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.2   0.1      0.42     4e+02      15      41 ..      26      52 ..      12      74 .. 0.54
   2 ?   13.8   1.7   5.3e-05      0.05      19      64 ..      79     124 ..      75     134 .. 0.87

  Alignments for each domain:
  == domain 1  score: 1.2 bits;  conditional E-value: 0.42
  TMF_TATA_bd 15 erlsseirrlEgElaslkeelerleae 41
                  + ++ +r +++  ++++++l++  + 
   KOO23601.1 26 AQVEADVRLMDSFANAVRRDLTEQDKV 52
                 334444444444444444444333332 PP

  == domain 2  score: 13.8 bits;  conditional E-value: 5.3e-05
  TMF_TATA_bd  19 seirrlEgElaslkeelerleaerdeareeivklmkeneelkelkk 64 
                  s+ ++lE E+a+l+++++ leae+ +++++ + l++ n ++ ++ +
   KOO23601.1  79 SKTQHLEDEVATLQRQIKALEAEKMALAADKAMLTEANKKVLAQVN 124
                  566899*****************************99999877665 PP

>> CLZ  C-terminal leucine zipper domain of cyclic nucleotide-gated channels
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.1   0.2     0.015        14      19      63 ..      11      54 ..       6      59 .. 0.74
   2 ?    9.8   1.2     0.001      0.99      20      55 ..      68     103 ..      61     122 .. 0.87

  Alignments for each domain:
  == domain 1  score: 6.1 bits;  conditional E-value: 0.015
         CLZ 19 aakagaeqkeleekverLessLeaLqtrlarLlaeyessqrkLkq 63
                +a+a a+q+++e  + ++e+ +  ++  +a  ++   + q k kq
  KOO23601.1 11 PADADATQQQAEASIAQVEADVRLMDS-FANAVRRDLTEQDKVKQ 54
                788999****************98875.44444444455666666 PP

  == domain 2  score: 9.8 bits;  conditional E-value: 0.001
         CLZ  20 akagaeqkeleekverLessLeaLqtrlarLlaeye 55 
                 + a++e++   +k ++Le ++ +Lq +++ L ae  
  KOO23601.1  68 ELAQDERDGCHSKTQHLEDEVATLQRQIKALEAEKM 103
                 557889999999*****************9999975 PP

>> DUF5082  Domain of unknown function (DUF5082)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.0   0.2       1.1     1e+03      10      27 ..      16      33 ..       9      56 .. 0.64
   2 ?   13.7   1.9   6.1e-05     0.057       3      53 ..      72     122 ..      70     126 .. 0.89

  Alignments for each domain:
  == domain 1  score: -0.0 bits;  conditional E-value: 1.1
     DUF5082 10 aqiaelrseiaaleekIe 27
                a + ++++ ia++e +++
  KOO23601.1 16 ATQQQAEASIAQVEADVR 33
                455566666666666654 PP

  == domain 2  score: 13.7 bits;  conditional E-value: 6.1e-05
     DUF5082   3 tkisklqaqiaelrseiaaleekIerLkeaktklsdekeslkqkkkklekp 53 
                  ++  ++++   l+ e+a+l+ +I+ L++ k +l + k+ l +++kk+  +
  KOO23601.1  72 DERDGCHSKTQHLEDEVATLQRQIKALEAEKMALAADKAMLTEANKKVLAQ 122
                 57888999*********************************9999987665 PP

>> V_ATPase_I  V-type ATPase 116kDa subunit family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   1.2   0.00011       0.1      36     117 ..      32     120 ..       6     137 .. 0.48

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00011
  V_ATPase_I  36 erklrfleeeieklekavikeeea........eesleapeekeldeleeelekleeelkelnenleklkkelnelvelkavlekakefle 117
                  r ++ + + +++ + +++ + ++         +++e+  ++e d +++++++le+e+ +l+++ ++l++e+  l   ka+l++a++ + 
  KOO23601.1  32 VRLMDSFANAVRR-DLTEQDKVKQgiihalgyFRRQEELAQDERDGCHSKTQHLEDEVATLQRQIKALEAEKMALAADKAMLTEANKKVL 120
                 3333333333333.2222222222445555554444444444555555555555555555555555555555555555555544444332 PP

>> ABC_tran_CTD  ABC transporter C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.8   0.1      0.32     3e+02      19      32 ..      20      33 ..       4      60 .. 0.65
   2 ?   12.1   1.7   0.00019      0.18       6      49 ..      65     118 ..      61     125 .. 0.64

  Alignments for each domain:
  == domain 1  score: 1.8 bits;  conditional E-value: 0.32
  ABC_tran_CTD 19 aLEeeiaeleaela 32
                  + E+ ia++ea + 
    KOO23601.1 20 QAEASIAQVEADVR 33
                  44555555555444 PP

  == domain 2  score: 12.1 bits;  conditional E-value: 0.00019
  ABC_tran_CTD   6 eqrelee............leaeIeaLEeeiaelea.eladpelysdpeklaelsae 49 
                    q el++            le+e + L+ +i++lea ++a +   +d + l+e++++
    KOO23601.1  65 RQEELAQderdgchsktqhLEDEVATLQRQIKALEAeKMALA---ADKAMLTEANKK 118
                   566666334444444444499999999999999998455544...577777777776 PP

>> NBP1  Fungal Nap binding protein NBP1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.8   0.00021       0.2     141     203 ..      33     101 ..       1     123 [. 0.68

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00021
        NBP1 141 rilrs..eaFkkkllelkydkq....mleqLrrgrssnkserrvslrnnnleeDqvvlLqkkikklesk 203
                 r++ s  +a ++ l+e    kq     l   rr+++  ++er+   ++ +  eD+v  Lq++ik le +
  KOO23601.1  33 RLMDSfaNAVRRDLTEQDKVKQgiihALGYFRRQEELAQDERDGCHSKTQHLEDEVATLQRQIKALEAE 101
                 55554336778888887766652221345579999999999998899999****************975 PP

>> GAS  Growth-arrest specific micro-tubule binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.2   0.1      0.41   3.9e+02     158     199 ..      18      59 ..      11      60 .. 0.65
   2 ?   12.0   3.3    0.0001     0.098      53     101 ..      71     119 ..      63     125 .. 0.86

  Alignments for each domain:
  == domain 1  score: 0.2 bits;  conditional E-value: 0.41
         GAS 158 lEkkeaqleevlaaanldpaalsavsekleevlesKnqeIkd 199
                  +++ea +++v a   l ++ ++av++ l+e  + K+  I++
  KOO23601.1  18 QQQAEASIAQVEADVRLMDSFANAVRRDLTEQDKVKQGIIHA 59 
                 456667777777777777777777777777777766666655 PP

  == domain 2  score: 12.0 bits;  conditional E-value: 0.0001
         GAS  53 sqenkrlkepLkkaeeeveeLrkqlknyekdkqslknlkarlkelekel 101
                 + e      + +++e ev+ L++q+k  e +k++l++ ka l+e++k++
  KOO23601.1  71 QDERDGCHSKTQHLEDEVATLQRQIKALEAEKMALAADKAMLTEANKKV 119
                 4555666778899*******************************99986 PP

>> HAUS5  HAUS augmin-like complex subunit 5
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.1   7.5   0.00051      0.48      72     168 ..       8     106 ..       1     132 [. 0.84

  Alignments for each domain:
  == domain 1  score: 9.1 bits;  conditional E-value: 0.00051
       HAUS5  72 aeeresaaaereelekeverLraeirrldkeleareeelsreeaevkraldeisdsrhrqvlLeaydqqceeaakilaedtkrlqeqvqqlrdaer..k 168
                 a++   a+a ++++e+ +++  a +r +d+  +a+ ++l+++++  + +++     r+++ l +  +  c+++++ l +++  lq+q+++l+  +    
  KOO23601.1   8 ASQPADADATQQQAEASIAQVEADVRLMDSFANAVRRDLTEQDKVKQGIIHALGYFRRQEELAQDERDGCHSKTQHLEDEVATLQRQIKALEAEKMalA 106
                 45556788999******************************************************************************9875433443 PP

>> DUF2968  Protein of unknown function (DUF2968)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2  10.9   0.00047      0.44      91     178 ..       8     102 ..       3     104 .. 0.76

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.00047
     DUF2968  91 taelaeveirrikleaqkaqlerqiaasearaerLqadlavarqQeqavae......rQkqa.rkeaaaLeaqreaaqaqlralqrqirqLqaqq 178
                 + + a+ +  + + ea  aq+e  +   ++ a++++ dl+ + + +q + +      rQ+++ ++e +  +++ +++++++  lqrqi++L+a++
  KOO23601.1   8 ASQPADADATQQQAEASIAQVEADVRLMDSFANAVRRDLTEQDKVKQGIIHalgyfrRQEELaQDERDGCHSKTQHLEDEVATLQRQIKALEAEK 102
                 567799999********************************999999886512222256554144555666666777788888888888888776 PP

>> Prefoldin_2  Prefoldin subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.0   0.1     0.099        93      12      38 ..      16      42 ..       8      58 .. 0.71
   2 ?    9.1   2.4    0.0013       1.2      64     104 ..      81     121 ..      78     123 .. 0.89

  Alignments for each domain:
  == domain 1  score: 3.0 bits;  conditional E-value: 0.099
                 HHHHHHHHHHHHHHHHHHHHHHHHHHH CS
  Prefoldin_2 12 qqlqqlaqqikqletqlkelelvleel 38
                 +++qq ++ i+q+e++++ +++  +++
   KOO23601.1 16 ATQQQAEASIAQVEADVRLMDSFANAV 42
                 677888888888888888777766654 PP

  == domain 2  score: 9.1 bits;  conditional E-value: 0.0013
                  HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCTS CS
  Prefoldin_2  64 keeLeerketlekeiktlekqleklekeleelkeelqkklq 104
                  +++Le++ +tl+ +ik+le ++  l ++ + l e ++k l 
   KOO23601.1  81 TQHLEDEVATLQRQIKALEAEKMALAADKAMLTEANKKVLA 121
                  589********************999999999999888776 PP

>> Ax_dynein_light  Axonemal dynein light chain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.3   0.1      0.94   8.9e+02     118     154 ..      15      51 ..       8      58 .. 0.68
   2 ?    9.8   4.3   0.00075      0.71     106     165 ..      59     118 ..      42     128 .. 0.81

  Alignments for each domain:
  == domain 1  score: -0.3 bits;  conditional E-value: 0.94
  Ax_dynein_light 118 eqgkselekkikeLeeekeelekqvaelkaklealek 154
                      + ++++ e+ i+++e++++ + +  + +++ l++++k
       KOO23601.1  15 DATQQQAEASIAQVEADVRLMDSFANAVRRDLTEQDK 51 
                      4556667777777777777777777777776666655 PP

  == domain 2  score: 9.8 bits;  conditional E-value: 0.00075
  Ax_dynein_light 106 svaFgmrkalqaeqgkselekkikeLeeekeelekqvaelkaklealekrekerrqeeek 165
                      ++ +  r++  a+++++ +++k ++Le+e+++l++q++ l+a+  al ++++   ++++k
       KOO23601.1  59 ALGYFRRQEELAQDERDGCHSKTQHLEDEVATLQRQIKALEAEKMALAADKAMLTEANKK 118
                      5566667777788899999**********************9998888877766666555 PP

>> FlxA  FlxA-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.3   2.3      0.17   1.6e+02      37      69 ..       5      36 ..       1      55 [. 0.72
   2 ?   10.2   4.7    0.0006      0.57      44      81 ..      71     111 ..      43     126 .. 0.60

  Alignments for each domain:
  == domain 1  score: 2.3 bits;  conditional E-value: 0.17
        FlxA 37 sesdeltkeekkkqqqliqaQIqqlqaQIaqlq 69
                +++ +++++   + qq+ +a I q++a ++ + 
  KOO23601.1  5 GADASQPAD-ADATQQQAEASIAQVEADVRLMD 36
                555344444.77888889999999999988765 PP

  == domain 2  score: 10.2 bits;  conditional E-value: 0.0006
        FlxA  44 keekk...kqqqliqaQIqqlqaQIaqlqqqqaekaqekqq 81 
                 ++e+     + q ++ ++  lq QI+ l++++   a++k+ 
  KOO23601.1  71 QDERDgchSKTQHLEDEVATLQRQIKALEAEKMALAADKAM 111
                 55554455566666666666666666666655554444433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (160 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1660  (0.0925874); expected 358.6 (0.02)
Passed bias filter:                      799  (0.0445647); expected 358.6 (0.02)
Passed Vit filter:                       130  (0.00725082); expected 17.9 (0.001)
Passed Fwd filter:                        20  (0.00111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              19  [number of targets reported over threshold]
# CPU time: 0.51u 0.26s 00:00:00.77 Elapsed: 00:00:00.41
# Mc/sec: 1175.85
//
Query:       KOO23602.1  [L=126]
Description: ubox domain containing protein, partial [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    8.4e-17   61.1   0.0    1.2e-16   60.6   0.0    1.2  1  U-box     U-box domain
     0.0022   17.8   0.0     0.0036   17.1   0.0    1.4  1  zf-Nse    Zinc-finger of the MIZ type in Nse subunit
  ------ inclusion threshold ------
       0.01   15.9   0.0      0.015   15.4   0.0    1.3  1  zf-NOSIP  Zinc-finger of nitric oxide synthase-interacting pr


Domain annotation for each model (and alignments):
>> U-box  U-box domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.6   0.0     2e-20   1.2e-16       2      69 ..      52     118 ..      51     122 .. 0.97

  Alignments for each domain:
  == domain 1  score: 60.6 bits;  conditional E-value: 2e-20
                 SGGGB-TTT-SB-SSEEEETTTEEEEHHHHHHHHTT.SSB-TTT-SB--GGGSEE-HHHHHHHHHHHH CS
       U-box   2 PdefldpitlelmkdPvilpsgvvvdrstiekhllsrdktdPftrepltqdqlipnlelKekIdefle 69 
                 P+ f+++it  lm+dPv +++g++++r +ie++l   ++t+P+t + l+ ++l pnl+++  I ++ e
  KOO23602.1  52 PPNFICSITHDLMIDPVSAADGHTYERRAIEEWLVG-HSTSPMTGAELEVKMLFPNLAIRCLIHTWQE 118
                 899********************************9.*****************************87 PP

>> zf-Nse  Zinc-finger of the MIZ type in Nse subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   0.0     6e-07    0.0036      12      53 ..      55      93 ..      49     102 .. 0.82

  Alignments for each domain:
  == domain 1  score: 17.1 bits;  conditional E-value: 6e-07
                SB-TTTSSB-SSEEEESSS--EEEHHHHHHHCTTTS-EE-SC CS
      zf-Nse 12 lkCPltlqpfeePvtskkCpHvFEreaIlelikrkktvkCPv 53
                + C +t   + +Pv   +  H++Er+aI+e +  + +   P+
  KOO23602.1 55 FICSITHDLMIDPVSA-ADGHTYERRAIEEWL--VGHSTSPM 93
                57***********966.569**********99..55555555 PP

>> zf-NOSIP  Zinc-finger of nitric oxide synthase-interacting protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.4   0.0   2.5e-06     0.015      42      72 ..      56      86 ..      19      89 .. 0.77

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 2.5e-06
    zf-NOSIP 42 ccslslqacrdpvltedgylyekeaileyil 72
                 cs++ +   dpv + dg+ ye+ ai e+++
  KOO23602.1 56 ICSITHDLMIDPVSAADGHTYERRAIEEWLV 86
                699999999*****************99875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (126 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1718  (0.0958224); expected 358.6 (0.02)
Passed bias filter:                      963  (0.0537119); expected 358.6 (0.02)
Passed Vit filter:                       117  (0.00652574); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.41u 0.26s 00:00:00.67 Elapsed: 00:00:00.39
# Mc/sec: 972.51
//
Query:       KOO23603.1  [L=1118]
Description: serine threonine-protein phosphatase 6 regulatory ankyrin repeat subunit c-like protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    2.2e-94  310.1  46.6    2.4e-16   60.1   0.7    7.3  9  Ank_2        Ankyrin repeats (3 copies)
    7.3e-51  169.9  19.5    3.8e-08   33.7   0.2    9.9 10  Ank_4        Ankyrin repeats (many copies)
    2.4e-44  148.8  29.5    8.8e-07   29.1   0.4   11.5 11  Ank_5        Ankyrin repeats (many copies)
    1.7e-39  129.3  23.5      0.023   15.2   0.0   12.7 12  Ank_3        Ankyrin repeat
    2.3e-38  129.0  51.3     0.0027   18.1   0.3   12.6 12  Ank          Ankyrin repeat
    1.7e-28   99.8   0.0    3.4e-28   98.7   0.0    1.5  1  Pkinase      Protein kinase domain
    4.9e-23   81.7   0.0    8.8e-23   80.9   0.0    1.3  1  Pkinase_Tyr  Protein tyrosine kinase
    5.2e-05   23.3   6.0       0.58   10.3   0.0    6.4  7  SR1P         SR1 protein
  ------ inclusion threshold ------
        1.1    9.5   9.1         55    4.1   0.0    5.4  5  PTN_MK_N     PTN/MK heparin-binding protein family, N-termina
        2.9    7.7   5.6        4.6    7.0   5.6    1.2  1  Draxin       Draxin
        4.9    7.2   9.9         10    6.1   0.0    5.5  7  Prok-RING_1  Prokaryotic RING finger family 1


Domain annotation for each model (and alignments):
>> Ank_2  Ankyrin repeats (3 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.1   0.2   9.6e-17   1.6e-13      13      76 ..      10      82 ..       4      89 .. 0.79
   2 !   43.5   0.1   2.3e-14   3.7e-11      23      74 ..      86     146 ..      81     152 .. 0.83
   3 !   60.1   0.7   1.5e-19   2.4e-16       1      75 [.      96     180 ..      96     187 .. 0.86
   4 !   46.2   0.7   3.1e-15   5.1e-12      24      76 ..     155     214 ..     146     221 .. 0.82
   5 !   43.8   0.3   1.8e-14   2.9e-11      24      75 ..     188     246 ..     180     254 .. 0.82
   6 !   49.6   0.3   2.7e-16   4.4e-13      12      78 ..     206     282 ..     205     287 .. 0.85
   7 !   41.5   0.3   9.3e-14   1.5e-10      24      75 ..     254     312 ..     246     319 .. 0.83
   8 !   47.6   1.8   1.2e-15   1.9e-12      11      76 ..     304     379 ..     301     386 .. 0.83
   9 !   26.8   0.0   3.5e-09   5.7e-06      24      74 ..     386     442 ..     378     449 .. 0.80

  Alignments for each domain:
  == domain 1  score: 51.1 bits;  conditional E-value: 9.6e-17
       Ank_2 13 vklLlegadpn..k.ngktaLhyAakngnleivklLle.h..ad...ndgrtpLhyAarsghleivklLlekg 76
                v+ L  g +++  + +g t+Lh+A+++g+ ++v+lLl+ h  +d   +dg tpL++A+  gh ++v+lLl   
  KOO23603.1 10 VDALRRGDEAKaaDsDGATPLHAACIKGHGDCVQLLLSaHaiVDqaaSDGATPLYVACITGHGDCVQLLLAAH 82
                5555555555543259*********************944895566699*********************543 PP

  == domain 2  score: 43.5 bits;  conditional E-value: 2.3e-14
       Ank_2  23 n.k..ngktaLhyAakngnleivklLle.h..ad...ndgrtpLhyAarsghleivklLle 74 
                 +    ng t+L++A+ +g+ ++v+lLl+ h  +d   ++g tpL++A+  gh ++v+lLl 
  KOO23603.1  86 DqAasNGITPLIVACDRGDGDCVQLLLAaHavVDqaaSNGATPLYAACDRGHGDCVQLLLA 146
                 431359*********************944895566699********************94 PP

  == domain 3  score: 60.1 bits;  conditional E-value: 1.5e-19
       Ank_2   1 LhlAakngnlelvklLl.egadpn.k..ngktaLhyAakngnleivklLle.h.....adndgrtpLhyAarsghleivklLlek 75 
                 L++A+  g+ ++v+lLl ++a ++    ng t+L++A+ +g+ ++v+lLl+ h     ad++g tpL++A+  gh ++v+lLl  
  KOO23603.1  96 LIVACDRGDGDCVQLLLaAHAVVDqAasNGATPLYAACDRGHGDCVQLLLAaHaivdhADRNGATPLYAACDRGHGDCVQLLLAA 180
                 67899999889******87777775246**********************9547866688**********************943 PP

  == domain 4  score: 46.2 bits;  conditional E-value: 3.1e-15
       Ank_2  24 k.ngktaLhyAakngnleivklLle.h..ad...ndgrtpLhyAarsghleivklLlekg 76 
                 + ng t+L++A+ +g+ ++v+lLl+ h  +d   ++g tpL++A+  gh ++v+lLl   
  KOO23603.1 155 DrNGATPLYAACDRGHGDCVQLLLAaHaiVDqaaRNGATPLYVACDGGHGDCVQLLLAAH 214
                 258*********************944895556699*********99**********543 PP

  == domain 5  score: 43.8 bits;  conditional E-value: 1.8e-14
       Ank_2  24 k.ngktaLhyAakngnleivklLle.h..ad...ndgrtpLhyAarsghleivklLlek 75 
                   ng t+L++A+ +g+ ++v+lLl+ h  +d   +dg tpL +A+  gh ++v+lLl  
  KOO23603.1 188 ArNGATPLYVACDGGHGDCVQLLLAaHaaVDqaaSDGATPLLVACDRGHGDCVQLLLAA 246
                 249*********************944885566799*********************54 PP

  == domain 6  score: 49.6 bits;  conditional E-value: 2.7e-16
       Ank_2  12 lvklLl.egadpn.k..ngktaLhyAakngnleivklLle.h.....adndgrtpLhyAarsghleivklLlekgad 78 
                 +v+lLl ++a ++    +g t+L +A+ +g+ ++v+lLl+ h     ad++g tpL++A+  g  ++v+lLl   a 
  KOO23603.1 206 CVQLLLaAHAAVDqAasDGATPLLVACDRGHGDCVQLLLAaHaivdqADRNGATPLIVACDRGDGDCVQLLLAAHAA 282
                 99****99999986257**********************9548977777*************999*******55444 PP

  == domain 7  score: 41.5 bits;  conditional E-value: 9.3e-14
       Ank_2  24 k.ngktaLhyAakngnleivklLle.h.....adndgrtpLhyAarsghleivklLlek 75 
                 + ng t+L++A+ +g+ ++v+lLl+ h     ad+dg tpL++A+ +gh  ++ lLl  
  KOO23603.1 254 DrNGATPLIVACDRGDGDCVQLLLAaHaavdqADRDGDTPLYAACIKGHGSCLHLLLAA 312
                 258*********************9548877777**********************954 PP

  == domain 8  score: 47.6 bits;  conditional E-value: 1.2e-15
       Ank_2  11 elvklLl.egadpn.k..ngktaLhyAakngnleivklLle.h..ad...ndgrtpLhyAarsghleivklLlekg 76 
                 ++++lLl ++a ++    ng+++L +A+++g+ ++v+ Ll+ h  +d   +dg tpL++A+ +gh ++v+lLl   
  KOO23603.1 304 SCLHLLLaAHAAVDkAasNGNSPLSAACIKGHGDCVQQLLAaHavVDqaaSDGATPLYAACIKGHGDCVQLLLAAH 379
                 689999998888886257******************8888745895566799*********************543 PP

  == domain 9  score: 26.8 bits;  conditional E-value: 3.5e-09
       Ank_2  24 k.ngktaLhyAakngnleivklLleh...ad..ndgrtpLhyAarsghleivklLle 74 
                   +g t+L++A+ +g+++ivklL+ +   +d  + + t+L +A  +gh+ i+ +L +
  KOO23603.1 386 AsDGVTPLIAACLAGSIDIVKLLVHAgarTDfrSPNGTALDVAEAQGHTAIATFLRY 442
                 1489********************65766446544669**************99974 PP

>> Ank_4  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.7   0.0   1.2e-06    0.0019      31      55 .]      22      46 ..      19      46 .. 0.93
   2 !   33.7   0.2   2.3e-11   3.8e-08       3      55 .]      28      79 ..      26      79 .. 0.94
   3 !   23.4   0.0     4e-08   6.6e-05       3      55 .]      61     112 ..      59     112 .. 0.93
   4 !   33.7   0.4   2.4e-11   3.9e-08       3      55 .]     127     178 ..     125     178 .. 0.96
   5 !   11.0   0.0    0.0003      0.49      33      55 .]     189     211 ..     182     211 .. 0.92
   6 !   28.8   0.0   8.1e-10   1.3e-06       3      55 .]     226     277 ..     223     277 .. 0.95
   7 !   19.2   0.1   8.5e-07    0.0014      30      55 .]     285     310 ..     278     310 .. 0.93
   8 !   24.3   0.1   2.1e-08   3.4e-05       2      55 .]     324     376 ..     321     376 .. 0.90
   9 !   12.3   0.0   0.00012      0.19      33      55 .]     387     409 ..     378     409 .. 0.91
  10 ?   -1.4   0.0       2.4   3.9e+03       3      22 ..     423     442 ..     421     447 .. 0.80

  Alignments for each domain:
  == domain 1  score: 18.7 bits;  conditional E-value: 1.2e-06
       Ank_4 31 dnrsGetalhiAakrgnveilklLl 55
                ++++G t+lh A+ +g+ ++++lLl
  KOO23603.1 22 ADSDGATPLHAACIKGHGDCVQLLL 46
                5899********************8 PP

  == domain 2  score: 33.7 bits;  conditional E-value: 2.3e-11
       Ank_4  3 taLhyaaisgrlelvrlLlekgadinaqdnrsGetalhiAakrgnveilklLl 55
                t+Lh+a+i+g+ ++v+lLl+  a ++    ++G t+l+ A+ +g+ ++++lLl
  KOO23603.1 28 TPLHAACIKGHGDCVQLLLSAHAIVDQA-ASDGATPLYVACITGHGDCVQLLL 79
                89*****************999999997.677********************8 PP

  == domain 3  score: 23.4 bits;  conditional E-value: 4e-08
       Ank_4   3 taLhyaaisgrlelvrlLlekgadinaqdnrsGetalhiAakrgnveilklLl 55 
                 t+L  a+i g+ ++v+lLl+  a ++    ++G t+l+ A+ rg+ ++++lLl
  KOO23603.1  61 TPLYVACITGHGDCVQLLLAAHAAVDQA-ASNGITPLIVACDRGDGDCVQLLL 112
                 8999***************998888887.778********************8 PP

  == domain 4  score: 33.7 bits;  conditional E-value: 2.4e-11
       Ank_4   3 taLhyaaisgrlelvrlLlekgadinaqdnrsGetalhiAakrgnveilklLl 55 
                 t+L +a+  g+ ++v+lLl+  a +++  +r+G t+l+ A+ rg+ ++++lLl
  KOO23603.1 127 TPLYAACDRGHGDCVQLLLAAHAIVDHA-DRNGATPLYAACDRGHGDCVQLLL 178
                 899************************8.***********************8 PP

  == domain 5  score: 11.0 bits;  conditional E-value: 0.0003
       Ank_4  33 rsGetalhiAakrgnveilklLl 55 
                 r+G t+l+ A+ +g+ ++++lLl
  KOO23603.1 189 RNGATPLYVACDGGHGDCVQLLL 211
                 79********************8 PP

  == domain 6  score: 28.8 bits;  conditional E-value: 8.1e-10
       Ank_4   3 taLhyaaisgrlelvrlLlekgadinaqdnrsGetalhiAakrgnveilklLl 55 
                 t+L  a+  g+ ++v+lLl+  a ++   +r+G t+l+ A+ rg+ ++++lLl
  KOO23603.1 226 TPLLVACDRGHGDCVQLLLAAHAIVDQA-DRNGATPLIVACDRGDGDCVQLLL 277
                 89*****************999999997.***********************8 PP

  == domain 7  score: 19.2 bits;  conditional E-value: 8.5e-07
       Ank_4  30 qdnrsGetalhiAakrgnveilklLl 55 
                 q++r+G+t+l+ A+ +g+ ++l+lLl
  KOO23603.1 285 QADRDGDTPLYAACIKGHGSCLHLLL 310
                 579**********************8 PP

  == domain 8  score: 24.3 bits;  conditional E-value: 2.1e-08
       Ank_4   2 ltaLhyaaisgrlelvrlLlekgadinaqdnrsGetalhiAakrgnveilklLl 55 
                 +++L +a+i+g+ ++v+ Ll+  a ++    ++G t+l+ A+ +g+ ++++lLl
  KOO23603.1 324 NSPLSAACIKGHGDCVQQLLAAHAVVDQA-ASDGATPLYAACIKGHGDCVQLLL 376
                 799**************888877777776.677********************8 PP

  == domain 9  score: 12.3 bits;  conditional E-value: 0.00012
       Ank_4  33 rsGetalhiAakrgnveilklLl 55 
                 ++G t+l+ A++ g+++i+klL+
  KOO23603.1 387 SDGVTPLIAACLAGSIDIVKLLV 409
                 5799*****************96 PP

  == domain 10  score: -1.4 bits;  conditional E-value: 2.4
       Ank_4   3 taLhyaaisgrlelvrlLle 22 
                 taL+ a ++g++ ++ +L +
  KOO23603.1 423 TALDVAEAQGHTAIATFLRY 442
                 88999999999999888876 PP

>> Ank_5  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   0.0   4.6e-06    0.0074      13      37 ..      23      48 ..      18      53 .. 0.89
   2 !   22.5   0.2   6.5e-08   0.00011      14      56 .]      57      99 ..      49      99 .. 0.92
   3 !   11.6   0.0   0.00016      0.27      14      38 ..      90     114 ..      82     121 .. 0.80
   4 !   11.8   0.3   0.00014      0.24       4      37 ..     114     146 ..     111     150 .. 0.77
   5 !   16.3   0.4   5.7e-06    0.0093       1      37 [.     144     179 ..     144     186 .. 0.88
   6 !   23.4   0.4   3.2e-08   5.3e-05      13      56 .]     188     231 ..     179     231 .. 0.90
   7 !   11.4   0.1   0.00019       0.3      11      37 ..     219     245 ..     212     250 .. 0.81
   8 !   29.1   0.4   5.4e-10   8.8e-07       2      53 ..     244     294 ..     243     297 .. 0.92
   9 !   11.1   0.1   0.00025       0.4       2      40 ..     310     347 ..     309     356 .. 0.82
  10 !   14.9   0.3   1.5e-05     0.024       3      45 ..     344     385 ..     342     389 .. 0.75
  11 !   15.4   0.1   1.1e-05     0.018      13      56 .]     386     428 ..     379     428 .. 0.73

  Alignments for each domain:
  == domain 1  score: 16.6 bits;  conditional E-value: 4.6e-06
       Ank_5 13 dgggntpLhvAakygaadvvrlLl.a 37
                d +g tpLh A+ +g+ d+v+lLl a
  KOO23603.1 23 DSDGATPLHAACIKGHGDCVQLLLsA 48
                67789*******************55 PP

  == domain 2  score: 22.5 bits;  conditional E-value: 6.5e-08
       Ank_5 14 gggntpLhvAakygaadvvrlLlargadlnltdsrGltaldlA 56
                 +g tpL vA+  g+ d+v+lLla +a+ ++  s+G t+l +A
  KOO23603.1 57 SDGATPLYVACITGHGDCVQLLLAAHAAVDQAASNGITPLIVA 99
                4678************************************998 PP

  == domain 3  score: 11.6 bits;  conditional E-value: 0.00016
       Ank_5  14 gggntpLhvAakygaadvvrlLlar 38 
                  +g tpL+vA+ +g  d+v+lLla 
  KOO23603.1  90 SNGITPLIVACDRGDGDCVQLLLAA 114
                 4566*******************44 PP

  == domain 4  score: 11.8 bits;  conditional E-value: 0.00014
       Ank_5   4 hgpadvnrldgggntpLhvAakygaadvvrlLla 37 
                 +  a v+    +g tpL  A+ +g+ d+v+lLla
  KOO23603.1 114 AH-AVVDQAASNGATPLYAACDRGHGDCVQLLLA 146
                 44.55555566788*******************4 PP

  == domain 5  score: 16.3 bits;  conditional E-value: 5.7e-06
       Ank_5   1 LlehgpadvnrldgggntpLhvAakygaadvvrlLla 37 
                 Ll++  a v++ d++g tpL  A+ +g+ d+v+lLla
  KOO23603.1 144 LLAAH-AIVDHADRNGATPLYAACDRGHGDCVQLLLA 179
                 56665.99999*************************4 PP

  == domain 6  score: 23.4 bits;  conditional E-value: 3.2e-08
       Ank_5  13 dgggntpLhvAakygaadvvrlLlargadlnltdsrGltaldlA 56 
                  ++g tpL vA+ +g+ d+v+lLla +a+ ++  s+G t+l +A
  KOO23603.1 188 ARNGATPLYVACDGGHGDCVQLLLAAHAAVDQAASDGATPLLVA 231
                 57899***********************************9877 PP

  == domain 7  score: 11.4 bits;  conditional E-value: 0.00019
       Ank_5  11 rldgggntpLhvAakygaadvvrlLla 37 
                     +g tpL vA+ +g+ d+v+lLla
  KOO23603.1 219 QAASDGATPLLVACDRGHGDCVQLLLA 245
                 5556788*******************4 PP

  == domain 8  score: 29.1 bits;  conditional E-value: 5.4e-10
       Ank_5   2 lehgpadvnrldgggntpLhvAakygaadvvrlLlargadlnltdsrGltal 53 
                 l++  a v+  d++g tpL+vA+ +g  d+v+lLla +a+ ++ d +G+t+l
  KOO23603.1 244 LAAH-AIVDQADRNGATPLIVACDRGDGDCVQLLLAAHAAVDQADRDGDTPL 294
                 5665.889999****************************************9 PP

  == domain 9  score: 11.1 bits;  conditional E-value: 0.00025
       Ank_5   2 lehgpadvnrldgggntpLhvAakygaadvvrlLlarga 40 
                 l++  a+v+    +gn+pL  A+ +g+ d+v+ Lla +a
  KOO23603.1 310 LAAH-AAVDKAASNGNSPLSAACIKGHGDCVQQLLAAHA 347
                 5565.888888999*********************6555 PP

  == domain 10  score: 14.9 bits;  conditional E-value: 1.5e-05
       Ank_5   3 ehgpadvnrldgggntpLhvAakygaadvvrlLlargadlnlt 45 
                 ++  a v+    +g tpL  A+ +g+ d+v+lLla +a+ ++ 
  KOO23603.1 344 AAH-AVVDQAASDGATPLYAACIKGHGDCVQLLLAAHAAVDQA 385
                 554.44555556677*******************888877665 PP

  == domain 11  score: 15.4 bits;  conditional E-value: 1.1e-05
       Ank_5  13 dgggntpLhvAakygaadvvrlLlargadlnltdsrGltaldlA 56 
                   +g+tpL+ A+ +g+ d+v+lL+  ga ++ +  +  tald+A
  KOO23603.1 386 ASDGVTPLIAACLAGSIDIVKLLVHAGARTDFRSPN-GTALDVA 428
                 5689********************444444444444.4777776 PP

>> Ank_3  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.0   1.4e-05     0.023       1      24 [.      25      48 ..      25      54 .. 0.87
   2 !   11.8   0.0   0.00018      0.29       1      28 [.      58      84 ..      58      87 .. 0.87
   3 !    9.3   0.0    0.0012       1.9       1      24 [.      91     114 ..      91     119 .. 0.90
   4 !   10.9   0.1   0.00037       0.6       1      26 [.     124     148 ..     124     153 .. 0.86
   5 !   10.8   0.0   0.00038      0.62       1      24 [.     157     180 ..     157     186 .. 0.87
   6 !   11.6   0.0   0.00021      0.34       1      28 [.     190     216 ..     190     219 .. 0.87
   7 !   12.0   0.0   0.00016      0.26       1      24 [.     223     246 ..     223     252 .. 0.87
   8 !   10.3   0.0   0.00054      0.89       1      28 [.     256     282 ..     256     285 .. 0.87
   9 !    9.4   0.1    0.0011       1.7       1      29 [.     289     316 ..     289     318 .. 0.85
  10 !   10.4   0.0   0.00053      0.86       1      24 [.     322     345 ..     322     350 .. 0.90
  11 !   11.8   0.0   0.00018       0.3       1      28 [.     355     381 ..     355     384 .. 0.87
  12 !   11.0   0.0   0.00032      0.52       1      26 [.     388     412 ..     388     416 .. 0.89

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 1.4e-05
       Ank_3  1 nGetpLhlAarsgnleivkfLlen 24
                +G tpLh A+  g+ + v++Ll  
  KOO23603.1 25 DGATPLHAACIKGHGDCVQLLLSA 48
                699******************993 PP

  == domain 2  score: 11.8 bits;  conditional E-value: 0.00018
       Ank_3  1 nGetpLhlAarsgnleivkfLlenkgad 28
                +G tpL++A+  g+ + v++Ll   +a 
  KOO23603.1 58 DGATPLYVACITGHGDCVQLLLA-AHAA 84
                699*******************9.5555 PP

  == domain 3  score: 9.3 bits;  conditional E-value: 0.0012
       Ank_3   1 nGetpLhlAarsgnleivkfLlen 24 
                 nG tpL +A+  g+ + v++Ll  
  KOO23603.1  91 NGITPLIVACDRGDGDCVQLLLAA 114
                 79*******************984 PP

  == domain 4  score: 10.9 bits;  conditional E-value: 0.00037
       Ank_3   1 nGetpLhlAarsgnleivkfLlenkg 26 
                 nG tpL+ A+  g+ + v++Ll   +
  KOO23603.1 124 NGATPLYAACDRGHGDCVQLLLAA-H 148
                 799*******************93.3 PP

  == domain 5  score: 10.8 bits;  conditional E-value: 0.00038
       Ank_3   1 nGetpLhlAarsgnleivkfLlen 24 
                 nG tpL+ A+  g+ + v++Ll  
  KOO23603.1 157 NGATPLYAACDRGHGDCVQLLLAA 180
                 799*******************93 PP

  == domain 6  score: 11.6 bits;  conditional E-value: 0.00021
       Ank_3   1 nGetpLhlAarsgnleivkfLlenkgad 28 
                 nG tpL++A+  g+ + v++Ll   +a 
  KOO23603.1 190 NGATPLYVACDGGHGDCVQLLLA-AHAA 216
                 799*******************9.5555 PP

  == domain 7  score: 12.0 bits;  conditional E-value: 0.00016
       Ank_3   1 nGetpLhlAarsgnleivkfLlen 24 
                 +G tpL +A+  g+ + v++Ll  
  KOO23603.1 223 DGATPLLVACDRGHGDCVQLLLAA 246
                 699*******************93 PP

  == domain 8  score: 10.3 bits;  conditional E-value: 0.00054
       Ank_3   1 nGetpLhlAarsgnleivkfLlenkgad 28 
                 nG tpL +A+  g+ + v++Ll   +a 
  KOO23603.1 256 NGATPLIVACDRGDGDCVQLLLA-AHAA 282
                 799*******************9.5555 PP

  == domain 9  score: 9.4 bits;  conditional E-value: 0.0011
       Ank_3   1 nGetpLhlAarsgnleivkfLlenkgadv 29 
                 +G tpL+ A+  g+ + +++Ll   +a v
  KOO23603.1 289 DGDTPLYAACIKGHGSCLHLLLA-AHAAV 316
                 699*************9999999.55555 PP

  == domain 10  score: 10.4 bits;  conditional E-value: 0.00053
       Ank_3   1 nGetpLhlAarsgnleivkfLlen 24 
                 nG++pL  A+  g+ + v+ Ll  
  KOO23603.1 322 NGNSPLSAACIKGHGDCVQQLLAA 345
                 7********************984 PP

  == domain 11  score: 11.8 bits;  conditional E-value: 0.00018
       Ank_3   1 nGetpLhlAarsgnleivkfLlenkgad 28 
                 +G tpL+ A+  g+ + v++Ll   +a 
  KOO23603.1 355 DGATPLYAACIKGHGDCVQLLLA-AHAA 381
                 699*******************9.5555 PP

  == domain 12  score: 11.0 bits;  conditional E-value: 0.00032
       Ank_3   1 nGetpLhlAarsgnleivkfLlenkg 26 
                 +G tpL  A+++g+++ivk+L+   g
  KOO23603.1 388 DGVTPLIAACLAGSIDIVKLLVH-AG 412
                 689******************97.45 PP

>> Ank  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.1   0.3   1.6e-06    0.0027       1      25 [.      25      48 ..      25      55 .. 0.81
   2 !   13.6   0.3   4.4e-05     0.072       1      24 [.      58      83 ..      58      89 .. 0.78
   3 !   12.1   0.0   0.00013      0.21       1      23 [.      91     114 ..      91     121 .. 0.84
   4 !   13.5   0.3   4.5e-05     0.073       1      24 [.     124     148 ..     124     156 .. 0.81
   5 !   13.4   0.2   4.9e-05      0.08       1      23 [.     157     180 ..     157     189 .. 0.84
   6 !   14.3   0.3   2.6e-05     0.042       1      24 [.     190     215 ..     190     221 .. 0.82
   7 !   12.8   0.1   7.5e-05      0.12       1      25 [.     223     248 ..     223     255 .. 0.81
   8 !   11.9   0.1   0.00015      0.24       1      29 [.     256     285 ..     256     288 .. 0.80
   9 !   12.2   0.7   0.00012       0.2       1      23 [.     289     313 ..     289     319 .. 0.80
  10 !    7.0   0.1    0.0054       8.8       1      23 [.     322     345 ..     322     352 .. 0.80
  11 !   13.2   0.3   5.9e-05     0.096       1      24 [.     355     380 ..     355     386 .. 0.79
  12 !   17.2   0.0   3.1e-06     0.005       1      25 [.     388     413 ..     388     421 .. 0.89

  Alignments for each domain:
  == domain 1  score: 18.1 bits;  conditional E-value: 1.6e-06
                TSBBHHHHHHHHTTHHHHHHHHTTT CS
         Ank  1 dGnTPLHlAatngkkriiklLLhGA 25
                dG TPLH A+  g+ ++++lLL +A
  KOO23603.1 25 DGATPLHAACIKGHGDCVQLLL-SA 48
                899*******667777******.43 PP

  == domain 2  score: 13.6 bits;  conditional E-value: 4.4e-05
                TSBBHHHHHHHHTTHHHHHHHH..TT CS
         Ank  1 dGnTPLHlAatngkkriiklLL..hG 24
                dG TPL +A+  g+ ++++lLL  h 
  KOO23603.1 58 DGATPLYVACITGHGDCVQLLLaaHA 83
                899*******556667******6443 PP

  == domain 3  score: 12.1 bits;  conditional E-value: 0.00013
                 TSBBHHHHHHHHTTHHHHHHHH.T CS
         Ank   1 dGnTPLHlAatngkkriiklLL.h 23 
                 +G TPL +A+ +g+ ++++lLL  
  KOO23603.1  91 NGITPLIVACDRGDGDCVQLLLaA 114
                 7*********888888*****952 PP

  == domain 4  score: 13.5 bits;  conditional E-value: 4.5e-05
                 TSBBHHHHHHHHTTHHHHHHHH.TT CS
         Ank   1 dGnTPLHlAatngkkriiklLL.hG 24 
                 +G TPL  A+ +g+ ++++lLL   
  KOO23603.1 124 NGATPLYAACDRGHGDCVQLLLaAH 148
                 799*******999999*****9533 PP

  == domain 5  score: 13.4 bits;  conditional E-value: 4.9e-05
                 TSBBHHHHHHHHTTHHHHHHHH.T CS
         Ank   1 dGnTPLHlAatngkkriiklLL.h 23 
                 +G TPL  A+ +g+ ++++lLL  
  KOO23603.1 157 NGATPLYAACDRGHGDCVQLLLaA 180
                 799*******999999*****952 PP

  == domain 6  score: 14.3 bits;  conditional E-value: 2.6e-05
                 TSBBHHHHHHHHTTHHHHHHHH..TT CS
         Ank   1 dGnTPLHlAatngkkriiklLL..hG 24 
                 +G TPL +A+ +g+ ++++lLL  h 
  KOO23603.1 190 NGATPLYVACDGGHGDCVQLLLaaHA 215
                 799*******999999******6443 PP

  == domain 7  score: 12.8 bits;  conditional E-value: 7.5e-05
                 TSBBHHHHHHHHTTHHHHHHHH.TTT CS
         Ank   1 dGnTPLHlAatngkkriiklLL.hGA 25 
                 dG TPL +A+ +g+ ++++lLL   A
  KOO23603.1 223 DGATPLLVACDRGHGDCVQLLLaAHA 248
                 899*******999999******5334 PP

  == domain 8  score: 11.9 bits;  conditional E-value: 0.00015
                 TSBBHHHHHHHHTTHHHHHHHH..TTTSTTC CS
         Ank   1 dGnTPLHlAatngkkriiklLL..hGAnlna 29 
                 +G TPL +A+ +g+ ++++lLL  h A +++
  KOO23603.1 256 NGATPLIVACDRGDGDCVQLLLaaHAA-VDQ 285
                 799*******888888******75544.655 PP

  == domain 9  score: 12.2 bits;  conditional E-value: 0.00012
                 TSBBHHHHHHHHTTHHHHHHHH..T CS
         Ank   1 dGnTPLHlAatngkkriiklLL..h 23 
                 dG+TPL  A+  g+ ++++lLL  h
  KOO23603.1 289 DGDTPLYAACIKGHGSCLHLLLaaH 313
                 8*********777788******544 PP

  == domain 10  score: 7.0 bits;  conditional E-value: 0.0054
                 TSBBHHHHHHHHTTHHHHHHHH.T CS
         Ank   1 dGnTPLHlAatngkkriiklLL.h 23 
                 +Gn+PL  A+  g+ ++++ LL  
  KOO23603.1 322 NGNSPLSAACIKGHGDCVQQLLaA 345
                 7*********667777***99942 PP

  == domain 11  score: 13.2 bits;  conditional E-value: 5.9e-05
                 TSBBHHHHHHHHTTHHHHHHHH..TT CS
         Ank   1 dGnTPLHlAatngkkriiklLL..hG 24 
                 dG TPL  A+  g+ ++++lLL  h 
  KOO23603.1 355 DGATPLYAACIKGHGDCVQLLLaaHA 380
                 899*******667777******6443 PP

  == domain 12  score: 17.2 bits;  conditional E-value: 3.1e-06
                 TSBBHHHHHHHHTTHHHHHHHHT.TT CS
         Ank   1 dGnTPLHlAatngkkriiklLLh.GA 25 
                 dG TPL  A+  g+ +i+klL+h GA
  KOO23603.1 388 DGVTPLIAACLAGSIDIVKLLVHaGA 413
                 8*********999999****997698 PP

>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   98.7   0.0   2.1e-31   3.4e-28       4     259 ..     669     961 ..     666     964 .. 0.77

  Alignments for each domain:
  == domain 1  score: 98.7 bits;  conditional E-value: 2.1e-31
                 EEEEEEESSEEEEEEEETT...........TTEEEEEEEEECHCHCHHHHHHHHHHHHHHHHHSCTTB--EEEEEEESSEEEEEEE--TTEBHHHHHHH CS
     Pkinase   4 leklGeGsfGkVykaveke...........tgkivAvKkikkekakkkkekkvlrEikilkklkhpnivrlyevfeekdelylvleyveggeladller 91 
                 ++ +G+G++G+V+ a               ++k vAvK+ k    +     +++rE+++l++++hp+++ l++++ e++  +lv+ +++gg++ad+l  
  KOO23603.1 669 QRLIGSGGYGRVFTADALPslppaglplwlRHKPVAVKRAKSGVHDL---ADLQREVNVLQQCSHPHLLPLLGYYLEHEAPCLVFPLMRGGSFADRLWP 764
                 67788888888888765541111111111146677777766665554...569********************************************97 PP

                 HSS--HH................HHHHHHHHHHHHHHHHHHTT......EE-SS-SGGGEEEETTTEEEE-SGTTSEESSSSCS......BCTTTSCGG CS
     Pkinase  92 kgslsee................eakkiakqilegleylHskg......iiHrDlKpeNiLidekgelKitDFGlakelesssk......ltsfvgtse 162
                 k + +e+                +  +i++q   +l ylH         ++HrD KpeNiL+d++ +  ++D G+ak     +        +    t+ 
  KOO23603.1 765 KEADPEHlrrlglgaslspliwhQRLRILQQATDALLYLHTPVpggkgaVVHRDFKPENILLDDELNAYLADTGFAKMDADPEAskmksaSNALYLTRG 863
                 777677688889999999999978889*************865567778**************999**********9877666678888889999**** PP

                 GS-HHHHTTSCBSHHHHHHHHHHHHHHHHHSS-STTTSSHHH.HHHHHHHTHHHHHHHCTSHH...HHHTTS..-HHHHHHHHHHT-SSGCCSTTHHHH CS
     Pkinase 163 YlAPEvlkeneyskkvDvWslGvilyelltgkppfsgekgke.kvekeldqlekilkilgetkeklpeasei..seeakdllkkllkkdpkkRltaeel 258
                 Yl P v++++eys+++D W+lG++l+  +tg+ p++  ++ e ++e ++ +    +k+  + +  +p +  +  ++ +++  + l++   +kRlt++ +
  KOO23603.1 864 YLDPGVVQGREYSSATDGWALGITLLVAFTGRSPLNMIDNCEeSFELDFPD-IDAVKLA-DAEAGWPPHVAVaiKDVVRSAASGLCHGSVRKRLTVATA 960
                 ***********************************9665543034444444.2223332.334444433332337777777888999999999998877 PP

                 H CS
     Pkinase 259 l 259
                 l
  KOO23603.1 961 L 961
                 6 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   80.9   0.0   5.4e-26   8.8e-23       5     212 ..     670     904 ..     667     912 .. 0.87

  Alignments for each domain:
  == domain 1  score: 80.9 bits;  conditional E-value: 5.4e-26
                  EEEEEESSEEEEEEEEET.......TTTSSEEEEEEEEESTTSSHHHHHHHHHHHHHHHTS-BTTB--EEEEEESSSSEEEEEE--TTEBHHHHHHHT CS
  Pkinase_Tyr   5 kklGeGafGkVvegtlkg.......ekekkevkVavKtlkeeateeekeelleeakimkklkhpnivkllgvctkeepllivteyvkgGdLlkfLrkk 95 
                  + +G+G +G+V+ + +             ++  VavK  k++ ++   ++l +e++++++++hp+++ llg ++++e  ++v+ +++gG++ + L  k
   KOO23603.1 670 RLIGSGGYGRVFTADALPslppaglPLWLRHKPVAVKRAKSGVHDL--ADLQREVNVLQQCSHPHLLPLLGYYLEHEAPCLVFPLMRGGSFADRLWPK 765
                  679************99999888776677899*******8888776..9**********************************************999 PP

                  ..............CTTTSBHHHHHHHHHHHHHHHHHHH......HTTEEEST-SGGGEEEEETTEEEE-STTTHEETTTSSEE...EETTSSTSGGG CS
  Pkinase_Tyr  96 ..............ekekltlkdllsfalqvAkGmeyLe......skklvHrdlaarNvLlsenkvvkisDfGLardiekddey...vkkeeaklpvk 170
                                + ++l  ++ l++ +q  +++ yL+      +  +vHrd    N+Ll+++  + ++D G a+   + +     ++++   l   
   KOO23603.1 766 eadpehlrrlglgaSLSPLIWHQRLRILQQATDALLYLHtpvpggKGAVVHRDFKPENILLDDELNAYLADTGFAKMDADPEASkmkSASNALYLTRG 863
                  9************999**********************9333332346***************************98744333322133334447778 PP

                  GS-HHHHHHSEEEHHHHHHHHHHHHHHHHTTSSGTTTTSHHH CS
  Pkinase_Tyr 171 WmapEslkekkftsksDvWsfGvllwEiftlgespypglkne 212
                  ++ p +++ ++++s++D W+ G++l   ft g+sp++ ++n 
   KOO23603.1 864 YLDPGVVQGREYSSATDGWALGITLLVAFT-GRSPLNMIDNC 904
                  9*************************9999.****9988765 PP

>> SR1P  SR1 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   0.0      0.92   1.5e+03      11      33 ..      50      74 ..      49      76 .. 0.79
   2 ?   -3.2   0.0       5.8   9.5e+03      13      33 ..      85     107 ..      83     109 .. 0.73
   3 ?    4.4   0.0     0.025        41      12      34 ..     117     141 ..     115     143 .. 0.83
   4 !   10.3   0.0   0.00035      0.58      11      34 ..     149     174 ..     148     176 .. 0.89
   5 ?    0.6   0.0      0.38   6.2e+02      12      33 ..     183     206 ..     181     208 .. 0.81
   6 ?   -0.1   0.0      0.63     1e+03      12      31 ..     282     301 ..     280     307 .. 0.77
   7 ?    2.4   0.0       0.1   1.7e+02      12      33 ..     348     371 ..     346     373 .. 0.78

  Alignments for each domain:
  == domain 1  score: -0.6 bits;  conditional E-value: 0.92
        SR1P 11 atIdhfedekVttLYgtCn..qceC 33
                a++d   +++ t LY  C    ++C
  KOO23603.1 50 AIVDQAASDGATPLYVACItgHGDC 74
                578888899999******7557788 PP

  == domain 2  score: -3.2 bits;  conditional E-value: 5.8
        SR1P  13 IdhfedekVttLYgtCn..qceC 33 
                 +d   ++++t L   C+   ++C
  KOO23603.1  85 VDQAASNGITPLIVACDrgDGDC 107
                 67777899999999998555666 PP

  == domain 3  score: 4.4 bits;  conditional E-value: 0.025
        SR1P  12 tIdhfedekVttLYgtCn..qceCk 34 
                 ++d   +++ t LY+ C+   ++C 
  KOO23603.1 117 VVDQAASNGATPLYAACDrgHGDCV 141
                 6788889999*******97778995 PP

  == domain 4  score: 10.3 bits;  conditional E-value: 0.00035
        SR1P  11 atIdhfedekVttLYgtCn..qceCk 34 
                 a++dh + ++ t LY+ C+   ++C 
  KOO23603.1 149 AIVDHADRNGATPLYAACDrgHGDCV 174
                 68****************97778995 PP

  == domain 5  score: 0.6 bits;  conditional E-value: 0.38
        SR1P  12 tIdhfedekVttLYgtCn..qceC 33 
                 ++d    ++ t LY  C+   ++C
  KOO23603.1 183 IVDQAARNGATPLYVACDggHGDC 206
                 67777889999******9777888 PP

  == domain 6  score: -0.1 bits;  conditional E-value: 0.63
        SR1P  12 tIdhfedekVttLYgtCnqc 31 
                 ++d  + ++ t LY+ C ++
  KOO23603.1 282 AVDQADRDGDTPLYAACIKG 301
                 678888888899*****754 PP

  == domain 7  score: 2.4 bits;  conditional E-value: 0.1
        SR1P  12 tIdhfedekVttLYgtCn..qceC 33 
                 ++d   +++ t LY+ C    ++C
  KOO23603.1 348 VVDQAASDGATPLYAACIkgHGDC 371
                 6777888999*******7456788 PP

>> PTN_MK_N  PTN/MK heparin-binding protein family, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.3   0.0      0.12     2e+02       7      29 ..      19      41 ..      14      44 .. 0.84
   2 ?    3.7   0.0     0.045        73       9      29 ..      54      74 ..      50      78 .. 0.89
   3 ?   -2.0   0.1       2.7   4.4e+03      10      29 ..     121     140 ..     118     142 .. 0.81
   4 ?   -1.0   0.1       1.3   2.1e+03      19      29 ..     328     338 ..     315     342 .. 0.75
   5 ?    4.1   0.0     0.034        55       9      29 ..     351     371 ..     346     375 .. 0.89

  Alignments for each domain:
  == domain 1  score: 2.3 bits;  conditional E-value: 0.12
                --------SS--B---EE-SSSS CS
    PTN_MK_N  7 kkkkaseCaewqygkCvpnsgDC 29
                 k ++s+ a   +++C+  +gDC
  KOO23603.1 19 AKAADSDGATPLHAACIKGHGDC 41
                456789999999*********** PP

  == domain 2  score: 3.7 bits;  conditional E-value: 0.045
                ------SS--B---EE-SSSS CS
    PTN_MK_N  9 kkaseCaewqygkCvpnsgDC 29
                ++as+ a   y +C+  +gDC
  KOO23603.1 54 QAASDGATPLYVACITGHGDC 74
                5789999999*********** PP

  == domain 3  score: -2.0 bits;  conditional E-value: 2.7
                 -----SS--B---EE-SSSS CS
    PTN_MK_N  10 kaseCaewqygkCvpnsgDC 29 
                 +as+ a   y++C   +gDC
  KOO23603.1 121 AASNGATPLYAACDRGHGDC 140
                 567777888999*99****9 PP

  == domain 4  score: -1.0 bits;  conditional E-value: 1.3
                 B---EE-SSSS CS
    PTN_MK_N  19 ygkCvpnsgDC 29 
                  ++C+  +gDC
  KOO23603.1 328 SAACIKGHGDC 338
                 568******** PP

  == domain 5  score: 4.1 bits;  conditional E-value: 0.034
                 ------SS--B---EE-SSSS CS
    PTN_MK_N   9 kkaseCaewqygkCvpnsgDC 29 
                 ++as+ a   y++C+  +gDC
  KOO23603.1 351 QAASDGATPLYAACIKGHGDC 371
                 6789999999*********** PP

>> Draxin  Draxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.0   5.6    0.0028       4.6      10     165 ..     491     651 ..     481     665 .. 0.53

  Alignments for each domain:
  == domain 1  score: 7.0 bits;  conditional E-value: 0.0028
      Draxin  10 elalqkkraghhrregl..skkera...eagllserpleallraeddgtgleglspvrlemgppaalkerkevflgvklsyqerenkspgselkrkgrk 103
                 ++a+ kk+a+++ + +   + k+ra   +a+   + + e ++ a+d+g++  + s+ + e    a   ++ e + g+  +++ r ++  g+ +++++ +
  KOO23603.1 491 QQAP-KKKASKKAKAKPtgASKARApltSASAAASGSAEVAVPAGDEGVVGPAPSATADEALRVAMAASQYEGLIGAIEEHHARASE--GVLAEARAMR 586
                 2222.2222222222221144444411133444445556677788877776666665555555555566666677777777777766..4444566666 PP

      Draxin 104 hgrehkkksrrdkvrkkkgkalepepssl..lkdreafedqlqkasleeassplapvllalt.al 165
                 +  ++k+k+  +k+r+k+++++ +++ s   l +  ++  ++ +as+ee ++++ap   ++  a 
  KOO23603.1 587 ERLHKKRKQESQKLRRKHASEMMQASLSKlsLLEVTQSPPAAGSASAEEDPASVAPEAPSAPpAA 651
                 66666665666666666666665555444014455555555666668888888888766555444 PP

>> Prok-RING_1  Prokaryotic RING finger family 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.1   0.0    0.0063        10      27      44 ..      27      44 ..      24      52 .. 0.85
   2 ?   -1.3   0.0       1.3   2.2e+03      28      44 ..      61      77 ..      58      84 .. 0.81
   3 ?   -2.8   0.0       3.9   6.3e+03      28      43 ..     127     142 ..     125     148 .. 0.82
   4 ?   -2.9   0.0       4.3     7e+03      28      43 ..     160     175 ..     159     181 .. 0.81
   5 ?   -0.2   0.1      0.59   9.6e+02      28      44 ..     292     308 ..     289     315 .. 0.83
   6 ?   -0.6   0.0      0.78   1.3e+03      33      47 ..     330     344 ..     325     350 .. 0.81
   7 ?    0.6   0.0      0.32   5.3e+02      27      44 ..     357     374 ..     353     382 .. 0.83

  Alignments for each domain:
  == domain 1  score: 6.1 bits;  conditional E-value: 0.0063
  Prok-RING_1 27 gtpyHraCyekagkCvne 44
                  tp H aC +  g Cv+ 
   KOO23603.1 27 ATPLHAACIKGHGDCVQL 44
                 69*************975 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 1.3
  Prok-RING_1 28 tpyHraCyekagkCvne 44
                 tp   aC    g Cv+ 
   KOO23603.1 61 TPLYVACITGHGDCVQL 77
                 888889********975 PP

  == domain 3  score: -2.8 bits;  conditional E-value: 3.9
  Prok-RING_1  28 tpyHraCyekagkCvn 43 
                  tp   aC +  g Cv+
   KOO23603.1 127 TPLYAACDRGHGDCVQ 142
                  78888999999***87 PP

  == domain 4  score: -2.9 bits;  conditional E-value: 4.3
  Prok-RING_1  28 tpyHraCyekagkCvn 43 
                  tp   aC +  g Cv+
   KOO23603.1 160 TPLYAACDRGHGDCVQ 175
                  78888999999***87 PP

  == domain 5  score: -0.2 bits;  conditional E-value: 0.59
  Prok-RING_1  28 tpyHraCyekagkCvne 44 
                  tp   aC +  g+C++ 
   KOO23603.1 292 TPLYAACIKGHGSCLHL 308
                  888999********875 PP

  == domain 6  score: -0.6 bits;  conditional E-value: 0.78
  Prok-RING_1  33 aCyekagkCvneelh 47 
                  aC +  g Cv++ l 
   KOO23603.1 330 ACIKGHGDCVQQLLA 344
                  7********998765 PP

  == domain 7  score: 0.6 bits;  conditional E-value: 0.32
  Prok-RING_1  27 gtpyHraCyekagkCvne 44 
                   tp   aC +  g Cv+ 
   KOO23603.1 357 ATPLYAACIKGHGDCVQL 374
                  589999*********975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1118 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       786  (0.0438396); expected 358.6 (0.02)
Passed bias filter:                      372  (0.0207485); expected 358.6 (0.02)
Passed Vit filter:                        49  (0.002733); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.82u 0.28s 00:00:01.10 Elapsed: 00:00:00.42
# Mc/sec: 8006.36
//
Query:       KOO23604.1  [L=347]
Description: diphthine synthase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    6.7e-22   78.5   0.2      1e-21   77.8   0.2    1.3  1  TP_methylase  Tetrapyrrole (Corrin/Porphyrin) Methylases


Domain annotation for each model (and alignments):
>> TP_methylase  Tetrapyrrole (Corrin/Porphyrin) Methylases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   77.8   0.2   5.8e-26     1e-21       2     212 ..      38     273 ..      37     274 .. 0.73

  Alignments for each domain:
  == domain 1  score: 77.8 bits;  conditional E-value: 5.8e-26
  TP_methylase   2 lylVGvGpGdpellTvrAlralktadvvlgddsraleilldllaeeleleapmgkekepleeayeeiaealaealragkdVvllvsGDPlvygtgse 98 
                   ++l+G+G+ d e++T+++lra++++ +v+ ++  +++il   ++ +le   + + e+ p+e +  ei+ +l +a    +d+++lv GDP+ ++t+  
    KOO23604.1  38 FHLIGLGLADEEDITLKGLRAVQKCSAVYLEA--YTSIL-GVPRARLEEAWSIKIEEAPRELVESEIEPILERARH--EDIAMLVVGDPFGATTHCD 129
                   689*************************9777..55555.555554333333333344555555555555544444..56***************** PP

  TP_methylase  99 lvealrareagieveviPGvsslqaaaarlgiplteggevlsvl..lpglakeeereleallan....gdtlvll...................... 167
                   l+ ++r+   g+ ++v+   s+++a+ +  g+ l+ +ge+ s+    +   +++++ +++++an     +tl+ll                      
    KOO23604.1 130 LLARARE--LGVTTHVVHNASIMNAIGC-CGLQLYRFGETISIPffSQ--TWRPDSFYAKVAANrragLHTLALLdikvreptmislakgkkpeylp 221
                   **77777..**************98765.6999999999999997644..45578888888888888899999997777777766666665555555 PP

  TP_methylase 168 ...kaprk.laelaelL.......kea.lyddttpvavveragtedervvrgtleel 212
                      ++ r+ + +    L       +e  +++ + +++ v+r+g +d++vv+gtleel
    KOO23604.1 222 pryMSIRQaIGQ----LlaveaerAEGvCPP-EARAIGVSRVGHADQQVVTGTLEEL 273
                   554444423333....144444324445666.66*********************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (347 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       248  (0.0138323); expected 358.6 (0.02)
Passed bias filter:                      224  (0.0124937); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.23s 00:00:00.63 Elapsed: 00:00:00.37
# Mc/sec: 2774.47
//
Query:       KOO23605.1  [L=627]
Description: sodium sulfate symporter [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
      9e-25   87.6  22.6    1.5e-24   86.9  22.6    1.7  1  Na_sulph_symp  Sodium:sulfate symporter transmembrane region
    2.7e-22   79.4  23.2    2.7e-22   79.4  23.2    1.7  1  CitMHS         Citrate transporter
      5e-08   33.3   0.0     0.0041   17.1   0.0    2.1  2  SPX            SPX domain


Domain annotation for each model (and alignments):
>> Na_sulph_symp  Sodium:sulfate symporter transmembrane region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   86.9  22.6   2.6e-28   1.5e-24       4     466 ..     135     621 ..     132     627 .] 0.84

  Alignments for each domain:
  == domain 1  score: 86.9 bits;  conditional E-value: 2.6e-28
  Na_sulph_symp   4 laklllllvvlliil.llPa..pdgleskawrllaifiaaivglileplplavialialsllavligvla.......................... 70 
                    ++  ++ + v + +l l P+  pdg ++ ++r++ +++ +i  + +e+lp+ v++l+   l+ vl+ v +                          
     KOO23605.1 135 VWGVVASVLVACAVLlLTPLldPDGNNEFEKRCACVLLSIITLWLTEALPYFVTSLLVPVLV-VLGRVMPaepeehtgkhgdvqhdttddsgstpa 229
                    5777777766665550557555*******************************998765555.6777766789**********************9 PP

  Na_sulph_symp  71 ...akalsevl.sgfssdttlLvfaalliaaavektgLgkRiAlvlvkivGkrtliLgyalvladlllapatpsntAraggivfpvikslssafgs 162
                       a a +  l s f s ++lLv+a+l+ aa v    L+ R+A  l + +G  +l   ++lv+++l la ++   +  +++i+   ++ l++++  
     KOO23605.1 230 meaADAAKLLLsSMFGSPVILLVLAGLVAAAVVSRCQLELRLASALSEWLGRYPL--AFMLVIMQLGLATSMC-VSNVTAPIL--LLNVLTPLLRE 320
                    99855555555257**************************************996..6899999999998875.567889999..89999999999 PP

  Na_sulph_symp 163 epekqserkigaylmltvvqsasitsiaflTamApNllllglinsilgveitwasWflaaiptgvillllvplllyvlyppeikkkeeakavakte 258
                     p  +   + ++ l+l  + s  ++++ +  a  +N+++l+ ++   g++i ++ Wfl+a+p+  i lllv  ll  l  p+   + +  ++  ++
     KOO23605.1 321 MPGGS---RYAKALVLGLAFSCNLGGMLTPIASPQNAVALQALA-YRGATIGFGTWFLVALPIAEIGLLLVHGLLLLLLRPFD--CAQLPRISIEK 410
                    99885...589*****************************9998.9********************99999999988888875..55589999999 PP

  Na_sulph_symp 259 lkelGpltarekallilfvlllllWifgesln.....idattvaivvlvillllrvldWkDivkqktaWntllllgglialakllersgliewlgn 349
                     ++lG   +re ++l  ++   +lW++ +++       d ++v++  +v  + +  l+ +D   +   W  l l gg+ al    ++sgl++  ++
     KOO23605.1 411 KQKLG---RRELSMLCCVMATTVLWATLSFPPlhdtfGDPAVVGLALVVGSFGSGFLTKDDF--NGLNWHLLALIGGGNALGLAVSKSGLLHLASH 501
                    99999...7********************88833443344556666666666666***9975..7789*************************998 PP

  Na_sulph_symp 350 kltt.sls.glspavaiiiilslfvlvhylfaSatAttaallpillavaqaipgappllvalllalatslagfllpyatgpnpiv......fgagy 437
                    +l + +ls g     ++ + l+  +lv + f S t    + +p++++++  + ga p ++++ ++l+ s a + lp+++ pn+        +g  y
     KOO23605.1 502 SLLKaQLSlGGTSVWLLTAELVGAMLVITSFVSHTVAAIVTMPLIASIGAHA-GA-PAQIVFCCTLTCSAA-MALPMSSFPNVNSllaeddYGRAY 594
                    875515567777777777778888888899999887777778*****99988.99.7888999****9999.99****9998753334666999** PP

  Na_sulph_symp 438 lkvkdywrlGfilsiigllillllgalww 466
                    ++ +d+  +G++ s++  ++ ++l+  +w
     KOO23605.1 595 VNAADFVLVGLPASMLVSALSATLA--FW 621
                    **************99999988887..34 PP

>> CitMHS  Citrate transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   79.4  23.2   4.4e-26   2.7e-22       2     294 ..     176     560 ..     175     567 .. 0.74

  Alignments for each domain:
  == domain 1  score: 79.4 bits;  conditional E-value: 4.4e-26
                 xxxxxxxxxxxxxxxxxxxxx......xxxxxx...............................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
      CitMHS   2 vllileklrldvvallvlvll......vltiee...............................alsgiaspiillllgamiigaaleetGlfdrlaak 63 
                 +l+++e+l+  v++llv vl+        ++ee                               + s ++sp+ill+l++ + +a+++++ l  rla  
  KOO23605.1 176 TLWLTEALPYFVTSLLVPVLVvlgrvmPAEPEEhtgkhgdvqhdttddsgstpameaadaakllLSSMFGSPVILLVLAGLVAAAVVSRCQLELRLASA 274
                 79999**********999999999876333333666666677777777777888888999999999********************************* PP

                 xxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..... RF
      CitMHS  64 llrlaggkrd.llvllvlltallsafvsndgvvlimipivlslakrlkklppl...lliplalaaniggaltpiGtpttraaarpglslpnlll..... 153
                 l  + g+ +   +++++ l    s+ vsn+++ ++++ ++ +l +++ + +++   l++ la+++n+gg+ltpi  p            +n ++     
  KOO23605.1 275 LSEWLGRYPLaFMLVIMQLGLATSMCVSNVTAPILLLNVLTPLLREMPGGSRYakaLVLGLAFSCNLGGMLTPIASP------------QNAVAlqala 361
                 **********99999*****************************************99*******************............7777777766 PP

                 ....................xxxxxxxx.................................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
      CitMHS 154 ....................lalllvgl.................................lplvllfmfgvalalpvnapkvkkqkaiieaiarsllp 199
                                     ++l    l                                 l +++ +m++++l                         
  KOO23605.1 362 yrgatigfgtwflvalpiaeIGL----LlvhgllllllrpfdcaqlprisiekkqklgrreLSMLCCVMATTVL------------------------- 431
                 66666555554443333333111....01111112222333333333333333333333333333333333333......................... PP

                 xxxxxxxx....................................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xx.....x.xxxxxxxxxx RF
      CitMHS 200 vatillla....................................ykkveWsvlllfaGvfllvgaleqtGilealadll.ga.....g.gplvalalvl 255
                        +                                    ++  +W +l l++G   l+ a++++G+l++ +++l +a     g  ++++ a ++
  KOO23605.1 432 -------WatlsfpplhdtfgdpavvglalvvgsfgsgfltkddFNGLNWHLLALIGGGNALGLAVSKSGLLHLASHSLlKAqlslgGtSVWLLTAELV 523
                 .......1344444444444444444444558999********************************************66689875345545447779 PP

                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
      CitMHS 256 gliallsafisnvavaalmapialgmapalgllspspla 294
                 g++ ++++f+s + +a++++p+++++ +++g  +p +++
  KOO23605.1 524 GAMLVITSFVSHTVAAIVTMPLIASIGAHAG--APAQIV 560
                 99999********************999777..344344 PP

>> SPX  SPX domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.1   0.0   5.6e-06     0.033       1      35 [.       2      36 ..       2      44 .. 0.86
   2 !   17.1   0.0   6.9e-07    0.0041     348     378 ..      46      76 ..      45      79 .. 0.89

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 5.6e-06
         SPX  1 MKFakeLeenlvpEWrdaYldYkqLKKlIkkvqre 35
                +KF++     ++ EWr++Yl Y + K   k++   
  KOO23605.1  2 VKFGQVVDIRAIAEWRQHYLSYEKMKRIMKQIPSS 36
                588888888999****************9999874 PP

  == domain 2  score: 17.1 bits;  conditional E-value: 6.9e-07
         SPX 348 elLKsYqeLNrtAFrKIlKKfDKvtaltask 378
                 e L s+  +N +++rKI KK DK  + t+++
  KOO23605.1  46 ESLRSFVLVNHEGIRKIVKKLDKLIGGTPRQ 76 
                 5799*******************98877765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (627 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       749  (0.0417759); expected 358.6 (0.02)
Passed bias filter:                      414  (0.0230911); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.64u 0.28s 00:00:00.92 Elapsed: 00:00:00.43
# Mc/sec: 4339.46
//
Query:       KOO23606.1  [L=1124]
Description: excinuclease ABC subunit b [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.9e-26   91.5   0.0    4.8e-24   85.0   0.0    2.4  2  UvrC_HhH_N  UvrC Helix-hairpin-helix N-terminal
    4.1e-09   36.9   0.0    1.2e-08   35.4   0.0    1.8  1  HHH_5       Helix-hairpin-helix domain
    2.6e-08   34.1   0.0    5.7e-08   32.9   0.0    1.4  1  ResIII      Type III restriction enzyme, res subunit
    6.9e-06   26.1   0.1    3.1e-05   24.0   0.0    2.1  2  HHH_2       Helix-hairpin-helix motif
    0.00012   21.8   0.2    0.00066   19.5   0.0    2.4  2  AAA_30      AAA domain
     0.0011   18.8   0.0      0.002   17.9   0.0    1.3  1  DEAD        DEAD/DEAH box helicase
  ------ inclusion threshold ------
      0.013   15.5   0.4       0.06   13.4   0.4    2.2  1  FIST        FIST N domain
      0.071   13.4   0.0       0.19   12.0   0.0    1.7  1  HHH_3       Helix-hairpin-helix motif
       0.11   11.7   0.0       0.18   10.9   0.0    1.2  1  DAP3        Mitochondrial ribosomal death-associated protein 


Domain annotation for each model (and alignments):
>> UvrC_HhH_N  UvrC Helix-hairpin-helix N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   85.0   0.0   2.4e-27   4.8e-24       2     116 ..     161     305 ..     160     331 .. 0.96
   2 ?    4.0   0.0     0.021        43     135     153 ..     397     415 ..     370     416 .. 0.93

  Alignments for each domain:
  == domain 1  score: 85.0 bits;  conditional E-value: 2.4e-27
                 HHTT-SS---EEEEEEEEEETTTEEEEEEEEEETTEE-GGG-EEEEEE.-SS--HHHHHHHHHHHHHTTS............................. CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.......................... RF
  UvrC_HhH_N   2 ellglkekpkriecyDiShiqgtntvgsmvvfedgkpkkseyRkfkiksvkegdDyaamrevlrRrfkrllke.......................... 74 
                 + lgl+ +p+ +e++D+Sh+ g++tv s  v+ dg+p+  +++++ i++  ++dD+aa+ e lrRrf  + +                           
  KOO23606.1 161 AWLGLDGPPRLLEAFDVSHFGGEYTVVSSAVLVDGEPAPARHQRWPIQRAPAADDCAALVEGLRRRFAPAPQVgcgkvggtgggeledddgaastawsr 259
                 5699********************************************9999*****************9988************************** PP

                 .....---SEEEESSSHHHHHHHHHHHHHTT-.---EEEEES.... CS
                 ...xxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxx RF
  UvrC_HhH_N  75 ...fsklPdLiliDGGkgqlnaakevleelgl.kipvvglaKdkkr 116
                    +++lP LiliDGGkgql+aa+++l+ ++  ++p+++laK++++
  KOO23606.1 260 sptSRPLPHLILIDGGKGQLHAARSALATTEArHVPLIALAKGNET 305
                 ********************************9*********8865 PP

  == domain 2  score: 4.0 bits;  conditional E-value: 0.021
                 T-HHHHHHHHHHHHHHHHH CS
                 xxxxxxxxxxxxxxxxxxx RF
  UvrC_HhH_N 135 ssealkllqrirdeaHrfA 153
                 +s+ l ll r rdeaH +A
  KOO23606.1 397 ESKPLLLLRRARDEAHATA 415
                 578899**********988 PP

>> HHH_5  Helix-hairpin-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.4   0.0   6.1e-12   1.2e-08       7      56 ..     438     486 ..     432     487 .. 0.93

  Alignments for each domain:
  == domain 1  score: 35.4 bits;  conditional E-value: 6.1e-12
                 STT--HHHHHHHHTTT--SHHHHHHS-HHHHHTSTTS-HHHHHHHHHHHH CS
       HHH_5   7 vsGiGpktAlallsaGiesvedlaaadveeLakipGiGkktAeriilelk 56 
                  sGiG+ +  al ++ ++++++l++adve+L ++pGiG ++A +i+  l+
  KOO23606.1 438 TSGIGATRRAALFDH-FGTYAALCEADVEALRRVPGIGRRLATSIVAGLQ 486
                 59*************.*****************************99887 PP

>> ResIII  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.9   0.0   2.9e-11   5.7e-08       7     137 ..     690     815 ..     685     816 .. 0.79

  Alignments for each domain:
  == domain 1  score: 32.9 bits;  conditional E-value: 2.9e-11
                 HHHHHHHHHT........TTSEEEEEESTTSTHHHHHHHHHHHH-S.....-EEEEESSHHHHHHHHHHGGGGTGG....GEEEESSS-B--....... CS
      ResIII   7 yQeeaienlleklks..krdkrglikmaTGtGKTlvaaklierllkkgkeekflflvprkslleqtleefkkflseaykeigkkvsgdkkkakekdstn 103
                  Q  ++e+l+ +l +   + +r+++k aTGtGKT+ +a+li+   +      +l+l+p+k l  q+  e++ f++ ++  ++ +vs   + + e+ + +
  KOO23606.1 690 EQRGVVERLATSLAApkVGPRRLVLKGATGTGKTFAMAQLIATTGR-----PTLVLAPNKVLAAQLWAELRGFFPHNA--VEYFVSYYDYYRPESYQPT 781
                 577777777777765557788*********************9998.....8***********************987..5555555444444566669 PP

                 -SEEEEEHHHHHHTH........HHHTTT-SEEE CS
      ResIII 104 kkilvttiqsldadseeeeeeseellrdrfdvii 137
                 +++++ ++ s+++d+++ + + + +l +r dv++
  KOO23606.1 782 ADVYLQKTASVNEDIDRLRHAATAALLSRTDVVV 815
                 9999999999999996667777777777777666 PP

>> HHH_2  Helix-hairpin-helix motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.0   0.0   1.6e-08   3.1e-05      10      57 ..     440     487 ..     431     492 .. 0.87
   2 ?   -2.4   0.0       2.7   5.3e+03      24      39 ..     794     809 ..     790     814 .. 0.81

  Alignments for each domain:
  == domain 1  score: 24.0 bits;  conditional E-value: 1.6e-08
       HHH_2  10 hVGektAklLakrFksldaLkkasleeLlevddiGeeiAqsivefFen 57 
                  +G++   +L  +F++  aL +a++e L  v++iG + A+siv  ++ 
  KOO23606.1 440 GIGATRRAALFDHFGTYAALCEADVEALRRVPGIGRRLATSIVAGLQR 487
                 689999999*********************************987665 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 2.7
       HHH_2  24 ksldaLkkasleeLle 39 
                 +++d+L++a +  Ll+
  KOO23606.1 794 EDIDRLRHAATAALLS 809
                 689******9999886 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.0       2.6   5.2e+03      71     102 ..      25      74 ..       4      76 .. 0.48
   2 !   19.5   0.0   3.3e-07   0.00066       4      67 ..     689     755 ..     687     816 .. 0.75

  Alignments for each domain:
  == domain 1  score: -3.0 bits;  conditional E-value: 2.6
      AAA_30  71 stiakllkrlk..................grarlepgtllivDEagmvdt 102
                 s + ++ +++                   + ++l ++  l vDE g v t
  KOO23606.1  25 SAVRQIHHAQHaqsaellilqaeleaanpRLTDLPEELYLTVDEDGIVRT 74 
                 33333333333333445555555555554334444555666777666655 PP

  == domain 2  score: 19.5 bits;  conditional E-value: 3.3e-07
      AAA_30   4 aeQaaaveallts......gdrvavltGpAGtGKttalkalreaweaaggrviglAptgkaAkvLaeelg 67 
                 aeQ+ +ve+l+ts      g r  vl+G+ GtGKt+a+++l   +++ g++ ++lAp++  A++L +el 
  KOO23606.1 689 AEQRGVVERLATSlaapkvGPRRLVLKGATGTGKTFAMAQL---IATTGRPTLVLAPNKVLAAQLWAELR 755
                 56777777777762222222346799***********9865...677899*************9987664 PP

>> DEAD  DEAD/DEAH box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.9   0.0     1e-06     0.002      14      75 ..     709     762 ..     691     834 .. 0.77

  Alignments for each domain:
  == domain 1  score: 17.9 bits;  conditional E-value: 1e-06
                 TCEEEEEESTTSSHHHHHHHHHHHHHHHSTTSTS-EEEEEESSHHHHHHHHHHHHHHTTTST CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD  14 ggdvlvaaeTGsGKTlaflipvlqivyetkgktgpkalivePtreLaeqtlnnlkkfkkyid 75 
                  + ++++++TG+GKT a++  +         +tg  +l+++P + La q   +l+ f+ +  
  KOO23606.1 709 PRRLVLKGATGTGKTFAMAQLIA--------TTGRPTLVLAPNKVLAAQLWAELRGFFPHNA 762
                 5778999*********9665555........788899*****************99988644 PP

>> FIST  FIST N domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.4     3e-05      0.06      10      89 ..     212     284 ..     209     382 .. 0.59

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 3e-05
        FIST  10 easdleallealrealpgapliGcstageiasegleledgvvalalasa............daageelakalpkllllladglssneeelle 89 
                  a+d +al+e+lr++++ ap +Gc   g+ ++++le +dg   +a+ s+                               dg + +     +
  KOO23606.1 212 AADDCAALVEGLRRRFAPAPQVGCGKVGGTGGGELEDDDGAASTAW-SRsptsrplphlilI------------------DGGKGQLHAARS 284
                 478999***********************97668888888655555.222333333333330..................333222221111 PP

>> HHH_3  Helix-hairpin-helix motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   9.5e-05      0.19      10      32 ..     461     483 ..     458     487 .. 0.93

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 9.5e-05
       HHH_3  10 tAsaeeLqklpGlgpklAknIva 32 
                  A++e L+++pG+g +lA  Iva
  KOO23606.1 461 EADVEALRRVPGIGRRLATSIVA 483
                 699******************97 PP

>> DAP3  Mitochondrial ribosomal death-associated protein 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0     9e-05      0.18      23      46 ..     709     732 ..     693     752 .. 0.86

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 9e-05
                 --EEEEE-SSSSSTTTTHHHHHHH CS
        DAP3  23 vkrlvltGekgsGKSvlLlqalay 46 
                   rlvl+G +g+GK+  ++q++a 
  KOO23606.1 709 PRRLVLKGATGTGKTFAMAQLIAT 732
                 579******************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1124 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       513  (0.0286129); expected 358.6 (0.02)
Passed bias filter:                      333  (0.0185733); expected 358.6 (0.02)
Passed Vit filter:                        51  (0.00284455); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.74u 0.27s 00:00:01.01 Elapsed: 00:00:00.42
# Mc/sec: 7994.78
//
Query:       KOO23607.1  [L=415]
Description: 26s proteasome non-ATPase regulatory subunit 11, partial [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.1e-31  108.7   4.7    2.5e-31  108.4   2.0    2.3  2  RPN6_N        26S proteasome regulatory subunit RPN6 N-termin
    2.9e-16   59.9   0.9    5.4e-15   55.8   0.1    3.0  3  PCI           PCI domain
    8.1e-11   41.5   1.2    8.1e-11   41.5   1.2    2.2  2  RPN6_C_helix  26S proteasome subunit RPN6 C-terminal helix do
    1.1e-06   28.8   2.9      0.046   14.0   1.5    3.1  3  TPR_12        Tetratricopeptide repeat
      0.004   16.9   0.7      0.018   14.8   0.1    2.3  2  RPN7          26S proteasome subunit RPN7
  ------ inclusion threshold ------
      0.013   15.6   2.9       0.48   10.5   0.0    3.7  3  MIT           MIT (microtubule interacting and transport) dom
       0.33   10.9   3.4        3.2    7.7   0.2    3.1  3  TPR_1         Tetratricopeptide repeat
       0.85    9.9   3.9         38    4.7   0.1    3.6  4  TPR_2         Tetratricopeptide repeat
        1.5    9.4   7.9       0.95   10.0   0.8    3.9  5  TPR_19        Tetratricopeptide repeat
        1.7    9.0   9.5        9.4    6.6   2.3    3.5  3  TPR_20        Tetratricopeptide repeat
        5.2    6.7   8.3       0.59    9.8   0.2    3.1  3  TPR_21        Tetratricopeptide repeat-like domain


Domain annotation for each model (and alignments):
>> RPN6_N  26S proteasome regulatory subunit RPN6 N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  108.4   2.0   1.6e-34   2.5e-31      20     116 ..      28     123 ..       9     124 .. 0.87
   2 ?   -0.1   0.0      0.73   1.2e+03      59      74 ..     169     184 ..     133     218 .. 0.61

  Alignments for each domain:
  == domain 1  score: 108.4 bits;  conditional E-value: 1.6e-34
      RPN6_N  20 lskkskedeealreqeqalleLgelyrdqkkaeeLaelikesrsflssiaKaKtaKlvrtLldlfskipnslelqievlkesiewakeekriFLrqs 116
                 +++++ +d+++l ++e+a+  L+e y+++ +a++L+ l+   r+f++ +aKaKtaK+vrtL+d+++kipn+l lq++++++si+w+k+ekr+FLrq+
  KOO23607.1  28 VASQA-TDTDSLVAKEEAIHLLSEHYAETAQADKLVALVAALRPFFAVVAKAKTAKIVRTLIDQLAKIPNTLPLQMQLCRDSIAWCKAEKRSFLRQR 123
                 33333.4556899***********************************************************************************8 PP

  == domain 2  score: -0.1 bits;  conditional E-value: 0.73
      RPN6_N  59 kesrsflssiaKaKta 74 
                 + +++ l +++KaK++
  KOO23607.1 169 SATHHALRNLPKAKAS 184
                 3456778889999876 PP

>> PCI  PCI domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.1   0.0      0.83   1.4e+03      38      64 ..      75     101 ..      44     103 .. 0.79
   2 ?   -0.2   0.0       0.9   1.5e+03      10      62 ..     137     186 ..     128     193 .. 0.65
   3 !   55.8   0.1   3.3e-18   5.4e-15       2     104 ..     280     382 ..     279     383 .. 0.97

  Alignments for each domain:
  == domain 1  score: -0.1 bits;  conditional E-value: 0.83
                 HHHHHHHHHHHHHHHHHHHCESEEEHH CS
         PCI  38 llesLekkvrerllrqvskiyssisle 64 
                 + +    k+ ++l+ q++ki ++++l+
  KOO23607.1  75 VAKAKTAKIVRTLIDQLAKIPNTLPLQ 101
                 555556789999999999999999876 PP

  == domain 2  score: -0.2 bits;  conditional E-value: 0.9
                 HHHTSHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHCESEEE CS
         PCI  10 lrsgnlsgfseelkdleeelladdglaqllesLekkvrerllrqvskiyssis 62 
                 +++  l+  +e+++++ ++l +++ l +    L++ +++++lr + k   s++
  KOO23607.1 137 MYTDALALLDELVREV-KKLDDKPLLVE--INLVESATHHALRNLPKAKASLT 186
                 4444466666777777.44444444444..88999999999988877666665 PP

  == domain 3  score: 55.8 bits;  conditional E-value: 3.3e-18
                 HHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHCESEEEHHHHHHHHTSSHHHHHHHHHHHHHTTSSSEEEETTTTE CS
         PCI   2 sysdllkalrsgnlsgfseelkdleeelladdglaqllesLekkvrerllrqvskiyssislerlaklldlsvdevEkilvklIrdgeirakidqesgi 100
                 +++++  a + ++l +f+++l  + ++l ad+ ++ +l  L++ + ++++++++++ys ++ +++a+  +l+ ++vE+ l+++I d+++r+ +d  +g+
  KOO23607.1 280 AMRAIATAHQQRSLIEFETALSTHAAHLTADPIISNHLAALYDMLLQENICRIIEPYSVVETAHIATVMKLPLEKVEQKLSQMILDKKFRGILDAGAGC 378
                 688999999****************************************************************************************** PP

                 EEEC CS
         PCI 101 vvfk 104
                 +v+ 
  KOO23607.1 379 LVVY 382
                 *986 PP

>> RPN6_C_helix  26S proteasome subunit RPN6 C-terminal helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.4   0.2      0.61     1e+03       3      15 ..     136     148 ..     136     148 .. 0.88
   2 !   41.5   1.2   4.9e-14   8.1e-11       1      27 []     387     413 ..     387     413 .. 0.97

  Alignments for each domain:
  == domain 1  score: -0.4 bits;  conditional E-value: 0.61
  RPN6_C_helix   3 ktYeaALeTIknm 15 
                   k+Y  AL +++++
    KOO23607.1 136 KMYTDALALLDEL 148
                   89*****999876 PP

  == domain 2  score: 41.5 bits;  conditional E-value: 4.9e-14
  RPN6_C_helix   1 kDktYeaALeTIknmgkVVDsLYeKAa 27 
                   +D tY+ ALeT++nm+kVVD+L  KA+
    KOO23607.1 387 VDTTYDEALETLGNMSKVVDALNVKAN 413
                   7************************96 PP

>> TPR_12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.0   1.5   2.8e-05     0.046       8      75 ..     127     192 ..     121     194 .. 0.94
   2 !   12.5   0.0   8.1e-05      0.13       3      41 ..     203     241 ..     201     250 .. 0.84
   3 ?   -3.4   0.0       7.9   1.3e+04      19      25 ..     391     397 ..     389     404 .. 0.66

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 2.8e-05
      TPR_12   8 nlaavlrrlgrydeAlellekaleiarrllGpdhpltattlrnLgrlyralgryeeAlelleealaia 75 
                 +laa+l++ + y++Al+ll++ ++ +++l  +d+pl++++    + +++al ++ +A + l+ a  +a
  KOO23607.1 127 RLAALLLESKMYTDALALLDELVREVKKL--DDKPLLVEINLVESATHHALRNLPKAKASLTSARTAA 192
                 69***************************..*****************************99998776 PP

  == domain 2  score: 12.5 bits;  conditional E-value: 8.1e-05
      TPR_12   3 atalnnlaavlrrlgrydeAlellekaleiarrllGpdh 41 
                 a++ +n + ++++ ++y  A++++ +ale + ++  p  
  KOO23607.1 203 AQIDVNAGIIHAEEKDYKTAFSYFYEALENFDSINSPRG 241
                 7888999**********************9988776665 PP

  == domain 3  score: -3.4 bits;  conditional E-value: 7.9
      TPR_12  19 ydeAlel 25 
                 ydeAle 
  KOO23607.1 391 YDEALET 397
                 5555554 PP

>> RPN7  26S proteasome subunit RPN7
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.0      0.84   1.4e+03      52      73 ..      41      62 ..      16      88 .. 0.66
   2 !   14.8   0.1   1.1e-05     0.018      79     161 ..     161     251 ..     122     256 .. 0.86

  Alignments for each domain:
  == domain 1  score: -1.1 bits;  conditional E-value: 0.84
                HHHHHHHHHTCCCC--SHHHHH CS
        RPN7 52 leeAlkaysrireyctslkhki 73
                +eeA+ ++s+ + ++ +++  +
  KOO23607.1 41 KEEAIHLLSEHYAETAQADKLV 62
                4455555555555554444444 PP

  == domain 2  score: 14.8 bits;  conditional E-value: 1.1e-05
                 HHHHHHHTT-HHHHHHHHHHHHCSSS---.........HHHHHHHHHHHHHHHHHTT-HHHHHHHHCTS-GGGT.TTT--HHHHHHHHHHH CS
        RPN7  79 lirvaiffndwdlvskylekakellekggd........werknrlkvyeGlallairkfkeAaellldilstftskellsyedlavyavlc 161
                 l+++++     +++ ++l kak++l ++           + ++++ v +G+++++ +++k+A + + ++l+ f+s +    ed + y++l+
  KOO23607.1 161 LVEINLVESATHHALRNLPKAKASLTSARTaanaiycpPQLQAQIDVNAGIIHAEEKDYKTAFSYFYEALENFDSINSPRGEDCVKYMLLT 251
                 67888888889999*************98899999999999999*****************************986666666666666665 PP

>> MIT  MIT (microtubule interacting and transport) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.3   0.1      0.48   7.8e+02       6      26 ..      27      47 ..      26      50 .. 0.89
   2 ?    2.2   0.0      0.12   1.9e+02      25      45 ..     136     157 ..     135     164 .. 0.78
   3 ?   10.5   0.0    0.0003      0.48      12      40 ..     211     240 ..     202     256 .. 0.76

  Alignments for each domain:
  == domain 1  score: 0.3 bits;  conditional E-value: 0.48
         MIT  6 elvkkAveeDnagnyeeAlel 26
                +++++A++ D+    eeA++l
  KOO23607.1 27 KVASQATDTDSLVAKEEAIHL 47
                5799**************997 PP

  == domain 2  score: 2.2 bits;  conditional E-value: 0.12
         MIT  25 elYkealelLlqalke.kneer 45 
                 ++Y++al lL ++++e k+  +
  KOO23607.1 136 KMYTDALALLDELVREvKKLDD 157
                 68************98655444 PP

  == domain 3  score: 10.5 bits;  conditional E-value: 0.0003
         MIT  12 veeDnagnyeeAlelYkealelLlqalk.e 40 
                 +   ++++y++A++++ eale +  + + +
  KOO23607.1 211 IIHAEEKDYKTAFSYFYEALENFDSINSpR 240
                 556689*****************9887654 PP

>> TPR_1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.4   0.0     0.096   1.6e+02       6      24 ..     127     145 ..     123     147 .. 0.86
   2 ?    7.7   0.2     0.002       3.2       8      29 ..     210     231 ..     207     233 .. 0.92
   3 ?   -2.4   0.0         3   4.9e+03      17      22 ..     391     396 ..     391     398 .. 0.75

  Alignments for each domain:
  == domain 1  score: 2.4 bits;  conditional E-value: 0.096
                 HHHHHHHHTT-HHHHHHHH CS
       TPR_1   6 nlGnayfklgkydeAleyy 24 
                 +l++++++ ++y +Al+  
  KOO23607.1 127 RLAALLLESKMYTDALALL 145
                 89*************9865 PP

  == domain 2  score: 7.7 bits;  conditional E-value: 0.002
                 HHHHHHTT-HHHHHHHHHHHHH CS
       TPR_1   8 GnayfklgkydeAleyyekALe 29 
                 G ++ + ++y+ A  y+ +ALe
  KOO23607.1 210 GIIHAEEKDYKTAFSYFYEALE 231
                 999******************8 PP

  == domain 3  score: -2.4 bits;  conditional E-value: 3
                 HHHHHH CS
       TPR_1  17 ydeAle 22 
                 ydeAle
  KOO23607.1 391 YDEALE 396
                 788876 PP

>> TPR_2  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.7   0.1     0.023        38       6      29 ..     127     150 ..     124     154 .. 0.91
   2 ?   -2.0   0.0       3.3   5.4e+03      10      24 ..     171     185 ..     166     189 .. 0.79
   3 ?    4.1   0.1     0.038        62       6      29 ..     208     231 ..     207     234 .. 0.90
   4 ?   -3.3   0.0       8.8   1.4e+04      17      22 ..     391     396 ..     391     398 .. 0.71

  Alignments for each domain:
  == domain 1  score: 4.7 bits;  conditional E-value: 0.023
       TPR_2   6 nlGlayyklgdyeeAleafekAle 29 
                 +l+ ++++++ y +Al+++++ ++
  KOO23607.1 127 RLAALLLESKMYTDALALLDELVR 150
                 799****************99876 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 3.3
       TPR_2  10 ayyklgdyeeAleaf 24 
                  + +l ++ +A++ +
  KOO23607.1 171 THHALRNLPKAKASL 185
                 578899999999876 PP

  == domain 3  score: 4.1 bits;  conditional E-value: 0.038
       TPR_2   6 nlGlayyklgdyeeAleafekAle 29 
                 n G ++++ +dy+ A  +f +Ale
  KOO23607.1 208 NAGIIHAEEKDYKTAFSYFYEALE 231
                 6799***************99987 PP

  == domain 4  score: -3.3 bits;  conditional E-value: 8.8
       TPR_2  17 yeeAle 22 
                 y+eAle
  KOO23607.1 391 YDEALE 396
                 778876 PP

>> TPR_19  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.2       8.5   1.4e+04      10      23 ..      44      57 ..      42      68 .. 0.43
   2 ?   10.0   0.8   0.00058      0.95      28      55 ..     125     152 ..     120     158 .. 0.85
   3 ?   -2.1   0.0       3.4   5.6e+03      37      52 ..     174     189 ..     171     196 .. 0.77
   4 ?    0.4   0.0       0.6   9.8e+02       3      19 ..     215     231 ..     213     244 .. 0.89
   5 ?   -1.8   0.0       2.8   4.6e+03       7      17 ..     391     401 ..     389     407 .. 0.72

  Alignments for each domain:
  == domain 1  score: -3.3 bits;  conditional E-value: 8.5
      TPR_19 10 Alalleqalqedpk 23
                A+ ll++ ++e ++
  KOO23607.1 44 AIHLLSEHYAETAQ 57
                44444444333333 PP

  == domain 2  score: 10.0 bits;  conditional E-value: 0.00058
      TPR_19  28 rllLAeallalgqldeAealLdalpeed 55 
                  ++LA +ll+++ +++A alLd+l +e 
  KOO23607.1 125 EARLAALLLESKMYTDALALLDELVREV 152
                 4567*******************98875 PP

  == domain 3  score: -2.1 bits;  conditional E-value: 3.4
      TPR_19  37 algqldeAealLdalp 52 
                 al +l +A+a L  + 
  KOO23607.1 174 ALRNLPKAKASLTSAR 189
                 6788999999997765 PP

  == domain 4  score: 0.4 bits;  conditional E-value: 0.6
      TPR_19   3 aegdyaeAlalleqalq 19 
                 +e+dy  A +++ +al+
  KOO23607.1 215 EEKDYKTAFSYFYEALE 231
                 799*********99986 PP

  == domain 5  score: -1.8 bits;  conditional E-value: 2.8
      TPR_19   7 yaeAlalleqa 17 
                 y+eAl+ l ++
  KOO23607.1 391 YDEALETLGNM 401
                 67777777666 PP

>> TPR_20  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6   2.3    0.0058       9.4       3      62 ..      16      78 ..      14     107 .. 0.73
   2 ?    5.1   0.2     0.017        28      26      57 ..     126     157 ..     122     164 .. 0.88
   3 ?   -2.1   0.0       3.2   5.2e+03      23      50 ..     202     231 ..     181     240 .. 0.60

  Alignments for each domain:
  == domain 1  score: 6.6 bits;  conditional E-value: 0.0058
      TPR_20  3 adapelaeleaalaanpddldarl..dlAlallaagryeeA.leqLleilkrdrkweddaark 62
                +++p++aelea++a++ +d d  +  + A +ll++   e A +++L++++++ r +    a+ 
  KOO23607.1 16 SASPSIAELEAKVASQATDTDSLVakEEAIHLLSEHYAETAqADKLVALVAALRPFFAVVAKA 78
                689***********9999998765225677777777777775577888887777765444444 PP

  == domain 2  score: 5.1 bits;  conditional E-value: 0.017
      TPR_20  26 ldlAlallaagryeeAleqLleilkrdrkwed 57 
                   lA +ll+ + y +Al++L e++++ +k +d
  KOO23607.1 126 ARLAALLLESKMYTDALALLDELVREVKKLDD 157
                 579**********************9988766 PP

  == domain 3  score: -2.1 bits;  conditional E-value: 3.2
      TPR_20  23 darldlAl..allaagryeeAleqLleilk 50 
                 +a++d+      +++++y+ A++ ++e l+
  KOO23607.1 202 QAQIDVNAgiIHAEEKDYKTAFSYFYEALE 231
                 555544330033444566667666666655 PP

>> TPR_21  Tetratricopeptide repeat-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   1.6      0.93   1.5e+03      34      83 ..      12      67 ..       8      87 .. 0.63
   2 ?    9.8   0.2   0.00036      0.59     106     138 ..     115     147 ..     102     153 .. 0.83
   3 ?   -1.1   0.0       0.8   1.3e+03     167     186 ..     389     410 ..     365     415 .] 0.67

  Alignments for each domain:
  == domain 1  score: -1.3 bits;  conditional E-value: 0.93
      TPR_21 34 eqaeeAsalYqqlqeaveakdaa.....kakeaaeeladeyggtaYaa.laaLllA 83
                +q ++As    +l+++v++++++     + +ea++ l ++y++ta a+ l aL++A
  KOO23607.1 12 AQLQSASPSIAELEAKVASQATDtdslvAKEEAIHLLSEHYAETAQADkLVALVAA 67
                56666777777777766654444334434556666677777777766424455555 PP

  == domain 2  score: 9.8 bits;  conditional E-value: 0.00036
      TPR_21 106 akdeelkalarlRLarvllaekkydeAlktLea 138
                 +k   l++ ++ RLa++ll+ k y +Al++L++
  KOO23607.1 115 EKRSFLRQRVEARLAALLLESKMYTDALALLDE 147
                 44556888899********************87 PP

  == domain 3  score: -1.1 bits;  conditional E-value: 0.8
      TPR_21 167 aaYqaAlaaleeka..rellql 186
                 + Y++Al++l++ +   ++l++
  KOO23607.1 389 TTYDEALETLGNMSkvVDALNV 410
                 4455555555555544455555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (415 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       947  (0.0528195); expected 358.6 (0.02)
Passed bias filter:                      583  (0.0325172); expected 358.6 (0.02)
Passed Vit filter:                        61  (0.00340231); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.52u 0.26s 00:00:00.78 Elapsed: 00:00:00.42
# Mc/sec: 2988.50
//
Query:       KOO23608.1  [L=234]
Description: expressed unknown protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (234 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       183  (0.0102069); expected 358.6 (0.02)
Passed bias filter:                      182  (0.0101512); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.40u 0.23s 00:00:00.63 Elapsed: 00:00:00.39
# Mc/sec: 1790.26
//
Query:       KOO23609.1  [L=132]
Description: hypothetical protein Ctob_001573 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    9.5e-12   44.9   0.9    1.7e-11   44.1   0.9    1.5  1  DUF3493   Low psii accumulation1 / Rep27


Domain annotation for each model (and alignments):
>> DUF3493  Low psii accumulation1 / Rep27
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.1   0.9   9.7e-16   1.7e-11       8      78 ..       2      66 ..       1      67 [. 0.94

  Alignments for each domain:
  == domain 1  score: 44.1 bits;  conditional E-value: 9.7e-16
     DUF3493  8 raEakaPfRglRlfl.YlafaaSaliGalifllrllaaragaesapeleealenlaiqvgavalfvfLlrle 78
                 aE++aPfR+ R+f+ Y a +a+a i+ ++++lrl+  +       +      nl +++g++ + vf+lr +
  KOO23609.1  2 TAEVRAPFRQARIFFlYPATIAAASIASYVSVLRLVGQK-------DAMADSGNLLVNLGIITAAVFCLRAD 66
                79**********9744***********************.......999999****************9987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (132 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       428  (0.0238719); expected 358.6 (0.02)
Passed bias filter:                      333  (0.0185733); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.23s 00:00:00.60 Elapsed: 00:00:00.39
# Mc/sec: 1027.00
//
Query:       KOO23610.1  [L=271]
Description: hypothetical protein Ctob_001572 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.5e-08   34.2   0.0    3.3e-08   33.8   0.0    1.2  1  PseudoU_synth_2  RNA pseudouridylate synthase


Domain annotation for each model (and alignments):
>> PseudoU_synth_2  RNA pseudouridylate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.8   0.0   1.9e-12   3.3e-08       7     103 ..      55     194 ..      50     241 .. 0.70

  Alignments for each domain:
  == domain 1  score: 33.8 bits;  conditional E-value: 1.9e-12
  PseudoU_synth_2   7 KPagvpvqpeak.dgsekeke..ttatssraeeekkelklvhRLDkatsGllllAksseaanklakaf...eerkvrKkYlalvf......... 85 
                      KPagv ++   + dg++  ++  t a +       + + +++RLDka+ Gllll+++++++++l +     e  +v K+Y ++++         
       KOO23610.1  55 KPAGVLSTTLPTsDGVNILQHntTLARQVALTAAGRPVVPIGRLDKASRGLLLLTTDAALCARLLRPGrgvEGSSVDKEYHVVTRrrladsela 148
                      9****999988885555544400444555555999*****************************9865665777899*******9777777777 PP

  PseudoU_synth_2  86 ...........gapeeeegaikkkiskd.................t 103
                                 +   ++ +a++++++++                 +
       KOO23610.1 149 slaagveisvpKSGASARAATRACVVERlqaggwaealdrgvdilA 194
                      7777777666655555555555555554555555555544444440 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (271 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       431  (0.0240393); expected 358.6 (0.02)
Passed bias filter:                      291  (0.0162307); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.24s 00:00:00.63 Elapsed: 00:00:00.37
# Mc/sec: 2202.06
//
Query:       KOO23611.1  [L=592]
Description: prenylcysteine oxidase-like protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.6e-37  129.5   0.0    2.5e-36  125.6   0.0    2.3  1  Prenylcys_lyase  Prenylcysteine lyase
    2.4e-09   37.0   0.4    0.00034   20.0   0.3    2.2  2  Amino_oxidase    Flavin containing amine oxidoreductase
    1.2e-07   31.8   0.3    3.2e-07   30.5   0.3    1.7  1  NAD_binding_8    NAD(P)-binding Rossmann-like domain
      0.009   16.0   0.8        1.2    9.1   0.1    2.5  2  NAD_binding_9    FAD-NAD(P)-binding
  ------ inclusion threshold ------
        0.3   10.3   1.1        1.3    8.2   0.9    1.9  2  Pyr_redox_2      Pyridine nucleotide-disulphide oxidoreductas


Domain annotation for each model (and alignments):
>> Prenylcys_lyase  Prenylcysteine lyase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  125.6   0.0   6.9e-40   2.5e-36       1     356 [.     109     531 ..     109     536 .. 0.79

  Alignments for each domain:
  == domain 1  score: 125.6 bits;  conditional E-value: 6.9e-40
  Prenylcys_lyase   1 feesswsllnllkLlwrYGls.llrlqmwveeildkFlriYelqekgyaFssveellealggkefleltkvtleealeka..gisekfinelvq 91 
                      fee  w+  +l++Ll rYG   l+rl +  +e +++F riY+ q++g aF++v+ell   g   + e  +++++ea++    +     ++elv+
       KOO23611.1 109 FEEGAWKATTLVRLLSRYGGRtLYRLGQQGSESIRNFSRIYAAQDDGRAFATVDELLAVGG---LHEWPRRSCAEAMAVLfsDAAAPAATELVA 199
                      78999*************87659**********************************9888...999999*****9987655888999****** PP

  Prenylcys_lyase  92 avlrvnYgqsvkina....lvgavslA.gaqsglwavegGnkqvcsgllkkskanv...........inatVtsielksgessslYevtykk.. 167
                      + +r nYgq+   ++    ++++  lA g ++ ++   gG +++  gll++s+ +              at+ + + +   s++  +v +++  
       KOO23611.1 200 GLMRNNYGQDWAPSGalccFTAIAPLAaGGSAAAIGLVGGWEELTRGLLQSSSRSRsrrgsageddpAAATIGATRPQLHLSRQVTSVVTQDdg 293
                      ********986544322227777777613344556679************98844446677777776444444444455555555555555566 PP

  Prenylcys_lyase 168 .......esgtesklyDiVviAtPlqkkesnisfenfsppiee..fkeeyqklvatlvagrlnssyFglke.ks..efplstilttenpelei. 248
                             + +++ ++yD Vv+A+P  +  +  + ++ sp++ +   + +yq++++tlv g l++ yFg +e ++  + ++s++l+ +     + 
       KOO23611.1 294 rfvlsfaDGSSAARVYDHVVLAAPCPTLPATAEAHDESPNLLRrcAPVPYQHVYVTLVWGLLDPAYFGKSEhAAsfNAKFSDVLVADAAGRSVp 387
                      67766646689999************9888888888888887667778********************99843312457899****99999889 PP

  Prenylcys_lyase 249 .........................nslssvssvetskskeekkakeekv..ykifSkeplskeqlkkllssy..esvkekeWla...YPkysp 310
                                               +++s  +s e ++ ++  ++ + ++  +k+fS ++ls + l  l++ +  + + ++ W +   YP  +p
       KOO23611.1 388 flsigrfdeqhappahdsappafpsAAVSAHDSAECARLYAGAHDGAGAIprWKLFSAQELSPADLAPLILCHeeRLTVRHAWTSpgaYPISRP 481
                      9*********************999555555555555555544444444445****************99554225678899987777**9998 PP

  Prenylcys_lyase 311 petleefiLhdr....lY.YlnaiEsaaSamEmsaiagkNvAlLaanrwke 356
                      + +l +f+Lh+     l+ + +aiE a SamE+ a+a++N+AlL ++r ++
       KOO23611.1 482 R-NLSSFVLHESvsggLFlHPSAIEAATSAMEVVAVAARNAALLLVQRLAQ 531
                      7.599*****97333444499*************************99876 PP

>> Amino_oxidase  Flavin containing amine oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.0   0.3   9.6e-08   0.00034       6      68 ..      21      87 ..      16     165 .. 0.86
   2 !   15.1   0.0   2.9e-06      0.01     222     266 ..     275     322 ..     210     343 .. 0.87

  Alignments for each domain:
  == domain 1  score: 20.0 bits;  conditional E-value: 9.6e-08
                   HHHHHHHTT.EEEEEEESSSSSBTTS-EEEETT...EEEESS--EEETTTHHHHHHHHHTTCCCCEE CS
  Amino_oxidase  6 aArqLlsaG.fdVtvlEardrvGGRirtvrsdG...ylielGamwftgagnpllellkelgledsls 68
                   aA  L +a  + + v+Ea++r+GGR    ++++    ++elGa+     +  +le ++ lgl ++l+
     KOO23611.1 21 AAAWLRNASvRHLDVYEASERIGGRTLATQDQDetwATVELGATMGITENRYILEAARSLGLATELR 87
                   77778888889999*************99999767899******99999**************9987 PP

  == domain 2  score: 15.1 bits;  conditional E-value: 2.9e-06
                    TEEEETSEEEEEEEEETTC.EEEEETTSTEE..EESEEEE-S-HHHHH CS
  Amino_oxidase 222 gldirlntrVkeikregdg.vtvtledgevv..eaDaVvvTvplgvlk 266
                    + +++l++ V+++ +++dg   + + dg++    +D+Vv+++p ++l 
     KOO23611.1 275 RPQLHLSRQVTSVVTQDDGrFVLSFADGSSAarVYDHVVLAAPCPTLP 322
                    5689***********77777***********************99997 PP

>> NAD_binding_8  NAD(P)-binding Rossmann-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.5   0.3   8.8e-11   3.2e-07       1      50 [.      11      64 ..      11      79 .. 0.87

  Alignments for each domain:
  == domain 1  score: 30.5 bits;  conditional E-value: 8.8e-11
                   EE--SHHHHHHHHHHHCCTE.EEEEE-SSSSSSGGG-EECETT...CEECTS-- CS
  NAD_binding_8  1 IvGaGlsGlvaAylLakagf.dvlllekrdrlGGraasyevpg...vrvdygah 50
                   I+G+G++G+ aA+ L++a + + +++e+++r+GGr    ++++    +v++ga+
     KOO23611.1 11 IIGGGIGGAFAAAWLRNASVrHLDVYEASERIGGRTLATQDQDetwATVELGAT 64
                   9****************96648*************9988886557888888886 PP

>> NAD_binding_9  FAD-NAD(P)-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.1   0.1   0.00033       1.2       1      53 [.      10      58 ..      10      71 .. 0.78
   2 !    4.9   0.0    0.0067        24     119     152 ..     279     315 ..     266     317 .. 0.77

  Alignments for each domain:
  == domain 1  score: 9.1 bits;  conditional E-value: 0.00033
  NAD_binding_9  1 aivGaGprGlavlerLlarakkkspleitlfdpsep.gagrvwrtdqseelllN 53
                   ai+G+G+ G+ +++ L +     s  ++++++ se  g gr   t++++e +  
     KOO23611.1 10 AIIGGGIGGAFAAAWLRNA----SVRHLDVYEASERiG-GRTLATQDQDETWAT 58
                   8********9888766544....7999******76647.887777777777765 PP

  == domain 2  score: 4.9 bits;  conditional E-value: 0.0067
  NAD_binding_9 119 vhraevvdleeradgqavll.adgasl..aadaVvLA 152
                    +++ +v+++ +++dg+ vl  adg+s    +d+VvLA
     KOO23611.1 279 HLSRQVTSVVTQDDGRFVLSfADGSSAarVYDHVVLA 315
                    45789**********9766658887643489*****9 PP

>> Pyr_redox_2  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.2   0.9   0.00035       1.3       2      25 ..       8      31 ..       7      51 .. 0.80
   2 ?   -2.0   0.0      0.47   1.7e+03      70     107 ..     279     316 ..     252     333 .. 0.74

  Alignments for each domain:
  == domain 1  score: 8.2 bits;  conditional E-value: 0.00035
                 SEEEE--SHHHHHHHHHHHHHTS- CS
                 xxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2  2 dvvviGgGpAGlaaaltlaqagak 25
                 ++++iGgG++G  aa  l++a+++
   KOO23611.1  8 NIAIIGGGIGGAFAAAWLRNASVR 31
                 799***************996544 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 0.47
                  CHCCTCEEEEESC.EEEEETEEECTCEEEEEESEEEE-- CS
                  xxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2  70 llgeevvkidpgk.kkvklekkkegdeekiaydklvlAt 107
                   l ++v+++ ++  ++++l+  + g+     yd++vlA 
   KOO23611.1 279 HLSRQVTSVVTQDdGRFVLSFAD-GSSAARVYDHVVLAA 316
                  45556677664444777775544.677777899999996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (592 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       403  (0.0224776); expected 358.6 (0.02)
Passed bias filter:                      303  (0.0169); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.54u 0.28s 00:00:00.82 Elapsed: 00:00:00.42
# Mc/sec: 4239.99
//
Query:       KOO23612.1  [L=265]
Description: hypothetical protein Ctob_001574 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    0.00039   20.1   0.1    0.00078   19.1   0.1    1.6  1  SHOCT         Short C-terminal domain
  ------ inclusion threshold ------
       0.02   15.7   0.0       0.04   14.7   0.0    1.4  1  DMAP_binding  DMAP1-binding Domain
       0.23   11.0   1.0       0.63    9.6   1.0    1.7  1  Lsm_interact  Lsm interaction motif


Domain annotation for each model (and alignments):
>> SHOCT  Short C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.1   0.1   1.3e-07   0.00078       5      27 ..     239     261 ..     235     262 .. 0.90

  Alignments for each domain:
  == domain 1  score: 19.1 bits;  conditional E-value: 1.3e-07
       SHOCT   5 kLkeLyarGeIteEEFeakKakL 27 
                 +L eL+++G+ t+ E+eak+a +
  KOO23612.1 239 QLTELLEAGLVTQSEYEAKRAAI 261
                 789*****************987 PP

>> DMAP_binding  DMAP1-binding Domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.7   0.0   6.7e-06      0.04       8      39 ..     232     263 ..     230     264 .. 0.94

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 6.7e-06
  DMAP_binding   8 dvrerLaeLeldlseGdiTeKgyekkklkLLr 39 
                    v+er+ +L++ l+ G  T+ +ye k++++++
    KOO23612.1 232 SVKERMVQLTELLEAGLVTQSEYEAKRAAIID 263
                   69***************************987 PP

>> Lsm_interact  Lsm interaction motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   1.0   0.00011      0.63       8      15 ..     156     163 ..     156     163 .. 0.94

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 0.00011
  Lsm_interact   8 mSNDDFRK 15 
                   mSN+DFR+
    KOO23612.1 156 MSNEDFRR 163
                   9******6 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (265 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       564  (0.0314574); expected 358.6 (0.02)
Passed bias filter:                      412  (0.0229795); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.42u 0.26s 00:00:00.68 Elapsed: 00:00:00.40
# Mc/sec: 2000.81
//
Query:       KOO23613.1  [L=323]
Description: hypothetical protein Ctob_001577, partial [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    0.00046   20.4   1.7    0.00046   20.4   1.7    3.9  4  TPR_12    Tetratricopeptide repeat
  ------ inclusion threshold ------
      0.023   14.9   3.8       0.72   10.2   0.1    4.3  5  TPR_8     Tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> TPR_12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.7   0.1     0.075   6.7e+02      62      75 ..      55      68 ..      54      70 .. 0.78
   2 !   20.4   1.7   5.1e-08   0.00046       3      76 ..      76     151 ..      74     152 .. 0.91
   3 !    7.8   0.3   0.00044       3.9       2      45 ..     119     162 ..     118     167 .. 0.78
   4 ?   -3.8   4.2       1.8   1.6e+04      18      36 ..     248     266 ..     232     306 .. 0.55

  Alignments for each domain:
  == domain 1  score: 0.7 bits;  conditional E-value: 0.075
      TPR_12 62 eeAlelleealaia 75
                + Al++l++ala a
  KOO23613.1 55 DVALAFLRRALASA 68
                56999999999876 PP

  == domain 2  score: 20.4 bits;  conditional E-value: 5.1e-08
      TPR_12   3 atalnnlaavlrrlgrydeAlellekaleiarrllGpdh..pltattlrnLgrlyralgryeeAlelleealaiae 76 
                 a ++ n+ ++l+ lgr+ eAl++ e a e+ r+  G+     ++a+ l+n + +++ lg+  +Ale  e  l++a+
  KOO23613.1  76 AEVMGNVCVALNSLGRHSEALQMAENACEVLRAGGGGRTaqTQLAAMLHNKSCCHEFLGNRTAALETAEAGLKLAT 151
                 677889999**********************9998888867789*************************9999886 PP

  == domain 3  score: 7.8 bits;  conditional E-value: 0.00044
      TPR_12   2 vatalnnlaavlrrlgrydeAlellekaleiarrllGpdhplta 45 
                 +a++l+n   ++  lg+ + Ale  e+ l +a++l  pd ++++
  KOO23613.1 119 LAAMLHNKSCCHEFLGNRTAALETAEAGLKLATKLGLPDDDALL 162
                 67888888888888999999999999999999888878776665 PP

  == domain 4  score: -3.8 bits;  conditional E-value: 1.8
      TPR_12  18 rydeAlellekaleiarrl 36 
                 + ++A++   ++ +++r++
  KOO23613.1 248 EAEKARRQVAEVEAAMRKA 266
                 3444444444444444444 PP

>> TPR_8  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.0      0.33     3e+03      20      33 ..      57      70 ..      55      70 .. 0.85
   2 ?    1.8   0.0     0.039   3.5e+02      10      29 ..      85     104 ..      78     105 .. 0.88
   3 ?   10.2   0.1   8.1e-05      0.72       2      31 ..     121     150 ..     120     152 .. 0.92
   4 ?   -1.7   0.0      0.51   4.6e+03      14      28 ..     162     176 ..     161     177 .. 0.86
   5 ?   -3.2   0.3       1.6   1.5e+04      13      27 ..     287     301 ..     284     305 .. 0.67

  Alignments for each domain:
  == domain 1  score: -1.1 bits;  conditional E-value: 0.33
                HHHHHHHHHHHHHH CS
       TPR_8 20 Akeyyekaleldpd 33
                A +++++al  +p+
  KOO23613.1 57 ALAFLRRALASAPK 70
                8899*****99886 PP

  == domain 2  score: 1.8 bits;  conditional E-value: 0.039
                 HHHHTT-HHHHHHHHHHHHH CS
       TPR_8  10 iylklgdyeeAkeyyekale 29 
                 ++ +lg++ eA +  e a+e
  KOO23613.1  85 ALNSLGRHSEALQMAENACE 104
                 5679*******999998876 PP

  == domain 3  score: 10.2 bits;  conditional E-value: 8.1e-05
                 CHHHHHHHHHHHTT-HHHHHHHHHHHHHHH CS
       TPR_8   2 eayynlgsiylklgdyeeAkeyyekaleld 31 
                  +++n++++++ lg+  +A e+ e  l+l+
  KOO23613.1 121 AMLHNKSCCHEFLGNRTAALETAEAGLKLA 150
                 5899**********************9997 PP

  == domain 4  score: -1.7 bits;  conditional E-value: 0.51
                 TT-HHHHHHHHHHHH CS
       TPR_8  14 lgdyeeAkeyyekal 28 
                 l+++ ++k+ + kal
  KOO23613.1 162 LQRLTQSKADLVKAL 176
                 6789999****9998 PP

  == domain 5  score: -3.2 bits;  conditional E-value: 1.6
                 HTT-HHHHHHHHHHH CS
       TPR_8  13 klgdyeeAkeyyeka 27 
                 kl+   +A++  e a
  KOO23613.1 287 KLNAAANAEKDAELA 301
                 566667787777766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (323 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2161  (0.120531); expected 358.6 (0.02)
Passed bias filter:                      705  (0.0393218); expected 358.6 (0.02)
Passed Vit filter:                        78  (0.00435049); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.55u 0.28s 00:00:00.83 Elapsed: 00:00:00.44
# Mc/sec: 2225.31
//
Query:       KOO23614.1  [L=445]
Description: cysteine mitochondrial isoform 1 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    6.5e-92  308.3   0.0    7.6e-92  308.1   0.0    1.0  1  Aminotran_5      Aminotransferase class-V
    2.9e-06   26.8   0.0    4.2e-06   26.2   0.0    1.3  1  Beta_elim_lyase  Beta-eliminating lyase
    0.00051   19.5   0.1    0.00081   18.8   0.1    1.3  1  DegT_DnrJ_EryC1  DegT/DnrJ/EryC1/StrS aminotransferase family
  ------ inclusion threshold ------
      0.056   12.0   0.0      0.086   11.3   0.0    1.2  1  Cys_Met_Meta_PP  Cys/Met metabolism PLP-dependent enzyme
      0.073   11.8   0.0       0.11   11.2   0.0    1.3  1  Pyridoxal_deC    Pyridoxal-dependent decarboxylase conserved 
       0.17   11.9   0.0       0.62   10.1   0.0    1.9  2  Mrr_cat          Restriction endonuclease


Domain annotation for each model (and alignments):
>> Aminotran_5  Aminotransferase class-V
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  308.1   0.0   2.5e-95   7.6e-92       1     370 [.      47     409 ..      47     410 .. 0.97

  Alignments for each domain:
  == domain 1  score: 308.1 bits;  conditional E-value: 2.5e-95
                  EEEBTTTS----HHHHHHHHHHHHCTCCSSSSSSSHHHHHHHHHHHHHHHHHHHHHT-STGGGEEEESSHHHHHHHHHHHCCCC.-TTTSEEEEETTS CS
  Aminotran_5   1 iyldsaAttqkpqeVldalqeyytdynanvhrsvhhlgkeatkaveearekvaelinaeseeeiiftsGtteainlvalslars.lkpgdeivvteae 97 
                  iylds+Att++ +++lda+  y+t  ++n+h+ +h +g+e  +ave+are+va li a+  +eiiftsG+te++n++++++a+   +++++ ++t++e
   KOO23614.1  47 IYLDSQATTPLDPRALDAMLPYLTGVYGNPHSRTHAYGWESGDAVETAREQVASLISADP-KEIIFTSGATESNNMAIKGVAHFyKEKKNHLITTVTE 143
                  8**********************************************************7.*********************999999********** PP

                  HGGGTHHHHHHHHHHTEEEEEEEBETTSCBEGGGHHHH--TTEEEEEEESBETTTTEB--HHHHHHHHHHTT-EEEEE-TTTTTTS---HHHHTESEE CS
  Aminotran_5  98 hhanlvpwqelakrtgakvkvipldeegeldldelekllnektklvaithvsnvtGtiqpveeigklakkkgalvlvDaaqavghipidvkklgvDfl 195
                  h++ l  ++ l+ r+g++v+++p+ ++g++dl++le++++++t lv+++hv+n++G++qp++eigkl++ +++++++Daaq+vg+ip+dv++l vD++
   KOO23614.1 144 HKCVLDSCRSLQ-REGFEVTYLPVGKDGLVDLKALEAAIRPETVLVSVMHVNNEIGVVQPIAEIGKLCRSRKVFLHIDAAQSVGKIPVDVDALHVDLM 240
                  ***********7.99*********************************************************************************** PP

                  EEETTTTTSSTT-EEEEEEHHHHHTS..SS.STTSEEEEETTEEEEHCTTGGGS.SS--HHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCT CS
  Aminotran_5 196 afsghKllgPtGiGvlyvrkellekleplllggemveevsleettfaeapskfeaGTpnvagiiglgaaleyleeigleaiekhekelaeyllerlks 293
                  ++s+hKl+gP+GiG+lyvr++  ++lep+  gg+       +e++       +++GT + + i g+gaa e+    ++++  +h ++l+ +l++++ +
   KOO23614.1 241 SISAHKLYGPKGIGALYVRRRPRVRLEPVFSGGG-------QERG-------MRSGTLPPPLIAGFGAACEIS-GREMARDLAHVQRLSRKLHKGIVE 323
                  **********************************.......9999.......899****************98.889999*************99855 PP

                  .STTEEEES.-B-CTCBSEEEEEETTCSHHHHHHHHHHTTEEEEEE-TTT....HHHHHHTT.S.......-EEEEE--TTS-HHHHHH CS
  Aminotran_5 294 .lpgvrlygpdkaerrasivsfnfkgvhaedvatlLdeegIavrsGhhca....qplmkrlale.......gtvRaSlyiynteeevdr 370
                   +p+v ++g + + r ++ ++++f++v+ e + ++L++  +av+sG++c+    +p+++++al         ++R+++++ +t +evd+
   KOO23614.1 324 aIPHVVVNG-SMDSRYPGNLNVSFAYVEGESLIMALKD--VAVSSGSACTsaslEPSYVLRALGveedmahTSIRFGIGRFTTDAEVDY 409
                  4******99.699*******************999988..**********9999899888888888****99***************95 PP

>> Beta_elim_lyase  Beta-eliminating lyase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.2   0.0   1.4e-09   4.2e-06      36     213 ..      93     262 ..      80     427 .. 0.66

  Alignments for each domain:
  == domain 1  score: 26.2 bits;  conditional E-value: 1.4e-09
                      HHHHHHHHHTT-S..EEEEES-HHHHHHHHH..HHH-..-TTEEEEEETT-HHHHSSTTHHHHCC--EEEEE-EBTTTBE-HHHHHHHS--S-T CS
  Beta_elim_lyase  36 rLedavaelfgke..aalfvpqGtaAnsill..kill..qrgeevivtepahihfdetgaiaelagvklrdlknkeaGkmdlekleaaikevga 123
                      +  ++va l+ ++   ++f+   t +n++++   ++   ++++  i t + h +        + +g +++ l+  ++G +dl++leaai++   
       KOO23614.1  93 TAREQVASLISADpkEIIFTSGATESNNMAIkgVAHFykEKKNHLITTVTEHKCVLDSCRSLQREGFEVTYLPVGKDGLVDLKALEAAIRP--- 183
                      555666666554432788999999*******66344444555666777777766655544458999*******9999**************... PP

                      TS-EEEEEEEESSBTTTTTB---HHHHHHHHHHHHHCT-EEEEEETTHHHHHHHHTS-CHHHH.TTSSEEEEESSSTT-.-SS-EEEEE-HH CS
  Beta_elim_lyase 124 heekiklisltvTnntagGqvvsleelrevaaiakkygiplhlDgARfanaakslgeivkemf.syvDsvtmslkKdll.anvGgvlafrdd 213
                         ++ l+s+   nn     +  ++ ++e+ ++++++++ lh+D+A      +s+g i+ ++   +vD +++s+ K  +   +G++ + r+ 
       KOO23614.1 184 ---ETVLVSVMHVNNE----IGVVQPIAEIGKLCRSRKVFLHIDAA------QSVGKIPVDVDaLHVDLMSISAHKLYGpKGIGALYVRRRP 262
                      ...4778888888885....44556688899*************98......4555555555424688888888885431345555444444 PP

>> DegT_DnrJ_EryC1  DegT/DnrJ/EryC1/StrS aminotransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.8   0.1   2.7e-07   0.00081      76     150 ..     150     226 ..      84     231 .. 0.72

  Alignments for each domain:
  == domain 1  score: 18.8 bits;  conditional E-value: 2.7e-07
                      HHHHHHHTT-EEEEE-B-TTTSSB-GGGCGGG--TTEEEEEEB-G...GGB---HHHHHHHHHHCT-EEEEE-TT-TT CS
  DegT_DnrJ_EryC1  76 tanavlelgakpvfvDvdpdtynidpaaieaaitertkaIlpVhl...yGqvadmdalkaiaakhglkvieDaAhAlG 150
                      +  + ++ g ++ ++ v  ++  +d +a+eaai ++t  + + h+    G v  ++++ +++++ ++ +  DaA+++G
       KOO23614.1 150 SCRSLQREGFEVTYLPVG-KDGLVDLKALEAAIRPETVLVSVMHVnneIGVVQPIAEIGKLCRSRKVFLHIDAAQSVG 226
                      455566667777777776.7899**************6666666522469999***********************99 PP

>> Cys_Met_Meta_PP  Cys/Met metabolism PLP-dependent enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   2.9e-05     0.086      58     179 ..      95     226 ..      73     250 .. 0.69

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 2.9e-05
                      HHHHHHHHT-.SEEEEESSHHHHHHHH....HHTTS-T.TEEEEEESTSSHHHHHHHHHTHHHTTCEEEEEST.....TSHHHHHHHCCTTEEE CS
  Cys_Met_Meta_PP  58 eeriaaLegg.eaalavssGmaAiaaa....ilallka.GdeivvsddlYggtqrllkkvlkklgievkfvdt.....sdleelekaikentkl 140
                       e++a L ++  + ++++sG + ++++    + ++ k+  ++++++ + +++  + +++ l++ g ev++  +      dl++le+ai+++t l
       KOO23614.1  95 REQVASLISAdPKEIIFTSGATESNNMaikgVAHFYKEkKNHLITTVTEHKCVLDSCRS-LQREGFEVTYLPVgkdglVDLKALEAAIRPETVL 187
                      56677776664566777777765443311114455554366778777777777777765.4555566666554334447999************ PP

                      EEEESS-TTTT----HHHHHHHHHHTT-EEEEEGTTTHT CS
  Cys_Met_Meta_PP 141 vylEtptnpllkvvDiekiaklakkagvlvvvDntfasp 179
                      v +  + n    v  i++i kl+++++v + +D++ + +
       KOO23614.1 188 VSVMHVNNEIGVVQPIAEIGKLCRSRKVFLHIDAAQSVG 226
                      *********************************987776 PP

>> Pyridoxal_deC  Pyridoxal-dependent decarboxylase conserved domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   3.8e-05      0.11     166     237 ..     158     223 ..     118     267 .. 0.76

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 3.8e-05
                    T-EEEEE--BTTTBB-HHHHHHHHHHHHCTT.EEEEEEEEBS-TTT-BB--HHHHHHHHHHCT-EEEEE-TT CS
  Pyridoxal_deC 166 gvklrvipldengklrgaalekaieedkekGlipffvvatlGttvlgaFddlkelgdicekydlwlHvDAAy 237
                    g+++ ++p+ ++g +  +ale+ai  +     +   v+  +G+        + e+g++c+  ++ lH+DAA 
     KOO23614.1 158 GFEVTYLPVGKDGLVDLKALEAAIRPETVLVSVM-HVNNEIGVV-----QPIAEIGKLCRSRKVFLHIDAAQ 223
                    5668888888888888888888887766653333.666666665.....6899******************6 PP

>> Mrr_cat  Restriction endonuclease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.0       3.1   9.3e+03      70      86 ..     124     140 ..     122     142 .. 0.83
   2 ?   10.1   0.0   0.00021      0.62      16      65 ..     153     201 ..     148     217 .. 0.88

  Alignments for each domain:
  == domain 1  score: -3.3 bits;  conditional E-value: 3.1
                 HHHCTTS..SEEEEEES CS
     Mrr_cat  70 igalkkrgadkgifvtt 86 
                  g+++ ++ +k  ++tt
  KOO23614.1 124 KGVAHFYKEKKNHLITT 140
                 68899999999999998 PP

  == domain 2  score: 10.1 bits;  conditional E-value: 0.00021
                 HHHHHSSSEEE---B-TTSSB--EEEETTEEEEEEEEEEE--TS-B-HHH CS
     Mrr_cat  16 llealGykeveltgrsgDggiDliakkdplgserilvqaKryknkvgvke 65 
                  l+++G++ v+  + ++Dg +Dl a +++   e++lv + + +n++gv +
  KOO23614.1 153 SLQREGFE-VTYLPVGKDGLVDLKALEAAIRPETVLVSVMHVNNEIGVVQ 201
                 5899***9.********************************999999865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (445 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       348  (0.0194099); expected 358.6 (0.02)
Passed bias filter:                      333  (0.0185733); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.51u 0.29s 00:00:00.80 Elapsed: 00:00:00.44
# Mc/sec: 3070.29
//
Query:       KOO23615.1  [L=280]
Description: protein breast cancer susceptibility 1-like protein, partial [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
      8e-09   35.3   0.0    3.6e-08   33.2   0.0    2.0  2  PTCB-BRCT      twin BRCT domain
      1e-08   35.4   0.0    1.6e-06   28.4   0.0    2.9  3  BRCT           BRCA1 C Terminus (BRCT) domain
      7e-05   23.2   0.0      0.011   16.1   0.0    2.4  2  BRCT_2         BRCT domain, a BRCA1 C-terminus domain
  ------ inclusion threshold ------
      0.018   14.9   0.0        5.7    6.9   0.0    2.5  3  RTT107_BRCT_5  Regulator of Ty1 transposition protein 107 BRC


Domain annotation for each model (and alignments):
>> PTCB-BRCT  twin BRCT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.2   0.0     8e-12   3.6e-08       2      45 ..      10      54 ..      10      64 .. 0.84
   2 ?   -1.9   0.0      0.73   3.3e+03      13      26 ..     163     176 ..     158     184 .. 0.77

  Alignments for each domain:
  == domain 1  score: 33.2 bits;  conditional E-value: 8e-12
                EEEEECB-TTCHHHHHHHHHHTT-EEESSEETT-SEEEE.CSS-C CS
   PTCB-BRCT  2 vicvtgysgddrkslqklieamGaeyskdltksvTHLic.ksgeG 45
                +ic++g++ ++  ++++l+ ++G+++ k+++  vTHL++ ++  G
  KOO23615.1 10 CICTSGLDAEQERHVERLVRQLGGSVAKQWKPAVTHLVAaEKQAG 54
                69*************************************533333 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 0.73
                 HHHHHHHHHHTT-E CS
   PTCB-BRCT  13 rkslqklieamGae 26 
                  k+l +l+  mGa+
  KOO23615.1 163 EKDLHELLGLMGAK 176
                 5788999999**98 PP

>> BRCT  BRCA1 C Terminus (BRCT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.4   0.0   3.5e-10   1.6e-06      13      76 ..      11      99 ..       9     101 .. 0.95
   2 ?    0.9   0.0      0.13   5.9e+02       3      35 ..     144     176 ..     142     185 .. 0.91
   3 ?    2.0   0.0     0.063   2.8e+02      63      79 .]     235     251 ..     221     251 .. 0.89

  Alignments for each domain:
  == domain 1  score: 28.4 bits;  conditional E-value: 3.5e-10
                E.EESTSSHHHHHHHHHHHHTTCEEESSCSTTSSEEEESSS........................HSHHHHHHHHHHTTSEEEETHHHH CS
        BRCT 13 i.tgvldnftrdeleelikehGGkvttevskktthlvvgep........................esrslkylealklnipivheewll 76
                i t++ld ++    e+l++ +GG+v +++++ +thlv+ e                          +r++kyl a   + ++v++ w+l
  KOO23615.1 11 IcTSGLDAEQERHVERLVRQLGGSVAKQWKPAVTHLVAAEKqagsnaaraalsarggapdgrtrcAARTQKYLRAVLTGQWVVRFGWVL 99
                558999*******************************999999999*******************9*********************98 PP

  == domain 2  score: 0.9 bits;  conditional E-value: 0.13
                 TTTTTTEEEEEEESTSSHHHHHHHHHHHHTTCE CS
        BRCT   3 ellfhgckfvitgvldnftrdeleelikehGGk 35 
                 + l+ +++ v++g+  + + ++l el+ ++G+k
  KOO23615.1 144 PALLANHQYVLHGPIRELKEKDLHELLGLMGAK 176
                 678999********************9999997 PP

  == domain 3  score: 2.0 bits;  conditional E-value: 0.063
                 HHTTSEEEETHHHHHHH CS
        BRCT  63 lklnipivheewlldci 79 
                 lk++i+ ++++w++d i
  KOO23615.1 235 LKHQIRPLKPQWVFDTI 251
                 6889999*******976 PP

>> BRCT_2  BRCT domain, a BRCA1 C-terminus domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.0   2.5e-06     0.011      19      81 ..      19     110 ..      12     114 .. 0.86
   2 !    4.7   0.0     0.009        40      47      76 ..     218     254 ..     203     263 .. 0.71

  Alignments for each domain:
  == domain 1  score: 16.1 bits;  conditional E-value: 2.5e-06
      BRCT_2  19 psreklkklIeknGGevvetitsavyiviaesneee.............................laekrkrrvvspkyIkdCikkgkllpl 81 
                 ++ +++++l+++ GG v ++ ++av++++a++++                                a+ ++++vv++ ++    ++g  ++ 
  KOO23615.1  19 EQERHVERLVRQLGGSVAKQWKPAVTHLVAAEKQAGsnaaraalsarggapdgrtrcaartqkylRAVLTGQWVVRFGWVLSTQRAGFYVDE 110
                 678899**************************998899999999999999999999999999998889999999999999877776666665 PP

  == domain 2  score: 4.7 bits;  conditional E-value: 0.009
      BRCT_2  47 iaesneee.......laekrkrrvvspkyIkdCikkg 76 
                 ++es+ +e          k++ r ++p++++d i+ +
  KOO23615.1 218 FCESHPDEheaefrqRCLKHQIRPLKPQWVFDTISYQ 254
                 333333334567777778899999********99876 PP

>> RTT107_BRCT_5  Regulator of Ty1 transposition protein 107 BRCT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.9   0.0    0.0013       5.7      20      60 ..      10      50 ..       2      53 .. 0.79
   2 ?    5.1   0.0    0.0045        20      62      85 ..      77     100 ..      74     114 .. 0.83
   3 ?   -3.4   0.0         2   9.1e+03      78      95 ..     242     260 ..     234     263 .. 0.66

  Alignments for each domain:
  == domain 1  score: 6.9 bits;  conditional E-value: 0.0013
                   EEESSS.TT..SSHHHHHHHHHTTEEE-SGCCT.-SEEE-SS CS
  RTT107_BRCT_5 20 avlTgceeevnkedsdkkkLrklGikivqeakk.cntliApk 60
                   +++T   +  ++e++  +  r+lG ++ ++ k+ +++l+A +
     KOO23615.1 10 CICTSGLDA-EQERHVERLVRQLGGSVAKQWKPaVTHLVAAE 50
                   566655544.4899999999*********99999*****976 PP

  == domain 2  score: 5.1 bits;  conditional E-value: 0.0045
                    --SHHHHHHCCCTTEEE-CHHHHH CS
  RTT107_BRCT_5  62 lRTeKFLksLskapkilspdfied 85 
                     RT+K+L++  +++ ++   ++ +
     KOO23615.1  77 ARTQKYLRAVLTGQWVVRFGWVLS 100
                    7***************99999865 PP

  == domain 3  score: -3.4 bits;  conditional E-value: 2
                    E-CHHHHHHHH.HTS---S CS
  RTT107_BRCT_5  78 lspdfiedvLk.kkklldl 95 
                    l+p+++ d ++ +   +d+
     KOO23615.1 242 LKPQWVFDTISyQAPRPDV 260
                    7899999988853344555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (280 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       380  (0.0211947); expected 358.6 (0.02)
Passed bias filter:                      315  (0.0175693); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.44u 0.21s 00:00:00.65 Elapsed: 00:00:00.38
# Mc/sec: 2182.33
//
Query:       KOO23616.1  [L=586]
Description: ankyrin repeat protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.1e-18   66.7   0.1      4e-11   43.3   0.0    2.6  2  Ank_2     Ankyrin repeats (3 copies)
      8e-16   57.9   1.0    1.3e-05   25.4   0.0    3.5  3  Ank_5     Ankyrin repeats (many copies)
      4e-14   51.3   0.3    0.00027   21.2   0.3    4.6  4  Ank_3     Ankyrin repeat
    3.1e-13   49.5   0.4    4.2e-05   23.8   1.0    4.2  4  Ank       Ankyrin repeat
    1.2e-12   48.1   2.0    8.1e-06   26.3   1.4    3.9  4  Ank_4     Ankyrin repeats (many copies)
  ------ inclusion threshold ------
          1    8.2   6.2        2.2    7.1   6.2    1.5  1  DUF4554   Domain of unknown function (DUF4554)


Domain annotation for each model (and alignments):
>> Ank_2  Ankyrin repeats (3 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.3   0.0   1.3e-14     4e-11      11      83 .]     110     190 ..      87     190 .. 0.82
   2 !   21.1   0.1   1.2e-07   0.00036      25      73 ..     193     247 ..     189     255 .. 0.80

  Alignments for each domain:
  == domain 1  score: 43.3 bits;  conditional E-value: 1.3e-14
       Ank_2  11 elvklLlegadpnkngktaLhyAakngnleivklLleh..........adndgrtpLhyAarsghleivklLlekgadinlkd 83 
                 ++++ L++ +d+  +g t+L +A k+g  +iv+ Ll++           d dg  pLh+Aar  h eiv +Ll+ gad+++k+
  KOO23616.1 110 SVIEELIQMKDA--QGTTPLLWASKRGFGDIVEVLLAFssdlesvvgaRDADGCCPLHHAARRHHNEIVAMLLDAGADVHAKN 190
                 456666645554..69***********99*******9666767777755599***********99********99****9986 PP

  == domain 2  score: 21.1 bits;  conditional E-value: 1.2e-07
       Ank_2  25 ngktaLhyAakngnleivklLleh......adndgrtpLhyAarsghleivklLl 73 
                 ++ taLh+Aa+++n  ++++Lle+      +++ g tpL +A + +   +v+lL 
  KOO23616.1 193 DKSTALHWAARKDNGVAIQMLLEAgadreaQNSWGATPLDNALFAKCWHAVQLLA 247
                 457********998789*****977565655688*********998888999887 PP

>> Ank_5  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.2   0.0   2.9e-05     0.087      12      50 ..     119     161 ..     113     164 .. 0.83
   2 !   16.8   0.8   2.1e-06    0.0061      19      47 ..     163     191 ..     156     192 .. 0.93
   3 !   25.4   0.0   4.2e-09   1.3e-05      14      54 ..     194     232 ..     190     234 .. 0.91

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 2.9e-05
       Ank_5  12 ldgggntpLhvAakygaadvvrlLl....argadlnltdsrGl 50 
                 +d  g+tpL +A+k+g  d+v++Ll    + ++  +++d++G 
  KOO23616.1 119 KDAQGTTPLLWASKRGFGDIVEVLLafssDLESVVGARDADGC 161
                 566799*******************888888888888888775 PP

  == domain 2  score: 16.8 bits;  conditional E-value: 2.1e-06
       Ank_5  19 pLhvAakygaadvvrlLlargadlnltds 47 
                 pLh+Aa++++ ++v +Ll+ gad  +++s
  KOO23616.1 163 PLHHAARRHHNEIVAMLLDAGADVHAKNS 191
                 9***********************99986 PP

  == domain 3  score: 25.4 bits;  conditional E-value: 4.2e-09
       Ank_5  14 gggntpLhvAakygaadvvrlLlargadlnltdsrGltald 54 
                 +   t+Lh+Aa++ +   +++Ll+ gad+ +++s+G t+ld
  KOO23616.1 194 K--STALHWAARKDNGVAIQMLLEAGADREAQNSWGATPLD 232
                 3..3************************************9 PP

>> Ank_3  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.8   0.0     0.002       5.9       4      29 ..     125     149 ..     122     151 .. 0.89
   2 !   21.2   0.3   8.9e-08   0.00027       1      31 []     159     188 ..     159     188 .. 0.95
   3 !   16.3   0.0   3.5e-06      0.01       3      28 ..     195     219 ..     193     222 .. 0.91
   4 ?   -0.7   0.0       1.2   3.6e+03       2      21 ..     227     246 ..     226     250 .. 0.82

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 0.002
       Ank_3   4 tpLhlAarsgnleivkfLlenkgadv 29 
                 tpL +A + g  +iv+ Ll  +  d+
  KOO23616.1 125 TPLLWASKRGFGDIVEVLLA-FSSDL 149
                 9******************9.77765 PP

  == domain 2  score: 21.2 bits;  conditional E-value: 8.9e-08
       Ank_3   1 nGetpLhlAarsgnleivkfLlenkgadvna 31 
                 +G++pLh+Aar  + eiv +Ll+  gadv+a
  KOO23616.1 159 DGCCPLHHAARRHHNEIVAMLLD-AGADVHA 188
                 699********************.9***985 PP

  == domain 3  score: 16.3 bits;  conditional E-value: 3.5e-06
       Ank_3   3 etpLhlAarsgnleivkfLlenkgad 28 
                  t+Lh+Aar +n   +++Lle  gad
  KOO23616.1 195 STALHWAARKDNGVAIQMLLE-AGAD 219
                 69***********99******.8999 PP

  == domain 4  score: -0.7 bits;  conditional E-value: 1.2
       Ank_3   2 GetpLhlAarsgnleivkfL 21 
                 G tpL  A+ + +   v++L
  KOO23616.1 227 GATPLDNALFAKCWHAVQLL 246
                 89******999888767766 PP

>> Ank  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.0       1.7   5.1e+03       8      22 ..      89     116 ..      88     121 .. 0.77
   2 !    5.9   0.0    0.0064        19       2      27 ..     123     149 ..     122     156 .. 0.79
   3 !   23.8   1.0   1.4e-08   4.2e-05       1      31 [.     159     190 ..     159     191 .. 0.93
   4 !   13.9   0.0   1.9e-05     0.058       4      31 ..     196     224 ..     193     225 .. 0.85

  Alignments for each domain:
  == domain 1  score: -1.8 bits;  conditional E-value: 1.7
                 HHHHHTT.............HHHHHHHH CS
         Ank   8 lAatngk.............kriiklLL 22 
                 lA+++g+             +++i++L+
  KOO23616.1  89 LAVQRGHrvgalqemfeeitPSVIEELI 116
                 6777788888888888888888999998 PP

  == domain 2  score: 5.9 bits;  conditional E-value: 0.0064
                 SBBHHHHHHHHTTHHHHHHHH.TTTST CS
         Ank   2 GnTPLHlAatngkkriiklLL.hGAnl 27 
                 G TPL +A+ +g  +i++ LL  +++l
  KOO23616.1 123 GTTPLLWASKRGFGDIVEVLLaFSSDL 149
                 89*******555556*****9655676 PP

  == domain 3  score: 23.8 bits;  conditional E-value: 1.4e-08
                 TSBBHHHHHHHHTTHHHHHHHH.TTTSTTCBT CS
         Ank   1 dGnTPLHlAatngkkriiklLL.hGAnlnald 31 
                 dG+ PLH Aa++ + +i+ +LL  GA+++a++
  KOO23616.1 159 DGCCPLHHAARRHHNEIVAMLLdAGADVHAKN 190
                 8999******99999*******77******98 PP

  == domain 4  score: 13.9 bits;  conditional E-value: 1.9e-05
                 BHHHHHHHHTTHHHHHHHH.TTTSTTCBT CS
         Ank   4 TPLHlAatngkkriiklLL.hGAnlnald 31 
                 T+LH+Aa+ ++   i++LL  GA+  a++
  KOO23616.1 196 TALHWAARKDNGVAIQMLLeAGADREAQN 224
                 *******777778889***88***99998 PP

>> Ank_4  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.0       5.8   1.7e+04      39      47 ..      87      95 ..      84     101 .. 0.71
   2 !   13.1   0.0   3.7e-05      0.11      28      55 .]     117     143 ..     109     143 .. 0.90
   3 !   26.3   1.4   2.7e-09   8.1e-06       4      55 .]     163     214 ..     163     214 .. 0.93
   4 !   14.7   0.1   1.1e-05     0.034       3      44 ..     196     236 ..     194     246 .. 0.91

  Alignments for each domain:
  == domain 1  score: -3.5 bits;  conditional E-value: 5.8
       Ank_4 39 lhiAakrgn 47
                ++ A++rg+
  KOO23616.1 87 VWLAVQRGH 95
                788999996 PP

  == domain 2  score: 13.1 bits;  conditional E-value: 3.7e-05
       Ank_4  28 naqdnrsGetalhiAakrgnveilklLl 55 
                  +  +++G t+l  A krg+ +i++ Ll
  KOO23616.1 117 QMK-DAQGTTPLLWASKRGFGDIVEVLL 143
                 466.9********************997 PP

  == domain 3  score: 26.3 bits;  conditional E-value: 2.7e-09
       Ank_4   4 aLhyaaisgrlelvrlLlekgadinaqdnrsGetalhiAakrgnveilklLl 55 
                 +Lh+aa   + e+v+ Ll+ gad++a  + +  talh Aa++ n  ++++Ll
  KOO23616.1 163 PLHHAARRHHNEIVAMLLDAGADVHAKNSVDKSTALHWAARKDNGVAIQMLL 214
                 79************************9668899**********988888886 PP

  == domain 4  score: 14.7 bits;  conditional E-value: 1.1e-05
       Ank_4   3 taLhyaaisgrlelvrlLlekgadinaqdnrsGetalhiAak 44 
                 taLh+aa + +  +++ Lle gad  aq n+ G t+l++A+ 
  KOO23616.1 196 TALHWAARKDNGVAIQMLLEAGADREAQ-NSWGATPLDNALF 236
                 89*************************9.***********96 PP

>> DUF4554  Domain of unknown function (DUF4554)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.1   6.2   0.00072       2.2     354     439 ..     269     354 ..     254     363 .. 0.67

  Alignments for each domain:
  == domain 1  score: 7.1 bits;  conditional E-value: 0.00072
     DUF4554 354 tedahensslellaetsgqaenkrlkrgslrqgveetral..rsaralspseaaarraeptaasltakgaekrkahskakaasraspg 439
                 t +  +++  +l  +t  q en+r k  + +q++e+++a   ++ara ++  aa r    + a l a g++  ++++++ ++ + +pg
  KOO23616.1 269 TAEERHEKLAKLAMNTMVQRENRRQKLEAQHQAREQQQAAidEAARAARRQGAADRA--LARALLPAAGHKLSVTKQRTASPRKQAPG 354
                 34444445578888*********************9987622455666555555444..34555666665555555555555555554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (586 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1477  (0.0823805); expected 358.6 (0.02)
Passed bias filter:                      524  (0.0292264); expected 358.6 (0.02)
Passed Vit filter:                        53  (0.0029561); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.67u 0.28s 00:00:00.95 Elapsed: 00:00:00.44
# Mc/sec: 3973.13
//
Query:       KOO23617.1  [L=442]
Description: calcium-dependent protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.1e-21   72.8   1.1    0.00013   21.6   0.1    6.7  7  EF-hand_6  EF-hand domain
    1.2e-19   68.3   6.3    0.00027   20.3   0.1    5.9  6  EF-hand_1  EF hand
    1.8e-17   63.6   1.4    2.7e-05   24.5   0.0    4.9  4  EF-hand_7  EF-hand domain pair
    2.7e-16   59.1   0.2    0.00015   21.5   0.1    5.5  6  EF-hand_8  EF-hand domain pair
    9.6e-11   40.7   7.7    4.5e-05   22.7   0.1    5.0  5  EF-hand_5  EF hand
     0.0074   16.4   0.0      0.034   14.3   0.0    2.0  2  CheX       Chemotaxis phosphatase CheX


Domain annotation for each model (and alignments):
>> EF-hand_6  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.6   0.1   4.4e-08   0.00013       1      22 [.       9      30 ..       9      34 .. 0.94
   2 !   14.8   0.0   6.5e-06     0.019       2      27 ..      46      71 ..      45      74 .. 0.87
   3 !   14.6   0.0   7.7e-06     0.023       3      28 ..      80     105 ..      78     112 .. 0.90
   4 !    8.5   0.1   0.00072       2.1       3      27 ..     199     223 ..     197     225 .. 0.91
   5 ?   -0.0   0.0      0.38   1.1e+03      14      27 ..     249     262 ..     249     265 .. 0.90
   6 ?   -1.4   0.0       1.1   3.2e+03      18      27 ..     287     296 ..     283     301 .. 0.85
   7 ?    3.7   0.0     0.025        74       6      28 ..     317     338 ..     313     348 .. 0.78

  Alignments for each domain:
  == domain 1  score: 21.6 bits;  conditional E-value: 4.4e-08
   EF-hand_6  1 elreaFklfDkdgdGkidaeEl 22
                e+re+F+ +D+d++Gki+++El
  KOO23617.1  9 EIRELFDSIDTDKSGKISMNEL 30
                79*******************9 PP

  == domain 2  score: 14.8 bits;  conditional E-value: 6.5e-06
   EF-hand_6  2 lreaFklfDkdgdGkidaeElrkalr 27
                ++++F+ +Dk+g G +++ E+  a  
  KOO23617.1 46 IDSVFRRYDKSGRGALTITEFCTAAE 71
                6799*****************98766 PP

  == domain 3  score: 14.6 bits;  conditional E-value: 7.7e-06
   EF-hand_6   3 reaFklfDkdgdGkidaeElrkalrk 28 
                 +++F ++D dg+G+++++E++ +l +
  KOO23617.1  80 HDVFIELDPDGSGQVSYSEMKIMLGQ 105
                 689*******************9975 PP

  == domain 4  score: 8.5 bits;  conditional E-value: 0.00072
   EF-hand_6   3 reaFklfDkdgdGkidaeElrkalr 27 
                 +e+++ +D dg+G i  +E++++l 
  KOO23617.1 199 KELYDDIDGDGSGIIGDSEFVAWLA 223
                 588999***************9995 PP

  == domain 5  score: -0.0 bits;  conditional E-value: 0.38
   EF-hand_6  14 dGkidaeElrkalr 27 
                 +G++da+ lr+al+
  KOO23617.1 249 TGEWDANRLRHALQ 262
                 699*********98 PP

  == domain 6  score: -1.4 bits;  conditional E-value: 1.1
   EF-hand_6  18 daeElrkalr 27 
                 +++E+ ++l+
  KOO23617.1 287 SKQEFLSMLK 296
                 789*****99 PP

  == domain 7  score: 3.7 bits;  conditional E-value: 0.025
   EF-hand_6   6 FklfDkdgdGkidaeElrkalrk 28 
                 F+ +    + ++d  E++++l++
  KOO23617.1 317 FNTI-AGSNKSVDVTEFQSWLQM 338
                 5555.445779**********94 PP

>> EF-hand_1  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.3   0.1   8.9e-08   0.00027       1      23 [.       9      31 ..       9      34 .. 0.93
   2 !   14.8   0.0     5e-06     0.015       2      27 ..      46      71 ..      45      73 .. 0.90
   3 !   17.6   0.0   6.5e-07    0.0019       4      26 ..      81     103 ..      79     105 .. 0.91
   4 !   11.3   0.1   6.8e-05       0.2       3      27 ..     199     223 ..     199     224 .. 0.90
   5 ?    1.8   0.1     0.074   2.2e+02      18      29 .]     287     298 ..     285     298 .. 0.89
   6 ?   -1.4   0.0      0.73   2.2e+03      17      27 ..     327     337 ..     324     338 .. 0.83

  Alignments for each domain:
  == domain 1  score: 20.3 bits;  conditional E-value: 8.9e-08
                HHHHHHHHHTTTSSSEEEHHHHH CS
   EF-hand_1  1 elkeiFrefDkDgdGkIdfeEfk 23
                e++e+F+ +D+D++GkI+ +E+ 
  KOO23617.1  9 EIRELFDSIDTDKSGKISMNELF 31
                79*******************95 PP

  == domain 2  score: 14.8 bits;  conditional E-value: 5e-06
                HHHHHHHHTTTSSSEEEHHHHHHHHH CS
   EF-hand_1  2 lkeiFrefDkDgdGkIdfeEfkellk 27
                ++ +Fr +Dk g G +++ Ef+++ +
  KOO23617.1 46 IDSVFRRYDKSGRGALTITEFCTAAE 71
                7899******************9865 PP

  == domain 3  score: 17.6 bits;  conditional E-value: 6.5e-07
                 HHHHHHTTTSSSEEEHHHHHHHH CS
   EF-hand_1   4 eiFrefDkDgdGkIdfeEfkell 26 
                 ++F e+D Dg+G+++++E+k +l
  KOO23617.1  81 DVFIELDPDGSGQVSYSEMKIML 103
                 7899***************9987 PP

  == domain 4  score: 11.3 bits;  conditional E-value: 6.8e-05
                 HHHHHHHTTTSSSEEEHHHHHHHHH CS
   EF-hand_1   3 keiFrefDkDgdGkIdfeEfkellk 27 
                 ke+ +++D Dg+G I  +Ef+++l+
  KOO23617.1 199 KELYDDIDGDGSGIIGDSEFVAWLA 223
                 578899***************9985 PP

  == domain 5  score: 1.8 bits;  conditional E-value: 0.074
                 EHHHHHHHHHHH CS
   EF-hand_1  18 dfeEfkellkkl 29 
                 +++Ef+++lk+l
  KOO23617.1 287 SKQEFLSMLKRL 298
                 789******986 PP

  == domain 6  score: -1.4 bits;  conditional E-value: 0.73
                 EEHHHHHHHHH CS
   EF-hand_1  17 IdfeEfkellk 27 
                 +d  Ef+++l+
  KOO23617.1 327 VDVTEFQSWLQ 337
                 8999***9986 PP

>> EF-hand_7  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.8   0.2   3.2e-08   9.6e-05      41      66 ..       5      30 ..       2      35 .. 0.90
   2 !   24.5   0.0     9e-09   2.7e-05       6      68 ..      48     101 ..      44     103 .. 0.84
   3 !   18.0   0.0   9.6e-07    0.0029       4      69 ..      79     221 ..      77     223 .. 0.82
   4 ?    2.9   0.0      0.05   1.5e+02      16      70 ..     283     336 ..     281     339 .. 0.53

  Alignments for each domain:
  == domain 1  score: 22.8 bits;  conditional E-value: 3.2e-08
   EF-hand_7 41 lsdeelellfkefDtdkdGvisfdEF 66
                +s+ee+++lf+ +Dtdk+G+is++E+
  KOO23617.1  5 SSKEEIRELFDSIDTDKSGKISMNEL 30
                5899********************97 PP

  == domain 2  score: 24.5 bits;  conditional E-value: 9e-09
   EF-hand_7   6 eaFkelDtdgdgyldkeellrllrkifqgagegsklsdeelellfkefDtdkdGvisfdEFlk 68 
                  +F+ +D+ g+g l+ +e+  + +      + g+     +  ++f e+D d++G++s++E++ 
  KOO23617.1  48 SVFRRYDKSGRGALTITEFCTAAE------ELGFG---AAAHDVFIELDPDGSGQVSYSEMKI 101
                 68****************886666......77777...34558*****************975 PP

  == domain 3  score: 18.0 bits;  conditional E-value: 9.6e-07
   EF-hand_7   4 lkeaFkelDtdgdgyldkeellr.........llrkifqga.......................................................... 35 
                  +++F elD dg+g ++++e++          +       a                                                          
  KOO23617.1  79 AHDVFIELDPDGSGQVSYSEMKImlgqrllspI-------Akrfiramafdaaqravevdttgwtlrpeskesireqvleklkscaparasdlyramsg 170
                 6899****************9987777755552.......03334445677888899999999999998888888888888888889999999999999 PP

   EF-hand_7  36 ................gegsklsdeele.llfkefDtdkdGvisfdEFlkl 69 
                                 + g ++ +e+le +l +++D d++G i  +EF+++
  KOO23617.1 171 gtnfilgrhnfhlamsRIGMPPNQEALEkELYDDIDGDGSGIIGDSEFVAW 221
                 999999999999999999999888889988999999999999999999887 PP

  == domain 4  score: 2.9 bits;  conditional E-value: 0.05
   EF-hand_7  16 dgyldkeellrllrkifqga...................gegsklsdeelellfkefDtdkdGvisfdEFlkly 70 
                 d + +k+e+l++l+++                       g ++                    +++ +EF+ + 
  KOO23617.1 283 DASFSKQEFLSMLKRLVNDPgdlwetlrdvvielfntiaGSNK--------------------SVDVTEFQSWL 336
                 6778889988888887655543333333333333333333334....................56666665554 PP

>> EF-hand_8  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.5   0.1     5e-08   0.00015      24      48 ..       6      30 ..       1      32 [. 0.92
   2 !   10.4   0.0   0.00015      0.45      28      54 ..      46      72 ..      44      73 .. 0.93
   3 !    7.4   0.0    0.0013       3.8      29      48 ..      80      99 ..      77     104 .. 0.85
   4 !   11.3   0.0   7.9e-05      0.23       5      50 ..     176     220 ..     175     223 .. 0.86
   5 ?    0.3   0.0      0.21   6.2e+02      18      34 ..     278     297 ..     271     305 .. 0.70
   6 ?   -3.8   0.0       4.1   1.2e+04       4      12 ..     326     334 ..     324     338 .. 0.75

  Alignments for each domain:
  == domain 1  score: 21.5 bits;  conditional E-value: 5e-08
   EF-hand_8 24 seeevdilfrefDtdgdGkisfeEF 48
                s+ee+++lf+ +Dtd++Gkis +E 
  KOO23617.1  6 SKEEIRELFDSIDTDKSGKISMNEL 30
                89*******************9996 PP

  == domain 2  score: 10.4 bits;  conditional E-value: 0.00015
   EF-hand_8 28 vdilfrefDtdgdGkisfeEFcvller 54
                +d++fr+ D  g G+++ +EFc  +e+
  KOO23617.1 46 IDSVFRRYDKSGRGALTITEFCTAAEE 72
                799*******************99876 PP

  == domain 3  score: 7.4 bits;  conditional E-value: 0.0013
   EF-hand_8 29 dilfrefDtdgdGkisfeEF 48
                +++f e+D dg+G +s+ E 
  KOO23617.1 80 HDVFIELDPDGSGQVSYSEM 99
                678899***********995 PP

  == domain 4  score: 11.3 bits;  conditional E-value: 7.9e-05
   EF-hand_8   5 Itreelrrilrilglkkglseeevd.ilfrefDtdgdGkisfeEFcv 50 
                 + r++++ +++ +g++   + e+++ +l + +D dg+G+i+  EF++
  KOO23617.1 176 LGRHNFHLAMSRIGMP--PNQEALEkELYDDIDGDGSGIIGDSEFVA 220
                 57999*****777*99..9999976367789**************96 PP

  == domain 5  score: 0.3 bits;  conditional E-value: 0.21
   EF-hand_8  18 glkk...glseeevdilfre 34 
                 g+++   ++s++e+ +++++
  KOO23617.1 278 GYAGddaSFSKQEFLSMLKR 297
                 55555667777777777664 PP

  == domain 6  score: -3.8 bits;  conditional E-value: 4.1
   EF-hand_8   4 kItreelrr 12 
                 +++++e+++
  KOO23617.1 326 SVDVTEFQS 334
                 578889887 PP

>> EF-hand_5  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.7   0.1   1.5e-08   4.5e-05       1      21 [.      10      30 ..      10      36 .. 0.89
   2 ?    3.1   0.0     0.025        75       1      21 [.      46      66 ..      46      72 .. 0.90
   3 !   10.1   0.0   0.00015      0.44       3      22 ..      81     100 ..      80     103 .. 0.90
   4 !    4.7   0.8    0.0079        24       8      21 ..     205     218 ..     203     222 .. 0.86
   5 ?   -2.8   0.1       1.8   5.4e+03      17      24 ..     287     294 ..     287     295 .. 0.79

  Alignments for each domain:
  == domain 1  score: 22.7 bits;  conditional E-value: 1.5e-08
                HHHHHHHH-SS-SSCE-HHHH CS
   EF-hand_5  1 lkdtFqaiDlNgDGkIskeEL 21
                ++++F+ iD++++GkIs+ EL
  KOO23617.1 10 IRELFDSIDTDKSGKISMNEL 30
                6789****************9 PP

  == domain 2  score: 3.1 bits;  conditional E-value: 0.025
                HHHHHHHH-SS-SSCE-HHHH CS
   EF-hand_5  1 lkdtFqaiDlNgDGkIskeEL 21
                ++ +F++ D+ g G +++ E+
  KOO23617.1 46 IDSVFRRYDKSGRGALTITEF 66
                5679********999999998 PP

  == domain 3  score: 10.1 bits;  conditional E-value: 0.00015
                 HHHHHH-SS-SSCE-HHHHH CS
   EF-hand_5   3 dtFqaiDlNgDGkIskeELk 22 
                 d+F ++D +g+G++s +E k
  KOO23617.1  81 DVFIELDPDGSGQVSYSEMK 100
                 79****************97 PP

  == domain 4  score: 4.7 bits;  conditional E-value: 0.0079
                 H-SS-SSCE-HHHH CS
   EF-hand_5   8 iDlNgDGkIskeEL 21 
                 iD +g+G I  +E+
  KOO23617.1 205 IDGDGSGIIGDSEF 218
                 9********99998 PP

  == domain 5  score: -2.8 bits;  conditional E-value: 1.8
                 -HHHHHHH CS
   EF-hand_5  17 skeELktl 24 
                 sk+E+  +
  KOO23617.1 287 SKQEFLSM 294
                 89***765 PP

>> CheX  Chemotaxis phosphatase CheX
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.0       1.5   4.4e+03      31      57 ..     153     179 ..     141     191 .. 0.71
   2 !   14.3   0.0   1.1e-05     0.034      18      59 ..     285     326 ..     284     338 .. 0.89

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 1.5
        CheX  31 lgedeeeieedvndavgEltNmiaGna 57 
                 l+   +++  d+  a+   tN+i+G+ 
  KOO23617.1 153 LKSCAPARASDLYRAMSGGTNFILGRH 179
                 555566667788888888899999975 PP

  == domain 2  score: 14.3 bits;  conditional E-value: 1.1e-05
        CheX  18 sadeelalkiasalgedeeeieedvndavgEltNmiaGnaks 59 
                 s++++ +l ++++l +d+ +  e ++d+v El N+iaG+ ks
  KOO23617.1 285 SFSKQEFLSMLKRLVNDPGDLWETLRDVVIELFNTIAGSNKS 326
                 678889999999999999999*****************9884 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (442 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       428  (0.0238719); expected 358.6 (0.02)
Passed bias filter:                      349  (0.0194657); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.49u 0.27s 00:00:00.76 Elapsed: 00:00:00.43
# Mc/sec: 3108.03
//
Query:       KOO23618.1  [L=224]
Description: hypothetical protein Ctob_007741 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (224 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       295  (0.0164538); expected 358.6 (0.02)
Passed bias filter:                      144  (0.00803168); expected 358.6 (0.02)
Passed Vit filter:                         9  (0.00050198); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.39u 0.25s 00:00:00.64 Elapsed: 00:00:00.40
# Mc/sec: 1661.38
//
Query:       KOO23619.1  [L=692]
Description: glycoside hydrolase family 5 protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      3e-10   40.0   0.0    9.4e-10   38.4   0.0    1.8  1  Cellulase  Cellulase (glycosyl hydrolase family 5)
  ------ inclusion threshold ------
      0.031   15.2   1.0       0.09   13.7   0.2    2.1  2  CDC37_N    Cdc37 N terminal kinase binding
       0.16   11.5   0.0       0.26   10.9   0.0    1.2  1  DUF4998    Domain of unknown function
       0.18   12.1   0.0         14    6.0   0.0    2.8  2  SMC_hinge  SMC proteins Flexible Hinge Domain


Domain annotation for each model (and alignments):
>> Cellulase  Cellulase (glycosyl hydrolase family 5)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.4   0.0   2.1e-13   9.4e-10       9     274 ..      46     382 ..      39     392 .. 0.65

  Alignments for each domain:
  == domain 1  score: 38.4 bits;  conditional E-value: 2.1e-13
                 EGEEECETTSCGGSHHHHHHHHHHHT-SEEEEEEE.C..TGGTTSSTTTGCTH.......HHHHHHHHHHHHHHHTT-EEEEEEESS............ CS
   Cellulase   9 nlkglstswgnpyttkalidevkdagfntvRlpvs.w..gelvenapdykvde.......nslerveevvkyakenglyvildiHse............ 85 
                 +++ ++ +w   y t++++d++ + g+n+vR+pv+ w  +  v+ ++ y+++          l+ +++++     +g+ ++ld+Hs             
  KOO23619.1  46 AIATMRNHWQH-YLTDEMLDTAVELGINAVRIPVGyWitEPPVGGTSAYEYGFsaegfvtGGLNHLQAMLPKLRTRGITALLDVHSLpcgqacisngls 143
                 56778889975.89*********************536644444444442222334566699************************9998888876666 PP

                 ......................TTTCSSSSTTTTHHHHHHH...................................HHHHHHHHHHHHTTTTTTEE.EE CS
   Cellulase  86 ......................egwltkadgnssedtaeef...................................fkklwtqiAerykkndevvi.fe 126
                                       +                                                      ++l ++iA+   + ++v++   
  KOO23619.1 144 cdapyafaasndsmpgvvvgtiP-----------------RckgehhemehgnystsrtpgavsgivswgdvavesVAALARWIASLPPDLSQVIGaLQ 225
                 66555555555444333333221.................02222222223333333334444444444555444499999******977777775368 PP

                 SSSS--STTCTCCTCHHHTTHHHHHHHHHHHHHHHHTTSSEEEEECHHHHTBHHHHHCT..SGSSSSTTEEEEEEEETTTHHHTGCGS........... CS
   Cellulase 127 lmNEPhgnntgaewtseeadevkayaeeaikaIRavgpnrliivegnswsgnldgavln..dPndsqdnliysvHfYgpsdfaqtefg........... 212
                 ++NEP  n+ g        ++vk+++ +ai a Ra+ ++  ++++ +  + +     ++  +P      l+ +vH Y  +    ++ g           
  KOO23619.1 226 VANEPALNTPG------YLEAVKHFYRRAIRAARAALAELPLVLNFIYPNDRGLDEFMKevKPWG--GALMLDVHWYLNWAGDFKAGGdespdksaraw 316
                 9******7665......4589*****************977777774444443333444689955..89*********988544444477888887766 PP

                 .....HSCTHHHHHHHHHHHHHHHH..HHTTSEEEEEEEESSTTSSH....HHHHHHHHHHHHHHHTTTEEEE CS
   Cellulase 213 .....kdltdktnlaqrledaakyl..vekgipviigEfGgsnadgd....lakeeaekwldylkekgiswiy 274
                      + + ++   a+    +++++    +++pv++gE+ + ++++     ++ ++a +  ++ +e+ +++++
  KOO23619.1 317 dkihfRACHSP---AS----TWDWCskYGNDVPVVLGEWSLATNHDApldlSDATTARELRQMYAEQLAVYTF 382
                 55433323222...33....344441135789********975544456664444445555555555555554 PP

>> CDC37_N  Cdc37 N terminal kinase binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.2     2e-05      0.09       2      16 ..     483     497 ..     482     501 .. 0.90
   2 ?   -1.2   0.0      0.78   3.5e+03      55     103 ..     608     656 ..     593     676 .. 0.64

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 2e-05
     CDC37_N   2 ldYskWDklELSDDs 16 
                 + YskWD++E SDD+
  KOO23619.1 483 VSYSKWDRIETSDDE 497
                 68************8 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 0.78
     CDC37_N  55 reindkllkridkllealkekeveeeevvfkalnesleekkekedkpka 103
                 ++ +d++ + ++kl++a+++ e+  +++ +    e++ +++ +++++k 
  KOO23619.1 608 NSPKDAVVADMHKLMDAINTLEALRTTTNAAHFFEQVCSPSRSDTARKL 656
                 5667888888999999988888777555555555555455555444444 PP

>> DUF4998  Domain of unknown function
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   5.8e-05      0.26      77     130 ..     541     595 ..     528     639 .. 0.80

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 5.8e-05
     DUF4998  77 iidnLeEgsytFsivtydkkgnsSlksevtgevYGdsYqasltnrslksvele.k 130
                 +++ L+E    F  vt   ++ s     +   ++G++Yq +l+nr + ++ +e +
  KOO23619.1 541 VLPALREMVARFVAVTDKRENASNTFRYADIVAFGARYQTELVNRGMVDALCElH 595
                 67899*******999877776666777788999**************99988753 PP

>> SMC_hinge  SMC proteins Flexible Hinge Domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.0   0.0    0.0031        14      36      94 ..     521     579 ..     499     587 .. 0.84
   2 ?    2.9   0.0     0.028   1.3e+02      94     116 ..     668     690 ..     598     691 .. 0.81

  Alignments for each domain:
  == domain 1  score: 6.0 bits;  conditional E-value: 0.0031
   SMC_hinge  36 edeetakkiieflkkknagratflpldr..ikqknkadgandknsgavplidlvevddelr 94 
                 +de+ ak+ i +l+++   ++ +lp+ r  +  +    +++++ s+  + +d+v + ++++
  KOO23619.1 521 SDEALAKRFIGHLQQH--SKVPVLPALRemVARFVAVTDKRENASNTFRYADIVAFGARYQ 579
                 78999***********..89******77778888888888887779999999999998876 PP

  == domain 2  score: 2.9 bits;  conditional E-value: 0.028
   SMC_hinge  94 rkalryllgdtlvvdsldeAeel 116
                 r++lry ++dt v+ +++ +  +
  KOO23619.1 668 RAMLRYCFKDTNVAGDMERCSTI 690
                 67789************999765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (692 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       370  (0.020637); expected 358.6 (0.02)
Passed bias filter:                      345  (0.0192426); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.59u 0.30s 00:00:00.88 Elapsed: 00:00:00.45
# Mc/sec: 4624.19
//
Query:       KOO23620.1  [L=121]
Description: hypothetical protein Ctob_007734 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (121 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       451  (0.0251548); expected 358.6 (0.02)
Passed bias filter:                      348  (0.0194099); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.39u 0.25s 00:00:00.64 Elapsed: 00:00:00.42
# Mc/sec: 874.63
//
Query:       KOO23621.1  [L=933]
Description: hypothetical protein Ctob_007737 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
        1.9    8.9   7.3       0.83   10.0   0.3    3.5  3  DUF1190   Protein of unknown function (DUF1190)


Domain annotation for each model (and alignments):
>> DUF1190  Protein of unknown function (DUF1190)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.1      0.26   4.7e+03      91      91 ..     109     109 ..      32     165 .. 0.53
   2 ?   10.0   0.3   4.6e-05      0.83     112     157 ..     447     493 ..     424     497 .. 0.75
   3 ?    0.9   0.3      0.03   5.3e+02      27     102 ..     764     838 ..     745     888 .. 0.61

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 0.26
     DUF1190  91 s 91 
                 s
  KOO23621.1 109 S 109
                 2 PP

  == domain 2  score: 10.0 bits;  conditional E-value: 4.6e-05
     DUF1190 112 sasgkny.gaassekrtvnvaktalkpkptvtstvsrgGFGssssar 157
                 sa+ +n  + a +++   n ++ta++     ++tv +gGFG++++a 
  KOO23621.1 447 SAATANAeQYAGARSSHLNRPSTAFEARHLWSETVPKGGFGAKAAAA 493
                 3334344355566667888999********************99875 PP

  == domain 3  score: 0.9 bits;  conditional E-value: 0.03
     DUF1190  27 ayaeAqkeaektaPrYasredC.eaefgagqCtq.aqqssgggsffmPlmaGfmlgrllsggggyrsqPlyrsrsres 102
                 a+  A +ea    Pr + +++    ++ ag   + ++ s g++  f+  + Gfm g ++     ++++P    +++  
  KOO23621.1 764 ARSRAGAEAGSCEPRAEAQSAGaTSTHLAGGAREsRRLSGGARPGFISSLGGFMTGPMI---ADWHTAPSAAAKEHIA 838
                 5555555555555665555443133455555555344555667789999*******999...3455555544443333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (933 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       488  (0.0272185); expected 358.6 (0.02)
Passed bias filter:                      217  (0.0121033); expected 358.6 (0.02)
Passed Vit filter:                        12  (0.000669307); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.59u 0.27s 00:00:00.86 Elapsed: 00:00:00.41
# Mc/sec: 6860.58
//
Query:       KOO23622.1  [L=359]
Description: hypothetical protein Ctob_007736 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
  ------ inclusion threshold ------
       0.24   11.1   4.8       0.38   10.4   4.8    1.4  1  DUF4988       Domain of unknown function
       0.86    8.8  11.8        1.2    8.3  11.8    1.2  1  DUF2075       Uncharacterized conserved protein (DUF2075)
          3    7.1  41.3      0.031   13.6  10.3    3.1  3  GAS           Growth-arrest specific micro-tubule binding


Domain annotation for each model (and alignments):
>> DUF4988  Domain of unknown function
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   4.8   6.4e-05      0.38       4     105 ..     179     285 ..     177     308 .. 0.83

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 6.4e-05
     DUF4988   4 dvndlkdrvaaleeq......vkelndniealkklleegkviteveensdgsyvltlsdgktitltqgkdgeakaPvigvdeegyWtvtlngeteelk. 95 
                 ++++l+++va lee+      ++e+n++ e+l ++++e +  te+++++  + + +  d++++t+++ ++  +k  +i ++e  +   +l++e+eel+ 
  KOO23622.1 179 KISELEEEVAKLEEKqqheeeINEMNEEREKLVEIVDEAQKETELKRETSRKLKEEIIDNDRLTVANLNR--IKNLEIEIEETRKLCEKLDDENEELRe 275
                 67777777777764322222299************************99999999************999..778899999999999999999999986 PP

     DUF4988  96 adgekvkavg 105
                 + g+++k  g
  KOO23622.1 276 ELGKSLKDEG 285
                 6677666555 PP

>> DUF2075  Uncharacterized conserved protein (DUF2075)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.3  11.8    0.0002       1.2      29     187 ..     142     304 ..     122     318 .. 0.69

  Alignments for each domain:
  == domain 1  score: 8.3 bits;  conditional E-value: 0.0002
     DUF2075  29 eeertavylsvNhplvlvlrealakkeekkkkkeafeklssfinnlsef.......kkaeekkeepkedvvivDEAhrlltksdqaekqseenqlkelm 120
                 e+e++++  sv+ + ++  +e+ a++e+++ ++ea+ek s++ +++ +        ++ +e++ee++  v ivDEA++ ++     ++++ ++  +e++
  KOO23622.1 142 ESESQHTRSSVSAEMRMQAQEEAAREETDRLREEAMEKISELEEEVAKLeekqqheEEINEMNEEREKLVEIVDEAQKETE----LKRETSRKLKEEII 236
                 56677778899999*************88888888888888888888667778874444455555556677*******999....33445566677899 PP

     DUF2075 121 krakvvvalvDegQelntgeigteeelkklakkleveleekv..hLksqfRvaaseaviewvdalldgk 187
                 ++++++va +     l+ + + t++ l + +++ ++el+e++  +Lk    +aa e+ +e +++ll+++
  KOO23622.1 237 DNDRLTVANLNRIKNLEIEIEETRK-LCEKLDDENEELREELgkSLKDEGASAALEREVEMLRELLSER 304
                 9999999988877777766644444.4444666666666654444554444444555555555555444 PP

>> GAS  Growth-arrest specific micro-tubule binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   2.0      0.17     1e+03      80     124 ..     113     159 ..      99     171 .. 0.62
   2 ?    6.1  13.8     0.001       6.2      23      71 ..     175     222 ..     170     229 .. 0.87
   3 ?   13.6  10.3   5.2e-06     0.031      29     117 ..     229     317 ..     226     323 .. 0.95

  Alignments for each domain:
  == domain 1  score: -1.1 bits;  conditional E-value: 0.17
         GAS  80 yekdkqslknlk.arlk.elekelkdlkwehevleqrfekvekerde 124
                 ye    +l n++ a+++   e+el++l++e+e+ + r +   + r +
  KOO23622.1 113 YEAAARDLVNAEvAKYEdAHERELRALRLESESQHTRSSVSAEMRMQ 159
                 44444445444423333145788899999888888877655555544 PP

  == domain 2  score: 6.1 bits;  conditional E-value: 0.001
         GAS  23 nNLelIkslKeeieelkkkeernekelseisqenkrlkepLkkaeeeve 71 
                 + +e+I +l ee+++l++k+++ e e++e+++e ++l+e + +a++e e
  KOO23622.1 175 EAMEKISELEEEVAKLEEKQQH-EEEINEMNEEREKLVEIVDEAQKETE 222
                 6689*************99887.5689*******************975 PP

  == domain 3  score: 13.6 bits;  conditional E-value: 5.2e-06
         GAS  29 kslKeeieelkkkeernekelseisqenkrlkepLkkaeeeveeLrkqlknyekdkqslknlkarlkelekelkdlkwehevleqrfek 117
                 ++lKeei + ++   +n +++++++ e ++ ++  +k++ e+eeLr++l +  kd  + ++l++++++l + l++ +++ ++l+ r++ 
  KOO23622.1 229 RKLKEEIIDNDRLTVANLNRIKNLEIEIEETRKLCEKLDDENEELREELGKSLKDEGASAALEREVEMLRELLSEREQQVRSLSLRLAD 317
                 79*********************************************************************************999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (359 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      3223  (0.179765); expected 358.6 (0.02)
Passed bias filter:                      766  (0.0427241); expected 358.6 (0.02)
Passed Vit filter:                       156  (0.00870099); expected 17.9 (0.001)
Passed Fwd filter:                        37  (0.0020637); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.94u 0.28s 00:00:01.22 Elapsed: 00:00:00.43
# Mc/sec: 2523.96
//
Query:       KOO23623.1  [L=231]
Description: voltage-gated ion channel superfamily [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.5e-16   60.1   1.0    2.3e-16   59.5   1.0    1.2  1  Ion_trans_2  Ion channel
    0.00023   20.5   0.2       0.06   12.9   0.0    2.6  2  EF-hand_1    EF hand
    0.00082   19.1   0.1      0.027   14.4   0.0    2.6  2  EF-hand_6    EF-hand domain
     0.0014   19.1   0.0       0.18   12.2   0.0    2.3  2  EF-hand_7    EF-hand domain pair
     0.0027   17.1   2.9      0.043   13.3   0.3    2.6  3  EF-hand_5    EF hand
  ------ inclusion threshold ------
      0.073   12.3   0.0      0.095   11.9   0.0    1.1  1  Ion_trans    Ion transport protein


Domain annotation for each model (and alignments):
>> Ion_trans_2  Ion channel
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.5   1.0   7.6e-20   2.3e-16      23      77 ..      50     104 ..      42     106 .. 0.92

  Alignments for each domain:
  == domain 1  score: 59.5 bits;  conditional E-value: 7.6e-20
                  --HHHHHHHHHHHHTTS----SSTT-----HHHHHHHHHHHHHHHHHHHHHHHHH CS
  Ion_trans_2  23 wsfldalYfsfvtltTiGYGdivpetdagrlftivyillGlalfalflavlgkvl 77 
                  w+++d +Y++++t++TiGYGd+ ++t++g++++++++l+G+++f+++ + +  ++
   KOO23623.1  50 WTWIDEFYYALITFLTIGYGDVHAHTKGGKILATIIALTGILCFTALAKEIHAYF 104
                  7*********************************************998887666 PP

>> EF-hand_1  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.9   0.0    0.0075        22      11      23 ..     128     140 ..     120     143 .. 0.87
   2 !   12.9   0.0     2e-05      0.06       2      24 ..     158     180 ..     157     184 .. 0.87

  Alignments for each domain:
  == domain 1  score: 4.9 bits;  conditional E-value: 0.0075
                 TTSSSEEEHHHHH CS
   EF-hand_1  11 kDgdGkIdfeEfk 23 
                 +D +Gk++ eE++
  KOO23623.1 128 QDENGKVTPEEYV 140
                 799********87 PP

  == domain 2  score: 12.9 bits;  conditional E-value: 2e-05
                 HHHHHHHHTTTSSSEEEHHHHHH CS
   EF-hand_1   2 lkeiFrefDkDgdGkIdfeEfke 24 
                 lke F+ +D Dg+G +d ++  +
  KOO23623.1 158 LKEQFKALDMDGSGELDGNDVAK 180
                 7999*************998766 PP

>> EF-hand_6  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.0   0.0     0.088   2.6e+02      11      22 ..     128     139 ..     125     152 .. 0.87
   2 !   14.4   0.0   8.9e-06     0.027       2      24 ..     158     180 ..     157     184 .. 0.90

  Alignments for each domain:
  == domain 1  score: 2.0 bits;  conditional E-value: 0.088
   EF-hand_6  11 kdgdGkidaeEl 22 
                 +d +Gk+++eE 
  KOO23623.1 128 QDENGKVTPEEY 139
                 589******995 PP

  == domain 2  score: 14.4 bits;  conditional E-value: 8.9e-06
   EF-hand_6   2 lreaFklfDkdgdGkidaeElrk 24 
                 l+e Fk++D dg+G++d +++ k
  KOO23623.1 158 LKEQFKALDMDGSGELDGNDVAK 180
                 7899***************9976 PP

>> EF-hand_7  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.7   0.0     0.014        41      36      68 ..     110     141 ..      77     144 .. 0.72
   2 !   12.2   0.0   6.2e-05      0.18       4      30 ..     158     184 ..     156     222 .. 0.85

  Alignments for each domain:
  == domain 1  score: 4.7 bits;  conditional E-value: 0.014
   EF-hand_7  36 gegsklsdeelellfkefDtdkdGvisfdEFlk 68 
                 g+  k+ ++ l +l + + +d +G+++ +E++ 
  KOO23623.1 110 GTS-KSLRQRLVELNEVIEQDENGKVTPEEYVI 141
                 333.34566777777778999******999986 PP

  == domain 2  score: 12.2 bits;  conditional E-value: 6.2e-05
   EF-hand_7   4 lkeaFkelDtdgdgyldkeellrllrk 30 
                 lke Fk+lD dg+g ld +++ +l  +
  KOO23623.1 158 LKEQFKALDMDGSGELDGNDVAKLAAA 184
                 8999****************9987654 PP

>> EF-hand_5  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.5   0.0     0.019        56       8      21 ..     126     139 ..     124     143 .. 0.83
   2 ?   -3.4   0.1       2.8   8.3e+03      14      19 ..     148     153 ..     148     153 .. 0.63
   3 !   13.3   0.3   1.5e-05     0.043       1      17 [.     158     174 ..     158     177 .. 0.90

  Alignments for each domain:
  == domain 1  score: 3.5 bits;  conditional E-value: 0.019
                 H-SS-SSCE-HHHH CS
   EF-hand_5   8 iDlNgDGkIskeEL 21 
                 i  +  Gk+++eE 
  KOO23623.1 126 IEQDENGKVTPEEY 139
                 566899*******6 PP

  == domain 2  score: -3.4 bits;  conditional E-value: 2.8
                 SCE-HH CS
   EF-hand_5  14 GkIske 19 
                 Gk++k+
  KOO23623.1 148 GKVDKD 153
                 777764 PP

  == domain 3  score: 13.3 bits;  conditional E-value: 1.5e-05
                 HHHHHHHH-SS-SSCE- CS
   EF-hand_5   1 lkdtFqaiDlNgDGkIs 17 
                 lk+ F+a+D++g+G ++
  KOO23623.1 158 LKEQFKALDMDGSGELD 174
                 6778**********997 PP

>> Ion_trans  Ion transport protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   3.2e-05     0.095     177     239 ..      54     106 ..      19     110 .. 0.78

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 3.2e-05
                 SSHHHHHHHHHHHHTTSSHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
   Ion_trans 177 dnfftallwlfrlmttegwgdilyatldekskvaliyfvifiilgsflllNlliaviadnfqe 239
                 d+    ++ ++ +  t+g+gd++++t ++k      +++++i l ++l++  l   i  +fqe
  KOO23623.1  54 DE----FYYALITFLTIGYGDVHAHTKGGK------ILATIIALTGILCFTALAKEIHAYFQE 106
                 44....55555566669*************......************998777666666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (231 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       629  (0.0350828); expected 358.6 (0.02)
Passed bias filter:                      571  (0.0318478); expected 358.6 (0.02)
Passed Vit filter:                        56  (0.00312343); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.46u 0.25s 00:00:00.71 Elapsed: 00:00:00.41
# Mc/sec: 1676.70
//
Query:       KOO23624.1  [L=791]
Description: hypothetical protein Ctob_007740 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   1.4e-111  365.1 127.9    1.4e-13   51.2   4.1   13.2 13  VCBS             Repeat domain in Vibrio, Colwellia, Bradyrhi
    1.5e-53  178.5 136.6    3.9e-05   23.7   2.0   13.8 13  FG-GAP           FG-GAP repeat
    1.4e-08   34.7   0.0         14    5.9   0.0    8.5 10  TM_PBP2_N        N-terminal of TM subunit in PBP-dependent AB
    6.3e-07   29.5  38.5         14    6.0   0.1   12.7 13  Dockerin_1       Dockerin type I domain
    1.2e-05   25.2   0.0         27    4.9   0.0    8.9 13  HET-s_218-289    Het-s 218-289
    4.9e-05   22.8  55.5        3.6    6.9   0.2   12.0 12  TcdB_toxin_midN  Insecticide toxin TcdB middle/N-terminal reg
    7.5e-05   22.1   0.0        6.5    5.9   0.0    5.6  5  T4BSS_DotH_IcmK  Putative outer membrane core complex of type
     0.0096   15.4  13.5         38    3.6   0.0    9.0 13  BBS1             Ciliary BBSome complex subunit 1
  ------ inclusion threshold ------
      0.016   15.3   1.0         23    5.1   0.0    5.9  9  Arrestin_N       Arrestin (or S-antigen), N-terminal domain


Domain annotation for each model (and alignments):
>> VCBS  Repeat domain in Vibrio, Colwellia, Bradyrhizobium and Shewanella
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.4   0.8   4.4e-10   8.8e-07      18      60 ..      24      65 ..      18      66 .. 0.87
   2 !   51.2   4.1   7.2e-17   1.4e-13       1      60 [.      55     114 ..      55     115 .. 0.90
   3 !   38.3   2.3   7.3e-13   1.5e-09       6      60 ..     119     173 ..     117     174 .. 0.87
   4 !   48.1   5.6   6.7e-16   1.3e-12       1      60 [.     163     222 ..     163     223 .. 0.87
   5 !   45.8   5.0   3.4e-15   6.8e-12       1      60 [.     212     271 ..     212     272 .. 0.88
   6 !   27.1   0.5   2.4e-09   4.7e-06      15      60 ..     291     335 ..     284     336 .. 0.81
   7 !   30.2   1.3   2.6e-10   5.1e-07       9      60 ..     340     390 ..     337     391 .. 0.82
   8 !   50.8   3.9   9.5e-17   1.9e-13       1      60 [.     380     439 ..     380     440 .. 0.90
   9 !   28.2   0.5   1.1e-09   2.2e-06      15      60 ..     445     501 ..     439     502 .. 0.70
  10 !   47.2   4.2   1.3e-15   2.5e-12       1      60 [.     491     550 ..     491     551 .. 0.88
  11 !   46.1   4.0   2.7e-15   5.3e-12       1      60 [.     540     599 ..     540     600 .. 0.90
  12 !   47.6   3.8   9.5e-16   1.9e-12       1      60 [.     589     648 ..     589     649 .. 0.86
  13 !   45.6   2.6     4e-15     8e-12       1      60 [.     638     698 ..     638     699 .. 0.84

  Alignments for each domain:
  == domain 1  score: 29.4 bits;  conditional E-value: 4.4e-10
        VCBS 18 lrvyrnngdGtftdvtktslggsgggt.gvavgDlDgDGdlDll 60
                 +v++n gdGtf   t+++l+g+g+ t ++a++D+DgDGdlD+l
  KOO23624.1 24 GQVLLNAGDGTF--LTSIELPGGGAVTqSIAAADVDGDGDLDVL 65
                689999999987..789999998888879*************98 PP

  == domain 2  score: 51.2 bits;  conditional E-value: 7.2e-17
        VCBS   1 DldgDGrlDlvvan.dgglrvyrnngdGtftdvtktslggsgggt.gvavgDlDgDGdlDll 60 
                 D+dgDG+lD++++n +++ ++++n gdGtf  +t+++l+g+ ++t ++a++D+DgDGdlD+l
  KOO23624.1  55 DVDGDGDLDVLLGNfNSPSQLLLNAGDGTF--PTSIELPGGSAYTlSIAAADVDGDGDLDVL 114
                 9*************8899*******99986..78999999666666**************98 PP

  == domain 3  score: 38.3 bits;  conditional E-value: 7.3e-13
        VCBS   6 GrlDlvvandgg.lrvyrnngdGtftdvtktslggsgggt.gvavgDlDgDGdlDll 60 
                 G+lD+++++dg+  rv++n gdGtf  +t+++l+g+ ++t ++a++D+DgDGdlDll
  KOO23624.1 119 GDLDVLLGGDGSlSRVLLNAGDGTF--PTSIELPGGSAYTnSIAAADVDGDGDLDLL 173
                 99*******9776999****99986..789988886666659*************98 PP

  == domain 4  score: 48.1 bits;  conditional E-value: 6.7e-16
        VCBS   1 DldgDGrlDlvvand.gglrvyrnngdGtftdvtktslgg.sgggtgvavgDlDgDGdlDll 60 
                 D+dgDG+lDl+++nd ++ ++++n gdGtf  +t+++l++ s   ++++++D+DgDGdlD+l
  KOO23624.1 163 DVDGDGDLDLLLGNDgSPSQLLLNAGDGTF--PTSIELPDgSASTFSIVAADVDGDGDLDVL 222
                 9************963779******99986..78998888455556**************98 PP

  == domain 5  score: 45.8 bits;  conditional E-value: 3.4e-15
        VCBS   1 DldgDGrlDlvvan.dgglrvyrnngdGtftdvtktslggsgggtgvavgDlDgDGdlDll 60 
                 D+dgDG+lD++++n  ++ ++++n gdGtf + +    ggs   t++a++D+DgDGdlD+l
  KOO23624.1 212 DVDGDGDLDVLLGNfFSPSQLLLNAGDGTF-PMSIDLPGGSAFTTSIAAADMDGDGDLDVL 271
                 9*************88************99.45555566688888**************98 PP

  == domain 6  score: 27.1 bits;  conditional E-value: 2.4e-09
        VCBS  15 dgglrvyrnngdGtftdvtktslgg.sgggtgvavgDlDgDGdlDll 60 
                 +++ rv++n gdGtf  +t++ l+      +++a++D+DgDGdlD+l
  KOO23624.1 291 NSPSRVLLNAGDGTF--PTSVGLPVdCAFTRSIAAADVDGDGDLDVL 335
                 456899****99986..788888885556669*************98 PP

  == domain 7  score: 30.2 bits;  conditional E-value: 2.6e-10
        VCBS   9 DlvvandgglrvyrnngdGtftdvtktslggsgggt.gvavgDlDgDGdlDll 60 
                 D++   d++ rv++n   G  t+ t+++l+g+g++t ++a++D+DgDGdlD+l
  KOO23624.1 340 DIIGNIDSPSRVLLNADGG--TFLTSIELPGGGAYTlSIAAADVDGDGDLDVL 390
                 555554999******8555..6689999999888887**************98 PP

  == domain 8  score: 50.8 bits;  conditional E-value: 9.5e-17
        VCBS   1 DldgDGrlDlvvan.dgglrvyrnngdGtftdvtktslggsgggt.gvavgDlDgDGdlDll 60 
                 D+dgDG+lD++++n +++ rv++n gdGtf  +t+++l+g+ + t ++a++D+DgDGdlD+l
  KOO23624.1 380 DVDGDGDLDVLLGNfNSPSRVLLNAGDGTF--PTSIELPGGSALTrSIAAADVDGDGDLDVL 439
                 9*************8899*******99987..788988886666559*************98 PP

  == domain 9  score: 28.2 bits;  conditional E-value: 1.1e-09
        VCBS  15 dgglrvyrnngdGtft...........dvtktslggsgggtgvavgDlDgDGdlDll 60 
                  ++ rv++n gdGtf              ++ +l+g+ g +++a +D+DgDGdlD+l
  KOO23624.1 445 GSPSRVLLNAGDGTFPtsielpggstsTTWMAELPGGTGTYSIAGADIDGDGDLDVL 501
                 46789********98754444444322223345666777779*************98 PP

  == domain 10  score: 47.2 bits;  conditional E-value: 1.3e-15
        VCBS   1 DldgDGrlDlvvan.dgglrvyrnngdGtftdvtktslggsgggt.gvavgDlDgDGdlDll 60 
                 D+dgDG+lD++++n + + +v++n+g Gtf   t+++l+g+ ++t ++a++D+D DGdlD+l
  KOO23624.1 491 DIDGDGDLDVLLGNnNKPSQVLINTGGGTF--LTSIELPGGSAYTlSIAAADVDDDGDLDVL 550
                 9************85788*******98876..78898888666666**************98 PP

  == domain 11  score: 46.1 bits;  conditional E-value: 2.7e-15
        VCBS   1 DldgDGrlDlvvan.dgglrvyrnngdGtftdvtktslggsgggt.gvavgDlDgDGdlDll 60 
                 D+d DG+lD++++n +++ rv++n gdGtf  +t+++l+g+ ++t ++a++D+DgDG lDll
  KOO23624.1 540 DVDDDGDLDVLLGNlNSPSRVLLNAGDGTF--PTSIELPGGSAYTnSIAAADVDGDGELDLL 599
                 9************************99987..788988886666649*************98 PP

  == domain 12  score: 47.6 bits;  conditional E-value: 9.5e-16
        VCBS   1 DldgDGrlDlvvand.gglrvyrnngdGtftdvtktslggsgggt.gvavgDlDgDGdlDll 60 
                 D+dgDG lDl+++nd ++ ++++n g Gtf  +t+++l+g+ +gt ++a++D+DgDGdlD+l
  KOO23624.1 589 DVDGDGELDLLLGNDgSPSQLLLNAGGGTF--PTSIELPGGSAGTnSIAAADVDGDGDLDVL 648
                 9************96366999999988765..899999996666659*************98 PP

  == domain 13  score: 45.6 bits;  conditional E-value: 4e-15
        VCBS   1 DldgDGrlDlvvan.dgglrvyrnngdGtftdvtktslggsgggtgvavgDlDgDGdlDll 60 
                 D+dgDG+lD++++n +++ rv++n gdGtf  + +  +gg    +++av+D+D DG lD+l
  KOO23624.1 638 DVDGDGDLDVLLGNfNSPSRVLLNAGDGTFPTSIELLSGGRALTRSIAVADMDADGNLDVL 698
                 9*************8999*********9985544444555555568*************98 PP

>> FG-GAP  FG-GAP repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.3   1.6   1.1e-07   0.00022       4      22 ..      50      68 ..      48      80 .. 0.85
   2 !   11.3  10.7   0.00015      0.29       4      22 ..      99     117 ..      97     132 .. 0.86
   3 !   22.2   3.3   5.8e-08   0.00012       3      29 ..     157     179 ..     155     183 .. 0.88
   4 !   18.0   3.0   1.1e-06    0.0023       3      22 ..     206     225 ..     204     239 .. 0.85
   5 !   23.7   2.0     2e-08   3.9e-05       1      29 [.     253     277 ..     253     289 .. 0.89
   6 !   21.3   2.9   1.1e-07   0.00022       1      21 [.     317     337 ..     317     351 .. 0.90
   7 !   19.6   3.2   3.7e-07   0.00073       4      22 ..     375     393 ..     373     406 .. 0.83
   8 !   20.4   2.4   2.1e-07   0.00042       3      24 ..     423     444 ..     421     456 .. 0.85
   9 !   22.3   2.4   5.1e-08    0.0001       2      26 ..     484     507 ..     483     516 .. 0.85
  10 !   12.4   4.3   6.8e-05      0.14       4      22 ..     535     553 ..     533     567 .. 0.83
  11 !   21.0   3.1   1.4e-07   0.00027       3      29 ..     583     605 ..     581     616 .. 0.87
  12 !   20.3   4.2   2.3e-07   0.00045       2      22 ..     631     651 ..     630     664 .. 0.82
  13 !   16.6   1.1   3.2e-06    0.0064       3      29 ..     682     704 ..     680     706 .. 0.89

  Alignments for each domain:
  == domain 1  score: 21.3 bits;  conditional E-value: 1.1e-07
                SEEEESTSSSSS-EEEEEE CS
      FG-GAP  4 slavgDvNGDGyaDLavGA 22
                s+a++Dv+GDG  D+++G 
  KOO23624.1 50 SIAAADVDGDGDLDVLLGN 68
                89****************4 PP

  == domain 2  score: 11.3 bits;  conditional E-value: 0.00015
                 SEEEESTSSSSS-EEEEEE CS
      FG-GAP   4 slavgDvNGDGyaDLavGA 22 
                 s+a++Dv+GDG  D+++G 
  KOO23624.1  99 SIAAADVDGDGDLDVLLGN 117
                 89****************3 PP

  == domain 3  score: 22.2 bits;  conditional E-value: 5.8e-08
                 SSEEEESTSSSSS-EEEEEETT-ETCS CS
      FG-GAP   3 yslavgDvNGDGyaDLavGApeskgga 29 
                 +s+a++Dv+GDG  DL++G    ++g+
  KOO23624.1 157 NSIAAADVDGDGDLDLLLG----NDGS 179
                 79*****************....6665 PP

  == domain 4  score: 18.0 bits;  conditional E-value: 1.1e-06
                 SSEEEESTSSSSS-EEEEEE CS
      FG-GAP   3 yslavgDvNGDGyaDLavGA 22 
                  s+ ++Dv+GDG  D+++G 
  KOO23624.1 206 FSIVAADVDGDGDLDVLLGN 225
                 5899***************4 PP

  == domain 5  score: 23.7 bits;  conditional E-value: 2e-08
                 TTSSEEEESTSSSSS-EEEEEETT-ETCS CS
      FG-GAP   1 fGyslavgDvNGDGyaDLavGApeskgga 29 
                 f +s+a++D++GDG  D+++G    ++++
  KOO23624.1 253 FTTSIAAADMDGDGDLDVLLG----NYFD 277
                 889******************....5544 PP

  == domain 6  score: 21.3 bits;  conditional E-value: 1.1e-07
                 TTSSEEEESTSSSSS-EEEEE CS
      FG-GAP   1 fGyslavgDvNGDGyaDLavG 21 
                 f  s+a++Dv+GDG  D+++G
  KOO23624.1 317 FTRSIAAADVDGDGDLDVLLG 337
                 788****************** PP

  == domain 7  score: 19.6 bits;  conditional E-value: 3.7e-07
                 SEEEESTSSSSS-EEEEEE CS
      FG-GAP   4 slavgDvNGDGyaDLavGA 22 
                 s+a++Dv+GDG  D+++G 
  KOO23624.1 375 SIAAADVDGDGDLDVLLGN 393
                 89****************3 PP

  == domain 8  score: 20.4 bits;  conditional E-value: 2.1e-07
                 SSEEEESTSSSSS-EEEEEETT CS
      FG-GAP   3 yslavgDvNGDGyaDLavGApe 24 
                  s+a++Dv+GDG  D+++G ++
  KOO23624.1 423 RSIAAADVDGDGDLDVLLGISY 444
                 699****************654 PP

  == domain 9  score: 22.3 bits;  conditional E-value: 5.1e-08
                 TSSEEEESTSSSSS-EEEEEETT-E CS
      FG-GAP   2 GyslavgDvNGDGyaDLavGApesk 26 
                  ys+a +D++GDG  D+++G +++k
  KOO23624.1 484 TYSIAGADIDGDGDLDVLLG-NNNK 507
                 69******************.3344 PP

  == domain 10  score: 12.4 bits;  conditional E-value: 6.8e-05
                 SEEEESTSSSSS-EEEEEE CS
      FG-GAP   4 slavgDvNGDGyaDLavGA 22 
                 s+a++Dv+ DG  D+++G 
  KOO23624.1 535 SIAAADVDDDGDLDVLLGN 553
                 89****************3 PP

  == domain 11  score: 21.0 bits;  conditional E-value: 1.4e-07
                 SSEEEESTSSSSS-EEEEEETT-ETCS CS
      FG-GAP   3 yslavgDvNGDGyaDLavGApeskgga 29 
                 +s+a++Dv+GDG  DL++G    ++g+
  KOO23624.1 583 NSIAAADVDGDGELDLLLG----NDGS 605
                 79*****************....6664 PP

  == domain 12  score: 20.3 bits;  conditional E-value: 2.3e-07
                 TSSEEEESTSSSSS-EEEEEE CS
      FG-GAP   2 GyslavgDvNGDGyaDLavGA 22 
                  +s+a++Dv+GDG  D+++G 
  KOO23624.1 631 TNSIAAADVDGDGDLDVLLGN 651
                 579*****************3 PP

  == domain 13  score: 16.6 bits;  conditional E-value: 3.2e-06
                 SSEEEESTSSSSS-EEEEEETT-ETCS CS
      FG-GAP   3 yslavgDvNGDGyaDLavGApeskgga 29 
                  s+av+D++ DG  D+++G    ++g+
  KOO23624.1 682 RSIAVADMDADGNLDVLLG----NDGT 704
                 699****************....8776 PP

>> TM_PBP2_N  N-terminal of TM subunit in PBP-dependent ABC transporters
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.4   0.0      0.01        20      44      75 ..      89     120 ..      85     128 .. 0.83
   2 ?    2.9   0.0     0.062   1.2e+02      44      72 ..     148     176 ..     144     182 .. 0.88
   3 ?   -2.3   0.0       2.6   5.1e+03      46      70 ..     199     223 ..     195     225 .. 0.80
   4 ?    1.1   0.0      0.22   4.3e+02      45      70 ..     247     272 ..     243     278 .. 0.89
   5 ?   -2.3   0.0       2.5     5e+03      51      74 ..     317     340 ..     314     342 .. 0.85
   6 ?    3.3   0.0     0.044        88      45      71 ..     366     392 ..     362     399 .. 0.88
   7 ?   -4.0   0.0       8.6   1.7e+04      53      73 ..     485     505 ..     484     508 .. 0.79
   8 !    5.9   0.0    0.0069        14      44      71 ..     525     552 ..     521     560 .. 0.89
   9 ?    2.1   0.0       0.1   2.1e+02      44      72 ..     574     602 ..     570     608 .. 0.88
  10 ?   -2.6   0.0       3.1   6.1e+03      52      73 ..     681     702 ..     672     705 .. 0.77

  Alignments for each domain:
  == domain 1  score: 5.4 bits;  conditional E-value: 0.01
   TM_PBP2_N  44 rvedskeYalsvatkgsettgdlvllltdpet 75 
                 + ++  +Y+ls+a+ + + +gdl +ll +  +
  KOO23624.1  89 ELPGGSAYTLSIAAADVDGDGDLDVLLGNFGD 120
                 579999*******************9977655 PP

  == domain 2  score: 2.9 bits;  conditional E-value: 0.062
   TM_PBP2_N  44 rvedskeYalsvatkgsettgdlvllltd 72 
                 + ++  +Y+ s+a+ + + +gdl lll +
  KOO23624.1 148 ELPGGSAYTNSIAAADVDGDGDLDLLLGN 176
                 579999*******************9966 PP

  == domain 3  score: -2.3 bits;  conditional E-value: 2.6
   TM_PBP2_N  46 edskeYalsvatkgsettgdlvlll 70 
                 +d  + ++s+++ + + +gdl +ll
  KOO23624.1 199 PDGSASTFSIVAADVDGDGDLDVLL 223
                 666777889999999999**99997 PP

  == domain 4  score: 1.1 bits;  conditional E-value: 0.22
   TM_PBP2_N  45 vedskeYalsvatkgsettgdlvlll 70 
                  ++  +++ s+a+ + + +gdl +ll
  KOO23624.1 247 LPGGSAFTTSIAAADMDGDGDLDVLL 272
                 589999****************9998 PP

  == domain 5  score: -2.3 bits;  conditional E-value: 2.5
   TM_PBP2_N  51 Yalsvatkgsettgdlvllltdpe 74 
                 ++ s+a+ + + +gdl +ll +++
  KOO23624.1 317 FTRSIAAADVDGDGDLDVLLGNND 340
                 677899999999****99998775 PP

  == domain 6  score: 3.3 bits;  conditional E-value: 0.044
   TM_PBP2_N  45 vedskeYalsvatkgsettgdlvlllt 71 
                  ++  +Y+ls+a+ + + +gdl +ll 
  KOO23624.1 366 LPGGGAYTLSIAAADVDGDGDLDVLLG 392
                 689999****************99985 PP

  == domain 7  score: -4.0 bits;  conditional E-value: 8.6
   TM_PBP2_N  53 lsvatkgsettgdlvllltdp 73 
                 +s+a  +++ +gdl +ll ++
  KOO23624.1 485 YSIAGADIDGDGDLDVLLGNN 505
                 577888889999999999776 PP

  == domain 8  score: 5.9 bits;  conditional E-value: 0.0069
   TM_PBP2_N  44 rvedskeYalsvatkgsettgdlvlllt 71 
                 + ++  +Y+ls+a+ + +++gdl +ll 
  KOO23624.1 525 ELPGGSAYTLSIAAADVDDDGDLDVLLG 552
                 579999******************9985 PP

  == domain 9  score: 2.1 bits;  conditional E-value: 0.1
   TM_PBP2_N  44 rvedskeYalsvatkgsettgdlvllltd 72 
                 + ++  +Y+ s+a+ + + +g+l lll +
  KOO23624.1 574 ELPGGSAYTNSIAAADVDGDGELDLLLGN 602
                 579999******************99966 PP

  == domain 10  score: -2.6 bits;  conditional E-value: 3.1
   TM_PBP2_N  52 alsvatkgsettgdlvllltdp 73 
                 + s+a+ + +++g+l +ll + 
  KOO23624.1 681 TRSIAVADMDADGNLDVLLGND 702
                 5688899999999999998665 PP

>> Dockerin_1  Dockerin type I domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.0   0.1    0.0071        14      27      46 ..      44      63 ..      27      65 .. 0.80
   2 ?    3.8   0.0     0.034        68      34      46 ..     100     112 ..      88     114 .. 0.81
   3 ?    4.8   0.1     0.017        33      31      45 ..     156     170 ..     134     173 .. 0.83
   4 ?    2.7   0.1     0.075   1.5e+02      36      45 ..     210     219 ..     196     222 .. 0.78
   5 ?    3.8   0.1     0.034        67      29      46 ..     252     269 ..     233     271 .. 0.83
   6 ?    3.6   0.3     0.039        78      34      46 ..     321     333 ..     315     341 .. 0.84
   7 ?    3.7   0.0     0.037        73      34      46 ..     376     388 ..     362     390 .. 0.83
   8 ?    4.4   0.1     0.022        43      31      46 ..     422     437 ..     403     439 .. 0.83
   9 ?    0.2   0.1      0.46   9.1e+02      34      45 ..     487     498 ..     478     501 .. 0.74
  10 ?    1.2   0.1      0.21   4.3e+02      34      45 ..     536     547 ..     526     550 .. 0.77
  11 ?    5.4   0.0     0.011        22      31      46 ..     582     597 ..     561     599 .. 0.83
  12 ?    5.5   0.1      0.01        20      27      46 ..     627     646 ..     610     648 .. 0.83
  13 ?    0.5   0.0      0.37   7.3e+02      31      46 ..     681     696 ..     671     698 .. 0.75

  Alignments for each domain:
  == domain 1  score: 6.0 bits;  conditional E-value: 0.0071
                BTTSCCCHGGGSTT-SSCES CS
  Dockerin_1 27 gqssssngkaaDvNgDGrvn 46
                g   ++  +aaDv+gDG  +
  KOO23624.1 44 GGAVTQSIAAADVDGDGDLD 63
                667788999********865 PP

  == domain 2  score: 3.8 bits;  conditional E-value: 0.034
                 HGGGSTT-SSCES CS
  Dockerin_1  34 gkaaDvNgDGrvn 46 
                  +aaDv+gDG  +
  KOO23624.1 100 IAAADVDGDGDLD 112
                 6899*****9765 PP

  == domain 3  score: 4.8 bits;  conditional E-value: 0.017
                 CCCHGGGSTT-SSCE CS
  Dockerin_1  31 ssngkaaDvNgDGrv 45 
                 ++  +aaDv+gDG  
  KOO23624.1 156 TNSIAAADVDGDGDL 170
                 677899*******76 PP

  == domain 4  score: 2.7 bits;  conditional E-value: 0.075
                 GGSTT-SSCE CS
  Dockerin_1  36 aaDvNgDGrv 45 
                 aaDv+gDG  
  KOO23624.1 210 AADVDGDGDL 219
                 7999999975 PP

  == domain 5  score: 3.8 bits;  conditional E-value: 0.034
                 TSCCCHGGGSTT-SSCES CS
  Dockerin_1  29 ssssngkaaDvNgDGrvn 46 
                   ++  +aaD++gDG  +
  KOO23624.1 252 AFTTSIAAADMDGDGDLD 269
                 5677889********865 PP

  == domain 6  score: 3.6 bits;  conditional E-value: 0.039
                 HGGGSTT-SSCES CS
  Dockerin_1  34 gkaaDvNgDGrvn 46 
                  +aaDv+gDG  +
  KOO23624.1 321 IAAADVDGDGDLD 333
                 6799****99765 PP

  == domain 7  score: 3.7 bits;  conditional E-value: 0.037
                 HGGGSTT-SSCES CS
  Dockerin_1  34 gkaaDvNgDGrvn 46 
                  +aaDv+gDG  +
  KOO23624.1 376 IAAADVDGDGDLD 388
                 6799****99765 PP

  == domain 8  score: 4.4 bits;  conditional E-value: 0.022
                 CCCHGGGSTT-SSCES CS
  Dockerin_1  31 ssngkaaDvNgDGrvn 46 
                 +   +aaDv+gDG  +
  KOO23624.1 422 TRSIAAADVDGDGDLD 437
                 566789******9765 PP

  == domain 9  score: 0.2 bits;  conditional E-value: 0.46
                 HGGGSTT-SSCE CS
  Dockerin_1  34 gkaaDvNgDGrv 45 
                  + aD++gDG  
  KOO23624.1 487 IAGADIDGDGDL 498
                 567899999975 PP

  == domain 10  score: 1.2 bits;  conditional E-value: 0.21
                 HGGGSTT-SSCE CS
  Dockerin_1  34 gkaaDvNgDGrv 45 
                  +aaDv+ DG  
  KOO23624.1 536 IAAADVDDDGDL 547
                 578899988875 PP

  == domain 11  score: 5.4 bits;  conditional E-value: 0.011
                 CCCHGGGSTT-SSCES CS
  Dockerin_1  31 ssngkaaDvNgDGrvn 46 
                 ++  +aaDv+gDG+ +
  KOO23624.1 582 TNSIAAADVDGDGELD 597
                 677899*******865 PP

  == domain 12  score: 5.5 bits;  conditional E-value: 0.01
                 BTTSCCCHGGGSTT-SSCES CS
  Dockerin_1  27 gqssssngkaaDvNgDGrvn 46 
                 g+  ++  +aaDv+gDG  +
  KOO23624.1 627 GSAGTNSIAAADVDGDGDLD 646
                 556678899********865 PP

  == domain 13  score: 0.5 bits;  conditional E-value: 0.37
                 CCCHGGGSTT-SSCES CS
  Dockerin_1  31 ssngkaaDvNgDGrvn 46 
                 +   + aD++ DG+ +
  KOO23624.1 681 TRSIAVADMDADGNLD 696
                 5667889*****9865 PP

>> HET-s_218-289  Het-s 218-289
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.0   0.0      0.22   4.4e+02       8      29 ..      50      71 ..      46      82 .. 0.82
   2 ?   -0.9   0.0      0.84   1.7e+03      10      26 ..     101     117 ..      97     125 .. 0.90
   3 ?   -1.0   0.0      0.93   1.8e+03      10      29 ..     160     179 ..     156     188 .. 0.83
   4 ?    4.9   0.0     0.014        27      10      33 ..     209     232 ..     205     240 .. 0.87
   5 ?    0.4   0.0      0.34   6.7e+02       7      28 ..     255     276 ..     251     282 .. 0.86
   6 ?   -0.4   0.0      0.59   1.2e+03      10      26 ..     322     338 ..     318     339 .. 0.87
   7 ?   -0.2   0.0      0.52     1e+03      10      27 ..     377     394 ..     373     404 .. 0.86
   8 ?   -2.4   0.0       2.6   5.2e+03      11      64 ..     427     444 ..     421     445 .. 0.56
   9 ?   -2.2   0.0       2.2   4.4e+03      12      27 ..     490     505 ..     487     507 .. 0.86
  10 ?   -2.5   0.0       2.8   5.6e+03      10      26 ..     537     553 ..     535     559 .. 0.84
  11 ?   -1.3   0.0       1.1   2.2e+03      10      29 ..     586     605 ..     582     613 .. 0.83
  12 ?    0.3   0.0      0.36   7.2e+02      10      27 ..     635     652 ..     629     662 .. 0.83
  13 ?   -1.6   0.0       1.5   2.9e+03      11      38 ..     686     713 ..     679     720 .. 0.75

  Alignments for each domain:
  == domain 1  score: 1.0 bits;  conditional E-value: 0.22
                   XXXXXXXXXXXXXXXXXXXXXX CS
  HET-s_218-289  8 rNsakdikgeesarvrvGnefs 29
                      a+d+ g+++ +v +Gn  s
     KOO23624.1 50 SIAAADVDGDGDLDVLLGNFNS 71
                   67899*************9655 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 0.84
                    XXXXXXXXXXXXXXXXX CS
  HET-s_218-289  10 sakdikgeesarvrvGn 26 
                     a+d+ g+++ +v +Gn
     KOO23624.1 101 AAADVDGDGDLDVLLGN 117
                    689999*********99 PP

  == domain 3  score: -1.0 bits;  conditional E-value: 0.93
                    XXXXXXXXXXXXXXXXXXXX CS
  HET-s_218-289  10 sakdikgeesarvrvGnefs 29 
                     a+d+ g+++ +  +Gn+ s
     KOO23624.1 160 AAADVDGDGDLDLLLGNDGS 179
                    6999*************866 PP

  == domain 4  score: 4.9 bits;  conditional E-value: 0.014
                    XXXXXXXXXXXXXXXXXXXXXXXX CS
  HET-s_218-289  10 sakdikgeesarvrvGnefseeal 33 
                     a+d+ g+++ +v +Gn fs + l
     KOO23624.1 209 VAADVDGDGDLDVLLGNFFSPSQL 232
                    699****************97765 PP

  == domain 5  score: 0.4 bits;  conditional E-value: 0.34
                    XXXXXXXXXXXXXXXXXXXXXX CS
  HET-s_218-289   7 grNsakdikgeesarvrvGnef 28 
                    +   a+d  g+++ +v +Gn f
     KOO23624.1 255 TSIAAADMDGDGDLDVLLGNYF 276
                    667899999***********98 PP

  == domain 6  score: -0.4 bits;  conditional E-value: 0.59
                    XXXXXXXXXXXXXXXXX CS
  HET-s_218-289  10 sakdikgeesarvrvGn 26 
                     a+d+ g+++ +v +Gn
     KOO23624.1 322 AAADVDGDGDLDVLLGN 338
                    6899************9 PP

  == domain 7  score: -0.2 bits;  conditional E-value: 0.52
                    XXXXXXXXXXXXXXXXXX CS
  HET-s_218-289  10 sakdikgeesarvrvGne 27 
                     a+d+ g+++ +v +Gn 
     KOO23624.1 377 AAADVDGDGDLDVLLGNF 394
                    6999************95 PP

  == domain 8  score: -2.4 bits;  conditional E-value: 2.6
                    XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
  HET-s_218-289  11 akdikgeesarvrvGnefseealqqstgirdrttNsvdevsakgssrVhIGnrY 64 
                    a+d                                    v+++g+  V  G +Y
     KOO23624.1 427 AAD------------------------------------VDGDGDLDVLLGISY 444
                    444....................................555555555555555 PP

  == domain 9  score: -2.2 bits;  conditional E-value: 2.2
                    XXXXXXXXXXXXXXXX CS
  HET-s_218-289  12 kdikgeesarvrvGne 27 
                    +di g+++ +v +Gn+
     KOO23624.1 490 ADIDGDGDLDVLLGNN 505
                    5899999999999995 PP

  == domain 10  score: -2.5 bits;  conditional E-value: 2.8
                    XXXXXXXXXXXXXXXXX CS
  HET-s_218-289  10 sakdikgeesarvrvGn 26 
                     a+d+  +++ +v +Gn
     KOO23624.1 537 AAADVDDDGDLDVLLGN 553
                    58899999999999999 PP

  == domain 11  score: -1.3 bits;  conditional E-value: 1.1
                    XXXXXXXXXXXXXXXXXXXX CS
  HET-s_218-289  10 sakdikgeesarvrvGnefs 29 
                     a+d+ g+++ +  +Gn+ s
     KOO23624.1 586 AAADVDGDGELDLLLGNDGS 605
                    6999*************865 PP

  == domain 12  score: 0.3 bits;  conditional E-value: 0.36
                    XXXXXXXXXXXXXXXXXX CS
  HET-s_218-289  10 sakdikgeesarvrvGne 27 
                     a+d+ g+++ +v +Gn 
     KOO23624.1 635 AAADVDGDGDLDVLLGNF 652
                    5999************95 PP

  == domain 13  score: -1.6 bits;  conditional E-value: 1.5
                    XXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
  HET-s_218-289  11 akdikgeesarvrvGnefseealqqstg 38 
                    ++d  ++++ +v +Gn+ + + l+ s++
     KOO23624.1 686 VADMDADGNLDVLLGNDGTPSRLMPSIR 713
                    5677788999999999977777776665 PP

>> TcdB_toxin_midN  Insecticide toxin TcdB middle/N-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.5   0.5     0.041        82      31      46 ..      51      66 ..      36      74 .. 0.81
   2 ?    4.3   0.2     0.011        22      14      46 ..      84     115 ..      71     123 .. 0.75
   3 !    5.6   0.2    0.0047       9.3      14      46 ..     143     174 ..     131     181 .. 0.71
   4 !    5.4   0.2    0.0054        11      11      46 ..     189     223 ..     179     231 .. 0.81
   5 !    5.7   0.4    0.0042       8.4      24      46 ..     250     272 ..     230     277 .. 0.74
   6 !    6.2   0.1     0.003       5.9      30      82 ..     320     374 ..     298     377 .. 0.63
   7 ?    1.9   0.7     0.062   1.2e+02      31      46 ..     376     391 ..     367     400 .. 0.84
   8 !    6.9   0.2    0.0018       3.6      15      51 ..     410     445 ..     397     456 .. 0.74
   9 !    6.4   0.2    0.0026       5.2      28      83 ..     484     535 ..     466     551 .. 0.75
  10 !    6.2   0.1     0.003       5.9      14      46 ..     569     600 ..     558     608 .. 0.71
  11 ?    4.1   0.3     0.013        26      23      46 ..     625     649 ..     612     658 .. 0.73
  12 ?    1.9   0.1     0.062   1.2e+02      11      46 ..     664     699 ..     654     708 .. 0.81

  Alignments for each domain:
  == domain 1  score: 2.5 bits;  conditional E-value: 0.041
  TcdB_toxin_midN 31 lslaDldGdGladlvl 46
                     + +aD+dGdG +d++l
       KOO23624.1 51 IAAADVDGDGDLDVLL 66
                     679**********876 PP

  == domain 2  score: 4.3 bits;  conditional E-value: 0.011
  TcdB_toxin_midN  14 kpetirvgtstsvedtnlslaDldGdGladlvl 46 
                       p++i+    +s     + +aD+dGdG +d++l
       KOO23624.1  84 FPTSIELPG-GSAYTLSIAAADVDGDGDLDVLL 115
                      566665544.5555667899**********875 PP

  == domain 3  score: 5.6 bits;  conditional E-value: 0.0047
  TcdB_toxin_midN  14 kpetirvgtstsvedtnlslaDldGdGladlvl 46 
                       p++i+    +s     + +aD+dGdG +dl+l
       KOO23624.1 143 FPTSIELPG-GSAYTNSIAAADVDGDGDLDLLL 174
                      555555433.3333334799**********987 PP

  == domain 4  score: 5.4 bits;  conditional E-value: 0.0054
  TcdB_toxin_midN  11 dfkkpetirvgtstsvedtnlslaDldGdGladlvl 46 
                      d + p++i+    +s +   + +aD+dGdG +d++l
       KOO23624.1 189 DGTFPTSIELPD-GSASTFSIVAADVDGDGDLDVLL 223
                      556788888877.778888899***********875 PP

  == domain 5  score: 5.7 bits;  conditional E-value: 0.0042
  TcdB_toxin_midN  24 tsvedtnlslaDldGdGladlvl 46 
                      +s   t + +aD+dGdG +d++l
       KOO23624.1 250 GSAFTTSIAAADMDGDGDLDVLL 272
                      4445578999**********775 PP

  == domain 6  score: 6.2 bits;  conditional E-value: 0.003
  TcdB_toxin_midN  30 nlslaDldGdGladlvltipsagtgavqkatsllgkp...gLLkkidnelGgttev 82 
                       + +aD+dGdG +d++l + +   g+++   + l +      L+ i+++ Gg++++
       KOO23624.1 320 SIAAADVDGDGDLDVLL-GNNDIIGNIDSPSRVLLNAdggTFLTSIELPGGGAYTL 374
                      35789*********555.44444577776666554432225788888888888776 PP

  == domain 7  score: 1.9 bits;  conditional E-value: 0.062
  TcdB_toxin_midN  31 lslaDldGdGladlvl 46 
                      + +aD+dGdG +d++l
       KOO23624.1 376 IAAADVDGDGDLDVLL 391
                      5789*********876 PP

  == domain 8  score: 6.9 bits;  conditional E-value: 0.0018
  TcdB_toxin_midN  15 petirvgtstsvedtnlslaDldGdGladlvltipsa 51 
                      p++i+    +s     + +aD+dGdG +d++l i++ 
       KOO23624.1 410 PTSIELPG-GSALTRSIAAADVDGDGDLDVLLGISYG 445
                      55555444.3333345789************999975 PP

  == domain 9  score: 6.4 bits;  conditional E-value: 0.0026
  TcdB_toxin_midN  28 dtnlslaDldGdGladlvltipsagtgavqkatsllgkpgLLkkidnelGgtteve 83 
                         +  aD+dGdG +d++l   +    +v    + +g    L+ i+++ G +++++
       KOO23624.1 484 TYSIAGADIDGDGDLDVLLGNNNKP-SQV--LIN-TGGGTFLTSIELPGGSAYTLS 535
                      4556679*********665554444.444..444.889999999999999999987 PP

  == domain 10  score: 6.2 bits;  conditional E-value: 0.003
  TcdB_toxin_midN  14 kpetirvgtstsvedtnlslaDldGdGladlvl 46 
                       p++i+    +s     + +aD+dGdG +dl+l
       KOO23624.1 569 FPTSIELPG-GSAYTNSIAAADVDGDGELDLLL 600
                      555555433.3333334799**********987 PP

  == domain 11  score: 4.1 bits;  conditional E-value: 0.013
  TcdB_toxin_midN  23 stsvedtn.lslaDldGdGladlvl 46 
                      ++  ++tn + +aD+dGdG +d++l
       KOO23624.1 625 PGGSAGTNsIAAADVDGDGDLDVLL 649
                      4444444426899*********876 PP

  == domain 12  score: 1.9 bits;  conditional E-value: 0.062
  TcdB_toxin_midN  11 dfkkpetirvgtstsvedtnlslaDldGdGladlvl 46 
                      d + p++i+    ++     + +aD+d dG +d++l
       KOO23624.1 664 DGTFPTSIELLSGGRALTRSIAVADMDADGNLDVLL 699
                      5567888888887888888899***********876 PP

>> T4BSS_DotH_IcmK  Putative outer membrane core complex of type IVb secretion
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.6   0.0     0.034        68      82     129 ..      37      85 ..      20      91 .. 0.87
   2 ?    0.7   0.0      0.13   2.6e+02      83     131 ..     195     244 ..     176     248 .. 0.83
   3 ?    3.0   0.0     0.025        50      81     129 ..     361     410 ..     340     416 .. 0.87
   4 !    5.9   0.0    0.0033       6.5      77     129 ..     517     570 ..     457     576 .. 0.86
   5 ?   -0.1   0.0      0.23   4.5e+02      82     129 ..     620     668 ..     602     674 .. 0.81

  Alignments for each domain:
  == domain 1  score: 2.6 bits;  conditional E-value: 0.034
  T4BSS_DotH_IcmK  82 feiekpsktsnvl.vealkeaargnlsvtLeglkvPvvltlvsgsgavd 129
                       +ie p  ++++  + a+   + g l v L + + P  l+l++g+g+  
       KOO23624.1  37 TSIELPGGGAVTQsIAAADVDGDGDLDVLLGNFNSPSQLLLNAGDGTFP 85 
                      56788888898889******************************99875 PP

  == domain 2  score: 0.7 bits;  conditional E-value: 0.13
  T4BSS_DotH_IcmK  83 eiekpsktsnvl.vealkeaargnlsvtLeglkvPvvltlvsgsgavdar 131
                      +ie p  ++ +  + a+   + g l v L +   P  l+l++g+g+    
       KOO23624.1 195 SIELPDGSASTFsIVAADVDGDGDLDVLLGNFFSPSQLLLNAGDGTFPMS 244
                      567777777777799999*************************9987655 PP

  == domain 3  score: 3.0 bits;  conditional E-value: 0.025
  T4BSS_DotH_IcmK  81 sfeiekpsktsnvl.vealkeaargnlsvtLeglkvPvvltlvsgsgavd 129
                        +ie p  ++ +l + a+   + g l v L + + P  ++l++g+g+  
       KOO23624.1 361 LTSIELPGGGAYTLsIAAADVDGDGDLDVLLGNFNSPSRVLLNAGDGTFP 410
                      678999999************************************99865 PP

  == domain 4  score: 5.9 bits;  conditional E-value: 0.0033
  T4BSS_DotH_IcmK  77 snsksfeiekpsktsnvl.vealkeaargnlsvtLeglkvPvvltlvsgsgavd 129
                      ++    +ie p  ++ +l + a+   + g l v L +l+ P  ++l++g+g+  
       KOO23624.1 517 GGTFLTSIELPGGSAYTLsIAAADVDDDGDLDVLLGNLNSPSRVLLNAGDGTFP 570
                      4444778999999999999***************************99999765 PP

  == domain 5  score: -0.1 bits;  conditional E-value: 0.23
  T4BSS_DotH_IcmK  82 feiekpsktsnvl.vealkeaargnlsvtLeglkvPvvltlvsgsgavd 129
                       +ie p  ++ +  + a+   + g l v L + + P  ++l++g+g+  
       KOO23624.1 620 TSIELPGGSAGTNsIAAADVDGDGDLDVLLGNFNSPSRVLLNAGDGTFP 668
                      567777777777779999999**********************999865 PP

>> BBS1  Ciliary BBSome complex subunit 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.5   0.0     0.041        81      14      39 ..      46      71 ..      40      83 .. 0.88
   2 ?    1.0   0.0      0.12   2.4e+02      14      39 ..      95     120 ..      85     125 .. 0.86
   3 ?    3.6   0.0     0.019        38      13      38 ..     153     178 ..     145     212 .. 0.84
   4 ?   -1.9   0.0      0.88   1.8e+03      17      37 ..     206     226 ..     193     231 .. 0.83
   5 ?   -0.5   0.0      0.34   6.8e+02      13      36 ..     251     274 ..     244     280 .. 0.87
   6 ?   -0.4   0.1      0.31   6.2e+02      14      36 ..     316     338 ..     314     344 .. 0.87
   7 ?   -0.1   0.0      0.26   5.1e+02      16      38 ..     373     395 ..     367     404 .. 0.85
   8 ?   -1.1   0.0      0.52     1e+03      13      34 ..     419     440 ..     411     446 .. 0.86
   9 ?   -3.7   0.0       3.2   6.4e+03      18      37 ..     486     505 ..     482     510 .. 0.80
  10 ?   -1.8   0.0      0.82   1.6e+03      14      38 ..     531     555 ..     525     561 .. 0.85
  11 ?    2.5   0.0      0.04        80      13      38 ..     579     604 ..     570     613 .. 0.86
  12 ?    1.7   0.0     0.075   1.5e+02      14      38 ..     629     653 ..     620     689 .. 0.87
  13 ?   -3.4   0.0       2.7   5.4e+03      13      35 ..     678     700 ..     669     704 .. 0.83

  Alignments for each domain:
  == domain 1  score: 2.5 bits;  conditional E-value: 0.041
        BBS1 14 tlsscialaDlkgdgdvkLvvadlgt 39
                +++++ia aD+ gdgd  ++++++++
  KOO23624.1 46 AVTQSIAAADVDGDGDLDVLLGNFNS 71
                68899****************99984 PP

  == domain 2  score: 1.0 bits;  conditional E-value: 0.12
        BBS1  14 tlsscialaDlkgdgdvkLvvadlgt 39 
                 +++ +ia aD+ gdgd  ++++++g+
  KOO23624.1  95 AYTLSIAAADVDGDGDLDVLLGNFGD 120
                 66678999*************99985 PP

  == domain 3  score: 3.6 bits;  conditional E-value: 0.019
        BBS1  13 ktlsscialaDlkgdgdvkLvvadlg 38 
                 ++++++ia aD+ gdgd  L++++ g
  KOO23624.1 153 SAYTNSIAAADVDGDGDLDLLLGNDG 178
                 58899****************99766 PP

  == domain 4  score: -1.9 bits;  conditional E-value: 0.88
        BBS1  17 scialaDlkgdgdvkLvvadl 37 
                  +i  aD+ gdgd  ++++++
  KOO23624.1 206 FSIVAADVDGDGDLDVLLGNF 226
                 56899********99998876 PP

  == domain 5  score: -0.5 bits;  conditional E-value: 0.34
        BBS1  13 ktlsscialaDlkgdgdvkLvvad 36 
                 ++++++ia aD+ gdgd  +++++
  KOO23624.1 251 SAFTTSIAAADMDGDGDLDVLLGN 274
                 6899*************9988876 PP

  == domain 6  score: -0.4 bits;  conditional E-value: 0.31
        BBS1  14 tlsscialaDlkgdgdvkLvvad 36 
                 +++++ia aD+ gdgd  +++++
  KOO23624.1 316 AFTRSIAAADVDGDGDLDVLLGN 338
                 68899***********9998876 PP

  == domain 7  score: -0.1 bits;  conditional E-value: 0.26
        BBS1  16 sscialaDlkgdgdvkLvvadlg 38 
                 + +ia aD+ gdgd  +++++++
  KOO23624.1 373 TLSIAAADVDGDGDLDVLLGNFN 395
                 557999************99997 PP

  == domain 8  score: -1.1 bits;  conditional E-value: 0.52
        BBS1  13 ktlsscialaDlkgdgdvkLvv 34 
                 ++l+++ia aD+ gdgd  +++
  KOO23624.1 419 SALTRSIAAADVDGDGDLDVLL 440
                 578899***********98776 PP

  == domain 9  score: -3.7 bits;  conditional E-value: 3.2
        BBS1  18 cialaDlkgdgdvkLvvadl 37 
                 +ia aD+ gdgd  +++++ 
  KOO23624.1 486 SIAGADIDGDGDLDVLLGNN 505
                 67789*******99988765 PP

  == domain 10  score: -1.8 bits;  conditional E-value: 0.82
        BBS1  14 tlsscialaDlkgdgdvkLvvadlg 38 
                 +++ +ia aD+  dgd  +++++l+
  KOO23624.1 531 AYTLSIAAADVDDDGDLDVLLGNLN 555
                 56678999*********99999887 PP

  == domain 11  score: 2.5 bits;  conditional E-value: 0.04
        BBS1  13 ktlsscialaDlkgdgdvkLvvadlg 38 
                 ++++++ia aD+ gdg+  L++++ g
  KOO23624.1 579 SAYTNSIAAADVDGDGELDLLLGNDG 604
                 68899***************998755 PP

  == domain 12  score: 1.7 bits;  conditional E-value: 0.075
        BBS1  14 tlsscialaDlkgdgdvkLvvadlg 38 
                 + +++ia aD+ gdgd  +++++++
  KOO23624.1 629 AGTNSIAAADVDGDGDLDVLLGNFN 653
                 567899***************9998 PP

  == domain 13  score: -3.4 bits;  conditional E-value: 2.7
        BBS1  13 ktlsscialaDlkgdgdvkLvva 35 
                 ++l+++ia+aD+  dg+  ++++
  KOO23624.1 678 RALTRSIAVADMDADGNLDVLLG 700
                 5788999*********9988776 PP

>> Arrestin_N  Arrestin (or S-antigen), N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.0      0.69   1.4e+03      83     103 ..      73      93 ..      68     105 .. 0.82
   2 ?   -1.8   0.0       1.5   2.9e+03      87     103 ..     136     152 ..     127     158 .. 0.83
   3 ?    5.1   0.0     0.011        23      83     109 ..     181     207 ..     171     216 .. 0.81
   4 ?   -0.2   0.0      0.48   9.6e+02      84     104 ..     231     251 ..     227     261 .. 0.80
   5 ?   -2.9   0.0       3.2   6.5e+03      87     105 ..     298     316 ..     291     318 .. 0.83
   6 ?   -1.7   0.0       1.4   2.8e+03      86     102 ..     401     417 ..     394     423 .. 0.82
   7 ?   -0.6   0.0      0.63   1.2e+03      87     107 ..     452     472 ..     444     486 .. 0.81
   8 ?   -1.6   0.0       1.3   2.5e+03      86     103 ..     561     578 ..     553     584 .. 0.82
   9 ?   -2.5   0.0       2.4   4.9e+03      84     103 ..     608     627 ..     600     631 .. 0.80

  Alignments for each domain:
  == domain 1  score: -0.7 bits;  conditional E-value: 0.69
                 HHHHHHH-TTEEEEEE---TT CS
  Arrestin_N  83 sqekLpkGehafpFsfelPkn 103
                 sq  L++G+ +fp s+elP  
  KOO23624.1  73 SQLLLNAGDGTFPTSIELPGG 93 
                 5666899************76 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 1.5
                 HHH-TTEEEEEE---TT CS
  Arrestin_N  87 LpkGehafpFsfelPkn 103
                 L++G+ +fp s+elP  
  KOO23624.1 136 LNAGDGTFPTSIELPGG 152
                 788************65 PP

  == domain 3  score: 5.1 bits;  conditional E-value: 0.011
                 HHHHHHH-TTEEEEEE---TTS--SEC CS
  Arrestin_N  83 sqekLpkGehafpFsfelPknlpsSfe 109
                 sq  L++G+ +fp s+elP+ ++s+f 
  KOO23624.1 181 SQLLLNAGDGTFPTSIELPDGSASTFS 207
                 4555888*****************995 PP

  == domain 4  score: -0.2 bits;  conditional E-value: 0.48
                 HHHHHH-TTEEEEEE---TTS CS
  Arrestin_N  84 qekLpkGehafpFsfelPknl 104
                 q  L++G+ +fp s++lP  +
  KOO23624.1 231 QLLLNAGDGTFPMSIDLPGGS 251
                 555889************764 PP

  == domain 5  score: -2.9 bits;  conditional E-value: 3.2
                 HHH-TTEEEEEE---TTS- CS
  Arrestin_N  87 LpkGehafpFsfelPknlp 105
                 L++G+ +fp s+ lP +++
  KOO23624.1 298 LNAGDGTFPTSVGLPVDCA 316
                 889************9885 PP

  == domain 6  score: -1.7 bits;  conditional E-value: 1.4
                 HHHH-TTEEEEEE---T CS
  Arrestin_N  86 kLpkGehafpFsfelPk 102
                  L++G+ +fp s+elP 
  KOO23624.1 401 LLNAGDGTFPTSIELPG 417
                 4889************6 PP

  == domain 7  score: -0.6 bits;  conditional E-value: 0.63
                 HHH-TTEEEEEE---TTS--S CS
  Arrestin_N  87 LpkGehafpFsfelPknlpsS 107
                 L++G+ +fp s+elP  + s+
  KOO23624.1 452 LNAGDGTFPTSIELPGGSTST 472
                 889************887665 PP

  == domain 8  score: -1.6 bits;  conditional E-value: 1.3
                 HHHH-TTEEEEEE---TT CS
  Arrestin_N  86 kLpkGehafpFsfelPkn 103
                  L++G+ +fp s+elP  
  KOO23624.1 561 LLNAGDGTFPTSIELPGG 578
                 4889************65 PP

  == domain 9  score: -2.5 bits;  conditional E-value: 2.4
                 HHHHHH-TTEEEEEE---TT CS
  Arrestin_N  84 qekLpkGehafpFsfelPkn 103
                 q  L++G  +fp s+elP  
  KOO23624.1 608 QLLLNAGGGTFPTSIELPGG 627
                 555888***********965 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (791 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       254  (0.014167); expected 358.6 (0.02)
Passed bias filter:                      187  (0.01043); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                        16  (0.000892409); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.62u 0.26s 00:00:00.88 Elapsed: 00:00:00.44
# Mc/sec: 5354.70
//
Query:       KOO23625.1  [L=400]
Description: gtp-binding protein cg1354-like protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.1e-38  129.8   0.3    6.9e-38  128.7   0.3    1.6  1  YchF-GTPase_C  Protein of unknown function (DUF933)
    1.6e-18   66.9   0.0    5.9e-18   65.0   0.0    2.0  2  MMR_HSR1       50S ribosome-binding GTPase
    7.3e-06   25.6   0.0    1.7e-05   24.4   0.0    1.6  1  FeoB_N         Ferrous iron transport protein B


Domain annotation for each model (and alignments):
>> YchF-GTPase_C  Protein of unknown function (DUF933)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  128.7   0.3   1.2e-41   6.9e-38       1      84 []     308     392 ..     308     392 .. 0.97

  Alignments for each domain:
  == domain 1  score: 128.7 bits;  conditional E-value: 1.2e-41
  YchF-GTPase_C   1 LitffTaGekevraWtikkgttapqaAgviHsDfekgFiraevikyedlvelgs.eaaakeagklrlegkdyvvqdgDiilfkfN 84 
                    Li +fT G++evraWti++g+ ap+aAgviHsDfe+gFi+aev++++d +e g  eaa+keagk+r+egk+yvvqd Dii+fkfN
     KOO23625.1 308 LIFYFTSGPDEVRAWTIRNGWMAPKAAGVIHSDFERGFIKAEVYNFKDWKENGCsEAAVKEAGKYRQEGKNYVVQDKDIIFFKFN 392
                    799*************************************************555*****************************9 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.0   0.0   9.8e-22   5.9e-18       2      87 ..      24     133 ..      23     181 .. 0.84
   2 ?   -1.3   0.0      0.37   2.2e+03      74      90 ..     223     239 ..     152     269 .. 0.65

  Alignments for each domain:
  == domain 1  score: 65.0 bits;  conditional E-value: 9.8e-22
                 EEEEESTTSSHHHHHHHHHTSTEEESSSTTSSSSEEEEEEEETTEE.................EEEEECGGCSSHHHHHHHHHHHHHHHHC.TSEEEEE CS
    MMR_HSR1   2 vaivGrpNvGKStLinaltgekaivsdkpgtTrdinegrvklkgke.................ielvDtpGliegaseekglgkaflalee.adlillv 82 
                 ++ vG+pNvGKSt +n +++  + ++++p++T+d++e+rv++ + +                 ++  D++Gl++ga e+ glg+afl++++ +d+i++v
  KOO23625.1  24 AGMVGMPNVGKSTTFNLMCKMSVPAENFPFCTIDPTEARVAVPDADfdelveklqpkaavpafLTCFDIAGLVKGAAEGAGLGNAFLSHISqVDAIFHV 122
                 689*************************************95554467778888889999999*************************99979****** PP

                 EETT......T CS
    MMR_HSR1  83 vdas......e 87 
                 v+        e
  KOO23625.1 123 VRTFettadgE 133
                 *9664444430 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 0.37
                 HCTSEEEEEEETTTTCS CS
    MMR_HSR1  74 eeadlillvvdaseekl 90 
                   ++ +l+++++s+e++
  KOO23625.1 223 LTSKPALHLINLSQEDF 239
                 33566677777774433 PP

>> FeoB_N  Ferrous iron transport protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.4   0.0   2.8e-09   1.7e-05       4      46 ..      25      67 ..      22      74 .. 0.89

  Alignments for each domain:
  == domain 1  score: 24.4 bits;  conditional E-value: 2.8e-09
                EEEESTTSSHHHHHHHHHTTSEEEEESTTSSSEEEEEEEEETT CS
      FeoB_N  4 alvGnpnvGkttlfnaltgakqkvgNwpGvtvekkegklklkg 46
                 +vG pnvGk+t fn +++++    N+p  t++ +e+++ + +
  KOO23625.1 25 GMVGMPNVGKSTTFNLMCKMSVPAENFPFCTIDPTEARVAVPD 67
                68*********************************99988665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (400 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       734  (0.0409393); expected 358.6 (0.02)
Passed bias filter:                      477  (0.0266049); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.51u 0.29s 00:00:00.80 Elapsed: 00:00:00.44
# Mc/sec: 2700.79
//
Query:       KOO23626.1  [L=109]
Description: hypothetical protein Ctob_007738 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
  ------ inclusion threshold ------
       0.13   12.0   0.0       0.18   11.6   0.0    1.2  1  LexA_DNA_bind  LexA DNA binding domain


Domain annotation for each model (and alignments):
>> LexA_DNA_bind  LexA DNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0     1e-05      0.18       4      51 ..       4      52 ..       1      54 [. 0.87

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 1e-05
                   --HHHHHHHHHHHHHHHHHSS---HHHH.HHHHTS-.HHHHHHHHHHHH CS
  LexA_DNA_bind  4 LTerQrevldlikasieetgypPsirei.aralglkSpsaveehLkaLe 51
                    T++  e+l+li + +++t+  P   e+ a++l l+ ++a e+ L+  e
     KOO23626.1  4 TTAAGVELLELICQMVSRTQNKPACVEVfAHRLLLTDARAFESELRLVE 52
                   5788889****************999975899**********9998655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (109 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       258  (0.0143901); expected 358.6 (0.02)
Passed bias filter:                      236  (0.013163); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.25s 00:00:00.61 Elapsed: 00:00:00.40
# Mc/sec: 808.13
//
Query:       KOO23627.1  [L=1018]
Description: amidohydrolase 2 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
   4.6e-136  454.0   0.2   1.4e-135  452.4   0.7    1.5  2  Aldedh         Aldehyde dehydrogenase family
    3.3e-38  132.1   5.8    3.3e-38  132.1   5.8    2.3  3  Amidohydro_2   Amidohydrolase
    1.4e-22   80.0   0.0      6e-22   77.9   0.0    2.2  2  Ribonuc_L-PSP  Endoribonuclease L-PSP


Domain annotation for each model (and alignments):
>> Aldedh  Aldehyde dehydrogenase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.0      0.31   1.9e+03     276     320 ..     179     223 ..     175     229 .. 0.84
   2 !  452.4   0.7  2.3e-139  1.4e-135       7     423 ..     410     848 ..     405     865 .. 0.93

  Alignments for each domain:
  == domain 1  score: -3.0 bits;  conditional E-value: 0.31
                 EEEHHHHHHHHHHHHHHHHT--BS-TTSTT-SB---SSHHHHHHH CS
      Aldedh 276 lvqesiydefveklveaakklkvgdpldedtdvGPliseaqlekv 320
                 lv+   +d++  +l++ +  ++vg p++ +  + ++i   +++++
  KOO23627.1 179 LVHPWDMDDLDGRLTKYMMGWTVGMPMETHLSITAMILGGAFDRL 223
                 56666678888899*********************9987777765 PP

  == domain 2  score: 452.4 bits;  conditional E-value: 2.3e-139
                 SEEEEEETTTCEEEEEEE-B-HHHHHHHHHHHHHHHH..HHTTS-HHHHHHHHHHHHHHHHHTHHHHHHHHHHHH---HHHHHH.HHHHHHHHHHHHHH CS
      Aldedh   7 etievinPatgeviakvpaataedvdaavaaAkeafk..awaklpaeeRaeiLrkaadlleerkeelaeletletGkplaeara.eveeaidvlryyae 102
                 ++++ i+ atg+v ++v+a++a+dvdaav+aA +a +  +wa+++++ Ra++L++aadll ++ e +a++e++++Gkp+a ara +v++a+  lr++a+
  KOO23627.1 410 GSLPLIDAATGRVRGSVAASSAADVDAAVDAAGRALSrgEWAATSMAARAAVLQRAADLLDAESEAFAQAEAADVGKPVALARAlDVPRAAANLRMFAG 508
                 56789999****************************9889*********************************************************** PP

                 HHHHHSEEEEEE.C........TTEEEEEEEEE-SEEEEEE-SSSCCHHHHHHHHHHHHTT-EEEEEE-TTSHHHHHHHHHHHHHTTS-TTSEEE--SS CS
      Aldedh 103 laeklegevlps.s........egklalvrrePlGvvgaItPWNfPlllaawklapalaaGNtvvlKPaeetplsalllaelfeeaglPkgvlnvvtgs 192
                 l+ + e +++            +++l++++r+P+Gvvg+ItPWN Pl l++wklapala+GN+vv KP+e tp +a +la+++e+aglP+gv+nvv+g+
  KOO23627.1 509 LVCHGELSSVRHgGggdrsgglDDALNYTVRKPVGVVGLITPWNLPLYLLTWKLAPALAMGNAVVAKPSELTPTTASMLARVLERAGLPPGVFNVVHGT 607
                 *9886664433322456778889**************************************************************************** PP

                 TCCHHHHHHH-TTESEEEEES-HHHHHHHHHHHHCTTSEEEEEE---EEEEE-TTSHHHHHHHHHHHHHHGGGGTSTTSEEEEEEEHH...HHHHHHHH CS
      Aldedh 193 gsevgealvehpevdkvsftGstevgrkiakaaaknlkrvtlElGGknplivledaDldkaveaivkgafgnaGQvCiaasrllvqes...iydefvek 288
                 g+ vg+al++hp+v ++sftG+t++g  +a+a a ++ +++lElGGknpl+v++d+Dl+ av+++v+++f+n+GQ+C +asr+lv++     y++f ++
  KOO23627.1 608 GAAVGAALCAHPRVGAISFTGGTATGSLVAAAVAPRFAKLSLELGGKNPLLVFADCDLELAVQGAVRASFLNSGQICLCASRILVEDTadgFYERFAAA 706
                 **********************************9**************************************************9764448******* PP

                 HHHHHHT--BS-TTSTT-SB---SSHHHHHHHHHHHHHHH.HTTSEEEE-TT......E.SB-SSSTTEE--EEEES-TTTSHHHHS---SSEEEEEEE CS
      Aldedh 289 lveaakklkvgdpldedtdvGPliseaqlekvekyveeak.eegaklllGge......reeaglekgyfvePtvlanvtpdmriaqeEiFGPVlsvikf 380
                 +++aa++lk+g p d++ d+GPl+s+aq++kv+++   a+  +g++ l Gg        ++   + g++++Ptvl++++ d+++ q+E FGP++++ +f
  KOO23627.1 707 FANAASALKLGAPTDPSADIGPLVSAAQRDKVTALYCAAVgTDGVRTLAGGLedpravAAHGAHQGGHWFAPTVLDGLPMDAPLPQTEAFGPLVTIHPF 805
                 *********************************9877776268999***998788776556677788******************************** PP

                 SSHHHHHHHHHSSSEESEEEEE-SBHHHHHHHHHHS-SSEEEE CS
      Aldedh 381 kdeeeaieiaNdteyGLaagvftkdleraervaerleaGnvyi 423
                  +e ea+e+aN+t+yGLaa+v+t+dl+ra+++a+rleaG+v+ 
  KOO23627.1 806 TSEVEAVELANATQYGLAASVWTEDLSRAHTIASRLEAGTVWG 848
                 *****************************************95 PP

>> Amidohydro_2  Amidohydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  132.1   5.8   5.5e-42   3.3e-38       3     260 ..       1     309 [.       1     316 [. 0.92
   2 ?   -2.9   2.1      0.74   4.4e+03      49     106 ..     427     484 ..     411     503 .. 0.77
   3 ?   -3.1   0.2      0.89   5.3e+03      26      89 ..     906     969 ..     901     978 .. 0.73

  Alignments for each domain:
  == domain 1  score: 132.1 bits;  conditional E-value: 5.5e-42
                   EEEEE..SHHH.......................................CCCCCCGGCTSCCCHHHHHCHHTSSECCCEHCHHHHHHHHTSHHCHH CS
  Amidohydro_2   3 vHaHllppeaa.......................................irddgepngfdpeerlafmkragvdpqlaspeallvlnaaagiarav 60 
                   +H H+lp+ ++                                        ++ + + ++d++er+a+m++a+vd ql+s+++ l+ +    ++ ++
    KOO23627.1   1 MHSHFLPARWPdfaarhggeawpwmrhsgqpagtfgygrqcnamlmqgerEFRPVTRACWDAAERVADMDKACVDLQLISATPILFQW----QRPPK 93 
                   699999999999999999999999999999999999999999999999999*************************************....55666 PP

                   HHHHHHHHHHHHHHHHHHHHC..TTCBECEEECTSSHCHHHHHHHHHHHHTTECEEEEESSTTTCCTTTCGGHHHHHHHHHHHT-EEEEE....... CS
  Amidohydro_2  61 ivaalcrgannrvlaeaakrp..drfvggaavvpldpedaaaeleraveelgfkGvrlnphvggddllgdrldrpifealeelglpvdihtGps... 152
                   +   ++r  n+ +l+++a r+  +r++++ +v++++++da  e era+  +g +Gv+++ hvg  dl+ d+l   ++  ++  ++pv +h  p+   
    KOO23627.1  94 VALDVARHFNDAALEMCASRDaqGRLLPLCQVPLQSVDDACLEVERAM-AAGHVGVQIGNHVGTRDLDADELV-AFLSHCASIRAPVLVH--PWdmd 186
                   66666666699999999987655*************************.************************.****************..***** PP

                   ..........CHHHCHHHHHHHHHHHHHHHCCHHHHCTT.SEEEESGGGTTTTCHHHHHHHHHHHHHCCEEECCGHHH..........SSEEECCHH CS
  Amidohydro_2 153 ..........pewlfggpqettraiqplllsgvarkfPn.lkivlaHgGgpserlraalellarrpnvyvklsglyte..........llyfdspla 228
                             + w++g+p+et   i  ++l+g+++++P+ l++++aHgGg+   ++ +l +l++++ ++    g              +++ ds+++
    KOO23627.1 187 dldgrltkymMGWTVGMPMETHLSITAMILGGAFDRLPReLDLCFAHGGGA---FAFLLGRLENAWHHRENAKG---KaihppshyldRFSVDSAVF 277
                   ***************************************************...88888888888866644444...157788999999******** PP

                   CHHHHHHHHHHH-GGGEEEE--BTSTTSTSCT CS
  Amidohydro_2 229 dppalarlieavgpdrilfGsDyPhptleaep 260
                   d+ al++li+++g+ r++ GsDyP+p +e+ +
    KOO23627.1 278 DARALRLLIDTFGAHRVMLGSDYPFPLGEQLV 309
                   **************************998765 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 0.74
                   HHHHHTSHHCHHHHHHHHHHHHHHHHHHHHHHCTTCBECEEECTSSHCHHHHHHHHHH CS
  Amidohydro_2  49 vlnaaagiaravivaalcrgannrvlaeaakrpdrfvggaavvpldpedaaaelerav 106
                   ++ +aa+++ av+ a+ +    ++++  +a+r++ + + a++ + + e+ a+++   v
    KOO23627.1 427 AASSAADVDAAVDAAGRALSRGEWAATSMAARAAVLQRAADLLDAESEAFAQAEAADV 484
                   4556777888888888888888888888888888888888888877777777666665 PP

  == domain 3  score: -3.1 bits;  conditional E-value: 0.89
                   CCHHHHHCHHTSSECCCEHCHHHHHHHHTSHHCHHHHHHHHHHHHHHHHHHHHHHCTTCBECEE CS
  Amidohydro_2  26 eerlafmkragvdpqlaspeallvlnaaagiaravivaalcrgannrvlaeaakrpdrfvggaa 89 
                   ++ l++++++  ++q+++ + +  + +  g + +v+v+a+   +  +++a  a++++ f+ ++ 
    KOO23627.1 906 DGTLNDYDARAQTRQCIQNVRTVLEAHGLGLDAVVDVHAFLVDMKRDFAAFNAEYAAAFGKLPE 969
                   5667788888888888888888888888888888888888888888888777777777766654 PP

>> Ribonuc_L-PSP  Endoribonuclease L-PSP
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   0.0       1.6   9.6e+03      24      56 ..     680     714 ..     674     715 .. 0.63
   2 !   77.9   0.0     1e-25     6e-22       3     119 ..     864     995 ..     862     997 .. 0.94

  Alignments for each domain:
  == domain 1  score: -3.4 bits;  conditional E-value: 1.6
                    EEE-SB-TTTSCB....-SSHHHHHHHHHHHHHHHH CS
  Ribonuc_L-PSP  24 sGqlpldpetgelv...egdveeqtrqalenlkavL 56 
                    sGq+ l + +  lv    + ++e  ++a++n+  +L
     KOO23627.1 680 SGQICLCA-SRILVedtADGFYERFAAAFANAASAL 714
                    88888885.444441222346677778888877766 PP

  == domain 2  score: 77.9 bits;  conditional E-value: 1e-25
                    TSTTTSSS-BSEEEETTEEEEEEE-SB-T............TTSCB.-SSHHHHHHHHHHHHHHHHHHTT--GGGEEEEEEEESSGGG.HHHHHHH CS
  Ribonuc_L-PSP   3 aapaaaapYsqavkagnlvyvsGqlpldp............etgelvegdveeqtrqalenlkavLaaagaslsdvVkvtvFladied.faevnev 85 
                    +ap+++++Y +a +ag+l++++G  p dp            ++g+l + d+++qtrq+++n++ vL+a g+ l+ vV+v  Fl+d+++ fa++n+ 
     KOO23627.1 864 SAPKPMGAYAHAREAGGLLFLAGIGPRDPatdsvpggpveaADGTLNDYDARAQTRQCIQNVRTVLEAHGLGLDAVVDVHAFLVDMKRdFAAFNAE 959
                    79**************************************99********************************************988******* PP

                    HHHHSSSSTS--EEEEEE-SBSG..GG-SEEEEEEE CS
  Ribonuc_L-PSP  86 yaeafdelkeaParsaveVaaLp..kgakvEIeaia 119
                    ya af +l e+P+r++veV +L    +++vE +++a
     KOO23627.1 960 YAAAFGKLPEPPVRTTVEVGQLLpgGRIAVELKVVA 995
                    *******999**********9983455777887777 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1018 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       449  (0.0250432); expected 358.6 (0.02)
Passed bias filter:                      304  (0.0169558); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.68u 0.26s 00:00:00.94 Elapsed: 00:00:00.42
# Mc/sec: 7277.87
//
Query:       KOO23628.1  [L=75]
Description: hypothetical protein Ctob_009501, partial [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (75 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       246  (0.0137208); expected 358.6 (0.02)
Passed bias filter:                      173  (0.00964917); expected 358.6 (0.02)
Passed Vit filter:                         9  (0.00050198); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.21s 00:00:00.54 Elapsed: 00:00:00.37
# Mc/sec: 615.11
//
Query:       KOO23629.1  [L=671]
Description: oligomycin resistance ATP-dependent permease [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.1e-20   73.5   2.3    2.8e-20   73.1   2.3    1.2  1  ABC_membrane  ABC transporter transmembrane region
      7e-19   68.7   0.0    1.6e-18   67.5   0.0    1.7  1  ABC_tran      ABC transporter
     0.0042   17.5   0.0      0.012   16.0   0.0    1.8  1  AAA_16        AAA ATPase domain
     0.0048   17.4   0.0     0.0099   16.4   0.0    1.5  1  AAA_23        AAA domain
  ------ inclusion threshold ------
      0.016   15.1   0.0      0.045   13.6   0.0    1.7  1  RsgA_GTPase   RsgA GTPase
      0.025   14.3   0.0       0.07   12.9   0.0    1.7  1  AAA_29        P-loop containing region of AAA domain
      0.049   13.6   0.1       0.14   12.1   0.1    1.6  2  Rad17         Rad17 P-loop domain
       0.05   13.2   0.2       0.15   11.6   0.2    1.8  1  AAA_25        AAA domain
      0.053   13.0   0.1       0.42   10.0   0.0    2.0  2  SMC_N         RecF/RecN/SMC N terminal domain
      0.054   12.3   0.0      0.083   11.7   0.0    1.2  1  Adeno_IVa2    Adenovirus IVa2 protein
        0.1   12.9   0.0       0.22   11.8   0.0    1.5  1  AAA_22        AAA domain
       0.14   12.2   0.0        0.3   11.1   0.0    1.5  1  Tsi6          Tsi6


Domain annotation for each model (and alignments):
>> ABC_membrane  ABC transporter transmembrane region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   73.1   2.3   1.9e-23   2.8e-20       2     272 ..      95     361 ..      94     363 .. 0.91

  Alignments for each domain:
  == domain 1  score: 73.1 bits;  conditional E-value: 1.9e-23
                   HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH.HHHHHHHHHHHHHHHHHHCSTHHHHHHSCH CS
  ABC_membrane   2 iliillailagvlsplfplvlgrildtlldkgdpetealnvysllllllglaqfilallqsyllnv.tgerlskrlrrklfkkilrqpmsffdtnsv 97 
                   +l++++ ++ + ++p+ +l l  ++++ ++ g      +++++ ++++lg + + ++ +q     + tg +l+    r + +k lr + +  +++s 
    KOO23629.1  95 FLWCFAVVFLEYAAPFGMLGLIGYIQSNTG-GAVPP--SAIVFGACVALGPLALNTCHGQANASGWrTGTKLRAYFTRAVCEKALRFDSA-ASSQSI 187
                   6789999**********************9.66666..69999999999999999999999999888********************965.5678** PP

                   HHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHH CS
  ABC_membrane  98 GellsrltndvsklrdglgeklglffqslltfvgglivmfylgwkltlvllailpliilvsaviakilkklkkkeqkavakassvaeEslsgirtVk 194
                   G ++++l+ d++++ d+ g+   l++  +++ + +l+ +fyl  + ++ +l++++  ++++av+++ +k l+++ + + +k+ ++++E++ +ir +k
    KOO23629.1 188 GLMTNLLAVDTQNIVDFAGWAAWLWLEGMQLAM-TLAALFYLLGYAAFGGLGVCLFAFPLNAVVMRQVKILQDRLMGEKDKRMALITEAIGAIRAIK 283
                   *****************************9999.778888888889*************************************************** PP

                   HTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSTHHHHHHHHHHHHHHHH CS
  ABC_membrane 195 afgreeyflekfekaleeakkagikkaianglligitqllgllsyalalwfGttlvisgelsvgdlvvflslfailfg 272
                   + ++e++f++++ k + ++    + ++++n++++++    ++++ ++ +++ + l+    ++  + ++ l+lf +l+ 
    KOO23629.1 284 LHAWEDEFERRIAKLRHDEVATLLAYQKLNAITSTMWLTTPTTAALASFLIKSRLIPPYRITAAEGFTALTLFQLLSV 361
                   ********************************9988888888888888888888888888888888888888888776 PP

>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.5   0.0   1.1e-21   1.6e-18       1     134 [.     503     635 ..     503     638 .. 0.86

  Alignments for each domain:
  == domain 1  score: 67.5 bits;  conditional E-value: 1.1e-21
                 EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGGB-HHHCCHCEEEE-SS--S-TTSBHHHH......HHHTCHHHHHHHST CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx......xxxxxxxxxxxxxx RF
    ABC_tran   1 lknvslklkegekvaivGenGaGKStLlkllagllkpteGeilldgkdlkeqeleslrkeigvlpqepqlfpeltvren......esdeeiekalsklg 93 
                 l+nvsl +++ge+  i G++G+GKS+Ll++++g +    G +               r +i+++pq + l + + +ren       ++++ e++l+   
  KOO23629.1 503 LSNVSLAVRPGELAIICGPTGCGKSSLLAAMLGDMPR-LGGL------------AAIRGKISYCPQRSWLANAS-LRENilfgskFESSRYEAVLDACA 587
                 78********************************865.5554............599**********9999998.9******99855556666666666 PP

                 TGG.......TTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEES CS
                 xxx.......xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  94 lke.......lkdtvvksspssLSgGqkqrvalarallkkpkllllDE 134
                 l          ++t +++++ +LSgGq+qrv lara   + +++llD+
  KOO23629.1 588 LRAdiallpnGDATEIGERGINLSGGQQQRVNLARACYADTDVVLLDD 635
                 66666666666788899999***************************8 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.0   8.2e-06     0.012      24      67 ..     512     562 ..     503     651 .. 0.72

  Alignments for each domain:
  == domain 1  score: 16.0 bits;  conditional E-value: 8.2e-06
      AAA_16  24 p.elvllsGesGvGKsslvrellralekdggif.lrgkcdql.esa....i 67 
                 p el ++ G+ G+GKssl+ + l  + + gg++ +rgk   + +++    +
  KOO23629.1 512 PgELAIICGPTGCGKSSLLAAMLGDMPRLGGLAaIRGKISYCpQRSwlanA 562
                 448999*****************9999998777799999999333333331 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   0.0   6.6e-06    0.0099      21      39 ..     515     533 ..     504     535 .. 0.90

  Alignments for each domain:
  == domain 1  score: 16.4 bits;  conditional E-value: 6.6e-06
      AAA_23  21 ltlItGpNGaGKTTildAi 39 
                 l +I+Gp+G+GK+++l A+
  KOO23629.1 515 LAIICGPTGCGKSSLLAAM 533
                 789*************997 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.0     3e-05     0.045      93     122 ..     506     536 ..     485     549 .. 0.78

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 3e-05
                  HHHHCTT.SEEEEECSTTSSHHHHHHHHCTT CS
  RsgA_GTPase  93 lkellkd.ktsvlvGqSGvGKStLinallpe 122
                  ++ +++  ++++++G++G GKS+L+ a+l++
   KOO23629.1 506 VSLAVRPgELAIICGPTGCGKSSLLAAMLGD 536
                  55555555899**************999886 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   4.7e-05      0.07      13      42 ..     504     533 ..     501     535 .. 0.83

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 4.7e-05
      AAA_29  13 dghtieidlkgatlltGpsGsGKSTllDAi 42 
                 ++ ++ +++ +  ++ Gp+G GKS+ll A+
  KOO23629.1 504 SNVSLAVRPGELAIICGPTGCGKSSLLAAM 533
                 5566778878899**************887 PP

>> Rad17  Rad17 P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.1   9.1e-05      0.14      36      62 ..     504     530 ..     500     536 .. 0.83
   2 ?   -3.0   0.0       3.8   5.7e+03     129     163 ..     624     660 ..     610     665 .. 0.73

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 9.1e-05
       Rad17  36 kadvLesrkkriLLisGPsGCgkstvv 62 
                    +L  r+ ++ +i+GP+GCgks  +
  KOO23629.1 504 SNVSLAVRPGELAIICGPTGCGKSSLL 530
                 566788899999************876 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 3.8
       Rad17 129 lrtdkklilvedlPnkfyrds..dalrevirkylrss 163
                   +d  ++l++d+ +     +  + + + i+ +l+ +
  KOO23629.1 624 CYADTDVVLLDDVLSAVDAHVgaHIFDQCILGFLTGR 660
                 5578889999999876654443499999999988866 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.2    0.0001      0.15      30      55 ..     510     535 ..     493     548 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 0.0001
      AAA_25  30 lpagelallaGapgtGKttlaldlal 55 
                 ++ gela+++G++g+GK+ l+  +  
  KOO23629.1 510 VRPGELAIICGPTGCGKSSLLAAMLG 535
                 5679****************988765 PP

>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   0.0   0.00028      0.42      26      48 ..     515     534 ..     503     540 .. 0.85
   2 ?    0.2   0.0      0.29   4.3e+02     136     174 ..     609     643 ..     559     651 .. 0.72

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.00028
                 EEEEEESTTSSHHHHHHHHHHHC CS
                 xxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N  26 ftaivGpNGSGKsnlldAilFvL 48 
                 + +i Gp G+GKs+ll A+   L
  KOO23629.1 515 LAIICGPTGCGKSSLLAAM---L 534
                 67899*************9...4 PP

  == domain 2  score: 0.2 bits;  conditional E-value: 0.29
                 CS-HHHHHHHHHHHHHHHHCCS--SEEEECTTTTTS-HH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N 136 lLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDek 174
                 +LSgG+++ v la       +  + ++llD++ +a D++
  KOO23629.1 609 NLSGGQQQRVNLA----RACYADTDVVLLDDVLSAVDAH 643
                 8999999977654....5678888899999999999875 PP

>> Adeno_IVa2  Adenovirus IVa2 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   5.5e-05     0.083      89     108 ..     515     534 ..     494     537 .. 0.81

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 5.5e-05
  Adeno_IVa2  89 iGviyGPtGsGksqllrnli 108
                 + +i GPtG+Gks ll +++
  KOO23629.1 515 LAIICGPTGCGKSSLLAAML 534
                 689*************9987 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   0.00014      0.22       6      25 ..     514     533 ..     510     540 .. 0.85

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 0.00014
      AAA_22   6 gilvvtGesGtGKTtllrrl 25 
                  + +++G++G+GK+ ll+ +
  KOO23629.1 514 ELAIICGPTGCGKSSLLAAM 533
                 5789***********99876 PP

>> Tsi6  Tsi6
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0    0.0002       0.3      23      76 ..     244     297 ..     241     300 .. 0.92

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.0002
                 -HHHHHHHHHHHHHHHHHH-TTS-SCGGGG--HHHHHHHHHTTT-HHHHHHHHH CS
        Tsi6  23 fplYasieqqLeylkdvlegeekdkskLhkltlGalAskeFeetdpelaeaLsd 76 
                 fpl a++ +q++ l+d l ge++ +  L + ++Ga+ +  + + ++e+++++ +
  KOO23629.1 244 FPLNAVVMRQVKILQDRLMGEKDKRMALITEAIGAIRAIKLHAWEDEFERRIAK 297
                 67778999*****************************************99876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (671 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       809  (0.0451224); expected 358.6 (0.02)
Passed bias filter:                      558  (0.0311228); expected 358.6 (0.02)
Passed Vit filter:                        81  (0.00451782); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.63u 0.29s 00:00:00.92 Elapsed: 00:00:00.43
# Mc/sec: 4740.00
//
Query:       KOO23630.1  [L=688]
Description: ABC transporter c family member 2-like protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    6.1e-30  104.8   1.4    8.5e-30  104.3   1.4    1.2  1  ABC_membrane     ABC transporter transmembrane region
    6.6e-27   94.7   0.0    1.2e-26   93.9   0.0    1.4  1  ABC_tran         ABC transporter
      1e-07   31.7   0.0      1e-05   25.1   0.0    2.2  2  SMC_N            RecF/RecN/SMC N terminal domain
  ------ inclusion threshold ------
      0.015   15.3   0.1      0.036   14.2   0.1    1.6  1  MMR_HSR1         50S ribosome-binding GTPase
      0.018   15.4   0.1      0.043   14.2   0.1    1.7  1  AAA_16           AAA ATPase domain
      0.023   14.8   0.2      0.063   13.4   0.2    1.7  2  DUF87            Helicase HerA, central domain
       0.08   12.9   0.8        0.2   11.6   0.1    2.1  2  Chlorosome_CsmC  Chlorosome envelope protein C
        0.1   12.3   0.0       0.74    9.5   0.0    2.1  2  IstB_IS21        IstB-like ATP binding protein
       0.11   11.7   0.0       0.19   10.8   0.0    1.3  1  DUF815           Protein of unknown function (DUF815)
        2.3    8.8   6.1       0.32   11.5   1.4    2.0  2  ATP_synt_H       ATP synthase subunit H
        6.2    7.3   7.1        3.1    8.3   0.1    2.7  2  Peptidase_A24    Type IV leader peptidase family
          7    6.6   5.8          4    7.4   0.5    3.0  3  SLATT_1          SMODS and SLOG-associating 2TM effector doma


Domain annotation for each model (and alignments):
>> ABC_membrane  ABC transporter transmembrane region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  104.3   1.4   5.7e-33   8.5e-30      13     274 .]     120     385 ..     109     385 .. 0.92

  Alignments for each domain:
  == domain 1  score: 104.3 bits;  conditional E-value: 5.7e-33
                   HHHHHHHHHHHHHHHHHHSSTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSTHHHHHHSCHHHHHHHHHHHHH CS
  ABC_membrane  13 vlsplfplvlgrildtlldkgdpetealnvysllllllglaqfilallqsyllnvtgerlskrlrrklfkkilrqpmsffdtnsvGellsrltndvs 109
                    ++pl++l l++++d + ++g ++  +  + +  ++l++ + ++++++++ +l +++  +sk+l+  ++++++++ +s+++ ++ G++l+r++ d+s
    KOO23630.1 120 SMDPLQSLALKHWMDEMAGDGATKP-EALLACGSYTLAATGLIAVTMVRNIILPYASVAASKKLHGGMVRSVMHATVSWYEATPLGRILNRFSGDIS 215
                   689*****************99999.9999999**************************************************************** PP

                   HHHHHHCHHHHHHHHHHHHHHHHHHHHHH..HSHHHHHHHHHHHHHHHHHHHHHHHHHH....HHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTTHH CS
  ABC_membrane 110 klrdglgeklglffqslltfvgglivmfy..lgwkltlvllailpliilvsaviakilk....klkkkeqkavakassvaeEslsgirtVkafgree 200
                   k+++++++++ +++ + +++vg+ +v+ +    +k  +v+l+ + l  ++s+++ +i +    + k+ e+ + +++ +++ E ++g  +V+afg ++
    KOO23630.1 216 KIDQSIASQFKDVVVFAFNLVGIALVCSLgtGDPKAQIVVLSAVALATICSWLVYSIYRvvarEQKRLESVTKSPLLAFFAELVQGAAVVRAFGEQQ 312
                   *********************988888876578*******************9999886111155566778888*********************** PP

                   HHHHHHHHHHHHHHHHHHH.HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSTHHHHHHHHHHHHHHHHHH CS
  ABC_membrane 201 yflekfekaleeakkagik.kaianglligitqllgllsyalalwfGttlvisgelsvgdlvvflslfailfgal 274
                   + +e  +  +++a++  +     +n +l ++++l+g+l++a +  ++++l ++ +l  gd+  +ls++++++ga+
    KOO23630.1 313 RIIEILDARVDNANRTLYNlEGQTNQWLRVTMNLIGSLVTASV--VAAVLWQREDLGGGDAGLTLSYSTQFVGAV 385
                   *************9987752789*******************9..89999999******************9986 PP

>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   93.9   0.0   7.7e-30   1.2e-26       3     137 .]     455     601 ..     453     601 .. 0.96

  Alignments for each domain:
  == domain 1  score: 93.9 bits;  conditional E-value: 7.7e-30
                 EEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGGB-HHHCCHCEEEE-SS--S-TTSBHHHH......HHHTCHHHHHHHSTTG CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx......xxxxxxxxxxxxxxxx RF
    ABC_tran   3 nvslklkegekvaivGenGaGKStLlkllagllkpteGeilldgkdlkeqeleslrkeigvlpqepqlfpeltvren......esdeeiekalsklglk 95 
                  +s+++ + ++v++vG++GaGKS+L+ +l + ++  +G+i +dg d+++ +l++lr+ +++++qep+lf+++ vr n      ++d+e+ +al++ gl+
  KOO23630.1 455 ALSFSVPARTRVGVVGRTGAGKSSLAVALFRTVELSAGSIVIDGIDVRRLSLQQLRSCLSIIQQEPTLFQGT-VRYNlapvteHADAELWDALRRSGLD 552
                 689*********************************************************************.*********999999******99999 PP

                 G.......TTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTTT CS
                 x.......xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  96 e.......lkdtvvksspssLSgGqkqrvalarallkkpkllllDEpta 137
                           d  +++++s+LS G++q +++ara+l+++++l++DE+ta
  KOO23630.1 553 AkveamsgGLDASISEGGSNLSAGERQLLCMARAMLRRRPILVMDEATA 601
                 999999997777888999*****************************96 PP

>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.9   0.1     0.021        31      27      44 ..     466     483 ..     453     494 .. 0.85
   2 !   25.1   0.0   6.8e-09     1e-05     121     207 ..     540     640 ..     493     644 .. 0.78

  Alignments for each domain:
  == domain 1  score: 3.9 bits;  conditional E-value: 0.021
                 EEEEESTTSSHHHHHHHH CS
                 xxxxxxxxxxxxxxxxxx RF
       SMC_N  27 taivGpNGSGKsnlldAi 44 
                   +vG+ G+GKs+l  A+
  KOO23630.1 466 VGVVGRTGAGKSSLAVAL 483
                 469***********9998 PP

  == domain 2  score: 25.1 bits;  conditional E-value: 6.8e-09
                 HHHHHHHHCTT-STT.................CS-HHHHHHHHHHHHHHHHCCS--SEEEECTTTTTS-HHHHHHHHHHHHHHCTT.SEEEEE-SSHHH CS
                 xxxxxxxxxxxxxxx.................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxx RF
       SMC_N 121 kevsellesagiske.................lLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvkkvaellkekskn.aQfivislreem 201
                 +e+ + l+++g++ +                 +LS Ge++L+     +A  + +++p+ ++De  a  D+   + + +++k++ k  + +i i++r ++
  KOO23630.1 540 AELWDALRRSGLDAKveamsggldasiseggsNLSAGERQLLC----MARAMLRRRPILVMDEATASVDHVTDTHIQQMVKRDFKGnCTVITIAHRLHT 634
                 455556666666666888888888888888889*******965....56789*****************************887644999*****9988 PP

                 CCC-SC CS
                 xxxxxx RF
       SMC_N 202 lekadk 207
                 ++  d+
  KOO23630.1 635 VAFYDR 640
                 877666 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   0.1   2.4e-05     0.036       1      22 [.     465     486 ..     465     503 .. 0.86

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 2.4e-05
                 EEEEEESTTSSHHHHHHHHHTS CS
    MMR_HSR1   1 evaivGrpNvGKStLinaltge 22 
                 +v++vGr+ +GKS+L  al+++
  KOO23630.1 465 RVGVVGRTGAGKSSLAVALFRT 486
                 69****************9986 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   0.1   2.9e-05     0.043      27     169 ..     466     625 ..     452     626 .. 0.69

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 2.9e-05
      AAA_16  27 vllsGesGvGKsslvrellralekd.ggiflrgkcdqlesaipysalaqalareellrqllde............aesaeleawrekleeala...... 106
                 v ++G  G GKssl+ +l+r +e + g i++ g  ++    +++++l ++l   ++++q+ +             +e a++e w++  ++ l       
  KOO23630.1 466 VGVVGRTGAGKSSLAVALFRTVELSaGSIVIDGIDVRR---LSLQQLRSCL---SIIQQEPTLfqgtvrynlapvTEHADAELWDALRRSGLDakveam 558
                 6699***********99999999884588888888888...8888888888...888888888888877777777555566666665555444745443 PP

      AAA_16 107 ..avpelagaea.......srllellkrll..allsrderplvlvlDdlqwadeaslql.laaLlrlleskpllv 169
                           +        s l +  ++ll  a++   +r  +lv+D++    ++  +  +++++++   ++++v
  KOO23630.1 559 sgG-------LDasiseggSNLSAGERQLLcmARAML-RRRPILVMDEATASVDHVTDThIQQMVKRDFKGNCTV 625
                 331.......334455677666666666665444444.4448999999988877777777888888765556666 PP

>> DUF87  Helicase HerA, central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   0.0       5.7   8.5e+03     130     180 ..     278     337 ..     263     351 .. 0.59
   2 ?   13.4   0.2   4.2e-05     0.063      24      58 ..     464     496 ..     458     498 .. 0.78

  Alignments for each domain:
  == domain 1  score: -3.4 bits;  conditional E-value: 5.7
       DUF87 130 a.keekeklssdepveklleelk........kekeelrklknqaiarlldkledllrkgg 180
                 + +++ e+++   ++++++e ++         e++ + ++ +    + +++l++l  +++
  KOO23630.1 278 ReQKRLESVTKSPLLAFFAELVQgaavvrafGEQQRIIEILDARVDNANRTLYNLEGQTN 337
                 246777888888888888777776666655433335555555555555555555554444 PP

  == domain 2  score: 13.4 bits;  conditional E-value: 4.2e-05
       DUF87  24 rHlAilgsTGsGKSntvavLleellekkgatilil 58 
                  +++++g+TG+GKS ++  L++ +    +a  +++
  KOO23630.1 464 TRVGVVGRTGAGKSSLAVALFRTVE--LSAGSIVI 496
                 689*************999987654..44544444 PP

>> Chlorosome_CsmC  Chlorosome envelope protein C
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.1   0.00014       0.2      34      90 ..     174     230 ..     155     240 .. 0.87
   2 ?   -3.9   0.0       8.5   1.3e+04      39      49 ..     343     353 ..     334     360 .. 0.65

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 0.00014
  Chlorosome_CsmC  34 savvgglelaGsvvetvagtvgslidatGiskllgstsgvvgetidrvaitvkdvsr 90 
                      ++v+ + +l G++v +v  +  s  +at ++++l++ sg +++  + +a   kdv  
       KOO23630.1 174 ASVAASKKLHGGMVRSVMHATVSWYEATPLGRILNRFSGDISKIDQSIASQFKDVVV 230
                      67889999**********************************999999999999965 PP

  == domain 2  score: -3.9 bits;  conditional E-value: 8.5
  Chlorosome_CsmC  39 glelaGsvvet 49 
                      +++l+Gs+v +
       KOO23630.1 343 TMNLIGSLVTA 353
                      67777777643 PP

>> IstB_IS21  IstB-like ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   0.0   0.00049      0.74      40      69 ..     455     485 ..     433     526 .. 0.71
   2 ?   -0.3   0.0      0.53   7.9e+02     105     147 ..     587     628 ..     573     641 .. 0.78

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 0.00049
   IstB_IS21  40 tlsf.iekkenivllGpsGvGKshlaialgv 69 
                 +lsf + ++  + ++G +G+GKs la+al +
  KOO23630.1 455 ALSFsVPARTRVGVVGRTGAGKSSLAVALFR 485
                 55554566778889**************954 PP

  == domain 2  score: -0.3 bits;  conditional E-value: 0.53
   IstB_IS21 105 rllkvdllilDdlgllpldqaeaellfeviekryerrsiiits 147
                  l +  +l++D+ ++  +d+   +++ +++++ ++ + ++it 
  KOO23630.1 587 MLRRRPILVMDE-ATASVDHVTDTHIQQMVKRDFKGNCTVITI 628
                 345557888888.5678999999999******99999999996 PP

>> DUF815  Protein of unknown function (DUF815)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   0.00013      0.19      58     107 ..     468     521 ..     459     524 .. 0.87

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00013
      DUF815  58 LwGarGtGKSslvkallneyaeeg....Lrlievekedlkelpklvellrerpe 107
                 ++G  G+GKSsl  al+++++ +     +  i+v++ +l++l + +++++++p+
  KOO23630.1 468 VVGRTGAGKSSLAVALFRTVELSAgsivIDGIDVRRLSLQQLRSCLSIIQQEPT 521
                 689**************999877667778889*****************99986 PP

>> ATP_synt_H  ATP synthase subunit H
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.2       7.3   1.1e+04       3      36 ..     161     194 ..     155     197 .. 0.60
   2 ?   11.5   1.4   0.00022      0.32       6      46 ..     230     272 ..     227     273 .. 0.71

  Alignments for each domain:
  == domain 1  score: -3.0 bits;  conditional E-value: 7.3
                 HHHHHHHHHHHTCSCSSS-S.TTHHHHHHHHHHH CS
  ATP_synt_H   3 lvgtiifavlgvvatfvvpkgenrglirvlvilt 36 
                 +++t++  ++   a++ + k+ + g++r+++  t
  KOO23630.1 161 IAVTMVRNIILPYASVAASKKLHGGMVRSVMHAT 194
                 4455555555555556666766666777766555 PP

  == domain 2  score: 11.5 bits;  conditional E-value: 0.00022
                 HHHHHHHHTCSCSSS-S...TTHHHHHHHHHHHHHHHHHTCHH CS
  ATP_synt_H   6 tiifavlgvvatfvvpkg..enrglirvlviltavccWlfWlc 46 
                  ++f ++g+++++ +  g  + + ++ ++v l+++c Wl++ +
  KOO23630.1 230 VFAFNLVGIALVCSLGTGdpKAQIVVLSAVALATICSWLVYSI 272
                 44555666666655544454888899999**********9986 PP

>> Peptidase_A24  Type IV leader peptidase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.3   3.4      0.91   1.4e+03      51      99 ..     230     272 ..     106     305 .. 0.67
   2 ?    8.3   0.1    0.0021       3.1      41      83 ..     337     378 ..     321     395 .. 0.81

  Alignments for each domain:
  == domain 1  score: -0.3 bits;  conditional E-value: 0.91
  Peptidase_A24  51 lgalvgalvlllislvdeq...amGgGDvklaavlgaflgwerlllavlvai 99 
                    + a+          lv       +G GD k  +v+  ++ + ++   ++++i
     KOO23630.1 230 VFAF---------NLVGIAlvcSLGTGDPKAQIVVLSAVALATICSWLVYSI 272
                    2221.........122222333789999998888888887777755555555 PP

  == domain 2  score: 8.3 bits;  conditional E-value: 0.0021
  Peptidase_A24  41 lglpnlaqavlgalvgalvlllislvdeqamGgGDvklaavlg 83 
                     +++ ++  ++g lv+a v+ + +l++++ +GgGD+ l +  +
     KOO23630.1 337 NQWLRVTMNLIGSLVTASVVAA-VLWQREDLGGGDAGLTLSYS 378
                    5678888999999999999999.9***********99877655 PP

>> SLATT_1  SMODS and SLOG-associating 2TM effector domain 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.1      0.89   1.3e+03      54      82 ..     183     211 ..     152     223 .. 0.65
   2 ?    7.4   0.5    0.0027         4      24      78 ..     223     277 ..     216     285 .. 0.86
   3 ?   -0.4   0.1      0.69     1e+03      31      74 ..     350     394 ..     318     400 .. 0.55

  Alignments for each domain:
  == domain 1  score: -0.8 bits;  conditional E-value: 0.89
     SLATT_1  54 lvgvlaavaaallaWlelkqyeelaaaYs 82 
                   g++ +v+ a ++W e++ + +   ++s
  KOO23630.1 183 HGGMVRSVMHATVSWYEATPLGRILNRFS 211
                 44788899999999999988777777766 PP

  == domain 2  score: 7.4 bits;  conditional E-value: 0.0027
     SLATT_1  24 akrwrlllillellalllaalrafgelsvdlvgvlaavaaallaWlelkqyeela 78 
                 +++  +++++++l++++l+    +g+ + ++v + a++ a++ +Wl ++ y+ +a
  KOO23630.1 223 SQFKDVVVFAFNLVGIALVCSLGTGDPKAQIVVLSAVALATICSWLVYSIYRVVA 277
                 566678999*********9999999999999***************998887665 PP

  == domain 3  score: -0.4 bits;  conditional E-value: 0.69
     SLATT_1  31 lillellalllaalrafgelsv.dlvgvlaavaaallaWlelkqy 74 
                 l+ ++++a++l   + +g  +    +   + +++a+ a+l +k +
  KOO23630.1 350 LVTASVVAAVLWQREDLGGGDAgLTLSYSTQFVGAVNAFLTFKSM 394
                 222333333333333333333345566667777777777777765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (688 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       563  (0.0314016); expected 358.6 (0.02)
Passed bias filter:                      439  (0.0244855); expected 358.6 (0.02)
Passed Vit filter:                        66  (0.00368119); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.64u 0.26s 00:00:00.90 Elapsed: 00:00:00.41
# Mc/sec: 5014.67
//
Query:       KOO23631.1  [L=1122]
Description: voltage-gated ion channel superfamily, partial [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
   4.9e-155  513.9  50.9    1.4e-51  175.1   4.0    4.0  4  Ion_trans    Ion transport protein
    9.1e-06   24.6  58.3      0.037   12.7   0.8    9.0  9  PKD_channel  Polycystin cation channel
  ------ inclusion threshold ------
      0.015   16.2   2.8        5.7    8.0   0.0    3.8  4  DUF4834      Domain of unknown function (DUF4834)


Domain annotation for each model (and alignments):
>> Ion_trans  Ion transport protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  171.9   3.7   2.2e-54   1.3e-50      19     241 ..       1     282 [.       1     285 [. 0.93
   2 !  147.7  12.7   5.7e-47   3.4e-43       3     241 ..     387     638 ..     385     640 .. 0.89
   3 !  175.1   4.0   2.4e-55   1.4e-51       3     244 ..     729     992 ..     727     993 .. 0.92
   4 !   38.2   6.8   1.5e-13     9e-10       2      84 ..    1039    1119 ..    1038    1122 .] 0.95

  Alignments for each domain:
  == domain 1  score: 171.9 bits;  conditional E-value: 2.2e-54
                 HHCCCSSSSHHHHC.HHHHHHHHHHHHHHHHHHHHHHHHHTH.HHHHHHCHSHHHHHHHHHHHHHHHHH.HHHHHHHHHHHHHHHHGGGGGGHHHCHSH CS
   Ion_trans  19 laletyfpedelek.tileilelvftaiftlemllkilalgl.likkrYlrdpwnilDflvvlpsllsl.vlseesllllsvlrlfrvlrllklisrle 114
                 +a+e++ +++ + k  il ++e+vf++iftle+l k la+ l  ++  Ylrdpw+ lDflvv++++l + ++   s+++ s+lr+fr lr+l++++r++
  KOO23631.1   1 MAYESPLDPEGTQKeAILGVFEWVFLIIFTLELLSKALAYSLfWHREAYLRDPWCQLDFLVVSLAWLPIlFP---SMGNYSALRAFRALRPLRALKRMP 96 
                 789999999888889************************999999999*******************88444...59********************** PP

                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCC...................................................... CS
   Ion_trans 115 glrtlvtalirsvkdllnvlllllvvlfifaligvqlfkgklrek...................................................... 159
                 g+  lv+ ++ ++++++nv+ l  +v++if+++g++lfkg+l+++                                                      
  KOO23631.1  97 GMPLLVQWILSVLPKMGNVFALGGFVFLIFGIVGMELFKGSLHYRcalpgfeetpghpisdvrrrllearvasdagvsdidqtawdtgipcnshlddaq 195
                 ********************************************************************9999999999999998888888877766665 PP

                 .....CCSCCSTSSSTTTSSSSSSHHHHHHHHHHHHTTSSHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
   Ion_trans 160 .....necaktwenpnngntnFdnfftallwlfrlmttegwgdilyatldekskvaliyfvifiilgsflllNlliaviadnfqelt 241
                      ++ca+ +++pn+g t+Fd++   +++ f+++t + w + +y  + + s + ++yfv++i++++f+++Nl++avi   +++++
  KOO23631.1 196 qcpdgSSCAYFDKDPNDGLTSFDSVAIFFITFFQSITCDFWATSMYSLMAAFSPWVWMYFVLIIMVVGFFVINLFLAVIYLEYSDTR 282
                 5554333************************************************************************98888776 PP

  == domain 2  score: 147.7 bits;  conditional E-value: 5.7e-47
                 HHHHHHHHHHHHHHHHHHCCCSSSSHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHCHSHHHHHHHHHHHHHHHHH......HHHH.....H CS
   Ion_trans   3 vfelfilllillncvflaletyfpedelektileilelvftaiftlemllkilalgllikkrYlrdpwnilDflvvlpsllsl......vlse.....e 90 
                 +++  ++ l+l+n++++++ +  +++e+    le +  v+t+ f++em +k+++lg+     Y+ d wn+lD ++v++s++++      +        +
  KOO23631.1 387 WLNHTSTALVLVNMLLMCMAYEGMSEEYA-ADLESAAAVITWCFIIEMGIKLIGLGC---AAYWADGWNCLDGTIVILSIIEMlvtwlsT--AsganvS 479
                 889999*************8888887777.99*************************...***********************8776651..1456668 PP

                 HHHHHHHHHHHGGGGGGHHHCHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCC.....CC.....SCCSTSSSTTTSSSSSSH CS
   Ion_trans  91 sllllsvlrlfrvlrllklisrleglrtlvtalirsvkdllnvlllllvvlfifaligvqlfkgklrek.....ne.....caktwenpnngntnFdnf 179
                 ++ +l++lr++rvlr+l+l+++++gl  +v ++ir+++++ n+++l+++ +f+fal+g+ql +g +  k     +      c   ++ +++++++Fd  
  KOO23631.1 480 AFRVLRMLRMLRVLRVLRLMRSWKGLYKIVITFIRALPQMKNLVVLVVLTMFMFALLGMQLIGGLYTPKtgyslEPcpgglC-ADESLQEKPYYHFDYC 577
                 9*************************************************************99998886665511566654.455666689******* PP

                 HHHHHHHHHHHTTSSHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
   Ion_trans 180 ftallwlfrlmttegwgdilyatldekskvaliyfvifiilgsflllNlliaviadnfqelt 241
                 + a++++f l+t+e w + l +     +    ++f+ +++lg flllNlliavi + f+e  
  KOO23631.1 578 GPAMITVFILLTGE-WFEALEPAAYILGAPVSLFFIFVVMLGKFLLLNLLIAVILNEFAEES 638
                 **************.888888888777899****************************9975 PP

  == domain 3  score: 175.1 bits;  conditional E-value: 2.4e-55
                 HHHHHHHHHHHHHHHHHHCCCSSSSHHHHC.HHHHHHHHHHHHHHHHHHHHHHHHHTH.HHHHHHCHSHHHHHHHHHHHHHHHHHHHHH.HHHHHHHHH CS
   Ion_trans   3 vfelfilllillncvflaletyfpedelek.tileilelvftaiftlemllkilalgl.likkrYlrdpwnilDflvvlpsllslvlse.esllllsvl 98 
                  f+ +i+  i++++++lal+++    e++  + l++++l+ft++f+ em  k+++lg+ + k  Yl++pwn lDf +v++sl  l +++  +l  l+vl
  KOO23631.1 729 QFDQVIIAAIIVSSICLALDSPRLDPESDLaHTLQTMDLFFTGLFFGEMMAKVITLGFlFTKDAYLKSPWNQLDFCIVMISLTLLLAESiPQLQPLRVL 827
                 5999***************888888777779****************************************************994444457899**** PP

                 HHHGGGGGGHHHCHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCCCC...........SCCSTSSSTTTSSSSSSHHHHHHHH CS
   Ion_trans  99 rlfrvlrllklisrleglrtlvtalirsvkdllnvlllllvvlfifaligvqlfkgklrekne...........caktwenpnngntnFdnfftallwl 186
                 r+ rvlr+l+l+sr  g+r ++t+l+++++d+ nv+ +++v+ f+fa++g+qlf g++  +++           +  +w+np  ++  Fd+f++++l+l
  KOO23631.1 828 RITRVLRPLRLVSRNAGMRLIITSLFKAMPDVSNVVGVIFVIQFVFAVVGMQLFSGSFGSCSNpsiltrlecddKDSRWSNP--PTGCFDDFGQSMLAL 924
                 *************************************************************555666667755555667777..5566*********** PP

                 HHHHTTSSHHHHHHHHHHHS..........HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
   Ion_trans 187 frlmttegwgdilyatldek..........skvaliyfvifiilgsflllNlliaviadnfqeltere 244
                   + t++ w+  ++ ++++            + a iy +++++++ ++ +Nl+++v++d+f +++++e
  KOO23631.1 925 YIMSTGDSWEKPMWIMMGAAgsghaavrndFSAASIYALAWMLMSYIFAMNLFVGVVVDSFRRIQQQE 992
                 *****************************999*********************************997 PP

  == domain 4  score: 38.2 bits;  conditional E-value: 1.5e-13
                  HHHHHHHHHHHHHHHHHHHCCCSSSSHHHHC.HHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHCHSHHHHHHHHHHHHHHHH CS
   Ion_trans    2 svfelfilllillncvflaletyfpedelek.tileilelvftaiftlemllkilalgllikkrYlrdpwnilDflvvlpslls 84  
                  ++f+++i+++i+ n+ ++al+++  e+++    + +++   f +i+ +e++lk+ a+g     +Y+ d w+++Df+ v++sll+
  KOO23631.1 1039 PIFDSIITFVIIANISVMALDFWGIEQDEQLfGFYNTAMQSFSYIYYIECILKMAAMGT---DNYFADNWCRFDFFLVCTSLLD 1119
                  68************************87777999999**********************...******************9986 PP

>> PKD_channel  Polycystin cation channel
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.0   0.1   0.00068         4     213     263 ..      24      72 ..      10      87 .. 0.67
   2 ?    1.4   5.8     0.016        98     398     424 ..     253     279 ..     214     281 .. 0.70
   3 !    6.8   0.3   0.00038       2.3     219     265 ..     423     470 ..     405     481 .. 0.83
   4 !    7.3   4.7   0.00028       1.7     304     359 ..     484     542 ..     470     547 .. 0.80
   5 !   12.7   0.8   6.1e-06     0.037     371     425 ..     580     636 ..     565     637 .. 0.75
   6 !    7.9   0.0   0.00017         1     217     261 ..     772     814 ..     740     822 .. 0.68
   7 !    8.7   0.2    0.0001      0.61     309     359 ..     832     882 ..     823     890 .. 0.87
   8 ?    0.2   0.9     0.039   2.3e+02     398     424 ..     960     986 ..     954     988 .. 0.78
   9 !    4.7   0.7    0.0016       9.8     188     258 ..    1048    1118 ..    1036    1120 .. 0.88

  Alignments for each domain:
  == domain 1  score: 6.0 bits;  conditional E-value: 0.00068
                  HHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHH CS
  PKD_channel 213 lievvfvvfvlyfvveeilkirkerasylrsvwnlldlaivvlsvvlivla 263
                  +++++f++   + +++ ++ +  +r++ylr+ w +ld+++v l  + i++ 
   KOO23631.1  24 VFLIIFTLE--LLSKALAYSLFWHREAYLRDPWCQLDFLVVSLAWLPILFP 72 
                  222222222..234555666677889***************9988877765 PP

  == domain 2  score: 1.4 bits;  conditional E-value: 0.016
                  HHHHHHHHHHHHHHHHHHHHHHHT-XX CS
  PKD_channel 398 llllalvflvifillnlflaiindsye 424
                  +++++++++v f ++nlfla+i+ +y+
   KOO23631.1 253 MYFVLIIMVVGFFVINLFLAVIYLEYS 279
                  5778888888999**********9997 PP

  == domain 3  score: 6.8 bits;  conditional E-value: 0.00038
                  HHHHHHHHHHHH-------.-------HHHHHHHHHHHHHHHHHHHHH CS
  PKD_channel 219 vvfvlyfvveeilkirker.asylrsvwnlldlaivvlsvvlivlail 265
                   v+   f++e+ +k+   + a+y  + wn+ld  iv+ls++ +++  l
   KOO23631.1 423 AVITWCFIIEMGIKLIGLGcAAYWADGWNCLDGTIVILSIIEMLVTWL 470
                  45556789999999999999********************99988765 PP

  == domain 4  score: 7.3 bits;  conditional E-value: 0.00028
                  HHHHHHHGGGGG------------...------------HHHHHHHHHHHHHHHHHHSS CS
  PKD_channel 304 lvflttlkllkvlrfnktlslltk...tlaralkdvlgfalvivilflayaqlgvllfG 359
                  l +l +l++l+vlr+++ ++ l k   t  ral+++  + +++v+ ++++a lg+ l+G
   KOO23631.1 484 LRMLRMLRVLRVLRLMRSWKGLYKiviTFIRALPQMKNLVVLVVLTMFMFALLGMQLIG 542
                  3468889999999999998877664447899*********************9998887 PP

  == domain 5  score: 12.7 bits;  conditional E-value: 6.1e-06
                  HHHHHHHHHTT---HHHHHHH-TTHHH...HHHHHHHHHHHHHHHHHHHHHHHT-XXX CS
  PKD_channel 371 siltlfrlilgdfqytelesgnrvLGp...llllalvflvifillnlflaiindsyee 425
                  +++t+f+ +l    +++le +  +LG    l+++  v+l  f+llnl++a+i ++++e
   KOO23631.1 580 AMITVFI-LLTGEWFEALEPAAYILGApvsLFFIFVVMLGKFLLLNLLIAVILNEFAE 636
                  4666654.5566779***********6344666667777789***********99976 PP

  == domain 6  score: 7.9 bits;  conditional E-value: 0.00017
                  HHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHH CS
  PKD_channel 217 vfvvfvlyfvveeilkirkerasylrsvwnlldlaivvlsvvliv 261
                  +f   +++ v++  + + k+  +yl+s wn+ld+ iv++s+ l++
   KOO23631.1 772 LFFGEMMAKVITLGFLFTKD--AYLKSPWNQLDFCIVMISLTLLL 814
                  33334444444444444555..9****************987765 PP

  == domain 7  score: 8.7 bits;  conditional E-value: 0.0001
                  HHGGGGG------------------------HHHHHHHHHHHHHHHHHHSS CS
  PKD_channel 309 tlkllkvlrfnktlslltktlaralkdvlgfalvivilflayaqlgvllfG 359
                  +l+ l++++ n+ ++l+ + l++a++dv  +  vi+++ +++a++g+ lf+
   KOO23631.1 832 VLRPLRLVSRNAGMRLIITSLFKAMPDVSNVVGVIFVIQFVFAVVGMQLFS 882
                  5777888888999********************************999987 PP

  == domain 8  score: 0.2 bits;  conditional E-value: 0.039
                  HHHHHHHHHHHHHHHHHHHHHHHT-XX CS
  PKD_channel 398 llllalvflvifillnlflaiindsye 424
                  ++ la ++++ + ++nlf+ ++ ds+ 
   KOO23631.1 960 IYALAWMLMSYIFAMNLFVGVVVDSFR 986
                  45566666777778**********997 PP

  == domain 9  score: 4.7 bits;  conditional E-value: 0.0016
                   S-EEEEEEEEE------SHHHHHHHHHHHHHHHHHHHHHHHHH-------.-------HHHHHHHHHHHHHH CS
  PKD_channel  188 gvlpsvsvqsvkLlryvtklslflllievvfvvfvlyfvveeilkirker.asylrsvwnlldlaivvlsvv 258 
                   ++++++sv++ ++    ++ +lf+     ++  f   + +e ilk+   +  +y+ + w   d+++v+ s++
   KOO23631.1 1048 VIIANISVMALDFWGIEQDEQLFGFY-NTAMQSFSYIYYIECILKMAAMGtDNYFADNWCRFDFFLVCTSLL 1118
                   6789999****************999.77778888888899*********9*****************9875 PP

>> DUF4834  Domain of unknown function (DUF4834)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.0   0.0    0.0039        23       8      60 ..     253     304 ..     250     337 .. 0.54
   2 ?   -3.2   0.2       2.8   1.7e+04       5      26 ..     524     545 ..     520     550 .. 0.64
   3 ?    8.0   0.0   0.00095       5.7       4      83 ..     609     688 ..     607     694 .. 0.65
   4 ?   -3.5   0.3         3   1.8e+04       5      19 ..     864     878 ..     861     890 .. 0.52

  Alignments for each domain:
  == domain 1  score: 6.0 bits;  conditional E-value: 0.0039
     DUF4834   8 lifiiailviglsilsvilrtvfglgsrkkssksaqkqfgnstnsnqqksqsr 60 
                 + f+++i+v+g+ +++  l  ++   s ++++ + +++++ +  s+  ++qs+
  KOO23631.1 253 MYFVLIIMVVGFFVINLFLAVIYLEYSDTRAQIKLERSSTAQPASS-VRTQSS 304
                 5677888888888887777777543333333212222211111111.112111 PP

  == domain 2  score: -3.2 bits;  conditional E-value: 2.8
     DUF4834   5 lfilifiiailviglsilsvil 26 
                   +++ +++ +++g+ +++ ++
  KOO23631.1 524 VLVVLTMFMFALLGMQLIGGLY 545
                 3336666777777777777666 PP

  == domain 3  score: 8.0 bits;  conditional E-value: 0.00095
     DUF4834   4 Llfilifiiailviglsilsvilrtvfglgsrkkssksaqkqfgnstnsnqqksqsrsetkeegeiieeersekeakrkk 83 
                 L+fi+++++  +++   +++vil+++   +s  +s+   +++++ +++s +++ + +s+  +eg+  +++ + + ++rk 
  KOO23631.1 609 LFFIFVVMLGKFLLLNLLIAVILNEFAEESSSPPSTIARSDTSRDRFTSRARNPSITSRDAAEGDHASHDADARDHNRKA 688
                 56777777777777777777777777555555555555555666667766666666667777777777777777777764 PP

  == domain 4  score: -3.5 bits;  conditional E-value: 3
     DUF4834   5 lfilifiiailvigl 19 
                 ++i+++ ++ +v+g+
  KOO23631.1 864 GVIFVIQFVFAVVGM 878
                 444444444444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1122 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       837  (0.0466841); expected 358.6 (0.02)
Passed bias filter:                      351  (0.0195772); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.75u 0.30s 00:00:01.05 Elapsed: 00:00:00.43
# Mc/sec: 7845.63
//
Query:       KOO23632.1  [L=427]
Description: hypothetical protein Ctob_009499 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.1e-05   23.7   1.6      0.056   13.5   0.0    3.0  3  LRR_6           Leucine Rich repeat
  ------ inclusion threshold ------
       0.11   12.6   0.0       0.21   11.6   0.0    1.4  1  Dehydratase_SU  Dehydratase small subunit


Domain annotation for each model (and alignments):
>> LRR_6  Leucine Rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.0       1.2     1e+04      14      24 .]      81      91 ..      80      91 .. 0.87
   2 !    8.1   0.1   0.00033         3       6      24 .]     142     160 ..     140     160 .. 0.87
   3 !   13.5   0.0   6.3e-06     0.056       4      24 .]     181     201 ..     179     201 .. 0.93

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 1.2
       LRR_6 14 dIgDeGaeaLa 24
                d++D+ a aLa
  KOO23632.1 81 DVDDDAAYALA 91
                68999999998 PP

  == domain 2  score: 8.1 bits;  conditional E-value: 0.00033
       LRR_6   6 teLdLsgNdIgDeGaeaLa 24 
                 + L L gN IgD GaeaLa
  KOO23632.1 142 ENLWLGGNLIGDYGAEALA 160
                 556699************8 PP

  == domain 3  score: 13.5 bits;  conditional E-value: 6.3e-06
       LRR_6   4 hLteLdLsgNdIgDeGaeaLa 24 
                  L+ L L +N IgD Ga aLa
  KOO23632.1 181 RLRRLGLYSNAIGDTGALALA 201
                 69******************8 PP

>> Dehydratase_SU  Dehydratase small subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   2.4e-05      0.21      57     107 ..      57     112 ..      48     126 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 2.4e-05
  Dehydratase_SU  57 esagrkqlaknlrRaaEl.....vkvpderileiYnalrPyrstkeellaiadele 107
                     ++ag  ql++ + R aEl     ++v+d+   ++ +al+P r+ + e+l++ +++ 
      KOO23632.1  57 SQAGSAQLEESIGRLAELrhmwlTDVDDDAAYALAEALQPGRARRLEMLRMGKDVY 112
                     6788899999999999954444499**************************99875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (427 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       477  (0.0266049); expected 358.6 (0.02)
Passed bias filter:                      308  (0.0171789); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.47u 0.28s 00:00:00.75 Elapsed: 00:00:00.43
# Mc/sec: 3013.17
//
Query:       KOO23633.1  [L=392]
Description: hypothetical protein Ctob_006747 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    5.1e-14   52.1   0.0    8.8e-14   51.4   0.0    1.4  1  cNMP_binding     Cyclic nucleotide-binding domain
  ------ inclusion threshold ------
      0.024   13.8   0.0      0.077   12.1   0.0    1.8  2  Serine_protease  Gammaproteobacterial serine protease


Domain annotation for each model (and alignments):
>> cNMP_binding  Cyclic nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.4   0.0   9.8e-18   8.8e-14       2      89 .]       4      93 ..       3      93 .. 0.91

  Alignments for each domain:
  == domain 1  score: 51.4 bits;  conditional E-value: 9.8e-18
                  EEE-TT-EEE-TTSB-SEEEEEEES-EEEEEEETTS.EEEEEEE...-TTEEESHHHHHHTS--SSEEEESSTEEEEEEEHHHHHHHHHH- CS
  cNMP_binding  2 rsfkagevifrqGdpadslyivlsGevrvyrlsedgkevvlavl...gpGdlfGelalltgeprtatvvAltdsellalprddflellqqd 89
                  + ++++evi+ qGdp ++++i+++G v+ + + e+ +e+  + l   g+ +++G l ll  +p+  tv+   d++++al+  +f+el++++
    KOO23633.1  4 VDLRKNEVIYYQGDPTTEMFIITRGAVSRT-RLENNREHEHNNLgaqGSEATIGGLHLLLSDPYYSTVRCTQDTTCYALSSVQFHELVKDN 93
                  6789*************************7.77888888888885557779********99**************************9875 PP

>> Serine_protease  Gammaproteobacterial serine protease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.0       0.5   4.5e+03     231     254 ..      96     119 ..      81     122 .. 0.70
   2 ?   12.1   0.0   8.6e-06     0.077     172     269 ..     287     386 ..     275     389 .. 0.84

  Alignments for each domain:
  == domain 1  score: -3.5 bits;  conditional E-value: 0.5
  Serine_protease 231 glkealktfvkvnalkevliRspl 254
                       +ke+++++ k  ++++v++R++l
       KOO23633.1  96 LAKEIIYALAKDVLAQQVVMRTAL 119
                      457888888888888999999875 PP

  == domain 2  score: 12.1 bits;  conditional E-value: 8.6e-06
  Serine_protease 172 elynkllaGalsGviAtvlttifnsykDkkllaskv....engrlltaspftllkqlkshvkeglkealktfvkvnalkevliRspltaliFai 261
                      +  +++++ + +Gv  + l+ i+  +   kll+ +     + g l+ +s++ l   l + + + ++ al ++ +v + k v+iRs++ a  Fai
       KOO23633.1 287 TAARNFVGSMSAGVACGYLSHIPHNLSALKLLQPHKsyaqHFGGLVEDSAARL--PLGNGFPRPARWALAAVATVLVPKGVAIRSTQIAGSFAI 378
                      66788999999999999999999999999999865322235588999999988..5788999999999999999999***************** PP

  Serine_protease 262 ifgvdell 269
                      i g+ +l+
       KOO23633.1 379 INGTINLM 386
                      **987776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (392 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       393  (0.0219198); expected 358.6 (0.02)
Passed bias filter:                      337  (0.0187964); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.49u 0.25s 00:00:00.74 Elapsed: 00:00:00.42
# Mc/sec: 2776.43
//
Query:       KOO23634.1  [L=299]
Description: peptidyl-prolyl cis-trans fkbp-type [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.3e-19   68.3   0.0    9.1e-19   67.6   0.0    1.4  1  FKBP_C      FKBP-type peptidyl-prolyl cis-trans isomerase
    1.6e-15   57.8   0.0    2.8e-15   57.0   0.0    1.4  1  Rotamase    PPIC-type PPIASE domain
    8.6e-14   52.1   0.0    1.5e-13   51.3   0.0    1.3  1  Rotamase_3  PPIC-type PPIASE domain
     0.0001   23.2   0.0    0.00024   22.0   0.0    1.6  1  FKBP_N      Domain amino terminal to FKBP-type peptidyl-proly


Domain annotation for each model (and alignments):
>> FKBP_C  FKBP-type peptidyl-prolyl cis-trans isomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.6   0.0     2e-22   9.1e-19       2      94 .]      49     141 ..      48     141 .. 0.91

  Alignments for each domain:
  == domain 1  score: 67.6 bits;  conditional E-value: 2e-22
                 SCBB-TTCEEEEEEEEEETTSSEEEEHCCHTSEEEEETTSSS.SCHHHHHHHTTSBTT-EEEEEEEGGGTTTTTTBCTTTB.TTSEEEEEEEEE CS
      FKBP_C   2 keeakegdtVtvhykgkledgkvfdssrsrakplefkvGsgq.vikGfeealegmkvGekrtltippelaYgekglaggvippnatLvFeveLl 94 
                 ++++++ +++++ y+g+l dg+vfdss +++++++  + +   vi G+ eal+ m+ G++++l ip++laYg++g  +  ip++at++F+ e+l
  KOO23634.1  49 TRKPTNHQKCKCRYTGTLIDGTVFDSS-QDGEDMSSAIFAPAdVIAGWTEALKLMSPGDRWKLYIPSKLAYGSRGNVHIGIPGDATIIFDLEML 141
                 577999*********************.777777777776444*********************************9999**********9985 PP

>> Rotamase  PPIC-type PPIASE domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.0   0.0   6.3e-19   2.8e-15       1      95 [.     187     278 ..     187     280 .. 0.79

  Alignments for each domain:
  == domain 1  score: 57.0 bits;  conditional E-value: 6.3e-19
                 EEEESSCCSE----HHHHHHHHHHHHCCTCCCH...HHHHHHHCCC-.-CHHHCCTTEEECEETTTS-CCCHHHHCCS-CT-B-S-EEETTEEEEEEE CS
    Rotamase   1 HILlkvkekasekeraeakakaeeileqlksge...dtFeelArkySddknsakngGdlgwvekgqlppefekaafslkkGeisepvetkfGfhiikl 95 
                 HIL++ k+       a+ k+ ++++++   +++    +F elA+++S  ++s k+gG+lg +++g+++p+f+++ +s+  G + +pv+t+fGfh+i +
  KOO23634.1 187 HILMSDKN-----LCAKLKKDLDTLAAAGLNQQglfIKFGELAKEHS-TCPSSKSGGSLGVIAPGEMVPAFDEVCWSAPIGVVQGPVQTEFGFHLILV 278
                 66666555.....3444444555544443333335556*********.***********************************************987 PP

>> Rotamase_3  PPIC-type PPIASE domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.3   0.0   3.3e-17   1.5e-13      15     113 ..     182     279 ..     170     282 .. 0.82

  Alignments for each domain:
  == domain 1  score: 51.3 bits;  conditional E-value: 3.3e-17
  Rotamase_3  15 svkvshIlistkgkesrseeeakakadsllaalkegadFaalAkeySdDpaskenGGelgwftkgqmvkeFedavfslkkgeiskvvktdfGyHiikvt 113
                 ++++ hIl+s k+   + +++   +a   l++     +F +lAke S  p+ +++GG+lg++ +g+mv++F+++  s+++g + ++v+t+fG+H+i v+
  KOO23634.1 182 TAHACHILMSDKNLCAKLKKDLDTLAAAGLNQQGLFIKFGELAKEHSTCPS-SKSGGSLGVIAPGEMVPAFDEVCWSAPIGVVQGPVQTEFGFHLILVA 279
                 67899999998885555555555555444555555569**********997.899*****************************************886 PP

>> FKBP_N  Domain amino terminal to FKBP-type peptidyl-prolyl isomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.0   0.0   5.4e-08   0.00024      74      97 .]      17      40 ..      15      40 .. 0.95

  Alignments for each domain:
  == domain 1  score: 22.0 bits;  conditional E-value: 5.4e-08
      FKBP_N 74 eaFlaenkkkeGVkttesGLqYkV 97
                +a+l en+kk+ V++++sGLqY +
  KOO23634.1 17 DAWLRENAKKKSVVQLPSGLQYTI 40
                69********************87 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (299 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       425  (0.0237046); expected 358.6 (0.02)
Passed bias filter:                      361  (0.020135); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.43u 0.23s 00:00:00.66 Elapsed: 00:00:00.39
# Mc/sec: 2314.14
//
Query:       KOO23635.1  [L=321]
Description: fkbp-type peptidyl-prolyl cis-trans isomerase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    7.9e-17   61.4   0.0    1.4e-16   60.6   0.0    1.4  1  FKBP_C      FKBP-type peptidyl-prolyl cis-trans isomerase
    2.9e-15   56.8   0.0    4.1e-15   56.3   0.0    1.2  1  Rotamase_3  PPIC-type PPIASE domain
    2.5e-14   54.0   0.0    4.7e-14   53.1   0.0    1.4  1  Rotamase    PPIC-type PPIASE domain
    0.00027   21.8   0.0    0.00092   20.1   0.0    1.9  2  FKBP_N      Domain amino terminal to FKBP-type peptidyl-proly


Domain annotation for each model (and alignments):
>> FKBP_C  FKBP-type peptidyl-prolyl cis-trans isomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.6   0.0   3.1e-20   1.4e-16       5      94 .]      57     144 ..      54     144 .. 0.86

  Alignments for each domain:
  == domain 1  score: 60.6 bits;  conditional E-value: 3.1e-20
                 B-TTCEEEEEEEEEETTSSEEEEHCCHTSEEEEETTSSSSCHHHHHHHTTSBTT-EEEEEEEGGGTTTTTTBCTTTB.TTSEEEEEEEEE CS
      FKBP_C   5 akegdtVtvhykgkledgkvfdssrsrakplefkvGsgqvikGfeealegmkvGekrtltippelaYgekglaggvippnatLvFeveLl 94 
                 + +++++++h +  l+dg+vfds+r+++ p +++v  +  + G+ eal+ m+ G++++l+ip++laYg +g     ipp+atL+F+ eL+
  KOO23635.1  57 PMKDQQCKCHWTVALTDGTVFDSTREKGIP-QVVVPYNVPVAGWAEALQLMSPGDRWKLFIPSKLAYGPTGT-SDGIPPDATLIFDLELI 144
                 678899******************444444.34455555899******************************.668************97 PP

>> Rotamase_3  PPIC-type PPIASE domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.3   0.0   9.1e-19   4.1e-15       5     116 .]     176     286 ..     172     286 .. 0.89

  Alignments for each domain:
  == domain 1  score: 56.3 bits;  conditional E-value: 9.1e-19
  Rotamase_3   5 klvdkksakdsvkvshIlistkgkesrseeeakakadsllaalkegadFaalAkeySdDpaskenGGelgwftkgqmvkeFedavfslkkgeiskvvkt 103
                  +++  s  ++v++shIl++++    + ++e  ++a s l+    + +Fa+lA++ S  p+ +++GG+lg f +g++ ++F+++  s+++g + ++v+t
  KOO23635.1 176 YYYNGSSGRKMVSASHILVAEEAVCAMLKKELDNLAGSELSLETVQHKFAELAQQHSTCPS-SKKGGSLGSFGPGNNAPKFDEVCWSAPIGVVQGPVQT 273
                 56666777889********9988788888888888888877777999***********997.899********************************** PP

  Rotamase_3 104 dfGyHiikvtdkk 116
                   G+H+i vt++k
  KOO23635.1 274 GAGFHLILVTERK 286
                 *********9986 PP

>> Rotamase  PPIC-type PPIASE domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.1   0.0     1e-17   4.7e-14       1      96 [.     191     283 ..     191     284 .. 0.78

  Alignments for each domain:
  == domain 1  score: 53.1 bits;  conditional E-value: 1e-17
                 EEEESSCCSE----HHHHHHHHHHHHCCTCCCHHHHHHHHCCC-.-CHHHCCTTEEECEETTTS-CCCHHHHCCS-CT-B-S-EEETTEEEEEEEE CS
    Rotamase   1 HILlkvkekasekeraeakakaeeileqlksgedtFeelArkySddknsakngGdlgwvekgqlppefekaafslkkGeisepvetkfGfhiikle 96 
                 HIL++ +       ++e  + a + l+ l++ + +F+elA+++S  ++s k+gG+lg + +g+ +p+f+++ +s+  G + +pv+t +Gfh+i ++
  KOO23635.1 191 HILVAEEA-VCAMLKKELDNLAGSELS-LETVQHKFAELAQQHS-TCPSSKKGGSLGSFGPGNNAPKFDEVCWSAPIGVVQGPVQTGAGFHLILVT 283
                 56665555.333334444444444333.4444466*********.************************************************987 PP

>> FKBP_N  Domain amino terminal to FKBP-type peptidyl-prolyl isomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.1   0.0   2.1e-07   0.00092      73      97 .]      22      46 ..      16      46 .. 0.94
   2 ?   -2.3   0.0       2.1   9.4e+03      26      55 ..     197     225 ..     176     238 .. 0.47

  Alignments for each domain:
  == domain 1  score: 20.1 bits;  conditional E-value: 2.1e-07
      FKBP_N 73 geaFlaenkkkeGVkttesGLqYkV 97
                +ea+l en+++e V +++sG+qY+V
  KOO23635.1 22 EEAWLRENAARESVIQLASGVQYEV 46
                79**********************9 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 2.1
      FKBP_N  26 davlaGlkdalkgkskltde.eiqevlqalq 55 
                 +av a lk+ l++ +   +e ++++v  ++ 
  KOO23635.1 197 EAVCAMLKKELDNLAG--SElSLETVQHKFA 225
                 4444444444433111..2223333333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (321 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       496  (0.0276647); expected 358.6 (0.02)
Passed bias filter:                      436  (0.0243181); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.45u 0.24s 00:00:00.69 Elapsed: 00:00:00.40
# Mc/sec: 2391.34
//
Query:       KOO23636.1  [L=294]
Description: 2,5-diketo-D-gluconic acid reductase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    7.5e-40  137.0   0.0    1.3e-34  119.7   0.0    2.0  2  Aldo_ket_red  Aldo/keto reductase family
  ------ inclusion threshold ------
       0.13   11.7   0.0       0.16   11.3   0.0    1.1  1  Reo_P9        Reovirus P9-like family


Domain annotation for each model (and alignments):
>> Aldo_ket_red  Aldo/keto reductase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  119.7   0.0   1.5e-38   1.3e-34       2     196 ..      28     212 ..      27     215 .. 0.94
   2 !   15.4   0.0   8.7e-07    0.0078     235     292 ..     224     281 ..     218     283 .. 0.87

  Alignments for each domain:
  == domain 1  score: 119.7 bits;  conditional E-value: 1.5e-38
                   EEEE-SSS-ST.TS-HHHHHHHHHHHHHTT--EEE--TT-TTTHHHHHHHHHHHH-TTTGGG-EEEEEE--SSSTTSSSS-HHHHHHHHHHHHHHHT CS
  Aldo_ket_red   2 lglGtwqlgskeeiskeealellrraleaGinffDtAevYgkgqseellGealkksrkkreeviiatKvdlrdaeiksglskeniresleeslkrLg 98 
                   +  Gtwq+ +      ++a ++++ al+ G+n++D A+ Y    ++  +G  lk   ++r +++++tK+   d++++s+   +  ++  e sl +L+
    KOO23636.1  28 ISAGTWQYDG------PTAEQVVKLALSLGYNHIDAANDY---NNQVSVGAGLKG--VPRSSYFLTTKI---DSQQQSKTAYDATMKDMELSLTQLD 110
                   5679998887......7***********************...55555*******..************...999999******************* PP

                   -S-EEEEEE-S--TTS-.....HHHHHHHHHHHHHTTSEEEEEEES--HHHHHHHHHTTT--EEEEE-B-BTT-HHHHTTHHHHHHHTT-EEEEBST CS
  Aldo_ket_red  99 tdyvDllllHrpdpslp....sieevldaleelvkeGkiraiGvSnfsveqlekakkkkkvkivavqveynllreleeegllelckkkgvpliaysp 191
                   +dyvDl l+H p    +     + e+++a+e+++k+Gk+r+iGvSn+   + e ++k++ ++++++qve ++    ++ g++++ck kgv++ aysp
    KOO23636.1 111 LDYVDLMLIHFPPTGNDqycaAMQEQWRACEDFYKAGKARSIGVSNYCPSSFECILKTANITPAVNQVEIHVGMGPDPGGIISYCKGKGVQVQAYSP 207
                   ***********97777767779*******************************99******************99********************** PP

                   TGGGT CS
  Aldo_ket_red 192 lggGl 196
                   lg G+
    KOO23636.1 208 LGDGS 212
                   **996 PP

  == domain 2  score: 15.4 bits;  conditional E-value: 8.7e-07
                   HHHHTT--HHHHHHHHHTTSTT-SEEEE--SSHHHHHHHHGGG..G----HHHHHHHHHH CS
  Aldo_ket_red 235 lakehgvslaqlalryalsqpavgivipgasnieqlednldal..elklseeevaeldel 292
                   ++k ++++ aq++l +++  + ++ +  +++n++ l+dn +a+  ++kls++++a+ld++
    KOO23636.1 224 IGKAYNKTGAQVSLHWVY--QHGIPLSTKSTNPQYLTDNKNAVsdDWKLSAQDFATLDAA 281
                   67889999**********..5666666789*************8778**********985 PP

>> Reo_P9  Reovirus P9-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   1.8e-05      0.16     274     315 ..      52      93 ..       3     115 .. 0.77

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 1.8e-05
      Reo_P9 274 fkqidikpmlgntmsvgyslrgidnsslflapkhyrqvrsrd 315
                 +++id      n +svg  l+g+  ss fl+ k   q +s+ 
  KOO23636.1  52 YNHIDAANDYNNQVSVGAGLKGVPRSSYFLTTKIDSQQQSKT 93 
                 6789999999***********************988877764 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (294 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       454  (0.0253221); expected 358.6 (0.02)
Passed bias filter:                      370  (0.020637); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.45u 0.28s 00:00:00.73 Elapsed: 00:00:00.43
# Mc/sec: 2047.03
//
Query:       KOO23637.1  [L=109]
Description: calmodulin-like 5 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.3e-10   39.0   0.0    2.1e-05   23.8   0.0    2.3  2  EF-hand_5  EF hand
    5.5e-10   38.1   0.0    2.3e-06   26.8   0.0    2.3  2  EF-hand_1  EF hand
      2e-09   37.8   0.0    3.2e-09   37.1   0.0    1.3  1  EF-hand_7  EF-hand domain pair
    6.5e-09   35.5   0.0    7.9e-07   28.8   0.0    2.2  2  EF-hand_8  EF-hand domain pair
    1.6e-08   33.8   0.0    1.6e-06   27.6   0.0    2.6  2  EF-hand_6  EF-hand domain
    0.00074   19.8   0.0    0.00098   19.4   0.0    1.2  1  EF-hand_9  EF-hand domain


Domain annotation for each model (and alignments):
>> EF-hand_5  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.8   0.0   7.1e-09   2.1e-05       4      24 ..      57      78 ..      55      79 .. 0.88
   2 !   13.1   0.0   1.7e-05     0.051       2      16 ..      92     106 ..      91     106 .. 0.85

  Alignments for each domain:
  == domain 1  score: 23.8 bits;  conditional E-value: 7.1e-09
                HHHHH-SS-SSCE-HHHHHH.H CS
   EF-hand_5  4 tFqaiDlNgDGkIskeELkt.l 24
                +F+ +D +g+G+Is++ELk  l
  KOO23637.1 57 AFSVLDQDGSGTISASELKSaL 78
                5*****************9755 PP

  == domain 2  score: 13.1 bits;  conditional E-value: 1.7e-05
                 HHHHHHH-SS-SSCE CS
   EF-hand_5   2 kdtFqaiDlNgDGkI 16 
                 + + +++D+NgDG++
  KOO23637.1  92 QSLISQVDANGDGRV 106
                 66789********96 PP

>> EF-hand_1  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.8   0.0   7.6e-10   2.3e-06       4      28 ..      56      80 ..      55      81 .. 0.95
   2 !    9.2   0.0   0.00031      0.91       1      17 [.      90     106 ..      90     107 .. 0.91

  Alignments for each domain:
  == domain 1  score: 26.8 bits;  conditional E-value: 7.6e-10
                HHHHHHTTTSSSEEEHHHHHHHHHH CS
   EF-hand_1  4 eiFrefDkDgdGkIdfeEfkellkk 28
                e+F+++D+Dg+G+I+ +E+k++l+k
  KOO23637.1 56 EAFSVLDQDGSGTISASELKSALMK 80
                89********************987 PP

  == domain 2  score: 9.2 bits;  conditional E-value: 0.00031
                 HHHHHHHHHTTTSSSEE CS
   EF-hand_1   1 elkeiFrefDkDgdGkI 17 
                 e++ +++ +D +gdG++
  KOO23637.1  90 EIQSLISQVDANGDGRV 106
                 78999**********86 PP

>> EF-hand_7  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.1   0.0   1.1e-12   3.2e-09       6      61 ..      56     106 ..      53     108 .. 0.95

  Alignments for each domain:
  == domain 1  score: 37.1 bits;  conditional E-value: 1.1e-12
   EF-hand_7   6 eaFkelDtdgdgyldkeellrllrkifqgagegsklsdeelellfkefDtdkdGvi 61 
                 eaF  lD+dg+g ++ +el+++l k     g  s +s+ e++ l+  +D ++dG++
  KOO23637.1  56 EAFSVLDQDGSGTISASELKSALMK-----GGSSQVSEAEIQSLISQVDANGDGRV 106
                 68*******************9998.....************************98 PP

>> EF-hand_8  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.6   0.0   0.00013      0.38      31      49 ..      57      75 ..      55      78 .. 0.85
   2 !   28.8   0.0   2.6e-10   7.9e-07       2      43 ..      66     106 ..      65     107 .. 0.89

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00013
   EF-hand_8 31 lfrefDtdgdGkisfeEFc 49
                 f+ +D+dg+G+is  E  
  KOO23637.1 57 AFSVLDQDGSGTISASELK 75
                599***********98876 PP

  == domain 2  score: 28.8 bits;  conditional E-value: 2.6e-10
   EF-hand_8   2 kgkItreelrrilrilglkk..glseeevdilfrefDtdgdGki 43 
                 +g I+  el+++l   ++ +  ++se e+++l++ +D +gdG++
  KOO23637.1  66 SGTISASELKSAL---MKGGssQVSEAEIQSLISQVDANGDGRV 106
                 799********99...5455678*******************97 PP

>> EF-hand_6  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.6   0.0   5.3e-10   1.6e-06       4      31 .]      56      82 ..      54     102 .. 0.94
   2 ?    3.4   0.0     0.029        88       2      17 ..      91     106 ..      90     108 .. 0.81

  Alignments for each domain:
  == domain 1  score: 27.6 bits;  conditional E-value: 5.3e-10
   EF-hand_6  4 eaFklfDkdgdGkidaeElrkalrkalg 31
                eaF  +D+dg+G+i+a+El++al  ++g
  KOO23637.1 56 EAFSVLDQDGSGTISASELKSALM-KGG 82
                79*********************9.555 PP

  == domain 2  score: 3.4 bits;  conditional E-value: 0.029
   EF-hand_6   2 lreaFklfDkdgdGki 17 
                 ++++  + D +gdG +
  KOO23637.1  91 IQSLISQVDANGDGRV 106
                 66777889******86 PP

>> EF-hand_9  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.4   0.0   3.3e-07   0.00098       3      49 ..      57     103 ..      55     108 .. 0.93

  Alignments for each domain:
  == domain 1  score: 19.4 bits;  conditional E-value: 3.3e-07
   EF-hand_9   3 vFevcDtqktGrVpvsrlidyLravtaqdpeeseLeelakelDPdge 49 
                  F+v D +  G++  s+l++ L + ++ + +e+e+++l +++D +g 
  KOO23637.1  57 AFSVLDQDGSGTISASELKSALMKGGSSQVSEAEIQSLISQVDANGD 103
                 5******************************************9987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (109 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       402  (0.0224218); expected 358.6 (0.02)
Passed bias filter:                      331  (0.0184617); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.36u 0.25s 00:00:00.61 Elapsed: 00:00:00.40
# Mc/sec: 825.98
//
Query:       KOO23638.1  [L=493]
Description: peptidyl-prolyl cis-trans cyclophilin-type, partial [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    9.9e-07   28.3   4.4     0.0032   17.2   0.0    3.8  3  TPR_1     Tetratricopeptide repeat
    3.9e-06   26.6   7.8     0.0095   16.0   0.0    4.4  4  TPR_2     Tetratricopeptide repeat
    5.8e-06   26.9   9.5      0.052   14.2   0.0    4.9  4  TPR_16    Tetratricopeptide repeat
    0.00055   19.7   0.1     0.0014   18.4   0.1    1.8  1  PDZ_6     PDZ domain
     0.0015   19.2   3.5     0.0055   17.4   0.0    3.8  2  TPR_14    Tetratricopeptide repeat
     0.0016   18.5   0.1     0.0075   16.4   0.0    2.3  1  TPR_8     Tetratricopeptide repeat
     0.0052   17.3   0.8        0.2   12.2   0.1    5.5  6  TPR_19    Tetratricopeptide repeat
     0.0071   16.5   3.0      0.016   15.4   0.1    2.8  3  ANAPC3    Anaphase-promoting complex, cyclosome, subunit 3
     0.0082   16.4   0.0      0.039   14.3   0.0    2.0  2  PDZ_2     PDZ domain
  ------ inclusion threshold ------
      0.021   14.5   6.7      0.089   12.5   0.5    3.6  4  TPR_11    TPR repeat
       0.08   13.2   0.1       0.08   13.2   0.1    4.4  5  TPR_12    Tetratricopeptide repeat
       0.48   11.2   2.8         25    5.8   0.0    4.2  4  TPR_6     Tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> TPR_1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.2   0.7   0.00073       1.1       5      30 ..     278     303 ..     274     305 .. 0.84
   2 ?    0.5   0.0       0.4     6e+02       3      17 ..     342     356 ..     340     360 .. 0.81
   3 !   17.2   0.0   2.1e-06    0.0032       1      33 [.     392     424 ..     392     425 .. 0.97

  Alignments for each domain:
  == domain 1  score: 9.2 bits;  conditional E-value: 0.00073
                 HHHHHHHHHTT-HHHHHHHHHHHHHH CS
       TPR_1   5 ynlGnayfklgkydeAleyyekALel 30 
                 +  Gn  f+ gky++Al+ y+ AL l
  KOO23638.1 278 KDEGNDKFSEGKYQDALDEYQYALDL 303
                 556888899***************98 PP

  == domain 2  score: 0.5 bits;  conditional E-value: 0.4
                 HHHHHHHHHHHTT-H CS
       TPR_1   3 alynlGnayfklgky 17 
                 +l n +++++klg+ 
  KOO23638.1 342 CLLNSAACHLKLGNV 356
                 577889*******95 PP

  == domain 3  score: 17.2 bits;  conditional E-value: 2.1e-06
                 HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT CS
       TPR_1   1 akalynlGnayfklgkydeAleyyekALelnPn 33 
                 aka++++G+a+  lg++ eA ++  +A e+nP+
  KOO23638.1 392 AKAYFRMGQAHVGLGNPREAWAALVQAQEINPS 424
                 89******************************7 PP

>> TPR_2  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.7   0.8   0.00032      0.48       6      31 ..     279     304 ..     274     306 .. 0.85
   2 ?    0.5   0.0      0.56   8.3e+02       4      20 ..     343     359 ..     341     361 .. 0.81
   3 !   16.0   0.0   6.4e-06    0.0095       1      33 [.     392     424 ..     392     425 .. 0.96
   4 ?   -2.1   0.2       3.9   5.8e+03      18      28 ..     466     476 ..     465     479 .. 0.80

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00032
       TPR_2   6 nlGlayyklgdyeeAleafekAleld 31 
                   G+  +  g+y++Al+ ++ Al l 
  KOO23638.1 279 DEGNDKFSEGKYQDALDEYQYALDLF 304
                 567888999**************996 PP

  == domain 2  score: 0.5 bits;  conditional E-value: 0.56
       TPR_2   4 lynlGlayyklgdyeeA 20 
                 l n + +++klg+   A
  KOO23638.1 343 LLNSAACHLKLGNVSGA 359
                 567799*******9887 PP

  == domain 3  score: 16.0 bits;  conditional E-value: 6.4e-06
       TPR_2   1 aealynlGlayyklgdyeeAleafekAleldPn 33 
                 a+a++++G+a+  lg++ eA +a+ +A e++P 
  KOO23638.1 392 AKAYFRMGQAHVGLGNPREAWAALVQAQEINPS 424
                 79*****************************96 PP

  == domain 4  score: -2.1 bits;  conditional E-value: 3.9
       TPR_2  18 eeAleafekAl 28 
                 +eAl + +k  
  KOO23638.1 466 QEALTYAQKLA 476
                 79999999976 PP

>> TPR_16  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.6   1.5      0.15   2.3e+02       9      51 ..     236     272 ..     233     277 .. 0.85
   2 !   10.7   0.1   0.00042      0.62       2      28 ..     279     305 ..     278     311 .. 0.90
   3 ?   -0.7   0.0       1.6   2.3e+03      35      53 ..     341     359 ..     335     361 .. 0.83
   4 !   14.2   0.0   3.4e-05     0.052       2      54 ..     397     446 ..     396     449 .. 0.94

  Alignments for each domain:
  == domain 1  score: 2.6 bits;  conditional E-value: 0.15
      TPR_16   9 ragdyddAaaaleaalkrdpssPdaaeAllllgdaalrqgrla 51 
                 r  +y+ A+a    a+k++       +++ll +++ l++ rl 
  KOO23638.1 236 RESRYASARAEMSPATKQQ-----LQQMWLLQARSNLAH-RLS 272
                 6689***************.....88*********9998.444 PP

  == domain 2  score: 10.7 bits;  conditional E-value: 0.00042
      TPR_16   2 alaraalragdyddAaaaleaalkrdp 28 
                 +++++ +  g+y+dA+  ++ al++++
  KOO23638.1 279 DEGNDKFSEGKYQDALDEYQYALDLFK 305
                 57999999****************995 PP

  == domain 3  score: -0.7 bits;  conditional E-value: 1.6
      TPR_16  35 eAllllgdaalrqgrlaeA 53 
                   ll+++ ++l++g++ +A
  KOO23638.1 341 PCLLNSAACHLKLGNVSGA 359
                 5789999******999887 PP

  == domain 4  score: 14.2 bits;  conditional E-value: 3.4e-05
      TPR_16   2 alaraalragdyddAaaaleaalkrdpssPdaaeAllllgdaalrqgrlaeAa 54 
                  +++a++ +g++++A aal +a + +   P  +e + ll  + ++++ l++A+
  KOO23638.1 397 RMGQAHVGLGNPREAWAALVQAQEIN---PSSREIRELLIKVSYELKQLKAAE 446
                 5799**********************...99999******************8 PP

>> PDZ_6  PDZ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.4   0.1   9.6e-07    0.0014       1      49 [.     103     150 ..     103     158 .. 0.87

  Alignments for each domain:
  == domain 1  score: 18.4 bits;  conditional E-value: 9.6e-07
       PDZ_6   1 vVtaVdpgsPAdrAG.lrvGDiilsvNGqpveglsladvaallrgsages 49 
                 vV a  +gsPA++ G + v D++l+v G+ +       va+llr+ ++ +
  KOO23638.1 103 VVVALREGSPAAQSGeIFVSDTVLAVQGVAC--SAERRVAQLLRELPDAA 150
                 688999*************************..66669*****9776655 PP

>> TPR_14  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.4   0.1      0.25   3.7e+02      18      43 ..     372     400 ..     351     400 .. 0.78
   2 !   17.4   0.0   3.7e-06    0.0055       2      43 ..     393     434 ..     392     435 .. 0.94

  Alignments for each domain:
  == domain 1  score: 2.4 bits;  conditional E-value: 0.25
      TPR_14  18 deAiallrralalaP...ddaeawlllaq 43 
                  +A++++ ++l+++P   + a a+++++q
  KOO23638.1 372 TTALRCCAEVLQAGPpaaQRAKAYFRMGQ 400
                 57888999999988855444567777765 PP

  == domain 2  score: 17.4 bits;  conditional E-value: 3.7e-06
      TPR_14   2 eallalaeallalGdpdeAiallrralalaPddaeawlllaq 43 
                 +a+ ++++a+  lG+p+eA a+l +a + +P+++e++ ll +
  KOO23638.1 393 KAYFRMGQAHVGLGNPREAWAALVQAQEINPSSREIRELLIK 434
                 6999*********************************99976 PP

>> TPR_8  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   0.0     5e-06    0.0075       1      33 [.     392     424 ..     392     425 .. 0.96

  Alignments for each domain:
  == domain 1  score: 16.4 bits;  conditional E-value: 5e-06
                 CCHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH CS
       TPR_8   1 aeayynlgsiylklgdyeeAkeyyekaleldpd 33 
                 a+ay+++g+++  lg+  eA +++ +a e++p+
  KOO23638.1 392 AKAYFRMGQAHVGLGNPREAWAALVQAQEINPS 424
                 79*****************************96 PP

>> TPR_19  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.1       1.5   2.2e+03      44      62 ..     135     152 ..     134     155 .. 0.78
   2 ?    0.7   0.4       0.5   7.4e+02      39      67 ..     238     264 ..     232     264 .. 0.83
   3 ?    4.3   0.3      0.04        60       3      20 ..     286     303 ..     284     318 .. 0.86
   4 ?    1.1   0.0      0.37   5.6e+02      30      46 ..     345     361 ..     339     362 .. 0.85
   5 !   11.8   0.1   0.00018      0.26       7      67 ..     371     434 ..     368     435 .. 0.88
   6 !   12.2   0.1   0.00013       0.2       5      46 ..     406     447 ..     402     448 .. 0.95

  Alignments for each domain:
  == domain 1  score: -0.8 bits;  conditional E-value: 1.5
      TPR_19  44 AealLdalpeedpddarya 62 
                 Ae+ +++l++e pd a++ 
  KOO23638.1 135 AERRVAQLLRELPD-AAVY 152
                 88999999999999.5544 PP

  == domain 2  score: 0.7 bits;  conditional E-value: 0.5
      TPR_19  39 gqldeAealLdalpeedpddaryasLlAk 67 
                  +++ A+a ++++ +++ +  +++ L+A+
  KOO23638.1 238 SRYASARAEMSPATKQQLQ--QMWLLQAR 264
                 6889999999999999888..99999985 PP

  == domain 3  score: 4.3 bits;  conditional E-value: 0.04
      TPR_19   3 aegdyaeAlalleqalqe 20 
                  eg+y++Al+ +++al+ 
  KOO23638.1 286 SEGKYQDALDEYQYALDL 303
                 69*************986 PP

  == domain 4  score: 1.1 bits;  conditional E-value: 0.37
      TPR_19  30 lLAeallalgqldeAea 46 
                 + A ++l+lg++  A+a
  KOO23638.1 345 NSAACHLKLGNVSGAQA 361
                 5599********99986 PP

  == domain 5  score: 11.8 bits;  conditional E-value: 0.00018
      TPR_19   7 yaeAlalleqalqe...dpknaearllLAeallalgqldeAealLdalpeedpddaryasLlAk 67 
                 ++ Al+  +++lq+   +++ a a  ++ +a++ lg++ eA a+L +++e +p + +++ Ll k
  KOO23638.1 371 LTTALRCCAEVLQAgppAAQRAKAYFRMGQAHVGLGNPREAWAALVQAQEINPSSREIRELLIK 434
                 56788888889999777777999*******************************9999999866 PP

  == domain 6  score: 12.2 bits;  conditional E-value: 0.00013
      TPR_19   5 gdyaeAlalleqalqedpknaearllLAeallalgqldeAea 46 
                 g++ eA a+l qa + +p + e+r lL+++ ++l+ql++Ae+
  KOO23638.1 406 GNPREAWAALVQAQEINPSSREIRELLIKVSYELKQLKAAER 447
                 899*************************************96 PP

>> ANAPC3  Anaphase-promoting complex, cyclosome, subunit 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   0.1       1.1   1.6e+03      21      32 ..     291     302 ..     258     314 .. 0.69
   2 ?   -1.2   0.0       1.6   2.4e+03      58      73 ..     342     357 ..     336     361 .. 0.73
   3 !   15.4   0.1   1.1e-05     0.016       6      76 ..     372     446 ..     365     448 .. 0.83

  Alignments for each domain:
  == domain 1  score: -0.6 bits;  conditional E-value: 1.1
                 --HHHHHHHHHH CS
      ANAPC3  21 espedayllAlc 32 
                 +++ d y +Al 
  KOO23638.1 291 QDALDEYQYALD 302
                 333344444444 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 1.6
                 HHHHHHHHHHHTT-HH CS
      ANAPC3  58 crylfAqcllkLkkye 73 
                 c++  A c lkL+++ 
  KOO23638.1 342 CLLNSAACHLKLGNVS 357
                 6666688888888765 PP

  == domain 3  score: 15.4 bits;  conditional E-value: 1.1e-05
                 HHHHHHHHHHH....HHH--HHHHHHHHHHHHHTT-HHHHHHHHHCT.SHHHC-HHHHHHHHHHHHHTT-HHHHH CS
      ANAPC3   6 knAiflaerlla...aetespedayllAlclylngqykrAyellrka.klnskslgcrylfAqcllkLkkyeeAi 76 
                  +A+ ++  +l+     ++++++ +  ++++  +g+  +A   l +a ++n++s ++r l+ +++++Lk+++ A+
  KOO23638.1 372 TTALRCCAEVLQagpPAAQRAKAYFRMGQAHVGLGNPREAWAALVQAqEINPSSREIRELLIKVSYELKQLKAAE 446
                 556666666664233557777777778*******************************************99887 PP

>> PDZ_2  PDZ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.0       3.3   4.9e+03      62      76 ..      79      93 ..      60      97 .. 0.82
   2 !   14.3   0.0   2.6e-05     0.039      17      62 ..     103     148 ..      92     167 .. 0.74

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 3.3
                T-EEEEEEEETTEEE CS
       PDZ_2 62 GdtVkltvlRdgkkk 76
                ++ V+++++R+g+++
  KOO23638.1 79 DEIVEVRLFRKGDER 93
                667999999999875 PP

  == domain 2  score: 14.3 bits;  conditional E-value: 2.6e-05
                 EEEEE-TTSGGGGT..--TT-EEEEETTB--SSHHHHHHHHHTS-TT CS
       PDZ_2  17 lvvsVkeggPaakag.lkagDvilkvdgkkvksledlislllkkkpG 62 
                 +vv  +eg+Paa++g +   D++l+v g++ + ++ + +ll++  p+
  KOO23638.1 103 VVVALREGSPAAQSGeIFVSDTVLAVQGVACSAERRVAQLLREL-PD 148
                 7899**************************96655555555444.33 PP

>> TPR_11  TPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.5     6e-05     0.089       1      23 [.     281     303 ..     281     303 .. 0.95
   2 ?   -1.7   0.0       1.6   2.4e+03      27      37 ..     346     356 ..     345     360 .. 0.79
   3 ?    2.2   0.0       0.1   1.5e+02      28      42 .]     392     406 ..     389     406 .. 0.83
   4 ?    1.8   0.2      0.13     2e+02       1      31 [.     399     429 ..     399     438 .. 0.82

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 6e-05
      TPR_11   1 GdayyeqGkyeeAieaYkkAlkl 23 
                 G+  ++ Gky +A+ +Y+ Al+l
  KOO23638.1 281 GNDKFSEGKYQDALDEYQYALDL 303
                 8999****************987 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 1.6
      TPR_11  27 naeayynLGla 37 
                 +a  +++LG++
  KOO23638.1 346 SAACHLKLGNV 356
                 67789****98 PP

  == domain 3  score: 2.2 bits;  conditional E-value: 0.1
      TPR_11  28 aeayynLGlayykqG 42 
                 a ay+ +G+a+  +G
  KOO23638.1 392 AKAYFRMGQAHVGLG 406
                 789999999998877 PP

  == domain 4  score: 1.8 bits;  conditional E-value: 0.13
      TPR_11   1 GdayyeqGkyeeAieaYkkAlkldPdnaeay 31 
                 G+a + +G+  eA +a+ +A +++P++ e+ 
  KOO23638.1 399 GQAHVGLGNPREAWAALVQAQEINPSSREIR 429
                 56666677778999***********987775 PP

>> TPR_12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.8       1.6   2.3e+03      20      38 ..     185     203 ..     184     208 .. 0.80
   2 ?    8.3   0.6    0.0018       2.7      31      75 ..     262     304 ..     260     305 .. 0.84
   3 ?   -0.6   0.0       1.1   1.7e+03       4      22 ..     342     359 ..     339     361 .. 0.74
   4 ?   13.2   0.1   5.4e-05      0.08      22      74 ..     374     421 ..     367     424 .. 0.81
   5 ?   -1.8   0.1       2.7   4.1e+03      19      32 ..     465     478 ..     453     483 .. 0.64

  Alignments for each domain:
  == domain 1  score: -1.1 bits;  conditional E-value: 1.6
      TPR_12  20 deAlellekaleiarrllG 38 
                 +eA++l ++ le+++rl +
  KOO23638.1 185 EEAEALRDRELEARQRLRE 203
                 7999999999999999854 PP

  == domain 2  score: 8.3 bits;  conditional E-value: 0.0018
      TPR_12  31 eiarrllGpdhpltattlrnLgrlyralgryeeAlelleealaia 75 
                 +++++l   +++ +a+ l + g   +  g+y++Al+ ++ al+++
  KOO23638.1 262 QARSNL--AHRLSAAEMLKDEGNDKFSEGKYQDALDEYQYALDLF 304
                 445555..788999999*******99************9999987 PP

  == domain 3  score: -0.6 bits;  conditional E-value: 1.1
      TPR_12   4 talnnlaavlrrlgrydeA 22 
                 ++l n aa++++lg+   A
  KOO23638.1 342 CLL-NSAACHLKLGNVSGA 359
                 667.889999999987666 PP

  == domain 4  score: 13.2 bits;  conditional E-value: 5.4e-05
      TPR_12  22 AlellekaleiarrllGpdhpltattlrnLgrlyralgryeeAlelleealai 74 
                 Al+++ ++l++     Gp  ++ a +++ +g+++  lg+++eA+++l +a +i
  KOO23638.1 374 ALRCCAEVLQA-----GPPAAQRAKAYFRMGQAHVGLGNPREAWAALVQAQEI 421
                 44444444444.....488999*************************999887 PP

  == domain 5  score: -1.8 bits;  conditional E-value: 2.7
      TPR_12  19 ydeAlellekalei 32 
                  +eAl++ +k   +
  KOO23638.1 465 RQEALTYAQKLALL 478
                 47888888877655 PP

>> TPR_6  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.2   0.1       1.4   2.1e+03      13      25 ..     287     299 ..     259     304 .. 0.67
   2 ?    1.0   0.0      0.54   8.1e+02       2      20 ..     342     360 ..     341     362 .. 0.87
   3 ?    5.8   0.0     0.017        25       2      32 ..     394     424 ..     393     425 .. 0.81
   4 ?   -0.4   0.2       1.6   2.4e+03       3      26 ..     453     475 ..     451     477 .. 0.76

  Alignments for each domain:
  == domain 1  score: -0.2 bits;  conditional E-value: 1.4
                 HHHHHHHHHHHHH CS
       TPR_6  13 lgdtdkAlealer 25 
                  g++++Al+ ++ 
  KOO23638.1 287 EGKYQDALDEYQY 299
                 3799999998885 PP

  == domain 2  score: 1.0 bits;  conditional E-value: 0.54
                 HHHHHHHHHHHHHHHHHHH CS
       TPR_6   2 AlyklalsyrklgdtdkAl 20 
                 +l++ a +++klg+ + A 
  KOO23638.1 342 CLLNSAACHLKLGNVSGAQ 360
                 58999******99999886 PP

  == domain 3  score: 5.8 bits;  conditional E-value: 0.017
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHH-TT CS
       TPR_6   2 AlyklalsyrklgdtdkAlealerlikeYPd 32 
                 A++++++++  lg++++A +al +  +  P 
  KOO23638.1 394 AYFRMGQAHVGLGNPREAWAALVQAQEINPS 424
                 9**********99***997777666666665 PP

  == domain 4  score: -0.4 bits;  conditional E-value: 1.6
                 HHHHHHHHHHHHHHHHHHHHHHHH CS
       TPR_6   3 lyklalsyrklgdtdkAlealerl 26 
                 ++  a  +++l   ++Al++ ++l
  KOO23638.1 453 MMGTAINHQQL-LRQEALTYAQKL 475
                 55566677777.7899******98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (493 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       647  (0.0360868); expected 358.6 (0.02)
Passed bias filter:                      453  (0.0252663); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                        14  (0.000780858); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.52u 0.24s 00:00:00.76 Elapsed: 00:00:00.39
# Mc/sec: 3840.30
//
Query:       KOO23639.1  [L=570]
Description: hypothetical protein Ctob_006741, partial [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.4e-05   25.1   0.0    2.1e-05   24.5   0.0    1.2  1  Glyco_transf_25  Glycosyltransferase family 25 (LPS biosynthe


Domain annotation for each model (and alignments):
>> Glyco_transf_25  Glycosyltransferase family 25 (LPS biosynthesis protein)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.5   0.0   1.2e-09   2.1e-05      59      99 ..     177     217 ..     170     228 .. 0.91

  Alignments for each domain:
  == domain 1  score: 24.5 bits;  conditional E-value: 1.2e-09
  Glyco_transf_25  59 vgkeLtlgelGCylSHyllWekcvelnleyiiIlEDDvils 99 
                      ++++Lt ge+G +lS + +W+ ++e   e+++IlEDD+ + 
       KOO23639.1 177 ARRRLTPGEVGIVLSNVECWQHALEAGWEWTLILEDDAAVV 217
                      689**********************************9875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (570 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       239  (0.0133304); expected 358.6 (0.02)
Passed bias filter:                      174  (0.00970495); expected 358.6 (0.02)
Passed Vit filter:                         9  (0.00050198); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.23s 00:00:00.70 Elapsed: 00:00:00.38
# Mc/sec: 4502.97
//
Query:       KOO23640.1  [L=905]
Description: hypothetical protein Ctob_006740 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.2e-37  123.8   0.1    5.3e-05   22.8   0.0    6.5  6  EF-hand_6   EF-hand domain
    2.6e-36  120.5   0.5    3.1e-06   26.3   0.4    6.4  6  EF-hand_1   EF hand
    4.6e-33  111.3   5.9    1.8e-05   24.0   0.0    6.5  6  EF-hand_5   EF hand
    3.3e-30  104.3   0.4    1.1e-09   38.5   0.1    4.7  4  EF-hand_7   EF-hand domain pair
      3e-21   75.0   3.7    3.9e-08   33.0   0.2    6.0  6  EF-hand_8   EF-hand domain pair
    0.00062   19.8   0.0     0.0012   18.8   0.0    1.5  1  WW          WW domain
  ------ inclusion threshold ------
      0.011   16.5   0.0       0.12   13.3   0.0    2.6  3  EF-hand_11  EF-hand domain
      0.067   13.1   1.8        6.3    6.8   0.2    3.4  4  EF-hand_4   Cytoskeletal-regulatory complex EF hand
      0.069   13.0   0.2       0.22   11.4   0.2    1.9  1  IQ          IQ calmodulin-binding motif
        1.2    9.5   3.8         31    4.8   0.0    3.0  3  HrpJ        HrpJ-like domain


Domain annotation for each model (and alignments):
>> EF-hand_6  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.0   5.7e-06      0.01       2      26 ..       8      32 ..       7      34 .. 0.92
   2 !   22.8   0.0     3e-08   5.3e-05       2      28 ..      53      79 ..      52      88 .. 0.90
   3 !   19.4   0.0   3.7e-07   0.00066       5      30 ..     148     172 ..     144     173 .. 0.87
   4 !   16.0   0.0   4.5e-06    0.0081       4      27 ..     185     208 ..     183     214 .. 0.91
   5 !   18.4   0.0   7.7e-07    0.0014       3      23 ..     291     311 ..     289     318 .. 0.87
   6 !   22.5   0.1   3.8e-08   6.8e-05       2      28 ..     327     353 ..     326     361 .. 0.91

  Alignments for each domain:
  == domain 1  score: 15.7 bits;  conditional E-value: 5.7e-06
   EF-hand_6  2 lreaFklfDkdgdGkidaeElrkal 26
                + ++F+ +D + dG++++ E+++++
  KOO23640.1  8 IIDVFRSIDSNADGCVSRREFVSVI 32
                789******************9875 PP

  == domain 2  score: 22.8 bits;  conditional E-value: 3e-08
   EF-hand_6  2 lreaFklfDkdgdGkidaeElrkalrk 28
                + ++F+ fD+dg+Gki + El  alr+
  KOO23640.1 53 MLALFNSFDTDGSGKIEYRELYEALRR 79
                6789*********************95 PP

  == domain 3  score: 19.4 bits;  conditional E-value: 3.7e-07
   EF-hand_6   5 aFklfDkdgdGkidaeElrkalrkal 30 
                 + +l+D++gdGk++++E+r++l  +l
  KOO23640.1 148 LLRLLDRNGDGKLSRSEFRAVLP-LL 172
                 6689*****************97.66 PP

  == domain 4  score: 16.0 bits;  conditional E-value: 4.5e-06
   EF-hand_6   4 eaFklfDkdgdGkidaeElrkalr 27 
                 ++F+ +D d +G++daeEl  al 
  KOO23640.1 185 AVFDSLDLDSSGFLDAEELEIALG 208
                 79*****************99985 PP

  == domain 5  score: 18.4 bits;  conditional E-value: 7.7e-07
   EF-hand_6   3 reaFklfDkdgdGkidaeElr 23 
                  ++F+++D+d++G+i++eEl+
  KOO23640.1 291 LALFRAMDRDHSGCITREELM 311
                 689****************97 PP

  == domain 6  score: 22.5 bits;  conditional E-value: 3.8e-08
   EF-hand_6   2 lreaFklfDkdgdGkidaeElrkalrk 28 
                 ++++F+++D+d++Gki +eEl  al++
  KOO23640.1 327 FDAVFDEIDVDKNGKIEYEELLMALKR 353
                 789**********************95 PP

>> EF-hand_1  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.6   0.0     2e-05     0.036       2      25 ..       8      31 ..       7      33 .. 0.91
   2 !   21.5   0.0   5.9e-08   0.00011       5      28 ..      56      79 ..      53      80 .. 0.92
   3 !   19.2   0.0   3.4e-07   0.00061       6      26 ..     149     169 ..     145     172 .. 0.90
   4 !   13.3   0.1   2.5e-05     0.045       3      25 ..     184     206 ..     182     208 .. 0.89
   5 !   18.0   0.0   7.9e-07    0.0014       4      24 ..     292     312 ..     289     315 .. 0.89
   6 !   26.3   0.4   1.7e-09   3.1e-06       2      28 ..     327     353 ..     326     354 .. 0.94

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 2e-05
                HHHHHHHHTTTSSSEEEHHHHHHH CS
   EF-hand_1  2 lkeiFrefDkDgdGkIdfeEfkel 25
                + ++Fr +D + dG +++ Ef+++
  KOO23640.1  8 IIDVFRSIDSNADGCVSRREFVSV 31
                5689*****************987 PP

  == domain 2  score: 21.5 bits;  conditional E-value: 5.9e-08
                HHHHHTTTSSSEEEHHHHHHHHHH CS
   EF-hand_1  5 iFrefDkDgdGkIdfeEfkellkk 28
                +F+ fD+Dg+GkI++ E+ e+l++
  KOO23640.1 56 LFNSFDTDGSGKIEYRELYEALRR 79
                7********************987 PP

  == domain 3  score: 19.2 bits;  conditional E-value: 3.4e-07
                 HHHHTTTSSSEEEHHHHHHHH CS
   EF-hand_1   6 FrefDkDgdGkIdfeEfkell 26 
                  r++D++gdGk++++Ef+++l
  KOO23640.1 149 LRLLDRNGDGKLSRSEFRAVL 169
                 799***************987 PP

  == domain 4  score: 13.3 bits;  conditional E-value: 2.5e-05
                 HHHHHHHTTTSSSEEEHHHHHHH CS
   EF-hand_1   3 keiFrefDkDgdGkIdfeEfkel 25 
                 + +F+ +D D +G++d eE+  +
  KOO23640.1 184 DAVFDSLDLDSSGFLDAEELEIA 206
                 789****************9765 PP

  == domain 5  score: 18.0 bits;  conditional E-value: 7.9e-07
                 HHHHHHTTTSSSEEEHHHHHH CS
   EF-hand_1   4 eiFrefDkDgdGkIdfeEfke 24 
                  +Fr +D+D++G I++eE++ 
  KOO23640.1 292 ALFRAMDRDHSGCITREELMV 312
                 68****************985 PP

  == domain 6  score: 26.3 bits;  conditional E-value: 1.7e-09
                 HHHHHHHHTTTSSSEEEHHHHHHHHHH CS
   EF-hand_1   2 lkeiFrefDkDgdGkIdfeEfkellkk 28 
                 ++ +F+e+D+D++GkI++eE++ +lk+
  KOO23640.1 327 FDAVFDEIDVDKNGKIEYEELLMALKR 353
                 799*********************996 PP

>> EF-hand_5  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.2   0.0   2.6e-05     0.047       1      23 [.       8      30 ..       8      32 .. 0.90
   2 !   19.5   0.0   2.7e-07   0.00049       3      23 ..      55      75 ..      53      77 .. 0.91
   3 !   24.0   0.0     1e-08   1.8e-05       3      24 ..     147     168 ..     146     169 .. 0.90
   4 !   15.8   0.2   3.9e-06     0.007       2      22 ..     184     204 ..     182     207 .. 0.91
   5 !   16.2   0.0     3e-06    0.0053       3      22 ..     292     311 ..     290     314 .. 0.91
   6 !   19.2   0.4   3.2e-07   0.00058       2      22 ..     328     348 ..     327     352 .. 0.89

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 2.6e-05
                HHHHHHHH-SS-SSCE-HHHHHH CS
   EF-hand_5  1 lkdtFqaiDlNgDGkIskeELkt 23
                + d+F+ iD N DG +s+ E+  
  KOO23640.1  8 IIDVFRSIDSNADGCVSRREFVS 30
                579*****************965 PP

  == domain 2  score: 19.5 bits;  conditional E-value: 2.7e-07
                HHHHHH-SS-SSCE-HHHHHH CS
   EF-hand_5  3 dtFqaiDlNgDGkIskeELkt 23
                ++F+ +D++g+GkI   EL++
  KOO23640.1 55 ALFNSFDTDGSGKIEYRELYE 75
                68*****************97 PP

  == domain 3  score: 24.0 bits;  conditional E-value: 1e-08
                 HHHHHH-SS-SSCE-HHHHHHH CS
   EF-hand_5   3 dtFqaiDlNgDGkIskeELktl 24 
                 ++++ +D NgDGk+s++E++++
  KOO23640.1 147 ALLRLLDRNGDGKLSRSEFRAV 168
                 67899***************97 PP

  == domain 4  score: 15.8 bits;  conditional E-value: 3.9e-06
                 HHHHHHH-SS-SSCE-HHHHH CS
   EF-hand_5   2 kdtFqaiDlNgDGkIskeELk 22 
                 +++F+ +Dl+ +G++++eEL+
  KOO23640.1 184 DAVFDSLDLDSSGFLDAEELE 204
                 469****************96 PP

  == domain 5  score: 16.2 bits;  conditional E-value: 3e-06
                 HHHHHH-SS-SSCE-HHHHH CS
   EF-hand_5   3 dtFqaiDlNgDGkIskeELk 22 
                 ++F+a+D +++G I++eEL+
  KOO23640.1 292 ALFRAMDRDHSGCITREELM 311
                 68****************96 PP

  == domain 6  score: 19.2 bits;  conditional E-value: 3.2e-07
                 HHHHHHH-SS-SSCE-HHHHH CS
   EF-hand_5   2 kdtFqaiDlNgDGkIskeELk 22 
                 +++F++iD+++ GkI  eEL 
  KOO23640.1 328 DAVFDEIDVDKNGKIEYEELL 348
                 789****************94 PP

>> EF-hand_7  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.9   0.0   8.5e-12   1.5e-08       3      70 ..       7      77 ..       5      78 .. 0.93
   2 !   31.7   0.0   8.8e-11   1.6e-07       6      68 ..      55     167 ..      49     170 .. 0.85
   3 !   11.6   0.0   0.00017       0.3       6      26 ..     185     205 ..     180     223 .. 0.87
   4 !   38.5   0.1   6.4e-13   1.1e-09       4      67 ..     290     348 ..     287     352 .. 0.87

  Alignments for each domain:
  == domain 1  score: 34.9 bits;  conditional E-value: 8.5e-12
   EF-hand_7  3 klkeaFkelDtdgdgyldkeellrllrkifqga...gegsklsdeelellfkefDtdkdGvisfdEFlkly 70
                ++ ++F+++D++ dg ++++e+ +++ + f  a   + g +l++  + +lf+ fDtd++G+i + E++++ 
  KOO23640.1  7 RIIDVFRSIDSNADGCVSRREFVSVIPIVFGEAwaaHVGLPLDEATMLALFNSFDTDGSGKIEYRELYEAL 77
                7889*******************9998888777999*******************************9986 PP

  == domain 2  score: 31.7 bits;  conditional E-value: 8.8e-11
   EF-hand_7   6 eaFkelDtdgdgyldkeellrllrkifqga................................................gegsklsdee..lellfkefD 54 
                   F+++Dtdg+g+++++el ++lr+ +                                                   + +  l + +    +l++ +D
  KOO23640.1  55 ALFNSFDTDGSGKIEYRELYEALRRVDGPEiaklrpgaagaielhsrnrialrssarrdpasrvgnangalkkecnvaELTAALARGSarAVALLRLLD 153
                 45****************999**9987666*************************999999999999999988888885555555544235599***** PP

   EF-hand_7  55 tdkdGvisfdEFlk 68 
                  ++dG++s++EF++
  KOO23640.1 154 RNGDGKLSRSEFRA 167
                 ************97 PP

  == domain 3  score: 11.6 bits;  conditional E-value: 0.00017
   EF-hand_7   6 eaFkelDtdgdgyldkeellr 26 
                  +F++lD d +g+ld eel+ 
  KOO23640.1 185 AVFDSLDLDSSGFLDAEELEI 205
                 46****************985 PP

  == domain 4  score: 38.5 bits;  conditional E-value: 6.4e-13
   EF-hand_7   4 lkeaFkelDtdgdgyldkeellrllrkifqgagegsklsdeelellfkefDtdkdGvisfdEFl 67 
                 +   F+++D+d++g +++eel+ +   ++   g + +  +e+ +++f+e+D dk+G+i ++E+l
  KOO23640.1 290 ILALFRAMDRDHSGCITREELM-VTLPLI---GLNGD-NKEAFDAVFDEIDVDKNGKIEYEELL 348
                 5668******************.777777...77777.6789********************87 PP

>> EF-hand_8  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.0   0.0     0.051        92      31      50 ..      11      30 ..       7      32 .. 0.90
   2 !   16.5   0.0   3.1e-06    0.0055      17      53 ..      44      78 ..      36      79 .. 0.86
   3 !   14.7   0.0   1.2e-05     0.021      30      51 ..     147     168 ..     141     170 .. 0.90
   4 ?    0.2   0.1      0.39   7.1e+02      28      47 ..     183     202 ..     181     203 .. 0.88
   5 !   14.3   0.1   1.6e-05     0.028      26      50 ..     288     312 ..     273     314 .. 0.86
   6 !   33.0   0.2   2.2e-11   3.9e-08       1      54 [.     301     353 ..     301     354 .. 0.90

  Alignments for each domain:
  == domain 1  score: 3.0 bits;  conditional E-value: 0.051
   EF-hand_8 31 lfrefDtdgdGkisfeEFcv 50
                +fr +D + dG +s  EF+ 
  KOO23640.1 11 VFRSIDSNADGCVSRREFVS 30
                7999**************86 PP

  == domain 2  score: 16.5 bits;  conditional E-value: 3.1e-06
   EF-hand_8 17 lglkkglseeevdilfrefDtdgdGkisfeEFcvlle 53
                +gl+  l e  + +lf+ fDtdg+Gki + E ++ l 
  KOO23640.1 44 VGLP--LDEATMLALFNSFDTDGSGKIEYRELYEALR 78
                6888..88999999*****************998775 PP

  == domain 3  score: 14.7 bits;  conditional E-value: 1.2e-05
   EF-hand_8  30 ilfrefDtdgdGkisfeEFcvl 51 
                 +l+r++D++gdGk+s  EF ++
  KOO23640.1 147 ALLRLLDRNGDGKLSRSEFRAV 168
                 79*****************875 PP

  == domain 4  score: 0.2 bits;  conditional E-value: 0.39
   EF-hand_8  28 vdilfrefDtdgdGkisfeE 47 
                 +d++f+ +D+d +G ++ eE
  KOO23640.1 183 ADAVFDSLDLDSSGFLDAEE 202
                 6899**********999887 PP

  == domain 5  score: 14.3 bits;  conditional E-value: 1.6e-05
   EF-hand_8  26 eevdilfrefDtdgdGkisfeEFcv 50 
                 +++ +lfr++D+d++G i+ eE +v
  KOO23640.1 288 SNILALFRAMDRDHSGCITREELMV 312
                 56668*****************998 PP

  == domain 6  score: 33.0 bits;  conditional E-value: 2.2e-11
   EF-hand_8   1 ekgkItreelrrilrilglkkglseeevdilfrefDtdgdGkisfeEFcvller 54 
                 ++g+Itreel+ +l ++gl+ g ++e++d++f+e+D d++Gki +eE +  l+r
  KOO23640.1 301 HSGCITREELMVTLPLIGLN-GDNKEAFDAVFDEIDVDKNGKIEYEELLMALKR 353
                 68************999***.478888********************9877776 PP

>> WW  WW domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.8   0.0   6.9e-07    0.0012       1      27 [.     477     507 ..     477     511 .. 0.95

  Alignments for each domain:
  == domain 1  score: 18.8 bits;  conditional E-value: 6.9e-07
                 X-TTEEEEE-TTT....T-EEEEETTT--EE CS
          WW   1 LPpGWeeqwdpds....GrvYYyNheTgetq 27 
                 LP GWe+++ p+      r++Y++h+T++tq
  KOO23640.1 477 LPIGWEQRVEPPAkggsRRIFYIDHFTRTTQ 507
                 799***************************9 PP

>> EF-hand_11  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.0       1.8   3.3e+03      22      46 ..       8      32 ..       4      83 .. 0.74
   2 ?   -3.3   0.0       9.7   1.7e+04      36      45 ..     159     168 ..     152     189 .. 0.83
   3 ?   13.3   0.0   6.7e-05      0.12       7      83 ..     275     352 ..     269     368 .. 0.82

  Alignments for each domain:
  == domain 1  score: -1.0 bits;  conditional E-value: 1.8
                HHHHHHHH-TT-SSEE-HHHHHHHH CS
  EF-hand_11 22 ivqefenfdtlksntvsreefraic 46
                i++ f  +d+     vsr ef ++ 
  KOO23640.1  8 IIDVFRSIDSNADGCVSRREFVSVI 32
                6667777777777888888888764 PP

  == domain 2  score: -3.3 bits;  conditional E-value: 9.7
                 EE-HHHHHHH CS
  EF-hand_11  36 tvsreefrai 45 
                  +sr efra+
  KOO23640.1 159 KLSRSEFRAV 168
                 5799999997 PP

  == domain 3  score: 13.3 bits;  conditional E-value: 6.7e-05
                 HHHHHHHHHHHSHHHHHHHHHHH-TT-SSEE-HHHHHHHH.HHHT----HHHHHHHHHTS-B-TTS-EEHHHHHHHHC CS
  EF-hand_11   7 ilarlqkavashyhaivqefenfdtlksntvsreefraic.trrvqiltdeqfdrlwselpvnakgrlkyqdflskls 83 
                 +++ ++ka+      i   f  +d  +s  ++ree+        ++    e fd +++e+ v+ +g++ y+++l  l 
  KOO23640.1 275 MVSDIKKALRENSSNILALFRAMDRDHSGCITREELMVTLpLIGLNGDNKEAFDAVFDEIDVDKNGKIEYEELLMALK 352
                 688999*****************************86433034444555689********************998775 PP

>> EF-hand_4  Cytoskeletal-regulatory complex EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.0       4.1   7.4e+03      47      73 ..      10      36 ..       4      39 .. 0.75
   2 ?    3.2   0.0     0.046        83      37      69 ..     175     207 ..     149     211 .. 0.73
   3 ?   -0.6   0.0      0.72   1.3e+03      30      72 ..     275     317 ..     261     326 .. 0.80
   4 ?    6.8   0.2    0.0035       6.3      42      70 ..     324     352 ..     292     363 .. 0.83

  Alignments for each domain:
  == domain 1  score: -3.1 bits;  conditional E-value: 4.1
   EF-hand_4 47 kiwdladidedgkldfeefciamrlif 73
                 ++   d + dg++   ef+ ++ ++f
  KOO23640.1 10 DVFRSIDSNADGCVSRREFVSVIPIVF 36
                455556778899999999999988888 PP

  == domain 2  score: 3.2 bits;  conditional E-value: 0.046
   EF-hand_4  37 nskleedklekiwdladidedgkldfeefciam 69 
                 +s+   +  + ++d  d+d+ g ld ee+ ia+
  KOO23640.1 175 DSRKCGKVADAVFDSLDLDSSGFLDAEELEIAL 207
                 4555556667899999************99985 PP

  == domain 3  score: -0.6 bits;  conditional E-value: 0.72
   EF-hand_4  30 kvapvlknskleedklekiwdladidedgkldfeefciamrli 72 
                  v+ + k  + +++++  ++   d d+ g++  ee+++++ li
  KOO23640.1 275 MVSDIKKALRENSSNILALFRAMDRDHSGCITREELMVTLPLI 317
                 5666777777778888889999999*************99887 PP

  == domain 4  score: 6.8 bits;  conditional E-value: 0.0035
   EF-hand_4  42 edklekiwdladidedgkldfeefciamr 70 
                 ++ ++ ++d  d+d++gk+++ee+ +a++
  KOO23640.1 324 KEAFDAVFDEIDVDKNGKIEYEELLMALK 352
                 56678999****************99987 PP

>> IQ  IQ calmodulin-binding motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.2   0.00012      0.22       1      18 [.     354     371 ..     354     373 .. 0.93

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00012
                 HHHHHHHHHHHHHHHHHH CS
          IQ   1 rkaaikIQaawRGylaRk 18 
                 r+a++ +Q+ +RG +aR+
  KOO23640.1 354 RDAVVALQSTYRGAKARR 371
                 68***************9 PP

>> HrpJ  HrpJ-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.4   0.2     0.023        41      15      81 ..     229     305 ..     227     306 .. 0.82
   2 ?    4.8   0.0     0.017        31      54     108 ..     507     561 ..     505     576 .. 0.86
   3 ?   -3.3   0.1       5.4   9.6e+03      64     102 ..     687     723 ..     678     729 .. 0.55

  Alignments for each domain:
  == domain 1  score: 4.4 bits;  conditional E-value: 0.023
                 XXXX.XXXXXXXXXXXXXXXXHHHHHHCT-TT-.........HHHHHHHHS-TT..--HHHHHHHHHHH--SHHHHH CS
        HrpJ  15 qrkr.sdakkseaekleelldllekvldleaee.........klkeLrkllksgqlsssaqllalleslfgDpsdql 81 
                 +r++ ++++ +++++++e+  l++++++ e++e         k  ++ + +k++ +++s+ +lal+++++ D s ++
  KOO23640.1 229 KRRNwNEERVRRQAEKKERGILWQAPPTPEEKEkkvlkaadtKTMMMVSDIKKALRENSSNILALFRAMDRDHSGCI 305
                 4555677888888888888888888888888888888888779999999999999*****************99886 PP

  == domain 2  score: 4.8 bits;  conditional E-value: 0.017
                 HS-TT..--HHHHHHHHHHH--SHHHHHHHHHHHHHH.S-GGGHHHHHHHHHHHHH CS
        HrpJ  54 llksgqlsssaqllalleslfgDpsdqllaLrallrk.grplsaelkelleqalee 108
                 +l++  ++s++ + + ++++++Dp +++l+L++ + + ++   a+ +++l++al +
  KOO23640.1 507 QLADP-RTSADAVIEAVDEAGEDPLNEFLLLSSGVLSeQHVGPADYRAALNRALRH 561
                 56664.8899999999***************9988888999999999999999964 PP

  == domain 3  score: -3.3 bits;  conditional E-value: 5.4
                 HHHHHHHHHH--SHHHHHHHHHHHHHHS-GGGHHHHHHH CS
        HrpJ  64 aqllalleslfgDpsdqllaLrallrkgrplsaelkell 102
                 ++l+ l ++  +  s + +aL all +   +s+e +e++
  KOO23640.1 687 TSLHPLTQAPEPLSSSLEIALHALLTD--VSSREARERA 723
                 555555555555566666777666665..4444444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (905 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       438  (0.0244297); expected 358.6 (0.02)
Passed bias filter:                      340  (0.0189637); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.65u 0.28s 00:00:00.93 Elapsed: 00:00:00.43
# Mc/sec: 6309.58
//
Query:       KOO23641.1  [L=195]
Description: hypothetical protein Ctob_006748, partial [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    7.9e-07   29.1   0.0    1.1e-06   28.6   0.0    1.3  1  3HCDH_N   3-hydroxyacyl-CoA dehydrogenase, NAD binding domain


Domain annotation for each model (and alignments):
>> 3HCDH_N  3-hydroxyacyl-CoA dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.6   0.0   6.3e-11   1.1e-06      87     174 ..       3      99 ..       1     105 [. 0.89

  Alignments for each domain:
  == domain 1  score: 28.6 bits;  conditional E-value: 6.3e-11
                 -SSHHHHHHHHHHHHCCS-T......TSEEEE--SSS-HHHHCCCSSSGGG...EEEEEE-SSTTT--EEEEEE-TT--HHHHHHHHHHHHHTT-EE CS
     3HCDH_N  87 vEnlelKrkvfaelekiakp......dailasnTSslsiselaealkrper...viglHFfnPpplmkLvEvvrgekTseetvatvvelakkigktp 174
                 +E+l+lK+++f+++ +i+k+      ++ l+s T +++i ++  +++++e    ++gl F+ P+  +  vEv++ ++T+ +t +++ + +k+++ +p
  KOO23641.1   3 AEDLALKQALFNQMCNILKQlgrspgQVTLCSGTLTVPIGDIVGDIQTQEYrgsCLGLRFLYPVWFIDDVEVINCDHTKRSTRENLEKKLKALDFQP 99 
                 79**************9976555555899*****************99987788****************************999999888876655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (195 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       848  (0.0472977); expected 358.6 (0.02)
Passed bias filter:                      547  (0.0305092); expected 358.6 (0.02)
Passed Vit filter:                        47  (0.00262145); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.25s 00:00:00.67 Elapsed: 00:00:00.41
# Mc/sec: 1426.44
//
Query:       KOO23642.1  [L=127]
Description: hypothetical protein Ctob_006738 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (127 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       353  (0.0196888); expected 358.6 (0.02)
Passed bias filter:                      266  (0.0148363); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.26s 00:00:00.63 Elapsed: 00:00:00.42
# Mc/sec: 910.74
//
Query:       KOO23643.1  [L=450]
Description: hypothetical protein Ctob_006739 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
  ------ inclusion threshold ------
      0.064   12.3   0.4       0.12   11.5   0.4    1.3  1  SQHop_cyclase_N  Squalene-hopene cyclase N-terminal domain
      0.092   13.3   1.8          9    6.8   0.1    3.1  3  FlgN             FlgN protein


Domain annotation for each model (and alignments):
>> SQHop_cyclase_N  Squalene-hopene cyclase N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.4   1.3e-05      0.12     155     237 ..     310     392 ..     293     396 .. 0.77

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 1.3e-05
  SQHop_cyclase_N 155 waRttivPllilsakkpvaklprevdldELfveppeevkyelrkekkalswtklflaldkvlklle.rlplkplrkrAlrkaee 237
                       aR+++v+ l++ ++  v++++ +  l+E +  +++ ++   ++e+   ++ ++f  +d++l+ +    p++p+r+ A + ae+
       KOO23643.1 310 RARAVLVGWLLV-HTGLVREAQVRLCLEEVWRAADSLARAISEHEQFNGQSAQVFMFADRLLRSAPqAAPVRPTRRSASAVAER 392
                      388888887765.67899999999*******88666666554444447888*************98577999*****9988875 PP

>> FlgN  FlgN protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.9   0.0     0.033     3e+02      75     120 ..     138     184 ..     111     189 .. 0.75
   2 ?    6.8   0.1     0.001         9      53     116 ..     304     362 ..     299     372 .. 0.72
   3 ?    2.2   0.1     0.027   2.4e+02      84     124 ..     388     428 ..     365     431 .. 0.78

  Alignments for each domain:
  == domain 1  score: 1.9 bits;  conditional E-value: 0.033
                 HHHHHHHCT.TCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH CS
        FlgN  75 atlsellak.eedeelkelwqelkelleelkelnelNgrlieqslef 120
                 a+l ++ a  +++ + ++ w+  ++ l+e+ el    ++l +++le+
  KOO23643.1 138 ASLAPMTAPsSAERRSRQRWSLARTKLHEIAELRHEIAELSRRRLER 184
                 45555555567888889999999999998888888888888888764 PP

  == domain 2  score: 6.8 bits;  conditional E-value: 0.001
                 HHHHHHHHHHHHHHHTT--SCHHHHHHHHCT.TCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
        FlgN  53 kleqleqkrakllaelglsaeeatlsellak.eedeelkelwqelkelleelkelnelNgrlieq 116
                  l++le++ra l+  l         + l+++ + +  l+e+w++ ++l++++ e  + Ng+  + 
  KOO23643.1 304 SLAKLERARAVLVGWLLVH------TGLVREaQVRLCLEEVWRAADSLARAISEHEQFNGQSAQV 362
                 5666666666665555555......22333224666799*********************98775 PP

  == domain 3  score: 2.2 bits;  conditional E-value: 0.027
                 TCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHH CS
        FlgN  84 eedeelkelwqelkelleelkelnelNgrlieqslefnqrl 124
                 + +e++++l++e  + ++   ++ elN+ li q+++ ++r+
  KOO23643.1 388 AVAERCAALCDEALSWVHSRPDVQELNNCLITQQQRAFSRA 428
                 346899999999999*******************9988775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (450 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       471  (0.0262703); expected 358.6 (0.02)
Passed bias filter:                      307  (0.0171231); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.52u 0.30s 00:00:00.82 Elapsed: 00:00:00.48
# Mc/sec: 2810.81
//
Query:       KOO23644.1  [L=445]
Description: leucine rich repeat family protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (445 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       446  (0.0248759); expected 358.6 (0.02)
Passed bias filter:                      371  (0.0206927); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.51u 0.22s 00:00:00.73 Elapsed: 00:00:00.40
# Mc/sec: 3331.01
//
Query:       KOO23645.1  [L=694]
Description: calcium-binding allergen ole e 8-like protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.5e-11   44.6   1.1    2.5e-10   40.7   0.4    3.1  3  EF-hand_7       EF-hand domain pair
      4e-11   41.6   1.3    7.1e-06   25.2   0.8    2.8  2  EF-hand_1       EF hand
    8.3e-08   31.4   0.6      0.011   15.3   0.0    2.8  2  EF-hand_5       EF hand
    1.7e-07   30.9   1.0    1.1e-06   28.4   0.2    2.4  2  EF-hand_8       EF-hand domain pair
    2.6e-07   30.0   0.1      0.017   15.0   0.0    2.9  2  EF-hand_6       EF-hand domain
  ------ inclusion threshold ------
      0.024   14.6   0.1      0.063   13.2   0.1    1.7  1  EF-hand_4       Cytoskeletal-regulatory complex EF hand
      0.034   14.5   0.1       0.13   12.6   0.1    2.1  2  EF-hand_9       EF-hand domain
      0.042   13.8   9.2      0.064   13.2   9.2    1.2  1  TFIIA           Transcription factor IIA, alpha/beta subunit
       0.12   12.7   0.0       0.12   12.7   0.0    2.5  1  SPARC_Ca_bdg    Secreted protein acidic and rich in cysteine 
       0.18   10.3  24.0       0.34    9.3  24.0    1.4  1  Borrelia_P83    Borrelia P83/100 protein
       0.76    8.5   7.7        1.2    7.9   7.7    1.2  1  Presenilin      Presenilin
          3    5.6   9.1        4.3    5.1   9.1    1.2  1  V_ATPase_I      V-type ATPase 116kDa subunit family
        3.6    6.0   7.0        5.6    5.3   7.0    1.2  1  Peptidase_S64   Peptidase family S64


Domain annotation for each model (and alignments):
>> EF-hand_7  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.7   0.4   1.8e-13   2.5e-10       4      70 ..       9      69 ..       5      70 .. 0.93
   2 ?   -1.5   0.0       2.5   3.5e+03      23      53 ..     533     568 ..     531     571 .. 0.68
   3 ?    0.2   0.0      0.79   1.1e+03       6      55 ..     571     619 ..     566     654 .. 0.81

  Alignments for each domain:
  == domain 1  score: 40.7 bits;  conditional E-value: 1.8e-13
   EF-hand_7  4 lkeaFkelDtdgdgyldkeellrllrkifqgagegsklsdeelellfkefDtdkdGvisfdEFlkly 70
                l+ +F+++D + +g+++ +e+  +l+      + + k+++ee+ +++ + D d+dG+i+f+EF++ +
  KOO23645.1  9 LRLVFDKFDANASGRVSTAEMSAMLT------EIDAKKTPEEIAKMMSDADRDDDGEINFEEFVAVV 69
                6667******************9999......99*****************************9876 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 2.5
   EF-hand_7  23 ellrllrkifqga...gegsklsdee..lellfkef 53 
                 ++l++ + i++g    + + ++++e+   e++ + f
  KOO23645.1 533 DVLSVATEIIDGLahaELAINPDEEQaeAEYWARLF 568
                 666788888888888866666666444488998875 PP

  == domain 3  score: 0.2 bits;  conditional E-value: 0.79
   EF-hand_7   6 eaFkelDtdgdgyldkeellrllrkifqgagegsklsdeelellfkefDt 55 
                 + F   D d + ++++e l ++  +  +g g  + l+ +++ + + +fD+
  KOO23645.1 571 RLFPIVDADMRAMVNVEKLAEIKSWTGTG-GLRNALDAHAILKALSDFDL 619
                 459999************99987777777.66666666667777666665 PP

>> EF-hand_1  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.1   0.0   1.8e-05     0.024       3      28 ..      10      35 ..       8      36 .. 0.90
   2 !   25.2   0.8   5.2e-09   7.1e-06       1      28 [.      44      71 ..      44      72 .. 0.93

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 1.8e-05
                HHHHHHHTTTSSSEEEHHHHHHHHHH CS
   EF-hand_1  3 keiFrefDkDgdGkIdfeEfkellkk 28
                + +F++fD + +G+++  E+ ++l++
  KOO23645.1 10 RLVFDKFDANASGRVSTAEMSAMLTE 35
                668********************986 PP

  == domain 2  score: 25.2 bits;  conditional E-value: 5.2e-09
                HHHHHHHHHTTTSSSEEEHHHHHHHHHH CS
   EF-hand_1  1 elkeiFrefDkDgdGkIdfeEfkellkk 28
                e+ ++++++D+D dG I+feEf+++++k
  KOO23645.1 44 EIAKMMSDADRDDDGEINFEEFVAVVQK 71
                6889********************9987 PP

>> EF-hand_5  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.0   7.6e-06     0.011       2      24 ..      10      32 ..       9      33 .. 0.87
   2 !   13.3   0.4   3.3e-05     0.045       3      24 ..      47      68 ..      45      69 .. 0.84

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 7.6e-06
                HHHHHHH-SS-SSCE-HHHHHHH CS
   EF-hand_5  2 kdtFqaiDlNgDGkIskeELktl 24
                + +F+++D+N +G++s  E  ++
  KOO23645.1 10 RLVFDKFDANASGRVSTAEMSAM 32
                558****************9876 PP

  == domain 2  score: 13.3 bits;  conditional E-value: 3.3e-05
                HHHHHH-SS-SSCE-HHHHHHH CS
   EF-hand_5  3 dtFqaiDlNgDGkIskeELktl 24
                ++ + +D + DG I++eE+ ++
  KOO23645.1 47 KMMSDADRDDDGEINFEEFVAV 68
                567789*************876 PP

>> EF-hand_8  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.9   0.0    0.0082        11      29      53 ..      10      34 ..       5      35 .. 0.87
   2 !   28.4   0.2     8e-10   1.1e-06       2      55 .]      21      72 ..      20      72 .. 0.89

  Alignments for each domain:
  == domain 1  score: 5.9 bits;  conditional E-value: 0.0082
   EF-hand_8 29 dilfrefDtdgdGkisfeEFcvlle 53
                + +f++fD + +G++s  E  ++l+
  KOO23645.1 10 RLVFDKFDANASGRVSTAEMSAMLT 34
                678*************999888875 PP

  == domain 2  score: 28.4 bits;  conditional E-value: 8e-10
   EF-hand_8  2 kgkItreelrrilrilglkkglseeevdilfrefDtdgdGkisfeEFcvllerr 55
                +g ++++e++ +l+ +  k   ++ee+  +++ +D+d+dG i+feEF+++++++
  KOO23645.1 21 SGRVSTAEMSAMLTEIDAK--KTPEEIAKMMSDADRDDDGEINFEEFVAVVQKQ 72
                6999*******77655555..8****************************9986 PP

>> EF-hand_6  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.0   1.2e-05     0.017       2      27 ..       9      34 ..       8      39 .. 0.91
   2 !   11.9   0.0   0.00012      0.17      10      28 ..      53      71 ..      41      77 .. 0.86

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 1.2e-05
   EF-hand_6  2 lreaFklfDkdgdGkidaeElrkalr 27
                lr +F++fD + +G ++++E+ ++l+
  KOO23645.1  9 LRLVFDKFDANASGRVSTAEMSAMLT 34
                6779*******************998 PP

  == domain 2  score: 11.9 bits;  conditional E-value: 0.00012
   EF-hand_6 10 DkdgdGkidaeElrkalrk 28
                D+d+dG+i++eE++++ +k
  KOO23645.1 53 DRDDDGEINFEEFVAVVQK 71
                9**************9986 PP

>> EF-hand_4  Cytoskeletal-regulatory complex EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.1   4.5e-05     0.063      23      69 ..      21      69 ..       9      72 .. 0.78

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 4.5e-05
   EF-hand_4 23 dnkltgdkvapvlkn..skleedklekiwdladidedgkldfeefciam 69
                + +++  +++++l +  +k + ++++k+ + ad d+dg+++feef+ ++
  KOO23645.1 21 SGRVSTAEMSAMLTEidAKKTPEEIAKMMSDADRDDDGEINFEEFVAVV 69
                5667777888888752255667899********************9765 PP

>> EF-hand_9  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.1   9.7e-05      0.13       3      64 ..      12      71 ..      10      73 .. 0.84
   2 ?   -2.4   0.0       4.7   6.4e+03       1      22 [.     570     591 ..     570     597 .. 0.86

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 9.7e-05
   EF-hand_9  3 vFevcDtqktGrVpvsrlidyLravtaqdpeeseLeelakelDPdgedasvdldtflrvmre 64
                vF+ +D +  GrV  +++ ++L    a++++e e+ +  + +D d+  ++++++ f +v+++
  KOO23645.1 12 VFDKFDANASGRVSTAEMSAMLTEIDAKKTPE-EIAKMMSDADRDDD-GEINFEEFVAVVQK 71
                79********************8887765544.46678888887776.99*******99875 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 4.7
   EF-hand_9   1 etvFevcDtqktGrVpvsrlid 22 
                 +++F + D + +  V v +l +
  KOO23645.1 570 DRLFPIVDADMRAMVNVEKLAE 591
                 6789999****99999999865 PP

>> TFIIA  Transcription factor IIA, alpha/beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   9.2   4.7e-05     0.064     122     279 ..      62     243 ..      17     281 .. 0.41

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 4.7e-05
       TFIIA 122 leppvqipagvtlqtasg..............qlykvnv........qasgaqqiaaqplqqvvqqsqgsaaqssvaalqaqsqqaqalaepqqqlekq 198
                  e      a v++qtasg                             +a+++ ++aa+ ++ +v q+++  a+++ aa +++  + +a+a+ + +++++
  KOO23645.1  62 FEE---FVAVVQKQTASGgdfanvfinapgffG-----FlnrntkldEAKERVELAAKEAAIRVAQETADFAAAASAAAASS-AADGAIARAERDAKEH 151
                 444...455677777777766544444444441.....03333344434444444444444443443333333222222221.2222232222222212 PP

       TFIIA 199 ............qqqqqqqqqqqqqqqvqqqqqeesqqaqqasqe...qvagsqvessqtdgae.daleeespvlegelsaeeeagaqkeelsreei 279
                             +q  + ++++ +q+qv ++qq   q+ +++      q ++++ e + ++++e +++e ++++l+ e+++e+e+    eel +++ 
  KOO23645.1 152 nadaaqksreleEQAATLKAEAEKQKQVLRKQQ---QKLEEQ--MlavQAEKERREREAKEESErKEAEAKAKLLKLEKEKERERRRLAEELYKTQE 243
                 111111111111111111111111111111111...111111..11111111111111111111011111122244444444444444444444333 PP

>> SPARC_Ca_bdg  Secreted protein acidic and rich in cysteine Ca binding region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   8.8e-05      0.12      55     111 ..       8      66 ..       2      68 .. 0.86

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 8.8e-05
  SPARC_Ca_bdg  55 pvawkFsklDtnsdkvlsksELaplraplv..klehCikpflescDadkdkkislkEwc 111
                    ++  F+k+D n  + +s++E++++ ++++  k+ + i+++++ +D d+d++i+ +E++
    KOO23645.1   8 LLRLVFDKFDANASGRVSTAEMSAMLTEIDakKTPEEIAKMMSDADRDDDGEINFEEFV 66 
                   56778******************9999887224556799******************97 PP

>> Borrelia_P83  Borrelia P83/100 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3  24.0   0.00025      0.34     203     352 ..      86     253 ..      21     274 .. 0.59

  Alignments for each domain:
  == domain 1  score: 9.3 bits;  conditional E-value: 0.00025
  Borrelia_P83 203 l................ker...esqedakraqvlkeeldkk.qkdadkakkkadtaednadkqrke.vreklqeaknlpepadvsskkedkkva.. 276
                                    ker    ++e+a r   ++e +d + +  a+ a+  ad a + a++  ke   ++ q+ ++l+e+a++ +++ +k+ +  
    KOO23645.1  86 ApgffgflnrntkldeaKERvelAAKEAAIRV--AQETADFAaAASAAAASSAADGAIARAERDAKEhNADAAQKSRELEEQAATLKAEAEKQKQvl 180
                   15555555555555544333100333333333..345556441456677778888888888776555145677778888888888766554443322 PP

  Borrelia_P83 277 eekkreiekaqkeikkkdeeakkakdakaedlkkeskaeekeaedkeleakkereevaeDlqkikeevkakktsea 352
                    ++++++e  q  + + +e+ ++ ++ak e+ +ke+ a+ k   + e+e ++er+ +ae+l k++e+    + +++
    KOO23645.1 181 RKQQQKLEE-QMLAVQ-AEKERREREAKEESERKEAEAKAKL-LKLEKEKERERRRLAEELYKTQEQLLQANLTLN 253
                   455555555.333333.3333455555556666666666665.455778888999999999999998755555555 PP

>> Presenilin  Presenilin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.9   7.7   0.00083       1.2     234     311 ..     145     223 ..     115     291 .. 0.47

  Alignments for each domain:
  == domain 1  score: 7.9 bits;  conditional E-value: 0.00083
  Presenilin 234 eseeeeeaekkkeeasesskeeeseeesseksaqsse.seeeseeesseaessaeesseekeseessesseeeeeeeee 311
                 e++ +e++ +++++++e ++++++ + ++ek++q  + ++++ ee++ ++++++e++++e+++e++++++e++ +  + 
  KOO23645.1 145 ERDAKEHNADAAQKSRELEEQAATLKAEAEKQKQVLRkQQQKLEEQMLAVQAEKERREREAKEESERKEAEAKAKLLKL 223
                 2222222222222222222222222222222222222122222222222222222222222222222222222222111 PP

>> V_ATPase_I  V-type ATPase 116kDa subunit family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.1   9.1    0.0031       4.3      64     148 ..     134     219 ..      91     292 .. 0.46

  Alignments for each domain:
  == domain 1  score: 5.1 bits;  conditional E-value: 0.0031
  V_ATPase_I  64 eapeekeldeleeelekleeelkelnenlek.lkkelnelvelkavlekakefleee.eeeeeeeeseeeeeekeeeeeeeseeeee 148
                 +++ +  + + e++ ++++++  + +++le+   + + e++++k+vl+k ++ lee+  + ++e+e++e+e+ kee+e++e+e++++
  KOO23645.1 134 SSAADGAIARAERDAKEHNADAAQKSRELEEqAATLKAEAEKQKQVLRKQQQKLEEQmLAVQAEKERREREA-KEESERKEAEAKAK 219
                 222333333334444433333333332222202222333444455555555555544222222222222211.11111111111111 PP

>> Peptidase_S64  Peptidase family S64
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.3   7.0    0.0041       5.6      66     197 ..     122     254 ..      92     283 .. 0.55

  Alignments for each domain:
  == domain 1  score: 5.3 bits;  conditional E-value: 0.0041
  Peptidase_S64  66 telae.sssekssskqssSlfSksrktystkqssaksssskakksssvakaedvgkplrvletekltslntvl..eeeeeskekseesesssseek 158
                    +++a  +s+ + ss+ + ++   +r + + ++ +a++s + +  +++++ + + +k  +vl++++ +  +++l  + e+e++e++ ++es+ +e +
     KOO23645.1 122 ADFAAaASAAAASSAADGAIARAERDAKEHNADAAQKSRELE--EQAATLKAEAEKQKQVLRKQQQKLEEQMLavQAEKERREREAKEESERKEAE 215
                    222221334444444445555555555555544444444433..3456667777777888876655554433300333333333333444444444 PP

  Peptidase_S64 159 essvkeleeesvekeLkqLeedlaelmddinqsvinlsk 197
                     +++  + e++ e+e ++L e+l +  +++ q+ ++l k
     KOO23645.1 216 AKAKLLKLEKEKERERRRLAEELYKTQEQLLQANLTLNK 254
                    444555566677788899999999999999988887766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (694 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2793  (0.155781); expected 358.6 (0.02)
Passed bias filter:                      777  (0.0433376); expected 358.6 (0.02)
Passed Vit filter:                       193  (0.0107647); expected 17.9 (0.001)
Passed Fwd filter:                        38  (0.00211947); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 1.07u 0.32s 00:00:01.39 Elapsed: 00:00:00.48
# Mc/sec: 4381.35
//
Query:       KOO23646.1  [L=254]
Description: hypothetical protein Ctob_002716 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.1e-31  109.2   0.1    3.6e-31  109.0   0.1    1.1  1  DUF72     Protein of unknown function DUF72


Domain annotation for each model (and alignments):
>> DUF72  Protein of unknown function DUF72
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  109.0   0.1     2e-35   3.6e-31      55     217 ..       3     199 ..       1     200 [. 0.84

  Alignments for each domain:
  == domain 1  score: 109.0 bits;  conditional E-value: 2e-35
                 CCCCCS....G.-.SCHHHHHHHHHH.CHHHCT-EEEEEEE--TT--S.HHHHHHHHHHTTTS-....SEEEE--BGGGH....H.HHHHHHHTT-EEE CS
       DUF72  55 raither...n.e.daeealerflesalepLgeklgpllfQlppsfkfdeenlerLeaflaalp....llavEvRhrswf....e.llellrehgvavv 139
                  ++th+r       +a+ +l++fl++  ++Lge lgp+lfQ+p s ++d   ++ L++++aa p    ++a+EvRhrswf    + +lell+e+++ +v
  KOO23646.1   3 ATVTHRRdgqPgCdEARRELATFLAR-AAGLGEALGPILFQFPRSITCDLGLVRALAEVIAASPipnaRIAFEVRHRSWFafatNgVLELLHELRWCLV 100
                 579**9666425447**********8.**********************66********8877777955**********9999867*********7766 PP

                 EE.....................--SSC--------SSTEEEEEE--SHHTTB----HHHHHHHHHHHHHHHTCSSEEEEEE-SBCC.CHHHHHHHHHH CS
       DUF72 140 ld.....................epkkpklpledvttadfvyvRlhgreeryayrYseeelaewaerikawaaegrevyvffnndae.gqaplnaraLa 216
                                        e  +p   +e+  t d++yvRlhg+++++ y Ys+ ela +a  ++ +++++ ++yvff n+++ +++p+nar+L+
  KOO23646.1 101 EHpntldrsttvdksgdlngkryE-LEPLRGAEWPLTCDWAYVRLHGDNDEHTYTYSDGELATLATALHGYRQRAVRTYVFFLNCDQnAAMPHNARKLK 198
                 646899999999988877665421.4555555888888*********9899************************99999986665517779******9 PP

                 H CS
       DUF72 217 e 217
                 +
  KOO23646.1 199 Q 199
                 7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (254 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       292  (0.0162865); expected 358.6 (0.02)
Passed bias filter:                      271  (0.0151152); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.27s 00:00:00.68 Elapsed: 00:00:00.42
# Mc/sec: 1821.47
//
Query:       KOO23647.1  [L=289]
Description: ubox domain containing protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.8e-11   42.4   0.0    1.2e-10   41.4   0.0    1.5  1  U-box     U-box domain
    0.00025   20.8   0.0    0.00046   20.0   0.0    1.4  1  zf-Nse    Zinc-finger of the MIZ type in Nse subunit
     0.0014   18.9   0.2     0.0042   17.5   0.2    1.8  1  Ank       Ankyrin repeat
     0.0034   17.5   0.0     0.0062   16.6   0.0    1.4  1  zf-NOSIP  Zinc-finger of nitric oxide synthase-interacting pr
     0.0051   17.4   0.3      0.011   16.4   0.3    1.6  1  Ank_2     Ankyrin repeats (3 copies)
  ------ inclusion threshold ------
      0.022   15.5   0.2      0.045   14.6   0.2    1.5  1  DUF4037   Domain of unknown function (DUF4037)
       0.05   13.9   0.0        0.1   12.9   0.0    1.6  1  Ank_5     Ankyrin repeats (many copies)
        1.4    7.4   4.6          2    6.8   4.6    1.2  1  Porin_5   Putative porin


Domain annotation for each model (and alignments):
>> U-box  U-box domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.4   0.0   5.2e-14   1.2e-10       4      65 ..     132     191 ..     130     197 .. 0.93

  Alignments for each domain:
  == domain 1  score: 41.4 bits;  conditional E-value: 5.2e-14
                 GGB-TTT-SB-SSEEEETTTEEEEHHHHHHHHTT.SSB-TTT-SB--GGGSEE-HHHHHHHH CS
       U-box   4 efldpitlelmkdPvilpsgvvvdrstiekhllsrdktdPftrepltqdqlipnlelKekId 65 
                 e+++pit+ l  dPvi+ +g+v++rs+ie++l++ +  +P+t+ p+  ++l+p + +K++I 
  KOO23647.1 132 ELVCPITFSLPFDPVIAKDGKVYERSAIEEWLKQ-QGKSPLTNLPMG-KKLLPAMHVKNMIR 191
                 899*******************************.99******9986.68999999999996 PP

>> zf-Nse  Zinc-finger of the MIZ type in Nse subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.0   0.0     2e-07   0.00046       4      47 ..     125     167 ..     124     176 .. 0.89

  Alignments for each domain:
  == domain 1  score: 20.0 bits;  conditional E-value: 2e-07
                 XXXSSBXXSB-TTTSSB-SSEEEESSS--EEEHHHHHHHCTTTS CS
      zf-Nse   4 aieeerislkCPltlqpfeePvtskkCpHvFEreaIlelikrkk 47 
                 aiee+ ++l CP+t++   +Pv+ k    v+Er+aI+e +k++ 
  KOO23647.1 125 AIEEAFAELVCPITFSLPFDPVIAKDG-KVYERSAIEEWLKQQG 167
                 699999**********999*****995.5***********7765 PP

>> Ank  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5   0.2   1.9e-06    0.0042       2      25 ..     265     287 ..     264     288 .. 0.87

  Alignments for each domain:
  == domain 1  score: 17.5 bits;  conditional E-value: 1.9e-06
                 SBBHHHHHHHHTTHHHHHHHH.TTT CS
         Ank   2 GnTPLHlAatngkkriiklLL.hGA 25 
                 G T+L+lAa+ng+k+++  L+ +GA
  KOO23647.1 265 GVTALMLAANNGHKQVA--LIlSGA 287
                 99**************9..555887 PP

>> zf-NOSIP  Zinc-finger of nitric oxide synthase-interacting protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   0.0   2.8e-06    0.0062      27      74 ..     116     166 ..     104     167 .. 0.77

  Alignments for each domain:
  == domain 1  score: 16.6 bits;  conditional E-value: 2.8e-06
    zf-NOSIP  27 tqsvrlikdavkd.fd..ccslslqacrdpvltedgylyekeaileyilhq 74 
                 +q++r  k a+ + f    c +++    dpv+++dg +ye+ ai e++  q
  KOO23647.1 116 AQELRRHKSAIEEaFAelVCPITFSLPFDPVIAKDGKVYERSAIEEWLKQQ 166
                 6777777777765343336889999999****************9987655 PP

>> Ank_2  Ankyrin repeats (3 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   0.3   4.7e-06     0.011      27      76 ..     242     286 ..     219     289 .] 0.70

  Alignments for each domain:
  == domain 1  score: 16.4 bits;  conditional E-value: 4.7e-06
       Ank_2  27 ktaLhyAakngnleivklLlehadndgrtpLhyAarsghleivklLlekg 76 
                   aL  Aa++g  + + + ++++ n+g t+L++Aa +gh +++ +L   g
  KOO23647.1 242 AAALRKAARRG--D-AGAVVSAQSNTGVTALMLAANNGHKQVALILS--G 286
                 55677777777..5.33444445689*********99**88887774..4 PP

>> DUF4037  Domain of unknown function (DUF4037)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.6   0.2     2e-05     0.045      11      76 ..     193     261 ..     184     276 .. 0.81

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 2e-05
     DUF4037  11 avtnGevfaDelgefteireklekayPedvrlkklaar...lakiaqegqynleralkrgdelaarlal 76 
                 +v +G++  D+  e++  r++ e+a Pe+v  +k+aa+   ++k+a ++++ l +a++rgd  a+  a 
  KOO23647.1 193 MVASGTLTGDKADEWELRRKEEEQAAPEKVAAEKVAAEkaaAEKAAAKKAAALRKAARRGDAGAVVSAQ 261
                 568999999**************************97622255667777789999******98876655 PP

>> Ank_5  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   4.6e-05       0.1       7      36 ..     256     285 ..     252     289 .] 0.84

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 4.6e-05
       Ank_5   7 advnrldgggntpLhvAakygaadvvrlLl 36 
                 a v ++ + g+t+L++Aa++g+ +v+++L 
  KOO23647.1 256 AVVSAQSNTGVTALMLAANNGHKQVALILS 285
                 667788999*************99998885 PP

>> Porin_5  Putative porin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.8   4.6   0.00088         2       5      54 ..     187     236 ..     184     264 .. 0.61

  Alignments for each domain:
  == domain 1  score: 6.8 bits;  conditional E-value: 0.00088
     Porin_5   5 vnLiellVkqgvltkeqaealikqAeaeaaaaaka......aaeaaaaaaaasaaa 54 
                  n+i+++V  g lt ++a++   + ++e++aa ++      a     a+ +a+a +
  KOO23647.1 187 KNMIRVMVASGTLTGDKADEWELRRKEEEQAAPEKvaaekvA-----AE-KAAAEK 236
                 69*****************87444444443333332333221.....11.111111 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (289 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1162  (0.0648112); expected 358.6 (0.02)
Passed bias filter:                      502  (0.0279993); expected 358.6 (0.02)
Passed Vit filter:                        57  (0.00317921); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.47u 0.27s 00:00:00.74 Elapsed: 00:00:00.42
# Mc/sec: 2067.11
//
Query:       KOO23648.1  [L=205]
Description: limb region 1-like protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.6e-15   56.5   0.1    4.2e-15   55.8   0.1    1.3  1  Hint             Hint module
     0.0058   16.8   0.0     0.0071   16.5   0.0    1.2  1  Thioesterase     Thioesterase domain
  ------ inclusion threshold ------
      0.069   13.1   0.0       0.15   12.0   0.0    1.6  1  Intein_splicing  Intein splicing domain


Domain annotation for each model (and alignments):
>> Hint  Hint module
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.8   0.1     7e-19   4.2e-15      17     155 ..      10     143 ..       7     159 .. 0.94

  Alignments for each domain:
  == domain 1  score: 55.8 bits;  conditional E-value: 7e-19
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX. CS
        Hint  17 stvtvedgeqkslseLepGdkVlavdesgevvfsevllfldrdseqraefveietengekltlTpaHLvfvsenekssseeeeavfaskvregdyvlve 115
                 +tv +++g+++sl+ L++Gd+++ + ++g ++++ v +   +++ +  +f++++t +g+++tlT+ H v v  +++++        as+++ gd++ + 
  KOO23648.1  10 ATVVLASGAKRSLDALHVGDEIVVATADGILTTDSVSSLSLANKDAVSTFLMLSTADGRNVTLTEGHRVPVGPSCCATV-----KTASEMKLGDTMWL- 102
                 79**********************************************************************9998776.....68************. PP

                 .XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXX CS
        Hint 116 dtaskelrpskvvsvsteektGvyAPlTehGti.vVdgvla 155
                  ++++   p+ v+++ ++ k+G+ +P+ +hG+  ++dgv++
  KOO23648.1 103 ASTTGAAIPAAVTKIAQVSKMGLHSPVMRHGSFpLIDGVVT 143
                 88888999***********************9878999986 PP

>> Thioesterase  Thioesterase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.0   1.2e-06    0.0071     127     194 ..      37     107 ..      14     147 .. 0.82

  Alignments for each domain:
  == domain 1  score: 16.5 bits;  conditional E-value: 1.2e-06
                   CCTTHH..HCCTTTHCCHHHHHHHHHHHHHHHHHTCCS.-TTSCSEHHCEEEEEEGSS-CTCCCCCCCHCH CS
  Thioesterase 127 tdlggt..epeelledeellsellpalradyraleqys.lrpeaaqklratlfngsddklkdldtlelaer 194
                   + ++ t  ++  +l++++++s++l + +ad+r+++ ++ +r    ++++at++  s++kl+d ++l  +++
    KOO23648.1  37 DGILTTdsVSSLSLANKDAVSTFLMLSTADGRNVTLTEgHRVPVGPSCCATVKTASEMKLGDTMWLASTTG 107
                   55555566778899***********************9988889999*****************9766654 PP

>> Intein_splicing  Intein splicing domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   2.5e-05      0.15      26      94 ..      33     122 ..      12     190 .. 0.66

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 2.5e-05
                      EETTTTEEEEEEEEEEE...EEEEEEEEEEEETTS-EEEEETT-EEEECCT.TEEEEEECCC--TT-EEEEE..................H CS
                      xxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxx..................x RF
  Intein_splicing  26 lnledlklevksvkkli...klklkelyeiklesgrkikaTpeHkllvvrd.egivEkradeLkegdliavp..................d 94 
                      +   d  l  +sv+ l    k ++++ + + ++ gr++ +T +H++ v      +v k+a+e+k gd++ ++                  +
       KOO23648.1  33 VATADGILTTDSVSSLSlanKDAVSTFLMLSTADGRNVTLTEGHRVPVGPScCATV-KTASEMKLGDTMWLAsttgaaipaavtkiaqvsK 122
                      455555566666655441004445589999******************98885555.**********998775555555555555555550 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (205 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       436  (0.0243181); expected 358.6 (0.02)
Passed bias filter:                      352  (0.019633); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.41u 0.23s 00:00:00.64 Elapsed: 00:00:00.38
# Mc/sec: 1597.44
//
Query:       KOO23649.1  [L=499]
Description: hypothetical protein Ctob_002711 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    0.00015   21.6   0.0       0.53   10.5   0.0    3.2  3  LRR_6     Leucine Rich repeat
  ------ inclusion threshold ------
      0.029   13.9   1.4      0.043   13.4   1.4    1.2  1  FTZ       Fushi tarazu (FTZ), N-terminal region
        0.2   12.1   0.0        1.2    9.7   0.0    2.3  2  LRR_4     Leucine Rich repeats (2 copies)


Domain annotation for each model (and alignments):
>> LRR_6  Leucine Rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.0      0.72   4.3e+03      12      23 ..     243     254 ..     242     255 .. 0.80
   2 !    7.4   0.0   0.00088       5.3       5      23 ..     428     446 ..     427     447 .. 0.93
   3 !   10.5   0.0   8.8e-05      0.53       4      23 ..     455     474 ..     452     475 .. 0.93

  Alignments for each domain:
  == domain 1  score: -1.7 bits;  conditional E-value: 0.72
       LRR_6  12 gNdIgDeGaeaL 23 
                 ++++ D+G++ L
  KOO23649.1 243 WHEFEDKGVTDL 254
                 78899***9866 PP

  == domain 2  score: 7.4 bits;  conditional E-value: 0.00088
       LRR_6   5 LteLdLsgNdIgDeGaeaL 23 
                 L+eL +  N +gD G++aL
  KOO23649.1 428 LRELYVGANSFGDTGMIAL 446
                 899***************9 PP

  == domain 3  score: 10.5 bits;  conditional E-value: 8.8e-05
       LRR_6   4 hLteLdLsgNdIgDeGaeaL 23 
                 +L+ L L+gN+Ig  G++aL
  KOO23649.1 455 SLKVLWLNGNQIGKNGVTAL 474
                 7999**************98 PP

>> FTZ  Fushi tarazu (FTZ), N-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   1.4   7.1e-06     0.043      67     129 ..      59     119 ..      38     142 .. 0.77

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 7.1e-06
                 XXXXXXXXXX....XXXXX.XXXXXXXX..........XXXX....XXXXXXXXXXXXXXXXX CS
         FTZ  67 sysescyyanykyseqeqvqqqqevpavpaaaalesyqlpapvsaaapvksrkrkaeedaaai 129
                 sy+   y +     +qe+++qqq++++vp   a +  ++p p+++ a +k +krka     + 
  KOO23649.1  59 SYAAGEYTTAPPVVQQESTRQQQQQQPVP--GANPGDAAPRPMMSKAALKNEKRKAARRNPTA 119
                 55555566665666889999999999997..77788899****************98743333 PP

>> LRR_4  Leucine Rich repeats (2 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.0      0.38   2.3e+03      22      33 ..     425     436 ..     400     449 .. 0.62
   2 ?    9.7   0.0    0.0002       1.2      19      37 ..     450     467 ..     426     475 .. 0.67

  Alignments for each domain:
  == domain 1  score: -0.8 bits;  conditional E-value: 0.38
                 -TT--EEE-.-S CS
       LRR_4  22 lpnLkeLdLsgN 33 
                 + +L+eL++  N
  KOO23649.1 425 CGQLRELYVGAN 436
                 335777777445 PP

  == domain 2  score: 9.7 bits;  conditional E-value: 0.0002
                 HHH-TT--EEE-.-S---- CS
       LRR_4  19 leklpnLkeLdLsgNnlit 37 
                 +  + +Lk+L+L+gN +i+
  KOO23649.1 450 IVAMASLKVLWLNGN-QIG 467
                 345889999999888.775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (499 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1416  (0.0789782); expected 358.6 (0.02)
Passed bias filter:                      815  (0.0454571); expected 358.6 (0.02)
Passed Vit filter:                        78  (0.00435049); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.63u 0.29s 00:00:00.92 Elapsed: 00:00:00.43
# Mc/sec: 3512.81
//
Query:       KOO23650.1  [L=793]
Description: copper-exporting ATPase, partial [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.6e-45  154.2   0.9    2.6e-45  154.2   0.9    2.1  2  E1-E2_ATPase  E1-E2 ATPase
    4.3e-30  105.6   6.5    3.5e-29  102.6   5.4    2.5  2  Hydrolase     haloacid dehalogenase-like hydrolase
    2.7e-15   56.5   0.0    5.9e-15   55.5   0.0    1.6  1  HMA           Heavy-metal-associated domain
    1.6e-06   28.7   0.0    2.8e-06   27.9   0.0    1.5  1  HAD           haloacid dehalogenase-like hydrolase
     0.0004   20.2   0.2     0.0012   18.7   0.3    1.6  2  Hydrolase_3   haloacid dehalogenase-like hydrolase
  ------ inclusion threshold ------
       0.66   10.3   3.5          2    8.8   0.4    2.8  2  EccE          Putative type VII ESX secretion system transloc


Domain annotation for each model (and alignments):
>> E1-E2_ATPase  E1-E2 ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  154.2   0.9   8.7e-49   2.6e-45      15     181 .]     336     518 ..     322     518 .. 0.94
   2 ?   -1.4   0.2      0.49   1.5e+03     147     170 ..     590     614 ..     578     622 .. 0.71

  Alignments for each domain:
  == domain 1  score: 154.2 bits;  conditional E-value: 8.7e-49
                   -EEEEGGG--TTSEEEEETT-B--SEEEEEEE-SEEE-TTTS---S-EE-G-TTEE-TT-EEEE-EEEEEEEE-TTTSTTTTTSTTS--------HH CS
  E1-E2_ATPase  15 eeeidakelvpGDivllkagdrvpaDgrivegsaevdesaLTGEslpvekekgdmvfsGtvvvsgeakavVtatgedtelgkiarlveeakskktpl 111
                    +e+ ++ l  +D+v++ +g  vp+Dg ++ g ++vde++LTGEs+pv k  gd+v++Gt++  g + ++V+a +e+++l++i+++v++a+++++++
    KOO23650.1 336 PREVTVSSLAKDDVVKVLPGAHVPVDGLVLRGASSVDEAMLTGESMPVPKAPGDKVMGGTINGTGVLFVRVLASAEHSTLSQIMKVVADAQHRRPKI 432
                   57899******************************************************************************************** PP

                   HHHHHHHHHHHHHHHHHHHHHHHHS-STTTSSTT................HHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHHHHHT CS
  E1-E2_ATPase 112 qkkldklgkvlvpvvlliallvflialllgksla................eallralallvaaiPcaLplavplalalgarrlakk 181
                   q ++d+++ ++vpvv+ +all++l++  +                     +a+++++a+lv+a+PcaL+la+p+a+++g + +a++
    KOO23650.1 433 QAFADRVSTYFVPVVVGLALLTYLTWTAVDVLGYlphyylthcglkdtqlFAFMFGCAVLVVACPCALGLATPTAVMVGGGVAARH 518
                   **************************995555556677778888888889*******************************99986 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 0.49
                   HHHHHHHHHHHHS-T.THHHHHHHH CS
  E1-E2_ATPase 147 allralallvaaiPc.aLplavpla 170
                    l  + a+lva+ P+ aL++a+ l+
    KOO23650.1 590 ELKGMTAVLVAVAPEtALVAALRLV 614
                   4566899999999984677776655 PP

>> Hydrolase  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.8   0.0       4.4   1.3e+04     175     189 ..      94     108 ..      85     111 .. 0.79
   2 !  102.6   5.4   1.2e-32   3.5e-29       2     210 .]     535     706 ..     534     706 .. 0.79

  Alignments for each domain:
  == domain 1  score: -3.8 bits;  conditional E-value: 4.4
                 SHHHHHHHHHHHTST CS
                 xxxxxxxxxxxxxxx RF
   Hydrolase 175 spegkvaaireLqgk 189
                  p+  vaai++L+ +
  KOO23650.1  94 RPDEIVAAIQRLGYE 108
                 6899999***99644 PP

  == domain 2  score: 102.6 bits;  conditional E-value: 1.2e-32
                 SEEEEESBTTTBCHHHHHHHHHHHHCHHHHHHHHHHHHCHHHHHH.HHHHHHHHHHHHHHHHETTTEHHHHTHHHHHHHHHCHHHHHHHHHHHHHHCHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   Hydrolase   2 ktvvfDkdGTLttgepsvedvivsaalalaaaletgsehpigkal.vaaakarsgaltgfatfigrgayaigkpewltaldippdlgaaigsaqsqgrt 99 
                  +v+fDk+GTLttge +v+ v v                     l +aa   ++++ ++++      a+ +    +  +      + a   +   +   
  KOO23650.1 535 SAVCFDKTGTLTTGELRVRHVSVWG----------------VDGLpAAAPASLQPPAQEITG-----AVEEEMAGYELKG-----MTAVLVAVAPETAL 607
                 69*************9999988888................556633333444555555555.....3333333322222.....23335555666666 PP

                 HHHHTTHHHHHHHHHHTHHBHTTHHHHHHHHHHTTEEEEEEESSEHHHHHHHHHHTTGGGESEEEEHHCESSTTTSHHHHHHHHHHHTSTGGGEEEEES CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   Hydrolase 100 vallqaralavftiadplkvkpeaaeavasLkaagievvlltgdnpetaeraanqlGddyfdaviasdietvakpspegkvaaireLqgkpeevamVGD 198
                 va l  r+++++ ++d+  +kpea  +v++L +++iev+l++gdn++ta  + +++G         + + + a+++p+gk a++ eLq  ++ vamVGD
  KOO23650.1 608 VAAL--RLVGLVVVSDS--LKPEAFSVVQWLERRNIEVWLVSGDNERTAAQIGREAG--------IARDRVLAEVKPQGKAAKLAELQRLGHVVAMVGD 694
                 7777..***********..**************************************........445555*****************99999****** PP

                 SHHHHHHHHHTT CS
                 xxxxxxxxxxxx RF
   Hydrolase 199 gvnDaaalaaAg 210
                 gvnDa+ala+A+
  KOO23650.1 695 GVNDAPALAQAN 706
                 **********96 PP

>> HMA  Heavy-metal-associated domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.5   0.0     2e-18   5.9e-15       1      62 []      47     108 ..      47     108 .. 0.98

  Alignments for each domain:
  == domain 1  score: 55.5 bits;  conditional E-value: 2e-18
         HMA   1 tvrvsgmhCagCaakvekvLselpgVesvkvdlatktvtVegdaestklrkiieaiekagyk 62 
                 tv+v+gm+C++C+++ve+ L ++pgV s++v+l  k + +++d+ st + +i++ai+ +gy+
  KOO23650.1  47 TVAVEGMTCTACVGAVERGLRAHPGVLSASVSLMGKAAKIRYDERSTRPDEIVAAIQRLGYE 108
                 799**********************************************************7 PP

>> HAD  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.9   0.0   9.4e-10   2.8e-06       3     187 ..     539     702 ..     537     703 .. 0.55

  Alignments for each domain:
  == domain 1  score: 27.9 bits;  conditional E-value: 9.4e-10
         HAD   3 fDfDgTLldgdslelllrfllrrgaprlwralreklllal....frellrldraglaelleallaglseelaaelerfvaevirpklldpgalellaah 97 
                 fD  gTL++g+     + +++  g p ++ a ++ + + +     +e++ +   +l+ + + l a  +e     + r+v  v+    l+p+a  ++++ 
  KOO23650.1 539 FDKTGTLTTGELRVRHVSVWGVDGLPAAAPASLQPPAQEItgavEEEMAGY---ELKGMTAVLVAVAPETALVAALRLVGLVVVSDSLKPEAFSVVQWL 634
                 555566666655554444333333333222222222222222223333333...23333333333333222222222222223333489********** PP

         HAD  98 raaGdrvvvvSgglrplvepllaelgadevlatelevddrltgelglegkpvrgegkvaalrewlaaegegidleevvay.GDspsDlpll 187
                  +++++v++vSg +++ +  + +e g    +a +     r+ +e     kp  +++k+a+l++          l +vva  GD+++D p+l
  KOO23650.1 635 ERRNIEVWLVSGDNERTAAQIGREAG----IARD-----RVLAE----VKPQGKAAKLAELQR----------LGHVVAMvGDGVNDAPAL 702
                 **************************....8883.....55555....344444445577777..........33466666********98 PP

>> Hydrolase_3  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.0       1.2   3.7e+03      17      53 ..     624     660 ..     620     664 .. 0.76
   2 !   18.7   0.3     4e-07    0.0012     206     244 ..     689     727 ..     675     734 .. 0.88

  Alignments for each domain:
  == domain 1  score: -2.6 bits;  conditional E-value: 1.2
                  -HHHHHHHHHHHHTTSEEEEE-SS-HHHHHHHHHHCC CS
  Hydrolase_3  17 sektkeaikklkekgikvviATGRslravlpvleelg 53 
                  ++++ ++++ l+ ++i+v + +G + r++ ++ +e g
   KOO23650.1 624 KPEAFSVVQWLERRNIEVWLVSGDNERTAAQIGREAG 660
                  5666777888888999999999988888888776665 PP

  == domain 2  score: 18.7 bits;  conditional E-value: 4e-07
                  EEEEESSGGGHHHHHHSSEEEEETTS-HHHHHHSSEEE- CS
  Hydrolase_3 206 viafGDgeNDieMLeaaglgvAmgnaseevkkaAdyvtk 244
                  v+ +GDg ND + L +a++g+A+g++++ +++ Ad+v  
   KOO23650.1 689 VAMVGDGVNDAPALAQANVGIALGSGTDVAIETADMVLM 727
                  7789********************************975 PP

>> EccE  Putative type VII ESX secretion system translocon, EccE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.8   0.2      0.21   6.3e+02      15      76 ..      55     112 ..      42     140 .. 0.76
   2 ?    8.8   0.4   0.00067         2      28      78 ..     651     701 ..     631     749 .. 0.87

  Alignments for each domain:
  == domain 1  score: 0.8 bits;  conditional E-value: 0.21
        EccE  15 peenvaalsaRgggtegaaraaaaaarRlakaLreqGirarvleaeeldaalaalavglaaa 76 
                  +++v+a+++       a+  + +a+  l+ + ++  ++ r ++ +e+ aa+++l+ +++++
  KOO23650.1  55 CTACVGAVERG----LRAHPGVLSASVSLMGKAAKIRYDERSTRPDEIVAAIQRLGYEAEVQ 112
                 56777777776....77778888888899999999999999999999999999998877655 PP

  == domain 2  score: 8.8 bits;  conditional E-value: 0.00067
        EccE  28 gtegaaraaaaaarRlakaLreqGirarvleaeeldaalaalavglaaapa 78 
                  + +++r a +a +R++++ + qG +a+++e + l +++a +++g + apa
  KOO23650.1 651 TAAQIGREAGIARDRVLAEVKPQGKAAKLAELQRLGHVVAMVGDGVNDAPA 701
                 678999*************************************99987776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (793 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       578  (0.0322383); expected 358.6 (0.02)
Passed bias filter:                      390  (0.0217525); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.64u 0.25s 00:00:00.89 Elapsed: 00:00:00.42
# Mc/sec: 5634.43
//
Query:       KOO23651.1  [L=682]
Description: amidohydrolase 2 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.098   12.8   0.0       0.27   11.5   0.0    1.8  1  DUF2749   Protein of unknown function (DUF2749)


Domain annotation for each model (and alignments):
>> DUF2749  Protein of unknown function (DUF2749)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   1.5e-05      0.27       7      54 ..       9      58 ..       1      64 [. 0.68

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 1.5e-05
     DUF2749  7 Ivlviavaagagtilwlvvqpr....agtsgsgeaqRehrerFfgadkdrdv 54
                + l++ va +    + + v+ r    a+ s   ++ R   erF ++ +d+ +
  KOO23651.1  9 LLLIVTVAEAVNNQWRI-VHERrrlvAPISEEAQN-RRTLERFTKGHPDNSI 58
                56777788777766666.66555855555444444.5555*********876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (682 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       301  (0.0167884); expected 358.6 (0.02)
Passed bias filter:                      272  (0.015171); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.56u 0.24s 00:00:00.80 Elapsed: 00:00:00.42
# Mc/sec: 4858.54
//
Query:       KOO23652.1  [L=465]
Description: hypothetical protein Ctob_002718 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.3e-10   40.3   0.7    3.2e-05   23.5   0.1    2.9  3  EF-hand_6     EF-hand domain
    3.9e-10   38.5   0.5    2.3e-05   23.6   0.1    2.7  2  EF-hand_1     EF hand
    6.3e-09   36.2   1.5    6.5e-07   29.7   0.3    2.2  2  EF-hand_7     EF-hand domain pair
    4.5e-06   26.4   0.5    6.9e-05   22.6   0.1    2.4  2  EF-hand_8     EF-hand domain pair
    2.3e-05   23.7   1.8    0.00021   20.6   0.4    2.6  2  EF-hand_5     EF hand
  ------ inclusion threshold ------
      0.049   14.0   0.9       0.56   10.6   0.0    2.7  3  EF-hand_9     EF-hand domain
        0.8   10.5   6.6          2    9.2   2.4    3.0  2  Occludin_ELL  Occludin homology domain
        2.5    8.2  10.2       0.12   12.5   0.8    2.8  3  Podoplanin    Podoplanin


Domain annotation for each model (and alignments):
>> EF-hand_6  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.3   0.0   1.3e-05     0.029       3      31 .]      50      77 ..      48      77 .. 0.91
   2 !   23.5   0.1   1.4e-08   3.2e-05       2      27 ..      85     110 ..      84     120 .. 0.92
   3 ?   -3.5   0.0       6.4   1.4e+04      20      27 ..     229     236 ..     228     238 .. 0.84

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 1.3e-05
   EF-hand_6  3 reaFklfDkdgdGkidaeElrkalrkalg 31
                +++Fk++D d++ +++++E+ + +r a+g
  KOO23652.1 50 MDLFKEWDADKSASVTRDEFHAGIR-AMG 77
                79********************999.776 PP

  == domain 2  score: 23.5 bits;  conditional E-value: 1.4e-08
   EF-hand_6   2 lreaFklfDkdgdGkidaeElrkalr 27 
                 ++++F++fD d++G +d++El++al+
  KOO23652.1  85 IDSVFDAFDADRSGDVDFSELKHALT 110
                 679**********************8 PP

  == domain 3  score: -3.5 bits;  conditional E-value: 6.4
   EF-hand_6  20 eElrkalr 27 
                 +E+ +alr
  KOO23652.1 229 AEFAAALR 236
                 699***99 PP

>> EF-hand_1  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.7   0.0   3.2e-05     0.071       2      28 ..      49      75 ..      48      76 .. 0.90
   2 !   23.6   0.1     1e-08   2.3e-05       2      28 ..      85     111 ..      84     112 .. 0.94

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 3.2e-05
                HHHHHHHHTTTSSSEEEHHHHHHHHHH CS
   EF-hand_1  2 lkeiFrefDkDgdGkIdfeEfkellkk 28
                + ++F+e D D++  ++++Ef + +++
  KOO23652.1 49 VMDLFKEWDADKSASVTRDEFHAGIRA 75
                5789*****************999886 PP

  == domain 2  score: 23.6 bits;  conditional E-value: 1e-08
                 HHHHHHHHTTTSSSEEEHHHHHHHHHH CS
   EF-hand_1   2 lkeiFrefDkDgdGkIdfeEfkellkk 28 
                 ++ +F+ fD D++G +df+E+k++l++
  KOO23652.1  85 IDSVFDAFDADRSGDVDFSELKHALTR 111
                 7899********************986 PP

>> EF-hand_7  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.6   0.0   3.2e-05     0.071      46      69 ..      49      72 ..      29      74 .. 0.85
   2 !   29.7   0.3   2.9e-10   6.5e-07       5      69 ..      50     108 ..      48     110 .. 0.93

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 3.2e-05
   EF-hand_7 46 lellfkefDtdkdGvisfdEFlkl 69
                + +lfke+D dk+ ++++dEF++ 
  KOO23652.1 49 VMDLFKEWDADKSASVTRDEFHAG 72
                6689*****************975 PP

  == domain 2  score: 29.7 bits;  conditional E-value: 2.9e-10
   EF-hand_7   5 keaFkelDtdgdgyldkeellrllrkifqgagegsklsdeelellfkefDtdkdGvisfdEFlkl 69 
                 ++ Fke D d++ +++++e++  +r        g++ +  +++ +f+ fD d++G ++f+E++++
  KOO23652.1  50 MDLFKEWDADKSASVTRDEFHAGIR------AMGFSAPTAAIDSVFDAFDADRSGDVDFSELKHA 108
                 789******************9999......9999999999********************9987 PP

>> EF-hand_8  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.5   0.0   0.00038      0.84      22      50 ..      43      71 ..      30      74 .. 0.85
   2 !   22.6   0.1   3.1e-08   6.9e-05       3      52 ..      62     109 ..      60     112 .. 0.82

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 0.00038
   EF-hand_8 22 glseeevdilfrefDtdgdGkisfeEFcv 50
                + ++  v +lf+e D d++  ++ +EF++
  KOO23652.1 43 HANALTVMDLFKEWDADKSASVTRDEFHA 71
                488889999******************96 PP

  == domain 2  score: 22.6 bits;  conditional E-value: 3.1e-08
   EF-hand_8   3 gkItreelrrilrilglkk...glseeevdilfrefDtdgdGkisfeEFcvll 52 
                  ++tr+e++      g++    +    ++d++f++fD d++G ++f E    l
  KOO23652.1  62 ASVTRDEFHA-----GIRAmgfSAPTAAIDSVFDAFDADRSGDVDFSELKHAL 109
                 689*******.....6666644477788********************87665 PP

>> EF-hand_5  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.2   0.0      0.13   2.9e+02       3      21 ..      51      69 ..      49      73 .. 0.87
   2 !   20.6   0.4   9.5e-08   0.00021       1      22 [.      85     106 ..      85     109 .. 0.90

  Alignments for each domain:
  == domain 1  score: 1.2 bits;  conditional E-value: 0.13
                HHHHHH-SS-SSCE-HHHH CS
   EF-hand_5  3 dtFqaiDlNgDGkIskeEL 21
                d+F++ D++++  ++++E+
  KOO23652.1 51 DLFKEWDADKSASVTRDEF 69
                789999****999999999 PP

  == domain 2  score: 20.6 bits;  conditional E-value: 9.5e-08
                 HHHHHHHH-SS-SSCE-HHHHH CS
   EF-hand_5   1 lkdtFqaiDlNgDGkIskeELk 22 
                 ++ +F+a+D++++G ++++ELk
  KOO23652.1  85 IDSVFDAFDADRSGDVDFSELK 106
                 5679*****************8 PP

>> EF-hand_9  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.9   0.0      0.27     6e+02      36      63 ..      48      74 ..      39      76 .. 0.84
   2 ?   10.6   0.0   0.00025      0.56       1      26 [.      86     111 ..      86     144 .. 0.84
   3 ?   -3.0   0.2       4.2   9.4e+03      10      22 ..     156     168 ..     155     168 .. 0.87

  Alignments for each domain:
  == domain 1  score: 0.9 bits;  conditional E-value: 0.27
   EF-hand_9 36 eLeelakelDPdgedasvdldtflrvmr 63
                 + +l ke D d   asv  d f++ +r
  KOO23652.1 48 TVMDLFKEWDADKS-ASVTRDEFHAGIR 74
                677899999*9999.*********9877 PP

  == domain 2  score: 10.6 bits;  conditional E-value: 0.00025
   EF-hand_9   1 etvFevcDtqktGrVpvsrlidyLra 26 
                 ++vF+++D ++ G V  s+l+  L  
  KOO23652.1  86 DSVFDAFDADRSGDVDFSELKHALTR 111
                 689****************9987754 PP

  == domain 3  score: -3.0 bits;  conditional E-value: 4.2
   EF-hand_9  10 qktGrVpvsrlid 22 
                 +k G V v++++d
  KOO23652.1 156 EKGGAVVVTKVVD 168
                 788*******997 PP

>> Occludin_ELL  Occludin homology domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.8   0.1      0.18     4e+02      37      81 ..     101     146 ..      97     149 .. 0.77
   2 ?    9.2   2.4    0.0009         2       6      95 ..     291     384 ..     286     405 .. 0.79

  Alignments for each domain:
  == domain 1  score: 1.8 bits;  conditional E-value: 0.18
  Occludin_ELL  37 kfseLerelkelkegsk.eykkieeeilqeykklkkdpeyqekkkr 81 
                   +fseL++ l +++ + + e ++ ++e+  ++k+ k +++ + +  r
    KOO23652.1 101 DFSELKHALTRSPADVErELRQKNAEMKAKLKDAKAKTDIKGQDIR 146
                   5888999999888888878888888888889888888877666555 PP

  == domain 2  score: 9.2 bits;  conditional E-value: 0.0009
  Occludin_ELL   6 saeqrerYkaeFnkeYkeYkelhael...eevskkfseLerelkelkegskeykkieeeilqeykklkk.dpeyqekkkrceyLkekLshiKkl 95 
                   +++  e+ ka+  ++++eYk+    +   +ev +++s +e+++ e+k   ++ ++  +   +++ +     +e  ++ +r+ ++ + L+ +K++
    KOO23652.1 291 KQRLIEELKAQLARQHAEYKSKSGGVpasAEVLQRMSAMEAQMAEAKAAAQKAESKLAAASHQLTEAAAaRAERADADRRLAEMAKLLAEMKRK 384
                   5556678899999**********99955567778888888888888888874444444447777777666888889999999999999999987 PP

>> Podoplanin  Podoplanin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.2      0.64   1.4e+03      66      82 ..     189     205 ..     149     230 .. 0.46
   2 ?   12.5   0.8   5.4e-05      0.12      31      84 ..     227     278 ..     207     301 .. 0.70
   3 ?    0.0   0.7      0.36   8.1e+02      63     110 ..     311     359 ..     300     376 .. 0.60

  Alignments for each domain:
  == domain 1  score: -0.8 bits;  conditional E-value: 0.64
                 XXXXXXXXX-----GGG CS
  Podoplanin  66 tlvptstesvtdlrled 82 
                 + v+ ++e   +   e 
  KOO23652.1 189 AVVAHEAEARQHAAEEA 205
                 11222222222222222 PP

  == domain 2  score: 12.5 bits;  conditional E-value: 5.4e-05
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-----GGG-X CS
  Podoplanin  31 divtpgvedekvtpGvednvvttgaseepyesglttlvptstesvtdlrledlp 84 
                 +    ++  + + +G+ed+   tgas+ +y+  l++ v+t++    + ++ d+ 
  KOO23652.1 227 QEAEFAAALRAAKKGKEDSAFSTGASSSEYKPTLAAKVATNRVA--QAKATDRE 278
                 3334466678899*************************886533..33333333 PP

  == domain 3  score: 0.0 bits;  conditional E-value: 0.36
                 XXXXXXXXXXXX-----.GGG-XXXXXXXXXXXXXXXXXXXXXXXXXXX CS
  Podoplanin  63 glttlvptstesvtdlr.ledlptaestvkakeesqstttlnvvtshst 110
                 +++  vp s+e    +  +e +++++ + ++k es+ +++++  t  + 
  KOO23652.1 311 SKSGGVPASAEVLQRMSaMEAQMAEAKAAAQKAESKLAAASHQLTEAAA 359
                 4555677777777665514555555556666667777777666655544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (465 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2511  (0.140052); expected 358.6 (0.02)
Passed bias filter:                      529  (0.0295053); expected 358.6 (0.02)
Passed Vit filter:                        94  (0.0052429); expected 17.9 (0.001)
Passed Fwd filter:                        44  (0.00245412); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 1.08u 0.36s 00:00:01.44 Elapsed: 00:00:00.53
# Mc/sec: 2618.60
//
Query:       KOO23653.1  [L=149]
Description: pf01906 domain protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    8.8e-13   48.8   0.2    1.4e-12   48.2   0.2    1.3  1  YbjQ_1    Putative heavy-metal-binding


Domain annotation for each model (and alignments):
>> YbjQ_1  Putative heavy-metal-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.2   0.2   7.7e-17   1.4e-12      41     103 ..       8      69 ..       4      70 .. 0.96

  Alignments for each domain:
  == domain 1  score: 48.2 bits;  conditional E-value: 7.7e-17
      YbjQ_1  41 slvGGelkayeeeleeareeAlerlkeeAeelGAnAvvgvrldtseigekgmlevlayGTAVk 103
                 ++ GGe++ y+e le ar ++++ + ++A +lGA+ ++g++ld  e+++ g++e  ayGTAV+
  KOO23653.1   8 EMRGGEITRYNEVLEAARAHVMDGIYQDALALGADEIIGLELDIVEVAN-GLVEFHAYGTAVR 69 
                 689********************************************88.************6 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (149 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       265  (0.0147805); expected 358.6 (0.02)
Passed bias filter:                      240  (0.0133861); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.28s 00:00:00.64 Elapsed: 00:00:00.41
# Mc/sec: 1082.55
//
Query:       KOO23654.1  [L=166]
Description: hypothetical protein Ctob_002721 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (166 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1180  (0.0658152); expected 358.6 (0.02)
Passed bias filter:                      504  (0.0281109); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.43u 0.25s 00:00:00.68 Elapsed: 00:00:00.42
# Mc/sec: 1197.23
//
Query:       KOO23655.1  [L=606]
Description: hypothetical protein Ctob_002720 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.4e-11   43.5   0.0    0.00019   21.2   0.0    3.5  3  LRR_6     Leucine Rich repeat
     0.0034   17.7   0.0        1.2    9.7   0.0    2.8  3  LRR_4     Leucine Rich repeats (2 copies)
      0.008   15.9   0.0         18    5.2   0.0    3.9  4  LRR_8     Leucine rich repeat
  ------ inclusion threshold ------
      0.041   14.2   3.2         18    5.8   0.2    4.9  5  HTH_31    Helix-turn-helix domain


Domain annotation for each model (and alignments):
>> LRR_6  Leucine Rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.2   0.0   4.3e-08   0.00019       5      24 .]     532     551 ..     530     551 .. 0.96
   2 !   13.7   0.0   1.1e-05     0.049       3      24 .]     558     579 ..     556     579 .. 0.94
   3 !    4.6   0.1    0.0089        40       3      13 ..     586     596 ..     584     597 .. 0.89

  Alignments for each domain:
  == domain 1  score: 21.2 bits;  conditional E-value: 4.3e-08
       LRR_6   5 LteLdLsgNdIgDeGaeaLa 24 
                 Lt+Ld+++N Ig eGa aLa
  KOO23655.1 532 LTSLDVAHNPIGPEGAVALA 551
                 9******************8 PP

  == domain 2  score: 13.7 bits;  conditional E-value: 1.1e-05
       LRR_6   3 thLteLdLsgNdIgDeGaeaLa 24 
                 + L++LdLs  ++g +G+ea+a
  KOO23655.1 558 PRLRSLDLSETGMGAVGVEAIA 579
                 67******************98 PP

  == domain 3  score: 4.6 bits;  conditional E-value: 0.0089
       LRR_6   3 thLteLdLsgN 13 
                 ++LteL+Ls +
  KOO23655.1 586 PSLTELNLSMC 596
                 79*******98 PP

>> LRR_4  Leucine Rich repeats (2 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.5   0.0     0.011        50      21      36 ..     528     542 ..     520     545 .. 0.72
   2 !    9.7   0.0   0.00026       1.2       1      32 [.     530     567 ..     530     571 .. 0.78
   3 !    9.4   0.0   0.00033       1.5       1      33 [.     558     596 ..     558     603 .. 0.80

  Alignments for each domain:
  == domain 1  score: 4.5 bits;  conditional E-value: 0.011
                 H-TT--EEE-.-S--- CS
       LRR_4  21 klpnLkeLdLsgNnli 36 
                  ++ L++Ld+ +N +i
  KOO23655.1 528 HFTALTSLDVAHN-PI 542
                 48999****9888.65 PP

  == domain 2  score: 9.7 bits;  conditional E-value: 0.00026
                 SS--EEE--SS---E-S-......HHH-TT--EEE-.- CS
       LRR_4   1 pnLevLdLsnNqltdipl......leklpnLkeLdLsg 32 
                 + L++Ld ++N +   +       le lp L++LdLs+
  KOO23655.1 530 TALTSLDVAHNPIGPEGAvalataLEELPRLRSLDLSE 567
                 5799********884444675555558*********86 PP

  == domain 3  score: 9.4 bits;  conditional E-value: 0.00033
                 SS--EEE--SS---E-S-......HHH-TT--EEE-.-S CS
       LRR_4   1 pnLevLdLsnNqltdipl......leklpnLkeLdLsgN 33 
                 p+L++LdLs + +  ++       le  p+L+eL+Ls +
  KOO23655.1 558 PRLRSLDLSETGMGAVGVeaiaraLETTPSLTELNLSMC 596
                 79********99888888666555668*********654 PP

>> LRR_8  Leucine rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.4   0.0      0.12   5.6e+02      14      30 ..     358     374 ..     356     375 .. 0.75
   2 ?    3.0   0.0      0.02        88      44      61 .]     525     542 ..     520     542 .. 0.82
   3 !    5.2   0.0     0.004        18      43      58 ..     552     567 ..     549     571 .. 0.81
   4 ?    0.9   0.0     0.086   3.9e+02      44      57 ..     581     594 ..     574     596 .. 0.68

  Alignments for each domain:
  == domain 1  score: 0.4 bits;  conditional E-value: 0.12
                 SEE-TTSSTT-TT--EE CS
       LRR_8  14 tslddeaFkglsnLkvL 30 
                 ++l++eaF g + L+ L
  KOO23655.1 358 QDLPPEAFLGAPTLRRL 374
                 56788888888888776 PP

  == domain 2  score: 3.0 bits;  conditional E-value: 0.02
                 GGTT--S-.EEE--SS-- CS
       LRR_8  44 afsgLpsLrsLdLsgNrL 61 
                 a+ ++++L+sLd+ +N++
  KOO23655.1 525 ALPHFTALTSLDVAHNPI 542
                 666889999999999987 PP

  == domain 3  score: 5.2 bits;  conditional E-value: 0.004
                 GGGTT--S-.EEE--S CS
       LRR_8  43 gafsgLpsLrsLdLsg 58 
                  a++ Lp+LrsLdLs 
  KOO23655.1 552 TALEELPRLRSLDLSE 567
                 5788999999999985 PP

  == domain 4  score: 0.9 bits;  conditional E-value: 0.086
                 GGTT--S-.EEE-- CS
       LRR_8  44 afsgLpsLrsLdLs 57 
                 a++  psL++L+Ls
  KOO23655.1 581 ALETTPSLTELNLS 594
                 55556677777766 PP

>> HTH_31  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.0      0.85   3.8e+03      40      54 ..      69      83 ..      66      86 .. 0.86
   2 ?    2.4   0.0     0.044     2e+02       2      24 ..      83     105 ..      82     109 .. 0.90
   3 ?   -1.5   0.0      0.76   3.4e+03      21      36 ..     165     180 ..     165     191 .. 0.82
   4 ?    5.8   0.2    0.0039        18      32      57 ..     352     381 ..     348     385 .. 0.84
   5 ?    1.4   0.0     0.095   4.3e+02      47      62 ..     575     590 ..     573     591 .. 0.89

  Alignments for each domain:
  == domain 1  score: -1.7 bits;  conditional E-value: 0.85
      HTH_31 40 grpspavlealaral 54
                +rps + l+ la al
  KOO23655.1 69 TRPSAGELNELAAAL 83
                489********9997 PP

  == domain 2  score: 2.4 bits;  conditional E-value: 0.044
      HTH_31   2 LGalLralReraGLsqeevAerl 24 
                 L   L ++R + G+ +++vA +l
  KOO23655.1  83 LSKVLNDARHAPGWPLRAVANAL 105
                 788999**************875 PP

  == domain 3  score: -1.5 bits;  conditional E-value: 0.76
      HTH_31  21 AerlgvsestlsrlEq 36 
                 A ++  s++t++ +E 
  KOO23655.1 165 ATASEPSATTWTTIEA 180
                 5677789*******97 PP

  == domain 4  score: 5.8 bits;  conditional E-value: 0.0039
      HTH_31  32 srlEqGrrgrpspa.....vlealaralgld 57 
                 +r+E+ +  +p++a     +l++la+alg+d
  KOO23655.1 352 GRIERRQD-LPPEAflgapTLRRLATALGAD 381
                 58999999.8966667777**********98 PP

  == domain 5  score: 1.4 bits;  conditional E-value: 0.095
      HTH_31  47 lealaralgldpaera 62 
                 +ea+aral ++p++++
  KOO23655.1 575 VEAIARALETTPSLTE 590
                 79*********99875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (606 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       340  (0.0189637); expected 358.6 (0.02)
Passed bias filter:                      263  (0.014669); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.54u 0.26s 00:00:00.80 Elapsed: 00:00:00.42
# Mc/sec: 4341.32
//
Query:       KOO23656.1  [L=321]
Description: glycylpeptide n-tetradecanoyltransferase 2-like protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    9.3e-25   87.3   0.0    1.4e-24   86.8   0.0    1.2  1  NMT              Myristoyl-CoA:protein N-myristoyltransferase
    1.2e-05   25.3   0.0    0.00014   22.0   0.0    2.2  2  Acetyltransf_9   Acetyltransferase (GNAT) domain
    0.00033   20.6   0.0    0.00065   19.6   0.0    1.5  1  Acetyltransf_10  Acetyltransferase (GNAT) domain
     0.0047   16.5   0.0     0.0075   15.8   0.0    1.2  1  NMT_C            Myristoyl-CoA:protein N-myristoyltransferase
     0.0087   16.3   0.0      0.038   14.2   0.0    2.1  2  Acetyltransf_1   Acetyltransferase (GNAT) family
  ------ inclusion threshold ------
      0.021   15.3   0.0      0.061   13.7   0.0    1.9  2  Acetyltransf_7   Acetyltransferase (GNAT) domain


Domain annotation for each model (and alignments):
>> NMT  Myristoyl-CoA:protein N-myristoyltransferase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   86.8   0.0   4.7e-28   1.4e-24      34     150 ..      27     144 ..      13     150 .. 0.93

  Alignments for each domain:
  == domain 1  score: 86.8 bits;  conditional E-value: 4.7e-28
                 HHHHHHHHHHHHSSCTTTSTEEE---HHHHHHHCTSTT--GGGEEEEEETTTTEEEEEEEEEEEEEEET.TEEEEEEEEEEEEE-GGGTTSSHHHHHHH CS
         NMT  34 elkevyelLsenYvedddamfrfkyskeflkWalkppgykkewhvgvrvkkskkLvafisaipvklrvr.kkvlklveinfLcvhkklRskrlapvlik 131
                  ++e+  l+++ Yv  dd+ +r++    +l+W l+ppg+++e +vg+ v+ + +L++f++a+p  lr+r ++++ +ve+  Lc++++ R + l+ vl++
  KOO23656.1  27 IARELPPLIEAAYVATDDDELRLDPPPGMLRWMLSPPGMRDELQVGIGVRGEAQLIGFVAAVPSALRLRgERHQAAVEVSLLCLRRQWRGQGLTRVLLE 125
                 5678899**************************************************************555566************************ PP

                 HHHHHHHTTT--EEEEEES CS
         NMT 132 EitRrvnlkgifqavytag 150
                 E+ Rr+   g+  avyta+
  KOO23656.1 126 ELRRRCDAAGVQLAVYTAS 144
                 *****************97 PP

>> Acetyltransf_9  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.0   0.0   4.6e-08   0.00014      45     121 ..      73     150 ..      57     152 .. 0.90
   2 ?    0.9   0.0      0.15   4.6e+02      67     108 ..     222     263 ..     164     278 .. 0.75

  Alignments for each domain:
  == domain 1  score: 22.0 bits;  conditional E-value: 4.6e-08
                     EEEEETTEEEEEEEEEEEEEEETTEEEEE.EEEEEEEE-CCGTTS-HHHHHHHHHHHHHHHTT--EEEE--SSHHHHH CS
  Acetyltransf_9  45 lgaedngelvgqlallplelnvpGktlka.agvtgVavapehrgrgvlskLlaraleemreegqplsllfPssipiYr 121
                     +g++ + +l+g +a++p  l+++G++ +a   v+  +   + rg+g+ + Ll+++ +++++ g++l++ ++s+++  r
      KOO23656.1  73 IGVRGEAQLIGFVAAVPSALRLRGERHQAaVEVSLLCLRRQWRGQGLTRVLLEELRRRCDAAGVQLAVYTASRPRRVR 150
                     67788999****************88887256999************************************9998766 PP

  == domain 2  score: 0.9 bits;  conditional E-value: 0.15
                     TTEEEEEEEEEEEEE-CCGTTS-HHHHHHHHHHHHHHHTT-- CS
  Acetyltransf_9  67 pGktlkaagvtgVavapehrgrgvlskLlaraleemreegqp 108
                      Gk+l  a++ g a  p    +  l++L++ al+ +r eg+ 
      KOO23656.1 222 WGKRLVQAQLLGLALTPGAPTEETLERLVDGALRTARREGAA 263
                     467777788999999999999999999999999999999876 PP

>> Acetyltransf_10  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.6   0.0   2.2e-07   0.00065      40      92 ..      79     143 ..      65     156 .. 0.72

  Alignments for each domain:
  == domain 1  score: 19.6 bits;  conditional E-value: 2.2e-07
  Acetyltransf_10  40 gkivGvi.......elrdgs.......hisllfVdpeyrgqGigkaLleaveeeaekdgikleltvn 92 
                       +++G++       +lr  +       ++sll+ ++++rgqG+ + Lle+++++++ +g +l++   
       KOO23656.1  79 AQLIGFVaavpsalRLR--GerhqaavEVSLLCLRRQWRGQGLTRVLLEELRRRCDAAGVQLAVYTA 143
                      55555554334322332..134577789***************************998887644444 PP

>> NMT_C  Myristoyl-CoA:protein N-myristoyltransferase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.0   2.5e-06    0.0075     130     177 ..     241     289 ..     202     291 .. 0.83

  Alignments for each domain:
  == domain 1  score: 15.8 bits;  conditional E-value: 2.5e-06
                 THHHHHHHHHHHHHHHHHHCTESEEEEESSTT.GGGCTTTTT-EEEEEE CS
       NMT_C 130 klkkrlkeLvkdalilakkakfDvfnaltlmd.nklfleelkFgagdgk 177
                  ++++l++Lv  al +a++++  vfnal + d  +  l  l F +gdg+
  KOO23656.1 241 PTEETLERLVDGALRTARREGAAVFNALAVGDlSPARLAALGFVQGDGE 289
                 56789**************************955688**********96 PP

>> Acetyltransf_1  Acetyltransferase (GNAT) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.2   0.0   1.3e-05     0.038      40      96 ..      77     138 ..      30     156 .. 0.77
   2 ?   -0.8   0.0      0.59   1.8e+03      42      55 ..     205     218 ..     167     277 .. 0.66

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 1.3e-05
                     ETTEEEEEEEEEEEET.....TSTTEEEEEEEEESGGGTTSSHHHHHHHHHHHHHHHTTESE CS
  Acetyltransf_1  40 edgeliGfisllkipd.....ekggvayieslaVspeyrgkGlGsaLlealeerareegikk 96 
                      + +liGf+ + +         ++  +++  l  ++++rg+Gl + Lle+l +r+   g++ 
      KOO23656.1  77 GEAQLIGFVAAVPSALrlrgeRHQAAVEVSLLCLRRQWRGQGLTRVLLEELRRRCDAAGVQL 138
                     34569****77777777776455666677777889999****************99998833 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 0.59
                     TEEEEEEEEEEEET CS
  Acetyltransf_1  42 geliGfisllkipd 55 
                     g l+Gfis++  p 
      KOO23656.1 205 GPLLGFISFTLLPL 218
                     45777777776665 PP

>> Acetyltransf_7  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.0   2.1e-05     0.061      12      53 ..      79     136 ..      37     158 .. 0.75
   2 ?   -3.5   0.0       4.9   1.5e+04      42      52 ..     223     233 ..     222     248 .. 0.67

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 2.1e-05
                     TEEEEEEEEEEES.........TCTEE.....EEE-GGGTTSSHHHHHHHH...TT..SEE CS
  Acetyltransf_7  12 gkivGfialslld.........aeitr.....laVdpeyrgkGiGraLlea...ae..kgi 53 
                      + +Gf+a+++++         a         l+ + ++rg+G+ r Lle    ++   g+
      KOO23656.1  79 AQLIGFVAAVPSAlrlrgerhqA---AvevslLCLRRQWRGQGLTRVLLEElrrRCdaAGV 136
                     57789999999999988765541...1455679****************963331133443 PP

  == domain 2  score: -3.5 bits;  conditional E-value: 4.9
                     HHHHHHHTTSE CS
  Acetyltransf_7  42 GraLleaaekg 52 
                     G++L++a+  g
      KOO23656.1 223 GKRLVQAQLLG 233
                     89999973344 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (321 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       379  (0.0211389); expected 358.6 (0.02)
Passed bias filter:                      303  (0.0169); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.45u 0.26s 00:00:00.71 Elapsed: 00:00:00.42
# Mc/sec: 2272.54
//
Query:       KOO23657.1  [L=306]
Description: hypothetical protein Ctob_010915 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.3e-06   28.2  33.8    0.00019   22.2   0.5    7.0  8  SHIPPO-rpt  Sperm-tail PG-rich repeat


Domain annotation for each model (and alignments):
>> SHIPPO-rpt  Sperm-tail PG-rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.2   0.1     0.095   1.7e+03      18      29 ..      24      35 ..      12      37 .. 0.83
   2 ?    0.7   0.1     0.065   1.2e+03       2      27 ..      58      88 ..      57      90 .. 0.63
   3 !   22.2   0.5     1e-08   0.00019       2      29 ..     100     132 ..      99     134 .. 0.96
   4 ?   -3.1   0.2         1   1.8e+04       1       5 [.     153     157 ..     153     158 .. 0.74
   5 ?   -2.3   0.0      0.57     1e+04      14      26 ..     170     183 ..     164     186 .. 0.78
   6 !   12.0   1.3   1.7e-05      0.31       1      29 [.     198     231 ..     198     232 .. 0.90
   7 !    8.5   0.5   0.00023         4       2      24 ..     253     282 ..     252     293 .. 0.69
   8 !    4.9   0.4    0.0032        57       2       7 ..     299     304 ..     298     306 .] 0.92

  Alignments for each domain:
  == domain 1  score: 0.2 bits;  conditional E-value: 0.095
  SHIPPO-rpt 18 saPkysfGqrkr 29
                 +P y fG+ +r
  KOO23657.1 24 TSPIYGFGSGTR 35
                589999**9887 PP

  == domain 2  score: 0.7 bits;  conditional E-value: 0.065
  SHIPPO-rpt  2 PGPGtYkpnk....nvpsn.ksaPkysfGqr 27
                PGP  Yk       +v     saP + fG++
  KOO23657.1 58 PGPAVYKHRAavgpQVDGAkASAPLWAFGTA 88
                8998888766666655555556777777766 PP

  == domain 3  score: 22.2 bits;  conditional E-value: 1e-08
  SHIPPO-rpt   2 PGPGtYkpnk....nvpsn.ksaPkysfGqrkr 29 
                 PGPG+Y p      +v+s   saP y +G+++r
  KOO23657.1 100 PGPGAYAPSLglgkQVNSArASAPVYGMGSATR 132
                 *******************************99 PP

  == domain 4  score: -3.1 bits;  conditional E-value: 1
  SHIPPO-rpt   1 lPGPG 5  
                 +PGP 
  KOO23657.1 153 SPGPA 157
                 59996 PP

  == domain 5  score: -2.3 bits;  conditional E-value: 0.57
  SHIPPO-rpt  14 psn.ksaPkysfGq 26 
                 +s+  s+P++ +G 
  KOO23657.1 170 LSKnESQPGWVMGK 183
                 57778899998885 PP

  == domain 6  score: 12.0 bits;  conditional E-value: 1.7e-05
  SHIPPO-rpt   1 lPGPGtYkpnk....nvpsn.ksaPkysfGqrkr 29 
                 +P PG+Y++      +  s  +s+P + fG+ +r
  KOO23657.1 198 TPSPGSYDVTAaigpQNSSTkPSTPRFGFGTSTR 231
                 79*************77777789*******9887 PP

  == domain 7  score: 8.5 bits;  conditional E-value: 0.00023
  SHIPPO-rpt   2 PGPGtYkpnk....nvpsn.ksaPkys..f 24 
                 PGPG+Y + +    +  s+  +a + s  f
  KOO23657.1 253 PGPGAYPIGSmtgaQIRSSnNGATSASwgF 282
                 ******999999884444444666666334 PP

  == domain 8  score: 4.9 bits;  conditional E-value: 0.0032
  SHIPPO-rpt   2 PGPGtY 7  
                 PGPG+Y
  KOO23657.1 299 PGPGAY 304
                 ****** PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (306 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       272  (0.015171); expected 358.6 (0.02)
Passed bias filter:                      206  (0.0114898); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.25s 00:00:00.67 Elapsed: 00:00:00.40
# Mc/sec: 2310.70
//
Query:       KOO23658.1  [L=523]
Description: hypothetical protein Ctob_010914, partial [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (523 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       417  (0.0232584); expected 358.6 (0.02)
Passed bias filter:                      369  (0.0205812); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.49u 0.23s 00:00:00.72 Elapsed: 00:00:00.39
# Mc/sec: 4070.52
//
Query:       KOO23659.1  [L=865]
Description: peptidase c14 caspase catalytic subunit p20 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.3e-57  187.7  34.0      9e-06   25.3   0.0   12.5 12  TPR_1            Tetratricopeptide repeat
    1.4e-49  162.2  35.0    7.6e-05   22.5   0.1   12.6 12  TPR_2            Tetratricopeptide repeat
    1.3e-27   93.7  31.6    0.00082   19.4   0.0   12.3 11  TPR_8            Tetratricopeptide repeat
    5.3e-26   90.0  19.7    4.2e-06   26.3   0.3   10.4 10  TPR_11           TPR repeat
    9.9e-20   69.6  35.5     0.0012   19.5   0.0   12.8 13  TPR_14           Tetratricopeptide repeat
    4.3e-18   64.3  15.6    0.00043   20.5   0.4   10.1  9  TPR_17           Tetratricopeptide repeat
    8.2e-17   61.1  22.4    0.00024   21.2   1.7    7.1  7  TPR_9            Tetratricopeptide repeat
    8.1e-12   45.5  27.7     0.0044   17.5   0.9    7.5  8  TPR_19           Tetratricopeptide repeat
    4.5e-10   39.7  30.9     0.0017   18.6   0.1    8.8  9  TPR_12           Tetratricopeptide repeat
    5.2e-10   39.2  18.7        3.1    7.9   0.0   10.5 11  Fis1_TPR_C       Fis1 C-terminal tetratricopeptide repeat
    8.8e-10   39.1  29.5     0.0065   17.1   0.4    7.8  8  TPR_16           Tetratricopeptide repeat
    1.8e-07   30.4  10.7     0.0078   15.2   0.0    4.6  3  NARP1            NMDA receptor-regulated protein 1
    4.8e-07   30.0  11.9        0.2   12.0   0.2    5.5  5  TPR_20           Tetratricopeptide repeat
    4.5e-06   26.3  14.2          1    9.5   0.0    7.8  8  TPR_7            Tetratricopeptide repeat
    0.00028   20.9   0.0      0.045   13.8   0.0    2.4  2  NDK              Nucleoside diphosphate kinase
    0.00033   20.1   8.7        5.3    6.6   0.0    6.4  7  SHNi-TPR         SHNi-TPR
     0.0034   17.5   3.8         16    5.7   0.0    4.4  4  Toxin_13         Neurotoxin B-IV-like protein
  ------ inclusion threshold ------
      0.023   13.1   0.5       0.13   10.6   0.1    2.2  3  NYD-SP12_N       Spermatogenesis-associated, N-terminal
      0.077   13.1   0.1        0.2   11.8   0.1    1.7  1  Mad3_BUB1_I_2    Putative Mad3/BUB1 like region 1 protein
       0.12   12.2   0.0         17    5.3   0.0    3.1  3  zf-C2H2_9        C2H2 type zinc-finger (1 copy)
       0.14   12.0   3.0         42    4.0   0.1    4.1  4  YL1_C            YL1 nuclear protein C-terminal domain
       0.23   11.9  23.6       0.55   10.7   1.4    5.0  5  BTAD             Bacterial transcriptional activator domain
       0.66    8.9   8.1        6.6    5.6   0.2    3.3  3  ChAPs            ChAPs (Chs5p-Arf1p-binding proteins)
       0.73    9.6   4.4         35    4.2   0.3    4.4  4  Vta1_C           Vta1 C-terminal domain
        1.5    8.8  30.5       0.76    9.7   0.9    8.2  9  TPR_10           Tetratricopeptide repeat
        3.2    8.0  14.8        4.7    7.5   0.4    5.0  5  ANAPC3           Anaphase-promoting complex, cyclosome, subun


Domain annotation for each model (and alignments):
>> TPR_1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.2   0.0     0.059        41      12      33 ..     383     404 ..     383     405 .. 0.88
   2 !   17.8   0.1   3.1e-06    0.0021       3      33 ..     408     438 ..     406     438 .. 0.96
   3 !   25.3   0.0   1.3e-08     9e-06       1      34 []     440     473 ..     440     473 .. 0.97
   4 !   14.6   0.2   3.2e-05     0.022       5      34 .]     501     530 ..     497     530 .. 0.91
   5 !   22.3   0.4   1.2e-07   8.1e-05       4      33 ..     534     563 ..     532     563 .. 0.95
   6 !   24.1   0.0   3.2e-08   2.2e-05       1      34 []     565     598 ..     565     598 .. 0.97
   7 !   14.0   0.0   4.9e-05     0.034       5      34 .]     627     656 ..     624     656 .. 0.92
   8 !   22.5   0.0     1e-07   6.9e-05       4      33 ..     660     689 ..     658     689 .. 0.96
   9 !   14.1   0.1   4.6e-05     0.032       1      34 []     691     724 ..     691     724 .. 0.97
  10 !   17.4   0.2     4e-06    0.0027       9      34 .]     747     772 ..     740     772 .. 0.89
  11 !   16.4   0.0   8.7e-06     0.006       5      33 ..     777     805 ..     775     805 .. 0.90
  12 !   10.2   0.1   0.00078      0.54       1      34 []     807     840 ..     807     840 .. 0.94

  Alignments for each domain:
  == domain 1  score: 4.2 bits;  conditional E-value: 0.059
                 HHTT-HHHHHHHHHHHHHHSTT CS
       TPR_1  12 fklgkydeAleyyekALelnPn 33 
                 fk + yd A+++   AL+l+++
  KOO23659.1 383 FKAEAYDRAVKHLTIALSLDEK 404
                 57788**************986 PP

  == domain 2  score: 17.8 bits;  conditional E-value: 3.1e-06
                 HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT CS
       TPR_1   3 alynlGnayfklgkydeAleyyekALelnPn 33 
                  + n+  ay  l++y +Ale+ +++++l+Pn
  KOO23659.1 408 LYSNRCTAYIALEQYGKALEDADECVRLQPN 438
                 699***************************8 PP

  == domain 3  score: 25.3 bits;  conditional E-value: 1.3e-08
                 HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH CS
       TPR_1   1 akalynlGnayfklgkydeAleyyekALelnPnn 34 
                 ak + ++G ++f++g++++A+   ++ Lel+P+n
  KOO23659.1 440 AKGYLRRGSVFFRMGQLEKAEHVLKEGLELDPSN 473
                 799*****************************98 PP

  == domain 4  score: 14.6 bits;  conditional E-value: 3.2e-05
                 HHHHHHHHHTT-HHHHHHHHHHHHHHSTTH CS
       TPR_1   5 ynlGnayfklgkydeAleyyekALelnPnn 34 
                 + ++   f+ ++y+ A+e  +k ++l+P+n
  KOO23659.1 501 KEKAIEAFNEQNYKGAVELLKKSIKLDPDN 530
                 56788999********************98 PP

  == domain 5  score: 22.3 bits;  conditional E-value: 1.2e-07
                 HHHHHHHHHHTT-HHHHHHHHHHHHHHSTT CS
       TPR_1   4 lynlGnayfklgkydeAleyyekALelnPn 33 
                 + n+++ay+ l++y++Al++ + +++l+P+
  KOO23659.1 534 YSNRAAAYMALEQYEKALADADDCIRLQPT 563
                 99*************************996 PP

  == domain 6  score: 24.1 bits;  conditional E-value: 3.2e-08
                 HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH CS
       TPR_1   1 akalynlGnayfklgkydeAleyyekALelnPnn 34 
                 ak + ++G+a+f+l k+  A +++ek Lel+P+n
  KOO23659.1 565 AKGYSRRGAALFRLDKLGPARDAFEKGLELDPEN 598
                 799*****************************97 PP

  == domain 7  score: 14.0 bits;  conditional E-value: 4.9e-05
                 HHHHHHHHHTT-HHHHHHHHHHHHHHSTTH CS
       TPR_1   5 ynlGnayfklgkydeAleyyekALelnPnn 34 
                 + ++   f+ ++++ A+++ + A+el+P+n
  KOO23659.1 627 KERAIEAFNVQNFKRAEQHLSSAIELDPEN 656
                 568999999*******************97 PP

  == domain 8  score: 22.5 bits;  conditional E-value: 1e-07
                 HHHHHHHHHHTT-HHHHHHHHHHHHHHSTT CS
       TPR_1   4 lynlGnayfklgkydeAleyyekALelnPn 33 
                 + n+++ay+ ++k+d Al++ +++++l+P+
  KOO23659.1 660 YSNRAAAYMAMEKFDLALKDANECVRLQPT 689
                 99**************************96 PP

  == domain 9  score: 14.1 bits;  conditional E-value: 4.6e-05
                 HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH CS
       TPR_1   1 akalynlGnayfklgkydeAleyyekALelnPnn 34 
                 ak + + ++a++++ ++  A e++ k L l+P+n
  KOO23659.1 691 AKGYSRQAAAFLSMADLPAAREACMKGLDLEPDN 724
                 799*****************************98 PP

  == domain 10  score: 17.4 bits;  conditional E-value: 4e-06
                 HHHHHTT-HHHHHHHHHHHHHHSTTH CS
       TPR_1   9 nayfklgkydeAleyyekALelnPnn 34 
                    fk ++y++A+e+   A+ l+P+n
  KOO23659.1 747 TEAFKAQDYEKAVEDLTAAIALDPSN 772
                 56799*******************98 PP

  == domain 11  score: 16.4 bits;  conditional E-value: 8.7e-06
                 HHHHHHHHHTT-HHHHHHHHHHHHHHSTT CS
       TPR_1   5 ynlGnayfklgkydeAleyyekALelnPn 33 
                  n+ +ay  +++y++Ale+ +++++l+P+
  KOO23659.1 777 SNRSVAYTAMQMYEKALEDADECIRLQPT 805
                 566689*********************96 PP

  == domain 12  score: 10.2 bits;  conditional E-value: 0.00078
                 HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH CS
       TPR_1   1 akalynlGnayfklgkydeAleyyekALelnPnn 34 
                 ak + ++++a f+lg+++     y+kA  l+P+n
  KOO23659.1 807 AKGYSRRAAAKFHLGDLQASKLSYSKAWDLEPSN 840
                 799************************8888886 PP

>> TPR_2  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.7   0.0     0.056        38      12      33 ..     383     404 ..     373     405 .. 0.84
   2 !   16.5   0.1   9.1e-06    0.0063       3      33 ..     408     438 ..     406     439 .. 0.94
   3 !   21.1   0.0   3.1e-07   0.00021       1      34 []     440     473 ..     440     473 .. 0.96
   4 !   15.4   0.1   2.1e-05     0.014       6      34 .]     502     530 ..     497     530 .. 0.90
   5 !   20.3   0.5   5.9e-07   0.00041       3      33 ..     533     563 ..     531     564 .. 0.94
   6 !   22.5   0.1   1.1e-07   7.6e-05       1      34 []     565     598 ..     565     598 .. 0.97
   7 !   11.7   0.1   0.00033      0.22       6      34 .]     628     656 ..     624     656 .. 0.91
   8 !   17.2   0.1   5.7e-06    0.0039       4      33 ..     660     689 ..     658     690 .. 0.95
   9 !    7.4   0.1    0.0078       5.4       1      34 []     691     724 ..     691     724 .. 0.96
  10 !   17.3   0.2   5.2e-06    0.0036       5      34 .]     743     772 ..     739     772 .. 0.87
  11 !   17.0   0.0   6.5e-06    0.0045       4      33 ..     776     805 ..     774     806 .. 0.95
  12 !    7.2   0.1    0.0091       6.3       1      34 []     807     840 ..     807     840 .. 0.92

  Alignments for each domain:
  == domain 1  score: 4.7 bits;  conditional E-value: 0.056
       TPR_2  12 yklgdyeeAleafekAleldPn 33 
                 +k+  y++A++++  Al+ld++
  KOO23659.1 383 FKAEAYDRAVKHLTIALSLDEK 404
                 77888**************976 PP

  == domain 2  score: 16.5 bits;  conditional E-value: 9.1e-06
       TPR_2   3 alynlGlayyklgdyeeAleafekAleldPn 33 
                 ++ n+  ay++l +y +Ale+ +++++l Pn
  KOO23659.1 408 LYSNRCTAYIALEQYGKALEDADECVRLQPN 438
                 5899**************************9 PP

  == domain 3  score: 21.1 bits;  conditional E-value: 3.1e-07
       TPR_2   1 aealynlGlayyklgdyeeAleafekAleldPnn 34 
                 a+++ ++G + +++g++e+A++ +++ leldP n
  KOO23659.1 440 AKGYLRRGSVFFRMGQLEKAEHVLKEGLELDPSN 473
                 6899****************************87 PP

  == domain 4  score: 15.4 bits;  conditional E-value: 2.1e-05
       TPR_2   6 nlGlayyklgdyeeAleafekAleldPnn 34 
                 + +  +++ ++y+ A+e+++k+++ldP+n
  KOO23659.1 502 EKAIEAFNEQNYKGAVELLKKSIKLDPDN 530
                 56788999*******************98 PP

  == domain 5  score: 20.3 bits;  conditional E-value: 5.9e-07
       TPR_2   3 alynlGlayyklgdyeeAleafekAleldPn 33 
                  + n++ ay++l +ye+Al++ + +++l P+
  KOO23659.1 533 FYSNRAAAYMALEQYEKALADADDCIRLQPT 563
                 699***************************8 PP

  == domain 6  score: 22.5 bits;  conditional E-value: 1.1e-07
       TPR_2   1 aealynlGlayyklgdyeeAleafekAleldPnn 34 
                 a+++ ++G a+++l+++  A++afek leldP+n
  KOO23659.1 565 AKGYSRRGAALFRLDKLGPARDAFEKGLELDPEN 598
                 689*****************************97 PP

  == domain 7  score: 11.7 bits;  conditional E-value: 0.00033
       TPR_2   6 nlGlayyklgdyeeAleafekAleldPnn 34 
                 +++  +++ +++++A++++  A+eldP+n
  KOO23659.1 628 ERAIEAFNVQNFKRAEQHLSSAIELDPEN 656
                 578889999******************97 PP

  == domain 8  score: 17.2 bits;  conditional E-value: 5.7e-06
       TPR_2   4 lynlGlayyklgdyeeAleafekAleldPn 33 
                 + n++ ay+++ +++ Al++ +++++l P+
  KOO23659.1 660 YSNRAAAYMAMEKFDLALKDANECVRLQPT 689
                 89***************************8 PP

  == domain 9  score: 7.4 bits;  conditional E-value: 0.0078
       TPR_2   1 aealynlGlayyklgdyeeAleafekAleldPnn 34 
                 a+++ +++ a + + d+  A+ea+ k l l+P+n
  KOO23659.1 691 AKGYSRQAAAFLSMADLPAAREACMKGLDLEPDN 724
                 6899****************************98 PP

  == domain 10  score: 17.3 bits;  conditional E-value: 5.2e-06
       TPR_2   5 ynlGlayyklgdyeeAleafekAleldPnn 34 
                    +  ++k++dye+A+e++ +A++ldP n
  KOO23659.1 743 KDAATEAFKAQDYEKAVEDLTAAIALDPSN 772
                 55677789********************87 PP

  == domain 11  score: 17.0 bits;  conditional E-value: 6.5e-06
       TPR_2   4 lynlGlayyklgdyeeAleafekAleldPn 33 
                 + n+  ay +++ ye+Ale+ +++++l P+
  KOO23659.1 776 YSNRSVAYTAMQMYEKALEDADECIRLQPT 805
                 899**************************8 PP

  == domain 12  score: 7.2 bits;  conditional E-value: 0.0091
       TPR_2   1 aealynlGlayyklgdyeeAleafekAleldPnn 34 
                 a+++ +++ a ++lgd++  +  + kA  l+P n
  KOO23659.1 807 AKGYSRRAAAKFHLGDLQASKLSYSKAWDLEPSN 840
                 689************************8888875 PP

>> TPR_8  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.1   0.1    0.0051       3.5      10      33 ..     415     438 ..     408     438 .. 0.94
   2 !   19.4   0.0   1.2e-06   0.00082       1      34 []     440     473 ..     440     473 .. 0.95
   3 !   10.2   0.1    0.0011      0.74      12      34 .]     508     530 ..     502     530 .. 0.90
   4 !   12.0   0.3   0.00027      0.19       4      32 ..     534     562 ..     533     563 .. 0.93
   5 !   11.5   0.0   0.00042      0.29       1      34 []     565     598 ..     565     598 .. 0.93
   6 ?    3.6   0.1      0.14        97      14      34 .]     636     656 ..     620     656 .. 0.91
   7 !   10.2   0.0     0.001      0.72       4      32 ..     660     688 ..     658     689 .. 0.94
   8 ?    4.8   0.1     0.058        40       3      34 .]     693     724 ..     691     724 .. 0.84
   9 !   10.6   0.2   0.00077      0.53      12      34 .]     750     772 ..     744     772 .. 0.89
  10 !   10.2   0.0     0.001       0.7       4      32 ..     776     804 ..     775     805 .. 0.93
  11 ?    6.1   0.1     0.021        15       2      34 .]     808     840 ..     807     840 .. 0.88

  Alignments for each domain:
  == domain 1  score: 8.1 bits;  conditional E-value: 0.0051
                 HHHHTT-HHHHHHHHHHHHHHHHH CS
       TPR_8  10 iylklgdyeeAkeyyekaleldpd 33 
                 +y+ l++y +A e   ++++l+p+
  KOO23659.1 415 AYIALEQYGKALEDADECVRLQPN 438
                 8*********************97 PP

  == domain 2  score: 19.4 bits;  conditional E-value: 1.2e-06
                 CCHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH. CS
       TPR_8   1 aeayynlgsiylklgdyeeAkeyyekaleldpdn 34 
                 a+ y++ gs+ + +g++e+A+ ++++ leldp+n
  KOO23659.1 440 AKGYLRRGSVFFRMGQLEKAEHVLKEGLELDPSN 473
                 678*****************************86 PP

  == domain 3  score: 10.2 bits;  conditional E-value: 0.0011
                 HHTT-HHHHHHHHHHHHHHHHH. CS
       TPR_8  12 lklgdyeeAkeyyekaleldpdn 34 
                 ++ ++y+ A+e ++k ++ldpdn
  KOO23659.1 508 FNEQNYKGAVELLKKSIKLDPDN 530
                 6889*****************97 PP

  == domain 4  score: 12.0 bits;  conditional E-value: 0.00027
                 HHHHHHHHHHTT-HHHHHHHHHHHHHHHH CS
       TPR_8   4 yynlgsiylklgdyeeAkeyyekaleldp 32 
                 y n + +y+ l++ye+A +    +++l+p
  KOO23659.1 534 YSNRAAAYMALEQYEKALADADDCIRLQP 562
                 779999*********************99 PP

  == domain 5  score: 11.5 bits;  conditional E-value: 0.00042
                 CCHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH. CS
       TPR_8   1 aeayynlgsiylklgdyeeAkeyyekaleldpdn 34 
                 a+ y + g +++ l ++  A  ++ek leldp+n
  KOO23659.1 565 AKGYSRRGAALFRLDKLGPARDAFEKGLELDPEN 598
                 567899999***********************86 PP

  == domain 6  score: 3.6 bits;  conditional E-value: 0.14
                 TT-HHHHHHHHHHHHHHHHH. CS
       TPR_8  14 lgdyeeAkeyyekaleldpdn 34 
                  ++++ A++ +  a+eldp+n
  KOO23659.1 636 VQNFKRAEQHLSSAIELDPEN 656
                 57999**************86 PP

  == domain 7  score: 10.2 bits;  conditional E-value: 0.001
                 HHHHHHHHHHTT-HHHHHHHHHHHHHHHH CS
       TPR_8   4 yynlgsiylklgdyeeAkeyyekaleldp 32 
                 y n + +y+ +++++ A +  +++++l+p
  KOO23659.1 660 YSNRAAAYMAMEKFDLALKDANECVRLQP 688
                 779999*********************99 PP

  == domain 8  score: 4.8 bits;  conditional E-value: 0.058
                 HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH. CS
       TPR_8   3 ayynlgsiylklgdyeeAkeyyekaleldpdn 34 
                  y + + + l++ d+ +A e+++k l+l+pdn
  KOO23659.1 693 GYSRQAAAFLSMADLPAAREACMKGLDLEPDN 724
                 56667778888999999*************97 PP

  == domain 9  score: 10.6 bits;  conditional E-value: 0.00077
                 HHTT-HHHHHHHHHHHHHHHHH. CS
       TPR_8  12 lklgdyeeAkeyyekaleldpdn 34 
                 +k +dye+A+e +  a+ ldp+n
  KOO23659.1 750 FKAQDYEKAVEDLTAAIALDPSN 772
                 6789*****************86 PP

  == domain 10  score: 10.2 bits;  conditional E-value: 0.001
                 HHHHHHHHHHTT-HHHHHHHHHHHHHHHH CS
       TPR_8   4 yynlgsiylklgdyeeAkeyyekaleldp 32 
                 y n + +y  ++ ye+A e   ++++l+p
  KOO23659.1 776 YSNRSVAYTAMQMYEKALEDADECIRLQP 804
                 778999*********************99 PP

  == domain 11  score: 6.1 bits;  conditional E-value: 0.021
                 CHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH. CS
       TPR_8   2 eayynlgsiylklgdyeeAkeyyekaleldpdn 34 
                 + y + + + + lgd++++k +y ka +l+p+n
  KOO23659.1 808 KGYSRRAAAKFHLGDLQASKLSYSKAWDLEPSN 840
                 66888889999***************9999975 PP

>> TPR_11  TPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.7   0.0      0.31   2.2e+02       8      34 ..     386     412 ..     382     416 .. 0.82
   2 !   10.2   0.0   0.00069      0.48       3      42 .]     415     454 ..     414     454 .. 0.97
   3 !   13.2   0.0   7.5e-05     0.052       1      28 [.     447     474 ..     447     476 .. 0.95
   4 !   26.3   0.3   6.1e-09   4.2e-06       7      40 ..     510     543 ..     506     545 .. 0.93
   5 !    9.9   0.2   0.00086      0.59       3      41 ..     540     578 ..     540     579 .. 0.95
   6 ?    6.4   0.0      0.01       7.1       2      29 ..     573     600 ..     572     601 .. 0.86
   7 !   14.8   0.0   2.5e-05     0.017      12      41 ..     641     670 ..     637     671 .. 0.88
   8 !   20.2   0.2   4.9e-07   0.00034       5      40 ..     750     785 ..     748     787 .. 0.91
   9 ?    3.9   0.0     0.065        45       3      42 .]     782     821 ..     781     821 .. 0.90
  10 ?    4.2   0.1     0.051        35       5      28 ..     818     841 ..     814     843 .. 0.87

  Alignments for each domain:
  == domain 1  score: 1.7 bits;  conditional E-value: 0.31
      TPR_11   8 GkyeeAieaYkkAlkldPdnaeayynL 34 
                   y+ A++++  Al ld+++  +y+n+
  KOO23659.1 386 EAYDRAVKHLTIALSLDEKSHVLYSNR 412
                 679**************9987777776 PP

  == domain 2  score: 10.2 bits;  conditional E-value: 0.00069
      TPR_11   3 ayyeqGkyeeAieaYkkAlkldPdnaeayynLGlayykqG 42 
                 ay ++ +y +A+e+  + ++l P+ a  y+ +G +++++G
  KOO23659.1 415 AYIALEQYGKALEDADECVRLQPNWAKGYLRRGSVFFRMG 454
                 7999**********************************99 PP

  == domain 3  score: 13.2 bits;  conditional E-value: 7.5e-05
      TPR_11   1 GdayyeqGkyeeAieaYkkAlkldPdna 28 
                 G +++  G++e+A  ++k+ l+ldP+n 
  KOO23659.1 447 GSVFFRMGQLEKAEHVLKEGLELDPSNE 474
                 889***********************96 PP

  == domain 4  score: 26.3 bits;  conditional E-value: 6.1e-09
      TPR_11   7 qGkyeeAieaYkkAlkldPdnaeayynLGlayyk 40 
                  ++y++A+e +kk +kldPdn  +y+n+++ay++
  KOO23659.1 510 EQNYKGAVELLKKSIKLDPDNHIFYSNRAAAYMA 543
                 579*****************************87 PP

  == domain 5  score: 9.9 bits;  conditional E-value: 0.00086
      TPR_11   3 ayyeqGkyeeAieaYkkAlkldPdnaeayynLGlayykq 41 
                 ay+++ +ye+A+++    ++l P+ a  y+ +G+a++++
  KOO23659.1 540 AYMALEQYEKALADADDCIRLQPTWAKGYSRRGAALFRL 578
                 799*********************************987 PP

  == domain 6  score: 6.4 bits;  conditional E-value: 0.01
      TPR_11   2 dayyeqGkyeeAieaYkkAlkldPdnae 29 
                  a++ + k+  A  a++k l+ldP+na+
  KOO23659.1 573 AALFRLDKLGPARDAFEKGLELDPENAT 600
                 57788888888999************97 PP

  == domain 7  score: 14.8 bits;  conditional E-value: 2.5e-05
      TPR_11  12 eAieaYkkAlkldPdnaeayynLGlayykq 41 
                  A ++++ A++ldP+n  +y+n+++ay+++
  KOO23659.1 641 RAEQHLSSAIELDPENHVFYSNRAAAYMAM 670
                 5668999********************975 PP

  == domain 8  score: 20.2 bits;  conditional E-value: 4.9e-07
      TPR_11   5 yeqGkyeeAieaYkkAlkldPdnaeayynLGlayyk 40 
                 ++ ++ye+A+e++ +A++ldP+n  +y+n+ +ay +
  KOO23659.1 750 FKAQDYEKAVEDLTAAIALDPSNQVFYSNRSVAYTA 785
                 67799************************9999965 PP

  == domain 9  score: 3.9 bits;  conditional E-value: 0.065
      TPR_11   3 ayyeqGkyeeAieaYkkAlkldPdnaeayynLGlayykqG 42 
                 ay++ + ye+A+e+  + ++l P+ a  y+ +++a + +G
  KOO23659.1 782 AYTAMQMYEKALEDADECIRLQPTWAKGYSRRAAAKFHLG 821
                 6899999**********************99999987666 PP

  == domain 10  score: 4.2 bits;  conditional E-value: 0.051
      TPR_11   5 yeqGkyeeAieaYkkAlkldPdna 28 
                 + +G++ ++  +Y+kA +l P+na
  KOO23659.1 818 FHLGDLQASKLSYSKAWDLEPSNA 841
                 66899999999************9 PP

>> TPR_14  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.1       6.3   4.3e+03       2      31 ..      96     126 ..      95     132 .. 0.77
   2 ?    3.0   0.0      0.33   2.3e+02      12      37 ..     383     408 ..     372     413 .. 0.83
   3 ?    2.0   0.1      0.71   4.9e+02      10      35 ..     415     440 ..     409     445 .. 0.85
   4 !   19.5   0.0   1.8e-06    0.0012       3      41 ..     442     480 ..     439     482 .. 0.92
   5 !    8.2   0.0    0.0071       4.9      12      35 ..     508     531 ..     502     536 .. 0.87
   6 !    7.8   0.6    0.0097       6.7       7      33 ..     537     563 ..     533     567 .. 0.91
   7 !   14.6   0.1   6.6e-05     0.046       4      37 ..     568     601 ..     565     604 .. 0.90
   8 !    9.4   0.0    0.0031       2.1       7      38 ..     629     660 ..     625     665 .. 0.84
   9 ?    3.8   0.3      0.19   1.3e+02       7      34 ..     663     690 ..     659     699 .. 0.88
  10 ?    4.7   0.2     0.094        65       4      40 ..     694     730 ..     691     733 .. 0.88
  11 !    8.5   0.2    0.0057       3.9       3      38 ..     741     776 ..     740     782 .. 0.88
  12 ?    2.1   0.0      0.67   4.6e+02      19      36 ..     784     801 ..     775     808 .. 0.67
  13 ?    1.5   0.1         1   6.9e+02       4      36 ..     810     842 ..     806     847 .. 0.86

  Alignments for each domain:
  == domain 1  score: -0.9 bits;  conditional E-value: 6.3
      TPR_14   2 eallalaeal.lalGdpdeAiallrralala 31 
                 eal++++  l ++l+d d+  all++ ++++
  KOO23659.1  96 EALAERLNWLsATLDDDDTGHALLEAGVKRD 126
                 6777777776346899999999999998875 PP

  == domain 2  score: 3.0 bits;  conditional E-value: 0.33
      TPR_14  12 lalGdpdeAiallrralalaPddaea 37 
                 + ++ +d+A+++l  al+l+ ++ ++
  KOO23659.1 383 FKAEAYDRAVKHLTIALSLDEKSHVL 408
                 567889*************9998766 PP

  == domain 3  score: 2.0 bits;  conditional E-value: 0.71
      TPR_14  10 allalGdpdeAiallrralalaPdda 35 
                 a+ al+++ +A++ ++++++l+P+ a
  KOO23659.1 415 AYIALEQYGKALEDADECVRLQPNWA 440
                 89999************999999855 PP

  == domain 4  score: 19.5 bits;  conditional E-value: 1.8e-06
      TPR_14   3 allalaeallalGdpdeAiallrralalaPddaeawlll 41 
                  +l++++++++ G++++A+ +l++ l+l+P+++++  +l
  KOO23659.1 442 GYLRRGSVFFRMGQLEKAEHVLKEGLELDPSNEALKKEL 480
                 589*****************************9987765 PP

  == domain 5  score: 8.2 bits;  conditional E-value: 0.0071
      TPR_14  12 lalGdpdeAiallrralalaPdda 35 
                 ++ +++++A++ll++ ++l+Pd+ 
  KOO23659.1 508 FNEQNYKGAVELLKKSIKLDPDNH 531
                 67899*****************85 PP

  == domain 6  score: 7.8 bits;  conditional E-value: 0.0097
      TPR_14   7 laeallalGdpdeAiallrralalaPd 33 
                 +a+a++al+++++A+a ++++++l+P+
  KOO23659.1 537 RAAAYMALEQYEKALADADDCIRLQPT 563
                 799********************9997 PP

  == domain 7  score: 14.6 bits;  conditional E-value: 6.6e-05
      TPR_14   4 llalaeallalGdpdeAiallrralalaPddaea 37 
                 + ++++al++l+++  A++++++ l+l+P++a++
  KOO23659.1 568 YSRRGAALFRLDKLGPARDAFEKGLELDPENATY 601
                 6789***************************986 PP

  == domain 8  score: 9.4 bits;  conditional E-value: 0.0031
      TPR_14   7 laeallalGdpdeAiallrralalaPddaeaw 38 
                 +a   ++ +++++A+++l  a++l+P++ +++
  KOO23659.1 629 RAIEAFNVQNFKRAEQHLSSAIELDPENHVFY 660
                 666778889******************98876 PP

  == domain 9  score: 3.8 bits;  conditional E-value: 0.19
      TPR_14   7 laeallalGdpdeAiallrralalaPdd 34 
                 +a+a++a +++d A++ ++++++l+P+ 
  KOO23659.1 663 RAAAYMAMEKFDLALKDANECVRLQPTW 690
                 799********************99975 PP

  == domain 10  score: 4.7 bits;  conditional E-value: 0.094
      TPR_14   4 llalaeallalGdpdeAiallrralalaPddaeawll 40 
                 + + a+a+l   d+ +A++++ + l+l Pd+ ++  +
  KOO23659.1 694 YSRQAAAFLSMADLPAAREACMKGLDLEPDNTQVKEE 730
                 567899*************************988765 PP

  == domain 11  score: 8.5 bits;  conditional E-value: 0.0057
      TPR_14   3 allalaeallalGdpdeAiallrralalaPddaeaw 38 
                 al+++a   + ++d+++A++ l +a+al+P++++++
  KOO23659.1 741 ALKDAATEAFKAQDYEKAVEDLTAAIALDPSNQVFY 776
                 56778888899********************98765 PP

  == domain 12  score: 2.1 bits;  conditional E-value: 0.67
      TPR_14  19 eAiallrralalaPddae 36 
                 +A++++++al++a +  +
  KOO23659.1 784 TAMQMYEKALEDADECIR 801
                 578888888876655444 PP

  == domain 13  score: 1.5 bits;  conditional E-value: 1
      TPR_14   4 llalaeallalGdpdeAiallrralalaPddae 36 
                 + ++a+a ++lGd++++   + +a +l P++a 
  KOO23659.1 810 YSRRAAAKFHLGDLQASKLSYSKAWDLEPSNAK 842
                 6789************99999999999999876 PP

>> TPR_17  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.1         5   3.4e+03       5      34 .]     398     427 ..     398     427 .. 0.84
   2 !    9.6   0.0    0.0018       1.2       3      33 ..     430     460 ..     429     461 .. 0.94
   3 !   20.5   0.4   6.2e-07   0.00043       1      33 [.     519     551 ..     519     552 .. 0.95
   4 ?    2.8   0.0      0.26   1.8e+02       4      28 ..     556     580 ..     554     585 .. 0.86
   5 ?    3.8   0.0      0.13        93       2      13 ..     588     599 ..     587     602 .. 0.90
   6 !   12.4   0.0   0.00023      0.16       5      33 ..     649     677 ..     647     678 .. 0.92
   7 ?    0.8   0.1       1.2   8.4e+02       4      33 ..     682     711 ..     680     712 .. 0.87
   8 !    8.8   0.1    0.0033       2.3       3      34 .]     763     794 ..     762     794 .. 0.92
   9 ?    4.6   0.0     0.073        51       3      31 ..     797     825 ..     796     827 .. 0.90

  Alignments for each domain:
  == domain 1  score: -1.1 bits;  conditional E-value: 5
      TPR_17   5 aleldPnnadaynnLAelllknGdlmtArq 34 
                 al ld ++ ++y n+ +++  + ++++A++
  KOO23659.1 398 ALSLDEKSHVLYSNRCTAYIALEQYGKALE 427
                 577788888899999999999999999975 PP

  == domain 2  score: 9.6 bits;  conditional E-value: 0.0018
      TPR_17   3 lkaleldPnnadaynnLAelllknGdlmtAr 33 
                  ++++l Pn a+ y  ++ ++ + G+l++A+
  KOO23659.1 430 DECVRLQPNWAKGYLRRGSVFFRMGQLEKAE 460
                 5899*************************97 PP

  == domain 3  score: 20.5 bits;  conditional E-value: 6.2e-07
      TPR_17   1 lylkaleldPnnadaynnLAelllknGdlmtAr 33 
                 l++k+++ldP+n  +y n+A ++  + ++++A+
  KOO23659.1 519 LLKKSIKLDPDNHIFYSNRAAAYMALEQYEKAL 551
                 679****************************97 PP

  == domain 4  score: 2.8 bits;  conditional E-value: 0.26
      TPR_17   4 kaleldPnnadaynnLAelllknGd 28 
                  +++l P+ a+ y  ++ +l ++ +
  KOO23659.1 556 DCIRLQPTWAKGYSRRGAALFRLDK 580
                 79***************99987665 PP

  == domain 5  score: 3.8 bits;  conditional E-value: 0.13
      TPR_17   2 ylkaleldPnna 13 
                 ++k leldP na
  KOO23659.1 588 FEKGLELDPENA 599
                 99*********9 PP

  == domain 6  score: 12.4 bits;  conditional E-value: 0.00023
      TPR_17   5 aleldPnnadaynnLAelllknGdlmtAr 33 
                 a+eldP n ++y n+A ++    +++ A+
  KOO23659.1 649 AIELDPENHVFYSNRAAAYMAMEKFDLAL 677
                 8******************9999998886 PP

  == domain 7  score: 0.8 bits;  conditional E-value: 1.2
      TPR_17   4 kaleldPnnadaynnLAelllknGdlmtAr 33 
                 ++++l P+ a+ y   A ++l+  dl  Ar
  KOO23659.1 682 ECVRLQPTWAKGYSRQAAAFLSMADLPAAR 711
                 899***********9999999988888887 PP

  == domain 8  score: 8.8 bits;  conditional E-value: 0.0033
      TPR_17   3 lkaleldPnnadaynnLAelllknGdlmtArq 34 
                 + a++ldP+n ++y n+ +++     +++A++
  KOO23659.1 763 TAAIALDPSNQVFYSNRSVAYTAMQMYEKALE 794
                 579******************99999999975 PP

  == domain 9  score: 4.6 bits;  conditional E-value: 0.073
      TPR_17   3 lkaleldPnnadaynnLAelllknGdlmt 31 
                  ++++l P+ a+ y  +A +  ++Gdl+ 
  KOO23659.1 797 DECIRLQPTWAKGYSRRAAAKFHLGDLQA 825
                 58*****************9999999875 PP

>> TPR_9  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.1       4.1   2.8e+03      31      44 ..     201     214 ..     200     217 .. 0.80
   2 !   20.3   0.1   6.4e-07   0.00044       4      64 ..     415     475 ..     413     496 .. 0.91
   3 !   14.2   0.2   5.4e-05     0.037       6      60 ..     508     562 ..     502     570 .. 0.92
   4 !   21.2   1.7   3.5e-07   0.00024       3      64 ..     539     600 ..     537     608 .. 0.94
   5 !   11.6   0.6   0.00034      0.23       6      65 ..     634     699 ..     627     714 .. 0.87
   6 !    8.1   0.1    0.0043         3      42      62 ..     752     779 ..     741     788 .. 0.73
   7 !    9.8   0.1    0.0012      0.83       7      62 ..     785     840 ..     779     851 .. 0.86

  Alignments for each domain:
  == domain 1  score: -1.5 bits;  conditional E-value: 4.1
       TPR_9  31 errdRGlllaqlGc 44 
                  +rdRGl  a+ G 
  KOO23659.1 201 QLRDRGLTVAEEGE 214
                 58*****9988776 PP

  == domain 2  score: 20.3 bits;  conditional E-value: 6.4e-07
       TPR_9   4 iaireedweralavverllllaPddpeerrdRGlllaqlGclsaAladLeaylalapdapd 64 
                 ++i  e++ +al+ ++  + l+P+ +  ++ RG + +++G+l++A   L   l+l+p++++
  KOO23659.1 415 AYIALEQYGKALEDADECVRLQPNWAKGYLRRGSVFFRMGQLEKAEHVLKEGLELDPSNEA 475
                 68999***************************************************97655 PP

  == domain 3  score: 14.2 bits;  conditional E-value: 5.4e-05
       TPR_9   6 ireedweralavverllllaPddpeerrdRGlllaqlGclsaAladLeaylalap 60 
                  +e+++  a + +   + l+Pd +  +  R+ +++ l+++++Alad + +++l+p
  KOO23659.1 508 FNEQNYKGAVELLKKSIKLDPDNHIFYSNRAAAYMALEQYEKALADADDCIRLQP 562
                 6788999999999999******************************999999998 PP

  == domain 4  score: 21.2 bits;  conditional E-value: 3.5e-07
       TPR_9   3 aiaireedweralavverllllaPddpeerrdRGlllaqlGclsaAladLeaylalapdapd 64 
                 a+++  e++e+ala ++  + l+P  +  +  RG +l++l+ l  A++++e  l+l+p++++
  KOO23659.1 539 AAYMALEQYEKALADADDCIRLQPTWAKGYSRRGAALFRLDKLGPARDAFEKGLELDPENAT 600
                 67899*****************************************************9876 PP

  == domain 5  score: 11.6 bits;  conditional E-value: 0.00034
       TPR_9   6 ireedweralavverllllaPddpeerrdRGlllaqlGclsaAladLeaylalap......dapda 65 
                  + +++ ra + + + + l+P+ +  +  R+ +++ ++ +  Al+d + +++l+p      ++++a
  KOO23659.1 634 FNVQNFKRAEQHLSSAIELDPENHVFYSNRAAAYMAMEKFDLALKDANECVRLQPtwakgySRQAA 699
                 5678999**********************************************9977776544444 PP

  == domain 6  score: 8.1 bits;  conditional E-value: 0.0043
       TPR_9  42 lGclsaAladLeaylalap.......da 62 
                   ++++A++dL a++al+p       ++
  KOO23659.1 752 AQDYEKAVEDLTAAIALDPsnqvfysNR 779
                 5689***************555555544 PP

  == domain 7  score: 9.8 bits;  conditional E-value: 0.0012
       TPR_9   7 reedweralavverllllaPddpeerrdRGlllaqlGclsaAladLeaylalapda 62 
                   + +e+al+ ++  + l+P  +  +  R+ + ++lG+l+a       + +l+p++
  KOO23659.1 785 AMQMYEKALEDADECIRLQPTWAKGYSRRAAAKFHLGDLQASKLSYSKAWDLEPSN 840
                 557799***********************************998888888888854 PP

>> TPR_19  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.3   0.2    0.0011      0.75       3      46 ..     384     427 ..     382     442 .. 0.93
   2 !    8.5   0.0    0.0041       2.8      35      60 ..     450     475 ..     436     482 .. 0.74
   3 !   17.5   0.9   6.3e-06    0.0044       4      45 ..     510     551 ..     507     552 .. 0.94
   4 ?   -1.7   0.0       6.2   4.3e+03      10      25 ..     584     599 ..     574     602 .. 0.75
   5 !   11.3   0.1   0.00053      0.37       5      45 ..     637     677 ..     634     678 .. 0.94
   6 ?    0.6   0.2       1.2   8.2e+02       3      29 ..     703     729 ..     695     738 .. 0.57
   7 !   10.4   1.2    0.0011      0.73       1      46 [.     749     794 ..     749     798 .. 0.95
   8 ?   -1.1   0.0       4.1   2.8e+03       5      31 ..     821     847 ..     818     851 .. 0.83

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.0011
      TPR_19   3 aegdyaeAlalleqalqedpknaearllLAeallalgqldeAea 46 
                 +++ y++A+++l+ al+ d k+  +  + + a++al q+ +A +
  KOO23659.1 384 KAEAYDRAVKHLTIALSLDEKSHVLYSNRCTAYIALEQYGKALE 427
                 7889***********************************99976 PP

  == domain 2  score: 8.5 bits;  conditional E-value: 0.0041
      TPR_19  35 llalgqldeAealLdalpeedpddar 60 
                  + +gql++Ae +L++ +e dp +++
  KOO23659.1 450 FFRMGQLEKAEHVLKEGLELDPSNEA 475
                 56778888888888888888887544 PP

  == domain 3  score: 17.5 bits;  conditional E-value: 6.3e-06
      TPR_19   4 egdyaeAlalleqalqedpknaearllLAeallalgqldeAe 45 
                 e++y  A++ll++ ++ dp+n     + A a++al q+++A 
  KOO23659.1 510 EQNYKGAVELLKKSIKLDPDNHIFYSNRAAAYMALEQYEKAL 551
                 89***************************************7 PP

  == domain 4  score: -1.7 bits;  conditional E-value: 6.2
      TPR_19  10 Alalleqalqedpkna 25 
                 A +++e+ l+ dp+na
  KOO23659.1 584 ARDAFEKGLELDPENA 599
                 7778888888888876 PP

  == domain 5  score: 11.3 bits;  conditional E-value: 0.00053
      TPR_19   5 gdyaeAlalleqalqedpknaearllLAeallalgqldeAe 45 
                 +++ +A ++l++a++ dp+n     + A a++a+  +d A 
  KOO23659.1 637 QNFKRAEQHLSSAIELDPENHVFYSNRAAAYMAMEKFDLAL 677
                 6899*********************************9986 PP

  == domain 6  score: 0.6 bits;  conditional E-value: 1.2
      TPR_19   3 aegdyaeAlalleqalqedpknaearl 29 
                  + d+ +A ++  + l+ +p+n  ++ 
  KOO23659.1 703 SMADLPAAREACMKGLDLEPDNTQVKE 729
                 344555555555555555555555554 PP

  == domain 7  score: 10.4 bits;  conditional E-value: 0.0011
      TPR_19   1 llaegdyaeAlalleqalqedpknaearllLAeallalgqldeAea 46 
                 +++++dy+ A++ l++a++ dp n+    +   a+ a+  +++A +
  KOO23659.1 749 AFKAQDYEKAVEDLTAAIALDPSNQVFYSNRSVAYTAMQMYEKALE 794
                 5789***************************************975 PP

  == domain 8  score: -1.1 bits;  conditional E-value: 4.1
      TPR_19   5 gdyaeAlalleqalqedpknaearllL 31 
                 gd+++    +++a++ +p na  +++L
  KOO23659.1 821 GDLQASKLSYSKAWDLEPSNAKTKADL 847
                 677777777999********9988776 PP

>> TPR_12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.5   0.0       1.1   7.7e+02       8      35 ..     377     404 ..     371     407 .. 0.68
   2 !   18.6   0.1   2.4e-06    0.0017       5      76 ..     408     471 ..     404     472 .. 0.93
   3 ?   -0.7   0.1       2.5   1.8e+03      20      33 ..     495     508 ..     486     517 .. 0.59
   4 ?   -0.3   0.0       1.9   1.3e+03      60      74 ..     512     526 ..     506     529 .. 0.64
   5 !   17.0   0.4   7.7e-06    0.0053       6      76 ..     534     596 ..     530     597 .. 0.94
   6 ?   -2.6   0.0       9.9   6.8e+03      60      75 ..     638     653 ..     636     655 .. 0.70
   7 !    7.4   0.2    0.0077       5.3       6      33 ..     660     687 ..     657     714 .. 0.80
   8 ?    3.2   0.2      0.16   1.1e+02      47      75 ..     741     769 ..     736     771 .. 0.70
   9 !    8.0   0.3    0.0051       3.5       6      66 ..     776     835 ..     773     837 .. 0.79

  Alignments for each domain:
  == domain 1  score: 0.5 bits;  conditional E-value: 1.1
      TPR_12   8 nlaavlrrlgrydeAlellekaleiarr 35 
                 ++a   ++++ yd A ++l  al + ++
  KOO23659.1 377 EVAIDDFKAEAYDRAVKHLTIALSLDEK 404
                 5566667777788888888888877766 PP

  == domain 2  score: 18.6 bits;  conditional E-value: 2.4e-06
      TPR_12   5 alnnlaavlrrlgrydeAlellekaleiarrllGpdhpltattlrnLgrlyralgryeeAlelleealaiae 76 
                 +++n+ +++ +l++y +Ale  +++++++     p++   a  +   g +++++g++e+A+  l+e l++++
  KOO23659.1 408 LYSNRCTAYIALEQYGKALEDADECVRLQ-----PNW---AKGYLRRGSVFFRMGQLEKAEHVLKEGLELDP 471
                 577999***********************.....*99...889*************************9975 PP

  == domain 3  score: -0.7 bits;  conditional E-value: 2.5
      TPR_12  20 deAlellekaleia 33 
                  e+le+ eka+e++
  KOO23659.1 495 RESLECKEKAIEAF 508
                 35666666666665 PP

  == domain 4  score: -0.3 bits;  conditional E-value: 1.9
      TPR_12  60 ryeeAlelleealai 74 
                 +y+ A+ell++++++
  KOO23659.1 512 NYKGAVELLKKSIKL 526
                 666777777777665 PP

  == domain 5  score: 17.0 bits;  conditional E-value: 7.7e-06
      TPR_12   6 lnnlaavlrrlgrydeAlellekaleiarrllGpdhpltattlrnLgrlyralgryeeAlelleealaiae 76 
                 ++n+aa++++l++y++Al+  + +++++     p++   a  +   g ++++l+++  A++++e+ l++++
  KOO23659.1 534 YSNRAAAYMALEQYEKALADADDCIRLQ-----PTW---AKGYSRRGAALFRLDKLGPARDAFEKGLELDP 596
                 679*************************.....999...889*************************9975 PP

  == domain 6  score: -2.6 bits;  conditional E-value: 9.9
      TPR_12  60 ryeeAlelleealaia 75 
                 +++ A+++l  a++++
  KOO23659.1 638 NFKRAEQHLSSAIELD 653
                 5777888887777775 PP

  == domain 7  score: 7.4 bits;  conditional E-value: 0.0077
      TPR_12   6 lnnlaavlrrlgrydeAlellekaleia 33 
                 ++n+aa++++++++d Al+  +++++++
  KOO23659.1 660 YSNRAAAYMAMEKFDLALKDANECVRLQ 687
                 679*******************999887 PP

  == domain 8  score: 3.2 bits;  conditional E-value: 0.16
      TPR_12  47 tlrnLgrlyralgryeeAlelleealaia 75 
                 +l + ++  +++ +ye+A+e l+ a+a++
  KOO23659.1 741 ALKDAATEAFKAQDYEKAVEDLTAAIALD 769
                 56666777777778888888777777765 PP

  == domain 9  score: 8.0 bits;  conditional E-value: 0.0051
      TPR_12   6 lnnlaavlrrlgrydeAlellekaleiarrllGpdhpltattlrnLgrlyralgryeeAle 66 
                 ++n+ +++++++ y++Ale  +++++++  +  +++   a++ + Lg+l+     y +A++
  KOO23659.1 776 YSNRSVAYTAMQMYEKALEDADECIRLQPTWAKGYS-RRAAAKFHLGDLQASKLSYSKAWD 835
                 5688999******************99966654444.789999999998754447777766 PP

>> Fis1_TPR_C  Fis1 C-terminal tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.0       7.7   5.3e+03      11      31 ..     382     402 ..     378     404 .. 0.79
   2 ?    4.3   0.0     0.063        44      10      34 ..     415     439 ..     412     442 .. 0.91
   3 ?    4.6   0.0     0.051        35      12      38 ..     451     477 ..     450     490 .. 0.81
   4 ?    2.6   0.0       0.2   1.4e+02      15      35 ..     511     531 ..     507     535 .. 0.94
   5 ?    5.8   0.1     0.021        14       8      34 ..     538     564 ..     532     567 .. 0.92
   6 ?   -0.2   0.0       1.5     1e+03      10      34 ..     574     598 ..     572     601 .. 0.89
   7 ?    3.2   0.0      0.14        97      13      35 ..     635     657 ..     630     661 .. 0.91
   8 ?    0.4   0.0       1.1   7.3e+02       8      34 ..     664     690 ..     662     695 .. 0.91
   9 !    7.4   0.0    0.0067       4.7      14      39 ..     704     729 ..     697     735 .. 0.84
  10 ?    3.8   0.0     0.087        60      12      35 ..     750     773 ..     749     777 .. 0.94
  11 !    7.9   0.0    0.0046       3.1       8      34 ..     780     806 ..     774     809 .. 0.93

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 7.7
                 HHHHT-HHHHHHHHHHHHHHT CS
  Fis1_TPR_C  11 hyklgeYseArryvdalLeiE 31 
                  +k   Y++A + +   L+++
  KOO23659.1 382 DFKAEAYDRAVKHLTIALSLD 402
                 578999****99998888765 PP

  == domain 2  score: 4.3 bits;  conditional E-value: 0.063
                 HHHHHT-HHHHHHHHHHHHHHTTS- CS
  Fis1_TPR_C  10 GhyklgeYseArryvdalLeiEPen 34 
                 +++ l +Y +A++ +d + +++P++
  KOO23659.1 415 AYIALEQYGKALEDADECVRLQPNW 439
                 677899*****************99 PP

  == domain 3  score: 4.6 bits;  conditional E-value: 0.051
                 HHHT-HHHHHHHHHHHHHHTTS-HHHH CS
  Fis1_TPR_C  12 yklgeYseArryvdalLeiEPenrQaq 38 
                 +++g+ ++A   ++  Le++P+n+  +
  KOO23659.1 451 FRMGQLEKAEHVLKEGLELDPSNEALK 477
                 69*********************8654 PP

  == domain 4  score: 2.6 bits;  conditional E-value: 0.2
                 T-HHHHHHHHHHHHHHTTS-H CS
  Fis1_TPR_C  15 geYseArryvdalLeiEPenr 35 
                 ++Y+ A ++++  ++++P+n+
  KOO23659.1 511 QNYKGAVELLKKSIKLDPDNH 531
                 79******************7 PP

  == domain 5  score: 5.8 bits;  conditional E-value: 0.021
                 HHHHHHHT-HHHHHHHHHHHHHHTTS- CS
  Fis1_TPR_C   8 AlGhyklgeYseArryvdalLeiEPen 34 
                 A +++ l +Y++A+  +d +++++P +
  KOO23659.1 538 AAAYMALEQYEKALADADDCIRLQPTW 564
                 889999*******************98 PP

  == domain 6  score: -0.2 bits;  conditional E-value: 1.5
                 HHHHHT-HHHHHHHHHHHHHHTTS- CS
  Fis1_TPR_C  10 GhyklgeYseArryvdalLeiEPen 34 
                 + ++l +   Ar   +  Le++Pen
  KOO23659.1 574 ALFRLDKLGPARDAFEKGLELDPEN 598
                 6688999999**************9 PP

  == domain 7  score: 3.2 bits;  conditional E-value: 0.14
                 HHT-HHHHHHHHHHHHHHTTS-H CS
  Fis1_TPR_C  13 klgeYseArryvdalLeiEPenr 35 
                  ++++++A + +   +e++Pen+
  KOO23659.1 635 NVQNFKRAEQHLSSAIELDPENH 657
                 679*******************7 PP

  == domain 8  score: 0.4 bits;  conditional E-value: 1.1
                 HHHHHHHT-HHHHHHHHHHHHHHTTS- CS
  Fis1_TPR_C   8 AlGhyklgeYseArryvdalLeiEPen 34 
                 A +++ + +++ A++ ++ + +++P +
  KOO23659.1 664 AAAYMAMEKFDLALKDANECVRLQPTW 690
                 7899999******************98 PP

  == domain 9  score: 7.4 bits;  conditional E-value: 0.0067
                 HT-HHHHHHHHHHHHHHTTS-HHHHH CS
  Fis1_TPR_C  14 lgeYseArryvdalLeiEPenrQaqs 39 
                 + +   Ar+ +   L +EP+n Q+++
  KOO23659.1 704 MADLPAAREACMKGLDLEPDNTQVKE 729
                 5677789****************985 PP

  == domain 10  score: 3.8 bits;  conditional E-value: 0.087
                 HHHT-HHHHHHHHHHHHHHTTS-H CS
  Fis1_TPR_C  12 yklgeYseArryvdalLeiEPenr 35 
                 +k ++Y++A + + a ++++P+n+
  KOO23659.1 750 FKAQDYEKAVEDLTAAIALDPSNQ 773
                 699*******************96 PP

  == domain 11  score: 7.9 bits;  conditional E-value: 0.0046
                 HHHHHHHT-HHHHHHHHHHHHHHTTS- CS
  Fis1_TPR_C   8 AlGhyklgeYseArryvdalLeiEPen 34 
                 +++++ ++ Y++A++ +d +++++P +
  KOO23659.1 780 SVAYTAMQMYEKALEDADECIRLQPTW 806
                 89***********************98 PP

>> TPR_16  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.8   0.0      0.57   3.9e+02       4      28 ..     379     403 ..     377     413 .. 0.83
   2 !    9.5   0.0    0.0022       1.5       6      67 ..     415     473 ..     410     474 .. 0.91
   3 !   17.1   0.4   9.4e-06    0.0065       3      56 ..     503     553 ..     502     563 .. 0.91
   4 !    8.1   6.2     0.006       4.1       3      67 ..     537     598 ..     536     599 .. 0.95
   5 !    7.7   0.2    0.0084       5.8       3      55 ..     629     679 ..     628     689 .. 0.86
   6 ?    2.2   0.8      0.43     3e+02       3      32 ..     663     689 ..     661     719 .. 0.75
   7 !   14.8   0.7   4.8e-05     0.033       2      47 ..     744     786 ..     743     805 .. 0.77
   8 ?    0.2   0.3       1.8   1.3e+03      31      45 ..     811     825 ..     785     833 .. 0.69

  Alignments for each domain:
  == domain 1  score: 1.8 bits;  conditional E-value: 0.57
      TPR_16   4 araalragdyddAaaaleaalkrdp 28 
                 a + ++a  yd+A++ l++al +d 
  KOO23659.1 379 AIDDFKAEAYDRAVKHLTIALSLDE 403
                 556788999***********99884 PP

  == domain 2  score: 9.5 bits;  conditional E-value: 0.0022
      TPR_16   6 aalragdyddAaaaleaalkrdpssPdaaeAllllgdaalrqgrlaeAaalyraalraapda 67 
                 a++++ +y +A++ +++ ++++   P  a  +l +g +++r g l++A+ ++++ l+ +p++
  KOO23659.1 415 AYIALEQYGKALEDADECVRLQ---PNWAKGYLRRGSVFFRMGQLEKAEHVLKEGLELDPSN 473
                 8999999***************...9999*******************99999999999876 PP

  == domain 3  score: 17.1 bits;  conditional E-value: 9.4e-06
      TPR_16   3 laraalragdyddAaaaleaalkrdpssPdaaeAllllgdaalrqgrlaeAaal 56 
                 +a +a++ ++y  A+++l+  +k+d   Pd++ ++ +++ a+ ++  +++A+a 
  KOO23659.1 503 KAIEAFNEQNYKGAVELLKKSIKLD---PDNHIFYSNRAAAYMALEQYEKALAD 553
                 58899********************...***********************954 PP

  == domain 4  score: 8.1 bits;  conditional E-value: 0.006
      TPR_16   3 laraalragdyddAaaaleaalkrdpssPdaaeAllllgdaalrqgrlaeAaalyraalraapda 67 
                 +a a++++ +y++A+a ++  ++++   P  a  +  +g a++r+  l +A++++++ l+ +p +
  KOO23659.1 537 RAAAYMALEQYEKALADADDCIRLQ---PTWAKGYSRRGAALFRLDKLGPARDAFEKGLELDPEN 598
                 7899*********************...*99**************************99999976 PP

  == domain 5  score: 7.7 bits;  conditional E-value: 0.0084
      TPR_16   3 laraalragdyddAaaaleaalkrdpssPdaaeAllllgdaalrqgrlaeAa.a 55 
                 +a +a++ +++ +A+  l  a+++d   P+++ ++ +++ a+ +   +++A+ +
  KOO23659.1 629 RAIEAFNVQNFKRAEQHLSSAIELD---PENHVFYSNRAAAYMAMEKFDLALkD 679
                 68899********************...99999999999999888888888744 PP

  == domain 6  score: 2.2 bits;  conditional E-value: 0.43
      TPR_16   3 laraalragdyddAaaaleaalkrdpssPd 32 
                 +a a+++  ++d A++ +++ ++++   P 
  KOO23659.1 663 RAAAYMAMEKFDLALKDANECVRLQ---PT 689
                 7999**************9999999...65 PP

  == domain 7  score: 14.8 bits;  conditional E-value: 4.8e-05
      TPR_16   2 alaraalragdyddAaaaleaalkrdpssPdaaeAllllgdaalrq 47 
                 ++a++a++a+dy++A++ l+aa+++dps  +   ++ ++ +a+ + 
  KOO23659.1 744 DAATEAFKAQDYEKAVEDLTAAIALDPSNQV---FYSNRSVAYTAM 786
                 689***********************55544...666666666655 PP

  == domain 8  score: 0.2 bits;  conditional E-value: 1.8
      TPR_16  31 PdaaeAllllgdaal 45 
                 +++a+A ++lgd+ +
  KOO23659.1 811 SRRAAAKFHLGDLQA 825
                 448999999999876 PP

>> NARP1  NMDA receptor-regulated protein 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.0   1.1e-05    0.0078     202     258 ..     416     472 ..     354     499 .. 0.80
   2 ?    3.3   4.1     0.046        32     199     275 ..     538     615 ..     474     691 .. 0.63
   3 !   10.9   0.2   0.00022      0.15     200     247 ..     781     828 ..     733     838 .. 0.79

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 1.1e-05
                 HHHHT-SHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHCTTT CS
       NARP1 202 ydklgsrekAleyidkaiehtptlvelyltKarilkhaGdlkkAaevmeearklDla 258
                 y  l+++ kAle  d++++ +p+    yl+++ ++ ++G+l+kA +v++e+ +lD  
  KOO23659.1 416 YIALEQYGKALEDADECVRLQPNWAKGYLRRGSVFFRMGQLEKAEHVLKEGLELDPS 472
                 66789999**********************************************975 PP

  == domain 2  score: 3.3 bits;  conditional E-value: 0.046
                 HHHHHHHT-SHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHCTTT-.HHHHHHHHHHHHH..TT- CS
       NARP1 199 AqhydklgsrekAleyidkaiehtptlvelyltKarilkhaGdlkkAaevmeearklDlaD.RyiNskcakymLr..ade 275
                 A  y  l+++ekAl   d +i+ +pt    y +++  l +   l  A ++ e++ +lD +   y+   c+k+ L+   d 
  KOO23659.1 538 AAAYMALEQYEKALADADDCIRLQPTWAKGYSRRGAALFRLDKLGPARDAFEKGLELDPENaTYVR--CTKQELQlvMDA 615
                 445667888888888888888888888888888888888888888888888888888854415664..444444322232 PP

  == domain 3  score: 10.9 bits;  conditional E-value: 0.00022
                 HHHHHHT-SHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHTT-HHHHHH CS
       NARP1 200 qhydklgsrekAleyidkaiehtptlvelyltKarilkhaGdlkkAae 247
                   y  ++ +ekAle  d++i+ +pt    y ++a    h Gdl++   
  KOO23659.1 781 VAYTAMQMYEKALEDADECIRLQPTWAKGYSRRAAAKFHLGDLQASKL 828
                 34889999***********************************98755 PP

>> TPR_20  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.1       2.6   1.8e+03      23      54 ..     373     404 ..     369     434 .. 0.79
   2 ?    0.4   0.1       1.2   8.5e+02      25      61 ..     409     445 ..     385     450 .. 0.79
   3 !   12.0   0.2   0.00029       0.2       7      61 ..     516     570 ..     510     590 .. 0.89
   4 !    9.0   0.5    0.0024       1.7       9      63 ..     644     698 ..     640     713 .. 0.93
   5 !   11.3   0.1   0.00049      0.34       6      63 ..     757     814 ..     751     819 .. 0.92

  Alignments for each domain:
  == domain 1  score: -0.7 bits;  conditional E-value: 2.6
      TPR_20  23 darldlAlallaagryeeAleqLleilkrdrk 54 
                 d+  ++A  +++a+ y+ A+++L   l+ d k
  KOO23659.1 373 DTLKEVAIDDFKAEAYDRAVKHLTIALSLDEK 404
                 55668899999999999999999877776655 PP

  == domain 2  score: 0.4 bits;  conditional E-value: 1.2
      TPR_20  25 rldlAlallaagryeeAleqLleilkrdrkweddaar 61 
                   +  +a++a ++y +Ale   e ++ + +w+++  r
  KOO23659.1 409 YSNRCTAYIALEQYGKALEDADECVRLQPNWAKGYLR 445
                 55666789999*******************9999777 PP

  == domain 3  score: 12.0 bits;  conditional E-value: 0.00029
      TPR_20   7 elaeleaalaanpddldarldlAlallaagryeeAleqLleilkrdrkweddaar 61 
                  ++ l++ ++ +pd++    + A a++a ++ye+Al+   + ++ + +w+++  r
  KOO23659.1 516 AVELLKKSIKLDPDNHIFYSNRAAAYMALEQYEKALADADDCIRLQPTWAKGYSR 570
                 67889999******************************99999999999988766 PP

  == domain 4  score: 9.0 bits;  conditional E-value: 0.0024
      TPR_20   9 aeleaalaanpddldarldlAlallaagryeeAleqLleilkrdrkweddaarkq 63 
                 + l +a++ +p+++    + A a++a ++ + Al+   e ++ + +w+++  r++
  KOO23659.1 644 QHLSSAIELDPENHVFYSNRAAAYMAMEKFDLALKDANECVRLQPTWAKGYSRQA 698
                 578999******************************************9999875 PP

  == domain 5  score: 11.3 bits;  conditional E-value: 0.00049
      TPR_20   6 pelaeleaalaanpddldarldlAlallaagryeeAleqLleilkrdrkweddaarkq 63 
                 + +++l aa+a +p++     + + a+ a + ye+Ale   e ++ + +w+++  r++
  KOO23659.1 757 KAVEDLTAAIALDPSNQVFYSNRSVAYTAMQMYEKALEDADECIRLQPTWAKGYSRRA 814
                 57899*********************************************99988875 PP

>> TPR_7  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.5   0.0       2.3   1.6e+03      15      29 ..     388     402 ..     384     407 .. 0.80
   2 !    9.5   0.0    0.0015         1       2      35 ..     443     474 ..     443     475 .. 0.91
   3 ?    5.5   0.0     0.029        20      11      31 ..     509     529 ..     507     532 .. 0.81
   4 ?    2.9   0.4       0.2   1.4e+02       2      19 ..     534     551 ..     534     553 .. 0.90
   5 ?   -1.4   0.0       4.7   3.2e+03      11      33 ..     635     655 ..     633     656 .. 0.80
   6 ?   -2.2   0.1       8.3   5.7e+03       2      19 ..     660     677 ..     660     678 .. 0.86
   7 !    7.9   0.0    0.0051       3.5      11      34 ..     751     772 ..     747     774 .. 0.85
   8 ?    1.6   0.1      0.51   3.5e+02       4      20 ..     778     794 ..     776     801 .. 0.77

  Alignments for each domain:
  == domain 1  score: -0.5 bits;  conditional E-value: 2.3
       TPR_7  15 yeeAielyeqsLalt 29 
                 y++A+++++ +L l+
  KOO23659.1 388 YDRAVKHLTIALSLD 402
                 99*******966655 PP

  == domain 2  score: 9.5 bits;  conditional E-value: 0.0015
       TPR_7   2 LlnLarlysrlGdyeeAielyeqsLaltkdpeda 35 
                 +l+ +++++r+G+ e+A+ ++++  +l+ dp+++
  KOO23659.1 443 YLRRGSVFFRMGQLEKAEHVLKE--GLELDPSNE 474
                 56789******************..*****9975 PP

  == domain 3  score: 5.5 bits;  conditional E-value: 0.029
       TPR_7  11 rlGdyeeAielyeqsLaltkd 31 
                 ++++y+ A+el+++s+ l+ d
  KOO23659.1 509 NEQNYKGAVELLKKSIKLDPD 529
                 679***********7776665 PP

  == domain 4  score: 2.9 bits;  conditional E-value: 0.2
       TPR_7   2 LlnLarlysrlGdyeeAi 19 
                 ++n a +y +l +ye+A+
  KOO23659.1 534 YSNRAAAYMALEQYEKAL 551
                 679999**********97 PP

  == domain 5  score: -1.4 bits;  conditional E-value: 4.7
       TPR_7  11 rlGdyeeAielyeqsLaltkdpe 33 
                 +++++++A++++    a++ dpe
  KOO23659.1 635 NVQNFKRAEQHLSS--AIELDPE 655
                 67999***999999..7777776 PP

  == domain 6  score: -2.2 bits;  conditional E-value: 8.3
       TPR_7   2 LlnLarlysrlGdyeeAi 19 
                 ++n a +y ++ +++ A+
  KOO23659.1 660 YSNRAAAYMAMEKFDLAL 677
                 679999*****9999886 PP

  == domain 7  score: 7.9 bits;  conditional E-value: 0.0051
       TPR_7  11 rlGdyeeAielyeqsLaltkdped 34 
                 + +dye+A+e +++  a++ dp++
  KOO23659.1 751 KAQDYEKAVEDLTA--AIALDPSN 772
                 579***********..88888775 PP

  == domain 8  score: 1.6 bits;  conditional E-value: 0.51
       TPR_7   4 nLarlysrlGdyeeAie 20 
                 n  ++y +++ ye+A+e
  KOO23659.1 778 NRSVAYTAMQMYEKALE 794
                 55678888888888876 PP

>> NDK  Nucleoside diphosphate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.8   0.0   6.5e-05     0.045      85     129 ..      49     104 ..      12     108 .. 0.78
   2 ?    4.6   0.0     0.044        31       2      55 ..     180     237 ..     179     245 .. 0.79

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 6.5e-05
                 HHH--SSTTTSSTTSHHHHH-SSS...........TT-SEEE-SSHHHHHHHHHHH CS
         NDK  85 eliGatnpaeaapgtiRadfgvsl...........geNlvHgSdseesaereiklf 129
                 +++Gat+pa a++g++R++    +           g+N vHgS+s  +a  e   +
  KOO23659.1  49 KVLGATDPATAEAGSMRHEILQRWqalglaskpnvGDNGVHGSASAFEALAERLNW 104
                 799**************99998888888888888888********98887776555 PP

  == domain 2  score: 4.6 bits;  conditional E-value: 0.044
                 EEEEEE-HHHHHTT-HHHHHHHHHHHT-EEEEE....EEECE-HHHHHHHTGGGTTST CS
         NDK   2 rtlvliKPdavkrgligeiisrleekglkival....kmlrlteeqaeehYaehkgkp 55 
                 +++v iKP+a +  + +    +l+++gl++++      ++ l+++++++hY + ++k+
  KOO23659.1 180 QAFVFIKPHANNLAVRELLKGQLRDRGLTVAEEgeidAVTMLSRKLVDNHYYSIANKA 237
                 799*******9888888888899*******9862222456789999999998877775 PP

>> SHNi-TPR  SHNi-TPR
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.0       3.6   2.5e+03      14      33 ..     385     404 ..     382     407 .. 0.80
   2 ?    5.3   0.0     0.019        13      15      31 ..     420     436 ..     417     438 .. 0.93
   3 ?   -2.2   0.0       4.4     3e+03      16      30 ..     512     526 ..     510     526 .. 0.69
   4 ?    2.1   0.0       0.2   1.4e+02      15      31 ..     545     561 ..     542     563 .. 0.91
   5 !    6.6   0.0    0.0076       5.3      15      31 ..     671     687 ..     668     689 .. 0.91
   6 ?    3.0   0.2       0.1        70      17      30 ..     755     768 ..     752     768 .. 0.88
   7 ?    1.6   0.0      0.28     2e+02      17      31 ..     789     803 ..     788     805 .. 0.92

  Alignments for each domain:
  == domain 1  score: -2.0 bits;  conditional E-value: 3.6
    SHNi-TPR  14 nenFpqAveDlrkaLeLreq 33 
                 +e ++ Av+ l+ aL L e+
  KOO23659.1 385 AEAYDRAVKHLTIALSLDEK 404
                 688999***99999999766 PP

  == domain 2  score: 5.3 bits;  conditional E-value: 0.019
    SHNi-TPR  15 enFpqAveDlrkaLeLr 31 
                 e++  A+eD ++++ L+
  KOO23659.1 420 EQYGKALEDADECVRLQ 436
                 99************998 PP

  == domain 3  score: -2.2 bits;  conditional E-value: 4.4
    SHNi-TPR  16 nFpqAveDlrkaLeL 30 
                 n++ Ave l+k+++L
  KOO23659.1 512 NYKGAVELLKKSIKL 526
                 677777777777765 PP

  == domain 4  score: 2.1 bits;  conditional E-value: 0.2
    SHNi-TPR  15 enFpqAveDlrkaLeLr 31 
                 e+++ A+ D + ++ L+
  KOO23659.1 545 EQYEKALADADDCIRLQ 561
                 9************9998 PP

  == domain 5  score: 6.6 bits;  conditional E-value: 0.0076
    SHNi-TPR  15 enFpqAveDlrkaLeLr 31 
                 e+F+ A++D ++++ L+
  KOO23659.1 671 EKFDLALKDANECVRLQ 687
                 9*************998 PP

  == domain 6  score: 3.0 bits;  conditional E-value: 0.1
    SHNi-TPR  17 FpqAveDlrkaLeL 30 
                 ++ AveDl++a++L
  KOO23659.1 755 YEKAVEDLTAAIAL 768
                 7889*****99987 PP

  == domain 7  score: 1.6 bits;  conditional E-value: 0.28
    SHNi-TPR  17 FpqAveDlrkaLeLr 31 
                 ++ A+eD ++++ L+
  KOO23659.1 789 YEKALEDADECIRLQ 803
                 788*********998 PP

>> Toxin_13  Neurotoxin B-IV-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.4   0.1      0.26   1.8e+02      18      31 ..     427     440 ..     410     448 .. 0.73
   2 ?    5.7   0.0     0.023        16       7      32 ..     539     566 ..     535     576 .. 0.67
   3 ?    2.8   0.0      0.18   1.3e+02       7      38 ..     665     698 ..     661     717 .. 0.72
   4 ?    3.9   0.0     0.086        59      20      35 ..     796     811 ..     782     820 .. 0.78

  Alignments for each domain:
  == domain 1  score: 2.4 bits;  conditional E-value: 0.26
                 HHHHHH--TTGGGT CS
    Toxin_13  18 kkyddcikcqGkwa 31 
                    d+c++ q  wa
  KOO23659.1 427 EDADECVRLQPNWA 440
                 4579*********9 PP

  == domain 2  score: 5.7 bits;  conditional E-value: 0.023
                 TTTTHHHHHHH..HHHHHH--TTGGGTT CS
    Toxin_13   7 aayPacenncr..kkyddcikcqGkwaG 32 
                 aay a e   +     ddci+ q  wa 
  KOO23659.1 539 AAYMALEQYEKalADADDCIRLQPTWAK 566
                 56666665433114679*********94 PP

  == domain 3  score: 2.8 bits;  conditional E-value: 0.18
                 TTTTHHHHH..HHHHHHHH--TTGGGTT-HHHHH CS
    Toxin_13   7 aayPacenn..crkkyddcikcqGkwaGkrGkca 38 
                 aay a e      k  ++c++ q  wa    + a
  KOO23659.1 665 AAYMAMEKFdlALKDANECVRLQPTWAKGYSRQA 698
                 666676653225688899********96544444 PP

  == domain 4  score: 3.9 bits;  conditional E-value: 0.086
                 HHHH--TTGGGTT-HH CS
    Toxin_13  20 yddcikcqGkwaGkrG 35 
                  d+ci+ q  wa    
  KOO23659.1 796 ADECIRLQPTWAKGYS 811
                 69*********95444 PP

>> NYD-SP12_N  Spermatogenesis-associated, N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.0       1.1   7.5e+02     231     270 ..     413     452 ..     408     470 .. 0.87
   2 ?   -1.1   0.1      0.67   4.6e+02     173     278 ..     441     551 ..     432     560 .. 0.61
   3 ?   10.6   0.1   0.00019      0.13     232     279 ..     665     711 ..     657     717 .. 0.85

  Alignments for each domain:
  == domain 1  score: -1.8 bits;  conditional E-value: 1.1
  NYD-SP12_N 231 vtcylrmrkpdlalnhahrsivlnpayfrnhlrqaavfrc 270
                  t y+ + +   al+ a   + l+p + + +lr+ +vf  
  KOO23659.1 413 CTAYIALEQYGKALEDADECVRLQPNWAKGYLRRGSVFFR 452
                 578999999999***********************99854 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 0.67
  NYD-SP12_N 173 qvalkdasscyrqkkyavaaGqfrtalelcskGaalgkpfeasaediss.va...sfietklvtcy.lrmrkpdlalnhahrsivlnpayfrnhlrqaa 266
                 +  l+  s ++r  +   a   ++  lel     al k +ea  + i+  +a     +e k  +   +  ++   a++  ++si l+p +   +  +aa
  KOO23659.1 441 KGYLRRGSVFFRMGQLEKAEHVLKEGLELDPSNEALKKELEAVMNAIAErMArqrESLECKEKAIEaFNEQNYKGAVELLKKSIKLDPDNHIFYSNRAA 539
                 555556666666666666666666666666666666666555544444312211133444433332123344455677778999999999999999999 PP

  NYD-SP12_N 267 vfrcleryseaa 278
                  + +le+y +a 
  KOO23659.1 540 AYMALEQYEKAL 551
                 999999998875 PP

  == domain 3  score: 10.6 bits;  conditional E-value: 0.00019
  NYD-SP12_N 232 tcylrmrkpdlalnhahrsivlnpayfrnhlrqaavfrcleryseaar 279
                 + y+ m k dlal  a   + l+p++ + + rqaa f ++     aar
  KOO23659.1 665 AAYMAMEKFDLALKDANECVRLQPTWAKGYSRQAAAFLSMADLP-AAR 711
                 78***********************************8876543.444 PP

>> Mad3_BUB1_I_2  Putative Mad3/BUB1 like region 1 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.1    0.0003       0.2      52     114 ..     446     508 ..     439     517 .. 0.81

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 0.0003
  Mad3_BUB1_I_2  52 lsryFlkkgkkeaalfiLqegiknkvydkeilkeelksikkl.ekklseeeakkllkpkkirlf 114
                      + F + g+ e+a+ +L+eg++ +  + e lk+el+ + +  +++++ + +    k k i +f
     KOO23659.1 446 RGSVFFRMGQLEKAEHVLKEGLELDPSN-EALKKELEAVMNAiAERMARQRESLECKEKAIEAF 508
                    556799*******************998.99*****9987652667777777777777777776 PP

>> zf-C2H2_9  C2H2 type zinc-finger (1 copy)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.3   0.0     0.025        17      10      42 ..     384     416 ..     380     424 .. 0.85
   2 ?   -2.6   0.0       7.7   5.3e+03      30      49 ..     529     548 ..     519     550 .. 0.75
   3 ?    2.9   0.0      0.15     1e+02      13      52 ..     638     677 ..     632     680 .. 0.83

  Alignments for each domain:
  == domain 1  score: 5.3 bits;  conditional E-value: 0.025
                 B-SSHHHHHHHHHHHTSSS--HHHHHHHHHT-S CS
   zf-C2H2_9  10 kfnswkdlseHilsaasksdaeHvmWLNRnisk 42 
                 k +++++  +H+ +a s  +++Hv + NR  ++
  KOO23659.1 384 KAEAYDRAVKHLTIALSLDEKSHVLYSNRCTAY 416
                 667899999********************8665 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 7.7
                 -HHHHHHHHHT-SS---HHH CS
   zf-C2H2_9  30 aeHvmWLNRniskkrlskdE 49 
                  +H+ + NR  ++  l++ E
  KOO23659.1 529 DNHIFYSNRAAAYMALEQYE 548
                 36999999998888777755 PP

  == domain 3  score: 2.9 bits;  conditional E-value: 0.15
                 SHHHHHHHHHHHTSSS--HHHHHHHHHT-SS---HHHHHH CS
   zf-C2H2_9  13 swkdlseHilsaasksdaeHvmWLNRniskkrlskdELek 52 
                 ++k+  +H+ sa +   ++Hv + NR  ++  ++k +L+ 
  KOO23659.1 638 NFKRAEQHLSSAIELDPENHVFYSNRAAAYMAMEKFDLAL 677
                 677778999999999999********99999998877765 PP

>> YL1_C  YL1 nuclear protein C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.0   0.1     0.062        42       9      20 ..      20      31 ..      18      32 .. 0.93
   2 ?    0.3   0.0      0.87     6e+02      13      22 ..     527     536 ..     526     539 .. 0.87
   3 ?    0.9   0.0      0.58     4e+02      13      22 ..     653     662 ..     652     665 .. 0.87
   4 ?    3.0   0.0      0.13        89      13      22 ..     769     778 ..     768     781 .. 0.88

  Alignments for each domain:
  == domain 1  score: 4.0 bits;  conditional E-value: 0.062
       YL1_C  9 AkYrDPkTgLpY 20
                AkY+ P + ++Y
  KOO23659.1 20 AKYTSPGSSIYY 31
                9**********9 PP

  == domain 2  score: 0.3 bits;  conditional E-value: 0.87
       YL1_C  13 DPkTgLpYan 22 
                 DP + + Y+n
  KOO23659.1 527 DPDNHIFYSN 536
                 *********9 PP

  == domain 3  score: 0.9 bits;  conditional E-value: 0.58
       YL1_C  13 DPkTgLpYan 22 
                 DP + + Y+n
  KOO23659.1 653 DPENHVFYSN 662
                 *********9 PP

  == domain 4  score: 3.0 bits;  conditional E-value: 0.13
       YL1_C  13 DPkTgLpYan 22 
                 DP++++ Y+n
  KOO23659.1 769 DPSNQVFYSN 778
                 *********9 PP

>> BTAD  Bacterial transcriptional activator domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.7   0.1      0.94   6.4e+02      59     118 ..     369     428 ..     346     436 .. 0.71
   2 ?    4.3   1.7     0.073        50      51     117 ..     429     499 ..     370     533 .. 0.77
   3 ?    6.7   2.9     0.013       8.9      20     117 ..     454     552 ..     444     561 .. 0.75
   4 ?    3.2   1.5      0.16   1.1e+02      48     118 ..     610     679 ..     565     687 .. 0.76
   5 ?   10.7   1.4    0.0008      0.55      46     117 ..     723     794 ..     691     803 .. 0.87

  Alignments for each domain:
  == domain 1  score: 0.7 bits;  conditional E-value: 0.94
                 HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHH CS
        BTAD  59 elrlealealaeaelrlGraeealaelealvaehPlrErlhrqlmrAlarsGrqaeALev 118
                 + +++ l++ a  +++ + +++a++ l+ +++++     l+    +A+ ++++ ++ALe 
  KOO23659.1 369 KTAVDTLKEVAIDDFKAEAYDRAVKHLTIALSLDEKSHVLYSNRCTAYIALEQYGKALED 428
                 556666667777777788888888888888888888888888888888888888888875 PP

  == domain 2  score: 4.3 bits;  conditional E-value: 0.073
                 HHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHH...HHHHH.HTT-HHHHHH CS
        BTAD  51 eaererleelrlealealaeaelrlGraeealaelealvaehPlrErlhrql...mrAla.rsGrqaeALe 117
                  +e++rl+    + + ++    +r+G+ e+a   l++ ++++P +E+l ++l   m A a r+ rq e Le
  KOO23659.1 429 ADECVRLQPNWAKGYLRRGSVFFRMGQLEKAEHVLKEGLELDPSNEALKKELeavMNAIAeRMARQRESLE 499
                 45677777777777778888889999999999999999999999999976533338887657888888876 PP

  == domain 3  score: 6.7 bits;  conditional E-value: 0.013
                 T-HHHHHHHHHHHHTT..--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHH CS
        BTAD  20 gdpeeaaelleaAlal..wrGpaladleagewleaererleelrlealealaeaelrlGraeealaelealvaehPlrErlhrqlmrAlarsGrqaeAL 116
                 g+ e+a   l+++l+l   ++ + ++lea + + aer + +++ le+ e+ +e  +    ++ a++ l++ ++++P +  ++    +A++++++ ++AL
  KOO23659.1 454 GQLEKAEHVLKEGLELdpSNEALKKELEAVMNAIAERMARQRESLECKEKAIE-AFNEQNYKGAVELLKKSIKLDPDNHIFYSNRAAAYMALEQYEKAL 551
                 555555566666655521233344455556666677777778889********.777789999**********************************99 PP

                 H CS
        BTAD 117 e 117
                 +
  KOO23659.1 552 A 552
                 7 PP

  == domain 4  score: 3.2 bits;  conditional E-value: 0.16
                 TTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHH CS
        BTAD  48 ewleaererleelrlealealaeaelrlGraeealaelealvaehPlrErlhrqlmrAlarsGrqaeALev 118
                 + + +++++ +e+ le  e+ +e  + +   ++a + l+++++++P +  ++    +A++++++   AL+ 
  KOO23659.1 610 QLVMDAIAQRKEESLEFKERAIE-AFNVQNFKRAEQHLSSAIELDPENHVFYSNRAAAYMAMEKFDLALKD 679
                 45666778888889999999998.89999999******************************999999876 PP

  == domain 5  score: 10.7 bits;  conditional E-value: 0.0008
                 TSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHH CS
        BTAD  46 agewleaererleelrlealealaeaelrlGraeealaelealvaehPlrErlhrqlmrAlarsGrqaeALe 117
                 +++ ++ e++r+e     al++ a + ++  ++e+a+++l+a++a++P +  ++     A+ ++   ++ALe
  KOO23659.1 723 DNTQVKEELRRVEIAESLALKDAATEAFKAQDYEKAVEDLTAAIALDPSNQVFYSNRSVAYTAMQMYEKALE 794
                 36788899999999999999999999************************************9999999997 PP

>> ChAPs  ChAPs (Chs5p-Arf1p-binding proteins)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.3   0.0      0.19   1.3e+02     218     288 ..     390     460 ..     376     465 .. 0.90
   2 ?    5.6   0.2    0.0095       6.6     215     291 ..     478     554 ..     474     570 .. 0.74
   3 ?    4.1   1.2     0.027        19     247     347 ..     636     736 ..     606     799 .. 0.74

  Alignments for each domain:
  == domain 1  score: 1.3 bits;  conditional E-value: 0.19
                 HHHHHHHHHH-SSS-HHHHHHHHHHHHHHSS--HHHHHHHHHHHHH-TT-HHHHHHHHHHHHHTT-HHHHH CS
       ChAPs 218 davkllneeleeeekdaelLllqaefllskkkeelAlevakravksaPsefktWalLvkvYikledienAL 288
                 +avk l  +l+ +ek+  l + +    +  +++  Ale a++ v++ P+  k + +   v+ +++++e+A 
  KOO23659.1 390 RAVKHLTIALSLDEKSHVLYSNRCTAYIALEQYGKALEDADECVRLQPNWAKGYLRRGSVFFRMGQLEKAE 460
                 5888888899999999999999999999999999**********************************995 PP

  == domain 2  score: 5.6 bits;  conditional E-value: 0.0095
                 -HHHHH.HHHHHHH-SSS-HHHHHHHHHHHHHHSS--HHHHHHHHHHHHH-TT-HHHHHHHHHHHHHTT-HHHHHHHH CS
       ChAPs 215 eEvdav.kllneeleeeekdaelLllqaefllskkkeelAlevakravksaPsefktWalLvkvYikledienALltL 291
                 +E++av + + e ++ ++++ e     a    ++++++ A+e+ k+++k+ P +   +   +  Y++le++e+AL   
  KOO23659.1 478 KELEAVmNAIAERMARQRESLECKEK-AIEAFNEQNYKGAVELLKKSIKLDPDNHIFYSNRAAAYMALEQYEKALADA 554
                 56666522344444444444333222.222456778899***********************************9765 PP

  == domain 3  score: 4.1 bits;  conditional E-value: 0.027
                 SS--HHHHHHHHHHHHH-TT-HHHHHHHHHHHHHTT-HHHHHHHHHT----.SS--------SS-------EB---TTSS--TT--------.SS---S CS
       ChAPs 247 kkkeelAlevakravksaPsefktWalLvkvYikledienALltLNscPmf.tykekdvlrriapakseddlhlPlpldvvldevselnsse.vteeqk 343
                  ++ + A +  ++a+++ P +   +   +  Y+++e ++ AL   N c    +   k + r++a     + + lP   ++ ++ ++ + +++ v+ee +
  KOO23659.1 636 VQNFKRAEQHLSSAIELDPENHVFYSNRAAAYMAMEKFDLALKDANECVRLqPTWAKGYSRQAAAFL--SMADLPAAREACMKGLDLEPDNTqVKEELR 732
                 55556778888899*********************************97652555666666666666..678999999999999987765541666666 PP

                 ---H CS
       ChAPs 344 evdp 347
                 +v++
  KOO23659.1 733 RVEI 736
                 6654 PP

>> Vta1_C  Vta1 C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.2   0.0      0.21   1.4e+02      24      36 ..     389     401 ..     388     401 .. 0.89
   2 ?    0.0   0.0         1   7.1e+02      24      36 ..     514     526 ..     512     526 .. 0.90
   3 ?   -0.9   0.0       1.9   1.3e+03      22      36 ..     706     720 ..     692     720 .. 0.89
   4 ?    4.2   0.3      0.05        35      21      36 ..     753     768 ..     750     768 .. 0.94

  Alignments for each domain:
  == domain 1  score: 2.2 bits;  conditional E-value: 0.21
      Vta1_C  24 etAiknLqeALkl 36 
                 + A+k+L+ AL+l
  KOO23659.1 389 DRAVKHLTIALSL 401
                 78*********97 PP

  == domain 2  score: 0.0 bits;  conditional E-value: 1
      Vta1_C  24 etAiknLqeALkl 36 
                 ++A++ L++++kl
  KOO23659.1 514 KGAVELLKKSIKL 526
                 79********997 PP

  == domain 3  score: -0.9 bits;  conditional E-value: 1.9
      Vta1_C  22 DvetAiknLqeALkl 36 
                 D + A++ + ++L+l
  KOO23659.1 706 DLPAAREACMKGLDL 720
                 999*********987 PP

  == domain 4  score: 4.2 bits;  conditional E-value: 0.05
      Vta1_C  21 eDvetAiknLqeALkl 36 
                 +D+e A++ L++A++l
  KOO23659.1 753 QDYEKAVEDLTAAIAL 768
                 6************987 PP

>> TPR_10  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.8   0.2      0.34   2.4e+02      11      31 ..     415     435 ..     409     436 .. 0.90
   2 ?   -0.7   0.0         2   1.4e+03      11      30 ..     449     468 ..     445     469 .. 0.83
   3 ?   -2.7   0.0       9.3   6.4e+03      23      35 ..     492     504 ..     487     509 .. 0.76
   4 ?    0.2   0.0       1.1   7.8e+02      16      30 ..     511     525 ..     504     526 .. 0.85
   5 ?    9.7   0.9    0.0011      0.76       5      31 ..     534     560 ..     533     561 .. 0.94
   6 ?   -2.1   0.0         6   4.1e+03       6      30 ..     569     593 ..     564     594 .. 0.81
   7 ?    6.1   0.2     0.015        10       5      31 ..     660     686 ..     659     687 .. 0.93
   8 ?   -1.5   0.1       3.8   2.6e+03      16      30 ..     753     767 ..     749     768 .. 0.76
   9 ?    6.3   0.1     0.013         9       5      31 ..     776     802 ..     775     803 .. 0.92

  Alignments for each domain:
  == domain 1  score: 1.8 bits;  conditional E-value: 0.34
      TPR_10  11 alrqrgrydeAealleealai 31 
                 a+ ++ +y +A+++++e++++
  KOO23659.1 415 AYIALEQYGKALEDADECVRL 435
                 789999************986 PP

  == domain 2  score: -0.7 bits;  conditional E-value: 2
      TPR_10  11 alrqrgrydeAealleeala 30 
                 + +++g++++Ae  l+e l+
  KOO23659.1 449 VFFRMGQLEKAEHVLKEGLE 468
                 56799*******99998776 PP

  == domain 3  score: -2.7 bits;  conditional E-value: 9.3
      TPR_10  23 alleealairrrl 35 
                 a ++e+l++ +++
  KOO23659.1 492 ARQRESLECKEKA 504
                 5578999999987 PP

  == domain 4  score: 0.2 bits;  conditional E-value: 1.1
      TPR_10  16 grydeAealleeala 30 
                 ++y++A++ll++++ 
  KOO23659.1 511 QNYKGAVELLKKSIK 525
                 79**********986 PP

  == domain 5  score: 9.7 bits;  conditional E-value: 0.0011
      TPR_10   5 lnNLanalrqrgrydeAealleealai 31 
                 ++N a+a+ ++ +y++A+a++++++++
  KOO23659.1 534 YSNRAAAYMALEQYEKALADADDCIRL 560
                 79**********************986 PP

  == domain 6  score: -2.1 bits;  conditional E-value: 6
      TPR_10   6 nNLanalrqrgrydeAealleeala 30 
                 +  ++al+++ ++  A++ +e+ l+
  KOO23659.1 569 SRRGAALFRLDKLGPARDAFEKGLE 593
                 5568999999999999999999776 PP

  == domain 7  score: 6.1 bits;  conditional E-value: 0.015
      TPR_10   5 lnNLanalrqrgrydeAealleealai 31 
                 ++N a+a+ ++ ++d A++++ e++++
  KOO23659.1 660 YSNRAAAYMAMEKFDLALKDANECVRL 686
                 79**********************986 PP

  == domain 8  score: -1.5 bits;  conditional E-value: 3.8
      TPR_10  16 grydeAealleeala 30 
                 ++y++A+++l  a+a
  KOO23659.1 753 QDYEKAVEDLTAAIA 767
                 678888888888876 PP

  == domain 9  score: 6.3 bits;  conditional E-value: 0.013
      TPR_10   5 lnNLanalrqrgrydeAealleealai 31 
                 ++N ++a+++++ y++A+++++e++++
  KOO23659.1 776 YSNRSVAYTAMQMYEKALEDADECIRL 802
                 78999*******************986 PP

>> ANAPC3  Anaphase-promoting complex, cyclosome, subunit 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.1   0.5     0.081        56       4      80 ..     387     464 ..     384     466 .. 0.69
   2 ?    2.4   0.0      0.26   1.8e+02      31      55 ..     448     473 ..     443     477 .. 0.82
   3 ?    7.5   0.4    0.0068       4.7      34      77 ..     508     552 ..     487     590 .. 0.77
   4 ?    0.2   0.1       1.3   9.2e+02      39      73 ..     639     674 ..     631     689 .. 0.46
   5 ?    0.8   0.3      0.88     6e+02      33      70 ..     749     794 ..     737     802 .. 0.63

  Alignments for each domain:
  == domain 1  score: 4.1 bits;  conditional E-value: 0.081
                 -HHHHHHHHHHHH.HHH--HHHHHHH...HHHHHHTT-HHHHHHHHHCT.SHHHC-HHHHHHHHHHHHHTT-HHHHHHHH- CS
      ANAPC3   4 nyknAiflaerllaaetespedayll...AlclylngqykrAyellrka.klnskslgcrylfAqcllkLkkyeeAiaaLe 80 
                 +y+ A+ ++  +l   + ++++  l+   + ++  ++qy +A+e ++++ +l+++  +  +  + + + ++++e+A+ +L+
  KOO23659.1 387 AYDRAVKHLTIAL---SLDEKSHVLYsnrCTAYIALEQYGKALEDADECvRLQPNWAKGYLRRGSVFFRMGQLEKAEHVLK 464
                 6777777777777...55555555555679999999999999999999977766655554444555567777777777776 PP

  == domain 2  score: 2.4 bits;  conditional E-value: 0.26
                 HHHHHTT-HHHHHHHHHCT.SHHHC- CS
      ANAPC3  31 lclylngqykrAyellrka.klnsks 55 
                  +++++gq ++A ++l++  +l++++
  KOO23659.1 448 SVFFRMGQLEKAEHVLKEGlELDPSN 473
                 689**************987776665 PP

  == domain 3  score: 7.5 bits;  conditional E-value: 0.0068
                 HHTT-HHHHHHHHHCT.SHHHC-HHHHHHHHHHHHHTT-HHHHHH CS
      ANAPC3  34 ylngqykrAyellrka.klnskslgcrylfAqcllkLkkyeeAia 77 
                 ++ ++yk A ell+k+ kl++ ++      A ++ +L++ye+A+a
  KOO23659.1 508 FNEQNYKGAVELLKKSiKLDPDNHIFYSNRAAAYMALEQYEKALA 552
                 666777777777777777777777666667777777777777764 PP

  == domain 4  score: 0.2 bits;  conditional E-value: 1.3
                 HHHHHHHHHCT.SHHHC-HHHHHHHHHHHHHTT-HH CS
      ANAPC3  39 ykrAyellrka.klnskslgcrylfAqcllkLkkye 73 
                 +krA + l++a +l+++++      A ++ +++k++
  KOO23659.1 639 FKRAEQHLSSAiELDPENHVFYSNRAAAYMAMEKFD 674
                 555555555554444444433333333333333322 PP

  == domain 5  score: 0.8 bits;  conditional E-value: 0.88
                 HHHTT-HHHHHHHHHCT.SHHHC-H......HHHHHHHHHHH.HTT CS
      ANAPC3  33 lylngqykrAyellrka.klnsksl......gcrylfAqcll.kLk 70 
                  +++++y++A e l  a  l+++++       ++y++ q +  +L+
  KOO23659.1 749 AFKAQDYEKAVEDLTAAiALDPSNQvfysnrSVAYTAMQMYEkALE 794
                 5888999999999988877777666444444444444454443334 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (865 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       694  (0.0387082); expected 358.6 (0.02)
Passed bias filter:                      446  (0.0248759); expected 358.6 (0.02)
Passed Vit filter:                        62  (0.00345808); expected 17.9 (0.001)
Passed Fwd filter:                        30  (0.00167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              26  [number of targets reported over threshold]
# CPU time: 0.84u 0.31s 00:00:01.14 Elapsed: 00:00:00.54
# Mc/sec: 4808.93
//
Query:       KOO23660.1  [L=106]
Description: hypothetical protein Ctob_010916 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (106 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       194  (0.0108205); expected 358.6 (0.02)
Passed bias filter:                      145  (0.00808746); expected 358.6 (0.02)
Passed Vit filter:                         8  (0.000446204); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.25s 00:00:00.60 Elapsed: 00:00:00.40
# Mc/sec: 785.45
//
Query:       KOO23661.1  [L=399]
Description: vesicle transport protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.3e-30  106.1  12.6    2.1e-30  105.4  12.6    1.3  1  Got1      Got1/Sft2-like family
  ------ inclusion threshold ------
        4.5    8.0  19.9       0.25   12.0   3.9    3.4  3  LEA_1     Late embryogenesis abundant (LEA) group 1
        7.5    7.2   8.9         12    6.6   4.0    2.9  2  DUF883    Bacterial protein of unknown function (DUF883)


Domain annotation for each model (and alignments):
>> Got1  Got1/Sft2-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  105.4  12.6   3.5e-34   2.1e-30       3     110 ..     264     372 ..     254     375 .. 0.90

  Alignments for each domain:
  == domain 1  score: 105.4 bits;  conditional E-value: 3.5e-34
        Got1   3 llfllsllglpllfl.kprkFallytlGnilflastafLiGpkkqlkkmfskerliativyllsllltLyaalvlkstlltllfvivqllallwyllsy 100
                 ll l sl+++  l++ +p  Fa+ ytlGn+l+l++t+fL+Gp++qlk+m++++r+ a+i+y+++l+ tL++ +vl+s ll l+f+++q++al+wy+lsy
  KOO23661.1 264 LLSLGSLMSIAKLLMgNPIPFAFKYTLGNLLSLGATSFLVGPTRQLKQMMEPSRRLASIAYFGTLIGTLVCIFVLHSGLLSLVFILLQFFALTWYILSY 362
                 3333347777666668*********************************************************************************** PP

        Got1 101 iPggrsalkk 110
                 iP+g++a+  
  KOO23661.1 363 IPYGQTAAIA 372
                 *****98765 PP

>> LEA_1  Late embryogenesis abundant (LEA) group 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.6   4.8     0.037   2.2e+02       1      38 [.       1      39 [.       1      64 [. 0.75
   2 ?   -3.7   0.0         3   1.8e+04      22      32 ..     145     155 ..     141     158 .. 0.65
   3 ?   12.0   3.9   4.3e-05      0.25       2      36 ..     179     213 ..     178     218 .. 0.93

  Alignments for each domain:
  == domain 1  score: 2.6 bits;  conditional E-value: 0.037
       LEA_1  1 MqsaKekakdvaasakakmektkAkaeEK.aekatArdp 38
                M s+K k++   asa++ me+++ k   K +e   A++ 
  KOO23661.1  1 MDSFKGKLSAGLASARSTMEEARTKGMTKlVEEKVASSG 39
                99******************9998865554555555555 PP

  == domain 2  score: -3.7 bits;  conditional E-value: 3
       LEA_1  22 tkAkaeEKaek 32 
                 ++Ak+ +  ek
  KOO23661.1 145 AQAKVSGSLEK 155
                 46777666666 PP

  == domain 3  score: 12.0 bits;  conditional E-value: 4.3e-05
       LEA_1   2 qsaKekakdvaasakakmektkAkaeEKaekatAr 36 
                 q+a +ka d+++s  +k++ t A+a+E+ + a A+
  KOO23661.1 179 QAAGQKARDLGSSGVEKLKTTAATAKERCGEAAAA 213
                 7899*************************999997 PP

>> DUF883  Bacterial protein of unknown function (DUF883)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.6   0.2     0.071   4.2e+02      23      60 ..      13      50 ..       1      69 [. 0.62
   2 ?    6.6   4.0     0.002        12      16      68 ..     151     206 ..     134     221 .. 0.56

  Alignments for each domain:
  == domain 1  score: 1.6 bits;  conditional E-value: 0.071
      DUF883 23 deageeaeelRerleerlerarerlrdaeeavaerake 60
                ++a++++ee+R + + +l + + + + ++e va+  ++
  KOO23661.1 13 ASARSTMEEARTKGMTKLVEEKVASSGLSEGVAKFKEK 50
                34566666666666666666666666666655554444 PP

  == domain 2  score: 6.6 bits;  conditional E-value: 0.002
      DUF883  16 ellkeaadeageeaeelRerleerlerare...rlrdaeeavaerakeaaeaaddy 68 
                   l++  d + e+a+++R+ +++ +e++++   ++rd+  + +e+ k  a++a++ 
  KOO23661.1 151 GSLEKVRDLGLEKAQKARDLASNGVEKVQAagqKARDLGSSGVEKLKTTAATAKER 206
                 34444555555555555555555444444311145555666666666666666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (399 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       828  (0.0461822); expected 358.6 (0.02)
Passed bias filter:                      472  (0.0263261); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.52u 0.27s 00:00:00.79 Elapsed: 00:00:00.43
# Mc/sec: 2768.94
//
Query:       KOO23662.1  [L=1848]
Description: nipped-b-like protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.2e-09   38.4   0.0    0.00083   19.3   0.0    3.3  3  Nipped-B_C    Sister chromatid cohesion C-terminus
    3.5e-08   33.6  12.0      2e-05   24.8   1.1    3.9  3  Cohesin_HEAT  HEAT repeat associated with sister chromatid co
      7e-08   32.2   9.8    1.9e-07   30.9   9.8    1.8  1  PHD           PHD-finger
    9.6e-05   21.9   4.9    0.00024   20.6   4.9    1.8  1  PHD_2         PHD-finger
    0.00018   21.2   0.1    0.00035   20.2   0.1    1.4  1  TUDOR_5       Histone methyltransferase Tudor domain 1
    0.00049   19.9   0.4     0.0012   18.6   0.1    1.8  2  Tudor_3       DNA repair protein Crb2 Tudor domain
  ------ inclusion threshold ------
      0.027   14.7   4.1         28    5.3   0.0    5.2  4  HEAT          HEAT repeat
      0.093   12.8   0.0       0.43   10.6   0.0    2.0  2  Cnd1          non-SMC mitotic condensation complex subunit 1
        0.2   11.8   1.6        0.7   10.1   0.0    2.8  3  RTP1_C1       Required for nuclear transport of RNA pol II C-


Domain annotation for each model (and alignments):
>> Nipped-B_C  Sister chromatid cohesion C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.4   0.0      0.47   9.4e+02      52      82 ..     891     921 ..     874     933 .. 0.83
   2 !   19.3   0.0   4.2e-07   0.00083       5      56 ..    1439    1491 ..    1436    1514 .. 0.90
   3 !   14.3   0.0   1.5e-05     0.029     118     190 .]    1523    1597 ..    1515    1597 .. 0.85

  Alignments for each domain:
  == domain 1  score: -0.4 bits;  conditional E-value: 0.47
                 HTT-SSHHHHHHHHHHHHHHHHHSHHHHHHT CS
  Nipped-B_C  52 letdpdesirsrAdkllqeleekyegflesk 82 
                 +  dp++s+r rA k l+e+ +  +++l+ k
  KOO23662.1 891 VHRDPQPSTRARALKALREVIKADPSVLSLK 921
                 4679***************999999998765 PP

  == domain 2  score: 19.3 bits;  conditional E-value: 4.2e-07
                  HHHHHHHHHHHHTS.S-HHHHHHHHHHHHHHHHHT-S-GGGTHHHHHHHTT-S CS
  Nipped-B_C    5 vqrYlkdilecals.pdsqvrlaAlevvslilrqGLvhPvqcvptLialetdp 56  
                  +q  lkdil ++ +  d +vr aAl +    l+ G++hP +++p + ale d+
  KOO23662.1 1439 LQSQLKDILAAMRDpRDVSVRAAALALAGALLTNGIAHPAEILPKVLALEVDE 1491
                  58889*****99884588********************************996 PP

  == domain 3  score: 14.3 bits;  conditional E-value: 1.5e-05
                  HHHHHHHHH--SHHHHHHHHHHHHHHH.H..HTSSTT--HHHHHHHHHHHHHHHHCS--EEHHHHHHHHHHH... CS
  Nipped-B_C  118 llsslysllrsnkqsrrkflsslvklfdf..esesdaesekshlsfllfladnLahfpYqtqdEvlyvihhidri 190 
                  +l  ly l   n+++r++ l+ l+ ++++  + +    +  ++l    +l++ La +pY++  +vl +i + +r+
  KOO23662.1 1523 KLTALYILHGPNRKHRQAHLRELLGMLNVqqHETLPMAQLADELRLSEWLCHALAEMPYDKEPDVLGLICQANRM 1597
                  56678888899****************7676333456778899999**********************9988875 PP

>> Cohesin_HEAT  HEAT repeat associated with sister chromatid cohesion
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.8   1.1   9.9e-09     2e-05       1      42 []     905     947 ..     905     947 .. 0.90
   2 !   10.0   0.3   0.00042      0.83      22      37 ..     964     979 ..     963     979 .. 0.94
   3 ?    4.4   0.3     0.024        48      14      39 ..    1438    1463 ..    1436    1466 .. 0.87

  Alignments for each domain:
  == domain 1  score: 24.8 bits;  conditional E-value: 9.9e-09
                   HHHHHHHHH-GGGGGSHHHHHHHHHHHHS.S-HHHHHHHHHHH CS
  Cohesin_HEAT   1 kalsslvekdpsiLsapevldtiarrltD.sspsVRdAaLell 42 
                   kal  ++ +dps+Ls + v +t++ rl+D ss+ VR+++L+ll
    KOO23662.1 905 KALREVIKADPSVLSLKGVAQTVQGRLRDdSSIAVRESVLDLL 947
                   78888999********************736678********8 PP

  == domain 2  score: 10.0 bits;  conditional E-value: 0.00042
                   HHHHHHHSS-HHHHHH CS
  Cohesin_HEAT  22 tiarrltDsspsVRdA 37 
                   tia+rl+D+ +sVR A
    KOO23662.1 964 TIASRLSDPGVSVRRA 979
                   8*************98 PP

  == domain 3  score: 4.4 bits;  conditional E-value: 0.024
                    GGSHHHHHHHHHHHHSS.-HHHHHHHH CS
  Cohesin_HEAT   14 LsapevldtiarrltDs.spsVRdAaL 39  
                      +++++d++a+ ++D+ ++sVR+AaL
    KOO23662.1 1438 SLQSQLKDILAA-MRDPrDVSVRAAAL 1463
                    568899999999.***989*******9 PP

>> PHD  PHD-finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.9   9.8   9.4e-11   1.9e-07       4      50 ..     718     763 ..     716     765 .. 0.82

  Alignments for each domain:
  == domain 1  score: 30.9 bits;  conditional E-value: 9.4e-11
                 TTTS..TTSTTSCEEEETTTSCEEETTTSSSTHSHHSHHSSTBSSTTTH CS
         PHD   4 vCkk..ksdeeeelvqCdgCkrwfHqkClkppleseekpegewlCekCk 50 
                  C+    ++++++++ Cd C++wfH +C+++ +++++   +ew+C++C+
  KOO23662.1 718 PCGVteYDKTQSFMLDCDLCHQWFHGECMGVGDSKTD---KEWYCDHCR 763
                 56655457789*********************88444...47******7 PP

>> PHD_2  PHD-finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.6   4.9   1.2e-07   0.00024       2      36 .]     729     763 ..     728     763 .. 0.95

  Alignments for each domain:
  == domain 1  score: 20.6 bits;  conditional E-value: 1.2e-07
       PHD_2   2 npllsCdkCsvaVHasCYGvskesdgeeWlCrrCe 36 
                 + +l Cd C   +H +C Gv ++++ +eW+C+ C+
  KOO23662.1 729 SFMLDCDLCHQWFHGECMGVGDSKTDKEWYCDHCR 763
                 56899*****************************6 PP

>> TUDOR_5  Histone methyltransferase Tudor domain 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.2   0.1   1.7e-07   0.00035       1      46 [.     135     175 ..     135     181 .. 0.86

  Alignments for each domain:
  == domain 1  score: 20.2 bits;  conditional E-value: 1.7e-07
     TUDOR_5   1 lpvGtRviAkykdekkkskyyaGiiAEppkktNryRYlifFDDGya 46 
                 l vG+Rv A++   k+++ +++G+i+ +  ++++    + +DDG+ 
  KOO23662.1 135 LAVGARVLARF---KRRDRFFPGVITAV--NRDNCTVSVCYDDGDE 175
                 78*********...567**********9..44447889******86 PP

>> Tudor_3  DNA repair protein Crb2 Tudor domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.6   0.1   6.2e-07    0.0012       3      50 ..     139     185 ..     137     186 .. 0.92
   2 ?   -3.1   0.0       3.7   7.4e+03      18      38 ..     594     612 ..     593     618 .. 0.81

  Alignments for each domain:
  == domain 1  score: 18.6 bits;  conditional E-value: 6.2e-07
                 GEEEEE-SSSS--EEEEEEEEEEE-SSSEEEEEETTS.-EEEEETTSEE CS
     Tudor_3   3 nrVfAlfkGkkraYYPAtclgvsssgsqrykVrFdDg.tpeevdskqvr 50 
                  rV+A fk +   ++P+ + +v++++  ++ V +dDg + e+v ++ v+
  KOO23662.1 139 ARVLARFK-RRDRFFPGVITAVNRDNC-TVSVCYDDGdEEEDVREQDVK 185
                 69******.9999************97.*********888999999998 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 3.7
                 EEEEEEEEE-SSSEEEEEETT CS
     Tudor_3  18 PAtclgvsssgsqrykVrFdD 38 
                  A+cl   ++     kV F++
  KOO23662.1 594 AAKCLDHADDA--ENKVAFEE 612
                 59999999999..78999987 PP

>> HEAT  HEAT repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.2   0.0         9   1.8e+04      17      28 ..     667     678 ..     662     679 .. 0.81
   2 ?    5.3   0.0     0.014        28       3      28 ..     885     911 ..     883     913 .. 0.83
   3 ?    4.7   0.0     0.023        45       5      26 ..     927     949 ..     924     952 .. 0.83
   4 ?    1.3   0.2      0.28   5.7e+02       5      27 ..    1446    1469 ..    1443    1472 .. 0.71

  Alignments for each domain:
  == domain 1  score: -4.2 bits;  conditional E-value: 9
                 HHHHHHHHHHHH CS
        HEAT  17 ReaAakaLgala 28 
                 R  A++ Lgal+
  KOO23662.1 667 RTLALEQLGALL 678
                 889999999986 PP

  == domain 2  score: 5.3 bits;  conditional E-value: 0.014
                 HHHHHHH.T-SSHHHHHHHHHHHHHHH CS
        HEAT   3 Plllkll.sDpspeVReaAakaLgala 28 
                   ll    +Dp p+ R+ A+kaL +++
  KOO23662.1 885 SYLLAYVhRDPQPSTRARALKALREVI 911
                 567777779**************9876 PP

  == domain 3  score: 4.7 bits;  conditional E-value: 0.023
                 HHHHH.T-SSHHHHHHHHHHHHH CS
        HEAT   5 llkll.sDpspeVReaAakaLga 26 
                 ++  l  D+s  VRe+++  Lg+
  KOO23662.1 927 VQGRLrDDSSIAVRESVLDLLGE 949
                 566786789999*********97 PP

  == domain 4  score: 1.3 bits;  conditional E-value: 0.28
                  HHHHHT-SSHH.HHHHHHHHHHHH CS
        HEAT    5 llkllsDpspe.VReaAakaLgal 27  
                  +l +++Dp    VR+aA+   gal
  KOO23662.1 1446 ILAAMRDPRDVsVRAAALALAGAL 1469
                  566779955554999999876666 PP

>> Cnd1  non-SMC mitotic condensation complex subunit 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0   0.00021      0.43      31     107 ..     893     978 ..     883    1039 .. 0.74
   2 ?   -2.1   0.0       1.8   3.5e+03      22      65 ..    1442    1486 ..    1432    1494 .. 0.73

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00021
        Cnd1  31 kDedpyVRktaaivvakLilnd..mvkekgflselakll.eDenprVvanalaalteiseksenaiynllpdiisklsd......a 107
                 +D++p  R  a+ ++ ++i++d  +   kg+ ++++  l +D++  V++++l +l e+++ ++++i +   +i+s+lsd      +
  KOO23662.1 893 RDPQPSTRARALKALREVIKADpsVLSLKGVAQTVQGRLrDDSSIAVRESVLDLLGEYLRLKPELITQYYATIASRLSDpgvsvrR 978
                 8*****************777754789999*********6677789*******************************985554440 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 1.8
        Cnd1   22 lvepLrkrLkDe.dpyVRktaaivvakLilndmvkekgflselak 65  
                   ++++ ++++D+ d  VR  a+ +   L++n++    ++l +++ 
  KOO23662.1 1442 QLKDILAAMRDPrDVSVRAAALALAGALLTNGIAHPAEILPKVLA 1486
                  566777888886367899999999999999988887777666655 PP

>> RTP1_C1  Required for nuclear transport of RNA pol II C-terminus 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.9   0.0       7.9   1.6e+04      12      31 ..     494     513 ..     493     529 .. 0.69
   2 ?   10.1   0.0   0.00035       0.7       9      54 ..     893     936 ..     888     948 .. 0.93
   3 ?   -2.2   0.1       2.4   4.7e+03       3      43 ..    1445    1486 ..    1443    1489 .. 0.79

  Alignments for each domain:
  == domain 1  score: -3.9 bits;  conditional E-value: 7.9
     RTP1_C1  12 llpvrahglvlLrkliekks 31 
                 +lp++  g++lL  l+ +  
  KOO23662.1 494 CLPIQMAGMRLLLALFAEYP 513
                 57889999999888887764 PP

  == domain 2  score: 10.1 bits;  conditional E-value: 0.00035
     RTP1_C1   9 qdpllpvrahglvlLrkliekkskeavldiekilkllleaLkdeds 54 
                 +dp++ +ra++l  Lr++i++    +vl+++ ++++++  L+d+ s
  KOO23662.1 893 RDPQPSTRARALKALREVIKADP--SVLSLKGVAQTVQGRLRDDSS 936
                 69********************9..99999*****99999999865 PP

  == domain 3  score: -2.2 bits;  conditional E-value: 2.4
     RTP1_C1    3 ealkdlqdp.llpvrahglvlLrkliekkskeavldiekilk 43  
                   +l+ ++dp  + vra +l l   l+++  +++++ ++k+l 
  KOO23662.1 1445 DILAAMRDPrDVSVRAAALALAGALLTNGIAHPAEILPKVLA 1486
                  6777888887899******99999999888887777777765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1848 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       784  (0.043728); expected 358.6 (0.02)
Passed bias filter:                      451  (0.0251548); expected 358.6 (0.02)
Passed Vit filter:                        56  (0.00312343); expected 17.9 (0.001)
Passed Fwd filter:                        15  (0.000836633); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 1.02u 0.32s 00:00:01.34 Elapsed: 00:00:00.46
# Mc/sec: 11970.93
//
Query:       KOO23663.1  [L=157]
Description: hypothetical protein Ctob_008559 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.2e-05   23.8   0.0      6e-05   23.2   0.0    1.3  1  p25-alpha  p25-alpha
     0.0041   16.9   0.0     0.0057   16.5   0.0    1.2  1  RVT_3      Reverse transcriptase-like
  ------ inclusion threshold ------
      0.017   15.6   1.5       0.06   13.8   1.4    1.9  2  EF-hand_7  EF-hand domain pair
      0.031   13.8   4.1        1.2    8.9   0.0    3.7  4  EF-hand_1  EF hand
          2    8.6   5.3          8    6.7   0.0    3.5  3  EF-hand_6  EF-hand domain


Domain annotation for each model (and alignments):
>> p25-alpha  p25-alpha
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.2   0.0   1.7e-08     6e-05       2      79 ..      32     122 ..      31     135 .. 0.79

  Alignments for each domain:
  == domain 1  score: 23.2 bits;  conditional E-value: 1.7e-08
   p25-alpha   2 eaFkaFakfg.....dtkktgkemdnknfsKlckDckiidkkvtstdvDiiFsKvk........aksarkitfeqfkealeelaekkfkkk 79 
                 ++F+a+a+ +        ++++ ++ ++++K++ Dc ++d ++t+ +   iF+ v+        +++++++++++f   l  + + k+++k
  KOO23663.1  32 KIFRAYAEGDqaaivADVQGNESINLAELKKMLSDCSMMDDNLTNVKLQSIFAEVNvgsaeegiDENDSEMSYDEFLSTLALICDVKIPEK 122
                 57888888763333322347899*******************************9977777776777888888888888888888777765 PP

>> RVT_3  Reverse transcriptase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.0   1.6e-06    0.0057      64     114 ..      37      87 ..       7      90 .. 0.90

  Alignments for each domain:
  == domain 1  score: 16.5 bits;  conditional E-value: 1.6e-06
       RVT_3  64 vvegDsktvvqllngrekvksselanlldeirkllksfesvsvehipReqN 114
                   egD++ +v  ++g+e+++  el+++l+++  + +++++v+++ i  e N
  KOO23663.1  37 YAEGDQAAIVADVQGNESINLAELKKMLSDCSMMDDNLTNVKLQSIFAEVN 87 
                 579****************************************99988887 PP

>> EF-hand_7  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.0      0.66   2.4e+03      44      56 ..      17      29 ..       7      37 .. 0.69
   2 ?   13.8   1.4   1.7e-05      0.06      11      67 ..      47     108 ..      27     111 .. 0.89

  Alignments for each domain:
  == domain 1  score: -0.9 bits;  conditional E-value: 0.66
   EF-hand_7 44 eelellfkefDtd 56
                  +++lf  fD+d
  KOO23663.1 17 ANVRALFVFFDKD 29
                5577777777776 PP

  == domain 2  score: 13.8 bits;  conditional E-value: 1.7e-05
   EF-hand_7  11 lDtdgdgyldkeellrllrkifqgagegsklsdeelellfkef.........DtdkdGvisfdEFl 67 
                  D+ g+ +++ +el+++l   +     +++l+  +l+ +f e+         D ++  ++s+dEFl
  KOO23663.1  47 ADVQGNESINLAELKKMLSDCS---MMDDNLTNVKLQSIFAEVnvgsaeegiDEND-SEMSYDEFL 108
                 79*****************988...99****************9999999766665.5*******8 PP

>> EF-hand_1  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.7   0.4      0.14     5e+02       2      12 ..      19      29 ..      18      30 .. 0.88
   2 ?   -1.1   0.0       0.5   1.8e+03       1       9 [.      29      37 ..      29      37 .. 0.80
   3 ?    8.9   0.0   0.00032       1.2       9      27 ..      47      65 ..      41      67 .. 0.90
   4 ?    3.1   0.0     0.024        85      13      26 ..      98     111 ..      96     114 .. 0.83

  Alignments for each domain:
  == domain 1  score: 0.7 bits;  conditional E-value: 0.14
                HHHHHHHHTTT CS
   EF-hand_1  2 lkeiFrefDkD 12
                ++ +F  fDkD
  KOO23663.1 19 VRALFVFFDKD 29
                67899*****9 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 0.5
                HHHHHHHHH CS
   EF-hand_1  1 elkeiFref 9 
                +l++iFr +
  KOO23663.1 29 DLRKIFRAY 37
                589999976 PP

  == domain 3  score: 8.9 bits;  conditional E-value: 0.00032
                HTTTSSSEEEHHHHHHHHH CS
   EF-hand_1  9 fDkDgdGkIdfeEfkellk 27
                +D+ g+  I++ E+k++l+
  KOO23663.1 47 ADVQGNESINLAELKKMLS 65
                89***************97 PP

  == domain 4  score: 3.1 bits;  conditional E-value: 0.024
                 SSSEEEHHHHHHHH CS
   EF-hand_1  13 gdGkIdfeEfkell 26 
                 +d  ++++Ef++ l
  KOO23663.1  98 NDSEMSYDEFLSTL 111
                 78899*****9876 PP

>> EF-hand_6  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.5   0.8      0.22   7.9e+02       1       6 [.      29      34 ..      18      42 .. 0.59
   2 ?    6.7   0.0    0.0022         8      10      28 ..      48      66 ..      46      75 .. 0.88
   3 ?    0.7   0.0      0.19   6.8e+02      13      26 ..      98     111 ..      95     114 .. 0.80

  Alignments for each domain:
  == domain 1  score: 0.5 bits;  conditional E-value: 0.22
   EF-hand_6  1 elreaF 6 
                +lr++F
  KOO23663.1 29 DLRKIF 34
                244455 PP

  == domain 2  score: 6.7 bits;  conditional E-value: 0.0022
   EF-hand_6 10 DkdgdGkidaeElrkalrk 28
                D+ g+ +i+ +El+k+l++
  KOO23663.1 48 DVQGNESINLAELKKMLSD 66
                8899*************95 PP

  == domain 3  score: 0.7 bits;  conditional E-value: 0.19
   EF-hand_6  13 gdGkidaeElrkal 26 
                 +d + +++E+ + l
  KOO23663.1  98 NDSEMSYDEFLSTL 111
                 68899*****9876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (157 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       595  (0.0331865); expected 358.6 (0.02)
Passed bias filter:                      472  (0.0263261); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.44u 0.24s 00:00:00.68 Elapsed: 00:00:00.42
# Mc/sec: 1135.30
//
Query:       KOO23664.1  [L=520]
Description: hypothetical protein Ctob_008557 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.9e-06   27.1   1.5      0.015   15.0   0.0    2.7  2  IQ        IQ calmodulin-binding motif
    3.1e-05   24.4   0.0      8e-05   23.1   0.0    1.7  1  PH        PH domain


Domain annotation for each model (and alignments):
>> IQ  IQ calmodulin-binding motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.4   0.4     5e-05      0.45       2      18 ..     286     302 ..     285     304 .. 0.90
   2 !   15.0   0.0   1.7e-06     0.015       3      19 ..     323     339 ..     322     341 .. 0.92

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 5e-05
                 HHHHHHHHHHHHHHHHH CS
          IQ   2 kaaikIQaawRGylaRk 18 
                 kaa+++Qa+ RG ++R 
  KOO23664.1 286 KAAVLLQARARGAKTRA 302
                 8***********99996 PP

  == domain 2  score: 15.0 bits;  conditional E-value: 1.7e-06
                 HHHHHHHHHHHHHHHHH CS
          IQ   3 aaikIQaawRGylaRkr 19 
                 aaik+Q+ +RG+ +R +
  KOO23664.1 323 AAIKLQKNFRGHSVRTE 339
                 9************9975 PP

>> PH  PH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.1   0.0   8.9e-09     8e-05       3      98 ..      12     108 ..      10     114 .. 0.84

  Alignments for each domain:
  == domain 1  score: 23.1 bits;  conditional E-value: 8.9e-09
                 EEEEEEEETSSSSC..SEEEEEEEEETTEEEEESSTTCTTESSEEEEEESTTEEEEEEECTTSSSSTSEEEEEESTSSS..TEEEEEEES.SHHHHHHH CS
          PH   3 keGwLlkkgsgkkk..swkkrwfvLkdsellyykndksekdkepkgsislsncevvevvatedpkrkfcfelriverng..srtyllqas.seeerkeW 96 
                 ++G+Llk + g k+  +  +r+f+  +  ++yy+ +   k+++ kg ++l+n+ + ++ a +++     + l +   ng   ++ +++++  eeer++W
  KOO23664.1  12 MQGYLLKNHDGGKFavKNNQRYFTSEGFTVFYYETE---KKSKAKGHFDLRNVLSIRPSA-DKGAPAGAIDLEVGAPNGgvAKRMVIAFPaGEEERSQW 106
                 89******999999898888******999*******...******************974.455555555555555566567********9******** PP

                 HH CS
          PH  97 ik 98 
                 +k
  KOO23664.1 107 LK 108
                 97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (520 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       757  (0.0422221); expected 358.6 (0.02)
Passed bias filter:                      495  (0.0276089); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.53u 0.27s 00:00:00.80 Elapsed: 00:00:00.43
# Mc/sec: 3634.56
//
Query:       KOO23665.1  [L=541]
Description: amino acid permease-like protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    9.8e-29  100.4  26.3    1.3e-28  100.0  26.3    1.1  1  AA_permease_2  Amino acid permease
    4.1e-08   32.3  28.2    1.6e-07   30.3  28.2    2.0  1  AA_permease    Amino acid permease
  ------ inclusion threshold ------
       0.22   11.3   0.0       0.22   11.3   0.0    2.8  3  LapA_dom       Lipopolysaccharide assembly protein A domain


Domain annotation for each model (and alignments):
>> AA_permease_2  Amino acid permease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  100.0  26.3   2.2e-32   1.3e-28       8     417 ..      53     485 ..      42     495 .. 0.81

  Alignments for each domain:
  == domain 1  score: 100.0 bits;  conditional E-value: 2.2e-32
  AA_permease_2   8 alvigsvigsgifvkn..laasggpalilwvw.iavligslavllvyaElssalprsgGiyvytkaafgkkvaflsawfnwfayvpvlasilsvaa 100
                    + v+g ++g      +  ++ s+gp++ l ++ +++l++s++++ + aEls+a+p +gG + +++aafg +++   ++++w + v+ +a++ +++ 
     KOO23665.1  53 FNVSGGPLG------SeqVISSVGPIIGLALLgVFALCFSVPQAMITAELSTAFPYNGGYSLWVQAAFGTFWGVQESYWSWCSGVVDTALYPVLLY 142
                    222233333......1445778888855555557799999*********************************99999999999999999999999 PP

  AA_permease_2 101 syllnalgp...dlqgn.....................................twltyliaiaililvalinirgikesakiqnilgilkillpl 156
                    s+ ++++++   d+  +                                       l y+i  +il++++l n+++ k ++ + + l ++ + +p 
     KOO23665.1 143 STAQHLFSGlgiDIGLEeeatcdsggggngtraadheeeptrnlwvcmfepgsgCALEYGIKLGILVFFCLPNLISSKAVGDFLTLLCVVAL-MP- 236
                    99988887655644333678899999999***********************985588***********************99999999999.89. PP

  AA_permease_2 157 iiliilglitvdgggfsslstetdtffpngwpgvllgllivlwsfdGfesaanvseevkk..kdvpkaifigllivlvlyllvniaflgvvpddei 250
                     +++++++ + + + ++       +  +  w + l++l+   w ++Gf+sa+ ++ ev+k   ++p+a+f+++++v++  + ++++++++  ++  
     KOO23665.1 237 -FAVLCAIGMPKMRVSNLV----RKPRQYDWGTCLSTLY---WNMSGFDSASTFAGEVEKpgSTIPRALFVAVAMVGLA-TAIPLLIAAAADPGWA 323
                    .888889999999999832....2233345666666666...***************9998679***********9865.5666666666666655 PP

  AA_permease_2 251 anlsnlgsvaalffeavggkvvaiivvilialsllgaintavigssrvlealardgvlPrffakvn.kfgspiraiiltaivslillllfllassa 345
                       ++++    + +  vgg+++ + + +  +ls +g   + ++  s++l  +a+ g  Pr+fa v+ ++g+pi+ai +++ +    +ll++l    
     KOO23665.1 324 CWQDGSL---VAAAMVVGGSWMGVWILATSTLSNWGLFASELLEDSYQLLGMAEMGLAPRVFAIVSpRTGTPINAILFQFSII---ALLISL---- 409
                    4446654...2334456789***********************************************************9885...344555.... PP

  AA_permease_2 346 aynfllsvsslgliisyllliigalilrkkrphlkrpgkilvaiigalfllfll....valffppkgpatqssliy 417
                    ++n ++ + ++++     l +++ + lr+krp+  rp+ki++++ g++++l++      ++++++++ ++q  + +
     KOO23665.1 410 DFNSIMCIDNFFSAAQGVLEFAAIVRLRIKRPEMARPYKIPLSTAGLVLFLIVPicwsLLICYVTVTDSVQAAVTI 485
                    8**************************************9999999888888864555666677777666655444 PP

>> AA_permease  Amino acid permease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.3  28.2   2.7e-11   1.6e-07      18     458 ..      61     501 ..      43     510 .. 0.78

  Alignments for each domain:
  == domain 1  score: 30.3 bits;  conditional E-value: 2.7e-11
  AA_permease  18 glgvvlsqaGplga.llayllagvviflvmlslgeiatngpksggfytyasrflgpelGfviGlnylfswitvlaleltaasiliqfwelvtdlpkaw 114
                  g+  v+s++Gp+ +  l  ++a  +++  +++++e++t++p +gg++ +++   g  +G+  ++  + s+++  al  + + ++ q +  ++ l   +
   KOO23665.1  61 GSEQVISSVGPIIGlALLGVFALCFSVPQAMITAELSTAFPYNGGYSLWVQAAFGTFWGVQESYWSWCSGVVDTALYPVLLYSTAQHL--FSGLGIDI 156
                  67778999998655355556666777778999********************************99***********99999999999..88888555 PP

  AA_permease 115 vt.............................................gavflvvlliinlvgvkvygeaefilalikiiaiiafiivgiillaggkpn 167
                  +                                               + +lv++++ nl++ k+ g + ++l++++++ ++ +  +g+  +      
   KOO23665.1 157 GLeeeatcdsggggngtraadheeeptrnlwvcmfepgsgcaleygiKLGILVFFCLPNLISSKAVGDFLTLLCVVALMPFAVLCAIGMPKMRVS--- 251
                  5599999***************************************9677999999************999999999999999999995222223... PP

  AA_permease 168 kgagfrflgdngsifknnlppgfakeeegafknfisvfvivvfaftGielvaiiagEvkdPeksiPkailqvviritifYvlsllligllvprndlgl 265
                                   nl+ +       + +++  ++++++  ++G+ +  + agEv+ P  +iP+a   +v +++++  + ll++ +  p  +   
   KOO23665.1 252 -----------------NLVRK------PRQYDWGTCLSTLYWNMSGFDSASTFAGEVEKPGSTIPRALFVAVAMVGLATAIPLLIAAAADPGWAC-- 324
                  .................44444......23789**************************************9999987765555555554444332.. PP

  AA_permease 266 lndsasaaspfvifikesgvsvlaplinaviltaalssansslysasRvlyslakdglaPkvlkkvs.krgvPlraillsmiisllalllaslnlaap 362
                   +   +  + +v + +  g s +++ i a++ ++ ++   s l   s +l  +a+ glaP+v++ vs + g P++ail+ + i +l++    +n++  
   KOO23665.1 325 WQ---D--GSLVAAAMVVGGSWMGVWILATSTLSNWGLFASELLEDSYQLLGMAEMGLAPRVFAIVSpRTGTPINAILFQFSIIALLI-SLDFNSI-M 415
                  22...2..35666777889999**************************************7776654399*********999988888.8899999.8 PP

  AA_permease 363 ivfnfllaisaliglivwlliilsylrfRkalkyqgrsieelgfkaallplgvilvlaaliiillilalyayltvkkgpkdwgaasfaaaylivll 458
                   + nf++a+ ++  ++  +   ++ +    +  ++  +i ++ + + l+   +i + ++++ ++++ ++ a +t      ++g ++ +++y+ +l+
   KOO23665.1 416 CIDNFFSAAQGVLEFAAIVRLRIKRP----E-MARPYKIPLSTAGLVLFLIVPICWSLLICYVTVTDSVQAAVT-----ICIGLVVGVLLYVPFLW 501
                  89999999999999975444444333....2.333333433444444444444444444444444444444444.....45555555555555554 PP

>> LapA_dom  Lipopolysaccharide assembly protein A domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -5.1   1.5         3   1.8e+04      30      37 ..      74      82 ..      72      87 .. 0.38
   2 ?   -1.6   0.1      0.41   2.5e+03      16      29 ..     448     461 ..     445     462 .. 0.89
   3 ?   11.3   0.0   3.8e-05      0.22      24      52 ..     482     512 ..     467     516 .. 0.89

  Alignments for each domain:
  == domain 1  score: -5.1 bits;  conditional E-value: 3
    LapA_dom 30 Ga.llgwll 37
                G+ llg+++
  KOO23665.1 74 GLaLLGVFA 82
                332222222 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 0.41
    LapA_dom  16 elpLsllllvafgi 29 
                 ++pLs+  lv f+i
  KOO23665.1 448 KIPLSTAGLVLFLI 461
                 79*****9999987 PP

  == domain 3  score: 11.3 bits;  conditional E-value: 3.8e-05
    LapA_dom  24 lvafgiGallgwllslwsyl..rlrrelrrl 52 
                 +v++ iG+++g+ll +++ +  r ++e+r++
  KOO23665.1 482 AVTICIGLVVGVLLYVPFLWwdRAKLEIRAK 512
                 7899************999999******997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (541 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       552  (0.0307881); expected 358.6 (0.02)
Passed bias filter:                      265  (0.0147805); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.54u 0.27s 00:00:00.81 Elapsed: 00:00:00.42
# Mc/sec: 3880.78
//
Query:       KOO23666.1  [L=130]
Description: ubiquitin-fold modifier 1 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.6e-07   29.8   0.0    9.1e-07   28.9   0.0    1.6  1  Ufm1      Ubiquitin fold modifier 1 protein


Domain annotation for each model (and alignments):
>> Ufm1  Ubiquitin fold modifier 1 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.9   0.0     5e-11   9.1e-07      16      72 ..      60     113 ..      39     115 .. 0.81

  Alignments for each domain:
  == domain 1  score: 28.9 bits;  conditional E-value: 5e-11
        Ufm1  16 ykvlsvpeeapftavlkfaaeeFkvpaatsaiitndGvginpqqtagnvflkygseL 72 
                    l vp  + f  vl +  ++F     + a + + G gi pqq+ag++f+kyg e+
  KOO23666.1  60 VCWLGVPHVTTFAVVLDLLNKKFSG---NGAFLLKGGYGIRPQQSAGQIFMKYGYEI 113
                 445789999**********999975...57999*********************997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (130 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       426  (0.0237604); expected 358.6 (0.02)
Passed bias filter:                      397  (0.0221429); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.24s 00:00:00.62 Elapsed: 00:00:00.40
# Mc/sec: 985.08
//
Query:       KOO23667.1  [L=808]
Description: mical-like protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    0.00019   20.8   0.1    0.00036   19.9   0.1    1.3  1  AlaDh_PNT_C    Alanine dehydrogenase/PNT, C-terminal domain
    0.00045   19.6   0.0      0.004   16.4   0.0    2.2  2  Pyr_redox_2    Pyridine nucleotide-disulphide oxidoreductase
      0.003   16.8   0.0     0.0057   15.9   0.0    1.4  1  Pyr_redox_3    Pyridine nucleotide-disulphide oxidoreductase
     0.0039   16.5   6.6      0.018   14.3   0.3    3.0  3  FAD_binding_3  FAD binding domain
  ------ inclusion threshold ------
      0.015   14.1   0.2      0.024   13.3   0.2    1.3  1  HI0933_like    HI0933-like protein
      0.024   15.2   0.4      0.055   14.0   0.4    1.6  1  Pyr_redox      Pyridine nucleotide-disulphide oxidoreductase
      0.031   14.5   0.0      0.087   13.1   0.0    1.8  1  NAD_binding_8  NAD(P)-binding Rossmann-like domain
      0.046   12.8   0.3      0.046   12.8   0.3    2.2  2  FAD_binding_2  FAD binding domain
       0.32   11.5   4.1       0.32   11.5   0.0    2.8  3  XdhC_C         XdhC Rossmann domain


Domain annotation for each model (and alignments):
>> AlaDh_PNT_C  Alanine dehydrogenase/PNT, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.9   0.1   1.8e-07   0.00036      27      61 ..     163     197 ..     160     203 .. 0.93

  Alignments for each domain:
  == domain 1  score: 19.9 bits;  conditional E-value: 1.8e-07
                  ---EEEEESTSHHHHHHHHHHHHTT-EEEEEESSH CS
  AlaDh_PNT_C  27 epakvlviGgGvaGlqAiatakglgakVtvlDvrp 61 
                  +pa+v++ G+G +Gl A+  a+ lg +Vtvl++r+
   KOO23667.1 163 DPARVVISGAGPVGLRAAVEASLLGMHVTVLEKRA 197
                  59******************************986 PP

>> Pyr_redox_2  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   0.0     2e-06     0.004     142     176 ..     160     198 ..     128     204 .. 0.81
   2 ?    0.1   0.0      0.19   3.8e+02      96     134 ..     315     349 ..     243     357 .. 0.72

  Alignments for each domain:
  == domain 1  score: 16.4 bits;  conditional E-value: 2e-06
                  T....SEEEEES-SHHHHHHHHHHHHHT-EEEEEESSSS CS
                  x....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2 142 p....krivvvGgGyiGvElAaalaklgkevtlveardr 176
                  p    +r+v+ G+G++G+  A +++ lg +vt++e r  
   KOO23667.1 160 PpddpARVVISGAGPVGLRAAVEASLLGMHVTVLEKRAV 198
                  144559*****************************9865 PP

  == domain 2  score: 0.1 bits;  conditional E-value: 0.19
                  EEEEESEEEE---EEE-BCTCTTC.TTBEECCSECHHHH CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2  96 ekiaydklvlAtGssprdlgipGvaenvgklvrtldsae 134
                    + +d+l+lA G ++++++  Gva    k+v+ +++a 
   KOO23667.1 315 DALPFDALLLAEGEWSNTCKQLGVA----KSVDRFTQAL 349
                  36899***********999877884....3445555555 PP

>> Pyr_redox_3  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.0   2.9e-06    0.0057       1      32 [.     168     198 ..     168     211 .. 0.88

  Alignments for each domain:
  == domain 1  score: 15.9 bits;  conditional E-value: 2.9e-06
  Pyr_redox_3   1 iIiGaGPaGlaaaielkkagledylilEkgni 32 
                  +I GaGP Gl aa+e+  +g+ ++++lEk ++
   KOO23667.1 168 VISGAGPVGLRAAVEASLLGM-HVTVLEKRAV 198
                  688******************.8******976 PP

>> FAD_binding_3  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.3   0.3   8.9e-06     0.018       3      36 ..     166     199 ..     164     203 .. 0.92
   2 ?   -0.5   0.2      0.28   5.7e+02      56     127 ..     482     578 ..     471     614 .. 0.66
   3 ?    4.1   0.1     0.012        23     246     320 ..     629     707 ..     591     720 .. 0.75

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 8.9e-06
                    EEEEE--SHHHHHHHHHHHHTTHHEEEEESSSSS CS
  FAD_binding_3   3 dVlIVGaGpaGlmlallLseaGvrvvlvekrstt 36 
                     V+I GaGp+Gl +a + s  G  v+++ekr+  
     KOO23667.1 166 RVVISGAGPVGLRAAVEASLLGMHVTVLEKRAVF 199
                    699***************************9876 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 0.28
                    TT-HHHHHHHSEECCCCEEEEEEE.......................CCCC.CEEEEEHH.CHHCST-CEE--HHHHHHHHHHHHHHHTEEETCSE CS
  FAD_binding_3  56 lGledrilaegapnelmgealyne.......................lsdt.pkaradle.lesspervtvypqteleriLvehaeerglqvrfkt 126
                    lG e +++a+ + ++ m++a +++                       ls++ p ++a l+ l  s ++v    q+++e+ Lv++ + rg +v+   
     KOO23667.1 482 LGEETKYHARSRAEADMEIAQRARerieleraitelrkvvgagvqqqLSKLePPRPAGLQmLSLSQMAVLFEQQQQFEQQLVAATKTRGPSVGLTC 577
                    555566666666666666666555555555555554444444433334444888888888555888888888899999999999988887776655 PP

                    E CS
  FAD_binding_3 127 e 127
                    e
     KOO23667.1 578 E 578
                    5 PP

  == domain 3  score: 4.1 bits;  conditional E-value: 0.012
                    HHHHHHHHHHHTTSSCEEEEEEEEEEEEEEEEESS...SEET.TEEE-GGGTEEE-STTSHHHHHHHHHHHHHHHHHHH CS
  FAD_binding_3 246 eevkarlreivgektldveieevsawtvaqrvaek...yrkg.rvflaGDAaHihpPtgGqGlNtaiqDavnLawkLaa 320
                    e++ ++l e + +++  ++  ++++++ ++r+a+    y++   vf +GDA       +G+G+N +   a + +w    
     KOO23667.1 629 ERALEELAEKTRIQQNAADAARARQAEWNERTARAhagYTSAvPVFPIGDALLEPFWPQGLGSNRGFHSALDAVWSVHV 707
                    56666666666666666666666666666666554223777779********999999****************98644 PP

>> HI0933_like  HI0933-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.2   1.2e-05     0.024       2      34 ..     166     198 ..     165     204 .. 0.90

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 1.2e-05
                  SEEEE--SHHHHHHHHHHHHTT--EEEE-SSSS CS
  HI0933_like   2 dviviGgGaAGlmaAisaakrgkrVlllekakk 34 
                  +v++ G+G+ Gl aA++a+  g +V++lek   
   KOO23667.1 166 RVVISGAGPVGLRAAVEASLLGMHVTVLEKRAV 198
                  69999************************9865 PP

>> Pyr_redox  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.4   2.8e-05     0.055       1      32 [.     166     197 ..     166     204 .. 0.92

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 2.8e-05
                 EEEEECSSHHHHHHHHHHHHTTSEEEEEESSS CS
   Pyr_redox   1 kvvvvGgGyiglElAgalaelgkkVtvversd 32 
                 +vv+ G+G +gl +A +++ lg +Vtv+e + 
  KOO23667.1 166 RVVISGAGPVGLRAAVEASLLGMHVTVLEKRA 197
                 79**************************9986 PP

>> NAD_binding_8  NAD(P)-binding Rossmann-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.0   4.4e-05     0.087       3      32 ..     171     200 ..     169     232 .. 0.79

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 4.4e-05
                    --SHHHHHHHHHHHCCTEEEEEE-SSSSSS CS
  NAD_binding_8   3 GaGlsGlvaAylLakagfdvlllekrdrlG 32 
                    GaG  Gl aA +++  g +v++lekr  ++
     KOO23667.1 171 GAGPVGLRAAVEASLLGMHVTVLEKRAVFS 200
                    9************************98765 PP

>> FAD_binding_2  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.3   2.3e-05     0.046       2      34 ..     167     199 ..     166     203 .. 0.93
   2 ?   -0.1   0.3      0.19   3.7e+02      60     123 ..     508     600 ..     493     674 .. 0.59

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 2.3e-05
                    EEEE--SHHHHHHHHHHHHTTT-EEEEESSSGG CS
  FAD_binding_2   2 viViGsGlAGLaAAleaaeaGlkvavvekeqef 34 
                    v++ G+G  GL+AA+ea+  G  v+v+ek  +f
     KOO23667.1 167 VVISGAGPVGLRAAVEASLLGMHVTVLEKRAVF 199
                    8999*************************8876 PP

  == domain 2  score: -0.1 bits;  conditional E-value: 0.19
                    CHHHHHHHHHHHHTTT-S-HHHHHHHHH.THHHHHHHHHHTT----B.............CCTS.SB-EEE-TT-SST...............E CS
  FAD_binding_2  60 dspelhrtdtlkaldeladqplveafve.aapeavdeLeelgvpfsr.............tedg.pvdvrelGglsat...............a 123
                      +e ++t+++k+++ + +q+l+++     a+  +  L ++ v f +             t+ g  v+++  G+ ++t                
     KOO23667.1 508 IELERAITELRKVVGAGVQQQLSKLEPPrPAGLQMLSLSQMAVLFEQqqqfeqqlvaatkTR-GpSVGLTCEGTAKKTyhlsavsahsgcteaV 600
                    45666777777777666666666664443666666666666666666555444555444244.2599999999999994444444444444440 PP

>> XdhC_C  XdhC Rossmann domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   0.4      0.86   1.7e+03       7      79 ..      25      99 ..      20     114 .. 0.68
   2 ?   11.5   0.0   0.00016      0.32       1      36 [.     167     202 ..     167     237 .. 0.88
   3 ?   -1.5   0.1       1.7   3.5e+03      44      97 ..     531     600 ..     486     626 .. 0.60

  Alignments for each domain:
  == domain 1  score: -0.6 bits;  conditional E-value: 0.86
                STTHHHHHHHHHHHTEEEEEEES-GGGG-GGG-TT-SE....-EEEE--S-HHHHHHHHHHHSSS--SEEEESS-HH CS
      XdhC_C  7 ghvaqalarlaaalgfrvtvvdpreefatkerfpeade....tavvvlthdhklDaealeaalrkkaayigllGSrk 79
                 + a+++ar+ +a +  v   ++r+e+a+++ +p+a        + +  +  + +++al++ +  ++++ + lG+ +
  KOO23667.1 25 AQHAAEVARITEAYDRAVKNDKARAEAAAASALPAAPPaprrGDATIRGRMSRAEQAALAEQM--RLSWAAFLGASE 99
                556778888888888888888888888888888866547777555556666666777777776..566666666555 PP

  == domain 2  score: 11.5 bits;  conditional E-value: 0.00016
                 EEEE--STTHHHHHHHHHHHTEEEEEEES-GGGG-G CS
      XdhC_C   1 lvifGaghvaqalarlaaalgfrvtvvdpreefatk 36 
                 +vi Gag+v+   a  a+ lg++vtv+++r+ f ++
  KOO23667.1 167 VVISGAGPVGLRAAVEASLLGMHVTVLEKRAVFSRV 202
                 689***************************988754 PP

  == domain 3  score: -1.5 bits;  conditional E-value: 1.7
                 E...............-EEEE--S-HHHHHHHHHHHSSS--SEEEES..S-HHHHHHHCTTS.--...... CS
      XdhC_C  44 e...............tavvvlthdhklDaealeaalrkkaayigll..GSrkkaarrlerlraaglseee 97 
                 +               +++v+  +++++++++++a   ++ + +gl   G +kk+ ++ +  +++g++e+ 
  KOO23667.1 531 KlepprpaglqmlslsQMAVLFEQQQQFEQQLVAATK-TRGPSVGLTceGTAKKTYHLSAVSAHSGCTEAV 600
                 0444555555566665666777777777777776665.333444443225556555555555555666555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (808 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       720  (0.0401584); expected 358.6 (0.02)
Passed bias filter:                      456  (0.0254337); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.67u 0.26s 00:00:00.93 Elapsed: 00:00:00.43
# Mc/sec: 5641.47
//
Query:       KOO23668.1  [L=256]
Description: hypothetical protein Ctob_003730 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
     0.0061   16.9   0.0       0.01   16.2   0.0    1.4  1  PDZ          PDZ domain
     0.0069   16.7   0.0      0.014   15.7   0.0    1.4  1  PDZ_2        PDZ domain
  ------ inclusion threshold ------
      0.031   14.2   0.0       0.13   12.3   0.0    1.9  2  Tricorn_PDZ  Tricorn protease PDZ domain
      0.079   12.8   0.1       0.24   11.3   0.1    1.9  2  PDZ_6        PDZ domain


Domain annotation for each model (and alignments):
>> PDZ  PDZ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.0   2.3e-06      0.01      37      81 ..      32      74 ..       4      75 .. 0.75

  Alignments for each domain:
  == domain 1  score: 16.2 bits;  conditional E-value: 2.3e-06
                SHHHHHTSSTTEEEEEETTEETTTSHHHHHHHHHHTTTSEEEEEE CS
         PDZ 37 gaaeadglkvGDkIlsvNgvdvenvsheeavqaikgskgkvtLti 81
                g a +++lkvGD+I +++g+ v++ +  +++ a  g+  +++L +
  KOO23668.1 32 GVATRSKLKVGDIIQRMDGKEVASAEAATVAFARAGT--SISLHV 74
                7889999****************99666665555555..555555 PP

>> PDZ_2  PDZ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.0   3.1e-06     0.014      27      72 ..      34      77 ..      30      90 .. 0.83

  Alignments for each domain:
  == domain 1  score: 15.7 bits;  conditional E-value: 3.1e-06
                GGGT.--TT-EEEEETTB--SSHHHHHHHHHTS-TT-EEEEEEEET CS
       PDZ_2 27 aakaglkagDvilkvdgkkvksledlislllkkkpGdtVkltvlRd 72
                a +++lk gD+i   dgk+v s e     ++++++G+ ++l v+R 
  KOO23668.1 34 ATRSKLKVGDIIQRMDGKEVASAEA--ATVAFARAGTSISLHVQRP 77
                77889***************77775..5678999**********94 PP

>> Tricorn_PDZ  Tricorn protease PDZ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.0      0.53   2.4e+03      30      43 ..       6      19 ..       4      20 .. 0.84
   2 ?   12.3   0.0   2.9e-05      0.13      40      82 ..      39      80 ..      31      84 .. 0.87

  Alignments for each domain:
  == domain 1  score: -1.4 bits;  conditional E-value: 0.53
                 B-GGGGGS---.TT CS
  Tricorn_PDZ 30 rSPLaepGvnvreG 43
                 r+P+++ Gv+v  G
   KOO23668.1  6 RAPFEKFGVRVGCG 19
                 89*******99766 PP

  == domain 2  score: 12.3 bits;  conditional E-value: 2.9e-05
                 -.TT-EEEEETTEE-BTTB-HHHHHHTTTTSEEEEEEE-STT- CS
  Tricorn_PDZ 40 vreGdlilavdgepvskekgiaelLvgkagkeveLtvkrkdgk 82
                 +++Gd+i   dg++v + ++ a +   +ag++++L+v+r +g+
   KOO23668.1 39 LKVGDIIQRMDGKEVAS-AEAATVAFARAGTSISLHVQRPEGG 80
                 689************97.67788888899*********98875 PP

>> PDZ_6  PDZ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.0      0.88   3.9e+03      10      19 ..       8      17 ..       5      17 .. 0.86
   2 ?   11.3   0.1   5.3e-05      0.24       9      56 .]      32      76 ..      15      76 .. 0.80

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 0.88
       PDZ_6 10 PAdrAGlrvG 19
                P ++ G+rvG
  KOO23668.1  8 PFEKFGVRVG 17
                8999****99 PP

  == domain 2  score: 11.3 bits;  conditional E-value: 5.3e-05
       PDZ_6  9 sPAdrAGlrvGDiilsvNGqpveglsladvaallrgsagesvvlvvrr 56
                ++A r  l+vGDii   +G++v   s + +  + + +ag+s++l v+r
  KOO23668.1 32 GVATRSKLKVGDIIQRMDGKEV--ASAEAATVAFA-RAGTSISLHVQR 76
                7899999***************..66665555554.669999999998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (256 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       461  (0.0257125); expected 358.6 (0.02)
Passed bias filter:                      415  (0.0231469); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.46u 0.26s 00:00:00.72 Elapsed: 00:00:00.43
# Mc/sec: 1778.16
//
Query:       KOO23669.1  [L=195]
Description: hypothetical protein Ctob_003725 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
        5.5    6.0   6.6        7.3    5.6   6.6    1.1  1  Roughex   Drosophila roughex protein


Domain annotation for each model (and alignments):
>> Roughex  Drosophila roughex protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.6   6.6   0.00041       7.3     223     274 ..      23      75 ..      14      80 .. 0.79

  Alignments for each domain:
  == domain 1  score: 5.6 bits;  conditional E-value: 0.00041
     Roughex 223 npqtddeeee.vpqarslsvrrilfadgadedgdedtdgsveekkddasepdl 274
                 +p + de++e +  a+    rr    ++a+  ++e +d sv e++dd  e + 
  KOO23669.1  23 DPMAIDEGDEdTAAAAAAEARRRAQQEAAERAAEEAADDSVTEEEDDKDEAES 75 
                 5666666654266777778899999999******************9998775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (195 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1403  (0.0782531); expected 358.6 (0.02)
Passed bias filter:                      818  (0.0456244); expected 358.6 (0.02)
Passed Vit filter:                       128  (0.00713927); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.26s 00:00:00.75 Elapsed: 00:00:00.41
# Mc/sec: 1438.60
//
Query:       KOO23670.1  [L=233]
Description: hypothetical protein Ctob_003726 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      4e-05   23.8   1.2    0.00021   21.5   0.4    2.3  3  TPR_12    Tetratricopeptide repeat
  ------ inclusion threshold ------
      0.083   13.0   2.5       0.13   12.4   0.3    2.5  3  TPR_2     Tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> TPR_12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.6   0.0       1.6   1.4e+04      17      24 ..      47      54 ..      42      57 .. 0.56
   2 !   21.5   0.4   2.3e-08   0.00021      14      74 ..      71     131 ..      69     134 .. 0.91
   3 ?    0.2   0.0      0.11   9.7e+02      26      59 ..     166     199 ..     160     207 .. 0.71

  Alignments for each domain:
  == domain 1  score: -3.6 bits;  conditional E-value: 1.6
      TPR_12 17 grydeAle 24
                g+ +eAle
  KOO23670.1 47 GKNEEALE 54
                44444443 PP

  == domain 2  score: 21.5 bits;  conditional E-value: 2.3e-08
      TPR_12  14 rrlgrydeAlellekaleiarrllGpdhpltattlrnLgrlyralgryeeAlelleealai 74 
                 ++l+++ +Al++ ++a ++   +   d +  a +++nL+++++ lg++e+A +++  a ++
  KOO23670.1  71 HALEEMIDALAYIDAASRVSGGVRVIDADTHACIMHNLATCCHHLGHFEAANAYYDLAQKM 131
                 5789999*************9999999999*************************877665 PP

  == domain 3  score: 0.2 bits;  conditional E-value: 0.11
      TPR_12  26 lekaleiarrllGpdhpltattlrnLgrlyralg 59 
                 l++ +  ar+++G+d +   +t + ++ +  +++
  KOO23670.1 166 LRRKMPDAREYFGGDGETRRWTPHEIAAAVVQAK 199
                 5555556899999999988888888877766665 PP

>> TPR_2  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.0      0.87   7.8e+03      15      22 ..      47      54 ..      42      56 .. 0.74
   2 ?   12.4   0.3   1.5e-05      0.13       3      29 ..     104     130 ..     102     132 .. 0.89
   3 ?   -2.1   0.0      0.67     6e+03      21      26 ..     163     168 ..     158     177 .. 0.54

  Alignments for each domain:
  == domain 1  score: -2.5 bits;  conditional E-value: 0.87
       TPR_2 15 gdyeeAle 22
                g+ eeAle
  KOO23670.1 47 GKNEEALE 54
                67788876 PP

  == domain 2  score: 12.4 bits;  conditional E-value: 1.5e-05
       TPR_2   3 alynlGlayyklgdyeeAleafekAle 29 
                 + +nl+ ++ +lg++e A ++++ A +
  KOO23670.1 104 IMHNLATCCHHLGHFEAANAYYDLAQK 130
                 579*******************98865 PP

  == domain 3  score: -2.1 bits;  conditional E-value: 0.67
       TPR_2  21 leafek 26 
                 +e++++
  KOO23670.1 163 KECLRR 168
                 444443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (233 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       376  (0.0209716); expected 358.6 (0.02)
Passed bias filter:                      309  (0.0172346); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.41u 0.27s 00:00:00.68 Elapsed: 00:00:00.42
# Mc/sec: 1664.70
//
Query:       KOO23671.1  [L=651]
Description: hypothetical protein Ctob_003727 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (651 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       444  (0.0247643); expected 358.6 (0.02)
Passed bias filter:                      366  (0.0204139); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.53u 0.28s 00:00:00.81 Elapsed: 00:00:00.41
# Mc/sec: 4720.41
//
Query:       KOO23672.1  [L=359]
Description: hypothetical protein Ctob_003724 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
        5.4    7.2   9.3        1.6    8.9   5.6    2.1  1  zf-GRF    GRF zinc finger


Domain annotation for each model (and alignments):
>> zf-GRF  GRF zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.9   5.6   8.7e-05       1.6       7      44 ..     199     238 ..     181     239 .. 0.77

  Alignments for each domain:
  == domain 1  score: 8.9 bits;  conditional E-value: 8.7e-05
      zf-GRF   7 rlavlltvrktgpNkGRkFYkCpkgke.......kqCgFFkWade 44 
                  l  l++++     k R F++Cp+ ++       + Cg+  W+de
  KOO23672.1 199 LLTCLKISK-----KNRPFWACPLVRKpgslpsgEACGWVCWCDE 238
                 334444444.....5699********9999999999********8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (359 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       596  (0.0332422); expected 358.6 (0.02)
Passed bias filter:                      333  (0.0185733); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.23s 00:00:00.67 Elapsed: 00:00:00.38
# Mc/sec: 2861.76
//
Query:       KOO23673.1  [L=1050]
Description: calcium-transporting ATPase endoplasmic reticulum-type-like protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      5e-50  169.7   1.5    1.1e-49  168.7   1.5    1.6  1  Cation_ATPase_C  Cation transporting ATPase, C-terminus
    1.4e-48  164.8   0.5    1.4e-48  164.8   0.5    3.6  4  E1-E2_ATPase     E1-E2 ATPase
    1.6e-18   66.2   3.8    2.5e-18   65.5   0.2    2.8  3  Cation_ATPase_N  Cation transporter/ATPase, N-terminus
    1.4e-17   63.5   0.0      3e-17   62.5   0.0    1.6  1  Cation_ATPase    Cation transport ATPase (P-type)
    4.1e-17   63.2   8.2    3.3e-16   60.2   5.3    3.0  2  Hydrolase        haloacid dehalogenase-like hydrolase
    0.00014   21.7   1.9     0.0003   20.6   1.1    1.9  2  Hydrolase_3      haloacid dehalogenase-like hydrolase
     0.0005   20.5   0.1     0.0023   18.4   0.0    2.2  2  HAD              haloacid dehalogenase-like hydrolase


Domain annotation for each model (and alignments):
>> Cation_ATPase_C  Cation transporting ATPase, C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  168.7   1.5   4.1e-53   1.1e-49       2     182 .]     807    1030 ..     806    1030 .. 0.97

  Alignments for each domain:
  == domain 1  score: 168.7 bits;  conditional E-value: 4.1e-53
  Cation_ATPase_C    2 lplsaiqiLwinLvtDllpalaLaleppekdimkrpPrkkkepliskkmlrriliqgllqalvtllvffltlllfgisekenkls....... 86  
                         l ++q+Lw+nLvtD+ pa+aL+++pp++dim+rpPr+ +++li++ +++r +i+g++++++t+ +f +++ ++++se  ++l        
       KOO23673.1  807 EGLIPVQLLWVNLVTDGPPATALGFNPPDADIMSRPPRRADDQLITPWVFFRYMIVGTYVGIATVGIFVYWYVWYDWSEYHHPLVnyselah 898 
                       5689*********************************************************************999998666666899**** PP

  Cation_ATPase_C   87 .....................................snyaqtmaFitlvlsqifnalnlrsrreslfkfsglfsnkllllaillslllqvl 141 
                                                            ++ a+tm + +lv++++fna+n+ s++ sl++ +  + n++lllai++s++ + +
       KOO23673.1  899 wgkctefkgfkpdfkpwvahggpdlsatpcdyfraagKKTASTMSLAVLVVIEMFNAMNAISEDGSLLS-MPPWVNPYLLLAIVISMITTYA 989 
                       *********************************************************************.9999****************** PP

  Cation_ATPase_C  142 ivyvpglnavfgtaplsleewlialllalvvllvdelvKll 182 
                       i+yvp ++a+f+++pl+ ++w++++++++ v+l+de++Kl+
       KOO23673.1  990 IIYVPAFAAMFSIVPLTKNDWILVIAWSVPVILIDEVLKLF 1030
                       ***************************************97 PP

>> E1-E2_ATPase  E1-E2 ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.9   0.0     0.055   1.4e+02     114     157 ..      52      95 ..      22     102 .. 0.80
   2 !  164.8   0.5   5.7e-52   1.4e-48       2     181 .]     120     326 ..     119     326 .. 0.95
   3 ?   -1.5   0.0      0.62   1.6e+03      64      90 ..     670     716 ..     636     718 .. 0.63
   4 ?   -4.8   3.9       6.1   1.6e+04     118     161 ..     984    1025 ..     975    1031 .. 0.66

  Alignments for each domain:
  == domain 1  score: 1.9 bits;  conditional E-value: 0.055
                   HHHHHHHHHHHHHHHHHHHHHHS-STTTSSTTHHHHHHHHHHHH CS
  E1-E2_ATPase 114 kldklgkvlvpvvlliallvflialllgkslaeallralallva 157
                    l+++   lv++ l +a l f++a++  ++  ea+++ +++l++
    KOO23673.1  52 VLQQFDDLLVKILLGAATLSFVLAFFEDHEGLEAFVEPFVILLI 95 
                   4677888899************************9995555544 PP

  == domain 2  score: 164.8 bits;  conditional E-value: 5.7e-52
                   SS--EEEEE-TTS.-EEEEGGG--TTSEEEEETT-B--SEEEEEEE-S...EEE-TTTS---S-EE-............G-TTEE-TT-EEEE-EEE CS
  E1-E2_ATPase   2 llpptakvirdgt.eeeidakelvpGDivllkagdrvpaDgrivegsa...evdesaLTGEslpvek............ekgdmvfsGtvvvsgeak 82 
                   l++ t+++irdg  + e +a+elvpGD+v ++ gd+vpaD+r+++ ++   + de +LTGEs+ v k            +k++m+fsGt+v +g+++
    KOO23673.1 120 LQECTCQCIRDGAlIPELPAAELVPGDVVNINVGDKVPADVRVMKLKTtsvRTDEGSLTGESETVMKtteavaeeariqDKKNMMFSGTTVSNGNCI 216
                   6778999*****71568***************************977666799*************************99***************** PP

                   EEEEE-TTTSTTTTTSTTS----..----HHHHHHHHHHHHHHHHHHHHHHHHHHS-STTTSSTT.........HHHHHHHHHHHHHS-TTHHHHHH CS
  E1-E2_ATPase  83 avVtatgedtelgkiarlveeak..skktplqkkldklgkvlvpvvlliallvflialllgksla.........eallralallvaaiPcaLplavp 168
                   avVtatg+ te+gki + v++a+  ++ktpl +k+d +g+ l++v++ i+++v+++++  + +++         ++l  a+al vaaiP++Lp++++
    KOO23673.1 217 AVVTATGMRTEIGKIQANVQKAAedEEKTPLGQKIDAFGELLAKVIFYICIAVWVMNFRQFSDPVhggfwkgliFYLKIAVALGVAAIPEGLPAVIT 313
                   **********************9999*********************************9999999*******999999****************** PP

                   HHHHHHHHHHHHT CS
  E1-E2_ATPase 169 lalalgarrlakk 181
                   l+lalg+r++ k+
    KOO23673.1 314 LCLALGTRKMVKR 326
                   **********885 PP

  == domain 3  score: -1.5 bits;  conditional E-value: 0.62
                   -....................G-TTEE-TT-EEEE-EEEEEEEE-TT CS
  E1-E2_ATPase  64 k....................ekgdmvfsGtvvvsgeakavVtatge 90 
                                        + ++mvfs t   +++a ++ ++t+ 
    KOO23673.1 670 SftgadffnlaeeervklltlTHKNMVFSRTEPRDKQALVKMLRTAG 716
                   04444444444556666677789999**9999999999999999875 PP

  == domain 4  score: -4.8 bits;  conditional E-value: 6.1
                    HHHHHHHHHHHHHHHHHHS-STTTSSTTHHHHHHHHHHHHHS-T CS
  E1-E2_ATPase  118 lgkvlvpvvlliallvflialllgkslaeallralallvaaiPc 161 
                    ++ +++++ + +++++f i +l+++++  +l+ a ++ v+ i +
    KOO23673.1  984 MITTYAIIYVPAFAAMFSIVPLTKNDW--ILVIAWSVPVILIDE 1025
                    455677777777777777777777776..555577777776655 PP

>> Cation_ATPase_N  Cation transporter/ATPase, N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.5   0.2   9.7e-22   2.5e-18       2      69 .]       4      71 ..       3      71 .. 0.98
   2 ?    0.3   0.1      0.23   5.8e+02      51      64 ..      83      96 ..      81      98 .. 0.89
   3 ?   -1.9   0.0       1.1   2.8e+03      46      58 ..     269     281 ..     268     281 .. 0.90

  Alignments for each domain:
  == domain 1  score: 65.5 bits;  conditional E-value: 9.7e-22
  Cation_ATPase_N  2 halsleevlekLetdlenGLtqaeaaerlkkyGpNelkekkkkslwvkllkqftnplvilLlvaalvs 69
                     ++++ ++vl++ +++l +GL++ ++++++++yG+Nel++++ ++lw+++l+qf ++lv +Ll aa +s
       KOO23673.1  4 WSQDTDAVLASHNVTLAKGLSSTQVEKLRAEYGSNELEQEEGTPLWKLVLQQFDDLLVKILLGAATLS 71
                     8999*************************************************************997 PP

  == domain 2  score: 0.3 bits;  conditional E-value: 0.23
  Cation_ATPase_N 51 lkqftnplvilLlv 64
                     l++f  p+vilL+ 
       KOO23673.1 83 LEAFVEPFVILLIL 96
                     789*********96 PP

  == domain 3  score: -1.9 bits;  conditional E-value: 1.1
  Cation_ATPase_N  46 lwvkllkqftnpl 58 
                      +wv+ ++qf++p+
       KOO23673.1 269 VWVMNFRQFSDPV 281
                      699********95 PP

>> Cation_ATPase  Cation transport ATPase (P-type)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.5   0.0   1.2e-20     3e-17       1      91 []     406     538 ..     406     538 .. 0.96

  Alignments for each domain:
  == domain 1  score: 62.5 bits;  conditional E-value: 1.2e-20
  Cation_ATPase   1 ilcNsaafsensekdevkllGnktEsALlvlaekl...............gldteelreetkkvqeipFnssrKrmsvvlkle............. 68 
                    +lcN+a +++n+ + +++ +G++tE+AL vl+ek+               +  +e + + +++ ++++F+++rK+ms+++                
     KOO23673.1 406 ALCNQAVIRYNAAETKYERVGEPTEAALKVLVEKIgldgvpkptdpaeacSAANEHWMKLYPHQATLEFSRDRKSMSTLCGFApapagdavssgkn 501
                    69********************************************888777778888889999*****************99************* PP

  Cation_ATPase  69 ..............pekkvrlyvKGApeiilkrCthv 91 
                                    + + l+vKGApe++++rC+hv
     KOO23673.1 502 prnspkrtrptsgaGAGANKLFVKGAPERVIERCSHV 538
                    *************999*******************96 PP

>> Hydrolase  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.0       1.7   4.3e+03      19      53 ..     205     239 ..     183     261 .. 0.71
   2 !   60.2   5.3   1.3e-19   3.3e-16       2     209 ..     343     735 ..     342     736 .. 0.71

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 1.7
                 HHHHHHHHCHHHHHHHHHHHHCHHHHHHHHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   Hydrolase  19 vedvivsaalalaaaletgsehpigkalvaaakar 53 
                    ++vs+  ++a++++tg ++ igk  ++  ka 
  KOO23673.1 205 FSGTTVSNGNCIAVVTATGMRTEIGKIQANVQKAA 239
                 45567777888899999998888887765555555 PP

  == domain 2  score: 60.2 bits;  conditional E-value: 1.3e-19
                 SEEEEESBTTTBCHHHHHHHHHHHHCHHHHHHHHHH..............HHCHHHHHHHHHHHHH........HHHHHHHHHETTTE........... CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..............xxxxxxxxxxxxxxxx........xxxxxxxxxxxxxx........... RF
   Hydrolase   2 ktvvfDkdGTLttgepsvedvivsaalalaaaletg..............sehpigkalvaaakar........sgaltgfatfigrg........... 67 
                 ++++ Dk+GTLtt ++ v+ +      + ++ +e++              + +p   a va+ +a+          a t++                  
  KOO23673.1 343 TVICSDKTGTLTTNQMTVVSLAYPD-TKAGKLTELAvtgtsyapqgelsgTFTPAELAEVAKVCALcnqaviryNAAETKY------Ervgepteaalk 434
                 57999*******9997766644444.3444444444434546666666552222222223333333321132221111222......022233444454 PP

                 ...................HHHHTHHHHHHHHHCHHHHHHHHHHHHHHCHHHHHH............................................ CS
                 ...................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx............................................ RF
   Hydrolase  68 ...................ayaigkpewltaldippdlgaaigsaqsqgrtvall............................................ 103
                                    a    ++ w++                        l                                            
  KOO23673.1 435 vlvekigldgvpkptdpaeACSAANEHWMK------------------------Lyphqatlefsrdrksmstlcgfapapagdavssgknprnspkrt 509
                 444444455555555555444444444444........................044444444445555555567899999999999999999999999 PP

                 ..................................................................................................T CS
                 ..................................................................................................x RF
   Hydrolase 104 ..................................................................................................q 104
                                                                                                                    
  KOO23673.1 510 rptsgagaganklfvkgaperviercshvrlksgevvelkpadrkailatvsemaarplrciglafkdevgelatydgdshpahkmlvdpstfinveqG 608
                 999999999999999999999999999999999999999*******************************************************99976 PP

                 THHHHHHHHHHTHHBHTTHHHHHHHHHHTTEEEEEEESSEHHHHHHHHHHTT.........GGGESEEEEHHCES.......STTT............. CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.........xxxxxxxxxxxxxx.......xxxx............. RF
   Hydrolase 105 aralavftiadplkvkpeaaeavasLkaagievvlltgdnpetaeraanqlG.........ddyfdaviasdiet.......vakp............. 174
                    ++v  i+dp   +pe+  a+a+   agi+vv++tgd + tae++a+++G         +        ++ ++                        
  KOO23673.1 609 MTFVGVAGIKDP--ARPEVPPAIAACETAGIRVVMITGDTQPTAEAIAREIGifkagediaN--------RSFTGadffnlaE--Eervklltlthknm 695
                 699*********..**************************************8666654441........2222233333220..13334455555555 PP

                 .....SHHHHHHHHHHHTSTGGGEEEEESSHHHHHHHHHT CS
                 .....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   Hydrolase 175 .....spegkvaaireLqgkpeevamVGDgvnDaaalaaA 209
                      +p++k+a+++ L+  +e  am GDgvnDa+al++A
  KOO23673.1 696 vfsrtEPRDKQALVKMLRTAGEVPAMTGDGVNDAPALKQA 735
                 55555*************999999**************98 PP

>> Hydrolase_3  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.0      0.73   1.9e+03      23      54 ..     628     659 ..     622     663 .. 0.88
   2 !   20.6   1.1   1.2e-07    0.0003     194     253 ..     707     767 ..     705     769 .. 0.85

  Alignments for each domain:
  == domain 1  score: -1.6 bits;  conditional E-value: 0.73
                  HHHHHHHTTSEEEEE-SS-HHHHHHHHHHCCC CS
  Hydrolase_3  23 aikklkekgikvviATGRslravlpvleelgl 54 
                  ai+ ++ +gi vv  TG    +++ +++e+g+
   KOO23673.1 628 AIAACETAGIRVVMITGDTQPTAEAIAREIGI 659
                  8999*************999999999998875 PP

  == domain 2  score: 20.6 bits;  conditional E-value: 1.2e-07
                  HHHHHCT--GGGEEEEESSGGGHHHHHHSSEEEEET.TS-HHHHHHSSEEE--GGGTHHHH CS
  Hydrolase_3 194 klakelnisleeviafGDgeNDieMLeaaglgvAmg.naseevkkaAdyvtksnnedGVak 253
                  +l+k+l+   e  +  GDg ND + L++a +g+Amg +++e +k+aAd+v ++ n   ++ 
   KOO23673.1 707 ALVKMLRTAGEVPAMTGDGVNDAPALKQAAIGIAMGiSGTEVAKEAADMVLADDNFATIVA 767
                  6777777778888889********************7789999*******99998766665 PP

>> HAD  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.4   0.0   8.8e-07    0.0023      87     188 .]     622     733 ..     605     733 .. 0.64
   2 ?   -3.6   0.0         5   1.3e+04      92     123 ..     781     804 ..     742     811 .. 0.68

  Alignments for each domain:
  == domain 1  score: 18.4 bits;  conditional E-value: 8.8e-07
         HAD  87 dpgalellaahraaGdrvvvvSgglrplvepllaelg...adevlatelevddrltgelglegkpvrgegkvaalre...............wlaaege 167
                 +p++  ++aa+  aG+rvv+++g  +p +e++++e g   a e +a++      +tg    +  + ++e++v+ l                        
  KOO23673.1 622 RPEVPPAIAACETAGIRVVMITGDTQPTAEAIAREIGifkAGEDIANR-----SFTGA---DFFNLAEEERVKLLTLthknmvfsrteprdkQ------ 706
                 488888888888*************************54422225553.....77777...77777777777555554454333333333321...... PP

         HAD 168 gidlee..........vvay.GDspsDlpllr 188
                                 v a  GD+++D p+l+
  KOO23673.1 707 -----AlvkmlrtageVPAMtGDGVNDAPALK 733
                 .....111222222225666688888888875 PP

  == domain 2  score: -3.6 bits;  conditional E-value: 5
         HAD  92 ellaahraaGdrvvvvSgglrplvepll.aelg 123
                 ++++         +++S+++ +++ ++l a+lg
  KOO23673.1 781 AFIR---------YLISSNIGEVASIFLtALLG 804
                 4444.........78888888888888877888 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1050 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       842  (0.046963); expected 358.6 (0.02)
Passed bias filter:                      592  (0.0330191); expected 358.6 (0.02)
Passed Vit filter:                        51  (0.00284455); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.77u 0.30s 00:00:01.07 Elapsed: 00:00:00.45
# Mc/sec: 7048.53
//
Query:       KOO23674.1  [L=495]
Description: methyltransferase fkbm family [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      2e-06   27.9   0.0    3.7e-06   27.1   0.0    1.5  1  Methyltransf_21  Methyltransferase FkbM domain
  ------ inclusion threshold ------
       0.16   11.7   0.5       0.68    9.7   0.0    2.2  3  PanZ             Acetyltransferase (GNAT) domain, PanZ


Domain annotation for each model (and alignments):
>> Methyltransf_21  Methyltransferase FkbM domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.1   0.0   4.1e-10   3.7e-06       2     132 ..     273     409 ..     272     439 .. 0.78

  Alignments for each domain:
  == domain 1  score: 27.1 bits;  conditional E-value: 4.1e-10
  Methyltransf_21   2 vGanigvwdsfanltarlcggggevlaiEPvpnslpkfeklranll..tlavgndvglyelivegksg.....gkyfpfavgdtngfstssvlg 88 
                       Ga +gv  s++++ +   +++g    iE  p    +fe +r  ++  ++ v+ +v + ++ v+ +++     g+   +  + + +fs+s+ lg
       KOO23674.1 273 MGAADGVTGSNTYMLEMCFNWTGLL--IEGSPT---NFELMRTRSGrrSVMVHSSVCNETHTVPFTKHgglvsGRPDIMLPSFMKRFSNSHRLG 361
                      5899999888888887777889988..9**999...99999888779966666555332222222222244557788899999999******** PP

  Methyltransf_21  89 gedaryievpvvtldsf.leei.kksridllkiDvEGaElevLeG..a 132
                      ++ ++ ++vp+     +   ++   ++++++ +DvEGaE  vLeG  a
       KOO23674.1 362 DDGRGIVQVPCQPMNAImAAHGfATEHFHYFSLDVEGAEDRVLEGtdA 409
                      ***************99677779********************88422 PP

>> PanZ  Acetyltransferase (GNAT) domain, PanZ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.2      0.26   2.3e+03      33      74 ..       7      48 ..       2      50 .. 0.85
   2 ?    9.7   0.0   7.6e-05      0.68      19      69 ..     141     191 ..     136     193 .. 0.95
   3 ?   -2.9   0.0       0.6   5.4e+03     110     124 ..     374     388 ..     368     391 .. 0.80

  Alignments for each domain:
  == domain 1  score: -1.7 bits;  conditional E-value: 0.26
        PanZ 33 alteegalfaarFNdRlLgAvkveledkeaelsdlcVRevTR 74
                +l+e++a + +  N  l  A  v+l +++ +   l+V +vTR
  KOO23674.1  7 TLDEQRACVRGECNGTLVDASSVRLIGGADARAGLVVARVTR 48
                577788888889999999999999999999999999999999 PP

  == domain 2  score: 9.7 bits;  conditional E-value: 7.6e-05
        PanZ  19 akIypaqsaealeaalteegalfaarFNdRlLgAvkveledkeaelsdlcV 69 
                 a+++  +s + l+a+l ++    a+ F d  LgA+ ++ + +e+e++ l V
  KOO23674.1 141 ARVWQVASRQLLQAELSARPGERAGPFCDGDLGAALLTNRSGEWEVEGLHV 191
                 799********************************************9988 PP

  == domain 3  score: -2.9 bits;  conditional E-value: 0.6
        PanZ 110 vlqaflealgfaaes 124
                  ++a ++a+gfa+e+
  KOO23674.1 374 PMNAIMAAHGFATEH 388
                 58999******8875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (495 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       302  (0.0168442); expected 358.6 (0.02)
Passed bias filter:                      229  (0.0127726); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.49u 0.22s 00:00:00.71 Elapsed: 00:00:00.41
# Mc/sec: 3666.24
//
Query:       KOO23675.1  [L=578]
Description: u2 small nuclear ribonucleoprotein a [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.5e-56  189.9   0.5    4.4e-56  189.1   0.5    1.3  1  LRR_9          Leucine-rich repeat
    4.7e-12   45.9   8.6    7.9e-06   26.1   5.7    3.6  3  LRR_4          Leucine Rich repeats (2 copies)
    4.9e-09   35.8  15.6    4.4e-07   29.6   6.6    2.9  4  LRR_8          Leucine rich repeat
      0.002   16.9   0.2     0.0033   16.2   0.2    1.2  1  PhoPQ_related  PhoPQ-activated pathogenicity-related protein
  ------ inclusion threshold ------
       0.17   12.0   7.0         67    3.9   0.0    5.0  5  LRR_6          Leucine Rich repeat


Domain annotation for each model (and alignments):
>> LRR_9  Leucine-rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  189.1   0.5   1.2e-59   4.4e-56      13     166 ..     334     487 ..     322     493 .. 0.94

  Alignments for each domain:
  == domain 1  score: 189.1 bits;  conditional E-value: 1.2e-59
       LRR_9  13 aqyinairereldlrgykipvienlGatldqfdtidlsdndirkldgfPllkrlktlllnnnrivriaegleevlPnleelvltnnelqeladldPlas 111
                   ++n++++reldlrg+ki+v+enl at dqfd++dlsdn+i k++ +  l rl  lllnnnr++ri+egl+++lP+l++lvltnn+l  l++l+Pl +
  KOO23675.1 334 FAFLNPLKDRELDLRGNKIAVMENLAATQDQFDSLDLSDNEILKVECMAVLPRLTQLLLNNNRVTRISEGLSKTLPSLKTLVLTNNHLATLTQLEPLGQ 432
                 4589*********************************************************************************************** PP

       LRR_9 112 lkklellsllknpvtnkkeyrlyviyklkqlrlldfrkvklkereeaeklfkskk 166
                 l  l++lsl++npvt+ + yr yvi  l++lr ldf++v+ +er++ae   + ++
  KOO23675.1 433 LAGLTSLSLVDNPVTKAEGYRAYVIALLPKLRTLDFKRVRGAERAAAEAAHRKSR 487
                 ***********************************************99887654 PP

>> LRR_4  Leucine Rich repeats (2 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.7   0.0   0.00032       1.1       4      36 ..     343     375 ..     343     380 .. 0.87
   2 !   26.1   5.7   2.2e-09   7.9e-06       1      43 [.     385     428 ..     385     432 .. 0.89
   3 !    8.6   0.0   0.00074       2.6       3      30 ..     436     468 ..     434     471 .. 0.85

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 0.00032
                 -EEE--SS---E-S-HHH.-TT--EEE-.-S--- CS
       LRR_4   4 evLdLsnNqltdipllek.lpnLkeLdLsgNnli 36 
                 ++LdL++N++   ++l+   ++  +LdLs+N  i
  KOO23675.1 343 RELDLRGNKIAVMENLAAtQDQFDSLDLSDN-EI 375
                 68*************99669********999.44 PP

  == domain 2  score: 26.1 bits;  conditional E-value: 2.2e-09
                 SS--EEE--SS---E-S-.HHH.-TT--EEE-.-S-----GGGGX CS
       LRR_4   1 pnLevLdLsnNqltdipl.lek.lpnLkeLdLsgNnlitdldeLk 43 
                 p+L+ L L+nN++t i+  l+k lp+Lk+L L  Nn + +l+ L+
  KOO23675.1 385 PRLTQLLLNNNRVTRISEgLSKtLPSLKTLVL-TNNHLATLTQLE 428
                 79*****************9988*********.777998887765 PP

  == domain 3  score: 8.6 bits;  conditional E-value: 0.00074
                 --EEE--SS---E-S-HH....H.-TT--EEE- CS
       LRR_4   3 LevLdLsnNqltdiplle....k.lpnLkeLdL 30 
                 L++L+L +N +t+ ++ +      lp+L++Ld 
  KOO23675.1 436 LTSLSLVDNPVTKAEGYRayviAlLPKLRTLDF 468
                 9************99955567766*******95 PP

>> LRR_8  Leucine rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.2   0.1    0.0012       4.4      10      61 .]     325     375 ..     322     375 .. 0.77
   2 !   20.0   1.6   1.2e-07   0.00044       4      60 ..     343     396 ..     341     397 .. 0.95
   3 !   29.6   6.6   1.2e-10   4.4e-07       1      60 [.     385     445 ..     385     446 .. 0.91
   4 ?   -2.9   0.0       1.7   6.2e+03      48      55 ..     460     467 ..     455     469 .. 0.68

  Alignments for each domain:
  == domain 1  score: 7.2 bits;  conditional E-value: 0.0012
                 TS--SEE-TTSSTT-TT--EEE--SS---GGGGGGGTT--S-.EEE--SS-- CS
       LRR_8  10 nNrltslddeaFkglsnLkvLdLsnNllttlspgafsgLpsLrsLdLsgNrL 61 
                  + ++ l+  aF +  + ++LdL+ N++ +++ +  +   + +sLdLs+N +
  KOO23675.1 325 ATLIERLRRFAFLNPLKDRELDLRGNKIAVME-NLAATQDQFDSLDLSDNEI 375
                 56778888888888888889999999999884.7777777888888888875 PP

  == domain 2  score: 20.0 bits;  conditional E-value: 1.2e-07
                 SEEE-TTS--SEE-TTSSTT-TT--EEE--SS---GGGGGGGTT--S-.EEE--SS- CS
       LRR_8   4 tsLdLsnNrltslddeaFkglsnLkvLdLsnNllttlspgafsgLpsLrsLdLsgNr 60 
                 ++LdL+ N++ +++  a +   +  +LdLs+N++  ++  +++ Lp+L++L L++Nr
  KOO23675.1 343 RELDLRGNKIAVMENLAAT-QDQFDSLDLSDNEILKVE--CMAVLPRLTQLLLNNNR 396
                 68*****************.5****************6..****************8 PP

  == domain 3  score: 29.6 bits;  conditional E-value: 1.2e-10
                 TT-SEEE-TTS--SEE-TTSSTT-TT--EEE--SS---GGG.GGGGTT--S-.EEE--SS- CS
       LRR_8   1 pnLtsLdLsnNrltslddeaFkglsnLkvLdLsnNllttls.pgafsgLpsLrsLdLsgNr 60 
                 p+Lt L L+nNr t ++ +  k+l++Lk+L L+nN l tl   + + +L+ L+sL L +N+
  KOO23675.1 385 PRLTQLLLNNNRVTRISEGLSKTLPSLKTLVLTNNHLATLTqLEPLGQLAGLTSLSLVDNP 445
                 79*********************************88886415789999********9996 PP

  == domain 4  score: -2.9 bits;  conditional E-value: 1.7
                 --S-.EEE CS
       LRR_8  48 LpsLrsLd 55 
                 Lp+Lr Ld
  KOO23675.1 460 LPKLRTLD 467
                 67777765 PP

>> PhoPQ_related  PhoPQ-activated pathogenicity-related protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.2   9.1e-07    0.0033     172     206 ..     228     262 ..     217     271 .. 0.86

  Alignments for each domain:
  == domain 1  score: 16.2 bits;  conditional E-value: 9.1e-07
  PhoPQ_related 172 ekFvvsGaSKRGWttwltaivDkrvkaivPvvidi 206
                    ++ v+ G S  GWtt +ta+vD+r+k  +P++  +
     KOO23675.1 228 KHVVLVGLSGGGWTTTVTAAVDPRIKLSIPIAGSV 262
                    678999************************98655 PP

>> LRR_6  Leucine Rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.9   0.0     0.019        67       6      15 ..     343     352 ..     343     353 .. 0.91
   2 ?    2.9   0.3      0.04   1.4e+02       7      15 ..     367     375 ..     366     376 .. 0.93
   3 ?    2.9   0.4     0.039   1.4e+02       3      15 ..     409     421 ..     407     423 .. 0.88
   4 ?    1.2   0.0      0.14     5e+02       5      16 ..     436     447 ..     434     449 .. 0.89
   5 ?   -1.6   0.0       1.1     4e+03       3      10 ..     461     468 ..     460     470 .. 0.82

  Alignments for each domain:
  == domain 1  score: 3.9 bits;  conditional E-value: 0.019
       LRR_6   6 teLdLsgNdI 15 
                 +eLdL+gN+I
  KOO23675.1 343 RELDLRGNKI 352
                 79******99 PP

  == domain 2  score: 2.9 bits;  conditional E-value: 0.04
       LRR_6   7 eLdLsgNdI 15 
                 +LdLs+N+I
  KOO23675.1 367 SLDLSDNEI 375
                 7******98 PP

  == domain 3  score: 2.9 bits;  conditional E-value: 0.039
       LRR_6   3 thLteLdLsgNdI 15 
                 ++L++L L+ N++
  KOO23675.1 409 PSLKTLVLTNNHL 421
                 79*********97 PP

  == domain 4  score: 1.2 bits;  conditional E-value: 0.14
       LRR_6   5 LteLdLsgNdIg 16 
                 Lt+L+L +N ++
  KOO23675.1 436 LTSLSLVDNPVT 447
                 9********887 PP

  == domain 5  score: -1.6 bits;  conditional E-value: 1.1
       LRR_6   3 thLteLdL 10 
                 ++L++Ld 
  KOO23675.1 461 PKLRTLDF 468
                 68*****7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (578 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       456  (0.0254337); expected 358.6 (0.02)
Passed bias filter:                      383  (0.021362); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.57u 0.25s 00:00:00.82 Elapsed: 00:00:00.42
# Mc/sec: 4161.08
//
Query:       KOO23676.1  [L=978]
Description: cysteine synthase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    7.2e-54  183.2   2.5    7.2e-54  183.2   2.5    2.5  3  PALP             Pyridoxal-phosphate dependent enzyme
    7.1e-11   41.2   0.1    4.7e-07   28.7   0.0    2.2  2  Cys_Met_Meta_PP  Cys/Met metabolism PLP-dependent enzyme


Domain annotation for each model (and alignments):
>> PALP  Pyridoxal-phosphate dependent enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  183.2   2.5   8.1e-58   7.2e-54      26     294 .]       2     271 ..       1     271 [. 0.91
   2 ?   -3.6   0.0      0.63   5.6e+03      90     124 ..     443     476 ..     428     489 .. 0.69
   3 ?   -0.8   1.3     0.089     8e+02     213     283 ..     777     844 ..     722     851 .. 0.76

  Alignments for each domain:
  == domain 1  score: 183.2 bits;  conditional E-value: 8.1e-58
                 EEEGGGSTTSBTTHHHHHHHHHHHHTT...TTTSEEEEEBSSHHHHHHHHHHHHHT-EEEEEEETTS-HHHHHHHHHTT-EEEEE....CCHHHHHHHH CS
        PALP  26 lKlEslnptgSfKdRgaeyllarlkeg...tgaktvveassGNhgralAaaaallGlkvtivvpadaspekvallrllGaevvev....ggdydeavaa 117
                 +K+E+ +p+gS+KdR+a  l++++ e    +++ t+v a++GN+g++lA++a++ G+++++ +p++ s++k++llr lGa+v+e+         + +++
  KOO23676.1   2 AKCEHQHPGGSVKDRAAHALIQAAIESgelQPGGTIVQATGGNTGISLAMIAKAKGYRCHLTIPENISNDKKELLRILGATVTECpcvpF---ADPRSY 97 
                 7**********************88888*********************************************************65553...444444 PP

                 ...HHHHHHHSTTCEE--TTTSHHHHHH.HHTHHHHHHHHTTTTEEEEEEE-SSSHHHHHHHHHHHHHSTT-EEEEEEEC..TTCGGTTCCS..S.SS. CS
        PALP 118 ...aaelaaegegaylvsqfdnptvieg.ygtiglEileqlggkpdavvvpvGgGgliaGiaaglkerrpdvrvigvepe..gsdalarslragrrvtv 210
                    a+++a+ ++ga+l +qf+++++  + y+t+g+E+++q+g+++d +v+++G+Gg+iaG++++lk++ + +  + ++p+  g  ++ ++      +  
  KOO23676.1  98 csrAHAIAKATKGAVLPDQFEHVANAKAhYTTTGPELWRQCGQALDGFVCAAGTGGTIAGVSRFLKSAHSACATFLIDPTgsGHKCFVETG-----QFA 191
                 33366899999*********************************************************************76677887777.....334 PP

                 .B.SSS.CCSTCSCGTTCCHHHHSEEEEEEEEEEHHHHHHHHHHHHHHHSB-B-HHHHHHHHHHHHHHHHCCTTCEEEEEEE-B CS
        PALP 211 pvsdtiadglavgspselafelldrlvdeivtvsdeealeamrllarregivvepssaaalaalklreagelkegdrvvviltg 294
                 ++++ ++dg++++   +++     + vd +   +d ea+e++  l r+eg++v+ps+a ++ ++  + a++l++g+rv ++l++
  KOO23676.1 192 SSGSCFIDGIGIS---RRTANFGTAVVDGAFRGDDREAIEMAYYLLRNEGLFVGPSAALNVVGA-VKLARKLGPGSRVATVLCD 271
                 455999****999...7777777778999999********************************.*****************97 PP

  == domain 2  score: -3.6 bits;  conditional E-value: 0.63
                 -HHHHHHHHHTT-EEEEECCHHHHHHHHHHHHHHH CS
        PALP  90 spekvallrllGaevvevggdydeavaaaaelaae 124
                 +pe+ ++l   G  ++ + g++ +++++ ++la+e
  KOO23676.1 443 TPEQERMLAHVGCALIISRGGPPATRQR-ERLAQE 476
                 3689999999999999998887777777.567766 PP

  == domain 3  score: -0.8 bits;  conditional E-value: 0.089
                 .SSS.CCSTCSCGTTCCHHHHSEEEEEEEEEEHHHHHHHHHHHHHHHSB-B-HHHHHHHHHHHHHHHHCCT CS
        PALP 213 sdtiadglavgspselafelldrlvdeivtvsdeealeamrllarregivvepssaaalaalklreagelk 283
                 + t+a +l ++  +++a +ll r  d +  + + ++ + +r+l  ++++ +e+ +a+a+ ++ ++  ++l+
  KOO23676.1 777 GLTTAGALVAN-HAPDAAALLSRARDVGEMLETMATDDQIRRLV-DNHVGTEERCAKAYRVA-MAVGAHLR 844
                 25667777666.8888888999999999999*************.9*************999.66666555 PP

>> Cys_Met_Meta_PP  Cys/Met metabolism PLP-dependent enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.3   0.0     2e-05      0.18      70     115 ..     592     638 ..     571     660 .. 0.78
   2 !   28.7   0.0   5.2e-11   4.7e-07     131     364 ..     694     952 ..     677     954 .. 0.82

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 2e-05
                      EEEESSHHHHHHHHHHTTS-T.TEEEEEESTSSHHHHHHHHHTHHHT CS
  Cys_Met_Meta_PP  70 alavssGmaAiaaailallka.GdeivvsddlYggtqrllkkvlkkl 115
                       +++++G++A++a  +al+   G ++v+s+++Ygg++++ + ++ + 
       KOO23676.1 592 PVCYTAGLSALSALWIALIAGgGADVVMSSTAYGGSSQVTDILAARA 638
                      47899******99988888875889*************999988874 PP

  == domain 2  score: 28.7 bits;  conditional E-value: 5.2e-11
                      HHHCCTTEEEEEEESS-TTTT----HHHHHHHHHHTT......-EEEEEGTT..THTTTS-GGGGT-SE...EEEETTTTTTCSSS--EEEEEE CS
  Cys_Met_Meta_PP 131 ekaikentklvylEtptnpllkvvDiekiaklakkag......vlvvvDntf..aspllqrplklgaDi...vvhSaTKylgGhsdvvaGvivv 213
                      ++ ++  t ++++E+ptnp +kv+D++++a +  ++        l++vD t+  +s ++ ++ +   D+   v+ S++K ++ ++ + aG++v+
       KOO23676.1 694 HEILNGSTTVLFVEAPTNPDMKVPDLPTLATMLAQHAaatgarPLLLVDTTLapMSRVMAKARSAAPDLpvmVLLSMSKSVS-RGLTTAGALVA 786
                      5667889*********************9988766643444556899***9944577999999999895444889****997.56677899998 PP

                      SSCHHHHHHHHHHHHHHT-B--HHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTSTTEEEEE-TTSTTSTTHHHHHHHSSSG-S.EEEEEES CS
  Cys_Met_Meta_PP 214 kgkeelkkelkflqnalGavlspfdawlllrGlkTLslRlerhqenAlkvAefLekhpkvekvyYpglpshpqhelakkqlkgagg.vlsFelk 306
                      ++ ++ +  l+   +++G++l+ ++    +r l   ++  e+  + A +vA    +h + +   + g     +   a+   +g+++  +sF+l 
       KOO23676.1 787 NHAPDAAALLS-RARDVGEMLETMATDDQIRRLVDNHVGTEERCAKAYRVAMAVGAHLRATVREHCGATMGLSTVSAEAASNGYAStTISFNLP 879
                      98677666555.66*******************************************9999999*99999888888888888877679****96 PP

                      SHH........HHHHHHHHC-SS....SEECSS-SSSS-EE..EETTTTTTTTSCHHHHHHTTS-.TTEEEEE CS
  Cys_Met_Meta_PP 307 see........ekakkfvdnlkl....fslaeslGgvesli..elpasmthasipkeereaagvt.ddliRls 364
                        +        + a++fvd+l l    f+  +s+G+ + l+  ++pa+ t  +i++e+++++ v   +l+Rls
       KOO23676.1 880 PPKgtseqqaaALAQRFVDELCLdkarFKPCVSFGQDNGLVycTVPATSTQGAIKAEDKAKQEVGgVQLVRLS 952
                      5555556666666889999998855557789*********944579***********999988852599**98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (978 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       401  (0.022366); expected 358.6 (0.02)
Passed bias filter:                      342  (0.0190752); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.68u 0.26s 00:00:00.94 Elapsed: 00:00:00.44
# Mc/sec: 6695.46
//
Query:       KOO23677.1  [L=204]
Description: hypothetical protein Ctob_003728 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (204 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       426  (0.0237604); expected 358.6 (0.02)
Passed bias filter:                      301  (0.0167884); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.39u 0.28s 00:00:00.67 Elapsed: 00:00:00.42
# Mc/sec: 1441.66
//
Query:       KOO23678.1  [L=449]
Description: cyclase associated protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.5e-61  207.9   0.4    2.5e-61  207.9   0.4    2.5  3  CAP_N     Adenylate cyclase associated (CAP) N terminal
    3.8e-52  176.1   9.5    5.6e-52  175.5   9.5    1.3  1  CAP_C     Adenylate cyclase associated (CAP) C terminal
    7.7e-05   22.4  12.5     0.0087   15.8   3.0    2.3  2  TBCC      Tubulin binding cofactor C
  ------ inclusion threshold ------
       0.26   11.0   4.4        2.1    8.1   4.4    2.4  1  DUF3060   Protein of unknown function (DUF3060)


Domain annotation for each model (and alignments):
>> CAP_N  Adenylate cyclase associated (CAP) N terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  207.9   0.4   5.6e-65   2.5e-61       2     256 ..       7     242 ..       6     247 .. 0.84
   2 ?    2.3   0.1     0.021        96     286     299 ..     245     258 ..     243     260 .. 0.87
   3 ?   -6.3   6.9         4   1.8e+04     219     246 ..     259     287 ..     250     321 .. 0.48

  Alignments for each domain:
  == domain 1  score: 207.9 bits;  conditional E-value: 5.6e-65
                 XXXXXXXXXXXXXXXX..........XXXXXXXXXXXXXXXXXXXXXXXSXH.HHHHHHHHHHHHHHHHHHHHHHHH-H.HHHHHHHHHHHHHHHHHHH CS
       CAP_N   2 tlikRLEaatsrLEdiaisessssasskasssssaaaaaaaaaakaaaaaaaaksveaFdelisgsvkefvelskkigg.evaeqaelvkkafeaqrkf 99 
                 +l+kRLE++t++LE+++            + +++aa+  aaa   a ++++++++v aF++++sg+v+ +v+++++i+  e  +qa+lv+++f+aqr++
  KOO23678.1   7 ALLKRLETVTTKLESMEL-----------HGAGAAAPLVAAA---AVEDERPSPMVDAFNAFLSGPVAAYVNAASAINMpETLNQAKLVQACFQAQRDM 91 
                 79**************32...........1222222222222...222223349***********************9779****************** PP

                 HHHHHHBE---.HHHHH.HHCHHHHHHHHHHHHHHHTTTTSTTHHHHHHHHCGGGGGGGGG--S-HHHHHHHHHHHHHHHHHHHHHHHTTT-HHHHHHH CS
       CAP_N 100 llvaskakkPadseelq.elLkplseaiqkvqeireknrksklfnhLsavsegipalgWvavepkPapyvkemkdaaqFYtNrVlkeykekdkkhveWv 197
                 l++++k+kkP d +++q ++Lk +s+ + +vq+   + r+ + +nh +av+e+ipalgWv+ve++P+p++++m++a  F + ++l  yk kd++h+ ++
  KOO23678.1  92 LVLVAKCKKP-DAATFQnNVLKATSDLLGQVQSAATSDRRAEDYNHRQAVAEAIPALGWVMVEKTPVPHINDMWEAGAFCQTKILTTYKGKDENHITYA 189
                 **********.677776279******************************************************************************* PP

                 HHHHHHHHHHHHHHHHHSTTS----TTSBE.......SSC--XXXXXXX....XXXXXX CS
       CAP_N 198 ksflqilkeLqaYvkeyhttGltWnkkGkdaeealkaaaaaasaaaaggpppPpPpPpp 256
                 k++++i+++L+a+vke+h+tGl Wn+kG+d+++a k   aaa+a++  +   PpP  pp
  KOO23678.1 190 KAVKTIFTDLAAFVKEFHKTGLEWNPKGIDVKDAGK---AAAPAPPPLA---PPPLAPP 242
                 *******************************99854...3333333222...4443344 PP

  == domain 2  score: 2.3 bits;  conditional E-value: 0.021
                 XXXXXXXXXXXXXX CS
       CAP_N 286 GeaiTkgLkkVdks 299
                 G  +T+gLkkV+k 
  KOO23678.1 245 GGPVTSGLKKVTKG 258
                 778*********95 PP

  == domain 3  score: -6.3 bits;  conditional E-value: 4
                 ----TTSB.E.......SSC--XXXXXXX CS
       CAP_N 219 ltWnkkGk.daeealkaaaaaasaaaagg 246
                   W+++   +a+ a  ++ +++++aa+++
  KOO23678.1 259 EDWDPSKYgKAKPAPVPSVPSTPKAATAA 287
                 44443221011111111111111111111 PP

>> CAP_C  Adenylate cyclase associated (CAP) C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  175.5   9.5   1.2e-55   5.6e-52       1     157 []     290     447 ..     290     447 .. 0.97

  Alignments for each domain:
  == domain 1  score: 175.5 bits;  conditional E-value: 1.2e-55
       CAP_C   1 kppklele.gnkwlvenqennkeieieetelkqsvyifkCknstiqikgKvnaitldnckkvsvvvdsvvSsvevincksvkvqvlgkvptisiDktdg 98 
                 kppk+e+  g+kw +enq +n++i i+ +e+kq+vyi+kC +sti++kgK+naitld c+kvs+v+d+vv+++e++nc+s+kv vlg v t++iDk++g
  KOO23678.1 290 KPPKCECVgGKKWEIENQVKNSSISID-AEVKQVVYIYKCLDSTITVKGKCNAITLDGCNKVSIVFDTVVAGIELVNCNSCKVMVLGLVQTVTIDKCSG 387
                 8*******56****************8.*********************************************************************** PP

       CAP_C  99 vqiyLskesldteivtsksseinvsvpk.eedgdykElpipeqfktkikkgklvtevveh 157
                  q+ L+kesl +++vt+k+se nv vp  +e ++ykE++i eqf++k+ + +  t++++h
  KOO23678.1 388 TQVILNKESLGADVVTAKCSETNVVVPGeNEGDEYKEFAIAEQFVSKWTGTTWDTNCMAH 447
                 ***************************9777789***************99999998876 PP

>> TBCC  Tubulin binding cofactor C
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.8   2.1   3.3e-05      0.15       9      54 ..     308     354 ..     299     359 .. 0.61
   2 !   15.8   3.0   1.9e-06    0.0087       4      54 ..     361     413 ..     358     416 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 3.3e-05
                 -BS-EEEE-S--S-.EEEES-BS-EEE----SS-EEEES-BS-EEE- CS
        TBCC   9 lsdctiylldplss.vtiddcknctivlgpvsgsvfiedcenctivv 54 
                 +++++i + +++++ v+i +c ++ti++    +++ +++c+++ iv+
  KOO23678.1 308 VKNSSISIDAEVKQvVYIYKCLDSTITVKGKCNAITLDGCNKVSIVF 354
                 55666666555554245666666666665555666666666666664 PP

  == domain 2  score: 15.8 bits;  conditional E-value: 1.9e-06
                 EEE-S-BS-EEEE-S--S-EEEES-BS-EEE-..---SS-EEEES-BS-EEE- CS
        TBCC   4 vkisnlsdctiylldplssvtiddcknctivl..gpvsgsvfiedcenctivv 54 
                 +++ n+++c++ +l+ +++vtid+c+  +++l        v   +c++ ++vv
  KOO23678.1 361 IELVNCNSCKVMVLGLVQTVTIDKCSGTQVILnkESLGADVVTAKCSETNVVV 413
                 6789***************************9444566677778888888876 PP

>> DUF3060  Protein of unknown function (DUF3060)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.1   4.4   0.00046       2.1       6      36 ..     331     363 ..     329     390 .. 0.86

  Alignments for each domain:
  == domain 1  score: 8.1 bits;  conditional E-value: 0.00046
     DUF3060   6 NtvtltGeCeavtVsGssN.tVtvdsvdk.itv 36 
                  t+t++G+C a+t  G +  ++++d+v + i++
  KOO23678.1 331 STITVKGKCNAITLDGCNKvSIVFDTVVAgIEL 363
                 69**************65427999999887765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (449 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       603  (0.0336327); expected 358.6 (0.02)
Passed bias filter:                      401  (0.022366); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.54u 0.25s 00:00:00.79 Elapsed: 00:00:00.43
# Mc/sec: 3163.71
//
Query:       KOO23679.1  [L=172]
Description: translation initiation inhibitor [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.7e-26   92.5   0.0    3.1e-26   92.3   0.0    1.0  1  YjgF_endoribonc  YjgF/chorismate_mutase-like, putative endori
    1.1e-13   51.3   0.0    1.8e-13   50.6   0.0    1.3  1  Ribonuc_L-PSP    Endoribonuclease L-PSP


Domain annotation for each model (and alignments):
>> YjgF_endoribonc  YjgF/chorismate_mutase-like, putative endoribonuclease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   92.3   0.0   3.5e-30   3.1e-26       1     147 [.      19     169 ..      19     170 .. 0.91

  Alignments for each domain:
  == domain 1  score: 92.3 bits;  conditional E-value: 3.5e-30
                      HHHHHHTT---------SSSS-S..EEEETTEEEE--B--EETT.EE--BS-BTTTB-HHHHHHHHHHHHHHHHHHHHHHHSSGGG-SEEEEEE CS
  YjgF_endoribonc   1 esrlvalGlelpkvaaalGayep..yaivasflttsfqlpylqe.kllyvGllGddvsvseGiaaarlaalnalaqlkeaaGelarvkrlirle 91 
                      e+r+  lG  lp+ +   Gay+    +     +  ++ lp++++ k  +vG++G++++v+e    a+++ l+ +a lk a G+l +vk++++++
       KOO23679.1  19 EARIAKLGYTLPELPQPAGAYKLavVSNEDGWVYLAGHLPFKEDmKSVHVGRVGAEFTVDEAAELAKIVGLELIASLKLAIGDLDKVKKIVKVN 112
                      78999****************8511344455799*******9763789********************************************** PP

                      EEE-B-TT.---HHHHHHHHHHHHHHHHGGGG--EEEEEE-SS-GGGBSEEEEEEEE CS
  YjgF_endoribonc  92 Gvlnvtqd.yiempkvldaasdlllevlGeaGrhartiltnhvmplnalvllylfae 147
                      G+++v  + +   pkvl++ s+ll e++ e+G har++++   +pl+ +v + + a+
       KOO23679.1 113 GYIAVADSsVTALPKVLNGCSNLLGEIFEERGVHARVAVGVTTLPLGVPVEIDMIAQ 169
                      ****987616689*************************************9999886 PP

>> Ribonuc_L-PSP  Endoribonuclease L-PSP
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.6   0.0     2e-17   1.8e-13       5     120 ..      33     169 ..      30     170 .. 0.84

  Alignments for each domain:
  == domain 1  score: 50.6 bits;  conditional E-value: 2e-17
                    TTTSSS-BSEEE..ETTEEEEEEE-SB-T.....TTSCB..-SSHHHHHHHHHHHHHHHHHHTT--GGG......EEEEEEEESSGGG.HHHHHHH CS
  Ribonuc_L-PSP   5 paaaapYsqavk..agnlvyvsGqlpldp.....etgelv.egdveeqtrqalenlkavLaaagaslsd......vVkvtvFladied.faevnev 85 
                    p++a++Y  av    +++vy++G+lp+++     + g+++ e +v e ++ a     +++a+  ++++d      +Vkv+ ++a +++  +++ +v
     KOO23679.1  33 PQPAGAYKLAVVsnEDGWVYLAGHLPFKEdmksvHVGRVGaEFTVDEAAELAKIVGLELIASLKLAIGDldkvkkIVKVNGYIAVADSsVTALPKV 128
                    789******88856779***********98887777777766666666666666666777777777777888999********9998889****** PP

                    HHHHSSSS.....T.S--EEEEEE-SBSGGG-SEEEEEEEE CS
  Ribonuc_L-PSP  86 yaeafdel.....k.eaParsaveVaaLpkgakvEIeaiav 120
                    +++ ++ l     + + +ar+av+V++Lp g+ vEI++ia 
     KOO23679.1 129 LNGCSNLLgeifeErGVHARVAVGVTTLPLGVPVEIDMIAQ 169
                    ***99999999974699**********************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (172 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       276  (0.0153941); expected 358.6 (0.02)
Passed bias filter:                      253  (0.0141112); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.37u 0.27s 00:00:00.64 Elapsed: 00:00:00.40
# Mc/sec: 1290.92
//
Query:       KOO23680.1  [L=373]
Description: malate l-lactate dehydrogenase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    9.2e-79  265.0   6.0    1.1e-78  264.8   6.0    1.0  1  Ldh_2     Malate/L-lactate dehydrogenase
  ------ inclusion threshold ------
      0.031   14.5   0.0      0.068   13.5   0.0    1.5  1  PucR      Purine catabolism regulatory protein-like family


Domain annotation for each model (and alignments):
>> Ldh_2  Malate/L-lactate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  264.8   6.0   1.2e-82   1.1e-78       1     332 [.      43     363 ..      43     364 .. 0.95

  Alignments for each domain:
  == domain 1  score: 264.8 bits;  conditional E-value: 1.2e-82
                 E-HHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHTT-GGGTGGGHHHHHHHHHTTSSBSS---EEEEEETTEEEEEETTE-HHHHHHHHHHHHHHHH CS
       Ldh_2   1 vsaeelralveavleaagvseedAeivadvlveadlrGvdsHGvarlpryverlkkgkinpkaepevvketpavavvDgdnglGqvvakkamelaieka 99 
                 vs++e+r+ ++a+l+++g ++edA++ a+++++a+l G + +G++++  y   l +     +++p+v++et+++av+++++ +G+++a  a +la++k 
  KOO23680.1  43 VSIAEARSKTAAALRKIGWDDEDAALQAEIMTAAELCG-NNQGLVKM--YNPALMA-PSPGTSKPTVERETATSAVINANQSPGMLAAVSAADLALKKL 137
                 57899*********************************.89999888..6666665.5577899*********************************** PP

                 HHHS..EEEEEEEEE.E--SSHHHHHHHHHHTTSEEEEEEEESSEB--TTBSS--BE--EEEEEEEETTSSEEEEEEESBSS-HHHHHHHHHCT---ST CS
       Ldh_2 100 kehG..igivavrns.nhfGaagyyaemaaeaGligiaftnssplvaptggkeavlGtNPiafaaPakeeepfvlDmAtSvvargkievaarkgkpiPe 195
                 k++G  i+iv++ n+ +  G ++ y+e++a++G+igia++ns+++va+  g ++v+GtNPiaf++P+++++p  +DmAtS++a   +   ++kg+p+Pe
  KOO23680.1 138 KSQGgpIAIVTAYNTsTSSGQLAFYVERMAKQGVIGIALANSPEFVAAAPGGKPVFGTNPIAFGIPQAHGPPQTFDMATSAIALFGVLTSKAKGQPLPE 236
                 ***999****999986899******************************************************************************** PP

                 TSEEETTSSEES-HHHHHCCCEE-BTTTHHHHHHHHHHHHHHTCTTTS-HGGGSSSSSSCTSS-SSEEEEEEEEEGGGTT.HHHHHHHHHHHHHHHHTS CS
       Ldh_2 196 gwalDadGnpttDPaaaleggallplGghKGyglalmvelLagvLsgaatgkevsgsedeekkpaklghffiaidpeafgdaeefkervdalldelras 294
                 g+a+ +dG+ t D+a+alegga++++GghKG+gl+l+velLagvLsg+a+  +v +++     ++  gh+fiai+p+ +   ++f+ +++++l++++as
  KOO23680.1 237 GVAYGKDGKWTVDAAEALEGGAIATFGGHKGAGLSLCVELLAGVLSGGAVLGQVPSKK----LAKSWGHTFIAIQPDLL--VDDFEGKAASVLAAVKAS 329
                 ***************************************************8877766....33336************..89**************** PP

                 -BSTTTSS---TTHHHHHHHHHHHHH-.EEEEHHHHHHH CS
       Ldh_2 295 ppaegadevllPGereaaaraerlkeG.ipldeavleel 332
                  p      ++lPGe +a+++a+r+++  +p++ ++++++
  KOO23680.1 330 GPS-----IRLPGESSAKTAAQRSADDaLPIPTKIWQSI 363
                 997.....9*************999988********987 PP

>> PucR  Purine catabolism regulatory protein-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.0   7.6e-06     0.068      40      79 ..     140     179 ..     123     188 .. 0.83

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 7.6e-06
        PucR  40 rggeLllttglalkddpealaelvrelaeagvaaLviklg 79 
                 +gg + ++t+++ +++  +la +v+++a++gv ++++ + 
  KOO23680.1 140 QGGPIAIVTAYNTSTSSGQLAFYVERMAKQGVIGIALANS 179
                 78999********99*********************9984 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (373 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       388  (0.0216409); expected 358.6 (0.02)
Passed bias filter:                      280  (0.0156172); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.46u 0.24s 00:00:00.70 Elapsed: 00:00:00.41
# Mc/sec: 2763.72
//
Query:       KOO23681.1  [L=674]
Description: hypothetical protein Ctob_003729 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (674 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       539  (0.030063); expected 358.6 (0.02)
Passed bias filter:                      351  (0.0195772); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.54u 0.26s 00:00:00.80 Elapsed: 00:00:00.41
# Mc/sec: 4908.81
//
Query:       KOO23682.1  [L=1144]
Description: ATP-binding cassette sub-family f member 1-like protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    5.2e-42  143.6   0.0    3.5e-20   72.9   0.0    3.1  2  ABC_tran         ABC transporter
    9.6e-11   41.5   0.0     0.0055   16.2   0.0    3.3  3  SMC_N            RecF/RecN/SMC N terminal domain
    1.4e-10   41.5  14.8     0.0024   17.8   0.2    4.3  4  AAA_21           AAA domain, putative AbiEii toxin, Type IV T
    3.1e-08   33.9   0.0    7.7e-08   32.6   0.0    1.6  1  Nucleotid_trans  Nucleotide-diphospho-sugar transferase
    2.2e-07   30.4   4.0    0.00088   19.0   0.0    3.8  3  TPR_1            Tetratricopeptide repeat
    6.2e-06   26.1   3.9    6.2e-06   26.1   3.9    4.0  2  ABC_tran_Xtn     ABC transporter
      9e-06   25.7   0.1       0.17   11.8   0.1    2.7  2  NACHT            NACHT domain
      3e-05   23.7   0.2       0.45   10.0   0.1    3.6  3  AAA_25           AAA domain
    6.5e-05   22.6   0.3      0.014   15.1   0.0    2.8  2  AAA_29           P-loop containing region of AAA domain
     0.0001   22.3   0.0     0.0017   18.3   0.0    2.6  2  RsgA_GTPase      RsgA GTPase
    0.00055   20.5  16.9      0.089   13.3   0.0    4.4  3  AAA_23           AAA domain
    0.00069   20.0   0.1        1.7    9.1   0.1    3.3  2  AAA              ATPase family associated with various cellul
     0.0016   18.2   0.3      0.015   15.0   0.0    2.4  2  AAA_15           AAA ATPase domain
     0.0021   18.1   0.4       0.16   12.3   0.0    3.7  2  TPR_8            Tetratricopeptide repeat
     0.0026   17.7  10.6      0.022   14.8   0.0    4.0  2  TPR_2            Tetratricopeptide repeat
     0.0042   17.6   1.7     0.0042   17.6   1.7    3.5  1  TPR_19           Tetratricopeptide repeat
     0.0045   17.7   0.1     0.0045   17.7   0.1    5.5  2  TPR_14           Tetratricopeptide repeat
     0.0051   17.1   0.2     0.0051   17.1   0.2    3.6  1  TPR_12           Tetratricopeptide repeat
     0.0061   16.2   3.0        0.1   12.3   0.5    2.8  2  TPR_11           TPR repeat
     0.0063   16.9   0.0       0.18   12.2   0.0    2.5  2  RNA_helicase     RNA helicase
      0.007   16.6   0.3        2.2    8.6   0.0    3.2  2  AAA_22           AAA domain
  ------ inclusion threshold ------
      0.011   16.0   0.2        2.9    8.5   0.0    3.0  2  TPR_17           Tetratricopeptide repeat
      0.014   15.2   0.0        2.4    7.9   0.0    2.7  2  AAA_24           AAA domain
      0.019   15.0   1.0      0.052   13.6   0.1    2.2  2  MMR_HSR1         50S ribosome-binding GTPase
       0.11   12.1   0.0        1.2    8.6   0.0    2.2  2  AAA_7            P-loop containing dynein motor region
       0.49   10.8   0.0       0.49   10.8   0.0    4.2  4  AAA_16           AAA ATPase domain
       0.67   10.1   0.0       0.67   10.1   0.0    3.2  2  AAA_33           AAA domain
        1.5    8.8   5.0        0.3   11.1   0.1    2.4  1  Dynamin_N        Dynamin family
         10    6.9   7.9        3.1    8.6   0.0    3.5  3  PIN_3            PIN domain


Domain annotation for each model (and alignments):
>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.3   0.0     3e-21   1.9e-18       3     137 .]     581     731 ..     579     731 .. 0.84
   2 !   72.9   0.0   5.6e-23   3.5e-20       3     137 .]     897    1033 ..     895    1033 .. 0.85

  Alignments for each domain:
  == domain 1  score: 67.3 bits;  conditional E-value: 3e-21
                 EEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--...SEEEEEETTCEGGG........B-HHHCCHCEEEE-SS--S-TTSB.HHHH.......HHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxx........xxxxxxxxxxxxxxxxxxxxxxxx.xxxx.......xxx RF
    ABC_tran   3 nvslklkegekvaivGenGaGKStLlkllagllkp...teGeilldgkdlke........qeleslrkeigvlpqepqlfpelt.vren.......esd 82 
                 + +l+l++g+++++v +nG GK+tLlk++          + ++l+ +++++           l+s +k+++ l +e +l ++l  v++        + +
  KOO23682.1 581 DAKLSLRAGHRYGLVAPNGKGKTTLLKAIGSRALTglpRSLDVLYVEQEVRAaagesaieALLRSDSKRSSLLAEELRLESQLVaVYDAleahgseACE 679
                 6789************************9776654455555666666666666666665588899999999*****99999997667779999999999 PP

                 TCHHHHHHHSTTGGTTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  83 eeiekalsklglkelkdtvvksspssLSgGqkqrvalarallkkpkllllDEpta 137
                 +++  +l+ lg +e k++     +++LSgG++ r+alaral+ +p+llllDEpt+
  KOO23682.1 680 ARARSLLAGLGFDEAKQEAP---TTTLSGGWRMRLALARALFLQPELLLLDEPTN 731
                 99999999999999666655...8******************************8 PP

  == domain 2  score: 72.9 bits;  conditional E-value: 5.6e-23
                  EEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGGB-HHHCCHCEEEE-SS..--S-TTSBHHHH..........HHHTCHHH CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxx..........xxxxxxxx RF
    ABC_tran    3 nvslklkegekvaivGenGaGKStLlkllagllkpteGeilldgkdlkeqeleslrkeigvlpqe..pqlfpeltvren..........esdeeiek 87  
                   v+++l+ +++va+vG+nG+GKSt+l+ll+g+l p +Ge+          +    r ++g + q+  + l  +l+  e+            +   ++
  KOO23682.1  897 SVDFELSMDSRVALVGPNGCGKSTFLNLLMGNLAPSSGEV----------DQANGRLRVGGYAQHlvEALPGGLSPVEHlhsllglkpdRGSPTYQE 983 
                  799*************************************..........445556666666666655666666655556777887555566669** PP

                  HHHHSTTGGTTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTTT CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran   88 alsklglkelkdtvvksspssLSgGqkqrvalarallkkpkllllDEpta 137 
                  ++++lg k+l+    + + + LSgGqk rv+ a +   +p +ll+DEpt+
  KOO23682.1  984 VRHELGTKGLPSFAHELKIKDLSGGQKARVVFASLSSMRPHVLLMDEPTN 1033
                  *********9999998899******************************8 PP

>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.0   8.9e-06    0.0055      29     204 ..     594     765 ..     581     779 .. 0.84
   2 !    9.6   0.0   0.00089      0.55      26      42 ..     907     923 ..     895     933 .. 0.81
   3 !   11.5   0.0   0.00024      0.15     131     205 ..     999    1067 ..     977    1074 .. 0.82

  Alignments for each domain:
  == domain 1  score: 16.2 bits;  conditional E-value: 8.9e-06
                 EEESTTSSHHHHHHHHHHHCTT.TTTTTTCHCCCCCC--BTTCSSTTEEEEEEEEEETTEESSSSSSCEEEEEEEETTSEEEEEETTEEE-HHHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N  29 ivGpNGSGKsnlldAilFvLGersakklrseklsdlihkskekasvkkaeveitfdnedkklkiekeevsisrrvkrkgeseykingkevtkkevsell 127
                 +v pNG GK+ ll Ai    G r+ + l  ++l+ l  +++ +a++ +  +e +++ ++k+++  +ee+ ++ +++   +   +  g+e+ ++  ++ll
  KOO23682.1 594 LVAPNGKGKTTLLKAI----GSRALTGLP-RSLDVLYVEQEVRAAAGESAIEALLRSDSKRSSLLAEELRLESQLVAVYD-ALEAHGSEACEARARSLL 686
                 788*************....988887774.445555555789999999*******9999999*************99999.8999************** PP

                 HCTT-STT.......CS-HHHHHHHHHHHHHHHHCCS--SEEEECTTTTTS-HHHHHHHHHHHHHHCTTSEEEEE-SSHHHCCC CS
                 xxxxxxxx.......xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N 128 esagiske.......lLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvkkvaellkeksknaQfivislreemlek 204
                 +  g+++        +LSgG +      L +A   + +  l llDe   +LD      + e l +++ ++ ++++s++++++ +
  KOO23682.1 687 AGLGFDEAkqeapttTLSGGWRM----RLALARALFLQPELLLLDEPTNHLDLDACIWLQEHLSHEK-KSTMLIVSHDQQHFLN 765
                 *****9988999999*****885....444455555566799*********************9877.6778889999887755 PP

  == domain 2  score: 9.6 bits;  conditional E-value: 0.00089
                 EEEEEESTTSSHHHHHH CS
                 xxxxxxxxxxxxxxxxx RF
       SMC_N  26 ftaivGpNGSGKsnlld 42 
                   a+vGpNG+GKs +l+
  KOO23682.1 907 RVALVGPNGCGKSTFLN 923
                 5689*********9986 PP

  == domain 3  score: 11.5 bits;  conditional E-value: 0.00024
                  T-STTCS-HHHHHHHHHHHHHH.HHCCS--SEEEECTTTTTS-HHHHHHHHHHHHHHCTTSEEEEE-SSHHHCCC- CS
                  xxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N  131 giskelLSgGektLvalaLlfA.iqkvkpaplyllDeidaaLDeknvkkvaellkeksknaQfivislreemleka 205 
                  +++++ LSgG+k+     ++fA + +++p+ + l+De   +LD + + ++ + ++e +    ++ is+++++l++ 
  KOO23682.1  999 ELKIKDLSGGQKA----RVVFAsLSSMRPH-VLLMDEPTNHLDIESIDALISAVNEFE--GGVVLISHDRRLLQRT 1067
                  678889******8....5677724555665.669********************9998..8889999999888765 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.3   0.2    0.0029       1.8       3      20 ..     593     610 ..     592     662 .. 0.77
   2 !    9.8   0.8     0.001      0.63     244     297 ..     710     758 ..     649     765 .. 0.76
   3 !   13.6   0.2   7.2e-05     0.045       3      19 ..     909     925 ..     908     947 .. 0.81
   4 !   17.8   0.2   3.8e-06    0.0024     225     302 ..     993    1064 ..     949    1065 .. 0.86

  Alignments for each domain:
  == domain 1  score: 8.3 bits;  conditional E-value: 0.0029
      AAA_21   3 vliGpNgsGKSnLLdald 20 
                 +l+ pNg GK++LL+a+ 
  KOO23682.1 593 GLVAPNGKGKTTLLKAIG 610
                 5899*************4 PP

  == domain 2  score: 9.8 bits;  conditional E-value: 0.001
      AAA_21 244 llalltallralkkgsllliDEpEngLHPkllrrllellkelsrngaQviltTH 297
                  lal+ al+ ++    lll+DEp n+L+  +   l e l+ +++  +  ++++H
  KOO23682.1 710 RLALARALFLQP---ELLLLDEPTNHLDLDACIWLQEHLSHEKK--STMLIVSH 758
                 357777777777...9************9655555555545544..55555555 PP

  == domain 3  score: 13.6 bits;  conditional E-value: 7.2e-05
      AAA_21   3 vliGpNgsGKSnLLdal 19 
                 +l+GpNg+GKS++L +l
  KOO23682.1 909 ALVGPNGCGKSTFLNLL 925
                 79************998 PP

  == domain 4  score: 17.8 bits;  conditional E-value: 3.8e-06
      AAA_21  225 engdgqelparelSdGtkrllalltallralkkgsllliDEpEngLHPkllrrllellkelsrngaQviltTHSplll 302 
                   +++ +el + +lS G+k    ++++l + ++   +ll DEp n+L+ + +  l+  ++e +     v+l +H+  ll
  KOO23682.1  993 LPSFAHELKIKDLSGGQKAR-VVFASLSSMRP--HVLLMDEPTNHLDIESIDALISAVNEFEG---GVVLISHDRRLL 1064
                  56788999999*******99.89999999998..9**************************99...99*****97766 PP

>> Nucleotid_trans  Nucleotide-diphospho-sugar transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.6   0.0   1.2e-10   7.7e-08      27     157 ..      63     193 ..      51     240 .. 0.75

  Alignments for each domain:
  == domain 1  score: 32.6 bits;  conditional E-value: 1.2e-10
  Nucleotid_trans  27 lyltskgkdsakkdeefksktykkmswrkvrlllel...lklGynvllsDvDvvWlrnpfpllkyedaDvlvssDsldgttadelknliNsGff 117
                      l+++++   + ++   f s +++++++ kv+ + +    l +G +v+++D+Dvv lr  + ll    +++ ++         +  ++ +N+G+f
       KOO23682.1  63 LKMYQP-SANVSVTGVFRSSRWMEVVRAKVSWVATTvssLPTGATVMFTDTDVVPLRPLTALL-PLPHNLTFMREPPGHG-GRTGRHIVNTGLF 153
                      555555.55666999999999999999999987765233669*********************.6778888888766654.55556699***** PP

  Nucleotid_trans 118 fvrateatkallkkwaeelasesglwDqdvfnlllregaa 157
                       +  + +t +++++wa    ++++l+Dqd+ n +l  + +
       KOO23682.1 154 AMHVSASTRKFMNHWAWLTRRYPKLMDQDIANWVLLAKPG 193
                      ******************************9987766544 PP

>> TPR_1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.1   0.0       1.5   9.2e+02      18      29 ..      53      64 ..      52      67 .. 0.79
   2 !    8.8   1.1    0.0023       1.4      10      30 ..     268     288 ..     266     290 .. 0.90
   3 !   19.0   0.0   1.4e-06   0.00088       3      34 .]     297     328 ..     295     328 .. 0.91

  Alignments for each domain:
  == domain 1  score: -0.1 bits;  conditional E-value: 1.5
                HHHHHHHHHHHH CS
       TPR_1 18 deAleyyekALe 29
                d A+eyy+  L+
  KOO23682.1 53 DGAIEYYQLHLK 64
                66*****97776 PP

  == domain 2  score: 8.8 bits;  conditional E-value: 0.0023
                 HHHHTT-HHHHHHHHHHHHHH CS
       TPR_1  10 ayfklgkydeAleyyekALel 30 
                  ++k g +deA ++++ AL+l
  KOO23682.1 268 KLYKAGALDEAFACCRNALKL 288
                 589*****************9 PP

  == domain 3  score: 19.0 bits;  conditional E-value: 1.4e-06
                 HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH CS
       TPR_1   3 alynlGnayfklgkydeAleyyekALelnPnn 34 
                 ++  +++++  + k+++A+++++kAL+++ nn
  KOO23682.1 297 VHLTIAAILTAQDKPEQAEKAFSKALSIDANN 328
                 677899***********************887 PP

>> ABC_tran_Xtn  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   7.2       9.1   5.6e+03      23      58 ..     397     432 ..     389     443 .. 0.73
   2 !   26.1   3.9     1e-08   6.2e-06       3      72 ..     774     843 ..     772     854 .. 0.80

  Alignments for each domain:
  == domain 1  score: -2.6 bits;  conditional E-value: 9.1
  ABC_tran_Xtn  23 eerleqqqkayekqqkeikkleefIerfrakakkak 58 
                   +e+ e+++++++kq++  k +ee  +  +aka+  k
    KOO23682.1 397 AEKAEAAARRAAKQEAAAKATEEKAAATKAKAAARK 432
                   677888888888888888888887777777664333 PP

  == domain 2  score: 26.1 bits;  conditional E-value: 1e-08
  ABC_tran_Xtn   3 lengklteYkGnYseyleekeerleqqqkayekqqkeikkleefIerfrakakkakqaqsrekaLeklek 72 
                   +e++kl+++ G+Y+++ +  +   ++ +k++ ++qke++kl++   + +a+a   ++ ++++ + e ++ 
    KOO23682.1 774 IEQRKLHYFAGDYDDFTKRHDSFVAELRKKAMAEQKELQKLQQALSKGGAEAGSKSARKQMKERVEEIKA 843
                   89************************************************77555555555555555533 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.8   0.1   0.00028      0.17       9     112 ..     598     689 ..     594     735 .. 0.85
   2 !   11.0   0.0   0.00049       0.3       2      26 ..     907     931 ..     906     940 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 0.00028
                 TTTCHHHHHHHHHHHHCTS-SCCCC-SEEEEEETTTTTTS-...-HCHHHCCCCTS--SSS-CCHHHHCCSCCCEEEEEE-STT-SS-TCH........ CS
       NACHT   9 aGsGKTtLlqklalawaegklpqgafklvFflslrelsrsgnarsladllfsqlpepaapvsevwavllelperlLlilDglDelvtdlgqkekqpvrt 107
                 +G+GKTtLl+ + + + +g + +     v+++++  +   g++  +  ll+s+ + ++   +e     l+l+ +l+ + D+l+   ++ ++   +++r 
  KOO23682.1 598 NGKGKTTLLKAIGSRALTGLPRS---LDVLYVEQEVRAAAGES-AIEALLRSDSKRSSLLAEE-----LRLESQLVAVYDALEAHGSEACE---ARARS 684
                 8**************99999888...45999999999999988.8999999999999999988.....88999999999999888887777...55666 PP

                 .HHHH CS
       NACHT 108 lLsel 112
                 lL++l
  KOO23682.1 685 LLAGL 689
                 66544 PP

  == domain 2  score: 11.0 bits;  conditional E-value: 0.00049
                 CEEEEC-TTTCHHHHHHHHHHHHCT CS
       NACHT   2 lvilqGeaGsGKTtLlqklalawae 26 
                  v+l G++G+GK+t+l  l+  +a 
  KOO23682.1 907 RVALVGPNGCGKSTFLNLLMGNLAP 931
                 689**************99988875 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.0   0.1   0.00073      0.45      31      93 ..     587     642 ..     576     681 .. 0.80
   2 !    8.4   0.0    0.0023       1.4      31      58 ..     903     930 ..     890     944 .. 0.84
   3 ?   -0.4   0.0       1.2   7.3e+02      98     146 ..    1008    1056 ..     983    1060 .. 0.71

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.00073
      AAA_25  31 pagelallaGapgtGKttlaldlalavatGkpwlgpvapeqgkVlyvsaEdsedelrrRlrav 93 
                 +ag+   l+++ g GKttl+  ++   +tG p       +   Vlyv  E +++  +  ++a+
  KOO23682.1 587 RAGHRYGLVAPNGKGKTTLLKAIGSRALTGLP-------RSLDVLYVEQEVRAAAGESAIEAL 642
                 67777889***********************5.......799******999886655555555 PP

  == domain 2  score: 8.4 bits;  conditional E-value: 0.0023
      AAA_25  31 pagelallaGapgtGKttlaldlalava 58 
                  +++ ++l+G+ g+GK+t++  l+  +a
  KOO23682.1 903 SMDSRVALVGPNGCGKSTFLNLLMGNLA 930
                 567899*************987776665 PP

  == domain 3  score: -0.4 bits;  conditional E-value: 1.2
      AAA_25   98 rddarllvldlagv.eslpLfakdrggtlltadvdaleaaieevegvrlv 146 
                   ++ar+ + +l ++   + L++++  ++l  + +dal+ a++e eg +++
  KOO23682.1 1008 GQKARVVFASLSSMrPHV-LLMDEPTNHLDIESIDALISAVNEFEGGVVL 1056
                  467899999998883333.4444444444457899999999998864333 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.3   0.1     0.052        32      27      42 ..     594     609 ..     581     616 .. 0.82
   2 !   15.1   0.0   2.3e-05     0.014      12      41 ..     895     924 ..     893     937 .. 0.80

  Alignments for each domain:
  == domain 1  score: 4.3 bits;  conditional E-value: 0.052
      AAA_29  27 ltGpsGsGKSTllDAi 42 
                 l+ p+G GK+Tll Ai
  KOO23682.1 594 LVAPNGKGKTTLLKAI 609
                 6779*********997 PP

  == domain 2  score: 15.1 bits;  conditional E-value: 2.3e-05
      AAA_29  12 fdghtieidlkgatlltGpsGsGKSTllDA 41 
                 f+  ++e+++++ + l+Gp+G GKST+l  
  KOO23682.1 895 FSSVDFELSMDSRVALVGPNGCGKSTFLNL 924
                 6777889998889**************954 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.5   0.0       0.8     5e+02     100     122 ..     590     612 ..     559     630 .. 0.78
   2 !   18.3   0.0   2.7e-06    0.0017      97     136 ..     902     942 ..     888     960 .. 0.83

  Alignments for each domain:
  == domain 1  score: 0.5 bits;  conditional E-value: 0.8
                  SEEEEECSTTSSHHHHHHHHCTT CS
  RsgA_GTPase 100 ktsvlvGqSGvGKStLinallpe 122
                  +   lv + G GK+tL++a+ ++
   KOO23682.1 590 HRYGLVAPNGKGKTTLLKAIGSR 612
                  666788899********998765 PP

  == domain 2  score: 18.3 bits;  conditional E-value: 2.7e-06
                  CTT.SEEEEECSTTSSHHHHHHHHCTT-----S-------- CS
  RsgA_GTPase  97 lkd.ktsvlvGqSGvGKStLinallpelelktgevseklgr 136
                  l+  + ++lvG+ G GKSt++n l+++l  + gev +++gr
   KOO23682.1 902 LSMdSRVALVGPNGCGKSTFLNLLMGNLAPSSGEVDQANGR 942
                  44437789**************************9998877 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.6   4.7   0.00098      0.61      24     176 ..     594     829 ..     591     845 .. 0.45
   2 !   13.3   0.0   0.00014     0.089      23      39 ..     909     925 ..     895     944 .. 0.84
   3 ?    0.7   0.5         1   6.4e+02     156     188 ..    1091    1130 ..    1036    1143 .. 0.68

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00098
      AAA_23  24 ItGpNGaGKTTildAikl.aLygetprlsrksgrgfeksdveiesegkvkayveltfenkdgry................................... 86 
                 ++ pNG GKTT+l Ai   aL+g    l+r+ +  +++++v+ +    +++ +e  ++++++r+                                   
  KOO23682.1 594 LVAPNGKGKTTLLKAIGSrALTG----LPRSLDVLYVEQEVRAA---AGESAIEALLRSDSKRSsllaeelrlesqlvavydaleahgseaceararsl 685
                 678*************955****....55555667888888844...4456677777777777777777777777777776666666666666666666 PP

      AAA_23  87 .............................................trsiererelskkkgkttkkaklelleideleqfisellgskkiilnlilflgq 140
                                                              +    + + + ++  +  kk++  ++++d+ + f+++                 
  KOO23682.1 686 laglgfdeakqeaptttlsggwrmrlalaralflqpelllldeptNHLDLDACIWLQEHLSHEKKSTMLIVSHDQ-QHFLNH----------------- 766
                 555555555544443333333333333333333333333333332111112222222222222333333333332.233333................. PP

      AAA_23 141 er.......feefelkdkke...................rleelekeleeledekkllekl...........e 176
                          +         +                    ++el+k+   +++e ++l++             
  KOO23682.1 767 -VctdviliE---------QrklhyfagdyddftkrhdsFVAELRKKAMAEQKELQKLQQAlskggaeagskS 829
                 .022222220.........021222222222222222223444433333333333333333233333333332 PP

  == domain 2  score: 13.3 bits;  conditional E-value: 0.00014
      AAA_23  23 lItGpNGaGKTTildAi 39 
                 +++GpNG+GK+T+l+ +
  KOO23682.1 909 ALVGPNGCGKSTFLNLL 925
                 789***********976 PP

  == domain 3  score: 0.7 bits;  conditional E-value: 1
      AAA_23  156 eelekeleeledekkllekl.......eqekekekeleel 188 
                  +++e ++ ++ + ++l e+        +++k+ke++  ++
  KOO23682.1 1091 DKYESKILKQIEARQLAEEAkararaeQRRKKKEAAARQV 1130
                  5566666666666665555534443322333333333333 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.5   0.0     0.017        11       3      22 ..     594     613 ..     592     677 .. 0.74
   2 !    9.1   0.1    0.0027       1.7       2      23 ..     909     930 ..     908    1059 .. 0.61

  Alignments for each domain:
  == domain 1  score: 6.5 bits;  conditional E-value: 0.017
                 EESSTTSSHHHHHHHHHHHH CS
         AAA   3 lyGppGtGKTllakavakel 22 
                 l+ p G GKT+l ka+ + +
  KOO23682.1 594 LVAPNGKGKTTLLKAIGSRA 613
                 788*************9885 PP

  == domain 2  score: 9.1 bits;  conditional E-value: 0.0027
                 EEESSTTSSHHHHHHHHHHHHT CS
         AAA   2 llyGppGtGKTllakavakelg 23 
                  l+Gp G+GK+++ + ++ +l 
  KOO23682.1 909 ALVGPNGCGKSTFLNLLMGNLA 930
                 69*************9999973 PP

>> AAA_15  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.1   0.1      0.98     6e+02      31      43 ..     597     609 ..     594     611 .. 0.89
   2 !   15.0   0.0   2.5e-05     0.015      16      43 ..     899     925 ..     895     932 .. 0.90

  Alignments for each domain:
  == domain 1  score: -0.1 bits;  conditional E-value: 0.98
      AAA_15  31 kNnsGKSsileal 43 
                 +N+ GK+++l+a+
  KOO23682.1 597 PNGKGKTTLLKAI 609
                 79**********9 PP

  == domain 2  score: 15.0 bits;  conditional E-value: 2.5e-05
      AAA_15  16 dveidlseeltvliGkNnsGKSsileal 43 
                 d+e+++++    l+G+N++GKS++l++l
  KOO23682.1 899 DFELSMDS-RVALVGPNGCGKSTFLNLL 925
                 57888888.99**************998 PP

>> TPR_8  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.4   0.1      0.79   4.9e+02      14      31 ..     272     289 ..     269     290 .. 0.86
   2 !   12.3   0.0   0.00026      0.16       3      34 .]     297     328 ..     295     328 .. 0.90

  Alignments for each domain:
  == domain 1  score: 1.4 bits;  conditional E-value: 0.79
                 TT-HHHHHHHHHHHHHHH CS
       TPR_8  14 lgdyeeAkeyyekaleld 31 
                  g ++eA ++++ al+l+
  KOO23682.1 272 AGALDEAFACCRNALKLE 289
                 5779************95 PP

  == domain 2  score: 12.3 bits;  conditional E-value: 0.00026
                 HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH. CS
       TPR_8   3 ayynlgsiylklgdyeeAkeyyekaleldpdn 34 
                 +++ ++ i+  + + e+A++++ kal++d +n
  KOO23682.1 297 VHLTIAAILTAQDKPEQAEKAFSKALSIDANN 328
                 56778999999******************986 PP

>> TPR_2  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.9   0.7    0.0061       3.8       8      31 ..     266     289 ..     265     292 .. 0.90
   2 !   14.8   0.0   3.6e-05     0.022       3      34 .]     297     328 ..     295     328 .. 0.92

  Alignments for each domain:
  == domain 1  score: 7.9 bits;  conditional E-value: 0.0061
       TPR_2   8 GlayyklgdyeeAleafekAleld 31 
                 ++ +yk+g ++eA ++++ Al+l+
  KOO23682.1 266 AQKLYKAGALDEAFACCRNALKLE 289
                 5679******************96 PP

  == domain 2  score: 14.8 bits;  conditional E-value: 3.6e-05
       TPR_2   3 alynlGlayyklgdyeeAleafekAleldPnn 34 
                 ++  ++ ++ +++++e+A++af kAl++d nn
  KOO23682.1 297 VHLTIAAILTAQDKPEQAEKAFSKALSIDANN 328
                 688999**********************9876 PP

>> TPR_19  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.6   1.7   6.8e-06    0.0042       1      64 [.     269     335 ..     269     339 .. 0.90

  Alignments for each domain:
  == domain 1  score: 17.6 bits;  conditional E-value: 6.8e-06
      TPR_19   1 llaegdyaeAlalleqalqedpk..naearllLAeallalgqldeAealLdalpeedpdd.aryasL 64 
                 l+++g ++eA a  ++al+ + +  n ++ l  A +l a+  +++Ae++ ++++  d+++ a+y++L
  KOO23682.1 269 LYKAGALDEAFACCRNALKLEGGadNVNVHLTIAAILTAQDKPEQAEKAFSKALSIDANNvAAYKGL 335
                 6899*************9887766699999999**************************99999877 PP

>> TPR_14  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.1   0.0     0.082        51      11      39 ..     269     297 ..     262     300 .. 0.81
   2 !   17.7   0.1   7.3e-06    0.0045       2      43 ..     296     337 ..     295     338 .. 0.93

  Alignments for each domain:
  == domain 1  score: 5.1 bits;  conditional E-value: 0.082
      TPR_14  11 llalGdpdeAiallrralalaPddaeawl 39 
                 l+ +G +deA a++r al+l  + + ++ 
  KOO23682.1 269 LYKAGALDEAFACCRNALKLEGGADNVNV 297
                 6789***************9877665555 PP

  == domain 2  score: 17.7 bits;  conditional E-value: 7.3e-06
      TPR_14   2 eallalaeallalGdpdeAiallrralalaPddaeawlllaq 43 
                 +++l +a++l a+++p++A++++ +al+ + ++ +a+  la 
  KOO23682.1 296 NVHLTIAAILTAQDKPEQAEKAFSKALSIDANNVAAYKGLAV 337
                 568899********************************9997 PP

>> TPR_12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   0.2   8.3e-06    0.0051      13      75 ..     269     325 ..     263     327 .. 0.92

  Alignments for each domain:
  == domain 1  score: 17.1 bits;  conditional E-value: 8.3e-06
      TPR_12  13 lrrlgrydeAlellekaleiarrllGpdhpltattlrnLgrlyralgryeeAlelleealaia 75 
                 l+++g +deA+++++ al +     G d+   +++  +++ ++ a++++e+A++++ +al i+
  KOO23682.1 269 LYKAGALDEAFACCRNALKLE---GGADN---VNVHLTIAAILTAQDKPEQAEKAFSKALSID 325
                 678999***************...88887...899*************************985 PP

>> TPR_11  TPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.9   0.2     0.068        42       3      35 ..     268     302 ..     266     309 .. 0.79
   2 !   12.3   0.5   0.00016       0.1       3      39 ..     304     340 ..     302     343 .. 0.88

  Alignments for each domain:
  == domain 1  score: 3.9 bits;  conditional E-value: 0.068
      TPR_11   3 ayyeqGkyeeAieaYkkAlkld..PdnaeayynLG 35 
                  +y+ G ++eA ++ ++Alkl    dn+++++ ++
  KOO23682.1 268 KLYKAGALDEAFACCRNALKLEggADNVNVHLTIA 302
                 689*****************975567777776665 PP

  == domain 2  score: 12.3 bits;  conditional E-value: 0.00016
      TPR_11   3 ayyeqGkyeeAieaYkkAlkldPdnaeayynLGlayy 39 
                 ++++q k e+A +a++kAl +d +n+ ay +L++++ 
  KOO23682.1 304 ILTAQDKPEQAEKAFSKALSIDANNVAAYKGLAVLLE 340
                 5677888899*********************998875 PP

>> RNA_helicase  RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.7   0.0      0.52   3.2e+02       5      24 ..     596     615 ..     593     631 .. 0.80
   2 !   12.2   0.0    0.0003      0.18       2      26 ..     909     933 ..     908     945 .. 0.83

  Alignments for each domain:
  == domain 1  score: 1.7 bits;  conditional E-value: 0.52
  RNA_helicase   5 GpsgeGKStlakeLakallk 24 
                    p+g GK+tl k + ++ l+
    KOO23682.1 596 APNGKGKTTLLKAIGSRALT 615
                   689*********99887765 PP

  == domain 2  score: 12.2 bits;  conditional E-value: 0.0003
  RNA_helicase   2 wlyGpsgeGKStlakeLakallkkl 26 
                    l+Gp+g+GKSt+ + L+ +l+ ++
    KOO23682.1 909 ALVGPNGCGKSTFLNLLMGNLAPSS 933
                   689**************99998555 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.3   0.1     0.074        46      10      51 ..     594     632 ..     592     728 .. 0.64
   2 !    8.6   0.0    0.0035       2.2       8      46 ..     908     937 ..     904    1065 .. 0.60

  Alignments for each domain:
  == domain 1  score: 4.3 bits;  conditional E-value: 0.074
      AAA_22  10 vtGesGtGKTtllrrlleqldeeakaee..erpevvfvtlpsst 51 
                 ++++ G GKTtll+ + +++          ++ +v++v+  +  
  KOO23682.1 594 LVAPNGKGKTTLLKAIGSRALT-----GlpRSLDVLYVEQEVRA 632
                 68999**********9999843.....24434444444433333 PP

  == domain 2  score: 8.6 bits;  conditional E-value: 0.0035
      AAA_22   8 lvvtGesGtGKTtllrrlleqldeeakaeeerpevvfvt 46 
                 ++++G+ G+GK+t l+ l+ +l          p+  +v+
  KOO23682.1 908 VALVGPNGCGKSTFLNLLMGNL---------APSSGEVD 937
                 579*************999887.........34433444 PP

>> TPR_17  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.4   0.0     0.092        57       1      34 []     281     316 ..     281     316 .. 0.87
   2 ?    8.5   0.0    0.0047       2.9       2      29 ..     318     345 ..     317     349 .. 0.88

  Alignments for each domain:
  == domain 1  score: 4.4 bits;  conditional E-value: 0.092
      TPR_17   1 lylkaleld..PnnadaynnLAelllknGdlmtArq 34 
                 ++++al+l+   +n++++   A +l  + ++++A++
  KOO23682.1 281 CCRNALKLEggADNVNVHLTIAAILTAQDKPEQAEK 316
                 5677777777789*********************85 PP

  == domain 2  score: 8.5 bits;  conditional E-value: 0.0047
      TPR_17   2 ylkaleldPnnadaynnLAelllknGdl 29 
                 + kal +d nn+ ay  LA+ll+  G+ 
  KOO23682.1 318 FSKALSIDANNVAAYKGLAVLLEAFGEE 345
                 679*******************998875 PP

>> AAA_24  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.4   0.0     0.045        28       4      28 ..     591     614 ..     588     644 .. 0.77
   2 ?    7.9   0.0    0.0038       2.4       3      22 ..     906     925 ..     904     948 .. 0.85

  Alignments for each domain:
  == domain 1  score: 4.4 bits;  conditional E-value: 0.045
      AAA_24   4 kiliyGpsgiGKTtlakelgpkplf 28 
                 ++ +++p+g GKTtl+k +g + ++
  KOO23682.1 591 RYGLVAPNGKGKTTLLKAIGSR-AL 614
                 67899************99444.44 PP

  == domain 2  score: 7.9 bits;  conditional E-value: 0.0038
      AAA_24   3 lkiliyGpsgiGKTtlakel 22 
                  +++++Gp+g GK+t+++ l
  KOO23682.1 906 SRVALVGPNGCGKSTFLNLL 925
                 589*************9877 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.1         7   4.4e+03      10      19 ..     600     609 ..     593     616 .. 0.80
   2 ?   13.6   0.1   8.4e-05     0.052       1      25 [.     907     931 ..     907     942 .. 0.83

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 7
                 SSHHHHHHHH CS
    MMR_HSR1  10 vGKStLinal 19 
                  GK+tL++a+
  KOO23682.1 600 KGKTTLLKAI 609
                 5******998 PP

  == domain 2  score: 13.6 bits;  conditional E-value: 8.4e-05
                 EEEEEESTTSSHHHHHHHHHTSTEE CS
    MMR_HSR1   1 evaivGrpNvGKStLinaltgekai 25 
                 +va+vG    GKSt++n l+g+ a 
  KOO23682.1 907 RVALVGPNGCGKSTFLNLLMGNLAP 931
                 69******************98553 PP

>> AAA_7  P-loop containing dynein motor region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.5   0.0      0.59   3.7e+02      26      53 ..     582     609 ..     572     632 .. 0.83
   2 ?    8.6   0.0     0.002       1.2      30      59 ..     902     931 ..     893     940 .. 0.85

  Alignments for each domain:
  == domain 1  score: 0.5 bits;  conditional E-value: 0.59
       AAA_7  26 lelllknkkpvllvGptGtGKtviikdl 53 
                  +l l++++   lv p G GKt+++k +
  KOO23682.1 582 AKLSLRAGHRYGLVAPNGKGKTTLLKAI 609
                 567788999999***********99874 PP

  == domain 2  score: 8.6 bits;  conditional E-value: 0.002
       AAA_7  30 lknkkpvllvGptGtGKtviikdllkkldk 59 
                 l+ +  v lvGp G+GK++ ++ l+ +l +
  KOO23682.1 902 LSMDSRVALVGPNGCGKSTFLNLLMGNLAP 931
                 5677899**************999998875 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.2       4.8     3e+03      80     107 ..     406     447 ..     362     508 .. 0.54
   2 ?    6.5   0.6     0.016       9.6      29     107 ..     594     693 ..     569     745 .. 0.61
   3 ?   10.8   0.0   0.00079      0.49      25      62 ..     906     938 ..     886    1017 .. 0.79
   4 ?    0.1   0.3       1.5   9.3e+02      60     108 ..    1090    1130 ..    1076    1143 .. 0.54

  Alignments for each domain:
  == domain 1  score: -1.6 bits;  conditional E-value: 4.8
      AAA_16  80 ellrqlldeaesaeleawrekleeala...............a 107
                 +  +q+++++++ e  a+++k ++a++               +
  KOO23682.1 406 RAAKQEAAAKAT-EEKAAATKAKAAARkttkgasgvetaataD 447
                 222222222111.222222222222224444444454444440 PP

  == domain 2  score: 6.5 bits;  conditional E-value: 0.016
      AAA_16  29 lsGesGvGKsslvrellralekdggiflrgkcdqlesaipysa.laqalareellrqlldeaesaeleawrekleeala.................... 106
                 l+ + G GK++l++++  ++ +     l    d l     y+   ++a+a e+ +++ll+ +++   +  +e+l+ + +                    
  KOO23682.1 594 LVAPNGKGKTTLLKAIGSRALTG----LPRSLDVL-----YVEqEVRAAAGESAIEALLRSDSK-RSSLLAEELRLESQlvavydaleahgseaceara 682
                 67899***********9988888....88888888.....744466777788999999888333.3333333233222234555455544444444444 PP

      AAA_16 107 ..........a 107
                           +
  KOO23682.1 683 rsllaglgfdE 693
                 44444444441 PP

  == domain 3  score: 10.8 bits;  conditional E-value: 0.00079
      AAA_16  25 elvllsGesGvGKsslvrellralekdggiflrgkcdq 62 
                 + v l+G+ G+GKs+ ++ l+  l  + g     + dq
  KOO23682.1 906 SRVALVGPNGCGKSTFLNLLMGNLAPSSG-----EVDQ 938
                 4689****************998888833.....3333 PP

  == domain 4  score: 0.1 bits;  conditional E-value: 1.5
      AAA_16   60 cdqlesaipysalaqalareellrqlldeaesaeleawrekleeala.av 108 
                  +d++es+     +++++++++l ++ +++    ++++ r+k +ea+a +v
  KOO23682.1 1090 FDKYESK-----ILKQIEARQLAEEAKAR----ARAEQRRKKKEAAArQV 1130
                  4444333.....77777665555555555....33344443333333233 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.0       4.3   2.7e+03       7      19 ..     597     609 ..     595     648 .. 0.85
   2 ?   10.1   0.0    0.0011      0.67       2      24 ..     908     930 ..     908     952 .. 0.84

  Alignments for each domain:
  == domain 1  score: -1.6 bits;  conditional E-value: 4.3
      AAA_33   7 lpGsGKstlaerl 19 
                 ++G GK+tl++ +
  KOO23682.1 597 PNGKGKTTLLKAI 609
                 5799****99865 PP

  == domain 2  score: 10.1 bits;  conditional E-value: 0.0011
      AAA_33   2 vllvGlpGsGKstlaerllkklg 24 
                 v lvG++G+GKst++  l+ +l+
  KOO23682.1 908 VALVGPNGCGKSTFLNLLMGNLA 930
                 569************99998876 PP

>> Dynamin_N  Dynamin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.1   0.00049       0.3       1      22 [.     908     929 ..     908     936 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00049
                 EEEEEBTTTTHHHHHHHHHTS- CS
   Dynamin_N   1 iavvGsqSsGKSSvlnaLlged 22 
                 +a+vG    GKS++ln L+g  
  KOO23682.1 908 VALVGPNGCGKSTFLNLLMGNL 929
                 799****************975 PP

>> PIN_3  PIN domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   1.2       5.2   3.2e+03      46      72 ..     401     427 ..     379     455 .. 0.51
   2 ?    8.6   0.0    0.0049       3.1       4      72 ..     735     804 ..     734     867 .. 0.73
   3 ?    0.2   0.2         2   1.2e+03      31      72 ..    1080    1121 ..    1055    1142 .. 0.64

  Alignments for each domain:
  == domain 1  score: -1.1 bits;  conditional E-value: 5.2
       PIN_3  46 rvlarelaypqfklraadkaallakva 72 
                 +++ar+ a+++++++a + +a+ +k  
  KOO23682.1 401 EAAARRAAKQEAAAKATEEKAAATKAK 427
                 333444444444444444433333332 PP

  == domain 2  score: 8.6 bits;  conditional E-value: 0.0049
       PIN_3   4 lDtnvlldallfdsp.aarkildaletgaitlvvsprlldElervlarelaypqfklraadkaallakva 72 
                 lD++++l++ l++++ +   i++  +++ +  v++  +l+E ++  +  ++y++f++r +   a l k a
  KOO23682.1 735 LDACIWLQEHLSHEKkSTMLIVSHDQQHFLNHVCTDVILIEQRKLHYFAGDYDDFTKRHDSFVAELRKKA 804
                 8**********99998888999999******************998777777776666555544444444 PP

  == domain 3  score: 0.2 bits;  conditional E-value: 2
       PIN_3   31 aitlvvsprlldElervlarelaypqfklraadkaallakva 72  
                   i+++ s+ ++d +e  + ++   +q +++a+ +a ++++  
  KOO23682.1 1080 GIRPLGSEFTFDKYESKILKQIEARQLAEEAKARARAEQRRK 1121
                  567777777777777777666666666666666666665543 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1144 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1767  (0.0985554); expected 358.6 (0.02)
Passed bias filter:                      668  (0.0372581); expected 358.6 (0.02)
Passed Vit filter:                       112  (0.00624686); expected 17.9 (0.001)
Passed Fwd filter:                        44  (0.00245412); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              29  [number of targets reported over threshold]
# CPU time: 1.04u 0.33s 00:00:01.37 Elapsed: 00:00:00.46
# Mc/sec: 7437.02
//
Query:       KOO23683.1  [L=129]
Description: hypothetical protein Ctob_004078 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (129 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       474  (0.0264376); expected 358.6 (0.02)
Passed bias filter:                      402  (0.0224218); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.26s 00:00:00.64 Elapsed: 00:00:00.41
# Mc/sec: 936.01
//
Query:       KOO23684.1  [L=337]
Description: ef-hand calcium-binding domain-containing protein 6-like protein, partial [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    6.3e-35  116.1  13.5    1.1e-05   24.7   0.5    6.3  6  EF-hand_1      EF hand
    1.8e-29   99.1   8.4    0.00026   20.7   0.0    6.7  6  EF-hand_6      EF-hand domain
    7.3e-29  100.0   7.1    1.2e-09   38.5   0.2    3.3  3  EF-hand_7      EF-hand domain pair
    7.3e-23   79.0   1.8    0.00021   20.6   0.0    6.4  6  EF-hand_5      EF hand
    3.5e-22   78.0   4.4    1.1e-07   31.5   0.1    4.5  4  EF-hand_8      EF-hand domain pair
    1.3e-12   48.1   0.8      0.015   15.6   0.0    3.2  3  SPARC_Ca_bdg   Secreted protein acidic and rich in cysteine C
    4.7e-11   43.5   0.6      0.015   16.2   0.1    3.3  3  EF-hand_11     EF-hand domain
    2.1e-06   27.5   1.9       0.47   10.3   0.0    3.4  3  EF-hand_10     EF hand
     0.0012   18.9   0.0         19    5.6   0.0    4.4  4  PMBR           Pseudomurein-binding repeat
     0.0057   16.7   1.3        2.4    8.1   0.2    3.4  3  PP1_inhibitor  PKC-activated protein phosphatase-1 inhibitor
     0.0078   16.2   0.3        3.7    7.7   0.1    3.6  3  Sigma70_r1_1   Sigma-70 factor, region 1.1
     0.0094   15.9   7.2       0.75    9.8   0.2    4.3  5  EF-hand_4      Cytoskeletal-regulatory complex EF hand
  ------ inclusion threshold ------
      0.018   15.1   0.1        7.6    6.7   0.0    2.4  2  DUF4110        Domain of unknown function (DUF4110)
      0.028   14.5   0.1       0.83    9.8   0.0    2.2  2  DUF4760        Domain of unknown function (DUF4760)
       0.05   13.7   0.0         22    5.1   0.0    3.3  3  DUF1398        Protein of unknown function (DUF1398)
       0.07   13.4   4.2         12    6.1   0.1    3.3  3  SseB           SseB protein N-terminal domain
      0.076   11.6   0.0        3.7    6.0   0.0    2.4  2  DUF5580        Family of unknown function (DUF5580)
        1.7    9.0   6.0         23    5.3   0.2    3.1  3  Tox-REase-3    Restriction endonuclease fold toxin 3


Domain annotation for each model (and alignments):
>> EF-hand_1  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.7   0.0   9.6e-08   9.6e-05       3      26 ..       2      25 ..       1      27 [. 0.93
   2 !   24.7   0.5   1.1e-08   1.1e-05       2      27 ..      37      62 ..      36      64 .. 0.93
   3 !   16.4   0.0   4.6e-06    0.0046       1      26 [.     134     159 ..     134     162 .. 0.91
   4 !   20.9   0.1   1.7e-07   0.00017       2      28 ..     171     197 ..     170     198 .. 0.93
   5 !   17.3   0.0   2.4e-06    0.0024       1      26 [.     269     294 ..     269     297 .. 0.92
   6 !   20.3   0.1   2.7e-07   0.00027       2      28 ..     306     332 ..     305     333 .. 0.92

  Alignments for each domain:
  == domain 1  score: 21.7 bits;  conditional E-value: 9.6e-08
                HHHHHHHTTTSSSEEEHHHHHHHH CS
   EF-hand_1  3 keiFrefDkDgdGkIdfeEfkell 26
                 ++F  +D D++Gk+++eE++++l
  KOO23684.1  2 MKAFHYVDLDNSGKLNREELRRAL 25
                589******************997 PP

  == domain 2  score: 24.7 bits;  conditional E-value: 1.1e-08
                HHHHHHHHTTTSSSEEEHHHHHHHHH CS
   EF-hand_1  2 lkeiFrefDkDgdGkIdfeEfkellk 27
                ++e+++  D DgdG +d++Ef+++l+
  KOO23684.1 37 IDELMAACDADGDGEVDYKEFVDVLA 62
                89*********************997 PP

  == domain 3  score: 16.4 bits;  conditional E-value: 4.6e-06
                 HHHHHHHHHTTTSSSEEEHHHHHHHH CS
   EF-hand_1   1 elkeiFrefDkDgdGkIdfeEfkell 26 
                 +++++F  +D+D++G ++  E+ ++l
  KOO23684.1 134 DVRKAFHFVDVDNSGGVSEAELYRAL 159
                 589*******************9887 PP

  == domain 4  score: 20.9 bits;  conditional E-value: 1.7e-07
                 HHHHHHHHTTTSSSEEEHHHHHHHHHH CS
   EF-hand_1   2 lkeiFrefDkDgdGkIdfeEfkellkk 28 
                 +k++++  D+D +G I+++Ef+++l++
  KOO23684.1 171 VKKLIAQCDQDANGEINYDEFVDALAR 197
                 6899*******************9975 PP

  == domain 5  score: 17.3 bits;  conditional E-value: 2.4e-06
                 HHHHHHHHHTTTSSSEEEHHHHHHHH CS
   EF-hand_1   1 elkeiFrefDkDgdGkIdfeEfkell 26 
                 +++++F  +D+D++G +++ E+ ++l
  KOO23684.1 269 DIRKAFHFVDVDNSGAVSRTELYRAL 294
                 689*******************9887 PP

  == domain 6  score: 20.3 bits;  conditional E-value: 2.7e-07
                 HHHHHHHHTTTSSSEEEHHHHHHHHHH CS
   EF-hand_1   2 lkeiFrefDkDgdGkIdfeEfkellkk 28 
                 ++++++  D+D +G I+++Ef+++l++
  KOO23684.1 306 VDRLIAQCDQDANGEINYDEFVDALAR 332
                 688999*****************9975 PP

>> EF-hand_6  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.7   0.0   2.6e-07   0.00026       2      27 ..       1      26 [.       1      29 [. 0.93
   2 !   17.1   0.0   3.5e-06    0.0035       2      27 ..      37      62 ..      36      72 .. 0.86
   3 !   15.1   0.1   1.6e-05     0.016       2      27 ..     135     160 ..     134     163 .. 0.92
   4 !   14.1   0.0   3.2e-05     0.032       7      27 ..     176     196 ..     170     206 .. 0.86
   5 !   17.7   0.1   2.3e-06    0.0023       1      27 [.     269     295 ..     269     298 .. 0.93
   6 !   13.4   0.1   5.8e-05     0.058       8      27 ..     312     331 ..     306     334 .. 0.90

  Alignments for each domain:
  == domain 1  score: 20.7 bits;  conditional E-value: 2.6e-07
   EF-hand_6  2 lreaFklfDkdgdGkidaeElrkalr 27
                +++aF++ D d++Gk+++eElr+al 
  KOO23684.1  1 MMKAFHYVDLDNSGKLNREELRRALD 26
                679*********************96 PP

  == domain 2  score: 17.1 bits;  conditional E-value: 3.5e-06
   EF-hand_6  2 lreaFklfDkdgdGkidaeElrkalr 27
                ++e+  + D dgdG++d++E++++l 
  KOO23684.1 37 IDELMAACDADGDGEVDYKEFVDVLA 62
                56777899***************996 PP

  == domain 3  score: 15.1 bits;  conditional E-value: 1.6e-05
   EF-hand_6   2 lreaFklfDkdgdGkidaeElrkalr 27 
                 +r+aF+  D+d++G ++ +El +al 
  KOO23684.1 135 VRKAFHFVDVDNSGGVSEAELYRALD 160
                 799*******************9996 PP

  == domain 4  score: 14.1 bits;  conditional E-value: 3.2e-05
   EF-hand_6   7 klfDkdgdGkidaeElrkalr 27 
                  + D+d +G+i+++E+++al 
  KOO23684.1 176 AQCDQDANGEINYDEFVDALA 196
                 678****************97 PP

  == domain 5  score: 17.7 bits;  conditional E-value: 2.3e-06
   EF-hand_6   1 elreaFklfDkdgdGkidaeElrkalr 27 
                 ++r+aF+  D+d++G +++ El +al 
  KOO23684.1 269 DIRKAFHFVDVDNSGAVSRTELYRALD 295
                 589*********************996 PP

  == domain 6  score: 13.4 bits;  conditional E-value: 5.8e-05
   EF-hand_6   8 lfDkdgdGkidaeElrkalr 27 
                 + D+d +G+i+++E+++al 
  KOO23684.1 312 QCDQDANGEINYDEFVDALA 331
                 78****************96 PP

>> EF-hand_7  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.5   0.2   1.2e-12   1.2e-09       5      68 ..       2      59 ..       1      62 [. 0.95
   2 !   32.5   0.2   8.6e-11   8.6e-08       2      69 ..     133     194 ..     132     196 .. 0.91
   3 !   32.1   0.2   1.1e-10   1.1e-07       1      69 [.     267     329 ..     267     331 .. 0.90

  Alignments for each domain:
  == domain 1  score: 38.5 bits;  conditional E-value: 1.2e-12
   EF-hand_7  5 keaFkelDtdgdgyldkeellrllrkifqgagegsklsdeelellfkefDtdkdGvisfdEFlk 68
                + aF   D d++g+l++eel+r+l         + +++d ++++l+   D d+dG++++ EF+ 
  KOO23684.1  2 MKAFHYVDLDNSGKLNREELRRALD------LWNIPITDAKIDELMAACDADGDGEVDYKEFVD 59
                679*********************9......*******************************86 PP

  == domain 2  score: 32.5 bits;  conditional E-value: 8.6e-11
   EF-hand_7   2 eklkeaFkelDtdgdgyldkeellrllrkifqgagegsklsdeelellfkefDtdkdGvisfdEFlkl 69 
                 ++++ aF   D+d++g ++++el r+l         + ++++e++++l+   D+d +G+i++dEF+ +
  KOO23684.1 133 TDVRKAFHFVDVDNSGGVSEAELYRALD------LFNIPIDRESVKKLIAQCDQDANGEINYDEFVDA 194
                 678999****************777777......99*****************************976 PP

  == domain 3  score: 32.1 bits;  conditional E-value: 1.1e-10
   EF-hand_7   1 eeklkeaFkelDtdgdgyldkeellrllrkifqgagegsklsdeelellfkefDtdkdGvisfdEFlkl 69 
                 +++++ aF   D+d++g ++++el r+l         + ++s e++++l+   D+d +G+i++dEF+ +
  KOO23684.1 267 FTDIRKAFHFVDVDNSGAVSRTELYRALD------LFNIPVSFEAVDRLIAQCDQDANGEINYDEFVDA 329
                 6789*******************666777......8889999999****9999*************976 PP

>> EF-hand_5  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.6   0.0   2.1e-07   0.00021       2      23 ..       3      23 ..       1      25 [. 0.88
   2 !   12.2   0.2   9.7e-05     0.096       5      23 ..      41      59 ..      37      61 .. 0.79
   3 !   13.9   0.0   2.9e-05     0.029       2      23 ..     136     157 ..     135     159 .. 0.90
   4 ?    3.2   0.0     0.067        67       5      21 ..     175     191 ..     171     196 .. 0.82
   5 !   19.2   0.0     6e-07    0.0006       1      23 [.     270     292 ..     270     294 .. 0.91
   6 ?    2.6   0.1       0.1     1e+02       7      21 ..     312     326 ..     303     330 .. 0.85

  Alignments for each domain:
  == domain 1  score: 20.6 bits;  conditional E-value: 2.1e-07
                HHHHHHH-SS-SSCE-HHHHHH CS
   EF-hand_5  2 kdtFqaiDlNgDGkIskeELkt 23
                k +F  +Dl+++Gk+++eEL++
  KOO23684.1  3 K-AFHYVDLDNSGKLNREELRR 23
                4.4*****************98 PP

  == domain 2  score: 12.2 bits;  conditional E-value: 9.7e-05
                HHHH-SS-SSCE-HHHHHH CS
   EF-hand_5  5 FqaiDlNgDGkIskeELkt 23
                  a D++gDG ++  E+  
  KOO23684.1 41 MAACDADGDGEVDYKEFVD 59
                5666************965 PP

  == domain 3  score: 13.9 bits;  conditional E-value: 2.9e-05
                 HHHHHHH-SS-SSCE-HHHHHH CS
   EF-hand_5   2 kdtFqaiDlNgDGkIskeELkt 23 
                 +++F  +D++++G +s  EL++
  KOO23684.1 136 RKAFHFVDVDNSGGVSEAELYR 157
                 678*****************98 PP

  == domain 4  score: 3.2 bits;  conditional E-value: 0.067
                 HHHH-SS-SSCE-HHHH CS
   EF-hand_5   5 FqaiDlNgDGkIskeEL 21 
                   + D +  G I+ +E+
  KOO23684.1 175 IAQCDQDANGEINYDEF 191
                 566799**********9 PP

  == domain 5  score: 19.2 bits;  conditional E-value: 6e-07
                 HHHHHHHH-SS-SSCE-HHHHHH CS
   EF-hand_5   1 lkdtFqaiDlNgDGkIskeELkt 23 
                 ++++F  +D++++G +s+ EL++
  KOO23684.1 270 IRKAFHFVDVDNSGAVSRTELYR 292
                 6789*****************98 PP

  == domain 6  score: 2.6 bits;  conditional E-value: 0.1
                 HH-SS-SSCE-HHHH CS
   EF-hand_5   7 aiDlNgDGkIskeEL 21 
                 + D +  G I+ +E+
  KOO23684.1 312 QCDQDANGEINYDEF 326
                 559999********9 PP

>> EF-hand_8  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.2   0.0    0.0021       2.1      32      49 ..       5      22 ..       4      26 .. 0.85
   2 !   31.5   0.1   1.1e-10   1.1e-07       2      54 ..      13      63 ..      12      64 .. 0.95
   3 !   18.9   0.0     1e-06     0.001       2      54 ..     147     197 ..     135     198 .. 0.96
   4 !   25.8   0.1   7.1e-09   7.1e-06       2      54 ..     282     332 ..     274     333 .. 0.96

  Alignments for each domain:
  == domain 1  score: 8.2 bits;  conditional E-value: 0.0021
   EF-hand_8 32 frefDtdgdGkisfeEFc 49
                f ++D+d++Gk++ eE  
  KOO23684.1  5 FHYVDLDNSGKLNREELR 22
                6689***********975 PP

  == domain 2  score: 31.5 bits;  conditional E-value: 1.1e-10
   EF-hand_8  2 kgkItreelrrilrilglkkglseeevdilfrefDtdgdGkisfeEFcvller 54
                +gk+ reelrr+l +  ++  +++ ++d+l+ + D dgdG ++++EF+++l+r
  KOO23684.1 13 SGKLNREELRRALDLWNIP--ITDAKIDELMAACDADGDGEVDYKEFVDVLAR 63
                68999********999999..***************************99876 PP

  == domain 3  score: 18.9 bits;  conditional E-value: 1e-06
   EF-hand_8   2 kgkItreelrrilrilglkkglseeevdilfrefDtdgdGkisfeEFcvller 54 
                 +g ++ +el+r+l ++ ++  +  e v  l+   D+d +G i+++EF++ l+r
  KOO23684.1 147 SGGVSEAELYRALDLFNIP--IDRESVKKLIAQCDQDANGEINYDEFVDALAR 197
                 6899***************..***************************99876 PP

  == domain 4  score: 25.8 bits;  conditional E-value: 7.1e-09
   EF-hand_8   2 kgkItreelrrilrilglkkglseeevdilfrefDtdgdGkisfeEFcvller 54 
                 +g ++r+el+r+l ++ ++  +s e+vd l+   D+d +G i+++EF++ l+r
  KOO23684.1 282 SGAVSRTELYRALDLFNIP--VSFEAVDRLIAQCDQDANGEINYDEFVDALAR 332
                 5889***************..***************************99876 PP

>> SPARC_Ca_bdg  Secreted protein acidic and rich in cysteine Ca binding region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.5   0.1   3.4e-05     0.034      60     111 ..       5      58 ..       2      60 .. 0.83
   2 !   15.6   0.0   1.5e-05     0.015      35     111 ..     114     192 ..      78     194 .. 0.81
   3 !   15.2   0.0     2e-05      0.02      38     111 ..     252     327 ..     222     329 .. 0.78

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 3.4e-05
  SPARC_Ca_bdg  60 FsklDtnsdkvlsksELap.lra.plvklehCikpflescDadkdkkislkEwc 111
                   F+ +D ++ + l+++EL+  l + ++  ++  i++++ +cDad d++++ kE++
    KOO23684.1   5 FHYVDLDNSGKLNREELRRaLDLwNIPITDAKIDELMAACDADGDGEVDYKEFV 58 
                   8999*************862444234556889********************97 PP

  == domain 2  score: 15.6 bits;  conditional E-value: 1.5e-05
  SPARC_Ca_bdg  35 ehleelekkeeeknlkeckepvawkFsklDtnsdkvlsksELa.plraplvkle.hCikpflescDadkdkkislkEwc 111
                   +  +++ +k+ ++  ++  + v+  F+ +D+++ + +s++EL  +l +  ++++ + +k+++ +cD+d +++i+  E++
    KOO23684.1 114 NIDAKQLQKQATDAIAAKFTDVRKAFHFVDVDNSGGVSEAELYrALDLFNIPIDrESVKKLIAQCDQDANGEINYDEFV 192
                   455677778888888888889999******************7256666677762589*******************97 PP

  == domain 3  score: 15.2 bits;  conditional E-value: 2e-05
  SPARC_Ca_bdg  38 eelekkeeeknlkeckepvawkFsklDtnsdkvlsksELap.lraplvkle.hCikpflescDadkdkkislkEwc 111
                   +++ +k+ ++  ++  + ++  F+ +D+++ + +s++EL   l +  +++  + +++++ +cD+d +++i+  E++
    KOO23684.1 252 AKQLQKQATDAIAAKFTDIRKAFHFVDVDNSGAVSRTELYRaLDLFNIPVSfEAVDRLIAQCDQDANGEINYDEFV 327
                   5566777777777778889999*****************75244333333225799******************97 PP

>> EF-hand_11  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.4   0.0   0.00023      0.23      25      96 ..       4      75 ..       1      83 [. 0.84
   2 !   11.7   0.0   0.00036      0.36      11      96 ..     124     207 ..     115     217 .. 0.82
   3 !   16.2   0.1   1.5e-05     0.015      11      87 ..     259     335 ..     251     337 .] 0.86

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 0.00023
                HHHHH-TT-SSEE-HHHHHHHHHHHT----HHHHHHHHHTS-B-TTS-EEHHHHHHHHCS-.--------S- CS
  EF-hand_11 25 efenfdtlksntvsreefraictrrvqiltdeqfdrlwselpvnakgrlkyqdflsklsiervaatpmaagd 96
                 f   d  +s  + ree+r   +     +td ++d l +    +  g + y++f+  l+ + va + m   d
  KOO23684.1  4 AFHYVDLDNSGKLNREELRRALDLWNIPITDAKIDELMAACDADGDGEVDYKEFVDVLARDTVAPAAMGKRD 75
                56777777888999***998877776678********************************88888887766 PP

  == domain 2  score: 11.7 bits;  conditional E-value: 0.00036
                 HHHHHHHSHHHHHHHHHHH-TT-SSEE-HHH.HHHHHHHHT----HHHHHHHHHTS-B-TTS-EEHHHHHHHHCS-.--------S- CS
  EF-hand_11  11 lqkavashyhaivqefenfdtlksntvsree.fraictrrvqiltdeqfdrlwselpvnakgrlkyqdflsklsiervaatpmaagd 96 
                    a+a+++  + + f   d  +s  vs  e +ra+   ++ i   e   +l ++   +a+g ++y++f+  l+ + va +  a g 
  KOO23684.1 124 ATDAIAAKFTDVRKAFHFVDVDNSGGVSEAElYRALDLFNIPI-DRESVKKLIAQCDQDANGEINYDEFVDALARDTVAPA--AMGK 207
                 56799999999*****************987468888888876.56899*************************9966554..4444 PP

  == domain 3  score: 16.2 bits;  conditional E-value: 1.5e-05
                 HHHHHHHSHHHHHHHHHHH-TT-SSEE-HHH.HHHHHHHHT----HHHHHHHHHTS-B-TTS-EEHHHHHHHHCS-.- CS
  EF-hand_11  11 lqkavashyhaivqefenfdtlksntvsree.fraictrrvqiltdeqfdrlwselpvnakgrlkyqdflsklsierv 87 
                    a+a+++  i + f   d  +s +vsr e +ra+   ++ + + e  drl ++   +a+g ++y++f+  l+ + v
  KOO23684.1 259 ATDAIAAKFTDIRKAFHFVDVDNSGAVSRTElYRALDLFNIPV-SFEAVDRLIAQCDQDANGEINYDEFVDALARDTV 335
                 56799************************98468887777765.6799**********************99988755 PP

>> EF-hand_10  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.3   0.0   0.00048      0.47       1      44 [.      15      58 ..      15      62 .. 0.95
   2 !    8.8   0.1    0.0014       1.4       5      44 ..     153     192 ..     150     195 .. 0.90
   3 ?    5.8   0.0     0.012        12       4      44 ..     287     327 ..     285     330 .. 0.89

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.00048
  EF-hand_10  1 kmsfkEvkrlLreiNievddeYAekLFkkcDkSksgrLegeEie 44
                k++ +E++r L + Ni + d    +L   cD   +g  + +E++
  KOO23684.1 15 KLNREELRRALDLWNIPITDAKIDELMAACDADGDGEVDYKEFV 58
                8899***********************************99986 PP

  == domain 2  score: 8.8 bits;  conditional E-value: 0.0014
  EF-hand_10   5 kEvkrlLreiNievddeYAekLFkkcDkSksgrLegeEie 44 
                  E+ r L + Ni +d e  +kL  +cD+ ++g ++  E++
  KOO23684.1 153 AELYRALDLFNIPIDRESVKKLIAQCDQDANGEINYDEFV 192
                 68899999************************99998875 PP

  == domain 3  score: 5.8 bits;  conditional E-value: 0.012
  EF-hand_10   4 fkEvkrlLreiNievddeYAekLFkkcDkSksgrLegeEie 44 
                   E+ r L + Ni v+ e    L  +cD+ ++g ++  E++
  KOO23684.1 287 RTELYRALDLFNIPVSFEAVDRLIAQCDQDANGEINYDEFV 327
                 5789999999***********************99998875 PP

>> PMBR  Pseudomurein-binding repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.0   0.0      0.56   5.5e+02       2      13 ..      13      24 ..      12      25 .. 0.88
   2 ?    0.0   0.0       1.1   1.1e+03       2      16 ..      49      63 ..      48      63 .. 0.86
   3 ?    5.6   0.0     0.019        19       2      16 ..     183     197 ..     182     197 .. 0.91
   4 ?    5.6   0.0     0.019        19       2      16 ..     318     332 ..     317     332 .. 0.91

  Alignments for each domain:
  == domain 1  score: 1.0 bits;  conditional E-value: 0.56
        PMBR  2 sgkisyeeyldm 13
                sgk+ +ee++++
  KOO23684.1 13 SGKLNREELRRA 24
                89*******987 PP

  == domain 2  score: 0.0 bits;  conditional E-value: 1.1
        PMBR  2 sgkisyeeyldmasr 16
                +g + y e++d+++r
  KOO23684.1 49 DGEVDYKEFVDVLAR 63
                67889*******998 PP

  == domain 3  score: 5.6 bits;  conditional E-value: 0.019
        PMBR   2 sgkisyeeyldmasr 16 
                 +g i y+e++d+++r
  KOO23684.1 183 NGEINYDEFVDALAR 197
                 799*********998 PP

  == domain 4  score: 5.6 bits;  conditional E-value: 0.019
        PMBR   2 sgkisyeeyldmasr 16 
                 +g i y+e++d+++r
  KOO23684.1 318 NGEINYDEFVDALAR 332
                 799*********998 PP

>> PP1_inhibitor  PKC-activated protein phosphatase-1 inhibitor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.1   0.2    0.0024       2.4      37      80 ..      15      60 ..      12      67 .. 0.87
   2 ?    1.8   0.0      0.22   2.2e+02      42      79 ..     154     193 ..     147     201 .. 0.78
   3 ?    3.1   0.0     0.087        87      39      79 ..     286     328 ..     251     334 .. 0.83

  Alignments for each domain:
  == domain 1  score: 8.1 bits;  conditional E-value: 0.0024
                   SS-SSSSCHHHHHHHH..HHHHHHHCSSSSSTTS-SSSHHHHHHCT CS
  PP1_inhibitor 37 kydrkelqkrldvekW..idesleelylGreeemPeevnidelldl 80
                   k +r el++ ld+ +    d +++el +  +++   ev+  e++d+
     KOO23684.1 15 KLNREELRRALDLWNIpiTDAKIDELMAACDADGDGEVDYKEFVDV 60
                   88**********97633369********************999986 PP

  == domain 2  score: 1.8 bits;  conditional E-value: 0.22
                    SSCHHHHHHH.HHH.HHHHHCSSSSSTTS-SSSHHHHHHC CS
  PP1_inhibitor  42 elqkrldvek.Wid.esleelylGreeemPeevnidelld 79 
                    el + ld+ +  id es+++l +  +++   e+n de++d
     KOO23684.1 154 ELYRALDLFNiPIDrESVKKLIAQCDQDANGEINYDEFVD 193
                    7778888744157746799999999999999999999987 PP

  == domain 3  score: 3.1 bits;  conditional E-value: 0.087
                    -SSSSCHHHHHHHH.HH.HHHHHCSSSSSTTS-SSSHHHHHHC CS
  PP1_inhibitor  39 drkelqkrldvekW.id.esleelylGreeemPeevnidelld 79 
                     r el + ld+ +  +  e++++l +  +++   e+n de++d
     KOO23684.1 286 SRTELYRALDLFNIpVSfEAVDRLIAQCDQDANGEINYDEFVD 328
                    588999999986642323889*******************998 PP

>> Sigma70_r1_1  Sigma-70 factor, region 1.1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.1   0.0       0.2     2e+02      17      39 ..      49      71 ..      31      88 .. 0.74
   2 !    7.7   0.1    0.0037       3.7       4      40 ..     168     206 ..     166     240 .. 0.80
   3 ?    2.0   0.0      0.22   2.1e+02       6      34 ..     305     335 ..     302     337 .] 0.73

  Alignments for each domain:
  == domain 1  score: 2.1 bits;  conditional E-value: 0.2
                  HSCEEHHHHHHHGCCSS--HHHH CS
  Sigma70_r1_1 17 kGyLtyeEindaLpddeldseqi 39
                   G + y+E  d+L  d + + ++
    KOO23684.1 49 DGEVDYKEFVDVLARDTVAPAAM 71
                  467**********9999988777 PP

  == domain 2  score: 7.7 bits;  conditional E-value: 0.0037
                   HHHHHHHHHH..HHHHSCEEHHHHHHHGCCSS--HHHHH CS
  Sigma70_r1_1   4 kaavkeLikk..gKkkGyLtyeEindaLpddeldseqie 40 
                   +++vk+Li++    + G + y+E  daL  d + + ++ 
    KOO23684.1 168 RESVKKLIAQcdQDANGEINYDEFVDALARDTVAPAAMG 206
                   68999***9833457899*************99998875 PP

  == domain 3  score: 2.0 bits;  conditional E-value: 0.22
                   HHHHHHHH..HHHHSCEEHHHHHHHGCCSS- CS
  Sigma70_r1_1   6 avkeLikk..gKkkGyLtyeEindaLpddel 34 
                   av +Li++    + G + y+E  daL  d +
    KOO23684.1 305 AVDRLIAQcdQDANGEINYDEFVDALARDTV 335
                   5666666522346899**********98876 PP

>> EF-hand_4  Cytoskeletal-regulatory complex EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.1   0.0      0.87   8.7e+02      48      66 ..       4      22 ..       1      31 [. 0.78
   2 !    9.8   0.2   0.00075      0.75      35      66 ..      27      58 ..      10      65 .. 0.81
   3 ?    4.2   0.1     0.041        40      37      67 ..     163     193 ..     149     197 .. 0.85
   4 ?   -2.3   0.0       4.2   4.2e+03      45      65 ..     270     290 ..     263     299 .. 0.76
   5 ?    2.2   0.1      0.17   1.7e+02      44      67 ..     305     328 ..     293     332 .. 0.80

  Alignments for each domain:
  == domain 1  score: -0.1 bits;  conditional E-value: 0.87
   EF-hand_4 48 iwdladidedgkldfeefc 66
                 ++  d+d+ gkl+ ee+ 
  KOO23684.1  4 AFHYVDLDNSGKLNREELR 22
                5677899******999975 PP

  == domain 2  score: 9.8 bits;  conditional E-value: 0.00075
   EF-hand_4 35 lknskleedklekiwdladidedgkldfeefc 66
                l n  +++ k++++   +d d dg++d++ef+
  KOO23684.1 27 LWNIPITDAKIDELMAACDADGDGEVDYKEFV 58
                456778899999*******************8 PP

  == domain 3  score: 4.2 bits;  conditional E-value: 0.041
   EF-hand_4  37 nskleedklekiwdladidedgkldfeefci 67 
                 n  ++ + ++k+   +d d +g+++++ef+ 
  KOO23684.1 163 NIPIDRESVKKLIAQCDQDANGEINYDEFVD 193
                 5667788899999999*************85 PP

  == domain 4  score: -2.3 bits;  conditional E-value: 4.2
   EF-hand_4  45 lekiwdladidedgkldfeef 65 
                 + k +++ d+d+ g +   e+
  KOO23684.1 270 IRKAFHFVDVDNSGAVSRTEL 290
                 567788899999998876665 PP

  == domain 5  score: 2.2 bits;  conditional E-value: 0.17
   EF-hand_4  44 klekiwdladidedgkldfeefci 67 
                  ++++   +d d +g+++++ef+ 
  KOO23684.1 305 AVDRLIAQCDQDANGEINYDEFVD 328
                 5667777889999*********85 PP

>> DUF4110  Domain of unknown function (DUF4110)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.0   0.0     0.013        13      43      67 ..     115     139 ..      87     154 .. 0.80
   2 ?    6.7   0.0    0.0077       7.6      42      66 ..     246     273 ..     220     283 .. 0.79

  Alignments for each domain:
  == domain 1  score: 6.0 bits;  conditional E-value: 0.013
     DUF4110  43 kseKelkkeafelAeerywelrpvL 67 
                  + K+l+k+a ++  +++ ++r+++
  KOO23684.1 115 IDAKQLQKQATDAIAAKFTDVRKAF 139
                 689*******************654 PP

  == domain 2  score: 6.7 bits;  conditional E-value: 0.0077
     DUF4110  42 k...kseKelkkeafelAeerywelrpv 66 
                      + K+l+k+a ++  +++ ++r++
  KOO23684.1 246 LkkpVDAKQLQKQATDAIAAKFTDIRKA 273
                 2446899*******************76 PP

>> DUF4760  Domain of unknown function (DUF4760)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   0.0   0.00083      0.83      54     131 ..     116     193 ..      78     202 .. 0.82
   2 ?    2.7   0.0      0.13   1.3e+02      57     131 ..     254     328 ..     218     337 .] 0.80

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.00083
     DUF4760  54 eekksekgeeeserekiltvlNflEfvavgiesgildEdmikelsvttvikawdlleplikelredsnndkiyqeFea 131
                 + k+ +k++    + k+ +v  ++ fv v   +g+++ ++++ l   ++  +++ ++ li +  +d n +  y+eF  
  KOO23684.1 116 DAKQLQKQATDAIAAKFTDVRKAFHFVDVDNSGGVSEAELYRALDLFNIPIDRESVKKLIAQCDQDANGEINYDEFVD 193
                 445555555666677999999*******************************************************75 PP

  == domain 2  score: 2.7 bits;  conditional E-value: 0.13
     DUF4760  57 ksekgeeeserekiltvlNflEfvavgiesgildEdmikelsvttvikawdlleplikelredsnndkiyqeFea 131
                 + +k++    + k+ ++  ++ fv v   + ++  ++++ l   ++    ++++ li +  +d n +  y+eF  
  KOO23684.1 254 QLQKQATDAIAAKFTDIRKAFHFVDVDNSGAVSRTELYRALDLFNIPVSFEAVDRLIAQCDQDANGEINYDEFVD 328
                 44444455556688888889999999999999999999999999999999**********************975 PP

>> DUF1398  Protein of unknown function (DUF1398)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.3   0.0      0.69   6.8e+02      66      90 ..      39      63 ..      28      69 .. 0.78
   2 ?    5.1   0.0     0.022        22      61      90 ..     168     197 ..     152     202 .. 0.85
   3 ?    3.3   0.0     0.081        80      66      90 ..     308     332 ..     284     336 .. 0.82

  Alignments for each domain:
  == domain 1  score: 0.3 bits;  conditional E-value: 0.69
                HHHHHHHHHHHT---HHHHHHHHHH CS
     DUF1398 66 likaalkkhqqgettfetfcedlAk 90
                 + aa+++   ge+++++f+  lA+
  KOO23684.1 39 ELMAACDADGDGEVDYKEFVDVLAR 63
                555667777889*******999986 PP

  == domain 2  score: 5.1 bits;  conditional E-value: 0.022
                 ---HHHHHHHHHHHHHT---HHHHHHHHHH CS
     DUF1398  61 kknaelikaalkkhqqgettfetfcedlAk 90 
                 +++ +++ a++++   ge+++++f+  lA+
  KOO23684.1 168 RESVKKLIAQCDQDANGEINYDEFVDALAR 197
                 456778888999999***********9997 PP

  == domain 3  score: 3.3 bits;  conditional E-value: 0.081
                 HHHHHHHHHHHT---HHHHHHHHHH CS
     DUF1398  66 likaalkkhqqgettfetfcedlAk 90 
                  + a++++   ge+++++f+  lA+
  KOO23684.1 308 RLIAQCDQDANGEINYDEFVDALAR 332
                 45567788899*********99996 PP

>> SseB  SseB protein N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.4   0.4     0.021        21       2      48 ..      38      86 ..      37     135 .. 0.78
   2 ?    6.1   0.1     0.012        12       2      50 ..     172     222 ..     171     246 .. 0.68
   3 ?    1.8   0.0      0.28   2.8e+02       3      30 ..     308     335 ..     306     336 .. 0.89

  Alignments for each domain:
  == domain 1  score: 5.4 bits;  conditional E-value: 0.021
        SseB  2 eealaalrakeadpealaafleallnarvlvpvvaee..eeeeglkvdk 48
                +e++aa  a+++++ ++++f+++l++ +v  +++ +   + +e + vd 
  KOO23684.1 38 DELMAACDADGDGEVDYKEFVDVLARDTVAPAAMGKRdmQSKEAMGVDA 86
                7999********************9999976666655543322333443 PP

  == domain 2  score: 6.1 bits;  conditional E-value: 0.012
        SseB   2 eealaalrakeadpealaafleallnarvlvpvvaee..eeeeglkvdkea 50 
                 ++++a+  ++++++ ++++f++al++ +v  +++ +   + +e + vd +a
  KOO23684.1 172 KKLIAQCDQDANGEINYDEFVDALARDTVAPAAMGKRgmQSKEAMGVDAQA 222
                 6899999999***************99997777766665443333333333 PP

  == domain 3  score: 1.8 bits;  conditional E-value: 0.28
        SseB   3 ealaalrakeadpealaafleallnarv 30 
                 +++a+  ++++++ ++++f++al++ +v
  KOO23684.1 308 RLIAQCDQDANGEINYDEFVDALARDTV 335
                 7899999999*************99876 PP

>> DUF5580  Family of unknown function (DUF5580)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.9   0.0     0.032        31     328     387 ..       4      63 ..       1      99 [. 0.72
   2 ?    6.0   0.0    0.0037       3.7     198     387 ..     135     332 ..     128     336 .. 0.69

  Alignments for each domain:
  == domain 1  score: 2.9 bits;  conditional E-value: 0.032
     DUF5580 328 sFrkeDrsfsGlLpppkvraiCgkhglyltlslletllnhqdlgyqdeikWqnfvelLsr 387
                 +F+  D   sG L ++++r   +   + +t + ++ l+   d    +e+ +++fv++L r
  KOO23684.1   4 AFHYVDLDNSGKLNREELRRALDLWNIPITDAKIDELMAACDADGDGEVDYKEFVDVLAR 63 
                 455566666777777777777777777777777777777777777777777777777776 PP

  == domain 2  score: 6.0 bits;  conditional E-value: 0.0037
     DUF5580 198 lqkeLkilDPissGfllqsqlsrlflrhevPLqlPtvklLcqrFsrkgspelvnyeklLlfLke......aasdelqqsktvvdsnpk...ktesssde 287
                 ++k  + +D + sG +  ++l r +  +++P++   vk L+ +  +  + e +ny++++  L +      a+ +   qsk+++    +    + + ++ 
  KOO23684.1 135 VRKAFHFVDVDNSGGVSEAELYRALDLFNIPIDRESVKKLIAQCDQDANGE-INYDEFVDALARdtvapaAMGKRGMQSKEAMGVDAQaflDKVKVKNA 232
                 667778889999999999999999999999999999999999876666665.79999998886522222123333334444332222200122233344 PP

     DUF5580 288 kstapqdsssesevnk..slleiLkmalktakgklnlenLnlsFrkeDrsfsGlLpppkvraiCgkhglyltlslletllnhqdlgyqdeikWqnfvel 384
                 k+t ++d       +k  +  ++ k+a  +  +k+    ++ +F+  D   sG ++++++    +   + ++   ++ l+   d   ++ei++++fv+ 
  KOO23684.1 233 KATINNDDGPGTALKKpvDAKQLQKQATDAIAAKF--TDIRKAFHFVDVDNSGAVSRTELYRALDLFNIPVSFEAVDRLIAQCDQDANGEINYDEFVDA 329
                 45555555555544443344556666666665554..67888999999999999999999999999999999999999999999999999999999999 PP

     DUF5580 385 Lsr 387
                 L r
  KOO23684.1 330 LAR 332
                 988 PP

>> Tox-REase-3  Restriction endonuclease fold toxin 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.3   0.2     0.023        23      40      69 ..      76     105 ..      64     109 .. 0.91
   2 ?   -1.6   0.0       3.2   3.2e+03      56      82 ..     118     144 ..     110     172 .. 0.64
   3 ?    5.2   0.2     0.025        25      40      71 ..     210     241 ..     192     253 .. 0.87

  Alignments for each domain:
  == domain 1  score: 5.3 bits;  conditional E-value: 0.023
  Tox-REase-3  40 iqakralsqkpknflnkkvrkqikatieaa 69 
                  +q+k+a+  + + fl+k + k +kati+ a
   KOO23684.1  76 MQSKEAMGVDAQAFLDKVKVKNAKATINEA 105
                  699**99999*****************987 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 3.2
  Tox-REase-3  56 kkvrkqikatieaaeqsGkraefwfke 82 
                  k+++kq+ ++i a     ++a ++ + 
   KOO23684.1 118 KQLQKQATDAIAAKFTDVRKAFHFVDV 144
                  556666666665555555554444444 PP

  == domain 3  score: 5.2 bits;  conditional E-value: 0.025
  Tox-REase-3  40 iqakralsqkpknflnkkvrkqikatieaaeq 71 
                  +q+k+a+  + + fl+k + k +kati+  + 
   KOO23684.1 210 MQSKEAMGVDAQAFLDKVKVKNAKATINNDDG 241
                  6999999999*****************97665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (337 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       745  (0.0415528); expected 358.6 (0.02)
Passed bias filter:                      523  (0.0291706); expected 358.6 (0.02)
Passed Vit filter:                        52  (0.00290033); expected 17.9 (0.001)
Passed Fwd filter:                        18  (0.00100396); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              18  [number of targets reported over threshold]
# CPU time: 0.52u 0.27s 00:00:00.79 Elapsed: 00:00:00.40
# Mc/sec: 2508.85
//
Query:       KOO23685.1  [L=368]
Description: dTDP-glucose 4,6-dehydratase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.4e-65  221.1   0.0    2.8e-65  220.9   0.0    1.0  1  GDP_Man_Dehyd    GDP-mannose 4,6 dehydratase
    1.1e-57  195.3   0.1    1.4e-57  195.0   0.1    1.1  1  Epimerase        NAD dependent epimerase/dehydratase family
    6.8e-22   77.9   0.0    5.3e-21   75.0   0.0    1.9  1  Polysacc_synt_2  Polysaccharide biosynthesis protein
    1.1e-21   77.1   0.2    1.5e-21   76.7   0.2    1.1  1  3Beta_HSD        3-beta hydroxysteroid dehydrogenase/isomeras
    5.7e-17   61.7   0.2    3.5e-15   55.9   0.2    2.3  1  NAD_binding_4    Male sterility protein
    1.1e-16   60.8   0.0    1.6e-16   60.2   0.0    1.3  1  RmlD_sub_bind    RmlD substrate binding domain
    7.7e-09   35.7   0.0    1.3e-08   34.9   0.0    1.3  1  NAD_binding_10   NAD(P)H-binding
     0.0029   17.2   0.0     0.0045   16.6   0.0    1.4  1  NmrA             NmrA-like family
  ------ inclusion threshold ------
      0.049   13.3   0.0      0.076   12.7   0.0    1.2  1  Peripla_BP_6     Periplasmic binding protein


Domain annotation for each model (and alignments):
>> GDP_Man_Dehyd  GDP-mannose 4,6 dehydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  220.9   0.0   1.4e-68   2.8e-65       1     332 []      25     330 ..      25     330 .. 0.91

  Alignments for each domain:
  == domain 1  score: 220.9 bits;  conditional E-value: 1.4e-68
                    EEETTTSHHHHHHHHHHHHC..T-CCEEEEEEESS-TTHHHHHCTTT...TTGCCEEEEE--TT-HHHHHHHHHHHT-SEEEE--S---HHHHTTS CS
  GDP_Man_Dehyd   1 LiTGiaGfiGsylaelLlek..gyevhgivrrsssfntgriehlakdpkeeleenlklhkgDltDssslerllaevqpdevynLAAqshVdvsfek 94 
                    ++TG+aGfi s+++ +L+++  +y+v+ ++++++  ++++++++++       +n+k++kg+l  ++ ++ +l+   +d++++ AAq hVd+sf +
     KOO23685.1  25 MVTGGAGFIASHVVIQLVKQfpEYKVVCFDKLDYCSSLKNLNEVKD------CPNFKFIKGNLLSADLIKYVLETECIDTIIHAAAQTHVDNSFGN 114
                    69*****************966677777766666666666666553......479***************************************** PP

                    HHHHHHHHTHHHHHHHHHHHHCT..TTSEEEEEEEGGGG-S-S.SSSB-TTS-----SHHHHHHHHHHHHHHHHHHHH---EEEEEE-EEESTTS- CS
  GDP_Man_Dehyd  95 PeytaevnvlGtlrLLeairalglekkvrfyqaStsEvYGkvq.evpqtEttpfyPrsPYaaaKlyadwivvnyreayglfavngilfnhesprrg 189
                    + +++e+nv+G + L+ea++ +g++   rf+++St+EvYG+v  ++   Et  ++P++PYaa+K++a+ iv+ y+++++l++++++  n  +p++ 
     KOO23685.1 115 SFAFTENNVMGSHVLVEAAKVHGIK---RFIHVSTDEVYGTVGdDIRRVETDVLEPTNPYAATKAAAENIVKPYYHSFKLPVIITRGNNVFGPHQ- 206
                    ***********************85...**************8356679*********************************************6. PP

                    TTSCCCHHHHHHHHHHTTS-C-EECTTTT-EEEEEEHHHHHHHHHHHHHCSS---EEE-TT-EEECHHCHHCCHHCCCHHHHHH............ CS
  GDP_Man_Dehyd 190 etfvtrkitravarialgkqevlylGnldakRdwghvkDyveamwlmlqqdkpedyviatgethsvrefvelaflelgktiewegkgeeevgrake 285
                      f+++ i+++v r + g  ++ + G++++ R + +v D++ a+ ++l+++        +get++++   e ++le+ +++++          + +
     KOO23685.1 207 --FPEKVIPKFVRRLLGGM-PCCIHGDGSNSRHYIYVGDVAAAFMTILHKGV-------DGETYNIGCETEFTNLEVAQRLVKAL--------KPD 284
                    ..**********9977776.9999*************************996.......8*******999999999999877643........245 PP

                    TTGGCCCEECGG--SS--SB--B-THHHHHHH----SS-HHHHHHHH CS
  GDP_Man_Dehyd 286 sgkvvvevdpkyfrpgevdlllgdaskakeeLgWkpkvsfeelvrem 332
                     ++ + +++++ +r  ++ ++++  +k++ +LgW pk+sfee+++++
     KOO23685.1 285 CSDPKEHISFVGDRAFNDVRYYISSDKLH-QLGWAPKMSFEEGLQKT 330
                    6677788999******************9.9************9986 PP

>> Epimerase  NAD dependent epimerase/dehydratase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  195.0   0.1   6.9e-61   1.4e-57       1     241 []      24     263 ..      24     263 .. 0.98

  Alignments for each domain:
  == domain 1  score: 195.0 bits;  conditional E-value: 6.9e-61
                 EEEETTTSHHHHHHHHHHHHCT..SEEEEEES-STTTTCHHCHHC......EEEE--TT-HHHHHHHHHHHT-SEEEE--S---HHHHHHSHHHHHHHH CS
   Epimerase   1 ilVtGatGfiGsalvkallekg..yevigldrlssasntarledl......elveldltdrsalerlfkeeqpdavihlAavggvaassedpadfiekn 91 
                 i+VtG++Gfi s++v +l ++   y+v+++d+l + s  ++l+++      ++++++l+ ++ ++ ++++e +d++ih+Aa+ +v++s+ +  +f e+n
  KOO23685.1  24 IMVTGGAGFIASHVVIQLVKQFpeYKVVCFDKLDYCSSLKNLNEVkdcpnfKFIKGNLLSADLIKYVLETECIDTIIHAAAQTHVDNSFGNSFAFTENN 122
                 79*****************99889*************************************************************************** PP

                 THHHHHHHHHHHHHTCTEEEEEEEGGGGTSCSSSSBSTCSTTS----SSHHHHHHHHHHHHHHHHHHHHT-EEEEEEESEEESTTS-TTSTTSHHHHHH CS
   Epimerase  92 lqgtlnlleaarkagvkrllflsSsevYGkdaeqpkeettltgplkpnspYaaaKlageklveayaaqyglnaiilrlfnlyGprngegevsrvipali 190
                 ++g+  l+eaa+ +g+kr++++s++evYG + +  +   ++t+ l+p++pYaa+K+a+e++v+ y ++++l++ii+r  n++Gp+   +++++vip+++
  KOO23685.1 123 VMGSHVLVEAAKVHGIKRFIHVSTDEVYGTVGD--DIRRVETDVLEPTNPYAATKAAAENIVKPYYHSFKLPVIITRGNNVFGPH---QFPEKVIPKFV 216
                 *********************************..7788888899****************************************...9********** PP

                 HHHHTTSSSEEEETTST-EEEEEEHHHHHHHHHHHHHHHTT-STTEEEEES CS
   Epimerase 191 rkilegkqevtllgdgtalRdflyveDvaeaillvlehvdagdkgeiyniG 241
                 r++l g  ++ + gdg++ R ++yv Dva a++++l +   g +ge+yniG
  KOO23685.1 217 RRLLGGM-PCCIHGDGSNSRHYIYVGDVAAAFMTILHK---GVDGETYNIG 263
                 ******9.******************************...999******9 PP

>> Polysacc_synt_2  Polysaccharide biosynthesis protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   75.0   0.0   2.6e-24   5.3e-21       1     265 [.      24     298 ..      24     301 .. 0.84

  Alignments for each domain:
  == domain 1  score: 75.0 bits;  conditional E-value: 2.6e-24
                      EEEETTTSHHHHHHHHHHHHHB-S.EEEEEES-HHHHHHHHHH......-TTEEEE....E--TT-HHHHHHHTT..T-SEEEE------HHHH CS
  Polysacc_synt_2   1 vlvtGagGsiGselvrqilkkkpk.kiillerdElklyeiekeleeelkkkklkveivpvigdvrdkerlekaleelkvdvvfhaAAlKhVPlv 93 
                      ++vtG++G i s++v q++k+ p+ k++ +++ ++     + +  +++ +  +  +   + g++  ++ ++ +le+  +d+++haAA  hV   
       KOO23685.1  24 IMVTGGAGFIASHVVIQLVKQFPEyKVVCFDKLDYCSSLKNLNEVKDCPN--F--K--FIKGNLLSADLIKYVLETECIDTIIHAAAQTHVDNS 111
                      8******************9955438999999887544322222223333..3..3..4579******************************** PP

                      HHSHHHHHHHHHHHHHHHHHHHHHTT-SEEEEEEEGGG...............SS--SHHHHHHHHHHHHHHHGGG--SSS--EEEEEEE-EET CS
  Polysacc_synt_2  94 eenpleaiktNvlgtenvieaaieagvkkvvliStDKA...............vnPtnvmGatKrlaekllqalakeseekktkfvvvRfGNVl 172
                        n +   ++Nv+g++ ++eaa+ +g+k+++ +StD                  +Ptn + atK++ae ++  + ++    k  ++++R  NV+
       KOO23685.1 112 FGNSFAFTENNVMGSHVLVEAAKVHGIKRFIHVSTDEVygtvgddirrvetdvLEPTNPYAATKAAAENIVKPYYHSF---KLPVIITRGNNVF 202
                      ************************************7533333333332222268****************9988877...899********** PP

                      TGT...TSSHHHHHHHHHTTSSEEES.-TT-EEEEE-HHHHHHHHHHHHHH--SS-EEEE--.-EEEHHHHHHHH..........SSSS-EEE- CS
  Polysacc_synt_2 173 gSr...GSviplFkkqikeggpvtvT.dpemtRyfmtieeavqLvlqalalakggeifvldmGepvkivdlakalielsgleekkeedieikit 262
                      g +     vip+F +++  g p  +  d +  R+++ + + +   ++ l+++ +ge +       ++ +++a++l++  + + + +++ +i+++
       KOO23685.1 203 GPHqfpEKVIPKFVRRLLGGMPCCIHgDGSNSRHYIYVGDVAAAFMTILHKGVDGETYNIGCETEFTNLEVAQRLVKALKPDCS-DPKEHISFV 295
                      *9733358****************9538899***************************99999999999******988876555.589999999 PP

                      --- CS
  Polysacc_synt_2 263 GlR 265
                      G R
       KOO23685.1 296 GDR 298
                      987 PP

>> 3Beta_HSD  3-beta hydroxysteroid dehydrogenase/isomerase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   76.7   0.2   7.5e-25   1.5e-21       1     226 [.      25     248 ..      25     262 .. 0.84

  Alignments for each domain:
  == domain 1  score: 76.7 bits;  conditional E-value: 7.5e-25
   3Beta_HSD   1 vvtGgaGFlGralvkeLvrleelkevrvlD...lrespelleelskvnvkkviegDvtdkdkleealeg..vdvvihlaslvdvagklted.eimkvnv 93 
                 +vtGgaGF+ +++v +Lv+  +  +v  +D      s + l+e++ + + k+i+g ++++d ++ +le   +d +ih a+ + v + + +   + + nv
  KOO23685.1  25 MVTGGAGFIASHVVIQLVKQFPEYKVVCFDkldYCSSLKNLNEVKDCPNFKFIKGNLLSADLIKYVLETecIDTIIHAAAQTHVDNSFGNSfAFTENNV 123
                 59*****************99999999999433344555567788888888***************97544899**********9966554268999** PP

   3Beta_HSD  94 kGTrnvleacvkagvrvlvYtSsaevvgpnslgeeilngdEeleyeslhqdaypesKalaEklvlkaNgrtlknggrlyTcaLRpagiyGegd..kllv 190
                  G + ++ea++ +g+++++++S+ ev g    g++i++  E+      ++++y+ +Ka aE++v+           +l  +  R   ++G+ +  +++ 
  KOO23685.1 124 MGSHVLVEAAKVHGIKRFIHVSTDEVYGT--VGDDIRRV-ETDV--LEPTNPYAATKAAAENIVKPYYH-----SFKLPVIITRGNNVFGPHQfpEKVI 212
                 ****************************9..9****944.3333..347899************98887.....447889999********96445667 PP

   3Beta_HSD 191 pllkqlaklglalfkigdeevlsdrvYvgNvawahi 226
                 p +++ +  g+  +  gd ++   ++Yvg va a +
  KOO23685.1 213 PKFVRRLLGGMPCCIHGDGSNSRHYIYVGDVAAAFM 248
                 777777778889*******************98865 PP

>> NAD_binding_4  Male sterility protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.9   0.2   1.8e-18   3.5e-15       1     209 [.      26     205 ..      26     235 .. 0.81

  Alignments for each domain:
  == domain 1  score: 55.9 bits;  conditional E-value: 1.8e-18
                    EE-TTSHHHHHHHHHHHHHS-.TEEEEEE-SSSHHHHHHHHHHHT-SS-HHHHHHHHHTTTEEEEE--TTSGGGG--HHHHHHHHHH--EEEE--S CS
  NAD_binding_4   1 lTGaTGFLGkvLlekLLrttpevkiyllvRaksgesaeeRleeelekkelfsallkelaerikvveGDlseprlGLseedlqelaeevdviihsaA 96 
                    +TG+ GF++++++ +L+++ pe+k+++  + +   s ++ l +e+++++             k+++G+l   +l     ++   +e +d iih aA
     KOO23685.1  26 VTGGAGFIASHVVIQLVKQFPEYKVVCFDKLDYC-SSLKNL-NEVKDCPN-----------FKFIKGNLLSADL----IKYVLETECIDTIIHAAA 104
                    7**************************9777644.667777.55555555...........5678899977775....233344789********* PP

                    S-S.STTSSE...EHHHHHHHHHHHHHHHTSSS--.-EEEEEEGGGTTS-TTT--SSS-H......HHH--EEEETTTCCCHHHHHHHHHHHHHHH CS
  NAD_binding_4  97 tvnfdepyke...llrvNveGtrevlelakklkklkvllhvSTayvngeregeveekvyeegekeekldederaklkglpntYeqsKalaEklvre 189
                    ++++d++  +   + + Nv+G + ++e ak     k ++hvST  v+g+  + +                  +++  + +n Y  +Ka+aE++v+ 
     KOO23685.1 105 QTHVDNSFGNsfaFTENNVMGSHVLVEAAKVH-GIKRFIHVSTDEVYGTVGDDI---------------RRVETDVLEPTNPYAATKAAAENIVKP 184
                    ******99985556789*****9999999955.555*******99999999765...............55677788899**************** PP

                    HHHHH---EEEEEE-EEE-.- CS
  NAD_binding_4 190 arrrsglpvvivRpsiitg.e 209
                    + ++ +lpv+i R  ++ g +
     KOO23685.1 185 YYHSFKLPVIITRGNNVFGpH 205
                    *************99998862 PP

>> RmlD_sub_bind  RmlD substrate binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.2   0.0   8.2e-20   1.6e-16       2     239 ..      23     289 ..      22     335 .. 0.82

  Alignments for each domain:
  == domain 1  score: 60.2 bits;  conditional E-value: 8.2e-20
                    EEEEESTTSHHHHHHHHHCTT..TSEEEEEE-TT.....................T--TTSHHHHHHHHHHH--SEEEE------HHHHHHSHHHH CS
  RmlD_sub_bind   2 kilvtGanGqlGseLakqlae..eglevlaltre.....................eldltdaeavaellkeakpdvvvnaAAytavDkaEseeeaa 74 
                    +i+vtG+ G ++s+++ ql +   +++v+ +++                      + +l  a+ ++ +l+    d +++aAA t vD+   ++ a 
     KOO23685.1  23 NIMVTGGAGFIASHVVIQLVKqfPEYKVVCFDKLdycsslknlnevkdcpnfkfiKGNLLSADLIKYVLETECIDTIIHAAAQTHVDNSFGNSFAF 118
                    69***********99888876345788888877799************************************************************ PP

                    HHHHTHHHHHHHHHHHHCT-E.EEEEEEGGGS-S-TTS-.B-TTS----SSHHHHHHHHHHHHHHH....H-SSEEEEEE-SEESS..SSS-HHHH CS
  RmlD_sub_bind  75 yavnaeavealAeaaaavgal.LihvStDyVFdGekkrp.YeeddetsPlnvYGrtKlaGEqavla....agkkalivRtswvyge..kgknfvkt 162
                     + n+ +++ l eaa+ +g++ +ihvStD V+    ++    e+d  +P n Y++tK+a E+ v+      +  ++i R   v+g     +  + +
     KOO23685.1 119 TENNVMGSHVLVEAAKVHGIKrFIHVSTDEVYGTVGDDIrRVETDVLEPTNPYAATKAAAENIVKPyyhsFKLPVIITRGNNVFGPhqFPEKVIPK 214
                    *******************955**********87755544899*********************98443233467899******983356888889 PP

                    HHHHHHH-SEEEEESS-E..E--EEHHHHHHHHHHHHHHCHH.GGG-EEEE---BS-EEHHHHHHHHHHHHCHTTSEEE CS
  RmlD_sub_bind 163 mlrlakereelkvvaDql..gsPTsardlAevllqllekaaeekelagvyHlanegetswlefArailkeagadseevk 239
                    ++r++    +  +  D    +   ++ d+A++ +++l+k ++     ++y +++e e + le+A+  +k+++ d ++ k
     KOO23685.1 215 FVRRLLGGMPCCIHGDGSnsRHYIYVGDVAAAFMTILHKGVD----GETYNIGCETEFTNLEVAQRLVKALKPDCSDPK 289
                    999999999999999966115567899**************8....99*******************999988764444 PP

>> NAD_binding_10  NAD(P)H-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.9   0.0   6.7e-12   1.3e-08       1     132 [.      28     183 ..      28     195 .. 0.82

  Alignments for each domain:
  == domain 1  score: 34.9 bits;  conditional E-value: 6.7e-12
                     TTTSHHHHHHHHHHHHC-.T-EEEEE.....ETTHHHCHHHHCTTTCEEEE--TT-CCHHHHHHT..T-SEEEES---TCCHHHH.......... CS
  NAD_binding_10   1 GAtGkvGrllvkellarg.ghevtal.....vRnpeklaeleaeeglevvegdvtdvedlaealk..gadaVvsalggggkdeeg.......... 77 
                     G+ G +++++v +l+++  +++v+ +       + + l+e+++ ++ + ++g++++++ ++ +l+   +d+++ a+++++ d+            
      KOO23685.1  28 GGAGFIASHVVIQLVKQFpEYKVVCFdkldyCSSLKNLNEVKDCPNFKFIKGNLLSADLIKYVLEteCIDTIIHAAAQTHVDNSFgnsfaftenn 122
                     999**************999999988332212345677788888********************7435699**9998887755556666777666 PP

                     ...HHHHHHHHHHCT--EEEEEEETTTTSGCGCHHHHHHHHCC...HHHHHHHHHHHHHHH CS
  NAD_binding_10  78 ...aknivdaakeagvkRfvlvsaigvgdevpgefgewnkell...kaylaakraaeellr 132
                           +v+aak +g+kRf+ vs+  v+  v ++  ++ +++l   ++y+a k+aae++++
      KOO23685.1 123 vmgSHVLVEAAKVHGIKRFIHVSTDEVYGTVGDDIRRVETDVLeptNPYAATKAAAENIVK 183
                     7778888**********************99999999999866333788999999999986 PP

>> NmrA  NmrA-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   0.0   2.3e-06    0.0045       1     130 [.      24     183 ..      24     267 .. 0.68

  Alignments for each domain:
  == domain 1  score: 16.6 bits;  conditional E-value: 2.3e-06
                 EEESSTTSHHHHHHHHHHHHHT-EEEEEES-S.....-SHHHHHHHHSTT.EEEES-TT..............-HHHHHHHHTT-SEEEE---GG.... CS
        NmrA   1 IlviGaTGrqGksvvrallkaghkvralvRdt.....kselakslkeaGv.elvkgdld..............dkeslvealkgvdvvfsvtgfy.... 75 
                 I+v+G++G ++++vv  l+k+  + +++  d      + ++++++k+ ++ +++kg+l               d            +++ + + +    
  KOO23685.1  24 IMVTGGAGFIASHVVIQLVKQFPEYKVVCFDKldycsSLKNLNEVKDCPNfKFIKGNLLsadlikyvleteciD------------TIIHAAAQThvdn 110
                 89******************6666666666666789888999*******95677**999455555555444433............4443333223444 PP

                 .........S-HHHHHHHHHHHHHHHS-SEEE.......EEE---GG.GT.SS..S---TTTHHHHHHHHHHH CS
        NmrA  76 .........skeiedgkklvdAakeaGvkhfi.......ySslgddndrsnae..epavphfdsKaeieeyvr 130
                          ++++     lv+Aak  G+k+fi       y ++gdd +r++ +  ep  p  ++Ka  e+ v+
  KOO23685.1 111 sfgnsfaftENNVMGSHVLVEAAKVHGIKRFIhvstdevYGTVGDDIRRVETDvlEPTNPYAATKAAAENIVK 183
                 4445555679999999***************832222224556666554433212566666666666666665 PP

>> Peripla_BP_6  Periplasmic binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   3.8e-05     0.076      98     151 ..     101     154 ..      89     160 .. 0.87

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 3.8e-05
                   ESS-HHC.CTTSTTEEESS--HHHHHHHHHHHHHHHTTSCEEEEEEESSHHHHHH CS
  Peripla_BP_6  98 gpagltg.ekcspyvfslgpsysaqasalveylakelggkkvalvyadyafgreg 151
                   ++a+ t  ++ +++ f +++++ +    lve+ ak +g+k++ +v++d  +g+ g
    KOO23685.1 101 HAAAQTHvDNSFGNSFAFTENNVMGSHVLVEA-AKVHGIKRFIHVSTDEVYGTVG 154
                   55544533899********************5.9****************99865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (368 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       420  (0.0234257); expected 358.6 (0.02)
Passed bias filter:                      380  (0.0211947); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.51u 0.27s 00:00:00.78 Elapsed: 00:00:00.40
# Mc/sec: 2755.36
//
Query:       KOO23686.1  [L=129]
Description: hypothetical protein Ctob_004076 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    5.2e-11   42.9  10.4    7.5e-11   42.4  10.4    1.2  1  Tim17            Tim17/Tim22/Tim23/Pmp24 family
  ------ inclusion threshold ------
          4    7.9  13.6        1.3    9.4   4.1    2.7  2  Romo1            Reactive mitochondrial oxygen species modula
        8.1    6.4  17.6       0.15   12.0   2.3    3.0  3  Rick_17kDa_Anti  Glycine zipper 2TM domain


Domain annotation for each model (and alignments):
>> Tim17  Tim17/Tim22/Tim23/Pmp24 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.4  10.4   1.3e-14   7.5e-11       7     109 ..      15     113 ..       9     115 .. 0.85

  Alignments for each domain:
  == domain 1  score: 42.4 bits;  conditional E-value: 1.3e-14
       Tim17   7 lsgvlGallGavfglvkgsrradtpapskerlreglrsvgkrgpslGknfgvvgglysgiecaleklRgkediwnsvaAGaltGall..rag.pqaaav 102
                    + G+++G+++gl +++++ ++   ++e+    l+ vgk +  ++  f++++g+++++++ l++ Rg + ++nsvaAG+++Ga++  r+g p  aa 
  KOO23686.1  15 NYTAGGVVAGSLIGLASAAYSKPA---VGEM---SLAYVGKTTGGHAAMFAAMAGIFAATDTFLDQSRG-HSALNSVAAGCAAGAVVgaRQGdPTRAAF 106
                 556789***************996...5555...56789****************************97.556*************9754555999999 PP

       Tim17 103 gaiggaa 109
                 g+++++ 
  KOO23686.1 107 GCALFGT 113
                 9999875 PP

>> Romo1  Reactive mitochondrial oxygen species modulator 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   4.1   0.00022       1.3      17      59 ..      20      63 ..      17      67 .. 0.87
   2 ?    3.0   2.0     0.022   1.3e+02       2      21 ..      80      99 ..      79     120 .. 0.73

  Alignments for each domain:
  == domain 1  score: 9.4 bits;  conditional E-value: 0.00022
       Romo1 17 GlaiGllfGtfsalryg.lrgrgllrtlgksmlgsaatFGfFms 59
                G+++G l+G++sa  ++ + g++ l ++gk++ g aa+F+   +
  KOO23686.1 20 GVVAGSLIGLASAAYSKpAVGEMSLAYVGKTTGGHAAMFAAMAG 63
                8999*******99999945689999**************97655 PP

  == domain 2  score: 3.0 bits;  conditional E-value: 0.022
       Romo1  2 cldkikmGalmGaaVGlaiG 21
                 l+++ +G + Ga+VG+  G
  KOO23686.1 80 ALNSVAAGCAAGAVVGARQG 99
                56788889999999997544 PP

>> Rick_17kDa_Anti  Glycine zipper 2TM domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.2   2.0    0.0067        40      27      38 ..      17      28 ..      15      32 .. 0.82
   2 ?   -1.9   0.3      0.55   3.3e+03      14      19 ..      48      53 ..      44      67 .. 0.51
   3 ?   12.0   2.3   2.5e-05      0.15       4      36 ..      85     114 ..      82     115 .. 0.86

  Alignments for each domain:
  == domain 1  score: 4.2 bits;  conditional E-value: 0.0067
  Rick_17kDa_Anti 27 avvGAaaGavaG 38
                     +++G++aG+++G
       KOO23686.1 17 TAGGVVAGSLIG 28
                     788888888888 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 0.55
  Rick_17kDa_Anti 14 Gaaigg 19
                     G   gg
       KOO23686.1 48 GKTTGG 53
                     333322 PP

  == domain 3  score: 12.0 bits;  conditional E-value: 2.5e-05
  Rick_17kDa_Anti   4 liGAaaGgvaGaaigggggrvlGavvGAaaGav 36 
                      ++G aaG+v+Ga+ g+    +++a ++A+ G+v
       KOO23686.1  85 AAGCAAGAVVGARQGD---PTRAAFGCALFGTV 114
                      7899**********66...89999999998876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (129 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       516  (0.0287802); expected 358.6 (0.02)
Passed bias filter:                      255  (0.0142228); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.39u 0.25s 00:00:00.64 Elapsed: 00:00:00.40
# Mc/sec: 965.26
//
Query:       KOO23687.1  [L=922]
Description: cytochrome b5 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    8.8e-10   38.6   0.0      2e-09   37.4   0.0    1.6  1  Cyt-b5        Cytochrome b5-like Heme/Steroid binding domain
  ------ inclusion threshold ------
       0.11   12.6   0.1       0.23   11.5   0.1    1.5  1  DZR           Double zinc ribbon
       0.33   11.2   1.8        0.7   10.1   1.8    1.5  1  NOB1_Zn_bind  Nin one binding (NOB1) Zn-ribbon like


Domain annotation for each model (and alignments):
>> Cyt-b5  Cytochrome b5-like Heme/Steroid binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.4   0.0   3.4e-13     2e-09      11      72 ..     250     311 ..     233     313 .. 0.86

  Alignments for each domain:
  == domain 1  score: 37.4 bits;  conditional E-value: 3.4e-13
                 TTEEEEEETTEEEECTTTCCCSTTCSHHHHTTTTS.BBHHHHHHTTGGCHHHHHHHHGGEEEE CS
      Cyt-b5  11 kndlwvairgkVYDvskflskhpGgesailkyaGk.DateafksvvhsekdaekllkkylvGk 72 
                 +n+l+++++g VYDv+ f+ khpGg+ +++++ G  D ++ f+ + hse+ a+ l+++++v +
  KOO23687.1 250 ENKLLIVVDGIVYDVTAFAAKHPGGRYPFENHSGNlDSSDSFHRIGHSET-ARILMREFAVAT 311
                 6799******************************99***********999.677777787765 PP

>> DZR  Double zinc ribbon
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.1   3.8e-05      0.23      28      49 .]     890     913 ..     859     917 .. 0.74

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 3.8e-05
         DZR  28 edrCpsCgekvd..pearfCpeCG 49 
                 + rC  C + ++  pe+rfC+ CG
  KOO23687.1 890 HVRCLYCRAVLTkyPEQRFCKDCG 913
                 677777777743236777777777 PP

>> NOB1_Zn_bind  Nin one binding (NOB1) Zn-ribbon like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   1.8   0.00012       0.7       6      30 ..     888     913 ..     885     916 .. 0.86

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.00012
  NOB1_Zn_bind   6 swvlrChaCfkvtkd.mtkkFCpkCG 30 
                   ++ +rC  C  v ++  +++FC+ CG
    KOO23687.1 888 KFHVRCLYCRAVLTKyPEQRFCKDCG 913
                   6889*******8866599*******9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (922 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       575  (0.0320709); expected 358.6 (0.02)
Passed bias filter:                      374  (0.0208601); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.65u 0.28s 00:00:00.93 Elapsed: 00:00:00.43
# Mc/sec: 6501.85
//
Query:       KOO23688.1  [L=220]
Description: hypothetical protein Ctob_004074 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    7.5e-11   42.9   0.0    1.1e-10   42.4   0.0    1.3  1  CS        CS domain
  ------ inclusion threshold ------
      0.034   14.5   0.0       0.51   10.8   0.0    2.2  2  PIH1_CS   PIH1 CS-like domain


Domain annotation for each model (and alignments):
>> CS  CS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.4   0.0   1.2e-14   1.1e-10       2      68 ..     119     189 ..     118     202 .. 0.86

  Alignments for each domain:
  == domain 1  score: 42.4 bits;  conditional E-value: 1.2e-14
                 SCEEEEETTEEEEEEE-TTCTTTTTCEEEEEETTEEEEEE.....TSCEEEEECEBSS-BETTTEEEEEETT CS
          CS   2 kydWyQtldeVvvtiyvkkvnikkkdvkvefkerslkvki.....gkeklliegeLfgpIdpeesswtiesk 68 
                  y+W+Qt+++++vt+ ++  ++ k+dvkv+ + +slkv +      + ++l++ +Lf+ + p+e +wt+ ++
  KOO23688.1 119 QYKWAQTPTDLEVTLALPA-GTLKRDVKVSVGAKSLKVDVkssadANAPPLVDLKLFAAVRPDEMTWTLSGT 189
                 59*****************.***************99999777744444445555**************975 PP

>> PIH1_CS  PIH1 CS-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   5.7e-05      0.51      28      71 ..     124     172 ..     118     185 .. 0.80
   2 ?    1.4   0.0     0.049   4.4e+02      39      63 ..     193     217 ..     176     219 .. 0.87

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 5.7e-05
     PIH1_CS  28 nvpkelaieielPllksikevklrvgerrleleskk.....akyfLslk 71 
                 + p+ l +++ lP  +  ++vk+ vg+++l+++ k+     a +  +lk
  KOO23688.1 124 QTPTDLEVTLALPAGTLKRDVKVSVGAKSLKVDVKSsadanAPPLVDLK 172
                 6899****************************77664343345555555 PP

  == domain 2  score: 1.4 bits;  conditional E-value: 0.049
     PIH1_CS  39 lPllksikevklrvgerrleleskk 63 
                 lP+l+ + e ++ v+ +rle++s++
  KOO23688.1 193 LPQLQVMVEKAVSVTWSRLEVASEG 217
                 9*******************99876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (220 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       284  (0.0158403); expected 358.6 (0.02)
Passed bias filter:                      219  (0.0122148); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.42u 0.24s 00:00:00.65 Elapsed: 00:00:00.41
# Mc/sec: 1609.95
//
Query:       KOO23689.1  [L=613]
Description: hypothetical protein Ctob_004082 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (613 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       536  (0.0298957); expected 358.6 (0.02)
Passed bias filter:                      430  (0.0239835); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.53u 0.27s 00:00:00.80 Elapsed: 00:00:00.41
# Mc/sec: 4530.55
//
Query:       KOO23690.1  [L=147]
Description: hypothetical protein Ctob_004083 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (147 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       299  (0.0166769); expected 358.6 (0.02)
Passed bias filter:                      219  (0.0122148); expected 358.6 (0.02)
Passed Vit filter:                         9  (0.00050198); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.23s 00:00:00.57 Elapsed: 00:00:00.37
# Mc/sec: 1192.13
//
Query:       KOO23691.1  [L=137]
Description: hypothetical protein Ctob_004080 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
  ------ inclusion threshold ------
       0.01   16.1   0.0      0.018   15.2   0.0    1.4  1  CTP_transf_like  Cytidylyltransferase-like
       0.08   13.5   0.0       0.12   12.9   0.0    1.3  1  ATP-synt_ab_N    ATP synthase alpha/beta family, beta-barrel 


Domain annotation for each model (and alignments):
>> CTP_transf_like  Cytidylyltransferase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.2   0.0     2e-06     0.018      47     143 .]       2     111 ..       1     111 [. 0.67

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 2e-06
                      THHHHHHHHHHHTTCTTEEEEEEESEHH..HHHHHTTTTEEEEEEEHHHHHHHHCHH.................HHHHHHHHHHHEEEEEEHTT CS
  CTP_transf_like  47 saeeRlemlelakevdevisvdpweltr..evlkklkpdklylvigadvledfsewk.................eleeilgnvklvvvsrpekq 121
                      s +eR ++l ++ +v+ vi++d ++++    +l+++++d  +l  g++ ++ + +++                 +   + g+++ + ++r+ ++
       KOO23691.1   2 SFAERRATLLALPWVSGVIPIDRFDCEFsaAFLEEHHVD--VLCYGEE-YDPVLNPEfakrvasgmapdfyrvaRTGGVTGRREQAAERRE-SR 91 
                      668999999999***************999*********..7777765.444334444445555555522222244445555554444444.44 PP

                      CEEEEEEECCTTTCSHHHHHHH CS
  CTP_transf_like 122 anvllkaekrtngiSstkirer 143
                      a+      +rt g+S+++i++r
       KOO23691.1  92 AR--AVVLPRTAGVSTSEIIQR 111
                      44..44566999*******987 PP

>> ATP-synt_ab_N  ATP synthase alpha/beta family, beta-barrel domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   1.4e-05      0.12      18      67 ..      65     111 ..      57     113 .. 0.85

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 1.4e-05
                    ETCTTEEEEECCETCSTEEEEEEEEEETTEEEEEESS-STTBBTTSEEEE CS
  ATP-synt_ab_N  18 lpgiynalevelvefgtlllgvalnlgedkVrvivmgstdGlsrGteVkr 67 
                    +p  y + +++   + t+++++a + +e ++r++v+  t G+s  + + r
     KOO23691.1  65 APDFYRVARTG---GVTGRREQAAERRESRARAVVLPRTAGVSTSEIIQR 111
                    57778888888...478**************************9988876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (137 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       376  (0.0209716); expected 358.6 (0.02)
Passed bias filter:                      286  (0.0159518); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.41u 0.23s 00:00:00.64 Elapsed: 00:00:00.40
# Mc/sec: 1019.27
//
Query:       KOO23692.1  [L=277]
Description: hypothetical protein Ctob_004081 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (277 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       272  (0.015171); expected 358.6 (0.02)
Passed bias filter:                      249  (0.0138881); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.39u 0.26s 00:00:00.65 Elapsed: 00:00:00.40
# Mc/sec: 2084.58
//
Query:       KOO23693.1  [L=389]
Description: 30s ribosomal protein s4 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.1e-08   34.6   0.0      2e-08   33.8   0.0    1.4  1  S4             S4 domain
     0.0007   19.5   0.3     0.0023   17.8   0.3    1.9  1  Nudix_N_2      Nudix N-terminal
  ------ inclusion threshold ------
       0.01   15.7   0.0      0.029   14.3   0.0    1.8  1  zinc_ribbon_4  zinc-ribbon domain
      0.019   14.8   0.0      0.034   14.0   0.0    1.4  1  S4_2           S4 domain


Domain annotation for each model (and alignments):
>> S4  S4 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.8   0.0   4.4e-12     2e-08       2      48 .]      29      75 ..      28      75 .. 0.98

  Alignments for each domain:
  == domain 1  score: 33.8 bits;  conditional E-value: 4.4e-12
                EHHHHHHHTTSSSSHHHHHHHHHTTTEEETTEEE--TT-EE-TTCEE CS
          S4  2 RLdkvlarlglassrreArqlIehGrVlVNGkvvkdpsyrVkpgDvi 48
                RLd +l+r   ++s+  Ar ++ hG+V VNG+vv+    +++pgD++
  KOO23693.1 29 RLDRFLYRCNAVPSIFAARFACGHGHVMVNGRVVRQTHRILEPGDIV 75
                9********************************************97 PP

>> Nudix_N_2  Nudix N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.8   0.3   5.1e-07    0.0023       3      31 ..     280     310 ..     280     311 .. 0.91

  Alignments for each domain:
  == domain 1  score: 17.8 bits;  conditional E-value: 5.1e-07
                 -TTT--B-E..EE--TT-SS-EEEETTTTEE CS
   Nudix_N_2   3 CsqCGtpve..lripdgDnreRlvCpaCgti 31 
                 C++C  p++   +  d D ++Rl+C +Cgt+
  KOO23693.1 280 CRACTFPLSssSASKDADGKMRLTCGSCGTV 310
                 9******99667778***************8 PP

>> zinc_ribbon_4  zinc-ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   0.0   6.4e-06     0.029       1      18 [.     300     317 ..     300     320 .. 0.93

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 6.4e-06
  zinc_ribbon_4   1 MkitCpsCkakyeiddek 18 
                    M+ tC sC+++y+++d +
     KOO23693.1 300 MRLTCGSCGTVYSLEDGQ 317
                    **************9975 PP

>> S4_2  S4 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.0   7.5e-06     0.034       9      58 ..      29      78 ..      23      84 .. 0.90

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 7.5e-06
        S4_2  9 tLgqlLKlaglvesGgeaKafiaegeVkvNGevetrRgkKlraGdvVeid 58
                +L+ +L  +++v s  +a++    g+V vNG v  +  + l +Gd+Ve +
  KOO23693.1 29 RLDRFLYRCNAVPSIFAARFACGHGHVMVNGRVVRQTHRILEPGDIVEPA 78
                6889999999999999*******************************965 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (389 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       421  (0.0234815); expected 358.6 (0.02)
Passed bias filter:                      365  (0.0203581); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.49u 0.19s 00:00:00.68 Elapsed: 00:00:00.37
# Mc/sec: 3122.55
//
Query:       KOO23694.1  [L=504]
Description: hypothetical protein Ctob_009057, partial [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.7e-08   34.0   7.0    8.9e-07   28.4   4.7    2.4  2  APG17       Autophagy protein Apg17
  ------ inclusion threshold ------
       0.39    9.5   1.2        0.8    8.5   1.2    1.4  1  Fmp27_WPPW  RNA pol II promoter Fmp27 protein domain


Domain annotation for each model (and alignments):
>> APG17  Autophagy protein Apg17
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.5   0.0   0.00087       7.8      38     161 ..     104     232 ..      81     249 .. 0.74
   2 !   28.4   4.7   9.9e-11   8.9e-07     271     387 ..     344     452 ..     254     456 .. 0.80

  Alignments for each domain:
  == domain 1  score: 5.5 bits;  conditional E-value: 0.00087
                 HHHHHHHHHHHHHHHHHHHHIIIIIIIIIIIIIIIIIHHHHHHHHHHHHHHHHHHHHHTSS-TTS..........STGGGCS--TTTTHHHHHHHHHHH CS
       APG17  38 lakteflrdglkqQlkllekirkslerklekgkeefkdlikeldaanerLektlekLrktkvepsfrpegee...ktLlDFvdedsveelkealkesid 133
                 l++++   d+ +   + l++++++l +++ + k++ ++l+ +  a  ++ e+ ++ Lr+++v++++ + +      tLlD   e+   +  ++ ++ +d
  KOO23694.1 104 LHELTVQGDAQRVAAANLHSFAQQLADRYVDFKQQCASLVPQQAALVASFEADVAALRSIEVDEAVCRLE-GwshATLLDACGEERLRAWLRECNQTTD 201
                 55555555555556667778888888889999999999999999999999999999******99977666.4578999998888888888888888888 PP

                 HHHHHHHHHHTTHH..HHHHHHHHHHH...- CS
       APG17 134 elqaaqkkldssllefdtdlrelkkel...s 161
                 +l a ++++ +   e+++ +++l++ +   s
  KOO23694.1 202 HLVAKHAQFAQAYVELQEGVAALQEGVmrrS 232
                 8888899999888889988988888875431 PP

  == domain 2  score: 28.4 bits;  conditional E-value: 9.9e-11
                 HHHHHHHHHHHHH....HHHHHHHHHHHHHHHHHH...HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
       APG17 271 llsalkkaleeleevgkklpeylaifkaeeeflerweeekekieekleeleeLrefYegFlsaYdklllEveRRraveekmekilkkarekLeklqeed 369
                  ++a ++++++l+ v ++l++ +a   + ++ l+ + +  +++  ++e+l  +r       s Y + l Ev  R++v+e+ ++ ++++ e++++ +e++
  KOO23694.1 344 KHEASVQLYTRLR-VISQLQSSIA---ELRNRLQLYGTLLARVRMYCEQLHLMRRL----PSTYLACLEEVITRQRVQEATNAQIRRTAETVAAAREQE 434
                 3455555555555.4456777777...66666666666777777777777666655....6778889******************************** PP

                 HHHHHHHHHHSSSSSBGG CS
       APG17 370 rerReeFlaevGefLPed 387
                  +rR eF++e+G  LP+ 
  KOO23694.1 435 AQRRDEFMREHGVLLPRG 452
                 ****************85 PP

>> Fmp27_WPPW  RNA pol II promoter Fmp27 protein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.5   1.2   8.9e-05       0.8     178     259 ..     324     426 ..     314     446 .. 0.73

  Alignments for each domain:
  == domain 1  score: 8.5 bits;  conditional E-value: 8.9e-05
  Fmp27_WPPW 178 eRleeleeqiekleekleelelksekedeelkeeieelekeikelkeklefletlledlkeseesse.....................eeeskskelsa 255
                  Rl+el++q+++ ++ l+ ++++ + +  +  + i++l++ i+el+++l++  tll +++  +e+ +                      +e ++ +  +
  KOO23694.1 324 PRLRELDAQLRDAQDVLSAAKHEASVQLYTRLRVISQLQSSIAELRNRLQLYGTLLARVRMYCEQLHlmrrlpstylacleevitrqrVQEATNAQIRR 422
                 69************************86777788999**********************9999976689999999999987777654422222222222 PP

  Fmp27_WPPW 256 asts 259
                 ++++
  KOO23694.1 423 TAET 426
                 2222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (504 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1096  (0.06113); expected 358.6 (0.02)
Passed bias filter:                      543  (0.0302861); expected 358.6 (0.02)
Passed Vit filter:                        49  (0.002733); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.60u 0.28s 00:00:00.88 Elapsed: 00:00:00.44
# Mc/sec: 3458.86
//
Query:       KOO23695.1  [L=363]
Description: methyltransferase nsun5-like protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    5.7e-22   78.3   0.1    1.8e-21   76.7   0.1    1.7  1  Methyltr_RsmB-F  16S rRNA methyltransferase RsmB/F
    0.00032   20.0   0.0    0.00063   19.1   0.0    1.5  1  EF-hand_1        EF hand
     0.0016   17.9   0.1     0.0031   16.9   0.1    1.5  1  EF-hand_5        EF hand
     0.0072   16.7   0.0      0.012   16.0   0.0    1.4  1  EF-hand_7        EF-hand domain pair
     0.0078   16.1   0.0       0.02   14.8   0.0    1.7  1  EF-hand_6        EF-hand domain
  ------ inclusion threshold ------
      0.071   13.8   0.1       0.22   12.3   0.1    1.9  1  Methyltransf_25  Methyltransferase domain


Domain annotation for each model (and alignments):
>> Methyltr_RsmB-F  16S rRNA methyltransferase RsmB/F
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   76.7   0.1   5.9e-25   1.8e-21       3     156 ..     187     349 ..     185     357 .. 0.83

  Alignments for each domain:
  == domain 1  score: 76.7 bits;  conditional E-value: 5.9e-25
                      HH---TT-EEEESS-TTSHHHHHHHHHTTTTSEEEEEESSCCCHHHHHHHHHHTT--SEEEEES-CTCCHHHHCC...EEEEEEEE--CCGGGT CS
  Methyltr_RsmB-F   3 lLapqeeetilDlcaaPGgKTthiaelmknkgtvvAvdankeRlkrvaenlkrLgvtntivleaDarkidkvlgg.elfDriLlDaPCsgtgvi 95 
                      +Lap+++e ilD caaPG KTt +a+l +++g v+A +++++R+  + +   +     + v++ D   id   +    +  + lD  Csg g++
       KOO23695.1 187 ALAPRPGELILDCCAAPGNKTTQLAALSAPNGLVIACERDARRAGVLRARAAQAAGSAIRVMQIDFLSIDVKESPyCDVTAVQLDPTCSGSGMV 280
                      89*********************************************99999888888********999876665466889************* PP

                      TT-.....T....CHHHH--HHHHHHHHHHHHHHHHHHCCCEEEEEEEEEEES--STTTTHHHHHHHHHH CS
  Methyltr_RsmB-F  96 rrd.....p....dvklrrkekdiaqlaklqkellsaaidllkkgGvlvYsTCsvlveEneevieeaLkk 156
                      +r      p    ++    + + +a+l   q el+  a+   k+  v+vYsTCsv++ E+e v+ +aL++
       KOO23695.1 281 ERAgfqlaPeggaAAVDGGQAERLAALGAMQLELVLHALSFPKA-RVVVYSTCSVHPVEDELVVRAALRA 349
                      *9633333211111222345667888888899998888877776.699********************97 PP

>> EF-hand_1  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.1   0.0   2.1e-07   0.00063       5      25 ..      73      93 ..      69      96 .. 0.86

  Alignments for each domain:
  == domain 1  score: 19.1 bits;  conditional E-value: 2.1e-07
                HHHHHTTTSSSEEEHHHHHHH CS
   EF-hand_1  5 iFrefDkDgdGkIdfeEfkel 25
                 F ++Dk+ dGk++++Ef+++
  KOO23695.1 73 EFTKADKNADGKLSYKEFRAW 93
                599***************987 PP

>> EF-hand_5  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   0.1   1.1e-06    0.0031       5      22 ..      74      91 ..      70      92 .. 0.91

  Alignments for each domain:
  == domain 1  score: 16.9 bits;  conditional E-value: 1.1e-06
                HHHH-SS-SSCE-HHHHH CS
   EF-hand_5  5 FqaiDlNgDGkIskeELk 22
                F ++D+N DGk+s  E++
  KOO23695.1 74 FTKADKNADGKLSYKEFR 91
                889**************8 PP

>> EF-hand_7  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.0     4e-06     0.012      44      70 ..      68      94 ..      33      95 .. 0.88

  Alignments for each domain:
  == domain 1  score: 16.0 bits;  conditional E-value: 4e-06
   EF-hand_7 44 eelellfkefDtdkdGvisfdEFlkly 70
                 ele  f + D++ dG++s+ EF+++ 
  KOO23695.1 68 AELEGEFTKADKNADGKLSYKEFRAWA 94
                578889999***************986 PP

>> EF-hand_6  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.0   6.7e-06      0.02       6      25 ..      74      93 ..      69      97 .. 0.90

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 6.7e-06
   EF-hand_6  6 FklfDkdgdGkidaeElrka 25
                F + Dk+ dGk++++E+r++
  KOO23695.1 74 FTKADKNADGKLSYKEFRAW 93
                9999*************987 PP

>> Methyltransf_25  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.1   7.2e-05      0.22       1      65 [.     196     262 ..     196     281 .. 0.85

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 7.2e-05
                      EEEET-TTSHHHHHHHCTS.TSSEEEEEESSHHHHHHHHHHHHH.TTTTEEEEESBCCGBSSSTTTE CS
  Methyltransf_25   1 vLdlGcGtGrltlalakrl.gkakvtgvDiseemleaareraee.eglnvefvqgdaedlpfedgsf 65 
                      +Ld+++ +G+ t +la+   +++ v++++ +++     r+ra++ +g  ++++q d+ +++ +++ +
       KOO23695.1 196 ILDCCAAPGNKTTQLAALSaPNGLVIACERDARRAGVLRARAAQaAGSAIRVMQIDFLSIDVKESPY 262
                      8***************998669*****************9998845559999999999988776654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (363 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       365  (0.0203581); expected 358.6 (0.02)
Passed bias filter:                      290  (0.0161749); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.52u 0.22s 00:00:00.74 Elapsed: 00:00:00.44
# Mc/sec: 2491.52
//
Query:       KOO23696.1  [L=171]
Description: hypothetical protein Ctob_009055 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
     0.0047   17.3   0.4       0.35   11.3   0.1    2.4  2  Ribosomal_S13    Ribosomal protein S13/S18
     0.0056   17.1   9.9       0.92   10.0   0.9    3.1  3  Wbp11            WW domain binding protein 11
     0.0056   16.5   1.5          4    7.4   0.1    3.2  3  CsbD             CsbD-like
  ------ inclusion threshold ------
      0.031   14.4  12.7        1.5    9.0   0.5    3.1  3  Caudo_TAP        Caudovirales tail fibre assembly protein, la
      0.045   13.6   9.8       0.97    9.3   0.2    3.1  3  DUF896           Bacterial protein of unknown function (DUF89
       0.34   10.9   1.5        2.5    8.1   0.1    2.3  3  PgaD             PgaD-like protein
        2.1    9.0   4.5         56    4.4   0.6    3.0  3  HTH_32           Homeodomain-like domain
        2.4    8.3   8.2        1.6    8.8   0.3    3.3  4  PspB             Phage shock protein B
        5.5    7.2   6.4         21    5.3   6.4    1.9  1  Gluconate_2-dh3  Gluconate 2-dehydrogenase subunit 3


Domain annotation for each model (and alignments):
>> Ribosomal_S13  Ribosomal protein S13/S18
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.4   0.0     0.023        46      32      58 ..      21      47 ..      11      57 .. 0.82
   2 !   11.3   0.1   0.00018      0.35      34      99 ..      58     122 ..      46     134 .. 0.77

  Alignments for each domain:
  == domain 1  score: 4.4 bits;  conditional E-value: 0.023
  Ribosomal_S13 32 lkkadvdedkrigelteeeiekieeiv 58
                   ++ ad++++  +gelt+ e+ ++ ++ 
     KOO23696.1 21 ARMADLQRREAAGELTDAELAELAQLS 47
                   46799****************998865 PP

  == domain 2  score: 11.3 bits;  conditional E-value: 0.00018
  Ribosomal_S13  34 kadvdedkrigelteeeiekieeivenkaqykipnwi.nrqkdikdGkdshvvendlrrklredieR 99 
                     ad++++  +gelt+ e+ ++ +++    +  + + i +r+k  +d +d       l  ++ +d++R
     KOO23696.1  58 IADLQRREATGELTDAELAELAQLITTSSHAGSAAAIdDRNKPRFDADDAEA--AVLMDERIADLKR 122
                    48999**********************9999999999899998887766543..3344455555555 PP

>> Wbp11  WW domain binding protein 11
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.9   0.1    0.0086        17      44      75 ..      21      52 ..      17      55 .. 0.87
   2 !    6.8   0.2    0.0044       8.8      43      71 ..      55      83 ..      51      87 .. 0.89
   3 !   10.0   0.9   0.00046      0.92      43      72 ..     114     143 ..     108     148 .. 0.91

  Alignments for each domain:
  == domain 1  score: 5.9 bits;  conditional E-value: 0.0086
       Wbp11 44 eeiekLeelessgkldaadkkklekLekelka 75
                  +++L++ e++g+l++a+  +l++L ++  a
  KOO23696.1 21 ARMADLQRREAAGELTDAELAELAQLSATAVA 52
                57899*********************987655 PP

  == domain 2  score: 6.8 bits;  conditional E-value: 0.0044
       Wbp11 43 eeeiekLeelessgkldaadkkklekLek 71
                 e i++L++ e++g+l++a+  +l++L +
  KOO23696.1 55 DERIADLQRREATGELTDAELAELAQLIT 83
                689*********************99965 PP

  == domain 3  score: 10.0 bits;  conditional E-value: 0.00046
       Wbp11  43 eeeiekLeelessgkldaadkkklekLeke 72 
                  e i++L++ e++g+l+ +++ +l++Le++
  KOO23696.1 114 DERIADLKRREAAGELTGEERLQLAELEQK 143
                 689*************************97 PP

>> CsbD  CsbD-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.1   0.0     0.021        43      15      28 ..      29      42 ..      27      44 .. 0.85
   2 ?    2.7   0.0     0.058   1.2e+02      15      28 ..      64      77 ..      62      79 .. 0.85
   3 !    7.4   0.1     0.002         4      15      28 ..     123     136 ..     121     138 .. 0.88

  Alignments for each domain:
  == domain 1  score: 4.1 bits;  conditional E-value: 0.021
        CsbD 15 KeaaGkaTgdekle 28
                +eaaG++T+ e  e
  KOO23696.1 29 REAAGELTDAELAE 42
                69*******98766 PP

  == domain 2  score: 2.7 bits;  conditional E-value: 0.058
        CsbD 15 KeaaGkaTgdekle 28
                +ea G++T+ e  e
  KOO23696.1 64 REATGELTDAELAE 77
                69*******98766 PP

  == domain 3  score: 7.4 bits;  conditional E-value: 0.002
        CsbD  15 KeaaGkaTgdekle 28 
                 +eaaG++Tg e+l+
  KOO23696.1 123 REAAGELTGEERLQ 136
                 79**********99 PP

>> Caudo_TAP  Caudovirales tail fibre assembly protein, lambda gpK
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.7   0.5    0.0019       3.8      79     105 ..      20      46 ..      13      54 .. 0.88
   2 ?    9.0   0.5   0.00075       1.5      79     104 ..      55      80 ..      49      83 .. 0.91
   3 ?    5.4   0.7    0.0099        20      79     106 ..     114     141 ..     103     143 .. 0.92

  Alignments for each domain:
  == domain 1  score: 7.7 bits;  conditional E-value: 0.0019
   Caudo_TAP  79 seqiaplqdavdlgiatdeEkaaLlaw 105
                 ++++a+lq+  + g++td+E a+L+++
  KOO23696.1  20 DARMADLQRREAAGELTDAELAELAQL 46 
                 6789********************987 PP

  == domain 2  score: 9.0 bits;  conditional E-value: 0.00075
   Caudo_TAP  79 seqiaplqdavdlgiatdeEkaaLla 104
                 +e+ia+lq+  ++g++td+E a+L++
  KOO23696.1  55 DERIADLQRREATGELTDAELAELAQ 80 
                 689*********************87 PP

  == domain 3  score: 5.4 bits;  conditional E-value: 0.0099
   Caudo_TAP  79 seqiaplqdavdlgiatdeEkaaLlawk 106
                 +e+ia+l++  + g++t eE+ +L+++ 
  KOO23696.1 114 DERIADLKRREAAGELTGEERLQLAELE 141
                 689*********************9985 PP

>> DUF896  Bacterial protein of unknown function (DUF896)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.1   0.1      0.01        20       5      29 ..      22      46 ..      20      49 .. 0.87
   2 ?    9.3   0.2   0.00049      0.97       4      29 ..      56      81 ..      54      84 .. 0.93
   3 ?    3.8   1.3     0.027        53       4      31 ..     115     142 ..     113     144 .. 0.87

  Alignments for each domain:
  == domain 1  score: 5.1 bits;  conditional E-value: 0.01
      DUF896  5 RINeLakkkktegLTeeEkeeqkkL 29
                R   L +++ + +LT++E +e ++L
  KOO23696.1 22 RMADLQRREAAGELTDAELAELAQL 46
                77789999999**********8887 PP

  == domain 2  score: 9.3 bits;  conditional E-value: 0.00049
      DUF896  4 eRINeLakkkktegLTeeEkeeqkkL 29
                eRI  L +++ t +LT++E +e ++L
  KOO23696.1 56 ERIADLQRREATGELTDAELAELAQL 81
                7********************98877 PP

  == domain 3  score: 3.8 bits;  conditional E-value: 0.027
      DUF896   4 eRINeLakkkktegLTeeEkeeqkkLRk 31 
                 eRI  L +++ + +LT eE  + ++L +
  KOO23696.1 115 ERIADLKRREAAGELTGEERLQLAELEQ 142
                 79*****************987777765 PP

>> PgaD  PgaD-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.1   0.1    0.0013       2.5      94     131 ..      17      54 ..      13      59 .. 0.87
   2 ?    2.2   0.0     0.086   1.7e+02      99     129 ..      57      87 ..      53      94 .. 0.81
   3 ?   -3.2   0.0       3.9   7.8e+03     101     124 ..     118     141 ..     111     148 .. 0.54

  Alignments for each domain:
  == domain 1  score: 8.1 bits;  conditional E-value: 0.0013
        PgaD  94 klnrvrfkakkrrvkapalddeelAkhfklseqqlael 131
                 ++   r+++ +rr +a +l+d+elA+ ++ls + +a +
  KOO23696.1  17 AVMDARMADLQRREAAGELTDAELAELAQLSATAVAIM 54 
                 56678999***********************9998765 PP

  == domain 2  score: 2.2 bits;  conditional E-value: 0.086
        PgaD  99 rfkakkrrvkapalddeelAkhfklseqqla 129
                 r ++ +rr +  +l+d+elA+ ++l  ++ +
  KOO23696.1  57 RIADLQRREATGELTDAELAELAQLITTSSH 87 
                 6788889999999********9999777655 PP

  == domain 3  score: -3.2 bits;  conditional E-value: 3.9
        PgaD 101 kakkrrvkapalddeelAkhfkls 124
                 ++ krr +a +l+ ee  + ++l+
  KOO23696.1 118 ADLKRREAAGELTGEERLQLAELE 141
                 455555555555554444444444 PP

>> HTH_32  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.5   0.3      0.47   9.4e+02      19      41 ..      25      47 ..      12      65 .. 0.73
   2 ?    4.1   0.0     0.036        72      17      44 ..      58      85 ..      52      99 .. 0.76
   3 ?    4.4   0.6     0.028        56      17      49 ..     117     148 ..      97     154 .. 0.73

  Alignments for each domain:
  == domain 1  score: 0.5 bits;  conditional E-value: 0.47
      HTH_32 19 drprrgrprklsdevrariiall 41
                d +rr +   l+d++ a++ +l 
  KOO23696.1 25 DLQRREAAGELTDAELAELAQLS 47
                44455555578888888888875 PP

  == domain 2  score: 4.1 bits;  conditional E-value: 0.036
      HTH_32 17 Lkdrprrgrprklsdevrariiallree 44
                ++d +rr ++  l+d++ a++ +l+++ 
  KOO23696.1 58 IADLQRREATGELTDAELAELAQLITTS 85
                556667777778************9544 PP

  == domain 3  score: 4.4 bits;  conditional E-value: 0.028
      HTH_32  17 LkdrprrgrprklsdevrariiallreeprWsp 49 
                 ++d +rr +   l+ e+r ++ +l  ++ +W++
  KOO23696.1 117 IADLKRREAAGELTGEERLQLAELE-QKKEWHM 148
                 345566666668************9.6668975 PP

>> PspB  Phage shock protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.8   0.3   0.00083       1.6      27      60 ..      27      61 ..      25      63 .. 0.86
   2 ?    1.9   0.1      0.11   2.3e+02      27      50 ..      62      85 ..      60      89 .. 0.86
   3 ?   -1.6   0.0       1.5     3e+03      48      60 ..     108     120 ..     104     123 .. 0.78
   4 ?    0.9   0.2      0.24   4.7e+02      28      49 ..     122     143 ..     119     148 .. 0.85

  Alignments for each domain:
  == domain 1  score: 8.8 bits;  conditional E-value: 0.00083
        PspB 27 skkkrskglsaedekrLeellekAek.leeRietL 60
                ++++++ +l++ +  +L++l+ +A   ++eRi  L
  KOO23696.1 27 QRREAAGELTDAELAELAQLSATAVAiMDERIADL 61
                57888999***************9654999*9877 PP

  == domain 2  score: 1.9 bits;  conditional E-value: 0.11
        PspB 27 skkkrskglsaedekrLeellekA 50
                +++++  +l++ +  +L++l+ ++
  KOO23696.1 62 QRREATGELTDAELAELAQLITTS 85
                57788899************9876 PP

  == domain 3  score: -1.6 bits;  conditional E-value: 1.5
        PspB  48 ekAekleeRietL 60 
                 e A  ++eRi  L
  KOO23696.1 108 EAAVLMDERIADL 120
                 6677899999876 PP

  == domain 4  score: 0.9 bits;  conditional E-value: 0.24
        PspB  28 kkkrskglsaedekrLeellek 49 
                 +++++ +l+ e++ +L+el +k
  KOO23696.1 122 RREAAGELTGEERLQLAELEQK 143
                 6788899***********9876 PP

>> Gluconate_2-dh3  Gluconate 2-dehydrogenase subunit 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.3   6.4     0.011        21      22      89 ..       8      79 ..       2     154 .. 0.79

  Alignments for each domain:
  == domain 1  score: 5.3 bits;  conditional E-value: 0.011
  Gluconate_2-dh3 22 pgakeagvaafidrqladaplppeqeayrkg....laaldayaraeygksFveldgaqqdalLealekeaea 89
                       a ea +aa++d ++ad    +++  ++++    la+l+a a a  +++ ++l+  + +  L+++e  + a
       KOO23696.1  8 FDAGEAAIAAVMDARMADLQRREAAGELTDAelaeLAQLSATAVAIMDERIADLQRREATGELTDAELAELA 79
                     5799**************766666666666566669999999999999999999999999888888776555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (171 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       575  (0.0320709); expected 358.6 (0.02)
Passed bias filter:                      284  (0.0158403); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                        13  (0.000725082); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.46u 0.25s 00:00:00.71 Elapsed: 00:00:00.43
# Mc/sec: 1205.77
//
Query:       KOO23697.1  [L=682]
Description: flagellar associated protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        0.5    8.4  13.4       0.77    7.8  13.4    1.2  1  AF-4       AF-4 proto-oncoprotein
        1.3    8.7  20.2        2.2    7.9  20.2    1.3  1  BSP_II     Bone sialoprotein II (BSP-II)
        5.4    6.6   6.3    1.1e+02    2.3   5.3    2.5  3  CiPC       Clock interacting protein circadian


Domain annotation for each model (and alignments):
>> AF-4  AF-4 proto-oncoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.8  13.4   0.00013      0.77     475     619 ..      47     181 ..      21     208 .. 0.62

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 0.00013
        AF-4 475 sSeSeSSSeSDSesEssssdseanepprtatpepeppatnkWqLdnwlnkvnqlassqeessaessseteesesp.kkeskeqsqgkskssssevvees 572
                    S+ S  SD   Esss +s+++e+ + a pepep  +   +++  ++ v ++a+++e     ++ ++ + +++   e+ ++ +  +k   +++v+e+
  KOO23697.1  47 DATSDGSYFSDDSYESSSEESSEEEEEEEAEPEPEPEPE---EIEAEVTEVAEVAAPEEGEAPVTALKAGAASTKaVFEKPNPVE--KKVVPRKAVAEP 140
                 55789999999999*******999999999999999765...5777788888888888886655555554433330233333333..444455555545 PP

        AF-4 573 seskpkakskaeqkkseekqdkrskqkspaqkeseepntrktvgkkq 619
                 +++++ ++++ ++ ++ +     sk k  a   +ee+  +k+++k q
  KOO23697.1 141 EPKEEDEEEESAEVGPTAG---ASKPKKLA---KEEKAAEKEAAKLQ 181
                 5544444444444444333...33333332...22222223333322 PP

>> BSP_II  Bone sialoprotein II (BSP-II)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.9  20.2   0.00037       2.2      48     155 ..      56     154 ..      40     205 .. 0.62

  Alignments for each domain:
  == domain 1  score: 7.9 bits;  conditional E-value: 0.00037
      BSP_II  48 sdsseEngdGdsseEeeeeeetsneeenneesnenedeeseaenttlsatt.pgygeektqgkgsiGlaaik.lpkkagdieekatkeeesdeeeeeee 144
                 sd s E    +sseEeeeee+            e e ee eae t+++    p++ge  +  + + G a+ k + +k + +e+k   ++   e e +ee
  KOO23697.1  56 SDDSYESSSEESSEEEEEEEAEP--------EPEPEPEEIEAEVTEVAEVAaPEEGEAPV-TALKAGAASTKaVFEKPNPVEKKVVPRKAVAEPEPKEE 145
                 33344433334444444444432........23455666677666666554144555443.44455544444144566667777776666666666666 PP

      BSP_II 145 eeeneeeeaev 155
                   ++eee aev
  KOO23697.1 146 --DEEEESAEV 154
                 ..333333444 PP

>> CiPC  Clock interacting protein circadian
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.3   5.3     0.019   1.1e+02     140     271 ..      57     188 ..      32     212 .. 0.73
   2 ?   -2.0   0.1      0.38   2.3e+03     200     259 ..     337     398 ..     316     458 .. 0.55
   3 ?    2.1   0.0     0.021   1.3e+02       3      30 ..     588     614 ..     587     639 .. 0.85

  Alignments for each domain:
  == domain 1  score: 2.3 bits;  conditional E-value: 0.019
        CiPC 140 ssslsaserssshssskrvcterkkeklsessasstsesssatpekealpsspstssplsaklasesaretsssllatpaserpssssselslssasls 238
                 ++s ++s ++ss+++++ +   + + +  e +a+ t+ ++ a+pe+ + p +  +    s+k++ e+ +  + +++  +a+ +p+ +  + + +sa++ 
  KOO23697.1  57 DDSYESSSEESSEEEEEEEAEPEPEPEPEEIEAEVTEVAEVAAPEEGEAPVTALKAGAASTKAVFEKPNPVEKKVVPRKAVAEPEPKEEDEEEESAEVG 155
                 455555555566556666666666666667777777778888999999999988888888888888888888888888899999999999999999999 PP

        CiPC 239 ssataskasalssaspassessskdaekgpesk 271
                 ++a ask+++l++++ a +++ +k +++++  +
  KOO23697.1 156 PTAGASKPKKLAKEEKAAEKEAAKLQRREARRA 188
                 999999999999998888887777666554443 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 0.38
        CiPC 200 aklasesaretsssllatpaserpssssselslssaslss..sataskasalssaspasses 259
                 ++++++++++t+ +    +++ +ps++ +e+ l s ++ +   +++s  ++l+++ ++sse+
  KOO23697.1 337 TEMVHKEMKKTEKERNPLGKRASPSQKGAEVGLVSGEADAgaGNRPSGRPGLARQTTMSSEA 398
                 33444444444444444444444444444444444333320022333344444444444443 PP

  == domain 3  score: 2.1 bits;  conditional E-value: 0.021
        CiPC   3 kDSGfSDasSeslSaldqtdaeDvqstl 30 
                 kD G+ Da+S    ++ +td e  ++ l
  KOO23697.1 588 KDAGYTDAGSFFY-NMRKTDEEGYKRLL 614
                 8*********877.9*****99877655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (682 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       916  (0.0510904); expected 358.6 (0.02)
Passed bias filter:                      448  (0.0249875); expected 358.6 (0.02)
Passed Vit filter:                        51  (0.00284455); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.71u 0.28s 00:00:00.99 Elapsed: 00:00:00.43
# Mc/sec: 4725.84
//
Query:       KOO23698.1  [L=418]
Description: hypothetical protein Ctob_009053 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    6.5e-08   32.4   0.0    1.8e-07   30.9   0.0    1.7  1  Exo_endo_phos  Endonuclease/Exonuclease/phosphatase family
  ------ inclusion threshold ------
       0.14   12.6   0.2       0.14   12.6   0.2    3.4  4  TilS           TilS substrate binding domain


Domain annotation for each model (and alignments):
>> Exo_endo_phos  Endonuclease/Exonuclease/phosphatase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.9   0.0     2e-11   1.8e-07      15     223 ..      59     367 ..      21     381 .. 0.68

  Alignments for each domain:
  == domain 1  score: 30.9 bits;  conditional E-value: 2e-11
                    HHHHHHHHHHHHHHCTTSEEEEEEEBSCTCHHHHHHHHHTTCEEEEECCH....................ECSSSTTSSEEEEEECSTE...EEEE CS
                    xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx....................xxxxxxxxxxxxxxxxxxx...xxxx RF
  Exo_endo_phos  15 ssrrsdrladlltaydaDvlgLQEvdddelsriplllalggflgasstsp....................tgggggggnggavlsrfpl...tslf 87 
                     srr + l+++l a  aD+++LQEv+   +++        + l+++ + +                    ++   ++  g a+l+r         +
     KOO23698.1  59 ESRRPA-LLAELVAAEADIVCLQEVQFERRADG------VHELPGWLRLSgyeyvipaqeqmaqmaarnaRVLRSCTAIGNALLYRTDRlmdVDAK 147
                    345555.555555678********777765555......444444444445555666788889999999989999999999999999998865555 PP

                    EEEEEETSSSSGCEEEEEEEEEEEEEEE...CCCHHGHHHHHHHHHHHHHHHHHHHHHTTSEEEEEEE-SSSTSGGGBSCGHHHHHHCTTTH.... CS
                    xxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.... RF
  Exo_endo_phos  88 rrtfiefndlvaalrreplaakleqlni...ashrdhdlvrdlqllalllqvealnadrgapvivaGDfNarpsdddsrvlrtrglalapap.... 176
                        + + +  ++lr +p +a ++         h d      + +++ +    a   + ++ v++aGD+N+    ++      +g+++  ++    
     KOO23698.1 148 KPRADATTRVCMCLRGRPATALEPLGPLavfSVHLDATKETTRVKQLSKCVEMAVDTFGTRAVLIAGDMNSELARGSCVAALVGGAHDGTVAaptq 243
                    55555555555555555555555555558888888888888888888888888888888888999******9999999999999999888777777 PP

                    ...........................H........SSCESCETTTTTTTTTTTEB-B...................................... CS
                    ...........................x........xxxxxxxxxxxxxxxxxxxxxx...................................... RF
  Exo_endo_phos 177 ...........................v........glyllgggptptyvtraggsrl...................................... 199
                                               +        +  + gg+p pt+     ++ l                                      
     KOO23698.1 244 aelqrecasalrlstddgaaeddsdtrGddaeaaspAEGGGGGSPMPTAEQMQAWQQLydaaqrvpraqrvrlervptgatraayahgamvgpcel 339
                    777776666666655555555444444044555555444444444444444444444466666666666666677777777777777777777777 PP

                    ...EEEEEEC.HHHCCEEEEEEECCHHE CS
                    ...xxxxxxx.xxxxxxxxxxxxxxxxx RF
  Exo_endo_phos 200 ...Drilasp.alalfrsgvlppplalv 223
                       D+il+sp al+l   ++ ++ ++  
     KOO23698.1 340 wklDHILYSPrALTLSQHWSTLEAAPEA 367
                    777*******999988888777766554 PP

>> TilS  TilS substrate binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.2   0.0      0.16   1.5e+03      21      39 ..      97     117 ..      94     147 .. 0.73
   2 ?   -2.9   0.0       1.1   9.9e+03      27      37 ..     238     248 ..     233     263 .. 0.67
   3 ?   12.6   0.2   1.6e-05      0.14      26      48 ..     286     307 ..     282     318 .. 0.83
   4 ?   -1.2   0.1      0.33   2.9e+03      27      49 ..     346     367 ..     339     369 .. 0.77

  Alignments for each domain:
  == domain 1  score: -0.2 bits;  conditional E-value: 0.16
                 HHHHTT..TT--HHHHHHH.H CS
        TilS  21 WLaqlg..lpmpsaahLeell 39 
                 WL+ +g     p ++++++++
  KOO23698.1  97 WLRLSGyeYVIPAQEQMAQMA 117
                 777777664477777777753 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 1.1
                 TT--HHHHHHH CS
        TilS  27 lpmpsaahLee 37 
                 + +p++a L++
  KOO23698.1 238 VAAPTQAELQR 248
                 56789998887 PP

  == domain 3  score: 12.6 bits;  conditional E-value: 1.6e-05
                 TTT--HHHHHHH.HHHHH.H-S- CS
        TilS  26 glpmpsaahLeellrqlllaaed 48 
                 g pmp+a+++++ ++ql +aa++
  KOO23698.1 286 GSPMPTAEQMQA-WQQLYDAAQR 307
                 589*********.*****76654 PP

  == domain 4  score: -1.2 bits;  conditional E-value: 0.33
                 TT--HHHHHHH.HHHHH.H-S-S CS
        TilS  27 lpmpsaahLeellrqlllaaeda 49 
                 l +p a+ L +++  l  aa+ a
  KOO23698.1 346 LYSPRALTLSQHWSTLE-AAPEA 367
                 568999999****9998.77765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (418 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       462  (0.0257683); expected 358.6 (0.02)
Passed bias filter:                      355  (0.0198003); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.51u 0.25s 00:00:00.76 Elapsed: 00:00:00.42
# Mc/sec: 2979.96
//
Query:       KOO23699.1  [L=605]
Description: snf2 super family [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.6e-27   94.4   0.0    8.6e-21   74.0   0.0    2.2  2  SNF2_N      SNF2 family N-terminal domain
    1.9e-12   47.5   0.0    3.1e-12   46.8   0.0    1.3  1  Helicase_C  Helicase conserved C-terminal domain
     0.0002   21.4   0.0     0.0003   20.8   0.0    1.2  1  ResIII      Type III restriction enzyme, res subunit
  ------ inclusion threshold ------
      0.011   15.6   0.0      0.022   14.5   0.0    1.4  1  DEAD        DEAD/DEAH box helicase


Domain annotation for each model (and alignments):
>> SNF2_N  SNF2 family N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   74.0   0.0   1.9e-24   8.6e-21      51     197 ..      61     186 ..      50     193 .. 0.88
   2 !   18.7   0.0   1.3e-07   0.00057     278     349 ..     193     251 ..     185     252 .. 0.78

  Alignments for each domain:
  == domain 1  score: 74.0 bits;  conditional E-value: 1.9e-24
                 HHHTT--EEE---TTS--HHHHHHHHH...HHTTTS---.......S-EEEE--HHHHHHHHHHHHHH-TTS-EEE--SSHHHH--------------- CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
      SNF2_N  51 akqsvrGGiLaDemGLGKTvqvlalilaqrakeekdkekkrkdtlagptLivvPaslldqWeneierhvsssalrvlvyggqkkmkkkntkvapkllad 149
                 +++  r GiLaDemGLGKT q++a+++ +           r + ++gp+L+++P s+l  W ++++++++s ++ +++++       ++  v +  l +
  KOO23699.1  61 LHACGRSGILADEMGLGKTAQAIAMLALL-----------RSRGVSGPFLVIAPLSTLSGWLEQLRSFCPSLHVAMYTGSAT-----ERAAVRRGPLSA 143
                 5677899********************32...........346789**************************9987777775.....456788999*** PP

                 --EEEE-HHHHHHHT......TTS-S-S-SEEEES-GGGT--TTSHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
      SNF2_N 150 ydvvittYdvlsreaelqkkrsvlkqvewkrvvlDEghtlknstskaa 197
                   v++ +Y+ +  +a     +  + + +  + vlDE+h+lk+ +s ++
  KOO23699.1 144 SSVLLASYEPVLADA-----PALVASCRFGYAVLDEAHRLKSRASAVY 186
                 ************888.....9*********************988776 PP

  == domain 2  score: 18.7 bits;  conditional E-value: 1.3e-07
                 -S---EEEEEEEEE--HHHHHHHH....................HHHHHH-HH.H-HHHHHHHHHHHHH---X CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxx RF
      SNF2_N 278 knlPpkteeiiflklskverksYnrllevlrkkalakllkrseaalksssksk.ekilelllelrqacnhpql 349
                   lPpk e +i++++++ +r++Y              +l++++ al  +   +   +++ l  lr++cnhp+l
  KOO23699.1 193 LHLPPKREVTIRVPMTSLQRHWYR------------AVLEKNRRALGGGA--NaRSLVNVLAALRKCCNHPYL 251
                 68**********************............45555555555555..32458899***********98 PP

>> Helicase_C  Helicase conserved C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.8   0.0     7e-16   3.1e-12       2     111 .]     272     403 ..     271     403 .. 0.91

  Alignments for each domain:
  == domain 1  score: 46.8 bits;  conditional E-value: 7e-16
                 HHHHHHHHH.HHTTTTSEEEEEESSHHHHHH.HHHHHHHTTSTEEEESTTSTHHHHHHHHHHHHTTS......................SSEEEESGGG CS
  Helicase_C   2 kleallell.kleeeggkilifvntidrlek.vklllekkgikvavlhgelpqnereeileqfnkge......................sdvLiatdva 76 
                 kl++l +ll  l  +g ++l+f++++ +l+   ++l + +   + +l+g+  ++er +++++f +g                       + +L++t+++
  KOO23699.1 272 KLRMLDRLLvRLWTRGARVLLFSQSTMMLDVlQDYL-HLRRWAYERLDGSARAEERWAAVAAF-SGPvsggagggsraggggpgretepFVFLLSTRAG 368
                 77888888778899***************8866666.5557**********************.5555677899**************999******** PP

                 TSSSTSTTESEEEESSSSSSHHHHHHHHTTSSSTT CS
  Helicase_C  77 erGidipkvnlVinfdlprnvtsyiqriGRtgRag 111
                 + G+++  +n+Vi++d ++n++   q+ +R++R g
  KOO23699.1 369 GLGLNLVAANTVIFYDHDWNPQADAQATDRVHRLG 403
                 *********************************86 PP

>> ResIII  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.8   0.0   6.8e-08    0.0003      18     148 ..      60     182 ..      44     225 .. 0.80

  Alignments for each domain:
  == domain 1  score: 20.8 bits;  conditional E-value: 6.8e-08
                 .....TTSEEEEEESTTSTHHHHHHHHHHHH-S.....-EEEEESSHHHHHHHHHHGGGGTGG....GEEEESSS-B--..........-SEEEEEHHH CS
      ResIII  18 klkskrdkrglikmaTGtGKTlvaaklierllkkgkeekflflvprkslleqtleefkkflseaykeigkkvsgdkkka...kekdstnkkilvttiqs 113
                 +l+    + g+++ + G GKT  a+++ + l++ g    fl+++p  +l + +le++++f ++ + +    ++g   ++   +++  + +++l+++++ 
  KOO23699.1  60 ALH-ACGRSGILADEMGLGKTAQAIAMLALLRSRGVSGPFLVIAPLSTL-SGWLEQLRSFCPSLHVA---MYTGSATERaavRRGPLSASSVLLASYEP 153
                 554.556788999999***********99999999988******97665.89**********99644...4444444444456999************* PP

                 HHHTH........HHHTTT-SEEEEETGGGTTS.T CS
      ResIII 114 ldadseeeeeeseellrdrfdviiiDEaHrlgakk 148
                 + ad            + rf + + DEaHrl++ +
  KOO23699.1 154 VLADA------PALVASCRFGYAVLDEAHRLKSRA 182
                 *****......889999**************9863 PP

>> DEAD  DEAD/DEAH box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.5   0.0   4.9e-06     0.022      14     147 ..      65     191 ..      57     207 .. 0.67

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 4.9e-06
                 TCEEEEEESTTSSHHHHHHHHHHHHHHHSTTSTS-EEEEEESSHHHHHHHHHHHHHHTTTSTSEEEEEETTSSHHHHHHHHH.TTCSEEEEEHHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxx RF
        DEAD  14 ggdvlvaaeTGsGKTlaflipvlqivyetkgktgpkalivePtreLaeqtlnnlkkfkkyidlrvlliiggvaardqlskld.ngvdivvgtpgrlddl 111
                 g++ ++a e G GKT+  +i++l+ + +++g +g   l+++P+  L    l++l++f+    l v + +g+ ++r  +++   +   ++++  + ++  
  KOO23699.1  65 GRSGILADEMGLGKTAQ-AIAMLALL-RSRGVSG-PFLVIAPLSTLS-GWLEQLRSFCPS--LHVAMYTGSATERAAVRRGPlSASSVLLASYEPVLAD 157
                 5666788899*****87.56666455.5467776.799*******96.6899*******7..5565444544444443333224467777776666653 PP

                 HHCTSSHCTTEEEEEEETHHHHHHTTTHHHHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD 112 lstgklnlsqvrflVlDEadrlldqgfsdfinriln 147
                      +   ++ + VlDEa+rl +   s  ++  ++
  KOO23699.1 158 A-PALVASCRFGYAVLDEAHRLKSR-ASAVYRLKAE 191
                 3.22333567788*********998.5555554444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (605 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       360  (0.0200792); expected 358.6 (0.02)
Passed bias filter:                      257  (0.0143343); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.54u 0.29s 00:00:00.83 Elapsed: 00:00:00.43
# Mc/sec: 4178.97
//
Query:       KOO23700.1  [L=603]
Description: hypothetical protein Ctob_003498 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (603 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       377  (0.0210274); expected 358.6 (0.02)
Passed bias filter:                      291  (0.0162307); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.53u 0.28s 00:00:00.81 Elapsed: 00:00:00.44
# Mc/sec: 4113.72
//
Query:       KOO23701.1  [L=191]
Description: hypothetical protein Ctob_003499 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.1e-05   26.3   0.0      2e-05   25.4   0.0    1.5  1  2OG-FeII_Oxy_3  2OG-Fe(II) oxygenase superfamily


Domain annotation for each model (and alignments):
>> 2OG-FeII_Oxy_3  2OG-Fe(II) oxygenase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.4   0.0   1.1e-09     2e-05      12      83 ..      27     145 ..      17     159 .. 0.74

  Alignments for each domain:
  == domain 1  score: 25.4 bits;  conditional E-value: 1.1e-09
                     EEEE-SS----TT.-.EEEEEEEEE....ET-B--..............................................EEE..........- CS
  2OG-FeII_Oxy_3  12 ykpHvDnfekeegsgqrrltvllyLnekeseeGGe..............................................lelyekdkeavkik 60 
                        H+D++   +g   r +tvllyL+  + e+GGe                                              l   e +     i+
      KOO23701.1  27 TALHIDTN---QGGHFRAATVLLYLH--DIEHGGEtrfplvgaaegseirlaaerladlgitafspsediewpplhlrkplLDAAEAEGVGLCIQ 116
                     568***96...55578*********6..448****99999999999998888888888887776666666666655555554444444489999* PP

                     --TT-EEEEE-..B-T........EEE--B. CS
  2OG-FeII_Oxy_3  61 pkkgrlvlFesdellp........Hevlpvt 83 
                     pk+g +++F++++  p        H++ +v 
      KOO23701.1 117 PKAGLAAVFWTHT--PdgldkyswHAGARVP 145
                     ***********64..3469999999998874 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (191 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       228  (0.0127168); expected 358.6 (0.02)
Passed bias filter:                      217  (0.0121033); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.26s 00:00:00.66 Elapsed: 00:00:00.42
# Mc/sec: 1377.78
//
Query:       KOO23702.1  [L=534]
Description: hypothetical protein Ctob_003496, partial [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    0.00013   22.4   4.7    0.00013   22.4   4.7    2.6  2  ShK           ShK domain-like
     0.0077   16.3  27.5     0.0077   16.3  27.5    3.3  3  HC2           Histone H1-like nucleoprotein HC2


Domain annotation for each model (and alignments):
>> ShK  ShK domain-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -6.9   7.0         2   1.8e+04       7      19 ..     308     320 ..     290     328 .. 0.59
   2 !   22.4   4.7   1.5e-08   0.00013       2      36 ..     421     454 ..     420     455 .. 0.96

  Alignments for each domain:
  == domain 1  score: -6.9 bits;  conditional E-value: 2
         ShK   7 sdCaswaalgfCt 19 
                   C ++aa + C 
  KOO23702.1 308 EKCTTFAACNACA 320
                 3456666555554 PP

  == domain 2  score: 22.4 bits;  conditional E-value: 1.5e-08
         ShK   2 Ct.DpssdCaswaalgfCtnptyrdlmkeqCpktCg 36 
                 C  Dps  Ca+w a g+C + +   +m++ C+ +Cg
  KOO23702.1 421 CAdDPSFPCAKWVASGQCLSIP--VFMHAKCAFSCG 454
                 88899999**************..***********9 PP

>> HC2  Histone H1-like nucleoprotein HC2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.0   2.5    0.0013        12      72     108 ..     110     145 ..      67     156 .. 0.54
   2 ?   -4.0  14.9       1.5   1.3e+04     101     178 ..     233     325 ..     228     334 .. 0.55
   3 !   16.3  27.5   8.6e-07    0.0077      89     149 ..     359     438 ..     337     474 .. 0.51

  Alignments for each domain:
  == domain 1  score: 6.0 bits;  conditional E-value: 0.0013
         HC2  72 kkavakkvvakkkvakKavAKKaaakKvvakkvvakK 108
                  ka+ +   a+++   +a+A Ka a ++++kk +  K
  KOO23702.1 110 EKAADE-RDAERAEDERAAATKADAERAARKKLADEK 145
                 111111.111222222223333333333333322222 PP

  == domain 2  score: -4.0 bits;  conditional E-value: 1.5
         HC2 101 akkvvakKtvakkaaaakKpaakkava..kkaaa..rKaaakKavaKkaast..........ckk.khkkkaackrvasssakraasgsKsrl 178
                 a +++a K+ a +aa  +++aa k  a  k a     K+a   a+  +a+s           ck   ++++a+ +  +++ a+  a++  +  
  KOO23702.1 233 AERAAAEKADAERAAEKARRAAEKQLAdeKEASLllPKPASPIAAQAPATSVppavpatngyCKSwCAQHTASFEEKCTTFAACNACAECTTF 325
                 344555555555555444444444443112222111344444444444444466666777776542578999999999999988888876665 PP

  == domain 3  score: 16.3 bits;  conditional E-value: 8.6e-07
         HC2  89 avAKKaaakKvvakkvvakKtvakkaaaakKpaakkavakkaaarKaaakKavaKkaast....................c 149
                  +A +aaa K+++ k++a K +a   aaa K aa ka+a kaaa K aa Ka+a +aa+                     c
  KOO23702.1 359 EAADQAAADKAATDKAAAEKEAAEE-AAAEKEAADKAAADKAAADKKAAEKAAAEEAAAGnalcaddpsfpcakwvasgqC 438
                 3444444444444444444444444.4444444444445555555555555555444443333334444454444444440 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (534 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1845  (0.102906); expected 358.6 (0.02)
Passed bias filter:                      584  (0.0325729); expected 358.6 (0.02)
Passed Vit filter:                       105  (0.00585643); expected 17.9 (0.001)
Passed Fwd filter:                        43  (0.00239835); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.90u 0.36s 00:00:01.26 Elapsed: 00:00:00.46
# Mc/sec: 3472.32
//
Query:       KOO23703.1  [L=251]
Description: hypothetical protein Ctob_003497, partial [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.6e-08   32.9   0.0    9.7e-08   32.3   0.0    1.4  1  Aha1_N    Activator of Hsp90 ATPase, N-terminal
  ------ inclusion threshold ------
        4.7    7.2  10.8         34    4.4   0.1    2.2  2  SUKH-4    SUKH-4 immunity protein


Domain annotation for each model (and alignments):
>> Aha1_N  Activator of Hsp90 ATPase, N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.3   0.0   1.1e-11   9.7e-08       1      87 [.      70     186 ..      70     246 .. 0.80

  Alignments for each domain:
  == domain 1  score: 32.3 bits;  conditional E-value: 1.1e-11
      Aha1_N   1 eKdatpWskerlkelllslkleneeaksvkitevks..veGdasvnqrKgKvifiydlklklewegtvk.............................k 68 
                 e d + W++  l  +l +l+ +  +a+ v ++++++   e  as+  r+g+   +ydl+l+l w+g+ +                             +
  KOO23703.1  70 EHDFSHWARRALAARLGGLRHARAGAT-VVVDRMDDerSEVHASIQERRGRRALYYDLDLVLHWTGHCAlgeqtlgeeaghapettahtiqgefrhapE 167
                 6799********************998.89988765227888999***********************9**9999999999998888888888888877 PP

      Aha1_N  69 edgkkvkGeieipelssen 87 
                 +++++++Ge+++ ++ +++
  KOO23703.1 168 TTAHTIQGEFRLYNVGQDT 186
                 7778888888888887765 PP

>> SUKH-4  SUKH-4 immunity protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.3  10.7     0.017   1.6e+02       3     154 ..       3     164 ..       1     178 [. 0.70
   2 ?    4.4   0.1    0.0038        34       4      70 ..     141     233 ..     138     241 .. 0.58

  Alignments for each domain:
  == domain 1  score: 2.3 bits;  conditional E-value: 0.017
      SUKH-4   3 areLeelfGpggvvrlpaeavaawllpeparrfLvevGlPdlqllaeeeeaavadlelvaaerseelpaeaggllvLGalesaslvl......dpgtGa 95 
                 a+eL +l  +++v + ++e+ +++   e+++++ +e+G+P  +  a++  a+ + +++  a++ + + ++  ++++      + l++      +++ Ga
  KOO23703.1   3 ADELRRLECARRVATEAREDKERQARREAVAQARREAGVPLAPSRAPANGAEAPSRAAEGAKAAALAEHDFSHWAR------RALAArlgglrHARAGA 95 
                 7788888889999999999999999999************932222233333334444444444455555555553......333333333357899** PP

      SUKH-4  96 VlavdleeeerapVNsdls......aFveclwrlerevpldadlaeeageae....erlaarlrerLra 154
                  ++vd+ ++er  V+ +++      a+ + l+++ ++  ++a ++++ ge++    e+ a +++ ++r+
  KOO23703.1  96 TVVVDRMDDERSEVHASIQerrgrrALYYDLDLVLHWTGHCALGEQTLGEEAghapETTAHTIQGEFRH 164
                 ****************99733333358888888888888888888888877777777777777777665 PP

  == domain 2  score: 4.4 bits;  conditional E-value: 0.0038
      SUKH-4   4 reLeelfGpg.........gvvrlpaeavaawllp..................eparrfLvevGlPdlqllae.eeeaavadlelvaaerseelp 70 
                 ++L+e++G+          g +r+++e+ a++                     +p  ++L +vG+P+ q+  + ++e + ++l+  a+e +e ++
  KOO23703.1 141 QTLGEEAGHApettahtiqGEFRHAPETTAHTI-QgefrlynvgqdtqfnlggDPHTSYLYTVGVPV-QFHNDeRCELWARHLKYEASELFELVS 233
                 556666666666666444444444444444332.135666666666666666689999*********.444445666666666666665555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (251 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       730  (0.0407162); expected 358.6 (0.02)
Passed bias filter:                      419  (0.02337); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.43u 0.22s 00:00:00.65 Elapsed: 00:00:00.37
# Mc/sec: 2018.35
//
Query:       KOO23704.1  [L=849]
Description: dynein heavy chain [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
      2e-61  208.1   0.0    2.9e-61  207.6   0.0    1.2  1  DNase_II     Deoxyribonuclease II
  ------ inclusion threshold ------
      0.074   13.5   0.2       0.17   12.4   0.2    1.5  1  KinB_sensor  Sensor domain of alginate biosynthesis sensor pr


Domain annotation for each model (and alignments):
>> DNase_II  Deoxyribonuclease II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  207.6   0.0   3.2e-65   2.9e-61       2     309 ..      16     329 ..      15     342 .. 0.90

  Alignments for each domain:
  == domain 1  score: 207.6 bits;  conditional E-value: 3.2e-65
    DNase_II   2 CknengkaVdWfilyKlP........skteekegleylYldsesk.ewklskksindaqsalartlqqlykqsdksdvayllYnDqpp.nakassskgh 90 
                 C+ne g+aVdW++lyK P        +   + +g +y+Y +s s  +w+ +++++ +++s ++  l+ +y   d s ++y++YnDq p  + +sss+gh
  KOO23704.1  16 CVNEAGEAVDWWFLYKHPrwtdashkTCIGDCTGSTYVYSTSASPtSWTVGAHTVFQTSSLFGLQLAGVY---DGSVTNYVFYNDQLPdGGGSSSSHGH 111
                 ********************97763222235578888888888879************************...89999********9967888999*** PP

    DNase_II  91 sKGvllldeesGfwlvHSvpkfPpkketgysypssgtqyGqsflCvtlseeqlekiakqllyeepliyssnlpetlakklpslkkllngkhkkippsss 189
                 sKG++++de+s+f++ HSvp fP   + gy+y + +t yGq+ +C++l+ + l++ia  ++y++p +y+++l     +++p+++ ++ +++ +      
  KOO23704.1 112 SKGFFAFDETSAFFVQHSVPDFPEYVKAGYQYGDGQTYYGQHAFCMSLTPKMLNEIALVMQYAYPQVYDKRLDI---TSWPNINAVAAEQKLPG----- 202
                 ***********************999********************************************9995...789****9988777774..... PP

    DNase_II 190 sqklktlk.g.vkfqsfakskkfdkDlysgviaktlksdllvetWsrsdgklpsncs...lkykvlnvkeiki...kdgsqfkstkDhskwavsksknk 280
                  ++++t++ g ++++   k +  + D+ + + a++lk+dl  ++W ++ g +  +c    + y+v+++ +i++   +  +   ++ Dhskwav+k++++
  KOO23704.1 203 -TTVTTIDvGwATLHLQGKASAAEIDMLDLITAPALKTDLWSQSWLNTGGVIGGYCVppgEGYNVTDILTIQLpgeEPPDVHATQVDHSKWAVAKTESD 300
                 .355555548788888888888999********************************99999***********8843444456778************* PP

    DNase_II 281 nwvClgDinrkksqakrgggtvCiknkil 309
                 +w+C  D+n  +sq+ r+g+++C++++ l
  KOO23704.1 301 DWFCALDNNHVESQFGRAGLAICMQQPGL 329
                 *************************9866 PP

>> KinB_sensor  Sensor domain of alginate biosynthesis sensor protein KinB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.2   1.9e-05      0.17      50     101 ..     573     622 ..     563     624 .. 0.85

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 1.9e-05
                  HHHHHHHH--SHHHHHHHHHHHHHHHHH..HHHHHHHHHS-SSSSHHHHHHH CS
  KinB_sensor  50 lLeeglaskvdeaerqaleqiasayrqflqalespatsrrelldnddlseaf 101
                   Lee +++  + +  +a+eqi ++ +++++ + +  tsr+ l d+++ls+++
   KOO23704.1 573 FLEEQQQQ--QLQAAKAFEQIIDKLQALVEKVCKDVTSRSRLSDDNPLSASV 622
                  57776666..4455689********************************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (849 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       992  (0.0553294); expected 358.6 (0.02)
Passed bias filter:                      778  (0.0433934); expected 358.6 (0.02)
Passed Vit filter:                        56  (0.00312343); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.76u 0.29s 00:00:01.05 Elapsed: 00:00:00.44
# Mc/sec: 5739.00
//
Query:       KOO23705.1  [L=94]
Description: u5 small nuclear ribonucleoprotein 200 kda helicase-like protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      1e-14   54.4   0.0    1.1e-14   54.2   0.0    1.0  1  Sec63     Sec63 Brl domain


Domain annotation for each model (and alignments):
>> Sec63  Sec63 Brl domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.2   0.0   6.4e-19   1.1e-14     186     256 ..      10      73 ..       3      74 .. 0.90

  Alignments for each domain:
  == domain 1  score: 54.2 bits;  conditional E-value: 6.4e-19
                 TSBEEEEEEEEETTTTEEEEEEEEEESSTTTTTEEEEEEEEEEE-.SSCCEEEEEEEEESSSSS-EEEEEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       Sec63 186 gksekfwlvvedsendellaikrvtlekkklastqevkleftvplsepgpkqltvrlisdswlgldqevti 256
                  k+e++wlvv++++ ++ll ikr++l+      +++vklef + + e g++ +t++l+sds+lg+dqe+++
  KOO23705.1  10 VKEEGWWLVVGNTKANTLLCIKRISLQL-----KAKVKLEFVA-P-EAGEYVYTLYLMSDSYLGCDQEYEL 73 
                 579***********************77.....47899*****.4.788*******************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (94 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       459  (0.025601); expected 358.6 (0.02)
Passed bias filter:                      337  (0.0187964); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.27s 00:00:00.63 Elapsed: 00:00:00.42
# Mc/sec: 672.98
//
Query:       KOO23706.1  [L=3404]
Description: dynein heavy chain axonemal [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   1.5e-158  527.0   0.0   1.9e-157  523.3   0.0    2.6  3  AAA_6            Hydrolytic ATP binding site of dynein motor 
   1.7e-123  412.7   0.1   1.7e-123  412.7   0.1    3.3  2  DHC_N2           Dynein heavy chain, N-terminal region 2
   4.5e-102  340.8   0.0     1e-100  336.4   0.0    2.4  2  AAA_8            P-loop containing dynein motor region D4
    9.3e-90  300.9   0.0    2.7e-89  299.4   0.0    1.9  1  Dynein_C         Dynein heavy chain C-terminal domain
    1.1e-87  292.8   1.1    1.1e-87  292.8   1.1    2.6  2  AAA_9            ATP-binding dynein motor region
    3.5e-66  222.2   5.0    1.6e-63  213.5   0.0    4.3  4  AAA_7            P-loop containing dynein motor region
    4.1e-47  160.0   0.0    1.1e-46  158.7   0.0    1.8  1  AAA_lid_11       Dynein heavy chain AAA lid domain
    2.6e-44  151.7  19.2    7.4e-44  150.2  18.1    2.2  2  MT               Microtubule-binding stalk of dynein motor
    5.1e-41  139.5   0.0    4.6e-39  133.2   0.0    3.4  3  Dynein_heavy     Dynein heavy chain region D6 P-loop domain
    1.1e-19   70.8   0.1    0.00026   21.0   0.0    5.6  4  AAA_5            AAA domain (dynein-related subfamily)
      4e-16   59.1   0.0    1.4e-15   57.3   0.0    2.0  1  AAA_lid_1        AAA+ lid domain
    1.5e-08   35.2   2.6      0.073   13.4   0.0    5.5  4  AAA_16           AAA ATPase domain
    3.8e-07   30.5   0.1       0.05   13.9   0.0    5.2  4  AAA_22           AAA domain
    4.7e-07   30.3   0.6       0.77   10.2   0.0    4.7  3  AAA              ATPase family associated with various cellul
      2e-06   27.9   0.0    6.5e-06   26.2   0.0    2.0  1  Dynein_AAA_lid   Dynein heavy chain AAA lid domain
    5.4e-06   26.2   0.1          1    9.0   0.0    3.9  3  AAA_30           AAA domain
    6.3e-06   26.5   0.3       0.11   12.9   0.0    4.4  3  RNA_helicase     RNA helicase
     0.0025   18.2   2.6     0.0025   18.2   2.6    3.4  3  HrpB7            Bacterial type III secretion protein (HrpB7)
     0.0044   17.0   5.5      0.062   13.3   0.1    3.9  3  TsaE             Threonylcarbamoyl adenosine biosynthesis pro
      0.007   16.3   4.0      0.058   13.3   0.0    3.6  4  NACHT            NACHT domain
  ------ inclusion threshold ------
      0.011   14.9   0.0       0.25   10.5   0.0    2.5  2  DUF815           Protein of unknown function (DUF815)
      0.017   14.9   0.2       0.14   11.8   0.0    2.6  2  Sigma54_activat  Sigma-54 interaction domain
      0.026   15.0   0.0        1.3    9.6   0.0    3.6  2  AAA_18           AAA domain
      0.031   13.3   1.5        1.4    7.9   0.0    3.4  4  T2SSE            Type II/IV secretion system protein
      0.051   14.1   1.9        1.9    9.0   0.0    4.1  3  ABC_tran         ABC transporter
      0.055   13.8   0.1         25    5.2   0.0    3.5  2  AAA_19           AAA domain
      0.069   12.9   0.2        4.9    7.0   0.0    2.7  2  AAA_29           P-loop containing region of AAA domain
      0.085   12.3   0.0       0.57    9.6   0.0    2.3  2  TniB             Bacterial TniB protein
       0.13   12.8   0.8       0.28   11.7   0.2    1.8  1  Self-incomp_S1   Plant self-incompatibility protein S1
       0.22   11.7   3.2        7.6    6.7   0.1    3.7  3  AAA_33           AAA domain
       0.48    9.8   6.3       0.74    9.2   0.0    3.5  4  Mg_chelatase     Magnesium chelatase, subunit ChlI
        1.1    9.3  31.4      0.024   14.7  11.0    4.3  4  DHR10            Designed helical repeat protein 10 domain
        4.6    7.4  18.7       0.25   11.5   5.1    3.6  3  ATG16            Autophagy protein 16 (ATG16)


Domain annotation for each model (and alignments):
>> AAA_6  Hydrolytic ATP binding site of dynein motor region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  523.3   0.0  3.6e-160  1.9e-157       1     327 []     758    1084 ..     758    1084 .. 1.00
   2 ?   -2.3   0.1         3   1.6e+03     313     327 .]    1356    1370 ..    1349    1370 .. 0.84
   3 ?   -0.0   0.0      0.63   3.4e+02     204     227 ..    1563    1586 ..    1544    1623 .. 0.78

  Alignments for each domain:
  == domain 1  score: 523.3 bits;  conditional E-value: 3.6e-160
       AAA_6    1 YgyeYlgnserLviTpltdrcyltltqAlklklggapaGpagtGKtEtvkdLakalakqvvvfncsdqldykslgkifkGlaqsGaWgCfdeFnrie 97  
                  YgyeYlgns rLv+Tpltd+cy+tlt  l+l +ggapaGpagtGKtEt+kdLakala+q+vv+nc  +l++ ++g++f+GlaqsGaW+CfdeFnri+
  KOO23706.1  758 YGYEYLGNSMRLVVTPLTDKCYMTLTGGLNLGMGGAPAGPAGTGKTETTKDLAKALARQCVVMNCGPDLTVPTMGRFFSGLAQSGAWACFDEFNRID 854 
                  9************************************************************************************************ PP

       AAA_6   98 levLSvvaqqiktiqqalkekkkkfvfegkeiklnksvgifitmnpgyagrteLPdnLkalfRpvammvPdlelIaeimLfseGfkeakelakklvt 194 
                  +evLSv+aqq+ ti++a+k k ++f+feg+ei+ln+ +g+fitmnpgyagr+eLPdnLkalfRpvamm+Pd++lIaeimLfseGf eak l++k+++
  KOO23706.1  855 IEVLSVIAQQVLTIMEAVKMKVERFIFEGREISLNPGYGVFITMNPGYAGRAELPDNLKALFRPVAMMIPDYRLIAEIMLFSEGFGEAKPLSTKMTK 951 
                  ************************************************************************************************* PP

       AAA_6  195 lykllseqlskqdhydfglralksvlkaagelkreepeeseeelllralrdvnlpklvaeDvplfkglisdlFpgvelpesdyeeleeaieevlkek 291 
                  ly+l+seqlskqdhydfg+ra+ksvl++ag lkre+p+  e+ +l+ralrd+n+pk++ +D+plf ++i+dlFpgv++p++dy +l++aie++++ +
  KOO23706.1  952 LYQLSSEQLSKQDHYDFGMRAVKSVLVMAGGLKRENPQIAEDITLIRALRDSNVPKFLYHDLPLFVAIIQDLFPGVTIPNVDYGTLQKAIERQITLN 1048
                  ************************************************************************************************* PP

       AAA_6  292 klqleekfvekviqlyetlkvrhgvmlvGetgsgKt 327 
                  ++q+ +++v kviql+et+ vrhgvm+vG t++gKt
  KOO23706.1 1049 GMQPVPSYVAKVIQLFETMLVRHGVMVVGLTLTGKT 1084
                  ***********************************8 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 3
       AAA_6  313 rhgvmlvGetgsgKt 327 
                   + vm+vGetg+gK+
  KOO23706.1 1356 STNVMMVGETGTGKS 1370
                  5679**********7 PP

  == domain 3  score: -0.0 bits;  conditional E-value: 0.63
       AAA_6  204 skqdhydfglralksvlkaagelk 227 
                   +++hy f+lr +  v++ a ++ 
  KOO23706.1 1563 PSKSHYTFNLRDVSRVMQGALQIT 1586
                  4689*************9998775 PP

>> DHC_N2  Dynein heavy chain, N-terminal region 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  412.7   0.1  3.1e-126  1.7e-123       2     397 .]     197     605 ..     196     605 .. 0.96
   2 ?   -1.6   0.0         2   1.1e+03     181     222 ..    2510    2567 ..    2487    2587 .. 0.69

  Alignments for each domain:
  == domain 1  score: 412.7 bits;  conditional E-value: 3.1e-126
                 XXXXXXXXXXXXXXXXXXXXXXXXXXX.....XXXXXXXXXXXXXXXXXXXXXXXXXXXX....XXXXXXXXXXXXXXXXXXXXXXXXXXXXX..XXXX CS
      DHC_N2   2 eeikkelellkklwdlvsewqekleewkktpfkeldveeleeevkellkklkklpkalke....wevakelkekieefkevlplieelrnpal..rerH 94 
                 +++  ++el  +lw+ ++ w+e l +wk   fk l+veel +ev + +k+++kl+k+        +v++++ke++e+fke +p+i++l n a+  ++rH
  KOO23706.1 197 NDTMGQYELRMELWSKLDTWNEMLYAWKAVDFKALNVEELIKEVAQNYKDAHKLSKRPGPnglpDPVVTMFKESVEDFKEQMPCIQDLANLAVvgKDRH 295
                 677789999************************************99*99***999644468999********************************** PP

                 XXXXXXXX..XXXXXXXX.XXXXXXXXXXX..XXXXXXXXXXXXXX-HHHHHHHHHHHHHHTS---EEEE-SSS..TEEE..THHHHHHHHHHHHHHHH CS
      DHC_N2  95 wkelsellgvikdpdseesltlgdllelgl..leeeieeisekAtkEaslekalkkieeewkelefelteykdsg.vfilkgvdeiielledhivklqs 190
                 w +l ++lg  +++ + + +tl++ll++g+   +e i+e s++A++E+ le+ l+ki++ w+++ f + +++d+  +fi++g+de++ +led++v lq+
  KOO23706.1 296 WAKLYDKLG--QSYYPGAPFTLEQLLSYGAtkQAEFINETSNNASGEFGLEQLLEKIRKGWADIGFVTLNHRDQAdIFIVGGIDEVVVQLEDSQVGLQT 392
                 ********8..44667778***********755999************************************9988*********************** PP

                 TCSSSTT..THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT.THHHHHHTHHHHHHHHHHHHHHHHHHHHHHTTSGGGG...STTHHHHHHHHHH CS
      DHC_N2 191 mksspyvkpfeeeveewekklsrlqeildewlkvQrkWlyLepifssedirkqlpeeakrFksvdkewkkimkevskdpnvleatskpgllekleelne 289
                 +++s++v+ +++eveewekkls+l+e+ldewl++Qr+W+yLe+if +edi+kqlp e+++F +++k++ + m++++++pnv++ ++ pgll+++ ++n+
  KOO23706.1 393 ILASRFVGGIRTEVEEWEKKLSTLSEVLDEWLTCQRSWMYLENIFGAEDIQKQLPAESQKFTKINKFFIDRMRKCHDNPNVIAQVTVPGLLDTFLDANK 491
                 *******77************************************99*********************************9999999************ PP

                 HHHHHHHHHHHHHHHHHHHSTTHHHH-HHHHHHHHHTTTTSGGGHHHHHHHHSSEEEESE........EEEEEETTS-EEEEE.....E.EEEHHHHHH CS
      DHC_N2 290 qlekiqksLneyLekkRlafpRFyFlsddeLleilsqskdpsavqphlkkcFegiaslefee...kkeitgmiskegEkvelse...argnveeWLnel 382
                 ql++iqksLn+yLe k +afpRFyFls+deLleilsq++dp avqphl kcF++i++l+f +    k+++++is e E+v++ +   a+g+ve WL ++
  KOO23706.1 492 QLDEIQKSLNDYLELKCAAFPRFYFLSNDELLEILSQTRDPYAVQPHLIKCFDAIKRLQFGDmedAKKMLAIISGEAEVVPFVNcpmAEGPVEVWLMNM 590
                 ************************************************************99999*****************99*************** PP

                 HHHHHHHHHHHHHHH CS
      DHC_N2 383 eeemkktlkellkea 397
                 + +m ++l + +k+a
  KOO23706.1 591 QLAMIEALYTNCKNA 605
                 ********9999875 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 2
                  HHHHH...............HHHHHTCSSSTT...THHHHHHHHHHHHHHHHHHHHHH CS
      DHC_N2  181 ledhi...............vklqsmksspyv.kpfeeeveewekklsrlqeildewl 222 
                  led i               + ++++ ss+ + k+ ee+v+  e + +++ ++ ++  
  KOO23706.1 2510 LEDTIlrllaessgnilddeALINTLDSSKKIsKKTEESVKGAEVTTKEIVQTCEAYR 2567
                  33333333333334444444999******9998889********99999999988765 PP

>> AAA_8  P-loop containing dynein motor region D4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.6   0.0      0.26   1.4e+02      18      41 ..    1350    1373 ..    1346    1376 .. 0.90
   2 !  336.4   0.0  1.9e-103    1e-100       1     260 []    1689    1948 ..    1689    1948 .. 0.99

  Alignments for each domain:
  == domain 1  score: 1.6 bits;  conditional E-value: 0.26
       AAA_8   18 RvlrqprghaLlvGvgGsGrqslt 41  
                   vl  ++ ++++vG  G+G+  l+
  KOO23706.1 1350 KVLVDNSTNVMMVGETGTGKSVLV 1373
                  6899999*************9987 PP

  == domain 2  score: 336.4 bits;  conditional E-value: 1.9e-103
       AAA_8    1 ldLvlfedaiehlarilRvlrqprghaLlvGvgGsGrqsltkLAafiaelelfqievtkkykekefredlkkllkkagikqkevvfllsdnqiiees 97  
                  ++Lv+f+da  hlari+Rv++qprg aLlvGvgGsGr sl++LAa++ e+e+  ie+t++y+ + +++dlk+++  ag+++k++vfl+sd+qii+e+
  KOO23706.1 1689 MNLVFFTDATLHLARISRVITQPRGCALLVGVGGSGRSSLARLAASMWEMECLGIEITRTYDFNAWHDDLKTFMFAAGCENKPTVFLFSDTQIIKEA 1785
                  9************************************************************************************************ PP

       AAA_8   98 fledinnlLntGevpnLfskeekeeiieelrkeakkqgvedskesllnffikrvrenLhivlcmspvgeafrsrlrkfpsLvncttidwfqeWPeea 194 
                  ++edin +Ln+GevpnLf++e++++i++++r  ak++g+ + ++++++ fi+ vrenLhiv+c+sp+g+afr r+r+fpsL+nc+tidwf++WP++a
  KOO23706.1 1786 MVEDINGILNSGEVPNLFAEEDMQRILSACRPLAKEAGKGEGRDDIYKHFISLVRENLHIVMCVSPIGDAFRVRCRMFPSLINCCTIDWFDAWPKDA 1882
                  ************************************************************************************************* PP

       AAA_8  195 LleVaekvleeeeeieeelkesivkvlvevhssveelsekfleelkrkiyvtpksylellktykkl 260 
                  Ll+Va++++e++   + e+k +i++++ve+h sv ++  +f+++l+rk+y+tp+sylell++y+++
  KOO23706.1 1883 LLAVANRYFEKVDMGSPETKAAICNICVEIHYSVGQAGDDFFAQLRRKTYTTPTSYLELLNLYSTM 1948
                  ***************************************************************876 PP

>> Dynein_C  Dynein heavy chain C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  299.4   0.0     5e-92   2.7e-89       1     306 [.    3090    3399 ..    3090    3400 .. 0.93

  Alignments for each domain:
  == domain 1  score: 299.4 bits;  conditional E-value: 5e-92
                  HHHHHHHHHHHHHCCCTTT-------..CCH--------------..----...............-HHHHHHHHHHHHHHHHHHHHHHHHHHHHC- CS
    Dynein_C    1 tketeellstllslqpressssgsggssreekvlelaadileklpelfdleeaekk.....pteyeeplntvllqElerfnkLleeirrsLkelqka 92  
                  tke++ +l+t++slqpr+   +g+gg+s++e+v e+++d+++++p++++l+ea  +     + +  +pl ++l qE+++fn+++  i++ L+elq++
  KOO23706.1 3090 TKESAGMLETIISLQPRTG--GGGGGKSSDEVVGEVCDDLVARMPKNLNLKEAGAStfaklEDGSMNPLGIFLSQEIDKFNRMIGAIKTMLNELQRG 3184
                  579999***********75..445777889****************999996333345668999********************************* PP

                  --------HHHHHHHHHHHHTS--GGG.--..---SS--HHHHHHHHHHHHHHHHHHH---.....B-GGGSS-HHHHHHHHHHHHHHHTT-----E CS
    Dynein_C   93 ikGevvmseeleelansllngkvPesWakk..sypslkplgsWvrdLleRvkqlqkwleeegkPkvfwLsgfffPqaFLtavlqnyarknkipidel 187 
                  +kG+vvms++l++++ +ll ++vP  W +    ypslkpl+sW++d++ Rv++++ wl+  g+Pk+fw+s+ ffPq+F+t+ lq yark+k +id l
  KOO23706.1 3185 LKGLVVMSAQLDAAYANLLFQQVPGPWGEGgkGYPSLKPLASWYKDFVGRVEFMRGWLT-GGPPKSFWISAVFFPQGFFTSALQAYARKYKEAIDLL 3280
                  ***************************654559*************************4.479********************************** PP

                  E--EE---.............-EEE-SEEEESSEE..ETTCEE-SS...SEEEES-EEEE-E----TS.....EEEEEESSTT--SE.......... CS
    Dynein_C  188 tfefevtkkekeeeaeeepedGvyihGLfleGarwdkkegvLaesepkelfselPvihlkpveakkkekkkkkyecPvYktseRrgvlstt.hstnf 283 
                  +f   v+ +   e++ ++p dGv+ihG+f+eGar+d keg++aes+++elf ++ v+hl p +   + ++k +yecP Ykt  R+g+lst  hstn 
  KOO23706.1 3281 EFVAFVKPYAGLEDVPAAPPDGVFIHGMFMEGARFDPKEGCMAESHQGELFAPMNVLHLMPDKIGPD-RAKGNYECPFYKTNVRAGTLSTAgHSTNH 3376
                  *******988888889999******************************************876666.56667************************ PP

                  EEEEEE.....-BHHHTTT-EEE CS
    Dynein_C  284 vfsvdLptkkpeehwilrgvall 306 
                  v++++L++k+++  w++rg+al+
  KOO23706.1 3377 VCNFWLKSKEDPLLWTRRGTALI 3399
                  ********99999********97 PP

>> AAA_9  ATP-binding dynein motor region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.3       2.8   1.5e+03     160     204 ..      92     136 ..      90     145 .. 0.85
   2 !  292.8   1.1     2e-90   1.1e-87       1     218 [.    2324    2543 ..    2324    2545 .. 0.98

  Alignments for each domain:
  == domain 1  score: -1.9 bits;  conditional E-value: 2.8
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSSSSTHH CS
       AAA_9 160 erpeleekkeeliqeeaenkkqlkeledklLeeLseaegniLede 204
                 ++ +l+e +++l++++ +    + e  +++  +L+++  n+ ed 
  KOO23706.1  92 KKDDLKEARDKLTEQTGSADGAVGEKMEQMVATLNKSIANLNEDL 136
                 67899******************99999*******9999997764 PP

  == domain 2  score: 292.8 bits;  conditional E-value: 2e-90
                  .HHH.HT--STHHHHHHHHHHH..SSEEEEESSSTTHHHHHHH.......HEESTTSTTHHHHHHHHHHTTSEEEESTT.SSHHSTTHHHHTTCCEE CS
       AAA_9    1 reWnlqgLPsDelsieNaiivtkserwPlliDPqgqankwiknk.ekeklkviklsdkkflktLenairfGkplliedvgeeldpiLepvLekeiik 96  
                  reW ++gLP+D+lsieNai+vt+s+rwPl+iDPq+qan+wikn  +++kl++ikls+++fl+tLe++ir G p+l+e+v+e ldp+L+pvL k+++k
  KOO23706.1 2324 REWGIAGLPQDNLSIENAIFVTRSRRWPLMIDPQSQANRWIKNLeKDNKLRIIKLSQSDFLRTLESSIRVGVPVLLENVQEALDPSLDPVLLKQVYK 2420
                  58*9****************************************77777************************************************ PP

                  ...CEEEESSSE.EE--SSCEEEEEESSTTSHHHHHHHHHSEEEE---SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
       AAA_9   97 .kgrkliklgdkeieysenFrLylttklsnphyspeiaakvtlinFtvteeGLedqlLaevvkkerpeleekkeeliqeeaenkkqlkeledklLee 192 
                   +gr+l++lgd++++ysenF++y+t+ l+nphy pe+++kvt++nFtvt eGLedqlLa+v + erp+l++kkeel+ ++a+ +k+++eled++L+ 
  KOO23706.1 2421 sQGRMLLRLGDTDVDYSENFKFYITSPLANPHYAPEVCIKVTIVNFTVTIEGLEDQLLADVASLERPDLQQKKEELVISIAAGRKTIQELEDTILRL 2517
                  557********************************************************************************************** PP

                  HHHSSSSSSTHHHHHHHHHHHHHHHH CS
       AAA_9  193 LseaegniLedeelietLeksKktae 218 
                  L+e++gniL+de+li+tL++sKk ++
  KOO23706.1 2518 LAESSGNILDDEALINTLDSSKKISK 2543
                  ***********************987 PP

>> AAA_7  P-loop containing dynein motor region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.4   0.1     0.043        23      39      65 ..     795     820 ..     775     824 .. 0.87
   2 ?    2.5   0.1      0.17        91      31      58 ..    1068    1095 ..    1055    1100 .. 0.80
   3 !  213.5   0.0     3e-66   1.6e-63       1     179 [.    1324    1509 ..    1324    1511 .. 0.96
   4 ?   -0.7   0.0       1.6   8.9e+02      12      52 ..    1691    1731 ..    1682    1753 .. 0.78

  Alignments for each domain:
  == domain 1  score: 4.4 bits;  conditional E-value: 0.043
       AAA_7  39 vGptGtGKtviikdllkkldkekylsl 65 
                  Gp+GtGKt ++kdl k+l  ++++++
  KOO23706.1 795 AGPAGTGKTETTKDLAKALA-RQCVVM 820
                 69***************999.555544 PP

  == domain 2  score: 2.5 bits;  conditional E-value: 0.17
       AAA_7   31 knkkpvllvGptGtGKtviikdllkkld 58  
                    ++ v++vG t tGKt+ ++ l  +l+
  KOO23706.1 1068 LVRHGVMVVGLTLTGKTMNTNMLAAALS 1095
                  45788*************9998877776 PP

  == domain 3  score: 213.5 bits;  conditional E-value: 3e-66
       AAA_7    1 feideeakfseilVptvdtvrysyllelllknkkpvllvGptGtGKtviikdllkkldkek.......ylsltinfsaqtsanqlqdiiesklekrr 90  
                  f++++ ++++ ilVpt +t+++++ll+ l++n+ +v++vG+tGtGK+v+++ +l++l++++       ++s++  fsaqt a+++qd++eskl+k r
  KOO23706.1 1324 FTYQKGMPYFGILVPTGETTCFEFLLKVLVDNSTNVMMVGETGTGKSVLVQGFLSRLPQQSpapgspgFTSIQAAFSAQTAAKNMQDLLESKLDKLR 1420
                  67999*****************************************************8754444455899************************** PP

       AAA_7   91 kgvygPpggkklvvFvDDlnmpakekygaqppiellRqlldyggwYdrkklefkeikdvqlvaamgppgggrneitpRllrhfnvlait 179 
                  k+++g+p+g++ v+FvDD+nmpa ekygaqppiel+Rq l +gg+Yd+kkl fk++++++++aa+gp gggrn +tpRl+rhfn+l i+
  KOO23706.1 1421 KNLLGAPPGRQNVIFVDDINMPALEKYGAQPPIELVRQTLAQGGFYDLKKLFFKKVQNTSFLAACGPAGGGRNAMTPRLTRHFNLLWIP 1509
                  *************************************************************************************9987 PP

  == domain 4  score: -0.7 bits;  conditional E-value: 1.6
       AAA_7   12 ilVptvdtvrysyllelllknkkpvllvGptGtGKtviikd 52  
                  ++  t  t+ +  + + + + +   llvG  G+G++++++ 
  KOO23706.1 1691 LVFFTDATLHLARISRVITQPRGCALLVGVGGSGRSSLARL 1731
                  555677788888888899999999************99865 PP

>> AAA_lid_11  Dynein heavy chain AAA lid domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  158.7   0.0     2e-49   1.1e-46       1     164 []    2916    3084 ..    2916    3084 .. 0.90

  Alignments for each domain:
  == domain 1  score: 158.7 bits;  conditional E-value: 2e-49
                  HHHHHHHHCT-HHHHT............HHHHHHHHHHHHHHHHHGGGGTTTS-SS-----HHHHHHHHHHHHHHHHHCSSGGS-HHHHHHHHHHTT CS
  AAA_lid_11    1 kanllraysnesekideeffee..keeefkkllfsLcffHavvqeRrkFgplGwnipYeFnesdleisvevlkmyldeyeekevpwealkyligein 95  
                  kan+ r+y      +d +++e   + +efk+llf+Lcff av+qeRrk+g++Gwni Y++ +sdl+ ++  lk +ld++   +vpweal+++i++++
  KOO23706.1 2916 KANIGRSYID----MDVSTLEGcaQPTEFKNLLFGLCFFNAVIQERRKYGAIGWNIAYQWMTSDLNFAQANLKLFLDQNP--SVPWEALNIIISDVI 3006
                  7999999944....55566775678999************************************************9998..*************** PP

                  TSTT--SHHHHHHHHHHHHHHSSGGGGSTT.......-....T...E---SSHHHHHHHHCTS-SS--CCCCTS-TTH CS
  AAA_lid_11   96 YGGrvtDdwDrrllktyleeffseevleee....yk.s....geykipeeksleeyleyieslpladspevfglhena 164 
                  YGGrvtD+ D rl +++l+++++++++ +     y  +     +y++p e+ +++y+++i+++pl+d+pe+fglh na
  KOO23706.1 3007 YGGRVTDKQDVRLTRAILSSYLDPQTIAQPttfsYCpQldakFRYCAPPEGPIDTYRQFISTFPLVDRPEIFGLHLNA 3084
                  ***************************6655544223145557899999**************************997 PP

>> MT  Microtubule-binding stalk of dynein motor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.0       1.6   8.8e+02     258     299 ..     371     412 ..     337     418 .. 0.76
   2 !  150.2  18.1   1.4e-46   7.4e-44       5     340 ..    1965    2292 ..    1962    2296 .. 0.94

  Alignments for each domain:
  == domain 1  score: -1.3 bits;  conditional E-value: 1.6
          MT 258 fekatadklkcqqeaeatartislanrlvgglasenvrwaea 299
                 f     d +  q e         la r+vgg+ +e   w + 
  KOO23706.1 371 FIVGGIDEVVVQLEDSQVGLQTILASRFVGGIRTEVEEWEKK 412
                 55556677888888888888889***********99999765 PP

  == domain 2  score: 150.2 bits;  conditional E-value: 1.4e-46
          MT    5 ngllklqstaaqvddlkaklaaqevelkqknedadkliqvvgvetekvskekaiadeeekkvavinkevkkkqkdceedlakaepallaaqealntl 101 
                   g+ kl  t a vd +k  l+  +  l q  +d+ kl++ v v+       k    +ee  v  + ke +  + d + dl  a pa+ a+ +al++l
  KOO23706.1 1965 GGVNKLIETNAVVDTMKDELTKLQPVLVQAAKDTTKLLEEVSVDQANADEVKQRVAKEEAAVGEVAKEAQAIAADAKRDLDEAMPAFYASVDALKSL 2061
                  5899********************************************99999999***************************************** PP

          MT  102 nktnltelksfgsppdavvnvaaavmvllaprgkvpkdrswkaakivmakvdafldslinfdkenihenclkaikeylndpefepefikskslaaag 198 
                  nk+++ e+k++  pp+ vv    av +ll  +        w  ak +m+ +d fl+ l+n+dk+ni+e+ +k i++y+++ +f pe++   s+aa  
  KOO23706.1 2062 NKNDINEVKAYKQPPELVVLTLEAVCILLGVK------PDWGEAKKLMSAMD-FLEQLQNYDKDNIEEKKIKNIQKYMKNEKFLPEMVGKVSTAAKS 2151
                  ****************************9654......36*********998.9******************************************* PP

          MT  199 lcswvinivrfyevycdvepkrqalekanaelaaaqeklaaikakiaelnanlaeltaafekatadklkcqqeaea.tartislanrlvgglasenv 294 
                  lc wv  +  +  v   vepk+  l  a+++la++q  l   ++ + e++  +a l  +++  t  k k  +e ea t++ +  a++lvggl se+ 
  KOO23706.1 2152 LCMWVRAMDTYARVAKTVEPKKAKLLAAQKQLADSQAMLKEKQDALKEVERRVAGLKKKLDD-TQRKAKQLEEQEAdTKVKLERADKLVGGLGSEKT 2247
                  **********************************************************9986.555666554544426778999************* PP

          MT  295 rwaeavenfksqektlcgdvllitafvsyvgfftkkyrqelldrlw 340 
                  rw +    +++ ++ + g+ ++ +  ++y g ft kyr+ l  + w
  KOO23706.1 2248 RWEQLCVRLNQGQRNVVGNTIVCAGAIAYEGPFTAKYRNALNSQ-W 2292
                  ***************************************98654.4 PP

>> Dynein_heavy  Dynein heavy chain region D6 P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.1       7.8   4.3e+03      19      48 ..    1990    2019 ..    1983    2024 .. 0.84
   2 ?    1.8   0.0      0.45   2.5e+02      12      98 ..    2356    2450 ..    2348    2464 .. 0.64
   3 !  133.2   0.0   8.4e-42   4.6e-39       2     119 .]    2792    2915 ..    2791    2915 .. 0.96

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 7.8
                    HHHHHHHHTT--EEEEETTSHHHHHHHHHH CS
  Dynein_heavy   19 sleklakklkklvksvslGqgqeeeaekal 48  
                     l + ak+++kl+++vs+ q + +e+++ +
    KOO23706.1 1990 VLVQAAKDTTKLLEEVSVDQANADEVKQRV 2019
                    6789999999**********9998888765 PP

  == domain 2  score: 1.8 bits;  conditional E-value: 0.45
                    TT--THHHHHHHHHHTT--EEEEETTSHHHHHHHHHHHHHHHHT-EEEEE-GGG-..CCCHHHHHHH..................HHTT-EEEEE CS
  Dynein_heavy   12 pgadptesleklakklkklvksvslGqgqeeeaekalekaakegsWvlLqNchla..pswlkeLekileel...........eeklhssfRlwlt 93  
                    p++++ +++++l k  ++ ++++ l q       ++le++++ g  vlL+N++ a  ps  + L k + ++           + + +++f+ ++t
    KOO23706.1 2356 PQSQANRWIKNLEK--DNKLRIIKLSQSD---FLRTLESSIRVGVPVLLENVQEAldPSLDPVLLKQVYKSqgrmllrlgdtDVDYSENFKFYIT 2445
                    33444444444444..4444666666654...5899****************9994445545444443322466777777666666779999999 PP

                    EES-T CS
  Dynein_heavy   94 sepsp 98  
                    s  ++
    KOO23706.1 2446 SPLAN 2450
                    86655 PP

  == domain 3  score: 133.2 bits;  conditional E-value: 8.4e-42
                    TTS-EEEEE-TT--THHHHHHHHHHT....T--EEEEETTSHHHHHHHHHHHHHHHHT-EEEEE-GGG-CCCHHHHHHH.........HHTT-EE CS
  Dynein_heavy    2 pttPvlfilspgadptesleklakkl....kklvksvslGqgqeeeaekalekaakegsWvlLqNchlapswlkeLekileel..eeklhssfRl 90  
                    +++P++f+l++gadpt+ l +l++k     + ++k+vslGqgq++ ae+++ +++ +g Wv+LqNchla+swl++L+++le+l  ++ + ++fR+
    KOO23706.1 2792 SKVPIVFVLTSGADPTQYLLALGRKYdysvGDNLKMVSLGQGQGPIAERLMAEGQGKGYWVCLQNCHLAVSWLPTLDRLLEQLrdASGIAEDFRM 2886
                    789*********************8889997777***********************************************88888999****** PP

                    EEEEES-TTS-HHHHHTSEEEEE---SSH CS
  Dynein_heavy   91 wltsepspkfPislLqssikvtnepPkgl 119 
                    wlt++p+p+fP ++Lq+s+k+t epPkgl
    KOO23706.1 2887 WLTTMPTPEFPSTILQNSLKLTQEPPKGL 2915
                    ***************************97 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.4   0.0   6.4e-06    0.0035       6     138 .]     796     916 ..     795     916 .. 0.78
   2 !   21.0   0.0   4.9e-07   0.00026       2     138 .]    1073    1217 ..    1072    1217 .. 0.87
   3 !   20.9   0.0     5e-07   0.00027       1     138 []    1358    1503 ..    1358    1503 .. 0.86
   4 ?    3.3   0.0      0.14        75       3      28 ..    1716    1741 ..    1715    1751 .. 0.81

  Alignments for each domain:
  == domain 1  score: 17.4 bits;  conditional E-value: 6.4e-06
                 --SSSSHHHHHHHGGGGBS--EEEEE--TT--HHHHH--B--.........--------G-SEEEEESGGG--HHHH....HHHHHHHHSSEEE..-SS CS
       AAA_5   6 GppGtgKselaerlaaalnreveyvqltrdtteedlkgrreikngttslvdsplvraaregeilvlDEveraesevl....nsLlslleerrllleegg 100
                 Gp GtgK+e ++ la+al r+ +++++  d+t  ++    +            l   a++g+ +++DE++r++ evl    + +l+++e  ++ +e   
  KOO23706.1 796 GPAGTGKTETTKDLAKALARQCVVMNCGPDLTVPTMGRFFS-----------GL---AQSGAWACFDEFNRIDIEVLsviaQQVLTIMEAVKMKVERFI 880
                 9*******************************998766665...........44...59************9977651111457788888888877654 PP

                 SEEE---......-EEEEEESS--.-TT-TTHHHHTT- CS
       AAA_5 101 elvkaknddllerfrviatanpldrslnelspalrsRf 138
                 ++ ++ +  l +   v+ t+np + +++el  +l+ +f
  KOO23706.1 881 FEGREIS--LNPGYGVFITMNPGYAGRAELPDNLKALF 916
                 4444433..33349999999999999999999998776 PP

  == domain 2  score: 21.0 bits;  conditional E-value: 4.9e-07
                  EEEE--SSSSHHHHHHHGGGGB.............S--EEEEE--TT--HHHHH--B--.........--------.........G-SEEEEESGGG CS
       AAA_5    2 vlLvGppGtgKselaerlaaal.............nreveyvqltrdtteedlkgrreikngttslvdsplvraar.........egeilvlDEver 76  
                  v++vG + tgK++ +  laaal             + + +  ++++++t  +l g+++    t++++d+++   +r         + ++++++ v+ 
  KOO23706.1 1073 VMVVGLTLTGKTMNTNMLAAALsqlkrdgdespkyEVTKQHWLNPKSITMGELYGEVN--TVTQEWSDGIVPYLVRlcvtdesenKNWVVFDGPVD- 1166
                  7788888899999999999999999999986665555556667889999999999999..5***********9999********888888888888. PP

                  --HHHHHHHHHHHHSSEEE..-SSSEEE---......-EEEEEESS--.-TT-TTHHHHTT- CS
       AAA_5   77 aesevlnsLlslleerrllleeggelvkaknddllerfrviatanpldrslnelspalrsRf 138 
                      +++ ++++l+++++l  ++ge++k +++      + +++ n+l+     +spa++sR+
  KOO23706.1 1167 --ALWIENMNTVLDDNKMLCLSNGERIKLAKT-----QHMMFEVNDLS----VASPATVSRC 1217
                  ..99*************************998.....59999999999....8899999995 PP

  == domain 3  score: 20.9 bits;  conditional E-value: 5e-07
                  EEEEE--SSSSHHHHHHHGGGGB..........S--EEEEE--TT--HHHHH--B--.........--------G-SEEEEESGGG--HHHHHHHHH CS
       AAA_5    1 dvlLvGppGtgKselaerlaaal..........nreveyvqltrdtteedlkgrreikngttslvdsplvraaregeilvlDEveraesevlnsLls 87  
                  +v++vG++GtgKs l++ ++++l          + +    +++++t +++++  +e  ++  +l+++ l     +  ++++D++++   e  ++  +
  KOO23706.1 1358 NVMMVGETGTGKSVLVQGFLSRLpqqspapgspGFTSIQAAFSAQTAAKNMQDLLE--SKLDKLRKNLLGAPPGRQNVIFVDDINMPALEKYGAQ-P 1451
                  69*********************988888766666666677888888888888888..5666777777776666********************9.9 PP

                  HHHSSEEE..-SSSEEE---.......-EEEEEESS--.-TT-TTHHHHTT- CS
       AAA_5   88 lleerrllleeggelvkakndd.llerfrviatanpldrslnelspalrsRf 138 
                  ++e  r  l++gg++  +k ++   ++++++a++ p+ +++n ++p+l + f
  KOO23706.1 1452 PIELVRQTLAQGGFYDLKKLFFkKVQNTSFLAACGPAGGGRNAMTPRLTRHF 1503
                  9*******************8766666********************99876 PP

  == domain 4  score: 3.3 bits;  conditional E-value: 0.14
                  EEE--SSSSHHHHHHHGGGGBS--EE CS
       AAA_5    3 lLvGppGtgKselaerlaaalnreve 28  
                  lLvG  G+g+s+la+  a++ + e +
  KOO23706.1 1716 LLVGVGGSGRSSLARLAASMWEMECL 1741
                  8***************9998766655 PP

>> AAA_lid_1  AAA+ lid domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.3   0.0   2.5e-18   1.4e-15       1      91 [.    1544    1634 ..    1544    1642 .. 0.95

  Alignments for each domain:
  == domain 1  score: 57.3 bits;  conditional E-value: 2.5e-18
   AAA_lid_1    1 lvaaalalhkkiaatflptaikfhyvfnlrdlsnifqgllfssaevlkapldlirlylheservygdkmveekdlellekvtlevakkffd 91  
                  +v a++ +++++ a +lpt  k hy fnlrd+s ++qg l  ++     p  ++rl+ he+ rv+ d+++ +kd   + +  +e++k +f 
  KOO23706.1 1544 VVRATIHIYNRMLAEMLPTPSKSHYTFNLRDVSRVMQGALQITPAKAPDPDAFLRLWAHETCRVFCDRLISDKDRTWFRHEIVESVKTTFS 1634
                  68899****************************************999********************************99*****9996 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.7   0.0     0.008       4.3      31      69 ..     796     830 ..     795     877 .. 0.76
   2 !   13.4   0.0   0.00013     0.073      16      71 ..    1349    1410 ..    1341    1462 .. 0.73
   3 !    8.7   0.0    0.0038       2.1      17      49 ..    1705    1737 ..    1697    1844 .. 0.75
   4 ?   -1.8   0.1       6.6   3.6e+03      67     126 ..    1985    2051 ..    1953    2062 .. 0.46

  Alignments for each domain:
  == domain 1  score: 7.7 bits;  conditional E-value: 0.008
      AAA_16  31 GesGvGKsslvrellralekdggiflrgkcdqlesaipy 69 
                 G++G+GK+   + l++al ++ ++++++  d     +p 
  KOO23706.1 796 GPAGTGKTETTKDLAKALARQ-CVVMNCGPDLT---VPT 830
                 9******************99.77777777766...333 PP

  == domain 2  score: 13.4 bits;  conditional E-value: 0.00013
      AAA_16   16 lervrsgrpelvllsGesGvGKsslvrellralekd.......ggif..lrgkcdqlesaipysa 71  
                  l+ + +++  +v+ +Ge G+GKs lv+ +l +l ++       g  f  +++ +   ++a  ++ 
  KOO23706.1 1349 LKVLVDNS-TNVMMVGETGTGKSVLVQGFLSRLPQQspapgspG--FtsIQAAFSAQTAAKNMQD 1410
                  55555555.68999*******************99988886542..3235555555544444444 PP

  == domain 3  score: 8.7 bits;  conditional E-value: 0.0038
      AAA_16   17 ervrsgrp.elvllsGesGvGKsslvrellrale 49  
                  +rv ++ p ++ ll+G  G+G ssl+r ++  +e
  KOO23706.1 1705 SRVITQ-PrGCALLVGVGGSGRSSLARLAASMWE 1737
                  444444.349****************99886555 PP

  == domain 4  score: -1.8 bits;  conditional E-value: 6.6
      AAA_16   67 ipysa.laqalareellrqllde.....aesaeleawrekleeala...avpelagaea....srllellkrl 126 
                  + +++ l+qa+   +  ++ll+e     a   ++++ +++  ++ a   +v++ a a+a    ++l e++ ++
  KOO23706.1 1985 TKLQPvLVQAA---KDTTKLLEEvsvdqA---NADEVKQRVAKEEAavgEVAKEAQAIAadakRDLDEAMPAF 2051
                  44455566666...333444444343222...22223333333223233333333333333346666666665 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.3   0.0     0.042        23      12      47 ..     796     822 ..     793     840 .. 0.82
   2 ?    1.4   0.0      0.64   3.5e+02       9      56 ..    1074    1120 ..    1070    1140 .. 0.69
   3 !   13.9   0.0   9.3e-05      0.05       7      61 ..    1358    1412 ..    1353    1460 .. 0.67
   4 ?    2.0   0.0      0.42   2.3e+02       4      27 ..    1711    1734 ..    1708    1774 .. 0.88

  Alignments for each domain:
  == domain 1  score: 5.3 bits;  conditional E-value: 0.042
      AAA_22  12 GesGtGKTtllrrlleqldeeakaeeerpevvfvtl 47 
                 G++GtGKT + + l++ l          +++v +++
  KOO23706.1 796 GPAGTGKTETTKDLAKAL---------ARQCVVMNC 822
                 9***************99.........555555555 PP

  == domain 2  score: 1.4 bits;  conditional E-value: 0.64
      AAA_22    9 vvtGesGtGKTtllrrlleqldeeakaeeerpevvfvtlpsst..sskdl 56  
                  +v+G + tGKT+  ++l+  l +    ++ ++e  +++++++   ++k++
  KOO23706.1 1074 MVVGLTLTGKTMNTNMLAAALSQ---LKRDGDESPKYEVTKQHwlNPKSI 1120
                  799999*************9954...333444444555554444455555 PP

  == domain 3  score: 13.9 bits;  conditional E-value: 9.3e-05
      AAA_22    7 ilvvtGesGtGKTtllrrlleqldeeakaee.erpevvfvtlpsst.sskdllrell 61  
                   ++ +Ge+GtGK++l++ +l++l++++ a   +  ++ +++++ s  + ++ +++ll
  KOO23706.1 1358 NVMMVGETGTGKSVLVQGFLSRLPQQSPAPGsP--GFTSIQAAFSAqTAAKNMQDLL 1412
                  56789******************9887666653..3333333333332222223332 PP

  == domain 4  score: 2.0 bits;  conditional E-value: 0.42
      AAA_22    4 tagilvvtGesGtGKTtllrrlle 27  
                   +g+ +++G  G+G++ l+r  ++
  KOO23706.1 1711 PRGCALLVGVGGSGRSSLARLAAS 1734
                  689****************98665 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.1   0.0    0.0015      0.83       5      32 ..     796     823 ..     794     881 .. 0.82
   2 !   10.2   0.0    0.0014      0.77       1      68 [.    1359    1440 ..    1359    1454 .. 0.80
   3 ?    4.3   0.0     0.095        52       2      35 ..    1716    1749 ..    1715    1788 .. 0.75

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.0015
                 SSTTSSHHHHHHHHHHHHTHEEEEEETT CS
         AAA   5 GppGtGKTllakavakelgvefleisgs 32 
                 Gp GtGKT + k +ak l ++++ +++ 
  KOO23706.1 796 GPAGTGKTETTKDLAKALARQCVVMNCG 823
                 9*****************9999988874 PP

  == domain 2  score: 10.2 bits;  conditional E-value: 0.0014
                  EEEESSTTSSHHHHHHHHHHHH...THE......EEEEETTTCSSSSTTHHHHHHHHHHHHHHHTS......TSEEEEEETGG CS
         AAA    1 vllyGppGtGKTllakavakel...gve......fleisgsellskyvgesekkirelfkeakeka......kpsilfiDEid 68  
                  v+++G  GtGK+ l++   + l   + +      f +i+++   +   +++++ ++  +++++++       ++ ++f+D+i 
  KOO23706.1 1359 VMMVGETGTGKSVLVQGFLSRLpqqS-PapgspgFTSIQAAFSAQTAAKNMQDLLESKLDKLRKNLlgappgRQNVIFVDDIN 1440
                  6899*****************95540.14444557788777777778888888888888888888889889777*******96 PP

  == domain 3  score: 4.3 bits;  conditional E-value: 0.095
                  EEESSTTSSHHHHHHHHHHHHTHEEEEEETTTCS CS
         AAA    2 llyGppGtGKTllakavakelgvefleisgsell 35  
                  ll+G  G G+++la+  a+ +++e+l i+ ++  
  KOO23706.1 1716 LLVGVGGSGRSSLARLAASMWEMECLGIEITRTY 1749
                  89******************99999888877766 PP

>> Dynein_AAA_lid  Dynein heavy chain AAA lid domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.2   0.0   1.2e-08   6.5e-06      83     128 ..    1271    1318 ..    1252    1319 .. 0.88

  Alignments for each domain:
  == domain 1  score: 26.2 bits;  conditional E-value: 1.2e-08
  Dynein_AAA_lid   83 ldedsrekfdeflrel..lee.alklppeegtvyDyffdketgkWkpWe 128 
                      ++++sr++fd+++re   l+e +  +p +egtvyDy++++++g +++W+
      KOO23706.1 1271 CKDASRARFDKYVRECgiLKElDPTFP-TEGTVYDYCVSPDNGAFVSWA 1318
                      78899**********974443556666.********************7 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.0   0.2    0.0082       4.4      25      45 ..     796     816 ..     792     845 .. 0.83
   2 !    9.0   0.0    0.0019         1      15      99 ..    1353    1441 ..    1346    1449 .. 0.72
   3 ?    5.0   0.0     0.032        17      10      45 ..    1704    1739 ..    1701    1756 .. 0.89

  Alignments for each domain:
  == domain 1  score: 7.0 bits;  conditional E-value: 0.0082
      AAA_30  25 GpAGtGKttalkalreaweaa 45 
                 GpAGtGKt + k l++a++++
  KOO23706.1 796 GPAGTGKTETTKDLAKALARQ 816
                 9*************9999876 PP

  == domain 2  score: 9.0 bits;  conditional E-value: 0.0019
      AAA_30   15 tsgdrvavltGpAGtGKttalkalreaweaag.......grviglAptg.kaAkvLaeelgieastiakllkrlkgrarlepgtllivDEagm 99  
                   ++   ++++G  GtGK+ ++++    + ++        ++ i +A ++ +aAk++++ l+ + + + k l          +++++ vD + m
  KOO23706.1 1353 VDNSTNVMMVGETGTGKSVLVQGFLSRLPQQSpapgspgFTSIQAAFSAqTAAKNMQDLLESKLDKLRKNLLGAPP----GRQNVIFVDDINM 1441
                  445556889**************9655555534899**97777777665156777**9999888888877733332....4678888888777 PP

  == domain 3  score: 5.0 bits;  conditional E-value: 0.032
      AAA_30   10 vealltsgdrvavltGpAGtGKttalkalreaweaa 45  
                  + +++t+++ +a+l+G+ G+G + + + ++ +we +
  KOO23706.1 1704 ISRVITQPRGCALLVGVGGSGRSSLARLAASMWEME 1739
                  66899999*************************987 PP

>> RNA_helicase  RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.9   0.0    0.0002      0.11       5      86 ..     796     878 ..     794     898 .. 0.78
   2 ?    0.6   0.0       1.3   7.2e+02       1      28 [.    1073    1099 ..    1073    1127 .. 0.73
   3 ?    7.0   0.0     0.014       7.7       1      30 [.    1359    1388 ..    1359    1408 .. 0.82

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 0.0002
  RNA_helicase   5 GpsgeGKStlakeLakallkklklkkkdsvysrnpeddfwdgYt.gqevvvidDfgqvkdeenps.dlaelirlvsstpyplnm 86 
                   Gp+g+GK+ ++k+Lakal+++    + +   + ++   f++g   + +  ++d+f+++  e   s + ++++ +++ ++++++ 
    KOO23706.1 796 GPAGTGKTETTKDLAKALARQCVVMNCGPDLTVPTMGRFFSGLAqSGAWACFDEFNRIDIE-VLSvIAQQVLTIMEAVKMKVER 878
                   9******************9997777677778899********945566777778777655.5555888888888888888765 PP

  == domain 2  score: 0.6 bits;  conditional E-value: 1.3
  RNA_helicase    1 iwlyGpsgeGKStlakeLakallkklkl 28  
                    ++++G + +GK++ ++ La+al++    
    KOO23706.1 1073 VMVVGLTLTGKTMNTNMLAAALSQLK-R 1099
                    578899999************99544.2 PP

  == domain 3  score: 7.0 bits;  conditional E-value: 0.014
  RNA_helicase    1 iwlyGpsgeGKStlakeLakallkklklkk 30  
                    ++++G++g+GKS+l++ + ++l +++  + 
    KOO23706.1 1359 VMMVGETGTGKSVLVQGFLSRLPQQSPAPG 1388
                    6899*************9999988875554 PP

>> HrpB7  Bacterial type III secretion protein (HrpB7)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.5   1.2       2.7   1.5e+03      21     100 ..      93     174 ..      87     185 .. 0.77
   2 ?    3.8   2.9      0.12        67      72     144 ..    1968    2047 ..    1963    2049 .. 0.75
   3 !   18.2   2.6   4.7e-06    0.0025      68     137 ..    2153    2225 ..    2123    2231 .. 0.84

  Alignments for each domain:
  == domain 1  score: -0.5 bits;  conditional E-value: 2.7
       HrpB7  21 raeleaaraalaaaeaalaaa.qaqveaardavraheerld.dlttgsspfsiadylacrayrdvlegrvraaeaelaaarq 100
                 +++l++ar++l +   +   a  +++e+  + +++  ++l+ dl++  +++s  dy       +v+ +r++a ++++aa  +
  KOO23706.1  93 KDDLKEARDKLTEQTGSADGAvGEKMEQMVATLNKSIANLNeDLVSIMASLSTGDYVDPTVDPKVVLERLHATKEQMAAIAE 174
                 7999999999988777665441466777777777776666426888889999999999999999999999999999998765 PP

  == domain 2  score: 3.8 bits;  conditional E-value: 0.12
       HrpB7   72 adylacrayrdvlegrvraaeaelaaarqaldaaedava.......atarkiaRndaqidacrerierlrraaerareda 144 
                  ++++  +a++d +++++++++  l++a +   +  ++v+       ++++++a+ +a++  +++ +++++++a+r  ++a
  KOO23706.1 1968 NKLIETNAVVDTMKDELTKLQPVLVQAAKDTTKLLEEVSvdqanadEVKQRVAKEEAAVGEVAKEAQAIAADAKRDLDEA 2047
                  66777888889999999988888888777666665555422222227889999999999999999999999999988887 PP

  == domain 3  score: 18.2 bits;  conditional E-value: 4.7e-06
       HrpB7   68 pfsiadylacrayrdvle...grvraaeaelaaarqaldaaedavaatarkiaRndaqidacrerierlrraa 137 
                  ++ + ++ ++ ++ + +e   +++ aa+++la  ++ l++++da+++++r++a ++ ++d +++++++l++++
  KOO23706.1 2153 CMWVRAMDTYARVAKTVEpkkAKLLAAQKQLADSQAMLKEKQDALKEVERRVAGLKKKLDDTQRKAKQLEEQE 2225
                  66667777777776666522267889*******************************************9875 PP

>> TsaE  Threonylcarbamoyl adenosine biosynthesis protein TsaE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.1   0.1      0.33   1.8e+02      26      46 ..     796     816 ..     788     822 .. 0.87
   2 ?    1.0   0.0      0.75   4.1e+02      19      62 ..    1070    1116 ..    1053    1130 .. 0.74
   3 !   13.3   0.1   0.00011     0.062      18      57 ..    1352    1396 ..    1340    1406 .. 0.80

  Alignments for each domain:
  == domain 1  score: 2.1 bits;  conditional E-value: 0.33
                 ESTTSSHHHHHHHHHHHTT-- CS
        TsaE  26 GdLGaGKTtlvrglakalgve 46 
                 G+ G+GKT  ++ lakal  +
  KOO23706.1 796 GPAGTGKTETTKDLAKALARQ 816
                 899*************99655 PP

  == domain 2  score: 1.0 bits;  conditional E-value: 0.75
                  TEEEEEEESTTSSHHHHHHHHHHHTT-.-..----TTTTSEEEEEE. CS
        TsaE   19 gdvilLeGdLGaGKTtlvrglakalgv.e..evkSPTFtlveeYele 62  
                  ++ ++  G   +GKT+ +  la+al   +    +SP + + +++ l+
  KOO23706.1 1070 RHGVMVVGLTLTGKTMNTNMLAAALSQlKrdGDESPKYEVTKQHWLN 1116
                  344777788889***********99653466699*****99998664 PP

  == domain 3  score: 13.3 bits;  conditional E-value: 0.00011
                  H...TEEEEEEESTTSSHHHHHHHHHHHTT--..----TTTTSEE CS
        TsaE   18 l...gdvilLeGdLGaGKTtlvrglakalgve..evkSPTFtlve 57  
                  l   ++ +++ G+ G+GK++lv+g+++ l  +  +  SP Ft ++
  KOO23706.1 1352 LvdnSTNVMMVGETGTGKSVLVQGFLSRLPQQspAPGSPGFTSIQ 1396
                  33435569*********************88778899****9776 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.0       7.5   4.1e+03      72     110 ..     358     395 ..     334     422 .. 0.76
   2 ?    1.6   0.1      0.41   2.2e+02       7      28 ..     796     817 ..     795     821 .. 0.92
   3 !   13.3   0.0   0.00011     0.058       3      67 ..    1359    1421 ..    1357    1427 .. 0.91
   4 ?   -1.8   0.1       4.7   2.6e+03       4      28 ..    1716    1740 ..    1714    1743 .. 0.86

  Alignments for each domain:
  == domain 1  score: -2.5 bits;  conditional E-value: 7.5
                 CHHHHCCSCCCEEEEEE-STT-SS-TCH.........HH CS
       NACHT  72 vwavllelperlLlilDglDelvtdlgqkekqpvrtlLs 110
                 +++ l  + +   +i+ g+De+v +l+   +  ++t L+
  KOO23706.1 358 GFVTLNHRDQADIFIVGGIDEVVVQLED-SQVGLQTILA 395
                 4555666667777*********999988.6666666665 PP

  == domain 2  score: 1.6 bits;  conditional E-value: 0.41
                 C-TTTCHHHHHHHHHHHHCTS- CS
       NACHT   7 GeaGsGKTtLlqklalawaegk 28 
                 G+aG GKT   + la a+a+++
  KOO23706.1 796 GPAGTGKTETTKDLAKALARQC 817
                 99****************9987 PP

  == domain 3  score: 13.3 bits;  conditional E-value: 0.00011
                  EEEEC-TTTCHHHHHHHHHHHHCTS-SCCCC-SEEEEEETTTTTTS-...-HCHHHCCCCTS--S CS
       NACHT    3 vilqGeaGsGKTtLlqklalawaegklpqgafklvFflslrelsrsgnarsladllfsqlpepaa 67  
                  v++ Ge G GK++L+q++ + + ++ +  g  +  F   ++++s +++a  ++dll s+l+++ +
  KOO23706.1 1359 VMMVGETGTGKSVLVQGFLSRLPQQSPAPG--SPGFTSIQAAFSAQTAAKNMQDLLESKLDKLRK 1421
                  7899********************998885..8999999*******999*******999988765 PP

  == domain 4  score: -1.8 bits;  conditional E-value: 4.7
                  EEEC-TTTCHHHHHHHHHHHHCTS- CS
       NACHT    4 ilqGeaGsGKTtLlqklalawaegk 28  
                  +l G  GsG + L++  a+ w  ++
  KOO23706.1 1716 LLVGVGGSGRSSLARLAASMWEMEC 1740
                  689***********99999987665 PP

>> DUF815  Protein of unknown function (DUF815)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.0   0.00046      0.25      52      80 ..    1355    1383 ..    1348    1442 .. 0.86
   2 ?    1.2   0.0      0.32   1.7e+02      56      82 ..    1715    1741 ..    1705    1752 .. 0.79

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00046
      DUF815   52 pannvLLwGarGtGKSslvkallneyaee 80  
                  ++ nv+++G+ GtGKS lv+  l+++ ++
  KOO23706.1 1355 NSTNVMMVGETGTGKSVLVQGFLSRLPQQ 1383
                  578*****************999987766 PP

  == domain 2  score: 1.2 bits;  conditional E-value: 0.32
      DUF815   56 vLLwGarGtGKSslvkallneyaeegL 82  
                  +LL+G  G+G+Ssl + + +  + e L
  KOO23706.1 1715 ALLVGVGGSGRSSLARLAASMWEMECL 1741
                  79************9987776666555 PP

>> Sigma54_activat  Sigma-54 interaction domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.0       5.1   2.8e+03      19      44 ..    1067    1092 ..    1055    1130 .. 0.60
   2 ?   11.8   0.0   0.00026      0.14      16      44 ..    1350    1378 ..    1342    1419 .. 0.67

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 5.1
                       CTSSS-EEEECSTTSSHHHHHHHHHH CS
  Sigma54_activat   19 aktdlsvlitGesGtGKellaraihe 44  
                       +  +  v+++G + tGK++  +++ +
       KOO23706.1 1067 MLVRHGVMVVGLTLTGKTMNTNMLAA 1092
                       4556789**********987776655 PP

  == domain 2  score: 11.8 bits;  conditional E-value: 0.00026
                       HHHCTSSS-EEEECSTTSSHHHHHHHHHH CS
  Sigma54_activat   16 kkvaktdlsvlitGesGtGKellaraihe 44  
                       k +++++++v+++Ge+GtGK++l +   +
       KOO23706.1 1350 KVLVDNSTNVMMVGETGTGKSVLVQGFLS 1378
                       56678899**************9987655 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   0.0    0.0024       1.3       4      63 ..     795     864 ..     795     896 .. 0.60
   2 ?    0.4   0.0       1.7     9e+02       2      29 ..    1716    1750 ..    1716    1788 .. 0.76

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 0.0024
      AAA_18   4 tGtpGvGKttlakeLskrlgf...............gvnlrdvakenglllevdpe............aldeskrldedkldkllda 63 
                 +G++G+GKt+ +k L+k l+                                                 +de++r+d+++l ++ ++
  KOO23706.1 795 AGPAGTGKTETTKDLAKALARqcvvmncgpdltvptM------------G-----RffsglaqsgawaCFDEFNRIDIEVLSVIAQQ 864
                 69***************98434453333333332221............1.....01122233344444455566666666555555 PP

  == domain 2  score: 0.4 bits;  conditional E-value: 1.7
      AAA_18    2 lltGtpGvGKttlakeLskrlgf.......gvnlr 29  
                  ll G+ G+G ++la+  +++ ++        + + 
  KOO23706.1 1716 LLVGVGGSGRSSLARLAASMWEMeclgieiTRTYD 1750
                  589*************9988555556445544444 PP

>> T2SSE  Type II/IV secretion system protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.1       5.5     3e+03     135     154 ..     795     814 ..     795     819 .. 0.79
   2 ?    1.9   0.0      0.18        96     102     155 ..    1044    1096 ..    1024    1102 .. 0.71
   3 ?    7.9   0.0    0.0026       1.4     119     156 ..    1346    1383 ..    1326    1386 .. 0.88
   4 ?   -1.1   0.0       1.4   7.6e+02     114     147 ..    1700    1730 ..    1673    1739 .. 0.75

  Alignments for each domain:
  == domain 1  score: -3.0 bits;  conditional E-value: 5.5
       T2SSE 135 sGgTgsGKttllyallkein 154
                 +G+ g+GKt ++  l k ++
  KOO23706.1 795 AGPAGTGKTETTKDLAKALA 814
                 69*******99887766665 PP

  == domain 2  score: 1.9 bits;  conditional E-value: 0.18
       T2SSE  102 eltlddlgaeealkekiaevlrkavrerglilvsGgTgsGKttllyallkeink 155 
                  ++tl+ ++  ++  +k+ ++ ++ + ++g ++v G T +GKt  +++l + + +
  KOO23706.1 1044 QITLNGMQPVPSYVAKVIQLFETMLVRHG-VMVVGLTLTGKTMNTNMLAAALSQ 1096
                  55555555555556677777777755555.5677*********99988776654 PP

  == domain 3  score: 7.9 bits;  conditional E-value: 0.0026
       T2SSE  119 aevlrkavrerglilvsGgTgsGKttllyallkeinks 156 
                  + +l+  v +  ++++ G Tg+GK++l+   l+ ++++
  KOO23706.1 1346 EFLLKVLVDNSTNVMMVGETGTGKSVLVQGFLSRLPQQ 1383
                  5578889999******************9999998876 PP

  == domain 4  score: -1.1 bits;  conditional E-value: 1.4
       T2SSE  114 lkekiaevlrkavrerglilvsGgTgsGKttlly 147 
                    ++i++v+ ++   rg  l+ G  gsG++ l+ 
  KOO23706.1 1700 HLARISRVITQP---RGCALLVGVGGSGRSSLAR 1730
                  3488999999**...**************98764 PP

>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.0   0.0    0.0036       1.9       8      34 ..    1353    1379 ..    1349    1414 .. 0.87
   2 ?    0.6   0.0       1.4   7.6e+02      14      34 ..    1715    1735 ..    1708    1795 .. 0.87
   3 ?   -1.5   0.5       6.1   3.3e+03      51     116 ..    2191    2263 ..    2113    2265 .. 0.67

  Alignments for each domain:
  == domain 1  score: 9.0 bits;  conditional E-value: 0.0036
                  EETTSEEEEEESTTSSHHHHHHHHTTS CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran    8 lkegekvaivGenGaGKStLlkllagl 34  
                  + +++ v +vGe+G+GKS L++ ++  
  KOO23706.1 1353 VDNSTNVMMVGETGTGKSVLVQGFLSR 1379
                  677899**************9876655 PP

  == domain 2  score: 0.6 bits;  conditional E-value: 1.4
                  EEEEESTTSSHHHHHHHHTTS CS
                  xxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran   14 vaivGenGaGKStLlkllagl 34  
                    +vG  G+G S+L++l a +
  KOO23706.1 1715 ALLVGVGGSGRSSLARLAASM 1735
                  579***********9987765 PP

  == domain 3  score: -1.5 bits;  conditional E-value: 6.1
                  G...B-HHHCCHCEEEE-SS..--S-TTSBHHHH..HHHTCHHHHHHHSTTGGTTCBGESTTSGGS-HHHHHH CS
                  x...xxxxxxxxxxxxxxxx..xxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran   51 e...qeleslrkeigvlpqe..pqlfpeltvren..esdeeiekalsklglkelkdtvvksspssLSgGqkqr 116 
                  +   + l++++++++ l+++  ++  + ++++e+  + ++++e+a + +g  + ++t++++    L +Gq+  
  KOO23706.1 2191 KekqDALKEVERRVAGLKKKldDTQRKAKQLEEQeaDTKVKLERADKLVGGLGSEKTRWEQLCVRLNQGQRNV 2263
                  1333445555555555555542222222224444555666688888888888888888877778888888865 PP

>> AAA_19  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.1   0.1       0.1        55      17      37 ..     796     816 ..     793     824 .. 0.85
   2 ?    5.2   0.0     0.045        25      10      63 ..    1356    1413 ..    1351    1470 .. 0.86

  Alignments for each domain:
  == domain 1  score: 4.1 bits;  conditional E-value: 0.1
      AAA_19  17 aGpGtGKTrvlkhivallvel 37 
                 +++GtGKT+++k   + l ++
  KOO23706.1 796 GPAGTGKTETTKDLAKALARQ 816
                 789*********999988775 PP

  == domain 2  score: 5.2 bits;  conditional E-value: 0.045
      AAA_19   10 ekvllvtaGpGtGKTrvlkhivallvelggvkp....eeillvaftgrAakelrerla 63  
                  ++++++++  GtGK+ ++++ ++ l ++   +      +i ++  ++ Aak++++ l+
  KOO23706.1 1356 STNVMMVGETGTGKSVLVQGFLSRLPQQSPAPGspgfTSIQAAFSAQTAAKNMQDLLE 1413
                  6788999******************99996654778556666666778999*999774 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.0   0.0     0.009       4.9      19      39 ..    1353    1373 ..    1345    1380 .. 0.82
   2 ?    2.6   0.0       0.2   1.1e+02      20      38 ..    1710    1728 ..    1701    1729 .. 0.85

  Alignments for each domain:
  == domain 1  score: 7.0 bits;  conditional E-value: 0.009
      AAA_29   19 idlkgatlltGpsGsGKSTll 39  
                  +d + +++++G++G+GKS l+
  KOO23706.1 1353 VDNSTNVMMVGETGTGKSVLV 1373
                  4555589************98 PP

  == domain 2  score: 2.6 bits;  conditional E-value: 0.2
      AAA_29   20 dlkgatlltGpsGsGKSTl 38  
                  +++g  ll+G  GsG S+l
  KOO23706.1 1710 QPRGCALLVGVGGSGRSSL 1728
                  57899************98 PP

>> TniB  Bacterial TniB protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.0       2.5   1.3e+03      36      58 ..    1071    1093 ..    1058    1129 .. 0.71
   2 ?    9.6   0.0     0.001      0.57      35      64 ..    1356    1385 ..    1344    1423 .. 0.77

  Alignments for each domain:
  == domain 1  score: -1.4 bits;  conditional E-value: 2.5
        TniB   36 pnlllvGdsnnGKtmivekFarl 58  
                  + +++vG + +GKtm  +  a+ 
  KOO23706.1 1071 HGVMVVGLTLTGKTMNTNMLAAA 1093
                  6799**********987776644 PP

  == domain 2  score: 9.6 bits;  conditional E-value: 0.001
        TniB   35 mpnlllvGdsnnGKtmivekFarlhppekd 64  
                    n+++vG++ +GK+++v+ F ++ p+++ 
  KOO23706.1 1356 STNVMMVGETGTGKSVLVQGFLSRLPQQSP 1385
                  479*******************99988754 PP

>> Self-incomp_S1  Plant self-incompatibility protein S1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.2   0.00052      0.28       9      58 ..     703     753 ..     698     766 .. 0.89

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.00052
  Self-incomp_S1   9 gngkkLkvhCkskdddlgvhtlkpgeefsfsfkenf.fgttlffCefrwgk 58 
                     g + +L vhC+  + +l ++++ + +ef+++ + ++ + ++   C +r+++
      KOO23706.1 703 GAKLTLDVHCRDTNSELVHKKVGWVNEFEWQKQLRYqWDEEVDDCALRQTN 753
                     77899****************************9997899999***99987 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.1   0.0      0.18     1e+02       6      26 ..     796     818 ..     795     822 .. 0.85
   2 ?    6.7   0.1     0.014       7.6       2      24 ..    1359    1381 ..    1359    1386 .. 0.90
   3 ?   -2.5   0.0       9.5   5.2e+03       3      19 ..    1716    1732 ..    1715    1747 .. 0.83

  Alignments for each domain:
  == domain 1  score: 3.1 bits;  conditional E-value: 0.18
      AAA_33   6 GlpGsGKstlaerllkklg..av 26 
                 G++G+GK+   + l+k+l+  +v
  KOO23706.1 796 GPAGTGKTETTKDLAKALArqCV 818
                 9***************9986544 PP

  == domain 2  score: 6.7 bits;  conditional E-value: 0.014
      AAA_33    2 vllvGlpGsGKstlaerllkklg 24  
                  v++vG  G+GKs l+++ l +l+
  KOO23706.1 1359 VMMVGETGTGKSVLVQGFLSRLP 1381
                  89**************9988775 PP

  == domain 3  score: -2.5 bits;  conditional E-value: 9.5
      AAA_33    3 llvGlpGsGKstlaerl 19  
                  llvG+ GsG s la+  
  KOO23706.1 1716 LLVGVGGSGRSSLARLA 1732
                  68***********9865 PP

>> Mg_chelatase  Magnesium chelatase, subunit ChlI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.4       3.2   1.7e+03      28      47 ..     795     814 ..     780     817 .. 0.79
   2 ?    1.7   0.0      0.26   1.4e+02      22      52 ..    1070    1100 ..    1065    1121 .. 0.82
   3 ?    9.2   0.0    0.0014      0.74      16      51 ..    1350    1385 ..    1343    1411 .. 0.80
   4 ?   -3.2   0.1       8.1   4.4e+03      26      42 ..    1716    1732 ..    1714    1736 .. 0.85

  Alignments for each domain:
  == domain 1  score: -1.9 bits;  conditional E-value: 3.2
  Mg_chelatase  28 vGppGsGKtmlakrlpsllp 47 
                   +Gp+G+GKt   k l++ l+
    KOO23706.1 795 AGPAGTGKTETTKDLAKALA 814
                   5899*****99998887765 PP

  == domain 2  score: 1.7 bits;  conditional E-value: 0.26
  Mg_chelatase   22 gHnlllvGppGsGKtmlakrlpsllpplsee 52  
                    +H +++vG   +GKtm  + l++ l++l+++
    KOO23706.1 1070 RHGVMVVGLTLTGKTMNTNMLAAALSQLKRD 1100
                    699************9999999988888754 PP

  == domain 3  score: 9.2 bits;  conditional E-value: 0.0014
  Mg_chelatase   16 eiaaaGgHnlllvGppGsGKtmlakrlpsllpplse 51  
                    ++ +  + n+++vG  G+GK++l + + s lp+ s 
    KOO23706.1 1350 KVLVDNSTNVMMVGETGTGKSVLVQGFLSRLPQQSP 1385
                    555666789****************99999998775 PP

  == domain 4  score: -3.2 bits;  conditional E-value: 8.1
  Mg_chelatase   26 llvGppGsGKtmlakrl 42  
                    llvG  GsG++ la+  
    KOO23706.1 1716 LLVGVGGSGRSSLARLA 1732
                    89***********9865 PP

>> DHR10  Designed helical repeat protein 10 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.2         8   4.4e+03      39      69 ..      75     106 ..      42     136 .. 0.61
   2 ?   -1.8   0.1       5.8   3.1e+03       3      46 ..     161     204 ..     160     212 .. 0.76
   3 ?    6.4   2.7     0.017       9.1      35      77 ..    1995    2037 ..    1984    2042 .. 0.87
   4 ?   14.7  11.0   4.4e-05     0.024      38     106 ..    2162    2230 ..    2147    2236 .. 0.90

  Alignments for each domain:
  == domain 1  score: -2.3 bits;  conditional E-value: 8
       DHR10  39 iklleeieaelakleeak.kklkelrdaleek 69 
                  +lle  e+++ + + +k ++lke+rd+l+e+
  KOO23706.1  75 YDLLEMYEVKVPAADAVKkDDLKEARDKLTEQ 106
                 34444444444444433303455555555555 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 5.8
       DHR10   3 slaeekeelaelErkarelqakidalqvvekdlrsciklleeie 46 
                 +l + ke++a+  +ka  ++a  +++++  ++++++ + + + e
  KOO23706.1 161 RLHATKEQMAAIAEKAEGYKAMQETFKQPPQEFKQLNDTMGQYE 204
                 56777888888888888888888888888888888888777655 PP

  == domain 3  score: 6.4 bits;  conditional E-value: 0.017
       DHR10   35 lrsciklleeieaelakleeakkklkelrdaleekeielrele 77  
                   + ++kllee+++++a  +e+k+++++ ++a+ e  +e++ + 
  KOO23706.1 1995 AKDTTKLLEEVSVDQANADEVKQRVAKEEAAVGEVAKEAQAIA 2037
                  57899**************************999888887665 PP

  == domain 4  score: 14.7 bits;  conditional E-value: 4.4e-05
       DHR10   38 ciklleeieaelakleeakkklkelrdaleekeielrelerkeerlqrqlenaeeklerlreqaeekre 106 
                    ++++++e + akl  a+k+l++ ++ l+ek+  l+e+er+ + l+++l+  ++k  +l+eq ++ + 
  KOO23706.1 2162 YARVAKTVEPKKAKLLAAQKQLADSQAMLKEKQDALKEVERRVAGLKKKLDDTQRKAKQLEEQEADTKV 2230
                  56889999999***************************************************9988765 PP

>> ATG16  Autophagy protein 16 (ATG16)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.2       2.6   1.4e+03      56      89 ..      90     135 ..      30     147 .. 0.46
   2 ?    2.9   1.4      0.21   1.1e+02      82     160 ..    1976    2033 ..    1922    2049 .. 0.55
   3 ?   11.5   5.1   0.00046      0.25      79     141 ..    2172    2234 ..    2127    2245 .. 0.59

  Alignments for each domain:
  == domain 1  score: -0.7 bits;  conditional E-value: 2.6
       ATG16  56 ksakekeasasq............snskqsakiqsleqklaqlree 89 
                 +++k ++++a++             ++k ++ +++l++ +a l+e+
  KOO23706.1  90 AVKKDDLKEARDklteqtgsadgaVGEKMEQMVATLNKSIANLNED 135
                 2333333333332223322222223334444444444444444444 PP

  == domain 2  score: 2.9 bits;  conditional E-value: 0.21
       ATG16   82 klaqlreelaelyksrgelaqrllelneelqkleeklkedeerlaeleaeraaletklkdreeelrekeklvqdlqDEl 160 
                                        + ++++el kl+  l + ++   +l +e+++ + + ++ +++++  e++v ++  E 
  KOO23706.1 1976 V---------------------VDTMKDELTKLQPVLVQAAKDTTKLLEEVSVDQANADEVKQRVAKEEAAVGEVAKEA 2033
                  2.....................333444444444444444444444444444444444444444444444444444443 PP

  == domain 3  score: 11.5 bits;  conditional E-value: 0.00046
       ATG16   79 leqklaqlreelaelyksrgelaqrllelneelqkleeklkedeerlaeleaeraaletklkd 141 
                   ++kl++ +++la+++    e ++ l+e++  ++ l++kl   +++ ++le++ a+ + kl++
  KOO23706.1 2172 KKAKLLAAQKQLADSQAMLKEKQDALKEVERRVAGLKKKLDDTQRKAKQLEEQEADTKVKLER 2234
                  444444444444444444444444444444444444444444444444444444444444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (3404 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1534  (0.0855597); expected 358.6 (0.02)
Passed bias filter:                      925  (0.0515924); expected 358.6 (0.02)
Passed Vit filter:                       150  (0.00836633); expected 17.9 (0.001)
Passed Fwd filter:                        69  (0.00384851); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              33  [number of targets reported over threshold]
# CPU time: 2.14u 0.38s 00:00:02.52 Elapsed: 00:00:00.60
# Mc/sec: 16980.80
//
Query:       KOO23707.1  [L=656]
Description: u5 small nuclear ribonucleoprotein 200 kda helicase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.5e-31  108.8   0.0    3.1e-30  104.6   0.0    2.6  2  Helicase_PWI  N-terminal helicase PWI domain
    1.2e-27   96.8   0.9    2.5e-27   95.8   0.9    1.5  1  DEAD          DEAD/DEAH box helicase
    3.5e-13   49.9   0.0    8.1e-13   48.7   0.0    1.6  1  ResIII        Type III restriction enzyme, res subunit
     0.0028   17.9   2.8     0.0029   17.9   0.1    2.4  3  AAA_22        AAA domain
  ------ inclusion threshold ------
       0.02   15.0   1.9        3.6    7.7   0.0    2.7  3  DUF148        Domain of unknown function DUF148
      0.044   14.1   0.4      0.044   14.1   0.4    1.7  2  AAA_19        AAA domain
      0.051   14.3   3.5       0.12   13.0   2.0    2.3  2  RsbRD_N       RsbT co-antagonist protein rsbRD N-terminal dom
        2.5    7.8   4.9        1.4    8.6   0.0    2.6  4  AAA_11        AAA domain


Domain annotation for each model (and alignments):
>> Helicase_PWI  N-terminal helicase PWI domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.1   0.0      0.19   4.3e+02      31      67 ..     128     167 ..     110     173 .. 0.72
   2 !  104.6   0.0   1.4e-33   3.1e-30       3     111 .]     183     289 ..     181     289 .. 0.97

  Alignments for each domain:
  == domain 1  score: 1.1 bits;  conditional E-value: 0.19
  Helicase_PWI  31 elaeevleiLkse..adelrelE.nkLvelldydkfdlik 67 
                     a+evl  Lk++  +d  r++E +kL++ l+ + f    
    KOO23707.1 128 GAADEVLACLKNDslTDPERKVEvEKLINHLGSEAFASLV 167
                   56789999999985545579999668*******9985433 PP

  == domain 2  score: 104.6 bits;  conditional E-value: 1.4e-33
  Helicase_PWI   3 delsvkeidafWLqrelkkiykDaeeaqelaeevleiLkseadelrelEnkLvelldydkfdliklllknrekivyctklaqaqseeekqeieeemk 99 
                   del++ +ida+WLqre+ k+++D+  aq++a +vl  L    de re+En+Lv lldydkf++i+lllk+r+ki  ct+laqaqse+e++++ +e  
    KOO23707.1 183 DELPIGSIDAYWLQRECGKYFGDPLVAQRTAVDVLTTLMLP-DE-RECENRLVVLLDYDKFEFIRLLLKHRWKIGCCTRLAQAQSEAERARLLAEFD 277
                   7899*************************************.88.**************************************************** PP

  Helicase_PWI 100 ekpeleeileel 111
                   ++++ +++++el
    KOO23707.1 278 THEATAAVVHEL 289
                   **9999999886 PP

>> DEAD  DEAD/DEAH box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   95.8   0.9   1.1e-30   2.5e-27       2     173 ..     425     601 ..     424     605 .. 0.84

  Alignments for each domain:
  == domain 1  score: 95.8 bits;  conditional E-value: 1.1e-30
                 HHHHHHHHHHH.TTCEEEEEESTTSSHHHHHHHHHHHHHHHS.......TTSTS-EEEEEESSHHHHHHHHHHHHHHTTTSTSEEEEEETTSSHHHHHH CS
                 xxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.......xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD   2 diQaeaiplil.gggdvlvaaeTGsGKTlaflipvlqivyet.......kgktgpkalivePtreLaeqtlnnlkkfkkyidlrvlliiggvaardqls 92 
                 ++Q+++++++l + +++l++a+TG+GKT ++++ +l+++  +          ++ k+++v+P+++L++++++n+ k+++  +++v  ++g+++    ++
  KOO23707.1 425 RVQSRVCKCALySAENMLICAPTGAGKTNVAMLTMLHEIGMHrspttgaVLLDAFKIVYVAPMKALVQEMVTNFGKRLEAFGITVRELTGDQQL--TKQ 521
                 689*****9997789*********************999666666666556666*************************999888866675444..455 PP

                 HHHTTCSEEEEEHHHHHHHH..HCTSSHCTTEEEEEEETHHHHHHTTTHHHHHHHHHHSHHHCTTSTTTSEEEEEESSBSHHH CS
                 xxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD  93 kldngvdivvgtpgrlddll..stgklnlsqvrflVlDEadrlldqgfsdfinrilnqlpqitcdgklqrqvivlSATlpkdv 173
                 ++ ++++++++tp+++d ++  s  +  ++ vr++++DE++ l d  +++ +++i++++ ++ +++++  +vi lSATlp ++
  KOO23707.1 522 QI-AETQLIITTPEKWDIITrkSGDRTYTQLVRLIIIDEIHLLHDH-RGPVLESIVARTIRQVETTQEMTRVIGLSATLP-NY 601
                 66.789***********998753333448889*************9.9******99988777777777788********9.44 PP

>> ResIII  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.7   0.0   3.6e-16   8.1e-13      22     170 ..     436     599 ..     415     600 .. 0.83

  Alignments for each domain:
  == domain 1  score: 48.7 bits;  conditional E-value: 3.6e-16
                 .TTSEEEEEESTTSTHHHHHHHHHHHH-S...............-EEEEESSHHHHHHHHHHGGGGTGG....GEEEESSS-B--.......-SEEEEE CS
      ResIII  22 krdkrglikmaTGtGKTlvaaklierllkkgkee..........kflflvprkslleqtleefkkflseaykeigkkvsgdkkkakekdstnkkilvtt 110
                 +  +++li ++TG+GKT va+ ++ +    ++            k++ ++p k+l++ + ++f k l+  +  +  +++gd++   ++++ ++++++tt
  KOO23707.1 436 YSAENMLICAPTGAGKTNVAMLTMLHEIGMHRSPttgavlldafKIVYVAPMKALVQEMVTNFGKRLEA-FGITVRELTGDQQLT-KQQIAETQLIITT 532
                 677899**************9999999887666699***************************999986.556899999999999.9************ PP

                 HHHHHHTH........HHHTTT-SEEEEETGGGTTS.T..........TTHHHHHT---SEEEEEESS-S CS
      ResIII 111 iqsldadseeeeeeseellrdrfdviiiDEaHrlgakk..........swreilekfkeavllglTATpe 170
                  ++ d +    ++  ++   +   +iiiDE H l++            ++r++    +   ++gl+AT++
  KOO23707.1 533 PEKWDIIT---RKSGDRTYTQLVRLIIIDEIHLLHDHRgpvlesivarTIRQVETTQEMTRVIGLSATLP 599
                 ********...5556666666667************8245555666669999888877799*******86 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   0.0         5   1.1e+04      53      70 ..     103     120 ..      79     136 .. 0.59
   2 ?   -2.8   0.1       3.1   6.9e+03      52      79 ..     291     321 ..     257     335 .. 0.43
   3 !   17.9   0.1   1.3e-06    0.0029       5     114 ..     438     576 ..     435     592 .. 0.66

  Alignments for each domain:
  == domain 1  score: -3.4 bits;  conditional E-value: 5
      AAA_22  53 skdllrellralglelka 70 
                  ++ +++ll+ + ++l +
  KOO23707.1 103 TRSAYEDLLSTISQQLGD 120
                 333444444444433333 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 3.1
      AAA_22  52 sskdllrellralglelka...erlsseell 79 
                 s ++  +e++ ++++   +   e++++++++
  KOO23707.1 291 SARTQTEEIFTQTKQLEARvrkETAELSRMR 321
                 2233333333333322222333445555555 PP

  == domain 3  score: 17.9 bits;  conditional E-value: 1.3e-06
      AAA_22   5 agilvvtGesGtGKTtllrrlleqldeeakaeeerpevv.fvtlpsst.....sskdllrellralglelka...................erlsseel 78 
                 a  +++++++G+GKT ++ +l++ +++     ++r+++   v l + +       k l +e++ ++g +l+a                   ++ ++   
  KOO23707.1 438 AENMLICAPTGAGKTNVA-MLTMLHEIG----MHRSPTTgAVLLDAFKivyvaPMKALVQEMVTNFGKRLEAfgitvreltgdqqltkqqiAETQLIIT 531
                 56789**********876.445544333....3344444344444444445557788999999999999999999999877777777766633333333 PP

      AAA_22  79 lealeqalrarav.......ielliiDEaqhlr..seealeeLrs 114
                     ++ + +++        ++l+iiDE++ l   +  +le ++ 
  KOO23707.1 532 TPEKWDIITRKSGdrtytqlVRLIIIDEIHLLHdhRGPVLESIVA 576
                 344444444444467777777***********6644888887743 PP

>> DUF148  Domain of unknown function DUF148
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.7   0.0    0.0016       3.6      32     101 ..      88     166 ..      79     172 .. 0.84
   2 ?    5.6   0.4    0.0076        17      52      81 ..     279     308 ..     260     323 .. 0.79
   3 ?   -2.9   0.0       3.3   7.3e+03      69      82 ..     509     522 ..     487     526 .. 0.53

  Alignments for each domain:
  == domain 1  score: 7.7 bits;  conditional E-value: 0.0016
      DUF148  32 gvtdeykefeakvkaqkeevkknvtavisnLs........svqekleaIldnkslTrkeqkeaieelkkqypke.vstl 101
                 g+td++  ++ + k+ ++++++  +++ ++L          + +++ a l+n+slT  e+k ++e+l + +  e +  l
  KOO23707.1  88 GLTDDIDSYRPRSKETRSAYEDLLSTISQQLGdqphdilrGAADEVLACLKNDSLTDPERKVEVEKLINHLGSEaFASL 166
                 78888888888888888999999999999998888888888999999********************999887755555 PP

  == domain 2  score: 5.6 bits;  conditional E-value: 0.0076
      DUF148  52 kknvtavisnLssvqekleaIldnkslTrk 81 
                 +++++av+ +L+s+ ++ e+I+  +++ ++
  KOO23707.1 279 HEATAAVVHELASARTQTEEIFTQTKQLEA 308
                 67899*****************99888655 PP

  == domain 3  score: -2.9 bits;  conditional E-value: 3.3
      DUF148  69 leaIldnkslTrke 82 
                 +++ + +++lT+++
  KOO23707.1 509 VRELTGDQQLTKQQ 522
                 44444455555555 PP

>> AAA_19  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.2       3.5   7.9e+03      68      83 ..     282     297 ..     253     343 .. 0.59
   2 ?   14.1   0.4     2e-05     0.044       9     122 ..     437     571 ..     427     582 .. 0.69

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 3.5
      AAA_19  68 eatTiHrlalldfddl 83 
                  a  +H+la   ++++
  KOO23707.1 282 TAAVVHELASARTQTE 297
                 2555565554322222 PP

  == domain 2  score: 14.1 bits;  conditional E-value: 2e-05
      AAA_19   9 kekvllvtaGpGtGKTrvlkhivallvelggvkp........eeillvaftgrAakelrerlaalgae..atTiHrlalldfddlltealelle..... 92 
                 +++++l+ a+ G GKT v +  + + + +++ +          +i+ va+ +  ++e+ ++  +  +e    T+ +l   + ++l++++ +  +     
  KOO23707.1 437 SAENMLICAPTGAGKTNVAMLTMLHEIGMHRSPTtgavlldaFKIVYVAPMKALVQEMVTNFGK-RLEafGITVREL--TGDQQLTKQQIAETQliitt 532
                 6789**************999999999998776699999999****************998822.222345677777..33333333333332244566 PP

      AAA_19  93 .........eaeeekklqeee.llivDEfqdvdelqyrLl 122
                          + + +++ ++   l+i+DE+  + +    +l
  KOO23707.1 533 pekwdiitrK-SGDRTYTQLVrLIIIDEIHLLHDHRGPVL 571
                 7777777752.33444434445999999887766555555 PP

>> RsbRD_N  RsbT co-antagonist protein rsbRD N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.0       1.3     3e+03      33      68 ..      99     134 ..      86     149 .. 0.67
   2 ?   13.0   2.0   5.5e-05      0.12      21      83 ..     262     326 ..     246     344 .. 0.85

  Alignments for each domain:
  == domain 1  score: -1.0 bits;  conditional E-value: 1.3
     RsbRD_N  33 seaelreqlrelldallaalaseqldleseeeeelr 68 
                 + +e+r++ ++ll+ + + l ++  d+ + + +e+ 
  KOO23707.1  99 RSKETRSAYEDLLSTISQQLGDQPHDILRGAADEVL 134
                 566778888888888876665433355555555554 PP

  == domain 2  score: 13.0 bits;  conditional E-value: 5.5e-05
     RsbRD_N  21 latypiesagllseaelreqlrelldallaalaseql..dleseeeeelrealdelsrsRarqgf 83 
                 +a+ + e+a+ll e +++e++++++++l++a +++++  +++++ e+ +r+  +elsr Ra+++ 
  KOO23707.1 262 QAQSEAERARLLAEFDTHEATAAVVHELASARTQTEEifTQTKQLEARVRKETAELSRMRAQAEG 326
                 4444467999*********************88877679999999999*************9865 PP

>> AAA_11  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.1       2.4   5.3e+03     126     150 ..      63      94 ..       9     127 .. 0.49
   2 ?    0.2   0.1      0.24   5.3e+02     100     182 ..     278     318 ..     212     346 .. 0.54
   3 ?    8.6   0.0   0.00063       1.4       2      73 ..     423     497 ..     422     513 .. 0.81
   4 ?   -2.6   0.1       1.7   3.9e+03     186     225 ..     516     559 ..     508     559 .. 0.54

  Alignments for each domain:
  == domain 1  score: -3.1 bits;  conditional E-value: 2.4
      AAA_11 126 akeiskeleklakelrafeeeeek.......e 150
                 a +++++++ + +  r+++++e+        +
  KOO23707.1  63 AGKKRRSEKGVIEVKRSKKDTETVlgltddiD 94 
                 33333333333333333333332233332222 PP

  == domain 2  score: 0.2 bits;  conditional E-value: 0.24
      AAA_11 100 iseavksvsleekvekrlekeekaqlakeiskeleklakelrafeeeeekeklkkskekskskleqerrklkkerkelskele 182
                 ++ea+ +v                                            ++ s++++ ++  ++ ++l++ +++   el 
  KOO23707.1 278 THEATAAVV------------------------------------------HELASARTQTEEIFTQTKQLEARVRKETAELS 318
                 222222222..........................................22222222222222222222222222222222 PP

  == domain 3  score: 8.6 bits;  conditional E-value: 0.00063
      AAA_11   2 lndsqreaiksalseseitliqGPPGtgKT.ktivellsqllsrrk..seeeksakpriLvCapSNaAvDeller 73 
                 ln+ q +  k al + e  li  P G gKT  + + +l+++  +r+    +      +i + ap  a v e++  
  KOO23707.1 423 LNRVQSRVCKCALYSAENMLICAPTGAGKTnVAMLTMLHEIGMHRSptTGAVLLDAFKIVYVAPMKALVQEMVTN 497
                 899999999999999999************666788888885443345677788888999999988888888865 PP

  == domain 4  score: -2.6 bits;  conditional E-value: 1.7
      AAA_11 186 esleeevldeaeivltTlsga...gskll.eklakkfdvviIDE 225
                 ++l+++ + e+++++tT  +    ++k+  +++++ ++++iIDE
  KOO23707.1 516 QQLTKQQIAETQLIITTPEKWdiiTRKSGdRTYTQLVRLIIIDE 559
                 56667777788888888544311112211022223577788887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (656 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       961  (0.0536003); expected 358.6 (0.02)
Passed bias filter:                      672  (0.0374812); expected 358.6 (0.02)
Passed Vit filter:                        78  (0.00435049); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.68u 0.31s 00:00:00.99 Elapsed: 00:00:00.45
# Mc/sec: 4348.81
//
Query:       KOO23708.1  [L=1359]
Description: u5 small nuclear ribonucleoprotein 200 kda helicase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
   2.4e-142  472.6   0.0    1.2e-86  290.1   0.0    2.3  2  Sec63       Sec63 Brl domain
    2.9e-18   66.3   0.0    6.5e-18   65.1   0.0    1.6  1  DEAD        DEAD/DEAH box helicase
    4.5e-12   46.3   0.0      3e-08   34.0   0.0    3.4  2  Helicase_C  Helicase conserved C-terminal domain
      3e-07   30.6   0.0    1.1e-06   28.8   0.0    1.8  2  ResIII      Type III restriction enzyme, res subunit
    0.00068   19.4   0.0       0.24   11.1   0.0    2.5  2  AAA_30      AAA domain
  ------ inclusion threshold ------
      0.015   15.9   0.0      0.062   13.9   0.0    2.0  1  HHH_5       Helix-hairpin-helix domain
      0.065   13.6   0.0       0.19   12.1   0.0    1.8  1  AAA_19      AAA domain


Domain annotation for each model (and alignments):
>> Sec63  Sec63 Brl domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  290.1   0.0   4.7e-90   1.2e-86       1     256 [.     280     583 ..     280     584 .. 0.98
   2 !  180.5   0.0   1.3e-56   3.4e-53       1     182 [.    1108    1357 ..    1108    1359 .] 0.96

  Alignments for each domain:
  == domain 1  score: 290.1 bits;  conditional E-value: 4.7e-90
                 ECHHHHHHHHHT--HHHHHHHHHHS-TT--HHHHHHHHHTSGGGGGS---TTHHHHHHHHHHTSSS--SSSTTSHHHHHHHHHHHHHTT---SSHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       Sec63   1 ptelGriaShYyisyetiklfneslkpnttlkdlLeilssasEFeeipvReeEkkelkkLlekvpikvkediespeaKvniLlqayisrlklegsdlvs 99 
                 pt+lGr+a++Yy+ ++ti+++ne lkp+ ++ +lL++++ +++F +i+vReeEk+el++L e+vp++vke++++p+aK+niLlqayis+lkleg++l s
  KOO23708.1 280 PTDLGRVAAYYYVPHKTISVYNEYLKPTLSDIELLRLFALSTDFANITVREEEKQELARLIERVPVPVKEHVDEPTAKTNILLQAYISQLKLEGFSLLS 378
                 89************************************************************************************************* PP

                 HHHHHHHHHHHHHHHHHHHHHHTTBHHHHHHHHHHHHHHHHTS-TT..................................................... CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..................................................... RF
       Sec63 100 DlkyilqnairilralveillskgwlslalslleLskmveqrlwds..................................................... 145
                 D++y++q+a r++r+l ei+l++gw+sla ++l+++km+++r+w                                                       
  KOO23708.1 379 DMVYVTQSAARLMRCLHEIVLKRGWASLADRVLSFCKMIDRRMWLAqtplrqfkgipediirkiekkdfpwerfydlqpqeigelvrfpkmgkmihrfv 477
                 ********************************************7779*************************************************** PP

                 ..S--EEEEEEECEBTTSEEEEEEEEEESSSS-SCTSSS-CH..TSBEEEEEEEEETTTTEEEEEEEEEESSTTTTTEEEEEEEEEEE-.SSCCEEEEE CS
                 ..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       Sec63 146 ..lPkleieaevqpitrsklrvevtiereeeeskpdfpwdkk..gksekfwlvvedsendellaikrvtlekkklastqevkleftvplsepgpkqltv 240
                   +P+le++a+vqpitr++lrve+t++       pdf++d k  g++e+f ++ved +++++l+++ ++l+  k a ++ ++l+ftvp+ +p+p+q+++
  KOO23708.1 478 hqFPRLELQAHVQPITRTVLRVELTLT-------PDFQFDPKvhGHAEAFHVLVEDVDQEHILHTETFLLKA-KFA-EDDHTLSFTVPIADPLPPQYYI 567
                 ***************************.......************************************55.455.59******************** PP

                 EEEESSSSS-EEEEEE CS
                 xxxxxxxxxxxxxxxx RF
       Sec63 241 rlisdswlgldqevti 256
                 r++sd+wlg++++ ++
  KOO23708.1 568 RVVSDRWLGSETTLPV 583
                 ************9987 PP

  == domain 2  score: 180.5 bits;  conditional E-value: 1.3e-56
                  ECHHHHHHHHHT--HHHHHHHHHHS-TT--HHHHHHHHHTSGGGGGS---TTHHHHHHHHHHTSSS--S.SSTTSHHHHHHHHHHHHHTT---SSHH CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       Sec63    1 ptelGriaShYyisyetiklfneslkpnttlkdlLeilssasEFeeipvReeEkkelkkLlekvpikvk.ediespeaKvniLlqayisrlklegsd 96  
                  p++lG+iaS+Yyi+y+t++lf +sl+++t+l++lLei++sasEFe +pvR  E+++l++L+ ++p k++ +++ +p++Kvn+Llq++++r +l+  +
  KOO23708.1 1108 PLNLGMIASYYYINYTTVELFASSLTATTKLRGLLEIVASASEFELLPVRLREDDTLAALAAHCPHKLEsPRFSDPHTKVNVLLQCHFGRRDLP-PE 1203
                  789*****************************************************************88************************.** PP

                  HHHHHHHHHHHHHHHHHHHHHHHHHTTBHHHHHHHHHHHHHHHHTS-TT................................................ CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx................................................ RF
       Sec63   97 lvsDlkyilqnairilralveillskgwlslalslleLskmveqrlwds................................................ 145 
                  l++Dl+  l++++++l+a+v++l+s gwl++al ++eL++m++q+lwd+                                                
  KOO23708.1 1204 LTADLHGTLEKVTKLLQAIVDVLSSSGWLAPALAAMELCQMCVQALWDRdpvllqlphvtreiamrakaagietvfdlmemdddervellamppahl 1300
                  ***********************************************999*********************************************** PP

                  .........S--EEEEEEE....CEBTTSEEEEEEEEEESSSS-S.......CTSSS CS
                  .........xxxxxxxxxx....xxxxxxxxxxxxxxxxxxxxxx.......xxxxx RF
       Sec63  146 .........lPkleieaev....qpitrsklrvevtiereeeesk.......pdfpw 182 
                           +P++e+++ev    ++ + ++++v +++ere ee++       p++p+
  KOO23708.1 1301 advarvcnrYPSVELAFEVedteDVSAGDTVTVLISLEREAEEQQgvpavhaPHYPK 1357
                  *******************9999999999999******8888554465566666665 PP

>> DEAD  DEAD/DEAH box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.1   0.0   2.5e-21   6.5e-18       2     159 ..     627     780 ..     626     796 .. 0.85

  Alignments for each domain:
  == domain 1  score: 65.1 bits;  conditional E-value: 2.5e-21
                 HHHHHHHHHHH.TTCEEEEEESTTSSHHHHHHHHHHHHHHHSTTSTS-EEEEEESSHHHHHHHHHHHHHHTTTSTSEEEEEETTSSHHHHHHHHHTTCS CS
                 xxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD   2 diQaeaiplil.gggdvlvaaeTGsGKTlaflipvlqivyetkgktgpkalivePtreLaeqtlnnlkkfkkyidlrvlliiggvaardqlskldngvd 99 
                 +iQ +++ ++  +++++lv a+ GsGKT ++ +++l+ ++   +k+  ++++++P+ ++ae+ + +++k++  ++++v++++g++a   +l+ l +++ 
  KOO23708.1 627 PIQTQTFSTLFhTDENCLVGAPSGSGKTVCAEFAILHMLM---TKPDGRCVYLAPLAAIAEERHADWTKRFGALGCTVEMLTGETAM--DLKLL-EKAT 719
                 89*****99985778*********************9997...59999************************999999977776555..78888.99** PP

                 EEEEEHHHHHHHH..HCTSSHCTTEEEEEEETHHHHHHTTTHHHHHHHHHHSHHHCTTSTTT CS
                 xxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD 100 ivvgtpgrlddll..stgklnlsqvrflVlDEadrlldqgfsdfinrilnqlpqitcdgklq 159
                 i+++tp+++d+l   ++++ n++ v +l  DE + +  +  ++ ++ ++++++  ++++++ 
  KOO23708.1 720 ILIATPQQWDHLSrrWKQRKNVQTVALLLCDELHLIGGE-PGPVLEIVISRMRYVSSQTESG 780
                 **********99988445558***************998.9999999999998777776644 PP

>> Helicase_C  Helicase conserved C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.0   0.0   1.2e-11     3e-08      15     111 .]      12     155 ..       3     155 .. 0.68
   2 !    7.9   0.0    0.0014       3.7      22     109 ..     896     989 ..     843     990 .. 0.82

  Alignments for each domain:
  == domain 1  score: 34.0 bits;  conditional E-value: 1.2e-11
                 TTSEEEEEESSHHHHHH...HHHH...............................HHHT.......TSTEEEESTTSTHHHHHHHHHHHHTTSSSEEEE CS
  Helicase_C  15 eggkilifvntidrlek...vkll...............................lekk.......gikvavlhgelpqnereeileqfnkgesdvLia 72 
                  ++++l+fv++++++ k   +  +                               +  +        + +a++h+ ++  +r  + + f +g+++vL++
  KOO23708.1  12 GKNQVLVFVHSRKECAKtakA--IrdtalqhdtlvdflredsasreilqteaeatK--NreladllPYGFAIHHAGMTRVDRTLVEDLFADGHIQVLVS 106
                 567888888888877444220..222222333333444555555555455444332..14466677899****************************** PP

                 SGGGTSSSTSTTESEEE....ESSSS......SSHHHHHHHHTTSSSTT CS
  Helicase_C  73 tdvaerGidipkvnlVi....nfdlp......rnvtsyiqriGRtgRag 111
                 t  ++ G+++p  +++i     +d+        ++ +++q+ GR+gR g
  KOO23708.1 107 TATLAWGVNLPAHTVIIkgtqVYDPEkgkwteLSMMDVMQMLGRAGRPG 155
                 ***********555555555555555666443346************75 PP

  == domain 2  score: 7.9 bits;  conditional E-value: 0.0014
                 EESSHHHHHHHHHHHHHTTSTEEEESTTSTHHHHHHHHHHHHTTSSSEEEESGGGTSSSTSTTESEEEESSSS...........SSHHHHHHHHTTSSS CS
  Helicase_C  22 fvntidrlekvklllekkgikvavlhgelpqnereeileqfnkgesdvLiatdvaerGidipkvnlVinfdlp...........rnvtsyiqriGRtgR 109
                 fv +i+++     l ++ g+    lh  l+++e  ++ + +  g ++vL+    +  ++ +p ++l i++d +           + +ts+ q++GR+ R
  KOO23708.1 896 FVAKIKDA---A-LSHTLGYGLGFLHEGLSHDEIAAVKALYATGAVQVLVVVYTLCWSLSLP-AHLTIIMDTQhfdgaehryvdYPITSILQMMGRACR 989
                 56666655...2.33444999999***********9999999*******************9.888888888877666655443335**********98 PP

>> ResIII  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.1       1.6   4.1e+03      47      82 ..       6      41 ..       4      68 .. 0.68
   2 !   28.8   0.0   4.3e-10   1.1e-06      21     146 ..     634     757 ..     609     780 .. 0.82

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 1.6
                HH-S.....-EEEEESSHHHHHHHHHHGGGGTGG.. CS
      ResIII 47 rllkkgkeekflflvprkslleqtleefkkflseay 82
                +++ +++++++l++v++++ + +t +++++++ +++
  KOO23708.1  6 KCHAQAGKNQVLVFVHSRKECAKTAKAIRDTALQHD 41
                567777888999999999999999888877776654 PP

  == domain 2  score: 28.8 bits;  conditional E-value: 4.3e-10
                 .....TTSEEEEEESTTSTHHHHH.HHHHHHH-S.....-EEEEESSHHHHHHHHHHGGGGTGG....GEEEESSS-B--.......-SEEEEEHHHHH CS
      ResIII  21 s...krdkrglikmaTGtGKTlva.aklierllkkgkeekflflvprkslleqtleefkkflseaykeigkkvsgdkkkakekdstnkkilvttiqsld 115
                 s   + d++ l+ ++ G+GKT++a +++   l++k +  +++ l+p  ++ e    +++k +      + + ++g++ +   k  +++ il++t q+ d
  KOO23708.1 634 StlfHTDENCLVGAPSGSGKTVCAeFAILHMLMTK-PDGRCVYLAPLAAIAEERHADWTKRFGALG-CTVEMLTGETAMD-LKLLEKATILIATPQQWD 729
                 03448899999*************66666666655.778*********************999864.3788899999998.88899************* PP

                 HTH........HHHTTT-SEEEEETGGGTTS CS
      ResIII 116 adseeeeeeseellrdrfdviiiDEaHrlga 146
                   s   +++++++  ++  ++++DE H +g+
  KOO23708.1 730 HLS---RRWKQRKNVQTVALLLCDELHLIGG 757
                 ***...99*******************8776 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.1   0.0   9.6e-05      0.24       3      97 ..     626     752 ..     624     759 .. 0.72
   2 !    5.8   0.0     0.004        10      43      79 ..     777     813 ..     742     834 .. 0.80

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 9.6e-05
      AAA_30   3 naeQaaavealltsgdrvavltGpAGtGKttalkal.reaweaa.ggrviglAptgkaAkvLa....eelgieastiakllkrlk.............. 81 
                 n+ Q + + +l ++++  +++ +p G+GKt   + +  +++ ++  gr + lAp ++ A++      + +g+ + t++ l+ +++              
  KOO23708.1 626 NPIQTQTFSTLFHTDE-NCLVGAPSGSGKTVCAEFAiLHMLMTKpDGRCVYLAPLAAIAEERHadwtKRFGALGCTVEMLTGETAmdlkllekatilia 723
                 6778888988888776.78888999*****9988654555555558*************9966445457777778888887777776666666667777 PP

      AAA_30  82 .............grarlepgtllivDEa 97 
                              +r+++++  ll+ DE 
  KOO23708.1 724 tpqqwdhlsrrwkQRKNVQTVALLLCDEL 752
                 77777777766665556666677777775 PP

  == domain 2  score: 5.8 bits;  conditional E-value: 0.004
      AAA_30  43 eaaggrviglAptgkaAkvLaeelgieastiakllkr 79 
                 +++g r+++lA++ + Ak+L+e lg +++ i ++ ++
  KOO23708.1 777 TESGLRIVALASSLASAKDLGEWLGCPSAAIFNFHSN 813
                 4459**********************99998777655 PP

>> HHH_5  Helix-hairpin-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.0   2.4e-05     0.062       4      36 ..    1256    1288 ..    1254    1297 .. 0.86

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 2.4e-05
                  HHTSTT--HHHHHHHHTTT--SHHHHHHS-HHH CS
       HHH_5    4 LlsvsGiGpktAlallsaGiesvedlaaadvee 36  
                  Ll+++ + +++A++   aGie+v dl+++d +e
  KOO23708.1 1256 LLQLPHVTREIAMRAKAAGIETVFDLMEMDDDE 1288
                  899**************************9876 PP

>> AAA_19  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   7.3e-05      0.19       9     112 ..     639     753 ..     630     770 .. 0.73

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 7.3e-05
      AAA_19   9 kekvllvtaGpGtGKTrvlkhivallvelggvkpeeillvaf.tgrAakelrerlaalgaeatTiHrlal...ldfddlltealelle........... 92 
                 +++++lv a+ G+GKT + + ++ +++ ++     +++ +a+ +  A ++ ++ ++ +ga  +T+  l+    +   dl+     lle           
  KOO23708.1 639 TDENCLVGAPSGSGKTVCAEFAILHMLMTKPD--GRCVYLAPlAAIAEERHADWTKRFGALGCTVEMLTGetaM---DLK-----LLEkatiliatpqq 727
                 67899**********************99955..5666666526678888889999999999999988553332...222.....22222233457777 PP

      AAA_19  93 ......eaeeekklqeeellivDEfq 112
                       + +++k++q  +ll+ DE  
  KOO23708.1 728 wdhlsrRWKQRKNVQTVALLLCDELH 753
                 77777655567777666688889875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1359 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       640  (0.0356964); expected 358.6 (0.02)
Passed bias filter:                      593  (0.0330749); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.89u 0.33s 00:00:01.22 Elapsed: 00:00:00.48
# Mc/sec: 8598.58
//
Query:       KOO23709.1  [L=444]
Description: flagellar associated protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (444 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       358  (0.0199677); expected 358.6 (0.02)
Passed bias filter:                      313  (0.0174578); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.48u 0.26s 00:00:00.74 Elapsed: 00:00:00.43
# Mc/sec: 3130.25
//
Query:       KOO23710.1  [L=885]
Description: hypothetical protein Ctob_005067 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.8e-30  104.9   0.1    5.1e-30  104.1   0.1    1.5  1  ABC1      ABC1 family
     0.0054   16.1   0.0      0.068   12.5   0.0    2.1  2  Pkinase   Protein kinase domain
     0.0097   15.9   9.7      0.016   15.2   0.1    3.5  4  APH       Phosphotransferase enzyme family


Domain annotation for each model (and alignments):
>> ABC1  ABC1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  104.1   0.1   8.5e-34   5.1e-30       1     119 []     216     341 ..     216     341 .. 0.91

  Alignments for each domain:
  == domain 1  score: 104.1 bits;  conditional E-value: 8.5e-34
        ABC1   1 eelgkkleeiFaefdeePiAaASiaqVhrAklk.sgeeVavKvqrpgvkkriksDlellkllakllk....kflkelrldleelvdefskslleEldfe 94 
                 +elg++l ++F+ef e++ AaAS+aqV+rAkl+ +ge VavKvqrpgv+  +++Dl++l+++a++++    +f +++r+++ +l++e +   + Eldf 
  KOO23710.1 216 KELGRPLMDVFEEFGENAAAAASLAQVYRAKLRsTGEWVAVKVQRPGVQALVSKDLYVLRRAAEIYQglitRFAPQQRTNYVALLNEWAVGFYTELDFV 314
                 589******************************88**************************9998651111666777799******************* PP

        ABC1  95 rEAknaekfrenfaklk..evkvPkvy 119
                 +EA+n+++++e +++ +  +v vP+vy
  KOO23710.1 315 NEASNMKRMAEVLREAQvvDVIVPRVY 341
                 **************9997779999997 PP

>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.7   0.0     0.045   2.7e+02      12      32 ..     239     259 ..     237     275 .. 0.88
   2 !   12.5   0.0   1.1e-05     0.068     114     163 ..     383     434 ..     312     439 .. 0.74

  Alignments for each domain:
  == domain 1  score: 0.7 bits;  conditional E-value: 0.045
                 SEEEEEEEETTTTEEEEEEEE CS
     Pkinase  12 fGkVykaveketgkivAvKki 32 
                  ++Vy+a+ ++tg+ vAvK+ 
  KOO23710.1 239 LAQVYRAKLRSTGEWVAVKVQ 259
                 589****************85 PP

  == domain 2  score: 12.5 bits;  conditional E-value: 1.1e-05
                 HHHTTEE-SS-SGGGEEEETTTE...EEE-SGTTSEESSSSCSBCTTTSCGGG CS
     Pkinase 114 lHskgiiHrDlKpeNiLidekge...lKitDFGlakelessskltsfvgtseY 163
                 l ++g++H D  p N+L  +++    l ++DFGl++++++++ ++s+v     
  KOO23710.1 383 LLQAGFFHSDPHPGNLLRPHDQSvgrLALIDFGLVARIRQEE-MDSMVSAIVH 434
                 55789************996666788*************988.8888876655 PP

>> APH  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.1   0.0    0.0031        19      23      91 ..     303     368 ..     240     374 .. 0.79
   2 !   15.2   0.1   2.6e-06     0.016     164     196 ..     384     417 ..     373     420 .. 0.87
   3 ?   -3.5   0.1       1.3   7.9e+03      29      54 ..     641     668 ..     594     678 .. 0.64
   4 ?   -1.2   0.8      0.25   1.5e+03     125     162 ..     778     814 ..     730     866 .. 0.63

  Alignments for each domain:
  == domain 1  score: 5.1 bits;  conditional E-value: 0.0031
                 EEEEEE-TTS-HHHHHHHHHHHHHHHHTT-...B--B-CTTBS-EEETTEEEEEEE----EE-SSHHHHHHH CS
         APH  23 yvlrrnpparaaeeirrevallrlLakagv...pvPevlagdtddeeigllfalieyvpgrsllrklsaaql 91 
                 +++ ++ + +  +e++++ ++  +L++a v    vP+v++     e   +++++ ++++g+ l++   ++++
  KOO23710.1 303 WAVGFYTELDFVNEASNMKRMAEVLREAQVvdvIVPRVYD-----EYTTRRVLVSQWIDGKKLSD-CEPSEI 368
                 4555566666777888888888888888887667999999.....66666899*********999.334455 PP

  == domain 2  score: 15.2 bits;  conditional E-value: 2.6e-06
                 S-EEEE-SS-SGGGEEEC....TTEEEEE---TT- CS
         APH 164 lptvllHgDlhpgNllvd..pddgrvtGviDfeda 196
                 l++++ H D+hpgNll    +  gr+ ++iDf+++
  KOO23710.1 384 LQAGFFHSDPHPGNLLRPhdQSVGRL-ALIDFGLV 417
                 5899*************988999999.*****986 PP

  == domain 3  score: -3.5 bits;  conditional E-value: 1.3
                 -TT.S-HHHHHHHHHHHHHHHHTT-.B- CS
         APH  29 ppa.raaeeirrevallrlLakagv.pv 54 
                 +++ r+   +++e a   lL++a   +v
  KOO23710.1 641 AASlRTLLATEAETAADLLLRQALRkSV 668
                 3333444455555555555554433444 PP

  == domain 4  score: -1.2 bits;  conditional E-value: 0.25
                 HHHHHHCHHHCCCGCCTCCHHHHHHHH...HHHHHHHH--S CS
         APH 125 llrqlesatarllaselldlleeleeq...vlaalaallpg 162
                 +++ +++a+ +         l++l++q   +l+al+a+lp+
  KOO23710.1 778 VDAAEADARDGVSNTP----LLQLAKQaisLLRALPANLPT 814
                 2222222222222222....333333344488888888875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (885 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       371  (0.0206927); expected 358.6 (0.02)
Passed bias filter:                      295  (0.0164538); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.66u 0.26s 00:00:00.92 Elapsed: 00:00:00.43
# Mc/sec: 6182.03
//
Query:       KOO23711.1  [L=432]
Description: hypothetical protein Ctob_005066, partial [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.6e-84  282.3   0.2    3.6e-84  281.8   0.2    1.2  1  Nop       snoRNA binding domain, fibrillarin
    1.2e-18   67.2   0.6    2.3e-18   66.3   0.6    1.5  1  NOP5NT    NOP5NT (NUC127) domain


Domain annotation for each model (and alignments):
>> Nop  snoRNA binding domain, fibrillarin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  281.8   0.2     4e-88   3.6e-84       1     229 [.     170     398 ..     170     399 .. 0.93

  Alignments for each domain:
  == domain 1  score: 281.8 bits;  conditional E-value: 4e-88
                 HHHHHHHHHHHHHHHHHHHHTTTSTCHHHHS-SHHHHHHHHHHCCCCHCCT.HHTT.HH.HHHHHHHHHHCHHHH-SSS-S-HHHHHHHHHHHHHHHHH CS
         Nop   1 lldeidkeintlhkrvrewYswhFpELeslvkdnleYakvvkligneredlekkeedee.lakevimaakvtastsmgaelseedlknikelcdrvlel 98 
                 lld++dke+nt+++r++ewY+whFpEL ++v+dnl+Yakv++++g  r+++++ + + + la+e+   +k +a+ smg+e+s ed+kni+ l+++v++l
  KOO23711.1 170 LLDDLDKELNTYAMRLKEWYGWHFPELGKIVPDNLMYAKVIRHMG-VRTKCKTMDFS-SiLAEEIEVEMKEAAEISMGTEVSGEDIKNILMLTEQVISL 266
                 689******************************************.77888555332.23555555555555555************************ PP

                 HHHHHHHHHHHHHHHHHHSHHHHHHCHHHHHHHHHHHHSSHHHHHCS-HHHHTTTT-HHHHCCCHH.T---SSSCHHHCSHHHHHTS-CCCHHHHHHHH CS
         Nop  99 eelrkelleYlesrmsaiAPNlsaLvGeevaarLishaGgLtnLakmPastiqilGaekalfralk.kkntpkyGliyhselvqkatppklkkkiaRll 196
                 +e+r +l eYl++rm+aiAPNls +vGe v+arLi+haG+L+nLak Past+qilGaekalfralk k++tpkyGliyh++lv++a +pk+k+ki+R+l
  KOO23711.1 267 SEYRAQLWEYLKNRMNAIAPNLSVMVGELVGARLIAHAGSLMNLAKQPASTVQILGAEKALFRALKaKHDTPKYGLIYHASLVGQA-QPKHKGKISRVL 364
                 ******************************************************************999***************77.9*********** PP

                 HHHHHHHHHHHHTT---.-SHHHHHHHHHHHHHH CS
         Nop 197 aaKvalaaRiDafsekd.gslGkklreeiekklk 229
                 aaK+al +R+Da +e++ +++G + r ++e++++
  KOO23711.1 365 AAKCALSIRVDALGETStATIGIDGRLKVEERMR 398
                 ***********99999989************986 PP

>> NOP5NT  NOP5NT (NUC127) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.3   0.6   2.6e-22   2.3e-18       1      65 []       2      66 ..       2      66 .. 0.98

  Alignments for each domain:
  == domain 1  score: 66.3 bits;  conditional E-value: 2.6e-22
      NOP5NT  1 fiLfEtaaGYaLfkvkdkkllkkddlvkdsvsdlekfsklvkLkaFqkFesaaeALenanaiseG 65
                ++Lf+t+aG aLf++k+ ++lk+ d+ ++s+sd ++++klv+LkaF+kF ++aeAL+ a+a++eG
  KOO23711.1  2 LVLFDTPAGHALFSLKKPEKLKDPDSLNKSFSDIDSAHKLVSLKAFSKFLDTAEALQSATALVEG 66
                79***********************99999**********************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (432 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       408  (0.0227564); expected 358.6 (0.02)
Passed bias filter:                      361  (0.020135); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.48u 0.20s 00:00:00.68 Elapsed: 00:00:00.37
# Mc/sec: 3538.34
//
Query:       KOO23712.1  [L=729]
Description: DNA replication licensing factor mcm5-a-like protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    8.2e-89  296.5   1.1    6.9e-87  290.2   0.1    2.9  2  MCM           MCM P-loop domain
    4.3e-36  123.5   7.5    9.4e-36  122.4   1.5    2.6  3  MCM_OB        MCM OB domain
    4.1e-26   91.2   9.3    1.4e-14   54.2   1.5    3.3  3  MCM_lid       MCM AAA-lid domain
    1.2e-13   51.6   0.1    3.3e-13   50.1   0.1    1.8  1  MCM_N         MCM N-terminal domain
    2.4e-05   23.8   0.0    7.3e-05   22.2   0.0    1.8  2  Mg_chelatase  Magnesium chelatase, subunit ChlI
    0.00087   19.2   0.0     0.0027   17.6   0.0    1.9  1  AAA_3         ATPase family associated with various cellular 
  ------ inclusion threshold ------
      0.017   15.1   0.1      0.057   13.4   0.0    2.0  2  AAA_5         AAA domain (dynein-related subfamily)


Domain annotation for each model (and alignments):
>> MCM  MCM P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  290.2   0.1   2.7e-90   6.9e-87       2     224 .]     309     516 ..     308     516 .. 0.96
   2 ?   -0.4   0.1       0.2   5.1e+02       5      51 ..     610     656 ..     607     687 .. 0.81

  Alignments for each domain:
  == domain 1  score: 290.2 bits;  conditional E-value: 2.7e-90
                 HHHHHHHHTSSTHHHHHHHHSSTTSSS-HHHHHHHHHHHH---EBBBSSSSBBCSS-EEEEEESSTSTHHHHHHHHHHHSSSEEEEESSSSSSSHSSSE CS
         MCM   2 veeikelakekdiieklvksiapsiyghedvkkaillqlfggvkkkledktklrgdinvllvgdpgtaKsqlLkyveklapravytsgkgssaagLtaa 100
                 +e+++ la+ +di+++l++siapsiyg+ed               +l+d+++lrgdinvll+gdp++aKsq+Lk+vek ap +vytsgkgssaagLta+
  KOO23712.1 309 EEAFHALARGEDIFTRLSNSIAPSIYGSED---------------ELSDGARLRGDINVLLLGDPSVAKSQFLKFVEKAAPISVYTSGKGSSAAGLTAT 392
                 678889999999999999999999999876...............4678889*********************************************** PP

                 EEEESSSSSEEEEETHHHHTTTSEEEEESGGGSTCHHHHHHHHHHHHSEEEEESSSCEEEEE--EEEEEEE--SSSSCCTTS-HHHHSSSSHHHHHHSS CS
         MCM 101 vvrdeetgefvleaGalvladkGvcciDefdkmkeedrsalhEamEqqtisiaKaGivatLnartsvlaAanpkagrydkkksvaeninlsaalLsrFD 199
                 v++d++++ef+le+Ga+vlad+Gv+ciDefdkm+e+dr+a+hEamEqqtisiaKaGi+++Ln+rtsvlaAanp++gryd +k+ ae++++++++LsrFD
  KOO23712.1 393 VTQDSASREFYLEGGAMVLADGGVVCIDEFDKMREQDRVAIHEAMEQQTISIAKAGITTVLNSRTSVLAAANPTFGRYDAEKNAAEQVDFQSTILSRFD 491
                 *************************************************************************************************** PP

                 EEEEE-SSTTHHHHHHHHHHHHHHH CS
         MCM 200 lifvllDkvdeekDeelaehivslh 224
                 +if+l+D+ d ekD++la hi+++h
  KOO23712.1 492 MIFILRDEYDLEKDRTLAAHILKIH 516
                 **********************987 PP

  == domain 2  score: -0.4 bits;  conditional E-value: 0.2
                 HHHHHTSSTHHHHHHHHSSTTSSS-HHHHHHHHHHHH---EBBBSSS CS
         MCM   5 ikelakekdiieklvksiapsiyghedvkkaillqlfggvkkkledk 51 
                 +++l++  +i e+++k+    +  ++dv++ai +  +++ + ++  +
  KOO23712.1 610 VRQLEAIVRIAESVAKMRLSPVATEDDVQTAIHMFTVSTLRAAKMGD 656
                 566667777888999999999999********999999887655444 PP

>> MCM_OB  MCM OB domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  122.4   1.5   3.7e-39   9.4e-36       2     125 ..     129     264 ..     128     265 .. 0.95
   2 ?    4.3   0.0     0.013        34      71     104 ..     560     593 ..     513     603 .. 0.79
   3 ?   -3.8   0.1       4.4   1.1e+04       2      21 ..     605     624 ..     604     631 .. 0.80

  Alignments for each domain:
  == domain 1  score: 122.4 bits;  conditional E-value: 3.7e-39
                 XGG--GGGTTSEEEEEEEEEEE---EEEEEEEEEEETTT-.-EEES---.......-SB-........TTT-HHH-EEE-GGGSEEEEEEEEEEE---- CS
      MCM_OB   2 lRdlrsehigklvkveGivtrasevkpklkkavfeckkcgktvevelee.......PrkCe......ekeCeskdpfkletekskfvdfqklklQEspe 87 
                 +R+l s++++++v ++Giv+++s+vk k++k++ +ck c++t++v ++        PrkC       e  C+  dp+ +++ek+++vd+q+ klQE+pe
  KOO23712.1 129 IRELVSSQVSRVVIIPGIVISSSKVKAKATKIFAQCKGCQTTTQVPVRAgfgganlPRKCAqvrqpgEAPCP-LDPYAIVPEKCQYVDMQTWKLQEAPE 226
                 8****************************************999977667788888*****999999999**.9************************* PP

                 ---------EEEEEEEGGGTT---TT-EEEEEEEEEEE CS
      MCM_OB  88 evpaGelPrslevileddlvdkvkPGdrvevtGiyral 125
                  vp+Ge+Prs+ + ++++lvdk+ PG+rv+vtGi++++
  KOO23712.1 227 MVPTGEMPRSVMLSVDRNLVDKAIPGNRVTVTGIMSIM 264
                 **********************************9986 PP

  == domain 2  score: 4.3 bits;  conditional E-value: 0.013
                 GSEEEEEEEEEEE-------------EEEEEEEG CS
      MCM_OB  71 kskfvdfqklklQEspeevpaGelPrsleviled 104
                 +  +v +++  +QE  e+   G+ Pr + +++++
  KOO23712.1 560 QNYYVAVRQGLVQEDAEAERRGRAPRAVPITVRQ 593
                 666777888889****************999875 PP

  == domain 3  score: -3.8 bits;  conditional E-value: 4.4
                 XGG--GGGTTSEEEEEEEEE CS
      MCM_OB   2 lRdlrsehigklvkveGivt 21 
                 +R+l+ ++++ +v++   v 
  KOO23712.1 605 VRQLEVRQLEAIVRIAESVA 624
                 59999999999999976665 PP

>> MCM_lid  MCM AAA-lid domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.2   1.5   5.6e-18   1.4e-14       2      64 ..     535     606 ..     534     608 .. 0.88
   2 !   40.6   0.6     1e-13   2.6e-10      48      86 ..     609     647 ..     605     648 .. 0.93
   3 ?   -3.0   0.0       4.1   1.1e+04      47      57 ..     702     712 ..     698     718 .. 0.75

  Alignments for each domain:
  == domain 1  score: 54.2 bits;  conditional E-value: 5.6e-18
                 HHHHHHHHHHHTT--BETCHHHHHHHHHHHHHHHHH.........TSSTSSSST--HHHHHHHHHHHHHHHH CS
     MCM_lid   2 llrkYiayarekikPklseeakeklseaYvelRkee.........edskrksipitvRqLesliRLseAlAk 64 
                 +l++Yiayar+k++P+l+e+a+e l+++Yv +R+           ++++ +++pitvRqLe+++R  eA+ +
  KOO23712.1 535 QLKRYIAYARAKCSPRLNEQAREVLQNYYVAVRQGLvqedaeaerRGRAPRAVPITVRQLEAIVRQLEAIVR 606
                 59********************************778888876543337899*************9888765 PP

  == domain 2  score: 40.6 bits;  conditional E-value: 1e-13
                 -HHHHHHHHHHHHHHHHHHTSSSE-HHHHHHHHHHHHHH CS
     MCM_lid  48 tvRqLesliRLseAlAklrlsevvteedveeairllkes 86 
                  vRqLe+++R++e++Ak+rls v+te+dv+ ai++++ s
  KOO23712.1 609 EVRQLEAIVRIAESVAKMRLSPVATEDDVQTAIHMFTVS 647
                 69*********************************9877 PP

  == domain 3  score: -3.0 bits;  conditional E-value: 4.1
                 --HHHHHHHHH CS
     MCM_lid  47 itvRqLesliR 57 
                 +  R+L++++R
  KOO23712.1 702 VAQRALNAMVR 712
                 56788888887 PP

>> MCM_N  MCM N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.1   0.1   1.3e-16   3.3e-13       4      85 ..      33     109 ..      30     132 .. 0.86

  Alignments for each domain:
  == domain 1  score: 50.1 bits;  conditional E-value: 1.3e-16
       MCM_N   4 FedFLeefkddsededgekkYrdqlqemaerekttLevdlddLaafdeeLaeailenpkeylplleealkevvkklepsykd 85 
                 + +F++++     +e++ ++Yrd+l++    ++ +Levdld++ a+d+ La+ ++e p   lp +e+a+ e +k+++    +
  KOO23712.1  33 YFQFIRTY-----REGNVFIYRDKLRQAVSLGIPELEVDLDHVMAWDDVLADDLQERPAFHLPHFEQAALEAAKSMDILDPE 109
                 569*****.....8999********************************************************998874333 PP

>> Mg_chelatase  Magnesium chelatase, subunit ChlI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.8   0.0       2.7     7e+03      21      40 ..     348     367 ..     347     374 .. 0.80
   2 !   22.2   0.0   2.8e-08   7.3e-05      98     169 ..     405     475 ..     397     501 .. 0.86

  Alignments for each domain:
  == domain 1  score: -3.8 bits;  conditional E-value: 2.7
  Mg_chelatase  21 GgHnlllvGppGsGKtmlak 40 
                   G  n+ll+G p   K+   k
    KOO23712.1 348 GDINVLLLGDPSVAKSQFLK 367
                   67799******999997665 PP

  == domain 2  score: 22.2 bits;  conditional E-value: 2.8e-08
  Mg_chelatase  98 kpGeislahnGvLfLDElpefkrkvlevLRePledgevtisrakakvefparfqlvaamNpcpcgklkdkek 169
                   + G++ la  Gv+ +DE+ +++++   ++ e +e+++++i++a  ++   +r+ ++aa+Np+   +++ +++
    KOO23712.1 405 EGGAMVLADGGVVCIDEFDKMREQDRVAIHEAMEQQTISIAKAGITTVLNSRTSVLAAANPTFG-RYDAEKN 475
                   57999********************************************************854.4443333 PP

>> AAA_3  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.6   0.0   1.1e-06    0.0027      39     113 ..     387     466 ..     351     477 .. 0.76

  Alignments for each domain:
  == domain 1  score: 17.6 bits;  conditional E-value: 1.1e-06
       AAA_3  39 sdilGtevfeekekefefkkGpvf.an..llladeinrappktqsalleameerqvtve..gethklpepflvlatqnPi 113
                 + ++ t   +++++ef ++ G+++ a+  ++  de ++   + + a+ eame+++++++  g t+ l++   vla+ nP 
  KOO23712.1 387 AGLTATVTQDSASREFYLEGGAMVlADggVVCIDEFDKMREQDRVAIHEAMEQQTISIAkaGITTVLNSRTSVLAAANPT 466
                 56677777788899*****99976233559*************************99872256899************95 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.0   2.2e-05     0.057       1     123 [.     351     466 ..     351     479 .. 0.82
   2 ?   -2.7   0.0       2.1   5.3e+03      74      74 ..     637     637 ..     601     695 .. 0.52

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 2.2e-05
                 EEEEE--SSSSHHHHHHHGGGGBS--EEEEE--TT--HHHHH--B--..........--------G-SEEEEESGGG--HHHHHHHHHHHHSSEEE..- CS
       AAA_5   1 dvlLvGppGtgKselaerlaaalnreveyvqltrdtteedlkgrreik.ngttslvdsplvraaregeilvlDEveraesevlnsLlslleerrlllee 98 
                 +vlL+G+p ++Ks++ + + +a   ++ ++   ++ +++ l+  +  +  +++ + ++ ++     g ++++DE+++++ +   + +  +e++++++++
  KOO23712.1 351 NVLLLGDPSVAKSQFLKFVEKAA--PISVYTSGKGSSAAGLTATVTQDsASREFYLEGGAM-VLADGGVVCIDEFDKMREQDRVAIHEAMEQQTISIAK 446
                 699***********999999985..666677788889999999988777555555555555.588**************99999************999 PP

                 SSSEEE---......-EEEEEESS- CS
       AAA_5  99 ggelvkaknddllerfrviatanpl 123
                  g  +  ++      ++v+a+anp 
  KOO23712.1 447 AGITTVLNSR-----TSVLAAANPT 466
                 8888877765.....8999999997 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 2.1
                 G CS
       AAA_5  74 v 74 
                 v
  KOO23712.1 637 V 637
                 2 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (729 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       602  (0.0335769); expected 358.6 (0.02)
Passed bias filter:                      450  (0.025099); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.61u 0.28s 00:00:00.89 Elapsed: 00:00:00.43
# Mc/sec: 5055.62
//
Query:       KOO23713.1  [L=226]
Description: fructose-6-phosphate aldolase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.3e-31  108.0   0.0    2.5e-29  102.5   0.0    2.0  1  TAL_FSA   Transaldolase/Fructose-6-phosphate aldolase


Domain annotation for each model (and alignments):
>> TAL_FSA  Transaldolase/Fructose-6-phosphate aldolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  102.5   0.0   1.4e-33   2.5e-29       1     245 [.       7     217 ..       7     225 .. 0.89

  Alignments for each domain:
  == domain 1  score: 102.5 bits;  conditional E-value: 1.4e-33
                 EEEE---HHHHHHHHHTT---EEE--HHHHHH..TTS.-HHHHHHHHHHH........................H-S-EEEE-S-...-SHHHHHHHHH CS
     TAL_FSA   1 lvlDtadrelikklleekgiqgvTtNPsliekaikykalydeaieeikkegkkvkeaydkLavedilealdllgadgrvslEVdarlsddteatieeAr 99 
                 ++lDta re++++ll+ ++++gvTtNP+++++  ++ +   eai+e++k+      +y+             lg   +   +       +++++  ++ 
  KOO23713.1   7 FFLDTAVREELTQLLPLGMFHGVTTNPTILQR--SGVPCTVEAIHELAKD------VYE-------------LG-AQEFMCQAWG---STADEMFVKGI 80 
                 69******************************..8889999999999999......222.............32.3445566666...89********* PP

                 HHHTT-T..TEEEEEESSHHHHHHHHHHHHTT--EEEEEE-SHHHHHHHHHHT-SEEEEBHHHHHTTT............S-HHHHHHHHHHHHHHHT- CS
     TAL_FSA 100 rlialyerenvlIKiPateeGikAikeLkkeGinvnvTliFsleqalaaaeagasviSpFvgRiddllkkleekdklkgkddgvalvkeiynyykklgy 198
                  l++l + +  +IK+P+t++G++A+ +L+++G++v++T+++   qal aa  g+++ +p++gR+ d++            ++g   + ++ ++++ lg 
  KOO23713.1  81 ALATLPGFPAPVIKVPVTPAGVEAAAQLQANGVRVCLTACYASSQALVAASLGCEYLAPYLGRMTDAG------------KNGFGEIAKMQEIVDGLGA 167
                 ********************************************************************............69***************99 PP

                 S-EEEEBS--SHHHHH..HHHT-SEEEE-HHHHHHHT--HHH........ CS
     TAL_FSA 199 sTkvmaasfrnveeve..elagcdtvTippkllealakhgktseklee.e 245
                 sT +  as+r+v+     + +g +t T +p++ +al  +++t e++++ e
  KOO23713.1 168 STRIFVASIRTVDSMAelATLGLNTFTFSPDIARALFVEPLTIEAARAfE 217
                 ***************9777789*******************944443333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (226 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       310  (0.0172904); expected 358.6 (0.02)
Passed bias filter:                      272  (0.015171); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.21s 00:00:00.63 Elapsed: 00:00:00.37
# Mc/sec: 1834.99
//
Query:       KOO23714.1  [L=1317]
Description: leucine rich repeat protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      5e-13   48.8   0.3    2.5e-08   33.4   0.0    3.2  3  Zeta_toxin       Zeta toxin
      8e-13   48.0   6.9    1.6e-05   24.5   0.2    3.5  3  LRR_8            Leucine rich repeat
    2.2e-11   43.8  11.8    0.00035   20.9   1.4    4.8  4  LRR_4            Leucine Rich repeats (2 copies)
      4e-07   29.7   5.9        5.5    8.0   0.3    6.3  6  LRR_1            Leucine Rich Repeat
    1.1e-05   25.6   0.0    0.00015   21.9   0.0    3.0  2  AAA_33           AAA domain
     0.0027   18.1   1.9      0.024   15.0   0.0    3.4  4  AAA_16           AAA ATPase domain
     0.0064   16.2   0.2         11    6.2   0.0    3.5  3  IQ               IQ calmodulin-binding motif
     0.0073   15.8   0.2        2.6    7.5   0.0    2.5  2  LRR_9            Leucine-rich repeat
  ------ inclusion threshold ------
      0.018   15.3   0.0        0.2   11.9   0.0    2.6  2  AAA_22           AAA domain
       0.02   14.8   0.0      0.048   13.6   0.0    1.5  1  Rad17            Rad17 P-loop domain
       0.03   14.8   0.0       0.28   11.6   0.0    2.5  2  AAA              ATPase family associated with various cellul
      0.031   14.8   0.3       0.53   10.8   0.0    3.2  2  AAA_18           AAA domain
      0.076   12.7   0.0        0.3   10.8   0.0    2.0  2  Viral_helicase1  Viral (Superfamily 1) RNA helicase
      0.076   13.4   0.0       0.45   10.9   0.0    2.3  2  RNA_helicase     RNA helicase
       0.55   10.3   2.3       0.96    9.6   0.1    2.8  1  Leucyl-specific  Leucine-tRNA synthetase-specific domain
       0.56   10.7   0.0       0.56   10.7   0.0    3.4  3  ABC_tran         ABC transporter
        1.1    9.1   0.0        1.1    9.1   0.0    2.7  3  ATPase_2         ATPase domain predominantly from Archaea
        3.1    7.8   7.2         24    5.0   0.8    3.5  2  Prp19            Prp19/Pso4-like
        6.2    5.8  32.1          4    6.4   7.1    3.3  3  YdfA_immunity    SigmaW regulon antibacterial


Domain annotation for each model (and alignments):
>> Zeta_toxin  Zeta toxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.4   0.0   2.7e-11   2.5e-08       6      66 ..     152     213 ..     148     229 .. 0.83
   2 !   11.7   0.0   0.00012      0.11      82     166 ..     281     364 ..     273     373 .. 0.88
   3 ?   -2.8   0.2       3.4   3.2e+03     150     172 ..     491     524 ..     464     543 .. 0.62

  Alignments for each domain:
  == domain 1  score: 33.4 bits;  conditional E-value: 2.7e-11
  Zeta_toxin   6 kdkkypsqerPklillgGqpGAGKselaellkdele.rqgnvvrldpDdlRelhPeyeeilk 66 
                 k k+ p+++rP li++ G pG+GKs+++++l +  + + +++v+ldpDd R + +ey+ ++ 
  KOO23714.1 152 KGKQAPQKDRPRLIIMYGPPGCGKSYALKELYRLKRwSPEEFVHLDPDDCRMYCREYRLCIS 213
                 44556888*********************998877789*******************98876 PP

  == domain 2  score: 11.7 bits;  conditional E-value: 0.00012
  Zeta_toxin  82 elvekllqeaiengyniivegtlrspdvvkk.laealk.kaGYevevvvvavkkelSrlgvldRyeeevaegRlvpkeehdeafegl 166
                 e+++  ++ a+ +gy++++++  ++p+++ +  +++++ + +Y+v v    ++ e+ +++ + R +e+   gR v+  +  + f+++
  KOO23714.1 281 EMTDAFVDRAFVAGYHVVYDTMGKDPHKFLReVMRRARtSHNYQVFVCGCFAPWEMVYSRGRMRALET---GRDVNAGFVRKEFDNM 364
                 789999**********************99888888886789*********99999999999999999...9999988888877776 PP

  == domain 3  score: -2.8 bits;  conditional E-value: 3.4
  Zeta_toxin 150 e...........gRlvpkeehdeafeglresvea 172
                 +            R  + ++h+e  ++l++++ +
  KOO23714.1 491 QlkemkemgtelMREQDRTHHNEDITELEKKISE 524
                 0444444555545888888998888888888876 PP

>> LRR_8  Leucine rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.5   0.2   1.7e-08   1.6e-05       2      61 .]     920     979 ..     919     979 .. 0.96
   2 !    6.6   0.2    0.0068       6.4      24      48 ..     990    1014 ..     981    1016 .. 0.83
   3 !   18.8   0.2   1.1e-06   0.00099       2      45 ..    1061    1105 ..    1058    1122 .. 0.79

  Alignments for each domain:
  == domain 1  score: 24.5 bits;  conditional E-value: 1.7e-08
                 T-SEEE-TTS--SEE-TTSSTT-TT--EEE--SS---GGGGGGGTT--S-.EEE--SS-- CS
       LRR_8   2 nLtsLdLsnNrltslddeaFkglsnLkvLdLsnNllttlspgafsgLpsLrsLdLsgNrL 61 
                 +L++L+L    l++  +e   ++  +++L+L++N+l+ + p+af  +++L+ L L+++ L
  KOO23714.1 920 RLRTLNLKGRGLHGTLPEKLATCIEMETLHLGYNSLKGMIPRAFKFMTKLKNLSLNYCEL 979
                 79******************************************************9876 PP

  == domain 2  score: 6.6 bits;  conditional E-value: 0.0068
                  -TT--EEE--SS---GGGGGGGTT- CS
       LRR_8   24 lsnLkvLdLsnNllttlspgafsgL 48  
                  l+nL+ L L nN+l+   p  f gL
  KOO23714.1  990 LKNLERLCLDNNKLKGSIPSRFGGL 1014
                  8999999999999999888888888 PP

  == domain 3  score: 18.8 bits;  conditional E-value: 1.1e-06
                  T-SEEE-TTS--SEE-TTSSTT-TT--EEE--SS---G.GGGGGG CS
       LRR_8    2 nLtsLdLsnNrltslddeaFkglsnLkvLdLsnNlltt.lspgaf 45  
                  +L++L L+nN+l++  +++  ++++L+  d +nN+lt  + p ++
  KOO23714.1 1061 KLKELFLNNNQLSGAIPDTLANCQALEKVDFTNNQLTGtVPPAWL 1105
                  589999999999999999999999999999999988875666655 PP

>> LRR_4  Leucine Rich repeats (2 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.3   0.0     0.063        59       2      38 ..     920     954 ..     919     960 .. 0.86
   2 !   20.9   1.4   3.7e-07   0.00035       1      37 [.     967    1005 ..     967    1012 .. 0.87
   3 !   19.9   1.0   7.6e-07   0.00071       2      37 ..    1061    1097 ..    1061    1101 .. 0.91
   4 !   13.2   0.0   9.8e-05     0.093       2      33 ..    1085    1121 ..    1084    1132 .. 0.84

  Alignments for each domain:
  == domain 1  score: 4.3 bits;  conditional E-value: 0.063
                 S--EEE--SS---.E-S-.HHH-TT--EEE-.-S----- CS
       LRR_4   2 nLevLdLsnNqlt.dipl.leklpnLkeLdLsgNnlitd 38 
                 +L++L+L +  l  ++p  l+ +  +++L+L  N    +
  KOO23714.1 920 RLRTLNLKGRGLHgTLPEkLATCIEMETLHLGYN----S 954
                 79******878**999999999*********778....4 PP

  == domain 2  score: 20.9 bits;  conditional E-value: 3.7e-07
                  SS--EEE--SS---.E-S-.HHH-TT--EEE-.-S---.- CS
       LRR_4    1 pnLevLdLsnNqlt.dipl.leklpnLkeLdLsgNnli.t 37  
                  ++L++L+L+ + lt ++p  l+ l+nL+ L L +Nn++ +
  KOO23714.1  967 TKLKNLSLNYCELTgELPAeLGELKNLERLCL-DNNKLkG 1005
                  79*****************8778*******88.8888844 PP

  == domain 3  score: 19.9 bits;  conditional E-value: 7.6e-07
                  S--EEE--SS---.E-S-.HHH-TT--EEE-.-S---- CS
       LRR_4    2 nLevLdLsnNqlt.dipl.leklpnLkeLdLsgNnlit 37  
                  +L++L L+nNql+  ip  l+++  L+++d   Nn++t
  KOO23714.1 1061 KLKELFLNNNQLSgAIPDtLANCQALEKVDF-TNNQLT 1097
                  79***********99999*999*********.777885 PP

  == domain 4  score: 13.2 bits;  conditional E-value: 9.8e-05
                  S--EEE--SS---.E-S-..HH..H-TT--EEE-.-S CS
       LRR_4    2 nLevLdLsnNqlt.dipl..le..klpnLkeLdLsgN 33  
                   Le++d+ nNqlt ++p+  l   ++++L+ + L +N
  KOO23714.1 1085 ALEKVDFTNNQLTgTVPPawLVekQCTKLEFFRLYNN 1121
                  69***********888886633746*********555 PP

>> LRR_1  Leucine Rich Repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.0       6.7   6.3e+03       1       9 [.     920     928 ..     920     941 .. 0.80
   2 ?    5.3   0.0     0.044        42       3      22 ..     946     965 ..     945     966 .. 0.92
   3 ?    5.5   0.1     0.037        35       1      22 [.     968     989 ..     968     990 .. 0.89
   4 ?    5.5   0.5     0.036        34       1      22 [.     992    1013 ..     992    1014 .. 0.86
   5 !    8.0   0.3    0.0058       5.5       1      23 []    1061    1083 ..    1061    1083 .. 0.94
   6 ?    1.4   0.0      0.83   7.8e+02       2      19 ..    1086    1103 ..    1085    1107 .. 0.84

  Alignments for each domain:
  == domain 1  score: -1.4 bits;  conditional E-value: 6.7
       LRR_1   1 nLrhLdLsn 9  
                 +Lr+L+L +
  KOO23714.1 920 RLRTLNLKG 928
                 69****955 PP

  == domain 2  score: 5.3 bits;  conditional E-value: 0.044
       LRR_1   3 rhLdLsnnpllglppnsfqn 22 
                 ++L+L++n+l g +p++f++
  KOO23714.1 946 ETLHLGYNSLKGMIPRAFKF 965
                 79****************97 PP

  == domain 3  score: 5.5 bits;  conditional E-value: 0.037
       LRR_1   1 nLrhLdLsnnpllglppnsfqn 22 
                 +L+ L L+++ l+g +p+ +  
  KOO23714.1 968 KLKNLSLNYCELTGELPAELGE 989
                 79************99998765 PP

  == domain 4  score: 5.5 bits;  conditional E-value: 0.036
       LRR_1    1 nLrhLdLsnnpllglppnsfqn 22  
                  nL++L L nn l g +p+ f +
  KOO23714.1  992 NLERLCLDNNKLKGSIPSRFGG 1013
                  8***********8888887766 PP

  == domain 5  score: 8.0 bits;  conditional E-value: 0.0058
       LRR_1    1 nLrhLdLsnnpllglppnsfqnL 23  
                  +L++L L+nn+l+g +p+++ n+
  KOO23714.1 1061 KLKELFLNNNQLSGAIPDTLANC 1083
                  7*****************99887 PP

  == domain 6  score: 1.4 bits;  conditional E-value: 0.83
       LRR_1    2 LrhLdLsnnpllglppns 19  
                  L++ d +nn+l+g  p++
  KOO23714.1 1086 LEKVDFTNNQLTGTVPPA 1103
                  999********8877765 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.9   0.0   1.6e-07   0.00015       1     128 [.     164     354 ..     164     364 .. 0.73
   2 ?   -2.4   0.5       5.2   4.9e+03      33      81 ..    1248    1294 ..    1210    1308 .. 0.54

  Alignments for each domain:
  == domain 1  score: 21.9 bits;  conditional E-value: 1.6e-07
      AAA_33   1 lvllvGlpGsGKstlaerllkklg.....avllssdt..................................lrrrlfgtdqqskt.............. 46 
                 l+++ G+pG+GKs+ +++l++        +v+l+ d+                                               +              
  KOO23714.1 164 LIIMYGPPGCGKSYALKELYRLKRwspeeFVHLDPDDcrmycreyrlcisgahaaklksvqeeygdrlkptK------------Wispdgqfqedgfsv 250
                 79*****************8555588999********88888887777777666666665555444444440............144445555556666 PP

      AAA_33  47 ...................dytrvl.drlyqilnelarkalsagrnvildatnlsrrer..arflklarrlgvpvrivvvetdeetlkeRlakRaangd 123
                                    +   +  ++ ++++ +++++a  ag++v+ d    +++++  + ++++   ++++v +  + +++e   +R + Ra +++
  KOO23714.1 251 dghylalssatmrsqflvrKKMLWQpFKKKEMTDAFVDRAFVAGYHVVYDTMGKDPHKFlrEVMRRARTSHNYQVFVCGCFAPWEMVYSRGRMRALETG 349
                 666666666666655555322222214466788899999999********999999998756777777799************************9987 PP

      AAA_33 124 drsev 128
                 +++++
  KOO23714.1 350 RDVNA 354
                 76665 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 5.2
      AAA_33   33 lrrrlfgtdqqskt..dytrvl.drlyqilnelarkalsagrnvildatnls 81  
                  + +r+ ++ ++++   dy+r + +  ++ l     +a + + ++i+ + n +
  KOO23714.1 1248 AATRVQANVRKHQAeaDYQRQKlQAEKRLL-----QATADEEPAIVEQQNMR 1294
                  334444433332221133332202222222.....34445666666655554 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.0   2.6e-05     0.024      19      51 ..     157     188 ..     152     229 .. 0.79
   2 ?   -1.6   0.0       3.2     3e+03      86     132 ..     565     626 ..     500     636 .. 0.54
   3 ?   -1.4   0.0       2.7   2.6e+03      56     137 ..     828     860 ..     794     911 .. 0.68
   4 ?   -2.7   0.5         7   6.6e+03      80     106 ..    1214    1236 ..    1173    1293 .. 0.49

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 2.6e-05
      AAA_16  19 vrsgrpelvllsGesGvGKsslvrellralekd 51 
                   ++rp+l++ +G++G+GKs  ++el+r l++ 
  KOO23714.1 157 PQKDRPRLIIMYGPPGCGKSYALKELYR-LKRW 188
                 567899********************94.6554 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 3.2
      AAA_16  86 ldeaesaeleawrekleeala...............avpelagaeasrllellkrllallsr 132
                 l+++e++  e+ + +++e +                +  + +ga+a + l++l +l+ ++++
  KOO23714.1 565 LRKDEKQRIEEGAPAITEDALeymkvrckevnklkvDMVQPSGAGADDALNTLLALIHKAKK 626
                 22233333444444444444434445555444453322233333335555555555544444 PP

  == domain 3  score: -1.4 bits;  conditional E-value: 2.7
      AAA_16  56 lrgkcdqlesaipysalaqalareellrqlldeaesaeleawrekleealaavpelagaea...srllellkrll.allsrderpl 137
                 l  kc                                                       +     l+e+l+++l +ll++de pl
  KOO23714.1 828 LHLKCSN-----------------------------------------------------StlaDGLREKLQKMLqELLQKDECPL 860
                 3333333.....................................................13335566666666666666655554 PP

  == domain 4  score: -2.7 bits;  conditional E-value: 7
      AAA_16   80 ellrqlldeaesaeleawrekleeala 106 
                  +ll++ +de    e++a  ++ ++ ++
  KOO23714.1 1214 RLLQATADE----EPAAVVQEEKTDAG 1236
                  344444444....22222222222222 PP

>> IQ  IQ calmodulin-binding motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.2   0.0     0.011        11       2      16 ..      59      73 ..      58      78 .. 0.86
   2 ?   -1.9   0.0       4.6   4.3e+03       8      16 ..    1192    1200 ..    1191    1205 .. 0.81
   3 ?    6.2   0.0     0.011        11       2      16 ..    1247    1261 ..    1246    1266 .. 0.86

  Alignments for each domain:
  == domain 1  score: 6.2 bits;  conditional E-value: 0.011
                HHHHHHHHHHHHHHH CS
          IQ  2 kaaikIQaawRGyla 16
                +aa++ Qa +R ++a
  KOO23714.1 59 DAATRVQANVRKHQA 73
                79***********98 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 4.6
                  HHHHHHHHH CS
          IQ    8 QaawRGyla 16  
                  Qa +R ++a
  KOO23714.1 1192 QANVRKHQA 1200
                  9*****998 PP

  == domain 3  score: 6.2 bits;  conditional E-value: 0.011
                  HHHHHHHHHHHHHHH CS
          IQ    2 kaaikIQaawRGyla 16  
                  +aa++ Qa +R ++a
  KOO23714.1 1247 DAATRVQANVRKHQA 1261
                  79***********98 PP

>> LRR_9  Leucine-rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.6   0.0     0.011        10       8     101 ..     908    1004 ..     902    1007 .. 0.75
   2 !    7.5   0.0    0.0028       2.6      53     128 ..    1049    1126 ..    1028    1138 .. 0.78

  Alignments for each domain:
  == domain 1  score: 5.6 bits;  conditional E-value: 0.011
       LRR_9    8 likqsaqyinairereldlrgykip.vienlGatldqfdtidlsdndirkl..dgfPllkrlktlllnnnriv.riaegleevlPnleelvltnnel 100 
                  li++  q +   r r l+l+g  +  ++ +  at   ++t++l  n ++ +    f ++ +lk l+ln   ++  +  +l+e l nle l l nn+l
  KOO23714.1  908 LIARRDQQLHCHRLRTLNLKGRGLHgTLPEKLATCIEMETLHLGYNSLKGMipRAFKFMTKLKNLSLNYCELTgELPAELGE-LKNLERLCLDNNKL 1003
                  5666677777777777777776553244444578888999*******99985568*************98887245556665.899********998 PP

       LRR_9  101 q 101 
                  +
  KOO23714.1 1004 K 1004
                  6 PP

  == domain 2  score: 7.5 bits;  conditional E-value: 0.0028
       LRR_9   53 dirkldgfPllkrlktlllnnnrivriaegleevlPnleelvltnnelqeladldPlas..lkklellsllknpvtnk 128 
                  ++++l     l +lk l+lnnn++    ++       le++ +tnn+l+  +    l++    kle++ l +n  +++
  KOO23714.1 1049 ELKRLHKDAGLMKLKELFLNNNQLSGAIPDTLANCQALEKVDFTNNQLTGTVPPAWLVEkqCTKLEFFRLYNNEHMTQ 1126
                  778888888899************9988888888899**********9877665556542245666666666665555 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   0.00021       0.2       4      29 ..     161     186 ..     158     229 .. 0.84
   2 ?   -0.7   0.0       1.7   1.6e+03      38      75 ..     822     857 ..     808     875 .. 0.74

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 0.00021
      AAA_22   4 tagilvvtGesGtGKTtllrrlleql 29 
                 + ++++ +G++G+GK++ l++l + +
  KOO23714.1 161 RPRLIIMYGPPGCGKSYALKELYRLK 186
                 568999**************998764 PP

  == domain 2  score: -0.7 bits;  conditional E-value: 1.7
      AAA_22  38 erpevv.fvtlpsstsskdllrellralglelkaerlss 75 
                 ++ +vv + ++++st  + l+++l + l++ l +   ++
  KOO23714.1 822 AGEGVVlHLKCSNSTLADGLREKLQKMLQELLQK---DE 857
                 5666667999999999999999999999987776...44 PP

>> Rad17  Rad17 P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.0   5.1e-05     0.048      44      68 ..     161     185 ..     145     195 .. 0.79

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 5.1e-05
       Rad17  44 kkriLLisGPsGCgkstvvkvLske 68 
                 + r++++ GP+GCgks ++k+L + 
  KOO23714.1 161 RPRLIIMYGPPGCGKSYALKELYRL 185
                 3469999**************9765 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0    0.0003      0.28       1      20 [.     165     184 ..     165     223 .. 0.83
   2 ?   -1.0   0.0       2.3   2.1e+03      58      98 ..     462     497 ..     447     509 .. 0.81

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 0.0003
                 EEEESSTTSSHHHHHHHHHH CS
         AAA   1 vllyGppGtGKTllakavak 20 
                 +++yGppG+GK+++ k + +
  KOO23714.1 165 IIMYGPPGCGKSYALKELYR 184
                 589**********9998865 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 2.3
                 TSEEEEEETGGGHHHHHTTCCCHHHHHHHHHHHHHHHHTTT CS
         AAA  58 kpsilfiDEidalaksrsgseseeeervvnqLlteldgvkk 98 
                 +p+ l ++E  a+ +++     +  ++++n+L ++l+++k+
  KOO23714.1 462 APVALCVEECSAMLNAQ-----TRMRTTINELAHQLKEMKE 497
                 47888899999998888.....8899999999999999887 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   0.00056      0.53       1      44 [.     165     217 ..     165     235 .. 0.74
   2 ?   -0.8   0.0       2.2   2.1e+03      12      24 ..     835     848 ..     810     919 .. 0.65

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00056
      AAA_18   1 IlltGtpGvGKttlakeLskrlgf..........gvnlrdvakenglllevdpe 44 
                 I+  G+pG+GK+   keL ++              + +r +++e +l+++  ++
  KOO23714.1 165 IIMYGPPGCGKSYALKELYRLK-RwspeefvhldPDDCRMYCREYRLCISGAHA 217
                 8899**************8773.3356666777888888888888888887777 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 2.2
      AAA_18  12 ttlakeLskrl.gf 24 
                 +tla+ L+++l ++
  KOO23714.1 835 STLADGLREKLqKM 848
                 56666666666333 PP

>> Viral_helicase1  Viral (Superfamily 1) RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   0.00032       0.3       2      22 ..     166     186 ..     165     222 .. 0.84
   2 ?   -2.2   0.0       2.9   2.8e+03      98     151 ..    1132    1184 ..    1132    1221 .. 0.70

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00032
  Viral_helicase1   2 vvhGvpGcGKStlirkllrts 22 
                      ++ G pGcGKS ++++l+r +
       KOO23714.1 166 IMYGPPGCGKSYALKELYRLK 186
                      67799*************984 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 2.9
  Viral_helicase1   98 lQipfhsrnasfllahlpsslshrvgrrttyllpsdvaeilsakvgtevevers 151 
                       +Q +++ r++++++ + + +  +r+ r  +++ ps  a++      + + ++++
       KOO23714.1 1132 EQLEQIARDGDAYWERVVDKSKWRFVRLEASRSPSVAAALPHTE-VKADPSKKE 1184
                       58999999999999999999999999999999999998887776.344444443 PP

>> RNA_helicase  RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   0.00048      0.45       1      19 [.     165     183 ..     165     203 .. 0.91
   2 ?   -2.2   0.0       5.6   5.3e+03      40      86 ..     872     918 ..     832     924 .. 0.54

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00048
  RNA_helicase   1 iwlyGpsgeGKStlakeLa 19 
                   i++yGp+g+GKS++ keL 
    KOO23714.1 165 IIMYGPPGCGKSYALKELY 183
                   789************9975 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 5.6
  RNA_helicase  40 eddfwdgYtgqevvvidDfgqvkdeenpsdlaelirlvsstpyplnm 86 
                    ++ w+g +g+    i D+ ++++ ++ +d++    l+     +l++
    KOO23714.1 872 WQKTWKGEKGKHWPAIKDLTRQTKMNDFKDCSLHDLLIARRDQQLHC 918
                   35666666666666666666666443333555555555555555555 PP

>> Leucyl-specific  Leucine-tRNA synthetase-specific domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   0.1     0.001      0.96      10      52 ..     469     511 ..     461     512 .. 0.85

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 0.001
  Leucyl-specific  10 eGeivrLseeaRirLeleeseLsleevkKmGAELRehedGklh 52 
                      e     L+ ++R+r  ++e +  l+e+k mG EL  ++d + h
       KOO23714.1 469 EECSAMLNAQTRMRTTINELAHQLKEMKEMGTELMREQDRTHH 511
                      555678999*************************988886655 PP

>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   0.00059      0.56      13      51 ..     164     203 ..     160     245 .. 0.81
   2 ?   -2.9   0.0       9.5   8.9e+03     101     116 ..    1006    1021 ..     990    1023 .. 0.66
   3 ?   -1.8   0.8       4.4   4.1e+03      79      80 ..    1231    1258 ..    1160    1307 .. 0.52

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00059
                 EEEEEESTTSSHHHHHHHHTTSS--.SEEEEEETTCEGGG CS
                 xxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxx RF
    ABC_tran  13 kvaivGenGaGKStLlkllagllkp.teGeilldgkdlke 51 
                 ++ + G+ G+GKS  lk l++l ++  e+ ++ld +d ++
  KOO23714.1 164 LIIMYGPPGCGKSYALKELYRLKRWsPEEFVHLDPDDCRM 203
                 56789*******************9556667888877776 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 9.5
                  GESTTSGGS-HHHHHH CS
                  xxxxxxxxxxxxxxxx RF
    ABC_tran  101 vvksspssLSgGqkqr 116 
                   + s+   LSgG+k+ 
  KOO23714.1 1006 SIPSRFGGLSGGEKEE 1021
                  33456699*****976 PP

  == domain 3  score: -1.8 bits;  conditional E-value: 4.4
                  H..........................H CS
                  x..........................x RF
    ABC_tran   79 n..........................e 80  
                  +                          +
  KOO23714.1 1231 EktdagvhpdhskiendaatrvqanvrK 1258
                  3333333333333222332222222221 PP

>> ATPase_2  ATPase domain predominantly from Archaea
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.7   0.3       9.5     9e+03      64     102 ..      77     112 ..      60     147 .. 0.54
   2 ?    9.1   0.0    0.0012       1.1      18      45 ..     160     187 ..     154     209 .. 0.83
   3 ?   -0.0   1.1      0.73   6.9e+02      63     137 ..     516     594 ..     483     639 .. 0.61

  Alignments for each domain:
  == domain 1  score: -3.7 bits;  conditional E-value: 9.5
    ATPase_2  64 kldefieeeeekkklekalgiavpkaeleeilkeksklv 102
                 + +++++ e e+k+l +a++++ p + ++e   ek+  v
  KOO23714.1  77 YQKQKLQAETEEKRLLQATANKEPAVVVQE---EKTDAV 112
                 334444545555556666655555554433...333333 PP

  == domain 2  score: 9.1 bits;  conditional E-value: 0.0012
    ATPase_2  18 epneiyfiYGpegsGKtaLlkeiienle 45 
                 ++ + +  YGp g+GK+  lke++  ++
  KOO23714.1 160 DRPRLIIMYGPPGCGKSYALKELYRLKR 187
                 56677899**************988775 PP

  == domain 3  score: -0.0 bits;  conditional E-value: 0.73
    ATPase_2  63 skldefieeeeekkklekalgiavpkaeleeilk..eksklvfkaielllekikkkgkk......iiiiiDelqklidlglng 137
                 ++l+++    +ek+k  +++ +  p+ + ++i++     ++    ++++++k++k+ k+      ++i  D l +++ +  ++
  KOO23714.1 516 TELEKK---ISEKRKDLEKMEKSYPERRDNAISQyrPLLNQSVFRFNAAYAKLRKDEKQrieegaPAITEDALEYMK-VRCKE 594
                 333333...23333333333444455454455555444555555666777777777666666666666666666665.44443 PP

>> Prp19  Prp19/Pso4-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.0   0.9     0.051        48      43      65 ..      57      79 ..      55      83 .. 0.85
   2 ?    5.0   0.8     0.025        24      43      67 ..    1245    1269 ..    1241    1271 .. 0.86

  Alignments for each domain:
  == domain 1  score: 4.0 bits;  conditional E-value: 0.051
                HHHHHHHHHHHHHHHHHHHHHHH CS
       Prp19 43 qnDAAvrViArllkerdeareal 65
                +nDAA+rV A++ k + ea  + 
  KOO23714.1 57 ENDAATRVQANVRKHQAEADYQK 79
                69**********99999987765 PP

  == domain 2  score: 5.0 bits;  conditional E-value: 0.025
                  HHHHHHHHHHHHHHHHHHHHHHHHC CS
       Prp19   43 qnDAAvrViArllkerdearealae 67  
                  +nDAA+rV A++ k + ea  + ++
  KOO23714.1 1245 ENDAATRVQANVRKHQAEADYQRQK 1269
                  79***********999999887665 PP

>> YdfA_immunity  SigmaW regulon antibacterial
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.1   4.5     0.011        10     220     270 ..      60     112 ..      56     136 .. 0.83
   2 ?    5.9   4.7     0.006       5.7     222     267 ..    1189    1233 ..    1183    1245 .. 0.85
   3 ?    6.4   7.1    0.0042         4     219     274 ..    1247    1300 ..    1243    1309 .. 0.82

  Alignments for each domain:
  == domain 1  score: 5.1 bits;  conditional E-value: 0.011
  YdfA_immunity 220 vgenigaklqadqaead..kkiaqakaeerramavakeqemkakvqemrakvv 270
                     ++ + a+++++qaead  k+  qa+ ee+r +   +++e    vqe ++  v
     KOO23714.1  60 AATRVQANVRKHQAEADyqKQKLQAETEEKRLLQATANKEPAVVVQEEKTDAV 112
                    567899**********944567899999***9999999999999999887655 PP

  == domain 2  score: 5.9 bits;  conditional E-value: 0.006
  YdfA_immunity  222 enigaklqadqaeadkkiaqakaeerramavakeqemkakvqemra 267 
                     e + a+++++qaead +  + +ae+r   a+a e    a vqe ++
     KOO23714.1 1189 EGVQANVRKHQAEADYQRQKLQAEKRLLQATADEE-PAAVVQEEKT 1233
                     67999**********************99999885.5777887764 PP

  == domain 3  score: 6.4 bits;  conditional E-value: 0.0042
  YdfA_immunity  219 dvgenigaklqadqaeadkkiaqakaeerramavakeqemkakvqemrakvveaea 274 
                     d ++ + a+++++qaead +  + +ae+r   a+a e    a v++++ ++v+a+ 
     KOO23714.1 1247 DAATRVQANVRKHQAEADYQRQKLQAEKRLLQATADEEP--AIVEQQNMRMVDAQK 1300
                     5677899***********************999999877..556666666787776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1317 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2141  (0.119415); expected 358.6 (0.02)
Passed bias filter:                      688  (0.0383736); expected 358.6 (0.02)
Passed Vit filter:                        93  (0.00518713); expected 17.9 (0.001)
Passed Fwd filter:                        33  (0.00184059); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              19  [number of targets reported over threshold]
# CPU time: 1.18u 0.27s 00:00:01.45 Elapsed: 00:00:00.48
# Mc/sec: 8187.84
//
Query:       KOO23715.1  [L=349]
Description: hypothetical protein Ctob_005072 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    6.9e-08   32.2   0.0    8.8e-07   28.6   0.0    2.3  1  Glyco_transf_29  Glycosyltransferase family 29 (sialyltransfe


Domain annotation for each model (and alignments):
>> Glyco_transf_29  Glycosyltransferase family 29 (sialyltransferase)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.6   0.0   4.9e-11   8.8e-07      53     267 ..     148     347 ..     110     349 .] 0.73

  Alignments for each domain:
  == domain 1  score: 28.6 bits;  conditional E-value: 4.9e-11
  Glyco_transf_29  53 ckrCaVVGngGiLkgsgcGkeIDshdfViRcN...........laplegyeeDVGskttlvtmnpesiiekkfkkl.keldkktflvllpfkgr 134
                       +   ++Gng    g g G+ ID++  V+R+N           +ap  +y +DVG k +l ++   +++     kl +++ ++t+ vl++    
       KOO23715.1 148 AQGACIIGNGRSVLGVGAGPLIDRFATVVRFNdyvtvaepvgpNAPRPDYRSDVGEKVDLWVVSDWTCV-----KLiNKYPERTMPVLIATP-- 234
                      4455699*************************55555555555588899***************98888.....222233444444444443.. PP

  Glyco_transf_29 135 dllwlpafltkekvslraletlekkvkskiklnkekvlilnPdflr.yvakfwlkskglkakrpstGllaltlAlhlCdeVslyGFgpsedsek 227
                       + ++ +  +k+     ++  le++  +          ++  +f+  +v k++++++++  + ps+Gl+++ + ++      l GF    +  +
       KOO23715.1 235 -YYFMGKPYYKK-----RRAELEQDLTE--------EQLARCTFIPiEVVKNLVEANHFGDRWPSSGLITIAFFVSQGIRPVLHGFDF-FKAID 313
                      .44555555555.....33344444444........3444555555577777778888999*******999998888888889***77.66669 PP

  Glyco_transf_29 228 lslHYydkkkkkavkktavHdmpeEfkllkkLhkegvikl 267
                       + HY +++      +ta+H  +eE ++ ++L+++g + +
       KOO23715.1 314 GKIHYMEDT------HTANHHADEEERICRELVRAGSVSF 347
                      99*****93......5789*****************9876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (349 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       331  (0.0184617); expected 358.6 (0.02)
Passed bias filter:                      275  (0.0153383); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.28s 00:00:00.75 Elapsed: 00:00:00.44
# Mc/sec: 2383.61
//
Query:       KOO23716.1  [L=1049]
Description: ring u-box domain-containing protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.3e-28  100.0   0.0    2.8e-28   99.0   0.0    1.6  1  XRN_N       XRN 5'-3' exonuclease N-terminus
    1.3e-13   50.9  26.5    3.9e-09   36.6   4.3    3.4  3  IBR         IBR domain, a half RING-finger domain
    0.00075   18.6   0.0     0.0067   15.4   0.0    2.1  2  XRN_M       Xrn1 helical domain


Domain annotation for each model (and alignments):
>> XRN_N  XRN 5'-3' exonuclease N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   99.0   0.0   4.7e-32   2.8e-28       2     241 ..     227     460 ..     226     461 .. 0.88

  Alignments for each domain:
  == domain 1  score: 99.0 bits;  conditional E-value: 4.7e-32
                 XX-HHHHHHHHHSGGGEEE------SSSS-EEEEEEETHHHHHHHHS-SSS-......--SSHHHHHHHHHHHHHHHHHHH-EEEEEEEE------HHH CS
       XRN_N   2 GvpklfrwlserypkivkevieeeeeeekefdnLYlDmNgiihkcshkedkeekelskkpkteeeifkkifkyidrlvkivrprkllylavDGvaPraK 100
                 Gvp + +w++e  p+++ ev      ++ +  ++ +DmN+i+h++ ++           ++++++ +k   +++++ ++ v p ++++lavDG+aP aK
  KOO23716.1 227 GVPGFCTWVTETAPECLIEVP-----DGFSASVVAFDMNAILHTALRR-----------ATSSDDAIKLCYSKLHSTLRRVVPGSVVLLAVDGPAPLAK 309
                 9*************9999995.....345789999***********66...........56778889999999999999999***************** PP

                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-BB--------GGGSSTTSHHHHHHHHHHHHHHHHHHHH-GGGGG-EEEEE-TTS-S-HHHHHHHH CS
       XRN_N 101 mnqqRsRRfrsakeakeekeekeelkeelekeekeeeeeeekfdsnvitpGtefmeklsealkafikkklkedpawknlkvilsdaevpGEGEhKimef 199
                 +  q +RR ++ ++++ ++++k                 ++++ s +itpGt+fm+++++a+ +f+  +l    + + l+  +s+++v GEGE K++  
  KOO23716.1 310 LATQLKRRRKTFNKEAASSKKK----------------GAQAVSSLAITPGTRFMDDFENAMLYFCCAELAA-YRARGLTFWMSGSDVAGEGEIKLLGA 391
                 *********9998887776521................346799**************************93.33467********************* PP

                 HHHHH..........................TSTTS-TT-EEEEE---THHHHHHHHHT.-SSEEEEEE CS
       XRN_N 200 irkqr..........................skpeydpntrhviyglDaDLillsLath.epniliLre 241
                 +r+ +                          ++p+  ++++ v++g+D+DL+l +L++    ++++Lre
  KOO23716.1 392 LRQIEqaraqreqrgrasdareagrgasrtqASPSAARRSSVVLVGQDGDLVLQALTLSpSWQVSVLRE 460
                 **999889999999999999999999988877788888899***************9652678999998 PP

>> IBR  IBR domain, a half RING-finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.5   0.5     0.028   1.7e+02      13      28 ..      11      26 ..       1      35 [. 0.71
   2 !   36.6   4.3   6.5e-13   3.9e-09      13      62 .]      57     110 ..      45     110 .. 0.80
   3 !   22.0   7.5   2.4e-08   0.00014      14      58 ..     133     176 ..     121     190 .. 0.86

  Alignments for each domain:
  == domain 1  score: 2.5 bits;  conditional E-value: 0.028
         IBR 13 esdpnlkwCprpdCea 28
                ++ + +++C  pdC++
  KOO23716.1 11 NQRSAFVKCVHPDCGG 26
                345669********95 PP

  == domain 2  score: 36.6 bits;  conditional E-value: 6.5e-13
         IBR  13 esdpnlkwCprpdCeaiieksegcks.....vtCskCgfefCfnCkkewHeglsC 62 
                    +++++Cp+ +C+a++e  e+ +      ++Cs+C++  C++C+++wHe l+C
  KOO23716.1  57 PV-EKRIYCPSRECSAVFERPEEGEIdgwprAQCSHCHKPLCVRCGVPWHEALDC 110
                 44.459************888883335677799*******************999 PP

  == domain 3  score: 22.0 bits;  conditional E-value: 2.4e-08
         IBR  14 sdpnlkwCprpdCeaiiekseg..cksvtCskCgfefCfnCkkewHe 58 
                  d+ l+ Cp   C  ++e + +  c+ v+C+ Cg++fC+ C++++ +
  KOO23716.1 133 RDKGLRSCP--RCRELVERQGQdqCNFVECR-CGCAFCYACGVAYRS 176
                 46779****..9*****9988888999****.**********99855 PP

>> XRN_M  Xrn1 helical domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.1   0.0     0.052   3.1e+02      10      44 ..     593     622 ..     592     632 .. 0.76
   2 !   15.4   0.0   1.1e-06    0.0067     198     236 ..     752     791 ..     745     801 .. 0.87

  Alignments for each domain:
  == domain 1  score: 0.1 bits;  conditional E-value: 0.052
       XRN_M  10 DfvFlcFFvGNDFLPhlPsLeiregaidlllkvYk 44 
                 D + l+   GND+LP+     +re ++++  + Y+
  KOO23716.1 593 DLIVLSCLMGNDYLPK-----VREATFERCWSAYR 622
                 77889999*******7.....56666666666665 PP

  == domain 2  score: 15.4 bits;  conditional E-value: 1.1e-06
       XRN_M 198 qkYveGLcWvlrYYyqG.vaSWkWfyPyhyaPFaSDlknl 236
                  ++ +G++W+++ Y  G ++ ++W yP+  aP  S l+  
  KOO23716.1 752 AEFLRGVLWTVQTYADGsCPDYTWEYPFEHAPRSSQLVAF 791
                 57899***********95568**************99765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1049 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       981  (0.0547158); expected 358.6 (0.02)
Passed bias filter:                      411  (0.0229238); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.74u 0.29s 00:00:01.03 Elapsed: 00:00:00.47
# Mc/sec: 6749.99
//
Query:       KOO23717.1  [L=717]
Description: hypothetical protein Ctob_005071, partial [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00068   19.0   0.0     0.0014   18.0   0.0    1.5  1  EF-hand_5  EF hand
     0.0013   19.2   0.0     0.0026   18.1   0.0    1.5  1  EF-hand_7  EF-hand domain pair
     0.0015   17.9   0.0     0.0039   16.6   0.0    1.7  1  EF-hand_1  EF hand
  ------ inclusion threshold ------
      0.032   14.2   0.0      0.095   12.7   0.0    1.8  1  EF-hand_6  EF-hand domain
      0.035   14.0   0.0      0.072   13.0   0.0    1.5  1  EF-hand_8  EF-hand domain pair


Domain annotation for each model (and alignments):
>> EF-hand_5  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.0   0.0     4e-07    0.0014       5      25 .]     396     416 ..     393     417 .. 0.88

  Alignments for each domain:
  == domain 1  score: 18.0 bits;  conditional E-value: 4e-07
                 HHHH-SS-SSCE-HHHHHHHH CS
   EF-hand_5   5 FqaiDlNgDGkIskeELktlv 25 
                 F a D+N+DG+Is +E+ +lv
  KOO23717.1 396 FGATDVNNDGHISLDEFTQLV 416
                 7777*************9975 PP

>> EF-hand_7  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.1   0.0   7.4e-07    0.0026      33      70 ..     379     416 ..     358     417 .. 0.78

  Alignments for each domain:
  == domain 1  score: 18.1 bits;  conditional E-value: 7.4e-07
   EF-hand_7  33 qgagegsklsdeelellfkefDtdkdGvisfdEFlkly 70 
                 ++++ + ++ +e+  +lf   D ++dG is+dEF +l+
  KOO23717.1 379 DHWEAARESLREAASTLFGATDVNNDGHISLDEFTQLV 416
                 555777788899999*******************9985 PP

>> EF-hand_1  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   0.0   1.1e-06    0.0039       6      26 ..     396     416 ..     393     419 .. 0.87

  Alignments for each domain:
  == domain 1  score: 16.6 bits;  conditional E-value: 1.1e-06
                 HHHHTTTSSSEEEHHHHHHHH CS
   EF-hand_1   6 FrefDkDgdGkIdfeEfkell 26 
                 F   D+++dG+I+++Ef +l+
  KOO23717.1 396 FGATDVNNDGHISLDEFTQLV 416
                 6667*************9986 PP

>> EF-hand_6  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   2.7e-05     0.095       5      25 ..     395     415 ..     392     419 .. 0.89

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 2.7e-05
   EF-hand_6   5 aFklfDkdgdGkidaeElrka 25 
                 +F + D+++dG+i+ +E+ ++
  KOO23717.1 395 LFGATDVNNDGHISLDEFTQL 415
                 79999*************775 PP

>> EF-hand_8  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.0     2e-05     0.072      27      52 ..     391     416 ..     389     419 .. 0.88

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 2e-05
   EF-hand_8  27 evdilfrefDtdgdGkisfeEFcvll 52 
                 ++ +lf + D ++dG+is++EF +l+
  KOO23717.1 391 AASTLFGATDVNNDGHISLDEFTQLV 416
                 67899999**************9887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (717 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       491  (0.0273858); expected 358.6 (0.02)
Passed bias filter:                      355  (0.0198003); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.60u 0.27s 00:00:00.87 Elapsed: 00:00:00.43
# Mc/sec: 4976.88
//
Query:       KOO23718.1  [L=948]
Description: hypothetical protein Ctob_005073, partial [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.7e-08   34.4   0.2    6.3e-07   30.0   0.1    3.0  2  DUF4326   Domain of unknown function (DUF4326)


Domain annotation for each model (and alignments):
>> DUF4326  Domain of unknown function (DUF4326)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.5   0.0     0.058     1e+03      21      49 ..     425     459 ..     419     485 .. 0.64
   2 !   30.0   0.1   3.5e-11   6.3e-07      15      81 ..     570     667 ..     560     669 .. 0.79

  Alignments for each domain:
  == domain 1  score: 0.5 bits;  conditional E-value: 0.058
     DUF4326  21 lgNpFvvgqelgereevvekyreyleer........a 49 
                   NpF+++    ++++ + +++  l +          
  KOO23718.1 425 IQNPFQIQPA--QNQAQLSAFQLQLLQGhqagvqvvL 459
                 68***99998..5555566666665544355555541 PP

  == domain 2  score: 30.0 bits;  conditional E-value: 3.5e-11
     DUF4326  15 vgRgsklgNpFvvgqelgereevvekyreyleer...........................aekdee....lkaaleeLr.gkeLa..CwCk.pkpCHa 78 
                   R+s l NpF +g++ ++r+ v+++y+e+ ++r                           +         l++  +    g ++a  C C+ +k+CH 
  KOO23718.1 570 MRRPSILSNPFGMGKDESKRNLVCDAYQEWWRRRtvtvdeicvqfgivranswdgleiaasE----LrvrgLNQLAQIVSkGHRIAagCACPaDKRCHT 664
                 5799***************************9998888888888888877776666655432....1333344445555579999999**********9 PP

     DUF4326  79 dvl 81 
                 + +
  KOO23718.1 665 EHI 667
                 987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (948 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       469  (0.0261587); expected 358.6 (0.02)
Passed bias filter:                      414  (0.0230911); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.66u 0.27s 00:00:00.93 Elapsed: 00:00:00.42
# Mc/sec: 6794.74
//
Query:       KOO23719.1  [L=639]
Description: hypothetical protein Ctob_006169 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0049   16.9   0.3     0.0096   15.9   0.3    1.4  1  zf-BED     BED zinc finger
     0.0074   17.0   1.1      0.022   15.6   1.1    1.8  1  zf-C2H2_4  C2H2-type zinc finger
  ------ inclusion threshold ------
       0.21   12.1   5.5      0.064   13.7   1.9    2.1  2  zf-C2H2    Zinc finger, C2H2 type


Domain annotation for each model (and alignments):
>> zf-BED  BED zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.3   1.6e-06    0.0096      14      40 ..      12      35 ..       6      40 .. 0.86

  Alignments for each domain:
  == domain 1  score: 15.9 bits;  conditional E-value: 1.6e-06
                SS--EETTTTEE----SSTHHHHHHHH CS
      zf-BED 14 eqkavCryCgkilsrgggttnLkrHLr 40
                e+   C+yCg +ls++   ++L rHLr
  KOO23719.1 12 ENTFSCKYCGTQLSSR---NHLYRHLR 35
                67778**********9...*******7 PP

>> zf-C2H2_4  C2H2-type zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   1.1   3.7e-06     0.022       1      21 [.      15      35 ..      15      37 .. 0.94

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 3.7e-06
   zf-C2H2_4  1 fkCpiCgksFsskkaLlrHlk 21
                f C++Cg+  ss+++L rHl+
  KOO23719.1 15 FSCKYCGTQLSSRNHLYRHLR 35
                89*****************98 PP

>> zf-C2H2  Zinc finger, C2H2 type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   1.9   1.1e-05     0.064       1      21 [.      15      35 ..      15      36 .. 0.96
   2 ?   -2.0   0.1       1.1   6.4e+03      12      20 ..     104     112 ..     103     113 .. 0.82

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 1.1e-05
                EEETTTTEEESSHHHHHHHHH CS
     zf-C2H2  1 ykCpdCgksFkrksnLkrHir 21
                + C++Cg   +++ +L rH+r
  KOO23719.1 15 FSCKYCGTQLSSRNHLYRHLR 35
                89*****************99 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 1.1
                 SHHHHHHHH CS
     zf-C2H2  12 rksnLkrHi 20 
                 r+s+L rH 
  KOO23719.1 104 RRSELLRHT 112
                 789999995 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (639 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       506  (0.0282224); expected 358.6 (0.02)
Passed bias filter:                      419  (0.02337); expected 358.6 (0.02)
Passed Vit filter:                        48  (0.00267723); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.55u 0.26s 00:00:00.81 Elapsed: 00:00:00.41
# Mc/sec: 4667.60
//
Query:       KOO23720.1  [L=221]
Description: hypothetical protein Ctob_006167 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    0.00042   20.2   0.0       0.53   10.0   0.0    2.1  2  DUF3431   Protein of unknown function (DUF3431)


Domain annotation for each model (and alignments):
>> DUF3431  Protein of unknown function (DUF3431)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.0   0.0     3e-05      0.53      42      68 ..      29      55 ..       8      80 .. 0.83
   2 !    8.5   0.0   8.6e-05       1.5     132     177 ..     118     170 ..      84     205 .. 0.71

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 3e-05
     DUF3431 42 GreamaYltyiidnYdsLpdvvvFvha 68
                 re   +l+y++d++d+Lp v++++  
  KOO23720.1 29 SREPYGFLQYLLDFWDNLPPVTILTQD 55
                689999***************998765 PP

  == domain 2  score: 8.5 bits;  conditional E-value: 8.6e-05
     DUF3431 132 eafaelfeee.......evpevvaapcCaqFavsrerirkrpreeYvrlrqwl 177
                   ++++ +++       +  + v  p  a Favsr  +r++pr  Y++l ++ 
  KOO23720.1 118 YRWMSFVQQHllgtvpeNRSTLVHWPQDATFAVSRLVLRSQPRWMYEALLRMT 170
                 4455555433455444334667889999*******************997754 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (221 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       238  (0.0132746); expected 358.6 (0.02)
Passed bias filter:                      208  (0.0116013); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.27s 00:00:00.67 Elapsed: 00:00:00.43
# Mc/sec: 1548.59
//
Query:       KOO23721.1  [L=212]
Description: hypothetical protein Ctob_006166, partial [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.85    8.3   5.1        1.2    7.8   5.1    1.2  1  Dendrin   Nephrin and CD2AP-binding protein, Dendrin


Domain annotation for each model (and alignments):
>> Dendrin  Nephrin and CD2AP-binding protein, Dendrin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.8   5.1   6.8e-05       1.2     568     616 ..      96     142 ..      79     157 .. 0.74

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 6.8e-05
     Dendrin 568 htaPdsdsdeaeelsvrsgssdGsdteasgaswrnertlPgvgndspee 616
                   a d ++d+a+++s +  ss+ sd+e +  ++++  +  ++g  ++ +
  KOO23721.1  96 MHASDDEADDASDCSSQPPSSETSDAEHPDDAYEE-PAAAATGT-EGTD 142
                 468999***********************987753.33333332.2222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (212 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       734  (0.0409393); expected 358.6 (0.02)
Passed bias filter:                      480  (0.0267723); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.27s 00:00:00.70 Elapsed: 00:00:00.42
# Mc/sec: 1521.70
//
Query:       KOO23722.1  [L=1464]
Description: hypothetical protein Ctob_006168 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
  ------ inclusion threshold ------
      0.014   15.2   0.8      0.049   13.4   0.8    2.0  1  IQ            IQ calmodulin-binding motif


Domain annotation for each model (and alignments):
>> IQ  IQ calmodulin-binding motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.8   2.7e-06     0.049       5      19 ..    1151    1165 ..    1151    1167 .. 0.91

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 2.7e-06
                  HHHHHHHHHHHHHHH CS
          IQ    5 ikIQaawRGylaRkr 19  
                  ik+Qa++RG+laR r
  KOO23722.1 1151 IKLQARIRGFLARVR 1165
                  89***********87 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1464 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2681  (0.149534); expected 358.6 (0.02)
Passed bias filter:                      593  (0.0330749); expected 358.6 (0.02)
Passed Vit filter:                       147  (0.00819901); expected 17.9 (0.001)
Passed Fwd filter:                        60  (0.00334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 1.95u 0.38s 00:00:02.33 Elapsed: 00:00:00.62
# Mc/sec: 7085.79
//
Query:       KOO23723.1  [L=3278]
Description: armadillo beta-catenin-like repeat-containing protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   1.4e-202  650.5 190.8    4.6e-11   42.4   0.0   58.2 60  Arm              Armadillo/beta-catenin-like repeat
    1.5e-29  103.3   8.5      0.015   14.6   0.0   14.3 14  V-ATPase_H_N     V-ATPase subunit H
    1.6e-27   95.4  25.5    0.00022   21.2   0.3   17.4 20  Atx10homo_assoc  Spinocerebellar ataxia type 10 protein domai
    1.6e-22   80.3  12.1      0.096   12.7   0.0   14.6 16  Cnd1             non-SMC mitotic condensation complex subunit
    1.4e-14   54.2 176.2    5.9e-06   26.6   1.9   25.4 30  HEAT_2           HEAT repeats
    2.5e-11   42.9  21.1        1.8    7.1   0.1   11.7 10  Adaptin_N        Adaptin N terminal region
    1.6e-10   40.9  32.1      0.069   12.6   0.2   15.2 20  Arm_2            Armadillo-like
    1.4e-06   28.4  18.0      0.097   12.8   0.0    9.5 11  V-ATPase_H_C     V-ATPase subunit H
    2.4e-06   27.2  52.1       0.65    9.4   0.1   15.3 19  DUF5578          Family of unknown function (DUF5578)
    2.4e-06   27.9 156.3        2.2    8.9   0.3   31.9 32  HEAT_EZ          HEAT-like repeat
     0.0035   15.6   0.0        1.1    7.3   0.0    4.9  7  KAP              Kinesin-associated protein (KAP)
  ------ inclusion threshold ------
        0.1   12.5  28.7        8.1    6.4   0.0   10.5 12  DUF3361          Domain of unknown function (DUF3361)
       0.57    9.1   4.2         17    4.2   0.0    5.2  7  DUF913           Domain of Unknown Function (DUF913)


Domain annotation for each model (and alignments):
>> Arm  Armadillo/beta-catenin-like repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   0.2   5.1e-06     0.007       8      40 ..      59      91 ..      53      92 .. 0.88
   2 !   21.6   0.4   1.2e-07   0.00016       6      36 ..      99     129 ..      95     131 .. 0.94
   3 !    7.2   0.0    0.0038       5.2       8      25 ..     142     159 ..     142     175 .. 0.79
   4 ?    4.9   0.2     0.021        29       6      40 ..     182     214 ..     177     215 .. 0.78
   5 !   13.4   0.2   4.3e-05     0.059       3      40 ..     219     256 ..     217     257 .. 0.89
   6 !   15.3   0.7   1.1e-05     0.015       3      40 ..     261     298 ..     259     299 .. 0.90
   7 !    6.7   0.1    0.0057       7.9       2      36 ..     302     336 ..     301     336 .. 0.88
   8 !   25.4   0.0   7.2e-09   9.9e-06       2      40 ..     344     383 ..     343     384 .. 0.93
   9 ?    2.5   0.0      0.12   1.7e+02      16      39 ..     398     421 ..     394     422 .. 0.93
  10 ?   -0.1   0.0      0.79   1.1e+03      16      39 ..     435     458 ..     433     460 .. 0.89
  11 ?    3.4   0.0      0.06        82      16      35 ..     477     496 ..     467     498 .. 0.89
  12 !   22.4   0.1   6.5e-08   8.9e-05       4      40 ..     504     541 ..     502     542 .. 0.92
  13 !   13.3   0.1   4.7e-05     0.065       3      40 ..     546     584 ..     544     585 .. 0.87
  14 !   11.2   0.0   0.00022      0.31       1      40 [.     586     625 ..     586     626 .. 0.93
  15 !   10.0   0.2   0.00052      0.72       6      36 ..     633     664 ..     629     669 .. 0.90
  16 ?   -2.4   0.0       4.1   5.6e+03       3      32 ..     672     701 ..     671     709 .. 0.78
  17 !   11.2   0.1   0.00022       0.3      13      41 .]     718     746 ..     717     746 .. 0.95
  18 !   22.3   0.0   7.1e-08   9.8e-05       1      41 []     748     788 ..     748     788 .. 0.96
  19 ?    5.7   0.0     0.012        16       3      23 ..     791     814 ..     789     831 .. 0.76
  20 !   29.9   0.2   2.8e-10   3.8e-07       1      40 [.     842     881 ..     842     882 .. 0.98
  21 !    8.5   0.0    0.0015       2.1       2      23 ..     927     952 ..     926     967 .. 0.75
  22 ?   -0.2   0.0      0.82   1.1e+03       8      33 ..    1017    1042 ..    1011    1045 .. 0.75
  23 !   16.8   0.0   3.8e-06    0.0053       7      40 ..    1058    1091 ..    1052    1092 .. 0.90
  24 !    6.4   0.0    0.0071       9.8       3      22 ..    1095    1114 ..    1093    1119 .. 0.87
  25 ?    0.1   0.1       0.7   9.6e+02       1      20 [.    1135    1154 ..    1135    1154 .. 0.87
  26 !   27.6   0.0   1.4e-09     2e-06       2      41 .]    1279    1318 ..    1278    1318 .. 0.95
  27 !   16.0   0.0   6.9e-06    0.0095       8      40 ..    1326    1358 ..    1324    1359 .. 0.93
  28 !   18.6   0.5     1e-06    0.0014       8      40 ..    1410    1442 ..    1408    1443 .. 0.96
  29 !   13.1   0.1   5.4e-05     0.075       5      40 ..    1448    1483 ..    1444    1484 .. 0.91
  30 ?    3.5   0.0     0.057        79      18      41 .]    1498    1521 ..    1497    1521 .. 0.91
  31 !   26.0   0.1   4.6e-09   6.4e-06       5      40 ..    1527    1562 ..    1523    1563 .. 0.91
  32 !    6.3   0.0    0.0075        10       2      21 ..    1602    1621 ..    1601    1640 .. 0.84
  33 ?    5.7   0.0     0.012        16       3      30 ..    1647    1674 ..    1645    1675 .. 0.86
  34 ?    5.4   0.1     0.014        20       6      35 ..    1695    1725 ..    1690    1727 .. 0.72
  35 !   24.7   0.3   1.3e-08   1.7e-05       4      40 ..    1737    1773 ..    1734    1774 .. 0.92
  36 !   21.0   0.6   1.7e-07   0.00024       2      40 ..    1777    1816 ..    1776    1817 .. 0.94
  37 !    6.6   0.0    0.0062       8.5       1      37 [.    1819    1857 ..    1819    1861 .. 0.81
  38 !   11.5   0.2   0.00017      0.23       3      37 ..    1866    1900 ..    1864    1903 .. 0.91
  39 !    7.3   0.0    0.0036         5       4      22 ..    1946    1964 ..    1943    1969 .. 0.87
  40 ?   -3.6   0.0       9.7   1.3e+04      28      40 ..    1989    2001 ..    1988    2001 .. 0.87
  41 !   19.5   0.0   5.1e-07   0.00071       1      40 [.    2004    2042 ..    2004    2043 .. 0.94
  42 !   26.5   0.0   3.3e-09   4.5e-06       1      36 [.    2044    2079 ..    2044    2083 .. 0.94
  43 !    9.7   0.0   0.00063      0.87      12      36 ..    2101    2125 ..    2101    2125 .. 0.98
  44 !   16.7   0.0   4.1e-06    0.0056       2      36 ..    2169    2203 ..    2169    2207 .. 0.82
  45 ?    3.5   0.1     0.059        82      15      37 ..    2219    2241 ..    2217    2244 .. 0.90
  46 ?   -0.9   0.0       1.4   1.9e+03      16      35 ..    2266    2289 ..    2264    2290 .. 0.85
  47 ?    4.4   0.2     0.029        40       5      40 ..    2299    2336 ..    2295    2336 .. 0.92
  48 !   14.2   0.1   2.4e-05     0.033      12      41 .]    2349    2378 ..    2348    2378 .. 0.95
  49 ?   -1.9   0.1       2.9     4e+03      14      40 ..    2390    2416 ..    2388    2416 .. 0.68
  50 ?    3.0   0.0      0.08   1.1e+02       6      23 ..    2424    2441 ..    2419    2446 .. 0.80
  51 !    6.6   0.0    0.0061       8.3       4      22 ..    2512    2530 ..    2511    2553 .. 0.82
  52 !   23.1   0.1   3.8e-08   5.2e-05       2      41 .]    2555    2594 ..    2554    2594 .. 0.95
  53 !   24.6   0.1   1.3e-08   1.9e-05       3      41 .]    2598    2636 ..    2596    2636 .. 0.95
  54 ?   -2.1   0.9       3.2   4.4e+03      13      41 .]    2645    2673 ..    2643    2673 .. 0.86
  55 !   11.7   0.0   0.00015      0.21       1      22 [.    2675    2696 ..    2675    2701 .. 0.92
  56 !   23.1   0.0     4e-08   5.5e-05       1      41 []    2720    2760 ..    2720    2760 .. 0.95
  57 !   42.4   0.0   3.3e-14   4.6e-11       4      41 .]    2764    2801 ..    2763    2801 .. 0.97
  58 !   22.8   0.0   4.9e-08   6.8e-05       3      40 ..    2804    2841 ..    2802    2842 .. 0.91
  59 !   19.9   0.1   3.9e-07   0.00054       3      40 ..    2846    2883 ..    2844    2884 .. 0.93
  60 ?    2.9   0.0     0.088   1.2e+02      12      36 ..    2898    2922 ..    2892    2927 .. 0.83

  Alignments for each domain:
  == domain 1  score: 16.4 bits;  conditional E-value: 5.1e-06
                HHHTTHHHHHHHHTTTSSHHHHHHHHHHHHHHT CS
         Arm  8 vieaGavppLvrLLssedeevqeeAawALsNLa 40
                +  a+av pLv+LLss+    qe Aa++L+ L+
  KOO23723.1 59 ILAANAVAPLVKLLSSGTAHSQESAAATLGVLS 91
                5569*************************9886 PP

  == domain 2  score: 21.6 bits;  conditional E-value: 1.2e-07
                 HHHHHTTHHHHHHHHTTTSSHHHHHHHHHHH CS
         Arm   6 davieaGavppLvrLLssedeevqeeAawAL 36 
                  av+ aG++ pLv+LL+ ++++vqe+Aa+AL
  KOO23723.1  99 SAVVAAGGIVPLVTLLKMGSPKVQEVAASAL 129
                 79****************************9 PP

  == domain 3  score: 7.2 bits;  conditional E-value: 0.0038
                 HHHTTHHHHHHHHTT.TSS CS
         Arm   8 vieaGavppLvrLLs.sed 25 
                 +i+aGa+p+L++ L+ s +
  KOO23723.1 142 IIKAGAIPHLIAILKgS-S 159
                 79************952.3 PP

  == domain 4  score: 4.9 bits;  conditional E-value: 0.021
                 HHHHHTTHHHHHHHHTTTSSHHHHHHHHHHHHHHT CS
         Arm   6 davieaGavppLvrLLssedeevqeeAawALsNLa 40 
                 + +++aG +p L++LL     + q++Aa+AL+ La
  KOO23723.1 182 RSICNAGSIPLLLSLLG--AGKAQKPAASALAKLA 214
                 6699************9..4455788888887665 PP

  == domain 5  score: 13.4 bits;  conditional E-value: 4.3e-05
                 HHHHHHHHTTHHHHHHHHTTTSSHHHHHHHHHHHHHHT CS
         Arm   3 enkdavieaGavppLvrLLssedeevqeeAawALsNLa 40 
                 e   ++ eaG++ pL++LL+  d + q  Aa ALs +a
  KOO23723.1 219 EVQAQITEAGGIAPLLALLNGIDMDAQVSAADALSEMA 256
                 5667788***************************9876 PP

  == domain 6  score: 15.3 bits;  conditional E-value: 1.1e-05
                 HHHHHHHHTTHHHHHHHHTTTSSHHHHHHHHHHHHHHT CS
         Arm   3 enkdavieaGavppLvrLLssedeevqeeAawALsNLa 40 
                 e   a+ +aGa+ pL++LLss +   q  +++AL+ L 
  KOO23723.1 261 ETQSAIAKAGAISPLLALLSSRSAAAQLKSLAALAQLM 298
                 567899****************************9885 PP

  == domain 7  score: 6.7 bits;  conditional E-value: 0.0057
                 HHHHHHHHHTTHHHHHHHHTTTSSHHHHHHHHHHH CS
         Arm   2 senkdavieaGavppLvrLLssedeevqeeAawAL 36 
                  +n d   ++G+v+p v LL+s   ev   Aa+AL
  KOO23723.1 302 RDNQDSTAKLGGVKPIVGLLESNTAEVASCAACAL 336
                 678888899************99999999888887 PP

  == domain 8  score: 25.4 bits;  conditional E-value: 7.2e-09
                 HHHHHHHHHTTHHHHHHHHTT.TSSHHHHHHHHHHHHHHT CS
         Arm   2 senkdavieaGavppLvrLLs.sedeevqeeAawALsNLa 40 
                 +   ++++++G++ +L +L++ s de+v++e+a+A++ L+
  KOO23723.1 344 PAIQQTIVDLGGISQLRNLIKlSSDEKVKTEVAGAIWSLS 383
                 56689********************************997 PP

  == domain 9  score: 2.5 bits;  conditional E-value: 0.12
                 HHHHHTTTSSHHHHHHHHHHHHHH CS
         Arm  16 pLvrLLssedeevqeeAawALsNL 39 
                  Lv+LL +++ + ++ +++A+s+L
  KOO23723.1 398 SLVALLGTGSARARTHVLGAISYL 421
                 59********************98 PP

  == domain 10  score: -0.1 bits;  conditional E-value: 0.79
                 HHHHHTTTSSHHHHHHHHHHHHHH CS
         Arm  16 pLvrLLssedeevqeeAawALsNL 39 
                  L++LL +++++ qe A  AL+ L
  KOO23723.1 435 LLIELLINGSPQAQERASKALGTL 458
                 79***************9999866 PP

  == domain 11  score: 3.4 bits;  conditional E-value: 0.06
                 HHHHHTTTSSHHHHHHHHHH CS
         Arm  16 pLvrLLssedeevqeeAawA 35 
                 +Lv+LL+s + e +  A+w 
  KOO23723.1 477 ALVTLLKSNNSEAKDYALWS 496
                 8******************6 PP

  == domain 12  score: 22.4 bits;  conditional E-value: 6.5e-08
                 HHHHHH.HTTHHHHHHHHTTTSSHHHHHHHHHHHHHHT CS
         Arm   4 nkdavi.eaGavppLvrLLssedeevqeeAawALsNLa 40 
                 n++ +i  aG+vppL++ Ls+  + ++e+Aa+AL+ La
  KOO23723.1 504 NIQSIIsMAGGVPPLIHQLSDARVLIKEQAAAALAKLA 541
                 77888889**************************9887 PP

  == domain 13  score: 13.3 bits;  conditional E-value: 4.7e-05
                 HHHHHHHHTTHHHHHHHHTT.TSSHHHHHHHHHHHHHHT CS
         Arm   3 enkdavieaGavppLvrLLs.sedeevqeeAawALsNLa 40 
                 e + ++ e+G+++pL++LL+   +++ ++  a AL+NLa
  KOO23723.1 546 ETCALITECGGIKPLINLLQlKAHPKARQHGANALANLA 584
                 5567888**************999999999999999998 PP

  == domain 14  score: 11.2 bits;  conditional E-value: 0.00022
                 SHHHHHHHHHTTHHHHHHHHTTTSSHHHHHHHHHHHHHHT CS
         Arm   1 nsenkdavieaGavppLvrLLssedeevqeeAawALsNLa 40 
                 n++ + +++++ +++pLv  L++e +++++ +a+AL+ L+
  KOO23723.1 586 NPDACHEIVSSSGIRPLVLALDDEAQQTKKYVARALASLS 625
                 5777889*****************************9997 PP

  == domain 15  score: 10.0 bits;  conditional E-value: 0.00052
                 HHHHHTTHHHHHHHHTT.TSSHHHHHHHHHHH CS
         Arm   6 davieaGavppLvrLLs.sedeevqeeAawAL 36 
                 +++ eaGa+ pLv+LL+    +e qeeAa+AL
  KOO23723.1 633 ITIAEAGAILPLVALLEgACGPEAQEEAAGAL 664
                 5799*************99999*********9 PP

  == domain 16  score: -2.4 bits;  conditional E-value: 4.1
                 HHHHHHHHTTHHHHHHHHTTTSSHHHHHHH CS
         Arm   3 enkdavieaGavppLvrLLssedeevqeeA 32 
                 +n+ a+  +G++  Lv LL   +++ ++ A
  KOO23723.1 672 GNRVAITGSGGIGWLVMLLGINNQRARQHA 701
                 5899999***********997776666665 PP

  == domain 17  score: 11.2 bits;  conditional E-value: 0.00022
                 HHHHHHHHTTTSSHHHHHHHHHHHHHHTT CS
         Arm  13 avppLvrLLssedeevqeeAawALsNLaa 41 
                 ++  Lv++L++   + qe+Aa+ L+NLa+
  KOO23723.1 718 IINKLVDMLQDSGKDAQEQAAASLANLAR 746
                 5789***********************97 PP

  == domain 18  score: 22.3 bits;  conditional E-value: 7.1e-08
                 SHHHHHHHHHTTHHHHHHHHTTTSSHHHHHHHHHHHHHHTT CS
         Arm   1 nsenkdavieaGavppLvrLLssedeevqeeAawALsNLaa 41 
                 ++en++ +++a+++ pL++ L+s++ + +e+A++A+  L++
  KOO23723.1 748 SEENRKSIVDANGIVPLLEILDSTSNKAKENAVGAIKELCR 788
                 579************************************97 PP

  == domain 19  score: 5.7 bits;  conditional E-value: 0.012
                 HHHHHHH.HTTHHHHHHHHTT..T CS
         Arm   3 enkdavi.eaGavppLvrLLs..s 23 
                 +n ++++ +aG++p Lv L+s  s
  KOO23723.1 791 KNNQTIVtRAGGIPKLVGLMSgfS 814
                 54556666***********98664 PP

  == domain 20  score: 29.9 bits;  conditional E-value: 2.8e-10
                 SHHHHHHHHHTTHHHHHHHHTTTSSHHHHHHHHHHHHHHT CS
         Arm   1 nsenkdavieaGavppLvrLLssedeevqeeAawALsNLa 40 
                 n++n da+ eaGa++pLv +L+s + ++q  Aa+AL+NLa
  KOO23723.1 842 NPKNQDAISEAGAIQPLVMMLTSYSSQMQASAAAALANLA 881
                 799************************************8 PP

  == domain 21  score: 8.5 bits;  conditional E-value: 0.0015
                 HHHHHHHHHTTHHHHHHHHTT....T CS
         Arm   2 senkdavieaGavppLvrLLs....s 23 
                 ++nkd++++ G++++L+ LL     +
  KOO23723.1 927 QGNKDVIVKVGGLDQLLGLLVtgktD 952
                 68******************853333 PP

  == domain 22  score: -0.2 bits;  conditional E-value: 0.82
                  HHHTTHHHHHHHHTTTSSHHHHHHHH CS
         Arm    8 vieaGavppLvrLLssedeevqeeAa 33  
                  + + G++ppL++ L+s+   +q +Aa
  KOO23723.1 1017 IAKIGGIPPLITWLNSTMAITQAAAA 1042
                  55669******999887776666665 PP

  == domain 23  score: 16.8 bits;  conditional E-value: 3.8e-06
                  HHHHTTHHHHHHHHTTTSSHHHHHHHHHHHHHHT CS
         Arm    7 avieaGavppLvrLLssedeevqeeAawALsNLa 40  
                   + ++ a+p+L++L +  + e qe A++AL++ a
  KOO23723.1 1058 FLAKSDAIPALLALVTKSSAEAQEYATRALWYVA 1091
                  567999*************************987 PP

  == domain 24  score: 6.4 bits;  conditional E-value: 0.0071
                  HHHHHHHHTTHHHHHHHHTT CS
         Arm    3 enkdavieaGavppLvrLLs 22  
                  e ++++ ++G+++p+v++L 
  KOO23723.1 1095 EIRQQIASSGGIKPFVSMLA 1114
                  679***************97 PP

  == domain 25  score: 0.1 bits;  conditional E-value: 0.7
                  SHHHHHHHHHTTHHHHHHHH CS
         Arm    1 nsenkdavieaGavppLvrL 20  
                  n++  +++ e+G++ pLv+L
  KOO23723.1 1135 NPDVSIQIAEQGGILPLVKL 1154
                  56777899**********98 PP

  == domain 26  score: 27.6 bits;  conditional E-value: 1.4e-09
                  HHHHHHHHHTTHHHHHHHHTTTSSHHHHHHHHHHHHHHTT CS
         Arm    2 senkdavieaGavppLvrLLssedeevqeeAawALsNLaa 41  
                   e  +a++eaGavp+L+++++++++  qe Aa+A+++Laa
  KOO23723.1 1279 VEMQKAIVEAGAVPALLAFIRTGSQLGQEHAARAIWHLAA 1318
                  67899*********************************96 PP

  == domain 27  score: 16.0 bits;  conditional E-value: 6.9e-06
                  HHHTTHHHHHHHHTTTSSHHHHHHHHHHHHHHT CS
         Arm    8 vieaGavppLvrLLssedeevqeeAawALsNLa 40  
                  +ieaG++p Lv+LL+ ++++ qe A++ +s La
  KOO23723.1 1326 IIEAGGIPDLVQLLKMGSPRAQEMATAGISDLA 1358
                  89*************************999776 PP

  == domain 28  score: 18.6 bits;  conditional E-value: 1e-06
                  HHHTTHHHHHHHHTTTSSHHHHHHHHHHHHHHT CS
         Arm    8 vieaGavppLvrLLssedeevqeeAawALsNLa 40  
                  + +aG+v pLv+LLss+  + +e+ a+AL++La
  KOO23723.1 1410 IAKAGVVVPLVALLSSGTAQARENTASALWHLA 1442
                  679*****************************8 PP

  == domain 29  score: 13.1 bits;  conditional E-value: 5.4e-05
                  HHHHHHTTHHHHHHHHTTTSSHHHHHHHHHHHHHHT CS
         Arm    5 kdavieaGavppLvrLLssedeevqeeAawALsNLa 40  
                  + a+ ++G++ pLv+ L+++ e+ +  Aa AL+ La
  KOO23723.1 1448 RLAIAKCGGISPLVAILDDGTEQARAHAANALARLA 1483
                  56788***************************9998 PP

  == domain 30  score: 3.5 bits;  conditional E-value: 0.057
                  HHHTTTSSHHHHHHHHHHHHHHTT CS
         Arm   18 vrLLssedeevqeeAawALsNLaa 41  
                  v LL ++++++q+ Aa+ +s La+
  KOO23723.1 1498 VGLLGNKKTGTQRRAARVISDLAS 1521
                  6799***************99885 PP

  == domain 31  score: 26.0 bits;  conditional E-value: 4.6e-09
                  HHHHHHTTHHHHHHHHTTTSSHHHHHHHHHHHHHHT CS
         Arm    5 kdavieaGavppLvrLLssedeevqeeAawALsNLa 40  
                    ++++aGa+ pLv+LLs +  +v+ee+a+ALs +a
  KOO23723.1 1527 PVLIVNAGAISPLVNLLSGGAADVKEEVARALSTIA 1562
                  5689****************************9886 PP

  == domain 32  score: 6.3 bits;  conditional E-value: 0.0075
                  HHHHHHHHHTTHHHHHHHHT CS
         Arm    2 senkdavieaGavppLvrLL 21  
                   en+  +++aGavp+Lv+  
  KOO23723.1 1602 AENCVSIVRAGAVPRLVTQV 1621
                  689999***********865 PP

  == domain 33  score: 5.7 bits;  conditional E-value: 0.012
                  HHHHHHHHTTHHHHHHHHTTTSSHHHHH CS
         Arm    3 enkdavieaGavppLvrLLssedeevqe 30  
                  + ++ +  ++a++pLv++L+ ++ ++qe
  KOO23723.1 1647 DGIRNIAGSNAIRPLVSMLTIGKRGIQE 1674
                  56778899************99999998 PP

  == domain 34  score: 5.4 bits;  conditional E-value: 0.014
                  HHHHHTTHHHHHHHHTT.TSSHHHHHHHHHH CS
         Arm    6 davieaGavppLvrLLs.sedeevqeeAawA 35  
                  +++   G++ pLv LL    +   + +Aa+A
  KOO23723.1 1695 MQILIEGGIGPLVVLLGkESSNAAKAAAAGA 1725
                  567789***********65555555566665 PP

  == domain 35  score: 24.7 bits;  conditional E-value: 1.3e-08
                  HHHHHHHTTHHHHHHHHTTTSSHHHHHHHHHHHHHHT CS
         Arm    4 nkdavieaGavppLvrLLssedeevqeeAawALsNLa 40  
                    +av++aGa++pLv+LLs +d+ +++ Aa+A++ L+
  KOO23723.1 1737 LQKAVCDAGAIRPLVALLSEDDDIIRKRAAGAIAALC 1773
                  5789****************************98776 PP

  == domain 36  score: 21.0 bits;  conditional E-value: 1.7e-07
                  HHHHHHHHHTTHHHHHHHHTT.TSSHHHHHHHHHHHHHHT CS
         Arm    2 senkdavieaGavppLvrLLs.sedeevqeeAawALsNLa 40  
                   en d+v+++ ++  Lv+LL  s +eev  eAa+AL+ La
  KOO23723.1 1777 AENQDTVVKSKCIAKLVSLLAsSVHEEVSAEAAAALAILA 1816
                  69**********************************8765 PP

  == domain 37  score: 6.6 bits;  conditional E-value: 0.0062
                  SHHHHHHHHHTTHHHHHHHHTT..TSSHHHHHHHHHHHH CS
         Arm    1 nsenkdavieaGavppLvrLLs..sedeevqeeAawALs 37  
                  n +n d + + G++++L++ L+   + ++ + +Aa+AL+
  KOO23723.1 1819 NKKNQDKLASEGGIEALINILKseGGGDNAKGAAASALG 1857
                  5689999***************77777777777777776 PP

  == domain 38  score: 11.5 bits;  conditional E-value: 0.00017
                  HHHHHHHHTTHHHHHHHHTTTSSHHHHHHHHHHHH CS
         Arm    3 enkdavieaGavppLvrLLssedeevqeeAawALs 37  
                  en  a+ +aG++ pLv+ L   + e +e+Aa+AL+
  KOO23723.1 1866 ENQAAIANAGGIAPLVAVLGLSSHEAREQAATALA 1900
                  8999****************999999999999996 PP

  == domain 39  score: 7.3 bits;  conditional E-value: 0.0036
                  HHHHHHHTTHHHHHHHHTT CS
         Arm    4 nkdavieaGavppLvrLLs 22  
                  n +++ +aG+++ Lv+LL+
  KOO23723.1 1946 NQRTIAKAGGIELLVSLLD 1964
                  8899**************8 PP

  == domain 40  score: -3.6 bits;  conditional E-value: 9.7
                  HHHHHHHHHHHHT CS
         Arm   28 vqeeAawALsNLa 40  
                  vq++ a+AL+ +a
  KOO23723.1 1989 VQKDMAAALWSMA 2001
                  89*******9775 PP

  == domain 41  score: 19.5 bits;  conditional E-value: 5.1e-07
                  SHHHHHHHHHTTHHHHHHHHTTTSSHHHHHHHHHHHHHHT CS
         Arm    1 nsenkdavieaGavppLvrLLssedeevqeeAawALsNLa 40  
                  ++en +++ + G+++pL+++L+ ++ evq+++a+AL+ L+
  KOO23723.1 2004 SPENQMTIAKVGGLEPLIAMLD-GHAEVQTDVAGALWALS 2042
                  699*******************.*************9665 PP

  == domain 42  score: 26.5 bits;  conditional E-value: 3.3e-09
                  SHHHHHHHHHTTHHHHHHHHTTTSSHHHHHHHHHHH CS
         Arm    1 nsenkdavieaGavppLvrLLssedeevqeeAawAL 36  
                  +++n+++v ++ ++ppLv+LL++++ + qe Aa+AL
  KOO23723.1 2044 DEHNRETVGKLHGIPPLVALLKTGSHSAQETAAGAL 2079
                  579********************************9 PP

  == domain 43  score: 9.7 bits;  conditional E-value: 0.00063
                  THHHHHHHHTTTSSHHHHHHHHHHH CS
         Arm   12 GavppLvrLLssedeevqeeAawAL 36  
                  G++p Lv+L + ++++ +e+Aa+AL
  KOO23723.1 2101 GGIPLLVSLFDGGSVDSCEQAAGAL 2125
                  9***********************8 PP

  == domain 44  score: 16.7 bits;  conditional E-value: 4.1e-06
                  HHHHHHHHHTTHHHHHHHHTTTSSHHHHHHHHHHH CS
         Arm    2 senkdavieaGavppLvrLLssedeevqeeAawAL 36  
                  +en+ a+ +aGavp Lvr L+s++e+    Aa AL
  KOO23723.1 2169 PENRSAIAKAGAVPELVRQLESGSEKSMGMAAQAL 2203
                  79*******************99987655555555 PP

  == domain 45  score: 3.5 bits;  conditional E-value: 0.059
                  HHHHHHTTTSSHHHHHHHHHHHH CS
         Arm   15 ppLvrLLssedeevqeeAawALs 37  
                  + Lv+LL s+++ v++ A  AL+
  KOO23723.1 2219 QELVKLLGSDNVAVRKRASEALT 2241
                  569***************99985 PP

  == domain 46  score: -0.9 bits;  conditional E-value: 1.4
                  HHHHHTT....TSSHHHHHHHHHH CS
         Arm   16 pLvrLLs....sedeevqeeAawA 35  
                  pLv+LL+    ++ +e qe A++ 
  KOO23723.1 2266 PLVNLLKdglkDGRVEAQEYALRS 2289
                  9******99999999999999875 PP

  == domain 47  score: 4.4 bits;  conditional E-value: 0.029
                  HHHHHHTTHHHHHHHHTT..TSSHHHHHHHHHHHHHHT CS
         Arm    5 kdavieaGavppLvrLLs..sedeevqeeAawALsNLa 40  
                  +++++eaG++  L++ L+    +   qe Aa+ Ls La
  KOO23723.1 2299 REVIVEAGCIVTLIESLRlgKLSAVAQEHAAAVLSGLA 2336
                  789*******************************9876 PP

  == domain 48  score: 14.2 bits;  conditional E-value: 2.4e-05
                  THHHHHHHHTTTSSHHHHHHHHHHHHHHTT CS
         Arm   12 GavppLvrLLssedeevqeeAawALsNLaa 41  
                   +++pLv+LL++++ e +e Aa +L+ La+
  KOO23723.1 2349 KGIEPLVTLLTNGNAEAKEHAANCLAQLAR 2378
                  69************************9996 PP

  == domain 49  score: -1.9 bits;  conditional E-value: 2.9
                  HHHHHHHTTTSSHHHHHHHHHHHHHHT CS
         Arm   14 vppLvrLLssedeevqeeAawALsNLa 40  
                  vp++v+ L +++ +  e+Aa+ALs +a
  KOO23723.1 2390 VPAFVKWLANPNLGPPEVAARALSEIA 2416
                  555555555555555589999999986 PP

  == domain 50  score: 3.0 bits;  conditional E-value: 0.08
                  HHHHHTTHHHHHHHHTTT CS
         Arm    6 davieaGavppLvrLLss 23  
                   ++ e Ga+ pLv++ ss
  KOO23723.1 2424 TQIAEEGAISPLVAMVSS 2441
                  5788**********9985 PP

  == domain 51  score: 6.6 bits;  conditional E-value: 0.0061
                  HHHHHHHTTHHHHHHHHTT CS
         Arm    4 nkdavieaGavppLvrLLs 22  
                  n  ++ e  ++ppLv+LLs
  KOO23723.1 2512 NQAMIAEEEGIPPLVALLS 2530
                  567888************8 PP

  == domain 52  score: 23.1 bits;  conditional E-value: 3.8e-08
                  HHHHHHHHHTTHHHHHHHHTTTSSHHHHHHHHHHHHHHTT CS
         Arm    2 senkdavieaGavppLvrLLssedeevqeeAawALsNLaa 41  
                  +en  a+ +aG++ pLv+LL se+ ++q+ Aa+AL+ La+
  KOO23723.1 2555 EENQTAIAKAGGIAPLVALLVSEHSTTQRFAAAALQSLAR 2594
                  68999********************************996 PP

  == domain 53  score: 24.6 bits;  conditional E-value: 1.3e-08
                  HHHHHHHHTTHHHHHHHHTTTSSHHHHHHHHHHHHHHTT CS
         Arm    3 enkdavieaGavppLvrLLssedeevqeeAawALsNLaa 41  
                  en +a+ +aGa+ pLv+ L se+e++q  A++AL  La+
  KOO23723.1 2598 ENQIAISKAGAIAPLVDILGSENEGTQVHAVGALLSLAS 2636
                  7999******************************99885 PP

  == domain 54  score: -2.1 bits;  conditional E-value: 3.2
                  HHHHHHHHTTTSSHHHHHHHHHHHHHHTT CS
         Arm   13 avppLvrLLssedeevqeeAawALsNLaa 41  
                  +v++Lv  L+  + + q +Aa AL+ Laa
  KOO23723.1 2645 VVKRLVPVLDLRSATAQMNAAEALALLAA 2673
                  6888888888899999********98875 PP

  == domain 55  score: 11.7 bits;  conditional E-value: 0.00015
                  SHHHHHHHHHTTHHHHHHHHTT CS
         Arm    1 nsenkdavieaGavppLvrLLs 22  
                  ++en++a+ +a av+pLvrLL 
  KOO23723.1 2675 SDENRKAITDADAVEPLVRLLG 2696
                  689******************7 PP

  == domain 56  score: 23.1 bits;  conditional E-value: 4e-08
                  SHHHHHHHHHTTHHHHHHHHTTTSSHHHHHHHHHHHHHHTT CS
         Arm    1 nsenkdavieaGavppLvrLLssedeevqeeAawALsNLaa 41  
                  +s+nk  +++ G+v pL+++Lss++  +q+ A +AL  L+a
  KOO23723.1 2720 SSDNKSSIVKVGGVGPLIAMLSSDSIATQTYASGALLQLSA 2760
                  689*********************************98875 PP

  == domain 57  score: 42.4 bits;  conditional E-value: 3.3e-14
                  HHHHHHHTTHHHHHHHHTTTSSHHHHHHHHHHHHHHTT CS
         Arm    4 nkdavieaGavppLvrLLssedeevqeeAawALsNLaa 41  
                  n+ ++ eaGa+ppLv+LLss ++++q+ Aa+AL+NLa+
  KOO23723.1 2764 NRSTIAEAGAIPPLVELLSSHSPDTQKSAAGALWNLAS 2801
                  899*********************************96 PP

  == domain 58  score: 22.8 bits;  conditional E-value: 4.9e-08
                  HHHHHHHHTTHHHHHHHHTTTSSHHHHHHHHHHHHHHT CS
         Arm    3 enkdavieaGavppLvrLLssedeevqeeAawALsNLa 40  
                  e k+++++aGa+p+Lv+ L++++ +++e A++ Ls La
  KOO23723.1 2804 ESKIQMRDAGAIPRLVHVLRCKSADTREHAVAVLSALA 2841
                  77999*****************************9776 PP

  == domain 59  score: 19.9 bits;  conditional E-value: 3.9e-07
                  HHHHHHHHTTHHHHHHHHTTTSSHHHHHHHHHHHHHHT CS
         Arm    3 enkdavieaGavppLvrLLssedeevqeeAawALsNLa 40  
                  +nk+++ +a a++pL++LL+++  ++q+ Aa++L+ L+
  KOO23723.1 2846 QNKKLIYDAAALEPLIALLDDQRSMTQRHAACCLWALS 2883
                  59999*****************************9665 PP

  == domain 60  score: 2.9 bits;  conditional E-value: 0.088
                  THHHHHHHHTTTSSHHHHHHHHHHH CS
         Arm   12 GavppLvrLLssedeevqeeAawAL 36  
                  Ga+p L ++L+ +d e++  Aa+AL
  KOO23723.1 2898 GAIPKLANMLNKDDLETRGFAAAAL 2922
                  9**************9987777776 PP

>> V-ATPase_H_N  V-ATPase subunit H
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.0      0.53   7.2e+02     112     200 ..      52     156 ..      15     181 .. 0.54
   2 !    5.1   0.2    0.0085        12     104     211 ..     266     373 ..     207     403 .. 0.62
   3 ?   -0.4   0.3      0.39   5.4e+02     105     200 ..     432     565 ..     416     635 .. 0.47
   4 !    7.5   0.1    0.0016       2.2     160     206 ..     698     775 ..     562     811 .. 0.63
   5 ?    4.1   0.0     0.017        24      68     206 ..     819     952 ..     777     958 .. 0.73
   6 !   10.3   0.0   0.00022      0.31     113     200 ..    1030    1114 ..    1019    1143 .. 0.78
   7 ?   -2.2   0.0       1.4   1.9e+03     125     200 ..    1268    1340 ..    1262    1376 .. 0.77
   8 ?   -0.1   0.0      0.34   4.6e+02      80     156 ..    1464    1545 ..    1419    1682 .. 0.70
   9 !   13.5   0.0   2.4e-05     0.033     105     207 ..    1746    1847 ..    1726    1870 .. 0.82
  10 !    5.4   0.0    0.0071       9.8      93     161 ..    1902    2068 ..    1886    2205 .. 0.58
  11 !    9.3   0.0   0.00046      0.64     105     201 ..    2217    2321 ..    2198    2350 .. 0.77
  12 !    6.7   0.0    0.0027       3.8     106     209 ..    2390    2535 ..    2337    2626 .. 0.70
  13 !   14.6   0.0   1.1e-05     0.015      97     201 ..    2634    2746 ..    2609    2759 .. 0.83
  14 !   10.0   0.0   0.00027      0.37     105     249 ..    2773    2908 ..    2748    2913 .. 0.79

  Alignments for each domain:
  == domain 1  score: -0.8 bits;  conditional E-value: 0.53
  V-ATPase_H_N 112 llnrqddfivllalrllakllvqgkkksnklvesaLnrllqlLssqlss..................................stnevieiavrllq 174
                   + ++q d+    a+  l+kll+ g  +s++                  s                                   + +v+e+a+ +l+
    KOO23723.1  52 HGQHQPDILAANAVAPLVKLLSSGTAHSQE------------------SaaatlgvlslgkvdaqsavvaaggivplvtllkmGSPKVQEVAASALA 130
                   333333344444444444444444444444..................0333333333333333334555555555555555544456688888888 PP

  V-ATPase_H_N 175 ellrtkeyRelfveadgvstlisilr 200
                   +l    ++ + +++a  ++ li+il+
    KOO23723.1 131 ALDADISHQHGIIKAGAIPHLIAILK 156
                   88888888888888888888888874 PP

  == domain 2  score: 5.1 bits;  conditional E-value: 0.0085
  V-ATPase_H_N 104 d....pwkpflkllnrqddfivllalrllakllvqgkkksnklvesaLnrllqlLssqlssstnevieiavrllqellrtk.eyRelfveadgvstl 195
                         ++p+l ll+++ +  +l++l  la+l++ +++++       L  +  ++  +l+s+t+ev ++a+ +l e  r + ++ +++v+  g+s+l
    KOO23723.1 266 IakagAISPLLALLSSRSAAAQLKSLAALAQLMRGNRDNQDS--TAKLGGVKPIVG-LLESNTAEVASCAACALMEFSRANpAIQQTIVDLGGISQL 359
                   022235666666666666666666666666666666665555..344433333322.3444788888888888888888652567788888899998 PP

  V-ATPase_H_N 196 isilrstvanstrvgi 211
                    +++  + +++++v++
    KOO23723.1 360 RNLI--KLSSDEKVKT 373
                   8888..4555555555 PP

  == domain 3  score: -0.4 bits;  conditional E-value: 0.39
  V-ATPase_H_N 105 pwkpflkllnrqddfivllalrllakllvqgkkksnklv.esaLnrllqlLssqlss..................................stnevi 166
                   + + +++ll +   + ++ a++ l +l+ +++  ++ +    +   l++lL+s+ s+                                  s     
    KOO23723.1 432 LTQLLIELLINGSPQAQERASKALGTLVHENPSAHEVIAkAGDPTALVTLLKSNNSEakdyalwsfslsietniqsiismaggvpplihqlS----D 524
                   44444446666666666777777766666666665554442333444444444333333455555555554444444444444444443331....0 PP

  V-ATPase_H_N 167 .......eiavrllqellrtkeyRelfveadgvstlisilr 200
                          + a+ l +    +ke   l+ e  g+++li++l+
    KOO23723.1 525 arvlikeQAAAALAKLAFENKETCALITECGGIKPLINLLQ 565
                   33333422222222222233333334444444444444443 PP

  == domain 4  score: 7.5 bits;  conditional E-value: 0.0016
  V-ATPase_H_N 160 s..............................stnevieiavrllqellrt.keyRelfveadgvstlisilrstvans 206
                                                  s  + +e a+ +l++l+r+ +e R+ +v+a+g+ +l++il st +++
    KOO23723.1 698 RqhaegalvrlsiendnrvliinklvdmlqdSGKDAQEQAAASLANLAREsEENRKSIVDANGIVPLLEILDSTSNKA 775
                   044444444444444444444444444443333344578888888888862568999999999999999995443332 PP

  == domain 5  score: 4.1 bits;  conditional E-value: 0.017
  V-ATPase_H_N  68 skedtlqyiLvlidDllsedksrvelflslakkeeqdpwkpflkllnrqddfivllalrllakllvqgkkksnklv.esaLnrllqlLssqlssstn 163
                   +k++ l ++ +l +D l+e   +    ++ a +e    ++p++ +l++  ++++  a+  la+l+  + ++++ +    a+  ll+ +++  ++ + 
    KOO23723.1 819 NKDNSLVQLCTLAADALQEMARGNPKNQD-AISEA-GAIQPLVMMLTSYSSQMQASAAAALANLAQNHIENQTVIArTGAIVPLLTGMREGSEAAKD 913
                   78888888999999999998766665555.44344.499*****99999********9999999877766666655666677777777775555555 PP

  V-ATPase_H_N 164 evieiavrllqellrtkeyRelfveadgvstlisilrstvans 206
                      e+a+  l+    ++  + ++v++ g+ +l+ +l +t++ +
    KOO23723.1 914 ---ECAAAILALATDHQGNKDVIVKVGGLDQLLGLL-VTGKTD 952
                   ...99***************************9988.555444 PP

  == domain 6  score: 10.3 bits;  conditional E-value: 0.00022
  V-ATPase_H_N  113 lnrqddfivllalrllakllvqgkkksnklv.esaLnrllqlLssqlssstnevieiavrllqellrtkeyRelfveadgvstlisilr 200 
                    ln++ ++++  a+  +  l++ + +++  l  ++a++ ll+l+++    s++e +e a+r+l  +++++e+R+++ ++ g+++++s+l 
    KOO23723.1 1030 LNSTMAITQAAAAHAVLCLACDNTNTQAFLAkSDAIPALLALVTK----SSAEAQEYATRALWYVASQEEIRQQIASSGGIKPFVSMLA 1114
                    555556666667777777777766665555569999******987....34556899*****************************994 PP

  == domain 7  score: -2.2 bits;  conditional E-value: 1.4
  V-ATPase_H_N  125 lrllakllvqgkkksnklv.esaLnrllqlLssqlssstnevieiavrllqellrtkeyRelfveadgvstlisilr 200 
                    +  la ++ ++ ++++ +v   a++ ll+++++  +      +e a+r++  l+   e++++++ea g++ l+++l+
    KOO23723.1 1268 AITLADIAYKNVEMQKAIVeAGAVPALLAFIRTGSQL----GQEHAARAIWHLAALFEVHSIIIEAGGIPDLVQLLK 1340
                    5566666666666666666778889999999984444....247899999999999999***********9999995 PP

  == domain 8  score: -0.1 bits;  conditional E-value: 0.34
  V-ATPase_H_N   80 idD.llsedksrvelflslakkeeqd...pwkpflkllnrqddfivllalrllakllvqgkkksnklv.esaLnrllqlLss 156 
                    +dD   + + + +++++ la ++e++   ++k  + ll ++   +++ a+r++  l++  + +   +v   a+  l++lLs 
    KOO23723.1 1464 LDDgTEQARAHAANALARLATENEDSqsqIAKNCVGLLGNKKTGTQRRAARVISDLASGDPGSPVLIVnAGAISPLVNLLSG 1545
                    4554555555666666666555555555677777777777777777777777777766555544444444444444444444 PP

  == domain 9  score: 13.5 bits;  conditional E-value: 2.4e-05
  V-ATPase_H_N  105 pwkpflkllnrqddfivllalrllakllvqgkkksnklv.esaLnrllqlLssqlssstnevieiavrllqel.lrtkeyRelfveadgvstlis 197 
                     + p++ ll+++dd+i + a+  +a l v +++++ ++v ++ + +l++lL s+ +++   v + a+ +l+ l l +k+    + ++ g++ li+
    KOO23723.1 1746 AIRPLVALLSEDDDIIRKRAAGAIAALCVGSAENQDTVVkSKCIAKLVSLLASSVHEE---VSAEAAAALAILaLNNKKNQDKLASEGGIEALIN 1837
                    7899*******************************998899999********988885...4455666666652677788888888********* PP

  V-ATPase_H_N  198 ilrstvanst 207 
                    il+s+++ ++
    KOO23723.1 1838 ILKSEGGGDN 1847
                    **87766555 PP

  == domain 10  score: 5.4 bits;  conditional E-value: 0.0071
  V-ATPase_H_N   93 lflslakkeeqdpwkpflkllnrqddfivllalrllakllvqgkkksnklv.esaLnrllqlLss.qlss......................... 160 
                    l l+ + k+e+ ++  ++ ll ++d++   +a+  + +++++++ ++ ++     ++ l++lL    +++                         
    KOO23723.1 1902 LALD-NTKNEEAIALFLVSLLGSEDKQASTKAALAVSRFARASASNQRTIAkAGGIELLVSLLDVpGAKAaaggrqspvsraaldvalvqkdmaa 1995
                    3333.344444466666669999999999999999999999999999997763334444444444322224467777777776666666666666 PP

  V-ATPase_H_N  161 ........................................................................s 161 
                                                                                            s
    KOO23723.1 1996 alwsmaynspenqmtiakvgglepliamldghaevqtdvagalwalsddehnretvgklhgipplvallktgS 2068
                    6666666666666666666666666666554444444444444444444444444444444444444444440 PP

  == domain 11  score: 9.3 bits;  conditional E-value: 0.00046
  V-ATPase_H_N  105 pwkpflkllnrqddfivllalrllakllvqgkkksnklv......esaLnrllqlLssqlssstnevieiavrllqellrtkeyRelfveadgvs 193 
                      + ++kll +++  + + a+  l+ +++  k + +  +      ++ +  l++lL++ l++   e +e a+r+l + ++  + Re++vea ++ 
    KOO23723.1 2217 ATQELVKLLGSDNVAVRKRASEALTCMAADDKHSTTS-KakksgpSDSFAPLVNLLKDGLKDGRVEAQEYALRSLLA-ASDTASREVIVEAGCIV 2309
                    6677888888888888888888888887766554444.34789999****************************976.567789*********** PP

  V-ATPase_H_N  194 tlisilr....s 201 
                    tli++lr    s
    KOO23723.1 2310 TLIESLRlgklS 2321
                    ****99655541 PP

  == domain 12  score: 6.7 bits;  conditional E-value: 0.0027
  V-ATPase_H_N  106 wkpflkllnrqddfivllalrllakllvqgkkksnklv.esaLnrllqlLssqlss....................................... 160 
                    +  f+k l +++   ++ a+r l  ++ +++++++++  e a+  l++++ss ++                                        
    KOO23723.1 2390 VPAFVKWLANPNLGPPEVAARALSEIALENSDTQTQIAeEGAISPLVAMVSSVTDLergsigaaevpvgnpparvsvqllpscgatrasppsvvs 2484
                    33466666667777777777777777777777777766556666666666664333557777778888888877777777666666666655554 PP

  V-ATPase_H_N  161 ...stnevi......eiavrllqellrtkeyRelfve.adgvstlisilrstvanstrv 209 
                            +      ++a+ +l++l++++ + ++++  ++g+++l+++l+     +t+v
    KOO23723.1 2485 ntaL----TtalmksNVAAGALATLAKHNLINQAMIAeEEGIPPLVALLS----LKTAV 2535
                    4430....155556689999999999999999988887999999999884....33333 PP

  == domain 13  score: 14.6 bits;  conditional E-value: 1.1e-05
  V-ATPase_H_N   97 lakkeeqd...pwkpflkllnrqddfivllalrllakllvqgkkksnklv.esaLnrllqlLssqlssstnevieiavrllqellrtkeyRelfv 187 
                    la ++ ++   ++k ++ +l+ + +  ++ a+  la l++ ++++ + ++  +a++ l++lL +         +e a+  l+ l+r+++ ++ +v
    KOO23723.1 2634 LASHDVSSrnaVVKRLVPVLDLRSATAQMNAAEALALLAARSDENRKAITdADAVEPLVRLLGDGRRVRAGTPQERAAAVLADLARSSDNKSSIV 2728
                    4444444445699999999*****************************9989999*********9999889999********************* PP

  V-ATPase_H_N  188 eadgvstlisilr....s 201 
                    ++ gv++li++l+    +
    KOO23723.1 2729 KVGGVGPLIAMLSsdsiA 2746
                    **********99533332 PP

  == domain 14  score: 10.0 bits;  conditional E-value: 0.00027
  V-ATPase_H_N  105 pwkpflkllnrqddfivllalrllakllvqgkkksnklvesaLnrllqlLssqlssstnevieiavrllqellrtk.eyRelfveadgvstlisi 198 
                     + p+++ll++    +++ a+  l +l++ ++ k +     a++rl+++L+ + ++ t+   e av  l++l+r++ + ++l+ +a+ +++li++
    KOO23723.1 2773 AIPPLVELLSSHSPDTQKSAAGALWNLASSAESKIQMRDAGAIPRLVHVLRCKSAD-TR---EHAVAVLSALARSQgQNKKLIYDAAALEPLIAL 2863
                    55677777777777777788888888887777777776688888998888864443.45...89**********99467889999********** PP

  V-ATPase_H_N  199 lrstvanstrvgiQlqYqvllclWlLsFekkiaeelvkkk.elipllvdilr 249 
                    l     +++r+ +Q   ++  clW Ls  k+++ +    + + ip+l++ l 
    KOO23723.1 2864 L-----DDQRSMTQR--HAACCLWALSDGKDGVYDKAIAEgGAIPKLANMLN 2908
                    *.....788888887..8999******9999988877777788988888775 PP

>> Atx10homo_assoc  Spinocerebellar ataxia type 10 protein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.0       1.1   1.6e+03       7      34 ..     168     195 ..     164     200 .. 0.90
   2 !    9.6   0.0   0.00065      0.89       8      35 ..     209     236 ..     202     246 .. 0.86
   3 !    9.0   0.0   0.00099       1.4       8      70 ..     251     311 ..     245     324 .. 0.86
   4 ?    1.3   0.0      0.25   3.4e+02      41      69 ..     443     471 ..     410     484 .. 0.75
   5 !   13.0   0.1   5.8e-05     0.081       2      69 ..     530     596 ..     529     619 .. 0.90
   6 !   21.2   0.3   1.6e-07   0.00022       8      68 ..     740     798 ..     734     801 .. 0.92
   7 !    8.5   0.1    0.0015         2      12      69 ..     838     893 ..     831     898 .. 0.83
   8 ?   -2.3   0.0       3.5   4.8e+03       2      38 ..     912     948 ..     911     978 .. 0.67
   9 ?   -1.3   0.0       1.7   2.3e+03       9      69 ..    1003    1061 ..     997    1077 .. 0.70
  10 ?    5.0   0.0     0.018        24       8      37 ..    1270    1299 ..    1265    1319 .. 0.79
  11 ?   -1.0   0.0       1.3   1.8e+03      38      69 ..    1464    1495 ..    1447    1497 .. 0.82
  12 !    9.9   0.0   0.00052      0.72       8      69 ..    1726    1785 ..    1724    1798 .. 0.84
  13 !    9.9   0.0   0.00053      0.73       7      69 ..    1810    1873 ..    1804    1878 .. 0.88
  14 ?    1.9   0.0      0.17   2.3e+02      15      68 ..    1863    1914 ..    1848    1938 .. 0.85
  15 ?    1.1   0.0      0.28   3.9e+02       7      37 ..    1995    2025 ..    1989    2088 .. 0.81
  16 ?   -3.7   0.0       8.9   1.2e+04      53      65 ..    2125    2137 ..    2117    2158 .. 0.59
  17 ?   -1.6   0.0       2.1   2.9e+03       7      33 ..    2410    2436 ..    2408    2441 .. 0.86
  18 ?   -3.2   0.0       6.6   9.1e+03      52      69 ..    2501    2518 ..    2496    2527 .. 0.60
  19 ?   -0.0   0.0      0.65     9e+02      17      69 ..    2555    2605 ..    2550    2614 .. 0.81
  20 ?    0.4   0.0      0.49   6.8e+02       2      56 ..    2830    2882 ..    2829    2887 .. 0.82

  Alignments for each domain:
  == domain 1  score: -0.8 bits;  conditional E-value: 1.1
  Atx10homo_assoc   7 rllgnlvyknkevqdkvreldgleliLs 34 
                      + ++n++  + evq  + + ++++l+Ls
       KOO23723.1 168 QAIANAAAFSCEVQRSICNAGSIPLLLS 195
                      57999999999***************98 PP

  == domain 2  score: 9.6 bits;  conditional E-value: 0.00065
  Atx10homo_assoc   8 llgnlvyknkevqdkvreldgleliLsq 35 
                       l+ l+++nkevq ++ e +g++ +L  
       KOO23723.1 209 ALAKLAHDNKEVQAQITEAGGIAPLLAL 236
                      699*******************999875 PP

  == domain 3  score: 9.0 bits;  conditional E-value: 0.00099
  Atx10homo_assoc   8 llgnlvyknkevqdkvreldgleliLsqcniDdnnPfirewailairnLlegneenqelvaeL 70 
                       l+ ++ +n e+q+ + + ++++ +L   +        +  ++ a+ +L+ gn++nq+  a+L
       KOO23723.1 251 ALSEMACDNAETQSAIAKAGAISPLLALLSSR--SAAAQLKSLAALAQLMRGNRDNQDSTAKL 311
                      6899999*******************987655..5566677888999***********99988 PP

  == domain 4  score: 1.3 bits;  conditional E-value: 0.25
  Atx10homo_assoc  41 nnPfirewailairnLlegneenqelvae 69 
                        P  +e+a  a+  L+++n+ ++e++a+
       KOO23723.1 443 GSPQAQERASKALGTLVHENPSAHEVIAK 471
                      46889999999999999999999999987 PP

  == domain 5  score: 13.0 bits;  conditional E-value: 5.8e-05
  Atx10homo_assoc   2 KrelvrllgnlvyknkevqdkvreldgleliLsqcniDdnnPfirewailairnLlegneenqelvae 69 
                      K++  + l+ l+++nke++  + e++g++ +++  ++   +P  r+++  a+ nL  +  + +e+v++
       KOO23723.1 530 KEQAAAALAKLAFENKETCALITECGGIKPLINLLQLK-AHPKARQHGANALANLATNPDACHEIVSS 596
                      67777899************************999986.57****************99999999875 PP

  == domain 6  score: 21.2 bits;  conditional E-value: 1.6e-07
  Atx10homo_assoc   8 llgnlvyknkevqdkvreldgleliLsqcniDdnnPfirewailairnLlegneenqelva 68 
                       l+nl+ +++e+++ +++ +g+  +L+   +D+     +e a+ ai+ L+ ++++nq +v 
       KOO23723.1 740 SLANLARESEENRKSIVDANGIVPLLE--ILDSTSNKAKENAVGAIKELCRNSKNNQTIVT 798
                      699***********************9..578999999********************996 PP

  == domain 7  score: 8.5 bits;  conditional E-value: 0.0015
  Atx10homo_assoc  12 lvyknkevqdkvreldgleliLsqcniDdnnPfirewailairnLlegneenqelvae 69 
                      ++  n+++qd + e ++++ +       +    ++  a  a+ nL ++  enq ++a+
       KOO23723.1 838 MARGNPKNQDAISEAGAIQPLVMML--TSYSSQMQASAAAALANLAQNHIENQTVIAR 893
                      566799***********98876553..3445569999*******************97 PP

  == domain 8  score: -2.3 bits;  conditional E-value: 3.5
  Atx10homo_assoc   2 KrelvrllgnlvyknkevqdkvreldgleliLsqcni 38 
                      K e+ + +  l+ +++ ++d +++ +gl  +L   ++
       KOO23723.1 912 KDECAAAILALATDHQGNKDVIVKVGGLDQLLGLLVT 948
                      6777778888888999999999999999888876544 PP

  == domain 9  score: -1.3 bits;  conditional E-value: 1.7
  Atx10homo_assoc    9 lgnlvyknkevqdkvreldgleliLsqcniDdnnPfirewailairnLlegneenqelvae 69  
                        ++ v ++ ++q  + + +g++ +++  n  +   + +  a  a+  L  +n + q+++a+
       KOO23723.1 1003 CSSFVSDSATNQVAIAKIGGIPPLITWLN--STMAITQAAAAHAVLCLACDNTNTQAFLAK 1061
                       56677778888888888888888876544..445556666666666677777777777765 PP

  == domain 10  score: 5.0 bits;  conditional E-value: 0.018
  Atx10homo_assoc    8 llgnlvyknkevqdkvreldgleliLsqcn 37  
                        l+ ++ykn e+q+ ++e ++++++L  ++
       KOO23723.1 1270 TLADIAYKNVEMQKAIVEAGAVPALLAFIR 1299
                       58999********************98665 PP

  == domain 11  score: -1.0 bits;  conditional E-value: 1.3
  Atx10homo_assoc   38 iDdnnPfirewailairnLlegneenqelvae 69  
                       +Dd     r +a  a+  L  +ne++q+ +a+
       KOO23723.1 1464 LDDGTEQARAHAANALARLATENEDSQSQIAK 1495
                       68888888999999999999999999999875 PP

  == domain 12  score: 9.9 bits;  conditional E-value: 0.00052
  Atx10homo_assoc    8 llgnlvyknkevqdkvreldgleliLsqcniDdnnPfirewailairnLlegneenqelvae 69  
                       ll+ ++ ++ + q+ v + +++  +    +  +++++ir++a  ai  L+ g++enq+ v +
       KOO23723.1 1726 LLALMSGHQVDLQKAVCDAGAIRPLVALLS--EDDDIIRKRAAGAIAALCVGSAENQDTVVK 1785
                       677777788888999999999999887665..5568*********************99865 PP

  == domain 13  score: 9.9 bits;  conditional E-value: 0.00053
  Atx10homo_assoc    7 rllgnlvyknkevqdkvreldgleliLsqcniDdnnPfirewailairnLlegne.enqelvae 69  
                       + l+ l+ +nk++qdk+ +++g+e++++  + +   +  +  a  a+  L  g + enq+ +a+
       KOO23723.1 1810 AALAILALNNKKNQDKLASEGGIEALINILKSEGGGDNAKGAAASALGALASGKHyENQAAIAN 1873
                       5799**************************9999999999999999999998764489998876 PP

  == domain 14  score: 1.9 bits;  conditional E-value: 0.17
  Atx10homo_assoc   15 knkevqdkvreldgleliLsqcniDdnnPfirewailairnLlegneenqelva 68  
                       k+ e+q  + + +g++ +     + +++   re+a  a+  L  +n +n e +a
       KOO23723.1 1863 KHYENQAAIANAGGIAPLVAVLGLSSHE--AREQAATALAALALDNTKNEEAIA 1914
                       6778999999999999999988888887..69*******************997 PP

  == domain 15  score: 1.1 bits;  conditional E-value: 0.28
  Atx10homo_assoc    7 rllgnlvyknkevqdkvreldgleliLsqcn 37  
                       + l +++y+++e+q ++ + +gle ++    
       KOO23723.1 1995 AALWSMAYNSPENQMTIAKVGGLEPLIAMLD 2025
                       556689999************9999887655 PP

  == domain 16  score: -3.7 bits;  conditional E-value: 8.9
  Atx10homo_assoc   53 irnLlegneenqe 65  
                       +  L+ +n  nq 
       KOO23723.1 2125 LIALCVQNVTNQI 2137
                       5555555555553 PP

  == domain 17  score: -1.6 bits;  conditional E-value: 2.1
  Atx10homo_assoc    7 rllgnlvyknkevqdkvreldgleliL 33  
                       r l+ ++ +n+++q ++ e+++++ + 
       KOO23723.1 2410 RALSEIALENSDTQTQIAEEGAISPLV 2436
                       57899999*************998775 PP

  == domain 18  score: -3.2 bits;  conditional E-value: 6.6
  Atx10homo_assoc   52 airnLlegneenqelvae 69  
                       a+  L ++n  nq+++ae
       KOO23723.1 2501 ALATLAKHNLINQAMIAE 2518
                       455566666666666654 PP

  == domain 19  score: -0.0 bits;  conditional E-value: 0.65
  Atx10homo_assoc   17 kevqdkvreldgleliLsqcniDdnnPfirewailairnLlegneenqelvae 69  
                       +e+q  + + +g++ +    +   ++   +  a  a++ L  +  enq  +++
       KOO23723.1 2555 EENQTAIAKAGGIAPLVALLVS--EHSTTQRFAAAALQSLARDHIENQIAISK 2605
                       6788888888998888776664..4567899999**************99987 PP

  == domain 20  score: 0.4 bits;  conditional E-value: 0.49
  Atx10homo_assoc    2 KrelvrllgnlvyknkevqdkvreldgleliLsqcniDdnnPfirewailairnL 56  
                       +++ v++l+ l+ ++ ++++ + +  +le ++    +Dd+  + + +a  ++  L
       KOO23723.1 2830 REHAVAVLSALARSQGQNKKLIYDAAALEPLIA--LLDDQRSMTQRHAACCLWAL 2882
                       678899999999999999999999999999886..57999999999999998776 PP

>> Cnd1  non-SMC mitotic condensation complex subunit 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.2   0.0      0.25   3.5e+02      25      78 ..     109     166 ..      91     181 .. 0.82
   2 ?    1.9   0.1      0.15   2.1e+02      39     137 ..     204     308 ..     201     337 .. 0.68
   3 ?    2.0   0.0      0.14   1.9e+02      37     143 ..     328     438 ..     313     455 .. 0.69
   4 !    9.2   0.0   0.00084       1.2      23     138 ..     515     636 ..     509     641 .. 0.82
   5 ?    2.7   0.1     0.087   1.2e+02      23      90 ..     719     791 ..     697     803 .. 0.58
   6 ?    3.6   0.0     0.044        60      50     139 ..     845     934 ..     842     938 .. 0.78
   7 ?    1.4   0.0      0.21   2.9e+02      25     133 ..     899    1013 ..     894    1020 .. 0.80
   8 !    6.5   0.0    0.0058         8      24     113 ..    1417    1510 ..    1413    1521 .. 0.80
   9 ?    2.0   0.0      0.14   1.9e+02      41     132 ..    1512    1604 ..    1508    1619 .. 0.77
  10 !   12.7   0.0     7e-05     0.096      23      92 ..    1747    1822 ..    1738    1851 .. 0.86
  11 ?   -2.3   0.1         3   4.1e+03      36      88 ..    1890    1942 ..    1877    1952 .. 0.75
  12 ?   -1.7   0.0       1.9   2.6e+03      60     125 ..    2218    2292 ..    2202    2307 .. 0.54
  13 ?    1.9   0.0      0.15   2.1e+02      23      97 ..    2351    2427 ..    2346    2449 .. 0.80
  14 !    9.8   0.0   0.00055      0.76      51     156 ..    2558    2664 ..    2546    2668 .. 0.89
  15 ?    3.5   0.0     0.047        64      42     131 ..    2755    2848 ..    2735    2856 .. 0.67
  16 !   10.2   0.0   0.00041      0.56      23     103 ..    2857    2943 ..    2852    2969 .. 0.81

  Alignments for each domain:
  == domain 1  score: 1.2 bits;  conditional E-value: 0.25
        Cnd1  25 pLrkrLkDedpyVRktaaivvakL...ilndm.vkekgflselaklleDenprVvana 78 
                 pL + Lk  +p V++ aa ++a L   i+++  +++ g + +l  +l+ ++   +a a
  KOO23723.1 109 PLVTLLKMGSPKVQEVAASALAALdadISHQHgIIKAGAIPHLIAILKGSSGAAQAFA 166
                 7788888899*****************8888637777799999999887766555555 PP

  == domain 2  score: 1.9 bits;  conditional E-value: 0.15
        Cnd1  39 ktaaivvakL.ilnd....mvkekgflselaklleDenprVvanalaalteiseksenaiyn.llpdiisklsdalnecsewgqitilefLlsyipkdk 131
                 k aa ++akL ++n+     + e g ++ l+ ll+  +   + +a  al+e++  + ++     +   is l++ l + s ++q + l +L++ +  ++
  KOO23723.1 204 KPAASALAKLaHDNKevqaQITEAGGIAPLLALLNGIDMDAQVSAADALSEMACDNAETQSAiAKAGAISPLLALLSSRSAAAQLKSLAALAQLMRGNR 302
                 77999999998444434446788899999999996555555555778899998885444444044668999999999999999*999999999998888 PP

        Cnd1 132 qeaesl 137
                  +++s 
  KOO23723.1 303 DNQDST 308
                 744443 PP

  == domain 3  score: 2.0 bits;  conditional E-value: 0.14
        Cnd1  37 VRktaaivvakL.....ilndmvkekgflselakll.eDenprVvanalaalteiseksenaiynllpdiisklsdalnecsewgqitilefLlsyipk 129
                 V  +aa ++ +        ++++ + g +s+l++l+   ++++V + +  a+  +se +  +i +++ +++s+l++ l + s  +++++l +++    +
  KOO23723.1 328 VASCAACALMEFsranpAIQQTIVDLGGISQLRNLIkLSSDEKVKTEVAGAIWSLSEDT--EIKKSFASSLSSLVALLGTGSARARTHVLGAISYLGLD 424
                 55555555555554344334456677778888888877788888888888888888876..78899999999999888899999999999998776665 PP

        Cnd1 130 dkqeaeslveklcp 143
                 ++ ++ +l++ l++
  KOO23723.1 425 NQDNQVTLTQLLIE 438
                 55555666666655 PP

  == domain 4  score: 9.2 bits;  conditional E-value: 0.00084
        Cnd1  23 vepLrkrLkDedpyVRktaaivvakL.ilnd....mvkekgflselakll.eDenprVvanalaalteiseksenaiynllpdiisklsdalnecsewg 115
                 v+pL ++L+D    ++++aa ++akL ++n+    ++ e g ++ l +ll    +p+ ++   +al +++++ +     + ++ i  l+ al++  +++
  KOO23723.1 515 VPPLIHQLSDARVLIKEQAAAALAKLaFENKetcaLITECGGIKPLINLLqLKAHPKARQHGANALANLATNPDACHEIVSSSGIRPLVLALDDEAQQT 613
                 689***********************9544445556889999999999997788999999999999999999634444444566888888999999999 PP

        Cnd1 116 qitilefLlsyipkdkqeaeslv 138
                  +++ ++L+s  + +++++ +++
  KOO23723.1 614 KKYVARALASLSKGQQSTQITIA 636
                 99999999999988888666665 PP

  == domain 5  score: 2.7 bits;  conditional E-value: 0.087
        Cnd1  23 vepLrkrLkDedpyVRktaaivvakL.....ilndmvkekgflselaklleDenprVvanalaalteisekse 90 
                 +++L   L+D+    +++aa  +a+L      +++ + + + +  l+++l+ ++++  +na+ a++e+ ++s+
  KOO23723.1 719 INKLVDMLQDSGKDAQEQAAASLANLareseENRKSIVDANGIVPLLEILDSTSNKAKENAVGAIKELCRNSK 791
                 3445555555555555555555555555444333334444445555555555555555555555555555533 PP

  == domain 6  score: 3.6 bits;  conditional E-value: 0.044
        Cnd1  50 lndmvkekgflselaklleDenprVvanalaalteisek..senaiynllpdiisklsdalnecsewgqitilefLlsyipkdkqeaeslve 139
                 ++d + e g ++ l  +l+  +++ +a+a aal +++++  + n+++      i  l++ + e se++  +   ++l   ++ +  +++++ 
  KOO23723.1 845 NQDAISEAGAIQPLVMMLTSYSSQMQASAAAALANLAQNhiE-NQTVIARTGAIVPLLTGMREGSEAAKDECAAAILALATDHQG-NKDVIV 934
                 578999*********************************954.555555555555555588888888888888888877666555.555555 PP

  == domain 7  score: 1.4 bits;  conditional E-value: 0.21
        Cnd1   25 pLrkrLkDedpyVRktaaivvakL.....ilndmvkekgflselakll....eDenprVvanalaalteiseksenaiynllpdiisklsdalnecs 112 
                  pL ++++  ++  +  +a +++ L      ++d++ + g l++l+ ll    +D++++ va +laal   +  + ++i + l  ++s  s+     s
  KOO23723.1  899 PLLTGMREGSEAAKDECAAAILALatdhqGNKDVIVKVGGLDQLLGLLvtgkTDKSQECVAGTLAALASKHVDNRQLIAKRLVGLVSGSSA---ARS 992 
                  66677777777777888888888886666667777777889999999988888****************9999999999999999999995...578 PP

        Cnd1  113 ewgqitilefLlsyipkdkqe 133 
                   ++   +l++ +s++++++ +
  KOO23723.1  993 SDCAERVLKACSSFVSDSATN 1013
                  888889999999998888774 PP

  == domain 8  score: 6.5 bits;  conditional E-value: 0.0058
        Cnd1   24 epLrkrLkDedpyVRktaaivvakL.ilnd...mvkekgflselaklleDenprVvanalaalteiseksenaiynllpdiisklsdalnecse 113 
                   pL + L+   ++ R+++a ++ +L ++ +    + + g +s l  +l+D  ++ +a a +al  +++++e+   ++ ++++  l ++ +  ++
  KOO23723.1 1417 VPLVALLSSGTAQARENTASALWHLaLDGQirlAIAKCGGISPLVAILDDGTEQARAHAANALARLATENEDSQSQIAKNCVGLLGNKKTGTQR 1510
                  57777788888889***********644443334667789*****************************9999999999999999876554444 PP

  == domain 9  score: 2.0 bits;  conditional E-value: 0.14
        Cnd1   41 aaivvakL.....ilndmvkekgflselaklleDenprVvanalaalteiseksenaiynllpdiisklsdalnecsewgqitilefLlsyipkdkq 132 
                  aa v++ L      ++ ++ + g +s l +ll+   + V + +  al+ i+ +s+++ + + + ++  l     + + ++q ++ ++Ll+  ++ ++
  KOO23723.1 1512 AARVISDLasgdpGSPVLIVNAGAISPLVNLLSGGAADVKEEVARALSTIALNSPSTQLAIASGLVELLG----TGTAESQEHVSQLLLTLAKDAEN 1604
                  66667777443333445789999******************************99888887777777777....66888888888888877766655 PP

  == domain 10  score: 12.7 bits;  conditional E-value: 7e-05
        Cnd1   23 vepLrkrLkDedpyVRktaaivvakL.....ilndmvkekgflselakll.eDenprVvanalaalteiseksena 92  
                  + pL + L+ +d  +Rk aa ++a L      ++d+v +++ +++l +ll +  +++V+a a aal  ++ +++++
  KOO23723.1 1747 IRPLVALLSEDDDIIRKRAAGAIAALcvgsaENQDTVVKSKCIAKLVSLLaSSVHEEVSAEAAAALAILALNNKKN 1822
                  67999*********************999877888999999*********777789********999888776544 PP

  == domain 11  score: -2.3 bits;  conditional E-value: 3
        Cnd1   36 yVRktaaivvakLilndmvkekgflselaklleDenprVvanalaalteisek 88  
                    R++aa ++a L l ++  e+ +   l +ll  e+++ ++ a +a +  ++ 
  KOO23723.1 1890 EAREQAATALAALALDNTKNEEAIALFLVSLLGSEDKQASTKAALAVSRFARA 1942
                  56999999999998888888888888888888888888888887777766655 PP

  == domain 12  score: -1.7 bits;  conditional E-value: 1.9
        Cnd1   60 lselaklleDenprVvanalaalteisekse.........naiynllpdiisklsdalnecsewgqitilefLls 125 
                   +el kll  +n  V++ a  alt ++  ++         +    ++  +++ l+d l++   ++q + l++Ll 
  KOO23723.1 2218 TQELVKLLGSDNVAVRKRASEALTCMAADDKhsttskakkSGPSDSFAPLVNLLKDGLKDGRVEAQEYALRSLLA 2292
                  456667777777777777777777666664422222221111233444444444445555555555555555555 PP

  == domain 13  score: 1.9 bits;  conditional E-value: 0.15
        Cnd1   23 vepLrkrLkDedpyVRktaaivvakLilnd..mvkekgflselaklleDenprVvanalaalteiseksenaiynll 97  
                  +epL + L+  ++  +++aa ++a+L ++          +  + k l ++n    + a  al+ei+ +++++  ++ 
  KOO23723.1 2351 IEPLVTLLTNGNAEAKEHAANCLAQLARHAgaSLDIAAAVPAFVKWLANPNLGPPEVAARALSEIALENSDTQTQIA 2427
                  7899999*******************554423677778999999999999999999999999999988766665555 PP

  == domain 14  score: 9.8 bits;  conditional E-value: 0.00055
        Cnd1   51 ndmvkekgflselaklleDenprVvanalaalteisek.senaiynllpdiisklsdalnecsewgqitilefLlsyipkdkqeaeslveklcprlq 146 
                  ++ + + g ++ l  ll  e+++ +  a aal+ +++   en+i  ++   i  l+d l + +e +q++ + +Lls  + d +  + +v++l+p l 
  KOO23723.1 2558 QTAIAKAGGIAPLVALLVSEHSTTQRFAAAALQSLARDhIENQIAISKAGAIAPLVDILGSENEGTQVHAVGALLSLASHDVSSRNAVVKRLVPVLD 2654
                  4567788899999************************98779999999999*******************************************999 PP

        Cnd1  147 hansavvlaa 156 
                        +++a
  KOO23723.1 2655 LRSATAQMNA 2664
                  9888888776 PP

  == domain 15  score: 3.5 bits;  conditional E-value: 0.047
        Cnd1   42 aivvakL.ilndmvkekgflselaklleDenprVvanalaalteiseksenaiynllpdiisklsd...alnecsewgqitilefLlsyipkdk 131 
                  ++ ++ L  ++ ++ e g +  l +ll+ ++p  +++a  al ++++ +e++i       i +l++   +    ++++ + +l++L++ + ++k
  KOO23723.1 2755 LLQLSALgTNRSTIAEAGAIPPLVELLSSHSPDTQKSAAGALWNLASSAESKIQMRDAGAIPRLVHvlrCKSADTREHAVAVLSALARSQGQNK 2848
                  5556666777778888888888888888888888888888888888887777777777777777653323333444455555555555444444 PP

  == domain 16  score: 10.2 bits;  conditional E-value: 0.00041
        Cnd1   23 vepLrkrLkDedpyVRktaaivvakL......ilndmvkekgflselaklleDenprVvanalaalteiseksenaiynllpdiisk 103 
                  +epL + L D+ ++ +++aa ++  L      +  + + e g + +la++l+ ++ + +  a aal  i + ++  +  +++d ++ 
  KOO23723.1 2857 LEPLIALLDDQRSMTQRHAACCLWALsdgkdgVYDKAIAEGGAIPKLANMLNKDDLETRGFAAAALLCICRDETAHAAIMNSDGVHA 2943
                  799************************99999999999**************99999999999999999888654444444454444 PP

>> HEAT_2  HEAT repeats
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.0   1.9     0.049        67       4      65 ..      25      99 ..      22     105 .. 0.74
   2 ?    5.2   1.0      0.02        28      35      87 ..     109     170 ..      89     171 .. 0.66
   3 ?    4.8   2.1     0.027        38       4      56 ..     110     171 ..     107     213 .. 0.58
   4 ?   -0.8   7.4       1.5     2e+03      20      76 ..     209     284 ..     190     311 .. 0.56
   5 ?    1.7   0.5      0.24   3.4e+02       2      60 ..     273     341 ..     272     353 .. 0.76
   6 !    8.5   0.1    0.0019       2.6       4      88 .]     359     456 ..     356     497 .. 0.78
   7 !    9.9   2.5   0.00066      0.92       1      63 [.     515     589 ..     515     621 .. 0.74
   8 ?    2.1   2.5      0.18   2.5e+02       3      59 ..     601     668 ..     599     705 .. 0.78
   9 ?    1.5   1.8      0.28   3.8e+02      15      87 ..     658     741 ..     643     742 .. 0.68
  10 ?    2.3   0.7      0.16   2.2e+02      32      61 ..     718     747 ..     685     784 .. 0.62
  11 ?   -1.6   0.0       2.7   3.7e+03       3      26 ..     763     790 ..     761     812 .. 0.67
  12 ?    1.9   0.6      0.21   2.9e+02      30      59 ..     846     881 ..     817     923 .. 0.64
  13 ?    4.1   0.3     0.044        61      34      87 ..    1024    1087 ..     992    1102 .. 0.59
  14 ?    1.8   0.2      0.23   3.2e+02       2      61 ..    1292    1360 ..    1291    1384 .. 0.60
  15 !    7.3   0.8    0.0046       6.3       3      61 ..    1418    1485 ..    1416    1499 .. 0.67
  16 !   14.7   2.3   2.2e-05      0.03       2      87 ..    1458    1558 ..    1457    1559 .. 0.83
  17 !    7.7   0.3    0.0033       4.6      14      62 ..    1506    1565 ..    1493    1614 .. 0.79
  18 ?    5.4   4.8     0.017        23      20      86 ..    1682    1768 ..    1673    1773 .. 0.59
  19 !    6.6   4.5    0.0075        10       2      60 ..    1790    1861 ..    1789    1874 .. 0.83
  20 !    9.3   2.7     0.001       1.4       2      63 ..    1878    1944 ..    1877    1953 .. 0.79
  21 ?    6.0   0.1     0.011        15       1      60 [.    2017    2084 ..    2017    2128 .. 0.69
  22 !   13.9   1.1     4e-05     0.055      22      87 ..    2163    2240 ..    2142    2290 .. 0.76
  23 !    9.6   0.8   0.00087       1.2       1      59 [.    2351    2416 ..    2322    2449 .. 0.67
  24 ?    1.0   0.6      0.41   5.6e+02       6      55 ..    2533    2589 ..    2487    2589 .. 0.66
  25 ?    3.3   0.3     0.079   1.1e+02       7      59 ..    2534    2593 ..    2528    2605 .. 0.73
  26 !    9.9   0.5   0.00071      0.98       2      62 ..    2568    2638 ..    2567    2642 .. 0.74
  27 !    9.3   5.3     0.001       1.4       2      80 ..    2610    2702 ..    2609    2715 .. 0.81
  28 !   19.9   0.4   5.2e-07   0.00072      22      87 ..    2759    2837 ..    2736    2838 .. 0.78
  29 !   26.6   1.9   4.3e-09   5.9e-06       1      83 [.    2774    2876 ..    2774    2883 .. 0.79
  30 !   16.1   2.2   8.3e-06     0.011       2      85 ..    2816    2921 ..    2815    2924 .. 0.72

  Alignments for each domain:
  == domain 1  score: 4.0 bits;  conditional E-value: 0.049
      HEAT_2  4 LlqalendpdpevrraairaLgrignp............ealpaLvellededpavRraaaeaLg..aigdpealp 65
                L++++      evr +a+ +L +++++             a++ Lv+ll++  ++ ++ aa +Lg   +g  +a +
  KOO23723.1 25 LVAQI-ATGTAEVRDHAAAQLRSLATQnhgqhqpdilaaNAVAPLVKLLSSGTAHSQESAAATLGvlSLGKVDAQS 99
                66666.56777899999999996666666666677887788**********9999999999999844445444444 PP

  == domain 2  score: 5.2 bits;  conditional E-value: 0.02
      HEAT_2  35 aLvellededpavRraaaeaLgaig..........dpealpaLkellddddddvvReaAaeaL 87 
                  Lv ll+  +p v++ aa aL+a++             a+p+L ++l+  + +  ++ Aa+a+
  KOO23723.1 109 PLVTLLKMGSPKVQEVAASALAALDadishqhgiiKAGAIPHLIAILKGSSGAA-QAFAAQAI 170
                 688888888999999999999888644443333444668888888887654443.55566665 PP

  == domain 3  score: 4.8 bits;  conditional E-value: 0.027
      HEAT_2   4 LlqalendpdpevrraairaLg....rignp......ealpaLvellededpavRraaaeaLg 56 
                 L+ +l +  +p+v+  a+ aL+    +i ++       a+p L+ +l+ ++ a ++ aa+a++
  KOO23723.1 110 LVTLL-KMGSPKVQEVAASALAaldaDISHQhgiikaGAIPHLIAILKGSSGAAQAFAAQAIA 171
                 55555.566666666666666655553333355554466777777777777777777777665 PP

  == domain 4  score: -0.8 bits;  conditional E-value: 1.5
      HEAT_2  20 airaLg........rignpealpaLvellededpavRraaaeaLgaig...........dpealpaLkellddddd 76 
                 a+  L+        +i +   ++ L+ ll+  d++ +  aa+aL++++              a++ L++ll + + 
  KOO23723.1 209 ALAKLAhdnkevqaQITEAGGIAPLLALLNGIDMDAQVSAADALSEMAcdnaetqsaiaKAGAISPLLALLSSRSA 284
                 3333334443332233333448888888888888888888888876633222222222145577777777765443 PP

  == domain 5  score: 1.7 bits;  conditional E-value: 0.24
      HEAT_2   2 daLlqalendpdpevrraairaLg.....rignpea......lpaLvellededpavRraaaeaLgaigd 60 
                 ++Ll++l ++ + + + + + aL+     + +n+++      ++ +v lle+  ++v   aa aL ++ +
  KOO23723.1 273 SPLLALL-SSRSAAAQLKSLAALAqlmrgNRDNQDStaklggVKPIVGLLESNTAEVASCAACALMEFSR 341
                 6899999.8999999999999999665664455544445566********99999999999999998864 PP

  == domain 6  score: 8.5 bits;  conditional E-value: 0.0019
      HEAT_2   4 LlqalendpdpevrraairaLgrignp........ealpaLvellededpavRraaaeaLgaig....dpe..alpaLkellddddddvvReaAaeaLa 88 
                 L ++++ ++d++v+ +++ a+ ++ ++        ++l  Lv ll + +++ R ++  a++ +g    d++    ++L ell + + +  +e+A +aL+
  KOO23723.1 359 LRNLIKLSSDEKVKTEVAGAIWSLSEDteikksfaSSLSSLVALLGTGSARARTHVLGAISYLGldnqDNQvtLTQLLIELLINGSPQA-QERASKALG 456
                 66666667888888888888885444334444465789999999999999999999999999985433222335799999999888776.777888775 PP

  == domain 7  score: 9.9 bits;  conditional E-value: 0.00066
      HEAT_2   1 ldaLlqalendpdpevrraairaLg..rignpea.........lpaLvelled.edpavRraaaeaLgaigd.pea 63 
                 +++L+ +l +d+   ++ +a+ aL+   + n+e+         ++ L++ll+  ++p  R++ a+aL+ +++ p+a
  KOO23723.1 515 VPPLIHQL-SDARVLIKEQAAAALAklAFENKETcalitecggIKPLINLLQLkAHPKARQHGANALANLATnPDA 589
                 689*****.9***************443445544455555566********75389************99743554 PP

  == domain 8  score: 2.1 bits;  conditional E-value: 0.18
      HEAT_2   3 aLlqalendpdpevrraairaLg...........rignpealpaLvelleded.pavRraaaeaLgaig 59 
                 +L+ al +d+ +++++ ++raL+           +i++  a+  Lv lle +  p+ +++aa aL a++
  KOO23723.1 601 PLVLAL-DDEAQQTKKYVARALAslskgqqstqiTIAEAGAILPLVALLEGACgPEAQEEAAGALFALA 668
                 678889.9***************99887776666666668899******99887999999999996664 PP

  == domain 9  score: 1.5 bits;  conditional E-value: 0.28
      HEAT_2  15 evrraairaLgri.gnpea......lpaLvellededpavRraaaeaLgaig...dpe..alpaLkellddddddvvReaAaeaL 87 
                 e ++ a+ aL+++ gn+ a      + +Lv ll   + + R++a  aL+++    d++   ++ L ++l+d  +d  +e+Aa +L
  KOO23723.1 658 EEAAGALFALADYeGNRVAitgsggIGWLVMLLGINNQRARQHAEGALVRLSienDNRvlIINKLVDMLQDSGKDA-QEQAAASL 741
                 4556777888865344422444455999********************998543356633579****998765555.77778777 PP

  == domain 10  score: 2.3 bits;  conditional E-value: 0.16
      HEAT_2  32 alpaLvellededpavRraaaeaLgaigdp 61 
                 +++ Lv++l+d+  + +++aa +L+ ++++
  KOO23723.1 718 IINKLVDMLQDSGKDAQEQAAASLANLARE 747
                 367788888888888888888888776532 PP

  == domain 11  score: -1.6 bits;  conditional E-value: 2.7
      HEAT_2   3 aLlqalendpdpevrraairaLg.....r 26 
                 +Ll++l ++ + + + +a+ a+      +
  KOO23723.1 763 PLLEIL-DSTSNKAKENAVGAIKelcrnS 790
                 799999.8999999999999998533322 PP

  == domain 12  score: 1.9 bits;  conditional E-value: 0.21
      HEAT_2  30 p......ealpaLvellededpavRraaaeaLgaig 59 
                 +       a++ Lv +l++ ++  ++ aa aL+ ++
  KOO23723.1 846 QdaiseaGAIQPLVMMLTSYSSQMQASAAAALANLA 881
                 133332356778888888888888888888887664 PP

  == domain 13  score: 4.1 bits;  conditional E-value: 0.044
      HEAT_2   34 paLvellededpavRraaaeaL...........gaigdpealpaLkellddddddvvReaAaeaL 87  
                  p L+ +l+++ + +++aaa+a            + ++ ++a+paL++l++  ++++ +e A++aL
  KOO23723.1 1024 PPLITWLNSTMAITQAAAAHAVlclacdntntqAFLAKSDAIPALLALVTK-SSAEAQEYATRAL 1087
                  444444444444444444444433333333222233445555555554433.3333345554444 PP

  == domain 14  score: 1.8 bits;  conditional E-value: 0.23
      HEAT_2    2 daLlqalendpdpevrraairaLg.........r.ignpealpaLvellededpavRraaaeaLgaigdp 61  
                  +aLl+++ +  ++  + +a+ra+          + i +   +p Lv+ll+  +p+ +++a   ++ +++ 
  KOO23723.1 1292 PALLAFI-RTGSQLGQEHAARAIWhlaalfevhSiIIEAGGIPDLVQLLKMGSPRAQEMATAGISDLALG 1360
                  6777777.555555444444444422265544321233466******************99866544332 PP

  == domain 15  score: 7.3 bits;  conditional E-value: 0.0046
      HEAT_2    3 aLlqalendpdpevrraairaLg........rignp....ealpaLvellededpavRraaaeaLgaigdp 61  
                  +L+++l ++   + r +++ aL         r+         +  Lv +l+d  +  R++aa+aL++++++
  KOO23723.1 1418 PLVALL-SSGTAQARENTASALWhlaldgqiRL--AiakcGGISPLVAILDDGTEQARAHAANALARLATE 1485
                  566777.67777777777777774445553322..133335599999999999999999999999988753 PP

  == domain 16  score: 14.7 bits;  conditional E-value: 2.2e-05
      HEAT_2    2 daLlqalendpdpevrraairaLgrignp......ealpaLvellededpavRraaaeaLgai..gdpe.........alpaLkellddddddvvRe 81  
                  ++L+++l +d  ++ r++a+ aL+r++++      ++ + +v ll ++++ ++r aa+ ++ +  gdp          a++ L  ll     ++v+e
  KOO23723.1 1458 SPLVAIL-DDGTEQARAHAANALARLATEnedsqsQIAKNCVGLLGNKKTGTQRRAARVISDLasGDPGspvlivnagAISPLVNLLSGG-AADVKE 1552
                  6899***.****************9998888888899***********************9773344334445555559*****999665.666799 PP

      HEAT_2   82 aAaeaL 87  
                  ++a+aL
  KOO23723.1 1553 EVARAL 1558
                  999998 PP

  == domain 17  score: 7.7 bits;  conditional E-value: 0.0033
      HEAT_2   14 pevrraairaLgrignp...........ealpaLvellededpavRraaaeaLgaigdpe 62  
                  + ++r+a+r++ ++++             a+  Lv+ll+   ++v +++a+aL+ i++++
  KOO23723.1 1506 TGTQRRAARVISDLASGdpgspvlivnaGAISPLVNLLSGGAADVKEEVARALSTIALNS 1565
                  567889999999554332255566666688***********************9886433 PP

  == domain 18  score: 5.4 bits;  conditional E-value: 0.017
      HEAT_2   20 airaLgrignp........ealpaLvell.ededpavRraaaeaLgai......g......dpealpaLkellddddddvvReaAaea 86  
                  ++  L++i n+          +  Lv ll + ++ a  +aaa aL a+      +      d  a++ L +ll +ddd ++++a a a
  KOO23723.1 1682 VLADLAKISNKismqilieGGIGPLVVLLgKESSNAAKAAAAGALLALmsghqvDlqkavcDAGAIRPLVALLSEDDDIIRKRA-AGA 1768
                  4445554444444434443668899999955556677778888885443322221333444889*******9987766665555.444 PP

  == domain 19  score: 6.6 bits;  conditional E-value: 0.0075
      HEAT_2    2 daLlqalendpdpevrraairaLg...........rignpealpaLvelleded..pavRraaaeaLgaigd 60  
                  ++L+++l+++ ++ev ++a+ aL+           +++++  ++aL+++l++e    +   aaa aLga+++
  KOO23723.1 1790 AKLVSLLASSVHEEVSAEAAAALAilalnnkknqdKLASEGGIEALINILKSEGggDNAKGAAASALGALAS 1861
                  689999*99*****************9998777766677788********98866689**********9864 PP

  == domain 20  score: 9.3 bits;  conditional E-value: 0.001
      HEAT_2    2 daLlqalendpdpevrraairaLg.....rignpealp.aLvellededpavRraaaeaLgaigdpea 63  
                  ++L+++l   +++e r +a+ aL+     + +n+ea++  Lv+ll +ed      aa a +++++ +a
  KOO23723.1 1878 APLVAVL-GLSSHEAREQAATALAalaldNTKNEEAIAlFLVSLLGSEDKQASTKAALAVSRFARASA 1944
                  6788888.7788888888888888887986677777551577788****************9987655 PP

  == domain 21  score: 6.0 bits;  conditional E-value: 0.011
      HEAT_2    1 ldaLlqalendpdpevrr.aairaLg.......rignpea.....lpaLvellededpavRraaaeaLgaigd 60  
                  l++L++ l  +++ ++    a++aL        +     +     +p Lv ll++ +   +++aa aL a+++
  KOO23723.1 2017 LEPLIAMLDGHAEVQTDVaGALWALSddehnreT-----VgklhgIPPLVALLKTGSHSAQETAAGALHALAE 2084
                  5789999966666665533677777765333322.....244455********88888888888877766643 PP

  == domain 22  score: 13.9 bits;  conditional E-value: 4e-05
      HEAT_2   22 raLg.......rignpealpaLvellededpavRraaaeaLgaigdpe......alpaLkellddddddvvReaAaeaL 87  
                  r+L+        i+   a+p Lv+ le+ ++    +aa+aL+ i++++      a + L +ll +d+++v+++ A eaL
  KOO23723.1 2163 RNLAsvpenrsAIAKAGAVPELVRQLESGSEKSMGMAAQALALIALDSdksralATQELVKLLGSDNVAVRKR-ASEAL 2240
                  5555444443345555778888888888888888888888887753222234457888888888888887554.57766 PP

  == domain 23  score: 9.6 bits;  conditional E-value: 0.00087
      HEAT_2    1 ldaLlqalendpdpevrraairaLgrignp........ealpaLvellededpavRraaaeaLgaig 59  
                  +++L+ +l +  + e + +a+ +L++++           a+pa+v++l +++    + aa+aL++i+
  KOO23723.1 2351 IEPLVTLL-TNGNAEAKEHAANCLAQLARHagasldiaAAVPAFVKWLANPNLGPPEVAARALSEIA 2416
                  46777777.7788888888888888654443555555567888888888888666666666666554 PP

  == domain 24  score: 1.0 bits;  conditional E-value: 0.41
      HEAT_2    6 qalendpdpevrraairaLg.......rignpealpaLvellededpavRraaaeaL 55  
                   a++++  +e   +a++ L+        i+    ++ Lv ll +e++ ++r aa aL
  KOO23723.1 2533 TAVHRHDTYEQPCKALWHLAateenqtAIAKAGGIAPLVALLVSEHSTTQRFAAAAL 2589
                  444455555555666666775444433333444478888888777776666666665 PP

  == domain 25  score: 3.3 bits;  conditional E-value: 0.079
      HEAT_2    7 alendpdpevrraairaLg.......rignpealpaLvellededpavRraaaeaLgaig 59  
                  a++++  +e   +a++ L+        i+    ++ Lv ll +e++ ++r aa aL  ++
  KOO23723.1 2534 AVHRHDTYEQPCKALWHLAateenqtAIAKAGGIAPLVALLVSEHSTTQRFAAAALQSLA 2593
                  55666666777788888886655543344455699******9999999999999997665 PP

  == domain 26  score: 9.9 bits;  conditional E-value: 0.00071
      HEAT_2    2 daLlqalendpdpevrraairaLg........rignp......ealpaLvellededpavRraaaeaLgaigdpe 62  
                  ++L+++l  +++  ++r a+ aL         +   +       a++ Lv++l +e++ ++ +a+ aL  +++++
  KOO23723.1 2568 APLVALL-VSEHSTTQRFAAAALQslardhieN---QiaiskaGAIAPLVDILGSENEGTQVHAVGALLSLASHD 2638
                  6899999.5777788877777777444653330...366666678**********************98777665 PP

  == domain 27  score: 9.3 bits;  conditional E-value: 0.001
      HEAT_2    2 daLlqalendpdpevrraairaLgrignp......ealpaLvellededpavRraaaeaLg...........aigdpealpaLkellddddddvvR 80  
                  ++L+ +l  ++++ ++ +a+ aL ++++        +++ Lv++l+  ++  +++aaeaL+           ai d +a++ L +ll d   ++vR
  KOO23723.1 2610 APLVDIL-GSENEGTQVHAVGALLSLASHdvssrnAVVKRLVPVLDLRSATAQMNAAEALAllaarsdenrkAITDADAVEPLVRLLGD--GRRVR 2702
                  7899999.9*************998877734444456***********************966555555555667999*******9975..45566 PP

  == domain 28  score: 19.9 bits;  conditional E-value: 5.2e-07
      HEAT_2   22 raLg....rignpealpaLvellededpavRraaaeaL........g..aigdpealpaLkellddddddvvReaAaeaL 87  
                   aLg    +i++  a+p Lvell++++p++++ aa aL        +  +++d  a+p L + l+  +++++Re A+  L
  KOO23723.1 2759 SALGtnrsTIAEAGAIPPLVELLSSHSPDTQKSAAGALwnlassaeSkiQMRDAGAIPRLVHVLR-CKSADTREHAVAVL 2837
                  46666666778889999999999999999999999999666555442334468889999999886.66677788888766 PP

  == domain 29  score: 26.6 bits;  conditional E-value: 4.3e-09
      HEAT_2    1 ldaLlqalendpdpevrraairaLg..........rignpealpaLvellededpavRraaaeaLgaig...........dpealpaLkellddddd 76  
                  +++L+++l ++ +p++++ a+ aL           ++++  a+p Lv +l+++++++R++a+  L+a++           d +al+ L +lldd ++
  KOO23723.1 2774 IPPLVELL-SSHSPDTQKSAAGALWnlassaeskiQMRDAGAIPRLVHVLRCKSADTREHAVAVLSALArsqgqnkkliyDAAALEPLIALLDDQRS 2869
                  689*****.888899999988888877788888888888899***********************998533344455555788*******9987665 PP

      HEAT_2   77 dvvReaA 83  
                     R aA
  KOO23723.1 2870 MTQRHAA 2876
                  4444443 PP

  == domain 30  score: 16.1 bits;  conditional E-value: 8.3e-06
      HEAT_2    2 daLlqalendpdpevrraairaLg....rignp..........ealpaLvellededpavRraaa...eaLg.........aigdpealpaLkelld 72  
                  + L+ +l ++++ ++r +a+ +L     +   +           al+ L+ ll+d+ ++++r+aa   +aL+         ai++  a+p L+ +l+
  KOO23723.1 2816 PRLVHVL-RCKSADTREHAVAVLSalarS---QgqnkkliydaAALEPLIALLDDQRSMTQRHAAcclWALSdgkdgvydkAIAEGGAIPKLANMLN 2908
                  7799999.9***********999965540...2445566666689***********9999999993444553444444554666777*******998 PP

      HEAT_2   73 dddddvvReaAae 85  
                   dd + +  aAa 
  KOO23723.1 2909 KDDLETRGFAAAA 2921
                  8776665555444 PP

>> Adaptin_N  Adaptin N terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.0   0.4    0.0026       3.6     157     313 ..     233     441 ..     203     470 .. 0.58
   2 !    5.9   0.3    0.0028       3.8     335     413 ..     713     795 ..     705     807 .. 0.77
   3 ?    1.2   0.0     0.076     1e+02     354     409 ..    1469    1524 ..    1459    1533 .. 0.78
   4 ?    3.7   0.0     0.013        18     382     431 ..    1539    1590 ..    1531    1622 .. 0.64
   5 !    7.1   0.1    0.0013       1.8     119     415 ..    1750    1826 ..    1742    1860 .. 0.59
   6 ?    2.0   0.0     0.042        58     352     416 ..    1887    1951 ..    1878    1972 .. 0.86
   7 ?    2.5   0.0     0.031        42     451     520 ..    2157    2243 ..    2118    2247 .. 0.81
   8 ?    2.2   0.1     0.038        53     455     520 ..    2161    2243 ..    2155    2387 .. 0.64
   9 ?    4.0   0.0     0.011        15     158     276 ..    2571    2695 ..    2547    2705 .. 0.55
  10 !    6.7   0.0    0.0017       2.3     116     219 ..    2857    2968 ..    2745    2997 .. 0.63

  Alignments for each domain:
  == domain 1  score: 6.0 bits;  conditional E-value: 0.0026
                 HHHCTT-SSHHHHHHHHHHHHHHHCCCCCCC..HHHHHHHCCHHHHHHCS-HHHHHHHHHHHCC---SSHHHH.......................... CS
   Adaptin_N 157 ikellsdkdpgvvlaAvalleeikkndrlll..kllpklvrrLcnllteldpwlqvkiiklltrlarqepeer.......................... 227
                 +  ll+  d+  +++A  +l e+ + + ++    +    ++ L  ll++ +  +q+k +  l +l+r + + +                          
  KOO23723.1 233 LLALLNGIDMDAQVSAADALSEMACDNAETQsaIAKAGAISPLLALLSSRSAAAQLKSLAALAQLMRGNRDNQdstaklggvkpivgllesntaevasc 331
                 555556666666666666666664444443322222334555555666666666666666666666655555555666666666666666666666666 PP

                 ......................HHHHHHHCGGCG.CSSCHHHHHHHHHCCHCCCCST...HHHCCHHCHHHHHHSSCCTCHHHHHCHHHHHHHHX.XTT CS
   Adaptin_N 228 ....................skkellesllnllq.ssnnaVlletvnlivelapkne...livlavnaLvrllsskdenlryvaLrtllkivkke.pka 301
                                     +    + +l nl++ ss + V  e++ +i +l++++e   +     + Lv ll +     r  +L +++ +   +  + 
  KOO23723.1 332 aacalmefsranpaiqqtivD-LGGISQLRNLIKlSSDEKVKTEVAGAIWSLSEDTEikkSFASSLSSLVALLGTGSARARTHVLGAISYLGLDNqDNQ 429
                 666666655555554443321.34567777777788888888888888888888888555445555666666665555577777777766655544556 PP

                 TTTTTCCCCSXX CS
   Adaptin_N 302 vqhldlkifllk 313
                 v+  +l i+ll+
  KOO23723.1 430 VTLTQLLIELLI 441
                 666666666655 PP

  == domain 2  score: 5.9 bits;  conditional E-value: 0.0028
                 TTHHHHHHHHHHHTTSSXXHHHHHHHHHHHHHHHHHSCCHHHHHHHH.....HHHHHTTXXHHHHHHHHHHHHHHHHHSTTTST CS
   Adaptin_N 335 sNvkeivkeLkkyvkevadedfksklvkaIgrlaekfatdaewvldv.....llellslsgesvkdeivevirdliqkvpelhe 413
                 +N   i+++L   ++++  +d  ++++ ++++la  ++++ ++++d      lle+l ++++++k+ +v +i++l ++ ++++ 
  KOO23723.1 713 DNRVLIINKLVDMLQDS-GKDAQEQAAASLANLARESEENRKSIVDAngivpLLEILDSTSNKAKENAVGAIKELCRNSKNNQT 795
                 56667888888888555.777888999999999999988888888754444477777778888899999999999999888854 PP

  == domain 3  score: 1.2 bits;  conditional E-value: 0.076
                  HHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHTTXXHHHHHHHHHHHHHHHHHST CS
   Adaptin_N  354 edfksklvkaIgrlaekfatdaewvldvllellslsgesvkdeivevirdliqkvp 409 
                  e+ ++ +++a++rla+  +++++++ +  + ll ++ +++++ ++ vi dl +  p
  KOO23723.1 1469 EQARAHAANALARLATENEDSQSQIAKNCVGLLGNKKTGTQRRAARVISDLASGDP 1524
                  45788888888888888888888888888888888888888888888888877666 PP

  == domain 4  score: 3.7 bits;  conditional E-value: 0.013
                  HHHHHTTXXHHHHHHHHHHHHHHHHHSTTTSTTCHHHHCCTCCG..XXSHHH CS
   Adaptin_N  382 llellslsgesvkdeivevirdliqkvpelheeiiekLaellek..ieseea 431 
                  l++lls     vk+e++ ++  +  + p+ +  i++ L+ell +   es+e 
  KOO23723.1 1539 LVNLLSGGAADVKEEVARALSTIALNSPSTQLAIASGLVELLGTgtAESQEH 1590
                  6666666666666666666666666666666666666666665554444433 PP

  == domain 5  score: 7.1 bits;  conditional E-value: 0.0013
                  HHHHHT-SSHHHHHHHHHHHHHCCCC...CHHCCCCC.HHHHHHHCT.T-SSHHHHHHHHHHHHHH....HCCCCCCCHHHHHHHCCHHHHHHCS-H CS
   Adaptin_N  119 ikkllkdrspyvrkkAalailklykk...dpdllrkq.lveeikell.sdkdpgvvlaAvalleei....kkndrlllkllpklvrrLcnllteldp 206 
                  + +ll+ ++  +rk Aa ai++l      ++d + k   + ++++ll s+ +  v + A a+l  +    k                          
  KOO23723.1 1750 LVALLSEDDDIIRKRAAGAIAALCVGsaeNQDTVVKSkCIAKLVSLLaSSVHEEVSAEAAAALAILalnnK-------------------------- 1820
                  55566666666666666666666644333555555665666666666333334555555555554444543.......................... PP

                  HHHHHHHHHHCC---SSHHHH..HHHHHHHCGGCGCSSCHHHHHHHHHCCHCCCCSTHHHCCHHCHHHHHHSSCCTCHHHHHCHHHHHHHHXXTTTT CS
   Adaptin_N  207 wlqvkiiklltrlarqepeerskkellesllnllqssnnaVlletvnlivelapknelivlavnaLvrllsskdenlryvaLrtllkivkkepkavq 303 
                                                                                                                   
  KOO23723.1    - -------------------------------------------------------------------------------------------------    -
                  ................................................................................................. PP

                  TTTCCCCSXXTTSXHHHHHHHHHHHCCCXXTTTHHHHHHHHHHHTTSSXXHHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHTTXXHHHHHHHHHH CS
   Adaptin_N  304 hldlkifllktdddvsirlkaldlllklvdesNvkeivkeLkkyvkevadedfksklvkaIgrlaekfatdaewvldvllellslsgesvkdeivev 400 
                                                                                                                   
  KOO23723.1    - -------------------------------------------------------------------------------------------------    -
                  ................................................................................................. PP

                  HHHHHHHSTTTSTTC CS
   Adaptin_N  401 irdliqkvpelheei 415 
                           +++++ 
  KOO23723.1 1821 ---------KNQDKL 1826
                  .........333332 PP

  == domain 6  score: 2.0 bits;  conditional E-value: 0.042
                  XXHHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHTTXXHHHHHHHHHHHHHHHHHSTTTSTTCH CS
   Adaptin_N  352 adedfksklvkaIgrlaekfatdaewvldvllellslsgesvkdeivevirdliqkvpelheeii 416 
                  + ++ ++++++a++ la   ++++e +  +l+ ll ++++ ++ +++ ++ +  +  +++++ i+
  KOO23723.1 1887 SSHEAREQAATALAALALDNTKNEEAIALFLVSLLGSEDKQASTKAALAVSRFARASASNQRTIA 1951
                  5677899***********************************99999999999888888877664 PP

  == domain 7  score: 2.5 bits;  conditional E-value: 0.031
                  .HHHHHHCTTTTTTTSXHHHHHHHHHHHHHHHHCXGCC.THX.................HHHHHHHHHHHXXSHHHHHHHHHHHHHH CS
   Adaptin_N  451 sasdllrslaekfvlesekvklqiltalvKlyltspdketqe.................kliqlvlslatssdlevrdRaveylqll 520 
                   +++llr la+++ + s+++k+ ++ +lv+  +  ++k+ +                  + +q + +l+ s+++ vr+Ra e l+++
  KOO23723.1 2157 HVAQLLRNLASVPENRSAIAKAGAVPELVRQLESGSEKSMGMaaqalalialdsdksraLATQELVKLLGSDNVAVRKRASEALTCM 2243
                  678899999999999999999999999999997777666655777777777777777778889999999988999999999999887 PP

  == domain 8  score: 2.2 bits;  conditional E-value: 0.038
                  HHHCTTTTTTTSXHHHHHHHHHHHHHHHHCXGCC.THX.................HHHHHHHHHHHXXSHHHHHHHHHHHHHH CS
   Adaptin_N  455 llrslaekfvlesekvklqiltalvKlyltspdketqe.................kliqlvlslatssdlevrdRaveylqll 520 
                  llr la+++ + s+++k+ ++ +lv+  +  ++k+ +                  + +q + +l+ s+++ vr+Ra e l+++
  KOO23723.1 2161 LLRNLASVPENRSAIAKAGAVPELVRQLESGSEKSMGMaaqalalialdsdksraLATQELVKLLGSDNVAVRKRASEALTCM 2243
                  55555555555555555555555555554444433333444444444444444445555555555555666666666655554 PP

  == domain 9  score: 4.0 bits;  conditional E-value: 0.011
                  HHCTT-SSHHHHHHHHHHHHHH..HCCCCCCCHHHHHHHCCHHHHHHCS-HHHHHHHHHHHCC---SSHHHH..HHHHHHHCGGCGCSSCHHHHHHH CS
   Adaptin_N  158 kellsdkdpgvvlaAvalleei..kkndrlllkllpklvrrLcnllteldpwlqvkiiklltrlarqepeerskkellesllnllqssnnaVlletv 252 
                  + ll +++   ++ A a+l+++  ++ ++  +      +  L ++l++ ++  qv  +  l +la ++ ++r  + ++++l + l  ++++  ++++
  KOO23723.1 2571 VALLVSEHSTTQRFAAAALQSLarDHIENQIAISKAGAIAPLVDILGSENEGTQVHAVGALLSLASHDVSSR--NAVVKRLVPVLDLRSATAQMNAA 2665
                  455555555555555555666533222222111112233444445556666666666666666666666666..55666666666666666666666 PP

                  HHCCHCCCCST......HHHCCHHCHHHHH CS
   Adaptin_N  253 nlivelapkne......livlavnaLvrll 276 
                  +++  la +++      +   av+ Lvrll
  KOO23723.1 2666 EALALLAARSDenrkaiTDADAVEPLVRLL 2695
                  666655555444444443334555555555 PP

  == domain 10  score: 6.7 bits;  conditional E-value: 0.0017
                  HHHHHHHHT-SSHHHHHHHHHHHHHCCCC....CHHCCCCC.HHHHHHHCTT-SSHHHHHHHHHHHHHHHCCCCCCC..HHHHHHHCCHHHHH..HC CS
   Adaptin_N  116 apaikkllkdrspyvrkkAalailklykk....dpdllrkq.lveeikellsdkdpgvvlaAvalleeikkndrlll..kllpklvrrLcnll..te 203 
                  ++ + +ll d++++ ++ Aa+++ +l +     + +++ +   ++++ + l+ +d    + A a+l  i + d+ +    + ++ v+ L  l    +
  KOO23723.1 2857 LEPLIALLDDQRSMTQRHAACCLWALSDGkdgvYDKAIAEGgAIPKLANMLNKDDLETRGFAAAALLCI-CRDETAHaaIMNSDGVHALVALAygLT 2952
                  445566677777777777777777776655555455555555677777777666655555555444444.333333333333333333333324456 PP

                  S-HHHHHHHHHHHCC- CS
   Adaptin_N  204 ldpwlqvkiiklltrl 219 
                     wl++ +i++lt l
  KOO23723.1 2953 AGTWLHTQVIEMLTLL 2968
                  6677777777777665 PP

>> Arm_2  Armadillo-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.0       1.2   1.6e+03       7      83 ..      58     134 ..      54     144 .. 0.67
   2 ?    4.3   0.0     0.017        24      11     156 ..     145     292 ..     135     311 .. 0.63
   3 !   12.6   0.2     5e-05     0.069      17     190 ..     317     488 ..     312     505 .. 0.86
   4 ?    5.0   0.0      0.01        14      47     170 ..     506     633 ..     496     648 .. 0.74
   5 ?   -0.8   0.0      0.59   8.2e+02      17      87 ..     644     714 ..     634     719 .. 0.89
   6 !    9.7   1.0   0.00039      0.54      15      91 ..     720     796 ..     715     807 .. 0.80
   7 ?    2.0   0.3     0.088   1.2e+02      44      89 ..     843     888 ..     836     897 .. 0.87
   8 ?   -0.2   0.0      0.41   5.7e+02      21      89 ..     904     974 ..     891    1079 .. 0.74
   9 ?   -2.7   0.0       2.3   3.2e+03      18      78 ..    1027    1087 ..    1014    1100 .. 0.74
  10 ?    1.7   0.0       0.1   1.4e+02      50     169 ..    1451    1569 ..    1448    1575 .. 0.69
  11 ?    0.4   0.0      0.26   3.5e+02     138     177 ..    1575    1614 ..    1568    1620 .. 0.89
  12 ?   -1.0   0.0      0.71   9.8e+02      47     106 ..    1738    1795 ..    1707    1803 .. 0.69
  13 ?    1.3   0.4      0.14     2e+02       4      66 ..    1779    1842 ..    1776    1873 .. 0.74
  14 ?    1.7   0.1      0.11   1.5e+02      40      91 ..    1861    1913 ..    1819    1922 .. 0.71
  15 ?   -0.7   0.0      0.59   8.1e+02      17      67 ..    1917    1967 ..    1904    1971 .. 0.74
  16 ?    0.7   0.0      0.21   2.9e+02      46     175 ..    2047    2179 ..    2006    2206 .. 0.71
  17 ?   -2.3   0.0       1.8   2.5e+03      94     157 ..    2307    2372 ..    2268    2388 .. 0.58
  18 ?   -2.7   0.1       2.3   3.2e+03      17      78 ..    2570    2631 ..    2551    2672 .. 0.58
  19 ?    3.9   0.0     0.023        31      33      91 ..    2751    2809 ..    2735    2819 .. 0.83
  20 ?   -2.2   0.0       1.7   2.3e+03     136     187 ..    2815    2867 ..    2811    2870 .. 0.80

  Alignments for each domain:
  == domain 1  score: -1.7 bits;  conditional E-value: 1.2
       Arm_2   7 evLepkelekllalLkssedpliqeialltlgnsaaysv.nqdiirdlggitiianllsksnaevkekalnalnnlse 83 
                 ++L ++  + l++lL s      qe a  tlg+     v +q  +   ggi+ +  ll   +++v+e a +al +l  
  KOO23723.1  58 DILAANAVAPLVKLLSS-GTAHSQESAAATLGVLSLGKVdAQSAVVAAGGIVPLVTLLKMGSPKVQEVAASALAALDA 134
                 56778888888888865.445667777778877665554356666667777666678888888888777777666554 PP

  == domain 2  score: 4.3 bits;  conditional E-value: 0.017
       Arm_2  11 pkelekllalLkssedpliqeialltlgnsaaysvn.qdiirdlggitiianllsksnaevk.ekalnalnnlsenvenqkkikvyvnqvckdivsspl 107
                 +  + +l+a+Lk s+  + q  a  +++n+aa+s+  q  i + g i+++ +ll   +a++    al  l    + v+ q      +  ++       +
  KOO23723.1 145 AGAIPHLIAILKGSSGAA-QAFAAQAIANAAAFSCEvQRSICNAGSIPLLLSLLGAGKAQKPaASALAKLAHDNKEVQAQITEAGGIAPLLALLNG--I 240
                 556678999999988765.66777799*******965889**************988777654788888885555555554444444444443333..3 PP

       Arm_2 108 NsevQlagLklltnlsvtn.eyqhllvs..yisellsLLskGnekikvqvLk 156
                   + Q+++   l +++  n e q  +++   is ll LLs+ +   +++ L 
  KOO23723.1 241 DMDAQVSAADALSEMACDNaETQSAIAKagAISPLLALLSSRSAAAQLKSLA 292
                 3344555555666666655233444433224666666666666655555555 PP

  == domain 3  score: 12.6 bits;  conditional E-value: 5e-05
       Arm_2  17 llalLkssedpliqeialltlgnsaaysvnqdiirdlggitiianlls.ksnaevkekalnalnnlsenvenqkkikvyvnqvckdivssplNsevQla 114
                 ++ lL+s +  + + +a   +  s a ++ q++i dlggi  + nl+  +s+++vk     a+  lse +e +k+  + ++ ++    + +  +     
  KOO23723.1 317 IVGLLESNTAEVASCAACALMEFSRANPAIQQTIVDLGGISQLRNLIKlSSDEKVKTEVAGAIWSLSEDTEIKKSFASSLSSLVALLGTGSARART--H 413
                 67889999999999999999999************************934567888899999***********99999999999988888766555..5 PP

       Arm_2 115 gLklltnlsvtneyqhllvsyisellsLLskGnekikvqvLkvllnls.eNpamtrellsakvlssllslfnkkeak 190
                  L  +  l   n+++ +  +  + l++LL +G+ + +    k l  l  eNp + + + +a  + +l+ l +++ + 
  KOO23723.1 414 VLGAISYLGLDNQDNQVTLT--QLLIELLINGSPQAQERASKALGTLVhENPSAHEVIAKAGDPTALVTLLKSNNSE 488
                 5778999*****99998776..569*******************9985389999999999999*****999888765 PP

  == domain 4  score: 5.0 bits;  conditional E-value: 0.01
       Arm_2  47 qdiirdlggitiianllsksnaevkekalnalnnlsenvenqkkikvyvnqvckdivssplNs..evQlagLklltnlsvtney.qhllvsy.isells 141
                 q ii   gg++ + + ls+    +ke+a  al +l+  +++   + +    +   i + +l +  +  + g   l nl+++ +  + ++ s+ i+ l+ 
  KOO23723.1 506 QSIISMAGGVPPLIHQLSDARVLIKEQAAAALAKLAFENKETCALITECGGIKPLINLLQLKAhpKARQHGANALANLATNPDAcHEIVSSSgIRPLVL 604
                 788888999988888999999999999999999888655555555455555555555555554225778889999999888665155655445899999 PP

       Arm_2 142 LLskGnekikvqvLkvllnlseNpamtre 170
                  L    +++k +v + l  ls+ ++ t+ 
  KOO23723.1 605 ALDDEAQQTKKYVARALASLSKGQQSTQI 633
                 99999999999999999999999888874 PP

  == domain 5  score: -0.8 bits;  conditional E-value: 0.59
       Arm_2  17 llalLkssedpliqeialltlgnsaaysvnqdiirdlggitiianllsksnaevkekalnalnnlsenven 87 
                 l+alL+ +  p  qe a  +l   a y  n+  i   ggi+ +  ll  +n++ +++a  al  ls  ++n
  KOO23723.1 644 LVALLEGACGPEAQEEAAGALFALADYEGNRVAITGSGGIGWLVMLLGINNQRARQHAEGALVRLSIENDN 714
                 899****************************************9999999999999998888888877666 PP

  == domain 6  score: 9.7 bits;  conditional E-value: 0.00039
       Arm_2  15 ekllalLkssedpliqeialltlgnsa.aysvnqdiirdlggitiianllsksnaevkekalnalnnlsenvenqkki 91 
                 +kl+++L+ s + + +++a   l+n a     n++ i d  gi+ + ++l +++++ ke+a+ a+ +l  n++n++ i
  KOO23723.1 720 NKLVDMLQDSGKDAQEQAA-ASLANLArESEENRKSIVDANGIVPLLEILDSTSNKAKENAVGAIKELCRNSKNNQTI 796
                 79******99887655544.455555514456787777777777777899999*******************998876 PP

  == domain 7  score: 2.0 bits;  conditional E-value: 0.088
       Arm_2  44 svnqdiirdlggitiianllsksnaevkekalnalnnlsenvenqk 89 
                 + nqd i + g i  +  +l + + +++  a  al nl++n+ +++
  KOO23723.1 843 PKNQDAISEAGAIQPLVMMLTSYSSQMQASAAAALANLAQNHIENQ 888
                 679**********99999999999**************99974433 PP

  == domain 8  score: -0.2 bits;  conditional E-value: 0.41
       Arm_2  21 Lkssedpliqeialltlgnsaaysvnqdiirdlggitiianllsksnaevk....ekalnalnnlsenvenqk 89 
                 ++  ++ +  e a  +l+ +  +  n+d+i ++gg+  +  ll + +  ++      +l al   s+ v+n +
  KOO23723.1 904 MREGSEAAKDECAAAILALATDHQGNKDVIVKVGGLDQLLGLLVTGKTDKSqecvAGTLAALA--SKHVDNRQ 974
                 556667777888899999999999999999999998766555543333322001134444444..55555544 PP

  == domain 9  score: -2.7 bits;  conditional E-value: 2.3
       Arm_2   18 lalLkssedpliqeialltlgnsaaysvnqdiirdlggitiianllsksnaevkekalnal 78  
                  ++ L+s+   +   +a  +l+ +   + +q+++ + + i+ + +l+ ks+ae +e a  al
  KOO23723.1 1027 ITWLNSTMAITQAAAAHAVLCLACDNTNTQAFLAKSDAIPALLALVTKSSAEAQEYATRAL 1087
                  5555566555566667778888888888889999999999999999888888887776666 PP

  == domain 10  score: 1.7 bits;  conditional E-value: 0.1
       Arm_2   50 irdlggitiianllsksnaevkekalnalnnlsenvenqkkikvyvnqvckdivssplNsevQlagLklltnlsvtneyqhllv.s..yisellsLL 143 
                  i + ggi  + ++l +  ++ + +a nal  l++ +e     ++ + + c   +  +  +  Q  + +++ +l+  +    +l+ +   is l++LL
  KOO23723.1 1451 IAKCGGISPLVAILDDGTEQARAHAANALARLATENE---DSQSQIAKNCVGLL-GNKKTGTQRRAARVISDLASGDPGSPVLIvNagAISPLVNLL 1543
                  5566777777777777777777777777775544333...33455666666654.4446667777777777777777665554312226999***** PP

       Arm_2  144 skGnekikvqvLkvllnlseNpamtr 169 
                  s G   +k +v + l+ ++ N   t+
  KOO23723.1 1544 SGGAADVKEEVARALSTIALNSPSTQ 1569
                  ****************9999987765 PP

  == domain 11  score: 0.4 bits;  conditional E-value: 0.26
       Arm_2  138 ellsLLskGnekikvqvLkvllnlseNpamtrellsakvl 177 
                   l++LL +G  + + +v ++ll l++  ++   +++a + 
  KOO23723.1 1575 GLVELLGTGTAESQEHVSQLLLTLAKDAENCVSIVRAGAV 1614
                  5899***************************999999765 PP

  == domain 12  score: -1.0 bits;  conditional E-value: 0.71
       Arm_2   47 qdiirdlggitiianllsksnaevkekalnalnnlsenvenqkkikvyvnqvckdivssp 106 
                  q+ + d g i  + +lls+ +  ++++a  a+ +l +++ +++ +   v+  c + ++s 
  KOO23723.1 1738 QKAVCDAGAIRPLVALLSEDDDIIRKRAAGAIAALCVGSAENQDT--VVKSKCIAKLVSL 1795
                  667788888888889999999999999999999998875444332..3333444444444 PP

  == domain 13  score: 1.3 bits;  conditional E-value: 0.14
       Arm_2    4 kldevLepkelekllalLkssedpliqeialltlgnsa.aysvnqdiirdlggitiianllsks 66  
                  ++d+v ++k ++kl++lL ss    ++  a  +l++ a +   nqd + + ggi  + n+l ++
  KOO23723.1 1779 NQDTVVKSKCIAKLVSLLASSVHEEVSAEAAAALAILAlNNKKNQDKLASEGGIEALINILKSE 1842
                  5688899999***********9999999999999987735678999999999999888888654 PP

  == domain 14  score: 1.7 bits;  conditional E-value: 0.11
       Arm_2   40 saaysvnqdiirdlggitiianllsksnaevkekalnalnnls.envenqkki 91  
                  s  +  nq+ i + ggi+ + ++l  s++e +e+a +al +l+ +n++n++ i
  KOO23723.1 1861 SGKHYENQAAIANAGGIAPLVAVLGLSSHEAREQAATALAALAlDNTKNEEAI 1913
                  3346679999*****99999999************999999873466666655 PP

  == domain 15  score: -0.7 bits;  conditional E-value: 0.59
       Arm_2   17 llalLkssedpliqeialltlg.nsaaysvnqdiirdlggitiianllsksn 67  
                  l++lL  sed   + +a l+++  + a + nq +i + ggi ++ +ll  + 
  KOO23723.1 1917 LVSLLG-SEDKQASTKAALAVSrFARASASNQRTIAKAGGIELLVSLLDVPG 1967
                  455555.55555566666666615778999************9999987665 PP

  == domain 16  score: 0.7 bits;  conditional E-value: 0.21
       Arm_2   46 nqdiirdlggitiianllsksnaevkekalnalnnlsenvenqkkikvy.......vnqvckdivssplNsevQlagLklltnlsvtneyqhllvsy 135 
                  n++++ +l gi+ + +ll + +++ +e a  al +l+e +en   i          ++ +++     ++ s  Q ag   l+ l v+n  + + +  
  KOO23723.1 2047 NRETVGKLHGIPPLVALLKTGSHSAQETAAGALHALAETAENRITIANGhstigggIPLLVSLFDGGSVDSCEQAAG--ALIALCVQNVTNQIATA- 2140
                  88999999999988888888888888777777777777777766554320111111333444444456677777666..36667777777666544. PP

       Arm_2  136 isellsLLskGnekikvqvLkvllnlseNpamtrellsak 175 
                   +e + +L++G+     +v ++l nl++ p++   + +a 
  KOO23723.1 2141 -KEAVGMLKRGSSGAAEHVAQLLRNLASVPENRSAIAKAG 2179
                  .566677777777777777777777777777766666655 PP

  == domain 17  score: -2.3 bits;  conditional E-value: 1.8
       Arm_2   94 yvnqvckdivssplNsevQlagLklltnls.vtneyqhl.lvsyisellsLLskGnekikvqvLkv 157 
                  ++  +++   + +l +  Q  +  +l  l+ + ++ + + l++ i+ l++LL++Gn + k +    
  KOO23723.1 2307 CIVTLIESLRLGKLSAVAQEHAAAVLSGLApIGENAKSIeLAKGIEPLVTLLTNGNAEAKEHAANC 2372
                  555555555555555555555555555554333333333366778888888888888877655555 PP

  == domain 18  score: -2.7 bits;  conditional E-value: 2.3
       Arm_2   17 llalLkssedpliqeialltl.gnsaaysvnqdiirdlggitiianllsksnaevkekalnal 78  
                  l+alL  se ++ q+ a  +l + +  +  nq  i + g i+ + ++l ++n+  +++a+ al
  KOO23723.1 2570 LVALLV-SEHSTTQRFAAAALqSLARDHIENQIAISKAGAIAPLVDILGSENEGTQVHAVGAL 2631
                  444443.33333344333333133445555566666666666666666666666666665555 PP

  == domain 19  score: 3.9 bits;  conditional E-value: 0.023
       Arm_2   33 alltlgnsaaysvnqdiirdlggitiianllsksnaevkekalnalnnlsenvenqkki 91  
                  a  +l    a   n+ +i + g i+ + +lls+ ++  ++ a  al nl++++e + ++
  KOO23723.1 2751 ASGALLQLSALGTNRSTIAEAGAIPPLVELLSSHSPDTQKSAAGALWNLASSAESKIQM 2809
                  5556666678889************************************9999988776 PP

  == domain 20  score: -2.2 bits;  conditional E-value: 1.7
       Arm_2  136 isellsLLskGnekikvqvLkvllnlseNpamtrell.sakvlssllslfnkk 187 
                  i+ l+++L   +  ++ +   vl+ l+  +   ++l+  a +l  l +l + +
  KOO23723.1 2815 IPRLVHVLRCKSADTREHAVAVLSALARSQGQNKKLIyDAAALEPLIALLDDQ 2867
                  78899999999999999999999999999999998884567777777777665 PP

>> V-ATPase_H_C  V-ATPase subunit H
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.0       1.1   1.5e+03      58     114 ..     243     299 ..     220     302 .. 0.80
   2 ?    5.4   0.0     0.014        19      44     104 ..     314     374 ..     303     383 .. 0.88
   3 !   12.8   0.0     7e-05     0.097      37     113 ..     426     501 ..     423     504 .. 0.91
   4 ?   -1.6   0.0         2   2.8e+03      44     104 ..     557     617 ..     549     626 .. 0.84
   5 !    7.6   0.4    0.0028       3.8      37     113 ..     712     787 ..     707     790 .. 0.87
   6 ?    0.9   0.0      0.34   4.7e+02      57     112 ..     823     880 ..     799     891 .. 0.75
   7 ?    0.4   0.1      0.48   6.6e+02      43     111 ..    1746    1814 ..    1737    1819 .. 0.81
   8 ?   -1.8   0.0       2.4   3.3e+03      41      94 ..    1911    1963 ..    1821    1967 .. 0.76
   9 ?   -3.7   0.0         9   1.2e+04      86     112 ..    2350    2376 ..    2340    2379 .. 0.77
  10 ?    1.8   0.0      0.17   2.4e+02      44     112 ..    2567    2634 ..    2549    2638 .. 0.87
  11 ?   -2.5   0.0         4   5.5e+03      35     106 ..    2806    2876 ..    2801    2881 .. 0.73

  Alignments for each domain:
  == domain 1  score: -0.7 bits;  conditional E-value: 1.1
  V-ATPase_H_C  58 tvlavalnDigelvkllpegkkvleklkaKekimellehedeevkyeALkavqkllv 114
                     ++ a+  ++e++    e ++ ++k +a + +++ll+++ +  + ++L a+ +l+ 
    KOO23723.1 243 DAQVSAADALSEMACDNAETQSAIAKAGAISPLLALLSSRSAAAQLKSLAALAQLMR 299
                   44444555678888888999999******************************9996 PP

  == domain 2  score: 5.4 bits;  conditional E-value: 0.014
  V-ATPase_H_C  44 lkkLiklleeskdktvlavalnDigelvkllpegkkvleklkaKekimelle.hedeevkye 104
                   +k ++ ll es++ +v + a+  + e+ +  p  ++++ +l++ +++ +l++ ++de+vk e
    KOO23723.1 314 VKPIVGLL-ESNTAEVASCAACALMEFSRANPAIQQTIVDLGGISQLRNLIKlSSDEKVKTE 374
                   78899999.58889999999999****************************9667****987 PP

  == domain 3  score: 12.8 bits;  conditional E-value: 7e-05
  V-ATPase_H_C  37 eeknfkllkkLiklleeskdktvlavalnDigelvkllpegkkvleklkaKekimellehedeevkyeALkavqkll 113
                   +++++ l + Li+ll  + +++ +  a + +g lv++ p+ ++v++k +  + +++ll+++++e k  AL + +  +
    KOO23723.1 426 QDNQVTLTQLLIELL-INGSPQAQERASKALGTLVHENPSAHEVIAKAGDPTALVTLLKSNNSEAKDYALWSFSLSI 501
                   4678999999*****.4788999***********************************************9887665 PP

  == domain 4  score: -1.6 bits;  conditional E-value: 2
  V-ATPase_H_C  44 lkkLiklleeskdktvlavalnDigelvkllpegkkvleklkaKekimellehedeevkye 104
                   +k Li+ll+ +++++  +  +n +++l+++ +  ++++++ +++  +++l ++++++ ky 
    KOO23723.1 557 IKPLINLLQLKAHPKARQHGANALANLATNPDACHEIVSSSGIRPLVLALDDEAQQTKKYV 617
                   8999****888889999999**********99***************99988877666654 PP

  == domain 5  score: 7.6 bits;  conditional E-value: 0.0028
  V-ATPase_H_C  37 eeknfkllkkLiklleeskdktvlavalnDigelvkllpegkkvleklkaKekimellehedeevkyeALkavqkll 113
                   +++++ +++kL+++l+ ++ k  +  a+  +++l+++ +e +k + + ++   ++e+l+++ ++ k +A  a+++l 
    KOO23723.1 712 NDNRVLIINKLVDMLQ-DSGKDAQEQAAASLANLARESEENRKSIVDANGIVPLLEILDSTSNKAKENAVGAIKELC 787
                   46678899*******5.4556677889999******************************************99886 PP

  == domain 6  score: 0.9 bits;  conditional E-value: 0.34
  V-ATPase_H_C  57 k..tvlavalnDigelvkllpegkkvleklkaKekimellehedeevkyeALkavqkl 112
                   +  + +++a+  ++e+++  p+ ++ +++ +a + ++ +l++  ++++  A  a+ +l
    KOO23723.1 823 SlvQLCTLAADALQEMARGNPKNQDAISEAGAIQPLVMMLTSYSSQMQASAAAALANL 880
                   2335667788889****************99977777777777788888877776655 PP

  == domain 7  score: 0.4 bits;  conditional E-value: 0.48
  V-ATPase_H_C   43 llkkLiklleeskdktvlavalnDigelvkllpegkkvleklkaKekimellehe.deevkyeALkavqk 111 
                     ++ L++ll +++d+ +   a+  i+ l+    e ++++ k k+ +k+++ll+++  eev+ eA  a+  
    KOO23723.1 1746 AIRPLVALL-SEDDDIIRKRAAGAIAALCVGSAENQDTVVKSKCIAKLVSLLASSvHEEVSAEAAAALAI 1814
                    678899999.4677788888899999999999999999999999999999988777999*9999888765 PP

  == domain 8  score: -1.8 bits;  conditional E-value: 2.4
  V-ATPase_H_C   41 fkllkkLiklleeskdktvlavalnDigelvkllpegkkvleklkaKekimell 94  
                     ++   L++ll  s+dk+  + a+  ++++++   + +++++k ++ e +++ll
    KOO23723.1 1911 EAIALFLVSLL-GSEDKQASTKAALAVSRFARASASNQRTIAKAGGIELLVSLL 1963
                    33444567777.467777777777777788887777777777777766666665 PP

  == domain 9  score: -3.7 bits;  conditional E-value: 9
  V-ATPase_H_C   86 aKekimellehedeevkyeALkavqkl 112 
                    + e +++ll++ ++e k +A +++ +l
    KOO23723.1 2350 GIEPLVTLLTNGNAEAKEHAANCLAQL 2376
                    556678899999999999999999876 PP

  == domain 10  score: 1.8 bits;  conditional E-value: 0.17
  V-ATPase_H_C   44 lkkLiklleeskdktvlavalnDigelvkllpegkkvleklkaKekimellehedeevkyeALkavqkl 112 
                    +  L++ll  s+++t++  a+  +++l++ + e +  ++k +a + ++++l +e+e  + +A  a+ +l
    KOO23723.1 2567 IAPLVALL-VSEHSTTQRFAAAALQSLARDHIENQIAISKAGAIAPLVDILGSENEGTQVHAVGALLSL 2634
                    55689999.5888999*********************************************99888666 PP

  == domain 11  score: -2.5 bits;  conditional E-value: 4
  V-ATPase_H_C   35 kleeknfkllkkLiklleeskdktvlavalnDigelvkllpegkkvleklkaKekimellehedeevkyeAL 106 
                    k++ ++   + +L+++l+  k+  +   a+  ++ l++   + kk++ +  a e +++ll+++ +  +++A 
    KOO23723.1 2806 KIQMRDAGAIPRLVHVLR-CKSADTREHAVAVLSALARSQGQNKKLIYDAAALEPLIALLDDQRSMTQRHAA 2876
                    666777788889999993.44444444444558889999999999999998888888888888887777775 PP

>> DUF5578  Family of unknown function (DUF5578)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.4   0.1      0.26   3.6e+02     188     249 ..      66     132 ..      20     156 .. 0.57
   2 ?    1.0   0.1      0.17   2.3e+02     190     248 ..     110     172 ..      62     195 .. 0.56
   3 ?   -1.1   0.1      0.73     1e+03     189     225 ..     150     186 ..     144     226 .. 0.75
   4 ?    3.5   0.3      0.03        41     162     251 ..     200     299 ..     184     311 .. 0.73
   5 ?    3.2   0.1     0.035        48     166     260 ..     246     348 ..     224     356 .. 0.66
   6 !    5.9   0.1    0.0052       7.2     133     253 ..     340     462 ..     310     484 .. 0.76
   7 ?    4.6   0.1     0.013        18     161     250 ..     444     541 ..     438     565 .. 0.77
   8 ?   -1.5   0.1         1   1.4e+03     101     179 ..     553     628 ..     527     664 .. 0.61
   9 ?    4.0   0.2     0.021        29     167     252 ..     700     789 ..     637     803 .. 0.82
  10 ?   -0.1   0.1      0.37   5.1e+02     220     257 ..     851     888 ..     826     901 .. 0.64
  11 ?    3.1   0.1     0.039        54     113     223 ..     903    1014 ..     892    1056 .. 0.79
  12 ?    0.7   0.0       0.2   2.8e+02      73     185 ..    1032    1141 ..    1026    1145 .. 0.60
  13 !    8.2   0.0    0.0011       1.5     161     266 ..    1468    1580 ..    1414    1582 .. 0.84
  14 ?   -1.1   0.1      0.72   9.9e+02     141     184 ..    1781    1824 ..    1745    1827 .. 0.74
  15 !    9.4   0.1   0.00047      0.65     102     211 ..    1829    1938 ..    1824    1966 .. 0.81
  16 ?    3.0   0.1      0.04        55     162     250 ..    2152    2244 ..    2138    2254 .. 0.77
  17 ?    1.4   0.2      0.13   1.8e+02     100     176 ..    2303    2377 ..    2281    2382 .. 0.79
  18 !    5.7   0.3    0.0064       8.8     190     266 ..    2570    2653 ..    2550    2685 .. 0.81
  19 ?    2.8   0.0     0.046        64     149     253 ..    2774    2844 ..    2712    2887 .. 0.51

  Alignments for each domain:
  == domain 1  score: 0.4 bits;  conditional E-value: 0.26
     DUF5578 188 kgliallacsspkaqqlalqtlrvvqeivkeakpsive.....pllelLkslhlevqyeaielikel 249
                   l+ ll++ + ++q  a+ tl v++    +a++++v      pl++lLk    +vq  a + + +l
  KOO23723.1  66 APLVKLLSSGTAHSQESAAATLGVLSLGKVDAQSAVVAaggivPLVTLLKMGSPKVQEVAASALAAL 132
                 4566666666666666666666666665555555554322222566666666666666555555444 PP

  == domain 2  score: 1.0 bits;  conditional E-value: 0.17
     DUF5578 190 liallacsspkaqqlalqtlrvvqeivkeak....psivepllelLkslhlevqyeaielike 248
                 l++ll+  spk q +a+++l  +   +++ +       +  l+++Lk      q+ a + i +
  KOO23723.1 110 LVTLLKMGSPKVQEVAASALAALDADISHQHgiikAGAIPHLIAILKGSSGAAQAFAAQAIAN 172
                 677777777777777777777777666665522213335555566655555555555555544 PP

  == domain 3  score: -1.1 bits;  conditional E-value: 0.73
     DUF5578 189 gliallacsspkaqqlalqtlrvvqeivkeakpsive 225
                  lia+l+ ss  aq +a+q++  +     e+++si +
  KOO23723.1 150 HLIAILKGSSGAAQAFAAQAIANAAAFSCEVQRSICN 186
                 599*****************99988888888777765 PP

  == domain 4  score: 3.5 bits;  conditional E-value: 0.03
     DUF5578 162 eetqeeaqklleslaegnPkyqkqvykg.....liallacsspkaqqlalqtlrvvqeivkeakpsi.....vepllelLkslhlevqyeaielikelm 250
                  ++q+ a + l +la+ n + q q+ ++     l+all+     aq  a+++l  + +   e++++i     ++pll+lL+s     q +++  + +lm
  KOO23723.1 200 GKAQKPAASALAKLAHDNKEVQAQITEAggiapLLALLNGIDMDAQVSAADALSEMACDNAETQSAIakagaISPLLALLSSRSAAAQLKSLAALAQLM 298
                 567888888889999999999999876444444888888888888888888887776655554443322222889999999999999999999888888 PP

     DUF5578 251 s 251
                 +
  KOO23723.1 299 R 299
                 5 PP

  == domain 5  score: 3.2 bits;  conditional E-value: 0.035
     DUF5578 166 eeaqklleslaegnPkyqkqvykg.....liallacsspkaqqlalqtlrvvqeiv.....keakpsivepllelLkslhlevqyeaielikelmstev 254
                  +a + l+++a  n + q+ + k+     l+all+++s  aq  +l +l  + +       ++ak   v+p++ lL+s   ev + a   + e+ +   
  KOO23723.1 246 VSAADALSEMACDNAETQSAIAKAgaispLLALLSSRSAAAQLKSLAALAQLMRGNrdnqdSTAKLGGVKPIVGLLESNTAEVASCAACALMEFSRA-- 342
                 55555666666666666666554333333999999999999988888877665433111114566788999999**999999998776665555544.. PP

     DUF5578 255 raallk 260
                 ++a+++
  KOO23723.1 343 NPAIQQ 348
                 444444 PP

  == domain 6  score: 5.9 bits;  conditional E-value: 0.0052
     DUF5578 133 anaGrkyKEliCEsygvravaeclakskseetqeeaqklleslaegnP..kyqkqvykgliallacsspkaqqlalqtlrvvqeivkeakpsiveplle 229
                 + a    + +i +  g+ ++ +++  s+ e+++ e+   ++sl+e     k      ++l+all + s +a+  +l ++  +    ++ + ++ + l+e
  KOO23723.1 340 SRANPAIQQTIVDLGGISQLRNLIKLSSDEKVKTEVAGAIWSLSEDTEikKSFASSLSSLVALLGTGSARARTHVLGAISYLGLDNQDNQVTLTQLLIE 438
                 556666667777888999999999999999999999999999998754214445567899999999999999999999999999999999999999999 PP

     DUF5578 230 lLkslhlevqyeaielikelmste 253
                 lL +   + q  a + + +l++++
  KOO23723.1 439 LLINGSPQAQERASKALGTLVHEN 462
                 999999999999999999888763 PP

  == domain 7  score: 4.6 bits;  conditional E-value: 0.013
     DUF5578 161 seetqeeaqklleslaegnPkyqkqvyk.....gliallacsspkaqqlalqtlrvvqeivkeak...psivepllelLkslhlevqyeaielikelm 250
                 s ++qe+a+k l +l++ nP+ ++ + k     +l++ll+++  +a+ +al +  +  e+  ++       v pl++ L+ + + ++ +a   + +l+
  KOO23723.1 444 SPQAQERASKALGTLVHENPSAHEVIAKagdptALVTLLKSNNSEAKDYALWSFSLSIETNIQSIismAGGVPPLIHQLSDARVLIKEQAAAALAKLA 541
                 6789*******************99987444446****************977665433333333012456889999999999988888888877776 PP

  == domain 8  score: -1.5 bits;  conditional E-value: 1
     DUF5578 101 EiGGvltlleilglkqlkeedkaealkllqlvanaGrkyKEliCEsygvravaeclakskseetqeeaqklleslaegn 179
                 E GG+  l+++l+lk    + ++   + l  +a       E++  s g+r +   l   + ++t++++ + l sl++g 
  KOO23723.1 553 ECGGIKPLINLLQLKAHPKARQHG-ANALANLATNPDACHEIV-SSSGIRPLVLALDD-EAQQTKKYVARALASLSKGQ 628
                 667777777777766544333322.233333333334444443.34466655544433.34555555555555555554 PP

  == domain 9  score: 4.0 bits;  conditional E-value: 0.021
     DUF5578 167 eaqklleslaegnPkyqkqvykgliallacsspkaqqlalqtlrvvqeivkeakpsive.....pllelLkslhlevqyeaielikelmst 252
                 +a+  l  l+  n + +  + + l+ +l+ s + aq  a+ +l  + +  +e ++siv+     plle+L s+  + + +a+  ikel + 
  KOO23723.1 700 HAEGALVRLSIENDN-RVLIINKLVDMLQDSGKDAQEQAAASLANLARESEENRKSIVDangivPLLEILDSTSNKAKENAVGAIKELCRN 789
                 555555555555543.455667899999999999************999999999999855555699********************9865 PP

  == domain 10  score: -0.1 bits;  conditional E-value: 0.37
     DUF5578 220 kpsivepllelLkslhlevqyeaielikelmstevraa 257
                 +   ++pl+ +L+s  +++q+ a   + +l++ +++++
  KOO23723.1 851 EAGAIQPLVMMLTSYSSQMQASAAAALANLAQNHIENQ 888
                 23456677777777777777777777777776666544 PP

  == domain 11  score: 3.1 bits;  conditional E-value: 0.039
     DUF5578  113 glkqlkeedkaealkllqlvanaGrkyKEliCEsygvravaeclakskseetqeeaqklleslaegnPkyqkqvykgliallacss.pkaqqlalqt 208 
                  g+++ +e+ k e    +  +a   +  K++i    g+ ++  +l + k++++qe +   l  la+   + ++ + k l++l++ ss  ++   a + 
  KOO23723.1  903 GMREGSEAAKDECAAAILALATDHQGNKDVIVKVGGLDQLLGLLVTGKTDKSQECVAGTLAALASKHVDNRQLIAKRLVGLVSGSSaARSSDCAERV 999 
                  566778889999999999999999999*****************************************************99877514666677777 PP

     DUF5578  209 lrvvqeivkeakpsi 223 
                  l+  ++ v+++ ++ 
  KOO23723.1 1000 LKACSSFVSDSATNQ 1014
                  777766666555443 PP

  == domain 12  score: 0.7 bits;  conditional E-value: 0.2
     DUF5578   73 gtllekqlkaigiflsaasgkrylieFlEiGGvl.tlleilglkqlkeedkaealkllqlvanaGrkyKEliCEsygvravaeclakskseetqeea 168 
                  +t+  +q  a +  l  a+ +     Fl     +  ll +++++    e ++ a + l  va+     +  i  s g++    +la    e + e a
  KOO23723.1 1032 STMAITQAAAAHAVLCLACDNTNTQAFLAKSDAIpALLALVTKSS--AEAQEYATRALWYVASQ-EEIRQQIASSGGIKPFVSMLAA-DGEVAPELA 1124
                  555555555555566666666666666655443314444443333..23345567777777754.5667778888888888887774.667788888 PP

     DUF5578  169 qklleslaegnPkyqkq 185 
                   ++l  la++nP+ + q
  KOO23723.1 1125 AIMLVRLARSNPDVSIQ 1141
                  88888888888877666 PP

  == domain 13  score: 8.2 bits;  conditional E-value: 0.0011
     DUF5578  161 seetqeeaqklleslaegnPkyqkqvykgliallacsspkaqqlalqtlrvvqeivkeak.....psivepllelLkslhlevqyeaielikelm.. 250 
                  +e+++++a + l  la+ n + q+q+ k  ++ll  +   +q+ a++ +  + +  + ++        ++pl++lL+    +v+ e+ + +++++  
  KOO23723.1 1468 TEQARAHAANALARLATENEDSQSQIAKNCVGLLGNKKTGTQRRAARVISDLASGDPGSPvlivnAGAISPLVNLLSGGAADVKEEVARALSTIAln 1564
                  688999999**************************999999999999998888776655511111556789*****************999987732 PP

     DUF5578  251 stevraallkglvalL 266 
                  s   + a+ +glv+lL
  KOO23723.1 1565 SPSTQLAIASGLVELL 1580
                  557888999*****99 PP

  == domain 14  score: -1.1 bits;  conditional E-value: 0.72
     DUF5578  141 EliCEsygvravaeclakskseetqeeaqklleslaegnPkyqk 184 
                  +++  s  + ++  +la+s  ee+ +ea + l  la +n k q+
  KOO23723.1 1781 DTVVKSKCIAKLVSLLASSVHEEVSAEAAAALAILALNNKKNQD 1824
                  55666666777778888888888888888888888888877665 PP

  == domain 15  score: 9.4 bits;  conditional E-value: 0.00047
     DUF5578  102 iGGvltlleilglkqlkeedkaealkllqlvanaGrkyKE..liCEsygvravaeclakskseetqeeaqklleslaegnPkyqkqvykgliallac 196 
                   GG+  l++il+ +   ++ k  a   l  +a +G++y +   i ++ g+  +  +l  s s+e++e+a + l  la  n k ++ +   l++ll +
  KOO23723.1 1829 EGGIEALINILKSEGGGDNAKGAAASALGALA-SGKHYENqaAIANAGGIAPLVAVLGLS-SHEAREQAATALAALALDNTKNEEAIALFLVSLLGS 1923
                  69***************************998.69999753379*************998.56789999999***********************99 PP

     DUF5578  197 sspkaqqlalqtlrv 211 
                  + ++a   a+ ++  
  KOO23723.1 1924 EDKQASTKAALAVSR 1938
                  877776555444433 PP

  == domain 16  score: 3.0 bits;  conditional E-value: 0.04
     DUF5578  162 eetqeeaqklleslaegnPkyqkqvykg.....liallacsspkaqqlalqtlrvvqeivkeakpsivepllelLkslhlevqyeaielikelm 250 
                  + + e++ +ll++la+  P+ ++ + k+     l+  l++ s k+  +a+q+l ++    ++++    + l++lL s ++ v++ a e +  ++
  KOO23723.1 2152 SGAAEHVAQLLRNLAS-VPENRSAIAKAgavpeLVRQLESGSEKSMGMAAQALALIALDSDKSRALATQELVKLLGSDNVAVRKRASEALTCMA 2244
                  5556666677766654.3444444443222222899999*********************************************9999877655 PP

  == domain 17  score: 1.4 bits;  conditional E-value: 0.13
     DUF5578  100 lEiGGvltlleilglkqlkeedkaealkllqlvanaGrkyKEliCEsygvravaeclakskseetqeeaqkllesla 176 
                  +E G ++tl+e l+l +l+   +++a  +l+ +a  G + K +   + g++ +  +l++ +  e++e+a + l +la
  KOO23723.1 2303 VEAGCIVTLIESLRLGKLSAVAQEHAAAVLSGLAPIGENAKSI-ELAKGIEPLVTLLTNGNA-EAKEHAANCLAQLA 2377
                  799*******************************999998864.456788877777766654.45566666666555 PP

  == domain 18  score: 5.7 bits;  conditional E-value: 0.0064
     DUF5578  190 liallacsspkaqqlalqtlrvv.....qeivkeakpsivepllelLkslhlevqyeaielikelmstev..raallkglvalL 266 
                  l+all ++  ++q++a+ +l+++     ++++  +k   + pl+++L s +   q +a+  + +l+s++v  r+a++k+lv +L
  KOO23723.1 2570 LVALLVSEHSTTQRFAAAALQSLardhiENQIAISKAGAIAPLVDILGSENEGTQVHAVGALLSLASHDVssRNAVVKRLVPVL 2653
                  789999999999999887777651111144555666778999999999999999999999999999998833467888888776 PP

  == domain 19  score: 2.8 bits;  conditional E-value: 0.046
     DUF5578  149 vravaeclakskseetqeeaqklleslae.gnPkyqkqvykgliallacsspkaqqlalqtlrvvqeivkeakpsivepllelLkslhlevqyeaie 244 
                  +  + e+l+ s+s  tq++a   l++la+ +  k q+                                       + +l+++L+    + + +a+ 
  KOO23723.1 2774 IPPLVELLS-SHSPDTQKSAAGALWNLASsAESKIQM----------------------------------RDAGAIPRLVHVLRCKSADTREHAVA 2835
                  444444443.344444444444444433212333333..................................33344444444444444444444444 PP

     DUF5578  245 likelmste 253 
                  ++++l++++
  KOO23723.1 2836 VLSALARSQ 2844
                  444444332 PP

>> HEAT_EZ  HEAT-like repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.0   0.8    0.0063       8.7       2      55 .]      35      90 ..      34      90 .. 0.79
   2 ?   -0.5   0.5       1.3   1.8e+03       3      54 ..     121     172 ..     119     178 .. 0.70
   3 ?    2.4   4.6      0.18   2.4e+02       5      55 .]     246     297 ..     244     297 .. 0.86
   4 ?    3.7   0.5     0.068        94       8      52 ..     291     336 ..     290     337 .. 0.91
   5 ?    1.3   0.0      0.39   5.4e+02       7      55 .]     378     421 ..     372     421 .. 0.76
   6 ?    4.9   0.0     0.028        39       3      53 ..     447     498 ..     445     499 .. 0.86
   7 ?    1.7   0.0      0.29     4e+02       4      22 ..     530     548 ..     514     553 .. 0.71
   8 !    8.0   0.3    0.0031       4.3       4      55 .]     573     624 ..     570     624 .. 0.89
   9 ?    2.5   0.1      0.16   2.3e+02      29      55 .]     718     744 ..     713     744 .. 0.92
  10 ?    1.9   0.1      0.24   3.3e+02       5      53 ..     735     784 ..     733     786 .. 0.60
  11 ?    2.0   0.4      0.23   3.2e+02      25      55 .]     850     880 ..     829     884 .. 0.69
  12 ?    3.7   0.6     0.068        94      25      52 ..    1060    1087 ..    1040    1087 .. 0.86
  13 ?    1.3   0.1      0.36     5e+02      28      52 ..    1414    1438 ..    1402    1438 .. 0.86
  14 !    6.5   0.5    0.0089        12       4      40 ..    1472    1503 ..    1469    1515 .. 0.86
  15 ?    3.8   0.3      0.06        83       4      55 .]    1509    1561 ..    1506    1561 .. 0.83
  16 ?    2.0   0.9      0.23   3.2e+02       7      52 ..    1679    1726 ..    1675    1729 .. 0.76
  17 !    8.9   0.3    0.0016       2.2      29      55 .]    1746    1772 ..    1744    1772 .. 0.91
  18 !    7.2   0.9    0.0053       7.3       6      55 .]    1807    1859 ..    1803    1859 .. 0.89
  19 ?    5.3   0.9     0.021        29       4      54 ..    1892    1938 ..    1889    1939 .. 0.85
  20 ?   -0.4   0.0       1.3   1.7e+03      30      52 ..    2017    2038 ..    1994    2042 .. 0.64
  21 ?    5.6   0.1     0.017        24      30      52 ..    2057    2079 ..    2034    2082 .. 0.86
  22 ?    3.3   0.4     0.089   1.2e+02      10      53 ..    2164    2204 ..    2156    2208 .. 0.62
  23 ?    4.6   0.1     0.034        47      32      54 ..    2220    2242 ..    2211    2243 .. 0.82
  24 ?    5.9   0.3     0.014        19       5      55 .]    2326    2376 ..    2324    2376 .. 0.80
  25 ?   -1.6   0.0         3   4.1e+03       7      37 ..    2408    2439 ..    2408    2447 .. 0.81
  26 ?   -0.4   0.1       1.3   1.8e+03      30      54 ..    2567    2591 ..    2564    2592 .. 0.88
  27 ?   -2.2   0.1       4.6   6.3e+03      24      53 ..    2644    2669 ..    2623    2671 .. 0.60
  28 ?   -0.8   0.2       1.7   2.4e+03      10      47 ..    2670    2704 ..    2661    2705 .. 0.63
  29 !    6.5   0.1     0.009        12       5      52 ..    2708    2755 ..    2700    2758 .. 0.84
  30 !    7.3   0.0     0.005       6.8      28      52 ..    2772    2796 ..    2766    2799 .. 0.92
  31 !    7.3   0.9     0.005       6.9       3      50 ..    2829    2878 ..    2827    2883 .. 0.73
  32 !    6.8   0.1     0.007       9.7      29      52 ..    2899    2922 ..    2878    2922 .. 0.84

  Alignments for each domain:
  == domain 1  score: 7.0 bits;  conditional E-value: 0.0063
     HEAT_EZ  2 rvRraAawaLGrlaggepellqp..lvpeilpaLlalLnddsdeVRaaAagaLgnl 55
                +vR +Aa+ L +la ++  + qp  l   ++++L++lL++  ++ ++ Aa +Lg l
  KOO23723.1 35 EVRDHAAAQLRSLATQNHGQHQPdiLAANAVAPLVKLLSSGTAHSQESAAATLGVL 90
                5777777778555555555555558999*************************975 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 1.3
     HEAT_EZ   3 vRraAawaLGrlaggepellqp.lvpeilpaLlalLnddsdeVRaaAagaLgn 54 
                 v++ Aa+aL++l      ++++     ++p L+a L+ +s + +a Aa a++n
  KOO23723.1 121 VQEVAASALAAL-DADISHQHGiIKAGAIPHLIAILKGSSGAAQAFAAQAIAN 172
                 555566677543.3555566666777899999999987777888888888765 PP

  == domain 3  score: 2.4 bits;  conditional E-value: 0.18
     HEAT_EZ   5 raAawaLGrlaggepellqp.lvpeilpaLlalLnddsdeVRaaAagaLgnl 55 
                  +Aa aL+++a  ++e+++  +   ++ +LlalL++ s++ + +++ aL++l
  KOO23723.1 246 VSAADALSEMACDNAETQSAiAKAGAISPLLALLSSRSAAAQLKSLAALAQL 297
                 6899***99666666666666***********************99999987 PP

  == domain 4  score: 3.7 bits;  conditional E-value: 0.068
     HEAT_EZ   8 awaLGr.laggepellqplvpeilpaLlalLnddsdeVRaaAagaL 52 
                 ++aL+  + g+++++++++    +++ + lL++  +eV   Aa aL
  KOO23723.1 291 LAALAQlMRGNRDNQDSTAKLGGVKPIVGLLESNTAEVASCAACAL 336
                 6799889999****************************88888887 PP

  == domain 5  score: 1.3 bits;  conditional E-value: 0.39
     HEAT_EZ   7 AawaLGrlaggepellqplvpeilpaLlalLnddsdeVRaaAagaLgnl 55 
                 A+w L+     e+  +++     l  L+alL + s++ R+ ++ga++ l
  KOO23723.1 378 AIWSLS-----EDTEIKKSFASSLSSLVALLGTGSARARTHVLGAISYL 421
                 555553.....4455555556678889******************9975 PP

  == domain 6  score: 4.9 bits;  conditional E-value: 0.028
     HEAT_EZ   3 vRraAawaLGrlaggepellqp.lvpeilpaLlalLnddsdeVRaaAagaLg 53 
                  ++ A  aLG+l  ++p + +  +      aL+ lL++ ++e + +A++ ++
  KOO23723.1 447 AQERASKALGTLVHENPSAHEViAKAGDPTALVTLLKSNNSEAKDYALWSFS 498
                 5788889999988888888877788888999******************986 PP

  == domain 7  score: 1.7 bits;  conditional E-value: 0.29
     HEAT_EZ   4 RraAawaLGrlaggepell 22 
                 ++ Aa+aL+ la++++e++
  KOO23723.1 530 KEQAAAALAKLAFENKETC 548
                 5677777777777777765 PP

  == domain 8  score: 8.0 bits;  conditional E-value: 0.0031
     HEAT_EZ   4 RraAawaLGrlaggepellqp.lvpeilpaLlalLnddsdeVRaaAagaLgnl 55 
                 R ++a+aL++la  +p++++  + +  +++L+ +L d+ + +++++a+aL+ l
  KOO23723.1 573 RQHGANALANLA-TNPDACHEiVSSSGIRPLVLALDDEAQQTKKYVARALASL 624
                 8999******99.89999999899999*****9998888899********875 PP

  == domain 9  score: 2.5 bits;  conditional E-value: 0.16
     HEAT_EZ  29 ilpaLlalLnddsdeVRaaAagaLgnl 55 
                 i+  L+ +L+d+ ++ +++Aa  L+nl
  KOO23723.1 718 IINKLVDMLQDSGKDAQEQAAASLANL 744
                 7889******************99997 PP

  == domain 10  score: 1.9 bits;  conditional E-value: 0.24
     HEAT_EZ   5 raAawaLGr.laggepellqpl.vpeilpaLlalLnddsdeVRaaAagaLg 53 
                 + Aa+ L++ + + e +  + +    i+p+L   L + s + +++A+ga+ 
  KOO23723.1 735 EQAAASLANlARESEENRKSIVdANGIVPLLE-ILDSTSNKAKENAVGAIK 784
                 55666666643333333333330445555555.9999999*********85 PP

  == domain 11  score: 2.0 bits;  conditional E-value: 0.23
     HEAT_EZ  25 lvpeilpaLlalLnddsdeVRaaAagaLgnl 55 
                     ++ +L+ +L++ s+  +a Aa aL+nl
  KOO23723.1 850 SEAGAIQPLVMMLTSYSSQMQASAAAALANL 880
                 5666788888888888888888888888886 PP

  == domain 12  score: 3.7 bits;  conditional E-value: 0.068
     HEAT_EZ   25 lvpeilpaLlalLnddsdeVRaaAagaL 52  
                  + ++++paLlal + +s+e +++A +aL
  KOO23723.1 1060 AKSDAIPALLALVTKSSAEAQEYATRAL 1087
                  55799*********************98 PP

  == domain 13  score: 1.3 bits;  conditional E-value: 0.36
     HEAT_EZ   28 eilpaLlalLnddsdeVRaaAagaL 52  
                   ++ +L+alL++  +  R+++a aL
  KOO23723.1 1414 GVVVPLVALLSSGTAQARENTASAL 1438
                  57789*****************998 PP

  == domain 14  score: 6.5 bits;  conditional E-value: 0.0089
     HEAT_EZ    4 RraAawaLGrlaggepellqplvpeilpaLlalLndd 40  
                  R++Aa+aL+rla ++ + +++  +  + +L+      
  KOO23723.1 1472 RAHAANALARLATENEDSQSQIAKNCVGLLG-----N 1503
                  99******************99999999998.....4 PP

  == domain 15  score: 3.8 bits;  conditional E-value: 0.06
     HEAT_EZ    4 RraAawaLGrlaggepellqp.lvpeilpaLlalLnddsdeVRaaAagaLgnl 55  
                  +r Aa++++ la+g p    + +   ++ +L++lL+   ++V++ +a+aL+ +
  KOO23723.1 1509 QRRAARVISDLASGDPGSPVLiVNAGAISPLVNLLSGGAADVKEEVARALSTI 1561
                  78888888778888888877744467999******99999**********976 PP

  == domain 16  score: 2.0 bits;  conditional E-value: 0.23
     HEAT_EZ    7 AawaLGr.laggepellqplvpeilpaLlalLnddsd.eVRaaAagaL 52  
                  Aa++L+  +   ++  +q l++  + +L+ lL  +s+ + +aaAagaL
  KOO23723.1 1679 AAAVLADlAKISNKISMQILIEGGIGPLVVLLGKESSnAAKAAAAGAL 1726
                  66666556555566678888889999******66555377*******9 PP

  == domain 17  score: 8.9 bits;  conditional E-value: 0.0016
     HEAT_EZ   29 ilpaLlalLnddsdeVRaaAagaLgnl 55  
                  ++++L+alL+ d+d +R+ Aaga+++l
  KOO23723.1 1746 AIRPLVALLSEDDDIIRKRAAGAIAAL 1772
                  6899*******************9876 PP

  == domain 18  score: 7.2 bits;  conditional E-value: 0.0053
     HEAT_EZ    6 aAawaLGr.laggepellqplvpeilpaLlalLnd..dsdeVRaaAagaLgnl 55  
                   Aa+aL+  ++++ +++++++ +  + aL++ L++    d+ ++aAa aLg+l
  KOO23723.1 1807 EAAAALAIlALNNKKNQDKLASEGGIEALINILKSegGGDNAKGAAASALGAL 1859
                  57778877778999999999***************88888***********87 PP

  == domain 19  score: 5.3 bits;  conditional E-value: 0.021
     HEAT_EZ    4 RraAawaLGrlaggepellqp.lvpeilpaLlalLnddsdeVRaaAagaLgn 54  
                  R+ Aa aL++la     l+++ + ++i  +L++lL ++++   ++Aa a ++
  KOO23723.1 1892 REQAATALAALA-----LDNTkNEEAIALFLVSLLGSEDKQASTKAALAVSR 1938
                  99******9999.....55555999************999988888888776 PP

  == domain 20  score: -0.4 bits;  conditional E-value: 1.3
     HEAT_EZ   30 lpaLlalLnddsdeVRaaAagaL 52  
                  l +L+a+L d ++eV++ +agaL
  KOO23723.1 2017 LEPLIAML-DGHAEVQTDVAGAL 2038
                  66788777.35559977777776 PP

  == domain 21  score: 5.6 bits;  conditional E-value: 0.017
     HEAT_EZ   30 lpaLlalLnddsdeVRaaAagaL 52  
                  +p+L+alL++ s + +++AagaL
  KOO23723.1 2057 IPPLVALLKTGSHSAQETAAGAL 2079
                  8*********************9 PP

  == domain 22  score: 3.3 bits;  conditional E-value: 0.089
     HEAT_EZ   10 aLGrlaggepellqplvpeilpaLlalLnddsdeVRaaAagaLg 53  
                  +L++++++++   +     ++p+L++ L++ s +  + Aa aL+
  KOO23723.1 2164 NLASVPENRSAIAK---AGAVPELVRQLESGSEKSMGMAAQALA 2204
                  56555544444433...445556666666666688999999986 PP

  == domain 23  score: 4.6 bits;  conditional E-value: 0.034
     HEAT_EZ   32 aLlalLnddsdeVRaaAagaLgn 54  
                  +L++lL +d+ +VR+ A  aL+ 
  KOO23723.1 2220 ELVKLLGSDNVAVRKRASEALTC 2242
                  57777878888*********986 PP

  == domain 24  score: 5.9 bits;  conditional E-value: 0.014
     HEAT_EZ    5 raAawaLGrlaggepellqplvpeilpaLlalLnddsdeVRaaAagaLgnl 55  
                  ++Aa++L+ la  + ++ + ++ + + +L+ lL++ ++e ++ Aa +L++l
  KOO23723.1 2326 EHAAAVLSGLAPIGENAKSIELAKGIEPLVTLLTNGNAEAKEHAANCLAQL 2376
                  66777775544466666666888999**********************997 PP

  == domain 25  score: -1.6 bits;  conditional E-value: 3
     HEAT_EZ    7 AawaLGrlaggepellqp.lvpeilpaLlalL 37  
                  Aa+aL+++a ++++++ + + + ++ +L+a+ 
  KOO23723.1 2408 AARALSEIALENSDTQTQiAEEGAISPLVAMV 2439
                  899**998888888887778888888888776 PP

  == domain 26  score: -0.4 bits;  conditional E-value: 1.3
     HEAT_EZ   30 lpaLlalLnddsdeVRaaAagaLgn 54  
                  +++L+alL +++++++  Aa aL  
  KOO23723.1 2567 IAPLVALLVSEHSTTQRFAAAALQS 2591
                  6889999999999999999999976 PP

  == domain 27  score: -2.2 bits;  conditional E-value: 4.6
     HEAT_EZ   24 plvpeilpaLlalLnddsdeVRaaAagaLg 53  
                   +v++++p L       s++ + +Aa aL+
  KOO23723.1 2644 AVVKRLVPVLD----LRSATAQMNAAEALA 2669
                  34455555554....477777888888886 PP

  == domain 28  score: -0.8 bits;  conditional E-value: 1.7
     HEAT_EZ   10 aLGrlaggepel..lqplvpeilpaLlalLnddsdeVRaa 47  
                   L++   +++ +  ++++v+ ++++L+     d  +VRa 
  KOO23723.1 2670 LLAARSDENRKAitDADAVEPLVRLLG-----DGRRVRAG 2704
                  333333333333456779999999999.....99999986 PP

  == domain 29  score: 6.5 bits;  conditional E-value: 0.009
     HEAT_EZ    5 raAawaLGrlaggepellqplvpeilpaLlalLnddsdeVRaaAagaL 52  
                  + Aa++L+ la   ++  + +    + +L+a+L++ds +++++A gaL
  KOO23723.1 2708 ERAAAVLADLARSSDNKSSIVKVGGVGPLIAMLSSDSIATQTYASGAL 2755
                  677777776777777777778888999********************9 PP

  == domain 30  score: 7.3 bits;  conditional E-value: 0.005
     HEAT_EZ   28 eilpaLlalLnddsdeVRaaAagaL 52  
                   ++p+L+ lL++ s+++++ AagaL
  KOO23723.1 2772 GAIPPLVELLSSHSPDTQKSAAGAL 2796
                  589*********************9 PP

  == domain 31  score: 7.3 bits;  conditional E-value: 0.005
     HEAT_EZ    3 vRraAawaLGrlaggepellqp.lvpeilpaLlalLnddsdeV.RaaAag 50  
                   R++A+++L++la   ++  ++ +  ++l +L+alL d  +++ R aA+ 
  KOO23723.1 2829 TREHAVAVLSALARSQGQNKKLiYDAAALEPLIALLDDQRSMTqRHAACC 2878
                  6999999999955333333333588899********88777665888884 PP

  == domain 32  score: 6.8 bits;  conditional E-value: 0.007
     HEAT_EZ   29 ilpaLlalLnddsdeVRaaAagaL 52  
                  ++p L+++Ln d+ e+R+ Aa aL
  KOO23723.1 2899 AIPKLANMLNKDDLETRGFAAAAL 2922
                  79*******************998 PP

>> KAP  Kinesin-associated protein (KAP)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.0   0.0       2.2     3e+03     359     402 ..     175     218 ..     172     233 .. 0.86
   2 ?   -2.8   0.0       0.9   1.2e+03     322     408 ..     303     393 ..     291     398 .. 0.79
   3 ?   -2.8   0.0      0.89   1.2e+03     330     418 ..     716     808 ..     705     843 .. 0.63
   4 ?   -3.5   0.0       1.5     2e+03     329     385 ..    1412    1468 ..    1406    1494 .. 0.80
   5 ?    0.2   0.1      0.11   1.6e+02     361     452 ..    1734    1829 ..    1723    1840 .. 0.65
   6 ?   -1.8   0.0      0.47   6.5e+02     312     408 ..    2160    2218 ..    2144    2251 .. 0.54
   7 !    7.3   0.0   0.00081       1.1     295     395 ..    2736    2838 ..    2712    2856 .. 0.83

  Alignments for each domain:
  == domain 1  score: -4.0 bits;  conditional E-value: 2.2
         KAP 359 sfdtglrrkmikvgllpklvalladdkhklialkvlyhvslddk 402
                 +f ++++r + ++g +p l  ll+  k ++ a   l +++ d+k
  KOO23723.1 175 AFSCEVQRSICNAGSIPLLLSLLGAGKAQKPAASALAKLAHDNK 218
                 688899999********************999999999999987 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 0.9
         KAP 322 enkdemaeldiveklaklvqsehedllnitlklllnlsf.dtglrrkmikvgllpk...lvalladdkhklialkvlyhvslddkvksmft 408
                 +n+d  a+l  v+ ++ l++s+  ++   +   l+++s  +  +++ ++++g + +   l++l +d+k k+ +   ++ +s d  +k  f+
  KOO23723.1 303 DNQDSTAKLGGVKPIVGLLESNTAEVASCAACALMEFSRaNPAIQQTIVDLGGISQlrnLIKLSSDEKVKTEVAGAIWSLSEDTEIKKSFA 393
                 7888888888899999999999999999998888888862567888999998665511156666899999999999999****99999987 PP

  == domain 3  score: -2.8 bits;  conditional E-value: 0.89
         KAP 330 ldiveklaklvqsehedllnitlklllnlsfdtglrrkmi..kvgllpklvalla.ddkhklialkvlyhvslddkv.ksmftytdciqmlmk 418
                 + i++kl+ ++q + +d  + +   l nl+ +++  rk i  + g++p l  l +  +k k+ a+  +  +  + k  +++ t++  i++l+ 
  KOO23723.1 716 VLIINKLVDMLQDSGKDAQEQAAASLANLARESEENRKSIvdANGIVPLLEILDStSNKAKENAVGAIKELCRNSKNnQTIVTRAGGIPKLVG 808
                 457888888888888888888888888888887766665433457777776654313445556666665555555431345555566665555 PP

  == domain 4  score: -3.5 bits;  conditional E-value: 1.5
         KAP  329 eldiveklaklvqsehedllnitlklllnlsfdtglrrkmikvgllpklvalladdk 385 
                  +  +v  l+ l+ s   +  + t   l  l++d+++r  + k g +  lva+l+d  
  KOO23723.1 1412 KAGVVVPLVALLSSGTAQARENTASALWHLALDGQIRLAIAKCGGISPLVAILDDGT 1468
                  556777788888888888888888899999999999999999999999999998754 PP

  == domain 5  score: 0.2 bits;  conditional E-value: 0.11
         KAP  361 dtglrrkmikvgllpklvalladdk...hklialkvlyhvslddkvksmftytdciqmlmkallesldekvdlelialcinlal.nkrnaqliveg 452 
                  + +l++ + ++g +  lvall++d+    k+ a  +          +    +++ci +l+ +l  s +e v  e  a    lal nk+n + ++  
  KOO23723.1 1734 QVDLQKAVCDAGAIRPLVALLSEDDdiiRKRAAGAIAALCVGSAENQDTVVKSKCIAKLVSLLASSVHEEVSAEAAAALAILALnNKKNQDKLASE 1829
                  568888889999999999999876523223333333332233344556677889******************998765555665156665544433 PP

  == domain 6  score: -1.8 bits;  conditional E-value: 0.47
         KAP  312 sflkklsivvenkdemaeldiveklaklvqsehedllnitlklllnlsfdtglrrkmikvgllpklvalladdkhklialkvlyhvslddkvksmft 408 
                   +l+ l+ v en+  +a+   v  l++ ++s  e  + ++ + l  +++d++  r                                      ++ t
  KOO23723.1 2160 QLLRNLASVPENRSAIAKAGAVPELVRQLESGSEKSMGMAAQALALIALDSDKSR--------------------------------------ALAT 2218
                  4444555555555555555555555555555555444444444444444444333......................................3322 PP

  == domain 7  score: 7.3 bits;  conditional E-value: 0.00081
         KAP  295 lvkaldrdniellilvvsflkklsivvenkdemaeldiveklaklvqsehedllnitlklllnlsfdtglrrkmikvgllpklvalla..ddkhkli 389 
                  l+  l  d i      +  l +ls ++ n+  +ae   +  l+ l+ s+  d  + +   l nl+  ++ + +m ++g +p+lv++l     + ++ 
  KOO23723.1 2736 LIAMLSSDSIATQTYASGALLQLSALGTNRSTIAEAGAIPPLVELLSSHSPDTQKSAAGALWNLASSAESKIQMRDAGAIPRLVHVLRckSADTREH 2832
                  677788888888888899999***************************************************************9985223344555 PP

         KAP  390 alkvly 395 
                  a+ vl 
  KOO23723.1 2833 AVAVLS 2838
                  555554 PP

>> DUF3361  Domain of unknown function (DUF3361)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.1         5   6.9e+03      41     117 ..      51      83 ..      20     132 .. 0.50
   2 ?    5.2   0.2     0.014        19      70     132 ..     243     305 ..     223     353 .. 0.88
   3 ?    0.5   0.0      0.37     5e+02      70     118 ..     446     494 ..     437     497 .. 0.88
   4 ?   -3.5   0.0       6.3   8.6e+03      71     110 ..     529     568 ..     521     585 .. 0.69
   5 ?    2.3   0.6      0.11   1.5e+02      55     129 ..     719     791 ..     709     800 .. 0.65
   6 ?    3.2   0.8     0.054        75      69     127 ..     825     883 ..     816     894 .. 0.83
   7 ?    4.5   0.0     0.023        31      50     109 ..    1784    1842 ..    1729    1871 .. 0.90
   8 ?   -1.0   0.0       1.1   1.5e+03      64     136 ..    1981    2050 ..    1977    2084 .. 0.75
   9 ?   -3.5   0.1       6.2   8.6e+03      89     122 ..    2171    2207 ..    2158    2230 .. 0.67
  10 ?   -2.5   0.0       3.1   4.2e+03      10     105 ..    2349    2438 ..    2345    2444 .. 0.62
  11 ?   -1.1   0.2       1.1   1.6e+03      90     129 ..    2600    2639 ..    2567    2686 .. 0.55
  12 ?    6.4   0.0    0.0058       8.1      10     133 ..    2731    2849 ..    2724    2890 .. 0.76

  Alignments for each domain:
  == domain 1  score: -3.1 bits;  conditional E-value: 5
     DUF3361  41 dhgivsWdtlsdeFikkiasivnksaadasilqrslaiLesivlnsselyelvekevtlesLiehLqssnqeiqtna 117
                 +hg ++ d+l  + +                                              L++ L+s +++ q +a
  KOO23723.1  51 NHGQHQPDILAANAV--------------------------------------------APLVKLLSSGTAHSQESA 83 
                 233333333333333............................................333333333333333322 PP

  == domain 2  score: 5.2 bits;  conditional E-value: 0.014
     DUF3361  70 silqrslaiLesivlnsselyelvekevtlesLiehLqssnqeiqtnalaLlnALllkaddsk 132
                   + ++ + L ++++ + e+ + ++k+  ++ L++ L+s ++  q ++la l  L++  +d++
  KOO23723.1 243 DAQVSAADALSEMACDNAETQSAIAKAGAISPLLALLSSRSAAAQLKSLAALAQLMRGNRDNQ 305
                 4556788999******************************************99988766555 PP

  == domain 3  score: 0.5 bits;  conditional E-value: 0.37
     DUF3361  70 silqrslaiLesivlnsselyelvekevtlesLiehLqssnqeiqtnal 118
                 + ++r+ + L  +v+ + + +e+++k+   + L++ L+s+n+e + +al
  KOO23723.1 446 QAQERASKALGTLVHENPSAHEVIAKAGDPTALVTLLKSNNSEAKDYAL 494
                 557788889999*****************************99887776 PP

  == domain 4  score: -3.5 bits;  conditional E-value: 6.3
     DUF3361  71 ilqrslaiLesivlnsselyelvekevtlesLiehLqssn 110
                 i +++ a L +++  ++e+++l+++   ++ Li+ Lq + 
  KOO23723.1 529 IKEQAAAALAKLAFENKETCALITECGGIKPLINLLQLKA 568
                 6677778888888888888888888777888888776543 PP

  == domain 5  score: 2.3 bits;  conditional E-value: 0.11
     DUF3361  55 ikkiasivnksaadasilqrslaiLesivlnsselyelvekevtlesLiehLqssnqeiqtnalaLlnALllkad 129
                 i+k +++++ s   +  ++++ a L +++  s+e+ + + ++  +  L+e L+s++++ + na+  +  L+++++
  KOO23723.1 719 INKLVDMLQDS--GKDAQEQAAASLANLARESEENRKSIVDANGIVPLLEILDSTSNKAKENAVGAIKELCRNSK 791
                 44444444444..34555666666777777777777777777777777777777777777777777777776665 PP

  == domain 6  score: 3.2 bits;  conditional E-value: 0.054
     DUF3361  69 asilqrslaiLesivlnsselyelvekevtlesLiehLqssnqeiqtnalaLlnALllk 127
                 ++++  + + L++++  + ++ + ++++  ++ L+++L s ++++q +a a l  L ++
  KOO23723.1 825 VQLCTLAADALQEMARGNPKNQDAISEAGAIQPLVMMLTSYSSQMQASAAAALANLAQN 883
                 4556667789999************************************9988888765 PP

  == domain 7  score: 4.5 bits;  conditional E-value: 0.023
     DUF3361   50 lsdeFikkiasivnksaadasilqrslaiLesivlnsselyelvekevtlesLiehLqss 109 
                  +++++i+k +s + +s   +++  ++ a L  ++ln++++ +++++e  +e Li+ L+s+
  KOO23723.1 1784 VKSKCIAKLVSLLASS-VHEEVSAEAAAALAILALNNKKNQDKLASEGGIEALINILKSE 1842
                  6788999999999998.7788888888888888999999999999999999999999875 PP

  == domain 8  score: -1.0 bits;  conditional E-value: 1.1
     DUF3361   64 ksaad.asilqrslaiLesivlnsselyelvekevtlesLiehLqssnqeiqtnalaLlnALllkaddskrkel 136 
                  + a d a +++   a L s++ ns e+  +++k   le Li++L+ +  e+qt +     AL++ +dd++ +e 
  KOO23723.1 1981 RAALDvALVQKDMAAALWSMAYNSPENQMTIAKVGGLEPLIAMLDGHA-EVQTDVAG---ALWALSDDEHNRET 2050
                  5566633444455568999999**999999999999999999997764.57776554...44444555555554 PP

  == domain 9  score: -3.5 bits;  conditional E-value: 6.2
     DUF3361   89 lyelvekevtlesLiehLqssnqe...iqtnalaLln 122 
                  + + ++k+  +++L++ L+s +++   +  +alaL+ 
  KOO23723.1 2171 NRSAIAKAGAVPELVRQLESGSEKsmgMAAQALALIA 2207
                  4567778888899999998766654456777777774 PP

  == domain 10  score: -2.5 bits;  conditional E-value: 3.1
     DUF3361   10 dGlkllvkiveegkesgeilayaLtafleLmdhgivsWd..tlsdeFikkiasivnksaadasilqrslaiLesivlnsselyelvekevtlesLie 104 
                  +G++ lv+++ +g  + e  ++a +++ +L  h   s d     ++F+k  a+        ++++ r+l+   +i+l +s++ +++++e  ++ L++
  KOO23723.1 2349 KGIEPLVTLLTNG--NAEAKEHAANCLAQLARHAGASLDiaAAVPAFVKWLANPNLG---PPEVAARALS---EIALENSDTQTQIAEEGAISPLVA 2437
                  6888888888888..557778888888888888888877323345666666543222...3555555544...455666666666666666666665 PP

     DUF3361  105 h 105 
                  +
  KOO23723.1 2438 M 2438
                  5 PP

  == domain 11  score: -1.1 bits;  conditional E-value: 1.1
     DUF3361   90 yelvekevtlesLiehLqssnqeiqtnalaLlnALllkad 129 
                     ++k+  +  L++ L s+n+  q +a+  l +L  +  
  KOO23723.1 2600 QIAISKAGAIAPLVDILGSENEGTQVHAVGALLSLASHDV 2639
                  5555555555555555555555555555554444443322 PP

  == domain 12  score: 6.4 bits;  conditional E-value: 0.0058
     DUF3361   10 dGlkllvkiveegkesgeilayaLtafleLmdhgivsWdtlsdeFikkiasivnksaadasilqrslaiLesivlnsselyelvekevtlesLiehL 106 
                  +G+  l+ ++ ++  s  + +ya  a+l+L   g+    + +   i   ++ ++++   + +++++   L +++ +++++  +++++  +++L++ L
  KOO23723.1 2731 GGVGPLIAMLSSD--SIATQTYASGALLQLSALGTNRSTIAEAGAIPPLVELLSSH--SPDTQKSAAGALWNLASSAESKI-QMRDAGAIPRLVHVL 2822
                  6666677777666..44666777777777777777777777777777777777777..77788888888888888877655.467788899999999 PP

     DUF3361  107 qssnqeiqtnalaLlnALllkaddskr 133 
                  + +++    +a+a+l AL +   ++k+
  KOO23723.1 2823 RCKSADTREHAVAVLSALARSQGQNKK 2849
                  999999999999999999877665544 PP

>> DUF913  Domain of Unknown Function (DUF913)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.0         2   2.8e+03     127     156 ..     453     482 ..     450     517 .. 0.77
   2 ?    4.2   0.0     0.013        17     337     366 ..     541     570 ..     531     571 .. 0.88
   3 ?   -4.0   0.0       4.1   5.6e+03     121     156 ..     827     862 ..     825     896 .. 0.74
   4 ?   -2.0   0.0         1   1.4e+03     125     207 ..    1512    1591 ..    1511    1604 .. 0.74
   5 ?   -2.4   0.0       1.3   1.8e+03     174     211 ..    1768    1806 ..    1766    1829 .. 0.78
   6 ?   -1.1   0.0      0.53   7.3e+02     338     362 ..    1817    1841 ..    1803    1843 .. 0.85
   7 ?    0.4   0.0      0.18   2.5e+02     320     364 ..    1926    1967 ..    1887    1970 .. 0.82

  Alignments for each domain:
  == domain 1  score: -3.0 bits;  conditional E-value: 2
      DUF913 127 nilsdfihnePtslavlqeaglteslLeal 156
                 + l +++h+ P+  +v+++ag +++l + l
  KOO23723.1 453 KALGTLVHENPSAHEVIAKAGDPTALVTLL 482
                 567899999999999999999888776654 PP

  == domain 2  score: 4.2 bits;  conditional E-value: 0.013
      DUF913 337 llsnnslcreFvekgGiellldlltlpslP 366
                  ++n+++c+   e+gGi++l++ll+l+  P
  KOO23723.1 541 AFENKETCALITECGGIKPLINLLQLKAHP 570
                 479***********************9877 PP

  == domain 3  score: -4.0 bits;  conditional E-value: 4.1
      DUF913 121 vwslAvnilsdfihnePtslavlqeaglteslLeal 156
                 + +lA++ l+++    P +  +++eag ++ l   l
  KOO23723.1 827 LCTLAADALQEMARGNPKNQDAISEAGAIQPLVMML 862
                 678888888888888888888888888887665554 PP

  == domain 4  score: -2.0 bits;  conditional E-value: 1
      DUF913  125 AvnilsdfihnePtslavlqeaglteslLeallakgilpsrEvlasiPnvlsalcLNnaGlelfksskalesl.feifespehv 207 
                  A+ ++sd+   +P s   + +ag ++ l +  l+ g   ++     +  +ls++ LN+   +l  +s+ +e l   + es+ehv
  KOO23723.1 1512 AARVISDLASGDPGSPVLIVNAGAISPLVNL-LSGGAADVK---EEVARALSTIALNSPSTQLAIASGLVELLgTGTAESQEHV 1591
                  6677777777777777777777777777776.666655444...47889**********9999999998876633466666666 PP

  == domain 5  score: -2.4 bits;  conditional E-value: 1.3
      DUF913  174 vlsalcLNn.aGlelfksskaleslfeifespehvkame 211 
                  ++ alc  + + ++ +++sk + +l++ + s  h ++  
  KOO23723.1 1768 AIAALCVGSaENQDTVVKSKCIAKLVSLLASSVHEEVSA 1806
                  677888865156889*******************88874 PP

  == domain 6  score: -1.1 bits;  conditional E-value: 0.53
      DUF913  338 lsnnslcreFvekgGiellldlltl 362 
                  l+n++++ ++ ++gGie+l+++l++
  KOO23723.1 1817 LNNKKNQDKLASEGGIEALINILKS 1841
                  57788999**************987 PP

  == domain 7  score: 0.4 bits;  conditional E-value: 0.18
      DUF913  320 knslldyilnvakFLeallsnnslcreFvekgGiellldlltlps 364 
                  k++ ++  l+v++F  a  sn+   r   ++gGiell++ll++p+
  KOO23723.1 1926 KQASTKAALAVSRFARASASNQ---RTIAKAGGIELLVSLLDVPG 1967
                  5556777778888888877775...56679************997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (3278 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       850  (0.0474092); expected 358.6 (0.02)
Passed bias filter:                      445  (0.0248201); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                        18  (0.00100396); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 1.81u 0.35s 00:00:02.16 Elapsed: 00:00:00.61
# Mc/sec: 16127.73
//
Query:       KOO23724.1  [L=553]
Description: sialate o-acetylesterase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.9e-17   62.7   0.0    1.9e-16   60.4   0.0    2.0  1  SASA      Carbohydrate esterase, sialic acid-specific acetyle


Domain annotation for each model (and alignments):
>> SASA  Carbohydrate esterase, sialic acid-specific acetylesterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.4   0.0   1.1e-20   1.9e-16       3     202 ..     106     373 ..     104     397 .. 0.76

  Alignments for each domain:
  == domain 1  score: 60.4 bits;  conditional E-value: 1.1e-20
        SASA   3 difllaGQSNmaGrGgvekdgvvpeeckpnp.rilrlnadleweeAkePlhadidvk......................k...........vagvgpgl 67 
                 d+++++GQSNma   +++ +g++  e++ n+   +rl ++++ + A+  l+  +d++                      +           +      +
  KOO23724.1 106 DVWVCSGQSNMAFLTEMAMNGQTLVEEAGNHgAQVRLFTTRKLTAASPLLELGQDTNgglwtrgvelpwsrasrktisdDgaapstndddwLYMSAVCY 204
                 8************99999977776666666669999999999988877779999996667777777777776666555505556666677666667789 PP

        SASA  68 aFAkellkekskvvigLvpcAvGGtsieeWekg...........................eslYeelvkrakaalkkkikgiLWyQGEsDaekeedaea 139
                  F+ e+  ++++v++gL+ +  GGt+ie+W+++                           ++lY+++++ + ++   +ikg +WyQGEs+++++   + 
  KOO23724.1 205 LFGLEIN-RARGVPVGLINTNWGGTQIEDWMPQqaiddcshgtsdangslpevvlaprvaTHLYNAMISPLLNQ---TIKGAIWYQGESNSARP---AD 296
                 9****99.779********************9667778888899999999********978*******988665...59***********9888...79 PP

        SASA 140 Ykekleklvedlrkdl.....gapdlpvivvqlasg.ekk....fvevvreaqlski....klpnvavvdakglelk 202
                 Y+ +l ++v++ r+        +p+ p+ vvqla +  ++      + v ++q +++     lpn+ + +a +l   
  KOO23724.1 297 YSCQLPAMVKHWRAGWaagspTDPNFPFGVVQLAGNlGDPlqlpIFRFVGQTQSTGVlptsALPNSFLATAYDLGDA 373
                 *************987444445789********88432223233555566665555544446888888888777744 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (553 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       256  (0.0142785); expected 358.6 (0.02)
Passed bias filter:                      216  (0.0120475); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.53u 0.23s 00:00:00.76 Elapsed: 00:00:00.42
# Mc/sec: 3986.31
//
Query:       KOO23725.1  [L=282]
Description: hypothetical protein Ctob_006172 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.51   10.8   5.8        5.1    7.6   5.8    2.3  1  DUF3456   TLR4 regulator and MIR-interacting MSAP


Domain annotation for each model (and alignments):
>> DUF3456  TLR4 regulator and MIR-interacting MSAP
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.6   5.8   0.00028       5.1      84     156 .]      92     195 ..      61     195 .. 0.57

  Alignments for each domain:
  == domain 1  score: 7.6 bits;  conditional E-value: 0.00028
     DUF3456  84 e..............................dlkelkelkdkevkvdlgipse.lkdep.aevkelkkaCeelveeyEdeleelfke....ee.eedle 145
                                                +   ++  ++++ +  l++ s+ ++ +  +e  ++++aCee++++ + e +e++++    +   ++++
  KOO23725.1  92 RdvtefdgegavqeyvekmcnplkpegdwvgK---IDL-VEEGDQ--LQLASQpMHGKClKECRTIEYACEEILDKADTEFTEILYTavkdKTpVDKVQ 184
                 25555555555555555555555555532221...222.222222..2222220223346999************999998888877665555688999 PP

     DUF3456 146 ekLCeerskeC 156
                 +++C++ ++ C
  KOO23725.1 185 RFICNRAAGVC 195
                 9***9998888 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (282 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       580  (0.0323498); expected 358.6 (0.02)
Passed bias filter:                      408  (0.0227564); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.23s 00:00:00.68 Elapsed: 00:00:00.40
# Mc/sec: 2137.71
//
Query:       KOO23726.1  [L=418]
Description: RNA t4 family protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
      3e-12   46.9   0.0    4.6e-12   46.3   0.0    1.2  1  RNA_lig_T4_1  RNA ligase


Domain annotation for each model (and alignments):
>> RNA_lig_T4_1  RNA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.3   0.0   2.6e-16   4.6e-12       1     165 [.     212     365 ..     212     377 .. 0.84

  Alignments for each domain:
  == domain 1  score: 46.3 bits;  conditional E-value: 2.6e-16
  RNA_lig_T4_1   1 eaRGLfteenkeerIvvRgydKFFNinEveetkweeieqktqgpy.elteKenGclilisalsdgklvvaSkhsleaeshaevgerllekklekegk 96 
                   e RGL +++ + +r+++R y+KF   + ++e++++e+ +    p   ++eK +G+++  + +++g++++a++++   +s a  +e++l+    +eg+
    KOO23726.1 212 EMRGLAIHRPT-RRVLCRPYHKFWHAGQRPEQSERELAELLAAPAlPMLEKVDGVMVQGF-VIEGRVYLATRSGR--TSAAMEAESHLRG---DEGQ 301
                   57********9.7************************999977751579***********.*************9..5555556657776...8899 PP

  RNA_lig_T4_1  97 teeeLaeelleknlTavfElcddsfeehivaypeekagLyLhglnentp.efstesseevakfakefgfi 165
                   +  +La+  ++ ++T++fE+c  s      +  +e a+L+L +l++  +  ++ ++  +va++  +fg+ 
    KOO23726.1 302 RWVRLAAVAVDAGYTPLFEFCPASS----RPSGPEAATLILSALRHRRSgVYMPYA--RVAHLGARFGVP 365
                   99*******************9943....355678999999999998886666666..888888888854 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (418 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       535  (0.0298399); expected 358.6 (0.02)
Passed bias filter:                      410  (0.022868); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.23s 00:00:00.72 Elapsed: 00:00:00.38
# Mc/sec: 3262.52
//
Query:       KOO23727.1  [L=374]
Description: sphingolipid desaturase-like protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    6.1e-32  111.5  24.2    8.6e-32  111.0  24.2    1.2  1  FA_desaturase  Fatty acid desaturase


Domain annotation for each model (and alignments):
>> FA_desaturase  Fatty acid desaturase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  111.0  24.2   4.8e-36   8.6e-32       6     252 ..      51     346 ..      44     348 .. 0.85

  Alignments for each domain:
  == domain 1  score: 111.0 bits;  conditional E-value: 4.8e-36
  FA_desaturase   6 lllalllglfllgitg.slaHeaaHgalfkkrklnrwlndllgallglplgisysawrisH.lrHHaytngpdeDpdlaplal..........srf 89 
                    +l   ++ l+  ++++ +++H+aaH+ ++    + + +n++l  ++++ + +++ +w+++H  +HH +tn+pd+Dpdl+++ +          +++
     KOO23727.1  51 AL--PWYVLC--AWHVaGIGHDAAHFEVS----TEPVVNAVL--ACCIGTISNPLHWYYQHtVGHHSHTNDPDKDPDLHHYDPflrvhtrlahQPW 136
                    22..344444..44444********9999....99*******..455555569******************************************* PP

  FA_desaturase  90 eglfryllrlllgllvlg......wllalvlgl...wlrrlarrrapsksrrrkwrllawlllllawlglwlalllllglall..lwlvplllllf 174
                    +++ +y++  ++ l+ +g      +    + +l    +  +++++  +++r r ++l + +lll ++l l+l+l++ ++l+ +  ++ ++l   + 
     KOO23727.1 137 HRWQHYFVFPFMALFTFGqtlwqpL---MQQALpgqPRAVNGITPILMQGRLRVHVLGYGMLLLYVYLHLLLPLAFHPSLLSAaaFFSIFLGGTGG 229
                    ******9999999999999774322...22222222555555666666666666999999999998999999999988887778888888888888 PP

  FA_desaturase 175 llalvlnyveHyg........................................gdwgerqvetsasirsaswllnlltgnlnyHieHHlfPgvpwy 230
                    ++ l    ++H                                          ++w+ rq++ s+++   s+l  +l+  lny++eHHlfPg+ + 
     KOO23727.1 230 AFGLA-SAINHLTpasaaveptpqrlpsspntngagaggrlggigggsrqlqqHSWAARQAVSSNNFCLGSPLAFWLSNALNYQVEHHLFPGINHE 324
                    88888.9*************************************************************999999999******************* PP

  FA_desaturase 231 rLpelhrrlrellpehglpyrs 252
                    +Lp +++++r+++ e g+py+ 
     KOO23727.1 325 HLPMISPIVRATCTEFGVPYNA 346
                    ********************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (374 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       410  (0.022868); expected 358.6 (0.02)
Passed bias filter:                      273  (0.0152267); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.23s 00:00:00.69 Elapsed: 00:00:00.40
# Mc/sec: 2793.50
//
Query:       KOO23728.1  [L=586]
Description: cyclopropane-fatty-acyl-phospholipid synthase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
      3e-18   66.4   1.6    1.3e-14   54.4   0.0    2.8  2  Amino_oxidase  Flavin containing amine oxidoreductase
    1.8e-14   53.7   0.1    4.9e-14   52.3   0.1    1.8  1  NAD_binding_8  NAD(P)-binding Rossmann-like domain
    2.8e-06   26.7   3.0    6.8e-06   25.4   0.3    2.6  3  FAD_binding_2  FAD binding domain
     0.0001   21.8   0.1    0.00017   21.1   0.1    1.3  1  FAD_oxidored   FAD dependent oxidoreductase
    0.00017   21.3   0.4    0.00017   21.3   0.4    2.3  3  DAO            FAD dependent oxidoreductase
    0.00033   20.0   0.1    0.00088   18.6   0.1    1.7  2  Pyr_redox_2    Pyridine nucleotide-disulphide oxidoreductase
     0.0005   19.4   0.1     0.0013   18.1   0.1    1.6  1  Thi4           Thi4 family
    0.00052   20.0   0.0     0.0036   17.3   0.0    2.2  2  NAD_binding_9  FAD-NAD(P)-binding
    0.00067   19.0   0.1       0.13   11.5   0.1    2.2  2  Pyr_redox_3    Pyridine nucleotide-disulphide oxidoreductase
      0.004   17.7   0.2      0.011   16.3   0.2    1.7  1  Pyr_redox      Pyridine nucleotide-disulphide oxidoreductase
     0.0076   15.0   0.2      0.012   14.3   0.2    1.3  1  HI0933_like    HI0933-like protein
  ------ inclusion threshold ------
      0.012   14.9   0.1      0.019   14.2   0.1    1.3  1  FAD_binding_3  FAD binding domain
      0.038   13.3   0.0      0.082   12.2   0.0    1.5  1  AlaDh_PNT_C    Alanine dehydrogenase/PNT, C-terminal domain
      0.043   12.9   0.5       0.08   12.0   0.5    1.4  1  GIDA           Glucose inhibited division protein A
      0.094   11.5   0.0       0.21   10.3   0.0    1.5  2  MCRA           MCRA family


Domain annotation for each model (and alignments):
>> Amino_oxidase  Flavin containing amine oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.4   0.0   1.1e-17   1.3e-14       2     269 ..      18     279 ..      17     296 .. 0.68
   2 !    9.2   0.4   0.00055      0.66     375     450 ..     359     424 ..     317     426 .. 0.72

  Alignments for each domain:
  == domain 1  score: 54.4 bits;  conditional E-value: 1.1e-17
                    HHHHHHHHHHHTTEEEEEEESSSSSBTTS-EEEETTEEEESS--EEET.TTHHHHHHHHHTTCCCCEEEESCC..GCEEEEETTEECCTTEECHH. CS
  Amino_oxidase   2 aGLaaArqLlsaGfdVtvlEardrvGGRirtvrsdGylielGamwftg.agnpllellkelgledslslpdpg..apkrvlskggrefpgdlspv. 93 
                    +GLaaA+ L++ G+d+ v+E + +vGG+++t + + +++++G+m+++  +++ +l+ +++ g+  + s ++ +   ++ +++ g +   g++    
     KOO23728.1  18 SGLAAAYALHRSGHDIKVFEKDAHVGGHAHTQYVGKVPVDTGFMVCNHvTYPTMLKWFEDEGVAIQASDMSLSvsLEDGAWEWGSEGLGGLFATKt 113
                    9***********************************************************888877762222211333333333333344444444 PP

                    HHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHTSTTTTCBHHHHT CS
  Amino_oxidase  94 paewealleqgalsaellsleeklrlgleallqktldeldldskslaesleelgrrepgdvevwdrliepelfaklefasglfagdpselsaklal 189
                    +++ +a+l+          l e+  ++ +a++  +l   ++++k++     +l +++ +  + ++r++ p        +  ++    s   a+++ 
     KOO23728.1 114 NMASPAFLR---------MLREMTTFKADAEA--FL-ASPPADKNSVSLGDFLREKRYST-YFVERYLVP-------ACASIW----SVPAARVTE 185
                    444444444.........22222222222222..22.34455555555555555555555.778888887.......777775....444555555 PP

                    CCCCHHHHHTSCCCEE...............TTHTHHHHHHHHHTTTTEEEETSEEEEEEEEETTCEEEEETTSTEE...EESEEEE-S-HHHHHS CS
  Amino_oxidase 190 pllwelegfggslllp...............rgGlsqlpealaeelrgldirlntrVkeikregdgvtvtledgevv...eaDaVvvTvplgvlka 267
                       ++  +f +++ ++                +G+   +  +++ + +++i ++++V+ +++ ++g ++t+++ + +   ++D+++ ++  + +k+
     KOO23728.1 186 SPAYFILEFMANHHMLqvfnrpqwytvrgrsADGY---IAKVTA-AFKNKIVTSAEVTGVSKLASGWKLTIKTPDAIldeTFDQIIFACHAPDAKT 277
                    55555555555555555556888888766554443...333333.4557*************99999999999999999************99996 PP

                    SE CS
  Amino_oxidase 268 il 269
                    i+
     KOO23728.1 278 IM 279
                    65 PP

  == domain 2  score: 9.2 bits;  conditional E-value: 0.00055
                    GTSSTCSEEEEEECCTETTTSSSEEE.BTTHHHHHHHHHHCHHCSTTEEE.SGGGCTTTTTSHHHHHHHHHHHHHH CS
  Amino_oxidase 375 eevpepkatlvtrWhtdplargsysyvsvgpghedydplakpegdprlffAGehtsreypgtvegAilSGlraAar 450
                    ++ p   +++v+ W+  +++      v+ ++++++  + a+ +g  ++ fAG++     +g  e+  ++G +aA+ 
     KOO23728.1 359 PAKPPAAEHVVSAWR-TSHP------VPSMASRNAAANAAAVQGERGVWFAGAYLG---YGFHEDGTQAGFNAADM 424
                    45566667******9.7777......46666677777777777***********99...699************86 PP

>> NAD_binding_8  NAD(P)-binding Rossmann-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.3   0.1   4.1e-17   4.9e-14       1      65 [.      12      75 ..      12      77 .. 0.92

  Alignments for each domain:
  == domain 1  score: 52.3 bits;  conditional E-value: 4.1e-17
                   EE--SHHHHHHHHHHHCCTEEEEEE-SSSSSSGGG-EECETTCEECTS---EEETTHHHHCHHHH CS
  NAD_binding_8  1 IvGaGlsGlvaAylLakagfdvlllekrdrlGGraasyevpgvrvdygahifhgsgyypnvrrll 65
                   IvG+G sGl+aAy+L++ g+d+ ++ek  ++GG+a++  v++v+vd+g  + + +  yp + +++
     KOO23728.1 12 IVGSGCSGLAAAYALHRSGHDIKVFEKDAHVGGHAHTQYVGKVPVDTGFMVCNHVT-YPTMLKWF 75
                   9***********************************************99998874.77776666 PP

>> FAD_binding_2  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.4   0.3   5.7e-09   6.8e-06       2      39 ..      10      47 ..       9      50 .. 0.95
   2 ?   -0.1   0.0      0.31   3.7e+02      89     130 ..      68     118 ..      61     159 .. 0.72
   3 ?   -1.1   0.1      0.62   7.4e+02      75     155 ..     372     503 ..     365     524 .. 0.52

  Alignments for each domain:
  == domain 1  score: 25.4 bits;  conditional E-value: 5.7e-09
                   EEEE--SHHHHHHHHHHHHTTT-EEEEESSSGGGSGGG CS
  FAD_binding_2  2 viViGsGlAGLaAAleaaeaGlkvavvekeqefggata 39
                   v ++GsG +GLaAA+++++ G+++ v ek   +gg+++
     KOO23728.1 10 VAIVGSGCSGLAAAYALHRSGHDIKVFEKDAHVGGHAH 47
                   89*********************************987 PP

  == domain 2  score: -0.1 bits;  conditional E-value: 0.31
                    HHHHHHHHHHTT----B........CCTS..SB-EEE-TT-SSTEEEE-.ST CS
  FAD_binding_2  89 apeavdeLeelgvpfsr........tedg..pvdvrelGglsatartlhdaa 130
                     p +++++e+ gv ++          edg  +++   lGgl at +t +  +
     KOO23728.1  68 YPTMLKWFEDEGVAIQAsdmslsvsLEDGawEWGSEGLGGLFAT-KTNMASP 118
                    58899******9999996666666655558899999999*9999.4444232 PP

  == domain 3  score: -1.1 bits;  conditional E-value: 0.62
                    T-S-HHHHHHHHHTHHHHHHHHHHT.T----B.......CCTS........SB-EEE-TT-SST................................ CS
  FAD_binding_2  75 eladqplveafveaapeavdeLeel.gvpfsr.......tedg........pvdvrelGglsat................................ 122
                    ++  +p+  +  ++a++  +  +   gv+f +       +edg         + ++ lG+++a+                                
     KOO23728.1 372 WRTSHPVPSMASRNAAANAAAVQGErGVWFAGaylgygfHEDGtqagfnaaDMLLKALGDTTARkfplpvvrvpaavkaaaaakaaalgkalehav 467
                    555555555555544444444444446666665555555222233335555666666666666666666655555555555555555555555555 PP

                    ......EEEE-.STT-........HHHHHHHHHHHHHHTCT CS
  FAD_binding_2 123 ......artlhdaadarr..etlvtghallarlvesarkag 155
                          a     +a +    ++++tg + + + ++++++a+
     KOO23728.1 468 tdssavA-----VASPGLlsRAVATGAGYMLTAMNGLLRAQ 503
                    5422211.....22222223344566666666666555555 PP

>> FAD_oxidored  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.1   0.1   1.4e-07   0.00017       2      44 ..      10      52 ..       9     101 .. 0.89

  Alignments for each domain:
  == domain 1  score: 21.1 bits;  conditional E-value: 1.4e-07
  FAD_oxidored  2 vvVvGGgpaGvaAAiaAaraGakvlLveergvlGGlltsglva 44
                  v +vG+g +G+aAA+a  r+G    + e++ ++GG +  + v+
    KOO23728.1 10 VAIVGSGCSGLAAAYALHRSGHDIKVFEKDAHVGGHAHTQYVG 52
                  89*********************************99888774 PP

>> DAO  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.3   0.4   1.4e-07   0.00017       1      36 [.       9      46 ..       9      57 .. 0.89
   2 ?   -1.1   0.1      0.93   1.1e+03      27      27 ..     274     274 ..     214     410 .. 0.62
   3 ?   -1.5   0.8       1.2   1.4e+03     127     127 ..     394     394 ..     274     520 .. 0.56

  Alignments for each domain:
  == domain 1  score: 21.3 bits;  conditional E-value: 1.4e-07
                EEEEECTSHHHHHHHHHHHHTT..EEEEESSSSTTSSG CS
         DAO  1 dvviiGGGiiGlstAyeLarrg..Vtllekgdiagsga 36
                +v+i+G+G  Gl++Ay+L r g  + ++ek+  +g +a
  KOO23728.1  9 RVAIVGSGCSGLAAAYALHRSGhdIKVFEKDAHVGGHA 46
                59****************98899********9999655 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 0.93
                 E CS
         DAO  27 e 27 
                 +
  KOO23728.1 274 D 274
                 1 PP

  == domain 3  score: -1.5 bits;  conditional E-value: 1.2
                 T CS
         DAO 127 a 127
                 +
  KOO23728.1 394 Q 394
                 1 PP

>> Pyr_redox_2  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.6   0.1   7.4e-07   0.00088       2      46 ..       9      51 ..       8      93 .. 0.79
   2 ?   -3.7   0.0       4.7   5.6e+03      58      90 ..     223     255 ..     187     270 .. 0.55

  Alignments for each domain:
  == domain 1  score: 18.6 bits;  conditional E-value: 7.4e-07
                 SEEEE--SHHHHHHHHHHHHHTS-EEEEETTHCHHHCSHHHHCHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2  2 dvvviGgGpAGlaaaltlaqagakvtlvelegtclnggcllskal 46
                 +v+++G+G  Glaaa  l ++g+++ ++  e+  + gg   ++ +
   KOO23728.1  9 RVAIVGSGCSGLAAAYALHRSGHDIKVF--EKDAHVGGHAHTQYV 51
                 79**************************..444455555555555 PP

  == domain 2  score: -3.7 bits;  conditional E-value: 4.7
                  HHHHCHHHHCCCCHCCT.CEEEEESCEEEEETEE CS
                  xxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxx RF
  Pyr_redox_2  58 evvkklnqgielllgee.vvkidpgkkkvklekk 90 
                  +v+  ++++i + ++++ v k+  g+ k+++++ 
   KOO23728.1 223 KVTAAFKNKIVTSAEVTgVSKLASGW-KLTIKTP 255
                  55555666666566655455555666.5555433 PP

>> Thi4  Thi4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.1   0.1     1e-06    0.0013      20      56 ..      10      45 ..       5      52 .. 0.90

  Alignments for each domain:
  == domain 1  score: 18.1 bits;  conditional E-value: 1e-06
                EEEE--SHHHHHHHHHHHHCTTS-EEEEESSSS--TT CS
        Thi4 20 vvivGaGssGLtaayylakkpdlkvailersvspGGG 56
                v+ivG+G sGL+aay l ++ +  + ++e+   +GG 
  KOO23728.1 10 VAIVGSGCSGLAAAYALHRS-GHDIKVFEKDAHVGGH 45
                89*****************9.8899999*99999996 PP

>> NAD_binding_9  FAD-NAD(P)-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   0.0     3e-06    0.0036       1      76 [.      11      78 ..      11      93 .. 0.77
   2 ?   -0.6   0.0         1   1.2e+03     119     153 ..     233     270 ..     216     271 .. 0.65

  Alignments for each domain:
  == domain 1  score: 17.3 bits;  conditional E-value: 3e-06
  NAD_binding_9  1 aivGaGprGlavlerLlarakkkspleitlfdpsep.gagrvwrtdqseelllNvpasemslftddpptfaeWlrer 76
                   aivG G++Gla++ +L ++      ++i++f+++ + g g+++ +       + v ++ m   +   pt+ +W +++
     KOO23728.1 11 AIVGSGCSGLAAAYALHRS-----GHDIKVFEKDAHvG-GHAHTQY---VGKVPVDTGFMVCNHVTYPTMLKWFEDE 78
                   8****************99.....59*******76625.6666554...4556677777777777777777777666 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 1
  NAD_binding_9 119 vhraevvdleeradgqavlladgas...laadaVvLAl 153
                    v +aev+ +++ a+g++++ ++ +     ++d+++ A+
     KOO23728.1 233 VTSAEVTGVSKLASGWKLTIKTPDAildETFDQIIFAC 270
                    4578***********97766544331225889888876 PP

>> Pyr_redox_3  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.5   0.1   0.00011      0.13       2      33 ..      12      42 ..       8      59 .. 0.82
   2 !    5.2   0.0    0.0089        11      77     117 ..     211     251 ..     188     296 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.00011
  Pyr_redox_3  2 IiGaGPaGlaaaielkkagledylilEkgnig 33
                 I+G G  Glaaa++l ++g  d+ + Ek++++
   KOO23728.1 12 IVGSGCSGLAAAYALHRSGH-DIKVFEKDAHV 42
                 89999999999999999998.78899988665 PP

  == domain 2  score: 5.2 bits;  conditional E-value: 0.0089
  Pyr_redox_3  77 klsrkealeYlrevaksfelpiklfeeVesvkkedegfeve 117
                   ++++ a  Y ++v++ f+ +i +  eV+ v+k ++g +++
   KOO23728.1 211 TVRGRSADGYIAKVTAAFKNKIVTSAEVTGVSKLASGWKLT 251
                  567888899************************88876554 PP

>> Pyr_redox  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.2   8.8e-06     0.011       1      35 [.       9      43 ..       9      54 .. 0.89

  Alignments for each domain:
  == domain 1  score: 16.3 bits;  conditional E-value: 8.8e-06
                EEEEECSSHHHHHHHHHHHHTTSEEEEEESSSSSS CS
   Pyr_redox  1 kvvvvGgGyiglElAgalaelgkkVtvversdkll 35
                +v++vG+G +gl +A al++ g++++v+e   ++ 
  KOO23728.1  9 RVAIVGSGCSGLAAAYALHRSGHDIKVFEKDAHVG 43
                79***************************988776 PP

>> HI0933_like  HI0933-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.3   0.2     1e-05     0.012       2      36 ..       9      43 ..       8      53 .. 0.94

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 1e-05
                 SEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSS- CS
  HI0933_like  2 dviviGgGaAGlmaAisaakrgkrVlllekakklg 36
                 +v+++G G +Gl aA ++++ g+++ ++ek  ++g
   KOO23728.1  9 RVAIVGSGCSGLAAAYALHRSGHDIKVFEKDAHVG 43
                 699***************************99887 PP

>> FAD_binding_3  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   0.1   1.6e-05     0.019       2      34 ..       8      40 ..       7      52 .. 0.89

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 1.6e-05
                   EEEEEE--SHHHHHHHHHHHHTTHHEEEEESSS CS
  FAD_binding_3  2 tdVlIVGaGpaGlmlallLseaGvrvvlvekrs 34
                   + V+IVG+G +Gl +a  L++ G +  + ek +
     KOO23728.1  8 VRVAIVGSGCSGLAAAYALHRSGHDIKVFEKDA 40
                   579**********************99999976 PP

>> AlaDh_PNT_C  Alanine dehydrogenase/PNT, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   6.9e-05     0.082      27      65 ..       6      44 ..       2      92 .. 0.85

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 6.9e-05
                 ---EEEEESTSHHHHHHHHHHHHTT-EEEEEESSHHHHH CS
  AlaDh_PNT_C 27 epakvlviGgGvaGlqAiatakglgakVtvlDvrparle 65
                 +p +v ++G G  Gl+A+ + ++ g +++v+++++++  
   KOO23728.1  6 NPVRVAIVGSGCSGLAAAYALHRSGHDIKVFEKDAHVGG 44
                 5889****************************9987655 PP

>> GIDA  Glucose inhibited division protein A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.5   6.7e-05      0.08       2      29 ..      10      45 ..       9      65 .. 0.78

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 6.7e-05
                EEEE-SSHHHHHHHHHHHHTT--EEEE........E CS
        GIDA  2 viViGgGhAGceAAlaaarlGakvlLi........t 29
                v ++G G +G++AA+a+ r+G++++ +         
  KOO23728.1 10 VAIVGSGCSGLAAAYALHRSGHDIKVFekdahvggH 45
                89**********************999666666553 PP

>> MCRA  MCRA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.0   0.00017      0.21       5      47 ..      11      49 ..       8      77 .. 0.81
   2 ?   -3.9   0.0       3.5   4.2e+03     276     318 ..     525     564 ..     516     566 .. 0.70

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.00017
                EEE--SHHHHHHHHHHHHTT---GGGEEEE-SS---------- CS
        MCRA  5 ylvGsGiasLaaAvyLirdakvpgenihileelkvaggsldga 47
                 +vGsG ++LaaA+ L r    +g++i+++e+++++gg  +++
  KOO23728.1 11 AIVGSGCSGLAAAYALHR----SGHDIKVFEKDAHVGGHAHTQ 49
                59***********99966....578************998876 PP

  == domain 2  score: -3.9 bits;  conditional E-value: 3.5
                 TT-EE-BTTB------.---HHHHHHHHHHCC-GGG--THHHH CS
        MCRA 276 essslGdndtpakleekeadesweLWkklaakspkfGnPekFc 318
                 ++  +Gd+ +p k +   + +  ++W+++a ++ ++G Pe+++
  KOO23728.1 525 DTIVIGDTASPHKATI--IVKREDFWRRIALRA-DLGLPEAYF 564
                 5556677666555554..468889999999765.899999887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (586 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       455  (0.0253779); expected 358.6 (0.02)
Passed bias filter:                      340  (0.0189637); expected 358.6 (0.02)
Passed Vit filter:                        53  (0.0029561); expected 17.9 (0.001)
Passed Fwd filter:                        15  (0.000836633); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              15  [number of targets reported over threshold]
# CPU time: 0.61u 0.26s 00:00:00.87 Elapsed: 00:00:00.43
# Mc/sec: 4134.16
//
Query:       KOO23729.1  [L=353]
Description: cyclopropane-fatty-acyl-phospholipid synthase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.4e-75  253.4   0.2      3e-75  253.0   0.2    1.0  1  CMAS             Mycolic acid cyclopropane synthetase
    1.5e-09   38.4   0.1    4.7e-09   36.8   0.0    1.9  2  Methyltransf_25  Methyltransferase domain
    1.1e-07   31.8   0.0      2e-07   31.0   0.0    1.5  1  Methyltransf_23  Methyltransferase domain
    6.7e-05   23.6   0.0    0.00015   22.4   0.0    1.7  1  Methyltransf_12  Methyltransferase domain
     0.0054   16.5   0.1      0.016   15.0   0.1    1.6  2  PCMT             Protein-L-isoaspartate(D-aspartate) O-methyl
      0.007   16.2   0.0      0.014   15.2   0.0    1.5  1  Methyltransf_31  Methyltransferase domain
  ------ inclusion threshold ------
       0.03   13.9   0.0      0.051   13.1   0.0    1.4  1  MTS              Methyltransferase small domain
       0.11   11.5   0.0       0.18   10.9   0.0    1.2  1  RrnaAD           Ribosomal RNA adenine dimethylase


Domain annotation for each model (and alignments):
>> CMAS  Mycolic acid cyclopropane synthetase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  253.0   0.2   1.3e-78     3e-75       6     267 ..      25     292 ..      20     298 .. 0.96

  Alignments for each domain:
  == domain 1  score: 253.0 bits;  conditional E-value: 1.3e-78
                 XHHHHHHHHTS-HHHHCTTS-TT---S----SSTT--HHHHHHHHHHHHHTTTT--TT-EEEEES-TTSHHHHHHHHHH--EEEEEES-HHHHHHHHHH CS
        CMAS   6 evenikahYDlsndffalfldptmtYsCAyferddmtLeeAqlaKldlileklelkpGmtlLdiGcGWGslvrraverydvkvvglTlSkeqaklakkr 104
                 +++ni +hYDlsnd+f++fl ++m+YsCAy++++ ++L++Aq++Kldl++ kl+l++ +t+L+iG GWG+l +r ++  + k+vglTlS++q++ a+ r
  KOO23729.1  25 TATNIGNHYDLSNDMFKTFLSDDMSYSCAYWKHEGESLQQAQMNKLDLLISKLKLEKHHTVLEIGFGWGALSIRIAQLVGCKIVGLTLSHDQKAEAEMR 123
                 67899********************************************************************************************** PP

                 HHTS-SSS-EEEEES-GGG---.....--SEEEEES-GGGTSGGGHHHHHHHHHHHS-TT-EEEEEEEEE--HHHHHCTTCCCHHHHHHTSTTS---BH CS
        CMAS 105 vdeldlerkvevklldyedlde.....kvdrvvsvgafehvgkenydtffkklkkllkedGllllhtitslhkkelaerglklkfidkeiFPgGelpsi 198
                 v+++++ +  + +++dy+ ++e      +drvvs +++e+vg+e +++f+k++++l+ + G+ +++ it+++ +    r+ + +fi+ +iFPg + ps 
  KOO23729.1 124 VAKAGVCDLIQYHYTDYRTFHEssggrTFDRVVSCEMLEAVGHEYLPDFYKAVDELMAPHGIAVVQVITTPDDRYEDYRHSA-EFINVHIFPGACCPSF 221
                 **********************999999***********************************************9999977.**************** PP

                 HHHHH.HHHHTT-EEEEEEE-HHHHHHHHHHHHHHHHHTHHHHHHH.SHHHHHHHHHHHHHHHHHHHHTTS CS
        CMAS 199 eeiee.eiseagftvvdveslrahYakTLkaWaealqenkdeaial.vseevarmyelYLagcaeaFrkgy 267
                  ++++ ++++  +tv++v+++++hY+ TL +W+ ++++n++++++l +++ ++r +e+Y+++c+  F+ + 
  KOO23729.1 222 GALTAaCTAASSLTVEHVQNIGPHYVPTLAQWRRNFMANQEKLKKLgFDDAFIRKWEYYFHYCEVGFKLRV 292
                 ***995667789*******************************************************9776 PP

>> Methyltransf_25  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.0       2.4   5.4e+03      28      70 ..      34      75 ..      12      83 .. 0.62
   2 !   36.8   0.0   2.1e-12   4.7e-09       1      97 []      85     184 ..      85     184 .. 0.94

  Alignments for each domain:
  == domain 1  score: -1.8 bits;  conditional E-value: 2.4
                     ESSHHHHHHHHHHHHHTTTTEEEEESBCCGBSS.STTTEEEEEE CS
  Methyltransf_25 28 Diseemleaareraeeeglnvefvqgdaedlpf.edgsfDlvvs 70
                     D+s +m ++  +     ++++ + +++ e+l++ + ++ Dl +s
       KOO23729.1 34 DLSNDMFKTFLSDD--MSYSCAYWKHEGESLQQaQMNKLDLLIS 75
                     66666666655444..2336666666666665425557777766 PP

  == domain 2  score: 36.8 bits;  conditional E-value: 2.1e-12
                      EEEET-TTSHHHHHHHCTSTSSEEEEEESSHHHHHHHHHHHHHTTT..TEEEEESBCCGBSSSTT..TEEEEEEESTGGGSSHHHHHHHHHHHH CS
  Methyltransf_25   1 vLdlGcGtGrltlalakrlgkakvtgvDiseemleaareraeeegl..nvefvqgdaedlpfedg..sfDlvvssgalhhlsdedlekalkeia 90 
                      vL++G G G l++++a+ +g +k++g+ +s+++ ++a+ r++++g+   ++++  d +++++ +g  +fD vvs+ +l+ + +e l++++k + 
       KOO23729.1  85 VLEIGFGWGALSIRIAQLVG-CKIVGLTLSHDQKAEAEMRVAKAGVcdLIQYHYTDYRTFHESSGgrTFDRVVSCEMLEAVGHEYLPDFYKAVD 177
                      9******************8.************************999999********99755445*******988***************** PP

                      HHEEEEE CS
  Methyltransf_25  91 rvLkpgG 97 
                      +++ p G
       KOO23729.1 178 ELMAPHG 184
                      ***9998 PP

>> Methyltransf_23  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.0   0.0   8.8e-11     2e-07      13     128 ..      70     199 ..      54     242 .. 0.80

  Alignments for each domain:
  == domain 1  score: 31.0 bits;  conditional E-value: 8.8e-11
  Methyltransf_23  13 lerllpk..lraggrvLdiGcGtGillevl.rengfsvtgvDlspeaveiae.........kakkaqkdqfdeqeaaepqgkfdlIvlrevleh 94 
                      l+ l  k  l++   vL+iG G G l+  + +  g++++g  ls  + ++ae           ++++ + ++   ++   ++fd +v+ e+le 
       KOO23729.1  70 LDLLISKlkLEKHHTVLEIGFGWGALSIRIaQLVGCKIVGLTLSHDQKAEAEmrvakagvcDLIQYHYTDYRTFHESSGGRTFDRVVSCEMLEA 163
                      33344332378889**********9988884667***********999999999999999966666666666666678999************* PP

  Methyltransf_23  95 vpd..ppellrqiatllkpgGylllseplaslkedr 128
                      v +  +p   + + +l++p G +++++++ ++ + +
       KOO23729.1 164 VGHeyLPDFYKAVDELMAPHGIAVVQVITTPDDRYE 199
                      *9555**********************987764333 PP

>> Methyltransf_12  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.4   0.0   6.9e-08   0.00015       1      98 [.      86     185 ..      86     186 .. 0.91

  Alignments for each domain:
  == domain 1  score: 22.4 bits;  conditional E-value: 6.9e-08
  Methyltransf_12   1 LeiGcGtGsllralleklpdieytgvDispsaiedakeklakrennnnnnvelealdlldldgg.ssfDlvvasnvlhhl..kdirevldnirk 91 
                      LeiG G G+l+ ++++   +++++g+ +s ++ + a+ + ak +  +  ++++++   + +++g  +fD vv+++ l+++  + + ++ + + +
       KOO23729.1  86 LEIGFGWGALSIRIAQL-VGCKIVGLTLSHDQKAEAEMRVAKAGVCDLIQYHYTDYRTFHESSGgRTFDRVVSCEMLEAVghEYLPDFYKAVDE 178
                      8*************999.***************999999999998888888888888776666679**************************** PP

  Methyltransf_12  92 lLkpgGr 98 
                      l++p G+
       KOO23729.1 179 LMAPHGI 185
                      ****996 PP

>> PCMT  Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.1   7.1e-06     0.016      65     127 ..      73     133 ..      58     169 .. 0.85
   2 ?   -1.8   0.0      0.99   2.2e+03     100     148 ..     162     212 ..     147     220 .. 0.69

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 7.1e-06
                 HHHHTT--TT-EEEEES-TTSHHHHHHHHHHCTTCEEEEEESBHHHHHHHHHHHHHCTTCSEE CS
        PCMT  65 alellelkkgarvLevGsGsGyltavlarlvgekgrvvsierikelveeakrnlkkldlenvi 127
                 ++  l+l+k   vLe+G G G l+  +a+lvg k  +v++  +++  +ea+ ++ k ++ ++i
  KOO23729.1  73 LISKLKLEKHHTVLEIGFGWGALSIRIAQLVGCK--IVGLTLSHDQKAEAEMRVAKAGVCDLI 133
                 556689*************************965..599999999999999999999876543 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 0.99
                 EEEEEESBHHHHHHHHHHHHHCTTC..SEEEEES-GGGTTGGG-SEEEEEE CS
        PCMT 100 rvvsierikelveeakrnlkkldle..nvivvvgDGrkGyeekaPYdaihv 148
                  +v+ e+ ++++++  + +  ++++  +vi++  D ++ y + a +  +h+
  KOO23729.1 162 EAVGHEYLPDFYKAVDELMAPHGIAvvQVITTPDDRYEDYRHSAEFINVHI 212
                 678888888888888888888888855666666777888888887766554 PP

>> Methyltransf_31  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.0   6.1e-06     0.014       2     113 ..      80     192 ..      79     242 .. 0.83

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 6.1e-06
  Methyltransf_31   2 dkglrvlDlGCGtGeltfelaeelgpkaevvGiDiseeaielArenaqklgld.nveFeqgdieeleklledekfDlilsnevl..naladpdk 92 
                      +k+ +vl++G G G+l++++a+++g  +++vG+  s +    A+ + +k g+   ++ +  d  ++ ++   ++fD ++s e l       +++
       KOO23729.1  80 EKHHTVLEIGFGWGALSIRIAQLVG--CKIVGLTLSHDQKAEAEMRVAKAGVCdLIQYHYTDYRTFHESSGGRTFDRVVSCEMLeaVGHEYLPD 171
                      68889****************8875..9***********9999999999998646677777777766553449***********5544455799 PP

  Methyltransf_31  93 ileeiervlkpggilliedpr 113
                      +++ + +++ p+gi +++ + 
       KOO23729.1 172 FYKAVDELMAPHGIAVVQVIT 192
                      9999999*******9998766 PP

>> MTS  Methyltransferase small domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.0   2.3e-05     0.051      21      57 ..      71     107 ..      68     157 .. 0.79

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 2.3e-05
                 HHHHHHCHCCTCSEEEEET-TTSHHHHHHHHHTTC.E CS
         MTS  21 klLletlpkelsgkvlDlGcGaGvlgaalakespeae 57 
                 +lL+++l+ e++++vl +G G+G+l++ +a+      
  KOO23729.1  71 DLLISKLKLEKHHTVLEIGFGWGALSIRIAQLVGCKI 107
                 59********9*******************9876644 PP

>> RrnaAD  Ribosomal RNA adenine dimethylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0     8e-05      0.18      21      52 ..      72     103 ..      65     112 .. 0.85

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 8e-05
                 HHHHHH-GGTTSEEEEES-TTTCCHHHHHCC- CS
      RrnaAD  21 eIldklnleekltvleigpGkGilTeeLakra 52 
                   ++kl+le+  tvleig G G+l+ ++a+ +
  KOO23729.1  72 LLISKLKLEKHHTVLEIGFGWGALSIRIAQLV 103
                 56899********************9998766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (353 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       540  (0.0301188); expected 358.6 (0.02)
Passed bias filter:                      451  (0.0251548); expected 358.6 (0.02)
Passed Vit filter:                        56  (0.00312343); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.48u 0.28s 00:00:00.76 Elapsed: 00:00:00.42
# Mc/sec: 2532.60
//
Query:       KOO23730.1  [L=309]
Description: hypothetical protein Ctob_009955 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (309 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       334  (0.018629); expected 358.6 (0.02)
Passed bias filter:                      325  (0.0181271); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.44u 0.22s 00:00:00.66 Elapsed: 00:00:00.38
# Mc/sec: 2454.30
//
Query:       KOO23731.1  [L=173]
Description: hypothetical protein Ctob_009954 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (173 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       213  (0.0118802); expected 358.6 (0.02)
Passed bias filter:                      190  (0.0105974); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.21s 00:00:00.59 Elapsed: 00:00:00.37
# Mc/sec: 1405.57
//
Query:       KOO23732.1  [L=1371]
Description: poly ADP-ribose polymerase member 14-like protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.3e-18   66.0   0.0    3.6e-15   56.1   0.0    2.3  2  PARP       Poly(ADP-ribose) polymerase catalytic domain
    1.6e-16   60.4   0.2      4e-16   59.1   0.2    1.6  1  Macro      Macro domain
  ------ inclusion threshold ------
      0.055   13.9   0.0       0.13   12.7   0.0    1.6  1  NYN        NYN domain
       0.29   10.9   1.9       0.32   10.8   0.4    1.8  2  DUF3540    Protein of unknown function (DUF3540)
        1.8    7.9   8.4          5    6.5   8.4    1.7  1  CAP_N      Adenylate cyclase associated (CAP) N terminal
        3.9    7.5  11.3         13    5.9   8.2    2.8  3  PRIMA1     Proline-rich membrane anchor 1


Domain annotation for each model (and alignments):
>> PARP  Poly(ADP-ribose) polymerase catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.1   0.0   1.2e-18   3.6e-15       1     143 [.    1194    1345 ..    1194    1352 .. 0.84
   2 !    7.8   0.3   0.00076       2.3     175     194 ..    1351    1370 ..    1346    1371 .] 0.88

  Alignments for each domain:
  == domain 1  score: 56.1 bits;  conditional E-value: 1.2e-18
                  SHHHHHHHHHHHHTS-TTTT.EEEEEEEEEEEEETTHHHHCGCCGG..........SS-EEEEEEEE-GGGHHHHHHH-S--S-TTS-GGGSTTSSS CS
        PARP    1 seeykeiekylkktldstha.yklkileifrvqregeaerfqekkk..........lrnrrlLfHGsrltnvasilsqGLriappeapvtGymfGkG 86  
                  s ey+e+ + +    d ++   ++ +l ++rvq++    +++++kk          + n+  + HG+rl+   +i+s    +++++      mfG+G
  KOO23732.1 1194 SREYQEVCRRFMFRPDGSPPaFPNAVLSVERVQNPMAYASYDKWKKiiaakdrnngNPNELWMKHGTRLSDPKAIISGEVGLDFRYSAS--GMFGRG 1288
                  57888888777666555544499****************************9994444455555************9877667777766..8***** PP

                  EEEBSSHHHHHGGG--BSSS-EEEEEEEEEE--SEEEESS--TGCCGGTT-SEEEE- CS
        PARP   87 iYfAddaskSanYcktsekkgsglllLaeValGdikeltkadylekakkgkksvkgk 143 
                  +Y+A+da++Sa+ +  +e+   + +lL +Va G i e + +  l+k++ g++sv+g 
  KOO23732.1 1289 TYLAEDAAYSARGYAYKESPTVHKMLLVRVAAGTIIESQPNANLTKEPDGYDSVRGV 1345
                  ***********8777678888999**********8888888889**********996 PP

  == domain 2  score: 7.8 bits;  conditional E-value: 0.00076
                  -EEEESSGGGEEEEEEEEEE CS
        PARP  175 neyvvydkeqvrlkYLlevk 194 
                  +  +vy+++q+++ YL+++k
  KOO23732.1 1351 KAVIVYNVSQCYPAYLITYK 1370
                  5669*************996 PP

>> Macro  Macro domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.1   0.2   1.3e-19     4e-16       1     111 [.     857     974 ..     857     977 .. 0.93

  Alignments for each domain:
  == domain 1  score: 59.1 bits;  conditional E-value: 1.3e-19
                 EEEEETTSS-CSHHHHHHHHHHHHHHHHHHHHHHHH..HHS--TTSEEEEE-TTSS....SSEEEEEESE-TTTS.TSTTHHHHHHHHHHHHHHHHHHT CS
       Macro   1 VnAaNsrllggggvagaihraagkalkeeckelekk..qggcllGeavvtpaynlp....akyvihtvgplftss.kskeeeellakayknalelaeek 92 
                 VnAaN +l   gg+a+ai  a+g+a+++ec++   k  ++++  G a++t ++nl     +  v+h+ +p++ s   s ++ ++l++++++al+la+ek
  KOO23732.1 857 VNAANPYLHPAGGIAKAIGDAGGPAFTAECNASVAKlpGRQLAPGSALITGSGNLGttagITAVVHALAPICPSAgPSATDVANLKATMREALRLAAEK 955
                 9*****************************998887544559**************99999***********998899999****************** PP

                 T-SEEEEE-TTSSTTSBTH CS
       Macro  93 giksvafPaistGifgvpw 111
                 g+k +a+Pa++    g p+
  KOO23732.1 956 GTKILAVPALGGAATGAPV 974
                 **********999888886 PP

>> NYN  NYN domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   4.4e-05      0.13      74     131 ..     193     260 ..     162     270 .. 0.74

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 4.4e-05
         NYN  74 sgk.kavDvelavdalelaydnky........dtivLvsgDgDFaplveklr.ergkrVevlla.eeas 131
                 ++k +avD  +   ++ +++++k           i+++++D+DF++ v++ + + g++ +v+ a e +s
  KOO23732.1 193 GNKhGAVDQDIQKSMTNFVDEHKAdseefkaaTLIIIITSDRDFSYHVSRMQsQGGFNNIVIIAnE-DS 260
                 3444889999999999999888877766776556899***************77778777777643.33 PP

>> DUF3540  Protein of unknown function (DUF3540)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.4   0.00011      0.32      69     136 ..     362     429 ..     350     442 .. 0.89
   2 ?   -3.2   0.0       2.1   6.4e+03     107     127 ..     704     724 ..     673     750 .. 0.56

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00011
     DUF3540  69 dleleaeaGrlsleaakavalaaaeeldlaaerlkvsaekaevaveelsllgeeleakvekvrlvaks 136
                   +++++  +l l+aa+ v+ +a+ +l++ a++ + sa++ +va+e+++++++++ a++ +vr v+++
  KOO23732.1 362 RFTIHVALEELVLKAAEVVSSDADGALSAPAPSSEPSAAQVNVAAEKMRIFSQSACAEAVTVRGVSET 429
                 5677788889****************************************************999876 PP

  == domain 2  score: -3.2 bits;  conditional E-value: 2.1
     DUF3540 107 ekaevaveelsllgeeleakv 127
                 ++  ++++ ++++ e +eak+
  KOO23732.1 704 AETGLRLSGTRAMVEAAEAKW 724
                 222222222222222223322 PP

>> CAP_N  Adenylate cyclase associated (CAP) N terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.5   8.4    0.0017         5     236     264 ..     304     332 ..     285     344 .. 0.54

  Alignments for each domain:
  == domain 1  score: 6.5 bits;  conditional E-value: 0.0017
                 SC--XXXXXXX.....XXXXXXXX.....X CS
       CAP_N 236 aaaasaaaagg.pppPpPpPppasvfeees 264
                 a+ +  + +   pppPpPpPpp+ +f+++ 
  KOO23732.1 304 APGP-GSRSVTpPPPPPPPPPPSGLFKHKP 332
                 2222.2333331444555555666665554 PP

>> PRIMA1  Proline-rich membrane anchor 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.9   8.2    0.0043        13      24      45 ..     310     331 ..     294     346 .. 0.65
   2 ?   -3.3   0.0       2.9   8.6e+03       6      39 ..     544     577 ..     542     584 .. 0.77
   3 ?    1.1   0.0      0.13     4e+02      18      62 ..    1196    1241 ..    1186    1244 .. 0.64

  Alignments for each domain:
  == domain 1  score: 5.9 bits;  conditional E-value: 0.0043
      PRIMA1  24 rrypplpppppppppprllslt 45 
                 r+  p ppppppppp  l+  +
  KOO23732.1 310 RSVTPPPPPPPPPPPSGLFKHK 331
                 5556656666666655554443 PP

  == domain 2  score: -3.3 bits;  conditional E-value: 2.9
      PRIMA1   6 sktvaekvtescqeacqcrrypplpppppppppp 39 
                 sk +a++++++ ++ c  ++ p +   p    pp
  KOO23732.1 544 SKFTADTLEDKLERLCALKKDPRIRFFPYGGDPP 577
                 88899999*********99999875555444444 PP

  == domain 3  score: 1.1 bits;  conditional E-value: 0.13
      PRIMA1   18 qeacqcrrypplpppppppppprllslt.aaestvsplepwwselv 62  
                  + +  crr    p  +pp  p  +ls++ + ++++      w++++
  KOO23732.1 1196 EYQEVCRRFMFRPDGSPPAFPNAVLSVErVQNPMAYASYDKWKKII 1241
                  4455688888888888887777777766155555555556666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1371 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       392  (0.021864); expected 358.6 (0.02)
Passed bias filter:                      292  (0.0162865); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.78u 0.28s 00:00:01.06 Elapsed: 00:00:00.46
# Mc/sec: 9052.28
//
Query:       KOO23733.1  [L=194]
Description: hypothetical protein Ctob_009905 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (194 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       425  (0.0237046); expected 358.6 (0.02)
Passed bias filter:                      316  (0.0176251); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.42u 0.24s 00:00:00.65 Elapsed: 00:00:00.41
# Mc/sec: 1415.18
//
Query:       KOO23734.1  [L=178]
Description: hypothetical protein Ctob_009906 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    0.00083   19.4   0.0     0.0037   17.3   0.0    2.0  2  cNMP_binding  Cyclic nucleotide-binding domain


Domain annotation for each model (and alignments):
>> cNMP_binding  Cyclic nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   0.0   2.1e-07    0.0037      50      87 ..      22      59 ..       8      60 .. 0.92
   2 ?   -0.9   0.0     0.097   1.7e+03      44      58 ..     106     123 ..      87     145 .. 0.65

  Alignments for each domain:
  == domain 1  score: 17.3 bits;  conditional E-value: 2.1e-07
                  EESHHHHHHTS--SSEEEESSTEEEEEEEHHHHHHHHH CS
  cNMP_binding 50 lfGelalltgeprtatvvAltdsellalprddflellq 87
                  +fGel l+   pr+ t+++l +++ll+l+ ++f+e+l+
    KOO23734.1 22 WFGELQLFVRLPRHSTATVLQPARLLRLSPNHFEEFLE 59
                  7*******889************************986 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 0.097
                   EE-TTEEESHHHHH...H CS
  cNMP_binding  44 vlgpGdlfGelall...t 58 
                   v ++G+ +G+ a+l   +
    KOO23734.1 106 VWQSGARLGTNAVLgasG 123
                   557888888888885432 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (178 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       481  (0.026828); expected 358.6 (0.02)
Passed bias filter:                      355  (0.0198003); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.25s 00:00:00.64 Elapsed: 00:00:00.39
# Mc/sec: 1359.26
//
Query:       KOO23735.1  [L=521]
Description: splicing factor u2af 65 kda [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.8e-11   44.3   0.0    2.7e-11   43.7   0.0    1.2  1  APOBEC_N  APOBEC-like N-terminal domain
    2.9e-05   23.8   0.0      0.051   13.4   0.0    2.4  2  RRM_1     RNA recognition motif. (a.k.a. RRM, RBD, or RNP dom
     0.0036   17.4   0.0       0.22   11.7   0.0    2.9  2  APOBEC4   APOBEC4


Domain annotation for each model (and alignments):
>> APOBEC_N  APOBEC-like N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.7   0.0   4.5e-15   2.7e-11      33     149 ..     298     471 ..     270     499 .. 0.85

  Alignments for each domain:
  == domain 1  score: 43.7 bits;  conditional E-value: 4.5e-15
                 E..EEEEEEEE-..SSTBCHHHHHHHHHHHHT--...T....TEEEEEEEEESS-S-HH................................HHHHHHHH CS
    APOBEC_N  33 s..kkGvLrnqsgaaaskHaEelflediedqelre..p....kkkyeitlYvswsPChessde............................Caeklaaf 95 
                       ++r +s    + HaEe++l+d +  +l +       ++++ + lY+s++PCh+s                               C+e+l af
  KOO23735.1 298 VarYANCFRGRSEW--NVHAEEFMLADPQLLALLRggSdasgDRARILRLYMSYQPCHHSGGRlpeaktpedarkqlelaarrkdqghptsCSERLRAF 394
                 24567789999966..9**********9888766545267878888899**********7777***********************************9 PP

                 HHH-...TTEEEEEEESE-ST......................STSHHHHHH..HHHHHHT.TEEEEE--HHHHHHH CS
    APOBEC_N  96 lkke...knvelkifvsrlykak...................wwekpkeaekeglrllkqa.gveleimkekdfkyc 149
                 ++ e     ++l++ v+ lyka                    ++ ++ +a+++ l l ++a gv++++ +e+d+ y+
  KOO23735.1 395 YEAEmreHAISLELVVADLYKAMwtedlmierapddcvrssaYCADAASARQGILLLVANApGVTMRATDENDWAYL 471
                 988877799************98******************999999888887777777779***********9996 PP

>> RRM_1  RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.1   0.0    0.0004       2.4       1      20 [.      56      76 ..      56      85 .. 0.89
   2 !   13.4   0.0   8.5e-06     0.051      23      70 .]      91     136 ..      88     136 .. 0.87

  Alignments for each domain:
  == domain 1  score: 8.1 bits;  conditional E-value: 0.0004
                EEEESETTT.SSHHHHHHHHH CS
       RRM_1  1 lfVgnLppd.vteeeLkelFs 20
                l+VgnLp+  vte +L++lFs
  KOO23735.1 56 LYVGNLPTGlVTEPMLRQLFS 76
                8*****87648*********8 PP

  == domain 2  score: 13.4 bits;  conditional E-value: 8.5e-06
                 SCEEEEEEEEETTTSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE CS
       RRM_1  23 GpiksiklvrdetgkskgfafVeFeskedAekAlealngkklggrelk 70 
                  p+ ++++ +   +++  fafVeF ++   +     +ng++l gr lk
  KOO23735.1  91 PPVLNAQIRT-GGNSTSAFAFVEFRDEKISATVAT-FNGMELSGRHLK 136
                 5899999999.599************988777776.9*****999875 PP

>> APOBEC4  APOBEC4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.5   0.0     0.055   3.3e+02       3      12 ..     345     354 ..     343     363 .. 0.87
   2 !   11.7   0.0   3.6e-05      0.22      12      69 ..     386     471 ..     381     475 .. 0.89

  Alignments for each domain:
  == domain 1  score: 1.5 bits;  conditional E-value: 0.055
     APOBEC4   3 lylsysPCne 12 
                 ly+sy PC+ 
  KOO23735.1 345 LYMSYQPCHH 354
                 8*******86 PP

  == domain 2  score: 11.7 bits;  conditional E-value: 3.6e-05
     APOBEC4  12 eCaekileFl...kkhpkvnldiyfaqlyhte.......................aednregLrkLvekg..vtlkvlsiedylyl 69 
                  C+e +  F     ++ +++l++ +a ly+                         a++ r+g   Lv+ +  vt+++ + +d+ yl
  KOO23735.1 386 SCSERLRAFYeaeMREHAISLELVVADLYKAMwtedlmierapddcvrssaycadAASARQGILLLVANApgVTMRATDENDWAYL 471
                 599999999965445569***********9888899****************9999***********99899***********998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (521 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       384  (0.0214178); expected 358.6 (0.02)
Passed bias filter:                      331  (0.0184617); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.49u 0.25s 00:00:00.74 Elapsed: 00:00:00.39
# Mc/sec: 4043.35
//
Query:       KOO23736.1  [L=1316]
Description: activating signal cointegrator 1 complex subunit 3 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
   7.3e-112  372.7   0.0      5e-64  215.9   0.0    2.2  2  Sec63       Sec63 Brl domain
    2.8e-32  111.9   0.0    2.9e-20   72.8   0.0    2.8  3  DEAD        DEAD/DEAH box helicase
    3.5e-13   49.9   0.0    7.7e-09   35.8   0.0    2.4  2  ResIII      Type III restriction enzyme, res subunit
    5.8e-11   42.7   0.0    3.7e-05   24.0   0.0    3.7  3  Helicase_C  Helicase conserved C-terminal domain
    9.1e-06   26.0   0.0     0.0016   18.8   0.0    2.7  2  AAA_22      AAA domain
     0.0031   16.6   0.0     0.0068   15.5   0.0    1.5  1  T2SSE       Type II/IV secretion system protein


Domain annotation for each model (and alignments):
>> Sec63  Sec63 Brl domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  215.9   0.0   1.7e-67     5e-64       1     255 [.     410     675 ..     410     677 .. 0.88
   2 !  154.7   0.0   8.2e-49   2.4e-45      48     256 ..    1044    1310 ..    1041    1311 .. 0.92

  Alignments for each domain:
  == domain 1  score: 215.9 bits;  conditional E-value: 1.7e-67
                 ECHHHHHHHHHT--HHHHHHHHHHS-TT--HHHHHHHHHTSGGGGGS---TTHHHHHHHHHHTSSS--SSSTTSHHHHHHHHHHHHHTT---SSHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       Sec63   1 ptelGriaShYyisyetiklfneslkpnttlkdlLeilssasEFeeipvReeEkkelkkLlekvpikvkediespeaKvniLlqayisrlklegsdlvs 99 
                 ptelGr +Sh+y+s +t+++fne+l+p+++++++L+ l+sa+EF++i+vReeE +el++Ll+++p++vk+ + s+e K+ +L+qayi+ l+++ ++lvs
  KOO23736.1 410 PTELGRTSSHFYLSVDTVETFNEMLSPTSNEAEILHTLCSAAEFSQIKVREEEMEELEALLDQAPLNVKGGLASKEGKTCVLMQAYIGGLPVKAFALVS 508
                 89************************************************************************************************* PP

                 HHHHHHHHHHHHHHHHHHHHHHTTBHHHHHHHHHHHHHHHHTS-TT..............S--EEE.EEEECEBTTSEEE.EEEEEEESSSS-SCTSSS CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..............xxxxxx.xxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxx RF
       Sec63 100 DlkyilqnairilralveillskgwlslalslleLskmveqrlwds..............lPklei.eaevqpitrsklr.vevtiereeeeskpdfpw 182
                 D ++i+q+a ri+r l+ei+l++gwls a ++l++skm+eqr w +              + kle  +a+v+ + + +++ +   i+ ++ ++ p  + 
  KOO23736.1 509 DCTFIAQSAARIARGLFEITLARGWLSYAEKVLRISKMLEQRAWAFrhplrqlgnlpfeiYDKLEAkRASVDTLRDLDVKeIGALIS-NM-KQGPAIKA 605
                 ********************************************999*****99977777777777777776666555553555555.22.22233333 PP

                 -CHTSBEEEEEEEEETTTTEEEEEEEEEESSTTTTTEEEEEEEEEEE-.SSCCEEEEEEEEESSSSS-EEEEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       Sec63 183 dkkgksekfwlvvedsendellaikrvtlekkklastqevkleftvplsepgpkqltvrlisdswlgldqevt 255
                 +   +    ++ ved+en+++++ + +tl+k   ++ ++++l ft+pl ep+p++++vr+is +wlg+++ v+
  KOO23736.1 606 EA-RQLPLLLVDVEDTENEHIYHKELFTLTKM--KKDEPHTLAFTIPLFEPLPPCYFVRAISNRWLGVETIVP 675
                 33.34455555699***************874..4458******************************99776 PP

  == domain 2  score: 154.7 bits;  conditional E-value: 8.2e-49
                  ---TTHHHHHHHHHHTSSS--S.SSTTSHHHHHHHHHHHHHTT---SSHHHHHHHHHHHHHHHHHHHHHHHHHHHTTBHHHHHHHHHHHHHHHHTS- CS
                  xxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       Sec63   48 pvReeEkkelkkLlekvpikvk.ediespeaKvniLlqayisrlklegsdlvsDlkyilqnairilralveillskgwlslalslleLskmveqrlw 143 
                  +vR++E++  +++  ++p++v+ ++++sp++K+ +Llqa+++r++l++sd+v+D+k++l++a+r+l+a+v+i+++ gwl ++ls+++L +mv+q++ 
  KOO23736.1 1044 QVRHNEEHVHAQMSTELPWRVDqSALDSPHVKAQLLLQAHFARTPLPMSDYVTDTKSVLDQAMRVLQAMVDIAADGGWLDTTLSVMHLVQMVTQARF 1140
                  79*******************889************************************************************************* PP

                  TT...........................................................S--EEEEEEE.....CEBTTSEEEEEEEEEESSS.S CS
                  xx...........................................................xxxxxxxxxx.....xxxxxxxxxxxxxxxxxxx.x RF
       Sec63  144 ds...........................................................lPkleieaev.....qpitrsklrvevtiereee.e 175 
                   +                                                           lP+l+++ae+      p  +s+++v+++ +++ +  
  KOO23736.1 1141 LDdspftdlphvdekveaalrakgitdlatlarlpieklrqllggvlrerpigelaevlraLPTLTLRAEAphtalAPGEESVVKVHMEATQRGHrR 1237
                  6669******************************************************************999966666666666666666333343 PP

                  -S..CTSSS-CHTSBEEEEEEEEETTTTEEEEEEEEEESSTTTTTEEEEEEEEEEE-.SSCCEEEEEEEEESSSSS-EEEEEE CS
                  xx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       Sec63  176 sk..pdfpwdkkgksekfwlvvedsendellaikrvtlekkklastqevkleftvplsepgpkqltvrlisdswlgldqevti 256 
                  ++  p+fp+ k     ++wlv ++ +  el+a+kr++l +       + +l f + + epg++ ++vrl+sds++gld ev++
  KOO23736.1 1238 HAfaPRFPKPK---LAGWWLVMGEAD--ELFALKRIHLDRG----ALTSELHFAA-PDEPGEYLYSVRLVSDSYIGLDGEVQV 1310
                  3389*******...*********777..6*********886....67789*****.79********************99986 PP

>> DEAD  DEAD/DEAH box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.9   0.0     2e-12   5.9e-09      51     140 ..       2      88 ..       1      93 [. 0.82
   2 ?   -3.2   0.0         2   5.9e+03     159     169 ..     235     243 ..     220     246 .. 0.80
   3 !   72.8   0.0   9.8e-24   2.9e-20       2     149 ..     720     864 ..     719     883 .. 0.85

  Alignments for each domain:
  == domain 1  score: 35.9 bits;  conditional E-value: 2e-12
                 EEEESSHHHHHHHHHHHHHHTTTSTSEEEEEETTSSHHHHHHHHHTTCSEEEEEHHHHHHHHHCTS.SHCTTEEEEEEETHHHHHHTTTHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD  51 livePtreLaeqtlnnlkkfkkyidlrvlliiggvaardqlskldngvdivvgtpgrlddllstgk.lnlsqvrflVlDEadrlldqgfsd 140
                 ++++P+++La++ + +++k++ +++l+v   ++g+ +   ++++ ++++++v+tp+++d ++++g+   +s v +l++DE++ l d+ +++
  KOO23736.1   2 IYIAPMKALAQELVGKFSKSLGQLGLQVRE-YTGDMQ-LTKREI-ASTHLIVTTPEKWDVVTRKGSdALVSAVGLLIIDEVHLLNDD-RGP 88 
                 89***********************99985.555544.455666.78************9885555244**************9997.555 PP

  == domain 2  score: -3.2 bits;  conditional E-value: 2
                 TSEEEEEESSB CS
                 xxxxxxxxxxx RF
        DEAD 159 qrqvivlSATl 169
                 +  v+v++ATl
  KOO23736.1 235 N--VLVCTATL 243
                 4..9******8 PP

  == domain 3  score: 72.8 bits;  conditional E-value: 9.8e-24
                 HHHHHHHHHHH.TTCEEEEEESTTSSHHHHHHHHHHHHHHHSTTSTS-EEEEEESSHHHHHHHHHHH.HHHTTTSTSEEEEEETTSSHHHHHHHHHTTC CS
                 xxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD   2 diQaeaiplil.gggdvlvaaeTGsGKTlaflipvlqivyetkgktgpkalivePtreLaeqtlnnl.kkfkkyidlrvlliiggvaardqlskldngv 98 
                 +iQ ++++++  +++++lv  +TGsGKT  + ++vl+ +   +  +g ka++++P+++L+++ l+++ +kf k ++l+++  ++g++a  + ++l +++
  KOO23736.1 720 PIQTQVFHTVFhTDQNILVGSPTGSGKTVTAELAVLRLL---RAHPGMKAVYIAPLKALVRERLDDWtTKFVKRLGLSLQE-LTGDSA-PDARAL-ATA 812
                 8********995668*********************888...69*********************9846777779988874.566677.456677.79* PP

                 SEEEEEHHHHHHHH....HCTSSHCTTEEEEEEETHHHHHHTTTHHHHHHHHHHS CS
                 xxxxxxxxxxxxxx....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD  99 divvgtpgrlddll....stgklnlsqvrflVlDEadrlldqgfsdfinrilnql 149
                 di+ +tp+++d +     ++g+  ++qv ++++DE++ l ++ +++ +++ l++l
  KOO23736.1 813 DILATTPEKWDGVSrhwqQRGY--VRQVGLVIIDEIHLLGED-RGPILETRLTAL 864
                 ***********98888655555..*************99997.999998877777 PP

>> ResIII  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.7   0.0   6.7e-05       0.2      58     147 ..       2      85 ..       1     114 [. 0.88
   2 !   35.8   0.0   2.6e-12   7.7e-09       8     147 ..     722     852 ..     704     875 .. 0.85

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 6.7e-05
                 EEEESSHHHHHHHHHHGGGGTGG....GEEEESSS-B--.......-SEEEEEHHHHHHTH........HHHTTT-SEEEEETGGGTTS. CS
      ResIII  58 lflvprkslleqtleefkkflseaykeigkkvsgdkkkakekdstnkkilvttiqsldadseeeeeeseellrdrfdviiiDEaHrlgak 147
                 + ++p k+l + +  +f+k l +    +  +++gd +   ++++ +++++vtt ++ d       ++  ++l ++  ++iiDE+H l+++
  KOO23736.1   2 IYIAPMKALAQELVGKFSKSLGQLGL-QVREYTGDMQLT-KREIASTHLIVTTPEKWDVVT----RKGSDALVSAVGLLIIDEVHLLNDD 85 
                 56899999999999999999998765.888999999999.99******************9....88999999999*********99884 PP

  == domain 2  score: 35.8 bits;  conditional E-value: 2.6e-12
                 HHHHHHHHT......TTSEEEEEESTTSTHHHHHHHHHHHH-S.....-EEEEESSHHHHHHHHHHGGGGTGG....GEEEESSS-B--.......-SE CS
      ResIII   8 QeeaienlleklkskrdkrglikmaTGtGKTlvaaklierllkkgkeekflflvprkslleqtleefkkflseaykeigkkvsgdkkkakekdstnkki 106
                 Q+++   +      + d+++l+  +TG+GKT++a  ++ rll++++  k++ ++p k+l+   l++++  + +      ++++gd+    +++  +++i
  KOO23736.1 722 QTQVFHTVF-----HTDQNILVGSPTGSGKTVTAELAVLRLLRAHPGMKAVYIAPLKALVRERLDDWTTKFVKRLGLSLQELTGDSAPD-ARALATADI 814
                 444444443.....7899****************9999999999999***************999998888777655888899999999.9999***** PP

                 EEEEHHHHHHTH........HHHTTT-SEEEEETGGGTTS. CS
      ResIII 107 lvttiqsldadseeeeeeseellrdrfdviiiDEaHrlgak 147
                 l tt ++ d  s   + ++++    +  ++iiDE H lg++
  KOO23736.1 815 LATTPEKWDGVS---RHWQQRGYVRQVGLVIIDEIHLLGED 852
                 ************...7888888888889********99885 PP

>> Helicase_C  Helicase conserved C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.0   0.0   1.2e-08   3.7e-05      36     109 ..     203     286 ..     130     288 .. 0.69
   2 !   13.5   0.0   2.3e-05      0.07      36      89 ..     900     952 ..     872     966 .. 0.84
   3 ?   -1.3   0.0      0.92   2.7e+03      38      62 ..    1026    1052 ..    1014    1058 .. 0.77

  Alignments for each domain:
  == domain 1  score: 24.0 bits;  conditional E-value: 1.2e-08
                 HHHTTSTEEEESTTSTHHHHHHHHHHHHTTSSSEEEESGGGTSSSTSTTESEEE.....ESSSS......SSHHHHHHHHTTSSS CS
  Helicase_C  36 lekkgikvavlhgelpqnereeileqfnkgesdvLiatdvaerGidipkvnlVi.....nfdlp......rnvtsyiqriGRtgR 109
                 +e +g  + v+h+ +   +r  + + f +g  +vL++t  ++ G+++p +++Vi      +d+        +v +++q  GR+gR
  KOO23736.1 203 RELFGGGFGVHHAGMLRADRGLSERLFSEGLLNVLVCTATLAWGVNLP-AHTVIikgtqLYDPEkgsfkdLGVLDVMQIFGRAGR 286
                 4556889999*************************************9.555552666556666555533337***********9 PP

  == domain 2  score: 13.5 bits;  conditional E-value: 2.3e-05
                 HHHTTSTEEEESTTSTHHHHHHHHHHHHTTSSSEEEESGGGTSSSTSTTESEEE CS
  Helicase_C  36 lekkgikvavlhgelpqnereeileqfnkgesdvLiatdvaerGidipkvnlVi 89 
                 +++ ++ v ++h+ l  ++r  + + f ++ + vL++t+ ++ G+++p  +lV+
  KOO23736.1 900 KHTLAFGVGIHHAGLCESDRTTVERLFVSQAIMVLVCTSTLAWGVNFPA-HLVV 952
                 3444788999*****************999999**************95.5544 PP

  == domain 3  score: -1.3 bits;  conditional E-value: 0.92
                  HT..TSTEEEESTTSTHHHHHHHHHHH CS
  Helicase_C   38 kk..gikvavlhgelpqnereeileqf 62  
                  +   +i++ v++g++++++ ++  e  
  KOO23736.1 1026 QLhdHINAEVVNGTITSKQVRHNEEHV 1052
                  335589*************99988765 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.1   0.0     0.017        51      91     104 ..      68      83 ..      26      95 .. 0.79
   2 !   18.8   0.0   5.2e-07    0.0016       5     126 ..     733     880 ..     730     891 .. 0.68

  Alignments for each domain:
  == domain 1  score: 4.1 bits;  conditional E-value: 0.017
      AAA_22  91 v..ielliiDEaqhlr 104
                 v  ++lliiDE++ l+
  KOO23736.1  68 VsaVGLLIIDEVHLLN 83 
                 13458*********95 PP

  == domain 2  score: 18.8 bits;  conditional E-value: 5.2e-07
      AAA_22   5 agilvvtGesGtGKTtllrrlleqldeeakaeeerpevv.fvtlpsstsskdllrellralglelka....................erlsseelleal 82 
                 ++ ++v  ++G+GKT++++  + +l ++  +  +++ ++   ++ + + ++d  +++++ lgl+l +                     + + + + ++ 
  KOO23736.1 733 DQNILVGSPTGSGKTVTAELAVLRLLRA--HPGMKAVYIaPLKALVRERLDDWTTKFVKRLGLSLQEltgdsapdaralatadilatTPEKWDGVSRHW 829
                 566777789***************9643..222333333344444444666778888888888888888899*****9*99999986666777777999 PP

      AAA_22  83 eqalraravielliiDEaqhlr..s.......eealeeLrsllnl..srkgvqli 126
                 +q    r+v +l+iiDE++ l   +        +al  +     +  ++ ++q++
  KOO23736.1 830 QQRGYVRQV-GLVIIDEIHLLGedRgpiletrLTALDLIAY---CsaDERDTQFV 880
                 999999999.***********76533444222333333333...14457777766 PP

>> T2SSE  Type II/IV secretion system protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.0   2.3e-06    0.0068     115     150 ..     680     754 ..     578     767 .. 0.64

  Alignments for each domain:
  == domain 1  score: 15.5 bits;  conditional E-value: 2.3e-06
       T2SSE 115 k.......................................ekiaevlrkavrerglilvsGgTgsGKttllyall 150
                 +                                       + + +v ++  ++ ++ilv  +TgsGKt+++  ++
  KOO23736.1 680 ElhlptaqpahtelldlrplpktvlcdpnwealfkfshfnPIQTQVFHTVFHTDQNILVGSPTGSGKTVTAELAV 754
                 333333334444444444444444444444444444444488889999999999****************96544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1316 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       552  (0.0307881); expected 358.6 (0.02)
Passed bias filter:                      518  (0.0288917); expected 358.6 (0.02)
Passed Vit filter:                        47  (0.00262145); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.83u 0.28s 00:00:01.10 Elapsed: 00:00:00.43
# Mc/sec: 9108.03
//
Query:       KOO23737.1  [L=1142]
Description: nucleoporin 155 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.7e-50  171.4   0.0      4e-50  170.8   0.0    1.1  1  Nucleoporin_N  Nup133 N terminal like
  ------ inclusion threshold ------
       0.11   12.2   0.9       0.21   11.4   0.9    1.4  1  SurA_N_3       SurA N-terminal domain


Domain annotation for each model (and alignments):
>> Nucleoporin_N  Nup133 N terminal like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  170.8   0.0   4.5e-54     4e-50      11     303 ..      75     371 ..      69     411 .. 0.89

  Alignments for each domain:
  == domain 1  score: 170.8 bits;  conditional E-value: 4.5e-54
                    E.E--HCHHHTTS--SS-EEEEEECTTTEEEEEETTEEEEEETTSSSS...EEEEEE----S---EEEEEE---SSSS-SSSCEEEEECTTSEEEE CS
  Nucleoporin_N  11 l.alPdelleelnhtesstkgglfpeigrawitvdnklflWnYnstasspstdtipydgeehtilavglLvkpkpgtfveevgllLvvattgeivy 105
                    + ++P  l + ++    ++  glfp+i raw+t+d  l+lW+Yn+++      +  ydg+++ti + + Lv+p++g+f + +  lL+++t++e+++
     KOO23737.1  75 YtPMPAALQQAAQGEYYHSFQGLFPQIHRAWMTIDHVLYLWDYNDPR----GSFYLYDGLDQTIIHAS-LVRPRQGVFEPTPDWLLLLSTPVEVIL 165
                    5589999999999999*******************************....9****************.*************************** PP

                    ECECCS--------EEEEEEEE--EETT.TTEEEEEEETTTC-EEEEETTSSEEEEEEC-SSS-..CEEEEEEEEE-SSSS-...--SSS--G--- CS
  Nucleoporin_N 106 weviysaasllstnelslfntdlsvssdgeivtqvinseptgriflagstgrlyeltyrdssgw..pslkckkicltkgglssllsilpgvlsgas 199
                    +++  +a     t+  ++f+t++sv +dg +  q i ++p+grif+ag++g +yelty ds+gw  +++kc+k +++       l  l++v    +
     KOO23737.1 166 LGLYTTA-----THDINVFETGYSVATDGANLLQ-IVGTPSGRIFMAGADGFVYELTYGDSEGWfyTNKKCTKRNRSRKRDV-ALQYLSSVVY--D 252
                    **88888.....99********************.77899************************888******888888777.4678888877..9 PP

                    -GG-EEEEEEECCTCEEEEEETTSEEEEEEEETTCEE-EEEEEEEHHHHHHHH....HHSCHTT.............TCGCTTT-EEEEEEES-TT CS
  Nucleoporin_N 200 ereeivqlridssrrilytlsskgvirvydlsasngesslksdidirqillea...iteslias.............aplaskslkildispvsae 279
                    ++++i  l+ d +r +lytls+ ++++ +dl  + ge   +  + ++ + l a   ++ +++++                 ++++ ++ ++p+++ 
     KOO23737.1 253 SSDPILDLVYDAERSLLYTLSRASTLQLFDLG-WDGEGPVRFVARLEAQKLAAdlrSQSKVRDApiyakvdkdikegEQNKEGQTAFVALAPLPSA 347
                    ********************************.7775555555555544444423555555555***********9889999************** PP

                    TSSCEEEEEEECSSSEEEEEEEEE CS
  Nucleoporin_N 280 essllhlvaitsngvrlylllsss 303
                     s++l+lv  t++gvr yl ++  
     KOO23737.1 348 LSKQLQLVITTVSGVRVYLEVVDA 371
                    ******************988765 PP

>> SurA_N_3  SurA N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.9   2.3e-05      0.21      97     160 ..       5      64 ..       2      65 .. 0.88

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 2.3e-05
    SurA_N_3  97 llqeakklglsvsdeevakeiasipaFqedGkFdkerYkqlLaangltpe.efeaslredlllqk 160
                 +l +a+k++l+ s+++vak ++++  +      d+++Y +lL+++++ ++  +e++l+++ l+++
  KOO23737.1   5 ILSKAEKEKLADSRKQVAKVLERDANLS-----DRDLYDRLLKQARMPEQdMYEEKLADNALIHQ 64 
                 5779********************9888.....**************775169999999888766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1142 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       545  (0.0303977); expected 358.6 (0.02)
Passed bias filter:                      424  (0.0236488); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.73u 0.30s 00:00:01.03 Elapsed: 00:00:00.42
# Mc/sec: 8208.17
//
Query:       KOO23738.1  [L=494]
Description: h aca ribonucleoprotein complex subunit 4 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    2.3e-34  117.3   0.3    1.1e-32  111.8   0.2    2.4  2  DKCLD        DKCLD (NUC011) domain
    3.6e-24   85.8   0.8    2.3e-21   76.7   0.8    3.2  1  TruB_N       TruB family pseudouridylate synthase (N terminal
    6.7e-21   74.2   0.8    1.4e-20   73.1   0.8    1.6  1  TruB_C_2     tRNA pseudouridylate synthase B C-terminal domai
      4e-20   71.6   2.2    7.9e-20   70.6   2.2    1.5  1  PUA          PUA domain
  ------ inclusion threshold ------
      0.054   13.8   0.0       0.17   12.2   0.0    1.9  2  UPF0113      UPF0113 PUA domain
        2.4    8.2  18.4          4    7.5  18.4    1.3  1  YL1          YL1 nuclear protein


Domain annotation for each model (and alignments):
>> DKCLD  DKCLD (NUC011) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  111.8   0.2   3.8e-36   1.1e-32       1      58 []      30      87 ..      30      87 .. 0.99
   2 ?    2.9   0.0      0.04   1.2e+02       4      28 ..     270     294 ..     268     296 .. 0.89

  Alignments for each domain:
  == domain 1  score: 111.8 bits;  conditional E-value: 3.8e-36
                XXXXX....XXX-EEESS-----TTSS--GGG--HHHHHHTEEEEEEE-SSS-HHHHH CS
       DKCLD  1 tsewpllLknydkllvrtehytplpaGssPlkRpieeyikyGvinLDKPsnPsSHEVV 58
                ts+wpllLknyd+l+vrt+hytp+p+G++PlkRp+eey+kyGvinLDKP+nPsSHEVV
  KOO23738.1 30 TSKWPLLLKNYDQLHVRTGHYTPIPSGFTPLKRPLEEYLKYGVINLDKPANPSSHEVV 87
                689******************************************************9 PP

  == domain 2  score: 2.9 bits;  conditional E-value: 0.04
                 XX....XXX-EEESS-----TTSS- CS
       DKCLD   4 wpllLknydkllvrtehytplpaGs 28 
                 +++lL+ny++++++ ++ + + +G 
  KOO23738.1 270 LEILLTNYKRIVLKDSAVNAVCYGA 294
                 789*************999999986 PP

>> TruB_N  TruB family pseudouridylate synthase (N terminal domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   76.7   0.8   7.7e-25   2.3e-21       1     149 []      91     207 ..      91     207 .. 0.94

  Alignments for each domain:
  == domain 1  score: 76.7 bits;  conditional E-value: 7.7e-25
                 HHHTT-S-EEESS---TT-EEEEEEEEGGGGGGHHHCTTS-EEEEEEEEETEEETTSBTTS-EEE-.--TT--HHHHHHHHHHC-EEE----------- CS
      TruB_N   1 krllkakkvGhtGtLDplatGvLvvavgeaTklleylleadKeYeatirlgaetdteDaegeileeekveklteekleevlkkftGeieqvppmySAvk 99 
                 +r+l+++k Gh+GtLDp++tG+L+v++++aT+l+++ + a K+Y+a++r +a+ ++e                  k+ ++l+++tG++ q+pp +SAvk
  KOO23738.1  91 RRILRVEKTGHSGTLDPKVTGCLIVCINRATRLVKSQQGAGKQYIAVLRTHAAVESER-----------------KMLQALEQLTGALFQRPPLISAVK 172
                 89***********************************************999887764.................46789******************* PP

                 ----------------------EEEEEEEEEEEEEE..EEEEEEEESTTTTH CS
      TruB_N 100 vnGkrlyelaregeeverkkrkvtiyelelleveep..evelevecskGtYi 149
                                  r+ r  tiy+ +l+e++++     ++v+c++GtYi
  KOO23738.1 173 -----------------RQLRVRTIYDNKLTEFDKErnLTVFRVDCEAGTYI 207
                 .................999*************98877889**********8 PP

>> TruB_C_2  tRNA pseudouridylate synthase B C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   73.1   0.8   4.8e-24   1.4e-20       1      63 [.     208     274 ..     208     275 .. 0.95

  Alignments for each domain:
  == domain 1  score: 73.1 bits;  conditional E-value: 4.8e-24
                 HHHHHHHHHHTTS-EEEEEEEEEEETTE.GG-..B-HHHHHHHHHHHHT..--H.HHHHEEEGGGGG CS
    TruB_C_2   1 RtLcdDiGeaLgcgAhveeLRRtrvgpf.deedmvtledLedavllyke..dee.LdrlllPlesal 63 
                 RtLc ++G++Lg+g+h++eLRR r+g + ++e+++t++d+ da+++y++  de+ L+++++Ple +l
  KOO23738.1 208 RTLCVHLGLVLGTGGHMQELRRSRSGILsENEHLMTMHDVMDAQYMYDQtkDETyLRHVIKPLEILL 274
                 9***************************99999****************96666**********887 PP

>> PUA  PUA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.6   2.2   2.6e-23   7.9e-20       1      73 [.     278     350 ..     278     351 .. 0.98

  Alignments for each domain:
  == domain 1  score: 70.6 bits;  conditional E-value: 2.6e-23
                 CEEEE-HHHHHHHHTT-EEEGGGEEEEETT--TTSEEEEEETTSCEEEEEEESS-HHHHHHHCTSEEEEEEEE CS
         PUA   1 grvvvddgAvkallsgasLlapGvvevegdfeegdvVaivdedgelvavGlanysseelakikggksveierv 73 
                 +r+v++d+Av+a+++ga+L+ pG++++   +e +++V++++++ge+vavG+a++ ++++a +++g +++i+rv
  KOO23738.1 278 KRIVLKDSAVNAVCYGAKLMLPGLLRFAAGIEVNEEVVLMTTKGEAVAVGIALMATADMAHCDHGAVAKIKRV 350
                 59*********************************************************************98 PP

>> UPF0113  UPF0113 PUA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.0       1.8   5.3e+03      57      75 ..     190     208 ..     179     209 .. 0.73
   2 ?   12.2   0.0   5.7e-05      0.17       2      55 ..     280     333 ..     279     360 .. 0.85

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 1.8
     UPF0113  57 aspgkivvknlaDiGeYlR 75 
                 ++++ +v++  +  G+Y+R
  KOO23738.1 190 KERNLTVFRVDCEAGTYIR 208
                 45666777777899***99 PP

  == domain 2  score: 12.2 bits;  conditional E-value: 5.7e-05
     UPF0113   2 vvvkekaeklFLYGrdvlkesilkitesvkenqvvvVlnengeplGiGkirkdt 55 
                 +v+k +a + + YG +++  ++l++  +++ n+ vv++ ++ge++++G++   t
  KOO23738.1 280 IVLKDSAVNAVCYGAKLMLPGLLRFAAGIEVNEEVVLMTTKGEAVAVGIALMAT 333
                 799********************************************9987654 PP

>> YL1  YL1 nuclear protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.5  18.4    0.0013         4      66     127 ..     432     493 ..     418     494 .] 0.61

  Alignments for each domain:
  == domain 1  score: 7.5 bits;  conditional E-value: 0.0013
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxx RF
         YL1  66 edeeegekelerqerkkrkkekkkrkaqkkkskkkkkkqkkkkkkkidpqak.eprpkkkser 127
                    eegek+l ++e++++k++k  +k ++k ++++  ++++kkkk +d  +  ++ pkkk+++
  KOO23738.1 432 GAAEEGEKKLSKEEKAAKKAAKAAKK-AAKEAASAGGDSATKKKKDADSDSDsDEAPKKKKKK 493
                 34568*************66644444.455555555566666666566633333455555433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (494 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1647  (0.0918623); expected 358.6 (0.02)
Passed bias filter:                      757  (0.0422221); expected 358.6 (0.02)
Passed Vit filter:                       135  (0.0075297); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.70u 0.26s 00:00:00.96 Elapsed: 00:00:00.42
# Mc/sec: 3547.69
//
Query:       KOO23739.1  [L=939]
Description: DNA repair and recombination protein rad54-like protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.9e-48  164.0   0.0      6e-48  163.3   0.0    1.2  1  SNF2_N      SNF2 family N-terminal domain
    3.4e-14   53.1   0.0      1e-13   51.6   0.0    1.8  2  Helicase_C  Helicase conserved C-terminal domain
    0.00048   20.2   0.0     0.0011   19.0   0.0    1.7  1  ResIII      Type III restriction enzyme, res subunit
    0.00072   19.4   0.2     0.0024   17.6   0.0    1.9  2  DEAD        DEAD/DEAH box helicase
  ------ inclusion threshold ------
      0.067   12.3   0.0       0.31   10.2   0.0    1.9  1  HDA2-3      Class II histone deacetylase complex subunits 2 a


Domain annotation for each model (and alignments):
>> SNF2_N  SNF2 family N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  163.3   0.0   1.7e-51     6e-48      54     342 ..     387     674 ..     367     682 .. 0.84

  Alignments for each domain:
  == domain 1  score: 163.3 bits;  conditional E-value: 1.7e-51
                 TT--EEE---TTS--HHHHHHHHH...HHTTTS---.......S-EEEE--HHHHHHHHHHHHHH-TT..S-EEE--SSHHHH---------------- CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
      SNF2_N  54 svrGGiLaDemGLGKTvqvlalilaqrakeekdkekkrkdtlagptLivvPaslldqWeneierhvss..salrvlvyggqkkmkkkntkvapkllady 150
                   +G++LaD+mGLGKT+q++a i+++ +   +  e+ + + l + + +++P+sl+++W +e+++++++   +l+  v +++ k + + + ++ + l+++
  KOO23739.1 387 IGKGCLLADDMGLGKTLQTIATIHTLLY---SCMEPGKSKGLITTAAVICPTSLVHNWRDEVAKWTEGlpRKLNLTVLTSDMKDDIEAKLMSFRALRTA 482
                 4689********************7777...44444556788888899******************8622577777777777778888899******** PP

                 -EEEE-HHHHHHHT......TTS-S-S-SEEEES-GGGT--TTSHHHHHHHH---S-EEEE-S--SSS-HHHHHHHHHHH-TTTT--HHHHHHHTHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
      SNF2_N 151 dvvittYdvlsreaelqkkrsvlkqvewkrvvlDEghtlknstskaaeavskLstsnrwiltGTPiqnsledlygLlkfLreepfgekqtfdkllqrpi 249
                   +i +Yd+ + ++      ++l  +    +v+DE+h+lkn ++ + +a+  L t+ r+++tGTPiqn+le++++Ll+f  ++ +g+ + f+  + + i
  KOO23739.1 483 RLLILSYDTARLHV------ETLRTIPLGLLVCDEAHKLKNLKTALFQALFGLPTQMRLMVTGTPIQNGLEEFFALLHFCIPDGLGSEKEFQAKYGKAI 575
                 ***********777......9****************************************************************************** PP

                 H............HHHHHHHHHHHTT-STTEE---GGGT--S---EEEEEEEEE--HHHHHHHH......................HHHHHH-HHH-HH CS
                 x............xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxx RF
      SNF2_N 250 e............aqaekgrsrLlqllqrlmlrrakkdveknlPpkteeiiflklskverksYnrllevlrkkalak..llkrseaalkssskskekil 334
                 e            +   + +s  + ++++lmlrr+++ + k+lP k   ++f++l+ +++ +Y+  +ev  + a+ +   ++ ++a+ ++        l
  KOO23739.1 576 EkardleasdaeiERGSAASSAFIAIVNQLMLRRSNEVIAKYLPAKLDVLVFCSLTGEQQAAYT--HEVTVGRAAWQraAKTGEKAQQNK------TAL 666
                 ***********99999999*********************************************..554444443320022222222222......234 PP

                 HHHHHHHH CS
                 xxxxxxxx RF
      SNF2_N 335 elllelrq 342
                  ++ +l++
  KOO23739.1 667 RTVAMLKK 674
                 44444444 PP

>> Helicase_C  Helicase conserved C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.0       2.1   7.5e+03      24      63 ..     440     477 ..     435     493 .. 0.60
   2 !   51.6   0.0   2.8e-17     1e-13       5     111 .]     698     808 ..     694     808 .. 0.87

  Alignments for each domain:
  == domain 1  score: -2.7 bits;  conditional E-value: 2.1
                 SSHHHHHH.HHHHHHHTTSTEEEESTTSTHHHHHHHHHHHH CS
  Helicase_C  24 ntidrlek.vklllekkgikvavlhgelpqnereeileqfn 63 
                 n +d++ k ++ l   ++++ +vl+++++ +   + + +f+
  KOO23739.1 440 NWRDEVAKwTEGL--PRKLNLTVLTSDMKDDIEAKLM-SFR 477
                 6666665444555..4478888899988877765554.444 PP

  == domain 2  score: 51.6 bits;  conditional E-value: 2.8e-17
                 HHHHHH..HHTTTTSEEEEEESSHHHHHHHHHHHHHTTSTEEEESTTSTHHHHHHHHHHHH.TTSSS.EEEESGGGTSSSTSTTESEEEESSSSSSHHH CS
  Helicase_C   5 allell..kleeeggkilifvntidrlekvklllekkgikvavlhgelpqnereeileqfn.kgesd.vLiatdvaerGidipkvnlVinfdlprnvts 99 
                 a+ +ll   ++  +++ ++++n+++ l+ ++ +l+k+ +++ +l+g+l +n+r+e +++fn + ++  +L+++++++ Gi++ ++n +i fd+++n++ 
  KOO23739.1 698 AMRALLreVKRTTDDRFVLISNSTSILDLFDAVLSKERLRFMRLDGSLAANKRQERVDAFNtDPSIFaFLLSSKAGGCGINLIGANRLILFDPDWNPAI 796
                 5555555447888899999999999997777778999************************7445446******************************* PP

                 HHHHHTTSSSTT CS
  Helicase_C 100 yiqriGRtgRag 111
                   q+  R++R g
  KOO23739.1 797 DAQALARVWRSG 808
                 **********75 PP

>> ResIII  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.0   0.0   3.1e-07    0.0011       3     170 ..     365     542 ..     363     543 .. 0.71

  Alignments for each domain:
  == domain 1  score: 19.0 bits;  conditional E-value: 3.1e-07
                 EE-HHHHHHHHHHT......TTS...EEE.EEESTTSTHHHHHHHHHHHH-S.............-EEEEESSHHHHHHHHHHGGGGTGG.....GEEE CS
      ResIII   3 elreyQeeaienlleklkskrdk...rgl.ikmaTGtGKTlvaaklierllkkgkee........kflflvprkslleqtleefkkflseayke.igkk 88 
                 +lr++Q   ++ ++++     +k   +g+ ++   G GKTl  +++i  ll +  e          + +++p +sl+  +++e++k+++    + + ++
  KOO23739.1 365 KLRPHQSAGCQFIVQACLG--RKaigKGClLADDMGLGKTLQTIATIHTLLYSCMEPgkskglitTAAVICP-TSLVHNWRDEVAKWTEGLPRKlNLTV 460
                 6778887777777766642..22235555489999********99999999998877899999966666666.5899*******999999877664444 PP

                 ESSS-B--.............-SEEEEEHHHHHHTH........HHHTTT-SEEEEETGGGTTS.T.TTHHHHHT---SEEEEEESS-S CS
      ResIII  89 vsgdkkka......kekdstnkkilvttiqsldadseeeeeeseellrdrfdviiiDEaHrlgakk.swreilekfkeavllglTATpe 170
                 +++d k+       + ++  ++++l+ +++++  +        e+l+     ++++DEaH+l+  k +  ++l  ++ +++l +T+Tp 
  KOO23739.1 461 LTSDMKDDieaklmSFRALRTARLLILSYDTARLHV-------ETLRTIPLGLLVCDEAHKLKNLKtALFQALFGLPTQMRLMVTGTPI 542
                 444444443455555566667777777777777777.......333334444************75444455677799*********96 PP

>> DEAD  DEAD/DEAH box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.6   0.0   6.8e-07    0.0024      14     135 ..     388     517 ..     374     533 .. 0.74
   2 ?   -2.9   0.0       1.3   4.8e+03      76     139 ..     666     736 ..     652     744 .. 0.57

  Alignments for each domain:
  == domain 1  score: 17.6 bits;  conditional E-value: 6.8e-07
                 TCEEEEEESTTSSHHHHHHHHHHHHHHHS......TTSTS-EEEEEESSHHHHHHHHHHHHHHTTTSTSEEE.EEETTSSHHHHHHHH...H..TTCSE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxx......xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxx...x..xxxxx RF
        DEAD  14 ggdvlvaaeTGsGKTlaflipvlqivyet......kgktgpkalivePtreLaeqtlnnlkkfkkyidlrvl.liiggvaardqlskl...d..ngvdi 100
                 g+ +l+a + G GKTl  +  +   +y+       kg  +  a +++Pt +L+++  +++ k+++ +  +++  +++++ ++d  +kl   +  +++++
  KOO23739.1 388 GKGCLLADDMGLGKTLQTIATIHTLLYSCmepgksKGLIT-TAAVICPT-SLVHNWRDEVAKWTEGLPRKLNlTVLTSDMKDDIEAKLmsfRalRTARL 484
                 678999999*******998888888887798885444444.67777887.7**************8664444234455555555555533323355888 PP

                 EEEEHHHHHHHHHCTSSHCTTEEEEEEETHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD 101 vvgtpgrlddllstgklnlsqvrflVlDEadrlld 135
                 ++   +    +++t   ++  + +lV DEa++l +
  KOO23739.1 485 LILSYDTARLHVETL--RTIPLGLLVCDEAHKLKN 517
                 888888888888754..499999*********986 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 1.3
                 SEEEEEETTSSHHHHHHHHHTTCSEEEEEHHHHHHHH.........HCTSSHCTTEEEEEEETHHHHHHTTTH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.........xxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD  76 lrvlliiggvaardqlskldngvdivvgtpgrlddll.........stgklnlsqvrflVlDEadrlldqgfs 139
                 lr+++++++ a +  + ++  +vd  v+  g+l  +          ++ ++ l + ++ +lD  d +l++++ 
  KOO23739.1 666 LRTVAMLKKIALEARQGAI--DVDAAVAASGKLRAMRallrevkrtTDDRFVLISNSTSILDLFDAVLSKERL 736
                 5555555555555555555..5666666666666544455655544334455666666677766666666555 PP

>> HDA2-3  Class II histone deacetylase complex subunits 2 and 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.0   8.6e-05      0.31      87     247 ..     690     832 ..     686     839 .. 0.73

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 8.6e-05
                 HHT-HHHHHHHHHHHHHTTSS....EEEEEEE-STHHHHHHHHHHTTSSSEEEESSS--S--S---S-..................-SEEEEEEESS-- CS
      HDA2-3  87 aetSgKFkvlndlvnliierkrksslnvlvvakskkeldLiEalllGkklkikrysgeklydekkkkskdtkknsrktkeklkkkihsltihllsttrq 185
                 +  SgK+  ++ l+  +   ++++    +++++s   ldL +a+l   +l + r++g    ++ +++                 ++ +++  ++++   
  KOO23739.1 690 VAASGKLRAMRALLREVKRTTDDR---FVLISNSTSILDLFDAVLSKERLRFMRLDGSLAANKRQERV----------------DAFNTDPSIFAFLLS 769
                 678**********99998888555...589***************************98888888777................333334444444444 PP

                 -TTTS--TT-S-EEEEEE-SST--TTSHHHHHHH----.------EEEEEETTSHHHHHHHHT CS
      HDA2-3 186 ltkdksllenikfdliiafDssvdtsspsveslrtqnr.kknklpiirlvpinSieHvkLcfk 247
                 ++      + i ++ +i fD++ +++ +   + r  +  +++++ ++rl ++ S e v L ++
  KOO23739.1 770 SKAGGCGINLIGANRLILFDPDWNPAIDAQALARVWRSgQQKPCYVYRLFAVGSLEEVCLGRQ 832
                 444455566677777888888888888887777765441444588888888888888877665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (939 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       915  (0.0510346); expected 358.6 (0.02)
Passed bias filter:                      515  (0.0287244); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.76u 0.28s 00:00:01.04 Elapsed: 00:00:00.45
# Mc/sec: 6334.71
//
Query:       KOO23740.1  [L=320]
Description: hypothetical protein Ctob_004621 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (320 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       621  (0.0346366); expected 358.6 (0.02)
Passed bias filter:                      383  (0.021362); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.46u 0.26s 00:00:00.72 Elapsed: 00:00:00.42
# Mc/sec: 2303.49
//
Query:       KOO23741.1  [L=180]
Description: hypothetical protein Ctob_004619 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.7e-14   52.5  12.5    0.00038   20.3   0.2    4.9  5  LRR_6     Leucine Rich repeat
     0.0012   19.2   5.0       0.15   12.5   0.5    3.1  4  LRR_4     Leucine Rich repeats (2 copies)


Domain annotation for each model (and alignments):
>> LRR_6  Leucine Rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.1       1.2   1.1e+04      18      24 .]      44      50 ..      43      50 .. 0.87
   2 !   20.3   0.2   4.2e-08   0.00038       2      24 .]      56      78 ..      55      78 .. 0.95
   3 !   15.5   0.2   1.4e-06     0.013       2      24 .]      84     106 ..      84     106 .. 0.92
   4 !   19.7   0.3   6.7e-08    0.0006       2      24 .]     112     134 ..     111     134 .. 0.93
   5 ?    2.9   0.0     0.016   1.4e+02       2      19 ..     140     157 ..     139     161 .. 0.83

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 1.2
       LRR_6 18 eGaeaLa 24
                +G+ aLa
  KOO23741.1 44 DGLLALA 50
                6999998 PP

  == domain 2  score: 20.3 bits;  conditional E-value: 4.2e-08
       LRR_6  2 nthLteLdLsgNdIgDeGaeaLa 24
                nt Lt+L+L++N ++D G+ aLa
  KOO23741.1 56 NTELTSLSLRHNSMSDNGVRALA 78
                899*******************8 PP

  == domain 3  score: 15.5 bits;  conditional E-value: 1.4e-06
       LRR_6   2 nthLteLdLsgNdIgDeGaeaLa 24 
                 nt Lt L L +N Ig+eGa aLa
  KOO23741.1  84 NTALTVLLLGFNSIGNEGARALA 106
                 667999****************8 PP

  == domain 4  score: 19.7 bits;  conditional E-value: 6.7e-08
       LRR_6   2 nthLteLdLsgNdIgDeGaeaLa 24 
                 n+ Lt LdL +N Ig eGa+aLa
  KOO23741.1 112 NSALTLLDLDSNAIGAEGASALA 134
                 777999****************8 PP

  == domain 5  score: 2.9 bits;  conditional E-value: 0.016
       LRR_6   2 nthLteLdLsgNdIgDeG 19 
                 n+ L  L L +N +++e 
  KOO23741.1 140 NSALVVLTLGSNPLDGES 157
                 677999*********996 PP

>> LRR_4  Leucine Rich repeats (2 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.0   0.2   0.00093       8.3       1      15 [.      57      71 ..      26      77 .. 0.77
   2 !   12.5   0.5   1.7e-05      0.15       1      36 [.      57      97 ..      57     102 .. 0.83
   3 !    8.4   0.3   0.00033       2.9       1      33 [.      85     123 ..      85     128 .. 0.77
   4 !    7.2   0.1   0.00077       6.9       3      36 ..     115     153 ..     113     157 .. 0.75

  Alignments for each domain:
  == domain 1  score: 7.0 bits;  conditional E-value: 0.00093
                SS--EEE--SS---E CS
       LRR_4  1 pnLevLdLsnNqltd 15
                + L++L+L++N ++d
  KOO23741.1 57 TELTSLSLRHNSMSD 71
                456666666666666 PP

  == domain 2  score: 12.5 bits;  conditional E-value: 1.7e-05
                SS--EEE--SS---E-S-..HH...H.-TT--EEE-.-S--- CS
       LRR_4  1 pnLevLdLsnNqltdipl..le...k.lpnLkeLdLsgNnli 36
                + L++L+L++N ++d +   l+   k ++ L++L L g+n i
  KOO23741.1 57 TELTSLSLRHNSMSDNGVraLAdalKiNTALTVL-LLGFNSI 97
                68*************9996644888889******.7676666 PP

  == domain 3  score: 8.4 bits;  conditional E-value: 0.00033
                 SS--EEE--SS---E-S-..HH....H-TT--EEE-.-S CS
       LRR_4   1 pnLevLdLsnNqltdipl..le....klpnLkeLdLsgN 33 
                 + L+vL L+ N +   +   l+     +  L+ LdL +N
  KOO23741.1  85 TALTVLLLGFNSIGNEGAraLAgaleVNSALTLLDLDSN 123
                 579***********8777773356625999******777 PP

  == domain 4  score: 7.2 bits;  conditional E-value: 0.00077
                 --EEE--SS---E-S-..HH...H.-TT--EEE-.-S--- CS
       LRR_4   3 LevLdLsnNqltdipl..le...k.lpnLkeLdLsgNnli 36 
                 L+ LdL +N +   +   l+   k +  L +L+L +N ++
  KOO23741.1 115 LTLLDLDSNAIGAEGAsaLAealKaNSALVVLTLGSN-PL 153
                 999*********7777674466644888******666.55 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (180 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       333  (0.0185733); expected 358.6 (0.02)
Passed bias filter:                      250  (0.0139439); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.40u 0.25s 00:00:00.65 Elapsed: 00:00:00.42
# Mc/sec: 1288.12
//
Query:       KOO23742.1  [L=341]
Description: ankyrin repeat domain-containing protein 29, partial [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.1e-31  107.4   0.5    1.7e-11   44.6   0.0    3.3  3  Ank_2     Ankyrin repeats (3 copies)
    1.4e-25   89.3   0.6      5e-10   39.7   0.0    5.7  6  Ank_4     Ankyrin repeats (many copies)
    2.9e-23   81.2   6.7    0.00041   20.7   0.1    6.2  6  Ank       Ankyrin repeat
    1.3e-18   65.1   2.8      0.001   19.4   0.0    6.6  6  Ank_3     Ankyrin repeat
    7.4e-17   61.2   1.1    6.8e-05   23.1   0.0    5.3  6  Ank_5     Ankyrin repeats (many copies)


Domain annotation for each model (and alignments):
>> Ank_2  Ankyrin repeats (3 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.6   0.0   4.7e-15   1.7e-11      13      81 ..     103     186 ..      73     188 .. 0.85
   2 !   34.7   0.0   5.6e-12     2e-08      26      70 ..     158     208 ..     154     218 .. 0.87
   3 !   39.6   0.0   1.6e-13   5.7e-10      12      83 .]     216     300 ..     208     300 .. 0.80

  Alignments for each domain:
  == domain 1  score: 44.6 bits;  conditional E-value: 4.7e-15
       Ank_2  13 vklLl.egadpn...k.....ngktaLhyAakngnleivklLleh.ad.nd....grtpLhyAarsghleivklLlekgadinl 81 
                 + lLl +gadpn   k     ++ t+L  A  +g++ +v+lLleh a+ n+    g t++++A+ +gh+e+v lLle+ga +++
  KOO23742.1 103 LSLLLkSGADPNvlcKvdwqpFETTPLLEASVAGYKRLVRLLLEHgAKpNTvvgpGFTAIYNACMNGHYEVVALLLEHGATVTQ 186
                 567778999999987255779***********************99553334555************************98875 PP

  == domain 2  score: 34.7 bits;  conditional E-value: 5.6e-12
       Ank_2  26 gktaLhyAakngnleivklLleh......adndgrtpLhyAarsghleivk 70 
                 g ta++ A++ng+ e+v lLleh      ++++g +pL+++a++gh ++v 
  KOO23742.1 158 GFTAIYNACMNGHYEVVALLLEHgatvtqLTDEGFSPLYISAQNGHMDCVV 208
                 57********************99886554499***************996 PP

  == domain 3  score: 39.6 bits;  conditional E-value: 1.6e-13
       Ank_2  12 lvklLlegadpn.k..ngktaLhyAakngnleivklLleh......adndgrtpLhyAarsg.......hleivklLlekgadinlkd 83 
                 + k L    d++ k   g taL++A++ng+ ++v  L+++      +++ g tpL++A   +       h++++++Lle ga+++lkd
  KOO23742.1 216 MTKELA---DLGpKelGGATALYIAVQNGHPDCVHQLIKAgcaidpVTEAGSTPLMIALYLSdiyadkpHIDCARMLLEAGASLELKD 300
                 555555...444323569********************977785565589*********88567778899*************99987 PP

>> Ank_4  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.8   0.0     0.025        89       6      30 ..      92     116 ..      87     124 .. 0.77
   2 !   39.7   0.0   1.4e-13     5e-10       1      55 []     125     178 ..     125     178 .. 0.97
   3 !   24.7   0.0   7.3e-09   2.6e-05      12      51 ..     169     207 ..     169     209 .. 0.95
   4 !   14.3   0.0   1.3e-05     0.046      34      53 ..     229     248 ..     212     250 .. 0.83
   5 ?   -0.0   0.0      0.41   1.5e+03      24      44 ..     253     272 ..     249     276 .. 0.75
   6 !   10.8   0.0   0.00016      0.57      10      41 ..     272     309 ..     263     312 .. 0.79

  Alignments for each domain:
  == domain 1  score: 3.8 bits;  conditional E-value: 0.025
       Ank_4   6 hyaaisgrlelvrlLlekgadinaq 30 
                    a++ +   + lLl +gad+n  
  KOO23742.1  92 CEYASKKCQSELSLLLKSGADPNVL 116
                 5556677888899**********87 PP

  == domain 2  score: 39.7 bits;  conditional E-value: 1.4e-13
       Ank_4   1 eltaLhyaaisgrlelvrlLlekgadinaqdnrsGetalhiAakrgnveilklLl 55 
                 e+t+L  a  +g  +lvrlLle+ga +n +  + G+ta+++A+++g++e++ lLl
  KOO23742.1 125 ETTPLLEASVAGYKRLVRLLLEHGAKPNTV-VGPGFTAIYNACMNGHYEVVALLL 178
                 5899**************************.999******************997 PP

  == domain 3  score: 24.7 bits;  conditional E-value: 7.3e-09
       Ank_4  12 grlelvrlLlekgadinaqdnrsGetalhiAakrgnveil 51 
                 g++e+v+lLle+ga +     ++G+++l+i a++g+ +++
  KOO23742.1 169 GHYEVVALLLEHGATVTQL-TDEGFSPLYISAQNGHMDCV 207
                 79**************998.999***************98 PP

  == domain 4  score: 14.3 bits;  conditional E-value: 1.3e-05
       Ank_4  34 sGetalhiAakrgnveilkl 53 
                  G tal+iA+++g++++++ 
  KOO23742.1 229 GGATALYIAVQNGHPDCVHQ 248
                 699**************985 PP

  == domain 5  score: -0.0 bits;  conditional E-value: 0.41
       Ank_4  24 gadinaqdnrsGetalhiAak 44 
                 g  i+ +  + G t+l iA++
  KOO23742.1 253 GCAIDPV-TEAGSTPLMIALY 272
                 5556666.67899******97 PP

  == domain 6  score: 10.8 bits;  conditional E-value: 0.00016
       Ank_4  10 i.......sgrlelvrlLlekgadinaqdnrsGetalhi 41 
                 +       + +++++r Lle ga++    ++sG+ al  
  KOO23742.1 272 YlsdiyadKPHIDCARMLLEAGASLELK-DKSGRDALGW 309
                 4555555599**************9998.*****99965 PP

>> Ank  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.9   0.0    0.0052        19      16      29 ..     101     115 ..      90     118 .. 0.76
   2 !   13.0   0.0     3e-05      0.11       4      28 ..     127     152 ..     125     154 .. 0.92
   3 !   20.7   0.1   1.1e-07   0.00041       2      31 ..     158     188 ..     158     189 .. 0.93
   4 !    8.9   0.0   0.00061       2.2       2      25 ..     191     213 ..     190     219 .. 0.88
   5 !   15.0   0.1   7.3e-06     0.026       2      25 ..     230     255 ..     229     260 .. 0.85
   6 !   15.9   0.0   3.8e-06     0.014       2      32 .]     263     301 ..     262     301 .. 0.78

  Alignments for each domain:
  == domain 1  score: 5.9 bits;  conditional E-value: 0.0052
                 HHHHHHH.TTTSTTC CS
         Ank  16 riiklLL.hGAnlna 29 
                 + ++lLL +GA++n 
  KOO23742.1 101 SELSLLLkSGADPNV 115
                 457899*99****97 PP

  == domain 2  score: 13.0 bits;  conditional E-value: 3e-05
                 BHHHHHHHHTTHHHHHHHH.TTTSTT CS
         Ank   4 TPLHlAatngkkriiklLL.hGAnln 28 
                 TPL  A+  g kr ++lLL hGA +n
  KOO23742.1 127 TPLLEASVAGYKRLVRLLLeHGAKPN 152
                 99999999999************999 PP

  == domain 3  score: 20.7 bits;  conditional E-value: 1.1e-07
                 SBBHHHHHHHHTTHHHHHHHH.TTTSTTCBT CS
         Ank   2 GnTPLHlAatngkkriiklLL.hGAnlnald 31 
                 G+T+   A++ng+ +++ lLL hGA +++l+
  KOO23742.1 158 GFTAIYNACMNGHYEVVALLLeHGATVTQLT 188
                 99****9*******************98876 PP

  == domain 4  score: 8.9 bits;  conditional E-value: 0.00061
                 SBBHHHHHHHHTTHHHHHHHHTTT CS
         Ank   2 GnTPLHlAatngkkriiklLLhGA 25 
                 G++PL + a+ng+ +++ l L GA
  KOO23742.1 191 GFSPLYISAQNGHMDCVVLCL-GA 213
                 9***************98877.76 PP

  == domain 5  score: 15.0 bits;  conditional E-value: 7.3e-06
                 SBBHHHHHHHHTTHHHHHHHH.TT.T CS
         Ank   2 GnTPLHlAatngkkriiklLL.hG.A 25 
                 G T+L +A++ng++++++ L+  G A
  KOO23742.1 230 GATALYIAVQNGHPDCVHQLIkAGcA 255
                 78*******************66843 PP

  == domain 6  score: 15.9 bits;  conditional E-value: 3.8e-06
                 SBBHHHHHH.......HHTTHHHHHHHH.TTTSTTCBTT CS
         Ank   2 GnTPLHlAa.......tngkkriiklLL.hGAnlnaldn 32 
                 G TPL++A           + +++++LL  GA+l ++d+
  KOO23742.1 263 GSTPLMIALylsdiyaDKPHIDCARMLLeAGASLELKDK 301
                 88*****856666655444466******88****99985 PP

>> Ank_3  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.2   0.0     0.054   1.9e+02       9      31 .]      95     115 ..      89     115 .. 0.75
   2 !   11.0   0.0   0.00015      0.53       4      30 ..     127     152 ..     127     153 .. 0.95
   3 !   19.4   0.0   2.9e-07     0.001       2      29 ..     158     184 ..     157     186 .. 0.92
   4 ?    4.9   0.0     0.014        52       2      22 ..     191     211 ..     190     214 .. 0.81
   5 !   15.5   0.0     5e-06     0.018       2      29 ..     230     256 ..     229     258 .. 0.90
   6 ?    5.0   0.1     0.014        49       2      28 ..     263     295 ..     262     298 .. 0.76

  Alignments for each domain:
  == domain 1  score: 3.2 bits;  conditional E-value: 0.054
       Ank_3   9 AarsgnleivkfLlenkgadvna 31 
                 A + +  e + +Ll+  gad+n+
  KOO23742.1  95 ASKKCQSE-LSLLLK-SGADPNV 115
                 44555557.99****.9****95 PP

  == domain 2  score: 11.0 bits;  conditional E-value: 0.00015
       Ank_3   4 tpLhlAarsgnleivkfLlenkgadvn 30 
                 tpL +A  +g   +v++Lle +ga +n
  KOO23742.1 127 TPLLEASVAGYKRLVRLLLE-HGAKPN 152
                 9*******************.9***99 PP

  == domain 3  score: 19.4 bits;  conditional E-value: 2.9e-07
       Ank_3   2 GetpLhlAarsgnleivkfLlenkgadv 29 
                 G t+++ A+++g++e+v +Lle +ga v
  KOO23742.1 158 GFTAIYNACMNGHYEVVALLLE-HGATV 184
                 789*******************.89986 PP

  == domain 4  score: 4.9 bits;  conditional E-value: 0.014
       Ank_3   2 GetpLhlAarsgnleivkfLl 22 
                 G +pL++ a +g+ + v ++l
  KOO23742.1 191 GFSPLYISAQNGHMDCVVLCL 211
                 89************9555544 PP

  == domain 5  score: 15.5 bits;  conditional E-value: 5e-06
       Ank_3   2 GetpLhlAarsgnleivkfLlenkgadv 29 
                 G t+L++A+ +g+++ v+ L++  g+ +
  KOO23742.1 230 GATALYIAVQNGHPDCVHQLIK-AGCAI 256
                 89********************.78776 PP

  == domain 6  score: 5.0 bits;  conditional E-value: 0.014
       Ank_3   2 GetpLhlAarsgnl.......eivkfLlenkgad 28 
                 G tpL++A+   ++       + +++Lle  ga 
  KOO23742.1 263 GSTPLMIALYLSDIyadkphiDCARMLLE-AGAS 295
                 8899**99998888887665445999999.7876 PP

>> Ank_5  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.2   0.0      0.38   1.4e+03      24      47 ..      95     118 ..      89     126 .. 0.76
   2 ?    4.5   0.0     0.013        47      11      45 ..     120     154 ..     106     161 .. 0.85
   3 !   23.1   0.0   1.9e-08   6.8e-05       1      55 [.     144     197 ..     144     197 .. 0.89
   4 !   13.2   0.0   2.4e-05     0.084       1      36 [.     177     211 ..     177     223 .. 0.91
   5 !   18.8   0.0   4.2e-07    0.0015      12      56 .]     226     270 ..     217     270 .. 0.92
   6 !   11.0   0.0   0.00012      0.42      23      50 ..     277     304 ..     274     307 .. 0.88

  Alignments for each domain:
  == domain 1  score: -0.2 bits;  conditional E-value: 0.38
       Ank_5  24 akygaadvvrlLlargadlnltds 47 
                 a++ +++ + lLl+ gad+n+ ++
  KOO23742.1  95 ASKKCQSELSLLLKSGADPNVLCK 118
                 667777888888899999999776 PP

  == domain 2  score: 4.5 bits;  conditional E-value: 0.013
       Ank_5  11 rldgggntpLhvAakygaadvvrlLlargadlnlt 45 
                 +++++ +tpL  A+ +g+ ++vrlLl++ga +n+ 
  KOO23742.1 120 DWQPFETTPLLEASVAGYKRLVRLLLEHGAKPNTV 154
                 6778888999999999999**********999976 PP

  == domain 3  score: 23.1 bits;  conditional E-value: 1.9e-08
       Ank_5   1 LlehgpadvnrldgggntpLhvAakygaadvvrlLlargadlnltdsrGltaldl 55 
                 Llehg a +n+  g g+t++ +A+ +g+ +vv lLl++ga  ++ +++G ++l +
  KOO23742.1 144 LLEHG-AKPNTVVGPGFTAIYNACMNGHYEVVALLLEHGATVTQLTDEGFSPLYI 197
                 899**.66666666677***********************************965 PP

  == domain 4  score: 13.2 bits;  conditional E-value: 2.4e-05
       Ank_5   1 LlehgpadvnrldgggntpLhvAakygaadvvrlLl 36 
                 Llehg a v  l  +g++pL ++a +g+ d+v l+l
  KOO23742.1 177 LLEHG-ATVTQLTDEGFSPLYISAQNGHMDCVVLCL 211
                 899*9.99999**********************999 PP

  == domain 5  score: 18.8 bits;  conditional E-value: 4.2e-07
       Ank_5  12 ldgggntpLhvAakygaadvvrlLlargadlnltdsrGltaldlA 56 
                 ++ gg t+L +A+ +g++d+v  L++ g++++  ++ G+t+l +A
  KOO23742.1 226 KELGGATALYIAVQNGHPDCVHQLIKAGCAIDPVTEAGSTPLMIA 270
                 57899************************************9776 PP

  == domain 6  score: 11.0 bits;  conditional E-value: 0.00012
       Ank_5  23 AakygaadvvrlLlargadlnltdsrGl 50 
                  a + + d++r+Ll+ ga+l l+d++G+
  KOO23742.1 277 YADKPHIDCARMLLEAGASLELKDKSGR 304
                 57789*********************95 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (341 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       255  (0.0142228); expected 358.6 (0.02)
Passed bias filter:                      237  (0.0132188); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.48u 0.25s 00:00:00.73 Elapsed: 00:00:00.43
# Mc/sec: 2389.07
//
Query:       KOO23743.1  [L=700]
Description: protein kinase domain-containing protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.8e-53  180.5   0.0    5.7e-53  180.0   0.0    1.3  1  Pkinase         Protein kinase domain
    1.7e-18   66.9   0.0    2.7e-18   66.2   0.0    1.2  1  Pkinase_Tyr     Protein tyrosine kinase
     0.0012   18.9   2.9     0.0074   16.2   0.1    2.7  2  APH             Phosphotransferase enzyme family
  ------ inclusion threshold ------
      0.011   15.5   0.2      0.022   14.6   0.2    1.4  1  Herpes_LP       Herpesvirus leader protein
      0.021   14.4   0.1      0.041   13.5   0.1    1.4  1  Choline_kinase  Choline/ethanolamine kinase


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  180.0   0.0   1.6e-56   5.7e-53       1     264 []     384     684 ..     384     684 .. 0.85

  Alignments for each domain:
  == domain 1  score: 180.0 bits;  conditional E-value: 1.6e-56
                 EEEEEEEEEESSEEEEEEEETTTTEEEEEEEEECHCHCHHHHHHHHHHHHHHHHHS......CTTB--EEEEEEESSEEEEEEE--TTEBHHHHHH... CS
     Pkinase   1 yekleklGeGsfGkVykaveketgkivAvKkikkekakkkkekkvlrEikilkklk......hpnivrlyevfeekdelylvleyveggeladlle... 90 
                 y+++e lG+ +f+k +++++ +tg++v+vK+ik++k+  ++    l E+ +l  lk      + ++v++y++f++k++l++v e+++ + l ++ +   
  KOO23743.1 384 YQVKEFLGSAAFSKAVQCLDLHTGEMVCVKIIKNNKDFFDQ---SLDEVMLLDYLKqhdpddSHHVVHIYDFFYHKEHLFIVCELLRDN-LYEFSKynr 478
                 78999****************************99888755...58888877777663355568***********************55.666655555 PP

                 ...HHSS--HHHHHHHHHHHHHHHHHHHHTTEE-SS-SGGGEEEETTTE..EEE-SGTTSEESSSSCSBCTTTSCGGGS-HHHHTTSCBSHHHHHHHHH CS
     Pkinase  91 ...rkgslseeeakkiakqilegleylHskgiiHrDlKpeNiLidekge..lKitDFGlakelessskltsfvgtseYlAPEvlkeneyskkvDvWslG 184
                     +  ++  ++++iakq le+l+++H+ ++iH+DlKpeNiLi++     +K++DFG ++ l+ +  l+s+v ++ Y+APEv+ + +y+ k+D+WslG
  KOO23743.1 479 eqgGEPYFTLPRLRRIAKQCLEALDFVHKLNLIHCDLKPENILIKSYSRceVKVIDFGSSCYLTDH--LSSYVQSRSYRAPEVILGLQYDGKIDIWSLG 575
                 54334458888**********************************433345*************96..7****************************** PP

                 HHHHHHHHSS-STTTSSHHHHHHHHHHTHHHHHHHCT..SHH...HHHTTS..................................-HHHHHHHHHHT-S CS
     Pkinase 185 vilyelltgkppfsgekgkekvekeldqlekilkilg..etkeklpeasei..................................seeakdllkkllkk 247
                  il+elltg  +f+    +++v+++l +   i  i+g  ++ +  + +++                                   ++ +++++ +ll+ 
  KOO23743.1 576 AILAELLTGYVLFQ----NDSVASMLAR---ISAIVGpfPEAFLAKGRHSHkyfvdgmvyerdrdeqpfllrpkqtslkhrchtdDKLFLSFVGSLLRI 667
                 **************....3334445555...6777775522222222222256789999*************************9999*********** PP

                 SGCCSTTHHHHHTSGGG CS
     Pkinase 248 dpkkRltaeellqhpyl 264
                 dp++R+tae++lqhp+l
  KOO23743.1 668 DPEERPTAEQALQHPWL 684
                 ****************7 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.2   0.0   7.4e-22   2.7e-18       3     210 ..     386     592 ..     384     603 .. 0.79

  Alignments for each domain:
  == domain 1  score: 66.2 bits;  conditional E-value: 7.4e-22
                  EEEEEEEESSEEEEEEEEETTTTSSEEEEEEEEESTTSSHHHHHHHHHHHHHHHTS.-B.....TTB--EEEEEESSSSEEEEEE--TTE..BHHHHH CS
  Pkinase_Tyr   3 lgkklGeGafGkVvegtlkgekekkevkVavKtlkeeateeekeelleeakimkkl.kh.....pnivkllgvctkeepllivteyvkgG..dLlkfL 92 
                  +++ lG+ af+k v++       ++ + V vK++k++++    ++ l+e+ ++  l +h     +++v+++ + +++e+l+iv e+++ +  +++k+ 
   KOO23743.1 386 VKEFLGSAAFSKAVQCLDL----HTGEMVCVKIIKNNKDFF--DQSLDEVMLLDYLkQHdpddsHHVVHIYDFFYHKEHLFIVCELLRDNlyEFSKYN 477
                  67889999**999999877....78899******8776654..66677777776665553333379*********************97644566666 PP

                  HHT.CTTTSBHHHHHHHHHHHHHHHHHHHHTTEEEST-SGGGEEEEE..TTEEEE-STTTHEETTTSSEEEETTSSTSGGGGS-HHHHHHSEEEHHHH CS
  Pkinase_Tyr  93 rkk.ekekltlkdllsfalqvAkGmeyLeskklvHrdlaarNvLlse..nkvvkisDfGLardiekddeyvkkeeaklpvkWmapEslkekkftsksD 187
                  r++  ++ +tl +l ++a q  ++++++++ +l+H dl   N+L+++  +  vk+ DfG +  ++  d+    ++   +  + apE++   ++  k D
   KOO23743.1 478 REQgGEPYFTLPRLRRIAKQCLEALDFVHKLNLIHCDLKPENILIKSysRCEVKVIDFGSSCYLT--DHL---SSYVQSRSYRAPEVILGLQYDGKID 570
                  665556779*************************************8445589******999983..222...2233345799*************** PP

                  HHHHHHHHHHHHTTSSGTTTTSH CS
  Pkinase_Tyr 188 vWsfGvllwEiftlgespypglk 210
                  +Ws G +l E++t g   +++ +
   KOO23743.1 571 IWSLGAILAELLT-GYVLFQNDS 592
                  ***********99.665555544 PP

>> APH  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.7   0.7     0.056     2e+02      47     150 ..     190     345 ..     174     377 .. 0.53
   2 !   16.2   0.1   2.1e-06    0.0074     144     198 ..     487     540 ..     397     542 .. 0.85

  Alignments for each domain:
  == domain 1  score: 1.7 bits;  conditional E-value: 0.056
                 HHHTT-..B--B-CTTBS-EEETTE..........EEEEEE----EE-SSHHHHHHHHHHHHHHHHHHCCHHCH......................-ST CS
         APH  47 Lakagv..pvPevlagdtddeeigl..........lfalieyvpgrsllrklsaaqlpellealgeflaalhqv.....................dpaa 112
                  +++g+  ++P +  ++ +++              ++a+ +   + ++++   a+ +++ l+al+e   ++ +v                     +   
  KOO23743.1 190 ASASGAaaTAPDPRVLCSSNGAGVKtgcapskaaePAAATPAATPSTPSD---AEATKARLRALHEQVMQMEAVvtagqatrphgdaaevmgaakP--- 282
                 33444466566666555454444446778666555555555555555555...9999999999999999999994444444444433333333330... PP

                 TTB-.............................SHHCHTCCHHHHHHCHHHCCCGCCTCCHHHHHHH CS
         APH 113 lpla.............................dflaqdlellrqlesatarllaselldlleelee 150
                    +                                ++ + ++  + +a a + ++e+++ +e++++
  KOO23743.1 283 ---TaegvpttaptadvlttapgnggadatsaeEAKEKGVLDAKARLAALAEQSDPEVDP-YEKATR 345
                 ...033333332222333233322222222222222233333344444444555555555.555555 PP

  == domain 2  score: 16.2 bits;  conditional E-value: 2.1e-06
                 HHHHHHHHHHHHHHHH--SSS-EEEE-SS-SGGGEEEC....TTEEEEE---TT-EE CS
         APH 144 lleeleeqvlaalaallpgelptvllHgDlhpgNllvd..pddgrvtGviDfedagl 198
                  l +l++ ++ ++++ l+   +  l+H+Dl+p N+l++  ++      viDf+ +++
  KOO23743.1 487 TLPRLRR-IAKQCLEALDFVHKLNLIHCDLKPENILIKsySRCEV--KVIDFGSSCY 540
                 4677888.7788888888789999**************7655444..5****98876 PP

>> Herpes_LP  Herpesvirus leader protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.6   0.2     6e-06     0.022      37      95 ..     240     298 ..     213     314 .. 0.77

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 6e-06
   Herpes_LP  37 trggqeprrvrrrvlvqqeeevvsgspsgprgdrsevpgparpgppgigpegplgqllr 95 
                 +   +   r  +  ++q e  v +g  + p+gd +ev g a+p   g+    p  ++l 
  KOO23743.1 240 AEATKARLRALHEQVMQMEAVVTAGQATRPHGDAAEVMGAAKPTAEGVPTTAPTADVLT 298
                 33333333444444566677777899**********************99999988875 PP

>> Choline_kinase  Choline/ethanolamine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.1   1.2e-05     0.041     140     176 ..     503     540 ..     465     545 .. 0.77

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 1.2e-05
                     CHGG-EEEE-S--SGGGEEE.-.CTTEEEE--GTT-EE CS
  Choline_kinase 140 elespvvfcHnDlqegNillnk.eekklvlIDFEYagy 176
                     ++ +++++ H+Dl ++Nil ++ ++ ++ +IDF  ++y
      KOO23743.1 503 DFVHKLNLIHCDLKPENILIKSySRCEVKVIDFGSSCY 540
                     455679999**********97625668******88887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (700 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       501  (0.0279436); expected 358.6 (0.02)
Passed bias filter:                      321  (0.017904); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.61u 0.25s 00:00:00.86 Elapsed: 00:00:00.42
# Mc/sec: 4994.40
//
Query:       KOO23744.1  [L=157]
Description: hypothetical protein Ctob_004612 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.017   14.2   0.3      0.021   13.9   0.3    1.1  1  UPF0564   Uncharacterised protein family UPF0564


Domain annotation for each model (and alignments):
>> UPF0564  Uncharacterised protein family UPF0564
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.3   1.2e-06     0.021     123     166 ..     100     144 ..      90     152 .. 0.87

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 1.2e-06
     UPF0564 123 kpvPkslkvkllkqkeqeqeekrkkrvekrkeellkss.klpprm 166
                 kp+P+s++  ++k ke+ ++  r++  ++ ++++++++  lpp+ 
  KOO23744.1 100 KPIPASTSGLRFKSKEEKEKAAREEAAKMMAMQMQAMMpGLPPAA 144
                 8******************************99987751466655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (157 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       845  (0.0471303); expected 358.6 (0.02)
Passed bias filter:                      596  (0.0332422); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.26s 00:00:00.65 Elapsed: 00:00:00.39
# Mc/sec: 1192.88
//
Query:       KOO23745.1  [L=368]
Description: cyclopropane-fatty-acyl-phospholipid synthase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    5.4e-13   48.9   0.0    8.4e-13   48.2   0.0    1.2  1  CMAS             Mycolic acid cyclopropane synthetase
    2.3e-08   34.0   0.0    3.5e-08   33.5   0.0    1.2  1  Methyltransf_23  Methyltransferase domain
    2.8e-07   30.5   0.0    4.6e-07   29.8   0.0    1.3  1  Methyltransf_31  Methyltransferase domain
    1.4e-06   28.9   0.0    2.6e-06   28.1   0.0    1.5  1  Methyltransf_12  Methyltransferase domain
    1.9e-06   28.5   0.0    3.9e-06   27.5   0.0    1.5  1  Methyltransf_25  Methyltransferase domain
    3.4e-05   24.4   0.0    7.6e-05   23.3   0.0    1.6  1  Methyltransf_11  Methyltransferase domain
    0.00027   20.5   0.0    0.00044   19.8   0.0    1.3  1  Methyltransf_4   Putative methyltransferase
    0.00058   19.4   0.0      0.001   18.7   0.0    1.3  1  MTS              Methyltransferase small domain
      0.003   17.4   0.0     0.0044   16.8   0.0    1.2  1  DUF938           Protein of unknown function (DUF938)


Domain annotation for each model (and alignments):
>> CMAS  Mycolic acid cyclopropane synthetase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.2   0.0   4.2e-16   8.4e-13      14     266 ..      81     349 ..      70     353 .. 0.86

  Alignments for each domain:
  == domain 1  score: 48.2 bits;  conditional E-value: 4.2e-16
                 HTS-HHHHCTTS-TT---S----SS......TT--HHHHHHHHHHHHHTTTT--...TT-EEEEES-TTSHHHHHHHHHH.--EEEEEES-HHHHHHHH CS
        CMAS  14 YDlsndffalfldptmtYsCAyfer......ddmtLeeAqlaKldlileklelk...pGmtlLdiGcGWGslvrravery.dvkvvglTlSkeqaklak 102
                 Y    +ff l l+p ++Ys   + +        + L +A    + +  ek++l    +G ++L++GcGWG++  + ++r+     ++   S  q +  +
  KOO23745.1  81 YANDPEFFLLHLGPRLKYSACEWPEgsekdgFAAGLGKAEDYTVAIYQEKAGLAslpAGARVLELGCGWGAISLTNAARFpHLTFISFSNSPPQIEFIR 179
                 666679*************999998776655456799999999999999987542228***************9999999457899999999******* PP

                 HHHHTS-SSS-EEEEES-GGG---............--SEEEEES-GGGTSGGGHHHHHHHHHHHS-TT-EEEEEEEEE--HHHHHCTTCCCHHHHHHT CS
        CMAS 103 krvdeldlerkvevklldyedlde............kvdrvvsvgafehvgkenydtffkklkkllkedGllllhtitslhkkelaerglklkfidkei 189
                 +r +e+++  + +v++ dy  + +             +d+ ++++ +eh   +n  +  + +   lk++  + +h++  ++ + l     + +++ ++ 
  KOO23745.1 180 ARAKERGI-TNLTVSVEDYALFVDpskskvapagapLFDAAIAIETVEH--AQNIGELLRGVALRLKPGAKFFVHSLLHQSCSYLL---SPDTWMGRNF 272
                 *******6.5689******999877667777777766999999999999..57999********************9988777776...4559****** PP

                 STTS---BHHHHHHHHHHTT-EEEEEEE-.HHHHHHHHHHHHHHHHHTHHHHHHHSHHHHHHHHHHHHHHHHHHHHTT CS
        CMAS 190 FPgGelpsieeieeeiseagftvvdvesl.rahYakTLkaWaealqenkdeaialvseevarmyelYLagcaeaFrkg 266
                 + gG +  +++  +  +  ++ + dv+ + +  Y+kT  aW e  ++nk + ++ ++  +++ ++++  + aeaF ++
  KOO23745.1 273 YTGGSILALNSYFH-LAPKDLYLADVQPIsGVGYMKTSLAWLELQEKNKARFVKKYGSDFYEGFRMFYIAVAEAFGAN 349
                 *****999998876.78899*******983589*******************************99999999999765 PP

>> Methyltransf_23  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.5   0.0   1.8e-11   3.5e-08      19     121 ..     135     254 ..     120     296 .. 0.81

  Alignments for each domain:
  == domain 1  score: 33.5 bits;  conditional E-value: 1.8e-11
  Methyltransf_23  19 klraggrvLdiGcGtG.illevlrengf.svtgvDlspeaveiae...............kakkaqkdqfdeqeaaepqgkfdlIvlrevlehv 95 
                       l+ag+rvL++GcG G i l  ++++++ +++ +  sp ++e ++               +++  + d+  +  a+  +  fd ++++e+ eh 
       KOO23745.1 135 SLPAGARVLELGCGWGaISLTNAARFPHlTFISFSNSPPQIEFIRarakergitnltvsvEDYALFVDPSKSKVAPAGAPLFDAAIAIETVEHA 228
                      47899***********6666666666667777888888888888899999999999888877777777776667777778************** PP

  Methyltransf_23  96 pdppellrqiatllkpgGylllsepl 121
                      ++  ellr +a  lkpg+ ++++  l
       KOO23745.1 229 QNIGELLRGVALRLKPGAKFFVHSLL 254
                      *****************999988754 PP

>> Methyltransf_31  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.8   0.0   2.3e-10   4.6e-07       4     111 ..     139     252 ..     137     275 .. 0.88

  Alignments for each domain:
  == domain 1  score: 29.8 bits;  conditional E-value: 2.3e-10
  Methyltransf_31   4 glrvlDlGCGtGeltfelaeelgpkaevvGiDiseeaielArenaqklgldnveFeqgdiee.leklled......ekfDlilsnevlnaladp 90 
                      g rvl+lGCG G++++  a   +p+ +++++ +s+  ie+ r++a++ g++n++++++d     + + ++        fD  ++ e++ +  + 
       KOO23745.1 139 GARVLELGCGWGAISLTNA-ARFPHLTFISFSNSPPQIEFIRARAKERGITNLTVSVEDYALfVDPSKSKvapagaPLFDAAIAIETVEHAQNI 231
                      679***************9.6689***********************************9986554333367788888**************** PP

  Methyltransf_31  91 dkileeiervlkpggillied 111
                       + l+++   lkpg  + + +
       KOO23745.1 232 GELLRGVALRLKPGAKFFVHS 252
                      ************999998766 PP

>> Methyltransf_12  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.1   0.0   1.3e-09   2.6e-06       1      99 []     143     248 ..     143     248 .. 0.86

  Alignments for each domain:
  == domain 1  score: 28.1 bits;  conditional E-value: 1.3e-09
  Methyltransf_12   1 LeiGcGtGsllralleklpdieytgvDispsaiedakeklakrennnnnnvelealdlldldgg........ssfDlvvasnvlhhlkdirevl 86 
                      Le+GcG G+++   ++++p+++++    sp +ie  +++ ++r+   n  v +e+  l+ ++++          fD+ +a+++++h ++i e+l
       KOO23745.1 143 LELGCGWGAISLTNAARFPHLTFISFSNSPPQIEFIRARAKERGI-TNLTVSVEDYALFVDPSKskvapagaPLFDAAIAIETVEHAQNIGELL 235
                      8*****************999999999999999888888777775.4456666666665555557899**9999******************** PP

  Methyltransf_12  87 dnirklLkpgGrl 99 
                      + ++  Lkpg+++
       KOO23745.1 236 RGVALRLKPGAKF 248
                      **********975 PP

>> Methyltransf_25  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.5   0.0   1.9e-09   3.9e-06       1      96 [.     142     245 ..     142     245 .. 0.83

  Alignments for each domain:
  == domain 1  score: 27.5 bits;  conditional E-value: 1.9e-09
                      EEEET-TTSHHHHHHHCTSTSSEEEEEESSHHHHHHHHHHHHHTTT.TEEEEESBC........CG.BSSSTTTEEEEEEESTGGGSSHHHHHH CS
  Methyltransf_25   1 vLdlGcGtGrltlalakrlgkakvtgvDiseemleaareraeeegl.nvefvqgda........ed.lpfedgsfDlvvssgalhhlsdedlek 84 
                      vL+lGcG G ++l  a+r+++ +++ +  s+ ++e +r+ra+e+g+ n+++ + d         ++  p  +  fD+ +++ +++h   +++ +
       KOO23745.1 142 VLELGCGWGAISLTNAARFPHLTFISFSNSPPQIEFIRARAKERGItNLTVSVEDYalfvdpskSKvAPAGAPLFDAAIAIETVEHA--QNIGE 233
                      9******************8899999999***************999999988888444443221123456669******9889995..58999 PP

                      HHHHHHHHEEEE CS
  Methyltransf_25  85 alkeiarvLkpg 96 
                      +l+ +a  Lkpg
       KOO23745.1 234 LLRGVALRLKPG 245
                      ***999999998 PP

>> Methyltransf_11  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.3   0.0   3.8e-08   7.6e-05       1      96 []     143     250 ..     143     250 .. 0.85

  Alignments for each domain:
  == domain 1  score: 23.3 bits;  conditional E-value: 3.8e-08
                      EEET-TTSHHHHHHHHTT..SEEEEEES-HHHHHHHHHHCCHHT-.EEEETTEECC........CT.SS-TT-EEEEEEES-CCC-CCHHHHHH CS
  Methyltransf_11   1 LdvGcGtGrlaealakrg..arvvgvDlskemlklakekaseegl.kvefvvadae........kl.pfednsfDlvvssevlhhvedpekalk 82 
                      L++GcG G+++   a r+   + + +  s+ +++  +++a+e+g+ ++++ v+d          k+ p     fD+ ++ e+++h ++  ++l+
       KOO23745.1 143 LELGCGWGAISLTNAARFphLTFISFSNSPPQIEFIRARAKERGItNLTVSVEDYAlfvdpsksKVaPAGAPLFDAAIAIETVEHAQNIGELLR 236
                      89**********9998888999**********************9966664444443333332255588888********************** PP

                      HHHHHEEEEEEEEE CS
  Methyltransf_11  83 eiaRvLkpgGllvi 96 
                       +a  Lkpg ++++
       KOO23745.1 237 GVALRLKPGAKFFV 250
                      *********99985 PP

>> Methyltransf_4  Putative methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.8   0.0   2.2e-07   0.00044       5      59 ..     142     196 ..     138     206 .. 0.93

  Alignments for each domain:
  == domain 1  score: 19.8 bits;  conditional E-value: 2.2e-07
                     EEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHCTTSSEEEEES- CS
  Methyltransf_4   5 vleiGcGkGeflvalAkknPdknflGiEirvkvvakvlkkiealelkNlrilrgd 59 
                     vle+GcG G + ++ A ++P+ +f+    + + ++ + +++++++++Nl +   d
      KOO23745.1 142 VLELGCGWGAISLTNAARFPHLTFISFSNSPPQIEFIRARAKERGITNLTVSVED 196
                     89***********************************************998776 PP

>> MTS  Methyltransferase small domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.7   0.0     5e-07     0.001      32      88 ..     139     196 ..     131     209 .. 0.82

  Alignments for each domain:
  == domain 1  score: 18.7 bits;  conditional E-value: 5e-07
                 CSEEEEET-TTSHHHHHHHHHTTC.EEEEEESBHHHHHHHHHHHHHTTGC.EEEEE-S CS
         MTS  32 sgkvlDlGcGaGvlgaalakespeaevtlvdvdarAlesakenleankle.vevvasd 88 
                   +vl lGcG+G+++++ a++ p+++   + ++   +e+ ++ +++ ++  ++v  +d
  KOO23745.1 139 GARVLELGCGWGAISLTNAARFPHLTFISFSNSPPQIEFIRARAKERGITnLTVSVED 196
                 568**********************998899999999999999999888765555554 PP

>> DUF938  Protein of unknown function (DUF938)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   0.0   2.2e-06    0.0044      26     137 ..     139     248 ..     130     259 .. 0.77

  Alignments for each domain:
  == domain 1  score: 16.8 bits;  conditional E-value: 2.2e-06
      DUF938  26 tervLEiasGtGqHAvffApalpnlkwqpsdqdeelresiaawadelalsnlkpPleldvtaevapvereappapasi.dailsinllHispwsavegl 123
                 + rvLE++ G G      A+++p+l++++  + + + e i+a a+e +++nl+  +e d +  v p ++++ pa a++ da ++i ++     + +  l
  KOO23745.1 139 GARVLELGCGWGAISLTNAARFPHLTFISFSNSPPQIEFIRARAKERGITNLTVSVE-DYALFVDPSKSKVAPAGAPLfDAAIAIETVE--HAQNIGEL 234
                 458*************************9888887889***************9998.6666667777777777776437777777653..34445556 PP

      DUF938 124 fagagellkkkavl 137
                 ++g+   lk++a +
  KOO23745.1 235 LRGVALRLKPGAKF 248
                 77766666666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (368 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       285  (0.015896); expected 358.6 (0.02)
Passed bias filter:                      281  (0.0156729); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.46u 0.26s 00:00:00.72 Elapsed: 00:00:00.41
# Mc/sec: 2704.58
//
Query:       KOO23746.1  [L=691]
Description: ankyrin repeat and socs box protein 13-like protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    8.4e-35  119.2  10.6    3.2e-13   50.1   1.4    2.9  3  Ank_2     Ankyrin repeats (3 copies)
      1e-20   73.8   2.9    1.9e-09   37.8   0.3    3.2  2  Ank_4     Ankyrin repeats (many copies)
    3.7e-20   71.7   4.2    5.8e-08   32.9   0.0    3.7  3  Ank_5     Ankyrin repeats (many copies)
    8.6e-19   67.1  12.5      1e-06   28.9   0.0    5.4  5  Ank       Ankyrin repeat
      9e-13   47.2   5.4      0.011   16.2   0.0    4.9  4  Ank_3     Ankyrin repeat
      2e-07   30.6   9.1     0.0046   17.0   0.7    3.8  3  TPR_2     Tetratricopeptide repeat
      3e-07   30.0   5.9      0.001   18.8   0.7    3.5  3  TPR_1     Tetratricopeptide repeat
    3.7e-05   23.9   4.8    5.1e-05   23.5   0.8    2.7  2  TPR_12    Tetratricopeptide repeat
      9e-05   22.1   0.1     0.0002   21.0   0.1    1.6  1  TPR_11    TPR repeat
     0.0012   19.5   0.6     0.0012   19.5   0.6    2.8  2  TPR_16    Tetratricopeptide repeat
     0.0012   18.7   0.9       0.47   10.6   0.1    2.9  2  TPR_7     Tetratricopeptide repeat
     0.0044   17.5   0.8      0.018   15.5   0.8    2.2  1  TPR_19    Tetratricopeptide repeat
     0.0071   17.1   3.2       0.99   10.4   0.5    3.3  2  TPR_14    Tetratricopeptide repeat
  ------ inclusion threshold ------
      0.022   14.7   1.1       0.12   12.3   0.1    2.7  2  TPR_10    Tetratricopeptide repeat
      0.077   13.2   0.0       0.22   11.7   0.0    1.7  1  Aha1_N    Activator of Hsp90 ATPase, N-terminal
      0.095   13.0   0.3       0.35   11.2   0.3    2.0  1  TPR_8     Tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> Ank_2  Ankyrin repeats (3 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.7   0.1   6.6e-15   7.4e-12      22      78 ..      42     107 ..      14     112 .. 0.69
   2 !   50.1   1.4   2.8e-16   3.2e-13      13      78 ..      98     174 ..      96     179 .. 0.82
   3 !   45.5   0.3   7.8e-15   8.8e-12       1      72 [.     120     200 ..     120     206 .. 0.84

  Alignments for each domain:
  == domain 1  score: 45.7 bits;  conditional E-value: 6.6e-15
       Ank_2  22 pn..k.ngktaLhyAakngnleivklLleh...ad...ndgrtpLhyAarsghleivklLlekgad 78 
                 ++  + +g+t+Lh+A+++g+ ++v+lLl +   +d   ++g tpL++A+++g   ++ lL++  a 
  KOO23746.1  42 VDyaDqDGMTPLHAACQEGHDQCVELLLRAgarVDstsKHGLTPLIIACENGWHGCAHLLVKATAA 107
                 2233259*********************977674455699***********977******965554 PP

  == domain 2  score: 50.1 bits;  conditional E-value: 2.8e-16
       Ank_2  13 vklLl.egadpn..k..ngktaLhyAakngnleivklLleh......adndgrtpLhyAarsghleivklLlekgad 78 
                  +lL+ + a ++  +  n  taLh A+ ng +e+v+lLl++      +d+dg tpL++Aa +gh+e+vklL+  gad
  KOO23746.1  98 AHLLVkATAAIDkaEnlNAATALHGACLNGAVECVELLLQArallnvVDKDGATPLILAAHQGHIECVKLLVGAGAD 174
                 5566654555555425799********************9667867788***********************77887 PP

  == domain 3  score: 45.5 bits;  conditional E-value: 7.8e-15
       Ank_2   1 LhlAakngnlelvklLl.egadpn..k.ngktaLhyAakngnleivklLleh.....adndgrtpLhyAarsghleivklL 72 
                 Lh A++ng+ e+v+lLl + a +n  + +g t+L++Aa++g++e+vklL+ +     ++++g+ +  +A   gh+ ++k+L
  KOO23746.1 120 LHGACLNGAVECVELLLqARALLNvvDkDGATPLILAAHQGHIECVKLLVGAgadelVEYEGKIAFELAEDAGHESCAKVL 200
                 899****999******97666666653599********************76645566699********999**9999998 PP

>> Ank_4  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.0   0.1   1.4e-11   1.6e-08       1      54 [.      49     101 ..      49     102 .. 0.91
   2 !   37.8   0.3   1.7e-12   1.9e-09       3      55 .]     118     169 ..     116     169 .. 0.97

  Alignments for each domain:
  == domain 1  score: 35.0 bits;  conditional E-value: 1.4e-11
       Ank_4   1 eltaLhyaaisgrlelvrlLlekgadinaqdnrsGetalhiAakrgnveilklL 54 
                 ++t+Lh+a+++g+ ++v+lLl  ga ++ + ++ G+t+l+iA+ +g   +++lL
  KOO23746.1  49 GMTPLHAACQEGHDQCVELLLRAGARVDST-SKHGLTPLIIACENGWHGCAHLL 101
                 69*******************99*******.999***********966666665 PP

  == domain 2  score: 37.8 bits;  conditional E-value: 1.7e-12
       Ank_4   3 taLhyaaisgrlelvrlLlekgadinaqdnrsGetalhiAakrgnveilklLl 55 
                 taLh a+  g +e+v+lLl+ +a +n + +++G t+l+ Aa  g++e++klL+
  KOO23746.1 118 TALHGACLNGAVECVELLLQARALLNVV-DKDGATPLILAAHQGHIECVKLLV 169
                 89**************************.**********************96 PP

>> Ank_5  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.9   0.0   5.2e-11   5.8e-08       2      56 .]      37      89 ..      36      93 .. 0.94
   2 !   31.0   0.9     2e-10   2.2e-07      12      56 .]     112     156 ..     101     156 .. 0.89
   3 !   26.6   0.1   4.8e-09   5.4e-06       1      44 [.     135     175 ..     135     188 .. 0.80

  Alignments for each domain:
  == domain 1  score: 32.9 bits;  conditional E-value: 5.2e-11
       Ank_5  2 lehgpadvnrldgggntpLhvAakygaadvvrlLlargadlnltdsrGltaldlA 56
                l++   +v++ d++g+tpLh A+  g+ ++v+lLl  ga  + t ++Glt+l +A
  KOO23746.1 37 LDC--PSVDYADQDGMTPLHAACQEGHDQCVELLLRAGARVDSTSKHGLTPLIIA 89
                555..789999******************************************98 PP

  == domain 2  score: 31.0 bits;  conditional E-value: 2e-10
       Ank_5  12 ldgggntpLhvAakygaadvvrlLlargadlnltdsrGltaldlA 56 
                 ++ +  t+Lh A+ +ga ++v+lLl  +a ln+ d++G t+l lA
  KOO23746.1 112 ENLNAATALHGACLNGAVECVELLLQARALLNVVDKDGATPLILA 156
                 445556************************************998 PP

  == domain 3  score: 26.6 bits;  conditional E-value: 4.8e-09
       Ank_5   1 LlehgpadvnrldgggntpLhvAakygaadvvrlLlargadlnl 44 
                 Ll+++ a +n  d++g tpL++Aa++g+ ++v+lL+  gad   
  KOO23746.1 135 LLQAR-ALLNVVDKDGATPLILAAHQGHIECVKLLVGAGAD--E 175
                 78999.999999999*********************44444..3 PP

>> Ank  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.9   0.0   9.1e-10     1e-06       1      29 [.      48      77 ..      48      80 .. 0.90
   2 !    8.9   0.6     0.002       2.2       1      23 [.      81     104 ..      81     118 .. 0.65
   3 !   13.4   0.3   7.2e-05     0.081       4      32 .]     118     147 ..     117     147 .. 0.90
   4 !   20.3   0.1   4.6e-07   0.00052       1      26 [.     148     174 ..     148     177 .. 0.92
   5 ?   -0.8   0.0       2.3   2.5e+03       1       7 [.     510     516 ..     510     522 .. 0.87

  Alignments for each domain:
  == domain 1  score: 28.9 bits;  conditional E-value: 9.1e-10
                TSBBHHHHHHHHTTHHHHHHHH.TTTSTTC CS
         Ank  1 dGnTPLHlAatngkkriiklLL.hGAnlna 29
                dG+TPLH A+++g+ ++++lLL  GA +++
  KOO23746.1 48 DGMTPLHAACQEGHDQCVELLLrAGARVDS 77
                9*********************77997776 PP

  == domain 2  score: 8.9 bits;  conditional E-value: 0.002
                 TSBBHHHHHH...HHTTHHHHHHHH.T CS
         Ank   1 dGnTPLHlAa...tngkkriiklLL.h 23 
                 +G TPL +A+   +   + +++lL+  
  KOO23746.1  81 HGLTPLIIACengW---HGCAHLLVkA 104
                 699*******5554...55***99832 PP

  == domain 3  score: 13.4 bits;  conditional E-value: 7.2e-05
                 BHHHHHHHHTTHHHHHHHH.TTTSTTCBTT CS
         Ank   4 TPLHlAatngkkriiklLL.hGAnlnaldn 32 
                 T+LH A+ ng +++++lLL  +A ln +d+
  KOO23746.1 118 TALHGACLNGAVECVELLLqARALLNVVDK 147
                 9***99*9999********55899999985 PP

  == domain 4  score: 20.3 bits;  conditional E-value: 4.6e-07
                 TSBBHHHHHHHHTTHHHHHHHH.TTTS CS
         Ank   1 dGnTPLHlAatngkkriiklLL.hGAn 26 
                 dG TPL lAa+ g+ +++klL+  GA+
  KOO23746.1 148 DGATPLILAAHQGHIECVKLLVgAGAD 174
                 899*******************77787 PP

  == domain 5  score: -0.8 bits;  conditional E-value: 2.3
                 TSBBHHH CS
         Ank   1 dGnTPLH 7  
                 +G+T+ H
  KOO23746.1 510 NGYTARH 516
                 7*****9 PP

>> Ank_3  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.0   9.7e-06     0.011       1      29 [.      48      75 ..      48      77 .. 0.91
   2 !    8.6   0.1    0.0029       3.3       1      23 [.      81     103 ..      81     110 .. 0.81
   3 !    8.4   0.2    0.0034       3.8       4      26 ..     118     139 ..     115     144 .. 0.86
   4 !   13.0   0.0   0.00011      0.12       1      28 [.     148     174 ..     148     176 .. 0.93

  Alignments for each domain:
  == domain 1  score: 16.2 bits;  conditional E-value: 9.7e-06
       Ank_3  1 nGetpLhlAarsgnleivkfLlenkgadv 29
                +G+tpLh A+  g+   v++Ll+  ga v
  KOO23746.1 48 DGMTPLHAACQEGHDQCVELLLR-AGARV 75
                69*************99******.78866 PP

  == domain 2  score: 8.6 bits;  conditional E-value: 0.0029
       Ank_3   1 nGetpLhlAarsgnleivkfLle 23 
                 +G tpL +A+++g +  +++L++
  KOO23746.1  81 HGLTPLIIACENGWHGCAHLLVK 103
                 79***********9987888887 PP

  == domain 3  score: 8.4 bits;  conditional E-value: 0.0034
       Ank_3   4 tpLhlAarsgnleivkfLlenkg 26 
                 t+Lh A+++g +e v++Ll+   
  KOO23746.1 118 TALHGACLNGAVECVELLLQ-AR 139
                 9******************9.44 PP

  == domain 4  score: 13.0 bits;  conditional E-value: 0.00011
       Ank_3   1 nGetpLhlAarsgnleivkfLlenkgad 28 
                 +G tpL lAa++g++e vk+L+   gad
  KOO23746.1 148 DGATPLILAAHQGHIECVKLLVG-AGAD 174
                 699*******************9.7988 PP

>> TPR_2  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.0   0.7   4.1e-06    0.0046       7      31 ..     310     334 ..     308     335 .. 0.93
   2 !    9.7   0.0   0.00089         1       3      32 ..     346     375 ..     344     375 .. 0.95
   3 !    7.2   0.4    0.0054         6       2      29 ..     379     406 ..     378     408 .. 0.92

  Alignments for each domain:
  == domain 1  score: 17.0 bits;  conditional E-value: 4.1e-06
       TPR_2   7 lGlayyklgdyeeAleafekAleld 31 
                  ++ ++++g+  eA+e++e+Al+ld
  KOO23746.1 310 KANMLFAKGKITEAAELYERALQLD 334
                 6899********************9 PP

  == domain 2  score: 9.7 bits;  conditional E-value: 0.00089
       TPR_2   3 alynlGlayyklgdyeeAleafekAleldP 32 
                 ++ nl+ + +k+ ++ +A+  ++ A +l+P
  KOO23746.1 346 LHSNLAACRLKQRRWRDAVSECDSACALYP 375
                 799*************************99 PP

  == domain 3  score: 7.2 bits;  conditional E-value: 0.0054
       TPR_2   2 ealynlGlayyklgdyeeAleafekAle 29 
                 +al+++++a ++l d+e Al++ + A +
  KOO23746.1 379 KALFRRAQAKRHLCDPEGALQDAQLAYK 406
                 69*******************9998865 PP

>> TPR_1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.8   0.7     9e-07     0.001       7      31 ..     310     334 ..     308     335 .. 0.94
   2 !    6.9   0.0    0.0052       5.8       2      32 ..     345     375 ..     344     375 .. 0.89
   3 ?    5.3   0.1     0.017        19       2      25 ..     379     402 ..     378     406 .. 0.91

  Alignments for each domain:
  == domain 1  score: 18.8 bits;  conditional E-value: 9e-07
                 HHHHHHHTT-HHHHHHHHHHHHHHS CS
       TPR_1   7 lGnayfklgkydeAleyyekALeln 31 
                 ++n++f +gk  eA e ye+AL+l+
  KOO23746.1 310 KANMLFAKGKITEAAELYERALQLD 334
                 89**********************9 PP

  == domain 2  score: 6.9 bits;  conditional E-value: 0.0052
                 HHHHHHHHHHHHTT-HHHHHHHHHHHHHHST CS
       TPR_1   2 kalynlGnayfklgkydeAleyyekALelnP 32 
                   + nl+++ +k+ ++ +A+  ++ A  l+P
  KOO23746.1 345 VLHSNLAACRLKQRRWRDAVSECDSACALYP 375
                 6799***************998888888877 PP

  == domain 3  score: 5.3 bits;  conditional E-value: 0.017
                 HHHHHHHHHHHHTT-HHHHHHHHH CS
       TPR_1   2 kalynlGnayfklgkydeAleyye 25 
                 kal+++++a ++l +++ Al++ +
  KOO23746.1 379 KALFRRAQAKRHLCDPEGALQDAQ 402
                 79******************9976 PP

>> TPR_12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.5   0.8   4.6e-08   5.1e-05       8      66 ..     309     365 ..     303     375 .. 0.89
   2 ?    0.8   0.2      0.56   6.3e+02       7      31 ..     382     406 ..     378     413 .. 0.79

  Alignments for each domain:
  == domain 1  score: 23.5 bits;  conditional E-value: 4.6e-08
      TPR_12   8 nlaavlrrlgrydeAlellekaleiarrllGpdhpltattlrnLgrlyralgryeeAle 66 
                 + a++l++ g+ +eA el+e+al++ +   +p+    a    nL+ + +++ r+++A++
  KOO23746.1 309 EKANMLFAKGKITEAAELYERALQLDEVEAEPKA--RAVLHSNLAACRLKQRRWRDAVS 365
                 579***********************99999997..*********************86 PP

  == domain 2  score: 0.8 bits;  conditional E-value: 0.56
      TPR_12   7 nnlaavlrrlgrydeAlellekale 31 
                  ++a++ r+l + + Al+  + a+ 
  KOO23746.1 382 FRRAQAKRHLCDPEGALQDAQLAYK 406
                 4678889999999999988888775 PP

>> TPR_11  TPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.0   0.1   1.8e-07    0.0002       2      25 ..     312     335 ..     311     340 .. 0.92

  Alignments for each domain:
  == domain 1  score: 21.0 bits;  conditional E-value: 1.8e-07
      TPR_11   2 dayyeqGkyeeAieaYkkAlkldP 25 
                 ++++++Gk++eA e Y++Al+ld+
  KOO23746.1 312 NMLFAKGKITEAAELYERALQLDE 335
                 99********************97 PP

>> TPR_16  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.5   0.6     1e-06    0.0012       4      65 ..     311     375 ..     308     376 .. 0.92
   2 ?   -1.0   0.2       2.6   2.9e+03      36      62 ..     380     406 ..     378     416 .. 0.62

  Alignments for each domain:
  == domain 1  score: 19.5 bits;  conditional E-value: 1e-06
      TPR_16   4 araalragdyddAaaaleaalkrdpssPd...aaeAllllgdaalrqgrlaeAaalyraalraap 65 
                 a+ +++ g+ ++Aa+++e+al +d ++ +   +a  + +l+ ++l+q r+ +A+  +++a + +p
  KOO23746.1 311 ANMLFAKGKITEAAELYERALQLDEVEAEpkaRAVLHSNLAACRLKQRRWRDAVSECDSACALYP 375
                 6668999*****************99999*99999999*****************9999999887 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 2.6
      TPR_16  36 AllllgdaalrqgrlaeAaalyraalr 62 
                 Al+ +++a  ++ + ++A++  + a++
  KOO23746.1 380 ALFRRAQAKRHLCDPEGALQDAQLAYK 406
                 677777777777666666644444443 PP

>> TPR_7  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.6   0.1   0.00042      0.47       6      31 ..     311     336 ..     309     341 .. 0.83
   2 ?    5.5   0.1     0.018        20       2      20 ..     347     365 ..     346     370 .. 0.90

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00042
       TPR_7   6 arlysrlGdyeeAielyeqsLaltkd 31 
                 a++ ++ G+  eA+elye++L+l++ 
  KOO23746.1 311 ANMLFAKGKITEAAELYERALQLDEV 336
                 6788889999*********9999865 PP

  == domain 2  score: 5.5 bits;  conditional E-value: 0.018
       TPR_7   2 LlnLarlysrlGdyeeAie 20 
                 ++nLa ++ +++++++A++
  KOO23746.1 347 HSNLAACRLKQRRWRDAVS 365
                 58***************97 PP

>> TPR_19  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.8   1.6e-05     0.018       1      50 [.     314     369 ..     314     388 .. 0.85

  Alignments for each domain:
  == domain 1  score: 15.5 bits;  conditional E-value: 1.6e-05
      TPR_19   1 llaegdyaeAlalleqalqe.....dpk.naearllLAeallalgqldeAealLda 50 
                 l+a g+ +eA++l+e+alq      +pk  a +  +LA + l++ ++ +A   +d 
  KOO23746.1 314 LFAKGKITEAAELYERALQLdeveaEPKaRAVLHSNLAACRLKQRRWRDAVSECDS 369
                 6899**************776665577766666669**************988775 PP

>> TPR_14  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.4   0.5   0.00088      0.99       8      32 ..     311     335 ..     307     353 .. 0.76
   2 ?    5.6   0.2     0.031        35       8      43 ..     351     386 ..     344     387 .. 0.89

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00088
      TPR_14   8 aeallalGdpdeAiallrralalaP 32 
                 a  l+a G+  eA++l++ral+l+ 
  KOO23746.1 311 ANMLFAKGKITEAAELYERALQLDE 335
                 77899*****************764 PP

  == domain 2  score: 5.6 bits;  conditional E-value: 0.031
      TPR_14   8 aeallalGdpdeAiallrralalaPddaeawlllaq 43 
                 a+  l ++++++A+  ++ a+al+P +  a+++ aq
  KOO23746.1 351 AACRLKQRRWRDAVSECDSACALYPCFTKALFRRAQ 386
                 55567899*************************998 PP

>> TPR_10  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.1   0.00011      0.12       9      31 ..     311     333 ..     310     336 .. 0.95
   2 ?   -0.9   0.1       1.5   1.7e+03       7      32 ..     349     374 ..     348     374 .. 0.78

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 0.00011
      TPR_10   9 analrqrgrydeAealleealai 31 
                 an+l++ g+ +eA +l+e+al++
  KOO23746.1 311 ANMLFAKGKITEAAELYERALQL 333
                 89*******************96 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 1.5
      TPR_10   7 NLanalrqrgrydeAealleealair 32 
                 NLa+   +++r+ +A+  ++ a a++
  KOO23746.1 349 NLAACRLKQRRWRDAVSECDSACALY 374
                 5555556899*****99999888876 PP

>> Aha1_N  Activator of Hsp90 ATPase, N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0    0.0002      0.22      37     127 ..     540     634 ..     520     642 .. 0.76

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.0002
      Aha1_N  37 veGdasvnqrKgKvifiydlklklewegtvk..kedgkkvkGeieipelssenddddyeievsvkk...deekkekqklkelikskgvpklrekla 127
                 +eG++++    g+   ++ l l++ w ++++  +e +++  G+ ++ ++ + ++  d + +  + +    e++++++++  ++  + ++ ++ kl+
  KOO23746.1 540 LEGECTIRYHGGRRALFFHLTLEVPWRAVLGegTEREEQLGGKTRLWNVNHYTAFHDWK-HLHLRSthaAESGPAQDAISTMLAPAALALIKCKLQ 634
                 89***************************99999999**************99888887.455555444456666666666655555555555555 PP

>> TPR_8  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.3   0.00031      0.35       7      32 ..     310     335 ..     309     336 .. 0.92

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00031
                 HHHHHHHTT-HHHHHHHHHHHHHHHH CS
       TPR_8   7 lgsiylklgdyeeAkeyyekaleldp 32 
                 +++ ++ +g++ eA e ye+al+ld+
  KOO23746.1 310 KANMLFAKGKITEAAELYERALQLDE 335
                 688899******************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (691 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       573  (0.0319594); expected 358.6 (0.02)
Passed bias filter:                      343  (0.019131); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                        16  (0.000892409); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              16  [number of targets reported over threshold]
# CPU time: 0.60u 0.27s 00:00:00.87 Elapsed: 00:00:00.42
# Mc/sec: 4931.85
//
Query:       KOO23747.1  [L=521]
Description: hypothetical protein Ctob_002152 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.86    9.7   5.7        2.6    8.1   5.7    1.8  1  DivIVA    DivIVA protein


Domain annotation for each model (and alignments):
>> DivIVA  DivIVA protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.1   5.7   0.00014       2.6      56     110 ..     432     486 ..     425     494 .. 0.84

  Alignments for each domain:
  == domain 1  score: 8.1 bits;  conditional E-value: 0.00014
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
      DivIVA  56 keykeleetLkktlvvaqetaeevkanakkeaeliikeAekkaekiveeaeeeak 110
                 +e + le  L+ ++v+ +  a+e  ++a++ea    + A+ +ae+ ++ ae   k
  KOO23747.1 432 AEPTRLEAMLRASVVAGHLQAHERLEQANREAASRAETARTQAEAALKAAEAARK 486
                 56678999**************************************975554333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (521 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1373  (0.0765798); expected 358.6 (0.02)
Passed bias filter:                      610  (0.0340231); expected 358.6 (0.02)
Passed Vit filter:                        67  (0.00373696); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.64u 0.25s 00:00:00.89 Elapsed: 00:00:00.41
# Mc/sec: 3814.46
//
Query:       KOO23748.1  [L=229]
Description: mg2+ transporter-e family [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.4e-19   69.9   6.7    3.9e-19   69.2   6.7    1.3  1  MgtE             Divalent cation transporter
  ------ inclusion threshold ------
      0.072   11.9   0.0        0.1   11.4   0.0    1.1  1  Baculo_gp64      Baculovirus gp64 envelope glycoprotein famil
      0.075   13.1   0.6       0.14   12.3   0.6    1.4  1  bZIP_2           Basic region leucine zipper
       0.14   12.1   0.7       0.46   10.4   0.5    1.9  2  Surfac_D-trimer  Lung surfactant protein D coiled-coil trimer


Domain annotation for each model (and alignments):
>> MgtE  Divalent cation transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.2   6.7   8.8e-23   3.9e-19       1     122 [.      89     212 ..      89     214 .. 0.88

  Alignments for each domain:
  == domain 1  score: 69.2 bits;  conditional E-value: 8.8e-23
                 HHHHHHHHHHHHHHHHHHHHHHHHTTSS-GG....HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-.CTSHH.HHHHHHHHHHHHHHHH..HHHHHHH CS
        MgtE   1 iPvilglgGnlgaqlasristalhlgelekk....lkkvllkelrvvlllgvilgllifllalllgwslllal.vvglalvlvllaaallilgvllpll 94 
                 +++++g gGn+g+q+a ri+++l++ge++++    ++ ++  e+r +l lg il+++ fl+++ + ++ l+ + +++++l++++ ++++l  g++lpll
  KOO23748.1  89 MTMLVGAGGNAGNQAAVRIIRGLATGEVDPSpterTRAIVSDEMRRALALGGILVVAGFLRVIAFDGTTLVDAaAISASLFIIVSSSVVL--GTMLPLL 185
                 789*************************7777565699***********************99988844443326999999888888888..******* PP

                 HHHTTS-GGGSHHHHHHHHHHHHHHHHH CS
        MgtE  95 lwklglDPdnaaiPlltalgDllgtlll 122
                 l kl +D +  a+  +++++D++g+l+ 
  KOO23748.1 186 LSKLRVDAAH-ASTTIQVVMDVMGVLIT 212
                 *******999.67789*********986 PP

>> Baculo_gp64  Baculovirus gp64 envelope glycoprotein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   2.3e-05       0.1     288     353 ..       9      80 ..       6      88 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 2.3e-05
                  HHHHHHHHHHHHHHHHHHHHHHHHH...HHHHHHH...HHHHHHHH-TTHHHHHTTSSEEEEESSSS-EEEE CS
  Baculo_gp64 288 lseelayelellkasieeldarirk...lseildd...livsvakvderliGrlikasvssrflsedkfllm 353
                  ++  la e+e l+  ++el+a++++   l e+ldd     +s+      l+G li +s ss  l++++ ll 
   KOO23748.1   9 IQGSLAAENEQLRQRVAELEAQVQRtegLCEVLDDgggWTSSLGTRASWLLGLLICQSFSSLVLADNEALLL 80 
                  888999***************9986445889999844458999999999*****************998875 PP

>> bZIP_2  Basic region leucine zipper
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.6   3.1e-05      0.14      36      53 ..      12      29 ..      11      30 .. 0.90

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 3.1e-05
                HHHHHHHHHHHHHHHHHH CS
      bZIP_2 36 eLeeeNaqLrqkveqLek 53
                +L +eN+qLrq+v++Le+
  KOO23748.1 12 SLAAENEQLRQRVAELEA 29
                5899************97 PP

>> Surfac_D-trimer  Lung surfactant protein D coiled-coil trimerisation
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.5    0.0001      0.46       3      19 ..      19      35 ..      17      38 .. 0.89
   2 ?   -1.1   0.0      0.42   1.9e+03      36      45 ..     214     223 ..     213     224 .. 0.85

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.0001
                     HHHHHHHHHHHHHHHHH CS
  Surfac_D-trimer  3 aLrQrveaLeGklqrLq 19
                      LrQrv  Le ++qr +
       KOO23748.1 19 QLRQRVAELEAQVQRTE 35
                     69************965 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 0.42
                      EETTEEEEEE CS
  Surfac_D-trimer  36 sVGeKIFkta 45 
                      sV  KIF +a
       KOO23748.1 214 SVAPKIFSAA 223
                      7899***987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (229 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       892  (0.0497518); expected 358.6 (0.02)
Passed bias filter:                      645  (0.0359752); expected 358.6 (0.02)
Passed Vit filter:                        94  (0.0052429); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.45u 0.25s 00:00:00.70 Elapsed: 00:00:00.39
# Mc/sec: 1755.71
//
Query:       KOO23749.1  [L=453]
Description: hypothetical protein Ctob_002150 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.013   14.7   3.1       0.37    9.9   0.0    2.2  2  FSIP1     FSIP1 family


Domain annotation for each model (and alignments):
>> FSIP1  FSIP1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.4   2.3    0.0019        33     107     132 ..      94     186 ..      29     194 .. 0.51
   2 ?    9.9   0.0     2e-05      0.37     307     341 ..     326     360 ..     302     390 .. 0.82

  Alignments for each domain:
  == domain 1  score: 3.4 bits;  conditional E-value: 0.0019
       FSIP1 107 nlkel......................................................................DpklqeAikkmkkLDkiLakk 132
                 +                                                                          Dp   +A+  m++LD+ L+  
  KOO23749.1  94 E---EretllsyiaelrsredeageairsadfetdvveltdrgrleraneeahadgratkrsqaplvakviqhvkDPSTMDALLEMQRLDEALEVT 186
                 1...11223333333333333333333333444444444444555555555566666667778889999999999***************999754 PP

  == domain 2  score: 9.9 bits;  conditional E-value: 2e-05
       FSIP1 307 pgeGYtpeedeakqLaeIdekLqellssddfesit 341
                  geGY+p+++  + La Id+ L el  ++ ++s++
  KOO23749.1 326 MGEGYRPDPEACERLAAIDAALEELGGQHALTSLE 360
                 59***********************9988877765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (453 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       864  (0.0481901); expected 358.6 (0.02)
Passed bias filter:                      402  (0.0224218); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.24s 00:00:00.73 Elapsed: 00:00:00.38
# Mc/sec: 3578.44
//
Query:       KOO23750.1  [L=720]
Description: hypothetical protein Ctob_002151 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
  ------ inclusion threshold ------
        1.6    7.1  11.1        2.4    6.5  11.1    1.1  1  Borrelia_P83  Borrelia P83/100 protein


Domain annotation for each model (and alignments):
>> Borrelia_P83  Borrelia P83/100 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.5  11.1   0.00014       2.4     243     329 ..      57     151 ..      40     169 .. 0.69

  Alignments for each domain:
  == domain 1  score: 6.5 bits;  conditional E-value: 0.00014
  Borrelia_P83 243 adkqrkevr.eklqeaknlpepadvsskkedkkv.........aeekkreiekaqkeikkkdeeakkakdakaedlkkeskaeekeaedkeleakke 329
                   a k++ +++ e+ + ak+ +++a+ +s++    +            + re+ + ++e+++++  a+k  +++a  +++e++    +a++k +ea+  
    KOO23750.1  57 AGKRKLDAEkEQCKLAKQEEKRAAATSPPLRP-IppdalpaaeSVCQEREAQRQKREAERAAARAEKEAQRAALVAEREARRAAVRADKK-AEAEDR 151
                   33334333303334477777777777777643.2355556533245899****999***********************99999996665.444433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (720 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1024  (0.0571142); expected 358.6 (0.02)
Passed bias filter:                      388  (0.0216409); expected 358.6 (0.02)
Passed Vit filter:                        50  (0.00278878); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.65u 0.28s 00:00:00.93 Elapsed: 00:00:00.43
# Mc/sec: 4985.06
//
Query:       KOO23751.1  [L=141]
Description: hypothetical protein Ctob_002156 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.025   14.3   0.3      0.057   13.2   0.3    1.6  1  PSD2      Protein of unknown function (DUF1585)


Domain annotation for each model (and alignments):
>> PSD2  Protein of unknown function (DUF1585)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.3   3.2e-06     0.057      10      58 ..      27      77 ..      23      80 .. 0.84

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 3.2e-06
        PSD2 10 eLkqlL..larsdqfarclaeklltYAlGRgleasDrcaveeivaalrasg 58
                e++++L  + +s ++++ l +  ++YA++Rg+ + D ++v   +++ ++++
  KOO23751.1 27 EMEAALfqEMESGAAVERLQQMAAAYATARGVAEDDDEEVGNADEQPQQDE 77
                66777766678889999999999*****************99998887765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (141 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       462  (0.0257683); expected 358.6 (0.02)
Passed bias filter:                      291  (0.0162307); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.32u 0.28s 00:00:00.60 Elapsed: 00:00:00.38
# Mc/sec: 1122.02
//
Query:       KOO23752.1  [L=120]
Description: hypothetical protein Ctob_002154 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.014   14.8   2.6      0.016   14.6   2.6    1.1  1  DUF4407   Domain of unknown function (DUF4407)
      0.033   13.9   1.3      0.041   13.6   1.3    1.0  1  FEZ       FEZ-like protein


Domain annotation for each model (and alignments):
>> DUF4407  Domain of unknown function (DUF4407)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.6   2.6   1.7e-06     0.016     107     191 ..      18     111 ..      14     120 .] 0.73

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 1.7e-06
     DUF4407 107 eIdaelaeeqqeeakelkeqlaaa..........ltaelaeleaqiaalqaeidaaearldalraeaqkeldgtkgtgttgvaGkgpaakekkaq 191
                 eIdae ++++++ ++   eq+++            ++el +l +++++l+++ da +a+++al a+++k  +  k++g  g++  g+aak+ ++ 
  KOO23752.1  18 EIDAETQFTAEAGERMSVEQVRELasilsriidtRNKELVALLEKQDELRQQRDASQATVQALVAQVDKSRFVHKSEGV-GTKLGGAAAKATRSS 111
                 6777777777777777767766667777777777999999999999999999999999999999999999999886663.344445666666655 PP

>> FEZ  FEZ-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   1.3   4.5e-06     0.041     146     225 ..      15      88 ..       2      96 .. 0.75

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 4.5e-06
         FEZ 146 lseeveekskevnssssyeeklkklsvaqlnelleevetlirelseeLvqeLAlRdELefeKEvKnsFIslLlavQnrrr 225
                  ++e++       +++  +e  +++sv+q+ el   + + i++ + eLv+ L + dEL  +++   + + +L+a  ++ r
  KOO23752.1  15 AAQEID------AETQFTAEAGERMSVEQVRELASILSRIIDTRNKELVALLEKQDELRQQRDASQATVQALVAQVDKSR 88 
                 333333......233344456678***********************************999999999999987666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (120 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1514  (0.0844442); expected 358.6 (0.02)
Passed bias filter:                      682  (0.0380389); expected 358.6 (0.02)
Passed Vit filter:                        61  (0.00340231); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.41u 0.24s 00:00:00.64 Elapsed: 00:00:00.40
# Mc/sec: 900.02
//
Query:       KOO23753.1  [L=183]
Description: hypothetical protein Ctob_002155 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.5e-07   30.0  15.2    0.00047   20.1   3.3    2.5  2  zf-CCHC     Zinc knuckle
  ------ inclusion threshold ------
      0.033   14.6   0.6       0.11   13.0   0.0    1.9  2  DUF4101     Protein of unknown function (DUF4101)
       0.07   13.0  12.5       0.08   12.8   0.5    2.3  2  zf-CCHC_2   Zinc knuckle
       0.13   12.0   7.0       0.16   11.7   0.6    2.4  2  zf-CCHC_4   Zinc knuckle
       0.39   10.5  16.6        1.8    8.3   0.0    3.4  3  zf-CCHC_5   GAG-polyprotein viral zinc-finger
       0.53   10.4   4.4        6.8    6.8   0.5    2.6  2  YyzF        YyzF-like protein
       0.56   10.7  12.6       0.13   12.8   9.1    1.6  2  DUF702      Domain of unknown function (DUF702)


Domain annotation for each model (and alignments):
>> zf-CCHC  Zinc knuckle
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   4.2   5.8e-06     0.015       2      18 .]      93     109 ..      92     109 .. 0.94
   2 !   20.1   3.3   1.8e-07   0.00047       2      16 ..     111     125 ..     110     127 .. 0.93

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 5.8e-06
                 CTSSSSSSSSTTTTSTS CS
     zf-CCHC   2 kCynCGepGHiardCpk 18 
                  Cy C + GH ++dCp+
  KOO23753.1  93 HCYVCKKWGHTKKDCPN 109
                 7***************6 PP

  == domain 2  score: 20.1 bits;  conditional E-value: 1.8e-07
                 CTSSSSSSSSTTTTS CS
     zf-CCHC   2 kCynCGepGHiardC 16 
                  C+ CG++GH++ +C
  KOO23753.1 111 RCRFCGQEGHFSEEC 125
                 7************** PP

>> DUF4101  Protein of unknown function (DUF4101)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.0   4.1e-05      0.11      21      69 ..      39      89 ..      35      96 .. 0.77
   2 ?   -0.6   0.1      0.67   1.7e+03      30      55 ..     146     163 ..     126     178 .. 0.49

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 4.1e-05
                -CCCHHHCB-HHHHHHHHHHHHHHHHCTEEE..EEEEEEEEEEEEEEECTS CS
     DUF4101 21 diekleeiltgpllsqwrkraewlkkngsyw..eyelqklsvesvevsgkg 69
                + + l+  ++ ++l+q +k+ae +++++  w  +y++++++++++   +++
  KOO23753.1 39 EEDPLDAFMKTQVLEQAKKEAERAAAHQVAWraQYGHKDVQITDAIEPDND 89
                677899999***********99888887655338******99876555544 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 0.67
                 -HHHHHHHHHHHHHHHHCTEEEEEEE CS
     DUF4101  30 tgpllsqwrkraewlkkngsyweyel 55 
                 +          a++ +k+++ we +l
  KOO23753.1 146 KAY--------AAKKAKKRAEWESQL 163
                 223........333334444443333 PP

>> zf-CCHC_2  Zinc knuckle
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.2   5.9     0.015        38       6      21 .]      94     109 ..      93     109 .. 0.91
   2 ?   12.8   0.5   3.1e-05      0.08       6      19 ..     112     125 ..     111     127 .. 0.89

  Alignments for each domain:
  == domain 1  score: 4.2 bits;  conditional E-value: 0.015
   zf-CCHC_2   6 ChiCgkkGHyIqdCPt 21 
                 C +C+k+GH  +dCP+
  KOO23753.1  94 CYVCKKWGHTKKDCPN 109
                 889***********95 PP

  == domain 2  score: 12.8 bits;  conditional E-value: 3.1e-05
   zf-CCHC_2   6 ChiCgkkGHyIqdC 19 
                 C+ Cg+ GH+  +C
  KOO23753.1 112 CRFCGQEGHFSEEC 125
                 **********8888 PP

>> zf-CCHC_4  Zinc knuckle
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.6   6.2e-05      0.16      33      48 ..      93     108 ..      90     109 .. 0.90
   2 ?    4.0   0.6     0.016        41      34      48 ..     112     126 ..     108     127 .. 0.88

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 6.2e-05
   zf-CCHC_4  33 fCyiCgvlGHsdkrCd 48 
                  Cy+C   GH+ k+C+
  KOO23753.1  93 HCYVCKKWGHTKKDCP 108
                 4**************8 PP

  == domain 2  score: 4.0 bits;  conditional E-value: 0.016
   zf-CCHC_4  34 CyiCgvlGHsdkrCd 48 
                 C  Cg  GH  ++C+
  KOO23753.1 112 CRFCGQEGHFSEECE 126
                 **************6 PP

>> zf-CCHC_5  GAG-polyprotein viral zinc-finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.8   7.1     0.075   1.9e+02       3      20 ..      92     109 ..      90     111 .. 0.84
   2 ?    5.3   1.7    0.0063        16       1      21 [.     108     128 ..     108     139 .. 0.84
   3 ?    8.3   0.0   0.00071       1.8       8      32 ..     153     177 ..     151     179 .. 0.92

  Alignments for each domain:
  == domain 1  score: 1.8 bits;  conditional E-value: 0.075
                 -B-TTT-SSBS-TTT--- CS
   zf-CCHC_5   3 glCpRCkkgkHwardChs 20 
                   C  Ckk  H ++dC  
  KOO23753.1  92 KHCYVCKKWGHTKKDCPN 109
                 56999***********65 PP

  == domain 2  score: 5.3 bits;  conditional E-value: 0.0063
                 ---B-TTT-SSBS-TTT---S CS
   zf-CCHC_5   1 ppglCpRCkkgkHwardChsk 21 
                 p  +C  C++  H   +C  k
  KOO23753.1 108 PNKRCRFCGQEGHFSEECEEK 128
                 5679**************877 PP

  == domain 3  score: 8.3 bits;  conditional E-value: 0.00071
                 T-SSBS-TTT---SEEGGGEE---X CS
   zf-CCHC_5   8 CkkgkHwardChskfdknGnpLsan 32 
                  kk+  w ++ ++k+  +G+  sa+
  KOO23753.1 153 AKKRAEWESQLRAKTGIEGYEVSAP 177
                 59******************99997 PP

>> YyzF  YyzF-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.5   0.3     0.014        35      25      41 ..      83      99 ..      78     104 .. 0.81
   2 ?    6.8   0.5    0.0027       6.8      31      45 ..     107     121 ..     101     122 .. 0.80

  Alignments for each domain:
  == domain 1  score: 4.5 bits;  conditional E-value: 0.014
        YyzF 25 kleeveklsktCefCek 41
                ++e +++++k+C +C+k
  KOO23753.1 83 AIEPDNDPNKHCYVCKK 99
                56667799*******97 PP

  == domain 2  score: 6.8 bits;  conditional E-value: 0.0027
        YyzF  31 klsktCefCekpAtY 45 
                  ++k+C+fC ++  +
  KOO23753.1 107 CPNKRCRFCGQEGHF 121
                 4789*******9876 PP

>> DUF702  Domain of unknown function (DUF702)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.1       1.5   3.8e+03      15      15 ..      58      58 ..      31      86 .. 0.53
   2 ?   12.8   9.1   4.9e-05      0.13       5      65 ..      94     158 ..      90     174 .. 0.67

  Alignments for each domain:
  == domain 1  score: -1.7 bits;  conditional E-value: 1.5
      DUF702 15 d 15
                +
  KOO23753.1 58 E 58
                1 PP

  == domain 2  score: 12.8 bits;  conditional E-value: 4.9e-05
      DUF702   5 CqdCgn..qakkdCahlrCRtCCksrgfdCetHvkstwvpa..akrrerqqqlaalqaqqaeaea 65 
                 C  C++  ++kkdC  +rCR C +   f+ e   k   + a   k +er++q+a +++++++ ++
  KOO23753.1  94 CYVCKKwgHTKKDCPNKRCRFCGQEGHFSEECEEKDRKIGAqfDKDKERKRQKAYAAKKAKKRAE 158
                 6666554479******************8777777777777324666666666555555444333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (183 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1515  (0.0845); expected 358.6 (0.02)
Passed bias filter:                      500  (0.0278878); expected 358.6 (0.02)
Passed Vit filter:                        53  (0.0029561); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.47u 0.23s 00:00:00.70 Elapsed: 00:00:00.43
# Mc/sec: 1285.26
//
Query:       KOO23754.1  [L=249]
Description: proteasome subunit alpha type 3 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    5.4e-45  153.2   0.0    7.3e-45  152.8   0.0    1.2  1  Proteasome      Proteasome subunit
      7e-15   54.4   0.4    1.2e-14   53.6   0.4    1.4  1  Proteasome_A_N  Proteasome subunit A N-terminal signature


Domain annotation for each model (and alignments):
>> Proteasome  Proteasome subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  152.8   0.0   8.2e-49   7.3e-45       4     188 ..      34     214 ..      31     216 .. 0.94

  Alignments for each domain:
  == domain 1  score: 152.8 bits;  conditional E-value: 8.2e-49
                 S-EEEEEEETTEEEEEEEEEEEETTEEEESSSSTSEEEEETTEEEEEEESHHHHHHHHHHHHHHHHHHHHHHSSGTCHHHHHHHHHHHHHHHHHHCTTT CS
  Proteasome   4 GttvvGikgkdgvvlaadkratagskllskstveKifkiddhigvafaGlaaDartlvrraraeaqlyrlrygrpipverlvarvaaklqaytqrsgrr 102
                  +t+vGi++kdgvv++++k     sk+l + t ++i+ +d+h g++++G++aDar++v++ r+ea  y    g pip ++l++r++ +++ yt+++ +r
  KOO23754.1  34 SSTAVGIRCKDGVVMCVEKPKL--SKMLVEGTNRRIMTVDKHSGICISGMIADARQIVNYGRREATGYLDFSGSPIPGSVLASRISMMMHTYTLYWTVR 130
                 58****************8666..788899999****************************************************************** PP

                 TTSEEEEEEEEETTTEEEEEEEETTSEEEEESSEEEESTTHHHHHHHHHHHHSTTBSHHHHHHHHHHHHHHHHHHBTTSCSSEEEE CS
  Proteasome 103 pfgvslliagvdeeggpeLyqidpsGsyieekdavaiGsgseaaktalekeykedltleeavelavkalkealerdklsgknieva 188
                 pfg+s+lia++ eeg p+Ly++dpsG ++++  a+aiG+g++ ak+ lek+    lt  eav  a k++++ ++  k ++ ++e+ 
  KOO23754.1 131 PFGASVLIASYAEEG-PQLYSVDPSGVSYRY-FATAIGKGKNGAKSQLEKLDLTTLTAREAVIEAAKVIYSQHDPSKEKPIELEIS 214
                 ************999.***************.7*************************************9999666666665555 PP

>> Proteasome_A_N  Proteasome subunit A N-terminal signature
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.6   0.4   1.3e-18   1.2e-14       1      23 []       8      30 ..       8      30 .. 0.99

  Alignments for each domain:
  == domain 1  score: 53.6 bits;  conditional E-value: 1.3e-18
  Proteasome_A_N  1 YDrslttFSPdGRLfQVEYAmkA 23
                    YD+s+ttFSPdGR+fQVEYA+kA
      KOO23754.1  8 YDQSTTTFSPDGRVFQVEYATKA 30
                    **********************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (249 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       479  (0.0267165); expected 358.6 (0.02)
Passed bias filter:                      407  (0.0227007); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.42u 0.25s 00:00:00.67 Elapsed: 00:00:00.40
# Mc/sec: 1857.63
//
Query:       KOO23755.1  [L=981]
Description: hypothetical protein Ctob_002144 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    8.7e-74  248.2   0.0    1.1e-73  247.8   0.0    1.1  1  Pkinase         Protein kinase domain
    4.4e-43  147.4   0.0    6.7e-43  146.8   0.0    1.2  1  Pkinase_Tyr     Protein tyrosine kinase
    2.7e-06   27.2   2.0    3.4e-05   23.7   0.1    3.4  3  Arm             Armadillo/beta-catenin-like repeat
    2.1e-05   24.0   0.0    3.3e-05   23.4   0.0    1.4  1  Kinase-like     Kinase-like
    3.9e-05   22.6   0.0    6.8e-05   21.8   0.0    1.3  1  Pkinase_fungal  Fungal protein kinase
     0.0053   16.9   0.2       0.26   11.6   0.0    4.0  4  HEAT            HEAT repeat
  ------ inclusion threshold ------
      0.037   13.0   0.0      0.072   12.0   0.0    1.4  1  Haspin_kinase   Haspin like kinase domain
      0.044   13.4   0.1      0.071   12.7   0.1    1.2  1  RIO1            RIO1 family
      0.078   12.3   0.0       0.13   11.6   0.0    1.2  1  Kdo             Lipopolysaccharide kinase (Kdo/WaaP) family
       0.26   11.8   9.0       0.66   10.6   0.1    4.9  4  HEAT_EZ         HEAT-like repeat


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  247.8   0.0   6.3e-77   1.1e-73       2     264 .]       8     257 ..       7     257 .. 0.94

  Alignments for each domain:
  == domain 1  score: 247.8 bits;  conditional E-value: 6.3e-77
                 EEEEEEEEESSEEEEEEEETTTTEEEEEEEEECHCHCHHHHHHHHHHHHHHHHHSCTTB--EEEEEEESSEEEEEEE--TTEBHHHHHHHHSS--HHHH CS
     Pkinase   2 ekleklGeGsfGkVykaveketgkivAvKkikkekakkkkekkvlrEikilkklkhpnivrlyevfeekdelylvleyveggeladllerkgslseeea 100
                  +le +GeGsfGkVyk+++k  g+ vA+K i +  +++++ +++++Ei+il++l+h+niv ++++fe+++e+++v+ey++ gel+++le+++sl+eee+
  KOO23755.1   8 IVLELIGEGSFGKVYKGRRKFCGQVVALKFIPTGGRSDRDLQALRQEIEILRTLQHENIVLMLDYFETESEIIVVTEYAQ-GELFEVLEDDRSLPEEEV 105
                 67899***************************************************************************.66**************** PP

                 HHHHHHHHHHHHHHHHTTEE-SS-SGGGEEEETTTEEEE-SGTTSEESSSSCS.BCTTTSCGGGS-HHHHTTSCBSHHHHHHHHHHHHHHHHHSS-STT CS
     Pkinase 101 kkiakqilegleylHskgiiHrDlKpeNiLidekgelKitDFGlakelesssk.ltsfvgtseYlAPEvlkeneyskkvDvWslGvilyelltgkppfs 198
                 + ia+q++++l ylHs+++iHrD+Kp+N+L+     ++++DFG+a+ ++++++ lts+ gt+ Y++PE+++e++y++ +D+WslG+il+el++g+ppf+
  KOO23755.1 106 RIIARQLVQALYYLHSNRVIHRDMKPQNVLLGAGSRVMLCDFGFARAMSQHTTvLTSIKGTPLYMSPELVQEQPYDHRADLWSLGIILFELFAGQPPFY 204
                 ********************************8888***************999********************************************* PP

                 TSSHHHHHHHHHHTHHHHHHHCTSHH...HHHTTS-HHHHHHHHHHT-SSGCCSTTHHHHHTSGGG CS
     Pkinase 199 gekgkekvekeldqlekilkilgetkeklpeaseiseeakdllkkllkkdpkkRltaeellqhpyl 264
                  ++  + ++ +             ++++++ + ++s++++++l+ ll+k+p++Rl++ +llqhp++
  KOO23755.1 205 TNNIYTLISLI-------------VQQEVQFPPQMSPSFRSFLSGLLRKNPEHRLGWPHLLQHPFI 257
                 33333322222.............3558999*********************************97 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  146.8   0.0   3.7e-46   6.7e-43       5     254 ..      11     250 ..       8     254 .. 0.90

  Alignments for each domain:
  == domain 1  score: 146.8 bits;  conditional E-value: 3.7e-46
                  EEEEEESSEEEEEEEEETTTTSSEEEEEEEEESTT.SSHHHHHHHHHHHHHHHTS-BTTB--EEEEEESSSSEEEEEE--TTEBHHHHHHHTCTTTSB CS
  Pkinase_Tyr   5 kklGeGafGkVvegtlkgekekkevkVavKtlkee.ateeekeelleeakimkklkhpnivkllgvctkeepllivteyvkgGdLlkfLrkkekeklt 101
                  + +GeG+fGkV++g+ k       + Va+K +  +  ++++ ++l +e++i+++l+h+niv +l     e+++++vtey+ +G+L + L+++  ++l 
   KOO23755.1  11 ELIGEGSFGKVYKGRRK----FCGQVVALKFIPTGgRSDRDLQALRQEIEILRTLQHENIVLMLDYFETESEIIVVTEYA-QGELFEVLEDD--RSLP 101
                  679************99....78889******76505556699************************************7.59*******97..99** PP

                  HHHHHHHHHHHHHHHHHHHHTTEEEST-SGGGEEEEETTEEEE-STTTHEETTTSSEEEETTSSTSGGGGS-HHHHHHSEEEHHHHHHHHHHHHHHHH CS
  Pkinase_Tyr 102 lkdllsfalqvAkGmeyLeskklvHrdlaarNvLlsenkvvkisDfGLardiekddeyvkkeeaklpvkWmapEslkekkftsksDvWsfGvllwEif 199
                   +++  +a q+ +++ yL+s++++Hrd+  +NvLl  ++ v ++DfG ar++  ++++++ ++ k    +m+pE ++e+ + +++D Ws G++l+E+f
   KOO23755.1 102 EEEVRIIARQLVQALYYLHSNRVIHRDMKPQNVLLGAGSRVMLCDFGFARAM--SQHTTVLTSIKGTPLYMSPELVQEQPYDHRADLWSLGIILFELF 197
                  ***************************************************9..566666777788888***************************** PP

                  TTSSGTTTTSHHHHHHHHHHTTEES-BBTTSBHHHHHHHHHHT-SSGGGS--HHH CS
  Pkinase_Tyr 200 tlgespypglkneevleklkegkrlekpekcpeelyelmkkcweedpeeRptfse 254
                    g+ p+ + +  ++++ + + ++++ p ++++++ ++++  ++++pe+R    +
   KOO23755.1 198 A-GQPPFYTNNIYTLISLIVQ-QEVQFPPQMSPSFRSFLSGLLRKNPEHRLGWPH 250
                  9.*****99888888887765.567888889******************976555 PP

>> Arm  Armadillo/beta-catenin-like repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.3   0.1      0.45     8e+02      12      23 ..     612     623 ..     606     633 .. 0.80
   2 !   23.7   0.1   1.9e-08   3.4e-05      12      41 .]     826     855 ..     821     855 .. 0.95
   3 ?   -1.7   0.0       1.9   3.4e+03      16      40 ..     951     975 ..     950     975 .. 0.87

  Alignments for each domain:
  == domain 1  score: 0.3 bits;  conditional E-value: 0.45
                 THHHHHHHHTTT CS
         Arm  12 GavppLvrLLss 23 
                  a+++L++LL+ 
  KOO23755.1 612 PALRALCDLLDE 623
                 5899******84 PP

  == domain 2  score: 23.7 bits;  conditional E-value: 1.9e-08
                 THHHHHHHHTTTSSHHHHHHHHHHHHHHTT CS
         Arm  12 GavppLvrLLssedeevqeeAawALsNLaa 41 
                  +v+pLv +Ls+ d +++ +Aa+AL+NLa+
  KOO23755.1 826 SCVEPLVGCLSDLDHKTRANAAGALGNLAR 855
                 58**************************97 PP

  == domain 3  score: -1.7 bits;  conditional E-value: 1.9
                 HHHHHTTTSSHHHHHHHHHHHHHHT CS
         Arm  16 pLvrLLssedeevqeeAawALsNLa 40 
                 +L+ L s++d ++++  ++ L+ La
  KOO23755.1 951 ALLPLVSHPDGMLRQYTTRVLQKLA 975
                 8999******999999999998775 PP

>> Kinase-like  Kinase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.4   0.0   1.8e-08   3.3e-05      95     256 ..      54     209 ..       7     245 .. 0.77

  Alignments for each domain:
  == domain 1  score: 23.4 bits;  conditional E-value: 1.8e-08
  Kinase-like  95 kkpfiqlkskesiywvvnallllpaasvdleilnkvlqkrsethkkletiarlllTlqlirlaanLqakglvhgkftvdnllldekgglmlggftaLv 192
                     + +  ++e+i  ++++++   ++ v  e  + +l ++ e +++l +    ++  ql++   +L+++ ++h +++++n+ll    ++ml +f+  +
   KOO23755.1  54 EIEILRTLQHENIVLMLDYFETESEIIVVTEYAQGELFEVLEDDRSLPEEEVRIIARQLVQALYYLHSNRVIHRDMKPQNVLLGAGSRVMLCDFGFAR 151
                  556667778888888888888777777777777777777777777777777778888889999*******************************9888 PP

  Kinase-like 193 ragtkvvl.seve..kgfaPpEllgsrggytrknktkmthkldaWqlGlviyriwclklPltlatee 256
                     ++  +  +++    +  pEl+ +           + h  d W lG+  + + + + P+      
   KOO23755.1 152 AMSQHTTVlTSIKgtPLYMSPELVQE---------QPYDHRADLWSLGIILFELFAGQPPFYTNNIY 209
                  77777666466663445999999988.........45899*************99999998655444 PP

>> Pkinase_fungal  Fungal protein kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.8   0.0   3.8e-08   6.8e-05     314     399 ..     111     188 ..     104     195 .. 0.89

  Alignments for each domain:
  == domain 1  score: 21.8 bits;  conditional E-value: 3.8e-08
  Pkinase_fungal 314 DaIkghrsLflkagiLHrDiSenNilitdskkegerkglLiDLDlakelsddssesgarertGTleFmaievlkgeeHsyrhDLES 399
                     + ++++  L+   +++HrD   +N+l+      ++ + +L D+ +a  +s  +++ +     GT+ +m+ e+++++   +r DL S
      KOO23755.1 111 QLVQALYYLH-SNRVIHRDMKPQNVLLG-----AGSRVMLCDFGFARAMS--QHTTVLTSIKGTPLYMSPELVQEQPYDHRADLWS 188
                     5688899999.99***************.....99***************..57888899**************887777888866 PP

>> HEAT  HEAT repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.0       3.8   6.8e+03      13      23 ..     638     648 ..     629     648 .. 0.80
   2 !   11.6   0.0   0.00015      0.26       3      29 ..     829     855 ..     827     857 .. 0.91
   3 ?   -2.3   0.0       4.4   7.9e+03      19      28 ..     925     934 ..     924     936 .. 0.86
   4 ?   -0.9   0.0       1.5   2.7e+03       5      29 ..     952     976 ..     950     976 .. 0.89

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 3.8
                 SHHHHHHHHHH CS
        HEAT  13 speVReaAaka 23 
                  p+ R+aA+++
  KOO23755.1 638 TPQTRSAAVLC 648
                 6889****998 PP

  == domain 2  score: 11.6 bits;  conditional E-value: 0.00015
                 HHHHHHHT-SSHHHHHHHHHHHHHHHH CS
        HEAT   3 PlllkllsDpspeVReaAakaLgalae 29 
                  +l+ +lsD + + R++Aa aLg+la+
  KOO23755.1 829 EPLVGCLSDLDHKTRANAAGALGNLAR 855
                 57899********************97 PP

  == domain 3  score: -2.3 bits;  conditional E-value: 4.4
                 HHHHHHHHHH CS
        HEAT  19 aAakaLgala 28 
                 +A+ +Lg+la
  KOO23755.1 925 TAVFSLGNLA 934
                 79******98 PP

  == domain 4  score: -0.9 bits;  conditional E-value: 1.5
                 HHHHHT-SSHHHHHHHHHHHHHHHH CS
        HEAT   5 llkllsDpspeVReaAakaLgalae 29 
                 ll l s+p+   R+ + + L +la+
  KOO23755.1 952 LLPLVSHPDGMLRQYTTRVLQKLAQ 976
                 88999***********999999986 PP

>> Haspin_kinase  Haspin like kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0     4e-05     0.072     212     267 ..     109     162 ..       8     171 .. 0.79

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 4e-05
  Haspin_kinase 212 fwqivkiLyvaEtkfeFEHRdLhldniLvdknlnvtlidlklsRlessegkvlytr 267
                      q v+ Ly   ++ +  HRd++ +n+L+ +   v l+d+  +R+  s+++++ t 
     KOO23755.1 109 ARQLVQALYYLHSN-RVIHRDMKPQNVLLGAGSRVMLCDFGFARAM-SQHTTVLTS 162
                    55666666666554.456***************************8.566555555 PP

>> RIO1  RIO1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.1   3.9e-05     0.071      57     151 ..      53     149 ..      44     161 .. 0.73

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 3.9e-05
                 HHHHHHHHHHHTT.--S--EEEEETTEEE.EE--EETTEEGGBHHHCG-..HHHHHHHHHHHHHHHHHHHHTSTEEESS-STTSEEEETT.EEEE--GT CS
        RIO1  57 kEfrnLkrleeag.vpvPkpielkrhvlv.mefigedgvaapklkdvee..eeeaeelyeevleemrklykeaglvHaDLSeyNvlvded.kvviIDvs 150
                 +E+++L+ l++++ v + +  e +++++v  e+ +  g     l+d ++  eee + +++++++++   ++ ++++H D+   Nvl+  + +v++ D++
  KOO23755.1  53 QEIEILRTLQHENiVLMLDYFETESEIIVvTEYAQ--GELFEVLEDDRSlpEEEVRIIARQLVQAL-YYLHSNRVIHRDMKPQNVLLGAGsRVMLCDFG 148
                 67777777777664445566666666655156666..77777788877446888888888888865.55569******************999999987 PP

                 T CS
        RIO1 151 Q 151
                  
  KOO23755.1 149 F 149
                 5 PP

>> Kdo  Lipopolysaccharide kinase (Kdo/WaaP) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   7.4e-05      0.13     105     167 ..      90     148 ..      73     158 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 7.4e-05
         Kdo 105 LedllakwaelaeelkrallkavgrliaklhragvnHadlyaknillqqeeeeeaeiwliDld 167
                 L ++l++ ++l+ee  r + +++ ++   lh+  v H+d+ ++n+ll ++     +++l D+ 
  KOO23755.1  90 LFEVLEDDRSLPEEEVRIIARQLVQALYYLHSNRVIHRDMKPQNVLLGAGS----RVMLCDFG 148
                 5667777666888888899999999999********************998....99999985 PP

>> HEAT_EZ  HEAT-like repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.1       3.2   5.7e+03      20      42 ..     559     579 ..     549     586 .. 0.69
   2 ?   10.6   0.1   0.00037      0.66      26      55 .]     824     853 ..     813     853 .. 0.85
   3 ?    7.0   0.8    0.0048       8.6       4      34 ..     843     877 ..     843     885 .. 0.73
   4 ?    2.3   0.1      0.14   2.5e+02       5      55 .]     924     974 ..     918     974 .. 0.72

  Alignments for each domain:
  == domain 1  score: -2.0 bits;  conditional E-value: 3.2
     HEAT_EZ  20 ellqplvpeilpaLlalLnddsd 42 
                 ++  + v++ ++ Ll++L++  +
  KOO23755.1 559 DAALTGVEARVAKLLQALES--P 579
                 55556788899999999954..4 PP

  == domain 2  score: 10.6 bits;  conditional E-value: 0.00037
     HEAT_EZ  26 vpeilpaLlalLnddsdeVRaaAagaLgnl 55 
                 +   + +L+ +L+d + ++Ra+AagaLgnl
  KOO23755.1 824 LASCVEPLVGCLSDLDHKTRANAAGALGNL 853
                 56678899999999999***********97 PP

  == domain 3  score: 7.0 bits;  conditional E-value: 0.0048
     HEAT_EZ   4 RraAawaLGr....laggepellqplvpeilpaLl 34 
                 R++Aa aLG+     a+  pel++ +vp++l aL+
  KOO23755.1 843 RANAAGALGNlarnGAQLSPELIARQVPQALLALA 877
                 77888899995445333445557779999998887 PP

  == domain 4  score: 2.3 bits;  conditional E-value: 0.14
     HEAT_EZ   5 raAawaLGrlaggepel..lqp.lvpeilpaLlalLnddsd..eVRaaAagaLgnl 55 
                 r A+  LG+lag++ +   + p +++++l +L+     +++  + R+++ + L +l
  KOO23755.1 924 RTAVFSLGNLAGHAECRevMTPlALDKALLPLV-----SHPdgMLRQYTTRVLQKL 974
                 678889999776666665444448888888888.....887779999999988765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (981 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       549  (0.0306208); expected 358.6 (0.02)
Passed bias filter:                      309  (0.0172346); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.70u 0.28s 00:00:00.98 Elapsed: 00:00:00.45
# Mc/sec: 6557.62
//
Query:       KOO23756.1  [L=270]
Description: hypothetical protein Ctob_002147 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    0.00046   20.0   0.0    0.00065   19.5   0.0    1.2  1  Rho_GDI   RHO protein GDP dissociation inhibitor
  ------ inclusion threshold ------
      0.074   13.5   0.2       0.11   12.9   0.2    1.3  1  CCDC53    Subunit CCDC53 of WASH complex


Domain annotation for each model (and alignments):
>> Rho_GDI  RHO protein GDP dissociation inhibitor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.5   0.0   7.3e-08   0.00065     123     175 ..     195     250 ..     163     255 .. 0.86

  Alignments for each domain:
  == domain 1  score: 19.5 bits;  conditional E-value: 7.3e-08
     Rho_GDI 123 vqtvwktgvkvdkskemlGsysPqqee...yeyeleeeeaPsGllarGsYsakskf 175
                  ++vw + v v  +k+ lG+y  q+ +   ye++++ ++ P+ +++ G+Y+++  f
  KOO23756.1 195 YKKVWGAHVPVYTRKTKLGTYEEQAADeppYEFHMPPDDVPNSFAVCGEYKVSIAF 250
                 5789999**************999844457**********************9887 PP

>> CCDC53  Subunit CCDC53 of WASH complex
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.2   1.3e-05      0.11      33     105 ..      23      97 ..      11     121 .. 0.57

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 1.3e-05
      CCDC53  33 leitlalLEak.LsSipgleeveaeaaeastsddn..aarkgppppppsseaaaaaaqaeeasqaeesaeeeaeeq 105
                 ++  + ++E   L+Sip+ +   + + ++ ++ +   a ++g+pp+p+  + a aaa+ +++++++++ + +  ++
  KOO23756.1  23 ADGLIDIIEFLtLASIPEGQGPVSPTRNSFHEINRlaARQSGEPPQPQPPASAPAAAPSAPSTEETDN-DGSVGKK 97 
                 5566788998889****766666665666666555544444555444444444444333333333333.3222233 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (270 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       334  (0.018629); expected 358.6 (0.02)
Passed bias filter:                      246  (0.0137208); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.41u 0.24s 00:00:00.64 Elapsed: 00:00:00.39
# Mc/sec: 2061.79
//
Query:       KOO23757.1  [L=685]
Description: biotin synthase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.3e-18   66.9   0.1    5.2e-18   65.0   0.0    2.1  2  BATS         Biotin and Thiamin Synthesis associated domain
    2.8e-13   50.6   0.3    5.1e-13   49.7   0.3    1.5  1  Radical_SAM  Radical SAM superfamily
  ------ inclusion threshold ------
        0.9    9.8   5.7       0.72   10.1   0.1    3.1  3  DUF4157      Domain of unknown function (DUF4157)


Domain annotation for each model (and alignments):
>> BATS  Biotin and Thiamin Synthesis associated domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.0      0.68   4.1e+03      29      49 ..     459     479 ..     437     486 .. 0.78
   2 !   65.0   0.0   8.7e-22   5.2e-18       1      86 []     566     657 ..     566     657 .. 0.98

  Alignments for each domain:
  == domain 1  score: -2.0 bits;  conditional E-value: 0.68
                 CCCTCHH-HHHHHHHHHCCT- CS
        BATS  29 illsgResaefrdqlllklGa 49 
                 il+  Re  +++++++++lG+
  KOO23757.1 459 ILSMVREVKAMDMEVCCTLGM 479
                 555568888888888878885 PP

  == domain 2  score: 65.0 bits;  conditional E-value: 8.7e-22
                 E--B----TCCCC...........HHHHHHHHHHSTTSE.CCCTCHH-HHHHHH.HHHCCT--EEE-C---TTTGGGSESSTT-TCCCCHHHHHHTT-E CS
        BATS   1 siprlrpikdtpl...........lkiiaalRlllPkag.illsgResaefrdq.lllklGansisagsktevggyaflttdgrsleedvkmleelGle 86 
                 ++++l+pi++tpl           +++ia++R+++Pk+  +l++gR s +  +q +++++Gansi++g+k       +ltt++ +++ d +++++lGl+
  KOO23757.1 566 PVNALVPIEGTPLtdysppdvfqmARTIATARIVMPKSVvRLSAGRLSFSPLEQaVMFMAGANSIFTGDK-------LLTTPNPDFDADGELFQSLGLK 657
                 89*******************************************************************9.......********************85 PP

>> Radical_SAM  Radical SAM superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.7   0.3   8.5e-17   5.1e-13       3     163 ..     393     551 ..     391     555 .. 0.79

  Alignments for each domain:
  == domain 1  score: 49.7 bits;  conditional E-value: 8.5e-17
                  EESEESS--TTTSCCTT.HHHHHHHHHHHHHHHHHHHHHHHHHTTSEEEEEE......SSTGGGSTTHHHHHHHHHHTCCCTEEEEEEECSSCHGHHH CS
                  xxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx......xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Radical_SAM   3 vtrgCnlrCsfCarpet.vrregrgrslsveeileevkelkaekgvkevilg......ggepllypdfvellerlaklavpgiritvetngtlpdeek 93 
                   t gC+ +C++Ca+++  + + +    ++v +++e +k++ +  g   + +g      gg   +  ++   l + ++   + + + v +  +++++e+
   KOO23757.1 393 KTGGCTEDCKYCAQSTRyKTSVKATPLMPVMDVIEAAKRA-KQAGSTRFCMGtawrelGGKKAMFNKI---LSMVREV--KAMDMEVCCTLGMVTKEQ 484
                  588************9887778888889999999999999.466755555554888887777774444...4444444..355566666666666*** PP

                  HHHHHHTT-SEEEEEEBSSSHHHHHHHHTCTSHHHHHHHHHHHHHHTTSETEEEEEEEBTTTSHHHHHHH CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Radical_SAM  94 lerllelgvdrvslgleaaddekvlklmnrghtfeevlealeklreagikrvvdrivglpGendeeleel 163
                  +  l+e+g++ ++++l++  +  + + +  + +++++l+++ + r+ag+  v+ + +++ Ge+++++  l
   KOO23757.1 485 AVQLKEAGLTAYNHNLDTSREH-YSNVI-TTRSYDDRLQTIANVRAAGLT-VCCGGILGLGETEDDRIGL 551
                  **********************.*****.99*******************.7777777777999997655 PP

>> DUF4157  Domain of unknown function (DUF4157)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.5   0.1      0.12   7.4e+02      23      48 ..      30      54 ..      12      66 .. 0.75
   2 ?   10.1   0.1   0.00012      0.72       8      48 ..     181     220 ..     177     246 .. 0.78
   3 ?   -1.1   0.3      0.37   2.2e+03       7      29 ..     265     291 ..     261     341 .. 0.49

  Alignments for each domain:
  == domain 1  score: 0.5 bits;  conditional E-value: 0.12
     DUF4157 23 vhtgsaaaraaralgAqAfTlgndiv 48
                ++++ + a+a  + gAqA Tl +++v
  KOO23757.1 30 IQED-TVAEAEVEKGAQASTLAKEVV 54
                5555.455566677899999999887 PP

  == domain 2  score: 10.1 bits;  conditional E-value: 0.00012
     DUF4157   8 aemerafgadlsdVrvhtgsaaaraaralgAqAfTlgndiv 48 
                 ++me+++ ++l +Vr+ ++ +a++ a + + + + l n+iv
  KOO23757.1 181 SKMESRLRQELAKVRMVQD-DAQTKAVEAQDRGMSLNNEIV 220
                 68****************9.566666666667777777776 PP

  == domain 3  score: -1.1 bits;  conditional E-value: 0.37
     DUF4157   7 raemerafgadlsdVrvhtg....saa 29 
                 ra+m++ f+a+    r + +    +aa
  KOO23757.1 265 RAKMASEFEAAAAVERQQADayraEAA 291
                 556666666554444444443221222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (685 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       931  (0.051927); expected 358.6 (0.02)
Passed bias filter:                      374  (0.0208601); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.58u 0.27s 00:00:00.85 Elapsed: 00:00:00.40
# Mc/sec: 5076.93
//
Query:       KOO23758.1  [L=480]
Description: hypothetical protein Ctob_002143 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.29   11.4   3.1       0.98    9.7   3.1    1.9  1  Phasin_2  Phasin protein


Domain annotation for each model (and alignments):
>> Phasin_2  Phasin protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   3.1   5.5e-05      0.98       2      64 ..      49     109 ..      45     123 .. 0.81

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 5.5e-05
    Phasin_2   2 qfaaaakknlealealaslalegaeklaelqleaarasleeslaaakallsa.kdpqellelqs 64 
                 ++ a + ++++ + a++++ ++ga+++ +  ++ a+a   ++++ aka+ +a +d+++++   +
  KOO23758.1  49 KVRAVGTATVDGAKAVGTATFDGAKAVGTATFDGAKAVGTATVDGAKAVGTAtRDAAAAA---A 109
                 56778889999999**********************************999944544443...3 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (480 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       611  (0.0340789); expected 358.6 (0.02)
Passed bias filter:                      348  (0.0194099); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.23s 00:00:00.69 Elapsed: 00:00:00.37
# Mc/sec: 3858.89
//
Query:       KOO23759.1  [L=485]
Description: phytanoyl- dioxygenase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
      2e-23   83.8   0.0    3.9e-23   82.8   0.0    1.5  1  PhyH            Phytanoyl-CoA dioxygenase (PhyH)
    0.00011   23.1   0.0    0.00027   21.8   0.0    1.7  1  2OG-FeII_Oxy_3  2OG-Fe(II) oxygenase superfamily
     0.0002   21.6   1.5     0.0054   17.0   1.3    2.3  2  HD              HD domain
     0.0019   18.6   0.0      0.028   14.8   0.0    2.4  2  2OG-FeII_Oxy_5  Putative 2OG-Fe(II) oxygenase
  ------ inclusion threshold ------
      0.013   15.1   0.0      0.019   14.5   0.0    1.2  1  MIOX            Myo-inositol oxygenase
       0.11   11.9   0.1       0.21   11.0   0.1    1.4  1  HDOD            HDOD domain


Domain annotation for each model (and alignments):
>> PhyH  Phytanoyl-CoA dioxygenase (PhyH)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   82.8   0.0   1.3e-26   3.9e-23       2     209 ..      22     215 ..      21     217 .. 0.77

  Alignments for each domain:
  == domain 1  score: 82.8 bits;  conditional E-value: 1.3e-26
                 HHHSEEEETTSS-HHHHHHHHHHHHHH..HHHCHTTCCSEEEEECEEESTTCCCEE..CCCHHCHHHHTTH.......HHHHHHHHHHHTSCEEEEEEE CS
        PhyH   2 eedGylviegflsaeevealraeieal..ldralesgdkidfffeekaaadedgll..eksinkvghflhp.......rkvadlvrailgqdvyvaavl 89 
                   +Gy++i+++++ +e + l +++e++    + +es++ ++ + +   a+ ++ ++     +        +        k+ +lv ++lg+dv+     
  KOO23759.1  22 SANGYVHIRNVFNSSEAALLSRWVEEIgaWPQSNESKWMHHYEHTVHGARLTRTENivSYLP--------QlgrwlmaGKLPSLVGQLLGDDVFL---Y 109
                 679***************99999999933344444444444444444444444333433333........334455546*************985...5 PP

                 EEEEEEEEE-TTTCB-EEEEE-SGGGSTEESGCCEEEEEEESS-B-TTBT-EEEETTGGGS-CCGTCCHHCSGCCTTSCCCTTTGHGSCEEEE.BTTTE CS
        PhyH  90 qsmyqdifkqpkiGgevqpwHqDstflptdpeesvvgvwialedateenGclrfiPGSHkweegplrrrlpeddteaeddeakkedeeeavpvevkaGd 188
                    +  ++k+p  Gg++++ HqD++ +   +  +++++ +a+e at++nGcl f  G H+ + +    +l+ed    ++ +++ e++  + p+e+++Gd
  KOO23759.1 110 KEKI--NYKYP--GGAGYAAHQDAPAYK--QLSRHLTALVAVERATVANGCLEFAAGRHREGLI----GLTED----GILSQEAEASLDFTPCEMEPGD 194
                 5666..88888..88888*********9..568****************************777....44444....4555688899************ PP

                 EEEEETTSEEEE-TB.SSSXE CS
        PhyH 189 avlfhgrllHgsgaNrsdksR 209
                 + +f++++ H+s++N+s   R
  KOO23759.1 195 VAVFSSYIPHRSRPNHSGERR 215
                 *****************9976 PP

>> 2OG-FeII_Oxy_3  2OG-Fe(II) oxygenase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.8   0.0   8.9e-08   0.00027       5      91 ..     116     217 ..     113     222 .. 0.80

  Alignments for each domain:
  == domain 1  score: 21.8 bits;  conditional E-value: 8.9e-08
                     EE-TT-EEEEE-SS----TT.-.EEEEEEEEE....ET-B--EEE...............................---TT-EEEEE-..B-TEE CS
  2OG-FeII_Oxy_3   5 rygegqeykpHvDnfekeegsgqrrltvllyLnekeseeGGelelyekdk.....................eavkikpkkgrlvlFesdellpHe 78 
                     +y  g +y +H+D+   + ++ +r lt+l+ +++ ++   G le+   ++                     + +  + ++g++++F+s    pH+
      KOO23759.1 116 KYPGGAGYAAHQDAP--AYKQLSRHLTALVAVER-ATVANGCLEFAAGRHregligltedgilsqeaeaslDFTPCEMEPGDVAVFSS--YIPHR 205
                     6888999******97..688899*********64.4458899999777779999999999999999886665555556**********..456** PP

                     E--B.-SS-EEEE CS
  2OG-FeII_Oxy_3  79 vlpvtkggeRlsl 91 
                      +p ++g eR +l
      KOO23759.1 206 SRPNHSG-ERRAL 217
                     ***8665.77765 PP

>> HD  HD domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.2   0.0     0.067     2e+02      50      74 ..      56      80 ..      40      94 .. 0.76
   2 !   17.0   1.3   1.8e-06    0.0054       3      68 ..     323     380 ..     322     401 .. 0.72

  Alignments for each domain:
  == domain 1  score: 2.2 bits;  conditional E-value: 0.067
                HHHCTCCHHHHHHHHHHHHHHHHHH CS
          HD 50 eeefekflaHekvgaeilrevekrl 74
                e ++ ++++H+++ga+++r + +++
  KOO23759.1 56 ESKWMHHYEHTVHGARLTRTENIVS 80
                44488999**********9998876 PP

  == domain 2  score: 17.0 bits;  conditional E-value: 1.8e-06
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTHHHHTS..HHH.HHHCTCCHHHHHHHHHHHH CS
          HD   3 eHsleVaklarrlaedlgeeedrellllaaLlHDiGkgpfgdafekk.eeefekflaHekvgaeilr 68 
                 eH l++a la+r + +         l++a LlHD+G+ +  +++ ++ +   ++ + He  ga  l 
  KOO23759.1 323 EHALQTAALAERAGASDM-------LVTASLLHDVGHLLLDEHMGNDgF--LDHDKQHELAGAAYLA 380
                 8************99888.......*************95442222231..3334456666665555 PP

>> 2OG-FeII_Oxy_5  Putative 2OG-Fe(II) oxygenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.7   0.0      0.23   6.8e+02      39      77 ..      52      90 ..      17      92 .. 0.71
   2 !   14.8   0.0   9.4e-06     0.028      51      96 ..     171     216 ..     137     220 .. 0.76

  Alignments for each domain:
  == domain 1  score: 0.7 bits;  conditional E-value: 0.23
  2OG-FeII_Oxy_5 39 kledprlavelgaparkeeakeenqslvdvkpkeGdlvl 77
                       ++ +++ + +++++ ++ ++++++v++ p+ G+ ++
      KOO23759.1 52 PQSNESKWMHHYEHTVHGARLTRTENIVSYLPQLGRWLM 90
                    445566778888888888888999999999999998775 PP

  == domain 2  score: 14.8 bits;  conditional E-value: 9.4e-06
  2OG-FeII_Oxy_5  51 aparkeeakeenqslvdvkpkeGdlvlFPswlrHevlpnegeeeRi 96 
                     +++  ++++e + +++  + ++Gd+ +F s++ H+  pn++ e R 
      KOO23759.1 171 EDGILSQEAEASLDFTPCEMEPGDVAVFSSYIPHRSRPNHSGERRA 216
                     45555566677778888899**********************9996 PP

>> MIOX  Myo-inositol oxygenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.5   0.0   6.4e-06     0.019      54      95 ..     316     356 ..     298     387 .. 0.83

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 6.4e-06
        MIOX  54 dvdlsqiehllqtaeairkdypdkdWlqltglihdlGkvlll 95 
                 d  ++q eh+lqta    +  + +d l  ++l+hd+G +ll 
  KOO23759.1 316 DSVVTQEEHALQTAALAERA-GASDMLVTASLLHDVGHLLLD 356
                 6678999*******988888.*****************9974 PP

>> HDOD  HDOD domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.1     7e-05      0.21      99     139 ..     321     359 ..     302     364 .. 0.80

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 7e-05
                 HHHHHHHHHHHHHHTT-S-HHHHHHHHHTTTHHHHHHHHHS CS
        HDOD  99 slavAlvarelaeelgledpeeaflaGLLhdiGklvllsll 139
                 + + Al   +lae++g +d   +++a LLhd+G l+l + +
  KOO23759.1 321 QEEHALQTAALAERAGASD--MLVTASLLHDVGHLLLDEHM 359
                 5566777788999999977..9*************998766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (485 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       369  (0.0205812); expected 358.6 (0.02)
Passed bias filter:                      313  (0.0174578); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.50u 0.23s 00:00:00.73 Elapsed: 00:00:00.39
# Mc/sec: 3719.49
//
Query:       KOO23760.1  [L=2116]
Description: fibronectin type iii domain protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.9e-60  200.6  26.0    4.1e-07   30.3   0.2   13.5 13  fn3              Fibronectin type III domain
    1.1e-10   41.9  20.5    5.1e-06   27.0   0.2    9.5  9  Pur_ac_phosph_N  Purple acid Phosphatase, N-terminal domain


Domain annotation for each model (and alignments):
>> fn3  Fibronectin type III domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.3   0.1   8.9e-11     8e-07      12      80 ..     193     269 ..     184     274 .. 0.88
   2 ?   -2.5   0.0      0.76   6.8e+03       6      33 ..     464     491 ..     462     493 .. 0.81
   3 !    7.4   0.0    0.0006       5.4      61      84 ..     564     587 ..     535     588 .. 0.82
   4 !   20.5   0.6   5.1e-08   0.00046       4      80 ..     617     690 ..     614     695 .. 0.78
   5 !   30.3   0.2   4.5e-11   4.1e-07       3      85 .]     710     793 ..     708     793 .. 0.93
   6 !   30.1   0.0   5.1e-11   4.6e-07      25      79 ..     842     896 ..     838     901 .. 0.93
   7 !   20.8   0.1     4e-08   0.00036       2      85 .]     934    1038 ..     933    1038 .. 0.90
   8 !   19.0   0.0   1.5e-07    0.0014       6      81 ..    1058    1156 ..    1055    1158 .. 0.80
   9 !   13.1   0.2     1e-05     0.092       7      82 ..    1198    1284 ..    1189    1287 .. 0.78
  10 !   24.4   0.0   3.2e-09   2.8e-05      12      79 ..    1317    1383 ..    1314    1390 .. 0.87
  11 !    9.4   0.0   0.00015       1.3       1      28 [.    1601    1629 ..    1601    1637 .. 0.84
  12 ?   -0.9   0.0      0.25   2.2e+03      62      85 .]    1717    1740 ..    1704    1740 .. 0.86
  13 ?   -3.2   0.0       1.2   1.1e+04      24      37 ..    1784    1798 ..    1771    1805 .. 0.76

  Alignments for each domain:
  == domain 1  score: 29.3 bits;  conditional E-value: 8.9e-11
                 SSSEEEEEEE-CSSSSSTEEEEEEEEEETTSTS........TEEEEEECSTSSEEEEESSSTTEEEEEEEEEEETSE CS
         fn3  12 tstsltvsWeppkdgggpitgYeveyrekgsee........ewneftvprtttsvtltgLkpgteYevrVqavnggg 80 
                 + t+l +sW++p + g+ ++ Y+ +++++  ++        +++ ++ p++t s+t+ gL+pgt+Y +rV + n++g
  KOO23760.1 193 NQTQLALSWSAPVSNGAAVSTYRQTCEDQPVGNylvstwrqADTVQHTPANTLSATMMGLTPGTTYLCRVGSNNTAG 269
                 899***********************7776666779999999999999**********************9999885 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 0.76
                 EEEEEESSSEEEEEEE-CSSSSSTEEEE CS
         fn3   6 lsvsevtstsltvsWeppkdgggpitgY 33 
                 +s+  v ++++t+s++ p + g+ +++Y
  KOO23760.1 464 VSILGVLDRKVTISFTTPASNGQAVSSY 491
                 5667777899********9888888777 PP

  == domain 3  score: 7.4 bits;  conditional E-value: 0.0006
                 ESSSTTEEEEEEEEEEETSEEEEE CS
         fn3  61 tgLkpgteYevrVqavngggegpe 84 
                 + L+p+ +Y++ V+a ngg +g++
  KOO23760.1 564 SMLEPNVNYSLIVRAENGGAGGGP 587
                 679***************987766 PP

  == domain 4  score: 20.5 bits;  conditional E-value: 5.1e-08
                 CEEEEEEESSSEEEEEEE-CSSSSSTEEEEEEEEEETTSTSTEEEEEECSTSS.EEEEESSSTTEEEEEEEEEEETSE CS
         fn3   4 snlsvsevtstsltvsWeppkdgggpitgYeveyrekgseeewneftvprttt.svtltgLkpgteYevrVqavnggg 80 
                 s + ++++ts+s+  sW      +g   gY v++++ ++++  +   v + t  + t+ gL+p++  ++rVqa+ g+ 
  KOO23760.1 617 STPIAINTTSRSIKWSWLTY---SGANNGYFVTLETRNQTG-GVVTFVQAATGlTTTFMGLTPSMVVTCRVQARVGAQ 690
                 55555555555555555555...*****************9.7777777777779******************98874 PP

  == domain 5  score: 30.3 bits;  conditional E-value: 4.5e-11
                 E.CEEEEEEESSSEEEEEEE-CSSSSSTEEEEEEEEEETTSTSTEEEEEECSTSSEEEEESSSTTEEEEEEEEEEETSEEEEEE CS
         fn3   3 P.snlsvsevtstsltvsWeppkdgggpitgYeveyrekgseeewneftvprtttsvtltgLkpgteYevrVqavngggegpes 85 
                 P   ++ ++ ++t++tvsW   +d g p+t+Y++e+ +++s  e+ +  vp+ +ts++l+gL ++ +Y ++V a n  g+gp+s
  KOO23760.1 710 PtAAPTYTDLRTTNATVSWLVAHDNGLPLTNYTLELTTSTSYAETFRTVVPAWQTSFQLHGLMANVPYLLKVSASNILGQGPFS 793
                 5467888999********************************99999999999****************************998 PP

  == domain 6  score: 30.1 bits;  conditional E-value: 5.1e-11
                 SSSSTEEEEEEEEEETTSTSTEEEEEECSTSSEEEEESSSTTEEEEEEEEEEETS CS
         fn3  25 dgggpitgYeveyrekgseeewneftvprtttsvtltgLkpgteYevrVqavngg 79 
                 ++g+pit+++++yr+ + ++++++ft+    t++++ gL+pg++Y++r++a+n +
  KOO23760.1 842 TLGAPITNWRIQYRNLDVQSAPVTFTLGTAGTTAEVLGLEPGRPYQLRIAAYNSV 896
                 5689**********************9999999********************87 PP

  == domain 7  score: 20.8 bits;  conditional E-value: 4e-08
                  CECEEEEEEESSSEEEEEEE-CSSSSSTEEEEEEEEEETTSTS.....................TEEEEEECSTSSEEEEESSSTTEEEEEEEEEEE CS
         fn3    2 aPsnlsvsevtstsltvsWeppkdgggpitgYeveyrekgsee.....................ewneftvprtttsvtltgLkpgteYevrVqavn 77  
                  aP+ + + e ++  l+v W + +d g++it+Y+v    + ++                      +++  +vp+  ++v+ ++L p+t+Y ++V a+n
  KOO23760.1  934 APEAVVLNEAQGYILRVGWLANFDNGDNITSYTVYTNAMATPFvldrqspnlislaamldieglVPTGWSVPAVVSQVQYSNLIPNTPYWFQVSARN 1030
                  79999999999999********************776665555888999999999999999999888888****99********************* PP

                  TSEEEEEE CS
         fn3   78 gggegpes 85  
                   +g +p+s
  KOO23760.1 1031 SAGDSPRS 1038
                  ***99987 PP

  == domain 8  score: 19.0 bits;  conditional E-value: 1.5e-07
                  EEEEEESSSEEEEEEE-CSSSSSTEEEEEEEEEETTSTS.........................TEEEEEECSTSSEEEEESSSTTEEEEEEEEEEE CS
         fn3    6 lsvsevtstsltvsWeppkdgggpitgYeveyrekgsee.........................ewneftvprtttsvtltgLkpgteYevrVqavn 77  
                  ls+ ++t+ s+ v+W  p+d g pi++Ye++ r +++                           + ++  + ++   +++tgL+    Ye++V+a+n
  KOO23760.1 1058 LSAPSRTDASIAVRWVSPRDNGMPIQHYELRMRCTSQSVsanpgpgatcpyadannpsaalgggRLINAAIQGN--VFVVTGLQQALSYEFSVRAYN 1152
                  667778999*********************9955533336889******9998888888887444444445555..5******************** PP

                  TSEE CS
         fn3   78 ggge 81  
                  + ++
  KOO23760.1 1153 ALTN 1156
                  8765 PP

  == domain 9  score: 13.1 bits;  conditional E-value: 1e-05
                  EEEEESSSEEEEEEE-CSSSSSTEEEEEEEEEETTSTS...........TEEEEEECSTSSEEEEESSSTTEEEEEEEEEEETSEEE CS
         fn3    7 svsevtstsltvsWeppkdgggpitgYeveyrekgsee...........ewneftvprtttsvtltgLkpgteYevrVqavngggeg 82  
                  +v ++t++ + v++   +  gg++++Y+v++  ++ ++             ++  + ++++s+ +t L  g++ +++Vqa+n+ g++
  KOO23760.1 1198 RVYNQTTSGFIVEFPVAEANGGTLSNYSVTVVYSTAPNanpnrrqlsisTVTHTMAASSSPSASFTSLPSGANCTISVQAQNEFGWS 1284
                  344559999********9*************666666667789999997444444555555*********************99766 PP

  == domain 10  score: 24.4 bits;  conditional E-value: 3.2e-09
                  SSSEEEEEEE-CSSSSSTEEEEEEEEEETTSTSTEEEEEECSTSSEEEEESSSTTEEEEEEEEEEETS CS
         fn3   12 tstsltvsWeppkdgggpitgYeveyrekgseeewneftvprtttsvtltgLkpgteYevrVqavngg 79  
                  +s++l+v W+pp+  g+ it+Y++ +  +  + + +  ++ +++ +++  gL pgt+ +++V+a n+ 
  KOO23760.1 1317 RSSTLHVVWDPPFAYGSVITSYTLIVDGVPRTLPVHPNNLGGSS-QFVYAGLDPGTRHNFSVAATNEC 1383
                  589***********************999888866777777777.*******************9986 PP

  == domain 11  score: 9.4 bits;  conditional E-value: 0.00015
                  TCECEEEEEEESSSEEEEEEE-CS.SSSS CS
         fn3    1 saPsnlsvsevtstsltvsWeppk.dggg 28  
                  +aPs+l+v++vt++ ++ +W++p  + +g
  KOO23760.1 1601 DAPSDLRVTNVTGSVIQYEWTAPVrPEDG 1629
                  69*********************765555 PP

  == domain 12  score: -0.9 bits;  conditional E-value: 0.25
                  SSSTTEEEEEEEEEEETSEEEEEE CS
         fn3   62 gLkpgteYevrVqavngggegpes 85  
                  +L p t+++  ++ +n+ g+g +s
  KOO23760.1 1717 QLPPATQFSAVLRWRNERGWGAWS 1740
                  6999*****************998 PP

  == domain 13  score: -3.2 bits;  conditional E-value: 1.2
                  S.SSSSTEEEEEEEE CS
         fn3   24 k.dgggpitgYevey 37  
                  + + g+pi +Yev++
  KOO23760.1 1784 SsTNGQPILQYEVRL 1798
                  347899999999986 PP

>> Pur_ac_phosph_N  Purple acid Phosphatase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.0   0.2   5.6e-10   5.1e-06       8      84 ..     189     267 ..     184     284 .. 0.85
   2 ?   -2.0   0.0      0.61   5.5e+03       9      33 ..     467     491 ..     459     512 .. 0.77
   3 ?   -2.0   4.4      0.64   5.7e+03      10      79 ..     718     781 ..     615     797 .. 0.54
   4 ?   -0.1   0.0      0.16   1.4e+03      62      84 ..     873     895 ..     849     926 .. 0.80
   5 !    6.5   0.0    0.0014        12      54      85 ..    1001    1033 ..     940    1045 .. 0.69
   6 !    4.6   0.0    0.0053        47       7      88 ..    1059    1167 ..    1050    1170 .. 0.73
   7 ?    3.3   0.2     0.013   1.2e+02      12      92 ..    1203    1289 ..    1192    1290 .. 0.79
   8 ?    1.7   0.0     0.044     4e+02      61      94 .]    1359    1397 ..    1329    1397 .. 0.78
   9 ?   -1.6   0.0      0.47   4.2e+03      58      83 ..    1554    1581 ..    1512    1590 .. 0.71

  Alignments for each domain:
  == domain 1  score: 27.0 bits;  conditional E-value: 5.6e-10
  Pur_ac_phosph_N   8 ltedtstsmtvsWitpektkksvvrygtssda..lestaeatsstyettnyksgyshkatltgLepgttYyYrvgddeg 84 
                      +++ ++t+++ sW  p +++++v  y+++ ++  + +    t ++ +t + +  ++ +at+ gL+pgttY  rvg++++
       KOO23760.1 189 VGTPNQTQLALSWSAPVSNGAAVSTYRQTCEDqpVGNYLVSTWRQADTVQHTPANTLSATMMGLTPGTTYLCRVGSNNT 267
                      677789************9999999999865545778888899999999***************************985 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 0.61
  Pur_ac_phosph_N   9 tedtstsmtvsWitpektkksvvry 33 
                       +  ++ +t+s++tp++++++v  y
       KOO23760.1 467 LGVLDRKVTISFTTPASNGQAVSSY 491
                      5555788999999999988887666 PP

  == domain 3  score: -2.0 bits;  conditional E-value: 0.64
  Pur_ac_phosph_N  10 edtstsmtvsWitpektkksvvrygtssdalestaeatsstyettnyksgyshkatltgLepgttYyYrv 79 
                      +  +t  tvsW    +++ +   y  + + ++s ae  +      + +  ++++ +l+gL ++  Y  +v
       KOO23760.1 718 DLRTTNATVSWLVAHDNGLPLTNYTLELTTSTSYAE--TF----RTVVPAWQTSFQLHGLMANVPYLLKV 781
                      222333344444433333333333333332222222..11....34556666666666666666666555 PP

  == domain 4  score: -0.1 bits;  conditional E-value: 0.16
  Pur_ac_phosph_N  62 hkatltgLepgttYyYrvgddeg 84 
                      ++a++ gLepg  Y  r+ + ++
       KOO23760.1 873 TTAEVLGLEPGRPYQLRIAAYNS 895
                      679999*********99976654 PP

  == domain 5  score: 6.5 bits;  conditional E-value: 0.0014
  Pur_ac_phosph_N   54 tnyksgyshkatltgLepgttYyYrvgddeg.g 85  
                        +++   + +++ ++L p+t Y ++v ++++ g
       KOO23760.1 1001 GWSVPAVVSQVQYSNLIPNTPYWFQVSARNSaG 1033
                       666777889999**************9997652 PP

  == domain 6  score: 4.6 bits;  conditional E-value: 0.0053
  Pur_ac_phosph_N    7 sltedtstsmtvsWitpektkksvvrygtssdalestaeatsstyet.................tnyksgyshkatltgLepgttYyYrvgd 81  
                       s  + t+ s++v W++p +++ ++  y+   + +++++ a+     t                   +     +  ++tgL++   Y ++v++
       KOO23760.1 1059 SAPSRTDASIAVRWVSPRDNGMPIQHYELRMRCTSQSVSANPGPGATcpyadannpsaalgggrLINAAIQGNVFVVTGLQQALSYEFSVRA 1150
                       5556688999*******999999999999888877777777444333455668888888888875555556666889999999999999988 PP

  Pur_ac_phosph_N   82 deg..........gwSe 88  
                        +           gwS+
       KOO23760.1 1151 YNAltnglvggpnGWSP 1167
                       76655566666666665 PP

  == domain 7  score: 3.3 bits;  conditional E-value: 0.013
  Pur_ac_phosph_N   12 tstsmtvsWitpektkks......vvrygtssdalestaeatsstyettnyksgyshkatltgLepgttYyYrvgddeg.gwSevysf 92  
                       t++ ++v +   e+++ +      +v y+t+++a+ ++ + ++st++ ++     s +a +t+L  g     +v ++++ gwS   +f
       KOO23760.1 1203 TTSGFIVEFPVAEANGGTlsnysvTVVYSTAPNANPNRRQLSISTVT-HTMAASSSPSASFTSLPSGANCTISVQAQNEfGWSVPATF 1289
                       555556666555543333444444899*******9999999999987.689999999******************998889*998887 PP

  == domain 8  score: 1.7 bits;  conditional E-value: 0.044
  Pur_ac_phosph_N   61 shkatltgLepgttYyYrvgddeg.....gwSevysfkT 94  
                       s + +  gL+pgt+  ++v ++++     ++S +  f T
       KOO23760.1 1359 SSQFVYAGLDPGTRHNFSVAATNEccgkgAFSATVLFET 1397
                       5667788************77766566668888877766 PP

  == domain 9  score: -1.6 bits;  conditional E-value: 0.47
  Pur_ac_phosph_N   58 sgyshkatltg..LepgttYyYrvgdde 83  
                       +g++ ++++ +  L p+t Y  +  +++
       KOO23760.1 1554 TGFQCTYVIAEgrLSPDTMYLVQAITTN 1581
                       4444444444336999999988876655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (2116 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       746  (0.0416086); expected 358.6 (0.02)
Passed bias filter:                      498  (0.0277762); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 1.04u 0.26s 00:00:01.30 Elapsed: 00:00:00.43
# Mc/sec: 14643.45
//
Query:       KOO23761.1  [L=258]
Description: arl8-family small gtpase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.1e-31  108.7   0.0    2.9e-31  108.3   0.0    1.1  1  Arf        ADP-ribosylation factor family
      5e-07   29.5   0.0    4.1e-06   26.5   0.0    2.0  1  GTP_EFTU   Elongation factor Tu GTP binding domain
    7.4e-07   28.8   0.0      1e-06   28.3   0.0    1.2  1  SRPRB      Signal recognition particle receptor beta subunit
      1e-06   28.3   0.0    1.3e-06   27.9   0.0    1.1  1  Gtr1_RagA  Gtr1/RagA G protein conserved region
    7.1e-06   26.2   0.0    1.2e-05   25.5   0.0    1.4  1  Roc        Ras of Complex, Roc, domain of DAPkinase
    1.3e-05   25.2   0.0    1.9e-05   24.7   0.0    1.3  1  MMR_HSR1   50S ribosome-binding GTPase
    0.00013   21.6   0.0    0.00022   20.9   0.0    1.4  1  Ras        Ras family
     0.0057   15.9   0.0      0.053   12.7   0.0    2.1  2  G-alpha    G-protein alpha subunit
     0.0067   16.0   0.3       0.01   15.4   0.3    1.3  1  AAA_25     AAA domain


Domain annotation for each model (and alignments):
>> Arf  ADP-ribosylation factor family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  108.3   0.0   1.4e-34   2.9e-31      12     172 ..      19     197 ..      10     200 .. 0.85

  Alignments for each domain:
  == domain 1  score: 108.3 bits;  conditional E-value: 1.4e-34
                 TTEEEEEEEESTTSSHHHHHHHHHHSSCEE.......CSSSSSEEEEEEEETTEEEEEEEE-SSGGGGGGGGGGCTTESEEEEEEETT-CTTHHHHHHH CS
         Arf  12 kkelrilllGLDnaGKtTilkklkleelvt.......tvPTigfnveeleiknlkftvwDvGGqeklRplWknYfektdavifvvDsadreRleeakee 103
                 + +l + + GLD+ GKtT+   l + + +        t PTig  v++ +++++++ +wD+GG+++ R  Wk+  +   a+ifvvD+a+++Rl ea++ 
  KOO23761.1  19 RTKLELAIAGLDSCGKTTLCATLPHASAAGpmmapmqTAPTIGLVVQRARTRGIDLMLWDLGGHHRFRDDWKRHARGCGALIFVVDCANESRLVEARQA 117
                 456778899*************9887664334445559************************************************************* PP

                 HHHHCTSGCCTTSEEEEEEE-TTSTT..SS-HHHHHHHTTGGG.......SS..SSSSEEEEEEBTTTTBTHHHHHHHHH CS
         Arf 104 LkalleeeelkevallvlaNKqDlpe..alseeelrellglee.......lk..gkrkleiqkcsavkgeglkeglewls 172
                 L++lle+  +   +llvlaNK Dl +  +  +ee++   +l e       ++  ++r++++ ++sa++g++l++ ++wl+
  KOO23761.1 118 LQRLLEDPIVGGLPLLVLANKVDLLTpaDRAREEVSGWRALVEqlnlggeVSgsSSRQWSVLGVSATRGTNLDKVVRWLV 197
                 ***********************966114456677766666555444444448799**********************97 PP

>> GTP_EFTU  Elongation factor Tu GTP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.5   0.0   2.1e-09   4.1e-06      66     189 ..      68     197 ..      22     201 .. 0.78

  Alignments for each domain:
  == domain 1  score: 26.5 bits;  conditional E-value: 2.1e-09
                 TCSSEEEEEEEESSSGGGHHHHHHHHHT-SEEEEEEETTTB.....STHHHHHHHHHHHHTTTEEEEEEESCGST..HHHHHHHHHHHHHHHHHHHHHH CS
    GTP_EFTU  66 etkkylinliDtPGHvdFskevirglrvlDgavlvvdaveG.....vepqteevlrlalkegvpiivfiNKmDrl..kaelkeiveevkqklsrkeekl 157
                 +t+   + l D  GH  F ++  r +r +   ++vvd+++        +  +++l+  +  g+p+ v+ NK+D l   ++ +e v+  +  +++ +   
  KOO23761.1  68 RTRGIDLMLWDLGGHHRFRDDWKRHARGCGALIFVVDCANEsrlveARQALQRLLEDPIVGGLPLLVLANKVDLLtpADRAREEVSGWRALVEQLNLGG 166
                 5778888999***************************987654433333444444445556778***********998888888888886664445555 PP

                 HHHHHTTTTTEEEEEEBTTTTBTHHHHHHHHH CS
    GTP_EFTU 158 ekygekgekevpvvfgSalkgegvktllealv 189
                 e+ g ++ ++ +v+ +Sa +g +++++++ lv
  KOO23761.1 167 EVSGSSS-RQWSVLGVSATRGTNLDKVVRWLV 197
                 5566665.69*************999988776 PP

>> SRPRB  Signal recognition particle receptor beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.3   0.0   5.2e-10     1e-06       6     125 ..      24     142 ..      19     151 .. 0.74

  Alignments for each domain:
  == domain 1  score: 28.3 bits;  conditional E-value: 5.2e-10
                 EEEE-STTSSHHHHHHHHHHSS---B---.S..S-EEETTG.....GGTT-SEEEETT-GCCSHHHHHHHHHHGGEEEEEEEEETTS-HHHHHHHHHHH CS
       SRPRB   6 vllvGlsdsGKTslftrLttdsvkktvtS.q..essaalkv..ksekgskltliDfPGheklrqklleklkaksslkglvfvvDStidpkevkevAEll 99 
                 + ++Gl  +GKT+l   L   s+   +++ +  ++++ l v    ++g  l l D+ Gh+++r + + +    +   +l+fvvD + +++ + e    l
  KOO23761.1  24 LAIAGLDSCGKTTLCATLPHASAAGPMMApMqtAPTIGLVVqrARTRGIDLMLWDLGGHHRFRDDWKRH---ARGCGALIFVVDCANESR-LVEARQAL 118
                 679***************9995544443312224444444433578999999***********998776...888*********987766.55666777 PP

                 HHHHHHHHHHTT---EEEEEE-TTST CS
       SRPRB 100 yeilliteklkdavdiliACnKqelf 125
                   +l + +    ++++l+  nK +l 
  KOO23761.1 119 QRLLEDPI--VGGLPLLVLANKVDLL 142
                 77777766..5677777777777765 PP

>> Gtr1_RagA  Gtr1/RagA G protein conserved region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.9   0.0   6.7e-10   1.3e-06       6     131 ..      28     149 ..      23     171 .. 0.75

  Alignments for each domain:
  == domain 1  score: 27.9 bits;  conditional E-value: 6.7e-10
   Gtr1_RagA   6 GksgsGKtsmrsiiFdnylardt...lrlgatidveksevrflgnltlnlwDcgGqeafveeylssqkeeifrnvgvliyVfDvesre.leedletlke 100
                 G  + GKt+++  + +   a  +   ++ + ti +  ++ r ++ ++l lwD+gG ++f ++      ++  r +g+li+V+D+ +++ l e+ + l++
  KOO23761.1  28 GLDSCGKTTLCATLPHASAAGPMmapMQTAPTIGLVVQRAR-TRGIDLMLWDLGGHHRFRDDW-----KRHARGCGALIFVVDCANESrLVEARQALQR 120
                 77777888887777777666555111455667788888876.6789*************9995.....556799**********966446666666666 PP

   Gtr1_RagA 101 ilealrqyspeakvfvlihKmDliqederee 131
                 +le    +   + + vl +K+Dl++   r++
  KOO23761.1 121 LLED--PIVGGLPLLVLANKVDLLTPADRAR 149
                 6664..46778999**********9766643 PP

>> Roc  Ras of Complex, Roc, domain of DAPkinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.5   0.0   6.1e-09   1.2e-05       3     119 ..      25     140 ..      23     141 .. 0.68

  Alignments for each domain:
  == domain 1  score: 25.5 bits;  conditional E-value: 6.1e-09
                 EEESSTTSSHHHHHHCHCT-CCC-EEETTTTEEEEEEECGGSGGCTTBTTTTCEEEEEEEE-SGGCTTTT-HHHHCTSCEEEEEEEGHHHHCHHHHHHH CS
         Roc   3 vlvGdsgvGKtsllkrfvedkfsekekstigvdfltkevtkikgvendkkvkkvklniWDtaGqerfrslhplylreaalailvydsrssenlkeWlke 101
                  + G  + GKt+l+  + + +      + ++         +i  v ++ +++ + l +WD++G+ rfr   + + r+  ++i+v+d  ++++l e  + 
  KOO23761.1  25 AIAGLDSCGKTTLCATLPHASAAGPMMAPMQTAP------TIGLVVQRARTRGIDLMLWDLGGHHRFRDDWKRHARGCGALIFVVDCANESRLVEARQA 117
                 56788899*****999998777644433333322......222233344556799*******************************7766655444444 PP

                 HHHH.....CSSS-EEEEEE-TT CS
         Roc 102 lkkv.....agkspvilvgnkiD 119
                 l++      +g  p+++++nk+D
  KOO23761.1 118 LQRLledpiVGGLPLLVLANKVD 140
                 44431001255668899999999 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.7   0.0   9.8e-09   1.9e-05       2     113 ..      24     137 ..      23     138 .. 0.69

  Alignments for each domain:
  == domain 1  score: 24.7 bits;  conditional E-value: 9.8e-09
                 EEEEESTTSSHHHHHHHHHTS.TEEESSSTTS...SSSEEEEEEEETTEEEEEEECGGCSSHHHHHHHHHHHHHHHHC.TSEEEEEEETTTT.CSHHHH CS
    MMR_HSR1   2 vaivGrpNvGKStLinaltge.kaivsdkpgt...TrdinegrvklkgkeielvDtpGliegaseekglgkaflalee.adlillvvdasee.klkpld 94 
                  ai+G    GK+tL  +l  + +a     p     T+  +  r +++g ++ l+D+ G  +      +++++++++ + + ++++vvd+++e  l + +
  KOO23761.1  24 LAIAGLDSCGKTTLCATLPHAsAAGPMMAPMQtapTIGLVVQRARTRGIDLMLWDLGG-HH------RFRDDWKRHARgCGALIFVVDCANEsRLVEAR 115
                 79****************88744433444444001444444444477999********.55......89*********9*********99553455555 PP

                 HHHHHHHHH...TTSEEEEEEE CS
    MMR_HSR1  95 eeleellee...akkplilvln 113
                 + l++lle+    + pl++++n
  KOO23761.1 116 QALQRLLEDpivGGLPLLVLAN 137
                 6666666545555555666666 PP

>> Ras  Ras family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.9   0.0   1.1e-07   0.00022       4     154 ..      26     194 ..      23     201 .. 0.66

  Alignments for each domain:
  == domain 1  score: 20.9 bits;  conditional E-value: 1.1e-07
                 EEESTTSSHHHHHHHHHHSS......CSSSCTTTSSEEEEEEEEEETTEEEEEEEEEETTSGGGHHHHHHHHTTESEEEEEEETTBHHHHHTHHHHHHH CS
         Ras   4 lvGdsavGKtslllrfvkdk......FkeeyesTigvdfytkeievdgkevkleiwDTAGqeefkslrelyyrdaegillvyditsresfenvkkwvee 96 
                 + G  ++GKt+l     + +       + +  +Tig        +++ + + l +wD  G  +f+   +   r++ +++ v d  +++ + ++++ ++ 
  KOO23761.1  26 IAGLDSCGKTTLCATLPHASaagpmmAPMQTAPTIGLVV----QRARTRGIDLMLWDLGGHHRFRDDWKRHARGCGALIFVVDCANESRLVEARQALQR 120
                 667778888888766554441111112455666665433....33457889*******************************************88888 PP

                 HHHHST.TTSEEEEEEETTTGGG...............G-SS-HHHHHHHH..HHHTSEEEEEBTTTTCTHHHHHH CS
         Ras  97 ikrvae.envpivLvGnKvDlee...............kravsteegeela..kelglkfletSAktnenveeafe 154
                 + +      +p+++++nKvDl +                ++++   g e++  ++ +   l +SA   +n+++++ 
  KOO23761.1 121 LLEDPIvGGLPLLVLANKVDLLTpadrareevsgwralVEQLNL--GGEVSgsSSRQWSVLGVSATRGTNLDKVVR 194
                 766544478************98777776655555333222221..222221133345556666666666666655 PP

>> G-alpha  G-protein alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.3   0.0      0.15     3e+02      23      41 ..      21      39 ..      12      46 .. 0.84
   2 !   12.7   0.0   2.6e-05     0.053     188     282 ..      59     142 ..      51     145 .. 0.86

  Alignments for each domain:
  == domain 1  score: 0.3 bits;  conditional E-value: 0.15
                EEEEEEEESTTSSHHHHHH CS
     G-alpha 23 evkllllGqseSGKsTilk 41
                ++ l + G +++GK+T++ 
  KOO23761.1 21 KLELAIAGLDSCGKTTLCA 39
                5789999*********976 PP

  == domain 2  score: 12.7 bits;  conditional E-value: 2.6e-05
                 --SEEEEEEECT-TEEEEEEEE-SSHHHHHGTCCCTTTECEEEEEEEGGGTT-B-SS-TTSBHHHHHHHHHHCCCC-GGGTTSEEEEEEE-HHHH CS
     G-alpha 188 tvGisetkfevdsklefrivdvgGqrserkkWvpffddvdaiiFlvslsefdqvlyedekvnrleeslklFkeicnnkllkntpiiLflnKlDil 282
                 t+G    + + + ++++ ++d+gG+   r  W+ +  +  a+iF+v ++          +++rl e+ +  + +++ +++   p++++ nK+D+l
  KOO23761.1  59 TIGLVVQRARTR-GIDLMLWDLGGHHRFRDDWKRHARGCGALIFVVDCA----------NESRLVEARQALQRLLEDPIVGGLPLLVLANKVDLL 142
                 555555555555.89999****************************943..........4689******************************98 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.3   5.3e-06      0.01      17     157 ..       5     144 ..       2     164 .. 0.74

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 5.3e-06
      AAA_25  17 apppprrwlvkgllpagelallaGapgtGKttlaldlalavatGkpwlgpvapeqgkVlyvsaEdsedelrrRlravgealrddarllvldlagv.esl 114
                  +pp ++ lv  ll+ +   ++aG   +GKttl+  l +a a G     p+++ +   l+v+   ++ ++   l+ +g ++r+++++  + +    + l
  KOO23761.1   5 DAPPALQTLVSALLRTKLELAIAGLDSCGKTTLCATLPHASAAGP-MMAPMQTAPTIGLVVQRARTR-GIDLMLWDLGGHHRFRDDWKRHAR--GcGAL 99 
                 57999*********999999**********************977.556799999999999999999.**********99987766665542..33556 PP

      AAA_25 115 pLfakdrggtlltadvdaleaaiee..vegvrlvviDplsralgg 157
                   + + +++++l ++ +al++ +e+  v g+ l+v+ +   +l  
  KOO23761.1 100 IFVVDCANESRLVEARQALQRLLEDpiVGGLPLLVLANKVDLLTP 144
                 666666666666667778888777722244667776666655544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (258 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       416  (0.0232026); expected 358.6 (0.02)
Passed bias filter:                      370  (0.020637); expected 358.6 (0.02)
Passed Vit filter:                        51  (0.00284455); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.44u 0.23s 00:00:00.67 Elapsed: 00:00:00.37
# Mc/sec: 2084.51
//
Query:       KOO23762.1  [L=400]
Description: short-chain dehydrogenase reductase sdr [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.9e-24   86.2   1.6    2.6e-18   66.2   0.6    2.1  2  adh_short     short chain dehydrogenase
    6.5e-16   58.6   2.6    1.2e-10   41.3   2.4    2.2  2  adh_short_C2  Enoyl-(Acyl carrier protein) reductase
    4.6e-07   29.9   1.4      1e-06   28.8   1.3    1.6  2  KR            KR domain


Domain annotation for each model (and alignments):
>> adh_short  short chain dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.2   0.6   4.4e-22   2.6e-18       3     138 ..      58     197 ..      56     202 .. 0.88
   2 !   19.0   0.0   1.2e-07   0.00073     145     190 ..     221     266 ..     213     271 .. 0.91

  Alignments for each domain:
  == domain 1  score: 66.2 bits;  conditional E-value: 4.4e-22
                 EEEESTTSHHHHHHHHHHHHTT-EEEEEESCHHHHHHHHHHHHHT...TSEEEEEE-TTTSHHHHHHHHHHHHHHH....SSESEEEE---SS--SSGG CS
   adh_short   3 vlvtGassGIGraiakelakeGakvvvvdrseekleevakelkee...gakalaiqvDvtdreevealvekavkkl....gkldvLvnNAGitgsgpfs 94 
                 + +tGa++GIG++ a +la+ G+ +++++r + k++++++ +k +   ga + ++ +D++  e+ve++ +++++       +l  L  NAG+    +  
  KOO23762.1  58 IAITGATEGIGLEAAAALATFGYATILCARDATKARAAVDYIKVKagsGAVVATVDLDLSAFESVEQAAADIRAASerlgAPLGGLLLNAGV--WPTER 154
                 78**************************************99999865566778888899********99888766445778999*******..33445 PP

                 GCSHHHHHHHHHHHTHHHHHHHHHHHHHHHHCTTEEEEEEEEGG CS
   adh_short  95 elseeewervievNltgvflltravlpamlkqssGrIvnvsSva 138
                 +++++  e  ++vN ++ f l++++lp+m+ + ++rIv+++S a
  KOO23762.1 155 RMTADGLEVGFQVNHVSHFALAELLLPHMV-ADGARIVTTASSA 197
                 677777***********************9.99********987 PP

  == domain 2  score: 19.0 bits;  conditional E-value: 1.2e-07
                 TBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBSSHHHHHH CS
   adh_short 145 gvaaYsAsKaavagltrslakelaptgirvnavaPGlvdTdmakel 190
                 + +aY+ sK a + ++r+la+ + pt+ +  av+PG+v+T + +e 
  KOO23762.1 221 SSSAYGESKLANVLFARALAQRYPPTRLTSLAVHPGVVATSLFREF 266
                 679*************************************998876 PP

>> adh_short_C2  Enoyl-(Acyl carrier protein) reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.3   2.4     2e-14   1.2e-10       1     131 [.      62     198 ..      62     204 .. 0.86
   2 !   15.2   0.0     2e-06     0.012     133     183 ..     217     267 ..     212     274 .. 0.89

  Alignments for each domain:
  == domain 1  score: 41.3 bits;  conditional E-value: 2e-14
                   TTTTSHHHHHHHHHHHTT-EEEEEESSGGH.HHHHHHHHHHTTSE.E...EE--TTSHHHHHHHHHHHHHHH....SSEEEEEE-----EGCSS-GG CS
  adh_short_C2   1 GaasgIGraiAkalaeeGaevvltdlneea.kkrveelaeelgae.v...lecDVtdeeqvealveevvekf....gklDilvnnagiapklkgpfl 88 
                   Ga +gIG ++A ala  G+  +l+ ++  + +++v+ ++ + g+  v   + +D +  e+ve++++++++        l +l+ nag+ p+  ++  
    KOO23762.1  62 GATEGIGLEAAAALATFGYATILCARDATKaRAAVDYIKVKAGSGaVvatVDLDLSAFESVEQAAADIRAASerlgAPLGGLLLNAGVWPT--ER-- 154
                   899*************************9989999999988886643479**************99988877222344789**********..44.. PP

                   GH-HHHHHHHHHHHTHHHHHHHHHHHH.HCTSCCEEEEEEEGGG CS
  adh_short_C2  89 etsreefdraldvnlyslfllakaalp.lmkeggsivnlssvga 131
                    ++ ++++  ++vn  s f+la+ +lp ++++g++iv+++s + 
    KOO23762.1 155 RMTADGLEVGFQVNHVSHFALAELLLPhMVADGARIVTTASSAH 198
                   79*************************66667799****99864 PP

  == domain 2  score: 15.2 bits;  conditional E-value: 2e-06
                   SBSTTTTHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEE--BHCTGGGGST CS
  adh_short_C2 133 rvvpnynaygaaKaalealtrylAvelgpkgiRvNavspgpikTlaasgik 183
                    v+++ +ayg +K a + ++r+lA  + p + +  av+pg+++T + +++k
    KOO23762.1 217 TVWDSSSAYGESKLANVLFARALAQRYPPTRLTSLAVHPGVVATSLFREFK 267
                   5788899*************************************9988776 PP

>> KR  KR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.8   1.3   1.7e-10     1e-06       4      94 ..      59     152 ..      56     200 .. 0.85
   2 ?   -1.9   0.0      0.46   2.7e+03      12      36 ..     175     198 ..     171     218 .. 0.70

  Alignments for each domain:
  == domain 1  score: 28.8 bits;  conditional E-value: 1.7e-10
                 EEETTTSHHHHHHHHHHHHHHS-EEEEE-SS..--HHHHHHHHHHHHTT-EEEE----TT-HHHHHHHHHHHHHHS....S---EEEE------- CS
          KR   4 litGGlGgLGlelarwlaekgarhlvllsRsaaadedskaliaelealgaevevvaaDvsdkdavealleeikaee....ppikGvihaAgvlrd 94 
                  itG++ g+Gle a  la  g +++ l++R+a++ +++ + i+  + +ga v +v++D+s  ++ve++ ++i+a      +p+ G +  Agv  +
  KOO23762.1  59 AITGATEGIGLEAAAALATFGYATI-LCARDATKARAAVDYIKVKAGSGAVVATVDLDLSAFESVEQAAADIRAASerlgAPLGGLLLNAGVWPT 152
                 69*******************9886.7899999999999999999999********************999887664556888999988888755 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 0.46
                 HHHHHHHHHHHHHS-EEEEE-SS.. CS
          KR  12 LGlelarwlaekgarhlvllsRsaa 36 
                 L+  l  +++++gar +   s   +
  KOO23762.1 175 LAELLLPHMVADGARIVTTASSA-H 198
                 67778889999999877666655.3 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (400 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       450  (0.025099); expected 358.6 (0.02)
Passed bias filter:                      352  (0.019633); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.46u 0.23s 00:00:00.69 Elapsed: 00:00:00.38
# Mc/sec: 3142.69
//
Query:       KOO23763.1  [L=240]
Description: calmodulin-like protein 5 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.1e-12   46.7   0.8    0.00024   20.8   0.1    4.1  3  EF-hand_6     EF-hand domain
    2.9e-12   45.5   4.8    1.4e-06   27.5   0.0    3.1  3  EF-hand_5     EF hand
    4.6e-12   46.2   0.3    1.8e-09   37.9   0.2    2.2  2  EF-hand_7     EF-hand domain pair
    5.9e-12   44.2   0.7    0.00019   20.8   0.0    3.2  3  EF-hand_1     EF hand
    1.4e-08   34.4   2.2    8.5e-07   28.7   0.1    3.3  3  EF-hand_8     EF-hand domain pair
     0.0011   19.2   0.1     0.0026   18.1   0.1    1.7  1  SPARC_Ca_bdg  Secreted protein acidic and rich in cysteine Ca
     0.0043   17.9   0.0      0.019   15.8   0.0    1.9  2  EF-hand_11    EF-hand domain
  ------ inclusion threshold ------
      0.024   14.5   0.0      0.051   13.4   0.0    1.6  1  EF-hand_10    EF hand
      0.088   12.8   0.1        0.6   10.1   0.1    2.2  2  EF-hand_4     Cytoskeletal-regulatory complex EF hand


Domain annotation for each model (and alignments):
>> EF-hand_6  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.9   0.0      0.14   2.7e+02      16      26 ..      98     108 ..      67     118 .. 0.62
   2 !   19.4   0.0   3.2e-07   0.00064       4      28 ..     145     169 ..     142     177 .. 0.89
   3 !   20.8   0.1   1.2e-07   0.00024       2      27 ..     179     204 ..     178     217 .. 0.91

  Alignments for each domain:
  == domain 1  score: 1.9 bits;  conditional E-value: 0.14
   EF-hand_6  16 kidaeElrkal 26 
                 ++++e+l +al
  KOO23763.1  98 ELTKEQLNDAL 108
                 45666666665 PP

  == domain 2  score: 19.4 bits;  conditional E-value: 3.2e-07
   EF-hand_6   4 eaFklfDkdgdGkidaeElrkalrk 28 
                 + F+++D dg+G ++++El  al++
  KOO23763.1 145 KTFEQIDADGSGRLSRDELALALKR 169
                 67********************995 PP

  == domain 3  score: 20.8 bits;  conditional E-value: 1.2e-07
   EF-hand_6   2 lreaFklfDkdgdGkidaeElrkalr 27 
                 l+e+F+ +D ++dG +d  E+++ l 
  KOO23763.1 179 LNELFDSMDENRDGRLDLPEFIDGLA 204
                 89********************9986 PP

>> EF-hand_5  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.1       2.2   4.3e+03       1       9 [.      68      76 ..      68      76 .. 0.84
   2 !   27.5   0.0     7e-10   1.4e-06       3      22 ..     145     164 ..     143     168 .. 0.90
   3 !   18.8   0.3   4.1e-07   0.00082       1      21 [.     179     199 ..     179     207 .. 0.92

  Alignments for each domain:
  == domain 1  score: -2.5 bits;  conditional E-value: 2.2
                HHHHHHHH- CS
   EF-hand_5  1 lkdtFqaiD 9 
                ++d+F +iD
  KOO23763.1 68 MRDAFIRID 76
                5799*9999 PP

  == domain 2  score: 27.5 bits;  conditional E-value: 7e-10
                 HHHHHH-SS-SSCE-HHHHH CS
   EF-hand_5   3 dtFqaiDlNgDGkIskeELk 22 
                 +tF++iD++g+G++s++EL 
  KOO23763.1 145 KTFEQIDADGSGRLSRDELA 164
                 69****************95 PP

  == domain 3  score: 18.8 bits;  conditional E-value: 4.1e-07
                 HHHHHHHH-SS-SSCE-HHHH CS
   EF-hand_5   1 lkdtFqaiDlNgDGkIskeEL 21 
                 l+++F+ +D N+DG+++  E+
  KOO23763.1 179 LNELFDSMDENRDGRLDLPEF 199
                 7899****************9 PP

>> EF-hand_7  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.1   0.0    0.0075        15       3      67 ..      67     124 ..      65     127 .. 0.88
   2 !   37.9   0.2   8.8e-13   1.8e-09       6      67 ..     145     200 ..     140     203 .. 0.88

  Alignments for each domain:
  == domain 1  score: 6.1 bits;  conditional E-value: 0.0075
   EF-hand_7   3 klkeaFkelDtdgdgyldkeellrllrkifqgagegsklsdeele.llfkefDtdkdGvisfdEFl 67 
                 ++++aF  +D +  g +++  + + l+        g +l++e+l  +lfk    ++dG+ ++  F+
  KOO23763.1  67 RMRDAFIRIDPRLEGCISRHMVGCTLK------AGGMELTKEQLNdALFKY--VTGDGKFNWKTFC 124
                 68999******************9999......899999999977699999..8899999888887 PP

  == domain 2  score: 37.9 bits;  conditional E-value: 8.8e-13
   EF-hand_7   6 eaFkelDtdgdgyldkeellrllrkifqgagegsklsdeelellfkefDtdkdGvisfdEFl 67 
                   F+++D dg+g+l+++el  +l+      + ++k  +  l +lf+ +D ++dG++++ EF 
  KOO23763.1 145 KTFEQIDADGSGRLSRDELALALK------RINVKAKEGTLNELFDSMDENRDGRLDLPEFI 200
                 56****************997888......77777777789********************7 PP

>> EF-hand_1  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.0      0.92   1.8e+03      13      24 ..     114     125 ..     112     129 .. 0.81
   2 !   20.8   0.0   9.5e-08   0.00019       4      28 ..     145     169 ..     142     170 .. 0.92
   3 !   20.4   0.1   1.2e-07   0.00025       2      28 ..     179     205 ..     178     206 .. 0.92

  Alignments for each domain:
  == domain 1  score: -1.1 bits;  conditional E-value: 0.92
                 SSSEEEHHHHHH CS
   EF-hand_1  13 gdGkIdfeEfke 24 
                 gdGk +++ f++
  KOO23763.1 114 GDGKFNWKTFCS 125
                 9***99988875 PP

  == domain 2  score: 20.8 bits;  conditional E-value: 9.5e-08
                 HHHHHHTTTSSSEEEHHHHHHHHHH CS
   EF-hand_1   4 eiFrefDkDgdGkIdfeEfkellkk 28 
                 + F+ +D Dg+G+++++E+  +lk+
  KOO23763.1 145 KTFEQIDADGSGRLSRDELALALKR 169
                 78********************997 PP

  == domain 3  score: 20.4 bits;  conditional E-value: 1.2e-07
                 HHHHHHHHTTTSSSEEEHHHHHHHHHH CS
   EF-hand_1   2 lkeiFrefDkDgdGkIdfeEfkellkk 28 
                 l+e+F+ +D ++dG++d+ Ef++ l++
  KOO23763.1 179 LNELFDSMDENRDGRLDLPEFIDGLAT 205
                 789*******************99875 PP

>> EF-hand_8  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.7   0.1     0.028        56       4      54 ..      82     129 ..      80     130 .. 0.73
   2 !    7.5   0.0    0.0018       3.5      32      48 ..     147     163 ..     147     169 .. 0.85
   3 !   28.7   0.1   4.3e-10   8.5e-07       2      53 ..     155     204 ..     154     206 .. 0.92

  Alignments for each domain:
  == domain 1  score: 3.7 bits;  conditional E-value: 0.028
   EF-hand_8   4 kItreelrrilrilglkkglseee.vdilfrefDtdgdGkisfeEFcvller 54 
                 +I+r+   ++l++ g++  l++e+  d+lf+++   gdGk +++ Fc  +e+
  KOO23763.1  82 CISRHMVGCTLKAGGME--LTKEQlNDALFKYV--TGDGKFNWKTFCSDVEK 129
                 56666666777777888..88888667777776..68888888888887775 PP

  == domain 2  score: 7.5 bits;  conditional E-value: 0.0018
   EF-hand_8  32 frefDtdgdGkisfeEF 48 
                 f  +D dg+G++s +E 
  KOO23763.1 147 FEQIDADGSGRLSRDEL 163
                 5689***********97 PP

  == domain 3  score: 28.7 bits;  conditional E-value: 4.3e-10
   EF-hand_8   2 kgkItreelrrilrilglkkglseeevdilfrefDtdgdGkisfeEFcvlle 53 
                 +g ++r+el  +l+ +  k    e  + +lf+ +D+++dG++++ EF++ l+
  KOO23763.1 155 SGRLSRDELALALKRINVK--AKEGTLNELFDSMDENRDGRLDLPEFIDGLA 204
                 799**********777999..9**************************9776 PP

>> SPARC_Ca_bdg  Secreted protein acidic and rich in cysteine Ca binding region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.1   0.1   1.3e-06    0.0026       8     111 ..      60     200 ..      53     201 .. 0.69

  Alignments for each domain:
  == domain 1  score: 18.1 bits;  conditional E-value: 1.3e-06
  SPARC_Ca_bdg   8 elaelpeRlrdWlknlleelkereeek...................................ehleelekkeeeknlkeckepvawkFsklDtnsdk 69 
                   el++   R+rd +  +  +l+   +++                                   +  ++ ek  + + +++ + ++a  F+++D +  +
    KOO23763.1  60 ELHNQMVRMRDAFIRIDPRLEGCISRHmvgctlkaggmeltkeqlndalfkyvtgdgkfnwkTFCSDVEKARTASWSEARRLKAAKTFEQIDADGSG 156
                   555555666666666666666555555566666666666666666666666666666666633344445555555556667788899********** PP

  SPARC_Ca_bdg  70 vlsksELapl..raplvklehCikpflescDadkdkkislkEwc 111
                    ls+ ELa    r ++   e   +++++s D ++d++++l E++
    KOO23763.1 157 RLSRDELALAlkRINVKAKEGTLNELFDSMDENRDGRLDLPEFI 200
                   ******985312445678999********************996 PP

>> EF-hand_11  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.1   0.0      0.84   1.7e+03      53      89 ..      99     134 ..      70     139 .. 0.75
   2 !   15.8   0.0   9.6e-06     0.019      23      88 ..     144     209 ..     124     223 .. 0.82

  Alignments for each domain:
  == domain 1  score: -0.1 bits;  conditional E-value: 0.84
                 --HHHH.HHHHHTS-B-TTS-EEHHHHHHHHCS-.--- CS
  EF-hand_11  53 ltdeqf.drlwselpvnakgrlkyqdflsklsiervaa 89 
                 lt eq+ d l++   v   g+++++ f s +   r+a+
  KOO23763.1  99 LTKEQLnDALFK--YVTGDGKFNWKTFCSDVEKARTAS 134
                 677776344554..467889999999999999998887 PP

  == domain 2  score: 15.8 bits;  conditional E-value: 9.6e-06
                 HHHHHHH-TT-SSEE-HHHHHHHHHHHT----HH.HHHHHHHTS-B-TTS-EEHHHHHHHHCS-.-- CS
  EF-hand_11  23 vqefenfdtlksntvsreefraictrrvqiltde.qfdrlwselpvnakgrlkyqdflsklsierva 88 
                 ++ fe++d+  s  +sr+e+ a+  +r+++ + e  ++ l++ +  n  grl  ++f+  l+++ v 
  KOO23763.1 144 AKTFEQIDADGSGRLSRDEL-ALALKRINVKAKEgTLNELFDSMDENRDGRLDLPEFIDGLATQMVM 209
                 578****************8.67888999988773699********************999988553 PP

>> EF-hand_10  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.0   2.6e-05     0.051       1      43 [.     157     199 ..     143     201 .. 0.96

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 2.6e-05
  EF-hand_10   1 kmsfkEvkrlLreiNievddeYAekLFkkcDkSksgrLegeEi 43 
                 ++s +E+   L+ iN+  ++   ++LF   D+ ++grL+  E+
  KOO23763.1 157 RLSRDELALALKRINVKAKEGTLNELFDSMDENRDGRLDLPEF 199
                 689999*9*******************************9997 PP

>> EF-hand_4  Cytoskeletal-regulatory complex EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.0      0.74   1.5e+03      40      66 ..      99     124 ..      70     130 .. 0.71
   2 ?   10.1   0.1    0.0003       0.6      23      66 ..     155     200 ..     139     221 .. 0.81

  Alignments for each domain:
  == domain 1  score: -0.8 bits;  conditional E-value: 0.74
   EF-hand_4  40 leedklekiwdladidedgkldfeefc 66 
                 l++++l+    +  +  dgk++++ fc
  KOO23763.1  99 LTKEQLNDAL-FKYVTGDGKFNWKTFC 124
                 5566665543.3457889999999998 PP

  == domain 2  score: 10.1 bits;  conditional E-value: 0.0003
   EF-hand_4  23 dnkltgdkvapvlk..nskleedklekiwdladidedgkldfeefc 66 
                 + +l+ d++a  lk  n k +e  l++++d  d + dg+ld+ ef+
  KOO23763.1 155 SGRLSRDELALALKriNVKAKEGTLNELFDSMDENRDGRLDLPEFI 200
                 567889999999984466778899*********************7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (240 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       466  (0.0259914); expected 358.6 (0.02)
Passed bias filter:                      418  (0.0233142); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.42u 0.26s 00:00:00.68 Elapsed: 00:00:00.38
# Mc/sec: 1884.44
//
Query:       KOO23764.1  [L=969]
Description: hypothetical protein Ctob_000853 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
  ------ inclusion threshold ------
       0.22   10.5   0.5       0.86    8.6   0.2    1.8  2  LuxE          Acyl-protein synthetase, LuxE


Domain annotation for each model (and alignments):
>> LuxE  Acyl-protein synthetase, LuxE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.4   0.0     0.026   4.6e+02     103     135 ..     710     742 ..     702     754 .. 0.88
   2 ?    8.6   0.2   4.8e-05      0.86     104     165 ..     758     820 ..     736     834 .. 0.79

  Alignments for each domain:
  == domain 1  score: -0.4 bits;  conditional E-value: 0.026
        LuxE 103 kstvlldklsierllravarvmkevlspkdrqi 135
                 ++++  ++++ er   ++  +m+e  s   +q+
  KOO23764.1 710 QAQLTEQRVAYERAFASMREGMREGASAASQQV 742
                 5788999*****************999988886 PP

  == domain 2  score: 8.6 bits;  conditional E-value: 4.8e-05
        LuxE 104 stvlldklsierllravarvmkevlspkdrqielvdldPdrfnatnlgaki.vavkvellyas 165
                  ++  ++++ er + ++  +m+   +  ++q+ l + + +  na  l a   + ++++  ya+
  KOO23764.1 758 KQLDEQRVAYERAMASMNEGMRAGAAISRHQVTLAQTEAEAANALALEAMArAESRAQSSYAA 820
                 4667789*************************************9997654155666666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (969 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2364  (0.131853); expected 358.6 (0.02)
Passed bias filter:                      418  (0.0233142); expected 358.6 (0.02)
Passed Vit filter:                        65  (0.00362541); expected 17.9 (0.001)
Passed Fwd filter:                        15  (0.000836633); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 1.09u 0.33s 00:00:01.42 Elapsed: 00:00:00.45
# Mc/sec: 6457.70
//
Query:       KOO23765.1  [L=1419]
Description: hypothetical protein Ctob_000852, partial [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
  ------ inclusion threshold ------
       0.32   11.3   0.0       0.32   11.3   0.0    6.6  7  HALZ           Homeobox associated leucine zipper
        5.3    7.3   7.7       0.86    9.9   1.3    2.9  2  DRY_EERY       Alternative splicing regulator


Domain annotation for each model (and alignments):
>> HALZ  Homeobox associated leucine zipper
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   2.2      0.41   3.6e+03      21      40 ..     276     298 ..     259     301 .. 0.56
   2 ?   -1.4   0.4      0.32   2.9e+03      28      40 ..     314     326 ..     312     328 .. 0.89
   3 ?    0.9   0.1      0.06   5.3e+02       9      32 ..     387     410 ..     384     421 .. 0.69
   4 ?   11.3   0.0   3.5e-05      0.32       7      35 ..     427     455 ..     425     461 .. 0.90
   5 ?   -1.5   1.3      0.35   3.2e+03      23      42 ..     646     665 ..     641     666 .. 0.66
   6 ?    0.6   0.3     0.073   6.6e+02      17      41 ..     789     813 ..     787     814 .. 0.76
   7 ?   -2.4   0.1      0.63   5.7e+03      30      41 ..    1401    1412 ..    1399    1413 .. 0.66

  Alignments for each domain:
  == domain 1  score: -1.7 bits;  conditional E-value: 0.41
        HALZ  21 ydsLkken...ekLkaelqeLke 40 
                   +L++e+   ++L+ el +L++
  KOO23765.1 276 LKALEAERdasRALREELLTLRA 298
                 33444444111357777777766 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 0.32
        HALZ  28 nekLkaelqeLke 40 
                 +++L a+l+eL++
  KOO23765.1 314 KQQLMAKLAELRQ 326
                 89*********96 PP

  == domain 3  score: 0.9 bits;  conditional E-value: 0.06
        HALZ   9 vLKasYdaLksdydsLkkenekLk 32 
                 +L+as+ +L  ++  L+   e+L 
  KOO23765.1 387 TLRASHASLSGEHATLRTAHEELA 410
                 688888888877777777666664 PP

  == domain 4  score: 11.3 bits;  conditional E-value: 3.5e-05
        HALZ   7 YdvLKasYdaLksdydsLkkenekLkael 35 
                 Y +L  ++ aL + ++sL++en +L a+ 
  KOO23765.1 427 YTSLATKFTALVLAHESLQEENGALVAQQ 455
                 9999**********************995 PP

  == domain 5  score: -1.5 bits;  conditional E-value: 0.35
        HALZ  23 sLkkenekLkaelqeLkekl 42 
                 +L+++ ++L+  l++ +e+l
  KOO23765.1 646 ALEEQVQTLQDDLEKVREQL 665
                 56666677777777766665 PP

  == domain 6  score: 0.6 bits;  conditional E-value: 0.073
        HALZ  17 LksdydsLkkenekLkaelqeLkek 41 
                 L+ ++++  +  +kL+ae+++L+++
  KOO23765.1 789 LTRQVEAAAEREKKLEAEVARLTSQ 813
                 66666666666789********975 PP

  == domain 7  score: -2.4 bits;  conditional E-value: 0.63
        HALZ   30 kLkaelqeLkek 41  
                  +L+ e ++Lk+k
  KOO23765.1 1401 ALRDETNRLKAK 1412
                  566777777776 PP

>> DRY_EERY  Alternative splicing regulator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.6      0.33     3e+03      62      99 ..     317     354 ..     290     384 .. 0.66
   2 ?    9.9   1.3   9.6e-05      0.86      57     112 ..     461     523 ..     450     541 .. 0.67

  Alignments for each domain:
  == domain 1  score: -1.6 bits;  conditional E-value: 0.33
    DRY_EERY  62 seeksseeeeeeeelnyERYrdLiknefeevseeeelk 99 
                    k +e ++ e e+  E  r+L++ e+ +++ e el+
  KOO23765.1 317 LMAKLAELRQIEPEMASEHVRQLAEAEDAAAEAEAELN 354
                 44455566677777777777778777777766444443 PP

  == domain 2  score: 9.9 bits;  conditional E-value: 9.6e-05
    DRY_EERY  57 ekkarseeksseeeeeeeelnyERYrdLiknefeevs.eeeelkqiaeeesfsaek......k 112
                 +++ar++e ++ e++ e++++ ER rdL ++  + ++ ++e   + + ee++++++      +
  KOO23765.1 461 DRSARRDEAEAAERRVERRVETERLRDLGSDPISLAEiQSELQARAQLEERVQRAEeramvaE 523
                 367788889999****************88877777656666666666666555544333221 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1419 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1654  (0.0922528); expected 358.6 (0.02)
Passed bias filter:                      436  (0.0243181); expected 358.6 (0.02)
Passed Vit filter:                        77  (0.00429472); expected 17.9 (0.001)
Passed Fwd filter:                        29  (0.00161749); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 1.34u 0.33s 00:00:01.67 Elapsed: 00:00:00.54
# Mc/sec: 7888.52
//
Query:       KOO23766.1  [L=267]
Description: hypothetical protein Ctob_000855 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
      0.008   15.1   2.8       0.01   14.7   2.8    1.2  1  MDM10          Mitochondrial distribution and morphology prot
  ------ inclusion threshold ------
        3.6    7.3  10.8        5.1    6.8  10.8    1.3  1  RR_TM4-6       Ryanodine Receptor TM 4-6
        3.9    6.5  12.4        5.2    6.1  12.4    1.2  1  Atg14          Vacuolar sorting 38 and autophagy-related subu
        4.5    7.3  12.4        6.2    6.8  12.4    1.1  1  Asp-B-Hydro_N  Aspartyl beta-hydroxylase N-terminal region


Domain annotation for each model (and alignments):
>> MDM10  Mitochondrial distribution and morphology protein 10
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   2.8   2.3e-06      0.01     288     396 ..      14     130 ..      10     190 .. 0.69

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 2.3e-06
       MDM10 288 enstlssrydFNvYSyeSnlslGmeLwrksrkkksseeeeeeeekekeeesvkskkeakkkkkekekeeeks...tfssslekadkeksveesfqakle 383
                 ++s l++r  F v   e +   G+eL +  +k+  ++++ +++e e++ +++ +++++++  +++e ++++      +++ ++++ e++ +++ q+ ++
  KOO23766.1  14 VASVLAARNYFEVIGLEPSRCCGTELKSAYKKTALKRAKMSKDELERQVREMMARQSKQQPMASSEAARKAAeqrVARERERQQRLEREEKQRQQDAMK 112
                 678899********************9999998888888888887777777666555554444333333322222334444444455555555667777 PP

       MDM10 384 Wrldkeekeeek......k 396
                  r+ ++ek+ ++      +
  KOO23766.1 113 -RRAEAEKALNSarnrtpR 130
                 .444444443333444331 PP

>> RR_TM4-6  Ryanodine Receptor TM 4-6
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.8  10.8    0.0011       5.1      72     151 ..      52     135 ..      20     165 .. 0.41

  Alignments for each domain:
  == domain 1  score: 6.8 bits;  conditional E-value: 0.0011
                 XXXXXXXXXXXXXXXXXXXX...XXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXX...........XXXXXXXXXXXXXX CS
    RR_TM4-6  72 Dlseteaeesptpelkkkla...eeeeaeeekeeeeepeaeaeekadaengekeekeke.keeeekeseeeeeekkkkkkaksk 151
                  +s++e e++    + ++ +    +++++ +k++e+    e+e+++  e++ek++++ + k ++e e++ ++ +++  ++ k k
  KOO23766.1  52 KMSKDELERQVREMMARQSKqqpMASSEAARKAAEQRVARERERQQRLEREEKQRQQDAmKRRAEAEKALNSARNRTPRTPKPK 135
                 333333333333222222220012222333333333333333333333333333333332222222222233333322333333 PP

>> Atg14  Vacuolar sorting 38 and autophagy-related subunit 14
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.1  12.4    0.0012       5.2      27     109 ..      44     120 ..      33     176 .. 0.56

  Alignments for each domain:
  == domain 1  score: 6.1 bits;  conditional E-value: 0.0012
       Atg14  27 lrerlaklksekeslkkkiekalegke......eaeqledkiknkkakleelksliadlrerlqelkdklsqlkkeieekkkklaklsd 109
                 +++ l++ k  k++l++++ +++++++      +           + k+ e  +++a+ rer q+l+   +q+++   +++++  + ++
  KOO23766.1  44 KKTALKRAKMSKDELERQVREMMARQSkqqpmaS--------SEAARKAAE--QRVARERERQQRLEREEKQRQQDAMKRRAE--AEKA 120
                 78999*********************93333331........222222222..222222222222222222222222222222..2222 PP

>> Asp-B-Hydro_N  Aspartyl beta-hydroxylase N-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.8  12.4    0.0014       6.2     114     210 ..      49     151 ..      32     178 .. 0.51

  Alignments for each domain:
  == domain 1  score: 6.8 bits;  conditional E-value: 0.0014
  Asp-B-Hydro_N 114 eeivvkeeeeegieeepqlee.ekkllkedsderqeeleagkvkeevEeslkveetvseeakkdmkekaseeenekskepve.......eaekeka 201
                    + + ++++e e++ +e    + +++ +++ +  r+++++ +++++e  + l+ ee ++++++   k +a+ e++ +s    +        +e+   
     KOO23766.1  49 KRAKMSKDELERQVREMMARQsKQQPMASSEAARKAAEQRVARERERQQRLEREEKQRQQDAM--KRRAEAEKALNSARNRTprtpkpkAEEVLDP 142
                    334445556566655554444044455555555555555555666655556556555555544..4444444443333322210121122233333 PP

  Asp-B-Hydro_N 202 eakeveeed 210
                    ea +v++e 
     KOO23766.1 143 EAIRVAKER 151
                    444444443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (267 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2956  (0.164873); expected 358.6 (0.02)
Passed bias filter:                      964  (0.0537676); expected 358.6 (0.02)
Passed Vit filter:                       208  (0.0116013); expected 17.9 (0.001)
Passed Fwd filter:                        24  (0.00133861); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.73u 0.33s 00:00:01.06 Elapsed: 00:00:00.42
# Mc/sec: 1926.33
//
Query:       KOO23767.1  [L=1026]
Description: insulin-degrading enzyme [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.3e-59  201.0   0.0    3.1e-59  200.6   0.0    1.2  1  Peptidase_M16_M  Middle or third domain of peptidase_M16
    6.1e-39  133.4   0.0    4.9e-35  120.7   0.0    3.5  4  Peptidase_M16    Insulinase (Peptidase family M16)
    7.2e-29  101.1   0.0    4.9e-14   52.8   0.0    3.9  4  Peptidase_M16_C  Peptidase M16 inactive domain
  ------ inclusion threshold ------
       0.54   10.1   4.9       0.12   12.2   0.9    2.0  2  Apolipoprotein   Apolipoprotein A1/A4/E domain


Domain annotation for each model (and alignments):
>> Peptidase_M16_M  Middle or third domain of peptidase_M16
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  200.6   0.0     7e-63   3.1e-59       1     278 [.     448     736 ..     448     737 .. 0.95

  Alignments for each domain:
  == domain 1  score: 200.6 bits;  conditional E-value: 7e-63
  Peptidase_M16_M   1 FrFkekeepsdyvsslaenmqkyppedvlsgpylleeydpelikellss.Ltpenarivlvske....tdekekwygteYsvekiseelleewk 89 
                      F+++e ++psd++++++ ++ +++p++++sgp+l+ +  +     +l+   +p na+i+lv+k+    ++ +e++ygt+Y++ +++ e +e w+
       KOO23767.1 448 FEYAEPSRPSDFATDISGSLPFFEPDRWISGPNLVGSGTEVGAAFMLDWtRQPRNALITLVAKQlevpASLTEPIYGTKYATLPLTRE-VEAWE 540
                      99**********************************************9568***********7655437***************988.566** PP

  Peptidase_M16_M  90 saeeneeLhLPepNpFiptdfslk.......kesesepakaPelirdtelvrlWykkDdtFkvPkasvrlklrsplasksprnavltelfvell 176
                      +    +eL+ P pNpFiptdf lk         + + p+ aP+++ + ++++l + +D tFk P+a+  + +rspl+++s+++++ ++lf++ l
       KOO23767.1 541 ATISPAELRPPLPNPFIPTDFALKcggaraaCIQPARPEVAPTVLANRPGLTLHFLQDATFKRPRAFAFFLFRSPLLYASAEASITAQLFQSTL 634
                      7777799*****************99987653355599******************************************************** PP

  Peptidase_M16_M 177 kdslneylydAelAglsyslssskeglelsvsGYndklpvLlekvleklknfeikedrFevikekllrelknfklekpyqqarellsslleeka 270
                       d+l+e +y+A lAgl+  + ++ +gl l++sGY+ +lp+Ll+ v  ++k+  +++++Fe+++e l++el nf++++p  +++++++ +le ++
       KOO23767.1 635 GDTLQESTYQAGLAGLGAGVGAEYNGLFLTASGYSSRLPELLQYVAAQVKTAALEPSVFERTREALQQELANFEKRQPVGLCSYYRQLALETPR 728
                      **************************************************99****************************************** PP

  Peptidase_M16_M 271 wtleelle 278
                      +  e+l +
       KOO23767.1 729 YPIEQLQA 736
                      ***99865 PP

>> Peptidase_M16  Insulinase (Peptidase family M16)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  120.7   0.0   1.1e-38   4.9e-35       1     147 [.      95     231 ..      95     233 .. 0.97
   2 !    7.2   0.0     0.001       4.5      80     123 ..     668     711 ..     655     739 .. 0.88
   3 ?   -2.1   0.0      0.74   3.3e+03      71     118 ..     821     871 ..     813     886 .. 0.71
   4 ?    0.5   0.0      0.12   5.4e+02      84     137 ..     892     947 ..     856     958 .. 0.78

  Alignments for each domain:
  == domain 1  score: 120.7 bits;  conditional E-value: 1.1e-38
                    EEEEEE-TSSSEEEEEEEES-SGGGSCTTTTTHHHHHHHHTTSBBSSSCH.HHHHHHHHHTTCEEEEEEESSEEEEEEEEEGGGHHHHHHHHHHHH CS
  Peptidase_M16   1 rvalesdppaktsavglvvdaGSryepkdlnGlAHllehmafkgTkkyps.nklaeeleklGgslnAttsrentvYyvevlskdlekaldvladvf 95 
                    rv+l sdp a + a+++ v +GS+++p+ l+GlAH++ehm+f+gTk +p+  ++++++++ Ggs nA+t  e t+Y+++v+ + l++al+++a +f
     KOO23767.1  95 RVLLASDPDAAKGAASMDVLVGSMSDPPSLPGLAHFCEHMLFLGTKAFPEeGGFEQYIANYGGSNNAYTASEDTNYFFDVQGSGLPGALERFAGFF 190
                    799********************************************************************************************* PP

                    HSBTTSHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHTTTSGGGSHSS- CS
  Peptidase_M16  96 kaplleesevererkvvekeveavdaepekvveenlhaaayrekalgrsllg 147
                    +apl+++ ++ r       ev+a+++e+     +nl+++++r ++l +  ++
     KOO23767.1 191 TAPLFTPAATGR-------EVSAIESEH----SKNLQSDFWRYEELFKLRAD 231
                    ************.......*********....**********9998876655 PP

  == domain 2  score: 7.2 bits;  conditional E-value: 0.001
                    EGGGHHHHHHHHHHHHHSBTTSHHHHHHHHHHHHHHHHHHCCHH CS
  Peptidase_M16  80 lskdlekaldvladvfkaplleesevererkvvekeveavdaep 123
                     s+ l+++l+  a  +k ++le+s +er+r+++++e++ +++++
     KOO23767.1 668 YSSRLPELLQYVAAQVKTAALEPSVFERTREALQQELANFEKRQ 711
                    567799*********************************99987 PP

  == domain 3  score: -2.1 bits;  conditional E-value: 0.74
                    SEEEEEEEEEGGG..HHHHHHHHHHHHHSBTTSHHHHHHHHH.HHHHHHHH CS
  Peptidase_M16  71 entvYyvevlskd..lekaldvladvfkaplleesevererk.vvekevea 118
                      t  + +v ++d     +l+vl++ + +pl  e  ++++   +v+  v++
     KOO23767.1 821 SATEVFCQVGKEDgdNWLCLAVLSQLIEQPLYGELRTKQQLGyIVQSSVSE 871
                    5566666666666333457999********999998888777666665554 PP

  == domain 4  score: 0.5 bits;  conditional E-value: 0.12
                    HHHHHHHHHHHHHSB..TTSHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHTT CS
  Peptidase_M16  84 lekaldvladvfkap..lleesevererkvvekeveavdaepekvveenlhaaayr 137
                    +e  +d + + f+ +  +l ese+++ r+++  +v +vd++  + + +  ++   r
     KOO23767.1 892 VERRIDAFLQSFRPTlaQLPESELKTVREALASQVTDVDQRLGQQASRLWTEIVTR 947
                    78888999999998877999*******************99966555555555555 PP

>> Peptidase_M16_C  Peptidase M16 inactive domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.9   0.0   1.9e-13   8.4e-10       2     181 ..     253     442 ..     252     443 .. 0.77
   2 !    4.4   0.0    0.0073        33      89     178 ..     618     695 ..     581     700 .. 0.78
   3 !   52.8   0.0   1.1e-17   4.9e-14       3     183 .]     742     922 ..     740     922 .. 0.85
   4 ?   -2.9   0.0       1.3   5.7e+03       2      17 ..     964     979 ..     964     980 .. 0.90

  Alignments for each domain:
  == domain 1  score: 38.9 bits;  conditional E-value: 1.9e-13
                      H-HHHHHHHHHHHSSGGGEEEEEEESS-HHHHHHHHHHHHTTSTHHSH..............CSGSCTSSSSSGGGSSEEEEEEEESSSSSEEE CS
  Peptidase_M16_C   2 ltredlkefykkfYrpenmvlaivGdvdheelvkliekyfgdlkaska..............ppakptgepltpatlkkppvvlkkldeeqahl 81 
                       tr+ l +f+++fY+++ m la+vG  + +el++l+ ++f  ++a                 p ++ ++       +   +  ++ ++  + ++
       KOO23767.1 253 ATRDALLSFHRRFYQADQMSLALVGPQPLDELQSLALRHFAAVPAARPalpgassaydglplPFNPARE-------PPRATLMVPVKEMRELKV 339
                      69******************************************8766888866544433322222222.......222233444445566778 PP

                      EEEEEEECTCTHTTHHHHHHHHHHHHSSTTSHHHHHHHTTTTSESEEEEEEEEES.SCEEEEEEEEEECT...THHHHHHHHHHHHHHHHHHTS CS
  Peptidase_M16_C  82 slafegpskendeddlalavlntlLgggmesrLytnlrekeglaysvsafndsyr.dsglfgisatadpe...nveevvevilkelrklkkegl 171
                      ++++++ +++   d  +  v + l  +   + L   l+ ++gla +  a +  ++    ++++s++++p    ++ +v  +++++lr l + g+
       KOO23767.1 340 AWCLPVTNLNEWLDAKPEGVWSLLVRNRGPGGLLPLLK-RKGLANGLDANVEEFSrAFVILSVSIDLTPLgltKWRDVSGLLFAYLRTLSEAGV 432
                      88888888855555555555555555556668998899.***********999998999999*******9************************ PP

                      -HHHHHHHHH CS
  Peptidase_M16_C 172 teeelerakn 181
                      ++  +e++++
       KOO23767.1 433 PPYVVEEYRT 442
                      **99999875 PP

  == domain 2  score: 4.4 bits;  conditional E-value: 0.0073
                      CTCTHTTHHHHHHHHHHHHSSTTSHHHHHHHTTTTSESEEEEEEEEESSCEEEEEEEEEECTTHHHHHHHHHHHHHHHHHHTS-HHHHHH CS
  Peptidase_M16_C  89 skendeddlalavlntlLgggmesrLytnlrekeglaysvsafndsyrdsglfgisatadpenveevvevilkelrklkkeglteeeler 178
                         + e ++  ++++  Lg++   + y++ +   gl+ +v+a+ +     g ++++a++++ ++ e+++ + ++++  + e   ++ +er
       KOO23767.1 618 YA-SAEASITAQLFQSTLGDTLQESTYQAGL--AGLGAGVGAEYN-----G-LFLTASGYSSRLPELLQYVAAQVKTAALE---PSVFER 695
                      44.7788899999999999999999999999..899999999966.....4.5689999*9*********99999988766...455555 PP

  == domain 3  score: 52.8 bits;  conditional E-value: 1.1e-17
                      -HHHHHHHHHHHSSGGGEEEEEEESS-HHHHHHHHHHHHTTSTHHSH...CSGSCTSSSSSGGGSSEEEEEEEESSSSSEEEEEEEEEECTCTH CS
  Peptidase_M16_C   3 tredlkefykkfYrpenmvlaivGdvdheelvkliekyfgdlkaska...ppakptgepltpatlkkppvvlkkldeeqahlslafegpskend 93 
                      + +d++ f  +    + ++++++G++d  +++++  k+   l+as+a   +  + ++++  p+  + +++v ++  e  ++++  f  ++ke+ 
       KOO23767.1 742 SIDDVRRFQGALLPESLLECFFAGNLDAADAEAITAKVTAALPASSAlapERIPRRRVRIVPVGRTLRQYVAPNAAE-ANSATEVFCQVGKEDG 834
                      6799999999999999*******************************997444455555555778889999999985.555555555555558* PP

                      TTHHHHHHHHHHHHSSTTSHHHHHHHTTTTSESEEEEE.EEEES.SCEEEEEEEEEECT.THHHHHHHHHHHHHHHHHHTS-HHHHHHHHHHH CS
  Peptidase_M16_C  94 eddlalavlntlLgggmesrLytnlrekeglaysvsaf.ndsyr.dsglfgisatadpe.nveevvevilkelrklkkeglteeeleraknql 183
                      ++ l+lavl++l+++     Ly +lr+k++l+y v+++ + s    s +f+++  ++p  +ve +++++l+ +r    + l+e+el+  +++l
       KOO23767.1 835 DNWLCLAVLSQLIEQP----LYGELRTKQQLGYIVQSSvSESEGvRSLVFSVQSAIQPPpEVERRIDAFLQSFRPTLAQ-LPESELKTVREAL 922
                      ****************....******************555555666669999999999********************.******9998876 PP

  == domain 4  score: -2.9 bits;  conditional E-value: 1.3
                      H-HHHHHHHHHHHSSG CS
  Peptidase_M16_C   2 ltredlkefykkfYrp 17 
                      +tre+l +f++++  p
       KOO23767.1 964 VTREQLLHFFDAHVAP 979
                      69**********9887 PP

>> Apolipoprotein  Apolipoprotein A1/A4/E domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.1         1   4.5e+03     157     179 ..     677     705 ..     664     710 .. 0.43
   2 ?   12.2   0.9   2.7e-05      0.12     129     181 ..     891     940 ..     805     945 .. 0.86

  Alignments for each domain:
  == domain 1  score: -2.7 bits;  conditional E-value: 1
                     HHHHHTS-T......TSHHHHHS--XXXX CS
  Apolipoprotein 157 eelreklee......qaeelrerleanle 179
                     + + +++++        e  re l++ l+
      KOO23767.1 677 QYVAAQVKTaalepsVFERTREALQQELA 705
                     44444444433333333333333333333 PP

  == domain 2  score: 12.2 bits;  conditional E-value: 2.7e-05
                     HHHHHHHHHHH-----..-----SSSHHHHHHHTS-TTSHHHHHS--XXXXXX CS
  Apolipoprotein 129 klaerleelkeslaphaeeveerlssrveelrekleeqaeelrerleanleel 181
                     ++++r++++ +s++p +++++   +s+++ +re+l+ q+ ++ +rl +++++l
      KOO23767.1 891 EVERRIDAFLQSFRPTLAQLP---ESELKTVREALASQVTDVDQRLGQQASRL 940
                     6899*****************...9***********************99988 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1026 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       432  (0.024095); expected 358.6 (0.02)
Passed bias filter:                      377  (0.0210274); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.68u 0.27s 00:00:00.95 Elapsed: 00:00:00.40
# Mc/sec: 7694.97
//
Query:       KOO23768.1  [L=112]
Description: hypothetical protein Ctob_000857 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (112 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       147  (0.00819901); expected 358.6 (0.02)
Passed bias filter:                      123  (0.00686039); expected 358.6 (0.02)
Passed Vit filter:                        11  (0.000613531); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.25s 00:00:00.62 Elapsed: 00:00:00.42
# Mc/sec: 792.65
//
Query:       KOO23769.1  [L=222]
Description: hypothetical protein Ctob_000856 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
  ------ inclusion threshold ------
       0.14   11.6   0.0        0.2   11.1   0.0    1.2  1  Creatininase  Creatinine amidohydrolase
       0.16   12.1   0.0       0.24   11.5   0.0    1.3  1  CBM_26        C-terminal carbohydrate-binding module


Domain annotation for each model (and alignments):
>> Creatininase  Creatinine amidohydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   2.2e-05       0.2      19      47 ..      70      98 ..      67     128 .. 0.85

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 2.2e-05
  Creatininase 19 ilPvGstEqHGphlplgtDtliaealaer 47
                  +l +G+ E HGp + +g D+ + e+l+ +
    KOO23769.1 70 LLKIGAWEAHGPRMAIGRDWQAWEELITK 98
                  5779****************999999887 PP

>> CBM_26  C-terminal carbohydrate-binding module
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   2.7e-05      0.24      45      79 ..      17      56 ..       9      81 .. 0.82

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 2.7e-05
                SSTT--EE...EEEEEETT..S-EEEEEEE--TT--STTE CS
      CBM_26 45 sdpsvkel...katiWyln..GrredlklekpetvdtdGr 79
                +d sv  +    +t+Wy +  Gr   l +e++  vdt+ r
  KOO23769.1 17 KDVSVSAIiqsSNTLWYADhrGRSPTLDIERSPHVDTHAR 56
                5666654322279****85449999************988 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (222 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       240  (0.0133861); expected 358.6 (0.02)
Passed bias filter:                      220  (0.0122706); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.40u 0.25s 00:00:00.65 Elapsed: 00:00:00.41
# Mc/sec: 1621.16
//
Query:       KOO23770.1  [L=117]
Description: hypothetical protein Ctob_000858 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.19   11.4   0.3       0.25   11.0   0.3    1.1  1  DUF1564    Protein of unknown function (DUF1564)
        6.9    7.3   6.5          5    7.8   4.7    1.7  2  OAD_gamma  Oxaloacetate decarboxylase, gamma chain


Domain annotation for each model (and alignments):
>> DUF1564  Protein of unknown function (DUF1564)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.3   2.8e-05      0.25      86     148 ..      47     107 ..      36     111 .. 0.82

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 2.8e-05
     DUF1564  86 vrvntkdWallgvlaaahgvSrCyLfnyL.LwledlgvgnsivktlnaGvptfhrsykyilkld 148
                 vrv t+ W+l+ ++  a+  S C L  +  L l  + v + +v++  +G   f  sy+++++l+
  KOO23770.1  47 VRVPTRRWMLIALILLALYTSMCILAVFTvLFL-VTAVTS-FVSATANGLLLFY-SYQIYMSLE 107
                 8***********************988872444.444666.7777788999999.999998875 PP

>> OAD_gamma  Oxaloacetate decarboxylase, gamma chain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.1      0.31   2.8e+03      16      26 ..      57      67 ..      55      69 .. 0.65
   2 ?    7.8   4.7   0.00056         5       5      33 ..      64      92 ..      61      95 .. 0.89

  Alignments for each domain:
  == domain 1  score: -1.0 bits;  conditional E-value: 0.31
   OAD_gamma 16 vvLilLslvis 26
                ++LilL l +s
  KOO23770.1 57 IALILLALYTS 67
                56777777655 PP

  == domain 2  score: 7.8 bits;  conditional E-value: 0.00056
   OAD_gamma  5 lltllGmgvVFvvLilLslvislfskiik 33
                l t ++++ VF+vL+l + v+s++s+ ++
  KOO23770.1 64 LYTSMCILAVFTVLFLVTAVTSFVSATAN 92
                56889******************998765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (117 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1139  (0.0635284); expected 358.6 (0.02)
Passed bias filter:                      359  (0.0200234); expected 358.6 (0.02)
Passed Vit filter:                        48  (0.00267723); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.41u 0.25s 00:00:00.65 Elapsed: 00:00:00.41
# Mc/sec: 849.52
//
Query:       KOO23771.1  [L=319]
Description: 50s ribosomal protein l2 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    8.5e-51  171.4   1.1    1.2e-50  170.9   1.1    1.2  1  Ribosomal_L2_C  Ribosomal Proteins L2, C-terminal domain
    3.9e-21   74.8   0.1    6.9e-21   74.0   0.1    1.4  1  Ribosomal_L2    Ribosomal Proteins L2, RNA binding domain
  ------ inclusion threshold ------
       0.17   12.0   0.0       0.32   11.1   0.0    1.4  1  DUF4384         Domain of unknown function (DUF4384)


Domain annotation for each model (and alignments):
>> Ribosomal_L2_C  Ribosomal Proteins L2, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  170.9   1.1   2.1e-54   1.2e-50       2     126 .]     157     281 ..     156     281 .. 0.98

  Alignments for each domain:
  == domain 1  score: 170.9 bits;  conditional E-value: 2.1e-54
                     SSS-EBSSSS-TTB-BBSE-SSTTS--SSS-SSSB-EEBB-B.SSEEEEEETTS-EEEEETTSBEBES-BS-TTCTT----STTHHHHTTBS--- CS
  Ribosomal_L2_C   2 vGnvlplknipeGtivhnielkpgkggklarsaGtyaqvvakegkkvtvklpSgevrkvssecrAtiGvvsngehkekklgkAgrkrwlgrrpkv 96 
                     +Gn++ l++ip Gt vhnie+ pgkgg+++rsaG+ a++++k++k++++klpS e+rk++  c+AtiGv+sn ++++++lgkAg++ w grrp+v
      KOO23771.1 157 PGNAMALGSIPDGTEVHNIEMLPGKGGEIVRSAGAAARIISKDDKYAILKLPSSEIRKMPIGCMATIGVLSNDQWRNRRLGKAGASWWVGRRPQV 251
                     7*****************************************9**************************************************** PP

                     -SSSS-TTTSSS--SSSS--SSSSTEETTC CS
  Ribosomal_L2_C  97 rGvamnpvdHphGGGeGktksrkapvspwg 126
                     rGvamnpvdHp+GGGeGk+++ + ++spwg
      KOO23771.1 252 RGVAMNPVDHPMGGGEGKSSGGRVSCSPWG 281
                     ******************9997799****8 PP

>> Ribosomal_L2  Ribosomal Proteins L2, RNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   74.0   0.1   1.2e-24   6.9e-21       1      76 [.      72     148 ..      72     149 .. 0.91

  Alignments for each domain:
  == domain 1  score: 74.0 bits;  conditional E-value: 1.2e-24
                   TB-TT--BSSTT----.----EE-B--S---SS--EEEEEEE--TT-SS-EEEEEETT.TEEEEEE--SS--SS-EE- CS
  Ribosomal_L2   1 GrnnsgritvrhrggG.hkkkyrlidfkrnkekvkgkVveieyDpgRsApiAlvkyed.gekryiiapeglkvGdtvv 76 
                   Grn++g+it+r r    h++kyr+idfkr+ ++ ++ V++ eyDp+Rs++iAl+kye+ ge +yi+ap+ l vG tv 
    KOO23771.1  72 GRNHTGQITIRGRCAPkHRRKYRIIDFKRSRTD-PAIVQRFEYDPNRSTFIALIKYESdGELSYILAPRDLAVGATVA 148
                   9***********98852566*******996555.59*********************99****************996 PP

>> DUF4384  Domain of unknown function (DUF4384)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   5.4e-05      0.32       9      53 ..     110     155 ..     109     187 .. 0.78

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 5.4e-05
     DUF4384   9 qfrvevnkdaYvylfdidasgevtllf.Pnrfdgdnfvkagetyti 53 
                 +f++ +n++ +++l+ ++++ge+++++ P +++  + v+ g + ++
  KOO23771.1 110 RFEYDPNRSTFIALIKYESDGELSYILaPRDLAVGATVASGDEASF 155
                 68999********************996677786666666666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (319 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       320  (0.0178482); expected 358.6 (0.02)
Passed bias filter:                      282  (0.0157287); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.46u 0.24s 00:00:00.70 Elapsed: 00:00:00.41
# Mc/sec: 2332.59
//
Query:       KOO23772.1  [L=746]
Description: calmodulin-like protein 12-like protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.5e-20   69.5   1.1    5.7e-06   25.8   0.0    4.4  4  EF-hand_6  EF-hand domain
    2.9e-19   67.1   3.8    9.6e-06   24.8   0.0    4.8  5  EF-hand_1  EF hand
    1.6e-17   62.1   4.1    2.2e-05   23.8   0.1    3.6  3  EF-hand_5  EF hand
    5.4e-15   55.6   0.2    0.00049   20.5   0.0    3.8  4  EF-hand_7  EF-hand domain pair
    3.1e-13   49.4   1.0    5.3e-08   32.6   0.1    3.4  3  EF-hand_8  EF-hand domain pair
  ------ inclusion threshold ------
       0.16   12.0   0.1        1.7    8.7   0.0    2.8  3  Barstar    Barstar (barnase inhibitor)


Domain annotation for each model (and alignments):
>> EF-hand_6  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.0       1.1   3.3e+03      13      27 ..     159     173 ..     147     175 .. 0.78
   2 !   17.0   0.1   1.4e-06     0.004       5      26 ..     557     578 ..     553     581 .. 0.91
   3 !   25.8   0.0   1.9e-09   5.7e-06       3      26 ..     620     643 ..     618     649 .. 0.91
   4 !   21.9   0.1   3.6e-08   0.00011       3      28 ..     659     684 ..     657     692 .. 0.90

  Alignments for each domain:
  == domain 1  score: -1.5 bits;  conditional E-value: 1.1
   EF-hand_6  13 gdGkidaeElrkalr 27 
                 g+G ++  E ++ +r
  KOO23772.1 159 GSGVVTVREAISYFR 173
                 89****999887776 PP

  == domain 2  score: 17.0 bits;  conditional E-value: 1.4e-06
   EF-hand_6   5 aFklfDkdgdGkidaeElrkal 26 
                 +F  +D +g+Gk+++eEl+ a+
  KOO23772.1 557 VFGSIDLNGNGKVTFEELKMAI 578
                 799***************9987 PP

  == domain 3  score: 25.8 bits;  conditional E-value: 1.9e-09
   EF-hand_6   3 reaFklfDkdgdGkidaeElrkal 26 
                  ++F+++D+dgdG++++eE+rka+
  KOO23772.1 620 LDLFRQWDVDGDGTVTREEFRKAM 643
                 689*******************98 PP

  == domain 4  score: 21.9 bits;  conditional E-value: 3.6e-08
   EF-hand_6   3 reaFklfDkdgdGkidaeElrkalrk 28 
                 + +F++fDkdg G+i++ El ++lr+
  KOO23772.1 659 NGLFNAFDKDGEGQISFRELHRMLRT 684
                 568*********************96 PP

>> EF-hand_1  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.0       2.6   7.8e+03      17      26 ..      33      42 ..      33      43 .. 0.88
   2 ?   -0.2   0.0      0.32   9.6e+02      12      28 ..     527     543 ..     526     544 .. 0.87
   3 !   18.2   0.2     4e-07    0.0012       4      26 ..     556     578 ..     553     580 .. 0.87
   4 !   24.8   0.0   3.2e-09   9.6e-06       3      26 ..     620     643 ..     618     645 .. 0.92
   5 !   20.9   0.1   5.7e-08   0.00017       5      28 ..     661     684 ..     657     685 .. 0.91

  Alignments for each domain:
  == domain 1  score: -3.1 bits;  conditional E-value: 2.6
                EEHHHHHHHH CS
   EF-hand_1 17 IdfeEfkell 26
                I++e+f++++
  KOO23772.1 33 ISKEQFVQIV 42
                89****9986 PP

  == domain 2  score: -0.2 bits;  conditional E-value: 0.32
                 TSSSEEEHHHHHHHHHH CS
   EF-hand_1  12 DgdGkIdfeEfkellkk 28 
                 D  G++++  f++++ +
  KOO23772.1 527 DEKGYVTLPKFRSVMWT 543
                 789**********9976 PP

  == domain 3  score: 18.2 bits;  conditional E-value: 4e-07
                 HHHHHHTTTSSSEEEHHHHHHHH CS
   EF-hand_1   4 eiFrefDkDgdGkIdfeEfkell 26 
                  +F  +D +g+Gk++feE+k ++
  KOO23772.1 556 GVFGSIDLNGNGKVTFEELKMAI 578
                 578899*************9875 PP

  == domain 4  score: 24.8 bits;  conditional E-value: 3.2e-09
                 HHHHHHHTTTSSSEEEHHHHHHHH CS
   EF-hand_1   3 keiFrefDkDgdGkIdfeEfkell 26 
                  ++Fr  D+DgdG++++eEf++++
  KOO23772.1 620 LDLFRQWDVDGDGTVTREEFRKAM 643
                 579*******************99 PP

  == domain 5  score: 20.9 bits;  conditional E-value: 5.7e-08
                 HHHHHTTTSSSEEEHHHHHHHHHH CS
   EF-hand_1   5 iFrefDkDgdGkIdfeEfkellkk 28 
                 +F+ fDkDg G+I+f E+ ++l++
  KOO23772.1 661 LFNAFDKDGEGQISFRELHRMLRT 684
                 7********************986 PP

>> EF-hand_5  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.2   0.1     2e-07   0.00061       4      22 ..     557     575 ..     554     578 .. 0.89
   2 !   23.8   0.1   7.2e-09   2.2e-05       3      23 ..     621     641 ..     619     644 .. 0.90
   3 !   18.9   0.1   2.5e-07   0.00076       3      24 ..     660     681 ..     658     682 .. 0.88

  Alignments for each domain:
  == domain 1  score: 19.2 bits;  conditional E-value: 2e-07
                 HHHHH-SS-SSCE-HHHHH CS
   EF-hand_5   4 tFqaiDlNgDGkIskeELk 22 
                 +F  iDlNg Gk+++eELk
  KOO23772.1 557 VFGSIDLNGNGKVTFEELK 575
                 7999**************8 PP

  == domain 2  score: 23.8 bits;  conditional E-value: 7.2e-09
                 HHHHHH-SS-SSCE-HHHHHH CS
   EF-hand_5   3 dtFqaiDlNgDGkIskeELkt 23 
                 d+F++ D++gDG++++eE+++
  KOO23772.1 621 DLFRQWDVDGDGTVTREEFRK 641
                 78*****************98 PP

  == domain 3  score: 18.9 bits;  conditional E-value: 2.5e-07
                 HHHHHH-SS-SSCE-HHHHHHH CS
   EF-hand_5   3 dtFqaiDlNgDGkIskeELktl 24 
                  +F+a+D++g G+Is+ EL ++
  KOO23772.1 660 GLFNAFDKDGEGQISFRELHRM 681
                 58*****************886 PP

>> EF-hand_7  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.9   0.0         6   1.8e+04      54      65 ..     156     167 ..     138     173 .. 0.53
   2 !   14.0   0.0   1.7e-05     0.051      42      67 ..     550     575 ..     517     578 .. 0.76
   3 !   20.5   0.0   1.6e-07   0.00049      45      70 ..     616     643 ..     586     644 .. 0.74
   4 !   16.3   0.0   3.2e-06    0.0097       4      30 ..     658     684 ..     650     725 .. 0.76

  Alignments for each domain:
  == domain 1  score: -3.9 bits;  conditional E-value: 6
   EF-hand_7  54 DtdkdGvisfdE 65 
                  ++++Gv++  E
  KOO23772.1 156 GHRGSGVVTVRE 167
                 345555555444 PP

  == domain 2  score: 14.0 bits;  conditional E-value: 1.7e-05
   EF-hand_7  42 sdeelellfkefDtdkdGvisfdEFl 67 
                 s e  + +f  +D++++G+++f+E++
  KOO23772.1 550 SIEDADGVFGSIDLNGNGKVTFEELK 575
                 4466899*****************85 PP

  == domain 3  score: 20.5 bits;  conditional E-value: 1.6e-07
   EF-hand_7  45 e..lellfkefDtdkdGvisfdEFlkly 70 
                 +  + +lf+ +D d+dG+++++EF+k++
  KOO23772.1 616 AarVLDLFRQWDVDGDGTVTREEFRKAM 643
                 323779********************98 PP

  == domain 4  score: 16.3 bits;  conditional E-value: 3.2e-06
   EF-hand_7   4 lkeaFkelDtdgdgyldkeellrllrk 30 
                 +   F+++D+dg g ++ +el+r+lr 
  KOO23772.1 658 INGLFNAFDKDGEGQISFRELHRMLRT 684
                 555677777777777777777777775 PP

>> EF-hand_8  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.1   0.0   2.1e-05     0.063       1      48 [.     528     574 ..     528     576 .. 0.90
   2 !   12.5   0.1   3.3e-05     0.098      30      52 ..     621     643 ..     618     645 .. 0.91
   3 !   32.6   0.1   1.8e-11   5.3e-08       2      52 ..     631     682 ..     630     684 .. 0.88

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 2.1e-05
   EF-hand_8   1 ekgkItreelrril.rilglkkglseeevdilfrefDtdgdGkisfeEF 48 
                 ekg++t  ++r+ + ++ ++k   s e++d +f  +D++g+Gk++feE 
  KOO23772.1 528 EKGYVTLPKFRSVMwTLGVIK--SSIEDADGVFGSIDLNGNGKVTFEEL 574
                 68999999******7775666..9***********************96 PP

  == domain 2  score: 12.5 bits;  conditional E-value: 3.3e-05
   EF-hand_8  30 ilfrefDtdgdGkisfeEFcvll 52 
                 +lfr  D dgdG+++ eEF   +
  KOO23772.1 621 DLFRQWDVDGDGTVTREEFRKAM 643
                 69*****************9877 PP

  == domain 3  score: 32.6 bits;  conditional E-value: 1.8e-11
   EF-hand_8   2 kgkItreelrrilrilglkk....glseeevdilfrefDtdgdGkisfeEFcvll 52 
                 +g +tree+r+++  lg ++    + s+e++  lf++fD dg G isf E + +l
  KOO23772.1 631 DGTVTREEFRKAM--LG-PElgfnDASPENINGLFNAFDKDGEGQISFRELHRML 682
                 899********77..54.3357788***************************998 PP

>> Barstar  Barstar (barnase inhibitor)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.7   0.0   0.00056       1.7      28      41 ..     341     358 ..     326     377 .. 0.75
   2 ?   -2.3   0.0       1.6   4.7e+03      52      72 ..     606     626 ..     603     632 .. 0.84
   3 ?   -2.2   0.0       1.4   4.2e+03       2      35 ..     628     662 ..     627     684 .. 0.76

  Alignments for each domain:
  == domain 1  score: 8.7 bits;  conditional E-value: 0.00056
     Barstar  28 GrNlDALdDcLtd....a 41 
                 G+NlDAL+D L++    a
  KOO23772.1 341 GCNLDALIDTLSElgaeA 358
                 99*********9987541 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 1.6
     Barstar  52 aalrkalpeafetllevleda 72 
                 ++lr +l+ +++ +l+++++ 
  KOO23772.1 606 QRLRDRLASQAARVLDLFRQW 626
                 789999999999999999976 PP

  == domain 3  score: -2.2 bits;  conditional E-value: 1.4
     Barstar   2 ldgakirdkadfldei.aealgfPdyfGrNlDALd 35 
                 +dg++ +++++f +++ + +lgf d   +N + L 
  KOO23772.1 628 VDGDGTVTREEFRKAMlGPELGFNDASPENINGLF 662
                 68888899999988752668888888888888876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (746 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       714  (0.0398237); expected 358.6 (0.02)
Passed bias filter:                      492  (0.0274416); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.64u 0.27s 00:00:00.91 Elapsed: 00:00:00.44
# Mc/sec: 5072.02
//
Query:       KOO23773.1  [L=270]
Description: hypothetical protein Ctob_000864 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
        0.3   12.1   3.2       0.65   11.0   0.2    2.6  3  KCNQ2_u3  Unstructured region on Potassium channel subunit al


Domain annotation for each model (and alignments):
>> KCNQ2_u3  Unstructured region on Potassium channel subunit alpha KvLQT2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.5   0.0      0.15   2.6e+03      18      36 ..      77      95 ..      61     118 .. 0.72
   2 ?   11.0   0.2   3.6e-05      0.65       2      40 ..     137     175 ..     136     193 .. 0.78
   3 ?   -0.7   0.1      0.17     3e+03      29      54 ..     221     246 ..     198     260 .. 0.46

  Alignments for each domain:
  == domain 1  score: -0.5 bits;  conditional E-value: 0.15
    KCNQ2_u3 18 keekitkivrssssmgqkn 36
                +  + +k++rsss++g  +
  KOO23773.1 77 EGRARHKVERSSSKAGLLS 95
                5556789999999988655 PP

  == domain 2  score: 11.0 bits;  conditional E-value: 3.6e-05
    KCNQ2_u3   2 PAPPYHsPedsreekekeekitkivrssssmgqknfsap 40 
                 P PP H+P+  r ++ +++ + +i+r s ++ ++    p
  KOO23773.1 137 PVPPMHAPVPRRSNVTRKDGVASITRGSDEADARRNGYP 175
                 99************************9766555444444 PP

  == domain 3  score: -0.7 bits;  conditional E-value: 0.17
    KCNQ2_u3  29 sssmgqknfsapsaasesqcrPstsw 54 
                 ++s+ ++  ++ + a ++q + +  w
  KOO23773.1 221 AASEDARRAASMADAARAQVQAARHW 246
                 22222222222223333344444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (270 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       819  (0.0456802); expected 358.6 (0.02)
Passed bias filter:                      310  (0.0172904); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.24s 00:00:00.67 Elapsed: 00:00:00.40
# Mc/sec: 2038.41
//
Query:       KOO23774.1  [L=356]
Description: kinesin-like protein at 3a [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    8.4e-54  182.7   0.0    7.1e-34  117.2   0.0    2.1  2  Kinesin      Kinesin motor domain
    3.6e-21   75.7   0.0    5.9e-21   75.0   0.0    1.3  1  Microtub_bd  Microtubule binding
  ------ inclusion threshold ------
      0.065   13.3   1.3       0.13   12.4   0.3    2.0  2  bZIP_2       Basic region leucine zipper
        0.2   12.0   1.3       0.76   10.1   0.6    2.4  2  TSC22        TSC-22/dip/bun family


Domain annotation for each model (and alignments):
>> Kinesin  Kinesin motor domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  117.2   0.0   1.6e-37   7.1e-34      29     180 ..      31     184 ..      11     186 .. 0.90
   2 !   65.5   0.0   8.5e-22   3.8e-18     273     333 .]     181     239 ..     176     239 .. 0.91

  Alignments for each domain:
  == domain 1  score: 117.2 bits;  conditional E-value: 1.6e-37
                 EEEEEEECTTSCEEEEESEEEETTS-HHHHHHHHHHHHHHHHHTTSEEEEEEEESTTSSHHHHHTBC..........TTTSBSHHHHHHHHHHHHHHHC CS
     Kinesin  29 kkskkenkeeeekkfkFdkvfdeeatqeevyeetakplvesvleGynatifaYGqtgsGKTyTmegk..........eeeeeGiipraleelFesikke 117
                 + +++++ + ++ +f+ d v d +a qeevye + ++ v +v++Gyn +i+aYGqtgsGKTyTm g           + + +G+ pra++++F s+++ 
  KOO23774.1  31 RFDQQRTVQVRNLEFSLDWVWDADAAQEEVYEILGRERVARVMHGYNLCIIAYGQTGSGKTYTMFGPeevirdwsgsDVTLHGLAPRAIADIFASLRSA 129
                 456778889999****************************************************************988899**************998 PP

                 TTTHEEEEEEEEEEEEEETTEEEETTSTTTTSTSSEBEEEECTTSCCEEETTS--EEESSHHH CS
     Kinesin 118 keekekefsvkvsylEiYneeiyDLLeskkskkkkklkiredskkgevyvkgltevevksaee 180
                  +   ++f v  sy+E+Yn+++ DLL  +     k l +re ++++ v+v+gl  + v+s +e
  KOO23774.1 130 PKA--SQFVVMASYVEVYNDQCNDLLGGR-----KGLVLRETAQRR-VVVEGLVREVVTSETE 184
                 866..99********************87.....5799******87.*******999998765 PP

  == domain 2  score: 65.5 bits;  conditional E-value: 8.5e-22
                 HHHHTCCTSTSCGGGSHHHHHTGGGHSSSSEEEEEEEE-TBGGGHHHHHHHHHHHHHHCTT CS
     Kinesin 273 aLaekkkskhipYRdSkLTrlLqdsLgGnsktlmivtvspssenleetlstlkfaerakei 333
                 + +e   ++h+pYRdSkLTrlLq+sLgGn+  +++vt+ ++s nl+et+ tl+fa rak +
  KOO23774.1 181 SETEG--AAHVPYRDSKLTRLLQESLGGNTASAVVVTLRTESANLDETIGTLRFAVRAKAV 239
                 44444..99*************************************************976 PP

>> Microtub_bd  Microtubule binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   75.0   0.0   1.3e-24   5.9e-21      23     149 .]       7     153 ..       3     153 .. 0.88

  Alignments for each domain:
  == domain 1  score: 75.0 bits;  conditional E-value: 1.3e-24
                  EEEEEEECCCS-T........EEEETTT.....TTTEEEE-SEEEECTTHCCCCCCCC.HHHHHHHHTT--EEEEEEES................... CS
  Microtub_bd  23 Rvfarvrpelesek.......akikfpe..eekkkkkefsFdrvfeseseqeevfeei.sqlvqsaldgynvcifaygqTGsGKtyTmeg........ 102
                   v+ar+rp+l+s++       +k +f++  + + ++ efs+d v ++++ qeev+e + +  v  +++gyn ci+aygqTGsGKtyTm g        
   KOO23774.1   7 GVYARLRPDLDSSAprddsiiVKKRFDQqrTVQVRNLEFSLDWVWDADAAQEEVYEILgRERVARVMHGYNLCIIAYGQTGSGKTYTMFGpeevirdw 104
                  59*********988888765533333335688999********************988356788888**********************999999988 PP

                  ........ST-HCHHHHHHHHHHCCTSCCCCEEEEEEEEEEESS-EEETT CS
  Microtub_bd 103 ...eeeeagmipraveeifetiselkekgwkyeielqfveiynekvqDlL 149
                     + + +g  pra+  if  +++   k  ++ + +++ve+yn++ +DlL
   KOO23774.1 105 sgsDVTLHGLAPRAIADIFASLRSA-PKASQFVVMASYVEVYNDQCNDLL 153
                  8766678999************999.89*********************8 PP

>> bZIP_2  Basic region leucine zipper
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.0       1.1   4.8e+03      46      49 ..     266     269 ..     253     284 .. 0.47
   2 ?   12.4   0.3   2.9e-05      0.13      30      52 ..     308     330 ..     307     331 .. 0.93

  Alignments for each domain:
  == domain 1  score: -2.3 bits;  conditional E-value: 1.1
                 HHHH CS
      bZIP_2  46 qkve 49 
                 ++ +
  KOO23774.1 266 EEAS 269
                 3322 PP

  == domain 2  score: 12.4 bits;  conditional E-value: 2.9e-05
                 HHHHHHHHHHHHHHHHHHHHHHH CS
      bZIP_2  30 leervkeLeeeNaqLrqkveqLe 52 
                 +++r+ eLe+eN +Lr+++++L+
  KOO23774.1 308 MAQRIAELEAENTTLRNRNRTLR 330
                 689****************9996 PP

>> TSC22  TSC-22/dip/bun family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.0       1.3   5.8e+03      18      34 ..     215     231 ..     212     235 .. 0.70
   2 ?   10.1   0.6   0.00017      0.76      21      43 ..     310     332 ..     308     346 .. 0.82

  Alignments for each domain:
  == domain 1  score: -2.3 bits;  conditional E-value: 1.3
       TSC22  18 vLkekIkeLeernsele 34 
                 +L+++ ++L e++ +l+
  KOO23774.1 215 TLRTESANLDETIGTLR 231
                 67888888877776664 PP

  == domain 2  score: 10.1 bits;  conditional E-value: 0.00017
       TSC22  21 ekIkeLeernseleeENslLkal 43 
                 ++I+eLe++n++l++ N++L+ +
  KOO23774.1 310 QRIAELEAENTTLRNRNRTLRVT 332
                 58999999999999999999965 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (356 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       489  (0.0272742); expected 358.6 (0.02)
Passed bias filter:                      404  (0.0225333); expected 358.6 (0.02)
Passed Vit filter:                        56  (0.00312343); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.52u 0.25s 00:00:00.77 Elapsed: 00:00:00.43
# Mc/sec: 2475.82
//
Query:       KOO23775.1  [L=199]
Description: ATP-dependent clp protease proteolytic subunit [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    3.8e-75  251.8   1.3    4.5e-75  251.5   1.3    1.0  1  CLP_protease  Clp protease


Domain annotation for each model (and alignments):
>> CLP_protease  Clp protease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  251.5   1.3   2.5e-79   4.5e-75       4     181 ..      18     195 ..      15     196 .. 0.98

  Alignments for each domain:
  == domain 1  score: 251.5 bits;  conditional E-value: 2.5e-79
                   SECHHHHHHHHTTTEEEEES-BSHHHHHHHHHHHHHHHHH-SSS-EEEEEEE--B-HHHHHHHHHHHHHSSS-EEEEEEEEEETHHHHHHHTS-TTG CS
  CLP_protease   4 eraydiysrllkeriiflgseiddevankiiaqLllLeaedpdkdillyinspGGsvtaglaIydtmqyikpdvsticlGlaaSmgslllaagekgk 100
                   + ++diy+rl++eriiflg+eidde+ n+iia +l+ ++ed++k+++lyinspGGsv agla+ydt+q+i ++v+t ++G+aaSm+s++l age+gk
    KOO23775.1  18 ADWVDIYNRLYRERIIFLGQEIDDEICNQIIAVMLFSDSEDQEKPMYLYINSPGGSVIAGLALYDTIQHIASPVITANIGMAASMASFILGAGERGK 114
                   579********************************************************************************************** PP

                   EEEETTEEEEES-TEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHTS-HHHHHHHHCSTEEEEHHHHHHHTSSSEE-SS CS
  CLP_protease 101 RfalpnarimihqPlggaqgqasdieieaeellkikerlneilakhtgqslekiekdldrdtflsaeeAveyGLideviek 181
                   R+alpn+r+mihqP+gg +gqa+di+ eae++lkik +l++++a+ tg+s+e+i kdldrd+++sa++A++yGLid+++++
    KOO23775.1 115 RVALPNSRVMIHQPMGGSEGQAEDIRVEAEQILKIKGTLVTMYAQMTGNSREQIMKDLDRDNYMSAQQALDYGLIDKIVTS 195
                   ******************************************************************************975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (199 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       607  (0.0338558); expected 358.6 (0.02)
Passed bias filter:                      519  (0.0289475); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.27s 00:00:00.71 Elapsed: 00:00:00.43
# Mc/sec: 1374.06
//
Query:       KOO23776.1  [L=72]
Description: hypothetical protein Ctob_000867 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    7.5e-06   26.0   7.4    8.5e-06   25.8   7.4    1.0  1  VMA21          VMA21-like domain
    0.00081   19.3   0.2    0.00081   19.3   0.2    1.0  1  PMP22_Claudin  PMP-22/EMP/MP20/Claudin family
  ------ inclusion threshold ------
      0.019   14.7   1.1      0.021   14.6   1.1    1.1  1  Oxidored_q3    NADH-ubiquinone/plastoquinone oxidoreductase c


Domain annotation for each model (and alignments):
>> VMA21  VMA21-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.8   7.4   1.4e-09   8.5e-06      11      64 .]       1      55 [.       1      55 [. 0.96

  Alignments for each domain:
  == domain 1  score: 25.8 bits;  conditional E-value: 1.4e-09
       VMA21 11 llmvtlPlasfftskhllfegvfglsn.ssatlysgvlAVivvnlvlasYiivAf 64
                ++m+ +P +++ + + ++++++f++++  ++++y+g++ +++v+ v++++ i Af
  KOO23776.1  1 MFMFGVPAIVMMFAYGVVLDQLFTFEKaGEKMVYAGIAGIASVQFVVIGFLIYAF 55
                78************************9678999********************98 PP

>> PMP22_Claudin  PMP-22/EMP/MP20/Claudin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.3   0.2   1.4e-07   0.00081      81     130 ..       8      58 ..       1      71 [. 0.80

  Alignments for each domain:
  == domain 1  score: 19.3 bits;  conditional E-value: 1.4e-07
                    HHHHHHHHHHHHHHHHHTGGGTTTSS.HHHHHHHHHHHHHHHHHHHHHHHH CS
  PMP22_Claudin  81 iilgilslivavlqlkclkkgerfkl.aGiiflvsgLcvlvgasiYtsria 130
                    +i+ +++  v++ ql++++k ++ ++ aGi  ++s  +v++g  iY+ +  
     KOO23776.1   8 AIVMMFAYGVVLDQLFTFEKAGEKMVyAGIAGIASVQFVVIGFLIYAFNEP 58 
                    4778899999********986666555*******************97654 PP

>> Oxidored_q3  NADH-ubiquinone/plastoquinone oxidoreductase chain 6
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.6   1.1   3.4e-06     0.021      46      96 ..       6      53 ..       1      71 [. 0.67

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 3.4e-06
                 IIIHHHHHHHHHHHSSTTS----TTCHHHHHHHHHHHHHHHHHHHTT--.. CS
  Oxidored_q3 46 vGAilvlflFvimllesaeeeepeslsrslalaalligllllallllllle 96
                 v Ai+++f++ ++l   ++  ++e++ ++++ a++++ + + ++++ +l +
   KOO23776.1  6 VPAIVMMFAYGVVL---DQLFTFEKAGEKMVYAGIAGIASVQFVVIGFLIY 53
                 569***********...7888999999888888766665555554443333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (72 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       511  (0.0285013); expected 358.6 (0.02)
Passed bias filter:                      338  (0.0188521); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.34u 0.27s 00:00:00.61 Elapsed: 00:00:00.41
# Mc/sec: 529.24
//
Query:       KOO23777.1  [L=712]
Description: hypothetical protein Ctob_000860, partial [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
  ------ inclusion threshold ------
        0.2   11.7   0.4       0.33   11.0   0.4    1.2  1  Duffy_binding  Duffy binding domain


Domain annotation for each model (and alignments):
>> Duffy_binding  Duffy binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.4   1.8e-05      0.33      27      82 ..     479     535 ..     458     539 .. 0.80

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 1.8e-05
  Duffy_binding  27 eskkskedLlkafieaAavEtfflwkkykken.enpqkklksgkipseflrqlaytf 82 
                    + ++ +++L+++ +  A+vE++++ +++++    ++   l++ +i+ e +r ++++ 
     KOO23777.1 479 TLEELRHNLVEEALDRARVEGESMLQRHEEVAaARAAAMLDHAEIEAEAVRLMKRSH 535
                    44667888*********************998334455569*************995 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (712 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       926  (0.0516482); expected 358.6 (0.02)
Passed bias filter:                      347  (0.0193541); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.61u 0.26s 00:00:00.87 Elapsed: 00:00:00.41
# Mc/sec: 5168.46
//
Query:       KOO23778.1  [L=462]
Description: glycerol-3-phosphate o-acyltransferase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    7.4e-09   35.3   0.0    1.8e-07   30.9   0.0    2.3  1  Acyltransferase  Acyltransferase
  ------ inclusion threshold ------
      0.034   14.0   0.2      0.076   12.9   0.2    1.6  1  COX8             Cytochrome oxidase c subunit VIII


Domain annotation for each model (and alignments):
>> Acyltransferase  Acyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.9   0.0     2e-11   1.8e-07      22     133 ..      85     298 ..      74     303 .. 0.89

  Alignments for each domain:
  == domain 1  score: 30.9 bits;  conditional E-value: 2e-11
  Acyltransferase  22 Hqsy.lDvlllwlllyksngprnvviiakkellsipllgflmrllgfifidR.......................................... 72 
                      H    lD+++   ++    g+++v  +a+++  +++++g ++rll+ i+++R                                          
       KOO23778.1  85 HANQfLDPFVVISAV----GRTDVCYLAAAKSMRLRFVGLMARLLDSIPVERaddvafqgrgtvwispedgmtvlgrgtdftqalkpgdaivve 174
                      666668999999989....3444555555555889*********************************************************** PP

  Acyltransferase  73 ..............................................................ksnaraagsl.eniselleegklvviFPEGtr 103
                                                                                     +  ++++++ + ++e+l++gk ++iFPEG+ 
       KOO23778.1 175 grdgplairqvvsdeelllkrpapplpasadeaesgvaesgvaaaavtaaapaeaggytpyrVNPHVDQSAMfDSVHEALNAGKAIGIFPEGGS 268
                      **************************************************************7777777766266666**************** PP

  Acyltransferase 104 sregellpfkkGlvrlaakakkgvpivPva 133
                          +llp k+G++ +a+ a +++p +P+ 
       KOO23778.1 269 HDRPGLLPLKAGVAIMALGALTKYPHMPLR 298
                      *****************9999888877765 PP

>> COX8  Cytochrome oxidase c subunit VIII
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.2   8.5e-06     0.076      21      37 ..      26      42 ..      21      44 .. 0.91

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 8.5e-06
                HHHHHHHHHHHHHHHTH CS
        COX8 21 vffvtfLlPaGWvLsHL 37
                ++fv+ Ll a+W+Ls++
  KOO23778.1 26 ALFVGSLLVAAWILSNI 42
                68*************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (462 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       448  (0.0249875); expected 358.6 (0.02)
Passed bias filter:                      374  (0.0208601); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.49u 0.26s 00:00:00.75 Elapsed: 00:00:00.41
# Mc/sec: 3389.96
//
Query:       KOO23779.1  [L=790]
Description: cyclic nucleotide-binding protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    4.8e-12   45.6   0.0      8e-12   44.9   0.0    1.4  1  Ion_trans     Ion transport protein
    1.7e-07   31.4   0.1    5.7e-07   29.8   0.0    1.8  2  C2            C2 domain
    0.00015   21.8   0.0    0.00028   20.9   0.0    1.4  1  cNMP_binding  Cyclic nucleotide-binding domain


Domain annotation for each model (and alignments):
>> Ion_trans  Ion transport protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.9   0.0   1.3e-15     8e-12       3     243 ..     216     522 ..     214     524 .. 0.74

  Alignments for each domain:
  == domain 1  score: 44.9 bits;  conditional E-value: 1.3e-15
                 HHHHHHHHHHHHHHHHHHCCCSSSS...................HHHHC..HHHHHHHHHHHHHHHHHHHHHHHHHTH..........HHHHHHCHSHH CS
   Ion_trans   3 vfelfilllillncvflaletyfpe...................delek..tileilelvftaiftlemllkilalgl..........likkrYlrdpw 70 
                  ++++  + il+  ++++le +f++                     ++     + + + +++ +f+++++l++++ ++          + +k Y++   
  KOO23779.1 216 RWNVLLAIGILYCGIAVPLEIAFEPdmvqamctnpkdpygpisfRGNCIsyLQWYWGNALVDLFFIIDIVLNFRTGFMreghlvaddwEVAKAYVHGS- 313
                 6999999999***************99999999999888888763333366778999******************8889999****9999999**997. PP

                 HHHHHHHHHHHHHHH.....HHHH.....................HHHHHHHHHHHHGGGGGGHHHCHSHHHHHHHHH.....HHHHHHHHHHHHHHHH CS
   Ion_trans  71 nilDflvvlpsllsl.....vlse.....................esllllsvlrlfrvlrllklisrleglrtlvta.....lirsvkdllnvlllll 138
                 +++D +  +p+ ++      +  +                      ++ +l+++r++++ +l+++ +  ++l++l         i +vk l +v++ ++
  KOO23779.1 314 FVMDAIGSFPINIVTmltnpD--NpygdaqiaemqqaqsggadaaRANRMLRLVRMAKLTKLFRMRRLAKSLEALEDLgldpnAITVVKLLSLVVFCCH 410
                 999988777777755355450..145555556666677788877844444444444444444443333344444322211222899************* PP

                 HHHHHHHHHH.HHHHTTSCCCC.....CC....SCCSTSSS...TTTSSSSSSHHHHHHHHHHHHTTSSHHHHHHHHHHHSHHHHHHHHHHHHHHHHHH CS
   Ion_trans 139 vvlfifalig.vqlfkgklrek.....ne....caktwenp...nngntnFdnfftallwlfrlmttegwgdilyatldekskvaliyfvifiilgsfl 224
                 ++++++ +++ +++ ++ l  +      +     +++w+ p   +n+ +   ++ +++ w   + t+    di + t  e+      ++ + ++++++l
  KOO23779.1 411 LLGCLWWMVAdIERSEEELGPEpgswlASpwhaGENNWQPPhwlRNDASVTMKYTYSFAWGAGMVTSLMPRDIEPLTVTES------LLTTACMFIGLL 503
                 ******99996777744444335555500555555667777333333333678****************************......************ PP

                 HHHHHHHHHHHHHHHHHHH CS
   Ion_trans 225 llNlliaviadnfqelter 243
                 l +++i   + +++ ++ +
  KOO23779.1 504 LNAYIISTLNQALAAMNAK 522
                 ******9999999888776 PP

>> C2  C2 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.8   0.0   9.6e-11   5.7e-07      26      90 ..      39     109 ..      18     122 .. 0.87
   2 ?   -2.8   0.0       1.3   7.6e+03      12      40 ..     651     678 ..     649     682 .. 0.77

  Alignments for each domain:
  == domain 1  score: 29.8 bits;  conditional E-value: 9.6e-11
                 EEEEEECEEEEEE-SCSSSSSSEE.EEEEEEEESC..HTTSEEEEEEEEECS....SSTEEEEEEEEEEGHH CS
          C2  26 vkvsldgkqkakTrviknslnPvW.nekftfevae..leeakLeveVfdndr....lskddfiGkveiplst 90 
                 vk+ l g+q +++r + ++lnPvW +e f f+     l ++ L+++V+d+d      skddf+G++ ++l++
  KOO23779.1  39 VKLAL-GQQQQRSRKKLKTLNPVWvDEVFAFSGVLgqLIADPLKLSVWDFDLyrlgGSKDDFLGRADVELAD 109
                 88899.99999999779*******77*****766667**************9998779**********9987 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 1.3
                 SSSSSSTTSSCEEEEEEEEECEEEEEE-S CS
          C2  12 nLpnkdkkgssdpyvkvsldgkqkakTrv 40 
                 nL n d +g  d y+++   + q ++T++
  KOO23779.1 651 NLTNTDNFGFNDYYASCVA-KMQPRCTQT 678
                 8999999999999988777.777777765 PP

>> cNMP_binding  Cyclic nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.9   0.0   4.7e-08   0.00028       5      88 ..     617     701 ..     614     702 .. 0.82

  Alignments for each domain:
  == domain 1  score: 20.9 bits;  conditional E-value: 4.7e-08
                   -TT-EEE-TTSB-SEEEEEEES-EEEEEEETTS.EEEEEEE-TTEEESHHHHH......HTS--SSEEEESSTEEEEEEEHHHHHHHHHH CS
  cNMP_binding   5 kagevifrqGdpadslyivlsGevrvyrlsedgkevvlavlgpGdlfGelall......tgeprtatvvAltdsellalprddflellqq 88 
                    +++ i  qG+p + ++++ +G v+   ++ dg +   + l++ d fG            + ++t t+ A+t + l  l+ ++++++l+ 
    KOO23779.1 617 IPDQLITMQGTPLTACFFINKGIVQT--STHDGMQ---TNLTNTDNFGFNDYYascvakMQPRCTQTAKAVTYCDLTTLDVETIDDALKH 701
                   5899**********************..9999966...46667777777555555567554559999****************9999875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (790 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       627  (0.0349713); expected 358.6 (0.02)
Passed bias filter:                      453  (0.0252663); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.65u 0.29s 00:00:00.94 Elapsed: 00:00:00.44
# Mc/sec: 5433.59
//
Query:       KOO23780.1  [L=205]
Description: niemann-pick c1 protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (205 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       664  (0.037035); expected 358.6 (0.02)
Passed bias filter:                      441  (0.024597); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.41u 0.24s 00:00:00.64 Elapsed: 00:00:00.39
# Mc/sec: 1571.10
//
Query:       KOO23781.1  [L=240]
Description: hypothetical protein Ctob_007548, partial [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
  ------ inclusion threshold ------
          5    7.1   6.6        7.5    6.6   6.6    1.3  1  Mito_fiss_reg  Mitochondrial fission regulator


Domain annotation for each model (and alignments):
>> Mito_fiss_reg  Mitochondrial fission regulator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6   6.6   0.00042       7.5     137     192 ..     183     237 ..     176     240 .] 0.53

  Alignments for each domain:
  == domain 1  score: 6.6 bits;  conditional E-value: 0.00042
  Mito_fiss_reg 137 AkIVaaqeasnssaslelsdtpdllepksssaspsl.epssslppppppppppippe 192
                    A++Vaa++  + +a+ ++++tp  + + ++   +++ +  +  pppppp pp++pp+
     KOO23781.1 183 ANVVAADTTISAVAFRQTNSTPPWTLSIRNLIVATTfA--EACPPPPPPAPPSPPPP 237
                    78888888888866666666666555555554443422..22233333333332222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (240 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       493  (0.0274974); expected 358.6 (0.02)
Passed bias filter:                      266  (0.0148363); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.29s 00:00:00.71 Elapsed: 00:00:00.43
# Mc/sec: 1662.72
//
Query:       KOO23782.1  [L=91]
Description: hypothetical protein Ctob_007549 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (91 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       283  (0.0157845); expected 358.6 (0.02)
Passed bias filter:                      226  (0.0126053); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.25s 00:00:00.59 Elapsed: 00:00:00.40
# Mc/sec: 685.41
//
Query:       KOO23783.1  [L=1479]
Description: isoform v [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
   1.2e-174  578.1  42.8    2.6e-51  174.2   1.0    4.1  4  Ion_trans    Ion transport protein
    1.5e-10   40.4  48.1    7.7e-05   21.5   6.3    7.4  7  PKD_channel  Polycystin cation channel
  ------ inclusion threshold ------
       0.65   10.2   2.2          3    8.1   0.0    3.4  3  HemY_N       HemY protein N-terminus


Domain annotation for each model (and alignments):
>> Ion_trans  Ion transport protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  147.4   0.6   6.8e-47     4e-43       3     244 ..      33     338 ..      31     339 .. 0.91
   2 !  126.6   9.3   1.5e-40   9.2e-37       2     239 ..     407     638 ..     406     641 .. 0.92
   3 !  174.2   1.0   4.4e-55   2.6e-51       4     244 ..     686    1007 ..     683    1008 .. 0.92
   4 !  146.3  10.4   1.4e-46   8.5e-43       2     240 ..    1060    1311 ..    1059    1313 .. 0.94

  Alignments for each domain:
  == domain 1  score: 147.4 bits;  conditional E-value: 6.8e-47
                 HHHHHHHHHHHHHHHHHHCCCSSSSHHHHC.HHHHHHHHHHHHHHHHHHHHHHHHHTH.HHHHHHCHSHHHHHHHHHHHHHHHHHHHHH..HHHHHHHH CS
   Ion_trans   3 vfelfilllillncvflaletyfpedelek.tileilelvftaiftlemllkilalgl.likkrYlrdpwnilDflvvlpsllslvlse..esllllsv 97 
                 + +l+++ +il ncv++al+ +    ++e   ++e+++ +f++++tle+l++++algl + ++ +l++p+ni+  ++vl+s+++l + +  e++l+ s+
  KOO23783.1  33 TVDLLVVGVILANCVLMALDVPTGV-SPEFgAFIEWANNFFLGFYTLELLVRVVALGLhCEPGGFLSNPFNIFEGSIVLISWIVLLAPSgqEQNLVRSI 130
                 678999*************666665.44447****************************9***********************99444446899***** PP

                 HHHHGGGGGGHHHCHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCC..................................... CS
   Ion_trans  98 lrlfrvlrllklisrleglrtlvtalirsvkdllnvlllllvvlfifaligvqlfkgklrek..................................... 159
                  r fr lr+l l+  ++g+ +lv a + ++++++nv  l++vv++i a+ gvq+f+g ++ +                                     
  KOO23783.1 131 TRSFRSLRVLLLLGNIPGMPALVDAALTAIPAVWNVSGLCVVVVIIAAVSGVQFFGGVYHFRcadeeiqryaeqhhialrrrgviehhgggligpshdd 229
                 **********************************************************99999*********************999999999999998 PP

                 ..................CC.......SCCSTSSSTTTSSSSSSHHHHHHHHHHHHTTSSHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
   Ion_trans 160 ..................ne.......caktwenpnngntnFdnfftallwlfrlmttegwgdilyatldekskvaliyfvifiilgsflllNlliavi 233
                                   ++       c++ ++np +  t+Fd+++t ++ l+++   +gw + +y ++ +  + a ++fv++ i g+fl+l l++avi
  KOO23783.1 230 ffwqkrfdstgimcfgdpEQscpehtfCYEFEHNP-DHSTSFDSVITGVVPLLQTFLLDGWAEEMYRMMEAYCWEAAVFFVVLAICGGFLVLQLFLAVI 327
                 88888887777777766611566678787777777.779************************************************************ PP

                 HHHHHHHHHHH CS
   Ion_trans 234 adnfqeltere 244
                 +d+f+ ++e +
  KOO23783.1 328 SDTFAAIEEAR 338
                 *****998865 PP

  == domain 2  score: 126.6 bits;  conditional E-value: 1.5e-40
                 HHHHHHHHHHHHHHHHHHHCCCSSSSHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHCHSHHHHHHHHHHHHHHHHHHHHH.........HH CS
   Ion_trans   2 svfelfilllillncvflaletyfpedelektileilelvftaiftlemllkilalgllikkrYlrdpwnilDflvvlpsllslvlse.........es 91 
                 + f+ + +ll+++n+v+la+ +++++ e +  +le +  +  ++f+ e+ lki++lg+   +rY+++ wn+lD + vl+s+ +l+l++         + 
  KOO23783.1 407 PAFDAVATLLVMVNVVLLAVPYHNEPIERT-RWLESASKTLSVLFMGEFGLKIVGLGC---RRYWQNKWNCLDGTLVLISIGELMLENvagetllspKF 501
                 6799999*************9999997777.9**************************...***********************666667778888899 PP

                 HHHHHHHHHHGGGGGGHHHCHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCCCCSCCSTSSSTTTSSSSSSHHHHHHHHHHHH CS
   Ion_trans  92 llllsvlrlfrvlrllklisrleglrtlvtalirsvkdllnvlllllvvlfifaligvqlfkgklreknecaktwenpnngntnFdnfftallwlfrlm 190
                  + l++lr++rv+r++++i++++++   v a++++v+++ n+l+l+ +v+fifa+ig+qlf              + + +++ +F+ f+ a l++f+ +
  KOO23783.1 502 TSTLRLLRVIRVMRAMRVIRQWPTMYRNVVAFVNAVPQVTNLLILMGCVVFIFAIIGMQLF-----------GLTQLSTKSHAHFEFFGVAALTVFE-L 588
                 9***********************9999999******************************...........234455678899*************.7 PP

                 TTSSHHHHHHHHHHHS.HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
   Ion_trans 191 ttegwgdilyatldek.skvaliyfvifiilgsflllNlliaviadnfqe 239
                 +  g  d+  +++ +     +++yf+ ++++g + l+Nl++a+   +f+e
  KOO23783.1 589 FATGIVDLAKQCYLAVgLTPTVLYFGPVLVIGYLGLMNLFVAILLQTFEE 638
                 7778************777899**************************97 PP

  == domain 3  score: 174.2 bits;  conditional E-value: 4.4e-55
                  HHHHHHHHHHHHHHHHHCCCSSSS....................HHHHC..HHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHCHSHHHHHHHHHH CS
   Ion_trans    4 felfilllillncvflaletyfpe....................delek..tileilelvftaiftlemllkilalgllikkrYlrdpwnilDflvv 78  
                  felfi++li +++++l l+++                       +   +  + le++++ ft ift+e++lk++a+g      Y++++wn++Df +v
  KOO23783.1  686 FELFITFLIAVSSICLVLDSPRGDpeyvcsdfapgsseydecakS---TlkHHLEAANVYFTLIFTFEAFLKVMAYGG----AYFTEIWNLVDFAIV 775 
                  9*****************777777999999*****9998876422...1469*************************9....*************** PP

                  HHHHHHHHHHHHHHHHHHHHHHHGGGGGGHHHCHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCC................ CS
   Ion_trans   79 lpsllslvlseesllllsvlrlfrvlrllklisrleglrtlvtalirsvkdllnvlllllvvlfifaligvqlfkgklrek................ 159 
                  + sllsl +    +++++ lr++rvlr+l+l+ r ++++ ++ +li++++++ nvl++++ +++ifa++g+qlf+g++  +                
  KOO23783.1  776 CSSLLSLLP---GFSVFQTLRVMRVLRPLRLLIRNPNMKDVIETLINTLPAVTNVLVFVMGLMSIFAIVGMQLFMGTYAACndpamttraqcladst 869 
                  *******99...79*********************************************************************************** PP

                  .......................................CC......SCCSTSSSTTTSSSSSSHHHHHHHHHHHHTTSSHHHHHHHHHHHS..... CS
   Ion_trans  160 .......................................ne......caktwenpnngntnFdnfftallwlfrlmttegwgdilyatldek..... 206 
                                                         ++       ++ w np  +  nFd+f++++l+lf  mt+++++++++  +d+      
  KOO23783.1  870 pplaplplpsssenglgyvhtvedhytehhrelrgggggGKmkvftgGRRIWLNP--DAGNFDSFSDSMLALFIAMTGDNMPTLMWLGMDAVgvdva 964 
                  *********99999999999998888888777776665511666677889*****..6789************************************ PP

                  .....HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
   Ion_trans  207 .....skvaliyfvifiilgsflllNlliaviadnfqeltere 244 
                        + + +yf+++ ++g+f+  Nl+++ i+d+f+ +++++
  KOO23783.1  965 pvrndWSSSAFYFMAWQVVGTFMATNLFVGAIVDSFSTQRQKT 1007
                  ***999999*******************************987 PP

  == domain 4  score: 146.3 bits;  conditional E-value: 1.4e-46
                  HHHHHHHHHHHHHHHHHHHCCCSSSSHHHHC.HHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHCHSHHHHHHHHHHHHHHHHH.....HHHH... CS
   Ion_trans    2 svfelfilllillncvflaletyfpedelek.tileilelvftaiftlemllkilalgllikkrYlrdpwnilDflvvlpsllsl.....vlse... 89  
                  + fe+ ++++i  n+++l++++y+ e+   + +++e+l ++f + ++le+l+ki+a+g+   + Y+++ + ++ f+ ++++ l+         e   
  KOO23783.1 1060 KHFEYTMYCVIAANTFVLCFDHYHIEEVAIQaHVFEALTVTFRVCYVLEFLIKIIAMGV---RQYFSSEFRMFEFVLLFVTGLEQvdavlS--Eksy 1151
                  569***********************888889***************************...*******************9988555440..1556 PP

                  ..HHHHHHHHHHHHGGGGGGHHH..CHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCCCCSCCSTSSSTTTSSSSSSHHHH CS
   Ion_trans   90 ..esllllsvlrlfrvlrllkli..srleglrtlvtalirsvkdllnvlllllvvlfifaligvqlfkgklreknecaktwenpnngntnFdnffta 182 
                        +l++lr++rvlr+++l+  +rl++ r l+++l+ +v++llnv  +l++v++i+a++g+qlf            +  ++ n+  nF++f++a
  KOO23783.1 1152 fvLPPMVLRLLRIMRVLRVIRLVgdRRLGRTRELMQTLMLAVPSLLNVTSVLFLVMSIYAVLGMQLF---------PFVKHGEALNDSANFESFGNA 1239
                  6667999****************99******************************************.........677889999************ PP

                  HHHHHHHHTTSSHHHHHHHHHHHS..............HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
   Ion_trans  183 llwlfrlmttegwgdilyatldek..............skvaliyfvifiilgsflllNlliaviadnfqel 240 
                  +l lf+++t+++w  ++ +    +              + +a+ +fv+f ++g+f++lNl++av+ + f++l
  KOO23783.1 1240 MLLLFQVLTGDDWSAVMRDAAVDRdhgcdpdavpsncgTPLAIPFFVSFTLVGAFIFLNLVVAVVLERFESL 1311
                  *******************999999*******************************************9986 PP

>> PKD_channel  Polycystin cation channel
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    3.4   0.2     0.004        24     388     425 ..     296     333 ..     262     334 .. 0.70
   2 !    3.6   0.0    0.0037        22     223     262 ..     448     488 ..     438     496 .. 0.89
   3 !    8.2   9.3   0.00015      0.87     305     425 ..     509     638 ..     497     638 .. 0.75
   4 !   19.5   2.2   5.4e-08   0.00032     215     275 ..     737     799 ..     724     831 .. 0.84
   5 ?    1.1   0.4      0.02   1.2e+02     307     361 ..     795     850 ..     782     855 .. 0.72
   6 ?   -0.5   0.1     0.065   3.9e+02     397     424 ..     974    1001 ..     925    1002 .. 0.71
   7 !   21.5   6.3   1.3e-08   7.7e-05     215     425 ..    1069    1310 ..    1059    1311 .. 0.71

  Alignments for each domain:
  == domain 1  score: 3.4 bits;  conditional E-value: 0.004
                  HHHH-TTHHHHHHHHHHHHHHHHHHHHHHHHHHT-XXX CS
  PKD_channel 388 lesgnrvLGpllllalvflvifillnlflaiindsyee 425
                  + ++  +   +++++l++   f++l+lfla+i d++++
   KOO23783.1 296 MMEAYCWEAAVFFVVLAICGGFLVLQLFLAVISDTFAA 333
                  445666667799999999999**************986 PP

  == domain 2  score: 3.6 bits;  conditional E-value: 0.0037
                  HHHHHHHH-------.-------HHHHHHHHHHHHHHHHHH CS
  PKD_channel 223 lyfvveeilkirker.asylrsvwnlldlaivvlsvvlivl 262
                  ++f+ e+ lki   + ++y +++wn+ld  +v++s+  ++l
   KOO23783.1 448 VLFMGEFGLKIVGLGcRRYWQNKWNCLDGTLVLISIGELML 488
                  6899999********9*****************99876665 PP

  == domain 3  score: 8.2 bits;  conditional E-value: 0.00015
                  HHHHHHGGGGG------------------------HHHHHHHHHHHHHHHHHHSS......SS-STTSSHHHHHHHHHHHHTT---HH...HHHHH-T CS
  PKD_channel 305 vflttlkllkvlrfnktlslltktlaralkdvlgfalvivilflayaqlgvllfG......tqasnfsnlvksiltlfrlilgdfqyt...elesgnr 393
                   ++ ++++++v+r  +t++    +  +a+++v  + +++  +++ +a++g+ lfG      + ++ f+ +  ++lt+f+l    +          ++ 
   KOO23783.1 509 RVIRVMRAMRVIRQWPTMYRNVVAFVNAVPQVTNLLILMGCVVFIFAIIGMQLFGltqlstKSHAHFEFFGVAALTVFELFATGIVDLakqCYLAVGL 606
                  46778888999999999999999999*************************99996444434567788888999999766544333221212224555 PP

                  THHHHHHHHHHHHHHHHHHHHHHHHHHT-XXX CS
  PKD_channel 394 vLGpllllalvflvifillnlflaiindsyee 425
                     +l++    ++    l+nlf+ai+ +++ee
   KOO23783.1 607 TPTVLYFGPVLVIGYLGLMNLFVAILLQTFEE 638
                  55677777777788889***********9986 PP

  == domain 4  score: 19.5 bits;  conditional E-value: 5.4e-08
                  HHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHH..HHHHHHHHHHHHHH CS
  PKD_channel 215 evvfvvfvlyfvveeilkirkerasylrsvwnlldlaivvlsvvliv..lailrevlakkllk 275
                  e++ v f l f++e +lk++  + +y++++wnl+d+aiv+ s+++++  ++++++  ++++l+
   KOO23783.1 737 EAANVYFTLIFTFEAFLKVMAYGGAYFTEIWNLVDFAIVCSSLLSLLpgFSVFQTLRVMRVLR 799
                  778899**********************************99987642277777777777665 PP

  == domain 5  score: 1.1 bits;  conditional E-value: 0.02
                  HHHHGGGGG------------------------HHHHHHHHHHHHHHHHHHS.SSS CS
  PKD_channel 307 lttlkllkvlrfnktlslltktlaralkdvlgfalvivilflayaqlgvllf.Gtq 361
                  + +l+ l++l  n++++ + +tl + l++v  + + ++ l+  +a++g+ lf Gt+
   KOO23783.1 795 MRVLRPLRLLIRNPNMKDVIETLINTLPAVTNVLVFVMGLMSIFAIVGMQLFmGTY 850
                  33455555566699****************99888777777777777664441555 PP

  == domain 6  score: -0.5 bits;  conditional E-value: 0.065
                   HHHHHHHHHHHHHHHHHHHHHHHHT-XX CS
  PKD_channel  397 pllllalvflvifillnlflaiindsye 424 
                     +++a +++  f++ nlf+ +i ds++
   KOO23783.1  974 AFYFMAWQVVGTFMATNLFVGAIVDSFS 1001
                   457888899999*************997 PP

  == domain 7  score: 21.5 bits;  conditional E-value: 1.3e-08
                   HHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHH.HHHHH.HHHHHHHH-SSS----HHHHHHHHHHHHHHHHHHHHH CS
  PKD_channel  215 evvfvvfvlyfvveeilkirkerasylrsvwnlldlaivvlsvvlivlailr.evlak.kllkkveaekeefldFrevaqldqllriilavlvflt 308 
                   +++   fvl f  + i ++  + a+ ++ + +  ++  v+ +++ i+ + +r ++  + +++++v+       + ++v + ++ +     vl +l 
   KOO23783.1 1069 VIAANTFVLCFDHYHIEEVAIQ-AHVFEALTVTFRVCYVLEFLIKIIAMGVRqYFSSEfRMFEFVLLFVTGLEQVDAVLSEKSYFVLPPMVLRLLR 1163
                   5555555555555555555555.5555555555555555555444444433303333324555555555555566666655555555556666889 PP

                   HHGGGGG-----.....-------------------HHHHHHHHHHHHHHHHHHS.....S...SS-STTSSHHHHHHHHHHHHTT---HH..... CS
  PKD_channel  309 tlkllkvlrfnk.....tlslltktlaralkdvlgfalvivilflayaqlgvllf.....G...tqasnfsnlvksiltlfrlilgdfqyt..... 386 
                   ++++l+v+r++      + + l +tl+ a++ +l ++ v+++++  ya+lg+ lf     G   + ++nf+ + +++l lf+++ gd +++     
   KOO23783.1 1164 IMRVLRVIRLVGdrrlgRTRELMQTLMLAVPSLLNVTSVLFLVMSIYAVLGMQLFpfvkhGealNDSANFESFGNAMLLLFQVLTGD-DWSavmrd 1258
                   99*******98622222467899**************************99988844444344567899*************99998.677799** PP

                   .............HHHHH-TTHHHHHHHHHHHHHHHHHHHHHHHHHHT-XXX CS
  PKD_channel  387 .............elesgnrvLGpllllalvflvifillnlflaiindsyee 425 
                                   +++  L + +++++ ++ +fi+lnl++a++ +++e+
   KOO23783.1 1259 aavdrdhgcdpdaVPSNCGTPLAIPFFVSFTLVGAFIFLNLVVAVVLERFES 1310
                   ***********8545789*******************************986 PP

>> HemY_N  HemY protein N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.1   0.0   0.00051         3      10      73 ..     300     361 ..     296     372 .. 0.81
   2 ?   -2.3   0.1      0.83     5e+03      18      48 ..     542     572 ..     539     576 .. 0.60
   3 ?   -2.8   0.2       1.2   7.4e+03      22      37 ..    1289    1304 ..    1281    1318 .. 0.46

  Alignments for each domain:
  == domain 1  score: 8.1 bits;  conditional E-value: 0.00051
      HemY_N  10 yrietslvvavlllvllfvllylllrllrlllrlparvrrwrrrrrerkarealseGlialaeG 73 
                 y  e  + ++vl++ ++f++l l+l++++ ++++ + +r+      e +a +a+ + l + +eG
  KOO23783.1 300 YCWEAAVFFVVLAICGGFLVLQLFLAVISDTFAAIEEARKA--LEAEGAASRATGDSLDDEEEG 361
                 566888999*************************9999987..556666777766666555555 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 0.83
      HemY_N  18 vavlllvllfvllylllrllrlllrlparvr 48 
                  +++l+ ++++++ ++   l +l +l+++++
  KOO23783.1 542 NLLILMGCVVFIFAIIGMQLFGLTQLSTKSH 572
                 4566666666666666666666666666555 PP

  == domain 3  score: -2.8 bits;  conditional E-value: 1.2
      HemY_N   22 llvllfvllylllrll 37  
                   lv++f+ l l+++++
  KOO23783.1 1289 TLVGAFIFLNLVVAVV 1304
                  3333333333333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1479 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       666  (0.0371465); expected 358.6 (0.02)
Passed bias filter:                      355  (0.0198003); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.87u 0.29s 00:00:01.15 Elapsed: 00:00:00.48
# Mc/sec: 9242.37
//
Query:       KOO23784.1  [L=319]
Description: hypothetical protein Ctob_007553 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (319 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       496  (0.0276647); expected 358.6 (0.02)
Passed bias filter:                      314  (0.0175135); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.46u 0.23s 00:00:00.69 Elapsed: 00:00:00.41
# Mc/sec: 2359.47
//
Query:       KOO23785.1  [L=2527]
Description: thiotemplate mechanism natural product synthetase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    6.6e-56  189.7   2.8    1.1e-55  189.0   0.0    2.5  2  ketoacyl-synt    Beta-ketoacyl synthase, N-terminal domain
    1.3e-35  121.9   5.1    5.1e-35  120.1   4.4    2.5  1  Ketoacyl-synt_C  Beta-ketoacyl synthase, C-terminal domain
    3.1e-31  109.1   0.0    6.5e-31  108.0   0.0    1.5  1  Acyl_transf_1    Acyl transferase domain
    1.9e-28   99.2   0.0    4.8e-28   97.9   0.0    1.7  1  AMP-binding      AMP-binding enzyme
    2.4e-26   92.8   0.0    9.3e-26   90.8   0.0    2.1  2  KR               KR domain
    1.9e-21   76.2   0.5    5.3e-12   45.9   0.1    2.7  2  PP-binding       Phosphopantetheine attachment site
    1.2e-12   48.5   2.0    5.3e-09   36.5   0.2    2.9  3  Thioesterase     Thioesterase domain
    2.8e-08   34.2   0.0    7.7e-08   32.8   0.0    1.7  1  KAsynt_C_assoc   Ketoacyl-synthetase C-terminal extension
    0.00039   19.9   2.0    0.00039   19.9   0.4    1.7  2  Thiolase_N       Thiolase, N-terminal domain
      0.006   16.1   0.0       0.01   15.3   0.0    1.3  1  Epimerase        NAD dependent epimerase/dehydratase family
  ------ inclusion threshold ------
      0.014   14.8   0.0      0.037   13.5   0.0    1.6  1  adh_short        short chain dehydrogenase
      0.038   15.0   0.1       0.26   12.3   0.1    2.6  1  AMP-binding_C    AMP-binding enzyme C-terminal domain
      0.054   12.7   1.0       0.88    8.8   0.1    2.5  2  Hydrolase_4      Serine aminopeptidase, S33
      0.083   12.5   0.2       0.66    9.6   0.0    2.4  3  Abhydrolase_1    alpha/beta hydrolase fold
      0.096   12.1   0.0       0.14   11.5   0.0    1.2  1  GDP_Man_Dehyd    GDP-mannose 4,6 dehydratase
        5.8    6.7  11.1      0.046   13.6   0.7    2.7  3  Abhydrolase_3    alpha/beta hydrolase fold


Domain annotation for each model (and alignments):
>> ketoacyl-synt  Beta-ketoacyl synthase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  189.0   0.0   9.5e-59   1.1e-55       5     253 .]     636     885 ..     633     885 .. 0.89
   2 ?   -1.0   0.9      0.95   1.1e+03      95     165 ..     922     990 ..     912    1001 .. 0.63

  Alignments for each domain:
  == domain 1  score: 189.0 bits;  conditional E-value: 9.5e-59
                    EEEEEEEEBTTBSSHHHHHHHHHTT---EE..ES-TTSSCGTTSBTSSTTEEE-BSS.EEE..S.TTEGGTTSTHHHHHHHCTS-HHHHHHHHHHH CS
  ketoacyl-synt   5 aivGmgarfPggndveefwelLlegrdais..elpadrwdadklydpparaagkiktklggfld.vddfdpeffgispreaeamdpqqrllleaaw 97 
                    a +G +++fPg+++vee+w++L+egr+a +  ++p  +  a+++  p+ r++ +   + ++++  ++ fd+ f+gisp ea+ mdpq+r +l++aw
     KOO23785.1 636 ALIGHAGLFPGADTVEELWQMLCEGRNALRlwTAP--ELHAKGVA-PDVRLHPDFV-PAAYLVRgAQFFDAGFWGISPIEARIMDPQHRKFLQVAW 727
                    789***************************65555..57777774.4444444433.357788899****************************** PP

                    HHHHHHTS-HHTCTTGGEEEEEEESSTHH....HHHHHHHHHTTGGGSCTTHHHHHSTTHHHHHHHHHHT--SSEEEEESGGGHHHHHHHHHHHHH CS
  ketoacyl-synt  98 ealedagltpeeldgsrvgvfiGvgagdy....aalaaldedgsevkaspkavgavlanviagrisyalglrGpsvtvdtACsSslvavhaavqsl 189
                     aledag+ p++    +++vf+ +g+  y     + + l+++ ++ +++   vg+  + +ia+r+syal+l+Gps+++ +ACsS+l av++a+ sl
     KOO23785.1 728 AALEDAGYAPRAGTPAKTAVFASSGMDGYlvhhLKGKPLKDPLDPGSIFLAEVGS-EKDYIATRVSYALDLMGPSLAINSACSSALSAVAQACASL 822
                    **********9999999**********9988663334555566578888878888.9*************************************** PP

                    HTTS-SEEEEEEEE---SHHHHHHHHHTTBB-TTSGGGTTBTTB-SB-BB-EEEEEEEEECHHH CS
  ketoacyl-synt 190 rsgeadvalaGGvellltpeavagfsaagllspdgrckafdpkadGfvlGEGvGavvLkrleda 253
                    +s+++d+a+aGG++ l+ p++ ++f++  ++s dg++++fd++a G+v+G+ vGav+Lkrl +a
     KOO23785.1 823 VSRQSDMAIAGGSS-LTFPGKGYLFEQGLVSSIDGKVRPFDAQAHGTVFGDSVGAVILKRLHEA 885
                    **************.7779999***************************************987 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 0.95
                    HHHHHHHHHTS-HHTCTTGG...EEEEEEESSTHHHHHHHHHHHTTGGGSCTTHHHHHSTTHHHHHHHHHHT-- CS
  ketoacyl-synt  95 aawealedagltpeeldgsr...vgvfiGvgagdyaalaaldedgsevkaspkavgavlanviagrisyalglr 165
                    a+  ale ag+  +e+   +   +g ++G g++      al+e+     a  k vg+ +   i g+i +a  + 
     KOO23785.1 922 AMVAALEMAGIASNEVTYVEchaTGTLVGDGIELR----ALTEAYA-ATATAKLVGHCAIGSIKGNIGHANAAA 990
                    67789********9996665556999999999944....3333321.223333444445555555555554444 PP

>> Ketoacyl-synt_C  Beta-ketoacyl synthase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  120.1   4.4   4.5e-38   5.1e-35       1     117 [.     893    1013 ..     893    1014 .. 0.98

  Alignments for each domain:
  == domain 1  score: 120.1 bits;  conditional E-value: 4.5e-38
                       SEEEEEEEEEE--.STSSSTSTTHHHHHHHHHHHHHHHT--GGGEEEEE-SS-SSHHHHHHHHHHHHHHHGGGGG...SCTSEEE-THHHH- CS
  Ketoacyl-synt_C    1 yavikgsavnsdg.ahnsltapngeaqaraiekalaeagvdpedvdyveahgtgtplgDpiElealkkvfgekar...kqplavgSvKsniG 88  
                       +avi+g++v++dg +++++ ap  ++qa+a+ +al++ag++ ++v+yve+h+tgt +gD iEl+al+++++++a+     ++a+gS+K niG
       KOO23785.1  893 LAVIRGCGVTNDGaRKAGYAAPGVAGQAAAMVAALEMAGIASNEVTYVECHATGTLVGDGIELRALTEAYAATATaklVGHCAIGSIKGNIG 984 
                       69**********************************************************************999999679*********** PP

                       B-GGGHHHHHHHHHHHHHHHTEE--BTT- CS
  Ketoacyl-synt_C   89 HleaAaGvaelikvvlalkhgvipptlnl 117 
                       H+ aAaG+++lik++l+l +++++pt+++
       KOO23785.1  985 HANAAAGITGLIKTALCLSRRTLVPTAHF 1013
                       ****************************8 PP

>> Acyl_transf_1  Acyl transferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  108.0   0.0   5.8e-34   6.5e-31       2     270 ..    1206    1485 ..    1205    1499 .. 0.90

  Alignments for each domain:
  == domain 1  score: 108.0 bits;  conditional E-value: 5.8e-34
                     EEE--TT---TTTTCCHHHC-HHHHHHHHHHHHHCCHHHT--HH.HHHHS--T.......TGGGSHHHHHHHHHHHHHHHHHHHHHTT-TTSEE CS
  Acyl_transf_1    2 fvfsGqGsQwaGMGmeLlktskafaaviaradeafksqygfsvl.dvlrnnpe.......glldaiqfvqpaLaavqialaellkskGvrpaav 87  
                      +f+GqGsQ    G  L++ +++++  ++r+  a+ +  gf +  ++  ++++       g ++  +++qpa+++ ++al  +l   G++p a+
     KOO23785.1 1206 LIFPGQGSQCPRLGQGLYEGEPIYRRHVDRMCSALSPLLGFDLRaELFPSAEQeadpqylGRFNTPKVTQPAIFVTEVALGYTLIDLGLKPVAM 1299
                     59*****************************************725555666699*************************************** PP

                     EE-TTHHHHHHHHCCSSSHHHHHHHHHHHHHHHHHHTS-EECCEECS.HHHHHHH.....TT.EEEEEEECCCCECCEEHHHHHHHHHHHHHCC CS
  Acyl_transf_1   88 vGHSlGElAaavvagalsseeallavvlrsrlmmqlagpgdmaavelaeeeeklr...cqddvvgavansprrvvisgsqealrelvervskeg 178 
                     +GHS+GE Aaa  ag   + +al  ++ r  l    a++g m+a++ +e +  ++    + ++  av n+ +r v++g+ +a+++  + ++++g
     KOO23785.1 1300 AGHSIGEFAAATLAGVFAEGDALELIAARAIL-SAGAPEGKMLALNADEATALAAcaaEEGKLWIAVRNGVGRQVLAGEVAAVDRAAAALGAKG 1392
                     *********************99988887655.55689******999444433331236779******************************** PP

                     .CCEEECCCEECTTCCCCCCCCHHHHHHHHCCCHHCHHTTBEHCCCHHH.HHHCHHHHHHHHHHHCHCCHCCHHTTSSSECC-CCEECSSSSC CS
  Acyl_transf_1  179 vgalvenvnvavhspqvdaiadalasaladiaprkpkvakisstsldes.serelsaeywvanlrspvrfaeavlsaaetiplvfveispHsl 270 
                     +  +   vn a h p +++++ +l ++la + +r+p v+     +   + +++  +a yw+a + s+vr a+ + ++a  +p+++ve+   s 
     KOO23785.1 1393 FTCRALPVNRAYHTPLMAEAQRVLGEKLAGMKLRPPSVPLCCNGTGTWMtEATATDASYWAAHVASCVRWADNMDALATRAPAAVVEVGSGSS 1485
                     ***************************************9887776666488999********************************976655 PP

>> AMP-binding  AMP-binding enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   97.9   0.0   4.3e-31   4.8e-28      89     423 .]       4     399 ..       1     399 [. 0.80

  Alignments for each domain:
  == domain 1  score: 97.9 bits;  conditional E-value: 4.3e-31
                  HHHHHTESEEEETCTCCCHHHHHHHHS..CC-EECEEEEESCCS-HCCHCCCHCCCCSCTTS-TSCCCS-BTTSEEEEEEE--SSSS-EEEEEEH.HH CS
  AMP-binding  89 iledseakvliatvdselleklleaaa..kleavklvivldadellkeeelkeeeeseekaekpeeeeelkpddlayiiYTSGTTGkPKGVmlsh.rn 183
                  +l d+++ + i  ++++ lekl +a a  +++a++ + +l+ de ++ + l ++  +++         +++p d  +i +TSGT GkPK   + + + 
   KOO23785.1   4 LLGDVRPVAAI--TEQRFLEKLSSALAfvAPDATSPTPLLQMDEHADWRALVATVAASAPP--RSAWTRAQPYDHGIITFTSGTSGKPKCLTVPTiAF 97 
                  56777888888..666666666555541133445555555555555555555544333332..335568999*********************99666 PP

                  HHHHHHHHH.HHHC...SCCTT...T-EE.EESS-TTSCHHHHHHHHHHHHTT-EEEE-TTCGCCHHHHHHHHHHHHT-SEEEEEHHHHHHHHH.CCC CS
  AMP-binding 184 lvanvaslk.letr...fklke...ddvv.lsilplahifglilelllallsGatvvllpkdaaldpklllelieklkvtviagvPrvlealle.sga 272
                  +v+ va ++ l+ r       +   +d v    +    ++   +e + +l+ Gat  ++p d   d ++l++++++++ t + ++P++l  ++e + +
   KOO23785.1  98 AVSCVARHErLPYRghpY---SgeaGDGVpAGEVEAMNVMF-NWEAMRPLCFGATALVIPDDVIKDTTRLVAFLAQHGTTRLLTTPSLLATIIEtAAE 191
                  677777766855554332...13457777355577777776.48****************99889999************************884433 PP

                  HHC..HHHHC...CGTT-SEEEEESS-EBHHHHHHHHHHHTC.EEEEEEEEGGGSSEC..EECHCTTTCTSTTS-BEE-TTEEEEEE-TTTSCBEETT CS
  AMP-binding 273 lka..akkak...dlsslrlvllggeplspellrffralfge.evlegYGlTEttgvv..tvlpleedkkklgsvGkplpgvevkivDeetgepvpdg 362
                    a      +    ls++++ +l+ge ++++l r++   +++ ++++ Y   E + v+    l      +k   +G++++gv+++++ + t+ep+p+g
   KOO23785.1 192 GGAsaG---NlsaALSKIHMWMLCGEVVPAALPRRVALAVPHlTLVNDYSTWEGSDVTlgL-LSGAPTAAKCAPIGTVIAGVRCAVLHPTTLEPMPKG 285
                  332331...12226777888889*****************99*9**********9999542.333444445566************************ PP

                  SEEEEEEEETTS-SEBTT-HHHHHHHEEE...................................................T.CC.EEEEEEEEEEETT CS
  AMP-binding 363 eeGellvrgpgvmkgYlkkpeataeafds...................................................e.gr.wlrTGDlgrlded 407
                   +Gel+  +p +   Y + p++tae++ +                                                   + +   +rTGDl+rl +d
   KOO23785.1 286 FVGELWAASPMLYTAYVGAPALTAEKLQPmppamrslsgidadeicwhlatahaqataevaasgriervlpaaptsagapPlDPlAYRTGDLARLLPD 383
                  ***************************978899**********************************************8455569************ PP

                  SEEEEEEECCCEEEET CS
  AMP-binding 408 GyleivgRkkdliklr 423
                   ++ i+gR+  +ik+r
   KOO23785.1 384 DSFMILGRIGSTIKIR 399
                  **************96 PP

>> KR  KR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.6   0.0       7.8   8.7e+03       6      26 ..    1101    1121 ..    1101    1129 .. 0.84
   2 !   90.8   0.0   8.3e-29   9.3e-26       1     178 [.    2108    2283 ..    2108    2285 .. 0.81

  Alignments for each domain:
  == domain 1  score: -3.6 bits;  conditional E-value: 7.8
                  ETTTSHHHHHHHHHHHHHHS- CS
          KR    6 tGGlGgLGlelarwlaekgar 26  
                  +G lG L+  la++la+++a+
  KOO23785.1 1101 AGSLGRLAERLATFLAADAAA 1121
                  599************998864 PP

  == domain 2  score: 90.8 bits;  conditional E-value: 8.3e-29
                  SEEEEETTTSHHHHHHHHHHHHHH...S-EEEEE-SS..--HHHHHHHHHHHHTT-EEEE----TT-HHHHHHHHHHHHHHSS---EEEE------- CS
          KR    1 gtylitGGlGgLGlelarwlaekg...arhlvllsRsaaadedskaliaelealgaevevvaaDvsdkdavealleeikaeeppikGvihaAgvlrd 94  
                  gtylitGG+Gg+G +++ wl+++     ++ vllsR+            ++e  +  v++ +aD+s++++++a+ e+++   +++ G++h Agvl+d
  KOO23785.1 2108 GTYLITGGTGGVGAAVVAWLLNEQrvpPANPVLLSRR------------RIEPPQKGVTCTQADISSAASLRAC-EALQ-ALQSVDGIFHLAGVLDD 2190
                  8********************97633457999*****............3444555899**********99865.5555.567************** PP

                  --TTT--HHHHHHHHTTTTHHHHHHHHHTTT..S--SEEEEEEEHHHHH--TT-HHHHHHHHHHHHHHHHHHHHHHT........EEEEEE--B CS
          KR   95 klleemtaedleqvlapKvkGawnLhelled..esldffvlfSSiagllgsagqanYaaaNaflDalaeyrrsqglp........avsinwglw 178 
                  +l+++m++ +l+++++pK +G+  L el+++   +  +++  SS ++llg agq+nY aaN  lD++a+     + +        ++++n+g+w
  KOO23785.1 2191 GLIANMSEGRLHAAVQPK-AGLLELLELCAErkWRPRWLLNASSTSSLLGYAGQSNYCAANGLLDQMATFGLPDAVQraldvpplVLTLNFGPW 2283
                  ******************.5899999999883445689*****************************986433333333344456666666666 PP

>> PP-binding  Phosphopantetheine attachment site
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.9   0.1   4.8e-15   5.3e-12       6      67 .]     540     606 ..     535     606 .. 0.96
   2 !   27.9   0.0   1.9e-09   2.2e-06      20      65 ..    2475    2521 ..    2460    2523 .. 0.87

  Alignments for each domain:
  == domain 1  score: 45.9 bits;  conditional E-value: 4.8e-15
  PP-binding   6 lvaevlgvpleeidpdtdlfdlGlDSllavellaaleeef.....gveiplsdlfehptlaelaayl 67 
                 ++ae l +++ ++dpd+++fdlG++Slla +l+aal+ ++     g ++++ dlf+ p+l++la +l
  KOO23785.1 540 IWAEMLSLEPGAFDPDDSFFDLGGHSLLASKLVAALNGRLadllgGQKVSVMDLFNSPSLRSLATFL 606
                 9****************************************999999****************9876 PP

  == domain 2  score: 27.9 bits;  conditional E-value: 1.9e-09
  PP-binding   20 pdtdlfdlGlDSllavellaaleeefgveiplsdlfe.hptlaelaa 65  
                  p+ +l +lGlDSl++v+l + ++++f++++p++ + +  +tl+el+ 
  KOO23785.1 2475 PSLSLAELGLDSLDLVQLRNGFQKAFKLQVPMAYFTNaQQTLEELVG 2521
                  67789******************************655******986 PP

>> Thioesterase  Thioesterase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.6   0.0       8.7   9.8e+03      66      76 ..    1295    1305 ..    1294    1311 .. 0.89
   2 !   10.1   0.0   0.00058      0.65       5      39 ..    1638    1671 ..    1636    1681 .. 0.91
   3 !   36.5   0.2   4.7e-12   5.3e-09      49     215 ..    1704    1867 ..    1686    1881 .. 0.74

  Alignments for each domain:
  == domain 1  score: -3.6 bits;  conditional E-value: 8.7
                    SSEEEEEETHH CS
  Thioesterase   66 gPyalfGhSlG 76  
                    +P+a++GhS G
    KOO23785.1 1295 KPVAMAGHSIG 1305
                    699******99 PP

  == domain 2  score: 10.1 bits;  conditional E-value: 0.00058
                    EE--TTCCSGGGHHHHHHCTTCEEEEEEECSTTST CS
  Thioesterase    5 lfppagGsasvfrslasklsdpvvevlavqlpgre 39  
                    ++ +agGs+++f+ la++ ++ ++ev++v+ pg++
    KOO23785.1 1638 CLAYAGGSIAAFSELARAAPE-WMEVIGVEMPGKG 1671
                    8999*****************.9**********97 PP

  == domain 3  score: 36.5 bits;  conditional E-value: 4.7e-12
                    HHHHHHHHHHHHHH-SSSSEEEEEETHHHHHHHHHHHHHHHCT-SEEEEEEESCCCCCCHHCHHCCCHTTHHTHHHHHCCTTHHHCCTTTHCCHH CS
  Thioesterase   49 eelaaeyaealrqiqpegPyalfGhSlGgllAfevArqLesqGlavkslflidssapseteaqeasrraedeefveeltdlggtepeelledeel 143 
                    +++ +++a+ l +      ++l+G+S+Gg+lA e+A +L ++G +++ l + +  ap +  a ++   + +    +e++             e l
    KOO23785.1 1704 AAMMERLADRLATDSAGTALVLVGWSMGGMLAAELALALTARGCPPQMLHVAGRMAPGSFIAAGDDVDKYLL-ASDEMKATDA-------WKEWL 1790
                    578889999998888888***************************************885555554444444.4555555553.......35557 PP

                    HHHHHHHHHHHHHHHTCCS......-TTSCSE...HHCEEEEEEGSS-CTCCCCCCCHCHCHCTCESCEEEEEESSHCCHH CS
  Thioesterase  144 lsellpalradyraleqys......lrpeaaq...klratlfngsddklkdldtlelaerweqktsgevsvhvlegdhfyl 215 
                    l++ll  lrad+ra ++++      + +        l+  l++   ++ +++     ++ w+  tsg++  h l+g+h  l
    KOO23785.1 1791 LPTLLADLRADARAEQRARvlwvakSAA---SgapPLQCMLQVCAGTEDAAFPPSAVQA-WRPFTSGAFESHLLSGGHDVL 1867
                    8889999999999999999887544333...3455455555555555555555335677.******************655 PP

>> KAsynt_C_assoc  Ketoacyl-synthetase C-terminal extension
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.8   0.0   6.8e-11   7.7e-08      25      87 ..    1046    1117 ..    1035    1125 .. 0.81

  Alignments for each domain:
  == domain 1  score: 32.8 bits;  conditional E-value: 6.8e-11
  KAsynt_C_assoc   25 gi..vgvNsfGfGGsnvHviLksnkkekrkeesk.......eeslprLlvlsgrteeaveallekleehlld 87  
                      g   +g +sfG+GGsnvH++L++++   ++++++         +  +++++s++++ ++ +l+e+l++ l+ 
      KOO23785.1 1046 GSrlAGLSSFGIGGSNVHMVLEEPPPLPAAPNADephaiapCVRATHVITISAKSAGSLGRLAERLATFLAA 1117
                      44569********************666666666567887778999*******************9987554 PP

>> Thiolase_N  Thiolase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.9   0.4   3.5e-07   0.00039      70     111 ..     795     834 ..     776     837 .. 0.84
   2 ?   -3.7   0.0       5.6   6.2e+03      28      50 ..     920     942 ..     919     949 .. 0.88

  Alignments for each domain:
  == domain 1  score: 19.9 bits;  conditional E-value: 3.5e-07
                 TTS-TTSEEEEEEHGGGHHHHHHHHHHHHHHTTSHSEEEEEE CS
  Thiolase_N  70 agipeevpavtvnkvcsSglkavalaaqsiaageadvvvagG 111
                 +++    p+ ++n +csS+l+ava+a+ s+ + ++d+++agG
  KOO23785.1 795 LDL--MGPSLAINSACSSALSAVAQACASLVSRQSDMAIAGG 834
                 444..66899*******************************9 PP

  == domain 2  score: -3.7 bits;  conditional E-value: 5.6
                 HHHHHHHHHHHTS-GGGCCEEEE CS
  Thiolase_N  28 aealkallekagvdpeevdeviv 50 
                 a+a+ a+le ag++++ev++v +
  KOO23785.1 920 AAAMVAALEMAGIASNEVTYVEC 942
                 68999*************99866 PP

>> Epimerase  NAD dependent epimerase/dehydratase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.0   9.1e-06      0.01       2     116 ..    2111    2234 ..    2110    2245 .. 0.73

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 9.1e-06
                  EEETTTSHHHHHHHHHHHHCT....SEEEEEES-STTTTCHHCHHCEEEE--TT-HH...HHHHHHHHHT-SEEEE--S.-..--HHHHHHSHHHHH CS
   Epimerase    2 lVtGatGfiGsalvkallekg....yevigldrlssasntarledlelveldltdrs...alerlfkeeqpdavihlAa.v..ggvaassedpadfi 88  
                  l+tG+tG +G+a+v  ll+++     + + l+r++ + +   ++ ++ +++d+  ++   a+e+l + + +d ++hlA+    g +a+ se +   +
  KOO23785.1 2111 LITGGTGGVGAAVVAWLLNEQrvppANPVLLSRRRIEPP---QKGVTCTQADISSAAslrACEALQALQSVDGIFHLAGvLddGLIANMSEGRLHAA 2204
                  8******************99888766555566533333...2344999*****9995544444555559*******99433344566666677777 PP

                  HHHTHHHHHHHHHHHHHTCT..EEEEEEEG CS
   Epimerase   89 eknlqgtlnlleaarkagvk..rllflsSs 116 
                   +  +g l+lle + +++ +   ll++sS+
  KOO23785.1 2205 VQPKAGLLELLELCAERKWRprWLLNASST 2234
                  778889999999999885555478888885 PP

>> adh_short  short chain dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.0   3.3e-05     0.037       4     156 ..    2111    2253 ..    2109    2264 .. 0.81

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 3.3e-05
                  EEESTTSHHHHHHHHHHHHTT-EEEEEESCHHHHHHHHHHHHHTTSEEEEEE-TTTSHHHHHHHHHHHHHHHSSESEEEE---SS--SSGGGCSHHH CS
   adh_short    4 lvtGassGIGraiakelakeGakvvvvdrseekleevakelkeegakalaiqvDvtdreevealvekavkklgkldvLvnNAGitgsgpfselseee 100 
                  l+tG+++G+G a++  l++e+        ++  l +   e  ++   +++ q+D++++++++a   +a + l+++d + + AG+  +g ++++se +
  KOO23785.1 2111 LITGGTGGVGAAVVAWLLNEQRVP---PANPVLLSRRRIEPPQK--GVTCTQADISSAASLRAC--EALQALQSVDGIFHLAGVLDDGLIANMSEGR 2200
                  8*****************996433...33555555555565654..49********99999986..7889**************8888888888888 PP

                  HHHHHHHHTHHHHHHHHHHHHHHHHCTTEEEEEEEEGGGTSB-TTBHHHHHHHHHH CS
   adh_short  101 wervievNltgvflltravlpamlkqssGrIvnvsSvagkvpvagvaaYsAsKaav 156 
                    + ++    g+++l +++++   k +     n sS+ ++ ++ag++ Y+A+ + +
  KOO23785.1 2201 LHAAVQPK-AGLLELLELCAER--KWRPRWLLNASSTSSLLGYAGQSNYCAANGLL 2253
                  88888764.5888888888877..6677789********************96655 PP

>> AMP-binding_C  AMP-binding enzyme C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.1   0.00023      0.26       2      62 ..     408     478 ..     407     485 .. 0.79

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 0.00023
                    HHHHHHSSTTEEEEEEE-----TTS..---EEEEEE---..---.......HHHHHHHHHHHHT-TTTS-SE CS
  AMP-binding_C   2 vEsalvshpaVaeaaVvGvpdevkG..ealvafVvlkdg..sea.......leeeLkahvrkelgpyavpkk 62 
                    +E++l++ p+V  +aVv   dev+    alva   +++   + +         + +++ ++kel+++  p++
     KOO23785.1 408 LEATLAAYPGVGRVAVVPLLDEVTNqpTALVAHLLPDASaaE-SaardekaWLNSVRDMAKKELAAHELPSY 478
                    69********************88877889999999533331.13455667888999999999999988875 PP

>> Hydrolase_4  Serine aminopeptidase, S33
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.6   0.1      0.12   1.4e+02      76     115 ..    1295    1340 ..    1290    1386 .. 0.75
   2 ?    8.8   0.1   0.00079      0.88      65     139 ..    1710    1796 ..    1705    1868 .. 0.61

  Alignments for each domain:
  == domain 1  score: 1.6 bits;  conditional E-value: 0.12
  Hydrolase_4   76 lplfllGhSmGGliallyl.....lrypd..kva.glilsaPalkika 115 
                   +p+ + GhS G + a++++         +   +a ++ilsa a + k 
   KOO23785.1 1295 KPVAMAGHSIGEFAAATLAgvfaeG--DAleLIAaRAILSAGAPEGKM 1340
                   699*************999776332..324445558999988876664 PP

  == domain 2  score: 8.8 bits;  conditional E-value: 0.00079
  Hydrolase_4   65 fvekvkeehpelplfllGhSmGGliallyl.....lrypd......kvaglilsaPalkikakl...k.appllklllkllgkllpklqv 139 
                   + +++++++ ++ l+l+G SmGG++a++++                +vag +  +++++   ++     a+  +k++  +  +llp+l  
   KOO23785.1 1710 LADRLATDSAGTALVLVGWSMGGMLAAELAlaltaR---GcppqmlHVAGRMAPGSFIAAGDDVdkyLlASDEMKATDAWKEWLLPTLLA 1796
                   66888999999****************999643221...123344444555544444444444444423444455555555555555555 PP

>> Abhydrolase_1  alpha/beta hydrolase fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.0       3.9   4.4e+03      70      94 ..    1292    1316 ..    1288    1320 .. 0.86
   2 ?    9.6   0.0   0.00059      0.66      73      92 ..    1721    1740 ..    1681    1763 .. 0.84
   3 ?   -1.2   0.0       1.1   1.2e+03     216     252 ..    1830    1866 ..    1821    1867 .. 0.92

  Alignments for each domain:
  == domain 1  score: -3.0 bits;  conditional E-value: 3.9
                     CTTSSEEEEEETHHHHHHHHHHHHH CS
  Abhydrolase_1   70 lgddkltlvGhSmGGmialayaaey 94  
                     lg++++++ GhS G + a+++a  +
     KOO23785.1 1292 LGLKPVAMAGHSIGEFAAATLAGVF 1316
                     899***********88888888765 PP

  == domain 2  score: 9.6 bits;  conditional E-value: 0.00059
                     SSEEEEEETHHHHHHHHHHH CS
  Abhydrolase_1   73 dkltlvGhSmGGmialayaa 92  
                       l+lvG+SmGGm+a+++a+
     KOO23785.1 1721 TALVLVGWSMGGMLAAELAL 1740
                     4578*************996 PP

  == domain 3  score: -1.2 bits;  conditional E-value: 1.1
                     EEEETTCSSSCHHHHHHHHHCHTSEEEEEEETCSSSH CS
  Abhydrolase_1  216 visgtsDplvppkaledlaqllpkkrlvvisdagHla 252 
                     v +gt+D ++pp+a   ++  ++++++ ++  +gH++
     KOO23785.1 1830 VCAGTEDAAFPPSAVQAWRPFTSGAFESHLLSGGHDV 1866
                     5689*******************************97 PP

>> GDP_Man_Dehyd  GDP-mannose 4,6 dehydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   0.00013      0.14       1     138 [.    2111    2243 ..    2111    2250 .. 0.73

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.00013
                     EEETTTSHHHHHHHHHHHHCT-CCEEEEEEESS-TTHHHHHCTTT...TTGCCEEEEE--TT-HHHHH..HHHHHH.T-SEEEE--S---HHHH CS
  GDP_Man_Dehyd    1 LiTGiaGfiGsylaelLlekgyevhgivrrsssfntgriehlakdpkeeleenlklhkgDltDsssle..rllaev.qpdevynLAAqshVdvs 91  
                     LiTG++G +G+ ++ +Ll+++ +v     +  +++ +rie  +        + ++  ++D++ ++sl+  ++l+    +d +++LA+    +  
     KOO23785.1 2111 LITGGTGGVGAAVVAWLLNEQ-RVPP--ANPVLLSRRRIEPPQ--------KGVTCTQADISSAASLRacEALQALqSVDGIFHLAGVLDDGLI 2193
                     9*****************984.4543..456667778887633........46899*******9998622344444279********9765555 PP

                     TTSHHHHHHHHT...HHHHHHHHHHHHCT..TTSEEEEEEEGGGG-S-SS CS
  GDP_Man_Dehyd   92 fekPeytaevnv...lGtlrLLeairalglekkvrfyqaStsEvYGkvqe 138 
                      +++e  + + v    G l+LLe++ + + +++  +  +Sts + G + +
     KOO23785.1 2194 ANMSEGRLHAAVqpkAGLLELLELCAERKWRPRWLLNASSTSSLLGYAGQ 2243
                     55555444444422389999999998888888999999999999997765 PP

>> Abhydrolase_3  alpha/beta hydrolase fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.3       1.5   1.7e+03      74      96 ..     868     890 ..     849     926 .. 0.80
   2 ?   -3.7   0.3       7.7   8.7e+03      72     133 ..    1296    1363 ..    1291    1414 .. 0.53
   3 ?   13.6   0.7   4.1e-05     0.046      69     168 ..    1719    1823 ..    1698    1838 .. 0.59

  Alignments for each domain:
  == domain 1  score: -1.3 bits;  conditional E-value: 1.5
                    EEEEETHHHHHHHHHHHHHHHTT CS
  Abhydrolase_3  74 vlaGdSaGGnlaaavalrardeg 96 
                    +++GdS G+ +   +  +++d++
     KOO23785.1 868 TVFGDSVGAVILKRLHEAIADDD 890
                    79*********999887777664 PP

  == domain 2  score: -3.7 bits;  conditional E-value: 7.7
                     EEEEEEETHHHHHHHHHHHHHHHTT.---EEEEEEESE....-SST.SSTTSHHHHHCHHT.TTSSSSC CS
  Abhydrolase_3   72 rivlaGdSaGGnlaaavalrardeg.epkvagqvliyP....vtdl.ertesesikkaeel.adgpllt 133 
                      +++aG S G   aa +a  +++ +    +a+ ++++     +++l  + ++++  +a+ + ++g+l+ 
     KOO23785.1 1296 PVAMAGHSIGEFAAATLAGVFAEGDaLELIAARAILSAgapeGKMLaLNADEATA-LAACAaEEGKLWI 1363
                     6889999998655555554444433134477777777755553323212222222.2222225555554 PP

  == domain 3  score: 13.6 bits;  conditional E-value: 4.1e-05
                     TTCEEEEEEETHHHHHHHHHHHHHHHTT---..EEEEEEESE-SSTSSTTSHHHHHCHHTTTSSSSCHHHHHHHHHHHS.S..GGGGGSTTTSG CS
  Abhydrolase_3   69 dpsrivlaGdSaGGnlaaavalrardegepk..vagqvliyPvtdlertesesikkaeeladgplltraaldlfwrlyl.p..eadrddplasp 157 
                       + +vl+G S GG laa +al++ ++g p+  +     + P+       +++ +k   ++d+   t a+ ++++   l +   + r++ +a +
     KOO23785.1 1719 AGTALVLVGWSMGGMLAAELALALTARGCPPqmLHVAGRMAPGSFI--AAGDDVDKYLLASDEMKATDAWKEWLLPTLLaDlrADARAEQRARV 1810
                     45679**********************7443445555555665422..2233332222224444456666666665555235333344556666 PP

                     GGC.S-.SST--- CS
  Abhydrolase_3  158 lla.ed.lsglpp 168 
                     l+  ++  sg+pp
     KOO23785.1 1811 LWVaKSaASGAPP 1823
                     6553323777777 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (2527 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       472  (0.0263261); expected 358.6 (0.02)
Passed bias filter:                      331  (0.0184617); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                        17  (0.000948185); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              16  [number of targets reported over threshold]
# CPU time: 1.17u 0.32s 00:00:01.49 Elapsed: 00:00:00.51
# Mc/sec: 15028.38
//
Query:       KOO23786.1  [L=544]
Description: glycosyl hydrolase family 1 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
     3e-151  503.9   0.0   4.1e-151  503.5   0.0    1.2  1  Glyco_hydro_1  Glycosyl hydrolase family 1


Domain annotation for each model (and alignments):
>> Glyco_hydro_1  Glycosyl hydrolase family 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  503.5   0.0  2.3e-155  4.1e-151       4     451 ..      26     518 ..      23     520 .. 0.94

  Alignments for each domain:
  == domain 1  score: 503.5 bits;  conditional E-value: 2.3e-155
                    GS-TT-EEEEE--HHHHH--TTSTT---BHHHHHHHHGGGSTTS---SSTT-HHHHHHHHHHHHHHTT-SEEEEE--HHHHSTTS.TT---HHHHH CS
  Glyco_hydro_1   4 tfpedFlwgaataayqiEGawnedGkgesiwDtftetpgkvlegsngdvacdsYhrykeDvallkelgvkayrfSisWpRilPkG.egeinekGla 98 
                     fpe+F+wgaataa+qiEGa ++dGkg+siwD f++ +gk+  g+ gdvacd+Yh+ ++Dva++ke+g+ ayrfS++W+R++P+G  ++ n +G+a
     KOO23786.1  26 AFPEGFTWGAATAAFQIEGAHDADGKGPSIWDDFSHAKGKTYRGHHGDVACDHYHKAEADVAMMKEMGLPAYRFSLAWARLFPDGtPASENAAGVA 121
                    6************************************************************************************9999******* PP

                    HHHHHHHHHHHTT-EEEEEEESS--BHHHHHH-GGG-SHHHHHHHHHHHHHHHHHTTT..--EEEEEE-HHHHHHHHHTSS-STT-..S-TTTHHH CS
  Glyco_hydro_1  99 yYerLidelleagieplvTlyHwdlPqaLqdeGgwenrsiidafkeyaevvfkrfgdk..vklwlTfnEpnvvallgyltgefaPg..kkdleaay 190
                    +Y++L+  l+eagi+ ++TlyHwdlP aLq +Ggw + +    f+ ya+ +f+ f     v++w+TfnEp+++  lgy++g++aPg  +++++++y
     KOO23786.1 122 FYRKLLTLLKEAGIRAMITLYHWDLPSALQAKGGWLSPEAPGWFEAYAARCFELFDTDgfVDMWFTFNEPWCMCALGYGSGVHAPGrnTDPGREPY 217
                    ******************************************************975444**************************99999***** PP

                    HHHHHHHHHHHHHHHHHHHHTTT-EEEEEEEEEEEEESSSSHHHHHHHHHHHHHHTHHHHHHHHH.SS--HHHHHHHGGG..S----HHHHHHHTT CS
  Glyco_hydro_1 191 eaaHnlllaharavklykevaqkgkigivlnlslaeplseseedkeaaeraleflngwfldpvvk.GdYpeemkellrergalpeiteedkellkg 285
                     aaH+ llahar ++lyk ++++  igivln++++ep+s++++d +a++r+l f++gwf++p++  GdYp+em+e + er  lp++++e+++l++g
     KOO23786.1 218 IAAHHTLLAHARCYRLYKAKGYTRPIGIVLNSEWREPASSNPRDLQACARELAFMLGWFAEPIFGsGDYPAEMRERCAER--LPTFDDEQTALVRG 311
                    ****************************************************************99*************9..************** PP

                    --SEEEEEEEEEEEEEE--...-STT---SSGGGGG-..................................SBSS-B-SSSS-B-HHHHHHHHHHH CS
  Glyco_hydro_1 286 kadflglnyYtsrlvknkeseeaslskteekkleeev..................................dpslpktdigwiiepeglrkllell 347
                    + df+g+n Y+ r++++  + +  +   +  ++ + +                                  ++++ +t++ w ++p++l ++l  +
     KOO23786.1 312 SSDFFGFNWYSARITAEPRTYQVLTALPSLIRMGMGEpygltgwlranaraawnqegpgnyfadihampsfKTTWSTTHMTWPVVPWALARILCHI 407
                    *************99988855555544444444444456********************************************************* PP

                    HHTS--.--EEEEE----EE-BSSSHHH--H.......HHHHHHHHHHHHHHHHHHTT--EEEEEEE-SB----GGGTTSEE--SEEEETTTTTEE CS
  Glyco_hydro_1 348 kkeYqk.lpiyiteNGlgakdeieegkveDd.......kRidYlkehlnevkkaiedgvdlkgYvawsllDnfewaegyskrfGlvyvdrnetleR 435
                    +++Y+    iyiteNG+++  e   ++  D+       +R+ Y+++hl++v++ai +g+d++gY++wsl+Dnfewa gy krfG v+vd ++tl R
     KOO23786.1 408 TEKYKPkGGIYITENGVAVAGEDSLSAALDTrpgkpgaRRVAYVRSHLVAVQRAIAKGADVRGYFLWSLMDNFEWAFGYAKRFGAVHVD-YHTLVR 502
                    ****97578********9988766555445422223337**************************************************.9***** PP

                    EE-HHHHHHHHHHH-S CS
  Glyco_hydro_1 436 tpkkSakwykeviekn 451
                    tpk  + +yk+v ++n
     KOO23786.1 503 TPKPVVAFYKSVCSSN 518
                    ************9988 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (544 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       257  (0.0143343); expected 358.6 (0.02)
Passed bias filter:                      234  (0.0130515); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.50u 0.27s 00:00:00.77 Elapsed: 00:00:00.43
# Mc/sec: 3770.34
//
Query:       KOO23787.1  [L=207]
Description: hypothetical protein Ctob_007554 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
     0.0014   19.1   0.1     0.0033   17.9   0.1    1.6  1  TPR_19    Tetratricopeptide repeat
  ------ inclusion threshold ------
       0.14   12.8   0.3       0.14   12.8   0.3    3.4  4  TPR_16    Tetratricopeptide repeat
       0.59   10.5   4.3       0.33   11.3   0.7    2.3  2  PSD5      Protein of unknown function (DUF1595)


Domain annotation for each model (and alignments):
>> TPR_19  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.9   0.1   5.5e-07    0.0033      15      67 ..     142     194 ..     141     195 .. 0.95

  Alignments for each domain:
  == domain 1  score: 17.9 bits;  conditional E-value: 5.5e-07
      TPR_19  15 eqalqedpknaearllLAeallalgqldeAealLdalpeedpddaryasLlAk 67 
                 e++l+ +p ++ a+ +LA+a+   ++l eA+ + ++l ++d+ +a++++Ll +
  KOO23787.1 142 ESVLSVEPLHPTALWRLAKAHEGGNNLSEAIVAASKLARSDASHAEAHRLLDR 194
                 78999*********************************************866 PP

>> TPR_16  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.8   0.7      0.13     8e+02      17      42 ..      55      79 ..      50      96 .. 0.73
   2 ?   -0.7   0.3      0.41   2.4e+03      44      56 ..     113     125 ..     111     127 .. 0.70
   3 ?   12.8   0.3   2.3e-05      0.14      26      62 ..     147     180 ..     142     187 .. 0.79
   4 ?    0.9   0.2      0.13   7.6e+02      23      40 ..     175     192 ..     173     194 .. 0.77

  Alignments for each domain:
  == domain 1  score: 0.8 bits;  conditional E-value: 0.13
      TPR_16 17 aaaleaalkrdpssPdaaeAllllgd 42
                ++a++++l+++ +s+ +a  + +l++
  KOO23787.1 55 LRAFRRTLDARDRSS-RAGVYKELAN 79
                689999999998877.5666666665 PP

  == domain 2  score: -0.7 bits;  conditional E-value: 0.41
      TPR_16  44 alrqgrlaeAaal 56 
                 a ++++l eAaa+
  KOO23787.1 113 ANHLSELVEAAAA 125
                 6688888888854 PP

  == domain 3  score: 12.8 bits;  conditional E-value: 2.3e-05
      TPR_16  26 rdpssPdaaeAllllgdaalrqgrlaeAaalyraalr 62 
                     +P+++ Al+ l+ a+   ++l eA+ +  +++r
  KOO23787.1 147 V---EPLHPTALWRLAKAHEGGNNLSEAIVAASKLAR 180
                 4...4************************55555444 PP

  == domain 4  score: 0.9 bits;  conditional E-value: 0.13
      TPR_16  23 alkrdpssPdaaeAllll 40 
                 a k+++s+  +aeA+ ll
  KOO23787.1 175 ASKLARSDASHAEAHRLL 192
                 556677779999999876 PP

>> PSD5  Protein of unknown function (DUF1595)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.7   5.5e-05      0.33      12      52 ..      56      95 ..      54      96 .. 0.89
   2 ?   -0.9   0.1      0.36   2.2e+03      15      36 ..     180     201 ..     171     206 .. 0.76

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 5.5e-05
        PSD5 12 rAfRRplteaeverllalfdsaresgesfeegvrlalqavL 52
                rAfRR l++ +  + + ++++ ++++   +e+ r+al + L
  KOO23787.1 56 RAFRRTLDARDRSSRAGVYKELANKHF-AKEAWRVALVGYL 95
                9********************888887.8889999998766 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 0.36
        PSD5  15 RRplteaeverllalfdsares 36 
                 R   + ae  rll+  +++ ++
  KOO23787.1 180 RSDASHAEAHRLLDRLQQRTAQ 201
                 7778889999999988887666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (207 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       640  (0.0356964); expected 358.6 (0.02)
Passed bias filter:                      480  (0.0267723); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.41u 0.26s 00:00:00.67 Elapsed: 00:00:00.40
# Mc/sec: 1565.24
//
Query:       KOO23788.1  [L=1130]
Description: hypothetical protein Ctob_002970 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1130 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       470  (0.0262145); expected 358.6 (0.02)
Passed bias filter:                      372  (0.0207485); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.73u 0.28s 00:00:01.01 Elapsed: 00:00:00.45
# Mc/sec: 7534.69
//
Query:       KOO23789.1  [L=350]
Description: fggy-family pentulose kinase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    7.2e-29  100.9   2.7    9.9e-29  100.5   2.7    1.2  1  FGGY_C    FGGY family of carbohydrate kinases, C-terminal dom
     0.0033   17.0   0.0     0.0095   15.5   0.0    1.7  1  FGGY_N    FGGY family of carbohydrate kinases, N-terminal dom
  ------ inclusion threshold ------
       0.19   11.7   0.1         32    4.7   0.1    2.6  2  RHH_1     Ribbon-helix-helix protein, copG family


Domain annotation for each model (and alignments):
>> FGGY_C  FGGY family of carbohydrate kinases, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  100.5   2.7   1.7e-32   9.9e-29      64     198 .]     146     292 ..     100     292 .. 0.85

  Alignments for each domain:
  == domain 1  score: 100.5 bits;  conditional E-value: 1.7e-32
      FGGY_C  64 irdagev.........eeslaelaaaeavadaggvvfvpafsglrapywdpdargtitglssstt...lahiarAaleavalqlrailealekdsgkpl 150
                 +++a  v          + +a++a ++ ++ a+ v++ p+  g+r+p++dp +r++++gl+ s t   la +++Aa++a+a+q+r+i+ea+e+  + p+
  KOO23789.1 146 LARARGVpptialnerLKEMASAAGTSVAVLARDVHVTPDALGNRSPLADPLMRAAVVGLGLSATlddLAFLYLAAVQALAYQTRHIIEAMEEAGHPPI 244
                 44444445555555554677777788889999*******************************999999*************************5555* PP

      FGGY_C 151 drlavdGGgskndllmqllAdilgvpVerpktaeatalGaAilAavaa 198
                 ++++++GG+skn l + + Ad+lg++++ p ++ea++lGaAil+ vaa
  KOO23789.1 245 TSVIACGGLSKNVLYVSTHADVLGRTIYLPVQDEAVLLGAAILGTVAA 292
                 ********************************************9985 PP

>> FGGY_N  FGGY family of carbohydrate kinases, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.0   1.6e-06    0.0095     133     244 ..       3     130 ..       1     131 [. 0.66

  Alignments for each domain:
  == domain 1  score: 15.5 bits;  conditional E-value: 1.6e-06
                 HHHHHHHHHHSCCHHCCHC...EEEEHHHHHHHHHCT......--EEEHHHHCTTTSEETTTTEE-HHHHHHTT--GGGS-......EEE-TCC.EEEE CS
      FGGY_N 133 lsklkWlkenepevfekie...kflliddyLiwrLtg......qfvtdvtnasesmlfnikklewdeellailgipeelLP......klvesse.iige 215
                 + k+ Wlk++ p++f+++    kfl   dyL++r t+        +t v +       + +   +d++ l ++g + + L+      ++  ++e ++g 
  KOO23789.1   3 VPKMLWLKQHLPDAFARVIsggKFLDLPDYLTYRATDctddvrSLCTVVCKWNYDANGEGTGVGFDRNFLGSVGFADNELSdytigaRVAAPGEpVAGG 101
                 689**************98899************99866533333333333333333333444688888888888888665222222444444336778 PP

                 EECCCCCCTT.S-EEEEEEEEEHHHHHHH CS
      FGGY_N 216 lkpelaaklGlkegvpvvggggDqqaaal 244
                 l p++aa +Gl +g+  + g  D  a+ +
  KOO23789.1 102 LGPKAAADFGLLAGTALAVGMIDAHAGGI 130
                 88888888888888888888888777665 PP

>> RHH_1  Ribbon-helix-helix protein, copG family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.2   0.0    0.0073        43      12      23 ..     141     152 ..     137     154 .. 0.85
   2 ?    4.7   0.1    0.0053        32      12      31 ..     160     179 ..     157     180 .. 0.91

  Alignments for each domain:
  == domain 1  score: 4.2 bits;  conditional E-value: 0.0073
                 HHHHHHHHHHTS CS
       RHH_1  12 erLdelarrrgr 23 
                  +L+elar+rg+
  KOO23789.1 141 SELEELARARGV 152
                 68********95 PP

  == domain 2  score: 4.7 bits;  conditional E-value: 0.0053
                 HHHHHHHHHHTSSHHHHHHH CS
       RHH_1  12 erLdelarrrgrSrSelIRe 31 
                 erL e+a + g S+  l R+
  KOO23789.1 160 ERLKEMASAAGTSVAVLARD 179
                 89*************99997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (350 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       355  (0.0198003); expected 358.6 (0.02)
Passed bias filter:                      287  (0.0160076); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.45u 0.23s 00:00:00.68 Elapsed: 00:00:00.40
# Mc/sec: 2653.16
//
Query:       KOO23790.1  [L=1144]
Description: putative ATP-dependent RNA helicase ddx46-like protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.1e-47  160.6   0.0      8e-47  159.3   0.0    1.7  2  DEAD        DEAD/DEAH box helicase
    2.2e-28   98.8   0.0    5.2e-28   97.6   0.0    1.7  1  Helicase_C  Helicase conserved C-terminal domain
    0.00042   20.1   0.1     0.0013   18.5   0.1    1.9  1  RRM_1       RNA recognition motif. (a.k.a. RRM, RBD, or RNP d
     0.0052   16.8   0.0      0.012   15.6   0.0    1.6  2  ResIII      Type III restriction enzyme, res subunit
  ------ inclusion threshold ------
       0.29   11.5   2.8        2.2    8.6   0.1    2.6  2  HBS1_N      HBS1 N-terminus


Domain annotation for each model (and alignments):
>> DEAD  DEAD/DEAH box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  159.3   0.0   2.2e-50     8e-47       1     176 []     524     698 ..     524     698 .. 0.95
   2 ?   -3.6   0.0       2.2   7.9e+03      77     104 ..     776     804 ..     739     807 .. 0.59

  Alignments for each domain:
  == domain 1  score: 159.3 bits;  conditional E-value: 2.2e-50
                 -HHHHHHHHHHHTTCEEEEEESTTSSHHHHHHHHHHHHHHHS...TTSTS-EEEEEESSHHHHHHHHHHHHHHTTTSTSEEEEEETTSSHHHHHHHHHT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD   1 tdiQaeaiplilgggdvlvaaeTGsGKTlaflipvlqivyet...kgktgpkalivePtreLaeqtlnnlkkfkkyidlrvlliiggvaardqlskldn 96 
                 ++iQa+++p+i++g+dv++ a+TGsGKT+ +++p+l++v+++      +gp  l+++PtreLa q+++++ kf k ++l + +++gg + + q+++l++
  KOO23790.1 524 FPIQAQSLPAIMSGRDVIGIAKTGSGKTMGYALPLLRHVMDQpalAPGDGPIGLVMVPTRELAMQVYREVAKFAKVVGLATAAVYGGADLKAQIAELKR 622
                 58**************************************9999989999***********************************************99 PP

                 TCSEEEEEHHHHHHHH..HCTS.SHCTTEEEEEEETHHHHHHTTTHHHHHHHHHHSHHHCTTSTTTSEEEEEESSBSHHHHHH CS
                 xxxxxxxxxxxxxxxx..xxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD  97 gvdivvgtpgrlddll..stgk.lnlsqvrflVlDEadrlldqgfsdfinrilnqlpqitcdgklqrqvivlSATlpkdvkkl 176
                 g++ivv tpgr++d+l  ++g+  nl++ +++VlDEadr+ d+gf ++i+ri+ ++       + +rq++++SAT+p+ v+kl
  KOO23790.1 623 GAEIVVCTPGRMIDMLtaNSGRvTNLRRATYVVLDEADRMFDMGFAPQIDRIVGNT-------RPDRQTLLFSATFPQAVEKL 698
                 9*************99884444377*******************************.......35678***********9986 PP

  == domain 2  score: -3.6 bits;  conditional E-value: 2.2
                 EEEEEETTSSHHHHHHHHHTT.CSEEEEE CS
                 xxxxxxxxxxxxxxxxxxxxx.xxxxxxx RF
        DEAD  77 rvlliiggvaardqlskldng.vdivvgt 104
                 +++  +g++++++ +++++ng + ++v+t
  KOO23790.1 776 TLHGGMGQDDRDSTIANFKNGdISVLVAT 804
                 33344566666677777777778888887 PP

>> Helicase_C  Helicase conserved C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   97.6   0.0   1.5e-31   5.2e-28       2     111 .]     733     842 ..     732     842 .. 0.93

  Alignments for each domain:
  == domain 1  score: 97.6 bits;  conditional E-value: 1.5e-31
                 HHHHHHHHHHHTTTTSEEEEEESSHHHHHH.HHHHHHHTTSTEEEESTTSTHHHHHHHHHHHHTTSSSEEEESGGGTSSSTSTTESEEEESSSSSSHHH CS
  Helicase_C   2 kleallellkleeeggkilifvntidrlek.vklllekkgikvavlhgelpqnereeileqfnkgesdvLiatdvaerGidipkvnlVinfdlprnvts 99 
                 kl +l++ll ++ ++g+ l+fv t++  ++ ++ ll k+++ +a+lhg + q++r+ ++++f++g++ vL+at+va+rG+d++++ +Vin+++p  +++
  KOO23790.1 733 KLPRLCHLLRQHYDEGQQLVFVDTQEASDNlFRQLL-KQNLPCATLHGGMGQDDRDSTIANFKNGDISVLVATSVAARGLDVKGLAVVINYEVPNHYED 830
                 778899999999**************9996744444.567*********************************************************** PP

                 HHHHHTTSSSTT CS
  Helicase_C 100 yiqriGRtgRag 111
                 y++r+GRtgRag
  KOO23790.1 831 YVHRVGRTGRAG 842
                 **********97 PP

>> RRM_1  RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.5   0.1   3.7e-07    0.0013      41      69 ..     215     243 ..     210     244 .. 0.92

  Alignments for each domain:
  == domain 1  score: 18.5 bits;  conditional E-value: 3.7e-07
                 EEEEEESSHHHHHHHHHHHTTEEETTEEE CS
       RRM_1  41 fafVeFeskedAekAlealngkklggrel 69 
                   fVeFe+ e+A+++ ++++g+ ++gr++
  KOO23790.1 215 RIFVEFEDAEAAAECARSMDGRFFDGRRV 243
                 57*************************97 PP

>> ResIII  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.0   3.3e-06     0.012      30     170 ..     543     692 ..     473     693 .. 0.80
   2 ?   -3.7   0.0         3   1.1e+04      46      79 ..     739     773 ..     736     804 .. 0.56

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 3.3e-06
                 EESTTSTHHHHH.HHHHHHH-S..........-EEEEESSHHHHHHHHHHGGGGTGG....GEEEESSS-B--........-SEEEEEHHHHHHTH... CS
      ResIII  30 kmaTGtGKTlva.aklierllkkgkee.....kflflvprkslleqtleefkkflseaykeigkkvsgdkkka.kekdstnkkilvttiqsldadseee 121
                  + TG+GKT+ + + l ++++ +           l++vp+++l  q ++e++kf++    ++  ++ g   ka  ++ +  ++i+v t  ++   +  +
  KOO23790.1 543 IAKTGSGKTMGYaLPLLRHVMDQPALApgdgpIGLVMVPTRELAMQVYREVAKFAKVVGLATAAVYGGADLKAqIAELKRGAEIVVCTPGRMIDML--T 639
                 568*******996778888888766669999999***************9999999998887777777666664566788999****998888887..2 PP

                 .....HHHTTT-SEEEEETGGGTTS....TTTHHHHHT-.--SEEEEEESS-S CS
      ResIII 122 eeeseellrdrfdviiiDEaHrlgak...kswreilekf.keavllglTATpe 170
                  +        r  +++ DEa r+ ++    ++ +i+ +  ++   l ++AT++
  KOO23790.1 640 ANSGRVTNLRRATYVVLDEADRMFDMgfaPQIDRIVGNTrPDRQTLLFSATFP 692
                 23344444455569***********9554477776555424588899999986 PP

  == domain 2  score: -3.7 bits;  conditional E-value: 3
                 HHH-S.....-EEEEESSHHHHHHHHHHG.GGGTG CS
      ResIII  46 erllkkgkeekflflvprkslleqtleef.kkfls 79 
                   l+++++e + l++v++++  + + +++ k+ l+
  KOO23790.1 739 HLLRQHYDEGQQLVFVDTQEASDNLFRQLlKQNLP 773
                 55666666668888888887666666443133333 PP

>> HBS1_N  HBS1 N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.1   0.6      0.07   2.5e+02       6      33 ..     425     489 ..     404     491 .. 0.82
   2 ?    8.6   0.1   0.00061       2.2      18      56 ..    1001    1038 ..     986    1040 .. 0.87

  Alignments for each domain:
  == domain 1  score: 2.1 bits;  conditional E-value: 0.07
      HBS1_N   6 eddeeeeeee.....................................eLsdedqarLrscldevr 33 
                 ++deee+e++                                     ++s+e+ + Lr+ ld ++
  KOO23790.1 425 GEDEEEDEADralaarakkkelpkidhstveyapfrknfyvevpeisNMSEEQVEELRKSLDSIK 489
                 34444444447999999999999999999999999999999999999999999999999999876 PP

  == domain 2  score: 8.6 bits;  conditional E-value: 0.00061
      HBS1_N   18 sdedqarLrscldevrevLgeeaskvtvtekqikeAlwk 56  
                  ++ + ar++s  ++vr++L++ ++k ++  +   eAl+k
  KOO23790.1 1001 TQLQNARMASLPPAVRKALEAAQEK-AAEAAAAREALLK 1038
                  67889***************88877.5999999999998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1144 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       997  (0.0556082); expected 358.6 (0.02)
Passed bias filter:                      469  (0.0261587); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.78u 0.26s 00:00:01.04 Elapsed: 00:00:00.41
# Mc/sec: 8406.60
//
Query:       KOO23791.1  [L=145]
Description: hypothetical protein Ctob_002973 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.04   14.0   0.0      0.088   12.9   0.0    1.5  2  EELM2     Extended EGL-27 and MTA1 homology domain
      0.048   13.8   0.3       0.37   10.9   0.0    2.3  3  4PPT_N    4'-phosphopantetheinyl transferase N-terminal domai


Domain annotation for each model (and alignments):
>> EELM2  Extended EGL-27 and MTA1 homology domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   9.8e-06     0.088      97     126 ..      21      50 ..       3      60 .. 0.77
   2 ?   -1.9   0.0      0.36   3.2e+03      55      93 ..      78     117 ..      60     127 .. 0.54

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 9.8e-06
       EELM2  97 igWqPfspeyayklLhfadYdpkkalrllk 126
                  g   fs e a+ +Lh  +Y+++ al  l+
  KOO23791.1  21 DGAPRFSEEVALSILHDLRYNAEAALAALR 50 
                 344459*******************98875 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 0.36
       EELM2  55 spsalervkekilkegakdkvikn.deelaefvkevaknW 93 
                 s+  l+r +e++ +   +d   ++ d+ ++e+ ke+a  +
  KOO23791.1  78 SVLWLQRLREHQRRVAWSDGEKEAlDAGITEYGKELASVY 117
                 5555665555443322222211112445555555555555 PP

>> 4PPT_N  4'-phosphopantetheinyl transferase N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   4.1e-05      0.37      35      62 ..      13      40 ..       4      48 .. 0.81
   2 ?    1.5   0.1     0.037   3.3e+02      21      39 ..      39      60 ..      38      78 .. 0.68
   3 ?   -1.9   0.0      0.44   3.9e+03      39      50 ..      85      96 ..      71      98 .. 0.57

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 4.1e-05
      4PPT_N 35 avpllsgerraPlwpaglvgSIsHtdgl 62
                + ++l ++++aP ++++++ SI H+  +
  KOO23791.1 13 TKAVLARADGAPRFSEEVALSILHDLRY 40
                4578889*****************9766 PP

  == domain 2  score: 1.5 bits;  conditional E-value: 0.037
      4PPT_N 21 RicAraalarlgle...avpll 39
                R+ A aala+l ++   + p +
  KOO23791.1 39 RYNAEAALAALRHCvawMQPPP 60
                8999999999987733333444 PP

  == domain 3  score: -1.9 bits;  conditional E-value: 0.44
      4PPT_N 39 lsgerraPlwpa 50
                l++++r+  w++
  KOO23791.1 85 LREHQRRVAWSD 96
                345555556655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (145 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       453  (0.0252663); expected 358.6 (0.02)
Passed bias filter:                      362  (0.0201908); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.38u 0.23s 00:00:00.61 Elapsed: 00:00:00.39
# Mc/sec: 1125.16
//
Query:       KOO23792.1  [L=329]
Description: hypothetical protein Ctob_002974 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (329 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       407  (0.0227007); expected 358.6 (0.02)
Passed bias filter:                      309  (0.0172346); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.45u 0.24s 00:00:00.69 Elapsed: 00:00:00.40
# Mc/sec: 2443.13
//
Query:       KOO23793.1  [L=185]
Description: ras-related protein rab-5c [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    6.4e-61  204.7   0.0    7.8e-61  204.4   0.0    1.0  1  Ras          Ras family
    1.1e-35  122.5   0.0    1.7e-35  121.8   0.0    1.3  1  Roc          Ras of Complex, Roc, domain of DAPkinase
    1.1e-12   47.8   0.0    1.3e-12   47.5   0.0    1.1  1  Arf          ADP-ribosylation factor family
    3.2e-05   24.0   0.0    5.2e-05   23.3   0.0    1.3  1  MMR_HSR1     50S ribosome-binding GTPase
    0.00029   20.3   0.0    0.00036   20.0   0.0    1.1  1  Gtr1_RagA    Gtr1/RagA G protein conserved region
     0.0015   18.5   0.3       0.44   10.4   0.1    2.2  2  RsgA_GTPase  RsgA GTPase
     0.0085   15.7   0.0       0.02   14.4   0.0    1.6  1  GTP_EFTU     Elongation factor Tu GTP binding domain
  ------ inclusion threshold ------
      0.018   15.4   0.1      0.026   14.9   0.1    1.3  1  AAA_16       AAA ATPase domain


Domain annotation for each model (and alignments):
>> Ras  Ras family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  204.4   0.0   3.5e-64   7.8e-61       1     156 [.      14     169 ..      14     173 .. 0.99

  Alignments for each domain:
  == domain 1  score: 204.4 bits;  conditional E-value: 3.5e-64
                 EEEEEESTTSSHHHHHHHHHHSSCSSSCTTTSSEEEEEEEEEETTEEEEEEEEEETTSGGGHHHHHHHHTTESEEEEEEETTBHHHHHTHHHHHHHHHH CS
         Ras   1 KlvlvGdsavGKtslllrfvkdkFkeeyesTigvdfytkeievdgkevkleiwDTAGqeefkslrelyyrdaegillvyditsresfenvkkwveeikr 99 
                 Klvl+GdsavGK+sl+lrfv+++F e +esTig++f+t+++ +++++vk+eiwDTAGqe+++sl+++yyr+a ++++vydit+r+sf+++k+wv+e++r
  KOO23793.1  14 KLVLLGDSAVGKSSLVLRFVRGQFFEYQESTIGAAFLTQTVALNETTVKFEIWDTAGQERYHSLAPMYYRGAAAAIVVYDITNRDSFQRAKQWVKELQR 112
                 99************************************************************************************************* PP

                 HSTTTSEEEEEEETTTGGGG-SS-HHHHHHHHHHHTSEEEEEBTTTTCTHHHHHHHH CS
         Ras 100 vaeenvpivLvGnKvDleekravsteegeelakelglkfletSAktnenveeafeel 156
                 + + n++i+L GnK+Dl++kr+v+ ee+e++a+++g+ f+etSAkt++nv+e+f ++
  KOO23793.1 113 QGNPNIVIALAGNKSDLNSKRKVEPEEAESYASDNGIFFMETSAKTATNVNELFVAI 169
                 ******************************************************887 PP

>> Roc  Ras of Complex, Roc, domain of DAPkinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  121.8   0.0   7.7e-39   1.7e-35       1     119 [.      14     128 ..      14     129 .. 0.89

  Alignments for each domain:
  == domain 1  score: 121.8 bits;  conditional E-value: 7.7e-39
                 EEEEESSTTSSHHHHHHCHCT-CCC-EEETTTTEEEEEEECGGSGGCTTBTTTTCEEEEEEEE-SGGCTTTT-HHHHCTSCEEEEEEE...GHHHHCHH CS
         Roc   1 KvvlvGdsgvGKtsllkrfvedkfsekekstigvdfltkevtkikgvendkkvkkvklniWDtaGqerfrslhplylreaalailvyd...srssenlk 96 
                 K+vl+Gds+vGK+sl+ rfv+++f e ++stig+ flt++v  +++       ++vk++iWDtaGqer++sl+p+y+r+aa+ai+vyd   ++s++++k
  KOO23793.1  14 KLVLLGDSAVGKSSLVLRFVRGQFFEYQESTIGAAFLTQTV-ALNE-------TTVKFEIWDTAGQERYHSLAPMYYRGAAAAIVVYDitnRDSFQRAK 104
                 99************************************987.3333.......4699*******************************7533367999* PP

                 HHHHHHHHHCSSS-EE.EEEE-TT CS
         Roc  97 eWlkelkkvagkspvi.lvgnkiD 119
                 +W+kel+++++ ++vi l gnk D
  KOO23793.1 105 QWVKELQRQGNPNIVIaLAGNKSD 128
                 ********988665543999**99 PP

>> Arf  ADP-ribosylation factor family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.5   0.0   5.8e-16   1.3e-12      14     133 ..      12     135 ..       6     170 .. 0.81

  Alignments for each domain:
  == domain 1  score: 47.5 bits;  conditional E-value: 5.8e-16
                 EEEEEEEESTTSSHHHHHHHHHHSSCEE.CSSSSS..EEEEEEEE..TTEEEEEEEE-SSGGGGGGGGGGCTTESEEEEEEETT-CTTHHHHHHHHHHH CS
         Arf  14 elrilllGLDnaGKtTilkklkleelvt.tvPTig..fnveelei..knlkftvwDvGGqeklRplWknYfektdavifvvDsadreRleeakeeLkal 107
                 +++++llG  + GK+ ++ ++  +++ + +  Tig  f +++++    ++kf++wD  Gqe+  +l   Y++   a i v D ++r+ ++ ak+ +k+l
  KOO23793.1  12 QYKLVLLGDSAVGKSSLVLRFVRGQFFEyQESTIGaaFLTQTVALneTTVKFEIWDTAGQERYHSLAPMYYRGAAAAIVVYDITNRDSFQRAKQWVKEL 110
                 689*****999************999884567888334566666533789**********************************************997 PP

                 CTSGCCTTSEEEEEEE-TTSTTSS-H CS
         Arf 108 leeeelkevallvlaNKqDlpealse 133
                  +++ + ++++ + +NK Dl++  + 
  KOO23793.1 111 -QRQGNPNIVIALAGNKSDLNSKRKV 135
                 .6667888999999*****9865443 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.3   0.0   2.3e-08   5.2e-05       2     107 ..      15     116 ..      14     128 .. 0.61

  Alignments for each domain:
  == domain 1  score: 23.3 bits;  conditional E-value: 2.3e-08
                 EEEEESTTSSHHHHHHHHHT......STEEESSSTTSSSSEEEEEEEETTEEEEEEECGGCSSHHHHHHHHHHHHHHHHCTSEEEEEEETT.TTCSHHH CS
    MMR_HSR1   2 vaivGrpNvGKStLinaltg......ekaivsdkpgtTrdinegrvklkgkeielvDtpGliegaseekglgkaflaleeadlillvvdas.eeklkpl 93 
                  +++G + vGKS+L+ + ++      +   +   ++ T+++   + +    ++e++Dt+G  e   + ++l+  + +   a ++++v d++ ++++++ 
  KOO23793.1  15 LVLLGDSAVGKSSLVLRFVRgqffeyQ-ESTIGAAFLTQTVALNETT---VKFEIWDTAG-QE---RYHSLAPMYYR--GAAAAIVVYDITnRDSFQRA 103
                 6899***************85444322.2333334445544444333...45********.44...33366666664..46667777776633456666 PP

                 HHHHHHHHHHTTSE CS
    MMR_HSR1  94 deeleelleeakkp 107
                 ++ ++el+++ + p
  KOO23793.1 104 KQWVKELQRQ-GNP 116
                 6666666543.333 PP

>> Gtr1_RagA  Gtr1/RagA G protein conserved region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.0   0.0   1.6e-07   0.00036       1     128 [.      14     134 ..      14     161 .. 0.75

  Alignments for each domain:
  == domain 1  score: 20.0 bits;  conditional E-value: 1.6e-07
   Gtr1_RagA   1 kvLLmGksgsGKtsmr.siiFdnylardtlrlgatidveksevrflgnltlnlwDcgGqeafveeylssqkeeifrnvgvliyVfDvesreleedletl 98 
                 k++L+G s  GK+s+  + +  ++   +  ++ga+  ++   + +   +++++wD  Gqe++        +   +r  ++ i V D+++r   +++++ 
  KOO23793.1  14 KLVLLGDSAVGKSSLVlRFVRGQFFEYQESTIGAAFLTQTVAL-NETTVKFEIWDTAGQERYHSL-----APMYYRGAAAAIVVYDITNR---DSFQRA 103
                 899***********86245555555556666666665555555.566789*********998765.....5788899999999*****55...555666 PP

   Gtr1_RagA  99 keileal.rqyspeakvfvlihKmDliqede 128
                 k+ +++l rq +p++ +    +K Dl ++++
  KOO23793.1 104 KQWVKELqRQGNPNIVIALAGNKSDLNSKRK 134
                 6666655257899999999999999876554 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.4   0.1    0.0002      0.44     102     120 ..      15      33 ..       8      74 .. 0.84
   2 !    6.6   0.0     0.003       6.6      45      94 ..     116     166 ..      72     171 .. 0.77

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.0002
                  EEEECSTTSSHHHHHHHHC CS
  RsgA_GTPase 102 svlvGqSGvGKStLinall 120
                   vl+G S vGKS+L+ +++
   KOO23793.1  15 LVLLGDSAVGKSSLVLRFV 33 
                  69************97665 PP

  == domain 2  score: 6.6 bits;  conditional E-value: 0.003
                  TT-EEEEEEE-GGG--HHH.HHHHHHHHHHHTTSEEEE--TTTHTTHHHHH CS
  RsgA_GTPase  45 kgiepvivlnKiDlleeee.eleelkeelealgyevllvsaktkegleelk 94 
                   +i + ++ nK Dl ++++ e ee ++  ++ g+ ++ +sakt ++++el 
   KOO23793.1 116 PNIVIALAGNKSDLNSKRKvEPEEAESYASDNGIFFMETSAKTATNVNELF 166
                  3455555669******99977778888888999999999999999999885 PP

>> GTP_EFTU  Elongation factor Tu GTP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.4   0.0   9.1e-06      0.02      53     187 ..      46     168 ..      37     175 .. 0.67

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 9.1e-06
                 TSCSSCEEEEEETTCSSEEEEEEEESSSGGGHHHHHHHHHT-SEEEEEEETTTBSTHH.HHHHHHHHHHTTTE.EEEEE..ESCGSTHHHHHHHHHHHH CS
    GTP_EFTU  53 giTiksaaisleketkkylinliDtPGHvdFskevirglrvlDgavlvvdaveGvepq.teevlrlalkegvp.iivfi..NKmDrlkaelkeiveevk 147
                 g    ++++ l+  +++ ++ + Dt G + + +     +r +  a++v d+++    q  ++ ++ ++++g p i++++  NK D   ++  e  e+ +
  KOO23793.1  46 GAAFLTQTVALN--ETTVKFEIWDTAGQERYHSLAPMYYRGAAAAIVVYDITNRDSFQrAKQWVKELQRQGNPnIVIALagNKSDLNSKRKVEPEEAES 142
                 444445555555..9999********************************9976555514555566666666665544455****98665444444333 PP

                 HHHHHHHHHHHHHHHTTTTTEEEEEEBTTTTBTHHHHHHH CS
    GTP_EFTU 148 qklsrkeeklekygekgekevpvvfgSalkgegvktllea 187
                 +              +  + + ++ +Sa+++ +v++l+ a
  KOO23793.1 143 YAS------------D--NGIFFMETSAKTATNVNELFVA 168
                 222............2..2466666777777777766655 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.9   0.1   1.2e-05     0.026      27     106 ..      15     115 ..       4     161 .. 0.56

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 1.2e-05
      AAA_16  27 vllsGesGvGKsslvrellr....alekd..ggiflrgkcdqlesa...........ipy....sa.laqalareellrqlldeaesaeleawreklee 103
                 ++l G+s+vGKsslv ++ r    +++++  g+ fl+++   +e+              +    ++ + + +a+  ++ ++ ++++ + + +w ++l++
  KOO23793.1  15 LVLLGDSAVGKSSLVLRFVRgqffEYQEStiGAAFLTQTVALNETTvkfeiwdtagqE-RyhslAPmYYRGAAAAIVVYDITNRDSFQRAKQWVKELQR 112
                 6799***********5555433333333356555555555555333222222222221.0222333344444444455555555555555555555555 PP

      AAA_16 104 ala 106
                 + +
  KOO23793.1 113 QGN 115
                 444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (185 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       520  (0.0290033); expected 358.6 (0.02)
Passed bias filter:                      436  (0.0243181); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.44u 0.24s 00:00:00.68 Elapsed: 00:00:00.39
# Mc/sec: 1437.15
//
Query:       KOO23794.1  [L=617]
Description: hypothetical protein Ctob_002976 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    8.9e-09   35.9   0.0    2.6e-08   34.3   0.0    1.8  2  Plus-3        Plus-3 domain
    1.1e-06   28.5   0.0    3.5e-06   26.9   0.0    1.9  1  BAH           BAH domain
  ------ inclusion threshold ------
      0.033   14.1   0.0      0.097   12.6   0.0    1.9  1  DEK_C         DEK C terminal domain
        4.3    7.7   8.6        1.8    9.0   0.8    2.6  2  RNA_pol_Rpc4  RNA polymerase III RPC4


Domain annotation for each model (and alignments):
>> Plus-3  Plus-3 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.0       2.6   1.2e+04      69     104 ..     301     336 ..     272     338 .. 0.60
   2 !   34.3   0.0   5.8e-12   2.6e-08       2     105 ..     371     470 ..     370     473 .. 0.86

  Alignments for each domain:
  == domain 1  score: -3.2 bits;  conditional E-value: 2.6
      Plus-3  69 kttnkylklrhgkseksfrlekvSnspfteeEferw 104
                   t+ y+  r  +++k + l+++  ++ +e+   +w
  KOO23794.1 301 DSTHEYIAWRAYDNKKVYALTELPSKRLQEAATMEW 336
                 347777777777777777777777777777766666 PP

  == domain 2  score: 34.3 bits;  conditional E-value: 5.8e-12
      Plus-3   2 lnkirlsRsklekll.eepf..fedavkgcfvRvkigeeretgqpvyrlaqivgvkeeekgkpyklkkgkkttnkylklrhgkseksfrlekvSnspft 97 
                 l  i l R++le +  ++p+  f ++ +gc +R +   +   g  + + a + +vk+  + +pykl  g+ +t+ +l++r ++ ++ + l+ +Sn+p+t
  KOO23794.1 371 LAAIWLPRKHLEIWEaQQPNttFRKVAQGCLIRGSQLIN---GARSFYAAYVLEVKR--SPRPYKL--GQRVTDAALRVRTATGDRLVDLSALSNQPVT 462
                 6789999****999876665459**********998855...666777788888866..899****..7799**********88899************ PP

      Plus-3  98 eeEferwk 105
                 e+E++r+k
  KOO23794.1 463 ESELSRFK 470
                 *****986 PP

>> BAH  BAH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.9   0.0   7.8e-10   3.5e-06       2      94 ..     186     292 ..     185     318 .. 0.82

  Alignments for each domain:
  == domain 1  score: 26.9 bits;  conditional E-value: 7.8e-10
                 EEETTGEEEEEETTSTTEEEEEEEEEEEEETTSTCEEEEEEEEEE.............ECGGGS....TTTTHCCCTTEEEEEEEEEEEEGGGEEEEEE CS
         BAH   2 tyavGdfVyfddtstdepyqirrIeeLkenakneeaeatvlvdwf.............lrpeet....ksalklrqkrElfltrqseilplaairgkcr 83 
                 +++vG+ Vy+d +     ++++r++e+++ + +  +e +++++w+               p+++    + ++ ++q++El ++ + ++  +++i + c+
  KOO23794.1 186 ELRVGQDVYLDTNG--SEPYVARLQEIFVYSFAP-KEVYFNARWYyrapdcteyarlaGAPSDYevlfEGEPLQAQPKELLFSMHMDENHADCILRACS 281
                 589*******9999..7788*************9.99********88888888888884444444447777888888********************** PP

                 EEEHHHHCTEC CS
         BAH  84 Vvllsdleeaq 94 
                 V  l++ ee  
  KOO23794.1 282 VHMLQTEEEPA 292
                 **999888755 PP

>> DEK_C  DEK C terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   2.2e-05     0.097       4      53 ..      22      76 ..      19      77 .. 0.91

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 2.2e-05
       DEK_C  4 eeirkaireiLreaDLdtvTkkkvReqLeekl.....gvdLsekKafIkalIdei 53
                e +r+ ++++L++   d +T k v  +Le++l     ++ L+++K+ Ika++d++
  KOO23794.1 22 ERLREGLETLLQTESWDVLTLKVVLSRLEQQLlpqqpPGTLKPYKKGIKAEVDTL 76
                789****************************988887888999********9987 PP

>> RNA_pol_Rpc4  RNA polymerase III RPC4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.0   0.8   0.00041       1.8      16     112 ..     108     200 ..      53     222 .. 0.64
   2 ?    2.2   1.6     0.051   2.3e+02      26      51 ..     516     541 ..     472     578 .. 0.54

  Alignments for each domain:
  == domain 1  score: 9.0 bits;  conditional E-value: 0.00041
  RNA_pol_Rpc4  16 lkqkavsaaeddkseaesqsaekakaeeeskaekasgaeaeekkskkksskkkkkkkskalklkslpeGviGkLlvhk..SGkvelrlGgillevsp 110
                   +k      ++ ++s++e+ + + ++++e+  +e+a +++++  +++++++++ +kk+ ++++  +  +G  Gk+  ++   G +elr+G+  +  + 
    KOO23794.1 108 MK------RQRVSSASEPIEPTFKEDAEQVMQEDAAAEKEALVDDEEQENEAPRKKRRPKAEEDEEVDGDDGKMFYRQmfKGETELRVGQDVYLDTN 198
                   33......33334444444444333333333333333333334444445555555566666666677799999988885569999999984444444 PP

  RNA_pol_Rpc4 111 Ga 112
                   G+
    KOO23794.1 199 GS 200
                   55 PP

  == domain 2  score: 2.2 bits;  conditional E-value: 0.051
  RNA_pol_Rpc4  26 ddkseaesqsaekakaeeeskaekas 51 
                   +++++a ++++++a+ +e++++e++ 
    KOO23794.1 516 EEQERAREAEEREAERKERERDEVRR 541
                   11111111111111112222222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (617 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1775  (0.0990016); expected 358.6 (0.02)
Passed bias filter:                      513  (0.0286129); expected 358.6 (0.02)
Passed Vit filter:                        71  (0.00396006); expected 17.9 (0.001)
Passed Fwd filter:                        15  (0.000836633); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.67u 0.24s 00:00:00.91 Elapsed: 00:00:00.40
# Mc/sec: 4594.01
//
Query:       KOO23795.1  [L=353]
Description: cell division cycle protein 27-like protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.2e-46  153.0   6.1    3.2e-08   33.1   0.2    7.5  7  TPR_1       Tetratricopeptide repeat
    4.4e-36  120.1  13.5      7e-06   25.8   0.2    7.9  8  TPR_2       Tetratricopeptide repeat
    6.5e-33  110.2   4.9    2.4e-06   27.3   0.0    7.5  7  TPR_8       Tetratricopeptide repeat
    5.8e-28   96.3   8.6    3.4e-08   33.0   0.2    7.2  7  TPR_11      TPR repeat
    4.8e-24   84.5   9.2    1.6e-06   28.3   0.1    6.3  5  TPR_12      Tetratricopeptide repeat
    3.1e-22   77.3   7.7    0.00075   19.7   0.1    7.1  7  TPR_17      Tetratricopeptide repeat
      8e-21   74.3   7.6    3.1e-09   37.2   0.1    5.5  5  TPR_19      Tetratricopeptide repeat
    2.5e-20   72.8   0.2    3.9e-06   27.4   0.0    5.4  6  TPR_16      Tetratricopeptide repeat
      1e-19   69.5   8.1     0.0048   17.6   0.0    7.3  7  TPR_14      Tetratricopeptide repeat
      9e-19   67.4   1.0    1.2e-05   25.3   0.0    5.3  5  TPR_9       Tetratricopeptide repeat
    2.6e-14   52.1   8.3     0.0013   18.6   0.0    7.4  8  TPR_7       Tetratricopeptide repeat
      9e-13   48.0  10.3      0.042   14.5   0.0    7.8  7  TPR_6       Tetratricopeptide repeat
    1.3e-10   41.3  12.1    0.00026   21.1   0.1    4.6  5  ANAPC3      Anaphase-promoting complex, cyclosome, subunit 3
    9.9e-10   38.0   5.9        7.5    6.6   0.0    7.2  7  TPR_10      Tetratricopeptide repeat
    1.8e-08   33.8   1.1    1.8e-05   24.0   0.2    2.5  3  ChAPs       ChAPs (Chs5p-Arf1p-binding proteins)
    2.7e-07   30.1   1.4      0.022   14.0   0.1    3.3  3  TPR_15      Tetratricopeptide repeat
    8.5e-06   25.7   2.6        2.2    8.4   0.1    5.4  5  Fis1_TPR_C  Fis1 C-terminal tetratricopeptide repeat
    2.2e-05   23.6   2.1      0.076   11.9   0.0    3.4  4  NARP1       NMDA receptor-regulated protein 1
    0.00025   20.8   2.5     0.0098   15.6   0.6    2.5  2  TPR_21      Tetratricopeptide repeat-like domain
    0.00054   20.2   2.8     0.0027   18.0   0.4    3.1  3  TPR_20      Tetratricopeptide repeat
    0.00085   18.8   1.4       0.11   11.9   0.0    3.3  3  Coatomer_E  Coatomer epsilon subunit
     0.0024   17.3   3.9       0.13   11.6   1.7    3.1  1  TPR_MalT    MalT-like TPR region
     0.0031   16.8   3.7       0.14   11.4   0.2    2.6  2  FAT         FAT domain
     0.0043   16.9   3.0       0.84    9.4   0.7    4.1  4  DUF5113     Domain of unknown function (DUF5113)
     0.0078   15.9   0.2         19    5.2   0.0    3.7  3  PPTA        Protein prenyltransferase alpha subunit repeat
     0.0087   16.5   2.1       0.69   10.3   0.0    3.5  4  BTAD        Bacterial transcriptional activator domain
  ------ inclusion threshold ------
      0.014   15.2   3.8       0.52   10.0   0.1    3.4  3  DUF2225     Uncharacterized protein conserved in bacteria (DU
      0.063   14.0   0.4        7.7    7.4   0.0    3.8  3  Sel1        Sel1 repeat


Domain annotation for each model (and alignments):
>> TPR_1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.0   0.0   0.00022      0.14       3      33 ..      61      91 ..      59      92 .. 0.92
   2 !   30.6   0.0     3e-10   1.9e-07       1      34 []     127     160 ..     127     160 .. 0.96
   3 !   22.4   0.2   1.2e-07   7.6e-05       1      33 [.     161     193 ..     161     194 .. 0.94
   4 !   33.1   0.2     5e-11   3.2e-08       2      32 ..     196     226 ..     195     226 .. 0.97
   5 !   21.6   0.0     2e-07   0.00013       3      34 .]     231     262 ..     229     262 .. 0.96
   6 ?    2.9   0.0      0.16     1e+02       3      22 ..     265     284 ..     263     295 .. 0.78
   7 !   25.9   0.0     9e-09   5.8e-06       3      34 .]     299     330 ..     298     330 .. 0.95

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 0.00022
                HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT CS
       TPR_1  3 alynlGnayfklgkydeAleyyekALelnPn 33
                +l++ G a+f++ +y eAl ++e A  l+P+
  KOO23795.1 61 VLNQVGRAHFEMVQYTEALRAFEHAQLLEPH 91
                68899********************999996 PP

  == domain 2  score: 30.6 bits;  conditional E-value: 3e-10
                 HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH CS
       TPR_1   1 akalynlGnayfklgkydeAleyyekALelnPnn 34 
                 a+a++  Gn++  ++++d Al+++++A++l+P++
  KOO23795.1 127 AYACCVVGNCFSLQKEHDTALKFFQRAIQLQPDF 160
                 7899999*************************97 PP

  == domain 3  score: 22.4 bits;  conditional E-value: 1.2e-07
                 HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT CS
       TPR_1   1 akalynlGnayfklgkydeAleyyekALelnPn 33 
                 a+a+   G+ y  + ++++A ++y+ A+++++ 
  KOO23795.1 161 AYAYTLSGHEYSANDDFEKAMACYRSAIRIDER 193
                 7899999***********************986 PP

  == domain 4  score: 33.1 bits;  conditional E-value: 5e-11
                 HHHHHHHHHHHHTT-HHHHHHHHHHHHHHST CS
       TPR_1   2 kalynlGnayfklgkydeAleyyekALelnP 32 
                 +a+y+lGn+yf+++k+d  + + +kAL +nP
  KOO23795.1 196 NAWYGLGNIYFRQEKFDFSEHHLKKALAINP 226
                 79****************************9 PP

  == domain 5  score: 21.6 bits;  conditional E-value: 2e-07
                 HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH CS
       TPR_1   3 alynlGnayfklgkydeAleyyekALelnPnn 34 
                  ++ lG+a+++++k  +Ale  + A++++P+n
  KOO23795.1 231 LYCYLGMALHSNQKTPQALEMLSSAIQIDPKN 262
                 69****************************98 PP

  == domain 6  score: 2.9 bits;  conditional E-value: 0.16
                 HHHHHHHHHHHTT-HHHHHH CS
       TPR_1   3 alynlGnayfklgkydeAle 22 
                 a +++++++++  +y+ Al 
  KOO23795.1 265 ARFQKAQVLLSTDQYELALS 284
                 77899*************96 PP

  == domain 7  score: 25.9 bits;  conditional E-value: 9e-09
                 HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH CS
       TPR_1   3 alynlGnayfklgkydeAleyyekALelnPnn 34 
                 +++ lG +y klg+  +Al+y  +AL l P++
  KOO23795.1 299 VYFVLGKVYKKLGDQSKALQYLTRALDLSPKD 330
                 6999**************************86 PP

>> TPR_2  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.3       6.9   4.4e+03       3      18 ..      25      40 ..      23      40 .. 0.82
   2 !   13.0   0.0   0.00013     0.083       4      33 ..      62      91 ..      60      92 .. 0.92
   3 !   19.3   0.0   1.3e-06   0.00084       1      33 [.     127     159 ..     127     160 .. 0.94
   4 !   16.0   0.3   1.5e-05    0.0096       1      33 [.     161     193 ..     161     194 .. 0.90
   5 !   25.8   0.2   1.1e-08     7e-06       2      32 ..     196     226 ..     195     226 .. 0.97
   6 !   13.5   0.0   9.4e-05      0.06       3      34 .]     231     262 ..     229     262 .. 0.96
   7 !    9.9   0.0    0.0013      0.85       3      33 ..     265     295 ..     263     296 .. 0.92
   8 !   25.0   0.0   1.9e-08   1.2e-05       3      34 .]     299     330 ..     297     330 .. 0.95

  Alignments for each domain:
  == domain 1  score: -1.7 bits;  conditional E-value: 6.9
       TPR_2  3 alynlGlayyklgdye 18
                +l +l+  y++l +y+
  KOO23795.1 25 LLRQLASGYRALCQYK 40
                5788999999999995 PP

  == domain 2  score: 13.0 bits;  conditional E-value: 0.00013
       TPR_2  4 lynlGlayyklgdyeeAleafekAleldPn 33
                l++ G+a++++ +y eAl+afe A  l+P+
  KOO23795.1 62 LNQVGRAHFEMVQYTEALRAFEHAQLLEPH 91
                7889**********************9996 PP

  == domain 3  score: 19.3 bits;  conditional E-value: 1.3e-06
       TPR_2   1 aealynlGlayyklgdyeeAleafekAleldPn 33 
                 a+a++  G++   +++++ Al++f++A++l P+
  KOO23795.1 127 AYACCVVGNCFSLQKEHDTALKFFQRAIQLQPD 159
                 6788999*************************8 PP

  == domain 4  score: 16.0 bits;  conditional E-value: 1.5e-05
       TPR_2   1 aealynlGlayyklgdyeeAleafekAleldPn 33 
                 a+a+   G  y +++d+e+A ++++ A+++d++
  KOO23795.1 161 AYAYTLSGHEYSANDDFEKAMACYRSAIRIDER 193
                 5788888999********************986 PP

  == domain 5  score: 25.8 bits;  conditional E-value: 1.1e-08
       TPR_2   2 ealynlGlayyklgdyeeAleafekAleldP 32 
                  a+y lG++y+++ +++  +++++kAl+++P
  KOO23795.1 196 NAWYGLGNIYFRQEKFDFSEHHLKKALAINP 226
                 59****************************9 PP

  == domain 6  score: 13.5 bits;  conditional E-value: 9.4e-05
       TPR_2   3 alynlGlayyklgdyeeAleafekAleldPnn 34 
                 ++++lG+a+  +++  +Ale +  A+++dP+n
  KOO23795.1 231 LYCYLGMALHSNQKTPQALEMLSSAIQIDPKN 262
                 699***************************97 PP

  == domain 7  score: 9.9 bits;  conditional E-value: 0.0013
       TPR_2   3 alynlGlayyklgdyeeAleafekAleldPn 33 
                 a ++ +++++  ++ye Al  +++ +e +P+
  KOO23795.1 265 ARFQKAQVLLSTDQYELALSELKQLVEMAPK 295
                 67999***********************996 PP

  == domain 8  score: 25.0 bits;  conditional E-value: 1.9e-08
       TPR_2   3 alynlGlayyklgdyeeAleafekAleldPnn 34 
                 +++ lG++y klgd  +Al+++ +Al l P++
  KOO23795.1 299 VYFVLGKVYKKLGDQSKALQYLTRALDLSPKD 330
                 799***************************86 PP

>> TPR_8  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.1   0.0     0.011         7       4      32 ..      62      90 ..      61      92 .. 0.91
   2 !   13.3   0.0   0.00011     0.073       2      33 ..     128     159 ..     127     160 .. 0.94
   3 !   22.3   0.2   1.5e-07   9.5e-05       2      33 ..     162     193 ..     161     194 .. 0.93
   4 !   14.9   0.0   3.4e-05     0.022       2      32 ..     196     226 ..     195     226 .. 0.96
   5 ?    7.0   0.0     0.012       7.8       2      34 .]     230     262 ..     229     262 .. 0.93
   6 !   12.9   0.1   0.00016       0.1       4      33 ..     266     295 ..     264     296 .. 0.94
   7 !   27.3   0.0   3.7e-09   2.4e-06       3      34 .]     299     330 ..     297     330 .. 0.95

  Alignments for each domain:
  == domain 1  score: 7.1 bits;  conditional E-value: 0.011
                HHHHHHHHHHTT-HHHHHHHHHHHHHHHH CS
       TPR_8  4 yynlgsiylklgdyeeAkeyyekaleldp 32
                +++ g++++++ +y eA  ++e+a  l+p
  KOO23795.1 62 LNQVGRAHFEMVQYTEALRAFEHAQLLEP 90
                6889********************99988 PP

  == domain 2  score: 13.3 bits;  conditional E-value: 0.00011
                 CHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH CS
       TPR_8   2 eayynlgsiylklgdyeeAkeyyekaleldpd 33 
                  a++  g++ + +++++ A +++++a++l+pd
  KOO23795.1 128 YACCVVGNCFSLQKEHDTALKFFQRAIQLQPD 159
                 689999*************************8 PP

  == domain 3  score: 22.3 bits;  conditional E-value: 1.5e-07
                 CHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH CS
       TPR_8   2 eayynlgsiylklgdyeeAkeyyekaleldpd 33 
                  ay + g+ y+   d+e+A+++y+ a+++d+ 
  KOO23795.1 162 YAYTLSGHEYSANDDFEKAMACYRSAIRIDER 193
                 699**************************986 PP

  == domain 4  score: 14.9 bits;  conditional E-value: 3.4e-05
                 CHHHHHHHHHHHTT-HHHHHHHHHHHHHHHH CS
       TPR_8   2 eayynlgsiylklgdyeeAkeyyekaleldp 32 
                  a+y lg+iy+ +++++ ++  ++kal ++p
  KOO23795.1 196 NAWYGLGNIYFRQEKFDFSEHHLKKALAINP 226
                 69***************************98 PP

  == domain 5  score: 7.0 bits;  conditional E-value: 0.012
                 CHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH. CS
       TPR_8   2 eayynlgsiylklgdyeeAkeyyekaleldpdn 34 
                 ++y+ lg+++++ ++  +A e +  a+++dp+n
  KOO23795.1 230 PLYCYLGMALHSNQKTPQALEMLSSAIQIDPKN 262
                 67888**************************97 PP

  == domain 6  score: 12.9 bits;  conditional E-value: 0.00016
                 HHHHHHHHHHTT-HHHHHHHHHHHHHHHHH CS
       TPR_8   4 yynlgsiylklgdyeeAkeyyekaleldpd 33 
                  +++++++l++ +ye A + +++ +e++p+
  KOO23795.1 266 RFQKAQVLLSTDQYELALSELKQLVEMAPK 295
                 689**************************8 PP

  == domain 7  score: 27.3 bits;  conditional E-value: 3.7e-09
                 HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH. CS
       TPR_8   3 ayynlgsiylklgdyeeAkeyyekaleldpdn 34 
                 +y+ lg++y+klgd  +A +y+ +al+l+p++
  KOO23795.1 299 VYFVLGKVYKKLGDQSKALQYLTRALDLSPKD 330
                 8*****************************96 PP

>> TPR_11  TPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.1   0.0      0.49   3.1e+02       1      20 [.      66      85 ..      66      90 .. 0.84
   2 !   16.5   0.0     8e-06    0.0051       6      32 ..     139     165 ..     134     169 .. 0.85
   3 !   33.0   0.2   5.3e-11   3.4e-08       1      41 [.     168     208 ..     168     209 .. 0.96
   4 !    6.9   0.1    0.0075       4.8      16      41 ..     217     242 ..     216     243 .. 0.91
   5 !   21.9   0.0   1.6e-07    0.0001       2      39 ..     237     274 ..     236     277 .. 0.91
   6 !   15.2   0.0     2e-05     0.013       3      42 .]     272     311 ..     270     311 .. 0.93
   7 !   14.4   0.2   3.6e-05     0.023       1      28 [.     304     331 ..     304     332 .. 0.97

  Alignments for each domain:
  == domain 1  score: 1.1 bits;  conditional E-value: 0.49
      TPR_11  1 GdayyeqGkyeeAieaYkkA 20
                G+a +e  +y+eA+ a++ A
  KOO23795.1 66 GRAHFEMVQYTEALRAFEHA 85
                78889999******988765 PP

  == domain 2  score: 16.5 bits;  conditional E-value: 8e-06
      TPR_11   6 eqGkyeeAieaYkkAlkldPdnaeayy 32 
                  q + + A++ +++A++l Pd+a ay 
  KOO23795.1 139 LQKEHDTALKFFQRAIQLQPDFAYAYT 165
                 57899*********************6 PP

  == domain 3  score: 33.0 bits;  conditional E-value: 5.3e-11
      TPR_11   1 GdayyeqGkyeeAieaYkkAlkldPdnaeayynLGlayykq 41 
                 G++y +  ++e+A+++Y+ A+++d+   +a+y+LG++y++q
  KOO23795.1 168 GHEYSANDDFEKAMACYRSAIRIDERHYNAWYGLGNIYFRQ 208
                 88999999*******************************98 PP

  == domain 4  score: 6.9 bits;  conditional E-value: 0.0075
      TPR_11  16 aYkkAlkldPdnaeayynLGlayykq 41 
                 ++kkAl+++P +  +y+ LG a++ +
  KOO23795.1 217 HLKKALAINPCSSPLYCYLGMALHSN 242
                 589*****************999976 PP

  == domain 5  score: 21.9 bits;  conditional E-value: 1.6e-07
      TPR_11   2 dayyeqGkyeeAieaYkkAlkldPdnaeayynLGlayy 39 
                  a+++ +k ++A+e ++ A+++dP+n+ a +  +++++
  KOO23795.1 237 MALHSNQKTPQALEMLSSAIQIDPKNPLARFQKAQVLL 274
                 58999**************************9999875 PP

  == domain 6  score: 15.2 bits;  conditional E-value: 2e-05
      TPR_11   3 ayyeqGkyeeAieaYkkAlkldPdnaeayynLGlayykqG 42 
                 ++ +  +ye A+ ++k+ ++  P+  ++y+ LG++y k+G
  KOO23795.1 272 VLLSTDQYELALSELKQLVEMAPKEGSVYFVLGKVYKKLG 311
                 5667789*******************************99 PP

  == domain 7  score: 14.4 bits;  conditional E-value: 3.6e-05
      TPR_11   1 GdayyeqGkyeeAieaYkkAlkldPdna 28 
                 G++y ++G+  +A++ + +Al+l+P++a
  KOO23795.1 304 GKVYKKLGDQSKALQYLTRALDLSPKDA 331
                 89************************98 PP

>> TPR_12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.8   0.3   8.6e-05     0.055      27      71 ..      42      85 ..      20      86 .. 0.81
   2 !   19.5   0.3   1.4e-06   0.00088       9      76 ..     133     192 ..     126     193 .. 0.93
   3 !   21.6   0.0   3.1e-07    0.0002       4      76 ..     196     260 ..     195     261 .. 0.91
   4 !   13.3   0.0   0.00012     0.079       6      76 ..     232     294 ..     226     295 .. 0.92
   5 !   28.3   0.1   2.4e-09   1.6e-06       9      76 ..     269     328 ..     262     329 .. 0.92

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 8.6e-05
      TPR_12 27 ekaleiarrllGpdhpltattlrnLgrlyralgryeeAlelleea 71
                + a+ i+r l  p  ++t ++l+  gr+++++ +y eAl+++e+a
  KOO23795.1 42 QDAVVIFRGL-APRQYNTGWVLNQVGRAHFEMVQYTEALRAFEHA 85
                5566666665.57888***************************98 PP

  == domain 2  score: 19.5 bits;  conditional E-value: 1.4e-06
      TPR_12   9 laavlrrlgrydeAlellekaleiarrllGpdhpltattlrnLgrlyralgryeeAlelleealaiae 76 
                 ++++   ++++d Al+++++a++++     pd    a ++   g  y+a +++e+A + ++ a++i+e
  KOO23795.1 133 VGNCFSLQKEHDTALKFFQRAIQLQ-----PD---FAYAYTLSGHEYSANDDFEKAMACYRSAIRIDE 192
                 589999*******************.....98...4889**************************998 PP

  == domain 3  score: 21.6 bits;  conditional E-value: 3.1e-07
      TPR_12   4 talnnlaavlrrlgrydeAlellekaleiarrllGpdhpltattlrnLgrlyralgryeeAlelleealaiae 76 
                 +a++ l+++++r++++d ++ +l+kal+i      p   + +  ++ Lg++++   ++ +Ale+l  a++i++
  KOO23795.1 196 NAWYGLGNIYFRQEKFDFSEHHLKKALAIN-----P---CSSPLYCYLGMALHSNQKTPQALEMLSSAIQIDP 260
                 57899***********************99.....4...467789***********************99976 PP

  == domain 4  score: 13.3 bits;  conditional E-value: 0.00012
      TPR_12   6 lnnlaavlrrlgrydeAlellekaleiarrllGpdhpltattlrnLgrlyralgryeeAlelleealaiae 76 
                 +  l+++l+  ++  +Ale+l  a++i      p++pl   +++  +++++ +++ye Al+ l++ +++a+
  KOO23795.1 232 YCYLGMALHSNQKTPQALEMLSSAIQID-----PKNPL---ARFQKAQVLLSTDQYELALSELKQLVEMAP 294
                 4459************************.....*9999...8*************************9987 PP

  == domain 5  score: 28.3 bits;  conditional E-value: 2.4e-09
      TPR_12   9 laavlrrlgrydeAlellekaleiarrllGpdhpltattlrnLgrlyralgryeeAlelleealaiae 76 
                  a+vl+   +y+ Al+ l++ +e+a     p+   + ++++ Lg +y +lg++ +Al++l++al++ +
  KOO23795.1 269 KAQVLLSTDQYELALSELKQLVEMA-----PK---EGSVYFVLGKVYKKLGDQSKALQYLTRALDLSP 328
                 799**********************.....75...899**************************9865 PP

>> TPR_17  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.7   0.0      0.64   4.1e+02       1      33 [.     115     147 ..     115     148 .. 0.90
   2 !   11.8   0.1   0.00038      0.24       1      32 [.     149     180 ..     149     182 .. 0.93
   3 !   11.2   0.0   0.00059      0.38       1      28 [.     183     210 ..     183     212 .. 0.91
   4 !   19.7   0.1   1.2e-06   0.00075       2      34 .]     218     250 ..     217     250 .. 0.94
   5 !   16.2   0.0   1.6e-05      0.01       5      33 ..     255     283 ..     252     284 .. 0.94
   6 !   13.5   0.0   0.00011     0.072       3      34 .]     287     318 ..     285     318 .. 0.91
   7 ?    0.3   0.0       1.8   1.1e+03       2      13 ..     320     331 ..     319     332 .. 0.87

  Alignments for each domain:
  == domain 1  score: 1.7 bits;  conditional E-value: 0.64
      TPR_17   1 lylkaleldPnnadaynnLAelllknGdlmtAr 33 
                 l +kal+ + ++a+a +  +++++ +++++tA+
  KOO23795.1 115 LAKKALDFERTSAYACCVVGNCFSLQKEHDTAL 147
                 5789999999999999999**********9997 PP

  == domain 2  score: 11.8 bits;  conditional E-value: 0.00038
      TPR_17   1 lylkaleldPnnadaynnLAelllknGdlmtA 32 
                 ++++a++l P+ a+ay++ +  ++ n d+++A
  KOO23795.1 149 FFQRAIQLQPDFAYAYTLSGHEYSANDDFEKA 180
                 59************************999988 PP

  == domain 3  score: 11.2 bits;  conditional E-value: 0.00059
      TPR_17   1 lylkaleldPnnadaynnLAelllknGd 28 
                 +y+ a+++d  + +a++ L++++ ++ +
  KOO23795.1 183 CYRSAIRIDERHYNAWYGLGNIYFRQEK 210
                 7999*******************98876 PP

  == domain 4  score: 19.7 bits;  conditional E-value: 1.2e-06
      TPR_17   2 ylkaleldPnnadaynnLAelllknGdlmtArq 34 
                 ++kal+++P ++++y++L+ +l++n ++ +A++
  KOO23795.1 218 LKKALAINPCSSPLYCYLGMALHSNQKTPQALE 250
                 68*************************999975 PP

  == domain 5  score: 16.2 bits;  conditional E-value: 1.6e-05
      TPR_17   5 aleldPnnadaynnLAelllknGdlmtAr 33 
                 a+++dP+n+ a +++A++ll+  +++ A+
  KOO23795.1 255 AIQIDPKNPLARFQKAQVLLSTDQYELAL 283
                 89***********************9986 PP

  == domain 6  score: 13.5 bits;  conditional E-value: 0.00011
      TPR_17   3 lkaleldPnnadaynnLAelllknGdlmtArq 34 
                 ++ +e  P+   +y+ L+++++k+Gd  +A+q
  KOO23795.1 287 KQLVEMAPKEGSVYFVLGKVYKKLGDQSKALQ 318
                 6788999********************99987 PP

  == domain 7  score: 0.3 bits;  conditional E-value: 1.8
      TPR_17   2 ylkaleldPnna 13 
                 +++al+l P++a
  KOO23795.1 320 LTRALDLSPKDA 331
                 689*******98 PP

>> TPR_19  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.2   0.0      0.19   1.2e+02       4      23 ..      72      91 ..      38      95 .. 0.70
   2 !    9.2   0.1    0.0028       1.8       4      28 ..     140     164 ..     139     168 .. 0.90
   3 !   15.0   0.0   4.3e-05     0.027       3      54 ..     173     224 ..     171     232 .. 0.88
   4 !   37.2   0.1   4.9e-12   3.1e-09       4      61 ..     242     300 ..     239     305 .. 0.92
   5 !   21.4   0.9   4.1e-07   0.00026       6      64 ..     278     337 ..     278     341 .. 0.93

  Alignments for each domain:
  == domain 1  score: 3.2 bits;  conditional E-value: 0.19
      TPR_19  4 egdyaeAlalleqalqedpk 23
                + +y+eAl+++e a   +p+
  KOO23795.1 72 MVQYTEALRAFEHAQLLEPH 91
                33666666666666555554 PP

  == domain 2  score: 9.2 bits;  conditional E-value: 0.0028
      TPR_19   4 egdyaeAlalleqalqedpknaear 28 
                 ++ ++ Al+++++a+q  p+ a+a 
  KOO23795.1 140 QKEHDTALKFFQRAIQLQPDFAYAY 164
                 6789****************99886 PP

  == domain 3  score: 15.0 bits;  conditional E-value: 4.3e-05
      TPR_19   3 aegdyaeAlalleqalqedpknaearllLAeallalgqldeAealLdalpee 54 
                 a+ d++ A+a +++a+  d  + +a+++L ++++ +  +d  e  L+++++ 
  KOO23795.1 173 ANDDFEKAMACYRSAIRIDERHYNAWYGLGNIYFRQEKFDFSEHHLKKALAI 224
                 6789*********************************999777777776665 PP

  == domain 4  score: 37.2 bits;  conditional E-value: 4.9e-12
      TPR_19   4 egdyaeAlalleqalqedpknaearllLAeallalgqldeAealLdalpeedpdd.ary 61 
                 +++  +Al++l++a+q dpkn+ ar + A++ll++ q++ A   L++l e++p++ + y
  KOO23795.1 242 NQKTPQALEMLSSAIQIDPKNPLARFQKAQVLLSTDQYELALSELKQLVEMAPKEgSVY 300
                 78889************************************************975655 PP

  == domain 5  score: 21.4 bits;  conditional E-value: 4.1e-07
      TPR_19   6 dyaeAlalleqalqedpknaearllLAeallalgqldeAealLdalpeedpdd.aryasL 64 
                 +y+ Al+ l+q+ + +pk + +   L +++ +lg+  +A + L ++++  p+d ++++s+
  KOO23795.1 278 QYELALSELKQLVEMAPKEGSVYFVLGKVYKKLGDQSKALQYLTRALDLSPKDaQQIKSA 337
                 6889************************************************97776665 PP

>> TPR_16  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.4   0.1     0.093        59       4      31 ..      66      90 ..      63     128 .. 0.80
   2 ?    6.4   0.0     0.022        14      41      66 ..     134     159 ..     132     160 .. 0.93
   3 !   24.4   0.0   5.2e-08   3.3e-05       4      51 ..     168     212 ..     165     226 .. 0.90
   4 ?    6.3   0.0     0.024        15       7      68 .]     205     263 ..     204     263 .. 0.95
   5 !   15.0   0.0   4.5e-05     0.029       4      66 ..     236     295 ..     233     297 .. 0.90
   6 !   27.4   0.0   6.1e-09   3.9e-06       2      68 .]     268     331 ..     267     331 .. 0.95

  Alignments for each domain:
  == domain 1  score: 4.4 bits;  conditional E-value: 0.093
      TPR_16  4 araalragdyddAaaaleaalkrdpssP 31
                +ra+++  +y++A++a+e a  +    P
  KOO23795.1 66 GRAHFEMVQYTEALRAFEHAQLLE---P 90
                89999999*********9887666...5 PP

  == domain 2  score: 6.4 bits;  conditional E-value: 0.022
      TPR_16  41 gdaalrqgrlaeAaalyraalraapd 66 
                 g+++  q++++ A+ ++++a++  pd
  KOO23795.1 134 GNCFSLQKEHDTALKFFQRAIQLQPD 159
                 99******************999886 PP

  == domain 3  score: 24.4 bits;  conditional E-value: 5.2e-08
      TPR_16   4 araalragdyddAaaaleaalkrdpssPdaaeAllllgdaalrqgrla 51 
                 ++++ ++ d+++A a ++ a++ d    +++ A+++lg++++rq  ++
  KOO23795.1 168 GHEYSANDDFEKAMACYRSAIRID---ERHYNAWYGLGNIYFRQEKFD 212
                 78999999****************...****************98765 PP

  == domain 4  score: 6.3 bits;  conditional E-value: 0.024
      TPR_16   7 alragdyddAaaaleaalkrdpssPdaaeAllllgdaalrqgrlaeAaalyraalraapdap 68 
                 ++r+ ++d  ++ l+ al+ +   P     + +lg a+  ++  + A++ + +a++ +p++p
  KOO23795.1 205 YFRQEKFDFSEHHLKKALAIN---PCSSPLYCYLGMALHSNQKTPQALEMLSSAIQIDPKNP 263
                 899******************...99999******************************987 PP

  == domain 5  score: 15.0 bits;  conditional E-value: 4.5e-05
      TPR_16   4 araalragdyddAaaaleaalkrdpssPdaaeAllllgdaalrqgrlaeAaalyraalraapd 66 
                 ++a+  +++ ++A+++l  a+  d   P ++ A++ +++++l    +++A+  ++ +++ ap+
  KOO23795.1 236 GMALHSNQKTPQALEMLSSAIQID---PKNPLARFQKAQVLLSTDQYELALSELKQLVEMAPK 295
                 55666688999*************...88888*******************999999999997 PP

  == domain 6  score: 27.4 bits;  conditional E-value: 6.1e-09
      TPR_16   2 alaraalragdyddAaaaleaalkrdpssPdaaeAllllgdaalrqgrlaeAaalyraalraapdap 68 
                 ++a+ +l   +y+ A+  l+++++++   P     ++ lg ++ ++g+  +A++++ +al+ +p+++
  KOO23795.1 268 QKAQVLLSTDQYELALSELKQLVEMA---PKEGSVYFVLGKVYKKLGDQSKALQYLTRALDLSPKDA 331
                 5789999999****************...***********************************985 PP

>> TPR_14  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.0   0.1       1.6     1e+03       7      29 ..      65      87 ..      60      93 .. 0.75
   2 !   14.3   0.0   8.9e-05     0.057      14      40 ..     140     166 ..     134     169 .. 0.89
   3 !   13.7   0.0   0.00013     0.086       8      42 ..     168     202 ..     163     204 .. 0.89
   4 !    9.3   0.0    0.0036       2.3       2      41 ..     196     235 ..     195     238 .. 0.90
   5 !   17.6   0.0   7.6e-06    0.0048       6      43 ..     234     271 ..     229     273 .. 0.89
   6 !    9.7   0.0    0.0027       1.7       4      43 ..     266     305 ..     265     306 .. 0.93
   7 !   16.8   0.0   1.4e-05     0.009       5      35 ..     301     331 ..     298     335 .. 0.92

  Alignments for each domain:
  == domain 1  score: 1.0 bits;  conditional E-value: 1.6
      TPR_14  7 laeallalGdpdeAiallrrala 29
                 ++a+++  ++ eA+++++ a  
  KOO23795.1 65 VGRAHFEMVQYTEALRAFEHAQL 87
                5677888889999**99998755 PP

  == domain 2  score: 14.3 bits;  conditional E-value: 8.9e-05
      TPR_14  14 lGdpdeAiallrralalaPddaeawll 40 
                 + ++d+A++ ++ra++l+Pd+a a++l
  KOO23795.1 140 QKEHDTALKFFQRAIQLQPDFAYAYTL 166
                 679******************999876 PP

  == domain 3  score: 13.7 bits;  conditional E-value: 0.00013
      TPR_14   8 aeallalGdpdeAiallrralalaPddaeawllla 42 
                 ++ + a++d+++A+a++r a++ +  +  aw+ l+
  KOO23795.1 168 GHEYSANDDFEKAMACYRSAIRIDERHYNAWYGLG 202
                 566899*************************9997 PP

  == domain 4  score: 9.3 bits;  conditional E-value: 0.0036
      TPR_14   2 eallalaeallalGdpdeAiallrralalaPddaeawlll 41 
                 +a++ l+ ++++++++d ++ +l++ala +P +  ++ +l
  KOO23795.1 196 NAWYGLGNIYFRQEKFDFSEHHLKKALAINPCSSPLYCYL 235
                 69*****************************887777666 PP

  == domain 5  score: 17.6 bits;  conditional E-value: 7.6e-06
      TPR_14   6 alaeallalGdpdeAiallrralalaPddaeawlllaq 43 
                  l+ al  ++++ +A+++l  a++ +P+++ a+++ aq
  KOO23795.1 234 YLGMALHSNQKTPQALEMLSSAIQIDPKNPLARFQKAQ 271
                 4677888999999***********************98 PP

  == domain 6  score: 9.7 bits;  conditional E-value: 0.0027
      TPR_14   4 llalaeallalGdpdeAiallrralalaPddaeawlllaq 43 
                 + + a++ll  ++++ A+  l+++++ aP++  +++ l++
  KOO23795.1 266 RFQKAQVLLSTDQYELALSELKQLVEMAPKEGSVYFVLGK 305
                 6788*******************************99987 PP

  == domain 7  score: 16.8 bits;  conditional E-value: 1.4e-05
      TPR_14   5 lalaeallalGdpdeAiallrralalaPdda 35 
                   l++++  lGd  +A+++l ral+l P+da
  KOO23795.1 301 FVLGKVYKKLGDQSKALQYLTRALDLSPKDA 331
                 5799*************************97 PP

>> TPR_9  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.0   0.1     0.043        28      35      62 ..      65      92 ..      62      94 .. 0.91
   2 ?    3.3   0.0      0.15        95       8      31 ..     140     163 ..     135     168 .. 0.86
   3 !   16.0   0.0   1.6e-05      0.01       5      60 ..     171     226 ..     169     231 .. 0.92
   4 !   25.3   0.0   1.9e-08   1.2e-05       4      65 ..     238     299 ..     235     303 .. 0.92
   5 !   11.8   0.0   0.00031       0.2      36      64 ..     304     332 ..     298     338 .. 0.86

  Alignments for each domain:
  == domain 1  score: 5.0 bits;  conditional E-value: 0.043
       TPR_9 35 RGlllaqlGclsaAladLeaylalapda 62
                 G++++++ ++ +Al+++e++  l+p++
  KOO23795.1 65 VGRAHFEMVQYTEALRAFEHAQLLEPHR 92
                699999****************999986 PP

  == domain 2  score: 3.3 bits;  conditional E-value: 0.15
       TPR_9   8 eedweralavverllllaPddpee 31 
                 +++++ al+  +r ++l+Pd ++ 
  KOO23795.1 140 QKEHDTALKFFQRAIQLQPDFAYA 163
                 578999*************98876 PP

  == domain 3  score: 16.0 bits;  conditional E-value: 1.6e-05
       TPR_9   5 aireedweralavverllllaPddpeerrdRGlllaqlGclsaAladLeaylalap 60 
                 +  ++d+e+a+a++ + + ++ ++   ++  G ++++++ +      L  +la++p
  KOO23795.1 171 YSANDDFEKAMACYRSAIRIDERHYNAWYGLGNIYFRQEKFDFSEHHLKKALAINP 226
                 6789************************************9999999999988887 PP

  == domain 4  score: 25.3 bits;  conditional E-value: 1.9e-08
       TPR_9   4 iaireedweralavverllllaPddpeerrdRGlllaqlGclsaAladLeaylalapdapda 65 
                 ++ ++++ ++al+++ + ++++P+ p  r+  +++l   ++++ Al +L + +++ap+   +
  KOO23795.1 238 ALHSNQKTPQALEMLSSAIQIDPKNPLARFQKAQVLLSTDQYELALSELKQLVEMAPKEGSV 299
                 5678999**************************************************87665 PP

  == domain 5  score: 11.8 bits;  conditional E-value: 0.00031
       TPR_9  36 GlllaqlGclsaAladLeaylalapdapd 64 
                 G ++ +lG+ s+Al+ L ++l+l+p++++
  KOO23795.1 304 GKVYKKLGDQSKALQYLTRALDLSPKDAQ 332
                 77999********************5543 PP

>> TPR_7  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.2       5.5   3.5e+03       2      16 ..      26      40 ..      25      40 .. 0.83
   2 ?    5.1   0.0     0.041        26       2      27 ..      62      85 ..      61      92 .. 0.86
   3 ?    6.7   0.0     0.013       8.3       2      28 ..     130     156 ..     129     161 .. 0.81
   4 ?    6.1   0.1      0.02        13       9      32 ..     171     192 ..     163     196 .. 0.80
   5 !   10.6   0.0   0.00072      0.46       1      28 [.     197     224 ..     197     229 .. 0.92
   6 ?    1.5   0.0      0.58   3.7e+02       2      22 ..     232     252 ..     231     263 .. 0.85
   7 ?   -0.1   0.1       1.9   1.2e+03       6      32 ..     270     296 ..     267     300 .. 0.76
   8 !   18.6   0.0   2.1e-06    0.0013       2      34 ..     300     330 ..     299     332 .. 0.88

  Alignments for each domain:
  == domain 1  score: -1.5 bits;  conditional E-value: 5.5
       TPR_7  2 LlnLarlysrlGdye 16
                L +La+ y++l +y+
  KOO23795.1 26 LRQLASGYRALCQYK 40
                5689999**999985 PP

  == domain 2  score: 5.1 bits;  conditional E-value: 0.041
       TPR_7  2 LlnLarlysrlGdyeeAielyeqsLa 27
                L++ +r+++++ +y eA++ +e   a
  KOO23795.1 62 LNQVGRAHFEMVQYTEALRAFEH--A 85
                8899******************9..4 PP

  == domain 3  score: 6.7 bits;  conditional E-value: 0.013
       TPR_7   2 LlnLarlysrlGdyeeAielyeqsLal 28 
                 ++  ++++s + ++++A+++++++++l
  KOO23795.1 130 CCVVGNCFSLQKEHDTALKFFQRAIQL 156
                 666799999**************5444 PP

  == domain 4  score: 6.1 bits;  conditional E-value: 0.02
       TPR_7   9 ysrlGdyeeAielyeqsLaltkdp 32 
                 ys+  d+e+A  +y+   a++ d+
  KOO23795.1 171 YSANDDFEKAMACYRS--AIRIDE 192
                 77788***********..665444 PP

  == domain 5  score: 10.6 bits;  conditional E-value: 0.00072
       TPR_7   1 aLlnLarlysrlGdyeeAielyeqsLal 28 
                 a++ L+++y+r+ +++  + +++++La+
  KOO23795.1 197 AWYGLGNIYFRQEKFDFSEHHLKKALAI 224
                 6789********************8876 PP

  == domain 6  score: 1.5 bits;  conditional E-value: 0.58
       TPR_7   2 LlnLarlysrlGdyeeAiely 22 
                 +++L+ + ++ +++ +A+e +
  KOO23795.1 232 YCYLGMALHSNQKTPQALEML 252
                 89***************9976 PP

  == domain 7  score: -0.1 bits;  conditional E-value: 1.9
       TPR_7   6 arlysrlGdyeeAielyeqsLaltkdp 32 
                 a++  +  +ye A++ ++q+ +++  +
  KOO23795.1 270 AQVLLSTDQYELALSELKQLVEMAPKE 296
                 677788889999999999955777655 PP

  == domain 8  score: 18.6 bits;  conditional E-value: 2.1e-06
       TPR_7   2 LlnLarlysrlGdyeeAielyeqsLaltkdped 34 
                 ++ L+ +y +lGd ++A++++++  al+ +p d
  KOO23795.1 300 YFVLGKVYKKLGDQSKALQYLTR--ALDLSPKD 330
                 6679*******************..88888876 PP

>> TPR_6  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.2   0.0      0.27   1.7e+02       6      24 ..      65      83 ..      64      85 .. 0.87
   2 !   11.0   0.0   0.00087      0.56       7      32 ..     134     159 ..     133     159 .. 0.92
   3 ?    3.2   0.0      0.27   1.7e+02      12      28 ..     173     189 ..     162     191 .. 0.81
   4 ?    1.2   0.0       1.1   7.2e+02       2      14 ..     197     209 ..     196     215 .. 0.85
   5 !    7.8   0.0    0.0092       5.9       5      32 ..     234     261 ..     233     262 .. 0.89
   6 ?    5.3   0.2     0.056        36       2      31 ..     265     294 ..     264     296 .. 0.90
   7 !   14.5   0.0   6.5e-05     0.042       3      32 ..     300     329 ..     298     330 .. 0.91

  Alignments for each domain:
  == domain 1  score: 3.2 bits;  conditional E-value: 0.27
                HHHHHHHHHHHHHHHHHHH CS
       TPR_6  6 lalsyrklgdtdkAleale 24
                 +++++++ ++++Al+a+e
  KOO23795.1 65 VGRAHFEMVQYTEALRAFE 83
                5999**955********98 PP

  == domain 2  score: 11.0 bits;  conditional E-value: 0.00087
                 HHHHHHHHHHHHHHHHHHHHHHH-TT CS
       TPR_6   7 alsyrklgdtdkAlealerlikeYPd 32 
                 + ++  ++++d+Al+ ++r i+  Pd
  KOO23795.1 134 GNCFSLQKEHDTALKFFQRAIQLQPD 159
                 67888899**************9998 PP

  == domain 3  score: 3.2 bits;  conditional E-value: 0.27
                 HHHHHHHHHHHHHHHHH CS
       TPR_6  12 klgdtdkAlealerlik 28 
                 + +d +kA++ +++ i+
  KOO23795.1 173 ANDDFEKAMACYRSAIR 189
                 45799********9986 PP

  == domain 4  score: 1.2 bits;  conditional E-value: 1.1
                 HHHHHHHHHHHHH CS
       TPR_6   2 Alyklalsyrklg 14 
                 A y l+  y+++ 
  KOO23795.1 197 AWYGLGNIYFRQE 209
                 89********983 PP

  == domain 5  score: 7.8 bits;  conditional E-value: 0.0092
                 HHHHHHHHHHHHHHHHHHHHHHHHH-TT CS
       TPR_6   5 klalsyrklgdtdkAlealerlikeYPd 32 
                 +l++++ + ++t +Ale+l + i+  P+
  KOO23795.1 234 YLGMALHSNQKTPQALEMLSSAIQIDPK 261
                 6899999955**************9997 PP

  == domain 6  score: 5.3 bits;  conditional E-value: 0.056
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHH-T CS
       TPR_6   2 AlyklalsyrklgdtdkAlealerlikeYP 31 
                 A ++ a+ ++++++++ Al  l++l++  P
  KOO23795.1 265 ARFQKAQVLLSTDQYELALSELKQLVEMAP 294
                 7899999999999************99777 PP

  == domain 7  score: 14.5 bits;  conditional E-value: 6.5e-05
                 HHHHHHHHHHHHHHHHHHHHHHHHHHH-TT CS
       TPR_6   3 lyklalsyrklgdtdkAlealerlikeYPd 32 
                 ++ l++ y+klgd +kAl++l r ++  P+
  KOO23795.1 300 YFVLGKVYKKLGDQSKALQYLTRALDLSPK 329
                 6779*********************99886 PP

>> ANAPC3  Anaphase-promoting complex, cyclosome, subunit 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.2   0.0     0.077        49      30      58 ..      66      94 ..      38      96 .. 0.75
   2 !    8.3   0.3    0.0041       2.6      11      60 ..     115     164 ..     111     169 .. 0.82
   3 !   19.8   1.6   1.1e-06   0.00067       2      81 ..     140     220 ..     139     221 .. 0.90
   4 !   21.1   0.1   4.1e-07   0.00026       4      80 ..     244     321 ..     241     323 .. 0.89
   5 ?    5.0   0.0     0.046        29      26      56 ..     300     331 ..     287     348 .. 0.81

  Alignments for each domain:
  == domain 1  score: 4.2 bits;  conditional E-value: 0.077
                HHHHHHTT-HHHHHHHHHCTSHHHC-HHH CS
      ANAPC3 30 AlclylngqykrAyellrkaklnskslgc 58
                + +++++ qy++A++ ++ a+l + +  c
  KOO23795.1 66 GRAHFEMVQYTEALRAFEHAQLLEPHRLC 94
                66788888888888888888777776655 PP

  == domain 2  score: 8.3 bits;  conditional E-value: 0.0041
                 HHHHHH.HHH--HHHHHHHHHHHHHTT-HHHHHHHHHCTSHHHC-HHHHH CS
      ANAPC3  11 laerllaaetespedayllAlclylngqykrAyellrkaklnskslgcry 60 
                 la ++l  e+ s+++    + c+ l++++++A++++++a +   + +++y
  KOO23795.1 115 LAKKALDFERTSAYACCVVGNCFSLQKEHDTALKFFQRAIQLQPDFAYAY 164
                 6778888889999999999********************55555556665 PP

  == domain 3  score: 19.8 bits;  conditional E-value: 1.1e-06
                 TT-HHHHHHHHHHHH.HHH--HHHHHHHHHHHHHTT-HHHHHHHHHCT.SHHHC-HHHHHHHHHHHHHTT-HHHHHHHH-S CS
      ANAPC3   2 qnnyknAiflaerllaaetespedayllAlclylngqykrAyellrka.klnskslgcrylfAqcllkLkkyeeAiaaLek 81 
                 q+ +++A+ ++ r+ + +++ +++  l +  +  n ++++A+  +r+a ++++++ +++y ++  ++ ++k++  + +L+k
  KOO23795.1 140 QKEHDTALKFFQRAIQLQPDFAYAYTLSGHEYSANDDFEKAMACYRSAiRIDERHYNAWYGLGNIYFRQEKFDFSEHHLKK 220
                 789************7777666666666999999999**********************************9988888877 PP

  == domain 4  score: 21.1 bits;  conditional E-value: 4.1e-07
                 -HHHHHHHHHHHH.HHH--HHHHHHHHHHHHHTT-HHHHHHHHHCT.SHHHC-HHHHHHHHHHHHHTT-HHHHHHHH- CS
      ANAPC3   4 nyknAiflaerllaaetespedayllAlclylngqykrAyellrka.klnskslgcrylfAqcllkLkkyeeAiaaLe 80 
                 ++  A+ +++ + + ++++p +++ +A++l+++ qy+ A+  l+++ + ++k   + +++++++ kL+   +A++ L 
  KOO23795.1 244 KTPQALEMLSSAIQIDPKNPLARFQKAQVLLSTDQYELALSELKQLvEMAPKEGSVYFVLGKVYKKLGDQSKALQYLT 321
                 5566777777777799******************************99999999**************9999999885 PP

  == domain 5  score: 5.0 bits;  conditional E-value: 0.046
                 HHHHHHHHHHTT-HHHHHHHHHCT.SHHHC-H CS
      ANAPC3  26 ayllAlclylngqykrAyellrka.klnsksl 56 
                  + l++++ ++g+  +A+++l +a +l +k+ 
  KOO23795.1 300 YFVLGKVYKKLGDQSKALQYLTRAlDLSPKDA 331
                 4669*******************977777665 PP

>> TPR_10  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.1   0.1       1.3   8.4e+02      19      36 ..      20      37 ..      19      48 .. 0.86
   2 ?    5.7   0.0     0.022        14       4      28 ..      61      85 ..      58      85 .. 0.92
   3 ?    3.3   0.0      0.12        78      15      31 ..     140     156 ..     134     157 .. 0.90
   4 ?    6.0   0.2     0.018        11      10      36 ..     169     195 ..     161     197 .. 0.79
   5 ?    6.6   0.0     0.012       7.5       8      31 ..     201     224 ..     200     225 .. 0.96
   6 ?    4.6   0.0     0.048        31       7      31 ..     234     258 ..     231     258 .. 0.89
   7 ?    6.5   0.0     0.012       7.7       8      31 ..     303     326 ..     302     327 .. 0.93

  Alignments for each domain:
  == domain 1  score: 0.1 bits;  conditional E-value: 1.3
      TPR_10 19 deAealleealairrrll 36
                +eA+ ll++  + +r+l+
  KOO23795.1 20 QEALLLLRQLASGYRALC 37
                899999999999999876 PP

  == domain 2  score: 5.7 bits;  conditional E-value: 0.022
      TPR_10  4 slnNLanalrqrgrydeAealleea 28
                 ln  ++a++++ +y+eA++ +e+a
  KOO23795.1 61 VLNQVGRAHFEMVQYTEALRAFEHA 85
                699*******************987 PP

  == domain 3  score: 3.3 bits;  conditional E-value: 0.12
      TPR_10  15 rgrydeAealleealai 31 
                 ++++d A++++++a+++
  KOO23795.1 140 QKEHDTALKFFQRAIQL 156
                 899************97 PP

  == domain 4  score: 6.0 bits;  conditional E-value: 0.018
      TPR_10  10 nalrqrgrydeAealleealairrrll 36 
                 + +++  ++++A+a ++ a++i +r +
  KOO23795.1 169 HEYSANDDFEKAMACYRSAIRIDERHY 195
                 558888899999999999998887765 PP

  == domain 5  score: 6.6 bits;  conditional E-value: 0.012
      TPR_10   8 LanalrqrgrydeAealleealai 31 
                 L+n+++++ ++d +e +l++alai
  KOO23795.1 201 LGNIYFRQEKFDFSEHHLKKALAI 224
                 9*********************98 PP

  == domain 6  score: 4.6 bits;  conditional E-value: 0.048
      TPR_10   7 NLanalrqrgrydeAealleealai 31 
                  L++al++ ++  +A+++l  a++i
  KOO23795.1 234 YLGMALHSNQKTPQALEMLSSAIQI 258
                 69****************9888876 PP

  == domain 7  score: 6.5 bits;  conditional E-value: 0.012
      TPR_10   8 LanalrqrgrydeAealleealai 31 
                 L+ ++ ++g+  +A+++l +al++
  KOO23795.1 303 LGKVYKKLGDQSKALQYLTRALDL 326
                 899******************975 PP

>> ChAPs  ChAPs (Chs5p-Arf1p-binding proteins)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.6   0.0    0.0025       1.6     207     290 ..     100     183 ..      54     188 .. 0.74
   2 ?    1.8   0.0      0.15        93     251     285 ..     178     212 ..     173     229 .. 0.86
   3 !   24.0   0.2   2.8e-08   1.8e-05     218     292 ..     247     321 ..     237     348 .. 0.77

  Alignments for each domain:
  == domain 1  score: 7.6 bits;  conditional E-value: 0.0025
                 HHHHHHTT-HHHHHHHHHHHH-SSS-HHHHHHHHHHHHHHSS--HHHHHHHHHHHHH-TT-HHHHHHHHHHHHHTT-HHHHHHH CS
       ChAPs 207 arvllladeEvdavkllneeleeeekdaelLllqaefllskkkeelAlevakravksaPsefktWalLvkvYikledienALlt 290
                 + +l    +Ev   +l +++l+ e+++a   ++  +    +k+++ Al+  +ra+++ P     ++l  + Y + +d+e+A+  
  KOO23795.1 100 STILWHLKREVALCHLAKKALDFERTSAYACCVVGNCFSLQKEHDTALKFFQRAIQLQPDFAYAYTLSGHEYSANDDFEKAMAC 183
                 4566778899999999999999888886555555544444556689*************887888888899*********9865 PP

  == domain 2  score: 1.8 bits;  conditional E-value: 0.15
                 HHHHHHHHHHHHH-TT-HHHHHHHHHHHHHTT-HH CS
       ChAPs 251 elAlevakravksaPsefktWalLvkvYikledie 285
                 e A+++ ++a+++    ++ W+ L ++Y ++e ++
  KOO23795.1 178 EKAMACYRSAIRIDERHYNAWYGLGNIYFRQEKFD 212
                 668999999*********************99876 PP

  == domain 3  score: 24.0 bits;  conditional E-value: 2.8e-08
                 HHHHHHHHHH-SSS-HHHHHHHHHHHHHHSS--HHHHHHHHHHHHH-TT-HHHHHHHHHHHHHTT-HHHHHHHHH CS
       ChAPs 218 davkllneeleeeekdaelLllqaefllskkkeelAlevakravksaPsefktWalLvkvYikledienALltLN 292
                 +a+++l ++++ ++k+      +a+ lls +++elAl+  k+ v++aP e + +++L kvY kl+d ++AL  L 
  KOO23795.1 247 QALEMLSSAIQIDPKNPLARFQKAQVLLSTDQYELALSELKQLVEMAPKEGSVYFVLGKVYKKLGDQSKALQYLT 321
                 56666666666666654444567999*********************************************9885 PP

>> TPR_15  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.4   0.1     0.057        36     146     182 ..     127     160 ..     106     198 .. 0.67
   2 !   11.5   0.1    0.0002      0.13     156     274 ..     171     289 ..     161     294 .. 0.82
   3 !   14.0   0.1   3.5e-05     0.022     142     188 ..     293     339 ..     283     350 .. 0.76

  Alignments for each domain:
  == domain 1  score: 3.4 bits;  conditional E-value: 0.057
      TPR_15 146 aafllaraelyrqegqtdaAlrdyreAlalapdssel 182
                 a+   ++++  + + ++d Al+ +++A++l+pd   +
  KOO23795.1 127 AYACCVVGNCFSLQKEHDTALKFFQRAIQLQPD---F 160
                 555555666666677888888888888888887...3 PP

  == domain 2  score: 11.5 bits;  conditional E-value: 0.0002
      TPR_15 156 yrqegqtdaAlrdyreAlalapdsselraallWlliDlgrraeLrellkawkaraesdasLwgplaaAlllLgrpkkALeylrkqakenrkdplwllaY 254
                 y+++++ ++A+ +yr A++ +    ++  +l  ++   ++ +   + lk+  a    +++L+  l+ Al   +++ +ALe l    +  +k+pl +++ 
  KOO23795.1 171 YSANDDFEKAMACYRSAIRIDERHYNAWYGLGNIYFRQEKFDFSEHHLKKALAINPCSSPLYCYLGMALHSNQKTPQALEMLSSAIQIDPKNPLARFQK 269
                 6677778899999999999999988888887555554444444456677777888999***************************************** PP

      TPR_15 255 ADaleqagradeAwrlRrqv 274
                 A +l   ++ + A +  +q+
  KOO23795.1 270 AQVLLSTDQYELALSELKQL 289
                 *************9876665 PP

  == domain 3  score: 14.0 bits;  conditional E-value: 3.5e-05
      TPR_15 142 aeqsaafllaraelyrqegqtdaAlrdyreAlalapdsselraallW 188
                 a ++  ++++++++y++ g++ +Al+ + +Al+l+p++++ ++  + 
  KOO23795.1 293 APKEGSVYFVLGKVYKKLGDQSKALQYLTRALDLSPKDAQQIKSAIL 339
                 447778899999**********************9999876555544 PP

>> Fis1_TPR_C  Fis1 C-terminal tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.6   0.0      0.23   1.5e+02      10      32 ..      68      90 ..      62     107 .. 0.84
   2 !    7.6   0.0    0.0064       4.1      15      40 ..     141     166 ..     139     169 .. 0.89
   3 ?    0.6   0.0      0.92   5.9e+02      19      34 ..     247     262 ..     234     267 .. 0.85
   4 ?    0.4   0.0       1.1     7e+02      16      33 ..     278     295 ..     275     299 .. 0.88
   5 !    8.4   0.1    0.0034       2.2      12      36 ..     308     332 ..     300     340 .. 0.88

  Alignments for each domain:
  == domain 1  score: 2.6 bits;  conditional E-value: 0.23
                HHHHHT-HHHHHHHHHHHHHHTT CS
  Fis1_TPR_C 10 GhyklgeYseArryvdalLeiEP 32
                +h+ + +Y+eA+r  +    +EP
  KOO23795.1 68 AHFEMVQYTEALRAFEHAQLLEP 90
                899999*******9886655555 PP

  == domain 2  score: 7.6 bits;  conditional E-value: 0.0064
                 T-HHHHHHHHHHHHHHTTS-HHHHHH CS
  Fis1_TPR_C  15 geYseArryvdalLeiEPenrQaqsL 40 
                 +e+++A+++ ++ ++++P++  a +L
  KOO23795.1 141 KEHDTALKFFQRAIQLQPDFAYAYTL 166
                 89*****************9877776 PP

  == domain 3  score: 0.6 bits;  conditional E-value: 0.92
                 HHHHHHHHHHHHTTS- CS
  Fis1_TPR_C  19 eArryvdalLeiEPen 34 
                 +A++ +   ++i+P+n
  KOO23795.1 247 QALEMLSSAIQIDPKN 262
                 7999999*******99 PP

  == domain 4  score: 0.4 bits;  conditional E-value: 1.1
                 -HHHHHHHHHHHHHHTTS CS
  Fis1_TPR_C  16 eYseArryvdalLeiEPe 33 
                 +Y+ A+  +++l e+ P+
  KOO23795.1 278 QYELALSELKQLVEMAPK 295
                 7999*******9999986 PP

  == domain 5  score: 8.4 bits;  conditional E-value: 0.0034
                 HHHT-HHHHHHHHHHHHHHTTS-HH CS
  Fis1_TPR_C  12 yklgeYseArryvdalLeiEPenrQ 36 
                  klg+ s+A++y+ + L + P+  Q
  KOO23795.1 308 KKLGDQSKALQYLTRALDLSPKDAQ 332
                 59*******************9877 PP

>> NARP1  NMDA receptor-regulated protein 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.0       2.9   1.9e+03     304     327 ..      60      83 ..      57      86 .. 0.86
   2 ?    5.5   0.1      0.01       6.5     184     258 ..     119     193 ..     101     197 .. 0.88
   3 ?    4.7   0.0     0.019        12     181     236 ..     220     273 ..     203     276 .. 0.77
   4 !   11.9   0.0   0.00012     0.076     204     259 ..     275     330 ..     264     349 .. 0.81

  Alignments for each domain:
  == domain 1  score: -2.6 bits;  conditional E-value: 2.9
                 HHHHHHHHHHHHTT-HHHHHHHHH CS
       NARP1 304 WfetedgeaylrqkklglALKrfh 327
                 W + + g+a+  + ++ +AL+ f+
  KOO23795.1  60 WVLNQVGRAHFEMVQYTEALRAFE 83 
                 88899999***********99886 PP

  == domain 2  score: 5.5 bits;  conditional E-value: 0.01
                 ----SSHHHHHHHHHHHHHHHHT-SHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHCTTT CS
       NARP1 184 ekepesallwvlyflAqhydklgsrekAleyidkaiehtptlvelyltKarilkhaGdlkkAaevmeearklDla 258
                 + ++e +  ++   +   +   ++ + Al++ ++ai+ +p +   y+  ++ +    d++kA+++  +a ++D++
  KOO23795.1 119 ALDFERTSAYACCVVGNCFSLQKEHDTALKFFQRAIQLQPDFAYAYTLSGHEYSANDDFEKAMACYRSAIRIDER 193
                 5566777778888888889999999****************************************9999999975 PP

  == domain 3  score: 4.7 bits;  conditional E-value: 0.019
                 GSS----SSHHHHHHHHHHHHHHHHT-SHHHHHHHHHHHHH-TT-HHHHHHHHHHH CS
       NARP1 181 edsekepesallwvlyflAqhydklgsrekAleyidkaiehtptlvelyltKaril 236
                 +  + +p s+ l+ +  +A h ++  ++ +Ale++++ai+ +p+      +Ka++l
  KOO23795.1 220 KALAINPCSSPLYCYLGMALHSNQ--KTPQALEMLSSAIQIDPKNPLARFQKAQVL 273
                 445667777778888888888764..6779**************999999999875 PP

  == domain 4  score: 11.9 bits;  conditional E-value: 0.00012
                 HHT-SHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHCTTT- CS
       NARP1 204 klgsrekAleyidkaiehtptlvelyltKarilkhaGdlkkAaevmeearklDlaD 259
                  + ++e Al+ + + +e  p+   +y + ++++k+ Gd +kA + + +a  l  +D
  KOO23795.1 275 STDQYELALSELKQLVEMAPKEGSVYFVLGKVYKKLGDQSKALQYLTRALDLSPKD 330
                 56788899999999999999999999999999999999999999988877766655 PP

>> TPR_21  Tetratricopeptide repeat-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.3   0.0     0.045        29     126     175 ..     140     190 ..     133     198 .. 0.78
   2 !   15.6   0.6   1.5e-05    0.0098      89     182 ..     242     333 ..     235     345 .. 0.80

  Alignments for each domain:
  == domain 1  score: 4.3 bits;  conditional E-value: 0.045
      TPR_21 126 ekkydeAlktLeakke..eafaalvaelrGDilvaqgkldeAraaYqaAlaa 175
                 +k++d Alk  +++ +    fa ++  l G  ++a++++++A a Y+ A++ 
  KOO23795.1 140 QKEHDTALKFFQRAIQlqPDFAYAY-TLSGHEYSANDDFEKAMACYRSAIRI 190
                 7899999999977654114555444.699********************975 PP

  == domain 2  score: 15.6 bits;  conditional E-value: 1.5e-05
      TPR_21  89 agdlaaAkaqLewvlekakdeelkalarlRLarvllaekkydeAlktLea.kkeeafaalvaelrGDilvaqgkldeAraaYqaAlaaleekare 182
                 ++++ +A + L+++++  ++   + lar + a+vll +++y+ Al++L++ ++ +  +++v  + G ++ + g++ +A +  ++Al+   ++a++
  KOO23795.1 242 NQKTPQALEMLSSAIQIDPK---NPLARFQKAQVLLSTDQYELALSELKQlVEMAPKEGSVYFVLGKVYKKLGDQSKALQYLTRALDLSPKDAQQ 333
                 55666666777777666655...59***********************8724556678999************************9988887633 PP

>> TPR_20  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.3   0.1       2.1   1.3e+03       3      43 ..     142     182 ..     140     195 .. 0.66
   2 ?    4.3   0.0     0.077        49      10      51 ..     217     258 ..     214     259 .. 0.92
   3 !   18.0   0.4   4.2e-06    0.0027       6      72 ..     247     311 ..     242     326 .. 0.78

  Alignments for each domain:
  == domain 1  score: -0.3 bits;  conditional E-value: 2.1
      TPR_20   3 adapelaeleaalaanpddldarldlAlallaagryeeAle 43 
                 +++  l+ +++a++ +pd   a       + a+ + e+A++
  KOO23795.1 142 EHDTALKFFQRAIQLQPDFAYAYTLSGHEYSANDDFEKAMA 182
                 55666666777777777655555555566777778888886 PP

  == domain 2  score: 4.3 bits;  conditional E-value: 0.077
      TPR_20  10 eleaalaanpddldarldlAlallaagryeeAleqLleilkr 51 
                  l++ala np    + + l  al+++++  +Ale L + ++ 
  KOO23795.1 217 HLKKALAINPCSSPLYCYLGMALHSNQKTPQALEMLSSAIQI 258
                 68999999****************************998886 PP

  == domain 3  score: 18.0 bits;  conditional E-value: 4.2e-06
      TPR_20   6 pelaeleaalaanpddldarldlAlallaagryeeAleqLleilkrdrkweddaarkqllkifealg 72 
                 + l+ l +a++ +p++  ar++ A++ll+  +ye Al++L ++++   k+  +++   l k+ + lg
  KOO23795.1 247 QALEMLSSAIQIDPKNPLARFQKAQVLLSTDQYELALSELKQLVEMAPKE--GSVYFVLGKVYKKLG 311
                 5688999*********************************9999855443..555555555555555 PP

>> Coatomer_E  Coatomer epsilon subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.9   0.0   0.00017      0.11     166     227 ..      26      85 ..      20      98 .. 0.89
   2 ?    1.5   0.0      0.26   1.7e+02     105     160 ..     164     224 ..     123     228 .. 0.73
   3 ?    2.3   0.1      0.14        91      83     131 ..     246     292 ..     227     343 .. 0.65

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 0.00017
                 HHHHHHHHHHHHH-TTHHHHHHHHHHHHHHHS---HHHHHHHHHHHHHTT-HHHHHHHHHHH CS
  Coatomer_E 166 ltQLAqawvklavggekiqdAyyifqelsekykstplllngkAvvslllgryeeAeslLkea 227
                 l QLA+ + +l +   k qdA  if  l+ +  +t  +ln    ++  + +y eA    + a
  KOO23795.1  26 LRQLASGYRALCQ--YKCQDAVVIFRGLAPRQYNTGWVLNQVGRAHFEMVQYTEALRAFEHA 85 
                 6788888877765..79**************************************9988776 PP

  == domain 2  score: 1.5 bits;  conditional E-value: 0.26
                 HHHHHHHHHHTT-HHHHHHHHTT--SHHHHHHHHH.....HHHHTT-HHHHHHHHHHHHHH CS
  Coatomer_E 105 rllaaivflkegdfddalkllkksenLeavAlkvq.....illklhrvdlAekelkkmqdi 160
                  +l++  +  ++df++a+   ++   ++ +  + +     i+ + ++ d+ e++lkk+  i
  KOO23795.1 164 YTLSGHEYSANDDFEKAMACYRSAIRIDERHYNAWyglgnIYFRQEKFDFSEHHLKKALAI 224
                 5667777888888888888888887777777666334444999999999999999998766 PP

  == domain 3  score: 2.3 bits;  conditional E-value: 0.14
                 HHHHHHHHHHHHS----S-HHHHHHHHHHHHHTT-HHHHHHHHTT--SH CS
  Coatomer_E  83 eeilaelkeeladseiesnevlrllaaivflkegdfddalkllkksenL 131
                  ++l+ l+  +  + + +n  +r   a v+l  ++++ al  lk+   +
  KOO23795.1 246 PQALEMLSSAI--QIDPKNPLARFQKAQVLLSTDQYELALSELKQLVEM 292
                 44444444443..333445555666666666666666666655554444 PP

>> TPR_MalT  MalT-like TPR region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.6   1.7   0.00021      0.13     215     310 ..     242     327 ..     111     331 .. 0.69

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 0.00021
    TPR_MalT 215 qgdlaaaerwleaaelpsdddnhflelelrnlarvllalgrydeAlellerLlkaaeelgrvrslieiliLqalalqaqgreeeAlaaLeqALeLA 310
                  +++ +a+++l++a  + d++n + +    + a+vll  ++y+ Al+ l++L++ a ++g v+       ++  +++ +g++ +Al+ L++AL L 
  KOO23795.1 242 NQKTPQALEMLSSAI-QIDPKNPLAR---FQKAQVLLSTDQYELALSELKQLVEMAPKEGSVY------FVLGKVYKKLGDQSKALQYLTRALDLS 327
                 445555555555553.3344444433...23499***************************97......677889******************985 PP

>> FAT  FAT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.4   0.2   0.00021      0.14     249     299 ..     165     208 ..     136     219 .. 0.83
   2 ?    5.6   0.7     0.012       7.7     164     222 ..     246     297 ..     207     350 .. 0.61

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00021
                 CTCCCCCCCCCCCT.S...-SSCCHHHHCCHHCTCCCHSTTCCCCHHHHHC CS
         FAT 249 lkkGewqealqkldwseekieeilqsysaateidpswykawhtwalfnfev 299
                 +++G   +       +++++e+++++y+ a +id + y+aw+ ++  +f++
  KOO23795.1 165 TLSGHEYS-------ANDDFEKAMACYRSAIRIDERHYNAWYGLGNIYFRQ 208
                 55555333.......44559*************************999975 PP

  == domain 2  score: 5.6 bits;  conditional E-value: 0.012
                 CSTTHHCCCCCHCTT.....TT.TSSCCCHHHHHHHCCHHHHHSSCCHHHHCCTSSCCC CS
         FAT 164 slAekaLkelleedpeewlprappevvyaylKylwssgeqkealqkLreftsellekke 222
                  +A ++L+++++ dp      ++p   ++++++l+s+++ + al++L++ ++ ++ k +
  KOO23795.1 246 PQALEMLSSAIQIDP------KNPLARFQKAQVLLSTDQYELALSELKQLVE-MAPKEG 297
                 345566666666666......3445566666666666666666666666665.444433 PP

>> DUF5113  Domain of unknown function (DUF5113)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.3   0.0      0.83   5.3e+02       9      36 ..     126     155 ..     121     162 .. 0.77
   2 !    9.4   0.7    0.0013      0.84       8      47 ..     161     200 ..     156     218 .. 0.89
   3 ?    0.1   0.0      0.94     6e+02      11      36 ..     232     257 ..     228     263 .. 0.88
   4 ?    2.7   0.0      0.15        96       9      37 ..     298     326 ..     267     347 .. 0.91

  Alignments for each domain:
  == domain 1  score: 0.3 bits;  conditional E-value: 0.83
     DUF5113   9 ndYa..nlayylnvegeyeeALeyldsale 36 
                 ++Ya   ++++   ++e+++AL++++ a++
  KOO23795.1 126 SAYAccVVGNCFSLQKEHDTALKFFQRAIQ 155
                 5565113567888999***********997 PP

  == domain 2  score: 9.4 bits;  conditional E-value: 0.0013
     DUF5113   8 andYanlayylnvegeyeeALeyldsaleylNahyekYak 47 
                 a +Y   + ++ +++++e+A+++ +sa+++  +hy+ ++ 
  KOO23795.1 161 AYAYTLSGHEYSANDDFEKAMACYRSAIRIDERHYNAWYG 200
                 67899999****************************9986 PP

  == domain 3  score: 0.1 bits;  conditional E-value: 0.94
     DUF5113  11 YanlayylnvegeyeeALeyldsale 36 
                 Y  l+++l  +++  +ALe+l+sa++
  KOO23795.1 232 YCYLGMALHSNQKTPQALEMLSSAIQ 257
                 778888899999999*********97 PP

  == domain 4  score: 2.7 bits;  conditional E-value: 0.15
     DUF5113   9 ndYanlayylnvegeyeeALeyldsaley 37 
                 + Y  l++ +   g+ ++AL+yl+ al++
  KOO23795.1 298 SVYFVLGKVYKKLGDQSKALQYLTRALDL 326
                 568889999999999**********9975 PP

>> PPTA  Protein prenyltransferase alpha subunit repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.8   0.1     0.039        25       8      20 ..     187     199 ..     185     199 .. 0.90
   2 ?    5.2   0.0     0.029        19       2      15 ..     249     262 ..     248     263 .. 0.92
   3 ?    1.5   0.0      0.41   2.6e+02       2      15 ..     317     330 ..     316     332 .. 0.90

  Alignments for each domain:
  == domain 1  score: 4.8 bits;  conditional E-value: 0.039
                 HHHH-TT-CHHHH CS
        PPTA   8 liekdpkNYsaWn 20 
                 +i+ d ++Y aW+
  KOO23795.1 187 AIRIDERHYNAWY 199
                 8999********7 PP

  == domain 2  score: 5.2 bits;  conditional E-value: 0.029
                 HHHHHHHHHH-TT- CS
        PPTA   2 LeltekliekdpkN 15 
                 Le+ +++i+ dpkN
  KOO23795.1 249 LEMLSSAIQIDPKN 262
                 9999*********9 PP

  == domain 3  score: 1.5 bits;  conditional E-value: 0.41
                 HHHHHHHHHH-TT- CS
        PPTA   2 LeltekliekdpkN 15 
                 L++ + ++++ pk+
  KOO23795.1 317 LQYLTRALDLSPKD 330
                 99**********97 PP

>> BTAD  Bacterial transcriptional activator domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.5   0.2       1.2   7.5e+02      49     119 ..      60      82 ..      25     156 .. 0.67
   2 ?   -1.1   0.0       3.6   2.3e+03      13      33 ..     168     188 ..     161     199 .. 0.79
   3 ?    2.4   0.0       0.3   1.9e+02      83     120 ..     216     253 ..     172     258 .. 0.77
   4 !   10.3   0.0    0.0011      0.69      66     122 ..     267     323 ..     261     333 .. 0.89

  Alignments for each domain:
  == domain 1  score: 0.5 bits;  conditional E-value: 1.2
                 THHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHH CS
        BTAD  49 wleaererleelrlealealaeaelrlGraeealaelealvaehPlrErlhrqlmrAlarsGrqaeALevY 119
                 w+  ++ r + + ++ +eal                                                +++
  KOO23795.1  60 WVLNQVGRAHFEMVQYTEAL------------------------------------------------RAF 82 
                 44444444444444444433................................................333 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 3.6
                 HHHHHHTT-HHHHHHHHHHHH CS
        BTAD  13 graalaagdpeeaaelleaAl 33 
                 g + +a++d+e+a+++++ A+
  KOO23795.1 168 GHEYSANDDFEKAMACYRSAI 188
                 666777888888888888886 PP

  == domain 3  score: 2.4 bits;  conditional E-value: 0.3
                 HHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHH CS
        BTAD  83 aelealvaehPlrErlhrqlmrAlarsGrqaeALevYe 120
                   l++++a +P    l++ l  Al+   ++ +ALe+  
  KOO23795.1 216 HHLKKALAINPCSSPLYCYLGMALHSNQKTPQALEMLS 253
                 6789999999***********************99865 PP

  == domain 4  score: 10.3 bits;  conditional E-value: 0.0011
                 HHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHH CS
        BTAD  66 ealaeaelrlGraeealaelealvaehPlrErlhrqlmrAlarsGrqaeALevYerl 122
                  + a+ +l+  ++e al+el++lv++ P     +  l + + ++G+q++AL++  r+
  KOO23795.1 267 FQKAQVLLSTDQYELALSELKQLVEMAPKEGSVYFVLGKVYKKLGDQSKALQYLTRA 323
                 567788899999***************************************987766 PP

>> DUF2225  Uncharacterized protein conserved in bacteria (DUF2225)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.5   0.1      0.31     2e+02     124     166 ..      58     100 ..      33     157 .. 0.66
   2 ?    2.8   1.0      0.13        83     124     158 ..     160     194 ..     110     257 .. 0.82
   3 ?   10.0   0.1    0.0008      0.52      65     147 ..     243     326 ..     223     343 .. 0.75

  Alignments for each domain:
  == domain 1  score: 1.5 bits;  conditional E-value: 0.31
     DUF2225 124 lAWlyrdkedeekeklflkkAlelykeayekesfpvegideat 166
                 ++W+ ++ +  + e   +++Al+ +++a   e    +g++ ++
  KOO23795.1  58 TGWVLNQVGRAHFEMVQYTEALRAFEHAQLLEPHRLCGMEVHS 100
                 6677777777777777777777777777777766666666554 PP

  == domain 2  score: 2.8 bits;  conditional E-value: 0.13
     DUF2225 124 lAWlyrdkedeekeklflkkAlelykeayekesfp 158
                  A+ y +++ e++ ++  +kA+ +y+ a+  ++++
  KOO23795.1 160 FAYAYTLSGHEYSANDDFEKAMACYRSAIRIDERH 194
                 47778888888888888888888888888777665 PP

  == domain 3  score: 10.0 bits;  conditional E-value: 0.0008
     DUF2225  65 klskeekeklkekiskkwksr..dfskertldeaiesYkLallcyelkkekkskkAklalrlAWlyrdkedeekeklflkkAlel 147
                 + +++  e l++ i+   k+    f ++ ++     +Y Lal   +   e   k + ++  l+ +y++++d+ k +++l++Al+l
  KOO23795.1 243 QKTPQALEMLSSAIQIDPKNPlaRF-QKAQVLLSTDQYELALSELKQLVEMAPKEGSVYFVLGKVYKKLGDQSKALQYLTRALDL 326
                 5555566666666655555444244.45566677899999999999999999999999999999999999999999999999976 PP

>> Sel1  Sel1 repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.8   0.0       1.4     9e+02      25      35 ..     145     155 ..     137     157 .. 0.84
   2 ?   -0.1   0.1       2.7   1.7e+03      22      33 ..     176     187 ..     162     189 .. 0.78
   3 ?    7.4   0.0     0.012       7.7      20      36 ..     308     326 ..     298     327 .. 0.80

  Alignments for each domain:
  == domain 1  score: 0.8 bits;  conditional E-value: 1.4
        Sel1  25 kAiewyekAAe 35 
                  A++++++A +
  KOO23795.1 145 TALKFFQRAIQ 155
                 59*******76 PP

  == domain 2  score: -0.1 bits;  conditional E-value: 2.7
        Sel1  22 DpekAiewyekA 33 
                 D ekA+ +y+ A
  KOO23795.1 176 DFEKAMACYRSA 187
                 789999999988 PP

  == domain 3  score: 7.4 bits;  conditional E-value: 0.012
        Sel1  20 pk..DpekAiewyekAAeq 36 
                 +k  D++kA++++ +A ++
  KOO23795.1 308 KKlgDQSKALQYLTRALDL 326
                 4577************876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (353 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       587  (0.0327403); expected 358.6 (0.02)
Passed bias filter:                      440  (0.0245412); expected 358.6 (0.02)
Passed Vit filter:                        61  (0.00340231); expected 17.9 (0.001)
Passed Fwd filter:                        28  (0.00156172); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              28  [number of targets reported over threshold]
# CPU time: 0.68u 0.24s 00:00:00.92 Elapsed: 00:00:00.48
# Mc/sec: 2208.01
//
Query:       KOO23796.1  [L=481]
Description: hypothetical protein Ctob_002969 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
  ------ inclusion threshold ------
      0.033   14.2   5.1      0.081   13.0   0.0    3.1  3  Baculo_PEP_C   Baculovirus polyhedron envelope protein, PEP, 
        0.1   12.6   1.7       0.57   10.2   0.0    3.0  3  Bcr-Abl_Oligo  Bcr-Abl oncoprotein oligomerisation domain
          5    7.7   8.6          1    9.9   2.2    3.5  3  Rnk_N          Rnk N-terminus


Domain annotation for each model (and alignments):
>> Baculo_PEP_C  Baculovirus polyhedron envelope protein, PEP, C terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.0       1.4   8.4e+03      26      39 ..      90     103 ..      80     124 .. 0.51
   2 ?   13.0   0.0   1.4e-05     0.081       9      80 ..     147     218 ..     136     231 .. 0.89
   3 ?   -1.8   4.2      0.49   2.9e+03      18      87 ..     302     380 ..     280     405 .. 0.53

  Alignments for each domain:
  == domain 1  score: -3.3 bits;  conditional E-value: 1.4
  Baculo_PEP_C  26 rlqnvqilaqlatl 39 
                   + q+v ++a+l+++
    KOO23796.1  90 QRQLVVVSAKLSKA 103
                   23333333333332 PP

  == domain 2  score: 13.0 bits;  conditional E-value: 1.4e-05
  Baculo_PEP_C   9 ggggnqfldLtnvLnairlqnvqilaqlatlldaietqLnalsedlksllaeldtrldtlltnLtdalnalq 80 
                   g g+ + ++Lt  L+ + +   +++a l ++ + +e++L ++++d  ++ a  d+rl  + ++L+ a +++ 
    KOO23796.1 147 GAGSAGVVELTAELQKLGTAHEKVVAGLREDAQGVEERLMEVAADGWAACAMADRRLGRMQSELDGAHAKMR 218
                   678999******************************************************999998877765 PP

  == domain 3  score: -1.8 bits;  conditional E-value: 0.49
  Baculo_PEP_C  18 LtnvLnairlqnvqilaqlatlldaietqLnalsedlksllaeldt..............rldtlltnLtdalnalqdtlrneL 87 
                   L++vL+a+r+   ++   l+t+ld    + ++l+++l++      +              +++   ++L++ +++l  + + +L
    KOO23796.1 302 LNQVLDALRAAADEV-PVLKTALDLQMDENKSLAQQLRDRE----AssvhlrngadreraKFEREKAQLDAVVAELRVEKEMQL 380
                   666666666655554.3333333322222222222222211....011122335555666666666666666666663333333 PP

>> Bcr-Abl_Oligo  Bcr-Abl oncoprotein oligomerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.0   9.6e-05      0.57      21      51 ..     198     228 ..     192     240 .. 0.87
   2 ?   -1.1   0.1      0.33     2e+03      28      69 ..     318     359 ..     280     363 .. 0.63
   3 ?   -1.8   0.2      0.53   3.2e+03      21      46 ..     378     399 ..     355     406 .. 0.56

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 9.6e-05
  Bcr-Abl_Oligo  21 meLdsvedieqeLerCkaslrrLekelneek 51 
                    m  + ++ ++ eL+  +a++rrLe+el++ +
     KOO23796.1 198 MADRRLGRMQSELDGAHAKMRRLEEELARAR 228
                    66677889********************987 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 0.33
  Bcr-Abl_Oligo  28 dieqeLerCkaslrrLekelneekfkviyLqtllakerksyD 69 
                     ++  L+   ++ + L ++l       ++L+    +er  ++
     KOO23796.1 318 VLKTALDLQMDENKSLAQQLRDREASSVHLRNGADRERAKFE 359
                    444445555555566666666665666666666666665555 PP

  == domain 3  score: -1.8 bits;  conditional E-value: 0.53
  Bcr-Abl_Oligo  21 meLdsvedieqeLerCkaslrrLeke 46 
                    m+L+  +  +  L    ++l+rLe  
     KOO23796.1 378 MQLNQEQSQQSSL----DQLKRLEAA 399
                    3333333333333....345555544 PP

>> Rnk_N  Rnk N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.6   0.0       2.7   1.6e+04      24      35 ..     149     160 ..     143     161 .. 0.68
   2 ?    9.9   2.2   0.00017         1      21      41 .]     210     230 ..     197     230 .. 0.79
   3 ?   -3.0   0.1       1.8   1.1e+04      13      24 ..     302     313 ..     300     318 .. 0.66

  Alignments for each domain:
  == domain 1  score: -3.6 bits;  conditional E-value: 2.7
                 SSTTHHHHHHHH CS
       Rnk_N  24 dppaaeaLeaEL 35 
                  ++ + +L aEL
  KOO23796.1 149 GSAGVVELTAEL 160
                 446778999998 PP

  == domain 2  score: 9.9 bits;  conditional E-value: 0.00017
                 TTTSSTTHHHHHHHHHCSEEE CS
       Rnk_N  21 adrdppaaeaLeaELdRAevV 41 
                  d++++  ++Le+EL+RA+ V
  KOO23796.1 210 LDGAHAKMRRLEEELARARAV 230
                 4556678899********865 PP

  == domain 3  score: -3.0 bits;  conditional E-value: 1.8
                 HHHHHHCTTTTS CS
       Rnk_N  13 LeaLldsladrd 24 
                 L + ld+l++++
  KOO23796.1 302 LNQVLDALRAAA 313
                 678888876543 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (481 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1379  (0.0769145); expected 358.6 (0.02)
Passed bias filter:                      483  (0.0269396); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.57u 0.30s 00:00:00.86 Elapsed: 00:00:00.42
# Mc/sec: 3417.53
//
Query:       KOO23797.1  [L=553]
Description: family 31 glycosyl hydrolase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
      3e-29  102.5  10.8    2.1e-28   99.7  10.8    1.9  1  Glyco_hydro_31  Glycosyl hydrolases family 31


Domain annotation for each model (and alignments):
>> Glyco_hydro_31  Glycosyl hydrolases family 31
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   99.7  10.8   1.2e-32   2.1e-28      10     407 ..     130     539 ..     119     546 .. 0.67

  Alignments for each domain:
  == domain 1  score: 99.7 bits;  conditional E-value: 1.2e-32
                     HHHHHHHHHH-------GGGGSEEEE-TT.--SHHHHHHHHHHHHHTT--EEEEEESCGGSBTTCCTB-.TTT..SS.-H.HHHHHHHHHT.T-E CS
                     xxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xx.xx.xxxxxxxxxx.xxx RF
  Glyco_hydro_31  10 evvkqyteltGrpalpPrwalGfhqsryg.ykdeeeveevvdkfreagiPldvivlDidymdkrkdftwdker..Fp.dp.kemvdelhek.gvk 98 
                        +++ +ltG  +++P +a+G + + +  y +e+e ++ +++ ++ ++P+dv  lD+++ +++   ++++ +  ++ +p  +  d++ ++ +  
      KOO23797.1 130 ASRREFIRLTGPCPVLPDYAFGTWFTYWHsY-SEKEAKDDISRWESGNLPIDVWALDMNW-RNTSSDNLNPGQspYHpHPeIGSQDHYYDHpNSS 222
                     55678999****************9999967.****************************.3333444443332233233233333443332333 PP

                     EEEEE-SEE.E.-T...TSHHHHHHHHTTSBECCCCCSTCECTSS.....EEEEB-TTSHHHHHH.HHHHHHHHHCTCT--EEEE-STT....TB CS
                     xxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxxx.....xxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxx....xx RF
  Glyco_hydro_31  99 lvvivdpaiskqee...eyeafdegkekgvflknkdgsykgkwpg.....stafpDftnpearew.wkkelkkflldlgvdglwiDmne....ps 180
                     l +   p +    +   e  af +gk+ + +++        + p      ++  ++ t+pe+  + w+  l++++ + g+  +w D n     p 
      KOO23797.1 223 LFPGDGP-F---GDsftEWFAFLKGKKLRTYFN--------DHPFpvamrNEGGLQ-TSPEEVAFrWQ-GLSSWMER-GLTYWWFDHNWgfsiPP 302
                     3322223.1...112212233333443333333........222211111233333.58888887355.88888755.********766111122 PP

                     .SCCCCHH.HHCCCTSCETTCC....HHHHCCCHHHHHHHHHHHHHHHHTT.....TST-EEEESSEET...............TGGGCTEEE-- CS
                     xxxxxxxx.xxxxxxxxxxxxx....xxxxxxxxxxxxxxxxxxxxxxxxx.....xxxxxxxxxxxxx...............xxxxxxxxxxx RF
  Glyco_hydro_31 181 nfeegsds.eekeaketkaags....hydvhnlygllmakatyeglkekkp.....kkrpfiltRstfa...............GsqryaahWsG 250
                      f + s + +           +     +  +    ++ +  +y+++ + k        +p+ lt+ + +                ++ry++ W+G
      KOO23797.1 303 PFINISVTsG-----------TweglDNAAWGSHVYYSSVEYYDKTVRDKAgdqwyGGKPMALTKFGLPdwrentnpteaaespAQHRYPVWWTG 386
                     2222222222...........111222222222222223333322211111233446677777777777777777777777777*********** PP

                     S-BSSHHHHHHHHHHHHHHHTTT--.SEEEECT-SG.HC.HHHHHHHHHHHHTTSSSEEE--STTSS--SHHHHCHHHHHHHHHHHHHHHHTHHH CS
                     xxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxx.xx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Glyco_hydro_31 251 dnassWeslresipallsfslsGvp.fwgaDigGFe.nt.teelyaRWvqlGafsPffrnHsskdakrqepwafgeeveeaarkaielRyrLlPy 342
                     d       l+  ++ ++ +++ G++ ++ +D gG + ++ t   + RW++  afs ++r+H++    ++ pw ++ ++e+++r +++ Ry+L+P 
      KOO23797.1 387 DG----VPLQGAVQSTVDSGVHGFKtYVHSDCGG-DyRPhTGGDLLRWTAHCAFSTILRFHGD----DHRPWGYDTHTEDVIRSYLNARYKLIPS 472
                     *3....56999************97256667777.33444668889****************9....899************************* PP

                     HHHHHHHHHHH---SEE-HHHH-TT-CCCCC--S-EEETTTEEE----STT..-SEEEEEE-.SSEEE CS
                     xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxx.xxxxx RF
  Glyco_hydro_31 343 lYtlfyeahetglpvvrplflefpedektfdiddqfmfGdsLLvaPvleee..atsvevyLP.ggkWy 407
                     l  + ++a++tg p+v    + +pe ++  + ++q++f ++ LvaP+ +    at ++v++P +  W+
      KOO23797.1 473 LIAAGEHAATTGYPFVTRCDMIWPEHNES-ASNNQYIFLNDTLVAPIWDSAtnATAQSVWIPpARGWM 539
                     ************************87444.469***************88456999******877996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (553 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       198  (0.0110436); expected 358.6 (0.02)
Passed bias filter:                      158  (0.00881254); expected 358.6 (0.02)
Passed Vit filter:                        12  (0.000669307); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.28s 00:00:00.77 Elapsed: 00:00:00.42
# Mc/sec: 3934.93
//
Query:       KOO23798.1  [L=398]
Description: nucleotidyltransferase-like protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.4e-18   66.8   0.1    2.8e-18   65.9   0.1    1.5  1  PAP_assoc     Cid1 family poly A polymerase
     0.0077   16.5   0.0      0.017   15.4   0.0    1.5  1  NTP_transf_2  Nucleotidyltransferase domain
  ------ inclusion threshold ------
       0.13   12.4   0.0       0.23   11.5   0.0    1.5  1  Polbeta       Polymerase beta, Nucleotidyltransferase


Domain annotation for each model (and alignments):
>> PAP_assoc  Cid1 family poly A polymerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.9   0.1   4.7e-22   2.8e-18       1      62 []     311     373 ..     311     373 .. 0.94

  Alignments for each domain:
  == domain 1  score: 65.9 bits;  conditional E-value: 4.7e-22
                 -HHHHHHHHHHHHHHT--TTTEEEECSST-EEEHHHHCGCS-.SSEECESSSSEBEETTCCCC CS
   PAP_assoc   1 sLGeLLigFFeyYgreFdyenvvisirtggiltkkekgwesa.eskernrfllaIeDPfeldn 62 
                 sLG+LLigFF+ Y+reFd+ ++v sirtg +ltk+ k+w ++    + +r+l++ eDPfel++
  KOO23798.1 311 SLGQLLIGFFRRYAREFDFVKSVTSIRTGAFLTKHAKNWDKKeAGFRGDRHLFCMEDPFELTH 373
                 7***************************************998555569************98 PP

>> NTP_transf_2  Nucleotidyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.0   2.8e-06     0.017      13      77 ..     105     195 ..      91     207 .. 0.72

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 2.8e-06
                   TTSEEEEEHHHHCTTSCTTSSEEEEEEESTTCHHH..........................HHHEHHHHHHHHCCCEEECTTEEEEEECEE CS
  NTP_transf_2  13 pvakvvlfGSyarGtalkgSDiDllvvlpeevsre..........................kkeegleklaeiikfleellglevdlvtre 77 
                   p+a +  fGS++ G+a kg D+Dl +   +++ ++                          ++  + +++++i    ++++gl++d+  ++
    KOO23798.1 105 PNATLLQFGSSVSGLASKGADLDLTLMPTDPKHQNealpieeqaqlveliakvmedsgqmaEVHARPKARVPIVALKDSITGLKCDICMCN 195
                   4778888****************97766555444358877777777777777777777777666666777777777777777777776655 PP

>> Polbeta  Polymerase beta, Nucleotidyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   3.9e-05      0.23      19      58 ..     112     151 ..      99     195 .. 0.81

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 3.9e-05
                 EEEEE-S------EEEEEEEESS---HHHHHHHHHHHHHH CS
     Polbeta  19 FGSrakgkareeSDiDlavllkekldleeelelaaeledi 58 
                 FGS ++g a +  D+Dl ++  + ++ +e l ++++ + +
  KOO23798.1 112 FGSSVSGLASKGADLDLTLMPTDPKHQNEALPIEEQAQLV 151
                 **********************996666655555544433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (398 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       539  (0.030063); expected 358.6 (0.02)
Passed bias filter:                      426  (0.0237604); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.48u 0.25s 00:00:00.73 Elapsed: 00:00:00.40
# Mc/sec: 2969.62
//
Query:       KOO23799.1  [L=451]
Description: tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
   3.2e-109  365.0   0.0   3.8e-109  364.8   0.0    1.0  1  tRNA_Me_trans  tRNA methyl transferase
     0.0067   16.1   0.0       0.01   15.5   0.0    1.2  1  Asn_synthase   Asparagine synthase
     0.0084   15.7   0.0      0.013   15.1   0.0    1.3  1  ThiI           Thiamine biosynthesis protein (ThiI)
  ------ inclusion threshold ------
       0.14   11.9   0.0       0.23   11.2   0.0    1.3  1  ATP_bind_3     PP-loop family


Domain annotation for each model (and alignments):
>> tRNA_Me_trans  tRNA methyl transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  364.8   0.0  8.4e-113  3.8e-109       2     356 .]      68     446 ..      67     446 .. 0.95

  Alignments for each domain:
  == domain 1  score: 364.8 bits;  conditional E-value: 8.4e-113
  tRNA_Me_trans   2 kvvvalSgGVDSsvaaallkeqgyevigvflklweeedeeg...keccaeedlkdaervaeklgiplevvdfekeykekvfeefleeyeeGrTPnP 94 
                    +v+v+lSgGVDSsva++ l  +g+ +++++l++w e+++++     c++eed+++ e+v+e+ g+ple v+++key+e+v+ +++ e ++GrTPnP
     KOO23799.1  68 EVAVLLSGGVDSSVALHQLLAAGHRCRAFYLRIWLEDEQAHaarGDCPWEEDWAYCEAVCEQAGVPLEAVSLQKEYQEHVVGYLVAEAAAGRTPNP 163
                    79********************************996555557789************************************************** PP

  tRNA_Me_trans  95 dvlCNkeiKfgallekakeelgadalatGHYarvslee..............eknevellrakdkkkDQsyfLsqlskealekllfPlgeltKeev 176
                    d++CN +iKfg +++++     +  +a+GHYar+  ++               k  vellr++d +kDQ+yfLsql++e+l++++fP+g + K+ev
     KOO23799.1 164 DIMCNSRIKFGVFHDRVGC--HFGHVASGHYARTAPTRstgsratvpfssagGKPMVELLRSADAHKDQTYFLSQLRQEQLSSAIFPIGGMSKPEV 257
                    ****************996..999**********998899*********9998899**************************************** PP

  tRNA_Me_trans 177 rkiAkeaglavaekkdSqgiCfigkrkfkdflkkyleekeGkiieietgevlGeheGllsyTiGqrkGlk..iag...aeeplyVvekdakkntvl 267
                    r+ A++ +l++  +kdSqgiCf+g+ ++ dfl+++l+e++G+iie+etge++G+h+Gl+++T+Gqr+Gl+  +++   a +p++Vv+kd + n ++
     KOO23799.1 258 RAAAHALHLPNRARKDSQGICFLGQLNYDDFLRDHLGEAPGHIIEFETGEIVGTHRGLWYHTVGQRRGLGpvLNNafrAFGPWHVVHKDFEANVLY 353
                    *********************************************************************844444888899*************** PP

  tRNA_Me_trans 268 vgkgedeealaskklrvkelnwlae...elkekealelevkvrhkqelvkakvelked.etvevkldekvravtpGQaavlYkgdevLGggii 356
                     ++++   + a++++r+  +nw+a    ++  +  l+l+vkvrh  ++++a+v l++d    ev+l+e +++++pGQ+a++Y+g+++LG+g+i
     KOO23799.1 354 ATRSYTGADKARNAFRTAGINWVAGhppTVLPGVPLHLQVKVRHGAQTHEATVALHADgYGAEVELAERDKGLAPGQFAAFYDGEVCLGSGVI 446
                    ************************977656667799*******************999678******************************98 PP

>> Asn_synthase  Asparagine synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.0   2.3e-06      0.01      16      74 ..      65     134 ..      63     152 .. 0.63

  Alignments for each domain:
  == domain 1  score: 15.5 bits;  conditional E-value: 2.3e-06
  Asn_synthase  16 advpvGalLSGGlDSSliaa.laarqsk............splktFsigfeekgsdeakyakevaehlgteh 74 
                   a+ +v++lLSGG+DSS+  + l+a+ ++            +++++   +   +  ++ +y ++v+e+ g++ 
    KOO23799.1  65 AEEEVAVLLSGGVDSSVALHqLLAAGHRcrafylriwledEQAHAARGDC--PWEEDWAYCEAVCEQAGVPL 134
                   5789************8665144444433444444444443444444444..66677777777777777664 PP

>> ThiI  Thiamine biosynthesis protein (ThiI)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.0   2.9e-06     0.013       3      36 ..      66      99 ..      64     146 .. 0.87

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 2.9e-06
        ThiI  3 qgkvlaLlSgGiDSpVaaylllkRGcrvvlvhlk 36
                +++v +LlSgG+DS Va + ll  G r  + +l 
  KOO23799.1 66 EEEVAVLLSGGVDSSVALHQLLAAGHRCRAFYLR 99
                578999*******************999998875 PP

>> ATP_bind_3  PP-loop family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0     5e-05      0.23       2      68 ..      69     141 ..      68     159 .. 0.67

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 5e-05
                 EEEE--SCHHHHHHHHHHHHHCTTTTT.EEEEEEEE...-SSS..TCHHHHHHHHHHHHHHTT-EEEEEE--H CS
  ATP_bind_3   2 vlvAvSgGlDSmaLllllaklkkklgi.klvaihvd...hglr..eeskeeaelvkelckklnikleiekvdv 68 
                 v+v +SgG+DS + l+ l    ++     l++   d   h  r     +e+ ++++++c++ +++le  +++ 
  KOO23799.1  69 VAVLLSGGVDSSVALHQLLAAGHRCRAfYLRIWLEDeqaHAARgdCPWEEDWAYCEAVCEQAGVPLEAVSLQK 141
                 56779*****98777666655554444355555544222666632245788899************9999885 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (451 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       281  (0.0156729); expected 358.6 (0.02)
Passed bias filter:                      249  (0.0138881); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.51u 0.25s 00:00:00.76 Elapsed: 00:00:00.44
# Mc/sec: 3056.90
//
Query:       KOO23800.1  [L=328]
Description: bardet-biedl syndrome 5 protein-like protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
   7.8e-139  462.3   0.2   9.4e-139  462.1   0.2    1.0  1  BBL5            Bardet-Biedl syndrome 5 protein
    0.00029   21.0   0.0       0.74    9.9   0.0    2.4  2  Voldacs         Regulator of volume decrease after cellular s
     0.0037   17.6   0.0        1.7    9.0   0.0    2.6  2  PH_TFIIH        TFIIH p62 subunit, N-terminal domain
     0.0061   16.7   0.0       0.23   11.7   0.0    2.3  2  Vps36_ESCRT-II  Vacuolar protein sorting protein 36 Vps36


Domain annotation for each model (and alignments):
>> BBL5  Bardet-Biedl syndrome 5 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  462.1   0.2  2.1e-142  9.4e-139      13     333 .]       5     327 ..       2     327 .. 0.97

  Alignments for each domain:
  == domain 1  score: 462.1 bits;  conditional E-value: 2.1e-142
        BBL5  13 akklklrkgekvlaklesvedtkgnngekGtllvtnlRliWhskkrprvnlsiGyntivkikvkevesklrgktealyilaklkksrfeFiFtnlvkes 111
                 ++kl+++ ge+++++++svedtkgnngekG+l +tnlRl+W++++++r+nlsiGyn++ +i++++++s+lrg+t+aly+++k+++srfeF+Ftnlv++s
  KOO23800.1   5 KRKLAIHAGEFQIDSINSVEDTKGNNGEKGSLAITNLRLVWICHRNSRLNLSIGYNAVLSINIRTANSRLRGNTQALYVMTKYNNSRFEFVFTNLVRQS 103
                 5789999******************************************************************************************** PP

        BBL5 112 srlfttveavlraYessklYRelklrsaiikekeLkllpkEqvvskvegvwnlssdqgnlGtfivtnvRvvWyaelnesfNvSiPylqlksirvreskf 210
                 +rlfttv++v+raY++s+lYR+lklr+aiik+k+L +lp+Eq+++kv gvwnlssdqgnlGtf+++nvRvvW+a+++e+fNvSiPylq++++rvr+skf
  KOO23800.1 104 PRLFTTVQTVYRAYDTSRLYRDLKLRGAIIKNKSLIMLPNEQLYNKVGGVWNLSSDQGNLGTFFISNVRVVWHANQAENFNVSIPYLQMAAVRVRDSKF 202
                 *************************************************************************************************** PP

        BBL5 211 GkalvietsessgeyvlGfrvdPeekLkellkeissLhkvysakPifGveveleekekkeeeees.keedeveieeeeeesdalaaylae.kskeedre 307
                 G alvie +++ g+y+lGfrvdP+e+L+ +++ei+sLh+v++++P+fGv++++eek++  e+ ++ +++d+vei+e+ + +da+a+ylae ++k+edre
  KOO23800.1 203 GPALVIECQQRCGGYILGFRVDPAEQLSAVFQEIQSLHRVFATTPVFGVDFTIEEKSAPLEQLTVsRTTDDVEIDEQATGTDAHASYLAEgHTKREDRE 301
                 ****************************************************99999888776554999*********************8888889** PP

        BBL5 308 pvyseelGLaieklkegvtlqdlwev 333
                  v+ +elGLa+ekl+eg+t+++lw+v
  KOO23800.1 302 IVLAPELGLAMEKLPEGYTVKSLWQV 327
                 ************************97 PP

>> Voldacs  Regulator of volume decrease after cellular swelling
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.9   0.0   0.00016      0.74       1      56 [.      34      89 ..      34     119 .. 0.82
   2 !    8.8   0.0   0.00038       1.7       1      29 [.     164     193 ..     164     214 .. 0.79

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.00016
     Voldacs  1 gdLyvtesrllwvs.ekansgisipypsIalHAiqrdkk.deqeepclyvqldeelde 56
                g L +t+ rl+w++ +++  ++si y++++   i+++++      + lyv+  +++++
  KOO23800.1 34 GSLAITNLRLVWIChRNSRLNLSIGYNAVLSINIRTANSrLRGNTQALYVM--TKYNN 89
                6789**********8667889********9999998887766677888988..44554 PP

  == domain 2  score: 8.8 bits;  conditional E-value: 0.00038
     Voldacs   1 gdLyvtesrllwvs.ekansgisipypsIa 29 
                 g++++ + r++w   +++n ++sipy ++a
  KOO23800.1 164 GTFFISNVRVVWHAnQAENFNVSIPYLQMA 193
                 789**********9877999*****97765 PP

>> PH_TFIIH  TFIIH p62 subunit, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.0   0.0   0.00039       1.7       6      71 ..      33      98 ..      29     109 .. 0.72
   2 !    5.7   0.0    0.0042        19       7      37 ..     164     193 ..     158     201 .. 0.82

  Alignments for each domain:
  == domain 1  score: 9.0 bits;  conditional E-value: 0.00039
    PH_TFIIH  6 dGtLtltekrleWtpdasssapsvsiplseIknlqispags....aKvmLklvlkedkseeesytFtFtn 71
                +G+L++t+ rl W+    +s+ ++si ++ + +  i  a+s    +   L ++ k    +++ + F Ftn
  KOO23800.1 33 KGSLAITNLRLVWICH-RNSRLNLSIGYNAVLSINIRTANSrlrgNTQALYVMTK---YNNSRFEFVFTN 98
                7*************84.45899*******99987765555411114555666666...367777777777 PP

  == domain 2  score: 5.7 bits;  conditional E-value: 0.0042
    PH_TFIIH   7 GtLtltekrleWtpdasssapsvsiplseIk 37 
                 Gt+++++ r+ W ++++ ++ +vsip+ +  
  KOO23800.1 164 GTFFISNVRVVWHANQA-ENFNVSIPYLQMA 193
                 9************8655.8899**9997665 PP

>> Vps36_ESCRT-II  Vacuolar protein sorting protein 36 Vps36
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.7   0.0   5.1e-05      0.23      28      73 ..      24      69 ..      19      84 .. 0.79
   2 ?    2.4   0.0      0.04   1.8e+02      37      70 ..     163     195 ..     158     205 .. 0.77

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 5.1e-05
  Vps36_ESCRT-II 28 gdeKilnrqnGrlyLTthriiyvdsadpkkeslslelklvesvs.ek 73
                    +d+K  n ++G l +T+ r++++  + +++ +ls+  ++v s++ + 
      KOO23800.1 24 EDTKGNNGEKGSLAITNLRLVWI-CHRNSRLNLSIGYNAVLSINiRT 69
                    57888999**************9.55566668999999999995333 PP

  == domain 2  score: 2.4 bits;  conditional E-value: 0.04
  Vps36_ESCRT-II  37 nGrlyLTthriiyvdsadpkkeslslelklvesv 70 
                      G+ ++++ r+++   ++ ++ ++s++  ++  v
      KOO23800.1 163 LGTFFISNVRVVWH-ANQAENFNVSIPYLQMAAV 195
                     59999********6.6666777899987766665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (328 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       468  (0.026103); expected 358.6 (0.02)
Passed bias filter:                      380  (0.0211947); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.44u 0.24s 00:00:00.68 Elapsed: 00:00:00.39
# Mc/sec: 2493.13
//
Query:       KOO23801.1  [L=167]
Description: phosphoglycerate mutase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.1e-21   77.4   0.1    1.4e-21   77.1   0.1    1.1  1  His_Phos_1     Histidine phosphatase superfamily (branch 1)
  ------ inclusion threshold ------
      0.078   13.1   0.0        0.1   12.8   0.0    1.2  1  Lipase_GDSL_3  GDSL-like Lipase/Acylhydrolase family
       0.16   12.3   0.2        4.9    7.7   0.1    2.8  3  HEAT           HEAT repeat


Domain annotation for each model (and alignments):
>> His_Phos_1  Histidine phosphatase superfamily (branch 1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   77.1   0.1   2.3e-25   1.4e-21      72     194 .]       2     119 ..       1     119 [. 0.92

  Alignments for each domain:
  == domain 1  score: 77.1 bits;  conditional E-value: 2.3e-25
                 EE-GGGS----GGGTT-B.HHHHHH..HSHHHHHHHHH-GGG-BS-BHHHHHHHHHHHHHHHHHHTTTSEEEEEE-HHHHHHHHHHHHT--GGGGGGB- CS
  His_Phos_1  72 eldegLrEidfGdweglttaeiaeeypeeleawlrdpadvrppggEsledvaaRvaaaleelaarhegetvlvVsHggvirallarllglpleelrrle 170
                 +++++L  +++G+ +gl+ +e+  +y+e      +d++  +ppggEs  +v++R++aal ++a+rh+g++vlvV+H+ v+  +  +++g +      l 
  KOO23801.1   2 HTEARLSQLNYGVIDGLNAEEVSVRYAEVATMLAADDN-WAPPGGESCTEVRKRAMAALAAIAKRHPGKRVLVVTHAEVVANIGDDITGGSRG----LS 95 
                 7899*************999999998887777776666.6999********************************************987655....78 PP

                 --TT-EEEEEE-SS-EEEEEEEE- CS
  His_Phos_1 171 ldnaslsvlefdeggwrlvrlndt 194
                 ++na+ls +++d+g+w+lv+++dt
  KOO23801.1  96 MKNAALSLIRWDHGRWSLVLWGDT 119
                 9********************996 PP

>> Lipase_GDSL_3  GDSL-like Lipase/Acylhydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0   1.7e-05       0.1      72     104 ..      47      79 ..      13      91 .. 0.88

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 1.7e-05
  Lipase_GDSL_3  72 saeeirerleyfvktlrkahPktpillvedlst 104
                    s  e+r+r++ ++ +++k+hP + +l+v +++ 
     KOO23801.1  47 SCTEVRKRAMAALAAIAKRHPGKRVLVVTHAEV 79 
                    6689************************98765 PP

>> HEAT  HEAT repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.2   0.0       0.1   6.1e+02       6      19 ..      15      28 ..      12      28 .. 0.86
   2 ?   -3.0   0.0       2.2   1.3e+04       7      14 ..      32      40 ..      30      41 .. 0.71
   3 ?    7.7   0.1   0.00082       4.9      13      29 ..      48      64 ..      45      66 .. 0.89

  Alignments for each domain:
  == domain 1  score: 1.2 bits;  conditional E-value: 0.1
                HHHHT-SSHHHHHH CS
        HEAT  6 lkllsDpspeVRea 19
                +  l+ ++ +VR+a
  KOO23801.1 15 IDGLNAEEVSVRYA 28
                6779********97 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 2.2
                HHH.T-SSH CS
        HEAT  7 kll.sDpsp 14
                ++l  D+++
  KOO23801.1 32 TMLaADDNW 40
                566689998 PP

  == domain 3  score: 7.7 bits;  conditional E-value: 0.00082
                SHHHHHHHHHHHHHHHH CS
        HEAT 13 speVReaAakaLgalae 29
                + eVR+ A  aL+a+a+
  KOO23801.1 48 CTEVRKRAMAALAAIAK 64
                679************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (167 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       669  (0.0373138); expected 358.6 (0.02)
Passed bias filter:                      513  (0.0286129); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.41u 0.25s 00:00:00.65 Elapsed: 00:00:00.40
# Mc/sec: 1245.59
//
Query:       KOO23802.1  [L=958]
Description: putative serine carboxypeptidase cpvl-like protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    5.8e-81  273.0   0.0    8.5e-81  272.5   0.0    1.1  1  Peptidase_S10  Serine carboxypeptidase
    6.1e-10   39.4   0.0    8.1e-09   35.8   0.0    2.4  2  EF-hand_7      EF-hand domain pair
    2.1e-09   36.3   0.0     0.0011   18.4   0.0    2.6  2  EF-hand_1      EF hand
    2.6e-08   33.6   0.0    6.7e-08   32.3   0.0    1.7  1  EF-hand_8      EF-hand domain pair
      8e-08   31.6   0.0     0.0019   18.0   0.0    2.8  2  EF-hand_6      EF-hand domain
      1e-06   27.9   0.1      0.017   14.6   0.0    2.6  2  EF-hand_5      EF hand


Domain annotation for each model (and alignments):
>> Peptidase_S10  Serine carboxypeptidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  272.5   0.0   2.8e-84   8.5e-81       8     417 ..     480     887 ..     474     888 .. 0.89

  Alignments for each domain:
  == domain 1  score: 272.5 bits;  conditional E-value: 2.8e-84
                    SSEEEEEEEECSTTTTEEEEEEEEE-SSGTTTS-EEEEE--TTTB-THHHHHHTTSSEEEETTTTSEEEE-TT-GGGCSEEEEE--STTSTT-EET CS
  Peptidase_S10   8 nfkqysGYldveeeedkslFYwfveseknpeedplvlWLnGGPGCsSldGlleElGPfrvnkdstkkleenpysWnkvanvlfldqPvGvGFSysn 103
                    +++ ysG+++++++++++ F+ + +  +  +++p++lWLnGGPG+sSl G++ ElGPf +   ++ ++e +   W   a+++ +d+P+GvG+S ++
     KOO23802.1 480 ATELYSGFFEIDAATGSNSFFIYSTPVSGRTDAPVLLWLNGGPGASSLLGFFDELGPFGIS--EKLEIEPRAVGWALDAHLIAIDNPLGVGYSHTS 573
                    5689*********************************************************..679****************************** PP

                    TSSGS--SHHHHHHHHHHHHHHHHHHSTCGTTSEEEEEEETTHHHHHHHHHHHHHTHCCH--S.STSEEEEEEEESE-SBHHHHHCCHHHHHHHTT CS
  Peptidase_S10 104 tksdvktddeevaedlyefLkkffekfpeyksrdfyitGESYaGhyvPalakeilkknkkekk.kkinLkGlligNglideaeqvnsyvefayehg 198
                      + ++t++++v++dlye+L++ff+ fp+++ + +y+tGESYaG+yvPa a +i+++n+     ++inL G++ig+g  d+ +q++   + +++ g
     KOO23802.1 574 VLERMATNQTTVGDDLYEALHQFFQLFPNLRANALYVTGESYAGKYVPACAYTIHERNQLVPAdERINLAGIAIGDGAFDPPTQFTGFGPLLFNLG 669
                    **********************************************************9876569******************************* PP

                    SSHHHHHHHHHHHHEETHHHHHHHHHHHHHHHHHHHHHHHHHCHCEETTETTSEETTSSEEHHHCTTCCCCTTTTTCHHHHHHHHTSHHHHHHTT- CS
  Peptidase_S10 199 liseeeyeslkkacekkeeleqesekcanllekaskvavekenkglnvynileeccklkaelkksstdaqggedpydesyvekylnkkeVrkalhv 294
                    l + +  + + ++ +   +++ +  +   ++++++++ +  + +g +   + + +       ++ +   ++g    +++++ ++l+ +eV  alhv
     KOO23802.1 670 LADTRAAK-VYDQYDARLTAALAAGDLLGAFRSFDEMLNG-DYWGTDRTYYHNTT---GMGSNYFNFALEPGAASLTKRAYPEWLALPEVAAALHV 760
                    *9955554.6666766656666666677777777775433.23333222222111...223677888899*************************9 PP

                    -TTSSS--SB-HHHHHHCTCCC-SBCHHHHHHHHHTT-EEEEEEETT-STT-HHHHHHHHHHTECTTECCSCCCEEEE..TTTCESEEEEEEEE.. CS
  Peptidase_S10 295 nasvkkweecndsvfeqleddisksveeileellesglrvliynGdvDlicnvlgteawikklelsgkkefrpwevsp..kkengqvaGyvkey.. 386
                       +  ++  n++v++ l  d++  v ++l+ ll++ + vliy+G++D+i    gte+ ++kl +sg+++f ++ + +  +++     Gy ++   
     KOO23802.1 761 G--DTPYSVFNQTVEDRLMADWMVGVVPWLQVLLDK-YDVLIYSGQYDVILGPPGTERAVDKLVWSGAADFGAAPTVQviDEQRADLLGYARQAks 853
                    6..679********999999999************9.*************************************9977889999999****99966 PP

                    .TT..EEEEEETT--SSHHHHSHHHHHHHHHHHH CS
  Peptidase_S10 387 .en..ltfltvkgaGHmvPedkpeealqllerfi 417
                     +n  ++++  +g GHmvP+d+pe+a+++l+rf+
     KOO23802.1 854 aSNttFSYVMLRGCGHMVPTDQPERAYTMLQRFL 887
                    63367***************************97 PP

>> EF-hand_7  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.8   0.0   2.7e-12   8.1e-09       3      69 ..     121     187 ..     119     189 .. 0.92
   2 ?    0.8   0.0      0.23   6.8e+02       5      35 ..     676     706 ..     672     734 .. 0.83

  Alignments for each domain:
  == domain 1  score: 35.8 bits;  conditional E-value: 2.7e-12
   EF-hand_7   3 klkeaFkelDtdgdgyldkeellrllrkifqgagegsklsdeelellfkefDtdkdGvisfdEFlkl 69 
                 ++++aF+++D d+ g+++ +el+++l++++  +  g+++s   +e+++   Dtd +G+++f EF+++
  KOO23802.1 121 ACRRAFDAIDADRGGSISAAELREALERLSVRNLAGEEPSAVDVEAMLSAADTDENGTVDFAEFVAI 187
                 57899***********************999987777778889*********************987 PP

  == domain 2  score: 0.8 bits;  conditional E-value: 0.23
   EF-hand_7   5 keaFkelDtdgdgyldkeellrllrkifqga 35 
                   +++++D + +  l   +ll ++r+++++ 
  KOO23802.1 676 AKVYDQYDARLTAALAAGDLLGAFRSFDEML 706
                 56899**************888***998775 PP

>> EF-hand_1  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.0   3.5e-06      0.01       2      28 ..     122     148 ..     121     149 .. 0.93
   2 !   18.4   0.0   3.6e-07    0.0011       2      26 ..     164     188 ..     163     191 .. 0.91

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 3.5e-06
                 HHHHHHHHTTTSSSEEEHHHHHHHHHH CS
   EF-hand_1   2 lkeiFrefDkDgdGkIdfeEfkellkk 28 
                 ++++F+ +D D+ G I+  E++e+l++
  KOO23802.1 122 CRRAFDAIDADRGGSISAAELREALER 148
                 689*********************987 PP

  == domain 2  score: 18.4 bits;  conditional E-value: 3.6e-07
                 HHHHHHHHTTTSSSEEEHHHHHHHH CS
   EF-hand_1   2 lkeiFrefDkDgdGkIdfeEfkell 26 
                 ++ + + +D+D +G++df Ef++++
  KOO23802.1 164 VEAMLSAADTDENGTVDFAEFVAII 188
                 7899******************986 PP

>> EF-hand_8  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.3   0.0   2.2e-11   6.7e-08       2      50 ..     134     186 ..     122     188 .. 0.90

  Alignments for each domain:
  == domain 1  score: 32.3 bits;  conditional E-value: 2.2e-11
   EF-hand_8   2 kgkItreelrrilrilglkk....glseeevdilfrefDtdgdGkisfeEFcv 50 
                 +g+I+ +elr++l  l  +       s+ +v+++++++Dtd++G+++f EF++
  KOO23802.1 134 GGSISAAELREALERLSVRNlageEPSAVDVEAMLSAADTDENGTVDFAEFVA 186
                 79***********556544456688**************************85 PP

>> EF-hand_6  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.0   0.0   6.4e-07    0.0019       3      27 ..     123     147 ..     121     155 .. 0.92
   2 !   10.6   0.0   0.00015      0.46       8      26 ..     170     188 ..     163     195 .. 0.85

  Alignments for each domain:
  == domain 1  score: 18.0 bits;  conditional E-value: 6.4e-07
   EF-hand_6   3 reaFklfDkdgdGkidaeElrkalr 27 
                 r+aF+++D d+ G+i+a+Elr al 
  KOO23802.1 123 RRAFDAIDADRGGSISAAELREALE 147
                 89*********************98 PP

  == domain 2  score: 10.6 bits;  conditional E-value: 0.00015
   EF-hand_6   8 lfDkdgdGkidaeElrkal 26 
                 + D+d +G++d++E+++++
  KOO23802.1 170 AADTDENGTVDFAEFVAII 188
                 67*************9976 PP

>> EF-hand_5  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.6   0.0   5.5e-06     0.017       4      23 ..     125     144 ..     123     146 .. 0.90
   2 !   10.7   0.0   9.7e-05      0.29       2      23 ..     165     186 ..     164     189 .. 0.87

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 5.5e-06
                 HHHHH-SS-SSCE-HHHHHH CS
   EF-hand_5   4 tFqaiDlNgDGkIskeELkt 23 
                 +F+aiD+++ G Is+ EL++
  KOO23802.1 125 AFDAIDADRGGSISAAELRE 144
                 5*****************97 PP

  == domain 2  score: 10.7 bits;  conditional E-value: 9.7e-05
                 HHHHHHH-SS-SSCE-HHHHHH CS
   EF-hand_5   2 kdtFqaiDlNgDGkIskeELkt 23 
                 +++++a+D++  G++++ E+ +
  KOO23802.1 165 EAMLSAADTDENGTVDFAEFVA 186
                 56899**************965 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (958 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       501  (0.0279436); expected 358.6 (0.02)
Passed bias filter:                      418  (0.0233142); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.69u 0.27s 00:00:00.96 Elapsed: 00:00:00.43
# Mc/sec: 6629.92
//
Query:       KOO23803.1  [L=577]
Description: hypothetical protein Ctob_008176, partial [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    0.00071   19.4   0.0     0.0015   18.4   0.0    1.4  1  VHL       VHL beta domain


Domain annotation for each model (and alignments):
>> VHL  VHL beta domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.4   0.0   8.2e-08    0.0015      14      59 ..      10      56 ..       3      67 .. 0.84

  Alignments for each domain:
  == domain 1  score: 18.4 bits;  conditional E-value: 8.2e-08
         VHL 14 FcnrsprvvkplWidfeG.ePqsYeelkPgtgrrmttyvgHpWlFRD 59
                  n +p  v+ lWi+ e  e  sY++++ g+    +t+ gH W  R 
  KOO23803.1 10 VINETPGEVQLLWINDETrEEVSYTNIRAGQRATQQTFPGHEWHCRT 56
                579***********998725689********************9984 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (577 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       379  (0.0211389); expected 358.6 (0.02)
Passed bias filter:                      305  (0.0170115); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.54u 0.26s 00:00:00.80 Elapsed: 00:00:00.43
# Mc/sec: 4017.98
//
Query:       KOO23804.1  [L=83]
Description: hypothetical protein Ctob_008180 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      1e-06   28.8   1.5    1.4e-06   28.4   1.5    1.3  1  RPS31     Ribosomal protein S31e
  ------ inclusion threshold ------
      0.079   13.1   0.1      0.093   12.8   0.1    1.3  1  GPHR_N    The Golgi pH Regulator (GPHR) Family N-terminal
      0.088   12.9   6.4       0.14   12.3   6.4    1.3  1  Thx       30S ribosomal protein Thx


Domain annotation for each model (and alignments):
>> RPS31  Ribosomal protein S31e
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.4   1.5   2.3e-10   1.4e-06      47      79 ..      36      68 ..       7      80 .. 0.77

  Alignments for each domain:
  == domain 1  score: 28.4 bits;  conditional E-value: 2.3e-10
       RPS31 47 sssiplvycgrgdrktakgkrfnhsfgnarprn 79
                 s +  v  grgd++takgkr  +sfg +rpr 
  KOO23804.1 36 VSRLGEVTMGRGDKRTAKGKRKAKSFGMSRPRG 68
                456677999**********************96 PP

>> GPHR_N  The Golgi pH Regulator (GPHR) Family N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.1   1.6e-05     0.093      18      37 ..       8      27 ..       6      59 .. 0.80

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 1.6e-05
      GPHR_N 18 lmAiLSGfGavstpyetfsl 37
                 +A+LSG++a ++p +++  
  KOO23804.1  8 ALAALSGVAAFTAPPTMMPS 27
                58*************99985 PP

>> Thx  30S ribosomal protein Thx
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   6.4   2.3e-05      0.14       1      25 [.      44      68 ..      44      71 .. 0.94

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 2.3e-05
                X-TT-TTSHHHHHHTT--SSSSB-- CS
         Thx  1 mGKGDRRtRRGKiWRGtYGKYRPRK 25
                mG+GD+Rt +GK     +G  RPR 
  KOO23804.1 44 MGRGDKRTAKGKRKAKSFGMSRPRG 68
                9**********************95 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (83 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       306  (0.0170673); expected 358.6 (0.02)
Passed bias filter:                      208  (0.0116013); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.34u 0.27s 00:00:00.61 Elapsed: 00:00:00.40
# Mc/sec: 615.34
//
Query:       KOO23805.1  [L=272]
Description: glutathione s-transferase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.9e-11   43.0   0.0    6.7e-11   42.3   0.0    1.3  1  GST_C     Glutathione S-transferase, C-terminal domain
    2.2e-06   27.9   0.0    5.1e-06   26.7   0.0    1.7  1  GST_N     Glutathione S-transferase, N-terminal domain
    2.5e-06   27.6   0.0    4.2e-06   26.9   0.0    1.3  1  GST_C_3   Glutathione S-transferase, C-terminal domain
    8.3e-06   25.7   0.0    2.1e-05   24.4   0.0    1.7  1  GST_C_2   Glutathione S-transferase, C-terminal domain
    3.2e-05   24.2   0.0    6.7e-05   23.2   0.0    1.5  1  GST_N_3   Glutathione S-transferase, N-terminal domain
     0.0076   16.0   0.0      0.029   14.2   0.0    2.0  2  GST_C_6   Glutathione S-transferase, C-terminal domain
     0.0079   16.5   0.0      0.014   15.7   0.0    1.5  1  GST_N_2   Glutathione S-transferase, N-terminal domain
  ------ inclusion threshold ------
       0.06   13.7   0.0       0.24   11.7   0.0    1.8  2  Tom37     Outer mitochondrial membrane transport complex prot


Domain annotation for each model (and alignments):
>> GST_C  Glutathione S-transferase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.3   0.0     3e-14   6.7e-11      34      93 .]     144     203 ..     139     203 .. 0.95

  Alignments for each domain:
  == domain 1  score: 42.3 bits;  conditional E-value: 3e-14
                 HHHHHHHHHHTSSSSSTTSSCHHHHHHHHHHHHHHHHTTTTTTTTSHHHHHHHHHHHTSH CS
       GST_C  34 vlsaleeelkkqdylvGdkltlADialvpilnwlqrlglafgqekfpnlkawlerimarp 93 
                  +s+le  l k+ +lvG ++++AD+a++  ln+++++ + ++ +++pn+ ++++r+++rp
  KOO23805.1 144 PVSVLESILGKSEWLVGGEFSVADVAVASYLNYVPIFFGRASLAGTPNIVKYMQRCAERP 203
                 5899********************************9999999****************9 PP

>> GST_N  Glutathione S-transferase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.7   0.0   2.3e-09   5.1e-06      20      75 ..      52      97 ..      35      98 .. 0.76

  Alignments for each domain:
  == domain 1  score: 26.7 bits;  conditional E-value: 2.3e-09
                HHHHTT-EEEEEEECSTTTCGGCHHHHHHCTTS-SSEEEET.TEEEESHHHHHHHHH CS
       GST_N 20 llaakgveyevvpldfeageekspellklnplgkvPaLedn.gkkltESraIleYia 75
                ++ ++g+e   + + +           +++p+g+vP L d+ g  ++ES+aIl Y+a
  KOO23805.1 52 YANEAGIELTMKAPRP-----------SNHPFGQVPFLTDDgGVEVFESGAILLYLA 97
                5555555555555554...........689***********9999***********8 PP

>> GST_C_3  Glutathione S-transferase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.9   0.0   1.9e-09   4.2e-06      34      93 ..     146     206 ..     143     208 .. 0.90

  Alignments for each domain:
  == domain 1  score: 26.9 bits;  conditional E-value: 1.9e-09
                 HHHHHHHHCHGTSSSSTTS--HHHHHHHHHHHHHHHH...TCCCC-HHHHHHHHHHHTSHHHH CS
     GST_C_3  34 kyfekvlkkkgggylvgdklTyADlalfqvldgleea...ealkkfpklkalyervearpkik 93 
                 +++e +l   ++++lvg+++++AD+a+ ++l+++  +   ++l+  p++ ++++r ++rp+ +
  KOO23805.1 146 SVLESILG--KSEWLVGGEFSVADVAVASYLNYVPIFfgrASLAGTPNIVKYMQRCAERPAFA 206
                 67899999..899*********************999986555999**************876 PP

>> GST_C_2  Glutathione S-transferase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.4   0.0   9.4e-09   2.1e-05      15      69 .]     145     198 ..     143     198 .. 0.84

  Alignments for each domain:
  == domain 1  score: 24.4 bits;  conditional E-value: 9.4e-09
                 HHHCTTT---SS.CTTCS--HHHHHHHHHHHHH.HHHHHS----TT-HHHHHHHHH CS
     GST_C_2  15 ldaleahLadspflfGdqptlaDialapflvrl.raagpgfdireaypnlraWler 69 
                 +++le++L++s +l G+++++aD+a+a  l ++  +   g    ++ pn++++++r
  KOO23805.1 145 VSVLESILGKSEWLVGGEFSVADVAVASYLNYVpIFF--GRASLAGTPNIVKYMQR 198
                 579*************************998874333..44677888999999997 PP

>> GST_N_3  Glutathione S-transferase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.2   0.0     3e-08   6.7e-05      41      72 ..      69     101 ..      45     108 .. 0.85

  Alignments for each domain:
  == domain 1  score: 23.2 bits;  conditional E-value: 3e-08
                 H-TT--SSEEETT.S-EEESHHHHHHHHHHHH- CS
     GST_N_3  41 knplgkvPvLedd.gealtdSlaIidyLeelyp 72 
                  +p g+vP+L+dd g  +++S aI+ yL ++y+
  KOO23805.1  69 NHPFGQVPFLTDDgGVEVFESGAILLYLADAYG 101
                 569********88466899***********998 PP

>> GST_C_6  Glutathione S-transferase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.2   0.0   1.3e-05     0.029       6      64 .]     146     199 ..     143     199 .. 0.87
   2 ?   -3.2   0.0       3.5   7.8e+03      30      43 ..     204     217 ..     204     220 .. 0.81

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 1.3e-05
     GST_C_6   6 eaLselLgdkkyFfGdkPtslDAlvFGhlaqilytplespelrellkeypNLvayceri 64 
                 ++L ++Lg+++++ G + + +D++v ++l  +   p+     r  l  +pN+v+y++r+
  KOO23805.1 146 SVLESILGKSEWLVGGEFSVADVAVASYLNYV---PIFFG--RASLAGTPNIVKYMQRC 199
                 6899***********77************777...44444..78999*********996 PP

  == domain 2  score: -3.2 bits;  conditional E-value: 3.5
     GST_C_6  30 vFGhlaqilytple 43 
                 +F+  a++l+ ++e
  KOO23805.1 204 AFAKCALLLWSKPE 217
                 69999999998765 PP

>> GST_N_2  Glutathione S-transferase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.0   6.2e-06     0.014      38      69 ..      67      98 ..      26      99 .. 0.81

  Alignments for each domain:
  == domain 1  score: 15.7 bits;  conditional E-value: 6.2e-06
                HHHCTTTSSSEEE-CTTEEEESHHHHHHHHHH CS
     GST_N_2 38 prlnprgtVPvLwdkdgqvineSseIlrylet 69
                p  +p+g+VP L d++g  + eS +Il yl++
  KOO23805.1 67 PSNHPFGQVPFLTDDGGVEVFESGAILLYLAD 98
                6668**********9999999*********87 PP

>> Tom37  Outer mitochondrial membrane transport complex protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   0.00011      0.24       5      78 ..      50     116 ..      48     127 .. 0.75
   2 ?   -1.2   0.0       1.1   2.4e+03      41      55 ..     184     198 ..     169     214 .. 0.77

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.00011
       Tom37   5 iaylkllalapfevvessnpslsptgeLPaLkdgegtwisgfdnIveylrkkseesdldaslsakekadatAli 78 
                  +y++ +++ ++++++ + ps  p g++P+L+d++g ++ +   I+ yl + +++     + +ake+a  t ++
  KOO23805.1  50 NWYANEAGI-ELTMKAPR-PSNHPFGQVPFLTDDGGVEVFESGAILLYLADAYGK-----AANAKERAGYTKWV 116
                 588996666.78888865.999***********9999************987422.....35566666555555 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 1.1
       Tom37  41 twisgfdnIveylrk 55 
                 + ++g  nIv+y+++
  KOO23805.1 184 ASLAGTPNIVKYMQR 198
                 566899999999986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (272 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       172  (0.0095934); expected 358.6 (0.02)
Passed bias filter:                      164  (0.00914719); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.42u 0.26s 00:00:00.68 Elapsed: 00:00:00.43
# Mc/sec: 1884.72
//
Query:       KOO23806.1  [L=382]
Description: branched-chain alpha- ketoacid dehydrogenase by an inteRNAl molecular switch [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.3e-83  280.5   0.0    1.7e-83  280.0   0.0    1.1  1  E1_dh         Dehydrogenase E1 component
     0.0006   19.6   0.1     0.0039   17.0   0.1    2.1  1  TPP_enzyme_C  Thiamine pyrophosphate enzyme, C-terminal TPP b


Domain annotation for each model (and alignments):
>> E1_dh  Dehydrogenase E1 component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  280.0   0.0   1.9e-87   1.7e-83       2     299 ..      32     338 ..      31     339 .. 0.95

  Alignments for each domain:
  == domain 1  score: 280.0 bits;  conditional E-value: 1.9e-87
                 HHHHHHHHHHHHHHHHHTTSS-S-----TT-HHHHHHHHHTS-TTSEEEESS--HHHHHHTT--HHHHHHHHTT-TTTSSGTT-..-E..BTT..BEEE CS
       E1_dh   2 klvllrrvedaldalykrkkrigfyhlsagqealkvgiaaalekeDliiteYReagvllarglsleeilaeltgkvkgkggsrh.elmyaekesrilgg 99 
                 ++++ ++ +d++ ++++r++r++fy ++ g+ea +vg+aaal ++D++ ++YRe gv+++rg++ ee   ++  ++ ++ ++r+ ++++++ + + +  
  KOO23806.1  32 ETMVNVNEFDRVFNDAQRQGRLSFYFTNRGEEAQAVGSAAALAPTDWVWPQYRELGVIFYRGYTFEECANQCCHNELDQTKGRQlPMHIGSPKLSCMYV 130
                 6788889999***************************************************************************************** PP

                 -SSTTTHHHHHHHHHHHHHHHTS---EEEEEEGGGTT-HHHHHHHHHHHHTT--EEEEEEEESEETTEEHHHH-S---GGG..TTTTS-EEEEETTSHH CS
       E1_dh 100 ngivgaqvplvaGialaakiegkkevailliGDgAanqGdvyealnlaalwklpvifvveNNkygisTeaekasaskeladrargvgipglrVdgnDpl 198
                 ++++g qvp ++G+a+a+k +++k vai+++G+g a++Gd+  aln+aa++++p+if+++NN+y+isT+++ +++s+ +a r++++gip++rVdgnD+l
  KOO23806.1 131 KSNLGQQVPAANGAAFAMKRRKQKGVAITYFGEGCASEGDIPSALNIAAVHGCPTIFFCRNNGYAISTHTDDQYKSDGIAPRGVAFGIPSIRVDGNDIL 229
                 *************************************************************************************************** PP

                 HHHHHHHHHHHHHHTTT--EEEEEEE--SS-SSTTSHSHSSSHHH........HHHHHHHHH-HHHHHHHHHHHTTSS-HHHHHHHHHHHHHHHHHHHH CS
       E1_dh 199 avyeAvkfAaeraregkgpllielvtYRyggHsesDdpstyrtre........eveevrkkkdpiqrlkelLvkkgvvseeelkeiekevrkeveeavk 289
                 avy+A+k+A++ + e+ +p++ie ++YR++ Hs+sDd+s+yr ++        +  + ++ + pi r+ ++L++kg++s e + +++k  rk+   a++
  KOO23806.1 230 AVYSATKEARRICIEEGRPAMIEGMSYRINSHSTSDDDSKYRRSKapvegfegDERAYWEARSPIFRFGKYLINKGWWSVEREATLRKVSRKRAITALN 328
                 ******************************************65422222222456789999************************************* PP

                 HHHHS----G CS
       E1_dh 290 kaeskkelep 299
                  ae  + +++
  KOO23806.1 329 DAELLPNPHV 338
                 **99988886 PP

>> TPP_enzyme_C  Thiamine pyrophosphate enzyme, C-terminal TPP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.0   0.1   4.3e-07    0.0039      26     152 ..     130     252 ..     115     253 .. 0.71

  Alignments for each domain:
  == domain 1  score: 17.0 bits;  conditional E-value: 4.3e-07
                   TTS-TTTHHHHHHHHHHH....STTSEEEEEEEHHHHHHT..GGGHHHHHHTT-SEEEEEEE-SBCCCHHHHHHHHTCCTTTTSBB.BS----HHHH CS
  TPP_enzyme_C  26 glgtmGyglpaAiGakla....kpdrevvaivGDGgflmi..lqelatavrrnlpitvvvlnNegygmtggqqepfggkrksgpagkdlkpvdfakl 116
                   + + +G ++paA Ga++a    k++   + + G G+       ++l  a+ ++ p ++++ nN++   +  +++ ++++   +              
    KOO23806.1 130 VKSNLGQQVPAANGAAFAmkrrKQKGVAITYFGEGCASEGdiPSALNIAAVHGCPTIFFCRNNGYA--ISTHTDDQYKSDGIA------------PR 212
                   56789************654433456788889****765442788889999988988888888776..555556666533222............23 PP

                   HHHTTSEEEEESSH.HHHHHHHHHHHH....CSSSEEEEE CS
  TPP_enzyme_C 117 aealGakgarvekadveeleealkeal....ekkgpalie 152
                     a+G++ +rv+ +d+  +  a kea+    e+++pa+ie
    KOO23806.1 213 GVAFGIPSIRVDGNDILAVYSATKEARriciEEGRPAMIE 252
                   3567777777777777777777777776777777777775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (382 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       522  (0.0291148); expected 358.6 (0.02)
Passed bias filter:                      452  (0.0252106); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.49u 0.25s 00:00:00.74 Elapsed: 00:00:00.41
# Mc/sec: 2792.89
//
Query:       KOO23807.1  [L=747]
Description: hemagglutinin-related protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    5.8e-25   88.2   0.0    1.3e-24   87.0   0.0    1.6  1  Laminin_G_3  Concanavalin A-like lectin/glucanases superfamil
    1.8e-20   72.5   0.7      3e-05   24.1   0.0    6.2  6  Kelch_6      Kelch motif
    2.6e-19   69.0   1.0     0.0022   17.9   0.0    6.0  6  Kelch_4      Galactose oxidase, central domain
    2.1e-17   63.0   0.1    5.5e-06   26.5   0.0    4.9  4  Kelch_3      Galactose oxidase, central domain
      6e-17   61.0   0.0    5.4e-05   22.7   0.0    5.5  5  Kelch_1      Kelch motif
      9e-17   61.8   0.0    1.7e-16   60.9   0.0    1.5  1  Filamin      Filamin/ABP280 repeat
    3.6e-16   58.8   2.5      0.003   17.5   0.0    5.0  4  Kelch_5      Kelch motif
    5.8e-15   54.6   2.4       0.08   13.0   0.0    6.4  6  Kelch_2      Kelch motif
  ------ inclusion threshold ------
      0.029   14.7   0.0       0.43   10.9   0.0    2.3  2  Invasin_D3   Invasin, domain 3


Domain annotation for each model (and alignments):
>> Laminin_G_3  Concanavalin A-like lectin/glucanases superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   87.0   0.0   6.8e-28   1.3e-24       1     152 []     539     693 ..     539     693 .. 0.85

  Alignments for each domain:
  == domain 1  score: 87.0 bits;  conditional E-value: 6.8e-28
  Laminin_G_3   1 dggsdyvtlpd.aslptssfTvsaWvkpdslpsaaqiiissssdg.....rgfelgldgsgrlrfsvnagngaeesvtsgasvpageWtHvavtyd.g 91 
                  dg +d + +p+ +++ ++ +T++aWv+p +++   +i+  +s++g      + +l+++++g+++ +v a++   + v+ + sv+ag+W+Hva+  + +
   KOO23807.1 539 DGVDDEIMIPMlPTICAEKYTIEAWVRPAKVGP-MNIFC-RSDEGypgkaWSHQLRINNEGKFEHYVEADE--KFCVSHTLSVEAGKWYHVAGSASsD 632
                  6789999****88899****************9.66666.4555577844555555677778888888775..89999******************77 PP

  Laminin_G_3  92 gtlrlYvNGvevgsatltggllsatsgplviGrdp.ggddpfdGlidevriynralsaaeIa 152
                  g+l+l+v+G+e g+ ++ ggl + + + ++iG+ + +g  +f G i evr++n+a++++eIa
   KOO23807.1 633 GELKLFVDGQEEGTPQDIGGLRQ-KLDRWFIGSATgDGMGYFEGNIGEVRLFNYARTEDEIA 693
                  89*****************9664.667899**999678***********************7 PP

>> Kelch_6  Kelch motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.0   4.8e-06    0.0095       4      50 .]     248     300 ..     245     300 .. 0.88
   2 !   13.0   0.0     5e-05     0.099       4      40 ..     302     338 ..     299     340 .. 0.93
   3 !   24.1   0.0   1.5e-08     3e-05       3      50 .]     352     399 ..     350     399 .. 0.91
   4 !    6.4   0.0    0.0058        12       1      41 [.     402     441 ..     402     442 .. 0.93
   5 ?    5.2   0.0     0.014        28       2      42 ..     453     492 ..     452     500 .. 0.93
   6 ?   -0.7   0.0         1   2.1e+03      10      34 ..     507     530 ..     498     533 .. 0.78

  Alignments for each domain:
  == domain 1  score: 16.2 bits;  conditional E-value: 4.8e-06
     Kelch_6   4 ghslvsvggkiYifGGytds...spylnkvwvydpetksWeq...lpplpvpr 50 
                 + ++v++g +++ifGG+ +s     +ln v+ +++e ++Weq   ++ +p pr
  KOO23807.1 248 HAAVVTYGRSLVIFGGLAGStskQHALNGVHSIHIEKMRWEQpkvIGKPPSPR 300
                 456699****************9778999************988888888887 PP

  == domain 2  score: 13.0 bits;  conditional E-value: 5e-05
     Kelch_6   4 ghslvsvggkiYifGGytdsspylnkvwvydpetksW 40 
                 ++s++++g ++ i+GG +d +  ++ +w +d+e  sW
  KOO23807.1 302 ACSSCLAGHRLLIYGGEVDKGVLTDEFWALDLERASW 338
                 79**********************************9 PP

  == domain 3  score: 24.1 bits;  conditional E-value: 1.5e-08
     Kelch_6   3 aghslvsvggkiYifGGytdsspylnkvwvydpetksWeqlpplp.vpr 50 
                 a++++++vg+k Y fGG+++   ++n+++ +++ t  We+l + p +pr
  KOO23807.1 352 AFGAAACVGNKAYFFGGSDG-KLPTNRFHAFNIVTQIWEPLDDNPgGPR 399
                 4788999*************.9*******************99985565 PP

  == domain 4  score: 6.4 bits;  conditional E-value: 0.0058
     Kelch_6   1 praghslvsvggkiYifGGytdsspylnkvwvydpetksWe 41 
                 pr ghsl +v   ++++GG++   + ++ + +yd  t+ W+
  KOO23807.1 402 PRFGHSLLTVEANLVMYGGRDM-LMGYSTLAIYDTATNIWS 441
                 57899******99*******99.9**************998 PP

  == domain 5  score: 5.2 bits;  conditional E-value: 0.014
     Kelch_6   2 raghslvsvggkiYifGGytdsspylnkvwvydpetksWeq 42 
                 ra+hs++++g  ++++ G+   ++ +n++ +++++t  We 
  KOO23807.1 453 RAFHSSFLWGRNVVVALGNEK-ENESNQMNLLNMDTLYWES 492
                 89*****************99.999**************96 PP

  == domain 6  score: -0.7 bits;  conditional E-value: 1
     Kelch_6  10 vggkiYifGGytdsspylnkvwvyd 34 
                  +gk+ ++GG     +  n + +++
  KOO23807.1 507 LDGKLLACGGEES-KEKKNNLSLFN 530
                 699*******987.66666666666 PP

>> Kelch_4  Galactose oxidase, central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.5   0.0   0.00049      0.98       4      41 ..     247     287 ..     246     298 .. 0.75
   2 !   17.9   0.0   1.1e-06    0.0022       1      42 [.     299     339 ..     299     351 .. 0.82
   3 !   12.9   0.0   4.1e-05     0.082      12      45 ..     360     397 ..     352     401 .. 0.81
   4 !   17.7   0.0   1.4e-06    0.0027       1      43 [.     402     442 ..     402     446 .. 0.94
   5 ?    3.6   0.0     0.034        68       2      43 ..     453     492 ..     452     497 .. 0.73
   6 ?   -1.5   0.0       1.4   2.7e+03       1      24 [.     498     520 ..     498     530 .. 0.80

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 0.00049
     Kelch_4   4 ghsatsipdgtiylfGGrgedg...tllndlylldlstntW 41 
                 +h+a+++++ ++++fGG  + +    +ln ++ + ++  +W
  KOO23807.1 247 SHAAVVTYGRSLVIFGGLAGSTskqHALNGVHSIHIEKMRW 287
                 7****************877666666666666666666666 PP

  == domain 2  score: 17.9 bits;  conditional E-value: 1.1e-06
     Kelch_4   1 pRaghsatsipdgtiylfGGrgedgtllndlylldlstntWr 42 
                 pR+ +s++  +  ++ ++GG+ ++g l ++ ++ldl+  +W 
  KOO23807.1 299 PRGACSSCLAG-HRLLIYGGEVDKGVLTDEFWALDLERASWI 339
                 78888888885.9************************99994 PP

  == domain 3  score: 12.9 bits;  conditional E-value: 4.1e-05
     Kelch_4  12 dgtiylfGGrgedgtllndlylldlstntWrrl.....g 45 
                 +++ y fGG  ++  + n  +++++ t  W++l     g
  KOO23807.1 360 GNKAYFFGGSDGK-LPTNRFHAFNIVTQIWEPLddnpgG 397
                 3799*********.7*****************9765544 PP

  == domain 4  score: 17.7 bits;  conditional E-value: 1.4e-06
     Kelch_4   1 pRaghsatsipdgtiylfGGrgedgtllndlylldlstntWrr 43 
                 pR+ghs+  +   +++++GGr   +  ++ l ++d++tn W++
  KOO23807.1 402 PRFGHSLLTV-EANLVMYGGRDMLM-GYSTLAIYDTATNIWST 442
                 8*****9999.599**********7.***************85 PP

  == domain 5  score: 3.6 bits;  conditional E-value: 0.034
     Kelch_4   2 RaghsatsipdgtiylfGGrgedgtllndlylldlstntWrr 43 
                 Ra+hs++ ++++ ++  G + e+   +n + ll+  t  W+ 
  KOO23807.1 453 RAFHSSFLWGRNVVVALGNEKENE--SNQMNLLNMDTLYWES 492
                 9*********99999888666654..6666666666666665 PP

  == domain 6  score: -1.5 bits;  conditional E-value: 1.4
     Kelch_4   1 pRaghsatsipdgtiylfGGrged 24 
                 +R+g ++  + dg++   GG+ ++
  KOO23807.1 498 ARRGGAFGLL-DGKLLACGGEESK 520
                 6888888888.6999999**9887 PP

>> Kelch_3  Galactose oxidase, central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.9   0.0   5.3e-05       0.1       1      41 [.     255     300 ..     255     308 .. 0.83
   2 !   15.1   0.0     1e-05     0.021       1      46 [.     309     356 ..     309     358 .. 0.86
   3 !   26.5   0.0   2.8e-09   5.5e-06       1      47 [.     360     409 ..     360     411 .. 0.92
   4 ?    2.2   0.0      0.11   2.3e+02      17      46 ..     426     458 ..     413     460 .. 0.70

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 5.3e-05
     Kelch_3   1 gdrlyifGGlgd..dgqdrlndvyvydldtntWaei...aslppaR 41 
                 g +l+ifGGl +  + q +ln v+++ +++  W++    + +p++R
  KOO23807.1 255 GRSLVIFGGLAGstSKQHALNGVHSIHIEKMRWEQPkviGKPPSPR 300
                 5689*******974449999**************988898888877 PP

  == domain 2  score: 15.1 bits;  conditional E-value: 1e-05
     Kelch_3   1 gdrlyifGGlgddgqdrlndvyvydldtntWaei...aslppaRaghaa 46 
                 g+rl+i+GG+  d +  + +++++dl++ +W      +  p++ a+ aa
  KOO23807.1 309 GHRLLIYGGEV-DKGVLTDEFWALDLERASWIPMnikGVAPGPVAFGAA 356
                 799********.79*****************955557777888887766 PP

  == domain 3  score: 26.5 bits;  conditional E-value: 2.8e-09
     Kelch_3   1 gdrlyifGGlgddgqdrlndvyvydldtntWaei.....aslppaRaghaat 47 
                 g+++y+fGG +  g  ++n +++++++t  W+ +     ++ p++R gh++ 
  KOO23807.1 360 GNKAYFFGGSD--GKLPTNRFHAFNIVTQIWEPLddnpgGPRPSPRFGHSLL 409
                 89*********..*******************998777777899*****975 PP

  == domain 4  score: 2.2 bits;  conditional E-value: 0.11
     Kelch_3  17 rlndvyvydldtntWaeiaslpp...aRaghaa 46 
                 +++++  yd++tn W + a+       Ra+h++
  KOO23807.1 426 GYSTLAIYDTATNIWSTPATRGDicrERAFHSS 458
                 555555699*******99666666669999997 PP

>> Kelch_1  Kelch motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.3   0.0    0.0001       0.2       1      40 [.     245     288 ..     245     290 .. 0.90
   2 !   10.3   0.0    0.0002      0.39       1      42 [.     299     341 ..     299     343 .. 0.94
   3 !   22.7   0.0   2.7e-08   5.4e-05       4      42 ..     353     391 ..     350     395 .. 0.92
   4 !    5.2   0.0    0.0082        16       2      41 ..     403     442 ..     402     445 .. 0.77
   5 ?    4.3   0.0     0.015        30       1      20 [.     498     517 ..     498     527 .. 0.85

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.0001
                 BBBSEEEEEETTEEEEEEEBCS....SSBEEEEEEEETTTTEEE CS
     Kelch_1   1 aragagavvvggkiYviGGsdg....gnalssvevyDpetntWr 40 
                 + ++a++v+ g  + ++GG  g    + al+ v  +  e+  W+
  KOO23807.1 245 PFSHAAVVTYGRSLVIFGGLAGstskQHALNGVHSIHIEKMRWE 288
                 579*******************9999999999999988888887 PP

  == domain 2  score: 10.3 bits;  conditional E-value: 0.0002
                 BBBSEEEEEETTEEEEEEEBCS.SSBEEEEEEEETTTTEEEEE CS
     Kelch_1   1 aragagavvvggkiYviGGsdg.gnalssvevyDpetntWrel 42 
                 +r  ++++  g+++ + GG  + g  ++ ++++D+e  +W ++
  KOO23807.1 299 PRGACSSCLAGHRLLIYGGEVDkGVLTDEFWALDLERASWIPM 341
                 688899**********************************987 PP

  == domain 3  score: 22.7 bits;  conditional E-value: 2.7e-08
                 SEEEEEETTEEEEEEEBCSSSBEEEEEEEETTTTEEEEE CS
     Kelch_1   4 gagavvvggkiYviGGsdggnalssvevyDpetntWrel 42 
                   +a++vg+k Y +GGsdg  +++++ +++ +t+ W++l
  KOO23807.1 353 FGAAACVGNKAYFFGGSDGKLPTNRFHAFNIVTQIWEPL 391
                 5689*********************************98 PP

  == domain 4  score: 5.2 bits;  conditional E-value: 0.0082
                 BBSEEEEEETTEEEEEEEBCSSSBEEEEEEEETTTTEEEE CS
     Kelch_1   2 ragagavvvggkiYviGGsdggnalssvevyDpetntWre 41 
                 r g++  +v   +   GG+d     s++ +yD+ tn W+ 
  KOO23807.1 403 RFGHSLLTVEANLVMYGGRDMLMGYSTLAIYDTATNIWST 442
                 55566666666666679999999999999*********85 PP

  == domain 5  score: 4.3 bits;  conditional E-value: 0.015
                 BBBSEEEEEETTEEEEEEEB CS
     Kelch_1   1 aragagavvvggkiYviGGs 20 
                 ar+g ++  ++gk+ ++GG 
  KOO23807.1 498 ARRGGAFGLLDGKLLACGGE 517
                 6899999************5 PP

>> Filamin  Filamin/ABP280 repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.9   0.0   8.6e-20   1.7e-16       3     102 ..     114     217 ..     112     218 .. 0.93

  Alignments for each domain:
  == domain 1  score: 60.9 bits;  conditional E-value: 8.6e-20
                 STTSEEEESGGGTEEETTS-EEEEEEESSSTSCCCSTTS..EEEEE..ESSTS...........EEEEEEEE-SSSEEEEEE--SSSCEEEEEEEETTC CS
     Filamin   3 dpskskvnGpGieasvagesltFtvytkdakgeksevggdelqvrivtgsphgaatks......svkievvdnedgtytvsYtpeepgtyrvsvkldgk 95 
                  psk++++Gp +  +  g+s  F  +++d +g+ s  gg +++vr+  ++p++  +k+      +++ ev+d++dg+y v+ + +++g+y+++v ldg+
  KOO23807.1 114 APSKVIMTGPCVTYALEGQSNFFMLQARDTYGNMSGNGGAKFDVRV--SRPDSLTKKQlgetqpDAPPEVIDRGDGSYLVRLLHTRKGRYEINVDLDGE 210
                 69**********99999*****************************..88888866645666669999******************************* PP

                 E-TTSSE CS
     Filamin  96 higgsPf 102
                 +i+gsPf
  KOO23807.1 211 PIAGSPF 217
                 ******9 PP

>> Kelch_5  Kelch motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.3   0.0   0.00027      0.54       2      28 ..     243     271 ..     242     278 .. 0.84
   2 !   16.6   0.0   2.8e-06    0.0057       2      39 ..     297     333 ..     296     334 .. 0.89
   3 !   10.1   0.1   0.00031      0.61       2      26 ..     348     374 ..     347     382 .. 0.80
   4 !   17.5   0.0   1.5e-06     0.003       2      41 ..     400     437 ..     400     443 .. 0.81

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.00027
     Kelch_5   2 PppRaghcavtvsekiYvyGGkvg..rdg 28 
                 P+p++++++vt++ ++ ++GG  g  + +
  KOO23807.1 243 PEPFSHAAVVTYGRSLVIFGGLAGstSKQ 271
                 99*******************99865555 PP

  == domain 2  score: 16.6 bits;  conditional E-value: 2.8e-06
     Kelch_5   2 PppRaghcavtvsekiYvyGGkvgrdgsvsddvyvLdl 39 
                 P+pR   +++ +++ +++yGG v   g ++d+++ Ldl
  KOO23807.1 297 PSPRGACSSCLAGHRLLIYGGEV-DKGVLTDEFWALDL 333
                 7888888889*************.588889*******8 PP

  == domain 3  score: 10.1 bits;  conditional E-value: 0.00031
     Kelch_5   2 PppRaghcavtvsekiYvyGGkvg..r 26 
                 P p a ++a+ v++k Y++GG +g  +
  KOO23807.1 348 PGPVAFGAAACVGNKAYFFGGSDGklP 374
                 888888899999*********997552 PP

  == domain 4  score: 17.5 bits;  conditional E-value: 1.5e-06
     Kelch_5   2 PppRaghcavtvsekiYvyGGkvgrdgsvsddvyvLdlps 41 
                 P+pR+gh+  tv+ ++ +yGG+++    +++ + ++d+ +
  KOO23807.1 400 PSPRFGHSLLTVEANLVMYGGRDM--LMGYSTLAIYDTAT 437
                 99*********************7..55555566665555 PP

>> Kelch_2  Kelch motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.6   0.0   0.00098         2       3      47 ..     247     292 ..     245     294 .. 0.83
   2 !   13.0   0.0     4e-05      0.08       1      48 [.     299     344 ..     299     345 .. 0.89
   3 !   10.8   0.0   0.00019      0.37       6      45 ..     355     391 ..     354     395 .. 0.93
   4 !    9.6   0.0   0.00048      0.95       1      43 [.     402     441 ..     402     444 .. 0.82
   5 !    6.1   0.0    0.0061        12       2      24 ..     499     524 ..     498     547 .. 0.79
   6 ?   -1.2   0.0       1.1   2.3e+03       2      25 ..     610     633 ..     609     640 .. 0.72

  Alignments for each domain:
  == domain 1  score: 8.6 bits;  conditional E-value: 0.00098
     Kelch_2   3 gghsssvpggkiyvvGGa.htdnpnlsssdvhvldlekhvWeevtp 47 
                 ++ ++++ g  ++++GG  ++  + ++ + vh    ek +We  ++
  KOO23807.1 247 SHAAVVTYGRSLVIFGGLaGSTSKQHALNGVHSIHIEKMRWEQPKV 292
                 577888*************888888888888888999999987665 PP

  == domain 2  score: 13.0 bits;  conditional E-value: 4e-05
     Kelch_2   1 rrgghsssvpggkiyvvGGahtdnpnlsssdvhvldlekhvWeevtpl 48 
                 +rg +ss+  g++++++GG    +++  ++ ++ ldle  +W +++ +
  KOO23807.1 299 PRGACSSCLAGHRLLIYGGE--VDKGVLTDEFWALDLERASWIPMNIK 344
                 799****************9..88888889999999999999999866 PP

  == domain 3  score: 10.8 bits;  conditional E-value: 0.00019
     Kelch_2   6 sssvpggkiyvvGGahtdnpnlsssdvhvldlekhvWeev 45 
                 +++++g+k y++GG+   ++ l ++++h ++  ++ We++
  KOO23807.1 355 AAACVGNKAYFFGGS---DGKLPTNRFHAFNIVTQIWEPL 391
                 6899***********...*****************99987 PP

  == domain 4  score: 9.6 bits;  conditional E-value: 0.00048
     Kelch_2   1 rrgghsssvpggkiyvvGGahtdnpnlsssdvhvldlekhvWe 43 
                 +r+ghs  +++  ++++GG+  d+   + s++ ++d+ ++ W+
  KOO23807.1 402 PRFGHSLLTVEANLVMYGGR--DMLMGY-STLAIYDTATNIWS 441
                 79******************..555444.56778888888886 PP

  == domain 5  score: 6.1 bits;  conditional E-value: 0.0061
     Kelch_2   2 rgghsssvpggkiyvvGGa...htdn 24 
                 r g ++  ++gk++ +GG    +  n
  KOO23807.1 499 RRGGAFGLLDGKLLACGGEeskEKKN 524
                 88999*************96643333 PP

  == domain 6  score: -1.2 bits;  conditional E-value: 1.1
     Kelch_2   2 rgghsssvpggkiyvvGGahtdnp 25 
                 ++ h+ sv  gk y v G+ ++++
  KOO23807.1 610 CVSHTLSVEAGKWYHVAGSASSDG 633
                 577999999999999999944444 PP

>> Invasin_D3  Invasin, domain 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.8   0.0      0.31   6.1e+02      22      50 ..      54      83 ..      51     106 .. 0.73
   2 ?   10.9   0.0   0.00022      0.43      25      90 ..     137     217 ..     129     223 .. 0.68

  Alignments for each domain:
  == domain 1  score: 0.8 bits;  conditional E-value: 0.31
  Invasin_D3 22 stltvtlkDangnp.vsgltvtfsttsag.t 50
                + + + + Da+gn    +++v ++ t +g  
  KOO23807.1 54 AEVAIGIMDAEGNElSPNKSVRVALT-DGqE 83
                56777889******777788999999.7742 PP

  == domain 2  score: 10.9 bits;  conditional E-value: 0.00022
  Invasin_D3  25 tvtlkDangnpvsgltvtfstt..........sagtlsavt........dngdGtytatLtattagtatitptvnGvaiaatat 90 
                  ++++D+ gn  ++   +f  +          +   l++ +        d gdG y + L  t++g + i++ ++G+ ia ++ 
  KOO23807.1 137 MLQARDTYGNMSGNGGAKFDVRvsrpdsltkkQ---LGETQpdappeviDRGDGSYLVRLLHTRKGRYEINVDLDGEPIAGSPF 217
                 68999*****96665555553333545443333...3322233334444***************************76665554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (747 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       266  (0.0148363); expected 358.6 (0.02)
Passed bias filter:                      260  (0.0145016); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.59u 0.26s 00:00:00.85 Elapsed: 00:00:00.43
# Mc/sec: 5172.73
//
Query:       KOO23808.1  [L=310]
Description: ubx domain-containing protein 6-like protein, partial [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.4e-13   50.5   0.0    2.5e-13   49.8   0.0    1.4  1  PUB       PUB domain
    2.2e-09   37.4   0.0    3.8e-09   36.6   0.0    1.4  1  UBX       UBX domain
  ------ inclusion threshold ------
      0.051   14.2   0.6       0.58   10.8   0.0    2.7  3  ThiS      ThiS family


Domain annotation for each model (and alignments):
>> PUB  PUB domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.8   0.0   4.2e-17   2.5e-13       7      58 ..       1      52 [.       1      73 [. 0.92

  Alignments for each domain:
  == domain 1  score: 49.8 bits;  conditional E-value: 4.2e-17
         PUB  7 alktLrkylnNilehpteekyrrIrleNkafkekvlplegavelLealGFee 58
                +l ++rk++ N+ +hp+++kyr++rl+N+++ e +  l +++ lL+a+GF  
  KOO23808.1  1 CLGIIRKLIGNVRDHPDDPKYRKVRLTNPKIAEALGGLLEGLALLSACGFTF 52
                899***********************************************64 PP

>> UBX  UBX domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.6   0.0   6.4e-13   3.8e-09       5      75 ..     164     232 ..     160     237 .. 0.90

  Alignments for each domain:
  == domain 1  score: 36.6 bits;  conditional E-value: 6.4e-13
                 SEEEEEEEETTSTEEEEEEESSSBHHHHHHHHHHHCCCCCTSEEEEETTTTEEGGCCCCSBCCCCTTTSCE CS
         UBX   5 datrlqiRlpdGsrlvrrFkksdtlesvyeyVdsklfekeepFqLltsfPrreltksdkktLsdlgllpns 75 
                  ++ +++R+pdG  l+ +F++s+t+ +v ++V+s + e    F+L    + ++l+++  +tL++++l+p +
  KOO23808.1 164 RKAMIRVRFPDGVVLQGTFSSSATVGAVLAWVESSMREPGHAFEL-AIARGQPLKELS-ETLETAQLCPAA 232
                 5789*****************************************.667888888886.99****999976 PP

>> ThiS  ThiS family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.1       1.8   1.1e+04      27      40 ..     132     150 ..     125     165 .. 0.49
   2 ?    0.6   0.0      0.15   9.1e+02      19      35 ..     183     199 ..     177     227 .. 0.80
   3 ?   10.8   0.0   9.7e-05      0.58       6      37 ..     252     286 ..     248     297 .. 0.82

  Alignments for each domain:
  == domain 1  score: -2.8 bits;  conditional E-value: 1.8
                 HHHHHHHHTCHHG.....T CS
        ThiS  27 lleaLgerypela.....l 40 
                 ll+  +++ +e++     +
  KOO23808.1 132 LLDLAAAKRKEEEqfktrE 150
                 4444444443333333442 PP

  == domain 2  score: 0.6 bits;  conditional E-value: 0.15
                 SSTSBHHHHHHHHHHHT CS
        ThiS  19 aegstvaelleaLgery 35 
                 ++ +tv+++l++++   
  KOO23808.1 183 SSSATVGAVLAWVESSM 199
                 67899999999998655 PP

  == domain 3  score: 10.8 bits;  conditional E-value: 9.7e-05
                 CCHHHHT...CEEEEESSTSBHHHHHHHHHHHTCH CS
        ThiS   6 elrelag...eeelelaegstvaelleaLgerype 37 
                 +l++ a+   +e++e+++g tv+e++++ ++r+++
  KOO23808.1 252 QLMQQAQvlgQEQIEIPQGLTVEEARAWQEARDGA 286
                 55555555669*******************99965 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (310 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       653  (0.0364214); expected 358.6 (0.02)
Passed bias filter:                      446  (0.0248759); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.46u 0.26s 00:00:00.72 Elapsed: 00:00:00.42
# Mc/sec: 2242.01
//
Query:       KOO23809.1  [L=175]
Description: cytochrome c1- heme mitochondrial-like protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.8e-71  240.3   0.0      2e-71  240.2   0.0    1.0  1  Cytochrom_C1  Cytochrome C1 family


Domain annotation for each model (and alignments):
>> Cytochrom_C1  Cytochrome C1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  240.2   0.0   1.1e-75     2e-71      53     218 ..       1     166 [.       1     167 [. 0.99

  Alignments for each domain:
  == domain 1  score: 240.2 bits;  conditional E-value: 1.1e-75
  Cytochrom_C1  53 laaeyevkdgpddegemfeRpgkpaDklpspyaneeaaraanggalppDLsllvkArkggadYiyslLtgYeeppagvevkegqyyNkyfpggviam 149
                   +a+ ++vkdgp+dege+feRpgkp+D++pspy+neeaar+an+ga+ppDLsl+vkAr+ggadYi++lLtgY++ pag++ +e qyyN+yf+gg+i m
    KOO23809.1   1 MAEGIDVKDGPNDEGEYFERPGKPSDYMPSPYPNEEAARFANNGAYPPDLSLIVKARHGGADYIFALLTGYKDVPAGIAPRETQYYNPYFAGGWIGM 97 
                   68899******************************************************************************************** PP

  Cytochrom_C1 150 akpLsdgqveyedgtpatveqmakDvtaFLaWaaepklearkklglkvilfllilavllylvkrkiwak 218
                   ++pL dg+v+y+dgt+at++qmakDv+ FLaW++ep++++rk +g+k+++ l+i+ ++++++kr +w+ 
    KOO23809.1  98 PPPLNDGAVDYDDGTAATASQMAKDVSIFLAWTSEPEHDERKLAGFKAMVALTIMFGFTWYYKRMKWSP 166
                   *******************************************************************86 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (175 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       259  (0.0144459); expected 358.6 (0.02)
Passed bias filter:                      232  (0.0129399); expected 358.6 (0.02)
Passed Vit filter:                        12  (0.000669307); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.27s 00:00:00.66 Elapsed: 00:00:00.42
# Mc/sec: 1261.88
//
Query:       KOO23810.1  [L=226]
Description: hypothetical protein Ctob_006623 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.3e-22   79.2   0.2    4.6e-22   78.7   0.2    1.2  1  DUF1295     Protein of unknown function (DUF1295)
     0.0086   16.5   0.0      0.022   15.2   0.0    1.7  1  ICMT        Isoprenylcysteine carboxyl methyltransferase (ICM
  ------ inclusion threshold ------
       0.01   15.8   0.0      0.024   14.6   0.0    1.6  1  Steroid_dh  3-oxo-5-alpha-steroid 4-dehydrogenase
      0.038   14.4   0.8      0.096   13.1   0.1    2.0  2  PEMT        Phospholipid methyltransferase


Domain annotation for each model (and alignments):
>> DUF1295  Protein of unknown function (DUF1295)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   78.7   0.2     1e-25   4.6e-22      44     194 ..       7     161 ..       3     198 .. 0.81

  Alignments for each domain:
  == domain 1  score: 78.7 bits;  conditional E-value: 1e-25
     DUF1295  44 llLvvlWglRLalhllrrtlkkgeDkryeelrkelgktiallsllvvfvlQavllylvalpvllaaaskeeq..alkaldviglalwlvgivlealaDq 140
                 ++Lv+l+glRL  +l++r +  g+D  + +  + l+kt+ l + + v +   ++  l+a+p+l    s+  +  + +a++++g++++ vg+vlea+aDq
  KOO23810.1   7 AALVCLYGLRLFAFLFWRQF--GQDSGWGRRVAALDKTPRL-ERVPVILSTSLFYALLASPLLFHVQSGGFRsaPSSAIASAGCVVAAVGLVLEAVADQ 102
                 689**************977..6899999999999999775.67778888999999*****98777666544447899********************* PP

     DUF1295 141 Qlsafkkdpankgk...vldsGLwrysRHPNYfgealiWwglflialea..legleala 194
                 Q+s fk  ++ +g      + G++ +sRH NY+ge+++W+g+ +++l a  + g+ + a
  KOO23810.1 103 QKSLFKIALRTAGAadrPFTGGVYAFSRHANYLGEIVFWVGVTVVGLPAllAPGVRWYA 161
                 ********9999973336889*************************9984334444444 PP

>> ICMT  Isoprenylcysteine carboxyl methyltransferase (ICMT) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.0   4.9e-06     0.022      14      61 ..      98     146 ..      84     165 .. 0.73

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 4.9e-06
        ICMT  14 vvmatlGeiwttrvai.lpdhklvksglykylrHPnYllfvilelatll 61 
                 +v  + ++ +   + +     +  + g+y++ rH nYl+ ++  +++ +
  KOO23810.1  98 AVADQQKSLFKIALRTaGAADRPFTGGVYAFSRHANYLGEIVFWVGVTV 146
                 44556677777777775556678899************98887776655 PP

>> Steroid_dh  3-oxo-5-alpha-steroid 4-dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.6   0.0   5.3e-06     0.024      64     103 ..     109     147 ..      53     155 .. 0.69

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 5.3e-06
  Steroid_dh  64 relrkegetkykipr.gglFelvsapnyfgEilewigyalv 103
                 + lr +g + +  p+ gg++ +   +ny+gEi+ w+g ++v
  KOO23810.1 109 IALRTAGAADR--PFtGGVYAFSRHANYLGEIVFWVGVTVV 147
                 35677666655..444*********************9987 PP

>> PEMT  Phospholipid methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.1   2.1e-05     0.096       5      68 ..      85     146 ..      81     161 .. 0.88
   2 ?   -1.5   0.1      0.75   3.4e+03       6      72 ..     168     182 ..     163     189 .. 0.53

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 2.1e-05
        PEMT   5 lGlllialglllvlssiealgefgtfygdfFlelmdklvtsGiYrylnnPeyvgstlgflGlaL 68 
                 +G+++ a+gl+l   + ++ + f+  + +      d++ t+G+Y ++++  y+g ++ ++G++ 
  KOO23810.1  85 AGCVVAAVGLVLEAVADQQKSLFKIALRTA--GAADRPFTGGVYAFSRHANYLGEIVFWVGVTV 146
                 588888888888888888999999999998..8899*************************975 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 0.75
        PEMT   6 GlllialglllvlssiealgefgtfygdfFlelmdklvtsGiYrylnnPeyvgstlgflGlaLitgs 72 
                  ++l ++g+++ ++                                                    s
  KOO23810.1 168 SMALGLIGIVFIMT----------------------------------------------------S 182
                 44444444444443....................................................3 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (226 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       492  (0.0274416); expected 358.6 (0.02)
Passed bias filter:                      304  (0.0169558); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.43u 0.23s 00:00:00.66 Elapsed: 00:00:00.39
# Mc/sec: 1718.55
//
Query:       KOO23811.1  [L=727]
Description: ankyrin repeat protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.3e-25   87.2   6.8    3.8e-07   30.5   0.1    5.8  6  Ank_4     Ankyrin repeats (many copies)
    6.8e-24   83.6   5.7    4.8e-06   26.7   0.3    6.2  5  Ank_5     Ankyrin repeats (many copies)
    7.4e-24   84.1   8.8    3.6e-11   43.5   0.3    4.8  5  Ank_2     Ankyrin repeats (3 copies)
      1e-18   66.8  11.4     0.0093   16.4   0.2    6.7  6  Ank       Ankyrin repeat
    2.4e-18   64.3   5.6      0.012   16.0   0.1    6.9  6  Ank_3     Ankyrin repeat
    1.2e-05   25.1   0.0    2.5e-05   24.1   0.0    1.6  1  GRIP      GRIP domain


Domain annotation for each model (and alignments):
>> Ank_4  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.6   0.1         6   1.8e+04       2      21 ..      77     100 ..      76     111 .. 0.69
   2 ?    5.1   0.0     0.012        35      28      41 ..     360     373 ..     352     378 .. 0.84
   3 !   11.7   0.0    0.0001      0.31      19      44 ..     385     409 ..     374     417 .. 0.88
   4 !   24.5   0.1     1e-08     3e-05      16      55 .]     442     480 ..     439     480 .. 0.96
   5 !   30.5   0.1   1.3e-10   3.8e-07       3      49 ..     502     547 ..     500     553 .. 0.91
   6 !   14.5   0.0   1.3e-05      0.04      25      55 .]     563     592 ..     548     592 .. 0.80

  Alignments for each domain:
  == domain 1  score: -3.6 bits;  conditional E-value: 6
       Ank_4   2 ltaLhyaai....sgrlelvrlLl 21 
                 ltaL +a++    + r+++++l  
  KOO23811.1  77 LTALEHAVSvereAARTQAAHLAR 100
                 788888888777777777777655 PP

  == domain 2  score: 5.1 bits;  conditional E-value: 0.012
       Ank_4  28 naqdnrsGetalhi 41 
                 +a d+++G+t+lh+
  KOO23811.1 360 HAKDDANGWTLLHF 373
                 56799********9 PP

  == domain 3  score: 11.7 bits;  conditional E-value: 0.0001
       Ank_4  19 lLlekgadinaqdnrsGetalhiAak 44 
                  Ll +gad+ a+ +rs ++alh+Aa+
  KOO23811.1 385 ALLKRGADPEAR-DRSFRSALHMAAL 409
                 6999********.***********96 PP

  == domain 4  score: 24.5 bits;  conditional E-value: 1e-08
       Ank_4  16 lvrlLlekgadinaqdnrsGetalhiAakrgnveilklLl 55 
                 ++r Ll  ga   a+ ++ G+talh+Aa  g+ e++ +Ll
  KOO23811.1 442 TLRTLLKAGARTTAR-DSFGFTALHHAAHAGHTEAVLFLL 480
                 799************.**********************98 PP

  == domain 5  score: 30.5 bits;  conditional E-value: 1.3e-10
       Ank_4   3 taLhyaaisgrlelvrlLlekgadinaqdnrsGetalhiAakrgnve 49 
                 ++Lh aa+ g+  +vrlLle+ga   ++ n  G+t+lh A+++g+  
  KOO23811.1 502 RPLHLAAAGGHATTVRLLLEHGAHTGKT-NYLGQTPLHLACRGGDEP 547
                 68**********************9999.***************854 PP

  == domain 6  score: 14.5 bits;  conditional E-value: 1.3e-05
       Ank_4  25 adinaqdnrsGetalhiAakrgnveilklLl 55 
                 ad+    ++ G t+lh Aa +g+v+++  Ll
  KOO23811.1 563 ADLSNA-DSTGATPLHVAAAGGHVQMVGVLL 592
                 555554.77799***************9987 PP

>> Ank_5  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.3   0.0      0.15   4.5e+02      25      55 ..     341     373 ..     340     374 .. 0.85
   2 !    6.5   0.0    0.0035        10       1      32 [.     386     416 ..     386     418 .. 0.86
   3 !   26.2   0.1   2.3e-09   6.9e-06       1      36 [.     446     480 ..     446     489 .. 0.90
   4 !   26.7   0.3   1.6e-09   4.8e-06       9      56 .]     497     540 ..     491     540 .. 0.89
   5 !   18.9   0.0   4.7e-07    0.0014       8      40 ..     564     597 ..     560     616 .. 0.89

  Alignments for each domain:
  == domain 1  score: 1.3 bits;  conditional E-value: 0.15
       Ank_5  25 kygaadvvrlLl.argadlnltdsrG.ltaldl 55 
                 ++g a+ v+  + a+++ l ++d+ + +t+l++
  KOO23811.1 341 RRGEAPAVLAVVdAFPSLLHAKDDANgWTLLHF 373
                 56778888889999999********99**9986 PP

  == domain 2  score: 6.5 bits;  conditional E-value: 0.0035
       Ank_5   1 LlehgpadvnrldgggntpLhvAakygaadvv 32 
                 Ll++g ad+ ++d+   ++Lh+Aa + a++ v
  KOO23811.1 386 LLKRG-ADPEARDRSFRSALHMAALADAQPEV 416
                 79999.99999999988*******98887765 PP

  == domain 3  score: 26.2 bits;  conditional E-value: 2.3e-09
       Ank_5   1 LlehgpadvnrldgggntpLhvAakygaadvvrlLl 36 
                 Ll++g a++ ++d +g+t+Lh+Aa++g+ + v++Ll
  KOO23811.1 446 LLKAG-ARTTARDSFGFTALHHAAHAGHTEAVLFLL 480
                 89999.****************************** PP

  == domain 4  score: 26.7 bits;  conditional E-value: 1.6e-09
       Ank_5   9 vnrldgggntpLhvAakygaadvvrlLlargadlnltdsrGltaldlA 56 
                 +n+++     pLh+Aa +g+a+ vrlLl++ga+++ t+  G+t+l+lA
  KOO23811.1 497 TNAEE----RPLHLAAAGGHATTVRLLLEHGAHTGKTNYLGQTPLHLA 540
                 34444....9************************************98 PP

  == domain 5  score: 18.9 bits;  conditional E-value: 4.7e-07
       Ank_5   8 dvnrldgggntpLhvAakygaadvvrlLl.arga 40 
                 d+ + d  g tpLhvAa +g+ ++v +Ll arg+
  KOO23811.1 564 DLSNADSTGATPLHVAAAGGHVQMVGVLLhARGV 597
                 6666788999*******************88886 PP

>> Ank_2  Ankyrin repeats (3 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.1   0.6       0.5   1.5e+03      23      65 ..      40      88 ..      27      96 .. 0.58
   2 ?   -3.5   0.0       5.4   1.6e+04      28      40 ..     203     217 ..     199     261 .. 0.51
   3 !   10.6   0.0   0.00021      0.64      15      63 ..     357     410 ..     347     418 .. 0.73
   4 !   43.5   0.3   1.2e-14   3.6e-11      13      81 ..     443     528 ..     437     530 .. 0.80
   5 !   31.4   0.0   7.1e-11   2.1e-07      25      74 ..     532     593 ..     525     600 .. 0.77

  Alignments for each domain:
  == domain 1  score: -0.1 bits;  conditional E-value: 0.5
       Ank_2 23 nkngktaLhyAakngnleiv......klLleh.....adndgrtpLhyAarsgh 65
                n    ta  +Aa     e+v      + ++++     ++++  t+L +A++  +
  KOO23811.1 40 N---ATATATAAAIE--EAVsaarwdERMVAAsarakLEKEHLTALEHAVSVER 88
                4...55555555444..5542223343333324454455888899999996555 PP

  == domain 2  score: -3.5 bits;  conditional E-value: 5.4
       Ank_2  28 taLhyAakng..nle 40 
                 ta  +Aa++g  +++
  KOO23811.1 203 TATLLAAQQGsgSTD 217
                 555566665411333 PP

  == domain 3  score: 10.6 bits;  conditional E-value: 0.00021
       Ank_2  15 lLl.egadpnkngktaLhyAakngnlei.vklLleh......adndgrtpLhyAars 63 
                  Ll ++ d+  ng+t Lh++ +   l + v +Ll+        d++ r++Lh+Aa  
  KOO23811.1 357 SLLhAKDDA--NGWTLLHFFSRLS-LAApVGALLKRgadpeaRDRSFRSALHMAALA 410
                 566455555..5*********985.6667*****96656664558889******976 PP

  == domain 4  score: 43.5 bits;  conditional E-value: 1.2e-14
       Ank_2  13 vklLl.egadpn..k.ngktaLhyAakngnleivklLle.h...........ad.ndgrtpLhyAarsghleivklLlekgadinl 81 
                 ++ Ll +ga+    + +g taLh+Aa++g++e+v +Ll+ +           a+ n  + pLh+Aa  gh  +v+lLle+ga+  +
  KOO23811.1 443 LRTLLkAGARTTarDsFGFTALHHAAHAGHTEAVLFLLSlNtemrlprapleAEtNAEERPLHLAAAGGHATTVRLLLEHGAHTGK 528
                 5678877766555436**********************9624566766675533777889******99*************98765 PP

  == domain 5  score: 31.4 bits;  conditional E-value: 7.1e-11
       Ank_2  25 ngktaLhyAakngnl....eivklLle...h.....adndgrtpLhyAarsghleivklLle 74 
                  g+t+Lh+A+++g++    e+++ +++   +     ad++g tpLh+Aa  gh ++v +Ll 
  KOO23811.1 532 LGQTPLHLACRGGDEpralETAREIVKpewKadlsnADSTGATPLHVAAAGGHVQMVGVLLH 593
                 69**********9654222458888876552567667799*********99*********93 PP

>> Ank  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.6   0.0   0.00043       1.3       1      31 [.     366     397 ..     366     398 .. 0.90
   2 ?    1.8   0.1      0.13   3.8e+02       4      31 ..     402     457 ..     401     458 .. 0.42
   3 !   12.6   0.1   4.9e-05      0.15       2      22 ..     460     480 ..     459     492 .. 0.88
   4 !   14.7   0.2     1e-05     0.031       5      26 ..     503     525 ..     502     530 .. 0.92
   5 !   13.1   0.0   3.3e-05       0.1       2      14 ..     533     545 ..     532     569 .. 0.75
   6 !   16.4   0.2   3.1e-06    0.0093       2      23 ..     572     593 ..     571     597 .. 0.89

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 0.00043
                 TSBBHHHHHHHHTTHHHHHHHH.TTTSTTCBT CS
         Ank   1 dGnTPLHlAatngkkriiklLL.hGAnlnald 31 
                 +G+T LH  ++   +  + +LL +GA++ a+d
  KOO23811.1 366 NGWTLLHFFSRLSLAAPVGALLkRGADPEARD 397
                 7******98988888899****88******99 PP

  == domain 2  score: 1.8 bits;  conditional E-value: 0.13
                 BHHHHHH...........HHTT...............HHHHHH...HH.TTTSTTCBT CS
         Ank   4 TPLHlAa...........tngk...............kriikl...LL.hGAnlnald 31 
                 ++LH+Aa              +               k ii     LL  GA  +a+d
  KOO23811.1 402 SALHMAAladaqpevalaD--GavgasaapiaeadrpKAIIATlrtLLkAGARTTARD 457
                 7999986333333332220..1222223333333344344433133565577666666 PP

  == domain 3  score: 12.6 bits;  conditional E-value: 4.9e-05
                 SBBHHHHHHHHTTHHHHHHHH CS
         Ank   2 GnTPLHlAatngkkriiklLL 22 
                 G+T+LH Aa+ g+++ + +LL
  KOO23811.1 460 GFTALHHAAHAGHTEAVLFLL 480
                 9************98887777 PP

  == domain 4  score: 14.7 bits;  conditional E-value: 1e-05
                 HHHHHHHHTTHHHHHHHH.TTTS CS
         Ank   5 PLHlAatngkkriiklLL.hGAn 26 
                 PLHlAa +g++  ++lLL hGA 
  KOO23811.1 503 PLHLAAAGGHATTVRLLLeHGAH 525
                 9*****9**************96 PP

  == domain 5  score: 13.1 bits;  conditional E-value: 3.3e-05
                 SBBHHHHHHHHTT CS
         Ank   2 GnTPLHlAatngk 14 
                 G TPLHlA+++g+
  KOO23811.1 533 GQTPLHLACRGGD 545
                 99*******8776 PP

  == domain 6  score: 16.4 bits;  conditional E-value: 3.1e-06
                 SBBHHHHHHHHTTHHHHHHHHT CS
         Ank   2 GnTPLHlAatngkkriiklLLh 23 
                 G TPLH+Aa +g+++++  LLh
  KOO23811.1 572 GATPLHVAAAGGHVQMVGVLLH 593
                 78*******9***********5 PP

>> Ank_3  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.7   0.0    0.0046        14       1      30 [.     366     394 ..     366     395 .. 0.92
   2 ?    0.4   0.1      0.52   1.5e+03       3      12 ..     401     410 ..     400     412 .. 0.86
   3 !   16.0   0.1   4.1e-06     0.012       2      23 ..     460     481 ..     459     485 .. 0.91
   4 !   13.5   0.0   2.8e-05     0.084       4      27 ..     502     524 ..     500     527 .. 0.91
   5 !   11.4   0.0   0.00013      0.39       2      16 ..     533     547 ..     532     565 .. 0.80
   6 !   11.6   0.0   0.00011      0.34       2      26 ..     572     596 ..     571     598 .. 0.89

  Alignments for each domain:
  == domain 1  score: 6.7 bits;  conditional E-value: 0.0046
       Ank_3   1 nGetpLhlAarsgnleivkfLlenkgadvn 30 
                 nG+t+Lh+  r    + v +Ll+ +gad+ 
  KOO23811.1 366 NGWTLLHFFSRLSLAAPVGALLK-RGADPE 394
                 7**************88******.9***86 PP

  == domain 2  score: 0.4 bits;  conditional E-value: 0.52
       Ank_3   3 etpLhlAars 12 
                 +++Lh+Aa++
  KOO23811.1 401 RSALHMAALA 410
                 79*****987 PP

  == domain 3  score: 16.0 bits;  conditional E-value: 4.1e-06
       Ank_3   2 GetpLhlAarsgnleivkfLle 23 
                 G t+Lh+Aa++g++e v fLl 
  KOO23811.1 460 GFTALHHAAHAGHTEAVLFLLS 481
                 89******************98 PP

  == domain 4  score: 13.5 bits;  conditional E-value: 2.8e-05
       Ank_3   4 tpLhlAarsgnleivkfLlenkga 27 
                  pLhlAa  g+ + v++Lle +ga
  KOO23811.1 502 RPLHLAAAGGHATTVRLLLE-HGA 524
                 69******************.897 PP

  == domain 5  score: 11.4 bits;  conditional E-value: 0.00013
       Ank_3   2 GetpLhlAarsgnle 16 
                 G+tpLhlA+r g+ +
  KOO23811.1 533 GQTPLHLACRGGDEP 547
                 9*********99875 PP

  == domain 6  score: 11.6 bits;  conditional E-value: 0.00011
       Ank_3   2 GetpLhlAarsgnleivkfLlenkg 26 
                 G tpLh+Aa  g++ +v  Ll  +g
  KOO23811.1 572 GATPLHVAAAGGHVQMVGVLLHARG 596
                 89***************99997665 PP

>> GRIP  GRIP domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.1   0.0   8.3e-09   2.5e-05       1      40 [.     270     308 ..     270     312 .. 0.94

  Alignments for each domain:
  == domain 1  score: 24.1 bits;  conditional E-value: 8.3e-09
        GRIP   1 eanleYLKNVllqFLeskeaserkqLvpVlstlLkfspeE 40 
                 +a++ Y++NVll+ +   +  er  L+pVl++  +f+ +E
  KOO23811.1 270 GADMAYVRNVLLRWFAMTP-TERGTLFPVLAAACAFTQSE 308
                 689****************.*****************998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (727 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1002  (0.0558871); expected 358.6 (0.02)
Passed bias filter:                      354  (0.0197445); expected 358.6 (0.02)
Passed Vit filter:                        49  (0.002733); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.63u 0.30s 00:00:00.93 Elapsed: 00:00:00.43
# Mc/sec: 5098.62
//
Query:       KOO23812.1  [L=103]
Description: hypothetical protein Ctob_006625 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (103 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       379  (0.0211389); expected 358.6 (0.02)
Passed bias filter:                      342  (0.0190752); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.24s 00:00:00.62 Elapsed: 00:00:00.41
# Mc/sec: 751.69
//
Query:       KOO23813.1  [L=250]
Description: integral membrane protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (250 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       450  (0.025099); expected 358.6 (0.02)
Passed bias filter:                      242  (0.0134977); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.40u 0.23s 00:00:00.63 Elapsed: 00:00:00.39
# Mc/sec: 1943.27
//
Query:       KOO23814.1  [L=76]
Description: hypothetical protein Ctob_006619 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (76 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       419  (0.02337); expected 358.6 (0.02)
Passed bias filter:                      283  (0.0157845); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.24s 00:00:00.59 Elapsed: 00:00:00.39
# Mc/sec: 582.55
//
Query:       KOO23815.1  [L=293]
Description: regulator of microtubule dynamics protein 1 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    8.8e-08   32.6   3.2      0.003   18.0   0.2    3.7  3  TPR_19    Tetratricopeptide repeat
    5.6e-06   26.1   5.6        1.1    9.5   0.1    5.2  5  TPR_2     Tetratricopeptide repeat
    9.5e-06   25.4   1.1        1.1    9.7   0.0    4.8  5  TPR_8     Tetratricopeptide repeat
    0.00039   20.6   0.1        0.4   11.2   0.0    3.6  3  TPR_17    Tetratricopeptide repeat
     0.0008   19.0   0.0       0.54   10.0   0.0    3.9  4  TPR_11    TPR repeat
     0.0019   17.9   2.2         17    5.4   0.0    4.2  4  TPR_1     Tetratricopeptide repeat
     0.0048   17.6  23.4       0.06   14.2   1.9    5.5  6  TPR_14    Tetratricopeptide repeat
     0.0068   16.4   1.9       0.65   10.2   0.1    4.2  5  TPR_7     Tetratricopeptide repeat
  ------ inclusion threshold ------
      0.011   15.7   0.0        4.3    7.3   0.0    2.1  2  DUF4919   Domain of unknown function (DUF4919)
        0.7   10.2   5.0        7.7    6.9   2.4    3.5  3  TPR_12    Tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> TPR_19  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.6   0.4   0.00034      0.62      12      42 ..      87     117 ..      76     142 .. 0.86
   2 ?    1.7   0.0      0.21   3.8e+02      12      31 ..     177     196 ..     175     200 .. 0.86
   3 !   18.0   0.2   1.7e-06     0.003       7      56 ..     226     276 ..     224     280 .. 0.88

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00034
      TPR_19  12 alleqalqedpknaearllLAeallalgqld 42 
                  ll++ l+++p++ e++ +LA+++ +l + +
  KOO23815.1  87 TLLRASLAKAPDDTELLWRLARVCKKLADEE 117
                 689999******************9997766 PP

  == domain 2  score: 1.7 bits;  conditional E-value: 0.21
      TPR_19  12 alleqalqedpknaearllL 31 
                 a++e+a + +pk+a  r lL
  KOO23815.1 177 AHFEKAVELSPKDATSRHLL 196
                 79***********9877655 PP

  == domain 3  score: 18.0 bits;  conditional E-value: 1.7e-06
      TPR_19   7 yaeAlalleqalqedpk.naearllLAeallalgqldeAealLdalpeedp 56 
                 ++eAl ++e+a + dp+ ++  +ll+A a+ +lg+ +eAe+  ++ ++++p
  KOO23815.1 226 FEEALGHFEAAEAIDPGfYPKNLLLMAMAHAKLGHKAEAEQWRQRCLAAKP 276
                 79****************9*********************97666666555 PP

>> TPR_2  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.0       1.3   2.4e+03       2      18 ..     101     117 ..     100     128 .. 0.76
   2 ?   -0.6   0.1         1   1.9e+03      25      33 ..     136     144 ..     136     145 .. 0.88
   3 !    6.7   0.0    0.0049       8.7      21      34 .]     176     189 ..     176     189 .. 0.90
   4 !    7.7   0.0    0.0024       4.3      17      33 ..     226     242 ..     226     243 .. 0.93
   5 !    9.5   0.1   0.00063       1.1       4      32 ..     248     276 ..     245     278 .. 0.85

  Alignments for each domain:
  == domain 1  score: -0.9 bits;  conditional E-value: 1.3
       TPR_2   2 ealynlGlayyklgdye 18 
                 e+l++l++++ kl d e
  KOO23815.1 101 ELLWRLARVCKKLADEE 117
                 67899999999886655 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 1
       TPR_2  25 ekAleldPn 33 
                 e+Al+l P+
  KOO23815.1 136 ERALALKPD 144
                 79*****98 PP

  == domain 3  score: 6.7 bits;  conditional E-value: 0.0049
       TPR_2  21 leafekAleldPnn 34 
                 +++fekA+el P++
  KOO23815.1 176 RAHFEKAVELSPKD 189
                 589*********86 PP

  == domain 4  score: 7.7 bits;  conditional E-value: 0.0024
       TPR_2  17 yeeAleafekAleldPn 33 
                 +eeAl +fe+A ++dP+
  KOO23815.1 226 FEEALGHFEAAEAIDPG 242
                 79**************7 PP

  == domain 5  score: 9.5 bits;  conditional E-value: 0.00063
       TPR_2   4 lynlGlayyklgdyeeAleafekAleldP 32 
                 l  +++a++klg+ +eA+++ +++l+  P
  KOO23815.1 248 LLLMAMAHAKLGHKAEAEQWRQRCLAAKP 276
                 6789**************99888887766 PP

>> TPR_8  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.2   0.0     0.035        62       2      28 ..     101     127 ..     100     127 .. 0.91
   2 ?    0.4   0.0      0.58     1e+03      20      34 .]     131     145 ..     128     145 .. 0.83
   3 ?    5.2   0.0     0.016        29      22      34 .]     177     189 ..     176     189 .. 0.88
   4 ?   -1.2   0.0       1.8   3.3e+03      13      22 ..     229     238 ..     226     241 .. 0.75
   5 !    9.7   0.0    0.0006       1.1       4      32 ..     248     276 ..     245     278 .. 0.90

  Alignments for each domain:
  == domain 1  score: 4.2 bits;  conditional E-value: 0.035
                 CHHHHHHHHHHHTT-HHHHHHHHHHHH CS
       TPR_8   2 eayynlgsiylklgdyeeAkeyyekal 28 
                 e++++l+++++kl d e+ k++ ++al
  KOO23815.1 101 ELLWRLARVCKKLADEEKPKSAAKQAL 127
                 6789**************999999997 PP

  == domain 2  score: 0.4 bits;  conditional E-value: 0.58
                 HHHHHHHHHHHHHH. CS
       TPR_8  20 Akeyyekaleldpdn 34 
                  +++ e+al l+pd+
  KOO23815.1 131 GVQSSERALALKPDC 145
                 577889*******96 PP

  == domain 3  score: 5.2 bits;  conditional E-value: 0.016
                 HHHHHHHHHHHH. CS
       TPR_8  22 eyyekaleldpdn 34 
                 + +eka+el+p++
  KOO23815.1 177 AHFEKAVELSPKD 189
                 579********96 PP

  == domain 4  score: -1.2 bits;  conditional E-value: 1.8
                 HTT-HHHHHH CS
       TPR_8  13 klgdyeeAke 22 
                  lg +e+A++
  KOO23815.1 229 ALGHFEAAEA 238
                 5788888876 PP

  == domain 5  score: 9.7 bits;  conditional E-value: 0.0006
                 HHHHHHHHHHTT-HHHHHHHHHHHHHHHH CS
       TPR_8   4 yynlgsiylklgdyeeAkeyyekaleldp 32 
                 ++++++++ klg + eA+++ +++l ++p
  KOO23815.1 248 LLLMAMAHAKLGHKAEAEQWRQRCLAAKP 276
                 6899****************999999988 PP

>> TPR_17  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.3   0.0      0.65   1.2e+03       2      26 ..      89     113 ..      88     122 .. 0.81
   2 !   11.2   0.0   0.00022       0.4       2      20 ..     179     197 ..     178     212 .. 0.92
   3 ?    4.3   0.0     0.035        62       8      34 .]     239     266 ..     232     266 .. 0.84

  Alignments for each domain:
  == domain 1  score: 0.3 bits;  conditional E-value: 0.65
      TPR_17   2 ylkaleldPnnadaynnLAelllkn 26 
                 ++ +l++ P++ +++  LA++ +k+
  KOO23815.1  89 LRASLAKAPDDTELLWRLARVCKKL 113
                 57899999***99998888887766 PP

  == domain 2  score: 11.2 bits;  conditional E-value: 0.00022
      TPR_17   2 ylkaleldPnnadaynnLA 20 
                 ++ka+el P++a + ++L+
  KOO23815.1 179 FEKAVELSPKDATSRHLLG 197
                 9*****************9 PP

  == domain 3  score: 4.3 bits;  conditional E-value: 0.035
      TPR_17   8 ldPn.nadaynnLAelllknGdlmtArq 34 
                 +dP  +++ + ++A +++k+G +++A+q
  KOO23815.1 239 IDPGfYPKNLLLMAMAHAKLGHKAEAEQ 266
                 47774599999***************98 PP

>> TPR_11  TPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.8   0.0      0.22   3.9e+02       2      37 ..      74     109 ..      73     113 .. 0.78
   2 ?   -1.2   0.1      0.94   1.7e+03      19      26 ..     137     144 ..     136     144 .. 0.89
   3 !   10.0   0.0    0.0003      0.54      15      36 ..     177     198 ..     176     201 .. 0.92
   4 ?    2.5   0.0     0.068   1.2e+02      10      25 ..     226     241 ..     225     245 .. 0.94

  Alignments for each domain:
  == domain 1  score: 0.8 bits;  conditional E-value: 0.22
      TPR_11   2 dayyeqGkyeeAieaYkkAlkldPdnaeayynLGla 37 
                 d +++ ++ye   + +++ l+  Pd+ e+++ L+ +
  KOO23815.1  74 DRLFDANQYEPLATLLRASLAKAPDDTELLWRLARV 109
                 788999999987888888888888888888888755 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 0.94
      TPR_11  19 kAlkldPd 26 
                 +Al+l+Pd
  KOO23815.1 137 RALALKPD 144
                 8******8 PP

  == domain 3  score: 10.0 bits;  conditional E-value: 0.0003
      TPR_11  15 eaYkkAlkldPdnaeayynLGl 36 
                 ++++kA++l+P++a+  + LGl
  KOO23815.1 177 AHFEKAVELSPKDATSRHLLGL 198
                 5789****************96 PP

  == domain 4  score: 2.5 bits;  conditional E-value: 0.068
      TPR_11  10 yeeAieaYkkAlkldP 25 
                 +eeA+ ++++A ++dP
  KOO23815.1 226 FEEALGHFEAAEAIDP 241
                 79*************9 PP

>> TPR_1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.6   0.0      0.33   5.9e+02      25      34 .]     136     145 ..     136     145 .. 0.90
   2 !    5.4   0.0    0.0094        17      22      34 .]     177     189 ..     176     189 .. 0.90
   3 ?    4.8   0.0     0.015        27      17      34 .]     226     243 ..     226     243 .. 0.93
   4 ?    3.3   0.1     0.044        78       6      29 ..     250     273 ..     246     277 .. 0.81

  Alignments for each domain:
  == domain 1  score: 0.6 bits;  conditional E-value: 0.33
                 HHHHHHSTTH CS
       TPR_1  25 ekALelnPnn 34 
                 e+AL l P++
  KOO23815.1 136 ERALALKPDC 145
                 79******96 PP

  == domain 2  score: 5.4 bits;  conditional E-value: 0.0094
                 HHHHHHHHHSTTH CS
       TPR_1  22 eyyekALelnPnn 34 
                 +++ekA+el P++
  KOO23815.1 177 AHFEKAVELSPKD 189
                 69*********86 PP

  == domain 3  score: 4.8 bits;  conditional E-value: 0.015
                 HHHHHHHHHHHHHHSTTH CS
       TPR_1  17 ydeAleyyekALelnPnn 34 
                 ++eAl ++e A  ++P +
  KOO23815.1 226 FEEALGHFEAAEAIDPGF 243
                 89**************75 PP

  == domain 4  score: 3.3 bits;  conditional E-value: 0.044
                 HHHHHHHHTT-HHHHHHHHHHHHH CS
       TPR_1   6 nlGnayfklgkydeAleyyekALe 29 
                  +++a+ klg   eA++  +++L 
  KOO23815.1 250 LMAMAHAKLGHKAEAEQWRQRCLA 273
                 689************997666665 PP

>> TPR_14  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.4       8.3   1.5e+04      24      29 ..      46      51 ..      42      59 .. 0.44
   2 !   14.2   1.9   3.4e-05      0.06       9      43 ..      74     108 ..      71     109 .. 0.91
   3 ?   -1.1   0.0       2.7   4.8e+03      18      34 ..     129     145 ..     121     155 .. 0.74
   4 ?    4.4   0.0     0.046        83      21      42 ..     176     197 ..     175     198 .. 0.88
   5 ?    5.6   0.1     0.019        35      15      33 ..     224     242 ..     208     246 .. 0.73
   6 ?    6.4   0.6     0.011        19       4      35 ..     248     279 ..     245     288 .. 0.79

  Alignments for each domain:
  == domain 1  score: -2.6 bits;  conditional E-value: 8.3
      TPR_14 24 lrrala 29
                l +a a
  KOO23815.1 46 LAAAAA 51
                222222 PP

  == domain 2  score: 14.2 bits;  conditional E-value: 3.4e-05
      TPR_14   9 eallalGdpdeAiallrralalaPddaeawlllaq 43 
                 + l+ + +++  ++llr+ la+aPdd e++ +la+
  KOO23815.1  74 DRLFDANQYEPLATLLRASLAKAPDDTELLWRLAR 108
                 5688999**********************999998 PP

  == domain 3  score: -1.1 bits;  conditional E-value: 2.7
      TPR_14  18 deAiallrralalaPdd 34 
                 +e ++  +ralal Pd 
  KOO23815.1 129 REGVQSSERALALKPDC 145
                 56666778999998885 PP

  == domain 4  score: 4.4 bits;  conditional E-value: 0.046
      TPR_14  21 iallrralalaPddaeawllla 42 
                 +a++++a++l P+da+ + ll+
  KOO23815.1 176 RAHFEKAVELSPKDATSRHLLG 197
                 579************9888876 PP

  == domain 5  score: 5.6 bits;  conditional E-value: 0.019
      TPR_14  15 GdpdeAiallrralalaPd 33 
                   ++eA+ ++++a a +P+
  KOO23815.1 224 ATFEEALGHFEAAEAIDPG 242
                 5799**********99997 PP

  == domain 6  score: 6.4 bits;  conditional E-value: 0.011
      TPR_14   4 llalaeallalGdpdeAiallrralalaPdda 35 
                 ll++a a++ lG  +eA++  +r+la+ P  +
  KOO23815.1 248 LLLMAMAHAKLGHKAEAEQWRQRCLAAKPRTP 279
                 7899**********************655433 PP

>> TPR_7  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.9   0.0      0.33   5.9e+02      11      33 ..      78     100 ..      76     103 .. 0.78
   2 ?   -1.7   0.0       2.3   4.1e+03       2      14 ..     103     115 ..     102     117 .. 0.81
   3 ?   -2.2   0.0       3.3   5.9e+03      14      21 ..     178     185 ..     177     190 .. 0.67
   4 ?    0.1   0.0      0.59   1.1e+03      15      27 ..     226     236 ..     225     242 .. 0.71
   5 !   10.2   0.1   0.00036      0.65       2      33 ..     248     280 ..     248     283 .. 0.83

  Alignments for each domain:
  == domain 1  score: 0.9 bits;  conditional E-value: 0.33
       TPR_7  11 rlGdyeeAielyeqsLaltkdpe 33 
                 + ++ye +++l+++sLa + d++
  KOO23815.1  78 DANQYEPLATLLRASLAKAPDDT 100
                 56889999******887776665 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 2.3
       TPR_7   2 LlnLarlysrlGd 14 
                 L +Lar++ +l d
  KOO23815.1 103 LWRLARVCKKLAD 115
                 6789999998866 PP

  == domain 3  score: -2.2 bits;  conditional E-value: 3.3
       TPR_7  14 dyeeAiel 21 
                 ++e+A+el
  KOO23815.1 178 HFEKAVEL 185
                 46777764 PP

  == domain 4  score: 0.1 bits;  conditional E-value: 0.59
       TPR_7  15 yeeAielyeqsLa 27 
                 +eeA++++e+  a
  KOO23815.1 226 FEEALGHFEA--A 236
                 6788888887..4 PP

  == domain 5  score: 10.2 bits;  conditional E-value: 0.00036
       TPR_7   2 LlnLarlysrlGdyeeAielyeqsL.altkdpe 33 
                 Ll +a ++ +lG+ +eA++  +++L a  + pe
  KOO23815.1 248 LLLMAMAHAKLGHKAEAEQWRQRCLaAKPRTPE 280
                 7899*******************9955445555 PP

>> DUF4919  Domain of unknown function (DUF4919)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.4   0.0    0.0044       7.9      63     116 ..      72     125 ..      56     134 .. 0.86
   2 ?    7.3   0.0    0.0024       4.3      72     117 ..     225     271 ..     210     274 .. 0.80

  Alignments for each domain:
  == domain 1  score: 6.4 bits;  conditional E-value: 0.0044
     DUF4919  63 ldkkelseeelkeiislaeealkknPfdlkqlnllayaykalgkkeeakiyskr 116
                 ++ +  ++++++ + +l +++l+k P d + l  la + k+l ++e+ k+ +k+
  KOO23815.1  72 EADRLFDANQYEPLATLLRASLAKAPDDTELLWRLARVCKKLADEEKPKSAAKQ 125
                 5566788999***********************************999988776 PP

  == domain 2  score: 7.3 bits;  conditional E-value: 0.0024
     DUF4919  72 elkeiislaeealkknP.fdlkqlnllayaykalgkkeeakiyskrl 117
                 +++e++   e+a + +P f +k+l l+a+a+ +lg+k ea+++ +r 
  KOO23815.1 225 TFEEALGHFEAAEAIDPgFYPKNLLLMAMAHAKLGHKAEAEQWRQRC 271
                 566666666666666666999**********************9985 PP

>> TPR_12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.0       3.1   5.5e+03      46      62 ..     101     117 ..      87     127 .. 0.65
   2 ?    0.9   0.0      0.31   5.5e+02      25      56 ..     178     201 ..     176     206 .. 0.65
   3 ?    6.9   2.4    0.0043       7.7      47      75 ..     247     275 ..     224     277 .. 0.74

  Alignments for each domain:
  == domain 1  score: -2.3 bits;  conditional E-value: 3.1
      TPR_12  46 ttlrnLgrlyralgrye 62 
                 + l  L+r++ +l + e
  KOO23815.1 101 ELLWRLARVCKKLADEE 117
                 45666777776666655 PP

  == domain 2  score: 0.9 bits;  conditional E-value: 0.31
      TPR_12  25 llekaleiarrllGpdhpltattlrnLgrlyr 56 
                 ++eka+e+      p     at+++ Lg +++
  KOO23815.1 178 HFEKAVELS-----P---KDATSRHLLGLWCF 201
                 555555555.....4...46888888888876 PP

  == domain 3  score: 6.9 bits;  conditional E-value: 0.0043
      TPR_12  47 tlrnLgrlyralgryeeAlelleealaia 75 
                  l  +++++ +lg+ +eA+++ +++la++
  KOO23815.1 247 NLLLMAMAHAKLGHKAEAEQWRQRCLAAK 275
                 58899*********************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (293 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       638  (0.0355848); expected 358.6 (0.02)
Passed bias filter:                      361  (0.020135); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.45u 0.29s 00:00:00.74 Elapsed: 00:00:00.42
# Mc/sec: 2075.90
//
Query:       KOO23816.1  [L=132]
Description: ctp transferase 1 domain-containing protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
  ------ inclusion threshold ------
       0.12   12.7   3.6        0.5   10.7   0.1    2.7  3  Transgly_assoc  Transglycosylase associated protein


Domain annotation for each model (and alignments):
>> Transgly_assoc  Transglycosylase associated protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.1   2.8e-05       0.5       6      38 ..      50      82 ..      50      89 .. 0.85
   2 ?   -1.5   0.0      0.18   3.1e+03      13      30 ..      83      97 ..      80     105 .. 0.72
   3 ?    2.1   0.5     0.013   2.4e+02       8      32 ..     106     131 ..     106     132 .] 0.75

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 2.8e-05
  Transgly_assoc  6 vGAfvGgfllgllgigvgggelaslivaiiGAi 38
                    +GA+vG +  +llg+++++ + +s  va   A+
      KOO23816.1 50 AGAVVGKACSQLLGPSYNPAWYGSKTVAGTAAV 82
                    5**************999999998877766665 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 0.18
  Transgly_assoc 13 fllgllgigvgggelasl 30
                    f++ +l i   +++l+++
      KOO23816.1 83 FIFTFLSI---TFDLSTF 97
                    78888888...6666555 PP

  == domain 3  score: 2.1 bits;  conditional E-value: 0.013
  Transgly_assoc   8 AfvGgfllgllgi.gvgggelasliv 32 
                     A v+++l+g +   + ++  l++++ 
      KOO23816.1 106 AAVAEALGGEFDNlAIAAVVLGGWLL 131
                     67888888888888888888888765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (132 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       460  (0.0256568); expected 358.6 (0.02)
Passed bias filter:                      282  (0.0157287); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.24s 00:00:00.61 Elapsed: 00:00:00.38
# Mc/sec: 1028.34
//
Query:       KOO23817.1  [L=224]
Description: hypothetical protein Ctob_006614 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.18   11.6   0.1       0.55   10.0   0.0    1.8  2  MerR      MerR family regulatory protein


Domain annotation for each model (and alignments):
>> MerR  MerR family regulatory protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.0      0.45     8e+03      21      33 ..       8      20 ..       8      22 .. 0.67
   2 ?   10.0   0.0   3.1e-05      0.55      14      28 ..     131     144 ..     130     146 .. 0.84

  Alignments for each domain:
  == domain 1  score: -3.3 bits;  conditional E-value: 0.45
                HTTSSTSEEETTT CS
        MerR 21 reGLipppeRteg 33
                ++G i p+ R ++
  KOO23817.1  8 KRGAIEPAKRQAS 20
                5788977777665 PP

  == domain 2  score: 10.0 bits;  conditional E-value: 3.1e-05
                 HHHHHHHHTTSSTSE CS
        MerR  14 rtLRyYEreGLippp 28 
                 r LR+Y+r+GL  +p
  KOO23817.1 131 RNLRHYDRQGLH-AP 144
                 67*********8.55 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (224 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       325  (0.0181271); expected 358.6 (0.02)
Passed bias filter:                      251  (0.0139997); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.23s 00:00:00.62 Elapsed: 00:00:00.40
# Mc/sec: 1697.12
//
Query:       KOO23818.1  [L=84]
Description: hypothetical protein Ctob_006617 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (84 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       482  (0.0268838); expected 358.6 (0.02)
Passed bias filter:                      236  (0.013163); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.22s 00:00:00.56 Elapsed: 00:00:00.37
# Mc/sec: 675.49
//
Query:       KOO23819.1  [L=214]
Description: u-box domain-containing protein 33-like protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.7e-21   74.2   0.0    1.2e-20   73.4   0.0    1.4  1  U-box     U-box domain
  ------ inclusion threshold ------
       0.19   11.8   0.0       0.31   11.2   0.0    1.3  1  zf-NOSIP  Zinc-finger of nitric oxide synthase-interacting pr


Domain annotation for each model (and alignments):
>> U-box  U-box domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   73.4   0.0   1.4e-24   1.2e-20       1      70 [.     133     201 ..     133     202 .. 0.98

  Alignments for each domain:
  == domain 1  score: 73.4 bits;  conditional E-value: 1.4e-24
                 SSGGGB-TTT-SB-SSEEEETTTEEEEHHHHHHHHTT.SSB-TTT-SB--GGGSEE-HHHHHHHHHHHHH CS
       U-box   1 iPdefldpitlelmkdPvilpsgvvvdrstiekhllsrdktdPftrepltqdqlipnlelKekIdeflee 70 
                 +Pd+fl+pit  +m++P ++p+gv++d  +i+++l + +ktdP t+ pl+ ++l pn++++ +I+ f+++
  KOO23819.1 133 VPDYFLCPITGCIMRQPAMTPDGVTYDYDAITEWLSN-KKTDPSTNLPLDASELCPNRTVRSMIEDFIAK 201
                 8************************************.*****************************975 PP

>> zf-NOSIP  Zinc-finger of nitric oxide synthase-interacting protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   3.4e-05      0.31      37      73 ..     133     169 ..     127     171 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 3.4e-05
    zf-NOSIP  37 vkdfdccslslqacrdpvltedgylyekeaileyilh 73 
                 v d+  c ++    r+p +t+dg  y+ +ai e++  
  KOO23819.1 133 VPDYFLCPITGCIMRQPAMTPDGVTYDYDAITEWLSN 169
                 56777788888889*****************998765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (214 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       261  (0.0145574); expected 358.6 (0.02)
Passed bias filter:                      247  (0.0137766); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.35u 0.23s 00:00:00.57 Elapsed: 00:00:00.35
# Mc/sec: 1823.92
//
Query:       KOO23820.1  [L=326]
Description: hypothetical protein Ctob_006613 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    0.00029   20.4   6.1        3.5    7.3   0.2    4.8  5  40S_S4_C        40S ribosomal protein S4 C-terminus
    0.00048   20.2   0.0          3    8.0   0.0    4.1  5  DUF5026         Domain of unknown function (DUF5026)
  ------ inclusion threshold ------
      0.077   12.9   0.7         35    4.3   0.0    3.7  4  Dehydratase_MU  Dehydratase medium subunit


Domain annotation for each model (and alignments):
>> 40S_S4_C  40S ribosomal protein S4 C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.8   0.0     0.065   3.9e+02      29      40 ..      37      48 ..      29      53 .. 0.83
   2 !    4.9   0.0    0.0033        20      17      46 ..      68      96 ..      66      97 .. 0.85
   3 !    7.3   0.2   0.00059       3.5      30      46 ..     122     138 ..     115     139 .. 0.89
   4 ?   -1.3   0.1      0.28   1.7e+03      33      46 ..     167     180 ..     165     181 .. 0.87
   5 !    5.7   0.1     0.002        12      29      46 ..     205     222 ..     200     223 .. 0.89

  Alignments for each domain:
  == domain 1  score: 0.8 bits;  conditional E-value: 0.065
                SS-S----HHHH CS
    40S_S4_C 29 kgkGiklsiaee 40
                +g G+++ iae 
  KOO23820.1 37 RGEGVRMPIAER 48
                799*******95 PP

  == domain 2  score: 4.9 bits;  conditional E-value: 0.0033
                --STTS-SS---SS-S----HHHHHHHHHH CS
    40S_S4_C 17 IGkgnkpwvsLPkgkGiklsiaeerdkrla 46
                +G++++p++   +g  +++ iae r +rl+
  KOO23820.1 68 LGQQQQPQII-NRGECVRMPIAERRTARLE 96
                5888888884.6999*************96 PP

  == domain 3  score: 7.3 bits;  conditional E-value: 0.00059
                 S-S----HHHHHHHHHH CS
    40S_S4_C  30 gkGiklsiaeerdkrla 46 
                   G++++iae r +rl+
  KOO23820.1 122 AEGVRMTIAERRTARLE 138
                 57*************96 PP

  == domain 4  score: -1.3 bits;  conditional E-value: 0.28
                 ----HHHHHHHHHH CS
    40S_S4_C  33 iklsiaeerdkrla 46 
                 +++ +ae r +rl+
  KOO23820.1 167 VRMPVAERRTARLE 180
                 78999*****9986 PP

  == domain 5  score: 5.7 bits;  conditional E-value: 0.002
                 SS-S----HHHHHHHHHH CS
    40S_S4_C  29 kgkGiklsiaeerdkrla 46 
                 ++ G+++ iae r  rl+
  KOO23820.1 205 RDEGVRMPIAERRTHRLE 222
                 689*************96 PP

>> DUF5026  Domain of unknown function (DUF5026)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.0   0.0    0.0005         3      41      73 ..      23      55 ..      18      64 .. 0.87
   2 ?   -0.9   0.0       0.3   1.8e+03      46      70 ..      70      94 ..      61     100 .. 0.82
   3 ?    1.3   0.0     0.062   3.7e+02      41      70 ..     107     136 ..      99     144 .. 0.85
   4 !    4.5   0.0     0.006        36      41      71 ..     149     179 ..     144     187 .. 0.86
   5 ?   -1.5   0.0      0.47   2.8e+03      41      65 ..     191     215 ..     183     222 .. 0.82

  Alignments for each domain:
  == domain 1  score: 8.0 bits;  conditional E-value: 0.0005
     DUF5026 41 ekelivqyhpGianvtnhfrlpidevvdaewev 73
                e  l++q hp i+n  +  r+pi e   a  ev
  KOO23820.1 23 ELALVMQQHPQITNRGEGVRMPIAERHTACLEV 55
                56799*******************998887776 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 0.3
     DUF5026 46 vqyhpGianvtnhfrlpidevvdae 70
                 q  p i n  +  r+pi e   a+
  KOO23820.1 70 QQQQPQIINRGECVRMPIAERRTAR 94
                6889999***********9987766 PP

  == domain 3  score: 1.3 bits;  conditional E-value: 0.062
     DUF5026  41 ekelivqyhpGianvtnhfrlpidevvdae 70 
                 e  l+vq  p i n ++  r+ i e   a+
  KOO23820.1 107 ELALVVQQRPQIINRAEGVRMTIAERRTAR 136
                 56799***********99999999877665 PP

  == domain 4  score: 4.5 bits;  conditional E-value: 0.006
     DUF5026  41 ekelivqyhpGianvtnhfrlpidevvdaew 71 
                 e  l+vq  p i+n  +  r+p+ e   a+ 
  KOO23820.1 149 ELALVVQQRPQITNRFECVRMPVAERRTARL 179
                 56799******************99877765 PP

  == domain 5  score: -1.5 bits;  conditional E-value: 0.47
     DUF5026  41 ekelivqyhpGianvtnhfrlpide 65 
                 e  l+vq  p i    +  r+pi e
  KOO23820.1 191 ELALVVQQLPQIIHRDEGVRMPIAE 215
                 5678999999999999999999987 PP

>> Dehydratase_MU  Dehydratase medium subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.1   0.0     0.061   3.6e+02      27      57 ..      39      69 ..      37      77 .. 0.88
   2 ?   -3.2   0.0       1.3   7.8e+03      33      52 ..      87     106 ..      81     113 .. 0.65
   3 ?    2.7   0.0     0.019   1.1e+02      27      54 ..     123     150 ..     120     159 .. 0.89
   4 ?    4.3   0.0    0.0058        35      26      58 ..     206     238 ..     193     268 .. 0.85

  Alignments for each domain:
  == domain 1  score: 1.1 bits;  conditional E-value: 0.061
  Dehydratase_MU 27 egvpyevvveetsdvaelAhqAaklSrlgvG 57
                    egv + + +++t+ ++ lA q a+l +l  G
      KOO23820.1 39 EGVRMPIAERHTACLEVLAVQHARLVELALG 69
                    89999999*************9998877665 PP

  == domain 2  score: -3.2 bits;  conditional E-value: 1.3
  Dehydratase_MU  33 vvveetsdvaelAhqAaklS 52 
                     + +++t+ +++lA q a+l 
      KOO23820.1  87 IAERRTARLERLAIQHARLV 106
                     55667777777777777655 PP

  == domain 3  score: 2.7 bits;  conditional E-value: 0.019
  Dehydratase_MU  27 egvpyevvveetsdvaelAhqAaklSrl 54 
                     egv +++ +++t+ +++lA q a+l +l
      KOO23820.1 123 EGVRMTIAERRTARLERLAEQHARLVEL 150
                     9********************9998666 PP

  == domain 4  score: 4.3 bits;  conditional E-value: 0.0058
  Dehydratase_MU  26 EegvpyevvveetsdvaelAhqAaklSrlgvGi 58 
                     +egv + + +++t  +++lA q a+l +l  G+
      KOO23820.1 206 DEGVRMPIAERRTHRLERLAEQHARLVELALGL 238
                     69***********************98887765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (326 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       599  (0.0334096); expected 358.6 (0.02)
Passed bias filter:                      238  (0.0132746); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.46u 0.29s 00:00:00.75 Elapsed: 00:00:00.43
# Mc/sec: 2254.84
//
Query:       KOO23821.1  [L=557]
Description: transcriptional regulator, partial [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.2e-84  275.3  42.9    2.3e-12   46.3   0.1   10.7 11  TPR_10    Tetratricopeptide repeat
    4.9e-84  276.7  56.8    1.8e-16   60.1   1.9    8.7  9  TPR_12    Tetratricopeptide repeat
    6.4e-33  114.5  22.0    5.2e-16   59.0   6.4    3.6  3  TPR_MalT  MalT-like TPR region
    4.3e-25   85.8  10.3      0.001   19.1   0.0    9.1  9  TPR_8     Tetratricopeptide repeat
    1.4e-24   84.9  14.2    0.00083   19.1   0.0    8.4  8  TPR_1     Tetratricopeptide repeat
    1.2e-21   75.1  24.2      0.028   14.5   0.1    9.4  9  TPR_2     Tetratricopeptide repeat
    1.3e-20   71.8  48.6      0.065   13.9   1.4   11.4 10  TPR_4     Tetratricopeptide repeat
    1.8e-14   52.6  35.8      0.035   14.1   0.1    8.8  9  TPR_7     Tetratricopeptide repeat
    9.6e-14   50.7   2.0          2    9.0   0.0    8.7  8  TPR_17    Tetratricopeptide repeat
      8e-13   47.8  17.5      0.019   14.6   0.0    8.8  9  TPR_11    TPR repeat
    1.3e-12   48.1  34.1      0.071   13.8   0.5    9.2  8  TPR_16    Tetratricopeptide repeat
    2.1e-11   44.2  33.7     0.0059   17.1   0.5    7.2  7  TPR_19    Tetratricopeptide repeat
    7.9e-10   38.8   8.4        4.6    7.6   0.0    8.6  9  Osmo_CC   Osmosensory transporter coiled coil
      4e-09   36.3   0.0        6.5    6.9   0.0    7.7  8  TPR_3     Tetratricopeptide repeat
    4.6e-08   33.2  42.5        1.3   10.1   1.4   10.2 10  TPR_14    Tetratricopeptide repeat
    0.00053   19.8  15.7        0.4   10.4   1.3    6.6  5  TPR_21    Tetratricopeptide repeat-like domain
      0.003   17.8   0.0        5.2    7.4   0.0    4.4  5  GP44      Gene product 44
  ------ inclusion threshold ------
      0.016   14.9   0.1         50    3.4   0.0    4.0  4  Sec16_C   Sec23-binding domain of Sec16
       0.93   10.1  27.2        1.3    9.5   1.5    7.6  9  HisKA_3   Histidine kinase
        9.5    7.1  23.1         63    4.5   0.4    8.6  8  TPR_6     Tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> TPR_10  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.1   0.7   1.6e-10   1.4e-07       5      42 .]     113     150 ..     109     150 .. 0.94
   2 !   41.8   0.2     7e-14   6.3e-11       1      42 []     151     192 ..     151     192 .. 0.98
   3 !   37.9   0.1   1.1e-12     1e-09       1      42 []     193     234 ..     193     234 .. 0.98
   4 !   46.3   0.1   2.6e-15   2.3e-12       1      42 []     235     276 ..     235     276 .. 0.99
   5 !   37.4   0.1   1.7e-12   1.5e-09       1      42 []     277     318 ..     277     318 .. 0.99
   6 !   38.1   0.1     1e-12   9.3e-10       1      41 [.     319     359 ..     319     360 .. 0.98
   7 !   34.5   0.1   1.4e-11   1.3e-08       1      42 []     361     402 ..     361     402 .. 0.98
   8 !   16.9   0.4   4.8e-06    0.0043       2      35 ..     404     437 ..     403     442 .. 0.85
   9 !   13.7   0.4   4.9e-05     0.044       2      38 ..     446     483 ..     445     484 .. 0.95
  10 ?    3.2   0.0     0.098        88      24      42 .]     508     526 ..     506     526 .. 0.85
  11 ?   -1.1   0.1       2.2     2e+03      21      38 ..     533     550 ..     527     551 .. 0.82

  Alignments for each domain:
  == domain 1  score: 31.1 bits;  conditional E-value: 1.6e-10
      TPR_10   5 lnNLanalrqrgrydeAealleealairrrllGpdHPd 42 
                 +  L+++l+++g++deA  ll+eal++ r++lG+ HP+
  KOO23821.1 113 QDRLGRLLQAQGKLDEAGVLLREALEAMRATLGDRHPH 150
                 678**********************************6 PP

  == domain 2  score: 41.8 bits;  conditional E-value: 7e-14
      TPR_10   1 tAsslnNLanalrqrgrydeAealleealairrrllGpdHPd 42 
                 t+ s+ NL+ +l+++g++deA  l++eal++ r++lG+ HPd
  KOO23821.1 151 TLVSMDNLGELLHDQGQLDEAGVLYREALEASRATLGDRHPD 192
                 789**************************************9 PP

  == domain 3  score: 37.9 bits;  conditional E-value: 1.1e-12
      TPR_10   1 tAsslnNLanalrqrgrydeAealleealairrrllGpdHPd 42 
                 t+ s  NL+ +l+++g++deA  ll+eal++ r++lG+ HPd
  KOO23821.1 193 TLESIGNLGSLLHDQGKLDEAGVLLREALEASRATLGDRHPD 234
                 789999***********************************9 PP

  == domain 4  score: 46.3 bits;  conditional E-value: 2.6e-15
      TPR_10   1 tAsslnNLanalrqrgrydeAealleealairrrllGpdHPd 42 
                 t++s nNL+ +l+++g++deA  l++eal++ r++lG+ HPd
  KOO23821.1 235 TLRSINNLGSLLHDQGKLDEASVLYREALEASRATLGDRHPD 276
                 899**************************************9 PP

  == domain 5  score: 37.4 bits;  conditional E-value: 1.7e-12
      TPR_10   1 tAsslnNLanalrqrgrydeAealleealairrrllGpdHPd 42 
                 t++s nNL+ +l ++g++deA  l++e l++ r +lG+ HPd
  KOO23821.1 277 TLTSINNLGLLLLAQGQLDEASVLYREDLEASRVTLGDRHPD 318
                 89***************************************9 PP

  == domain 6  score: 38.1 bits;  conditional E-value: 1e-12
      TPR_10   1 tAsslnNLanalrqrgrydeAealleealairrrllGpdHP 41 
                 t++s  NL+++l+++g++deA  ll+eal++ r++lG+ HP
  KOO23821.1 319 TLTSIGNLGVLLHNQGKLDEAGVLLREALEAKRATLGDRHP 359
                 899*************************************9 PP

  == domain 7  score: 34.5 bits;  conditional E-value: 1.4e-11
      TPR_10   1 tAsslnNLanalrqrgrydeAealleealairrrllGpdHPd 42 
                 t+ s +NL+ +l+++g++deA  l++e l++ r++lG+ HPd
  KOO23821.1 361 TLVSISNLGGLLQAQGQLDEAGVLYREDLEASRATLGDRHPD 402
                 7899*************************************9 PP

  == domain 8  score: 16.9 bits;  conditional E-value: 4.8e-06
      TPR_10   2 AsslnNLanalrqrgrydeAealleealairrrl 35 
                 + s   L+++l+++gr+ eAe ll ea + + ++
  KOO23821.1 404 LISIAYLGRLLHDQGRLGEAETLLLEAHNGCAAT 437
                 567788*********************8877665 PP

  == domain 9  score: 13.7 bits;  conditional E-value: 4.9e-05
      TPR_10   2 AsslnNLanalrqrgrydeAeal.leealairrrllGp 38 
                 ++s+  La + r++gr + A+al   ++l++ r++lGp
  KOO23821.1 446 LRSQAWLADVRRAQGRIESARALvDARVLSTARAALGP 483
                 78999********************************8 PP

  == domain 10  score: 3.2 bits;  conditional E-value: 0.098
      TPR_10  24 lleealairrrllGpdHPd 42 
                 +l+ al++   +lGp+HP+
  KOO23821.1 508 PLQAALERMWTVLGPEHPE 526
                 57888999999*******7 PP

  == domain 11  score: -1.1 bits;  conditional E-value: 2.2
      TPR_10  21 AealleealairrrllGp 38 
                 A+   eea ++ r l+G+
  KOO23821.1 533 ALSQEEEAASRARSLHGH 550
                 778889******999996 PP

>> TPR_12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.4   2.4   2.3e-16   2.1e-13       4      72 ..     111     179 ..     106     179 .. 0.93
   2 !   53.3   2.5   2.8e-17   2.5e-14       8      75 ..     157     224 ..     156     225 .. 0.97
   3 !   60.1   1.9   2.1e-19   1.8e-16       7      76 ..     198     267 ..     195     268 .. 0.96
   4 !   57.3   1.8   1.6e-18   1.4e-15       2      70 ..     235     303 ..     234     309 .. 0.94
   5 !   44.0   2.0   2.3e-14   2.1e-11       7      76 ..     282     351 ..     282     352 .. 0.98
   6 !   46.2   0.5   4.6e-15   4.1e-12       2      64 ..     319     381 ..     318     381 .. 0.97
   7 !   46.7   1.8   3.2e-15   2.9e-12       4      74 ..     363     433 ..     360     436 .. 0.94
   8 !    6.7   0.1      0.01       8.9       5      44 ..     450     488 ..     444     505 .. 0.73
   9 ?    5.3   0.0     0.026        23      26      58 ..     509     541 ..     505     546 .. 0.84

  Alignments for each domain:
  == domain 1  score: 50.4 bits;  conditional E-value: 2.3e-16
      TPR_12   4 talnnlaavlrrlgrydeAlellekaleiarrllGpdhpltattlrnLgrlyralgryeeAlelleeal 72 
                 +++ +l+ +l+++g++deA  ll++ale++r++lG+ hp t+ ++ nLg+l++ +g+++eA  l++eal
  KOO23821.1 111 ALQDRLGRLLQAQGKLDEAGVLLREALEAMRATLGDRHPHTLVSMDNLGELLHDQGQLDEAGVLYREAL 179
                 44548********************************************************99999997 PP

  == domain 2  score: 53.3 bits;  conditional E-value: 2.8e-17
      TPR_12   8 nlaavlrrlgrydeAlellekaleiarrllGpdhpltattlrnLgrlyralgryeeAlelleealaia 75 
                 nl+++l+ +g++deA  l+++ale+ r++lG+ hp+t+++  nLg l++ +g+++eA  ll+eal++ 
  KOO23821.1 157 NLGELLHDQGQLDEAGVLYREALEASRATLGDRHPDTLESIGNLGSLLHDQGKLDEAGVLLREALEAS 224
                 8****************************************************************975 PP

  == domain 3  score: 60.1 bits;  conditional E-value: 2.1e-19
      TPR_12   7 nnlaavlrrlgrydeAlellekaleiarrllGpdhpltattlrnLgrlyralgryeeAlelleealaiae 76 
                  nl+++l+ +g++deA  ll++ale+ r++lG+ hp+t+++ +nLg l++ +g+++eA  l++eal++ +
  KOO23821.1 198 GNLGSLLHDQGKLDEAGVLLREALEASRATLGDRHPDTLRSINNLGSLLHDQGKLDEASVLYREALEASR 267
                 69*****************************************************************876 PP

  == domain 4  score: 57.3 bits;  conditional E-value: 1.6e-18
      TPR_12   2 vatalnnlaavlrrlgrydeAlellekaleiarrllGpdhpltattlrnLgrlyralgryeeAlellee 70 
                 ++++ nnl+++l+ +g++deA  l+++ale+ r++lG+ hp+t+t+ +nLg l++a+g+++eA  l++e
  KOO23821.1 235 TLRSINNLGSLLHDQGKLDEASVLYREALEASRATLGDRHPDTLTSINNLGLLLLAQGQLDEASVLYRE 303
                 677889**********************************************************99998 PP

  == domain 5  score: 44.0 bits;  conditional E-value: 2.3e-14
      TPR_12   7 nnlaavlrrlgrydeAlellekaleiarrllGpdhpltattlrnLgrlyralgryeeAlelleealaiae 76 
                 nnl+++l+++g++deA  l+++ le+ r +lG+ hp+t+t+  nLg l++ +g+++eA  ll+eal++++
  KOO23821.1 282 NNLGLLLLAQGQLDEASVLYREDLEASRVTLGDRHPDTLTSIGNLGVLLHNQGKLDEAGVLLREALEAKR 351
                 69*****************************************************************987 PP

  == domain 6  score: 46.2 bits;  conditional E-value: 4.6e-15
      TPR_12   2 vatalnnlaavlrrlgrydeAlellekaleiarrllGpdhpltattlrnLgrlyralgryeeA 64 
                 ++t+  nl+++l+ +g++deA  ll++ale+ r++lG+ hp t+ +  nLg l++a+g+++eA
  KOO23821.1 319 TLTSIGNLGVLLHNQGKLDEAGVLLREALEAKRATLGDRHPSTLVSISNLGGLLQAQGQLDEA 381
                 778899********************************************************9 PP

  == domain 7  score: 46.7 bits;  conditional E-value: 3.2e-15
      TPR_12   4 talnnlaavlrrlgrydeAlellekaleiarrllGpdhpltattlrnLgrlyralgryeeAlelleealai 74 
                  + +nl+ +l+++g++deA  l+++ le+ r++lG+ hp+t+++   Lgrl++ +gr+ eA+ ll ea + 
  KOO23821.1 363 VSISNLGGLLQAQGQLDEAGVLYREDLEASRATLGDRHPDTLISIAYLGRLLHDQGRLGEAETLLLEAHNG 433
                 5567**************************************************************99875 PP

  == domain 8  score: 6.7 bits;  conditional E-value: 0.01
      TPR_12   5 alnnlaavlrrlgrydeAlelle.kaleiarrllGpdhplt 44 
                 a+  la+v r++gr + A++l + ++l  ar++lGp+ + t
  KOO23821.1 450 AW--LADVRRAQGRIESARALVDaRVLSTARAALGPTVDTT 488
                 44..9***************986256666677788765555 PP

  == domain 9  score: 5.3 bits;  conditional E-value: 0.026
      TPR_12  26 lekaleiarrllGpdhpltattlrnLgrlyral 58 
                 l++ale++  +lGp+hp+t ++  +L++  +a+
  KOO23821.1 509 LQAALERMWTVLGPEHPETRRCAVALSQEEEAA 541
                 678999997899***********9999876665 PP

>> TPR_MalT  MalT-like TPR region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.3   4.0   1.4e-13   1.2e-10      23     155 ..      94     227 ..      74     236 .. 0.85
   2 !   31.8   0.1   1.1e-10   9.5e-08      45     154 ..     241     352 ..     230     358 .. 0.88
   3 !   59.0   6.4   5.7e-19   5.2e-16      41     226 ..     321     514 ..     312     550 .. 0.79

  Alignments for each domain:
  == domain 1  score: 41.3 bits;  conditional E-value: 1.4e-13
    TPR_MalT  23 lArqALallpeddllariaatavlGeasllqGdleaAlqalqeaekl...arqadslhvallallqqaeilvaqGrLheAletyeqalqlateqglqql 118
                   r+ALa++p ++  ++++    lG+  + qG+l++A   l+ea ++   +++  ++h +l+++  ++e+l  qG+L+eA  +y++al+  + + + + 
  KOO23821.1  94 EGRAALARMPREERATSALQ-DRLGRLLQAQGKLDEAGVLLREALEAmraTLGDRHPH-TLVSMDNLGELLHDQGQLDEAGVLYREALEASRATLGDRH 190
                 5689*******998777777.667******************7775423256777777.**************************************** PP

    TPR_MalT 119 plvgfllvlladllyEwndLeeAeqhlqeGielleql 155
                 p        l+ ll+++++L+eA   l+e++e ++  
  KOO23821.1 191 PDTLESIGNLGSLLHDQGKLDEAGVLLREALEASRAT 227
                 9555555999*********************998875 PP

  == domain 2  score: 31.8 bits;  conditional E-value: 1.1e-10
    TPR_MalT  45 vlGeasllqGdleaAlqalqeaekl..arqadslhvallallqqaeilvaqGrLheAletyeqalqlateqglqqlplvgfllvlladllyEwndLeeA 141
                 +lG   + qG+l++A   ++ea ++  a   d+ + +l+++  ++ +l aqG+L+eA  +y++ l+  + + + + p        l+ ll+ +++L+eA
  KOO23821.1 241 NLGSLLHDQGKLDEASVLYREALEAsrATLGDRHPDTLTSINNLGLLLLAQGQLDEASVLYREDLEASRVTLGDRHPDTLTSIGNLGVLLHNQGKLDEA 339
                 68888999************8887622334455566*****************************************999999**************** PP

    TPR_MalT 142 eqhlqeGielleq 154
                    l+e++e  + 
  KOO23821.1 340 GVLLREALEAKRA 352
                 *******998765 PP

  == domain 3  score: 59.0 bits;  conditional E-value: 5.7e-19
    TPR_MalT  41 aatavlGeasllqGdleaAlqalqeaekl..arqadslhvallallqqaeilvaqGrLheAletyeqalqlateqglqqlplvgfllvlladllyEwnd 137
                 +   +lG   + qG+l++A   l+ea ++  a   d+ + +l+++  ++ +l+aqG+L+eA  +y++ l+  + + + + p   +  ++l++ll+++++
  KOO23821.1 321 TSIGNLGVLLHNQGKLDEAGVLLREALEAkrATLGDRHPSTLVSISNLGGLLQAQGQLDEAGVLYREDLEASRATLGDRHPDTLISIAYLGRLLHDQGR 419
                 55678999****************8876533555566666*********************************************************** PP

    TPR_MalT 138 LeeAeqhlqeGie...lleqlepeaaldayvllarialaqGdleeAetllekaeelaresnf..hvdwlanaeevrvrlwlaqg.dlaaaerwle 226
                 L eAe+ l+e+      +   +++++l++++ la+++ aqG++e A +l++     ++++    +vd + ++e+v+ rl  a g  l+ ++++le
  KOO23821.1 420 LGEAETLLLEAHNgcaATLAEGQRTRLRSQAWLADVRRAQGRIESARALVDARVLSTARAALgpTVDTTLMLEAVHARLECAAGgGLSPLQAALE 514
                 *******9876653104444588999**********************99977666666665334677789999999998888754444444443 PP

>> TPR_8  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.5   0.1    0.0062       5.5       6      29 ..     115     138 ..     112     141 .. 0.94
   2 !   14.2   0.0   4.3e-05     0.039       6      33 ..     157     184 ..     154     185 .. 0.92
   3 !   14.7   0.0   2.8e-05     0.026       2      33 ..     195     226 ..     194     227 .. 0.91
   4 !   19.1   0.0   1.1e-06     0.001       2      33 ..     237     268 ..     236     269 .. 0.92
   5 !    7.7   0.0    0.0053       4.7       3      26 ..     280     303 ..     278     309 .. 0.86
   6 !   12.3   0.0   0.00017      0.15       5      33 ..     324     352 ..     320     353 .. 0.91
   7 ?    2.3   0.0      0.27   2.4e+02       6      26 ..     367     387 ..     364     395 .. 0.83
   8 ?    3.9   0.0     0.083        74       7      27 ..     410     430 ..     409     430 .. 0.91
   9 ?    0.4   0.0       1.1     1e+03       2      22 ..     447     467 ..     446     468 .. 0.87

  Alignments for each domain:
  == domain 1  score: 7.5 bits;  conditional E-value: 0.0062
                 HHHHHHHHTT-HHHHHHHHHHHHH CS
       TPR_8   6 nlgsiylklgdyeeAkeyyekale 29 
                 +lg++++ +g+++eA   +++ale
  KOO23821.1 115 RLGRLLQAQGKLDEAGVLLREALE 138
                 79********************98 PP

  == domain 2  score: 14.2 bits;  conditional E-value: 4.3e-05
                 HHHHHHHHTT-HHHHHHHHHHHHHHHHH CS
       TPR_8   6 nlgsiylklgdyeeAkeyyekaleldpd 33 
                 nlg +++++g+++eA   y++ale++++
  KOO23821.1 157 NLGELLHDQGQLDEAGVLYREALEASRA 184
                 9***********************9875 PP

  == domain 3  score: 14.7 bits;  conditional E-value: 2.8e-05
                 CHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH CS
       TPR_8   2 eayynlgsiylklgdyeeAkeyyekaleldpd 33 
                 e+  nlgs+++++g+++eA   +++ale++++
  KOO23821.1 195 ESIGNLGSLLHDQGKLDEAGVLLREALEASRA 226
                 56789***********************9875 PP

  == domain 4  score: 19.1 bits;  conditional E-value: 1.1e-06
                 CHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH CS
       TPR_8   2 eayynlgsiylklgdyeeAkeyyekaleldpd 33 
                 ++ +nlgs+++++g+++eA   y++ale++++
  KOO23821.1 237 RSINNLGSLLHDQGKLDEASVLYREALEASRA 268
                 6789************************9875 PP

  == domain 5  score: 7.7 bits;  conditional E-value: 0.0053
                 HHHHHHHHHHHTT-HHHHHHHHHH CS
       TPR_8   3 ayynlgsiylklgdyeeAkeyyek 26 
                 + +nlg+++l +g+++eA   y++
  KOO23821.1 280 SINNLGLLLLAQGQLDEASVLYRE 303
                 568***************988876 PP

  == domain 6  score: 12.3 bits;  conditional E-value: 0.00017
                 HHHHHHHHHTT-HHHHHHHHHHHHHHHHH CS
       TPR_8   5 ynlgsiylklgdyeeAkeyyekaleldpd 33 
                  nlg +++++g+++eA   +++ale++++
  KOO23821.1 324 GNLGVLLHNQGKLDEAGVLLREALEAKRA 352
                 69***********************9875 PP

  == domain 7  score: 2.3 bits;  conditional E-value: 0.27
                 HHHHHHHHTT-HHHHHHHHHH CS
       TPR_8   6 nlgsiylklgdyeeAkeyyek 26 
                 nlg +++ +g+++eA   y++
  KOO23821.1 367 NLGGLLQAQGQLDEAGVLYRE 387
                 8999***********888876 PP

  == domain 8  score: 3.9 bits;  conditional E-value: 0.083
                 HHHHHHHTT-HHHHHHHHHHH CS
       TPR_8   7 lgsiylklgdyeeAkeyyeka 27 
                 lg++++++g++ eA+  + +a
  KOO23821.1 410 LGRLLHDQGRLGEAETLLLEA 430
                 89************9988876 PP

  == domain 9  score: 0.4 bits;  conditional E-value: 1.1
                 CHHHHHHHHHHHTT-HHHHHH CS
       TPR_8   2 eayynlgsiylklgdyeeAke 22 
                 ++  +l+++ + +g++e+A +
  KOO23821.1 447 RSQAWLADVRRAQGRIESARA 467
                 677899************976 PP

>> TPR_1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.2   0.2    0.0026       2.3       6      29 ..     115     138 ..     115     139 .. 0.95
   2 !   14.3   0.1     3e-05     0.027       6      29 ..     157     180 ..     157     182 .. 0.97
   3 !   11.5   0.0   0.00023      0.21       5      29 ..     198     222 ..     195     224 .. 0.93
   4 !   19.1   0.0   9.2e-07   0.00083       5      29 ..     240     264 ..     237     266 .. 0.95
   5 !   12.6   0.0    0.0001     0.093       5      25 ..     282     302 ..     280     303 .. 0.92
   6 !   13.5   0.0   5.2e-05     0.047       6      29 ..     325     348 ..     322     351 .. 0.94
   7 ?    5.7   0.0     0.016        14       5      25 ..     366     386 ..     364     387 .. 0.87
   8 ?    1.3   0.1      0.38   3.4e+02       6      24 ..     409     427 ..     408     431 .. 0.83

  Alignments for each domain:
  == domain 1  score: 8.2 bits;  conditional E-value: 0.0026
                 HHHHHHHHTT-HHHHHHHHHHHHH CS
       TPR_1   6 nlGnayfklgkydeAleyyekALe 29 
                 +lG +++ +gk+deA    ++ALe
  KOO23821.1 115 RLGRLLQAQGKLDEAGVLLREALE 138
                 79********************98 PP

  == domain 2  score: 14.3 bits;  conditional E-value: 3e-05
                 HHHHHHHHTT-HHHHHHHHHHHHH CS
       TPR_1   6 nlGnayfklgkydeAleyyekALe 29 
                 nlG +++ +g++deA   y++ALe
  KOO23821.1 157 NLGELLHDQGQLDEAGVLYREALE 180
                 9**********************8 PP

  == domain 3  score: 11.5 bits;  conditional E-value: 0.00023
                 HHHHHHHHHTT-HHHHHHHHHHHHH CS
       TPR_1   5 ynlGnayfklgkydeAleyyekALe 29 
                  nlG +++ +gk+deA    ++ALe
  KOO23821.1 198 GNLGSLLHDQGKLDEAGVLLREALE 222
                 59*********************98 PP

  == domain 4  score: 19.1 bits;  conditional E-value: 9.2e-07
                 HHHHHHHHHTT-HHHHHHHHHHHHH CS
       TPR_1   5 ynlGnayfklgkydeAleyyekALe 29 
                 +nlG +++ +gk+deA   y++ALe
  KOO23821.1 240 NNLGSLLHDQGKLDEASVLYREALE 264
                 8***********************8 PP

  == domain 5  score: 12.6 bits;  conditional E-value: 0.0001
                 HHHHHHHHHTT-HHHHHHHHH CS
       TPR_1   5 ynlGnayfklgkydeAleyye 25 
                 +nlG++++ +g++deA   y+
  KOO23821.1 282 NNLGLLLLAQGQLDEASVLYR 302
                 8***************99997 PP

  == domain 6  score: 13.5 bits;  conditional E-value: 5.2e-05
                 HHHHHHHHTT-HHHHHHHHHHHHH CS
       TPR_1   6 nlGnayfklgkydeAleyyekALe 29 
                 nlG++++++gk+deA    ++ALe
  KOO23821.1 325 NLGVLLHNQGKLDEAGVLLREALE 348
                 9*********************98 PP

  == domain 7  score: 5.7 bits;  conditional E-value: 0.016
                 HHHHHHHHHTT-HHHHHHHHH CS
       TPR_1   5 ynlGnayfklgkydeAleyye 25 
                  nlG +++ +g++deA   y+
  KOO23821.1 366 SNLGGLLQAQGQLDEAGVLYR 386
                 59**************77665 PP

  == domain 8  score: 1.3 bits;  conditional E-value: 0.38
                 HHHHHHHHTT-HHHHHHHH CS
       TPR_1   6 nlGnayfklgkydeAleyy 24 
                  lG +++ +g++ eA+   
  KOO23821.1 409 YLGRLLHDQGRLGEAETLL 427
                 5999***********8765 PP

>> TPR_2  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.1   0.3   0.00038      0.34       5      29 ..     114     138 ..     110     141 .. 0.91
   2 !   13.4   0.1   6.9e-05     0.062       6      30 ..     157     181 ..     154     184 .. 0.92
   3 !    9.0   0.0    0.0018       1.6       6      30 ..     199     223 ..     195     226 .. 0.92
   4 !   14.5   0.1   3.1e-05     0.028       5      30 ..     240     265 ..     237     268 .. 0.92
   5 !   11.3   0.1   0.00033       0.3       5      29 ..     282     306 ..     280     308 .. 0.90
   6 !   10.5   0.1   0.00062      0.55       6      29 ..     325     348 ..     323     351 .. 0.94
   7 ?    5.4   0.0     0.025        23       6      29 ..     367     390 ..     364     393 .. 0.87
   8 !    7.6   0.1    0.0051       4.6       6      27 ..     409     430 ..     406     432 .. 0.92
   9 ?    1.6   0.0      0.42   3.8e+02       6      23 ..     451     468 ..     447     471 .. 0.87

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00038
       TPR_2   5 ynlGlayyklgdyeeAleafekAle 29 
                  +lG+++ ++g+++eA  ++++Ale
  KOO23821.1 114 DRLGRLLQAQGKLDEAGVLLREALE 138
                 68**********************8 PP

  == domain 2  score: 13.4 bits;  conditional E-value: 6.9e-05
       TPR_2   6 nlGlayyklgdyeeAleafekAlel 30 
                 nlG+++  +g+++eA  ++++Ale 
  KOO23821.1 157 NLGELLHDQGQLDEAGVLYREALEA 181
                 9**********************95 PP

  == domain 3  score: 9.0 bits;  conditional E-value: 0.0018
       TPR_2   6 nlGlayyklgdyeeAleafekAlel 30 
                 nlG ++  +g+++eA  ++++Ale 
  KOO23821.1 199 NLGSLLHDQGKLDEAGVLLREALEA 223
                 89*********************95 PP

  == domain 4  score: 14.5 bits;  conditional E-value: 3.1e-05
       TPR_2   5 ynlGlayyklgdyeeAleafekAlel 30 
                 +nlG ++  +g+++eA  ++++Ale 
  KOO23821.1 240 NNLGSLLHDQGKLDEASVLYREALEA 265
                 79**********************95 PP

  == domain 5  score: 11.3 bits;  conditional E-value: 0.00033
       TPR_2   5 ynlGlayyklgdyeeAleafekAle 29 
                 +nlGl+++++g+++eA  ++++ le
  KOO23821.1 282 NNLGLLLLAQGQLDEASVLYREDLE 306
                 79***************99998665 PP

  == domain 6  score: 10.5 bits;  conditional E-value: 0.00062
       TPR_2   6 nlGlayyklgdyeeAleafekAle 29 
                 nlG ++ ++g+++eA  ++++Ale
  KOO23821.1 325 NLGVLLHNQGKLDEAGVLLREALE 348
                 89*********************8 PP

  == domain 7  score: 5.4 bits;  conditional E-value: 0.025
       TPR_2   6 nlGlayyklgdyeeAleafekAle 29 
                 nlG ++ ++g+++eA  ++++ le
  KOO23821.1 367 NLGGLLQAQGQLDEAGVLYREDLE 390
                 8999***********999988665 PP

  == domain 8  score: 7.6 bits;  conditional E-value: 0.0051
       TPR_2   6 nlGlayyklgdyeeAleafekA 27 
                 +lG+++  +g++ eA+ ++ +A
  KOO23821.1 409 YLGRLLHDQGRLGEAETLLLEA 430
                 89****************9999 PP

  == domain 9  score: 1.6 bits;  conditional E-value: 0.42
       TPR_2   6 nlGlayyklgdyeeAlea 23 
                 +l+++ +++g+ e A+++
  KOO23821.1 451 WLADVRRAQGRIESARAL 468
                 7999***********975 PP

>> TPR_4  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.1   1.4       2.3   2.1e+03       4      21 ..      84     101 ..      81     101 .. 0.78
   2 !    9.7   2.4    0.0016       1.4       7      26 .]     116     135 ..     111     135 .. 0.94
   3 !   13.2   0.0   0.00012      0.11       6      26 .]     157     177 ..     153     177 .. 0.90
   4 !    9.9   0.0    0.0014       1.3       6      26 .]     199     219 ..     198     219 .. 0.93
   5 ?    6.9   0.0     0.013        11       6      25 ..     241     260 ..     240     261 .. 0.88
   6 !   11.4   0.1   0.00045       0.4       6      25 ..     283     302 ..     282     303 .. 0.89
   7 !   10.6   0.0   0.00081      0.72       6      26 .]     325     345 ..     324     345 .. 0.94
   8 !    8.8   0.2    0.0031       2.8       6      26 .]     367     387 ..     366     387 .. 0.88
   9 !   13.9   1.4   7.2e-05     0.065       7      24 ..     410     427 ..     408     429 .. 0.92
  10 !   10.7   3.1   0.00075      0.68       2      25 ..     447     470 ..     446     471 .. 0.92

  Alignments for each domain:
  == domain 1  score: -0.1 bits;  conditional E-value: 2.3
       TPR_4   4 llaLArallalGdldeAr 21 
                 ++ L++ l+a G+++ Ar
  KOO23821.1  84 CASLCEWLAAEGRAALAR 101
                 566778899999999887 PP

  == domain 2  score: 9.7 bits;  conditional E-value: 0.0016
       TPR_4   7 LArallalGdldeAraller 26 
                 L+r+l+a+G ldeA  ll++
  KOO23821.1 116 LGRLLQAQGKLDEAGVLLRE 135
                 9*****************97 PP

  == domain 3  score: 13.2 bits;  conditional E-value: 0.00012
       TPR_4   6 aLArallalGdldeAraller 26 
                 +L+++l+++G+ldeA  l ++
  KOO23821.1 157 NLGELLHDQGQLDEAGVLYRE 177
                 8**************988875 PP

  == domain 4  score: 9.9 bits;  conditional E-value: 0.0014
       TPR_4   6 aLArallalGdldeAraller 26 
                 +L+ +l+++G ldeA  ll++
  KOO23821.1 199 NLGSLLHDQGKLDEAGVLLRE 219
                 7999***************97 PP

  == domain 5  score: 6.9 bits;  conditional E-value: 0.013
       TPR_4   6 aLArallalGdldeAralle 25 
                 +L+ +l+++G ldeA  l +
  KOO23821.1 241 NLGSLLHDQGKLDEASVLYR 260
                 7899***********88877 PP

  == domain 6  score: 11.4 bits;  conditional E-value: 0.00045
       TPR_4   6 aLArallalGdldeAralle 25 
                 +L+ +lla+G+ldeA  l +
  KOO23821.1 283 NLGLLLLAQGQLDEASVLYR 302
                 79*************88877 PP

  == domain 7  score: 10.6 bits;  conditional E-value: 0.00081
       TPR_4   6 aLArallalGdldeAraller 26 
                 +L+ +l+ +G ldeA  ll++
  KOO23821.1 325 NLGVLLHNQGKLDEAGVLLRE 345
                 89*****************97 PP

  == domain 8  score: 8.8 bits;  conditional E-value: 0.0031
       TPR_4   6 aLArallalGdldeAraller 26 
                 +L+ +l+a+G+ldeA  l ++
  KOO23821.1 367 NLGGLLQAQGQLDEAGVLYRE 387
                 89999**********988875 PP

  == domain 9  score: 13.9 bits;  conditional E-value: 7.2e-05
       TPR_4   7 LArallalGdldeArall 24 
                 L+r+l+++G+l eA++ll
  KOO23821.1 410 LGRLLHDQGRLGEAETLL 427
                 9***************98 PP

  == domain 10  score: 10.7 bits;  conditional E-value: 0.00075
       TPR_4   2 rallaLArallalGdldeAralle 25 
                 r +++LA +  a+G+ + Aral++
  KOO23821.1 447 RSQAWLADVRRAQGRIESARALVD 470
                 7899*****************987 PP

>> TPR_7  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.1   0.7    0.0033         3       3      33 ..     114     145 ..     111     147 .. 0.85
   2 !   11.3   0.2   0.00032      0.29       2      30 ..     155     183 ..     154     189 .. 0.82
   3 !    9.5   0.1    0.0012         1       1      29 [.     196     224 ..     196     231 .. 0.81
   4 !   14.1   0.1   3.9e-05     0.035       1      30 [.     238     267 ..     238     273 .. 0.83
   5 !    8.5   0.2    0.0025       2.2       1      32 [.     280     312 ..     280     315 .. 0.85
   6 !    9.1   0.1    0.0016       1.4       1      30 [.     322     351 ..     322     357 .. 0.83
   7 !    7.9   0.2    0.0037       3.3       1      29 [.     364     392 ..     364     399 .. 0.82
   8 ?    5.8   0.2     0.018        16       2      24 ..     407     429 ..     406     440 .. 0.90
   9 ?   -2.1   0.1         6   5.3e+03       5      18 ..     452     465 ..     452     471 .. 0.84

  Alignments for each domain:
  == domain 1  score: 8.1 bits;  conditional E-value: 0.0033
       TPR_7   3 lnLarlysrlGdyeeAielyeqsL.altkdpe 33 
                 ++L+rl +++G+ +eA  l++++L a++   +
  KOO23821.1 114 DRLGRLLQAQGKLDEAGVLLREALeAMRATLG 145
                 68********************9977776655 PP

  == domain 2  score: 11.3 bits;  conditional E-value: 0.00032
       TPR_7   2 LlnLarlysrlGdyeeAielyeqsLaltk 30 
                  +nL++l +++G+ +eA  ly+++L+  +
  KOO23821.1 155 MDNLGELLHDQGQLDEAGVLYREALEASR 183
                 58*********************884433 PP

  == domain 3  score: 9.5 bits;  conditional E-value: 0.0012
       TPR_7   1 aLlnLarlysrlGdyeeAielyeqsLalt 29 
                 ++ nL++l +++G+ +eA  l++++L+  
  KOO23821.1 196 SIGNLGSLLHDQGKLDEAGVLLREALEAS 224
                 578***************99999988433 PP

  == domain 4  score: 14.1 bits;  conditional E-value: 3.9e-05
       TPR_7   1 aLlnLarlysrlGdyeeAielyeqsLaltk 30 
                 +++nL++l +++G+ +eA  ly+++L+  +
  KOO23821.1 238 SINNLGSLLHDQGKLDEASVLYREALEASR 267
                 689*********************884433 PP

  == domain 5  score: 8.5 bits;  conditional E-value: 0.0025
       TPR_7   1 aLlnLarlysrlGdyeeAielyeqsL.altkdp 32 
                 +++nL+ l  ++G+ +eA  ly++ L a +   
  KOO23821.1 280 SINNLGLLLLAQGQLDEASVLYREDLeASRVTL 312
                 689*********************886666655 PP

  == domain 6  score: 9.1 bits;  conditional E-value: 0.0016
       TPR_7   1 aLlnLarlysrlGdyeeAielyeqsLaltk 30 
                 ++ nL++l +++G+ +eA  l++++L+  +
  KOO23821.1 322 SIGNLGVLLHNQGKLDEAGVLLREALEAKR 351
                 578***************999999886554 PP

  == domain 7  score: 7.9 bits;  conditional E-value: 0.0037
       TPR_7   1 aLlnLarlysrlGdyeeAielyeqsLalt 29 
                 +++nL+ l +++G+ +eA  ly++ L+  
  KOO23821.1 364 SISNLGGLLQAQGQLDEAGVLYREDLEAS 392
                 579*********************88433 PP

  == domain 8  score: 5.8 bits;  conditional E-value: 0.018
       TPR_7   2 LlnLarlysrlGdyeeAielyeq 24 
                 + +L+rl +++G+  eA++l+ +
  KOO23821.1 407 IAYLGRLLHDQGRLGEAETLLLE 429
                 679****************9876 PP

  == domain 9  score: -2.1 bits;  conditional E-value: 6
       TPR_7   5 LarlysrlGdyeeA 18 
                 La++++++G+ e A
  KOO23821.1 452 LADVRRAQGRIESA 465
                 8999999**98887 PP

>> TPR_17  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.9   0.2      0.87   7.8e+02      19      32 ..     116     129 ..     115     130 .. 0.93
   2 ?    6.8   0.0     0.011        10      15      32 ..     154     171 ..     152     172 .. 0.91
   3 ?    4.2   0.0     0.073        65      14      32 ..     195     213 ..     188     214 .. 0.84
   4 ?    6.6   0.0     0.013        11      15      32 ..     238     255 ..     230     256 .. 0.87
   5 !    9.0   0.0    0.0022         2      14      32 ..     279     297 ..     272     298 .. 0.86
   6 ?    6.0   0.0      0.02        18      17      32 ..     324     339 ..     314     340 .. 0.87
   7 ?    1.2   0.0      0.69   6.2e+02      17      32 ..     366     381 ..     357     382 .. 0.88
   8 ?    4.6   0.0     0.058        52      15      33 ..     406     424 ..     398     425 .. 0.85

  Alignments for each domain:
  == domain 1  score: 0.9 bits;  conditional E-value: 0.87
      TPR_17  19 LAelllknGdlmtA 32 
                 L++ll  +G+l++A
  KOO23821.1 116 LGRLLQAQGKLDEA 129
                 9***********98 PP

  == domain 2  score: 6.8 bits;  conditional E-value: 0.011
      TPR_17  15 aynnLAelllknGdlmtA 32 
                 ++ nL+ell+ +G+l++A
  KOO23821.1 154 SMDNLGELLHDQGQLDEA 171
                 677*************98 PP

  == domain 3  score: 4.2 bits;  conditional E-value: 0.073
      TPR_17  14 daynnLAelllknGdlmtA 32 
                 ++  nL+ ll+ +G+l++A
  KOO23821.1 195 ESIGNLGSLLHDQGKLDEA 213
                 6667*************98 PP

  == domain 4  score: 6.6 bits;  conditional E-value: 0.013
      TPR_17  15 aynnLAelllknGdlmtA 32 
                 + nnL+ ll+ +G+l++A
  KOO23821.1 238 SINNLGSLLHDQGKLDEA 255
                 779*************98 PP

  == domain 5  score: 9.0 bits;  conditional E-value: 0.0022
      TPR_17  14 daynnLAelllknGdlmtA 32 
                  + nnL+ lll +G+l++A
  KOO23821.1 279 TSINNLGLLLLAQGQLDEA 297
                 578**************98 PP

  == domain 6  score: 6.0 bits;  conditional E-value: 0.02
      TPR_17  17 nnLAelllknGdlmtA 32 
                  nL++ll+++G+l++A
  KOO23821.1 324 GNLGVLLHNQGKLDEA 339
                 69************98 PP

  == domain 7  score: 1.2 bits;  conditional E-value: 0.69
      TPR_17  17 nnLAelllknGdlmtA 32 
                  nL+ ll  +G+l++A
  KOO23821.1 366 SNLGGLLQAQGQLDEA 381
                 59999*********98 PP

  == domain 8  score: 4.6 bits;  conditional E-value: 0.058
      TPR_17  15 aynnLAelllknGdlmtAr 33 
                 +  +L++ll+ +G+l++A+
  KOO23821.1 406 SIAYLGRLLHDQGRLGEAE 424
                 5679*************97 PP

>> TPR_11  TPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.9   0.1     0.047        42       1      22 [.     117     138 ..     117     139 .. 0.88
   2 !   11.8   0.1   0.00016      0.15       1      22 [.     159     180 ..     159     184 .. 0.93
   3 !    7.7   0.0    0.0032       2.8       1      22 [.     201     222 ..     201     226 .. 0.91
   4 !   14.6   0.0   2.2e-05     0.019       1      22 [.     243     264 ..     243     268 .. 0.93
   5 !    6.4   0.0    0.0081       7.3       1      19 [.     285     303 ..     285     306 .. 0.90
   6 ?    3.7   0.0     0.057        51       4      22 ..     330     348 ..     327     352 .. 0.87
   7 ?    0.7   0.1      0.49   4.4e+02       6      18 ..     374     386 ..     369     387 .. 0.81
   8 ?    2.0   0.0      0.18   1.6e+02       1      20 [.     411     430 ..     411     432 .. 0.83
   9 ?    0.1   0.0      0.75   6.7e+02       2      14 ..     454     466 ..     453     468 .. 0.86

  Alignments for each domain:
  == domain 1  score: 3.9 bits;  conditional E-value: 0.047
      TPR_11   1 GdayyeqGkyeeAieaYkkAlk 22 
                 G+++ +qGk++eA   +++Al+
  KOO23821.1 117 GRLLQAQGKLDEAGVLLREALE 138
                 677779*******999999997 PP

  == domain 2  score: 11.8 bits;  conditional E-value: 0.00016
      TPR_11   1 GdayyeqGkyeeAieaYkkAlk 22 
                 G ++++qG+++eA   Y++Al+
  KOO23821.1 159 GELLHDQGQLDEAGVLYREALE 180
                 7899****************98 PP

  == domain 3  score: 7.7 bits;  conditional E-value: 0.0032
      TPR_11   1 GdayyeqGkyeeAieaYkkAlk 22 
                 G ++++qGk++eA   +++Al+
  KOO23821.1 201 GSLLHDQGKLDEAGVLLREALE 222
                 7899*************99997 PP

  == domain 4  score: 14.6 bits;  conditional E-value: 2.2e-05
      TPR_11   1 GdayyeqGkyeeAieaYkkAlk 22 
                 G ++++qGk++eA   Y++Al+
  KOO23821.1 243 GSLLHDQGKLDEASVLYREALE 264
                 7899****************98 PP

  == domain 5  score: 6.4 bits;  conditional E-value: 0.0081
      TPR_11   1 GdayyeqGkyeeAieaYkk 19 
                 G ++ +qG+++eA   Y++
  KOO23821.1 285 GLLLLAQGQLDEASVLYRE 303
                 77899*********99986 PP

  == domain 6  score: 3.7 bits;  conditional E-value: 0.057
      TPR_11   4 yyeqGkyeeAieaYkkAlk 22 
                 ++ qGk++eA   +++Al+
  KOO23821.1 330 LHNQGKLDEAGVLLREALE 348
                 788***********99997 PP

  == domain 7  score: 0.7 bits;  conditional E-value: 0.49
      TPR_11   6 eqGkyeeAieaYk 18 
                 +qG+++eA   Y+
  KOO23821.1 374 AQGQLDEAGVLYR 386
                 79******77776 PP

  == domain 8  score: 2.0 bits;  conditional E-value: 0.18
      TPR_11   1 GdayyeqGkyeeAieaYkkA 20 
                 G+++++qG++ eA + + +A
  KOO23821.1 411 GRLLHDQGRLGEAETLLLEA 430
                 899*********97666665 PP

  == domain 9  score: 0.1 bits;  conditional E-value: 0.75
      TPR_11   2 dayyeqGkyeeAi 14 
                 d+ ++qG++e A 
  KOO23821.1 454 DVRRAQGRIESAR 466
                 8899******996 PP

>> TPR_16  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.6   2.5      0.25   2.2e+02      39      62 ..     115     138 ..      92     143 .. 0.73
   2 !    7.2   5.2    0.0091       8.2      14      64 ..     134     182 ..     115     185 .. 0.84
   3 !   13.8   0.5   7.9e-05     0.071      13      64 ..     175     224 ..     175     227 .. 0.95
   4 !   11.5   0.4   0.00041      0.37      15      64 ..     219     266 ..     218     269 .. 0.90
   5 !   11.1   0.2   0.00055       0.5      13      58 ..     259     302 ..     259     308 .. 0.91
   6 !    9.2   0.0    0.0021       1.9      30      63 ..     316     349 ..     310     352 .. 0.86
   7 !    7.7   2.3    0.0061       5.4      30      59 ..     400     430 ..     366     439 .. 0.79
   8 !    7.5   1.4    0.0071       6.4      34      59 ..     446     471 ..     435     478 .. 0.82

  Alignments for each domain:
  == domain 1  score: 2.6 bits;  conditional E-value: 0.25
      TPR_16  39 llgdaalrqgrlaeAaalyraalr 62 
                  lg+++ +qg l+eA  l+r+al+
  KOO23821.1 115 RLGRLLQAQGKLDEAGVLLREALE 138
                 688888888888888888888875 PP

  == domain 2  score: 7.2 bits;  conditional E-value: 0.0091
      TPR_16  14 ddAaaaleaalkrdpssPdaaeAllllgdaalrqgrlaeAaalyraalraa 64 
                 ++A++a +a+l ++  +P +  ++ +lg+++  qg l+eA  lyr+al+a+
  KOO23821.1 134 REALEAMRATLGDR--HPHTLVSMDNLGELLHDQGQLDEAGVLYREALEAS 182
                 67888888888887..7888888889*********************9875 PP

  == domain 3  score: 13.8 bits;  conditional E-value: 7.9e-05
      TPR_16  13 yddAaaaleaalkrdpssPdaaeAllllgdaalrqgrlaeAaalyraalraa 64 
                 y++A++a +a+l ++  +Pd+ e+  +lg ++  qg l+eA  l+r+al+a+
  KOO23821.1 175 YREALEASRATLGDR--HPDTLESIGNLGSLLHDQGKLDEAGVLLREALEAS 224
                 899*****9999999..9******************************9875 PP

  == domain 4  score: 11.5 bits;  conditional E-value: 0.00041
      TPR_16  15 dAaaaleaalkrdpssPdaaeAllllgdaalrqgrlaeAaalyraalraa 64 
                 +A++a +a+l ++  +Pd+ ++ ++lg ++  qg l+eA  lyr+al+a+
  KOO23821.1 219 EALEASRATLGDR--HPDTLRSINNLGSLLHDQGKLDEASVLYREALEAS 266
                 7888888888888..8******************************9875 PP

  == domain 5  score: 11.1 bits;  conditional E-value: 0.00055
      TPR_16  13 yddAaaaleaalkrdpssPdaaeAllllgdaalrqgrlaeAaalyr 58 
                 y++A++a +a+l ++  +Pd+  + ++lg+++l+qg l+eA  lyr
  KOO23821.1 259 YREALEASRATLGDR--HPDTLTSINNLGLLLLAQGQLDEASVLYR 302
                 899*****9999999..9**********************966666 PP

  == domain 6  score: 9.2 bits;  conditional E-value: 0.0021
      TPR_16  30 sPdaaeAllllgdaalrqgrlaeAaalyraalra 63 
                 +Pd+  +  +lg+++  qg l+eA  l+r+al+a
  KOO23821.1 316 HPDTLTSIGNLGVLLHNQGKLDEAGVLLREALEA 349
                 4777778889*********************976 PP

  == domain 7  score: 7.7 bits;  conditional E-value: 0.0061
      TPR_16  30 sPdaaeAllllgdaalrqgrlaeAa.alyra 59 
                 +Pd+  +  +lg+++  qgrl eA+  l++a
  KOO23821.1 400 HPDTLISIAYLGRLLHDQGRLGEAEtLLLEA 430
                 5778888889***************555555 PP

  == domain 8  score: 7.5 bits;  conditional E-value: 0.0071
      TPR_16  34 aeAllllgdaalrqgrlaeAaalyra 59 
                  +++ +l+d++ +qgr + A+al++a
  KOO23821.1 446 LRSQAWLADVRRAQGRIESARALVDA 471
                 477889***************99987 PP

>> TPR_19  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.7   2.3     0.024        21      13      54 ..      98     139 ..      92     146 .. 0.78
   2 !   17.1   0.5   6.6e-06    0.0059       2      56 ..     163     225 ..     162     231 .. 0.90
   3 !   16.8   0.5   8.1e-06    0.0072       2      47 ..     247     300 ..     246     311 .. 0.86
   4 ?    5.9   0.0      0.02        18      22      56 ..     317     351 ..     311     356 .. 0.82
   5 !    9.2   0.5     0.002       1.8       3      50 ..     374     429 ..     371     432 .. 0.78
   6 !    8.2   0.6    0.0039       3.5      27      54 ..     448     475 ..     435     481 .. 0.83
   7 ?   -1.5   0.0         4   3.6e+03      13      44 ..     512     540 ..     510     543 .. 0.67

  Alignments for each domain:
  == domain 1  score: 5.7 bits;  conditional E-value: 0.024
      TPR_19  13 lleqalqedpknaearllLAeallalgqldeAealLdalpee 54 
                 +l+++  e+   ++++ +L ++l a+g ldeA  lL +++e+
  KOO23821.1  98 ALARMPREERATSALQDRLGRLLQAQGKLDEAGVLLREALEA 139
                 55555556666677777899************9999999886 PP

  == domain 2  score: 17.1 bits;  conditional E-value: 6.6e-06
      TPR_19   2 laegdyaeAlalleqalqe........dpknaearllLAeallalgqldeAealLdalpeedp 56 
                  ++g+++eA  l+++al++         p+ +e   +L  +l  +g ldeA  lL +++e+ +
  KOO23821.1 163 HDQGQLDEAGVLYREALEAsratlgdrHPDTLESIGNLGSLLHDQGKLDEAGVLLREALEASR 225
                 69***************7777777777*****************************9999865 PP

  == domain 3  score: 16.8 bits;  conditional E-value: 8.1e-06
      TPR_19   2 laegdyaeAlalleqalqe........dpknaearllLAeallalgqldeAeal 47 
                  ++g+++eA  l+++al++         p+ +    +L  +lla+gqldeA  l
  KOO23821.1 247 HDQGKLDEASVLYREALEAsratlgdrHPDTLTSINNLGLLLLAQGQLDEASVL 300
                 68***************7766666666999999999***************987 PP

  == domain 4  score: 5.9 bits;  conditional E-value: 0.02
      TPR_19  22 pknaearllLAeallalgqldeAealLdalpeedp 56 
                 p+ +    +L  +l ++g ldeA  lL +++e+++
  KOO23821.1 317 PDTLTSIGNLGVLLHNQGKLDEAGVLLREALEAKR 351
                 66666677899999999******999999999876 PP

  == domain 5  score: 9.2 bits;  conditional E-value: 0.002
      TPR_19   3 aegdyaeAlalleq........alqedpknaearllLAeallalgqldeAealLda 50 
                 a+g+++eA  l+++        + +  p+ +   ++L ++l  +g+l eAe lL +
  KOO23821.1 374 AQGQLDEAGVLYREdleasratLGDRHPDTLISIAYLGRLLHDQGRLGEAETLLLE 429
                 89******8888885554443333558887777789****************9965 PP

  == domain 6  score: 8.2 bits;  conditional E-value: 0.0039
      TPR_19  27 arllLAeallalgqldeAealLdalpee 54 
                  +++LA++  a+g+++ A+al+da  ++
  KOO23821.1 448 SQAWLADVRRAQGRIESARALVDARVLS 475
                 56799*****************986665 PP

  == domain 7  score: -1.5 bits;  conditional E-value: 4
      TPR_19  13 lleqalqe.dpknaearllLAeallalgqldeA 44 
                 +le++++   p+++e r     + +al q +eA
  KOO23821.1 512 ALERMWTVlGPEHPETRR----CAVALSQEEEA 540
                 667776666777888777....66777666666 PP

>> Osmo_CC  Osmosensory transporter coiled coil
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.1       3.9   3.5e+03      20      33 ..      48      61 ..      32      68 .. 0.60
   2 ?    5.1   0.1     0.031        28      29      44 ..     135     150 ..     134     151 .. 0.92
   3 ?    4.5   0.0     0.047        42      29      44 ..     177     192 ..     176     193 .. 0.92
   4 ?    4.5   0.0     0.047        42      29      44 ..     219     234 ..     218     235 .. 0.92
   5 ?    4.5   0.0     0.047        42      29      44 ..     261     276 ..     260     277 .. 0.92
   6 ?    3.2   0.0      0.12   1.1e+02      29      44 ..     303     318 ..     302     319 .. 0.91
   7 !    7.6   0.0    0.0051       4.6      29      44 ..     345     360 ..     344     361 .. 0.92
   8 ?    4.3   0.0     0.055        49      29      44 ..     387     402 ..     386     403 .. 0.92
   9 ?   -0.8   0.0       2.1   1.9e+03       5      15 ..     422     432 ..     420     434 .. 0.90

  Alignments for each domain:
  == domain 1  score: -1.7 bits;  conditional E-value: 3.9
                HHHHHHHHHHHHHH CS
     Osmo_CC 20 kvedideeIaaLee 33
                 ++  d++I+  e 
  KOO23821.1 48 GIDAADAQITMVED 61
                35666778877665 PP

  == domain 2  score: 5.1 bits;  conditional E-value: 0.031
                 HHHHHHHHHHHHH--- CS
     Osmo_CC  29 aaLeekRqrLvdqHPk 44 
                 +aLe+ R +L d+HP+
  KOO23821.1 135 EALEAMRATLGDRHPH 150
                 5899***********9 PP

  == domain 3  score: 4.5 bits;  conditional E-value: 0.047
                 HHHHHHHHHHHHH--- CS
     Osmo_CC  29 aaLeekRqrLvdqHPk 44 
                 +aLe+ R +L d+HP+
  KOO23821.1 177 EALEASRATLGDRHPD 192
                 589************7 PP

  == domain 4  score: 4.5 bits;  conditional E-value: 0.047
                 HHHHHHHHHHHHH--- CS
     Osmo_CC  29 aaLeekRqrLvdqHPk 44 
                 +aLe+ R +L d+HP+
  KOO23821.1 219 EALEASRATLGDRHPD 234
                 589************7 PP

  == domain 5  score: 4.5 bits;  conditional E-value: 0.047
                 HHHHHHHHHHHHH--- CS
     Osmo_CC  29 aaLeekRqrLvdqHPk 44 
                 +aLe+ R +L d+HP+
  KOO23821.1 261 EALEASRATLGDRHPD 276
                 589************7 PP

  == domain 6  score: 3.2 bits;  conditional E-value: 0.12
                 HHHHHHHHHHHHH--- CS
     Osmo_CC  29 aaLeekRqrLvdqHPk 44 
                 ++Le+ R +L d+HP+
  KOO23821.1 303 EDLEASRVTLGDRHPD 318
                 58999**********7 PP

  == domain 7  score: 7.6 bits;  conditional E-value: 0.0051
                 HHHHHHHHHHHHH--- CS
     Osmo_CC  29 aaLeekRqrLvdqHPk 44 
                 +aLe+kR +L d+HP 
  KOO23821.1 345 EALEAKRATLGDRHPS 360
                 68*************5 PP

  == domain 8  score: 4.3 bits;  conditional E-value: 0.055
                 HHHHHHHHHHHHH--- CS
     Osmo_CC  29 aaLeekRqrLvdqHPk 44 
                 ++Le+ R +L d+HP+
  KOO23821.1 387 EDLEASRATLGDRHPD 402
                 5899***********7 PP

  == domain 9  score: -0.8 bits;  conditional E-value: 2.1
                 XXXXXXXXXXT CS
     Osmo_CC   5 EAkelLqehYd 15 
                 EA+ lL e+++
  KOO23821.1 422 EAETLLLEAHN 432
                 9*******996 PP

>> TPR_3  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.9   0.0      0.53   4.7e+02      10      20 ..     119     129 ..     116     133 .. 0.84
   2 ?    3.3   0.0     0.091        82      11      27 ..     162     176 ..     158     179 .. 0.86
   3 ?    4.0   0.0     0.059        53       7      20 ..     200     213 ..     194     217 .. 0.84
   4 !    6.9   0.0    0.0072       6.5       7      27 ..     242     260 ..     239     263 .. 0.90
   5 ?    0.1   0.0      0.95   8.5e+02      13      26 ..     290     301 ..     284     302 .. 0.82
   6 ?    4.3   0.0     0.046        41       7      20 ..     326     339 ..     325     343 .. 0.85
   7 ?    3.3   0.0     0.093        84       7      26 ..     368     385 ..     364     386 .. 0.81
   8 ?   -0.3   0.0       1.3   1.2e+03      10      23 ..     413     426 ..     409     428 .. 0.86

  Alignments for each domain:
  == domain 1  score: 0.9 bits;  conditional E-value: 0.53
                 HHHHTT-HHHH CS
       TPR_3  10 efynkkkyqeA 20 
                  ++ ++k++eA
  KOO23821.1 119 LLQAQGKLDEA 129
                 589*******9 PP

  == domain 2  score: 3.3 bits;  conditional E-value: 0.091
                 HHHTT-HHHHHHH..HH CS
       TPR_3  11 fynkkkyqeArelfsYa 27 
                 ++++++++eA  l  Y+
  KOO23821.1 162 LHDQGQLDEAGVL--YR 176
                 8*********999..65 PP

  == domain 3  score: 4.0 bits;  conditional E-value: 0.059
                 HHHHHHHTT-HHHH CS
       TPR_3   7 yAaefynkkkyqeA 20 
                 ++  +++++k++eA
  KOO23821.1 200 LGSLLHDQGKLDEA 213
                 7899*********9 PP

  == domain 4  score: 6.9 bits;  conditional E-value: 0.0072
                 HHHHHHHTT-HHHHHHH..HH CS
       TPR_3   7 yAaefynkkkyqeArelfsYa 27 
                 ++  +++++k++eA  l  Y+
  KOO23821.1 242 LGSLLHDQGKLDEASVL--YR 260
                 68899*********999..75 PP

  == domain 5  score: 0.1 bits;  conditional E-value: 0.95
                 HTT-HHHHHHH..H CS
       TPR_3  13 nkkkyqeArelfsY 26 
                  +++++eA  l  Y
  KOO23821.1 290 AQGQLDEASVL--Y 301
                 69******999..7 PP

  == domain 6  score: 4.3 bits;  conditional E-value: 0.046
                 HHHHHHHTT-HHHH CS
       TPR_3   7 yAaefynkkkyqeA 20 
                 ++  ++n++k++eA
  KOO23821.1 326 LGVLLHNQGKLDEA 339
                 57789********9 PP

  == domain 7  score: 3.3 bits;  conditional E-value: 0.093
                 HHHHHHHTT-HHHHHHH..H CS
       TPR_3   7 yAaefynkkkyqeArelfsY 26 
                 ++  ++ +++++eA  l  Y
  KOO23821.1 368 LGGLLQAQGQLDEAGVL--Y 385
                 56679*********999..6 PP

  == domain 8  score: -0.3 bits;  conditional E-value: 1.3
                 HHHHTT-HHHHHHH CS
       TPR_3  10 efynkkkyqeArel 23 
                  +++++++ eA+ l
  KOO23821.1 413 LLHDQGRLGEAETL 426
                 68*********998 PP

>> TPR_14  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.1   1.4    0.0014       1.3       3      29 ..     112     138 ..     110     148 .. 0.91
   2 !    9.0   0.1    0.0031       2.8       7      30 ..     158     181 ..     156     195 .. 0.87
   3 ?    6.6   0.1     0.019        17       7      30 ..     200     223 ..     199     236 .. 0.88
   4 !    8.2   0.0    0.0057       5.1       7      30 ..     242     265 ..     241     277 .. 0.88
   5 ?    5.0   0.2     0.061        55       7      26 ..     284     303 ..     283     309 .. 0.90
   6 ?    5.3   0.1     0.048        43       8      30 ..     327     349 ..     325     358 .. 0.87
   7 ?    1.7   0.2      0.67     6e+02       7      25 ..     368     386 ..     367     394 .. 0.86
   8 ?    5.7   0.2     0.035        31       6      27 ..     409     430 ..     406     439 .. 0.90
   9 ?    4.7   1.4     0.077        69       4      27 ..     449     472 ..     446     493 .. 0.84
  10 ?   -1.1   0.0       5.4   4.8e+03      22      41 ..     511     531 ..     485     534 .. 0.66

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.0014
      TPR_14   3 allalaeallalGdpdeAiallrrala 29 
                 ++ +l+++l a+G++deA  llr+al+
  KOO23821.1 112 LQDRLGRLLQAQGKLDEAGVLLREALE 138
                 67899********************98 PP

  == domain 2  score: 9.0 bits;  conditional E-value: 0.0031
      TPR_14   7 laeallalGdpdeAiallrralal 30 
                 l+e+l  +G++deA  l+r+al++
  KOO23821.1 158 LGELLHDQGQLDEAGVLYREALEA 181
                 7999******************95 PP

  == domain 3  score: 6.6 bits;  conditional E-value: 0.019
      TPR_14   7 laeallalGdpdeAiallrralal 30 
                 l+++l  +G++deA  llr+al++
  KOO23821.1 200 LGSLLHDQGKLDEAGVLLREALEA 223
                 789999****************96 PP

  == domain 4  score: 8.2 bits;  conditional E-value: 0.0057
      TPR_14   7 laeallalGdpdeAiallrralal 30 
                 l+++l  +G++deA  l+r+al++
  KOO23821.1 242 LGSLLHDQGKLDEASVLYREALEA 265
                 789999****************96 PP

  == domain 5  score: 5.0 bits;  conditional E-value: 0.061
      TPR_14   7 laeallalGdpdeAiallrr 26 
                 l+ +lla+G++deA  l+r+
  KOO23821.1 284 LGLLLLAQGQLDEASVLYRE 303
                 67899*********999985 PP

  == domain 6  score: 5.3 bits;  conditional E-value: 0.048
      TPR_14   8 aeallalGdpdeAiallrralal 30 
                 + +l ++G++deA  llr+al++
  KOO23821.1 327 GVLLHNQGKLDEAGVLLREALEA 349
                 567889**************985 PP

  == domain 7  score: 1.7 bits;  conditional E-value: 0.67
      TPR_14   7 laeallalGdpdeAiallr 25 
                 l+ +l a+G++deA  l+r
  KOO23821.1 368 LGGLLQAQGQLDEAGVLYR 386
                 677899********87777 PP

  == domain 8  score: 5.7 bits;  conditional E-value: 0.035
      TPR_14   6 alaeallalGdpdeAiallrra 27 
                  l+++l  +G++ eA++ll +a
  KOO23821.1 409 YLGRLLHDQGRLGEAETLLLEA 430
                 799***************9987 PP

  == domain 9  score: 4.7 bits;  conditional E-value: 0.077
      TPR_14   4 llalaeallalGdpdeAiallrra 27 
                 ++ la++ +a+G+ + A+al +++
  KOO23821.1 449 QAWLADVRRAQGRIESARALVDAR 472
                 6789***************99986 PP

  == domain 10  score: -1.1 bits;  conditional E-value: 5.4
      TPR_14  22 allrr.alalaPddaeawlll 41 
                 a+l+r +  l+P+++e+++  
  KOO23821.1 511 AALERmWTVLGPEHPETRRCA 531
                 334442344888988888765 PP

>> TPR_21  Tetratricopeptide repeat-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.4   1.3   0.00045       0.4     109     178 ..     106     184 ..      98     191 .. 0.69
   2 !    8.4   0.1    0.0018       1.6     130     178 ..     222     268 ..     199     286 .. 0.72
   3 ?    1.2   0.0      0.28   2.5e+02     155     175 ..     287     307 ..     282     316 .. 0.84
   4 ?    1.7   0.1       0.2   1.8e+02     153     177 ..     369     393 ..     329     407 .. 0.78
   5 ?   -1.8   0.1       2.5   2.2e+03     153     165 ..     453     465 ..     398     471 .. 0.51

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00045
      TPR_21 109 eelkalarlRLarvllaekkydeAlktLeakkeea.........faalvaelrGDilvaqgkldeAraaYqaAlaalee 178
                 e  ++  + RL r+l a++k+deA  +L ++ e+           +    +  G++l  qg+ldeA   Y++Al+a  +
  KOO23821.1 106 ERATSALQDRLGRLLQAQGKLDEAGVLLREALEAMratlgdrhpHTLVSMDNLGELLHDQGQLDEAGVLYREALEASRA 184
                 55555667799999999999999877775444332000011111344456788********************998765 PP

  == domain 2  score: 8.4 bits;  conditional E-value: 0.0018
      TPR_21 130 deAlktLeakkeeafaalvaelrGDilvaqgkldeAraaYqaAlaalee 178
                 ++  +tL + ++++ ++   +  G +l  qgkldeA   Y++Al+a  +
  KOO23821.1 222 EASRATLGDRHPDTLRSI--NNLGSLLHDQGKLDEASVLYREALEASRA 268
                 444444455555544433..33599*******************99876 PP

  == domain 3  score: 1.2 bits;  conditional E-value: 0.28
      TPR_21 155 ilvaqgkldeAraaYqaAlaa 175
                 +l+aqg+ldeA   Y++ l+a
  KOO23821.1 287 LLLAQGQLDEASVLYREDLEA 307
                 789999999999999998876 PP

  == domain 4  score: 1.7 bits;  conditional E-value: 0.2
      TPR_21 153 GDilvaqgkldeAraaYqaAlaale 177
                 G +l aqg+ldeA   Y++ l+a  
  KOO23821.1 369 GGLLQAQGQLDEAGVLYREDLEASR 393
                 6788899999999999888877765 PP

  == domain 5  score: -1.8 bits;  conditional E-value: 2.5
      TPR_21 153 GDilvaqgkldeA 165
                  D+  aqg+++ A
  KOO23821.1 453 ADVRRAQGRIESA 465
                 2444444444444 PP

>> GP44  Gene product 44
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.0       2.2     2e+03      32      68 ..     118     155 ..     109     173 .. 0.67
   2 ?    1.9   0.0       0.3   2.7e+02      32      61 ..     160     189 ..     153     212 .. 0.84
   3 !    7.4   0.0    0.0058       5.2      34      82 ..     246     295 ..     234     300 .. 0.85
   4 ?    3.8   0.0     0.075        67      38      80 ..     292     335 ..     286     354 .. 0.77
   5 ?   -1.0   0.0       2.3     2e+03      34      61 ..     372     399 ..     364     408 .. 0.83

  Alignments for each domain:
  == domain 1  score: -0.9 bits;  conditional E-value: 2.2
        GP44  32 elmkeiaevdensvrykgatedatisldge.llslwqr 68 
                  l+++ +++de  v  ++a e+ + +l+++   +l  +
  KOO23821.1 118 RLLQAQGKLDEAGVLLREALEAMRATLGDRhPHTLVSM 155
                 56777788888888888888888888886644444444 PP

  == domain 2  score: 1.9 bits;  conditional E-value: 0.3
        GP44  32 elmkeiaevdensvrykgatedatisldge 61 
                 el+++ +++de  v y++a e+++ +l+++
  KOO23821.1 160 ELLHDQGQLDEAGVLYREALEASRATLGDR 189
                 56788899****************999976 PP

  == domain 3  score: 7.4 bits;  conditional E-value: 0.0058
        GP44  34 mkeiaevdensvrykgatedatisldge.llslwqrnliaalfyaDGkak 82 
                 +++ +++de sv y++a e+++ +l+++   +l   n ++ l  a G+ +
  KOO23821.1 246 LHDQGKLDEASVLYREALEASRATLGDRhPDTLTSINNLGLLLLAQGQLD 295
                 677899********************886678888888999999999876 PP

  == domain 4  score: 3.8 bits;  conditional E-value: 0.075
        GP44  38 aevdensvrykgatedatisldge.llslwqrnliaalfyaDGk 80 
                 +++de sv y++  e+++++l+++   +l     +++l +  Gk
  KOO23821.1 292 GQLDEASVLYREDLEASRVTLGDRhPDTLTSIGNLGVLLHNQGK 335
                 789*******************8754444444445666666666 PP

  == domain 5  score: -1.0 bits;  conditional E-value: 2.3
        GP44  34 mkeiaevdensvrykgatedatisldge 61 
                 +++ +++de  v y++  e+++ +l+++
  KOO23821.1 372 LQAQGQLDEAGVLYREDLEASRATLGDR 399
                 6777899999999999999999998875 PP

>> Sec16_C  Sec23-binding domain of Sec16
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.6   0.0       0.1        90     112     189 ..     146     222 ..     106     229 .. 0.73
   2 ?    3.1   0.0     0.068        61     113     142 ..     231     260 ..     223     276 .. 0.81
   3 ?    3.4   0.0     0.056        50     112     187 ..     272     346 ..     264     351 .. 0.67
   4 ?   -1.2   0.0       1.4   1.3e+03     113     141 ..     357     385 ..     348     398 .. 0.86

  Alignments for each domain:
  == domain 1  score: 2.6 bits;  conditional E-value: 0.1
                 TS--HHHHHHHHHHHHHHHTT-HHHHHHHHHHT-SSS.............BSSTTS--B--SSSTTSHHHHHHHHHHH CS
     Sec16_C 112 nrspsdseaLtalGdlLaskgrveaahicyllalsqtslfggldspsarlvllgadhvkfessfakdlesilltEiyE 189
                  r p     + +lG+lL  +g+   a ++y  al+++   +  d +  +l  +g+     ++++  d+ ++ll E +E
  KOO23821.1 146 DRHPHTLVSMDNLGELLHDQGQLDEAGVLYREALEAS-RATLGDRHPDTLESIGNLGSLLHDQGKLDEAGVLLREALE 222
                 5556666678899999999999999999998885553.3333344445566677666666666666666666666655 PP

  == domain 2  score: 3.1 bits;  conditional E-value: 0.068
                 S--HHHHHHHHHHHHHHHTT-HHHHHHHHH CS
     Sec16_C 113 rspsdseaLtalGdlLaskgrveaahicyl 142
                 r p+  + +++lG+lL  +g+   a+++y 
  KOO23821.1 231 RHPDTLRSINNLGSLLHDQGKLDEASVLYR 260
                 56667899*******************995 PP

  == domain 3  score: 3.4 bits;  conditional E-value: 0.056
                 TS--HHHHHHHHHHHHHHHTT-HHHHHHHHHHT-SSS.............BSSTTS--B--SSSTTSHHHHHHHHH CS
     Sec16_C 112 nrspsdseaLtalGdlLaskgrveaahicyllalsqtslfggldspsarlvllgadhvkfessfakdlesilltEi 187
                  r p+  + +++lG lL+++g+   a+++y   l+++  ++  d +  +l+ +g+  v  ++++  d+ ++ll E 
  KOO23821.1 272 DRHPDTLTSINNLGLLLLAQGQLDEASVLYREDLEAS-RVTLGDRHPDTLTSIGNLGVLLHNQGKLDEAGVLLREA 346
                 5666778999*******************96654443.33333444444566666666666666666666666665 PP

  == domain 4  score: -1.2 bits;  conditional E-value: 1.4
                 S--HHHHHHHHHHHHHHHTT-HHHHHHHH CS
     Sec16_C 113 rspsdseaLtalGdlLaskgrveaahicy 141
                 r ps    + +lG lL ++g+   a ++y
  KOO23821.1 357 RHPSTLVSISNLGGLLQAQGQLDEAGVLY 385
                 55666678999*************99998 PP

>> HisKA_3  Histidine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   1.5    0.0015       1.3      36      67 ..     117     151 ..      94     152 .. 0.79
   2 ?    2.6   0.0      0.22     2e+02      39      67 ..     165     193 ..     155     194 .. 0.89
   3 ?    3.6   0.0       0.1        93      39      67 ..     207     235 ..     201     236 .. 0.89
   4 ?    2.2   0.0       0.3   2.7e+02      39      67 ..     249     277 ..     243     278 .. 0.89
   5 ?   -1.8   0.0       5.2   4.6e+03      38      67 ..     290     319 ..     289     320 .. 0.85
   6 ?    3.7   0.1       0.1        92      38      67 ..     332     361 ..     304     362 .. 0.83
   7 ?    1.6   0.0      0.45   4.1e+02      37      67 ..     373     403 ..     365     404 .. 0.90
   8 ?   -1.3   0.6       3.7   3.3e+03      37      62 ..     436     461 ..     419     478 .. 0.67
   9 ?   -2.6   0.0         9   8.1e+03      22      45 ..     489     516 ..     487     538 .. 0.58

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 0.0015
                 H...HHHHHHHHHHHHHHHHHHHHHHHHHHHTTHH CS
     HisKA_3  36 e...kaaeqlreieelarealqevRrllhnLrpaa 67 
                 +   +a+ +l+e+  l+real+ +R++l++ +p +
  KOO23821.1 117 GrllQAQGKLDEAGVLLREALEAMRATLGDRHPHT 151
                 25559***********************9988876 PP

  == domain 2  score: 2.6 bits;  conditional E-value: 0.22
                 HHHHHHHHHHHHHHHHHHHHHHHHHTTHH CS
     HisKA_3  39 aeqlreieelarealqevRrllhnLrpaa 67 
                 + ql+e+  l real+  R++l++ +p++
  KOO23821.1 165 QGQLDEAGVLYREALEASRATLGDRHPDT 193
                 6799******************9988876 PP

  == domain 3  score: 3.6 bits;  conditional E-value: 0.1
                 HHHHHHHHHHHHHHHHHHHHHHHHHTTHH CS
     HisKA_3  39 aeqlreieelarealqevRrllhnLrpaa 67 
                 + +l+e+  l+real+  R++l++ +p++
  KOO23821.1 207 QGKLDEAGVLLREALEASRATLGDRHPDT 235
                 578999****************9988876 PP

  == domain 4  score: 2.2 bits;  conditional E-value: 0.3
                 HHHHHHHHHHHHHHHHHHHHHHHHHTTHH CS
     HisKA_3  39 aeqlreieelarealqevRrllhnLrpaa 67 
                 + +l+e+  l real+  R++l++ +p++
  KOO23821.1 249 QGKLDEASVLYREALEASRATLGDRHPDT 277
                 57899999**************9988876 PP

  == domain 5  score: -1.8 bits;  conditional E-value: 5.2
                 HHHHHHHHHHHHHHHHHHHHHHHHHHTTHH CS
     HisKA_3  38 aaeqlreieelarealqevRrllhnLrpaa 67 
                 a+ ql+e+  l re l+  R +l++ +p++
  KOO23821.1 290 AQGQLDEASVLYREDLEASRVTLGDRHPDT 319
                 688999999999999999999999888776 PP

  == domain 6  score: 3.7 bits;  conditional E-value: 0.1
                 HHHHHHHHHHHHHHHHHHHHHHHHHHTTHH CS
     HisKA_3  38 aaeqlreieelarealqevRrllhnLrpaa 67 
                  + +l+e+  l+real+  R++l++ +p++
  KOO23821.1 332 NQGKLDEAGVLLREALEAKRATLGDRHPST 361
                 57899******************9988876 PP

  == domain 7  score: 1.6 bits;  conditional E-value: 0.45
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHTTHH CS
     HisKA_3  37 kaaeqlreieelarealqevRrllhnLrpaa 67 
                 +a+ ql+e+  l re l+  R++l++ +p++
  KOO23821.1 373 QAQGQLDEAGVLYREDLEASRATLGDRHPDT 403
                 799*********************9988876 PP

  == domain 8  score: -1.3 bits;  conditional E-value: 3.7
                 HHHHHHHHHHHHHHHHHHHHHHHHHH CS
     HisKA_3  37 kaaeqlreieelarealqevRrllhn 62 
                 ++ ++ ++ + +++  l++vRr+ ++
  KOO23821.1 436 ATLAEGQRTRLRSQAWLADVRRAQGR 461
                 55566667777777777777776544 PP

  == domain 9  score: -2.6 bits;  conditional E-value: 9
                 HHHHHHHHHTTT-HH....HHHHHHHHH CS
     HisKA_3  22 lqlelakrllekdpe....kaaeqlrei 45 
                 l+le+++++le +++     ++++l+++
  KOO23821.1 489 LMLEAVHARLECAAGgglsPLQAALERM 516
                 6777777777666554444445555544 PP

>> TPR_6  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.5   0.4      0.07        63       5      27 ..     115     137 ..     110     139 .. 0.88
   2 ?    4.1   0.0     0.093        84       3      28 ..     155     180 ..     153     181 .. 0.87
   3 ?   -0.9   0.0       3.7   3.3e+03       6      27 ..     200     221 ..     199     223 .. 0.77
   4 ?    0.9   0.0         1     9e+02       6      28 ..     242     264 ..     241     265 .. 0.80
   5 ?    4.0   0.0      0.11        94       5      24 ..     283     302 ..     283     303 .. 0.90
   6 ?    0.8   0.0       1.1   9.6e+02       6      27 ..     326     347 ..     325     349 .. 0.85
   7 ?   -0.2   0.0       2.3   2.1e+03       9      24 ..     371     386 ..     367     387 .. 0.73
   8 ?   -0.2   0.1       2.3     2e+03       5      21 ..     451     467 ..     448     468 .. 0.86

  Alignments for each domain:
  == domain 1  score: 4.5 bits;  conditional E-value: 0.07
                 HHHHHHHHHHHHHHHHHHHHHHH CS
       TPR_6   5 klalsyrklgdtdkAlealerli 27 
                 +l+++++++g+ d+A  +l++ +
  KOO23821.1 115 RLGRLLQAQGKLDEAGVLLREAL 137
                 89*************99999876 PP

  == domain 2  score: 4.1 bits;  conditional E-value: 0.093
                 HHHHHHHHHHHHHHHHHHHHHHHHHH CS
       TPR_6   3 lyklalsyrklgdtdkAlealerlik 28 
                 + +l++++  +g+ d+A  ++++ ++
  KOO23821.1 155 MDNLGELLHDQGQLDEAGVLYREALE 180
                 6789*99**99*******99998875 PP

  == domain 3  score: -0.9 bits;  conditional E-value: 3.7
                 HHHHHHHHHHHHHHHHHHHHHH CS
       TPR_6   6 lalsyrklgdtdkAlealerli 27 
                 l+ ++  +g+ d+A  +l++ +
  KOO23821.1 200 LGSLLHDQGKLDEAGVLLREAL 221
                 666666789*****99998876 PP

  == domain 4  score: 0.9 bits;  conditional E-value: 1
                 HHHHHHHHHHHHHHHHHHHHHHH CS
       TPR_6   6 lalsyrklgdtdkAlealerlik 28 
                 l+ ++  +g+ d+A  ++++ ++
  KOO23821.1 242 LGSLLHDQGKLDEASVLYREALE 264
                 666667799********999875 PP

  == domain 5  score: 4.0 bits;  conditional E-value: 0.11
                 HHHHHHHHHHHHHHHHHHHH CS
       TPR_6   5 klalsyrklgdtdkAleale 24 
                 +l+l+++++g+ d+A  +++
  KOO23821.1 283 NLGLLLLAQGQLDEASVLYR 302
                 599************99987 PP

  == domain 6  score: 0.8 bits;  conditional E-value: 1.1
                 HHHHHHHHHHHHHHHHHHHHHH CS
       TPR_6   6 lalsyrklgdtdkAlealerli 27 
                 l+ ++ ++g+ d+A  +l++ +
  KOO23821.1 326 LGVLLHNQGKLDEAGVLLREAL 347
                 899999999*****99999876 PP

  == domain 7  score: -0.2 bits;  conditional E-value: 2.3
                 HHHHHHHHHHHHHHHH CS
       TPR_6   9 syrklgdtdkAleale 24 
                 +++++g+ d+A  +++
  KOO23821.1 371 LLQAQGQLDEAGVLYR 386
                 566688*****88876 PP

  == domain 8  score: -0.2 bits;  conditional E-value: 2.3
                 HHHHHHHHHHHHHHHHH CS
       TPR_6   5 klalsyrklgdtdkAle 21 
                 +la  +r++g+ + A++
  KOO23821.1 451 WLADVRRAQGRIESARA 467
                 8999****99**99987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (557 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       303  (0.0169); expected 358.6 (0.02)
Passed bias filter:                      217  (0.0121033); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                        20  (0.00111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              20  [number of targets reported over threshold]
# CPU time: 0.62u 0.25s 00:00:00.87 Elapsed: 00:00:00.49
# Mc/sec: 3432.39
//
Query:       KOO23822.1  [L=218]
Description: intraflagellar transport protein 43 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      2e-23   83.1   8.2      2e-23   83.1   8.2    2.0  2  IFT43     Intraflagellar transport protein 43


Domain annotation for each model (and alignments):
>> IFT43  Intraflagellar transport protein 43
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.5   0.1     0.035   6.3e+02      53      68 ..      26      41 ..      21      46 .. 0.81
   2 !   83.1   8.2   1.1e-27     2e-23      15     135 ..      62     186 ..      47     187 .. 0.81

  Alignments for each domain:
  == domain 1  score: 0.5 bits;  conditional E-value: 0.035
       IFT43 53 eeeDletqvAaaPsiq 68
                ++eDl+++v  aP + 
  KOO23822.1 26 ADEDLDSSVPTAPAAG 41
                699*******999865 PP

  == domain 2  score: 83.1 bits;  conditional E-value: 1.1e-27
       IFT43  15 krkeasaegederlrkqteves......DdeeedipvIPdLeeveeeDletqvAaaPsiqvnrvqtleeLDadlkkaaalvtld.dgiDLslLtkvLap 106
                 +r+++sa+ +de++++ t++        Dd++    +IPdLe++ ee l+ +vA+aPs++++rvqt++eLD+++  a  l +++  g+DLs+L + L+p
  KOO23822.1  62 SRRRKSANDDDEEASSVTTQSIakmesvDDDDGPSSFIPDLEDE-EEQLTLTVAQAPSLKSSRVQTIRELDEEIDMA--LPSTSeIGVDLSVLQSFLTP 157
                 34555555555555554444335567776666689******996.678**************************998..7666659************* PP

       IFT43 107 eeeveeedeaWdwdslftevsselqaekd 135
                 +++v eed++W+++  ++ ++se+q e++
  KOO23822.1 158 QQQVLEEDVPWNFNLELQTIASEMQREHE 186
                 *************************9987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (218 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       619  (0.0345251); expected 358.6 (0.02)
Passed bias filter:                      269  (0.0150036); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.25s 00:00:00.68 Elapsed: 00:00:00.41
# Mc/sec: 1597.38
//
Query:       KOO23823.1  [L=368]
Description: pp2c like protein phosphatase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.2e-40  138.0   0.0    5.6e-40  137.6   0.0    1.1  1  PP2C      Protein phosphatase 2C
    0.00094   19.1   0.0      0.002   18.1   0.0    1.5  1  SpoIIE    Stage II sporulation protein E (SpoIIE)


Domain annotation for each model (and alignments):
>> PP2C  Protein phosphatase 2C
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  137.6   0.0   6.2e-44   5.6e-40      30     252 ..      25     260 ..       4     266 .. 0.85

  Alignments for each domain:
  == domain 1  score: 137.6 bits;  conditional E-value: 6.2e-44
                 CCCCCEEEEEEEEES..SSHHHHHHHHHHHHHHHHHHHCHTTHHHHHHHHHHHHHHHHHHHHHHHHH.CHCCT-EEEEEEEEEETTEEEEEEESS-EEE CS
        PP2C  30 gkssvsffavfdghg..gseaakyarehleeilksqksfeelekleqalrksfladtdeelksskan.tepsksGstavvalirgtklyvAnvGDSrav 125
                 g  ++++++vfdghg  g++a++++ ++l+ +l++  +     ++ ++l+  + + + e l s ++  ++ ++ G+t+ v ++ g++l +A  GDSra+
  KOO23823.1  25 GSLNEALLCVFDGHGskGEKASEFCMTQLPVLLDKDHDALLT-DPFECLSRNIIK-LNELLFS-STLgQAAMSMGTTSNVLYMKGEELWCACSGDSRAI 120
                 577899********966789**********888877777777.99**********.8899988.45534899*************************** PP

                 EEETTEEE...EECS---STTSHHHHHHHHHTT--EEE.....CCEEETTT....BSBSB-EE-GGGTCCCCCCSTSB---EEEEEEE-......TT.E CS
        PP2C 126 Lcrkgnak...keltedHkpsdedEreRIeeaggsvsn.....gegrvngs....LavsRalGDlelkpketeeqlvsaePdvtsvklt......ee.d 205
                 L+++++ +   + l+edHkp+++ Er RIe+agg+vs+     +  rv  +    La+sR++GD e k+       v+++P+v + +l+       + d
  KOO23823.1 121 LASRKDGRivaTNLSEDHKPDLPTERVRIEAAGGFVSEsgpggRPSRVWANgrvgLAMSRSIGDGECKK-----VGVIPDPEVKKFTLKppkehgADgD 214
                 **9999999****************************9996655556655599***************8.....69********776652222225779 PP

                 EEEEEE-HHHHTTSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHC CS
        PP2C 206 efliLacdGlwdvlsdqeavdlvrdelekkkspeevaeelvdeaiar 252
                  f+iLa+dG+w+ +++qea+++v    e    ++e+++ lv ea +r
  KOO23823.1 215 LFVILASDGVWEFIDSQEAAEIVALSHER-PHASEACDLLVSEAADR 260
                 9**********************999985.799********999877 PP

>> SpoIIE  Stage II sporulation protein E (SpoIIE)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.1   0.0   2.3e-07     0.002     124     189 ..     213     276 ..     182     278 .. 0.75

  Alignments for each domain:
  == domain 1  score: 18.1 bits;  conditional E-value: 2.3e-07
                 TE.EEEEESCCCCSSSHHHHHHCCCHHCHHHHCT.....HCCHHHHHHHHHHH...HTTSSSSS-EEEEE CS
      SpoIIE 124 gd.tlllyTDGvtEardsdgelfgkerllallasaegesleelldalveelle...lgsgeleDDitllv 189
                 gd  ++l++DGv E  ds++      + +al +++   +++e +d lv+e+ +   +++g+ +DDit ++
  KOO23823.1 213 GDlFVILASDGVWEFIDSQEAA----EIVALSHER--PHASEACDLLVSEAADrwrREEGNYRDDITAII 276
                 4414799*********777777....666666644..459**********999999999********986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (368 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       290  (0.0161749); expected 358.6 (0.02)
Passed bias filter:                      263  (0.014669); expected 358.6 (0.02)
Passed Vit filter:                        11  (0.000613531); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.41u 0.26s 00:00:00.67 Elapsed: 00:00:00.39
# Mc/sec: 2821.57
//
Query:       KOO23824.1  [L=212]
Description: member ras oncogene family [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.2e-59  200.6   1.1    1.3e-59  200.4   1.1    1.0  1  Ras          Ras family
    6.2e-35  120.0   0.2    1.1e-34  119.2   0.1    1.4  2  Roc          Ras of Complex, Roc, domain of DAPkinase
    7.6e-21   74.3   0.2    9.7e-21   74.0   0.2    1.1  1  Arf          ADP-ribosylation factor family
    3.1e-08   33.3   0.2    4.5e-08   32.7   0.2    1.3  1  Gtr1_RagA    Gtr1/RagA G protein conserved region
      2e-06   27.8   0.0    6.1e-06   26.3   0.0    1.7  2  MMR_HSR1     50S ribosome-binding GTPase
    3.8e-06   26.6   0.3    9.7e-06   25.2   0.2    1.6  2  GTP_EFTU     Elongation factor Tu GTP binding domain
    0.00032   20.7   1.1       0.76    9.7   0.0    2.7  3  RsgA_GTPase  RsgA GTPase
    0.00091   19.6   0.0      0.002   18.5   0.0    1.6  2  AAA_16       AAA ATPase domain
    0.00099   18.6   0.4     0.0038   16.7   0.0    1.9  2  SRPRB        Signal recognition particle receptor beta subuni
  ------ inclusion threshold ------
      0.014   14.9   0.1      0.062   12.8   0.0    1.9  2  AAA_7        P-loop containing dynein motor region
      0.015   15.6   0.1      0.078   13.3   0.1    2.0  2  AAA_22       AAA domain
      0.027   14.8   0.2      0.039   14.3   0.2    1.2  1  Gp-FAR-1     Nematode fatty acid retinoid binding protein (Gp
      0.034   13.7   0.2       0.45   10.0   0.2    2.0  1  FeoB_N       Ferrous iron transport protein B
       0.11   12.6   0.3         16    5.7   0.1    2.4  2  ABM          Antibiotic biosynthesis monooxygenase
       0.14   12.0   0.0       0.31   10.8   0.0    1.5  1  AAA_29       P-loop containing region of AAA domain


Domain annotation for each model (and alignments):
>> Ras  Ras family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  200.4   1.1   1.1e-62   1.3e-59       1     161 [.      14     174 ..      14     175 .. 0.98

  Alignments for each domain:
  == domain 1  score: 200.4 bits;  conditional E-value: 1.1e-62
                 EEEEEESTTSSHHHHHHHHHHSSCSSSCTTTSSEEEEEEEEEETTEEEEEEEEEETTSGGGHHHHHHHHTTESEEEEEEETTBHHHHHTHHHHHHHHHH CS
         Ras   1 KlvlvGdsavGKtslllrfvkdkFkeeyesTigvdfytkeievdgkevkleiwDTAGqeefkslrelyyrdaegillvyditsresfenvkkwveeikr 99 
                 K++l+Gd +vGK+s+llrf++d+F+e++ sTigvdf +k++++ gk+vkl+iwDTAGqe+f++l+++yyr+++g++lvyd+++resf+++++w+ee++ 
  KOO23824.1  14 KVLLIGDAGVGKSSILLRFTDDSFEEQMASTIGVDFRVKTVTLGGKTVKLTIWDTAGQERFRTLTSSYYRGCHGVILVYDVNERESFTHLQQWLEELEL 112
                 89***********************************************************************************************99 PP

                 HST.TTSEEEEEEETTTGGGG-SS-HHHHHHHHHHHTSEEEEEBTTTTCTHHHHHHHHHHHHH CS
         Ras 100 vae.envpivLvGnKvDleekravsteegeelakelglkfletSAktnenveeafeellreil 161
                 + + ++++ +LvGnK+D+++ r+v+ ee+e++a+++ ++++etSAkt+e++++afee++++il
  KOO23824.1 113 YSTtQHFVKLLVGNKIDVKD-RQVTVEEAETFARRQAMMYIETSAKTREGIRQAFEEVVQKIL 174
                 9887889************7.***************************************996 PP

>> Roc  Ras of Complex, Roc, domain of DAPkinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  119.2   0.1   9.4e-38   1.1e-34       1     119 [.      14     129 ..      14     130 .. 0.90
   2 ?   -2.7   0.0       5.4   6.4e+03      76     104 ..     143     171 ..     138     180 .. 0.54

  Alignments for each domain:
  == domain 1  score: 119.2 bits;  conditional E-value: 9.4e-38
                 EEEEESSTTSSHHHHHHCHCT-CCC-EEETTTTEEEEEEECGGSGGCTTBTTTTCEEEEEEEE-SGGCTTTT-HHHHCTSCEEEEEEE...GHHHHCHH CS
         Roc   1 KvvlvGdsgvGKtsllkrfvedkfsekekstigvdfltkevtkikgvendkkvkkvklniWDtaGqerfrslhplylreaalailvyd...srssenlk 96 
                 Kv+l+Gd+gvGK+s+l rf++d+f+e+  stigvdf  k+v ++ g       k+vkl iWDtaGqerfr+l+++y+r+ + +ilvyd   ++s+++l+
  KOO23824.1  14 KVLLIGDAGVGKSSILLRFTDDSFEEQMASTIGVDFRVKTV-TLGG-------KTVKLTIWDTAGQERFRTLTSSYYRGCHGVILVYDvneRESFTHLQ 104
                 9************************************9987.4544.......6899*******************************8644467899* PP

                 HHHHHHHHHCSSS-E..EEEEE-TT CS
         Roc  97 eWlkelkkvagkspv..ilvgnkiD 119
                 +Wl+el+ +++++ +  +lvgnkiD
  KOO23824.1 105 QWLEELELYSTTQHFvkLLVGNKID 129
                 *********987754127******9 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 5.4
                 HHCTSCEEEEEEEGHHHHCHHHHHHHHHH CS
         Roc  76 ylreaalailvydsrssenlkeWlkelkk 104
                 + r++a++ + + +++ e +++ ++e+ +
  KOO23824.1 143 FARRQAMMYIETSAKTREGIRQAFEEVVQ 171
                 55555555555555555555555555544 PP

>> Arf  ADP-ribosylation factor family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   74.0   0.2   8.2e-24   9.7e-21      15     175 .]      13     173 ..       6     173 .. 0.88

  Alignments for each domain:
  == domain 1  score: 74.0 bits;  conditional E-value: 8.2e-24
                 EEEEEEESTTSSHHHHHHHHHHSSCEE.CSSSSS..EEEEEEEE..TTEEEEEEEE-SSGGGGGGGGGGCTTESEEEEEEETT-CTTHHHHHHHHHHHC CS
         Arf  15 lrilllGLDnaGKtTilkklkleelvt.tvPTig..fnveelei..knlkftvwDvGGqeklRplWknYfektdavifvvDsadreRleeakeeLkall 108
                 +++ll+G  + GK+ il +++++++++ +  Tig  f v++++   k++k+t+wD  Gqe+ R l ++Y++  ++vi v D+++re +++ ++ L++l 
  KOO23824.1  13 FKVLLIGDAGVGKSSILLRFTDDSFEEqMASTIGvdFRVKTVTLggKTVKLTIWDTAGQERFRTLTSSYYRGCHGVILVYDVNERESFTHLQQWLEELE 111
                 79*********************9987466787644889999987799*************************************************** PP

                 TSGCCTTSEEEEEEE-TTSTTSS-HHHHHHHTTGGGSSSSSSEEEEEEBTTTTBTHHHHHHHHHHHH CS
         Arf 109 eeeelkevallvlaNKqDlpealseeelrellgleelkgkrkleiqkcsavkgeglkeglewlsesi 175
                   ++ ++ + l+++NK+D+++   + e +e+ +      ++ +  +++sa ++eg+ +++e ++++i
  KOO23824.1 112 LYSTTQHFVKLLVGNKIDVKDRQVTVEEAETFAR-----RQAMMYIETSAKTREGIRQAFEEVVQKI 173
                 *******************987665554444433.....456677899*************999875 PP

>> Gtr1_RagA  Gtr1/RagA G protein conserved region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.7   0.2   3.8e-11   4.5e-08       1     172 [.      14     170 ..      14     183 .. 0.68

  Alignments for each domain:
  == domain 1  score: 32.7 bits;  conditional E-value: 3.8e-11
   Gtr1_RagA   1 kvLLmGksgsGKtsmrsiiFdnylardtlrlgatidveksevrflg.nltlnlwDcgGqeafveeylssqkeeifrnvgvliyVfDvesreleedletl 98 
                 kvLL+G  g GK+s+    F   + ++ +  ++ +d + ++v + g  ++l +wD  Gqe+f + +     ++ +r +  +i V Dv+    +e++++l
  KOO23824.1  14 KVLLIGDAGVGKSSILLR-FTDDSFEEQMASTIGVDFRVKTVTLGGkTVKLTIWDTAGQERFRTLT-----SSYYRGCHGVILVYDVN---ERESFTHL 103
                 8**************866.7777777777778888888888887662579**********998775.....7889*************...56778888 PP

   Gtr1_RagA  99 keilealrqyspeakvfvli..hKmDliqedereeifeerkeeireeieklekeeiqffaTSi.wdeslykAfssiv 172
                 ++ le+l  ys   ++  l+  +K+D  +   r+ ++ee ++  r+++         +  TS    e + +Af ++v
  KOO23824.1 104 QQWLEELELYSTTQHFVKLLvgNKIDVKD---RQVTVEEAETFARRQAM-------MYIETSAkTREGIRQAFEEVV 170
                 99999999998877765554356777653...33333333322222221.......122222212344555555555 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.3   0.0   5.1e-09   6.1e-06       1     103 [.      14     109 ..      14     137 .. 0.71
   2 ?   -0.7   0.0       1.3   1.5e+03      60      75 ..     156     171 ..     119     194 .. 0.61

  Alignments for each domain:
  == domain 1  score: 26.3 bits;  conditional E-value: 5.1e-09
                 EEEEEESTTSSHHHHHHHHHTS..TEEESSSTTSSSSEEEEEEEETTEEEEEEECGGCSSHHHHHHHHHHHHHHHHCTSEEEEEEETT.TTCSHHHHHH CS
    MMR_HSR1   1 evaivGrpNvGKStLinaltge..kaivsdkpgtTrdinegrvklkgkeielvDtpGliegaseekglgkaflaleeadlillvvdas.eeklkpldee 96 
                 +v+++G   vGKS+++ + t++  + +++++ g+   +++ ++  k  +++++Dt+G  e   + + l+ ++ +   ++ ++lv d++ +e+++    +
  KOO23824.1  14 KVLLIGDAGVGKSSILLRFTDDsfEEQMASTIGVDFRVKTVTLGGKTVKLTIWDTAG-QE---RFRTLTSSYYR--GCHGVILVYDVNeRESFT----H 102
                 589******************85556777777777777777776555899*******.54...33366666663..59********88422343....4 PP

                 HHHHHHH CS
    MMR_HSR1  97 leellee 103
                 l+++lee
  KOO23824.1 103 LQQWLEE 109
                 4444433 PP

  == domain 2  score: -0.7 bits;  conditional E-value: 1.3
                 HHHHHHHHHHHHHHHC CS
    MMR_HSR1  60 aseekglgkaflalee 75 
                 a++++g+++af+++ +
  KOO23824.1 156 AKTREGIRQAFEEVVQ 171
                 3333344444444333 PP

>> GTP_EFTU  Elongation factor Tu GTP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.0       1.4   1.6e+03       4      23 ..      13      32 ..      11      44 .. 0.77
   2 !   25.2   0.2   8.2e-09   9.7e-06      51     190 ..      42     171 ..      21     175 .. 0.70

  Alignments for each domain:
  == domain 1  score: -1.6 bits;  conditional E-value: 1.4
                EEEEEEESTTSSHHHHHHHH CS
    GTP_EFTU  4 rnigiighvDhGKtTLtdrL 23
                 ++ +ig+   GK++++ r 
  KOO23824.1 13 FKVLLIGDAGVGKSSILLRF 32
                5688999999****987655 PP

  == domain 2  score: 25.2 bits;  conditional E-value: 8.2e-09
                 HHTSCSS..CEEEEEETTCSSEEEEEEEESSSGGGHHHHHHHHHT-SEEEEEEETTTB.....STHHHHHHHHHHHHTTTEEEEEEESCGSTHHHHHHH CS
    GTP_EFTU  51 ergiTik..saaisleketkkylinliDtPGHvdFskevirglrvlDgavlvvdaveG.....vepqteevlrlalkegvpiivfiNKmDrlkaelkei 142
                 +  i ++  +++++l   +k+ ++++ Dt G + F   ++  +r ++g++lv d++e       ++  ee+     +++    ++ NK+D  + +   +
  KOO23824.1  42 ASTIGVDfrVKTVTLG--GKTVKLTIWDTAGQERFRTLTSSYYRGCHGVILVYDVNEResfthLQQWLEELELYSTTQHFVKLLVGNKIDVKDRQ--VT 136
                 3344444004555555..**************************************887787566666666666667777799999****87554..45 PP

                 HHHHHHHHHHHHHHHHHHHHTTTTTEEEEEEBTTTTBTHHHHHHHHHH CS
    GTP_EFTU 143 veevkqklsrkeeklekygekgekevpvvfgSalkgegvktllealve 190
                 vee++ ++           +++ + +  + +Sa++ eg+++ +e +v+
  KOO23824.1 137 VEEAE-TF-----------ARR-QAMMYIETSAKTREGIRQAFEEVVQ 171
                 55555.45...........122.2455677777777777776666666 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.7   0.0   0.00064      0.76     102     120 ..      15      33 ..      12      44 .. 0.82
   2 ?    0.5   0.0      0.42   5.1e+02      56      99 ..      66     109 ..      57     116 .. 0.72
   3 !    8.5   0.2    0.0015       1.8      44      98 ..     116     170 ..      71     175 .. 0.76

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 0.00064
                  EEEECSTTSSHHHHHHHHC CS
  RsgA_GTPase 102 svlvGqSGvGKStLinall 120
                  ++l+G  GvGKS+++ +++
   KOO23824.1  15 VLLIGDAGVGKSSILLRFT 33 
                  579**********987665 PP

  == domain 2  score: 0.5 bits;  conditional E-value: 0.42
                  GGG--HHHHHHHHHHHHHHTTSEEEE--TTTHTTHHHHHHHCTT CS
  RsgA_GTPase  56 iDlleeeeeleelkeelealgyevllvsaktkegleelkellkd 99 
                   D + +e+  + +++ ++ +   +l+ +++++e++++l+++l++
   KOO23824.1  66 WDTAGQERFRTLTSSYYRGCHGVILVYDVNERESFTHLQQWLEE 109
                  55566666333445567777778889999999999999999986 PP

  == domain 3  score: 8.5 bits;  conditional E-value: 0.0015
                  HTT-EEEEEEE-GGG--HHHHHHHHHHHHHHTTSEEEE--TTTHTTHHHHHHHCT CS
  RsgA_GTPase  44 ekgiepvivlnKiDlleeeeeleelkeelealgyevllvsaktkegleelkellk 98 
                  +++   ++v nKiD+ +++ ++ee ++  ++  +  + +sakt+eg+++  e++ 
   KOO23824.1 116 TQHFVKLLVGNKIDVKDRQVTVEEAETFARRQAMMYIETSAKTREGIRQAFEEVV 170
                  4455567888***********************************9987665554 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.5   0.0   1.7e-06     0.002      27     107 ..      15     131 ..      14     182 .. 0.59
   2 ?   -1.0   0.0       1.7     2e+03      58      88 ..     156     176 ..     135     197 .. 0.54

  Alignments for each domain:
  == domain 1  score: 18.5 bits;  conditional E-value: 1.7e-06
      AAA_16  27 vllsGesGvGKsslvrellr.alekd...........ggiflrgkcdqlesaipysalaqalareellrqllde.................aesaelea 96 
                 vll+G++GvGKss++ ++ + ++e++           + ++l gk+++l       ++++++ + e +r l +                  ++ + l++
  KOO23824.1  15 VLLIGDAGVGKSSILLRFTDdSFEEQmastigvdfrvKTVTLGGKTVKL-------TIWDTAGQ-ERFRTLTSSyyrgchgvilvydvnerESFTHLQQ 105
                 89*************7766526666688888777765555577777777.......44444433.4444444444444444444433333377777777 PP

      AAA_16  97 wrekleeala...............a 107
                 w e+le   +                
  KOO23824.1 106 WLEELELYSTtqhfvkllvgnkidvK 131
                 77776665556666666666666662 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 1.7
      AAA_16  58 gkcdqlesaipysalaqalareellrqllde 88 
                 +k+++         + qa+ + e+++++ld 
  KOO23824.1 156 AKTRE--------GIRQAF-E-EVVQKILDS 176
                 22222........255555.3.555555544 PP

>> SRPRB  Signal recognition particle receptor beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.0   3.2e-06    0.0038       5      84 ..      14      93 ..      11     131 .. 0.81
   2 ?   -0.2   0.1      0.47   5.6e+02     126     146 ..     155     175 ..     152     182 .. 0.87

  Alignments for each domain:
  == domain 1  score: 16.7 bits;  conditional E-value: 3.2e-06
                EEEEE-STTSSHHHHHHHHHHSS---B---S.S-EEETTG.....GGTT-SEEEETT-GCCSHHHHHHHHHHGGEEEEEEEEE CS
       SRPRB  5 avllvGlsdsGKTslftrLttdsvkktvtSq.essaalkv..ksekgskltliDfPGheklrqklleklkaksslkglvfvvD 84
                +vll+G    GK s++ r t ds+++ ++S     +  k+   + k  klt+ D  G+e++r+  +    + +  +g++ v D
  KOO23824.1 14 KVLLIGDAGVGKSSILLRFTDDSFEEQMASTiGVDFRVKTvtLGGKTVKLTIWDTAGQERFRTLTSS---YYRGCHGVILVYD 93
                69**********************99999986555555553468899999************85444...3556666666655 PP

  == domain 2  score: -0.2 bits;  conditional E-value: 0.47
                 T---HHHHHHHHHHHHHHHHH CS
       SRPRB 126 lakspklikdaLEkElnkiie 146
                  ak+ + i++a E+ ++ki  
  KOO23824.1 155 SAKTREGIRQAFEEVVQKILD 175
                 599999********9999976 PP

>> AAA_7  P-loop containing dynein motor region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0   5.2e-05     0.062      35      73 ..      14      53 ..       8      59 .. 0.78
   2 ?   -0.8   0.0       0.8   9.5e+02     121     144 ..      98     121 ..      91     128 .. 0.77

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 5.2e-05
       AAA_7 35 pvllvGptGtGKtviikd.llkkldkekylsltinfsaqt 73
                +vll+G++G+GK++i+ + + ++++++  +++ + f  +t
  KOO23824.1 14 KVLLIGDAGVGKSSILLRfTDDSFEEQMASTIGVDFRVKT 53
                79****************5555666666666677776655 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 0.8
       AAA_7 121 ppiellRqlldyggwYdrkklefk 144
                 + ++ l+q+l++  +Y++++  +k
  KOO23824.1  98 ESFTHLQQWLEELELYSTTQHFVK 121
                 566789999999999999875555 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.1   6.5e-05     0.078       9      88 ..      16     109 ..      15     148 .. 0.63
   2 ?   -0.3   0.0      0.97   1.2e+03      28      64 ..     133     170 ..     127     184 .. 0.57

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 6.5e-05
      AAA_22   9 vvtGesGtGKTtllrrlleqldeeakaee....erpevvfvtlpsst........sskdllrellralglelka....erlsseellealeqalra 88 
                 +++G +G+GK+  l r+++   ee+ a +       +v +vtl ++t          ++ +r l + + +++++    +  +++e +++l+q l++
  KOO23824.1  16 LLIGDAGVGKSSILLRFTDDSFEEQMASTigvdF--RVKTVTLGGKTvkltiwdtAGQERFRTLTSSYYRGCHGvilvYDVNERESFTHLQQWLEE 109
                 79***************99876665555578442..333444444442111111123333355555555555557777555555555666555554 PP

  == domain 2  score: -0.3 bits;  conditional E-value: 0.97
      AAA_22  28 qldeeakaee.erpevvfvtlpsstsskdllrellral 64 
                 + + +++ae+ +r++ + +  +s ++++ +++++ + +
  KOO23824.1 133 RQVTVEEAETfARRQAMMYIETSAKTREGIRQAFEEVV 170
                 45556666666555555444444444555555554443 PP

>> Gp-FAR-1  Nematode fatty acid retinoid binding protein (Gp-FAR-1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   0.2   3.3e-05     0.039      72     135 ..     113     171 ..      98     181 .. 0.80

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 3.3e-05
    Gp-FAR-1  72 speakeFvkkliakgrkleaqvlagekpdlselkkvaktifnkykslseeakaelekaFpeivk 135
                   ++++Fvk l+++   ++     + +++ +e  ++a+ ++++y + s+++++ +++aF e+v+
  KOO23824.1 113 YSTTQHFVKLLVGNKIDVK-----DRQVTVEEAETFARRQAMMYIETSAKTREGIRQAFEEVVQ 171
                 5677888888776655555.....5577777888***************************997 PP

>> FeoB_N  Ferrous iron transport protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   0.2   0.00038      0.45       2      64 ..      14      78 ..      13     169 .. 0.59

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.00038
                EEEEEESTTSSHHHHHHHHHTTS..EEEEESTTSSSEEEEEEEEETTEEEEEEE----SSSSSSS CS
      FeoB_N  2 tvalvGnpnvGkttlfnaltgak..qkvgNwpGvtvekkegklklkgkeveivDlPGiYslsays 64
                +v l+G+  vGk++++ + t+ +  ++++   Gv    k+++l  k+ +++i D  G   + + +
  KOO23824.1 14 KVLLIGDAGVGKSSILLRFTDDSfeEQMASTIGVDFRVKTVTLGGKTVKLTIWDTAGQERFRTLT 78
                789*****************865338899999999999999999888999999998876554443 PP

>> ABM  Antibiotic biosynthesis monooxygenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.7   0.1     0.013        16      22      57 ..      74     106 ..      68     120 .. 0.83
   2 ?    4.8   0.0     0.025        30       2      27 ..     150     175 ..     149     185 .. 0.82

  Alignments for each domain:
  == domain 1  score: 5.7 bits;  conditional E-value: 0.013
                 HHHHHHHHHHTSTTEEEEEEEEEETSTTEEEEEEEE CS
         ABM  22 faeavesllaeepGclgyellrstedpdevvvieeW 57 
                 f+ + +   +   Gc+g+ l+ + +++++++ + +W
  KOO23824.1  74 FRTLTS---SYYRGCHGVILVYDVNERESFTHLQQW 106
                 555555...3468*********************** PP

  == domain 2  score: 4.8 bits;  conditional E-value: 0.025
                 EEEEEEEEESTTGHHHHHHHHHHHHH CS
         ABM   2 viviaeirvkpgqaeafldafaeave 27 
                  ++    ++++g ++af++++++++ 
  KOO23824.1 150 MYIETSAKTREGIRQAFEEVVQKILD 175
                 556667789*************9987 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   0.00026      0.31      25      39 ..      15      29 ..       8      30 .. 0.90

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00026
      AAA_29 25 tlltGpsGsGKSTll 39
                +ll+G+ G+GKS++l
  KOO23824.1 15 VLLIGDAGVGKSSIL 29
                79***********97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (212 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       995  (0.0554967); expected 358.6 (0.02)
Passed bias filter:                      828  (0.0461822); expected 358.6 (0.02)
Passed Vit filter:                        84  (0.00468515); expected 17.9 (0.001)
Passed Fwd filter:                        15  (0.000836633); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              15  [number of targets reported over threshold]
# CPU time: 0.50u 0.27s 00:00:00.77 Elapsed: 00:00:00.41
# Mc/sec: 1568.38
//
Query:       KOO23825.1  [L=155]
Description: hypothetical protein Ctob_003950 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (155 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       510  (0.0284455); expected 358.6 (0.02)
Passed bias filter:                      298  (0.0166211); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.40u 0.25s 00:00:00.65 Elapsed: 00:00:00.42
# Mc/sec: 1095.96
//
Query:       KOO23826.1  [L=517]
Description: hypothetical protein Ctob_003947 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (517 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       580  (0.0323498); expected 358.6 (0.02)
Passed bias filter:                      433  (0.0241508); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.52u 0.25s 00:00:00.77 Elapsed: 00:00:00.41
# Mc/sec: 3826.20
//
Query:       KOO23827.1  [L=293]
Description: hypothetical protein Ctob_003944 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.012   15.1   0.0      0.023   14.2   0.0    1.4  1  EF-hand_5  EF hand
       0.02   14.4   0.0      0.037   13.6   0.0    1.4  1  EF-hand_1  EF hand
      0.039   13.9   0.0      0.087   12.8   0.0    1.5  1  EF-hand_6  EF-hand domain


Domain annotation for each model (and alignments):
>> EF-hand_5  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   0.0   3.8e-06     0.023       8      22 ..       4      18 ..       3      21 .. 0.92

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 3.8e-06
                H-SS-SSCE-HHHHH CS
   EF-hand_5  8 iDlNgDGkIskeELk 22
                +D++gDGk+ ++E++
  KOO23827.1  4 LDTDGDGKLGPDEWQ 18
                6*************8 PP

>> EF-hand_1  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.0   6.3e-06     0.037       9      27 ..       4      22 ..       4      24 .. 0.89

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 6.3e-06
                HTTTSSSEEEHHHHHHHHH CS
   EF-hand_1  9 fDkDgdGkIdfeEfkellk 27
                +D+DgdGk+  +E++ +++
  KOO23827.1  4 LDTDGDGKLGPDEWQLAVE 22
                5*************99876 PP

>> EF-hand_6  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0   1.5e-05     0.087       9      30 ..       4      24 ..       2      25 .. 0.87

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 1.5e-05
   EF-hand_6  9 fDkdgdGkidaeElrkalrkal 30
                +D+dgdGk+ ++E++ a   +l
  KOO23827.1  4 LDTDGDGKLGPDEWQLAVE-LL 24
                8**************9987.66 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (293 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       357  (0.0199119); expected 358.6 (0.02)
Passed bias filter:                      236  (0.013163); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.41u 0.27s 00:00:00.68 Elapsed: 00:00:00.42
# Mc/sec: 2088.90
//
Query:       KOO23828.1  [L=428]
Description: hypothetical protein Ctob_003945 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    0.00059   20.3   0.0        1.1    9.6   0.0    2.5  3  Sulfotransfer_3  Sulfotransferase family
     0.0017   17.9   0.0      0.046   13.2   0.0    2.4  2  Sulfotransfer_1  Sulfotransferase domain


Domain annotation for each model (and alignments):
>> Sulfotransfer_3  Sulfotransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.1   0.0   0.00035       3.2       2      22 ..      20      43 ..      18     123 .. 0.76
   2 !    9.6   0.0   0.00012       1.1     126     155 ..     248     274 ..     239     299 .. 0.77
   3 ?   -2.7   0.0       0.7   6.3e+03     180     214 ..     363     400 ..     321     402 .. 0.61

  Alignments for each domain:
  == domain 1  score: 8.1 bits;  conditional E-value: 0.00035
                     EEEE--TTSSHHHHHHHHHT...S CS
  Sulfotransfer_3  2 ifivGlpRSGTTlLhrlLaa...h 22
                     + i+G p+SG+T+L   L a   +
       KOO23828.1 20 LHILGNPKSGSTFLFSCLRAgpfD 43
                     679***********9999985551 PP

  == domain 2  score: 9.6 bits;  conditional E-value: 0.00012
                      EEEEEEE--H.HHHHHHHHHTT-------- CS
  Sulfotransfer_3 126 AkfihlvRdpvdtvlssyvslfgkkresys 155
                       +fi+l+Rdp+ ++ ss +++ ++k   + 
       KOO23828.1 248 LRFIILLRDPASRAQSSARMMREWK---WD 274
                      69********999999999995543...33 PP

  == domain 3  score: -2.7 bits;  conditional E-value: 0.7
                      HHH..S-TTSEEEEEHHHHHH-HHHH.HHHHHHHHT-- CS
  Sulfotransfer_3 180 rar..lppdrfldvrYedLvadpegt.lrriyeflglp 214
                      + +  + p++fl +  e++ a p  + lr i +f glp
       KOO23828.1 363 WLSagFSPAQFLWMETEAMRALPATElLRTIASFAGLP 400
                      33345667777777777777776655246677777776 PP

>> Sulfotransfer_1  Sulfotransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.7   0.0     0.016   1.4e+02       5      22 ..      21      38 ..      18      59 .. 0.82
   2 !   13.2   0.0   5.1e-06     0.046     103     198 ..     246     401 ..     224     414 .. 0.74

  Alignments for each domain:
  == domain 1  score: 1.7 bits;  conditional E-value: 0.016
                     EEEESTTSSHHHHHHHHH CS
  Sulfotransfer_1  5 livtypKSGTtwlqells 22
                      i++ pKSG+t+l   l+
       KOO23828.1 21 HILGNPKSGSTFLFSCLR 38
                     6999********977666 PP

  == domain 2  score: 13.2 bits;  conditional E-value: 5.1e-06
                      TT-EEEEEE--HHHHHHHHHHHHHHBT.....................................................TSTTT-S-HHHHHH CS
  Sulfotransfer_1 103 snlKiiylvRnpkdvavSryhfsrslk.....................................................klkepetpfeeffd 143
                       +l+ i+l+R+p+ +a S     r++k                                                     +             
       KOO23828.1 246 EQLRFIILLRDPASRAQSSARMMREWKwdksanlsdallsdlarlrgcseqiapssraavvldgasgmegaaspfqraasE------------- 326
                      6789999***********999999999888888888877777777777776666666666666654444444333333331............. PP

                      HHHT.....................THSTTC-HHHHHHHHHH.HTTTTTEEEEEHHHHHHHHHHHH.HHHHHHTT--. CS
  Sulfotransfer_1 144 lfle.....................grvvcgsyfdhvkswlk.lrkkgnvlflrYEdlkkdpakei.kkiaeFlGipl 198
                                               ++v  + y+  v+swl+  + + ++l +  E +++ pa e+ + ia+F G+p 
       KOO23828.1 327 ---LprlsdrslrrfrdclavghplNHVRSSVYAAAVLSWLSaGFSPAQFLWMETEAMRALPATELlRTIASFAGLPT 401
                      ...03333333335555555677778999999**********99*******************9972679*******2 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (428 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       347  (0.0193541); expected 358.6 (0.02)
Passed bias filter:                      280  (0.0156172); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.46u 0.23s 00:00:00.69 Elapsed: 00:00:00.39
# Mc/sec: 3310.36
//
Query:       KOO23829.1  [L=636]
Description: hypothetical protein Ctob_003942 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0046   17.3   1.9        2.2    8.6   0.7    4.1  2  DUF2935    Domain of unknown function (DUF2935)
  ------ inclusion threshold ------
        5.2    7.0  13.1       0.61   10.0   4.2    2.8  2  GIT_CC     GIT coiled-coil Rho guanine nucleotide exchange fa


Domain annotation for each model (and alignments):
>> DUF2935  Domain of unknown function (DUF2935)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.6   0.7   0.00025       2.2      14      93 ..     182     334 ..     179     349 .. 0.79
   2 !    3.7   0.0    0.0085        76      58      92 ..     486     572 ..     337     584 .. 0.62

  Alignments for each domain:
  == domain 1  score: 8.6 bits;  conditional E-value: 0.00025
     DUF2935  14 mkeHalfi...ealldpkekdlikeakefkkeFekllaeavelseglv................................................... 58 
                 +k Ha  +    ++ld + +++++ea + + + e l++e +++ e  v                                                   
  KOO23829.1 182 AKAHAAALhrrDEALDSERERCAQEAVRARTQAEGLEHELNKAREKAVadaealseavtasrqatvqmresareaqaafnktlsvrlqmedaimkaasa 280
                 567888887777888999999999999999999999999999888888888888888888888888888888888888888888888888888888888 PP

     DUF2935  59 ...................rasseleeavakLneealkltreliqFkkellekv 93 
                                    r++  ++++v+++ ++a +  +++i+  ++l+++ 
  KOO23829.1 281 qavedalraelaeqsqtieRIRMADTPRVKDMEQRARQSHMGMIDARNKLEQQE 334
                 888888888888888888888888888888888888888888888877777765 PP

  == domain 2  score: 3.7 bits;  conditional E-value: 0.0085
     DUF2935  58 v....................................................rasseleeavakLneealkltreliqFkkellek 92 
                                                                       a++   ++ ++L+++   ++ el+++ k++ + 
  KOO23829.1 486 AiekqlrdelkdtalrlarsqtenvrlqqenallkqkangaldfaqdaermqrEAEERRRQETSRLTTDLQVVLLELRTYEKQTVDA 572
                 033333333334444444444444444444445566666666666666666656666667777777777777777777777776665 PP

>> GIT_CC  GIT coiled-coil Rho guanine nucleotide exchange factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   4.2   6.8e-05      0.61      22      64 ..     327     369 ..     323     371 .. 0.93
   2 ?    1.2   1.6     0.037   3.4e+02      46      65 ..     502     521 ..     466     522 .. 0.71

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 6.8e-05
      GIT_CC  22 KkalaaseakiqqLlkvNtslsdelrlLQskvqkLqaeNaqlr 64 
                  ++l   e k+++L ++N++l  +l +  + +q L  eNa+++
  KOO23829.1 327 RNKLEQQEGKLKALEAANAQLAAQLDESKQALQDLRDENANVE 369
                 6899999*********************************985 PP

  == domain 2  score: 1.2 bits;  conditional E-value: 0.037
      GIT_CC  46 lrlLQskvqkLqaeNaqlrd 65 
                 l++ Q +  +Lq+eNa l++
  KOO23829.1 502 LARSQTENVRLQQENALLKQ 521
                 44558888899999998876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (636 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2350  (0.131073); expected 358.6 (0.02)
Passed bias filter:                      505  (0.0281667); expected 358.6 (0.02)
Passed Vit filter:                        90  (0.0050198); expected 17.9 (0.001)
Passed Fwd filter:                        35  (0.00195214); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 1.15u 0.28s 00:00:01.43 Elapsed: 00:00:00.49
# Mc/sec: 3929.57
//
Query:       KOO23830.1  [L=430]
Description: hypothetical protein Ctob_003943 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (430 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       378  (0.0210832); expected 358.6 (0.02)
Passed bias filter:                      349  (0.0194657); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.45u 0.25s 00:00:00.70 Elapsed: 00:00:00.40
# Mc/sec: 3192.95
//
Query:       KOO23831.1  [L=560]
Description: NHL repeat containing protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.1e-27   93.7   0.1    7.4e-07   28.9   0.0    5.6  5  NHL           NHL repeat
      1e-09   38.5   0.0       0.63   10.3   0.0    5.6  5  Arylesterase  Arylesterase
    4.3e-05   23.2   0.0        2.4    7.7   0.0    4.0  5  SGL           SMP-30/Gluconolactonase/LRE-like region
  ------ inclusion threshold ------
      0.045   13.0   0.0        4.2    6.5   0.0    2.8  3  Lactonase     Lactonase, 7-bladed beta-propeller
       0.11   13.0   0.1         44    4.7   0.0    3.9  4  Ldl_recept_b  Low-density lipoprotein receptor repeat class B


Domain annotation for each model (and alignments):
>> NHL  NHL repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.3   0.0   1.3e-09   4.8e-06       1      26 [.      58      84 ..      58      85 .. 0.97
   2 !    9.4   0.0   0.00031       1.1       1      23 [.     117     140 ..     117     144 .. 0.92
   3 !   13.2   0.0     2e-05     0.071       1      27 [.     174     201 ..     174     202 .. 0.96
   4 !    8.7   0.0   0.00053       1.9       3      20 ..     232     250 ..     230     253 .. 0.88
   5 !   28.9   0.0   2.1e-10   7.4e-07       1      26 [.     456     482 ..     456     482 .. 0.97

  Alignments for each domain:
  == domain 1  score: 26.3 bits;  conditional E-value: 1.3e-09
                BSSEEEEEEE.TTTEEEEEECCCTEEE CS
         NHL  1 fnyPhGvavd.snGdiyVaDsenhrvq 26
                fn+P G+a+d +  ++y+aD++nhr++
  KOO23831.1 58 FNRPDGLAIDeQAQELYIADRGNHRIR 84
                9************************97 PP

  == domain 2  score: 9.4 bits;  conditional E-value: 0.00031
                 BSSEEEEEEE.TTTEEEEEECCCT CS
         NHL   1 fnyPhGvavd.snGdiyVaDsenh 23 
                 f +P G+avd  +  ++VaDs n+
  KOO23831.1 117 FDEPIGLAVDgYTRLLFVADSANM 140
                 889*****************9996 PP

  == domain 3  score: 13.2 bits;  conditional E-value: 2e-05
                 BSSEEEEEEE.TTTEEEEEECCCTEEEE CS
         NHL   1 fnyPhGvavd.snGdiyVaDsenhrvqv 27 
                 f++P+G+a+   + +++V+D +nh v+v
  KOO23831.1 174 FSRPAGLALAlHSRQLFVCDPYNHAVRV 201
                 89***********************997 PP

  == domain 4  score: 8.7 bits;  conditional E-value: 0.00053
                 SEEEEEEE.TTTEEEEEEC CS
         NHL   3 yPhGvavd.snGdiyVaDs 20 
                  Ph vavd +   +yVa++
  KOO23831.1 232 LPHAVAVDaDERTVYVAER 250
                 6****************85 PP

  == domain 5  score: 28.9 bits;  conditional E-value: 2.1e-10
                 BSSEEEEEEE.TTTEEEEEECCCTEEE CS
         NHL   1 fnyPhGvavd.snGdiyVaDsenhrvq 26 
                 f++P+G+a+d s+  +yVaDs+nhrv+
  KOO23831.1 456 FYRPRGLALDpSTQLLYVADSYNHRVR 482
                 89***********************96 PP

>> Arylesterase  Arylesterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.4   0.0    0.0058        21      51      80 ..      56      85 ..      50      89 .. 0.85
   2 ?    4.4   0.0     0.012        43      51      75 ..     115     139 ..     101     148 .. 0.89
   3 ?    3.2   0.0     0.028     1e+02      50      83 ..     171     204 ..     166     207 .. 0.88
   4 !    7.1   0.0    0.0017       6.1      49      72 ..     226     249 ..     219     253 .. 0.89
   5 !   10.3   0.0   0.00018      0.63      49      78 ..     452     481 ..     448     488 .. 0.89

  Alignments for each domain:
  == domain 1  score: 5.4 bits;  conditional E-value: 0.0058
  Arylesterase 51 sglssanGInidadkkyiyvadilresihv 80
                  + ++ + G+ id + + +y+ad  ++ i +
    KOO23831.1 56 ALFNRPDGLAIDEQAQELYIADRGNHRIRR 85
                  56889*****************99998865 PP

  == domain 2  score: 4.4 bits;  conditional E-value: 0.012
  Arylesterase  51 sglssanGInidadkkyiyvadilr 75 
                   ++++ + G+ +d   + ++vad+ +
    KOO23831.1 115 ARFDEPIGLAVDGYTRLLFVADSAN 139
                   6899******************876 PP

  == domain 3  score: 3.2 bits;  conditional E-value: 0.028
  Arylesterase  50 asglssanGInidadkkyiyvadilresihvmkk 83 
                   a+ +s + G+ +  + + ++v d  ++ + v+++
    KOO23831.1 171 AAAFSRPAGLALALHSRQLFVCDPYNHAVRVVNV 204
                   7899*******************99999987765 PP

  == domain 4  score: 7.1 bits;  conditional E-value: 0.0017
  Arylesterase  49 vasglssanGInidadkkyiyvad 72 
                    +++++ +  + +dad++ +yva+
    KOO23831.1 226 EIASFELPHAVAVDADERTVYVAE 249
                   6889******************97 PP

  == domain 5  score: 10.3 bits;  conditional E-value: 0.00018
  Arylesterase  49 vasglssanGInidadkkyiyvadilresi 78 
                   v  +++ + G+ +d+  + +yvad+ ++ +
    KOO23831.1 452 VNTRFYRPRGLALDPSTQLLYVADSYNHRV 481
                   6689*********************99987 PP

>> SGL  SMP-30/Gluconolactonase/LRE-like region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.2   0.0    0.0019       6.7     183     210 ..      55      86 ..      44      89 .. 0.81
   2 !    7.7   0.0   0.00066       2.4       3      78 ..      62     158 ..      61     168 .. 0.72
   3 ?    2.6   0.0     0.023        84       7      73 ..     125     210 ..     120     223 .. 0.55
   4 ?    0.3   0.0      0.12   4.4e+02     133     155 ..     230     253 ..     224     284 .. 0.75
   5 !    6.8   0.0    0.0012       4.4     131     164 ..     454     487 ..     441     500 .. 0.87

  Alignments for each domain:
  == domain 1  score: 6.2 bits;  conditional E-value: 0.0019
         SGL 183 e...gepDGlavDa.eGnvwvAvwgggkvvrf 210
                 +   ++pDGla+D+   ++++A  g+++++r+
  KOO23831.1  55 NalfNRPDGLAIDEqAQELYIADRGNHRIRRV 86 
                 344567*******98999****9999999986 PP

  == domain 2  score: 7.7 bits;  conditional E-value: 0.00066
         SGL   3 EGpvwdeeegaLlwvDilgqrihrldpatgketv...................ldtpesvGaiaprkdgrlvvasksglall...dlasgeletlade 78 
                  G   de+ ++L+  D  + ri r++    + +                    ++++e++G++++    rl++ + s  +++   dl++ +++tla +
  KOO23831.1  62 DGLAIDEQAQELYIADRGNHRIRRVRIGHPDASDyvttfvgwyqgfadgfgtnARFDEPIGLAVD-GYTRLLFVADSANMVIrqvDLNTARVTTLAGS 158
                 67888999999999999999999986433332224468899999999998888888889999999.44555555555544444688999999998865 PP

  == domain 3  score: 2.6 bits;  conditional E-value: 0.023
         SGL   7 wdeeegaLlwvDilgqrihrldpatgketv.................ldtpesvGaiaprkdgrlvvasksglall..dlasgele 73 
                 +d  ++ L+  D  +  i ++d++t++ t+                 + ++ ++G++    + +l v+  ++ a+   ++ ++e++
  KOO23831.1 125 VDGYTRLLFVADSANMVIRQVDLNTARVTTlagspgvqgfvngrggaAAFSRPAGLALALHSRQLFVCDPYNHAVRvvNVVTREVR 210
                 55555566666888888888888888888755555555444444444444444444444344444444433332222245555555 PP

  == domain 4  score: 0.3 bits;  conditional E-value: 0.12
         SGL 133 ltipNGlawspdgktlYlaD.slt 155
                 +  p ++a+++d++t+Y+a+ s++
  KOO23831.1 230 FELPHAVAVDADERTVYVAErSPR 253
                 567788999999****99762444 PP

  == domain 5  score: 6.8 bits;  conditional E-value: 0.0012
         SGL 131 ddltipNGlawspdgktlYlaDsltrkiwaydvd 164
                 +++  p Gla++p ++ lY+aDs ++++  +d+ 
  KOO23831.1 454 TRFYRPRGLALDPSTQLLYVADSYNHRVRLIDLT 487
                 5667789********************9988875 PP

>> Lactonase  Lactonase, 7-bladed beta-propeller
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   0.0      0.17   6.1e+02      34      66 ..      56      86 ..      40     157 .. 0.64
   2 ?    2.5   0.0      0.02        72      24      70 ..     218     263 ..     203     281 .. 0.65
   3 ?    6.5   0.0    0.0012       4.2     285     318 ..     451     484 ..     437     489 .. 0.84

  Alignments for each domain:
  == domain 1  score: -0.6 bits;  conditional E-value: 0.17
                EESS---SEEE-TTSSEEEEEET.STTTEEEEE CS
   Lactonase 34 aelenPsyLalspdgktlYavnetgeeggvsaf 66
                a  + P  La++++++ lY +++   + ++  +
  KOO23831.1 56 ALFNRPDGLAIDEQAQELYIADRG--NHRIRRV 86
                455556666666666666666653..2233222 PP

  == domain 2  score: 2.5 bits;  conditional E-value: 0.02
                 TS-EEEEEEEEESS---SEEE-TTSSEEEEEET.STTTEEEEEEEET CS
   Lactonase  24 tgkltplelvaelenPsyLalspdgktlYavnetgeeggvsafaidk 70 
                 +g+ +  +++a  e P  +a+++d++t+Y+++++ ++ ++   a+++
  KOO23831.1 218 QGSADGRGEIASFELPHAVAVDADERTVYVAERS-PRVRAIETAYEP 263
                 5555666667777778888888888888888776.444444444444 PP

  == domain 3  score: 6.5 bits;  conditional E-value: 0.0012
                 EEE-SSS.--EEEE-TTSSEEEEEETTTTEEEEE CS
   Lactonase 285 evstegkfPRdfaldpsgklllvanqksdnvtvf 318
                 +v+t+   PR +aldps +ll+va+   ++v ++
  KOO23831.1 451 NVNTRFYRPRGLALDPSTQLLYVADSYNHRVRLI 484
                 55666677*****************999999876 PP

>> Ldl_recept_b  Low-density lipoprotein receptor repeat class B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.1   0.0     0.039   1.4e+02      32      42 .]      58      68 ..      40      68 .. 0.82
   2 ?   -1.3   0.0      0.88   3.2e+03      32      41 ..     117     126 ..     109     126 .. 0.86
   3 ?   -3.2   0.0       3.5   1.3e+04      32      40 ..     174     182 ..     169     182 .. 0.86
   4 ?    4.7   0.0     0.012        44      31      42 .]     453     466 ..     447     466 .. 0.82

  Alignments for each domain:
  == domain 1  score: 3.1 bits;  conditional E-value: 0.039
                  -S-EEEEEEET CS
  Ldl_recept_b 32 lqnPrgiAvDp 42
                  ++ P+g+A+D+
    KOO23831.1 58 FNRPDGLAIDE 68
                  899******95 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 0.88
                   -S-EEEEEEE CS
  Ldl_recept_b  32 lqnPrgiAvD 41 
                   ++ P g+AvD
    KOO23831.1 117 FDEPIGLAVD 126
                   899******9 PP

  == domain 3  score: -3.2 bits;  conditional E-value: 3.5
                   -S-EEEEEE CS
  Ldl_recept_b  32 lqnPrgiAv 40 
                   ++ P+g+A+
    KOO23831.1 174 FSRPAGLAL 182
                   789****97 PP

  == domain 4  score: 4.7 bits;  conditional E-value: 0.012
                   S..-S-EEEEEEET CS
  Ldl_recept_b  31 d..lqnPrgiAvDp 42 
                   +  ++ Prg+A+Dp
    KOO23831.1 453 NtrFYRPRGLALDP 466
                   455899*******8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (560 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       356  (0.0198561); expected 358.6 (0.02)
Passed bias filter:                      276  (0.0153941); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.52u 0.23s 00:00:00.75 Elapsed: 00:00:00.39
# Mc/sec: 4321.46
//
Query:       KOO23832.1  [L=118]
Description: protochlorophyllide reductase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (118 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       384  (0.0214178); expected 358.6 (0.02)
Passed bias filter:                      305  (0.0170115); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.24s 00:00:00.59 Elapsed: 00:00:00.38
# Mc/sec: 925.44
//
Query:       KOO23833.1  [L=204]
Description: baculoviral iap repeat-containing protein 6 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.7e-25   87.6   0.0    8.1e-25   87.1   0.0    1.2  1  UQ_con    Ubiquitin-conjugating enzyme
     0.0047   16.8   0.0      0.071   13.0   0.0    2.5  2  UEV       UEV domain
  ------ inclusion threshold ------
      0.031   14.6   0.0      0.055   13.8   0.0    1.4  1  RWD       RWD domain


Domain annotation for each model (and alignments):
>> UQ_con  Ubiquitin-conjugating enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   87.1   0.0   1.4e-28   8.1e-25      25     137 ..       4     132 ..       1     135 [. 0.91

  Alignments for each domain:
  == domain 1  score: 87.1 bits;  conditional E-value: 1.4e-28
                 TEECEEEEEEEB.TTSTTTTEEEEEEEE--TTTTTS--EEEESS.....T-SCTTBETTSBB-CGGGSTTT......--T.TSHHHHHHHHHHHHH..H CS
      UQ_con  25 enlfewkvlikgpedtpYeggvFklelefpedYPlkpPkvkfvt.....kifHPnvdksGevcldiLkeek......Wsp.altlesvllsiqsLl..a 109
                 e+++ w+++i+gpe+tpY  g+F +++  p +YP+ +Pkv+++t       f+Pn+++ G+vcl++L +++      W p ++tl +vl+siq+L+   
  KOO23833.1   4 EQIQLWRAMITGPEGTPYSSGCFVFDILAPAEYPNVAPKVNLQTtgggsVRFNPNLYNCGKVCLSLLGTWQgddgesWHPkTSTLLQVLMSIQALIlvP 102
                 5899***************************************9999999******************888888888***999***********99666 PP

                 S-.-TTS-SSHHHHHHHHHT.HHHHHHHHH CS
      UQ_con 110 ep.npesplnkeaakllkkd.reeykkkvk 137
                 +p  +e ++++++++   +  +++y+++++
  KOO23833.1 103 DPfFNEPGFERNRGTPEGDRqSRQYNETIR 132
                 777789999999999888777889999886 PP

>> UEV  UEV domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.0   0.0   1.2e-05     0.071      56     101 ..      32      77 ..      25     105 .. 0.78
   2 ?    0.2   0.0      0.11   6.4e+02      92     120 ..     168     203 ..     160     204 .] 0.78

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 1.2e-05
                 --TTTTTS--EEEE-GCC--TSGGGGGB-TTSBB--HHHHS--TTT CS
         UEV  56 vlesyPveaPivyvkptksmvikknenvdaqGlvylpyLeeWkrek 101
                  + +yP+ aP v ++ t   +++ n n+ + G+v l +L  W+   
  KOO23833.1  32 APAEYPNVAPKVNLQTTGGGSVRFNPNLYNCGKVCLSLLGTWQGDD 77 
                 6899***********************************9998732 PP

  == domain 2  score: 0.2 bits;  conditional E-value: 0.11
                 HHHHS--TTT--.......HHHHHHHHHH-----XX CS
         UEV  92 pyLeeWkreksn.......lvslvqelaqafeeesP 120
                 + ++ W  ek n       +  lv+el +a  ++ P
  KOO23833.1 168 EQVRGWAAEKENsprhaeaMKGLVKELEAALDKHVP 203
                 5567787766666677777999*****999999887 PP

>> RWD  RWD domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.0   9.2e-06     0.055      55     102 ..      26      79 ..      18      90 .. 0.85

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 9.2e-06
                 EEEEEEE-SSTTSS--EEEEEECC......SS-HHHHHHHHHHHHHHHHHTTTS CS
                 xxxxxxxxxxxxxxxxxxxxxxxx......xxxxxxxxxxxxxxxxxxxxxxxx RF
         RWD  55 lkleiklpeeYPeeaPiislsste......nlpkeqvksleekleelaeenlge 102
                 ++++i  p eYP++aP+++l++t       n + + + +++  l  +++ ++ge
  KOO23833.1  26 FVFDILAPAEYPNVAPKVNLQTTGggsvrfNPNLYNCGKVCLSLLGTWQGDDGE 79 
                 7889999****************9998888777888888888888888877776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (204 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       455  (0.0253779); expected 358.6 (0.02)
Passed bias filter:                      431  (0.0240393); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.40u 0.21s 00:00:00.61 Elapsed: 00:00:00.37
# Mc/sec: 1668.62
//
Query:       KOO23834.1  [L=335]
Description: hypothetical protein Ctob_000765 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (335 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       551  (0.0307323); expected 358.6 (0.02)
Passed bias filter:                      484  (0.0269954); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.45u 0.27s 00:00:00.72 Elapsed: 00:00:00.41
# Mc/sec: 2454.46
//
Query:       KOO23835.1  [L=382]
Description: gamma-tocopherol methyltransferase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    9.1e-25   87.2   0.0    1.9e-24   86.1   0.0    1.6  1  Methyltransf_11  Methyltransferase domain
      7e-21   74.7   0.0    1.3e-20   73.9   0.0    1.4  1  Methyltransf_25  Methyltransferase domain
    3.7e-15   56.0   0.0    5.4e-15   55.5   0.0    1.2  1  Methyltransf_31  Methyltransferase domain
    5.5e-15   55.4   0.0    7.4e-15   55.0   0.0    1.1  1  CMAS             Mycolic acid cyclopropane synthetase
    3.3e-13   49.8   0.0    4.6e-13   49.3   0.0    1.2  1  Methyltransf_23  Methyltransferase domain
    1.1e-10   42.1   0.0    1.8e-10   41.4   0.0    1.3  1  Methyltransf_12  Methyltransferase domain
    9.7e-10   38.2   0.0    1.8e-09   37.3   0.0    1.3  1  Ubie_methyltran  ubiE/COQ5 methyltransferase family
  ------ inclusion threshold ------
      0.015   14.6   0.0      0.023   14.0   0.0    1.3  1  Methyltransf_2   O-methyltransferase domain
      0.021   14.4   0.0      0.036   13.6   0.0    1.3  1  MetW             Methionine biosynthesis protein MetW
      0.028   14.1   0.0      0.044   13.5   0.0    1.2  1  PCMT             Protein-L-isoaspartate(D-aspartate) O-methyl
      0.031   13.8   0.0      0.053   13.1   0.0    1.4  1  MTS              Methyltransferase small domain
      0.073   12.2   0.0       0.11   11.6   0.0    1.2  1  DREV             DREV methyltransferase
       0.09   12.1   0.0       0.14   11.5   0.0    1.2  1  NAS              Nicotianamine synthase protein
       0.17   10.4   0.0       0.27    9.7   0.0    1.3  1  Methyltransf_29  Putative S-adenosyl-L-methionine-dependent m
       0.23   10.3   0.0        0.3   10.0   0.0    1.1  1  Methyltransf_9   Protein of unknown function (DUF1698)
       0.26   11.5   0.7       0.49   10.6   0.7    1.4  1  Spore_YtfJ       Sporulation protein YtfJ (Spore_YtfJ)


Domain annotation for each model (and alignments):
>> Methyltransf_11  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   86.1   0.0   1.7e-27   1.9e-24       1      96 []     116     214 ..     116     214 .. 0.98

  Alignments for each domain:
  == domain 1  score: 86.1 bits;  conditional E-value: 1.7e-27
                      EEET-TTSHHHHHHHHTT.SEEEEEES-HHHHHHHHHHCCHHT-..EEEETTEECCCTSS-TT-EEEEEEES-CCC-CCHHHHHHHHHHHEEEE CS
  Methyltransf_11   1 LdvGcGtGrlaealakrg.arvvgvDlskemlklakekaseegl..kvefvvadaeklpfednsfDlvvssevlhhvedpekalkeiaRvLkpg 91 
                      LdvGcG G  ++++a+++ ++ vg+ ls+ + ++a++ ++ +g+  +++f vada ++pf+dnsfDlv+s e+ +h++d +k+++e++Rv+kpg
       KOO23835.1 116 LDVGCGIGGSSRHIARTYgGSGVGITLSPVQAARANALSQAQGFgdRLQFTVADALQMPFPDNSFDLVWSMESGEHMPDKQKFVSELVRVCKPG 209
                      8**************8888*************************************************************************** PP

                      EEEEE CS
  Methyltransf_11  92 Gllvi 96 
                      G++++
       KOO23835.1 210 GRVIV 214
                      **986 PP

>> Methyltransf_25  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   73.9   0.0   1.1e-23   1.3e-20       1      97 []     115     210 ..     115     210 .. 0.96

  Alignments for each domain:
  == domain 1  score: 73.9 bits;  conditional E-value: 1.1e-23
                      EEEET-TTSHHHHHHHCTSTSSEEEEEESSHHHHHHHHHHHHHTTT..TEEEEESBCCGBSSSTTTEEEEEEESTGGGSSHHHHHHHHHHHHHH CS
  Methyltransf_25   1 vLdlGcGtGrltlalakrlgkakvtgvDiseemleaareraeeegl..nvefvqgdaedlpfedgsfDlvvssgalhhlsdedlekalkeiarv 92 
                      vLd+GcG G  ++++a+ +g ++ +g+ +s+ + ++a++  +++g+  +++f ++da ++pf+d+sfDlv+s+ + +h++  d +k+++e+ rv
       KOO23835.1 115 VLDVGCGIGGSSRHIARTYG-GSGVGITLSPVQAARANALSQAQGFgdRLQFTVADALQMPFPDNSFDLVWSMESGEHMP--DKQKFVSELVRV 205
                      9******************8.************************9**************************88899988..667********* PP

                      EEEEE CS
  Methyltransf_25  93 LkpgG 97 
                      +kpgG
       KOO23835.1 206 CKPGG 210
                      ****9 PP

>> Methyltransf_31  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.5   0.0   4.8e-18   5.4e-15       5     115 ..     113     219 ..     111     267 .. 0.89

  Alignments for each domain:
  == domain 1  score: 55.5 bits;  conditional E-value: 4.8e-18
  Methyltransf_31   5 lrvlDlGCGtGeltfelaeelgpkaevvGiDiseeaielArenaqklgld.nveFeqgdieeleklledekfDlilsnevlnaladpdkileei 97 
                      +rvlD+GCG G  +  +a++ + ++  vGi  s+    +A++ +q +g+  +++F ++d+ +++  + d++fDl+ s e   +++d++k+  e+
       KOO23835.1 113 VRVLDVGCGIGGSSRHIART-Y-GGSGVGITLSPVQAARANALSQAQGFGdRLQFTVADALQMP--FPDNSFDLVWSMESGEHMPDKQKFVSEL 202
                      69****************54.4.46679*********************99*************..**************************** PP

  Methyltransf_31  98 ervlkpggilliedprll 115
                       rv kpgg++++   + +
       KOO23835.1 203 VRVCKPGGRVIVVAWC-H 219
                      **********998766.3 PP

>> CMAS  Mycolic acid cyclopropane synthetase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.0   0.0   6.6e-18   7.4e-15       9     166 ..      54     216 ..      48     232 .. 0.87

  Alignments for each domain:
  == domain 1  score: 55.0 bits;  conditional E-value: 6.6e-18
                 HHHHHHTS-HHHHCTTS-TT---S----SS.TT--HHHHHHHHHHHHHTTTT--TT-...EEEEES-TTSHHHHHHHHHH--EEEEEES-HHHHHHHHH CS
        CMAS   9 nikahYDlsndffalfldptmtYsCAyfer.ddmtLeeAqlaKldlileklelkpGm...tlLdiGcGWGslvrraverydvkvvglTlSkeqaklakk 103
                  i++ YD s   ++++ ++ m       e  + ++ ++Aq + +d +l  ++++ G    ++Ld+GcG G+  r+ ++ y+ + vg+TlS  qa++a++
  KOO23835.1  54 GIASFYDASSGVWETVWGEHMHHGYYGLEGgERKDHQQAQVDMVDEALAWAGVDSGVppvRVLDVGCGIGGSSRHIARTYGGSGVGITLSPVQAARANA 152
                 57889999999999999999987644444335566799****************9954449************************************** PP

                 HHHTS-SSS-EEEEES-GGG---...--SEEEEES-GGGTSGGGHHHHHHHHHHHS-TT-EEEEEE CS
        CMAS 104 rvdeldlerkvevklldyedlde...kvdrvvsvgafehvgkenydtffkklkkllkedGllllht 166
                   +++++ ++ + +++d  +++     +d v s++  eh+  +  ++f+++l ++ k++G++++ +
  KOO23835.1 153 LSQAQGFGDRLQFTVADALQMPFpdnSFDLVWSMESGEHMPDK--QKFVSELVRVCKPGGRVIVVA 216
                 *****************9987544469************9877..69**************99865 PP

>> Methyltransf_23  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.3   0.0   4.1e-16   4.6e-13      22     131 ..     111     237 ..      85     272 .. 0.75

  Alignments for each domain:
  == domain 1  score: 49.3 bits;  conditional E-value: 4.1e-16
  Methyltransf_23  22 aggrvLdiGcGtGillevl.rengfsvtgvDlspeaveiae.......kakkaqkdqfdeqeaaepqgkfdlIvlrevlehvpdppellrqiat 107
                      ++ rvLd+GcG G  ++++ r++g s +g+ lsp++ ++a          +  q++ +d+ + ++p+++fdl+ ++e+ eh+pd  + ++ + +
       KOO23835.1 111 PPVRVLDVGCGIGGSSRHIaRTYGGSGVGITLSPVQAARANalsqaqgFGDRLQFTVADALQMPFPDNSFDLVWSMESGEHMPDKQKFVSELVR 204
                      3449*********999999788999*************999666666644445555555558888***************************** PP

  Methyltransf_23 108 llkpgGylllseplasl.........kedrlll 131
                       +kpgG++++  +  ++         +++++ll
       KOO23835.1 205 VCKPGGRVIVVAWCHRDlaagettlrPSEERLL 237
                      **********99976666777766663444433 PP

>> Methyltransf_12  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.4   0.0   1.6e-13   1.8e-10       1      99 []     116     212 ..     116     212 .. 0.90

  Alignments for each domain:
  == domain 1  score: 41.4 bits;  conditional E-value: 1.6e-13
  Methyltransf_12   1 LeiGcGtGsllralleklpdieytgvDispsaiedakeklakrennnnnnvelealdlldldgg.ssfDlvvasnvlhhlkdirevldnirklL 93 
                      L++GcG G  +r++++   + + +g+ +sp +  ++++ l++ +  + +++++++ d+l+ + + +sfDlv++ +  +h++d++++++++ +++
       KOO23835.1 116 LDVGCGIGGSSRHIART-YGGSGVGITLSPVQA-ARANALSQAQ-GFGDRLQFTVADALQMPFPdNSFDLVWSMESGEHMPDKQKFVSELVRVC 206
                      8*************999.8888999*****999.5555555555.58899999999999888879***************************** PP

  Methyltransf_12  94 kpgGrl 99 
                      kpgGr+
       KOO23835.1 207 KPGGRV 212
                      ****85 PP

>> Ubie_methyltran  ubiE/COQ5 methyltransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.3   0.0   1.6e-12   1.8e-09      45     156 ..     109     219 ..     102     229 .. 0.85

  Alignments for each domain:
  == domain 1  score: 37.3 bits;  conditional E-value: 1.6e-12
                      S--TTEEEEES-TT-HHHHHHHHHHHHHHEEEEEES-HHHHHHHHHHHHHHTSS.TEEEEE--TTT-TTS-T-EEEEEEES-GGG-S-HHHHHH CS
  Ubie_methyltran  45 vkrgakvlDvagGtgDlafklsdsvgekgkvvvlDinenmLkvgekklkeegki.nieflqanaeeLpfeddsfDvvtvsfGlrnvtDklkaLk 137
                      + ++ +vlDv +G g  + +++++ g +g  v++ +++     +++  + +g+  +++f +a+a ++pf d+sfD+v        ++Dk+k + 
       KOO23835.1 109 GVPPVRVLDVGCGIGGSSRHIARTYGGSG--VGITLSPVQAARANALSQAQGFGdRLQFTVADALQMPFPDNSFDLVWSMESGEHMPDKQKFVS 200
                      556789***************99999888..5667777777777777788888789*******************9976666689********* PP

                      HHHHHEEEEEEEEEEEE-- CS
  Ubie_methyltran 138 eayrvlkpGGrlvvlefsk 156
                      e+ rv kpGGr++v+   +
       KOO23835.1 201 ELVRVCKPGGRVIVVAWCH 219
                      *************997766 PP

>> Methyltransf_2  O-methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.0     2e-05     0.023      65     168 ..     114     218 ..      60     232 .. 0.77

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 2e-05
                     EEEEET-TTSHHHHHHHHH-TT-EEEEEE-HHHHHHHHHHS.-----TTEEEEES-TTTS-----SEEEEESSGGGS-H.HHHHHHHHHHHHH-- CS
  Methyltransf_2  65 slvDvGGGtGalakaivsayPtikvivfDlpeVveaAkehl.sageeervefvgGdffkdslPeaDaillkrvlhDwsd.ekcvklLkrvkkalp 157
                     +++DvG G+G   ++i+++y +  v +   p  +++A+     +g  +r++f+  d  + + P+   + l++ +   ++  + +k++ ++ + ++
      KOO23835.1 114 RVLDVGCGIGGSSRHIARTYGGSGVGITLSPVQAARANALSqAQGFGDRLQFTVADALQMPFPDNS-FDLVWSMESGEHmPDKQKFVSELVRVCK 207
                     578*****************9988877655655666655543556789**********77777543.344454444333145689999******* PP

                     TT-EEEEEE-- CS
  Methyltransf_2 158 agGkvivveav 168
                     +gG+vivv   
      KOO23835.1 208 PGGRVIVVAWC 218
                     *******9755 PP

>> MetW  Methionine biosynthesis protein MetW
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.0   3.3e-05     0.036      15     103 ..     113     207 ..     106     218 .. 0.71

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 3.3e-05
        MetW  15 srvldlGcGdGellellkeekqvdgrGleldeegvaecvakGlsviqg.......dldkdlen.fedksfdyvvlsqtlqatrnpkevldellrigr 103
                  rvld+GcG G   + ++ + + +g G+ l+   v+++ a  ls  qg        + + l++ f+d+sfd+v    +   + + ++ ++el+r+ +
  KOO23835.1 113 VRVLDVGCGIGGSSRHIARTYGGSGVGITLSP--VQAARANALSQAQGfgdrlqfTVADALQMpFPDNSFDLVWSMESGEHMPDKQKFVSELVRVCK 207
                 69*************99888888888877764..444444444444431111111455556544*********999999999999999999999965 PP

>> PCMT  Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.0   3.9e-05     0.044      58     171 ..      93     214 ..      85     221 .. 0.78

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 3.9e-05
                 -HHHHHHHHHHTT--TT...-EEEEES-TTSHHHHHHHHHHCTTCEEEEEESBHHHHHHHHHHHHHCTTC.SEEEEES-GGGTTGGG-SEEEEEESSBB CS
        PCMT  58 aphmvalalellelkkg...arvLevGsGsGyltavlarlvgekgrvvsierikelveeakrnlkkldle.nvivvvgDGrkGyeekaPYdaihvgaaa 152
                 +  mv  al +  ++ g    rvL+vG+G G  +  +ar  g +g  v+i  ++  +++a++  ++++   +++++v+D  +   +   +d ++   + 
  KOO23835.1  93 QVDMVDEALAWAGVDSGvppVRVLDVGCGIGGSSRHIARTYGGSG--VGITLSPVQAARANALSQAQGFGdRLQFTVADALQMPFPDNSFDLVWSMESG 189
                 5667777777777665522269***********************..9*99999777777776666666469*******98876677779999999999 PP

                 SS--H......HHHHTEEEEEEEEE CS
        PCMT 153 peiPe......alidQLkeGGrlvv 171
                 +++P+      +l++  k+GGr++v
  KOO23835.1 190 EHMPDkqkfvsELVRVCKPGGRVIV 214
                 9999533233257777899999987 PP

>> MTS  Methyltransferase small domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.0   4.7e-05     0.053      34     140 ..     114     217 ..      88     228 .. 0.79

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 4.7e-05
                 EEEEET-TTSHHHHHHHHHTTC.EEEEEESBHHHHHHHHHHHHHTTGC....EEEEE-STTTT.STTS-EEEEEE---STTTCHCHHHHHHHHHHHHHH CS
         MTS  34 kvlDlGcGaGvlgaalakespeaevtlvdvdarAlesakenleankle....vevvasdvlee.veekkfdlivsNPPfhagkatelavaeeliaeAke 127
                 +vlD+GcG+G  + ++a+ +       v +    +++a++n+ +++      ++++  d+l+  +++++fdl+ s   + +g++      ++++ e  +
  KOO23835.1 114 RVLDVGCGIGGSSRHIARTYGG---SGVGITLSPVQAARANALSQAQGfgdrLQFTVADALQMpFPDNSFDLVWS---MESGEH--MPDKQKFVSELVR 204
                 69******************99...5666777777777777765554455689999999888615699****987...555655..5556888888888 PP

                 HEEEEEEEEEEEE CS
         MTS 128 aLkegGeLliVan 140
                 + k+gG+ ++Va 
  KOO23835.1 205 VCKPGGRVIVVAW 217
                 8888998888875 PP

>> DREV  DREV methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   9.8e-05      0.11      90     186 ..     107     214 ..      90     220 .. 0.87

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 9.8e-05
        DREV  90 asdqedkklldlGaGdGeitkrvaptfee.........vyatelsetmrdr..lkkkkynvlsalelqetdvkldlilclnlldrcfdplklledirsa 177
                 +s+  ++++ld+G G G  ++++a t+           v a+ +    + +   +++++ v  al++   d  +dl+ +++  + + d  k++ ++  +
  KOO23835.1 107 DSGVPPVRVLDVGCGIGGSSRHIARTYGGsgvgitlspVQAARANALSQAQgfGDRLQFTVADALQMPFPDNSFDLVWSMESGEHMPDKQKFVSELVRV 205
                 578889********************99899999999977766655444442157889********9999***************************** PP

        DREV 178 lepngrviv 186
                  +p grviv
  KOO23835.1 206 CKPGGRVIV 214
                 *******98 PP

>> NAS  Nicotianamine synthase protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   0.00012      0.14     161     228 ..     149     214 ..     140     223 .. 0.85

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.00012
         NAS 161 kasklvsadedlssrmsfhtadvldvteelkaydvvflAAlvGmakeeKakviehlakkmakGavlvl 228
                 +a++ +s+ ++++ r++f  ad+l++    +++d+v+     G +  +K+k +  l+++ ++G ++++
  KOO23835.1 149 RANA-LSQAQGFGDRLQFTVADALQMPFPDNSFDLVW-SMESGEHMPDKQKFVSELVRVCKPGGRVIV 214
                 4433.456899*************************9.5689*9*******************99886 PP

>> Methyltransf_29  Putative S-adenosyl-L-methionine-dependent methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   0.0   0.00024      0.27     120     218 ..     114     215 ..      79     235 .. 0.73

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 0.00024
  Methyltransf_29 120 tvlDvGCgvas...fgayllsrdvltlslapkDeh.eaqvqfaLeRgvpailavlgtkrlpyPsrsfdlihCsrCridwteedgilllevdRvl 209
                       vlDvGCg+     + a  +    + + l+p      + +  a   g +   +v  + ++p+P +sfdl+       ++  ++ +++ e+ Rv 
       KOO23835.1 114 RVLDVGCGIGGssrHIARTYGGSGVGITLSPVQAArANALSQAQGFGDRLQFTVADALQMPFPDNSFDLVWSMESG-EHMPDKQKFVSELVRVC 206
                      5899999886511134444555556667776554304455566667777788888999************977766.6667778999******* PP

  Methyltransf_29 210 RpgGyfvls 218
                      +pgG  ++ 
       KOO23835.1 207 KPGGRVIVV 215
                      ****87765 PP

>> Methyltransf_9  Protein of unknown function (DUF1698)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   0.0   0.00027       0.3     118     217 ..     114     214 ..     100     261 .. 0.79

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.00027
                     EEEEET-TTSHHHHHHHHCT-SEEEEE---HHHHHHHHHHHCCTTTTSSEEEE---GGGS-T.---EEEEEEES-GGG-S-HHHHHHHHHCTEEE CS
  Methyltransf_9 118 tildvGcgnGyhlwrmvgegaklvvGidPselfliqfeavrkllgedqrahllplgieqlpe.leafdtvfsmGvlyhrrsPldhllqlkdqlvk 211
                     ++ldvGcg G     ++     + vGi  s +     +a+ +  g   r +       q+p   ++fd v+sm    h       +++l    + 
      KOO23835.1 114 RVLDVGCGIGGSSRHIARTYGGSGVGITLSPVQAARANALSQAQGFGDRLQFTVADALQMPFpDNSFDLVWSMESGEHMPDKQKFVSELVRVCKP 208
                     69******9998888888888899********************976655555466668887699********8777777666667777777777 PP

                     EEEEEE CS
  Methyltransf_9 212 gGelvl 217
                     gG +++
      KOO23835.1 209 GGRVIV 214
                     776665 PP

>> Spore_YtfJ  Sporulation protein YtfJ (Spore_YtfJ)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.7   0.00044      0.49      11      48 ..     112     145 ..     107     146 .. 0.86

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00044
  Spore_YtfJ  11 PvskvsfGfgaGgsefkskkekepfgggsgaGvsitPv 48 
                 Pv  + +G+g+Ggs+     +     ggsg+G++++Pv
  KOO23835.1 112 PVRVLDVGCGIGGSSR----HIARTYGGSGVGITLSPV 145
                 6677789*********....566779***********7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (382 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       446  (0.0248759); expected 358.6 (0.02)
Passed bias filter:                      355  (0.0198003); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                        16  (0.000892409); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              16  [number of targets reported over threshold]
# CPU time: 0.49u 0.25s 00:00:00.74 Elapsed: 00:00:00.41
# Mc/sec: 2817.94
//
Query:       KOO23836.1  [L=326]
Description: 60s acidic ribosomal protein p0 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.3e-21   75.8   0.0    4.2e-21   75.0   0.0    1.4  1  Ribosomal_L10  Ribosomal protein L10
    4.2e-18   65.1   0.3    7.2e-18   64.4   0.3    1.4  1  RL10P_insert   Insertion domain in 60S ribosomal protein L10P
    4.4e-10   40.0   6.2    4.4e-10   40.0   6.2    2.2  3  Ribosomal_60s  60s Acidic ribosomal protein
  ------ inclusion threshold ------
       0.74    8.8   7.9        1.2    8.1   7.9    1.3  1  DEC-1_N        DEC-1 protein, N-terminal region


Domain annotation for each model (and alignments):
>> Ribosomal_L10  Ribosomal protein L10
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   75.0   0.0   9.4e-25   4.2e-21       3      99 ..       4     108 ..       2     109 .. 0.93

  Alignments for each domain:
  == domain 1  score: 75.0 bits;  conditional E-value: 9.4e-25
                    CCCHCCCCCCCCCCCTTSSEEEEEE-TTS-HHHHHHCCCHHHHHGCEEEEESCCCCCCCCHCCTSS.S.........SCGCCSSSEEEEEESS-TC CS
  Ribosomal_L10   3 kekKeelvkelkellkkyksvvvvdyegltvaqlqelRkklrengaelkvvKntlmrrAleetgeeek.........lkellkgpvalvftnedpv 89 
                    k+kK+++++ l+e+l+ky  +++vd + ++++q+ ++R +lr++ ael+++Knt++r+ +++  e++          + ++++g+v+++ft++d  
     KOO23836.1   4 KAKKIAYFAHLEECLNKYPRAFIVDADFVGSKQISDIRIALRGK-AELVFGKNTMIRKCIRNMCEKDPedphpewesIIPYMVGNVGFIFTTGDLD 98 
                    89******************************************.*****************999832466777778******************* PP

                    HHHHCCCCCH CS
  Ribosomal_L10  90 alakvleefa 99 
                    ++ +v++ef 
     KOO23836.1  99 KIEDVVKEFV 108
                    ********95 PP

>> RL10P_insert  Insertion domain in 60S ribosomal protein L10P
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.4   0.3   1.6e-21   7.2e-18       1      71 []     113     182 ..     113     182 .. 0.99

  Alignments for each domain:
  == domain 1  score: 64.4 bits;  conditional E-value: 1.6e-21
  RL10P_insert   1 AraGtiAtedviipagplelaPgsiepeLrklglptklkkGkivleedylvckkGetltseqaqlLklLgi 71 
                   A+aG iA++   i++gp++l P+++  ++++l++ tk++kG i++ +d++v+k G++++s++a+lL +Lg+
    KOO23836.1 113 AKAGVIAPNGCKIEKGPTGLDPAQT-AFFQALNIATKINKGSIEIVNDVEVIKTGQKVGSSEAALLAKLGV 182
                   9************************.*******************************************98 PP

>> Ribosomal_60s  60s Acidic ribosomal protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.0         1   4.5e+03      35      55 ..     100     115 ..      96     125 .. 0.53
   2 ?   -2.9   0.1       2.4   1.1e+04      16      46 ..     140     170 ..     136     178 .. 0.58
   3 !   40.0   6.2   9.8e-14   4.4e-10       2      88 .]     233     325 ..     232     325 .. 0.84

  Alignments for each domain:
  == domain 1  score: -1.7 bits;  conditional E-value: 1
                    XXXXXXXXXXXXXXXXXXXXX CS
  Ribosomal_60s  35 ieellangaaklaaaaaaaaa 55 
                    ie+++++  +      aaa a
     KOO23836.1 100 IEDVVKEFVKP-----AAAKA 115
                    55555555433.....22222 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 2.4
                    XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
  Ribosomal_60s  16 veveaarvkllvkalegkdieellangaakl 46 
                     +++++++k+   ++e ++  e++++g++ +
     KOO23836.1 140 FQALNIATKINKGSIEIVNDVEVIKTGQKVG 170
                    5555555666666666666667777777653 PP

  == domain 3  score: 40.0 bits;  conditional E-value: 9.8e-14
                    XXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXXXXXXXX.....XXXXXXXXXXXXXXXXXXXXXXXXXXXX.XX--SS--STTT CS
  Ribosomal_60s   2 ptaenikkvlkaagveveaarvkl.lvkalegkdieellangaakla.....aaaaaaaaaaaaaaaaaaaeekkkeeeeeEeedddmGfgLF 88 
                    p+ ++ ++++ +  ++v a+++++ ++++   k+i+++l n+ ++       +++aa+a+aaa+++a+a+a+++k+ e+e  ee++++ f+LF
     KOO23836.1 233 PNDASFPHMFIKGAKNVVAVALEAgFIEFDVVKKIKDMLDNPDKYSGgggggGGGAAPAPAAAKGGAPAPAAAAKAPEPEPAEEEEAAAFDLF 325
                    7788999***************986888888************9977****97778888888777777777666666666568999999***9 PP

>> DEC-1_N  DEC-1 protein, N-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.1   7.9   0.00026       1.2     114     153 ..     286     326 .]     271     326 .] 0.86

  Alignments for each domain:
  == domain 1  score: 8.1 bits;  conditional E-value: 0.00026
     DEC-1_N 114 Gaaapapalaaapppapapvpddpapapaap.qaaafaffn 153
                 G aapapa a    papa ++  p p pa   +aaaf +f+
  KOO23836.1 286 GGAAPAPAAAKGGAPAPAAAAKAPEPEPAEEeEAAAFDLFD 326
                 679*****999999********9999999761467888886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (326 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       570  (0.0317921); expected 358.6 (0.02)
Passed bias filter:                      484  (0.0269954); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.48u 0.22s 00:00:00.70 Elapsed: 00:00:00.39
# Mc/sec: 2526.43
//
Query:       KOO23837.1  [L=472]
Description: hypothetical protein Ctob_000762 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    5.4e-29   99.8  10.2    5.4e-07   30.2   0.1    6.6  6  WD40         WD domain, G-beta repeat
    1.1e-18   67.3   9.2    2.2e-08   34.3   0.4    4.3  4  ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain
      1e-06   28.8   0.5       0.45   10.4   0.0    3.8  4  eIF2A        Eukaryotic translation initiation factor eIF2A
    8.2e-05   21.4   1.3       0.11   11.2   0.0    2.6  3  Nup160       Nucleoporin Nup120/160
     0.0013   17.7   5.2      0.094   11.7   1.8    3.8  3  Ge1_WD40     WD40 region of Ge1, enhancer of mRNA-decapping p
  ------ inclusion threshold ------
      0.098   11.2   0.1        0.6    8.6   0.0    2.0  2  ELYS-bb      beta-propeller of ELYS nucleoporin
       0.15   10.0   1.0       0.42    8.5   0.5    1.9  1  IKI3         IKI3 family
       0.55   10.6   2.4       0.89   10.0   1.2    1.9  2  LIFR_N       Leukemia inhibitory factor receptor N-terminal d


Domain annotation for each model (and alignments):
>> WD40  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   0.2   2.9e-06    0.0065      11      38 .]     195     222 ..     186     222 .. 0.86
   2 !    9.3   0.0   0.00095       2.1       2      34 ..     227     258 ..     226     262 .. 0.82
   3 !   30.2   0.1   2.4e-10   5.4e-07       4      38 .]     270     305 ..     267     305 .. 0.93
   4 !   17.1   0.0   3.4e-06    0.0076       2      38 .]     318     358 ..     317     358 .. 0.81
   5 !    6.3   0.3    0.0085        19       2      29 ..     363     390 ..     362     401 .. 0.78
   6 !   20.5   0.0   2.7e-07   0.00062       6      38 .]     410     443 ..     406     443 .. 0.91

  Alignments for each domain:
  == domain 1  score: 17.3 bits;  conditional E-value: 2.9e-06
                 SSEEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40  11 ssvtslafspdgawlasGsdDgtvriWd 38 
                 s+vtsl++   g+++a G+ D++v iWd
  KOO23837.1 195 SHVTSLSWIEQGHYMAVGTSDHKVQIWD 222
                 44****************66*******9 PP

  == domain 2  score: 9.3 bits;  conditional E-value: 0.00095
                 EEEEEEESS.SSEEEEEEETTSSEEEEEETTSEE CS
        WD40   2 qclrtltGH.ssvtslafspdgawlasGsdDgtv 34 
                 ++lr+ +GH + v +la+  +g++l+sG++D  +
  KOO23837.1 227 KQLRSMDGHsQRVGALAW--NGPMLSSGGRDARI 258
                 67999****666****66..8888*****99766 PP

  == domain 3  score: 30.2 bits;  conditional E-value: 2.4e-10
                 EEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40   4 lrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 
                 + tl+GH + v++l++s +g++lasG+ D+ + iWd
  KOO23837.1 270 TATLKGHtQEVCGLKWSANGTMLASGGNDNLLNIWD 305
                 6799***888*************************9 PP

  == domain 4  score: 17.1 bits;  conditional E-value: 3.4e-06
                 EEEEEEESS.SSEEEEEEETTSSEE.EEEE..TTSEEEEEE CS
        WD40   2 qclrtltGH.ssvtslafspdgawl.asGs..dDgtvriWd 38 
                 ++l+ +++H   v ++a++p ++ l asG+   D+ +r+W+
  KOO23837.1 318 TPLHRIEAHrAAVKAIAWCPWQKNLlASGGgtADRCIRFWN 358
                 689999***888****98888888625774447*******8 PP

  == domain 5  score: 6.3 bits;  conditional E-value: 0.0085
                 EEEEEEESSSSEEEEEEETTSSEEEEEE CS
        WD40   2 qclrtltGHssvtslafspdgawlasGs 29 
                  cl  +++Hs v++l++s++ + ++s++
  KOO23837.1 363 ACLNQIDTHSQVCALQWSKHEKEIVSSH 390
                 6889999**88****9999999999974 PP

  == domain 6  score: 20.5 bits;  conditional E-value: 2.7e-07
                 EEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40   6 tltGH.ssvtslafspdgawlasGsdDgtvriWd 38 
                 +ltGH   v ++a spdg+ ++s+  D t+r+W+
  KOO23837.1 410 ELTGHtARVLHMAQSPDGQTIVSAAADETLRFWK 443
                 699**666**************9988*******6 PP

>> ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.3   0.4   9.9e-12   2.2e-08      29      90 ..     185     245 ..     161     247 .. 0.88
   2 !   15.7   0.1   6.1e-06     0.014      27      66 ..     266     305 ..     249     311 .. 0.83
   3 !   14.8   0.3   1.2e-05     0.027      36      91 ..     325     381 ..     311     382 .. 0.84
   4 !    5.5   0.0    0.0093        21      35      70 ..     412     447 ..     393     466 .. 0.80

  Alignments for each domain:
  == domain 1  score: 34.3 bits;  conditional E-value: 9.9e-12
  ANAPC4_WD40  29 vwtleedkedsevrsLaWkpdgklLavaysdgevrlldaesgkvvhslsvksekavtclgWg 90 
                  + +l e++ ds+v+sL+W ++g+ +av++sd +v++ d+ ++k ++s++ +s+ +v  l W+
   KOO23837.1 185 IDQLMETSADSHVTSLSWIEQGHYMAVGTSDHKVQIWDVAKKKQLRSMDGHSQ-RVGALAWN 245
                  445578899******************************************99.6*****97 PP

  == domain 2  score: 15.7 bits;  conditional E-value: 6.1e-06
  ANAPC4_WD40  27 qrvwtleedkedsevrsLaWkpdgklLavaysdgevrlld 66 
                  q+  t++ +++ +ev +L+W+ +g++La + +d+ +++ d
   KOO23837.1 266 QQHLTATLKGHTQEVCGLKWSANGTMLASGGNDNLLNIWD 305
                  555556678999**********************999876 PP

  == domain 3  score: 14.8 bits;  conditional E-value: 1.2e-05
  ANAPC4_WD40  36 kedsevrsLaWkpdgk.lLav..aysdgevrlldaesgkvvhslsvksekavtclgWge 91 
                  ++   v+++aW p  k lLa   +++d  +r+ +a +g ++++++++s+  v+ l+W++
   KOO23837.1 325 AHRAAVKAIAWCPWQKnLLASggGTADRCIRFWNATTGACLNQIDTHSQ--VCALQWSK 381
                  677899*****996651677633578999******************99..******86 PP

  == domain 4  score: 5.5 bits;  conditional E-value: 0.0093
  ANAPC4_WD40  35 dkedsevrsLaWkpdgklLavaysdgevrlldaesg 70 
                  +++  +v ++a +pdg+ ++ a +d ++r+ ++ sg
   KOO23837.1 412 TGHTARVLHMAQSPDGQTIVSAAADETLRFWKILSG 447
                  67788999********************99987765 PP

>> eIF2A  Eukaryotic translation initiation factor eIF2A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.8   0.1    0.0049        11      40     136 ..     174     227 ..     162     250 .. 0.63
   2 !    6.5   0.0     0.003       6.8      79     133 ..     252     307 ..     248     318 .. 0.77
   3 ?    1.3   0.0      0.12   2.7e+02      50      91 ..     319     360 ..     312     366 .. 0.74
   4 !   10.4   0.0    0.0002      0.45      52     121 ..     364     436 ..     358     462 .. 0.75

  Alignments for each domain:
  == domain 1  score: 5.8 bits;  conditional E-value: 0.0049
                 EEEESSSTT--E.EECCEESSS.EEEEEE-TTSS-EEEEESSSSCEEEEEECSCEEEEEEEEES--EEEE-TTSSEEEEE-TTSSS-EEEEEETTTTE CS
       eIF2A  40 elyliklkkkks.evvelkkegpihdvaWspkskefaviyGkmpakvslfdlkvkviskleeqkrNtiffspkgklvllaGfgnlaGeleiwdvkkkk 136
                 ++yl +++++++ + +e + +  +  ++W ++++ +av  G ++ kv+++d+                                           kkk
  KOO23837.1 174 SVYLWNANDGSIdQLMETSADSHVTSLSWIEQGHYMAV--GTSDHKVQIWDVA------------------------------------------KKK 227
                 56666666655413456666666777777777776665..7777777777764..........................................222 PP

  == domain 2  score: 6.5 bits;  conditional E-value: 0.003
                 SSSSCEEEEEECS....CEEEEEEEEES--EEEE-TTSSEEEEE-TTSSS-EEEEEETT CS
       eIF2A  79 Gkmpakvslfdlk....vkviskleeqkrNtiffspkgklvllaGfgnlaGeleiwdvk 133
                 G  +a+++ +d++    + ++ k ++q+   +++s++g++++ +G  nl   l+iwd  
  KOO23837.1 252 GGRDARIVQHDVRaqqhLTATLKGHTQEVCGLKWSANGTMLASGGNDNL---LNIWDDR 307
                 66677777788864444555666677888899*****************...9999976 PP

  == domain 3  score: 1.3 bits;  conditional E-value: 0.12
                 -EEECCEESSS.EEEEEE-TTSS-EEEEES.SSSCEEEEEECS CS
       eIF2A  50 ksevvelkkegpihdvaWspkskefaviyG.kmpakvslfdlk 91 
                 + +++e +++  ++++aW p +k+++   G  +++++ +++ +
  KOO23837.1 319 PLHRIEAHRA-AVKAIAWCPWQKNLLASGGgTADRCIRFWNAT 360
                 5566666555.59999999999999888765788899998875 PP

  == domain 4  score: 10.4 bits;  conditional E-value: 0.0002
                 EECCEESSS.EEEEEE-TTSS-EEEEESSSSCEEEEEEC.SCEEEEEEEEES--..EEEE-TTSSEEEEE-TT CS
       eIF2A  52 evvelkkegpihdvaWspkskefaviyGkmpakvslfdl.kvkviskleeqkrN..tiffspkgklvllaGfg 121
                 +  +++++ ++ +++Ws+++ke++  +G++ ++  l++   + + ++l  + +    +  sp g+ ++ a   
  KOO23837.1 364 CLNQIDTHSQVCALQWSKHEKEIVSSHGYSHNQLILWKYpSMVKAAELTGHTARvlHMAQSPDGQTIVSAAAD 436
                 5668999999**************************9984455566665555541145668888888887655 PP

>> Nup160  Nucleoporin Nup120/160
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.2   0.0   4.8e-05      0.11     220     257 ..     192     233 ..     178     256 .. 0.81
   2 !    7.8   0.3   0.00048       1.1     238     283 ..     350     391 ..     347     444 .. 0.64
   3 ?   -0.6   0.0      0.17   3.9e+02     225     249 ..     421     446 ..     414     462 .. 0.79

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 4.8e-05
                 EEET.........TTTEEEEEETT-EEEEEETTTTEEEEEEE CS
      Nup160 220 dvavavvei....gqtylfalsrdgkLrvWnlltgkclatid 257
                 ++ ++v++     +  y ++ ++d+k+++W+++ +k+l+++d
  KOO23837.1 192 SADSHVTSLswieQGHYMAVGTSDHKVQIWDVAKKKQLRSMD 233
                 444555544555588889999******************998 PP

  == domain 2  score: 7.8 bits;  conditional E-value: 0.00048
                 TT-EEEEEETTTTEEEEEEE--.-SSSTTS--SSEESEEESSSSEE CS
      Nup160 238 rdgkLrvWnlltgkclatidllrdeeaqdessskstldpaesslir 283
                  d+ +r Wn +tg cl +id+     +q++  ++s+ + +  s   
  KOO23837.1 350 ADRCIRFWNATTGACLNQIDTH----SQVCALQWSKHEKEIVSSHG 391
                 7999******************....77777777554444333333 PP

  == domain 3  score: -0.6 bits;  conditional E-value: 0.17
                 .....TTTEEEEEETT-EEEEEETTT CS
      Nup160 225 vvei.gqtylfalsrdgkLrvWnllt 249
                 ++++ + ++++++  d +Lr W +l+
  KOO23837.1 421 MAQSpDGQTIVSAAADETLRFWKILS 446
                 44556788999999********8876 PP

>> Ge1_WD40  WD40 region of Ge1, enhancer of mRNA-decapping protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.3   0.0      0.12   2.6e+02     180     220 ..     187     227 ..     155     241 .. 0.80
   2 ?    2.4   2.0     0.027        61     180     234 ..     269     327 ..     238     406 .. 0.60
   3 !   11.7   1.8   4.2e-05     0.094     182     223 ..     409     451 ..     320     460 .. 0.67

  Alignments for each domain:
  == domain 1  score: 0.3 bits;  conditional E-value: 0.12
    Ge1_WD40 180 gllkieehsliveaafspdGtalatasedGevkffqvyled 220
                  l++ + +s++++ ++   G  +a+ ++d +v+ + v  ++
  KOO23837.1 187 QLMETSADSHVTSLSWIEQGHYMAVGTSDHKVQIWDVAKKK 227
                 56777888889999999999999999999999999987655 PP

  == domain 2  score: 2.4 bits;  conditional E-value: 0.027
    Ge1_WD40 180 gllkieehs.liveaafspdGtalatasedGevkffq.vyledeee..prCLheWkPhd 234
                  +  ++ h+ ++    +s++Gt la   +d ++  +   yl+ +++  +  Lh+   h 
  KOO23837.1 269 LTATLKGHTqEVCGLKWSANGTMLASGGNDNLLNIWDdRYLSASTNvcETPLHRIEAHR 327
                 44555666546777777888888888888877777752344433221133356555554 PP

  == domain 3  score: 11.7 bits;  conditional E-value: 4.2e-05
    Ge1_WD40 182 lkieehs.liveaafspdGtalatasedGevkffqvyledeee 223
                  +++ h+  + + a spdG ++  a++d +++f+++   +e+ 
  KOO23837.1 409 AELTGHTaRVLHMAQSPDGQTIVSAAADETLRFWKILSGGEQA 451
                 345555447999************************8775543 PP

>> ELYS-bb  beta-propeller of ELYS nucleoporin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.6   0.0   0.00027       0.6     218     254 ..     192     228 ..     184     248 .. 0.76
   2 ?   -0.5   0.0      0.16   3.7e+02     200     251 ..     258     308 ..     248     315 .. 0.85

  Alignments for each domain:
  == domain 1  score: 8.6 bits;  conditional E-value: 0.00027
     ELYS-bb 218 psgvavsalsyisrtnqlavgfsdgylslwnlktlkk 254
                  +   v++ls+i++   +avg sd  +++w++   k+
  KOO23837.1 192 SADSHVTSLSWIEQGHYMAVGTSDHKVQIWDVAKKKQ 228
                 446789************************9865443 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 0.16
     ELYS-bb 200 lreaatregrhlclqlaspsgvavsalsyisrtnqlavgfsdgylslwnlkt 251
                 + +  +r+++hl   l++ +   v+ l++ +    la g  d  l++w+ + 
  KOO23837.1 258 IVQHDVRAQQHLTATLKGHT-QEVCGLKWSANGTMLASGGNDNLLNIWDDRY 308
                 5566789999***9999887.57899**********************8665 PP

>> IKI3  IKI3 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.5   0.5   0.00019      0.42     204     330 ..     190     304 ..     179     308 .. 0.73

  Alignments for each domain:
  == domain 1  score: 8.5 bits;  conditional E-value: 0.00019
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX..XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
        IKI3 204 klslddskvtIsWRGDgeYfavssleaetgerralrvye..regaLdsvsekvdgleeaLaWrPsGsliAstqrkkdksldvvfFErNGLrhgefslrl 300
                 ++s+d++ +++sW   g+Y+av +         ++++++  ++ +L s+  +++   +aLaW  +G ++ s  r+     ++v        + +++ +l
  KOO23837.1 190 ETSADSHVTSLSWIEQGHYMAVGTS------DHKVQIWDvaKKKQLRSMDGHSQR-VGALAW--NGPMLSSGGRDA----RIVQHDVR--AQQHLTATL 273
                 4558999999************997......356889983344668888666555.578999..699999988833....34444433..355667777 PP

                 .XXXXXXXXXXXXXXXXXXXXXXXXX.XXXX CS
        IKI3 301 ekeeeevqsLaWsadSevLavrledr.vqlw 330
                 + +++ev  L+Wsa++++La   +d+ +++w
  KOO23837.1 274 KGHTQEVCGLKWSANGTMLASGGNDNlLNIW 304
                 79*****************996655546777 PP

>> LIFR_N  Leukemia inhibitory factor receptor N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.0       3.4   7.5e+03       7      15 ..     216     224 ..     210     233 .. 0.64
   2 ?   10.0   1.2    0.0004      0.89      14      67 ..     336     392 ..     331     400 .. 0.86

  Alignments for each domain:
  == domain 1  score: -2.6 bits;  conditional E-value: 3.4
      LIFR_N   7 nnlkvWdCs 15 
                 +++++Wd +
  KOO23837.1 216 HKVQIWDVA 224
                 456667654 PP

  == domain 2  score: 10.0 bits;  conditional E-value: 0.0004
      LIFR_N  14 CsWkapsgagrgtvyevCie...nrsrsCyrlektnikipalspgdheitinslhdf 67 
                 C W+  + a+ g + + Ci+     + +C +   t+ ++ al+ + he +i s h +
  KOO23837.1 336 CPWQKNLLASGGGTADRCIRfwnATTGACLNQIDTHSQVCALQWSKHEKEIVSSHGY 392
                 99**9999999999*****644256779***********************999987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (472 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       534  (0.0297841); expected 358.6 (0.02)
Passed bias filter:                      401  (0.022366); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.60u 0.27s 00:00:00.87 Elapsed: 00:00:00.43
# Mc/sec: 3264.67
//
Query:       KOO23838.1  [L=492]
Description: hypothetical protein Ctob_000761 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.01   15.1   2.4      0.017   14.4   2.4    1.4  1  DUF3150   Protein of unknown function (DUF3150)
          1    9.0   5.6       0.26   10.9   1.1    2.0  2  GrpE      GrpE


Domain annotation for each model (and alignments):
>> DUF3150  Protein of unknown function (DUF3150)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.4   2.4   1.9e-06     0.017      93     188 ..     187     279 ..     174     341 .. 0.86

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 1.9e-06
     DUF3150  93 ikqeFekekqeFLarydravedWinenpewaeiIraavpsaetvaerlsfdyqlvkvqppeekeeskgLeeevkgLggqlfaEiakearelleksl 188
                  +++  ++ +e+ ar+++ave +i+e    +  ++++ + + +++e l ++++l++++ +ee++e+++++++v++L  + ++E+a   + +l+k l
  KOO23838.1 187 FNNHARRAVAELRARHEAAVEGFIAE---HRPQMHDQFKRTHHAQETLDAKFTLTRLTLAEEFTEANKYAKRVQQLTRRDAEEAATLSELALQKKL 279
                 45555667788889999999999999...6899999999********************************************9999888887766 PP

>> GrpE  GrpE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   1.1   2.9e-05      0.26      26      79 ..     171     225 ..     136     244 .. 0.76
   2 ?   -0.4   1.2     0.091   8.1e+02      30      61 ..     223     254 ..     211     291 .. 0.58

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 2.9e-05
                 HCTTSCCCCCCTTTTTTTTHHHHHHHHHHHHHHHHHHHHHHHHHH.HHHHHHHHH CS
        GrpE  26 kevkelkekllrllaefenlrkrtekekeeakkfaiekfakdLLp.vlDnleral 79 
                 +e++++++++    aef n+ +r+  e+ + ++ a+e f+ +  p + D+++r  
  KOO23838.1 171 AEARQFNKEWTVRMAEFNNHARRAVAELRARHEAAVEGFIAEHRPqMHDQFKRTH 225
                 4899***********************************9876551345666655 PP

  == domain 2  score: -0.4 bits;  conditional E-value: 0.091
                 SCCCCCCTTTTTTTTHHHHHHHHHHHHHHHHH CS
        GrpE  30 elkekllrllaefenlrkrtekekeeakkfai 61 
                   + + + l a+f   r  +++e+ ea k+a+
  KOO23838.1 223 RTHHAQETLDAKFTLTRLTLAEEFTEANKYAK 254
                 44444444445555555555555555555543 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (492 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       913  (0.0509231); expected 358.6 (0.02)
Passed bias filter:                      389  (0.0216967); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.56u 0.23s 00:00:00.79 Elapsed: 00:00:00.41
# Mc/sec: 3566.90
//
Query:       KOO23839.1  [L=375]
Description: mitochondrial RNA editing ligase 1 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    7.6e-14   52.3   0.0    1.2e-13   51.7   0.0    1.3  1  RNA_ligase  RNA ligase
    6.5e-05   23.0   0.0    0.00011   22.3   0.0    1.3  1  T4_Rnl2_C   T4 RNA ligase 2 C-terminal


Domain annotation for each model (and alignments):
>> RNA_ligase  RNA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.7   0.0   1.3e-17   1.2e-13       2     159 ..       9     232 ..       8     234 .. 0.71

  Alignments for each domain:
  == domain 1  score: 51.7 bits;  conditional E-value: 1.3e-17
                 EEEEEEE-SSEEEEEEEE...TTEEEEETTCEB...C.TTTHHHHHHTHHHHHHHHHHHHH.........ECCEEEEEEEES.SS..TT.SS....... CS
  RNA_ligase   2 evvvtEKlDGtnfriylv...kevgvasRsqil...p.fgeekfkefkrwaaalrkklkekla.......neelilyGElighsikygg.lpk...... 79 
                 e+ +tEK +G+nf+  +    + v +a+Rs+ l   + f+  k++    + + +  +l+  l        n +li+yGEl+g      g +p+      
  KOO23839.1   9 EWLCTEKAHGANFSAAVAcdgQ-VHFAARSGLLaasDnFYGYKSQGLDAYLVPRVLALRTALVrdgfvtaNDTLIVYGELCG------GhYPHpavpav 100
                 8*************99996433.**********54313333333333333333333555555589999**999*********......33555556667 PP

                 .................EEEEEEEEEEE..CTT..................BECE--HHHH..HHHHHCCT.B..EEEEE.SSHHHHHCCC........ CS
  RNA_ligase  80 .................efyvFdifdir..dke..................eqrylspdev..ealakglg.tvpvlyegkflaaeellel........ 130
                                   f++Fdi+++     +                    r+l++d +    +a++l  t p+  +g   +++++l+l        
  KOO23839.1 101 aggvgpvqrgvwyspalVFIAFDIAVVPvaA-DaaagdgrladmalssshqRTRFLDFDVAraASIAADLRfTQPLR-RG---TLAHCLDLdvrfasti 194
                 777888888888888999*******988752.2579999*********99999999999885344555553444444.22...4566677777788888 PP

                 ........H..HHHTC--EEEEEESSSSBETTEBSEEE CS
  RNA_ligase 131 .......ll..skgnkrEGlVikpeselyknkgraifK 159
                         l  +++n++EGlV++p++e   + gr ++K
  KOO23839.1 195 pttlglpTLpaEHSNWAEGLVVRPVREPPPDGGRGLVK 232
                 888888513457999**********9965454566666 PP

>> T4_Rnl2_C  T4 RNA ligase 2 C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.3   0.0   1.2e-08   0.00011      10      56 ..     273     322 ..     267     341 .. 0.85

  Alignments for each domain:
  == domain 1  score: 22.3 bits;  conditional E-value: 1.2e-08
                 HHHHHGGG--HHHHHHHHHTSS--S...TTTHHHHHHHHHHHHHHHHHHT CS
   T4_Rnl2_C  10 lleeierYvtenRLnNviSKigeit...rknfgkvlkafvqDaledfnke 56 
                 l  e+++ v+++RL++v+SK  +++   +    ++l  f+ D+ e   ++
  KOO23839.1 273 LRYEMLAAVNQQRLDSVLSKSARVDaadKAACRRLLHDFKVDVAEALAED 322
                 56789999*****************87677777899**********9999 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (375 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       288  (0.0160634); expected 358.6 (0.02)
Passed bias filter:                      239  (0.0133304); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.47u 0.24s 00:00:00.71 Elapsed: 00:00:00.43
# Mc/sec: 2648.43
//
Query:       KOO23840.1  [L=293]
Description: hypothetical protein Ctob_000775 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (293 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       461  (0.0257125); expected 358.6 (0.02)
Passed bias filter:                      287  (0.0160076); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.42u 0.25s 00:00:00.67 Elapsed: 00:00:00.39
# Mc/sec: 2237.20
//
Query:       KOO23841.1  [L=300]
Description: hypothetical protein Ctob_000772 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    0.00011   22.7   0.0       0.87   10.3   0.0    2.5  2  DUF2470   Protein of unknown function (DUF2470)


Domain annotation for each model (and alignments):
>> DUF2470  Protein of unknown function (DUF2470)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.3   0.0   4.9e-05      0.87      10      59 ..      19      76 ..      17      83 .. 0.72
   2 !    9.9   0.0   6.4e-05       1.1      16      77 .]     143     215 ..     125     215 .. 0.69

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 4.9e-05
                HH-HHHHHHHHHHCS.......T-TTCCEEEEEEE-SSEEEEEE...C.......CEEEEEE CS
     DUF2470 10 kDHaddlllylrhyg.......kvkeaksarmtdidldgltlrl...gakags..ektvrip 59
                ++H + ll+++r  g       +++++++ r++++d +g+t++    +    s  +  +++p
  KOO23841.1 19 AEHHEELLRIARSIGdfdgvdwSKEALAAVRIVGVDDYGITVEEvlcS----ShdQRCIAVP 76
                78****************6664333335559***********944321....2234555555 PP

  == domain 2  score: 9.9 bits;  conditional E-value: 6.4e-05
                 HHHHHHHCST-TTCCEEEEEEE-SSEEEEEE..........C..........CEEEEEE-SS---SCCHHHHHHHHH CS
     DUF2470  16 lllylrhygkvkeaksarmtdidldgltlrl..........gakags.....ektvripFdpplkswaearerLveM 77 
                 l+++  ++ + +++++a++  ++ +gl l++          g    +     +    + +d p++s++e+  rL++M
  KOO23841.1 143 LRHLRDAFAPTEQLEKATLSQLNFEGLSLECetillgdeelG----GvlkrfRWSGSVLYDTPCRSAEEVEDRLIAM 215
                 444444444555558888888888888888888887543321....22222444556778****************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (300 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       570  (0.0317921); expected 358.6 (0.02)
Passed bias filter:                      440  (0.0245412); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.22s 00:00:00.67 Elapsed: 00:00:00.38
# Mc/sec: 2352.75
//
Query:       KOO23842.1  [L=115]
Description: hypothetical protein Ctob_000773 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.099   12.4   0.6       0.19   11.5   0.5    1.5  2  MotA_ExbB  MotA/TolQ/ExbB proton channel family


Domain annotation for each model (and alignments):
>> MotA_ExbB  MotA/TolQ/ExbB proton channel family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.0     0.089   1.6e+03      81     102 ..      45      66 ..      37      70 .. 0.71
   2 ?   11.5   0.5   1.1e-05      0.19      39      80 ..      71     112 ..      54     115 .] 0.82

  Alignments for each domain:
  == domain 1  score: -1.2 bits;  conditional E-value: 0.089
                 SSGGCTHHHHHHHHHHHHHHHH CS
   MotA_ExbB  81 adlakvapgiaeALiaTalGlv 102
                 a   +v p +   L  T +Gl 
  KOO23842.1  45 ARHRAVVPYVVASLALTTVGLS 66 
                 4456788888888888888885 PP

  == domain 2  score: 11.5 bits;  conditional E-value: 1.1e-05
                 HHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS CS
   MotA_ExbB  39 eerlekglsilatigslaPllGLlGTVlGlieafqaladags 80 
                  + l+k l+  a++ ++    G++G+++G++ +++ l+ a++
  KOO23842.1  71 SDDLRKVLPAGASTSAYWLQTGMIGALTGMLAVLHVLSFAKN 112
                 667778888888888888889***************996554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (115 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       460  (0.0256568); expected 358.6 (0.02)
Passed bias filter:                      276  (0.0153941); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.28s 00:00:00.65 Elapsed: 00:00:00.43
# Mc/sec: 805.03
//
Query:       KOO23843.1  [L=189]
Description: hypothetical protein Ctob_000780 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (189 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       283  (0.0157845); expected 358.6 (0.02)
Passed bias filter:                      230  (0.0128284); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.24s 00:00:00.62 Elapsed: 00:00:00.39
# Mc/sec: 1447.21
//
Query:       KOO23844.1  [L=83]
Description: hypothetical protein Ctob_000774 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (83 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       191  (0.0106531); expected 358.6 (0.02)
Passed bias filter:                      160  (0.00892409); expected 358.6 (0.02)
Passed Vit filter:                        10  (0.000557756); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.24s 00:00:00.57 Elapsed: 00:00:00.39
# Mc/sec: 645.77
//
Query:       KOO23845.1  [L=195]
Description: FHA-domain protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    5.8e-13   49.0   0.0    8.5e-13   48.5   0.0    1.2  1  FHA           FHA domain
    1.1e-08   35.3   0.0    1.7e-08   34.6   0.0    1.3  1  Yop-YscD_cpl  Inner membrane component of T3SS, cytoplasmic d
     0.0072   16.4   0.0      0.012   15.7   0.0    1.4  1  zf-CRD        Cysteine rich domain with multizinc binding reg


Domain annotation for each model (and alignments):
>> FHA  FHA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.5   0.0   1.4e-16   8.5e-13       1      52 [.      67     115 ..      67     127 .. 0.94

  Alignments for each domain:
  == domain 1  score: 48.5 bits;  conditional E-value: 1.4e-16
                 EEEESSTTSSEETTSTTSTTTEEEEEEETTCEEEEEEEESSSSSEEETTEEE CS
         FHA   1 vtiGRssdcdivlddpsiSrkHalikfdkgsgkvyleDlgSknGtfvNgqri 52 
                 +t+GR+++c+++l d ++S +Ha+++ d+   +  leDl S+nGtfvNg+++
  KOO23845.1  67 YTLGRAESCTLRLTDNKVSGVHARLSHDGA--NAILEDL-SSNGTFVNGTKM 115
                 89****************************..******9.9********987 PP

>> Yop-YscD_cpl  Inner membrane component of T3SS, cytoplasmic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.6   0.0   2.9e-12   1.7e-08      12      75 ..      60     124 ..      52     133 .. 0.84

  Alignments for each domain:
  == domain 1  score: 34.6 bits;  conditional E-value: 2.9e-12
                   EEETTEEEEEES-TT-SEE---TTS-TT-EEEEEETTEEEEEE-CESS--EETTEE-S..ECC--T CS
  Yop-YscD_cpl  12 veLeegevviGsdedcDivLsDkevsrkhlkLeveeesvrledlgsrngllvngerve..elelrp 75 
                   +e+++g +++G++e+c + L+D++vs +h++L+ +  +  ledl s ng++vng+++   ++++r+
    KOO23845.1  60 LEMDGGPYTLGRAESCTLRLTDNKVSGVHARLSHDGANAILEDL-SSNGTFVNGTKMLlmQQQMRR 124
                   4568999***********************************66.779******998654444555 PP

>> zf-CRD  Cysteine rich domain with multizinc binding regions
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.0     2e-06     0.012      56     118 ..     132     193 ..     116     195 .] 0.84

  Alignments for each domain:
  == domain 1  score: 15.7 bits;  conditional E-value: 2e-06
      zf-CRD  56 gcsraecsglLkpieekliekipeevlegneveqkilkdylaekgltlqdvlkevlekldkge 118
                 +c++++  +l++p++++ +  +  +   gn +e+++l++yl+ kg+ + d++ e+l++ ++g+
  KOO23845.1 132 QCRHPTETHLMSPLRTRRPPVLT-TSALGNGFERDVLTTYLSGKGKGIADLYIECLARAEAGT 193
                 57777777779999888888777.556689***************************998876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (195 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       419  (0.02337); expected 358.6 (0.02)
Passed bias filter:                      346  (0.0192983); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.41u 0.20s 00:00:00.61 Elapsed: 00:00:00.37
# Mc/sec: 1566.32
//
Query:       KOO23846.1  [L=370]
Description: hypothetical protein Ctob_000777 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
     0.0024   17.7   0.0      0.013   15.3   0.0    2.2  2  PDZ_6          PDZ domain
      0.004   17.5   0.0     0.0097   16.2   0.0    1.6  1  PDZ            PDZ domain
  ------ inclusion threshold ------
      0.095   12.8   3.8        2.2    8.3   2.0    2.3  2  Mito_fiss_reg  Mitochondrial fission regulator
        1.4    8.3   7.2       0.98    8.8   3.8    2.2  2  CAP_N          Adenylate cyclase associated (CAP) N terminal


Domain annotation for each model (and alignments):
>> PDZ_6  PDZ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.1      0.74   3.3e+03      35      48 ..      18      30 ..      15      34 .. 0.72
   2 !   15.3   0.0   2.9e-06     0.013      16      47 ..     211     242 ..     211     244 .. 0.92

  Alignments for each domain:
  == domain 1  score: -2.0 bits;  conditional E-value: 0.74
       PDZ_6 35 ladvaallrgsage 48
                +ad+a llr+++ +
  KOO23846.1 18 TADIAMLLRAAE-Q 30
                5799*****544.3 PP

  == domain 2  score: 15.3 bits;  conditional E-value: 2.9e-06
       PDZ_6  16 lrvGDiilsvNGqpveglsladvaallrgsag 47 
                 l+ GD++l++NG  ++ +s +++++++++ +g
  KOO23846.1 211 LCEGDLVLAINGLRTNTMSFEQLRSYVKECPG 242
                 679************************98765 PP

>> PDZ  PDZ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.0   2.2e-06    0.0097      40      80 ..     207     247 ..     182     248 .. 0.89

  Alignments for each domain:
  == domain 1  score: 16.2 bits;  conditional E-value: 2.2e-06
                 HHHTSSTTEEEEEETTEETTTSHHHHHHHHHHTTTSEEEEE CS
         PDZ  40 eadglkvGDkIlsvNgvdvenvsheeavqaikgskgkvtLt 80 
                 e+  l++GD +l++Ng  ++++s e+    +k++ g ++L+
  KOO23846.1 207 ERTRLCEGDLVLAINGLRTNTMSFEQLRSYVKECPGALHLE 247
                 44449*******************************99996 PP

>> Mito_fiss_reg  Mitochondrial fission regulator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.1   0.0    0.0094        42     134     208 ..      19     110 ..      17     142 .. 0.60
   2 ?    8.3   2.0   0.00049       2.2     166     209 ..     267     303 ..     241     332 .. 0.58

  Alignments for each domain:
  == domain 1  score: 4.1 bits;  conditional E-value: 0.0094
  Mito_fiss_reg 134 aQIAkIVaaqeasnssaslels..dtpdllepkss.saspsl..epsss..................lppppppppppippespsvldssnsaiel 206
                    a IA++  a+e++ + a+l  +   + ++l + ++ +a+++   +                      + p  p   pp+ p++ s +d++  ++e 
     KOO23846.1  19 ADIAMLLRAAEQHRKLAQLLPDedMRREMLAEADKqEAQAQAlmR---RgaagaggtwqdldaqrlsVGPQQP---PPPAPGVGSFVDRNGRVVEF 108
                    678999988888888444433322333333222220222222221...1223445556667766542225444...44455777777777777776 PP

  Mito_fiss_reg 207 ik 208
                    +k
     KOO23846.1 109 QK 110
                    65 PP

  == domain 2  score: 8.3 bits;  conditional E-value: 0.00049
  Mito_fiss_reg 166 ssaspslepssslppppppppppippespsvldssnsaielikq 209
                    s+++p++       ppppp ppp p+++ s+++s+++ +++  +
     KOO23846.1 267 SPPPPPM-----Y-PPPPPGPPP-PDGMYSGAMSEEELLQVAMH 303
                    2222212.....2.333333444.35666666666655554443 PP

>> CAP_N  Adenylate cyclase associated (CAP) N terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.1   0.1     0.097   4.4e+02     246     255 ..      84      93 ..      51     111 .. 0.65
   2 ?    8.8   3.8   0.00022      0.98     237     260 ..     264     288 ..     224     324 .. 0.53

  Alignments for each domain:
  == domain 1  score: 0.1 bits;  conditional E-value: 0.097
                 X....XXXXX CS
       CAP_N 246 gpppPpPpPp 255
                 gp+ PpPp p
  KOO23846.1  84 GPQQPPPPAP 93 
                 3333344333 PP

  == domain 2  score: 8.8 bits;  conditional E-value: 0.00022
                 C--XXXXXXX....XX.XXXXXX.. CS
       CAP_N 237 aaasaaaaggpppPpP.pPppasvf 260
                 ++as+++    ppPpP pPpp  + 
  KOO23846.1 264 PQASPPPPPMYPPPPPgPPPPDGMY 288
                 2222222223233344144444443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (370 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       628  (0.0350271); expected 358.6 (0.02)
Passed bias filter:                      385  (0.0214736); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.49u 0.22s 00:00:00.71 Elapsed: 00:00:00.39
# Mc/sec: 2855.97
//
Query:       KOO23847.1  [L=402]
Description: hypothetical protein Ctob_000770 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.5e-17   63.9   0.0    2.1e-17   63.4   0.0    1.2  1  DUF2358   Uncharacterized conserved protein (DUF2358)
    5.4e-06   27.0   0.0      1e-05   26.1   0.0    1.5  1  SnoaL_2   SnoaL-like domain


Domain annotation for each model (and alignments):
>> DUF2358  Uncharacterized conserved protein (DUF2358)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.4   0.0   2.3e-21   2.1e-17       2     113 .]      85     205 ..      84     205 .. 0.87

  Alignments for each domain:
  == domain 1  score: 63.4 bits;  conditional E-value: 2.3e-21
     DUF2358   2 rvveiLredlpklFekeqdysiYsedviFedpl.tkfkglerYkkilallrflgrlffadvklellkitqseeneikarWtlr.gip......rlpwkp 92 
                 r++ +Lr+d+p+lF+++ d+si++++++ +dp  ++  g ++Y++ + +lrfl+r  ++d+++ +  +  ++  +i++rW+ + ++       +     
  KOO23847.1  85 RAIDVLRHDYPRLFTERPDMSIFTDNIELHDPSgKRLAGKKQYERVFDALRFLRRTTMQDAQVGIRLVADDK--SIRVRWNAKlWMRdpatglT----- 176
                 57899****************************9*******************************9998877..*******9944444433331..... PP

     DUF2358  93 kl.........vfdGlselklnkdglivsH 113
                             +dG+s+++l+kdgli +H
  KOO23847.1 177 -TlvngepalvHIDGVSVYDLDKDGLIRQH 205
                 .13455556689****************99 PP

>> SnoaL_2  SnoaL-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.1   0.0   1.1e-09     1e-05      18     102 .]     105     205 ..      74     205 .. 0.76

  Alignments for each domain:
  == domain 1  score: 26.1 bits;  conditional E-value: 1.1e-09
                 HTEEEEEEEEET.TSEEESHHHHHHHHHHHHH....HEEEEEEEEEEE....EEETTEEEEEEEEEEE.........EETTSSEEEE.........EEE CS
     SnoaL_2  18 alfapdvvwedp.ggelrGreairaffralfa....afpdlrfeihdv....vadgdrvavewtvtgt.........ipatgrgvtv.........rgv 89 
                 ++f+++++++dp g +l G++++ + f al+     ++ d +     v    vad+  + v+w+++           +        v         +gv
  KOO23847.1 105 SIFTDNIELHDPsGKRLAGKKQYERVFDALRFlrrtTMQDAQ-----VgirlVADDKSIRVRWNAKLWmrdpatgltT-------LVngepalvhiDGV 191
                 89**********6666*********99999854444444444.....2445599999999999887557755555551.......33555555566*** PP

                 EEEEE.ETTEEEEE CS
     SnoaL_2  90 dvfrv.rdGkiveh 102
                 +v+++ +dG+i++h
  KOO23847.1 192 SVYDLdKDGLIRQH 205
                 *****99****986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (402 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       563  (0.0314016); expected 358.6 (0.02)
Passed bias filter:                      393  (0.0219198); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.46u 0.23s 00:00:00.69 Elapsed: 00:00:00.37
# Mc/sec: 3219.17
//
Query:       KOO23848.1  [L=400]
Description: hypothetical protein Ctob_000771 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    5.2e-35  119.6   4.7    9.5e-35  118.7   4.7    1.4  1  DUF2499      Protein of unknown function (DUF2499)
    6.5e-31  106.2   1.7    2.4e-30  104.4   1.7    2.0  1  DUF3593      Protein of unknown function (DUF3593)
  ------ inclusion threshold ------
        1.8    7.9   6.2       0.13   11.6   1.1    1.7  2  GpcrRhopsn4  Rhodopsin-like GPCR transmembrane domain


Domain annotation for each model (and alignments):
>> DUF2499  Protein of unknown function (DUF2499)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  118.7   4.7   1.6e-38   9.5e-35       1      88 [.     207     294 ..     207     295 .. 0.99

  Alignments for each domain:
  == domain 1  score: 118.7 bits;  conditional E-value: 1.6e-38
     DUF2499   1 aLSlptWiiHissvlEwllAilliwrygevsgrkelrvlalamlPalvsalcaltwHlfdnaeslellvtlqalltllGnltlllaal 88 
                 aLSlptW+iH+ssv+Ewl+A+ ++++y++++g++++r+l+++mlP ++s+++a+t+H+f+n++++++lv+lqa ltllGn t+++aal
  KOO23848.1 207 ALSLPTWAIHFSSVFEWLFAMSFVAQYAQATGNERWRWLTYGMLPLHASGVAACTYHFFYNSADVSFLVALQAGLTLLGNSTVCIAAL 294
                 79************************************************************************************96 PP

>> DUF3593  Protein of unknown function (DUF3593)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  104.4   1.7   3.9e-34   2.4e-30       2      87 ..      55     141 ..      54     142 .. 0.97

  Alignments for each domain:
  == domain 1  score: 104.4 bits;  conditional E-value: 3.9e-34
     DUF3593   2 ealfalsllpYllFLvllkkske.lpkltlvGfallLlFvavtipagivakevygesLanvDlLHGlaeslLtlsnllivlGfrral 87 
                  ++f++sllpY++FL++l   ++ +pk++l+Gf++lLlFv+ t+++giv+k+vyg+sLa+ D+LHG+ae+lLt snl ++ Gfr+al
  KOO23848.1  55 GTFFQASLLPYIGFLYFLGYAPNnTPKQALFGFQFLLLFVLSTVFTGIVTKSVYGASLADTDWLHGAAEALLTTSNLYVASGFRNAL 141
                 579***************999998************************************************************986 PP

>> GpcrRhopsn4  Rhodopsin-like GPCR transmembrane domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.3       0.6   3.6e+03     190     214 ..      73      95 ..      51     107 .. 0.54
   2 ?   11.6   1.1   2.2e-05      0.13      77     128 ..     257     307 ..     208     310 .. 0.69

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 0.6
  GpcrRhopsn4 190 lyglrntikkekskkkkqFllkfgi 214
                   y+ +nt k+       qFll f++
   KOO23848.1  73 GYAPNNTPKQ--ALFGFQFLLLFVL 95 
                  4444443321..1122344444443 PP

  == domain 2  score: 11.6 bits;  conditional E-value: 2.2e-05
  GpcrRhopsn4  77 lllllihlivYaynGigiellqilgeildilsqilfllLLlllakGWtitra 128
                  +++++ h+  Y++  + + ++  +g  l   s +  + LL+ l+ GWti++ 
   KOO23848.1 257 VAACTYHF-FYNSADVSFLVALQAGLTLLGNSTVCIAALLIALSNGWTISEL 307
                  44443333.35555555555555555555667777889***********975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (400 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       467  (0.0260472); expected 358.6 (0.02)
Passed bias filter:                      247  (0.0137766); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.44u 0.27s 00:00:00.71 Elapsed: 00:00:00.42
# Mc/sec: 2884.25
//
Query:       KOO23849.1  [L=198]
Description: hypothetical protein Ctob_000778 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    9.8e-21   74.0   2.3    1.2e-11   44.9   0.0    2.2  2  EF-hand_7     EF-hand domain pair
    2.2e-19   67.7   3.6    6.3e-06   25.7   0.0    4.4  4  EF-hand_6     EF-hand domain
    2.6e-19   67.2   3.3    4.1e-05   22.8   0.0    4.4  4  EF-hand_1     EF hand
    3.5e-17   61.0   3.1    2.5e-05   23.5   0.0    4.4  4  EF-hand_5     EF hand
    1.5e-10   40.8   4.0      0.049   13.5   0.3    4.3  4  EF-hand_8     EF-hand domain pair
  ------ inclusion threshold ------
      0.033   14.1   0.4         23    5.0   0.0    3.2  3  EF-hand_4     Cytoskeletal-regulatory complex EF hand
      0.038   14.3   0.3        8.3    6.8   0.0    3.2  3  SPARC_Ca_bdg  Secreted protein acidic and rich in cysteine Ca
       0.14   12.1   0.4        2.6    7.9   0.0    2.6  3  Caleosin      Caleosin related protein


Domain annotation for each model (and alignments):
>> EF-hand_7  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.9   0.5   5.3e-10   1.2e-06      12      70 ..       2      53 ..       1      54 [. 0.85
   2 !   44.9   0.0   5.2e-15   1.2e-11       3      69 ..     120     192 ..     118     194 .. 0.84

  Alignments for each domain:
  == domain 1  score: 28.9 bits;  conditional E-value: 5.3e-10
   EF-hand_7 12 DtdgdgyldkeellrllrkifqgagegsklsdeelellfkefDtdk..dGvisfdEFlkly 70
                D+dgdgy+d +e++ + +k     g ++++   e   lf+++D+ k  dG++ +dEF k +
  KOO23849.1  2 DSDGDGYVDINEFM-ATQK-----GGDDPM---EATMLFHMLDSQKksDGKLELDEFIKGM 53
                **************.9986.....666664...5688*****9988779********9977 PP

  == domain 2  score: 44.9 bits;  conditional E-value: 5.2e-15
   EF-hand_7   3 klkeaFkelDtdgdgyldkeellrllrkifqga...gegsklsd....eelellfkefDtdkdGvisfdEFlkl 69 
                 ++ e+F+++D+++dg+l+k+ell +lrk+ +     g ++++sd    ++ e+ f+++Dtd++ +is++E+  +
  KOO23849.1 120 RVTEVFNLIDKNQDGRLSKAELLIALRKNESVRaalG-MDNVSDgegkDKFEAAFQKMDTDGSASISMSELNSY 192
                 66799**********************998888**63.444455455577********************9866 PP

>> EF-hand_6  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   0.1   9.3e-06     0.021       9      24 ..       1      16 [.       1      21 [. 0.91
   2 !    9.8   0.1   0.00035      0.79       5      31 .]      30      57 ..      26      57 .. 0.87
   3 !   25.7   0.0   2.8e-09   6.3e-06       4      28 ..     123     147 ..     120     158 .. 0.86
   4 !   15.4   0.0   5.7e-06     0.013       1      26 [.     168     193 ..     168     195 .. 0.92

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 9.3e-06
   EF-hand_6  9 fDkdgdGkidaeElrk 24
                +D dgdG++d++E+++
  KOO23849.1  1 MDSDGDGYVDINEFMA 16
                6*************87 PP

  == domain 2  score: 9.8 bits;  conditional E-value: 0.00035
   EF-hand_6  5 aFklfDkd..gdGkidaeElrkalrkalg 31
                +F+++D     dGk+  +E++k +  +lg
  KOO23849.1 30 LFHMLDSQkkSDGKLELDEFIKGMA-LLG 57
                79999988899***********998.665 PP

  == domain 3  score: 25.7 bits;  conditional E-value: 2.8e-09
   EF-hand_6   4 eaFklfDkdgdGkidaeElrkalrk 28 
                 e+F+l+Dk+ dG ++++El  alrk
  KOO23849.1 123 EVFNLIDKNQDGRLSKAELLIALRK 147
                 89**********************7 PP

  == domain 4  score: 15.4 bits;  conditional E-value: 5.7e-06
   EF-hand_6   1 elreaFklfDkdgdGkidaeElrkal 26 
                 ++++aF+++D+dg+ +i+++El + l
  KOO23849.1 168 KFEAAFQKMDTDGSASISMSELNSYL 193
                 5899******************9877 PP

>> EF-hand_1  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   0.2   1.5e-06    0.0033       9      24 ..       1      16 [.       1      19 [. 0.92
   2 !    9.8   0.1   0.00028      0.62      12      28 ..      39      55 ..      30      56 .. 0.89
   3 !   22.8   0.0   1.8e-08   4.1e-05       3      28 ..     122     147 ..     120     148 .. 0.92
   4 !   15.6   0.0   3.8e-06    0.0086       2      26 ..     169     193 ..     168     195 .. 0.90

  Alignments for each domain:
  == domain 1  score: 16.9 bits;  conditional E-value: 1.5e-06
                HTTTSSSEEEHHHHHH CS
   EF-hand_1  9 fDkDgdGkIdfeEfke 24
                +D DgdG++d++Ef++
  KOO23849.1  1 MDSDGDGYVDINEFMA 16
                7*************86 PP

  == domain 2  score: 9.8 bits;  conditional E-value: 0.00028
                TSSSEEEHHHHHHHHHH CS
   EF-hand_1 12 DgdGkIdfeEfkellkk 28
                  dGk++++Ef++ ++ 
  KOO23849.1 39 KSDGKLELDEFIKGMAL 55
                67***********9975 PP

  == domain 3  score: 22.8 bits;  conditional E-value: 1.8e-08
                 HHHHHHHTTTSSSEEEHHHHHHHHHH CS
   EF-hand_1   3 keiFrefDkDgdGkIdfeEfkellkk 28 
                  e+F+++Dk++dG++++ E++ +l+k
  KOO23849.1 122 TEVFNLIDKNQDGRLSKAELLIALRK 147
                 699******************99987 PP

  == domain 4  score: 15.6 bits;  conditional E-value: 3.8e-06
                 HHHHHHHHTTTSSSEEEHHHHHHHH CS
   EF-hand_1   2 lkeiFrefDkDgdGkIdfeEfkell 26 
                 ++ +F+++D+Dg+  I+ +E+ ++l
  KOO23849.1 169 FEAAFQKMDTDGSASISMSELNSYL 193
                 899*****************98876 PP

>> EF-hand_5  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.8   0.1   1.3e-05     0.029       8      22 ..       1      15 [.       1      17 [. 0.93
   2 ?    4.6   0.1     0.011        25      12      23 ..      40      51 ..      38      54 .. 0.83
   3 !   23.5   0.0   1.1e-08   2.5e-05       4      21 ..     124     141 ..     121     146 .. 0.92
   4 !   16.5   0.0   1.9e-06    0.0043       2      22 ..     170     190 ..     169     194 .. 0.89

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 1.3e-05
                H-SS-SSCE-HHHHH CS
   EF-hand_5  8 iDlNgDGkIskeELk 22
                +D +gDG++++ E++
  KOO23849.1  1 MDSDGDGYVDINEFM 15
                7*************7 PP

  == domain 2  score: 4.6 bits;  conditional E-value: 0.011
                -SSCE-HHHHHH CS
   EF-hand_5 12 gDGkIskeELkt 23
                 DGk+  +E+ +
  KOO23849.1 40 SDGKLELDEFIK 51
                5*********65 PP

  == domain 3  score: 23.5 bits;  conditional E-value: 1.1e-08
                 HHHHH-SS-SSCE-HHHH CS
   EF-hand_5   4 tFqaiDlNgDGkIskeEL 21 
                 +F+ iD+N+DG++sk EL
  KOO23849.1 124 VFNLIDKNQDGRLSKAEL 141
                 8****************9 PP

  == domain 4  score: 16.5 bits;  conditional E-value: 1.9e-06
                 HHHHHHH-SS-SSCE-HHHHH CS
   EF-hand_5   2 kdtFqaiDlNgDGkIskeELk 22 
                 +++Fq++D++g+  Is++EL 
  KOO23849.1 170 EAAFQKMDTDGSASISMSELN 190
                 689****************97 PP

>> EF-hand_8  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.5   0.3   2.2e-05     0.049      35      50 ..       1      16 [.       1      19 [. 0.93
   2 !    5.0   0.0    0.0096        21      39      53 ..      40      54 ..      24      56 .. 0.81
   3 !   11.2   0.0   0.00011      0.25      28      52 ..     121     145 ..     120     148 .. 0.86
   4 !    9.6   0.1   0.00035      0.77      22      47 ..     163     188 ..     149     194 .. 0.78

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 2.2e-05
   EF-hand_8 35 fDtdgdGkisfeEFcv 50
                +D dgdG+++ +EF++
  KOO23849.1  1 MDSDGDGYVDINEFMA 16
                8*************96 PP

  == domain 2  score: 5.0 bits;  conditional E-value: 0.0096
   EF-hand_8 39 gdGkisfeEFcvlle 53
                 dGk+ ++EF+  ++
  KOO23849.1 40 SDGKLELDEFIKGMA 54
                49********99886 PP

  == domain 3  score: 11.2 bits;  conditional E-value: 0.00011
   EF-hand_8  28 vdilfrefDtdgdGkisfeEFcvll 52 
                 v+++f+++D ++dG++s+ E +  l
  KOO23849.1 121 VTEVFNLIDKNQDGRLSKAELLIAL 145
                 6789****************87655 PP

  == domain 4  score: 9.6 bits;  conditional E-value: 0.00035
   EF-hand_8  22 glseeevdilfrefDtdgdGkisfeE 47 
                 g +++++++ f ++Dtdg+  is  E
  KOO23849.1 163 GEGKDKFEAAFQKMDTDGSASISMSE 188
                 56899*************99998777 PP

>> EF-hand_4  Cytoskeletal-regulatory complex EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.2   0.1     0.078   1.7e+02      53      68 ..       2      17 ..       1      26 [. 0.88
   2 ?    3.5   0.0      0.03        67      55      72 ..      39      56 ..      25      76 .. 0.83
   3 ?    5.0   0.0      0.01        23      42      70 ..     118     146 ..      94     151 .. 0.84

  Alignments for each domain:
  == domain 1  score: 2.2 bits;  conditional E-value: 0.078
   EF-hand_4 53 didedgkldfeefcia 68
                d d dg +d +ef+ +
  KOO23849.1  2 DSDGDGYVDINEFMAT 17
                7899*********876 PP

  == domain 2  score: 3.5 bits;  conditional E-value: 0.03
   EF-hand_4 55 dedgkldfeefciamrli 72
                 +dgkl+++ef+  m l+
  KOO23849.1 39 KSDGKLELDEFIKGMALL 56
                68*********9999875 PP

  == domain 3  score: 5.0 bits;  conditional E-value: 0.01
   EF-hand_4  42 edklekiwdladidedgkldfeefciamr 70 
                 + +++++++l d ++dg+l   e+ ia+r
  KOO23849.1 118 DPRVTEVFNLIDKNQDGRLSKAELLIALR 146
                 557889********************998 PP

>> SPARC_Ca_bdg  Secreted protein acidic and rich in cysteine Ca binding region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.0   0.1      0.22     5e+02      64     110 ..       2      49 ..       1      52 [. 0.50
   2 ?    6.8   0.0    0.0037       8.3      56      76 ..     121     141 ..      63     152 .. 0.82
   3 ?    3.2   0.0     0.048   1.1e+02      53      78 ..     166     191 ..     145     196 .. 0.82

  Alignments for each domain:
  == domain 1  score: 1.0 bits;  conditional E-value: 0.22
  SPARC_Ca_bdg  64 DtnsdkvlsksELaplrap.lvklehCikpflescDadkdkkislkEw 110
                   D + d++++ +E  + ++   +++e  +   +     ++d+k++l E+
    KOO23849.1   2 DSDGDGYVDINEFMATQKGgDDPMEATMLFHMLDSQKKSDGKLELDEF 49 
                   556666666666555544213455554444444444455666666666 PP

  == domain 2  score: 6.8 bits;  conditional E-value: 0.0037
  SPARC_Ca_bdg  56 vawkFsklDtnsdkvlsksEL 76 
                   v+  F+ +D+n+d+ lsk+EL
    KOO23849.1 121 VTEVFNLIDKNQDGRLSKAEL 141
                   444577788888888888887 PP

  == domain 3  score: 3.2 bits;  conditional E-value: 0.048
  SPARC_Ca_bdg  53 kepvawkFsklDtnsdkvlsksELap 78 
                   k++ +  F+k+Dt+   ++s sEL++
    KOO23849.1 166 KDKFEAAFQKMDTDGSASISMSELNS 191
                   566677899*****99999*999986 PP

>> Caleosin  Caleosin related protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.0       2.8   6.2e+03      15      33 ..      38      56 ..      24      62 .. 0.61
   2 ?    1.4   0.0      0.12   2.6e+02      96     130 ..     122     156 ..     116     162 .. 0.80
   3 ?    7.9   0.0    0.0012       2.6      92     120 ..     166     194 ..     158     197 .. 0.90

  Alignments for each domain:
  == domain 1  score: -3.0 bits;  conditional E-value: 2.8
    Caleosin 15 rdkdGiiypldtyrgfral 33
                + +dG + + + ++g+  l
  KOO23849.1 38 KKSDGKLELDEFIKGMALL 56
                3445555555555555555 PP

  == domain 2  score: 1.4 bits;  conditional E-value: 0.12
    Caleosin  96 eeifskyakekkdaltlkevlellkgqrealDlfg 130
                  e+f+  +k++++ l+  e+l  l++++ +   +g
  KOO23849.1 122 TEVFNLIDKNQDGRLSKAELLIALRKNESVRAALG 156
                 67889999999999999999999999888776666 PP

  == domain 3  score: 7.9 bits;  conditional E-value: 0.0012
    Caleosin  92 pqkfeeifskyakekkdaltlkevlellk 120
                 ++kfe+ f+k +++ + +++++e++++l 
  KOO23849.1 166 KDKFEAAFQKMDTDGSASISMSELNSYLA 194
                 589*********************98876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (198 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       482  (0.0268838); expected 358.6 (0.02)
Passed bias filter:                      426  (0.0237604); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.39u 0.26s 00:00:00.65 Elapsed: 00:00:00.38
# Mc/sec: 1556.34
//
Query:       KOO23850.1  [L=637]
Description: domain containing protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.2e-31  110.4   0.0    3.4e-31  108.9   0.0    1.7  2  RhoGEF    RhoGEF domain


Domain annotation for each model (and alignments):
>> RhoGEF  RhoGEF domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  108.9   0.0   1.9e-35   3.4e-31       1     182 []      51     265 ..      51     265 .. 0.90
   2 ?   -2.0   0.1       0.2   3.6e+03      94     126 ..     555     586 ..     539     597 .. 0.61

  Alignments for each domain:
  == domain 1  score: 108.9 bits;  conditional E-value: 1.9e-35
                 HHHHHHHHHHHHHHHHHHHHHHTHCCCHHCTCCHHHHHHHHCTTHHHHHHHHHHHH..HHHHHHHH................................. CS
      RhoGEF   1 vikElleTErsYvrdLkvlvevylkplselevlseeeikiiFsnieeilelhrsfl..leeLeerl................................. 64 
                 vi+El+ TE +++rd++  v+++  pl+e  +l++++ + iFsn+ +ilelh +++  l+e e+r                                  
  KOO23850.1  51 VIEELIRTESTFLRDMRFTVRNFALPLRE--LLDAAQARAIFSNLAQILELHARLVsaLPEPEARTnlptssaarfsshatslgsrtsggddgcggvcg 147
                 79*************************95..7********************55446655555555999999*********999999999999888887 PP

                 .....HHHTTSS-S-SHHHHHHHHSTHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHTSGGGTT--HHHHTTHHHHHHHHHHHHHHHHHHTS-T CS
      RhoGEF  65 ....keseeqkeaqsigdvflkfadkfkkYseYcsnypnalkllkelskknkkfkafleeaeerpecskldLeslLikPvqRlprYpLLLkellkntpe 159
                     ++s+   +aq +++ f k+++ fk Y++Yc nyp++   l +  +++ ++++fle +e    +++++L+ lL +PvqRl+ YpLLL++ lk+ p+
  KOO23850.1 148 ahgtSSSSVAAKAQIVASAFVKLQPFFKCYTSYCGNYPYVSGALLKA-RSSLRVSSFLEGMEL---THSISLQALLFRPVQRLCAYPLLLQRALKHVPQ 242
                 765436777788899**************************999995.58889999***9664...489****************************** PP

                 TSHHHHHHHHHHHHHHHHHHHHH CS
      RhoGEF 160 shpdyealkkaleaikevaseiN 182
                  h  +  +++a++ ++++++++N
  KOO23850.1 243 AHRLHAPVEEAFSVMQQMVTQVN 265
                 *********************99 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 0.2
                 HHCHHHHHHHHHHHHHHHHHHHHHHHHHHTSGG CS
      RhoGEF  94 csnypnalkllkelskknkkfkafleeaeerpe 126
                 cs+  +++++++e s +++ +k++++e+++++ 
  KOO23850.1 555 CSRSASMKSVISECS-RSASMKSVINECSRSAS 586
                 555555555666633.66666666666665544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (637 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       889  (0.0495845); expected 358.6 (0.02)
Passed bias filter:                      576  (0.0321267); expected 358.6 (0.02)
Passed Vit filter:                        48  (0.00267723); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.62u 0.29s 00:00:00.90 Elapsed: 00:00:00.44
# Mc/sec: 4321.89
//
Query:       KOO23851.1  [L=218]
Description: hypothetical protein Ctob_003469 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (218 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       360  (0.0200792); expected 358.6 (0.02)
Passed bias filter:                      289  (0.0161191); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.39u 0.24s 00:00:00.63 Elapsed: 00:00:00.39
# Mc/sec: 1672.69
//
Query:       KOO23852.1  [L=874]
Description: hypothetical protein Ctob_003468 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.9e-05   25.1   0.1    0.00069   20.0   0.0    2.8  2  AAA_17    AAA domain
     0.0019   18.4   0.0      0.038   14.1   0.0    2.6  3  ADK       Adenylate kinase
  ------ inclusion threshold ------
      0.068   13.3   5.4      0.077   13.2   0.2    3.4  3  AAA_33    AAA domain
       0.14   12.7   0.0       0.31   11.6   0.0    1.6  1  AAA_18    AAA domain


Domain annotation for each model (and alignments):
>> AAA_17  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.0   0.0   1.5e-07   0.00069       1     121 [.      81     205 ..      81     213 .. 0.59
   2 ?    1.4   0.0     0.092   4.1e+02      12      35 ..     663     686 ..     661     701 .. 0.88

  Alignments for each domain:
  == domain 1  score: 20.0 bits;  conditional E-value: 1.5e-07
                 EE-TTSSHHHHHHHHHHHHTEEEEEHHHHHHHHHHTTTS.HSSHHHHCTSHHHHHHHHHHHHHHHH...........HHHHHSSEEEEEE-SEEEETTE CS
      AAA_17   1 lGgPGsGKgtqceklvekygfthlsaGdllreeakrggl.akardemrklpleekkelqkeaaeki...........aeeakkkgvlvdghprikeqag 87 
                 +G+P sGK+  +e l  ++g++h s G ll +  + +g  a  r+ ++++p   +  +q+ a e +           a +++++ +l+   p       
  KOO23852.1  81 IGPPCSGKSVHAEVLSAQLGVQHASLGTLLQDSSAARGYgAAVRGGLADAPVLTDALVQRAASE-LppggvlemllrAAASADDRLLLLECPA---HGS 175
                 69*****************************766666652556666766666666555554443.2222222222211111233333333332...233 PP

                 EEESSHHHHHHHH..SEEEEEE--HHHHHHHHHH CS
      AAA_17  88 fldglpkevleelkpdaiilleadpeeilerrlk 121
                 +l++l    l  ++p +i+l++a +  +l+r+++
  KOO23852.1 176 LLPQL----LMRIEPVLILLVDATDRACLRRMQR 205
                 33333....3467777777777777766655544 PP

  == domain 2  score: 1.4 bits;  conditional E-value: 0.092
                 HHHHHHHHTEEEEEHHHHHHHHHH CS
      AAA_17  12 ceklvekygfthlsaGdllreeak 35 
                 c +l+ek+g  h+   +llre  +
  KOO23852.1 663 CMRLAEKLGSAHVALPSLLREQLA 686
                 899*****************9764 PP

>> ADK  Adenylate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.1   0.0   8.4e-06     0.038       1      46 [.      80     124 ..      80     144 .. 0.78
   2 ?    0.7   0.0      0.11     5e+02      12      37 ..     662     687 ..     648     699 .. 0.83
   3 ?   -2.8   0.0       1.4   6.2e+03      40      70 ..     710     740 ..     707     745 .. 0.85

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 8.4e-06
                 EEESTTSSHHHHHHHHHHHHTSEEEEHHHHHHHHHHCT-HHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
         ADK   1 llGaPgaGKGtqaeklvkkyglahlstGdllRaevksgtelGkeak 46 
                 l+G+P +GK   ae l  ++g++h s G ll ++ ++   +G  ++
  KOO23852.1  80 LIGPPCSGKSVHAEVLSAQLGVQHASLGTLLQDSSAAR-GYGAAVR 124
                 79*****************************9876553.4555555 PP

  == domain 2  score: 0.7 bits;  conditional E-value: 0.11
                 HHHHHHHHHTSEEEEHHHHHHHHHHC CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxx RF
         ADK  12 qaeklvkkyglahlstGdllRaevks 37 
                  + +l++k+g ah++   llR+++++
  KOO23852.1 662 FCMRLAEKLGSAHVALPSLLREQLAA 687
                 5899******************9876 PP

  == domain 3  score: -2.8 bits;  conditional E-value: 1.4
                 HHHHHHHHHHHTTSS--HHHHHHHHHHHHHC CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
         ADK  40 elGkeakevmdkgelvpdevvvklvkeelek 70 
                 e G +++e +  g+l++ + +++ v+ ++++
  KOO23852.1 710 ERGATISEGLRTGKLLSADSTLRAVQTAIHA 740
                 6789999999999**9999999999988875 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.7       1.1     5e+03      86     138 ..      29      72 ..      16      75 .. 0.58
   2 ?   13.2   0.2   1.7e-05     0.077       1      35 [.      77     111 ..      77     228 .. 0.64
   3 ?   -0.3   0.0      0.25   1.1e+03      15      79 ..     662     731 ..     660     743 .. 0.66

  Alignments for each domain:
  == domain 1  score: -2.5 bits;  conditional E-value: 1.1
      AAA_33  86 arflklarrlgvpvrivvvetdeetlkeRlakRaangddrsevpeealdrqka 138
                 +  l++a+    + +   v++d ++ ++R a R+a      + ++++l rq++
  KOO23852.1  29 RLCLQFAE----EATSFKVSADISLQQARAASRSAM-----RREMAVLRRQLE 72 
                 55555555....233344555666666666666664.....446666666655 PP

  == domain 2  score: 13.2 bits;  conditional E-value: 1.7e-05
      AAA_33   1 lvllvGlpGsGKstlaerllkklgavllssdtlrr 35 
                 ++ll+G+p+sGKs  ae l ++lg+++ s  tl++
  KOO23852.1  77 VLLLIGPPCSGKSVHAEVLSAQLGVQHASLGTLLQ 111
                 789*********************55544444333 PP

  == domain 3  score: -0.3 bits;  conditional E-value: 0.25
      AAA_33  15 laerllkklgavllssdtlrr.rlfgtdqqskt.....dytrvldrlyqilnelarkalsagrnvildatn 79 
                 +  rl++klg  +++ ++l+r +l++ +++s +     +++  ++ + ++  +++ + l+ g+ + +d+t+
  KOO23852.1 662 FCMRLAEKLGSAHVALPSLLReQLAALHKTSAScqlsrQLPGSTHPVDERG-ATISEGLRTGKLLSADSTL 731
                 567999***********9888788887776665433322222334455553.6666666666666666665 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   6.9e-05      0.31       2      25 ..      79     107 ..      78     207 .. 0.85

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 6.9e-05
      AAA_18   2 lltGtpGvGKttlakeLskrlgf.....g 25 
                 ll G+p++GK+  a+ Ls  lg+     g
  KOO23852.1  79 LLIGPPCSGKSVHAEVLSAQLGVqhaslG 107
                 689****************9977644333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (874 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       498  (0.0277762); expected 358.6 (0.02)
Passed bias filter:                      279  (0.0155614); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.68u 0.26s 00:00:00.94 Elapsed: 00:00:00.41
# Mc/sec: 6455.48
//
Query:       KOO23853.1  [L=435]
Description: hypothetical protein Ctob_003465 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.4e-15   55.7   0.0    2.5e-14   53.7   0.0    1.8  1  O-FucT    GDP-fucose protein O-fucosyltransferase


Domain annotation for each model (and alignments):
>> O-FucT  GDP-fucose protein O-fucosyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.7   0.0   1.4e-18   2.5e-14       1     333 [.      42     396 ..      42     398 .. 0.69

  Alignments for each domain:
  == domain 1  score: 53.7 bits;  conditional E-value: 1.4e-18
      O-FucT   1 YllynpaeGgfNnqrdvilrmvavarllnaTLVlPpw....dqlshwrdss........kqnrlpFsdfFd....iesLkkdvrviemeeflkelppel 83 
                 +ll++ + G f+     + + +a+a lln+T VlP++    d      ++         ++ ++pF++fFd    i++L+  vrv+      ++lp  l
  KOO23853.1  42 FLLFELDRG-FGAAHLGLFNGIALAWLLNVTAVLPRIhtyhD-----LETGlrradagaSSAFVPFETFFDaeafISALSPMVRVV------RRLPAAL 128
                 688888999.99999*********************955431.....3333444457999**************************......****777 PP

      O-FucT  84 wsaekr.....ksvckeakpsyylkeilpllkkkkvvqlakf.......................qklrCrskqgnpfglwdnfevsfe.......ael 147
                  +  ++     +  ++  +                                                        + + lwd++++++           
  KOO23853.1 129 DELADHevtqpV--AFINP----------------------AvptqmpgaasngragaggapastG--GLALLPTDLQRLWDHYKTHNVlrvrslaR-- 199
                 776444454221..11111......................1222222223333444455555442..3332333455599***7444455533321.. PP

      O-FucT 148 vlhdefge.eWkarv.........daLrFskeieelaaklvkrll..ekrkakggpylalHLRrekDflaaCehgggee....ellaspre........ 222
                        +  W++            a+r +  i +laa l +++l   +rk+ +g ++++HL  ++ +   C+++  +     +               
  KOO23853.1 200 -------KlVWSTPAlahlrlllhAAIRPAAAIDRLAAHLEREMLafGERKNLSGSFVSMHLPLGSGWEEFCRQERLSTlgdgH------Samfggasg 285
                 .......1344444455555678889*******************99568899*****************99875444334330......244445555 PP

      O-FucT 223 .s...rreegk.ltpeecvpsleeialqlkgllkel....kltsvfvAtdeiyggeelkelkkefpnlvkvtkeklaskeelekfkdgsvaaiDqiics 312
                  s   r+ +g+ +  e +    +  a+++ ++l+e       + ++vA+  + + + +++l+k+   ++  ++     ++    +++   +a+D++ c 
  KOO23853.1 286 aSargRHAAGSdVDDESDWRRCDLSAEAVTQVLEERqvgdLSRLLYVAGTLNIS-H-IQQLHKQRFAVM--SRAR--FTV---DIHPDLAPAVDMALCR 375
                 625677777778888888888888888888888887444345789***997775.4.888876654433..2222..222...34566667******** PP

      O-FucT 313 rsdvFigtyeStfsafvkreR 333
                 r+  Fig+ +S+fs+++ + R
  KOO23853.1 376 RAPLFIGNAFSSFSFVLREAR 396
                 ***************999988 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (435 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       261  (0.0145574); expected 358.6 (0.02)
Passed bias filter:                      210  (0.0117129); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.26s 00:00:00.68 Elapsed: 00:00:00.37
# Mc/sec: 3550.85
//
Query:       KOO23854.1  [L=484]
Description: major facilitator superfamily [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.9e-70  237.6   9.4    9.5e-55  185.9   1.6    2.1  2  MFS_5     Sugar-tranasporters, 12 TM
    4.6e-18   65.3  21.1    5.4e-18   65.0  20.3    1.4  1  MFS_1     Major Facilitator Superfamily


Domain annotation for each model (and alignments):
>> MFS_5  Sugar-tranasporters, 12 TM
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  185.9   1.6   1.1e-58   9.5e-55      20     224 ..      15     218 ..       7     226 .. 0.92
   2 !   56.2   1.2   2.9e-19   2.6e-15     237     331 ..     281     379 ..     263     398 .. 0.84

  Alignments for each domain:
  == domain 1  score: 185.9 bits;  conditional E-value: 1.1e-58
       MFS_5  20 ksskdrvaddpkfkafkrtyllvyslavagdwlqgpyvyalyesygldkg...dieilfiagfgssllfgtivgsladkfgrkracltyailyilacit 115
                 k++ ++ a+   f +f+r+yl vy++++  dw+qg ++y+ly+sy  + g    ++ lf +gf ++ +fgt  g + d++grkracl+y  l  +    
  KOO23854.1  15 KTTVTNQAKAADFASFQRSYLSVYVIIMLADWMQGTHMYTLYSSYAKEEGsnvAVGTLFFTGFVAAAVFGTPTGPFVDRYGRKRACLVYIALELTINFL 113
                 556778889999*********************************99776222699*************************************999*** PP

       MFS_5 116 khsgeykvlmigrvlggiatsllysafeswlvaehnkrgfddsllsivfskaiflgnslvaiiaglaanllaerlgfgpvapfdlalsvlligaviils 214
                  h++++ +l++grvlggi+tsll+safe+w+v eh  rgf +++++ +f+  + + n+  ai+ag++a++ a+  g   + pf+la+++ +++  + ++
  KOO23854.1 114 EHFNHMGLLLVGRVLGGISTSLLFSAFEAWMVTEHRIRGFPEEWIGRTFALCA-VWNGATAIVAGVLAQISADIRGD--IGPFQLAMALTALA-GLNIT 208
                 **************************************************999.99*****************9987..*******9987765.66779 PP

       MFS_5 215 swsenygdts 224
                 sw+enyg t 
  KOO23854.1 209 SWTENYGSTG 218
                 9******986 PP

  == domain 2  score: 56.2 bits;  conditional E-value: 2.9e-19
       MFS_5 237 akaiaedekvallglvqslfegsmytfvllwtpals....andeeip.hgyifaafmlasmlgssvaskllarklkvesymrivlllaavtlslpvvan 330
                    ++ d  ++++g+v +lfeg+mytfv++w p+l+      d+  p  g if+++m a  +g  v+  l ar l ve+   +++ll+ v++ +pvv+ 
  KOO23854.1 281 WLVVRGDSALLVVGAVYALFEGAMYTFVFNWVPTLAsalgGYDKIAPvQGLIFSCLMAAISIGGEVY-GLAARFLAVETIGVLIFLLSFVCMAVPVVCG 378
                 456899***************************9986653345555557******************.9****************************95 PP

       MFS_5 331 f 331
                 +
  KOO23854.1 379 L 379
                 4 PP

>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.0  20.3     6e-22   5.4e-18       3     342 ..      39     430 ..      33     442 .. 0.73

  Alignments for each domain:
  == domain 1  score: 65.0 bits;  conditional E-value: 6e-22
       MFS_1   3 laaflsalarsilgpalpl.alaedlgispseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllll.fasslwlllvlrvlqGlga 99 
                 ++++l+ ++ ++ + +l + + +e+   s  ++g+l+ + +++aav+  p+G+++dr+Gr+r  l+ ++l +    +l  f +++ lllv+rvl G+ +
  KOO23854.1  39 VIIMLADWMQGTHMYTLYSsYAKEE--GSNVAVGTLFFTGFVAAAVFGTPTGPFVDRYGRKRACLVYIALELTI-NFLEhF-NHMGLLLVGRVLGGIST 133
                 4566666777777777777455555..59999******************************999999999999.333368.9999************* PP

       MFS_1 100 galfpagaaliadw.....fpkeergraigllsagfslGailgpllggllasslgWravfyilaivsllafvlfllll..................... 172
                 ++lf+a  a+++       fp+e  gr ++l ++ +++ ai++ +l+ + a+  g  ++f ++ ++++la++ +  +                      
  KOO23854.1 134 SLLFSAFEAWMVTEhrirgFPEEWIGRTFALCAVWNGATAIVAGVLAQISADIRGDIGPFQLAMALTALAGLNITSWTenygstggdhgdgnsggdsst 232
                 *********9985434444************************************99**************9766777788888887777777777777 PP

       MFS_1 173 ...................peepperkrkspkeee...kgtgpaplvp......awkallkdpvlw..illialllfffgfsglltllplylqevlgls 241
                                    ++++++++ ++++e     ++       +      aw  ++ d  l+   +++al+ + +++++++ ++p+++    g++
  KOO23854.1 233 naggtagpngvvhrstertTVDDHAKGAVASAESAesaES-------SeaglwaAWLVVRGDSALLvvGAVYALFEG-AMYTFVFNWVPTLASALGGYD 323
                 7766666666655555555444444444444444233333.......13555667********99654444444444.47888*******877777777 PP

       MFS_1 242 ..glllaglllallalvgail...allagrlsdrlgrrrrlllallllllaalglallavt.......ssavllllvlvl.iGfglgfvfpsllalasd 327
                   + +++++++ l+a++++++   +l a +l+         ++++l++ll+++++a+  v+       + ++ ++++ +l + +++g ++p++++  s+
  KOO23854.1 324 kiAPVQGLIFSCLMAAISIGGevyGLAARFLA-------VETIGVLIFLLSFVCMAVPVVCglygcgiHASFGVHFAAFLgFEMCVGAFQPCVATHRSK 415
                 99557777666666666666622233333333.......445666666666666666666644466554444444444445999*************** PP

       MFS_1 328 lappeeagtasglfn 342
                 ++p  ++ t++ lf 
  KOO23854.1 416 YVPDAQQSTVNNLFR 430
                 ****99999998876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (484 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       665  (0.0370907); expected 358.6 (0.02)
Passed bias filter:                      335  (0.0186848); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.53u 0.26s 00:00:00.79 Elapsed: 00:00:00.42
# Mc/sec: 3490.61
//
Query:       KOO23855.1  [L=514]
Description: mercuric reductase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    5.9e-53  180.0   3.2    8.4e-53  179.5   3.2    1.2  1  Pyr_redox_2    Pyridine nucleotide-disulphide oxidoreductase
    1.3e-23   83.4   0.1    2.5e-23   82.4   0.1    1.5  1  Pyr_redox_dim  Pyridine nucleotide-disulphide oxidoreductase,
    4.8e-16   59.1   4.2    2.9e-12   47.0   0.2    3.0  2  Pyr_redox      Pyridine nucleotide-disulphide oxidoreductase
    6.1e-09   35.4  15.3     0.0001   21.5   5.3    3.4  3  GIDA           Glucose inhibited division protein A
    3.8e-08   33.1   0.8    3.8e-08   33.1   0.8    2.3  2  FAD_oxidored   FAD dependent oxidoreductase
    1.9e-07   31.0  14.8      0.002   17.8   2.4    4.0  4  DAO            FAD dependent oxidoreductase
    3.1e-07   30.5   5.5    0.00033   20.8   1.6    2.9  2  NAD_binding_8  NAD(P)-binding Rossmann-like domain
    8.4e-07   28.5   0.2       0.01   15.1   0.0    2.4  2  Pyr_redox_3    Pyridine nucleotide-disulphide oxidoreductase
      5e-06   25.9  18.8    1.6e-05   24.2   3.5    4.2  3  FAD_binding_2  FAD binding domain
    4.6e-05   22.6   8.3      0.023   13.8   0.2    3.1  3  Lycopene_cycl  Lycopene cyclase protein
    0.00096   18.0  11.4      0.001   17.9   1.0    3.1  3  HI0933_like    HI0933-like protein
     0.0011   18.4   5.8      0.068   12.4   0.6    2.4  2  FAD_binding_3  FAD binding domain
     0.0024   17.2   7.2      0.098   11.9   0.5    2.6  2  AlaDh_PNT_C    Alanine dehydrogenase/PNT, C-terminal domain
     0.0039   17.6   1.9      0.023   15.2   0.2    2.3  2  NAD_binding_7  Putative NAD(P)-binding
     0.0041   16.4   4.4     0.0084   15.4   0.7    2.3  2  Thi4           Thi4 family
  ------ inclusion threshold ------
      0.016   15.4   1.0       0.22   11.8   0.1    2.7  2  TrkA_N         TrkA-N domain
      0.017   14.3   0.6        0.1   11.7   0.0    2.2  3  K_oxygenase    L-lysine 6-monooxygenase (NADPH-requiring)
      0.054   14.0   0.3          1    9.9   0.1    2.5  2  XdhC_C         XdhC Rossmann domain
        3.9    8.1  13.0        2.4    8.8   0.1    3.8  3  F420_oxidored  NADP oxidoreductase coenzyme F420-dependent
        5.2    6.9   6.1         25    4.6   0.0    3.1  3  DFP            DNA / pantothenate metabolism flavoprotein
        6.2    6.7  11.7        1.7    8.5   0.1    3.2  3  3HCDH_N        3-hydroxyacyl-CoA dehydrogenase, NAD binding d


Domain annotation for each model (and alignments):
>> Pyr_redox_2  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  179.5   3.2   9.8e-56   8.4e-53       2     294 .]      23     351 ..      22     351 .. 0.85

  Alignments for each domain:
  == domain 1  score: 179.5 bits;  conditional E-value: 9.8e-56
                  SEEEE--SHHHHHHHHHHHHHTS-EEEEE....TTHCHHHCSHHHHCHHHHHHHHHHHHH...................................... CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxx....xxxxxxxxxxxxxxxxxxxxxxxxxxx...................................... RF
  Pyr_redox_2   2 dvvviGgGpAGlaaaltlaqagakvtlve....legtclnggcllskallgvaedaeias...................................... 57 
                  d++viG+G AG+ aa+ +a  g  v+l+e     +g c ++gc++sk+l ++a++a+ ++                                      
   KOO23855.1  23 DLLVIGSGSAGIGAAKGAASLGKSVALIEkanvFGGDCTWVGCVPSKTLIATAKAAHAVRtahkygvstggspsdvkvdmkvvraqldlirqriydad 120
                  899*************************9999**********************9998889*******************999999999998888877 PP

                  ...HHHHCHHHHCCCCHCCTCEEEEESCEEEEETEEECTCEEEEEE.SEEEE---EEE-BCTCTTC.TTBEECCSECHHHHHHCCSS-TSEEEEES-S CS
                  ...xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2  58 ...evvkklnqgielllgeevvkidpgkkkvklekkkegdeekiay.dklvlAtGssprdlgipGvaenvgklvrtldsaealklkllpkrivvvGgG 151
                     ev+++l+   ++ ++    ++++ k +v+++ +++g +e +++ + +v+AtG++pr +++pG+    +++ ++l+    ++l+ lp++++v+GgG
   KOO23855.1 121 dspEVFESLGVTPIFGAA----RFINRK-QVEVTLNSDGRTELFTArKGIVIATGAQPRPPDLPGL----VEG-DYLTYESIWSLESLPASLAVIGGG 208
                  766554444444222222....332222.44444445588888888899*****************....566.89********************** PP

                  HHHHHHHHHHHHHT-EEEEEESSSSSSTTS-HHHHHHHHHHHHHTTEEEEESCEEEEEEETTE....EEEEEETTSCEEEESEEEE-S-EEES-HHCS CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2 152 yiGvElAaalaklgkevtlveardrllraldkelsaaleealekeGvevklgtsvkeidgnge....klevvledgeeidadlvvvavGvrpstelle 245
                  +iG+ElA+al++lg+ vt++   ++ll+  d +++  l+ea+ +eG++v+ g     +++ g      +e++ +  +++ ad ++vavG++p t+ l+
   KOO23855.1 209 PIGCELAQALSRLGSSVTIIA--PKLLPDADGDAGGVLAEAFADEGIQVVAGRARSVATEAGGakvvTIELTGGATTSVRADALLVAVGRKPLTSSLG 304
                  ******************985..6*************************98876655555555653334466666666******************** PP

                  .HCCT-EEEETTEEE--TTSBESSTTEEE-GGGCTECCSS--HHHHHHHH CS
                  .xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2 246 .eklglelderggivvdeflrtnvpgiyaiGDvaggkggpelaqaAvqqG 294
                   e++g+el++ ggi+vd +l+t+  g+ya+GD++   g  + ++ Av+qG
   KOO23855.1 305 lEQIGVELTPSGGIKVDGTLQTTARGVYAAGDCT---GDKQYTHYAVKQG 351
                  **********************************...5556666666665 PP

>> Pyr_redox_dim  Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   82.4   0.1     3e-26   2.5e-23       1     107 [.     381     490 ..     381     493 .. 0.93

  Alignments for each domain:
  == domain 1  score: 82.4 bits;  conditional E-value: 3e-26
                    BEEEEESSSEEEEEES-HHHHHHHHSG..EEEEEEEEECGHHHCHTTH.TEEEEEEEEETTTTBEEEEEEECTTHHHHHHHHHHHHHTTSBHHHHH CS
  Pyr_redox_dim   1 iptvvftdpevasvGlteeeAkaagie..ikvgkfpfkangralayae.tkgfvKlvadaktgkvlGahivGpgageliqelavaikagltvedla 93 
                    ip+++ft+pevas+Gl+e  A a+ +   ++ +  p+++n+ a+a ++ ++gf+Klv++a + +++Ga+iv+pgage+i e+ava+  +++v+ l 
     KOO23855.1 381 IPSCTFTSPEVASIGLSESAAMAKFGVgkVRAKIKPLRKNDGAIAGRNdAHGFIKLVYKAGSTELIGATIVAPGAGEMIGEIAVALASKMKVSALG 476
                    79******************9999875568888888889*****99999*********************************************** PP

                    TSBSSSSSTGGGGH CS
  Pyr_redox_dim  94 dtihihPtlsealk 107
                    + +h++P+ls  ++
     KOO23855.1 477 NVMHAYPSLSWGIQ 490
                    *********96555 PP

>> Pyr_redox  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.2   0.6   0.00023       0.2       2      34 ..      24      56 ..      23      60 .. 0.92
   2 !   47.0   0.2   3.4e-15   2.9e-12       2      62 ..     202     260 ..     201     280 .. 0.82

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 0.00023
                EEEECSSHHHHHHHHHHHHTTSEEEEEESSSSS CS
   Pyr_redox  2 vvvvGgGyiglElAgalaelgkkVtvversdkl 34
                ++v+G+G  g+ +A+ +a lgk+V ++e ++ +
  KOO23855.1 24 LLVIGSGSAGIGAAKGAASLGKSVALIEKANVF 56
                69**************************98765 PP

  == domain 2  score: 47.0 bits;  conditional E-value: 3.4e-15
                 EEEECSSHHHHHHHHHHHHTTSEEEEEESSSSSSTTSSHHHHHHHHHHHHHTTEEEECSEE CS
   Pyr_redox   2 vvvvGgGyiglElAgalaelgkkVtvversdkllrllDeeaskilqeklekngievllntk 62 
                 ++v+GgG ig+ElA+al++lg++Vt++   +kll+  D +a+ +l+e + ++gi+v+ ++ 
  KOO23855.1 202 LAVIGGGPIGCELAQALSRLGSSVTIIA--PKLLPDADGDAGGVLAEAFADEGIQVVAGRA 260
                 79*************************6..6799**********************98754 PP

>> GIDA  Glucose inhibited division protein A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.5   5.3   1.2e-07    0.0001       1      58 [.      23      83 ..      23     172 .. 0.89
   2 !   13.1   0.3   4.2e-05     0.036       3      31 ..     203     231 ..     201     248 .. 0.93
   3 !    6.5   0.1    0.0046       3.9     348     385 ..     322     359 ..     314     363 .. 0.85

  Alignments for each domain:
  == domain 1  score: 21.5 bits;  conditional E-value: 1.2e-07
                CEEEE-SSHHHHHHHHHHHHTT--EEEE...ES-GGGTT--SSSSEEE-TTHHHHHHHHHH CS
        GIDA  1 dviViGgGhAGceAAlaaarlGakvlLi...thkldtiaelsCnpsiggiakgllvrEida 58
                d+ ViG G AG+ AA  aa lG +v+Li       +++ +++C ps   ia ++  + ++ 
  KOO23855.1 23 DLLVIGSGSAGIGAAKGAASLGKSVALIekaNVFGGDCTWVGCVPSKTLIATAKAAHAVRT 83
                578*************************87666789**************88887777765 PP

  == domain 2  score: 13.1 bits;  conditional E-value: 4.2e-05
                 EEE-SSHHHHHHHHHHHHTT--EEEEES- CS
        GIDA   3 iViGgGhAGceAAlaaarlGakvlLithk 31 
                  ViGgG  Gce A a++rlG +v++i++k
  KOO23855.1 203 AVIGGGPIGCELAQALSRLGSSVTIIAPK 231
                 7************************9876 PP

  == domain 3  score: 6.5 bits;  conditional E-value: 0.0046
                 TTSBBSSSBTEEE-CGGGTB-SHHHHHH.HHHHHHHHHH CS
        GIDA 348 ntLetkkvkgLflAGqinGteGYeEaaa.qGllAGinaa 385
                  tL+t   +g+++AG+ +G + Y+  a  qG+ A +n++
  KOO23855.1 322 GTLQTT-ARGVYAAGDCTGDKQYTHYAVkQGVAAMTNVV 359
                 489998.89************9*997777****999986 PP

>> FAD_oxidored  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.1   0.8   4.5e-11   3.8e-08       1      43 [.      23      65 ..      23     125 .. 0.89
   2 ?    3.7   0.5     0.037        31       3      30 ..     203     230 ..     201     247 .. 0.93

  Alignments for each domain:
  == domain 1  score: 33.1 bits;  conditional E-value: 4.5e-11
  FAD_oxidored  1 DvvVvGGgpaGvaAAiaAaraGakvlLveergvlGGlltsglv 43
                  D++V+G+g+aG+ AA  Aa  G++v+L+e+ +v GG  t  + 
    KOO23855.1 23 DLLVIGSGSAGIGAAKGAASLGKSVALIEKANVFGGDCTWVGC 65
                  99**********************************9996554 PP

  == domain 2  score: 3.7 bits;  conditional E-value: 0.037
  FAD_oxidored   3 vVvGGgpaGvaAAiaAaraGakvlLvee 30 
                    V+GGgp G+  A a  r G +v ++ +
    KOO23855.1 203 AVIGGGPIGCELAQALSRLGSSVTIIAP 230
                   7************************976 PP

>> DAO  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.6   1.7   9.1e-05     0.077       1      38 [.      23      62 ..      23      77 .. 0.93
   2 ?    5.3   0.0     0.015        13     156     230 ..     126     192 ..     124     200 .. 0.65
   3 !   17.8   2.4   2.4e-06     0.002       2      50 ..     202     250 ..     201     265 .. 0.89
   4 ?    4.0   0.6     0.037        31     152     201 ..     244     295 ..     243     315 .. 0.74

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 9.1e-05
                EEEEECTSHHHHHHHHHHHHTT..EEEEESSSSTTSSGGG CS
         DAO  1 dvviiGGGiiGlstAyeLarrg..VtllekgdiagsgaSg 38
                d+++iG+G +G+++A  +a  g  V+l+ek++ +g  +++
  KOO23855.1 23 DLLVIGSGSAGIGAAKGAASLGksVALIEKANVFGGDCTW 62
                789***************99999*********99977776 PP

  == domain 2  score: 5.3 bits;  conditional E-value: 0.015
                 HHHTT-EEEESECEEEEEEEETCEEEEEEECT.EEE..EEEEE.EEE--GGGHHHHHTTCTTTSEEEEEEEEEEEEEEC CS
         DAO 156 aealGveilegtevtgleeedgkvwgverttp.gen..daada.vVnaaGawsdllgllkeldlpispvrgqvlvlkpl 230
                 +e+lGv+ ++g  ++ ++++    ++v   ++ g++  ++a++ +V+a+Ga+ +      + dlp   v g +l+++ +
  KOO23855.1 126 FESLGVTPIFG-AARFINRK---QVEVT-LNSdGRTelFTARKgIVIATGAQPR------PPDLP-GLVEGDYLTYESI 192
                 68899999999.77778553...45553.333355534467889******9943......22346.6678888877655 PP

  == domain 3  score: 17.8 bits;  conditional E-value: 2.4e-06
                 EEEECTSHHHHHHHHHHHHTT..EEEEESSSSTTSSGGGSSEEEEESSSST CS
         DAO   2 vviiGGGiiGlstAyeLarrg..VtllekgdiagsgaSgrnsgllhsglry 50 
                 +++iGGG iG+  A +L+r g  Vt++  +  +   a g ++g+l+ ++++
  KOO23855.1 202 LAVIGGGPIGCELAQALSRLGssVTIIAPK-LLP-DADGDAGGVLAEAFAD 250
                 58****************9999********.888.9*********998764 PP

  == domain 4  score: 4.0 bits;  conditional E-value: 0.037
                 HHHHHHHTT-EEEESECEEEEEEEE..TCEEEEEEECTEEE..EEEEEEEE--G CS
         DAO 152 laraaealGveilegtevtgleeed..gkvwgverttpgen..daadavVnaaG 201
                 la+a+++ G++++ g +++++  e    kv+++e  t g++  ++ada+ +a G
  KOO23855.1 244 LAEAFADEGIQVVAG-RARSVATEAggAKVVTIE-LTGGATtsVRADALLVAVG 295
                 7999***********.999995544346666664.4444442225688999998 PP

>> NAD_binding_8  NAD(P)-binding Rossmann-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.8   1.6   3.9e-07   0.00033       1      36 [.      26      61 ..      26      90 .. 0.91
   2 !   10.4   0.1   0.00068      0.58       1      25 [.     204     228 ..     204     232 .. 0.96

  Alignments for each domain:
  == domain 1  score: 20.8 bits;  conditional E-value: 3.9e-07
                   EE--SHHHHHHHHHHHCCTEEEEEE-SSSSSSGGG- CS
  NAD_binding_8  1 IvGaGlsGlvaAylLakagfdvlllekrdrlGGraa 36
                   ++G+G +G  aA  +a  g++v l+ek++ +GG+++
     KOO23855.1 26 VIGSGSAGIGAAKGAASLGKSVALIEKANVFGGDCT 61
                   8*********************************97 PP

  == domain 2  score: 10.4 bits;  conditional E-value: 0.00068
                    EE--SHHHHHHHHHHHCCTEEEEEE CS
  NAD_binding_8   1 IvGaGlsGlvaAylLakagfdvlll 25 
                    ++G+G  G+ +A++L++ g +v+++
     KOO23855.1 204 VIGGGPIGCELAQALSRLGSSVTII 228
                    8**********************97 PP

>> Pyr_redox_3  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.7   0.6   0.00026      0.22       1      32 [.      25      55 ..      25      96 .. 0.94
   2 !   15.1   0.0   1.2e-05      0.01     123     305 .]     159     335 ..     140     335 .. 0.59

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00026
  Pyr_redox_3  1 iIiGaGPaGlaaaielkkagledylilEkgni 32
                 ++iG G aG++aa  +  +g  ++  +Ek+n+
   KOO23855.1 25 LVIGSGSAGIGAAKGAASLGK-SVALIEKANV 55
                 69******************9.89*****987 PP

  == domain 2  score: 15.1 bits;  conditional E-value: 1.2e-05
  Pyr_redox_3 123 yeAkk.viiAtGefdkPnklnipGeek.lvkhyskvkefhkyagqkvvViGgknSavDaAlelvrkgaeVtvvtrgseiekeesdpsyslkpdienrl 218
                  ++A+k ++iAtG   +P+ ++ pG  +     y  + ++ +     ++ViGg+  +++ A  l r g++Vt++ ++   ++ + d            l
   KOO23855.1 159 FTARKgIVIATGA--QPRPPDLPGLVEgDYLTYESIWSL-ESLPASLAVIGGGPIGCELAQALSRLGSSVTIIAPKLLPDA-DGDAGG--------VL 244
                  556544999***9..999999999874233333334444.33478999************************999864333.333333........33 PP

  Pyr_redox_3 219 eelvkeekikvlf...naevkeikekeeeykvktedgkkvev.kddvvlatGykpdlsf..lkkslfeldedgrpvlteeteetnvpglflaG 305
                  +e+ + e i+v+    ++ ++e     + ++++ + g +++v  d  ++a+G kp +s   l++ ++el+ +g ++++  t +t+  g++ aG
   KOO23855.1 245 AEAFADEGIQVVAgraRSVATEAGG-AKVVTIELTGGATTSVrADALLVAVGRKPLTSSlgLEQIGVELTPSGGIKVDG-TLQTTARGVYAAG 335
                  3333332233332000223333332.23345555555555552344455588888777733444667777777777764.4555577777776 PP

>> FAD_binding_2  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.2   3.5   1.8e-08   1.6e-05       1      40 [.      23      62 ..      23      89 .. 0.95
   2 ?    1.3   2.1      0.17   1.4e+02     183     205 ..     152     180 ..     141     274 .. 0.57
   3 !    7.0   0.1    0.0031       2.7     374     403 ..     316     339 ..     310     351 .. 0.87

  Alignments for each domain:
  == domain 1  score: 24.2 bits;  conditional E-value: 1.8e-08
                   SEEEE--SHHHHHHHHHHHHTTT-EEEEESSSGGGSGGGG CS
  FAD_binding_2  1 DviViGsGlAGLaAAleaaeaGlkvavvekeqefggataw 40
                   D++ViGsG AG  AA  aa  G++va++ek+++fgg  +w
     KOO23855.1 23 DLLVIGSGSAGIGAAKGAASLGKSVALIEKANVFGGDCTW 62
                   89**********************************8777 PP

  == domain 2  score: 1.3 bits;  conditional E-value: 0.17
                    TTTCEEEEEES.EEEE-----GG...... CS
  FAD_binding_2 183 esgrevrirak.avvlatgGfgr.....a 205
                    ++gr++ ++a+ ++v+atg+ +r      
     KOO23855.1 152 SDGRTELFTARkGIVIATGAQPRppdlpG 180
                    66666666666666666666665443330 PP

  == domain 3  score: 7.0 bits;  conditional E-value: 0.0031
                    -EEEBETTSBESTTEEESSBTEEE-STCEE CS
  FAD_binding_2 374 gGvetdengrvldadgqpipGLYAaGevaa 403
                    gG+++d ++++      +  G YAaG +++
     KOO23855.1 316 GGIKVDGTLQT------TARGVYAAGDCTG 339
                    9**********......***********94 PP

>> Lycopene_cycl  Lycopene cyclase protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.5   0.6   0.00053      0.45       1      45 [.      23      63 ..      23      82 .. 0.89
   2 !   13.8   0.2   2.6e-05     0.023       2      35 ..     202     231 ..     201     237 .. 0.87
   3 ?    3.1   0.1     0.047        40      93     140 ..     244     295 ..     241     315 .. 0.78

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 0.00053
  Lycopene_cycl  1 DvvviGaGpAglslAarlteakpglkvvlieaspsllfpnnyvWs 45
                   D++viG+G Ag+  A+    a  g +v lie ++  +f+++ +W+
     KOO23855.1 23 DLLVIGSGSAGIGAAKGA--ASLGKSVALIEKAN--VFGGDCTWV 63
                   99***********99999..**********6554..479999997 PP

  == domain 2  score: 13.8 bits;  conditional E-value: 2.6e-05
  Lycopene_cycl   2 vvviGaGpAglslAarlteakpglkvvlieasps 35 
                    ++viG+Gp g+ lA+ l  ++ g +v++i a+ +
     KOO23855.1 202 LAVIGGGPIGCELAQAL--SRLGSSVTII-AP-K 231
                    78***************..**********.33.3 PP

  == domain 3  score: 3.1 bits;  conditional E-value: 0.047
  Lycopene_cycl  93 llerlvengvklleakvesveeeeagesl..vvleggr..kirarlvvdarg 140
                    l+e ++++g++ + +++ sv+ e  g ++  + l gg    +ra + ++a g
     KOO23855.1 244 LAEAFADEGIQVVAGRARSVATEAGGAKVvtIELTGGAttSVRADALLVAVG 295
                    678899****************999655501566788877899999999988 PP

>> HI0933_like  HI0933-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.9   1.0   1.2e-06     0.001       2      36 ..      23      57 ..      22      64 .. 0.93
   2 ?    4.6   0.3     0.012        11       3      29 ..     202     228 ..     200     232 .. 0.92
   3 ?    1.4   0.2      0.12     1e+02     136     187 ..     266     320 ..     242     329 .. 0.65

  Alignments for each domain:
  == domain 1  score: 17.9 bits;  conditional E-value: 1.2e-06
                 SEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSS- CS
  HI0933_like  2 dviviGgGaAGlmaAisaakrgkrVlllekakklg 36
                 d++viG G AG+ aA  aa+ gk+V+l+eka+ +g
   KOO23855.1 23 DLLVIGSGSAGIGAAKGAASLGKSVALIEKANVFG 57
                 789****************************9887 PP

  == domain 2  score: 4.6 bits;  conditional E-value: 0.012
                  EEEE--SHHHHHHHHHHHHTT--EEEE CS
  HI0933_like   3 viviGgGaAGlmaAisaakrgkrVlll 29 
                  ++viGgG+ G   A ++++ g++V+++
   KOO23855.1 202 LAVIGGGPIGCELAQALSRLGSSVTII 228
                  68***********************98 PP

  == domain 3  score: 1.4 bits;  conditional E-value: 0.12
                  ECETTE.EEEEE...TTEEEEESEEEE----SS-.GGGT--SHHHHHHHHTT--E CS
  HI0933_like 136 ekeedgkfrvktk..seeeleadklvlAtGGlSi.PklGstgkgyklaeqfghti 187
                  e+   ++++++++   +++++ad+l++A+G + +  +lG ++ g++l  + g+++
   KOO23855.1 266 EAGGAKVVTIELTggATTSVRADALLVAVGRKPLtSSLGLEQIGVELTPSGGIKV 320
                  23333444455433367899**********9986257999999999999988887 PP

>> FAD_binding_3  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.0   0.5    0.0018       1.5       3      34 ..      23      54 ..      21      57 .. 0.93
   2 !   12.4   0.6     8e-05     0.068       5      30 ..     203     228 ..     200     232 .. 0.93

  Alignments for each domain:
  == domain 1  score: 8.0 bits;  conditional E-value: 0.0018
                   EEEEE--SHHHHHHHHHHHHTTHHEEEEESSS CS
  FAD_binding_3  3 dVlIVGaGpaGlmlallLseaGvrvvlvekrs 34
                   d l++G+G aG+ +a+  ++ G +v l+ek +
     KOO23855.1 23 DLLVIGSGSAGIGAAKGAASLGKSVALIEKAN 54
                   779**************************976 PP

  == domain 2  score: 12.4 bits;  conditional E-value: 8e-05
                    EEE--SHHHHHHHHHHHHTTHHEEEE CS
  FAD_binding_3   5 lIVGaGpaGlmlallLseaGvrvvlv 30 
                    +++G+Gp G  la+ Ls+ G +v+++
     KOO23855.1 203 AVIGGGPIGCELAQALSRLGSSVTII 228
                    69**********************98 PP

>> AlaDh_PNT_C  Alanine dehydrogenase/PNT, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.9   0.5   0.00011     0.098      31      59 ..      24      52 ..      12      61 .. 0.90
   2 !    7.9   1.2    0.0019       1.6      28      57 ..     199     228 ..     195     288 .. 0.92

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 0.00011
                 EEEESTSHHHHHHHHHHHHTT-EEEEEES CS
  AlaDh_PNT_C 31 vlviGgGvaGlqAiatakglgakVtvlDv 59
                  lviG G aG+ A++ a++lg +V ++++
   KOO23855.1 24 LLVIGSGSAGIGAAKGAASLGKSVALIEK 52
                 79**********************99886 PP

  == domain 2  score: 7.9 bits;  conditional E-value: 0.0019
                  --EEEEESTSHHHHHHHHHHHHTT-EEEEE CS
  AlaDh_PNT_C  28 pakvlviGgGvaGlqAiatakglgakVtvl 57 
                  pa   viGgG  G + +++ ++lg +Vt++
   KOO23855.1 199 PASLAVIGGGPIGCELAQALSRLGSSVTII 228
                  8999************************97 PP

>> NAD_binding_7  Putative NAD(P)-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.4   0.1      0.51   4.3e+02       9      39 ..      23      53 ..      19     119 .. 0.83
   2 !   15.2   0.2   2.6e-05     0.023      10      44 ..     202     236 ..     197     298 .. 0.79

  Alignments for each domain:
  == domain 1  score: 1.4 bits;  conditional E-value: 0.51
  NAD_binding_7  9 kvlvvGgGevAarkvrklleagakvtvvape 39
                     lv+G G+ +   ++  ++ g+ v ++ ++
     KOO23855.1 23 DLLVIGSGSAGIGAAKGAASLGKSVALIEKA 53
                   579********99999999999999999877 PP

  == domain 2  score: 15.2 bits;  conditional E-value: 2.6e-05
  NAD_binding_7  10 vlvvGgGevAarkvrklleagakvtvvapevkeel 44 
                      v+GgG+++ + ++ l + g  vt++ap++ + +
     KOO23855.1 202 LAVIGGGPIGCELAQALSRLGSSVTIIAPKLLPDA 236
                    579***************************74433 PP

>> Thi4  Thi4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.7   9.8e-06    0.0084      18      73 ..      22      77 ..      17      91 .. 0.83
   2 ?    1.9   0.2      0.13   1.1e+02      19      63 ..     201     244 ..     192     254 .. 0.84

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 9.8e-06
                EEEEEE--SHHHHHHHHHHHHCTTS-EEEEESSSS--TT.TTTTSTTBSEEEEETTT CS
        Thi4 18 sDvvivGaGssGLtaayylakkpdlkvailersvspGGG.awlGGqlfsaivvrkpa 73
                 D++++G+Gs+G+ aa+  a   +  va++e+   +GG  +w G    ++++   +a
  KOO23855.1 22 FDLLVIGSGSAGIGAAKGAASL-GKSVALIEKANVFGGDcTWVGCVPSKTLIATAKA 77
                599**************99998.999******9999995379998777777665554 PP

  == domain 2  score: 1.9 bits;  conditional E-value: 0.13
                 EEEEE--SHHHHHHHHHHHHCTTS-EEEEESSSS--TTTTTTSTT CS
        Thi4  19 DvvivGaGssGLtaayylakkpdlkvailersvspGGGawlGGql 63 
                  ++++G+G+ G   a+ l++  +  v+i+  ++ p      GG l
  KOO23855.1 201 SLAVIGGGPIGCELAQALSRL-GSSVTIIAPKLLPDADGDAGGVL 244
                 5789****************9.99999999988877666666665 PP

>> TrkA_N  TrkA-N domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.1   0.1      0.53   4.5e+02       2      30 ..      25      53 ..      24      56 .. 0.88
   2 ?   11.8   0.1   0.00025      0.22       2      50 ..     203     261 ..     202     274 .. 0.68

  Alignments for each domain:
  == domain 1  score: 1.1 bits;  conditional E-value: 0.53
                EEES-SHHHHHHHHHHHH.TTEEEEEEESS CS
      TrkA_N  2 iiiGlGrvGrslaeeLse.ggkdvvvidkd 30
                ++iG G  G   a+   + g+ +v +i+k 
  KOO23855.1 25 LVIGSGSAGIGAAKGAASlGK-SVALIEKA 53
                79****************666.6***9985 PP

  == domain 2  score: 11.8 bits;  conditional E-value: 0.00025
                 EEES-SHHHHHHHHHHHH.TTEEEEEE......ESSHHH....HHHHHHTTSEEEES-TT CS
      TrkA_N   2 iiiGlGrvGrslaeeLse.ggkdvvvi......dkdeer....veelreeglevvvgdat 50 
                 ++iG G +G +la+ Ls+ g+ +v++i      d d ++    +e +++eg++vv g a 
  KOO23855.1 203 AVIGGGPIGCELAQALSRlGS-SVTIIapkllpDADGDAggvlAEAFADEGIQVVAGRAR 261
                 79****************777.59998222222333333444455666666666666665 PP

>> K_oxygenase  L-lysine 6-monooxygenase (NADPH-requiring)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.1   0.2       7.8   6.6e+03       3      16 ..      22      35 ..      20      51 .. 0.66
   2 ?   11.7   0.0   0.00012       0.1     133     215 ..     146     223 ..     137     232 .. 0.75
   3 ?   -0.1   0.0      0.46   3.9e+02     131     160 ..     271     298 ..     256     303 .. 0.75

  Alignments for each domain:
  == domain 1  score: -4.1 bits;  conditional E-value: 7.8
  K_oxygenase  3 lDligiGiGpsnLs 16
                 +Dl  iG G + ++
   KOO23855.1 22 FDLLVIGSGSAGIG 35
                 66677776666555 PP

  == domain 2  score: 11.7 bits;  conditional E-value: 0.00012
  K_oxygenase 133 ltveskdaegeeeelearn.lvlgvGtepkiPevleklegkervvHsseylerkeellakkriaVvGsGqSaaeifedllrrqk 215
                  ++v+  +++g++e ++ar+ +v+++G +p  P++   +eg + ++  s + + +     + ++aV+G+G  + e+++ l r  +
   KOO23855.1 146 VEVTL-NSDGRTELFTARKgIVIATGAQPRPPDLPGLVEG-DYLTYES-IWSLE---SLPASLAVIGGGPIGCELAQALSRLGS 223
                  45554.58999999999877**********9999887775.4443333.33333...46899*************999987655 PP

  == domain 3  score: -0.1 bits;  conditional E-value: 0.46
  K_oxygenase 131 elltveskdaegeeeelearnlvlgvGtep 160
                  +++t+e   + g +++++a +l+++vG +p
   KOO23855.1 271 KVVTIEL--TGGATTSVRADALLVAVGRKP 298
                  4555555..679999************998 PP

>> XdhC_C  XdhC Rossmann domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.7   0.0      0.41   3.5e+02       1      35 [.      24      68 ..      24     112 .. 0.72
   2 ?    9.9   0.1    0.0012         1       1      30 [.     202     231 ..     202     278 .. 0.91

  Alignments for each domain:
  == domain 1  score: 1.7 bits;  conditional E-value: 0.41
                EEEE--STTHHHHHHHHHHHTEEEEEEES-GGGG..........- CS
      XdhC_C  1 lvifGaghvaqalarlaaalgfrvtvvdpreefa..........t 35
                l+++G g  +   a+ aa+lg +v ++++ + f           +
  KOO23855.1 24 LLVIGSGSAGIGAAKGAASLGKSVALIEKANVFGgdctwvgcvpS 68
                7899999999999********999999998877655555555542 PP

  == domain 2  score: 9.9 bits;  conditional E-value: 0.0012
                 EEEE--STTHHHHHHHHHHHTEEEEEEES- CS
      XdhC_C   1 lvifGaghvaqalarlaaalgfrvtvvdpr 30 
                 l+++G+g+++ +la+ +++lg +vt++ p+
  KOO23855.1 202 LAVIGGGPIGCELAQALSRLGSSVTIIAPK 231
                 789***********************9886 PP

>> F420_oxidored  NADP oxidoreductase coenzyme F420-dependent
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.5   0.6      0.55   4.7e+02       4      29 ..      26      48 ..      23      56 .. 0.83
   2 ?    8.8   0.1    0.0028       2.4       2      31 ..     202     228 ..     201     232 .. 0.89
   3 ?    4.8   0.4      0.05        43       8      74 ..     238     299 ..     236     307 .. 0.71

  Alignments for each domain:
  == domain 1  score: 1.5 bits;  conditional E-value: 0.55
                   EETTSHHHHHHHHHHHHTTS-GGCEE CS
  F420_oxidored  4 iiGaGnmgealasgllaagaqpheiv 29
                   +iG+G+ g + a+g+++ g   +++ 
     KOO23855.1 26 VIGSGSAGIGAAKGAASLG---KSVA 48
                   89****************9...6655 PP

  == domain 2  score: 8.8 bits;  conditional E-value: 0.0028
                    EEEETTSHHHHHHHHHHHHTTS-GGCEEEE CS
  F420_oxidored   2 igiiGaGnmgealasgllaagaqpheivva 31 
                    +++iG+G +g  la+ l++ g   ++++++
     KOO23855.1 202 LAVIGGGPIGCELAQALSRLG---SSVTII 228
                    79*******************...888876 PP

  == domain 3  score: 4.8 bits;  conditional E-value: 0.05
                    SHHHHHHHHHHHHTTS-GGCEEEEEESSCCCHHHHHHHHC-EEECECHHHHHHH-SEEEE-S-HHHH CS
  F420_oxidored   8 Gnmgealasgllaagaqpheivvansrnpekaeelaeelgvkvtavdneeaaeeadvvvlavkpedv 74 
                    G+ g  la+ ++ +g    ++v +  r+  + +  a+ + +++t+  + + + +ad +++av  + +
     KOO23855.1 238 GDAGGVLAEAFADEG---IQVVAGRARSVATEAGGAKVVTIELTG-GATTSV-RADALLVAVGRKPL 299
                    899************...999966555555555555555566666.455555.59999999977655 PP

>> DFP  DNA / pantothenate metabolism flavoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.7   0.4      0.23   1.9e+02      28      52 ..      29      53 ..      27      99 .. 0.83
   2 ?    4.6   0.0     0.029        25      29      52 ..     208     231 ..     203     237 .. 0.89
   3 ?    1.8   0.4      0.22   1.9e+02      29      67 ..     238     276 ..     234     290 .. 0.72

  Alignments for each domain:
  == domain 1  score: 1.7 bits;  conditional E-value: 0.23
                --HHHHHHHHHHHHTT-EEEEEE-S CS
         DFP 28 SGkmGyalAeaaaarGaeVtlvsgp 52
                SG  G+  A+ aa+ G +V l+   
  KOO23855.1 29 SGSAGIGAAKGAASLGKSVALIEKA 53
                9*********************865 PP

  == domain 2  score: 4.6 bits;  conditional E-value: 0.029
                 -HHHHHHHHHHHHTT-EEEEEE-S CS
         DFP  29 GkmGyalAeaaaarGaeVtlvsgp 52 
                 G  G++lA+a+ + G +Vt+++ +
  KOO23855.1 208 GPIGCELAQALSRLGSSVTIIAPK 231
                 788*****************9855 PP

  == domain 3  score: 1.8 bits;  conditional E-value: 0.22
                 -HHHHHHHHHHHHTT-EEEEEE-S-SS---T.T-EEEE-- CS
         DFP  29 GkmGyalAeaaaarGaeVtlvsgpvsletpe.gvevvkve 67 
                 G  G  lAea+a++G +V    +  s++t++ g++vv +e
  KOO23855.1 238 GDAGGVLAEAFADEGIQVVAGRAR-SVATEAgGAKVVTIE 276
                 88999**********998554444.444444256666665 PP

>> 3HCDH_N  3-hydroxyacyl-CoA dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.6   0.6     0.032        27       4      31 ..      26      53 ..      23      61 .. 0.91
   2 ?    8.5   0.1     0.002       1.7       2      29 ..     202     229 ..     201     240 .. 0.92
   3 ?   -0.2   0.1      0.96   8.2e+02      10      36 ..     240     266 ..     236     278 .. 0.76

  Alignments for each domain:
  == domain 1  score: 4.6 bits;  conditional E-value: 0.032
                EE--SCCHHHHHHHHHHTT-EEEEE-S- CS
     3HCDH_N  4 viGaGtmGagiaavfasagleVvlvdis 31
                viG+G  G g a+ +as g +V l++ +
  KOO23855.1 26 VIGSGSAGIGAAKGAASLGKSVALIEKA 53
                9***********************9976 PP

  == domain 2  score: 8.5 bits;  conditional E-value: 0.002
                 EEEE--SCCHHHHHHHHHHTT-EEEEE- CS
     3HCDH_N   2 vaviGaGtmGagiaavfasagleVvlvd 29 
                 +aviG G +G ++a+++ + g +V+++ 
  KOO23855.1 202 LAVIGGGPIGCELAQALSRLGSSVTIIA 229
                 69***********************986 PP

  == domain 3  score: -0.2 bits;  conditional E-value: 0.96
                 CHHHHHHHHHHTT-EEEEE-S-HHHHH CS
     3HCDH_N  10 mGagiaavfasagleVvlvdiseeale 36 
                  G  +a++fa +g++Vv    ++ a e
  KOO23855.1 240 AGGVLAEAFADEGIQVVAGRARSVATE 266
                 57889***********98766655555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (514 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       413  (0.0230353); expected 358.6 (0.02)
Passed bias filter:                      316  (0.0176251); expected 358.6 (0.02)
Passed Vit filter:                        48  (0.00267723); expected 17.9 (0.001)
Passed Fwd filter:                        22  (0.00122706); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              21  [number of targets reported over threshold]
# CPU time: 0.58u 0.25s 00:00:00.83 Elapsed: 00:00:00.40
# Mc/sec: 3880.84
//
Query:       KOO23856.1  [L=333]
Description: protein phosphatase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.4e-40  138.8   0.0    3.5e-40  138.3   0.0    1.2  1  PP2C      Protein phosphatase 2C
    2.4e-07   30.6   0.2    4.8e-07   29.6   0.2    1.5  1  PP2C_2    Protein phosphatase 2C


Domain annotation for each model (and alignments):
>> PP2C  Protein phosphatase 2C
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  138.3   0.0   3.9e-44   3.5e-40       4     197 ..      40     231 ..      37     235 .. 0.87

  Alignments for each domain:
  == domain 1  score: 138.3 bits;  conditional E-value: 3.9e-44
                 EEEEECCCCSSHHEEEECCCCTCTTCCCCCCEEEEEEEEESSSHHHHHHHHHHH.....HHHHHHHHCHTTH....HHHHHHHHHHHHHHHHHHHHHHH CS
        PP2C   4 gaselqgarksmedahislanlesssgkssvsffavfdghggseaakyarehle.....eilksqksfeele....kleqalrksfladtdeelksska 93 
                 + s+l+g+r smed+ +++          + + fav dghggs ++++ + +l+        ++  + ++ +    ++ q+l++++++ +d  l+++  
  KOO23856.1  40 AHSCLRGWRLSMEDEAVLEL------LTPALGCFAVLDGHGGSFCSRWGADELPrrlhhI--ALLVERSTEAdearQVAQQLSEAVRQ-MDADLRTRGR 129
                 567899**********9988......67899*********************99999552..33333222222356************.7777777333 PP

                 HCHCCT-EEEEEEEEEETTEEEEEEESS-EEEEEETTEEEEECS---STTSHHHHHHHHHTT--EEECCEEETTTBSBSB-EE-GGGTCCCC...CCST CS
        PP2C  94 ntepsksGstavvalirgtklyvAnvGDSravLcrkgnakkeltedHkpsdedEreRIeeaggsvsngegrvngsLavsRalGDlelkpket...eeql 189
                     + +Gst vv l+++ +l vAn+GDSravLcr+g a   l++dHkp++ +Er+RI +agg++    grvng L++sRalGD++ k+  +    +q+
  KOO23856.1 130 --PAWACGSTLVVLLVTERSLTVANLGDSRAVLCRAGMAL-PLSRDHKPKSAAERQRILQAGGFIV--DGRVNGDLSLSRALGDFRHKCVANlppAKQP 223
                 ..36***********************************9.*************************..9********************777***999* PP

                 SB---EEE CS
        PP2C 190 vsaePdvt 197
                 +saeP++ 
  KOO23856.1 224 ISAEPELL 231
                 *****986 PP

>> PP2C_2  Protein phosphatase 2C
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.6   0.2   5.4e-11   4.8e-07      26     135 ..      65     173 ..      49     185 .. 0.77

  Alignments for each domain:
  == domain 1  score: 29.6 bits;  conditional E-value: 5.4e-11
      PP2C_2  26 ll.aVaDGaGSakrSerGariaveavvealaelleseeee.eeallraleaailadvlkeeaeaqdaelkdyatTllaavvtpdeivalqiGDGaivvr 122
                  + aV DG+G    S+ Ga  + + + +    + +s e++  ++++++l++a+++   ++    ++ ++ ++++Tl++++vt++ + ++++GD+ +v+ 
  KOO23856.1  65 GCfAVLDGHGGSFCSRWGADELPRRLHHIALLVERSTEADeARQVAQQLSEAVRQM--DADLRTRGRPAWACGSTLVVLLVTERSLTVANLGDSRAVL- 160
                 455********************998655544443333334788888999999943..333344588*****************************65. PP

      PP2C_2 123 drdgevqllgepd 135
                  r+g   +l+ ++
  KOO23856.1 161 CRAGMALPLSRDH 173
                 5666666666555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (333 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       798  (0.0445089); expected 358.6 (0.02)
Passed bias filter:                      570  (0.0317921); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.44u 0.25s 00:00:00.69 Elapsed: 00:00:00.37
# Mc/sec: 2711.63
//
Query:       KOO23857.1  [L=484]
Description: hypothetical protein Ctob_003461 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.3e-32  112.7   0.0    2.1e-32  111.9   0.0    1.4  1  DUF3464   Photosynthesis affected mutant 68
    1.1e-06   28.9   0.1    2.5e-06   27.8   0.1    1.6  1  PDZ       PDZ domain
    1.3e-05   24.9   0.1    0.00034   20.4   0.0    2.4  2  PDZ_6     PDZ domain
    8.9e-05   22.7   0.6    0.00032   20.9   0.1    2.1  3  PDZ_2     PDZ domain


Domain annotation for each model (and alignments):
>> DUF3464  Photosynthesis affected mutant 68
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  111.9   0.0   4.7e-36   2.1e-32      50     143 ..     125     233 ..      60     239 .. 0.83

  Alignments for each domain:
  == domain 1  score: 111.9 bits;  conditional E-value: 4.7e-36
     DUF3464  50 a...............iPevVskRmirRvalfsGiPlalGlatfvvfylivskelvdlptwvvllvslvlFglgvlGlsYGvlSasWdeereGsllGle 133
                 a               +PevVs+Rm++Rv+ f+G+P++ Gl+tfv fy+  ++  +dlp+ +v++++ +l+ l++ G++YGv+S+sWde++eGsllG+e
  KOO23857.1 125 AltpeelapldpttgvMPEVVSQRMLKRVVPFAGLPVFGGLLTFVGFYYANTQLELDLPPQIVAFTTQALLLLSFAGITYGVMSTSWDENEEGSLLGWE 223
                 23334444444555559********************************************************************************** PP

     DUF3464 134 efkknwgrli 143
                 ++  n+ +++
  KOO23857.1 224 NVGPNIASMQ 233
                 ******9994 PP

>> PDZ  PDZ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.8   0.1   5.5e-10   2.5e-06       9      77 ..     387     455 ..     382     459 .. 0.86

  Alignments for each domain:
  == domain 1  score: 27.8 bits;  conditional E-value: 5.5e-10
                 TSESSEEEEEETTSSSSSSEEEEEECTTSHHHHHT..SSTTEEEEEETTEETTTSHHHHHHHHHHTTTS.EE CS
         PDZ   9 rgglGfslkggsdqrgdkgifvsevlpggaaeadg..lkvGDkIlsvNgvdvenvsheeavqaikgskg.kv 77 
                 r+++G+  +++   +   g++v evl+ gaa+++g  l++GD++++v+ v v++   + a +aik +++ + 
  KOO23857.1 387 RKPMGIAFVENVGGG---GVYVDEVLAEGAAAKQGtkLEKGDQLVGVGSVLVAGSDFDGALDAIKATTSeTT 455
                 67899999*999996...**********77777777*************99999999999999999988544 PP

>> PDZ_6  PDZ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.1   0.0     0.041   1.8e+02       7      19 ..     248     260 ..     242     260 .. 0.85
   2 !   20.4   0.0   7.6e-08   0.00034       2      54 ..     405     459 ..     404     461 .. 0.94

  Alignments for each domain:
  == domain 1  score: 2.1 bits;  conditional E-value: 0.041
       PDZ_6   7 pgsPAdrAGlrvG 19 
                 ++s A++AG+r G
  KOO23857.1 248 EESDAEKAGIRMG 260
                 6799*******88 PP

  == domain 2  score: 20.4 bits;  conditional E-value: 7.6e-08
       PDZ_6   2 VtaVdpgsPAdrAG..lrvGDiilsvNGqpveglsladvaallrgsagesvvlvv 54 
                 V +V +++ A++ G  l+ GD+++ v+ + v g + + + +++++ + e + l++
  KOO23857.1 405 VDEVLAEGAAAKQGtkLEKGDQLVGVGSVLVAGSDFDGALDAIKATTSETTKLTF 459
                 8899********9999****************************99999999986 PP

>> PDZ_2  PDZ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.0       2.5   1.1e+04      22      33 ..     114     125 ..      99     126 .. 0.82
   2 ?   -2.6   0.0       1.6   7.1e+03      23      35 ..     248     260 ..     247     261 .. 0.86
   3 !   20.9   0.1   7.2e-08   0.00032       3      72 ..     390     462 ..     389     465 .. 0.94

  Alignments for each domain:
  == domain 1  score: -3.2 bits;  conditional E-value: 2.5
                 -TTSGGGGT.-- CS
       PDZ_2  22 keggPaakaglk 33 
                 ++++P++k+gl+
  KOO23857.1 114 QPADPFKKKGLA 125
                 578999999986 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 1.6
                 TTSGGGGT.--TT CS
       PDZ_2  23 eggPaakaglkag 35 
                 e++ a+kag+++g
  KOO23857.1 248 EESDAEKAGIRMG 260
                 6789******997 PP

  == domain 3  score: 20.9 bits;  conditional E-value: 7.2e-08
                 ..XX------..-EEEEEE-TTSGGGGT...--TT-EEEEETTB--SSHHHHHHHHH..TS-TT-EEEEEEEET CS
       PDZ_2   3 lGvsvsdeedtggvlvvsVkeggPaakag..lkagDvilkvdgkkvksledlislll..kkkpGdtVkltvlRd 72 
                 +G+ ++++ + ggv+v +V  +g aak+g  l++gD+++ v+++ v  ++d++++l   k+   +t klt++R+
  KOO23857.1 390 MGIAFVENVGGGGVYVDEVLAEGAAAKQGtkLEKGDQLVGVGSVLV-AGSDFDGALDaiKATTSETTKLTFFRG 462
                 79***************************99***************.9999**999988888999999999996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (484 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       447  (0.0249317); expected 358.6 (0.02)
Passed bias filter:                      338  (0.0188521); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.48u 0.26s 00:00:00.74 Elapsed: 00:00:00.41
# Mc/sec: 3521.90
//
Query:       KOO23858.1  [L=113]
Description: NADH dehydrogenase iron-sulfur protein mitochondrial precursor [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    3.3e-23   81.9   0.0    3.9e-23   81.7   0.0    1.1  1  Oxidored_q6  NADH ubiquinone oxidoreductase, 20 Kd subunit
  ------ inclusion threshold ------
        0.1   12.4   0.3        0.1   12.4   0.3    2.2  2  Secapin      Honey bee peptides


Domain annotation for each model (and alignments):
>> Oxidored_q6  NADH ubiquinone oxidoreductase, 20 Kd subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   81.7   0.0   4.3e-27   3.9e-23      33     131 .]      11      95 ..       2      95 .. 0.88

  Alignments for each domain:
  == domain 1  score: 81.7 bits;  conditional E-value: 4.3e-27
                  --HHHHHHTHTTTSEEEEEESBE...EEEHHHHHHHHGGGSSEEEEESHHHHH-TGGGSTT-TEE-HHHHHHHC.S-E.EEE-SSS--HHHHHHHHHH CS
  Oxidored_q6  33 dskeeeieakekeadvlvveGavtrkpkealellkelaekakaviavGtCAafGGipaaannpsvgeevgellevvpvdinipGCPphpeailetlla 130
                  ++         ++adv++v G++t+k+++al++++++++++++vi++G+CA  GG ++ +   sv   v+++++ vpvdi++pGCPp++ea++++ll+
   KOO23858.1  11 SP---------RQADVMIVAGTLTNKMAPALRKVYDQMPEPRYVISMGSCANGGGYYHYSY--SV---VRGCDRIVPVDIYVPGCPPTAEALIYGLLQ 94 
                  33.........49********************************************4433..33...469***********************9987 PP

                  H CS
  Oxidored_q6 131 l 131
                  l
   KOO23858.1  95 L 95 
                  5 PP

>> Secapin  Honey bee peptides
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.3   1.1e-05       0.1       2      25 ..      25      48 ..      24      73 .. 0.86
   2 ?   -0.7   1.6      0.14   1.3e+03      27      32 ..      79      84 ..      61      88 .. 0.80

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 1.1e-05
     Secapin  2 sndmqPLearsaDLvqePrYiidv 25
                 n m P   +  D ++ePrY+i +
  KOO23858.1 25 TNKMAPALRKVYDQMPEPRYVISM 48
                69999999999***********86 PP

  == domain 2  score: -0.7 bits;  conditional E-value: 0.14
     Secapin 27 PrCPPG 32
                P CPP 
  KOO23858.1 79 PGCPPT 84
                789996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (113 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       378  (0.0210832); expected 358.6 (0.02)
Passed bias filter:                      344  (0.0191868); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.39u 0.27s 00:00:00.66 Elapsed: 00:00:00.42
# Mc/sec: 804.95
//
Query:       KOO23859.1  [L=324]
Description: voltage-gated ion channel superfamily [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    5.1e-14   52.0   2.1    5.1e-14   52.0   2.1    2.1  2  Ion_trans_2  Ion channel


Domain annotation for each model (and alignments):
>> Ion_trans_2  Ion channel
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.5   0.4     0.067   1.2e+03      58      78 ..       2      22 ..       1      23 [. 0.86
   2 !   52.0   2.1   2.9e-18   5.1e-14       9      77 ..      91     155 ..      73     157 .. 0.83

  Alignments for each domain:
  == domain 1  score: -0.5 bits;  conditional E-value: 0.067
                 HHHHHHHHHHHHHHHHHHHHH CS
  Ion_trans_2 58 yillGlalfalflavlgkvlt 78
                 +++ Gl++++++l+++g+++ 
   KOO23859.1  2 LAIGGLLTVTAALNYTGTIMA 22
                 6889***********999875 PP

  == domain 2  score: 52.0 bits;  conditional E-value: 2.9e-18
                  HHHHHHHT....T---HHHHHHHHHHHHTTS----SSTT-----HHHHHHHHHHHHHHHHHHHHHHHHH CS
  Ion_trans_2   9 fgaviysleegwekwsfldalYfsfvtltTiGYGdivpetdagrlftivyillGlalfalflavlgkvl 77 
                     + ++     e+w++ld++Yf++++++T+GYGd++p++ +gr ++++++ + +a  +  +a l+++l
   KOO23859.1  91 MTLLGII----CEGWNLLDSVYFALISILTVGYGDYAPKSRVGRTLCTFFLPIACAAALGSIAALSSAL 155
                  3333333....5889**************************************9999998888887776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (324 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1064  (0.0593452); expected 358.6 (0.02)
Passed bias filter:                      779  (0.0434492); expected 358.6 (0.02)
Passed Vit filter:                        65  (0.00362541); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.53u 0.25s 00:00:00.78 Elapsed: 00:00:00.41
# Mc/sec: 2390.51
//
Query:       KOO23860.1  [L=761]
Description: intraflagellar transport protein 80-like protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.1e-13   51.3  20.3    0.00023   21.9   0.2    7.7  8  WD40           WD domain, G-beta repeat
    1.1e-10   41.6   6.6    0.00066   19.9   0.1    6.2  7  ANAPC4_WD40    Anaphase-promoting complex subunit 4 WD40 doma
     0.0031   15.6   0.6          2    6.3   0.1    3.0  3  IKI3           IKI3 family
      0.006   16.5   0.1       0.12   12.3   0.0    3.0  4  eIF2A          Eukaryotic translation initiation factor eIF2A
     0.0067   15.4   1.8       0.78    8.6   0.0    3.0  3  Ge1_WD40       WD40 region of Ge1, enhancer of mRNA-decapping
  ------ inclusion threshold ------
      0.012   14.7   1.9       0.52    9.3   0.2    3.5  3  Coatomer_WDAD  Coatomer WD associated region


Domain annotation for each model (and alignments):
>> WD40  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.0   0.4    0.0002      0.61       9      38 .]      17      46 ..       4      46 .. 0.80
   2 ?   -2.1   0.0       2.9   8.7e+03      25      36 ..      80      91 ..      70      91 .. 0.74
   3 !   21.9   0.2   7.6e-08   0.00023       8      38 .]     104     135 ..      96     135 .. 0.85
   4 ?   -1.6   0.0       2.1   6.2e+03       7      24 ..     140     162 ..     138     170 .. 0.70
   5 !   15.7   0.3     7e-06     0.021       4      38 .]     182     217 ..     179     217 .. 0.90
   6 !    6.6   0.0    0.0054        16      12      29 ..     232     249 ..     221     258 .. 0.85
   7 ?    1.8   0.1      0.18   5.2e+02      12      31 ..     272     291 ..     262     296 .. 0.78
   8 ?    2.1   0.0      0.14   4.1e+02      13      37 ..     504     527 ..     494     527 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.0002
                SSSS.EEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40  9 GHss.vtslafspdgawlasGsdDgtvriWd 38
                 Hs  vt+ ++s  + +++ G+ D++v +W+
  KOO23860.1 17 KHSEiVTGASWSGANELVTVGD-DKKVWLWN 46
                474467***********98777.*******8 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 2.9
                EEEEETTSEEEE CS
        WD40 25 lasGsdDgtvri 36
                ++ G+ Dg+ ++
  KOO23860.1 80 FVVGCTDGSFKL 91
                345877**9886 PP

  == domain 3  score: 21.9 bits;  conditional E-value: 7.6e-08
                 ESSSS.EEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40   8 tGHss.vtslafspdgawlasGsdDgtvriWd 38 
                  +H++ vt l++s dg+ la++++Dg v+ W+
  KOO23860.1 104 GAHNGaVTTLRWSNDGSSLATSGEDGQVKSWS 135
                 378555*************************5 PP

  == domain 4  score: -1.6 bits;  conditional E-value: 2.1
                 EESS.SS....EEEEEEETTSSE CS
        WD40   7 ltGH.ss....vtslafspdgaw 24 
                 ++ H       v+ l++s ++  
  KOO23860.1 140 FRSHlAQaegaVYTLCWSAESEQ 162
                 566662235679****9998765 PP

  == domain 5  score: 15.7 bits;  conditional E-value: 7e-06
                 EEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40   4 lrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 
                 ++ +++H  +v + +++   ++++sG++D++ r+Wd
  KOO23860.1 182 QTMWKAHdAPVLCADWNAVTNLIVSGGEDCKYRVWD 217
                 566899*888****99999999*************9 PP

  == domain 6  score: 6.6 bits;  conditional E-value: 0.0054
                 SEEEEEEETTSSEEEEEE CS
        WD40  12 svtslafspdgawlasGs 29 
                 s++++a+ p+g+++a Gs
  KOO23860.1 232 SISAVAWAPNGRYFAVGS 249
                 399************998 PP

  == domain 7  score: 1.8 bits;  conditional E-value: 0.18
                 SEEEEEEETTSSEEEEEETT CS
        WD40  12 svtslafspdgawlasGsdD 31 
                 sv  l++  d++ la+G+  
  KOO23860.1 272 SVMTLCWTADSTQLAAGCGS 291
                 4889***********99634 PP

  == domain 8  score: 2.1 bits;  conditional E-value: 0.14
                 EEEEEEETTSSEEEEEETTSEEEEE CS
        WD40  13 vtslafspdgawlasGsdDgtvriW 37 
                 v s+a++ + + la+ s Dg   +W
  KOO23860.1 504 VDSVAWNTETDALAAVS-DGQMLVW 527
                 568999999999*9999.****999 PP

>> ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.4   0.1      0.27     8e+02      33      68 ..      14      48 ..       3      70 .. 0.75
   2 ?    0.4   0.1      0.28   8.3e+02      50      66 ..      77      93 ..      25      98 .. 0.74
   3 !   19.9   0.1   2.2e-07   0.00066      28      90 ..     100     157 ..      93     159 .. 0.83
   4 !    7.6   0.0    0.0015       4.6      26      90 ..     181     239 ..     166     241 .. 0.88
   5 !    8.1   0.0    0.0011       3.3      28      57 ..     214     249 ..     213     259 .. 0.79
   6 !    7.8   0.0    0.0013       3.9      30      68 ..     261     300 ..     248     325 .. 0.72
   7 ?   -1.1   0.0      0.82   2.5e+03      40      61 ..     503     523 ..     481     527 .. 0.78

  Alignments for each domain:
  == domain 1  score: 0.4 bits;  conditional E-value: 0.27
  ANAPC4_WD40 33 eedkedsevrsLaWkpdgklLavaysdgevrlldae 68
                 +++k+++ v++ +W+  ++l  v+  d +v l ++e
   KOO23860.1 14 NTKKHSEIVTGASWSGANELVTVGD-DKKVWLWNVE 48
                 56788888999****9999988874.6677777776 PP

  == domain 2  score: 0.4 bits;  conditional E-value: 0.28
  ANAPC4_WD40 50 gklLavaysdgevrlld 66
                  ++++v++ dg+ +l++
   KOO23860.1 77 SEVFVVGCTDGSFKLVS 93
                 46899999999999987 PP

  == domain 3  score: 19.9 bits;  conditional E-value: 2.2e-07
  ANAPC4_WD40  28 rvwtleedkedsevrsLaWkpdgklLavaysdgevrlldaesgkvvhslsvksekavtclgWg 90 
                  +v+   + ++++ v+ L+W++dg+ La + +dg+v+  +  +g   ++l  ++  av +l W+
   KOO23860.1 100 KVV---TGAHNGAVTTLRWSNDGSSLATSGEDGQVKSWS-RNGMFRSHLAQAEG-AVYTLCWS 157
                  344...45899*************************986.68888888877777.69999997 PP

  == domain 4  score: 7.6 bits;  conditional E-value: 0.0015
  ANAPC4_WD40  26 gqrvwtleedkedsevrsLaWkpdgklLavaysdgevrlldaesgkvvhslsvksekavtclgWg 90 
                   q +w++    +d  v +  W+   +l++ + +d + r+ d +  ++  s+  + +  ++ + W+
   KOO23860.1 181 KQTMWKA----HDAPVLCADWNAVTNLIVSGGEDCKYRVWDCYGRQLYASSASEYS--ISAVAWA 239
                  5667777....999*****************************9999988877777..9***997 PP

  == domain 5  score: 8.1 bits;  conditional E-value: 0.0011
  ANAPC4_WD40  28 rvwtl......eedkedsevrsLaWkpdgklLavay 57 
                  rvw+       ++++++ +++++aW p+g+ +av+ 
   KOO23860.1 214 RVWDCygrqlyASSASEYSISAVAWAPNGRYFAVGS 249
                  566666666666788999****************95 PP

  == domain 6  score: 7.8 bits;  conditional E-value: 0.0013
  ANAPC4_WD40  30 wtl.eedkedsevrsLaWkpdgklLavaysdgevrlldae 68 
                  w+   e+ e ++v  L+W  d + La ++  g+v + +  
   KOO23860.1 261 WSHsREAPEVGSVMTLCWTADSTQLAAGCGSGAVLFGQLV 300
                  5553344556799*******************99765554 PP

  == domain 7  score: -1.1 bits;  conditional E-value: 0.82
  ANAPC4_WD40  40 evrsLaWkpdgklLavaysdge 61 
                   v s+aW+ +   La  +sdg+
   KOO23860.1 503 MVDSVAWNTETDALAA-VSDGQ 523
                  5788899988888874.45555 PP

>> IKI3  IKI3 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.3   0.1   0.00067         2     238     317 ..      89     161 ..      77     172 .. 0.80
   2 !    5.8   0.0   0.00095       2.8     224     322 ..     199     288 ..     195     300 .. 0.81
   3 ?   -1.4   0.0      0.14   4.1e+02     306     331 ..     503     528 ..     453     538 .. 0.83

  Alignments for each domain:
  == domain 1  score: 6.3 bits;  conditional E-value: 0.00067
                 XXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXX CS
        IKI3 238 lrvyeregaLdsvse.kvdgleeaLaWrPsGsliAstqrkkdksldvvfFErNGLrhgefslrlekeeeevqsLaWsadSe 317
                 ++  +++g +++v   + +g   +L W   Gs +A++ ++     +v  + rNG+ ++++     ++e  v  L+Wsa+Se
  KOO23860.1  89 FKLVSKSGRVEKVVTgAHNGAVTTLRWSNDGSSLATSGED--G--QVKSWSRNGMFRSHLA----QAEGAVYTLCWSAESE 161
                 6777888998888777899999999999999999998762..2..5678999999777665....57899999*****998 PP

  == domain 2  score: 5.8 bits;  conditional E-value: 0.00095
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXXXXXXX CS
        IKI3 224 avssleaetgerralrvyeregaLdsvsekvdgleeaLaWrPsGsliAstqrkkdksldvvfFErNGLrhgefslrlekeeeevqsLaWsadSevLavr 322
                 av+ l    ge  + rv++  g   ++s +++ + +a+aW P+G   A+   +      + +  + G  h+    r+ +e  +v  L+W adS+ La+ 
  KOO23860.1 199 AVTNLIVSGGEDCKYRVWDCYGRQLYASSASEYSISAVAWAPNGRYFAVGSFNM-----LRLCDKAGWSHS----REAPEVGSVMTLCWTADSTQLAAG 288
                 555555566678899******998888888899999************987644.....458999999997....5668889999********999985 PP

  == domain 3  score: -1.4 bits;  conditional E-value: 0.14
                 XXXXXXXXXXXXXXXXXXXXXXXXXX CS
        IKI3 306 evqsLaWsadSevLavrledrvqlwt 331
                  v s+aW+++ ++La++   ++ +w+
  KOO23860.1 503 MVDSVAWNTETDALAAVSDGQMLVWF 528
                 45899999999999999888888886 PP

>> eIF2A  Eukaryotic translation initiation factor eIF2A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.2   0.0      0.26   7.7e+02     132     161 ..      94     125 ..      79     139 .. 0.64
   2 !   12.3   0.0   3.9e-05      0.12      57     159 ..     146     246 ..     111     255 .. 0.88
   3 ?   -3.1   0.0         2   5.8e+03     170     188 ..     392     410 ..     383     413 .. 0.82
   4 ?   -2.4   0.0       1.3   3.8e+03      40      77 ..     485     519 ..     479     526 .. 0.64

  Alignments for each domain:
  == domain 1  score: -0.2 bits;  conditional E-value: 0.26
                 TT.TTEEEEEEE-T.T--EEEE-TTSSEEEEE CS
       eIF2A 132 vk.kkkkiakaeaa.natlvewspdgryvlTa 161
                 ++ +++k+ +  +    t++ ws+dg+ ++T+
  KOO23860.1  94 KSgRVEKVVTGAHNgAVTTLRWSNDGSSLATS 125
                 44444554444443044667888888877776 PP

  == domain 2  score: 12.3 bits;  conditional E-value: 3.9e-05
                 ESSS.EEEEEE-TTSS-EEEEESSSSCEEEEEECSCEEEEEEEEES--EEEE-TTSSEEEEE-TTSSS-EEEEEETTTTEEEEE.EE-TT--EEEE-TT CS
       eIF2A  57 kkegpihdvaWspkskefaviyGkmpakvslfdlkvkviskleeqkrNtiffspkgklvllaGfgnlaGeleiwdvkkkkkiak.aeaanatlvewspd 154
                 + eg ++ ++Ws +s++++  +Gk      l  +  + + k + ++  +  +++  +l++ +G  +   +  +wd   ++ +a+ a ++  + v w p+
  KOO23860.1 146 QAEGAVYTLCWSAESEQILFSNGKHLVIRPLTPSSKQTMWKAHDAPVLCADWNAVTNLIVSGG-EDC--KYRVWDCYGRQLYASsASEYSISAVAWAPN 241
                 67999********************99999999999************************998.444..899*****7777665156677799****** PP

                 SSEEE CS
       eIF2A 155 gryvl 159
                 gry++
  KOO23860.1 242 GRYFA 246
                 ***97 PP

  == domain 3  score: -3.1 bits;  conditional E-value: 2
                 S-EEEEEETTTEEEEEEE- CS
       eIF2A 170 dngfkiwsysGklvykkef 188
                  ng+++ +y+G++v++ +f
  KOO23860.1 392 MNGLQVLNYDGRVVSQPKF 410
                 5999*********998776 PP

  == domain 4  score: -2.4 bits;  conditional E-value: 1.3
                 EEEESSSTT--EEECCEESSS.EEEEEE-TTSS-EEEE CS
       eIF2A  40 elyliklkkkksevvelkkegpihdvaWspkskefavi 77 
                 +lyl+   ++ +e  +l+    +  vaW+++ + +a +
  KOO23860.1 485 DLYLT-PVQGAQELYKLHIM--VDSVAWNTETDALAAV 519
                 56666.44445556666444..8889999988887655 PP

>> Ge1_WD40  WD40 region of Ge1, enhancer of mRNA-decapping protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.6   0.0   0.00026      0.78     182     214 ..     102     134 ..      71     140 .. 0.78
   2 !    4.3   0.1    0.0055        16     190     250 ..     273     331 ..     258     397 .. 0.73
   3 ?   -0.7   0.1      0.18   5.4e+02     272     314 ..     606     646 ..     604     649 .. 0.73

  Alignments for each domain:
  == domain 1  score: 8.6 bits;  conditional E-value: 0.00026
    Ge1_WD40 182 lkieehsliveaafspdGtalatasedGevkff 214
                 +   ++  +++  +s dG +lat+ edG+vk +
  KOO23860.1 102 VTGAHNGAVTTLRWSNDGSSLATSGEDGQVKSW 134
                 4444556899999******************87 PP

  == domain 2  score: 4.3 bits;  conditional E-value: 0.0055
    Ge1_WD40 190 iveaafspdGtalatasedGevkffqvyledeeeprCLh.eWkPhdGkslssllfldnhkee 250
                 +++  +++d t la+ +  G v f q+   +     C h e +  + +sl+ l   d+ +e 
  KOO23860.1 273 VMTLCWTADSTQLAAGCGSGAVLFGQLVHREV---SCAHlEVRQEEPHSLTVLNVTDDTRED 331
                 6777889*******************976554...566655666666678888788877764 PP

  == domain 3  score: -0.7 bits;  conditional E-value: 0.18
    Ge1_WD40 272 WscelWtClqtikfapsiesslkaevlkaeldlsaeyLllsdl 314
                  s+elW Cl ++ +a +  +   aev  a +++  + L +  +
  KOO23860.1 606 KSTELWACLAAMAIAGK--ELHTAEVAYAAIEQVDKLLYMCHI 646
                 589********999988..455566667777777776666665 PP

>> Coatomer_WDAD  Coatomer WD associated region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.9   0.0     0.031        91      32      84 ..     230     287 ..     219     405 .. 0.84
   2 ?   -0.5   0.0      0.16   4.8e+02     119     169 ..     477     526 ..     440     547 .. 0.78
   3 ?    9.3   0.2   0.00017      0.52     338     386 ..     597     645 ..     591     653 .. 0.91

  Alignments for each domain:
  == domain 1  score: 1.9 bits;  conditional E-value: 0.031
                    XXXXXXXXXXXXXXXXXXXXXXXXXXXX....XXXXXXXXXXXXXXXXXXX.XXXXXX CS
  Coatomer_WDAD  32 eiypqslshnpngrfvlVcgdgeyiiyt....alalrnkaygkgldfvwvs.snrfav 84 
                    e  + +++  pngr+++V   +   ++     + + +  + g+ ++ +w + s++ a+
     KOO23860.1 230 EYSISAVAWAPNGRYFAVGSFNMLRLCDkagwSHSREAPEVGSVMTLCWTAdSTQLAA 287
                    55588899999******99999999988444444444556788888899887777775 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 0.16
                    XXXXXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
  Coatomer_WDAD 119 lLgvksegsvsfYDweqgklvrridvkkvknVvwsddgelvalvskdtvyi 169
                    l +v+++  +++  ++  + + ++++  v  V w+ + + +a vs+ ++ +
     KOO23860.1 477 LVVVDKNRDLYLTPVQGAQELYKLHIM-VDSVAWNTETDALAAVSDGQMLV 526
                    666777777888888889999999999.79999999999999998877766 PP

  == domain 3  score: 9.3 bits;  conditional E-value: 0.00017
                    HHHHHHHHH--HHHHHHHHHHHHHTT-HHHHHHHHHHTT-HHHHHHHHH CS
  Coatomer_WDAD 338 lAlelakelddeekWkkLgdaAlsqgniklaeeayqkakdfdkLllLyl 386
                     Al l++  ++ e W  L+ +A++  +++ ae ay  ++++dkLl +  
     KOO23860.1 597 PALRLCRYVKSTELWACLAAMAIAGKELHTAEVAYAAIEQVDKLLYMCH 645
                    589999999***********************************98765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (761 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       584  (0.0325729); expected 358.6 (0.02)
Passed bias filter:                      434  (0.0242066); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.70u 0.30s 00:00:01.00 Elapsed: 00:00:00.48
# Mc/sec: 4788.94
//
Query:       KOO23861.1  [L=312]
Description: hypothetical protein Ctob_003458 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
  ------ inclusion threshold ------
       0.04   13.0  21.0        0.5    9.4   3.0    2.3  2  Atg14           Vacuolar sorting 38 and autophagy-related sub
       0.24   11.9   2.1        2.9    8.4   0.3    2.8  3  NPV_P10         Nucleopolyhedrovirus P10 protein
       0.58   10.2   5.4        1.3    9.1   0.3    2.8  2  DUF1664         Protein of unknown function (DUF1664)
       0.79   10.1   9.5          4    7.8   0.1    3.4  3  BLOC1_2         Biogenesis of lysosome-related organelles com
        1.9    7.8  27.5       0.74    9.1  21.8    2.4  2  DUF4407         Domain of unknown function (DUF4407)
        1.9    7.8  23.7       0.83    9.0   3.8    2.2  2  GAS             Growth-arrest specific micro-tubule binding
        3.2    7.3   8.9        1.7    8.2   0.1    2.7  3  Fzo_mitofusin   fzo-like conserved region
        5.7    6.7   9.6        5.9    6.7   1.9    3.2  2  Lectin_N        Hepatic lectin, N-terminal domain
        9.9    7.1  23.1        8.4    7.4   0.5    3.2  3  PRKG1_interact  cGMP-dependent protein kinase interacting dom


Domain annotation for each model (and alignments):
>> Atg14  Vacuolar sorting 38 and autophagy-related subunit 14
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   3.0   0.00025       0.5      26     125 ..     100     204 ..      86     218 .. 0.80
   2 ?    7.7  11.8   0.00081       1.6      85     163 ..     224     304 ..     204     308 .. 0.86

  Alignments for each domain:
  == domain 1  score: 9.4 bits;  conditional E-value: 0.00025
       Atg14  26 elrerlaklksekeslkkkiekalegke.....eaeqledkiknkkakleelksliadlrerlqelkdklsqlkkeieekkkklaklsdklkkRrsdle 119
                 el++++++l  e   +++++++ l  ++     +ae l+++++++++ +++l ++ a+ +++ ++l + +  l++e+e  +++l+++ +  +kR  ++ 
  KOO23861.1 100 ELHKQVQSLSDELRLIRSQLTQRLDAETiatraAAEGLAAAEQTHAEVASRLEARCAEGEAKRALLAEMVAGLRAELEGVRAELESMCEGAAKREGEAG 198
                 778888888888888899999999999877777888888888888888999999999999999999999999999999999888888888889999887 PP

       Atg14 120 slqnel 125
                  l+  l
  KOO23861.1 199 GLRALL 204
                 776655 PP

  == domain 2  score: 7.7 bits;  conditional E-value: 0.00081
       Atg14  85 elkdklsqlkkeieekkkklaklsdklkkRrsdlesl..qneleerrkkqiaklqdaikrieqklsslssktlesrsslcs 163
                 +l+  +++ kke+++ k+++a++ + +k  r +le++      +e+r++++++l +a kr+e+  ++l+  ++e +s+ ++
  KOO23861.1 224 KLSGAQEKEKKEMAALKAEVARQAELVKALRTKLEAHaaDADAHEARARELESLKTASKRHERRAQQLEEGSAELQSEVLR 304
                 566678899*******************888887765116789******************************99999887 PP

>> NPV_P10  Nucleopolyhedrovirus P10 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.4   0.3    0.0015       2.9      16      59 ..      77     120 ..      66     129 .. 0.66
   2 ?   -3.4   0.0       6.9   1.4e+04      39      52 ..     171     184 ..     165     188 .. 0.50
   3 ?    2.1   0.1      0.14   2.8e+02      40      59 ..     239     258 ..     219     300 .. 0.68

  Alignments for each domain:
  == domain 1  score: 8.4 bits;  conditional E-value: 0.0015
     NPV_P10  16 vddkVdalqqqvddvqenlpdvtelnekLdaqsaqLaeletkve 59 
                     ++ l ++  +++e+ +  +el+++++++s++L  + ++++
  KOO23861.1  77 YRAAITELTNRCVQLEEQAKPASELHKQVQSLSDELRLIRSQLT 120
                 55556666666667777777777777777777777666655544 PP

  == domain 2  score: -3.4 bits;  conditional E-value: 6.9
     NPV_P10  39 elnekLdaqsaqLa 52 
                  l ++L++  a+L+
  KOO23861.1 171 GLRAELEGVRAELE 184
                 34444555555544 PP

  == domain 3  score: 2.1 bits;  conditional E-value: 0.14
     NPV_P10  40 lnekLdaqsaqLaeletkve 59 
                 l++++ +q++ +++l tk+e
  KOO23861.1 239 LKAEVARQAELVKALRTKLE 258
                 44444444444444444443 PP

>> DUF1664  Protein of unknown function (DUF1664)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.1   0.3   0.00064       1.3      44     118 ..      99     177 ..      92     183 .. 0.74
   2 ?    2.3   0.7     0.081   1.6e+02      54     101 ..     222     269 ..     214     302 .. 0.64

  Alignments for each domain:
  == domain 1  score: 9.1 bits;  conditional E-value: 0.00064
     DUF1664  44 esvskqleqvseslaatkrhLssridrvdkk...ldeqkeiskeikeevt.evredlseigedvesvkeavegleskle 118
                 +++ kq++++s++l+  + +L++r+d          e  ++++++++ev+ +++   +e + +   + e+v gl ++le
  KOO23861.1  99 SELHKQVQSLSDELRLIRSQLTQRLDAETIAtraAAEGLAAAEQTHAEVAsRLEARCAEGEAKRALLAEMVAGLRAELE 177
                 6789*********************975544000445566778888888624667777777777788888888887776 PP

  == domain 2  score: 2.3 bits;  conditional E-value: 0.081
     DUF1664  54 seslaatkrhLssridrvdkkldeqkeiskeikeevtevredlseige 101
                 s +l+ ++++ +++++ + +++  q+e+ k+++ ++++   d ++ + 
  KOO23861.1 222 SRKLSGAQEKEKKEMAALKAEVARQAELVKALRTKLEAHAADADAHEA 269
                 566666777777777777777777777777777777666555544433 PP

>> BLOC1_2  Biogenesis of lysosome-related organelles complex-1 subunit 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.8   0.1     0.002         4      36      76 ..      81     121 ..      74     127 .. 0.89
   2 ?   -0.8   0.0      0.98     2e+03      39      55 ..     165     181 ..     141     197 .. 0.62
   3 ?    4.1   3.1     0.028        55      36      93 ..     243     300 ..     220     303 .. 0.69

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 0.002
     BLOC1_2  36 ykklkdvaaslekkleklnekyeelqpylqqidqiekqvte 76 
                 +++l++++ +le++++  +e+++++q++ +++  i  q+t+
  KOO23861.1  81 ITELTNRCVQLEEQAKPASELHKQVQSLSDELRLIRSQLTQ 121
                 6789999999***********************99999885 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 0.98
     BLOC1_2  39 lkdvaaslekkleklne 55 
                 l++++a+l+++le +++
  KOO23861.1 165 LAEMVAGLRAELEGVRA 181
                 34444444444444443 PP

  == domain 3  score: 4.1 bits;  conditional E-value: 0.028
     BLOC1_2  36 ykklkdvaaslekkleklnekyeelqpylqqidqiekqvteLeeavseLDeyskeLEa 93 
                 ++  ++ ++ l++kle+  +  ++ +   ++++ +++  ++ e  +++L+e s eL++
  KOO23861.1 243 VARQAELVKALRTKLEAHAADADAHEARARELESLKTASKRHERRAQQLEEGSAELQS 300
                 4445566677777777777777777777777777777777777777777777777766 PP

>> DUF4407  Domain of unknown function (DUF4407)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.8   1.8     0.061   1.2e+02     184     239 ..      73     125 ..      42     139 .. 0.59
   2 ?    9.1  21.8   0.00037      0.74     106     258 ..     126     282 ..     115     291 .. 0.83

  Alignments for each domain:
  == domain 1  score: 1.8 bits;  conditional E-value: 0.061
     DUF4407 184 aakekkaqldaaqaelaelkakldatarlaalraelaeleaerakeraasqaaaaa 239
                  +++ +a++++++++  +l+++   ++  ++l ++ ++l +e++ +r++ +++ +a
  KOO23861.1  73 DCRAYRAAITELTNRCVQLEEQ---AKPASELHKQVQSLSDELRLIRSQLTQRLDA 125
                 4555666666666666666666...3334444444444444444444444443332 PP

  == domain 2  score: 9.1 bits;  conditional E-value: 0.00037
     DUF4407 106 keIdaelaeeqqeeakelkeqlaaaltaelaeleaqiaalqaeidaaearldalraeaqkeldgtk.gtgttgvaGkgpaakekkaqldaaqaelaelk 203
                 + I+++ a+e  ++a++  +++a+ l+a+ ae ea++a l + ++ ++a+l+  rae+++ ++g+   +g+    G  +   ++++++++a  e  +l+
  KOO23861.1 126 ETIATRAAAEGLAAAEQTHAEVASRLEARCAEGEAKRALLAEMVAGLRAELEGVRAELESMCEGAAkREGE--AGGLRALLLRAQEEAAEAHGESGALS 222
                 6788999999999999999999999***************************************8743332..23555556667777777777777777 PP

     DUF4407 204 akld.....atarlaalraelaeleaerakeraasqaaaaaddGllarlealdrltkeda 258
                 +kl+     +++++aal+ae a+ ++  ++ r++ +a+aa++d   ar + l+ l ++++
  KOO23861.1 223 RKLSgaqekEKKEMAALKAEVARQAELVKALRTKLEAHAADADAHEARARELESLKTASK 282
                 777788888999999999999999999999999999999999999999999999987765 PP

>> GAS  Growth-arrest specific micro-tubule binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.0   3.8   0.00042      0.83      58     173 ..      76     191 ..      66     210 .. 0.74
   2 ?    4.3  12.4     0.011        22      41     112 ..     228     299 ..     207     304 .. 0.77

  Alignments for each domain:
  == domain 1  score: 9.0 bits;  conditional E-value: 0.00042
         GAS  58 rlkepLkkaeeeveeLrkqlknyekdkqslk....nlkarlkelekelkdlkwehevleqrfekvekerdelykkfeaaiqevqqktglknllLekklk 152
                  ++  ++++++ + +L++q+k  ++  ++ +    +l+   ++l++ l + +   +   + ++++e+   e+ ++ ea       + + k  lL  +++
  KOO23861.1  76 AYRAAITELTNRCVQLEEQAKPASELHKQVQslsdELRLIRSQLTQRLDAETIATRAAAEGLAAAEQTHAEVASRLEARCA----EGEAKRALLAEMVA 170
                 566677777777777777777665555555500024566667777778888888888888888888888888888888665....5788999******* PP

         GAS 153 alqeelEkkeaqleevlaaan 173
                  l++elE   a+le++ + a 
  KOO23861.1 171 GLRAELEGVRAELESMCEGAA 191
                 **************9987665 PP

  == domain 2  score: 4.3 bits;  conditional E-value: 0.011
         GAS  41 keernekelseisqenkrlkepLkkaeeeveeLrkqlknyekdkqslknlkarlkelekelkdlkwehevle 112
                  +e+ +ke++++++e  r  e +k+++ ++e   +++  +e    +l++lk+  k+ e+  ++l++ +  l+
  KOO23861.1 228 AQEKEKKEMAALKAEVARQAELVKALRTKLEAHAADADAHEARARELESLKTASKRHERRAQQLEEGSAELQ 299
                 567778888888888888888888888888888888888888888888888888888888888777666665 PP

>> Fzo_mitofusin  fzo-like conserved region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.2   0.1   0.00083       1.7      91     157 ..      50     117 ..      32     121 .. 0.78
   2 ?   -1.9   0.0       1.1   2.2e+03      99     119 ..     165     185 ..     138     202 .. 0.62
   3 ?    1.6   3.3     0.091   1.8e+02      99     155 ..     239     298 ..     221     304 .. 0.72

  Alignments for each domain:
  == domain 1  score: 8.2 bits;  conditional E-value: 0.00083
  Fzo_mitofusin  91 cshqvqq.elsstfarlcqqvdetekeleeeikelekeiekleevqkkakllrnkaslleseLekfee 157
                     s  +++  ++s++  l  + d   +  ++ i+el++++ +lee  k a  l+++ ++l+ eL+  ++
     KOO23861.1  50 NSFALEKtAIESVHGGLVVSLDADCRAYRAAITELTNRCVQLEEQAKPASELHKQVQSLSDELRLIRS 117
                    5555544356777888888888888888999*****************************99986655 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 1.1
  Fzo_mitofusin  99 lsstfarlcqqvdetekelee 119
                    l++++a l+++ + +++ele+
     KOO23861.1 165 LAEMVAGLRAELEGVRAELES 185
                    334444444444444444443 PP

  == domain 3  score: 1.6 bits;  conditional E-value: 0.091
  Fzo_mitofusin  99 lsstfarlcqqvdetekeleeei...kelekeiekleevqkkakllrnkaslleseLekf 155
                    l+  +ar  + v+  +++le++    ++ e++ ++le++++ +k    +a++le+  ++ 
     KOO23861.1 239 LKAEVARQAELVKALRTKLEAHAadaDAHEARARELESLKTASKRHERRAQQLEEGSAEL 298
                    45566666777888888888765111456778999**********99***9999865555 PP

>> Lectin_N  Hepatic lectin, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.8   0.5     0.047        94      98     128 ..      90     119 ..      63     123 .. 0.64
   2 ?    6.7   1.9    0.0029       5.9      58     108 ..     219     269 ..     208     302 .. 0.90

  Alignments for each domain:
  == domain 1  score: 2.8 bits;  conditional E-value: 0.047
    Lectin_N  98 kkqqdlkadhselllhvkqlvkdLrtLsCql 128
                 + +++  +  sel  +v+ l+ +Lr +  ql
  KOO23861.1  90 QLEEQA-KPASELHKQVQSLSDELRLIRSQL 119
                 333333.346888888888888888888777 PP

  == domain 2  score: 6.7 bits;  conditional E-value: 0.0029
    Lectin_N  58 etLketfsnfssstlaeiqalssqggslsekvtsleaklekkqqdlkadhs 108
                  +L+ ++s   ++ + e+ al+++  +  e v+ l++kle + +d +a  +
  KOO23861.1 219 GALSRKLSGAQEKEKKEMAALKAEVARQAELVKALRTKLEAHAADADAHEA 269
                 68999999999******************************9999888665 PP

>> PRKG1_interact  cGMP-dependent protein kinase interacting domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.4   0.5    0.0042       8.4      61      95 ..      83     116 ..      71     121 .. 0.84
   2 ?    3.3   5.0     0.077   1.5e+02       7      89 ..      92     182 ..      90     227 .. 0.66
   3 ?    6.3  10.4    0.0089        18       7      77 ..     230     299 ..     224     305 .. 0.89

  Alignments for each domain:
  == domain 1  score: 7.4 bits;  conditional E-value: 0.0042
  PRKG1_interact  61 slerkiseleeelkeleeLraenqrLkdEngALiR 95 
                     +l +++ +lee++k  +eL ++ q L dE + LiR
      KOO23861.1  83 ELTNRCVQLEEQAKPASELHKQVQSLSDELR-LIR 116
                     56788999*********************76.666 PP

  == domain 2  score: 3.3 bits;  conditional E-value: 0.077
  PRKG1_interact   7 eeekeenerLkreLeelekelselkseleklkqqrqe.svskrssllelekre...rrslerkiseleeel....keleeLraenqrLkdE 89 
                     ee+ +  ++L +++++l+ el+ ++s+l++    ++    ++ + l+ +e+++    + le +++e e +     + ++ Lrae +  ++E
      KOO23861.1  92 EEQAKPASELHKQVQSLSDELRLIRSQLTQRLDAETIaTRAAAEGLAAAEQTHaevASRLEARCAEGEAKRallaEMVAGLRAELEGVRAE 182
                     5666777889999999999999999998775544222122222223333333200134555666655555433444445555555555555 PP

  == domain 3  score: 6.3 bits;  conditional E-value: 0.0089
  PRKG1_interact   7 eeekeenerLkreLeelekelselkseleklkqqrqesvskrssllelekrerrslerkiseleeelkele 77 
                     e+ek+e   Lk+e+ +  + ++ l+++le  +  + +  ++r++ le  k+ ++  er++++lee   el+
      KOO23861.1 230 EKEKKEMAALKAEVARQAELVKALRTKLEAHA-ADADAHEARARELESLKTASKRHERRAQQLEEGSAELQ 299
                     899**************************987.55788889999999999999999*******99877765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (312 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1856  (0.103519); expected 358.6 (0.02)
Passed bias filter:                      649  (0.0361983); expected 358.6 (0.02)
Passed Vit filter:                        84  (0.00468515); expected 17.9 (0.001)
Passed Fwd filter:                        38  (0.00211947); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.89u 0.30s 00:00:01.19 Elapsed: 00:00:00.49
# Mc/sec: 1930.89
//
Query:       KOO23862.1  [L=76]
Description: NADH dehydrogenase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (76 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       283  (0.0157845); expected 358.6 (0.02)
Passed bias filter:                      231  (0.0128842); expected 358.6 (0.02)
Passed Vit filter:                         9  (0.00050198); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.23s 00:00:00.59 Elapsed: 00:00:00.40
# Mc/sec: 567.95
//
Query:       KOO23863.1  [L=614]
Description: transmembrane 9 superfamily member 4-like protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   9.4e-192  638.3   9.6   5.1e-187  622.7   7.0    2.4  3  EMP70            Endomembrane protein 70
  ------ inclusion threshold ------
        7.9    6.6   0.0        3.7    7.6   6.0    5.2  5  Phage_holin_3_6  Putative Actinobacterial Holin-X, holin supe


Domain annotation for each model (and alignments):
>> EMP70  Endomembrane protein 70
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.7   0.0   9.9e-10   8.8e-06       1      39 [.      52      88 ..      52      90 .. 0.89
   2 !  622.7   7.0  5.7e-191  5.1e-187      70     519 .]      89     571 ..      88     571 .. 0.92
   3 ?   -7.6   4.6         2   1.8e+04     368     380 ..     580     592 ..     575     607 .. 0.49

  Alignments for each domain:
  == domain 1  score: 24.7 bits;  conditional E-value: 9.9e-10
       EMP70  1 pydYydllpfCkpeeekkkesesLgevLrGdrienspye 39
                pydYy+ lpfCkp++  +++ e+LgevL G  i+ns ye
  KOO23863.1 52 PYDYYT-LPFCKPDT-VHNSVENLGEVLHGSVIQNSAYE 88
                8*****.88****74.557779***************97 PP

  == domain 2  score: 622.7 bits;  conditional E-value: 5.7e-191
       EMP70  70 ngYvvnwlvDnLPvatsfvs...........aaGfplGfvdkee....ekekyylnnhldfviryhkakeeekkrivgfevepksvkde.e...eeeCp 149
                 ++Y+v++++DnLP+at++++            +G+plGfv++ e    + +++y++nhl+fv+++hk+++ +++rivgfevep svk++ +   +   +
  KOO23863.1  89 EDYRVHLIMDNLPAATKMIRempngntitmyDRGYPLGFVGSAErpgtTPGTPYMYNHLRFVVKFHKEDSFSGSRIVGFEVEPLSVKHQyKgsfT--TD 185
                 79*************877778888888888889********8834566889****************999999***************9654221..22 PP

       EMP70 150 kea.e.leleee..............k.....keeeteipftYsVkwresedvewasRwdlylesvedskihwfsiinslvivlllslivavillrtlr 227
                  ++ + l+                  k     +++++e+++tY+ kw+ s+ ++wasRwdlyl  + d++ihwfsiinsl ivlll++iva+i++rtlr
  KOO23863.1 186 MSKlNlLT---VpvgpdlppqpvgvvKadatpSASDMELIYTYDTKWEFSD-IRWASRWDLYL-YMGDDQIHWFSIINSLAIVLLLTGIVAMIMMRTLR 279
                 11112222...1222334554555551556677799**************7.***********.79999****************************** PP

       EMP70 228 kdiaryneeeeeeaqeesgWKlvhgdVfrpPknsllLsvlvGsGvqlllmalvtlllallgflspsnrgslltvalllyvllgliaGYvsarlyktfgg 326
                 +d++ryne+++e++qeesgWKlvh+dVfrpP n+ lL+  +G+G+qll+m+++ +++a+lgflsp+nrg+llt++lll+vl+g+ aGY++a +yk+++g
  KOO23863.1 280 RDFNRYNEQDKEDLQEESGWKLVHADVFRPPPNAILLCSSLGMGMQLLVMSTIAIFCAMLGFLSPANRGGLLTAVLLLFVLMGVPAGYYAANTYKSLKG 378
                 ********77777************************************************************************************** PP

       EMP70 327 ekwkkntlltalllpgllflvffllnlilwakessgalpfgtlvlllllwflisvPlvliGsllgfkkkaiehpvrtnqiprqipkqpwylkpllsvll 425
                 ++wk++t+lta+l+pg++  +ff+ln+++w+++ssga+pf+t+++lll+wf+isvPlv++G+++gfk+k  ++pvrtn+iprqip+q+wy++  + vl+
  KOO23863.1 379 TEWKTTTVLTATLFPGIMAGIFFVLNFFIWSQGSSGAIPFTTMFILLLMWFGISVPLVFLGAFFGFKAKLKDNPVRTNEIPRQIPSQAWYMSGTFNVLM 477
                 *******************************************************************8766**************************** PP

       EMP70 426 gGilpFgaifielyfilsslwlekiYylfgfLflvfllliittaevtilltYfqLcaedyrWwWrSflvggssalYvflysiyYyftklkisgf 519
                 gGilpFgaifiel+fi++s+wl+++Yy+fgfL+lv+l+l+it+ae++i+l+YfqLc+edy+WwWrSfl++gss+lY+f+ysi+Y+ft+l+i gf
  KOO23863.1 478 GGILPFGAIFIELFFIMTSVWLQRFYYVFGFLALVLLILVITCAEISIVLCYFQLCNEDYHWWWRSFLTAGSSGLYLFAYSIMYFFTQLDIIGF 571
                 ******************************************************************************************9876 PP

  == domain 3  score: -7.6 bits;  conditional E-value: 2
       EMP70 368 tlvlllllwflis 380
                 +++++ +l+fli+
  KOO23863.1 580 YMFVFAMLFFLIT 592
                 3333333333332 PP

>> Phage_holin_3_6  Putative Actinobacterial Holin-X, holin superfamily III
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6   0.0   0.00088       7.9      65     106 ..     252     290 ..     240     297 .. 0.74
   2 ?    7.6   6.0   0.00042       3.7      36      94 ..     316     379 ..     311     391 .. 0.83
   3 ?   -4.0   5.4       1.6   1.4e+04      61      86 ..     415     438 ..     382     455 .. 0.47
   4 ?   -1.0   8.0      0.19   1.7e+03      38      79 ..     473     518 ..     465     532 .. 0.56
   5 ?   -1.4   5.4      0.25   2.3e+03      58      85 ..     566     597 ..     542     612 .. 0.43

  Alignments for each domain:
  == domain 1  score: 6.6 bits;  conditional E-value: 0.00088
  Phage_holin_3_6  65 lwlaalivaavllvlagvlalvglkklkkakplpertieelk 106
                       w++ +   a++l+l+g++a++++++l++    + r  e+ k
       KOO23863.1 252 HWFSIINSLAIVLLLTGIVAMIMMRTLRR---DFNRYNEQDK 290
                      67777778899999**********99999...3555555544 PP

  == domain 2  score: 7.6 bits;  conditional E-value: 0.00042
  Phage_holin_3_6  36 gagllgaagvlallalllllvalalala.a....lwlaalivaavllvlagvlalvglkklkka 94 
                      +   lg+++ l++++ +++++a++ +l+ a    l  a l++++++ v ag  a+ ++k lk+ 
       KOO23863.1 316 LCSSLGMGMQLLVMSTIAIFCAMLGFLSpAnrggLLTAVLLLFVLMGVPAGYYAANTYKSLKGT 379
                      55668899999999999999999999988889988899999*******************9984 PP

  == domain 3  score: -4.0 bits;  conditional E-value: 1.6
  Phage_holin_3_6  61 alaalwlaalivaavllvlagvlalv 86 
                      a+  +    +i+ ++++ + + l+++
       KOO23863.1 415 AI--PFTTMFILLLMWFGISVPLVFL 438
                      22..3333333333333333333322 PP

  == domain 4  score: -1.0 bits;  conditional E-value: 0.19
  Phage_holin_3_6  38 gllgaagvlallalllllval..alala.a.lwlaalivaavllvl 79 
                        ++++g+l + a+++ l+++   ++l+ + + +++l + ++ lv+
       KOO23863.1 473 FNVLMGGILPFGAIFIELFFImtSVWLQrFyYVFGFLALVLLILVI 518
                      4455555555555555555552235554445555555544444443 PP

  == domain 5  score: -1.4 bits;  conditional E-value: 0.25
  Phage_holin_3_6  58 l.alala.a..lwlaalivaavllvlagvlal 85 
                      l ++++  +  +    ++ a ++++++g  ++
       KOO23863.1 566 LdIIGFVpTliYFTYMFVFAMLFFLITGTIGF 597
                      44333311122222222223333333333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (614 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1028  (0.0573373); expected 358.6 (0.02)
Passed bias filter:                      386  (0.0215294); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.67u 0.28s 00:00:00.95 Elapsed: 00:00:00.46
# Mc/sec: 4006.90
//
Query:       KOO23864.1  [L=351]
Description: thaumatin domain family protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.5e-21   77.0   1.3    3.4e-21   75.9   1.3    1.6  1  Thaumatin  Thaumatin family


Domain annotation for each model (and alignments):
>> Thaumatin  Thaumatin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   75.9   1.3   1.9e-25   3.4e-21       5     212 ..      90     347 ..      85     350 .. 0.81

  Alignments for each domain:
  == domain 1  score: 75.9 bits;  conditional E-value: 1.9e-25
                 S-EEEE.EETTT......EEEEE-TT-EEEEE--..-..SEEEEEEECEEE-TTSEECCS--T.TBSS-SS-.--SS--EE................EE CS
   Thaumatin   5 ftvwpailtnagsealektgfelepgesrtlsvpa.kw.sgriwgRtgCsfdssgsCatGdcg.gkleCkgaggappatla................ef 84 
                 + +w a +  ++  ++  ++++l++g+++++ +p+ +  s r+w++ gC+++++ +C+ G+ g    +C  ag app+                   + 
  KOO23864.1  90 DDLWLAHFAFQT--PYFPQDLKLKSGATHEFAIPDvGLaSTRFWPKWGCDVTGA-NCKIGQSGgPGESCPAAGCAPPVDSKfeatfgcmpgtaecahN- 184
                 457888666544..444689**************863359*********99844.6999999966889999999999988778888888888855441. PP

                 EECECCC......EEEEEEE-TT-BSS-EEEE.....E-S----EE-S-CCCC--GGGE.................ETTEE--HHHHH........... CS
   Thaumatin  85 tleekkekk....qdfYdvslvdGynlpvsit.....paeckvaecaadlnkaCpaelkv.........krkdsegkvvaCksaCeaf........... 154
                     ++ ++    +d++d+s vdG+ lp +++     p+  k+ +c++   ++Cp    +         + + ++g++++C s+C++            
  KOO23864.1 185 ---PSAPAErlgsTDWWDISHVDGWTLPYKVEvvgdcPMAPKTIDCSRLALSSCPGAEDLgianmtlrlRDPVGSGETIGCYSPCAKLtyshwgqglgf 280
                 ...22222234459*****************965433322555679999999***99887789999999777889***********9999999999999 PP

                 .....--HHHH-SCGGG...G--.....--HHHHHHHHH-TTSBSSTT-HCCC-EEE.ETT--EEEEE CS
   Thaumatin 155 .....nsdeyCCtgeyatpetCk.....pteysklfkkaCpdaysYayddasstftcskkkadytvtf 212
                      +  + CC     +p++C+     +t++ ++++  Cp  y+Yaydd +   +c  ++++y+vtf
  KOO23864.1 281 tpdskEARDFCCPTPPISPAQCSsgpiiRTQFVAAVHLLCPGVYAYAYDDGTGLAQC-PAGTRYDVTF 347
                 9865434449*************9999999***************************.679******9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (351 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       289  (0.0161191); expected 358.6 (0.02)
Passed bias filter:                      209  (0.0116571); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.26s 00:00:00.68 Elapsed: 00:00:00.41
# Mc/sec: 2595.81
//
Query:       KOO23865.1  [L=728]
Description: hypothetical protein Ctob_003470 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (728 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1637  (0.0913046); expected 358.6 (0.02)
Passed bias filter:                      394  (0.0219756); expected 358.6 (0.02)
Passed Vit filter:                        56  (0.00312343); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.73u 0.26s 00:00:00.99 Elapsed: 00:00:00.42
# Mc/sec: 5157.43
//
Query:       KOO23866.1  [L=104]
Description: tpr repeat-containing protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.9e-17   62.5   0.4    6.8e-09   35.3   0.1    2.1  2  TPR_10    Tetratricopeptide repeat
    7.2e-17   61.5   4.6      4e-10   39.9   1.1    2.1  2  TPR_12    Tetratricopeptide repeat
    2.6e-07   30.2   1.2      0.002   18.1   0.5    2.3  2  TPR_2     Tetratricopeptide repeat
    2.6e-06   27.0   0.4      0.082   12.8   0.2    2.3  2  TPR_1     Tetratricopeptide repeat
      1e-05   26.1   1.4      2e-05   25.1   1.4    1.6  1  TPR_16    Tetratricopeptide repeat
    0.00016   21.2   0.4     0.0088   15.5   0.2    1.9  2  TPR_MalT  MalT-like TPR region
    0.00019   21.2   0.1       0.51   10.5   0.0    2.3  2  TPR_7     Tetratricopeptide repeat
    0.00028   20.9   1.9       0.25   11.6   0.1    2.5  3  TPR_8     Tetratricopeptide repeat
    0.00033   21.2   0.6       0.22   12.4   0.1    2.3  2  TPR_14    Tetratricopeptide repeat
     0.0006   20.3   0.4     0.0012   19.3   0.4    1.5  1  TPR_19    Tetratricopeptide repeat
     0.0037   17.2   0.1       0.46   10.5   0.0    2.5  2  TPR_3     Tetratricopeptide repeat
     0.0039   17.5   0.7       0.53   10.8   0.1    2.5  2  TPR_17    Tetratricopeptide repeat
  ------ inclusion threshold ------
       0.09   13.5   1.7        6.4    7.7   0.1    3.1  3  TPR_4     Tetratricopeptide repeat
       0.11   12.2   0.1        2.3    8.0   0.0    2.2  2  TPR_11    TPR repeat


Domain annotation for each model (and alignments):
>> TPR_10  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.8   0.0   5.4e-09   6.9e-06       5      40 ..       1      36 [.       1      38 [. 0.96
   2 !   35.3   0.1   5.3e-12   6.8e-09       7      41 ..      45      79 ..      40      80 .. 0.97

  Alignments for each domain:
  == domain 1  score: 25.8 bits;  conditional E-value: 5.4e-09
      TPR_10  5 lnNLanalrqrgrydeAealleealairrrllGpdH 40
                +n+La + +++gr+++A+ l+  ++a+ r+llG  H
  KOO23866.1  1 MNDLASLFYEMGRLEKALPLYVTVVAANRELLGVRH 36
                8********************************999 PP

  == domain 2  score: 35.3 bits;  conditional E-value: 5.3e-12
      TPR_10  7 NLanalrqrgrydeAealleealairrrllGpdHP 41
                NLa +l ++g++ +Ae l+ ea ++ +++lGpdHP
  KOO23866.1 45 NLAQLLMDQGELLKAEHLFAEACQTAEEVLGPDHP 79
                9*********************************9 PP

>> TPR_12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.9   1.1   3.1e-13     4e-10       7      72 ..       2      67 ..       1      68 [. 0.96
   2 !   28.9   0.1   8.2e-10     1e-06       5      46 ..      42      83 ..      40      86 .. 0.92

  Alignments for each domain:
  == domain 1  score: 39.9 bits;  conditional E-value: 3.1e-13
      TPR_12  7 nnlaavlrrlgrydeAlellekaleiarrllGpdhpltattlrnLgrlyralgryeeAlelleeal 72
                n la++ +++gr+++Al l+ +++++ r+llG  h +++++l+nL++l+  +g++ +A+ l+ ea 
  KOO23866.1  2 NDLASLFYEMGRLEKALPLYVTVVAANRELLGVRHGDYLAVLFNLAQLLMDQGELLKAEHLFAEAC 67
                469*************************************************************97 PP

  == domain 2  score: 28.9 bits;  conditional E-value: 8.2e-10
      TPR_12  5 alnnlaavlrrlgrydeAlellekaleiarrllGpdhpltat 46
                +l nla++l+ +g++ +A+ l+ +a + a+++lGpdhp t+ 
  KOO23866.1 42 VLFNLAQLLMDQGELLKAEHLFAEACQTAEEVLGPDHPSTLM 83
                455***********************************9975 PP

>> TPR_2  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.8   0.0   0.00034      0.43       5      31 ..       2      28 ..       1      31 [. 0.86
   2 !   18.1   0.5   1.5e-06     0.002       3      29 ..      42      68 ..      40      72 .. 0.92

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00034
       TPR_2  5 ynlGlayyklgdyeeAleafekAleld 31
                + l+ + y++g++e+Al ++  +++ +
  KOO23866.1  2 NDLASLFYEMGRLEKALPLYVTVVAAN 28
                579999*************98887766 PP

  == domain 2  score: 18.1 bits;  conditional E-value: 1.5e-06
       TPR_2  3 alynlGlayyklgdyeeAleafekAle 29
                +l+nl+++++ +g++ +A+++f +A +
  KOO23866.1 42 VLFNLAQLLMDQGELLKAEHLFAEACQ 68
                79***********************87 PP

>> TPR_1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.3   0.0     9e-05      0.12       5      27 ..       2      24 ..       1      30 [. 0.84
   2 !   12.8   0.2   6.4e-05     0.082       3      29 ..      42      68 ..      41      72 .. 0.90

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 9e-05
                HHHHHHHHHTT-HHHHHHHHHHH CS
       TPR_1  5 ynlGnayfklgkydeAleyyekA 27
                + l+ +++++g++++Al  y  +
  KOO23866.1  2 NDLASLFYEMGRLEKALPLYVTV 24
                56999************999766 PP

  == domain 2  score: 12.8 bits;  conditional E-value: 6.4e-05
                HHHHHHHHHHHTT-HHHHHHHHHHHHH CS
       TPR_1  3 alynlGnayfklgkydeAleyyekALe 29
                +l+nl+++++ +g++ +A+  + +A +
  KOO23866.1 42 VLFNLAQLLMDQGELLKAEHLFAEACQ 68
                699*****************9999865 PP

>> TPR_16  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.1   1.4   1.6e-08     2e-05       2      63 ..       3      69 ..       2      79 .. 0.89

  Alignments for each domain:
  == domain 1  score: 25.1 bits;  conditional E-value: 1.6e-08
      TPR_16  2 alaraalragdyddAaaaleaalkrdpssPd........aaeAllllgdaalrqgrlaeAaalyraalra 63
                +la ++++ g+ ++A++++ +++++++   +          + l++l++++  qg+l +A+ l+++a + 
  KOO23866.1  3 DLASLFYEMGRLEKALPLYVTVVAANR---EllgvrhgdYLAVLFNLAQLLMDQGELLKAEHLFAEACQT 69
                6999**********************5...445599999**********************999998744 PP

>> TPR_MalT  MalT-like TPR region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.6   0.0     0.014        18     128     142 ..       4      18 ..       1      35 [. 0.87
   2 !   15.5   0.2   6.8e-06    0.0088      81     125 ..      41      85 ..      23     103 .. 0.83

  Alignments for each domain:
  == domain 1  score: 4.6 bits;  conditional E-value: 0.014
    TPR_MalT 128 ladllyEwndLeeAe 142
                 la l+yE+++Le+A 
  KOO23866.1   4 LASLFYEMGRLEKAL 18 
                 799**********96 PP

  == domain 2  score: 15.5 bits;  conditional E-value: 6.8e-06
    TPR_MalT  81 lallqqaeilvaqGrLheAletyeqalqlateqglqqlplvgfll 125
                   l  +a++l+ qG+L +A++++ +a q a+e  ++  p   ++ 
  KOO23866.1  41 AVLFNLAQLLMDQGELLKAEHLFAEACQTAEEVLGPDHPSTLMYK 85 
                 44567899************************9999988777765 PP

>> TPR_7  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.5   0.0    0.0004      0.51       4      25 ..       3      24 ..       1      35 [. 0.81
   2 !    9.0   0.0    0.0012       1.5       2      25 ..      43      66 ..      42      77 .. 0.82

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.0004
       TPR_7  4 nLarlysrlGdyeeAielyeqs 25
                 La+l+ ++G+ e+A+ ly  +
  KOO23866.1  3 DLASLFYEMGRLEKALPLYVTV 24
                69*****************774 PP

  == domain 2  score: 9.0 bits;  conditional E-value: 0.0012
       TPR_7  2 LlnLarlysrlGdyeeAielyeqs 25
                L+nLa+l  ++G+  +A+ l+ ++
  KOO23866.1 43 LFNLAQLLMDQGELLKAEHLFAEA 66
                99***********99999998874 PP

>> TPR_8  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.5   0.0    0.0021       2.6       5      31 ..       2      28 ..       1      30 [. 0.83
   2 !   11.6   0.1    0.0002      0.25       3      29 ..      42      68 ..      40      72 .. 0.89
   3 ?   -2.9   0.1         9   1.1e+04      21      31 ..      85      95 ..      85      97 .. 0.71

  Alignments for each domain:
  == domain 1  score: 8.5 bits;  conditional E-value: 0.0021
                HHHHHHHHHTT-HHHHHHHHHHHHHHH CS
       TPR_8  5 ynlgsiylklgdyeeAkeyyekaleld 31
                + l+s+  ++g++e+A   y  ++ ++
  KOO23866.1  2 NDLASLFYEMGRLEKALPLYVTVVAAN 28
                679*************99887776655 PP

  == domain 2  score: 11.6 bits;  conditional E-value: 0.0002
                HHHHHHHHHHHTT-HHHHHHHHHHHHH CS
       TPR_8  3 ayynlgsiylklgdyeeAkeyyekale 29
                +++nl+++++++g++ +A+  + +a++
  KOO23866.1 42 VLFNLAQLLMDQGELLKAEHLFAEACQ 68
                79*****************99999976 PP

  == domain 3  score: -2.9 bits;  conditional E-value: 9
                HHHHHHHHHHH CS
       TPR_8 21 keyyekaleld 31
                k++++++ +l+
  KOO23866.1 85 KASFKEVKKLQ 95
                67888887775 PP

>> TPR_14  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.6   0.1    0.0014       1.8       6      44 .]       3      49 ..       2      49 .. 0.84
   2 !   12.4   0.1   0.00017      0.22       6      42 ..      45      86 ..      40      88 .. 0.77

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 0.0014
      TPR_14  6 alaeallalGdpdeAiallrrala........laPddaeawlllaql 44
                +la+++++ G++++A+ l+  ++a        ++ d +++++ laql
  KOO23866.1  3 DLASLFYEMGRLEKALPLYVTVVAanrellgvRHGDYLAVLFNLAQL 49
                69******************999977777777777888888888876 PP

  == domain 2  score: 12.4 bits;  conditional E-value: 0.00017
      TPR_14  6 alaeallalGdpdeAiallrrala.....laPddaeawllla 42
                 la++l+ +G++ +A+ l+ +a++     l+Pd++ ++++ a
  KOO23866.1 45 NLAQLLMDQGELLKAEHLFAEACQtaeevLGPDHPSTLMYKA 86
                589999999999999999999999555555688888777766 PP

>> TPR_19  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.3   0.4   9.2e-07    0.0012       2      49 ..       9      64 ..       8      67 .. 0.86

  Alignments for each domain:
  == domain 1  score: 19.3 bits;  conditional E-value: 9.2e-07
      TPR_19  2 laegdyaeAlalleqalqe........dpknaearllLAeallalgqldeAealLd 49
                +++g+++ Al+l+  + ++          ++++++ +LA++l+ +g+l +Ae l +
  KOO23866.1  9 YEMGRLEKALPLYVTVVAAnrellgvrHGDYLAVLFNLAQLLMDQGELLKAEHLFA 64
                79*************999955566666666*********************98876 PP

>> TPR_3  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.5   0.0   0.00036      0.46       7      26 ..       4      21 ..       3      22 .. 0.91
   2 ?    4.1   0.1     0.036        47       5      27 ..      44      64 ..      40      68 .. 0.77

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00036
                HHHHHHHTT-HHHHHHH..H CS
       TPR_3  7 yAaefynkkkyqeArelfsY 26
                +A  fy ++++++A+ l  Y
  KOO23866.1  4 LASLFYEMGRLEKALPL--Y 21
                89************998..4 PP

  == domain 2  score: 4.1 bits;  conditional E-value: 0.036
                HHHHHHHHHTT-HHHHHHH..HH CS
       TPR_3  5 ysyAaefynkkkyqeArelfsYa 27
                + +A  + +++++ +A++l  +a
  KOO23866.1 44 FNLAQLLMDQGELLKAEHL--FA 64
                55666677899999*****..65 PP

>> TPR_17  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.7   0.1     0.035        45      16      32 ..       1      17 [.       1      18 [. 0.91
   2 !   10.8   0.1   0.00041      0.53      14      33 ..      41      60 ..      35      61 .. 0.87

  Alignments for each domain:
  == domain 1  score: 4.7 bits;  conditional E-value: 0.035
      TPR_17 16 ynnLAelllknGdlmtA 32
                +n LA l+++ G+l++A
  KOO23866.1  1 MNDLASLFYEMGRLEKA 17
                699***********999 PP

  == domain 2  score: 10.8 bits;  conditional E-value: 0.00041
      TPR_17 14 daynnLAelllknGdlmtAr 33
                 +++nLA+ll  +G+l +A+
  KOO23866.1 41 AVLFNLAQLLMDQGELLKAE 60
                589************99886 PP

>> TPR_4  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.1   0.0      0.33   4.2e+02       7      23 ..       4      20 ..       2      21 .. 0.80
   2 ?    7.7   0.1     0.005       6.4       2      17 ..      41      56 ..      40      60 .. 0.88
   3 ?    1.2   0.2      0.65   8.4e+02      17      26 .]      63      72 ..      62      72 .. 0.89

  Alignments for each domain:
  == domain 1  score: 2.1 bits;  conditional E-value: 0.33
       TPR_4  7 LArallalGdldeAral 23
                LA + ++ G+l+ A+ l
  KOO23866.1  4 LASLFYEMGRLEKALPL 20
                66677788******976 PP

  == domain 2  score: 7.7 bits;  conditional E-value: 0.005
       TPR_4  2 rallaLArallalGdl 17
                ++l +LA++l ++G+l
  KOO23866.1 41 AVLFNLAQLLMDQGEL 56
                6799**********96 PP

  == domain 3  score: 1.2 bits;  conditional E-value: 0.65
       TPR_4 17 ldeAraller 26
                ++eA++++e+
  KOO23866.1 63 FAEACQTAEE 72
                69*****996 PP

>> TPR_11  TPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.0   0.0    0.0018       2.3       3      21 ..       7      25 ..       5      30 .. 0.83
   2 ?    1.9   0.1      0.14   1.8e+02      29      42 .]      41      54 ..      38      54 .. 0.84

  Alignments for each domain:
  == domain 1  score: 8.0 bits;  conditional E-value: 0.0018
      TPR_11  3 ayyeqGkyeeAieaYkkAl 21
                ++ye G++e+A+  Y + +
  KOO23866.1  7 LFYEMGRLEKALPLYVTVV 25
                79**********8887665 PP

  == domain 2  score: 1.9 bits;  conditional E-value: 0.14
      TPR_11 29 eayynLGlayykqG 42
                 +++nL+++++ qG
  KOO23866.1 41 AVLFNLAQLLMDQG 54
                6789*******998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (104 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       456  (0.0254337); expected 358.6 (0.02)
Passed bias filter:                      379  (0.0211389); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                        14  (0.000780858); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              14  [number of targets reported over threshold]
# CPU time: 0.39u 0.23s 00:00:00.62 Elapsed: 00:00:00.39
# Mc/sec: 805.44
//
Query:       KOO23867.1  [L=334]
Description: alteRNAtive oxidase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.4e-67  227.4   0.1    1.7e-67  227.1   0.1    1.1  1  AOX       Alternative oxidase


Domain annotation for each model (and alignments):
>> AOX  Alternative oxidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  227.1   0.1   9.6e-72   1.7e-67       9     215 .]      88     298 ..      77     298 .. 0.94

  Alignments for each domain:
  == domain 1  score: 227.1 bits;  conditional E-value: 9.6e-72
         AOX   9 vklahrepktlsDkvaiglvk.llRwlaDlvtrekkleltekkylhRaifLetvAgvpgmvaavlrhLrslrlmkrdkgwirtlleeaenermHllvll 106
                  +  h++p tl Dk+a+g++   l   ++++t+++k   +++ +  R+i+Le+ Agvpg+vaa +rh+rslr ++rd+gwi+tlleeaenermHllv+l
  KOO23867.1  88 TSHDHHTPITLPDKLAYGVMYyGLYHPFNFITGYTKIDPSPRAIEWRLIVLESFAGVPGFVAAGFRHFRSLRSLQRDHGWIHTLLEEAENERMHLLVCL 186
                 5678*************976516999************************************************************************* PP

         AOX 107 klaeptlleRllvllaqgvffniflllYllsPrvahrlvgyleEeavvtYtqliedide.Gk..leewekvkaPeiAlqYwklqeeatlrdvilliRaD 202
                 ++ + + ++Rl+v++aq  ++ +++l+Y+++P++ hr+vgyle  a++tY ++i++i++ G+   e+w++ +aPe+A+ Ywkl+++a+++d +++i aD
  KOO23867.1 187 TMFQAGPITRLMVVGAQFAMTPFLFLTYIIYPKAVHRFVGYLEQTACTTYKNIIDHIETpGTrlHEAWANLPAPEMAKGYWKLSDDAKWVDTLKCIYAD 285
                 **********************************************************997666679******************************** PP

         AOX 203 Eakhrdvnhtlan 215
                 E++hrdvnht+a+
  KOO23867.1 286 ETHHRDVNHTFAD 298
                 ***********96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (334 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       510  (0.0284455); expected 358.6 (0.02)
Passed bias filter:                      444  (0.0247643); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.19s 00:00:00.65 Elapsed: 00:00:00.43
# Mc/sec: 2314.70
//
Query:       KOO23868.1  [L=101]
Description: hypothetical protein Ctob_007255 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.8e-09   37.9   0.0      2e-09   37.7   0.0    1.1  1  Methyltransf_21  Methyltransferase FkbM domain


Domain annotation for each model (and alignments):
>> Methyltransf_21  Methyltransferase FkbM domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.7   0.0   1.1e-13     2e-09      99     150 ..      12      61 ..       6      83 .. 0.82

  Alignments for each domain:
  == domain 1  score: 37.7 bits;  conditional E-value: 1.1e-13
  Methyltransf_21  99 vvtldsfleeikksridllkiDvEGaElevLeGaqkglkrcqpnlivvEvhk 150
                      v+  +++++++++++idll +DvEGaEl+vL   + +++ ++++ ivvE+  
       KOO23868.1  12 VTPFSTLFQRHRIQTIDLLSVDVEGAELSVL--NSIDFRAVKIRFIVVEKAT 61 
                      7788899************************..5677777777888899643 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (101 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       305  (0.0170115); expected 358.6 (0.02)
Passed bias filter:                      282  (0.0157287); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.24s 00:00:00.60 Elapsed: 00:00:00.39
# Mc/sec: 771.25
//
Query:       KOO23869.1  [L=333]
Description: hypothetical protein Ctob_007252 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.082   13.3   1.0       0.13   12.6   0.1    1.7  2  UPF0223   Uncharacterised protein family (UPF0223)


Domain annotation for each model (and alignments):
>> UPF0223  Uncharacterised protein family (UPF0223)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.1      0.36   6.5e+03      32      74 ..      59      72 ..      44      83 .. 0.50
   2 ?   12.6   0.1   7.5e-06      0.13      43      83 ..     108     148 ..     101     151 .. 0.90

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 0.36
                -EEHHHHHHHHHHHHHH---HHHHHHHHHHHHCCSS--HHHHH CS
     UPF0223 32 gvereellkaYrrFkevvpskseekqldreFekasgyslYrvv 74
                +  ++e+ +                              Y + 
  KOO23869.1 59 KNAEAEIAA-----------------------------AYAAA 72
                333333333.............................34444 PP

  == domain 2  score: 12.6 bits;  conditional E-value: 7.5e-06
                 HHHHHH---HHHHHHHHHHHHCCSS--HHHHHHHHHH---S CS
     UPF0223  43 rrFkevvpskseekqldreFekasgyslYrvvkkakesekk 83 
                 ++++ ++p+k+ ++ + r+ e + ++ lY v+++a +++++
  KOO23869.1 108 KEYEAIIPNKAPDQSIVRRLEPQEEVALYAVMQQAVTEAEE 148
                 789*******************************9887765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (333 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2102  (0.11724); expected 358.6 (0.02)
Passed bias filter:                      659  (0.0367561); expected 358.6 (0.02)
Passed Vit filter:                        58  (0.00323498); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.55u 0.27s 00:00:00.82 Elapsed: 00:00:00.40
# Mc/sec: 2498.87
//
Query:       KOO23870.1  [L=441]
Description: serine threonine-protein kinase 11 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.2e-58  198.5   0.0    1.5e-58  198.2   0.0    1.1  1  Pkinase      Protein kinase domain
    5.4e-32  111.1   0.0    6.7e-32  110.8   0.0    1.1  1  Pkinase_Tyr  Protein tyrosine kinase
    4.1e-11   42.7   0.0    2.3e-08   33.7   0.0    2.1  2  Kinase-like  Kinase-like
  ------ inclusion threshold ------
       0.15   11.4   0.7       0.22   10.8   0.7    1.2  1  AAA_8        P-loop containing dynein motor region D4


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  198.2   0.0   3.4e-62   1.5e-58       2     264 .]      30     292 ..      29     292 .. 0.92

  Alignments for each domain:
  == domain 1  score: 198.2 bits;  conditional E-value: 3.4e-62
                 EEEEEEEEESSEEEEEEEETTTTEEEEEEEEECHCHCHHHH..HHHHHHHHHHHHHSCTTB--EEEEEEE..SSEEEEEEE--TTEBHHHHHH..HHSS CS
     Pkinase   2 ekleklGeGsfGkVykaveketgkivAvKkikkekakkkke..kkvlrEikilkklkhpnivrlyevfee..kdelylvleyveggeladlle..rkgs 94 
                    e lGeG+ GkV +a+++et + vA+K+i+ ++ +k ++  +++++Ei+i+ klkh+++++++++f +  k+++y+v e+v gg+l+d+     + +
  KOO23870.1  30 MMGEILGEGAQGKVREAIDSETLQRVAIKRINLRQLRKIRHaeENLRKEITIHSKLKHKHVIEMLDSFVNdeKQKVYIVYEHVAGGSLQDVADslPDNV 128
                 56799********************************999999************************9887799******************9998899 PP

                 --HHHHHHHHHHHHHHHHHHHHTTEE-SS-SGGGEEEETTTEEEE-SGTTSEESSSSCS...BCTTTSCGGGS-HHHH.TTSCB.SHHHHHHHHHHHHH CS
     Pkinase  95 lseeeakkiakqilegleylHskgiiHrDlKpeNiLidekgelKitDFGlakelesssk...ltsfvgtseYlAPEvl.keney.skkvDvWslGvily 188
                 l+ + +++ ++q++ +l+y+Hs g++HrD+Kp+N+Li+ +g+lK++DFG+a+el++  +    ++  g++ + +PEv  +++++ + kvDvW++Gv l+
  KOO23870.1 129 LPATLMRRCTYQLFDALAYCHSCGVVHRDIKPSNLLISIEGVLKVGDFGVAEELDRYDEhdtCSKSRGSPAFQSPEVAaGKESFsGFKVDVWAAGVSLF 227
                 ******************************************************99888888999*************7555556************** PP

                 HHHHSS-STTTSSHHHHHHHHHHTHHHHHHHCTSHH...HHHTTS-HHHHHHHHHHT-SSGCCSTTHHHHHTSGGG CS
     Pkinase 189 elltgkppfsgekgkekvekeldqlekilkilgetkeklpeaseiseeakdllkkllkkdpkkRltaeellqhpyl 264
                  l++g+ pf+   g++        l ++ ++++  k ++pe+   + +++dl+  ll +d+++Rl+++++ +h +l
  KOO23870.1 228 LLMSGQVPFE---GSS--------LLHLWELIELGKYDIPERIAADAKLRDLICGLLVVDETTRLSVQDARKHTWL 292
                 **********...443........222333445568999************************************7 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  110.8   0.0   1.5e-35   6.7e-32       3     252 ..      31     283 ..      29     289 .. 0.87

  Alignments for each domain:
  == domain 1  score: 110.8 bits;  conditional E-value: 1.5e-35
                  EEEEEEEESSEEEEEEEEETTTTSSEEEEEEEEEST...TSSHHHHHHHHHHHHHHHTS-BTTB--EEEEEE..SSSSEEEEEE--TTEBHHHHHHHT CS
  Pkinase_Tyr   3 lgkklGeGafGkVvegtlkgekekkevkVavKtlke...eateeekeelleeakimkklkhpnivkllgvct..keepllivteyvkgGdLlkfLrkk 95 
                  +g+ lGeGa GkV e+  +    ++ ++Va+K ++    ++ ++ +e+l +e++i +klkh++++++l   +  ++++++iv e v+gG+L++   + 
   KOO23870.1  31 MGEILGEGAQGKVREAIDS----ETLQRVAIKRINLrqlRKIRHAEENLRKEITIHSKLKHKHVIEMLDSFVndEKQKVYIVYEHVAGGSLQDVADSL 124
                  6789************988....88999****9963111333445899********************9999777778*******************9 PP

                  CTTTSBHHHHHHHHHHHHHHHHHHHHTTEEEST-SGGGEEEEETTEEEE-STTTHEETTTSSEEEETTSSTSGGGGS-HHHHHHSE..EEHHHHHHHH CS
  Pkinase_Tyr  96 ekekltlkdllsfalqvAkGmeyLeskklvHrdlaarNvLlsenkvvkisDfGLardiekddeyvkkeeaklpvkWmapEslkekk..ftsksDvWsf 191
                   ++ l  + + ++++q+ ++++y +s  +vHrd+   N L+s + v k++DfG+a+++ + de  + ++++ +  + +pE+   k+     k DvW+ 
   KOO23870.1 125 PDNVLPATLMRRCTYQLFDALAYCHSCGVVHRDIKPSNLLISIEGVLKVGDFGVAEELDRYDEHDTCSKSRGSPAFQSPEVAAGKEsfSGFKVDVWAA 222
                  999999999999**********************************************9999999999999999*******9988764557******* PP

                  HHHHHHHHTTSSGTTTTSHHHHHHHHH.HTTEES-BBTTSBHHHHHHHHHHT-SSGGGS--H CS
  Pkinase_Tyr 192 GvllwEiftlgespypglkneevlekl.kegkrlekpekcpeelyelmkkcweedpeeRptf 252
                  Gv l+ +++ g+ p++g +  ++ e +   ++ +++   + ++l +l+   +  d + R + 
   KOO23870.1 223 GVSLFLLMS-GQVPFEGSSLLHLWELIeLGKYDIPERIAADAKLRDLICGLLVVDETTRLSV 283
                  *****9999.************9999944556788888888888888877777777777665 PP

>> Kinase-like  Kinase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.8   0.2   0.00081       3.6      11      70 ..      26      86 ..      21      95 .. 0.88
   2 !   33.7   0.0   5.2e-12   2.3e-08     150     257 ..     138     243 ..     129     280 .. 0.79

  Alignments for each domain:
  == domain 1  score: 6.8 bits;  conditional E-value: 0.00081
  Kinase-like 11 ertlvrgellkkgdrsvvfevkdqetgeplavkvfllps.easkkdlerlkeqelairllr 70
                 +++++ ge+l++g +++v e+ d et++ +a+k   l + +  +++ e+l+++     +l+
   KOO23870.1 26 HKQYMMGEILGEGAQGKVREAIDSETLQRVAIKRINLRQlRKIRHAEENLRKEITIHSKLK 86
                 678999****************************999998999999999999876666665 PP

  == domain 2  score: 33.7 bits;  conditional E-value: 5.2e-12
  Kinase-like 150 TlqlirlaanLqakglvhgkftvdnllldekgglmlggf...taLvragtkvvlseve..kgfaPpEllgsrggytrknktkmthkldaWqlGlviyr 242
                  T ql    a+ ++ g+vh ++++ nll   +g l++g+f   ++L r+ ++   s+     +f+ pE+ + +          + +k+d+W+ G++ + 
   KOO23870.1 138 TYQLFDALAYCHSCGVVHRDIKPSNLLISIEGVLKVGDFgvaEELDRYDEHDTCSKSRgsPAFQSPEVAAGKES-------FSGFKVDVWAAGVSLFL 228
                  778888999*****************************95555899999998886555559*******999555.......677************** PP

  Kinase-like 243 iwclklPltlateea 257
                  + + ++P++    + 
   KOO23870.1 229 LMSGQVPFEGSSLLH 243
                  ********9865444 PP

>> AAA_8  P-loop containing dynein motor region D4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.7   4.8e-05      0.22     194     246 ..      56     108 ..      48     112 .. 0.84

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 4.8e-05
       AAA_8 194 aLleVaekvleeeeeieeelkesivkvlvevhssveelsekfleelkrkiyvt 246
                 a++ +  + l++  ++ee+l+++i+ +++  h++v e+  +f++  k+k+y++
  KOO23870.1  56 AIKRINLRQLRKIRHAEENLRKEITIHSKLKHKHVIEMLDSFVNDEKQKVYIV 108
                 4555556666778999***********************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (441 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       507  (0.0282782); expected 358.6 (0.02)
Passed bias filter:                      407  (0.0227007); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.49u 0.24s 00:00:00.73 Elapsed: 00:00:00.38
# Mc/sec: 3485.18
//
Query:       KOO23871.1  [L=32]
Description: hypothetical protein Ctob_007250 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
     0.0012   18.8   0.0     0.0012   18.8   0.0    1.0  1  Thioredoxin  Thioredoxin


Domain annotation for each model (and alignments):
>> Thioredoxin  Thioredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.8   0.0   6.9e-08    0.0012      73     102 ..       1      29 [.       1      30 [. 0.93

  Alignments for each domain:
  == domain 1  score: 18.8 bits;  conditional E-value: 6.9e-08
                  SSEEEEEETTEEEEEEESS-HHHHHHHHHH CS
  Thioredoxin  73 iPtlklfkngkevkkyegarekeklaaflk 102
                  +Pt++++k+g ++++++ga+e +k+++ ++
   KOO23871.1   1 MPTFQFYKKGAKIHEFSGASE-DKIREAIA 29 
                  8*******************9.99999886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (32 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       205  (0.011434); expected 358.6 (0.02)
Passed bias filter:                      155  (0.00864521); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.33u 0.25s 00:00:00.58 Elapsed: 00:00:00.42
# Mc/sec: 231.18
//
Query:       KOO23872.1  [L=429]
Description: flavin containing polyamine [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    5.9e-32  111.5   0.0    7.6e-32  111.2   0.0    1.1  1  Amino_oxidase  Flavin containing amine oxidoreductase


Domain annotation for each model (and alignments):
>> Amino_oxidase  Flavin containing amine oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  111.2   0.0   4.2e-36   7.6e-32     207     452 .]     122     390 ..      71     390 .. 0.84

  Alignments for each domain:
  == domain 1  score: 111.2 bits;  conditional E-value: 4.2e-36
                    THTHHHHHHHHH........TTTTEEEETSEEEEEEEEETTCEEEEETTSTEEEESEEEE-S-HHHHH..SSEEESCCSHHHHHHHHHSEEEEEEE CS
  Amino_oxidase 207 gGlsqlpealae........elrgldirlntrVkeikregdgvtvtledgevveaDaVvvTvplgvlk..ailfsPplpdekaeairnlgfgsvnk 292
                     G+s++++a+a+         l ++++ l+++V +i+ e+d vtv+ +dg++ +  +V++T+plgvl+   + f+Pp+    +ea+ ++ + + +k
     KOO23872.1 122 LGYSTVIHAVADgaldggakALDKGRLVLGAEVDRIELECDYVTVRSKDGRSWHSLHVISTLPLGVLQrrPEIFTPPMLTGQREALGRISMSNYTK 217
                    59***********999999999999********************************************9999***9966**************** PP

                    EEEEESSGGSGCSTSE.CECECCCEEETTTEEEEECCECCCSTTTEEEEEEEEECHHHHHHHTTS-HHHHHHHHHHHHHHHHT.GTSSTCSEEEEE CS
  Amino_oxidase 293 vilefdrkfwednalg.qgvlvseltttlgeafissdfpsrappgkglvllvyvggdaaneleslsdeelvqavlrdLrklfg.eevpepkatlvt 386
                    ++ ++d+ +w  +  +    + +++ ++   + + +    +  p++   ll  +g+  a e+e+l+d++ +++++ +L+++++ +++p p+a++ t
     KOO23872.1 218 IHAQWDEVWWNASVYKwV--QANDGFNGGTLPSVRNLAHASVLPSSRT-LLFDLGDPQASEWEQLDDDAAKAKLVAELQRVHPgKAIPLPSAFHMT 310
                    ************886323..4444444444444554455555565555.8********************************************** PP

                    ECCTETTTSSSEEE.BTTHHHHHHHHHHCH..............HCSTTEEE.SGGGCTTTTTSHHHHHHHHHHHHHHHH CS
  Amino_oxidase 387 rWhtdplargsysyvsvgpghedydplakp..............egdprlffAGehtsreypgtvegAilSGlraAaril 452
                    r + dpl++g+ys +   + ++++++ +                +  pr+ + Ge+ + +y+g v+g + SG+r A+r+l
     KOO23872.1 311 RHSIDPLSYGAYSDWGDSTAEDHLRAGMPLsaptppasgqfpprACPPRVWLSGEALCPRYNGFVHGGLISGRRDATRVL 390
                    ************999988866666655554545555555554444447******************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (429 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       194  (0.0108205); expected 358.6 (0.02)
Passed bias filter:                      169  (0.00942607); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.23s 00:00:00.71 Elapsed: 00:00:00.41
# Mc/sec: 3154.71
//
Query:       KOO23873.1  [L=150]
Description: gamma-interferon-inducible lysosomal thiol reductase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.2e-13   50.4   1.1    3.9e-13   49.6   1.1    1.4  1  GILT      Gamma interferon inducible lysosomal thiol reductas


Domain annotation for each model (and alignments):
>> GILT  Gamma interferon inducible lysosomal thiol reductase (GILT)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.6   1.1   2.2e-17   3.9e-13      37     104 ..       1      65 [.       1      67 [. 0.87

  Alignments for each domain:
  == domain 1  score: 49.6 bits;  conditional E-value: 2.2e-17
        GILT  37 lvpfGkakeeskeeeleftCqhGeeECegNklqaCalellkdeekalkliaCmesskek.eeaaekCae 104
                 +vp+G+++++      + tCqhGe+EC ++ +++Ca++++++ +k++++++Cme + ++  +  e+C++
  KOO23873.1   1 MVPYGNSRTTGG----KTTCQHGENECIADSIEQCAIDIYPEFTKHYPFLYCMEGHGSNmLKYTEECSK 65 
                 69***9877665....68*************************************44433888999987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (150 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       434  (0.0242066); expected 358.6 (0.02)
Passed bias filter:                      283  (0.0157845); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.24s 00:00:00.62 Elapsed: 00:00:00.41
# Mc/sec: 1106.45
//
Query:       KOO23874.1  [L=777]
Description: hypothetical protein Ctob_007258 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (777 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       929  (0.0518155); expected 358.6 (0.02)
Passed bias filter:                      483  (0.0269396); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.68u 0.26s 00:00:00.94 Elapsed: 00:00:00.44
# Mc/sec: 5321.71
//
Query:       KOO23875.1  [L=220]
Description: hypothetical protein Ctob_007256 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.073   13.0   0.0       0.15   12.0   0.0    1.6  1  RST       RCD1-SRO-TAF4 (RST) plant domain


Domain annotation for each model (and alignments):
>> RST  RCD1-SRO-TAF4 (RST) plant domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   8.6e-06      0.15      35      56 ..      80     101 ..      65     102 .. 0.89

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 8.6e-06
         RST  35 lkkkkIsreefvrklRsivGDk 56 
                  k+ +I++ efv+++ +++GD 
  KOO23875.1  80 KKELQITKPEFVQQMNTTAGDS 101
                 57789****************7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (220 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       613  (0.0341904); expected 358.6 (0.02)
Passed bias filter:                      450  (0.025099); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.26s 00:00:00.66 Elapsed: 00:00:00.39
# Mc/sec: 1698.64
//
Query:       KOO23876.1  [L=171]
Description: hypothetical protein Ctob_007257 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
  ------ inclusion threshold ------
      0.024   14.5   7.8      0.027   14.3   7.8    1.1  1  RR_TM4-6      Ryanodine Receptor TM 4-6
       0.61   10.2  15.1       0.75    9.9  15.1    1.2  1  UPF0242       Uncharacterised protein family (UPF0242) N-term
          1    9.2  16.6        1.4    8.7  16.6    1.1  1  DUF724        Protein of unknown function (DUF724)
        4.3    7.0  12.4        5.4    6.7  12.4    1.1  1  AAA_11        AAA domain
        5.8    7.2  14.4        7.4    6.9  14.4    1.1  1  Vfa1          AAA-ATPase Vps4-associated protein 1


Domain annotation for each model (and alignments):
>> RR_TM4-6  Ryanodine Receptor TM 4-6
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   7.8   7.6e-06     0.027      54     150 ..      58     158 ..      19     170 .. 0.52

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 7.6e-06
                 XXXXXXX...XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXX..............XXXXXXXXXXX CS
    RR_TM4-6  54 keggqykvvakkseagLgDlseteaeesptpelkkklaeeeeaeeekeeeeepeaeaeekadaengekeekeke....keeeekeseeeeeekkkkkka 148
                 ke   + +  +   agL Dl+   ++  ++ e+k k +e+ ea ++kee++++++ ++e+a + ++e  +++++    + e+ek+++e e +k+  k+a
  KOO23876.1  58 KEPARQMLPVRYLRAGLQDLTFRVPRLGQADEAKAKAEEAREAVRKKEEARQQRQREIEEARQAEEEILREQQRkkelRLEAEKRAAEIERNKAEAKAA 156
                 444445566677889999999999999877666666665555555555555544444444443333333323221111222222222222222211222 PP

                 XX CS
    RR_TM4-6 149 ks 150
                 ++
  KOO23876.1 157 EE 158
                 11 PP

>> UPF0242  Uncharacterised protein family (UPF0242) N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9  15.1   0.00021      0.75      74     150 ..      91     166 ..      63     171 .] 0.67

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.00021
     UPF0242  74 eaklteldeglktkeealeelqeeeeeLkeeldakeeelerlkeenqqLqekleaiaedfeelklel...eeqLaekqel 150
                 +ak  e +e ++    + ee++++ ++  ee  + eee+ r ++++++L+ ++e+ a+++e+ k e+   ee++ ++q++
  KOO23876.1  91 KAKAEEAREAVR----KKEEARQQRQREIEEARQAEEEILREQQRKKELRLEAEKRAAEIERNKAEAkaaEEEILREQQQ 166
                 333333333333....334455555555667889999***************9999998888776541115555555544 PP

>> DUF724  Protein of unknown function (DUF724)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.7  16.6   0.00038       1.4      96     180 ..      83     166 ..      74     170 .. 0.78

  Alignments for each domain:
  == domain 1  score: 8.7 bits;  conditional E-value: 0.00038
      DUF724  96 kLlslkdeqtklleerkklekkieeeesekrkleeeidelekkilelerqlallkekkeaadkeiarlkseaekleeeledveqe 180
                 +L +  + ++k++e+r+++ kk e  ++++r++ee  ++ e++il+ +++++ l+ + e+ ++ei r k+ea+++eee+ + +q+
  KOO23876.1  83 RLGQADEAKAKAEEAREAVRKKEEARQQRQREIEEA-RQAEEEILREQQRKKELRLEAEKRAAEIERNKAEAKAAEEEILREQQQ 166
                 555666777888888888888777777777776665.66777777777777789*9**********************9988876 PP

>> AAA_11  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.7  12.4    0.0015       5.4      81     185 ..      72     168 ..      58     171 .] 0.71

  Alignments for each domain:
  == domain 1  score: 6.7 bits;  conditional E-value: 0.0015
      AAA_11  81 segekykpkivRvgneeeriseavksvsleekvekrlekeekaqlakeiskeleklakelrafeeeeekeklkkskekskskleqerrklkkerkelsk 179
                 +  ++ + ++ R+g+++   + ++k+   +e v+k+ e+  ++q ++ei+++++++++ lr+++++   ++l+ ++ek++++ e+++ + k++ +e+ +
  KOO23876.1  72 AGLQDLTFRVPRLGQAD---EAKAKAEEAREAVRKKEEA--RQQRQREIEEARQAEEEILREQQRK---KELRLEAEKRAAEIERNKAEAKAAEEEILR 162
                 55677788899999999...6677777777888888877..4666778888888888888665555...567777777777777777777777777777 PP

      AAA_11 180 eleeae 185
                 e ++ +
  KOO23876.1 163 EQQQPR 168
                 766655 PP

>> Vfa1  AAA-ATPase Vps4-associated protein 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.9  14.4    0.0021       7.4      44     138 ..      74     167 ..      71     171 .] 0.44

  Alignments for each domain:
  == domain 1  score: 6.9 bits;  conditional E-value: 0.0021
        Vfa1  44 LkDkqFatpivdeeeeeaakkkkeleeeiekvkkeyeekqkkkkekekkkkekd..kkdkdkkkekekdkkkekekeeekkkelkkaeee.leekeep 138
                 L+D  F  p   ++ e+  k+k e ++e  + k+e +++++++ e+ ++  e++  ++++ kk+ + + +k+  e  e +k+e+k+aeee l+e+++p
  KOO23876.1  74 LQDLTFRVPRLGQADEA--KAKAEEAREAVRKKEEARQQRQREIEEARQA-EEEilREQQRKKELRLEAEKRAAE-IERNKAEAKAAEEEiLREQQQP 167
                 88999999999884333..4444444444444444444444444333333.333543333333333333333333.3333333333333303334444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (171 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2598  (0.144905); expected 358.6 (0.02)
Passed bias filter:                      726  (0.0404931); expected 358.6 (0.02)
Passed Vit filter:                       165  (0.00920297); expected 17.9 (0.001)
Passed Fwd filter:                        20  (0.00111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.51u 0.30s 00:00:00.81 Elapsed: 00:00:00.41
# Mc/sec: 1239.92
//
Query:       KOO23877.1  [L=303]
Description: methyltransferase family [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    5.8e-11   42.7   0.0    1.4e-10   41.4   0.0    1.6  2  Methyltransf_21  Methyltransferase FkbM domain


Domain annotation for each model (and alignments):
>> Methyltransf_21  Methyltransferase FkbM domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.0      0.18   3.2e+03       1      16 [.      42      55 ..      42      77 .. 0.76
   2 !   41.4   0.0   8.1e-15   1.4e-10      18     172 ..      97     247 ..      83     248 .. 0.77

  Alignments for each domain:
  == domain 1  score: -2.0 bits;  conditional E-value: 0.18
  Methyltransf_21  1 dvGanigvwdsfanlt 16
                     +vGan+g  ++ ++++
       KOO23877.1 42 NVGANKG--FNLLEFA 55
                     5999999..6666554 PP

  == domain 2  score: 41.4 bits;  conditional E-value: 8.1e-15
  Methyltransf_21  18 rlcggggevlaiEPvpnslpkfeklranll....tlavgndvglyelivegksggkyfpfavgdtngfstssvlggedaryievpvvtldsfle 107
                      r++ ++ + +a+E +p+   +++ lr+ ++    ++ ++   ++++ + + +    y+   v   +++++ ++   + + ++ +pv+t+d fl+
       KOO23877.1  97 RQATASLKLHAFELQPA---NAALLRRMMTatglPVMIH--STAVSNFTGTV----YTAATVVAGSESFGLKHK--QSKNDVAQPVTTIDAFLK 179
                      45666777899******...9999999988444444444..35666666666....666666666666666666..9***************** PP

  Methyltransf_21 108 eikksridllkiDvEGaElevLeGaqkglkrcqpnlivvEvhkfkefet....elfdeirqflrecgyr 172
                        +++r++l+ iD+EG +  v+ G  ++l+ +++ ++ +E +  + ++t      ++  ++++r++gy 
       KOO23877.1 180 TTGIERVHLVSIDTEGEDPLVMMGMVQALSAHRVEVVEFEYNRKW-KVTmkdpRPVGPFVEWMRQLGYT 247
                      ************************************877765533.22255775578888889999986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (303 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       592  (0.0330191); expected 358.6 (0.02)
Passed bias filter:                      378  (0.0210832); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.24s 00:00:00.69 Elapsed: 00:00:00.40
# Mc/sec: 2267.27
//
Query:       KOO23878.1  [L=159]
Description: hypothetical protein Ctob_003371 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (159 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       577  (0.0321825); expected 358.6 (0.02)
Passed bias filter:                      292  (0.0162865); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.39u 0.26s 00:00:00.65 Elapsed: 00:00:00.41
# Mc/sec: 1157.23
//
Query:       KOO23879.1  [L=354]
Description: hypothetical protein Ctob_003372 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.2e-28   96.7   8.5    8.5e-06   25.4   0.1    7.6  8  LRR_6     Leucine Rich repeat
    3.8e-06   26.7   0.1         29    5.8   0.0    6.0  6  LRR_1     Leucine Rich Repeat
    7.8e-05   22.4   2.6       0.62    9.9   0.0    5.0  5  LRR_8     Leucine rich repeat
    0.00045   20.5   0.1        3.5    8.2   0.0    4.3  5  LRR_4     Leucine Rich repeats (2 copies)


Domain annotation for each model (and alignments):
>> LRR_6  Leucine Rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.4   0.1   1.9e-09   8.5e-06       2      23 ..       9      30 ..       8      31 .. 0.95
   2 ?    4.2   0.0     0.012        55       5      24 .]      46      65 ..      44      65 .. 0.93
   3 !    8.4   0.0   0.00056       2.5       2      24 .]      71      93 ..      70      93 .. 0.87
   4 !    7.8   0.0   0.00082       3.7       3      24 .]     101     122 ..      99     122 .. 0.83
   5 !   19.0   0.0   2.2e-07   0.00097       2      24 .]     128     150 ..     127     150 .. 0.95
   6 !   17.8   0.1   5.3e-07    0.0024       4      24 .]     158     178 ..     158     178 .. 0.93
   7 ?   -3.2   0.0       2.8   1.2e+04       3      13 ..     190     200 ..     189     201 .. 0.79
   8 !   12.1   0.0   3.6e-05      0.16       3      23 ..     215     235 ..     213     236 .. 0.88

  Alignments for each domain:
  == domain 1  score: 25.4 bits;  conditional E-value: 1.9e-09
       LRR_6  2 nthLteLdLsgNdIgDeGaeaL 23
                n h+++LdLs+N++g eG++a+
  KOO23879.1  9 NAHVRSLDLSDNGLGAEGVSAI 30
                89*******************9 PP

  == domain 2  score: 4.2 bits;  conditional E-value: 0.012
       LRR_6  5 LteLdLsgNdIgDeGaeaLa 24
                L++L+L+ N+ g +Gaea a
  KOO23879.1 46 LRALSLRQNQAGVDGAEAVA 65
                89**************9976 PP

  == domain 3  score: 8.4 bits;  conditional E-value: 0.00056
       LRR_6  2 nthLteLdLsgNdIgDeGaeaLa 24
                ++ L+ Ld + N Ig++G+  La
  KOO23879.1 71 SHPLECLDFAANAIGNKGLGVLA 93
                6779**************97665 PP

  == domain 4  score: 7.8 bits;  conditional E-value: 0.00082
       LRR_6   3 thLteLdLsgNdIgDeGaeaLa 24 
                 ++L+ L +  N++ DeG+e La
  KOO23879.1 101 CKLRMLCIERNELEDEGMEQLA 122
                 5666677889**********98 PP

  == domain 5  score: 19.0 bits;  conditional E-value: 2.2e-07
       LRR_6   2 nthLteLdLsgNdIgDeGaeaLa 24 
                 n +Lt+L+L +N Ig +G++ La
  KOO23879.1 128 NYSLTSLSLEWNAIGPVGGKTLA 150
                 889*****************997 PP

  == domain 6  score: 17.8 bits;  conditional E-value: 5.3e-07
       LRR_6   4 hLteLdLsgNdIgDeGaeaLa 24 
                 +L++L+L +N++gD+G+  La
  KOO23879.1 158 TLRALNLGWNGLGDQGIAVLA 178
                 8***************98876 PP

  == domain 7  score: -3.2 bits;  conditional E-value: 2.8
       LRR_6   3 thLteLdLsgN 13 
                 ++L  L L +N
  KOO23879.1 190 PTLVDLRLHHN 200
                 68889999888 PP

  == domain 8  score: 12.1 bits;  conditional E-value: 3.6e-05
       LRR_6   3 thLteLdLsgNdIgDeGaeaL 23 
                 ++L+ Ld+sgN Ig  Ga  L
  KOO23879.1 215 RTLEMLDVSGNPIGAGGAATL 235
                 79999************9765 PP

>> LRR_1  Leucine Rich Repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.1   0.0     0.022     1e+02       3      13 ..      13      23 ..      11      35 .. 0.81
   2 ?   -0.7   0.0      0.87   3.9e+03       2      11 ..      46      55 ..      45      79 .. 0.82
   3 ?    1.1   0.0      0.21   9.5e+02       1      14 [.     102     115 ..     102     121 .. 0.85
   4 ?    2.0   0.0      0.11     5e+02       1      12 [.     130     141 ..     130     150 .. 0.85
   5 !    5.8   0.0    0.0064        29       2      14 ..     159     171 ..     158     181 .. 0.83
   6 ?    4.5   0.0     0.017        76       2      13 ..     217     228 ..     214     244 .. 0.80

  Alignments for each domain:
  == domain 1  score: 4.1 bits;  conditional E-value: 0.022
       LRR_1  3 rhLdLsnnpll 13
                r+LdLs+n l+
  KOO23879.1 13 RSLDLSDNGLG 23
                99******984 PP

  == domain 2  score: -0.7 bits;  conditional E-value: 0.87
       LRR_1  2 LrhLdLsnnp 11
                Lr L L++n+
  KOO23879.1 46 LRALSLRQNQ 55
                8999999986 PP

  == domain 3  score: 1.1 bits;  conditional E-value: 0.21
       LRR_1   1 nLrhLdLsnnpllg 14 
                 +Lr L +++n l++
  KOO23879.1 102 KLRMLCIERNELED 115
                 7999******9965 PP

  == domain 4  score: 2.0 bits;  conditional E-value: 0.11
       LRR_1   1 nLrhLdLsnnpl 12 
                 +L++L L++n +
  KOO23879.1 130 SLTSLSLEWNAI 141
                 699******965 PP

  == domain 5  score: 5.8 bits;  conditional E-value: 0.0064
       LRR_1   2 LrhLdLsnnpllg 14 
                 Lr L+L++n l++
  KOO23879.1 159 LRALNLGWNGLGD 171
                 9********9954 PP

  == domain 6  score: 4.5 bits;  conditional E-value: 0.017
       LRR_1   2 LrhLdLsnnpll 13 
                 L+ Ld+s+np++
  KOO23879.1 217 LEMLDVSGNPIG 228
                 8889******95 PP

>> LRR_8  Leucine rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.9   0.1      0.01        46      45      61 .]       6      22 ..       3      22 .. 0.73
   2 ?    0.9   0.0      0.09     4e+02      49      60 ..      44      55 ..      42      67 .. 0.70
   3 ?    1.2   0.1      0.07   3.1e+02      50      60 ..     130     140 ..      85     141 .. 0.74
   4 ?    2.2   0.4     0.034   1.5e+02      26      40 ..     130     144 ..     101     169 .. 0.62
   5 !    9.9   0.0   0.00014      0.62       1      35 [.     190     225 ..     190     228 .. 0.89

  Alignments for each domain:
  == domain 1  score: 3.9 bits;  conditional E-value: 0.01
                GTT--S-.EEE--SS-- CS
       LRR_8 45 fsgLpsLrsLdLsgNrL 61
                +++ +++rsLdLs+N L
  KOO23879.1  6 LADNAHVRSLDLSDNGL 22
                56677888888888865 PP

  == domain 2  score: 0.9 bits;  conditional E-value: 0.09
                -S-.EEE--SS- CS
       LRR_8 49 psLrsLdLsgNr 60
                p+Lr L L++N+
  KOO23879.1 44 PALRALSLRQNQ 55
                455555555554 PP

  == domain 3  score: 1.2 bits;  conditional E-value: 0.07
                 S-.EEE--SS- CS
       LRR_8  50 sLrsLdLsgNr 60 
                 sL+sL L++N 
  KOO23879.1 130 SLTSLSLEWNA 140
                 67777777775 PP

  == domain 4  score: 2.2 bits;  conditional E-value: 0.034
                 T--EEE--SS---GG CS
       LRR_8  26 nLkvLdLsnNllttl 40 
                 +L++L+L  N +  +
  KOO23879.1 130 SLTSLSLEWNAIGPV 144
                 455555555554444 PP

  == domain 5  score: 9.9 bits;  conditional E-value: 0.00014
                 TT-SEEE-TTS--SEE-TTSSTT.-TT--EEE--SS CS
       LRR_8   1 pnLtsLdLsnNrltslddeaFkg.lsnLkvLdLsnN 35 
                 p+L  L L++Nr t+l     ++ l+ L++Ld s N
  KOO23879.1 190 PTLVDLRLHHNRATVLAALPLSRaLRTLEMLDVSGN 225
                 678899999999999999999999999999999999 PP

>> LRR_4  Leucine Rich repeats (2 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.8   0.0     0.038   1.7e+02       3      13 ..      12      22 ..       5      30 .. 0.80
   2 ?    0.2   0.0      0.24   1.1e+03       1      12 [.      44      55 ..      44      86 .. 0.75
   3 ?    2.9   0.0     0.037   1.6e+02       2      32 ..     102     137 ..     101     147 .. 0.73
   4 ?   -4.0   0.0         4   1.8e+04       3      10 ..     159     167 ..     159     172 .. 0.58
   5 !    8.2   0.0   0.00077       3.5       3      36 ..     192     227 ..     190     229 .. 0.86

  Alignments for each domain:
  == domain 1  score: 2.8 bits;  conditional E-value: 0.038
                --EEE--SS-- CS
       LRR_4  3 LevLdLsnNql 13
                 ++LdLs+N l
  KOO23879.1 12 VRSLDLSDNGL 22
                57788888877 PP

  == domain 2  score: 0.2 bits;  conditional E-value: 0.24
                SS--EEE--SS- CS
       LRR_4  1 pnLevLdLsnNq 12
                p L+ L+L++Nq
  KOO23879.1 44 PALRALSLRQNQ 55
                568999999887 PP

  == domain 3  score: 2.9 bits;  conditional E-value: 0.037
                 S--EEE--SS---E-S-..HH....H-TT--EEE-.- CS
       LRR_4   2 nLevLdLsnNqltdipl..le....klpnLkeLdLsg 32 
                 +L+ L++  N l d +   l+     + +L++L+L +
  KOO23879.1 102 KLRMLCIERNELEDEGMeqLAtalgENYSLTSLSL-E 137
                 89999999999999888663356625999999999.3 PP

  == domain 4  score: -4.0 bits;  conditional E-value: 4
                 --EEE--.S CS
       LRR_4   3 LevLdLs.n 10 
                 L+ L+L+ n
  KOO23879.1 159 LRALNLGwN 167
                 566777644 PP

  == domain 5  score: 8.2 bits;  conditional E-value: 0.00077
                 --EEE--SS-...--E-S-HHH-TT--EEE-.-S--- CS
       LRR_4   3 LevLdLsnNq...ltdiplleklpnLkeLdLsgNnli 36 
                 L  L L++N+   l  +pl + l  L+ Ld+sgN +i
  KOO23879.1 192 LVDLRLHHNRatvLAALPLSRALRTLEMLDVSGN-PI 227
                 677999**99999999999888************.55 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (354 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       352  (0.019633); expected 358.6 (0.02)
Passed bias filter:                      250  (0.0139439); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.45u 0.23s 00:00:00.68 Elapsed: 00:00:00.40
# Mc/sec: 2687.99
//
Query:       KOO23880.1  [L=3777]
Description: leucine-rich-repeat protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.1e-16   60.3  25.7    6.4e-09   35.4   4.4    9.0 10  LRR_8     Leucine rich repeat
    1.5e-15   57.1  32.7     0.0016   18.8   0.5   10.9 13  LRR_4     Leucine Rich repeats (2 copies)
      5e-13   48.0  48.5     0.0052   16.7   0.0   15.9 18  LRR_6     Leucine Rich repeat
     0.0014   18.9   0.1     0.0042   17.3   0.1    1.8  1  SH3_3     Bacterial SH3 domain
  ------ inclusion threshold ------
      0.059   13.9  19.1        9.8    7.2   0.0   10.2 12  LRR_1     Leucine Rich Repeat


Domain annotation for each model (and alignments):
>> LRR_8  Leucine rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.1   0.3     0.022        79      27      61 .]      60      98 ..      57      98 .. 0.74
   2 !   14.6   0.3   5.7e-06     0.021       2      42 ..      87     131 ..      86     136 .. 0.81
   3 ?    4.2   0.0      0.01        36      19      40 ..    2071    2092 ..    2051    2096 .. 0.75
   4 ?    3.8   0.0     0.014        49      20      54 ..    2105    2143 ..    2100    2149 .. 0.69
   5 ?   -3.6   0.1       2.8     1e+04      49      61 .]    2520    2532 ..    2517    2532 .. 0.77
   6 ?    1.4   0.0     0.074   2.7e+02      20      35 ..    2710    2725 ..    2700    2728 .. 0.69
   7 !   28.2   1.9   3.3e-10   1.2e-06       1      61 []    2877    2935 ..    2877    2935 .. 0.94
   8 !   35.4   4.4   1.8e-12   6.4e-09       2      61 .]    2901    2958 ..    2900    2958 .. 0.98
   9 !   22.4   1.7   2.2e-08   7.8e-05       3      61 .]    2925    2981 ..    2924    2981 .. 0.88
  10 ?    1.7   0.0     0.062   2.2e+02      28      56 ..    3619    3648 ..    3616    3650 .. 0.54

  Alignments for each domain:
  == domain 1  score: 3.1 bits;  conditional E-value: 0.022
                --EEE--SS--.....-GGGGGGGTT--S-.EEE--SS-- CS
       LRR_8 27 LkvLdLsnNll.....ttlspgafsgLpsLrsLdLsgNrL 61
                L +LdLs+N+l     +tl p+ f+ +p L  L+L++N+L
  KOO23880.1 60 LGILDLSRNKLgvgfaETL-PKFFAVCPLLHTLHLQYNQL 98
                6678899998844444456.78888899999999999987 PP

  == domain 2  score: 14.6 bits;  conditional E-value: 5.7e-06
                 T-SEEE-TTS--S....EE-TTSSTT-TT--EEE--SS---GGGG CS
       LRR_8   2 nLtsLdLsnNrlt....slddeaFkglsnLkvLdLsnNllttlsp 42 
                  L++L+L+ N+l     +l   a kg s+Lk+LdLs+N+l  + p
  KOO23880.1  87 LLHTLHLQYNQLGvqggVLVAAALKGASALKYLDLSHNNLCGITP 131
                 58999999999972222577899****************977765 PP

  == domain 3  score: 4.2 bits;  conditional E-value: 0.01
                  TSSTT-TT--EEE--SS---GG CS
       LRR_8   19 eaFkglsnLkvLdLsnNllttl 40  
                  ++ +++++Lk LdLs+N l++l
  KOO23880.1 2071 KMINTCKSLKALDLSDNGLDRL 2092
                  5667789999999999988776 PP

  == domain 4  score: 3.8 bits;  conditional E-value: 0.014
                  SSTT-TT--EEE--SS---G....GGGGGGTT--S-.EE CS
       LRR_8   20 aFkglsnLkvLdLsnNlltt....lspgafsgLpsLrsL 54  
                  +F ++  L+ L+L++N+l      + ++a++++ +L++L
  KOO23880.1 2105 SFATNVTLTDLNLNENKLGQvgvrIAARALRSCVALTKL 2143
                  67778999********99751222456666666666666 PP

  == domain 5  score: -3.6 bits;  conditional E-value: 2.8
                  -S-.EEE--SS-- CS
       LRR_8   49 psLrsLdLsgNrL 61  
                  ++++sL L +N+L
  KOO23880.1 2520 EKITSLLLANNDL 2532
                  6788899999987 PP

  == domain 6  score: 1.4 bits;  conditional E-value: 0.074
                  SSTT-TT--EEE--SS CS
       LRR_8   20 aFkglsnLkvLdLsnN 35  
                  a ++++ Lk Ld+snN
  KOO23880.1 2710 ALQDNKTLKQLDISNN 2725
                  5566677777777777 PP

  == domain 7  score: 28.2 bits;  conditional E-value: 3.3e-10
                  TT-SEEE-TTS--SEE-TTSSTT-TT--EEE--SS---GGGGGGGTT--S-.EEE--SS-- CS
       LRR_8    1 pnLtsLdLsnNrltslddeaFkglsnLkvLdLsnNllttlspgafsgLpsLrsLdLsgNrL 61  
                  +n++sL L++Nrlt+++    + +++L+ ++L +N++  l p ++  L++L+ LdL  N +
  KOO23880.1 2877 RNVRSLALDRNRLTGIPSLIGT-MTSLRKISLHSNQIIEL-PASMFLLTALEALDLHKNSI 2935
                  699*************876666.*****************.9****************986 PP

  == domain 8  score: 35.4 bits;  conditional E-value: 1.8e-12
                  T-SEEE-TTS--SEE-TTSSTT-TT--EEE--SS---GGGGGGGTT--S-.EEE--SS-- CS
       LRR_8    2 nLtsLdLsnNrltslddeaFkglsnLkvLdLsnNllttlspgafsgLpsLrsLdLsgNrL 61  
                  +L++++L++N++ +l+ ++F  l++L+ LdL  N++++l p ++ +L++L +LdLs NrL
  KOO23880.1 2901 SLRKISLHSNQIIELPASMFL-LTALEALDLHKNSIKVL-PATIGNLRALNKLDLSENRL 2958
                  7********************.*****************.9*****************98 PP

  == domain 9  score: 22.4 bits;  conditional E-value: 2.2e-08
                  -SEEE-TTS--SEE-TTSSTT-TT--EEE--SS---GGGGGGGTT--S-.EEE--SS-- CS
       LRR_8    3 LtsLdLsnNrltslddeaFkglsnLkvLdLsnNllttlspgafsgLpsLrsLdLsgNrL 61  
                  L+ LdL++N++++l+ +  + l++L+ LdLs+N+l+ l p ++  L+   +L + +N+L
  KOO23880.1 2925 LEALDLHKNSIKVLPATIGN-LRALNKLDLSENRLQEL-PVTICELNEALQLSVGRNPL 2981
                  88999******999887666.9***************9.89999999988888888876 PP

  == domain 10  score: 1.7 bits;  conditional E-value: 0.062
                  -EEE--SS---GGG.GGGGTT--S-.EEE- CS
       LRR_8   28 kvLdLsnNllttls.pgafsgLpsLrsLdL 56  
                  ++LdLs+ +++ +   +af g +s++sLd+
  KOO23880.1 3619 TSLDLSCTKIDGFPlLQAFKGNTSVTSLDV 3648
                  456666666666321366666666666654 PP

>> LRR_4  Leucine Rich repeats (2 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.4   0.1    0.0035        13       3      36 ..      60      98 ..      58     102 .. 0.73
   2 !   12.5   0.2   4.1e-05      0.15       3      35 ..      88     126 ..      86     132 .. 0.78
   3 !    8.7   0.1   0.00065       2.3       7      42 ..    2055    2095 ..    2050    2097 .. 0.71
   4 !    8.0   1.1    0.0011         4       1      38 [.    2077    2124 ..    2077    2130 .. 0.69
   5 ?    0.3   0.1       0.3   1.1e+03       3      18 ..    2112    2127 ..    2110    2148 .. 0.61
   6 ?    0.2   0.3      0.32   1.2e+03       1      17 [.    2448    2465 ..    2448    2499 .. 0.57
   7 ?   -3.4   0.0       4.3   1.5e+04       3      15 ..    2522    2534 ..    2521    2542 .. 0.83
   8 ?    1.0   0.0      0.18   6.4e+02       3      32 ..    2553    2585 ..    2552    2595 .. 0.81
   9 ?    3.4   0.0      0.03   1.1e+02      21      36 ..    2713    2727 ..    2705    2732 .. 0.73
  10 ?   -2.6   0.0       2.4   8.5e+03      26      36 ..    2796    2805 ..    2794    2811 .. 0.60
  11 !   18.4   0.1   5.9e-07    0.0021       2      39 ..    2878    2915 ..    2877    2918 .. 0.87
  12 !   18.8   0.5   4.6e-07    0.0016       1      39 [.    2923    2961 ..    2923    2966 .. 0.88
  13 !    5.3   0.0    0.0082        29       3      32 ..    3618    3649 ..    3616    3660 .. 0.84

  Alignments for each domain:
  == domain 1  score: 6.4 bits;  conditional E-value: 0.0035
                --EEE--SS---E-S-....HH..H.-TT--EEE-.-S--- CS
       LRR_4  3 LevLdLsnNqltdipl....le..k.lpnLkeLdLsgNnli 36
                L +LdLs N+l  +++    ++    +p L++L+L  N ++
  KOO23880.1 60 LGILDLSRNKLG-VGFaetlPKffAvCPLLHTLHLQYN-QL 98
                778*******99.4454454116644999******667.65 PP

  == domain 2  score: 12.5 bits;  conditional E-value: 4.1e-05
                 --EEE--SS---E-S-......HHH-TT--EEE-.-S-- CS
       LRR_4   3 LevLdLsnNqltdipl......leklpnLkeLdLsgNnl 35 
                 L +L+L+ Nql   ++      l++   Lk+LdLs+Nnl
  KOO23880.1  88 LHTLHLQYNQLGVQGGvlvaaaLKGASALKYLDLSHNNL 126
                 89**********8888955433336788*********75 PP

  == domain 3  score: 8.7 bits;  conditional E-value: 0.00065
                  E--SS---..E-S-HH...H.-TT--EEE-.-S-----GGGG CS
       LRR_4    7 dLsnNqlt..diplle...k.lpnLkeLdLsgNnlitdldeL 42  
                    s+N +t  d+p+l+   + +++Lk LdLs+N  +++l+ +
  KOO23880.1 2055 TVSHNEITmdDVPGLSkmiNtCKSLKALDLSDN-GLDRLTAI 2095
                  567888665255556677755999******888.88888765 PP

  == domain 4  score: 8.0 bits;  conditional E-value: 0.0011
                  SS--EEE--SS---E-S-.HH.......H.-TT..--EEE-.-S----- CS
       LRR_4    1 pnLevLdLsnNqltdipl.le.......k.lpn..LkeLdLsgNnlitd 38  
                  ++L+ LdLs+N l  +   ++       +  +n  L+ L+L++N ++++
  KOO23880.1 2077 KSLKALDLSDNGLDRLTAiPAdwsrvcdSfATNvtLTDLNLNEN-KLGQ 2124
                  68*********955555542233556663344455******888.7766 PP

  == domain 5  score: 0.3 bits;  conditional E-value: 0.3
                  --EEE--SS---E-S- CS
       LRR_4    3 LevLdLsnNqltdipl 18  
                  L+ L+L+ N+l  ++ 
  KOO23880.1 2112 LTDLNLNENKLGQVGV 2127
                  7777888777766555 PP

  == domain 6  score: 0.2 bits;  conditional E-value: 0.32
                  SS--EEE--SS---.E-S CS
       LRR_4    1 pnLevLdLsnNqlt.dip 17  
                  + Le L+Lsn+ l   i+
  KOO23880.1 2448 TMLECLNLSNTGLGnAIG 2465
                  579999999977764444 PP

  == domain 7  score: -3.4 bits;  conditional E-value: 4.3
                  --EEE--SS---E CS
       LRR_4    3 LevLdLsnNqltd 15  
                   ++L L+nN l +
  KOO23880.1 2522 ITSLLLANNDLGK 2534
                  68999***99875 PP

  == domain 8  score: 1.0 bits;  conditional E-value: 0.18
                  --EEE--SS.---E-S-.HH.H.-TT--EEE-.- CS
       LRR_4    3 LevLdLsnN.qltdipl.le.k.lpnLkeLdLsg 32  
                  L++LdL++N  l   +  l+ k + +L+++d+ +
  KOO23880.1 2553 LKFLDLRGNvGLDGYDTaLAiKrNESLTSVDI-R 2585
                  899****9878999988866777999**9999.4 PP

  == domain 9  score: 3.4 bits;  conditional E-value: 0.03
                  H-TT--EEE-.-S--- CS
       LRR_4   21 klpnLkeLdLsgNnli 36  
                   ++ Lk+Ld+s+N +i
  KOO23880.1 2713 DNKTLKQLDISNN-PI 2727
                  4777999999555.76 PP

  == domain 10  score: -2.6 bits;  conditional E-value: 2.4
                  -EEE-.-S--- CS
       LRR_4   26 keLdLsgNnli 36  
                  +eL++  Nn++
  KOO23880.1 2796 QELNV-KNNQL 2805
                  45555.55555 PP

  == domain 11  score: 18.4 bits;  conditional E-value: 5.9e-07
                  S--EEE--SS---E-S-HHH.-TT--EEE-.-S-----G CS
       LRR_4    2 nLevLdLsnNqltdipllek.lpnLkeLdLsgNnlitdl 39  
                  n ++L L  N+lt ip+l + +++L++++L++N +i  l
  KOO23880.1 2878 NVRSLALDRNRLTGIPSLIGtMTSLRKISLHSN-QIIEL 2915
                  7899999*9********9988*********666.88777 PP

  == domain 12  score: 18.8 bits;  conditional E-value: 4.6e-07
                  SS--EEE--SS---E-S-.HHH-TT--EEE-.-S-----G CS
       LRR_4    1 pnLevLdLsnNqltdipl.leklpnLkeLdLsgNnlitdl 39  
                  + Le LdL+ N ++ +p  +++l  L +LdLs+N +++ l
  KOO23880.1 2923 TALEALDLHKNSIKVLPAtIGNLRALNKLDLSEN-RLQEL 2961
                  579***************8888*********999.55544 PP

  == domain 13  score: 5.3 bits;  conditional E-value: 0.0082
                  --EEE--SS---E-S-HH...H-TT--EEE-.- CS
       LRR_4    3 LevLdLsnNqltdiplle...klpnLkeLdLsg 32  
                   ++LdLs +++  +pll+   ++++ ++Ld+ +
  KOO23880.1 3618 ITSLDLSCTKIDGFPLLQafkGNTSVTSLDV-R 3649
                  589*************777746********8.4 PP

>> LRR_6  Leucine Rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.1   0.0      0.35   1.3e+03       7      16 ..      62      71 ..      58      72 .. 0.89
   2 !    7.0   0.0     0.002       7.1       2      22 ..      85     105 ..      84     107 .. 0.87
   3 !    6.2   0.1    0.0034        12       5      16 ..     116     127 ..     114     128 .. 0.89
   4 ?   -1.2   0.1      0.81   2.9e+03       2      16 ..    2048    2062 ..    2047    2064 .. 0.90
   5 !    7.3   0.1    0.0016       5.7       2      15 ..    2076    2089 ..    2075    2090 .. 0.89
   6 !    6.5   0.5    0.0028       9.9       2      20 ..    2109    2127 ..    2108    2128 .. 0.92
   7 ?    4.0   0.2     0.018        63       2      18 ..    2447    2463 ..    2446    2466 .. 0.89
   8 ?   -0.7   0.0      0.56     2e+03       3      13 ..    2551    2561 ..    2549    2566 .. 0.83
   9 ?   -3.3   0.0       3.9   1.4e+04       2      12 ..    2576    2586 ..    2576    2586 .. 0.87
  10 !   16.7   0.0   1.4e-06    0.0052       2      24 .]    2714    2736 ..    2713    2736 .. 0.94
  11 !   12.5   0.0   3.2e-05      0.11       2      23 ..    2792    2813 ..    2791    2814 .. 0.94
  12 ?   -0.8   0.0      0.61   2.2e+03       5      18 ..    2822    2835 ..    2821    2835 .. 0.87
  13 ?   -3.8   0.1         5   1.8e+04       3      15 ..    2900    2912 ..    2899    2912 .. 0.91
  14 ?   -1.3   0.1      0.86   3.1e+03       5      15 ..    2948    2958 ..    2946    2959 .. 0.87
  15 ?    3.5   0.0     0.026        93       5      23 ..    3589    3607 ..    3587    3607 .. 0.93
  16 !    5.0   0.1    0.0084        30       3      16 ..    3616    3629 ..    3614    3630 .. 0.89
  17 ?   -1.5   0.0         1   3.7e+03       2      11 ..    3640    3649 ..    3639    3649 .. 0.89
  18 ?   -1.9   0.1       1.4   5.1e+03       1      11 [.    3712    3722 ..    3712    3727 .. 0.88

  Alignments for each domain:
  == domain 1  score: -0.1 bits;  conditional E-value: 0.35
       LRR_6  7 eLdLsgNdIg 16
                 LdLs N++g
  KOO23880.1 62 ILDLSRNKLG 71
                69******98 PP

  == domain 2  score: 7.0 bits;  conditional E-value: 0.002
       LRR_6   2 nthLteLdLsgNdIgDeGaea 22 
                 ++ L +L+L++N++g +G+  
  KOO23880.1  85 CPLLHTLHLQYNQLGVQGGVL 105
                 7789************99875 PP

  == domain 3  score: 6.2 bits;  conditional E-value: 0.0034
       LRR_6   5 LteLdLsgNdIg 16 
                 L++LdLs+N++ 
  KOO23880.1 116 LKYLDLSHNNLC 127
                 9*********75 PP

  == domain 4  score: -1.2 bits;  conditional E-value: 0.81
       LRR_6    2 nthLteLdLsgNdIg 16  
                  n+ +++  +s+N+I+
  KOO23880.1 2048 NNMVESITVSHNEIT 2062
                  88899999*****97 PP

  == domain 5  score: 7.3 bits;  conditional E-value: 0.0016
       LRR_6    2 nthLteLdLsgNdI 15  
                  + +L++LdLs+N++
  KOO23880.1 2076 CKSLKALDLSDNGL 2089
                  889*********98 PP

  == domain 6  score: 6.5 bits;  conditional E-value: 0.0028
       LRR_6    2 nthLteLdLsgNdIgDeGa 20  
                  n +Lt L+L+ N++g +G+
  KOO23880.1 2109 NVTLTDLNLNENKLGQVGV 2127
                  88*************9997 PP

  == domain 7  score: 4.0 bits;  conditional E-value: 0.018
       LRR_6    2 nthLteLdLsgNdIgDe 18  
                  nt L+ L+Ls  ++g++
  KOO23880.1 2447 NTMLECLNLSNTGLGNA 2463
                  9************9986 PP

  == domain 8  score: -0.7 bits;  conditional E-value: 0.56
       LRR_6    3 thLteLdLsgN 13  
                  + L+ LdL+gN
  KOO23880.1 2551 CPLKFLDLRGN 2561
                  6699******9 PP

  == domain 9  score: -3.3 bits;  conditional E-value: 3.9
       LRR_6    2 nthLteLdLsg 12  
                  n +Lt++d+++
  KOO23880.1 2576 NESLTSVDIRD 2586
                  789*****985 PP

  == domain 10  score: 16.7 bits;  conditional E-value: 1.4e-06
       LRR_6    2 nthLteLdLsgNdIgDeGaeaLa 24  
                  n +L+ Ld+s N Ig eG+  +a
  KOO23880.1 2714 NKTLKQLDISNNPIGAEGVALIA 2736
                  99*****************9887 PP

  == domain 11  score: 12.5 bits;  conditional E-value: 3.2e-05
       LRR_6    2 nthLteLdLsgNdIgDeGaeaL 23  
                  n++++eL+++ N++g +G+ a+
  KOO23880.1 2792 NRTMQELNVKNNQLGASGIAAI 2813
                  9******************998 PP

  == domain 12  score: -0.8 bits;  conditional E-value: 0.61
       LRR_6    5 LteLdLsgNdIgDe 18  
                  L+ Ld++ N++g++
  KOO23880.1 2822 LRLLDVARNGLGGD 2835
                  778********985 PP

  == domain 13  score: -3.8 bits;  conditional E-value: 5
       LRR_6    3 thLteLdLsgNdI 15  
                  t+L++ +L +N+I
  KOO23880.1 2900 TSLRKISLHSNQI 2912
                  79*********98 PP

  == domain 14  score: -1.3 bits;  conditional E-value: 0.86
       LRR_6    5 LteLdLsgNdI 15  
                  L +LdLs N +
  KOO23880.1 2948 LNKLDLSENRL 2958
                  789******87 PP

  == domain 15  score: 3.5 bits;  conditional E-value: 0.026
       LRR_6    5 LteLdLsgNdIgDeGaeaL 23  
                  +t+L+L++ d+g eGa aL
  KOO23880.1 3589 VTSLHLASADFGREGALAL 3607
                  69**************998 PP

  == domain 16  score: 5.0 bits;  conditional E-value: 0.0084
       LRR_6    3 thLteLdLsgNdIg 16  
                  +++t+LdLs+ +I+
  KOO23880.1 3616 CTITSLDLSCTKID 3629
                  89*********997 PP

  == domain 17  score: -1.5 bits;  conditional E-value: 1
       LRR_6    2 nthLteLdLs 11  
                  nt++t+Ld++
  KOO23880.1 3640 NTSVTSLDVR 3649
                  9*******96 PP

  == domain 18  score: -1.9 bits;  conditional E-value: 1.4
       LRR_6    1 snthLteLdLs 11  
                  +n ++te+dL+
  KOO23880.1 3712 HNKTVTEVDLT 3722
                  89********7 PP

>> SH3_3  Bacterial SH3 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   0.1   1.2e-06    0.0042       3      44 ..     579     640 ..     576     642 .. 0.84

  Alignments for each domain:
  == domain 1  score: 17.3 bits;  conditional E-value: 1.2e-06
       SH3_3   3 lnvRsgPstssevigtlpyGekVevleetggge...................Wykv.rtddg 44 
                  n+R+gP+  s++++ +p+   V vlee  g++                   W++v ++++g
  KOO23880.1 579 INCRDGPDNTSKKLDDIPKDALVRVLEEKVGADgkmwawlakgdsqvkepigWIQVsKEHKG 640
                 49**********************************88777777777777777777555555 PP

>> LRR_1  Leucine Rich Repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.5   0.0      0.91   3.3e+03       4      19 ..      62      77 ..      59      81 .. 0.74
   2 ?   -2.7   0.0       4.9   1.8e+04       2      12 ..      88      98 ..      88     108 .. 0.84
   3 ?    7.2   0.0    0.0027       9.8       2      17 ..     116     131 ..     115     135 .. 0.86
   4 ?    3.0   0.0     0.063   2.3e+02       1      16 [.    2078    2093 ..    2078    2100 .. 0.86
   5 ?   -2.7   0.1       4.8   1.7e+04       2      15 ..    2112    2125 ..    2111    2129 .. 0.81
   6 ?   -3.3   0.1         5   1.8e+04       2      12 ..    2450    2460 ..    2450    2465 .. 0.81
   7 ?   -0.7   0.0       1.1   3.8e+03       2      13 ..    2553    2564 ..    2553    2572 .. 0.81
   8 ?    3.5   0.0     0.044   1.6e+02       2      12 ..    2717    2727 ..    2716    2747 .. 0.83
   9 ?   -3.4   0.0         5   1.8e+04       3      13 ..    2796    2806 ..    2796    2813 .. 0.80
  10 ?   -3.6   0.0         5   1.8e+04       2      13 ..    2822    2833 ..    2822    2836 .. 0.86
  11 ?   -2.5   0.1         4   1.4e+04       1      17 [.    2878    2894 ..    2878    2895 .. 0.86
  12 ?   -0.4   2.4      0.84     3e+03      16      16 ..    2938    2938 ..    2901    2973 .. 0.57

  Alignments for each domain:
  == domain 1  score: -0.5 bits;  conditional E-value: 0.91
       LRR_1  4 hLdLsnnpllglppns 19
                 LdLs+n l+   +++
  KOO23880.1 62 ILDLSRNKLGVGFAET 77
                69******97666555 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 4.9
       LRR_1  2 LrhLdLsnnpl 12
                L +L+L +n+l
  KOO23880.1 88 LHTLHLQYNQL 98
                889******98 PP

  == domain 3  score: 7.2 bits;  conditional E-value: 0.0027
       LRR_1   2 LrhLdLsnnpllglpp 17 
                 L++LdLs+n+l g++p
  KOO23880.1 116 LKYLDLSHNNLCGITP 131
                 9**********77665 PP

  == domain 4  score: 3.0 bits;  conditional E-value: 0.063
       LRR_1    1 nLrhLdLsnnpllglp 16  
                  +L+ LdLs+n l++l+
  KOO23880.1 2078 SLKALDLSDNGLDRLT 2093
                  69*********97765 PP

  == domain 5  score: -2.7 bits;  conditional E-value: 4.8
       LRR_1    2 LrhLdLsnnpllgl 15  
                  L+ L+L+ n l++ 
  KOO23880.1 2112 LTDLNLNENKLGQV 2125
                  888******99876 PP

  == domain 6  score: -3.3 bits;  conditional E-value: 5
       LRR_1    2 LrhLdLsnnpl 12  
                  L+ L+Lsn  l
  KOO23880.1 2450 LECLNLSNTGL 2460
                  899***99776 PP

  == domain 7  score: -0.7 bits;  conditional E-value: 1.1
       LRR_1    2 LrhLdLsnnpll 13  
                  L+ LdL++n +l
  KOO23880.1 2553 LKFLDLRGNVGL 2564
                  899******765 PP

  == domain 8  score: 3.5 bits;  conditional E-value: 0.044
       LRR_1    2 LrhLdLsnnpl 12  
                  L+ Ld+snnp+
  KOO23880.1 2717 LKQLDISNNPI 2727
                  999*******8 PP

  == domain 9  score: -3.4 bits;  conditional E-value: 5
       LRR_1    3 rhLdLsnnpll 13  
                  ++L++ nn+l+
  KOO23880.1 2796 QELNVKNNQLG 2806
                  68******984 PP

  == domain 10  score: -3.6 bits;  conditional E-value: 5
       LRR_1    2 LrhLdLsnnpll 13  
                  Lr Ld+ +n l+
  KOO23880.1 2822 LRLLDVARNGLG 2833
                  899*****9984 PP

  == domain 11  score: -2.5 bits;  conditional E-value: 4
       LRR_1    1 nLrhLdLsnnpllglpp 17  
                  n r+L L +n+l+g+p+
  KOO23880.1 2878 NVRSLALDRNRLTGIPS 2894
                  668999******99986 PP

  == domain 12  score: -0.4 bits;  conditional E-value: 0.84
       LRR_1   16 p 16  
                  +
  KOO23880.1 2938 L 2938
                  1 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (3777 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       725  (0.0404373); expected 358.6 (0.02)
Passed bias filter:                      435  (0.0242624); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 1.51u 0.32s 00:00:01.83 Elapsed: 00:00:00.47
# Mc/sec: 24145.91
//
Query:       KOO23881.1  [L=124]
Description: hypothetical protein Ctob_003374 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.23   11.5   2.8          1    9.4   0.7    2.1  2  DUF4033   Domain of unknown function (DUF4033)
        3.3    8.9  11.0        5.9    8.1   2.8    3.1  3  Fer4_3    4Fe-4S binding domain


Domain annotation for each model (and alignments):
>> DUF4033  Domain of unknown function (DUF4033)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.8   0.1     0.026   2.4e+02      43      61 ..      58      76 ..      53      81 .. 0.85
   2 ?    9.4   0.7   0.00011         1      40      65 ..      94     119 ..      91     121 .. 0.93

  Alignments for each domain:
  == domain 1  score: 1.8 bits;  conditional E-value: 0.026
     DUF4033 43 gvCvnlCklptqkffkeel 61
                 +C ++C+    +f +e l
  KOO23881.1 58 PLCFQTCRFSRGRFCREAL 76
                58*******9999999987 PP

  == domain 2  score: 9.4 bits;  conditional E-value: 0.00011
     DUF4033  40 gCagvCvnlCklptqkffkeelGlpl 65 
                 gCa +C ++C+    +f +e+l lpl
  KOO23881.1  94 GCAPLCFQTCRFSRSRFCRETLLLPL 119
                 7********************99987 PP

>> Fer4_3  4Fe-4S binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.1       1.9   1.7e+04      11      12 ..      26      27 ..      24      28 .. 0.71
   2 ?    5.4   0.2    0.0047        43       2      12 ..      46      65 ..      46      69 .. 0.76
   3 ?    8.1   2.8   0.00066       5.9       1      12 [.      92     104 ..      92     107 .. 0.90

  Alignments for each domain:
  == domain 1  score: -2.8 bits;  conditional E-value: 1.9
      Fer4_3 11 CP 12
                CP
  KOO23881.1 26 CP 27
                88 PP

  == domain 2  score: 5.4 bits;  conditional E-value: 0.0047
      Fer4_3  2 tgCg.........aCvevCP 12
                tgC          +C++ C+
  KOO23881.1 46 TGCFgrgglggkpLCFQTCR 65
                57844667888889*****7 PP

  == domain 3  score: 8.1 bits;  conditional E-value: 0.00066
      Fer4_3   1 CtgCg.aCvevCP 12 
                 C+gC  +C++ C+
  KOO23881.1  92 CLGCApLCFQTCR 104
                 ****879*****7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (124 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       252  (0.0140554); expected 358.6 (0.02)
Passed bias filter:                      140  (0.00780858); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.37u 0.22s 00:00:00.59 Elapsed: 00:00:00.39
# Mc/sec: 949.75
//
Query:       KOO23882.1  [L=417]
Description: sam domain and hd 1 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (417 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       481  (0.026828); expected 358.6 (0.02)
Passed bias filter:                      435  (0.0242624); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.45u 0.25s 00:00:00.70 Elapsed: 00:00:00.39
# Mc/sec: 3185.79
//
Query:       KOO23883.1  [L=2555]
Description: tRNA 2 -phosphotransferase 1 isoform 1 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.4e-31  108.7   0.0    8.1e-31  107.5   0.0    1.7  1  PTS_2-RNA   RNA 2'-phosphotransferase, Tpt1 / KptA family
    1.8e-05   24.7   0.1    7.7e-05   22.7   0.0    2.1  2  NACHT       NACHT domain
     0.0035   17.4   3.4     0.0035   17.4   3.4    4.3  4  TPR_MLP1_2  TPR/MLP1/MLP2-like protein
  ------ inclusion threshold ------
      0.038   14.0   0.0          1    9.6   0.0    2.9  3  LRR_6       Leucine Rich repeat


Domain annotation for each model (and alignments):
>> PTS_2-RNA  RNA 2'-phosphotransferase, Tpt1 / KptA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  107.5   0.0   1.8e-34   8.1e-31       3     181 .]     347     554 ..     345     554 .. 0.80

  Alignments for each domain:
  == domain 1  score: 107.5 bits;  conditional E-value: 1.8e-34
   PTS_2-RNA   3 evqlskaLsyiLRhgaekegLkiredGyvkvedlLelp..................klkslkvtleeikevVesndKqRFelvelee.lliranqghsi 82 
                  v+lsk Ls +LRh+a + g+++++dG+v ++  Le                      ++lk+t++++ke+V++ +  RFel + +    ira +gh+i
  KOO23883.1 347 LVRLSKLLSNLLRHHAVRVGVQMEKDGWVTIKAALEYVnhgpgvaddgrweslqgpVGERLKYTEDHLKELVNTGEVCRFELSYTTPiPRIRAYEGHTI 445
                 589*********************************5545666666665544444322355699*****************996655589********9 PP

   PTS_2-RNA  83 kkves.selllepi.esaee......lpevvvHgTylkawe...silasggLkrmsrnhihlatglpgekevisgmrksaevliyidvekaladgikfy 170
                 +++ s  +  ++ + +++++      + e + HgTyl+ +e    il ++gL+ msrn +h+ +g+ ge++++sgmr++++ +++++v++a+++g++fy
  KOO23883.1 446 TTIPSlMKPGVRLVvDEPADgystlaAVEYALHGTYLEVLEgesGIL-KRGLSTMSRNFVHFGKGIRGEANIVSGMRADCTAYVWVNVHRAIRAGLEFY 543
                 776330222233333333323334334568********997333599.99************************************************* PP

   PTS_2-RNA 171 vsengviLteG 181
                    ng+i+++G
  KOO23883.1 544 ELGNGTIVCPG 554
                 *********98 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.0       1.4   6.3e+03      84     115 ..     323     360 ..     277     365 .. 0.61
   2 !   22.7   0.0   1.7e-08   7.7e-05      79     163 ..    2059    2135 ..    2000    2138 .. 0.83

  Alignments for each domain:
  == domain 1  score: -3.1 bits;  conditional E-value: 1.4
                 E......EEEE-STT-SS-TCH.........HHHHHCT CS
       NACHT  84 L......lilDglDelvtdlgqkekqpvrtlLselirk 115
                 +      l+ D+++ ++t  ++k   ++ +lLs+l+r 
  KOO23883.1 323 WqraklyLVGDSVEPTATSEPPKPLVRLSKLLSNLLRH 360
                 25555558999999999988886677778888888876 PP

  == domain 2  score: 22.7 bits;  conditional E-value: 1.7e-08
                  SCCCEEEEEE-STT-SS-TCH.........HHHHHCTTTTT--E.EEEEEECCCHHHHCTTSSCE....EEEE--TCCHHHHHHHHCT CS
       NACHT   79 lperlLlilDglDelvtdlgqkekqpvrtlLselirkkllpeas.llltvrpralrdleeqleea..ivlevegfsesrrkqlvrkyf 163 
                   ++r++l+lDg+De+ +  ++         +++ + + l p+ + l++t+rp+++   +e+++++  ++le+++++  + +++v++ +
  KOO23883.1 2059 TARRAVLLLDGIDEAGRARDA---------IERHVAEVLAPQGHvLIVTSRPNGV--SKELFSTKgyHHLELRPLTPGQQTEVVERRL 2135
                  467888***********8888.........777777777776551678*******..99***********************997755 PP

>> TPR_MLP1_2  TPR/MLP1/MLP2-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.3  21.0         4   1.8e+04      53     113 ..     171     233 ..     156     238 .. 0.74
   2 ?  -13.3  20.6         4   1.8e+04       5      88 ..     231     312 ..     227     336 .. 0.62
   3 !   17.4   3.4   7.8e-07    0.0035      39     113 ..    1413    1488 ..    1377    1492 .. 0.92
   4 ?   -2.3   0.4      0.96   4.3e+03      55      94 ..    1623    1662 ..    1620    1682 .. 0.83

  Alignments for each domain:
  == domain 1  score: -4.3 bits;  conditional E-value: 4
  TPR_MLP1_2  53 aedvkelqalreelnelkaeiaelkaeaesakaele..eseesweeqkeelekelselekrie 113
                 a+++ e  a+r+ ++ +++e+  +++ea++a++e +  e+e +we qk e + + + l ++ie
  KOO23883.1 171 ASEMAEEDAARATADAAEQEADAAEQEADAAEQEADaaEQETAWEAQKVEAQAQAAALVAQIE 233
                 555666677888888888888888888888877765114556799999998888888887776 PP

  == domain 2  score: -13.3 bits;  conditional E-value: 4
  TPR_MLP1_2   5 sleeeikslkeekeeaeaklqklqedlekqaeiakeaqqkYerelvkhaedvkelqalreelnelkaeiaelkaeaesakaele 88 
                 + e+e +++ e +++a+a+++ + +++ ++++ a++a+   ++     + +++  ++ ++  + ++++ ++l+++ e+  ++ +
  KOO23883.1 231 QIEAEEQAAAEAAAAAAAAAAPIADEIAEETAAAEAAKT--AEATAAAERAAERAANEKAARALARQRTRDLEKSPERSFKKRQ 312
                 667788888888888888888888888888888888777..4444444455566666666667777777777776655433322 PP

  == domain 3  score: 17.4 bits;  conditional E-value: 7.8e-07
  TPR_MLP1_2   39 keaqqkYerelvkhaedvkelqalreelnelkaeiaelk.aeaesakaeleeseesweeqkeelekelselekrie 113 
                  +e +++Y++ ++ h + ++  ++l+++  e+ +e++  k ae+e+ak++l +s++ +ee++ +l +  +++e+r  
  KOO23883.1 1413 AEVEDSYHTIVIAHPALATRQAELKQQRLEVAKELTACKvAEVEAAKEQLGASKADLEERQRALIEAQQKVESRTM 1488
                  6899************************99999999998689******************************9976 PP

  == domain 4  score: -2.3 bits;  conditional E-value: 0.96
  TPR_MLP1_2   55 dvkelqalreelnelkaeiaelkaeaesakaeleeseesw 94  
                  +++ l a r+el ++k ++   ++ea  a a+ e    +w
  KOO23883.1 1623 ELRLLDAERAELFDAKGQLGAREDEARLAAAKAEPGSDAW 1662
                  5667899999*********999999999999988877777 PP

>> LRR_6  Leucine Rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.5   0.1      0.19   8.5e+02       7      18 ..    2450    2461 ..    2448    2461 .. 0.89
   2 ?    9.6   0.0   0.00023         1       5      23 ..    2476    2494 ..    2474    2495 .. 0.94
   3 ?   -3.2   0.0       2.8   1.3e+04       3      14 ..    2506    2517 ..    2506    2518 .. 0.87

  Alignments for each domain:
  == domain 1  score: 0.5 bits;  conditional E-value: 0.19
       LRR_6    7 eLdLsgNdIgDe 18  
                  ++dL++N ++De
  KOO23883.1 2450 AVDLRDNRLNDE 2461
                  68********98 PP

  == domain 2  score: 9.6 bits;  conditional E-value: 0.00023
       LRR_6    5 LteLdLsgNdIgDeGaeaL 23  
                  Lt+L+++gN I  +Ga a+
  KOO23883.1 2476 LTKLNMAGNRIRSSGAAAI 2494
                  9***************998 PP

  == domain 3  score: -3.2 bits;  conditional E-value: 2.8
       LRR_6    3 thLteLdLsgNd 14  
                  +++te d s N 
  KOO23883.1 2506 RTVTEIDFSRNP 2517
                  589*******95 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (2555 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1786  (0.0996151); expected 358.6 (0.02)
Passed bias filter:                      568  (0.0316805); expected 358.6 (0.02)
Passed Vit filter:                       124  (0.00691617); expected 17.9 (0.001)
Passed Fwd filter:                        41  (0.0022868); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 1.81u 0.33s 00:00:02.14 Elapsed: 00:00:00.53
# Mc/sec: 14400.90
//
Query:       KOO23884.1  [L=308]
Description: glycosyl hydrolase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.4e-22   79.5   6.3    4.3e-22   78.7   6.3    1.5  1  Ricin_B_lectin   Ricin-type beta-trefoil lectin domain
    6.1e-11   42.9   7.7    3.4e-05   24.5   1.3    2.8  4  RicinB_lectin_2  Ricin-type beta-trefoil lectin domain-like
     0.0018   17.9   0.2       0.26   10.9   0.0    2.3  2  CDtoxinA         Cytolethal distending toxin A/C domain


Domain annotation for each model (and alignments):
>> Ricin_B_lectin  Ricin-type beta-trefoil lectin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   78.7   6.3   7.2e-26   4.3e-22       3     127 .]     176     301 ..     160     305 .. 0.92

  Alignments for each domain:
  == domain 1  score: 78.7 bits;  conditional E-value: 7.2e-26
                     EEEEETTTGEEEEETTCTTSTEBEEEEE-TSCCGGGEEEEETTSEEEETT.TTEEEEES...SSSTTSBEEEEETTTTSGGGCEEEETTTTEEEE CS
  Ricin_B_lectin   3 geirnvasgkCLdvegeskagapvglydChgskgkQlwtltkdgeirskaqselCldvs...staegakvvlakChkgkgnqrWefdkdgtqirh 94 
                     ++++n+ +g CLd+++++k+g+ v+++dC+ ++ +Qlw+l++d  +  + +++ Cl+     +++  ++vv + C+ + +nq W++d+ + q++ 
      KOO23884.1 176 VMLQNR-DGVCLDAKERHKNGGVVQTWDCDPTNLNQLWKLDSDTGLVKN-EDGVCLSDAsagNSPGPGPVVTWACDPTLKNQAWNYDPVTGQLKA 268
                     789999.**********************999777******77555554.4*****766687788889*************************** PP

                     TTTSEEEEESTTSSTTTBEEEEEE.TSSGGGBE CS
  Ricin_B_lectin  95 kksgkCLdvkgasksneklilkkcdsgsdsQkW 127
                     ++  +C+d+++++++ +k+ +++cd ++++Q+W
      KOO23884.1 269 RHGTLCIDASDRHTNGGKVMAWPCDVNNSNQQW 301
                     ************98777**************** PP

>> RicinB_lectin_2  Ricin-type beta-trefoil lectin domain-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.0       1.6   9.6e+03      36      54 ..      89     109 ..      79     129 .. 0.49
   2 !   21.5   0.3   4.9e-08   0.00029      15      89 .]     176     246 ..     165     246 .. 0.78
   3 !    5.0   0.1    0.0067        40      21      56 ..     224     261 ..     220     264 .. 0.69
   4 !   24.5   1.3   5.7e-09   3.4e-05       2      57 ..     254     306 ..     253     308 .] 0.85

  Alignments for each domain:
  == domain 1  score: -2.6 bits;  conditional E-value: 1.6
                      TEEEEEE-TT..T-GGCEEEE CS
  RicinB_lectin_2  36 ganvqqwtcs..gaanqqWrl 54 
                      g+ + q ++    ++  ++ +
       KOO23884.1  89 GTWMSQGNWRsgFDDTLRFSI 109
                      444444444422333444444 PP

  == domain 2  score: 21.5 bits;  conditional E-value: 4.9e-08
                      EEEECTSSSEEEECGCCTBCTTEEEEEE-TT.T-GGCEEEEECCESSEEEEEETTTTEEEEECGCS-STT.EEEEEE CS
  RicinB_lectin_2  15 ytiknvasgkvLdvaggstanganvqqwtcs.gaanqqWrledtgdgtyrivnkasgkvLdvaggstanG.tnvqqw 89 
                      + ++n+ +g +Ld+++ +++ g  vq+w+c+ ++ nq+W+l+    +   +v +  g +L  a++++++G  +v +w
       KOO23884.1 176 VMLQNR-DGVCLDAKERHKN-GGVVQTWDCDpTNLNQLWKLD----SDTGLVKNEDGVCLSDASAGNSPGpGPVVTW 246
                      566666.8*********996.99********9999******4....4457888899988877777777776666655 PP

  == domain 3  score: 5.0 bits;  conditional E-value: 0.0067
                      SSSEEE.ECGCCTBCTTEEEEEE-TT.T-GGCEEEEEC CS
  RicinB_lectin_2  21 asgkvL.dvaggstanganvqqwtcs.gaanqqWrled 56 
                       +g +L d+++g+      v++w+c+ + +nq W  ++
       KOO23884.1 224 EDGVCLsDASAGNSPGPGPVVTWACDpTLKNQAWNYDP 261
                      57999975555544445678888888799*****8765 PP

  == domain 4  score: 24.5 bits;  conditional E-value: 5.7e-09
                      CGEEEECETTTTEEEEECTSSSEEEECGCCTBCTTEEEEEE-TT.T-GGCEEEEECC CS
  RicinB_lectin_2   2 nQqWtlgsggdgyytiknvasgkvLdvaggstanganvqqwtcs.gaanqqWrledt 57 
                      nQ W+ +     + ++k+++ ++++d+++ +t+ g +v  w+c+ ++ nqqW l++ 
       KOO23884.1 254 NQAWNYD-PV--TGQLKARHGTLCIDASDRHTN-GGKVMAWPCDvNNSNQQWNLRKI 306
                      9*****3.22..369*****************7.89999999999********9765 PP

>> CDtoxinA  Cytolethal distending toxin A/C domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.9   0.0   4.4e-05      0.26      53      95 ..     175     219 ..     161     255 .. 0.66
   2 !    5.5   0.1     0.002        12      74     141 ..     244     303 ..     220     308 .] 0.67

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 4.4e-05
                 -EEEEETTT--EEEE...ETTEEEEE-..--TT-GGG-EEEEEBTTS CS
    CDtoxinA  53 lvqfknvdegtClaa...yenGvialkk.CdeddketvFsliptttg 95 
                 +v+++n  +g Cl a    +nG + ++  Cd ++++++++l  ++tg
  KOO23884.1 175 TVMLQNR-DGVCLDAkerHKNGGVVQTWdCDPTNLNQLWKLD-SDTG 219
                 4444443.456***988855655555555**********983.4444 PP

  == domain 2  score: 5.5 bits;  conditional E-value: 0.002
                 EE-.--TT-GGG-EEEEEBTTS-EEEEETTT--EEEE-SS-SS.S-B-EEEE-----EETTEE--EEE CS
    CDtoxinA  74 alkkCdeddketvFsliptttgavqikslssgeCitanflsrlpiaktltlekCdlakevnleqlwli 141
                    +Cd + k++ ++  p t    q+k  + + Ci a++ ++     ++   +Cd    +n +q+w +
  KOO23884.1 244 VTWACDPTLKNQAWNYDPVTG---QLKARHGTLCIDASDRHT--NGGKVMAWPCDV---NNSNQQWNL 303
                 445577777777777777764...677777788887777775..477777777743...445555544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (308 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       287  (0.0160076); expected 358.6 (0.02)
Passed bias filter:                      238  (0.0132746); expected 358.6 (0.02)
Passed Vit filter:                        11  (0.000613531); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.45u 0.25s 00:00:00.70 Elapsed: 00:00:00.42
# Mc/sec: 2185.25
//
Query:       KOO23885.1  [L=1965]
Description: hypothetical protein Ctob_006078 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.6e-07   29.8   0.1    9.2e-07   28.5   0.1    1.7  1  LRR_8     Leucine rich repeat
    3.5e-05   24.1   1.0    9.7e-05   22.7   0.0    2.3  2  LRR_4     Leucine Rich repeats (2 copies)


Domain annotation for each model (and alignments):
>> LRR_8  Leucine rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.5   0.1     1e-10   9.2e-07       6      59 ..      91     144 ..      88     145 .. 0.88

  Alignments for each domain:
  == domain 1  score: 28.5 bits;  conditional E-value: 1e-10
                 EE-TTS--SEE-TTSSTT-TT--EEE--SS---GGGGGGGTT--S-.EEE--SS CS
       LRR_8   6 LdLsnNrltslddeaFkglsnLkvLdLsnNllttlspgafsgLpsLrsLdLsgN 59 
                 + L +N+l +  d+a  gl+ L++LdLs N lt   p a ++Lp+L++LdL+++
  KOO23885.1  91 VLLPSNNLIGPLDGALCGLPFLQHLDLSGNALTGSLPSAADCLPRLTYLDLTQT 144
                 567788877777888889****************99***************976 PP

>> LRR_4  Leucine Rich repeats (2 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.7   0.0   1.1e-08   9.7e-05       3      32 ..     112     143 ..     110     150 .. 0.87
   2 ?   -4.1   0.4         2   1.8e+04      18      27 ..    1488    1497 ..    1484    1499 .. 0.46

  Alignments for each domain:
  == domain 1  score: 22.7 bits;  conditional E-value: 1.1e-08
                 --EEE--SS---.E-S-HHH.-TT--EEE-.- CS
       LRR_4   3 LevLdLsnNqlt.dipllek.lpnLkeLdLsg 32 
                 L++LdLs+N lt ++p+ +  lp L++LdL++
  KOO23885.1 112 LQHLDLSGNALTgSLPSAADcLPRLTYLDLTQ 143
                 9****************8866*********55 PP

  == domain 2  score: -4.1 bits;  conditional E-value: 2
                  -HHH-TT--E CS
       LRR_4   18 lleklpnLke 27  
                   l+kl +L++
  KOO23885.1 1488 KLQKLQKLQK 1497
                  3444444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1965 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1788  (0.0997267); expected 358.6 (0.02)
Passed bias filter:                      937  (0.0522617); expected 358.6 (0.02)
Passed Vit filter:                       118  (0.00658152); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 1.37u 0.36s 00:00:01.73 Elapsed: 00:00:00.52
# Mc/sec: 11410.82
//
Query:       KOO23886.1  [L=409]
Description: hypothetical protein Ctob_006077 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.2e-12   46.9   2.3    5.1e-12   45.7   2.3    1.6  1  LtrA      Bacterial low temperature requirement A protein (Lt


Domain annotation for each model (and alignments):
>> LtrA  Bacterial low temperature requirement A protein (LtrA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.7   2.3   2.8e-16   5.1e-12      48     277 ..       1     260 [.       1     321 [. 0.68

  Alignments for each domain:
  == domain 1  score: 45.7 bits;  conditional E-value: 2.8e-16
        LtrA  48 vgftwlanrfdtddvvvrllllvqmaavlvlalsipeafeerg.............lvfalayvvmrlvlvlqylr......aaradpkls.arrlarv 126
                 +g t++ +r+dtd+   r+  +++m ++  +a +++ + ++ +              +f+l+y ++r vl + yl       + r+++++s    +++ 
  KOO23886.1   1 MGRTFFNTRYDTDSATARISAILGMTGFTAMAFGVRCTSNDDSvlvcddnelhsvsSIFILGYGAVRSVLWINYLAvycalpSKRSNQYSSpDSITVKG 99 
                 57799***********************************999*******************************9988877655555554465666777 PP

        LtrA 127 yaagllisavlwlagallpgs....arlvlwlvallielllvPllarkrttpvhaeHlaERygLfvIIaLGEsvva..lgaglseqe.....lsvevll 214
                 +++g+ +s+++ +++  l ++    ar+ l+l a+++++ ++P +   ++  +  +Hl  R+g f++I+   svva  l   l++         +++  
  KOO23886.1 100 MLTGFGFSLLCCFLASGLRKPkdadARFCLFLTAVVVDF-VTPFVLIPYMPAIRIHHLMGRFGRFLLICVNASVVAplLEMPLHGGRvnlfsPLLALWP 197
                 7999999988766666656666899**************.89**999999**************************66333333333222111122222 PP

        LtrA 215 aavlglvlaaalwwlYFdvdaaaaehaltsar...rarlarsaygylhllivagiillavglelll 277
                  ++l+ + +a +  l  ++   + eh ++s +     ++  + + ylhl++++ i +l   +    
  KOO23886.1 198 PFCLIQLHSAPIGGLLTSS---RVEHFHRSYEgttIRKIRIYGFFYLHLPLTLLISALFTRMPPWD 260
                 2233333333333333333...33333333334445577778999999999988877766554443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (409 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       441  (0.024597); expected 358.6 (0.02)
Passed bias filter:                      315  (0.0175693); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.28s 00:00:00.77 Elapsed: 00:00:00.43
# Mc/sec: 2839.98
//
Query:       KOO23887.1  [L=1224]
Description: hypothetical protein Ctob_006075 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
  ------ inclusion threshold ------
      0.057   13.4   0.4        1.4    8.9   0.1    3.1  3  Tricorn_PDZ  Tricorn protease PDZ domain


Domain annotation for each model (and alignments):
>> Tricorn_PDZ  Tricorn protease PDZ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.1   0.0     0.043   7.8e+02      37      82 ..     860     902 ..     857     907 .. 0.83
   2 ?   -2.0   0.0       0.2   3.5e+03      47      69 ..    1082    1104 ..    1034    1116 .. 0.67
   3 ?    8.9   0.1     8e-05       1.4      37      76 ..    1175    1214 ..    1171    1219 .. 0.84

  Alignments for each domain:
  == domain 1  score: 0.1 bits;  conditional E-value: 0.043
                  S---.TT-EEEEETTEE-BTTB-HHHHHHTTTTSEEEEEEE-STT- CS
  Tricorn_PDZ  37 GvnvreGdlilavdgepvskekgiaelLvgkagkeveLtvkrkdgk 82 
                  G    +Gd+ + v+g++ + +++  +  +g +g +v + +++k+g+
   KOO23887.1 860 GYG--VGDYAVFVEGVQADISQQTISFVTGVDG-PVHVALTPKEGE 902
                  555..7********************9999999.888888887775 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 0.2
                   EEETTEE-BTTB-HHHHHHTTTT CS
  Tricorn_PDZ   47 lavdgepvskekgiaelLvgkag 69  
                   + +d+e+v+++++  + L g++ 
   KOO23887.1 1082 IFIDDEEVEAKQKAGSFLQGASR 1104
                   44777777777777777776554 PP

  == domain 3  score: 8.9 bits;  conditional E-value: 8e-05
                   S---.TT-EEEEETTEE-BTTB-HHHHHHTTTTSEEEEEE CS
  Tricorn_PDZ   37 GvnvreGdlilavdgepvskekgiaelLvgkagkeveLtv 76  
                   G++ +   + ++vdg++v++   i+elL g +g +veL +
   KOO23887.1 1175 GIQHEPSMIKVKVDGVEVDSGVVIKELLKGSGGVDVELAL 1214
                   666555555589*************************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1224 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       520  (0.0290033); expected 358.6 (0.02)
Passed bias filter:                      342  (0.0190752); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.80u 0.29s 00:00:01.09 Elapsed: 00:00:00.48
# Mc/sec: 7599.27
//
Query:       KOO23888.1  [L=366]
Description: hypothetical protein Ctob_006074 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      1e-12   47.7  31.0      1e-12   47.7  31.0    2.0  2  MFS_1     Major Facilitator Superfamily


Domain annotation for each model (and alignments):
>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.7  31.0   5.6e-17     1e-12      37     324 ..       7     282 ..       2     292 .. 0.73
   2 ?    0.4   1.6     0.014   2.5e+02     135     178 ..     311     358 ..     303     366 .] 0.63

  Alignments for each domain:
  == domain 1  score: 47.7 bits;  conditional E-value: 5.6e-17
       MFS_1  37 lltlyalgaavaslplGrlsdrfGrrrvlllglllfalg.lllllfasslwlllvlrvlqGlgagalfpagaaliadwfpke......ergraigllsa 128
                 + ++ a++ +v s++lG lsd +Gr+ vlll+l++  +  ++++l +++l ++ ++ +++++g g++f ag+a++ad + +e        g  ++l+++
  KOO23888.1   7 ISSTSAAAEIVISPILGGLSDAIGRKTVLLLTLATATAVnFACAL-SPTLLPVGASKFVSSIGVGLFFLAGGAALADNYRDEpkrlaaASGPLFALVNL 104
                 556678888******************999999999999444444.466559****************************9666555555555566666 PP

       MFS_1 129 gfslGailgpllggllasslgWravfyilaivsllafvlfllllpeepperkrkspkeeekgtgpaplvpawkallkdpvlwillialllfffgfsgll 227
                 gf+lG++l +ll + l   +g ++v + +a++++ +      l++e+ p+++r++ +      + ++ +   ++l+  + + +l + ++l+     ++ 
  KOO23888.1 105 GFGLGIALSALLPPGLRVRYGASSVVLGAALATATC------LVRESLPQSQRVPFRAF----KSFNPFACVRLLCLGRSMRLLALLAALNV-LPLFMG 192
                 666666666666666666666666666666666666......55888888888877777....22333333666666665532333333332.333355 PP

       MFS_1 228 tllplylqevlglsglllaglllallalvgailallagrlsdrlgrrrrlllallllllaalglallavtssavllllvlvliGf.glgfvfpsllal 324
                  +l  ++ ++ +l+   +++ l++ +a+ g+ + +++g+l++r+g ++++ l+ +++ll+ lg+a  ++        ++lv++G+  lg ++++ ++ 
  KOO23888.1 193 DTLQAFAITHWHLG-PRSVSRLFSYIAVSGVLANMVGGQLVRRFGVQTFTALSTGSALLTWLGFASGNLR-------AALVCAGLgLLGPARTLGATT 282
                 55555555666666.677777788888888888*************999999999999999999999999.......899999998888876666555 PP

  == domain 2  score: 0.4 bits;  conditional E-value: 0.014
       MFS_1 135 ilgpllgg..llasslg.....Wravfyilaivsllafvlfllllpeeppe 178
                 i+gpll g  ++a   g      +a+f+i+ iv+l a+ l+ + l + +p+
  KOO23888.1 311 IIGPLLYGqaYMA---GmaagvPQAPFFINVIVTLAALGLGPMALAAAKPA 358
                 5666666633222...23444678889999999999866666666555544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (366 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       370  (0.020637); expected 358.6 (0.02)
Passed bias filter:                      178  (0.00992805); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.22s 00:00:00.69 Elapsed: 00:00:00.41
# Mc/sec: 2655.84
//
Query:       KOO23889.1  [L=561]
Description: polycystic kidney disease 2-like 2, partial [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    2.8e-61  207.5   0.0      4e-61  207.0   0.0    1.2  1  PKD_channel  Polycystin cation channel
    4.2e-06   26.2  10.9    4.2e-06   26.2  10.9    1.7  2  Ion_trans    Ion transport protein


Domain annotation for each model (and alignments):
>> PKD_channel  Polycystin cation channel
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  207.0   0.0   4.5e-65     4e-61       2     410 ..     121     561 .]     120     561 .] 0.84

  Alignments for each domain:
  == domain 1  score: 207.0 bits;  conditional E-value: 4.5e-65
                  .-STT--SHHHHHHHHTTHHHHTTTTS-B-SS......-S--EETTTEEEEEEEEEEEEEB-SS-S---TTTTTT---......------TTSB--.. CS
  PKD_channel   2 kglatvtdlediykwlesvLlpaltsnktlsa......eeesvileeslllGvprLRqlRvknssClvaekfvdeike......craaysldkedkke 87 
                  + +  v +l+diyk+l + Ll al+ + t ++      + ++vi  ++ llG++rL q+Rv+ +sC v+  f  +  +      c+aa+   k     
   KOO23889.1 121 MTFDDVASLDDIYKFLRGPLLAALYVETTRTGvplppsQMRKVIDGNNMLLGLVRLQQVRVRVDSCAVPSYFEVNGSSattiahCYAALPRGKAAADL 218
                  568899******************888887652222214567888899********************9998755444455666****9988888878 PP

                  .................S--TT--STTSS---TTTTT---EE-SSSEE-S-SEEEE--SSHHHHHHHHHHHHHTTSS-TTEEEEEEEEEEEETTTTEE CS
  PKD_channel  88 YsasWs...........kkvvdkskeafiykpekelegvkhwGvlasYpsgGYvvlLsssreeslkrlaeLkeknWLDrrtravfvdftlYnadinlf 174
                  +  +             + ++  +  +  + p    +     G+ ++Y+++GY v+L+     +++rl eL++   LD+ tra+ vdf+lYn++in f
   KOO23889.1 219 FDREPIvgqaavnvngeQAAGGGAPRTYEWMPSSVTKVGPFTGIHHQYDGAGYRVDLPLALSTARSRLLELEKDGFLDSSTRALWVDFALYNVNINRF 316
                  877765554444444433334444444444456666677889999***************************************************** PP

                  EEEEEEEE--TTSS-EEEEEEEEE------...SHHHHHHHHHHHHHHHHHHHHHHHHH-------.-------HHHHHHHHHHHHHHHHHHHHHHHH CS
  PKD_channel 175 cvvtllvEvpalGgvlpsvsvqsvkLlryv...tklslflllievvfvvfvlyfvveeilkirker.asylrsvwnlldlaivvlsvvlivlailrev 268
                  c v+ll+E   +G + p++ +q+ +Ll y+   ++   +lll+e +++ fv +f+ +e++++r+e+ +sy +++ n  d   ++ + +++  +  + +
   KOO23889.1 317 CTVRLLFERLESGLITPQATIQPLSLLWYDsldANGLPRLLLVESCLLGFVTFFIAYELQAMRREGlRSYWSDKSNWYDWPSLLGFFFVAFCRYRQWS 414
                  **************************98852225666688999*****************************99999998766666666655554444 PP

                  HHHHHHHHHH.....H-SSS----HHHHHHHHHHHHHHHHHHHHHHHGGGGG------------------------HHHHHHHHHHHHHHHHHHSSSS CS
  PKD_channel 269 lakkllkkve.....aekeefldFrevaqldqllriilavlvflttlkllkvlrfnktlslltktlaralkdvlgfalvivilflayaqlgvllfGtq 361
                  l   + + v       + + f++++ev  +++  +++la+  +l+ +k+l +l  ++ +s l +tl+ra+++++ f +++ il+ a+a+   l  Gtq
   KOO23889.1 415 LMRDIKRTVTldaedGQVDGFVSLDEVRDWAEYETMTLAIDSLLVYMKVLHFLAGVPYMSTLLRTLSRASSQLIYFLIILTILINAFAISFHLAAGTQ 512
                  44444433333100256678****************************************************************************** PP

                  -STTSSHHHHHHHHHHHHTT---HHHHHHH-TTHHHHHHHHHHHHHHHH CS
  PKD_channel 362 asnfsnlvksiltlfrlilgdfqytelesgnrvLGpllllalvflvifi 410
                   +++++l  s + l+  ilg ++  el+ +nrv Gpll++a+vf++ f+
   KOO23889.1 513 LHDWRDLGSSYMSLLFFILGVVDLFELHRANRVVGPLLYIAFVFVILFV 561
                  *********************************************9985 PP

>> Ion_trans  Ion transport protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.1      0.22     2e+03       6      20 ..      75      89 ..      60     105 .. 0.67
   2 !   26.2  10.9   4.7e-10   4.2e-06      38     223 ..     362     560 ..     337     561 .] 0.78

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 0.22
                HHHHHHHHHHHHHHH CS
   Ion_trans  6 lfilllillncvfla 20
                + i+l++ll++v++ 
  KOO23889.1 75 MYITLCVLLSSVVVL 89
                344555555555554 PP

  == domain 2  score: 26.2 bits;  conditional E-value: 4.7e-10
                 HHHHHHHHHHHHHHHHHHHHTHHHHHHHCHSHHHHHHHHHHHHHHHHH..........HHHH............................HHHHHHHHH CS
   Ion_trans  38 lelvftaiftlemllkilalgllikkrYlrdpwnilDflvvlpsllsl..........vlse............................esllllsvl 98 
                 + l f+ +f+   l  ++  gl   ++Y++d  n+ D+ ++l +++++          +  +                             +   l++ 
  KOO23889.1 362 CLLGFVTFFIAYELQAMRREGL---RSYWSDKSNWYDWPSLLGFFFVAfcryrqwslmR--DikrtvtldaedgqvdgfvsldevrdwaeYETMTLAID 455
                 4455777777777888888999...*********************8867666555550..15555666667777788888888999999888889999 PP

                 HHHGGGGGGHHHCHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCCCCSCCSTSSSTTTSSSSSSHHHHHHHHHHHHTTSSHHH CS
   Ion_trans  99 rlfrvlrllklisrleglrtlvtalirsvkdllnvlllllvvlfifaligvqlfkgklreknecaktwenpnngntnFdnfftallwlfrlmttegwgd 197
                 +l+  +++l+++  ++ ++tl+++l r+  +l+++l++l +++ +fa+ ++   +++l+                  ++++++++++l+  +   g  d
  KOO23889.1 456 SLLVYMKVLHFLAGVPYMSTLLRTLSRASSQLIYFLIILTILINAFAISFHLAAGTQLH-----------------DWRDLGSSYMSLLFFIL--GVVD 535
                 99999999999999999999***************************999666644444.................67889999999998555..5578 PP

                 HHHHHHHHSHHHHHHHHHHHHHHHHH CS
   Ion_trans 198 ilyatldekskvaliyfvifiilgsf 223
                 ++      +  v+ +++++f++++ f
  KOO23889.1 536 LFELHRANR-VVGPLLYIAFVFVILF 560
                 777766666.6666666666666555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (561 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       523  (0.0291706); expected 358.6 (0.02)
Passed bias filter:                      299  (0.0166769); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.52u 0.24s 00:00:00.76 Elapsed: 00:00:00.40
# Mc/sec: 4239.10
//
Query:       KOO23890.1  [L=471]
Description: eukaryotic translation initiation factor 2 subunit 3 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
      3e-36  123.5   0.3    9.3e-36  122.0   0.3    1.9  1  eIF2_C        Initiation factor eIF2 gamma, C terminal
    4.7e-23   81.7   1.9    3.2e-22   79.0   1.9    2.1  1  GTP_EFTU      Elongation factor Tu GTP binding domain
    2.4e-11   43.8   0.4    5.8e-11   42.6   0.4    1.7  1  GTP_EFTU_D2   Elongation factor Tu domain 2
     0.0019   18.1   0.2       0.02   14.8   0.1    2.2  2  RsgA_GTPase   RsgA GTPase
     0.0047   17.0   0.0      0.012   15.7   0.0    1.6  1  MMR_HSR1      50S ribosome-binding GTPase
  ------ inclusion threshold ------
       0.07   13.2   0.1       0.62   10.1   0.1    2.2  2  Dynamin_N     Dynamin family
        0.1   12.6   0.1       0.27   11.2   0.1    1.7  1  MMR_HSR1_Xtn  C-terminal region of MMR_HSR1 domain


Domain annotation for each model (and alignments):
>> eIF2_C  Initiation factor eIF2 gamma, C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  122.0   0.3   3.6e-39   9.3e-36       2      86 .]     371     460 ..     370     460 .. 0.95

  Alignments for each domain:
  == domain 1  score: 122.0 bits;  conditional E-value: 3.6e-39
                 EEEEEEEE-SBESSSSSC...CC..-----TTEEEEEEETTEEEEEEEEEEESSEEEEEEEEEEE-STTEEEEEEEEETTSEEEEEEEEE CS
      eIF2_C   2 eleieyellerlvgvkee...kk..veklkkkEvLmlniGsastggvvtsvkkdeakvkLkkPvcaekgekialsRrvekrWrLiGwGei 86 
                 e+e++y+ll+rl+gvk+    k+  v+kl+k+E+Lm+niGs+stgg++++v+ d+ak++L++Pvc++++ekialsRrv+k+WrLiGwGei
  KOO23890.1 371 EIEVSYYLLRRLLGVKTAdgeKQgkVQKLAKGEILMVNIGSTSTGGRIQAVRADLAKIALTAPVCTSEKEKIALSRRVDKHWRLIGWGEI 460
                 89**************996653377***************************************************************98 PP

>> GTP_EFTU  Elongation factor Tu GTP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   79.0   1.9   1.2e-25   3.2e-22       3     193 ..      46     245 ..      44     246 .. 0.81

  Alignments for each domain:
  == domain 1  score: 79.0 bits;  conditional E-value: 1.2e-25
                 EEEEEEEESTTSSHHHHHHHHHHHTTSSCHHHHHHHHHSTHCHSHHHHHHTSCSSCEEEEEE...............................TTCSSE CS
    GTP_EFTU   3 irnigiighvDhGKtTLtdrLlyktgaiskkgekaeeervlDtlkeErergiTiksaaisle...............................ketkky 70 
                 ++nig+ighv hGK+T++ ++   +                 + k+E er iTik   ++ +                               + +  +
  KOO23890.1  46 TINIGTIGHVAHGKSTVVKAISGVHTV---------------RFKNELERNITIKLGYANAKiyqckdpecprpgnfitrgssaedvvtqgkwTYELVR 129
                 68*****************99844444...............445666677777766666666667777777777777777777777787644355679 PP

                 EEEEEEESSSGGGHHHHHHHHHT-SEEEEEEETTTB.STHHHHHHHHHHHHTTTE.EEEEEESCGSTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTT CS
    GTP_EFTU  71 linliDtPGHvdFskevirglrvlDgavlvvdaveG.vepqteevlrlalkegvp.iivfiNKmDrlkaelkeiveevkqklsrkeeklekygekgeke 167
                 +++++D+PGH   + ++ +g++v+D a+l+++ +e  ++pqt e+l  +  ++++ ii++ NK+D +k+    +++e  + +      ++  +++    
  KOO23890.1 130 HVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNEPcPQPQTSEHLAAVEIMKLQhIIILQNKIDLVKEAAALQQHEDIKAF------VKGTVAD---S 219
                 9*********************************9879*****************999999******666555555555488......6555555...4 PP

                 EEEEEEBTTTTBTHHHHHHHHHHHSH CS
    GTP_EFTU 168 vpvvfgSalkgegvktllealvellp 193
                  pvv++Sa    +++ + e++++++p
  KOO23890.1 220 APVVPISAQLRYNIDVVAEYITTHIP 245
                 7***********************98 PP

>> GTP_EFTU_D2  Elongation factor Tu domain 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.6   0.4   2.3e-14   5.8e-11       1      73 [.     277     359 ..     277     360 .. 0.94

  Alignments for each domain:
  == domain 1  score: 42.6 bits;  conditional E-value: 2.3e-14
                  EEEEEEEEEESEEETTEEEEEEC.TCTTSEE.......EEEEEEEEEEETEEESEEETTSEEEEEEEESSCCS..GSSTTCEE CS
  GTP_EFTU_D2   1 GtvalgrvysGtlkkGdevrilg.ndtskke.......ivtrissletfhededeavaganaGvivaikgled..aiivGdtl 73 
                  G+va+g++ +G+lk G+e++i++   + + +         tri sl+++++d++ av+g+ +Gv+++i+++ +  + +vG++l
   KOO23890.1 277 GGVAGGSILQGVLKLGQEIEIRPgIISRGANgtvrcvpLFTRILSLFAEQNDLQYAVPGGLIGVGTLIDPTLTraDRLVGQVL 359
                  89*********************98886666****************************************999988999998 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.7   0.0      0.17   4.3e+02     105     125 ..      52      72 ..      24      85 .. 0.75
   2 !   14.8   0.1   7.9e-06      0.02      13     100 ..     150     243 ..     125     247 .. 0.72

  Alignments for each domain:
  == domain 1  score: 0.7 bits;  conditional E-value: 0.17
                  ECSTTSSHHHHHHHHCTT--- CS
  RsgA_GTPase 105 vGqSGvGKStLinallpelel 125
                  +G+   GKSt+++a+ + +++
   KOO23890.1  52 IGHVAHGKSTVVKAISGVHTV 72 
                  466667999999999886554 PP

  == domain 2  score: 14.8 bits;  conditional E-value: 7.9e-06
                  EES--EEEEEEESTTTT--HHHHHHHHHHHHHTT-EEEEEE.E-GGG--HHH......HHHHHHHHHHHTTSEEEE--TTTHTTHHHHHHHCTTS CS
  RsgA_GTPase  13 vaNvdqllivvslkepelslnlldrfLvlaeekgiepvivl.nKiDlleeee......eleelkeelealgyevllvsaktkegleelkellkdk 100
                  +a +d +l++++ +ep  ++++ +  L+++e  +++ +i+l nKiDl++e+       +++++ + + a   +v+ +sa+ + +++ ++e+++ +
   KOO23890.1 150 AAVMDAALLLIAGNEPCPQPQT-SEHLAAVEIMKLQHIIILqNKIDLVKEAAalqqheDIKAFVKGTVADSAPVVPISAQLRYNIDVVAEYITTH 243
                  7889**********88777766.56799999999966655549*******996664444555555555556777777777777777777777665 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.0   4.6e-06     0.012       2      88 ..      49     164 ..      48     198 .. 0.65

  Alignments for each domain:
  == domain 1  score: 15.7 bits;  conditional E-value: 4.6e-06
                 EEEEESTTSSHHHHHHHHHTS.TEEESSSTTSSSSEEEEEEE..ETTEE...................................EEEEECGGCSSHHHH CS
    MMR_HSR1   2 vaivGrpNvGKStLinaltge.kaivsdkpgtTrdinegrvk..lkgke...................................ielvDtpGliegase 62 
                 ++ +G+   GKSt+++a++g  +++ +++    ++i+ g  +  +   +                                   + +vD+pG  +    
  KOO23890.1  49 IGTIGHVAHGKSTVVKAISGVhTVRFKNELERNITIKLGYANakIY--QckdpecprpgnfitrgssaedvvtqgkwtyelvrhVSFVDCPG-HD---- 140
                 889*****************76677777775555555554442222..233356777788888888888888888888888888********.33.... PP

                 HHHHHHHHHHHHC.TSEEEEEEETTTT CS
    MMR_HSR1  63 ekglgkaflalee.adlillvvdasee 88 
                    l  ++l+    +d++ll++  + e
  KOO23890.1 141 --ILMATMLNGAAvMDAALLLIAGN-E 164
                 ..46666665444368888888633.3 PP

>> Dynamin_N  Dynamin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.1   0.00024      0.62       1      28 [.      49      75 ..      49     100 .. 0.78
   2 ?    0.4   0.0      0.23   5.9e+02      89     112 ..     117     140 ..      76     144 .. 0.80

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.00024
                EEEEEBTTTTHHHHHHHHHTS--S---S CS
   Dynamin_N  1 iavvGsqSsGKSSvlnaLlgedilprgp 28
                i  +G++ +GKS+v+ a+ g +  +r +
  KOO23890.1 49 IGTIGHVAHGKSTVVKAISGVH-TVRFK 75
                5679****************98.44444 PP

  == domain 2  score: 0.4 bits;  conditional E-value: 0.23
                 S-EEEEEEETTS-SEEEEE---B- CS
   Dynamin_N  89 kvillkilsllvkgltlvDlPGld 112
                 +v+  k +  lv ++++vD PG d
  KOO23890.1 117 VVTQGKWTYELVRHVSFVDCPGHD 140
                 46666777789999********65 PP

>> MMR_HSR1_Xtn  C-terminal region of MMR_HSR1 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.1   0.00011      0.27      58     100 ..     186     240 ..     178     245 .. 0.75

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00011
  MMR_HSR1_Xtn  58 clyvlNKiDlisleeldelare............pnsvviSaekelnldeLkeki 100
                    +++ NKiDl++++   + +++              +v+iSa+ ++n+d + e i
    KOO23890.1 186 IIILQNKIDLVKEAAALQQHEDikafvkgtvadsAPVVPISAQLRYNIDVVAEYI 240
                   68899*****76655444333335667778887668999***********99988 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (471 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       414  (0.0230911); expected 358.6 (0.02)
Passed bias filter:                      377  (0.0210274); expected 358.6 (0.02)
Passed Vit filter:                        52  (0.00290033); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.54u 0.26s 00:00:00.80 Elapsed: 00:00:00.42
# Mc/sec: 3373.94
//
Query:       KOO23891.1  [L=274]
Description: hypothetical protein Ctob_006071 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.6e-87  291.2   1.5    4.4e-87  290.9   1.5    1.1  1  Ribosomal_S3Ae  Ribosomal S3Ae family
  ------ inclusion threshold ------
      0.026   14.5   0.4       0.28   11.2   0.0    2.5  3  Phage_TAC_5     Phage XkdN-like tail assembly chaperone prote
      0.043   13.7   0.1        0.1   12.4   0.1    1.6  1  MRP-L27         Mitochondrial ribosomal protein L27
       0.15   12.0   0.5        1.5    8.7   0.1    2.1  2  Clat_adaptor_s  Clathrin adaptor complex small chain


Domain annotation for each model (and alignments):
>> Ribosomal_S3Ae  Ribosomal S3Ae family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  290.9   1.5   9.9e-91   4.4e-87       2     202 .]      23     228 ..      22     228 .. 0.98

  Alignments for each domain:
  == domain 1  score: 290.9 bits;  conditional E-value: 9.9e-91
                     S----S-TCCSEEEEEEEB-TTSSSSEEEEEEEE--BSSSESHHSHTT-EEEEESHHHHTCSHTSSSEEEEEEEEEEESSEEEEEEEEEEE-HHH CS
  Ribosomal_S3Ae   2 kkkkvvDkfkkKeWydvkaPslfgkreiGktlvnrtqgtkiaseklkgrvvevslaDLtndekeqafrklklkieevqgknaltnFkgmeltrDk 96 
                     k kkv D+f kKeWyd+k Ps f+ r++Gkt+v+r++g k as++lkgrv+e +laD+++de +qa+rk+++++eevqgk +ltnF+gm++t+Dk
      KOO23891.1  23 KGKKVLDPFLKKEWYDIKVPSNFSVRSCGKTPVTRSSGSKLASDSLKGRVFELNLADMNKDE-DQAYRKMYMQCEEVQGKGCLTNFYGMDFTTDK 116
                     7899*********************************************************8.889***************************** PP

                     HHHH--SSB-EEEEEEEEEESSSEEEEEEEEEEE-ST.T.....B---HHHHHHHHHHHHHHHHHHHHHS-HHHHHHHHTTTHHHHHHHHHHTTT CS
  Ribosomal_S3Ae  97 lrslvrkwsslIeaivdvktkDgyllrvfvvafTkkr.n.....sYakssqkkaIrkkmveilteeaseldlkelvkklipeslgkeiekeakkI 185
                     lrs+vrkw+slIea vdvkt+Dgy++r+f+++fT k  n     +Ya + q+k Irkkm+ei+t+ea++++l+elv+k+ipe +gkei+k++ + 
      KOO23891.1 117 LRSMVRKWQSLIEASVDVKTMDGYVMRLFCIGFTMKCkNqlkktCYAGAGQQKIIRKKMREIMTREATSCELQELVNKFIPEVIGKEIQKACFST 211
                     *************************************769******************************************************* PP

                     S-EEEEEEEEEEEEE-S CS
  Ribosomal_S3Ae 186 yplrnveirKvkvlkkP 202
                     ypl+nv+irKvk+lkkP
      KOO23891.1 212 YPLQNVYIRKVKMLKKP 228
                     ***************99 PP

>> Phage_TAC_5  Phage XkdN-like tail assembly chaperone protein, TAC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   6.3e-05      0.28      17      61 ..      62     108 ..      51     122 .. 0.78
   2 ?    0.0   0.1      0.18   7.9e+02      23      53 ..     134     164 ..     120     187 .. 0.75
   3 ?   -1.5   0.0      0.51   2.3e+03      43      55 ..     201     213 ..     181     236 .. 0.59

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 6.3e-05
                  E---TT-B-TTS-B--EEE----HHHHHHHHHHTB---------.....- CS
  Phage_TAC_5  17 vvaskrlkdekgkpvpfeikaiteeeieeirkectkkvkvkGkk.....v 61 
                  + as +l   kg ++++ +  ++++e+++ rk +++ ++v+Gk      +
   KOO23891.1  62 KLASDSL---KGRVFELNLADMNKDEDQAYRKMYMQCEEVQGKGcltnfY 108
                  5566667...69******************************98655554 PP

  == domain 2  score: 0.0 bits;  conditional E-value: 0.18
                  -B-TTS-B--EEE----HHHHHHHHHHTB-- CS
  Phage_TAC_5  23 lkdekgkpvpfeikaiteeeieeirkectkk 53 
                  +k+ +g ++ + + ++t++  ++++k+c   
   KOO23891.1 134 VKTMDGYVMRLFCIGFTMKCKNQLKKTCYAG 164
                  4445788999999999999999999999865 PP

  == domain 3  score: -1.5 bits;  conditional E-value: 0.51
                  HHHHHHHTB---- CS
  Phage_TAC_5  43 ieeirkectkkvk 55 
                   +ei+k+c  + +
   KOO23891.1 201 GKEIQKACFSTYP 213
                  5666666665543 PP

>> MRP-L27  Mitochondrial ribosomal protein L27
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.1   2.3e-05       0.1      34      73 ..     166     205 ..     157     227 .. 0.87

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 2.3e-05
                 TEEEE-TTTS-EE-----TT----SEE-TTS--------- CS
     MRP-L27  34 gkyveirekvrelvvPdlegfkLKpyVsykapevkqselt 73 
                 g+ ++ir+k+re+++ + + ++L  +V++ +pev+ +e+ 
  KOO23891.1 166 GQQKIIRKKMREIMTREATSCELQELVNKFIPEVIGKEIQ 205
                 67789*****************************988764 PP

>> Clat_adaptor_s  Clathrin adaptor complex small chain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.3   0.0     0.065   2.9e+02       6      40 ..      94     129 ..      88     138 .. 0.83
   2 ?    8.7   0.1   0.00034       1.5       8      54 ..     149     193 ..     141     210 .. 0.83

  Alignments for each domain:
  == domain 1  score: 1.3 bits;  conditional E-value: 0.065
                     EEE-TTS-EEEEEES.SSS-CHHHHHHHHHHHHHHH CS
  Clat_adaptor_s   6 lilnkkgkvrlakfy.tavddkkkqklieevyelvs 40 
                      + + +gk  l+ fy + +  +k + ++++  +l+ 
      KOO23891.1  94 QCEEVQGKGCLTNFYgMDFTTDKLRSMVRKWQSLIE 129
                     566779999******999999999999999887775 PP

  == domain 2  score: 8.7 bits;  conditional E-value: 0.00034
                     E-TTS-EEEEEESSSS-CHHHHHHHHHHHHHHHTT-SSS-SEEEETT CS
  Clat_adaptor_s   8 lnkkgkvrlakfytavddkkkqklieevyelvsaRdsklsniveled 54 
                     +  k+k +l+k  t +    +qk+i++ ++ + +R++  +++ el +
      KOO23891.1 149 FTMKCKNQLKK--TCYAGAGQQKIIRKKMREIMTREATSCELQELVN 193
                     67788999998..66778899*********************99987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (274 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       563  (0.0314016); expected 358.6 (0.02)
Passed bias filter:                      365  (0.0203581); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.44u 0.23s 00:00:00.67 Elapsed: 00:00:00.39
# Mc/sec: 2133.60
//
Query:       KOO23892.1  [L=460]
Description: signal recognition particle [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.1e-21   77.5   0.0    1.9e-21   76.8   0.0    1.3  1  SRP19            SRP19 protein
    8.6e-05   23.1   0.0       0.13   12.9   0.0    2.5  2  Asp_protease_2   Aspartyl protease
  ------ inclusion threshold ------
      0.042   13.3   0.0       0.13   11.7   0.0    1.6  2  Asp              Eukaryotic aspartyl protease
      0.045   14.0   0.0       0.23   11.7   0.0    2.3  3  FLgD_tudor       FlgD Tudor-like domain
      0.079   13.5   0.0        4.7    7.8   0.0    2.4  2  gag-asp_proteas  gag-polyprotein putative aspartyl protease


Domain annotation for each model (and alignments):
>> SRP19  SRP19 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   76.8   0.0   5.3e-25   1.9e-21       1      90 [.      25     116 ..      25     119 .. 0.93

  Alignments for each domain:
  == domain 1  score: 76.8 bits;  conditional E-value: 5.3e-25
                 EEECCCCBTTS-CCCT--S-CCCSBSS--HHHHHHHHHHCTSCEEEEEEECTTSSTTCCEEEEEC-............SS-CHHHHHHHHHH CS
       SRP19   1 viYPvYldskktrkeGRrvpkelavenPtaqeiaealkalglevvvepeksyPrdwanpGrVrvklk..edgkevnekiknkkellkkiael 90 
                 +++PvYld+kkt++eGR++p e +ve P++ e++++l +lg+e+ +e++k+yPrd  + Gr rv lk   +g +  e i+++++llk++ ++
  KOO23892.1  25 IVWPVYLDKKKTVAEGRKIPIEWCVEYPQMGELRDVLDHLGFEHAYEESKCYPRDLTQYGRFRVLLKdpMTGAPKVEGITTRRQLLKAMGAY 116
                 69****************************************************************856677788888*********98876 PP

>> Asp_protease_2  Aspartyl protease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.6   0.0    0.0016       5.8       2      23 ..     119     140 ..     118     144 .. 0.87
   2 !   12.9   0.0   3.6e-05      0.13       3      53 ..     302     354 ..     300     384 .. 0.74

  Alignments for each domain:
  == domain 1  score: 7.6 bits;  conditional E-value: 0.0016
  Asp_protease_2   2 pvtinGkpvrfllDTGasttli 23 
                     +++++G+++r++ DTG+  +l+
      KOO23892.1 119 EFRVDGERFRAVADTGSPFLLV 140
                     689**************98765 PP

  == domain 2  score: 12.9 bits;  conditional E-value: 3.6e-05
  Asp_protease_2   3 vtinG......kpvrfllDTGasttlispelaeklglkvreseltvrvsgaggevka 53 
                     +++nG      +p+ +++DTG s++++s++l ++ +l+  + +    ++++  e  +
      KOO23892.1 302 LRVNGqeikisRPCVAIIDTGTSGLVVSDTLYDSDELPMPGAA----MRTVEVELLS 354
                     57888888887799*****************988888776643....3333333333 PP

>> Asp  Eukaryotic aspartyl protease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.0      0.61   2.2e+03      14      30 ..     126     142 ..     119     148 .. 0.72
   2 ?   11.7   0.0   3.6e-05      0.13     178     217 ..     294     333 ..     286     344 .. 0.90

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 0.61
                 EEEEEEETT--SEEEEB CS
                 xxxxxxxxxxxxxxxxx RF
         Asp  14 kftvifDTGSsdlWVps 30 
                 +f+ + DTGS+ l V +
  KOO23892.1 126 RFRAVADTGSPFLLVLA 142
                 56677788887776665 PP

  == domain 2  score: 11.7 bits;  conditional E-value: 3.6e-05
                 STEEEEEEEEETTEEEEEEEEEEEEEETTCSSEEEEHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
         Asp 178 ywqielesvtvggktvlcssgcqailDtGTsllalptsiv 217
                  +++ ++++ v+g+++  s+ c ai+DtGTs l+++++  
  KOO23892.1 294 QYAAAVHRLRVNGQEIKISRPCVAIIDTGTSGLVVSDTLY 333
                 5788999************************999988765 PP

>> FLgD_tudor  FlgD Tudor-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   6.3e-05      0.23      17      47 ..     190     236 ..      49     246 .. 0.81
   2 ?   -1.2   0.0      0.69   2.5e+03      37      52 ..     276     292 ..     274     294 .. 0.83
   3 ?   -3.2   0.0         3   1.1e+04       2       7 ..     360     365 ..     346     366 .. 0.58

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 6.3e-05
                 E...............TEEEEE-EEEEEEEEEEEE..ETTEEEEEET CS
                 x...............xxxxxxxxxxxxxxxxxxx.xxxxxxxxxxx RF
  FLgD_tudor  17 p...............GtsvaattlvygtVdsVsl.stggglmLnLg 47 
                 +               Gt    ++ ++g V sV   +++++l+L L+
  KOO23892.1 190 DrrngarsgawtvpreGTDLLFEPINFGVVKSVERtGGSSALYLGLA 236
                 26666666666666778889999************888888888887 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 0.69
                 .ETTEEEEEET.TEE.E CS
                 xxxxxxxxxxx.xxxxx RF
  FLgD_tudor  37 stggglmLnLg.lggtv 52 
                 +++g ++L+L  lg  v
  KOO23892.1 276 KGDGIPLLDLRpLGAPV 292
                 4899******9888876 PP

  == domain 3  score: -3.2 bits;  conditional E-value: 3
                 HHHHTT CS
                 xxxxxx RF
  FLgD_tudor   2 QalqAa 7  
                 Q+lqAa
  KOO23892.1 360 QTLQAA 365
                 555554 PP

>> gag-asp_proteas  gag-polyprotein putative aspartyl protease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.2   0.0     0.037   1.3e+02       2      20 ..     119     137 ..     118     143 .. 0.84
   2 ?    7.8   0.0    0.0013       4.7       8      36 ..     313     341 ..     301     367 .. 0.70

  Alignments for each domain:
  == domain 1  score: 3.2 bits;  conditional E-value: 0.037
                      EEEETTEEEEEEEETT-SS CS
  gag-asp_proteas   2 kvkingkpvkflvDTGAss 20 
                      + +++g++++++ DTG   
       KOO23892.1 119 EFRVDGERFRAVADTGSPF 137
                      5789************865 PP

  == domain 2  score: 7.8 bits;  conditional E-value: 0.0013
                      EEEEEEEETT-SS-EEEHHHHHHTTGGGG CS
  gag-asp_proteas   8 kpvkflvDTGAsstiiseelaerlglsrk 36 
                      +p+ +++DTG s  ++s++l +  +l+  
       KOO23892.1 313 RPCVAIIDTGTSGLVVSDTLYDSDELPMP 341
                      57889*************99886666544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (460 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       214  (0.011936); expected 358.6 (0.02)
Passed bias filter:                      201  (0.0112109); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.48u 0.23s 00:00:00.71 Elapsed: 00:00:00.41
# Mc/sec: 3375.71
//
Query:       KOO23893.1  [L=409]
Description: flagella associated protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (409 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       290  (0.0161749); expected 358.6 (0.02)
Passed bias filter:                      281  (0.0156729); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.46u 0.26s 00:00:00.72 Elapsed: 00:00:00.42
# Mc/sec: 2954.76
//
Query:       KOO23894.1  [L=385]
Description: mitochondrial tRNA-specific 2-thiouridylase 1 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.3e-99  333.4   0.0    1.4e-99  333.2   0.0    1.0  1  tRNA_Me_trans  tRNA methyl transferase


Domain annotation for each model (and alignments):
>> tRNA_Me_trans  tRNA methyl transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  333.2   0.0  8.1e-104   1.4e-99      32     356 .]       1     352 [.       1     352 [. 0.95

  Alignments for each domain:
  == domain 1  score: 333.2 bits;  conditional E-value: 8.1e-104
  tRNA_Me_trans  32 lklweeedeegkeccaeedlkdaervaeklgiplevvdfekeykekvfeefleeyeeGrTPnPdvlCNkeiKfgallekakeelgadalatGHYar 127
                    + +we ++eeg+e c+e+d++da++v+e+lgi +++++f++ey+++vfe++l+ y++G TPnPdv+CN+ iKf+ ++ +a + lgad +atGHYar
     KOO23894.1   1 MSNWEVAEEEGQEACSERDARDARKVCEQLGIGFHRISFVREYWNDVFEPLLQGYQAGGTPNPDVMCNRFIKFDRFFAHARA-LGADRVATGHYAR 95 
                    899***9**************************************************************************9.************* PP

  tRNA_Me_trans 128 vslee...................eknevellrakdkkkDQsyfLsqlskealekllfPlgeltKeevrkiAkeaglavaekkdSqgiCfigkrkf 204
                    + + +                   +   ++ll ++d +kDQsyfLs++++eal+   fP+g+l+K+evr+ A++agl +a+k+dS+giCfigkr+f
     KOO23894.1  96 LAHGSvasdpssasstgnsagqerSPVPTRLLMGVDAAKDQSYFLSKVRQEALQFCDFPIGHLHKSEVRARAAAAGLLTATKPDSMGICFIGKRNF 191
                    ***999*************99876556789****************************************************************** PP

  tRNA_Me_trans 205 kdflkkyleekeGkiieietgevlGeheGllsyTiGqrkGlkiagaeeplyVvekdakkntvlvgkgedeealaskklrvk..elnwlae....el 294
                     dfl+ yl++ +G+++ +++g+ +Geh+G+  yT Gqr   +++g + ++yVvekda +n v +++g+d++al+ ++l ++  +++w++     el
     KOO23894.1 192 ADFLEGYLPQFPGRFVCADSGRDVGEHRGYAVYTPGQR--ARVSGLQTRWYVVEKDAATNVVKICEGSDHPALFARSLWTHpaSASWISGapppEL 285
                    **************************************..9*************************************997325689998888888 PP

  tRNA_Me_trans 295 kekealelevkvrhkqelvkakvelked.....etvevkldekvravtpGQaavlYkgdevLGggii 356
                      ++ ++++++vrh  el++++ve++++     +++++++de+vr++++ Qa++lY+gd++LGg++i
     KOO23894.1 286 VPGRPFRCHARVRHPGELHPCTVEIETSpplraGAMRLSFDEPVRGLAEMQAIALYDGDICLGGATI 352
                    9999******************99987533434789*****************************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (385 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       296  (0.0165096); expected 358.6 (0.02)
Passed bias filter:                      276  (0.0153941); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.24s 00:00:00.69 Elapsed: 00:00:00.40
# Mc/sec: 2910.40
//
Query:       KOO23895.1  [L=475]
Description: bifunctional purine biosynthetic protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    9.5e-73  244.1   0.0    1.3e-72  243.6   0.0    1.2  1  GARS_A           Phosphoribosylglycinamide synthetase, ATP-gr
      1e-28   99.9   0.3    3.1e-28   98.4   0.3    1.8  1  GARS_N           Phosphoribosylglycinamide synthetase, N doma
    4.5e-25   87.8   4.8    5.7e-25   87.4   3.3    2.0  2  GARS_C           Phosphoribosylglycinamide synthetase, C doma
    1.2e-06   28.2   0.0    2.3e-06   27.3   0.0    1.3  1  CPSase_L_D2      Carbamoyl-phosphate synthase L chain, ATP bi
    1.3e-05   24.8   0.0    2.6e-05   23.9   0.0    1.5  1  ATP-grasp        ATP-grasp domain
    3.2e-05   24.1   0.0      6e-05   23.2   0.0    1.4  1  ATP-grasp_3      ATP-grasp domain
      0.004   16.8   0.0     0.0081   15.8   0.0    1.5  1  ATP-grasp_4      ATP-grasp domain
  ------ inclusion threshold ------
       0.02   14.4   0.0      0.047   13.1   0.0    1.6  1  ATP-grasp_5      ATP-grasp domain
      0.021   14.4   0.2       0.16   11.5   0.0    2.2  2  ATP-grasp_2      ATP-grasp domain
       0.05   13.3   0.0        0.1   12.3   0.0    1.5  1  Dpy-30           Dpy-30 motif
      0.075   12.3   0.0        1.1    8.4   0.0    2.3  2  ATPgrasp_ST      Sugar-transfer associated ATP-grasp
       0.14   11.7   0.0       0.23   11.0   0.0    1.4  1  Dala_Dala_lig_C  D-ala D-ala ligase C-terminus


Domain annotation for each model (and alignments):
>> GARS_A  Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  243.6   0.0     9e-76   1.3e-72       2     194 .]     153     343 ..     152     343 .. 0.99

  Alignments for each domain:
  == domain 1  score: 243.6 bits;  conditional E-value: 9e-76
                 BHHHHHHHHHHTT--B--EEEESSHHHHHHHHHHHSSSEEEEEESC-GGGT-EEEESSHHHHHHHHHHHCTS-TTCCCCSSEEEEE---SEEEEEEEEE CS
      GARS_A   2 sKsfakdllkkagiptaeyeaftdpeeakeyieeatakalVvKadglaagKgvivakseeealkavkeilekkkfGeagekvviEelleGeEvsllalv 100
                 sK+++k++++++g+pta++ +ft+ ++ak+ +e+ + ++ VvK +gla+gKgv +++++ee+++a+k+++++k fG+ag++ v+Ee l G E s+la++
  KOO23895.1 153 SKAWMKEFFTRHGLPTARHVTFTEFAAAKAHVESIDYPV-VVKCSGLAGGKGVLMPTTKEETIDALKQVMVDKVFGSAGDQCVVEECLYGPECSVLAFC 250
                 9**************************************.*********************************************************** PP

                 CTTEEEE---BEEEEEEECCCEEEEECECEEEES-TTS-HHHHHHHHHHTHHHHHHHHHCTT---EEEEEEEEEEETTEEEEEEEESS--TTCH CS
      GARS_A 101 dgktvkplplaqdhkrvlegDkgpnTGGmGayspapvvteellekikeeileptveglkkegipfkGvLyaglmlvedgpkvlefnvRfgDpet 194
                 dg+t + +p aqdhkr+l+gD+g+nTGGmGay+++p++t+el+e++   i+++tv +l++eg +++GvL+aglml++dgpk+le+n+R gDpet
  KOO23895.1 251 DGTTAVCMPGAQDHKRALDGDQGLNTGGMGAYARCPCLTKELEEEAAA-IIQRTVTALASEGRKYVGVLFAGLMLTKDGPKLLEYNCRMGDPET 343
                 ********************************************9998.********************************************8 PP

>> GARS_N  Phosphoribosylglycinamide synthetase, N domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   98.4   0.3     2e-31   3.1e-28       2      90 .]      49     151 ..      48     151 .. 0.95

  Alignments for each domain:
  == domain 1  score: 98.4 bits;  conditional E-value: 2e-31
                 EEEEEESSHHHHHHHHHHTTSTTESEEEEEE--CGG...............TTHHHHHHHHHHCTESEEEE-SHHHHHTTHHHHHHHHHT-EEES--CC CS
      GARS_N   2 kvLvvGsGGRehalawklaqspkvekvyvapgNagt...............edlealvefakeekidlvvvGpeapLvaGvadaleeekgikvfGpske 85 
                 +v+vvGsGGRe a   klaqs+ v+kv+vapgN+gt               +d+  lv+ ak++++ lv +Gpe pLvaG+adal++e +i++fGp+k 
  KOO23895.1  49 TVMVVGSGGREMAQSLKLAQSDVVDKVLVAPGNGGTsschpkisnladvkdSDIPGLVAAAKQHGVALVAIGPEGPLVAGIADALAAE-NIPCFGPTKM 146
                 69************************************999999998887777788*****************************776.********** PP

                 CCHHH CS
      GARS_N  86 aAqlE 90 
                 aA+lE
  KOO23895.1 147 AAELE 151
                 ****9 PP

>> GARS_C  Phosphoribosylglycinamide synthetase, C domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.0       4.5   6.7e+03      34      43 ..      45      60 ..      13      69 .. 0.62
   2 !   87.4   3.3   3.8e-28   5.7e-25       1      79 [.     378     471 ..     378     472 .. 0.95

  Alignments for each domain:
  == domain 1  score: -2.5 bits;  conditional E-value: 4.5
                E......EEE-SSEEE CS
      GARS_C 34 k......lvtsGGRvl 43
                k      +v sGGR +
  KOO23895.1 45 KsmvtvmVVGSGGREM 60
                1334444677888855 PP

  == domain 2  score: 87.4 bits;  conditional E-value: 3.8e-28
                 EEEEEEEETTTTSS--ST-EEBS.......TTEEEEESSEE.....EEE-SSEEEEEEEEESSHHHHHHHHHHHHTTCB-...TTEE--STTTH CS
      GARS_C   1 avgvvlaskGYPgsyekgkeitg.......egvkvfhagtk.....lvtsGGRvlavvavgetleeArakayeavkkikf...eglfyRkDIGa 79 
                 a++vv+a++GYPg+y+kg++i g       egv+v+hagtk     +v++GGRvlav++vg++l++A  kay+av++ikf   eg+++R+DI+a
  KOO23895.1 378 AATVVMAAAGYPGTYAKGAPILGlevagamEGVTVYHAGTKvaggdIVCNGGRVLAVTGVGANLKDAVGKAYAAVHAIKFdckEGAMFRTDIAA 471
                 689******************8899*****9999*******999999*********************************77779*******97 PP

>> CPSase_L_D2  Carbamoyl-phosphate synthase L chain, ATP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.3   0.0   1.5e-09   2.3e-06      11      92 ..     163     242 ..     153     259 .. 0.83

  Alignments for each domain:
  == domain 1  score: 27.3 bits;  conditional E-value: 1.5e-09
                  HTT-BBSSEECSSBSSHHHHHHHHHHH-SSEEEEETTCCTTTTEEEESSHHHHHHHHHHHHHHHHHHHSTS-EEEEE--SSS CS
  CPSase_L_D2  11 kinvpvvpssaapvetleealaiakeigyPviikaafglGGkGmrvarneeelaelvkkalaeakaafgnkqvlvekslkgp 92 
                  + + p+++ ++   ++   a a +++i yPv++k +   GGkG  + +++ee+++++k+ +       + +q+ ve+ l gp
   KOO23895.1 163 RHGLPTARHVTF--TEFAAAKAHVESIDYPVVVKCSGLAGGKGVLMPTTKEETIDALKQVMVDKVFGSAGDQCVVEECLYGP 242
                  555666666555..788899999************************************999986555679******99887 PP

>> ATP-grasp  ATP-grasp domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.9   0.0   1.7e-08   2.6e-05       2      95 ..     162     259 ..     161     332 .. 0.79

  Alignments for each domain:
  == domain 1  score: 23.9 bits;  conditional E-value: 1.7e-08
                 HTTT--B-EEEEECCHHHHHHHHHHH-SCEEEEESSS-CTTTTEEEECTCCGHHCHHHHC........GTTCEEEEE----SEEEEEEEEEETTC-EEE CS
   ATP-grasp   2 eklglpvprflaveskeeleeaaeelglpvvvKarrlgydGkGqsvvrseedleqaleal........keekvivEefvpfekElsvlvvrsaeGetaf 92 
                 +++glp++r+++ ++ +++++ +e++++pvvvK + +   GkG  +   +e+  +al+++        ++ +++vEe   +  E svl+    +G+ta+
  KOO23895.1 162 TRHGLPTARHVTFTEFAAAKAHVESIDYPVVVK-CSGLAGGKGVLMPTTKEETIDALKQVmvdkvfgsAGDQCVVEECL-YGPECSVLAF--CDGTTAV 256
                 579******************************.888889******999999999999888999999889999999976.8889998875..4565555 PP

                 --E CS
   ATP-grasp  93 ypv 95 
                 + +
  KOO23895.1 257 CMP 259
                 544 PP

>> ATP-grasp_3  ATP-grasp domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.2   0.0     4e-08     6e-05       7     158 ..     157     338 ..     152     341 .. 0.72

  Alignments for each domain:
  == domain 1  score: 23.2 bits;  conditional E-value: 4e-08
                  HHHHHTTT.S---.........-EESS--.......SSSEEEEESS-------B--SS--TTE...................EEEE---SEEEEEEEE CS
  ATP-grasp_3   7 tykkLkeagvkvP.....tkleaeeleee.......ekklvvKprdGaggesvrvveekeeaeaaieeve............lvqefieGkplSvsll 80 
                  + +++ ++g+++      t     e++ +       ++++vvK +  agg++v++   kee+  a+++v             +v e + G ++Sv + 
   KOO23895.1 157 MKEFFTRHGLPTArhvtfT-----EFAAAkahvesiDYPVVVKCSGLAGGKGVLMPTTKEETIDALKQVMvdkvfgsagdqcVVEECLYGPECSVLAF 249
                  5566666766666444332.....3333233333559**********************99999999988999************************* PP

                  E.SSSEEEEEEEEEEEET.......TEEEEEEE.....S----H.HHHHHHHHHHHHTTST.T--EEEEE...EEEESS.SEEEEEEESS- CS
  ATP-grasp_3  81 sdgekvlvlavnrqliekaeke...fvyaGnvt.....pietel.keevvelaeevvekle.glaGyvGv...DlvlkdeepyviEvNPRl 158
                  +dg +++++   + +     ++      +G++      p  t++ +ee+ ++++++v +l  + + yvGv    l+l++++p ++E N R+
   KOO23895.1 250 CDGTTAVCMPGAQDHKRA--LDgdqGLNTGGMGayarcPCLTKElEEEAAAIIQRTVTALAsEGRKYVGVlfaGLMLTKDGPKLLEYNCRM 338
                  ***877777655544432..223564555555411111444444499999999999999988788899984445679999**********8 PP

>> ATP-grasp_4  ATP-grasp domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.0   5.4e-06    0.0081       1      79 [.     187     255 ..     187     271 .. 0.84

  Alignments for each domain:
  == domain 1  score: 15.8 bits;  conditional E-value: 5.4e-06
  ATP-grasp_4   1 islPvviKPsvgffSlGVykinneeewkaavaaieeeleqakeeykeevveeesflvEeyieGeEfavdayfdeeGepv 79 
                  i++Pvv+K s  ++  GV +  ++ee  +a++++  +     + +      +++ +vEe++ G E +v a+ d  G++ 
   KOO23895.1 187 IDYPVVVKCSGLAGGKGVLMPTTKEETIDALKQVMVD-----KVFG---SAGDQCVVEECLYGPECSVLAFCD--GTTA 255
                  579***********************99999999855.....3333...358999***************995..5554 PP

>> ATP-grasp_5  ATP-grasp domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.0   3.1e-05     0.047      15      54 ..     157     196 ..     148     202 .. 0.92

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 3.1e-05
  ATP-grasp_5  15 akelleaygipvvetrlassaeeaveaaeeigypvvlKiv 54 
                   ke ++  g+p++++   ++ ++a + +e+i+ypvv+K+ 
   KOO23895.1 157 MKEFFTRHGLPTARHVTFTEFAAAKAHVESIDYPVVVKCS 196
                  689999********************************96 PP

>> ATP-grasp_2  ATP-grasp domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.1   0.0      0.38   5.7e+02     112     163 ..      40      92 ..      37     111 .. 0.70
   2 ?   11.5   0.0    0.0001      0.16       8      81 ..     158     226 ..     154     239 .. 0.84

  Alignments for each domain:
  == domain 1  score: -0.1 bits;  conditional E-value: 0.38
                  EEETTTTEEEEEEESSTTS-HHH.HHHH-GGGEEEEEEBTTTB--HHHHHHHH CS
  ATP-grasp_2 112 vlDraskkvvviaSseGGvdiEe.vaakkPekiikvaidpakglkeeqareia 163
                  ++ r++++v+v++  +GG ++ + +   + + + kv + p +g +++   +i 
   KOO23895.1  40 LIKRQKSMVTVMVVGSGGREMAQsLKLAQSDVVDKVLVAPGNGGTSSCHPKIS 92 
                  78899999999999999998864144455666667777776666666655555 PP

  == domain 2  score: 11.5 bits;  conditional E-value: 0.0001
                  HHHHHCTT----SEEEESSHHHHHHHHHHHTSSSEEEEE--SSSTCCCTTCEEEESSHHHHHHHHHCCTTSEEE CS
  ATP-grasp_2   8 keilakygvkvpegevaesaeeaeeaakklgekelvvKaQvlaGGRGKagGvklvkskeeakeaakellgkelv 81 
                  ke + ++g+++++    ++   a++ +++++  + vvK+  laGG+G    v + ++kee  +a k+++  ++ 
   KOO23895.1 158 KEFFTRHGLPTARHVTFTEFAAAKAHVESIDYPV-VVKCSGLAGGKG----VLMPTTKEETIDALKQVMVDKVF 226
                  899***********99999999********9999.*********985....78888888887777777766655 PP

>> Dpy-30  Dpy-30 motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0     7e-05       0.1       5      40 ..       7      43 ..       5      45 .. 0.82

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 7e-05
                HHH.HHTHHHHHHHHHHHHHH--SSHHHHHHHHHHHH CS
      Dpy-30  5 YLn.ktvaPiLlqGLtelAkeRPeDPieyLAeYLlkn 40
                YL+  +v +  +++ t + k+RP DPi  ++e L+k 
  KOO23895.1  7 YLEaHKVPDAITAAVTKVLKTRPADPITAIGELLIKR 43
                6641467788999***************999999986 PP

>> ATPgrasp_ST  Sugar-transfer associated ATP-grasp
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.4   0.0   0.00075       1.1      20      85 ..     152     213 ..     141     238 .. 0.82
   2 ?    1.0   0.0      0.13     2e+02     240     267 ..     313     339 ..     301     347 .. 0.75

  Alignments for each domain:
  == domain 1  score: 8.4 bits;  conditional E-value: 0.00075
  ATPgrasp_ST  20 ddKlkfkelalraglkvpkllgvikeqaeiseleafvkeleegvviKpakgsgGkGilviteredq 85 
                  ++K  +ke+  r+gl++ +      +  e+++++a v++++  vv+K     gGkG+l+ t +e++
   KOO23895.1 152 NSKAWMKEFFTRHGLPTAR----HVTFTEFAAAKAHVESIDYPVVVKCSGLAGGKGVLMPTTKEET 213
                  56889999999***99999....33347888899999999777****************9886554 PP

  == domain 2  score: 1.0 bits;  conditional E-value: 0.13
  ATPgrasp_ST 240 pglgylGwDivldeekgplllElNarpg 267
                   ++g+l   + l++++ p llE N r g
   KOO23895.1 313 KYVGVLFAGLMLTKDG-PKLLEYNCRMG 339
                  3666666778899999.*******9976 PP

>> Dala_Dala_lig_C  D-ala D-ala ligase C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   0.00015      0.23       2     101 ..     161     259 ..     160     336 .. 0.76

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00015
                      HHHTT--B--EEEEETTHHCH-H-HHHHHHHHHC-SSEEEEESSSSTTTTEEEESSGGGHHHHHHHHH......TT-SCEEEEE--ESEEEEEE CS
  Dala_Dala_lig_C   2 lkaaGlpvvpyvvlekeeakeekkellekveeelgypvfVKpareGSSvGvskveseeelkeaieeaf......kydekvlvEeaiegreieva 89 
                      +++ Glp++ +v++++ +a +++       +e++ ypv+VK + +    Gv   +++ee  +a+++ +      +   + +vEe + g e  v 
       KOO23895.1 161 FTRHGLPTARHVTFTEFAAAKAH-------VESIDYPVVVKCSGLAGGKGVLMPTTKEETIDALKQVMvdkvfgSAGDQCVVEECLYGPECSVL 247
                      56789999999999888777777.......999************9999**9999999999998876522222245578889999998875554 PP

                      EEETSSCEEEEE CS
  Dala_Dala_lig_C  90 vlgneklevsev 101
                         ++++ v   
       KOO23895.1 248 AFCDGTTAVCMP 259
                      444666655555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (475 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       457  (0.0254894); expected 358.6 (0.02)
Passed bias filter:                      365  (0.0203581); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.51u 0.25s 00:00:00.76 Elapsed: 00:00:00.41
# Mc/sec: 3502.14
//
Query:       KOO23896.1  [L=352]
Description: hypothetical protein Ctob_010322 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    2.3e-08   34.2   0.0    6.1e-08   32.9   0.0    1.7  2  ATP-grasp_3  ATP-grasp domain
     0.0053   16.3   0.0       0.01   15.3   0.0    1.5  1  PGM1_C       PGM1 C-terminal domain


Domain annotation for each model (and alignments):
>> ATP-grasp_3  ATP-grasp domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.9   0.0   6.8e-12   6.1e-08      26     155 ..     110     243 ..      81     250 .. 0.68
   2 ?   -2.8   0.0      0.63   5.7e+03      67      87 ..     311     331 ..     304     340 .. 0.74

  Alignments for each domain:
  == domain 1  score: 32.9 bits;  conditional E-value: 6.8e-12
                  ESS--SSSEEEEESS-------B--SS--TTE.......EEEE---SEEEEEE.EEE.SSSEE.EEEEEEEEEET........TEEEEEEES----H. CS
  ATP-grasp_3  26 eleeeekklvvKprdGaggesvrvveekeeaeaaieevelvqefieGkplSvs.llsdgekvl.vlavnrqliekaeke....fvyaGnvtpietel. 116
                  + +  + ++v+Kp dG g+ + ++   + ++ a ++     +++i+G++++++ +++ +   + ++ ++        ++     +  Gn +p+     
   KOO23896.1 110 KSQDPPVRVVLKPTDGLGCAGLVLDATE-ADLAPVN----TKAWIKGSEYTIEeMIGAKGGPSpTVYMCGTTPIAVADQimcgTSNHGNFVPSAAPSa 202
                  34445899***********988777666.5555555....589*********72444444433134444333323233345568999*****998876 PP

                  HHHHHHHHHHHHTTSTT--EEEEEEEEESS...SEEEEEEE CS
  ATP-grasp_3 117 keevvelaeevvekleglaGyvGvDlvlkd..eepyviEvN 155
                   ++++++a  ++ +  +l+G  G D+v+ +  ++p+v++ N
   KOO23896.1 203 MQQAMAEAGVAIGRYLDLKGQWGLDFVIDEvtQDPVVVDLN 243
                  5666666666666655*************9999*******9 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 0.63
                  EE---SEEEEEEEEE.SSSEE CS
  ATP-grasp_3  67 qefieGkplSvsllsdgekvl 87 
                  + +i G++ ++ ++s + +  
   KOO23896.1 311 SYYIAGQSSTIVCVSWTGRED 331
                  569999999999998665555 PP

>> PGM1_C  PGM1 C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.0   1.2e-06      0.01       3      23 ..     290     310 ..     288     317 .. 0.92

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 1.2e-06
      PGM1_C   3 larLeeeGLaYdpetreGVVl 23 
                 +++L+++GL++ p++ eGVV 
  KOO23896.1 290 VKLLRDAGLLWLPGRTEGVVP 310
                 799*****************7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (352 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       240  (0.0133861); expected 358.6 (0.02)
Passed bias filter:                      235  (0.0131073); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.42u 0.25s 00:00:00.67 Elapsed: 00:00:00.40
# Mc/sec: 2632.97
//
Query:       KOO23897.1  [L=419]
Description: hypothetical protein Ctob_010323, partial [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (419 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       515  (0.0287244); expected 358.6 (0.02)
Passed bias filter:                      435  (0.0242624); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.49u 0.28s 00:00:00.77 Elapsed: 00:00:00.43
# Mc/sec: 2936.49
//
Query:       KOO23898.1  [L=481]
Description: hypothetical protein Ctob_010320 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.7e-07   30.6   6.6    3.7e-07   30.6   6.6    3.9  3  ShK            ShK domain-like
  ------ inclusion threshold ------
      0.072   12.3   0.0       0.12   11.5   0.0    1.3  1  Phytochelatin  Phytochelatin synthase


Domain annotation for each model (and alignments):
>> ShK  ShK domain-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   1.1       1.2   1.1e+04      11      19 ..     107     114 ..     102     125 .. 0.61
   2 !    5.6   8.8    0.0026        23       5      38 .]     301     327 ..     290     327 .. 0.79
   3 !   30.6   6.6   4.1e-11   3.7e-07       1      38 []     357     392 ..     357     392 .. 0.97

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 1.2
         ShK  11 swaalgfCt 19 
                 sw++l+ C+
  KOO23898.1 107 SWTRLN-CS 114
                 566665.43 PP

  == domain 2  score: 5.6 bits;  conditional E-value: 0.0026
         ShK   5 pssdCaswaalgfCtnptyrdlmkeqCpktCgfC 38 
                  ++ Ca++a++ fC+         + Cp  Cg+C
  KOO23898.1 301 MMGRCAMRASASFCSTG-------SLCPVACGRC 327
                 4489**********755.......6********* PP

  == domain 3  score: 30.6 bits;  conditional E-value: 4.1e-11
         ShK   1 tCtDpssdCaswaalgfCtnptyrdlmkeqCpktCgfC 38 
                 +C+D +s+C +wa  g+C ++    +m++ C ++C +C
  KOO23898.1 357 GCVDDHSSCEVWAETGECDRAV--RFMNKSCKASCHVC 392
                 5******************999..************** PP

>> Phytochelatin  Phytochelatin synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   1.4e-05      0.12      50     107 ..     416     472 ..     410     480 .. 0.92

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 1.4e-05
                    HHHHHHHHHHHHHT-----TTTTT-----TTTCCGSHS-HHHHHHH---HHHHHHHHH CS
  Phytochelatin  50 CGlaslvmvLnaLevdpkrkwkgpwrwfteellldcciklekvkkeGitleelaelak 107
                    CG a+l   L a +v+ +++ +   r+  e+   +c+ +  +v+++G+t+++l ++ +
     KOO23898.1 416 CGHAALQKYLAACRVQLEDQANVDLRYRFEHRA-QCNAQGRTVRNTGYTIRQLMNIYR 472
                    *************************99888888.999****************99876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (481 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       580  (0.0323498); expected 358.6 (0.02)
Passed bias filter:                      264  (0.0147247); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.50u 0.23s 00:00:00.73 Elapsed: 00:00:00.40
# Mc/sec: 3574.49
//
Query:       KOO23899.1  [L=522]
Description: hypothetical protein Ctob_010321 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
      2e-31  109.8  23.8      2e-31  109.8  23.8    2.0  2  FA_desaturase  Fatty acid desaturase
    1.6e-06   28.2   0.0    3.1e-06   27.2   0.0    1.4  1  Cyt-b5         Cytochrome b5-like Heme/Steroid binding domain


Domain annotation for each model (and alignments):
>> FA_desaturase  Fatty acid desaturase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   1.7      0.49   4.4e+03      58     107 ..     132     184 ..     129     233 .. 0.51
   2 !  109.8  23.8   2.2e-35     2e-31       4     252 ..     234     470 ..     231     472 .. 0.76

  Alignments for each domain:
  == domain 1  score: -2.8 bits;  conditional E-value: 0.49
  FA_desaturase  58 ysawrisH.lrHHay..tngpdeDpdlaplal.srfeglfryllrlllgllvlg 107
                     +awr++H  + H       +++ +d+++++  +   ++ ++l+rl + +  l+
     KOO23899.1 132 LHAWRAAHpGGTHWIdgF-AHRDATDVFHAFHsADATAMTKRLPRLRMPPPSLP 184
                    678999998888866744.44477777765555444444444555555555554 PP

  == domain 2  score: 109.8 bits;  conditional E-value: 2.2e-35
  FA_desaturase   4 lalllalllglfllgitgslaHeaaHgalfkkrklnrwlndllgallglplgisysawrisHlrHHay..tngpdeDpdlaplal.........sr 88 
                    +++l+++ll+l  ++ +g++aH+  Hg       + r++ ++   + +l++g s ++w+  H+ HHa+    g deD+   p++          sr
     KOO23899.1 234 MPWLATVLLALG-STSAGWVAHDFVHG-------RGRFCATMR-GFGALFNGHSATWWSNKHNLHHACtnQVGVDEDIMADPFFFlwapdpardSR 320
                    455555999**9.66667********8.......788883333.338999************99****8877778999999999899997544444 PP

  FA_desaturase  89 feglfryllrlllgllvlgwllalvlglwlrrlarrrapsksrrrkwrllawlllllawlglwlalllllglalllwlvplllllfllalvl..ny 182
                    +++l + ++  ++ +l++          w+    r+    +sr       awl++  +wl++ l++ ++lg+   ++l+ l+++ ++++  +  ++
     KOO23899.1 321 WRRLQHVYALPVYSVLFAL---------WRLNSVRTVF--TSRL--VGEGAWLAVHYTWLLACLPWQVALGH---VFLAGLMTATIVTVSHQteDL 400
                    4444444444444444444.........4433333333..3333..78899*******************99...555555555443332223355 PP

  FA_desaturase 183 veHyggdwgerqvetsasirsaswllnlltgnlnyHieHHlfPgvpwyrLpelhrrlrellpehglpyrs 252
                    ++ +++dw + q+  ++++ ++++++ +l+g+++y++eHHlfP++p yr+ +l +r+++l++eh + yr 
     KOO23899.1 401 YHEQQHDWVRAQIGATRDAATSNPFSEWLWGGMQYQLEHHLFPTMPRYRYAQLVPRVQQLCAEHQIEYRV 470
                    555559***********************************************************99985 PP

>> Cyt-b5  Cytochrome b5-like Heme/Steroid binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.2   0.0   3.5e-10   3.1e-06      19      67 ..     126     172 ..     115     205 .. 0.87

  Alignments for each domain:
  == domain 1  score: 27.2 bits;  conditional E-value: 3.5e-10
                 TTEEEECTTTCCCSTTCSHHHHTTTTSBBHHHHHHTTGGCHHHHHHHHG CS
      Cyt-b5  19 rgkVYDvskflskhpGgesailkyaGkDateafksvvhsekdaekllkk 67 
                 +g+ YD+  +   hpGg  +i+ +a +Dat+ f+++ hs + a  + k+
  KOO23899.1 126 DGEWYDLHAWRAAHPGGTHWIDGFAHRDATDVFHAF-HSAD-ATAMTKR 172
                 6777********************************.7766.5666554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (522 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       573  (0.0319594); expected 358.6 (0.02)
Passed bias filter:                      351  (0.0195772); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.52u 0.25s 00:00:00.77 Elapsed: 00:00:00.39
# Mc/sec: 3994.96
//
Query:       KOO23900.1  [L=291]
Description: dead-box ATP-dependent RNA helicase 20-like protein, partial [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    7.6e-47  159.3   0.0      1e-46  158.9   0.0    1.2  1  DEAD       DEAD/DEAH box helicase
  ------ inclusion threshold ------
      0.037   14.0   0.0      0.058   13.4   0.0    1.3  1  ResIII     Type III restriction enzyme, res subunit
        0.6   10.9   6.3        3.9    8.3   1.4    2.4  2  TetR_C_15  Tetracyclin repressor-like, C-terminal domain


Domain annotation for each model (and alignments):
>> DEAD  DEAD/DEAH box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  158.9   0.0   1.7e-50     1e-46       1     176 []      78     249 ..      78     249 .. 0.96

  Alignments for each domain:
  == domain 1  score: 158.9 bits;  conditional E-value: 1.7e-50
                 -HHHHHHHHHHHTTCEEEEEESTTSSHHHHHHHHHHHHHHHS...TTSTS-EEEEEESSHHHHHHHHHHHHHHTTTSTSEEEEEETTSSHHHHHHHHHT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD   1 tdiQaeaiplilgggdvlvaaeTGsGKTlaflipvlqivyet...kgktgpkalivePtreLaeqtlnnlkkfkkyidlrvlliiggvaardqlskldn 96 
                 t+iQ +a+p++l+g d+++ a+TGsGKTl f++p+l +++ +   +  +gp al+++PtreLa q+ +++ +f+   +++ ++i+ggv++  q+++l+ 
  KOO23900.1  78 TSIQMQAWPIALSGSDLIGLANTGSGKTLSFVLPALVHIVAQdylQPGDGPIALVLAPTRELAVQIKSECDRFGASSGVTSSAIYGGVPKGPQQRDLQT 176
                 78**********************************999888899999*************************************************99 PP

                 TCSEEEEEHHHHHHHHHCTSSHCTTEEEEEEETHHHHHHTTTHHHHHHHHHHSHHHCTTSTTTSEEEEEESSBSHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD  97 gvdivvgtpgrlddllstgklnlsqvrflVlDEadrlldqgfsdfinrilnqlpqitcdgklqrqvivlSATlpkdvkkl 176
                 gv++vv+tpgrl+d+l+ g  nl++v++lVlDEadr+ld gf+++++++++q        + +rq++++SAT+p++v++l
  KOO23900.1 177 GVELVVATPGRLLDFLDGGLTNLRRVTYLVLDEADRMLDLGFEPQLRQVMQQS-------RPDRQTLMCSATWPREVERL 249
                 9***************99999*******************************9.......35678**********99976 PP

>> ResIII  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.0   9.7e-06     0.058      32     146 ..      99     215 ..      94     244 .. 0.60

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 9.7e-06
                 STTSTHHHHH..HHHHHHH-S..........-EEEEESSHHHHHHHHHHGGGGTGG....GEEEESSS-B--........-SEEEEEHHHHHHTH.... CS
      ResIII  32 aTGtGKTlva..aklierllkkgkee.....kflflvprkslleqtleefkkflseaykeigkkvsgdkkka.kekdstnkkilvttiqsldadseeee 122
                  TG+GKTl     +l+  +++  + +      +l+l+p+++l  q ++e  +f  +     + ++ g  k + ++  +t  +++v+t  +l   +    
  KOO23900.1  99 NTGSGKTLSFvlPALVHIVAQD-YLQpgdgpIALVLAPTRELAVQIKSECDRFGASSGVTSSAIYGGVPKGPqQRDLQTGVELVVATPGRLLDFL---- 192
                 6******865313444444443.33347777****************988888776654433333333332222336777788888877777777.... PP

                 ....HHHTTT-SEEEEETGGGTTS CS
      ResIII 123 eeseellrdrfdviiiDEaHrlga 146
                  +       r  +++ DEa r+ +
  KOO23900.1 193 -DGGLTNLRRVTYLVLDEADRMLD 215
                 .33333444444666666666655 PP

>> TetR_C_15  Tetracyclin repressor-like, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.3   1.4   0.00066       3.9      15      78 ..      18      80 ..      17      85 .. 0.92
   2 ?    4.8   0.2    0.0078        47      20      57 ..     219     256 ..     210     272 .. 0.88

  Alignments for each domain:
  == domain 1  score: 8.3 bits;  conditional E-value: 0.00066
   TetR_C_15 15 aahrenpalrrvlleeapslgelelvealeqriaealaalLarrrpelppedlelaafvaveav 78
                ++++e+pa+ ++  +e ++ +++ ++ ++  r  + ++++L+++ pe   ++le a f+a +++
  KOO23900.1 18 DFYMEHPAVAALDEREVARWRRQ-HHIEVTSRAPKPVRTFLEAAFPEFITAELEAAGFTAPTSI 80
                79***************999999.88899999***************999******99998876 PP

  == domain 2  score: 4.8 bits;  conditional E-value: 0.0078
   TetR_C_15  20 npalrrvlleeapslgelelvealeqriaealaalLar 57 
                 +p+lr+v+++ +p+ ++l  ++   ++++++++++L++
  KOO23900.1 219 EPQLRQVMQQSRPDRQTLMCSATWPREVERLAREWLRE 256
                 49*******************************99986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (291 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       325  (0.0181271); expected 358.6 (0.02)
Passed bias filter:                      293  (0.0163422); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.41u 0.25s 00:00:00.65 Elapsed: 00:00:00.40
# Mc/sec: 2188.92
//
Query:       KOO23901.1  [L=487]
Description: kelch repeat [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    7.6e-31  105.9   3.1    1.2e-05   25.2   0.1    5.6  5  Kelch_4   Galactose oxidase, central domain
    3.8e-29  101.2   0.2    1.7e-28   99.0   0.1    2.0  2  BTB       BTB/POZ domain
      7e-26   89.7   0.0      0.002   18.1   0.0    5.6  5  Kelch_5   Kelch motif
    7.5e-23   79.6   0.1    0.00061   19.7   0.0    5.8  6  Kelch_2   Kelch motif
    7.6e-21   73.6   0.7    1.2e-05   25.5   0.0    5.6  5  Kelch_6   Kelch motif
    1.3e-20   72.7   0.1    0.00034   20.1   0.0    5.5  5  Kelch_1   Kelch motif
    7.9e-19   67.5  18.4    4.1e-05   23.7   0.0    6.5  8  Kelch_3   Galactose oxidase, central domain
    0.00011   22.3   0.1    0.00051   20.1   0.0    2.0  2  BACK      BTB And C-terminal Kelch


Domain annotation for each model (and alignments):
>> Kelch_4  Galactose oxidase, central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.2   0.1   5.5e-09   1.2e-05       4      42 ..      17      58 ..      15      67 .. 0.93
   2 !   19.6   0.0   2.9e-07   0.00065       4      38 ..      72     109 ..      70     110 .. 0.94
   3 !   18.9   0.0   4.9e-07    0.0011       4      43 ..     129     171 ..     127     177 .. 0.90
   4 !   20.4   0.0   1.7e-07   0.00038       2      47 ..     182     235 ..     181     237 .. 0.76
   5 !   17.2   0.0   1.7e-06    0.0039       2      37 ..     239     278 ..     238     282 .. 0.85

  Alignments for each domain:
  == domain 1  score: 25.2 bits;  conditional E-value: 5.5e-09
     Kelch_4  4 ghsatsipdgtiylfGGrgedg....tllndlylldlstntWr 42
                gh+at+++   i++fGG  +d       +ndl++ld+ t tW+
  KOO23901.1 17 GHTATVVG-QLIFIFGGTWTDEedrtIYMNDLHVLDVRTLTWS 58
                8******6.9**********999*******************6 PP

  == domain 2  score: 19.6 bits;  conditional E-value: 2.9e-07
     Kelch_4   4 ghsatsipdgtiylfGGrgedg....tllndlylldlst 38 
                 gh+a+++   ++++fGG   d+      lndl+lld++t
  KOO23901.1  72 GHTAVAV-ETRLFIFGGTWVDDedqsHYLNDLHLLDVET 109
                 8******.69***********9**************997 PP

  == domain 3  score: 18.9 bits;  conditional E-value: 4.9e-07
     Kelch_4   4 ghsatsipdgtiylfGGrgedg....tllndlylldlstntWrr 43 
                 gh++ +++   i++fGG+g d       lndl++ld++   W+r
  KOO23901.1 129 GHTSSVVG-AQIVVFGGAGLDVedrpVNLNDLHILDTERMAWSR 171
                 8******6.9**********8689*************9988865 PP

  == domain 4  score: 20.4 bits;  conditional E-value: 1.7e-07
     Kelch_4   2 RaghsatsipdgtiylfGGrgedgtllndlyl........ldlstntWrrl...gsl 47 
                 R++hsa ++ d ++++fGG++ ++   +dl++        +d+ t +W ++   +++
  KOO23901.1 182 RRYHSASVV-DQRLFVFGGQYYNA--EADLHFecdnalctFDADTLSWATVavdSAS 235
                 99*******.6***********86..5555554444555599999999888666444 PP

  == domain 5  score: 17.2 bits;  conditional E-value: 1.7e-06
     Kelch_4   2 RaghsatsipdgtiylfGGrgedg.....tllndlylldls 37 
                 Ra+h+a ++ +  ++l+GGr++d       +lnd+ +ld++
  KOO23901.1 239 RACHAAGVV-SKQVFLIGGRYWDVaeddyIFLNDIQVLDTQ 278
                 9********.69**********8568888888888888876 PP

>> BTB  BTB/POZ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   99.0   0.1   7.7e-32   1.7e-28       5     108 ..     291     391 ..     288     394 .. 0.95
   2 ?   -0.3   0.0      0.57   1.3e+03      82     108 ..     397     423 ..     389     425 .. 0.84

  Alignments for each domain:
  == domain 1  score: 99.0 bits;  conditional E-value: 7.7e-32
                 HHHTTTS-EEEEETTTEEEEE-HHHHHHH-HHHHHHHTSTTTTTCCCEEEEETTSGHHHHHHHHHHHHHSEEEC-CGGGHHHHHHHHHHHT-HHHHHHH CS
         BTB   5 resgelcDvtlvvgdgkefkahkavLaarSpyFkalftskeieessvseielddvepeafealLefiYtgeleitseenleelLaaadllqiprlkkac 103
                 +++  l+D+t++vg g++++ah++vLaar  yF+ +f+s+ ++es+++e+ l+d+++++f+alLe +Yt+++++t +e + el+aaad+l +++lk +c
  KOO23901.1 291 LNNPLLSDITIMVG-GTRVHAHRVVLAARCAYFRGMFESG-MKESTQTEVSLEDMSYDVFRALLEHLYTDRVDVT-SEIALELFAAADFLGVEQLKSIC 386
                 677899********.9************************.9********************************8.9********************** PP

                 HHHHH CS
         BTB 104 eeflk 108
                  ++++
  KOO23901.1 387 VSKIE 391
                 98876 PP

  == domain 2  score: -0.3 bits;  conditional E-value: 0.57
                 GGHHHHHHHHHHHT-HHHHHHHHHHHH CS
         BTB  82 enleelLaaadllqiprlkkaceeflk 108
                 +++ ++L++ad+     lk++c +++ 
  KOO23901.1 397 DTVCHTLTVADKHSATPLKDVCVRYIV 423
                 578899****************99886 PP

>> Kelch_5  Kelch motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   0.0   3.1e-06    0.0069       2      41 ..      12      54 ..      11      55 .. 0.90
   2 !   15.4   0.0   6.1e-06     0.014       2      41 ..      67     109 ..      66     110 .. 0.86
   3 !   18.1   0.0   8.7e-07     0.002       2      39 ..     124     164 ..     123     165 .. 0.91
   4 !   17.2   0.0   1.7e-06    0.0037       1      23 [.     178     200 ..     178     207 .. 0.94
   5 !   15.4   0.0   6.1e-06     0.014       2      39 ..     236     277 ..     235     278 .. 0.85

  Alignments for each domain:
  == domain 1  score: 16.4 bits;  conditional E-value: 3.1e-06
     Kelch_5  2 PppRaghcavtvsekiYvyGGkvg...rdgsvsddvyvLdlps 41
                P  R gh a +v++ i+++GG  +    + ++ +d++vLd+++
  KOO23901.1 12 PKEREGHTATVVGQLIFIFGGTWTdeeDRTIYMNDLHVLDVRT 54
                56799****************999998888888*******987 PP

  == domain 2  score: 15.4 bits;  conditional E-value: 6.1e-06
     Kelch_5   2 PppRaghcavtvsekiYvyGG.kvg..rdgsvsddvyvLdlps 41 
                 P  R gh av+v++ ++++GG +v    ++++ +d++ Ld+++
  KOO23901.1  67 PIEREGHTAVAVETRLFIFGGtWVDdeDQSHYLNDLHLLDVET 109
                 889******************6454677888899999999987 PP

  == domain 3  score: 18.1 bits;  conditional E-value: 8.7e-07
     Kelch_5   2 PppRaghcavtvsekiYvyGGkvg...rdgsvsddvyvLdl 39 
                 P++R gh + +v+ +i v+GG +     +    +d+++Ld+
  KOO23901.1 124 PSQREGHTSSVVGAQIVVFGGAGLdveDRPVNLNDLHILDT 164
                 999*********************987777778******97 PP

  == domain 4  score: 17.2 bits;  conditional E-value: 1.7e-06
     Kelch_5   1 iPppRaghcavtvsekiYvyGGk 23 
                 iP+ R++h+a +v++ ++v+GG 
  KOO23901.1 178 IPQERRYHSASVVDQRLFVFGGQ 200
                 7*********************5 PP

  == domain 5  score: 15.4 bits;  conditional E-value: 6.1e-06
     Kelch_5   2 PppRaghcavtvsekiYvyGGkv...g.rdgsvsddvyvLdl 39 
                 P  Ra+h+a +vs +++++GG+    +  d ++ +d+ vLd+
  KOO23901.1 236 PLRRACHAAGVVSKQVFLIGGRYwdvAeDDYIFLNDIQVLDT 277
                 889******************986555666666799999986 PP

>> Kelch_2  Kelch motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.6   0.0   1.1e-05     0.025       4      44 ..      17      59 ..      14      60 .. 0.95
   2 !   11.5   0.0    0.0001      0.23       4      39 ..      72     109 ..      69     111 .. 0.93
   3 !   19.7   0.0   2.7e-07   0.00061       4      44 ..     129     171 ..     126     174 .. 0.92
   4 !   13.7   0.0     2e-05     0.045       2      46 ..     182     230 ..     181     233 .. 0.82
   5 !   12.5   0.0   4.8e-05      0.11       1      37 [.     238     277 ..     238     279 .. 0.88
   6 ?   -3.9   0.0       7.5   1.7e+04      30      38 ..     297     305 ..     292     308 .. 0.51

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 1.1e-05
     Kelch_2  4 ghsssvpggkiyvvGGa..htdnpnlsssdvhvldlekhvWee 44
                gh+++v+g+ i+++GG   ++ +   + +d+hvld ++ +W++
  KOO23901.1 17 GHTATVVGQLIFIFGGTwtDEEDRTIYMNDLHVLDVRTLTWSL 59
                8****************************************85 PP

  == domain 2  score: 11.5 bits;  conditional E-value: 0.0001
     Kelch_2   4 ghsssvpggkiyvvGGa..htdnpnlsssdvhvldlek 39 
                 gh+++ ++ +++++GG   ++ + +++ +d+h ld e+
  KOO23901.1  72 GHTAVAVETRLFIFGGTwvDDEDQSHYLNDLHLLDVET 109
                 8******************999999*******999887 PP

  == domain 3  score: 19.7 bits;  conditional E-value: 2.7e-07
     Kelch_2   4 ghsssvpggkiyvvGGa..htdnpnlsssdvhvldlekhvWee 44 
                 gh+ssv+g +i+v+GGa  +  + +   +d+h+ld+e   W++
  KOO23901.1 129 GHTSSVVGAQIVVFGGAglDVEDRPVNLNDLHILDTERMAWSR 171
                 8****************99888888899*************86 PP

  == domain 4  score: 13.7 bits;  conditional E-value: 2e-05
     Kelch_2   2 rgghsssvpggkiyvvGGa....htdnpnlsssdvhvldlekhvWeevt 46 
                 r  hs+sv++++++v+GG     ++d+  +  + + ++d ++ +W+ v+
  KOO23901.1 182 RRYHSASVVDQRLFVFGGQyynaEADLHFECDNALCTFDADTLSWATVA 230
                 778***************8888888888777888888888888887775 PP

  == domain 5  score: 12.5 bits;  conditional E-value: 4.8e-05
     Kelch_2   1 rrgghsssvpggkiyvvGGa...htdnpnlsssdvhvldl 37 
                 rr++h++ v+  +++++GG+    + ++  + +d++vld+
  KOO23901.1 238 RRACHAAGVVSKQVFLIGGRywdVAEDDYIFLNDIQVLDT 277
                 79******************99988888888888888886 PP

  == domain 6  score: -3.9 bits;  conditional E-value: 7.5
     Kelch_2  30 sdvhvldle 38 
                 sd+ ++  +
  KOO23901.1 297 SDITIMVGG 305
                 444444444 PP

>> Kelch_6  Kelch motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.5   0.0   5.1e-09   1.2e-05       4      42 ..      17      59 ..      14      70 .. 0.89
   2 !   17.0   0.0   2.4e-06    0.0053       4      38 ..      72     110 ..      69     117 .. 0.92
   3 !    8.3   0.0    0.0013       2.9       4      41 ..     129     170 ..     127     179 .. 0.89
   4 !   15.1   0.1   9.5e-06     0.021       2      44 ..     182     230 ..     181     241 .. 0.86
   5 ?    0.7   0.0      0.33   7.4e+02       9      35 ..     246     277 ..     237     287 .. 0.73

  Alignments for each domain:
  == domain 1  score: 25.5 bits;  conditional E-value: 5.1e-09
     Kelch_6  4 ghslvsvggkiYifGGytds....spylnkvwvydpetksWeq 42
                gh++++vg  i+ifGG   +    + y n+++v+d++t +W+ 
  KOO23901.1 17 GHTATVVGQLIFIFGGTWTDeedrTIYMNDLHVLDVRTLTWSL 59
                89***************9999********************95 PP

  == domain 2  score: 17.0 bits;  conditional E-value: 2.4e-06
     Kelch_6   4 ghslvsvggkiYifGGytds....spylnkvwvydpetk 38 
                 gh++v+v  +++ifGG   +    s yln+++++d+et+
  KOO23901.1  72 GHTAVAVETRLFIFGGTWVDdedqSHYLNDLHLLDVETM 110
                 8****************8888****************95 PP

  == domain 3  score: 8.3 bits;  conditional E-value: 0.0013
     Kelch_6   4 ghslvsvggkiYifGGytds....spylnkvwvydpetksWe 41 
                 gh++ +vg +i++fGG++ +       ln+++++d e + W+
  KOO23901.1 129 GHTSSVVGAQIVVFGGAGLDvedrPVNLNDLHILDTERMAWS 170
                 7889999999********99**9977799*******999997 PP

  == domain 4  score: 15.1 bits;  conditional E-value: 9.5e-06
     Kelch_6   2 raghslvsvggkiYifGGytds......spylnkvwvydpetksWeqlp 44 
                 r +hs+ +v+ ++++fGG++        ++  n ++ +d +t sW +++
  KOO23901.1 182 RRYHSASVVDQRLFVFGGQYYNaeadlhFECDNALCTFDADTLSWATVA 230
                 789****************888899999666699999999999998875 PP

  == domain 5  score: 0.7 bits;  conditional E-value: 0.33
     Kelch_6   9 svggkiYifGGytds.....spylnkvwvydp 35 
                 +v  +++++GG++ +       +ln+++v+d 
  KOO23901.1 246 VVSKQVFLIGGRYWDvaeddYIFLNDIQVLDT 277
                 56778999999964467777888888888875 PP

>> Kelch_1  Kelch motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.1   0.0   1.5e-07   0.00034       2      40 ..      15      58 ..      14      59 .. 0.96
   2 !   12.2   0.0   4.5e-05       0.1       2      36 ..      70     109 ..      69     109 .. 0.92
   3 ?    4.3   0.0     0.013        29       2      35 ..     127     165 ..     126     171 .. 0.73
   4 !   12.7   0.0   3.3e-05     0.073       2      21 ..     182     201 ..     181     218 .. 0.91
   5 !   16.2   0.0   2.5e-06    0.0056       1      34 [.     238     277 ..     238     282 .. 0.96

  Alignments for each domain:
  == domain 1  score: 20.1 bits;  conditional E-value: 1.5e-07
                BBSEEEEEETTEEEEEEEBCS.....SSBEEEEEEEETTTTEEE CS
     Kelch_1  2 ragagavvvggkiYviGGsdg.....gnalssvevyDpetntWr 40
                r g++a+vvg  i+++GG          +++++ v+D++t tW+
  KOO23901.1 15 REGHTATVVGQLIFIFGGTWTdeedrTIYMNDLHVLDVRTLTWS 58
                569****************************************8 PP

  == domain 2  score: 12.2 bits;  conditional E-value: 4.5e-05
                 BBSEEEEEETTEEEEEEEBCS.....SSBEEEEEEEETTT CS
     Kelch_1   2 ragagavvvggkiYviGGsdg.....gnalssvevyDpet 36 
                 r g++av+v ++++++GG        + +l+++  +D+et
  KOO23901.1  70 REGHTAVAVETRLFIFGGTWVddedqSHYLNDLHLLDVET 109
                 669*****************99999999999999999886 PP

  == domain 3  score: 4.3 bits;  conditional E-value: 0.013
                 BBSEEEEEETTEEEEEEEBCS.....SSBEEEEEEEETT CS
     Kelch_1   2 ragagavvvggkiYviGGsdg.....gnalssvevyDpe 35 
                 r g+++ vvg +i v+GG        +  l+++ ++D+e
  KOO23901.1 127 REGHTSSVVGAQIVVFGGAGLdvedrPVNLNDLHILDTE 165
                 668999***********9555566666666666666665 PP

  == domain 4  score: 12.7 bits;  conditional E-value: 3.3e-05
                 BBSEEEEEETTEEEEEEEBC CS
     Kelch_1   2 ragagavvvggkiYviGGsd 21 
                 r++++a vv+ +++v+GG+ 
  KOO23901.1 182 RRYHSASVVDQRLFVFGGQY 201
                 89****************86 PP

  == domain 5  score: 16.2 bits;  conditional E-value: 2.5e-06
                 BBBSEEEEEETTEEEEEEEBCS......SSBEEEEEEEET CS
     Kelch_1   1 aragagavvvggkiYviGGsdg......gnalssvevyDp 34 
                 +ra+++a vv  +++ iGG+        + +l+++ v+D+
  KOO23901.1 238 RRACHAAGVVSKQVFLIGGRYWdvaeddYIFLNDIQVLDT 277
                 7**************************************8 PP

>> Kelch_3  Galactose oxidase, central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.0       4.3   9.6e+03      40      48 ..      14      22 ..       6      23 .. 0.77
   2 !   16.5   0.0   3.4e-06    0.0077       3      48 ..      26      77 ..      24      78 .. 0.83
   3 !   16.7   0.1   2.9e-06    0.0065       3      48 ..      81     134 ..      80     135 .. 0.88
   4 !   23.7   0.0   1.8e-08   4.1e-05       2      48 ..     137     189 ..     136     190 .. 0.94
   5 !   16.3   0.3   3.9e-06    0.0088       3      46 ..     193     244 ..     191     247 .. 0.78
   6 ?   -3.5   0.0       6.4   1.4e+04      17      27 ..     268     278 ..     263     289 .. 0.67
   7 ?   -3.5   0.3       6.5   1.5e+04      42      49 .]     399     406 ..     398     406 .. 0.86
   8 ?    3.4   0.1     0.043        97      25      46 ..     439     463 ..     431     466 .. 0.73

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 4.3
     Kelch_3 40 aRaghaata 48
                 R gh+at+
  KOO23901.1 14 EREGHTATV 22
                6889***97 PP

  == domain 2  score: 16.5 bits;  conditional E-value: 3.4e-06
     Kelch_3  3 rlyifGGlgddgqdrl...ndvyvydldtntWaei..aslpp.aRaghaata 48
                 ++ifGG  +d +dr+   nd++v+d+ t tW     + +pp  R gh+a+a
  KOO23901.1 26 LIFIFGGTWTDEEDRTiymNDLHVLDVRTLTWSLPvtSGCPPiEREGHTAVA 77
                699****888666666666**************5556999*********997 PP

  == domain 3  score: 16.7 bits;  conditional E-value: 2.9e-06
     Kelch_3   3 rlyifGGlgd...dgqdrlndvyvydldtn..tWa.ei..aslppaRaghaata 48 
                 rl+ifGG      d   +lnd++++d++t    W   +  +++p+ R gh++++
  KOO23901.1  81 RLFIFGGTWVddeDQSHYLNDLHLLDVETMpmGWSvGVcsGEPPSQREGHTSSV 134
                 699****877788889999*************99963369***********997 PP

  == domain 4  score: 23.7 bits;  conditional E-value: 1.8e-08
     Kelch_3   2 drlyifGGlgd...dgqdrlndvyvydldtntWaei...aslppaRaghaata 48 
                   +++fGG+g    d+  +lnd++ +d+++  W +    ++ p+ R++h+a++
  KOO23901.1 137 AQIVVFGGAGLdveDRPVNLNDLHILDTERMAWSRPvvsGRIPQERRYHSASV 189
                 569**********999999***************99999************97 PP

  == domain 5  score: 16.3 bits;  conditional E-value: 3.9e-06
     Kelch_3   3 rlyifGGlgddg.....qdrlndvyvydldtntWaei...aslppaRaghaa 46 
                 rl++fGG   +       +++n++  +d dt +Wa++   + +p  Ra+haa
  KOO23901.1 193 RLFVFGGQYYNAeadlhFECDNALCTFDADTLSWATVavdSASPLRRACHAA 244
                 789999998744322224555**************9999888999******8 PP

  == domain 6  score: -3.5 bits;  conditional E-value: 6.4
     Kelch_3  17 rlndvyvydld 27 
                 +lnd  v+d++
  KOO23901.1 268 FLNDIQVLDTQ 278
                 67888888874 PP

  == domain 7  score: -3.5 bits;  conditional E-value: 6.5
     Kelch_3  42 aghaatai 49 
                 ++h++t++
  KOO23901.1 399 VCHTLTVA 406
                 69***985 PP

  == domain 8  score: 3.4 bits;  conditional E-value: 0.043
     Kelch_3  25 dldtn..tWa..ei.aslppaRaghaa 46 
                 +   n  tW    + a++ppa ag+++
  KOO23901.1 439 SR--NllTWVhaGVaARMPPAGAGASG 463
                 44..44499955337**********97 PP

>> BACK  BTB And C-terminal Kelch
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.0      0.98   2.2e+03       2      26 ..     368     392 ..     367     395 .. 0.83
   2 !   20.1   0.0   2.3e-07   0.00051       2      45 ..     400     443 ..     399     446 .. 0.93

  Alignments for each domain:
  == domain 1  score: -1.2 bits;  conditional E-value: 0.98
        BACK   2 lgilefAeaysceeLaeaakefilk 26 
                 l+++  A+ +++e+L++ + + i++
  KOO23901.1 368 LELFAAADFLGVEQLKSICVSKIES 392
                 788999*********9999887765 PP

  == domain 2  score: 20.1 bits;  conditional E-value: 2.3e-07
        BACK   2 lgilefAeaysceeLaeaakefilknfeevlkseeFleLskeql 45 
                 ++ l +A+++s + L++++ ++i ++f+e+ ++  F  Ls + l
  KOO23901.1 400 CHTLTVADKHSATPLKDVCVRYIVDHFKEIHSTAGFHALSRNLL 443
                 678899*********************************99877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (487 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       352  (0.019633); expected 358.6 (0.02)
Passed bias filter:                      326  (0.0181828); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.49u 0.23s 00:00:00.72 Elapsed: 00:00:00.38
# Mc/sec: 3837.01
//
Query:       KOO23902.1  [L=232]
Description: hypothetical protein Ctob_001932 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
     0.0012   19.1   7.8     0.0024   18.2   7.8    1.4  1  Flagellin_C  Bacterial flagellin C-terminal helical region
  ------ inclusion threshold ------
      0.035   13.9   0.3      0.079   12.8   0.3    1.6  1  IQ           IQ calmodulin-binding motif
       0.19   10.8   1.4       0.28   10.3   1.4    1.2  1  Atg14        Vacuolar sorting 38 and autophagy-related subuni


Domain annotation for each model (and alignments):
>> Flagellin_C  Bacterial flagellin C-terminal helical region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.2   7.8     4e-07    0.0024       5      72 ..     115     182 ..     111     188 .. 0.94

  Alignments for each domain:
  == domain 1  score: 18.2 bits;  conditional E-value: 4e-07
                  HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHCHHCCHHHHHHHHHHHHHHHHHHHHHHHH CS
  Flagellin_C   5 deaitdldkvrselGavqnRlesaitnlkaqsenlkaaesrledvDpaeestrvtklqiliqasyall 72 
                  + a+t l++++s+l a  +R +   t l+ q+  ++++ ++l ++D a++ ++ + +++++q+ ++l+
   KOO23902.1 115 TAASTMLAEMQSQLDAEVERSDALQTLLDEQVAAFNEQAVKLAEADAAQAEAEAALATTQLQLEQTLV 182
                  6789**********************************************************999987 PP

>> IQ  IQ calmodulin-binding motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.3   1.3e-05     0.079       1      19 [.     201     219 ..     201     220 .. 0.92

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 1.3e-05
                 HHHHHHHHHHHHHHHHHHH CS
          IQ   1 rkaaikIQaawRGylaRkr 19 
                 +++a+++Qa  RG + Rk 
  KOO23902.1 201 HASATRLQALARGKQSRKS 219
                 689**************95 PP

>> Atg14  Vacuolar sorting 38 and autophagy-related subunit 14
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   1.4   4.6e-05      0.28      17     127 ..      63     179 ..      58     190 .. 0.89

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 4.6e-05
       Atg14  17 lrng......perlyelrerlaklksekeslkkkiekalegkeeaeqledkiknkkakleelksliadlrerlqelkdklsqlkkeieekkkklaklsd 109
                 +r+g      pe ++el+e la   ++ ++ +++ + +    +++ ++++ +   ++ l e++s+     er   l++ l+++ ++ +e+  kla+ ++
  KOO23902.1  63 ARSGgeerppPETVIELKEALAAAEARAAAAEQRASTLAFAASAGLSEDSVATAASTMLAEMQSQLDAEVERSDALQTLLDEQVAAFNEQAVKLAEADA 161
                 5677777888999***********************98888887878888888888999999************************************* PP

       Atg14 110 klkkRrsdleslqnelee 127
                 + ++  + l+ +q +le+
  KOO23902.1 162 AQAEAEAALATTQLQLEQ 179
                 *99888887777777776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (232 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1506  (0.083998); expected 358.6 (0.02)
Passed bias filter:                      415  (0.0231469); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.45u 0.25s 00:00:00.70 Elapsed: 00:00:00.41
# Mc/sec: 1683.01
//
Query:       KOO23903.1  [L=290]
Description: sugar porter family mfs transporter [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.1e-33  115.3   6.5      4e-33  115.0   6.5    1.1  1  Sugar_tr    Sugar (and other) transporter
    1.6e-15   56.9  16.5    1.8e-15   56.7  16.5    1.1  1  MFS_1       Major Facilitator Superfamily
    0.00053   18.9   4.1    0.00077   18.4   4.1    1.1  1  MFS_1_like  MFS_1 like family


Domain annotation for each model (and alignments):
>> Sugar_tr  Sugar (and other) transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  115.0   6.5   6.6e-37     4e-33       2     202 ..       7     209 ..       6     215 .. 0.91

  Alignments for each domain:
  == domain 1  score: 115.0 bits;  conditional E-value: 6.6e-37
                 HHHHHHHHHHHHHHHHCGGGTHHHHHHHHTSTT--SHHHHHH...HHHHHHHTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH-TTTTS CS
    Sugar_tr   2 alvaalggllfgYdtgvigafltllkfaknfglsksksskeessvlsglivsiflvGaiiGslfagllgdrfGRkkslliaavlfvigavlqaaakgkn 100
                 +++a  gg+lfgY++gvi+++l ll   +n  l+  ++++e       liv+ + vGa++++l++ ++ ++ G   ++ +a++ fv+g +l aa    +
  KOO23903.1   7 TVFAGAGGFLFGYNLGVIAGVLPLLRNDTNLALD--DTMTE-------LIVGQAKVGAALSALIGTWVLQTRGHVTVFWVAGLAFVAGPILVAAGS--S 94 
                 56677899******************55555544..44445.......9******************************************99988..7 PP

                 S-TGGGGGHHHHHHHHHHHHHHHHHHHHTTS-SCCHHHHHHHHHHHHHHHHHHHHHHHHHH..HTSS-...........TTHHHHHHHCCHHHHHHHHH CS
    Sugar_tr 101 svevlivgRvlvGigvGlasvlvPmyisEiApkklRgalvslyqlaitfGilvaaifglgl..nktsn...........adgwrillglqlvpalllli 186
                 ++ ++++gR+l+G+++Gl  v +P+y++E++p++ Rg+++s+y+l++t+G l aa++++ l  +++ +            + wri ++l  + al  ++
  KOO23903.1  95 HWVMVAAGRLLTGVALGLSAVASPTYLAEVTPARSRGFVISMYDLMLTMGALTAAGVNALLqvQEVVDwldanrianvvLEPWRIAFALPGLAALPYFL 193
                 9*********************************************************9994445555*******9999889***************** PP

                 HGGGS---HHHHHHTT CS
    Sugar_tr 187 lllflPESPrylvekg 202
                 + l lPE+P +l ++g
  KOO23903.1 194 CSLCLPETPAFLAQRG 209
                 ************9987 PP

>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.7  16.5     3e-19   1.8e-15       4     174 ..      13     200 ..      10     241 .. 0.87

  Alignments for each domain:
  == domain 1  score: 56.7 bits;  conditional E-value: 3e-19
       MFS_1   4 aaflsalarsilgpalplalaedlgispse..igllltlyalgaavaslplGrlsdrfGrrrvlllglllfalg.lllllfasslw.lllvlrvlqGlg 98 
                 ++fl +++ ++++ +lp +l +d +++ +     l+++   +gaa+++l++ ++ +  G+  v++++ l+f++g +l+++ +ss+w +++++r+l+G++
  KOO23903.1  13 GGFLFGYNLGVIAGVLP-LLRNDTNLALDDtmTELIVGQAKVGAALSALIGTWVLQTRGHVTVFWVAGLAFVAGpILVAA-GSSHWvMVAAGRLLTGVA 109
                 789**************.899998855555116667777889********************************444444.5999*9************ PP

       MFS_1  99 agalfpagaaliadwfpkeergraigllsagfslGailgpllgglla.sslg...............Wravfyilaivsllafvlfllllpe 174
                  g+++ a+ +++a+++p + rg++i+++ ++  +Ga+ ++++ +ll  + +                Wr +f + ++++l  f++ l  lpe
  KOO23903.1 110 LGLSAVASPTYLAEVTPARSRGFVISMYDLMLTMGALTAAGVNALLQvQEVVdwldanrianvvlepWRIAFALPGLAALPYFLCSL-CLPE 200
                 ******************************************99887444448999**************************99833.3333 PP

>> MFS_1_like  MFS_1 like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.4   4.1   1.3e-07   0.00077     279     357 ..      61     140 ..      44     152 .. 0.89

  Alignments for each domain:
  == domain 1  score: 18.4 bits;  conditional E-value: 1.3e-07
  MFS_1_like 279 faeklleklGhvklliiallayilrfllyaiienawlvlpi.evLhgisfgllwaaaveyvskiapksleatgqgllsgl 357
                 ++ ++l++ Ghv++  +a la+++  +l+a+ ++ w+++ +  +L g+++gl  +a  +y ++++p + ++++++++  +
  KOO23903.1  61 IGTWVLQTRGHVTVFWVAGLAFVAGPILVAAGSSHWVMVAAgRLLTGVALGLSAVASPTYLAEVTPARSRGFVISMYDLM 140
                 678999******************************9998836899******************************9855 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (290 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       635  (0.0354175); expected 358.6 (0.02)
Passed bias filter:                      381  (0.0212505); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.46u 0.23s 00:00:00.69 Elapsed: 00:00:00.40
# Mc/sec: 2189.56
//
Query:       KOO23904.1  [L=425]
Description: protein of unknown function duf250 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.6e-09   37.6   7.2    3.5e-09   36.4   7.2    1.5  1  TPT       Triose-phosphate Transporter family
    8.3e-07   28.5   7.7    1.2e-06   27.9   7.7    1.3  1  UAA       UAA transporter family
    2.2e-05   24.7  22.5     0.0011   19.2   4.7    2.9  2  EamA      EamA-like transporter family


Domain annotation for each model (and alignments):
>> TPT  Triose-phosphate Transporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.4   7.2   5.8e-13   3.5e-09      27     289 ..      88     370 ..      55     371 .. 0.75

  Alignments for each domain:
  == domain 1  score: 36.4 bits;  conditional E-value: 5.8e-13
         TPT  27 vfpyPltvsavqllvgsvlilvlwalglkkrpkisse.....flkailplalvktlghvlavvslskvaVSfthtvKasePiFtvilsrlllgeklsll 120
                 +f +P++ s+ +++   + + +l  + + + +++ s      +   ++p+a + +++  l + s++ v+    + ++a+ P+ tv+l  +++g ++   
  KOO23904.1  88 AFCFPVFYSMWHMFFSALAAYLLACVAMPNGKDLPSFaqlwrYKHGLIPIACCTAISTWLNNWSFTLVSLFLNQAIRAMGPLPTVVLEYIIIGRNPGAP 186
                 5689*********999988777776666664444432222437778***************************************************** PP

         TPT 121 vylsLlpivgGvalas...vtEls........Fn..ligfisAlisnltfslrnifsKkllkk.lkd...ldalnlfaiitilslllllPvallvegvl 202
                 ++ ++  i  G +l+    ++E+         F+  ++gf    is l +slr +++  l+++ +     ld   ++++   l++ ++l  + +  +  
  KOO23904.1 187 IVACVGFICIGSILSCayrFQEAYiappdtsgFDdvWLGFAMVSISILLSSLRPVIAMILMSGtE-ThpkLDPAVVLFYDCSLAFWFMLLYWTAGPE-- 282
                 *****99999988765222456532222233365679*************************942.3567999999999999999888888887766.. PP

         TPT 203 ktpsllkstkvslkevllllllsg.vlfhlynqvaymvLervspvthsva.ntvKrvvvIvlsvlvfknpvs.llnaiGtavaivGvflY 289
                 + psl+  ++ +++ v +++++ g  + ++yn  +y  ++ +s+vt +++ n+vK  ++Iv++  +  n v+ + +  G+a++i+ +  Y
  KOO23904.1 283 REPSLAYLADPATRWVGVHVITVGsSMAFMYNLATYYYVNLTSAVTATIGaNAVKITLIIVAA--MQDNDVQdVYTWAGVALVIISIAAY 370
                 566666666433444555555544135679*******************72666655555554..4566666245678888888877766 PP

>> UAA  UAA transporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.9   7.7   2.1e-10   1.2e-06      68     301 ..     137     373 ..      93     374 .. 0.79

  Alignments for each domain:
  == domain 1  score: 27.9 bits;  conditional E-value: 2.1e-10
         UAA  68 lvalffitsvlnnealkydisvPvhiifrssklipvmilGililgkrYsllqylsvllltlGviiftllsakdk..kedskeslnkfllGiallvlall 164
                 ++  + i+++lnn ++   +s+ +   +r+ + +p+ +l  +i g+      +++v ++++G i+   ++ ++   + + ++ + +  lG+a++++++l
  KOO23904.1 137 IACCTAISTWLNNWSFTL-VSLFLNQAIRAMGPLPTVVLEYIIIGRNPGAPIVACVGFICIGSILSCAYRFQEAyiAPPDTSGFDDVWLGFAMVSISIL 234
                 5678899***********.*******************************************999888888888888888899999************* PP

         UAA 165 ldavlglvqeklykkygkhsk.e...alfyshllslplflllqgellsavkflsesedvallslpsklfylllnvltqyvcikgVlilisefgaltvtl 259
                 l+++  ++   l++  + h k +   +lfy   l++ ++ll +++  +    l+  +d a  ++   + ++ + + ++++     ++ ++ ++a t+t+
  KOO23904.1 235 LSSLRPVIAMILMSGTETHPKlDpavVLFYDCSLAFWFMLLYWTAGPEREPSLAYLADPATRWVG--VHVITVGSSMAFMYNLATYYYVNLTSAVTATI 331
                 ***9888888888887777766433389************9999998877777766666642322..23344444445555556667777788888888 PP

         UAA 260 vltlRKfvslllSillFknpl.tlqhlvgtllVflglllysyv 301
                   ++ K+  +++   + +n +  + ++ g++lV++++++y+y+
  KOO23904.1 332 GANAVKITLIIVA-AMQDNDVqDVYTWAGVALVIISIAAYAYL 373
                 8888886555555.55555551688999**********99986 PP

>> EamA  EamA-like transporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.2   4.7   1.8e-07    0.0011      30     134 ..      92     200 ..      84     202 .. 0.86
   2 !    9.8   9.8   0.00014      0.86       9     133 ..     231     368 ..     223     372 .. 0.70

  Alignments for each domain:
  == domain 1  score: 19.2 bits;  conditional E-value: 1.8e-07
        EamA  30 pltltfvrfliagillliiallkegkl....aklslkdwllllllgllgtvlafllffyalkktsasnaslitslePvftlilsvlllgekltlkqllg 124
                 p++++++ +++++++  ++a +   +     +   l  ++  l+  + +t++  +l +++++ +s      i ++ P+ t++l +++ g +++   ++ 
  KOO23904.1  92 PVFYSMWHMFFSALAAYLLACVAMPNGkdlpSFAQLWRYKHGLIPIACCTAISTWLNNWSFTLVSLFLNQAIRAMGPLPTVVLEYIIIGRNPGAPIVAC 190
                 889999**9988888766644444444334777777778888888899*************************************************** PP

        EamA 125 ivlillGvll 134
                 +++i +G +l
  KOO23904.1 191 VGFICIGSIL 200
                 *******987 PP

  == domain 2  score: 9.8 bits;  conditional E-value: 0.00014
        EamA   9 laalfwaiyfvlskillrkv......spltltfvrfliagilllii.allkegkl....aklslkd.....wlll.lllgllgtvlaf.llffyalkkt 89 
                 ++ l++++ +v++ il++ +      +p  ++f+ + +a+ ++l++ ++  e+ +          +     w  + +++   ++++++ l+ +y ++ t
  KOO23904.1 231 ISILLSSLRPVIAMILMSGTethpklDPAVVLFYDCSLAFWFMLLYwTAGPEREPslayL-----AdpatrWVGVhVITVGSSMAFMYnLATYYYVNLT 324
                 444444444455544433333333338889999999888877755423333333344332.....1345558888677777888888878999999999 PP

        EamA  90 sasnaslitslePvftlilsvlllgekltlkqllgivlillGvl 133
                 sa +a++  + + +  +i ++   +    +++++g++l++++++
  KOO23904.1 325 SAVTATIGANAVKITLIIVAAMQDNDVQDVYTWAGVALVIISIA 368
                 999999999999999999999999*****************997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (425 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       748  (0.0417201); expected 358.6 (0.02)
Passed bias filter:                      382  (0.0213063); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.53u 0.23s 00:00:00.76 Elapsed: 00:00:00.40
# Mc/sec: 3155.29
//
Query:       KOO23905.1  [L=187]
Description: dead-box ATP-dependent RNA helicase 20-like protein, partial [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    4.3e-28   97.9   0.0    5.2e-28   97.6   0.0    1.1  1  Helicase_C     Helicase conserved C-terminal domain
     0.0066   16.6   0.0     0.0091   16.2   0.0    1.1  1  Helicase_C_2   Helicase C-terminal domain
  ------ inclusion threshold ------
      0.044   13.0   0.0      0.055   12.7   0.0    1.1  1  ERCC3_RAD25_C  ERCC3/RAD25/XPB C-terminal helicase


Domain annotation for each model (and alignments):
>> Helicase_C  Helicase conserved C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   97.6   0.0   8.6e-32   5.2e-28      18     111 .]       4      99 ..       1      99 [. 0.93

  Alignments for each domain:
  == domain 1  score: 97.6 bits;  conditional E-value: 8.6e-32
                 EEEEEESSHHHHHHHHHHHHHTTSTEEEESTTSTHHHHHHHHHHHHTTSSSEEEESGGGTSSSTSTTESEEEESSSS..SSHHHHHHHHTTSSSTT CS
  Helicase_C  18 kilifvntidrlekvklllekkgikvavlhgelpqnereeileqfnkgesdvLiatdvaerGidipkvnlVinfdlp..rnvtsyiqriGRtgRag 111
                 +++if+ +++ +e v+  l+++g+ + +lhg+ +q+er+ +l+qf++g+  vLiatdva+rG+d+++v+ V+nfd+p  ++ ++y++riGR+gRag
  KOO23905.1   4 RVIIFCASKRGCEAVRTELRRRGLGAEALHGDKSQQERDWVLQQFRQGSAPVLIATDVASRGLDVKDVRAVVNFDAPaqDKAEDYVHRIGRAGRAG 99 
                 79********998866666799*******************************************************75559************97 PP

>> Helicase_C_2  Helicase C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.0   1.5e-06    0.0091      11      88 ..       4      74 ..       2      90 .. 0.88

  Alignments for each domain:
  == domain 1  score: 16.2 bits;  conditional E-value: 1.5e-06
  Helicase_C_2 11 gvlvffpSyklleevverlkeeleskkieifveekeesrekvleeykekkkkgaillavcrGklsEGidfsddllrav 88
                  +v++f+ S +  e v+ +l++++   ++   ++ ++++r+ vl+++++  ++  +l+a+     s G+d++d   rav
    KOO23905.1  4 RVIIFCASKRGCEAVRTELRRRGLGAEALHGDK-SQQERDWVLQQFRQ--GSAPVLIATD--VASRGLDVKDV--RAV 74
                  799********************9777766666.999***********..*********9..99******974..444 PP

>> ERCC3_RAD25_C  ERCC3/RAD25/XPB C-terminal helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   9.2e-06     0.055      80     151 ..      27      98 ..       3     108 .. 0.75

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 9.2e-06
  ERCC3_RAD25_C  80 lkkpyiyGetseaerlkilqkfkknpkvntiflskvgDtsiDlPeanvliqisshfgsrrqe.aqrlGriLra 151
                    l  + ++G+ s++er  +lq+f++ +   +++   v+   +D+ +   ++  ++ +  +  +   r+Gr  ra
     KOO23905.1  27 LGAEALHGDKSQQERDWVLQQFRQGS-APVLIATDVASRGLDVKDVRAVVNFDAPAQDKAEDyVHRIGRAGRA 98 
                    455789*****************985.56777899********999999999887766654426788887776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (187 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       354  (0.0197445); expected 358.6 (0.02)
Passed bias filter:                      286  (0.0159518); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.38u 0.23s 00:00:00.61 Elapsed: 00:00:00.38
# Mc/sec: 1466.06
//
Query:       KOO23906.1  [L=229]
Description: hypothetical protein Ctob_001925 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
     0.0022   17.3   1.0     0.0022   17.3   1.0    1.6  2  CitMHS    Citrate transporter


Domain annotation for each model (and alignments):
>> CitMHS  Citrate transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.1      0.07   1.3e+03     267     282 ..      13      27 ..       5      43 .. 0.52
   2 !   17.3   1.0   1.2e-07    0.0022      95     176 ..      64     206 ..      53     227 .. 0.76

  Alignments for each domain:
  == domain 1  score: -1.7 bits;  conditional E-value: 0.07
                 xxxxxxxxxxxxxxxx RF
      CitMHS 267 nvavaalmapialgma 282
                 ++++ +lm+ +a++ +
  KOO23906.1  13 TDTL-LLMMTMAFANL 27 
                 4433.34444444444 PP

  == domain 2  score: 17.3 bits;  conditional E-value: 1.2e-07
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..............................................xxxxxx RF
      CitMHS  95 vlimipivlslakrlkklppllliplalaaniggaltpiGtpttraa..............................................arpgls 147
                  li  p++  l +r  k+p +++++++++ n+ g+lt+   p+                                                   ++ ++
  KOO23906.1  64 SLISSPLTSLLLRRFRKRPDVYMMVAVVGVNVVGLLTLSSYPLPQ-TvavmlfgpsrtllwscyfhflaqpnrfaratkgrmlgysnliiavmSDLPPY 161
                 789999999********************************9443.25889999999999999999999999999998888888888888877777777 PP

                 xxxxxx................xxxxxxxxxxxxxxxxxxxxxxx RF
      CitMHS 148 lpnlll................lalllvgllplvllfmfgvalal 176
                 l+n+ +                +all  +++p++l ++++  +a+
  KOO23906.1 162 LLNWCVtrfngltlatvhlllqVALLGCLAFPVYLHACHHEEVAA 206
                 777777888888666665555555555555777777766655554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (229 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       421  (0.0234815); expected 358.6 (0.02)
Passed bias filter:                      294  (0.016398); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.27s 00:00:00.66 Elapsed: 00:00:00.41
# Mc/sec: 1695.20
//
Query:       KOO23907.1  [L=435]
Description: zinc metalloproteinase nas-14, partial [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    4.9e-29  101.3   0.2      7e-29  100.8   0.2    1.1  1  Astacin        Astacin (Peptidase family M12A)
     0.0011   17.7   0.1     0.0016   17.2   0.1    1.2  1  Metallopep     Putative peptidase family
     0.0084   15.1   0.0      0.015   14.3   0.0    1.3  1  Peptidase_M66  Peptidase M66
  ------ inclusion threshold ------
      0.011   16.3   0.1       0.02   15.4   0.1    1.4  1  Reprolysin_3   Metallo-peptidase family M12B Reprolysin-like
      0.016   15.2   3.6      0.016   15.2   3.6    2.0  2  PRIMA1         Proline-rich membrane anchor 1
      0.017   15.0   0.3      0.029   14.2   0.3    1.5  1  Peptidase_M10  Matrixin
      0.068   13.3   0.4       0.11   12.6   0.4    1.3  1  Reprolysin_5   Metallo-peptidase family M12
      0.072   12.7   0.1       0.15   11.7   0.1    1.5  1  Reprolysin_4   Metallo-peptidase family M12B Reprolysin-like


Domain annotation for each model (and alignments):
>> Astacin  Astacin (Peptidase family M12A)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  100.8   0.2   3.1e-32     7e-29       6     190 ..     217     404 ..     214     405 .. 0.88

  Alignments for each domain:
  == domain 1  score: 100.8 bits;  conditional E-value: 3.1e-32
                 CEEEEEE-TTS-HHHHHHHHHHHHHHHH...HSS-EEEE-S.....SSSCEEEEE--SSCEE-SS--SSEEEEEE-CCC-SHHHHHHHHHHHHTB--GG CS
     Astacin   6 akipYeldesleekeraaikkaleeyek...ktCirfkere.a...seenylkvtkaegClssvgraggkqevslgkgCeklgiivHElmHalGffHeq 97 
                 +++pY +d ++++ +++a+ +a++++     + Ci f+e + +   +++ ++kv++++ C    g  +++ ++   ++   lg i+HE++Ha+G+ He+
  KOO23907.1 217 TTVPYCFDPNINDGRKQAVYQAINKIAAdglSDCIGFQEVTcTnttQKKIRFKVVDTNSCHAACGAVETEVNLGWCDSVVYLGSIIHEIGHAVGLGHEH 315
                 469***********************9733357******99756667777889999*********999888877778999******************* PP

                 GSTTGGGTEEE-GGGB-TT-GGGC----CCCEE-TT----TT-TTS--TTTTBSSTTS-SEEESSGCCTTTTT--S.S--HHHHHHHHHHTT-S CS
     Astacin  98 sRtdrdeyvsinkeniekgqeenfekvdskevdslgvpYdygSimhYakkafskngalpTivpkkeelqktiGqre.klsevDikkinklYkCk 190
                 +R+dr++y+++n +ni+++ +++++        ++++ Y+y+S+mhY +    ++   +T +  + + +  iG+ +  +  +D+++i+ +Y+C+
  KOO23907.1 316 KRPDRNQYITVNFTNITPDWVSQYSIDP---DMNMAQSYNYNSLMHYPSGCTGTSP--STCQITQPAGTPPIGRSSgGFDANDMEQIRDIYECR 404
                 **********************998766...4567899*********999888777..78888889999****97636999************7 PP

>> Metallopep  Putative peptidase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   0.1     7e-07    0.0016     308     333 ..     291     316 ..     256     343 .. 0.78

  Alignments for each domain:
  == domain 1  score: 17.2 bits;  conditional E-value: 7e-07
  Metallopep 308 wealaitlGAflHEiGHllglpHqed 333
                 w    + lG+++HEiGH+ gl+H ++
  KOO23907.1 291 WCDSVVYLGSIIHEIGHAVGLGHEHK 316
                 5556788****************986 PP

>> Peptidase_M66  Peptidase M66
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.3   0.0   6.5e-06     0.015     192     223 ..     297     326 ..     289     336 .. 0.78

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 6.5e-06
  Peptidase_M66 192 ltgefiHEqGHalGLpHylageaaskgsypya 223
                    + g  iHE GHa+GL+H    ++ ++ +y+ +
     KOO23907.1 297 YLGSIIHEIGHAVGLGH--EHKRPDRNQYITV 326
                    67889************..5556666777755 PP

>> Reprolysin_3  Metallo-peptidase family M12B Reprolysin-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.4   0.1   9.1e-06      0.02      78     124 .]     250     314 ..     224     314 .. 0.77

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 9.1e-06
  Reprolysin_3  78 vgGlAyvgsvcnsskk..agvnsgssvlgkvga................dtvaHEiGHnfganHt 124
                     G+  v++  + +kk  ++v++ +s   ++ga                  ++HEiGH  g+ H+
    KOO23907.1 250 CIGFQEVTCTNTTQKKirFKVVDTNSCHAACGAvetevnlgwcdsvvylGSIIHEIGHAVGLGHE 314
                   455555555555555566899999988899999999999999999999999*************5 PP

>> PRIMA1  Proline-rich membrane anchor 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.0       3.4   7.7e+03     106     120 ..     181     195 ..     172     204 .. 0.65
   2 ?   15.2   3.6   7.3e-06     0.016      13      43 ..     393     423 ..     384     432 .. 0.83

  Alignments for each domain:
  == domain 1  score: -3.1 bits;  conditional E-value: 3.4
      PRIMA1 106 ssrkkkkavdvnnav 120
                 s++kk+k+v++++av
  KOO23907.1 181 SASKKEKSVKTKAAV 195
                 455566666666655 PP

  == domain 2  score: 15.2 bits;  conditional E-value: 7.3e-06
      PRIMA1  13 vtescqeacqcrrypplpppppppppprlls 43 
                   e+++ + +cr++pp ppp+p pp p + s
  KOO23907.1 393 DMEQIRDIYECRTRPPGPPPSPSPPLPCVNS 423
                 468899999****************997655 PP

>> Peptidase_M10  Matrixin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   0.3   1.3e-05     0.029     113     129 ..     301     317 ..      43     329 .. 0.63

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 1.3e-05
                    HHHHHHHHTTBESXSST CS
                    xxxxxxxxxxxxxxxxx RF
  Peptidase_M10 113 aaHEiGHalGLeHssdk 129
                     +HEiGHa+GL H +++
     KOO23907.1 301 IIHEIGHAVGLGHEHKR 317
                    58***********8765 PP

>> Reprolysin_5  Metallo-peptidase family M12
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.4   4.9e-05      0.11     119     162 ..     260     317 ..     232     369 .. 0.67

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 4.9e-05
  Reprolysin_5 119 sgsagsvstrveks..............nsvvvstatevqvvaHElGHnfGavHDcds 162
                   ++++  +  +v  +              n + +++   + ++ HE+GH+ G  H ++ 
    KOO23907.1 260 NTTQKKIRFKVVDTnschaacgavetevNLGWCDSVVYLGSIIHEIGHAVGLGHEHKR 317
                   554444444433335555566666666677778888889999************7764 PP

>> Reprolysin_4  Metallo-peptidase family M12B Reprolysin-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.1   6.5e-05      0.15     139     191 ..     301     375 ..     269     384 .. 0.75

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 6.5e-05
  Reprolysin_4 139 fAHEiGHtfGaaHdls......................degeglsskteegsgqtIMsyaseasqeafapisirl 191
                   + HEiGH  G+ H+ +                      ++  +     +  + +++M y s   ++  + ++i+ 
    KOO23907.1 301 IIHEIGHAVGLGHEHKrpdrnqyitvnftnitpdwvsqYSIDPDMNMAQSYNYNSLMHYPSGCTGTSPSTCQITQ 375
                   67***********99988888777777775555555444444444444888899999999988888888888875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (435 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       381  (0.0212505); expected 358.6 (0.02)
Passed bias filter:                      305  (0.0170115); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.51u 0.26s 00:00:00.77 Elapsed: 00:00:00.43
# Mc/sec: 3046.41
//
Query:       KOO23908.1  [L=969]
Description: hypothetical protein Ctob_001930 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.56    9.2   5.0      0.065   12.3   0.2    1.8  2  ArAE_2_N  Putative ER transporter, 6TM, N-terminal


Domain annotation for each model (and alignments):
>> ArAE_2_N  Putative ER transporter, 6TM, N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   1.0      0.13   2.3e+03     436     470 ..     200     233 ..     186     234 .. 0.77
   2 ?   12.3   0.2   3.6e-06     0.065     356     470 ..     504     624 ..     474     625 .. 0.87

  Alignments for each domain:
  == domain 1  score: -2.7 bits;  conditional E-value: 0.13
    ArAE_2_N 436 kqkeaaaeleeaketlekaledfakakrlkllass 470
                 + k  +a +e++ ++l++a+ d++++++++l +++
  KOO23908.1 200 E-KAYNAAVEKYSRRLNDATLDLLAEEMEELSEKT 233
                 3.3578999********************998775 PP

  == domain 2  score: 12.3 bits;  conditional E-value: 3.6e-06
    ArAE_2_N 356 revgayetkksiellear.....daqrsltlsdldeviealrelsgeileaveegletivewleaanefRiyslalpwnakkhkek.qkeaaaeleeak 448
                 ++ g+++ +++i++++       +  ++ t + +d+++ + ++  + +le  +e+le i+e  +    +R   ++++  +k + ++   e+ +++++ +
  KOO23908.1 504 SKLGVTNAEHDIRMANSIifgtlSFPSRGTNDLIDAIHAFAHKAATAMLERDQEMLENIAEFAQQQAGQRLGDKFVFIGRKLRAQRpREEMLEQIRKSE 602
                 78899999999999996688877777899*****************************************999998888877776636789******** PP

    ArAE_2_N 449 etlekaledfakakrlkllass 470
                 e  e + e   +++r+k+++++
  KOO23908.1 603 EVTEHTDEHVYETQRIKVVDWT 624
                 ****999999999999999885 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (969 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       933  (0.0520386); expected 358.6 (0.02)
Passed bias filter:                      456  (0.0254337); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.70u 0.27s 00:00:00.97 Elapsed: 00:00:00.42
# Mc/sec: 6898.12
//
Query:       KOO23909.1  [L=635]
Description: subfamily member 9 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.3e-17   61.5   0.5    1.2e-16   60.6   0.5    1.5  1  DnaJ      DnaJ domain
    1.3e-06   28.9   0.0    3.6e-06   27.5   0.0    1.7  1  Ank_2     Ankyrin repeats (3 copies)
    1.4e-05   25.1   0.0      0.019   15.4   0.0    3.9  3  Ank_3     Ankyrin repeat
    2.2e-05   24.9   0.0    8.2e-05   23.1   0.0    2.0  2  Ank_4     Ankyrin repeats (many copies)
    8.2e-05   22.8   0.0     0.0053   17.1   0.0    2.8  3  Ank_5     Ankyrin repeats (many copies)
  ------ inclusion threshold ------
       0.02   15.3   0.0       0.65   10.5   0.0    3.2  3  Ank       Ankyrin repeat


Domain annotation for each model (and alignments):
>> DnaJ  DnaJ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.6   0.5     4e-20   1.2e-16       1      63 []     528     589 ..     528     589 .. 0.97

  Alignments for each domain:
  == domain 1  score: 60.6 bits;  conditional E-value: 4e-20
                 HHHHHHTSSTTG-HHHHHHHHHHHHHHHSTTTSCCHHHHHHHHHHHHHHHHHHTSHHHHHHHH CS
        DnaJ   1 dyYeiLgvskdasedeIkkaYrklalkyHPDknpkdpeaeekFkeineAyevLsdpekRkqYD 63 
                 ++Y++L  ++ a  +e+kk Yr+++l +HPDkn   ++a+++Fk++++Ay +Lsd+  R++YD
  KOO23909.1 528 THYDVLRTHRAAMPAELKKGYRRMSLLLHPDKN-ARESAARAFKRVSDAYTTLSDAYTRAEYD 589
                 59*******************************.7888************************9 PP

>> Ank_2  Ankyrin repeats (3 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.5   0.0   1.2e-09   3.6e-06       3      72 ..      13      94 ..      11     104 .. 0.75

  Alignments for each domain:
  == domain 1  score: 27.5 bits;  conditional E-value: 1.2e-09
       Ank_2  3 lAakngnlelvklLl.eg...adpnk..ngktaLhyAakngnleivklLleh.....ad.ndgrtpLhyAarsghleivklL 72
                 A+++g+    k Ll ++    d+++  +g ta+hyAa++g + +v++L e      ++  +g tpL++A ++++l +++ L
  KOO23909.1 13 RACQQGQIAEAKALLaAHpsvLDARStsKGYTAMHYAAMGGVVALVEWLSEVgmdvsVEnPEGVTPLQVALEYKRLTVARRL 94
                58888877777888863322344442469************9999*****966555533688*********99999998877 PP

>> Ank_3  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.2   0.0      0.59   1.8e+03       5      23 ..      10      28 ..       7      34 .. 0.80
   2 !   15.4   0.0   6.5e-06     0.019       2      30 ..      42      69 ..      41      70 .. 0.94
   3 ?    4.0   0.0     0.034     1e+02       2      21 ..      75      94 ..      74     101 .. 0.86

  Alignments for each domain:
  == domain 1  score: 0.2 bits;  conditional E-value: 0.59
       Ank_3  5 pLhlAarsgnleivkfLle 23
                ++ +A+ +g ++ +k+Ll 
  KOO23909.1 10 AFLRACQQGQIAEAKALLA 28
                6889*******66999998 PP

  == domain 2  score: 15.4 bits;  conditional E-value: 6.5e-06
       Ank_3  2 GetpLhlAarsgnleivkfLlenkgadvn 30
                G+t++h+Aa+ g +++v++L e  g+dv 
  KOO23909.1 42 GYTAMHYAAMGGVVALVEWLSE-VGMDVS 69
                9*********************.8**996 PP

  == domain 3  score: 4.0 bits;  conditional E-value: 0.034
       Ank_3  2 GetpLhlAarsgnleivkfL 21
                G tpL +A+++ +l++++ L
  KOO23909.1 75 GVTPLQVALEYKRLTVARRL 94
                88************998876 PP

>> Ank_4  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.1   0.0   2.7e-08   8.2e-05       3      54 ..       9      61 ..       7      62 .. 0.92
   2 ?   -2.5   0.0       2.8   8.4e+03      34      48 ..      74      88 ..      65      94 .. 0.64

  Alignments for each domain:
  == domain 1  score: 23.1 bits;  conditional E-value: 2.7e-08
       Ank_4  3 taLhyaaisgrlelvrlLlekgad.inaqdnrsGetalhiAakrgnveilklL 54
                +a+ +a+++g++  ++ Ll+  ++ ++a++ + G ta+h+Aa++g v  +++L
  KOO23909.1  9 KAFLRACQQGQIAEAKALLAAHPSvLDARSTSKGYTAMHYAAMGGVVALVEWL 61
                67889**************887777999999*********************9 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 2.8
       Ank_4 34 sGetalhiAakrgnv 48
                +G t+l+ A+   ++
  KOO23909.1 74 EGVTPLQVALEYKRL 88
                577888888755544 PP

>> Ank_5  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.7   0.0     0.014        41      23      56 .]      14      49 ..      11      49 .. 0.86
   2 !   17.1   0.0   1.8e-06    0.0053       2      56 .]      27      82 ..      26      82 .. 0.90
   3 !   12.2   0.0   5.9e-05      0.18       7      35 ..      66      94 ..      61     103 .. 0.90

  Alignments for each domain:
  == domain 1  score: 4.7 bits;  conditional E-value: 0.014
       Ank_5 23 AakygaadvvrlLl.argadlnltdsrG.ltaldlA 56
                A+ +g    ++ Ll a+++ l+++  +  +ta+++A
  KOO23909.1 14 ACQQGQIAEAKALLaAHPSVLDARSTSKgYTAMHYA 49
                888999999999999999999998877779999998 PP

  == domain 2  score: 17.1 bits;  conditional E-value: 1.8e-06
       Ank_5  2 lehg.padvnrldgggntpLhvAakygaadvvrlLlargadlnltdsrGltaldlA 56
                l++  ++   r+  +g+t++h+Aa +g   +v++L + g+d  + + +G t+l++A
  KOO23909.1 27 LAAHpSVLDARSTSKGYTAMHYAAMGGVVALVEWLSEVGMDVSVENPEGVTPLQVA 82
                555556666688899***************************************98 PP

  == domain 3  score: 12.2 bits;  conditional E-value: 5.9e-05
       Ank_5  7 advnrldgggntpLhvAakygaadvvrlL 35
                +dv  ++++g+tpL vA +y +++v+r+L
  KOO23909.1 66 MDVSVENPEGVTPLQVALEYKRLTVARRL 94
                89999**********************98 PP

>> Ank  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.0   0.00022      0.65       2      20 ..      42      57 ..      41      69 .. 0.87
   2 ?   -0.1   0.0      0.52   1.5e+03       2      13 ..      75      86 ..      74     100 .. 0.77
   3 ?   -0.9   0.0      0.92   2.7e+03       7      29 ..     536     561 ..     536     564 .. 0.67

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00022
                SBBHHHHHHHHTTHHHHHH CS
         Ank  2 GnTPLHlAatngkkriikl 20
                G+T+ H+Aa++g   ++ l
  KOO23909.1 42 GYTAMHYAAMGG---VVAL 57
                9*********99...8874 PP

  == domain 2  score: -0.1 bits;  conditional E-value: 0.52
                SBBHHHHHHHHT CS
         Ank  2 GnTPLHlAatng 13
                G TPL +A  ++
  KOO23909.1 75 GVTPLQVALEYK 86
                99***9987655 PP

  == domain 3  score: -0.9 bits;  conditional E-value: 0.92
                 HHHH....HHTTHHHHHHHHTTTSTTC CS
         Ank   7 HlAa....tngkkriiklLLhGAnlna 29 
                 H+Aa      ++ r  +lLLh  + na
  KOO23909.1 536 HRAAmpaeLKKGYRRMSLLLHP-DKNA 561
                 7777555544558999999964.6666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (635 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       802  (0.044732); expected 358.6 (0.02)
Passed bias filter:                      432  (0.024095); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.60u 0.29s 00:00:00.88 Elapsed: 00:00:00.45
# Mc/sec: 4199.87
//
Query:       KOO23910.1  [L=738]
Description: hypothetical protein Ctob_001934 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.3e-09   37.3   2.8      0.072   13.2   0.1    3.9  3  LRR_6        Leucine Rich repeat
     0.0027   17.4   0.6       0.89    9.4   0.1    3.2  2  LRR_8        Leucine rich repeat
  ------ inclusion threshold ------
      0.029   13.3   1.1      0.056   12.3   1.1    1.4  1  DUF677       Protein of unknown function (DUF677)
      0.036   14.5   0.0          4    8.0   0.0    2.7  2  LRR_4        Leucine Rich repeats (2 copies)


Domain annotation for each model (and alignments):
>> LRR_6  Leucine Rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.7   0.0   2.3e-05      0.11       5      24 .]     569     588 ..     566     588 .. 0.95
   2 !   13.2   0.1   1.6e-05     0.072       4      23 ..     598     617 ..     595     618 .. 0.92
   3 !    9.5   0.1   0.00023       1.1       3      22 ..     673     692 ..     671     694 .. 0.86

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 2.3e-05
       LRR_6   5 LteLdLsgNdIgDeGaeaLa 24 
                 L+ L Ls N IgD Ga aLa
  KOO23910.1 569 LRRLVLSANAIGDRGAVALA 588
                 99*****************8 PP

  == domain 2  score: 13.2 bits;  conditional E-value: 1.6e-05
       LRR_6   4 hLteLdLsgNdIgDeGaeaL 23 
                 +L+ L L +N IgD+G+ aL
  KOO23910.1 598 SLEVLALDHNAIGDAGGAAL 617
                 89****************99 PP

  == domain 3  score: 9.5 bits;  conditional E-value: 0.00023
       LRR_6   3 thLteLdLsgNdIgDeGaea 22 
                 + L++L Ls+N+++D+ +  
  KOO23910.1 673 PRLQTLALSHNELSDASVLG 692
                 679************98865 PP

>> LRR_8  Leucine rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.0   0.1    0.0091        41      24      37 ..     596     609 ..     567     620 .. 0.69
   2 !    9.4   0.1    0.0002      0.89      22      38 ..     670     686 ..     669     693 .. 0.75

  Alignments for each domain:
  == domain 1  score: 4.0 bits;  conditional E-value: 0.0091
                 -TT--EEE--SS-- CS
       LRR_8  24 lsnLkvLdLsnNll 37 
                 l +L+vL L +N +
  KOO23910.1 596 LASLEVLALDHNAI 609
                 67777777777776 PP

  == domain 2  score: 9.4 bits;  conditional E-value: 0.0002
                 TT-TT--EEE--SS--- CS
       LRR_8  22 kglsnLkvLdLsnNllt 38 
                 +gl++L++L Ls+N+l+
  KOO23910.1 670 HGLPRLQTLALSHNELS 686
                 46777788888887776 PP

>> DUF677  Protein of unknown function (DUF677)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   1.1   1.2e-05     0.056     228     287 ..      51     110 ..      35     146 .. 0.88

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 1.2e-05
      DUF677 228 asawkkyeealkrqkeivssmekgievakkdvenisilverleseiksilktvefAveke 287
                  ++++k ee  kr++ +++s+ +++ev  +++ +++++v +le e+ ++  + e A e++
  KOO23910.1  51 RHMLEKAEEDQKRERAAAESLASRLEVTLRELGEMRSKVFQLEGEVVNLKAANEAASESR 110
                 5799********************************************877777776655 PP

>> LRR_4  Leucine Rich repeats (2 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.5   0.0     0.023     1e+02       3      37 ..     569     610 ..     568     615 .. 0.71
   2 ?    8.0   0.0    0.0009         4       1      20 [.     673     692 ..     669     723 .. 0.69

  Alignments for each domain:
  == domain 1  score: 3.5 bits;  conditional E-value: 0.023
                 --EEE--SS---E-S-..HH......H-TT--EEE-.-S---- CS
       LRR_4   3 LevLdLsnNqltdipl..le......klpnLkeLdLsgNnlit 37 
                 L+ L Ls N + d +   l+       l +L++L L +N  i+
  KOO23910.1 569 LRRLVLSANAIGDRGAvaLAtalatpTLASLEVLALDHN-AIG 610
                 889999977988877766335555766999999999666.555 PP

  == domain 2  score: 8.0 bits;  conditional E-value: 0.0009
                 SS--EEE--SS---E-S-HH CS
       LRR_4   1 pnLevLdLsnNqltdiplle 20 
                 p+L++L Ls+N l+d + l+
  KOO23910.1 673 PRLQTLALSHNELSDASVLG 692
                 68999999999999988866 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (738 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1096  (0.06113); expected 358.6 (0.02)
Passed bias filter:                      440  (0.0245412); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.73u 0.28s 00:00:01.01 Elapsed: 00:00:00.47
# Mc/sec: 4747.86
//
Query:       KOO23911.1  [L=403]
Description: hypothetical protein Ctob_001926 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.9e-19   68.6   0.0    1.3e-18   67.5   0.0    1.5  2  DUF179    Uncharacterized ACR, COG1678
     0.0013   18.6   0.0     0.0028   17.5   0.0    1.5  1  Chromo    Chromo (CHRromatin Organisation MOdifier) domain


Domain annotation for each model (and alignments):
>> DUF179  Uncharacterized ACR, COG1678
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.5   0.0   1.4e-22   1.3e-18       5     157 ..      37     185 ..      33     187 .. 0.89
   2 ?   -3.3   0.0      0.87   7.8e+03     108     118 ..     350     365 ..     319     366 .. 0.66

  Alignments for each domain:
  == domain 1  score: 67.5 bits;  conditional E-value: 1.4e-22
                 TTTSTTEEEEEEEEETTEEEEEESSSEEEEEHHHHHHHGCTSSSST-CHHHSEEEES-SEEEEEEEEEEES..SSSEEECSTTEEEE-SSHHHHHH.CS CS
      DUF179   5 dpnFersVvlllehdeegalGlvlNrpleltlkelleelleleaepateklssvylGGPveqdrlfvlhsleelessleisdglylttsldileal.ag 102
                 d++F +s vl+leh  +g+ G+ lN+ + +t+++l+++   +  +      + v+lGG   +d+++++h   el++++e+ +g+y ++   +l+a+ +g
  KOO23911.1  37 DHYFLESLVLILEHGPDGTKGVLLNHETPWTVEDLAPDAKMAPFAA-----NAVFLGGDAGRDTITMVHGEFELPGAVEVGQGVYTGGVDAALRAVtEG 130
                 899************99********************944444443.....45*****************669***********************666 PP

                 TTSCSSEEEEEEEEEECTTHHHHHHHTTSEEEEE-.HHHHHCTS.TSSHHHHHHHH CS
      DUF179 103 kagpeklrvflGyagWeagQLeeEieegaWlvvpassedllfet.ppeelWeealr 157
                    p+++ +f+  ++W ++ L   i +g++ v++ s+  +lf++  ++++W+e+ +
  KOO23911.1 131 ALPPDRFKFFYKSVEWLPNALPVAITSGTFQVIELSPG-FLFGQsGQRSMWAEVRE 185
                 99*********************************888.6666439999***9866 PP

  == domain 2  score: -3.3 bits;  conditional E-value: 0.87
                 S.....EEEEEEEEEE CS
      DUF179 108 k.....lrvflGyagW 118
                       +rvf G + W
  KOO23911.1 350 IaallaYRVFKGNSQW 365
                 0444448999999999 PP

>> Chromo  Chromo (CHRromatin Organisation MOdifier) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5   0.0   3.1e-07    0.0028       5      41 ..     352     386 ..     348     398 .. 0.85

  Alignments for each domain:
  == domain 1  score: 17.5 bits;  conditional E-value: 3.1e-07
                 EEEEEEEETTEECEEEEEEETTSTGGGTEEEEGGGCS CS
      Chromo   5 rIidhrtdkdgleleYlVKWkglpysentWEpeenle 41 
                  +++ r+ k++   +  V+W+g+  + +tWE++  l+
  KOO23911.1 352 ALLAYRVFKGNS--QWRVRWRGYGAEGDTWESIHVLD 386
                 678889999999..******************98776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (403 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       787  (0.0438954); expected 358.6 (0.02)
Passed bias filter:                      443  (0.0247086); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.51u 0.25s 00:00:00.76 Elapsed: 00:00:00.42
# Mc/sec: 2884.58
//
Query:       KOO23912.1  [L=363]
Description: hypothetical protein Ctob_001927 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    6.5e-22   78.3   0.0    7.7e-22   78.0   0.0    1.1  1  RabGAP-TBC  Rab-GTPase-TBC domain


Domain annotation for each model (and alignments):
>> RabGAP-TBC  Rab-GTPase-TBC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   78.0   0.0   4.3e-26   7.7e-22       7     182 ..      86     276 ..      80     308 .. 0.83

  Alignments for each domain:
  == domain 1  score: 78.0 bits;  conditional E-value: 4.3e-26
  RabGAP-TBC   7 vWklllgyepevkrlkksekkqeksekeksklekseeske.lsqIkkDvprtfp......esesfknkqgqnqLeriLkaysiynpevgYcqGmndiva 98 
                  W  l+g+          e++q +++ + +     +++++ +sq++ D+ rt        ++  ++ ++ + +L+r+L+a++  +p +gY+qGm di+a
  KOO23912.1  86 HWLALAGVD---------EERQLQQSLYANLCAAPPPPSDvISQVEVDLTRTDLrlyeceHDPPEQAPERRMALRRVLLAFARLDPSTGYVQGMGDIAA 175
                 577777773.........23444444444444444445556************999999777999999******************************* PP

  RabGAP-TBC  99 pll..................lvsldeeeaFwcfvsLlekyklrdlytsslpglkrklkvleellkkkdpklykhlkeegldlelfaikwfltlflref 179
                   l                  +++  e  aFw + +   +  l+ ++ +++  + + +++l++ l    p l  hl+e+g++l + a +w+ltlf r +
  KOO23912.1 176 RALlssaaldgmharanggglITERAEAAAFWWLRHVT-QSLLPGFFAPGMAAVWEEVRLLRRALMLLQPHLLAHLDELGCELACVAPSWYLTLFQRIL 273
                 99988888888888888888555557777*********.9*******************************************************9998 PP

  RabGAP-TBC 180 ple 182
                 p +
  KOO23912.1 274 PRS 276
                 865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (363 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       305  (0.0170115); expected 358.6 (0.02)
Passed bias filter:                      219  (0.0122148); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.26s 00:00:00.70 Elapsed: 00:00:00.42
# Mc/sec: 2615.74
//
Query:       KOO23913.1  [L=552]
Description: cysteine proteinase rd21a [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.5e-56  191.2   0.8    3.5e-56  190.7   0.8    1.1  1  Peptidase_C1     Papain family cysteine protease
    9.1e-09   35.6   0.1    1.9e-08   34.6   0.1    1.5  1  Inhibitor_I29    Cathepsin propeptide inhibitor domain (I29)
    1.1e-05   24.4   0.1    0.00038   19.4   0.0    2.1  2  Peptidase_C1_2   Peptidase C1-like family
  ------ inclusion threshold ------
      0.084   12.1   2.1       0.14   11.3   2.1    1.2  1  Proton_antipo_M  Proton-conducting membrane transporter


Domain annotation for each model (and alignments):
>> Peptidase_C1  Papain family cysteine protease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  190.7   0.8   7.7e-60   3.5e-56       4     212 ..      76     284 ..      74     290 .. 0.93

  Alignments for each domain:
  == domain 1  score: 190.7 bits;  conditional E-value: 7.7e-60
                   CEETTTTTTGSG---B-TSSBTHHHHHHHHHHHHHHHHHHSSS---B-HHHHHHHSTTTSTGGGBB-HHHHHHHHHHTEBEBTTTS--SSSCS...S CS
  Peptidase_C1   4 svDwrekggavtpvkdqgsCGsCWafsavgaledrlaiktkkklvslSeqelvdCskeenegCnGGlmenafeyikkggivtekdypYkakeg...g 97 
                   +vDw e g  v++vkdqg+CG+CWaf+ vga+e+++ai   + l+slSeqe v+C+k e++ C GG  e+a  + + + +++e+d pY++ ++   g
    KOO23913.1  76 DVDWAEAG-FVERVKDQGRCGACWAFAVVGAIESAFAIGG-NPLTSLSEQEFVSCDK-EEQACAGGSIERATAWSVLHPLCDEADWPYTSGHTvmpG 169
                   79****75.9******************************.69*************8.89*****************************88888999 PP

                   S-CGC.GGGSEEBEESEEEEEESSBHHHHHHHHHHHSSEEEEEECCSHHHHTEESSEESSTSCETSS-EEEEEEEEEEEET...TEEEEEEE-SBTT CS
  Peptidase_C1  98 kCkkk.kkkekvakikgygkvkenseealkkalakngPvsvaidaseedfqlYksGvyketecsktelnhavlivGygven...gkkyWivkNsWgt 190
                   +C  +  ++ k +++  y+ +  + e+a+++a+a+ +Pv++ai a +++fq+Yk+G+y++ +c + +++ha+l+vG+g++    + +yW +kNsWgt
    KOO23913.1 170 ECPGSlPCSPK-VSVAAYKGTWGD-EKAFEAAVAR-QPVAAAIAAGSKAFQFYKKGIYDDASCGT-AVDHAILLVGFGTDVaspTPDYWRLKNSWGT 262
                   9*999777666.999***999996.*********9.***************************96.9************99888999********** PP

                   TSTBTTEEEEESSSSTGGGTTS CS
  Peptidase_C1 191 dwgekGYiriargknnecgies 212
                   +wgekG++++argkn+ cg  +
    KOO23913.1 263 SWGEKGFMQLARGKNHCCGSRK 284
                   ***************8888665 PP

>> Inhibitor_I29  Cathepsin propeptide inhibitor domain (I29)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.6   0.1   4.3e-12   1.9e-08      23      58 .]       5      39 ..       2      39 .. 0.96

  Alignments for each domain:
  == domain 1  score: 34.6 bits;  conditional E-value: 4.3e-12
  Inhibitor_I29 23 enFkeNlrqiqehNanknvtftlglNkfsDlsheEF 58
                   e+F+ N r+i+ehN   nv+ftlg N +sDl+h EF
     KOO23913.1  5 EVFEANDRMIEEHN-ARNVSFTLGHNAYSDLTHAEF 39
                   89************.********************9 PP

>> Peptidase_C1_2  Peptidase C1-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    2.7   0.0    0.0097        44      56      77 ..      86     107 ..      79     117 .. 0.86
   2 !   19.4   0.0   8.5e-08   0.00038     358     396 ..     232     271 ..     226     275 .. 0.88

  Alignments for each domain:
  == domain 1  score: 2.7 bits;  conditional E-value: 0.0097
                     -S--B--BSSTHHHHHHHHHHH CS
  Peptidase_C1_2  56 devtnqkqsGRCWlFaalnvlR 77 
                     ++v +q + G CW Fa + ++ 
      KOO23913.1  86 ERVKDQGRCGACWAFAVVGAIE 107
                     57999***********988775 PP

  == domain 2  score: 19.4 bits;  conditional E-value: 8.5e-08
                     ---EEEEEEEEEE-TT.SSEEEEEEE-SBTTTSTBTTEEE CS
  Peptidase_C1_2 358 lmtHamvltgvdvddd.gkvtkwkvEnsWGedsGekGyfv 396
                     +++Ha++l+g+  d    ++  w++ nsWG   GekG++ 
      KOO23913.1 232 AVDHAILLVGFGTDVAsPTPDYWRLKNSWGTSWGEKGFMQ 271
                     689*******9998765899*****************985 PP

>> Proton_antipo_M  Proton-conducting membrane transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   2.1   3.1e-05      0.14      87     163 ..     361     442 ..     342     448 .. 0.88

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 3.1e-05
  Proton_antipo_M  87 lllvgllvKsaqvplhlWlpdayveaPtp...vsallAatlvkagvlllirllllla..vssneisqlllilaiismllgsl 163
                       l +g++  +a++    W+p a  +aP++   ++allA++++  +   l+  +ll++   + + +++ l++la+ s++lg  
       KOO23913.1 361 PLAAGFVNSAAMAEHGDWVPSALLGAPVAlalGTALLASLASLCARTRLAEQHLLYEepAALEPWASSLFFLALSSAVLGVP 442
                      5788999999999999***********8644479***********************99888899999999******99965 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (552 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       326  (0.0181828); expected 358.6 (0.02)
Passed bias filter:                      246  (0.0137208); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.49u 0.24s 00:00:00.73 Elapsed: 00:00:00.40
# Mc/sec: 4180.70
//
Query:       KOO23914.1  [L=270]
Description: hypothetical protein Ctob_007595 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.5e-05   23.1   0.1     0.0001   21.9   0.1    1.6  1  SAP       SAP domain


Domain annotation for each model (and alignments):
>> SAP  SAP domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.9   0.1   5.8e-09    0.0001       1      33 [.     165     197 ..     165     197 .. 0.95

  Alignments for each domain:
  == domain 1  score: 21.9 bits;  conditional E-value: 5.8e-09
                 HTT--HHHHHHHHHHTT--TTS-HHHHHHHHHH CS
         SAP   1 lskltVaeLKeeLkkrGLptsGkKaeLieRLke 33 
                 +s ++V  L+ +L+k+GL t G+K +Li RL+e
  KOO23914.1 165 YSRMRVEGLRWKLRKLGLTTDGTKPVLIGRLIE 197
                 899*************************99986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (270 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       310  (0.0172904); expected 358.6 (0.02)
Passed bias filter:                      248  (0.0138323); expected 358.6 (0.02)
Passed Vit filter:                        11  (0.000613531); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.23s 00:00:00.67 Elapsed: 00:00:00.41
# Mc/sec: 1972.14
//
Query:       KOO23915.1  [L=1807]
Description: sodium channel protein type 2 subunit alpha [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
   6.2e-194  641.3  61.7    3.9e-60  203.1   5.5    4.5  4  Ion_trans    Ion transport protein
    0.00026   20.7   0.0    0.00074   19.2   0.0    1.8  1  GPHH         Voltage-dependent L-type calcium channel, IQ-ass
  ------ inclusion threshold ------
       0.45   11.0   1.6          1    9.8   0.1    2.1  2  DUF4598      Domain of unknown function (DUF4598)


Domain annotation for each model (and alignments):
>> Ion_trans  Ion transport protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  203.1   5.5   6.5e-64   3.9e-60       3     242 ..      89     447 ..      87     450 .. 0.92
   2 !  168.6  21.3   2.2e-53   1.3e-49       2     239 ..     487     769 ..     486     772 .. 0.90
   3 !  168.3   1.4   2.7e-53   1.6e-49       1     243 [.     885    1248 ..     885    1250 .. 0.93
   4 !  118.9  10.2   3.4e-38     2e-34       3     242 ..    1297    1625 ..    1295    1628 .. 0.90

  Alignments for each domain:
  == domain 1  score: 203.1 bits;  conditional E-value: 6.5e-64
                 HHHHHHHHHHHHHHHHHHCCCSSSS............................................HHHHC..HHHHHHHHHHHHHHHHHHHHHHH CS
   Ion_trans   3 vfelfilllillncvflaletyfpe............................................delek..tileilelvftaiftlemllkil 55 
                 +f+  +l li lnc+++ l+ ++                                                     ++ +i+++vf+ +f++em++k+l
  KOO23915.1  89 WFDRCVLALIGLNCLTMVLFASPLVasvlanddgvdyrdieqksawvarhwtfellkplrdqgncglgdR---IpcSFSQIVDFVFLLFFAIEMVIKML 184
                 99*****************888777**********************************98777776633...144*********************** PP

                 HHTH.HHHHHHCHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGGGGHHHCHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT CS
   Ion_trans  56 algl.likkrYlrdpwnilDflvvlpsllslvlseesllllsvlrlfrvlrllklisrleglrtlvtalirsvkdllnvlllllvvlfifaligvqlfk 153
                 algl l+k  Ylr+ wn+lDf+vv++++l+ ++  + l+++s +rl++ +r+l+ ++r++glr+lv++++++++++lnv+++l++vl+if+l+g+ +f 
  KOO23915.1 185 ALGLaLHKNAYLRSGWNWLDFVVVVVGFLEQFSG-GDLPGISTIRLVKTFRPLRSMQRIRGLRVLVQTILEALPQMLNVAIFLVFVLIIFGLFGMAFFS 282
                 *****************************99654.479************************************************************* PP

                 TSCCCC.......................................................................CC.....SCCSTSSSTTTSSSS CS
   Ion_trans 154 gklrek.......................................................................ne.....caktwenpnngntnF 176
                 gklr++                                                                        +      +   +npn+g t+F
  KOO23915.1 283 GKLRHAchacaeydeageclewestgircdaecqwdddirlvkacgslgngtmqkesqarnlrwtyscrpgerclcdDSgealpGCSYLANPNYGITSF 381
                 *********************************************999999999988888888777777765555550056788558899********* PP

                 SSHHHHHHHHHHHHTTSSHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
   Ion_trans 177 dnfftallwlfrlmttegwgdilyatldekskvaliyfvifiilgsflllNlliaviadnfqelte 242
                 d++++a+l+lf+ ++ egw d++y+ +d+ s++ +iyf++++++g+++ +Nl++av  dnf++  +
  KOO23915.1 382 DSILWAMLSLFQAISLEGWIDMTYQLMDGCSMFVFIYFIVLVLIGAIIAMNLFLAVLCDNFDKADS 447
                 *************************************************************99876 PP

  == domain 2  score: 168.6 bits;  conditional E-value: 2.2e-53
                 HHHHHHHHHHHHHHHHHHHCCCSSSS................HHHHC...HHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHCHSHHHHHHHHHHHHH CS
   Ion_trans   2 svfelfilllillncvflaletyfpe................delek...tileilelvftaiftlemllkilalgllikkrYlrdpwnilDflvvlps 81 
                 ++f++fi  +illn+++++l+ ++++                +   +    +l+i++++ t +f+ e++lk++alg    + +lrd +n++D +vv++s
  KOO23915.1 487 KYFDYFIQGCILLNTLLMCLKVAPQPanlvamdihtiprwdyL--PEpyfWFLTIFNIILTLVFVAELVLKMVALGW---RLFLRDSMNLFDAFVVFFS 580
                 69************************9**99999999988541..335679**************************...******************* PP

                 HHHH..HHHH.........HHHHHHHHHHHHGGGGGGHHHCHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCC.......... CS
   Ion_trans  82 llsl..vlse.........esllllsvlrlfrvlrllklisrleglrtlvtalirsvkdllnvlllllvvlfifaligvqlfkgklrek.......... 159
                 +++l  +               l lsvlr+fr++rl+kl++ +++lr ++ +li+s+k++++++llll+v++if l+gv+lf+g + ++          
  KOO23915.1 581 IVELalD--LserfstggaVIPLPLSVLRAFRIFRLFKLVRTIDSLRKIISTLIQSFKEVFYLALLLLLVMLIFILLGVELFGGMYPHSeynytqdnfp 677
                 ****661..344566677778999**********************************************************88888777777665554 PP

                 CC...SCCSTSSSTTTSSSSSSHHHHHHHHHHHHTTSSHHHHHHHHHHHS..........HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
   Ion_trans 160 ne...caktwenpnngntnFdnfftallwlfrlmttegwgdilyatldek..........skvaliyfvifiilgsflllNlliaviadnfqe 239
                 +        we++  +++nFd+f+tall++f+++++e+w++i+ ++  +             +a+iy+vi++i+g++ll+Nl++a+  +nf++
  KOO23915.1 678 GTwdkRMILWEDD-ASRYNFDDFGTALLAIFVVLSGENWNEIMFNNHEATwskdvaavpfIPWAVIYMVILFIVGNLLLFNLFVAILLSNFDD 769
                 1155344445555.8899****************************************9999*****************************85 PP

  == domain 3  score: 168.3 bits;  conditional E-value: 2.7e-53
                  SHHHHHHHHHHHHHHHHHHHCCCSSSSHHHHC.HHHHHHHHHHHHHHHHHHHHHHHHHTH.........HHHHHHCHSHHHHHHHHHHHHHHHHHHH CS
   Ion_trans    1 ssvfelfilllillncvflaletyfpedelek.tileilelvftaiftlemllkilalgl.........likkrYlrdpwnilDflvvlpsllslvl 87  
                  ++vfe ++l+lil+++++l ++ ++   ++   + +e l++vft++ftlem+lk++a+gl            + Y+ + wnilDf++vl+++ls vl
  KOO23915.1  885 HPVFEPVVLVLILVSTLTLVIDMPHLDYKSPLrSGIEKLNTVFTVLFTLEMALKMVACGLyksktppkyTLHMPYFASSWNILDFFIVLVTILSDVL 981 
                  789******************777777444448********************************998877888*******************8877 PP

                  HHHHHHHHHHHHHHGGGGGGHHHCHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCC......................... CS
   Ion_trans   88 seesllllsvlrlfrvlrllklisrleglrtlvtalirsvkdllnvlllllvvlfifaligvqlfkgklrek......................... 159 
                  +  + + ++ lr+fr +r+l+l+sr e l+++  +l+ +++++  ++ +++++++if+++g +lf+gk+ ++                         
  KOO23915.1  982 DPAEQPWINQLRTFRAIRPLRLVSRYEALKVTCSTLLAAIPAMASLATVAILFFLIFGILGTELFGGKFGYCydplyadlefggritpglgmgphah 1078
                  7789********************************************************************************************* PP

                  .........................................CC......SCCSTSSSTTTSSSSSSHHHHHHHHHHHHTTSSHHHHHHHHHHHS... CS
   Ion_trans  160 .........................................ne......caktwenpnngntnFdnfftallwlfrlmttegwgdilyatldek... 206 
                                                           ++      +  +w +p  ++ nFdn++++++ lf++   egw+d+++  +d     
  KOO23915.1 1079 qgantdyhecmalprynltrrttdgillmdmadiepgtlsdGSkwlnfiEFPQWVYP--SFGNFDNIGYSFILLFEVSALEGWPDVMHWAMDVDsne 1173
                  ****99999999999999999888888888887776666551167777877889999..889*********************************** PP

                  ......................................HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
   Ion_trans  207 ......................................skvaliyfvifiilgsflllNlliaviadnfqelter 243 
                                                        +  + ++fv++ii+g f+++Nl +++++d+f++++ +
  KOO23915.1 1174 myvqpwridsnpmewmasdtpvpeellpsipshkhttaNIEGGAFFVLWIIFGCFVIVNLTVGIVVDTFSDIKAK 1248
                  *************************************99999*****************************9976 PP

  == domain 4  score: 118.9 bits;  conditional E-value: 3.4e-38
                  HHHHHHHHHHHHHHHHHHCCCSSSS........HHHHCHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHCHSHHHHHHHHHHHHHHHHH...... CS
   Ion_trans    3 vfelfilllillncvflaletyfpe........delektileilelvftaiftlemllkilalgllikkrYlrdpwnilDflvvlpsllsl...... 85  
                   fe+fi+++i++n++f+a++ +f++         +l+ + +++++ vf  i++ emllk+++lg+     Y++d w+++D++ v++s +++      
  KOO23915.1 1297 RFEVFIMVVIMMNMTFMACD-WFEPnpdaqiyiPQLK-HTMKVVDAVFFFIYVAEMLLKWVGLGF---DQYFKDSWCVFDCILVTISAVDFiftwiv 1388
                  59*****************5.5555355555543344.99*************************...*********************99777765 PP

                  .HHHH...HHHHHHHHHHHHGGGGGGHHHCHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCC................... CS
   Ion_trans   86 .vlse...esllllsvlrlfrvlrllklisrleglrtlvtalirsvkdllnvlllllvvlfifaligvqlfkgklrek................... 159 
                   +          + + lrlfrv+r+l++++  ++lr+++ ++  s+++l n+++l+ ++++i  ++ v +f   ++ +                   
  KOO23915.1 1389 vD--GkmpFPAAVARCLRLFRVARILRIVKTAKSLRVIMLTVYLSLPQLYNIMILITLIILITDMLLVGFF---WFVNytpgnfdtsdhldwtvtqs 1480
                  40..15566799***********************************************************...87778899999889999998888 PP

                  ...............CCSCCSTSSSTTTSSSSSSHHHHHHHHHHHHTTSSHHHHHHHHHHHS................................... CS
   Ion_trans  160 ...............necaktwenpnngntnFdnfftallwlfrlmttegwgdilyatldek................................... 206 
                                 n   ++w ++ +++ nF  f+t  l+l+r+ t+e ++ ++++ ++                                     
  KOO23915.1 1481 yrkgeryfqddwhldNTPGTNWGSALDRHANFGFFWTGALTLVRSSTGESFNLVMHDLYGWWwginrltccpecgpminstsplkqesiripstgae 1577
                  8877666666665554477899999999999999*************************999*********************************** PP

                  ............HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
   Ion_trans  207 ............skvaliyfvifiilgsflllNlliaviadnfqelte 242 
                              +  +++++++f +l+++++l+++++vi +nf+++ +
  KOO23915.1 1578 iwrqipmtscgaTEPGMLIYLVFQVLMAYVVLSIMVGVILENFANVGS 1625
                  *******************************************99876 PP

>> GPHH  Voltage-dependent L-type calcium channel, IQ-associated
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.2   0.0   1.2e-07   0.00074       2      36 ..    1638    1672 ..    1637    1678 .. 0.94

  Alignments for each domain:
  == domain 1  score: 19.2 bits;  conditional E-value: 1.2e-07
        GPHH    2 FvrvWaeyDPeAtgrikvqdmyellrrlspPLGfG 36  
                  F +vW +yDP+ t  +  ++++ +l++l+ PLG+ 
  KOO23915.1 1638 FREVWLKYDPKGTFIVPSHNLLAMLQQLREPLGIQ 1672
                  899******************************85 PP

>> DUF4598  Domain of unknown function (DUF4598)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   0.1   0.00017         1      43      94 ..     428     478 ..     425     482 .. 0.80
   2 ?   -0.8   0.2      0.34   2.1e+03      62      81 ..     775     794 ..     756     811 .. 0.39

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.00017
     DUF4598  43 yIEMnLgLGvleekrdeesesdsdsssddedsesdekeesakkekesnvldk 94 
                  I MnL L vl ++ d+++++d++  sd+e+se+  +++   + k sn++++
  KOO23915.1 428 IIAMNLFLAVLCDNFDKADSDDTNPMSDEESSEEVLARQL-MQMKHSNIIRQ 478
                 589***************9999999999999998876554.44567777665 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 0.34
     DUF4598  62 esdsdsssddedsesdekee 81 
                 ++++d+++ +e +e+d  ++
  KOO23915.1 775 DAEEDEDARNEAMEDDIGDS 794
                 22222222222222222111 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1807 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       876  (0.0488594); expected 358.6 (0.02)
Passed bias filter:                      432  (0.024095); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 1.07u 0.29s 00:00:01.36 Elapsed: 00:00:00.46
# Mc/sec: 11730.54
//
Query:       KOO23916.1  [L=483]
Description: tubulin polyglutamylase ttll4 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    5.2e-30  104.6   0.0    3.8e-24   85.3   0.0    2.1  2  TTL             Tubulin-tyrosine ligase family
    0.00021   20.7   0.0       0.28   10.4   0.0    2.2  2  ATPgrasp_ST     Sugar-transfer associated ATP-grasp
     0.0024   17.9   0.0        2.8    8.0   0.0    2.4  2  ATP-grasp_3     ATP-grasp domain
     0.0037   16.6   0.0        1.2    8.3   0.0    2.8  2  ATPgrasp_YheCD  YheC/D like ATP-grasp


Domain annotation for each model (and alignments):
>> TTL  Tubulin-tyrosine ligase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   85.3   0.0   8.5e-28   3.8e-24      66     173 ..      20     130 ..      11     137 .. 0.90
   2 !   17.0   0.0   5.6e-07    0.0025     236     269 ..     226     259 ..     221     267 .. 0.89

  Alignments for each domain:
  == domain 1  score: 85.3 bits;  conditional E-value: 8.5e-28
                 -B----SS---XX------BSSTHHHHHH......HH..SSS-EEEEB--SSB--BTTEEEEEEEEEEE-..TT-XXXXXXXXXXXXXXXXXX..XXXX CS
         TTL  66 sntwIvKpsasarGkgirvfnkledikki......vsqsqkeplvvqkYierPLLidgrKFDlRlyvlvtsvnpLrvYvYkegllRfasvkYspsvsdl 158
                 s  wIvKp+ +++G+gir+ n+ +++ +        s s++ plvvq Y+ +P L +grK D R yvlvts +p+r+Y+++eg++R++s  Ysp     
  KOO23916.1  20 SPGWIVKPAHGSQGQGIRLYNSSAELAARlgstlfLSESKRVPLVVQPYLRSPRLHHGRKWDVRTYVLVTSATPMRLYLFSEGIVRYSSSVYSP---GS 115
                 456************************879*****9*********************************************************5...44 PP

                 XXXXXXXXXXXXXXX CS
         TTL 159 ddlevHLTNysiqkk 173
                 ++  + LTN+ + kk
  KOO23916.1 116 THAGAVLTNTYVGKK 130
                 555555777777666 PP

  == domain 2  score: 17.0 bits;  conditional E-value: 5.6e-07
                 XXXXXXXXXXXXXXXXXXXXXXXXXX..XXXXXX CS
         TTL 236 cfelyGvDilidenlkpwLlEvNasPdlksttkl 269
                 c+ l+GvD++ de     ++EvN +Pdl+ +t+ 
  KOO23916.1 226 CYHLFGVDLIADESGGMHVIEVNVEPDLTLSTEG 259
                 9***************************988865 PP

>> ATPgrasp_ST  Sugar-transfer associated ATP-grasp
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.9   0.0   0.00035       1.6      61      81 ..      21      41 ..      16      62 .. 0.79
   2 !   10.4   0.0   6.3e-05      0.28     240     279 ..     225     262 ..     221     268 .. 0.82

  Alignments for each domain:
  == domain 1  score: 7.9 bits;  conditional E-value: 0.00035
  ATPgrasp_ST 61 egvviKpakgsgGkGilvite 81
                 +g ++Kpa+gs G+Gi+  ++
   KOO23916.1 21 PGWIVKPAHGSQGQGIRLYNS 41
                 679*************99866 PP

  == domain 2  score: 10.4 bits;  conditional E-value: 6.3e-05
  ATPgrasp_ST 240 pglgylGwDivldeekgplllElNarpglaivqiangegl 279
                  p+  ++G+D+  de++g  ++E+N +p+l++    +ge  
   KOO23916.1 225 PCYHLFGVDLIADESGGMHVIEVNVEPDLTL--STEGECA 262
                  577899***********************98..3455555 PP

>> ATP-grasp_3  ATP-grasp domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.0   0.0   0.00062       2.8      28      68 ..      17      67 ..       3      74 .. 0.71
   2 !    7.4   0.0    0.0009         4     136     155 ..     228     248 ..     221     254 .. 0.87

  Alignments for each domain:
  == domain 1  score: 8.0 bits;  conditional E-value: 0.00062
                 S--SSSEEEEESS-------B--SS--TTE.................EEEE CS
  ATP-grasp_3 28 eeeekklvvKprdGaggesvrvveekeeaeaaieeve..........lvqe 68
                 +e    ++vKp+ G+ g+++r+ +   e+ a + ++           +vq 
   KOO23916.1 17 HEPSPGWIVKPAHGSQGQGIRLYNSSAELAARLGSTLflseskrvplVVQP 67
                 4456679****************9999888777665555555555555555 PP

  == domain 2  score: 7.4 bits;  conditional E-value: 0.0009
                  EEEEEEEEESS..SEEEEEEE CS
  ATP-grasp_3 136 GyvGvDlvlkd.eepyviEvN 155
                   ++GvDl+  + ++ +viEvN
   KOO23916.1 228 HLFGVDLIADEsGGMHVIEVN 248
                  578******9999******** PP

>> ATPgrasp_YheCD  YheC/D like ATP-grasp
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.8   0.1    0.0032        14      52      65 ..      24      37 ..      19      87 .. 0.85
   2 !    8.3   0.0   0.00027       1.2     207     234 ..     230     257 ..     223     266 .. 0.86

  Alignments for each domain:
  == domain 1  score: 4.8 bits;  conditional E-value: 0.0032
  ATPgrasp_YheCD 52 ylKpanGskGkgil 65
                    ++Kpa+Gs+G+gi 
      KOO23916.1 24 IVKPAHGSQGQGIR 37
                    79**********95 PP

  == domain 2  score: 8.3 bits;  conditional E-value: 0.00027
  ATPgrasp_YheCD 207 lGlDlgidkegkvWllEvNskpgrsifk 234
                     +G+Dl  d++g + ++EvN +p  +  +
      KOO23916.1 230 FGVDLIADESGGMHVIEVNVEPDLTLST 257
                     8********************9876655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (483 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       370  (0.020637); expected 358.6 (0.02)
Passed bias filter:                      317  (0.0176809); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.49u 0.24s 00:00:00.73 Elapsed: 00:00:00.40
# Mc/sec: 3595.81
//
Query:       KOO23917.1  [L=253]
Description: hypothetical protein Ctob_007599 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (253 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       285  (0.015896); expected 358.6 (0.02)
Passed bias filter:                      218  (0.0121591); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.43u 0.26s 00:00:00.69 Elapsed: 00:00:00.43
# Mc/sec: 1759.95
//
Query:       KOO23918.1  [L=571]
Description: glycine d-amino acid oxidases-like protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (571 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       269  (0.0150036); expected 358.6 (0.02)
Passed bias filter:                      167  (0.00931452); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.49u 0.22s 00:00:00.71 Elapsed: 00:00:00.38
# Mc/sec: 4470.40
//
Query:       KOO23919.1  [L=448]
Description: hypothetical protein Ctob_007600 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (448 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1603  (0.0894082); expected 358.6 (0.02)
Passed bias filter:                      379  (0.0211389); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                        14  (0.000780858); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.66u 0.27s 00:00:00.93 Elapsed: 00:00:00.42
# Mc/sec: 3174.89
//
Query:       KOO23920.1  [L=309]
Description: hypothetical protein Ctob_004770 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (309 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       415  (0.0231469); expected 358.6 (0.02)
Passed bias filter:                      275  (0.0153383); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.46u 0.19s 00:00:00.65 Elapsed: 00:00:00.38
# Mc/sec: 2436.75
//
Query:       KOO23921.1  [L=321]
Description: hypothetical protein Ctob_004771 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    0.00012   21.8  34.0       0.06   13.2   4.0    6.3  6  YrhK      YrhK-like protein


Domain annotation for each model (and alignments):
>> YrhK  YrhK-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.1   0.1    0.0023        41      33      52 ..      18      37 ..       2      46 .. 0.74
   2 !    4.7   0.4    0.0016        28      37      49 ..      66      78 ..      57      79 .. 0.82
   3 !    6.9   2.8   0.00031       5.5      15      57 ..      68     109 ..      67     113 .. 0.68
   4 !   13.2   4.0   3.3e-06      0.06      10      50 ..     119     158 ..     107     166 .. 0.83
   5 !   10.0   1.5   3.4e-05      0.61       5      51 ..     176     234 ..     175     237 .. 0.90
   6 ?    1.4   0.4     0.017     3e+02      40      54 ..     289     303 ..     261     309 .. 0.88

  Alignments for each domain:
  == domain 1  score: 4.1 bits;  conditional E-value: 0.0023
        YrhK 33 kwqiagvwlFliGSilflir 52
                 w  +g  ++l+GS+ ++++
  KOO23921.1 18 PWNGLGMDCWLAGSMCLTVS 37
                68889999******999886 PP

  == domain 2  score: 4.7 bits;  conditional E-value: 0.0016
        YrhK 37 agvwlFliGSilf 49
                 g+wlF +G++++
  KOO23921.1 66 TGAWLFYVGCVMY 78
                79********985 PP

  == domain 3  score: 6.9 bits;  conditional E-value: 0.00031
        YrhK  15 sllFlvGSilflpnse.fwkwqiagvwlFliGSilflirpvirl 57 
                 + lF vG +++   s  +++ +i  + ++liG++lf+++p+  +
  KOO23921.1  68 AWLFYVGCVMYD--SRmIDDFAIQINHVWLIGCLLFTAGPLYLI 109
                 667778777766..44356555555556***********98655 PP

  == domain 4  score: 13.2 bits;  conditional E-value: 3.3e-06
        YrhK  10 ndiigsllFlvGSilflpnsefwkwq.iagvwlFliGSilfl 50 
                   ++g++lF++G i+ +  +++w w+  +g+  +l+G++ f+
  KOO23921.1 119 IAFLGGMLFILGTIVEY--FTTWRWEpLLGASIYLVGCLGFT 158
                 4699**********999..6677665278**********996 PP

  == domain 5  score: 10.0 bits;  conditional E-value: 3.4e-05
        YrhK   5 aislandiigsllFlvGSilflpnse.fw...........kwqiagvwlFliGSilfli 51 
                 ++++a+ +ig l+++vG i flp ++  w              ++g+ +F+ GSi  ++
  KOO23921.1 176 WLNAAMSVIGDLMYTVGCIGFLPIVKhEWgnenslgwggqFFSRLGIECFIQGSIVIGV 234
                 7899999***************99998889*****9998888899*********98776 PP

  == domain 6  score: 1.4 bits;  conditional E-value: 0.017
        YrhK  40 wlFliGSilflirpv 54 
                 ++F +G++++++ p+
  KOO23921.1 289 IFFMLGCMMLTAAPM 303
                 58********99986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (321 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       644  (0.0359195); expected 358.6 (0.02)
Passed bias filter:                      317  (0.0176809); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.21s 00:00:00.63 Elapsed: 00:00:00.37
# Mc/sec: 2626.81
//
Query:       KOO23922.1  [L=1310]
Description: sodium channel protein type 9 subunit alpha [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
   5.1e-193  638.3  65.5    4.8e-56  189.7   6.7    4.0  4  Ion_trans    Ion transport protein
      1e-05   25.2   0.0    2.4e-05   24.0   0.0    1.6  1  GPHH         Voltage-dependent L-type calcium channel, IQ-ass
    1.9e-05   23.5   4.6    1.9e-05   23.5   4.6    9.5 11  PKD_channel  Polycystin cation channel


Domain annotation for each model (and alignments):
>> Ion_trans  Ion transport protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  159.8   9.6   1.1e-50   6.5e-47      20     240 ..       2     264 ..       1     266 [. 0.92
   2 !  146.0  11.4   1.8e-46   1.1e-42       3     242 ..     309     563 ..     307     565 .. 0.91
   3 !  189.7   6.7     8e-60   4.8e-56       1     243 [.     618     885 ..     618     887 .. 0.92
   4 !  161.7  13.9   2.9e-51   1.7e-47       3     243 ..     935    1187 ..     933    1188 .. 0.93

  Alignments for each domain:
  == domain 1  score: 159.8 bits;  conditional E-value: 1.1e-50
                 HCCCSSSSHHHHC.HHHHHHHHHHHHHHHHHHHHHHHHHTH.HHHHHHCHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGGGGHHHCHSHHH CS
   Ion_trans  20 aletyfpedelek.tileilelvftaiftlemllkilalgl.likkrYlrdpwnilDflvvlpsllslvlseesllllsvlrlfrvlrllklisrlegl 116
                 a e++ +ed + k  ++  le++f++++t+eml+k+la+g+  +k  Yl+dpw+ilDf+vv+++++ + ++  +l++++ lr++r +r+l++++ ++gl
  KOO23922.1   2 AWESPMDEDGTWKaGVIALLEVIFLGVYTVEMLVKMLAYGIiGSKSAYLHDPWCILDFTVVSCAWAPILMTGVELPNVNSLRALRAFRALRAMKIIPGL 100
                 667777777777789999***********************777888*******************99888899************************* PP

                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCC................................CC.......SCCSTSSSTTTSSSS CS
   Ion_trans 117 rtlvtalirsvkdllnvlllllvvlfifaligvqlfkgklrek................................ne.......caktwenpnngntnF 176
                 r++v  +++++++l+nv++l+++v+++f++ig++lf+g+l+++                                ++       ca+ +  p ng  ++
  KOO23922.1 101 RVIVEGIMDVIPKLGNVVMLFIFVFVVFGIIGMELFQGTLHYRcalegfahaktkrgfdeaefdtevacnpdrdvSDfcevgqtCAYFEGMPFNGMMSY 199
                 ***************************************************999999999888888877776665005555667*************** PP

                 SSHHHHHHHHHHHHTTSSHHHHHHHHHHHS.HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
   Ion_trans 177 dnfftallwlfrlmttegwgdilyatldek.skvaliyfvifiilgsflllNlliaviadnfqel 240
                 d++++a ++l+++ t + w+  + a +d+  s + ++y++i+ii+++ ++ Nl++av  + f +l
  KOO23922.1 200 DSVLMASITLMQTTTWDTWEISMFALMDYTgSAWVVLYYLIVIIIAACFVKNLFLAVLFEEFTQL 264
                 ***********************************************************999875 PP

  == domain 2  score: 146.0 bits;  conditional E-value: 1.8e-46
                 HHHHHHHHHHHHHHHHHHCCCSSSSHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHCHSHHHHHHHHHHHHHHHHH......HHHH...... CS
   Ion_trans   3 vfelfilllillncvflaletyfpedelektileilelvftaiftlemllkilalgllikkrYlrdpwnilDflvvlpsllsl......vlse...... 89 
                 +++  ++ l+lln+v++ + +y ++de+    le++ l++t++f+lem +k+l+lg+     Y++d wn+lD ++vl+sl+++      +         
  KOO23922.1 309 ILANSSIALVLLNMVLMSMPYYGMSDEYA-ASLEFAGLCITCLFALEMGVKLLGLGC---SGYWSDNWNVLDGTIVLLSLFEIlvtevlT--Ifadgsv 401
                 55667899*****************9999.***************************...*********************996555550..1555566 PP

                 HHHHHHHHHHHHGGGGGGHHHCHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCC.....CC.....SCCSTSSSTTTSSSSSS CS
   Ion_trans  90 esllllsvlrlfrvlrllklisrleglrtlvtalirsvkdllnvlllllvvlfifaligvqlfkgklrek.....ne.....caktwenpnngntnFdn 178
                  +l+ l++lrl+r++r+l+l+++++gl  +v++li +++++  ++l+++++++if ++g+q+f+g + e+     +      c + + +++  + nFd 
  KOO23922.1 402 PQLSFLRMLRLLRIARALRLMRSWQGLYKIVRTLISVIPKIASLALITFLFMVIFVIAGMQFFGGIFTEEygyseVPcredqCPNPDLEERPHFCNFDY 500
                 799*****************************************************************997766500555679999999999999**** PP

                 HHHHHHHHHHHHTTSSHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
   Ion_trans 179 fftallwlfrlmttegwgdilyatldekskvaliyfvifiilgsflllNlliaviadnfqelte 242
                 ff  ll++f l t+e w d   a  +  +   l+yf+ ++++gsfl++N++i+++ ++f e  e
  KOO23922.1 501 FFPGLLSVFILFTGE-WVDSSLAAASIYGPKVLFYFLPCMCVGSFLIMNIFIGMVLSAFGEEDE 563
                 **********99999.****99999999*******************************99876 PP

  == domain 3  score: 189.7 bits;  conditional E-value: 8e-60
                 SHHHHHHHHHHHHHHHHHHHCCCSSSSHHHHC.HHHHHHHHHHHHHHHHHHHHHHHHHTH.HHHHHHCHSHHHHHHHHHHHHHHHHHHHHH...HHHHH CS
   Ion_trans   1 ssvfelfilllillncvflaletyfpedelek.tileilelvftaiftlemllkilalgl.likkrYlrdpwnilDflvvlpsllslvlse...eslll 94 
                 +++fe fill+il ++v la++++    ++ +  +l+  +++ftaif+ emllki+a+g+ + ++ Yl+d wn lDf++v++s++++ ++     +l  
  KOO23922.1 618 HKLFEQFILLVILASSVSLAMDSPLLDPSSATaALLTSTNYIFTAIFVAEMLLKIIAYGFaFTERAYLKDGWNQLDFFIVVISVAVIAAEVldiPALAP 716
                 789******************998888666668****************************************************99444444468999 PP

                 HHHHHHHGGGGGGHHHCHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCCCC............SCCSTSSSTTTSSSSSSHHH CS
   Ion_trans  95 lsvlrlfrvlrllklisrleglrtlvtalirsvkdllnvlllllvvlfifaligvqlfkgklrekne............caktwenpnngntnFdnfft 181
                 l+ lr++r lr+l+li r+e+++ +v++lirs+++++nv+l++l++  +fa++++qlf+g++ e++e            + +twenp    +++d+f++
  KOO23922.1 717 LTSLRVLRALRPLRLIGRIESMKLIVATLIRSIPAVVNVALVFLFIQAVFAILAMQLFAGTFAECSEdhtikgkhhceaKGYTWENP--VGNSYDDFGQ 813
                 *****************************************************************4444555566776788999999..567899**** PP

                 HHHHHHHHHTTSSHHHHHHHHHHHS..........HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
   Ion_trans 182 allwlfrlmttegwgdilyatldek..........skvaliyfvifiilgsflllNlliaviadnfqelter 243
                 a+l+lf   +++ w++ + + + +            + a+++ ++++++g+f+ lNl+++ i+d+f+++  +
  KOO23922.1 814 AMLSLFLQTSGDLWETEMFQAMASTspghapvrndFSPACLFTIAWMFVGAFIALNLFVGAIVDTFNSISAE 885
                 ***********************************9*******************************99876 PP

  == domain 4  score: 161.7 bits;  conditional E-value: 2.9e-51
                  HHHHHHHHHHHHHHHHHHCCCSSSSHHHHC.HHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHCHSHHHHHHHHHHHHHHHHHHHHH......HHH CS
   Ion_trans    3 vfelfilllillncvflaletyfpedelek.tileilelvftaiftlemllkilalgllikkrYlrdpwnilDflvvlpsllslvlse......esl 92  
                   f++fi+ +illn+ ++a+++y  e++     + ++   +ft ++  e+llki+alg+   + Y++  wn++Df+ vl+++++ v ++         
  KOO23922.1  935 NFDIFIITIILLNTGLMACKYYGYEEDAGAyAFYNHGMRFFTTVYYTEFLLKIFALGP---FGYFSVGWNRFDFTLVLFAFVDDVTHDlssllpVPP 1028
                  59*****************988888666559999999*********************...*********************553222344566679 PP

                  HHHHHHHHHGGGGGGHHHCHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCCCCSCCSTSSSTTTSSSSSSHHHHHHHHHHH CS
   Ion_trans   93 lllsvlrlfrvlrllklisrleglrtlvtalirsvkdllnvlllllvvlfifaligvqlfkgklreknecaktwenpnngntnFdnfftallwlfrl 189 
                  +ll+v+rl+r++r+l++++ ++glr lvt++i s++ ++nv+ ll++v+fi+a++g++lf            + +++++++ nF+++++ +l l++ 
  KOO23922.1 1029 FLLRVMRLLRIVRILRILKGVKGLRDLVTTIILSLPPVFNVCSLLALVMFIYAVLGMHLF---------GFLALQENIESHVNFQTVGNGMLLLLQA 1116
                  ************************************************************.........555689999******************* PP

                  HTTSSHHHHHHHHHHHS.................HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
   Ion_trans  190 mttegwgdilyatldek.................skvaliyfvifiilgsflllNlliaviadnfqelter 243 
                   t++gw+ ++++   ++                 s++a+ yf++f ++g+++++Nl+iavi dnf+ l e+
  KOO23922.1 1117 VTGDGWTLLMQDARVREhpdpaltvctaeegncgSFLAVPYFLSFQLIGTLVFMNLMIAVILDNFSTLSEQ 1187
                  *************99999************************************************98876 PP

>> GPHH  Voltage-dependent L-type calcium channel, IQ-associated
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.0   0.0     4e-09   2.4e-05       2      35 ..    1200    1233 ..    1199    1252 .. 0.85

  Alignments for each domain:
  == domain 1  score: 24.0 bits;  conditional E-value: 4e-09
        GPHH    2 FvrvWaeyDPeAtgrikvqdmyellrrlspPLGf 35  
                  F ++Wae DPeA+ +i+   + +l+  + pPLG+
  KOO23922.1 1200 FMEAWAELDPEANNSIQSYLVPQLIGMVAPPLGV 1233
                  99*******************************7 PP

>> PKD_channel  Polycystin cation channel
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.7   0.3     0.013        80     213     261 ..      20      70 ..      11      85 .. 0.66
   2 ?   -1.6   0.4      0.14   8.3e+02     307     358 ..      85     136 ..      78     141 .. 0.74
   3 ?    0.8   3.9     0.026   1.6e+02     384     425 ..     222     263 ..     193     264 .. 0.73
   4 !    5.9   0.0   0.00071       4.2     215     265 ..     341     392 ..     315     405 .. 0.82
   5 !    9.9   4.7   4.5e-05      0.27     303     359 ..     406     465 ..     401     475 .. 0.86
   6 ?   -4.1   1.1      0.77   4.6e+03     398     423 ..     533     558 ..     497     560 .. 0.69
   7 !   11.4   1.4   1.6e-05     0.094     211     262 ..     657     706 ..     640     711 .. 0.69
   8 !    5.9   3.2   0.00074       4.4     306     359 ..     722     775 ..     707     783 .. 0.80
   9 !    7.4   0.3   0.00026       1.5     398     426 .]     854     882 ..     848     882 .. 0.91
  10 ?   -2.0   0.4      0.18   1.1e+03     218     258 ..     972    1013 ..     929    1018 .. 0.70
  11 !   23.5   4.6   3.2e-09   1.9e-05     305     425 ..    1035    1183 ..    1028    1184 .. 0.91

  Alignments for each domain:
  == domain 1  score: 1.7 bits;  conditional E-value: 0.013
                  HHHHHHHHHHHHHHHHHH-------..-------HHHHHHHHHHHHHHHHH CS
  PKD_channel 213 lievvfvvfvlyfvveeilkirker..asylrsvwnlldlaivvlsvvliv 261
                  l+ev+f+ +  + +   +l++   +   +yl++ w +ld+ +v    + i+
   KOO23922.1  20 LLEVIFLGVYTVEMLVKMLAYGIIGskSAYLHDPWCILDFTVVSCAWAPIL 70 
                  44555555544444444444444444379***********99977666555 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 0.14
                  HHHHGGGGG------------------------HHHHHHHHHHHHHHHHHHS CS
  PKD_channel 307 lttlkllkvlrfnktlslltktlaralkdvlgfalvivilflayaqlgvllf 358
                  l   ++l+ +++ + l+++ + +++ ++++  + ++++ +f++++++g+ lf
   KOO23922.1  85 LRAFRALRAMKIIPGLRVIVEGIMDVIPKLGNVVMLFIFVFVVFGIIGMELF 136
                  4556777777777888888888888888888888888888888888776555 PP

  == domain 3  score: 0.8 bits;  conditional E-value: 0.026
                  -HHHHHHH-TTHHHHHHHHHHHHHHHHHHHHHHHHHHT-XXX CS
  PKD_channel 384 qytelesgnrvLGpllllalvflvifillnlflaiindsyee 425
                   ++ +++ +    +l++l+ +++ ++ + nlfla++ +++++
   KOO23922.1 222 MFALMDYTGSAWVVLYYLIVIIIAACFVKNLFLAVLFEEFTQ 263
                  3447788888899************************99975 PP

  == domain 4  score: 5.9 bits;  conditional E-value: 0.00071
                  HHHHHHHHHHHHHHHH-------.-------HHHHHHHHHHHHHHHHHHHHH CS
  PKD_channel 215 evvfvvfvlyfvveeilkirker.asylrsvwnlldlaivvlsvvlivlail 265
                  e++ + + ++f+ e+ +k+   +   y ++ wn+ld  iv+ls++ i++  +
   KOO23922.1 341 EFAGLCITCLFALEMGVKLLGLGcSGYWSDNWNVLDGTIVLLSLFEILVTEV 392
                  6677788999*************999*****************998877654 PP

  == domain 5  score: 9.9 bits;  conditional E-value: 4.5e-05
                  HHHHHHHHGGGGG----------...--------------HHHHHHHHHHHHHHHHHHSS CS
  PKD_channel 303 vlvflttlkllkvlrfnktlsll...tktlaralkdvlgfalvivilflayaqlgvllfG 359
                  +l +l +l++++ lr+++ ++ l    +tl + +++++++al+++++++ ++++g+  fG
   KOO23922.1 406 FLRMLRLLRIARALRLMRSWQGLykiVRTLISVIPKIASLALITFLFMVIFVIAGMQFFG 465
                  6778899999999999999986511168****************************9998 PP

  == domain 6  score: -4.1 bits;  conditional E-value: 0.77
                  HHHHHHHHHHHHHHHHHHHHHHHT-X CS
  PKD_channel 398 llllalvflvifillnlflaiindsy 423
                   ++l  + +  f+++n+f+ ++ +++
   KOO23922.1 533 FYFLPCMCVGSFLIMNIFIGMVLSAF 558
                  35666788889999999999999887 PP

  == domain 7  score: 11.4 bits;  conditional E-value: 1.6e-05
                  HHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHH CS
  PKD_channel 211 lllievvfvvfvlyfvveeilkirkerasylrsvwnlldlaivvlsvvlivl 262
                   +++ ++fv  +l+ +++  +++ +  ++yl++ wn+ld++ivv+sv++i  
   KOO23922.1 657 NYIFTAIFVAEMLLKIIAYGFAFTE--RAYLKDGWNQLDFFIVVISVAVIAA 706
                  3344445555555555555554444..49******************99865 PP

  == domain 8  score: 5.9 bits;  conditional E-value: 0.00074
                  HHHHHGGGGG------------------------HHHHHHHHHHHHHHHHHHSS CS
  PKD_channel 306 flttlkllkvlrfnktlslltktlaralkdvlgfalvivilflayaqlgvllfG 359
                  +l  l+ l+++   + ++l+  tl r++++v+ +alv++ +  ++a+l++ lf 
   KOO23922.1 722 VLRALRPLRLIGRIESMKLIVATLIRSIPAVVNVALVFLFIQAVFAILAMQLFA 775
                  4445555566666789******************************99988775 PP

  == domain 9  score: 7.4 bits;  conditional E-value: 0.00026
                  HHHHHHHHHHHHHHHHHHHHHHHT-XXXX CS
  PKD_channel 398 llllalvflvifillnlflaiindsyeev 426
                  l+ +a +f+ +fi+lnlf+ +i d+++++
   KOO23922.1 854 LFTIAWMFVGAFIALNLFVGAIVDTFNSI 882
                  788999********************975 PP

  == domain 10  score: -2.0 bits;  conditional E-value: 0.18
                   HHHHHHHHHHHHH-------.-------HHHHHHHHHHHHHH CS
  PKD_channel  218 fvvfvlyfvveeilkirker.asylrsvwnlldlaivvlsvv 258 
                   + +f  ++  e++lki   +   y++  wn  d+ +v++  v
   KOO23922.1  972 MRFFTTVYYTEFLLKIFALGpFGYFSVGWNRFDFTLVLFAFV 1013
                   445666777889999999998889999999999999988765 PP

  == domain 11  score: 23.5 bits;  conditional E-value: 3.2e-09
                   HHHHHHGGGGG------------------------HHHHHHHHHHHHHHHHHHSS........SS-STTSSHHHHHHHHHHHHTT---HH...... CS
  PKD_channel  305 vflttlkllkvlrfnktlslltktlaralkdvlgfalvivilflayaqlgvllfG........tqasnfsnlvksiltlfrlilgdfqyt...... 386 
                    +l ++++l++l+ +k l+ l +t+  +l+ v+ +  +++++++ ya+lg+ lfG        + + nf++  +++l l++ + gd ++t      
   KOO23922.1 1035 RLLRIVRILRILKGVKGLRDLVTTIILSLPPVFNVCSLLALVMFIYAVLGMHLFGflalqeniESHVNFQTVGNGMLLLLQAVTGD-GWTllmqda 1129
                   56899*************************************************97776655557899***********8888887.788899999 PP

                   ...............HHHHH-TTHHHHHHHHHHHHHHHHHHHHHHHHHHT-XXX CS
  PKD_channel  387 ...............elesgnrvLGpllllalvflvifillnlflaiindsyee 425 
                                  e  +++ +L + ++l+++++   +++nl++a+i d++++
   KOO23922.1 1130 rvrehpdpaltvctaEEGNCGSFLAVPYFLSFQLIGTLVFMNLMIAVILDNFST 1183
                   *************98777999******************************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1310 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       953  (0.0531541); expected 358.6 (0.02)
Passed bias filter:                      454  (0.0253221); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.86u 0.29s 00:00:01.14 Elapsed: 00:00:00.46
# Mc/sec: 8535.19
//
Query:       KOO23923.1  [L=946]
Description: arginine n-methyltransferase 2 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.8e-60  203.6   0.0    4.5e-60  202.9   0.0    1.3  1  Methyltransf_PK  AdoMet dependent proline di-methyltransferas
    2.8e-16   59.9   0.1      1e-08   35.7   0.1    2.8  2  Ank_2            Ankyrin repeats (3 copies)
    4.3e-16   58.8   0.1    6.2e-07   29.6   0.0    3.9  3  Ank_5            Ankyrin repeats (many copies)
    2.3e-13   50.3   0.5      5e-07   30.1   0.0    3.6  4  Ank_4            Ankyrin repeats (many copies)
    7.2e-13   49.1   0.0    8.6e-06   26.4   0.0    3.4  2  Methyltransf_25  Methyltransferase domain
    1.2e-11   45.1   0.0    6.6e-06   26.7   0.0    2.9  2  Methyltransf_11  Methyltransferase domain
    1.9e-09   37.0   0.1       0.42   11.3   0.0    5.0  4  Ank_3            Ankyrin repeat
      2e-08   34.3   0.5       0.68   10.5   0.0    4.3  4  Ank              Ankyrin repeat
    0.00011   21.6   0.0      0.002   17.5   0.0    2.8  3  Methyltransf_2   O-methyltransferase domain
      0.001   18.9   0.0      0.047   13.5   0.0    2.8  2  Methyltransf_23  Methyltransferase domain
     0.0034   18.1   0.0      0.089   13.5   0.0    2.8  2  Methyltransf_12  Methyltransferase domain
  ------ inclusion threshold ------
      0.013   15.1   0.1       0.45   10.1   0.0    2.6  2  MTS              Methyltransferase small domain
       0.02   15.9   0.4       0.61   11.1   0.0    3.5  3  Methyltransf_24  Methyltransferase domain
      0.042   14.5   0.6       0.34   11.6   0.0    2.6  3  Bin3             Bicoid-interacting protein 3 (Bin3)
        1.7    7.2   3.8        2.5    6.6   3.8    1.2  1  FapA             Flagellar Assembly Protein A


Domain annotation for each model (and alignments):
>> Methyltransf_PK  AdoMet dependent proline di-methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  202.9   0.0   3.8e-63   4.5e-60       2     218 .]     729     944 ..     728     944 .. 0.95

  Alignments for each domain:
  == domain 1  score: 202.9 bits;  conditional E-value: 3.8e-63
  Methyltransf_PK   2 eeevyekaiaYWesveadvdGvLGGygavskiDvkgsrkflkklkkeslpgkrevkvaldcGaGiGrvtknlLlkllskvDlvepvekflekak 95 
                      e+++y  +++YW +v adv G+LGG+g v+ +Dv +s + l++l++    +   + valdcGaGiGrv+ ++Ll+ ++ v+lvep   fl++a+
       KOO23923.1 729 EDQWYAVSEQYWAGVRADVPGMLGGMGFVHPADVAASLALLDTLRATAE-ASLPQGVALDCGAGIGRVAASVLLERFEAVELVEPNGAFLAAAR 821
                      5799*****************************************9955.777889************************************** PP

  Methyltransf_PK  96 eelaeekkkvgkvyvvglqeftPeegr.YdliWiqWcvghLtDedlvaflkrckkalkpnGlivvkenvakeekd.elDkeDssvtrseaklkk 187
                      + l     +v+ +++++lq f+P eg+ Y  +W+qW++  LtD+dlv+fl+rc++al+p+G ++vke va+e +   +D +D s+tr++ ++++
       KOO23923.1 822 NVLPP--ARVRALHECPLQRFVPPEGSlYAAVWVQWVLIFLTDDDLVSFLSRCARALQPGGWVIVKESVAREANGfYVDRSDASITRTDRHFRR 913
                      99988..99*************998765******************************************98664267**************** PP

  Methyltransf_PK 188 lfkkagLklvaeelqkglPkelypvkmyaLk 218
                      lf  agL++ ++e+q glP+ ++pv my L+
       KOO23923.1 914 LFDAAGLRVAHAEMQPGLPRVVFPVCMYGLR 944
                      ****************************985 PP

>> Ank_2  Ankyrin repeats (3 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.7   0.1   8.4e-12     1e-08       5      79 ..      91     178 ..      87     182 .. 0.75
   2 !   25.6   0.0   1.1e-08   1.3e-05      13      72 ..     168     242 ..     168     252 .. 0.82

  Alignments for each domain:
  == domain 1  score: 35.7 bits;  conditional E-value: 8.4e-12
       Ank_2   5 akngnlelvklLlegadpn...k....ngktaLhyAakngnleivklLleh......adndgrtpLhyAarsghleivklLlekgadi 79 
                 a+++n   vk + +  d++   +    +g t L+ Aa+++ +e+v +L+ +      +d++grt+L++Aa +g +  v+ Ll +ga +
  KOO23923.1  91 ASKDNVARVKEICKLPDAKkcvDsenfEGTTSLIKAAMYDRVEMVDALIGAganidhTDQKGRTALMMAAANGAQASVERLLSNGATV 178
                 5554455566665444444333134689************9********744455557799*********************999876 PP

  == domain 2  score: 25.6 bits;  conditional E-value: 1.1e-08
       Ank_2  13 vklLl.egadpn.k..ngktaLhyAakngnleivklLle..h....ad.....ndgrtpLhyAarsghleivklL 72 
                 v+ Ll +ga ++ +  ng+ta ++Aa++g+  ++klL e  h    ad     +dg t+L +A  s++  i+k+L
  KOO23923.1 168 VERLLsNGATVSiCatNGWTAFMFAAEGGSAPVCKLLHEggHvtsvADllvtsKDGLTALELARASSNVGIAKVL 242
                 67788889888873479*************9*******96647788335555799********988888888877 PP

>> Ank_5  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.9   0.0   0.00036      0.43      10      43 ..     113     144 ..     110     146 .. 0.86
   2 !   20.5   0.1   3.5e-07   0.00042       5      38 ..     142     174 ..     138     178 .. 0.88
   3 !   29.6   0.0   5.1e-10   6.2e-07       1      56 []     171     230 ..     171     230 .. 0.98

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00036
       Ank_5  10 nrldgggntpLhvAakygaadvvrlLlargadln 43 
                 + ++ +g+t L+ Aa y + ++v  L+  ga +n
  KOO23923.1 113 DSENFEGTTSLIKAAMYDRVEMVDALI--GAGAN 144
                 67899**********************..55555 PP

  == domain 2  score: 20.5 bits;  conditional E-value: 3.5e-07
       Ank_5   5 gpadvnrldgggntpLhvAakygaadvvrlLlar 38 
                 g a+++++d++g t+L++Aa +ga+  v++Ll +
  KOO23923.1 142 G-ANIDHTDQKGRTALMMAAANGAQASVERLLSN 174
                 4.999***************************44 PP

  == domain 3  score: 29.6 bits;  conditional E-value: 5.1e-10
       Ank_5   1 Llehg.padvnrldgggntpLhvAakygaadvvrlLl.....argadlnltdsrGltaldlA 56 
                 Ll++g  +++++++g+  t++++Aa++g+a+v++lL+        adl +t ++Gltal+lA
  KOO23923.1 171 LLSNGaTVSICATNGW--TAFMFAAEGGSAPVCKLLHegghvTSVADLLVTSKDGLTALELA 230
                 899*************..*********************999999***************99 PP

>> Ank_4  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.1   0.0   4.2e-10     5e-07       2      46 ..     120     163 ..     119     167 .. 0.95
   2 !   16.2   0.0   9.9e-06     0.012      16      55 .]     167     205 ..     163     205 .. 0.85
   3 ?   -1.9   0.0       4.5   5.4e+03      29      53 ..     218     241 ..     212     242 .. 0.64
   4 ?   -2.0   0.0         5   5.9e+03       7      21 ..     599     613 ..     596     628 .. 0.76

  Alignments for each domain:
  == domain 1  score: 30.1 bits;  conditional E-value: 4.2e-10
       Ank_4   2 ltaLhyaaisgrlelvrlLlekgadinaqdnrsGetalhiAakrg 46 
                 +t L +aa++ r+e+v+ L+  ga+i+++ +  G+tal +Aa +g
  KOO23923.1 120 TTSLIKAAMYDRVEMVDALIGAGANIDHT-DQKGRTALMMAAANG 163
                 789**************************.999*********998 PP

  == domain 2  score: 16.2 bits;  conditional E-value: 9.9e-06
       Ank_4  16 lvrlLlekg..adinaqdnrsGetalhiAakrgnveilklLl 55 
                 +v++Ll++g  ++i+a+   +G+ta+ +Aa +g+  + klL+
  KOO23923.1 167 SVERLLSNGatVSICAT---NGWTAFMFAAEGGSAPVCKLLH 205
                 6899****945556666...8******************997 PP

  == domain 3  score: -1.9 bits;  conditional E-value: 4.5
       Ank_4  29 aqdnrsGetalhiAakrgnveilkl 53 
                  + +++G+tal  A   +nv i+k 
  KOO23923.1 218 VT-SKDGLTALELARASSNVGIAKV 241
                 55.7888888866666666666655 PP

  == domain 4  score: -2.0 bits;  conditional E-value: 5
       Ank_4   7 yaaisgrlelvrlLl 21 
                 +aa++ ++ ++r+L+
  KOO23923.1 599 WAAMDADVSAARRLH 613
                 8999********998 PP

>> Methyltransf_25  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.0   0.0   1.5e-06    0.0018       1      97 []     345     442 ..     345     442 .. 0.89
   2 !   26.4   0.0   7.2e-09   8.6e-06       2      97 .]     786     880 ..     785     880 .. 0.81

  Alignments for each domain:
  == domain 1  score: 19.0 bits;  conditional E-value: 1.5e-06
                      EEEET-TTSHHHHHHHCTSTSSEEEEEESSHHHHHHHHHHHHHTTTTEEEEESBCCG.BS...SSTTTEEEEEEEST.GGGSSHHHHHHHHHHH CS
  Methyltransf_25   1 vLdlGcGtGrltlalakrlgkakvtgvDiseemleaareraeeeglnvefvqgdaed.lp...fedgsfDlvvssga.lhhlsdedlekalkei 89 
                      vL +G G G +   +a+r    + t ++  ++ le++r+   +e++ v+++ g  ++ lp    e  +fD ++   +  +h  ++d++++ + +
       KOO23923.1 345 VLNVGFGMGIIDGLIAARA-PRSHTIMEAHPAVLERMRADGWAERPGVRILGGRWQQtLPvllAEGMQFDGIFF-DTyGEH--NSDMAEFHAAL 434
                      89**********9999997.59*********************************664785434777*******.564666..56999****** PP

                      HHHEEEEE CS
  Methyltransf_25  90 arvLkpgG 97 
                       r+L+pgG
       KOO23923.1 435 PRLLRPGG 442
                      *******9 PP

  == domain 2  score: 26.4 bits;  conditional E-value: 7.2e-09
                      EEET-TTSHHHHH.HHCTSTSSEEEEEESSHHHHHHHHHHHHHTTTTEEE.EESBCCG.BSSSTTTEEEEEEESTGGGSSHHHHHHHHHHHHHH CS
  Methyltransf_25   2 LdlGcGtGrltla.lakrlgkakvtgvDiseemleaareraeeeglnvef.vqgdaed.lpfedgsfDlvvssgalhhlsdedlekalkeiarv 92 
                      Ld+G+G Gr+++  l++r+  + v  v+++ ++l+aar+ +    ++v+  +++ +++ +p e + + +v+++ +l +l+d+dl  +l+++ar+
       KOO23923.1 786 LDCGAGIGRVAASvLLERF--EAVELVEPNGAFLAAARNVLP--PARVRAlHECPLQRfVPPEGSLYAAVWVQWVLIFLTDDDLVSFLSRCARA 875
                      9********9987356666..9******************94..3477762667777734556656777777666999**************** PP

                      EEEEE CS
  Methyltransf_25  93 LkpgG 97 
                      L+pgG
       KOO23923.1 876 LQPGG 880
                      ****9 PP

>> Methyltransf_11  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.0   1.8e-05     0.022       1      95 [.     346     445 ..     346     446 .. 0.91
   2 !   26.7   0.0   5.5e-09   6.6e-06       1      96 []     786     884 ..     786     884 .. 0.92

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 1.8e-05
                      EEET-TTSHHHHHHHHTT.SEEEEEES-HHHHHHHHHHCCHHT-EEEETTEECCC.TS..S-TT.-EEEEEEES-CCC-CCHHHHHHHHHHHEE CS
  Methyltransf_11   1 LdvGcGtGrlaealakrg.arvvgvDlskemlklakekaseeglkvefvvadaek.lp..fedn.sfDlvvssevlhhvedpekalkeiaRvLk 89 
                      L+vG G G++   +a r+ ++ + ++  +++l++ ++ +  e++ v+++ ++ ++ lp  ++++ +fD ++     +h  d++++ + + R+L+
       KOO23923.1 346 LNVGFGMGIIDGLIAARApRSHTIMEAHPAVLERMRADGWAERPGVRILGGRWQQtLPvlLAEGmQFDGIFFDTYGEHNSDMAEFHAALPRLLR 439
                      789************888899****************999999999********85587766645***************************** PP

                      EEEEEE CS
  Methyltransf_11  90 pgGllv 95 
                      pgGl  
       KOO23923.1 440 PGGLYS 445
                      ***975 PP

  == domain 2  score: 26.7 bits;  conditional E-value: 5.5e-09
                      EEET-TTSHHHHHHH.HTTSEEEEEES-HHHHHHHHHHCCHHT-EEEETTEECCCT.SS-TT-EEEEEEES-CCC-..CCHHHHHHHHHHHEEE CS
  Methyltransf_11   1 LdvGcGtGrlaeala.krgarvvgvDlskemlklakekaseeglkvefvvadaekl.pfednsfDlvvssevlhhv..edpekalkeiaRvLkp 90 
                      Ld+G+G Gr+a+ +  +r++ v  v+++ ++l++a++  +++++   ++++ ++++ p e + + +v++++vl ++  +d+ ++l+ +aR L+p
       KOO23923.1 786 LDCGAGIGRVAASVLlERFEAVELVEPNGAFLAAARNVLPPARV-RALHECPLQRFvPPEGSLYAAVWVQWVLIFLtdDDLVSFLSRCARALQP 878
                      89*********99997888*****************99999996.3568999999759888999************999*************** PP

                      EEEEEE CS
  Methyltransf_11  91 gGllvi 96 
                      gG++++
       KOO23923.1 879 GGWVIV 884
                      ***986 PP

>> Ank_3  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.3   0.0   0.00035      0.42       4      31 .]     121     147 ..     118     147 .. 0.91
   2 !    9.0   0.0    0.0021       2.5       2      30 ..     152     179 ..     151     180 .. 0.88
   3 !   10.4   0.0   0.00072      0.86       1      23 [.     184     206 ..     184     211 .. 0.89
   4 ?   -2.2   0.0       8.6     1e+04       1      20 [.     222     241 ..     222     245 .. 0.74

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00035
       Ank_3   4 tpLhlAarsgnleivkfLlenkgadvna 31 
                 t L  Aa+++++e+v++L+   ga++++
  KOO23923.1 121 TSLIKAAMYDRVEMVDALIG-AGANIDH 147
                 88999***************.8***985 PP

  == domain 2  score: 9.0 bits;  conditional E-value: 0.0021
       Ank_3   2 GetpLhlAarsgnleivkfLlenkgadvn 30 
                 G+t+L++Aa +g  + v+ Ll  +ga v 
  KOO23923.1 152 GRTALMMAAANGAQASVERLLS-NGATVS 179
                 9***********9977999999.799876 PP

  == domain 3  score: 10.4 bits;  conditional E-value: 0.00072
       Ank_3   1 nGetpLhlAarsgnleivkfLle 23 
                 nG+t++++Aa+ g+ +++k+L e
  KOO23923.1 184 NGWTAFMFAAEGGSAPVCKLLHE 206
                 7***************9999988 PP

  == domain 4  score: -2.2 bits;  conditional E-value: 8.6
       Ank_3   1 nGetpLhlAarsgnleivkf 20 
                 +G t+L lA  s n+ i+k 
  KOO23923.1 222 DGLTALELARASSNVGIAKV 241
                 699***99988888865444 PP

>> Ank  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.5   0.0    0.0025       2.9       2      31 ..     119     149 ..     118     150 .. 0.86
   2 !   10.4   0.0   0.00059       0.7       2      28 ..     152     179 ..     151     183 .. 0.84
   3 !   10.5   0.0   0.00057      0.68       1      24 [.     184     207 ..     184     221 .. 0.76
   4 ?   -2.4   0.0       6.6   7.9e+03       1       9 [.     222     230 ..     222     245 .. 0.62

  Alignments for each domain:
  == domain 1  score: 8.5 bits;  conditional E-value: 0.0025
                 SBBHHHHHHHHTTHHHHHHHH.TTTSTTCBT CS
         Ank   2 GnTPLHlAatngkkriiklLL.hGAnlnald 31 
                 G T L  Aa+++ ++++ +L+  GAn++ +d
  KOO23923.1 119 GTTSLIKAAMYDRVEMVDALIgAGANIDHTD 149
                 566677799************889***9998 PP

  == domain 2  score: 10.4 bits;  conditional E-value: 0.00059
                 SBBHHHHHHHHTTHHHHHHHH.TTTSTT CS
         Ank   2 GnTPLHlAatngkkriiklLL.hGAnln 28 
                 G+T+L++Aa ng    ++ LL +GA + 
  KOO23923.1 152 GRTALMMAAANGAQASVERLLsNGATVS 179
                 9******998888889999**8899765 PP

  == domain 3  score: 10.5 bits;  conditional E-value: 0.00057
                 TSBBHHHHHHHHTTHHHHHHHHT.T CS
         Ank   1 dGnTPLHlAatngkkriiklLLh.G 24 
                 +G+T+ + Aa +g++ ++k LLh G
  KOO23923.1 184 NGWTAFMFAAEGGSAPVCK-LLHeG 207
                 7*********9999*****.55434 PP

  == domain 4  score: -2.4 bits;  conditional E-value: 6.6
                 TSBBHHHHH CS
         Ank   1 dGnTPLHlA 9  
                 dG T+L lA
  KOO23923.1 222 DGLTALELA 230
                 899**9885 PP

>> Methyltransf_2  O-methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.2   0.0      0.31   3.7e+02      66     146 ..     345     425 ..     335     442 .. 0.84
   2 ?   -2.5   0.0       2.2   2.6e+03      58      85 ..     530     555 ..     524     563 .. 0.65
   3 !   17.5   0.0   1.7e-06     0.002     130     172 ..     850     892 ..     785     921 .. 0.84

  Alignments for each domain:
  == domain 1  score: 0.2 bits;  conditional E-value: 0.31
                     EEEET-TTSHHHHHHHHH-TT-EEEEEE-HHHHHHHHHHS-----TTEEEEES-TTTS---..--SEEEEESSGGGS-HHHHH CS
  Methyltransf_2  66 lvDvGGGtGalakaivsayPtikvivfDlpeVveaAkehlsageeervefvgGdffkdslP..eaDaillkrvlhDwsdekcv 146
                     ++ vG G+G +   i++  P  ++i+   p V e+ +     +e+++v+  gG    ++lP   a+ + +  + +D   e+ +
      KOO23923.1 345 VLNVGFGMGIIDGLIAARAPRSHTIMEAHPAVLERMRAD-GWAERPGVRILGGRWQ-QTLPvlLAEGMQFDGIFFDTYGEHNS 425
                     578999****************************99999.8899*********998.99996668888888888887666655 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 2.2
                     S-GGG-SEEEEET-TTSHHHHHHHHH-T CS
  Methyltransf_2  58 fdleglkslvDvGGGtGalakaivsayP 85 
                     +   ++ s+vD G  +Ga+a+ i+ + P
      KOO23923.1 530 SSAANVMSIVDNG--AGAAAQLIALNAP 555
                     5556777788865..5666666665555 PP

  == domain 3  score: 17.5 bits;  conditional E-value: 1.7e-06
                     EEEEESSGGGS-HHHHHHHHHHHHHH--TT-EEEEEE----TT CS
  Methyltransf_2 130 aillkrvlhDwsdekcvklLkrvkkalpagGkvivveavlgad 172
                     a+ +++vl   +d++ v +L r+ +al++gG viv e+v  ++
      KOO23923.1 850 AVWVQWVLIFLTDDDLVSFLSRCARALQPGGWVIVKESVAREA 892
                     577899*******************************997654 PP

>> Methyltransf_23  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.7   0.0      0.17   2.1e+02       8      37 ..     325     402 ..     317     450 .. 0.52
   2 !   13.5   0.0   3.9e-05     0.047      13     162 ..     772     922 ..     762     925 .. 0.65

  Alignments for each domain:
  == domain 1  score: 1.7 bits;  conditional E-value: 0.17
  Methyltransf_23   8 elsdklerllpk..lraggrvLdiGcGtGil..............................................l 37 
                      e+ + l+++ +     +gg vL +G G Gi                                               l
       KOO23923.1 325 EWERPLMEAHAArlCATGGDVLNVGFGMGIIdgliaaraprshtimeahpavlermradgwaerpgvrilggrwqqtL 402
                      566666555433346999***********8734444444444444444444433333333333333333333333333 PP

  == domain 2  score: 13.5 bits;  conditional E-value: 3.9e-05
  Methyltransf_23  13 lerllpklraggrvLdiGcGtGillevlrengf.svtgvDlspeaveiae.........kakkaqkdqfdeqeaaepqg..kfdlIvlrevleh 94 
                      l  +++   ++g  Ld G+G G+++ +   ++f  v++v+++ +  + a+               +++  + + +++ g  +  + v++ ++  
       KOO23923.1 772 LRATAEASLPQGVALDCGAGIGRVAASVLLERFeAVELVEPNGAFLAAARnvlpparvrA----LHECPLQRFVPPE-GslYAAVWVQWVLIFL 860
                      44455556788899********999988888886899****9886666666666532220....2222212222223.2436666677777777 PP

  Methyltransf_23  95 vp.dppellrqiatllkpgGylllseplaslkedrllldwlylvpagrhisffsarslkelleeaGlev 162
                       + d+ + l++ a+ l pgG++++ e+ a+       + +++ v++++ +   + r++++l+ +aGl+v
       KOO23923.1 861 TDdDLVSFLSRCARALQPGGWVIVKESVAR-------EANGFYVDRSDASITRTDRHFRRLFDAAGLRV 922
                      7745**********************9654.......23434444444443444467777777777665 PP

>> Methyltransf_12  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.2   0.0      0.52   6.3e+02      62      98 ..     407     443 ..     387     444 .. 0.84
   2 !   13.5   0.0   7.5e-05     0.089       1      99 []     786     882 ..     786     882 .. 0.88

  Alignments for each domain:
  == domain 1  score: 1.2 bits;  conditional E-value: 0.52
  Methyltransf_12  62 dggssfDlvvasnvlhhlkdirevldnirklLkpgGr 98 
                      ++g +fD ++     +h  d++e+ + + +lL+pgG 
       KOO23923.1 407 AEGMQFDGIFFDTYGEHNSDMAEFHAALPRLLRPGGL 443
                      4556888888888899999*****************6 PP

  == domain 2  score: 13.5 bits;  conditional E-value: 7.5e-05
  Methyltransf_12   1 LeiGcGtGsllralleklpdieyt.gvDispsaiedakeklakrennnnnnvelealdlldldggssfDlvvasnvlhhl..kdirevldnirk 91 
                      L+ G+G G++++ +l +  + e +  v+++ +++++a++ l   + +  +++ l+        +gs + +v++  vl  l  +d+ ++l+++++
       KOO23923.1 786 LDCGAGIGRVAASVLLE--RFEAVeLVEPNGAFLAAARNVLPPARVRALHECPLQRFVPP---EGSLYAAVWVQWVLIFLtdDDLVSFLSRCAR 874
                      899***********999..888888*********99999999999877777777776654...4578999**********9************* PP

  Methyltransf_12  92 lLkpgGrl 99 
                      +L pgG++
       KOO23923.1 875 ALQPGGWV 882
                      ******85 PP

>> MTS  Methyltransferase small domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.9   0.0      0.12   1.5e+02      31      64 ..     341     373 ..     330     393 .. 0.79
   2 ?   10.1   0.0   0.00037      0.45      19      73 ..     764     822 ..     756     834 .. 0.83

  Alignments for each domain:
  == domain 1  score: 1.9 bits;  conditional E-value: 0.12
                 TCSEEEEET-TTSHHHHHHHHHTTC.EEEEEESB CS
         MTS  31 lsgkvlDlGcGaGvlgaalakespeaevtlvdvd 64 
                 + g+vl +G G+G++   +a++ p+   t+++++
  KOO23923.1 341 TGGDVLNVGFGMGIIDGLIAARAPRS-HTIMEAH 373
                 6789***********99999999995.4555555 PP

  == domain 2  score: 10.1 bits;  conditional E-value: 0.00037
                 HHHHHHHHCHCC.....TCSEEEEET-TTSHHHHHHHHHTTC.EEEEEESBHHHHHHHHH CS
         MTS  19 GsklLletlpke.....lsgkvlDlGcGaGvlgaalakespeaevtlvdvdarAlesake 73 
                 +s  Ll+tl ++      +g +lD G+G+G ++a+++ e  e +v+lv+ + + l++a++
  KOO23923.1 764 ASLALLDTLRATaeaslPQGVALDCGAGIGRVAASVLLERFE-AVELVEPNGAFLAAARN 822
                 567799999998777777888*************99998887.59999999888888776 PP

>> Methyltransf_24  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.9   0.3      0.39   4.7e+02      51     100 ..     331     385 ..     150     386 .. 0.71
   2 ?   11.1   0.0   0.00051      0.61      25     100 ..     366     443 ..     346     446 .. 0.79
   3 ?   -1.0   0.0         3   3.6e+03      85     103 ..     866     884 ..     787     886 .. 0.84

  Alignments for each domain:
  == domain 1  score: 1.9 bits;  conditional E-value: 0.39
  Methyltransf_24  51 vrlikadseealasla........agsiDllfiDgghaa.....eavledleallprlapggv 100
                      ++ + a+                 +  + + +iDg  aa     ++ +e+ +a+l+r++ +g+
       KOO23923.1 331 MEAHAAR--------LcatggdvlNVGFGMGIIDGLIAAraprsHTIMEAHPAVLERMRADGW 385
                      2222222........133444444788889999998887555545667777888888888886 PP

  == domain 2  score: 11.1 bits;  conditional E-value: 0.00051
  Methyltransf_24  25 rlvavdhdpgaeeaaalareaglddr..vrlikadseealasla..agsiDllfiDgghaaeavledleallprl.apggv 100
                      + + ++ +p   ++ + +r  g ++r  vr++ ++ +++l+ l     ++D +f+D   ++++ +++++a+lprl +pgg+
       KOO23923.1 366 SHTIMEAHP---AVLERMRADGWAERpgVRILGGRWQQTLPVLLaeGMQFDGIFFDTYGEHNSDMAEFHAALPRLlRPGGL 443
                      455666666...66666666777777889************99977779**********************9965169987 PP

  == domain 3  score: -1.0 bits;  conditional E-value: 3
  Methyltransf_24  85 ledleallprlapggvvlf 103
                        +l  + + l+pgg+v++
       KOO23923.1 866 VSFLSRCARALQPGGWVIV 884
                      5667888999999999986 PP

>> Bin3  Bicoid-interacting protein 3 (Bin3)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.1       2.2   2.7e+03      56      83 ..      50      78 ..      44      98 .. 0.60
   2 ?   -2.4   0.0       6.2   7.4e+03      55     104 ..     281     331 ..     267     332 .. 0.73
   3 ?   11.6   0.0   0.00029      0.34      11      42 ..     854     885 ..     850     911 .. 0.92

  Alignments for each domain:
  == domain 1  score: -1.0 bits;  conditional E-value: 2.2
        Bin3 56 seelkenykelklrpedfeevLle.evgf 83
                +++ +e++k+l  r++++e+ L++ +  +
  KOO23923.1 50 TSKKREKMKKLAYREKELESELKKaKRYL 78
                55666667777777777777666633333 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 6.2
        Bin3  55 lseelkenykelklrpedfeevLleevgfesveeleekeee.skgfkRpil 104
                 ++++ ++   +    +++ +e+L ++v ++ ++ l+e++++ +  ++Rp++
  KOO23923.1 281 VEQHRRAASATAAASEDESAEYLSRSVRYDGERLLDEANDAvMMEWERPLM 331
                 444444555566677778899999999999999999777767778999875 PP

  == domain 3  score: 11.6 bits;  conditional E-value: 0.00029
        Bin3  11 kwihLnkgDeglkrlfkkiyellkpgGvlilE 42 
                 +w+ +   D+ l++++++++++l+pgG +i+ 
  KOO23923.1 854 QWVLIFLTDDDLVSFLSRCARALQPGGWVIVK 885
                 79999***********************9986 PP

>> FapA  Flagellar Assembly Protein A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6   3.8    0.0021       2.5     333     414 ..      14      93 ..       3     115 .. 0.75

  Alignments for each domain:
  == domain 1  score: 6.6 bits;  conditional E-value: 0.0021
        FapA 333 pelkeklkeleeeleeleeeleklkkkikklpklkaekqlesekkeqlkklletkeklkeeleeleeelk..elkeeleskkee 414
                  ++k+ +ke+e ele + + l +l+ + +  p   + ++l+s+k+e++kkl    ++l++el++ ++ l+  el eel++ +++
  KOO23923.1  14 RSTKRPIKEIEAELELCSNALSTLRLE-DADP---KAPALTSKKREKMKKLAYREKELESELKKAKRYLEliELGEELRTAASK 93 
                 455666677777777777777777777.2222...358999***********************99877765889999988333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (946 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       860  (0.047967); expected 358.6 (0.02)
Passed bias filter:                      491  (0.0273858); expected 358.6 (0.02)
Passed Vit filter:                        55  (0.00306766); expected 17.9 (0.001)
Passed Fwd filter:                        15  (0.000836633); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              15  [number of targets reported over threshold]
# CPU time: 0.78u 0.25s 00:00:01.03 Elapsed: 00:00:00.44
# Mc/sec: 6464.72
//
Query:       KOO23924.1  [L=209]
Description: hypothetical protein Ctob_004774 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.7e-12   48.2   6.6      5e-11   43.5   6.6    2.1  1  PLAC8      PLAC8 family
  ------ inclusion threshold ------
       0.24   10.7   3.0        2.4    7.4   0.0    2.5  3  CcmH       Cytochrome C biogenesis protein
        1.5    8.8   5.6       0.45   10.5   1.6    2.0  2  RseC_MucC  Positive regulator of sigma(E), RseC/MucC


Domain annotation for each model (and alignments):
>> PLAC8  PLAC8 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.5   6.6   8.3e-15     5e-11      13      99 .]       2     188 ..       1     188 [. 0.68

  Alignments for each domain:
  == domain 1  score: 43.5 bits;  conditional E-value: 8.3e-15
       PLAC8  13 evcllalfcpcvllgqnaerldsg........nlscllllvl......................................................... 46 
                 ++c+ +++cpc+++g n++++                    l                                                         
  KOO23924.1   2 SSCIPSCCCPCIQFGLNQRMAFGAsavkwtvlW--------Llplfllyalvnhlvpptaaehanrnpmtmsvadaivsnveqkmgkghpqqgglaaht 92 
                 5688899*******8877773222233222220........1344444555555555555555555556666666667777777777777777778888 PP

       PLAC8  47 ............................................llallvllglgll..atlllRskiRekyniegssceDclaslcCacCalaQeare 99 
                                                             ++++++   ++l+  +++  R+ +Reky+i gs  +D++++  C+cC++a eare
  KOO23924.1  93 psshgkagghhprpsppfsspsaevgagvlsapaegmsrstaysYALPFA---MMLIgaVGAWRRGLLREKYGIGGSALSDFVCHAACCCCSIAKEARE 188
                 88888888888888888888888888888788777776654332222222...222244699999********************************98 PP

>> CcmH  Cytochrome C biogenesis protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.3   0.1    0.0075        45      97     121 ..      31      55 ..      26      78 .. 0.73
   2 ?    7.4   0.0    0.0004       2.4      86     117 ..     121     154 ..     114     163 .. 0.79
   3 ?   -2.5   0.1      0.48   2.9e+03      49      69 ..     181     201 ..     171     204 .. 0.60

  Alignments for each domain:
  == domain 1  score: 3.3 bits;  conditional E-value: 0.0075
                 XXXXXXXXXXXXXXXXXXXXXXXXX CS
        CcmH  97 llLWlgPllllllgllvlllllrrr 121
                  +LWl+Pl+ll + +  l+  +  +
  KOO23924.1  31 TVLWLLPLFLLYALVNHLVPPTAAE 55 
                 58******99998877766555444 PP

  == domain 2  score: 7.4 bits;  conditional E-value: 0.0004
                 -EE---..XXXXXXXXXXXXXXXXXXXXXXXXXX CS
        CcmH  86 VlykPp..vkastllLWlgPllllllgllvllll 117
                 Vl  P   ++ st+  +++P++++l+g+++++++
  KOO23924.1 121 VLSAPAegMSRSTAYSYALPFAMMLIGAVGAWRR 154
                 5666643367899****************99986 PP

  == domain 3  score: -2.5 bits;  conditional E-value: 0.48
                 --SHHHHHHHHHHHHHHHHT- CS
        CcmH  49 SnaelAkdlrrevremlkaGk 69 
                 S a+ A+++r++  e   aG 
  KOO23924.1 181 SIAKEAREIRHQAIEEALAGA 201
                 556667777777666666655 PP

>> RseC_MucC  Positive regulator of sigma(E), RseC/MucC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.1      0.32   1.9e+03      69      80 ..      32      43 ..      13      49 .. 0.75
   2 ?   10.5   1.6   7.5e-05      0.45      56      97 ..     122     163 ..     111     183 .. 0.78

  Alignments for each domain:
  == domain 1  score: -1.3 bits;  conditional E-value: 0.32
   RseC_MucC 69 lvYllPllllil 80
                +++llPl+ll +
  KOO23924.1 32 VLWLLPLFLLYA 43
                578899998876 PP

  == domain 2  score: 10.5 bits;  conditional E-value: 7.5e-05
   RseC_MucC  56 vgieeksllkaallvYllPllllilgallgsallgssellaa 97 
                 ++ +++ + +++++ Y+lP++++++ga+ +   ++  e + +
  KOO23924.1 122 LSAPAEGMSRSTAYSYALPFAMMLIGAVGAWRRGLLREKYGI 163
                 678889999******************988665544454444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (209 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       758  (0.0422779); expected 358.6 (0.02)
Passed bias filter:                      451  (0.0251548); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.42u 0.25s 00:00:00.67 Elapsed: 00:00:00.39
# Mc/sec: 1612.16
//
Query:       KOO23925.1  [L=186]
Description: hypothetical protein Ctob_004775 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
  ------ inclusion threshold ------
       0.77    9.9   5.8        4.6    7.4   1.8    2.5  2  Antimicrobial_5  Bee antimicrobial peptide


Domain annotation for each model (and alignments):
>> Antimicrobial_5  Bee antimicrobial peptide
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.4   1.8   0.00026       4.6       7      23 ..      36      52 ..      33      54 .. 0.91
   2 ?    3.6   0.1    0.0038        68       6      21 ..      81      96 ..      76     101 .. 0.85

  Alignments for each domain:
  == domain 1  score: 7.4 bits;  conditional E-value: 0.00026
  Antimicrobial_5  7 PpggrkPFPTFPGQGpF 23
                     P+++r+  PT P QG++
       KOO23925.1 36 PAPQRRAAPTQPTQGTY 52
                     88999***********9 PP

  == domain 2  score: 3.6 bits;  conditional E-value: 0.0038
  Antimicrobial_5  6 pPpggrkPFPTFPGQG 21
                      Ppggr+ F  F G G
       KOO23925.1 81 APPGGRQSFNIFGGEG 96
                     69**********9998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (186 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       266  (0.0148363); expected 358.6 (0.02)
Passed bias filter:                      164  (0.00914719); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.25s 00:00:00.64 Elapsed: 00:00:00.40
# Mc/sec: 1386.14
//
Query:       KOO23926.1  [L=385]
Description: sel1 domain protein repeat-containing protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.8e-68  223.6  73.2    4.8e-08   33.4   1.6   11.0 11  Sel1      Sel1 repeat
    0.00089   19.4  29.2     0.0088   16.2   0.3    5.7 10  MOFRL     MOFRL family
  ------ inclusion threshold ------
       0.02   14.5   6.1    3.6e+02    0.8   0.0    8.1 11  Blt1_C    Get5 carboxyl domain
       0.21   11.5  22.6        3.4    7.6   0.0    8.8  8  TPR_10    Tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> Sel1  Sel1 repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   0.3   2.5e-06     0.011      12      38 .]       1      27 [.       1      27 [. 0.96
   2 !   25.0   0.7     5e-09   2.2e-05       1      37 [.      28      62 ..      28      63 .. 0.96
   3 !   17.0   0.3   1.6e-06    0.0071       1      38 []      64      99 ..      64      99 .. 0.91
   4 !   30.9   3.3   6.8e-11   3.1e-07       1      38 []     100     135 ..     100     135 .. 0.96
   5 !   24.5   0.8   7.1e-09   3.2e-05       1      38 []     136     171 ..     136     171 .. 0.96
   6 !   27.3   0.6   9.1e-10   4.1e-06       1      37 [.     172     206 ..     172     207 .. 0.96
   7 !   29.8   0.5   1.4e-10   6.4e-07       1      38 []     208     243 ..     208     243 .. 0.96
   8 !   31.7   4.5   3.7e-11   1.6e-07       1      38 []     244     279 ..     244     279 .. 0.97
   9 !   28.2   0.4   4.7e-10   2.1e-06       1      36 [.     280     313 ..     280     315 .. 0.92
  10 !   33.4   1.6   1.1e-11   4.8e-08       1      38 []     316     351 ..     316     351 .. 0.97
  11 ?    4.6   0.0     0.012        55       2      26 ..     353     375 ..     352     376 .. 0.89

  Alignments for each domain:
  == domain 1  score: 16.4 bits;  conditional E-value: 2.5e-06
        Sel1 12 lylnGlgvpkDpekAiewyekAAeqGd 38
                ++ +Glg pkD+ +A++++ +AA+qGd
  KOO23926.1  1 MHADGLGGPKDEAEARRLLGLAAAQGD 27
                6889**********************7 PP

  == domain 2  score: 25.0 bits;  conditional E-value: 5e-09
        Sel1  1 aeAmyrLGmfylylnGlgvpkDpekAiewyekAAeqG 37
                a A+y L+   l+ +G+g pkD+ +A+++y +AAeqG
  KOO23926.1 28 AQAQYTLA--VLHADGRGGPKDEAEARRLYGLAAEQG 62
                68******..99************************9 PP

  == domain 3  score: 17.0 bits;  conditional E-value: 1.6e-06
        Sel1  1 aeAmyrLGmfylylnGlgvpkDpekAiewyekAAeqGd 38
                a A+++L+   ++ +G g pkD+ +A+++y +AA qGd
  KOO23926.1 64 AQAQNNLA--VMHRDGCGGPKDEAEARRLYGLAAVQGD 99
                68******..98899989****************8876 PP

  == domain 4  score: 30.9 bits;  conditional E-value: 6.8e-11
        Sel1   1 aeAmyrLGmfylylnGlgvpkDpekAiewyekAAeqGd 38 
                 a A+y+L+  +++  G+g pkD+ +A+++y +AA+qGd
  KOO23926.1 100 AQAQYNLA--LMHAQGRGGPKDEAEARRLYGLAAAQGD 135
                 68******..999************************7 PP

  == domain 5  score: 24.5 bits;  conditional E-value: 7.1e-09
        Sel1   1 aeAmyrLGmfylylnGlgvpkDpekAiewyekAAeqGd 38 
                 a A+++L+  +++  G g pkD+  A++++ +AA+qGd
  KOO23926.1 136 AQAQCNLA--LMHAQGHGGPKDEAVARRLFGLAAAQGD 171
                 68******..999************************7 PP

  == domain 6  score: 27.3 bits;  conditional E-value: 9.1e-10
        Sel1   1 aeAmyrLGmfylylnGlgvpkDpekAiewyekAAeqG 37 
                 a A+++L+   ++  G g pkD+ +A+++y +AAeqG
  KOO23926.1 172 AQAQCNLA--VMHAQGHGGPKDEAEARRLYGLAAEQG 206
                 68******..999***********************9 PP

  == domain 7  score: 29.8 bits;  conditional E-value: 1.4e-10
        Sel1   1 aeAmyrLGmfylylnGlgvpkDpekAiewyekAAeqGd 38 
                 a A+++L+   ++ +G+g pkD+ +A+++y +AAeqGd
  KOO23926.1 208 AQAQNNLA--VMHRDGRGGPKDEAEARRLYGLAAEQGD 243
                 68******..999************************7 PP

  == domain 8  score: 31.7 bits;  conditional E-value: 3.7e-11
        Sel1   1 aeAmyrLGmfylylnGlgvpkDpekAiewyekAAeqGd 38 
                 aeA+y+L+  +++ +G+g pkD+ +A+++y +AA+qG+
  KOO23926.1 244 AEAQYNLA--LMHADGRGGPKDEAEARRLYALAAAQGY 279
                 79******..999***********************96 PP

  == domain 9  score: 28.2 bits;  conditional E-value: 4.7e-10
        Sel1   1 aeAmyrLGmfylylnGlgvpkDpekAiewyekAAeq 36 
                 a A+y+LG  +++  G+g pkD+ +A+++y +AA q
  KOO23926.1 280 ARAQYNLG--LMHSQGRGGPKDEAEARRLYGLAAVQ 313
                 67******..999********************955 PP

  == domain 10  score: 33.4 bits;  conditional E-value: 1.1e-11
        Sel1   1 aeAmyrLGmfylylnGlgvpkDpekAiewyekAAeqGd 38 
                 a A+y+L+  +++++G+g pkD+ +A++++ +AA+qG+
  KOO23926.1 316 AQAQYNLA--LMHEDGRGGPKDEAEARRLLGLAAAQGH 351
                 68******..999************************9 PP

  == domain 11  score: 4.6 bits;  conditional E-value: 0.012
        Sel1   2 eAmyrLGmfylylnGlgvpkDpekA 26 
                  +++ L+   l+ +G++ pkD+ +A
  KOO23926.1 353 KSQCVLA--VLHADGRDGPKDEAEA 375
                 68999**..999**********999 PP

>> MOFRL  MOFRL family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.6   1.1    0.0039        17      15      61 ..       3      51 ..       1      74 [. 0.79
   2 !    6.1   0.6    0.0028        13      13      60 ..      37      86 ..      28     108 .. 0.80
   3 ?    1.3   0.8     0.084   3.8e+02      14      59 ..      74     121 ..      60     139 .. 0.73
   4 ?    3.5   0.4     0.018        79      14      59 ..     110     157 ..      94     162 .. 0.79
   5 !    5.5   0.8    0.0043        19      14      61 ..     146     195 ..     139     216 .. 0.80
   6 !    5.3   1.2     0.005        22      14      62 ..     182     232 ..     170     256 .. 0.74
   7 !    7.2   0.5    0.0013       5.7      14      61 ..     218     267 ..     207     285 .. 0.80
   8 ?    3.6   0.4     0.017        76      14      59 ..     254     301 ..     242     305 .. 0.75
   9 !    5.3   0.2    0.0048        22      14      59 ..     290     337 ..     280     340 .. 0.82
  10 !   16.2   0.3     2e-06    0.0088      14      61 ..     326     375 ..     320     384 .. 0.80

  Alignments for each domain:
  == domain 1  score: 5.6 bits;  conditional E-value: 0.0039
                S-----HHHHHHHHHHH...HTT..T-TTEEEEEEETTS--SSSS--EE CS
       MOFRL 15 gkGkGGrnqelalalalelkele..gaeevvllsagtDGiDGptdaaGa 61
                 +G GG+  e   + +l l++ +  ++++ +l+ +  DG  Gp+d a a
  KOO23926.1  3 ADGLGGPKDEAEARRLLGLAAAQgdAQAQYTLAVLHADGRGGPKDEAEA 51
                57999**9999988888776666436677789999*********99865 PP

  == domain 2  score: 6.1 bits;  conditional E-value: 0.0028
                --S-----HHHHHHHHHHH...HTT..T-TTEEEEEEETTS--SSSS--E CS
       MOFRL 13 vkgkGkGGrnqelalalalelkele..gaeevvllsagtDGiDGptdaaG 60
                ++ +G+GG+  e   + +  l++ +  ++++  l+ +  DG  Gp+d a 
  KOO23926.1 37 LHADGRGGPKDEAEARRLYGLAAEQgvAQAQNNLAVMHRDGCGGPKDEAE 86
                4678********9999888777776334445559999*********9985 PP

  == domain 3  score: 1.3 bits;  conditional E-value: 0.084
                 -S-----HHHHHHHHHHH...HTT..T-TTEEEEEEETTS--SSSS-- CS
       MOFRL  14 kgkGkGGrnqelalalalelkele..gaeevvllsagtDGiDGptdaa 59 
                 + +G GG+  e   + +  l++++  ++++  l+ +   G  Gp+d a
  KOO23926.1  74 HRDGCGGPKDEAEARRLYGLAAVQgdAQAQYNLALMHAQGRGGPKDEA 121
                 356888888888887777677666334445557778888888888877 PP

  == domain 4  score: 3.5 bits;  conditional E-value: 0.018
                 -S-----HHHHHHHHHHH...HTT..T-TTEEEEEEETTS--SSSS-- CS
       MOFRL  14 kgkGkGGrnqelalalalelkele..gaeevvllsagtDGiDGptdaa 59 
                 + +G+GG+  e   + +  l++ +  +++++ l+ +   G  Gp+d a
  KOO23926.1 110 HAQGRGGPKDEAEARRLYGLAAAQgdAQAQCNLALMHAQGHGGPKDEA 157
                 4679*****999988877666666336677779999999999999987 PP

  == domain 5  score: 5.5 bits;  conditional E-value: 0.0043
                 -S-----HHHHHHHHHHH...HTT..T-TTEEEEEEETTS--SSSS--EE CS
       MOFRL  14 kgkGkGGrnqelalalalelkele..gaeevvllsagtDGiDGptdaaGa 61 
                 + +G+GG+  e + + +  l++ +  +++++ l+ +   G  Gp+d a a
  KOO23926.1 146 HAQGHGGPKDEAVARRLFGLAAAQgdAQAQCNLAVMHAQGHGGPKDEAEA 195
                 467*********99988766666643677888999*********999855 PP

  == domain 6  score: 5.3 bits;  conditional E-value: 0.005
                 -S-----HHHHHHHHHHH...HTT..T-TTEEEEEEETTS--SSSS--EEE CS
       MOFRL  14 kgkGkGGrnqelalalalelkele..gaeevvllsagtDGiDGptdaaGai 62 
                 + +G+GG+  e   + +  l++ +  ++++  l+ +  DG  Gp+d a a 
  KOO23926.1 182 HAQGHGGPKDEAEARRLYGLAAEQgvAQAQNNLAVMHRDGRGGPKDEAEAR 232
                 467********9999888777776334445559999**********99765 PP

  == domain 7  score: 7.2 bits;  conditional E-value: 0.0013
                 -S-----HHHHHHHHHHH...HTT..T-TTEEEEEEETTS--SSSS--EE CS
       MOFRL  14 kgkGkGGrnqelalalalelkele..gaeevvllsagtDGiDGptdaaGa 61 
                 + +G+GG+  e   + +  l++ +  ++++  l+ +  DG  Gp+d a a
  KOO23926.1 218 HRDGRGGPKDEAEARRLYGLAAEQgdAEAQYNLALMHADGRGGPKDEAEA 267
                 467********9998887666665335566679999*********99855 PP

  == domain 8  score: 3.6 bits;  conditional E-value: 0.017
                 -S-----HHHHHHHHHHH...HTT..T-TTEEEEEEETTS--SSSS-- CS
       MOFRL  14 kgkGkGGrnqelalalalelkele..gaeevvllsagtDGiDGptdaa 59 
                 + +G+GG+  e   + + +l++ +  ++++  l  + + G  Gp+d a
  KOO23926.1 254 HADGRGGPKDEAEARRLYALAAAQgyARAQYNLGLMHSQGRGGPKDEA 301
                 46799***9999888877777776334556668899999999999987 PP

  == domain 9  score: 5.3 bits;  conditional E-value: 0.0048
                 -S-----HHHHHHHHHHH...HTT..T-TTEEEEEEETTS--SSSS-- CS
       MOFRL  14 kgkGkGGrnqelalalalelkele..gaeevvllsagtDGiDGptdaa 59 
                 +++G+GG+  e   + +  l++++  ++++  l+ +  DG  Gp+d a
  KOO23926.1 290 HSQGRGGPKDEAEARRLYGLAAVQgvAQAQYNLALMHEDGRGGPKDEA 337
                 467*********999999888888444556669999*********988 PP

  == domain 10  score: 16.2 bits;  conditional E-value: 2e-06
                 -S-----HHHHHHHHHHH...HTT..T-TTEEEEEEETTS--SSSS--EE CS
       MOFRL  14 kgkGkGGrnqelalalalelkele..gaeevvllsagtDGiDGptdaaGa 61 
                 +++G+GG+  e   + +l l++ +  +++++vl+ +  DG DGp+d a a
  KOO23926.1 326 HEDGRGGPKDEAEARRLLGLAAAQghAKSQCVLAVLHADGRDGPKDEAEA 375
                 567********999888877766644678889999***********9976 PP

>> Blt1_C  Get5 carboxyl domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.8   0.0     0.081   3.6e+02      32      42 ..      10      20 ..       9      21 .. 0.90
   2 ?    0.0   0.0      0.14   6.4e+02      32      42 ..      46      56 ..      45      57 .. 0.88
   3 ?    0.0   0.0      0.14   6.4e+02      32      42 ..      82      92 ..      81      93 .. 0.88
   4 ?    0.0   0.0      0.14   6.4e+02      32      42 ..     118     128 ..     117     129 .. 0.88
   5 ?   -2.0   0.0      0.62   2.8e+03      32      42 ..     154     164 ..     154     165 .. 0.87
   6 ?    0.0   0.0      0.14   6.4e+02      32      42 ..     190     200 ..     189     201 .. 0.88
   7 ?    0.0   0.0      0.14   6.4e+02      32      42 ..     226     236 ..     225     237 .. 0.88
   8 ?   -0.3   0.0      0.19   8.4e+02      32      41 ..     262     271 ..     261     273 .. 0.87
   9 ?    0.0   0.0      0.14   6.4e+02      32      42 ..     298     308 ..     297     309 .. 0.88
  10 ?    0.8   0.0     0.081   3.6e+02      32      42 ..     334     344 ..     333     345 .. 0.90
  11 ?   -2.8   0.2       1.1   5.1e+03      32      40 ..     370     378 ..     370     380 .. 0.85

  Alignments for each domain:
  == domain 1  score: 0.8 bits;  conditional E-value: 0.081
      Blt1_C 32 KDeeeaerlrg 42
                KDe+ea+rl+g
  KOO23926.1 10 KDEAEARRLLG 20
                9*******987 PP

  == domain 2  score: 0.0 bits;  conditional E-value: 0.14
      Blt1_C 32 KDeeeaerlrg 42
                KDe+ea+rl g
  KOO23926.1 46 KDEAEARRLYG 56
                9*******976 PP

  == domain 3  score: 0.0 bits;  conditional E-value: 0.14
      Blt1_C 32 KDeeeaerlrg 42
                KDe+ea+rl g
  KOO23926.1 82 KDEAEARRLYG 92
                9*******976 PP

  == domain 4  score: 0.0 bits;  conditional E-value: 0.14
      Blt1_C  32 KDeeeaerlrg 42 
                 KDe+ea+rl g
  KOO23926.1 118 KDEAEARRLYG 128
                 9*******976 PP

  == domain 5  score: -2.0 bits;  conditional E-value: 0.62
      Blt1_C  32 KDeeeaerlrg 42 
                 KDe+ a+rl g
  KOO23926.1 154 KDEAVARRLFG 164
                 9******9965 PP

  == domain 6  score: 0.0 bits;  conditional E-value: 0.14
      Blt1_C  32 KDeeeaerlrg 42 
                 KDe+ea+rl g
  KOO23926.1 190 KDEAEARRLYG 200
                 9*******976 PP

  == domain 7  score: 0.0 bits;  conditional E-value: 0.14
      Blt1_C  32 KDeeeaerlrg 42 
                 KDe+ea+rl g
  KOO23926.1 226 KDEAEARRLYG 236
                 9*******976 PP

  == domain 8  score: -0.3 bits;  conditional E-value: 0.19
      Blt1_C  32 KDeeeaerlr 41 
                 KDe+ea+rl 
  KOO23926.1 262 KDEAEARRLY 271
                 9******996 PP

  == domain 9  score: 0.0 bits;  conditional E-value: 0.14
      Blt1_C  32 KDeeeaerlrg 42 
                 KDe+ea+rl g
  KOO23926.1 298 KDEAEARRLYG 308
                 9*******976 PP

  == domain 10  score: 0.8 bits;  conditional E-value: 0.081
      Blt1_C  32 KDeeeaerlrg 42 
                 KDe+ea+rl+g
  KOO23926.1 334 KDEAEARRLLG 344
                 9*******987 PP

  == domain 11  score: -2.8 bits;  conditional E-value: 1.1
      Blt1_C  32 KDeeeaerl 40 
                 KDe+ea+ +
  KOO23926.1 370 KDEAEARTV 378
                 9****9976 PP

>> TPR_10  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.7   0.1    0.0015       6.9       1      14 [.      63      76 ..      63      76 .. 0.90
   2 ?    1.0   0.1     0.092   4.1e+02       2      16 ..     100     113 ..     100     128 .. 0.76
   3 ?   -1.0   0.2      0.39   1.8e+03       2      14 ..     136     148 ..     136     150 .. 0.85
   4 ?   -0.1   0.1      0.21   9.5e+02       2      14 ..     172     184 ..     172     188 .. 0.86
   5 ?    7.6   0.0   0.00077       3.4       1      14 [.     207     220 ..     207     236 .. 0.82
   6 ?    0.1   0.3      0.18   8.3e+02       2      15 ..     244     257 ..     244     275 .. 0.69
   7 ?    2.3   0.1     0.037   1.7e+02       2      14 ..     280     292 ..     280     307 .. 0.79
   8 ?    0.3   0.0      0.16     7e+02       1      12 [.     315     326 ..     315     345 .. 0.79

  Alignments for each domain:
  == domain 1  score: 6.7 bits;  conditional E-value: 0.0015
      TPR_10  1 tAsslnNLanalrq 14
                +A ++nNLa+++r+
  KOO23926.1 63 VAQAQNNLAVMHRD 76
                699********986 PP

  == domain 2  score: 1.0 bits;  conditional E-value: 0.092
      TPR_10   2 AsslnNLanalrqrg 16 
                 A ++ NLa ++ q g
  KOO23926.1 100 AQAQYNLALMHAQ-G 113
                 67899****9944.3 PP

  == domain 3  score: -1.0 bits;  conditional E-value: 0.39
      TPR_10   2 AsslnNLanalrq 14 
                 A ++ NLa ++ q
  KOO23926.1 136 AQAQCNLALMHAQ 148
                 67999****9975 PP

  == domain 4  score: -0.1 bits;  conditional E-value: 0.21
      TPR_10   2 AsslnNLanalrq 14 
                 A ++ NLa+++ q
  KOO23926.1 172 AQAQCNLAVMHAQ 184
                 67999*****965 PP

  == domain 5  score: 7.6 bits;  conditional E-value: 0.00077
      TPR_10   1 tAsslnNLanalrq 14 
                 +A ++nNLa+++r+
  KOO23926.1 207 VAQAQNNLAVMHRD 220
                 699*********87 PP

  == domain 6  score: 0.1 bits;  conditional E-value: 0.18
      TPR_10   2 AsslnNLanalrqr 15 
                 A ++ NLa ++ + 
  KOO23926.1 244 AEAQYNLALMHADG 257
                 67899999999764 PP

  == domain 7  score: 2.3 bits;  conditional E-value: 0.037
      TPR_10   2 AsslnNLanalrq 14 
                 A+++ NL+ +++q
  KOO23926.1 280 ARAQYNLGLMHSQ 292
                 7899*******76 PP

  == domain 8  score: 0.3 bits;  conditional E-value: 0.16
      TPR_10   1 tAsslnNLanal 12 
                 +A ++ NLa ++
  KOO23926.1 315 VAQAQYNLALMH 326
                 689999999998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (385 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       206  (0.0114898); expected 358.6 (0.02)
Passed bias filter:                      104  (0.00580066); expected 358.6 (0.02)
Passed Vit filter:                         6  (0.000334653); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.45u 0.26s 00:00:00.71 Elapsed: 00:00:00.41
# Mc/sec: 2845.30
//
Query:       KOO23927.1  [L=511]
Description: aspartyl aminopeptidase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
   1.8e-144  481.7   0.0    7.3e-81  272.1   0.0    2.0  2  Peptidase_M18  Aminopeptidase I zinc metalloprotease (M18)
    2.2e-06   26.9   0.0    0.00094   18.3   0.0    2.2  2  Peptidase_M42  M42 glutamyl aminopeptidase


Domain annotation for each model (and alignments):
>> Peptidase_M18  Aminopeptidase I zinc metalloprotease (M18)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  207.7   0.0   2.9e-65   2.6e-61       1     175 [.       3     179 ..       3     197 .. 0.93
   2 !  272.1   0.0   8.2e-85   7.3e-81     186     431 ..     246     498 ..     219     499 .. 0.93

  Alignments for each domain:
  == domain 1  score: 207.7 bits;  conditional E-value: 2.9e-65
                    HHHH--SHHHHHHHHHHHHHCTT-EESTTTS-ST..STTCEEEEEEETTTEEEEEEEETTS-GGG--EEEEEE---SEEEEECCEEEEETTEEEEE CS
  Peptidase_M18   1 finksptpyhvvaevaekllkagfkelsekekwk..iepggkyfvtrngssliAFavgkkykaengfsiigaHtDsptlrvKpkskkkaegylqvg 94 
                    +++ksp p+h+++++ ++l  agf  ++ek+ w    ++gg+y+ trn+s ++AFavg+ y+++ngf++igaHtDsp+lrvKp sk++++g +q  
     KOO23927.1   3 YLDKSPDPFHATQNACDRLAAAGFMAIDEKDAWTgkLAKGGRYYFTRNRSCIVAFAVGGAYEPGNGFKVIGAHTDSPNLRVKPRSKRSNAGITQLS 98 
                    799******************************98889********************************************************** PP

                    EEEESS.SSGGGTT--EEEEEEEEECTT--EEEEEECCSTT---BBB----GGG-GG...GSS--TTTTTSEEEEEEEE--- CS
  Peptidase_M18  95 vetYGggiwetWldrdLsvaGrvlvkkkkeekleaklvnierPvlriPnlaiHLdrdi.neefkfneetelepilglaeeee 175
                    ve YGgg w+tW+drdLs++Grv+++++ ++  e++lv+i+rPvlr+P+l iHL+    +e fk+n+e++l+pil++++ ++
     KOO23927.1  99 VECYGGGLWHTWFDRDLSLSGRVMLRSA-SGGFEQRLVRIPRPVLRVPTLCIHLQSTEeREAFKVNKEDHLQPILATEALKS 179
                    ***************************9.899**********************97651578**************977444 PP

  == domain 2  score: 272.1 bits;  conditional E-value: 8.2e-85
                    CCHHHHHHHHHHHHTS-CCCCCCCEEEEEE-S--EEETTTT-EEEESSHHHHHHHHHHHHHHCCCCHT..-TTTS-SEEEEEEESSCCGTS-STTS CS
  Peptidase_M18 186 khkkalleliaeelgvevedivdlelilvdaqkakivGiekeflfaprlDnkvscfaaleallesaed..sleeedkvrivalfDnEEvGStsaqG 279
                      ++ l++++aeelgv  e+i+d+e  l+d+q+a++ G++ efl + rlDn+ scf a eal+e a +   +++++ v+++alfD+EEvGS s  G
     KOO23927.1 246 GQEPLLVSMLAEELGVPAESILDFECSLFDTQPAALSGVHSEFLVSSRLDNLASCFVATEALIEHAPSaeAIKDDPDVSLIALFDHEEVGSGSTSG 341
                    55678999********************************************************99887789************************ PP

                    GGCTHHHHHHHHHHHHHCSTT-HCHHHH....HC-EEEEE--EE---TTSGGGS-TTTS--TTSEEEEEEETTSSSTT-HHHHHHHHHHHHHHC-E CS
  Peptidase_M18 280 adsnfleevlerisialkkseafeeavl....akSlliSaDvahaihPnysskheenhapllnkGvvikvnanqryatnsagaallkevaqkanvk 371
                    a s  +   ++ris+al+ + ++   vl     kS+++SaD+aha+hPny+skhe++h p++n G+vik n+nqrya+n ++  +++e+ ++a+ +
     KOO23927.1 342 AGSPVMGDAVRRISSALSGGGTLADDVLaaalSKSFVLSADMAHAVHPNYASKHEKSHGPQMNRGIVIKSNSNQRYASNGVTSFVVRELSRRAGLP 437
                    ***************99887744444444556**************************************************************87 PP

                    E.EEEEE-TTS----HCHHHHHHHHT-EEEEEE-EEBSTTSSSEEEECCHHHHHHHHHHHC CS
  Peptidase_M18 372 l.QelvvrndspcGstigpilaaktGirtiDlGaaqlsmHSireltgskdveeavklfkaF 431
                      Qe+vvrnd pcGstigpi++a tG+r +D+G+++lsmHS+re++g +d+++   lf aF
     KOO23927.1 438 ApQEFVVRNDCPCGSTIGPIISASTGMRAVDVGMPMLSMHSVREVMGVADLTHGKELFAAF 498
                    55*********************************************************99 PP

>> Peptidase_M42  M42 glutamyl aminopeptidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.6   0.0   0.00039       3.5     123     171 ..     284     337 ..     256     350 .. 0.69
   2 !   18.3   0.0     1e-07   0.00094     174     292 .]     367     494 ..     362     494 .. 0.81

  Alignments for each domain:
  == domain 1  score: 6.6 bits;  conditional E-value: 0.00039
                    ETTECEEETTHHHHHHHHHHHHHHHHHCT..SS-S....SEEEEEEESTCTTTSH CS
  Peptidase_M42 123 langkivskalDdragvavllellkelke..eele....atvylvatvqEEvGlr 171
                    ++++++vs  lD+ a++ v+ e+l e +   e+++    + +++++  +EEvG +
     KOO23927.1 284 VHSEFLVSSRLDNLASCFVATEALIEHAPsaEAIKddpdVSLIALF-DHEEVGSG 337
                    567889***************9986544300233345324444444.36888876 PP

  == domain 2  score: 18.3 bits;  conditional E-value: 1e-07
                    HHHHHHH--SEEEEEEEEEE.-CSTTSTTTTSS...TTS-CEEEEEETTCCSHHHHHHHHH.HHHHHTT--EEEE.EESS...SSSTHHHHHTSTT CS
  Peptidase_M42 174 ktsaekikpdiaiavDvtaa.gdtpgskekeak...lgkGpvirvkDasgiyhpklrkkll.elAkknnipyqle.vlsg...ggtDAgaihltge 260
                     ++a  ++ ++++  D+++a + ++ sk+++++   ++ G+vi+   ++  ++++++++++ el +++++p   e v+++    g+  g i+ + +
     KOO23927.1 367 DVLAAALSKSFVLSADMAHAvHPNYASKHEKSHgpqMNRGIVIKSNSNQRYASNGVTSFVVrELSRRAGLPAPQEfVVRNdcpCGSTIGPIISAST 462
                    567777788888999999984444444444444788**********************97538********99995555433368889999***** PP

                    TSEEEEEEEEEBSTTSTTEEEEHHHHHHHHHH CS
  Peptidase_M42 261 gvptalisiptryiHspvevahlddleatvkL 292
                    g++++ +++p+  +Hs  ev+ + dl + ++L
     KOO23927.1 463 GMRAVDVGMPMLSMHSVREVMGVADLTHGKEL 494
                    *************************9987765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (511 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       391  (0.0218082); expected 358.6 (0.02)
Passed bias filter:                      316  (0.0176251); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.53u 0.27s 00:00:00.80 Elapsed: 00:00:00.45
# Mc/sec: 3393.75
//
Query:       KOO23928.1  [L=661]
Description: flagella-associated protein fap196-like protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    3.5e-37  125.7  37.2    3.2e-06   27.8   0.0   11.3 13  WD40          WD domain, G-beta repeat
    1.4e-15   57.3   2.5    6.5e-05   23.2   0.2    6.4  6  ANAPC4_WD40   Anaphase-promoting complex subunit 4 WD40 domai
    1.7e-07   30.3   0.4     0.0036   16.0   0.0    3.7  4  Nup160        Nucleoporin Nup120/160
      1e-06   28.0   0.2      0.032   13.2   0.0    4.2  5  Ge1_WD40      WD40 region of Ge1, enhancer of mRNA-decapping 
    5.2e-06   26.2   2.6     0.0015   18.1   0.2    3.5  3  PQQ_2         PQQ-like domain
    6.1e-05   22.5   0.1        0.1   11.9   0.0    3.7  4  WD40_like     WD40-like domain
     0.0061   17.0  13.9         20    5.8   0.2    8.6  9  PQQ_3         PQQ-like domain
  ------ inclusion threshold ------
      0.021   13.3   0.6        2.7    6.4   0.2    3.5  3  Cytochrom_D1  Cytochrome D1 heme domain
      0.094   12.4   0.1         97    2.6   0.0    4.0  5  Hira          TUP1-like enhancer of split


Domain annotation for each model (and alignments):
>> WD40  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.1       1.6   3.3e+03      15      26 ..      17      28 ..       5      39 .. 0.72
   2 !   23.7   1.3   3.1e-08   6.2e-05       3      38 .]      45      83 ..      43      83 .. 0.92
   3 ?    0.4   0.0      0.73   1.5e+03      18      38 .]     105     125 ..      87     125 .. 0.73
   4 ?    4.4   0.1      0.04        79      14      29 ..     198     213 ..     186     220 .. 0.78
   5 ?    4.6   0.3     0.033        65       4      37 ..     228     266 ..     225     267 .. 0.73
   6 ?   -3.4   0.1         9   1.8e+04       3      32 ..     287     306 ..     286     307 .. 0.64
   7 !   27.8   0.0   1.6e-09   3.2e-06       7      38 .]     345     378 ..     339     378 .. 0.83
   8 ?   -1.0   0.1       1.9   3.8e+03       5      35 ..     392     418 ..     388     418 .. 0.62
   9 !   18.1   0.2   1.8e-06    0.0035       9      37 ..     434     463 ..     425     464 .. 0.89
  10 !   26.6   0.1   3.6e-09   7.2e-06       6      38 .]     473     506 ..     468     506 .. 0.89
  11 ?   -1.2   0.0       2.4   4.7e+03      13      38 .]     523     548 ..     515     548 .. 0.83
  12 !    9.5   0.3   0.00094       1.9      23      38 .]     588     603 ..     581     603 .. 0.87
  13 !   27.2   0.0   2.4e-09   4.8e-06       7      38 .]     613     645 ..     609     645 .. 0.90

  Alignments for each domain:
  == domain 1  score: -0.7 bits;  conditional E-value: 1.6
                EEEEETTSSEEE CS
        WD40 15 slafspdgawla 26
                s+ ++p+g++++
  KOO23928.1 17 SVHVHPSGDYIV 28
                666799999974 PP

  == domain 2  score: 23.7 bits;  conditional E-value: 3.1e-08
                EEEEEESS.SSEEEEEEETTSSEEEEE..ETTSEEEEEE CS
        WD40  3 clrtltGH.ssvtslafspdgawlasG..sdDgtvriWd 38
                +++ l+GH ++v++++ s++g++++sG  +++  v iWd
  KOO23928.1 45 QQHFLRGHdDHVSCVSLSKSGRYIVSGqhGENSDVLIWD 83
                57889***888****************9889*******9 PP

  == domain 3  score: 0.4 bits;  conditional E-value: 0.73
                 EETTSSEEEEEETTSEEEEEE CS
        WD40  18 fspdgawlasGsdDgtvriWd 38 
                  s+d ++l++ + D++   Wd
  KOO23928.1 105 ISDDERFLLTVGADKKMVAWD 125
                 799999998776699988887 PP

  == domain 4  score: 4.4 bits;  conditional E-value: 0.04
                 EEEEEETTSSEEEEEE CS
        WD40  14 tslafspdgawlasGs 29 
                 t++afs d +++++Gs
  KOO23928.1 198 TAIAFSFDEDYFFAGS 213
                 899*********9885 PP

  == domain 5  score: 4.6 bits;  conditional E-value: 0.033
                 EEEEESS.SS....EEEEEEETTSSEEEEEETTSEEEEE CS
        WD40   4 lrtltGH.ss....vtslafspdgawlasGsdDgtvriW 37 
                 l++ tG  s+    + ++++  +g+ ++ G+ Dg++ ++
  KOO23928.1 228 LHSTTGCgSGgvlsIVAMRTANSGDRVIVGCGDGSISVF 266
                 67777775446555567779999999998966****986 PP

  == domain 6  score: -3.4 bits;  conditional E-value: 9
                 EEEEEESSSSEEEEEEETTSSEEEEEETTS CS
        WD40   3 clrtltGHssvtslafspdgawlasGsdDg 32 
                 c+ tl+G  +vt+l        ++ + dD+
  KOO23928.1 287 CTITLDG--GVTAL--------VLRAADDR 306
                 5566666..49999........77555576 PP

  == domain 7  score: 27.8 bits;  conditional E-value: 1.6e-09
                 EESS.SSEEEEEEETTSSE.EEEEETTSEEEEEE CS
        WD40   7 ltGH.ssvtslafspdgaw.lasGsdDgtvriWd 38 
                  +GH + vt++a++pd++  +a++s Dgtvr+Wd
  KOO23928.1 345 TEGHyDAVTCVAYPPDSSEyFATASADGTVRMWD 378
                 46**999*****77777776999999*******9 PP

  == domain 8  score: -1.0 bits;  conditional E-value: 1.9
                 EEEESSSSEEEEEEETTSSEEEEE.ETTSEEE CS
        WD40   5 rtltGHssvtslafspdgawlasG.sdDgtvr 35 
                 + +tG    t+l     g+ +++G   Dg++r
  KOO23928.1 392 TRITGK--PTCL--TFTGDVIFTGwE-DGKIR 418
                 555554..4788..446666777666.99987 PP

  == domain 9  score: 18.1 bits;  conditional E-value: 1.8e-06
                 SS.SSEEEEEEETTSSEEEEEETTSEEEEE CS
        WD40   9 GH.ssvtslafspdgawlasGsdDgtvriW 37 
                  H ++vtsl  s+++++l+sG++ g vr+W
  KOO23928.1 434 CHvDGVTSLTSSRNKKFLVSGGEHGEVRVW 463
                 68888************************* PP

  == domain 10  score: 26.6 bits;  conditional E-value: 3.6e-09
                 EEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40   6 tltGH.ssvtslafspdgawlasGsdDgtvriWd 38 
                  l+ H s vtsl+   d + ++sGs+D+t+++Wd
  KOO23928.1 473 NLKQHtSAVTSLCLFADDSHVVSGSRDRTIYLWD 506
                 5789*777*****999999999***********9 PP

  == domain 11  score: -1.2 bits;  conditional E-value: 2.4
                 EEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40  13 vtslafspdgawlasGsdDgtvriWd 38 
                 ++++   pd+  la+ +  +++ +Wd
  KOO23928.1 523 ISAVILLPDHVQLATVGQEKSLTFWD 548
                 77777889999999999999999998 PP

  == domain 12  score: 9.5 bits;  conditional E-value: 0.00094
                 SEEEEEETTSEEEEEE CS
        WD40  23 awlasGsdDgtvriWd 38 
                 + +a+G+ Dg vr+W+
  KOO23928.1 588 TIVATGGVDGVVRLWS 603
                 4589***********5 PP

  == domain 13  score: 27.2 bits;  conditional E-value: 2.4e-09
                 EESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40   7 ltGH.ssvtslafspdgawlasGsdDgtvriWd 38 
                  +GH + ++sl+f pdg+ l+s++dDg v +W+
  KOO23928.1 613 GRGHsGAIRSLKFAPDGRQLVSAGDDGAVLVWN 645
                 58**555*************************8 PP

>> ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.8   0.0      0.32   6.3e+02      36      79 ..      51      96 ..      18     103 .. 0.75
   2 ?    4.2   0.0     0.027        54      27      81 ..      88     140 ..      74     148 .. 0.78
   3 ?    1.6   0.0      0.18   3.5e+02      41      68 ..     242     269 ..     224     291 .. 0.76
   4 !    9.2   0.0   0.00071       1.4      35      90 ..     346     404 ..     306     406 .. 0.81
   5 !   23.2   0.2   3.2e-08   6.5e-05       8      87 ..     406     484 ..     404     518 .. 0.91
   6 !   12.1   0.0   9.3e-05      0.19      32      66 ..     604     645 ..     592     650 .. 0.82

  Alignments for each domain:
  == domain 1  score: 0.8 bits;  conditional E-value: 0.32
  ANAPC4_WD40 36 kedsevrsLaWkpdgklLavay..sdgevrlldaesgkvvhslsvk 79
                 ++d +v++++ +++g+ ++ +   +++ v + d  s +++  l+ +
   KOO23928.1 51 GHDDHVSCVSLSKSGRYIVSGQhgENSDVLIWDFDSRQIMYRLQEH 96
                 6788999999999999999986224668888888888888777655 PP

  == domain 2  score: 4.2 bits;  conditional E-value: 0.027
  ANAPC4_WD40  27 qrvwtleedkedsevrsLaWkpdgklLavaysdgevrlldaesgkvvhslsvkse 81 
                  q ++ l  +++d  ++ ++ + d+++L  + +d ++   d+++g +v   +  ++
   KOO23928.1  88 QIMYRL--QEHDLGIKLVMISDDERFLLTVGADKKMVAWDMQTGMIVARQTGIKD 140
                  444444..799999******************************99987665554 PP

  == domain 3  score: 1.6 bits;  conditional E-value: 0.18
  ANAPC4_WD40  41 vrsLaWkpdgklLavaysdgevrlldae 68 
                  + +++  ++g    v++ dg++++++ +
   KOO23928.1 242 IVAMRTANSGDRVIVGCGDGSISVFEGQ 269
                  666777789999**********998755 PP

  == domain 4  score: 9.2 bits;  conditional E-value: 0.00071
  ANAPC4_WD40  35 dkedsevrsLaWkpdg.klLavaysdgevrlldaesgkvvhslsvksek..avtclgWg 90 
                  +++   v+++a+ pd  + +a a +dg+vr+ d+++ +v    s+++    + tcl+++
   KOO23928.1 346 EGHYDAVTCVAYPPDSsEYFATASADGTVRMWDVNTYEVTCMGSCQTRItgKPTCLTFT 404
                  5566789999999986379***************9999877666665434478888875 PP

  == domain 5  score: 23.2 bits;  conditional E-value: 3.2e-08
  ANAPC4_WD40   8 DLiAlatedgellvfRl.ngqrvwtleedkedsevrsLaWkpdgklLavaysdgevrlldaesgkvvhslsvksekavtcl 87 
                  D i  + edg+++++   ngq++w +++  +   v+sL  + + k+L+ + + gevr+ ++ + +++ +l+ +++ avt+l
   KOO23928.1 406 DVIFTGWEDGKIRAHEAeNGQELWAIDH-CHVDGVTSLTSSRNKKFLVSGGEHGEVRVWEIRTREMIVNLKQHTS-AVTSL 484
                  7777888999**9999879*******55.55567*************************************9988.57765 PP

  == domain 6  score: 12.1 bits;  conditional E-value: 9.3e-05
  ANAPC4_WD40  32 l.......eedkedsevrsLaWkpdgklLavaysdgevrlld 66 
                  +       e  ++++ +rsL++ pdg+ L+ a +dg+v + +
   KOO23928.1 604 FvkagviaEGRGHSGAIRSLKFAPDGRQLVSAGDDGAVLVWN 645
                  445555556678899*********************998766 PP

>> Nup160  Nucleoporin Nup120/160
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.3   0.0   0.00077       1.5     226     256 ..     103     135 ..      92     184 .. 0.85
   2 !   16.0   0.0   1.8e-06    0.0036     229     321 ..     361     479 ..     348     507 .. 0.82
   3 !    3.7   0.1    0.0097        19     220     253 ..     480     513 ..     471     519 .. 0.76
   4 ?   -2.3   0.0      0.65   1.3e+03     229     247 ..     586     604 ..     576     612 .. 0.81

  Alignments for each domain:
  == domain 1  score: 7.3 bits;  conditional E-value: 0.00077
                 .....TTTEEEEEETT-EEEEEETTTTEEEEEE CS
      Nup160 226 vei..gqtylfalsrdgkLrvWnlltgkclati 256
                 v+i  ++ +l+++  d+k+ +W+ +tg+++a +
  KOO23928.1 103 VMIsdDERFLLTVGADKKMVAWDMQTGMIVARQ 135
                 4455599**********************9974 PP

  == domain 2  score: 16.0 bits;  conditional E-value: 1.8e-06
                 TTTEEEEEETT-EEEEEETTTTEEEEEEE--...........................-SSSTTS--SSEESEEESSSSEEEE...........E--GG CS
      Nup160 229 gqtylfalsrdgkLrvWnlltgkclatidll..........................rdeeaqdessskstldpaesslirvs.dggqsylvvtyspss 300
                  + y +++s dg++r+W+++t+ ++  ++++                          r  ea++ ++ +  +d+ +   + +  +++ + + v  s  +
  KOO23928.1 361 SSEYFATASADGTVRMWDVNTYEVTCMGSCQtritgkptcltftgdviftgwedgkiRAHEAENGQELW-AIDHCHVDGVTSLtSSRNKKFLV--SGGE 456
                 678999*****************9999999999999999999999999999999999999999999999.99988865555444777788888..8999 PP

                 G-EEEEEEEEEEE-.....SSSE CS
      Nup160 301 ggefkvwkvkkedtsvs..lglv 321
                 +ge  vw ++++ ++v+  ++ +
  KOO23928.1 457 HGEVRVWEIRTREMIVNlkQHTS 479
                 99999999999999998533333 PP

  == domain 3  score: 3.7 bits;  conditional E-value: 0.0097
                 EEET.........TTTEEEEEETT-EEEEEETTTTEEE CS
      Nup160 220 dvavavvei....gqtylfalsrdgkLrvWnlltgkcl 253
                 +v++         +++++++ srd+++ +W+l+t ++ 
  KOO23928.1 480 AVTS----LclfaDDSHVVSGSRDRTIYLWDLQTESRK 513
                 3333....3444599*******************9865 PP

  == domain 4  score: -2.3 bits;  conditional E-value: 0.65
                 TTTEEEEEETT-EEEEEET CS
      Nup160 229 gqtylfalsrdgkLrvWnl 247
                 ++t++++  +dg++r+W+ 
  KOO23928.1 586 ASTIVATGGVDGVVRLWSF 604
                 689999999********96 PP

>> Ge1_WD40  WD40 region of Ge1, enhancer of mRNA-decapping protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.0      0.68   1.4e+03      25      74 ..      18      62 ..      14      96 .. 0.58
   2 !   13.2   0.0   1.6e-05     0.032     141     221 ..     305     384 ..     297     407 .. 0.78
   3 ?   -0.3   0.0      0.21   4.1e+02     166     217 ..     456     508 ..     435     518 .. 0.68
   4 ?   -0.9   0.0      0.32   6.3e+02     199     215 ..     587     603 ..     564     609 .. 0.80
   5 !    8.1   0.0   0.00058       1.2     186     221 ..     615     651 ..     605     654 .. 0.85

  Alignments for each domain:
  == domain 1  score: -2.0 bits;  conditional E-value: 0.68
    Ge1_WD40 25 vavhregkylayaikvkntgeglvrvvnketeeraLlkglkgevldlafa 74
                v vh +g y+ ya+ ++      v    ++ +++ +l+g  ++v  ++++
  KOO23928.1 18 VHVHPSGDYIVYALGGNV-----VVASLRDAHQQHFLRGHDDHVSCVSLS 62
                568888888888886653.....222233344444555555555555544 PP

  == domain 2  score: 13.2 bits;  conditional E-value: 1.6e-05
    Ge1_WD40 141 deaskllvltrgdkaeiwsvdmiaskygsgelsveeieegllkieehsliveaafspdGt.alatasedGevkffqvylede 221
                 d + ++ +l+ +++a ++ v+  +++++ +++ ++e +  +l   +   +++ a+ pd     atas+dG+v+++ v+  + 
  KOO23928.1 305 DRSGEIKLLAGTSHARVYAVQLSMADFRAISAPPAECR--MLTEGHYDAVTCVAYPPDSSeYFATASADGTVRMWDVNTYEV 384
                 4444556677789999*****99999999888877654..566555679*********87358**************98765 PP

  == domain 3  score: -0.3 bits;  conditional E-value: 0.21
    Ge1_WD40 166 kygsgelsveeieegllkieehs.liveaafspdGtalatasedGevkffqvy 217
                 ++g+  +   +++e ++++++h+  +++  + +d   +   s d ++ ++ + 
  KOO23928.1 456 EHGEVRVWEIRTREMIVNLKQHTsAVTSLCLFADDSHVVSGSRDRTIYLWDLQ 508
                 44555555555566677777775467777777777777777777777776654 PP

  == domain 4  score: -0.9 bits;  conditional E-value: 0.32
    Ge1_WD40 199 GtalatasedGevkffq 215
                  t +at   dG+v+++ 
  KOO23928.1 587 STIVATGGVDGVVRLWS 603
                 5899**********996 PP

  == domain 5  score: 8.1 bits;  conditional E-value: 0.00058
    Ge1_WD40 186 ehs.liveaafspdGtalatasedGevkffqvylede 221
                  hs  i +  f+pdG  l  a  dG v  + v+l +e
  KOO23928.1 615 GHSgAIRSLKFAPDGRQLVSAGDDGAVLVWNVFLDEE 651
                 5665788899***********************9875 PP

>> PQQ_2  PQQ-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.8   0.0      0.15     3e+02      34      61 ..     107     134 ..      69     140 .. 0.65
   2 ?    4.5   0.0     0.011        22      35     138 ..     205     325 ..     172     332 .. 0.67
   3 !   18.1   0.2   7.8e-07    0.0015      89     232 ..     365     511 ..     339     514 .. 0.65

  Alignments for each domain:
  == domain 1  score: 0.8 bits;  conditional E-value: 0.15
       PQQ_2  34 lsggtlfvatgggrlvaldaatGkvlWe 61 
                  +++ l++++   ++va+d  tG ++ +
  KOO23928.1 107 DDERFLLTVGADKKMVAWDMQTGMIVAR 134
                 4555666667777777777777776655 PP

  == domain 2  score: 4.5 bits;  conditional E-value: 0.011
       PQQ_2  35 sggtlfvatgggrlvaldaatGkvlWettl.egpvvga....plvaegrvvvvasdgqliald.aedGkrlWstqqrs...........eepaelrssa 116
                 +++++f+++ +  ++a+  + + ++ +t + +g v+++      ++++rv+v  +dg+++ ++ +++G +  +t+qr+           + +a ++++a
  KOO23928.1 205 DEDYFFAGSSSSDFTAVHVKHKVLHSTTGCgSGGVLSIvamrTANSGDRVIVGCGDGSISVFEgQRNGAQTCRTYQRGsaeactitldgGVTALVLRAA 303
                 777777777777777777666666666667777777777776788999999999*********99*****99999999443333333211111133333 PP

       PQQ_2 117 spavagdtvvvgessgklvald 138
                 ++  +  ++++g+s  +++a++
  KOO23928.1 304 DDRSGEIKLLAGTSHARVYAVQ 325
                 3333356666666666666665 PP

  == domain 3  score: 18.1 bits;  conditional E-value: 7.8e-07
       PQQ_2  89 ialdaedGkr.lWstqqrse.epae...lrssaspava...gdtvvvgessgklvaldpkdGkvlWerelaaprgtselsrvgdisgrpvvaeg.tVya 178
                  a  ++dG++  W  + + e  ++     r +++p+     gd+++ g ++gk+ a  +++G++lW                +d   +++++++ + ++
  KOO23928.1 365 FATASADGTVrMWD-VNTYEvTCMGscqTRITGKPTCLtftGDVIFTGWEDGKIRAHEAENGQELWAIDH----------CHVDGVTSLTSSRNkKFLV 452
                 44444555543566.44442244443333444444443456*************************9944..........2256677777777778889 PP

       PQQ_2 179 ssgqgrllal.dlatgr..rlwskeissinglpi.ldgdllyvvsa.gelialdratGa 232
                 s+g+ + + + +++t +  ++ ++  s++++l + +d+  ++ +s+  +++ +d++t +
  KOO23928.1 453 SGGEHGEVRVwEIRTREmiVNLKQHTSAVTSLCLfADDSHVVSGSRdRTIYLWDLQTES 511
                 98888767777999999433334445556664430444555555547********9976 PP

>> WD40_like  WD40-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.6   0.0    0.0044       8.7       5      79 ..      58     135 ..      54     149 .. 0.81
   2 ?   -2.2   0.0         1     2e+03     205     243 ..     205     243 ..     198     265 .. 0.60
   3 ?   -1.9   0.0      0.83   1.7e+03      90     108 ..     249     267 ..     241     277 .. 0.81
   4 !   11.9   0.0   5.1e-05       0.1       5      99 ..     441     537 ..     437     543 .. 0.88

  Alignments for each domain:
  == domain 1  score: 5.6 bits;  conditional E-value: 0.0044
   WD40_like   5 sidiskkgslilyG..gkddkctvlkleslesvsivesfedSvifvkllddd.lilvvtlDGtillslleneeevene 79 
                  + +sk g +i+ G  g++  + + +++s ++++ +++ +  +  v + dd+  +l v  D +++  +++ + +v  +
  KOO23928.1  58 CVSLSKSGRYIVSGqhGENSDVLIWDFDSRQIMYRLQEHDLGIKLVMISDDErFLLTVGADKKMVAWDMQTGMIVARQ 135
                 6889*********965667778899**************999999988888856678999*99999999999966544 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 1
   WD40_like 205 vddylivGgsfkyllliNiklnvntfklrlevegiskik 243
                  +dy++ G s +  + + +k +v + +  + + g+  i+
  KOO23928.1 205 DEDYFFAGSSSSDFTAVHVKHKVLHSTTGCGSGGVLSIV 243
                 456666666666666666666665555555555555554 PP

  == domain 3  score: -1.9 bits;  conditional E-value: 0.83
   WD40_like  90 viddklliGtnkGsiyvfs 108
                 + +d++++G   Gsi vf+
  KOO23928.1 249 NSGDRVIVGCGDGSISVFE 267
                 5678999999999999987 PP

  == domain 4  score: 11.9 bits;  conditional E-value: 5.1e-05
   WD40_like   5 sidiskkgslilyGgkddkctvlkleslesvsivesfedSvi.fvklldddlilvvtlDGtillsllenee.evenekieedistvkviddklliGt 99 
                 s+  s++ ++++ Gg++ +++v ++++ e++  +++ +  v   + + dd +++ ++ D ti l +l+ e  + + +++   is v  + d++ + t
  KOO23928.1 441 SLTSSRNKKFLVSGGEHGEVRVWEIRTREMIVNLKQHTSAVTsLCLFADDSHVVSGSRDRTIYLWDLQTESrKASLTQRMGGISAVILLPDHVQLAT 537
                 6677899999**************************9999973677888889999************999989999999999999999999987655 PP

>> PQQ_3  PQQ-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.0         3     6e+03      19      28 ..      31      39 ..      14      58 .. 0.68
   2 ?    1.5   0.0      0.24   4.7e+02      20      40 .]     108     128 ..      99     128 .. 0.86
   3 ?   -0.2   0.0      0.77   1.5e+03      18      37 ..     203     222 ..     188     224 .. 0.80
   4 ?    5.8   0.2      0.01        20      18      36 ..     248     266 ..     231     269 .. 0.81
   5 ?    2.5   0.1      0.11   2.2e+02      10      36 ..     292     324 ..     278     327 .. 0.67
   6 ?    0.7   0.1       0.4   7.9e+02      28      40 .]     367     381 ..     363     381 .. 0.75
   7 ?    1.2   0.0       0.3   5.9e+02      13      39 ..     394     423 ..     390     424 .. 0.71
   8 ?    3.4   0.1      0.06   1.2e+02      19      40 .]     488     509 ..     425     509 .. 0.77
   9 ?   -1.2   0.1       1.6   3.1e+03      12      34 ..     614     642 ..     600     646 .. 0.60

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 3
       PQQ_3 19 vdgglvyvgt 28
                + gg v+v++
  KOO23928.1 31 L-GGNVVVAS 39
                2.55555554 PP

  == domain 2  score: 1.5 bits;  conditional E-value: 0.24
       PQQ_3  20 dgglvyvgtgdGtlyAlDaet 40 
                 d++ + +++ d +++A D +t
  KOO23928.1 108 DERFLLTVGADKKMVAWDMQT 128
                 4578899999********987 PP

  == domain 3  score: -0.2 bits;  conditional E-value: 0.77
       PQQ_3  18 avdgglvyvgtgdGtlyAlD 37 
                  +d+++ ++g++   ++A++
  KOO23928.1 203 SFDEDYFFAGSSSSDFTAVH 222
                 5689********99999986 PP

  == domain 4  score: 5.8 bits;  conditional E-value: 0.01
       PQQ_3  18 avdgglvyvgtgdGtlyAl 36 
                 a +g++v vg+gdG++  +
  KOO23928.1 248 ANSGDRVIVGCGDGSISVF 266
                 668************9877 PP

  == domain 5  score: 2.5 bits;  conditional E-value: 0.11
       PQQ_3  10 pgpvnssp..avdgg....lvyvgtgdGtlyAl 36 
                 +g v++ +  a+d++    ++ +gt+  ++yA+
  KOO23928.1 292 DGGVTALVlrAADDRsgeiKLLAGTSHARVYAV 324
                 44443333555666544555999********98 PP

  == domain 6  score: 0.7 bits;  conditional E-value: 0.4
       PQQ_3  28 tg..dGtlyAlDaet 40 
                 t   dGt+++ D +t
  KOO23928.1 367 TAsaDGTVRMWDVNT 381
                 4445******99877 PP

  == domain 7  score: 1.2 bits;  conditional E-value: 0.3
       PQQ_3  13 vnssp...avdgglvyvgtgdGtlyAlDae 39 
                 +++ p   ++ g+++++g +dG+++A +ae
  KOO23928.1 394 ITGKPtclTFTGDVIFTGWEDGKIRAHEAE 423
                 55555554677888888777****997776 PP

  == domain 8  score: 3.4 bits;  conditional E-value: 0.06
       PQQ_3  19 vdgglvyvgtgdGtlyAlDaet 40 
                 +d+ +v+ g+ d t+y  D +t
  KOO23928.1 488 ADDSHVVSGSRDRTIYLWDLQT 509
                 3677999999999999888876 PP

  == domain 9  score: -1.2 bits;  conditional E-value: 1.6
       PQQ_3  12 pvnssp......avdgglvyvgtgdGtly 34 
                 +++s++      a dg+ ++ +++dG + 
  KOO23928.1 614 RGHSGAirslkfAPDGRQLVSAGDDGAVL 642
                 44444444447777888888888888875 PP

>> Cytochrom_D1  Cytochrome D1 heme domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.4   0.2    0.0014       2.7      14      72 ..      76     134 ..      39     144 .. 0.86
   2 ?    1.5   0.0     0.044        88       8      77 ..     451     520 ..     421     559 .. 0.78
   3 ?    0.8   0.0     0.072   1.4e+02      40      65 ..     622     647 ..     610     652 .. 0.86

  Alignments for each domain:
  == domain 1  score: 6.4 bits;  conditional E-value: 0.0014
                   GTEEEEEETTT-SEEEEEE-STTEEEE.EE-TT.SSEEEEEETTSEEEEEESSSSSEEEE CS
  Cytochrom_D1  14 agkvalldgdskeilavletgyalHis.rvfasdgRyvyvigRDgkvtliDLwakeivae 72 
                   + +v + d ds +i+ +l+ + +l i  ++ + d+R+++++g D k+   D+ +  iva+
    KOO23928.1  76 NSDVLIWDFDSRQIMYRLQEH-DLGIKlVMISDDERFLLTVGADKKMVAWDMQTGMIVAR 134
                   567888899999999999865.775541688999*****************999888876 PP

  == domain 2  score: 1.5 bits;  conditional E-value: 0.044
                   EEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT.SSEEEEEETTSEEEEEESSSSSEEEEEE-SS CS
  Cytochrom_D1   8 vvverdagkvalldgdskeilavletgyalHisrvfasdgRyvyvigRDgkvtliDLwakeivaevkiGl 77 
                    v   ++g+v++ +  + e + +l+ +    +s     d+ +v   +RD ++ l DL ++   a + + +
    KOO23928.1 451 LVSGGEHGEVRVWEIRTREMIVNLKQHTSAVTSLCLFADDSHVVSGSRDRTIYLWDLQTESRKASLTQRM 520
                   4555567888888888888888888777666665555557788888999999999998887777666544 PP

  == domain 3  score: 0.8 bits;  conditional E-value: 0.072
                   EEE-TT.SSEEEEEETTSEEEEEESS CS
  Cytochrom_D1  40 srvfasdgRyvyvigRDgkvtliDLw 65 
                   s +fa+dgR +  +g Dg v +  ++
    KOO23928.1 622 SLKFAPDGRQLVSAGDDGAVLVWNVF 647
                   889***************99877666 PP

>> Hira  TUP1-like enhancer of split
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.0         3   5.9e+03      67      89 ..      52      74 ..      38      75 .. 0.75
   2 ?    2.6   0.0     0.049        97      13      51 ..     101     139 ..      97     168 .. 0.85
   3 ?    2.0   0.0     0.073   1.4e+02      21      52 ..     362     392 ..     350     402 .. 0.81
   4 ?    1.7   0.0     0.092   1.8e+02      20      46 ..     447     473 ..     436     486 .. 0.75
   5 ?   -2.3   0.0       1.5     3e+03      24      42 ..     493     511 ..     478     520 .. 0.73

  Alignments for each domain:
  == domain 1  score: -3.3 bits;  conditional E-value: 3
        Hira 67 rapavtsasltsnGvpivtlsng 89
                 + +v+ +sl+++G+ iv  ++g
  KOO23928.1 52 HDDHVSCVSLSKSGRYIVSGQHG 74
                5678999999999*999987666 PP

  == domain 2  score: 2.6 bits;  conditional E-value: 0.049
        Hira  13 pasfLessgsyLlavtsvgllyvWnvkkkkvllppvsla 51 
                 ++++++  + +Ll v ++  +  W++++  ++ +++ ++
  KOO23928.1 101 KLVMISDDERFLLTVGADKKMVAWDMQTGMIVARQTGIK 139
                 6677777889*****************999888777665 PP

  == domain 3  score: 2.0 bits;  conditional E-value: 0.073
        Hira  21 gsyLlavtsvgllyvWnvkkkkvllppvslap 52 
                 ++y +  +++g++ +W+v++ +v+    s++ 
  KOO23928.1 362 SEYFATASADGTVRMWDVNTYEVTC-MGSCQT 392
                 567778899*********9999988.666665 PP

  == domain 4  score: 1.7 bits;  conditional E-value: 0.092
        Hira  20 sgsyLlavtsvgllyvWnvkkkkvllp 46 
                 ++++L+   + g++ vW +++++++++
  KOO23928.1 447 NKKFLVSGGEHGEVRVWEIRTREMIVN 473
                 33777777899**********999885 PP

  == domain 5  score: -2.3 bits;  conditional E-value: 1.5
        Hira  24 LlavtsvgllyvWnvkkkk 42 
                 ++  +++ ++y W++++++
  KOO23928.1 493 VVSGSRDRTIYLWDLQTES 511
                 5555677889*****8876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (661 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       436  (0.0243181); expected 358.6 (0.02)
Passed bias filter:                      379  (0.0211389); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.68u 0.27s 00:00:00.95 Elapsed: 00:00:00.45
# Mc/sec: 4403.64
//
Query:       KOO23929.1  [L=639]
Description: glycosyltransferase family 77 protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.1e-31  109.0   0.0    5.5e-31  108.2   0.0    1.4  1  Nucleotid_trans  Nucleotide-diphospho-sugar transferase


Domain annotation for each model (and alignments):
>> Nucleotid_trans  Nucleotide-diphospho-sugar transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  108.2   0.0   3.1e-35   5.5e-31       6     212 .]      28     313 ..      26     313 .. 0.91

  Alignments for each domain:
  == domain 1  score: 108.2 bits;  conditional E-value: 3.1e-35
  Nucleotid_trans   6 llvvAlDeealerckelgvpvlyltskgkdsakkdeefks.ktykkmswrkvrlllellklGynvllsDvDvvWlrnpfpll........kyed 90 
                      +lv+A+D+++ ++  e+++ +l + ++++  +  ++ ++s +++ +++ rk+ +ll +l++G++v+lsDvD vW  +p+p++        ++  
       KOO23929.1  28 VLVAAMDKAVVSMAVEKHFDCLDWSHTATGAD-RQYVRGSfDGFRALGVRKIDALLPVLRAGVHVVLSDVDCVWSSSPLPMFhgqisgfeDFAH 120
                      89******************999999944444.444444437899*************************************9998888777** PP

  Nucleotid_trans  91 aDvlvssDsldgttadelknli.......NsGfffvrateatkallkkwaeelase.sglwDqdvfnlllregaake................. 159
                      aD+lv++D+ d+  +d++++ +       N+G+  vrat+ ++a + +w  +la   +  +Dq++fn+ll    + +                 
       KOO23929.1 121 ADLLVATDCMDPE-DDHRNHGCyhdtvdkNTGVLAVRATPNGIAAMAEWRIRLAVGqKDEQDQTTFNDLLDGNGRGHrwgmdgwqrsefmkfat 213
                      ***********77.888888889*******************************9945555**********998888999************** PP

  Nucleotid_trans 160 .............................................sglkvrvLdtalfvngkgyfvqvrdeeevktkkkpvavhanycsgke.. 206
                                                                    +++v+v++ a+++ g+++fvq  + + ++  k p+avha+y++g++  
       KOO23929.1 214 ewcrrgpkvsrgfnrlwegdaeatsatrhtpgsrrvydvclpnstRHARVGVFPIADVAGGHTFFVQ--QLHTLTG-KWPMAVHATYQFGDQqd 304
                      *******************************************************************..5556665.899*********88767 PP

  Nucleotid_trans 207 ...dKlkrl 212
                         +K++r+
       KOO23929.1 305 ypfGKRQRF 313
                      777777775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (639 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       381  (0.0212505); expected 358.6 (0.02)
Passed bias filter:                      326  (0.0181828); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.56u 0.26s 00:00:00.82 Elapsed: 00:00:00.44
# Mc/sec: 4400.13
//
Query:       KOO23930.1  [L=261]
Description: hypothetical protein Ctob_000334 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.023   15.0   0.0      0.035   14.4   0.0    1.3  1  PDZ       PDZ domain


Domain annotation for each model (and alignments):
>> PDZ  PDZ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.4   0.0     2e-06     0.035      30      80 ..     106     155 ..     101     157 .. 0.80

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 2e-06
                 EEEECTTSHHHHHT.SSTTEEEEEETTEETTTSHHHHHHHHHHTTTSEEEEE CS
         PDZ  30 vsevlpggaaeadg.lkvGDkIlsvNgvdvenvsheeavqaikgskgkvtLt 80 
                 v  + +gg a a+g lk+G  I +vNg++v + s+ +a ++   +  +v+L+
  KOO23930.1 106 VVGLAEGGIALAAGaLKKGMLIKAVNGEPVGSASDAAAKLKAAFP--EVKLL 155
                 5567899*************************9777666555444..67766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (261 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       375  (0.0209158); expected 358.6 (0.02)
Passed bias filter:                      270  (0.0150594); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.24s 00:00:00.64 Elapsed: 00:00:00.39
# Mc/sec: 2030.29
//
Query:       KOO23931.1  [L=285]
Description: hypothetical protein Ctob_000335 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.3e-08   34.5   0.4    7.2e-08   33.4   0.2    1.7  2  Methyltransf_24  Methyltransferase domain


Domain annotation for each model (and alignments):
>> Methyltransf_24  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.4   0.2     4e-12   7.2e-08       2     106 .]      85     191 ..      84     191 .. 0.81
   2 ?   -2.9   0.0      0.79   1.4e+04      21      42 ..     236     255 ..     216     275 .. 0.60

  Alignments for each domain:
  == domain 1  score: 33.4 bits;  conditional E-value: 4e-12
  Methyltransf_24   2 EiGvysGvstlwllralrrngagrlvavdh..dpgaeeaaalareaglddrvrlikadseealasla.....agsiDllfiDgghaaeavledl 88 
                      E Gv  G  t+++l a  +  +   +++d   +p ++++  l++ +++ +r++l ++ds+ +l+++a     ++++D+++iDg+h ++ +++d+
       KOO23931.1  85 ETGVNGGHGTAAMLLANPHLVT---HSFDLgiQPYSRDVFDLLK-LYFGERFNLYVGDSHRTLPQFAanesnHRQCDVILIDGDH-GDGAYDDI 173
                      7788888888888766555544...6666632331334444443.8*************************99***********7.999***** PP

  Methyltransf_24  89 eallprlapggvvlfdDi 106
                      + + p+ a ++ vl+dD+
       KOO23931.1 174 RDFKPLAACHAHVLLDDT 191
                      *****************7 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 0.79
  Methyltransf_24  21 ngagrlvavdhdpgaeeaaala 42 
                         gr +++ ++   ++ a+++
       KOO23931.1 236 KFGGRPHCFNPWG--WAIARYL 255
                      3336667777776..3333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (285 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       340  (0.0189637); expected 358.6 (0.02)
Passed bias filter:                      314  (0.0175135); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.25s 00:00:00.67 Elapsed: 00:00:00.41
# Mc/sec: 2103.99
//
Query:       KOO23932.1  [L=971]
Description: voltage-gated ion channel superfamily [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.6e-23   83.3   1.7    3.6e-23   82.1   1.7    1.6  1  Ion_trans    Ion transport protein
  ------ inclusion threshold ------
      0.018   15.0   1.9      0.046   13.7   1.9    1.7  1  Ion_trans_2  Ion channel
       0.34   10.9   1.6       0.82    9.7   1.6    1.5  1  DUF1664      Protein of unknown function (DUF1664)


Domain annotation for each model (and alignments):
>> Ion_trans  Ion transport protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   82.1   1.7     6e-27   3.6e-23       2     233 ..     259     585 ..     258     591 .. 0.84

  Alignments for each domain:
  == domain 1  score: 82.1 bits;  conditional E-value: 6e-27
                 HHHHHHHHHHHHHHHHHHHCCCSSSSHHHHC.HHHHHHHHHHHHHHHHHHHHHHHH.HTH...........HHHHHHCHSHHHHHHHHHHHHHHHHH.. CS
   Ion_trans   2 svfelfilllillncvflaletyfpedelek.tileilelvftaiftlemllkila.lgl...........likkrYlrdpwnilDflvvlpsllsl.. 85 
                 +++++++l+l+++++++ ++e +f+    e  ++l++l+ v++++f ++++l++++ +++            i++rYl++ w+++D+l++lp+   +  
  KOO23932.1 259 QFWDVLMLCLLFYTATVTPYEVCFMWAGVEPgSPLQVLNAVVNVLFGVDIVLNFFVpYRMpesgylvkshvMIARRYLGS-WFVIDVLSILPVEEMIew 356
                 78************************888889************************7444899999**************.9***********876655 PP

                 .....HHHH.........HHHHHHHHHHHHGGGGGGHHHCHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCC........... CS
   Ion_trans  86 .....vlse.........esllllsvlrlfrvlrllklisrleglrtlvtalirsvkdllnvlllllvvlfifaligvqlfkgklrek........... 159
                      +  +           l ll++++l+r+lr+ ++++r+eg+  + +a  + +k +  v+l ++++++  +l++ ql +++   +           
  KOO23932.1 357 slntlD--RsnldflkmvRMLRLLRLIKLMRILRASRILKRWEGVVPISYAYWELFKWISIVVLTTHWLACSLGLLA-QLADDQRTDAlaagvlarvla 452
                 666551..1455666666679999999999999999999*************************************9.88855555559********** PP

                 .......................................................CC....SCCSTSSSTTTSSSSSS.......HHHHHHHHHHHHTT CS
   Ion_trans 160 .......................................................ne....caktwenpnngntnFdn.......fftallwlfrlmtt 192
                                                                        ++    +a+tw    n++ +++n        + a++ +++ mt+
  KOO23932.1 453 gepadegggdcfgcvrgdtryeafceftscltscevdvlarmelgsepfleqvikKRnairNAQTWICRYNDEGSVRNvdyhgdvWLAAMYVSTVAMTG 551
                 *************************99999999999999999988888877776611556655555555555555555555555478888888887775 PP

                 SSHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
   Ion_trans 193 egwgdilyatldekskvaliyfvifiilgsflllNlliavi 233
                  g g i++ +  e        + +f il++ ++ +++++ i
  KOO23932.1 552 -GVGSIVPENRAEY------AVFCFAILIGSIIWAMVVGTI 585
                 .6*********999......777788888888888888877 PP

>> Ion_trans_2  Ion channel
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   1.9   7.7e-06     0.046      21      77 ..     534     589 ..     515     591 .. 0.78

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 7.7e-06
                  T---HHHHHHHHHHHHTTS----SSTT-----HHHHHHHHHHHHHHHHHHHHHHHHH CS
  Ion_trans_2  21 ekwsfldalYfsfvtltTiGYGdivpetdagrlftivyillGlalfalflavlgkvl 77 
                  ++  +l a+Y s+v   T G G ivpe+ a  ++ ++ il+G ++ a+++ ++  ++
   KOO23932.1 534 HGDVWLAAMYVSTV-AMTGGVGSIVPENRAEYAVFCFAILIGSIIWAMVVGTICAMM 589
                  44556666666655.5566********9997777799*************9998777 PP

>> DUF1664  Protein of unknown function (DUF1664)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   1.6   0.00014      0.82      73     116 ..     890     933 ..     882     935 .. 0.85

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 0.00014
     DUF1664  73 kkldeqkeiskeikeevtevredlseigedvesvkeaveglesk 116
                 ++++  ++   +ik+ev++++ d+++++e++++++++ ++l  k
  KOO23932.1 890 RQQERRQQEGDAIKQEVSSIHVDVRRLNEQMSEMHAMLTQLTRK 933
                 566777777889**************************999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (971 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1118  (0.0623571); expected 358.6 (0.02)
Passed bias filter:                      730  (0.0407162); expected 358.6 (0.02)
Passed Vit filter:                        92  (0.00513135); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.84u 0.32s 00:00:01.15 Elapsed: 00:00:00.47
# Mc/sec: 6229.73
//
Query:       KOO23933.1  [L=853]
Description: hypothetical protein Ctob_000337 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.2e-24   87.1   0.0    1.4e-23   83.6   0.0    2.2  1  His_Phos_1       Histidine phosphatase superfamily (branch 1)
      2e-12   46.8   0.0    1.5e-11   44.0   0.0    2.0  1  Zeta_toxin       Zeta toxin
    5.8e-07   29.8   0.0    1.2e-06   28.7   0.0    1.5  1  AAA_33           AAA domain
     0.0021   18.5   0.0     0.0063   16.9   0.0    1.8  2  AAA_17           AAA domain
  ------ inclusion threshold ------
       0.14   12.4   0.0       0.42   10.9   0.0    1.8  1  AAA_22           AAA domain
       0.14   11.9   0.0       0.27   10.9   0.0    1.4  1  Viral_helicase1  Viral (Superfamily 1) RNA helicase


Domain annotation for each model (and alignments):
>> His_Phos_1  Histidine phosphatase superfamily (branch 1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   83.6   0.0   4.6e-27   1.4e-23       1     184 [.      61     271 ..      61     279 .. 0.86

  Alignments for each domain:
  == domain 1  score: 83.6 bits;  conditional E-value: 4.6e-27
                 EEEEE---BTTB--.....TT----..B-HHHHHHHHHHHHHHTT.S---EE..EE-SSHHHHHHHHHHHHCTT...--EEE-GGGS----GGGTT-B. CS
  His_Phos_1   1 lyLvRHGetewnaegr.lqgrtdvp..LteeGreqAealaerlag.epidai..ysSplkRarqTaeliaealg...lpveldegLrEidfGdwegltt 90 
                 ++LvRHGe+e n ++  ++   d++  Lte+G +q + ++  +++ ++ +++  ++Sp+ RarqT  +i++a +   ++v  +++LrE dfG+++ +  
  KOO23933.1  61 IILVRHGESEGNIDRSaYSTTPDSQiaLTEHGFAQGAVAGLQIRQlIGNETVrfFVSPYLRARQTLLAILRAFDgqtVKVSSEPRLREQDFGNFQSH-- 157
                 79************9887777776666***************999766666688*****************************************77.. PP

                 HHHHHH..HSHHHHHHHHH-GGG-BS-BHHHHHHHHHHHHH......................HHHHHTTTSEEEEEE-HHHHHHHHHHHHT--GGGGG CS
  His_Phos_1  91 aeiaeeypeeleawlrdpadvrppggEsledvaaRvaaale......................elaarhegetvlvVsHggvirallarllglpleelr 167
                  e+ ++  +e ++   ++  +r+p+gE   dv +R+a+++                          a++++e+ ++V+Hg ++r++++ +l++ + e++
  KOO23933.1 158 -EAMRAVLNERQK--FGRFYYRFPNGEAGTDVFDRMASFITylfrtmsdttkgdyfesapeapSSDASTRDENYVLVTHGLLMRIFCMCYLRWTVYEFE 253
                 .444443333333..334447999********************************99998877777888888*************************9 PP

                 GB--.-TT-EEEEEE-SS CS
  His_Phos_1 168 rlel.dnaslsvlefdeg 184
                 ++   +n+++ vle  ++
  KOO23933.1 254 QVWNpSNCEIWVLEKSPQ 271
                 97777*****99987665 PP

>> Zeta_toxin  Zeta toxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.0   0.0     5e-15   1.5e-11      18     186 ..     644     827 ..     632     839 .. 0.80

  Alignments for each domain:
  == domain 1  score: 44.0 bits;  conditional E-value: 5e-15
  Zeta_toxin  18 lillgGqpGAGKselaellkdelerqgnvvrldpDdlRelhPeyeeilk..............adpkkaseltqkdaselvekllqeaiengyniiveg 102
                 + +++G pG+GK ++++   + l  +   +  ++D ++e+     +  +               +    s++ ++++  l  ++ + a+ +g++ii+e 
  KOO23933.1 644 VFIVVGVPGSGKDTVLKRYLRTL--GLPLLDASADLIKEYLAAWGDD-ElsvlvrqnneksgpGKHLLHSQYLHRESILLNHQVADRALAEGRSIILEK 739
                 67899999999999999999999..8888888888888888665331.12234445444433223445799**************************** PP

  Zeta_toxin 103 tlrspdvvkklaealkkaGYevevvvvavkkelSrlgvldRyeeevaegRlvpkeehdeafeglresvealeeek....qldrvkikd 186
                 tl + d v ++a++l+++G +v+++     + + ++++++R +   a gR++ ke+   + ++  + + a+  +     ++d++  +d
  KOO23933.1 740 TLHDADHVLTIANRLAERGCKVHLFGTHITPLTNWKFLRNRMLSGQAFGRFITKEQTVSTLRAYHKHFSAILADPdkraAFDSIHLFD 827
                 ********************************************9666*******999888888877777644433333666666555 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.7   0.0     4e-10   1.2e-06       1     102 [.     644     764 ..     644     805 .. 0.74

  Alignments for each domain:
  == domain 1  score: 28.7 bits;  conditional E-value: 4e-10
      AAA_33   1 lvllvGlpGsGKstlaerllkklgavllssdt..................lrrrlfgtdqqskt...............dytrvldrlyqilnelarka 66 
                 ++++vG+pGsGK t+++r+l+ lg  ll+  +                  +            +               +y + ++ l ++  ++a++a
  KOO23933.1 644 VFIVVGVPGSGKDTVLKRYLRTLGLPLLDASAdlikeylaawgddelsvlV------------RqnneksgpgkhllhsQYLHRESILLNH--QVADRA 728
                 789*********************999988888777666666666544321............0222223335556655666655555554..69**** PP

      AAA_33  67 lsagrnvildatnlsrrerarflklarrlgvpvriv 102
                 l++gr++il  t+ ++++   + + + + g++v++ 
  KOO23933.1 729 LAEGRSIILEKTLHDADHVLTIANRLAERGCKVHLF 764
                 *************99999888888777788877665 PP

>> AAA_17  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.1   0.0         6   1.8e+04      70      86 ..     345     361 ..     327     369 .. 0.71
   2 !   16.9   0.0   2.1e-06    0.0063       1      33 [.     648     680 ..     648     701 .. 0.86

  Alignments for each domain:
  == domain 1  score: -4.1 bits;  conditional E-value: 6
                 HSSEEEEEE-SEEEETT CS
      AAA_17  70 kkkgvlvdghprikeqa 86 
                 ++ ++l+d+  ++ ++a
  KOO23933.1 345 RRANALIDTRRMFTANA 361
                 56789999999996654 PP

  == domain 2  score: 16.9 bits;  conditional E-value: 2.1e-06
                 EE-TTSSHHHHHHHHHHHHTEEEEEHHHHHHHH CS
      AAA_17   1 lGgPGsGKgtqceklvekygfthlsaGdllree 33 
                 +G+PGsGK t++++  + +g++ l a+  l++e
  KOO23933.1 648 VGVPGSGKDTVLKRYLRTLGLPLLDASADLIKE 680
                 7***********************997555444 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   0.00014      0.42       7      91 ..     644     733 ..     640     769 .. 0.59

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00014
      AAA_22   7 ilvvtGesGtGKTtllrrlleqldeeakaee....erpevv..fvtlpsstsskdllrellralglelka.....erlsseell.ealeqalrarav 91 
                 + +v+G +G+GK t+l+r+l++l            ++++++  +  + ++ +++ l r+  ++ g ++k+     + ++++ ll +++++ + a ++
  KOO23933.1 644 VFIVVGVPGSGKDTVLKRYLRTLG------LplldASADLIkeYLAAWGDDELSVLVRQNNEKSG-PGKHllhsqYLHRESILLnHQVADRALAEGR 733
                 679******************993......12234445555433333333344444444444444.2222466666666666666666666555555 PP

>> Viral_helicase1  Viral (Superfamily 1) RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   9.1e-05      0.27       2      23 ..     646     668 ..     645     700 .. 0.78

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 9.1e-05
  Viral_helicase1   2 vvhGvpGcGKStlirkllrts.l 23 
                      +v GvpG+GK t++++ lrt  l
       KOO23933.1 646 IVVGVPGSGKDTVLKRYLRTLgL 668
                      799****************9432 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (853 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       562  (0.0313459); expected 358.6 (0.02)
Passed bias filter:                      522  (0.0291148); expected 358.6 (0.02)
Passed Vit filter:                        71  (0.00396006); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.73u 0.28s 00:00:01.01 Elapsed: 00:00:00.46
# Mc/sec: 5524.31
//
Query:       KOO23934.1  [L=442]
Description: hypothetical protein Ctob_000330 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (442 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       290  (0.0161749); expected 358.6 (0.02)
Passed bias filter:                      233  (0.0129957); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.50u 0.23s 00:00:00.73 Elapsed: 00:00:00.42
# Mc/sec: 3141.33
//
Query:       KOO23935.1  [L=661]
Description: hypothetical protein Ctob_000331 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.3e-10   41.2   0.1      0.036   14.1   0.0    4.6  4  DUF3421        Protein of unknown function (DUF3421)
     0.0034   17.0   0.1       0.07   12.8   0.0    2.7  2  Cupin_3        Protein of unknown function (DUF861)
  ------ inclusion threshold ------
      0.023   14.5   0.4      0.039   13.8   0.4    1.2  1  Synaptobrevin  Synaptobrevin
      0.024   14.4   0.2         14    5.6   0.0    3.1  2  LPD23          Large polyvalent protein associated domain 23
      0.036   14.5   0.8         13    6.3   0.1    2.5  2  PhoR           Phosphate regulon sensor protein PhoR


Domain annotation for each model (and alignments):
>> DUF3421  Protein of unknown function (DUF3421)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.3   0.0   0.00015      0.54      20      57 ..      84     121 ..      72     126 .. 0.85
   2 !    7.9   0.0   0.00082         3      20      49 ..     158     190 ..     149     205 .. 0.80
   3 !   14.1   0.0     1e-05     0.036       6      58 ..     238     287 ..     234     293 .. 0.83
   4 ?    2.7   0.0     0.033   1.2e+02      20      48 ..     320     350 ..     316     376 .. 0.87

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.00015
                 EEEE-TTSSSEEEEETTEEEEESEEEEEETTSB-EEEE CS
     DUF3421  20 pgkvvpekkaayvsyggkehekseyevLvakdpseleW 57 
                 +gk+  ++++a+v+ +gke++++eye L+    s+ +W
  KOO23935.1  84 VGKFNSRSGKATVALHGKEINVNEYEFLTLRPGSSASW 121
                 699*************************9434566666 PP

  == domain 2  score: 7.9 bits;  conditional E-value: 0.00082
                 EEEE-TTSSSEEEEETTEEEEES..EEEEEE.T CS
     DUF3421  20 pgkvvpekkaayvsyggkeheks..eyevLv.a 49 
                 pgk+++++++++v++ gk ++++  e e L+ +
  KOO23935.1 158 PGKYIADESSCCVTHAGKVVTLKeaEIEFLIiE 190
                 9*******************9975677778742 PP

  == domain 3  score: 14.1 bits;  conditional E-value: 1e-05
                 EEEEEEEEETTEEEEEEE-TTSSSEEEEETTEEEEESEEEEEETTSB-EEEEE CS
     DUF3421   6 piYvgRakhegsvlpgkvvpekkaayvsyggkehekseyevLvakdpseleWv 58 
                 +++v Ra        gk+v  +++a+v+ +g+e ++++ye Lv   + ++ W 
  KOO23935.1 238 RMFVVRAAN---GEAGKFVVGEGVASVALNGREQTVDDYEFLVLAPDVRYAWS 287
                 567777662...336****************************5578899995 PP

  == domain 4  score: 2.7 bits;  conditional E-value: 0.033
                 EEEE-TTSSSEEEEETTEEEEES..EEEEEE CS
     DUF3421  20 pgkvvpekkaayvsyggkeheks..eyevLv 48 
                 pgk+  ++++a+++  gke++++  eye L 
  KOO23935.1 320 PGKYLVDEQKARIAQLGKEVTLEvgEYEFLS 350
                 9******************999666999997 PP

>> Cupin_3  Protein of unknown function (DUF861)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.8   0.0     2e-05      0.07      33      68 ..      91     125 ..      90     127 .. 0.94
   2 ?    0.4   0.1      0.14   5.2e+02      31      67 ..     254     289 ..     244     291 .. 0.84

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 2e-05
                 ECEEEEEETTTEEEEEETTEEEEE-TTEEECCCEEE CS
     Cupin_3  33 eGevkvtpeggetvelraGDlvvlpkglsgtwdvse 68 
                 +G+ +v+  +g+++ + ++ +++l++g+s+ w+v +
  KOO23935.1  91 SGKATVAL-HGKEINVNEYEFLTLRPGSSASWRVVF 125
                 79999999.************************976 PP

  == domain 2  score: 0.4 bits;  conditional E-value: 0.14
                 EEECEEEEEETTTEEEEEETTEEEEE-TTEEECCCEE CS
     Cupin_3  31 ileGevkvtpeggetvelraGDlvvlpkglsgtwdvs 67 
                 + eG  +v+  +g + +++ + ++vl ++ + +w v 
  KOO23935.1 254 VGEGVASVAL-NGREQTVDDYEFLVLAPDVRYAWSVE 289
                 4467777777.99999***************999985 PP

>> Synaptobrevin  Synaptobrevin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.4   1.1e-05     0.039      28      60 ..     616     648 ..     613     650 .. 0.93

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 1.1e-05
                    CCCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHH CS
  Synaptobrevin  28 ergekldeLvdktenLqssaqqFkkqarklkrk 60 
                    +rgekl+   + +e+L+++a++F   a++l+++
     KOO23935.1 616 ARGEKLSAAAQAAEKLSNEAETFADLATQLRKA 648
                    7*****************************985 PP

>> LPD23  Large polyvalent protein associated domain 23
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.6   0.0    0.0038        14      35      48 ..     444     457 ..     443     458 .. 0.94
   2 ?    5.4   0.1    0.0043        15      35      48 ..     565     578 ..     564     579 .. 0.94

  Alignments for each domain:
  == domain 1  score: 5.6 bits;  conditional E-value: 0.0038
       LPD23  35 eTGWfrgkDgkWrF 48 
                 +TGW    D kW++
  KOO23935.1 444 ATGWVVREDPKWKY 457
                 6************8 PP

  == domain 2  score: 5.4 bits;  conditional E-value: 0.0043
       LPD23  35 eTGWfrgkDgkWrF 48 
                 +TGW    D kW++
  KOO23935.1 565 TTGWVVREDPKWKY 578
                 6************8 PP

>> PhoR  Phosphate regulon sensor protein PhoR
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.2   0.1    0.0039        14      56      80 ..     412     436 ..     409     439 .. 0.88
   2 ?    6.3   0.1    0.0037        13      56      80 ..     533     557 ..     529     560 .. 0.88

  Alignments for each domain:
  == domain 1  score: 6.2 bits;  conditional E-value: 0.0039
        PhoR  56 kklepPdgsGlWeeifdglyrlqkr 80 
                 +k+ +P+g G W+  +dg +r+  r
  KOO23935.1 412 RKKGYPEGVGCWGVGYDGHHRYMAR 436
                 66789****************9987 PP

  == domain 2  score: 6.3 bits;  conditional E-value: 0.0037
        PhoR  56 kklepPdgsGlWeeifdglyrlqkr 80 
                 +k+ +P+g G W+  +dg +r+  r
  KOO23935.1 533 RKKGYPEGVGCWGVGYDGHHRYMAR 557
                 67789****************9987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (661 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       414  (0.0230911); expected 358.6 (0.02)
Passed bias filter:                      377  (0.0210274); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.56u 0.25s 00:00:00.81 Elapsed: 00:00:00.40
# Mc/sec: 4905.53
//
Query:       KOO23936.1  [L=175]
Description: centrin [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.6e-33  111.7  11.0    4.3e-09   35.3   0.0    4.2  4  EF-hand_1        EF hand
    9.3e-30  102.9   8.5    1.5e-16   60.6   0.4    2.2  2  EF-hand_7        EF-hand domain pair
    9.7e-26   87.5   9.6    2.5e-09   36.3   0.0    4.9  6  EF-hand_6        EF-hand domain
    1.1e-25   89.2  11.0    5.3e-12   45.4   0.3    4.0  4  EF-hand_8        EF-hand domain pair
    3.5e-20   70.5   8.5      2e-06   27.0   0.2    4.8  5  EF-hand_5        EF hand
    5.6e-14   52.2   0.2    7.6e-08   32.6   0.1    2.1  2  EF-hand_9        EF-hand domain
    2.5e-06   27.4   4.0       0.19   11.7   0.8    3.6  4  EF-hand_4        Cytoskeletal-regulatory complex EF hand
    0.00011   22.0   0.8        0.4   10.4   0.1    2.1  2  SurA_N_3         SurA N-terminal domain
    0.00041   20.3   1.0        3.5    7.5   0.0    3.7  4  Caleosin         Caleosin related protein
     0.0008   19.3   0.7       0.73    9.7   0.0    2.3  2  SurA_N_2         SurA N-terminal domain
     0.0021   18.4   0.4        1.3    9.4   0.2    2.1  2  SPARC_Ca_bdg     Secreted protein acidic and rich in cysteine
     0.0037   17.6   0.7        1.5    9.2   0.1    2.3  2  EF-hand_14       EF-hand domain
  ------ inclusion threshold ------
      0.011   15.5   1.3      0.024   14.5   0.4    1.9  2  SUB1_ProdP9      SUB1 protease Prodomain ProdP9
      0.023   14.8   0.2      0.023   14.8   0.2    3.0  3  DUF3008          Protein of unknwon function (DUF3008)
      0.042   13.2   0.8       0.13   11.6   0.7    1.9  2  LETM1            LETM1-like protein
       0.07   13.2   1.7        3.2    7.9   0.1    2.8  3  YolD             YolD-like protein
      0.079   12.6   0.2        1.7    8.3   0.0    2.4  3  Peptidase_M24    Metallopeptidase family M24
        0.1   12.8   0.2         22    5.4   0.0    4.4  6  PMBR             Pseudomurein-binding repeat
       0.13   12.7   0.4        1.1    9.8   0.1    2.4  2  Acetyltransf_11  Udp N-acetylglucosamine O-acyltransferase; D
       0.16   12.1   1.5        0.6   10.3   0.5    2.3  3  DUF3911          Protein of unknown function (DUF3911)
       0.24   11.8   1.7        5.1    7.5   0.1    2.9  2  DUF3486          Protein of unknown function (DUF3486)
        1.1    9.3   5.9        3.2    7.9   0.2    2.7  2  SapB_1           Saposin-like type B, region 1


Domain annotation for each model (and alignments):
>> EF-hand_1  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.3   0.0   5.3e-12   4.3e-09       1      29 []      25      53 ..      25      53 .. 0.96
   2 !   29.0   0.1   5.3e-10   4.3e-07       1      27 [.      61      87 ..      61      89 .. 0.95
   3 !   21.9   0.3   9.8e-08     8e-05       1      28 [.      98     125 ..      98     126 .. 0.91
   4 !   30.9   0.5   1.3e-10   1.1e-07       1      28 [.     134     161 ..     134     162 .. 0.96

  Alignments for each domain:
  == domain 1  score: 35.3 bits;  conditional E-value: 5.3e-12
                HHHHHHHHHTTTSSSEEEHHHHHHHHHHH CS
   EF-hand_1  1 elkeiFrefDkDgdGkIdfeEfkellkkl 29
                e++e+F++fD+D++G Id+ E+k+++++l
  KOO23936.1 25 EIREAFNLFDTDHSGSIDYRELKAAMRAL 53
                79************************985 PP

  == domain 2  score: 29.0 bits;  conditional E-value: 5.3e-10
                HHHHHHHHHTTTSSSEEEHHHHHHHHH CS
   EF-hand_1  1 elkeiFrefDkDgdGkIdfeEfkellk 27
                el++++ ++D Dg+G+I+f Ef+e+++
  KOO23936.1 61 ELRKMITDIDADGSGHIEFPEFLEMMT 87
                79************************8 PP

  == domain 3  score: 21.9 bits;  conditional E-value: 9.8e-08
                 HHHHHHHHHTTTSSSEEEHHHHHHHHHH CS
   EF-hand_1   1 elkeiFrefDkDgdGkIdfeEfkellkk 28 
                 e+ ++F++fD D +GkI+f+ +k++ k+
  KOO23936.1  98 EILKVFKLFDDDSTGKISFKNLKRVAKE 125
                 6889*******************99876 PP

  == domain 4  score: 30.9 bits;  conditional E-value: 1.3e-10
                 HHHHHHHHHTTTSSSEEEHHHHHHHHHH CS
   EF-hand_1   1 elkeiFrefDkDgdGkIdfeEfkellkk 28 
                 el+++++ +D+DgdG I+ +Ef +++kk
  KOO23936.1 134 ELQDMIDQADRDGDGEINPDEFYRIMKK 161
                 799***********************97 PP

>> EF-hand_7  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.6   0.4   1.8e-19   1.5e-16       2      70 ..      24      86 ..      23      87 .. 0.97
   2 !   46.1   2.5   5.9e-15   4.8e-12       2      71 .]      97     160 ..      96     160 .. 0.97

  Alignments for each domain:
  == domain 1  score: 60.6 bits;  conditional E-value: 1.8e-19
   EF-hand_7  2 eklkeaFkelDtdgdgyldkeellrllrkifqgagegsklsdeelellfkefDtdkdGvisfdEFlkly 70
                e+++eaF+++Dtd++g++d++el+ ++r        g+++ +eel++++ ++D d++G i f EFl+++
  KOO23936.1 24 EEIREAFNLFDTDHSGSIDYRELKAAMR------ALGFEVKKEELRKMITDIDADGSGHIEFPEFLEMM 86
                789*************************......9********************************99 PP

  == domain 2  score: 46.1 bits;  conditional E-value: 5.9e-15
   EF-hand_7   2 eklkeaFkelDtdgdgyldkeellrllrkifqgagegsklsdeelellfkefDtdkdGvisfdEFlklyr 71 
                 e++  +Fk++D d +g+++   l+r+ +      + g+++++eel+++++  D d+dG+i+ dEF+++++
  KOO23936.1  97 EEILKVFKLFDDDSTGKISFKNLKRVAK------ELGENMTEEELQDMIDQADRDGDGEINPDEFYRIMK 160
                 78999***********************......*********************************996 PP

>> EF-hand_6  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.3   0.0   3.1e-12   2.5e-09       1      31 []      25      54 ..      25      54 .. 0.96
   2 ?   -0.6   0.0       2.1   1.7e+03      19      27 ..      59      67 ..      56      68 .. 0.82
   3 !   12.8   0.0   0.00011     0.089       2      27 ..      62      87 ..      61      91 .. 0.85
   4 !   20.9   0.2   2.7e-07   0.00022       1      31 []      98     127 ..      98     127 .. 0.90
   5 ?   -0.4   0.0       1.8   1.4e+03      18      27 ..     131     140 ..     130     141 .. 0.83
   6 !   20.4   0.3   3.9e-07   0.00032       2      28 ..     135     161 ..     134     172 .. 0.86

  Alignments for each domain:
  == domain 1  score: 36.3 bits;  conditional E-value: 3.1e-12
   EF-hand_6  1 elreaFklfDkdgdGkidaeElrkalrkalg 31
                e+reaF+lfD+d++G+id+ El++a+r alg
  KOO23936.1 25 EIREAFNLFDTDHSGSIDYRELKAAMR-ALG 54
                79*************************.887 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 2.1
   EF-hand_6 19 aeElrkalr 27
                +eElrk+++
  KOO23936.1 59 KEELRKMIT 67
                79****997 PP

  == domain 3  score: 12.8 bits;  conditional E-value: 0.00011
   EF-hand_6  2 lreaFklfDkdgdGkidaeElrkalr 27
                lr+    +D dg+G+i + E+  +++
  KOO23936.1 62 LRKMITDIDADGSGHIEFPEFLEMMT 87
                66666779***************998 PP

  == domain 4  score: 20.9 bits;  conditional E-value: 2.7e-07
   EF-hand_6   1 elreaFklfDkdgdGkidaeElrkalrkalg 31 
                 e+ ++FklfD d +Gki+++ l+++ + +lg
  KOO23936.1  98 EILKVFKLFDDDSTGKISFKNLKRVAK-ELG 127
                 5789*******************9988.665 PP

  == domain 5  score: -0.4 bits;  conditional E-value: 1.8
   EF-hand_6  18 daeElrkalr 27 
                 + eEl++++ 
  KOO23936.1 131 TEEELQDMID 140
                 899***9985 PP

  == domain 6  score: 20.4 bits;  conditional E-value: 3.9e-07
   EF-hand_6   2 lreaFklfDkdgdGkidaeElrkalrk 28 
                 l++  ++ D+dgdG+i+++E+ ++++k
  KOO23936.1 135 LQDMIDQADRDGDGEINPDEFYRIMKK 161
                 67777899*****************95 PP

>> EF-hand_8  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.8   0.1   3.2e-07   0.00026      26      52 ..      24      50 ..       7      50 .. 0.79
   2 !   37.1   0.2   2.5e-12   2.1e-09       1      53 [.      37      87 ..      37      89 .. 0.96
   3 !    9.1   0.3    0.0014       1.1      24      46 ..      95     117 ..      86     118 .. 0.85
   4 !   45.4   0.3   6.5e-15   5.3e-12       2      55 .]     111     162 ..     110     162 .. 0.95

  Alignments for each domain:
  == domain 1  score: 20.8 bits;  conditional E-value: 3.2e-07
   EF-hand_8 26 eevdilfrefDtdgdGkisfeEFcvll 52
                ee+++ f++fDtd++G i++ E  + +
  KOO23936.1 24 EEIREAFNLFDTDHSGSIDYRELKAAM 50
                578889***************998765 PP

  == domain 2  score: 37.1 bits;  conditional E-value: 2.5e-12
   EF-hand_8  1 ekgkItreelrrilrilglkkglseeevdilfrefDtdgdGkisfeEFcvlle 53
                ++g+I+  el+ ++r+lg +  + +ee++ ++  +D dg+G+i f EF+++++
  KOO23936.1 37 HSGSIDYRELKAAMRALGFE--VKKEELRKMITDIDADGSGHIEFPEFLEMMT 87
                689*****************..*****************************95 PP

  == domain 3  score: 9.1 bits;  conditional E-value: 0.0014
   EF-hand_8  24 seeevdilfrefDtdgdGkisfe 46 
                 ++ee+  +f++fD d  Gkisf+
  KOO23936.1  95 TKEEILKVFKLFDDDSTGKISFK 117
                 78899999*************96 PP

  == domain 4  score: 45.4 bits;  conditional E-value: 6.5e-15
   EF-hand_8   2 kgkItreelrrilrilglkkglseeevdilfrefDtdgdGkisfeEFcvllerr 55 
                 +gkI++ +l+r ++ lg +  ++eee++++++ +D+dgdG i+ +EF+  +++r
  KOO23936.1 111 TGKISFKNLKRVAKELGEN--MTEEELQDMIDQADRDGDGEINPDEFYRIMKKR 162
                 8**********99999*99..***************************999885 PP

>> EF-hand_5  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.9   0.0     1e-07   8.4e-05       1      23 [.      26      48 ..      26      50 .. 0.90
   2 ?   -1.0   0.0       1.7   1.4e+03      18      24 ..      59      65 ..      59      66 .. 0.84
   3 !   16.3   0.0   6.1e-06     0.005       6      25 .]      67      86 ..      62      86 .. 0.84
   4 !    7.4   0.2    0.0039       3.2       3      23 ..     101     121 ..      99     123 .. 0.84
   5 !   27.0   0.2   2.5e-09     2e-06       1      25 []     135     159 ..     135     159 .. 0.94

  Alignments for each domain:
  == domain 1  score: 21.9 bits;  conditional E-value: 1e-07
                HHHHHHHH-SS-SSCE-HHHHHH CS
   EF-hand_5  1 lkdtFqaiDlNgDGkIskeELkt 23
                ++++F+ +D++++G I+  ELk+
  KOO23936.1 26 IREAFNLFDTDHSGSIDYRELKA 48
                5778*****************97 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 1.7
                HHHHHHH CS
   EF-hand_5 18 keELktl 24
                keEL+++
  KOO23936.1 59 KEELRKM 65
                79**997 PP

  == domain 3  score: 16.3 bits;  conditional E-value: 6.1e-06
                HHH-SS-SSCE-HHHHHHHH CS
   EF-hand_5  6 qaiDlNgDGkIskeELktlv 25
                  iD++g+G+I + E+ +++
  KOO23936.1 67 TDIDADGSGHIEFPEFLEMM 86
                579*************9986 PP

  == domain 4  score: 7.4 bits;  conditional E-value: 0.0039
                 HHHHHH-SS-SSCE-HHHHHH CS
   EF-hand_5   3 dtFqaiDlNgDGkIskeELkt 23 
                 ++F+ +D +  GkIs+  Lk+
  KOO23936.1 101 KVFKLFDDDSTGKISFKNLKR 121
                 68*************976665 PP

  == domain 5  score: 27.0 bits;  conditional E-value: 2.5e-09
                 HHHHHHHH-SS-SSCE-HHHHHHHH CS
   EF-hand_5   1 lkdtFqaiDlNgDGkIskeELktlv 25 
                 l+d+ +++D +gDG I+++E+++++
  KOO23936.1 135 LQDMIDQADRDGDGEINPDEFYRIM 159
                 7999******************976 PP

>> EF-hand_9  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.8   0.0   3.9e-06    0.0032       3      63 ..      29      87 ..      27      90 .. 0.93
   2 !   32.6   0.1   9.4e-11   7.6e-08       3      64 ..     102     161 ..     101     162 .. 0.93

  Alignments for each domain:
  == domain 1  score: 17.8 bits;  conditional E-value: 3.9e-06
   EF-hand_9  3 vFevcDtqktGrVpvsrlidyLravtaqdpeeseLeelakelDPdgedasvdldtflrvmr 63
                 F+++Dt+  G +   +l++ +ra +  + +  eL +    +D dg  + +++  fl++m 
  KOO23936.1 29 AFNLFDTDHSGSIDYRELKAAMRALGF-EVKKEELRKMITDIDADGS-GHIEFPEFLEMMT 87
                5**************************.788889*************.**********996 PP

  == domain 2  score: 32.6 bits;  conditional E-value: 9.4e-11
   EF-hand_9   3 vFevcDtqktGrVpvsrlidyLravtaqdpeeseLeelakelDPdgedasvdldtflrvmre 64 
                 vF+++D ++tG++  ++l+ + +  ++++ +e eL++   ++D dg  ++++ d f r+m++
  KOO23936.1 102 VFKLFDDDSTGKISFKNLKRVAKELGENM-TEEELQDMIDQADRDGD-GEINPDEFYRIMKK 161
                 7**************************66.5669************9.************97 PP

>> EF-hand_4  Cytoskeletal-regulatory complex EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.0   0.0   0.00081      0.66      40      72 ..      18      53 ..      10      64 .. 0.76
   2 ?    5.1   0.0     0.025        21      41      69 ..      58      86 ..      53      90 .. 0.76
   3 ?    2.2   0.1      0.22   1.8e+02      42      64 ..      96     118 ..      75     126 .. 0.86
   4 !   11.7   0.8   0.00023      0.19       8      70 ..      98     160 ..      91     165 .. 0.73

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.00081
   EF-hand_4 40 leedkleki...wdladidedgkldfeefciamrli 72
                l+e+++e+i   ++l d d+ g++d+ e+  amr +
  KOO23936.1 18 LSEEQIEEIreaFNLFDTDHSGSIDYRELKAAMRAL 53
                66666666533378*******************954 PP

  == domain 2  score: 5.1 bits;  conditional E-value: 0.025
   EF-hand_4 41 eedklekiwdladidedgkldfeefciam 69
                ++++l k+ +  d d  g+++f ef  +m
  KOO23936.1 58 KKEELRKMITDIDADGSGHIEFPEFLEMM 86
                6677778766666677789******8776 PP

  == domain 3  score: 2.2 bits;  conditional E-value: 0.22
   EF-hand_4  42 edklekiwdladidedgkldfee 64 
                 ++++ k+++l d d+ gk+ f++
  KOO23936.1  96 KEEILKVFKLFDDDSTGKISFKN 118
                 56788999**********99986 PP

  == domain 4  score: 11.7 bits;  conditional E-value: 0.00023
   EF-hand_4   8 eikkyweifsglkpednkltgdkvapvlkn..skleedklekiwdladidedgkldfeefciamr 70 
                 ei k +++f   +    k++ +++  v k+   +++e++l+ + d ad d dg+++ +ef  +m+
  KOO23936.1  98 EILKVFKLFDDDS--TGKISFKNLKRVAKElgENMTEEELQDMIDQADRDGDGEINPDEFYRIMK 160
                 5666666665444..3455555555555542268999***********************99987 PP

>> SurA_N_3  SurA N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.2   0.0   0.00058      0.47      89     121 ..      38      70 ..      12      76 .. 0.83
   2 !   10.4   0.1    0.0005       0.4      67     144 ..      88     165 ..      78     168 .. 0.78

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.00058
    SurA_N_3  89 dqlidealllqeakklglsvsdeevakeiasip 121
                 +  id + l+++++ lg++v++ee++k+i++i+
  KOO23936.1  38 SGSIDYRELKAAMRALGFEVKKEELRKMITDID 70 
                 66799999*********************9997 PP

  == domain 2  score: 10.4 bits;  conditional E-value: 0.0005
    SurA_N_3  67 qqlgg.nldaelldelglrqqvldqlidealllqeakklglsvsdeevakeiasipaFq.edGkFdkerYkqlLaanglt 144
                  ++g+ + ++e l+  +l ++     i+ + l+  ak+lg ++++ee++++i + +  +  dG+ +++++ ++++++g +
  KOO23936.1  88 GKMGEkDTKEEILKVFKLFDDDSTGKISFKNLKRVAKELGENMTEEELQDMIDQAD--RdGDGEINPDEFYRIMKKRGDN 165
                 4555523444444447777777888899999*********************9988..6469**********99998865 PP

>> Caleosin  Caleosin related protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.5   0.0    0.0043       3.5      10      37 ..      30      57 ..      22      66 .. 0.89
   2 ?    2.6   0.0      0.14   1.1e+02      93     132 ..      60      99 ..      56     106 .. 0.82
   3 ?    1.7   0.0      0.27   2.2e+02      10      37 ..     103     130 ..      95     139 .. 0.68
   4 ?    5.9   0.1     0.013        11       5      32 ..     134     161 ..     130     168 .. 0.82

  Alignments for each domain:
  == domain 1  score: 7.5 bits;  conditional E-value: 0.0043
    Caleosin 10 vaFfDrdkdGiiypldtyrgfralgfnv 37
                ++ fD+d+ G i   +   ++ralgf+v
  KOO23936.1 30 FNLFDTDHSGSIDYRELKAAMRALGFEV 57
                578***********************97 PP

  == domain 2  score: 2.6 bits;  conditional E-value: 0.14
    Caleosin  93 qkfeeifskyakekkdaltlkevlellkgqrealDlfgwl 132
                 +++ ++ +  +++ ++++++ e+le+++g++  +D+   +
  KOO23936.1  60 EELRKMITDIDADGSGHIEFPEFLEMMTGKMGEKDTKEEI 99 
                 667788889999999**************99999987655 PP

  == domain 3  score: 1.7 bits;  conditional E-value: 0.27
    Caleosin  10 vaFfDrdkdGiiypldtyrgfralgfnv 37 
                 ++ fD d+ G i + +  r  ++lg n+
  KOO23936.1 103 FKLFDDDSTGKISFKNLKRVAKELGENM 130
                 4557777777777777666666666655 PP

  == domain 4  score: 5.9 bits;  conditional E-value: 0.013
    Caleosin   5 vLqqHvaFfDrdkdGiiypldtyrgfra 32 
                  Lq  ++  Drd dG i p + yr +++
  KOO23936.1 134 ELQDMIDQADRDGDGEINPDEFYRIMKK 161
                 688888888*************997766 PP

>> SurA_N_2  SurA N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.7   0.0   0.00089      0.73      94     122 ..      41      69 ..      22      99 .. 0.83
   2 !    8.5   0.3     0.002       1.7      95     124 ..     115     144 ..      78     159 .. 0.82

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 0.00089
    SurA_N_2  94 vseklleqeaeklGltvsdeelqdaiqgn 122
                 ++ + l+ +++ lG++v +eel+++i+ +
  KOO23936.1  41 IDYRELKAAMRALGFEVKKEELRKMITDI 69 
                 66677999******************983 PP

  == domain 2  score: 8.5 bits;  conditional E-value: 0.002
    SurA_N_2  95 seklleqeaeklGltvsdeelqdaiqgnpa 124
                 s k l+  a++lG ++++eelqd+i +   
  KOO23936.1 115 SFKNLKRVAKELGENMTEEELQDMIDQADR 144
                 55668899*****************99655 PP

>> SPARC_Ca_bdg  Secreted protein acidic and rich in cysteine Ca binding region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.5   0.0    0.0062       5.1      48     111 ..      18      83 ..       5      85 .. 0.76
   2 !    9.4   0.2    0.0016       1.3      50     111 ..      93     156 ..      84     158 .. 0.86

  Alignments for each domain:
  == domain 1  score: 7.5 bits;  conditional E-value: 0.0062
  SPARC_Ca_bdg  48 nlkeckepvawkFsklDtnsdkvlsksELaplrapl...vklehCikpflescDadkdkkislkEwc 111
                    ++e  e+++  F+ +Dt++ ++++ +EL++    l   vk  +  +++++  Dad  ++i+  E+ 
    KOO23936.1  18 LSEEQIEEIREAFNLFDTDHSGSIDYRELKAAMRALgfeVK-KEELRKMITDIDADGSGHIEFPEFL 83 
                   456677889999*****************876555533223.3447788999999999999999886 PP

  == domain 2  score: 9.4 bits;  conditional E-value: 0.0016
  SPARC_Ca_bdg  50 keckepvawkFsklDtnsdkvlsksELaplrapl..vklehCikpflescDadkdkkislkEwc 111
                   k +ke++   F+ +D +s + +s + L+ + ++l    +e+  + +++++D d d++i+  E+ 
    KOO23936.1  93 KDTKEEILKVFKLFDDDSTGKISFKNLKRVAKELgeNMTEEELQDMIDQADRDGDGEINPDEFY 156
                   5567888889999*******************99333469999******************996 PP

>> EF-hand_14  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.8   0.0     0.011       8.6       6      46 ..      30      70 ..      27      89 .. 0.90
   2 !    9.2   0.1    0.0019       1.5       5      45 ..     102     142 ..      98     162 .. 0.89

  Alignments for each domain:
  == domain 1  score: 6.8 bits;  conditional E-value: 0.011
  EF-hand_14  6 fdlfkdeetdklsvakllkaLaetGirkdDpRLkellkklk 46
                f+lf++++++++   +l +a+++ G + +   L+++++ + 
  KOO23936.1 30 FNLFDTDHSGSIDYRELKAAMRALGFEVKKEELRKMITDID 70
                9*************************999999999998775 PP

  == domain 2  score: 9.2 bits;  conditional E-value: 0.0019
  EF-hand_14   5 lfdlfkdeetdklsvakllkaLaetGirkdDpRLkellkkl 45 
                 +f+lf+d++t+k+s+++l ++ +e G + +   L++++++ 
  KOO23936.1 102 VFKLFDDDSTGKISFKNLKRVAKELGENMTEEELQDMIDQA 142
                 8*************************999999999998875 PP

>> SUB1_ProdP9  SUB1 protease Prodomain ProdP9
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.0       2.1   1.7e+03      40      64 ..      61      86 ..      50     102 .. 0.69
   2 ?   14.5   0.4   2.9e-05     0.024      30      68 ..     109     146 ..      96     155 .. 0.86

  Alignments for each domain:
  == domain 1  score: -1.1 bits;  conditional E-value: 2.1
  SUB1_ProdP9 40 nlksiiielkedttde.elieyikil 64
                 +l+ +i +++ d + + e+ e+++++
   KOO23936.1 61 ELRKMITDIDADGSGHiEFPEFLEMM 86
                 56778888777754332555555555 PP

  == domain 2  score: 14.5 bits;  conditional E-value: 2.9e-05
  SUB1_ProdP9  30 eskGklanlknlksiiielkedttdeelieyikileekG 68 
                  +s Gk++ +knlk +  el e++t+eel + i+  ++ G
   KOO23936.1 109 DSTGKIS-FKNLKRVAKELGENMTEEELQDMIDQADRDG 146
                  5788886.8**********************99888877 PP

>> DUF3008  Protein of unknwon function (DUF3008)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.1       6.7   5.5e+03      18      24 ..      10      16 ..       4      26 .. 0.52
   2 ?    0.8   0.0      0.67   5.5e+02      19      45 ..      39      65 ..      37      70 .. 0.84
   3 ?   14.8   0.2   2.9e-05     0.023      19      46 ..     112     139 ..     110     147 .. 0.86

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 6.7
     DUF3008 18 rGetkks 24
                +G+ kk 
  KOO23936.1 10 KGKAKKP 16
                4444444 PP

  == domain 2  score: 0.8 bits;  conditional E-value: 0.67
     DUF3008 19 GetkkseLkgaSksMyesMsekeLeel 45
                G  + +eLk a + +     ++eL+++
  KOO23936.1 39 GSIDYRELKAAMRALGFEVKKEELRKM 65
                666778999999999999999999998 PP

  == domain 3  score: 14.8 bits;  conditional E-value: 2.9e-05
     DUF3008  19 GetkkseLkgaSksMyesMsekeLeelA 46 
                 G+ + ++Lk  +k++ e M+e+eL+++ 
  KOO23936.1 112 GKISFKNLKRVAKELGENMTEEELQDMI 139
                 777889********************96 PP

>> LETM1  LETM1-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.0      0.91   7.4e+02     211     246 ..      32      64 ..      15      68 .. 0.62
   2 ?   11.6   0.7   0.00016      0.13     128     173 ..      73     121 ..      42     140 .. 0.70

  Alignments for each domain:
  == domain 1  score: -0.7 bits;  conditional E-value: 0.91
       LETM1 211 aikreGvdsLseeeLqeacrsRGlraaglseeelre 246
                 + + +   s++ +eL+ a r+ G+   ++++eelr+
  KOO23936.1  32 LFDTDHSGSIDYRELKAAMRALGF---EVKKEELRK 64 
                 445555567777777777666666...466666665 PP

  == domain 2  score: 11.6 bits;  conditional E-value: 0.00016
       LETM1 128 kekaeelkeflkkvrsggepeevsneeilkvaklFkde....ltLdnlsr 173
                  + + e+ efl+ +  +   e+ ++eeilkv klF+d+    ++++nl+r
  KOO23936.1  73 GSGHIEFPEFLEMMTGKM-GEKDTKEEILKVFKLFDDDstgkISFKNLKR 121
                 346778889998876554.5688**************9544445555554 PP

>> YolD  YolD-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.9   0.1     0.004       3.2      16      35 ..      10      29 ..       7      67 .. 0.90
   2 ?    3.9   0.0     0.066        54      56      93 ..      83     122 ..      80     123 .. 0.89
   3 ?   -2.0   0.2       4.7   3.9e+03       7      34 ..     133     160 ..     131     161 .. 0.74

  Alignments for each domain:
  == domain 1  score: 7.9 bits;  conditional E-value: 0.004
        YolD 16 qkkvekpeLDeqqleeinek 35
                + k +kp L+e+q+eei e+
  KOO23936.1 10 KGKAKKPGLSEEQIEEIREA 29
                67999************886 PP

  == domain 2  score: 3.9 bits;  conditional E-value: 0.066
        YolD  56 leevtgyiekidelnkelkledeedeek..kiklsnIvev 93 
                 le +tg++ + d+ ++ lk+ + +d+++  ki+++n+ +v
  KOO23936.1  83 LEMMTGKMGEKDTKEEILKVFKLFDDDStgKISFKNLKRV 122
                 67799999999**********999999999******9887 PP

  == domain 3  score: -2.0 bits;  conditional E-value: 4.7
        YolD   7 ealrelkeeqkkvekpeLDeqqleeine 34 
                 e+l++++ + ++    e+ ++++ +i +
  KOO23936.1 133 EELQDMIDQADRDGDGEINPDEFYRIMK 160
                 5677888888888888888888877765 PP

>> Peptidase_M24  Metallopeptidase family M24
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.0       2.3   1.9e+03      22      37 ..      15      30 ..       8      37 .. 0.81
   2 ?    1.5   0.0      0.25     2e+02       6      51 ..      38      81 ..      34      87 .. 0.84
   3 ?    8.3   0.0    0.0021       1.7       8      44 ..     113     147 ..     110     160 .. 0.81

  Alignments for each domain:
  == domain 1  score: -1.7 bits;  conditional E-value: 2.3
                   HTTCBHHHHHHHHHHH CS
  Peptidase_M24 22 kpgvterelaaeieat 37
                   kpg +e++++++ ea+
     KOO23936.1 15 KPGLSEEQIEEIREAF 30
                   7999999999988766 PP

  == domain 2  score: 1.5 bits;  conditional E-value: 0.25
                   HHHHHHHHHHHHHHHHHTTCBHHHHHHHHHHHHHHHTTTCEESSSS CS
  Peptidase_M24  6 aariasaaleavleaikpgvterelaaeieattlkrhgarglafpp 51
                   ++ i+++ l+a+++a+   v+ +el ++i++    + g++ + fp 
     KOO23936.1 38 SGSIDYRELKAAMRALGFEVKKEELRKMITDI--DADGSGHIEFPE 81
                   5778889999999999999**********988..888888877775 PP

  == domain 3  score: 8.3 bits;  conditional E-value: 0.0021
                    HHHHHHHHHHHHHHHTTCBHHHHHHHHHHHHHHHTTT CS
  Peptidase_M24   8 riasaaleavleaikpgvterelaaeieattlkrhga 44 
                    +i+ + l++v++++ + +te+el+++i+++   r g 
     KOO23936.1 113 KISFKNLKRVAKELGENMTEEELQDMIDQA--DRDGD 147
                    6777789999999***************98..66554 PP

>> PMBR  Pseudomurein-binding repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.5   0.0         2   1.6e+03       2      13 ..      38      49 ..      38      51 .. 0.86
   2 ?   -1.7   0.0       4.8   3.9e+03       7      16 ..      59      68 ..      57      69 .. 0.81
   3 ?   -1.3   0.0       3.5   2.9e+03       1      13 [.      73      85 ..      73      86 .. 0.90
   4 ?   -0.9   0.0       2.7   2.2e+03       6      15 ..      95     104 ..      95     105 .. 0.89
   5 ?    5.4   0.0     0.027        22       1      22 [.     110     131 ..     110     133 .. 0.87
   6 ?   -1.2   0.0       3.3   2.7e+03       2      13 ..     147     158 ..     146     161 .. 0.76

  Alignments for each domain:
  == domain 1  score: -0.5 bits;  conditional E-value: 2
        PMBR  2 sgkisyeeyldm 13
                sg+i y+e++++
  KOO23936.1 38 SGSIDYRELKAA 49
                799*****9875 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 4.8
        PMBR  7 yeeyldmasr 16
                +ee+++m+ +
  KOO23936.1 59 KEELRKMITD 68
                799***9876 PP

  == domain 3  score: -1.3 bits;  conditional E-value: 3.5
        PMBR  1 gsgkisyeeyldm 13
                gsg i + e+l+m
  KOO23936.1 73 GSGHIEFPEFLEM 85
                6899*******98 PP

  == domain 4  score: -0.9 bits;  conditional E-value: 2.7
        PMBR   6 syeeyldmas 15 
                 ++ee+l++++
  KOO23936.1  95 TKEEILKVFK 104
                 79*****997 PP

  == domain 5  score: 5.4 bits;  conditional E-value: 0.027
        PMBR   1 gsgkisyeeyldmasrvlafie 22 
                 ++gkis+ +++++a++   +++
  KOO23936.1 110 STGKISFKNLKRVAKELGENMT 131
                 68*************9888776 PP

  == domain 6  score: -1.2 bits;  conditional E-value: 3.3
        PMBR   2 sgkisyeeyldm 13 
                 +g i ++e+ ++
  KOO23936.1 147 DGEINPDEFYRI 158
                 688999999877 PP

>> Acetyltransf_11  Udp N-acetylglucosamine O-acyltransferase; Domain 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   0.1    0.0013       1.1      24      72 ..      14      67 ..      12     104 .. 0.70
   2 ?    0.8   0.0      0.82   6.7e+02      52      75 ..     117     140 ..      83     148 .. 0.50

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.0013
                     HHTT--HHHHHHHHHHHHHHHS......SSS-HHHHHHHH..HHHTTTSCCHHHHHH CS
  Acetyltransf_11 24 kRrgfseeeikalkkayrllyr......sglsleealeel..eeeaeespevqelld 72
                     k+ g+see+i+++++a++l+        +  +l+ a+++l  e    +++e++++++
       KOO23936.1 14 KKPGLSEEQIEEIREAFNLFDTdhsgsiDYRELKAAMRALgfE---VKKEELRKMIT 67
                     56799************98866543222222233333333331...22445666655 PP

  == domain 2  score: 0.8 bits;  conditional E-value: 0.82
                      HHHHHHHHHTTTSCCHHHHHHHHH CS
  Acetyltransf_11  52 ealeeleeeaeespevqelldFie 75 
                      + l+++++e+ e+   +el d i+
       KOO23936.1 117 KNLKRVAKELGENMTEEELQDMID 140
                      233444333333333444444444 PP

>> DUF3911  Protein of unknown function (DUF3911)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.0       3.9   3.2e+03      11      22 ..      24      35 ..      19      48 .. 0.61
   2 ?   -0.8   0.0       2.1   1.7e+03      10      37 ..      59      85 ..      50      94 .. 0.72
   3 ?   10.3   0.5   0.00073       0.6       7      46 ..      93     134 ..      87     148 .. 0.75

  Alignments for each domain:
  == domain 1  score: -1.7 bits;  conditional E-value: 3.9
     DUF3911 11 kevvemlqlfdl 22
                +e+ e + lfd 
  KOO23936.1 24 EEIREAFNLFDT 35
                455555556653 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 2.1
     DUF3911 10 rkevvemlqlfdlmdtkGfckfknyvev 37
                ++e+ +m+   d  d  G   f +++e+
  KOO23936.1 59 KEELRKMITDIDA-DGSGHIEFPEFLEM 85
                6677777777764.77888888888886 PP

  == domain 3  score: 10.3 bits;  conditional E-value: 0.00073
     DUF3911   7 kGtrkevvemlqlfdlmdtkGfckfknyveve...anetkhne 46 
                 k t++e++++++lfd  d  G   fkn   v     ++ +++e
  KOO23936.1  93 KDTKEEILKVFKLFDD-DSTGKISFKNLKRVAkelGENMTEEE 134
                 789************7.8889999*998777522444555555 PP

>> DUF3486  Protein of unknown function (DUF3486)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.5   0.1    0.0063       5.1     153     177 ..       5      29 ..       1      31 [. 0.77
   2 ?    3.5   0.6       0.1        84      21      87 ..      31      96 ..      24     163 .. 0.56

  Alignments for each domain:
  == domain 1  score: 7.5 bits;  conditional E-value: 0.0063
     DUF3486 153 aaaaaeevakaaGlsaetvakirek 177
                 aa a + +ak+ Gls+e++++ire 
  KOO23936.1   5 AAPASKGKAKKPGLSEEQIEEIREA 29 
                 444444559**************96 PP

  == domain 2  score: 3.5 bits;  conditional E-value: 0.1
     DUF3486 21 aLrekgftqdeIyeelnallaerGeykiSkSalnryaqrleevaeklresreiaealveelgdeedd 87
                 L++++++++  y+el+a++++ G +++ k  l +  + +++ +    e  e  e+++ ++g+++++
  KOO23936.1 31 NLFDTDHSGSIDYRELKAAMRALG-FEVKKEELRKMITDIDADGSGHIEFPEFLEMMTGKMGEKDTK 96
                566666666555667777766666.555555555555555555555555555555555555554444 PP

>> SapB_1  Saposin-like type B, region 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.3   0.0     0.053        43      17      30 ..      90     103 ..      82     104 .. 0.82
   2 ?    7.9   0.2    0.0039       3.2      13      32 ..     122     141 ..     119     142 .. 0.87

  Alignments for each domain:
  == domain 1  score: 4.3 bits;  conditional E-value: 0.053
                 H-SS--HHHHHHHH CS
      SapB_1  17 LkdNkTeeeIieaL 30 
                 +++++T+eeI++++
  KOO23936.1  90 MGEKDTKEEILKVF 103
                 6789******9975 PP

  == domain 2  score: 7.9 bits;  conditional E-value: 0.0039
                 HHHHH-SS--HHHHHHHHHH CS
      SapB_1  13 veklLkdNkTeeeIieaLek 32 
                 v k+L++N Teee+ +++++
  KOO23936.1 122 VAKELGENMTEEELQDMIDQ 141
                 6789**********999997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (175 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       931  (0.051927); expected 358.6 (0.02)
Passed bias filter:                      673  (0.037537); expected 358.6 (0.02)
Passed Vit filter:                        80  (0.00446204); expected 17.9 (0.001)
Passed Fwd filter:                        22  (0.00122706); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              22  [number of targets reported over threshold]
# CPU time: 0.49u 0.25s 00:00:00.74 Elapsed: 00:00:00.38
# Mc/sec: 1364.18
//
Query:       KOO23937.1  [L=639]
Description: hypothetical protein Ctob_000333 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
  ------ inclusion threshold ------
       0.12   12.9   1.4       0.55   10.7   0.1    2.8  3  EF-hand_7        EF-hand domain pair
        2.8    8.1   6.3       0.65   10.2   0.5    3.0  3  MCD_N            Malonyl-CoA decarboxylase N-terminal domain


Domain annotation for each model (and alignments):
>> EF-hand_7  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.0       1.3   1.2e+04      21      32 ..     162     173 ..     150     184 .. 0.57
   2 ?   10.7   0.1   6.1e-05      0.55      16      53 ..     209     241 ..     202     270 .. 0.82
   3 ?   -0.8   0.0      0.25   2.2e+03      13      26 ..     433     446 ..     419     480 .. 0.56

  Alignments for each domain:
  == domain 1  score: -3.2 bits;  conditional E-value: 1.3
   EF-hand_7  21 keellrllrkif 32 
                 +eell++l+ i 
  KOO23937.1 162 REELLQALKEIE 173
                 344444444433 PP

  == domain 2  score: 10.7 bits;  conditional E-value: 6.1e-05
   EF-hand_7  16 dgyldkeellrllrkifqgagegsklsdeelellfkef 53 
                  g+l+k+e++++lr          k+sd++++++fk+ 
  KOO23937.1 209 EGRLTKQEFRQVLRM-----TLSLKPSDDQIDDFFKMA 241
                 69************9.....888888**********97 PP

  == domain 3  score: -0.8 bits;  conditional E-value: 0.25
   EF-hand_7  13 tdgdgyldkeellr 26 
                 +dg g++++e + r
  KOO23937.1 433 SDGMGFVSREAFVR 446
                 34455555555444 PP

>> MCD_N  Malonyl-CoA decarboxylase N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.5   7.2e-05      0.65      12      47 ..     137     173 ..     128     178 .. 0.78
   2 ?   -1.8   0.1       0.4   3.6e+03       5      32 ..     290     317 ..     287     323 .. 0.74
   3 ?   -3.2   0.0         1   9.4e+03      64      80 ..     574     590 ..     554     590 .. 0.57

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 7.2e-05
                 HHHHCC.--.SHHHHHHHHHHCSBHHHHHHHHHTTST CS
       MCD_N  12 ieayra.akgsekaeeeLrealeprrqeLlrrlnlap 47 
                  +++r+ +++s ++++eL+ea+++rr eLl+ l++++
  KOO23937.1 137 TAEVRSrEPTSVAKLQELQEACTARREELLQALKEIE 173
                 4455542555559******************998765 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 0.4
                 HHHHHHHHHHHCC--.SHHHHHHHHHHC CS
       MCD_N   5 keavekaieayraakgsekaeeeLreal 32 
                 +ea +++++ay++ + s+++  +L++ +
  KOO23937.1 290 AEACARQAQAYQDCQASAAKWGHLQRLM 317
                 6778899999999887887777777665 PP

  == domain 3  score: -3.2 bits;  conditional E-value: 1
                 TTT-GCHHHHHHHHHHH CS
       MCD_N  64 lkkekelraldadlehl 80 
                  +++ el+al++ l+ l
  KOO23937.1 574 GNTSSELAALNSSLRAL 590
                 33444888888888765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (639 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1252  (0.069831); expected 358.6 (0.02)
Passed bias filter:                      545  (0.0303977); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.62u 0.28s 00:00:00.90 Elapsed: 00:00:00.42
# Mc/sec: 4571.68
//
Query:       KOO23938.1  [L=600]
Description: hypothetical protein Ctob_000339 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.1e-06   27.2   0.1    9.8e-06   25.9   0.1    1.6  1  EF-hand_7  EF-hand domain pair
    1.6e-05   24.4   0.7     0.0026   17.5   0.1    3.2  3  EF-hand_6  EF-hand domain
    0.00023   20.5   0.1     0.0058   16.1   0.0    2.4  2  EF-hand_1  EF hand


Domain annotation for each model (and alignments):
>> EF-hand_7  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.9   0.1   1.6e-09   9.8e-06       7      69 ..     263     319 ..     259     321 .. 0.94

  Alignments for each domain:
  == domain 1  score: 25.9 bits;  conditional E-value: 1.6e-09
   EF-hand_7   7 aFkelDtdgdgyldkeellrllrkifqgagegsklsdeelellfkefDtdkdGvisfdEFlkl 69 
                 aF+ +D+d +g+ld++el+++l+      + g +ls  +  +++     + dG+++++EF +l
  KOO23938.1 263 AFEHFDRDISGFLDYRELRDALQ------HYGMDLSASATARIIAAYEVRPDGKLDLYEFNRL 319
                 7**********************......999999999999*******************976 PP

>> EF-hand_6  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5   0.1   4.4e-07    0.0026       3      28 ..     261     286 ..     259     292 .. 0.89
   2 ?    3.5   0.0     0.014        87      13      27 ..     307     321 ..     302     328 .. 0.86
   3 ?   -2.4   0.0       1.1   6.7e+03      17      27 ..     388     398 ..     387     405 .. 0.85

  Alignments for each domain:
  == domain 1  score: 17.5 bits;  conditional E-value: 4.4e-07
   EF-hand_6   3 reaFklfDkdgdGkidaeElrkalrk 28 
                  +aF++fD+d +G++d+ Elr+al++
  KOO23938.1 261 VAAFEHFDRDISGFLDYRELRDALQH 286
                 689*********************95 PP

  == domain 2  score: 3.5 bits;  conditional E-value: 0.014
   EF-hand_6  13 gdGkidaeElrkalr 27 
                  dGk+d  E+ +++ 
  KOO23938.1 307 PDGKLDLYEFNRLIH 321
                 59********99886 PP

  == domain 3  score: -2.4 bits;  conditional E-value: 1.1
   EF-hand_6  17 idaeElrkalr 27 
                 ++ ++l++ lr
  KOO23938.1 388 VTEDQLIAQLR 398
                 7999****999 PP

>> EF-hand_1  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.0   9.8e-07    0.0058       4      28 ..     262     286 ..     259     287 .. 0.91
   2 ?    2.0   0.0     0.031   1.9e+02      14      26 ..     308     320 ..     308     323 .. 0.87

  Alignments for each domain:
  == domain 1  score: 16.1 bits;  conditional E-value: 9.8e-07
                 HHHHHHTTTSSSEEEHHHHHHHHHH CS
   EF-hand_1   4 eiFrefDkDgdGkIdfeEfkellkk 28 
                  +F++fD+D +G++d+ E++++l++
  KOO23938.1 262 AAFEHFDRDISGFLDYRELRDALQH 286
                 79********************986 PP

  == domain 2  score: 2.0 bits;  conditional E-value: 0.031
                 SSEEEHHHHHHHH CS
   EF-hand_1  14 dGkIdfeEfkell 26 
                 dGk+d+ Ef +l+
  KOO23938.1 308 DGKLDLYEFNRLI 320
                 9********9886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (600 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       927  (0.0517039); expected 358.6 (0.02)
Passed bias filter:                      556  (0.0310112); expected 358.6 (0.02)
Passed Vit filter:                        61  (0.00340231); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.61u 0.31s 00:00:00.92 Elapsed: 00:00:01.14
# Mc/sec: 1588.93
//
Query:       KOO23939.1  [L=274]
Description: mpbq msbq methyltransferase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.5e-23   83.3   0.0    2.7e-23   82.5   0.0    1.4  1  Methyltransf_25  Methyltransferase domain
    5.7e-22   78.2   0.0    9.7e-22   77.4   0.0    1.4  1  Methyltransf_11  Methyltransferase domain
    2.1e-18   66.6   0.0    2.7e-18   66.2   0.0    1.2  1  Methyltransf_31  Methyltransferase domain
    6.1e-18   65.0   0.0    1.8e-16   60.2   0.0    2.0  2  Ubie_methyltran  ubiE/COQ5 methyltransferase family
    6.4e-13   48.9   0.0    1.4e-12   47.8   0.0    1.4  1  Methyltransf_23  Methyltransferase domain
    2.2e-11   44.3   0.0    3.4e-11   43.7   0.0    1.3  1  Methyltransf_12  Methyltransferase domain
    2.6e-07   30.3   0.0      4e-07   29.7   0.0    1.2  1  MTS              Methyltransferase small domain
    4.6e-05   22.6   0.0    6.1e-05   22.2   0.0    1.1  1  RrnaAD           Ribosomal RNA adenine dimethylase
     0.0026   17.7   0.0      0.033   14.2   0.0    2.2  1  ADH_zinc_N       Zinc-binding dehydrogenase
     0.0059   15.9   0.0     0.0083   15.4   0.0    1.2  1  CMAS             Mycolic acid cyclopropane synthetase
  ------ inclusion threshold ------
      0.012   15.0   0.0      0.017   14.5   0.0    1.2  1  GidB             rRNA small subunit methyltransferase G
      0.015   14.9   0.0      0.025   14.2   0.0    1.2  1  MetW             Methionine biosynthesis protein MetW
      0.033   13.8   0.0      0.047   13.3   0.0    1.2  1  Cons_hypoth95    Conserved hypothetical protein 95
      0.076   12.4   0.0       0.09   12.1   0.0    1.2  1  PrmA             Ribosomal protein L11 methyltransferase (Prm
       0.15   11.8   0.0       0.22   11.2   0.0    1.2  1  PCMT             Protein-L-isoaspartate(D-aspartate) O-methyl
       0.16   11.4   0.0       0.21   11.0   0.0    1.1  1  TehB             Tellurite resistance protein TehB
       0.17   11.8   0.0       0.25   11.3   0.0    1.2  1  Methyltransf_18  Methyltransferase domain
       0.18   11.5   0.0       0.25   11.1   0.0    1.2  1  Methyltransf_16  Lysine methyltransferase


Domain annotation for each model (and alignments):
>> Methyltransf_25  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   82.5   0.0   2.7e-26   2.7e-23       1      97 []      51     143 ..      51     143 .. 0.95

  Alignments for each domain:
  == domain 1  score: 82.5 bits;  conditional E-value: 2.7e-26
                      EEEET-TTSHHHHHHHCTSTSSEEEEEESSHHHHHHHHHHHHHTTT.TEEEEESBCCGBSSSTTTEEEEEEESTGGGSSHHHHHHHHHHHHHHE CS
  Methyltransf_25   1 vLdlGcGtGrltlalakrlgkakvtgvDiseemleaareraeeegl.nvefvqgdaedlpfedgsfDlvvssgalhhlsdedlekalkeiarvL 93 
                      +Ld+G+GtG+l+l++akr+g++++t +D s++ml++a++++    l  +efv  da++lpf+d+sfD vvssg++ +++  d  +al+e  rv+
       KOO23939.1  51 ILDVGAGTGTLSLQVAKRCGAERLTLLDQSAQMLNQAKAKLP---LaPCEFVLSDAQTLPFDDDSFDRVVSSGSFYYFP--DPVAALREQLRVV 139
                      8****************************************3...359***********************999***99..5569********* PP

                      EEEE CS
  Methyltransf_25  94 kpgG 97 
                      +pgG
       KOO23939.1 140 RPGG 143
                      ***9 PP

>> Methyltransf_11  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   77.4   0.0   9.8e-25   9.7e-22       1      95 [.      52     146 ..      52     147 .. 0.98

  Alignments for each domain:
  == domain 1  score: 77.4 bits;  conditional E-value: 9.8e-25
                      EEET-TTSHHHHHHHHTT..SEEEEEES-HHHHHHHHHHCCHHT-EEEETTEECCCTSS-TT-EEEEEEES-CCC-CCHHHHHHHHHHHEEEEE CS
  Methyltransf_11   1 LdvGcGtGrlaealakrg..arvvgvDlskemlklakekaseeglkvefvvadaeklpfednsfDlvvssevlhhvedpekalkeiaRvLkpgG 92 
                      LdvG+GtG l+ ++akr+  +r++ +D s++ml++ak+k + ++  +efv +da++lpf d+sfD vvss ++ +++dp +al+e  Rv++pgG
       KOO23939.1  52 LDVGAGTGTLSLQVAKRCgaERLTLLDQSAQMLNQAKAKLPLAP--CEFVLSDAQTLPFDDDSFDRVVSSGSFYYFPDPVAALREQLRVVRPGG 143
                      8**************9999************************9..9*********************************************** PP

                      EEE CS
  Methyltransf_11  93 llv 95 
                       ++
       KOO23939.1 144 CVL 146
                      876 PP

>> Methyltransf_31  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.2   0.0   2.7e-21   2.7e-18       4     109 ..      48     147 ..      45     182 .. 0.92

  Alignments for each domain:
  == domain 1  score: 66.2 bits;  conditional E-value: 2.7e-21
  Methyltransf_31   4 glrvlDlGCGtGeltfelaeelgpkaevvGiDiseeaielArenaqklgldnveFeqgdieeleklledekfDlilsnevlnaladpdkileei 97 
                       l++lD+G+GtG+l+++ a + +   +++++D s++++++A++   kl l  +eF  +d+++l+  + d++fD ++s + +++++dp ++l+e 
       KOO23939.1  48 PLKILDVGAGTGTLSLQVA-KRCGAERLTLLDQSAQMLNQAKA---KLPLAPCEFVLSDAQTLP--FDDDSFDRVVSSGSFYYFPDPVAALREQ 135
                      689****************.5566678****************...8*****************..**************************** PP

  Methyltransf_31  98 ervlkpggilli 109
                       rv++pgg +l+
       KOO23939.1 136 LRVVRPGGCVLV 147
                      ********8775 PP

>> Ubie_methyltran  ubiE/COQ5 methyltransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.2   0.0   1.8e-19   1.8e-16      41     158 ..      41     154 ..      20     165 .. 0.87
   2 ?    3.3   0.0     0.046        45     189     217 ..     159     187 ..     157     197 .. 0.89

  Alignments for each domain:
  == domain 1  score: 60.2 bits;  conditional E-value: 1.8e-19
                      HH--S--TTEEEEES-TT-HHHHHHHHHHHHHHEEEEEES-HHHHHHHHHHHHHHTSSTEEEEE--TTT-TTS-T-EEEEEEES-GGG-S-HHH CS
  Ubie_methyltran  41 klvavkrgakvlDvagGtgDlafklsdsvgekgkvvvlDinenmLkvgekklkeegkinieflqanaeeLpfeddsfDvvtvsfGlrnvtDklk 134
                      +l +   + k+lDv +Gtg l++++++  g++ ++++lD +++mL+++++kl        ef+ ++a+ Lpf+ddsfD v  s  +  ++D   
       KOO23939.1  41 DLANLNGPLKILDVGAGTGTLSLQVAKRCGAE-RLTLLDQSAQMLNQAKAKLP---LAPCEFVLSDAQTLPFDDDSFDRVVSSGSFYYFPDPVA 130
                      566667788*******************9986.799*************9996...5678********************99999********* PP

                      HHHHHHHHEEEEEEEEEEEE---- CS
  Ubie_methyltran 135 aLkeayrvlkpGGrlvvlefskve 158
                      aL+e  rv++pGG ++v+   +++
       KOO23939.1 131 ALREQLRVVRPGGCVLVMGSLQPK 154
                      ****************99876665 PP

  == domain 2  score: 3.3 bits;  conditional E-value: 0.046
                      HHHHHHHHHS--HHHHHHHHHHTTEEEEE CS
  Ubie_methyltran 189 ryLvesirafPdqetlkeliedaGfksve 217
                      r++++  ++fP +e++++ + +aG++ v+
       KOO23939.1 159 RFFAQMFNRFPTEEQYHAWFAEAGLTDVK 187
                      67788889*****************9997 PP

>> Methyltransf_23  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.8   0.0   1.4e-15   1.4e-12       7     163 ..      33     186 ..      23     188 .. 0.81

  Alignments for each domain:
  == domain 1  score: 47.8 bits;  conditional E-value: 1.4e-15
  Methyltransf_23   7 eelsdklerllpklraggrvLdiGcGtGil.levlrengf.svtgvDlspeaveiae...kakkaqkdqfdeqeaaepqgkfdlIvlrevlehv 95 
                      +e++++ + l+ +l+ + ++Ld+G+GtG+l l+v++++g+  +t+ D+s ++ + a+        +++  d+q  ++++++fd +v++ +++ +
       KOO23939.1  33 NEMREAGLDLA-NLNGPLKILDVGAGTGTLsLQVAKRCGAeRLTLLDQSAQMLNQAKaklPLAPCEFVLSDAQTLPFDDDSFDRVVSSGSFYYF 125
                      67788888887.589999**********6527888999**89**************99884444556666677778899*************** PP

  Methyltransf_23  96 pdppellrqiatllkpgGylllseplaslkedrllldwlylvpagrhisffsarslkelleeaGlevv 163
                      pdp ++lr   + ++pgG +l++ +l++   + l   +++ +++    +f +++++  ++ eaGl++v
       KOO23939.1 126 PDPVAALREQLRVVRPGGCVLVMGSLQP---KPL--FIRFFAQM--FNRFPTEEQYHAWFAEAGLTDV 186
                      **********************999765...333..34444444..5588888888888888888887 PP

>> Methyltransf_12  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.7   0.0   3.5e-14   3.4e-11       1      98 [.      52     144 ..      52     145 .. 0.84

  Alignments for each domain:
  == domain 1  score: 43.7 bits;  conditional E-value: 3.5e-14
  Methyltransf_12   1 LeiGcGtGsllralleklpdieytgvDispsaiedakeklakrennnnnnvelealdlldldggssfDlvvasnvlhhlkdirevldnirklLk 94 
                      L++G+GtG+l+  ++++    ++t +D s++++++ak+kl       +   + ++l  + +   +sfD vv+s+ + +++d+ ++l++  ++++
       KOO23939.1  52 LDVGAGTGTLSLQVAKRCGAERLTLLDQSAQMLNQAKAKLPLAPC-EFVLSDAQTLPFD-D---DSFDRVVSSGSFYYFPDPVAALREQLRVVR 140
                      8********************************888888887763.3333333333332.2...3***************************** PP

  Methyltransf_12  95 pgGr 98 
                      pgG+
       KOO23939.1 141 PGGC 144
                      ***8 PP

>> MTS  Methyltransferase small domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.7   0.0   4.1e-10     4e-07      34     103 ..      50     118 ..      39     123 .. 0.83

  Alignments for each domain:
  == domain 1  score: 29.7 bits;  conditional E-value: 4.1e-10
                 EEEEET-TTSHHHHHHHHHTTC.EEEEEESBHHHHHHHHHHHHHTTGCEEEEE-STTT.TSTTS-EEEEEE CS
         MTS  34 kvlDlGcGaGvlgaalakespeaevtlvdvdarAlesakenleanklevevvasdvle.eveekkfdlivs 103
                 k+lD+G+G+G l++++ak++   ++tl+d++a+ l+ ak+ l      +e+v sd+    +++++fd +vs
  KOO23939.1  50 KILDVGAGTGTLSLQVAKRCGAERLTLLDQSAQMLNQAKAKLPLAP--CEFVLSDAQTlPFDDDSFDRVVS 118
                 69**********************************9998886655..67788877652566889999887 PP

>> RrnaAD  Ribosomal RNA adenine dimethylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.2   0.0   6.2e-08   6.1e-05      10      79 ..      27      97 ..      24     122 .. 0.85

  Alignments for each domain:
  == domain 1  score: 22.2 bits;  conditional E-value: 6.2e-08
                --EE--HHHHHHHHHHH-GGTTSEEEEES-TTTCCHHHHHCC-..SEEEEE-S-HHHHHHHHCHTTTCCCEE CS
      RrnaAD 10 qnflknkkvineIldklnleekltvleigpGkGilTeeLakra..kqvvvlElderLakllqkklskdeklk 79
                q f +++ + +  ld +nl+  l++l++g+G+G l+ ++akr+  + +++l +  ++++  ++kl    + +
  KOO23939.1 27 QPFFTSNEMREAGLDLANLNGPLKILDVGAGTGTLSLQVAKRCgaERLTLLDQSAQMLNQAKAKLP-LAPCE 97
                5677777777778999*******************************************9999875.44555 PP

>> ADH_zinc_N  Zinc-binding dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.2   0.0   3.3e-05     0.033       1     104 [.      57     165 ..      57     170 .. 0.76

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 3.3e-05
                 HHHHHHHHHHHHTT-.EEEEEESSHHHHHHHHH.T..T.ESEEEETTTC.HHHHHHHHHTT.TSSEEEEEESSCSHHHHHHHHHCEEEEEEEEECSC.T CS
  ADH_zinc_N   1 gvGlaavqlAkalGa.eviavdsseeklelakk.l..G.adevinykea.dlverikeltg.gegvdvvfecvGsgatleaalkllkpgGrlvvvGg.g 91 
                 g G++ +q+Ak +Ga + +  d s++ l +ak  l    +++v+   ++  ++++  +     + + +  + v+   +l++ l++++pgG++ v+G   
  KOO23939.1  57 GTGTLSLQVAKRCGAeRLTLLDQSAQMLNQAKAkLplApCEFVLSDAQTlPFDDDSFDRVVsSGSFYYFPDPVA---ALREQLRVVRPGGCVLVMGSlQ 152
                 77999**********99999******998888764554589999996766677766666642446666667777...*******************855 PP

                 SSEEEEEHHHHHH CS
  ADH_zinc_N  92 kgeeefdlrnlll 104
                  ++  ++++ +++
  KOO23939.1 153 PKPLFIRFFAQMF 165
                 5555566665555 PP

>> CMAS  Mycolic acid cyclopropane synthetase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.0   8.4e-06    0.0083      55     141 ..      40     126 ..      32     159 .. 0.74

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 8.4e-06
                 HTTTT--TT-EEEEES-TTSHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHTS-SSS-EEEEES-GGG-..--.--SEEEEES-GGGTS CS
        CMAS  55 leklelkpGmtlLdiGcGWGslvrraverydvkvvglTlSkeqaklakkrvdeldlerkvevklldyedl..de.kvdrvvsvgafehvg 141
                 l+ ++l+   ++Ld+G+G G+l  + ++r +++   lTl ++ a++ +++ ++l l+   e  l+d + l  d+  +drvvs g f  + 
  KOO23939.1  40 LDLANLNGPLKILDVGAGTGTLSLQVAKRCGAE--RLTLLDQSAQMLNQAKAKLPLAPC-EFVLSDAQTLpfDDdSFDRVVSSGSFYYFP 126
                 66778888899******************8887..589999999999999999987765.4556666665224469*******9997774 PP

>> GidB  rRNA small subunit methyltransferase G
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.5   0.0   1.7e-05     0.017      51     121 ..      50     118 ..      39     152 .. 0.85

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 1.7e-05
                 .EEEETSTTTTTHHHHHHH-TTSEEEEEES-HHHHHHHHHHHHHCT-SSEEEEES-CCC.TTTTT-EEEEEE CS
        GidB  51 kviDvGsGaGlPGipLaiarpelkltLleslekkiaFLeevkeelklenveivearaee.kqeeekydvvts 121
                 k++DvG+G G  ++ +a  +   +ltLl+++    + L+++k++l l+  e+v ++a++     +++d v+s
  KOO23939.1  50 KILDVGAGTGTLSLQVAKRCGAERLTLLDQSA---QMLNQAKAKLPLAPCEFVLSDAQTlPFDDDSFDRVVS 118
                 69***************************986...689*******************997556677776665 PP

>> MetW  Methionine biosynthesis protein MetW
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   0.0   2.5e-05     0.025      16     103 ..      50     140 ..      42     148 .. 0.77

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 2.5e-05
        MetW  16 rvldlGcGdGel.lellkeekqvdgrGleldeegvaecvak.Glsviqgdl.dkdlenfedksfdyvvlsqtlqatrnpkevldellrigr 103
                 ++ld+G+G G+l l++ k     +   l+++++ ++++ ak  l+  +  l d +   f+d+sfd vv s ++    +p   l+e lr+ r
  KOO23939.1  50 KILDVGAGTGTLsLQVAKRCGAERLTLLDQSAQMLNQAKAKlPLAPCEFVLsDAQTLPFDDDSFDRVVSSGSFYYFPDPVAALREQLRVVR 140
                 89*********94444444334444567889999999998833554444332566678******************************976 PP

>> Cons_hypoth95  Conserved hypothetical protein 95
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.0   4.7e-05     0.047      24      84 ..      31      91 ..      25     116 .. 0.83

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 4.7e-05
                   SSHHHHHHHHHHHCCCHCC-EEEETT-TTSHHHHHHHHT.T-SEEEEEES-HHHHHHHHHHH CS
  Cons_hypoth95 24 ttdrvrealFnilaaeiegarvLDlfaGsGalglEAlSR.gakkavlvekdkeavkilkenl 84
                   t++++rea  ++ + ++  + +LD+ aG+G+l+l  + R ga++ +l++++++++++ k++l
     KOO23939.1 31 TSNEMREAGLDLANLNGPLK-ILDVGAGTGTLSLQVAKRcGAERLTLLDQSAQMLNQAKAKL 91
                   66777777777766555555.9**************99989************999888766 PP

>> PrmA  Ribosomal protein L11 methyltransferase (PrmA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   9.1e-05      0.09     163     210 ..      49      97 ..      38     177 .. 0.75

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 9.1e-05
        PrmA 163 eevlDvGtGSGiLai.aaakLgakkvvavDiDevAvkvakeNaelNkve 210
                  ++lDvG+G+G L++ +a++ ga++ + +D   + ++ ak+ + l  +e
  KOO23939.1  49 LKILDVGAGTGTLSLqVAKRCGAERLTLLDQSAQMLNQAKAKLPLAPCE 97 
                 489************446679*****99999999999988776665554 PP

>> PCMT  Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   0.00022      0.22      60     118 ..      34      91 ..      25     110 .. 0.85

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00022
                 HHHHHHHHHTT--TT-EEEEES-TTSHHHHHHHHHHCTTCEEEEEESBHHHHHHHHHHH CS
        PCMT  60 hmvalalellelkkgarvLevGsGsGyltavlarlvgekgrvvsierikelveeakrnl 118
                  m  + l+l +l+   ++L+vG+G+G l+  +a+  g++  +  +++++++ ++ak++l
  KOO23939.1  34 EMREAGLDLANLNGPLKILDVGAGTGTLSLQVAKRCGAER-LTLLDQSAQMLNQAKAKL 91 
                 566677889999999*************999999999887.666888888888888876 PP

>> TehB  Tellurite resistance protein TehB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   0.00021      0.21      26     138 ..      43     153 ..      27     193 .. 0.77

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00021
                 CCCS-S-EEEEES-TTSHHHHHHHHTT-EEEEEES-HHHHHHHHHHHHHTT-TTEEEEE--GGG----S.-EEEEEEESSGGGS-GGGHHHHHHHHHHT CS
        TehB  26 vkivkpgkvldlgcgqgrnslylsllgydvtawdknensiafleeikekenlknistalydineaklde.rydfilstvvlmfleaeripsiienmqec 123
                 +++  p k+ld+g g g  sl ++      + +   ++s ++l++ k k  l   +  l d +++ +d+  +d ++s+  + ++ ++ ++ + e++ + 
  KOO23939.1  43 ANLNGPLKILDVGAGTGTLSLQVAKR-CGAERLTLLDQSAQMLNQAKAKLPLAPCEFVLSDAQTLPFDDdSFDRVVSSGSFYYF-PDPVAALREQL-RV 138
                 5666799**************99865.345566667789999***********************9975279*****9998776.67788877776.56 PP

                 EEEEEEEEEEEEB-- CS
        TehB 124 tkvggynlivaamst 138
                  ++gg  l++ +++ 
  KOO23939.1 139 VRPGGCVLVMGSLQP 153
                 789999998887765 PP

>> Methyltransf_18  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   0.00025      0.25      17      59 ..      50      92 ..      42     120 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00025
  Methyltransf_18 17 rvaDiGtDHgylpiylvkegkakkviasDinegplekakenie 59
                     +++D+G+  g l++ ++k+  a++ +  D +++ l++ak+++ 
       KOO23939.1 50 KILDVGAGTGTLSLQVAKRCGAERLTLLDQSAQMLNQAKAKLP 92
                     799************************************9875 PP

>> Methyltransf_16  Lysine methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   0.00025      0.25      45      80 ..      46      81 ..      27     118 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00025
  Methyltransf_16 45 lsklsvlELGsGtGlvGlavaellpeakviltDlee 80
                       +l++l++G+GtG   l va+  +  +++l D++ 
       KOO23939.1 46 NGPLKILDVGAGTGTLSLQVAKRCGAERLTLLDQSA 81
                     45789******************9999999999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (274 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       317  (0.0176809); expected 358.6 (0.02)
Passed bias filter:                      298  (0.0166211); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                        18  (0.00100396); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              18  [number of targets reported over threshold]
# CPU time: 0.44u 0.26s 00:00:00.70 Elapsed: 00:00:00.39
# Mc/sec: 2092.23
//
Query:       KOO23940.1  [L=295]
Description: hypothetical protein Ctob_000329 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.1e-12   47.9   0.0    2.2e-12   46.9   0.0    1.5  2  PTEN_C2   C2 domain of PTEN tumour-suppressor protein
  ------ inclusion threshold ------
        0.1   13.1   0.0        0.2   12.2   0.0    1.4  1  PH        PH domain


Domain annotation for each model (and alignments):
>> PTEN_C2  C2 domain of PTEN tumour-suppressor protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.6   0.0      0.95   8.5e+03      53      68 ..      49      64 ..      38      65 .. 0.81
   2 !   46.9   0.0   2.5e-16   2.2e-12      60     134 ..     152     237 ..     115     238 .. 0.83

  Alignments for each domain:
  == domain 1  score: -3.6 bits;  conditional E-value: 0.95
                GGG--EEEEEEEEE-S CS
     PTEN_C2 53 aktfiieeskrvpveG 68
                a+  ++e+++rv+ +G
  KOO23940.1 49 AELGMVELKQRVVACG 64
                5677999999999987 PP

  == domain 2  score: 46.9 bits;  conditional E-value: 2.5e-16
                 EEEEEEE-SEEEEEEEEEEEE.TTS-EEEEEEEEEGGGS-T..........T--EEEEEGGG-BS---G...GGS-TT-EEEEEEE CS
     PTEN_C2  60 eskrvpveGDvlveflhkdsk.llkkekmfrvwfnTsfiek..........nqnvltltkneLDkalkdkadkkfsknfkvelvfe 134
                 e+  +++  D ++ +++k s+ l kk +++++w++T+f+            +  vltl+++e+D a+k+k ++++++ f++el fe
  KOO23940.1 152 ETPYLVIAADTKFTIYDKPSTpLHKKVVIGHFWVHTAFLAAqcgedgsgdgSGGVLTLKREEVDHACKKKYSERYPPTFELELHFE 237
                 455567899*********9985666666************9********************************************8 PP

>> PH  PH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   2.2e-05       0.2      78     104 ..      16      41 ..       3      42 .. 0.82

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 2.2e-05
                 SSTEEEEEEESSHHHHHHHHHHHHHHH CS
          PH  78 ngsrtyllqasseeerkeWikaiqsai 104
                 + s t++lqa ++  r +W++ +++a+
  KOO23940.1  16 Q-SATFYLQAHNAAARDDWLEKLRAAS 41 
                 2.49*******************9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (295 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       422  (0.0235373); expected 358.6 (0.02)
Passed bias filter:                      361  (0.020135); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.45u 0.27s 00:00:00.72 Elapsed: 00:00:00.44
# Mc/sec: 2028.07
//
Query:       KOO23941.1  [L=462]
Description: glutamine synthetase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    6.7e-98  327.9   0.0    7.8e-98  327.6   0.0    1.0  1  Gln-synt_C    Glutamine synthetase, catalytic domain
    6.2e-06   26.0   0.0      5e-05   23.1   0.0    2.4  1  Gln-synt_N_2  Glutamine synthetase N-terminal domain
    0.00036   20.2   0.0    0.00076   19.2   0.0    1.5  1  Gln-synt_N    Glutamine synthetase, beta-Grasp domain


Domain annotation for each model (and alignments):
>> Gln-synt_C  Glutamine synthetase, catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  327.6   0.0  1.3e-101   7.8e-98       3     345 .]     119     459 ..     117     459 .. 0.95

  Alignments for each domain:
  == domain 1  score: 327.6 bits;  conditional E-value: 1.3e-101
                 -HHHHHHHHHHHHHHTTCEEEEEEEEEEEEESEECCCESSEEEEEEE.TB...B.TSS-TTBHCCCCCTCCHHHHHHHHHHHTT--EECCEEECCCTEE CS
  Gln-synt_C   3 dPRsvlkralarlaeeGltvvvgpElEFflfdkeedkeasksllevdseekgrpaekggyfsvapvdeaedlrreivealealgieveashhEvatgQv 101
                  PR+vl+ +la+laeeG+t+ +g+E+EFf++d   ++            ++    +++ +++ +++ +  +l++ +v+ +ea+g+  ++++hE a+gQ+
  KOO23941.1 119 GPRNVLRGVLAKLAEEGVTLKTGVECEFFILDGSGRAV-----------SDPLDVQAKPCYDAQALMRRYELISTLVTHMEAMGWGPYQADHEDANGQF 206
                 6*******************************988854...........2334456899**************************************** PP

                 EEEE--EECHHHHHHHHHHHHHHHHHHHHTT-EEE-SSSSSTTS---BEEEEEEEEECTT.EESSB-TTSGGG.B-HHHHHHHHHHHHHHHHHHHHHS- CS
  Gln-synt_C 102 EinlkfadalkaaDnvvtfKrvvkevArkhgltatFmpKplegdnGsgmHvhlSlwdkdg.knlfadeddeya.lselarhfigGllkhakaltaltap 198
                 E+n+ ++dal +aD+vv+fK++v+++A++ g +atFmpKp+++ +Gsg+H h+Sl +    knl+ +   e++ ls  a++f +Gll+ha+a+talt+p
  KOO23941.1 207 EVNWDYNDALVTADRVVLFKYMVRTLAERAGFRATFMPKPFASLTGSGCHAHISLHEPGTgKNLCKGGAPEMHgLSPRALSFTAGLLNHAPAMTALTNP 305
                 ********************************************************88666*****99988878************************* PP

                 SCCHHHHC......SSSTTSSSBEEEESS-TTCSEEEE-TSGGCSTEEEECEBTTS-HHHHHHHHHHHHHHHHHTT--------S-SSSS-TTTH.... CS
  Gln-synt_C 199 tvnSYkRl......vpgyeaPvalawgarNRsallRipaskekakrvElRlpdasaNPYLalAallaAgldGienklepgepvekdlyelspeer.... 287
                 tvnSYkRl         +++P+a++w+ +NR+al+R+p    +++r+ElRl+d saNPYL+ Aa+ aAgldG++ +  p+ p+++++y+ s+  +    
  KOO23941.1 306 TVNSYKRLgarmtsSGATWSPTAATWAGNNRTALIRVPD---DQRRMELRLADMSANPYLMAAAIGAAGLDGLRARSVPPLPTDRNMYDPSDPVAaaai 401
                 ********77777667889********************...99*********************************************9887666667 PP

                 TSS-B--SSHHHHHHHHHCSHHHCCSS-HHHHHHHHHHHHHCHHHHHCT--HHHHHHH CS
  Gln-synt_C 288 kgieelPasleeAlealeedellkevlgeevieaylalkraEleeleeevsdwelery 345
                 k  + lP++l++Al+al++++ l+  l++ ++++yl+l+ra ++e+ ++ s+we+e y
  KOO23941.1 402 KAAPPLPSNLKAALDALDSSQALRSGLTDAFVDSYLKLRRAHWDEYARHLSPWEIEAY 459
                 88889**************************************************987 PP

>> Gln-synt_N_2  Glutamine synthetase N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.1   0.0   8.4e-09     5e-05      16     100 ..      35     110 ..      21     115 .. 0.89

  Alignments for each domain:
  == domain 1  score: 23.1 bits;  conditional E-value: 8.4e-09
                   -EEEEEEE-TTS-EEEEEEEGGGHHHHHTT-EEE-GGGGG--TTS---TT-S-SSS--EEEEE-GGG-EEE---SSTTSEEEEEE CS
  Gln-synt_N_2  16 eLieflyvdlaGvtrGkalplasLeekLasGiGltkatlalserdlidevedlgpvGelrLvpdPasavalpyaPdaaallgdlv 100
                   ++ +f yvdl Gv r k +p +++ee  + G G+    + l +           ++G+l  +pdPa+   lp  P++  l  dlv
    KOO23941.1  35 KFYQFSYVDLFGVQRSKLVPASRVEEIATGGAGFAGFASHLDMDP---------TMGDLLAIPDPATLTPLPWQPEVGWLSCDLV 110
                   5678******************************99888887643.........47**********************9999987 PP

>> Gln-synt_N  Glutamine synthetase, beta-Grasp domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.2   0.0   1.3e-07   0.00076       3      79 ..      35     108 ..      33     111 .. 0.90

  Alignments for each domain:
  == domain 1  score: 19.2 bits;  conditional E-value: 1.3e-07
                 -EEEEEEE-SSS-EEEEEEEHHHHHHHTTTT-EEEETTSSTTT------EEEEEEEGGGEEE-SS-SS-.EEEEEEE CS
  Gln-synt_N   3 kfvdlqFtDikgklkhvtipadelsedaleegvsFDGSsiegfaeieeSDmlLkPdlstavidPfreekktarvicd 79 
                 kf ++ ++D++g +++  +pa+++ e++ + g +F G   +   +    D+l +Pd+ t++++P+++e     + cd
  KOO23941.1  35 KFYQFSYVDLFGVQRSKLVPASRV-EEIATGGAGFAGFASHLDMDPTMGDLLAIPDPATLTPLPWQPEV--GWLSCD 108
                 8999********************.************88888999999******************854..555565 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (462 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       277  (0.0154498); expected 358.6 (0.02)
Passed bias filter:                      253  (0.0141112); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.51u 0.26s 00:00:00.77 Elapsed: 00:00:00.45
# Mc/sec: 3085.35
//
Query:       KOO23942.1  [L=657]
Description: ATP-binding cassette superfamily [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
      2e-32  112.4  22.8      2e-32  112.4  22.8    1.6  2  ABC2_membrane  ABC-2 type transporter
    1.2e-23   84.1   0.0    1.7e-23   83.7   0.0    1.2  1  ABC_tran       ABC transporter
    7.6e-08   32.5   0.0     0.0069   16.2   0.0    2.2  2  AAA_21         AAA domain, putative AbiEii toxin, Type IV TA 
    8.1e-05   22.2   0.0    0.00021   20.8   0.0    1.5  1  SMC_N          RecF/RecN/SMC N terminal domain
    0.00011   21.9   1.5    0.00016   21.3   0.5    1.7  2  AAA_29         P-loop containing region of AAA domain
     0.0015   18.9   0.1     0.0025   18.2   0.1    1.4  1  AAA_16         AAA ATPase domain
     0.0026   16.9   0.3      0.015   14.4   0.0    2.0  2  T2SSE          Type II/IV secretion system protein
     0.0072   16.8   0.1      0.012   16.1   0.1    1.3  1  AAA_23         AAA domain
  ------ inclusion threshold ------
      0.017   14.9   0.1      0.027   14.2   0.1    1.3  1  AAA_30         AAA domain
      0.019   14.9   0.1      0.019   14.9   0.1    2.9  3  PDR_CDR        CDR ABC transporter
       0.02   15.2   0.1      0.043   14.1   0.1    1.7  1  AAA_22         AAA domain
       0.02   15.3   0.0      0.043   14.2   0.0    1.5  1  AAA            ATPase family associated with various cellular
      0.021   14.8   0.1      0.038   13.9   0.1    1.3  1  RsgA_GTPase    RsgA GTPase
      0.022   14.7   0.0       0.04   13.8   0.0    1.4  1  NACHT          NACHT domain
      0.026   15.1   0.0      0.044   14.3   0.0    1.4  1  AAA_18         AAA domain
      0.058   13.3   0.0       0.26   11.2   0.0    2.0  2  NTPase_1       NTPase
       0.12   12.0   0.1        0.2   11.2   0.1    1.3  1  AAA_25         AAA domain
       0.17   12.1   0.0       0.31   11.2   0.0    1.5  1  AAA_33         AAA domain
       0.18   11.4   0.1       0.29   10.7   0.1    1.3  1  cobW           CobW/HypB/UreG, nucleotide-binding domain
       0.21   10.7   0.1       0.32   10.1   0.1    1.2  1  NB-ARC         NB-ARC domain


Domain annotation for each model (and alignments):
>> ABC2_membrane  ABC-2 type transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  112.4  22.8   2.2e-35     2e-32       3     210 .]     387     593 ..     385     593 .. 0.96
   2 ?   -4.1   1.3       9.5   8.5e+03     132     144 ..     634     646 ..     619     652 .. 0.43

  Alignments for each domain:
  == domain 1  score: 112.4 bits;  conditional E-value: 2.2e-35
  ABC2_membrane   3 ikallkreflqrwrdpslgllwrliqplllalvfgtvfgnlg...nsedglnrpgllffsvlflafsaltsvapvferergvlerelvsplyslsa 95 
                    + +l kr++l+ +r+p ++ ++r+++  +l+l++g+++  lg   + +++l+r+++lff + fl+ ++  +v p+f++er ++ re+ ++ ys+ a
     KOO23942.1 387 CVTLSKRNLLNNLRNPGIF-WVRFAMYTMLSLMIGLMYLELGddfSPSSVLSRINILFFVAAFLV-FMSVAVLPFFIIERATFLRERGNGSYSVGA 480
                    56899***********999.**********************987788888**************.6666666*********************** PP

  ABC2_membrane  96 yvlakvlvelpvsllqalifllivyflvgldlsrfflflllllltalaasslgllisalapsfedasqlaslvllpllllsGffipidsmpkwlqw 191
                    +vl++v + lp ++++al+ ++++++l  l+   f+++l++l + +++a +++ l +al+p++  ++ l+  v+ +++l+ Gffi +d++p w++w
     KOO23942.1 481 FVLSNVSMALPGIFVIALASTALIVPLAKLNG--FGIYLAALTAALFTAEGFMSLTGALVPHYIIGIALGAGVFGFFMLVEGFFIVKDDIPPWFIW 574
                    ***************************99999..********************************************************77**** PP

  ABC2_membrane 192 iaylnPltyavealrsnlf 210
                    ++yl + ty+++a+++n+f
     KOO23942.1 575 VHYLAFHTYIFRAFMANEF 593
                    *****************98 PP

  == domain 2  score: -4.1 bits;  conditional E-value: 9.5
  ABC2_membrane 132 lflllllltalaa 144
                     + + ++++a++a
     KOO23942.1 634 VVAFGFFFYAMYA 646
                    2222222222222 PP

>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   83.7   0.0   1.9e-26   1.7e-23       7     137 .]      91     238 ..      85     238 .. 0.91

  Alignments for each domain:
  == domain 1  score: 83.7 bits;  conditional E-value: 1.9e-26
                 EEETTSEEEEEESTTSSHHHHHHHHTTSS--..SEEEEEETTCEGGGB-HHHCCHCEEEE-SS--S-TTSBHHHH.............HHHTC....HH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.............xxxxx....xx RF
    ABC_tran   7 klkegekvaivGenGaGKStLlkllagllkp..teGeilldgkdlkeqeleslrkeigvlpqepqlfpeltvren.............esdee....ie 86 
                   + g ++a++G++G+GK+tLl ++ag +k     G+i++dg  l++   ++ ++ ++++ qe++l    tv e+             +s++e     +
  KOO23942.1  91 YAQSGDLLAVMGPSGSGKTTLLDAIAGRMKSaaVGGSITFDGSVLTD---SQHQAFVSYVAQEDSLLGVFTVSETlrmalrfrygynmKSEAElkslES 186
                 568899**********************9986678************...999999******************************8844444555578 PP

                 HHHHHSTTGGTTCBGESTTS.GGS-HHHHHHHHHHHHHHHTSSEEEEESTTT CS
                 xxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  87 kalsklglkelkdtvvkssp.ssLSgGqkqrvalarallkkpkllllDEpta 137
                 +al+ +gl+  + t+v++   + LSgGqk+r++la  l+k+pk+++lDEpt+
  KOO23942.1 187 HALKLVGLTSAAGTKVGDIFrKGLSGGQKRRLSLAVELVKAPKVMVLDEPTS 238
                 99999***********88779*****************************96 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.0   7.7e-06    0.0069       3      83 ..      99     180 ..      97     198 .. 0.66
   2 !   14.2   0.0   3.2e-05     0.029     237     299 ..     210     269 ..     199     271 .. 0.93

  Alignments for each domain:
  == domain 1  score: 16.2 bits;  conditional E-value: 7.7e-06
      AAA_21   3 vliGpNgsGKSnLLdaldllarldrdvegltdelsggggirkipslldlydpeip...fefeieeflsqgvryryglrlersqv 83 
                 ++ Gp gsGK++LLda+    r+ + + g+ ++++g++ ++++   + +y   ++   ++f+++e+l    r+ryg++ + ++ 
  KOO23942.1  99 AVMGPSGSGKTTLLDAIA--GRMKSAAVGGSITFDGSVLTDSQHQAFVSYVAQEDsllGVFTVSETLRMALRFRYGYNMKSEAE 180
                 677**************4..4555555555555555555555555555554444411146667777777777777777777766 PP

  == domain 2  score: 14.2 bits;  conditional E-value: 3.2e-05
      AAA_21 237 lSdGtkrllalltallralkkgsllliDEpEngLHPkllrrllellkelsrngaQviltTHSp 299
                 lS G+kr l l++ l  a+   ++ ++DEp +gL+ +    ++  l +l++ g  vi+t H+p
  KOO23942.1 210 LSGGQKRRLSLAVELVKAP---KVMVLDEPTSGLDSASAFGIMSSLTALAKLGHTVIATIHQP 269
                 799*****9*******999...9*************9999999999999999******99988 PP

>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.8   0.0   2.4e-07   0.00021      25     198 ..      96     267 ..      81     273 .. 0.73

  Alignments for each domain:
  == domain 1  score: 20.8 bits;  conditional E-value: 2.4e-07
                 SEEEEEESTTSSHHHHHHHHHHHCTT.TTTTTTCHCCCCCC--..BTTCSSTTEEEEEEEEEETTEE...SSSSSSCEEEEEEEETTSEEEEEETTEEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N  25 sftaivGpNGSGKsnlldAilFvLGersakklrseklsdlihk..skekasvkkaeveitfdnedkk...lkiekeevsisrrvkrkgeseykingkev 118
                  + a++Gp GSGK+ lldAi    G      ++s+ +   i+   s   +s+++a v+ + ++++     ++ e+ ++ ++ r   + +se +++  e 
  KOO23942.1  96 DLLAVMGPSGSGKTTLLDAI---AG-----RMKSAAVGGSITFdgSVLTDSQHQAFVSYVAQEDSLLgvfTVSETLRMALRFRYGYNMKSEAELKSLES 186
                 5679****************...45.....677888877777656667788899999997554444455333344457777777777788888887777 PP

                 -HHHHHHHHHCTT.....-STTCS-HHHHHHHHHHHHHHHHCCS--SEEEECTTTTTS-HHHHHHHHHHHHHHCTTSEEEEE-SS CS
                 xxxxxxxxxxxxx.....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N 119 tkkevsellesag.....iskelLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvkkvaellkeksknaQfivislr 198
                 +  ++  l + ag     i ++ LSgG+k  +     +A++ vk   +++lDe  + LD +    + + l +  k    ++ +++
  KOO23942.1 187 HALKLVGLTSAAGtkvgdIFRKGLSGGQKRRL----SLAVELVKAPKVMVLDEPTSGLDSASAFGIMSSLTALAKLGHTVIATIH 267
                 7777777766654222236677*******955....5567789999999***********9999998888888777666666655 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.3   0.5   1.8e-07   0.00016      23      43 ..      95     116 ..      88     123 .. 0.85
   2 ?   -3.4   0.0       9.4   8.4e+03       9      31 ..     274     294 ..     274     295 .. 0.62

  Alignments for each domain:
  == domain 1  score: 21.3 bits;  conditional E-value: 1.8e-07
      AAA_29  23 g.atlltGpsGsGKSTllDAiq 43 
                 g    ++GpsGsGK+TllDAi+
  KOO23942.1  95 GdLLAVMGPSGSGKTTLLDAIA 116
                 557789**************96 PP

  == domain 2  score: -3.4 bits;  conditional E-value: 9.4
      AAA_29   9 WgtfdghtieidlkgatlltGps 31 
                 W  fd+  + ++ +g tl+ G+s
  KOO23942.1 274 WTLFDKLLL-LS-EGRTLFFGES 294
                 666776433.33.4679999986 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.2   0.1   2.8e-06    0.0025      23      52 ..      94     126 ..      77     262 .. 0.77

  Alignments for each domain:
  == domain 1  score: 18.2 bits;  conditional E-value: 2.8e-06
      AAA_16  23 rpelvllsGesGvGKsslvrellralekd...g 52 
                 ++ l+ + G+sG+GK++l+++++ +++ +   g
  KOO23942.1  94 SGDLLAVMGPSGSGKTTLLDAIAGRMKSAavgG 126
                 337899****************99888884431 PP

>> T2SSE  Type II/IV secretion system protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.4   0.0   1.6e-05     0.015     130     199 ..      96     170 ..      66     171 .. 0.85
   2 ?   -0.1   0.0      0.44     4e+02     221     235 ..     257     270 ..     249     284 .. 0.80

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 1.6e-05
       T2SSE 130 glilvsGgTgsGKttllyallkeinks.derivtvEDpvEiqleganqvqlnak....kakvtfadllraaLRlr 199
                  l+ v G+ gsGKttll a+   +++      +t   +v ++ +++  v+ +a+     +  t+++ lr aLR r
  KOO23942.1  96 DLLAVMGPSGSGKTTLLDAIAGRMKSAaVGGSITFDGSVLTDSQHQAFVSYVAQedslLGVFTVSETLRMALRFR 170
                 567799******************999556778888899999999999999888788778889999999999976 PP

  == domain 2  score: -0.1 bits;  conditional E-value: 0.44
       T2SSE 221 nTGHlgslsTlHans 235
                 + GH + ++T+H  s
  KOO23942.1 257 KLGHTV-IATIHQPS 270
                 56****.*****765 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.1   1.4e-05     0.012      22      40 ..      98     116 ..      92     132 .. 0.91

  Alignments for each domain:
  == domain 1  score: 16.1 bits;  conditional E-value: 1.4e-05
      AAA_23  22 tlItGpNGaGKTTildAik 40 
                  ++ Gp G+GKTT+ldAi 
  KOO23942.1  98 LAVMGPSGSGKTTLLDAIA 116
                 5678*************96 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   0.1     3e-05     0.027      14      46 ..      92     123 ..      86     255 .. 0.76

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 3e-05
      AAA_30  14 ltsgdrvavltGpAGtGKttalkalreaweaag 46 
                 ++sgd + ++ Gp G+GKtt+l a++  +++a 
  KOO23942.1  92 AQSGD-LLAVMGPSGSGKTTLLDAIAGRMKSAA 123
                 56777.9999***************87766653 PP

>> PDR_CDR  CDR ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.0       1.7   1.5e+03      48      66 ..     400     418 ..     384     433 .. 0.76
   2 ?    1.2   0.2      0.38   3.4e+02      31      68 ..     420     457 ..     415     466 .. 0.76
   3 ?   14.9   0.1   2.1e-05     0.019      39      73 ..     620     654 ..     606     657 .] 0.82

  Alignments for each domain:
  == domain 1  score: -0.8 bits;  conditional E-value: 1.7
     PDR_CDR  48 rnfgiliaflifflalyll 66 
                 rn gi ++ ++++++l l+
  KOO23942.1 400 RNPGIFWVRFAMYTMLSLM 418
                 7777777777777666554 PP

  == domain 2  score: 1.2 bits;  conditional E-value: 0.38
     PDR_CDR  31 GddYlelsfgyssshlwrnfgiliaflifflalyllat 68 
                 G  Ylel  ++s+s +   + il+  ++f +++ + ++
  KOO23942.1 420 GLMYLELGDDFSPSSVLSRINILFFVAAFLVFMSVAVL 457
                 66789999999999999888888877777777766665 PP

  == domain 3  score: 14.9 bits;  conditional E-value: 2.1e-05
     PDR_CDR  39 fgyssshlwrnfgiliaflifflalyllatelisa 73 
                 ++     + r++gi++af +ff a+y+++++l++ 
  KOO23942.1 620 YSMADVAIGRDIGIVVAFGFFFYAMYAVVLQLFHT 654
                 556666677********************999875 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   0.1   4.8e-05     0.043       5      28 ..      95     118 ..      92     258 .. 0.90

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 4.8e-05
      AAA_22   5 agilvvtGesGtGKTtllrrlleq 28 
                   +l+v+G+sG+GKTtll  ++ +
  KOO23942.1  95 GDLLAVMGPSGSGKTTLLDAIAGR 118
                 5689*************9987755 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   0.0   4.9e-05     0.043       3      35 ..     100     136 ..      98     169 .. 0.73

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 4.9e-05
                 EESSTTSSHHHHHHHHHHHHTHE....EEEEETTTCS CS
         AAA   3 lyGppGtGKTllakavakelgve....fleisgsell 35 
                 ++Gp G GKT+l  a+a  +++      ++++gs l+
  KOO23942.1 100 VMGPSGSGKTTLLDAIAGRMKSAavggSITFDGSVLT 136
                 79*****************986533334555555555 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.1   4.3e-05     0.038      99     125 ..      95     121 ..      78     131 .. 0.84

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 4.3e-05
                  TSEEEEECSTTSSHHHHHHHHCTT--- CS
  RsgA_GTPase  99 dktsvlvGqSGvGKStLinallpelel 125
                  +++ +++G+SG GK+tL++a++++++ 
   KOO23942.1  95 GDLLAVMGPSGSGKTTLLDAIAGRMKS 121
                  477899****************98654 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.0   4.5e-05      0.04       2      27 ..      97     122 ..      96     146 .. 0.84

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 4.5e-05
                 CEEEEC-TTTCHHHHHHHHHHHHCTS CS
       NACHT   2 lvilqGeaGsGKTtLlqklalawaeg 27 
                 l+++ G++GsGKTtLl  +a  +++ 
  KOO23942.1  97 LLAVMGPSGSGKTTLLDAIAGRMKSA 122
                 6899***************9887765 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   0.0   4.9e-05     0.044       3      50 ..     100     163 ..      98     202 .. 0.79

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 4.9e-05
      AAA_18   3 ltGtpGvGKttlakeLskrlgf..................gvnlrdvakenglllevdpealdesk 50 
                 ++G++G+GKttl ++++ r+++                  ++   ++++++++ll+v+    +e++
  KOO23942.1 100 VMGPSGSGKTTLLDAIAGRMKSaavggsitfdgsvltdsqHQAFVSYVAQEDSLLGVFTV--SETL 163
                 89**************99986668888888888888888877777777777777777766..4444 PP

>> NTPase_1  NTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   0.00028      0.26       3      35 ..      99     129 ..      97     153 .. 0.86
   2 ?   -1.0   0.0       1.7   1.5e+03     116     137 ..     250     271 ..     216     282 .. 0.71

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00028
                 EEE--TTSSHHHHHHHHHHHH...GGGEEEEEE CS
    NTPase_1   3 fiTGppGvGKtTlvkkvlellkssgvkvgGfyt 35 
                 ++ Gp+G+GKtTl++ ++  +ks    vgG +t
  KOO23942.1  99 AVMGPSGSGKTTLLDAIAGRMKSA--AVGGSIT 129
                 688******************765..7788776 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 1.7
                 HHHHHHHTTTSEEEEE--SS-- CS
    NTPase_1 116 eaveevLksekpvlavihrrkd 137
                 ++++ + k +  v+a+ih++++
  KOO23942.1 250 SSLTALAKLGHTVIATIHQPSS 271
                 4555666688899999999963 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.1   0.00022       0.2      28      57 ..      90     119 ..      80     156 .. 0.76

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00022
      AAA_25  28 gllpagelallaGapgtGKttlaldlalav 57 
                 g+   g+l +++G++g+GKttl+  +a  +
  KOO23942.1  90 GYAQSGDLLAVMGPSGSGKTTLLDAIAGRM 119
                 6677899***************99988766 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   0.00034      0.31       2      22 ..      98     118 ..      97     184 .. 0.87

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00034
      AAA_33   2 vllvGlpGsGKstlaerllkk 22 
                 + + G++GsGK+tl++ ++ +
  KOO23942.1  98 LAVMGPSGSGKTTLLDAIAGR 118
                 6789**********9988755 PP

>> cobW  CobW/HypB/UreG, nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.1   0.00032      0.29       4      23 ..      99     118 ..      96     143 .. 0.80

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00032
                 EEEESTTCCHHHHHHHHHCT CS
        cobW   4 vltGflGsGKTtLlnhllen 23 
                  + G+ GsGKTtLl ++  +
  KOO23942.1  99 AVMGPSGSGKTTLLDAIAGR 118
                 689***********999833 PP

>> NB-ARC  NB-ARC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.1   0.00036      0.32      21      44 ..      96     119 ..      80     160 .. 0.78

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.00036
                 EEEEEEESTTSSHHHHHHHHCCSH CS
      NB-ARC  21 lvvalvGmgGvGKttlakqilnks 44 
                 +++a++G  G+GKttl+  i   +
  KOO23942.1  96 DLLAVMGPSGSGKTTLLDAIAGRM 119
                 589**************9997543 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (657 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       788  (0.0439511); expected 358.6 (0.02)
Passed bias filter:                      473  (0.0263818); expected 358.6 (0.02)
Passed Vit filter:                       107  (0.00596798); expected 17.9 (0.001)
Passed Fwd filter:                        20  (0.00111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              20  [number of targets reported over threshold]
# CPU time: 0.69u 0.29s 00:00:00.98 Elapsed: 00:00:00.46
# Mc/sec: 4305.63
//
Query:       KOO23943.1  [L=614]
Description: homoserine o-acetyltransferase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    7.7e-09   35.4   0.1      4e-08   33.0   0.1    1.9  1  Epimerase        NAD dependent epimerase/dehydratase family
    8.6e-09   35.4   0.0    3.6e-08   33.4   0.0    1.9  2  Abhydrolase_1    alpha/beta hydrolase fold
    0.00045   19.5   0.0        0.1   11.7   0.0    2.1  2  Polysacc_synt_2  Polysaccharide biosynthesis protein
     0.0005   19.3   0.0     0.0022   17.2   0.0    1.8  2  NAD_binding_4    Male sterility protein


Domain annotation for each model (and alignments):
>> Epimerase  NAD dependent epimerase/dehydratase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.0   0.1   8.9e-12     4e-08      78     235 ..       7     160 ..       3     167 .. 0.83

  Alignments for each domain:
  == domain 1  score: 33.0 bits;  conditional E-value: 8.9e-12
                 HHHHHSHHHHHHHHTHHHHHHHHHHHHHTCTEEEEEEEGGGGTSCSS.S.S...BSTCSTTS--...--SSHHHHHHHHHHHHHHHHHHHH.T-EEEEE CS
   Epimerase  78 aassedpadfieknlqgtlnlleaarkagvkrllflsSsevYGkdae.q.p...keettltgpl...kpnspYaaaKlageklveayaaqy.glnaiil 167
                 + +s +p+ ++++n++ t   ++aa +ag+ r++f sS+   G ++  + p      ++  ++l    p + Y+++Kl+ge+++e++a++   +++++l
  KOO23943.1   7 GYESATPSVLLRDNVASTAATCDAAIAAGASRFVFSSSAFAMGYSHAaIgPhawCPRYLPVDELhgaMPMETYGLSKLLGEEVLESAARTAtSTSFVSL 105
                 567889999******************************99997777644666633333333445579**********************999****** PP

                 EESEEESTTS-TTSTTSHHHHHHHHHHTTSSSEEEETTST-EEEEEEHHHHHHHHHHHHHHHTT-STT CS
   Epimerase 168 rlfnlyGprngegevsrvipalirkilegkqevtllgdgtalRdflyveDvaeaillvlehvdagdkg 235
                 r +n++        + + +p  + +++e   +++l+        + + +Dv+ea+++++++++a ++g
  KOO23943.1 106 RFTNIVKRE-----RWSSLPWPAPSAAEPL-PLILWA-------YTHEDDVIEAHVAAVTRPEAARPG 160
                 ****99766.....8888888888888888.888886.......999999999999999998886655 PP

>> Abhydrolase_1  alpha/beta hydrolase fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.4   0.0   7.9e-12   3.6e-08      15     136 ..     328     455 ..     312     464 .. 0.77
   2 ?   -1.4   0.0      0.33   1.5e+03     206     250 ..     539     587 ..     494     589 .. 0.69

  Alignments for each domain:
  == domain 1  score: 33.4 bits;  conditional E-value: 7.9e-12
                    GGTTGHHHHHHHHTTSEEEEEEETTSTTSSSTTTGB......CHHSHHHHHHHHH...HHHHHCTTS.....SEE.EEEETHHHHHHHHHHHHHGG CS
  Abhydrolase_1  15 vwaerglapaLakdgfdvillDlrGvgySspapacin.....ddygtasvaddld...rildalgdd.....klt.lvGhSmGGmialayaaeype 96 
                    ++++   +++L+ ++f+vi+++l+G+g S  ++  i+     +  +++sv+d ++   ++l++lg++     +l  + G+SmG ++a ++a   pe
     KOO23943.1 328 YQIG--PGQTLDTARFTVIVPNLLGNGVSYSPSL-IDpaaglP--PLFSVRDNVRaqrALLEHLGVGcskeaPLDlVYGYSMGALQAYEWAVAWPE 418
                    3444..78999999**************988886.55587662..666677777665377*****96555558999******************** PP

                    GEEEEEEESECSSCCHHHHHHHHHHHHHHCHHCHHHHHHH CS
  Abhydrolase_1  97 rVkalvllgaidpaaslieaqrqqaksfpdffdgyaadca 136
                    +V++++++++   aa  +e++r  + s   ++  +aa++a
     KOO23943.1 419 SVRRIAAVCG---AARCGELNRVFLGSIEAALKADAAWDA 455
                    **********...777777777777776666666666665 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 0.33
                    C..THHHHSEEEEEEETTCSSSCHHHHHHHHHCHTS..EEEEEEETCSS CS
  Abhydrolase_1 206 e..lknvlaptlvisgtsDplvppkaledlaqllpk..krlvvisdagH 250
                    +  l  v a +l++  ++D++++ ++ e+ a+ll +  +++ ++s agH
     KOO23943.1 539 RaaLGRVRARVLLMPCDQDRYFTLGEAEREAALLGDrcVFRPIVSAAGH 587
                    2555567779999999999999999999999998886667667777777 PP

>> Polysacc_synt_2  Polysaccharide biosynthesis protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.5   0.0    0.0018       8.2      98     128 ..      14      44 ..       7      51 .. 0.88
   2 !   11.7   0.0   2.3e-05       0.1     133     172 ..      74     111 ..      71     118 .. 0.92

  Alignments for each domain:
  == domain 1  score: 5.5 bits;  conditional E-value: 0.0018
                      HHHHHHHHHHHHHHHHHHHHTT-SEEEEEEE CS
  Polysacc_synt_2  98 leaiktNvlgtenvieaaieagvkkvvliSt 128
                         ++ Nv +t  +++aai+ag +++v+ S+
       KOO23943.1  14 SVLLRDNVASTAATCDAAIAAGASRFVFSSS 44 
                      556899*********************9997 PP

  == domain 2  score: 11.7 bits;  conditional E-value: 2.3e-05
                      S--SHHHHHHHHHHHHHHHGGG--SSS--EEEEEEE-EET CS
  Polysacc_synt_2 133 nPtnvmGatKrlaekllqalakeseekktkfvvvRfGNVl 172
                       P+ ++G++K+l e +l ++a+++  ++t fv  Rf N++
       KOO23943.1  74 MPMETYGLSKLLGEEVLESAARTA--TSTSFVSLRFTNIV 111
                      699*****************9999..89**********97 PP

>> NAD_binding_4  Male sterility protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   0.0   4.8e-07    0.0022     105     208 ..      14     112 ..       9     136 .. 0.77
   2 ?   -1.1   0.0      0.19   8.5e+02      58      85 ..     197     224 ..     182     230 .. 0.83

  Alignments for each domain:
  == domain 1  score: 17.2 bits;  conditional E-value: 4.8e-07
                    SEEHHHHHHHHHHHHHHHTSSS--.-EEEEEEGGGTTS-TTT--SSS-H......HHH--EEEETTTCCC.HHHHHHHHHHHHHHHHHHHH---.E CS
  NAD_binding_4 105 kellrvNveGtrevlelakklkklkvllhvSTayvngeregeveekvyeegekeekldederaklkglpn.tYeqsKalaEklvrearrrsglp.v 198
                    ++llr Nv +t   ++ a +  +   +++ S+a++ g+++ ++  ++          +    + ++ +p  tY  sK l+E+++++a+r  +   +
     KOO23943.1  14 SVLLRDNVASTAATCDAAIAAGAS-RFVFSSSAFAMGYSHAAIGPHAWC------PRYLPVDELHGAMPMeTYGLSKLLGEEVLESAARTATSTsF 102
                    57899**************98888.***************998666554......4444455555555555***************9976443314 PP

                    EEEEE-EEE- CS
  NAD_binding_4 199 vivRpsiitg 208
                    v +R ++i+ 
     KOO23943.1 103 VSLRFTNIVK 112
                    4466666665 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 0.19
                    HTTTEEEEE--TTSGGGG--HHHHHHHH CS
  NAD_binding_4  58 laerikvveGDlseprlGLseedlqela 85 
                    +a + +v+++D +++rlG+  +++++ a
     KOO23943.1 197 MAGNASVLCADKARERLGVAFRSWRQPA 224
                    5677899************999999865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (614 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       305  (0.0170115); expected 358.6 (0.02)
Passed bias filter:                      242  (0.0134977); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.55u 0.27s 00:00:00.82 Elapsed: 00:00:00.42
# Mc/sec: 4408.11
//
Query:       KOO23944.1  [L=309]
Description: phytanoyl- dioxygenase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      9e-23   81.6   0.0    1.3e-22   81.1   0.0    1.2  1  PhyH      Phytanoyl-CoA dioxygenase (PhyH)


Domain annotation for each model (and alignments):
>> PhyH  Phytanoyl-CoA dioxygenase (PhyH)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   81.1   0.0   7.1e-27   1.3e-22       1     204 [.      39     250 ..      39     259 .. 0.85

  Alignments for each domain:
  == domain 1  score: 81.1 bits;  conditional E-value: 7.1e-27
                 HHHHSEEEETTSS-HHHHHHHHHHHHHH..HHHCHTTCCSEEEEECEEESTTCCCEECCCHHCHHHHTTHHHHHHHHHHHHTSCEEEEEEEEEEEEE.. CS
        PhyH   1 feedGylviegflsaeevealraeieal..ldralesgdkidfffeekaaadedglleksinkvghflhprkvadlvrailgqdvyvaavlqsmyqd.. 95 
                 f +dG++v++g++ + +ve lra++e    +   l ++++      +++++d+  +  +++ + + +lh     +l+  ++g+ ++        ++d  
  KOO23944.1  39 FSKDGAIVLRGVFQP-WVEHLRAGAELNlaNPGPLCDEHAAAQGTSGRFHDDQFLWR-RHELFKEFVLHS-GAGALAAKAMGSQTAH------IFYDql 128
                 679************.9**99999887544666677777777777778888877777.999999999999.9999999999999863......444446 PP

                 EEE-TTTCB-EEEEE-SGGGSTEESGCCEEEEEEESS-B-TTBT-EEEETTGGGS-CCGTCCHHCSGCCTTS...................CCCTTTGH CS
        PhyH  96 ifkqpkiGgevqpwHqDstflptdpeesvvgvwialedateenGclrfiPGSHkweegplrrrlpeddteae...................ddeakked 175
                 ++k+p++  ++ pwH D  +++t+   +++++wial+++++e+G l+++ GSH+w  g l +r++++++ +                     d    + 
  KOO23944.1 129 FVKEPGTPSPT-PWHNDTSYWHTR-GSQICSIWIALDPVPRERG-LSYVKGSHRW--G-LVHRITNFSGGDHsgkntysdvdpaqlppvpdVDAGVASG 221
                 88999555555.************.6*****************9.**********..6.5689999999888999**************9988888999 PP

                 GSCEEEE.BTTTEEEEEETTSEEEE-TB. CS
        PhyH 176 eeeavpvevkaGdavlfhgrllHgsgaNr 204
                  +e   +++++Gd++lf ++ +Hg+  N 
  KOO23944.1 222 AYELLGWDMQPGDLLLFYSAMMHGAPGNP 250
                 9************************9994 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (309 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       262  (0.0146132); expected 358.6 (0.02)
Passed bias filter:                      238  (0.0132746); expected 358.6 (0.02)
Passed Vit filter:                         9  (0.00050198); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.24s 00:00:00.67 Elapsed: 00:00:00.40
# Mc/sec: 2303.78
//
Query:       KOO23945.1  [L=461]
Description: hypothetical protein Ctob_000323 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.12   12.9   0.0       0.34   11.5   0.0    1.8  1  TipAS     TipAS antibiotic-recognition domain


Domain annotation for each model (and alignments):
>> TipAS  TipAS antibiotic-recognition domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   1.9e-05      0.34      74     117 .]     105     150 ..      81     150 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 1.9e-05
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXX..XXXXXXXXXXXXXX CS
       TipAS  74 wgecskeilaglgqmYvadprftenydkkg..eglaeflrdAikay 117
                  + c++++ a   ++++++p+f++++++ +  ++la fl++A++ y
  KOO23945.1 105 LDGCEEAYSAIASEFHAENPDFQRFVESGAlePELATFLEEALAKY 150
                 345999999999***************998889**********988 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (461 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       522  (0.0291148); expected 358.6 (0.02)
Passed bias filter:                      308  (0.0171789); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.27s 00:00:00.76 Elapsed: 00:00:00.43
# Mc/sec: 3254.64
//
Query:       KOO23946.1  [L=35]
Description: hypothetical protein Ctob_000321, partial [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.18   11.8   0.0       0.18   11.8   0.0    1.1  1  CorC_HlyC  Transporter associated domain


Domain annotation for each model (and alignments):
>> CorC_HlyC  Transporter associated domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   9.9e-06      0.18      35      53 ..       1      19 [.       1      31 [. 0.88

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 9.9e-06
                HHHHHHHHH-S---TT-EE CS
   CorC_HlyC 35 lgGlllellgriPkegesv 53
                ++G++l++ g +P  g+++
  KOO23946.1  1 MSGFVLTKVGAVPVHGDTM 19
                59***************54 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (35 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       102  (0.00568911); expected 358.6 (0.02)
Passed bias filter:                       90  (0.0050198); expected 358.6 (0.02)
Passed Vit filter:                         1  (5.57756e-05); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.31u 0.22s 00:00:00.53 Elapsed: 00:00:00.36
# Mc/sec: 288.06
//
Query:       KOO23947.1  [L=456]
Description: hypothetical protein Ctob_000324 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (456 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       232  (0.0129399); expected 358.6 (0.02)
Passed bias filter:                      213  (0.0118802); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.44u 0.24s 00:00:00.68 Elapsed: 00:00:00.38
# Mc/sec: 3608.92
//
Query:       KOO23948.1  [L=187]
Description: hypothetical protein Ctob_000322 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    0.00054   19.6   0.3    0.00075   19.1   0.3    1.1  1  Stevor    Subtelomeric Variable Open Reading frame


Domain annotation for each model (and alignments):
>> Stevor  Subtelomeric Variable Open Reading frame
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.1   0.3   4.2e-08   0.00075     156     262 ..      44     156 ..      34     161 .. 0.63

  Alignments for each domain:
  == domain 1  score: 19.1 bits;  conditional E-value: 4.2e-08
      Stevor 156 csvgsvlltligla..aakaaavaakvalsaealkklasslsilnlfsesslesalkaavsaaaa...sdlagtaasaassafepygiaalvllilav. 248
                  s +s+++t+  ++  aa+aa+v+ +v++  +a +++++sl+  n   +s   s ++a v+a+++   + +++ +a+  + +f  +gia++v+l +++ 
  KOO23948.1  44 QSASSIIVTNKIVVpdAASAATVSNSVQAIVAAPQAFTTSLQQSNPAFASVQVSGITAPVIATILvpnQIYVQPVAQEPQKVFPDWGIAVFVILAVVLg 142
                 577888887644432255555555566666667777777777666544444444555444444431103344555888899********9998876654 PP

      Stevor 249 vliiLYiwlyrRRK 262
                  l  L+ w+ rR +
  KOO23948.1 143 SLCALFYWVVRRER 156
                 6899****998854 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (187 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       824  (0.0459591); expected 358.6 (0.02)
Passed bias filter:                      470  (0.0262145); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.26s 00:00:00.67 Elapsed: 00:00:00.41
# Mc/sec: 1360.00
//
Query:       KOO23949.1  [L=1351]
Description: serine-protein kinase atm, partial [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.5e-45  155.3   0.0    3.7e-45  154.7   0.0    1.2  1  PI3_PI4_kinase  Phosphatidylinositol 3- and 4-kinase
    3.6e-13   49.1   0.0    7.1e-13   48.1   0.0    1.5  1  FATC            FATC domain


Domain annotation for each model (and alignments):
>> PI3_PI4_kinase  Phosphatidylinositol 3- and 4-kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  154.7   0.0   4.1e-49   3.7e-45       5     249 ..    1006    1258 ..    1004    1259 .. 0.91

  Alignments for each domain:
  == domain 1  score: 154.7 bits;  conditional E-value: 4.1e-49
                      EEECSSCHHHHHHHHHHHHHHHHHHHHTTTTCCCT-------EEESSSSEEEEE--TTEEEHHHHHHHHHHHCTTSTCHHHHH......HHHH CS
  PI3_PI4_kinase    5 iykvgddlrqdelivqvfklmdeelskennpkrrklalktysviplgrkcgiielvassetaaslldeklekkgvpptasves......lrva 91  
                      ++k++ddlr d l+ q f++++ +l ++  +++r l ++ty+v+pl++ +g++++v+ + ++a+ l   +e   ++p+ +  s      ++++
      KOO23949.1 1006 LLKGRDDLRGDALMQQAFGVLNLLLGRDAATRQRALRMRTYRVVPLSPTAGVLQWVDDTMPLAHFLVSAHER--YRPNDMKHSaarvcmAEAH 1096
                      5799*****************************************************************975..6666666665666664444 PP

                      CHCHCCHHHHHCC......HHHHHHTSSTTHHHHHHHHHSSSHHHHHHHHHHHHHHHHHHHHHHHHHT-TT--TTTEEEETTTSEEEESSTTT CS
  PI3_PI4_kinase   92 ldkkklkkekklk......fekrtalkpksgllqeFvkkspsaeewlearkqFvrslaklsvldyilgngDRhldNilvdktsgklihIDfGl 178 
                       +  + ++++ +        ++  a+    + +++F +++  +  w+++r  +++s+a  s+++y+lg+gDRh++Nil+dk s +l+hID G+
      KOO23949.1 1097 KQVADAAAKGGPSvecrlnAYQHVAERLRPVFHHFFLERYLAPALWFSRRLAYASSVAAGSMVGYVLGLGDRHSSNILIDKGSAELVHIDLGI 1189
                      44444444444448899999999999******************************************************************* PP

                      CCTCSHCSSSS-.SSSSSS-THHHHHHTSTTCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHCCSSC CS
  PI3_PI4_kinase  179 ilpdewkllpfpqekvPfrltrelvlaidpskdeglfresceealealrrdqnlltrllkkavkdglilwe 249 
                      ++ d+++ll+ p e vPfrltr+l + ++ s+ eg++r   e+++++lr +++ l+++l+ +v+++l  w+
      KOO23949.1 1190 AF-DAGRLLKTP-ECVPFRLTRDLEDGLGVSGVEGMLRGAAEHTMRVLRANAGALVTILEVFVRNPLYKWQ 1258
                      **.*********.********************************************************97 PP

>> FATC  FATC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.1   0.0   7.9e-17   7.1e-13       2      32 .]    1321    1351 .]    1320    1351 .] 0.96

  Alignments for each domain:
  == domain 1  score: 48.1 bits;  conditional E-value: 7.9e-17
        FATC    2 LsveqQVdrLIkeATdpeNLaqmyiGWcPww 32  
                  L ve+QV  L +eA dpeNL++my GW++w+
  KOO23949.1 1321 LAVEGQVRALLDEARDPENLCRMYDGWAAWL 1351
                  88****************************7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1351 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       791  (0.0441185); expected 358.6 (0.02)
Passed bias filter:                      411  (0.0229238); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.80u 0.30s 00:00:01.10 Elapsed: 00:00:00.43
# Mc/sec: 9417.93
//
Query:       KOO23950.1  [L=696]
Description: hypothetical protein Ctob_004808 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
  ------ inclusion threshold ------
        4.5    6.9  10.6        8.1    6.1   2.0    2.8  2  UBM           Ubiquitin binding region
        5.6    7.1  14.0         13    5.9  14.0    1.5  1  MnmE_helical  MnmE helical domain


Domain annotation for each model (and alignments):
>> UBM  Ubiquitin binding region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.1   1.6    0.0018        16      19      34 ..      38      53 ..      38      54 .. 0.90
   2 ?    6.1   2.0    0.0009       8.1      19      34 ..      59      74 ..      59      75 .. 0.90

  Alignments for each domain:
  == domain 1  score: 5.1 bits;  conditional E-value: 0.0018
         UBM 19 pdLReEVLaqqdeeql 34
                ++LReE+ +q++++ +
  KOO23950.1 38 ESLREEIARQHEQSER 53
                79**********9976 PP

  == domain 2  score: 6.1 bits;  conditional E-value: 0.0009
         UBM 19 pdLReEVLaqqdeeql 34
                ++LReE+ +q++++ +
  KOO23950.1 59 ESLREEIAQQHEQSER 74
                79**********9876 PP

>> MnmE_helical  MnmE helical domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.9  14.0    0.0014        13      62     195 ..      28     165 ..       9     167 .. 0.76

  Alignments for each domain:
  == domain 1  score: 5.9 bits;  conditional E-value: 0.0014
                   xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx......xxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxx.xxxxxxxxxxxxxx RF
  MnmE_helical  62 lseeelaekleelkeelekllatakrgellreGikDllkeke......ekeeeevlkiSaktgegieeLeeaike.leleei.eeeplltnaRhkea 150
                    ++e+ + + e+l+ee+ +  ++++r +   e ++    +++      ++e+e+  + S++ +++ ++L+e ++e  ++  i   ++  +na+   +
    KOO23950.1  28 EDSERHRLETESLREEIARQHEQSERHRQETESLREEIAQQHeqserhRRENESLRERSCAVEDESQHLRELLAEsHSQ--IeMMKKQSVNAKNFGL 122
                   455566667778888888888888887777777774222222355565555666668899999999*******883333..22335789******** PP

                   xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  MnmE_helical 151 lekalealeeakealeaglpldlvaedLrealeaLgeItGevvte 195
                   + +  + l+  +e l+++ + dl+ e+L++a+e ++e+++e + e
    KOO23950.1 123 VLDLRKDLQ--HERLARQVNNDLLKEQLQRATERIEELLKERERE 165
                   *********..899999999*******************998876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (696 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2140  (0.11936); expected 358.6 (0.02)
Passed bias filter:                      560  (0.0312343); expected 358.6 (0.02)
Passed Vit filter:                       102  (0.00568911); expected 17.9 (0.001)
Passed Fwd filter:                        18  (0.00100396); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.83u 0.34s 00:00:01.17 Elapsed: 00:00:00.49
# Mc/sec: 4266.76
//
Query:       KOO23951.1  [L=164]
Description: centrin [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    8.3e-36  118.9  20.2    1.2e-09   37.0   1.6    4.1  4  EF-hand_1        EF hand
    5.2e-31  106.9  11.8    5.8e-17   61.9   0.9    2.1  2  EF-hand_7        EF-hand domain pair
    3.8e-28   95.0  12.0    1.3e-09   37.2   0.1    4.3  4  EF-hand_6        EF-hand domain
    5.6e-26   90.2  13.0    1.1e-12   47.6   1.3    3.7  4  EF-hand_8        EF-hand domain pair
    1.5e-18   65.3  19.1    4.6e-06   25.9   0.2    4.5  4  EF-hand_5        EF hand
      1e-16   61.0   0.6    9.4e-08   32.3   0.1    2.1  2  EF-hand_9        EF-hand domain
    6.4e-07   29.3   9.3      0.072   13.1   0.8    3.3  3  EF-hand_4        Cytoskeletal-regulatory complex EF hand
    7.1e-05   22.7   2.3       0.04   13.7   0.2    2.1  2  SurA_N_3         SurA N-terminal domain
    0.00017   21.7   0.7       0.61   10.3   0.1    2.4  2  Dockerin_1       Dockerin type I domain
    0.00032   21.0   1.5        0.4   11.0   0.0    2.1  2  SPARC_Ca_bdg     Secreted protein acidic and rich in cysteine
    0.00051   20.3   2.1       0.17   12.2   0.3    2.5  2  EF-hand_14       EF-hand domain
      0.009   15.8   0.4      0.009   15.8   0.4    2.0  2  SUB1_ProdP9      SUB1 protease Prodomain ProdP9
  ------ inclusion threshold ------
      0.011   15.9   0.9         47    4.4   0.0    4.6  5  PMBR             Pseudomurein-binding repeat
      0.011   14.4   0.4       0.89    8.1   0.0    2.0  2  DUF853           Bacterial protein of unknown function (DUF85
      0.013   15.4   0.5      0.018   14.9   0.5    1.2  1  Sigma54_CBD      Sigma-54 factor, core binding domain
      0.016   15.1   3.5          1    9.2   0.8    2.7  2  SurA_N_2         SurA N-terminal domain
      0.031   14.2   4.8       0.08   12.9   0.1    2.7  3  TerB             Tellurite resistance protein TerB
      0.035   14.0   2.3        7.7    6.4   0.0    3.5  4  Caleosin         Caleosin related protein
      0.081   13.1   0.2      0.081   13.1   0.2    2.9  4  DUF3008          Protein of unknwon function (DUF3008)
      0.084   13.7   0.3         15    6.5   0.1    2.1  2  EF-hand_11       EF-hand domain
       0.11   12.8   0.8       0.33   11.3   0.3    2.0  2  FlgD             Flagellar hook capping protein - N-terminal 
       0.12   13.1   2.1        5.2    7.9   0.1    2.7  3  DUF3349          Protein of unknown function (DUF3349)
       0.16   11.3   2.9       0.23   10.8   1.0    2.1  1  LETM1            LETM1-like protein
       0.17   11.5   0.3       0.25   10.9   0.3    1.2  1  Glyco_transf_92  Glycosyltransferase family 92
       0.26   11.0   0.6        0.6    9.8   0.2    1.8  2  DUF21            Cyclin M transmembrane N-terminal domain
       0.31   10.8   0.4       0.31   10.8   0.4    3.6  4  SHOCT            Short C-terminal domain
          1   10.0   6.1       0.23   12.1   1.2    2.3  2  MgtE_N           MgtE intracellular N domain
        1.1    9.6   6.3        1.7    9.0   0.3    3.0  3  Gp-FAR-1         Nematode fatty acid retinoid binding protein
        1.3    8.9   6.0        2.1    8.3   1.6    3.0  3  EF-hand_10       EF hand
        1.5    9.1   4.7        1.4    9.1   0.1    2.9  3  SRI              SRI (Set2 Rpb1 interacting) domain


Domain annotation for each model (and alignments):
>> EF-hand_1  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.0   0.1   4.2e-12   2.5e-09       1      29 []      24      52 ..      24      52 .. 0.96
   2 !   37.0   1.6     2e-12   1.2e-09       1      28 [.      60      87 ..      60      88 .. 0.96
   3 !   22.3   0.3   9.8e-08   5.9e-05       1      28 [.      97     124 ..      97     125 .. 0.91
   4 !   35.6   1.4   5.7e-12   3.4e-09       1      28 [.     133     160 ..     133     161 .. 0.96

  Alignments for each domain:
  == domain 1  score: 36.0 bits;  conditional E-value: 4.2e-12
                HHHHHHHHHTTTSSSEEEHHHHHHHHHHH CS
   EF-hand_1  1 elkeiFrefDkDgdGkIdfeEfkellkkl 29
                e++e+F++fD+Dg+G+Id +E+k ++++l
  KOO23951.1 24 EIREAFDLFDTDGSGTIDAKELKVAMRAL 52
                79************************975 PP

  == domain 2  score: 37.0 bits;  conditional E-value: 2e-12
                HHHHHHHHHTTTSSSEEEHHHHHHHHHH CS
   EF-hand_1  1 elkeiFrefDkDgdGkIdfeEfkellkk 28
                e+k++++++DkDg+G+Idf+Ef++++++
  KOO23951.1 60 EIKKMIADIDKDGSGTIDFDEFLQMMTA 87
                79************************86 PP

  == domain 3  score: 22.3 bits;  conditional E-value: 9.8e-08
                 HHHHHHHHHTTTSSSEEEHHHHHHHHHH CS
   EF-hand_1   1 elkeiFrefDkDgdGkIdfeEfkellkk 28 
                 e+ ++Fr+fD D +GkI+f+ +k++ k+
  KOO23951.1  97 EILKAFRLFDDDETGKISFKNLKRVAKE 124
                 6889*******************99876 PP

  == domain 4  score: 35.6 bits;  conditional E-value: 5.7e-12
                 HHHHHHHHHTTTSSSEEEHHHHHHHHHH CS
   EF-hand_1   1 elkeiFrefDkDgdGkIdfeEfkellkk 28 
                 el+e+++e+D+DgdG I+ eEf++++kk
  KOO23951.1 133 ELQEMIDEADRDGDGEINEEEFLRIMKK 160
                 79************************98 PP

>> EF-hand_7  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.9   0.9   9.6e-20   5.8e-17       2      70 ..      23      85 ..      22      86 .. 0.96
   2 !   50.1   4.2   4.7e-16   2.8e-13       2      71 .]      96     159 ..      95     159 .. 0.97

  Alignments for each domain:
  == domain 1  score: 61.9 bits;  conditional E-value: 9.6e-20
   EF-hand_7  2 eklkeaFkelDtdgdgyldkeellrllrkifqgagegsklsdeelellfkefDtdkdGvisfdEFlkly 70
                ++++eaF+++Dtdg+g +d  el+ ++r        g+++ +ee+++++ ++D+d++G+i+fdEFl+++
  KOO23951.1 23 QEIREAFDLFDTDGSGTIDAKELKVAMR------ALGFEPKKEEIKKMIADIDKDGSGTIDFDEFLQMM 85
                789*********************9999......9*********************************9 PP

  == domain 2  score: 50.1 bits;  conditional E-value: 4.7e-16
   EF-hand_7   2 eklkeaFkelDtdgdgyldkeellrllrkifqgagegsklsdeelellfkefDtdkdGvisfdEFlklyr 71 
                 e++  aF+++D d +g+++   l+r+ +      + g++++deel+++++e D d+dG+i+ +EFl++++
  KOO23951.1  96 EEILKAFRLFDDDETGKISFKNLKRVAK------ELGENMTDEELQEMIDEADRDGDGEINEEEFLRIMK 159
                 78999***********************......*********************************996 PP

>> EF-hand_6  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.2   0.1   2.1e-12   1.3e-09       1      31 []      24      53 ..      24      53 .. 0.96
   2 !   23.0   0.2   7.9e-08   4.7e-05       8      27 ..      67      86 ..      60      91 .. 0.86
   3 !   20.9   0.2   3.7e-07   0.00022       1      31 []      97     126 ..      97     126 .. 0.90
   4 !   20.0   0.2   6.9e-07   0.00041       2      28 ..     134     160 ..     133     163 .. 0.88

  Alignments for each domain:
  == domain 1  score: 37.2 bits;  conditional E-value: 2.1e-12
   EF-hand_6  1 elreaFklfDkdgdGkidaeElrkalrkalg 31
                e+reaF+lfD+dg+G+ida+El+ a+r alg
  KOO23951.1 24 EIREAFDLFDTDGSGTIDAKELKVAMR-ALG 53
                79*************************.887 PP

  == domain 2  score: 23.0 bits;  conditional E-value: 7.9e-08
   EF-hand_6  8 lfDkdgdGkidaeElrkalr 27
                 +Dkdg+G+id++E+ ++++
  KOO23951.1 67 DIDKDGSGTIDFDEFLQMMT 86
                68****************98 PP

  == domain 3  score: 20.9 bits;  conditional E-value: 3.7e-07
   EF-hand_6   1 elreaFklfDkdgdGkidaeElrkalrkalg 31 
                 e+ +aF+lfD d +Gki+++ l+++ + +lg
  KOO23951.1  97 EILKAFRLFDDDETGKISFKNLKRVAK-ELG 126
                 5789*******************9988.665 PP

  == domain 4  score: 20.0 bits;  conditional E-value: 6.9e-07
   EF-hand_6   2 lreaFklfDkdgdGkidaeElrkalrk 28 
                 l+e  ++ D+dgdG+i+ eE+ ++++k
  KOO23951.1 134 LQEMIDEADRDGDGEINEEEFLRIMKK 160
                 77788899*****************95 PP

>> EF-hand_8  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.6   0.2   5.5e-08   3.3e-05      25      52 ..      22      49 ..       8      50 .. 0.92
   2 !   38.8   0.6     1e-12     6e-10       2      53 ..      37      86 ..      37      88 .. 0.96
   3 !    8.8   0.1    0.0024       1.5      32      46 ..     102     116 ..      94     117 .. 0.87
   4 !   47.6   1.3   1.8e-15   1.1e-12       1      54 [.     109     160 ..     109     161 .. 0.95

  Alignments for each domain:
  == domain 1  score: 23.6 bits;  conditional E-value: 5.5e-08
   EF-hand_8 25 eeevdilfrefDtdgdGkisfeEFcvll 52
                ++e+++ f++fDtdg+G+i+ +E  v +
  KOO23951.1 22 KQEIREAFDLFDTDGSGTIDAKELKVAM 49
                79*********************99988 PP

  == domain 2  score: 38.8 bits;  conditional E-value: 1e-12
   EF-hand_8  2 kgkItreelrrilrilglkkglseeevdilfrefDtdgdGkisfeEFcvlle 53
                +g I+  el+ ++r+lg +    +ee+  ++  +D dg+G+i+f+EF+++++
  KOO23951.1 37 SGTIDAKELKVAMRALGFE--PKKEEIKKMIADIDKDGSGTIDFDEFLQMMT 86
                589****************..*****************************96 PP

  == domain 3  score: 8.8 bits;  conditional E-value: 0.0024
   EF-hand_8  32 frefDtdgdGkisfe 46 
                 fr+fD d+ Gkisf+
  KOO23951.1 102 FRLFDDDETGKISFK 116
                 9************96 PP

  == domain 4  score: 47.6 bits;  conditional E-value: 1.8e-15
   EF-hand_8   1 ekgkItreelrrilrilglkkglseeevdilfrefDtdgdGkisfeEFcvller 54 
                 e+gkI++ +l+r ++ lg +  +++ee++++++e+D+dgdG i+ eEF+  +++
  KOO23951.1 109 ETGKISFKNLKRVAKELGEN--MTDEELQEMIDEADRDGDGEINEEEFLRIMKK 160
                 69**********99999*99..***************************99986 PP

>> EF-hand_5  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.9   0.2   7.7e-09   4.6e-06       1      22 [.      25      46 ..      25      49 .. 0.90
   2 !   22.2   1.1   1.2e-07   6.9e-05       2      25 .]      62      85 ..      61      85 .. 0.88
   3 !    8.7   0.2    0.0022       1.3       1      23 [.      99     120 ..      98     122 .. 0.82
   4 !   19.7   1.2   6.8e-07    0.0004       1      25 []     134     158 ..     132     159 .. 0.89

  Alignments for each domain:
  == domain 1  score: 25.9 bits;  conditional E-value: 7.7e-09
                HHHHHHHH-SS-SSCE-HHHHH CS
   EF-hand_5  1 lkdtFqaiDlNgDGkIskeELk 22
                ++++F+ +D++g+G+I++ ELk
  KOO23951.1 25 IREAFDLFDTDGSGTIDAKELK 46
                5778*****************8 PP

  == domain 2  score: 22.2 bits;  conditional E-value: 1.2e-07
                HHHHHHH-SS-SSCE-HHHHHHHH CS
   EF-hand_5  2 kdtFqaiDlNgDGkIskeELktlv 25
                k++   iD++g+G+I+++E+ +++
  KOO23951.1 62 KKMIADIDKDGSGTIDFDEFLQMM 85
                677788**************9986 PP

  == domain 3  score: 8.7 bits;  conditional E-value: 0.0022
                 HHHHHHHH-SS-SSCE-HHHHHH CS
   EF-hand_5   1 lkdtFqaiDlNgDGkIskeELkt 23 
                 lk+ F+ +D +  GkIs+  Lk+
  KOO23951.1  99 LKA-FRLFDDDETGKISFKNLKR 120
                 456.*************976665 PP

  == domain 4  score: 19.7 bits;  conditional E-value: 6.8e-07
                 HHHHHHHH-SS-SSCE-HHHHHHHH CS
   EF-hand_5   1 lkdtFqaiDlNgDGkIskeELktlv 25 
                 l+++ +++D +gDG I+ eE+ +++
  KOO23951.1 134 LQEMIDEADRDGDGEINEEEFLRIM 158
                 5778899**************9865 PP

>> EF-hand_9  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.2   0.1   5.9e-09   3.5e-06       3      63 ..      28      86 ..      26      89 .. 0.96
   2 !   32.3   0.1   1.6e-10   9.4e-08       3      64 ..     101     160 ..     100     161 .. 0.93

  Alignments for each domain:
  == domain 1  score: 27.2 bits;  conditional E-value: 5.9e-09
   EF-hand_9  3 vFevcDtqktGrVpvsrlidyLravtaqdpeeseLeelakelDPdgedasvdldtflrvmr 63
                 F+++Dt+  G++  ++l+  +ra +  +p+  e+ +  + +D dg  +++d+d fl++m 
  KOO23951.1 28 AFDLFDTDGSGTIDAKELKVAMRALGF-EPKKEEIKKMIADIDKDGS-GTIDFDEFLQMMT 86
                5**************************.*******************.***********97 PP

  == domain 2  score: 32.3 bits;  conditional E-value: 1.6e-10
   EF-hand_9   3 vFevcDtqktGrVpvsrlidyLravtaqdpeeseLeelakelDPdgedasvdldtflrvmre 64 
                  F+++D ++tG++  ++l+ + +  +++  ++ eL+e   e+D dg  ++++ + flr+m++
  KOO23951.1 101 AFRLFDDDETGKISFKNLKRVAKELGEN-MTDEELQEMIDEADRDGD-GEINEEEFLRIMKK 160
                 5**************************5.56779************9.************96 PP

>> EF-hand_4  Cytoskeletal-regulatory complex EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.3   0.0   0.00088      0.52      41      71 ..      21      51 ..      12      64 .. 0.83
   2 !   10.7   0.6   0.00067       0.4      50      69 ..      64      85 ..      53      91 .. 0.76
   3 !   13.1   0.8   0.00012     0.072       8      70 ..      97     159 ..      87     162 .. 0.72

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.00088
   EF-hand_4 41 eedklekiwdladidedgkldfeefciamrl 71
                +++++ + +dl d d  g++d +e+ +amr 
  KOO23951.1 21 QKQEIREAFDLFDTDGSGTIDAKELKVAMRA 51
                456677889********************95 PP

  == domain 2  score: 10.7 bits;  conditional E-value: 0.00067
   EF-hand_4 50 dladidedg..kldfeefciam 69
                 +adid+dg  ++df+ef  +m
  KOO23951.1 64 MIADIDKDGsgTIDFDEFLQMM 85
                479999996337******9887 PP

  == domain 3  score: 13.1 bits;  conditional E-value: 0.00012
   EF-hand_4   8 eikkyweifsglkpednkltgdkvapvlkn..skleedklekiwdladidedgkldfeefciamr 70 
                 ei k + +f     e  k++ +++  v k+   ++++++l+++ d ad d dg+++ eef  +m+
  KOO23951.1  97 EILKAFRLFDDD--ETGKISFKNLKRVAKElgENMTDEELQEMIDEADRDGDGEINEEEFLRIMK 159
                 455555555543..34455555555555542268999***********************99997 PP

>> SurA_N_3  SurA N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.7   0.2   6.7e-05      0.04      90     151 ..      38      97 ..      15     106 .. 0.82
   2 !    9.1   0.3    0.0017         1      92     141 ..     113     161 ..      92     163 .. 0.86

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 6.7e-05
    SurA_N_3  90 qlidealllqeakklglsvsdeevakeiasipaFq.edGkFdkerYkqlLaangltpeefeas 151
                   id + l+ +++ lg++ ++ee++k+ia+i+  +  +G  d +++ q++ a+ +++++ +++
  KOO23951.1  38 GTIDAKELKVAMRALGFEPKKEEIKKMIADID--KdGSGTIDFDEFLQMMTAK-MSEKDSREE 97 
                 5799999************************9..6458899******999875.455444444 PP

  == domain 2  score: 9.1 bits;  conditional E-value: 0.0017
    SurA_N_3  92 idealllqeakklglsvsdeevakeiasipaFq.edGkFdkerYkqlLaan 141
                 i+ + l+  ak+lg +++dee++++i + +  +  dG+ ++e++ ++++++
  KOO23951.1 113 ISFKNLKRVAKELGENMTDEELQEMIDEAD--RdGDGEINEEEFLRIMKKT 161
                 666778999*****************8887..6469********9999875 PP

>> Dockerin_1  Dockerin type I domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.7   0.0    0.0016      0.97       2      45 ..      32      74 ..      31      79 .. 0.92
   2 !   10.3   0.1     0.001      0.61      20      55 ..     123     159 ..     104     161 .. 0.77

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 0.0016
                TETTSSSC-SHHHHHHHHHHCTSSEBTTSCCCHGGGSTT-SSCE CS
  Dockerin_1  2 gDVNgDgkVnalDalliinylnqregqssssngkaaDvNgDGrv 45
                +D +g+g+++a  + +  ++l   e+++ ++++  aD+++DG+ 
  KOO23951.1 32 FDTDGSGTIDAKELKVAMRALG-FEPKKEEIKKMIADIDKDGSG 74
                6999999999999999999999.99*****************86 PP

  == domain 2  score: 10.3 bits;  conditional E-value: 0.001
                 HHCT.SSEBTTSCCCHGGGSTT-SSCESHHHHHHHHH CS
  Dockerin_1  20 nyln.qregqssssngkaaDvNgDGrvnalDallvin 55 
                 ++l  + ++++ +++ + aD +gDG++n   +l++++
  KOO23951.1 123 KELGeNMTDEELQEMIDEADRDGDGEINEEEFLRIMK 159
                 55555556777889999************99999876 PP

>> SPARC_Ca_bdg  Secreted protein acidic and rich in cysteine Ca binding region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.0   0.0   0.00068       0.4      43     111 ..      12      82 ..       4      84 .. 0.84
   2 !    9.5   0.5     0.002       1.2      48     111 ..      90     155 ..      82     157 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00068
  SPARC_Ca_bdg  43 keeeknlkeckepvawkFsklDtnsdkvlsksELaplrapl..vklehCikpflescDadkdkkislkEwc 111
                     + + ++e k++++  F+ +Dt+  ++++ +EL+     l   +  + ik+++   D d  ++i+  E+ 
    KOO23951.1  12 TGKAELTEEQKQEIREAFDLFDTDGSGTIDAKELKVAMRALgfEPKKEEIKKMIADIDKDGSGTIDFDEFL 82 
                   556677889999**********************965544433678889********************97 PP

  == domain 2  score: 9.5 bits;  conditional E-value: 0.002
  SPARC_Ca_bdg  48 nlkeckepvawkFsklDtnsdkvlsksELaplraplvkl..ehCikpflescDadkdkkislkEwc 111
                   + k  +e++   F  +D ++ + +s + L+ + ++l ++  ++  +++++++D d d++i+ +E+ 
    KOO23951.1  90 SEKDSREEILKAFRLFDDDETGKISFKNLKRVAKELGENmtDEELQEMIDEADRDGDGEINEEEFL 155
                   4556677888899999***99************99965322778999*****************97 PP

>> EF-hand_14  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.5   0.1    0.0084         5       6      48 ..      29      71 ..      26      94 .. 0.87
   2 !   12.2   0.3   0.00029      0.17       6      46 ..     102     142 ..      95     161 .. 0.88

  Alignments for each domain:
  == domain 1  score: 7.5 bits;  conditional E-value: 0.0084
  EF-hand_14  6 fdlfkdeetdklsvakllkaLaetGirkdDpRLkellkklkkv 48
                fdlf++++++++  ++l  a+++ G + +   +k+++  + k 
  KOO23951.1 29 FDLFDTDGSGTIDAKELKVAMRALGFEPKKEEIKKMIADIDKD 71
                9**************************9999999999888775 PP

  == domain 2  score: 12.2 bits;  conditional E-value: 0.00029
  EF-hand_14   6 fdlfkdeetdklsvakllkaLaetGirkdDpRLkellkklk 46 
                 f lf+d+et+k+s+++l ++ +e G + +D  L+e++++  
  KOO23951.1 102 FRLFDDDETGKISFKNLKRVAKELGENMTDEELQEMIDEAD 142
                 99**********************************98765 PP

>> SUB1_ProdP9  SUB1 protease Prodomain ProdP9
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.3   0.1       1.6   9.5e+02      40      65 ..      60      86 ..      53      96 .. 0.68
   2 !   15.8   0.4   1.5e-05     0.009      33      68 ..     111     145 ..      96     152 .. 0.87

  Alignments for each domain:
  == domain 1  score: -0.3 bits;  conditional E-value: 1.6
  SUB1_ProdP9 40 nlksiiielkedttde.elieyikile 65
                 ++k +i ++++d +   ++ e+++++ 
   KOO23951.1 60 EIKKMIADIDKDGSGTiDFDEFLQMMT 86
                 689999999888543224555555555 PP

  == domain 2  score: 15.8 bits;  conditional E-value: 1.5e-05
  SUB1_ProdP9  33 GklanlknlksiiielkedttdeelieyikileekG 68 
                  Gk++ +knlk +  el e++tdeel e i+  ++ G
   KOO23951.1 111 GKIS-FKNLKRVAKELGENMTDEELQEMIDEADRDG 145
                  5554.7**********************98777766 PP

>> PMBR  Pseudomurein-binding repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.4   0.0       2.6   1.6e+03       7      17 ..      58      68 ..      58      69 .. 0.88
   2 ?    4.4   0.0     0.079        47       1      13 [.      72      84 ..      72      85 .. 0.93
   3 ?    0.1   0.0       1.7     1e+03       6      15 ..      94     103 ..      94     104 .. 0.90
   4 ?    4.0   0.0      0.11        64       2      21 ..     110     129 ..     109     132 .. 0.86
   5 ?    0.1   0.0       1.8   1.1e+03       2      17 ..     146     161 ..     145     164 .] 0.80

  Alignments for each domain:
  == domain 1  score: -0.4 bits;  conditional E-value: 2.6
        PMBR  7 yeeyldmasrv 17
                +ee+++m++++
  KOO23951.1 58 KEEIKKMIADI 68
                69*****9986 PP

  == domain 2  score: 4.4 bits;  conditional E-value: 0.079
        PMBR  1 gsgkisyeeyldm 13
                gsg+i ++e+l+m
  KOO23951.1 72 GSGTIDFDEFLQM 84
                69*********99 PP

  == domain 3  score: 0.1 bits;  conditional E-value: 1.7
        PMBR   6 syeeyldmas 15 
                 s+ee+l++++
  KOO23951.1  94 SREEILKAFR 103
                 89*****996 PP

  == domain 4  score: 4.0 bits;  conditional E-value: 0.11
        PMBR   2 sgkisyeeyldmasrvlafi 21 
                 +gkis+ +++++a++   ++
  KOO23951.1 110 TGKISFKNLKRVAKELGENM 129
                 69***********9977666 PP

  == domain 5  score: 0.1 bits;  conditional E-value: 1.8
        PMBR   2 sgkisyeeyldmasrv 17 
                 +g i  ee+l++ ++ 
  KOO23951.1 146 DGEINEEEFLRIMKKT 161
                 689999****998775 PP

>> DUF853  Bacterial protein of unknown function (DUF853)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.1   0.0    0.0015      0.89     123     181 ..      16      76 ..      14      79 .. 0.82
   2 ?    4.6   0.1     0.017        10     117     167 ..      85     133 ..      78     142 .. 0.80

  Alignments for each domain:
  == domain 1  score: 8.1 bits;  conditional E-value: 0.0015
      DUF853 123 elndvqegvLnivfriadeeGllLldlkdLrallkevadna..kelskqygnvskasvgai 181
                 el++ q+  +  +f + d +G   +d k+L+  ++ ++ ++  +e++k  + + k   g+i
  KOO23951.1  16 ELTEEQKQEIREAFDLFDTDGSGTIDAKELKVAMRALGFEPkkEEIKKMIADIDKDGSGTI 76 
                 78999999****************************9755511566777777777777666 PP

  == domain 2  score: 4.6 bits;  conditional E-value: 0.017
      DUF853 117 lLarllelndvqegvLnivfriadeeGllLldlkdLrallkevadnakels 167
                 + a++   +d++e +L+ +fr+ d++    + +k+L+ + ke+++n  + +
  KOO23951.1  85 MTAKM-SEKDSREEILK-AFRLFDDDETGKISFKNLKRVAKELGENMTDEE 133
                 44444.45788888887.7*************************9976654 PP

>> Sigma54_CBD  Sigma-54 factor, core binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.9   0.5     3e-05     0.018      24     128 ..      16     140 ..      12     143 .. 0.77

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 3e-05
  Sigma54_CBD  24 elseeereiaeylienLdedGYleesleeiaeel....eeeeveavlkliqsldPaGvgArdlqEcLllQl...k..........aeali.eehlell 103
                  el+ee+++ ++   +  d dG  + +++e+   +     e + e++ k+i  +d  G g+ d  E+L +     +          a +l  +++  ++
   KOO23951.1  16 ELTEEQKQEIREAFDLFDTDGSGTIDAKELKVAMralgFEPKKEEIKKMIADIDKDGSGTIDFDEFLQMMTakmSekdsreeilkAFRLFdDDETGKI 113
                  5777777888888888999999998888887777667866677899*********************9988655156776666665555524566677 PP

  Sigma54_CBD 104 akkdlkklakklgl..seeelqealel 128
                  + k+lk++ak+lg   ++eelqe++++
   KOO23951.1 114 SFKNLKRVAKELGEnmTDEELQEMIDE 140
                  78999999**997544999****9986 PP

>> SurA_N_2  SurA N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.3   0.2     0.013       7.9      93     142 ..      39      82 ..      10      85 .. 0.79
   2 ?    9.2   0.8    0.0017         1      94     142 ..     113     155 ..      75     158 .. 0.78

  Alignments for each domain:
  == domain 1  score: 6.3 bits;  conditional E-value: 0.013
    SurA_N_2  93 lvseklleqeaeklGltvsdeelqdaiqgnpaikqsFqpetGkFdkeklk 142
                  ++ k l+ +++ lG++  +ee++++i  +        +  G +d +++ 
  KOO23951.1  39 TIDAKELKVAMRALGFEPKKEEIKKMIADIDK------DGSGTIDFDEFL 82 
                 688888999******************99666......455666555555 PP

  == domain 2  score: 9.2 bits;  conditional E-value: 0.0017
    SurA_N_2  94 vseklleqeaeklGltvsdeelqdaiqgnpaikqsFqpetGkFdkeklk 142
                 +s k l+  a++lG +++deelq++i +         + +G++++e++ 
  KOO23951.1 113 ISFKNLKRVAKELGENMTDEELQEMIDEADR------DGDGEINEEEFL 155
                 666778999*****************99776......577777777665 PP

>> TerB  Tellurite resistance protein TerB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.0       2.9   1.7e+03      61      78 ..      16      33 ..      12      39 .. 0.67
   2 ?   12.9   0.1   0.00013      0.08      42     106 ..      38     101 ..      35     103 .. 0.93
   3 ?    4.0   0.5     0.073        44      66     126 ..      97     156 ..      94     161 .. 0.59

  Alignments for each domain:
  == domain 1  score: -1.2 bits;  conditional E-value: 2.9
        TerB 61 glspeeakallelfeeae 78
                +l++e+ ++++e+f+ + 
  KOO23951.1 16 ELTEEQKQEIREAFDLFD 33
                566777777777776655 PP

  == domain 2  score: 12.9 bits;  conditional E-value: 0.00013
        TerB  42 gqvsesErqafrellksrfglspeeakallelfeeaeeeavdleqftralkrkls.peqrraliea 106
                 g+++++E +  ++ l   f+ ++ee+k+ ++  ++  + ++d+++f + + +k+s  + r+++++a
  KOO23951.1  38 GTIDAKELKVAMRAL--GFEPKKEEIKKMIADIDKDGSGTIDFDEFLQMMTAKMSeKDSREEILKA 101
                 8999***********..9999*********************************988999999876 PP

  == domain 3  score: 4.0 bits;  conditional E-value: 0.073
        TerB  66 eakallelfeeaeeeavdle...qftralkrklspeqrraliealweiAlADGeldeaEdavlr 126
                 e+ ++++lf++ e+ ++++    +++++l++++++e+++++i+     A  DG+ + +E+++lr
  KOO23951.1  97 EILKAFRLFDDDETGKISFKnlkRVAKELGENMTDEELQEMIDE----ADRDGDGEINEEEFLR 156
                 45556667777777677664111566666666667777766654....5556666666666665 PP

>> Caleosin  Caleosin related protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.4   0.0     0.013       7.7       6      36 ..      25      55 ..      20      57 .. 0.86
   2 ?    3.5   0.1       0.1        60      94     128 ..      60      94 ..      56     104 .. 0.84
   3 ?    1.6   0.0       0.4   2.4e+02      11      37 ..     103     129 ..      94     141 .. 0.74
   4 ?    0.0   0.0       1.2     7e+02       6     116 ..     134     155 ..     127     162 .. 0.51

  Alignments for each domain:
  == domain 1  score: 6.4 bits;  conditional E-value: 0.013
    Caleosin  6 LqqHvaFfDrdkdGiiypldtyrgfralgfn 36
                +++ ++ fD+d  G+i   +   ++ralgf+
  KOO23951.1 25 IREAFDLFDTDGSGTIDAKELKVAMRALGFE 55
                5566788**********************97 PP

  == domain 2  score: 3.5 bits;  conditional E-value: 0.1
    Caleosin  94 kfeeifskyakekkdaltlkevlellkgqrealDl 128
                 +  ++ +  +k+ ++++ ++e+l+++++++  +D 
  KOO23951.1  60 EIKKMIADIDKDGSGTIDFDEFLQMMTAKMSEKDS 94 
                 5678889999999**************99998886 PP

  == domain 3  score: 1.6 bits;  conditional E-value: 0.4
    Caleosin  11 aFfDrdkdGiiypldtyrgfralgfnv 37 
                   fD d+ G i + +  r  ++lg n+
  KOO23951.1 103 RLFDDDETGKISFKNLKRVAKELGENM 129
                 567888888888777777777777665 PP

  == domain 4  score: 0.0 bits;  conditional E-value: 1.2
    Caleosin   6 LqqHvaFfDrdkdGiiypldtyrgfralgfnvllsllaalvihlalsyptlpswlpdplfriyvknihkakhgSdsgaYdeeGrfvpqkfeeifskyak 104
                 Lq+ ++  Drd dG i                                                                                   
  KOO23951.1 134 LQEMIDEADRDGDGEINEE-------------------------------------------------------------------------------- 152
                 4444444455666555444................................................................................ PP

    Caleosin 105 ekkdaltlkevl 116
                          e+l
  KOO23951.1 153 ---------EFL 155
                 .........444 PP

>> DUF3008  Protein of unknwon function (DUF3008)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.2       4.6   2.7e+03      15      29 ..       6      20 ..       4      26 .. 0.66
   2 ?   -1.8   0.0         6   3.6e+03      20      43 ..      39      62 ..      37      71 .. 0.61
   3 ?   -1.7   0.8       5.6   3.4e+03      33      41 ..      85      93 ..      81      97 .. 0.78
   4 ?   13.1   0.2   0.00014     0.081      19      46 ..     111     138 ..     109     146 .. 0.87

  Alignments for each domain:
  == domain 1  score: -1.4 bits;  conditional E-value: 4.6
     DUF3008 15 aAKrGetkkseLkga 29
                a K G+t k eL + 
  KOO23951.1  6 AKKGGKTGKAELTEE 20
                445677788888765 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 6
     DUF3008 20 etkkseLkgaSksMyesMsekeLe 43
                  +++eLk a + +     ++e++
  KOO23951.1 39 TIDAKELKVAMRALGFEPKKEEIK 62
                556677777766654444455555 PP

  == domain 3  score: -1.7 bits;  conditional E-value: 5.6
     DUF3008 33 MyesMseke 41
                M   Msek+
  KOO23951.1 85 MTAKMSEKD 93
                888899997 PP

  == domain 4  score: 13.1 bits;  conditional E-value: 0.00014
     DUF3008  19 GetkkseLkgaSksMyesMsekeLeelA 46 
                 G+ + ++Lk  +k++ e M+++eL+e+ 
  KOO23951.1 111 GKISFKNLKRVAKELGENMTDEELQEMI 138
                 778889********************95 PP

>> EF-hand_11  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.6   0.0     0.048        29      21      85 ..      24      88 ..      13      97 .. 0.81
   2 ?    6.5   0.1     0.025        15      21      80 ..      97     156 ..      91     162 .. 0.91

  Alignments for each domain:
  == domain 1  score: 5.6 bits;  conditional E-value: 0.048
                HHHHHHHHH-TT-SSEE-HHHHHHHHHHHT--.--HHHHHHHHHTS-B-TTS-EEHHHHHHHHCS- CS
  EF-hand_11 21 aivqefenfdtlksntvsreefraictrrvqi.ltdeqfdrlwselpvnakgrlkyqdflsklsie 85
                 i + f+ fdt  s t+  +e++    r +      e++ ++ +++  +  g + +++fl  ++++
  KOO23951.1 24 EIREAFDLFDTDGSGTIDAKELKV-AMRALGFePKKEEIKKMIADIDKDGSGTIDFDEFLQMMTAK 88
                57788999*************985.55666551567999999999999999999999999877654 PP

  == domain 2  score: 6.5 bits;  conditional E-value: 0.025
                 HHHHHHHHH-TT-SSEE-HHHHHHHHHHHT----HHHHHHHHHTS-B-TTS-EEHHHHHH CS
  EF-hand_11  21 aivqefenfdtlksntvsreefraictrrvqiltdeqfdrlwselpvnakgrlkyqdfls 80 
                  i + f  fd   +  +s ++++ + +   + +tde+++ + +e   +  g ++ ++fl 
  KOO23951.1  97 EILKAFRLFDDDETGKISFKNLKRVAKELGENMTDEELQEMIDEADRDGDGEINEEEFLR 156
                 57889999*******************************************999999986 PP

>> FlgD  Flagellar hook capping protein - N-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.3   0.00054      0.33      19      43 ..      69      93 ..       5      95 .. 0.79
   2 ?   -0.7   0.0       3.1   1.9e+03      20      35 ..     143     158 ..     126     161 .. 0.77

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00054
        FlgD 19 sdksegeltqddFLkLLtaqLknQD 43
                ++  +g++++d+FL+++ta ++  D
  KOO23951.1 69 DKDGSGTIDFDEFLQMMTAKMSEKD 93
                5677899**************9877 PP

  == domain 2  score: -0.7 bits;  conditional E-value: 3.1
        FlgD  20 dksegeltqddFLkLL 35 
                 +   ge+++++FL+++
  KOO23951.1 143 RDGDGEINEEEFLRIM 158
                 5567889999999987 PP

>> DUF3349  Protein of unknown function (DUF3349)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.9   0.1    0.0087       5.2      33      90 ..      16      72 ..      14      77 .. 0.84
   2 ?    3.5   0.1      0.21   1.2e+02      36      79 ..      58      98 ..      57     106 .. 0.81
   3 ?    4.2   0.3      0.13        76      30      61 ..     125     153 ..      77     162 .. 0.77

  Alignments for each domain:
  == domain 1  score: 7.9 bits;  conditional E-value: 0.0087
                T--HHHHHHHHHHHHHH--.SSS.BSHHHCHHHHHHHCTS---HHHHHHHHHHHHTTT CS
     DUF3349 33 rLsdeevkevaeelvaeaaeadeavdeedieelitkvteeepseedvarVaarLaagg 90
                +L++e+ +e+ e++   +++ ++++d+++++++++++   ep++e+++++ a + + g
  KOO23951.1 16 ELTEEQKQEIREAFDLFDTDGSGTIDAKELKVAMRAL-GFEPKKEEIKKMIADIDKDG 72
                7999999999888877777899*********998765.678********999998877 PP

  == domain 2  score: 3.5 bits;  conditional E-value: 0.21
                HHHHHHHHHHHHHH--.SSS.BSHHHCHHHHHHHCTS---HHHH CS
     DUF3349 36 deevkevaeelvaeaaeadeavdeedieelitkvteeepseedv 79
                +ee+k++++++ +++   ++++d ++  +++t+ ++e+ s e++
  KOO23951.1 58 KEEIKKMIADIDKDG---SGTIDFDEFLQMMTAKMSEKDSREEI 98
                589999999999988...68899999888888888888888777 PP

  == domain 3  score: 4.2 bits;  conditional E-value: 0.13
                 HCTT--HHHHHHHHHHHHHH--.SSS.BSHHH CS
     DUF3349  30 LrrrLsdeevkevaeelvaeaaeadeavdeed 61 
                 L ++++dee++e+++e  +++   d++++ee+
  KOO23951.1 125 LGENMTDEELQEMIDEADRDG---DGEINEEE 153
                 456677788887777777776...45555555 PP

>> LETM1  LETM1-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   1.0   0.00038      0.23     115     173 ..      60     120 ..      18     126 .. 0.73

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00038
       LETM1 115 tleeslkkkkkekkekaeelkeflkkvrsggepeevsneeilkvaklFkde....ltLdnlsr 173
                 ++++++  + +++ + + +++efl+ +  +  +e+ s+eeilk  +lF+d+    ++++nl+r
  KOO23951.1  60 EIKKMIA-DIDKDGSGTIDFDEFLQMMTAKM-SEKDSREEILKAFRLFDDDetgkISFKNLKR 120
                 3434422.22333447889*****9999986.5689*************99765566666665 PP

>> Glyco_transf_92  Glycosyltransferase family 92
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.3   0.00042      0.25     108     167 ..      75     139 ..      73     145 .. 0.78

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00042
  Glyco_transf_92 108 fvDlDEflvp.......tksnetieellrevanekvgslsfrnre.vlkdesipakefsneslkqvik 167
                       +D+DEfl +       ++s e i+   r ++++++g +sf+n   v+k+   +   + +e+l+++i+
       KOO23951.1  75 TIDFDEFLQMmtakmseKDSREEILKAFRLFDDDETGKISFKNLKrVAKELGEN---MTDEELQEMID 139
                      69******999*****99*************************88333333322...33456666655 PP

>> DUF21  Cyclin M transmembrane N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.0       2.7   1.6e+03     154     169 ..      56      71 ..      50      80 .. 0.76
   2 ?    9.8   0.2     0.001       0.6     147     176 .]     122     153 ..      99     153 .. 0.84

  Alignments for each domain:
  == domain 1  score: -1.4 bits;  conditional E-value: 2.7
       DUF21 154 vseeelkklveeseee 169
                  ++ee+kk+++  ++ 
  KOO23951.1  56 PKKEEIKKMIADIDKD 71 
                 5789****99876665 PP

  == domain 2  score: 9.8 bits;  conditional E-value: 0.001
       DUF21 147 esesepavseeelkklveeseee..gvieeee 176
                  +e ++ +++eel+++++e+++   g+i+eee
  KOO23951.1 122 AKELGENMTDEELQEMIDEADRDgdGEINEEE 153
                 5788999***************9667777776 PP

>> SHOCT  Short C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.4       4.2   2.5e+03      21      27 ..      19      25 ..      16      28 .. 0.67
   2 ?   -2.5   0.0       8.3     5e+03      13      23 ..      74      84 ..      73      85 .. 0.69
   3 ?   -1.2   0.2       3.1   1.8e+03      16      23 ..     130     137 ..     129     140 .. 0.77
   4 ?   10.8   0.4   0.00052      0.31      12      26 ..     146     160 ..     146     160 .. 0.86

  Alignments for each domain:
  == domain 1  score: -1.6 bits;  conditional E-value: 4.2
       SHOCT 21 eakKakL 27
                e++K+++
  KOO23951.1 19 EEQKQEI 25
                5666665 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 8.3
       SHOCT 13 GeIteEEFeak 23
                G I+ +EF ++
  KOO23951.1 74 GTIDFDEFLQM 84
                55665899886 PP

  == domain 3  score: -1.2 bits;  conditional E-value: 3.1
       SHOCT  16 teEEFeak 23 
                 t+EE +++
  KOO23951.1 130 TDEELQEM 137
                 89998876 PP

  == domain 4  score: 10.8 bits;  conditional E-value: 0.00052
       SHOCT  12 rGeIteEEFeakKak 26 
                 +GeI+eEEF +  +k
  KOO23951.1 146 DGEINEEEFLRIMKK 160
                 5********998775 PP

>> MgtE_N  MgtE intracellular N domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.4   0.1         3   1.8e+03      72      95 ..      16      27 ..      14      35 .. 0.53
   2 ?   12.1   1.2   0.00038      0.23       7      64 ..      87     144 ..      82     156 .. 0.90

  Alignments for each domain:
  == domain 1  score: -0.4 bits;  conditional E-value: 3
                CCHHHHHHHHHHCS-HHHHHHHHH CS
      MgtE_N 72 elpeekveellsaldeeereeiee 95
                el e            e+++ei+e
  KOO23951.1 16 ELTE------------EQKQEIRE 27
                3444............44444443 PP

  == domain 2  score: 12.1 bits;  conditional E-value: 0.00038
                 HHCHCCS-HHHHHHHHHHS-HHHHHHHHCTS-CCCCCHHHHCS-HHHHHHHHCCS-HH CS
      MgtE_N   7 aelleelpeeeraallrllpkeeaaevleeldedlqeeliealsdeelaelleeldsD 64 
                 a++ e+ + ee ++ +rl +++e +++  +   ++++el e+++deel+e+++e d D
  KOO23951.1  87 AKMSEKDSREEILKAFRLFDDDETGKISFKNLKRVAKELGENMTDEELQEMIDEADRD 144
                 566677788999***************9999999*******************98877 PP

>> Gp-FAR-1  Nematode fatty acid retinoid binding protein (Gp-FAR-1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.8   0.1      0.45   2.7e+02     117     130 ..      16      29 ..      12      34 .. 0.78
   2 ?    0.3   0.1       1.3   7.9e+02      23      49 ..      58      88 ..      43     101 .. 0.70
   3 ?    9.0   0.3    0.0028       1.7      13      50 ..     124     162 ..     114     163 .. 0.84

  Alignments for each domain:
  == domain 1  score: 1.8 bits;  conditional E-value: 0.45
    Gp-FAR-1 117 slseeakaelekaF 130
                 +l+ee+k+e+++aF
  KOO23951.1  16 ELTEEQKQEIREAF 29 
                 57788888888887 PP

  == domain 2  score: 0.3 bits;  conditional E-value: 1.3
    Gp-FAR-1 23 kaqlkevvknykg....yknedellaalKkk 49
                k+++k+++ + ++        de+l+ + +k
  KOO23951.1 58 KEEIKKMIADIDKdgsgTIDFDEFLQMMTAK 88
                6677777777444355566677777777665 PP

  == domain 3  score: 9.0 bits;  conditional E-value: 0.0028
    Gp-FAR-1  13 ealknltdeekaqlkevvkn.ykgyknedellaalKkks 50 
                 e+ +n+tdee +++++ +    +g  ne+e+l ++Kk s
  KOO23951.1 124 ELGENMTDEELQEMIDEADRdGDGEINEEEFLRIMKKTS 162
                 566899***988888777665999************975 PP

>> EF-hand_10  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.4   0.0      0.99   5.9e+02      30      47 ..      32      49 ..      25      52 .. 0.75
   2 ?   -0.6   0.0         2   1.2e+03       9      21 ..      80      92 ..      75      96 .. 0.80
   3 ?    8.3   1.6    0.0035       2.1       1      44 [.     112     155 ..     112     160 .. 0.94

  Alignments for each domain:
  == domain 1  score: 0.4 bits;  conditional E-value: 0.99
  EF-hand_10 30 cDkSksgrLegeEieeFy 47
                 D+  sg+++ +E++  +
  KOO23951.1 32 FDTDGSGTIDAKELKVAM 49
                589999999999998755 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 2
  EF-hand_10  9 rlLreiNievdde 21
                ++L+++   ++++
  KOO23951.1 80 EFLQMMTAKMSEK 92
                7999998888875 PP

  == domain 3  score: 8.3 bits;  conditional E-value: 0.0035
  EF-hand_10   1 kmsfkEvkrlLreiNievddeYAekLFkkcDkSksgrLegeEie 44 
                 k+sfk +kr  +e+  ++ de  +++  ++D+  +g +++eE+ 
  KOO23951.1 112 KISFKNLKRVAKELGENMTDEELQEMIDEADRDGDGEINEEEFL 155
                 89***************************************985 PP

>> SRI  SRI (Set2 Rpb1 interacting) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.2   0.1       1.9   1.1e+03      55      70 ..      12      27 ..       5      30 .. 0.72
   2 ?    0.5   0.2       1.2   7.1e+02      29      50 ..      75      96 ..      42     114 .. 0.62
   3 ?    9.1   0.1    0.0024       1.4      30      53 ..     116     139 ..      97     160 .. 0.79

  Alignments for each domain:
  == domain 1  score: -0.2 bits;  conditional E-value: 1.9
         SRI 55 dppkelseekkkkike 70
                   +el+ee+k+ i+e
  KOO23951.1 12 TGKAELTEEQKQEIRE 27
                3456799**9999976 PP

  == domain 2  score: 0.5 bits;  conditional E-value: 1.2
         SRI 29 kedfKklakeltkklvekElkk 50
                + df ++ + +t k+ ek+ ++
  KOO23951.1 75 TIDFDEFLQMMTAKMSEKDSRE 96
                4455555566666666666555 PP

  == domain 3  score: 9.1 bits;  conditional E-value: 0.0024
         SRI  30 edfKklakeltkklvekElkkdks 53 
                  ++K++akel + +++ El++  +
  KOO23951.1 116 KNLKRVAKELGENMTDEELQEMID 139
                 689*****************9663 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (164 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1563  (0.0871772); expected 358.6 (0.02)
Passed bias filter:                      894  (0.0498633); expected 358.6 (0.02)
Passed Vit filter:                       101  (0.00563333); expected 17.9 (0.001)
Passed Fwd filter:                        31  (0.00172904); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              30  [number of targets reported over threshold]
# CPU time: 0.57u 0.28s 00:00:00.85 Elapsed: 00:00:00.44
# Mc/sec: 1118.13
//
Query:       KOO23952.1  [L=456]
Description: hypothetical protein Ctob_004806 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (456 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       364  (0.0203023); expected 358.6 (0.02)
Passed bias filter:                      307  (0.0171231); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.50u 0.24s 00:00:00.74 Elapsed: 00:00:00.42
# Mc/sec: 3271.58
//
Query:       KOO23953.1  [L=121]
Description: ribosomal protein l31 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    8.4e-41  138.1   0.3    1.1e-40  137.7   0.3    1.2  1  Ribosomal_L31e  Ribosomal protein L31e
  ------ inclusion threshold ------
      0.088   12.7   0.2        8.5    6.3   0.0    2.2  2  Vsr             DNA mismatch endonuclease Vsr


Domain annotation for each model (and alignments):
>> Ribosomal_L31e  Ribosomal protein L31e
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  137.7   0.3   1.3e-44   1.1e-40       1      81 [.      14      94 ..      14      95 .. 0.98

  Alignments for each domain:
  == domain 1  score: 137.7 bits;  conditional E-value: 1.3e-44
  Ribosomal_L31e  1 evvtreytInihkrihgvgfkkraprAlkeikkfamkemgtpdvridtrLnkavwakgirnvpyrirvrlsrkrnedEdsk 81
                    evvtreyt+++ k +hg+gfkkraprA+keik+fa+k mgt+dvr+dt+Lnk++w++gi+ vp r+rvrl+rkrn+dE+++
      KOO23953.1 14 EVVTREYTVHLRKLLHGIGFKKRAPRAVKEIKAFAKKMMGTEDVRVDTKLNKYLWSQGIKGVPGRVRVRLARKRNDDEEAA 94
                    79****************************************************************************986 PP

>> Vsr  DNA mismatch endonuclease Vsr
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.7   0.1    0.0029        26      23      40 ..      20      37 ..       2      45 .. 0.73
   2 ?    6.3   0.0   0.00095       8.5      14      37 ..      50      73 ..      40      85 .. 0.83

  Alignments for each domain:
  == domain 1  score: 4.7 bits;  conditional E-value: 0.0029
                HHHHHHHHHHHTT--EEE CS
         Vsr 23 pElrlaklltglGlryRk 40
                  + l+kll g G++ R 
  KOO23953.1 20 YTVHLRKLLHGIGFKKRA 37
                45789*********9886 PP

  == domain 2  score: 6.3 bits;  conditional E-value: 0.00095
                HTXXSSSXHHHHHHHHHHHHTT-- CS
         Vsr 14 akikskdtkpElrlaklltglGlr 37
                + + ++d +++ +l k l+++G++
  KOO23953.1 50 KMMGTEDVRVDTKLNKYLWSQGIK 73
                556789999*************85 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (121 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       581  (0.0324056); expected 358.6 (0.02)
Passed bias filter:                      406  (0.0226449); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.38u 0.27s 00:00:00.65 Elapsed: 00:00:00.42
# Mc/sec: 859.89
//
Query:       KOO23954.1  [L=134]
Description: hypothetical protein Ctob_004804 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (134 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       185  (0.0103185); expected 358.6 (0.02)
Passed bias filter:                      171  (0.00953762); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.26s 00:00:00.62 Elapsed: 00:00:00.41
# Mc/sec: 990.89
//
Query:       KOO23955.1  [L=487]
Description: malate:quinone oxidoreductase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
   1.2e-128  429.7   0.0   1.6e-128  429.4   0.0    1.1  1  Mqo           Malate:quinone oxidoreductase (Mqo)
    1.8e-10   41.1   0.0    1.4e-09   38.2   0.1    2.2  2  EF-hand_7     EF-hand domain pair
    1.1e-09   37.3   0.1    0.00072   18.9   0.1    2.6  2  EF-hand_5     EF hand
    2.5e-09   36.8   0.2      4e-05   23.4   0.0    2.4  2  EF-hand_8     EF-hand domain pair
    2.8e-09   36.2   0.2     0.0024   17.6   0.1    2.7  2  EF-hand_6     EF-hand domain
    2.5e-08   32.9   0.6     0.0024   17.3   0.0    2.9  3  EF-hand_1     EF hand
    7.3e-05   22.5   0.0    0.00036   20.2   0.0    2.0  1  DAO           FAD dependent oxidoreductase
  ------ inclusion threshold ------
      0.096   13.0   0.0        0.2   12.0   0.0    1.4  1  SPARC_Ca_bdg  Secreted protein acidic and rich in cysteine Ca


Domain annotation for each model (and alignments):
>> Mqo  Malate:quinone oxidoreductase (Mqo)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  429.4   0.0  7.1e-132  1.6e-128      86     487 ..       3     402 ..       1     403 [. 0.97

  Alignments for each domain:
  == domain 1  score: 429.4 bits;  conditional E-value: 7.1e-132
         Mqo  86 srqfwaylvekgllkdpkefinkvpHlsfvageenveflkkRyealkksplfegmeysedkeelkewlPlvmegRdak..ekvaatrieeGtdvnfgal 182
                 s  fw++lvek +l d  +fi++ pH+ fv+gee+ e+lk+R e+l+k p+f+  eysed +++++w  l+ +gR ++  e +aa+r   Gt+vn+g l
  KOO23955.1   3 SLAFWSFLVEKSILPD-ATFIQPAPHILFVHGEEKREWLKRRVEKLSKLPAFAATEYSEDYDTIQKWSGLLCNGRPRSggEVIAASRHPDGTEVNYGLL 100
                 889***********87.79******************************************************987755599***************** PP

         Mqo 183 trqllkalekkkgvelklkhevkdlkreedgkWkvkvkdl.ktgekkkvkakfvfiGaGGgalklLqksgipeakgyggfPvsGqflvcknpevveqhe 280
                 tr+l+++  +  g +++l ++v+ l++++d++W v v++   t++++ v+a+fvf G GGg+l+lLq +gipe++gygg+PvsG+flvc++ +vveq  
  KOO23955.1 101 TRHLVQSFGE-LGGDVQLLSTVTALRQQADKRWLVAVHKAdLTDSNQVVRARFVFAGGGGGSLSLLQMAGIPEVQGYGGMPVSGKFLVCQKLDVVEQNL 198
                 ********55.999***********************998467888999************************************************** PP

         Mqo 281 akvYgkaavgaPPmsvpHlDtRvidgkksllfGPfagfstkflk.egslldllksvklsnllpllavglknldLvkYlieqvlkskedrlealreflpe 378
                  kvYg aav+aPPmsvpH+D R + gk +++fGPfagfs+ + k +g  ld l++++ +n+lp+ +++++nl+LvkYli++++ sk ++lealref+p 
  KOO23955.1 199 NKVYGPAAVSAPPMSVPHIDFRSLYGKDVIFFGPFAGFSPMLFKvSGTPLDWLATINWHNVLPMAKMAMSNLPLVKYLIKEIFASKGAQLEALREFYPA 297
                 ****************************************988747999************************************************** PP

         Mqo 379 akkedWelvvaGqRvqvikkdeekggvlefGtevvasadgslaalLGasPGAstavsimlevlekcfkeklkseewkeklkelipsygkkleedaelle 477
                 ak edW++v aGqR+q+++     +g+l+fGtev++s+dg+l +lLGasPGAs++ +i+lev++k  k   ++ +w+  l++ ip yg+++++++ l++
  KOO23955.1 298 AKPEDWTMVWAGQRIQIVNP----KGELQFGTEVLSSKDGTLVGLLGASPGASVSPQIALEVINKFDKGANSAFQWHLALSKWIPCYGRDVNKEPGLYD 392
                 ******************99....79***************************************999999999************************* PP

         Mqo 478 evrketakvL 487
                 +++++++kvL
  KOO23955.1 393 QIMSKARKVL 402
                 ****999987 PP

>> EF-hand_7  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.3   0.0      0.67   1.5e+03      36      56 ..     342     362 ..     288     367 .. 0.82
   2 !   38.2   0.1   6.4e-13   1.4e-09       6      67 ..     419     472 ..     414     475 .. 0.88

  Alignments for each domain:
  == domain 1  score: -0.3 bits;  conditional E-value: 0.67
   EF-hand_7  36 gegsklsdeelellfkefDtd 56 
                 ++g ++s++   +++++fD+ 
  KOO23955.1 342 SPGASVSPQIALEVINKFDKG 362
                 889999999999******986 PP

  == domain 2  score: 38.2 bits;  conditional E-value: 6.4e-13
   EF-hand_7   6 eaFkelDtdgdgyldkeellrllrkifqgagegsklsdeelellfkefDtdkdGvisfdEFl 67 
                   F+++D d+dg l++ e+ ++l       g g  + +e++++l++ +Dtdk+G+is++EF 
  KOO23955.1 419 HLFDLIDLDHDGTLTMKEVSKYLL------GQG--MAKEQIQALVNALDTDKSGTISRQEFD 472
                 57****************998887......555..55789*********************5 PP

>> EF-hand_5  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.0   3.3e-06    0.0073       4      21 ..     420     437 ..     417     442 .. 0.87
   2 !   18.9   0.1   3.2e-07   0.00072       6      22 ..     456     472 ..     451     476 .. 0.87

  Alignments for each domain:
  == domain 1  score: 15.8 bits;  conditional E-value: 3.3e-06
                 HHHHH-SS-SSCE-HHHH CS
   EF-hand_5   4 tFqaiDlNgDGkIskeEL 21 
                 +F+ iDl++DG++++ E 
  KOO23955.1 420 LFDLIDLDHDGTLTMKEV 437
                 8**************995 PP

  == domain 2  score: 18.9 bits;  conditional E-value: 3.2e-07
                 HHH-SS-SSCE-HHHHH CS
   EF-hand_5   6 qaiDlNgDGkIskeELk 22 
                 +a+D++++G+Is++E+ 
  KOO23955.1 456 NALDTDKSGTISRQEFD 472
                 79*************96 PP

>> EF-hand_8  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.6   0.2   8.7e-05       0.2      30      51 ..     419     440 ..     416     442 .. 0.88
   2 !   23.4   0.0   1.8e-08     4e-05      17      48 ..     442     471 ..     437     473 .. 0.91

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 8.7e-05
   EF-hand_8  30 ilfrefDtdgdGkisfeEFcvl 51 
                 +lf+++D+d+dG+++ +E   +
  KOO23955.1 419 HLFDLIDLDHDGTLTMKEVSKY 440
                 8**************9998766 PP

  == domain 2  score: 23.4 bits;  conditional E-value: 1.8e-08
   EF-hand_8  17 lglkkglseeevdilfrefDtdgdGkisfeEF 48 
                 lg+   + +e++++l++++Dtd++G+is  EF
  KOO23955.1 442 LGQG--MAKEQIQALVNALDTDKSGTISRQEF 471
                 4655..99***********************9 PP

>> EF-hand_6  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.6   0.1   1.1e-06    0.0024       4      26 ..     419     441 ..     418     444 .. 0.89
   2 !   15.7   0.0   4.7e-06     0.011       2      26 ..     451     475 ..     450     482 .. 0.86

  Alignments for each domain:
  == domain 1  score: 17.6 bits;  conditional E-value: 1.1e-06
   EF-hand_6   4 eaFklfDkdgdGkidaeElrkal 26 
                 ++F+l+D d+dG+++++E+ k l
  KOO23955.1 419 HLFDLIDLDHDGTLTMKEVSKYL 441
                 68****************97765 PP

  == domain 2  score: 15.7 bits;  conditional E-value: 4.7e-06
   EF-hand_6   2 lreaFklfDkdgdGkidaeElrkal 26 
                 ++++ +++D+d++G+i+++E+   +
  KOO23955.1 451 IQALVNALDTDKSGTISRQEFDEGF 475
                 678889***************7655 PP

>> EF-hand_1  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.0       3.5   7.9e+03       4      11 ..     354     361 ..     353     361 .. 0.86
   2 !   13.1   0.0   2.4e-05     0.054       5      25 ..     420     440 ..     418     443 .. 0.89
   3 !   17.3   0.0   1.1e-06    0.0024       3      26 ..     452     475 ..     450     478 .. 0.83

  Alignments for each domain:
  == domain 1  score: -3.1 bits;  conditional E-value: 3.5
                 HHHHHHTT CS
   EF-hand_1   4 eiFrefDk 11 
                 e++++fDk
  KOO23955.1 354 EVINKFDK 361
                 7899***7 PP

  == domain 2  score: 13.1 bits;  conditional E-value: 2.4e-05
                 HHHHHTTTSSSEEEHHHHHHH CS
   EF-hand_1   5 iFrefDkDgdGkIdfeEfkel 25 
                 +F+++D D+dG+++ +E  ++
  KOO23955.1 420 LFDLIDLDHDGTLTMKEVSKY 440
                 69**************98765 PP

  == domain 3  score: 17.3 bits;  conditional E-value: 1.1e-06
                 HHHHHHHTTTSSSEEEHHHHHHHH CS
   EF-hand_1   3 keiFrefDkDgdGkIdfeEfkell 26 
                 + + + +D+D++G+I+++Ef e +
  KOO23955.1 452 QALVNALDTDKSGTISRQEFDEGF 475
                 6667889*************8876 PP

>> DAO  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.2   0.0   1.6e-07   0.00036     119     237 ..      63     199 ..      23     358 .. 0.57

  Alignments for each domain:
  == domain 1  score: 20.2 bits;  conditional E-value: 1.6e-07
                 HHHHHHSTT....ST....TTSEEEEETTEEEEEHHHHHHHHHHHHHHTT-EEEESECEEEEEEEETCEEEEE....EECT.EEEEEEEE.EEE--GGG CS
         DAO 119 eevrelepa....lp....gllgalfypdtgqvdpakltaalaraaealGveilegtevtgleeedgkvwgve....rttp.gendaada.vVnaaGaw 203
                 + +++++       p    ++ +a   pd+  v++  lt+ l + + +lG+++ + ++vt+l+++ +k w v     + t+ ++   ++a  V a G +
  KOO23955.1  63 DTIQKWSGLlcngRPrsggEVIAASRHPDGTEVNYGLLTRHLVQSFGELGGDVQLLSTVTALRQQADKRWLVAvhkaDLTDsNQ--VVRArFVFAGGGG 159
                 44445554443321145667778999************************************8888788999887664444333..4688899999999 PP

                 HH.HH.HTT..CTTT.SEEEEEEEEEEEEEECCT.HSTGS CS
         DAO 204 sd.ll.gll..keld.lpispvrgqvlvlkplse.klvsp 237
                  +  l +++  +e++    +pv g  lv ++l+  +++ +
  KOO23955.1 160 GSlSLlQMAgiPEVQgYGGMPVSGKFLVCQKLDVvEQNLN 199
                 8854457776555533444788888888866655333333 PP

>> SPARC_Ca_bdg  Secreted protein acidic and rich in cysteine Ca binding region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   8.8e-05       0.2      45     110 ..     406     471 ..     368     473 .. 0.79

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 8.8e-05
  SPARC_Ca_bdg  45 eeknlkeckepvawkFsklDtnsdkvlsksELaplraplvklehCikpflescDadkdkkislkEw 110
                   ++  +++ + + a  F+ +D ++d++l+ +E+++  +      + i++++++ D+dk ++is++E+
    KOO23955.1 406 NTAGYRSSRVNTAHLFDLIDLDHDGTLTMKEVSKYLLGQGMAKEQIQALVNALDTDKSGTISRQEF 471
                   555566666677888*****************9987777777788********************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (487 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       390  (0.0217525); expected 358.6 (0.02)
Passed bias filter:                      386  (0.0215294); expected 358.6 (0.02)
Passed Vit filter:                        53  (0.0029561); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.55u 0.27s 00:00:00.82 Elapsed: 00:00:00.43
# Mc/sec: 3420.80
//
Query:       KOO23956.1  [L=527]
Description: glutathione synthetase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
   3.8e-115  384.7   0.0   4.4e-115  384.4   0.0    1.0  1  GSH_synth_ATP  Eukaryotic glutathione synthase, ATP binding d
    1.9e-29  102.1   0.0    4.5e-29  100.9   0.0    1.6  1  GSH_synthase   Eukaryotic glutathione synthase


Domain annotation for each model (and alignments):
>> GSH_synth_ATP  Eukaryotic glutathione synthase, ATP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  384.4   0.0  4.9e-119  4.4e-115       5     375 .]      30     525 ..      26     525 .. 0.94

  Alignments for each domain:
  == domain 1  score: 384.4 bits;  conditional E-value: 4.9e-119
                    xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  GSH_synth_ATP   5 eelveeakdwalahGllvrkaekkekkessesathapvtLlPspfprklfeeAvevqkayneLyakvasdeefLeevleevikvDeFtakLweiye 100
                    e+l e++ ++a+ hG l+          ++  + hap++LlP pfp++lf++A++++k +n L+++ a+d+++L +v+++++++DeFt++L+ei e
     KOO23956.1  30 EALREHTLHFAACHGALLG---------AQGPFKHAPCSLLPYPFPASLFTQAISLSKPFNMLVDQCARDTNWLFRVVRTTVEHDEFTRRLLEIAE 116
                    5677888888888888882.........235689************************************************************** PP

                    xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.......................xxxxxx...... RF
  GSH_synth_ATP 101 kvkkeglvqklslglfRsDYllheeeekeelslkqvEfNtisssfgglsskvselhryllk.......................kekkkk...... 167
                    +v++eg+vq+l+l+++RsDY++++ + ++++++ qvE+Ntis+sf +ls+k++elhr+ ++                       +    +      
     KOO23956.1 117 RVTAEGVVQPLQLSINRSDYMIEQPSANATPRILQVELNTISVSFPSLSAKMCELHRHTVArlavdlaltdtahaevvrgrpglS----Aamnats 208
                    **********************************************************888799999988777766666665551....0444444 PP

                    xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.................................................................. RF
  GSH_synth_ATP 168 sllksnelpenealeelaeglakAhkaysk.................................................................. 197
                     ++ ++ lp+n +++e+a++la+Ah++y +                                                                  
     KOO23956.1 209 AAEVEAALPSNASVREVAAALAQAHDEYASlvsaagtpapclvvlmivattesnvidqrgleeqlwrehrvpmlrmplaqvhatgvlsadsrrltv 304
                    5555566*********************888889999*********************************************************** PP

                    ............................................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xx RF
  GSH_synth_ATP 198 ............................................PsiatqLagtKkvqqvLakpgvLerfleekeeveklretFaglysLdkd.es 248
                                                                Ps++ qLagtKkvqqvLa+pg +erfl  +++++ lr++Fa+ly L++d   
     KOO23956.1 305 aaplgglvevsvayfragyapgdytgeadwaaretlerslcvkcPSVHQQLAGTKKVQQVLAQPGEVERFL-PAADAALLRTCFAKLYGLEADgG- 398
                    **********************************************************************5.5689***************9955. PP

                    x.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  GSH_synth_ATP 249 e.gkeavklaleepekyVLKPqrEGGGnNiYgedipefLkklkeeersaYILMelieppavknvlvraegevekeevisELGiygtilfkkeevlv 343
                    +  +++v+ a+++pe +VLKPqrEGGGnN+Y ++++++L++++ eers+YILMe+i+pp+++  l+r eg +  + + +ELG+yg+il+++++vl 
     KOO23956.1 399 AaVDAIVQAAIAQPEGFVLKPQREGGGNNFYFAELAQALRTMSPEERSSYILMERIRPPSHQMPLMR-EGILDGGAATCELGVYGVILSDGKRVLA 493
                    55999**************************************************************.999************************* PP

                    xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  GSH_synth_ATP 344 neeaGyllRtKasssdegGVaaGfgvlDsplL 375
                    n++aG+llR K + +degGV aGf+vl+sp+L
     KOO23956.1 494 NRSAGHLLRVKLEGVDEGGVCAGFAVLSSPVL 525
                    ******************************98 PP

>> GSH_synthase  Eukaryotic glutathione synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  100.9   0.0     5e-33   4.5e-29       2     103 .]     251     356 ..     250     356 .. 0.97

  Alignments for each domain:
  == domain 1  score: 100.9 bits;  conditional E-value: 5e-33
                   EEEEEE-TT-TTHHHHHHHHHHHHHCC.-EEEEE-HHHHHHHEEE...TT-EEEETTT....EEEEEEEECS-SSGGG--SHHHHHHHHHHHHSSSE CS
  GSH_synthase   2 ivlfvvqenernvfDqrlleyellekh.ikvirvtleelkeetkleekekkkllldkk....kevsvvYfRagYapkdypseeeweaRlllErssai 93 
                   +vl++v   e+nv+Dqr le++l+++h ++++r+ l++++++  l + ++++l++  +    +evsv+YfRagYap dy+ e++w+aR++lErs ++
    KOO23956.1 251 VVLMIVATTESNVIDQRGLEEQLWREHrVPMLRMPLAQVHATGVL-SADSRRLTVAAPlgglVEVSVAYFRAGYAPGDYTGEADWAARETLERSLCV 346
                   79*****************************************88.668999**99999************************************** PP

                   EET-HHHHHH CS
  GSH_synthase  94 kcPsiayqLa 103
                   kcPs+++qLa
    KOO23956.1 347 KCPSVHQQLA 356
                   ********96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (527 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       566  (0.031569); expected 358.6 (0.02)
Passed bias filter:                      450  (0.025099); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.53u 0.25s 00:00:00.78 Elapsed: 00:00:00.40
# Mc/sec: 3963.19
//
Query:       KOO23957.1  [L=633]
Description: hypothetical protein Ctob_004801 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.9e-19   70.3   0.0    8.3e-19   68.2   0.0    1.9  1  PP2C       Protein phosphatase 2C
    4.5e-09   36.3   0.3    4.5e-09   36.3   0.3    2.5  2  PP2C_2     Protein phosphatase 2C
     0.0015   18.7   2.0     0.0035   17.6   2.0    1.5  1  DUF4575    Domain of unknown function (DUF4575)
  ------ inclusion threshold ------
       0.03   13.2   5.6      0.049   12.5   5.6    1.2  1  Spc7       Spc7 kinetochore protein
      0.034   13.0  12.6      0.055   12.3  12.6    1.2  1  Mitofilin  Mitochondrial inner membrane protein


Domain annotation for each model (and alignments):
>> PP2C  Protein phosphatase 2C
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   68.2   0.0   2.3e-22   8.3e-19      95     254 ..     330     564 ..     246     566 .. 0.80

  Alignments for each domain:
  == domain 1  score: 68.2 bits;  conditional E-value: 2.3e-22
                 CHCCT-EEEEEE.EEEETTEEEEEEESS-EEEEEETTEEE........EECS---STTSHHHHHHHHHTT--EEECCEEETTT................ CS
        PP2C  95 tepsksGstavv.alirgtklyvAnvGDSravLcrkgnak........keltedHkpsdedEreRIeeaggsvsngegrvngs................ 168
                  e  + G+ta++ al+ g +l +A+vGDS a+L++  +           el+e H +++ +E  R++e+g++ +   + v ++                
  KOO23957.1 330 LESVDGGTTATIiALLDGATLVMAQVGDSSALLGGTIGGDegdaevafEELMEEHSATNVKEYVRVKESGPRGQ-ALNFVYDVhdliekgkldqcaifk 427
                 377899****8626778888*************987776667999**************************999.46666666899999********** PP

                 ...................................................BSBSB-EE-GGGTCCCCCCSTSB---EEEEEEE-TT.EE....EEEEE CS
        PP2C 169 ...................................................LavsRalGDlelkpketeeqlvsaePdvtsvkltee.de....fliLa 211
                                                                    La++R+lGD+++       + v+ +P+v sv+l e+  e     liL 
  KOO23957.1 428 ksngqfemdvrskrlaevhgtpaknargdlpailltpendetpfesmepqsLAMTRSLGDFYMHT-----FGVTWKPEVISVDLAEQcGEldhlTLILC 521
                 ****************************************************************8.....79********999987655523337**** PP

                 -HHHHTTSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHCCH CS
        PP2C 212 cdGlwdvlsdqeavdlvrdelekkkspeevaeelvdeaiargs 254
                 +dG+wd+ +++++ + + +  + +++  e a++  +  i +g+
  KOO23957.1 522 SDGIWDLWEYEQVFQAIVSAPKNGQQSFETARKFFEASIVKGT 564
                 ***************9999999888888888888887777776 PP

>> PP2C_2  Protein phosphatase 2C
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   1.5      0.56     2e+03      77      77 ..      84      84 ..      25     147 .. 0.51
   2 !   36.3   0.3   1.3e-12   4.5e-09      10     123 ..     232     364 ..     228     547 .. 0.79

  Alignments for each domain:
  == domain 1  score: -1.8 bits;  conditional E-value: 0.56
      PP2C_2 77 l 77
                +
  KOO23957.1 84 R 84
                1 PP

  == domain 2  score: 36.3 bits;  conditional E-value: 1.3e-12
      PP2C_2  10 lpcqDalavwtdsggsll.aVaDGaGSakrSerGariaveavvealaelleseeeeeeallraleaailadv..................lkeeaeaqd 89 
                 +++qD +++++ ++  ++  V DG+GS ++ + +a +a++++ e+++ ++++ ++e e++++ + + +++++                    +e e + 
  KOO23957.1 232 AKNQDTYFSFQVDAHNCCwGVLDGHGSDNG-RLAADVAADVIKEYVHANFDRLRTEPETVFTTAFEMAHEKCrqallavdtenyrlvgnvPVDEYEPGM 329
                 68******999999999955*******876.*******************9988884444444444444444444588888889999998667777777 PP

      PP2C_2  90 aelkdyatTllaav.vtpdeivalqiGDGaivvrd 123
                  e  d +tT  +++ +++ ++v++q+GD+ +++ +
  KOO23957.1 330 LESVDGGTTATIIAlLDGATLVMAQVGDSSALLGG 364
                 78888888877666488999*********998765 PP

>> DUF4575  Domain of unknown function (DUF4575)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.6   2.0   9.7e-07    0.0035      17      92 ..     187     267 ..     172     274 .. 0.80

  Alignments for each domain:
  == domain 1  score: 17.6 bits;  conditional E-value: 9.7e-07
     DUF4575  17 ppppamgvprdrggrgagsqstprggcllpprlgsqqpageeglvlspr.....lagdaspccdgspksqgvkrgwlsvpt 92 
                 p   a   p  + g g g q +prg cl p  +g  +p g + l    +     +  da  cc g    +g   g l+   
  KOO23957.1 187 PALAARPSPAAKAGSGPGKQPSPRGPCLCPFEFGYTHPGGSKPLDAKNQdtyfsFQVDAHNCCWGVLDGHGSDNGRLAADV 267
                 444455678899****************************999976654222226789*******9999999999887665 PP

>> Spc7  Spc7 kinetochore protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   5.6   1.4e-05     0.049     147     258 ..      23     138 ..      11     145 .. 0.78

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 1.4e-05
        Spc7 147 nlegleedk..elLekqeeeldellpeleeekaeleeelek.lqeaaeelesidkeeLeelreelaelk.aeieekkkelaelqeqleeleekieelke 241
                 +l++le+d   + L++  ++  +  ++l++++++ e+ele+ l+++a+ l +   +eL+elre+la+++ +e+   +kela+ +e   +  ++ + ++ 
  KOO23957.1  23 ILSQLESDVggNILTDADSKSGSSGEQLRAQQQAHERELEEeLERQAARLRAAHDAELAELRERLAAQHaSELGTMRKELATAKEAARAAGASGQGATR 121
                 566666664336777777777788889999999999998752566888999999***********9876258999999999999999999999999999 PP

        Spc7 242 qkseleeeiaeaervle 258
                 + ++ ++++a+ e  l+
  KOO23957.1 122 EAQQQQQRVAALEACLR 138
                 99999999988887665 PP

>> Mitofilin  Mitochondrial inner membrane protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3  12.6   1.5e-05     0.055     373     478 ..      48     162 ..      47     170 .. 0.83

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 1.5e-05
   Mitofilin 373 teLerqaeaheehLkdvlveqeieLkrefqqeikekveeEragrllkLaellaklkglekaleshaea.edenrkaqqLwlAveaLrstlksasadk.. 468
                 ++L+ q++ahe  L+++l+ q++ L+ +++ e+ e  e+  a + ++L+++ ++l+  ++a+ +  ++     r aqq ++ v aL+++l+++ +    
  KOO23957.1  48 EQLRAQQQAHERELEEELERQAARLRAAHDAELAELRERLAAQHASELGTMRKELATAKEAARAAGASgQGATREAQQQQQRVAALEACLRQSGPLLsq 146
                 69*********************************988888***************999998876555156678999999**********999874455 PP

   Mitofilin 469 ......rtrPlkdelk 478
                       +  Pl  +l 
  KOO23957.1 147 aavalpPSDPLAAQLT 162
                 5555555566665555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (633 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1265  (0.0705561); expected 358.6 (0.02)
Passed bias filter:                      618  (0.0344693); expected 358.6 (0.02)
Passed Vit filter:                        69  (0.00384851); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.72u 0.32s 00:00:01.04 Elapsed: 00:00:00.47
# Mc/sec: 4081.66
//
Query:       KOO23958.1  [L=176]
Description: hypothetical protein Ctob_004800 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (176 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       419  (0.02337); expected 358.6 (0.02)
Passed bias filter:                      290  (0.0161749); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.26s 00:00:00.63 Elapsed: 00:00:00.40
# Mc/sec: 1322.60
//
Query:       KOO23959.1  [L=3109]
Description: fibrocystin-l [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    3.7e-45  151.9  33.4    3.3e-11   43.1   0.2    6.6  6  TIG           IPT/TIG domain
    1.2e-39  135.2   0.0    6.7e-25   87.5   0.0    2.9  2  G8            G8 domain
    2.4e-07   31.2   0.0    5.3e-07   30.0   0.0    1.7  1  ILEI          Interleukin-like EMT inducer
    9.9e-06   25.5  21.4     0.0021   17.9   4.5    5.9  5  Beta_helix    Right handed beta helix region
  ------ inclusion threshold ------
      0.017   15.2   0.0      0.049   13.7   0.0    1.8  1  F5_F8_type_C  F5/8 type C domain


Domain annotation for each model (and alignments):
>> TIG  IPT/TIG domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.6   1.6   1.8e-11   6.4e-08       1      75 [.      15     108 ..      15     114 .. 0.86
   2 !   34.3   0.1   5.1e-12   1.8e-08       1      83 [.     122     209 ..     122     211 .. 0.84
   3 !   20.1   2.5   1.4e-07    0.0005      18      79 ..     232     295 ..     219     300 .. 0.88
   4 !   43.1   0.2   9.3e-15   3.3e-11       2      70 ..     305     375 ..     304     385 .. 0.89
   5 !   38.7   2.6   2.2e-13   7.7e-10       1      83 [.    1007    1100 ..    1007    1102 .. 0.90
   6 ?   -0.9   0.0      0.49   1.8e+03      12      28 ..    2245    2261 ..    2237    2279 .. 0.83

  Alignments for each domain:
  == domain 1  score: 32.6 bits;  conditional E-value: 1.8e-11
         TIG   1 PvissisPnsgsasgGttititGtnFgtnssdssvtiggtpctvta.svssttl...................vcttPpgpsg.llnvsvlvdgaq 75 
                 Pv++  sP +  a+ G+titi+G+ F+t++ +++vtig++pc+v +  v+st +                   +c +P   s  ++++sv v g++
  KOO23959.1  15 PVLTRTSPLT--ANEGDTITIKGHAFSTTAGENMVTIGSEPCDVLTaAVDSTFVppnctalsctqemrtlvslTCRLPILDSTvPHTISVSVSGKG 108
                 7888888865..555******************************9866666667777788999999999***********888********9943 PP

  == domain 2  score: 34.3 bits;  conditional E-value: 5.1e-12
         TIG   1 PvissisPnsgsasgGttititGtnFgtnssdssvtiggtpctvtasvssttlvcttPpgp....sgllnvsvlvdg..aqlrsdnttf 83 
                 Pvi+s sP +gs +gGt++++ G+++++   d+ v++g+  c v  +++ ++++c+t +++    +   ++ v v+g  a++ s + tf
  KOO23959.1 122 PVIRSMSPIRGSLAGGTLVNLYGDGLSKRMGDLDVRLGSVICRVL-TSNASHVTCLTNSHTtltqDRVETLAVRVRGvlAGGASFSFTF 209
                 9********************************************.**************98886224445555555446666666655 PP

  == domain 3  score: 20.1 bits;  conditional E-value: 1.4e-07
         TIG  18 tititGtnFgtnssdssvtiggtpctvtasvssttlvcttPpgpsgllnvsvlvdg..aqlrsd 79 
                 ++t++G++F + +s + ++ig+t c+ t + +st+++c + p  sg+  v+++++g  a ++s+
  KOO23959.1 232 LVTVSGSGFLSPASANVIYIGSTRCVPTGTGTSTQITCNASPPLSGSQAVTLVNVGgsARGSSS 295
                 69**************************************999999999999888866555554 PP

  == domain 4  score: 43.1 bits;  conditional E-value: 9.3e-15
         TIG   2 vissisPnsgsasgGttititGtnFgtnssdssvtiggtpctvtasvssttlvcttPpgp.....sgllnvsvl 70 
                 ++s +sP++ s +gG  ++i+G +F  ++++s+vt++g  c+++ sv st+l+ct+P++      +++ln+sv 
  KOO23959.1 305 TLSGLSPATVSLAGGAELVINGAGF--SETSSRVTVCGVTCPIK-SVASTSLRCTVPSRLlllegTQGLNLSVA 375
                 78999********************..*****************.*************9988865556666664 PP

  == domain 5  score: 38.7 bits;  conditional E-value: 2.2e-13
         TIG    1 PvissisPnsgsasgGttititGtnF..gtnssdssvtiggtpctvta.svssttlvcttPpgp......sgllnvsvlvdg..aqlrsdnttf 83  
                  P + s+sP +gs++gGt +tit  ++  + ++s++svti g++ctv+  s ss++++ctt ++       +gl +v+++  +   +  ++  t+
  KOO23959.1 1007 PRVLSVSPRRGSTAGGTALTITVEGLptSVTASQVSVTIAGKACTVSLaSASSNQVRCTTGSYGvtslanPGLGSVQLTIASvgTAAATAEATY 1100
                  7899**********************9999*****************9***************999***9999999999988665555555555 PP

  == domain 6  score: -0.9 bits;  conditional E-value: 0.49
         TIG   12 sasgGttititGtnFgt 28  
                  +a+gG++ t++G +F++
  KOO23959.1 2245 NANGGSRATLHGVHFEN 2261
                  789************33 PP

>> G8  G8 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   87.5   0.0   1.9e-28   6.7e-25       1     122 [.    1111    1232 ..    1111    1233 .. 0.88
   2 !   44.5   0.0   4.1e-15   1.5e-11       8     122 ..    2001    2116 ..    1994    2117 .. 0.87

  Alignments for each domain:
  == domain 1  score: 87.5 bits;  conditional E-value: 1.9e-28
          G8    1 tWggse..vP...qegdnvvIpagktvlldvsspklrsllveGtLifsddksdielnaeyilvqggGkleiGteeepfkgkatItLyGteewsstel 92  
                  tWgg+   +P   ++gd+v I++g+++lld +s +l  l+v+G+L+f d+  +i+l+a+yi v g G++++Gte epf +ka ItL+G  +  s+e+
  KOO23959.1 1111 TWGGEGytIPgleTAGDSVWIQNGQRILLD-CSVRLYMLIVQGVLQF-DR-VNINLDANYIFVMG-GSFIVGTEREPFMQKAVITLHG--SPVSQEI 1201
                  576665665555489**************9.9999************.88.9************6.9*********************..888899* PP

          G8   93 pdlgaKvlavsngGtlelhGqprkk..twtkL 122 
                  p +gaK+l + +++tl+lhG+p     t+tkL
  KOO23959.1 1202 PVYGAKTLSC-RFCTLDLHGKPLLAgrTHTKL 1232
                  ********99.68*******997543377777 PP

  == domain 2  score: 44.5 bits;  conditional E-value: 4.1e-15
          G8    8 PqegdnvvIpagktvlld.vsspklrsllveGtLifsddk.sdielnaeyilvqggGkleiGteeepfkgkatItLyGteewsstelpdlgaKvlav 102 
                  P  ++nv+I+a +tv+ld +   +l sl+v G+L ++++  + i+l+  +i ++ gGk+ +G+  + fkg+++  L G+e ++s+    l+ +v+ v
  KOO23959.1 2001 PGFKSNVTIKACRTVVLDfNLDVQLYSLVVWGVLDIENRPdAIINLRSVCINIKPGGKIVAGSAVNYFKGTLQFHLVGDELTESAHCGGLKGRVFDV 2097
                  77799*************999999************766578899*********************************5555555555555588888 PP

          G8  103 sngGtlelhG.qprkktwtkL 122 
                     G lel+G +p  k w++L
  KOO23959.1 2098 --NGALELYGdAPIGKMWSRL 2116
                  ..7*******88889999998 PP

>> ILEI  Interleukin-like EMT inducer
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.0   0.0   1.5e-10   5.3e-07      16      89 .]     655     730 ..     642     730 .. 0.80

  Alignments for each domain:
  == domain 1  score: 30.0 bits;  conditional E-value: 1.5e-10
        ILEI  16 ldsksFdty.e.eeskrlveflksipdgsiVlvavkdea.ssnlsdearkaleslGskkiknlgfrdswafigrkGs 89 
                  ++  Fdt  + + +++l+ +++++p g+ V++a++      + ++++++++++lG++++ +    d +a++g+kG+
  KOO23959.1 655 PRTACFDTKtQgQGAEKLASWIDGLPLGTQVMIASCSRLsWAHNRNNLTSVFATLGARNPPTR-IDDAYALVGFKGA 730
                 45678***76336666**********************954588899***********66554.59**********6 PP

>> Beta_helix  Right handed beta helix region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.9   4.5     6e-07    0.0021      33     144 ..    1354    1490 ..    1315    1493 .. 0.73
   2 ?    3.4   0.4     0.018        64      14      76 ..    1520    1611 ..    1512    1617 .. 0.47
   3 ?    1.4   0.0      0.07   2.5e+02      34      72 ..    1811    1848 ..    1763    1930 .. 0.61
   4 !    5.5   0.9    0.0039        14      55     157 ..    2250    2378 ..    2236    2379 .. 0.76
   5 !    7.2   0.0    0.0012       4.3       2      90 ..    2362    2466 ..    2361    2496 .. 0.66

  Alignments for each domain:
  == domain 1  score: 17.9 bits;  conditional E-value: 6e-07
                  -......EEES-EEES-SS-SEEE-TT.........-S-EEES-EEE---SEEE-TT--S--EEES-EEES-SS-SEE-TT..-S--EEES-EEEST CS
  Beta_helix   33 n.....vvienneiannsgsGiyilgs.........snntisnntisdnngggialfgasnnlienneitdnggsGiylny..ssnntienNiidnn 113 
                  n     ++ien e+ + +++G   ++           n+ +++n+i++ ++ +ia+ g ++  +++n  ++++g+ +++++   + n+i++N   n 
  KOO23959.1 1354 NgesliARIENIEVRYAGQFGRMGRYPihfhmigavRNSYVRRNSIHHTYNRAIAIHGVHYLRVQGNVAFETRGHTYFVEDgvETKNVITGNLGANT 1450
                  1566666777777777444444444445555556689*************************************999999878899********999 PP

                  T.......--SEE---TT.........---EEES-EEES-SSEEEE- CS
  Beta_helix  114 a.......gsGividdss.........snvtvtnNtitnnkgaGiav 144 
                  +                +          +++v+ N++ ++  +G+++
  KOO23959.1 1451 ResftgltS-------DAtpatywlvnGDNYVERNIAAGSTHYGFWF 1490
                  966554442.......3333555557779999999999999999875 PP

  == domain 2  score: 3.4 bits;  conditional E-value: 0.018
                  ESEEEES-SS-SEEE-SSS-.........................EEES-EEES.....-SS-SEEE-TT-S-EEES-EEE---SEEE-TT- CS
  Beta_helix   14 knntisnsggyGiylrgssn........................vvienneian.....nsgsGiyilgssnntisnntisdnngggialfg 76  
                   +n+ +n+g+yG+ + ++++                        +++  ++++      n+ +Gi+  +++ + i + ++ dn   gi  +g
  KOO23959.1 1520 ADNEAHNNGRYGLRIFTGRSphngegmpgfypvtarscdpvgpnNTFAISRFERqyswrNGKNGISFGSVAAVHIVDAVVADNCMRGIEGTG 1611
                  44555555555555555555555555555555444444444444222222222233334555555555555555555555555545544444 PP

  == domain 3  score: 1.4 bits;  conditional E-value: 0.07
                  .EEES-EEES-SS-SEEE-TT-S-EEES-EEE---SEEE CS
  Beta_helix   34 vvienneiannsgsGiyilgssnntisnntisdnngggi 72  
                  ++ie  +i++ ++ Giy+++ +++t+ +n++   +++ +
  KOO23959.1 1811 MLIETMRISHRNQQGIYVRS-DDATFLRNKWMPAGQFNF 1848
                  55666666666666666664.666665555554444444 PP

  == domain 4  score: 5.5 bits;  conditional E-value: 0.0039
                  -S-EEES-EEE---.............SEEE-TT--S--EEES-EEES-SS-SEE-TT-S--EEES-EEESTT--SEE---TT..---EEES-EEES CS
  Beta_helix   55 snntisnntisdnn.............gggialfgasnnlienneitdnggsGiylnyssnntienNiidnnagsGividdss..snvtvtnNtitn 136 
                  s++t+++ ++++++              +  +++  +   i+ + ++ + g+G++ n+ ++   enNi+   a  G+ +  s+   n++v++  +++
  KOO23959.1 2250 SRATLHGVHFENGGaflpsvvsireerKVVPMIRCKGTCDIRSSVMIPRMGHGVEDNTLNDGHYENNIVWRGA-TGFRVGGSArvINNVVFGALMSQ 2345
                  5666666666666655555555555555555566566666777777777777888888888889999999999.*********99888899999999 PP

                  -S............SEEEE-TT-SS--EEES-E CS
  Beta_helix  137 nk............gaGiavvgsssnvtvrnNt 157 
                  n             + G+++ ++++ +t+ +N 
  KOO23959.1 2346 NPgsqgdpgdladgDSGFQILDNGWRLTFIGNA 2378
                  999999999999999999999999999999996 PP

  == domain 5  score: 7.2 bits;  conditional E-value: 0.0012
                  SEEE-SS-E..EEESEEEES-SS-SEEE-SSS-...EEES-EEES-SS-SEEE-TT.............-S-EEES-EEE---SEEE-TT.--S--E CS
  Beta_helix    2 gisingssn.vtiknntisnsggyGiylrgssn..vvienneiannsgsGiyilgs.............snntisnntisdnngggialf.gasnnl 81  
                  g+ i ++++ +t+ +n + ++ g ++ ++g      +++nn++++  + Gi+i+g+              + ++s+ ti++  + +++ + g+   +
  KOO23959.1 2362 GFQILDNGWrLTFIGNAVAGAEGPCLGFKGFAMwqSRFRNNTLHS-CEIGIGIKGDvmsrpdeirfdggGYGVVSDLTIYRIRNIAVWGYsGSPAPM 2457
                  666666666699999999999888888888888888999999999.777777777733333333333334445555555544466666665555555 PP

                  EES-EEES- CS
  Beta_helix   82 ienneitdn 90  
                  i+n +i d 
  KOO23959.1 2458 ISNVRIADS 2466
                  555555554 PP

>> F5_F8_type_C  F5/8 type C domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.0   1.4e-05     0.049       5      60 ..     861     915 ..     854     976 .. 0.68

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 1.4e-05
                   SSCSSTTTGGGGGGSSSTTSSEEESSSSTTEEEEEEEEEEEEEEEEEEEECSSTT.S CS
  F5_F8_type_C   5 sseesgewpaaaaldGnkntaWsssssddkqwlqvdLgkpkkidgvvtqgrqdgg.n 60 
                   +s + + ++a  a+dG+ +++W s + +d   ++vdLg  + i+++ +++   ++  
    KOO23959.1 861 NS-YGSRHGAGLATDGDGSSYWLSVGRND-TLFTVDLGMDTAIRALNFTWKYPAStV 915
                   33.366779**************999998.9*******************7554433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (3109 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       414  (0.0230911); expected 358.6 (0.02)
Passed bias filter:                      330  (0.0184059); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 1.21u 0.28s 00:00:01.49 Elapsed: 00:00:00.48
# Mc/sec: 19429.71
//
Query:       KOO23960.1  [L=206]
Description: hypothetical protein Ctob_011878 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (206 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       369  (0.0205812); expected 358.6 (0.02)
Passed bias filter:                      328  (0.0182944); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.39u 0.23s 00:00:00.62 Elapsed: 00:00:00.38
# Mc/sec: 1636.23
//
Query:       KOO23961.1  [L=211]
Description: hypothetical protein Ctob_008888 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    0.00039   20.0   0.4    0.00082   19.0   0.4    1.5  1  TPR_11    TPR repeat
    0.00086   19.2   0.3    0.00086   19.2   0.3    1.9  2  TPR_2     Tetratricopeptide repeat
     0.0016   18.2   0.3      0.003   17.3   0.3    1.5  1  TPR_1     Tetratricopeptide repeat
     0.0048   16.9   8.8       0.16   12.1   4.3    2.3  2  MIT       MIT (microtubule interacting and transport) domain
  ------ inclusion threshold ------
       0.13   12.9   0.3       0.13   12.9   0.3    1.9  2  TPR_16    Tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> TPR_11  TPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.0   0.4   2.3e-07   0.00082       1      22 [.     180     201 ..     180     202 .. 0.96

  Alignments for each domain:
  == domain 1  score: 19.0 bits;  conditional E-value: 2.3e-07
      TPR_11   1 GdayyeqGkyeeAieaYkkAlk 22 
                 G+a ++ Gk+eeAi +Y +Al+
  KOO23961.1 180 GNAAFKEGKLEEAIVKYDEALA 201
                 9*******************96 PP

>> TPR_2  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.5       2.6   9.2e+03      15      22 ..      53      60 ..      51      70 .. 0.66
   2 !   19.2   0.3   2.4e-07   0.00086       3      32 ..     175     204 ..     173     206 .. 0.89

  Alignments for each domain:
  == domain 1  score: -2.7 bits;  conditional E-value: 2.6
       TPR_2 15 gdyeeAle 22
                ++ eeA++
  KOO23961.1 53 KQREEAEK 60
                67777776 PP

  == domain 2  score: 19.2 bits;  conditional E-value: 2.4e-07
       TPR_2   3 alynlGlayyklgdyeeAleafekAleldP 32 
                 a  + G+a++k g++eeA+  +++Al+  P
  KOO23961.1 175 AKKAEGNAAFKEGKLEEAIVKYDEALARLP 204
                 66789*********************9877 PP

>> TPR_1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   0.3   8.5e-07     0.003       7      31 ..     179     203 ..     173     204 .. 0.86

  Alignments for each domain:
  == domain 1  score: 17.3 bits;  conditional E-value: 8.5e-07
                 HHHHHHHTT-HHHHHHHHHHHHHHS CS
       TPR_1   7 lGnayfklgkydeAleyyekALeln 31 
                  Gna fk gk++eA+  y++AL   
  KOO23961.1 179 EGNAAFKEGKLEEAIVKYDEALARL 203
                 69********************865 PP

>> MIT  MIT (microtubule interacting and transport) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.1   4.3   4.5e-05      0.16      32      64 ..      40      73 ..      39      74 .. 0.92
   2 !    7.1   0.1    0.0015       5.5      16      34 ..     185     203 ..     175     210 .. 0.88

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 4.5e-05
         MIT 32 elLlqalke.kneerrellrekieeYleRaeeLk 64
                e+L+q+++e +  ++re  ++k  +  +Rae+Lk
  KOO23961.1 40 EYLQQVMAEdNRNKQREEAEKKRLKAAARAEKLK 73
                8*******8766699******************9 PP

  == domain 2  score: 7.1 bits;  conditional E-value: 0.0015
         MIT  16 nagnyeeAlelYkealelL 34 
                 ++g+ eeA+ +Y eal  L
  KOO23961.1 185 KEGKLEEAIVKYDEALARL 203
                 689************9766 PP

>> TPR_16  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.1       1.3   4.5e+03      46      56 ..      59      69 ..      57      76 .. 0.70
   2 ?   12.9   0.3   3.7e-05      0.13      33      65 ..     172     204 ..     168     207 .. 0.84

  Alignments for each domain:
  == domain 1  score: -1.6 bits;  conditional E-value: 1.3
      TPR_16 46 rqgrlaeAaal 56
                +++rl++Aa +
  KOO23961.1 59 EKKRLKAAARA 69
                66777777733 PP

  == domain 2  score: 12.9 bits;  conditional E-value: 3.7e-05
      TPR_16  33 aaeAllllgdaalrqgrlaeAaalyraalraap 65 
                 a+eA  + g+aa++ g l+eA+  y++al+  p
  KOO23961.1 172 AVEAKKAEGNAAFKEGKLEEAIVKYDEALARLP 204
                 78999999**************88888888777 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (211 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1340  (0.0747392); expected 358.6 (0.02)
Passed bias filter:                      851  (0.047465); expected 358.6 (0.02)
Passed Vit filter:                        80  (0.00446204); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.49u 0.24s 00:00:00.73 Elapsed: 00:00:00.41
# Mc/sec: 1546.98
//
Query:       KOO23962.1  [L=540]
Description: hypothetical protein Ctob_008889, partial [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      2e-06   27.6   0.6      0.048   13.9   0.0    3.5  4  TPR_8     Tetratricopeptide repeat
    3.1e-06   26.8   2.9     0.0034   17.1   0.2    3.4  4  TPR_1     Tetratricopeptide repeat
    6.2e-06   25.9   8.1      0.017   15.2   0.2    3.5  4  TPR_2     Tetratricopeptide repeat
     0.0016   18.9   3.7       0.25   11.9   0.2    3.8  3  TPR_19    Tetratricopeptide repeat
     0.0043   15.4   0.0      0.037   12.3   0.0    2.1  2  SEN1_N    SEN1 N terminal
     0.0044   17.1   0.8     0.0044   17.1   0.8    3.0  3  TPR_9     Tetratricopeptide repeat
     0.0076   16.5   4.7      0.033   14.5   1.8    3.2  3  TPR_12    Tetratricopeptide repeat
  ------ inclusion threshold ------
      0.014   16.2   0.1      0.014   16.2   0.1    4.8  5  TPR_14    Tetratricopeptide repeat
      0.023   13.9   0.1      0.086   12.0   0.0    2.0  2  TPR_15    Tetratricopeptide repeat
       0.16   11.8   0.0        0.5   10.2   0.0    1.8  1  CdvA      CdvA-like coiled-coil domain
       0.19   12.1   0.4         34    5.1   0.0    3.4  3  TPR_17    Tetratricopeptide repeat
        0.2   11.7   1.7         20    5.5   0.0    4.0  3  TPR_7     Tetratricopeptide repeat
        1.2    9.9   4.5          5    7.8   0.1    3.3  3  TPR_16    Tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> TPR_8  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.0   0.0   0.00061      0.84       2      32 ..      19      49 ..      18      49 .. 0.95
   2 !   13.9   0.0   3.5e-05     0.048       2      33 ..      53      84 ..      52      85 .. 0.92
   3 ?   -3.1   0.0       9.6   1.3e+04       7      25 ..     119     137 ..     118     138 .. 0.79
   4 ?   -2.4   0.0       5.9   8.2e+03      19      29 ..     453     463 ..     449     464 .. 0.73

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.00061
                CHHHHHHHHHHHTT-HHHHHHHHHHHHHHHH CS
       TPR_8  2 eayynlgsiylklgdyeeAkeyyekaleldp 32
                ++y n + ++l+lg +e+  +    a+e+dp
  KOO23962.1 19 KLYGNRAECHLQLGHFEQCLADASLAIEYDP 49
                689**************************98 PP

  == domain 2  score: 13.9 bits;  conditional E-value: 3.5e-05
                CHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH CS
       TPR_8  2 eayynlgsiylklgdyeeAkeyyekaleldpd 33
                +a ++ +++ + lg++e A+++++ al++ p 
  KOO23962.1 53 KAFVRRAKAAQALGQHEVAEQCLRDALDMTPG 84
                688999**********************9985 PP

  == domain 3  score: -3.1 bits;  conditional E-value: 9.6
                 HHHHHHHTT-HHHHHHHHH CS
       TPR_8   7 lgsiylklgdyeeAkeyye 25 
                 l+s+++ +g   e ++ ++
  KOO23962.1 119 LSSLLKRKGTAAEVIAIFK 137
                 7899999998888888877 PP

  == domain 4  score: -2.4 bits;  conditional E-value: 5.9
                 HHHHHHHHHHH CS
       TPR_8  19 eAkeyyekale 29 
                  + +++e+a+e
  KOO23962.1 453 HSRQALERAVE 463
                 56788888887 PP

>> TPR_1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   0.2   2.4e-06    0.0034       2      32 ..      19      49 ..      18      49 .. 0.96
   2 !    8.3   0.0    0.0016       2.2       2      32 ..      53      83 ..      52      85 .. 0.90
   3 ?   -3.4   0.0       7.8   1.1e+04      13      22 ..     454     463 ..     448     464 .. 0.52
   4 ?   -2.0   0.0       2.8   3.8e+03      15      26 ..     511     522 ..     509     523 .. 0.82

  Alignments for each domain:
  == domain 1  score: 17.1 bits;  conditional E-value: 2.4e-06
                HHHHHHHHHHHHTT-HHHHHHHHHHHHHHST CS
       TPR_1  2 kalynlGnayfklgkydeAleyyekALelnP 32
                k + n++ ++++lg ++++l++ + A+e +P
  KOO23962.1 19 KLYGNRAECHLQLGHFEQCLADASLAIEYDP 49
                679**************************99 PP

  == domain 2  score: 8.3 bits;  conditional E-value: 0.0016
                HHHHHHHHHHHHTT-HHHHHHHHHHHHHHST CS
       TPR_1  2 kalynlGnayfklgkydeAleyyekALelnP 32
                ka+ +++ a + lg+++ A+++ + AL   P
  KOO23962.1 53 KAFVRRAKAAQALGQHEVAEQCLRDALDMTP 83
                7999**********************98765 PP

  == domain 3  score: -3.4 bits;  conditional E-value: 7.8
                 HTT-HHHHHH CS
       TPR_1  13 klgkydeAle 22 
                 + + ++ A+e
  KOO23962.1 454 SRQALERAVE 463
                 5555555555 PP

  == domain 4  score: -2.0 bits;  conditional E-value: 2.8
                 T-HHHHHHHHHH CS
       TPR_1  15 gkydeAleyyek 26 
                 g +  A++++++
  KOO23962.1 511 GAFHAAIDAFDE 522
                 66889****986 PP

>> TPR_2  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.2   1.2e-05     0.017       3      32 ..      20      49 ..      18      49 .. 0.95
   2 !   14.5   0.0   2.1e-05     0.029       2      34 .]      53      85 ..      52      85 .. 0.93
   3 ?   -3.0   0.0       8.4   1.2e+04       1       8 [.     417     424 ..     417     425 .. 0.84
   4 ?   -3.1   0.1       8.9   1.2e+04      20      29 ..     454     463 ..     452     464 .. 0.72

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 1.2e-05
       TPR_2  3 alynlGlayyklgdyeeAleafekAleldP 32
                ++ n+++++++lg++e++l++   A+e+dP
  KOO23962.1 20 LYGNRAECHLQLGHFEQCLADASLAIEYDP 49
                788**************************9 PP

  == domain 2  score: 14.5 bits;  conditional E-value: 2.1e-05
       TPR_2  2 ealynlGlayyklgdyeeAleafekAleldPnn 34
                +a  ++++a+ +lg++e A+++++ Al   P+n
  KOO23962.1 53 KAFVRRAKAAQALGQHEVAEQCLRDALDMTPGN 85
                57889************************9987 PP

  == domain 3  score: -3.0 bits;  conditional E-value: 8.4
       TPR_2   1 aealynlG 8  
                 aeal++lG
  KOO23962.1 417 AEALHRLG 424
                 79999999 PP

  == domain 4  score: -3.1 bits;  conditional E-value: 8.9
       TPR_2  20 AleafekAle 29 
                  ++a+e+A+e
  KOO23962.1 454 SRQALERAVE 463
                 5778888887 PP

>> TPR_19  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.0   0.0     0.026        36      24      44 ..      17      37 ..       6      39 .. 0.79
   2 !   11.9   0.2   0.00018      0.25      17      65 ..      44      92 ..      38      94 .. 0.90
   3 ?    0.0   0.1      0.91   1.3e+03       9      25 ..     442     458 ..     442     480 .. 0.81

  Alignments for each domain:
  == domain 1  score: 5.0 bits;  conditional E-value: 0.026
      TPR_19 24 naearllLAeallalgqldeA 44
                ++ +  + Ae++l+lg++++ 
  KOO23962.1 17 YGKLYGNRAECHLQLGHFEQC 37
                56677788**********995 PP

  == domain 2  score: 11.9 bits;  conditional E-value: 0.00018
      TPR_19 17 alqedpknaearllLAeallalgqldeAealLdalpeedpddaryasLl 65
                a+++dp +  a  + A+a  algq + Ae++L ++++++p + ++ sL+
  KOO23962.1 44 AIEYDPCSIKAFVRRAKAAQALGQHEVAEQCLRDALDMTPGNKEVLSLQ 92
                556778888899999***************************9999997 PP

  == domain 3  score: 0.0 bits;  conditional E-value: 0.91
      TPR_19   9 eAlalleqalqedpkna 25 
                 +Al+ll++++q++ + +
  KOO23962.1 442 AALKLLRAMMQHSRQAL 458
                 6999****999988744 PP

>> SEN1_N  SEN1 N terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.7   0.0    0.0053       7.4     521     571 ..     240     290 ..     235     293 .. 0.83
   2 !   12.3   0.0   2.7e-05     0.037     518     573 ..     281     336 ..     277     339 .. 0.90

  Alignments for each domain:
  == domain 1  score: 4.7 bits;  conditional E-value: 0.0053
      SEN1_N 521 arllerlsdfsspselkellsdpeaaqalisllfspddelyqaalnllkqa 571
                 ++++  l+ ++++   ++++ dp+ a++++  l +pd++ +++a+ +++++
  KOO23962.1 240 KAAVKVLGTMAHRVAARKIMYDPDSAEGVMHVLSHPDSSQARPATYIIQAI 290
                 45555556666677899******************************9976 PP

  == domain 2  score: 12.3 bits;  conditional E-value: 2.7e-05
      SEN1_N 518 eliarllerlsdfsspselkellsdpeaaqalisllfspddelyqaalnllkqafd 573
                 ++ + +++ + d+++ s+l +lls p+a++ ++    s  ++++++a ++l  af+
  KOO23962.1 281 RPATYIIQAIDDLKDMSTLATLLSVPGACDTFWRESHSRREDIRTPARSILARAFG 336
                 55667888899999999***********************************9997 PP

>> TPR_9  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   0.8   3.2e-06    0.0044       4      65 ..      27      88 ..      25      96 .. 0.93
   2 ?   -1.9   0.1       2.8   3.8e+03      36      48 ..     449     461 ..     442     485 .. 0.56
   3 ?   -1.5   0.1       2.2     3e+03      40      53 ..     508     521 ..     506     522 .. 0.83

  Alignments for each domain:
  == domain 1  score: 17.1 bits;  conditional E-value: 3.2e-06
       TPR_9  4 iaireedweralavverllllaPddpeerrdRGlllaqlGclsaAladLeaylalapdapda 65
                ++++  ++e++la + + +  +P ++     R+ + + lG+ ++A ++L  +l+++p + ++
  KOO23962.1 27 CHLQLGHFEQCLADASLAIEYDPCSIKAFVRRAKAAQALGQHEVAEQCLRDALDMTPGNKEV 88
                7999*****************************************************76655 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 2.8
       TPR_9  36 GlllaqlGclsaA 48 
                 +++++ + +l+ A
  KOO23962.1 449 AMMQHSRQALERA 461
                 3333333333333 PP

  == domain 3  score: -1.5 bits;  conditional E-value: 2.2
       TPR_9  40 aqlGclsaAladLe 53 
                 a  G+++aA+++++
  KOO23962.1 508 ANHGAFHAAIDAFD 521
                 5679******9986 PP

>> TPR_12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.1   0.1     0.041        57      36      63 ..       9      36 ..       6      39 .. 0.79
   2 !   14.5   1.8   2.4e-05     0.033       6      74 ..      21      81 ..      18      83 .. 0.80
   3 ?   -1.6   0.0       2.5   3.5e+03      54      68 ..     407     421 ..     396     429 .. 0.53

  Alignments for each domain:
  == domain 1  score: 4.1 bits;  conditional E-value: 0.041
      TPR_12 36 llGpdhpltattlrnLgrlyralgryee 63
                ++G d + +   + n ++++++lg++e+
  KOO23962.1  9 AHGLDDDVYGKLYGNRAECHLQLGHFEQ 36
                5777778888889999999999999885 PP

  == domain 2  score: 14.5 bits;  conditional E-value: 2.4e-05
      TPR_12  6 lnnlaavlrrlgrydeAlellekaleiarrllGpdhpltattlrnLgrlyralgryeeAlelleealai 74
                + n+a+++++lg ++++l+    a      +  ++ p+ + +    + + +alg++e A++ l++al++
  KOO23962.1 21 YGNRAECHLQLGHFEQCLADASLA------I--EYDPCSIKAFVRRAKAAQALGQHEVAEQCLRDALDM 81
                556666666666666666665555......3..78899*****************************98 PP

  == domain 3  score: -1.6 bits;  conditional E-value: 2.5
      TPR_12  54 lyralgryeeAlell 68 
                 +++   + e A++l+
  KOO23962.1 407 ALETISDAEIAEALH 421
                 444444444444443 PP

>> TPR_14  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.0       5.2   7.1e+03       8      22 ..      25      39 ..      22      49 .. 0.60
   2 ?   16.2   0.1   9.9e-06     0.014       3      38 ..      54      89 ..      52      92 .. 0.91
   3 ?   -2.0   0.0       7.1   9.8e+03       6      27 ..     118     139 ..     114     146 .. 0.80
   4 ?   -1.5   0.1       4.6   6.3e+03      20      26 ..     454     460 ..     439     471 .. 0.49
   5 ?   -1.7   0.1       5.3   7.4e+03      13      27 ..     509     523 ..     496     528 .. 0.78

  Alignments for each domain:
  == domain 1  score: -1.6 bits;  conditional E-value: 5.2
      TPR_14  8 aeallalGdpdeAia 22
                ae +l+lG +++ +a
  KOO23962.1 25 AECHLQLGHFEQCLA 39
                555667777766554 PP

  == domain 2  score: 16.2 bits;  conditional E-value: 9.9e-06
      TPR_14  3 allalaeallalGdpdeAiallrralalaPddaeaw 38
                a  ++a+a  alG+++ A+++lr+al+  P++ e++
  KOO23962.1 54 AFVRRAKAAQALGQHEVAEQCLRDALDMTPGNKEVL 89
                77899*************************998875 PP

  == domain 3  score: -2.0 bits;  conditional E-value: 7.1
      TPR_14   6 alaeallalGdpdeAiallrra 27 
                 +l ++l + G  +e ia+++++
  KOO23962.1 118 RLSSLLKRKGTAAEVIAIFKQM 139
                 5778889999999999998875 PP

  == domain 4  score: -1.5 bits;  conditional E-value: 4.6
      TPR_14  20 Aiallrr 26 
                 ++++l+r
  KOO23962.1 454 SRQALER 460
                 2233333 PP

  == domain 5  score: -1.7 bits;  conditional E-value: 5.3
      TPR_14  13 alGdpdeAiallrra 27 
                 + G + +Ai+++++ 
  KOO23962.1 509 NHGAFHAAIDAFDEG 523
                 568899999999875 PP

>> TPR_15  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   6.2e-05     0.086     148     183 ..      54      89 ..      24      92 .. 0.88
   2 ?   -3.7   0.0         4   5.5e+03     114     134 ..     284     304 ..     279     308 .. 0.83

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 6.2e-05
      TPR_15 148 fllaraelyrqegqtdaAlrdyreAlalapdsselr 183
                  +++ra+++++ gq++ A +++r Al++ p+++e+ 
  KOO23962.1  54 AFVRRAKAAQALGQHEVAEQCLRDALDMTPGNKEVL 89 
                 6899****************************9985 PP

  == domain 2  score: -3.7 bits;  conditional E-value: 4
      TPR_15 114 ssalellerakdydriaellk 134
                 ++ +++++++kd++++a+ll 
  KOO23962.1 284 TYIIQAIDDLKDMSTLATLLS 304
                 567899999999999999986 PP

>> CdvA  CdvA-like coiled-coil domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.0   0.00036       0.5      30      83 ..     108     163 ..     102     169 .. 0.82

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.00036
        CdvA  30 alkklkekakelkeklkkr..lkeledqikslekalanlkisyasGEidEeaYksa 83 
                  l +l+e  + l++ lk++   +e+    k+++++l++lk+ +  G i +++Y+sa
  KOO23962.1 108 VLIELRELSSRLSSLLKRKgtAAEVIAIFKQMPTLLMALKLVHDVGNIGDRSYESA 163
                 66777777777777776653267888899*************************98 PP

>> TPR_17  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.1   0.0      0.11   1.6e+02      14      33 ..      19      38 ..      15      39 .. 0.88
   2 ?    5.1   0.0     0.024        34       5      30 ..      44      69 ..      43      73 .. 0.91
   3 ?   -3.0   0.0       9.7   1.3e+04       8      19 ..     162     174 ..     158     174 .. 0.73

  Alignments for each domain:
  == domain 1  score: 3.1 bits;  conditional E-value: 0.11
      TPR_17 14 daynnLAelllknGdlmtAr 33
                ++y n+Ae++l++G +++++
  KOO23962.1 19 KLYGNRAECHLQLGHFEQCL 38
                6899***********99986 PP

  == domain 2  score: 5.1 bits;  conditional E-value: 0.024
      TPR_17  5 aleldPnnadaynnLAelllknGdlm 30
                a+e+dP + +a+  +A++   +G+++
  KOO23962.1 44 AIEYDPCSIKAFVRRAKAAQALGQHE 69
                8**********************987 PP

  == domain 3  score: -3.0 bits;  conditional E-value: 9.7
      TPR_17   8 ldPn.nadaynnL 19 
                   Pn +a +y+ L
  KOO23962.1 162 SAPNyDAQVYFRL 174
                 5688569999976 PP

>> TPR_7  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.3   0.1      0.16   2.2e+02       2      17 ..      21      36 ..      20      36 .. 0.91
   2 ?    5.5   0.0     0.015        20       4      35 ..      57      86 ..      54      88 .. 0.83
   3 ?   -1.4   0.0       2.3   3.2e+03      13      29 ..     348     362 ..     344     369 .. 0.75

  Alignments for each domain:
  == domain 1  score: 2.3 bits;  conditional E-value: 0.16
       TPR_7  2 LlnLarlysrlGdyee 17
                + n a+++ +lG++e+
  KOO23962.1 21 YGNRAECHLQLGHFEQ 36
                7899**********97 PP

  == domain 2  score: 5.5 bits;  conditional E-value: 0.015
       TPR_7  4 nLarlysrlGdyeeAielyeqsLaltkdpeda 35
                + a + ++lG++e A+++++   al+  p+++
  KOO23962.1 57 RRAKAAQALGQHEVAEQCLRD--ALDMTPGNK 86
                6688999**************..888777765 PP

  == domain 3  score: -1.4 bits;  conditional E-value: 2.3
       TPR_7  13 GdyeeAielyeqsLalt 29 
                  +++++++l+eq   ++
  KOO23962.1 348 ERTKRLVGLLEQ--MTE 362
                 578999*****9..555 PP

>> TPR_16  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.0       2.5   3.5e+03      36      50 ..      20      34 ..      13      36 .. 0.80
   2 ?    7.8   0.1    0.0037         5       3      33 ..      58      85 ..      56      91 .. 0.88
   3 ?    1.5   0.3      0.36     5e+02      22      56 ..     432     464 ..     428     466 .. 0.85

  Alignments for each domain:
  == domain 1  score: -1.2 bits;  conditional E-value: 2.5
      TPR_16 36 Allllgdaalrqgrl 50
                 + ++++++l++g +
  KOO23962.1 20 LYGNRAECHLQLGHF 34
                57789******9976 PP

  == domain 2  score: 7.8 bits;  conditional E-value: 0.0037
      TPR_16  3 laraalragdyddAaaaleaalkrdpssPda 33
                +a+aa ++g+ + A+  l+ al++    P +
  KOO23962.1 58 RAKAAQALGQHEVAEQCLRDALDMT---PGN 85
                799*********************9...655 PP

  == domain 3  score: 1.5 bits;  conditional E-value: 0.36
      TPR_16  22 aalkrdpssPd.aaeAllllgdaalrqgrlaeAaal 56 
                 a+++r    P+ +a+  ll++ +   ++ l++A+++
  KOO23962.1 432 ALVARP---PLsCAALKLLRAMMQHSRQALERAVEY 464
                 678888...5559********************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (540 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       649  (0.0361983); expected 358.6 (0.02)
Passed bias filter:                      579  (0.032294); expected 358.6 (0.02)
Passed Vit filter:                        62  (0.00345808); expected 17.9 (0.001)
Passed Fwd filter:                        14  (0.000780858); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 0.61u 0.23s 00:00:00.84 Elapsed: 00:00:00.41
# Mc/sec: 3951.91
//
Query:       KOO23963.1  [L=348]
Description: hypothetical protein Ctob_008882 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    5.4e-08   32.6   0.4    1.1e-07   31.6   0.4    1.5  1  UBA          UBA/TS-N domain
  ------ inclusion threshold ------
      0.016   14.9   0.0      0.028   14.1   0.0    1.4  1  CUE          CUE domain
      0.016   15.1   1.6      0.037   14.0   1.6    1.6  1  zf-RING_5    zinc-RING finger domain
      0.018   14.7   0.8      0.036   13.8   0.8    1.5  1  zf-RING_11   RING-like zinc finger
      0.056   13.4   3.7       0.23   11.5   3.7    2.2  1  UIM          Ubiquitin interaction motif
      0.066   13.3   0.3       0.14   12.2   0.3    1.5  1  zf-C3H2C3    Zinc-finger
      0.094   12.9   0.0       0.22   11.7   0.0    1.6  1  UBA_5        UBA domain
       0.19   12.1   5.1          1    9.7   5.3    2.0  2  zf-RING_2    Ring finger domain
       0.27   11.1   1.7       0.75    9.7   1.7    1.8  1  zf-C3HC4_2   Zinc finger, C3HC4 type (RING finger)
        0.7    9.8   3.1       0.41   10.6   0.8    1.8  2  zf-C3HC4     Zinc finger, C3HC4 type (RING finger)
        5.5    7.0   7.0         37    4.3   3.8    2.4  2  Prok-RING_1  Prokaryotic RING finger family 1


Domain annotation for each model (and alignments):
>> UBA  UBA/TS-N domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.6   0.4   6.9e-11   1.1e-07       3      34 ..     257     288 ..     256     291 .. 0.94

  Alignments for each domain:
  == domain 1  score: 31.6 bits;  conditional E-value: 6.9e-11
                 HHHHHHHHHTTS-HHHHHHHHHHTTTSHHHHH CS
         UBA   3 eeaiqrLveMGFdreevveALratgnNeErAv 34 
                  e+ +++ +MGF r  ++ ALrat++N+++A+
  KOO23963.1 257 TEQMAQMASMGFGRRGCLAALRATDGNVDAAI 288
                 6999***************************8 PP

>> CUE  CUE domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   0.0   1.7e-05     0.028      22      41 ..     275     294 ..     274     295 .. 0.93

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 1.7e-05
                 HHHHHCTTTHHHHHHHHHHC CS
         CUE  22 avLrasngnvEatinaLLeg 41 
                 a+Lra++gnv+a+i + L++
  KOO23963.1 275 AALRATDGNVDAAIAIVLNM 294
                 68****************98 PP

>> zf-RING_5  zinc-RING finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   1.6   2.3e-05     0.037       2      43 ..      40      99 ..      39     100 .. 0.84

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 2.3e-05
   zf-RING_5  2 CnkCfekl..skeekfyltsCgHifCekClkkll................ekeavCpiCr 43
                C +C   +  +  ++++++sCgH+++ +C   +                    ++C +Cr
  KOO23963.1 40 CFVCVGTTegKAAKEVITLSCGHSVHAACWVPCVlptlgedsaqaryvedRLGRKCGFCR 99
                777777775555555**************9999999999999999999999999999998 PP

>> zf-RING_11  RING-like zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.8   2.2e-05     0.036       1      28 [.      39      68 ..      39      69 .. 0.88

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 2.2e-05
  zf-RING_11  1 eCsICLeefk..pgqalfilpCsHtFHfkC 28
                +C +C  + +    +++++l+C+H  H  C
  KOO23963.1 39 QCFVCVGTTEgkAAKEVITLSCGHSVHAAC 68
                7*******995445699***********99 PP

>> UIM  Ubiquitin interaction motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   3.7   0.00014      0.23       1      14 [.     313     326 ..     313     328 .. 0.93

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.00014
         UIM   1 dEdedLqrAlalSl 14 
                 +++++Lq+AlalS+
  KOO23963.1 313 EDEAELQAALALSM 326
                 69***********9 PP

>> zf-C3H2C3  Zinc-finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.3   8.7e-05      0.14      12      30 ..      55      73 ..      48      77 .. 0.79

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 8.7e-05
   zf-C3H2C3 12 fvaysCkHlvHakCadeev 30
                +   sC H+vHa C  + v
  KOO23963.1 55 VITLSCGHSVHAACWVPCV 73
                56779*********66655 PP

>> UBA_5  UBA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   0.00013      0.22       9      38 ..     249     277 ..     240     298 .. 0.72

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.00013
       UBA_5   9 PqeadPrlveslaqmlsmGfsdeGGWltrl 38 
                 P+   P   e +aqm smGf   G  l+ l
  KOO23963.1 249 PPPPLPHYTEQMAQMASMGFGRRGC-LAAL 277
                 455669999***********98764.4444 PP

>> zf-RING_2  Ring finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   5.3   0.00064         1       2      30 ..      39      69 ..      38      99 .. 0.69
   2 ?   -0.3   0.1      0.84   1.4e+03       2      12 ..      94     104 ..      93     107 .. 0.77

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 0.00064
   zf-RING_2  2 eCpICleel..ssadsvlllpCgHvfhreCl 30
                +C +C      + a++v++l CgH+ h  C 
  KOO23963.1 39 QCFVCVGTTegKAAKEVITLSCGHSVHAACW 69
                799**7444337778899999********96 PP

  == domain 2  score: -0.3 bits;  conditional E-value: 0.84
   zf-RING_2   2 eCpICleelss 12 
                 +C+ C  e+s+
  KOO23963.1  94 KCGFCRTEFSE 104
                 79999888865 PP

>> zf-C3HC4_2  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   1.7   0.00046      0.75       1      29 [.      39      71 ..      39      78 .. 0.69

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 0.00046
  zf-C3HC4_2  1 kCpiCldmlk....dpsvvtpCgHvfCqkCilr 29
                +C +C+   +    + + +  CgH+ ++ C+ +
  KOO23963.1 39 QCFVCVGTTEgkaaKEVITLSCGHSVHAACWVP 71
                688888766521112244559*********976 PP

>> zf-C3HC4  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.8   0.00025      0.41       1      30 [.      40      73 ..      40      81 .. 0.87
   2 ?   -2.4   0.1       2.9   4.7e+03       1      10 [.      95     104 ..      93     107 .. 0.72

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00025
                -TTT-S--SS-E.....E-TTS--B-CHHHHHHH CS
    zf-C3HC4  1 CpiCleeakepn....elleCkHsfCskCirkil 30
                C +C  + + +      +l C+Hs++ +C + ++
  KOO23963.1 40 CFVCVGTTEGKAakevITLSCGHSVHAACWVPCV 73
                88898888888888889************88765 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 2.9
                 -TTT-S--SS CS
    zf-C3HC4   1 CpiCleeake 10 
                 C  C +e++e
  KOO23963.1  95 CGFCRTEFSE 104
                 7778777766 PP

>> Prok-RING_1  Prokaryotic RING finger family 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.3   3.8     0.023        37       6      35 ..      39      69 ..      35      73 .. 0.80
   2 ?    3.2   0.1     0.053        86       4      17 ..      92     105 ..      89     108 .. 0.87

  Alignments for each domain:
  == domain 1  score: 4.3 bits;  conditional E-value: 0.023
  Prok-RING_1  6 kCpvCgkelkee.dDiVvCpeCgtpyHraCy 35
                 +C vC  + + +    V+   Cg + H aC+
   KOO23963.1 39 QCFVCVGTTEGKaAKEVITLSCGHSVHAACW 69
                 68999777765535668999*********** PP

  == domain 2  score: 3.2 bits;  conditional E-value: 0.053
  Prok-RING_1   4 gkkCpvCgkelkee 17 
                  g kC  C+ e++ee
   KOO23963.1  92 GRKCGFCRTEFSEE 105
                  78*********986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (348 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       366  (0.0204139); expected 358.6 (0.02)
Passed bias filter:                      302  (0.0168442); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.48u 0.23s 00:00:00.71 Elapsed: 00:00:00.43
# Mc/sec: 2433.38
//
Query:       KOO23964.1  [L=519]
Description: pepsin a-like protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.2e-23   82.3   0.0    5.5e-22   78.6   0.0    2.5  1  Asp       Eukaryotic aspartyl protease
    5.2e-05   23.5   0.1      0.084   13.1   0.1    2.5  2  TAXi_N    Xylanase inhibitor N-terminal


Domain annotation for each model (and alignments):
>> Asp  Eukaryotic aspartyl protease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   78.6   0.0   6.2e-26   5.5e-22       4     314 ..      25     376 ..      22     377 .. 0.75

  Alignments for each domain:
  == domain 1  score: 78.6 bits;  conditional E-value: 6.2e-26
                 EEEEETTT..TEEEEEEEETT--SEEEEBTTESTSHCHHTSS-B-GGG-TT-E..EEEEEEEEECTTSEEEEEEEEEEEEETTEEEEEE........EE CS
                 xxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx........xx RF
         Asp   4 geisiGtp..eqkftvifDTGSsdlWVpsskckkssackshstydpskSstyk..kngkslsisYGdgsvsGflsqdtvkvggltvknq........ef 90 
                 +   iGt+  +q + +++DTGS  l   s++c+ + ac +h+ +d++ Sst+   + ++++ ++YG+g+++   + d+v++ gl             ++
  KOO23964.1  25 TFAAIGTSsvPQPLALVVDTGSYVLVAASTYCT-QRACLNHRRFDSNMSSTFVeeAPNNAFLLRYGQGNITVHDASDQVAFLGLERATTpihesklvDI 122
                 55566665338**************999****9.89***************98334578899********************99855540000111144 PP

                 EEEEEESSHHHTTSSSSEEEE-S-GGGSCGGSCCHHHHHHHTTSSSSSEEEEEE-STTSSEEEEEESSEEGGGE.EEEEEEEEESS..TSSTEEEEEEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxx..xxxxxxxxxxx RF
         Asp  91 geatkepgstflaakfdGiLGlgfkeisveeatpvfdnlvsqglikepvfsvylnreeeeggeivfGgvDesky.kGsltyvpvts..kgywqielesv 186
                 g+ + ++   f +a+ dGi+Glg ++ +  + + + +++        + f++ l  + e  g  + G ++ + +      yv +++  k +w + l++v
  KOO23964.1 123 GLMSDQTLRGFSDAPYDGIMGLGKRKTTELNHQAFLEDME------IEGFTLCLG-DPELHGDGIGGRLEMQSMlDVGNPYVTLSTigKYVWGAMLDHV 214
                 555666667788999********66666555555555554......456*****9.77888888999998765415556677777776888******** PP

                 EETTEEE....EEEEEEEEEEETTCSSEEEEHHHHHHHHHHHTTEEEET......TCEEEEETTGGGGSEEEEEEETTEEEEEEGGGGEEEESSSTTSE CS
                 xxxxxxx....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx......xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
         Asp 187 tvggktv....lcssgcqailDtGTsllalptsivekiakaigakkses......egeyvvdCdslsslpdisftiggakitvpvselvlkeeeseesq 275
                 +v g+      +  s+c+ i+D+GT+ll +p+ +v+++   i+    es      +++ + +  ++ +lp++++ +gg+ +t+p++ ++ + e +  ++
  KOO23964.1 215 SVPGQPPlahcSALSECASIIDSGTTLLLFPEPVVDSLYYTIEDGCAESdclltlQNQTTCSGPHFDGLPQLELRVGGQMLTLPPRVYMGEMEVDVPTT 313
                 ***9987675556689*************************9988777778997755555555567788888888888888888877774443332222 PP

                 EEESE........................EECCTSSSEEEEHHHHTTEEEEEETTTTEEEEEE CS
                 xxxxx........................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
         Asp 276 Cilgl........................vseeegdlwiLGdvFlrsayvvfdldnnrvglAe 314
                   + +                         ++  g+++iLG  Flr++ v+f++++  +++Ae
  KOO23964.1 314 KEIKVgntevsvpwytpgvrcipllstidEQTTYGPMVILGMPFLRHYSVYFNRTTWDMSVAE 376
                 22222234556677777777777779987788889*******************999998887 PP

>> TAXi_N  Xylanase inhibitor N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.1   0.1   9.3e-06     0.084       1      52 [.      23      76 ..      23      83 .. 0.86
   2 !    7.8   0.0    0.0004       3.6     117     164 ..     121     171 ..      84     181 .. 0.68

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 9.3e-06
      TAXi_N  1 YlvsisiGtp..pqplklvvDtGsdltWvqCkpckacssqkkpvfdpsksstyk 52
                Y++   iGt   pqpl lvvDtGs ++    + c++++  +++ fd + sst+ 
  KOO23964.1 23 YTTFAAIGTSsvPQPLALVVDTGSYVLVAASTYCTQRACLNHRRFDSNMSSTFV 76
                6666777777669999*******************9999999999999999985 PP

  == domain 2  score: 7.8 bits;  conditional E-value: 0.0004
      TAXi_N 117 vfGCgk.snlgglaa.gadGilGLGrgk.lSlvsqlaskgslgnkFsyCLs 164
                  +G  + ++l+g+ +   dGi+GLG+ k   l  q+  ++   + F++CL 
  KOO23964.1 121 DIGLMSdQTLRGFSDaPYDGIMGLGKRKtTELNHQAFLEDMEIEGFTLCLG 171
                 455544444455544279*******86626688888888788889999993 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (519 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       440  (0.0245412); expected 358.6 (0.02)
Passed bias filter:                      389  (0.0216967); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.54u 0.26s 00:00:00.80 Elapsed: 00:00:00.43
# Mc/sec: 3631.39
//
Query:       KOO23965.1  [L=259]
Description: gpi mannosyltransferase 2 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    6.3e-31  108.1   3.1    7.8e-31  107.8   3.1    1.1  1  Mannosyl_trans2  Mannosyltransferase (PIG-V)
  ------ inclusion threshold ------
      0.016   14.1  10.2      0.022   13.6  10.2    1.2  1  DUF2079          Predicted membrane protein (DUF2079)


Domain annotation for each model (and alignments):
>> Mannosyl_trans2  Mannosyltransferase (PIG-V)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  107.8   3.1   8.7e-35   7.8e-31       9     252 ..       8     254 ..       3     257 .. 0.76

  Alignments for each domain:
  == domain 1  score: 107.8 bits;  conditional E-value: 8.7e-35
  Mannosyl_trans2   9 vlsrllvllLviLfrialipddtsealnppcllaspslvdslvekllen.lvsWDsvyflkiaenG.yeyeheyaflpllplfvsllskevlap 100
                      ++sr  +llL  L+   ++pd+       ++++ +p  +    +  l      WDs +fl ++  G  e+e  +af+p++pl ++ l+  +la 
       KOO23965.1   8 LFSRAATLLLA-LTADYVFPDHSPDGA--LRMDLPPECL---LSPALTSaFTRWDSAHFLSVTASGwAEHEYSHAFFPMFPLLIRWLA-ALLAH 94 
                      56666666554.444466766655432..3333344332...33334433789*************999******************9.66666 PP

  Mannosyl_trans2 101 lvgllslravlvlsvfslsillfllaavilsdvsvlvlkareasfkasllfclspaavflasiYseaLfallafsgvyslesgisissvllfal 194
                      + + l      +l+++ ls+  f++aa  l++++  vl++ + +  ++llfc+spa++f++++Y+e+ fa  +f+g+  le++  +++ +  al
       KOO23965.1  95 MLPPLCETELHILAGVLLSNSTFVVAACCLHRLGECVLQDARLARTSALLFCISPASIFFSTVYAESTFAAATFGGMLLLERSYAWAGSVALAL 188
                      66666666677788999***************************************************************************** PP

  Mannosyl_trans2 195 stivrsnglvsvgflmfsllqrffeaLielrkarkllkvl........iallLsvillflplvlfq 252
                      +t+ r+ngl+ v  + +  l+r  + L    + r+   +          + lL+v+l++ p+v++q
       KOO23965.1 189 ATATRANGLLHVLLVAHAGLRRCVQILDAPSPGRRQHAATavalagasLSMLLQVLLVVGPYVAWQ 254
                      *****************9999988877665544433222200001111345666666666666666 PP

>> DUF2079  Predicted membrane protein (DUF2079)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6  10.2   2.5e-06     0.022      48     193 ..      87     244 ..      56     252 .. 0.74

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 2.5e-06
     DUF2079  48 lllaplyalfPsv..ltLllvqallls.....lgglplyrlarerllsrrlalliallYllspvvinptlfdFhpevlaiPllllalllalrrrkwlll 139
                 +l+a+l +++P+     L ++  +lls     +++  l+rl +++l++ rla   all+  sp+ i+     + + ++a  + ++++l  l+r+ +++ 
  KOO23965.1  87 WLAALLAHMLPPLceTELHILAGVLLSnstfvVAACCLHRLGECVLQDARLARTSALLFCISPASIFF-STVYAESTFA-AATFGGML-LLERSYAWAG 182
                 666666666666311346666666666111114566688999999989****************9966.5678888888.66666666.9999999999 PP

     DUF2079 140 lvlilllllvredlslvvvilglwlilre.........rkrrkiglillllglawvilvtsvl 193
                  v+++l+ ++r+   l  v l   + lr+         ++rr  ++++++l+ a ++++ +vl
  KOO23965.1 183 SVALALATATRANGLLH-VLLVAHAGLRRcvqildapsPGRRQHAATAVALAGASLSMLLQVL 244
                 99999999999875555.555566777766777777778888889999999999988888877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (259 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       513  (0.0286129); expected 358.6 (0.02)
Passed bias filter:                      256  (0.0142785); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.44u 0.23s 00:00:00.67 Elapsed: 00:00:00.40
# Mc/sec: 1958.68
//
Query:       KOO23966.1  [L=348]
Description: hypothetical protein Ctob_008884 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    8.8e-34  113.5   3.8    3.2e-05   23.2   0.0    6.2  6  EF-hand_5       EF hand
    8.9e-34  112.5   0.8     0.0002   20.7   0.0    6.2  6  EF-hand_1       EF hand
    1.6e-31  105.5   0.3     0.0014   18.4   0.0    6.4  6  EF-hand_6       EF-hand domain
    1.8e-24   85.9   0.1    8.2e-07   29.4   0.0    3.9  4  EF-hand_7       EF-hand domain pair
    9.6e-18   63.8   4.7     0.0022   17.8   0.1    6.3  6  EF-hand_8       EF-hand domain pair
    4.4e-11   43.1   0.0     0.0057   17.0   0.0    3.6  3  SPARC_Ca_bdg    Secreted protein acidic and rich in cysteine 
    0.00067   19.9   0.3        4.4    7.6   0.0    3.2  3  Toprim          Toprim domain
     0.0018   18.4   6.0        1.8    8.8   0.7    4.6  5  Dockerin_1      Dockerin type I domain
     0.0029   17.9   1.4       0.39   11.1   0.1    3.3  3  TPR_20          Tetratricopeptide repeat
  ------ inclusion threshold ------
      0.012   15.9   0.1         13    6.2   0.0    3.9  5  EF-hand_14      EF-hand domain
      0.032   14.5   0.8        6.1    7.3   0.0    3.7  4  EF-hand_9       EF-hand domain
      0.038   13.8   0.0         19    5.2   0.0    4.0  6  EF-hand_13      EF-hand domain
      0.066   13.7   0.0        4.5    7.8   0.0    2.6  2  OAM_dimer       Dimerisation domain of d-ornithine 4,5-aminom
       0.14   12.3   0.0       0.34   11.1   0.0    1.6  1  Arm-DNA-bind_1  Bacteriophage lambda integrase, Arm DNA-bindi


Domain annotation for each model (and alignments):
>> EF-hand_5  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.2   0.0   1.1e-07   0.00014       3      23 ..      71      91 ..      70      94 .. 0.90
   2 !   13.7   0.1   2.5e-05     0.032       2      24 ..     104     127 ..     103     128 .. 0.89
   3 !   23.2   0.0   2.5e-08   3.2e-05       3      23 ..     155     175 ..     153     178 .. 0.89
   4 !   13.0   0.0   4.3e-05     0.055       4      23 ..     190     209 ..     187     212 .. 0.86
   5 !   14.9   0.0   1.1e-05     0.014       4      21 ..     233     250 ..     230     255 .. 0.87
   6 !   23.0   0.0   2.8e-08   3.6e-05       5      23 ..     268     286 ..     265     288 .. 0.90

  Alignments for each domain:
  == domain 1  score: 21.2 bits;  conditional E-value: 1.1e-07
                HHHHHH-SS-SSCE-HHHHHH CS
   EF-hand_5  3 dtFqaiDlNgDGkIskeELkt 23
                ++F+aiD+N DG Is+ EL+t
  KOO23966.1 71 AMFDAIDTNADGVISVVELRT 91
                69*****************98 PP

  == domain 2  score: 13.7 bits;  conditional E-value: 2.5e-05
                 HHHHHHH-SS-SSCE-HHHHHH.H CS
   EF-hand_5   2 kdtFqaiDlNgDGkIskeELkt.l 24 
                 +++F+ iD++  G  s+eEL++ +
  KOO23966.1 104 DKLFELIDADENGECSREELRNaF 127
                 469*****************9866 PP

  == domain 3  score: 23.2 bits;  conditional E-value: 2.5e-08
                 HHHHHH-SS-SSCE-HHHHHH CS
   EF-hand_5   3 dtFqaiDlNgDGkIskeELkt 23 
                 ++F+a+D NgDG +s++E ++
  KOO23966.1 155 AFFDAVDSNGDGAVSPQEMRK 175
                 69****************987 PP

  == domain 4  score: 13.0 bits;  conditional E-value: 4.3e-05
                 HHHHH-SS-SSCE-HHHHHH CS
   EF-hand_5   4 tFqaiDlNgDGkIskeELkt 23 
                 +F  +D++++G +s+ E ++
  KOO23966.1 190 FFALLDADKSGEVSRNEVRE 209
                 7999*************876 PP

  == domain 5  score: 14.9 bits;  conditional E-value: 1.1e-05
                 HHHHH-SS-SSCE-HHHH CS
   EF-hand_5   4 tFqaiDlNgDGkIskeEL 21 
                  F aiD+NgDG +   EL
  KOO23966.1 233 IFVAIDANGDGNVEQAEL 250
                 799***********9999 PP

  == domain 6  score: 23.0 bits;  conditional E-value: 2.8e-08
                 HHHH-SS-SSCE-HHHHHH CS
   EF-hand_5   5 FqaiDlNgDGkIskeELkt 23 
                 F  +D+NgDG Is+eEL++
  KOO23966.1 268 FATLDVNGDGLISREELRN 286
                 889**************85 PP

>> EF-hand_1  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5   0.0   1.6e-06    0.0021       3      28 ..      70      95 ..      68      96 .. 0.90
   2 !   17.7   0.1   1.4e-06    0.0018       3      26 ..     104     127 ..     102     130 .. 0.92
   3 !   17.9   0.0   1.2e-06    0.0015       2      27 ..     153     178 ..     152     180 .. 0.88
   4 !   17.5   0.0   1.7e-06    0.0021       3      26 ..     188     211 ..     186     214 .. 0.91
   5 !   14.3   0.0   1.7e-05     0.022       1      27 [.     229     255 ..     229     257 .. 0.89
   6 !   20.7   0.0   1.6e-07    0.0002       5      25 ..     267     287 ..     264     291 .. 0.90

  Alignments for each domain:
  == domain 1  score: 17.5 bits;  conditional E-value: 1.6e-06
                HHHHHHHTTTSSSEEEHHHHHHHHHH CS
   EF-hand_1  3 keiFrefDkDgdGkIdfeEfkellkk 28
                + +F+ +D++ dG I+  E+++ l++
  KOO23966.1 70 DAMFDAIDTNADGVISVVELRTHLSS 95
                78******************998765 PP

  == domain 2  score: 17.7 bits;  conditional E-value: 1.4e-06
                 HHHHHHHTTTSSSEEEHHHHHHHH CS
   EF-hand_1   3 keiFrefDkDgdGkIdfeEfkell 26 
                 +++F+++D D +G  ++eE+++++
  KOO23966.1 104 DKLFELIDADENGECSREELRNAF 127
                 89*******************998 PP

  == domain 3  score: 17.9 bits;  conditional E-value: 1.2e-06
                 HHHHHHHHTTTSSSEEEHHHHHHHHH CS
   EF-hand_1   2 lkeiFrefDkDgdGkIdfeEfkellk 27 
                  + +F+ +D +gdG ++ +E+++ ++
  KOO23966.1 153 ADAFFDAVDSNGDGAVSPQEMRKHVS 178
                 6899*****************98765 PP

  == domain 4  score: 17.5 bits;  conditional E-value: 1.7e-06
                 HHHHHHHTTTSSSEEEHHHHHHHH CS
   EF-hand_1   3 keiFrefDkDgdGkIdfeEfkell 26 
                 +++F+++D D++G ++++E +e++
  KOO23966.1 188 ERFFALLDADKSGEVSRNEVREAF 211
                 689******************997 PP

  == domain 5  score: 14.3 bits;  conditional E-value: 1.7e-05
                 HHHHHHHHHTTTSSSEEEHHHHHHHHH CS
   EF-hand_1   1 elkeiFrefDkDgdGkIdfeEfkellk 27 
                 e + iF  +D +gdG ++  E+  +l+
  KOO23966.1 229 EADTIFVAIDANGDGNVEQAELALYLS 255
                 5789******************98876 PP

  == domain 6  score: 20.7 bits;  conditional E-value: 1.6e-07
                 HHHHHTTTSSSEEEHHHHHHH CS
   EF-hand_1   5 iFrefDkDgdGkIdfeEfkel 25 
                 iF+ +D++gdG I++eE+++ 
  KOO23966.1 267 IFATLDVNGDGLISREELRNG 287
                 9*****************975 PP

>> EF-hand_6  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.2   0.0   1.3e-06    0.0017       4      30 ..      71      96 ..      68      97 .. 0.90
   2 !   14.9   0.0   1.4e-05     0.018       3      26 ..     104     127 ..     102     131 .. 0.92
   3 !   17.0   0.0   3.2e-06    0.0041       3      29 ..     154     179 ..     152     181 .. 0.88
   4 !   18.4   0.0   1.1e-06    0.0014       3      26 ..     188     211 ..     186     223 .. 0.90
   5 !   10.8   0.0    0.0003      0.38       3      27 ..     231     255 ..     229     260 .. 0.87
   6 !   17.9   0.0   1.5e-06     0.002       5      26 ..     267     288 ..     264     300 .. 0.89

  Alignments for each domain:
  == domain 1  score: 18.2 bits;  conditional E-value: 1.3e-06
   EF-hand_6  4 eaFklfDkdgdGkidaeElrkalrkal 30
                + F+++D++ dG i+  Elr +l+ + 
  KOO23966.1 71 AMFDAIDTNADGVISVVELRTHLS-SI 96
                68********************99.66 PP

  == domain 2  score: 14.9 bits;  conditional E-value: 1.4e-05
   EF-hand_6   3 reaFklfDkdgdGkidaeElrkal 26 
                 +++F+l+D d +G+ ++eElr+a+
  KOO23966.1 104 DKLFELIDADENGECSREELRNAF 127
                 589******************997 PP

  == domain 3  score: 17.0 bits;  conditional E-value: 3.2e-06
   EF-hand_6   3 reaFklfDkdgdGkidaeElrkalrka 29 
                 +++F++ D +gdG ++++E+rk+ + +
  KOO23966.1 154 DAFFDAVDSNGDGAVSPQEMRKHVS-S 179
                 679******************9987.5 PP

  == domain 4  score: 18.4 bits;  conditional E-value: 1.1e-06
   EF-hand_6   3 reaFklfDkdgdGkidaeElrkal 26 
                 +++F l+D d++G+++++E+r a+
  KOO23966.1 188 ERFFALLDADKSGEVSRNEVREAF 211
                 689*****************9876 PP

  == domain 5  score: 10.8 bits;  conditional E-value: 0.0003
   EF-hand_6   3 reaFklfDkdgdGkidaeElrkalr 27 
                 + +F ++D +gdG + ++El   l+
  KOO23966.1 231 DTIFVAIDANGDGNVEQAELALYLS 255
                 56899***************99887 PP

  == domain 6  score: 17.9 bits;  conditional E-value: 1.5e-06
   EF-hand_6   5 aFklfDkdgdGkidaeElrkal 26 
                 +F  +D++gdG i++eElr+ +
  KOO23966.1 267 IFATLDVNGDGLISREELRNGY 288
                 8*****************9865 PP

>> EF-hand_7  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.9   0.0   0.00037      0.47      47      68 ..      70      91 ..      59      94 .. 0.83
   2 !   23.4   0.1   4.9e-08   6.2e-05       7      70 ..      72     127 ..      68     128 .. 0.87
   3 !   29.4   0.0   6.4e-10   8.2e-07       7      70 ..     156     211 ..     150     212 .. 0.88
   4 !   28.5   0.0   1.2e-09   1.5e-06       5      70 ..     231     288 ..     227     289 .. 0.85

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00037
   EF-hand_7 47 ellfkefDtdkdGvisfdEFlk 68
                +++f+ +Dt+ dGvis  E+++
  KOO23966.1 70 DAMFDAIDTNADGVISVVELRT 91
                6899999******999988875 PP

  == domain 2  score: 23.4 bits;  conditional E-value: 4.9e-08
   EF-hand_7   7 aFkelDtdgdgyldkeellrllrkifqgagegsklsdeelellfkefDtdkdGvisfdEFlkly 70 
                 +F+++Dt+ dg +++ el+  + +     + g    +e+ ++lf+ +D d +G+ s++E+++++
  KOO23966.1  72 MFDAIDTNADGVISVVELR-THLS-----SIGYA--EEAADKLFELIDADENGECSREELRNAF 127
                 6****************99.5554.....66666..67899******************99876 PP

  == domain 3  score: 29.4 bits;  conditional E-value: 6.4e-10
   EF-hand_7   7 aFkelDtdgdgyldkeellrllrkifqgagegsklsdeelellfkefDtdkdGvisfdEFlkly 70 
                  F++ D++gdg ++++e+++ +       + g ++   + e++f  +D dk+G++s++E ++++
  KOO23966.1 156 FFDAVDSNGDGAVSPQEMRKHVS------SIGYEP--AAAERFFALLDADKSGEVSRNEVREAF 211
                 49***************996666......899994..4688******************99986 PP

  == domain 4  score: 28.5 bits;  conditional E-value: 1.2e-09
   EF-hand_7   5 keaFkelDtdgdgyldkeellrllrkifqgagegsklsdeelellfkefDtdkdGvisfdEFlkly 70 
                  ++F ++D +gdg ++++el  l+ +     + g     e+  ++f  +D ++dG is++E+++ y
  KOO23966.1 231 DTIFVAIDANGDGNVEQAELA-LYLS-----RKGYA--AEAAATIFATLDVNGDGLISREELRNGY 288
                 6789*****************.7773.....55555..56899******************98765 PP

>> EF-hand_8  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.0   0.2   5.5e-05     0.071      27      45 ..      68      86 ..      67      90 .. 0.90
   2 !   17.8   0.1   1.7e-06    0.0022       2      54 ..      81     129 ..      80     130 .. 0.89
   3 !    7.0   0.1    0.0042       5.3      28      44 ..     153     169 ..     150     175 .. 0.87
   4 !   10.5   0.0   0.00033      0.43       2      54 ..     165     213 ..     164     214 .. 0.87
   5 !   12.4   0.0   8.3e-05      0.11      22      48 ..     224     250 ..     216     257 .. 0.84
   6 !   11.7   0.0   0.00014      0.17      22      52 ..     258     288 ..     251     291 .. 0.83

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 5.5e-05
   EF-hand_8 27 evdilfrefDtdgdGkisf 45
                e d++f+++Dt+ dG+is 
  KOO23966.1 68 ESDAMFDAIDTNADGVISV 86
                789**************96 PP

  == domain 2  score: 17.8 bits;  conditional E-value: 1.7e-06
   EF-hand_8   2 kgkItreelrrilrilglkkglseeevdilfrefDtdgdGkisfeEFcvller 54 
                 +g+I++ elr+ l+++g    + ee++d lf ++D d++G  s eE  + +++
  KOO23966.1  81 DGVISVVELRTHLSSIG----YAEEAADKLFELIDADENGECSREELRNAFVE 129
                 8**********776666....88******************999999988875 PP

  == domain 3  score: 7.0 bits;  conditional E-value: 0.0042
   EF-hand_8  28 vdilfrefDtdgdGkis 44 
                 +d+ f+++D +gdG++s
  KOO23966.1 153 ADAFFDAVDSNGDGAVS 169
                 7888***********98 PP

  == domain 4  score: 10.5 bits;  conditional E-value: 0.00033
   EF-hand_8   2 kgkItreelrrilrilglkkglseeevdilfrefDtdgdGkisfeEFcvller 54 
                 +g ++++e+r+ ++++g    + + +++  f ++D d++G +s +E  + + r
  KOO23966.1 165 DGAVSPQEMRKHVSSIG----YEPAAAERFFALLDADKSGEVSRNEVREAFLR 213
                 7999*******776666....88***********************9888766 PP

  == domain 5  score: 12.4 bits;  conditional E-value: 8.3e-05
   EF-hand_8  22 glseeevdilfrefDtdgdGkisfeEF 48 
                 gl+ +e+d++f ++D +gdG + + E 
  KOO23966.1 224 GLGTSEADTIFVAIDANGDGNVEQAEL 250
                 3999******************99996 PP

  == domain 6  score: 11.7 bits;  conditional E-value: 0.00014
   EF-hand_8  22 glseeevdilfrefDtdgdGkisfeEFcvll 52 
                 g+ +e++ ++f ++D +gdG is eE  + +
  KOO23966.1 258 GYAAEAAATIFATLDVNGDGLISREELRNGY 288
                 47789999******************87755 PP

>> SPARC_Ca_bdg  Secreted protein acidic and rich in cysteine Ca binding region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.0   0.0   4.4e-06    0.0057      53     109 ..      66     122 ..      48     125 .. 0.87
   2 !   12.7   0.0   9.5e-05      0.12      59     109 ..     156     206 ..     133     209 .. 0.86
   3 !    8.8   0.0    0.0016         2      60     110 ..     234     284 ..     226     287 .. 0.76

  Alignments for each domain:
  == domain 1  score: 17.0 bits;  conditional E-value: 4.4e-06
  SPARC_Ca_bdg  53 kepvawkFsklDtnsdkvlsksELaplraplvklehCikpflescDadkdkkislkE 109
                   + +   +F+ +Dtn d+v+s  EL+   +++   e+  ++++e  Dad++++ s++E
    KOO23966.1  66 HVESDAMFDAIDTNADGVISVVELRTHLSSIGYAEEAADKLFELIDADENGECSREE 122
                   5555679******************99999***********************9998 PP

  == domain 2  score: 12.7 bits;  conditional E-value: 9.5e-05
  SPARC_Ca_bdg  59 kFsklDtnsdkvlsksELaplraplvklehCikpflescDadkdkkislkE 109
                    F+ +D n d+ +s +E+++  +++       ++f+   Dadk +++s++E
    KOO23966.1 156 FFDAVDSNGDGAVSPQEMRKHVSSIGYEPAAAERFFALLDADKSGEVSRNE 206
                   599***************998887776677889***************999 PP

  == domain 3  score: 8.8 bits;  conditional E-value: 0.0016
  SPARC_Ca_bdg  60 FsklDtnsdkvlsksELaplraplvklehCikpflescDadkdkkislkEw 110
                   F  +D n d+ ++++ELa   +      +  ++ + + D++ d+ is++E 
    KOO23966.1 234 FVAIDANGDGNVEQAELALYLSRKGYAAEAAATIFATLDVNGDGLISREEL 284
                   778888999999999988765555566667778888889999998888884 PP

>> Toprim  Toprim domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.6   0.0    0.0034       4.4      51      92 ..      91     132 ..      51     149 .. 0.78
   2 ?    5.9   0.0     0.012        15      47      92 ..     171     216 ..     138     225 .. 0.81
   3 ?    3.1   0.1     0.084   1.1e+02      61      92 ..     228     255 ..     218     266 .. 0.76

  Alignments for each domain:
  == domain 1  score: 7.6 bits;  conditional E-value: 0.0034
                 HHHHHHHHHHHHHSEEEEECSSSHHHHHHHHHHHHHHTHHHT CS
      Toprim  51 kvlkalkelakradeiilatDpDreGeaiawellevlkelle 92 
                 ++l+++    + ad+++ ++D+D+ Ge  + el++++ e+ +
  KOO23966.1  91 THLSSIGYAEEAADKLFELIDADENGECSREELRNAFVEYSQ 132
                 4455566666889********************998876555 PP

  == domain 2  score: 5.9 bits;  conditional E-value: 0.012
                 TTTHHHHHHHHHHHHHHSEEEEECSSSHHHHHHHHHHHHHHTHHHT CS
      Toprim  47 edkkkvlkalkelakradeiilatDpDreGeaiawellevlkelle 92 
                 ++ +k+++++  +   a++ + ++D+D+ Ge  + e++e++ ++ +
  KOO23966.1 171 QEMRKHVSSIGYEPAAAERFFALLDADKSGEVSRNEVREAFLRYED 216
                 556777777888888899999*****************99986665 PP

  == domain 3  score: 3.1 bits;  conditional E-value: 0.084
                 HHHSEEEEECSSSHHHHHHHHHHHHHHTHHHT CS
      Toprim  61 kradeiilatDpDreGeaiawellevlkelle 92 
                 ++ad i++a+D+  +G   + el+     +l+
  KOO23966.1 228 SEADTIFVAIDANGDGNVEQAELAL----YLS 255
                 789*************988888773....333 PP

>> Dockerin_1  Dockerin type I domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.6   0.1      0.12   1.6e+02      32      46 ..      71      85 ..      56      90 .. 0.78
   2 ?    4.0   0.0     0.045        58      32      46 ..     155     169 ..     137     174 .. 0.75
   3 ?   -3.3   0.0       8.7   1.1e+04      37      46 ..     194     203 ..     185     205 .. 0.71
   4 ?    5.3   0.1     0.018        23      36      51 ..     236     251 ..     225     257 .. 0.79
   5 !    8.8   0.7    0.0014       1.8       3      46 ..     238     280 ..     236     284 .. 0.76

  Alignments for each domain:
  == domain 1  score: 2.6 bits;  conditional E-value: 0.12
                CCHGGGSTT-SSCES CS
  Dockerin_1 32 sngkaaDvNgDGrvn 46
                 + +a D N DG ++
  KOO23966.1 71 AMFDAIDTNADGVIS 85
                566788889999887 PP

  == domain 2  score: 4.0 bits;  conditional E-value: 0.045
                 CCHGGGSTT-SSCES CS
  Dockerin_1  32 sngkaaDvNgDGrvn 46 
                    +a D NgDG v+
  KOO23966.1 155 AFFDAVDSNGDGAVS 169
                 556778888888887 PP

  == domain 3  score: -3.3 bits;  conditional E-value: 8.7
                 GSTT-SSCES CS
  Dockerin_1  37 aDvNgDGrvn 46 
                 +D ++ G+v+
  KOO23966.1 194 LDADKSGEVS 203
                 5667777665 PP

  == domain 4  score: 5.3 bits;  conditional E-value: 0.018
                 GGSTT-SSCESHHHHH CS
  Dockerin_1  36 aaDvNgDGrvnalDal 51 
                 a D NgDG+v    ++
  KOO23966.1 236 AIDANGDGNVEQAELA 251
                 6899999999877665 PP

  == domain 5  score: 8.8 bits;  conditional E-value: 0.0014
                 ETTSSSC-SHHHHHHHHHHCTSSEBTTSCCCHGGGSTT-SSCES CS
  Dockerin_1   3 DVNgDgkVnalDalliinylnqregqssssngkaaDvNgDGrvn 46 
                 D NgDg+V    ++l          + + +  +++DvNgDG ++
  KOO23966.1 238 DANGDGNVEQAELALYLSRKG-YAAEAAATIFATLDVNGDGLIS 280
                 889999999888777544444.4678888888999999999887 PP

>> TPR_20  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.1   0.1    0.0003      0.39      13      67 ..      74     130 ..      52     149 .. 0.85
   2 ?    1.4   0.0      0.31     4e+02      35      66 ..     180     213 ..     152     215 .. 0.83
   3 ?    2.5   0.0      0.15   1.9e+02      13      52 ..     235     274 ..     226     294 .. 0.80

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.0003
      TPR_20  13 aalaanpddldarldlAlallaagryeeAleqLleilkrdrkw..eddaarkqllki 67 
                 +a+ +n d +   ++l ++l + g  eeA+++L+e++ +d +   ++++ r++++++
  KOO23966.1  74 DAIDTNADGVISVVELRTHLSSIGYAEEAADKLFELIDADENGecSREELRNAFVEY 130
                 5666777777778888899999*****************998756789999988876 PP

  == domain 2  score: 1.4 bits;  conditional E-value: 0.31
      TPR_20  35 agryeeAleqLleilkrdrkw..eddaarkqllk 66 
                  g + +A+e+++++l +d++   +++++r+++l 
  KOO23966.1 180 IGYEPAAAERFFALLDADKSGevSRNEVREAFLR 213
                 5677899*********999764478888888875 PP

  == domain 3  score: 2.5 bits;  conditional E-value: 0.15
      TPR_20  13 aalaanpddldarldlAlallaagryeeAleqLleilkrd 52 
                  a+ an d +  + +lAl l  +g  +eA++ +++ l  +
  KOO23966.1 235 VAIDANGDGNVEQAELALYLSRKGYAAEAAATIFATLDVN 274
                 56777778888899****************9999988655 PP

>> EF-hand_14  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.2   0.0      0.01        13       2      31 ..      69      98 ..      68     101 .. 0.92
   2 ?    2.9   0.0      0.11   1.4e+02       2      29 ..     103     130 ..     102     149 .. 0.81
   3 ?    0.8   0.0      0.49   6.3e+02       2      30 ..     153     181 ..     152     185 .. 0.92
   4 ?   -2.8   0.0       6.7   8.5e+03       3      25 ..     188     210 ..     182     219 .. 0.76
   5 ?   -1.0   0.0       1.8   2.3e+03       2      30 ..     230     258 ..     229     262 .. 0.89

  Alignments for each domain:
  == domain 1  score: 6.2 bits;  conditional E-value: 0.01
  EF-hand_14  2 edllfdlfkdeetdklsvakllkaLaetGi 31
                +d++fd ++++ ++ +sv +l ++L++ G 
  KOO23966.1 69 SDAMFDAIDTNADGVISVVELRTHLSSIGY 98
                699************************996 PP

  == domain 2  score: 2.9 bits;  conditional E-value: 0.11
  EF-hand_14   2 edllfdlfkdeetdklsvakllkaLaet 29 
                 +d lf+l++ +e++++s ++l +a  e+
  KOO23966.1 103 ADKLFELIDADENGECSREELRNAFVEY 130
                 799***************9999887764 PP

  == domain 3  score: 0.8 bits;  conditional E-value: 0.49
  EF-hand_14   2 edllfdlfkdeetdklsvakllkaLaetG 30 
                 +d+ fd  ++++++ +s +++ k++++ G
  KOO23966.1 153 ADAFFDAVDSNGDGAVSPQEMRKHVSSIG 181
                 6999*******************999988 PP

  == domain 4  score: -2.8 bits;  conditional E-value: 6.7
  EF-hand_14   3 dllfdlfkdeetdklsvakllka 25 
                 +  f l++ ++++++s ++  +a
  KOO23966.1 188 ERFFALLDADKSGEVSRNEVREA 210
                 66788888888888887776554 PP

  == domain 5  score: -1.0 bits;  conditional E-value: 1.8
  EF-hand_14   2 edllfdlfkdeetdklsvakllkaLaetG 30 
                 +d +f  ++ +++++++ a+l   L+ +G
  KOO23966.1 230 ADTIFVAIDANGDGNVEQAELALYLSRKG 258
                 699******9********99999999888 PP

>> EF-hand_9  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.3   0.0    0.0048       6.1       1      43 [.      70     109 ..      70     122 .. 0.78
   2 ?   -3.4   0.1       9.8   1.3e+04       1      15 [.     154     168 ..     154     169 .. 0.82
   3 ?    1.5   0.0      0.31   3.9e+02       1      16 [.     188     203 ..     188     212 .. 0.88
   4 ?    1.6   0.0      0.29   3.7e+02       1      26 [.     231     256 ..     231     275 .. 0.89

  Alignments for each domain:
  == domain 1  score: 7.3 bits;  conditional E-value: 0.0048
   EF-hand_9   1 etvFevcDtqktGrVpvsrlidyLravtaqdpeeseLeelake 43 
                 +++F++ Dt+  G++ v +l + L   +     e + ++l ++
  KOO23966.1  70 DAMFDAIDTNADGVISVVELRTHLSSIGY---AEEAADKLFEL 109
                 689*****************999998887...44444455444 PP

  == domain 2  score: -3.4 bits;  conditional E-value: 9.8
   EF-hand_9   1 etvFevcDtqktGrV 15 
                 ++ F++ D +  G V
  KOO23966.1 154 DAFFDAVDSNGDGAV 168
                 578999999988887 PP

  == domain 3  score: 1.5 bits;  conditional E-value: 0.31
   EF-hand_9   1 etvFevcDtqktGrVp 16 
                 e+ F + D +k G+V 
  KOO23966.1 188 ERFFALLDADKSGEVS 203
                 578***********96 PP

  == domain 4  score: 1.6 bits;  conditional E-value: 0.29
   EF-hand_9   1 etvFevcDtqktGrVpvsrlidyLra 26 
                 +t+F + D +  G+V  ++l  yL  
  KOO23966.1 231 DTIFVAIDANGDGNVEQAELALYLSR 256
                 789**************999999975 PP

>> EF-hand_13  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.0       4.7     6e+03      58      76 ..      72      90 ..      66      93 .. 0.82
   2 ?    2.0   0.0      0.15   1.9e+02      50      78 ..      98     126 ..      94     140 .. 0.88
   3 ?   -0.9   0.0       1.1   1.4e+03      59      77 ..     157     175 ..     148     179 .. 0.82
   4 ?   -0.4   0.0       0.8     1e+03      55      77 ..     187     209 ..     181     213 .. 0.59
   5 ?   -3.5   0.0       7.6   9.7e+03      57      75 ..     232     250 ..     231     251 .. 0.83
   6 ?    5.2   0.0     0.015        19      48      79 ..     257     288 ..     254     295 .. 0.89

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 4.7
  EF-hand_13 58 ifysvnrswsgkitlkelr 76
                +f +++ + +g i++ elr
  KOO23966.1 72 MFDAIDTNADGVISVVELR 90
                6778899999999999998 PP

  == domain 2  score: 2.0 bits;  conditional E-value: 0.15
  EF-hand_13  50 Yietviarifysvnrswsgkitlkelrks 78 
                 Y+e +  ++f  ++  ++g+++ +elr++
  KOO23966.1  98 YAEEAADKLFELIDADENGECSREELRNA 126
                 788888899999999999**999999986 PP

  == domain 3  score: -0.9 bits;  conditional E-value: 1.1
  EF-hand_13  59 fysvnrswsgkitlkelrk 77 
                 f +v+++++g ++ +e+rk
  KOO23966.1 157 FDAVDSNGDGAVSPQEMRK 175
                 5579999999999999998 PP

  == domain 4  score: -0.4 bits;  conditional E-value: 0.8
  EF-hand_13  55 iarifysvnrswsgkitlkelrk 77 
                  +r f  ++  +sg+++ +e+r+
  KOO23966.1 187 AERFFALLDADKSGEVSRNEVRE 209
                 45555556666666666666554 PP

  == domain 5  score: -3.5 bits;  conditional E-value: 7.6
  EF-hand_13  57 rifysvnrswsgkitlkel 75 
                 +if +++ +++g++ + el
  KOO23966.1 232 TIFVAIDANGDGNVEQAEL 250
                 6999999999999988776 PP

  == domain 6  score: 5.2 bits;  conditional E-value: 0.015
  EF-hand_13  48 drYietviarifysvnrswsgkitlkelrksd 79 
                 + Y+  + a+if +++ +++g i+ +elr++ 
  KOO23966.1 257 KGYAAEAAATIFATLDVNGDGLISREELRNGY 288
                 56999999*********************985 PP

>> OAM_dimer  Dimerisation domain of d-ornithine 4,5-aminomutase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.0   0.0      0.11   1.4e+02       7      57 ..      77     128 ..      75     152 .. 0.72
   2 ?    7.8   0.0    0.0035       4.5       7      59 ..     238     291 ..     233     294 .. 0.90

  Alignments for each domain:
  == domain 1  score: 3.0 bits;  conditional E-value: 0.11
                 SSTT--EEEE.EEEESS-SCHHHHHHHHHHHHCTTSEEEEEEEEEEEETTEE CS
   OAM_dimer   7 dtlnDGvvql.sftLPvpaeeeAeeAAlelakkmGledpeVvhkeelheeft 57 
                 dt +DGv+++ ++   ++    AeeAA +l + +  ++   +++eel++ f 
  KOO23966.1  77 DTNADGVISVvELRTHLSSIGYAEEAADKLFELIDADENGECSREELRNAFV 128
                 8999999874267777777789*****9999988888877777777776665 PP

  == domain 2  score: 7.8 bits;  conditional E-value: 0.0035
                 SSTT--EE.EEEEEESS-SCHHHHHHHHHHHHCTTSEEEEEEEEEEEETTEEEE CS
   OAM_dimer   7 dtlnDGvv.qlsftLPvpaeeeAeeAAlelakkmGledpeVvhkeelheeftff 59 
                 d  +DG v q ++ L ++ +  A eAA+ + + + ++    +++eel++++ ++
  KOO23966.1 238 DANGDGNVeQAELALYLSRKGYAAEAAATIFATLDVNGDGLISREELRNGYVRY 291
                 7889**99678999999999***************************9999876 PP

>> Arm-DNA-bind_1  Bacteriophage lambda integrase, Arm DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   0.00027      0.34      26      58 ..     209     241 ..     202     255 .. 0.88

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00027
                     TSEEEEE-TTTS-EEEEESSHHHHHHHHHHHHH CS
  Arm-DNA-bind_1  26 kvYyrYrhPvtgkfhsLGtdereAieeAveaNt 58 
                     + + rY +P  +  ++LGt e++ i  A++aN 
      KOO23966.1 209 EAFLRYEDPALRLALGLGTSEADTIFVAIDANG 241
                     56889***************************5 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (348 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       363  (0.0202465); expected 358.6 (0.02)
Passed bias filter:                      301  (0.0167884); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                        14  (0.000780858); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              14  [number of targets reported over threshold]
# CPU time: 0.47u 0.24s 00:00:00.71 Elapsed: 00:00:00.39
# Mc/sec: 2680.01
//
Query:       KOO23967.1  [L=308]
Description: nodulin 3-like protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.3e-35  121.3  10.5    1.4e-21   76.3   3.6    2.3  2  MtN3_slv  Sugar efflux transporter for intercellular exchange


Domain annotation for each model (and alignments):
>> MtN3_slv  Sugar efflux transporter for intercellular exchange
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.1   0.6   2.4e-17   4.3e-13       2      85 ..      37     123 ..      36     125 .. 0.89
   2 !   76.3   3.6   7.8e-26   1.4e-21       2      79 ..     169     246 ..     168     251 .. 0.97

  Alignments for each domain:
  == domain 1  score: 49.1 bits;  conditional E-value: 2.4e-17
    MtN3_slv   2 llgllcvvftvavFlsPlsilrkiikkksveelsfllflagllsallWllYGllkkda...liiivNlvgvlleliylllflvyakk 85 
                  +g+l+++   ++Fl+P++++r+i+k   + ++s l++l+++l ++lW +Y+l    +      i N+vg+llel y+l+f+ +a +
  KOO23967.1  37 AFGWLGCLAAWGLFLAPMPTMREIMKVGHIGDFSPLPYLVSMLQCFLWAVYALPFITPcktQPLITNIVGFLLELGYILIFVRFAHS 123
                 699*************************************************86544322255678****************99876 PP

  == domain 2  score: 76.3 bits;  conditional E-value: 7.8e-26
    MtN3_slv   2 llgllcvvftvavFlsPlsilrkiikkksveelsfllflagllsallWllYGllkkdaliiivNlvgvlleliylllf 79 
                 +lg++c+v++va+++sPl ++r++i+++sv +++++l++   l++++W++Y+ll++d +i ++N +g+ll +++l+++
  KOO23967.1 169 VLGFACSVLNVAMYGSPLGVVRTVIRTRSVRYMPLPLTIGCGLCSVIWTVYALLVMDFFILVPNALGCLLTVAQLSVY 246
                 79**************************************************************************99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (308 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       636  (0.0354733); expected 358.6 (0.02)
Passed bias filter:                      320  (0.0178482); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.23s 00:00:00.64 Elapsed: 00:00:00.37
# Mc/sec: 2514.13
//
Query:       KOO23968.1  [L=91]
Description: hypothetical protein Ctob_008887 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (91 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       280  (0.0156172); expected 358.6 (0.02)
Passed bias filter:                      141  (0.00786435); expected 358.6 (0.02)
Passed Vit filter:                        12  (0.000669307); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.21s 00:00:00.54 Elapsed: 00:00:00.35
# Mc/sec: 782.06
//
Query:       KOO23969.1  [L=997]
Description: chromatin remodeling factor17 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.1e-71  241.4   0.3    2.2e-71  240.4   0.3    1.5  1  SNF2_N      SNF2 family N-terminal domain
    1.5e-26   92.6   0.0    4.3e-26   91.2   0.0    1.8  1  SLIDE       SLIDE
    5.9e-19   68.5   0.0    1.7e-18   67.0   0.0    1.9  1  Helicase_C  Helicase conserved C-terminal domain
    4.1e-10   39.9   0.0    1.1e-09   38.5   0.0    1.7  1  ResIII      Type III restriction enzyme, res subunit
    2.9e-07   31.2   0.9    2.9e-07   31.2   0.9    2.6  1  HAND        HAND
    8.9e-05   22.3   0.0    0.00024   20.9   0.0    1.8  1  DEAD        DEAD/DEAH box helicase
    0.00024   20.4   0.0    0.00094   18.4   0.0    1.8  1  HDA2-3      Class II histone deacetylase complex subunits 2 a
    0.00079   19.2   0.0     0.0015   18.2   0.0    1.4  1  SWI2_SNF2   SWI2/SNF2 ATPase
     0.0022   18.4   3.5       0.01   16.2   3.5    2.1  1  DBINO       DNA-binding domain
  ------ inclusion threshold ------
       0.11   12.7   0.0       0.35   11.2   0.0    1.9  1  AAA_22      AAA domain
       0.17   11.9   0.0       0.56   10.2   0.0    1.8  1  AAA_14      AAA domain


Domain annotation for each model (and alignments):
>> SNF2_N  SNF2 family N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  240.4   0.3   1.4e-74   2.2e-71      50     349 ..     170     443 ..     158     444 .. 0.89

  Alignments for each domain:
  == domain 1  score: 240.4 bits;  conditional E-value: 1.4e-74
                 HHHHTT--EEE---TTS--HHHHHHHHH...HHTTTS---.......S-EEEE--HHHHHHHHHHHHHH-TTS-EEE--SSHHHH-------------- CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
      SNF2_N  50 eakqsvrGGiLaDemGLGKTvqvlalilaqrakeekdkekkrkdtlagptLivvPaslldqWeneierhvsssalrvlvyggqkkmkkkntkvapklla 148
                 +++++  +GiLaDemGLGKT+q+++l+    + +e++       ++agp+Li+ P+s+l++W ne +r+++s ++  +  +g++k ++   ++  + + 
  KOO23969.1 170 KLHEQGINGILADEMGLGKTLQTISLLG---YLKESR-------QIAGPHLIITPKSTLTNWANECARWCPSLKV--FKLQGDRKNREALCEQYFDAAD 256
                 678999**********************...655554.......577*************************976..666776666777788999999* PP

                 ---EEEE-HHHHHHHT......TTS-S-S-SEEEES-GGGT--TTSHHHHHHHH---S-EEEE-S--SSS-HHHHHHHHHHH-TTTT--HHHHHHHTHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
      SNF2_N 149 dydvvittYdvlsreaelqkkrsvlkqvewkrvvlDEghtlknstskaaeavskLstsnrwiltGTPiqnsledlygLlkfLreepfgekqtfdkllqr 247
                 ++dv++ttY+++ +e+       +++++ wk++++DE+h++kn++sk+a++v+ + t+ r+++tGTP+qn+l++l+++l+fL +++fge  tfd +++ 
  KOO23969.1 257 TFDVCLTTYETVLQEK------AAIQKLVWKYLIIDEAHRIKNEQSKLATVVRLFHTHFRLLITGTPLQNDLHELWAMLNFLLPDVFGEAATFDAWFDI 349
                 *************998......9**************************************************************************** PP

                 HHH....HHHHHHHHHHHTT-STTEE---GGGT--S---EEEEEEEEE--HHHHHHHH....................HHHHHH-HHH-HHHHHHHHHH CS
                 xxx....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
      SNF2_N 248 pie....aqaekgrsrLlqllqrlmlrrakkdveknlPpkteeiiflklskverksYnrllevlrkkalakllkrseaalkssskskekilelllelrq 342
                 + +      a +   +L+++l++++lrr k+dvek+lPpk e  +++ ls+++rk+Y              +l+++   l++  ++k+++l++l++lr+
  KOO23969.1 350 DKAreagGDAVDLLTQLHKILRPFLLRRLKADVEKDLPPKREIKLLIGLSDMQRKWYA------------NILEKNIDVLNAMGANKTRMLNMLMQLRK 436
                 999777667788999*******************************************............3334444444444434466********** PP

                 HHH---X CS
                 xxxxxxx RF
      SNF2_N 343 acnhpql 349
                 + nhp+l
  KOO23969.1 437 CANHPYL 443
                 *****98 PP

>> SLIDE  SLIDE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   91.2   0.0   2.7e-29   4.3e-26       2     113 ..     849     959 ..     848     960 .. 0.96

  Alignments for each domain:
  == domain 1  score: 91.2 bits;  conditional E-value: 2.7e-29
       SLIDE   2 kiikqIekgekkieklkelkellkkkveqyknplqelkikyppsnkgkkeyteeeDrfllvllakyGygnyekikkeiresplFrfDwflksrtpqelq 100
                 k++++I +ge+++ +  el e+l +k+ +++np+  lk+      +  + ++ e Drfll++ +++Gyg++e+++k++r+++  +fDw+l++rt++el+
  KOO23969.1 849 KYMRRICEGEAQLARAAELDEALGRKIRATRNPWLALKVDW-GGPRPFSGFSLEADRFLLCMSYQLGYGKWEELQKKVRQAWSLKFDWWLRTRTQAELE 946
                 9*************************************999.66777777************************************************* PP

       SLIDE 101 kRcetLlklveke 113
                  R+e+L klve e
  KOO23969.1 947 ARVEQLAKLVEAE 959
                 *********9976 PP

>> Helicase_C  Helicase conserved C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.0   0.0     1e-21   1.7e-18       2     111 .]     464     577 ..     463     577 .. 0.90

  Alignments for each domain:
  == domain 1  score: 67.0 bits;  conditional E-value: 1e-21
                 HHHHHHHHH.HHTTTTSEEEEEESSHHHHHHHHHHHHHTTSTEEEESTTSTHHHHHHHHHHHH...TTSSSEEEESGGGTSSSTSTTESEEEESSSSSS CS
  Helicase_C   2 kleallell.kleeeggkilifvntidrlekvklllekkgikvavlhgelpqnereeileqfn...kgesdvLiatdvaerGidipkvnlVinfdlprn 96 
                 k++ l +ll  l++ ++++l+f++ +++l+ ++  +  +g ++++++g+++ ++r+e +++fn   +  + +L++t++++ Gi++  +++Vi fd ++n
  KOO23969.1 464 KMALLDKLLvRLHAGDHRVLLFSQMTRMLDILEDYCAYRGWTYCRIDGSTSGDSRDEQMNAFNapgSPLFLFLLSTRAGGLGINLATADTVILFDSDWN 562
                 66777888789999***************8744445677************************7655668899************************** PP

                 HHHHHHHHTTSSSTT CS
  Helicase_C  97 vtsyiqriGRtgRag 111
                 ++   q+++R++R+g
  KOO23969.1 563 PQMDLQAMDRAHRIG 577
                 *************97 PP

>> ResIII  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.5   0.0   6.8e-13   1.1e-09       3     169 ..     156     317 ..     155     319 .. 0.84

  Alignments for each domain:
  == domain 1  score: 38.5 bits;  conditional E-value: 6.8e-13
                 EE-HHHHHHHHHHT......TTSEEEEEESTTSTHHHHHHHHHHHH-S......-EEEEESSHHHHHHHHHHGGGGTGG....GEEEESSS-B--.... CS
      ResIII   3 elreyQeeaienlleklkskrdkrglikmaTGtGKTlvaaklierllkkgkee.kflflvprkslleqtleefkkflseaykeigkkvsgdkkka.... 96 
                 ++r yQ e ++ l+ kl+ ++  +g+++ + G GKTl  ++l  +l++++++    l++ p+ +l   + +e +++ ++    +  k++gd+k++    
  KOO23969.1 156 KMRAYQLEGLNWLI-KLH-EQGINGILADEMGLGKTLQTISLLGYLKESRQIAgPHLIITPKSTL-TNWANECARWCPSL---KVFKLQGDRKNRealc 248
                 6899****999888.666.8999****************************99666666666665.56888999999887...5778888888887788 PP

                 .........-SEEEEEHHHHHHTH........HHHTTT-SEEEEETGGGTTS..TTTHHHHHT---SEEEEEESS- CS
      ResIII  97 ..kekdstnkkilvttiqsldadseeeeeeseellrdrfdviiiDEaHrlgak.kswreilekfkeavllglTATp 169
                   +  ++++ ++++tt++++ +++          ++   +++iiDEaHr++ + ++   +++ f   ++l +T+Tp
  KOO23969.1 249 eqYFDAADTFDVCLTTYETVLQEK-------AAIQKLVWKYLIIDEAHRIKNEqSKLATVVRLFHTHFRLLITGTP 317
                 777778899999999999999999.......556666778**********997459999****************9 PP

>> HAND  HAND
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.2   0.9   1.8e-10   2.9e-07       4      60 ..     729     785 ..     728     823 .. 0.65

  Alignments for each domain:
  == domain 1  score: 31.2 bits;  conditional E-value: 1.8e-10
                 XXXXXXXXX..X----.--S--------GGC--S--.CCHHHHHHHHHHHHH.HCCT-- CS
        HAND   4 kYYkdvlktgskkstkkpkapraPKqiniqdfqffp.keLkeLqekEqlayk.Kkigyk 60 
                  YY+++l tg+     +  ap++P+q+++ dfqff+ ++L++L +kE   y+ +k  ++
  KOO23969.1 729 AYYRNALDTGKAVD--ARGAPKPPRQVQLADFQFFNlARLEALRQKEWKNYEyRKAHFE 785
                 7********76555..789****************8679*******9543321333333 PP

>> DEAD  DEAD/DEAH box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.9   0.0   1.5e-07   0.00024      12     142 ..     173     298 ..     158     324 .. 0.71

  Alignments for each domain:
  == domain 1  score: 20.9 bits;  conditional E-value: 1.5e-07
                 HTTCEEEEEESTTSSHHHHHHHHHHHHHHHSTTSTS-EEEEEESSHHHHHHHHHHHHHHTTTSTSEEEEEETTSSHHHHHHHH....HTTCSEEEEEHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx....xxxxxxxxxxxx RF
        DEAD  12 lgggdvlvaaeTGsGKTlaflipvlqivyetkgktgpkalivePtreLaeqtlnnlkkfkkyidlrvlliiggvaardqlskl....dngvdivvgtpg 106
                  +g + ++a e G GKTl   i +l  + e  ++ +   li++P   L++  +n++ +++    l+v  + g+ + r+ l +       + d+ ++t +
  KOO23969.1 173 EQGINGILADEMGLGKTLQ-TISLLGYLKE-SRQIAGPHLIITPKSTLTN-WANECARWCPS--LKVFKLQGDRKNREALCEQyfdaADTFDVCLTTYE 266
                 3666889999*******98.7788878877.677777899*******986.67888888886..66776666544444433333432466********* PP

                 HHHHHHHCTSSHCTTE..EEEEEETHHHHHHTTTHHHH CS
                 xxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxx RF
        DEAD 107 rlddllstgklnlsqv..rflVlDEadrlldqgfsdfi 142
                  +++  ++    ++++  ++l++DEa+r+ ++  + ++
  KOO23969.1 267 TVLQ--EKAA--IQKLvwKYLIIDEAHRIKNE--QSKL 298
                 *998..4444..555556***********998..3333 PP

>> HDA2-3  Class II histone deacetylase complex subunits 2 and 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.4   0.0   5.8e-07   0.00094      48     247 ..     424     601 ..     391     635 .. 0.73

  Alignments for each domain:
  == domain 1  score: 18.4 bits;  conditional E-value: 5.8e-07
                 HHHHHHHH.HHHHHHH-GGGT--TT--S-S-STTHHHHHHHT-HHHHHHHHHHHHHTTSS....EEEEEEE-STHHHHHHHHHHTTSSSEEEESSS--S CS
      HDA2-3  48 ikslticlenlslvanHPsLLvdHympkklllkelpeklaetSgKFkvlndlvnliierkrksslnvlvvakskkeldLiEalllGkklkikrysgekl 146
                  +++  +l +l+  anHP+L    +   +       e+l++ SgK+++l +l+  +   +      vl+ ++  + ld++E +   ++ ++ r +g + 
  KOO23969.1 424 KTRMLNMLMQLRKCANHPYL----FEGAETPPFTNDERLIRASGKMALLDKLLVRLHAGD----HRVLLFSQMTRMLDILEDYCAYRGWTYCRIDGSTS 514
                 344555666**********9....5666777777889********************999....99*****************************9876 PP

                 --S---S-..................-SEEEEEEESS---TTTS--TT-S-EEEEEE-SST--TTSHHHHHHH----.------EEEEEETTSHHHHHH CS
      HDA2-3 147 ydekkkkskdtkknsrktkeklkkkihsltihllsttrqltkdksllenikfdliiafDssvdtsspsveslrtqnr.kknklpiirlvpinSieHvkL 244
                  d   ++             +  +   s  +++l +tr         +   +d +i fDs+ +++ +   + r ++  + ++++++r  +  ++e  ++
  KOO23969.1 515 GDSRDEQM------------NAFNAPGSPLFLFLLSTRAGGLG---INLATADTVILFDSDWNPQMDLQAMDRAHRIgQTKPVAVYRFCTEGTVEEKMI 598
                 55555554............12233345566666666665333...44455688888888888887766666665531333477888888888777777 PP

                 HHT CS
      HDA2-3 245 cfk 247
                 ++ 
  KOO23969.1 599 ERA 601
                 766 PP

>> SWI2_SNF2  SWI2/SNF2 ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.2   0.0   9.4e-07    0.0015      18     161 ..     175     321 ..     160     342 .. 0.74

  Alignments for each domain:
  == domain 1  score: 18.2 bits;  conditional E-value: 9.4e-07
   SWI2_SNF2  18 rkgGviWHtqGSGKsltmvflakkllee.elknpkvvvvtDRkdLdkQlsktfaka....geekpkqaesrkeLkell..ekesekiifttiqKfeeee 109
                   +G++    G GK+l+ + l   l+e+ + + p+ +++t ++ L +   + ++ +      + +   ++r+ L e+   ++++ ++++tt +   +e+
  KOO23969.1 175 GINGILADEMGLGKTLQTISLLGYLKESrQIAGPH-LIITPKSTLTNWANECARWCpslkVFKLQGDRKNREALCEQYfdAADTFDVCLTTYETVLQEK 272
                 56788888899999999999999999962555555.678999999999998888886443233445778888888887543458888888888886644 PP

   SWI2_SNF2 110 keklevlsereniivlvDEaHRsqyg.elakklrkalpnaafigFTGTPilkk 161
                 +    ++++    ++++DEaHR + + +  +++ + ++   ++  TGTP++++
  KOO23969.1 273 A----AIQKLVWKYLIIDEAHRIKNEqSKLATVVRLFHTHFRLLITGTPLQND 321
                 4....4444444579*******9887244577889999999*********975 PP

>> DBINO  DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   3.5   6.1e-06      0.01      81     128 ..      36      83 ..      27      88 .. 0.68

  Alignments for each domain:
  == domain 1  score: 16.2 bits;  conditional E-value: 6.1e-06
       DBINO  81 eereerkkaekealekakkeeeereakRqqrkLnFLitQTELYshFis 128
                 e r+er +  k+  e++k+  ++  a+  ++++ +L++Q +++ hF++
  KOO23969.1  36 ERRQERAQVLKKVREEEKRALKASGAEASKQRIAYLMKQADIFTHFVK 83 
                 334444444455555555555555678899****************97 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   0.00021      0.35      74     131 ..     257     317 ..     178     322 .. 0.63

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00021
      AAA_22  74 sseellealeqalrarav.....ielliiDEaqhlr.seealeeLrsllnlsrkgvqliLvGtp 131
                 + + +l++ e  l+++a+      + liiDEa+++  ++  l ++++l+    ++++l++ Gtp
  KOO23969.1 257 TFDVCLTTYETVLQEKAAiqklvWKYLIIDEAHRIKnEQSKLATVVRLFH---THFRLLITGTP 317
                 45555556666666666666677799*********433666666666666...99999999998 PP

>> AAA_14  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.0   0.00034      0.56      52     104 ..     265     320 ..     228     329 .. 0.71

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.00034
      AAA_14  52 llelilek..lkeekktylflDEiqevpewekalkslvdeg.knldvivtGSnskl 104
                 ++++++ek  +++   +yl++DE++++++ ++ l  +v+   +++++++tG  +++
  KOO23969.1 265 YETVLQEKaaIQKLVWKYLIIDEAHRIKNEQSKLATVVRLFhTHFRLLITGTPLQN 320
                 344555554333345589*****************99996656899****986655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (997 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1041  (0.0580624); expected 358.6 (0.02)
Passed bias filter:                      564  (0.0314574); expected 358.6 (0.02)
Passed Vit filter:                        50  (0.00278878); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.76u 0.30s 00:00:01.06 Elapsed: 00:00:00.42
# Mc/sec: 7059.22
//
Query:       KOO23970.1  [L=71]
Description: hypothetical protein Ctob_011530 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    0.00034   20.5   0.0    0.00039   20.3   0.0    1.2  1  ATP11     ATP11 protein


Domain annotation for each model (and alignments):
>> ATP11  ATP11 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.3   0.0   2.2e-08   0.00039     198     242 ..       3      46 ..       1      67 [. 0.77

  Alignments for each domain:
  == domain 1  score: 20.3 bits;  conditional E-value: 2.2e-08
                 EEEE-TTHHHH-EEEEEEEE-TTSS--HHHHHHHHHHHHHHTTGG CS
       ATP11 198 lthytdLaeskglVLmrGevtedrglsveeAqlLvlalqrFYgae 242
                 +  + +L + k +  mr+ev+++r l+ +eA+ L+l ++r+Yg+ 
  KOO23970.1   3 VHLFEELLTAKAIAPMRSEVVPER-LTNAEAEHLLLLVRRYYGTP 46 
                 67799*******************.******************22 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (71 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       270  (0.0150594); expected 358.6 (0.02)
Passed bias filter:                      253  (0.0141112); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.35u 0.24s 00:00:00.59 Elapsed: 00:00:00.39
# Mc/sec: 544.90
//
Query:       KOO23971.1  [L=180]
Description: hypothetical protein Ctob_011535 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
  ------ inclusion threshold ------
       0.13   13.3   0.0       0.31   12.1   0.0    1.6  1  Methyltransf_24  Methyltransferase domain


Domain annotation for each model (and alignments):
>> Methyltransf_24  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   1.7e-05      0.31      85     106 .]       4      25 ..       2      25 .. 0.92

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 1.7e-05
  Methyltransf_24  85 ledleallprlapggvvlfdDi 106
                      +++++a++p+l +ggvv+++D+
       KOO23971.1   4 KRAFDAFEPYLVEGGVVVMHDV 25 
                      7889*****************6 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (180 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       263  (0.014669); expected 358.6 (0.02)
Passed bias filter:                      215  (0.0119917); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.24s 00:00:00.62 Elapsed: 00:00:00.40
# Mc/sec: 1356.89
//
Query:       KOO23972.1  [L=388]
Description: 5 -3 exoribonuclease, partial [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.4e-75  253.9   0.0    1.7e-75  253.6   0.0    1.1  1  XRN_N     XRN 5'-3' exonuclease N-terminus
    5.1e-18   65.3   0.0    6.8e-18   64.8   0.0    1.1  1  XRN_M     Xrn1 helical domain


Domain annotation for each model (and alignments):
>> XRN_N  XRN 5'-3' exonuclease N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  253.6   0.0   1.9e-79   1.7e-75       1     241 [.       1     240 [.       1     241 [. 0.90

  Alignments for each domain:
  == domain 1  score: 253.6 bits;  conditional E-value: 1.9e-79
                 XXX-HHHHHHHHHSGGGEEE---......---.....SSSS-EEEEEEETHHHHHHHHS-SSS-......--SSHHHHHHHHHHHHHHHHHHH-EEEEE CS
       XRN_N   1 mGvpklfrwlserypkivkevie......eee.....eeekefdnLYlDmNgiihkcshkedkeekelskkpkteeeifkkifkyidrlvkivrprkll 88 
                 mGvp+++rwl+++ypk+v+++ie      + e      ++ e+dn+Y+D+N+++h+++h+ d         p  ++  f+++f++ drlv  ++pr+ll
  KOO23972.1   1 MGVPTFYRWLHDHYPKCVTDYIEapasmtD-EtwpenGNGIEVDNFYIDFNQVVHHATHPPD------RPVPPDRAAAFRAVFRAFDRLVLAAKPRRLL 92 
                 9*********************96666551.0555434566*******************43......45888999*********************** PP

                 EEE------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-BB--------GGGSSTTSHHHHHHHHHHHHHHHHHHHH-GGGGG-EEEEE-TT CS
       XRN_N  89 ylavDGvaPraKmnqqRsRRfrsakeakeekeekeelkeelekeekeeeeeeekfdsnvitpGtefmeklsealkafikkklkedpawknlkvilsdae 187
                 ++a DGvaPraKmnqqR+RRf +a+e+  e  +++     + +    + + +e+fd+n+itpGtefm++l +al+++i++++    a+ +l+++lsda 
  KOO23972.1  93 VVAFDGVAPRAKMNQQRARRFLAARERGAELASQS-----AAAIAWGVPPPAEAFDHNAITPGTEFMAELGAALRQHIASRVAAGGAFGSLTIVLSDAA 186
                 *************************9988865322.....233344567899*********************************************** PP

                 S-S-HHHHHHHHHHHHHTSTTS-TT-EEEEE---THHHHHHHHHT-SSEEEEEE CS
       XRN_N 188 vpGEGEhKimefirkqrskpeydpntrhviyglDaDLillsLathepniliLre 241
                 v GEGEhKi  ++r qr++p+ydp+t+h++yglDaDL++++Lathe+++++Lr+
  KOO23972.1 187 VAGEGEHKIAAIVRAQRAQPGYDPSTTHLLYGLDADLVMIGLATHERRFYLLRD 240
                 *****************************************************7 PP

>> XRN_M  Xrn1 helical domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.8   0.0   7.6e-22   6.8e-18       4      83 ..     304     384 ..     302     388 .] 0.89

  Alignments for each domain:
  == domain 1  score: 64.8 bits;  conditional E-value: 7.6e-22
       XRN_M   4 leriiDDfvFlcFFvGNDFLPhlPsLeiregaidlllkvYkkelkklggyltdngevkldrveklvslvgkve.ekifrkr 83 
                  er++DDfv l+F vGNDFLP lP+L+i +g +d  l  Y+++  ++ggyl+ +g+++l +  + +  + +ve  +i + r
  KOO23972.1 304 DERVLDDFVLLTFLVGNDFLPPLPTLTIANGGLDACLDTYRTVRRAIGGYLVREGTLQLRPFRRYLRALVAVEvANISSAR 384
                 69***********************************************************99988887777624565555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (388 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       436  (0.0243181); expected 358.6 (0.02)
Passed bias filter:                      347  (0.0193541); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.46u 0.24s 00:00:00.70 Elapsed: 00:00:00.41
# Mc/sec: 2868.88
//
Query:       KOO23973.1  [L=207]
Description: comm domain-containing protein 10 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    2.2e-06   27.7   0.0    3.1e-06   27.2   0.0    1.2  1  COMM_domain  COMM domain


Domain annotation for each model (and alignments):
>> COMM_domain  COMM domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.2   0.0   1.7e-10   3.1e-06       3      71 ..     127     207 .]     125     207 .] 0.87

  Alignments for each domain:
  == domain 1  score: 27.2 bits;  conditional E-value: 1.7e-10
  COMM_domain   3 qLvdldWrldvqlsssslskvneptalleLklqng............sgnsen....vtlelskeqLqeLlneLeeiqkqlesla 71 
                   L  ldW+l + ++ s+  +++   a+l+L+l+n+            +         v+++l++e +  Ll +L  iq q+++l+
   KOO23973.1 127 SLAGLDWQLRLGTAHSNGGRTPAGHAVLQLELENQvpassasatggvQ----AtrtpVQVQLDAEAMAGLLRKLDVIQGQMDRLS 207
                  57789*****************************98888887766553....14455*************************985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (207 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       480  (0.0267723); expected 358.6 (0.02)
Passed bias filter:                      388  (0.0216409); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.22s 00:00:00.61 Elapsed: 00:00:00.36
# Mc/sec: 1721.36
//
Query:       KOO23974.1  [L=483]
Description: hypothetical protein Ctob_011531 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (483 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       476  (0.0265492); expected 358.6 (0.02)
Passed bias filter:                      338  (0.0188521); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.47u 0.24s 00:00:00.71 Elapsed: 00:00:00.38
# Mc/sec: 3815.51
//
Query:       KOO23975.1  [L=233]
Description: guanine nucleotide binding protein beta subunit 2 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    3.3e-22   78.4   3.6    6.1e-06   26.9   0.1    5.3  5  WD40         WD domain, G-beta repeat
    1.6e-15   57.2   0.0      0.021   15.1   0.0    5.0  5  ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain
      5e-06   25.7   0.7       0.13   11.2   0.0    3.3  4  Ge1_WD40     WD40 region of Ge1, enhancer of mRNA-decapping p
      4e-05   23.6   0.0    8.6e-05   22.5   0.0    1.4  1  eIF2A        Eukaryotic translation initiation factor eIF2A
     0.0008   18.2   0.1          2    7.0   0.0    3.2  3  Nup160       Nucleoporin Nup120/160


Domain annotation for each model (and alignments):
>> WD40  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.4   0.0   3.9e-07    0.0014       9      38 .]      21      50 ..      11      50 .. 0.88
   2 !   26.9   0.1   1.7e-09   6.1e-06       3      38 .]      56      94 ..      54      94 .. 0.87
   3 !   15.7   0.0   5.7e-06      0.02       3      38 .]     100     135 ..      98     135 .. 0.90
   4 !    7.4   0.1    0.0024       8.5      12      38 .]     152     178 ..     142     178 .. 0.83
   5 !    5.8   0.0    0.0076        27      20      35 ..     210     225 ..     180     226 .. 0.71

  Alignments for each domain:
  == domain 1  score: 19.4 bits;  conditional E-value: 3.9e-07
                SSSS.EEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40  9 GHss.vtslafspdgawlasGsdDgtvriWd 38
                GH + +t+laf +d+a+l++++ Dg +r Wd
  KOO23975.1 21 GHEGmITALAFLDDHALLTASG-DGDLRTWD 50
                99557*************9888.*******9 PP

  == domain 2  score: 26.9 bits;  conditional E-value: 1.7e-09
                EEEEEESS.SSEEEEE..EETTSSEEEEEETTSEEEEEE CS
        WD40  3 clrtltGH.ssvtsla..fspdgawlasGsdDgtvriWd 38
                 ++t++GH  +vtsla    + +++ asGs D tvr+Wd
  KOO23975.1 56 SVHTFRGHgRHVTSLAlgPLSQSPLAASGSLDATVRLWD 94
                68******777****977777777789***********9 PP

  == domain 3  score: 15.7 bits;  conditional E-value: 5.7e-06
                 EEEEEESSSSEEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40   3 clrtltGHssvtslafspdgawlasGsdDgtvriWd 38 
                  ++tl + s v+++ f p g ++a+++ Dg vri+d
  KOO23975.1 100 RTHTLPATSEVSGVGFFPGGMLVAAACVDGAVRIFD 135
                 6788988888**************9999******98 PP

  == domain 4  score: 7.4 bits;  conditional E-value: 0.0024
                 SEEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40  12 svtslafspdgawlasGsdDgtvriWd 38 
                 + t+la+s +g+ l + +  g vr+Wd
  KOO23975.1 152 CCTGLAWSLSGRALYTTHTTGQVRVWD 178
                 4699999999999*99999*******9 PP

  == domain 5  score: 5.8 bits;  conditional E-value: 0.0076
                 TTSSE.EEEEETTSEEE CS
        WD40  20 pdgaw.lasGsdDgtvr 35 
                 pdg+  l++++ Dg+vr
  KOO23975.1 210 PDGSAlLIACH-DGSVR 225
                 55555156889.****8 PP

>> ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.5   0.0   1.9e-05     0.068      37      87 ..      22      70 ..      12      75 .. 0.85
   2 !    8.4   0.0   0.00072       2.6      39      86 ..      65     112 ..      61     116 .. 0.73
   3 !   15.1   0.0   5.9e-06     0.021      39      81 ..     108     150 ..     105     154 .. 0.88
   4 !   11.0   0.0   0.00011      0.39      39      79 ..     151     193 ..     146     200 .. 0.82
   5 !    8.1   0.0    0.0009       3.2      40      67 ..     202     229 ..     192     233 .] 0.81

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 1.9e-05
  ANAPC4_WD40 37 edsevrsLaWkpdgklLavaysdgevrlldaesgkvvhslsvksekavtcl 87
                 +++ +++La+  d++ L  a  dg +r  d+esg  vh+++ +   +vt+l
   KOO23975.1 22 HEGMITALAFL-DDHALLTASGDGDLRTWDVESGVSVHTFRGHGR-HVTSL 70
                 56778999985.778889999*******************98876.47776 PP

  == domain 2  score: 8.4 bits;  conditional E-value: 0.00072
  ANAPC4_WD40  39 sevrsLaWkpdgk..lLavaysdgevrlldaesgkvvhslsvksekavtc 86 
                  ++v+sLa  p  +  l a +  d +vrl d+ sg+  h+l+++se  v+ 
   KOO23975.1  65 RHVTSLALGPLSQspLAASGSLDATVRLWDVRSGERTHTLPATSE--VSG 112
                  56666666654332155678889******************9988..665 PP

  == domain 3  score: 15.1 bits;  conditional E-value: 5.9e-06
  ANAPC4_WD40  39 sevrsLaWkpdgklLavaysdgevrlldaesgkvvhslsvkse 81 
                  sev+++ + p g l a a+ dg+vr++d+ ++  v +l++ + 
   KOO23975.1 108 SEVSGVGFFPGGMLVAAACVDGAVRIFDVRHAAAVGELTTPDA 150
                  799****************************999988877655 PP

  == domain 4  score: 11.0 bits;  conditional E-value: 0.00011
  ANAPC4_WD40  39 sevrsLaWkpdgklLavaysdgevrllda..esgkvvhslsvk 79 
                  +  ++LaW+ +g+ L   +  g+vr+ d   +++ ++h+++v 
   KOO23975.1 151 QCCTGLAWSLSGRALYTTHTTGQVRVWDPlgHNAGCIHKIPVV 193
                  56799*********************99533677788887765 PP

  == domain 5  score: 8.1 bits;  conditional E-value: 0.0009
  ANAPC4_WD40  40 evrsLaWkpdgklLavaysdgevrllda 67 
                  e   ++  pdg+ L +a++dg+vr + +
   KOO23975.1 202 ELATIEIAPDGSALLIACHDGSVRAIAM 229
                  55677788***************98866 PP

>> Ge1_WD40  WD40 region of Ge1, enhancer of mRNA-decapping protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.7   0.0     0.057     2e+02     192     217 ..      28      52 ..      19      72 .. 0.62
   2 !   11.2   0.0   3.6e-05      0.13     186     217 ..     106     137 ..      90     145 .. 0.88
   3 ?   -2.4   0.0      0.49   1.7e+03     189     215 ..     152     178 ..     140     190 .. 0.76
   4 !    9.6   0.0   0.00011      0.39     189     212 ..     202     225 ..     192     231 .. 0.84

  Alignments for each domain:
  == domain 1  score: 0.7 bits;  conditional E-value: 0.057
    Ge1_WD40 192 eaafspdGtalatasedGevkffqvy 217
                   af  d  al tas dG ++ + v 
  KOO23975.1  28 ALAF-LDDHALLTASGDGDLRTWDVE 52 
                 3344.355678888888888888763 PP

  == domain 2  score: 11.2 bits;  conditional E-value: 3.6e-05
    Ge1_WD40 186 ehsliveaafspdGtalatasedGevkffqvy 217
                  +s+++   f p G  +a+a+ dG v+ f v 
  KOO23975.1 106 ATSEVSGVGFFPGGMLVAAACVDGAVRIFDVR 137
                 578899999********************985 PP

  == domain 3  score: -2.4 bits;  conditional E-value: 0.49
    Ge1_WD40 189 liveaafspdGtalatasedGevkffq 215
                 + +  a+s  G al t+ + G+v+ + 
  KOO23975.1 152 CCTGLAWSLSGRALYTTHTTGQVRVWD 178
                 566678899999999999999999886 PP

  == domain 4  score: 9.6 bits;  conditional E-value: 0.00011
    Ge1_WD40 189 liveaafspdGtalatasedGevk 212
                 ++ +  ++pdG al +a++dG v+
  KOO23975.1 202 ELATIEIAPDGSALLIACHDGSVR 225
                 67777899**************98 PP

>> eIF2A  Eukaryotic translation initiation factor eIF2A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.5   0.0   2.4e-08   8.6e-05      77     169 ..      82     176 ..      66     178 .. 0.87

  Alignments for each domain:
  == domain 1  score: 22.5 bits;  conditional E-value: 2.4e-08
                 EESSSSCEEEEEECS.CEEEEEEEEES.--EEEE-TTSSEEEEE-TTSSS-EEEEEETT...TTEEEEEEE-TT--EEEE-TTSSEEEEEE-TTT-SS CS
       eIF2A  77 iyGkmpakvslfdlk.vkviskleeqk.rNtiffspkgklvllaGfgnlaGeleiwdvk...kkkkiakaeaanatlvewspdgryvlTattaprlrv 169
                   G  +a+v l+d++ ++ +++l + +    + f p g lv+ a    + G++ i+dv     + ++++ +a+++t + ws +gr + T  t+ ++rv
  KOO23975.1  82 ASGSLDATVRLWDVRsGERTHTLPATSeVSGVGFFPGGMLVAAAC---VDGAVRIFDVRhaaAVGELTTPDAQCCTGLAWSLSGRALYTTHTTGQVRV 176
                 57999*********87999***98765167899******999997...5799*****99666677889999*******************99999887 PP

>> Nup160  Nucleoporin Nup120/160
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.0   0.0   0.00056         2     229     255 ..      33      59 ..      23      66 .. 0.82
   2 !    5.2   0.0    0.0019       6.8     229     255 ..      77     103 ..      62     113 .. 0.81
   3 ?    2.1   0.0     0.016        57     230     250 ..     119     139 ..     102     151 .. 0.78

  Alignments for each domain:
  == domain 1  score: 7.0 bits;  conditional E-value: 0.00056
                 TTTEEEEEETT-EEEEEETTTTEEEEE CS
      Nup160 229 gqtylfalsrdgkLrvWnlltgkclat 255
                 ++  l+++s dg Lr W++++g  + t
  KOO23975.1  33 DDHALLTASGDGDLRTWDVESGVSVHT 59 
                 77889****************998877 PP

  == domain 2  score: 5.2 bits;  conditional E-value: 0.0019
                 TTTEEEEEETT-EEEEEETTTTEEEEE CS
      Nup160 229 gqtylfalsrdgkLrvWnlltgkclat 255
                 ++ ++++ s+d ++r+W++++g ++ t
  KOO23975.1  77 QSPLAASGSLDATVRLWDVRSGERTHT 103
                 566778889************998876 PP

  == domain 3  score: 2.1 bits;  conditional E-value: 0.016
                 TTEEEEEETT-EEEEEETTTT CS
      Nup160 230 qtylfalsrdgkLrvWnlltg 250
                   +++a+++dg +r+ +++ +
  KOO23975.1 119 GMLVAAACVDGAVRIFDVRHA 139
                 56799************9865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (233 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       246  (0.0137208); expected 358.6 (0.02)
Passed bias filter:                      209  (0.0116571); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.44u 0.23s 00:00:00.67 Elapsed: 00:00:00.39
# Mc/sec: 1808.63
//
Query:       KOO23976.1  [L=377]
Description: tetratricopeptide repeat protein 31-like protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.6e-14   52.7  12.2    4.5e-05   23.2   1.4    4.8  4  TPR_2       Tetratricopeptide repeat
    1.8e-12   46.5   2.7    0.00024   20.8   0.5    3.8  3  TPR_1       Tetratricopeptide repeat
    1.7e-11   43.4   1.6      0.022   14.9   0.1    4.4  4  TPR_8       Tetratricopeptide repeat
    3.8e-11   42.9   0.0    8.3e-11   41.9   0.0    1.6  1  DnaJ        DnaJ domain
    9.6e-09   34.8   2.5    4.9e-05   22.9   0.5    2.9  2  TPR_11      TPR repeat
    7.6e-07   29.1   2.4     0.0034   17.6   0.0    3.5  3  TPR_17      Tetratricopeptide repeat
    2.5e-05   24.8   7.7    2.5e-05   24.8   7.7    5.8  5  TPR_16      Tetratricopeptide repeat
     0.0078   16.3   6.2     0.0078   16.3   6.2    4.1  3  TPR_9       Tetratricopeptide repeat
  ------ inclusion threshold ------
      0.011   15.7   5.2        0.3   11.2   0.1    4.2  3  TPR_7       Tetratricopeptide repeat
       0.11   13.3   0.2        0.1   13.5   3.3    6.6  5  TPR_14      Tetratricopeptide repeat
       0.58   10.3   4.6        4.4    7.5   0.1    3.3  3  Fis1_TPR_C  Fis1 C-terminal tetratricopeptide repeat
        3.3    8.1  16.9        2.2    8.6   0.7    4.1  4  TPR_12      Tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> TPR_2  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.1       2.1   3.2e+03      18      27 ..      18      27 ..      17      34 .. 0.76
   2 !   23.2   1.4     3e-08   4.5e-05       2      32 ..     228     258 ..     227     260 .. 0.95
   3 !   19.4   0.1   4.9e-07   0.00074       3      34 .]     263     294 ..     261     294 .. 0.93
   4 !   14.6   0.1   1.8e-05     0.027       3      34 .]     297     328 ..     295     328 .. 0.95

  Alignments for each domain:
  == domain 1  score: -1.3 bits;  conditional E-value: 2.1
       TPR_2 18 eeAleafekA 27
                + A++af+k 
  KOO23976.1 18 DAARAAFRKL 27
                6789999885 PP

  == domain 2  score: 23.2 bits;  conditional E-value: 3e-08
       TPR_2   2 ealynlGlayyklgdyeeAleafekAleldP 32 
                 eal++++ a++ lg+y+ A++a+ +A++ldP
  KOO23976.1 228 EALNAQAVAHFGLGEYAAAAAALSRAIALDP 258
                 89***************************** PP

  == domain 3  score: 19.4 bits;  conditional E-value: 4.9e-07
       TPR_2   3 alynlGlayyklgdyeeAleafekAleldPnn 34 
                 ++ n+ la+++ g+ eeAle+ e+A++ dP++
  KOO23976.1 263 LYGNRSLAHERCGQAEEALEDAERAIRCDPTY 294
                 6889**************************85 PP

  == domain 4  score: 14.6 bits;  conditional E-value: 1.8e-05
       TPR_2   3 alynlGlayyklgdyeeAleafekAleldPnn 34 
                 a+ + G+a++ l + +eAl+a ++ l ldP++
  KOO23976.1 297 AYERKGRALLGLRRSAEALAAVRRGLLLDPEH 328
                 8999**************************86 PP

>> TPR_1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.8   0.5   1.6e-07   0.00024       2      32 ..     228     258 ..     227     260 .. 0.96
   2 !   13.8   0.0   2.5e-05     0.038       4      34 .]     264     294 ..     261     294 .. 0.88
   3 !    9.7   0.0   0.00052      0.78       3      34 .]     297     328 ..     295     328 .. 0.94

  Alignments for each domain:
  == domain 1  score: 20.8 bits;  conditional E-value: 1.6e-07
                 HHHHHHHHHHHHTT-HHHHHHHHHHHHHHST CS
       TPR_1   2 kalynlGnayfklgkydeAleyyekALelnP 32 
                 +al+  ++a+f lg+y  A ++ ++A+ l+P
  KOO23976.1 228 EALNAQAVAHFGLGEYAAAAAALSRAIALDP 258
                 89****************************9 PP

  == domain 2  score: 13.8 bits;  conditional E-value: 2.5e-05
                 HHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH CS
       TPR_1   4 lynlGnayfklgkydeAleyyekALelnPnn 34 
                 + n+ +a+ + g+ +eAle+ e+A++ +P++
  KOO23976.1 264 YGNRSLAHERCGQAEEALEDAERAIRCDPTY 294
                 56666899999******************97 PP

  == domain 3  score: 9.7 bits;  conditional E-value: 0.00052
                 HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH CS
       TPR_1   3 alynlGnayfklgkydeAleyyekALelnPnn 34 
                 a+ ++G a++ l +  eAl++ ++ L l+P++
  KOO23976.1 297 AYERKGRALLGLRRSAEALAAVRRGLLLDPEH 328
                 8999**************************86 PP

>> TPR_8  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.1       3.5   5.2e+03      18      26 ..      18      26 ..      17      28 .. 0.85
   2 !   14.9   0.1   1.5e-05     0.022       2      33 ..     228     259 ..     227     260 .. 0.94
   3 !   12.7   0.0   7.8e-05      0.12       3      33 ..     263     293 ..     261     294 .. 0.92
   4 !   11.8   0.0   0.00015      0.22       2      34 .]     296     328 ..     295     328 .. 0.95

  Alignments for each domain:
  == domain 1  score: -1.8 bits;  conditional E-value: 3.5
                HHHHHHHHH CS
       TPR_8 18 eeAkeyyek 26
                ++A ++++k
  KOO23976.1 18 DAARAAFRK 26
                89*****99 PP

  == domain 2  score: 14.9 bits;  conditional E-value: 1.5e-05
                 CHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH CS
       TPR_8   2 eayynlgsiylklgdyeeAkeyyekaleldpd 33 
                 ea++  + +++ lg+y +A +++ +a+ ldp+
  KOO23976.1 228 EALNAQAVAHFGLGEYAAAAAALSRAIALDPA 259
                 799999************************96 PP

  == domain 3  score: 12.7 bits;  conditional E-value: 7.8e-05
                 HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH CS
       TPR_8   3 ayynlgsiylklgdyeeAkeyyekaleldpd 33 
                 +y n +++++  g+ eeA e  e+a++ dp+
  KOO23976.1 263 LYGNRSLAHERCGQAEEALEDAERAIRCDPT 293
                 799***********************98886 PP

  == domain 4  score: 11.8 bits;  conditional E-value: 0.00015
                 CHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH. CS
       TPR_8   2 eayynlgsiylklgdyeeAkeyyekaleldpdn 34 
                 +ay ++g+++l l +  eA ++ ++ l ldp++
  KOO23976.1 296 PAYERKGRALLGLRRSAEALAAVRRGLLLDPEH 328
                 79*****************************86 PP

>> DnaJ  DnaJ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.9   0.0   5.5e-14   8.3e-11       3      56 ..       6      58 ..       4      63 .. 0.92

  Alignments for each domain:
  == domain 1  score: 41.9 bits;  conditional E-value: 5.5e-14
                HHHHTSSTTG-HHHHHHHHHHHHHHHSTTTSCCHHHHHHHHHHHHHHHHHHTSH CS
        DnaJ  3 YeiLgvskdasedeIkkaYrklalkyHPDknpkdpeaeekFkeineAyevLsdp 56
                Y  Lg+s+ a  d  ++a+rklal++HPDkn  +p+a+ek+  +++Aye    +
  KOO23976.1  6 YRALGLSPGAGLDAARAAFRKLALRLHPDKN-PSPDANEKYLAVAKAYEAILRA 58
                99*****************************.999*************987655 PP

>> TPR_11  TPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.9   0.5   3.3e-08   4.9e-05       5      40 ..     238     273 ..     236     275 .. 0.90
   2 !   11.3   0.0   0.00014      0.21       7      38 ..     274     305 ..     273     308 .. 0.90

  Alignments for each domain:
  == domain 1  score: 22.9 bits;  conditional E-value: 3.3e-08
      TPR_11   5 yeqGkyeeAieaYkkAlkldPdnaeayynLGlayyk 40 
                 + +G+y +A +a+++A++ldP  +++y n+ la+ +
  KOO23976.1 238 FGLGEYAAAAAALSRAIALDPALPSLYGNRSLAHER 273
                 568************************999998876 PP

  == domain 2  score: 11.3 bits;  conditional E-value: 0.00014
      TPR_11   7 qGkyeeAieaYkkAlkldPdnaeayynLGlay 38 
                  G+ eeA+e+ ++A++ dP+++ ay   G a+
  KOO23976.1 274 CGQAEEALEDAERAIRCDPTYVPAYERKGRAL 305
                 6999*********************9988776 PP

>> TPR_17  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.1       2.4   3.6e+03      12      32 ..     226     246 ..     225     247 .. 0.73
   2 !    9.4   0.1   0.00097       1.4       4      34 .]     252     282 ..     249     282 .. 0.94
   3 !   17.6   0.0   2.3e-06    0.0034       3      33 ..     285     315 ..     283     316 .. 0.92

  Alignments for each domain:
  == domain 1  score: -1.2 bits;  conditional E-value: 2.4
      TPR_17  12 nadaynnLAelllknGdlmtA 32 
                 +++a+n  A+++  +G+++ A
  KOO23976.1 226 DVEALNAQAVAHFGLGEYAAA 246
                 678888888888777777665 PP

  == domain 2  score: 9.4 bits;  conditional E-value: 0.00097
      TPR_17   4 kaleldPnnadaynnLAelllknGdlmtArq 34 
                 +a++ldP  + +y n+  ++++ G+ ++A++
  KOO23976.1 252 RAIALDPALPSLYGNRSLAHERCGQAEEALE 282
                 8***************************985 PP

  == domain 3  score: 17.6 bits;  conditional E-value: 2.3e-06
      TPR_17   3 lkaleldPnnadaynnLAelllknGdlmtAr 33 
                 ++a+++dP++++ay  ++++ll + ++++A+
  KOO23976.1 285 ERAIRCDPTYVPAYERKGRALLGLRRSAEAL 315
                 8*********************999999886 PP

>> TPR_16  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.0   0.1      0.98   1.5e+03      51      65 ..      18      33 ..      16      36 .. 0.59
   2 ?    2.0   3.0      0.22   3.3e+02      17      42 ..      49      71 ..      41      71 .. 0.85
   3 ?    0.9   3.6       0.5   7.5e+02      21      58 ..      82     119 ..      81     127 .. 0.71
   4 !   24.8   7.7   1.7e-08   2.5e-05       2      66 ..     232     293 ..     231     295 .. 0.95
   5 ?    5.7   5.4     0.015        23       3      39 ..     301     333 ..     299     348 .. 0.79

  Alignments for each domain:
  == domain 1  score: -0.0 bits;  conditional E-value: 0.98
      TPR_16 51 aeAaalyraal.raap 65
                ++A+a++r+++ r  p
  KOO23976.1 18 DAARAAFRKLAlRLHP 33
                5566777666555555 PP

  == domain 2  score: 2.0 bits;  conditional E-value: 0.22
      TPR_16 17 aaaleaalkrdpssPdaaeAllllgd 42
                a+a+ea l+++    +aaeA  ll+d
  KOO23976.1 49 AKAYEAILRAG---DRAAEADALLAD 71
                79*********...999999888875 PP

  == domain 3  score: 0.9 bits;  conditional E-value: 0.5
      TPR_16  21 eaalkrdpssPdaaeAllllgd..aalrqgrlaeAa.alyr 58 
                  +al+ +   ++++  +l++g+  aa+++g+ aeA  a ++
  KOO23976.1  82 ARALAEG---SVDPSIMLERGRerAAAELGDAAEAPlADFA 119
                 5788888...6666688888853377777888888766555 PP

  == domain 4  score: 24.8 bits;  conditional E-value: 1.7e-08
      TPR_16   2 alaraalragdyddAaaaleaalkrdpssPdaaeAllllgdaalrqgrlaeAaalyraalraapd 66 
                 a+a a++ +g+y++Aaaal +a+++d   P+ +  + ++ +a+ r g  +eA++  ++a+r++p 
  KOO23976.1 232 AQAVAHFGLGEYAAAAAALSRAIALD---PALPSLYGNRSLAHERCGQAEEALEDAERAIRCDPT 293
                 7999**********************...************************9999999**996 PP

  == domain 5  score: 5.7 bits;  conditional E-value: 0.015
      TPR_16   3 laraalragdyddAaaaleaalkrdpssPdaaeAlll 39 
                 ++ra+l +++ ++A+aa ++ l +d   P+ +eAll+
  KOO23976.1 301 KGRALLGLRRSAEALAAVRRGLLLD---PE-HEALLE 333
                 69***********************...86.444443 PP

>> TPR_9  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   2.6       3.6   5.4e+03      27      70 ..      90     134 ..      82     137 .. 0.62
   2 !   16.3   6.2   5.2e-06    0.0078       9      60 ..     241     292 ..     234     306 .. 0.90
   3 !    6.6   0.4    0.0057       8.5       6      28 ..     306     328 ..     301     334 .. 0.85

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 3.6
       TPR_9  27 ddpeerrdRGlllaqlGclsaAladLeaylalap.dapdaeaira 70 
                  dp+  ++RG+ +a  +   aA a L  ++a  + d ++ +a++a
  KOO23976.1  90 VDPSIMLERGRERAAAELGDAAEAPLADFAADLGlDGATLAALMA 134
                 577788888876666666666666677776444445666555555 PP

  == domain 2  score: 16.3 bits;  conditional E-value: 5.2e-06
       TPR_9   9 edweralavverllllaPddpeerrdRGlllaqlGclsaAladLeaylalap 60 
                  ++++a a++ r ++l+P  p+++  R l++++ G+ ++Al+d e++++ +p
  KOO23976.1 241 GEYAAAAAALSRAIALDPALPSLYGNRSLAHERCGQAEEALEDAERAIRCDP 292
                 5789*******************************************99888 PP

  == domain 3  score: 6.6 bits;  conditional E-value: 0.0057
       TPR_9   6 ireedweralavverllllaPdd 28 
                 +  +++++ala+v r lll+P++
  KOO23976.1 306 LGLRRSAEALAAVRRGLLLDPEH 328
                 667899***************98 PP

>> TPR_7  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.1    0.0002       0.3       1      32 [.     229     258 ..     229     262 .. 0.87
   2 ?    3.2   0.1      0.07     1e+02       4      28 ..     266     288 ..     263     296 .. 0.81
   3 ?   -0.3   0.2      0.98   1.5e+03       3      35 ..     299     329 ..     297     330 .. 0.79

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.0002
       TPR_7   1 aLlnLarlysrlGdyeeAielyeqsLaltkdp 32 
                 aL++ a++++ lG+y+ A+  + +  a++ dp
  KOO23976.1 229 ALNAQAVAHFGLGEYAAAAAALSR--AIALDP 258
                 799*********************..666665 PP

  == domain 2  score: 3.2 bits;  conditional E-value: 0.07
       TPR_7   4 nLarlysrlGdyeeAielyeqsLal 28 
                 n   +++r+G+ eeA+e  e+  a+
  KOO23976.1 266 NRSLAHERCGQAEEALEDAER--AI 288
                 56679***********98888..65 PP

  == domain 3  score: -0.3 bits;  conditional E-value: 0.98
       TPR_7   3 lnLarlysrlGdyeeAielyeqsLaltkdpeda 35 
                  + +r+   l++ +eA+   ++  +l  dpe++
  KOO23976.1 299 ERKGRALLGLRRSAEALAAVRR--GLLLDPEHE 329
                 5668888889999999999999..999999875 PP

>> TPR_14  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.5   0.5      0.23   3.5e+02      17      33 ..      17      34 ..       3      48 .. 0.82
   2 ?    0.2   1.0       1.2   1.8e+03      21      42 ..      49      70 ..      41      71 .. 0.71
   3 ?   13.5   3.3   6.9e-05       0.1       2      38 ..     228     264 ..     227     270 .. 0.89
   4 ?   13.3   0.2   7.6e-05      0.11       9      43 ..     269     303 ..     261     304 .. 0.91
   5 ?    9.9   1.8   0.00098       1.5       4      38 ..     298     332 ..     295     335 .. 0.87

  Alignments for each domain:
  == domain 1  score: 2.5 bits;  conditional E-value: 0.23
      TPR_14 17 pdeAiallrr.alalaPd 33
                +d+A+a++r+ al+l+Pd
  KOO23976.1 17 LDAARAAFRKlALRLHPD 34
                799*******77999996 PP

  == domain 2  score: 0.2 bits;  conditional E-value: 1.2
      TPR_14 21 iallrralalaPddaeawllla 42
                +++++++l+++   aea  lla
  KOO23976.1 49 AKAYEAILRAGDRAAEADALLA 70
                5678888887777777777766 PP

  == domain 3  score: 13.5 bits;  conditional E-value: 6.9e-05
      TPR_14   2 eallalaeallalGdpdeAiallrralalaPddaeaw 38 
                 eal a a a++ lG++++A+a+l ra+al+P+ + ++
  KOO23976.1 228 EALNAQAVAHFGLGEYAAAAAALSRAIALDPALPSLY 264
                 7889999************************977665 PP

  == domain 4  score: 13.3 bits;  conditional E-value: 7.6e-05
      TPR_14   9 eallalGdpdeAiallrralalaPddaeawlllaq 43 
                  a+++ G+ +eA++ ++ra++ +P+   a+ + ++
  KOO23976.1 269 LAHERCGQAEEALEDAERAIRCDPTYVPAYERKGR 303
                 689**************************999887 PP

  == domain 5  score: 9.9 bits;  conditional E-value: 0.00098
      TPR_14   4 llalaeallalGdpdeAiallrralalaPddaeaw 38 
                 + + ++all l++ +eA+a+ rr l l+P++++++
  KOO23976.1 298 YERKGRALLGLRRSAEALAAVRRGLLLDPEHEALL 332
                 556799************************88775 PP

>> Fis1_TPR_C  Fis1 C-terminal tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.5   0.1     0.003       4.4       8      32 ..     234     258 ..     230     261 .. 0.93
   2 ?    1.5   0.0      0.21   3.1e+02       8      33 ..     268     293 ..     264     296 .. 0.92
   3 ?    0.5   0.3      0.42   6.3e+02      18      47 ..     312     341 ..     304     345 .. 0.83

  Alignments for each domain:
  == domain 1  score: 7.5 bits;  conditional E-value: 0.003
                 HHHHHHHT-HHHHHHHHHHHHHHTT CS
  Fis1_TPR_C   8 AlGhyklgeYseArryvdalLeiEP 32 
                 A++h+ lgeY  A   + + ++++P
  KOO23976.1 234 AVAHFGLGEYAAAAAALSRAIALDP 258
                 9*************99999999998 PP

  == domain 2  score: 1.5 bits;  conditional E-value: 0.21
                 HHHHHHHT-HHHHHHHHHHHHHHTTS CS
  Fis1_TPR_C   8 AlGhyklgeYseArryvdalLeiEPe 33 
                 +l+h + g+ +eA++ +++ ++++P 
  KOO23976.1 268 SLAHERCGQAEEALEDAERAIRCDPT 293
                 899*******************9995 PP

  == domain 3  score: 0.5 bits;  conditional E-value: 0.42
                 HHHHHHHHHHHHHTTS-HHHHHHHHHHHHH CS
  Fis1_TPR_C  18 seArryvdalLeiEPenrQaqsLkeliedk 47 
                  eA+  v++ L ++Pe +  ++L+e  e++
  KOO23976.1 312 AEALAAVRRGLLLDPEHEALLELEEQAERE 341
                 689999999999999999999999988875 PP

>> TPR_12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.3       3.3   4.9e+03      28      48 ..      50      68 ..      47      70 .. 0.74
   2 ?    8.6   0.7    0.0015       2.2      46      75 ..     228     257 ..     224     259 .. 0.85
   3 ?    7.2   2.8    0.0042       6.3       5      70 ..     263     320 ..     260     327 .. 0.76
   4 ?    0.8   0.4       0.4     6e+02      13      70 ..     298     320 ..     297     337 .. 0.57

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 3.3
      TPR_12 28 kaleiarrllGpdhpltattl 48
                ka+e++ r+  +d++++a +l
  KOO23976.1 50 KAYEAILRA--GDRAAEADAL 68
                788888777..8888888777 PP

  == domain 2  score: 8.6 bits;  conditional E-value: 0.0015
      TPR_12  46 ttlrnLgrlyralgryeeAlelleealaia 75 
                 ++l++ + +++ lg+y++A ++l +a+a++
  KOO23976.1 228 EALNAQAVAHFGLGEYAAAAAALSRAIALD 257
                 689999999999999999999999999986 PP

  == domain 3  score: 7.2 bits;  conditional E-value: 0.0042
      TPR_12   5 alnnlaavlrrlgrydeAlellekaleiarrllGpdhpltattlrnLgrlyralgryeeAlellee 70 
                 ++ n+ +++ r g+ +eAle  e+a++       p+   ++ ++   gr+++ l r +eAl++ ++
  KOO23976.1 263 LYGNRSLAHERCGQAEEALEDAERAIRCD-----PT---YVPAYERKGRALLGLRRSAEALAAVRR 320
                 67789999999*************97665.....54...466777777777777777777776665 PP

  == domain 4  score: 0.8 bits;  conditional E-value: 0.4
      TPR_12  13 lrrlgrydeAlellekaleiarrllGpdhpltattlrnLgrlyralgryeeAlellee 70 
                 + r gr    l+   +al+++                                   ++
  KOO23976.1 298 YERKGRALLGLRRSAEALAAV-----------------------------------RR 320
                 445555555555555555555...................................33 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (377 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       470  (0.0262145); expected 358.6 (0.02)
Passed bias filter:                      312  (0.017402); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                        17  (0.000948185); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.49u 0.22s 00:00:00.71 Elapsed: 00:00:00.40
# Mc/sec: 2833.98
//
Query:       KOO23977.1  [L=551]
Description: gtp-binding protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.2e-10   39.4   0.0    7.3e-09   34.4   0.0    2.6  1  RHD3      Root hair defective 3 GTP-binding protein (RHD3)


Domain annotation for each model (and alignments):
>> RHD3  Root hair defective 3 GTP-binding protein (RHD3)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.4   0.0     4e-13   7.3e-09       9     417 ..      73     455 ..      66     473 .. 0.79

  Alignments for each domain:
  == domain 1  score: 34.4 bits;  conditional E-value: 4e-13
                 HHHHHHHS--------T.TS------SEEEEE-S-EE--SSEEEEEEEE..-BSSSSSSS-CHHHHHHHHHHHHH-SEEEEEEEGGGTTSSTTTTHHHH CS
        RHD3   9 STLLNhLFgTnFsvmda.seRqqTTKGiWlakaknvgksepnilvmDvE..GtDGrERGEDqdFErksALFalavsevlivNiWehqvGlyqgaNmaLL 104
                 S LLN +FgT+F +  +         G Wla + ++    p  lv++       G+ER   +    k   F l+ ++ li+   +  v    +  +   
  KOO23977.1  73 SKLLNAVFGTRFATALQlGPQDPASAGAWLASSPSM----PGCLVLETRplAQVGKERSAADS--CKLTTFCLSLADALIMHSPC--VKPTAALVKETY 163
                 679999999999988884555567889999999997....88999988733467999988776..46778999999999966555..444555555556 PP

                 HHHHHHHHHHHCCSHSS---EEEEEEEESE-SSS-HHHHHHHHHHHHHHHHHHS---GGGTT--HHHHEEEEEEEEE-TTT-HHHHHHHHHHHHHHHTT CS
        RHD3 105 KTVfeVnlrLFlkdkdsdrkvlLlfViRDkvgvTplenLektltedlqkiWdslsKPegleessledfFdvefvaLshkelkeeqFkeevkkLrerfve 203
                   Vf   l   l     d +++L + +RD       +  e +++   +  W+  +   +++   ++d F++ +++++  +   e F++ v+ Lr+ +  
  KOO23977.1 164 ERVFSHHLAAMLSG--GDGRTML-VHVRDPDD----SLPEAAVRAACKDAWSAATAATEFKGKAFSDLFELVLITVPAESDDAEGFEAGVEALRSTLSG 255
                 66666666655444..4666555.45688777....2236788899999*********************************************99876 PP

                 S....--S--GGGS-SS-HHHHHHHHHHHHHHHHTTTTT-HHHHHHHHHHHHHHHHHHHHHHHHHTTTTTTS......SS--SS--HHHHHHHHHHHHH CS
        RHD3 204 skeiengvfkpeyhkriPadgfslyaeqiWdqieeNkDLDLPtqqvlvAqfrcdEianevleefiaaiaeleekqrelkeaaeaglleelgkklaslre 302
                      +g +     +   a+gf+  a++ W+      D   P++  l  ++ +     +  ++f++a + +   qr +k++a++ +++++g + +s+++
  KOO23977.1 256 V----GGRL-----G--KASGFADVAKKAWEASGAIIDQ-QPSEAWLTERYLAGR---SYEAAFAQA-QLVL--QRWSKQVAKGVVVSGFGPEATSMLN 336
                 4....3333.....3..389***********98888874.599999999998764...444556666.3333..577899******************* PP

                 HHHHHHHHHHTTS-HH...HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH.HCT.TTTHHHHHHHH.HHHHHHHHHHHH.HTTSTTTTS CS
        RHD3 303 kaleeydteAsryekg...vyeeKrqeLeekvdsklkalfqavlealrkellekfkeavekalkagedFaesvkek.kkklvekfdeeaeslvveqakw 397
                 +al+ +d+  s    +   +  + r +L++ +++ + +lfq++ ++l++++++ fk ++ k +  g   ae  +e   +++ ++fd  + +l+v ++  
  KOO23977.1 337 TALNTFDAGVSTCSSDaspMIAQFRSRLQKALNNDVTELFQKQRQQLTTSTINRFKGQLLKVMGRGGAVAEWQHEGlRRNAEKHFDAAIGQLMVDGVGD 435
                 *******99887765422278999*******************************************99998877615678899***********9998 PP

                 --.HHHHHHHHHHHHHHHHH CS
        RHD3 398 dasdkiilklekdieaviak 417
                 ++  + ++ + k++++ +ak
  KOO23977.1 436 QTRVQLTTSFGKQLTELTAK 455
                 88889999999999887766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (551 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       464  (0.0258799); expected 358.6 (0.02)
Passed bias filter:                      391  (0.0218082); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.54u 0.30s 00:00:00.84 Elapsed: 00:00:00.42
# Mc/sec: 3934.73
//
Query:       KOO23978.1  [L=327]
Description: hypothetical protein Ctob_003409 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    4.5e-09   36.6   0.0    7.6e-09   35.8   0.0    1.3  1  FAD_binding_6  Oxidoreductase FAD-binding domain
    1.9e-07   31.7   0.1    7.7e-07   29.7   0.0    1.9  2  NAD_binding_1  Oxidoreductase NAD-binding domain
     0.0038   17.3   0.1      0.059   13.5   0.0    2.1  2  NAD_binding_6  Ferric reductase NAD binding domain


Domain annotation for each model (and alignments):
>> FAD_binding_6  Oxidoreductase FAD-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.8   0.0   1.3e-12   7.6e-09      45      96 ..      51     104 ..      41     106 .. 0.88

  Alignments for each domain:
  == domain 1  score: 35.8 bits;  conditional E-value: 1.3e-12
                    CCEEEEEE.BSSTT..ECCEEEEEEE--TT-HHHHHHHCS-TT-EEEEEEEE-S CS
  FAD_binding_6  45 eaviRsYtpissen..ekGelellvkvypgGkmsqaLdelkigdtleikGPlGk 96 
                    e + R Ytp+sse+  e+Gel+ll+k+y +Gk +q+L+  ++g +l ++ P+ +
     KOO23978.1  51 EVIERDYTPLSSEDdlERGELKLLIKIYSNGKATQYLRAQPLGAHLWFSPPKTT 104
                    4577********97689*****************************99999865 PP

>> NAD_binding_1  Oxidoreductase NAD-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.7   0.0   1.3e-10   7.7e-07       1      68 [.     156     230 ..     156     240 .. 0.77
   2 ?   -1.4   0.0      0.59   3.5e+03      92     103 ..     293     304 ..     286     309 .. 0.78

  Alignments for each domain:
  == domain 1  score: 29.7 bits;  conditional E-value: 1.3e-10
                    EEEEGGGGHHHHHHHHHHHHHCT.......TCSEEEEEEEESSGCGSTTHHHHHHHHHHCTT.EEEEEEEESSCTT CS
  NAD_binding_1   1 miagGtGiaPvrsvlraileeak.......dktkvvlvyGnrteedllyreeleelakklpg.rlkvvavvsreea 68 
                    ++agGtGiaP++++l+++               ++++vy +r ++ ll+ eel ++  + p+  l+v+ +v++ +a
     KOO23978.1 156 LVAGGTGIAPMWQILQQAKTGVVasassqlSALPMTIVYSCRADDALLI-EELAAAVDEWPRaLLRVFVTVTDAAA 230
                    79***************9987325789999889*********9988875.66666666666656666666555544 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 0.59
                    TEEEEEECSHHH CS
  NAD_binding_1  92 ethvyvCGppgM 103
                    +  v+vCGp  +
     KOO23978.1 293 GPRVVVCGPASF 304
                    56799***9865 PP

>> NAD_binding_6  Ferric reductase NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.5   0.0   9.9e-06     0.059       2      27 ..     152     177 ..     151     226 .. 0.79
   2 ?    1.8   0.0      0.04   2.4e+02     139     153 ..     296     310 ..     292     313 .. 0.86

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 9.9e-06
                    xxxxxxxxxxxxxxxxxxxxxxxxxx RF
  NAD_binding_6   2 envllvagGiGitpfisilkdllkks 27 
                     +v+lvagG+Gi+p+  il++     
     KOO23978.1 152 ASVVLVAGGTGIAPMWQILQQAKTGV 177
                    68****************99876544 PP

  == domain 2  score: 1.8 bits;  conditional E-value: 0.04
                    xxxxxxxxxxxxxxx RF
  NAD_binding_6 139 vfvCGppklvkevkk 153
                    v+vCGp+++  e++ 
     KOO23978.1 296 VVVCGPASFGSEMAT 310
                    99*******998876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (327 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       383  (0.021362); expected 358.6 (0.02)
Passed bias filter:                      307  (0.0171231); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.41u 0.25s 00:00:00.65 Elapsed: 00:00:00.39
# Mc/sec: 2509.38
//
Query:       KOO23979.1  [L=275]
Description: hypothetical protein Ctob_003408 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    0.00076   18.9   4.5     0.0018   17.7   1.2    2.0  2  FAM76         FAM76 protein
     0.0015   19.1   6.1     0.0015   19.1   6.1    2.0  3  APG6_N        Apg6 coiled-coil region
  ------ inclusion threshold ------
      0.024   15.0   0.3      0.078   13.3   0.0    1.9  2  EF-hand_14    EF-hand domain
      0.063   13.8   3.7       0.16   12.4   1.9    2.3  2  NPV_P10       Nucleopolyhedrovirus P10 protein
       0.12   11.4   1.2       0.15   11.1   1.2    1.2  1  Atg14         Vacuolar sorting 38 and autophagy-related subun
       0.36   11.0   3.2       0.68   10.1   1.9    2.0  2  DUF2730       Protein of unknown function (DUF2730)
       0.41   10.5   7.6       0.81    9.5   7.6    1.5  1  DUF724        Protein of unknown function (DUF724)
       0.82   10.2   4.4       0.59   10.6   1.4    2.0  2  PhoU          PhoU domain
       0.85    9.3   5.8         12    5.6   0.0    2.3  2  PAXX          PAXX, PAralog of XRCC4 and XLF, also called C9o
        1.1    8.1  10.1        1.7    7.5  10.1    1.3  1  Spc7          Spc7 kinetochore protein
        4.5    7.6   8.8        3.2    8.0   6.6    1.9  2  Spc24         Spc24 subunit of Ndc80


Domain annotation for each model (and alignments):
>> FAM76  FAM76 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.9   0.7    0.0044       7.1     205     253 ..      89     137 ..      46     138 .. 0.83
   2 !   17.7   1.2   1.1e-06    0.0018     226     290 ..     131     195 ..     129     205 .. 0.88

  Alignments for each domain:
  == domain 1  score: 5.9 bits;  conditional E-value: 0.0044
       FAM76 205 tskksldsnssdhlvavtqLkeeiaslkkqleqkdqellekdkkitelk 253
                 ++ + + ++  d   +v++Lk ++a l+kql ++ +   +k+k+ ++l+
  KOO23979.1  89 KALDLAAAQDKDAAGEVAELKLKVAALEKQLLEQASGAAAKEKETAKLQ 137
                 3444677788899999***************************999886 PP

  == domain 2  score: 17.7 bits;  conditional E-value: 1.1e-06
       FAM76 226 eeiaslkkqleqkdqellekdkkitelkaellekekelreklkelekeakekieklekkirellk 290
                 +e a+l+ ql+ kd +lle + ++ elk++++ ++  +  +l+e+  e++e+  ++ +    l k
  KOO23979.1 131 KETAKLQSQLAAKDAQLLELESQVEELKSKEVGEDLFVAARLQEQIDEVRETAAAIWADLLPLVK 195
                 57899****************************************99999988777666666665 PP

>> APG6_N  Apg6 coiled-coil region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.1   6.1   9.1e-07    0.0015      36     124 ..      46     159 ..      39     162 .. 0.84
   2 ?   -2.7   0.0         5   8.1e+03      80      90 ..     172     182 ..     169     193 .. 0.44
   3 ?   -3.3   0.0       7.3   1.2e+04      93     113 ..     219     239 ..     206     244 .. 0.76

  Alignments for each domain:
  == domain 1  score: 19.1 bits;  conditional E-value: 9.1e-07
      APG6_N  36 kkekkeeek.........................qdeeleeleeeleklekeeeelleeLkelekereeleaelaaleeelealeeeeerfwreynelq 109
                 k+e+++++                           d+ l+++++ l+   ++ +++  e +el+ + ++le++l ++++ ++a+e+e ++  ++  +++
  KOO23979.1  46 KDEDRKQRPdltaavaappppaappplpkvvlavADKALDKANKALDLAAAQDKDAAGEVAELKLKVAALEKQLLEQASGAAAKEKETAKLQSQLAAKD 144
                 555444433666666667777777777777777778899999********************************************************* PP

      APG6_N 110 lelleleeeldslea 124
                  +llele + + l++
  KOO23979.1 145 AQLLELESQVEELKS 159
                 *********999986 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 5
      APG6_N  80 leaelaaleee 90 
                 l++++ + +e+
  KOO23979.1 172 LQEQIDEVRET 182
                 22333322222 PP

  == domain 3  score: -3.3 bits;  conditional E-value: 7.3
      APG6_N  93 aleeeeerfwreynelqlell 113
                 a ++e + f+ ++ +++l+l+
  KOO23979.1 219 ACDQEAACFFLQRAAHALKLS 239
                 567888888888888888875 PP

>> EF-hand_14  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.1       2.3   3.8e+03      33      49 ..     142     158 ..     109     176 .. 0.62
   2 ?   13.3   0.0   4.8e-05     0.078      19      58 ..     229     268 ..     218     273 .. 0.82

  Alignments for each domain:
  == domain 1  score: -1.7 bits;  conditional E-value: 2.3
  EF-hand_14  33 kdDpRLkellkklkkve 49 
                  +D  L el +++++++
  KOO23979.1 142 AKDAQLLELESQVEELK 158
                 33444444444444444 PP

  == domain 2  score: 13.3 bits;  conditional E-value: 4.8e-05
  EF-hand_14  19 vakllkaLaetGirkdDpRLkellkklkkvekekseaees 58 
                 +++  +aL+ +G+ + DpRL e++  l ++e +  +++++
  KOO23979.1 229 LQRAAHALKLSGVGERDPRLLEIMALLSSAEAQLRDPQQQ 268
                 5566789*********************999987765554 PP

>> NPV_P10  Nucleopolyhedrovirus P10 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   1.9    0.0001      0.16      12      62 ..     104     158 ..     102     160 .. 0.89
   2 ?   -0.2   0.0      0.86   1.4e+03      23      34 ..     172     183 ..     168     196 .. 0.80

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 0.0001
     NPV_P10  12 dikavddkVdalqqqv....ddvqenlpdvtelnekLdaqsaqLaeletkvenIq 62 
                 ++++++ kV al++q+       +++ +++ +l+++L a  aqL ele++ve+ +
  KOO23979.1 104 EVAELKLKVAALEKQLleqaSGAAAKEKETAKLQSQLAAKDAQLLELESQVEELK 158
                 5899999*******99877777788899999********************9986 PP

  == domain 2  score: -0.2 bits;  conditional E-value: 0.86
     NPV_P10  23 lqqqvddvqenl 34 
                 lq+q+d+v+e  
  KOO23979.1 172 LQEQIDEVRETA 183
                 899999998865 PP

>> Atg14  Vacuolar sorting 38 and autophagy-related subunit 14
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   1.2     9e-05      0.15      57     153 ..      86     182 ..      73     233 .. 0.82

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 9e-05
       Atg14  57 qledkiknkkakleelksliadlrerlqelkdklsqlkkeieekkkklaklsdklkkRrsdleslqneleerrkkqiaklqdaikrieqklsslssk 153
                 +++++++  +a+ ++   ++a+l+ +++ l+++l ++ +  ++k k+ akl+++l+ + ++l  l++++ee + k++ + +    r ++++++++ +
  KOO23979.1  86 KANKALDLAAAQDKDAAGEVAELKLKVAALEKQLLEQASGAAAKEKETAKLQSQLAAKDAQLLELESQVEELKSKEVGEDLFVAARLQEQIDEVRET 182
                 45566666666666777789999999999*****************************************999999988777777777776666655 PP

>> DUF2730  Protein of unknown function (DUF2730)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.0         1   1.7e+03      75      92 ..     101     118 ..      87     124 .. 0.70
   2 ?   10.1   1.9   0.00042      0.68      30      66 ..     128     164 ..     118     196 .. 0.75

  Alignments for each domain:
  == domain 1  score: -0.8 bits;  conditional E-value: 1
     DUF2730  75 lrgelkaleaevrqlshq 92 
                   ge+ +l+ +v++l++q
  KOO23979.1 101 AAGEVAELKLKVAALEKQ 118
                 456666666666666665 PP

  == domain 2  score: 10.1 bits;  conditional E-value: 0.00042
     DUF2730  30 akredleklaekveendkrlteletkvenLPtakdle 66 
                 ak ++ +kl+ +++ +d +l ele++ve+L +++  e
  KOO23979.1 128 AKEKETAKLQSQLAAKDAQLLELESQVEELKSKEVGE 164
                 7999**************************8875333 PP

>> DUF724  Protein of unknown function (DUF724)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   7.6    0.0005      0.81     110     187 ..      83     160 ..      74     161 .. 0.89

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 0.0005
      DUF724 110 erkklekkieeeesekrkleeeidelekkilelerqlallkekkeaadkeiarlkseaekleeeledveqeFeavasa 187
                 ++ k++k +  ++++++ +  e++el+ k++ le+ql    +   a++ke a+l+s+ ++ + +l + e+++e+++s+
  KOO23979.1  83 ALDKANKALDLAAAQDKDAAGEVAELKLKVAALEKQLLEQASGAAAKEKETAKLQSQLAAKDAQLLELESQVEELKSK 160
                 566777888888888999999****************9999********************************99875 PP

>> PhoU  PhoU domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   1.4   0.00036      0.59       8      62 ..      83     136 ..      76     145 .. 0.78
   2 ?   -0.4   0.1      0.99   1.6e+03      30      66 ..     147     183 ..     140     191 .. 0.67

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00036
                 HHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGG-SHHH CS
        PhoU   8 veemlddalealeekdtelarevierddeidrlekeiersllealakrqplaedl 62 
                 +++  ++al++ + +d+++a ev e+  ++ +lek++ +++  a+ak+++ a+ l
  KOO23979.1  83 ALDKANKALDLAAAQDKDAAGEVAELKLKVAALEKQLLEQASGAAAKEKETAK-L 136
                 444445666666999*************************7777788888776.4 PP

  == domain 2  score: -0.4 bits;  conditional E-value: 0.99
                 HHHHHHHHHHH.HHHHHHHHHHHHHHHGG-SHHHHHHH CS
        PhoU  30 vierddeidrl.ekeiersllealakrqplaedlrell 66 
                 ++e++ ++++l  ke+ ++l+ a+  +++ +e +re  
  KOO23979.1 147 LLELESQVEELkSKEVGEDLFVAARLQEQIDE-VRETA 183
                 56778888888556777776666655666665.66654 PP

>> PAXX  PAXX, PAralog of XRCC4 and XLF, also called C9orf142
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.0   3.4     0.021        35      95     150 ..      88     139 ..      74     162 .. 0.72
   2 ?    5.6   0.0    0.0071        12      56      92 ..     205     241 ..     178     264 .. 0.82

  Alignments for each domain:
  == domain 1  score: 4.0 bits;  conditional E-value: 0.021
                 -EEEEEEE--HHHHHHHHHHHHHHHHHHHHHHHHHHHTHHT-XXXXXXXXXXXXXX CS
        PAXX  95 aLtleLskledpeaaerlkaLllelAervaqlekrlaaveesavsPrKksqragae 150
                 + +l+L+  +d +aa ++ +L l++A   +ql     + ++ a++ +K++ + +++
  KOO23979.1  88 NKALDLAAAQDKDAAGEVAELKLKVAALEKQL----LEQASGAAAKEKETAKLQSQ 139
                 55899******************988655554....33344444444444444444 PP

  == domain 2  score: 5.6 bits;  conditional E-value: 0.0071
                 TS-TT--SHHHHHHHHHHT-EEEEEETTEEEEEE-SS CS
        PAXX  56 glkstedyalrfraaceqqavsltlqedrasltlsgg 92 
                 +l+  e  ++r ++ac+q+a+   lq    +l+lsg 
  KOO23979.1 205 KLTEKEIGMMRSKVACDQEAACFFLQRAAHALKLSGV 241
                 567777778999**********************983 PP

>> Spc7  Spc7 kinetochore protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.5  10.1     0.001       1.7     172     249 ..      84     160 ..      75     186 .. 0.72

  Alignments for each domain:
  == domain 1  score: 7.5 bits;  conditional E-value: 0.001
        Spc7 172 leeekaeleeeleklqeaaeelesidkeeLeelreelaelkaeieekkkelaelqeqleeleekieelkeqkseleee 249
                 l++  ++l   +++ ++aa e++++ k ++++l ++l e+ +  ++k+ke+a+lq+ql+++++++ el++q +el+++
  KOO23979.1  84 LDKANKALDLAAAQDKDAAGEVAEL-KLKVAALEKQLLEQASGAAAKEKETAKLQSQLAAKDAQLLELESQVEELKSK 160
                 5555555555555555555555543.6778888899999999999999999999999999999999999999998875 PP

>> Spc24  Spc24 subunit of Ndc80
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.3   0.2      0.76   1.2e+03      18      40 ..      96     118 ..      79     124 .. 0.44
   2 ?    8.0   6.6     0.002       3.2       2      48 ..     115     162 ..     114     186 .. 0.82

  Alignments for each domain:
  == domain 1  score: -0.3 bits;  conditional E-value: 0.76
       Spc24  18 selesleselaelkeeleeleee 40 
                 ++ ++   e aelk +++ le++
  KOO23979.1  96 AQDKDAAGEVAELKLKVAALEKQ 118
                 23333333444444444444433 PP

  == domain 2  score: 8.0 bits;  conditional E-value: 0.002
       Spc24   2 ldnekfriakelsdleselesleselaelkeeleeleeesee.keser 48 
                 l++++++ a  +   e+e+ +l+s+la + ++l ele++ ee k++e+
  KOO23979.1 115 LEKQLLEQASGAAAKEKETAKLQSQLAAKDAQLLELESQVEElKSKEV 162
                 788999999999999***********************9999644444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (275 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1237  (0.0689944); expected 358.6 (0.02)
Passed bias filter:                      552  (0.0307881); expected 358.6 (0.02)
Passed Vit filter:                       101  (0.00563333); expected 17.9 (0.001)
Passed Fwd filter:                        15  (0.000836633); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.55u 0.29s 00:00:00.84 Elapsed: 00:00:00.44
# Mc/sec: 1866.21
//
Query:       KOO23980.1  [L=269]
Description: NADH dehydrogenase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.2e-51  173.0   0.6    8.7e-48  161.9   0.1    2.1  2  2Fe-2S_thioredx  Thioredoxin-like [2Fe-2S] ferredoxin


Domain annotation for each model (and alignments):
>> 2Fe-2S_thioredx  Thioredoxin-like [2Fe-2S] ferredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.7   0.0     4e-05      0.71       5      25 ..      55      79 ..      51      94 .. 0.78
   2 !  161.9   0.1   4.8e-52   8.7e-48      23     145 .]     103     225 ..      99     225 .. 0.98

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 4e-05
                     HTTS-....-GGGGHHHHHHHHHHH CS
  2Fe-2S_thioredx  5 iakyp....ekrsaliplLklvQee 25
                     ++kyp     k+sa++p+L++vQ++
       KOO23980.1 55 LSKYPdtlqGKQSAIMPMLWIVQQQ 79
                     6677777779**************9 PP

  == domain 2  score: 161.9 bits;  conditional E-value: 4.8e-52
                      HHHHSS--HHHHHHHHHHHTS-HHHHHHHHTTSSSS-SS---SEEEEEE-SHHHHTTTHHHHHHHHHHHHT--TT-B-TTSSEEEEEES--S-G CS
  2Fe-2S_thioredx  23 QeeegwlpeealeevaellgvppaevyevatFYsmfnlkpvgkyviqvCtttpCalrgseeilealekklgikagettadgkftleeveClGaC 116
                      Q   gw+p +a++++ae+lg ++++vyevatF++m+n+++ gk++iq+C ttpC+++g+ +i++++e +lgikaget++dg +tl+eveClGaC
       KOO23980.1 103 QGSGGWVPIAAMHKIAERLGCTHMDVYEVATFFTMYNREKNGKFHIQLCATTPCMVCGAYDIMHTIEAHLGIKAGETSDDGLWTLTEVECLGAC 196
                      7779****************************************************************************************** PP

                      GGSSEEEESSSSEEES-HHHHHHHHHHHH CS
  2Fe-2S_thioredx 117 anaPvvqindevyedltpekveeileklk 145
                      +naP+vqind ++e+ltpe++ ++l++lk
       KOO23980.1 197 VNAPMVQINDMFFENLTPENTVKLLDNLK 225
                      *************************9985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (269 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       374  (0.0208601); expected 358.6 (0.02)
Passed bias filter:                      347  (0.0193541); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.26s 00:00:00.69 Elapsed: 00:00:00.42
# Mc/sec: 1940.80
//
Query:       KOO23981.1  [L=504]
Description: hypothetical protein Ctob_003415 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
     0.0017   18.3   0.0       0.56   10.2   0.0    3.2  3  FAST_1    FAST kinase-like protein, subdomain 1
  ------ inclusion threshold ------
        0.1   13.1   0.2        0.1   13.1   0.2    5.1  5  HEAT_EZ   HEAT-like repeat
       0.12   12.6   0.1       0.23   11.7   0.1    1.5  1  DUF3886   Protein of unknown function (DUF3886)


Domain annotation for each model (and alignments):
>> FAST_1  FAST kinase-like protein, subdomain 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.2   0.0   9.3e-05      0.56      23      64 ..     110     151 ..     101     156 .. 0.91
   2 !    4.4   0.0    0.0061        37      16      60 ..     140     184 ..     136     187 .. 0.91
   3 !    4.2   0.0    0.0069        41       3      48 ..     204     246 ..     203     266 .. 0.76

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 9.3e-05
      FAST_1  23 klesrlepylsslspeelldavwsLcileqfpeallnkvlsp 64 
                  ++++ e+ l+++s+ ++ ++v+sL +l + + +l+ k+ls 
  KOO23981.1 110 LCAAAAEKALTHFSQRDVASVVYSLGQLRRHDDELMPKLLSR 151
                 6888999********************************985 PP

  == domain 2  score: 4.4 bits;  conditional E-value: 0.0061
      FAST_1  16 naeeFfeklesrlepylsslspeelldavwsLcileqfpeallnk 60 
                 + +e+++kl sr+ +  ss++  e+   ++ L+ l+ +p+ +l +
  KOO23981.1 140 HDDELMPKLLSRVVSDASSFHAIEMMLTAHGLADLQLAPPTALTA 184
                 5689******************9*****************99876 PP

  == domain 3  score: 4.2 bits;  conditional E-value: 0.0069
      FAST_1   3 lLlvfarLNykpenaeeFfeklesrlepylsslspeelldavwsLc 48 
                 lL +fa+L+++ e    + +  +s+l + l++++p+ +  +  +L+
  KOO23981.1 204 LLSSFASLGFHDE---PLVRLAASQLPTLLTDMEPKGISEMFGALA 246
                 799*********9...69999****999999999986655555555 PP

>> HEAT_EZ  HEAT-like repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.1      0.38   2.3e+03       6      15 ..      42      57 ..      39      72 .. 0.60
   2 ?   -1.2   0.0      0.53   3.2e+03      24      35 ..     139     150 ..     128     157 .. 0.60
   3 ?   13.1   0.2   1.7e-05       0.1       7      49 ..     181     224 ..     180     226 .. 0.92
   4 ?   -0.0   0.1      0.23   1.4e+03      10      35 ..     354     379 ..     348     384 .. 0.84
   5 ?    0.0   0.2      0.22   1.3e+03      12      41 ..     430     451 ..     420     458 .. 0.71

  Alignments for each domain:
  == domain 1  score: -0.7 bits;  conditional E-value: 0.38
     HEAT_EZ  6 aAaw.aLGr.....la 15
                aAa  aLGr     +a
  KOO23981.1 42 AAAFyALGRlnrnsAA 57
                3444466665555555 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 0.53
     HEAT_EZ  24 plvpeilpaLla 35 
                  + +e++p Ll+
  KOO23981.1 139 RHDDELMPKLLS 150
                 333467777764 PP

  == domain 3  score: 13.1 bits;  conditional E-value: 1.7e-05
     HEAT_EZ   7 AawaLGrlaggepel.lqplvpeilpaLlalLnddsdeVRaaAa 49 
                 A+ aL+r+a+ + ++  ++++p++l  +++l  +d+++VR aA 
  KOO23981.1 181 ALTALSRAAVPNIDQfGAQELPRLLSSFASLGFHDEPLVRLAAS 224
                 788****999999998888*********************9995 PP

  == domain 4  score: -0.0 bits;  conditional E-value: 0.23
     HEAT_EZ  10 aLGrlaggepellqplvpeilpaLla 35 
                 aL+rl++ ++ + +p++ +i + L+ 
  KOO23981.1 354 ALSRLPSARGAAAPPELVAISARLVE 379
                 99999999999999999999999985 PP

  == domain 5  score: 0.0 bits;  conditional E-value: 0.22
     HEAT_EZ  12 GrlaggepellqplvpeilpaLlalLndds 41 
                 G   ++ p+ l ++++++++a       ++
  KOO23981.1 430 G---VQLPPELVQHLQQLMRAVQ-----PE 451
                 4...6677777788888888776.....55 PP

>> DUF3886  Protein of unknown function (DUF3886)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.1   3.9e-05      0.23       5      51 ..     426     473 ..     424     488 .. 0.82

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 3.9e-05
     DUF3886   5 kvtLkDlLnedvlekLkakkkeLkeeeekrkee.ekarreeerkarek 51 
                 +v+L+ +L +++++ L++  +  ++ee+ r     ++ r+ +r+ r++
  KOO23981.1 426 AVQLGVQLPPELVQHLQQLMRAVQPEEAARMSShAQPDRRATRRMRNE 473
                 689999***********************9765156788888888765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (504 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       551  (0.0307323); expected 358.6 (0.02)
Passed bias filter:                      408  (0.0227564); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.52u 0.27s 00:00:00.79 Elapsed: 00:00:00.42
# Mc/sec: 3570.56
//
Query:       KOO23982.1  [L=805]
Description: glycoside hydrolase family 10 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    8.8e-11   41.5   0.0    1.7e-10   40.6   0.0    1.4  1  Glyco_hydro_10  Glycosyl hydrolase family 10
    1.7e-09   38.1   0.3     0.0023   18.2   0.0    3.4  3  CBM_4_9         Carbohydrate binding domain


Domain annotation for each model (and alignments):
>> Glyco_hydro_10  Glycosyl hydrolase family 10
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.6   0.0   1.9e-14   1.7e-10      98     309 ..     549     741 ..     478     746 .. 0.81

  Alignments for each domain:
  == domain 1  score: 40.6 bits;  conditional E-value: 1.9e-14
                     HHHHHHHHHHHHHHHHHHHTTTTESEEEEEES-B-TTSCSBE-SHHHHHHTTHHHHHHHHHHHHH-TTSEEEEEESSTTST..SHHHHHHHHHHH CS
  Glyco_hydro_10  98 aeeallkrlenhiktvverykgkiyawDVVNEavddnggslresvwyqilGedyiekAFeaAreadpdakLyyNDYnieea..nakrkavvelvk 190
                     +   l++rl++  +  +++++gki  + V          sl +  w + +Ge+    A+++A++adp+a L+  +  +  +    +++a+ +lv 
      KOO23982.1 549 Q--DLKARLHERLARDLAHFRGKIRLYEVWKG-------SLHSRDWIDRCGESLYFDAYRWAQQADPAALLCSSEAAVLTTltLTNAEAYHNLVY 634
                     3..47888888888888888888888888544.......455567******99999*******************99888866788999****** PP

                     HHHHTT----EEEE--EEETTSCHHHHHHHHHHHHHTTTSEEEEEEEEEECETTSSHHHHHHHHHHHHHHHHHHHHHCTTTEEEEEESSSBGGGS CS
  Glyco_hydro_10 191 elkekgvpidgvGiQsHlsvdspsiseieaalkklaalglevaitELDirvkkssseeealeaqakrykelvkallevkekitgvtvWgvtDkys 285
                     +l ++gvpi +v +Q+ +  ++++ s++++ l  l +l l v+itE+ i+  ++        + +++ ++++++  +++ ++ g+++ ++ D+ +
      KOO23982.1 635 RLVDQGVPIKAVCVQAIFE-GEVDASTVKHRLDVLHELRLPVYITEFTISGLDPA-------KHSYELEKFLRIAFSHE-SVAGILLGDLWDRPA 720
                     ***************9765.5567***************************8877.......56677777777777777.777777777777666 PP

                     TTHHHSTTEC--SSB-TTS-B-HH CS
  Glyco_hydro_10 286 Wlsglkkkeeapllfdsnyqpkpa 309
                       +g   k  ++ l+ +n ++kpa
      KOO23982.1 721 SATG---KAITSGLYAANKEAKPA 741
                     5555...55566666666666666 PP

>> CBM_4_9  Carbohydrate binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.1   0.0   4.8e-06     0.043      46     119 ..      27      99 ..       2     110 .. 0.71
   2 !   18.2   0.0   2.6e-07    0.0023       8     131 ..     121     247 ..     114     254 .. 0.81
   3 ?    1.5   0.0     0.036   3.2e+02      67     110 ..     319     364 ..     318     366 .. 0.77

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 4.8e-06
                 S.TTCEEEEEEE.CCS-TT-EEEEEEEEEESSTSEEEEEEEEEESSTTSCTCEEEEEEEEEESTSEEEEEEEEE-S CS
     CBM_4_9  46 e.twdgqaidit.irlekgktYtvsfwvkassgksrtikvkigdtdadganydevadekvelkgewktlegtFtip 119
                 + +w+ ++        +  + Yt+ fw+k++  +  +  v+ +d+da   +y+++    v+l+  w++++    ip
  KOO23982.1  27 QnNWHALLSLPAfLVTDHERMYTLTFWAKGNGNPHPRPQVTFQDEDA---QYAYIDSAYVQLTSFWHQYSVALAIP 99 
                 367777666665344455678************99**********99...455444447999999***99877766 PP

  == domain 2  score: 18.2 bits;  conditional E-value: 2.6e-07
                 TSTTSTTTTSEECSSTCEEEEECGC...SSSSEEEEEESCSS...TTCEEEEEEE.CCS-TT-EEEEEEEEEESSTS...EEEEEEEEEESSTTSCTCE CS
     CBM_4_9   8 tFedgglegWkargkssgkasvdvs...yngtyslkvsgrge...twdgqaidit.irlekgktYtvsfwvkassgk...srtikvkigdtdadganyd 96 
                 +F+d     ++a+  +++ +++ ++   ++g+y +++   +    +w+ q    + +  +  + Y +sfw +a ++     +  kv  +d d+   +y+
  KOO23982.1 121 YFDD-----FQAWPEGEMHVTLQSTqaaHSGRYGVLINVAKRfeqDWHAQVSLKGfTPPDTDHGYIFSFWGRAAADVpggRAMPKVVFQDADD---SYT 211
                 5555.....667777667788888888********9988887879*****999999999**************99999866666777777777...9** PP

                 EEEEEEEEESTSEEEEEEEEE-S.SCSCCEEEEEEE CS
     CBM_4_9  97 evadekvelkgewktlegtFtip.kstdenvelyve 131
                  +++  v l+ +w+ +e + ++p +    +  + ++
  KOO23982.1 212 PLKQVSVPLTSSWQMYEVDISVPkYREGHTIIISFW 247
                 ***9899999***********996666666666555 PP

  == domain 3  score: 1.5 bits;  conditional E-value: 0.036
                 EEEEEEESSTS....EEEEEEEEEESSTTSCTCEEEEEEEEEES.TSEE CS
     CBM_4_9  67 vsfwvkassgk....srtikvkigdtdadganydevadekvelk.gewk 110
                 + fw++a++ k    + +++v+  d ++   ny+e+ +e ++++ ++w+
  KOO23982.1 319 LAFWARAEKMKstdpTPSVTVAFLDLHK---NYEEIGAEMITIPhTDWQ 364
                 5799999999977666777777777777...999999996666669997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (805 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       424  (0.0236488); expected 358.6 (0.02)
Passed bias filter:                      372  (0.0207485); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.63u 0.26s 00:00:00.89 Elapsed: 00:00:00.42
# Mc/sec: 5753.42
//
Query:       KOO23983.1  [L=121]
Description: hypothetical protein Ctob_003417 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (121 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       403  (0.0224776); expected 358.6 (0.02)
Passed bias filter:                      306  (0.0170673); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.22s 00:00:00.57 Elapsed: 00:00:00.37
# Mc/sec: 972.67
//
Query:       KOO23984.1  [L=559]
Description: hypothetical protein Ctob_003410 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.4e-12   44.5   1.0     0.0056   16.6   0.0    3.6  3  LRR_6     Leucine Rich repeat
  ------ inclusion threshold ------
       0.17   11.6   0.1    1.7e+02    2.1   0.0    3.4  3  LRR_8     Leucine rich repeat


Domain annotation for each model (and alignments):
>> LRR_6  Leucine Rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.8   0.1   1.1e-05     0.094       6      23 ..     438     455 ..     437     456 .. 0.90
   2 !   11.5   0.0   2.7e-05      0.24       3      20 ..     464     481 ..     462     485 .. 0.88
   3 !   16.6   0.0   6.2e-07    0.0056       3      23 ..     491     511 ..     490     511 .. 0.95

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 1.1e-05
       LRR_6   6 teLdLsgNdIgDeGaeaL 23 
                 ++L+L gN++gDeG+  L
  KOO23984.1 438 RHLHLDGNGFGDEGVALL 455
                 89************9876 PP

  == domain 2  score: 11.5 bits;  conditional E-value: 2.7e-05
       LRR_6   3 thLteLdLsgNdIgDeGa 20 
                 +hL+ L L++Nd++D  a
  KOO23984.1 464 PHLERLGLRSNDLTDTSA 481
                 8**************865 PP

  == domain 3  score: 16.6 bits;  conditional E-value: 6.2e-07
       LRR_6   3 thLteLdLsgNdIgDeGaeaL 23 
                 ++L+eLdL++N Ig  G++aL
  KOO23984.1 491 RTLRELDLACNAIGERGLTAL 511
                 79****************998 PP

>> LRR_8  Leucine rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.0      0.31   2.7e+03      42      52 ..     123     133 ..     123     136 .. 0.57
   2 ?   -0.4   0.0      0.11   9.9e+02      50      60 ..     436     446 ..     431     447 .. 0.80
   3 ?    2.1   0.0     0.019   1.7e+02       2      13 ..     492     503 ..     491     507 .. 0.73

  Alignments for each domain:
  == domain 1  score: -1.8 bits;  conditional E-value: 0.31
                 GGGGTT--S-. CS
       LRR_8  42 pgafsgLpsLr 52 
                 p++f+g p+L+
  KOO23984.1 123 PDTFEGIPKLK 133
                 45666666665 PP

  == domain 2  score: -0.4 bits;  conditional E-value: 0.11
                 S-.EEE--SS- CS
       LRR_8  50 sLrsLdLsgNr 60 
                 ++r+L+L+gN 
  KOO23984.1 436 AVRHLHLDGNG 446
                 67999999996 PP

  == domain 3  score: 2.1 bits;  conditional E-value: 0.019
                 T-SEEE-TTS-- CS
       LRR_8   2 nLtsLdLsnNrl 13 
                 +L++LdL +N +
  KOO23984.1 492 TLRELDLACNAI 503
                 677888888766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (559 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       277  (0.0154498); expected 358.6 (0.02)
Passed bias filter:                      214  (0.011936); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.50u 0.24s 00:00:00.74 Elapsed: 00:00:00.40
# Mc/sec: 4143.64
//
Query:       KOO23985.1  [L=450]
Description: phosphatidate cytidylyltransferase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    8.9e-54  183.0  18.8    6.9e-53  180.1  18.8    2.0  1  CTP_transf_1  Cytidylyltransferase family


Domain annotation for each model (and alignments):
>> CTP_transf_1  Cytidylyltransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  180.1  18.8   3.9e-57   6.9e-53      27     266 .]      96     405 ..      55     405 .. 0.89

  Alignments for each domain:
  == domain 1  score: 180.1 bits;  conditional E-value: 3.9e-57
                   HHHHHHHHHHHHHHHHTT--SHHHHHHHHH....HHHHHHHHHHTTTSSSHHHHHHHHHHHHHHHHHH---......................HHHH CS
  CTP_transf_1  27 llvavvvilalkElirlvrlkkrekrllll.llslvlllllllflylesliallklvlllvlvllllvlkvl...................kskskk 103
                    +v+++++++++El+++ +  +r+k+++l+ + ++ +++  l+f y++s+    +++l+   ++l l    l                   +s  +k
    KOO23985.1  96 RMVVLIQVAMFRELVNVRYSLRRFKEIPLFrTSQWGWFYACLIFSYGQSFKGPGRAQLIQSQLILSLLPY-LdvvslmlyslllvgtvltlRSGLYK 191
                   47899*********************************************99999988888887777653.33567788888889999998888899 PP

                   HHHHHHHHHHHHHTHHHH.TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCH---....B-S-TTS---BHHHHHHHHHHHHHHHHHHHHHHHC CS
  CTP_transf_1 104 lervilallallyvvlllqslllienikeglllvllllalvvaaDigaYffGklfGkt....kllpkiSPkKTveGfigGlvaavvvglllalvlsk 196
                   +++  la    + v+ ++q++++ +n   gl+++l++++lv+++D++aYf+G+ fG++      l  +SP+KT+eGfigG +++vv+++++  + + 
    KOO23985.1 192 YQMGQLAWTISIVVITVVQVHSFSANVLAGLFWFLFPVSLVICNDSMAYFCGMGFGRKfikrPFLGALSPNKTWEGFIGGGICTVVFAFITPPFYPT 288
                   999988888888888888**************************************98776457899*****************************9 PP

                   TS...............................................---TTSHHHHHHHHHHHHHHHHHHHHHHHHHHT-SSS-S-SSSSS-HH CS
  CTP_transf_1 197 al...............................................alsllhllllslllslvavfGDLveSglKRafgiKDsGkliPGhGGil 246
                   al                                                +++lh+l+l+l++slva+fG++++Sg+KRa++  D++++iPGhGG+ 
    KOO23985.1 289 ALicpceelkllggwvfrhscempstftphvyvlpgwlpgwllpasvtlLPIQLHALVLGLFASLVAPFGGFFASGIKRAYNLDDFASIIPGHGGVY 385
                   99*********************************************************************************************** PP

                   HHHHHHHHHHHHHHHHHHHH CS
  CTP_transf_1 247 DRlDsllfaapvvylllelf 266
                   DR+D++l+++  + +++++f
    KOO23985.1 386 DRVDCQLIMGLATQTYYATF 405
                   ***********999999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (450 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       546  (0.0304535); expected 358.6 (0.02)
Passed bias filter:                      265  (0.0147805); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.50u 0.27s 00:00:00.77 Elapsed: 00:00:00.43
# Mc/sec: 3157.67
//
Query:       KOO23986.1  [L=620]
Description: tpr repeat-containing protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
  ------ inclusion threshold ------
      0.045   12.8   0.0      0.081   12.0   0.0    1.3  1  Abhydrolase_9  Alpha/beta-hydrolase family


Domain annotation for each model (and alignments):
>> Abhydrolase_9  Alpha/beta-hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   4.5e-06     0.081      61     108 ..     207     254 ..     194     257 .. 0.86

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 4.5e-06
  Abhydrolase_9  61 dtAivamQYsylpSwlsflvdkekareagraLfeavyerwkelpedeR 108
                     +A++a Q s lpSwl+++v +++  + +raL + + +++ +  +++R
     KOO23986.1 207 LLAVIASQLSRLPSWLKLFVTSRAEPQITRALSSFIPKELLAYEAKNR 254
                    579*****************************9999988887777776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (620 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       345  (0.0192426); expected 358.6 (0.02)
Passed bias filter:                      324  (0.0180713); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.56u 0.26s 00:00:00.82 Elapsed: 00:00:00.44
# Mc/sec: 4190.44
//
Query:       KOO23987.1  [L=251]
Description: calmodulin-lysine n-methyltransferase-like protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.7e-16   59.0   0.0    5.9e-16   58.7   0.0    1.1  1  Methyltransf_16  Lysine methyltransferase
      1e-06   28.4   0.1    1.8e-06   27.6   0.1    1.3  1  MTS              Methyltransferase small domain
    8.3e-05   22.4   0.0    0.00012   21.9   0.0    1.1  1  Met_10           Met-10+ like-protein
    0.00063   19.2   0.1    0.00078   18.9   0.1    1.1  1  PrmA             Ribosomal protein L11 methyltransferase (Prm
     0.0027   17.5   0.0     0.0052   16.6   0.0    1.5  2  Methyltransf_23  Methyltransferase domain
  ------ inclusion threshold ------
      0.011   16.5   0.2      0.023   15.4   0.2    1.7  1  Methyltransf_25  Methyltransferase domain
      0.042   13.5   0.0      0.057   13.1   0.0    1.2  1  Cons_hypoth95    Conserved hypothetical protein 95


Domain annotation for each model (and alignments):
>> Methyltransf_16  Lysine methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.7   0.0   2.3e-19   5.9e-16      42     159 ..      79     203 ..      57     217 .. 0.82

  Alignments for each domain:
  == domain 1  score: 58.7 bits;  conditional E-value: 2.3e-19
  Methyltransf_16  42 anelsklsvlELGsGtGlvGlavaellpeakviltDlee.llellkknielnkn...alkskvkvevLdWgeelee..dllekeevDlilaaDc 129
                      +++l++++vlE+G+G G  G+a a+ +  a+v+ltD +   +  l++n+eln +     +++v++++L +g  l++  d  +++ +D il aDc
       KOO23987.1  79 RKALAGKHVLEVGAGLGYAGIACAAWTDAASVTLTDGDPiSVAALRRNVELNAEasaFGSTAVEARQLCYGGALYKegDYRNARVFDCILCADC 172
                      57899********************************9977899*******99866556899**********9986225678889********* PP

  Methyltransf_16 130 vYledslelLvkvLkellkkesk.vlvaykk 159
                       Y+     +L ++Lk+ l + +  ++va ++
       KOO23987.1 173 AYDRAFHLPLCTSLKRSLGPLGRgIVVASRR 203
                      ****************999988856655544 PP

>> MTS  Methyltransferase small domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.6   0.1   7.2e-10   1.8e-06      21      81 ..      72     133 ..      62     146 .. 0.85

  Alignments for each domain:
  == domain 1  score: 27.6 bits;  conditional E-value: 7.2e-10
                 HHHHHHCHCC.TCSEEEEET-TTSHHHHHHHHHTTC.EEEEEESBHHHHHHHHHHHHHTTGC CS
         MTS  21 klLletlpke.lsgkvlDlGcGaGvlgaalakespeaevtlvdvdarAlesakenleankle 81 
                 +l+++ l k+ + ++vl +G+G G+ g+a+a+ ++ a+vtl+d d  ++++ ++n+e n+ +
  KOO23987.1  72 HLIVTRLRKAlAGKHVLEVGAGLGYAGIACAAWTDAASVTLTDGDPISVAALRRNVELNAEA 133
                 577788888877778******************************************99843 PP

>> Met_10  Met-10+ like-protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.9   0.0   4.5e-08   0.00012     100     152 ..      83     135 ..      73     152 .. 0.87

  Alignments for each domain:
  == domain 1  score: 21.9 bits;  conditional E-value: 4.5e-08
                 TT-EEEETT-TTTCCHHHCCHHTTSSEEEEEES-HHHHHHHHHHHHHTT-TTC CS
      Met_10 100 egevVvdvfAGiGpfaipiakyskakrvlaidlnPesvkylkeniklNkvekv 152
                  g+ V++v AG G+  i++a +++a  v   d +P sv  l++n++lN  ++ 
  KOO23987.1  83 AGKHVLEVGAGLGYAGIACAAWTDAASVTLTDGDPISVAALRRNVELNAEASA 135
                 6899********************************************86655 PP

>> PrmA  Ribosomal protein L11 methyltransferase (PrmA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.9   0.1     3e-07   0.00078     161     212 ..      83     135 ..      72     169 .. 0.85

  Alignments for each domain:
  == domain 1  score: 18.9 bits;  conditional E-value: 3e-07
        PrmA 161 egeevlDvGtGSGiLaia.aakLgakkvvavDiDevAvkvakeNaelNkveak 212
                 +g++vl vG+G G   ia aa  +a++v+ +D D+++v + ++N+elN  ++ 
  KOO23987.1  83 AGKHVLEVGAGLGYAGIAcAAWTDAASVTLTDGDPISVAALRRNVELNAEASA 135
                 6899*************9456789************************76554 PP

>> Methyltransf_23  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.0       1.9   4.8e+03     103     133 ..      14      40 ..      11      55 .. 0.57
   2 !   16.6   0.0     2e-06    0.0052       9     111 ..      70     192 ..      64     239 .. 0.76

  Alignments for each domain:
  == domain 1  score: -2.8 bits;  conditional E-value: 1.9
  Methyltransf_23 103 rqiatllkpgGylllseplaslkedrllldw 133
                      ++ ++l  + G +ll+++     ed+  +dw
       KOO23987.1  14 KCTRSLHPDTGEVLLRMQPP---EDEQ-QDW 40 
                      55555444448888888632...2222.333 PP

  == domain 2  score: 16.6 bits;  conditional E-value: 2e-06
  Methyltransf_23   9 lsdklerllpklraggrvLdiGcGtGillevlren..gfsvtgvDlspeaveiae.....kakkaqkdqfdeqeaae..............pqg 81 
                      l++++   l k  ag+ vL++G+G G+    ++++   +svt+ D +p+ v+ ++     +a  + + ++ + ea++              +++
       KOO23987.1  70 LAHLIVTRLRKALAGKHVLEVGAGLGYAGIACAAWtdAASVTLTDGDPISVAALRrnvelNAEASAFGST-AVEARQlcyggalykegdyrNAR 162
                      5555655556678899************99999994445**********999999999997777777777.44444456666666666666888 PP

  Methyltransf_23  82 kfdlIvlrevlehvpdppellrqiatllkp 111
                       fd+I + ++ +    +  l +++++ l p
       KOO23987.1 163 VFDCILCADCAYDRAFHLPLCTSLKRSLGP 192
                      *****9999877766666666666666666 PP

>> Methyltransf_25  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.4   0.2   8.9e-06     0.023       1      46 [.      87     131 ..      87     194 .. 0.72

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 8.9e-06
                      EEEET-TTSHHHHHHHCTSTSSEEEEEESSHHHHHHHHHHHHHTTT CS
  Methyltransf_25   1 vLdlGcGtGrltlalakrlgkakvtgvDiseemleaareraeeegl 46 
                      vL++G+G G   +a+a+   +a+vt +D ++  ++a r+++e + +
       KOO23987.1  87 VLEVGAGLGYAGIACAAWTDAASVTLTDGDPISVAALRRNVELN-A 131
                      9***************99889******************99642.2 PP

>> Cons_hypoth95  Conserved hypothetical protein 95
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.0   2.2e-05     0.057      35      88 ..      77     131 ..      60     167 .. 0.83

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 2.2e-05
                    HHCCCHCC-EEEETT-TTSHHHHHHHH.TT-SEEEEEES-HHHHHHHHHHHCCCT CS
  Cons_hypoth95  35 ilaaeiegarvLDlfaGsGalglEAlS.Rgakkavlvekdkeavkilkenleelk 88 
                     l++++ g++vL++ aG G  g+ ++   +a++++l + d+  v++l++n+e   
     KOO23987.1  77 RLRKALAGKHVLEVGAGLGYAGIACAAwTDAASVTLTDGDPISVAALRRNVELNA 131
                    578889****************98665279*********************8655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (251 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       420  (0.0234257); expected 358.6 (0.02)
Passed bias filter:                      367  (0.0204696); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.45u 0.24s 00:00:00.69 Elapsed: 00:00:00.40
# Mc/sec: 1861.75
//
Query:       KOO23988.1  [L=484]
Description: hypothetical protein Ctob_007449 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (484 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2854  (0.159183); expected 358.6 (0.02)
Passed bias filter:                      506  (0.0282224); expected 358.6 (0.02)
Passed Vit filter:                       141  (0.00786435); expected 17.9 (0.001)
Passed Fwd filter:                        61  (0.00340231); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 1.67u 0.37s 00:00:02.04 Elapsed: 00:00:00.59
# Mc/sec: 2463.28
//
Query:       KOO23989.1  [L=2068]
Description: vacuolar protein 8 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    4.3e-31  106.0  92.8     0.0007   19.5   0.0   26.0 28  Arm             Armadillo/beta-catenin-like repeat
     0.0013   18.3   0.0         43    3.5   0.0    6.4  7  Arm_2           Armadillo-like
     0.0042   15.7   8.6        1.3    7.5   0.0    5.6  5  Adaptin_N       Adaptin N terminal region
  ------ inclusion threshold ------
       0.06   12.9   0.9        1.5    8.3   0.0    3.6  4  CLASP_N         CLASP N terminal
        3.5    6.0  14.7       0.74    8.2   0.0    5.5  6  Proteasom_PSMB  Proteasome non-ATPase 26S subunit


Domain annotation for each model (and alignments):
>> Arm  Armadillo/beta-catenin-like repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.0      0.47   1.7e+03       5      40 ..     210     245 ..     206     246 .. 0.85
   2 !    4.7   0.1    0.0094        34       2      37 ..     249     288 ..     248     291 .. 0.92
   3 !   15.2   0.1   4.5e-06     0.016       2      26 ..     295     319 ..     294     333 .. 0.88
   4 ?    4.6   0.0      0.01        36       2      22 ..     337     357 ..     336     380 .. 0.84
   5 ?    0.3   0.3      0.23   8.2e+02       5      33 ..     436     465 ..     433     467 .. 0.78
   6 ?    3.0   0.1     0.032   1.1e+02       2      40 ..     496     532 ..     495     533 .. 0.90
   7 !    8.9   0.1   0.00044       1.6       8      40 ..     587     619 ..     585     620 .. 0.90
   8 ?    2.9   0.0     0.034   1.2e+02       8      22 ..     628     642 ..     623     647 .. 0.81
   9 !    9.5   0.0    0.0003       1.1       7      37 ..     710     740 ..     707     743 .. 0.82
  10 ?   -0.1   0.1      0.31   1.1e+03       8      40 ..     835     867 ..     834     868 .. 0.91
  11 ?   -1.7   0.0      0.97   3.5e+03      11      23 ..     921     933 ..     917     951 .. 0.65
  12 ?    4.4   0.1     0.011        40       2      40 ..     953     991 ..     952     992 .. 0.90
  13 !    7.3   0.3    0.0014       5.1       8      40 ..    1000    1032 ..     998    1033 .. 0.95
  14 !    9.8   0.0   0.00024      0.85       6      32 ..    1038    1064 ..    1034    1072 .. 0.87
  15 !    7.3   0.5    0.0014       4.9      13      36 ..    1087    1111 ..    1078    1112 .. 0.90
  16 !    9.8   0.3   0.00024      0.85      12      40 ..    1127    1155 ..    1127    1156 .. 0.96
  17 !    5.5   0.1    0.0054        19       7      26 ..    1245    1264 ..    1240    1265 .. 0.83
  18 ?   -3.2   0.0       2.8     1e+04       6      22 ..    1297    1313 ..    1295    1327 .. 0.72
  19 ?   -3.8   0.0       4.4   1.6e+04       3      19 ..    1378    1394 ..    1377    1394 .. 0.84
  20 !    5.1   0.2    0.0067        24       7      40 ..    1423    1456 ..    1419    1457 .. 0.89
  21 ?    1.6   0.1     0.085   3.1e+02      11      24 ..    1468    1481 ..    1464    1497 .. 0.81
  22 ?   -0.3   0.1      0.34   1.2e+03       5      36 ..    1503    1536 ..    1500    1537 .. 0.87
  23 !   15.0   0.1   5.4e-06     0.019      11      38 ..    1551    1578 ..    1544    1581 .. 0.90
  24 !   19.5   0.0     2e-07    0.0007       2      39 ..    1706    1743 ..    1706    1745 .. 0.94
  25 ?    4.3   0.0     0.012        44       3      40 ..    1789    1828 ..    1787    1829 .. 0.93
  26 !    7.8   0.3     0.001       3.6       8      40 ..    1837    1869 ..    1835    1870 .. 0.91
  27 !    6.4   0.0    0.0027       9.7       8      40 ..    1908    1941 ..    1902    1942 .. 0.77
  28 ?   -2.1   0.1       1.3   4.6e+03      25      37 ..    2028    2040 ..    2020    2040 .. 0.85

  Alignments for each domain:
  == domain 1  score: -0.7 bits;  conditional E-value: 0.47
                 HHHHHHTTHHHHHHHHTTTSSHHHHHHHHHHHHHHT CS
         Arm   5 kdavieaGavppLvrLLssedeevqeeAawALsNLa 40 
                  +av+  G++ p v+  s ++ + +e+A++ L+ +a
  KOO23989.1 210 AEAVVTEGGILPMVEVASRGSMKAKEQAVAVLRRMA 245
                 678999999999999999999999999999999887 PP

  == domain 2  score: 4.7 bits;  conditional E-value: 0.0094
                 HHHHHHHHHTTHHHHHHHHTT....TSSHHHHHHHHHHHH CS
         Arm   2 senkdavieaGavppLvrLLs....sedeevqeeAawALs 37 
                  e++ av +aG++ p v+ +        ++++ eA++AL+
  KOO23989.1 249 AEHRAAVSRAGGLAPIVKVIVggttAATPQLRSEACTALA 288
                 6899****************99999999999999999995 PP

  == domain 3  score: 15.2 bits;  conditional E-value: 4.5e-06
                 HHHHHHHHHTTHHHHHHHHTTTSSH CS
         Arm   2 senkdavieaGavppLvrLLssede 26 
                 + n  a+ +aG +p+Lv+LL+s+++
  KOO23989.1 295 PANQSAIADAGTIPALVKLLTSQHD 319
                 57999****************9876 PP

  == domain 4  score: 4.6 bits;  conditional E-value: 0.01
                 HHHHHHHHHTTHHHHHHHHTT CS
         Arm   2 senkdavieaGavppLvrLLs 22 
                 ++n+ +v+++G++  L +LL 
  KOO23989.1 337 EKNCALVVSHGGIALLASLLM 357
                 5799***************97 PP

  == domain 5  score: 0.3 bits;  conditional E-value: 0.23
                 HHHHHHTTHHHHHHHHTT.TSSHHHHHHHH CS
         Arm   5 kdavieaGavppLvrLLs.sedeevqeeAa 33 
                 k +v ++  +  Lv LL+ +  + vq +A+
  KOO23989.1 436 KGTVAQCSLIALLVLLLEtDARDVVQADAV 465
                 66899*************776666666665 PP

  == domain 6  score: 3.0 bits;  conditional E-value: 0.032
                 HHHHHHHHHTTHHHHHHHHTTTSSHHHHHHHHHHHHHHT CS
         Arm   2 senkdavieaGavppLvrLLssedeevqeeAawALsNLa 40 
                 s+ +da+ ++  +  Lv  L+s++   +e A++ L +La
  KOO23989.1 496 SQGRDAILKH--IHKLVGQLKSTNLAALEHALALLDHLA 532
                 78899*****..*******************99887776 PP

  == domain 7  score: 8.9 bits;  conditional E-value: 0.00044
                 HHHTTHHHHHHHHTTTSSHHHHHHHHHHHHHHT CS
         Arm   8 vieaGavppLvrLLssedeevqeeAawALsNLa 40 
                 ++ aGav+pLv+ L+++ e+ +e Aa+AL  L+
  KOO23989.1 587 LVGAGAVQPLVSVLRDGAEDDRELAAAALVQLT 619
                 688**************9999999999998887 PP

  == domain 8  score: 2.9 bits;  conditional E-value: 0.034
                 HHHTTHHHHHHHHTT CS
         Arm   8 vieaGavppLvrLLs 22 
                   +aG+vp Lv+ L 
  KOO23989.1 628 AADAGIVPLLVSQLV 642
                 679********9986 PP

  == domain 9  score: 9.5 bits;  conditional E-value: 0.0003
                 HHHHTTHHHHHHHHTTTSSHHHHHHHHHHHH CS
         Arm   7 avieaGavppLvrLLssedeevqeeAawALs 37 
                 ++i  G+v++L++LL+s++++ +  +++ALs
  KOO23989.1 710 EIIAVGGVEALLELLRSGSTSALYCSTRALS 740
                 7999*************99987766666665 PP

  == domain 10  score: -0.1 bits;  conditional E-value: 0.31
                 HHHTTHHHHHHHHTTTSSHHHHHHHHHHHHHHT CS
         Arm   8 vieaGavppLvrLLssedeevqeeAawALsNLa 40 
                 ++++G v  Lv+  +s+ ++ +++A+  L+ La
  KOO23989.1 835 LVDCGSVGSLVAAARSGTPRARRDATLLLARLA 867
                 79***********************98888776 PP

  == domain 11  score: -1.7 bits;  conditional E-value: 0.97
                 TTHHHHHHHHTT.T CS
         Arm  11 aGavppLvrLLs.s 23 
                 + +v+ Lv+LL   
  KOO23989.1 921 S-GVESLVELLAsR 933
                 4.8999*****944 PP

  == domain 12  score: 4.4 bits;  conditional E-value: 0.011
                 HHHHHHHHHTTHHHHHHHHTTTSSHHHHHHHHHHHHHHT CS
         Arm   2 senkdavieaGavppLvrLLssedeevqeeAawALsNLa 40 
                 s+ ++ + ++Ga  pLvrL    d+ v+ +A++ L+ La
  KOO23989.1 953 SDGRRILGRLGAPLPLVRLAVGSDPAVRAAAVCILCDLA 991
                 677889999***********************9998776 PP

  == domain 13  score: 7.3 bits;  conditional E-value: 0.0014
                  HHHTTHHHHHHHHTTTSSHHHHHHHHHHHHHHT CS
         Arm    8 vieaGavppLvrLLssedeevqeeAawALsNLa 40  
                  +ieaGa+ +  r L+s  ++ qe+A++AL+ L+
  KOO23989.1 1000 LIEAGAIAVIARQLRSAVVDEQEAATAALAQLS 1032
                  79***************************9997 PP

  == domain 14  score: 9.8 bits;  conditional E-value: 0.00024
                  HHHHHTTHHHHHHHHTTTSSHHHHHHH CS
         Arm    6 davieaGavppLvrLLssedeevqeeA 32  
                  +a ++ Ga++pL++LL+ ++++ q+ A
  KOO23989.1 1038 EAAVRDGALEPLLSLLQGGSVRAQKHA 1064
                  67899***************9999988 PP

  == domain 15  score: 7.3 bits;  conditional E-value: 0.0014
                  HHHHHHHHTT.TSSHHHHHHHHHHH CS
         Arm   13 avppLvrLLs.sedeevqeeAawAL 36  
                  av p ++ L+ s d ev+e+Aa  L
  KOO23989.1 1087 AVAPCIQALQqSSDAEVREQAAVVL 1111
                  8999******************998 PP

  == domain 16  score: 9.8 bits;  conditional E-value: 0.00024
                  THHHHHHHHTTTSSHHHHHHHHHHHHHHT CS
         Arm   12 GavppLvrLLssedeevqeeAawALsNLa 40  
                  G++ pLv+LL+++  + +  Aa+A++ La
  KOO23989.1 1127 GGLAPLVELLKCDAASARAKAARAIASLA 1155
                  89***********************9998 PP

  == domain 17  score: 5.5 bits;  conditional E-value: 0.0054
                  HHHHTTHHHHHHHHTTTSSH CS
         Arm    7 avieaGavppLvrLLssede 26  
                  ++++ G+vppLv+L + +d+
  KOO23989.1 1245 TLVQGGGVPPLVALATVPDP 1264
                  56777*********998875 PP

  == domain 18  score: -3.2 bits;  conditional E-value: 2.8
                  HHHHHTTHHHHHHHHTT CS
         Arm    6 davieaGavppLvrLLs 22  
                  dav ++Ga ++L++  +
  KOO23989.1 1297 DAVARQGATEVLLEAVQ 1313
                  89999999999987665 PP

  == domain 19  score: -3.8 bits;  conditional E-value: 4.4
                  HHHHHHHHTTHHHHHHH CS
         Arm    3 enkdavieaGavppLvr 19  
                  + + av  +G++ p vr
  KOO23989.1 1378 DGRVAVSASGGIAPIVR 1394
                  67889999****99986 PP

  == domain 20  score: 5.1 bits;  conditional E-value: 0.0067
                  HHHHTTHHHHHHHHTTTSSHHHHHHHHHHHHHHT CS
         Arm    7 avieaGavppLvrLLssedeevqeeAawALsNLa 40  
                  ++++ Gav pLv+ L+ +    qe+A+ AL+ L 
  KOO23989.1 1423 LLVRDGAVTPLVAQLREGGAAEQEPAVEALAQLV 1456
                  6899************999999999999998875 PP

  == domain 21  score: 1.6 bits;  conditional E-value: 0.085
                  TTHHHHHHHHTTTS CS
         Arm   11 aGavppLvrLLsse 24  
                   G++ pLv+LL + 
  KOO23989.1 1468 EGILAPLVNLLLDS 1481
                  79*********843 PP

  == domain 22  score: -0.3 bits;  conditional E-value: 0.34
                  HHHHH.HTTHHHHHHHHTT.TSSHHHHHHHHHHH CS
         Arm    5 kdavi.eaGavppLvrLLs.sedeevqeeAawAL 36  
                  k av  e ++v + v+ L+ s d  ++e++a+ L
  KOO23989.1 1503 KSAVAsEPNVVCACVERLQrSSDMVIREQSAAVL 1536
                  566666899*********************9988 PP

  == domain 23  score: 15.0 bits;  conditional E-value: 5.4e-06
                  TTHHHHHHHHTTTSSHHHHHHHHHHHHH CS
         Arm   11 aGavppLvrLLssedeevqeeAawALsN 38  
                   G+v++Lv+LL+s+d + q +Aa+A++ 
  KOO23989.1 1551 VGGVEALVELLRSGDGSAQAQAARAICS 1578
                  59***********************975 PP

  == domain 24  score: 19.5 bits;  conditional E-value: 2e-07
                  HHHHHHHHHTTHHHHHHHHTTTSSHHHHHHHHHHHHHH CS
         Arm    2 senkdavieaGavppLvrLLssedeevqeeAawALsNL 39  
                  +++++av ++Gav++Lv+ L ++ +e+++ A++AL+ L
  KOO23989.1 1706 PPHTEAVASSGAVEILVDALMCGGPELVRTATTALARL 1743
                  57899******************************977 PP

  == domain 25  score: 4.3 bits;  conditional E-value: 0.012
                  HHHHHHHHTTHHHHHHHHTT..TSSHHHHHHHHHHHHHHT CS
         Arm    3 enkdavieaGavppLvrLLs..sedeevqeeAawALsNLa 40  
                  + + a+ +a++  +Lv+L +  ++d++ +  A++ L+ La
  KOO23989.1 1789 DGRAAIGKANGAAQLVALATrpDGDPTGKMTATRILCELA 1828
                  6799******************************999997 PP

  == domain 26  score: 7.8 bits;  conditional E-value: 0.001
                  HHHTTHHHHHHHHTTTSSHHHHHHHHHHHHHHT CS
         Arm    8 vieaGavppLvrLLssedeevqeeAawALsNLa 40  
                  +i+a+a  pLv   ++++ ++qe+A++AL+ L+
  KOO23989.1 1837 LIKANAAVPLVVAVRDGSADLQEAAVAALRLLT 1869
                  68899999*********************9776 PP

  == domain 27  score: 6.4 bits;  conditional E-value: 0.0027
                  HHHTTHHHHHHHHTT.TSSHHHHHHHHHHHHHHT CS
         Arm    8 vieaGavppLvrLLs.sedeevqeeAawALsNLa 40  
                   + aG+v pLvr+L+ +e +  +  A  AL NLa
  KOO23989.1 1908 AVTAGVVAPLVRMLQyHEGPVARAHAMHALHNLA 1941
                  5679***********9887777666666666666 PP

  == domain 28  score: -2.1 bits;  conditional E-value: 1.3
                  SHHHHHHHHHHHH CS
         Arm   25 deevqeeAawALs 37  
                   +++ eeAa++L+
  KOO23989.1 2028 PTSLAEEAAGTLR 2040
                  57889******97 PP

>> Arm_2  Armadillo-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.0       1.1     4e+03      47      80 ..     211     243 ..     208     253 .. 0.76
   2 ?    0.1   0.0      0.13   4.6e+02      41      87 ..     292     338 ..     272     356 .. 0.75
   3 ?   -0.3   0.0      0.16   5.9e+02      52     149 ..     630     730 ..     628     749 .. 0.73
   4 ?    1.1   0.0     0.064   2.3e+02     122     166 ..     909     954 ..     894     963 .. 0.85
   5 ?    3.5   0.0     0.012        43      19      84 ..     969    1034 ..     966    1043 .. 0.88
   6 ?    1.8   0.0     0.037   1.3e+02      17      99 ..    1091    1172 ..    1073    1258 .. 0.71
   7 ?   -1.3   0.0      0.34   1.2e+03     139     188 ..    1639    1687 ..    1634    1691 .. 0.85

  Alignments for each domain:
  == domain 1  score: -3.0 bits;  conditional E-value: 1.1
       Arm_2  47 qdiirdlggitiianllsksnaevkekalnalnn 80 
                 ++++ + g++++++ + s+ + + ke+a+ +l  
  KOO23989.1 211 EAVVTEGGILPMVE-VASRGSMKAKEQAVAVLRR 243
                 56788889999997.5688899999999988864 PP

  == domain 2  score: 0.1 bits;  conditional E-value: 0.13
       Arm_2  41 aaysvnqdiirdlggitiianllsksnaevkekalnalnnlsenven 87 
                 +  ++nq  i d g i+ + +ll ++   +   a +al +ls ++e+
  KOO23989.1 292 KGQPANQSAIADAGTIPALVKLLTSQHDGEPLAAASALCALSAGHEK 338
                 55688888889999888888888888777777777777777777665 PP

  == domain 3  score: -0.3 bits;  conditional E-value: 0.16
       Arm_2  52 dlggiti.ianllsksnaev.kekalnalnnlsenvenqkkikvyvnqv..ckdivssplNsevQlagLklltnlsvtneyqhll.vsyisellsLLsk 145
                 d g++++ + +l+ ++  +v + +a++++ n ++ +e  k++ +  + v  c +++ ++  +  Q a  ++l  ls    +  ++ v  ++ ll+LL +
  KOO23989.1 630 DAGIVPLlVSQLVDEETDRVwRARAMQTMFNVAHVAESLKSVTSEPRAVaaCVQTMECSTDCREQAA--TVLATLSEAGRQSEIIaVGGVEALLELLRS 726
                 5678876245566555444415999999999999999999998876666336777777777777766..678999977666665515789999999999 PP

       Arm_2 146 Gnek 149
                 G+  
  KOO23989.1 727 GSTS 730
                 9875 PP

  == domain 4  score: 1.1 bits;  conditional E-value: 0.064
       Arm_2 122 lsvtneyqhllvsyisellsLLs.kGnekikvqvLkvllnlseNpa 166
                 ++v   y  +l s ++ l++LL+ + +e ik +vL +l  ls+  +
  KOO23989.1 909 VTVPAGYTTILNSGVESLVELLAsRAGEDIKGHVLGILQYLSATSD 954
                 58889999*************96257899**********9998665 PP

  == domain 5  score: 3.5 bits;  conditional E-value: 0.012
       Arm_2   19 alLkssedpliqeialltlgnsaaysvnqdiirdlggitiianllsksnaevkekalnalnnlsen 84  
                   +L   +dp++  +a  +l+  a  s +   + + g i++ia  l +    ++e a  al +ls +
  KOO23989.1  969 VRLAVGSDPAVRAAAVCILCDLAKESTAFSNLIEAGAIAVIARQLRSAVVDEQEAATAALAQLSGA 1034
                  5688899**************99999998888899*********************9999999865 PP

  == domain 6  score: 1.8 bits;  conditional E-value: 0.037
       Arm_2   17 llalLkssedpliqeialltlgnsaaysvnqdiirdlggitiianllsksnaevkekalnalnnlsenvenqkkikvyvnqvc 99  
                   ++ L++s+d  + e+a ++l+  a      dii   g  ++++ ll   +a+ + ka  a+  l++  + +  +++ + +++
  KOO23989.1 1091 CIQALQQSSDAEVREQAAVVLTCVADGGWRADIILGGGLAPLVE-LLKCDAASARAKAARAIASLATDPRSHAGLQAALARLV 1172
                  56778888888888888888888888888888888888788776.56666777777777777777777776666666665555 PP

  == domain 7  score: -1.3 bits;  conditional E-value: 0.34
       Arm_2  139 llsLLskGnekikvqvLkvllnlseNpamtrellsakvlssllslfnkke 188 
                  ll+ L +G++  ++   + l  ls  + ++r++++ ++  s+++l n++e
  KOO23989.1 1639 LLRHL-SGSRTEQLIAVRSLRQLSTQQPALRTIVEGNGVPSIVALANSYE 1687
                  55555.4999999999999**************************99987 PP

>> Adaptin_N  Adaptin N terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    3.0   0.0    0.0085        30     126     241 ..     275     433 ..     260     536 .. 0.56
   2 !    7.5   0.0   0.00036       1.3     213     312 ..     699     799 ..     590     802 .. 0.79
   3 !    3.2   0.2    0.0074        26     165     274 ..     976    1097 ..     967    1115 .. 0.69
   4 ?    0.9   0.0     0.037   1.3e+02     229     295 ..    1509    1580 ..    1448    1591 .. 0.72
   5 ?    0.0   0.1     0.067   2.4e+02     263     302 ..    1631    1667 ..    1615    1671 .. 0.83

  Alignments for each domain:
  == domain 1  score: 3.0 bits;  conditional E-value: 0.0085
                 SSHHHHHHHHHHHHHCCCC...CHHCCCCC.HHHHHHHCTT-SSHHHHHHHHHHHHHH.HCCCCCCC..HHHHHHHCCHHHHHHCS-HHHHHHHHHHHC CS
   Adaptin_N 126 rspyvrkkAalailklykk...dpdllrkq.lveeikellsdkdpgvvlaAvalleei.kkndrlll..kllpklvrrLcnllteldpwlqvkiikllt 217
                  +p++r++A +a++ l k    +++++ +   ++ +++ll++++ g  laA ++l+ +    ++ ++   + +  +  L  l  ++  ++ ++++ + t
  KOO23989.1 275 ATPQLRSEACTALAWLSKGqpaNQSAIADAgTIPALVKLLTSQHDGEPLAAASALCALsA-GHEKNCalVVSHGGIALLASL-LMPHVFAATRVLPTAT 371
                 567999999999999988755577888899999999999999999999999999999952.333334324455555555544.5555555555555555 PP

                 C---SSHHHH........................................HHHHHHHCGGCG CS
   Adaptin_N 218 rlarqepeer...................................sk...kellesllnllq 241
                 +  + +   +                                   +    +ell+sll  +q
  KOO23989.1 372 NEQALDALHTillgergggqvhvepeaataatkalrtvvatlpdqDGsfhAELLTSLLGVVQ 433
                 55555544445555555555555555555555555555444444311233566666666666 PP

  == domain 2  score: 7.5 bits;  conditional E-value: 0.00036
                 HHHHCC---SSHHHH..HHHHHHHCGGCGCSSCHHHHHHHHHCCHCCCCST...HHHCCHHCHHHHHHSSCCTCHHHHHCHHHHHHHHXXTTTTTTTCC CS
   Adaptin_N 213 iklltrlarqepeerskkellesllnllqssnnaVlletvnlivelapkne...livlavnaLvrllsskdenlryvaLrtllkivkkepkavqhldlk 308
                 + +l++  rq +  +     +e ll+ll+s +++ l+ + +++ ++a++++   ++ +  n++ +l ++  +  + +aL  l+k++ +  + vq+l   
  KOO23989.1 699 LATLSEAGRQSEIIA--VGGVEALLELLRSGSTSALYCSTRALSSVANDASshaALGADLNVFLELAETDGQQGQSMALAILHKLCNSYDSRVQSLLAS 795
                 445555555555555..3468999***********************99998887888899999999999999****************9999987777 PP

                 CCSX CS
   Adaptin_N 309 ifll 312
                 +f+l
  KOO23989.1 796 SFSL 799
                 7665 PP

  == domain 3  score: 3.2 bits;  conditional E-value: 0.0074
                  SHHHHHHHHHHHHHHHCCCCCCC.....HHHHHHHCCHHHHHHCS-HHHHHHHHHHHCC---SSHHHH..HHHHHHHCGGCG.......CSSCHHHH CS
   Adaptin_N  165 dpgvvlaAvalleeikkndrlll.....kllpklvrrLcnllteldpwlqvkiiklltrlarqepeerskkellesllnllq.......ssnnaVll 249 
                  dp v +aAv +l+ + k+  +++      ++  ++r+L+ ++ +  + + + + +l  +  + e + r  +  le ll+llq       + ++  l+
  KOO23989.1  976 DPAVRAAAVCILCDLAKESTAFSnlieaGAIAVIARQLRSAVVDEQEAATAALAQLSGAGGQ-EAAVR--DGALEPLLSLLQggsvraqKHAMQTLF 1069
                  67788888888888855555555556667777788888877666666666555555554444.44444..459999999999999999888888888 PP

                  HHHHHCC...HCCCCSTHHHCCHHCHHH CS
   Adaptin_N  250 etvnliv...elapknelivlavnaLvr 274 
                   +++++     la++++++  +++aL++
  KOO23989.1 1070 HVAQCVQtksALASQAAAVAPCIQALQQ 1097
                  8877776544777777788888888876 PP

  == domain 4  score: 0.9 bits;  conditional E-value: 0.037
                  .HHHHHHHCGGCGCSSCHHHHHHHHHCCHCCCCST.....HHHCCHHCHHHHHHSSCCTCHHHHHCHHHHHH CS
   Adaptin_N  229 kkellesllnllqssnnaVlletvnlivelapkne.....livlavnaLvrllsskdenlryvaLrtllkiv 295 
                  + ++++   ++lq s+++V+ e   ++   +++       ++v  v+aLv+ll+s d + +  a r++++++
  KOO23989.1 1509 EPNVVCACVERLQRSSDMVIREQSAAVLACMSDEGrradiVLVGGVEALVELLRSGDGSAQAQAARAICSVA 1580
                  345666666777777777777766666666666556677777777888888888888777777777777765 PP

  == domain 5  score: 0.0 bits;  conditional E-value: 0.067
                  THHHCCHHCHHHHHHSSCCTCHHHHHCHHHHHHHHXXTTT CS
   Adaptin_N  263 elivlavnaLvrllsskdenlryvaLrtllkivkkepkav 302 
                  +   +a+++L r ls +++  +++a+r+l ++++++ +a+
  KOO23989.1 1631 Q-SDAAIRILLRHLSGSRT-EQLIAVRSLRQLSTQQ-PAL 1667
                  4.3679*********8888.8************999.555 PP

>> CLASP_N  CLASP N terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.3   0.0   0.00042       1.5     131     216 ..     219     304 ..     207     315 .. 0.86
   2 ?   -1.0   0.0       0.3   1.1e+03      90     155 ..     419     484 ..     399     512 .. 0.74
   3 ?   -0.6   0.0      0.22     8e+02     150     199 ..    1064    1110 ..    1040    1118 .. 0.52
   4 ?   -3.5   0.0       1.7     6e+03      77     131 ..    1452    1506 ..    1448    1563 .. 0.65

  Alignments for each domain:
  == domain 1  score: 8.3 bits;  conditional E-value: 0.00042
     CLASP_N 131 ilqvlsvalqdKnvqpReysaiwLkilltrfeshkskleasllldliekslkkgleDanptVRetaRstfweffkvwPsrAksll.s 216
                 il +++va+ + + +++e ++  L+ + + +++h++++++ ++l  i+k+++ g + a p+ R++a +++  ++k  P+++ ++   
  KOO23989.1 219 ILPMVEVASRG-SMKAKEQAVAVLRRMASLSAEHRAAVSRAGGLAPIVKVIVGGTTAATPQLRSEACTALAWLSKGQPANQSAIAdA 304
                 56677788888.8999************************************************************99999988744 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 0.3
     CLASP_N  90 pmveillptLlkllgdtKkiisqnanqalaallsnasfspri.lqvlsvalqdKnvqpReysaiwLk 155
                 ++   ll++Ll +++d K  ++q + +al  ll ++    ++ +     ++++K   + ++s+i L+
  KOO23989.1 419 SFHAELLTSLLGVVQDAKGTVAQCSLIALLVLLLETD-ARDVvQADAVGLCVEKLGDASSVSTIVLA 484
                 5667789999999999999999999999999999999.55554777777888887777777777665 PP

  == domain 3  score: -0.6 bits;  conditional E-value: 0.22
     CLASP_N  150 saiwLkilltrfeshkskleasllldliekslkkgleDanptVRetaRst 199 
                  +++ L  + +  + +ks+l  ++   ++ ++++++ + ++ +VRe+a  +
  KOO23989.1 1064 AMQTLFHVAQCVQ-TKSALASQA--AAVAPCIQALQQSSDAEVREQAAVV 1110
                  3333333333333.444444444..3355555555555555555554333 PP

  == domain 4  score: -3.5 bits;  conditional E-value: 1.7
     CLASP_N   77 lkelaiqlkeqldpmveillptLlkllgdtKkiisqnanqalaallsnasfspri 131 
                  l +l+ ++  ++ + +e +l  L++ll d   ++   a qal  l   a+ ++ +
  KOO23989.1 1452 LAQLVAVERGAFLATSEGILAPLVNLLLDSGVRAQGLAMQALHHLALLAETKSAV 1506
                  5666666777777777788888888888888887777777777665544443433 PP

>> Proteasom_PSMB  Proteasome non-ATPase 26S subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.4   0.8     0.049   1.8e+02      73     155 ..     166     248 ..     160     257 .. 0.91
   2 ?   -1.8   0.1      0.23   8.3e+02     289     322 ..     507     540 ..     406     554 .. 0.65
   3 ?   -2.2   0.0      0.31   1.1e+03     390     440 ..     757     809 ..     718     815 .. 0.73
   4 ?   -0.8   0.1      0.11     4e+02     202     226 ..    1047    1071 ..     969    1116 .. 0.58
   5 ?    1.9   0.3     0.018        63      63     161 ..    1283    1383 ..    1271    1525 .. 0.78
   6 ?    8.2   0.0   0.00021      0.74     204     273 ..    1761    1828 ..    1751    1836 .. 0.88

  Alignments for each domain:
  == domain 1  score: 0.4 bits;  conditional E-value: 0.049
  Proteasom_PSMB  73 alavdelaedlkvvlleglshanpnvkalvLaeleRiveekegalellkneelllliikalreedlsvaeeairllskllkqe 155
                     al+ d+l++  k+v+++ ++ +  + ++  L el+R ve ++   e   +e  +l +++      +++ e+a  +l++++  +
      KOO23989.1 166 ALQQDTLMRRAKIVVRAMVETSRTEEREGPLLELHRLVERNKNLAEAVVTEGGILPMVEVASRGSMKAKEQAVAVLRRMASLS 248
                     578899999**********************************9*******9999999999999*************998755 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 0.23
  Proteasom_PSMB 289 eklfemlesedptilpvAldtlgvlassvegkev 322
                     +kl  +l+s +   l  Al  l  las  +g+e+
      KOO23989.1 507 HKLVGQLKSTNLAALEHALALLDHLASESDGREA 540
                     2222333333333333333333333333333333 PP

  == domain 3  score: -2.2 bits;  conditional E-value: 0.31
  Proteasom_PSMB 390 nvildivkkPFpeLkcaalkllkaiak.ypwgvkklin.tpgfveylLdrkse 440
                     nv+l+++++   + +  al +l+++++ y + v+ l++ + + + +lLd+   
      KOO23989.1 757 NVFLELAETDGQQGQSMALAILHKLCNsYDSRVQSLLAsSFSLMRWLLDEMVS 809
                     55555555555566778999999999657777776665156999999998765 PP

  == domain 4  score: -0.8 bits;  conditional E-value: 0.11
  Proteasom_PSMB  202 ekllkeldgeDvLvqldalelltel 226 
                      e ll+ l+g  v +q  a+++l ++
      KOO23989.1 1047 EPLLSLLQGGSVRAQKHAMQTLFHV 1071
                      3333333333333333333333333 PP

  == domain 5  score: 1.9 bits;  conditional E-value: 0.018
  Proteasom_PSMB   63 cvellklilkalavdelaedlk.vvlleglsh..anpnvkalvLaeleRiveekegalellkneelllliikalreedlsvaeeairllskll 152 
                       ++ll  +  a + d++a++   +vlle ++   +  ++ + + a+l+R v +  g +++l+  ++ +++++ l++   +v ++a ++++ l+
      KOO23989.1 1283 VLQLLASVATATHADAVARQGAtEVLLEAVQYrlSSRALVEAAAASLARLVITPTGRTAVLNGGDV-TAVVELLNSRYGDVPQHALEMMRSLA 1374
                      456666666666666666554303344444321123333444455699999999999999999997.57889999999999999999999998 PP

  Proteasom_PSMB  153 kqeagleel 161 
                      +q+ g  ++
      KOO23989.1 1375 EQSDGRVAV 1383
                      887665555 PP

  == domain 6  score: 8.2 bits;  conditional E-value: 0.00021
  Proteasom_PSMB  204 llkeldgeDvLvqldalelltelAe.gkhgleyleqkgvvdkiselierveedPlgelllpglvkFfgkla 273 
                       + +l   D+ vq++ale+l  lA+ g+ g++++ + +   ++  l  r + dP g++    +    ++la
      KOO23989.1 1761 CVGVLHRTDLGVQAQALEILHCLASaGEDGRAAIGKANGAAQLVALATRPDGDPTGKMTATRI---LCELA 1828
                      57788889************************************************9975444...66666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (2068 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       672  (0.0374812); expected 358.6 (0.02)
Passed bias filter:                      421  (0.0234815); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 1.13u 0.34s 00:00:01.47 Elapsed: 00:00:00.49
# Mc/sec: 12595.26
//
Query:       KOO23990.1  [L=266]
Description: beta carotene dioxygenase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.3e-35  122.2   0.0    1.1e-17   64.4   0.0    2.0  2  RPE65     Retinal pigment epithelial membrane protein


Domain annotation for each model (and alignments):
>> RPE65  Retinal pigment epithelial membrane protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.4   0.0   6.1e-22   1.1e-17     185     295 ..      71     188 ..      36     202 .. 0.75
   2 !   56.0   0.0   2.2e-19     4e-15     410     463 .]     205     259 ..     198     259 .. 0.94

  Alignments for each domain:
  == domain 1  score: 64.4 bits;  conditional E-value: 6.1e-22
                 EEEEEECS.S..------EEE-SSEEEEEE--EECHC.H..........CCCTCGGCEEE-TTS-EEEEEEETTTT--GG.....EEEEE--SEEEEEE CS
       RPE65 185 evkiklpgeklkpayiHdfalTenyvvlvelplklnlkk..........gkksggdalewdpekptrfgvipRrgekegvakf..rwfeteaffvfHta 271
                 +v+i+l g   +  +iH+f +T++yv+lv + l++++               +g ++l w+  ++t+++v++ ++++ ++     r+f ++++f  H++
  KOO23990.1  71 QVRIPLAG--NGLPMIHSFQVTRRYVILVLCSLRVEPHLigsklfvlqeP-FAGVQTLGWRGHQNTTVYVMDIESTDPTT--GplRTFSIDPMFLNHHI 164
                 45555555..4589********************5443355555665433.358899*****************633333..13489999********* PP

                 EEEEET.TCEEEEEEEEE.SS.-- CS
       RPE65 272 Nayeeeedgevvvdlcryedaevl 295
                 Na+e+e+  ev++d+++y+d ++l
  KOO23990.1 165 NAWEDEASLEVNMDVIAYRDGSFL 188
                 *****96666********998644 PP

  == domain 2  score: 56.0 bits;  conditional E-value: 2.2e-19
                 TTTSSTT-EEEEEEEEET.TTEEEEEEEETTBCCCSEEEEESS---S--BEEEEE CS
       RPE65 410 agateEDdGvllsvvlde.eersellvldAktltevArvelpqrvpygfHGtfvp 463
                 ++at+EDdGv+lsv+ld  +++s+llvl+A+t++++A++  p+ +p +fHG ++p
  KOO23990.1 205 ERATSEDDGVVLSVMLDGkRGKSYLLVLNATTMQTMATAYSPVVMPADFHGEWFP 259
                 4579************99***********************************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (266 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       302  (0.0168442); expected 358.6 (0.02)
Passed bias filter:                      295  (0.0164538); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.25s 00:00:00.71 Elapsed: 00:00:00.43
# Mc/sec: 1874.12
//
Query:       KOO23991.1  [L=356]
Description: hypothetical protein Ctob_007451 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.9e-11   42.7   1.5    6.8e-05   22.5   0.1    3.2  3  TPR_1     Tetratricopeptide repeat
    4.5e-10   38.9   3.7    2.6e-05   24.0   0.2    3.4  3  TPR_2     Tetratricopeptide repeat
    3.9e-05   23.3   0.8       0.83    9.4   0.1    3.3  3  TPR_11    TPR repeat
    0.00012   22.1   2.7    0.00046   20.3   2.7    2.0  1  TPR_9     Tetratricopeptide repeat
    0.00019   21.9   9.3     0.0027   18.4   0.4    4.1  3  TPR_14    Tetratricopeptide repeat
    0.00032   20.7   0.4      0.035   14.3   0.1    2.7  2  TPR_8     Tetratricopeptide repeat
    0.00068   20.2   8.7     0.0014   19.2   1.9    2.7  2  TPR_16    Tetratricopeptide repeat
     0.0021   18.6   2.4     0.0021   18.6   2.4    3.2  3  TPR_19    Tetratricopeptide repeat
     0.0039   17.4   6.7      0.041   14.2   1.9    3.2  3  TPR_12    Tetratricopeptide repeat
  ------ inclusion threshold ------
       0.04   14.2   0.0      0.091   13.1   0.0    1.5  1  DUF3846   Domain of unknown function (DUF3846)
        0.1   12.8   3.7       0.15   12.3   1.1    2.5  3  ANAPC3    Anaphase-promoting complex, cyclosome, subunit 3
       0.14   12.6   5.4       0.65   10.4   4.7    2.5  2  BTAD      Bacterial transcriptional activator domain
       0.31   11.8   2.5         17    6.3   0.3    3.6  3  TPR_6     Tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> TPR_1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.2   0.0      0.55   7.5e+02      11      28 ..     220     237 ..     217     239 .. 0.85
   2 !   16.9   0.1   2.8e-06    0.0039       4      32 ..     269     297 ..     267     298 .. 0.92
   3 !   22.5   0.1   4.9e-08   6.8e-05       2      33 ..     301     332 ..     300     333 .. 0.96

  Alignments for each domain:
  == domain 1  score: 0.2 bits;  conditional E-value: 0.55
                 HHHTT-HHHHHHHHHHHH CS
       TPR_1  11 yfklgkydeAleyyekAL 28 
                 +fk+g+   A+  y +A+
  KOO23991.1 220 LFKQGDVAGAVTKYFEAI 237
                 89*****99999999998 PP

  == domain 2  score: 16.9 bits;  conditional E-value: 2.8e-06
                 HHHHHHHHHHTT-HHHHHHHHHHHHHHST CS
       TPR_1   4 lynlGnayfklgkydeAleyyekALelnP 32 
                 l n +++ +k +++ +A+e++++A+ l++
  KOO23991.1 269 LINVAMCRLKEERPYDAIEACDRAIALDE 297
                 7899***********************97 PP

  == domain 3  score: 22.5 bits;  conditional E-value: 4.9e-08
                 HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT CS
       TPR_1   2 kalynlGnayfklgkydeAleyyekALelnPn 33 
                 ka+y++G+a++ l++y  A +   +A +l Pn
  KOO23991.1 301 KAWYRRGQACMALEQYGAARKNLTRAATLLPN 332
                 7****************************998 PP

>> TPR_2  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.4   0.0      0.15   2.1e+02       8      24 ..     217     233 ..     212     240 .. 0.81
   2 !   11.8   0.1   0.00015      0.21       4      33 ..     269     298 ..     267     299 .. 0.92
   3 !   24.0   0.2   1.9e-08   2.6e-05       2      33 ..     301     332 ..     300     333 .. 0.96

  Alignments for each domain:
  == domain 1  score: 2.4 bits;  conditional E-value: 0.15
       TPR_2   8 GlayyklgdyeeAleaf 24 
                 G  ++k+gd + A+  +
  KOO23991.1 217 GTDLFKQGDVAGAVTKY 233
                 778999***99999887 PP

  == domain 2  score: 11.8 bits;  conditional E-value: 0.00015
       TPR_2   4 lynlGlayyklgdyeeAleafekAleldPn 33 
                 l n +++ +k  ++ +A+ea+++A++ld++
  KOO23991.1 269 LINVAMCRLKEERPYDAIEACDRAIALDEQ 298
                 78999**********************976 PP

  == domain 3  score: 24.0 bits;  conditional E-value: 1.9e-08
       TPR_2   2 ealynlGlayyklgdyeeAleafekAleldPn 33 
                 +a+y++G+a+++l +y  A++ + +A  l Pn
  KOO23991.1 301 KAWYRRGQACMALEQYGAARKNLTRAATLLPN 332
                 79****************************98 PP

>> TPR_11  TPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.2   0.0    0.0015         2       3      22 ..     219     238 ..     217     238 .. 0.89
   2 !    9.4   0.1    0.0006      0.83      13      38 ..     285     310 ..     284     313 .. 0.90
   3 !    6.8   0.1    0.0039       5.4       1      30 [.     307     336 ..     307     339 .. 0.91

  Alignments for each domain:
  == domain 1  score: 8.2 bits;  conditional E-value: 0.0015
      TPR_11   3 ayyeqGkyeeAieaYkkAlk 22 
                  +++qG+  +A+++Y +A++
  KOO23991.1 219 DLFKQGDVAGAVTKYFEAID 238
                 689************99995 PP

  == domain 2  score: 9.4 bits;  conditional E-value: 0.0006
      TPR_11  13 AieaYkkAlkldPdnaeayynLGlay 38 
                 Aiea  +A++ld++   a+y +G+a 
  KOO23991.1 285 AIEACDRAIALDEQAGKAWYRRGQAC 310
                 899999*****************995 PP

  == domain 3  score: 6.8 bits;  conditional E-value: 0.0039
      TPR_11   1 GdayyeqGkyeeAieaYkkAlkldPdnaea 30 
                 G+a++++ +y +A +++ +A  l P++ e+
  KOO23991.1 307 GQACMALEQYGAARKNLTRAATLLPNSKEI 336
                 89*******************999997665 PP

>> TPR_9  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.3   2.7   3.4e-07   0.00046       7      64 ..     278     335 ..     274     348 .. 0.87

  Alignments for each domain:
  == domain 1  score: 20.3 bits;  conditional E-value: 3.4e-07
       TPR_9   7 reedweralavverllllaPddpeerrdRGlllaqlGclsaAladLeaylalapdapd 64 
                  ee+   a+++++r ++l+ ++   ++ RG++ + l+++ aA++ L +++ l p+  +
  KOO23991.1 278 KEERPYDAIEACDRAIALDEQAGKAWYRRGQACMALEQYGAARKNLTRAATLLPNSKE 335
                 6788889*******************************************99995443 PP

>> TPR_14  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.0   0.1      0.75     1e+03       6      33 ..     215     242 ..     203     248 .. 0.70
   2 !   11.4   0.5   0.00034      0.46      14      43 ..     279     308 ..     262     308 .. 0.85
   3 !   18.4   0.4     2e-06    0.0027       2      43 ..     301     342 ..     300     343 .. 0.95

  Alignments for each domain:
  == domain 1  score: 1.0 bits;  conditional E-value: 0.75
      TPR_14   6 alaeallalGdpdeAiallrralalaPd 33 
                 a++  l+ +Gd ++A++ + +a+++  +
  KOO23991.1 215 AAGTDLFKQGDVAGAVTKYFEAIDALGG 242
                 4555688999999999955444444444 PP

  == domain 2  score: 11.4 bits;  conditional E-value: 0.00034
      TPR_14  14 lGdpdeAiallrralalaPddaeawlllaq 43 
                  ++p +Ai++++ra+al+ +   aw++ +q
  KOO23991.1 279 EERPYDAIEACDRAIALDEQAGKAWYRRGQ 308
                 5789*********************99886 PP

  == domain 3  score: 18.4 bits;  conditional E-value: 2e-06
      TPR_14   2 eallalaeallalGdpdeAiallrralalaPddaeawlllaq 43 
                 +a++++++a++al+++ +A++ l ra  l P++ e++ + a+
  KOO23991.1 301 KAWYRRGQACMALEQYGAARKNLTRAATLLPNSKEIREEHAR 342
                 59***********************************99887 PP

>> TPR_8  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.8   0.1     0.058        79       6      32 ..     271     297 ..     268     298 .. 0.85
   2 !   14.3   0.1   2.5e-05     0.035       2      30 ..     301     329 ..     300     333 .. 0.91

  Alignments for each domain:
  == domain 1  score: 3.8 bits;  conditional E-value: 0.058
                 HHHHHHHHTT-HHHHHHHHHHHHHHHH CS
       TPR_8   6 nlgsiylklgdyeeAkeyyekaleldp 32 
                 n +++ lk ++   A+e++ +a+ ld+
  KOO23991.1 271 NVAMCRLKEERPYDAIEACDRAIALDE 297
                 67788888999999***********97 PP

  == domain 2  score: 14.3 bits;  conditional E-value: 2.5e-05
                 CHHHHHHHHHHHTT-HHHHHHHHHHHHHH CS
       TPR_8   2 eayynlgsiylklgdyeeAkeyyekalel 30 
                 +a+y+ g++++ l++y +A + + +a +l
  KOO23991.1 301 KAWYRRGQACMALEQYGAARKNLTRAATL 329
                 79*********************999876 PP

>> TPR_16  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.3   0.7     0.045        63       3      59 ..     216     236 ..     203     245 .. 0.66
   2 !   19.2   1.9     1e-06    0.0014      11      66 ..     280     332 ..     273     334 .. 0.88

  Alignments for each domain:
  == domain 1  score: 4.3 bits;  conditional E-value: 0.045
      TPR_16   3 laraalragdyddAaaaleaalkrdpssPdaaeAllllgdaalrqgrlaeAaalyra 59 
                 ++++++++gd + A+  +                                    ++a
  KOO23991.1 216 AGTDLFKQGDVAGAVTKY------------------------------------FEA 236
                 566666666666666555....................................433 PP

  == domain 2  score: 19.2 bits;  conditional E-value: 1e-06
      TPR_16  11 gdyddAaaaleaalkrdpssPdaaeAllllgdaalrqgrlaeAaalyraalraapd 66 
                  ++ dA++a ++a+++d    +a  A++ +g+a+ ++  + +A+  + +a++  p+
  KOO23991.1 280 ERPYDAIEACDRAIALD---EQAGKAWYRRGQACMALEQYGAARKNLTRAATLLPN 332
                 56679************...************************777777788876 PP

>> TPR_19  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.2       7.1   9.7e+03      13      25 ..     190     202 ..     181     211 .. 0.58
   2 ?    1.5   0.1      0.32   4.4e+02       1      28 [.     220     247 ..     220     270 .. 0.83
   3 !   18.6   2.4   1.5e-06    0.0021       2      62 ..     277     337 ..     276     347 .. 0.91

  Alignments for each domain:
  == domain 1  score: -2.8 bits;  conditional E-value: 7.1
      TPR_19  13 lleqalqedpkna 25 
                  l+++ q++pk +
  KOO23991.1 190 QLKSMGQAAPKLP 202
                 4566666666544 PP

  == domain 2  score: 1.5 bits;  conditional E-value: 0.32
      TPR_19   1 llaegdyaeAlalleqalqedpknaear 28 
                 l+++gd a A+  + +a+++  ++a ++
  KOO23991.1 220 LFKQGDVAGAVTKYFEAIDALGGDAGLQ 247
                 689*******877777778877777665 PP

  == domain 3  score: 18.6 bits;  conditional E-value: 1.5e-06
      TPR_19   2 laegdyaeAlalleqalqedpknaearllLAeallalgqldeAealLdalpeedpddarya 62 
                 l+e+++ +A+++  +a++ d + + a+++  +a++al q+ +A++ L ++    p++ +++
  KOO23991.1 277 LKEERPYDAIEACDRAIALDEQAGKAWYRRGQACMALEQYGAARKNLTRAATLLPNSKEIR 337
                 6788999*******************************************99999987766 PP

>> TPR_12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.3   0.1      0.15   2.1e+02      40      71 ..     205     236 ..     197     240 .. 0.78
   2 !   14.2   1.9     3e-05     0.041       5      75 ..     269     330 ..     261     332 .. 0.83
   3 !    7.5   1.0    0.0035       4.8       4      33 ..     301     330 ..     298     349 .. 0.80

  Alignments for each domain:
  == domain 1  score: 2.3 bits;  conditional E-value: 0.15
      TPR_12  40 dhpltattlrnLgrlyralgryeeAlelleea 71 
                 +++++at+  + g+ ++++g+ + A+  + ea
  KOO23991.1 205 ERLAAATSAKAAGTDLFKQGDVAGAVTKYFEA 236
                 67889999999999999999988887666555 PP

  == domain 2  score: 14.2 bits;  conditional E-value: 3e-05
      TPR_12   5 alnnlaavlrrlgrydeAlellekaleiarrllGpdhpltattlrnLgrlyralgryeeAlelleealaia 75 
                 +  n+a++ ++ +r  +A+e +++a+++ +++      + a+++r+ + +  al++y +A++ l++a  ++
  KOO23991.1 269 L-INVAMCRLKEERPYDAIEACDRAIALDEQA------GKAWYRRGQACM--ALEQYGAARKNLTRAATLL 330
                 3.39*********************9999666......367777777777..6778********9998775 PP

  == domain 3  score: 7.5 bits;  conditional E-value: 0.0035
      TPR_12   4 talnnlaavlrrlgrydeAlellekaleia 33 
                 +a++++++++++l++y  A+++l +a  + 
  KOO23991.1 301 KAWYRRGQACMALEQYGAARKNLTRAATLL 330
                 68999********************98875 PP

>> DUF3846  Domain of unknown function (DUF3846)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.0   6.6e-05     0.091      40      84 ..     103     151 ..      96     159 .. 0.85

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 6.6e-05
     DUF3846  40 vtlvvndEGklkglpvN.raigd...geiadviaGtflitglddeegef 84 
                 v ++v+d G++k++p+N ra +      + + + G+++++ + d++  f
  KOO23991.1 103 VNMYVDDKGQAKQSPINeRASAVctaCGMPTEVRGDAFVAKVWDDQDGF 151
                 88***************88877799955888899999999998886666 PP

>> ANAPC3  Anaphase-promoting complex, cyclosome, subunit 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.0       4.6   6.3e+03       9      25 ..     201     212 ..     194     236 .. 0.57
   2 ?   -1.0   0.0       1.5   2.1e+03      70      80 ..     231     241 ..     224     242 .. 0.86
   3 ?   12.3   1.1   0.00011      0.15      30      80 ..     273     324 ..     253     326 .. 0.88

  Alignments for each domain:
  == domain 1  score: -2.5 bits;  conditional E-value: 4.6
                 HHHHHHHH.HHH--HHH CS
      ANAPC3   9 iflaerllaaetesped 25 
                 + laerl aa      +
  KOO23991.1 201 LPLAERLAAA-----TS 212
                 5567777632.....12 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 1.5
                 T-HHHHHHHH- CS
      ANAPC3  70 kkyeeAiaaLe 80 
                  ky eAi+aL+
  KOO23991.1 231 TKYFEAIDALG 241
                 6999*****98 PP

  == domain 3  score: 12.3 bits;  conditional E-value: 0.00011
                 HHHHHHTT-HHHHHHHHHCT.SHHHC-HHHHHHHHHHHHHTT-HHHHHHHH- CS
      ANAPC3  30 AlclylngqykrAyellrka.klnskslgcrylfAqcllkLkkyeeAiaaLe 80 
                 A c ++ ++ + A+e +++a  l+++  +++y  +q++ +L++y  A++ L 
  KOO23991.1 273 AMCRLKEERPYDAIEACDRAiALDEQAGKAWYRRGQACMALEQYGAARKNLT 324
                 889999999**************************************99986 PP

>> BTAD  Bacterial transcriptional activator domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.0       2.5   3.4e+03      87     115 ..     111     139 ..     105     142 .. 0.81
   2 ?   10.4   4.7   0.00047      0.65       7     129 ..     211     326 ..     207     342 .. 0.87

  Alignments for each domain:
  == domain 1  score: -1.7 bits;  conditional E-value: 2.5
                 HHHHHSTT-HHHHHHHHHHHHHTT-HHHH CS
        BTAD  87 alvaehPlrErlhrqlmrAlarsGrqaeA 115
                 +++++ P +Er+ + + ++ + ++ +++A
  KOO23991.1 111 GQAKQSPINERASAVCTACGMPTEVRGDA 139
                 678999*****999988888877777777 PP

  == domain 2  score: 10.4 bits;  conditional E-value: 0.00047
                 HHHHHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHH CS
        BTAD   7 ealvaagraalaagdpeeaaelleaAlalwrGpaladleagewleaererleelrlealealaeaelrlGraeealaelealvaehPlrErlhrqlmrA 105
                   ++aag+++ ++gd+++a+ ++ +A++   G+a  +    ++ ++   +  el l +l   a  +l+ +r  +a++  ++++a++        q  +A
  KOO23991.1 211 TSAKAAGTDLFKQGDVAGAVTKYFEAIDALGGDAGLQGGTDDEQTSDKHAAAELLLVCLINVAMCRLKEERPYDAIEACDRAIALDE-------QAGKA 302
                 567899***************************9888777789999999999999****************************9774.......55678 PP

                 HHHTT-HHHHHHHHHHHHHHHHHH CS
        BTAD 106 larsGrqaeALevYerlrrlLaee 129
                  +r G+   ALe+Y  +r+ L + 
  KOO23991.1 303 WYRRGQACMALEQYGAARKNLTRA 326
                 89****************999876 PP

>> TPR_6  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.9   0.0      0.66     9e+02      10      26 ..     220     236 ..     215     240 .. 0.71
   2 ?    1.8   0.0      0.34   4.7e+02       5      27 ..     271     293 ..     267     295 .. 0.80
   3 ?    6.3   0.3     0.012        17       2      33 .]     302     333 ..     301     333 .. 0.92

  Alignments for each domain:
  == domain 1  score: 0.9 bits;  conditional E-value: 0.66
                 HHHHHHHHHHHHHHHHH CS
       TPR_6  10 yrklgdtdkAlealerl 26 
                 ++k+gd + A++ + + 
  KOO23991.1 220 LFKQGDVAGAVTKYFEA 236
                 57888999999855444 PP

  == domain 2  score: 1.8 bits;  conditional E-value: 0.34
                 HHHHHHHHHHHHHHHHHHHHHHH CS
       TPR_6   5 klalsyrklgdtdkAlealerli 27 
                 + a++++k  ++ +A+ea +r i
  KOO23991.1 271 NVAMCRLKEERPYDAIEACDRAI 293
                 789****9658889999998887 PP

  == domain 3  score: 6.3 bits;  conditional E-value: 0.012
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHH-TT- CS
       TPR_6   2 AlyklalsyrklgdtdkAlealerlikeYPdS 33 
                 A y+++++  +l ++ +A++ l r  +  P+S
  KOO23991.1 302 AWYRRGQACMALEQYGAARKNLTRAATLLPNS 333
                 89*********88***********99999987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (356 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       475  (0.0264934); expected 358.6 (0.02)
Passed bias filter:                      379  (0.0211389); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                        13  (0.000725082); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 0.49u 0.27s 00:00:00.76 Elapsed: 00:00:00.43
# Mc/sec: 2490.64
//
Query:       KOO23992.1  [L=1147]
Description: hypothetical protein Ctob_005786 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1147 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       440  (0.0245412); expected 358.6 (0.02)
Passed bias filter:                      353  (0.0196888); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.73u 0.27s 00:00:01.00 Elapsed: 00:00:00.45
# Mc/sec: 7723.59
//
Query:       KOO23993.1  [L=265]
Description: hypothetical protein Ctob_005787 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    0.00036   20.4   0.0    0.00064   19.6   0.0    1.3  1  PUB       PUB domain


Domain annotation for each model (and alignments):
>> PUB  PUB domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.6   0.0   3.6e-08   0.00064      27      61 ..       7      41 ..       3      54 .. 0.84

  Alignments for each domain:
  == domain 1  score: 19.6 bits;  conditional E-value: 3.6e-08
         PUB 27 yrrIrleNkafkekvlplegavelLealGFeekne 61
                 rrI  +Nka+ +++l+ +g+  l+ a+GF+ +  
  KOO23993.1  7 RRRIGAANKALNSRLLSAKGGSALFAACGFVAEPA 41
                599***************************97654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (265 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       404  (0.0225333); expected 358.6 (0.02)
Passed bias filter:                      351  (0.0195772); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.23s 00:00:00.68 Elapsed: 00:00:00.41
# Mc/sec: 1939.86
//
Query:       KOO23994.1  [L=523]
Description: engulfment and cell motility elm family protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    8.1e-42  143.3   0.3    1.3e-41  142.6   0.1    1.5  2  ELMO_CED12  ELMO/CED-12 family
  ------ inclusion threshold ------
        0.1   12.8   0.0       0.35   11.1   0.0    1.8  2  Sod_Fe_C    Iron/manganese superoxide dismutases, C-terminal 


Domain annotation for each model (and alignments):
>> ELMO_CED12  ELMO/CED-12 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  142.6   0.1   1.5e-45   1.3e-41       2     176 ..     102     275 ..     101     276 .. 0.90
   2 ?   -4.2   0.0       1.7   1.6e+04      15      34 ..     482     501 ..     476     509 .. 0.65

  Alignments for each domain:
  == domain 1  score: 142.6 bits;  conditional E-value: 1.5e-45
  ELMO_CED12   2 llekkrktpldlenpeherlLkelwsalypdepeinstksrisekWkklGFqgedPatDFrgtGlLgLenLlyfaenheeefqkllsessrrpseeeyp 100
                 +l++++ t++d+++ +he+lL++lws+ +++e +++     +se+W +lGFq+ dP +D+rg+GlLgL nL+yf e++ + fq+l+s +++r    +yp
  KOO23994.1 102 RLHELKCTAYDASDGTHEQLLRRLWSCGFGSELKCE----LTSERWVHLGFQSADPTKDLRGMGLLGLANLVYFGEHYADVFQRLVSAQRKR----DYP 192
                 6899999****************************8....*************************************************985....69* PP

  ELMO_CED12 101 favasinvtslllelleiektdeedeeeqkdklkt........nntkllssnlnafeelfsvlfllfdslWkekkatimdfnkv 176
                 +a a+in+t+lllell+ ++ + e+++ q+++ ++         ++ +++  ++afe+++++++ ++d++ +++ a++ +fn+v
  KOO23994.1 193 LACAGINITALLLELLNMKD-EGEPQTVQSRPPFDgqwgsdmfFFFCHMFYRERAFEDMYCFCLRRLDRMMVAMDANYAEFNTV 275
                 ***************99955.3333322233333378******999999999******************************98 PP

  == domain 2  score: -4.2 bits;  conditional E-value: 1.7
  ELMO_CED12  15 npeherlLkelwsalypdep 34 
                 +   +++Lk+l +a+ ++++
  KOO23994.1 482 KNAFQNALKKLEAASKKEKE 501
                 55667778888776664433 PP

>> Sod_Fe_C  Iron/manganese superoxide dismutases, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   3.9e-05      0.35       4      41 ..     282     319 ..     280     332 .. 0.89
   2 ?   -3.3   0.0       1.1     1e+04      28      54 ..     374     402 ..     350     409 .. 0.64

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 3.9e-05
                 HHHHHHHHHHSSHHHHHHHHHHHHHHSSSSEEEEEEEE CS
    Sod_Fe_C   4 elaeaieedfgslekfkkefkaaalavfgsGwawLvld 41 
                 +l ea+ ++  s+ +fk+ ++aa+ + +gsGw+ Lv +
  KOO23994.1 282 RLVEALAQRPLSFREFKRLMAAASSESEGSGWTSLVSK 319
                 67888888999************************976 PP

  == domain 2  score: -3.3 bits;  conditional E-value: 1.1
                 HHSSSSEEEEEEEETT..TEEEEEEEETT CS
    Sod_Fe_C  28 lavfgsGwawLvldkk..kkLeivttknq 54 
                 +a  g G++ +++++    kL+ v++k q
  KOO23994.1 374 AASLGDGFMTVAKKNVdpAKLKSVSAKWQ 402
                 45568888888777653446766666555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (523 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1039  (0.0579508); expected 358.6 (0.02)
Passed bias filter:                      549  (0.0306208); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.56u 0.25s 00:00:00.81 Elapsed: 00:00:00.41
# Mc/sec: 3803.66
//
Query:       KOO23995.1  [L=155]
Description: hypothetical protein Ctob_005785 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (155 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       295  (0.0164538); expected 358.6 (0.02)
Passed bias filter:                      287  (0.0160076); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.24s 00:00:00.60 Elapsed: 00:00:00.37
# Mc/sec: 1240.19
//
Query:       KOO23996.1  [L=256]
Description: cyclin b2 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.8e-28   98.8   0.1    6.2e-23   80.9   0.0    2.1  2  Cyclin_N  Cyclin, N-terminal domain
    1.7e-06   28.1   0.4    3.4e-06   27.2   0.4    1.4  1  Cyclin_C  Cyclin, C-terminal domain


Domain annotation for each model (and alignments):
>> Cyclin_N  Cyclin, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   80.9   0.0   6.9e-27   6.2e-23      21     120 ..       2     114 ..       1     118 [. 0.96
   2 !   15.8   0.3   9.8e-07    0.0088      35      99 ..     125     189 ..     122     204 .. 0.91

  Alignments for each domain:
  == domain 1  score: 80.9 bits;  conditional E-value: 6.9e-27
                 TCTSSS-HHHHHHHHHHHHHHHHHTT--TTHHHHHHHHHHHHHHHS---CCCHHHHHHHHHHHHHHH.............HSSS---HHHHHHHTTTSS CS
    Cyclin_N  21 dqqpelnpemRailidwlvevaekfkltpetlflavnyldRflskksvpkdklqlvgatcLllAaKv.............eeisppkledlvyitdeaf 106
                  +q+elnp mR+il+dwl e+  +++l++e+l+     +dRfls++ vp+d lqlvga++L+lA+               +e s  +++d+vy+td+++
  KOO23996.1   2 GRQEELNPGMRHILVDWLYELYDELELSTEVLLQGTYHVDRFLSTQHVPRDALQLVGAVSLMLASNHfcklphqdgdppmREHSLNHADDVVYWTDGTY 100
                 5799************************************************************9999999*********9999*************** PP

                 -HHHHHHHHHHHHH CS
    Cyclin_N 107 teeeilemErliLe 120
                 t e+++emE  +L 
  KOO23996.1 101 TVEQVVEMEARVLF 114
                 **********9995 PP

  == domain 2  score: 15.8 bits;  conditional E-value: 9.8e-07
                 HHHHHHHHHHTT--TTHHHHHHHHHHHHHHHS---CCCHHHHHHHHHHHHHHHHSSS---HHHHH CS
    Cyclin_N  35 idwlvevaekfkltpetlflavnyldRflskksvpkdklqlvgatcLllAaKveeisppkledlv 99 
                 +++l+  +++  l   t+ lav++l    ++  + + + +l++a +L+lA K  ++s++ ++  +
  KOO23996.1 125 LHFLTLACASATLPDVTISLAVELLVVCAKEYTLLRVHPRLIAACALYLAVKNTRTSTMAVKSTM 189
                 5899999******************9988899************************999988765 PP

>> Cyclin_C  Cyclin, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.2   0.4   3.7e-10   3.4e-06       3      81 ..     124     218 ..     123     224 .. 0.78

  Alignments for each domain:
  == domain 1  score: 27.2 bits;  conditional E-value: 3.7e-10
                 HHHHHHHHHCCSSHT.-HCCHHCHHCHHHHHHCSCCHCCS-HHHHHHHHHHHCCHHHHS--..................S-HHHHHHC---HHHHHH CS
    Cyclin_C   3 plsFlrrflkaadasedselrtlakylleltlldydflsyppSliAaaalllarstlnspe..................wtetlehytgyskedlkp 81 
                 pl+Fl + + +a    d  + +la  ll +++ +y++l++ p liAa al+la +  ++++                  wt++l + +gy    +k+
  KOO23996.1 124 PLHFLTLACASA-TLPD-VTISLAVELLVVCAKEYTLLRVHPRLIAACALYLAVKNTRTSTmavkstmlagapptqeiaWTSELASRCGYPTAVIKE 218
                 99***9996663.5567.7778********************************9973333445556666666777778999999888886665555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (256 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       464  (0.0258799); expected 358.6 (0.02)
Passed bias filter:                      400  (0.0223102); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.38u 0.25s 00:00:00.63 Elapsed: 00:00:00.38
# Mc/sec: 2028.27
//
Query:       KOO23997.1  [L=286]
Description: hypothetical protein Ctob_005783 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (286 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       361  (0.020135); expected 358.6 (0.02)
Passed bias filter:                      293  (0.0163422); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.44u 0.23s 00:00:00.67 Elapsed: 00:00:00.41
# Mc/sec: 2115.64
//
Query:       KOO23998.1  [L=320]
Description: mitochondrial translocator assembly and maintenance protein 41-like protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    6.8e-70  236.1   0.0    7.8e-70  235.9   0.0    1.0  1  Tam41_Mmp37  Phosphatidate cytidylyltransferase, mitochondria


Domain annotation for each model (and alignments):
>> Tam41_Mmp37  Phosphatidate cytidylyltransferase, mitochondrial
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  235.9   0.0   4.4e-74   7.8e-70      37     322 ..       1     312 [.       1     313 [. 0.87

  Alignments for each domain:
  == domain 1  score: 235.9 bits;  conditional E-value: 4.4e-74
  Tam41_Mmp37  37 miDlifavsdpeewHslNlkqnpsHYsl.lrrlgskliskvqeklgagvyfnplvevngkliKYGVvsledllkDLleWdtLYlaGRlqKPvkilrd. 132
                  m Dl+++v+d+++wH++Nl+ n  HY++ l+ lg ++i+++q  +gagvy+n+ v++ g+++KYGV+++ +ll+DL +W++LY+aGR +KPv+ lr+ 
   KOO23998.1   1 MTDLVLVVDDARKWHRANLELNAAHYAWpLAALGGSTIAALQA-TGAGVYYNTSVQLCGRTVKYGVIECASLLDDLKHWRSLYIAGRAHKPVRPLREl 97 
                  89*************************945556*********8.*****************************************************7 PP

  Tam41_Mmp37 133 darirlanqvNlksAlraaLlllpekfteeeLyetiasLSYlGDlRmklggEnknKvkniVekqleefrelYkplleelenvellekekekeee.... 226
                   a+++l+   Nl+sAl+aaLlllp +f+   L+ ti++LSY+GD+Rm + gE ++K   i ++q + + elY+  l+e +     +  ++++      
   KOO23998.1  98 PAELELLVANNLRSALSAALLLLPLRFDDAGLFGTICGLSYSGDVRMGI-GESPRKPGDIADGQRDALAELYRGPLAEATGSIGGSVGSRSSVVaavl 194
                  77***********************************************.***********************9998877755444444343337899 PP

  Tam41_Mmp37 227 ....kkleqdlspearaellrkLPkklrskllskyekkl..................skkkkdeeeflkkiakdee....laeevkkaikkivakssl 298
                      +   qd +  ar +ll+ LP+  ++ l+  +   +                  +     +e+++++ a+++e    la  +++++ +iv+++sl
   KOO23998.1 195 sgaaSARVQDDRLPARQSLLAALPSVAQDGLVDDLLGMVaggrfrthsphcsqqlllE----ASERLWRSSATANEanaqLAAALRRTLFRIVRRASL 288
                  9885444489999*******************99665557777788888888744432....4455555544444323348999999999******** PP

  Tam41_Mmp37 299 kqslkgvltaGvvksvkYaleKlk 322
                   q++kgvltaG + s+ Yal K++
   KOO23998.1 289 AQTAKGVLTAGAATSIGYALVKIR 312
                  ********************9985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (320 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       439  (0.0244855); expected 358.6 (0.02)
Passed bias filter:                      298  (0.0166211); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.26s 00:00:00.67 Elapsed: 00:00:00.40
# Mc/sec: 2409.82
//
Query:       KOO23999.1  [L=330]
Description: formin domain containing protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.2e-37  130.0   0.1    3.6e-18   65.9   0.1    3.0  2  FH2              Formin Homology 2 Domain
  ------ inclusion threshold ------
        1.1   10.0   4.2       0.81   10.4   0.2    2.5  3  Cytochrom_B562   Cytochrome b562
        1.3    9.2   7.5       0.67   10.1   4.7    1.9  2  PEP-utilisers_N  PEP-utilising enzyme, N-terminal


Domain annotation for each model (and alignments):
>> FH2  Formin Homology 2 Domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.1   0.0   6.7e-20     4e-16      41     152 ..       6     115 ..       2     117 .. 0.95
   2 !   65.9   0.1     6e-22   3.6e-18     215     371 ..     115     312 ..     114     313 .. 0.95

  Alignments for each domain:
  == domain 1  score: 59.1 bits;  conditional E-value: 6.7e-20
                 SHHHHHHHHTBSC--HCCH......HCSCCTTCCESSS-HHHHHHHHHHHHHHTS-HHHHHHHHHTTTTCCCTHHHHHHHHHHCGGHHHHHHHHCTCTS CS
         FH2  41 ldlseleelFsakekkkkkkksekskkskkkkkkvklLdpkrsqniaIlLkklkltaeeiveaileldeealdlellenLlkmaPtkeelkklkeykge 139
                  d++++e+lF ake++k     + s++s   +++ +lLdpkrs+ ++I+Lk++k++ ee+++a+++lde++l+ + + +L k +P +ee++ ++    +
  KOO23999.1   6 FDMQRFESLFVAKEPAKPTVMVRGSSSSVVGSAQASLLDPKRSNHFGIILKQVKVSLEEMRRAVVALDEKVLTPDAVAALQKCVPLPEEIELVS--AAD 102
                 599************998888899999999***************************************************************9..899 PP

                 GTTB-HHHHHHHH CS
         FH2 140 vseLseaeqFlle 152
                 ++ L+ ae+F+l+
  KOO23999.1 103 PAALGFAEKFVLQ 115
                 **********986 PP

  == domain 2  score: 65.9 bits;  conditional E-value: 6e-22
                 TCSTTCS-SEE-GGGGGGCCCSB-STTTSBHHHHHHHHHHT..............TSGGGGGHHHHTTTHHHCCTS-HHHHHHHHHHHHHHHHHHHHHH CS
         FH2 215 dgtrrgqAkGFkLssLlkLsdvKstdnkttLLHylvkiire..............klpevldfsseLknvkkaakvnleslekevkklekglkklekel 299
                 +g+ r+ A GF+L+ L +L+++K +d++ +LL y  ++                   p +  f ++ k+v+ aak++le++ +ev  l+ gl+k+e el
  KOO23999.1 115 QGSFRAGAEGFRLECLPRLAELKTNDHRSSLLQYALAVHGGqepdttkgpadflpVQPPLTSFADKCKSVRAAAKLSLENVNEEVARLKAGLSKIEAEL 213
                 68899*****************************999977799************9999**************************************** PP

                 HHCCT............................TSSTT-THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT--TTCCHHHHHHHHHHHHHHH CS
         FH2 300 essek............................keepsdkflevlkeflkeaeeklkkleeelkeakelvkelveYfgedkkevspeeffkilreFlke 370
                 e  ++                            ++  +d+ l+v+ +f + a+ ++++l     +++e+ k l  +f e++ ++s+ee+f+ +++Fl +
  KOO23999.1 214 EHFREqaraahvdakakaaasveggvavlsareEALARDQYLQVMGSFRDGATAQVEELGCAALRMEEMHKVLRSFFAEES-KTSIEEIFSRWATFLGQ 311
                 **99999**********************998777789*********************************9999999877.6*************987 PP

                 H CS
         FH2 371 f 371
                 +
  KOO23999.1 312 V 312
                 6 PP

>> Cytochrom_B562  Cytochrome b562
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.8   0.0         3   1.8e+04      26      36 ..      59      69 ..      55      76 .. 0.53
   2 ?   10.4   0.2   0.00014      0.81      28      88 ..     173     233 ..     165     237 .. 0.82
   3 ?   -0.1   0.1      0.24   1.4e+03       7      39 ..     280     315 ..     276     328 .. 0.42

  Alignments for each domain:
  == domain 1  score: -3.8 bits;  conditional E-value: 3
  Cytochrom_B562 26 kkalkelraaa 36
                    k +l+e+r+a+
      KOO23999.1 59 KVSLEEMRRAV 69
                    44555555554 PP

  == domain 2  score: 10.4 bits;  conditional E-value: 0.00014
  Cytochrom_B562  28 alkelraaaedakeatpsklekdseeqkdYqeGldklidqldkaealakagkleeakaalk 88 
                      l+++    ++ ++a   +le+ +ee++  ++Gl+k+ ++l+  +++a a ++++ ++a++
      KOO23999.1 173 PLTSFADKCKSVRAAAKLSLENVNEEVARLKAGLSKIEAELEHFREQARAAHVDAKAKAAA 233
                     5666777777777778889999***************************999987655555 PP

  == domain 3  score: -0.1 bits;  conditional E-value: 0.24
  Cytochrom_B562   7 kqmkkalkqva...kaddaeelkkalkelraaaeda 39 
                     ++m k l+++    + +++ee+ +  +++  +++ a
      KOO23999.1 280 EEMHKVLRSFFaeeSKTSIEEIFSRWATFLGQVDAA 315
                     444444444431114444444444444444433333 PP

>> PEP-utilisers_N  PEP-utilising enzyme, N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.0       1.5   8.7e+03      42      54 ..      57      69 ..      37      86 .. 0.62
   2 ?   10.1   4.7   0.00011      0.67      23      57 ..     189     229 ..     177     260 .. 0.72

  Alignments for each domain:
  == domain 1  score: -3.1 bits;  conditional E-value: 1.5
                     HHHHHHHHHHHHH CS
  PEP-utilisers_N 42 kvreelealaeka 54
                     +v+ +le++++ +
       KOO23999.1 57 QVKVSLEEMRRAV 69
                     3344444433222 PP

  == domain 2  score: 10.1 bits;  conditional E-value: 0.00011
                      --G.GGHHHHHHHHHHHHHHHHHHHHHHHHHH......T-H CS
  PEP-utilisers_N  23 eveaedveaelerleeAlekvreelealaeka......lge 57 
                      +++ e+v++e++rl++ l k ++ele+ +e+a      +++
       KOO23999.1 189 KLSLENVNEEVARLKAGLSKIEAELEHFREQAraahvdAKA 229
                      567789*********************99999866643222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (330 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1002  (0.0558871); expected 358.6 (0.02)
Passed bias filter:                      698  (0.0389313); expected 358.6 (0.02)
Passed Vit filter:                        84  (0.00468515); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.54u 0.26s 00:00:00.80 Elapsed: 00:00:00.42
# Mc/sec: 2353.42
//
Query:       KOO24000.1  [L=339]
Description: aspartyl aminopeptidase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.6e-92  310.6   0.0    2.1e-91  306.9   0.0    1.9  1  Peptidase_M18  Aminopeptidase I zinc metalloprotease (M18)


Domain annotation for each model (and alignments):
>> Peptidase_M18  Aminopeptidase I zinc metalloprotease (M18)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  306.9   0.0   1.2e-95   2.1e-91       1     330 [.      21     337 ..      21     339 .] 0.93

  Alignments for each domain:
  == domain 1  score: 306.9 bits;  conditional E-value: 1.2e-95
                    HHHH--SHHHHHHHHHHHHHCTT-EESTTTS-ST..STTCEEEEEEETTTEEEEEEEETTS-GGG--EEEEEE---SEEEEECCEEEEETTEEEEE CS
  Peptidase_M18   1 finksptpyhvvaevaekllkagfkelsekekwk..iepggkyfvtrngssliAFavgkkykaengfsiigaHtDsptlrvKpkskkkaegylqvg 94 
                    fi++sptp+h++a+    ll agf el e++ w+   +pggkyf +r g+ l+AF +g  + a+ngf+i+gaHtDsp l++Kp skk+a+g  q++
     KOO24000.1  21 FIDASPTPFHMCAKGGAMLLAAGFVELVETDAWRplLKPGGKYFFVRGGT-LVAFFIGAAFAAGNGFNIVGAHTDSPVLKLKPCSKKSAHGCIQIN 115
                    9*********************************988*************.********************************************* PP

                    EEEESS.SSGGGTT--EEEEEEEEECTT--EEEEEECCSTT---BBB----GGG-GG...GSS--TTTTTSEEEEEEEE------TTCCCT.CCHH CS
  Peptidase_M18  95 vetYGggiwetWldrdLsvaGrvlvkkkkeekleaklvnierPvlriPnlaiHLdrd.ineefkfneetelepilglaeeeeeekedkekknkhkk 189
                    ve YGgg w+tW+dr+Ls+aG v+vk++ ++   +klv++ rP+lriPnl iHL     + +f +n et+l+pilgl++          +      
     KOO24000.1 116 VEAYGGGLWHTWFDRELSLAGSVIVKEA-DGSFAKKLVHVRRPLLRIPNLCIHLTSAdERGKFAPNPETHLQPILGLIS----------E------ 194
                    ***************************9.799**********************8751456899*************65..........2...... PP

                    HHHHHHHHHHTS-CCCCCCCEEEEEE-S--EEETTTT-EEEESSHHHHHHHHHHHHHHCCCCHT-TTTS-SEEEEEEESSCCGTS-STTSGGCTHH CS
  Peptidase_M18 190 alleliaeelgvevedivdlelilvdaqkakivGiekeflfaprlDnkvscfaaleallesaedsleeedkvrivalfDnEEvGStsaqGadsnfl 285
                         +a el +e+  i d+e++l d+q+++i G+  e+l+aprlDn++ c+++l+al+  a++     d v +valfD+EEvGS+s +Ga +  +
     KOO24000.1 195 ---AVLAAELDCEIGAIFDFEMTLCDTQPSQIWGLRSELLSAPRLDNLLHCYTSLRALMVHADEAPPSADDVCMVALFDHEEVGSDSTTGAGGPIM 287
                    ...46899*****************************************************9998888899************************* PP

                    HHHHHHHHHHHCSTT...-HCHHHH...HC-EEEEE--EE---TTSGGGS- CS
  Peptidase_M18 286 eevlerisialkkse...afeeavl...akSlliSaDvahaihPnysskhe 330
                    +e ++r+s+ +   e   a  e +l    +S+liSaD aha+hPny++kh+
     KOO24000.1 288 SESMQRVSSCFAPDEphaA-AESLLmsnRRSFLISADAAHAVHPNYAEKHQ 337
                    ******9987766665543.3333347899********************7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (339 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       291  (0.0162307); expected 358.6 (0.02)
Passed bias filter:                      272  (0.015171); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.27s 00:00:00.68 Elapsed: 00:00:00.39
# Mc/sec: 2590.58
//
Query:       KOO24001.1  [L=484]
Description: hypothetical protein Ctob_001916 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.02   15.1   0.4      0.043   14.0   0.4    1.7  1  HALZ      Homeobox associated leucine zipper
       0.77    9.3   4.5       0.37   10.4   0.6    2.1  2  NRBF2     Nuclear receptor-binding factor 2, autophagy regula


Domain annotation for each model (and alignments):
>> HALZ  Homeobox associated leucine zipper
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.4   4.8e-06     0.043      14      41 ..     202     229 ..     187     239 .. 0.65

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 4.8e-06
        HALZ  14 YdaLksdydsLkkenekLkaelqeLkek 41 
                  +aL+ d+d L+++ ++L++  +eL+++
  KOO24001.1 202 VEALRDDHDGLRDDHDELRNDHHELRNM 229
                 5555555555555555555555555554 PP

>> NRBF2  Nuclear receptor-binding factor 2, autophagy regulator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.6   4.1e-05      0.37      79     131 ..     186     238 ..     182     271 .. 0.84
   2 ?   -0.2   0.1      0.07   6.3e+02      10      96 ..     312     401 ..     303     437 .. 0.61

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 4.1e-05
       NRBF2  79 tkleeqatkiadLkrlvelLlaenerLrkenkqLkaekaRLqkeplekeldvd 131
                  ++e q+ + ++L+  ve L ++ + Lr +  +L+ ++  L++  + ++   d
  KOO24001.1 186 ARFEAQRLEHEELRIAVEALRDDHDGLRDDHDELRNDHHELRNMVIANKAKFD 238
                 68999************************************999887755544 PP

  == domain 2  score: -0.2 bits;  conditional E-value: 0.07
       NRBF2  10 lqasakpsaeeaegqsapasqklspskekelkeiqgvldRdpDtLlf.lLqkrke..pteackgskapkDDktkleeqatkiadLkrlve 96 
                  +a+a ++a ++  ++ ++  + +    ++  +  +      D+Ll  + + r+e  ++ a+ ++ a k  k  l   + +ia L+  v 
  KOO24001.1 312 ARALAAAAAAQSGLADCTRIAREALDASRKATADAALQRVGIDSLLArQREARQEaaHAAAAAEAAAHKYSKAVLASVQPQIAGLQSAVG 401
                 555555555555555555555555555555555555555567887762345566632334445566678888888888888888887775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (484 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1127  (0.0628591); expected 358.6 (0.02)
Passed bias filter:                      392  (0.021864); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.52u 0.27s 00:00:00.79 Elapsed: 00:00:00.40
# Mc/sec: 3664.85
//
Query:       KOO24002.1  [L=131]
Description: hypothetical protein Ctob_001915 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (131 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       258  (0.0143901); expected 358.6 (0.02)
Passed bias filter:                      184  (0.0102627); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.26s 00:00:00.59 Elapsed: 00:00:00.38
# Mc/sec: 1043.95
//
Query:       KOO24003.1  [L=393]
Description: hypothetical protein Ctob_001914 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (393 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       560  (0.0312343); expected 358.6 (0.02)
Passed bias filter:                      391  (0.0218082); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.44u 0.22s 00:00:00.66 Elapsed: 00:00:00.36
# Mc/sec: 3272.73
//
Query:       KOO24004.1  [L=333]
Description: hypothetical protein Ctob_001913, partial [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    0.00014   21.8   0.0        8.9    6.3   0.0    4.4  5  DUF3924       Protein of unknown function (DUF3924)
  ------ inclusion threshold ------
      0.026   14.6   7.1       0.23   11.6   0.1    4.5  5  DUF2656       Protein of unknown function (DUF2656)
        4.4    7.2   6.1         36    4.3   0.0    4.2  6  Rho_RNA_bind  Rho termination factor, RNA-binding domain


Domain annotation for each model (and alignments):
>> DUF3924  Protein of unknown function (DUF3924)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.8   0.0    0.0044        26      19      47 ..      79     107 ..      62     112 .. 0.90
   2 !    3.9   0.0    0.0085        51      19      49 ..     162     192 ..     159     197 .. 0.91
   3 !    6.3   0.0    0.0015       8.9      19      49 ..     204     234 ..     201     239 .. 0.90
   4 ?   -1.2   0.0      0.33     2e+03      19      40 ..     246     267 ..     244     274 .. 0.81
   5 ?   -1.4   0.0      0.39   2.3e+03      19      37 ..     288     306 ..     286     312 .. 0.84

  Alignments for each domain:
  == domain 1  score: 4.8 bits;  conditional E-value: 0.0044
     DUF3924  19 lkqayekktGasisestlvqtliskefiq 47 
                 l q +e+  Gas+ +  lv  ++ +e +q
  KOO24004.1  79 LHQRHERCDGASLRDQDLVLGVVVREVLQ 107
                 8899*********************9998 PP

  == domain 2  score: 3.9 bits;  conditional E-value: 0.0085
     DUF3924  19 lkqayekktGasisestlvqtliskefiqai 49 
                 l q +e+  Gas+ +  lv  ++ +e  q i
  KOO24004.1 162 LHQRHERCDGASLRDQELVLFVVVRETTQRI 192
                 7899*****************9999999877 PP

  == domain 3  score: 6.3 bits;  conditional E-value: 0.0015
     DUF3924  19 lkqayekktGasisestlvqtliskefiqai 49 
                 l q +e+  Gas+ e  lv  +  +e  q i
  KOO24004.1 204 LHQRHERHDGASLREQDLVLGVFERETTQRI 234
                 7899***************999999998877 PP

  == domain 4  score: -1.2 bits;  conditional E-value: 0.33
     DUF3924  19 lkqayekktGasisestlvqtl 40 
                 l q +e++ G s+ +  lv  +
  KOO24004.1 246 LHQRHERREGPSLRDQDLVLGV 267
                 78999********999998665 PP

  == domain 5  score: -1.4 bits;  conditional E-value: 0.39
     DUF3924  19 lkqayekktGasisestlv 37 
                 l+q +e++ Ga + +  lv
  KOO24004.1 288 LQQRHERRDGARLHDRDLV 306
                 7899*******99888887 PP

>> DUF2656  Protein of unknown function (DUF2656)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.2   0.0      0.16   9.8e+02      73     101 ..       5      33 ..       2      38 .. 0.86
   2 ?   -1.2   0.0      0.33     2e+03      67      94 ..      73     100 ..      61     107 .. 0.81
   3 ?    2.1   0.1     0.031   1.8e+02      57      97 ..     188     228 ..     147     235 .. 0.72
   4 ?    0.2   0.0      0.12   7.1e+02      67      98 ..     240     271 ..     226     279 .. 0.77
   5 ?   11.6   0.1   3.8e-05      0.23      61     113 ..     276     325 ..     268     328 .. 0.87

  Alignments for each domain:
  == domain 1  score: -0.2 bits;  conditional E-value: 0.16
     DUF2656  73 aqkRkelqkgeeaapdiLilgglktspar 101
                 +qkR++l+ g + + + L+lg  ++ p r
  KOO24004.1   5 VQKRQRLRDGPSLRDQDLVLGDVREVPQR 33 
                 699****99************99998866 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 0.33
     DUF2656  67 ecakalaqkRkelqkgeeaapdiLilgg 94 
                 + ++a  ++R+e+  g++ + + L+lg+
  KOO24004.1  73 LAIRAALHQRHERCDGASLRDQDLVLGV 100
                 5678888889999999999999999997 PP

  == domain 3  score: 2.1 bits;  conditional E-value: 0.031
     DUF2656  57 sklspeqvgeecakalaqkRkelqkgeeaapdiLilgglkt 97 
                  +   ++v  + ++a  ++R+e++ g++ +++ L+lg+   
  KOO24004.1 188 TTQRIRRVLLLAIRAALHQRHERHDGASLREQDLVLGVFER 228
                 444555566667899999999999999*9**99**998654 PP

  == domain 4  score: 0.2 bits;  conditional E-value: 0.12
     DUF2656  67 ecakalaqkRkelqkgeeaapdiLilgglkts 98 
                 + +++  ++R+e+++g + + + L+lg+ +  
  KOO24004.1 240 LAIRTALHQRHERREGPSLRDQDLVLGVSQRE 271
                 456777788999999999********987654 PP

  == domain 5  score: 11.6 bits;  conditional E-value: 3.8e-05
     DUF2656  61 peqvgeecakalaqkRkelqkgeeaapdiLilgglktsparssapdaLqeGeW 113
                 p+++  ++++a  q+R+e++ g++ +   L+lg+ +++p r+     L++G+W
  KOO24004.1 276 PRRLLLLVIRAALQQRHERRDGARLHDRDLVLGVYRKAPQRAR---RLRPGRW 325
                 777888899***************************9987754...5899999 PP

>> Rho_RNA_bind  Rho termination factor, RNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.8   0.0     0.038   2.2e+02      38      58 ..      16      36 ..       8      44 .. 0.83
   2 ?    0.5   0.0     0.092   5.5e+02      41      65 ..      52      76 ..      47      82 .. 0.83
   3 ?   -3.4   0.0       1.6   9.3e+03      38      51 ..      90     103 ..      89     116 .. 0.66
   4 ?    4.3   0.0     0.006        36      39      65 ..     133     159 ..     131     166 .. 0.87
   5 ?   -2.6   0.0      0.84     5e+03      38      57 ..     215     233 ..     214     244 .. 0.65
   6 ?   -3.4   0.0       1.5   9.1e+03      40      56 ..     301     317 ..     299     326 .. 0.71

  Alignments for each domain:
  == domain 1  score: 1.8 bits;  conditional E-value: 0.038
                  T--TT-EEEEEEE---SSS-S CS
  Rho_RNA_bind 38 gLrtGDaveGkvrppkereky 58
                   Lr  D v G vr+  +r + 
    KOO24004.1 16 SLRDQDLVLGDVREVPQRTRR 36
                  59999********98766665 PP

  == domain 2  score: 0.5 bits;  conditional E-value: 0.092
                  TT-EEEEEEE---SSS-SEEECEEC CS
  Rho_RNA_bind 41 tGDaveGkvrppkerekynaLlrve 65
                  + D v G vr+  +r +   Ll ++
    KOO24004.1 52 RRDLVLGDVREVPQRTRRVLLLAIR 76
                  6699******998888888888775 PP

  == domain 3  score: -3.4 bits;  conditional E-value: 1.6
                   T--TT-EEEEEEE- CS
  Rho_RNA_bind  38 gLrtGDaveGkvrp 51 
                    Lr  D v G v  
    KOO24004.1  90 SLRDQDLVLGVVVR 103
                   58889999987644 PP

  == domain 4  score: 4.3 bits;  conditional E-value: 0.006
                   --TT-EEEEEEE---SSS-SEEECEEC CS
  Rho_RNA_bind  39 LrtGDaveGkvrppkerekynaLlrve 65 
                   L   D v G vr++k+r +   Ll ++
    KOO24004.1 133 LSDQDLVLGDVREEKQRTRRDILLAIR 159
                   56679**************99999886 PP

  == domain 5  score: -2.6 bits;  conditional E-value: 0.84
                   T--TT-EEEEEEE---SSS- CS
  Rho_RNA_bind  38 gLrtGDaveGkvrppkerek 57 
                    Lr+ D v G    ++ +++
    KOO24004.1 215 SLREQDLVLGVFERET-TQR 233
                   5899999999876654.333 PP

  == domain 6  score: -3.4 bits;  conditional E-value: 1.5
                   -TT-EEEEEEE---SSS CS
  Rho_RNA_bind  40 rtGDaveGkvrppkere 56 
                      D v G  r++ +r 
    KOO24004.1 301 HDRDLVLGVYRKAPQRA 317
                   56688899888875544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (333 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       398  (0.0221987); expected 358.6 (0.02)
Passed bias filter:                      208  (0.0116013); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.47u 0.25s 00:00:00.72 Elapsed: 00:00:00.41
# Mc/sec: 2430.97
//
Query:       KOO24005.1  [L=1350]
Description: vacuolar protein 8 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.9e-89  291.3  63.4    2.5e-09   36.9   0.2   18.9 19  Arm              Armadillo/beta-catenin-like repeat
    2.9e-20   72.4  51.3     0.0002   21.8   2.1   11.5 12  HEAT_EZ          HEAT-like repeat
    7.6e-15   54.7  30.5      0.019   14.9   0.2    9.4  9  Atx10homo_assoc  Spinocerebellar ataxia type 10 protein domai
    0.00062   19.9   1.6         12    6.1   0.0    5.9  7  CRS1_YhbY        CRS1 / YhbY (CRM) domain
     0.0092   14.6   0.1        1.3    7.4   0.0    3.5  3  Adaptin_N        Adaptin N terminal region
  ------ inclusion threshold ------
       0.01   15.5   0.2        2.5    7.8   0.0    2.6  2  PreAtp-grasp     Pre ATP-grasp domain
       0.02   15.0   0.5          4    7.6   0.1    2.5  2  Sigma70_r1_1     Sigma-70 factor, region 1.1
        0.2   12.0  22.2         33    5.1   0.4   10.0 13  HEAT             HEAT repeat
       0.21   11.0  15.6        3.7    6.9   1.7    6.3  5  Arm_2            Armadillo-like


Domain annotation for each model (and alignments):
>> Arm  Armadillo/beta-catenin-like repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.0       1.1   2.2e+03      15      30 ..     244     259 ..     241     260 .. 0.84
   2 !   18.1   0.4   9.9e-07     0.002       7      40 ..     341     374 ..     336     375 .. 0.93
   3 !   36.9   0.2   1.2e-12   2.5e-09       1      40 [.     376     415 ..     376     416 .. 0.97
   4 !   19.4   0.1   3.8e-07   0.00076       1      37 [.     418     454 ..     418     458 .. 0.94
   5 !   13.1   0.0   3.8e-05     0.076       2      37 ..     461     496 ..     460     500 .. 0.91
   6 !   14.2   0.0   1.7e-05     0.033       1      36 [.     502     537 ..     502     540 .. 0.93
   7 ?    5.3   0.0     0.011        21       3      40 ..     545     582 ..     544     583 .. 0.80
   8 !   32.0   0.3   4.1e-11   8.2e-08       1      41 []     585     625 ..     585     625 .. 0.95
   9 ?    5.4   0.1      0.01        21       5      41 .]     630     667 ..     627     667 .. 0.64
  10 ?    2.7   0.1     0.073   1.4e+02       3      28 ..     670     695 ..     669     701 .. 0.88
  11 ?   -1.5   0.0       1.5     3e+03      14      29 ..     906     921 ..     904     923 .. 0.86
  12 !   18.3   0.2   8.8e-07    0.0017       2      40 ..    1007    1045 ..    1006    1046 .. 0.94
  13 !   29.5   0.1   2.5e-10     5e-07       3      40 ..    1049    1086 ..    1047    1087 .. 0.89
  14 !   31.9   0.1   4.6e-11   9.1e-08       1      40 [.    1089    1128 ..    1089    1129 .. 0.96
  15 !   16.8   0.0   2.7e-06    0.0053       7      41 .]    1135    1170 ..    1131    1170 .. 0.90
  16 !   32.0   0.1   4.4e-11   8.7e-08       1      40 [.    1172    1211 ..    1172    1212 .. 0.96
  17 !   11.9   0.1     9e-05      0.18       3      40 ..    1215    1253 ..    1214    1254 .. 0.92
  18 !   23.9   0.3   1.5e-08   2.9e-05       1      40 [.    1256    1295 ..    1256    1296 .. 0.95
  19 !   13.0   0.0   3.9e-05     0.078       3      40 ..    1299    1336 ..    1297    1337 .. 0.92

  Alignments for each domain:
  == domain 1  score: -1.1 bits;  conditional E-value: 1.1
                 HHHHHHTTTSSHHHHH CS
         Arm  15 ppLvrLLssedeevqe 30 
                 + L ++L+s+d++v+ 
  KOO24005.1 244 DELYAMLDSPDVSVTN 259
                 67899********975 PP

  == domain 2  score: 18.1 bits;  conditional E-value: 9.9e-07
                 HHHHTTHHHHHHHHTTTSSHHHHHHHHHHHHHHT CS
         Arm   7 avieaGavppLvrLLssedeevqeeAawALsNLa 40 
                 a+ + G++ pLv+LL+ +d+  + eAa+AL+ La
  KOO24005.1 341 AIARVGGIVPLVALLTAQDPAARAEAARALRSLA 374
                 78899**************************998 PP

  == domain 3  score: 36.9 bits;  conditional E-value: 1.2e-12
                 SHHHHHHHHHTTHHHHHHHHTTTSSHHHHHHHHHHHHHHT CS
         Arm   1 nsenkdavieaGavppLvrLLssedeevqeeAawALsNLa 40 
                 n enk  +++aGa+ pLv+LL+s+ ++ +e+Aa+AL+NLa
  KOO24005.1 376 NAENKVSIVQAGAIAPLVTLLKSGTDDQKEQAAGALRNLA 415
                 679************************************8 PP

  == domain 4  score: 19.4 bits;  conditional E-value: 3.8e-07
                 SHHHHHHHHHTTHHHHHHHHTTTSSHHHHHHHHHHHH CS
         Arm   1 nsenkdavieaGavppLvrLLssedeevqeeAawALs 37 
                 n en  ++ +aGa  pLv+L +s+ ++ +e+Aa AL+
  KOO24005.1 418 NAENQVLIAQAGAFAPLVTLVQSGTDGQKENAADALR 454
                 67999*******************************8 PP

  == domain 5  score: 13.1 bits;  conditional E-value: 3.8e-05
                 HHHHHHHHHTTHHHHHHHHTTTSSHHHHHHHHHHHH CS
         Arm   2 senkdavieaGavppLvrLLssedeevqeeAawALs 37 
                  en  +  +aGa+ pLv+L +s+ ++ +e Aa AL+
  KOO24005.1 461 AENQVLFAQAGAIVPLVTLVKSGTDSQKEYAADALR 496
                 67888889***************************8 PP

  == domain 6  score: 14.2 bits;  conditional E-value: 1.7e-05
                 SHHHHHHHHHTTHHHHHHHHTTTSSHHHHHHHHHHH CS
         Arm   1 nsenkdavieaGavppLvrLLssedeevqeeAawAL 36 
                 n+en  ++ +aGa+ pLv+L +s+ ++ +  Aa+AL
  KOO24005.1 502 NEENQFLIAQAGAIAPLVTLVQSGTDRQKDIAAGAL 537
                 6789999*****************999999999998 PP

  == domain 7  score: 5.3 bits;  conditional E-value: 0.011
                 HHHHHHHHTTHHH.HHHHHTTTSSHHHHHHHHHHHHHHT CS
         Arm   3 enkdavieaGavp.pLvrLLssedeevqeeAawALsNLa 40 
                 enk ++ +aGa+  pLv+LLs +  + +e Aa+AL NLa
  KOO24005.1 545 ENKVLIAQAGAITaPLVTLLS-GTGGQKEKAAGALKNLA 582
                 799999999999615555555.99999999*******98 PP

  == domain 8  score: 32.0 bits;  conditional E-value: 4.1e-11
                 SHHHHHHHHHTTHHHHHHHHTTTSSHHHHHHHHHHHHHHTT CS
         Arm   1 nsenkdavieaGavppLvrLLssedeevqeeAawALsNLaa 41 
                 n +n  ++ +aGa+ pLv+L +s+ ++ +e+Aa+AL+NLa+
  KOO24005.1 585 NAKNQVLIAQAGAIAPLVTLVQSGTDGQKENAAGALRNLAD 625
                 5689999********************************95 PP

  == domain 9  score: 5.4 bits;  conditional E-value: 0.01
                 HHHHHHTTHHH.HHHHHTTTSSHHHHHHHHHHHHHHTT CS
         Arm   5 kdavieaGavp.pLvrLLssedeevqeeAawALsNLaa 41 
                   ++ +aGa+  pLv+L +s+  + +e Aa+AL+NLa+
  KOO24005.1 630 QVLIAQAGAITaPLVTLEQSGTAREKEIAAGALRNLAD 667
                 5555666666413444444777777899********95 PP

  == domain 10  score: 2.7 bits;  conditional E-value: 0.073
                 HHHHHHHHTTHHHHHHHHTTTSSHHH CS
         Arm   3 enkdavieaGavppLvrLLssedeev 28 
                 en  ++ +aGa+   ++LL+ +d++v
  KOO24005.1 670 ENQVLIAQAGAISEALALLDPGDVGV 695
                 789999*************9888776 PP

  == domain 11  score: -1.5 bits;  conditional E-value: 1.5
                 HHHHHHHTTTSSHHHH CS
         Arm  14 vppLvrLLssedeevq 29 
                 +++L ++L+s+d +v+
  KOO24005.1 906 LDQLYAMLESPDIQVT 921
                 68899*******9997 PP

  == domain 12  score: 18.3 bits;  conditional E-value: 8.8e-07
                  HHHHHHHHHTTHHHHHHHHTTTSSHHHHHHHHHHHHHHT CS
         Arm    2 senkdavieaGavppLvrLLssedeevqeeAawALsNLa 40  
                  +e + a+ +a ++ pLv+LL+ +d+  + eAa+AL+ La
  KOO24005.1 1007 NESRVAIARARGIVPLVALLTAQDPAARAEAARALRSLA 1045
                  577899******************************998 PP

  == domain 13  score: 29.5 bits;  conditional E-value: 2.5e-10
                  HHHHHHHHTTHHHHHHHHTTTSSHHHHHHHHHHHHHHT CS
         Arm    3 enkdavieaGavppLvrLLssedeevqeeAawALsNLa 40  
                  enk  + +aGa+ pLv+LL+s+ ++ +e+Aa+AL+NLa
  KOO24005.1 1049 ENKVSIEQAGAIAPLVTLLKSGTDDQKEQAAGALRNLA 1086
                  66666669*****************************8 PP

  == domain 14  score: 31.9 bits;  conditional E-value: 4.6e-11
                  SHHHHHHHHHTTHHHHHHHHTTTSSHHHHHHHHHHHHHHT CS
         Arm    1 nsenkdavieaGavppLvrLLssedeevqeeAawALsNLa 40  
                  n en + + +aGa+ pLv+L +s+ ++ +e+Aa+AL+NLa
  KOO24005.1 1089 NAENQEKIAQAGAIAPLVTLVQSGTDGQKENAAGALRNLA 1128
                  67999**********************************8 PP

  == domain 15  score: 16.8 bits;  conditional E-value: 2.7e-06
                  HHH.HTTHHHHHHHHTTTSSHHHHHHHHHHHHHHTT CS
         Arm    7 avi.eaGavppLvrLLssedeevqeeAawALsNLaa 41  
                  ++i +aGa+ pLv+L +s+ ++ +e Aa++L+ Laa
  KOO24005.1 1135 VLIeQAGAIVPLVTLVKSGTDSQKEYAAGTLRSLAA 1170
                  45569****************************996 PP

  == domain 16  score: 32.0 bits;  conditional E-value: 4.4e-11
                  SHHHHHHHHHTTHHHHHHHHTTTSSHHHHHHHHHHHHHHT CS
         Arm    1 nsenkdavieaGavppLvrLLssedeevqeeAawALsNLa 40  
                  n en + + +aGa+ pLv+L +s+ ++ +e+Aa+AL+NLa
  KOO24005.1 1172 NAENQEKIAQAGAIAPLVTLVQSGTDRQKENAAGALRNLA 1211
                  67999**********************************8 PP

  == domain 17  score: 11.9 bits;  conditional E-value: 9e-05
                  HHHHHHHHTTHH.HHHHHHTTTSSHHHHHHHHHHHHHHT CS
         Arm    3 enkdavieaGav.ppLvrLLssedeevqeeAawALsNLa 40  
                  enk ++ +aGa+  pLv+LL+s+  + +e Aa+AL NLa
  KOO24005.1 1215 ENKVLIAQAGAItAPLVTLLKSGTGGQKEKAAAALKNLA 1253
                  799999999999569***********************8 PP

  == domain 18  score: 23.9 bits;  conditional E-value: 1.5e-08
                  SHHHHHHHHHTTHHHHHHHHTTTSSHHHHHHHHHHHHHHT CS
         Arm    1 nsenkdavieaGavppLvrLLssedeevqeeAawALsNLa 40  
                  n +n  ++ +aGa+ pLv+L +s+ ++ +  Aa+AL+NLa
  KOO24005.1 1256 NAKNQVLIAQAGAIAPLVTLVQSGTDGQKDYAAGALQNLA 1295
                  5689999********************************8 PP

  == domain 19  score: 13.0 bits;  conditional E-value: 3.9e-05
                  HHHHHHHHTTHHHHHHHHTTTSSHHHHHHHHHHHHHHT CS
         Arm    3 enkdavieaGavppLvrLLssedeevqeeAawALsNLa 40  
                  en  +  +aGa+ pLv++ +s+ ++ +  Aa+AL+NLa
  KOO24005.1 1299 ENQVLFAQAGAIAPLVKMEQSGTDRQKDYAAGALQNLA 1336
                  6777778******************************8 PP

>> HEAT_EZ  HEAT-like repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.4   2.3   1.3e-07   0.00026       2      55 .]     361     414 ..     360     414 .. 0.95
   2 !   10.6   0.2   0.00032      0.64       3      54 ..     445     497 ..     443     498 .. 0.94
   3 ?    2.1   0.0      0.15   2.9e+02      26      52 ..     511     537 ..     501     537 .. 0.92
   4 !    9.5   0.3   0.00068       1.4       4      55 .]     571     623 ..     569     623 .. 0.85
   5 ?    0.6   0.2      0.43   8.5e+02       4      55 .]     655     665 ..     639     692 .. 0.55
   6 ?   -1.9   0.4       2.6   5.1e+03       2      18 ..     989    1005 ..     988    1027 .. 0.70
   7 !   21.8   2.1   9.9e-08    0.0002       2      55 .]    1032    1085 ..    1031    1085 .. 0.95
   8 ?    5.6   0.0     0.012        24      25      55 .]    1097    1127 ..    1086    1127 .. 0.85
   9 !   12.3   0.0   9.2e-05      0.18       3      55 .]    1116    1168 ..    1114    1168 .. 0.94
  10 !   13.7   0.1   3.3e-05     0.066       4      55 .]    1158    1210 ..    1155    1210 .. 0.87
  11 !    9.4   0.4   0.00075       1.5       4      55 .]    1242    1294 ..    1240    1294 .. 0.87
  12 ?    2.8   0.0     0.086   1.7e+02      27      55 .]    1307    1335 ..    1303    1335 .. 0.89

  Alignments for each domain:
  == domain 1  score: 21.4 bits;  conditional E-value: 1.3e-07
     HEAT_EZ   2 rvRraAawaLGrlaggepellqplvpeilpaLlalLnddsdeVRaaAagaLgnl 55 
                 + R+ Aa+aL +la ++ + ++ ++  ++++L+ lL++  d+ +++AagaL+nl
  KOO24005.1 361 AARAEAARALRSLAINAENKVSIVQAGAIAPLVTLLKSGTDDQKEQAAGALRNL 414
                 5699******88****************************************97 PP

  == domain 2  score: 10.6 bits;  conditional E-value: 0.00032
     HEAT_EZ   3 vRraAawaLGrlaggepellqp.lvpeilpaLlalLnddsdeVRaaAagaLgn 54 
                 ++++Aa aL +la+ ++e + + ++  ++ +L+ l ++  d+ +++Aa aL+ 
  KOO24005.1 445 QKENAADALRCLAFKNAENQVLfAQAGAIVPLVTLVKSGTDSQKEYAADALRC 497
                 689******88****************************************86 PP

  == domain 3  score: 2.1 bits;  conditional E-value: 0.15
     HEAT_EZ  26 vpeilpaLlalLnddsdeVRaaAagaL 52 
                 +  ++++L+ l ++  d+ +  AagaL
  KOO24005.1 511 QAGAIAPLVTLVQSGTDRQKDIAAGAL 537
                 567899********************9 PP

  == domain 4  score: 9.5 bits;  conditional E-value: 0.00068
     HEAT_EZ   4 RraAawaLGrlaggepellqp.lvpeilpaLlalLnddsdeVRaaAagaLgnl 55 
                 ++ Aa aL +la +++  + + ++  ++++L+ l ++  d  +++AagaL+nl
  KOO24005.1 571 KEKAAGALKNLAYNNAKNQVLiAQAGAIAPLVTLVQSGTDGQKENAAGALRNL 623
                 5678889988666666666666*****************************97 PP

  == domain 5  score: 0.6 bits;  conditional E-value: 0.43
     HEAT_EZ   4 RraAawaLGrlaggepellqplvpeilpaLlalLnddsdeVRaaAagaLgnl 55 
                 ++ Aa aL                                         +nl
  KOO24005.1 655 KEIAAGAL-----------------------------------------RNL 665
                 34444444.........................................433 PP

  == domain 6  score: -1.9 bits;  conditional E-value: 2.6
     HEAT_EZ    2 rvRraAawaLGrlagge 18  
                  +vR++ a a G+la ++
  KOO24005.1  989 QVRNGSADAAGALADMR 1005
                  68999999999965443 PP

  == domain 7  score: 21.8 bits;  conditional E-value: 9.9e-08
     HEAT_EZ    2 rvRraAawaLGrlaggepellqplvpeilpaLlalLnddsdeVRaaAagaLgnl 55  
                  + R+ Aa+aL +la ++ + ++ ++  ++++L+ lL++  d+ +++AagaL+nl
  KOO24005.1 1032 AARAEAARALRSLAINAENKVSIEQAGAIAPLVTLLKSGTDDQKEQAAGALRNL 1085
                  5699******88****************************************97 PP

  == domain 8  score: 5.6 bits;  conditional E-value: 0.012
     HEAT_EZ   25 lvpeilpaLlalLnddsdeVRaaAagaLgnl 55  
                  ++  ++++L+ l ++  d  +++AagaL+nl
  KOO24005.1 1097 AQAGAIAPLVTLVQSGTDGQKENAAGALRNL 1127
                  677899***********************97 PP

  == domain 9  score: 12.3 bits;  conditional E-value: 9.2e-05
     HEAT_EZ    3 vRraAawaLGrlaggepellqplvpeilpaLlalLnddsdeVRaaAagaLgnl 55  
                  ++++Aa aL +la+  ++++  ++  ++ +L+ l ++  d+ +++Aag+L+ l
  KOO24005.1 1116 QKENAAGALRNLAFIPKNQVLIEQAGAIVPLVTLVKSGTDSQKEYAAGTLRSL 1168
                  6899999**88***************************************976 PP

  == domain 10  score: 13.7 bits;  conditional E-value: 3.3e-05
     HEAT_EZ    4 RraAawaLGrlaggepellqp.lvpeilpaLlalLnddsdeVRaaAagaLgnl 55  
                  ++ Aa +L +la+ ++e +++ ++  ++++L+ l ++  d+ +++AagaL+nl
  KOO24005.1 1158 KEYAAGTLRSLAAKNAENQEKiAQAGAIAPLVTLVQSGTDRQKENAAGALRNL 1210
                  6678888866778888888888*****************************97 PP

  == domain 11  score: 9.4 bits;  conditional E-value: 0.00075
     HEAT_EZ    4 RraAawaLGrlaggepellqp.lvpeilpaLlalLnddsdeVRaaAagaLgnl 55  
                  ++ Aa+aL +la +++  + + ++  ++++L+ l ++  d  + +AagaL nl
  KOO24005.1 1242 KEKAAAALKNLAYNNAKNQVLiAQAGAIAPLVTLVQSGTDGQKDYAAGALQNL 1294
                  6789999999666666666666****************************997 PP

  == domain 12  score: 2.8 bits;  conditional E-value: 0.086
     HEAT_EZ   27 peilpaLlalLnddsdeVRaaAagaLgnl 55  
                    ++++L+++ ++  d+ + +AagaL nl
  KOO24005.1 1307 AGAIAPLVKMEQSGTDRQKDYAAGALQNL 1335
                  56799999999999************997 PP

>> Atx10homo_assoc  Spinocerebellar ataxia type 10 protein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.1   0.3   0.00063       1.3      45      69 ..     403     427 ..     362     431 .. 0.81
   2 !   14.9   0.2   9.8e-06     0.019       8      70 ..     452     512 ..     445     524 .. 0.85
   3 !    9.9   0.6   0.00036      0.72       8      69 ..     577     635 ..     571     652 .. 0.70
   4 ?   -0.5   0.0      0.65   1.3e+03      46      69 ..     655     677 ..     647     683 .. 0.85
   5 !   11.6   0.3    0.0001      0.21      45      70 ..    1074    1099 ..    1045    1107 .. 0.83
   6 !   11.0   0.5   0.00016      0.33      46      70 ..    1075    1099 ..    1074    1143 .. 0.82
   7 !   11.2   0.1   0.00015      0.29      42      70 ..    1154    1182 ..    1124    1208 .. 0.82
   8 ?   -1.3   0.0       1.1   2.2e+03      45      69 ..    1199    1222 ..    1190    1237 .. 0.80
   9 !   10.7   0.3    0.0002       0.4      46      70 ..    1242    1266 ..    1232    1279 .. 0.90

  Alignments for each domain:
  == domain 1  score: 9.1 bits;  conditional E-value: 0.00063
  Atx10homo_assoc  45 irewailairnLlegneenqelvae 69 
                       +e+a  a+rnL   n+enq l+a+
       KOO24005.1 403 QKEQAAGALRNLALRNAENQVLIAQ 427
                      5899*******************97 PP

  == domain 2  score: 14.9 bits;  conditional E-value: 9.8e-06
  Atx10homo_assoc   8 llgnlvyknkevqdkvreldgleliLsqcniDdnnPfirewailairnLlegneenqelvaeL 70 
                       l  l++kn e+q  + + +++  + + ++  +  +  +e+a  a+r L  +neenq l+a+ 
       KOO24005.1 452 ALRCLAFKNAENQVLFAQAGAIVPLVTLVK--SGTDSQKEYAADALRCLAYNNEENQFLIAQA 512
                      566799***************999876555..566778**********************985 PP

  == domain 3  score: 9.9 bits;  conditional E-value: 0.00036
  Atx10homo_assoc   8 llgnlvyknkevqdkvreldgleliLsqcniDdnnPfirewailairnLlegneenqelvae 69 
                       l nl+y+n ++q  + + ++++ + +   +++  +  +e a  a+rnL  + +enq l+a+
       KOO24005.1 577 ALKNLAYNNAKNQVLIAQAGAIAPLVTL--VQSGTDGQKENAAGALRNLA-DIAENQVLIAQ 635
                      4567778888888888888887777644..45566677778888888864.56777777776 PP

  == domain 4  score: -0.5 bits;  conditional E-value: 0.65
  Atx10homo_assoc  46 rewailairnLlegneenqelvae 69 
                      +e a  a+rnL  + +enq l+a+
       KOO24005.1 655 KEIAAGALRNLA-DIAENQVLIAQ 677
                      6889999***85.6899**99997 PP

  == domain 5  score: 11.6 bits;  conditional E-value: 0.0001
  Atx10homo_assoc   45 irewailairnLlegneenqelvaeL 70  
                        +e+a  a+rnL  +n+enqe +a+ 
       KOO24005.1 1074 QKEQAAGALRNLAVKNAENQEKIAQA 1099
                       4899*******************985 PP

  == domain 6  score: 11.0 bits;  conditional E-value: 0.00016
  Atx10homo_assoc   46 rewailairnLlegneenqelvaeL 70  
                       +e+a  a+rnL  +n+enqe +a+ 
       KOO24005.1 1075 KEQAAGALRNLAVKNAENQEKIAQA 1099
                       6888889999999999999999875 PP

  == domain 7  score: 11.2 bits;  conditional E-value: 0.00015
  Atx10homo_assoc   42 nPfirewailairnLlegneenqelvaeL 70  
                        +  +e+a  ++r L  +n+enqe +a+ 
       KOO24005.1 1154 TDSQKEYAAGTLRSLAAKNAENQEKIAQA 1182
                       45679*********************985 PP

  == domain 8  score: -1.3 bits;  conditional E-value: 1.1
  Atx10homo_assoc   45 irewailairnLlegneenqelvae 69  
                        +e a  a+rnL e  +en+ l+a+
       KOO24005.1 1199 QKENAAGALRNLAE-IAENKVLIAQ 1222
                       5899999****976.5788888887 PP

  == domain 9  score: 10.7 bits;  conditional E-value: 0.0002
  Atx10homo_assoc   46 rewailairnLlegneenqelvaeL 70  
                       +e a  a++nL  +n++nq l+a+ 
       KOO24005.1 1242 KEKAAAALKNLAYNNAKNQVLIAQA 1266
                       899*******************985 PP

>> CRS1_YhbY  CRS1 / YhbY (CRM) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.8   0.0    0.0077        15       5      35 ..     366     396 ..     363     402 .. 0.88
   2 ?   -1.2   0.0       1.2   2.4e+03       7      35 ..     409     438 ..     404     440 .. 0.82
   3 ?   -3.0   0.0       4.5   8.9e+03       8      35 ..     577     605 ..     572     607 .. 0.75
   4 ?   -2.2   0.0       2.4   4.8e+03       8      34 ..     661     687 ..     658     689 .. 0.85
   5 !    6.1   0.0     0.006        12       5      35 ..    1037    1067 ..    1034    1073 .. 0.88
   6 ?   -1.1   0.0       1.1   2.2e+03       7      27 ..    1205    1225 ..    1200    1235 .. 0.81
   7 ?   -1.6   0.0       1.5   3.1e+03       3      35 ..    1243    1276 ..    1242    1278 .. 0.80

  Alignments for each domain:
  == domain 1  score: 5.8 bits;  conditional E-value: 0.0077
   CRS1_YhbY   5 elrrLrhlairlkpkvkiGkaGvtkevvdei 35 
                   r+Lr+lai+ ++kv i +aG    +v ++
  KOO24005.1 366 AARALRSLAINAENKVSIVQAGAIAPLVTLL 396
                 5799******************998888776 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 1.2
   CRS1_YhbY   7 rrLrhlairl.kpkvkiGkaGvtkevvdei 35 
                  +Lr+la r  +++v i +aG +  +v ++
  KOO24005.1 409 GALRNLALRNaENQVLIAQAGAFAPLVTLV 438
                 57999999876999*******999988876 PP

  == domain 3  score: -3.0 bits;  conditional E-value: 4.5
   CRS1_YhbY   8 rLrhlairl.kpkvkiGkaGvtkevvdei 35 
                 +L++la +  k++v i +aG    +v ++
  KOO24005.1 577 ALKNLAYNNaKNQVLIAQAGAIAPLVTLV 605
                 6777775544999*******988888776 PP

  == domain 4  score: -2.2 bits;  conditional E-value: 2.4
   CRS1_YhbY   8 rLrhlairlkpkvkiGkaGvtkevvde 34 
                 +Lr+la   +++v i +aG   e +++
  KOO24005.1 661 ALRNLADIAENQVLIAQAGAISEALAL 687
                 699999999**********98887765 PP

  == domain 5  score: 6.1 bits;  conditional E-value: 0.006
   CRS1_YhbY    5 elrrLrhlairlkpkvkiGkaGvtkevvdei 35  
                    r+Lr+lai+ ++kv i +aG    +v ++
  KOO24005.1 1037 AARALRSLAINAENKVSIEQAGAIAPLVTLL 1067
                  5799******************998888776 PP

  == domain 6  score: -1.1 bits;  conditional E-value: 1.1
   CRS1_YhbY    7 rrLrhlairlkpkvkiGkaGv 27  
                   +Lr+la   ++kv i +aG 
  KOO24005.1 1205 GALRNLAEIAENKVLIAQAGA 1225
                  579***************995 PP

  == domain 7  score: -1.6 bits;  conditional E-value: 1.5
   CRS1_YhbY    3 ekelrrLrhlairl.kpkvkiGkaGvtkevvdei 35  
                  ek  ++L++la +  k++v i +aG    +v ++
  KOO24005.1 1243 EKAAAALKNLAYNNaKNQVLIAQAGAIAPLVTLV 1276
                  6777889999866559*********988888776 PP

>> Adaptin_N  Adaptin N terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.6   0.0     0.038        77     351     415 ..     357     425 ..     350     428 .. 0.82
   2 ?   -0.5   0.0      0.17   3.3e+02     220     281 ..     438     504 ..     366     512 .. 0.65
   3 !    7.4   0.0   0.00067       1.3     351     417 ..    1028    1098 ..    1021    1130 .. 0.85

  Alignments for each domain:
  == domain 1  score: 1.6 bits;  conditional E-value: 0.038
                 SXXHHHHHHHHHHHHHHHHHS....CCHHHHHHHHHHHHHTTXXHHHHHHHHHHHHHHHHHSTTTSTTC CS
   Adaptin_N 351 vadedfksklvkaIgrlaekf....atdaewvldvllellslsgesvkdeivevirdliqkvpelheei 415
                 ++d+  ++++++a+++la++       +++  ++ l+ ll++  +  k++++ ++r+l  +++e++  i
  KOO24005.1 357 AQDPAARAEAARALRSLAINAenkvSIVQAGAIAPLVTLLKSGTDDQKEQAAGALRNLALRNAENQVLI 425
                 689999*************9944434445667899******999999**********999999987665 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 0.17
                 --SSHHHH..HHHHHHHCGGCG..CSSCHHHHHHHHHCC........HCCCCSTHHHCCHHCHHHHHHSSCC CS
   Adaptin_N 220 arqepeerskkellesllnllq..ssnnaVlletvnliv........elapknelivlavnaLvrllsskde 281
                 +++ ++ +  ke   + l +l+  ++ n Vl++ + +iv          +++    + a+ aL  l  +++e
  KOO24005.1 438 VQSGTDGQ--KENAADALRCLAfkNAENQVLFAQAGAIVplvtlvksGTDSQK---EYAADALRCLAYNNEE 504
                 33344444..5666777777777899999999999999876666533223333...3466666665555555 PP

  == domain 3  score: 7.4 bits;  conditional E-value: 0.00067
                  SXXHHHHHHHHHHHHHHHHHS....CCHHHHHHHHHHHHHTTXXHHHHHHHHHHHHHHHHHSTTTSTTCHH CS
   Adaptin_N  351 vadedfksklvkaIgrlaekf....atdaewvldvllellslsgesvkdeivevirdliqkvpelheeiie 417 
                  ++d+  ++++++a+++la++       +++  ++ l+ ll++  +  k++++ ++r+l +k++e++e+i++
  KOO24005.1 1028 AQDPAARAEAARALRSLAINAenkvSIEQAGAIAPLVTLLKSGTDDQKEQAAGALRNLAVKNAENQEKIAQ 1098
                  68999***************966544556789*********9999**********************9954 PP

>> PreAtp-grasp  Pre ATP-grasp domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.8   0.0      0.01        20      48     118 ..     185     255 ..     176     284 .. 0.75
   2 ?    7.8   0.0    0.0012       2.5      43     116 ..     842     916 ..     836     923 .. 0.89

  Alignments for each domain:
  == domain 1  score: 4.8 bits;  conditional E-value: 0.01
  PreAtp-grasp  48 apeeeFlrYvtaltgvdreslrvlvppagrlgsdlLsperlldpelverlraavaerpveellpllpdasv 118
                   +  ++F + ++a ++++ +++  lvp + ++++  + p   +++ +v +l+a+va+++ +el+++l +  v
    KOO24005.1 185 TYVTRFWTLLEAWISMQMATIDGLVPAPREKRRCDIVPIHHASEVTVLELEALVAGKSLDELYAMLDSPDV 255
                   4567888999999999999999999998888888888999999999999***************9855443 PP

  == domain 2  score: 7.8 bits;  conditional E-value: 0.0012
  PreAtp-grasp  43 lvlp.vapeeeFlrYvtaltgvdreslrvlvppagrlgsdlLsperlldpelverlraavaerpveellpllpda 116
                   l+l+ ++ +++F + ++a ++++ +++  lvp + ++++  + p  l+++ +v +l+ +va+++ ++l+++l + 
    KOO24005.1 842 LILCdRTYTTRFWTLLEAWISMQMATIDGLVPAPREKRRCDIVPIHLASEVTVSELETLVAGKSLDQLYAMLESP 916
                   44441567899*********************99999999999***************************98765 PP

>> Sigma70_r1_1  Sigma-70 factor, region 1.1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.9   0.0     0.014        27      37      64 ..     241     268 ..     230     280 .. 0.81
   2 ?    7.6   0.1     0.002         4      37      64 ..     904     931 ..     891     941 .. 0.81

  Alignments for each domain:
  == domain 1  score: 4.9 bits;  conditional E-value: 0.014
                   HHHHHHHHHHHCCT-EEE-SS-...... CS
  Sigma70_r1_1  37 eqiediiemLedmgIdvveeaededell 64 
                    +++++++mL+  +++v +++++ ++l+
    KOO24005.1 241 KSLDELYAMLDSPDVSVTNQNDKGQQLA 268
                   579*******************777765 PP

  == domain 2  score: 7.6 bits;  conditional E-value: 0.002
                   HHHHHHHHHHHCCT-EEE-SS-...... CS
  Sigma70_r1_1  37 eqiediiemLedmgIdvveeaededell 64 
                    +++++++mLe  +I+v +++++ ++l+
    KOO24005.1 904 KSLDQLYAMLESPDIQVTNQKDKGQQLA 931
                   579******************9777765 PP

>> HEAT  HEAT repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.1   0.4     0.017        33       5      28 ..     351     374 ..     348     376 .. 0.86
   2 ?    1.2   0.0      0.29   5.9e+02       4      28 ..     391     415 ..     389     416 .. 0.89
   3 ?   -3.3   0.0       8.2   1.6e+04      16      28 ..     445     457 ..     434     458 .. 0.73
   4 ?   -2.5   0.0       4.5     9e+03       6      28 ..     477     499 ..     474     501 .. 0.76
   5 ?   -0.7   0.0       1.2   2.5e+03      13      29 ..     609     625 ..     599     627 .. 0.74
   6 ?   -2.6   0.0       4.9   9.7e+03      20      29 ..     661     670 ..     655     671 .. 0.61
   7 ?    5.1   0.4     0.017        33       5      28 ..    1022    1045 ..    1019    1047 .. 0.86
   8 ?    1.1   0.0      0.32   6.4e+02       4      28 ..    1062    1086 ..    1060    1087 .. 0.89
   9 ?   -1.6   0.0       2.4   4.7e+03      11      28 ..    1111    1128 ..    1103    1130 .. 0.75
  10 ?   -3.6   0.0         9   1.8e+04       7      28 ..    1148    1169 ..    1145    1170 .. 0.75
  11 ?    3.4   0.0      0.06   1.2e+02       5      30 ..    1188    1213 ..    1185    1214 .. 0.86
  12 ?   -2.0   0.0       3.1   6.2e+03      16      28 ..    1241    1253 ..    1229    1255 .. 0.73
  13 ?   -0.6   0.0       1.2   2.3e+03       5      29 ..    1313    1337 ..    1310    1339 .. 0.85

  Alignments for each domain:
  == domain 1  score: 5.1 bits;  conditional E-value: 0.017
                 HHHHHT-SSHHHHHHHHHHHHHHH CS
        HEAT   5 llkllsDpspeVReaAakaLgala 28 
                 l+ ll+ ++p  R+ Aa+aL  la
  KOO24005.1 351 LVALLTAQDPAARAEAARALRSLA 374
                 47789***************9997 PP

  == domain 2  score: 1.2 bits;  conditional E-value: 0.29
                 HHHHHHT-SSHHHHHHHHHHHHHHH CS
        HEAT   4 lllkllsDpspeVReaAakaLgala 28 
                 +l++ll++   ++ e Aa aL +la
  KOO24005.1 391 PLVTLLKSGTDDQKEQAAGALRNLA 415
                 5788999999***********9997 PP

  == domain 3  score: -3.3 bits;  conditional E-value: 8.2
                 HHHHHHHHHHHHH CS
        HEAT  16 VReaAakaLgala 28 
                 + e+Aa aL  la
  KOO24005.1 445 QKENAADALRCLA 457
                 6789999998765 PP

  == domain 4  score: -2.5 bits;  conditional E-value: 4.5
                 HHHHT-SSHHHHHHHHHHHHHHH CS
        HEAT   6 lkllsDpspeVReaAakaLgala 28 
                 ++l ++   ++ e Aa aL  la
  KOO24005.1 477 VTLVKSGTDSQKEYAADALRCLA 499
                 55667777888999999998877 PP

  == domain 5  score: -0.7 bits;  conditional E-value: 1.2
                 SHHHHHHHHHHHHHHHH CS
        HEAT  13 speVReaAakaLgalae 29 
                    + e+Aa aL +la 
  KOO24005.1 609 TDGQKENAAGALRNLAD 625
                 5557899*****99996 PP

  == domain 6  score: -2.6 bits;  conditional E-value: 4.9
                 HHHHHHHHHH CS
        HEAT  20 AakaLgalae 29 
                 A+++L+++ae
  KOO24005.1 661 ALRNLADIAE 670
                 5666666665 PP

  == domain 7  score: 5.1 bits;  conditional E-value: 0.017
                  HHHHHT-SSHHHHHHHHHHHHHHH CS
        HEAT    5 llkllsDpspeVReaAakaLgala 28  
                  l+ ll+ ++p  R+ Aa+aL  la
  KOO24005.1 1022 LVALLTAQDPAARAEAARALRSLA 1045
                  47789***************9997 PP

  == domain 8  score: 1.1 bits;  conditional E-value: 0.32
                  HHHHHHT-SSHHHHHHHHHHHHHHH CS
        HEAT    4 lllkllsDpspeVReaAakaLgala 28  
                  +l++ll++   ++ e Aa aL +la
  KOO24005.1 1062 PLVTLLKSGTDDQKEQAAGALRNLA 1086
                  5788999999***********9997 PP

  == domain 9  score: -1.6 bits;  conditional E-value: 2.4
                  -SSHHHHHHHHHHHHHHH CS
        HEAT   11 DpspeVReaAakaLgala 28  
                  +    + e+Aa aL +la
  KOO24005.1 1111 SGTDGQKENAAGALRNLA 1128
                  55556789******9998 PP

  == domain 10  score: -3.6 bits;  conditional E-value: 9
                  HHHT-SSHHHHHHHHHHHHHHH CS
        HEAT    7 kllsDpspeVReaAakaLgala 28  
                  +l ++   ++ e Aa +L  la
  KOO24005.1 1148 TLVKSGTDSQKEYAAGTLRSLA 1169
                  5566777788999999999887 PP

  == domain 11  score: 3.4 bits;  conditional E-value: 0.06
                  HHHHHT-SSHHHHHHHHHHHHHHHHC CS
        HEAT    5 llkllsDpspeVReaAakaLgalaev 30  
                  l++l ++   ++ e+Aa aL +lae+
  KOO24005.1 1188 LVTLVQSGTDRQKENAAGALRNLAEI 1213
                  67778899999*************96 PP

  == domain 12  score: -2.0 bits;  conditional E-value: 3.1
                  HHHHHHHHHHHHH CS
        HEAT   16 VReaAakaLgala 28  
                  + e Aa aL +la
  KOO24005.1 1241 QKEKAAAALKNLA 1253
                  6788999999998 PP

  == domain 13  score: -0.6 bits;  conditional E-value: 1.2
                  HHHHHT-SSHHHHHHHHHHHHHHHH CS
        HEAT    5 llkllsDpspeVReaAakaLgalae 29  
                  l+k+ ++   ++ + Aa aL +la 
  KOO24005.1 1313 LVKMEQSGTDRQKDYAAGALQNLAL 1337
                  7888899999999********9985 PP

>> Arm_2  Armadillo-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.3   0.1     0.047        93      44     172 ..     377     509 ..     349     553 .. 0.47
   2 ?    0.8   0.2      0.14   2.8e+02      13      59 ..     597     642 ..     560     678 .. 0.58
   3 ?    4.2   0.1     0.013        26      17      91 ..    1022    1096 ..    1013    1102 .. 0.84
   4 ?    6.9   1.7    0.0019       3.7      10     172 ..    1098    1263 ..    1090    1281 .. 0.59
   5 ?    0.4   0.1      0.18   3.6e+02      13      92 ..    1268    1346 ..    1254    1348 .. 0.82

  Alignments for each domain:
  == domain 1  score: 2.3 bits;  conditional E-value: 0.047
       Arm_2  44 svnqdiirdlggitiianllsksnaevkekalnalnnls.envenqkkikvyvnqvckdivssplNsevQlag.Lklltnlsvtneyqhll...vsyis 137
                 + n+  i + g i+ +  ll +     ke+a  al nl+  n+enq  i          +++ +  ++ Q ++    l  l+ +n  + +l   +  i 
  KOO24005.1 377 AENKVSIVQAGAIAPLVTLLKSGTDDQKEQAAGALRNLAlRNAENQVLIA-QAGAFAPLVTLVQSGTDGQKENaADALRCLAFKNAENQVLfaqAGAIV 474
                 44444444444444444444444444455555555444412333333222.222222233333333333322111222223333322222211133455 PP

       Arm_2 138 ellsLLskGnekikvqvLkvllnlseNpamtrell 172
                  l++L+++G    k +    l +l+ N++  + l+
  KOO24005.1 475 PLVTLVKSGTDSQKEYAADALRCLAYNNEENQFLI 509
                 56666666666666666666666666666655555 PP

  == domain 2  score: 0.8 bits;  conditional E-value: 0.14
       Arm_2  13 elekllalLkssedpliqeialltlgnsaaysvnqdiirdlggitii 59 
                  ++ l++l++s +d   +e a  +l n a  + nq +i + g it  
  KOO24005.1 597 AIAPLVTLVQSGTDGQ-KENAAGALRNLADIAENQVLIAQAGAITAP 642
                 3444555666555554.344445666666666666666666666554 PP

  == domain 3  score: 4.2 bits;  conditional E-value: 0.013
       Arm_2   17 llalLkssedpliqeialltlgnsaaysvnqdiirdlggitiianllsksnaevkekalnalnnls.envenqkki 91  
                  l+alL +++dp+    a  +l   a  + n+  i++ g i+ +  ll +     ke+a  al nl+ +n+enq+ki
  KOO24005.1 1022 LVALL-TAQDPAARAEAARALRSLAINAENKVSIEQAGAIAPLVTLLKSGTDDQKEQAAGALRNLAvKNAENQEKI 1096
                  45555.6789999988888998888889999999999999999999999999999999999999873589999998 PP

  == domain 4  score: 6.9 bits;  conditional E-value: 0.0019
       Arm_2   10 epkelekllalLkssedpliqeialltlgnsaaysvnqdiirdlggitiianllsksnaevkekalnalnnl.senvenqkkikvy..vnqvckdiv 103 
                  ++  ++ l++l++s +d   +e a  +l n a  + nq +i++ g i+ +  l+ +   + ke a  +l  l ++n+enq+ki     +  ++  + 
  KOO24005.1 1098 QAGAIAPLVTLVQSGTDGQ-KENAAGALRNLAFIPKNQVLIEQAGAIVPLVTLVKSGTDSQKEYAAGTLRSLaAKNAENQEKIAQAgaIAPLVTLVQ 1193
                  5556677888888888876.56666789999999999999999998887777777777777777766676652578888888864311333222222 PP

       Arm_2  104 ssplNsevQla.gLklltnlsvtneyqhllvsy...isellsLLskGnekikvqvLkvllnlseNpamtrell 172 
                  s    ++ Q + +   l nl+   e + l+++     + l++LL++G +  k +    l nl+ N+a  + l+
  KOO24005.1 1194 S---GTDRQKEnAAGALRNLAEIAENKVLIAQAgaiTAPLVTLLKSGTGGQKEKAAAALKNLAYNNAKNQVLI 1263
                  2...223332211223444444444444444321113456666666666666666666666666666666655 PP

  == domain 5  score: 0.4 bits;  conditional E-value: 0.18
       Arm_2   13 elekllalLkssedpliqeialltlgnsaaysvnqdiirdlggitiianllsksnaevkekalnalnnlsenvenqkkik 92  
                   ++ l++l++s +d   ++ a  +l n a ++ nq +  + g i+ + ++  +   + k  a  al+nl+  +enq  i+
  KOO24005.1 1268 AIAPLVTLVQSGTDGQ-KDYAAGALQNLALHAENQVLFAQAGAIAPLVKMEQSGTDRQKDYAAGALQNLALHAENQVLIE 1346
                  5667899999998876.56777799999************9999888888888888888899999999999999998776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1350 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       582  (0.0324614); expected 358.6 (0.02)
Passed bias filter:                      375  (0.0209158); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                        13  (0.000725082); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.89u 0.30s 00:00:01.19 Elapsed: 00:00:00.45
# Mc/sec: 8973.05
//
Query:       KOO24006.1  [L=264]
Description: set and mynd domain containing protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.1e-10   41.3   0.0      3e-10   40.7   0.0    1.3  1  SET       SET domain


Domain annotation for each model (and alignments):
>> SET  SET domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.7   0.0   1.7e-14     3e-10     115     168 ..      52     101 ..       7     102 .. 0.79

  Alignments for each domain:
  == domain 1  score: 40.7 bits;  conditional E-value: 1.7e-14
                 EEEEECCCGTTGGGCEEXSSSSEEEEEEEETTSSEEEEEESSXBXTTEEEEEXT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
         SET 115 alksgngagplarflNHsCdpNcnltvqnvlrgprvavfAtrdIkkGeEltidY 168
                  +  g+g++  a+++NHsC pNc++++ +     r+a++   +I++GeElti Y
  KOO24006.1  52 VDLIGHGVYMAASLFNHSCAPNCHASTGV----HRMAIIVDVPIEPGEELTIAY 101
                 335667778899***********555555....********************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (264 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       686  (0.038262); expected 358.6 (0.02)
Passed bias filter:                      445  (0.0248201); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.23s 00:00:00.66 Elapsed: 00:00:00.39
# Mc/sec: 2021.66
//
Query:       KOO24007.1  [L=660]
Description: drug metabolite transporter superfamily [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.6e-07   30.7   0.0    5.3e-07   29.7   0.0    1.5  1  Abhydrolase_3  alpha/beta hydrolase fold
    5.7e-07   29.2  12.4    9.8e-07   28.4  12.4    1.4  1  TPT            Triose-phosphate Transporter family
    4.6e-05   22.8  12.4      9e-05   21.8  12.4    1.5  1  UAA            UAA transporter family
     0.0023   18.1  28.2     0.0035   17.5  10.0    2.4  2  EamA           EamA-like transporter family


Domain annotation for each model (and alignments):
>> Abhydrolase_3  alpha/beta hydrolase fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.7   0.0   1.2e-10   5.3e-07     143     204 ..     568     628 ..     533     633 .. 0.85

  Alignments for each domain:
  == domain 1  score: 29.7 bits;  conditional E-value: 1.2e-10
                    HHSSGGGGGSTTTSGGGCS-SST---EEEEEETT-TTHHHHHHHHHHHHHTT--EEEEEETT CS
  Abhydrolase_3 143 lylpeadrddplaspllaedlsglpptlvvvaefDplrdegeayaerlraagvevelieyeg 204
                       +++d +dp+++ l++ +++glp ++v+va  Dp+rdeg ++ + lr  gv+ +  +++g
     KOO24007.1 568 PPHDQEDSADPRFNLLAG-SFKGLPSAVVAVALADPFRDEGYELVRLLRRDGVPLTALRIHG 628
                    444589999*****8877.*************************************999988 PP

>> TPT  Triose-phosphate Transporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.4  12.4   2.2e-10   9.8e-07      10     286 ..      19     295 ..      11     299 .. 0.70

  Alignments for each domain:
  == domain 1  score: 28.4 bits;  conditional E-value: 2.2e-10
         TPT  10 WYllnvvfnilnKkilnvfpyPltvsavqllvgsvlilvlwalglkkrpkisseflkailplalvktlghvlavvslskvaVSfthtvKasePiFtvil 108
                   +++++  i+nK  l+v+p+P+++s++q++   + +++l+alg++     +++ +k   +   + +++    + +l+  +V    + +a+ P+    l
  KOO24007.1  19 FSIASSSLLIVNKVCLHVLPLPSFISLAQFVTAALTSMALMALGYVPLEPWEWRKVKPYCIYVAMFVATIYCNMRALQYSNVETVIIFRACCPLVVCYL 117
                 456788999*********************************************8887666655666666777779*******999************* PP

         TPT 109 srlllgeklsl.lvylsLlpivgGvalasvtElsFnligfisAlisnltfslrni...fsKkllkklkdldalnlfaiitilslllllPvallvegvlk 203
                    ++g  l+     l+Ll +v Gva   +t+ sF+l gf +   ++  f++ ++   + K ++ +       +     t+ +  +++P +l +  v++
  KOO24007.1 118 EWAFMGRALPSaRSCLALLTLVIGVAGYVLTDKSFQLNGFAAYSWATAYFVIISVemcWGKHIVGE---SLGFKSSWGPTLYTNTISIPPMLTIGLVTH 213
                 *****99876515789************************99888888777666511133444443...122222233344445555555555555444 PP

         TPT 204 tpsllkstkvslkevllllllsgvlfhlynqvaymvLervspvthsvantvKrvvvIvlsvlvfknpvsllnaiGtavaivGv 286
                  p  + +++      ++ll ls ++  + + + + + + v++  ++v  ++ ++  + + vl+  ++ s   ++  ++ ++G+
  KOO24007.1 214 EPLKAYEAT-WSLGACALLGLSCLIGVAISYLGFRARALVTATCYTVLGVANKMATVLINVLLWDQHASAAGIFFLTICLIGA 295
                 433333332.2334455555555555566666666666666666666666666666666666666666666666666666665 PP

>> UAA  UAA transporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.8  12.4     2e-08     9e-05      33     295 ..      41     295 ..      13     301 .. 0.75

  Alignments for each domain:
  == domain 1  score: 21.8 bits;  conditional E-value: 2e-08
         UAA  33 nlltfvqflfvalegllesid..i..lkkrkiPlktYvilvalffitsvlnnealkydisvPvhiifrssklipvmilGililgkrY.sllqylsvlll 126
                  ++ ++qf++ al ++       +     +   +k Y+i va+f++t  +n  al+y  +v + iifr++  + v  l + ++g+   s +  l++l l
  KOO24007.1  41 SFISLAQFVTAALTSMALMALgyVplEPWEWRKVKPYCIYVAMFVATIYCNMRALQY-SNVETVIIFRACCPLVVCYLEWAFMGRALpSARSCLALLTL 138
                 688899998888888844443541435556667899*********************.9*************************98735678999999* PP

         UAA 127 tlGviiftllsakdkkedskeslnkfllGiallvlallldavlglvqeklykkygkhskealfyshllslplfl...llqgellsavkflsesedvall 222
                 ++Gv    l ++k+++ +   ++++++  ++++++ ++      +v e+l   +++++  +l y++ +s+p +l   l+++e l+a+++ ++   +a  
  KOO24007.1 139 VIGVAGYVL-TDKSFQLNGFAAYSWATAYFVIISVEMCWGKH--IVGESL--GFKSSWGPTL-YTNTISIPPMLtigLVTHEPLKAYEATWSLGACA-- 229
                 *********.77788888889999999999999999888764..466776..4567776665.6788888888888888888888888888888887.. PP

         UAA 223 slpsklfylllnvltqyvcikgVlilisefgaltvtlvl.tlRKfvslllSillFknpltlqhlvgtllVflgl 295
                         ll ++++  v i++    +++  ++t+ +vl  + K+ ++l+ +ll++++ ++  ++   + ++g+
  KOO24007.1 230 --------LLGLSCLIGVAISYLGFRARALVTATCYTVLgVANKMATVLINVLLWDQHASAAGIFFLTICLIGA 295
                 ........344444444555555555555555555555514567778888888877777777766666655555 PP

>> EamA  EamA-like transporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5  10.0   7.7e-07    0.0035       6     134 ..      15     144 ..      11     147 .. 0.83
   2 !    6.1  10.2    0.0027        12       4     132 ..     166     295 ..     159     298 .. 0.85

  Alignments for each domain:
  == domain 1  score: 17.5 bits;  conditional E-value: 7.7e-07
        EamA   6 lallaalfwaiyfvlskillrkvspl.tltfvrfliagillliiallkegklaklslkdwlll.lllgllgtvlafllffyalkktsasnaslitsleP 102
                  +ll ++ +++  ++ k+ l+ ++   +++  +f+ a++  +++++l   +l+ + ++ ++ + ++++   +v++ ++ + al+++++ ++ ++ +  P
  KOO24007.1  15 AMLLFSIASSSLLIVNKVCLHVLPLPsFISLAQFVTAALTSMALMALGYVPLEPWEWRKVKPYcIYVAM--FVATIYCNMRALQYSNVETVIIFRACCP 111
                 5789999999999999***99997553777789999999999999999999988888888887677775..566667********************** PP

        EamA 103 vftlilsvlllgekl.tlkqllgivlillGvll 134
                 +++  l +++ g  l + ++ l+++  ++Gv+ 
  KOO24007.1 112 LVVCYLEWAFMGRALpSARSCLALLTLVIGVAG 144
                 ***********7665156677777777788775 PP

  == domain 2  score: 6.1 bits;  conditional E-value: 0.0027
        EamA   4 illallaalfwaiyfvlskillrkvspltltfvrfliagillliiallkegkl....aklslkdwllllllgllgtvlafllffyalkktsasnaslit 98 
                 +++++ + ++w+  +v    +  + s++  t ++ +i+   +l i l++ ++l    a +sl + +ll l +l+g+++ + l f a   ++a+  +++ 
  KOO24007.1 166 YFVIISVEMCWGKHIVGESLG--FKSSWGPTLYTNTISIPPMLTIGLVTHEPLkayeATWSLGACALLGLSCLIGVAISY-LGFRARALVTATCYTVLG 261
                 566667777777777776554..33444555566688999999999999999999999*********9****99999996.999*************** PP

        EamA  99 slePvftlilsvlllgekltlkqllgivlillGv 132
                     + t+++ vll+ ++ +   ++ + ++l+G+
  KOO24007.1 262 VANKMATVLINVLLWDQHASAAGIFFLTICLIGA 295
                 ********************************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (660 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       825  (0.0460148); expected 358.6 (0.02)
Passed bias filter:                      444  (0.0247643); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.61u 0.26s 00:00:00.87 Elapsed: 00:00:00.42
# Mc/sec: 4763.24
//
Query:       KOO24008.1  [L=364]
Description: hypothetical protein Ctob_001924 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (364 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       149  (0.00831056); expected 358.6 (0.02)
Passed bias filter:                       64  (0.00356964); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                        13  (0.000725082); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.75u 0.26s 00:00:01.01 Elapsed: 00:00:00.43
# Mc/sec: 2529.12
//
Query:       KOO24009.1  [L=699]
Description: voltage-gated ion channel superfamily [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    2.9e-23   82.4   5.3    4.3e-23   81.8   5.3    1.2  1  Ion_trans    Ion transport protein
    2.7e-08   33.7   1.8    6.8e-08   32.4   1.8    1.7  1  Ion_trans_2  Ion channel
  ------ inclusion threshold ------
       0.17   11.9   0.2        0.3   11.1   0.2    1.3  1  DUF5529      Family of unknown function (DUF5529)


Domain annotation for each model (and alignments):
>> Ion_trans  Ion transport protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   81.8   5.3   7.1e-27   4.3e-23       2     231 ..      38     331 ..      37     343 .. 0.76

  Alignments for each domain:
  == domain 1  score: 81.8 bits;  conditional E-value: 7.1e-27
                 HHHHHHHHHHHHHHHHHHHCCCSSSSHHHHC....HHHHHHHHHHHHHHHHHHHHHHHHHTH...............HHHHHHCHSHHHHHHHHHHHHH CS
   Ion_trans   2 svfelfilllillncvflaletyfpedelek....tileilelvftaiftlemllkilalgl...............likkrYlrdpwnilDflvvlps 81 
                 ++++l+  + +++++++ ++e +f  + +      + ++ l+ ++++if+++ml+++++++l                i+++Y+r+ w+ +D++++l+s
  KOO24009.1  38 QYWDLVTSVALIYTAAVTPFEVAFLAQLSPSerwsDTVFLLNRCVDIIFIMDMLMQFRTAFLridlikgaswitdpgAIAFHYVRSSWFYIDLFSILTS 136
                 89*******************99999444445678999999******************999************************************* PP

                 HHHHHHHHHHHHHHHHHHHHGGGGGGHHHCHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCC..................... CS
   Ion_trans  82 llslvlseesllllsvlrlfrvlrllklisrleglrtlvtalirsvkdllnvlllllvvlfifaligvqlfkgklrek..................... 159
                 l+++v   e l +l +lr++rvlrl kl++  +g r++ +   ++  ++ n++ll+lv +++  ++gv+ f+  +  +                     
  KOO24009.1 137 LFDIVGG-EGLDGLIALRIIRVLRLAKLVRLARGSRIFRK--WEMSWSI-NYALLALVKIVLAQIVGVHWFACIWGLEasfdplhswprqngycvawed 231
                 ****764.47899999999999999999999999888555..3444444.7777777777777777777776666655677777777887777777777 PP

                 ...............................CCSCCSTSSSTTTSSSSSS..................HHHHHHHHHHHHTTSSHHHHHHHHHHHSHHH CS
   Ion_trans 160 ...............................necaktwenpnngntnFdn..................fftallwlfrlmttegwgdilyatldekskv 209
                                                +                 +                  ++++l+++  ++t++g+gdil+ + +     
  KOO24009.1 232 nnrsaveaavdacsstpdtqgviasgrvcdkG-----------------EcigglceggyecvapftmYSNCLYFSAMTITSVGYGDILAEPFNVT--- 310
                 76666666666665555555555444444331.................0333333333333333333*********************9999888... PP

                 HHHHHHHHHHHHHHHHHHHHHH CS
   Ion_trans 210 aliyfvifiilgsflllNllia 231
                    ++++fi+l s  l  +li+
  KOO24009.1 311 -EQLVACFIMLTSGALWGYLIG 331
                 .557777777777666666666 PP

>> Ion_trans_2  Ion channel
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.4   1.8   1.1e-11   6.8e-08      25      75 ..     283     335 ..     271     339 .. 0.86

  Alignments for each domain:
  == domain 1  score: 32.4 bits;  conditional E-value: 1.1e-11
                  HHHHHHHHHHHHTTS----SSTT..-----HHHHHHHHHHHHHHHHHHHHHHH CS
  Ion_trans_2  25 fldalYfsfvtltTiGYGdivpe..tdagrlftivyillGlalfalflavlgk 75 
                  ++++lYfs +t+t++GYGdi +e  + + +l++++++l+  al ++++ ++ +
   KOO24009.1 283 YSNCLYFSAMTITSVGYGDILAEpfNVTEQLVACFIMLTSGALWGYLIGTFCN 335
                  789*****************7776355589****************9998865 PP

>> DUF5529  Family of unknown function (DUF5529)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.2     5e-05       0.3     111     150 ..     574     613 ..     570     625 .. 0.92

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 5e-05
     DUF5529 111 eaasplapgpatprlasasrpeelceleirikelelltit 150
                 ea +p++pg + p+  sa+r ++l + e rike+e  ++t
  KOO24009.1 574 EANTPVSPGSPEPKTKSARRRKQLHAEEKRIKEVEAASAT 613
                 6899******************************999988 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (699 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       582  (0.0324614); expected 358.6 (0.02)
Passed bias filter:                      402  (0.0224218); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.62u 0.27s 00:00:00.89 Elapsed: 00:00:00.44
# Mc/sec: 4736.61
//
Query:       KOO24010.1  [L=2082]
Description: flagellar associated protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.5e-10   41.4   2.6    1.6e-06   28.5   0.3    3.0  3  EF-hand_7        EF-hand domain pair
    3.6e-09   35.8   7.9      0.008   16.0   0.0    3.6  3  EF-hand_6        EF-hand domain
    2.3e-08   33.0   8.2      0.012   15.1   0.6    3.7  3  EF-hand_1        EF hand
    6.7e-07   28.5   9.1      0.008   15.6   0.3    3.7  3  EF-hand_5        EF hand
  ------ inclusion threshold ------
      0.068   13.0   5.9       0.99    9.3   0.6    3.0  3  EF-hand_8        EF-hand domain pair
       0.15   12.4   0.2         12    6.3   0.0    2.6  2  SPARC_Ca_bdg     Secreted protein acidic and rich in cysteine
       0.15   12.1   0.6       0.27   11.3   0.6    1.2  1  RRT14            Regular of rDNA transcription protein 14
       0.17   10.4   0.0       0.26    9.8   0.0    1.1  1  Pectate_lyase_2  Periplasmic pectate lyase


Domain annotation for each model (and alignments):
>> EF-hand_7  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.5   0.3   6.9e-10   1.6e-06       6      70 ..    1105    1187 ..    1102    1188 .. 0.83
   2 ?   -2.7   0.0       3.8   8.5e+03      16      32 ..    1721    1737 ..    1719    1755 .. 0.61
   3 !   11.5   0.0   0.00014       0.3       9      27 ..    2002    2025 ..    1953    2069 .. 0.78

  Alignments for each domain:
  == domain 1  score: 28.5 bits;  conditional E-value: 6.9e-10
   EF-hand_7    6 eaFkelDtdgdgyldkeellrllrkifqga...................gegsklsd..eelellfkefDtdkdGvisfdEFlkly 70  
                   aF ++D ++dg l++ e+ r++r+                         +g++l +   + ++lfk +D+d+++ +s++EF++++
  KOO24010.1 1105 AAFALMDANDDGDLTRLEMIRAFRQ---DErvrelllpllplsgtaknsVTGVDLQEqiNAFDELFKVMDSDGSDAVSRQEFETFF 1187
                  57****************6667775...44678*********99998886666666633459*********************997 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 3.8
   EF-hand_7   16 dgyldkeellrllrkif 32  
                  + yl+++el r++ + +
  KOO24010.1 1721 SAYLNVQELTRIFASAN 1737
                  679999**888665433 PP

  == domain 3  score: 11.5 bits;  conditional E-value: 0.00014
   EF-hand_7    9 kelDtdgdgyldkeellr.....l 27  
                  + lD+++dg++dk el +     +
  KOO24010.1 2002 DRLDSNHDGKIDKKELDKrrrqrA 2025
                  679999999999999986444441 PP

>> EF-hand_6  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.0   3.6e-06     0.008       3      28 ..    1104    1129 ..    1102    1139 .. 0.90
   2 !   12.6   0.4   4.6e-05       0.1       2      27 ..    1163    1188 ..    1162    1193 .. 0.91
   3 !    9.6   0.5   0.00042      0.93       7      23 ..    2002    2018 ..    2000    2019 .. 0.88

  Alignments for each domain:
  == domain 1  score: 16.0 bits;  conditional E-value: 3.6e-06
   EF-hand_6    3 reaFklfDkdgdGkidaeElrkalrk 28  
                  r+aF l+D ++dG +++ E+++a+r+
  KOO24010.1 1104 RAAFALMDANDDGDLTRLEMIRAFRQ 1129
                  89**********************96 PP

  == domain 2  score: 12.6 bits;  conditional E-value: 4.6e-05
   EF-hand_6    2 lreaFklfDkdgdGkidaeElrkalr 27  
                  ++e+Fk +D dg+  ++++E+  ++ 
  KOO24010.1 1163 FDELFKVMDSDGSDAVSRQEFETFFE 1188
                  789******************99876 PP

  == domain 3  score: 9.6 bits;  conditional E-value: 0.00042
   EF-hand_6    7 klfDkdgdGkidaeElr 23  
                  + +D ++dGkid++El 
  KOO24010.1 2002 DRLDSNHDGKIDKKELD 2018
                  679************95 PP

>> EF-hand_1  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.4   0.1   0.00036      0.81       3      27 ..    1104    1128 ..    1102    1130 .. 0.92
   2 !   15.1   0.6   5.5e-06     0.012       2      27 ..    1163    1188 ..    1162    1190 .. 0.92
   3 !   11.4   0.2   8.2e-05      0.18       5      22 ..    2000    2017 ..    1997    2019 .. 0.89

  Alignments for each domain:
  == domain 1  score: 9.4 bits;  conditional E-value: 0.00036
                  HHHHHHHTTTSSSEEEHHHHHHHHH CS
   EF-hand_1    3 keiFrefDkDgdGkIdfeEfkellk 27  
                  + +F+++D + dG +++ E++++++
  KOO24010.1 1104 RAAFALMDANDDGDLTRLEMIRAFR 1128
                  789******************9997 PP

  == domain 2  score: 15.1 bits;  conditional E-value: 5.5e-06
                  HHHHHHHHTTTSSSEEEHHHHHHHHH CS
   EF-hand_1    2 lkeiFrefDkDgdGkIdfeEfkellk 27  
                  ++e+F+++D Dg+  ++++Ef ++++
  KOO24010.1 1163 FDELFKVMDSDGSDAVSRQEFETFFE 1188
                  89*******************99986 PP

  == domain 3  score: 11.4 bits;  conditional E-value: 8.2e-05
                  HHHHHTTTSSSEEEHHHH CS
   EF-hand_1    5 iFrefDkDgdGkIdfeEf 22  
                  i + +D ++dGkId++E+
  KOO24010.1 2000 ILDRLDSNHDGKIDKKEL 2017
                  67889************8 PP

>> EF-hand_5  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.9   0.1   0.00097       2.2       3      21 ..    1105    1123 ..    1103    1127 .. 0.86
   2 !    8.1   1.0   0.00084       1.9       2      24 ..    1164    1186 ..    1163    1187 .. 0.92
   3 !   15.6   0.3   3.6e-06     0.008       6      21 ..    2002    2017 ..    1999    2022 .. 0.88

  Alignments for each domain:
  == domain 1  score: 7.9 bits;  conditional E-value: 0.00097
                  HHHHHH-SS-SSCE-HHHH CS
   EF-hand_5    3 dtFqaiDlNgDGkIskeEL 21  
                  ++F  +D+N DG +++ E 
  KOO24010.1 1105 AAFALMDANDDGDLTRLEM 1123
                  68*************9997 PP

  == domain 2  score: 8.1 bits;  conditional E-value: 0.00084
                  HHHHHHH-SS-SSCE-HHHHHHH CS
   EF-hand_5    2 kdtFqaiDlNgDGkIskeELktl 24  
                  +++F+ +D +g+  +s++E++t+
  KOO24010.1 1164 DELFKVMDSDGSDAVSRQEFETF 1186
                  679******************97 PP

  == domain 3  score: 15.6 bits;  conditional E-value: 3.6e-06
                  HHH-SS-SSCE-HHHH CS
   EF-hand_5    6 qaiDlNgDGkIskeEL 21  
                  +++D N+DGkI+k EL
  KOO24010.1 2002 DRLDSNHDGKIDKKEL 2017
                  789************9 PP

>> EF-hand_8  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.0       1.6   3.7e+03      30      44 ..    1105    1119 ..    1103    1127 .. 0.79
   2 ?    9.3   0.6   0.00044      0.99      27      53 ..    1162    1188 ..    1161    1190 .. 0.89
   3 ?    5.2   0.1    0.0082        18      31      47 ..    2000    2016 ..    1997    2017 .. 0.90

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 1.6
   EF-hand_8   30 ilfrefDtdgdGkis 44  
                  + f ++D ++dG ++
  KOO24010.1 1105 AAFALMDANDDGDLT 1119
                  66889*******776 PP

  == domain 2  score: 9.3 bits;  conditional E-value: 0.00044
   EF-hand_8   27 evdilfrefDtdgdGkisfeEFcvlle 53  
                  ++d+lf+ +D dg+ ++s  EF  ++e
  KOO24010.1 1162 AFDELFKVMDSDGSDAVSRQEFETFFE 1188
                  589*******************77776 PP

  == domain 3  score: 5.2 bits;  conditional E-value: 0.0082
   EF-hand_8   31 lfrefDtdgdGkisfeE 47  
                  +++++D ++dGki+++E
  KOO24010.1 2000 ILDRLDSNHDGKIDKKE 2016
                  899************99 PP

>> SPARC_Ca_bdg  Secreted protein acidic and rich in cysteine Ca binding region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.3   0.0    0.0052        12      13      76 ..    1059    1123 ..    1052    1132 .. 0.80
   2 ?    3.1   0.0      0.05   1.1e+02      46      78 ..    1987    2019 ..    1944    2032 .. 0.79

  Alignments for each domain:
  == domain 1  score: 6.3 bits;  conditional E-value: 0.0052
  SPARC_Ca_bdg   13 peRlrdWlknlleelkereeek.ehleelekkeeeknlkeckepvawkFsklDtnsdkvlsksEL 76  
                     +R++dW+  + e+ k +++    +  e  ++ +  + ++ +  ++  F  +D n d+ l++ E+
    KOO24010.1 1059 RQRYLDWIASMEETEKAEQQAAeGEDIEGLAELNAGEEPQQVLLARAAFALMDANDDGDLTRLEM 1123
                    58******999888777666652355666777778888888899999***********9999886 PP

  == domain 2  score: 3.1 bits;  conditional E-value: 0.05
  SPARC_Ca_bdg   46 eknlkeckepvawkFsklDtnsdkvlsksELap 78  
                    +   +  +  +    ++lD n+d+ ++k+EL++
    KOO24010.1 1987 QPLAPWLEMLLSLILDRLDSNHDGKIDKKELDK 2019
                    55555555666677789*************986 PP

>> RRT14  Regular of rDNA transcription protein 14
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.6   0.00012      0.27      63     123 ..    2010    2071 ..    1995    2080 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00012
       RRT14   63 lk.kkekkkkkkkikkkkeeekklkklakyeiikkkkeeeelteeekkyLnklvkkninalk 123 
                   k  k++  k+++++ ++++e  +k+++ + +  k   ++el++ e+++L++ +kk ++al+
  KOO24010.1 2010 GKiDKKELDKRRRQRARQRAEFIIKRQVSFTVTPKLAADKELSAAEQAKLDRTMKKIASALE 2071
                  34456667788899999***************************************999886 PP

>> Pectate_lyase_2  Periplasmic pectate lyase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   0.0   0.00012      0.26     230     304 ..    1898    1975 ..    1883    1983 .. 0.85

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.00012
  Pectate_lyase_2  230 galvwakrlaqqyvlprdkatglgvyqftqalkrdettd...dadthskygdraqrqfgpefgptalegnmmlkgrts 304 
                        ++vw++ +  + +  r k t l   +f +al r  t      ++  +kyg r+ +qf  e+     eg ++++ r +
       KOO24010.1 1898 LCFVWSQTFVSDELKRRHKLTRLTYIDFCEALGRVCTRHplpTTEILAKYGSRTAKQFFDEIAAGKHEGGVLIEKRGT 1975
                       5689******************************99987222456679*********************999988754 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (2082 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       591  (0.0329634); expected 358.6 (0.02)
Passed bias filter:                      400  (0.0223102); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 1.04u 0.26s 00:00:01.30 Elapsed: 00:00:00.45
# Mc/sec: 13910.95
//
Query:       KOO24011.1  [L=248]
Description: sel1 domain protein repeat-containing protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    4.2e-10   40.0  10.7    8.9e-05   23.0   0.3    3.7  3  Sel1            Sel1 repeat
  ------ inclusion threshold ------
      0.074   13.9   0.0       0.14   13.1   0.0    1.4  1  2OG-FeII_Oxy_3  2OG-Fe(II) oxygenase superfamily


Domain annotation for each model (and alignments):
>> Sel1  Sel1 repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.0   0.3   9.9e-09   8.9e-05       1      38 []      98     134 ..      98     134 .. 0.84
   2 !    5.0   1.3    0.0048        43      23      37 ..     154     168 ..     135     169 .. 0.74
   3 !   17.0   0.1   8.1e-07    0.0072       1      38 []     170     205 ..     170     205 .. 0.90

  Alignments for each domain:
  == domain 1  score: 23.0 bits;  conditional E-value: 9.9e-09
        Sel1   1 aeAmyrLG.mfylylnGlgvpkDpekAiewyekAAeqGd 38 
                 a+A+ +LG +++   n  gvp+D+e++++w + AAeqG+
  KOO24011.1  98 ADAQDALGrLYL--SNAEGVPRDQERGMRWVQAAAEQGH 134
                 689999**5555..45559*******************9 PP

  == domain 2  score: 5.0 bits;  conditional E-value: 0.0048
        Sel1  23 pekAiewyekAAeqG 37 
                  e A  w+ +AA++G
  KOO24011.1 154 AEAAASWFARAAAAG 168
                 577999******998 PP

  == domain 3  score: 17.0 bits;  conditional E-value: 8.1e-07
        Sel1   1 aeAmyrLGmfylylnGlgvpkDpekAiewyekAAeqGd 38 
                 a+++y  G   +y nG+gv+ D++++iew+ +A +qG+
  KOO24011.1 170 ASSQYEIG--VAYVNGDGVKMDRRQGIEWLWLAMQQGH 205
                 68******..888****************977777776 PP

>> 2OG-FeII_Oxy_3  2OG-Fe(II) oxygenase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.0   1.6e-05      0.14      15      95 ..       6      74 ..       2      75 .. 0.63

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 1.6e-05
                    E-SS----TT.-.EEEEEEEEE....ET-B--EEE............---TT-EEEEE-..B-TEEE--B.-SS-EEEEEEEE CS
  2OG-FeII_Oxy_3 15 HvDnfekeegsgqrrltvllyLnekeseeGGelelyekdk..eavkikpkkgrlvlFesdellpHevlpvtkggeRlsltgwi 95
                    H+D +          +t++  Ln+ ++++GG l l ++ +  + + ++    ++++ + d l +H+v  +  +g+R+s+++wi
      KOO24011.1  6 HYDRL--------AYITAVASLNP-TDFDGG-LYLQRSPRaeSREYFRTGSRDMIFHQYD-L-NHGVDVI--DGSRYSAVFWI 74
                    56643........56899999984.667999.6663333342444443444455555554.4.3***997..56********8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (248 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       374  (0.0208601); expected 358.6 (0.02)
Passed bias filter:                      254  (0.014167); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.40u 0.27s 00:00:00.67 Elapsed: 00:00:00.41
# Mc/sec: 1805.00
//
Query:       KOO24012.1  [L=1177]
Description: hypothetical protein Ctob_001921 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.5e-09   36.8   0.0    8.8e-09   35.0   0.0    1.9  2  ADPrib_exo_Tox  ADP-ribosyltransferase exoenzyme
    6.9e-08   32.0   0.0    6.9e-08   32.0   0.0    2.1  2  ART             NAD:arginine ADP-ribosyltransferase
  ------ inclusion threshold ------
        8.3    4.9  12.5        3.8    6.0   9.2    2.0  2  FapA            Flagellar Assembly Protein A


Domain annotation for each model (and alignments):
>> ADPrib_exo_Tox  ADP-ribosyltransferase exoenzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.0   0.0   1.5e-12   8.8e-09       7     175 ..     577     751 ..     565     755 .. 0.81
   2 ?   -4.0   0.2       1.3     8e+03      44      67 ..     890     913 ..     878     919 .. 0.62

  Alignments for each domain:
  == domain 1  score: 35.0 bits;  conditional E-value: 1.5e-12
                     HHHHHHHHTS-HHHHHHHHHHCCTTHHHHHHHHHCTTTSGGGS-SCHHHHH.............HHHHHHHCCT-.B-SS-EEEEEEE-GGGG-H CS
  ADPrib_exo_Tox   7 kkykklkekltssekeaireYtgsgysdINnyLrqnkgerndldkselekk.............iknldsaleks.ripeniivYRrvdeaelgl 87 
                     k +k  ++ ++++e  a+r Ytg    + N+ Lr  + + + +  + +  +              + +++a+ k  +i++  +vYR+    +l  
      KOO24012.1 577 KLIKIGEQATSDEELFALRLYTGPMFVKYNSTLRGARAKGTAI--EFMYTRwwdlcrgntysttLHVISAAIVKLsKITQASKVYRAP-GGAL-- 666
                     445555555699999******************9877555544..3444446777888999999**********99***********6.4444.. PP

                     HHHTT-HHHHHHHHHHHTT-EEEESS-EEEESSSS.SCCCTTT.SEEEEEEE-TT..SBEEE-CCCSSSGCG-EEEE-TTEEEEEEEEEEE CS
  ADPrib_exo_Tox  88 eldskneekvsefeakvkgkvfkergyvSTslvkdtaasfggr.eilleltvpkg..segayisplslypgeaEvLlprgltykinkitlv 175
                             ++   +a    +   e g++ST+l+k++a +++ r +  + +++++g    ga +s ls+yp e E+Llp  + +++ +i+++
      KOO24012.1 667 ------PPSFWHRNATSGVQGGLECGFMSTTLNKEEAMKYARRaPGAVLFEIDQGfvARGASVSWLSQYPAEEEILLPPFTALEVANIQIE 751
                     ......67777777777788899************999999999555555555553389**************************999985 PP

  == domain 2  score: -4.0 bits;  conditional E-value: 1.3
                     TSGGGS-SCHHHHHHHHHHHHCCT CS
  ADPrib_exo_Tox  44 gerndldkselekkiknldsalek 67 
                      e+  +++++le++ ++l+sale 
      KOO24012.1 890 SEQLRKQQEKLEESKRELNSALEA 913
                     444444447777777777777775 PP

>> ART  NAD:arginine ADP-ribosyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.0   0.0   1.2e-11   6.9e-08      57     215 ..     581     760 ..     499     765 .. 0.72
   2 ?   -3.8   2.3       1.1   6.3e+03      54      54 ..     860     860 ..     785     914 .. 0.62

  Alignments for each domain:
  == domain 1  score: 32.0 bits;  conditional E-value: 1.2e-11
         ART  57 lpeg.fkdehgiAllaYtssselyrelneavrea...Grsre.......eylsnfdfkalhfyLtraLqlLrkdsqrcsqvyRgvk...glrfsrakkg 141
                 ++e+  +de+  Al +Yt+   ++ + n  +r a   G + e       +  + + + +   +++ a+ +L+k   ++s+vyR+       +f   ++ 
  KOO24012.1 581 IGEQaTSDEELFALRLYTGP--MFVKYNSTLRGArakGTAIEfmytrwwDLCRGNTYSTTLHVISAAIVKLSK-ITQASKVYRAPGgalPPSFWHRNAT 676
                 555415789999******99..99****9999442223333321111113356899999999***********.89999****9994442245444444 PP

         ART 142 ksvRfg...qFtssslkkkvae....efgqdtllsiktcl...gvpIkefskfpsedevLIppfevFkvtnlskeegkskiqLr 215
                 + v  g    F+s+ l+k+ a     +   ++l++i   +   g+ +  +s++p e+e+L+ppf+  +v n++ e++ +  qLr
  KOO24012.1 677 SGVQGGlecGFMSTTLNKEEAMkyarRAPGAVLFEIDQGFvarGASVSWLSQYPAEEEILLPPFTALEVANIQIEGAVVVCQLR 760
                 4455443357*******99888454466779*****986544499**************************9988887777765 PP

  == domain 2  score: -3.8 bits;  conditional E-value: 1.1
         ART  54 k 54 
                 +
  KOO24012.1 860 Q 860
                 2 PP

>> FapA  Flagellar Assembly Protein A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.1     0.093   5.6e+02     330     410 ..     121     198 ..     107     209 .. 0.69
   2 ?    6.0   9.2   0.00063       3.8     319     411 ..     819     910 ..     765     951 .. 0.66

  Alignments for each domain:
  == domain 1  score: -1.1 bits;  conditional E-value: 0.093
        FapA 330 ldepelkeklkeleeeleeleeeleklkkkikklpklkaekqlesekkeqlkklletkeklkeeleeleeelkelkeeles 410
                 ++ ++++e++++le e e l++ + +++ ++ +l +  ++ +l +     ++ l++   + +e++ + e ++++  +++e+
  KOO24012.1 121 VQ-QKVRERFERLELECELLQSDVSEVEGRLVELGE--ETRCLREGEVVPIALLEQLITHVEEDVIQKESDYARYRDQIED 198
                 44.778888888888888888888888888777776..4566666666666666666666666666666666666666665 PP

  == domain 2  score: 6.0 bits;  conditional E-value: 0.00063
        FapA 319 elgtkteiev.gldepelkeklkeleeeleeleeeleklkkk.ikklpklkaekqlesekkeqlkklletkeklkeeleeleeelkelkeelesk 411
                 +++++ + +v +l+ ++l+++ ++lee+l e ++++++ + +  k + ++   ++   + + q++ + e++++ +e+l++ +e+l+e k el+s 
  KOO24012.1 819 RAESAYQAKVaSLRMNALRRREAQLEEKLAESQQKVKEQRFQmAKAMHDT---EETRLQLEAQMNAAVEARKRASEQLRKQQEKLEESKRELNSA 910
                 45666677777777777777778888877777776666665534444443...334444444444455555444444444444444444444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1177 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1908  (0.10642); expected 358.6 (0.02)
Passed bias filter:                      594  (0.0331307); expected 358.6 (0.02)
Passed Vit filter:                        87  (0.00485247); expected 17.9 (0.001)
Passed Fwd filter:                        17  (0.000948185); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 1.05u 0.29s 00:00:01.34 Elapsed: 00:00:00.49
# Mc/sec: 7242.86
//
Query:       KOO24013.1  [L=191]
Description: hypothetical protein Ctob_001593 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (191 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1158  (0.0645881); expected 358.6 (0.02)
Passed bias filter:                      542  (0.0302304); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.43u 0.24s 00:00:00.67 Elapsed: 00:00:00.39
# Mc/sec: 1457.74
//
Query:       KOO24014.1  [L=392]
Description: proline iminopeptidase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.7e-19   69.8   0.0    6.4e-19   68.6   0.0    1.5  1  Abhydrolase_1  alpha/beta hydrolase fold
    4.9e-10   39.1   0.0    1.6e-09   37.4   0.0    1.8  1  Hydrolase_4    Serine aminopeptidase, S33
    4.4e-08   34.0   2.5    8.7e-08   33.0   2.5    1.5  1  Abhydrolase_6  Alpha/beta hydrolase family
    3.5e-05   23.4   0.0     0.0032   17.0   0.0    2.2  2  Peptidase_S9   Prolyl oligopeptidase family
  ------ inclusion threshold ------
      0.083   12.7   0.0        0.7    9.6   0.0    2.1  2  Abhydrolase_2  Phospholipase/Carboxylesterase


Domain annotation for each model (and alignments):
>> Abhydrolase_1  alpha/beta hydrolase fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   68.6   0.0   1.8e-22   6.4e-19       4     251 ..      90     367 ..      88     372 .. 0.89

  Alignments for each domain:
  == domain 1  score: 68.6 bits;  conditional E-value: 1.8e-22
                    EEE-STTTCGGGGTTGHHHHHHHHTTSEEEEEEETTSTTSSSTTTGB.....CHHSHHHHHHHHHHHHHHCTTSSEE.EEEETHHHHHHHHHHHHH CS
  Abhydrolase_1   4 vilhGlpgssdvwaerglapaLakdgfdvillDlrGvgySspapacin....ddygtasvaddldrildalgddklt.lvGhSmGGmialayaaey 94 
                    ++lhG+pg + +++ r +++      + +++lD+rG+g+S p  a       ++ +t ++  d+d ++++lg++++  ++G+S+G+++alaya+ +
     KOO24014.1  90 IFLHGGPGAGCSPRSRRFFDPA---YYKIVILDQRGSGKSIPNAADDLdgslVENTTPALVHDIDLLRAKLGIERWGvVLGGSWGSTLALAYAQAH 182
                    89******99999998888555...79*************999986447888788***************************************** PP

                    GGGEEEEEEESE...CSSCCHHHHHHHHHHHHHHCHHCHHHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHCHHHCCHHHHHHHCHHHHHHHHH CS
  Abhydrolase_1  95 perVkalvllga...idpaaslieaqrqqaksfpdffdgyaadcarnpagplladelaaleqrhrlvdalkfpdkskrfpssgsdnasslatgalk 187
                    p+r+++l l g     ++  ++  ++     + p+++ +y++  + ++++  +++ + +  +++rl       +++   +s   + +++     +k
     KOO24014.1 183 PDRCSNLLLRGVflfGPDEVEYLFCNGGTFGQNPGAWSKYVQYLEDTSSNWAVEKTNLLGAYWTRL------TSSDAAVRSAAAAAFVGYELSISK 272
                    **************99999********************************************999......888888888888888888888888 PP

                    HHHHHHHCCHHHHHHHHHC.....................THHHHS......EEEEEEETTCSSSCHHHHHHHHHCHTS....EEEEEEETCSSS CS
  Abhydrolase_1 188 sieqwpttdsaklllrlre.....................lknvla......ptlvisgtsDplvppkaledlaqllpk....krlvvisdagHl 251
                        ++++ +      + +                     l+nv++      ++ + +g+ D +  p+a ++laq+l       +l+++++agH 
     KOO24014.1 273 TYTDPAVLETYLGTPTILIpfavmevhymlhagfmrrgqlLDNVKVmaehghKVAIAHGRADYVCQPQAAYRLAQALGAvgaqCELEIVAGAGHS 367
                    8888888888777777777888889999999999999999999999999999************************6655555688889999997 PP

>> Hydrolase_4  Serine aminopeptidase, S33
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.4   0.0   4.3e-13   1.6e-09      32     232 ..     113     366 ..      89     368 .. 0.83

  Alignments for each domain:
  == domain 1  score: 37.4 bits;  conditional E-value: 4.3e-13
  Hydrolase_4  32 favyalDhrGhGrse.......gkrghvpsfddyvdDlaafvekvkeehpelplfllGhSmGGliallyllrypdkvaglilsaPalkikakl..... 117
                  +++++lD+rG G+s              + +  +v D++ +  k+     e+  ++lG S+G+++al+y++ +pd+++ l l + +l  + ++     
   KOO24014.1 113 YKIVILDQRGSGKSIpnaaddlDGSLVENTTPALVHDIDLLRAKLGI---ERWGVVLGGSWGSTLALAYAQAHPDRCSNLLLRGVFLFGPDEVeylfc 207
                  8999***********99988774444578888999999999777773...334579*****************************9999999999999 PP

  Hydrolase_4 118 .......kappllklllkllgkllpklqv.............................snnlkadslsrdpevvaayeadplv.hgkitvrlllelld 178
                         ++ ++ k   + l  +  ++ v                               +l  ++   dp+v++ y   p + +    +++ + l+ 
   KOO24014.1 208 nggtfgqNPGAWSKY-VQYLEDTSSNWAVektnllgaywtrltssdaavrsaaaaafvGYELSISKTYTDPAVLETYLGTPTIlIPFAVMEVHYMLHA 304
                  999999614444443.4444555555555666666677777777**************9999*********************888888888888999 PP

  Hydrolase_4 179 amkrleeraakit......lPllllhGeaDkvvdpeasrelyerlgsk..dktlklypglyH 232
                  + +r  +  ++++        + + hG aD v++p+a+ +l+++lg+   +++l++ +g+ H
   KOO24014.1 305 GFMRRGQLLDNVKvmaehgHKVAIAHGRADYVCQPQAAYRLAQALGAVgaQCELEIVAGAGH 366
                  999988888888866677777*****************9999999887679********999 PP

>> Abhydrolase_6  Alpha/beta hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.0   2.5   2.4e-11   8.7e-08       2     208 ..      90     367 ..      89     385 .. 0.47

  Alignments for each domain:
  == domain 1  score: 33.0 bits;  conditional E-value: 2.4e-11
                    EEE--GC.....GCHHHHHHHHCCTCEEEEE--TTSTS-.....GGCS--HHH......CHHHHHHHCCTT..TTSE..EEEEETCHHHHHHHHHH CS
  Abhydrolase_6   2 lllHGagssassWlvapLaallaagvhvlapDlpGhGrs.....dpppldled......ladlaalldelaagggpv..vlvGHSlGGalalaaap 84 
                    ++lHG+++ + s + +++   +   +  +++D +G G s     d+ + +l +      ++d++ l ++l   g +   v++G S+G +lala   
     KOO24014.1  90 IFLHGGPGAGCSPRSRRFFDPAYYKI--VILDQRGSGKSipnaaDDLDGSLVEnttpalVHDIDLLRAKL---GIERwgVVLGGSWGSTLALA--- 177
                    89**9665433333334433333355..89*******552222222332332233223356666677777...66679***************... PP

                    CC............EEEEES-......----TTTS----TTHHHHHH..TT-C..CCCHCCHS-HSCCCCHHHCCCCHCHCCCGHH.......... CS
  Abhydrolase_6  85 la..........lvvgvlldppp....talpagllaaalelllalla..llrl..lawlsreplprlfladedadaawrarlarla.......... 152
                    +a          l++gv+l +p     +++  g +   +  + ++ +     +    w +++     +l+     a+w++  +  a          
     KOO24014.1 178 YAqahpdrcsnlLLRGVFLFGPDeveyLFCNGGTFGQNPGAWSKYVQylE--DtsSNWAVEK---TNLLG-----AYWTRLTSSDAavrsaaaaaf 263
                    55555788888766775555522345533333332222222222222211..1234555432...12222.....222222222221112222222 PP

                    ...................................HHCCHHCHTTCCHHTT-TTGC..................................EEECTT CS
  Abhydrolase_6 153 ...................................allaglgllpaaawadlpvpl..................................lvlgge 179
                                                       +                   +                                  +v  ++
     KOO24014.1 264 vgyelsisktytdpavletylgtptilipfavmevH-------------------YmlhagfmrrgqlldnvkvmaehghkvaiahgradYV--CQ 338
                    333333333333333333332332333333333331...................3222222222222233333333334433322222224..45 PP

                    -CHHHHCHHCCCH.STTEEETCE...SSS- CS
  Abhydrolase_6 180 Dplvprllerlla.qagarlpvvlpgaGHl 208
                     ++  rl+++l+a  a ++l ++++gaGH+
     KOO24014.1 339 PQAAYRLAQALGAvGAQCEL-EIVAGAGHS 367
                    55666788888888888888.********4 PP

>> Peptidase_S9  Prolyl oligopeptidase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.1   0.0    0.0077        28      16      88 ..     114     185 ..     106     190 .. 0.83
   2 !   17.0   0.0   8.8e-07    0.0032     142     189 ..     322     369 ..     302     387 .. 0.83

  Alignments for each domain:
  == domain 1  score: 4.1 bits;  conditional E-value: 0.0077
                   EEEEE--TTSSTTHCHHHHTTSGGGGHHHHHHHHHHHHHHHHTTS--GGGEEEEEETHHHHHHHHHHHH-GGG CS
  Peptidase_S9  16 vvvvanirGsggyGeafhdagkrklgqnefdDfiaaaealakegyvdserlaitGgSyGGyltgaalnqrpdl 88 
                    +v+ + rGsg+   + +d++++ l +n+ + ++  ++ l ++  + ++  ++ GgS G +l++a +  +pd+
    KOO24014.1 114 KIVILDQRGSGKSIPNAADDLDGSLVENTTPALVHDIDLLRAKLGI-ERWGVVLGGSWGSTLALAYAQAHPDR 185
                   5788888888888888888888888888888888888888666655.6677899**************99996 PP

  == domain 2  score: 17.0 bits;  conditional E-value: 8.8e-07
                   ---EEEEEEETT-SSS-THHHHHHHHHHH--S-SEEEEEETTS-SSTT CS
  Peptidase_S9 142 aypplLlihGlaDdrvppaealklvaaLqkkgknvlllifpdegHgvg 189
                     +++ + hG aD+ ++p+ a++l++aL   g + +l i  ++gH+ +
    KOO24014.1 322 HGHKVAIAHGRADYVCQPQAAYRLAQALGAVGAQCELEIVAGAGHSDS 369
                   66778899*************************************654 PP

>> Abhydrolase_2  Phospholipase/Carboxylesterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.4   0.0      0.13   4.6e+02     101     129 ..     146     185 ..      89     202 .. 0.66
   2 ?    9.6   0.0    0.0002       0.7     160     205 ..     327     372 ..     303     378 .. 0.86

  Alignments for each domain:
  == domain 1  score: 0.4 bits;  conditional E-value: 0.13
                    T............--GGGEEEEEETHHHHHHHHHHHT-SS- CS
  Abhydrolase_2 101 g............ipssriiigGFSqGaalalylaltlpkk 129
                                 i++  +++gG S G  lal+ a + p +
     KOO24014.1 146 LvhdidllraklgIERWGVVLGG-SWGSTLALAYAQAHPDR 185
                    34444444444448888899988.99999999988887764 PP

  == domain 2  score: 9.6 bits;  conditional E-value: 0.0002
                    EEEEETT-SSS-HHHHHHHHHHHHTTS-GEEEEEETT--SS--HHH CS
  Abhydrolase_2 160 lqiHgeeDpvvplalgkaakevlkkllkkvelksyeglaHsideee 205
                       Hg  D+v   + +++++++l ++  ++el+++ g +Hs +e  
     KOO24014.1 327 AIAHGRADYVCQPQAAYRLAQALGAVGAQCELEIVAGAGHSDSEPG 372
                    457*************************************987755 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (392 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       357  (0.0199119); expected 358.6 (0.02)
Passed bias filter:                      308  (0.0171789); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.49u 0.25s 00:00:00.74 Elapsed: 00:00:00.41
# Mc/sec: 2854.08
//
Query:       KOO24015.1  [L=144]
Description: hypothetical protein Ctob_001580 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (144 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       321  (0.017904); expected 358.6 (0.02)
Passed bias filter:                      261  (0.0145574); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.24s 00:00:00.62 Elapsed: 00:00:00.39
# Mc/sec: 1096.08
//
Query:       KOO24016.1  [L=592]
Description: membrane protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.088   13.4   0.1       0.23   12.0   0.0    1.8  2  ADSL_C    Adenylosuccinate lyase C-terminus


Domain annotation for each model (and alignments):
>> ADSL_C  Adenylosuccinate lyase C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.0      0.71   1.3e+04      27      47 ..     355     375 ..     354     382 .. 0.62
   2 ?   12.0   0.0   1.3e-05      0.23       8      41 ..     476     509 ..     467     543 .. 0.88

  Alignments for each domain:
  == domain 1  score: -3.2 bits;  conditional E-value: 0.71
                 HHHHHHHHCHHHHHHT-HHHH CS
      ADSL_C  27 eaamkaweellelLaadpevk 47 
                 ++a  + +++++ L a+++v 
  KOO24016.1 355 QHATHVERRFVQMLIAQERVV 375
                 566666666888888877776 PP

  == domain 2  score: 12.0 bits;  conditional E-value: 1.3e-05
                 HHHHHHHTH-HHHHHHHHHHHHHHHHHCHHHHHH CS
      ADSL_C   8 vllaLvkglgReeAyelVqeaamkaweellelLa 41 
                 +l+a    +gR +A+   +++a+ a ++l+e+L+
  KOO24016.1 476 ILMAHGGQMGRTTAKSTAKRHAAPAGRQLREVLK 509
                 67777779***********************998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (592 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       419  (0.02337); expected 358.6 (0.02)
Passed bias filter:                      309  (0.0172346); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.50u 0.26s 00:00:00.76 Elapsed: 00:00:00.40
# Mc/sec: 4430.21
//
Query:       KOO24017.1  [L=281]
Description: otu domain-containing protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.2e-17   63.8   0.0      4e-17   62.9   0.0    1.3  1  OTU              OTU-like cysteine protease
    3.8e-05   23.3   0.9       0.22   11.0   0.1    2.2  2  Peptidase_C65    Peptidase C65 Otubain
      0.006   16.7   0.0      0.014   15.5   0.0    1.6  1  Axin_b-cat_bind  Axin beta-catenin binding domain


Domain annotation for each model (and alignments):
>> OTU  OTU-like cysteine protease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.9   0.0   6.7e-21     4e-17       3     127 .]      65     178 ..      64     179 .. 0.94

  Alignments for each domain:
  == domain 1  score: 62.9 bits;  conditional E-value: 6.7e-21
                 SS-HHHHHHHHCCCSS.SHCCHHHHHHHHHCHHHHHHTSSHHCCHHHHCCHHHHHHHTTSTTHHHHHHHHHHHHHHCTS-EEEETTSSSSEEEE-TT-E CS
         OTU   3 DGnCLlravsqqlwgvsdelrkakvseLreklaeylrehseelelfleeeeegylkeiektaawggeleifalahiLrrpIiVlksesgeelvglkfeg 101
                 DGnCL+r+vs+ ++     ++   +  +r  + + +++++++++ +++e+++ yl+  + + ++g++lei+a+++i +rp++V    +g++++++++  
  KOO24017.1  65 DGNCLFRSVSDRVY-----GDAEMHDVVRRLCLDHMEKERDHFSQYVTEDFDAYLRRKRRDRVFGNHLEIQAISEIYNRPVHV-FDVRGDTEAPMNTFT 157
                 9************9.....77778899********************************************************.678888999999999 PP

                 EE--TTS-GGGS-SS-EEEEEETTEE CS
         OTU 102 vylplekdkslclkypihlyylgeHy 127
                   ++ e  ++l+l+y+      + Hy
  KOO24017.1 158 APSEGEAGAPLRLSYHG-----RSHY 178
                 99**************9.....5555 PP

>> Peptidase_C65  Peptidase C65 Otubain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.9   0.1   3.7e-05      0.22      41      56 ..      58      73 ..      39      78 .. 0.91
   2 !   11.0   0.1   3.6e-05      0.22     145     245 ..      90     182 ..      84     183 .. 0.81

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 3.7e-05
                   EEE-B--SSTHHHHHH CS
  Peptidase_C65 41 siRrvrgDGnCfyRaf 56
                   +iRr+  DGnC++R++
     KOO24017.1 58 HIRRMLDDGNCLFRSV 73
                   79************98 PP

  == domain 2  score: 11.0 bits;  conditional E-value: 3.6e-05
                    HHHHHHHHTHHHHGGGS-TT--HHHHHHHHTSSTT--B-HHHHHHHHHHTT--EEEEESSSSGBSTTSEEEEES-S....SS-S--SEEEEEE.TB CS
  Peptidase_C65 145 ltsaelkthadeyepFldelstveeFceqevepvnkEaDnvqitaLaealgvkvrVeyldrsvegesvnahafpeeaqkseeeqapeitLlYr.pg 239
                    l   ++++++d+++++++e  + +++++++ ++     ++++i+a++e+ + +v+V+ +    ++  +n+ ++p     se e+   + L Y    
     KOO24017.1  90 LCLDHMEKERDHFSQYVTE--DFDAYLRRK-RRDRVFGNHLEIQAISEIYNRPVHVFDVRGD-TEAPMNTFTAP-----SEGEAGAPLRLSYHgRS 176
                    555678999*********9..9********.999999*******************999866.66666666666.....45677777888887347 PP

                    EEEEEE CS
  Peptidase_C65 240 HYDiLy 245
                    HY++++
     KOO24017.1 177 HYNVIV 182
                    888875 PP

>> Axin_b-cat_bind  Axin beta-catenin binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.0   2.4e-06     0.014       9      28 ..       2      19 ..       1      21 [. 0.93

  Alignments for each domain:
  == domain 1  score: 15.5 bits;  conditional E-value: 2.4e-06
  Axin_b-cat_bind  9 DdHvsRVwktsadqtPsrsp 28
                     D H++RV+k  a qtP+r p
       KOO24017.1  2 DVHYNRVMK--ALQTPGRKP 19
                     88*******..*******98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (281 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       525  (0.0292822); expected 358.6 (0.02)
Passed bias filter:                      376  (0.0209716); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.41u 0.23s 00:00:00.64 Elapsed: 00:00:00.37
# Mc/sec: 2301.25
//
Query:       KOO24018.1  [L=253]
Description: hypothetical protein Ctob_001583 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
  ------ inclusion threshold ------
      0.019   14.8  16.4      0.024   14.5  16.4    1.1  1  ERM             Ezrin/radixin/moesin family
      0.025   14.8   8.2       0.63   10.3   3.7    2.4  2  KLRAQ           Predicted coiled-coil domain-containing prote
      0.027   14.9  14.4       0.02   15.3  11.9    1.8  2  Fez1            Fez1
      0.065   13.6   9.8       0.45   10.9   9.8    2.1  1  DUF641          Plant protein of unknown function (DUF641)
      0.069   12.5   8.6       0.12   11.7   8.6    1.3  1  GAS             Growth-arrest specific micro-tubule binding
      0.087   12.8   6.2         36    4.5   6.2    2.7  1  MCC-bdg_PDZ     PDZ domain of MCC-2 bdg protein for Usher syn
       0.11   12.6   4.3       0.15   12.1   4.3    1.3  1  UPF0242         Uncharacterised protein family (UPF0242) N-te
       0.12   10.8   6.9       0.16   10.5   6.9    1.1  1  Herpes_UL25     Herpesvirus UL25 family
       0.15   12.1   5.8        0.3   11.1   4.3    2.3  2  TMF_DNA_bd      TATA element modulatory factor 1 DNA binding
       0.24   11.6  11.8        0.3   11.3   2.8    2.7  2  TMF_TATA_bd     TATA element modulatory factor 1 TATA binding
       0.44   10.7   3.6        6.2    7.0   1.8    2.3  2  Fib_alpha       Fibrinogen alpha/beta chain family
        0.8   10.1   7.5        1.2    9.5   1.5    2.8  3  Csm1_N          Csm1 N-terminal domain
          1    7.9   4.8        1.3    7.6   4.8    1.1  1  AAA_13          AAA domain
        1.3    8.6  10.3        1.9    8.1  10.3    1.1  1  CDPS            Cyclodipeptide synthase
        3.2    8.5   5.9       0.54   10.9   0.6    2.4  2  DUF4404         Domain of unknown function (DUF4404)
        7.8    4.6   8.8        9.3    4.4   8.8    1.2  1  Atrophin-1      Atrophin-1 family


Domain annotation for each model (and alignments):
>> ERM  Ezrin/radixin/moesin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.5  16.4   2.1e-05     0.024      10     125 ..      41     142 ..      15     177 .. 0.55

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 2.1e-05
         ERM  10 leerLkqlqeeaekaqeaLreseetaelLaekarraeeeaelLe..qkaaeaeeeiqrlkesaekeeeekeklerklreaeleaarleeeserkeeeae 106
                 le+                   +e+  ++a +a +ae e++  +  +  +e ee ++ l+++  + e+e  +l + +r+ e+ a+ l++  +++e+ea+
  KOO24018.1  41 LEQSVL----------------QERRAKMAAEAAIAESESRCRTalRTVREREEDMAVLRQTVCEREAEATALRQTVRDREAVATALRKTIREREAEAT 123
                 334444................45555555555555555533221133445555566666666666666666666666666666666666666666666 PP

         ERM 107 rLkeeleeareaeeeakek 125
                  L+++l   +++ +ea ++
  KOO24018.1 124 ALRQRLSSLEAEMKEALNA 142
                 6666554433333333222 PP

>> KLRAQ  Predicted coiled-coil domain-containing protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.7   0.2    0.0077       8.7       6      45 ..      30      69 ..      25      79 .. 0.86
   2 ?   10.3   3.7   0.00056      0.63      14      75 ..      80     144 ..      72     162 .. 0.75

  Alignments for each domain:
  == domain 1  score: 6.7 bits;  conditional E-value: 0.0077
       KLRAQ  6 eYsKlraqakvLkkavleEqskeaslkeelkekeqslrks 45
                 Ys  r+ +  L ++vl+E+  + + +  + e e+  r++
  KOO24018.1 30 LYSTARSREDFLEQSVLQERRAKMAAEAAIAESESRCRTA 69
                69999*****************999999999999988875 PP

  == domain 2  score: 10.3 bits;  conditional E-value: 0.00056
       KLRAQ  14 akvLkkavleEqskeaslkeelkekeq...slrkseqEvdsLtFrNkqLekrvellqeelevee...k 75 
                  +vL+++v e  ++  +l+++++ +e+   +lrk+  E ++       L +r+++l  e++++    k
  KOO24018.1  80 MAVLRQTVCEREAEATALRQTVRDREAvatALRKTIREREA---EATALRQRLSSLEAEMKEALnaeK 144
                 579*********************99722256777666665...677888888888888887653323 PP

>> Fez1  Fez1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.5   0.4      0.65   7.2e+02      36      82 ..      10      57 ..       8      65 .. 0.55
   2 ?   15.3  11.9   1.8e-05      0.02      34     121 ..      60     147 ..      40     183 .. 0.82

  Alignments for each domain:
  == domain 1  score: 0.5 bits;  conditional E-value: 0.65
        Fez1 36 lkaqlrelrakleekeeeikeleesleektlele..vcenelqrkksea 82
                lk +lr l+++l +++e i  l ++++++++ le  v++++ +++ +ea
  KOO24018.1 10 LKVNLRKLKQRLIDTDELIG-LYSTARSREDFLEqsVLQERRAKMAAEA 57
                77888888888888776654.4444445544444004444444444444 PP

  == domain 2  score: 15.3 bits;  conditional E-value: 1.8e-05
        Fez1  34 valkaqlrelrakleekeeeikeleesleektlelevcenelqrkkseaellrekvekleeelkelreelselsleeeeaalesdeak 121
                  +  +++r +  +++e+ee +  l+++++e+++e   + + ++ +++ a+ lr+++++ e+e + lr++ls+l++e +ea ++ ++++
  KOO24018.1  60 AESESRCRTALRTVREREEDMAVLRQTVCEREAEATALRQTVRDREAVATALRKTIREREAEATALRQRLSSLEAEMKEALNAEKDTR 147
                 556789999***************************************************************8877766654433333 PP

>> DUF641  Plant protein of unknown function (DUF641)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   9.8    0.0004      0.45      70     123 ..      81     137 ..      13     142 .. 0.82

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.0004
      DUF641  70 e...aeeseleaeiqeqrsllktyeitvkkleaelkakdseieeLkekLeeaeksnk 123
                 +   ++  e eae+  +r+ ++  e+++ +l++ ++++++e + L+++L+++e++ k
  KOO24018.1  81 AvlrQTVCEREAEATALRQTVRDREAVATALRKTIREREAEATALRQRLSSLEAEMK 137
                 1333778888999999**********************************9988765 PP

>> GAS  Growth-arrest specific micro-tubule binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   8.6   0.00011      0.12      36     132 ..      46     146 ..      39     156 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.00011
         GAS  36 eelkkkeernekelseisqenkrlkepLkkaeeeveeLrkqlknyekdkqslknl....karlkelekelkdlkwehevleqrfekvekerdelykkfe 130
                  + ++ + ++e  ++e +++ +    ++++ ee+++ Lr+ + + e +  +l+++    +a  + l k +++ + e+  l+qr++++e+e +e  +  +
  KOO24018.1  46 LQERRAKMAAEAAIAESESRCRTALRTVREREEDMAVLRQTVCEREAEATALRQTvrdrEAVATALRKTIREREAEATALRQRLSSLEAEMKEALNAEK 144
                 5556667788889999999999999999*******************9999988733325666778899999999******************998887 PP

         GAS 131 aa 132
                 ++
  KOO24018.1 145 DT 146
                 76 PP

>> MCC-bdg_PDZ  PDZ domain of MCC-2 bdg protein for Usher syndrome
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.5   6.2     0.032        36      19      51 ..      72     104 ..      57     143 .. 0.64

  Alignments for each domain:
  == domain 1  score: 4.5 bits;  conditional E-value: 0.032
  MCC-bdg_PDZ  19 tleerkqqseeLsldlgkaEsnatALvlALeys 51 
                  t +er ++ + L   ++ +E++atAL++++   
   KOO24018.1  72 TVREREEDMAVLRQTVCEREAEATALRQTVRDR 104
                  556666666666666666777777776666533 PP

>> UPF0242  Uncharacterised protein family (UPF0242) N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   4.3   0.00014      0.15      66     141 ..      62     144 ..      26     156 .. 0.77

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 0.00014
     UPF0242  66 ekskleekeaklteldeglktkeealeelqeeeeeLkee.......ldakeeelerlkeenqqLqekleaiaedfeelklele 141
                  +s   +  + + e +e++++ ++++ e+++e   L++          a  +++++++ e   L+++l+   ++++e + + +
  KOO24018.1  62 SESRCRTALRTVREREEDMAVLRQTVCEREAEATALRQTvrdreavATALRKTIREREAEATALRQRLSSLEAEMKEALNAEK 144
                 4455666777888888**********************988888877778888888888999999999998888887655433 PP

>> Herpes_UL25  Herpesvirus UL25 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   6.9   0.00014      0.16      18     112 ..      69     165 ..      53     188 .. 0.73

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00014
                  ......XXXXXXXXXXXXXXXX.XXXXXXXXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXXXXXXXXX CS
  Herpes_UL25  18 dkeslrepereaellreealea.sreevevlevk.kralraeLdnlaqkavalaeeierrlkevEellekiael.eaaaaaeeaaaarpplspssasp 112
                  +  ++re e  ++ lr+ + e+ +++    ++v+ ++a++ +L++  ++  a a+++++rl+ +E+ ++++ ++ + +  a +++aa  pl     +p
   KOO24018.1  69 ALRTVREREEDMAVLRQTVCEReAEATALRQTVRdREAVATALRKTIREREAEATALRQRLSSLEAEMKEALNAeKDTRLAAQPDAAT-PLTSVVIQP 165
                  55678888889999999999997555666666662568889****************************9998876667777777774.444444444 PP

>> TMF_DNA_bd  TATA element modulatory factor 1 DNA binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.5   0.1       1.1   1.3e+03      40      67 ..      57      84 ..      41      91 .. 0.62
   2 ?   11.1   4.3   0.00027       0.3      19      65 ..      92     138 ..      68     147 .. 0.85

  Alignments for each domain:
  == domain 1  score: -0.5 bits;  conditional E-value: 1.1
  TMF_DNA_bd 40 kknkelekeikelkkkleklekeleele 67
                + ++e+e+  ++  + +++ e++++ l+
  KOO24018.1 57 AAIAESESRCRTALRTVREREEDMAVLR 84
                4556666666666666666666655554 PP

  == domain 2  score: 11.1 bits;  conditional E-value: 0.00027
  TMF_DNA_bd  19 eEGekLskkelklnntikkLrkknkelekeikelkkkleklekelee 65 
                 +E ++L+ + ++ ++    Lrk+++e e e + l ++l++le e++e
  KOO24018.1  92 AEATALRQTVRDREAVATALRKTIREREAEATALRQRLSSLEAEMKE 138
                 5888999999999999999***********************99987 PP

>> TMF_TATA_bd  TATA element modulatory factor 1 TATA binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.6   2.0     0.033        37      66     101 ..      52      87 ..      13     103 .. 0.80
   2 ?   11.3   2.8   0.00027       0.3      13      46 ..     107     140 ..      98     145 .. 0.88

  Alignments for each domain:
  == domain 1  score: 4.6 bits;  conditional E-value: 0.033
  TMF_TATA_bd  66 leelekeleelqeryetlLellGeksEeveELraDv 101
                      e+ ++e ++r  t+L    e++E +  Lr+ v
   KOO24018.1  52 KMAAEAAIAESESRCRTALRTVREREEDMAVLRQTV 87 
                  334567899999999999999999999998888766 PP

  == domain 2  score: 11.3 bits;  conditional E-value: 0.00027
  TMF_TATA_bd  13 lverlsseirrlEgElaslkeelerleaerdear 46 
                  + + l ++ir++E+E ++l+++l++leae +ea 
   KOO24018.1 107 VATALRKTIREREAEATALRQRLSSLEAEMKEAL 140
                  5678999*********************998875 PP

>> Fib_alpha  Fibrinogen alpha/beta chain family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.0   1.8    0.0055       6.2      51     129 ..      31     105 ..       2     121 .. 0.61
   2 ?    3.8   0.1     0.053        59      91     120 ..     109     138 ..     103     150 .. 0.80

  Alignments for each domain:
  == domain 1  score: 7.0 bits;  conditional E-value: 0.0055
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
   Fib_alpha  51 tkeaeelvkeikdslrekqkskkdndnvikksskeleeeilrlketidaqesnirvLqnvlesneqkiqkLeqdidqke 129
                 +++a++    +++s+ ++ + k   + +i +s+++++    +  +t+ + e+ + vL++++ + e + + L+q +  +e
  KOO24018.1  31 YSTARSREDFLEQSVLQERRAKMAAEAAIAESESRCR----TALRTVREREEDMAVLRQTVCEREAEATALRQTVRDRE 105
                 4555555555555555555555556666666666666....55567777777777777777777777777777665544 PP

  == domain 2  score: 3.8 bits;  conditional E-value: 0.053
                 CHHHHHHHCCHHHHHHHHHHHHHHHHHHHH CS
   Fib_alpha  91 lrlketidaqesnirvLqnvlesneqkiqk 120
                 + l++ti + e +  +L++ l+s+e ++++
  KOO24018.1 109 TALRKTIREREAEATALRQRLSSLEAEMKE 138
                 567888888898999999999999988875 PP

>> Csm1_N  Csm1 N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.0       5.8   6.5e+03      48      57 ..      57      66 ..      41      81 .. 0.51
   2 ?    3.1   0.1      0.11   1.2e+02      31      53 ..      82     104 ..      77     110 .. 0.87
   3 ?    9.5   1.5    0.0011       1.2      31      66 ..     110     145 ..     107     147 .. 0.89

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 5.8
      Csm1_N 48 eqlaeleekv 57
                + +ae e+++
  KOO24018.1 57 AAIAESESRC 66
                3344444444 PP

  == domain 2  score: 3.1 bits;  conditional E-value: 0.11
      Csm1_N  31 vLsqkletkdqeiesLkeqlael 53 
                 vL+q++  ++ e  +L++++   
  KOO24018.1  82 VLRQTVCEREAEATALRQTVRDR 104
                 89****************99865 PP

  == domain 3  score: 9.5 bits;  conditional E-value: 0.0011
      Csm1_N  31 vLsqkletkdqeiesLkeqlaeleekvkeleerrkk 66 
                  L+++++ ++ e  +L+++l +le+++ke+ + +k+
  KOO24018.1 110 ALRKTIREREAEATALRQRLSSLEAEMKEALNAEKD 145
                 68999***********************99887765 PP

>> AAA_13  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.6   4.8    0.0011       1.3     388     469 ..      59     138 ..      12     153 .. 0.76

  Alignments for each domain:
  == domain 1  score: 7.6 bits;  conditional E-value: 0.0011
      AAA_13 388 leeekeeakkklelhlveeleseldeykkkykklekaieklekelkeeeaelkkleeeikeLekqlrdekpaaeeinkeLka 469
                 ++e++++++++l+   v e e+++  + +++++ e++++ l + +++ ea + +l++ i+e e++ +  ++  + ++ e+k+
  KOO24018.1  59 IAESESRCRTALRT--VREREEDMAVLRQTVCEREAEATALRQTVRDREAVATALRKTIREREAEATALRQRLSSLEAEMKE 138
                 45566666666666..556666667777777777777777777777777777777777777777777766666666666654 PP

>> CDPS  Cyclodipeptide synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.1  10.3    0.0017       1.9      60     152 ..      38     130 ..      26     145 .. 0.85

  Alignments for each domain:
  == domain 1  score: 8.1 bits;  conditional E-value: 0.0017
                 HHHHHHTT--HHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTCEEEEECCCCCC-HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHCCHHHS CS
        CDPS  60 aellealGyspeeArrkaarelravrarieraleeagpepervrvrrlseflanpaYrelraeveralaedeelreacdemvrqvlerrlkde 152
                 ++ le +  ++++A+ +a++++ +  +r ++al++++ ++e++ v r   ++ + +  +lr++v+++ a  ++lr+++ e   ++++ r + +
  KOO24018.1  38 EDFLEQSVLQERRAKMAAEAAIAESESRCRTALRTVREREEDMAVLRQTVCEREAEATALRQTVRDREAVATALRKTIREREAEATALRQRLS 130
                 566777778999******************************************************************998887776665443 PP

>> DUF4404  Domain of unknown function (DUF4404)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.5       2.1   2.3e+03       5      17 ..      14      26 ..      10     102 .. 0.66
   2 ?   10.9   0.6   0.00048      0.54       7      47 ..     110     150 ..     104     163 .. 0.88

  Alignments for each domain:
  == domain 1  score: -0.7 bits;  conditional E-value: 2.1
     DUF4404  5 LekLheeLeqnes 17
                L+kL++ L ++++
  KOO24018.1 14 LRKLKQRLIDTDE 26
                5555555554443 PP

  == domain 2  score: 10.9 bits;  conditional E-value: 0.00048
     DUF4404   7 kLheeLeqnesldeetralLeslaedieellaeedaaaeee 47 
                 +L++++++ e+  ++ r++L+sl+ +++e+l+ e+++  ++
  KOO24018.1 110 ALRKTIREREAEATALRQRLSSLEAEMKEALNAEKDTRLAA 150
                 799******************************99987665 PP

>> Atrophin-1  Atrophin-1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.4   8.8    0.0083       9.3     586     660 ..      88     166 ..      45     182 .. 0.77

  Alignments for each domain:
  == domain 1  score: 4.4 bits;  conditional E-value: 0.0083
  Atrophin-1 586 akreaeqkareekerekerekererererereaeraa.kasssshesrlsepqlaakahlrasfe....pppttiaavpp 660
                   reae  a ++  r++e      r+  rereae +a +   ss e+ + e+ l a+ ++r + +    +p t++   p 
  KOO24018.1  88 CEREAEATALRQTVRDREAVATALRKTIREREAEATAlRQRLSSLEAEMKEA-LNAEKDTRLAAQpdaaTPLTSVVIQPS 166
                 469****************99999**********9999999********987.555555554433112145555555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (253 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1665  (0.0928663); expected 358.6 (0.02)
Passed bias filter:                      710  (0.0396006); expected 358.6 (0.02)
Passed Vit filter:                       100  (0.00557756); expected 17.9 (0.001)
Passed Fwd filter:                        20  (0.00111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              16  [number of targets reported over threshold]
# CPU time: 0.54u 0.28s 00:00:00.82 Elapsed: 00:00:00.38
# Mc/sec: 2019.14
//
Query:       KOO24019.1  [L=482]
Description: mitogen-activated protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.3e-53  182.1   0.0    2.2e-51  174.7   0.0    2.9  1  Pkinase        Protein kinase domain
    1.1e-29  103.5   0.0    1.8e-25   89.7   0.0    2.6  3  Pkinase_Tyr    Protein tyrosine kinase
    8.1e-05   22.1   0.0    0.00013   21.4   0.0    1.2  1  Kdo            Lipopolysaccharide kinase (Kdo/WaaP) family
     0.0089   16.0   0.9        1.2    9.0   0.0    3.1  3  APH            Phosphotransferase enzyme family
  ------ inclusion threshold ------
       0.19   10.6   0.0       0.55    9.1   0.0    1.7  1  Haspin_kinase  Haspin like kinase domain


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  174.7   0.0   6.3e-55   2.2e-51       1     264 []      38     411 ..      38     411 .. 0.86

  Alignments for each domain:
  == domain 1  score: 174.7 bits;  conditional E-value: 6.3e-55
                 EEEEEEEEEESSEEEEEEEETTTTEEEEEEEEECHCHCHHHHHHHHHHHHHHHHHSCTTB--EEEEEEE.....SSEEEEEEE--TTEBHHHHHHHHSS CS
     Pkinase   1 yekleklGeGsfGkVykaveketgkivAvKkikkekakkkkekkvlrEikilkklkhpnivrlyevfee.....kdelylvleyveggeladllerkgs 94 
                 y++++ +G+G++++V +ave++tg++vA+K+i++   + ++ kkvlrEi++l+ ++hpn++ l +          d++++++e++e + + ++++ k+s
  KOO24019.1  38 YTNVKLIGSGAYSVVARAVETATGETVAIKRISEVFYDAQEAKKVLREIRLLRDFHHPNVISLRGLAMPanietFDDIFMITEFMESD-MRRIIKSKQS 135
                 77899***********************************************************99877777779***********66.********** PP

                 --HHHHHHHHHHHHHHHHHHHHTTEE-SS-SGGGEEEETTTE.........EEE-SGTTSEESSSSCS............................... CS
     Pkinase  95 lseeeakkiakqilegleylHskgiiHrDlKpeNiLidekge.........lKitDFGlakelesssk............................... 153
                 l+ ++++++++q+++gl ++H+ + iHrDlKp+NiL+++ g+         ++++DFGla+  ++                                  
  KOO24019.1 136 LEVNKVRSFMAQLCAGLTHVHAISGIHRDLKPANILVST-GKvtpatpfgvVRLCDFGLARVDSNPRYakrleetstqvdnamedaaegvsgggdaaae 233
                 **************************************4.44478888888**********988877689999************************** PP

                 ..............BCTTTSCGGGS-HHHHTTSCBSHHHHHHHHHHHHHHHHHSS-................STTTSSHHHHHHHHHHTHHHHHHHCT. CS
     Pkinase 154 ..............ltsfvgtseYlAPEvlkeneyskkvDvWslGvilyelltgkp................pfsgekgkekvekeldqlekilkilg. 221
                               +t +v+t++Y+APEv+ +++y++++D+W++G+i+ ell  +p                pfs  +++++ ++ +dql  i++ilg 
  KOO24019.1 234 ppplkakppplraqMTFYVVTRWYRAPEVILRQKYGAAIDMWAVGCIFKELLELTPqshlrtgalfpgryciPFS-FDDEQRERQRYDQLAVIARILGd 331
                 ***************************************************976652222222212222222454.34455567777777777777776 PP

                 ........SHH...HHHTTS.......................................-HHHHHHHHHHT-SSGCCSTTHHHHHTSGGG CS
     Pkinase 222 ........etkeklpeasei.......................................seeakdllkkllkkdpkkRltaeellqhpyl 264
                                                                            s++ + llk ll+ dp kR++a+ +l   y+
  KOO24019.1 332 ptsaelagY----------SaeaveevrnvcakealsslgdeerslevdaklrdacpsaSPDEIALLKALLEIDPAKRPSAAAALGFAYF 411
                 544333332..........04455666777****************************************************99977665 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   89.7   0.0   5.1e-29   1.8e-25       4     164 ..      41     208 ..      38     222 .. 0.87
   2 !   10.8   0.0   6.1e-05      0.22     168     203 ..     253     289 ..     242     298 .. 0.85
   3 ?   -2.1   0.0      0.53   1.9e+03     214     252 ..     365     402 ..     351     405 .. 0.77

  Alignments for each domain:
  == domain 1  score: 89.7 bits;  conditional E-value: 5.1e-29
                  EEEEEEESSEEEEEEEEETTTTSSEEEEEEEEEST.TSSHHHHHHHHHHHHHHHTS-BTTB--EEEEEE.....SSSSEEEEEE--TTEBHHHHHHHT CS
  Pkinase_Tyr   4 gkklGeGafGkVvegtlkgekekkevkVavKtlke.eateeekeelleeakimkklkhpnivkllgvct.....keepllivteyvkgGdLlkfLrkk 95 
                   k +G+Ga++ V ++  +     + ++Va+K ++e  ++++e +++l+e++++++++hpn+++l g+ +       + ++++te++++ d++  +++k
   KOO24019.1  41 VKLIGSGAYSVVARAVET----ATGETVAIKRISEvFYDAQEAKKVLREIRLLRDFHHPNVISLRGLAMpanieTFDDIFMITEFMES-DMRRIIKSK 133
                  5789**********9998....8999*******763688899**************************9654433344********86.9*****998 PP

                  CTTTSBHHHHHHHHHHHHHHHHHHHHTTEEEST-SGGGEEEEE........TTEEEE-STTTHEETTTSSEEEETTS CS
  Pkinase_Tyr  96 ekekltlkdllsfalqvAkGmeyLeskklvHrdlaarNvLlse........nkvvkisDfGLardiekddeyvkkee 164
                    ++l+++++ sf++q+++G+ ++++ + +Hrdl   N+L+s+          vv+++DfGLar  ++  + ++ ee
   KOO24019.1 134 --QSLEVNKVRSFMAQLCAGLTHVHAISGIHRDLKPANILVSTgkvtpatpFGVVRLCDFGLARVDSNPRYAKRLEE 208
                  ..9***************************************99999998888***********8744444444443 PP

  == domain 2  score: 10.8 bits;  conditional E-value: 6.1e-05
                  GGGGS.-HHHHHHSEEEHHHHHHHHHHHHHHHHTTSS CS
  Pkinase_Tyr 168 pvkWm.apEslkekkftsksDvWsfGvllwEiftlge 203
                    +W+ apE++ ++k+  + D+W+ G +  E+++l  
   KOO24019.1 253 VTRWYrAPEVILRQKYGAAIDMWAVGCIFKELLELTP 289
                  567877**************************98765 PP

  == domain 3  score: -2.1 bits;  conditional E-value: 0.53
                  HHHHHHTTEES-BBTTSBHHHHHHHHHHT-SSGGGS--H CS
  Pkinase_Tyr 214 vleklkegkrlekpekcpeelyelmkkcweedpeeRptf 252
                      ++++ r ++p+  p+e++ l+k  +e dp++Rp+ 
   KOO24019.1 365 RSLEVDAKLRDACPSASPDEIA-LLKALLEIDPAKRPSA 402
                  5556677788889998898885.899999*******985 PP

>> Kdo  Lipopolysaccharide kinase (Kdo/WaaP) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.4   0.0   3.5e-08   0.00013      49     155 ..      72     176 ..      49     199 .. 0.90

  Alignments for each domain:
  == domain 1  score: 21.4 bits;  conditional E-value: 3.5e-08
         Kdo  49 yrfk.lgrtravrEfrllkrLeeagvavpkpvaagavkvgleyrAlllterlegaqdLedllakwaelaeelkrallkavgrliaklhragvnHadlya 146
                 +++   ++ ++ rE+rll+ +++  v  ++ +a+ a+ ++ +   +++te +e  +d+  ++++ ++l++++ r  + ++ +     h++   H+dl +
  KOO24019.1  72 VFYDaQEAKKVLREIRLLRDFHHPNVISLRGLAMPAN-IETFDDIFMITEFME--SDMRRIIKSKQSLEVNKVRSFMAQLCAGLTHVHAISGIHRDLKP 167
                 566656777899********************99875.7778899*******9..7*******9888******************************** PP

         Kdo 147 knillqqee 155
                  nil+ +++
  KOO24019.1 168 ANILVSTGK 176
                 *****9987 PP

>> APH  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.3   0.0     0.038   1.4e+02     145     179 ..      66      98 ..      44     104 .. 0.73
   2 !    9.0   0.0   0.00033       1.2     165     187 ..     157     177 ..     119     197 .. 0.76
   3 ?    0.9   0.1     0.098   3.5e+02      87     161 ..     314     378 ..     298     418 .. 0.53

  Alignments for each domain:
  == domain 1  score: 2.3 bits;  conditional E-value: 0.038
                 HHHHHHHHHHHHHHH--SSS-EEEE-SS-SGGGEE CS
         APH 145 leeleeqvlaalaallpgelptvllHgDlhpgNll 179
                 + ++ e +++a +a     l++  l +D+h +N++
  KOO24019.1  66 IKRISEVFYDAQEAKKV--LREIRLLRDFHHPNVI 98 
                 45555556677777777..7899999999999997 PP

  == domain 2  score: 9.0 bits;  conditional E-value: 0.00033
                 -EEEE-SS-SGGGEEEC..TTEE CS
         APH 165 ptvllHgDlhpgNllvdpddgrv 187
                 + + +H+Dl+p N+lv    g+v
  KOO24019.1 157 AISGIHRDLKPANILVS--TGKV 177
                 56679************..5554 PP

  == domain 3  score: 0.9 bits;  conditional E-value: 0.098
                 HHHHHHHHHHHHHHHHCCHHCH.-STTTB-SHHCHTCCHHHHHHCHHHCCCGCCTCCHHHHHHHHHHHHHHHH-- CS
         APH  87 saaqlpellealgeflaalhqvdpaalpladflaqdlellrqlesatarllaselldlleeleeqvlaalaallp 161
                  ++q++++l+ +++ l++     p+++ la+++a  +e+ r + +     l s+ ++   e+  +v a+l++  p
  KOO24019.1 314 RERQRYDQLAVIARILGD-----PTSAELAGYSAEAVEEVRNVCAK--EALSSLGDE---ERSLEVDAKLRDACP 378
                 344555555555555553.....33335555554444444444444..333333333...222223333333332 PP

>> Haspin_kinase  Haspin like kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.1   0.0   0.00015      0.55     230     258 ..     162     198 ..      48     214 .. 0.92

  Alignments for each domain:
  == domain 1  score: 9.1 bits;  conditional E-value: 0.00015
  Haspin_kinase 230 HRdLhldniLvdkn........lnvtlidlklsRles 258
                    HRdL+  niLv           + v l+d+ l+R+ s
     KOO24019.1 162 HRDLKPANILVSTGkvtpatpfGVVRLCDFGLARVDS 198
                    ***********9999*******************973 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (482 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       468  (0.026103); expected 358.6 (0.02)
Passed bias filter:                      434  (0.0242066); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.55u 0.27s 00:00:00.82 Elapsed: 00:00:00.42
# Mc/sec: 3415.28
//
Query:       KOO24020.1  [L=329]
Description: CRAL N-terminus family protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.3e-26   93.2   0.0    1.7e-26   92.8   0.0    1.1  1  CRAL_TRIO  CRAL/TRIO domain


Domain annotation for each model (and alignments):
>> CRAL_TRIO  CRAL/TRIO domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   92.8   0.0   9.4e-31   1.7e-26       4     159 .]     125     286 ..     122     286 .. 0.87

  Alignments for each domain:
  == domain 1  score: 92.8 bits;  conditional E-value: 9.4e-31
   CRAL_TRIO   4 leggkvgihgrDkegrpvlylrlgrfdpk.....klsleelvralvlvlerllkelee....dgqvegvtvviDlkglslskmlwkpisllkkilkilq 93 
                 +e++++g+ g  ++g+p ++ rlgrfd +     k   + ++   v  le+++ ++      +g+++ +  ++D +g+sls m    ++++k+++ki  
  KOO24020.1 125 REHFFAGFGGHARDGSPFFIERLGRFDVAgvnrdKAVFNFMMDCYVGYLETAFSACRVasahSGRMTRAHSIVDASGVSLSTMA--NVRVIKEVAKIGT 221
                 678899999999*****************6554322233666666777777776666688889******************999..59*********** PP

   CRAL_TRIO  94 dnyperlgkilivnaPklfkfafklvkpfldektreKikfvspsnteatlekyidpeqlpkelGGt 159
                  +ype+++k+ ivn+P+ f++++klv p+l+e+tr+K+ ++++     +l + id+  lp++lGG+
  KOO24020.1 222 SYYPEIMRKVTIVNLPWAFAAVWKLVAPLLPEQTRQKVAIYGSDF-LPALLDDIDEADLPAFLGGK 286
                 *****************************************6655.57*****************6 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (329 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       382  (0.0213063); expected 358.6 (0.02)
Passed bias filter:                      362  (0.0201908); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.22s 00:00:00.68 Elapsed: 00:00:00.40
# Mc/sec: 2482.01
//
Query:       KOO24021.1  [L=246]
Description: soul heme-binding protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.1e-43  147.9   0.6    1.1e-41  142.8   0.6    2.0  1  SOUL      SOUL heme-binding protein


Domain annotation for each model (and alignments):
>> SOUL  SOUL heme-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  142.8   0.6   6.1e-46   1.1e-41       1     167 [.      45     232 ..      45     233 .. 0.86

  Alignments for each domain:
  == domain 1  score: 142.8 bits;  conditional E-value: 6.1e-46
        SOUL   1 letpkYevlke..ekkyEvRryepavwaettvseasleearssgfrrLarYifgkNekeekiamtaPv..........vtkvke..........kevtm 77 
                 le p+Y+v+++   + +E+Rry+p+++aet v+ +s++ea+s+gfr++a+YifgkN+ ++k++mtaPv               +           ++ +
  KOO24021.1  45 LERPDYTVIRKlpGG-VELRRYAPYTIAETAVKTSSMREASSTGFRTVAGYIFGKNKPSQKMKMTAPVrmstsdgvtmA----MtapvriapseGTTRI 138
                 599******977444.*****************************************999********77777765540....145677788888999* PP

        SOUL  78 sfvlpskyqaeepPkPtddsrVkleevpertvavrrFsG.fateeevkeeaeeLreaLekdg....geekkdsyvlaqYnppf.tppflrrNEvwi 167
                 sfvl ++y+ +++P+P  +++Vk+++v+++++a+r+FsG  ++e++v++e+++  +a++++g    + + ++   +++Y +pf tp +lrrNEv +
  KOO24021.1 139 SFVLEKRYSPQTAPAP-LSRDVKVRKVQPHILAARTFSGpPPSEQRVEKEKQAILSAVKAAGlkpsA-SGDEGTLVYGYHDPFiTPSWLRRNEVCV 232
                 ****************.555*******************9999***************888886531.2455678889987753899*******87 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (246 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       480  (0.0267723); expected 358.6 (0.02)
Passed bias filter:                      397  (0.0221429); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.24s 00:00:00.64 Elapsed: 00:00:00.38
# Mc/sec: 1935.64
//
Query:       KOO24022.1  [L=132]
Description: hypothetical protein Ctob_001587 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      0.006   16.8   1.5     0.0063   16.8   0.5    1.5  2  DUF3382          Domain of unknown function (DUF3382)
  ------ inclusion threshold ------
      0.075   12.4   0.0      0.095   12.0   0.0    1.1  1  Sugar_transport  Sugar transport protein
       0.18   12.4   2.2       0.87   10.2   1.3    2.2  2  OAD_gamma        Oxaloacetate decarboxylase, gamma chain


Domain annotation for each model (and alignments):
>> DUF3382  Domain of unknown function (DUF3382)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.0      0.87   5.2e+03      52      52 ..      13      13 ..       2      39 .. 0.58
   2 !   16.8   0.5   1.1e-06    0.0063       6      85 ..      45     123 ..      41     129 .. 0.75

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 0.87
     DUF3382 52 q 52
                 
  KOO24022.1 13 A 13
                1 PP

  == domain 2  score: 16.8 bits;  conditional E-value: 1.1e-06
     DUF3382   6 AliaallalvlfvpilGlqleldgtrlvlep.rwglvaiavavvfvgqLlrplllqalkarkklkkveskadgvlvltqrw 85 
                 A++a+   + l+ p  Glql+l +  +v+   +w+  +++++  fv qLl p ++ a  +rkk++++e++a+++ +++ r 
  KOO24022.1  45 AAFAGQGQAPLTPPSGGLQLTLGSLLVVYLAnNWK--IVLALQAFVLQLLQPFFSAAEVRRKKAEEAEQAAADAAARKARA 123
                 55666666667777779988888766555443555..5566778*************************999998875554 PP

>> Sugar_transport  Sugar transport protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   1.6e-05     0.095      79     142 ..      50     109 ..      41     120 .. 0.79

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 1.6e-05
  Sugar_transport  79 vgvskamPistglqLvgasLigvlvlgeWstsiqvilGllaliliviGivltslkekkekksee 142
                       g +  +P s glqL  +sL+ v + ++W+    ++l l a +l +   ++++ + +++k++e+
       KOO24022.1  50 QGQAPLTPPSGGLQLTLGSLLVVYLANNWK----IVLALQAFVLQLLQPFFSAAEVRRKKAEEA 109
                      566667899********************6....788899999999999998887777666665 PP

>> OAD_gamma  Oxaloacetate decarboxylase, gamma chain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.6   0.0      0.14   8.5e+02      20      52 ..       7      39 ..       6      53 .. 0.61
   2 ?   10.2   1.3   0.00015      0.87       4      56 ..      62     120 ..      59     131 .. 0.65

  Alignments for each domain:
  == domain 1  score: 0.6 bits;  conditional E-value: 0.14
   OAD_gamma 20 lLslvislfskiikkkakkkkkkakaaaaaaaa 52
                +L l + l  ++ +k ++  +++a+ +++a ++
  KOO24022.1  7 ILALTFALTTALDAKWTPNGEAPAPFSTKARQQ 39
                566666666666666666666666555555544 PP

  == domain 2  score: 10.2 bits;  conditional E-value: 0.00015
   OAD_gamma   4 llltllGmgvVF......vvLilLslvislfskiikkkakkkkkkakaaaaaaaaaaaa 56 
                 l+ltl +++vV       +vL+l  +v++l++ ++++ + + kk+++a++aaa aaa +
  KOO24022.1  62 LQLTLGSLLVVYlannwkIVLALQAFVLQLLQPFFSAAEVRRKKAEEAEQAAADAAARK 120
                 56666666666522222258999999***988888888777777777777776666554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (132 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1172  (0.065369); expected 358.6 (0.02)
Passed bias filter:                      543  (0.0302861); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.44u 0.23s 00:00:00.67 Elapsed: 00:00:00.42
# Mc/sec: 949.17
//
Query:       KOO24023.1  [L=170]
Description: hypothetical protein Ctob_001588, partial [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.1e-10   40.2   0.3    1.7e-09   38.2   0.0    1.9  2  NADH-u_ox-rdase  NADH-ubiquinone oxidoreductase complex I, 21


Domain annotation for each model (and alignments):
>> NADH-u_ox-rdase  NADH-ubiquinone oxidoreductase complex I, 21 kDa subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.2   0.0     0.095   1.7e+03      61      78 ..      36      54 ..       6      56 .. 0.70
   2 !   38.2   0.0   9.5e-14   1.7e-09       3      81 ..      78     153 ..      76     154 .. 0.85

  Alignments for each domain:
  == domain 1  score: -0.2 bits;  conditional E-value: 0.095
  NADH-u_ox-rdase 61 gflg.gfllayqnssqRLk 78
                     +++g  +++a+++  qRL+
       KOO24023.1 36 RVTGwQLCVAFERRHQRLT 54
                     4455568999999999985 PP

  == domain 2  score: 38.2 bits;  conditional E-value: 9.5e-14
  NADH-u_ox-rdase   3 aYpvIdsdPsfsrvlrnfrpsDYvkaaaita.afplallaleklsPsvagkamtlagligflg.gfllayqnssqRLkGfr 81 
                      ++pvI+++P+   +lrnf + D + ++++t+ +   ++ a++ l+++       +  +++ ++  f + +q s +RL+G r
       KOO24023.1  78 PFPVINRKPTLGATLRNFTFGDLCSMFGCTVaGGVWGFAAGKPLRRH-----GSINLAMTACSvAFAYSFQASWHRLTGQR 153
                      8****************************998888888888844433.....35666777788799*************87 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (170 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       273  (0.0152267); expected 358.6 (0.02)
Passed bias filter:                      211  (0.0117686); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.23s 00:00:00.62 Elapsed: 00:00:00.39
# Mc/sec: 1311.15
//
Query:       KOO24024.1  [L=188]
Description: lysine-specific demethylase 8 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.5e-32  112.6   0.0    2.8e-32  112.4   0.0    1.0  1  Cupin_8   Cupin-like domain
    9.9e-09   35.1   0.2    6.1e-08   32.5   0.2    1.9  1  Cupin_4   Cupin superfamily protein
    0.00022   20.9   0.1    0.00088   18.9   0.0    2.0  2  Cupin_2   Cupin domain
    0.00029   21.3   0.1     0.0055   17.1   0.0    2.1  2  JmjC      JmjC domain, hydroxylase


Domain annotation for each model (and alignments):
>> Cupin_8  Cupin-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  112.4   0.0   6.3e-36   2.8e-32      98     248 ..      43     188 .]       9     188 .] 0.87

  Alignments for each domain:
  == domain 1  score: 112.4 bits;  conditional E-value: 6.3e-36
     Cupin_8  98 yaylqnanlasefpelkedsdlpfateafgkkpeavnlWlGnsasvsslHkDhyeNlycvvrGrKkftLfpPsdapflyea......slsptedgtvvs 190
                 + yl++ nl +++p+l++d+ +p    ++ +  ++++ WlG++++v+ lH D y+N++++v G K + Lf+  + p+ly++            ++ +vs
  KOO24024.1  43 VGYLAQHNLFEQIPRLRRDFAIPA---LLAGGVQHMHAWLGPEGTVTPLHFDSYDNVLVQVVGHKLVSLFDSGQTPRLYPKegggtgV----DAQGNVS 134
                 678899************999987...444456899*********************************************7776542....45678** PP

     Cupin_8 191 svdveepdlekfprlkdakkalevtlnaGevLylPalWfHeVkslaeeplhlavnywy 248
                  vdve+pd  +fp++ +a   +e+ l +Ge Ly+Pa+ +H+V+sl  +p + ++ +w+
  KOO24024.1 135 AVDVEAPDMGRFPEFAHA-VGYECVLGPGEGLYIPAGCWHHVRSL--SP-SWSISFWF 188
                 ******************.9*************************..98.99*****9 PP

>> Cupin_4  Cupin superfamily protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.5   0.2   1.4e-11   6.1e-08     116     207 ..      75     186 ..      33     188 .] 0.79

  Alignments for each domain:
  == domain 1  score: 32.5 bits;  conditional E-value: 1.4e-11
                 EEEEEE-TTBBSS-S.EE-SSEEEEEEEEC-EEEEEE-...................SCCCTTSSSEE--TTCCG--..S-SE..EEEE-TT-EEEE-T CS
     Cupin_4 116 snvYatpggsqgvgp.HyDdyDVfllQleGrkrWrvyk...................ptvpelelkseeplkildef..epve..dfvLepGDlLYlPr 190
                   +++ p+g  +v p H+D+yD +l+Q+ G+k   + +                   +   ++ + + ++++++ ef  +     + vL pG  LY+P 
  KOO24024.1  75 MHAWLGPEG--TVTPlHFDSYDNVLVQVVGHKLVSLFDsgqtprlypkegggtgvdaQGNVSAVDVEAPDMGRFPEFahA--VgyECVLGPGEGLYIPA 169
                 456778888..55544****************999998999999999****98876655666777788888888888533..336************** PP

                 T-EEEEEBBT-CCEEEE CS
     Cupin_4 191 gviHqgvaedesltlSv 207
                 g++H+ +++++s ++S+
  KOO24024.1 170 GCWHHVRSLSPSWSISF 186
                 **********9999986 PP

>> Cupin_2  Cupin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.0      0.93   4.2e+03      12      19 ..      30      37 ..      21      43 .. 0.57
   2 !   18.9   0.0     2e-07   0.00088      36      61 ..     154     179 ..     148     184 .. 0.88

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 0.93
                EEECSSSE CS
     Cupin_2 12 pshrHpge 19
                 +h H  +
  KOO24024.1 30 ARHPHAVS 37
                35555554 PP

  == domain 2  score: 18.9 bits;  conditional E-value: 2e-07
                 TEEEEEETTEEEEE-TT-EEEEEE-S CS
     Cupin_2  36 geeveleaGdsvyfpagtpHrfrNtg 61 
                 g e++l++G+ +y+pag +H++r  +
  KOO24024.1 154 GYECVLGPGEGLYIPAGCWHHVRSLS 179
                 5689******************9765 PP

>> JmjC  JmjC domain, hydroxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.0   0.0     0.059   2.6e+02       4      21 ..      79      96 ..      76     109 .. 0.83
   2 !   17.1   0.0   1.2e-06    0.0055      80     112 ..     154     186 ..     148     188 .] 0.89

  Alignments for each domain:
  == domain 1  score: 2.0 bits;  conditional E-value: 0.059
                EE-TT-EEEEE--GGG-E CS
        JmjC  4 lgmpksttpwhiedqgly 21
                lg++++ tp h ++++  
  KOO24024.1 79 LGPEGTVTPLHFDSYDNV 96
                799**********98865 PP

  == domain 2  score: 17.1 bits;  conditional E-value: 1.2e-06
                 -EEEEE-TT-EEEE-TT-EEEEEESSSEEEEEE CS
        JmjC  80 vyrfvqkpgefVfvfpgayHsvfnlgfniaeav 112
                  y++v  pge +++++g++H v +l  + ++++
  KOO24024.1 154 GYECVLGPGEGLYIPAGCWHHVRSLSPSWSISF 186
                 699*********************999988876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (188 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       410  (0.022868); expected 358.6 (0.02)
Passed bias filter:                      323  (0.0180155); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.40u 0.25s 00:00:00.65 Elapsed: 00:00:00.40
# Mc/sec: 1422.89
//
Query:       KOO24025.1  [L=301]
Description: serine threonine-protein kinase nek4 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.2e-57  195.3   0.0    1.4e-57  195.1   0.0    1.0  1  Pkinase         Protein kinase domain
    4.7e-36  124.4   0.0    5.7e-36  124.1   0.0    1.0  1  Pkinase_Tyr     Protein tyrosine kinase
    9.1e-08   31.8   0.0    4.5e-06   26.2   0.0    2.2  2  Kinase-like     Kinase-like
    0.00064   19.7   0.9      0.032   14.1   0.5    2.2  2  APH             Phosphotransferase enzyme family
     0.0009   18.1   0.0     0.0014   17.5   0.0    1.2  1  Pkinase_fungal  Fungal protein kinase
     0.0048   15.9   0.0      0.009   15.0   0.0    1.5  1  Haspin_kinase   Haspin like kinase domain
  ------ inclusion threshold ------
       0.07   12.5   0.1        0.1   12.0   0.1    1.2  1  Kdo             Lipopolysaccharide kinase (Kdo/WaaP) family


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  195.1   0.0   5.3e-61   1.4e-57       1     263 [.       7     270 ..       7     271 .. 0.91

  Alignments for each domain:
  == domain 1  score: 195.1 bits;  conditional E-value: 5.3e-61
                 EEEEEEEEEESSEEEEEEEETTTTEEEEEEEEECHCHCHHHHHHHHHHHHHHHHHSCTTB--EEEEEEESSEEEEEEE--TTEBHHHHHH....HHSS- CS
     Pkinase   1 yekleklGeGsfGkVykaveketgkivAvKkikkekakkkkekkvlrEikilkklkhpnivrlyevfeekdelylvleyveggeladlle....rkgsl 95 
                 y+k++ lG GsfG Vy ++e +tg   ++K+++ +   +k+ k++  E+++l+++kh +i+ + ++  + + l++v+++++gg+l +l++    r   l
  KOO24025.1   7 YSKIKALGAGSFGDVYLVKEVATGARAVLKEVELKGLASKDLKAAHDEVTVLQRMKHHHIIGYRDSSVQGSLLLIVMDFADGGDLGNLIRqqeaRGEPL 105
                 78899************************************9************************************************88755556* PP

                 -HHHHHHHHHHHHHHHHHHH.HTTEE-SS-SGGGEEEETTTEEEE-SGTTSEESSSSCS.BCTTTSCGGGS-HHHHTTSCBSHHHHHHHHHHHHHHHHH CS
     Pkinase  96 seeeakkiakqilegleylH.skgiiHrDlKpeNiLidekgelKitDFGlakelesssk.ltsfvgtseYlAPEvlkeneyskkvDvWslGvilyellt 192
                 +ee++ ki++q + +l+y+H   +++HrDlKp+Ni++   g++K++DFG+ak l  ++  +++ +gt+ +++PE++++ +y++++DvW+ G++ly++lt
  KOO24025.1 106 AEERVCKIVAQAVDALAYCHhTLHLLHRDLKPDNIFLTAAGDVKVGDFGVAKTLLATNAmAKTKCGTPLFMSPELMSGMPYDRSADVWAFGCVLYNVLT 204
                 ********************5668****************************9998888799************************************* PP

                 SS-STTTSSHHHHHHHHHHTHHHHHHHCTSHH...HHHTTS-HHHHHHHHHHT-SSGCCSTTHHHHHTSGG CS
     Pkinase 193 gkppfsgekgkekvekeldqlekilkilgetkeklpeaseiseeakdllkkllkkdpkkRltaeellqhpy 263
                    p+ ++ ++   +  ++    ++ + + +   +p + + s e+++ll++ll+k   +R+++++++  p+
  KOO24025.1 205 LAAPWIDRVSE---KGGMMA--LMRLVCHSELDLTPARGTYSAELISLLEQLLSKRAAERPSFKDVMGLPF 270
                 ******33333...333333..4445555666677888999************************998777 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  124.1   0.0   2.2e-39   5.7e-36       4     256 ..      10     266 ..       7     268 .. 0.85

  Alignments for each domain:
  == domain 1  score: 124.1 bits;  conditional E-value: 2.2e-39
                  EEEEEEESSEEEEEEEEETTTTSSEEEEEEEEES.TTSSHHHHHHHHHHHHHHHTS-BTTB--EEEEEESSSSEEEEEE--TTEBHHHHHHHT..CTT CS
  Pkinase_Tyr   4 gkklGeGafGkVvegtlkgekekkevkVavKtlk.eeateeekeelleeakimkklkhpnivkllgvctkeepllivteyvkgGdLlkfLrkk..eke 98 
                   k lG+G+fG+V+  +       +  + ++K ++ ++  +++ ++  +e+++++++kh++i+ +    ++++ lliv+++++gGdL + +r++  + e
   KOO24025.1  10 IKALGAGSFGDVYLVKEV----ATGARAVLKEVElKGLASKDLKAAHDEVTVLQRMKHHHIIGYRDSSVQGSLLLIVMDFADGGDLGNLIRQQeaRGE 103
                  689**********99888....566666667664245566779999*********************************************9955678 PP

                  TSBHHHHHHHHHHHHHHHHHHHHT.TEEEST-SGGGEEEEETTEEEE-STTTHEETTTSSEEEETTSSTSGGGGS-HHHHHHSEEEHHHHHHHHHHHH CS
  Pkinase_Tyr  99 kltlkdllsfalqvAkGmeyLesk.klvHrdlaarNvLlsenkvvkisDfGLardiekddeyvkkeeaklpvkWmapEslkekkftsksDvWsfGvll 195
                  +l  ++++++++q  ++++y ++  +l+Hrdl   N++l+    vk++DfG+a+++    +  +k+++ +p+ +m+pE ++ + +  ++DvW+fG +l
   KOO24025.1 104 PLAEERVCKIVAQAVDALAYCHHTlHLLHRDLKPDNIFLTAAGDVKVGDFGVAKTL-LATNAMAKTKCGTPL-FMSPELMSGMPYDRSADVWAFGCVL 199
                  99******************987538******************************.566666777777776.8************************ PP

                  HHHHTTSSGTTTTSHHHH....HHHHHHTTEE..S-BBTTSBHHHHHHHHHHT-SSGGGS--HHHHH CS
  Pkinase_Tyr 196 wEiftlgespypglknee....vleklkegkr..lekpekcpeelyelmkkcweedpeeRptfselv 256
                  + ++tl++  + +++++     +++ + +++    ++  + ++el +l+++ ++++++eRp+f++++
   KOO24025.1 200 YNVLTLAAPWIDRVSEKGgmmaLMRLVCHSELdlTPARGTYSAELISLLEQLLSKRAAERPSFKDVM 266
                  *****9988877775544433355555333332256667889**********************986 PP

>> Kinase-like  Kinase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.6   0.0     0.014        35      17      70 ..      10      62 ..       6      66 .. 0.82
   2 !   26.2   0.0   1.8e-09   4.5e-06     110     261 ..      74     220 ..      58     259 .. 0.73

  Alignments for each domain:
  == domain 1  score: 3.6 bits;  conditional E-value: 0.014
  Kinase-like 17 gellkkgdrsvvfevkdqetgeplavkvfllpseaskkdlerlkeqelairllr 70
                  + l+ g ++ v++vk+++tg   ++k   l+  a +kdl+  ++++  +++++
   KOO24025.1 10 IKALGAGSFGDVYLVKEVATGARAVLKEVELKGLA-SKDLKAAHDEVTVLQRMK 62
                 5678999999***********99999988887665.579999999988888765 PP

  == domain 2  score: 26.2 bits;  conditional E-value: 1.8e-09
  Kinase-like 110 vvnallllpaasvdleilnkvlqkrsethkkletiarlllTlqlirlaanLqa.kglvhgkftvdnllldekgglmlggftaLvragtkvvlseve.. 204
                  v   lll+     d + l++++ +++ + ++l++     + +q++   a+ ++ + l+h ++++dn++l   g +++g+f+   +  +   +++++  
   KOO24025.1  74 VQGSLLLIVMDFADGGDLGNLIRQQEARGEPLAEERVCKIVAQAVDALAYCHHtLHLLHRDLKPDNIFLTAAGDVKVGDFGVAKTLLATNAMAKTKcg 171
                  55555555555556677888888888885555554444566799998888876379************************987776665555555534 PP

  Kinase-like 205 .kgfaPpEllgsrggytrknktkmthkldaWqlGlviyriwclklPltlateeakeew 261
                     f  pEl++  + y r        + d+W+ G v y +  l +P     +e +   
   KOO24025.1 172 tPLFMSPELMSG-MPYDR--------SADVWAFGCVLYNVLTLAAPWIDRVSEKGGMM 220
                  455899999988.55555........89******************877766665555 PP

>> APH  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.9   0.0    0.0086        22       2      95 ..      10     102 ..       9     115 .. 0.72
   2 !   14.1   0.5   1.3e-05     0.032     146     194 ..     111     154 ..      94     160 .. 0.60

  Alignments for each domain:
  == domain 1  score: 4.9 bits;  conditional E-value: 0.0086
                 EEEE--.SSCEEEEEEETT.-.-EEEEEE-TT....S-HHHHHHHHHHHHHHHHTT-B--B-CTTBS-EEETTEEEEEEE----EE-SSHHHHHHHHHH CS
         APH   2 vrelsggasnrtylvttpa.g.ryvlrrnppa....raaeeirrevallrlLakagvpvPevlagdtddeeigllfalieyvpgrsllrklsaaqlpel 94 
                 +++l++g   ++ylv++ a g r vl+ ++ +    +    +++ev +l+ +  +      ++ ++ +  +  ll  ++ + +g +l +    +q+++ 
  KOO24025.1  10 IKALGAGSFGDVYLVKEVAtGaRAVLKEVELKglasKDLKAAHDEVTVLQRMKHHH-----IIGYRDSSVQGSLLLIVMDFADGGDLGN--LIRQQEAR 101
                 78889999999*****999768***9998888843444444555555666666554.....5888888888888999999999999999..33444444 PP

                 H CS
         APH  95 l 95 
                 +
  KOO24025.1 102 G 102
                 4 PP

  == domain 2  score: 14.1 bits;  conditional E-value: 1.3e-05
                 HHHHHHHHHHHHHH--SSS-EEEE-SS-SGGGEEEC..TTEEEEE---T CS
         APH 146 eeleeqvlaalaallpgelptvllHgDlhpgNllvdpddgrvtGviDfe 194
                  ++ +q+ +ala     +    llH+Dl+p+N+ ++++++    v Df+
  KOO24025.1 111 CKIVAQAVDALAYC---HHTLHLLHRDLKPDNIFLTAAGDVK--VGDFG 154
                 33333444444444...44688**************555554..55665 PP

>> Pkinase_fungal  Fungal protein kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5   0.0   5.4e-07    0.0014     310     388 ..     112     183 ..      93     200 .. 0.81

  Alignments for each domain:
  == domain 1  score: 17.5 bits;  conditional E-value: 5.4e-07
  Pkinase_fungal 310 ealrDaIkghrsLflkagiLHrDiSenNilitdskkegerkglLiDLDlakelsddssesgarertGTleFmaievlkg 388
                     + +++a+ ++   +++  +LHrD   +Ni +t     +     + D+ +ak+l    +++ a+++ GT+ Fm+ e+++g
      KOO24025.1 112 KIVAQAVDALAYCHHTLHLLHRDLKPDNIFLT-----AAGDVKVGDFGVAKTLLA--TNAMAKTKCGTPLFMSPELMSG 183
                     456677777777777777**************.....66777899********95..6666789*********999986 PP

>> Haspin_kinase  Haspin like kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.0   3.5e-06     0.009     168     257 ..      63     159 ..       5     177 .. 0.62

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 3.5e-06
  Haspin_kinase 168 qdkvlkekpdfyseqqlflvlllkdkGtdLeev........klkswkqalsifwqivkiLyvaEtkfeFEHRdLhldniLvdknlnvtlidlklsR 255
                    + +++  + d+  ++ l l+++    G dL ++        +    + + +i  q v  L+     +++ HRdL+ dni + +++ v + d+ +++
     KOO24025.1  63 HHHIIGYR-DSSVQGSLLLIVMDFADGGDLGNLirqqeargEPLAEERVCKIVAQAVDALAYCHHTLHLLHRDLKPDNIFLTAAGDVKVGDFGVAK 157
                    33333333.444444433333322233344333322222112223367899****************************************99988 PP

  Haspin_kinase 256 le 257
                      
     KOO24025.1 158 TL 159
                    76 PP

>> Kdo  Lipopolysaccharide kinase (Kdo/WaaP) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.1   3.9e-05       0.1      94     155 ..      80     146 ..      55     166 .. 0.75

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 3.9e-05
         Kdo  94 llterlegaqdLedllakwae.....laeelkrallkavgrliaklhragvnHadlyaknillqqee 155
                 l++ + ++  dL +l+++ +       +e++ +   +av +l+   h +++ H+dl + ni+l +++
  KOO24025.1  80 LIVMDFADGGDLGNLIRQQEArgeplAEERVCKIVAQAVDALAYCHHTLHLLHRDLKPDNIFLTAAG 146
                 5566666777777777775555444444555555666666667777*****************9987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (301 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       358  (0.0199677); expected 358.6 (0.02)
Passed bias filter:                      339  (0.0189079); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.51u 0.28s 00:00:00.79 Elapsed: 00:00:00.44
# Mc/sec: 2034.55
//
Query:       KOO24026.1  [L=136]
Description: hypothetical protein Ctob_001578 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (136 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       557  (0.031067); expected 358.6 (0.02)
Passed bias filter:                      257  (0.0143343); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.44u 0.27s 00:00:00.71 Elapsed: 00:00:00.43
# Mc/sec: 947.57
//
Query:       KOO24027.1  [L=469]
Description: cyanophycinase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    0.00016   21.4   0.0     0.0015   18.2   0.0    2.3  1  Peptidase_S51  Peptidase family S51


Domain annotation for each model (and alignments):
>> Peptidase_S51  Peptidase family S51
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.2   0.0   8.5e-08    0.0015      75     140 ..     112     189 ..      37     207 .. 0.82

  Alignments for each domain:
  == domain 1  score: 18.2 bits;  conditional E-value: 8.5e-08
                    HHHHHHHHSSEEEE--S-HHHHHHHHHHTTHH............HHHHHHH.HTT-EEEEETHHHHTTSSB-GGGTTTS CS
  Peptidase_S51  75 eieeklleadviyvgGGntfrLlkllketgld............kllreav.qqglvyiGvSAGaivagesiettsysd 140
                    +i e++++ d+   gGG++ r++k+++++++              +l+e+  ++g v++G+SAG+ +   +++ t+  d
     KOO24027.1 112 AIIEQIKSCDGFWFGGGDQTRIMKAWYDNNVTgklntrtptpamTALLERFeEHGGVLAGSSAGTDCHNAKVMVTD-GD 189
                    45566**********************998752111222222125677888899*************988877766.45 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (469 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       362  (0.0201908); expected 358.6 (0.02)
Passed bias filter:                      284  (0.0158403); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.25s 00:00:00.74 Elapsed: 00:00:00.41
# Mc/sec: 3419.42
//
Query:       KOO24028.1  [L=283]
Description: solute carrier family 25 member 40-like protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.1e-38  131.0   2.9    4.8e-18   64.9   0.2    3.1  3  Mito_carr  Mitochondrial carrier protein


Domain annotation for each model (and alignments):
>> Mito_carr  Mitochondrial carrier protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.4   0.0   8.7e-08    0.0016      54      90 ..      20      56 ..       4      61 .. 0.88
   2 !   46.8   0.2   1.2e-16   2.1e-12       7      89 ..      68     143 ..      63     148 .. 0.91
   3 !   64.9   0.2   2.7e-22   4.8e-18       5      92 ..     158     251 ..     154     254 .. 0.87

  Alignments for each domain:
  == domain 1  score: 18.4 bits;  conditional E-value: 8.7e-08
                HHHHHHHHHGGGTTHHHHHHHHHHHHHHHHHHHHHHH CS
   Mito_carr 54 kiykeeGlrglyrGllpnllrvapasalkfvlyetlk 90
                 +++ eG  +ly+Gl++ l+ + p ++l  v+ye  +
  KOO24028.1 20 ALLRAEGAPALYKGLGAHLTASLPGNGLFYVAYEAAR 56
                5789******************************876 PP

  == domain 2  score: 46.8 bits;  conditional E-value: 1.2e-16
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSTTTSCSSHHHHHHHHHHHHHHHGGGTTHHHHHHHHHHHHHHHHHHHHHH CS
   Mito_carr   7 kellaGglagavatlvttPldvvKtrlqtqkksskksksaaildvlkkiykeeGlrglyrGllpnllrvapasalkfvlyetl 89 
                 ++ laG ++++++ l+ tP++vvK r ++ ++ s+       l+vl+ +++ +G +glyrGl++  l  ap+ +l+f++y++l
  KOO24028.1  68 ASTLAGIAGCLASLLIYTPMEVVKQRAMVTRGASS-------LSVLRDLLRVDGPSGLYRGLGAGALTWAPYFSLYFLAYDFL 143
                 56788888888999999*************99975.......79*************************************87 PP

  == domain 3  score: 64.9 bits;  conditional E-value: 2.7e-22
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSTTTSCSS......HHHHHHHHHHHHHHHGGGTTHHHHHHHHHHHHHHHHHHHHHHHHH CS
   Mito_carr   5 vlkellaGglagavatlvttPldvvKtrlqtqkksskksksaa......ildvlkkiykeeGlrglyrGllpnllrvapasalkfvlyetlkrl 92 
                 ++  l +G+lag++a+ +t+P+dvvKtrlq+ +   ++ + +       +l v ++i+ +eG++g+ rGllp+++  ap s+l+ +ly +++r 
  KOO24028.1 158 FVTALGCGLLAGMGASALTNPFDVVKTRLQVGGAGLAAMQVTDvaseagVLAVARSIVAKEGISGFARGLLPRVMLLAPLSSLTISLYSVVHRA 251
                 567789*************************666655544444555566***************************************999875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (283 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       300  (0.0167327); expected 358.6 (0.02)
Passed bias filter:                      185  (0.0103185); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.23s 00:00:00.61 Elapsed: 00:00:00.37
# Mc/sec: 2275.00
//
Query:       KOO24029.1  [L=266]
Description: hypothetical protein Ctob_001596 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.3e-34  119.2   5.7    2.7e-34  119.0   5.7    1.0  1  Use1        Membrane fusion protein Use1
  ------ inclusion threshold ------
      0.024   14.2   0.8      0.074   12.7   0.0    2.0  2  DUF4795     Domain of unknown function (DUF4795)
       0.14   12.4  17.8      0.049   13.9  11.3    2.1  2  ATG16       Autophagy protein 16 (ATG16)
       0.24   11.8   8.8       0.68   10.3   0.1    3.0  3  CC2-LZ      Leucine zipper of domain CC2 of NEMO, NF-kappa-B 
          3    7.3   8.5        9.2    5.7   1.0    3.0  3  TMCO5       TMCO5 family
        3.2    7.6   5.5         27    4.6   1.3    2.7  2  QLQ         QLQ


Domain annotation for each model (and alignments):
>> Use1  Membrane fusion protein Use1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  119.0   5.7     9e-38   2.7e-34       4     246 ..       7     260 ..       5     261 .. 0.89

  Alignments for each domain:
  == domain 1  score: 119.0 bits;  conditional E-value: 9e-38
        Use1   4 iNlrrLLarceelakeerse.newrLekyvkaleemleeLkkesskpskevlkeYsekveaLkllleaeklssteekalanqllapgeeskeekeeske 101
                  Nl rLL +ce+l  + + + +  r+e y+ +l+ +  eLk++s+  s+++l e+++k++ L++ll+  kl s +   la  +   +     + + s++
  KOO24029.1   7 TNLERLLRSCERLSGDMHGRaDRQRFESYLVVLQRQWRELKAQSQ-CSEDALAEFRRKIQRLAELLDEGKLLSGAGSSLALTQAHCN----AHLSRSQA 100
                 59************9977554689********************9.9*********************9999777777766666555....33344444 PP

        Use1 102 reeaskelrqkekakyqkelrkellgkndsssspekekeskkk...............ksdedldavlkkhenlqEklaeemlsLarnLKenslaasqi 185
                 ++e ++  r++ek+++q+ lr++l  +   s +p++e++++                  ++e+l a+l+ ++  qE l++++l  + +L+++s  a + 
  KOO24029.1 101 NAELVN--RLREKERMQQALRSQLSLEVGPSDAPVSEASARAVqtgraaatgaratggMEAEALRATLQTERAAQEHLMSDLLRSVGELRDRSVQARHA 197
                 455555..55677788999*****999999999998888888799*************9**************************************** PP

        Use1 186 ikkDtetlsksekaadqnlaslkkeserlee.h.skskvkcllwlllfvvlvvFismvlfiri 246
                 +++D++tl+ ++k++d+n ++l++ s+rl     + ++ +cl+ ++l +v vvF+   l++++
  KOO24029.1 198 VREDNNTLDMTSKEIDKNQSQLGTISARLRAqImAARSSSCLVFFMLLFVAVVFFLTLLLMKV 260
                 *****************************9954799**************************8 PP

>> DUF4795  Domain of unknown function (DUF4795)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   2.5e-05     0.074     110     176 ..      11      70 ..       4     117 .. 0.73
   2 ?   -0.7   0.2      0.31   9.3e+02      89     124 ..     176     209 ..     155     233 .. 0.53

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 2.5e-05
     DUF4795 110 alkkaldtLqeelkekldrlelepLkeqleerlkelqkelqeamekedkedeaaglrkkLlerfdcI 176
                 +l +  + L+ ++  + dr+ +e+    l+++++el+ + q        ed+ a++r+k+ +r++ +
  KOO24029.1  11 RLLRSCERLSGDMHGRADRQRFESYLVVLQRQWRELKAQSQ----CS--EDALAEFRRKI-QRLAEL 70 
                 56677889999999999999999999999999*99995544....22..46789999999.687766 PP

  == domain 2  score: -0.7 bits;  conditional E-value: 0.31
     DUF4795  89 akkeLekmleellekleeqeealkkaldtLqeelke 124
                  +++L + + el++++ ++ +a+++  +tL   +++
  KOO24029.1 176 LMSDLLRSVGELRDRSVQARHAVREDNNTLD--MTS 209
                 3444444444444444444444444444444..222 PP

>> ATG16  Autophagy protein 16 (ATG16)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.4   0.4     0.052   1.5e+02      98     137 ..      30      69 ..      25      77 .. 0.81
   2 ?   13.9  11.3   1.6e-05     0.049      15     142 ..      99     229 ..      84     239 .. 0.74

  Alignments for each domain:
  == domain 1  score: 2.4 bits;  conditional E-value: 0.052
       ATG16  98 gelaqrllelneelqkleeklkedeerlaeleaeraalet 137
                 + +++ l+ l+ + ++l+++++  e +lae ++++++l +
  KOO24029.1  30 QRFESYLVVLQRQWRELKAQSQCSEDALAEFRRKIQRLAE 69 
                 5667788889999999999999999999999999888876 PP

  == domain 2  score: 13.9 bits;  conditional E-value: 1.6e-05
       ATG16  15 kafaeliqaynrLldrtsaleaenaklekaaasaks...sksskksakekeasasq........snskqsakiqsleqklaqlreelaelyksrgelaq 102
                 +a+ael    nrL ++ + ++a +++l+ +   + +   ++s +++++ +     +         +++ +a  ++l++++a++ + +++l++s gel +
  KOO24029.1  99 QANAEL---VNRLREKERMQQALRSQLSLEVGPSDApvsEASARAVQTGR-----AaatgaratGGMEAEALRATLQTERAAQEHLMSDLLRSVGELRD 189
                 444444...35566666666666666655554444466422222222222.....1233467888899999999999999999999************* PP

       ATG16 103 rllelneelqkleeklkedeerlaeleaeraaletklkdr 142
                 r +++  ++++++++l   ++++++ +++  +++ +l+ +
  KOO24029.1 190 RSVQARHAVREDNNTLDMTSKEIDKNQSQLGTISARLRAQ 229
                 ******************************9999999865 PP

>> CC2-LZ  Leucine zipper of domain CC2 of NEMO, NF-kappa-B essential modulator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.1   0.00023      0.68       7      45 ..      34      72 ..      28      78 .. 0.83
   2 ?   -1.3   0.2      0.95   2.8e+03      80      89 ..     109     118 ..      88     123 .. 0.58
   3 ?    5.9   0.7    0.0056        17       5      61 ..     172     230 ..     163     232 .. 0.84

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.00023
      CC2-LZ  7 eaekvkkeeieeLkaqlqaaeealaakqeeidelkeeik 45
                    v +++  eLkaq q+ e+ala+ +++i++l+e + 
  KOO24029.1 34 SYLVVLQRQWRELKAQSQCSEDALAEFRRKIQRLAELLD 72
                55555689999***********************98765 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 0.95
      CC2-LZ  80 eekerlaaql 89 
                  eker+++ l
  KOO24029.1 109 REKERMQQAL 118
                 2333333333 PP

  == domain 3  score: 5.9 bits;  conditional E-value: 0.0056
      CC2-LZ   5 akeaekvk.keeieeLkaqlqaaeealaakqeeidelkeeikkkeeeletisv.lkaQa 61 
                 a+e  + +  + + eL  +  +a  a+++ ++ +d   +ei k++++l tis  l+aQ+
  KOO24029.1 172 AQEHLMSDlLRSVGELRDRSVQARHAVREDNNTLDMTSKEIDKNQSQLGTISArLRAQI 230
                 445555556889999999999****************************9985599996 PP

>> TMCO5  TMCO5 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.0   0.0     0.022        65      76     139 ..       4      69 ..       2      73 .. 0.88
   2 ?    2.9   0.6     0.023        70      17     110 ..      99     206 ..      93     213 .. 0.53
   3 ?    5.7   1.0    0.0031       9.2     177     230 ..     200     253 ..     171     261 .. 0.80

  Alignments for each domain:
  == domain 1  score: 3.0 bits;  conditional E-value: 0.022
       TMCO5  76 lekkn.eiLlkevveLqkkisrkeskqd.dleketlkqkleelkvklqkseescaeqekelakvee 139
                 l ++n e Ll++   L + ++ + ++q  ++    l+++  elk++ q se+++ae  ++++++ e
  KOO24029.1   4 LTRTNlERLLRSCERLSGDMHGRADRQRfESYLVVLQRQWRELKAQSQCSEDALAEFRRKIQRLAE 69 
                 77899999************99998776666678999*****************999999998865 PP

  == domain 2  score: 2.9 bits;  conditional E-value: 0.023
       TMCO5  17 eaNqslLrkiqekeetiqslereitkldsllereedeeenfsenekedalke......Lele....taklekkn.....eiLlkevveLqkkisrkesk 100
                 +aN +l ++++eke   q l++++       ++   e    + +    a         +e e    t++ e+         Ll++v eL+ +  ++  +
  KOO24029.1  99 QANAELVNRLREKERMQQALRSQLSLEVGPSDAPVSEASARAVQTGRAAATGaratggMEAEalraTLQTERAAqehlmSDLLRSVGELRDRSVQAR-H 196
                 6899999999999999999999887744444444444333332222222222233444555555554444444442233445556666665554444.4 PP

       TMCO5 101 qddleketlk 110
                  ++ +++tl+
  KOO24029.1 197 AVREDNNTLD 206
                 5555555555 PP

  == domain 3  score: 5.7 bits;  conditional E-value: 0.0031
       TMCO5 177 evsklqsnssqrvetiqknaektiikkkkrvfwkralrflffmvlifirLlgyv 230
                 e ++ ++++s++++ +q++  +++ + +++++  r   +l+f +l+f+ +  ++
  KOO24029.1 200 EDNNTLDMTSKEIDKNQSQLGTISARLRAQIMAARSSSCLVFFMLLFVAVVFFL 253
                 556667788888888888888888999999999999999999999998876655 PP

>> QLQ  QLQ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.6   1.3    0.0091        27       6      15 ..      42      51 ..      40      52 .. 0.88
   2 ?    4.0   0.2     0.014        41       8      16 ..     224     232 ..     223     232 .. 0.87

  Alignments for each domain:
  == domain 1  score: 4.6 bits;  conditional E-value: 0.0091
         QLQ  6 QlqeLkaQil 15
                Q+ eLkaQ +
  KOO24029.1 42 QWRELKAQSQ 51
                ********86 PP

  == domain 2  score: 4.0 bits;  conditional E-value: 0.014
         QLQ   8 qeLkaQilA 16 
                 + L+aQi+A
  KOO24029.1 224 ARLRAQIMA 232
                 57******9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (266 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1872  (0.104412); expected 358.6 (0.02)
Passed bias filter:                      917  (0.0511462); expected 358.6 (0.02)
Passed Vit filter:                        88  (0.00490825); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.54u 0.29s 00:00:00.83 Elapsed: 00:00:00.94
# Mc/sec: 857.74
//
Query:       KOO24030.1  [L=234]
Description: peptidyl-prolyl cis-trans isomerase cyp20- chloroplastic-like protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.9e-12   47.1   0.0    4.7e-12   46.5   0.0    1.3  1  Pro_isomerase  Cyclophilin type peptidyl-prolyl cis-trans iso


Domain annotation for each model (and alignments):
>> Pro_isomerase  Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.5   0.0   2.6e-16   4.7e-12      12     143 ..      41     191 ..      29     202 .. 0.75

  Alignments for each domain:
  == domain 1  score: 46.5 bits;  conditional E-value: 2.6e-16
  Pro_isomerase  12 ivieLfadkaPktvenFlklvkeg........fYdgttFhRvikgfmvqgGdptgktsageqe.kkggesi........raipdEitsklkh.krG 89 
                    + i Lf+d+aP  v+ F+ ++ +g        +Y+gtt+ Rv+++ ++q+G  +g++++ e++ +++g            a+++  t++l+h ++G
     KOO24030.1  41 LPIALFGDEAPGSVATFRGVC-DGtlpgqagvTYRGTTISRVERDRVIQAGVASGSGQDVERSiDSTGY-VrsvyvsraDAFKNSDTNELRHdRPG 134
                    6699*****************.677999999*********************99988855544333333.2345666667888888889999888* PP

  Pro_isomerase  90 alamartgkepnsagsqFfItlkeap..hldgkytvFGkVv........eGmdvvekiekvetd 143
                     ++m + g        +F +t+++a+   ld++++v G+V+         ++ ++++i++v++ 
     KOO24030.1 135 RVSMQKGG-------GDFRLTIAPAEnrALDETNIVIGQVLmldtaeesPSTSLLREINEVPVR 191
                    ****9964.......5666666654444************866555444455666666666555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (234 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       255  (0.0142228); expected 358.6 (0.02)
Passed bias filter:                      225  (0.0125495); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.24s 00:00:00.64 Elapsed: 00:00:00.40
# Mc/sec: 1741.51
//
Query:       KOO24031.1  [L=537]
Description: hypothetical protein Ctob_001594 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
        4.3    6.3  10.9       0.18   10.8   0.8    2.6  3  DUF4071   Domain of unknown function (DUF4071)


Domain annotation for each model (and alignments):
>> DUF4071  Domain of unknown function (DUF4071)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.4   1.0    0.0073   1.3e+02      52     130 ..     141     220 ..      95     241 .. 0.64
   2 ?   -2.5   0.1      0.11     2e+03      72     116 ..     261     305 ..     226     316 .. 0.44
   3 ?   10.8   0.8   9.9e-06      0.18      59     143 ..     388     473 ..     344     478 .. 0.78

  Alignments for each domain:
  == domain 1  score: 1.4 bits;  conditional E-value: 0.0073
     DUF4071  52 cveaellkelsellqe.eleklltslverlkkllkeveieskahlkekllndlrkareklkgeelakeLaslrkrlddpe 130
                  +  el+++++  + e     +l+ ++ +l++  ke++ ++ ++  + l++++   r +++  +l+++La lr+ l + +
  KOO24031.1 141 QLRGELATKTDARAREdADGGKLARVAAELESEWKEAAHKAAQAETDALVYEMMAERLETRRPHLNQKLAYLRSALIELT 220
                 44444434433344443466677788888888888888888888889999999999999999999999999998876543 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 0.11
     DUF4071  72 lltslverlkkllkeveieskahlkek.......................llndlrkareklkgeela 116
                  ++                       k                        ++ lr  r++ +ge+ +
  KOO24031.1 261 RRK-----------------------KvmhdlqaaagesgasnsslgggvSRERLRFLRDQAAGEQKR 305
                 222.......................122222222222222223333333566677777777775543 PP

  == domain 3  score: 10.8 bits;  conditional E-value: 9.9e-06
     DUF4071  59 kelse.llqeeleklltslverlkkllkeveieskahlkekllndlrkareklkgeelakeLaslrkrlddpellsadivlnllls 143
                 ++++  +++ + ++ + + ++rl+ + +e++ +   + + ++++dl+   ++ + +e +  L+++r+r + +ell ++ + +l  s
  KOO24031.1 388 ARATMeEVEAQKHARKDESTRRLNAVYDEAALARDSNYEARVAYDLKVEETSKQLSEAEVGLQRVRRRCERVELLAKNAIASLTHS 473
                 222221333356778888899****************************999999***********************99888665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (537 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1854  (0.103408); expected 358.6 (0.02)
Passed bias filter:                      531  (0.0296168); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.64u 0.23s 00:00:00.87 Elapsed: 00:00:00.42
# Mc/sec: 3830.31
//
Query:       KOO24032.1  [L=196]
Description: hypothetical protein Ctob_001592 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (196 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       295  (0.0164538); expected 358.6 (0.02)
Passed bias filter:                      275  (0.0153383); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.40u 0.26s 00:00:00.66 Elapsed: 00:00:00.40
# Mc/sec: 1463.44
//
Query:       KOO24033.1  [L=1649]
Description: DNA repair protein rad8 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    6.4e-19   67.9   0.0    2.7e-16   59.3   0.0    2.4  2  SNF2_N           SNF2 family N-terminal domain
  ------ inclusion threshold ------
      0.042   13.8   0.0       0.24   11.4   0.0    2.1  2  ResIII           Type III restriction enzyme, res subunit
      0.046   13.1   0.0        1.4    8.1   0.0    2.5  2  DNA_methylase    C-5 cytosine-specific DNA methylase
      0.048   13.3   0.5       0.18   11.5   0.5    2.0  1  Telomere_Sde2_2  Telomere stability C-terminal


Domain annotation for each model (and alignments):
>> SNF2_N  SNF2 family N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.3   0.0   5.9e-20   2.7e-16      48     156 ..    1022    1123 ..     985    1154 .. 0.81
   2 !    6.0   0.0   0.00093       4.1     172     188 ..    1276    1292 ..    1254    1310 .. 0.84

  Alignments for each domain:
  == domain 1  score: 59.3 bits;  conditional E-value: 5.9e-20
                  .HHHHHTT--EEE---TTS--HHHHHHHHH...HHTTTS---.......S-EEEE--HHHHHHHHHHHHHH-TTS-EEE--SSHHHH---------- CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
      SNF2_N   48 saeakqsvrGGiLaDemGLGKTvqvlalilaqrakeekdkekkrkdtlagptLivvPaslldqWeneierhvsssalrvlvyggqkkmkkkntkvap 144 
                  +a  k + rGG+LaD  G+GKTv+v+ali+   + ++ ++ + ++++ + +tLivv   +++qWe ei r++ ++ lr++  ++      + + +  
  KOO24033.1 1022 KAGIKGPLRGGLLADALGAGKTVTVIALIA--ADVQAARALPLDERQQSRATLIVVTPLIIRQWEAEIGRFTDQK-LRCVRIESA----AHLRALTY 1111
                  45556789**********************..455667777789***************************9887.999998886....4668999* PP

                  -------EEEE- CS
                  xxxxxxxxxxxx RF
      SNF2_N  145 klladydvvitt 156 
                  k+l+++dvv++ 
  KOO24033.1 1112 KQLREADVVLIV 1123
                  *********985 PP

  == domain 2  score: 6.0 bits;  conditional E-value: 0.00093
                  TS-S-S-SEEEES-GGG CS
                  xxxxxxxxxxxxxxxxx RF
      SNF2_N  172 vlkqvewkrvvlDEght 188 
                  +++  +w+rv++DE+h 
  KOO24033.1 1276 PIEYFRWRRVIVDECHE 1292
                  678899**********6 PP

>> ResIII  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   5.4e-05      0.24      25      82 ..    1030    1095 ..     990    1158 .. 0.84
   2 ?   -1.0   0.0      0.33   1.5e+03     135     143 ..    1284    1292 ..    1244    1303 .. 0.82

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 5.4e-05
                  SEEEEEESTTSTHHHHHHHHHHHH-S.............-EEEEESSHHHHHHHHHHGGGGTGG.. CS
      ResIII   25 krglikmaTGtGKTlvaaklierllkkgkee........kflflvprkslleqtleefkkflseay 82  
                  + gl++ a G+GKT++ ++li++  ++++          ++ ++v +  ++ q++ e+ +f++++ 
  KOO24033.1 1030 RGGLLADALGAGKTVTVIALIAADVQAARALplderqqsRATLIVVTPLIIRQWEAEIGRFTDQKL 1095
                  4688999**********98888877765544788899999999999999******99999988764 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 0.33
                  EEEEETGGG CS
      ResIII  135 viiiDEaHr 143 
                   +i+DE+H 
  KOO24033.1 1284 RVIVDECHE 1292
                  79******6 PP

>> DNA_methylase  C-5 cytosine-specific DNA methylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.9   0.0     0.026   1.1e+02      61     112 ..     105     162 ..      92     165 .. 0.76
   2 ?    8.1   0.0   0.00032       1.4     135     214 ..     293     390 ..     288     539 .. 0.77

  Alignments for each domain:
  == domain 1  score: 1.9 bits;  conditional E-value: 0.026
                    .-SEEEE---GGGTECTSE....E--TTS..GGGHHHHHHHHHHHHH--SEEEEEEEG CS
  DNA_methylase  61 diDlLvgGfPCqpfSvaGk....qkgfed..trgtLffeiiriikekkPkvfllENVk 112
                       +L++G  C +fS        + ++ed  t+g+ f   i ++ +   ++ llENV 
     KOO24033.1 105 HLSVLIAGTSCKDFSARKRaggiKLDIEDmgTSGETFLATIDYLFASAHDICLLENVT 162
                    4679***********8655222255555433677999999999999999999999996 PP

  == domain 2  score: 8.1 bits;  conditional E-value: 0.00032
                    EEEEEEEEEGGGTT-SB--EEEEEEEEEGGG---....................-------SS---GGG.....TSGGGTTS-EEBTTTB--GGGS CS
  DNA_methylase 135 YevsykllnasdyGvpQnReRvfivgirkdleln....................vlvkvkefrfpkkkdleasktlrdlleekseldeektalsdk 210
                    Ye ++  +++++yG p+ R+R ++++ ++++  +                    +  +v++f +p+ +  + + ++rd+l +++     ++++ ++
     KOO24033.1 293 YEATFMQVDSKKYGLPHTRQRKYLLAWKEGTYGElapkevaaywqemviglqtsLDHPVEAFLLPDTS--DRIRRFRDVLRSPIAQRLAEEQHGRD 386
                    777777899*******************9986667887777777777777776666666666666665..47888888888877744444444444 PP

                    SSTT CS
  DNA_methylase 211 lvek 214
                    ++ +
     KOO24033.1 387 FYTT 390
                    4443 PP

>> Telomere_Sde2_2  Telomere stability C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.5     4e-05      0.18      21      42 ..     251     274 ..     231     283 .. 0.89

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 4e-05
  Telomere_Sde2_2  21 KeaLqalGLKcGGtlqeRA..aRL 42 
                      K+aL+ lGLK GGt++ RA  +RL
       KOO24033.1 251 KAALATLGLKRGGTIELRAlcQRL 274
                      89**************99844555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1649 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       497  (0.0277205); expected 358.6 (0.02)
Passed bias filter:                      423  (0.0235931); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.93u 0.26s 00:00:01.19 Elapsed: 00:00:00.44
# Mc/sec: 11171.87
//
Query:       KOO24034.1  [L=3106]
Description: conserved unknown protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.2e-60  203.8   0.3    4.2e-60  202.9   0.3    1.4  1  DUF3638          Protein of unknown function (DUF3638)
    3.8e-13   48.6   0.1    8.7e-13   47.4   0.1    1.7  1  DUF3645          Protein of unknown function (DUF3645)
      0.002   17.8   0.0     0.0049   16.6   0.0    1.6  1  ubiquitin        Ubiquitin family
  ------ inclusion threshold ------
       0.83    9.2   4.6        2.8    7.4   0.3    2.4  2  Glyco_hydro_32N  Glycosyl hydrolases family 32 N-terminal dom


Domain annotation for each model (and alignments):
>> DUF3638  Protein of unknown function (DUF3638)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  202.9   0.3   9.3e-64   4.2e-60       2     220 ..    2085    2298 ..    2084    2303 .. 0.96

  Alignments for each domain:
  == domain 1  score: 202.9 bits;  conditional E-value: 9.3e-64
     DUF3638    2 enwdplehpewLlleiesniliReeQaevAkemispssgensvlQLnmGeGKssvIvPivaaaladgkkLvrvivlkpllkqmaqlLvskL.gglln 97  
                  ++w+ ++hp+wL++e+e++++iR+ Q  vAk  i+   + +++ QLnmGeGK++vI+P+++++la+ ++Lvr+++l +l+ +++ +L+++L ++++ 
  KOO24034.1 2085 REWSVTQHPQWLVFEVEQQLQIRRMQYCVAKYCID---TPGAITQLNMGEGKTRVILPMLVLHLAQPNRLVRLHFLSQLIGEAYFYLHRHLtASIMC 2178
                  68********************************7...799**************************************************99**** PP

     DUF3638   98 rrvyhlpfsRslklteekaeairklleeclkeggvllvqpehilSfkLmglekllskkeekvakelletqkwlde.ssrdilDEsDellsvkfeLiY 193 
                  rr+ hlpf+R +klt ++++ +r++l +c++ +g + + peh lS++L++ e  ls   + v+++l+++   ld+    d+lDEsDe+l++k++LiY
  KOO24034.1 2179 RRLLHLPFHRGVKLTVQDVQVVRDCLVRCMRAHGAIFISPEHRLSLQLKWHELRLS---Q-VNADLVQALPSLDDlPYCDLLDESDEILHHKYQLIY 2271
                  ******************************************************99...4.888999999888552799****************** PP

     DUF3638  194 tvGsqepvegspdRwkvvqevLslvke 220 
                  ++G++ ++   + Rw++vq++L+l++ 
  KOO24034.1 2272 ACGANVQLPDGNVRWTAVQTMLHLLQA 2298
                  ***********************9986 PP

>> DUF3645  Protein of unknown function (DUF3645)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.4   0.1   1.9e-16   8.7e-13       1      33 []    2435    2470 ..    2435    2470 .. 0.96

  Alignments for each domain:
  == domain 1  score: 47.4 bits;  conditional E-value: 1.9e-16
     DUF3645    1 dpsR...tllAVPYrAKDvPserSEFsHpDvvIvLT 33  
                  dp+R   +++AVPYrA D+Ps r+E+++pD++I+LT
  KOO24034.1 2435 DPRRginRRVAVPYRASDTPSDRAEYAQPDTLIILT 2470
                  68889999***************************9 PP

>> ubiquitin  Ubiquitin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   0.0   1.1e-06    0.0049      17      67 ..      20      72 ..      11      76 .. 0.87

  Alignments for each domain:
  == domain 1  score: 16.6 bits;  conditional E-value: 1.1e-06
                TTSBHHHHHHHHHHHH..TSSGGGEEEEETTEEE-TTSBHGGHTTSTTEEEEE CS
   ubiquitin 17 esdtveelKekiaeke..gipaeqqrLiysGkvLedertleeygiqdgstlhl 67
                 +++v++lKe++ e+   g +++ + Liy G vL d++ l+e+ + d+ tl l
  KOO24034.1 20 IDTSVRQLKEQLPETLtlGTAPNVFHLIYGGTVLCDDSRLGELALVDQPTLWL 72
                5899********8887578************************9999888765 PP

>> Glyco_hydro_32N  Glycosyl hydrolases family 32 N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.7   0.5     0.017        77      26      53 ..     484     511 ..     482     520 .. 0.93
   2 ?    7.4   0.3   0.00062       2.8      26      60 ..     571     605 ..     569     612 .. 0.90

  Alignments for each domain:
  == domain 1  score: 2.7 bits;  conditional E-value: 0.017
                      EEEETTSSSS-SBEEEEEEESSSSSBEE CS
  Glyco_hydro_32N  26 YqynpkgavwgnisWghavSkDlvhWee 53 
                      Y   p+ +++g+ +W+ha+ + ++ W+ 
       KOO24034.1 484 YLLAPQRTAHGKPVWKHATEDRWIAWAS 511
                      8899**********************75 PP

  == domain 2  score: 7.4 bits;  conditional E-value: 0.00062
                      EEEETTSSSS-SBEEEEEEESSSSSBEEEEEEE-S CS
  Glyco_hydro_32N  26 YqynpkgavwgnisWghavSkDlvhWeelpvalap 60 
                      Y   p+ +++g+ +W+ha+ + ++ W+ ++  l++
       KOO24034.1 571 YLLAPQRTAHGKPVWKHATADRWIAWTSTGNWLVQ 605
                      8899***********************99987765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (3106 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       592  (0.0330191); expected 358.6 (0.02)
Passed bias filter:                      443  (0.0247086); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 1.26u 0.32s 00:00:01.58 Elapsed: 00:00:00.47
# Mc/sec: 19687.99
//
Query:       KOO24035.1  [L=318]
Description: conserved oligomeric golgi complex subunit 4-like protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.07   12.2   0.0       0.11   11.5   0.0    1.3  1  COG4      COG4 transport protein


Domain annotation for each model (and alignments):
>> COG4  COG4 transport protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   6.2e-06      0.11     281     311 ..       6      36 ..       1      60 [. 0.80

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 6.2e-06
        COG4 281 ssplissvvDDvfyilkkvlrralstgsvdv 311
                  ++l+ svvDD f++l k+  ra+ +g  ++
  KOO24035.1   6 RESLTLSVVDDGFFVLLKAFGRAVRSGAATL 36 
                 5789**********************98654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (318 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       507  (0.0282782); expected 358.6 (0.02)
Passed bias filter:                      398  (0.0221987); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.25s 00:00:00.70 Elapsed: 00:00:00.41
# Mc/sec: 2304.57
//
Query:       KOO24036.1  [L=238]
Description: hypothetical protein Ctob_003563 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    4.6e-07   30.0   6.8    1.1e-06   28.8   6.8    1.6  1  zf-C2H2_jaz  Zinc-finger double-stranded RNA-binding
    0.00014   22.1   4.9     0.0003   21.1   4.9    1.6  1  zf-met       Zinc-finger of C2H2 type
  ------ inclusion threshold ------
      0.014   16.2   2.1      0.029   15.1   0.1    2.2  2  KIAA1430     KIAA1430 homologue
      0.032   15.1   0.6      0.062   14.2   0.6    1.5  1  zf-C2H2_4    C2H2-type zinc finger


Domain annotation for each model (and alignments):
>> zf-C2H2_jaz  Zinc-finger double-stranded RNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.8   6.8   2.4e-10   1.1e-06       4      27 .]      52      75 ..      51      75 .. 0.99

  Alignments for each domain:
  == domain 1  score: 28.8 bits;  conditional E-value: 2.4e-10
                 BTTTTBBBSSHHHHHCCTTSHHHH CS
  zf-C2H2_jaz  4 CvlCdKyFksenaldnHlkSKkHK 27
                 C +C+K++k+ ++l nH+kS kHK
   KOO24036.1 52 CAACNKWYKNPQQLSNHEKSSKHK 75
                 99*********************9 PP

>> zf-met  Zinc-finger of C2H2 type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.1   4.9   6.7e-08    0.0003       2      25 .]      51      74 ..      50      74 .. 0.98

  Alignments for each domain:
  == domain 1  score: 21.1 bits;  conditional E-value: 6.7e-08
      zf-met  2 yCelCnvtfnsesqlksHlqGKkH 25
                +C +Cn+ +++++ql +H ++ kH
  KOO24036.1 51 HCAACNKWYKNPQQLSNHEKSSKH 74
                7*********************** PP

>> KIAA1430  KIAA1430 homologue
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.1   0.3      0.34   1.5e+03      16      75 ..      61      75 ..      45      96 .. 0.54
   2 ?   15.1   0.1   6.5e-06     0.029      69     101 ..     138     170 ..     120     171 .. 0.86

  Alignments for each domain:
  == domain 1  score: -0.1 bits;  conditional E-value: 0.34
    KIAA1430 16 apkkpshlskkkkklqleeerlkeiereNqiLleklseimrrkgkkksassqsqksktas 75
                +p++ s+++k++k+                                             +
  KOO24036.1 61 NPQQLSNHEKSSKH---------------------------------------------K 75
                23322222222221.............................................1 PP

  == domain 2  score: 15.1 bits;  conditional E-value: 6.5e-06
    KIAA1430  69 qksktaskslnaenrkkelqkIeeENqkllkRl 101
                 ++ +   k+ln+++r+k lq+ e ENq +++ l
  KOO24036.1 138 FEASEDYKKLNKTQRRKALQQWEAENQHIMEAL 170
                 556667789*********************976 PP

>> zf-C2H2_4  C2H2-type zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   0.6   1.4e-05     0.062       3      22 ..      52      71 ..      50      73 .. 0.91

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 1.4e-05
   zf-C2H2_4  3 CpiCgksFsskkaLlrHlkt 22
                C  C+k+++++++L++H k+
  KOO24036.1 52 CAACNKWYKNPQQLSNHEKS 71
                999**************997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (238 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1393  (0.0776954); expected 358.6 (0.02)
Passed bias filter:                      578  (0.0322383); expected 358.6 (0.02)
Passed Vit filter:                        51  (0.00284455); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.44u 0.26s 00:00:00.70 Elapsed: 00:00:00.40
# Mc/sec: 1788.88
//
Query:       KOO24037.1  [L=580]
Description: eukaryotic translation initiation factor 3 subunit b-like protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.1e-49  169.0   6.9    2.5e-48  164.5   1.2    3.2  4  eIF2A     Eukaryotic translation initiation factor eIF2A
  ------ inclusion threshold ------
      0.084   12.6   1.2       0.16   11.7   1.2    1.4  1  WASH-7_C  WASH complex subunit 7, C-terminal


Domain annotation for each model (and alignments):
>> eIF2A  Eukaryotic translation initiation factor eIF2A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    3.2   0.0    0.0077        69     142     161 ..      83     102 ..      65     109 .. 0.80
   2 !    5.5   0.1    0.0015        14     105     162 ..      89     142 ..      75     161 .. 0.73
   3 ?   -0.4   0.0       0.1     9e+02      40      72 ..     203     232 ..     193     250 .. 0.72
   4 !  164.5   1.2   2.8e-52   2.5e-48       1     194 []     262     463 ..     262     463 .. 0.95

  Alignments for each domain:
  == domain 1  score: 3.2 bits;  conditional E-value: 0.0077
                 E-TT--EEEE-TTSSEEEEE CS
       eIF2A 142 eaanatlvewspdgryvlTa 161
                 ++   t+v wsp g+y++T+
  KOO24037.1  83 KNWSDTYVTWSPRGTYLATF 102
                 44556899*********997 PP

  == domain 2  score: 5.5 bits;  conditional E-value: 0.0015
                 EEEE-TTSSEEEEE-TTSSS-EEEEEETTTTEEEEEEE-TT--EEEE-TTSSEEEEEE CS
       eIF2A 105 tiffspkgklvllaGfgnlaGeleiwdvkkkkkiakaeaanatlvewspdgryvlTat 162
                  + +sp+g++  la f  l   + +w   + k   k+++    l+++sp+ +y++T +
  KOO24037.1  89 YVTWSPRGTY--LATFHRL--GIMLWGGPSWKRQIKINHGGVKLIDFSPCETYLVTWS 142
                 5778888887..4678888..5778888888888888888888888888888888854 PP

  == domain 3  score: -0.4 bits;  conditional E-value: 0.1
                 EEEESSSTT--EEECCEESSS.EEEEEE-TTSS CS
       eIF2A  40 elyliklkkkksevvelkkegpihdvaWspksk 72 
                 ++ l  +k+k++++ +++ eg + ++ Wsp+ +
  KOO24037.1 203 TMKL--IKDKQDKRTSVRVEG-VRQFLWSPTDN 232
                 3333..466777777777788.99999999865 PP

  == domain 4  score: 164.5 bits;  conditional E-value: 2.8e-52
                 EEESSECEEEEEE-TTTTEEEEEEE.E--TT-CEEEEEEEEEESSSTT--EEECCEESSS.EEEEEE-TTSS-EEEEES...SSSCEEEEEEC...... CS
       eIF2A   1 ksffkadkvklkWnkkGtsllvlvstevdktnksyygetelyliklkkkksevvelkkegpihdvaWspkskefaviyG...kmpakvslfdl...... 90 
                 k++f++ +++++W  +G+ l+v+v+ ++ k++k   +++el++++ k++++ev e +ke  ++++aW+pk+ ++a+i+G    +  +vs++++      
  KOO24037.1 262 KNLFSVADLRMTWHDQGHFLCVKVD-KHSKSKKTLNSAFELFRLRDKDVPIEVTEFTKETTVIAFAWEPKGIRYAIIHGeagSQRTDVSFYSMgskyng 359
                 89***********************.88***************************************************44334459*****9776554 PP

                 SCEEEEEEEEES--EEEE-TTSSEEEEE-TTSSS-EEEEEETTTTEEEEEEE-TT--EEEE-TTSSEEEEEE-TTT-SSS-EEEEEETTTEEEEEEE-T CS
       eIF2A  91 kvkviskleeqkrNtiffspkgklvllaGfgnlaGeleiwdvkkkkkiakaeaanatlvewspdgryvlTattaprlrvdngfkiwsysGklvykkefd 189
                 ++++i++le++   t+ +sp g +++la+++ +aG+le +d ++ ++i +ae++++++vew+p+gr+v+T++++++++++ngf +ws +G+ + +++ d
  KOO24037.1 360 RISLIKTLESKTCSTLWWSPVGSIIVLANLKGTAGQLEWVDANTQTTIGEAEHFMCSDVEWDPTGRFVATSVSHWKHQMENGFIMWSSHGRELLHTKHD 458
                 5************************************************************************************************** PP

                 TEEEE CS
       eIF2A 190 elyqv 194
                 ++yq+
  KOO24037.1 459 KFYQL 463
                 ***96 PP

>> WASH-7_C  WASH complex subunit 7, C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   1.2   1.7e-05      0.16      81     159 ..     438     514 ..     429     527 .. 0.72

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 1.7e-05
    WASH-7_C  81 tdDGFaiGvaYiLklldq.eeeFdsLhWfesvkkkykkelekvkealaakekkkskkkedekllqtlkLtlkrleayqkE 159
                 +++GF++  ++  +ll+  +++F +LhW  + k+ +++ +ek    ++++ +k s++ e+e+ + + +L + +l   ++ 
  KOO24037.1 438 MENGFIMWSSHGRELLHTkHDKFYQLHWRPRPKTLLTEAQEKE---IRKNLRKYSHRYEEEDAQLKNQLGADKLRERKEK 514
                 6889999999999999751679***********9998887776...3333333334444556666888888888776654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (580 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       769  (0.0428914); expected 358.6 (0.02)
Passed bias filter:                      398  (0.0221987); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.57u 0.24s 00:00:00.81 Elapsed: 00:00:00.40
# Mc/sec: 4310.89
//
Query:       KOO24038.1  [L=146]
Description: hypothetical protein Ctob_003561 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    0.00085   18.8   2.8      0.001   18.6   2.8    1.1  1  DUF4349   Domain of unknown function (DUF4349)
  ------ inclusion threshold ------
      0.026   14.4   9.8      0.032   14.1   9.8    1.1  1  ERM       Ezrin/radixin/moesin family
      0.036   14.4   2.0       0.05   13.9   2.0    1.2  1  DUF641    Plant protein of unknown function (DUF641)
       0.19   11.1   3.2       0.22   10.8   3.2    1.0  1  DUF4407   Domain of unknown function (DUF4407)


Domain annotation for each model (and alignments):
>> DUF4349  Domain of unknown function (DUF4349)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.6   2.8   2.2e-07     0.001      92     148 ..      18      74 ..      15     109 .. 0.92

  Alignments for each domain:
  == domain 1  score: 18.6 bits;  conditional E-value: 2.2e-07
     DUF4349  92 eaRlkaleasedrllallekaksvedlleiereLsevqaeieslegqlryLdnqvay 148
                 ea ++a+ea+ + ++++le+  + + + + e e++++++ei +  ++l++L++  +y
  KOO24038.1  18 EAAKAAKEAEYRAMQEMLERRRNPAKMAAYEAEVERRREEISAKDAELKELQKTGDY 74 
                 67789**********************************************997776 PP

>> ERM  Ezrin/radixin/moesin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   9.8   7.1e-06     0.032      55     127 ..      15      87 ..      14     109 .. 0.86

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 7.1e-06
         ERM  55 kaaeaeeeiqrlkesaekeeeekeklerklreaeleaarleeeserkeeeaerLkeeleeareaeeeakekll 127
                 k++ea ++ ++ + +a++e+ e+++  +k++++e+e++r +ee ++k++e ++L++    +  ++ +++ kl+
  KOO24038.1  15 KESEAAKAAKEAEYRAMQEMLERRRNPAKMAAYEAEVERRREEISAKDAELKELQKTGDYVAWQKMREEGKLQ 87 
                 6789999************************************************976555555555555554 PP

>> DUF641  Plant protein of unknown function (DUF641)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   2.0   1.1e-05      0.05      61     114 ..      15      71 ..      10      85 .. 0.67

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 1.1e-05
      DUF641  61 rkkqkkkase.aeeseleaeiqe..qrsllktyeitvkkleaelkakdseieeLkek 114
                 ++++ +ka++ ae ++++  +++  +  ++++ye+ v++ ++e++akd+e++eL+++
  KOO24038.1  15 KESEAAKAAKeAEYRAMQEMLERrrNPAKMAAYEAEVERRREEISAKDAELKELQKT 71 
                 444444433222223333333332244689************************986 PP

>> DUF4407  Domain of unknown function (DUF4407)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   3.2   4.9e-05      0.22     148     229 ..      16      93 ..      11     112 .. 0.62

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 4.9e-05
     DUF4407 148 eidaaearldalraeaqkeldgtkgtgttgvaGkgpaakekkaqldaaqaelaelkakld..atarlaalraelaeleaerake 229
                 e +aa+a+ +a+++++q+ l+  ++    ++a ++++ +++++++ a++ael+el+++ d  a     ++ +e  +l+a  + e
  KOO24038.1  16 ESEAAKAAKEAEYRAMQEMLERRRNPA--KMAAYEAEVERRREEISAKDAELKELQKTGDyvA----WQKMREEGKLQASDDME 93 
                 445555555555555555555544333..5788999999999999999999999999955551....33333333333333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (146 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1238  (0.0690501); expected 358.6 (0.02)
Passed bias filter:                      611  (0.0340789); expected 358.6 (0.02)
Passed Vit filter:                        65  (0.00362541); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.41u 0.24s 00:00:00.64 Elapsed: 00:00:00.38
# Mc/sec: 1159.43
//
Query:       KOO24039.1  [L=123]
Description: chaperone protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    0.00033   20.7   0.1    0.00058   19.9   0.1    1.4  1  DnaJ      DnaJ domain


Domain annotation for each model (and alignments):
>> DnaJ  DnaJ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.9   0.1   3.2e-08   0.00058      43      63 .]       2      22 ..       1      22 [. 0.96

  Alignments for each domain:
  == domain 1  score: 19.9 bits;  conditional E-value: 3.2e-08
                HHHHHHHHHHHTSHHHHHHHH CS
        DnaJ 43 FkeineAyevLsdpekRkqYD 63
                F++++eAyevLs+p +R+ YD
  KOO24039.1  2 FRRVQEAYEVLSNPLERRYYD 22
                9*******************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (123 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       509  (0.0283898); expected 358.6 (0.02)
Passed bias filter:                      402  (0.0224218); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.24s 00:00:00.64 Elapsed: 00:00:00.40
# Mc/sec: 917.36
//
Query:       KOO24040.1  [L=298]
Description: hypothetical protein Ctob_003559 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.053   13.2   0.0        0.1   12.3   0.0    1.4  1  TadZ_N    Pilus assembly protein TadZ N-terminal


Domain annotation for each model (and alignments):
>> TadZ_N  Pilus assembly protein TadZ N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   5.8e-06       0.1      46     126 ..     102     181 ..      82     186 .. 0.80

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 5.8e-06
                 HT-SEEEEEE-TTTHHHHHHHHH..HHHHH-TT-EEEEEE-TT-HHHHHHHHHHT-SEEEETT-BHHHHHHHHHHHHTT.S-SS CS
      TadZ_N  46 taagvlfislgksnlvsqgalve..glvsarpmlsvvaigdgldnqlvlaamragardfitygaraseltglirrlggr.lpsv 126
                 t   vlf+ +  + +  qga+ +  gl+ arp + vv    g+d+    a   agar +    a   +l  ++    gr lp v
  KOO24040.1 102 TRRQVLFVFVP-AAMWRQGAVDDayGLIGARPDVVVV---TGIDKAAAEAHCVAGARTYFNARALNEQLHSVVAHYAGRhLPPV 181
                 55667777664.56788999854449******98777...59*****************999999999*999999988746765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (298 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       391  (0.0218082); expected 358.6 (0.02)
Passed bias filter:                      367  (0.0204696); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.26s 00:00:00.68 Elapsed: 00:00:00.40
# Mc/sec: 2220.42
//
Query:       KOO24041.1  [L=476]
Description: major facilitator superfamily permease [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      2e-81  274.0  16.8    2.5e-81  273.7  16.8    1.0  1  ATG22     Vacuole effluxer Atg22 like
    1.4e-09   37.4  48.4    1.4e-06   27.5  28.3    2.9  3  MFS_1     Major Facilitator Superfamily


Domain annotation for each model (and alignments):
>> ATG22  Vacuole effluxer Atg22 like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  273.7  16.8   2.8e-85   2.5e-81      59     477 ..      52     454 ..      21     455 .. 0.90

  Alignments for each domain:
  == domain 1  score: 273.7 bits;  conditional E-value: 2.8e-85
       ATG22  59 vvkflgieidtaSfvlytfslsvllqavvvislsglADygnyrknlLlafaligslstilfllvtpkkYllgavlyivsntcfgaslvllnsfLPllvr 157
                  ++ +g+  + +++++++  +sv++qa ++ +l+ lADyg  rk+ Ll  +++g+ ++i+ l+++ +++++g++++++ n+cfg+s v++n+fLP +v+
  KOO24041.1  52 LLTRGGLATNPTAYATLCITVSVVIQAGIFFFLGPLADYGGSRKKTLLGTSWMGASFCIISLAINAENFTIGMLVCVITNVCFGVSGVMMNAFLPKIVA 150
                 34445699999**************************************************************************************** PP

       ATG22 158 edpelqeaeeeeeeeeessetaeeeeskelklstriSslGlaigylgailvqiisilivialgstatfslrlalllvGlwWliftipaalllkkrpgpp 256
                 + pe+            ++ + +e+e+ e+++st+iS++G+a+gy+++++  i++i +v  l +    +++l++++vG+wW+++ ip+al l +rpg+p
  KOO24041.1 151 ALPEV------------RAAQGKEREEIESMRSTEISARGFAWGYVAGVIGIILCIPLVALLPEI--LAYQLCMVIVGIWWAAWMIPVALRLLPRPGSP 235
                 ****9............334457788899*********************************996..******************************** PP

       ATG22 257 lpkglsyliygwkslgrtlkqarklkdvllfLvawfllsdgiatvsstavlfaktelkmstak.....lillsivaviaavlGaflwplvsrrlnlktk 350
                 lp+ +++++ + +s++ t++++  l+   ++L+ w ++sdg+  v s+  l+a++++ ++        l++ ++v   +a    +l   +++ ++++++
  KOO24041.1 236 LPENKTVCTVASSSFLATFRELCALPRSGFYLLLWAFFSDGVFLVGSIGGLYANSRVDWGCFPktygvLAVFILVPL-FAAGFNVLYQKIAQWFRVPPE 333
                 **********************************************************9976656443333333333.444344666689999****** PP

       ATG22 351 ktllaiivlf.eliplyGllGiilgkiGlkqpwEfyvlavvyglvlgglssysRslfseLiPrGkEaaFFsLyaitdkgssvigplivglItDrtgnir 448
                 ++l + +v++  ++p++G+        G+ +  ++ ++av+ g  +g++++ sRs+f++LiP+GkE+aFF+Ly++t++gss++gpli+++ + +t+++ 
  KOO24041.1 334 RMLQWTLVVIgLVVPIWGFA-------GIATGLDVIIVAVIWGAHMGPMQAFSRSVFASLIPPGKESAFFALYELTNRGSSWLGPLILTVSVAATNQYT 425
                 ***998777625689****8.......677779****************************************************************** PP

       ATG22 449 safvflavLlvvplpllllvdvergrrea 477
                 +afv ++v+++ +  +l ++d+++g + a
  KOO24041.1 426 YAFVYVLVVCLGGAFFLSFIDMKKGHKAA 454
                 *************************9876 PP

>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.6   6.9   1.6e-07    0.0014     244     329 ..      64     149 ..      47     160 .. 0.77
   2 !   27.5  28.3   1.6e-10   1.4e-06     119     353 .]     175     411 ..     166     411 .. 0.86
   3 !   10.6   1.0   2.2e-05       0.2     108     187 ..     381     459 ..     379     475 .. 0.80

  Alignments for each domain:
  == domain 1  score: 17.6 bits;  conditional E-value: 1.6e-07
       MFS_1 244 llaglllallalvgailallagrlsdrlgrrrrlllallllllaalglallavtssavllllvlvliGfglgfvfpsllalasdla 329
                  +a+l + ++ ++ a++++++g l+d  g+r+ +ll+ + + ++++++ l+ ++++ ++++lv+v+  +++g+  ++++a++ + +
  KOO24041.1  64 AYATLCITVSVVIQAGIFFFLGPLADYGGSRKKTLLGTSWMGASFCIISLAINAENFTIGMLVCVITNVCFGVSGVMMNAFLPKIV 149
                 34444455555555555779999999999999999999999999999999999999999999999999999999999999888776 PP

  == domain 2  score: 27.5 bits;  conditional E-value: 1.6e-10
       MFS_1 119 rgraigllsagfslGailgpllggllasslgWravfyilaivsllafv.lfllllpeepperkrkspkeeekgtgpaplvpawkallkdpvlw..illi 214
                  +r++++ +++  +G+il  +l +ll + l ++++++i++i  + +++ ++l llp++ ++ + ++++     ++ ++++  +++l++ p     +ll+
  KOO24041.1 175 SARGFAWGYVAGVIGIILCIPLVALLPEILAYQLCMVIVGIWWAAWMIpVALRLLPRPGSPLPENKTVCT---VASSSFLATFRELCALPRSGfyLLLW 270
                 6789999999************************************999888888888888888888888...46666666899999999553234666 PP

       MFS_1 215 alllfffgfsglltllplylqevlgls......glllaglllallalvgailallagrlsdr..lgrrrrlllallllllaalglallavtssavllll 305
                 a+++   g++++ +   ly++++ +++      g +la+  + l+ l++a++ +l  ++++   ++++r+l ++l+++ l++ ++ +++ + + + +++
  KOO24041.1 271 AFFSD--GVFLVGSIGGLYANSRVDWGcfpktyG-VLAV--FILVPLFAAGFNVLYQKIAQWfrVPPERMLQWTLVVIGLVVPIWGFAGIA-TGLDVII 363
                 66666..99999******************8777.4444..777777777779999999987668999******************99999.99***** PP

       MFS_1 306 vlvliGfglgfvfpsllalasdlappeeagtasglfntagslggalgp 353
                 v v++G  +g +++ + ++ ++l+pp +  + ++l+ +++  ++ lgp
  KOO24041.1 364 VAVIWGAHMGPMQAFSRSVFASLIPPGKESAFFALYELTNRGSSWLGP 411
                 *************************************88887777776 PP

  == domain 3  score: 10.6 bits;  conditional E-value: 2.2e-05
       MFS_1 108 aliadwfpkeergraigllsagfslGailgpllggllasslg.Wravfyilaivsllafvlfllllpeepperkrkspkee 187
                 +++a + p+ + +  ++l+ +++  ++ lgpl+  + +++ + ++++f+ + +v+l ++ +  l + + ++ +k   ++ +
  KOO24041.1 381 SVFASLIPPGKESAFFALYELTNRGSSWLGPLILTVSVAATNqYTYAFVYVLVVCLGGAFF--LSFIDMKKGHKAAIERGR 459
                 6899999**************************9999955555***************665..888888887777766555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (476 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       730  (0.0407162); expected 358.6 (0.02)
Passed bias filter:                      323  (0.0180155); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.56u 0.28s 00:00:00.84 Elapsed: 00:00:00.42
# Mc/sec: 3396.02
//
Query:       KOO24042.1  [L=146]
Description: unc119 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.8e-51  173.3   0.0    4.3e-51  173.1   0.0    1.0  1  GMP_PDE_delta  GMP-PDE, delta subunit


Domain annotation for each model (and alignments):
>> GMP_PDE_delta  GMP-PDE, delta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  173.1   0.0   2.4e-55   4.3e-51      25     157 .]      10     143 ..       4     143 .. 0.93

  Alignments for each domain:
  == domain 1  score: 173.1 bits;  conditional E-value: 2.4e-55
  GMP_PDE_delta  25 eiakesssee.eeeeeeeeeenagrevryqftpkflklktvgatveFsvgekpvknfrlierhyfkdkllksfdFefgFciPnskNtwehiyeape 119
                    ++ak+++ ++ +++    e e+++r + y f  +fl+l+t+g+t++Fs+g+++v  fr+ierhyf+d+l+ksfdFefgF iPns+Ntwe+iye+pe
     KOO24042.1  10 QVAKDPKMPKiDNSMIPPEMEDQVRCICYDFGDAFLDLTTIGTTLTFSIGDNEVPGFRMIERHYFRDQLIKSFDFEFGFGIPNSTNTWEAIYEMPE 105
                    566666655536677788999*************************************************************************** PP

  GMP_PDE_delta 120 lseelveemiaspfetksdsfyfvdnklvmhnkaeyaY 157
                    l++e+ ++mi++p+et+sdsfy v++++v hnka+yaY
     KOO24042.1 106 LDAETKQAMIDNPWETQSDSFYYVGDQMVLHNKAKYAY 143
                    *************************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (146 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       315  (0.0175693); expected 358.6 (0.02)
Passed bias filter:                      259  (0.0144459); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.25s 00:00:00.63 Elapsed: 00:00:00.41
# Mc/sec: 1068.92
//
Query:       KOO24043.1  [L=418]
Description: translation initiation factor eif-2b subunit beta [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.3e-65  221.4   0.0    2.5e-65  220.5   0.0    1.4  1  IF-2B     Initiation factor 2 subunit family


Domain annotation for each model (and alignments):
>> IF-2B  Initiation factor 2 subunit family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  220.5   0.0   1.4e-69   2.5e-65      10     278 ..      80     391 ..      71     395 .. 0.92

  Alignments for each domain:
  == domain 1  score: 220.5 bits;  conditional E-value: 1.4e-69
                 HHHHHHHHHHHHHCCCSTHHHHHHHHHHHHHHHHTSSTS-HHHHHHHHHHHHHHHCCTTTSSHHHHHHH.............................. CS
       IF-2B  10 iaalevllevikdaktskvaeLkeelrkaidlLkkarPtavslgnairrllkeiselksssdvkeakks.............................. 78 
                 ++ +++l     +a++++v+ L++ +++a++++  a+P +  +gn++rr+l+ i +++ +   ++  k+                              
  KOO24043.1  80 LEIMRLLVATSAAAQATDVNSLIKLIKRAGAVMVTAQPHELVIGNMVRRVLA-IVRDETRDGGNKPFKAgdaaaasggdaasggeqtvhvagpslmsll 177
                 3444555555667789999999******************************.44443333333333334667************************** PP

                 ...................HHHHHHHHHHHHHHHHHHHHHHHHTTC-TTEEEEEES--SHHHHHHHHHHHTTEEEEEEEEEXTTTTHHHTHHHHHHHTT CS
       IF-2B  79 ...................liekikelikeieeadekigdiaaelikdgdtilTicnsktvlevlraaakekkkfkVivvEsrPrlqGrltakeLvqag 158
                                    +ie i e+++e  +    i+++a+++i+ ++++lT+++  tv ++l+aaak k++f Viv+E+ P  +G+++a+ L++ag
  KOO24043.1 178 dapealdysrqslkalkgpIIEGIAEVMEELSTVSAHIAEQAIQHIHANEVVLTHGRDPTVEAFLKAAAK-KRNFDVIVAETAPGGEGQQMAVALAEAG 275
                 ******************************************************************9888.89************************** PP

                 XEEEEEEGGGHHHHHHCTESEEEEEXSEEETTSEEEEETTHHHHHHHHHHTTXEEEEEXXGGGBESTSSSGGGSSXXBEXTHHHHEETTEESSTTTEEE CS
       IF-2B 159 ipvtlitdsavayvmseevdkvivGAdrilenGaiankiGTsslAvlAkefnipvlvvaeslkfservqldedifieerdpeellnitgeriaeeelkv 257
                 i +tli d+av++vm + v+kvivGA+++++nG++++ +G++ lA++A++f++pv ++a+++k+++ ++ + d+f+++  p+ +l++++       ++v
  KOO24043.1 276 ISTTLIADAAVFAVMAR-VNKVIVGAHGVMANGGLIAAAGSHLLALAAQHFSVPVVACAGLYKLTPLFPSGPDSFNMLLSPQPMLRYDEGLQ---GVHV 370
                 *****************.***********************************************************************987...**** PP

                 EEBSEEEEEGGGXSEEEETTE CS
       IF-2B 258 vnpafDvtPpelItliITevG 278
                  npafD++Ppel+ l+IT+ G
  KOO24043.1 371 PNPAFDYVPPELVALLITNSG 391
                 *******************99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (418 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       818  (0.0456244); expected 358.6 (0.02)
Passed bias filter:                      575  (0.0320709); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.51u 0.25s 00:00:00.76 Elapsed: 00:00:00.40
# Mc/sec: 3131.02
//
Query:       KOO24044.1  [L=427]
Description: d chain transport protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    6.3e-33  113.2   5.0    5.2e-12   46.2   1.4    3.4  4  Ank_2          Ankyrin repeats (3 copies)
    8.6e-19   67.7   5.1    9.4e-07   29.3   0.5    4.4  4  Ank_4          Ankyrin repeats (many copies)
    1.1e-18   65.4   1.2     0.0026   18.1   0.0    5.8  5  Ank_3          Ankyrin repeat
    3.7e-17   62.2   5.5    1.3e-08   34.9   0.0    4.6  5  Ank_5          Ankyrin repeats (many copies)
    2.4e-13   49.9  12.6    0.00046   20.5   0.0    5.3  5  Ank            Ankyrin repeat
  ------ inclusion threshold ------
       0.15   11.5  25.3      0.023   14.2   6.4    2.2  2  CAP_N          Adenylate cyclase associated (CAP) N terminal
       0.26   11.3   9.4        3.8    7.5   3.1    2.3  2  Mito_fiss_reg  Mitochondrial fission regulator
        5.9    7.0  18.3       0.96    9.5   6.4    2.4  2  PRIMA1         Proline-rich membrane anchor 1


Domain annotation for each model (and alignments):
>> Ank_2  Ankyrin repeats (3 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.4   0.1   6.3e-13   1.4e-09      25      81 ..     182     245 ..     168     247 .. 0.85
   2 !   46.2   1.4   2.3e-15   5.2e-12       1      74 [.     187     271 ..     187     278 .. 0.85
   3 !   12.9   0.0   5.6e-05      0.12      25      47 ..     249     271 ..     240     291 .. 0.73
   4 !   36.9   0.0   1.9e-12   4.2e-09      23      80 ..     320     386 ..     311     389 .. 0.84

  Alignments for each domain:
  == domain 1  score: 38.4 bits;  conditional E-value: 6.3e-13
       Ank_2  25 ngktaLhyAakngnleivklLleh.......adndgrtpLhyAarsghleivklLlekgadinl 81 
                  g+ +L +A+ +g+ e++k+Ll++       a++ grt+Lh A++ ghl +v  Ll+ +ad++l
  KOO24044.1 182 RGLEPLALACARGHAEAAKMLLKArasvdaaAHSCGRTALHRAVEGGHLATVMTLLDGKADPTL 245
                 6999******************9667755444499*********99**********98999986 PP

  == domain 2  score: 46.2 bits;  conditional E-value: 2.3e-15
       Ank_2   1 LhlAakngnlelvklLl.egadpn...k.ngktaLhyAakngnleivklLleh.ad.....ndgrtpLhyAarsghleivklLle 74 
                 L lA+  g+ e+ k Ll + a ++   + +g+taLh A+++g+l +v +Ll+  ad     ++g  +L++Aa  ghleiv lLl 
  KOO24044.1 187 LALACARGHAEAAKMLLkARASVDaaaHsCGRTALHRAVEGGHLATVMTLLDGkADptlgaRNGVCALQAAAARGHLEIVSLLLS 271
                 679*****99*******855555554537**********************966444456789*********99*********94 PP

  == domain 3  score: 12.9 bits;  conditional E-value: 5.6e-05
       Ank_2  25 ngktaLhyAakngnleivklLle 47 
                 ng  aL++Aa +g+leiv+lLl+
  KOO24044.1 249 NGVCALQAAAARGHLEIVSLLLS 271
                 77778888888888888888875 PP

  == domain 4  score: 36.9 bits;  conditional E-value: 1.9e-12
       Ank_2  23 n..k.ngktaLhyAakngnleivklLleh......adndgrtpLhyAarsghleivklLlekgadin 80 
                 +  +  g+t+L++Aak+g+  ++k+Ll+       +d +g+ + h+A+rsgh e++  L   gad+ 
  KOO24044.1 320 DqpDhSGLTPLMVAAKGGYSTVLKALLDGgadpsvTDINGWGAVHHACRSGHREVALSLARAGADVG 386
                 4332589***********99999****966567776799*********************8899986 PP

>> Ank_4  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.3   0.5   4.2e-10   9.4e-07       2      51 ..     184     233 ..     183     237 .. 0.92
   2 !   12.5   0.1   7.6e-05      0.17      12      55 .]     228     270 ..     226     270 .. 0.86
   3 !   12.3   0.0   8.7e-05      0.19      30      55 .]     321     346 ..     314     346 .. 0.89
   4 !   26.6   0.0   2.9e-09   6.5e-06       2      51 ..     327     375 ..     326     378 .. 0.94

  Alignments for each domain:
  == domain 1  score: 29.3 bits;  conditional E-value: 4.2e-10
       Ank_4   2 ltaLhyaaisgrlelvrlLlekgadinaqdnrsGetalhiAakrgnveil 51 
                 l++L  a++ g+ e+++ Ll  +a+++a + ++G+talh+A+ +g++  +
  KOO24044.1 184 LEPLALACARGHAEAAKMLLKARASVDAAAHSCGRTALHRAVEGGHLATV 233
                 688999****************************************8765 PP

  == domain 2  score: 12.5 bits;  conditional E-value: 7.6e-05
       Ank_4  12 grlelvrlLlekgadinaqdnrsGetalhiAakrgnveilklLl 55 
                 g+l +v+ Ll+ +ad+     r+G  al+ Aa rg++ei+ lLl
  KOO24044.1 228 GHLATVMTLLDGKADPTLG-ARNGVCALQAAAARGHLEIVSLLL 270
                 8999999999888994443.459999****************98 PP

  == domain 3  score: 12.3 bits;  conditional E-value: 8.7e-05
       Ank_4  30 qdnrsGetalhiAakrgnveilklLl 55 
                 q++ sG+t+l  Aak+g+  +lk Ll
  KOO24044.1 321 QPDHSGLTPLMVAAKGGYSTVLKALL 346
                 4699********************98 PP

  == domain 4  score: 26.6 bits;  conditional E-value: 2.9e-09
       Ank_4   2 ltaLhyaaisgrlelvrlLlekgadinaqdnrsGetalhiAakrgnveil 51 
                 lt+L  aa+ g   +++ Ll+ gad+  + +++G+ a+h+A++ g+ e++
  KOO24044.1 327 LTPLMVAAKGGYSTVLKALLDGGADPSVT-DINGWGAVHHACRSGHREVA 375
                 899*****************99******9.****************8875 PP

>> Ank_3  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.6   0.0   0.00071       1.6       2      30 ..     183     210 ..     182     211 .. 0.87
   2 !   10.9   0.0   0.00026      0.57       1      29 [.     216     243 ..     216     245 .. 0.87
   3 !    6.9   0.0    0.0053        12       1      23 [.     249     271 ..     249     277 .. 0.88
   4 !   18.1   0.0   1.1e-06    0.0026       2      30 ..     326     353 ..     325     354 .. 0.95
   5 !   13.8   0.0   2.9e-05     0.066       1      29 [.     358     385 ..     358     386 .. 0.93

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 0.00071
       Ank_3   2 GetpLhlAarsgnleivkfLlenkgadvn 30 
                 G  pL lA+  g+ e +k+Ll+   a v+
  KOO24044.1 183 GLEPLALACARGHAEAAKMLLK-ARASVD 210
                 7789*****************9.677665 PP

  == domain 2  score: 10.9 bits;  conditional E-value: 0.00026
       Ank_3   1 nGetpLhlAarsgnleivkfLlenkgadv 29 
                 +G+t+Lh+A++ g+l+ v  Ll+   ad+
  KOO24044.1 216 CGRTALHRAVEGGHLATVMTLLD-GKADP 243
                 69*************88888888.77776 PP

  == domain 3  score: 6.9 bits;  conditional E-value: 0.0053
       Ank_3   1 nGetpLhlAarsgnleivkfLle 23 
                 nG ++L  Aa  g+leiv +Ll 
  KOO24044.1 249 NGVCALQAAAARGHLEIVSLLLS 271
                 68899****************98 PP

  == domain 4  score: 18.1 bits;  conditional E-value: 1.1e-06
       Ank_3   2 GetpLhlAarsgnleivkfLlenkgadvn 30 
                 G tpL++Aa+ g  +++k+Ll+  gad+ 
  KOO24044.1 326 GLTPLMVAAKGGYSTVLKALLD-GGADPS 353
                 89********************.9***96 PP

  == domain 5  score: 13.8 bits;  conditional E-value: 2.9e-05
       Ank_3   1 nGetpLhlAarsgnleivkfLlenkgadv 29 
                 nG+ + h+A+rsg+ e++  L +  gadv
  KOO24044.1 358 NGWGAVHHACRSGHREVALSLAR-AGADV 385
                 79999****************99.89997 PP

>> Ank_5  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.1   7.9e-06     0.018      13      42 ..     180     209 ..     175     213 .. 0.86
   2 !    8.6   0.1    0.0011       2.4      14      44 ..     215     245 ..     212     253 .. 0.83
   3 ?    4.6   0.1     0.018        41       2      36 ..     237     270 ..     236     278 .. 0.84
   4 !   34.9   0.0   5.8e-12   1.3e-08       8      56 .]     318     366 ..     314     366 .. 0.93
   5 ?    0.6   0.0      0.35   7.8e+02      21      41 ..     364     384 ..     362     386 .. 0.84

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 7.9e-06
       Ank_5  13 dgggntpLhvAakygaadvvrlLlargadl 42 
                 d +g +pL +A+ +g+a+ +++Ll+ +a+ 
  KOO24044.1 180 DVRGLEPLALACARGHAEAAKMLLKARASV 209
                 56788*******************888765 PP

  == domain 2  score: 8.6 bits;  conditional E-value: 0.0011
       Ank_5  14 gggntpLhvAakygaadvvrlLlargadlnl 44 
                  +g t+Lh A+++g++  v  Ll+  ad++l
  KOO24044.1 215 SCGRTALHRAVEGGHLATVMTLLDGKADPTL 245
                 5788***********9999999877777765 PP

  == domain 3  score: 4.6 bits;  conditional E-value: 0.018
       Ank_5   2 lehgpadvnrldgggntpLhvAakygaadvvrlLl 36 
                 l+   ad+    ++g+ +L  Aa +g++++v lLl
  KOO24044.1 237 LDGK-ADPTLGARNGVCALQAAAARGHLEIVSLLL 270
                 5544.8999999999999999**********9999 PP

  == domain 4  score: 34.9 bits;  conditional E-value: 5.8e-12
       Ank_5   8 dvnrldgggntpLhvAakygaadvvrlLlargadlnltdsrGltaldlA 56 
                 +v+ +d  g tpL+vAak+g+++v++ Ll+ gad+ +td +G+ a+++A
  KOO24044.1 318 RVDQPDHSGLTPLMVAAKGGYSTVLKALLDGGADPSVTDINGWGAVHHA 366
                 677888899************************************9987 PP

  == domain 5  score: 0.6 bits;  conditional E-value: 0.35
       Ank_5  21 hvAakygaadvvrlLlargad 41 
                 h+A++ g+ +v++ L   gad
  KOO24044.1 364 HHACRSGHREVALSLARAGAD 384
                 99**********999866666 PP

>> Ank  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.9   0.4   0.00096       2.1       5      29 ..     186     211 ..     183     213 .. 0.91
   2 !   16.3   0.1   4.4e-06    0.0098       2      28 ..     217     244 ..     216     248 .. 0.92
   3 !    7.9   0.1     0.002       4.6       1      22 [.     249     270 ..     249     274 .. 0.85
   4 !   20.5   0.0     2e-07   0.00046       2      31 ..     326     356 ..     325     357 .. 0.88
   5 ?    0.6   0.1      0.42   9.4e+02       2      18 ..     359     375 ..     358     388 .. 0.69

  Alignments for each domain:
  == domain 1  score: 8.9 bits;  conditional E-value: 0.00096
                 HHHHHHHHTTHHHHHHHH.TTTSTTC CS
         Ank   5 PLHlAatngkkriiklLL.hGAnlna 29 
                 PL lA+ +g+++ +k+LL  +A+++a
  KOO24044.1 186 PLALACARGHAEAAKMLLkARASVDA 211
                 899***99**********77999987 PP

  == domain 2  score: 16.3 bits;  conditional E-value: 4.4e-06
                 SBBHHHHHHHHTTHHHHHHHHTT.TSTT CS
         Ank   2 GnTPLHlAatngkkriiklLLhG.Anln 28 
                 G+T+LH+A+ +g++  +  LL+G A+++
  KOO24044.1 217 GRTALHRAVEGGHLATVMTLLDGkADPT 244
                 9************999999**999**97 PP

  == domain 3  score: 7.9 bits;  conditional E-value: 0.002
                 TSBBHHHHHHHHTTHHHHHHHH CS
         Ank   1 dGnTPLHlAatngkkriiklLL 22 
                 +G  +L  Aa +g+++i++lLL
  KOO24044.1 249 NGVCALQAAAARGHLEIVSLLL 270
                 567789989989*********9 PP

  == domain 4  score: 20.5 bits;  conditional E-value: 2e-07
                 SBBHHHHHHHHTTHHHHHHHHT.TTSTTCBT CS
         Ank   2 GnTPLHlAatngkkriiklLLh.GAnlnald 31 
                 G TPL++Aa +g   ++k+LL+ GA++  +d
  KOO24044.1 326 GLTPLMVAAKGGYSTVLKALLDgGADPSVTD 356
                 89*******988899******736***9988 PP

  == domain 5  score: 0.6 bits;  conditional E-value: 0.42
                 SBBHHHHHHHHTTHHHH CS
         Ank   2 GnTPLHlAatngkkrii 18 
                 G+ + H A++ g+ +++
  KOO24044.1 359 GWGAVHHACRSGHREVA 375
                 67788****98986665 PP

>> CAP_N  Adenylate cyclase associated (CAP) N terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.0  10.9     0.026        58     230     258 ..     132     162 ..     114     175 .. 0.48
   2 ?   14.2   6.4     1e-05     0.023     232     283 ..     285     345 ..     276     351 .. 0.50

  Alignments for each domain:
  == domain 1  score: 3.0 bits;  conditional E-value: 0.026
                 .......SSC--XXXXXXX....XXXXXXXX CS
       CAP_N 230 ealk..aaaaaasaaaaggpppPpPpPppas 258
                 ea++  a+aaa++aaa+g+  +PpPpPp  s
  KOO24044.1 132 EAAAaaAQAAAEAAAAKGKKGAPPPPPPAES 162
                 2222322223333333333333333333322 PP

  == domain 2  score: 14.2 bits;  conditional E-value: 1e-05
                 .....SSC--XXXXXXX.....XXXXXXXX...........XXXXXXXXXXXXXXXXXXXX CS
       CAP_N 232 lk..aaaaaasaaaaggppp.PpPpPppasvf......eeesaaasasaaaggmsavFaeL 283
                 ++  a+aaaa++ a+g+ppp PpPpPpp++ +      +++  ++   aa+gg s v++ L
  KOO24044.1 285 AAaeASAAAAAKGAKGAPPPePPPPPPPPKKVcrvdqpDHSGLTPLMVAAKGGYSTVLKAL 345
                 3311222333333344455554444444433346665544444566666777777777666 PP

>> Mito_fiss_reg  Mitochondrial fission regulator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.5   0.4    0.0018         4     139     190 ..     110     170 ..      87     214 .. 0.54
   2 ?    7.5   3.1    0.0017       3.8     165     194 ..     285     317 ..     256     331 .. 0.53

  Alignments for each domain:
  == domain 1  score: 7.5 bits;  conditional E-value: 0.0018
  Mito_fiss_reg 139 IVaaqeasnssaslelsdtpdllep..ksssaspsl..epsss.....lp.pppppppppi...p 190
                    I+a +ea++  a+++ +++ ++ e     ++a+++   +   +     +p ppp+ + ppi    
     KOO24044.1 110 IIAQAEAAEA-AKVAADEAARAAEAaaAAAQAAAEAaaA---KgkkgaPPpPPPAESVPPIaveV 170
                    5555555544.2222222222222200222222222111...12233333133334445533331 PP

  == domain 2  score: 7.5 bits;  conditional E-value: 0.0017
  Mito_fiss_reg 165 sssaspslepsss.......lppppppppppippesp 194
                     + +++              +ppp pppppp+p+++ 
     KOO24044.1 285 AAAEASAA----AaakgakgAPPPEPPPPPPPPKKVC 317
                    33322222....0122334455544444444333333 PP

>> PRIMA1  Proline-rich membrane anchor 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.9   4.0     0.049   1.1e+02      11      48 ..     139     175 ..     129     186 .. 0.60
   2 ?    9.5   6.4   0.00043      0.96      19      42 ..     293     316 ..     279     334 .. 0.56

  Alignments for each domain:
  == domain 1  score: 2.9 bits;  conditional E-value: 0.049
      PRIMA1  11 ekvtescqeacqcrrypplpppppppppprllsltaae 48 
                 + ++e +  +++ +  pp ppp++  pp  + ++++++
  KOO24044.1 139 QAAAEAAAAKGK-KGAPPPPPPAESVPPIAVEVPPMPD 175
                 444455555555.5566767777766666666666555 PP

  == domain 2  score: 9.5 bits;  conditional E-value: 0.00043
      PRIMA1  19 eacqcrrypplpppppppppprll 42 
                  a++  +  p p pppppppp+ +
  KOO24044.1 293 AAAKGAKGAPPPEPPPPPPPPKKV 316
                 444444444555555555555543 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (427 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1106  (0.0616878); expected 358.6 (0.02)
Passed bias filter:                      515  (0.0287244); expected 358.6 (0.02)
Passed Vit filter:                        69  (0.00384851); expected 17.9 (0.001)
Passed Fwd filter:                        14  (0.000780858); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.56u 0.23s 00:00:00.79 Elapsed: 00:00:00.38
# Mc/sec: 3338.85
//
Query:       KOO24045.1  [L=631]
Description: hypothetical protein Ctob_004092 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (631 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       272  (0.015171); expected 358.6 (0.02)
Passed bias filter:                      254  (0.014167); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.52u 0.23s 00:00:00.75 Elapsed: 00:00:00.40
# Mc/sec: 4688.21
//
Query:       KOO24046.1  [L=1294]
Description: hypothetical protein Ctob_004094 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.4e-09   36.0   0.1     0.0014   18.0   0.0    2.9  2  EF-hand_1     EF hand
    7.9e-09   35.9   0.3    1.2e-06   28.9   0.1    3.3  2  EF-hand_7     EF-hand domain pair
    8.2e-09   34.7   0.0     0.0016   18.2   0.0    2.9  2  EF-hand_6     EF-hand domain
    2.9e-05   23.8   0.0    9.3e-05   22.2   0.0    1.9  1  EF-hand_8     EF-hand domain pair
     0.0013   18.2   0.0     0.0062   16.0   0.0    2.3  1  EF-hand_5     EF hand
  ------ inclusion threshold ------
       0.01   16.0   0.6       0.01   16.0   0.6    9.7 10  Spc24         Spc24 subunit of Ndc80
        1.6    8.7   5.5         33    4.5   0.4    3.5  2  TOBE_3        TOBE-like domain


Domain annotation for each model (and alignments):
>> EF-hand_1  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.0   0.0   5.4e-07    0.0014       3      27 ..    1187    1211 ..    1185    1213 .. 0.89
   2 !   15.0   0.1     5e-06     0.013       1      28 [.    1221    1248 ..    1221    1249 .. 0.94

  Alignments for each domain:
  == domain 1  score: 18.0 bits;  conditional E-value: 5.4e-07
                  HHHHHHHTTTSSSEEEHHHHHHHHH CS
   EF-hand_1    3 keiFrefDkDgdGkIdfeEfkellk 27  
                   ++Fr  D +gdG +++eEf  ++ 
  KOO24046.1 1187 LDLFRSWDENGDGEVSREEFHLAMP 1211
                  689*****************99995 PP

  == domain 2  score: 15.0 bits;  conditional E-value: 5e-06
                  HHHHHHHHHTTTSSSEEEHHHHHHHHHH CS
   EF-hand_1    1 elkeiFrefDkDgdGkIdfeEfkellkk 28  
                  +++++F+e D Dg G I ++E+ ++lk+
  KOO24046.1 1221 DIDKLFSEWDSDGGGCIGYKELSKILKA 1248
                  699**********************986 PP

>> EF-hand_7  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.6   0.0   1.3e-05     0.033      46      69 ..    1186    1209 ..    1178    1211 .. 0.88
   2 !   28.9   0.1   4.5e-10   1.2e-06       6      70 ..    1188    1246 ..    1185    1247 .. 0.88

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 1.3e-05
   EF-hand_7   46 lellfkefDtdkdGvisfdEFlkl 69  
                  + +lf+ +D ++dG++s++EF+ +
  KOO24046.1 1186 VLDLFRSWDENGDGEVSREEFHLA 1209
                  6689*****************865 PP

  == domain 2  score: 28.9 bits;  conditional E-value: 4.5e-10
   EF-hand_7    6 eaFkelDtdgdgyldkeellrllrkifqgagegsklsdeelellfkefDtdkdGvisfdEFlkly 70  
                  + F++ D +gdg +++ee++ l          g ++++  +++lf e+D+d+ G+i + E+ k+ 
  KOO24046.1 1188 DLFRSWDENGDGEVSREEFH-LAMP-----ALGLDVPKADIDKLFSEWDSDGGGCIGYKELSKIL 1246
                  78******************.6665.....7888888888********************98875 PP

>> EF-hand_6  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.2   0.0   6.1e-07    0.0016       3      31 .]    1187    1214 ..    1185    1214 .. 0.89
   2 !   13.4   0.0   2.2e-05     0.056       2      27 ..    1222    1247 ..    1221    1253 .. 0.93

  Alignments for each domain:
  == domain 1  score: 18.2 bits;  conditional E-value: 6.1e-07
   EF-hand_6    3 reaFklfDkdgdGkidaeElrkalrkalg 31  
                   ++F+ +D +gdG++++eE+  a+  alg
  KOO24046.1 1187 LDLFRSWDENGDGEVSREEFHLAMP-ALG 1214
                  689******************9997.665 PP

  == domain 2  score: 13.4 bits;  conditional E-value: 2.2e-05
   EF-hand_6    2 lreaFklfDkdgdGkidaeElrkalr 27  
                  ++++F ++D dg G+i ++El k+l+
  KOO24046.1 1222 IDKLFSEWDSDGGGCIGYKELSKILK 1247
                  789*********************98 PP

>> EF-hand_8  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.2   0.0   3.6e-08   9.3e-05       2      49 ..    1198    1243 ..    1189    1248 .. 0.92

  Alignments for each domain:
  == domain 1  score: 22.2 bits;  conditional E-value: 3.6e-08
   EF-hand_8    2 kgkItreelrrilrilglkkglseeevdilfrefDtdgdGkisfeEFc 49  
                  +g+++ree++ ++ +lgl   + + ++d lf+e D dg G i+++E  
  KOO24046.1 1198 DGEVSREEFHLAMPALGLD--VPKADIDKLFSEWDSDGGGCIGYKELS 1243
                  8************556999..************************975 PP

>> EF-hand_5  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.0   2.4e-06    0.0062       3      21 ..    1188    1206 ..    1186    1210 .. 0.90

  Alignments for each domain:
  == domain 1  score: 16.0 bits;  conditional E-value: 2.4e-06
                  HHHHHH-SS-SSCE-HHHH CS
   EF-hand_5    3 dtFqaiDlNgDGkIskeEL 21  
                  d+F+  D NgDG +s+eE+
  KOO24046.1 1188 DLFRSWDENGDGEVSREEF 1206
                  689999************9 PP

>> Spc24  Spc24 subunit of Ndc80
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   1.2      0.91   2.3e+03       1      35 [.      22      56 ..      12      76 .. 0.70
   2 ?   -3.6   0.2       5.1   1.3e+04      24      39 ..      95     110 ..      79     122 .. 0.60
   3 ?   -2.6   0.4       2.5   6.4e+03      15      43 ..     193     221 ..     180     251 .. 0.58
   4 ?   -4.8   7.8         7   1.8e+04      14      48 ..     317     351 ..     308     424 .. 0.72
   5 ?   -1.4   2.8       1.1   2.8e+03      23      56 ..     425     458 ..     409     470 .. 0.63
   6 ?   16.0   0.6   4.1e-06      0.01       1      68 [.     547     620 ..     547     653 .. 0.85
   7 ?    5.8   0.2    0.0061        16       3      45 ..     697     739 ..     695     774 .. 0.81
   8 ?    2.4   1.2     0.071   1.8e+02       9      37 ..     812     840 ..     805     879 .. 0.60
   9 ?    2.1   1.9      0.09   2.3e+02      11      48 ..     946     983 ..     937    1036 .. 0.80
  10 ?    1.5   2.7      0.13   3.4e+02       1      57 [.    1063    1124 ..    1037    1126 .. 0.69

  Alignments for each domain:
  == domain 1  score: -1.2 bits;  conditional E-value: 0.91
       Spc24  1 kldnekfriakelsdleselesleselaelkeele 35
                +l++ k+r ak l++ e e ++ ++  + lk++ e
  KOO24046.1 22 ELETAKLREAKLLQQFELERTEWREMTQHLKQTHE 56
                46777777777777777777777766666665543 PP

  == domain 2  score: -3.6 bits;  conditional E-value: 5.1
       Spc24  24 eselaelkeeleelee 39 
                 +++lae+k++ e le 
  KOO24046.1  95 QQQLAEKKAKEERLEL 110
                 3566666666666554 PP

  == domain 3  score: -2.6 bits;  conditional E-value: 2.5
       Spc24  15 dleselesleselaelkeeleeleeesee 43 
                  lesel ++++e + + + +e   ++  e
  KOO24046.1 193 ALESELAAVRAEYDAKLAAMEHAHKKAME 221
                 45566666665555554444444444333 PP

  == domain 4  score: -4.8 bits;  conditional E-value: 7
       Spc24  14 sdleselesleselaelkeeleeleeeseekeser 48 
                 + le+e++sle++l++ + e  +l+  ++++e+e+
  KOO24046.1 317 ERLEREANSLEAQLRRARFETGQLQLVRVAQEDEL 351
                 56777777777777777777777777766644444 PP

  == domain 5  score: -1.4 bits;  conditional E-value: 1.1
       Spc24  23 leselaelkeeleeleeeseekeservedetllk 56 
                 l+ + ++ ++ leel ++ ++k+++ v++e+  +
  KOO24046.1 425 LRDQRRKFEADLEELHKQVNAKAKKSVAEEKQAR 458
                 4667777777777777777775555544444333 PP

  == domain 6  score: 16.0 bits;  conditional E-value: 4.1e-06
       Spc24   1 kldnekfriakelsdleselesleselaelkeeleeleeesee.....keser.ve.detllklklYrsLGiele 68 
                 +l+ + +r+ +e+++l++e ++l+ +l+ l   l+ele++  +     k +er +   ++ ++  lYr LG+ ++
  KOO24046.1 547 ELQAQMQRMKQEANELKDERDALRLKLHALDGGLAELERQHGQrlakeK-EERlELiRRQSVRRVLYRDLGLGWQ 620
                 5788999********************************9999888633.333344577779999******9985 PP

  == domain 7  score: 5.8 bits;  conditional E-value: 0.0061
       Spc24   3 dnekfriakelsdleselesleselaelkeeleeleeeseeke 45 
                 ++++ ++a+   ++e +l+ l+ +++elk+  +e e+++ +++
  KOO24046.1 697 EHKLATLAERFAHAEHQLSMLRGSQSELKTAAAEQEQHERAER 739
                 567789999**************************99998833 PP

  == domain 8  score: 2.4 bits;  conditional E-value: 0.071
       Spc24   9 iakelsdleselesleselaelkeeleel 37 
                 +  +   l+se+e+lesela  ++e++  
  KOO24046.1 812 LMRQRAGLQSEAEKLESELAAVRAEYDAK 840
                 55555556666666666666666665532 PP

  == domain 9  score: 2.1 bits;  conditional E-value: 0.09
       Spc24  11 kelsdleselesleselaelkeeleeleeeseekeser 48 
                  e + le+e++sle++l++ + e  +l+  ++++e+e+
  KOO24046.1 946 AERQRLEREANSLEAQLRRARFETGQLQLVRVAQEDEL 983
                 56788999999999999999999999998888855544 PP

  == domain 10  score: 1.5 bits;  conditional E-value: 0.13
       Spc24    1 kldnekfriakelsdleselesleselaelkeeleeleeesee...keser....ve.detllkl 57  
                  +l+ e++++ k+++  ++e +++    +el++++ el +e  e   +         + +++++kl
  KOO24046.1 1063 ELEAELVDLRKQVDARTEEWSKMVRGRHELEATILELRRELTEqqrS---YgeahLAmQANIQKL 1124
                  46677777777777777777777777777777777777777663330...133332336666665 PP

>> TOBE_3  TOBE-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.4   0.7     0.014        36      22      50 ..     313     341 ..     310     344 .. 0.70
   2 ?    4.5   0.4     0.013        33       8      49 ..     936     972 ..     933     976 .. 0.73

  Alignments for each domain:
  == domain 1  score: 4.4 bits;  conditional E-value: 0.014
      TOBE_3  22 RlELerlgdtgeliEvelprdrfeelgla 50 
                  lE erl+ +   +E++l r+rfe  +l+
  KOO24046.1 313 KLERERLEREANSLEAQLRRARFETGQLQ 341
                 3444444455559*********9987775 PP

  == domain 2  score: 4.5 bits;  conditional E-value: 0.013
      TOBE_3   8 patvrrirpvGpivRlELerlgdtgeliEvelprdrfeelgl 49 
                 +a v r+  ++  +RlE   +      +E++l r+rfe  +l
  KOO24046.1 936 AADVERAKQLAERQRLER--E---ANSLEAQLRRARFETGQL 972
                 677777777777777744..3...337*********998777 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1294 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2232  (0.124491); expected 358.6 (0.02)
Passed bias filter:                      542  (0.0302304); expected 358.6 (0.02)
Passed Vit filter:                        84  (0.00468515); expected 17.9 (0.001)
Passed Fwd filter:                        45  (0.0025099); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 1.60u 0.34s 00:00:01.94 Elapsed: 00:00:00.59
# Mc/sec: 6576.11
//
Query:       KOO24047.1  [L=579]
Description: tetratricopeptide repeat protein 26 isoform 1 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.1e-14   52.6  23.0    3.7e-06   27.1   0.3    5.4  6  ANAPC3      Anaphase-promoting complex, cyclosome, subunit 3
      7e-13   48.9  22.3    0.00011   22.6   2.3    7.2  7  TPR_19      Tetratricopeptide repeat
    1.8e-08   34.9  20.4      0.032   14.9   0.1    6.7  7  TPR_16      Tetratricopeptide repeat
    4.4e-08   33.3  18.4       0.25   12.3   0.1    8.5  8  TPR_14      Tetratricopeptide repeat
    6.3e-07   29.0  29.2      0.011   15.7   0.8    8.7  8  TPR_2       Tetratricopeptide repeat
      5e-06   26.6   8.7     0.0011   19.0   0.9    4.7  5  TPR_9       Tetratricopeptide repeat
    0.00087   18.6   0.2    0.00087   18.6   0.2    4.2  5  TPR_15      Tetratricopeptide repeat
     0.0016   17.9   1.7      0.013   14.9   0.4    2.9  3  Coatomer_E  Coatomer epsilon subunit
     0.0017   18.3   5.9       0.16   12.1   0.1    4.4  4  TPR_7       Tetratricopeptide repeat
     0.0018   18.5   5.1       0.49   10.9   0.1    5.3  5  TPR_17      Tetratricopeptide repeat
      0.002   18.6   1.9        1.1   10.0   0.5    5.0  5  TPR_4       Tetratricopeptide repeat
     0.0026   17.9   0.9        2.3    8.7   0.2    4.5  4  PPR         PPR repeat
     0.0051   16.4   3.9        2.9    7.5   0.0    4.2  4  HrpB1_HrpK  Bacterial type III secretion protein (HrpB1_HrpK)
     0.0074   16.6  21.4          3    8.2   2.6    7.2  6  TPR_12      Tetratricopeptide repeat
  ------ inclusion threshold ------
       0.04   13.8  11.2        9.1    6.3   0.0    5.9  6  TPR_10      Tetratricopeptide repeat
      0.041   14.1   0.4         10    6.4   0.0    3.1  2  PPR_2       PPR repeat family
      0.057   13.3  17.1      0.074   12.9   0.6    6.1  6  TPR_1       Tetratricopeptide repeat
      0.062   13.3   0.0       0.16   12.0   0.0    1.6  1  DUF3768     Protein of unknown function (DUF3768)
      0.063   13.9   0.2      0.063   13.9   0.2    6.6  6  TPR_6       Tetratricopeptide repeat
      0.078   13.1  20.2      0.064   13.3   1.4    5.2  6  Fis1_TPR_C  Fis1 C-terminal tetratricopeptide repeat
       0.39   11.1   9.0          5    7.6   0.2    5.1  5  TPR_8       Tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> ANAPC3  Anaphase-promoting complex, cyclosome, subunit 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.1   0.3   4.3e-09   3.7e-06      20      76 ..      75     132 ..      66     137 .. 0.91
   2 !   13.2   4.8   9.4e-05      0.08      20      80 ..     169     230 ..     153     232 .. 0.75
   3 !   10.5   4.1   0.00065      0.55       3      71 ..     186     257 ..     185     262 .. 0.84
   4 ?   -0.8   0.0       2.2   1.9e+03      33      79 ..     316     360 ..     308     363 .. 0.76
   5 !    8.5   0.1    0.0026       2.2      30      80 ..     387     438 ..     382     440 .. 0.91
   6 !   13.2   0.4   9.5e-05     0.081      26      69 ..     456     499 ..     443     512 .. 0.82

  Alignments for each domain:
  == domain 1  score: 27.1 bits;  conditional E-value: 4.3e-09
                 H--HHHHHHHHHHHHHTT-HHHHHHHHHCT.SHHHC-HHHHHHHHHHHHHTT-HHHHH CS
      ANAPC3  20 tespedayllAlclylngqykrAyellrka.klnskslgcrylfAqcllkLkkyeeAi 76 
                 ++++e +++lA++ +++g+y +A++ ++++ ++ s+++ +++ +A cl  ++ ++eA+
  KOO24047.1  75 KQDEERRLWLAYAAFHLGDYGKALDAYQNLlDSGSHDPMIHVFMACCLERMQMHQEAE 132
                 6899**************************9999999999999999999********8 PP

  == domain 2  score: 13.2 bits;  conditional E-value: 9.4e-05
                 H--HHHHHHHHHHHHHTT-HHHHHHHHHCTSHHHC-HHHHHHH.HHHHHHTT-HHHHHHHH- CS
      ANAPC3  20 tespedayllAlclylngqykrAyellrkaklnskslgcrylf.AqcllkLkkyeeAiaaLe 80 
                 ++   d + lA  ++l++ y++A ++++++ l++++  ++ ++ A c++kL+ y+  + +L 
  KOO24047.1 169 ADTTLDQLSLASIHFLRNHYQEATDIYKRLLLENRDFTALNVYvALCYYKLDYYDVSLEILA 230
                 3344456669********************6666666555554289999*****99888875 PP

  == domain 3  score: 10.5 bits;  conditional E-value: 0.00065
                 T-HHHHHHHHHHHH.HHH--HHHHHHH.HHHHHHTT-HHHHHHHHHCT.SHHHC-HHHHHHHHHHHHHT..T- CS
      ANAPC3   3 nnyknAiflaerllaaetespedayll.AlclylngqykrAyellrka.klnskslgcrylfAqcllkL..kk 71 
                 n+y++A  ++ rll  e+++  ++  + Alc+y++  y+  +e+l  + +  + s  ++ l+A  ++ L  +k
  KOO24047.1 186 NHYQEATDIYKRLL-LENRDFTALNVYvALCYYKLDYYDVSLEILAAYlQAHPDSALALNLKACNQFRLydGK 257
                 789***********.*******999988********************8888888888888886666664455 PP

  == domain 4  score: -0.8 bits;  conditional E-value: 2.2
                 HHHTT-HHHHHHHHHCTSHHHC-HHHHHHHHHHHHHTT-HHHHHHHH CS
      ANAPC3  33 lylngqykrAyellrkaklnskslgcrylfAqcllkLkkyeeAiaaL 79 
                 + + g+ ++A+el ++   ++ s+   +l++ + l+ ++  + + +L
  KOO24047.1 316 HMHHGEVQEAFELMKDV--EPASPSEYILKGVTNLAVGQAMDSREHL 360
                 67889999******999..6666666777777777776666666655 PP

  == domain 5  score: 8.5 bits;  conditional E-value: 0.0026
                 HHHHHHTT-HHHHHHHHHCT.SHHHC-HHHHHHHHHHHHHTT-HHHHHHHH- CS
      ANAPC3  30 AlclylngqykrAyellrka.klnskslgcrylfAqcllkLkkyeeAiaaLe 80 
                 A c++ + q++  + +l++     ++++  +y fA +  + +ky+eA+ aL 
  KOO24047.1 387 ASCFFILRQFDDVLIYLNSVeAYFPSDPTFLYNFAIAKAAAGKYKEAEPALL 438
                 89999999************88888999********************9986 PP

  == domain 6  score: 13.2 bits;  conditional E-value: 9.5e-05
                 HHHHHHHHHHTT-HHHHHHHHHCTSHHHC-HHHHHHHHHHHHHT CS
      ANAPC3  26 ayllAlclylngqykrAyellrkaklnskslgcrylfAqcllkL 69 
                  ++lA cl  ng+  +A e++ k++   +s + + l+A  ++  
  KOO24047.1 456 QMWLARCLVMNGKAREAWEIYLKMEGTQESFAMLQLLANDCYRA 499
                 68**********************88888989999999777765 PP

>> TPR_19  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.7   0.0   0.00033      0.29      19      62 ..      72     115 ..      66     121 .. 0.84
   2 !   12.7   0.0   0.00016      0.14       5      46 ..      92     133 ..      88     137 .. 0.95
   3 !   22.6   2.3   1.3e-07   0.00011       5      66 ..     186     247 ..     183     247 .. 0.95
   4 ?    4.8   0.0     0.047        40      25      57 ..     306     338 ..     291     343 .. 0.85
   5 !   10.7   0.1   0.00067      0.57       7      52 ..     396     441 ..     391     443 .. 0.86
   6 ?    3.9   0.1     0.093        79      19      44 ..     447     472 ..     439     479 .. 0.82
   7 ?    4.5   0.2     0.059        50       2      63 ..     464     523 ..     463     526 .. 0.81

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.00033
      TPR_19  19 qedpknaearllLAeallalgqldeAealLdalpeedpddarya 62 
                 +e+ +++e rl+LA a + lg++ +A ++ + l+++   d+ ++
  KOO24047.1  72 EEAKQDEERRLWLAYAAFHLGDYGKALDAYQNLLDSGSHDPMIH 115
                 67889***********************9999999877777666 PP

  == domain 2  score: 12.7 bits;  conditional E-value: 0.00016
      TPR_19   5 gdyaeAlalleqalqedpknaearllLAeallalgqldeAea 46 
                 gdy  Al++++++l+   +++ +   +A +l  +   +eAe+
  KOO24047.1  92 GDYGKALDAYQNLLDSGSHDPMIHVFMACCLERMQMHQEAEE 133
                 9***************************************98 PP

  == domain 3  score: 22.6 bits;  conditional E-value: 1.3e-07
      TPR_19   5 gdyaeAlalleqalqedpknaearllLAeallalgqldeAealLdalpeedpddaryasLlA 66 
                 + y+eA ++++++l e+ +  ++  + A ++++l  +d   ++L+a++++ pd+a + +L+A
  KOO24047.1 186 NHYQEATDIYKRLLLENRDFTALNVYVALCYYKLDYYDVSLEILAAYLQAHPDSALALNLKA 247
                 679**************************************************888888887 PP

  == domain 4  score: 4.8 bits;  conditional E-value: 0.047
      TPR_19  25 aearllLAeallalgqldeAealLdalpeedpd 57 
                 +earl+L++ ++  g+++eA +l++++ ++ p 
  KOO24047.1 306 PEARLNLVIYHMHHGEVQEAFELMKDVEPASPS 338
                 89**********************999998887 PP

  == domain 5  score: 10.7 bits;  conditional E-value: 0.00067
      TPR_19   7 yaeAlalleqalqedpknaearllLAeallalgqldeAealLdalp 52 
                 +++ l +l ++ ++ p ++  +++ A+a  a+g ++eAe +L al+
  KOO24047.1 396 FDDVLIYLNSVEAYFPSDPTFLYNFAIAKAAAGKYKEAEPALLALQ 441
                 556666788888999************************9998875 PP

  == domain 6  score: 3.9 bits;  conditional E-value: 0.093
      TPR_19  19 qedpknaearllLAeallalgqldeA 44 
                 ++ +k+   +++LA++l+ +g   eA
  KOO24047.1 447 EDLAKDYIFQMWLARCLVMNGKAREA 472
                 66777888899**********99998 PP

  == domain 7  score: 4.5 bits;  conditional E-value: 0.059
      TPR_19   2 laegdyaeAlalleqalqedpknaearllLAeallalgqldeAealLdalpeedpddaryas 63 
                 +++g+  eA +++ ++ +   ++ + + lLA+ ++ +g +  A ++ d+l + dp+ ++y++
  KOO24047.1 464 VMNGKAREAWEIYLKM-EGTQESFAMLQLLANDCYRAGAFLYAAKAFDTLERLDPN-PEYWD 523
                 6778888888888886.5555555556679**************************.99985 PP

>> TPR_16  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.1   0.0       1.8   1.5e+03       6      41 ..      21      53 ..      19      56 .. 0.75
   2 !   14.9   0.1   3.7e-05     0.032      38      68 .]      82     112 ..      79     137 .. 0.77
   3 !    7.7   0.8    0.0065       5.6       2      68 .]     177     240 ..     176     240 .. 0.93
   4 ?    3.4   1.6      0.15   1.3e+02      13      54 ..     222     262 ..     213     270 .. 0.79
   5 ?    4.6   0.0     0.063        54      34      66 ..     306     338 ..     294     340 .. 0.91
   6 !    8.7   0.7    0.0031       2.6       1      48 [.     418     467 ..     418     468 .. 0.78
   7 !    7.5   0.2    0.0078       6.6      15      65 ..     468     517 ..     466     519 .. 0.90

  Alignments for each domain:
  == domain 1  score: -0.1 bits;  conditional E-value: 1.8
      TPR_16  6 aalragdyddAaaaleaalkrdpssPdaaeAllllg 41
                ++l+a+dy+ A  + e  +k++    d  +A+ +++
  KOO24047.1 21 SLLNARDYTGAMTLIEFERKMF---MDKKQASGWRA 53
                7899*******99988777777...66666666665 PP

  == domain 2  score: 14.9 bits;  conditional E-value: 3.7e-05
      TPR_16  38 lllgdaalrqgrlaeAaalyraalraapdap 68 
                 l+l+ aa+++g++ +A+++y+ +l+ ++ +p
  KOO24047.1  82 LWLAYAAFHLGDYGKALDAYQNLLDSGSHDP 112
                 6777777777777777777776666666554 PP

  == domain 3  score: 7.7 bits;  conditional E-value: 0.0065
      TPR_16   2 alaraalragdyddAaaaleaalkrdpssPdaaeAllllgdaalrqgrlaeAaalyraalraapdap 68 
                  la +++ +++y++A   ++++l  +    d  +   + +++++++  ++  ++ ++a+l+a pd++
  KOO24047.1 177 SLASIHFLRNHYQEATDIYKRLLLEN---RDFTALNVYVALCYYKLDYYDVSLEILAAYLQAHPDSA 240
                 5777888899****************...***********************************985 PP

  == domain 4  score: 3.4 bits;  conditional E-value: 0.15
      TPR_16  13 yddAaaaleaalkrdpssPdaaeAllllgdaalrq..grlaeAa 54 
                 yd  ++ l a+l ++   Pd a Al+l++   +r+  g  aeA+
  KOO24047.1 222 YDVSLEILAAYLQAH---PDSALALNLKACNQFRLydGKAAEAE 262
                 88899999*******...********999888888555555555 PP

  == domain 5  score: 4.6 bits;  conditional E-value: 0.063
      TPR_16  34 aeAllllgdaalrqgrlaeAaalyraalraapd 66 
                 +eA+l+l   + ++g+++eA +l +   +a+p+
  KOO24047.1 306 PEARLNLVIYHMHHGEVQEAFELMKDVEPASPS 338
                 78*********************9999999886 PP

  == domain 6  score: 8.7 bits;  conditional E-value: 0.0031
      TPR_16   1 lalaraalragdyddAaaaleaalkrdpssPd.....aaeAllllgdaalrqg 48 
                 ++ a a ++ag+y +A++al a+  +++  ++     ++ ++++l++++  +g
  KOO24047.1 418 YNFAIAKAAAGKYKEAEPALLAL-QSGS--SAedlakDYIFQMWLARCLVMNG 467
                 6789999*************433.3333..444589999999**999997665 PP

  == domain 7  score: 7.5 bits;  conditional E-value: 0.0078
      TPR_16  15 dAaaaleaalkrdpssPdaaeAllllgdaalrqgrlaeAaalyraalraap 65 
                 +A++a+e++lk+ +     a  +ll +d++ r+g +  Aa +++ + r +p
  KOO24047.1 468 KAREAWEIYLKMEGTQESFAMLQLLANDCY-RAGAFLYAAKAFDTLERLDP 517
                 69***********99999999999999999.99999999999999888887 PP

>> TPR_14  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.3   0.1   0.00029      0.25       4      42 ..      81     119 ..      78     119 .. 0.89
   2 ?    3.9   0.0      0.14   1.2e+02       5      38 ..     176     209 ..     174     216 .. 0.83
   3 !    7.6   0.3    0.0094         8      11      40 ..     216     245 ..     206     247 .. 0.83
   4 ?    7.2   0.0     0.012        11       1      33 [.     306     338 ..     306     345 .. 0.89
   5 ?    4.4   0.0     0.095        81       4      39 ..     383     418 ..     381     423 .. 0.89
   6 ?    2.7   0.3      0.34   2.9e+02       8      27 ..     421     440 ..     414     462 .. 0.82
   7 ?    0.0   0.0       2.5   2.2e+03       5      38 ..     457     490 ..     454     496 .. 0.73
   8 ?    0.4   0.2       1.9   1.6e+03       4      33 ..     489     518 ..     486     524 .. 0.65

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 0.00029
      TPR_14   4 llalaeallalGdpdeAiallrralalaPddaeawllla 42 
                 +l la a ++lGd+ +A+++++ +l+ +  d+ ++ ++a
  KOO24047.1  81 RLWLAYAAFHLGDYGKALDAYQNLLDSGSHDPMIHVFMA 119
                 67899999*****************99999999888776 PP

  == domain 2  score: 3.9 bits;  conditional E-value: 0.14
      TPR_14   5 lalaeallalGdpdeAiallrralalaPddaeaw 38 
                 l la++++ +  ++eA ++++r+l  + d+ +++
  KOO24047.1 176 LSLASIHFLRNHYQEATDIYKRLLLENRDFTALN 209
                 6799*******************98887766655 PP

  == domain 3  score: 7.6 bits;  conditional E-value: 0.0094
      TPR_14  11 llalGdpdeAiallrralalaPddaeawll 40 
                 ++ l+ +d ++++l ++l+++Pd+a a+ l
  KOO24047.1 216 YYKLDYYDVSLEILAAYLQAHPDSALALNL 245
                 6778889999***************99855 PP

  == domain 4  score: 7.2 bits;  conditional E-value: 0.012
      TPR_14   1 peallalaeallalGdpdeAiallrralalaPd 33 
                 pea+l l+ ++++ G+ +eA +l +++  + P+
  KOO24047.1 306 PEARLNLVIYHMHHGEVQEAFELMKDVEPASPS 338
                 799*********************999777665 PP

  == domain 5  score: 4.4 bits;  conditional E-value: 0.095
      TPR_14   4 llalaeallalGdpdeAiallrralalaPddaeawl 39 
                 ++++a+ ++ l+++d+ + +l+ + a +P+d+++++
  KOO24047.1 383 RQCMASCFFILRQFDDVLIYLNSVEAYFPSDPTFLY 418
                 57899999***********************99876 PP

  == domain 6  score: 2.7 bits;  conditional E-value: 0.34
      TPR_14   8 aeallalGdpdeAiallrra 27 
                 a a +a+G+++eA+ +l ++
  KOO24047.1 421 AIAKAAAGKYKEAEPALLAL 440
                 78899*********999876 PP

  == domain 7  score: 0.0 bits;  conditional E-value: 2.5
      TPR_14   5 lalaeallalGdpdeAiallrralalaPddaeaw 38 
                 + la+ l  +G+ +eA +++ ++  ++ ++a ++
  KOO24047.1 457 MWLARCLVMNGKAREAWEIYLKMEGTQESFAMLQ 490
                 5678888888888888888888766666666555 PP

  == domain 8  score: 0.4 bits;  conditional E-value: 1.9
      TPR_14   4 llalaeallalGdpdeAiallrralalaPd 33 
                 l++la  ++++G +  A+++++ + +l+P+
  KOO24047.1 489 LQLLANDCYRAGAFLYAAKAFDTLERLDPN 518
                 667777777777765566666666666776 PP

>> TPR_2  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.8   1.3e-05     0.011       6      28 ..      83     105 ..      80     107 .. 0.93
   2 ?    2.3   0.0      0.27   2.3e+02       4      22 ..     115     133 ..     112     138 .. 0.84
   3 !    8.5   0.1    0.0027       2.3       7      32 ..     178     203 ..     175     205 .. 0.90
   4 ?    4.9   0.5      0.04        34       6      33 ..     211     238 ..     207     239 .. 0.84
   5 ?   -0.8   0.0       2.7   2.3e+03      11      24 ..     316     329 ..     314     331 .. 0.83
   6 ?    3.8   0.2      0.09        77       3      24 ..     416     437 ..     414     441 .. 0.85
   7 ?   -1.9   0.0       5.8   4.9e+03       6      20 ..     458     472 ..     455     478 .. 0.79
   8 !    7.7   0.4     0.005       4.3       5      33 ..     490     518 ..     487     519 .. 0.94

  Alignments for each domain:
  == domain 1  score: 15.7 bits;  conditional E-value: 1.3e-05
       TPR_2   6 nlGlayyklgdyeeAleafekAl 28 
                 +l++a+++lgdy +Al+a++  l
  KOO24047.1  83 WLAYAAFHLGDYGKALDAYQNLL 105
                 79******************987 PP

  == domain 2  score: 2.3 bits;  conditional E-value: 0.27
       TPR_2   4 lynlGlayyklgdyeeAle 22 
                 +  +++++++++ ++eA+e
  KOO24047.1 115 HVFMACCLERMQMHQEAEE 133
                 6779*************98 PP

  == domain 3  score: 8.5 bits;  conditional E-value: 0.0027
       TPR_2   7 lGlayyklgdyeeAleafekAleldP 32 
                 l+ +++ +++y+eA + +++ l  + 
  KOO24047.1 178 LASIHFLRNHYQEATDIYKRLLLENR 203
                 899******************98876 PP

  == domain 4  score: 4.9 bits;  conditional E-value: 0.04
       TPR_2   6 nlGlayyklgdyeeAleafekAleldPn 33 
                 + +l+yykl+ y+  le + + l+  P+
  KOO24047.1 211 YVALCYYKLDYYDVSLEILAAYLQAHPD 238
                 779**********999988888887776 PP

  == domain 5  score: -0.8 bits;  conditional E-value: 2.7
       TPR_2  11 yyklgdyeeAleaf 24 
                 +++ g+ +eA e++
  KOO24047.1 316 HMHHGEVQEAFELM 329
                 8999******8876 PP

  == domain 6  score: 3.8 bits;  conditional E-value: 0.09
       TPR_2   3 alynlGlayyklgdyeeAleaf 24 
                  lyn + a +++g+y+eA+ a+
  KOO24047.1 416 FLYNFAIAKAAAGKYKEAEPAL 437
                 689999999*********9776 PP

  == domain 7  score: -1.9 bits;  conditional E-value: 5.8
       TPR_2   6 nlGlayyklgdyeeA 20 
                 +l++++  +g+  eA
  KOO24047.1 458 WLARCLVMNGKAREA 472
                 788999888887777 PP

  == domain 8  score: 7.7 bits;  conditional E-value: 0.005
       TPR_2   5 ynlGlayyklgdyeeAleafekAleldPn 33 
                   l++ +y++g +  A++af+   +ldPn
  KOO24047.1 490 QLLANDCYRAGAFLYAAKAFDTLERLDPN 518
                 679*************************8 PP

>> TPR_9  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.5   0.1     0.044        38      36      64 ..      85     113 ..      76     121 .. 0.81
   2 !   19.0   0.9   1.3e-06    0.0011       2      69 ..     179     246 ..     178     248 .. 0.94
   3 ?    0.1   0.0       1.1     9e+02      16      50 ..     324     358 ..     314     366 .. 0.82
   4 ?    3.3   0.0      0.11        92      10      52 ..     395     437 ..     393     448 .. 0.91
   5 ?   -2.8   0.1       8.5   7.3e+03      41      60 ..     498     517 ..     497     520 .. 0.75

  Alignments for each domain:
  == domain 1  score: 4.5 bits;  conditional E-value: 0.044
       TPR_9  36 GlllaqlGclsaAladLeaylalapdapd 64 
                 + + ++lG++ +Al++ +  l+   ++p 
  KOO24047.1  85 AYAAFHLGDYGKALDAYQNLLDSGSHDPM 113
                 678899**********9999988777775 PP

  == domain 2  score: 19.0 bits;  conditional E-value: 1.3e-06
       TPR_9   2 kaiaireedweralavverllllaPddpeerrdRGlllaqlGclsaAladLeaylalapdapdaeair 69 
                  +i+  ++++++a  ++ rlll + d   +    +l++++l+ + + l+ L ayl+  pd + a  ++
  KOO24047.1 179 ASIHFLRNHYQEATDIYKRLLLENRDFTALNVYVALCYYKLDYYDVSLEILAAYLQAHPDSALALNLK 246
                 689999******************************************************99988776 PP

  == domain 3  score: 0.1 bits;  conditional E-value: 1.1
       TPR_9  16 avverllllaPddpeerrdRGlllaqlGclsaAla 50 
                 ++ e++  + P +p+e+   G+ +  +G+    ++
  KOO24047.1 324 EAFELMKDVEPASPSEYILKGVTNLAVGQAMDSRE 358
                 567999999*********99999999998766655 PP

  == domain 4  score: 3.3 bits;  conditional E-value: 0.11
       TPR_9  10 dweralavverllllaPddpeerrdRGlllaqlGclsaAladL 52 
                 +++  l +++++ + +P dp  ++  +++ a  G +++A  +L
  KOO24047.1 395 QFDDVLIYLNSVEAYFPSDPTFLYNFAIAKAAAGKYKEAEPAL 437
                 78889999999999************************98777 PP

  == domain 5  score: -2.8 bits;  conditional E-value: 8.5
       TPR_9  41 qlGclsaAladLeaylalap 60 
                 + G++  A++++++  +l+p
  KOO24047.1 498 RAGAFLYAAKAFDTLERLDP 517
                 77999999999988766666 PP

>> TPR_15  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.6   0.2     1e-06   0.00087     208     269 ..      74     133 ..      66     139 .. 0.87
   2 ?   -0.3   0.3      0.57   4.9e+02     181     242 ..     142     200 ..     130     213 .. 0.58
   3 ?   -1.7   0.0       1.5   1.3e+03      12      41 ..     310     338 ..     305     376 .. 0.77
   4 ?   -0.7   0.1      0.79   6.8e+02     220     268 ..     386     434 ..     383     440 .. 0.78
   5 ?    1.7   0.8      0.14   1.2e+02     233     270 ..     436     475 ..     403     480 .. 0.69

  Alignments for each domain:
  == domain 1  score: 18.6 bits;  conditional E-value: 1e-06
      TPR_15 208 araesdasLwgplaaAlllLgrpkkALeylrkqakenrkdplwllaYADaleqagradeAwr 269
                 a+++++++Lw+++aa    Lg++ kAL+ +++ +++ + dp++ +  A  le+ +  +eA++
  KOO24047.1  74 AKQDEERRLWLAYAA--FHLGDYGKALDAYQNLLDSGSHDPMIHVFMACCLERMQMHQEAEE 133
                 445788999999987..789**********************************99999975 PP

  == domain 2  score: -0.3 bits;  conditional E-value: 0.57
      TPR_15 181 elraallWlliDlgrraeLrellkawkaraesdasLwgp.laaAlllLgrpkkALeylrkqak 242
                  l+++ll+ l  + +++   +l+++ ++   +d++L++  la+   l + +++A + +++ + 
  KOO24047.1 142 PLQNRLLFHLAHRMNDE--AKLMAHHQKL--ADTTLDQLsLASIHFLRNHYQEATDIYKRLLL 200
                 56777777777666666..3666666654..55555543033333333445556665555555 PP

  == domain 3  score: -1.7 bits;  conditional E-value: 1.5
      TPR_15  12 lklatllykqgdvkkAlevLkeaaqkaaps 41 
                 l+l   ++  g+v++A+e + ++++ a ps
  KOO24047.1 310 LNLVIYHMHHGEVQEAFELM-KDVEPASPS 338
                 56666788999999999999.566666443 PP

  == domain 4  score: -0.7 bits;  conditional E-value: 0.79
      TPR_15 220 laaAlllLgrpkkALeylrkqakenrkdplwllaYADaleqagradeAw 268
                 +a+    L + +  L yl+   +  ++dp  l  +A a  +ag+  eA+
  KOO24047.1 386 MASCFFILRQFDDVLIYLNSVEAYFPSDPTFLYNFAIAKAAAGKYKEAE 434
                 5666666777777788888888888899999999999999999888886 PP

  == domain 5  score: 1.7 bits;  conditional E-value: 0.14
      TPR_15 233 ALeylrk..qakenrkdplwllaYADaleqagradeAwrl 270
                 AL  l+    a+  +kd+  ++  A  l ++g+a eAw++
  KOO24047.1 436 ALLALQSgsSAEDLAKDYIFQMWLARCLVMNGKAREAWEI 475
                 4444444335566789999999999999999999999987 PP

>> Coatomer_E  Coatomer epsilon subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.4   1.5e-05     0.013       5     154 ..      82     226 ..      78     242 .. 0.83
   2 ?   -0.1   0.0      0.58   4.9e+02     196     231 ..     409     443 ..     394     477 .. 0.77
   3 ?   -2.9   0.0       4.1   3.5e+03     178     202 ..     464     488 ..     453     496 .. 0.71

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 1.5e-05
                 THHHHHHHHTT-HHHHHHHHHS---SHHHHHHHHHHHHHHHHHTT-HHHHHHHS-TTS-HHHHHHHHHHHHHH-STTHHHHHHHHHHHHHS----S-HH CS
  Coatomer_E   5 LfdvrnefYlGaYqkaineadvaslseeekeerdvylyrsylAlgsaqiviseIkesaatelqAvrllaeylnspsrkeeilaelkeeladseiesnev 103
                 L+ +  +f+lG Y ka++  +    s  +++   v+++ +   ++  q++ +  +++a+ +lq   l++ +  +  + e+ l   +++lad +   +  
  KOO24047.1  82 LWLAYAAFHLGDYGKALDAYQNLLDSGSHDPMIHVFMACCLERMQMHQEAEERARKGAPGPLQNRLLFHLAHRM--NDEAKLMAHHQKLADTTL--D-- 174
                 6666779**********9889999999999*******99988888888888888899999**********9999..555556666778888777..3.. PP

                 HHHHHHHHHHHTT-HHHHHHHHTT-..-SHHHHHHHHHHHHHTT-HHHHHHHH CS
  Coatomer_E 104 lrllaaivflkegdfddalkllkks..enLeavAlkvqillklhrvdlAekel 154
                  +l  a++ +  +++++a ++ k+   en + +Al+v++ l   ++d+    l
  KOO24047.1 175 -QLSLASIHFLRNHYQEATDIYKRLllENRDFTALNVYVALCYYKLDYYDVSL 226
                 .5666888888999**********889************99988888865554 PP

  == domain 2  score: -0.1 bits;  conditional E-value: 0.58
                 HS---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH- CS
  Coatomer_E 196 kykstplllngkAvvslllgryeeAeslLkeaLdkd 231
                  ++s p  l   A+++ + g+y+eAe  L  aL++ 
  KOO24047.1 409 YFPSDPTFLYNFAIAKAAAGKYKEAEPALL-ALQSG 443
                 357888999999999999999999999885.56555 PP

  == domain 3  score: -2.9 bits;  conditional E-value: 4.1
                 H-TTHHHHHHHHHHHHHHHS---HH CS
  Coatomer_E 178 vggekiqdAyyifqelsekykstpl 202
                 v  +k ++A+ i+  + ++ +s  +
  KOO24047.1 464 VMNGKAREAWEIYLKMEGTQESFAM 488
                 4457899999999999988655544 PP

>> TPR_7  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.4   0.1     0.026        22       5      26 ..      84     105 ..      84     112 .. 0.80
   2 ?   -0.3   0.0       1.6   1.4e+03       4      20 ..     117     133 ..     115     139 .. 0.86
   3 !   12.1   0.1   0.00018      0.16       4      26 ..     177     199 ..     176     208 .. 0.85
   4 ?   -1.8   0.1         5   4.3e+03      11      20 ..     426     435 ..     417     441 .. 0.73

  Alignments for each domain:
  == domain 1  score: 5.4 bits;  conditional E-value: 0.026
       TPR_7   5 LarlysrlGdyeeAielyeqsL 26 
                 La + + lGdy +A++ y+ +L
  KOO24047.1  84 LAYAAFHLGDYGKALDAYQNLL 105
                 6778889************966 PP

  == domain 2  score: -0.3 bits;  conditional E-value: 1.6
       TPR_7   4 nLarlysrlGdyeeAie 20 
                  +a + +r++ ++eA+e
  KOO24047.1 117 FMACCLERMQMHQEAEE 133
                 689999*********98 PP

  == domain 3  score: 12.1 bits;  conditional E-value: 0.00018
       TPR_7   4 nLarlysrlGdyeeAielyeqsL 26 
                  La++++ +++y+eA ++y+++L
  KOO24047.1 177 SLASIHFLRNHYQEATDIYKRLL 199
                 79*******************55 PP

  == domain 4  score: -1.8 bits;  conditional E-value: 5
       TPR_7  11 rlGdyeeAie 20 
                 + G+y+eA+ 
  KOO24047.1 426 AAGKYKEAEP 435
                 5799999986 PP

>> TPR_17  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.7   0.1       1.1   9.1e+02      18      33 ..      83      98 ..      81      99 .. 0.87
   2 ?    2.1   0.2      0.37   3.2e+02       6      21 ..     233     248 ..     229     262 .. 0.84
   3 ?   -1.5   0.0       5.3   4.5e+03      16      34 .]     340     358 ..     332     358 .. 0.80
   4 !   10.9   0.1   0.00058      0.49       2      33 ..     402     434 ..     401     434 .. 0.92
   5 ?    1.4   0.0      0.64   5.4e+02      18      33 ..     458     473 ..     451     474 .. 0.86

  Alignments for each domain:
  == domain 1  score: 0.7 bits;  conditional E-value: 1.1
      TPR_17 18 nLAelllknGdlmtAr 33
                 LA++  ++Gd+++A+
  KOO24047.1 83 WLAYAAFHLGDYGKAL 98
                6999999******996 PP

  == domain 2  score: 2.1 bits;  conditional E-value: 0.37
      TPR_17   6 leldPnnadaynnLAe 21 
                 l+ +P++a a+n++A 
  KOO24047.1 233 LQAHPDSALALNLKAC 248
                 7889********9996 PP

  == domain 3  score: -1.5 bits;  conditional E-value: 5.3
      TPR_17  16 ynnLAelllknGdlmtArq 34 
                 y +++++ l  G+ m+ r+
  KOO24047.1 340 YILKGVTNLAVGQAMDSRE 358
                 7889999999****99875 PP

  == domain 4  score: 10.9 bits;  conditional E-value: 0.00058
      TPR_17   2 ylkaleld.PnnadaynnLAelllknGdlmtAr 33 
                 yl+++e + P+++ +++n A + + +G++++A+
  KOO24047.1 402 YLNSVEAYfPSDPTFLYNFAIAKAAAGKYKEAE 434
                 999999955**********************96 PP

  == domain 5  score: 1.4 bits;  conditional E-value: 0.64
      TPR_17  18 nLAelllknGdlmtAr 33 
                  LA++l +nG+ ++A 
  KOO24047.1 458 WLARCLVMNGKAREAW 473
                 69**********9995 PP

>> TPR_4  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.0   0.5    0.0013       1.1       4      23 ..      81     100 ..      80     103 .. 0.91
   2 ?   -1.7   0.0       8.2     7e+03       5      21 ..     176     192 ..     175     195 .. 0.84
   3 ?   -1.3   0.0       6.1   5.2e+03       1      20 [.     306     325 ..     306     327 .. 0.87
   4 ?    1.8   0.0      0.63   5.4e+02       7      24 ..     420     437 ..     414     439 .. 0.82
   5 ?   -0.1   0.0       2.5   2.2e+03       4      20 ..     456     472 ..     455     472 .. 0.88

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.0013
       TPR_4   4 llaLArallalGdldeAral 23 
                 +l+LA a+++lGd+  A+++
  KOO24047.1  81 RLWLAYAAFHLGDYGKALDA 100
                 79***************986 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 8.2
       TPR_4   5 laLArallalGdldeAr 21 
                 l LA  ++++ ++ eA 
  KOO24047.1 176 LSLASIHFLRNHYQEAT 192
                 679999*******9995 PP

  == domain 3  score: -1.3 bits;  conditional E-value: 6.1
       TPR_4   1 arallaLArallalGdldeA 20 
                 + a+l+L   + + G+  eA
  KOO24047.1 306 PEARLNLVIYHMHHGEVQEA 325
                 6799***9999999988887 PP

  == domain 4  score: 1.8 bits;  conditional E-value: 0.63
       TPR_4   7 LArallalGdldeArall 24 
                  A a +a+G + eA+ +l
  KOO24047.1 420 FAIAKAAAGKYKEAEPAL 437
                 58899*********9876 PP

  == domain 5  score: -0.1 bits;  conditional E-value: 2.5
       TPR_4   4 llaLArallalGdldeA 20 
                 + +LAr l   G + eA
  KOO24047.1 456 QMWLARCLVMNGKAREA 472
                 679*******9999998 PP

>> PPR  PPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.0       3.4   2.9e+03      12      30 ..      90     108 ..      87     109 .. 0.83
   2 ?   -1.5   0.0       4.7     4e+03      13      27 ..     185     199 ..     177     202 .. 0.77
   3 ?    3.5   0.0      0.12     1e+02      11      25 ..     317     331 ..     312     333 .. 0.86
   4 !    8.7   0.2    0.0027       2.3       8      27 ..     461     480 ..     459     481 .. 0.91

  Alignments for each domain:
  == domain 1  score: -1.1 bits;  conditional E-value: 3.4
         PPR  12 knGkleeAlelfkeMkekG 30 
                 + G++ +Al+ ++ ++++G
  KOO24047.1  90 HLGDYGKALDAYQNLLDSG 108
                 5799*****9999888777 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 4.7
         PPR  13 nGkleeAlelfkeMk 27 
                  + ++eA +++k+++
  KOO24047.1 185 RNHYQEATDIYKRLL 199
                 56799******9975 PP

  == domain 3  score: 3.5 bits;  conditional E-value: 0.12
         PPR  11 cknGkleeAlelfke 25 
                  ++G+++eA+el+k+
  KOO24047.1 317 MHHGEVQEAFELMKD 331
                 579*********986 PP

  == domain 4  score: 8.7 bits;  conditional E-value: 0.0027
         PPR   8 sgycknGkleeAlelfkeMk 27 
                 ++++ nGk +eA e++ +M+
  KOO24047.1 461 RCLVMNGKAREAWEIYLKME 480
                 7999***************7 PP

>> HrpB1_HrpK  Bacterial type III secretion protein (HrpB1_HrpK)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.4   0.0     0.016        14      57      93 ..      90     126 ..      78     156 .. 0.88
   2 ?    0.7   0.0      0.45   3.9e+02      52      91 ..     179     218 ..     171     224 .. 0.88
   3 !    7.5   0.0    0.0034       2.9      44      95 ..     305     356 ..     291     375 .. 0.79
   4 ?   -0.7   0.2       1.2   1.1e+03      56      94 ..     425     468 ..     386     496 .. 0.57

  Alignments for each domain:
  == domain 1  score: 5.4 bits;  conditional E-value: 0.016
  HrpB1_HrpK  57 ergrweeAlrlLreveaeasgtpyakaLlAlcLaalr 93 
                 + g++  Al + +++ ++ s+ p+    +A+cL+ ++
  KOO24047.1  90 HLGDYGKALDAYQNLLDSGSHDPMIHVFMACCLERMQ 126
                 56889999999**********************9765 PP

  == domain 2  score: 0.7 bits;  conditional E-value: 0.45
  HrpB1_HrpK  52 gvlliergrweeAlrlLreveaeasgtpyakaLlAlcLaa 91 
                 + ++  r++++eA  + + +  e++ + + +  +Alc + 
  KOO24047.1 179 ASIHFLRNHYQEATDIYKRLLLENRDFTALNVYVALCYYK 218
                 6788889**************9999999999999999876 PP

  == domain 3  score: 7.5 bits;  conditional E-value: 0.0034
  HrpB1_HrpK  44 vaeldllegvlliergrweeAlrlLreveaeasgtpyakaLlAlcLaalrDe 95 
                 v+e++l  ++ +++ g+++eA  l+++ve +++++ + k    l+  +  D+
  KOO24047.1 305 VPEARLNLVIYHMHHGEVQEAFELMKDVEPASPSEYILKGVTNLAVGQAMDS 356
                 57888888999*********************99999998888877666665 PP

  == domain 4  score: -0.7 bits;  conditional E-value: 1.2
  HrpB1_HrpK  56 iergrweeAlrlLreveaeasgtpyaka.....LlAlcLaalrD 94 
                  + g+++eA  +L  ++  +s +++ak       lA cL + + 
  KOO24047.1 425 AAAGKYKEAEPALLALQSGSSAEDLAKDyifqmWLARCLVMNGK 468
                 55667777777777777766666666642222125666655443 PP

>> TPR_12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.2   2.6    0.0035         3       8      69 ..      83     136 ..      78     139 .. 0.73
   2 ?    6.1   0.2     0.015        13      49      71 ..     176     198 ..     159     199 .. 0.87
   3 ?    1.2   0.7      0.53   4.5e+02       9      33 ..     212     236 ..     205     263 .. 0.62
   4 ?   -0.2   0.0       1.5   1.3e+03       8      69 ..     311     368 ..     305     369 .. 0.61
   5 ?    4.9   0.0     0.037        31      48      67 ..     417     436 ..     411     441 .. 0.77
   6 ?    1.6   0.0       0.4   3.4e+02      51      68 ..     459     476 ..     458     479 .. 0.92

  Alignments for each domain:
  == domain 1  score: 8.2 bits;  conditional E-value: 0.0035
      TPR_12   8 nlaavlrrlgrydeAlellekaleiarrllGpdhpltattlrnLgrlyralgryeeAlelle 69 
                  la + ++lg+y +Al+ ++  l+         h     +   ++ +++++  ++eA+e+ +
  KOO24047.1  83 WLAYAAFHLGDYGKALDAYQNLLDSG-----S-H--DPMIHVFMACCLERMQMHQEAEERAR 136
                 39999999***999999999997755.....2.4..44567777777777777777777665 PP

  == domain 2  score: 6.1 bits;  conditional E-value: 0.015
      TPR_12  49 rnLgrlyralgryeeAlelleea 71 
                   L+ +++++++y+eA +++++ 
  KOO24047.1 176 LSLASIHFLRNHYQEATDIYKRL 198
                 57999999999******999986 PP

  == domain 3  score: 1.2 bits;  conditional E-value: 0.53
      TPR_12   9 laavlrrlgrydeAlellekaleia 33 
                 +a+++++l  yd +le+l + l+++
  KOO24047.1 212 VALCYYKLDYYDVSLEILAAYLQAH 236
                 6777777777777777766655554 PP

  == domain 4  score: -0.2 bits;  conditional E-value: 1.5
      TPR_12   8 nlaavlrrlgrydeAlellekaleiarrllGpdhpltattlrnLgrlyralgryeeAlelle 69 
                 nl   +++ g+ +eA+el + +  +       ++ l   t  + g++ + +++++ A+++++
  KOO24047.1 311 NLVIYHMHHGEVQEAFELMKDVEPAS----PSEYILKGVTNLAVGQAMDSREHLKVAQQYFQ 368
                 55666666666777776666553332....34455666666667777777777777777775 PP

  == domain 5  score: 4.9 bits;  conditional E-value: 0.037
      TPR_12  48 lrnLgrlyralgryeeAlel 67 
                 l+n +++  a+g+y+eA+ +
  KOO24047.1 417 LYNFAIAKAAAGKYKEAEPA 436
                 77888888888888888765 PP

  == domain 6  score: 1.6 bits;  conditional E-value: 0.4
      TPR_12  51 LgrlyralgryeeAlell 68 
                 L+r++ + g+ +eA+e++
  KOO24047.1 459 LARCLVMNGKAREAWEIY 476
                 89**************99 PP

>> TPR_10  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.5   0.1      0.36   3.1e+02       7      26 ..      83     102 ..      81     109 .. 0.81
   2 ?    5.1   0.1     0.026        22       7      27 ..     177     197 ..     175     201 .. 0.83
   3 ?   -3.1   0.3       9.5   8.1e+03       4      23 ..     242     261 ..     240     263 .. 0.72
   4 ?    6.3   0.0     0.011       9.1       4      27 ..     308     331 ..     307     332 .. 0.90
   5 ?    3.3   0.0     0.097        82       5      23 ..     417     435 ..     415     440 .. 0.88
   6 ?   -1.7   0.0       3.5     3e+03      16      34 ..     524     542 ..     521     543 .. 0.83

  Alignments for each domain:
  == domain 1  score: 1.5 bits;  conditional E-value: 0.36
      TPR_10   7 NLanalrqrgrydeAealle 26 
                  La a +++g+y +A++ ++
  KOO24047.1  83 WLAYAAFHLGDYGKALDAYQ 102
                 58999999999999998776 PP

  == domain 2  score: 5.1 bits;  conditional E-value: 0.026
      TPR_10   7 NLanalrqrgrydeAeallee 27 
                  La +++ r+ y+eA +++++
  KOO24047.1 177 SLASIHFLRNHYQEATDIYKR 197
                 589999999999999999887 PP

  == domain 3  score: -3.1 bits;  conditional E-value: 9.5
      TPR_10   4 slnNLanalrqrgrydeAea 23 
                 +ln  a+  ++++++++Aea
  KOO24047.1 242 ALNLKACNQFRLYDGKAAEA 261
                 56666777788888888887 PP

  == domain 4  score: 6.3 bits;  conditional E-value: 0.011
      TPR_10   4 slnNLanalrqrgrydeAeallee 27 
                 ++ NL +++ + g+ +eA +l+++
  KOO24047.1 308 ARLNLVIYHMHHGEVQEAFELMKD 331
                 567******************987 PP

  == domain 5  score: 3.3 bits;  conditional E-value: 0.097
      TPR_10   5 lnNLanalrqrgrydeAea 23 
                 l N a+a  + g+y+eAe 
  KOO24047.1 417 LYNFAIAKAAAGKYKEAEP 435
                 6799*************96 PP

  == domain 6  score: -1.7 bits;  conditional E-value: 3.5
      TPR_10  16 grydeAealleealairrr 34 
                 g++ + + ++++++a++++
  KOO24047.1 524 GKRGACVGHFQKVIAMQEQ 542
                 7888888899******987 PP

>> PPR_2  PPR repeat family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.4   0.0     0.012        10      12      28 ..     315     331 ..     310     333 .. 0.86
   2 ?    4.3   0.1     0.056        48      13      30 ..     463     480 ..     459     483 .. 0.88

  Alignments for each domain:
  == domain 1  score: 6.4 bits;  conditional E-value: 0.012
       PPR_2  12 glckkgkveeAfklfne 28 
                 +++++g+v+eAf+l+++
  KOO24047.1 315 YHMHHGEVQEAFELMKD 331
                 89************987 PP

  == domain 2  score: 4.3 bits;  conditional E-value: 0.056
       PPR_2  13 lckkgkveeAfklfneMk 30 
                 l+ +gk +eA++++ +M+
  KOO24047.1 463 LVMNGKAREAWEIYLKME 480
                 6789**********9996 PP

>> TPR_1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.6   8.7e-05     0.074       7      26 ..      84     103 ..      81     106 .. 0.92
   2 ?    1.3   0.0      0.41   3.5e+02       7      22 ..     118     133 ..     113     133 .. 0.90
   3 ?    4.7   0.1     0.033        28       6      32 ..     177     203 ..     175     205 .. 0.85
   4 ?   -1.5   0.0         3   2.6e+03       7      22 ..     386     401 ..     385     406 .. 0.82
   5 ?    0.9   0.2      0.52   4.4e+02       6      23 ..     419     436 ..     415     437 .. 0.76
   6 ?   -2.1   0.2       4.8   4.1e+03       7      33 ..     492     518 ..     489     519 .. 0.78

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 8.7e-05
                 HHHHHHHTT-HHHHHHHHHH CS
       TPR_1   7 lGnayfklgkydeAleyyek 26 
                 l++a f+lg+y +Al++y+ 
  KOO24047.1  84 LAYAAFHLGDYGKALDAYQN 103
                 899***************96 PP

  == domain 2  score: 1.3 bits;  conditional E-value: 0.41
                 HHHHHHHTT-HHHHHH CS
       TPR_1   7 lGnayfklgkydeAle 22 
                 ++ ++ ++++++eA+e
  KOO24047.1 118 MACCLERMQMHQEAEE 133
                 799***********97 PP

  == domain 3  score: 4.7 bits;  conditional E-value: 0.033
                 HHHHHHHHTT-HHHHHHHHHHHHHHST CS
       TPR_1   6 nlGnayfklgkydeAleyyekALelnP 32 
                  l+ ++f  + y+eA + y++ L  n 
  KOO24047.1 177 SLASIHFLRNHYQEATDIYKRLLLENR 203
                 5899***************99776665 PP

  == domain 4  score: -1.5 bits;  conditional E-value: 3
                 HHHHHHHTT-HHHHHH CS
       TPR_1   7 lGnayfklgkydeAle 22 
                 ++ ++f l ++d+ l 
  KOO24047.1 386 MASCFFILRQFDDVLI 401
                 688********98765 PP

  == domain 5  score: 0.9 bits;  conditional E-value: 0.52
                 HHHHHHHHTT-HHHHHHH CS
       TPR_1   6 nlGnayfklgkydeAley 23 
                 n + a    gky+eA+ +
  KOO24047.1 419 NFAIAKAAAGKYKEAEPA 436
                 556677789******875 PP

  == domain 6  score: -2.1 bits;  conditional E-value: 4.8
                 HHHHHHHTT-HHHHHHHHHHHHHHSTT CS
       TPR_1   7 lGnayfklgkydeAleyyekALelnPn 33 
                 l+n +++ g +  A ++++   +l+Pn
  KOO24047.1 492 LANDCYRAGAFLYAAKAFDTLERLDPN 518
                 778888888888888888887788887 PP

>> DUF3768  Protein of unknown function (DUF3768)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   0.00018      0.16      35      63 ..     202     230 ..     188     239 .. 0.91

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 0.00018
     DUF3768  35 ehdfGavelkgekvfwKiDyydrelefgs 63 
                 ++df a+++    +++K+Dyyd +le+ +
  KOO24047.1 202 NRDFTALNVYVALCYYKLDYYDVSLEILA 230
                 79********************9998765 PP

>> TPR_6  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.2   7.4e-05     0.063       4      28 ..      82     106 ..      81     107 .. 0.94
   2 ?   -1.8   0.2       7.6   6.5e+03       6      22 ..     118     134 ..     118     137 .. 0.77
   3 ?    2.2   0.0       0.4   3.4e+02       6      27 ..     178     199 ..     175     204 .. 0.85
   4 ?    7.2   0.1      0.01       8.7       5      33 .]     211     239 ..     207     239 .. 0.92
   5 ?    0.6   0.0       1.3   1.1e+03       4      19 ..     457     472 ..     456     479 .. 0.81
   6 ?   -1.7   0.0       7.3   6.3e+03      17      26 ..     506     515 ..     487     518 .. 0.58

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 7.4e-05
                 HHHHHHHHHHHHHHHHHHHHHHHHH CS
       TPR_6   4 yklalsyrklgdtdkAlealerlik 28 
                 ++la++ + lgd+ kAl+a+++l++
  KOO24047.1  82 LWLAYAAFHLGDYGKALDAYQNLLD 106
                 89*******99************97 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 7.6
                 HHHHHHHHHHHHHHHHH CS
       TPR_6   6 lalsyrklgdtdkAlea 22 
                 +a ++++++ +++A e 
  KOO24047.1 118 MACCLERMQMHQEAEER 134
                 68899998799999765 PP

  == domain 3  score: 2.2 bits;  conditional E-value: 0.4
                 HHHHHHHHHHHHHHHHHHHHHH CS
       TPR_6   6 lalsyrklgdtdkAlealerli 27 
                 la  ++  + +++A ++++rl+
  KOO24047.1 178 LASIHFLRNHYQEATDIYKRLL 199
                 788899988***********98 PP

  == domain 4  score: 7.2 bits;  conditional E-value: 0.01
                 HHHHHHHHHHHHHHHHHHHHHHHHH-TT- CS
       TPR_6   5 klalsyrklgdtdkAlealerlikeYPdS 33 
                 + al+y+kl+ +d +le+l   ++ +PdS
  KOO24047.1 211 YVALCYYKLDYYDVSLEILAAYLQAHPDS 239
                 679******8889***************9 PP

  == domain 5  score: 0.6 bits;  conditional E-value: 1.3
                 HHHHHHHHHHHHHHHH CS
       TPR_6   4 yklalsyrklgdtdkA 19 
                 ++la+++ + g++++A
  KOO24047.1 457 MWLARCLVMNGKAREA 472
                 699*****98899998 PP

  == domain 6  score: -1.7 bits;  conditional E-value: 7.3
                 HHHHHHHHHH CS
       TPR_6  17 dkAlealerl 26 
                 +kA ++lerl
  KOO24047.1 506 AKAFDTLERL 515
                 2555555554 PP

>> Fis1_TPR_C  Fis1 C-terminal tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.0   0.1     0.015        12       7      29 ..      84     106 ..      82     110 .. 0.93
   2 ?   -2.9   0.1       8.8   7.5e+03      16      29 ..     187     200 ..     182     205 .. 0.83
   3 ?   13.3   1.4   7.4e-05     0.064       6      42 ..     211     247 ..     210     250 .. 0.95
   4 ?    4.0   0.2     0.062        53       3      21 ..     416     434 ..     415     440 .. 0.89
   5 ?   -1.1   0.0       2.5   2.1e+03       7      32 ..     492     517 ..     468     519 .. 0.75
   6 ?   -0.5   0.1       1.6   1.4e+03      18      47 ..     543     571 ..     538     577 .. 0.76

  Alignments for each domain:
  == domain 1  score: 6.0 bits;  conditional E-value: 0.015
                 HHHHHHHHT-HHHHHHHHHHHHH CS
  Fis1_TPR_C   7 lAlGhyklgeYseArryvdalLe 29 
                 lA++ + lg+Y +A+   + lL 
  KOO24047.1  84 LAYAAFHLGDYGKALDAYQNLLD 106
                 9****************999995 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 8.8
                 -HHHHHHHHHHHHH CS
  Fis1_TPR_C  16 eYseArryvdalLe 29 
                  Y+eA    ++lL 
  KOO24047.1 187 HYQEATDIYKRLLL 200
                 59999999999985 PP

  == domain 3  score: 13.3 bits;  conditional E-value: 7.4e-05
                 HHHHHHHHHT-HHHHHHHHHHHHHHTTS-HHHHHHHH CS
  Fis1_TPR_C   6 ylAlGhyklgeYseArryvdalLeiEPenrQaqsLke 42 
                 y+Al +ykl  Y+ +++ + a L+ +P+   a++Lk+
  KOO24047.1 211 YVALCYYKLDYYDVSLEILAAYLQAHPDSALALNLKA 247
                 99**************************999999985 PP

  == domain 4  score: 4.0 bits;  conditional E-value: 0.062
                 HHHHHHHHHHHHT-HHHHH CS
  Fis1_TPR_C   3 clYylAlGhyklgeYseAr 21 
                 +lY  A++++  g+Y+eA 
  KOO24047.1 416 FLYNFAIAKAAAGKYKEAE 434
                 69***************95 PP

  == domain 5  score: -1.1 bits;  conditional E-value: 2.5
                 HHHHHHHHT-HHHHHHHHHHHHHHTT CS
  Fis1_TPR_C   7 lAlGhyklgeYseArryvdalLeiEP 32 
                 lA  +y+ g +  A +  d+l +++P
  KOO24047.1 492 LANDCYRAGAFLYAAKAFDTLERLDP 517
                 55567888888888888888777766 PP

  == domain 6  score: -0.5 bits;  conditional E-value: 1.6
                 HHHHHHHHHHHHHTTS-HHHHHHHHHHHHH CS
  Fis1_TPR_C  18 seArryvdalLeiEPenrQaqsLkeliedk 47 
                 ++++r +  +L+   +n Q++ L +++++ 
  KOO24047.1 543 KNSLREILGMLKSS-RNPQVEYLARVMKKW 571
                 66777777778777.9*******9999985 PP

>> TPR_8  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.6   0.2    0.0058         5       5      28 ..      82     105 ..      79     107 .. 0.87
   2 ?   -1.5   0.0       4.9   4.2e+03       6      22 ..     117     133 ..     114     137 .. 0.85
   3 ?    3.2   0.0      0.15   1.3e+02       6      29 ..     177     200 ..     175     205 .. 0.86
   4 ?   -0.7   0.1       2.6   2.2e+03       8      29 ..     213     234 ..     212     238 .. 0.81
   5 ?    1.0   0.1      0.75   6.4e+02       4      25 ..     417     438 ..     414     442 .. 0.82

  Alignments for each domain:
  == domain 1  score: 7.6 bits;  conditional E-value: 0.0058
                 HHHHHHHHHTT-HHHHHHHHHHHH CS
       TPR_8   5 ynlgsiylklgdyeeAkeyyekal 28 
                 ++l+++ + lgdy +A  +y+  l
  KOO24047.1  82 LWLAYAAFHLGDYGKALDAYQNLL 105
                 689****************98665 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 4.9
                 HHHHHHHHTT-HHHHHH CS
       TPR_8   6 nlgsiylklgdyeeAke 22 
                  ++++++ ++ ++eA+e
  KOO24047.1 117 FMACCLERMQMHQEAEE 133
                 6799999*******987 PP

  == domain 3  score: 3.2 bits;  conditional E-value: 0.15
                 HHHHHHHHTT-HHHHHHHHHHHHH CS
       TPR_8   6 nlgsiylklgdyeeAkeyyekale 29 
                  l+si++  + y+eA   y++ l 
  KOO24047.1 177 SLASIHFLRNHYQEATDIYKRLLL 200
                 599****************99885 PP

  == domain 4  score: -0.7 bits;  conditional E-value: 2.6
                 HHHHHHTT-HHHHHHHHHHHHH CS
       TPR_8   8 gsiylklgdyeeAkeyyekale 29 
                 +++y kl  y+ + e +  +l+
  KOO24047.1 213 ALCYYKLDYYDVSLEILAAYLQ 234
                 6899******999998877776 PP

  == domain 5  score: 1.0 bits;  conditional E-value: 0.75
                 HHHHHHHHHHTT-HHHHHHHHH CS
       TPR_8   4 yynlgsiylklgdyeeAkeyye 25 
                 +yn + +    g+y+eA+ ++ 
  KOO24047.1 417 LYNFAIAKAAAGKYKEAEPALL 438
                 78888888899******99886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (579 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       543  (0.0302861); expected 358.6 (0.02)
Passed bias filter:                      413  (0.0230353); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                        21  (0.00117129); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              21  [number of targets reported over threshold]
# CPU time: 0.65u 0.31s 00:00:00.96 Elapsed: 00:00:00.53
# Mc/sec: 3257.47
//
Query:       KOO24048.1  [L=223]
Description: ADP-ribosylation factor-like protein 2-binding protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.8e-24   85.0   0.8    5.4e-24   84.5   0.8    1.1  1  ARL2_Bind_BART  The ARF-like 2 binding protein BART


Domain annotation for each model (and alignments):
>> ARL2_Bind_BART  The ARF-like 2 binding protein BART
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   84.5   0.8     3e-28   5.4e-24       2     112 ..      49     161 ..      48     164 .. 0.93

  Alignments for each domain:
  == domain 1  score: 84.5 bits;  conditional E-value: 3e-28
                     HHHHHHHHHHHTS-HHHHHHHHHHHHHHHHTT--SS-SSTTHHHHHHHHHHHHHHHHHH.HHTT-.SSS--THHHHH....SS-GGSSHHHHHHH CS
  ARL2_Bind_BART   2 edwivesleeflaspefkspvqeFidencivFddeeenkleytdihkeYkklveklles.lleei.gismeeflealekslsekkevakkvfeql 94 
                     ++ i+++le +l++++f++ v+ F +e+c++F+d++enkl+yt+++++Y  +ve+++e+ l  ++ +++m  f  +l++++++++      +e+l
      KOO24048.1  49 FSLILQELEVMLMDEAFNERVDAFAEEHCHEFEDSDENKLIYTTLFNDYSAMVETFIEErLGASVqSFDMAGFCATLAERAKANDGDLPPPLEML 143
                     567999*****************************************************9999999***********777777777777888*** PP

                     HGGG-HHHHHHHHHHHHH CS
  ARL2_Bind_BART  95 laadDFeaFkkmMvkrnk 112
                      +++DF+aFk++M++ ++
      KOO24048.1 144 HSMTDFDAFKELMLSAKQ 161
                     **************9886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (223 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       364  (0.0203023); expected 358.6 (0.02)
Passed bias filter:                      331  (0.0184617); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.24s 00:00:00.69 Elapsed: 00:00:00.42
# Mc/sec: 1592.83
//
Query:       KOO24049.1  [L=523]
Description: erythromycin esterase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    5.8e-84  282.8   1.3    5.8e-82  276.3   1.3    2.1  1  Erythro_esteras  Erythromycin esterase


Domain annotation for each model (and alignments):
>> Erythro_esteras  Erythromycin esterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  276.3   1.3   3.2e-86   5.8e-82       1     344 []      73     517 ..      73     517 .. 0.90

  Alignments for each domain:
  == domain 1  score: 276.3 bits;  conditional E-value: 3.2e-86
                      HHHC---EEEEEEEHHHHHHHHHHHHHS-S-GGGT..........S-CCC-CHHHHHHHHHHHHHHHSTT-SS-.................... CS
  Erythro_esteras   1 veehGfrtvalEadwpdalrvdryvrggtgdaeea.......krfptwmWrneevlelveWlReyNagrpkker.................... 67 
                      ve +Gf++v +E+dwp+a+rv ry++++ + +++a        +fp+wmW+ne ++ lve lR++N++ +++                      
       KOO24049.1  73 VETKGFSVVLIEGDWPAAYRVSRYISSEGSMDRSAhealagfAGFPSWMWKNERFASLVEELRAHNERVRAEGTeatatlsalgdlraagasee 166
                      899**********************88774444445789***99**********************7665555579****************** PP

                      .....................-EEEEEE-S---HHHHHHHHHHHHCHCCCCHHHHHHHCCHGGCS............TSSCCCCCHHHHHHHHH CS
  Erythro_esteras  68 .....................vrfyGlDlqslresldavldyLakvdpelagaareryaclapla.dp....raar.saeaaelrscedevval 134
                                           v +yG+D +s+++s++av+++L+ vdp++a+  r+rya ++p++ d     r++   + a++ ++ +++v  +
       KOO24049.1 167 qlevmgftkaaiaaasegrpeVVLYGMDTYSVNASARAVIEFLEIVDPDAAALTRSRYAVFEPFGdDMkeygRQVTcGELASRAEEIKADVASV 260
                      ****************************************************************6455666644447778899*********** PP

                      HHHCCHGGG.....GG...TSHHHHHHHHHHHHHHHHHHHC.......CSSSSSCHHHHHHHHHHHHHHHHHHHH........HHSSEEEEEEH CS
  Erythro_esteras 135 lkellakreeyaaedg...eaeeffsaeqnarlvknaeryyra.....gdeeswnlrllalRDrhMaenleallehe......argkivvwAHN 214
                      l+el++++    +  +   ++ e  +aeqna++v+n e+y+r      g+ + wnl     RD++M+++ ++l+e+       a  kiv+wAHN
       KOO24049.1 261 LTELQQNARA--S-YSlllSPAELLNAEQNAQVVVNGEAYFRGlyesiGSVDTWNL-----RDQAMVQTCLRLVEYCramnggATPKIVLWAHN 346
                      ***9999872..2.22357889**************************99******.....**************659999*9778******** PP

                      HHHSSS-STTTT-S..S-HHHHHHHHHGGG.......EEEEEEEEEEEEEEEC-.......EEEE----TTSHHHHHHC............... CS
  Erythro_esteras 215 sHigdaratdmgkerglnaGqllrerlgde.......yvaiGftfgtgtvaaasewgepmevmtvrppppgslEallha............... 286
                      sH+gda+at+m+ ++++n+Gq lr+++g++       +++ Gf+++ gtv+aa+ewg+p++++++ +++pgs+ +l+h+               
       KOO24049.1 347 SHVGDASATSMAVREEWNLGQMLRQTFGADcnadsggVFLCGFGTYAGTVTAAEEWGRPPQTFELADAEPGSISDLMHKvlrvvsererlegga 440
                      ************8866************9766666778*****************************************999999999999988 PP

                      .....SS-SEEEEEG...-..........CHHHHHHEE............EEE---SB-BTTSHHHH-SEEEEEEEE CS
  Erythro_esteras 287 .....agppdflldl...r.........neelrewleeprleraiGv..rpeterqshyveaslaeqfDalifvdet 344
                           a  ++ ll l   +         ++++r++l+epr++ra+Gv  r++te+ shyveasla+qfDa i+vd+t
       KOO24049.1 441 palsaAPLNALLLVLkgvStsdpehnevQQAARAVLREPRRQRAVGVcyRKATEASSHYVEASLATQFDAWIHVDRT 517
                      888765566666666555155667788999999999***************************************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (523 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       628  (0.0350271); expected 358.6 (0.02)
Passed bias filter:                      517  (0.028836); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.56u 0.29s 00:00:00.85 Elapsed: 00:00:00.44
# Mc/sec: 3537.22
//
Query:       KOO24050.1  [L=162]
Description: comm domain-containing protein 7 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    2.1e-12   47.0   0.0    2.8e-12   46.6   0.0    1.2  1  COMM_domain  COMM domain


Domain annotation for each model (and alignments):
>> COMM_domain  COMM domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.6   0.0   1.6e-16   2.8e-12       2      68 ..      95     160 ..      94     162 .] 0.95

  Alignments for each domain:
  == domain 1  score: 46.6 bits;  conditional E-value: 1.6e-16
  COMM_domain   2 pqLvdldWrldvqlsssslskvneptalleLklqngsgnsenvtlelskeqLqeLlneLeeiqkqle 68 
                   qL d+dW + v  sss+ + + + +++l+L +q ++g +e v+ el+ + ++++l++Le +++ le
   KOO24050.1  95 LQLLDVDWSFGVSASSSEHQAMGTTFVQLRLSTQGQNG-GEFVHTELDLARFYDFLHQLELAKARLE 160
                  69********************************9887.999*********************9987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (162 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       387  (0.0215851); expected 358.6 (0.02)
Passed bias filter:                      318  (0.0177366); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.25s 00:00:00.64 Elapsed: 00:00:00.40
# Mc/sec: 1204.59
//
Query:       KOO24051.1  [L=382]
Description: 3-oxoacyl-(acyl-carrier-protein) synthase iii (beta-ketoacyl-acp synthase iii)(kas iii) [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      4e-39  132.7   0.3    8.8e-39  131.6   0.1    1.8  2  ACP_syn_III_C    3-Oxoacyl-[acyl-carrier-protein (ACP)] synth
    1.2e-30  105.2   0.4    1.2e-30  105.2   0.4    3.1  4  ACP_syn_III      3-Oxoacyl-[acyl-carrier-protein (ACP)] synth
    2.4e-07   30.4   0.6    3.1e-05   23.5   0.0    2.5  3  Thiolase_N       Thiolase, N-terminal domain
    0.00056   19.6   5.3       0.52    9.8   0.3    4.1  4  ketoacyl-synt    Beta-ketoacyl synthase, N-terminal domain
     0.0034   16.7   0.0      0.033   13.5   0.0    2.0  2  FAE1_CUT1_RppA   FAE1/Type III polyketide synthase-like prote
     0.0045   16.6   0.6      0.016   14.9   0.2    2.2  2  Thiolase_C       Thiolase, C-terminal domain
     0.0053   16.8   0.0     0.0093   16.0   0.0    1.3  1  Chal_sti_synt_C  Chalcone and stilbene synthases, C-terminal 
  ------ inclusion threshold ------
       0.06   13.4   0.0         15    5.6   0.0    2.6  2  Ketoacyl-synt_C  Beta-ketoacyl synthase, C-terminal domain


Domain annotation for each model (and alignments):
>> ACP_syn_III_C  3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.7   0.0       6.4   1.4e+04      69      81 ..     199     211 ..     185     213 .. 0.77
   2 !  131.6   0.1   3.9e-42   8.8e-39       1      90 []     290     379 ..     290     379 .. 0.99

  Alignments for each domain:
  == domain 1  score: -3.7 bits;  conditional E-value: 6.4
                    T-EEEEEEEETTT CS
  ACP_syn_III_C  69 gdlvllvgfGaGl 81 
                     ++++l+g GaG 
     KOO24051.1 199 RNTCVLFGDGAGA 211
                    5678999999996 PP

  == domain 2  score: 131.6 bits;  conditional E-value: 3.9e-42
                    HHHTT--GGG-SEEEE-SSSHHHHHHHHHHHT--GGGB--THHHH-B-GGGHHHHHHHHHHHTTSS-TT-EEEEEEEETTTEEEEEEEE- CS
  ACP_syn_III_C   1 LekagltpedidalvphqanlriidavakklglpeekvvvnldeyGntsaasiplaLdeaveegklkpgdlvllvgfGaGltwgaallrw 90 
                    L++aglt++d+d+l++hqan+ri++ vakklg+p+ekv++nl+eyGntsa siplaL+eav+ gk+kpgd ++ +gfGaGl+wg+a++rw
     KOO24051.1 290 LDNAGLTADDVDWLLLHQANIRIMETVAKKLGIPMEKVITNLAEYGNTSAGSIPLALNEAVKAGKVKPGDVIACAGFGAGLSWGSAIIRW 379
                    789**************************************************************************************9 PP

>> ACP_syn_III  3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.1       3.8   8.6e+03       6      13 ..      19      26 ..      18      26 .. 0.84
   2 ?   -2.1   0.1       1.6   3.5e+03      51      58 ..     135     142 ..     129     145 .. 0.87
   3 !  105.2   0.4   5.3e-34   1.2e-30       1      80 []     154     234 ..     154     234 .. 0.95
   4 ?    1.8   0.0     0.095   2.1e+02       6      22 ..     362     378 ..     360     381 .. 0.90

  Alignments for each domain:
  == domain 1  score: -3.3 bits;  conditional E-value: 3.8
                 GGGHHHHH CS
  ACP_syn_III  6 aCsgfvya 13
                  C+gf+ a
   KOO24051.1 19 SCAGFLLA 26
                 6****986 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 1.6
                  TB-EEEEE CS
  ACP_syn_III  51 lfGDGAgA 58 
                  lfGD+A  
   KOO24051.1 135 LFGDAAFV 142
                  8****975 PP

  == domain 3  score: 105.2 bits;  conditional E-value: 5.3e-34
                  EEEE-GGGHHHHHHHHHHHHHHTTS-SEEEEEEEEEGGGCS-TTTHHHHTTB-EEEEEEEEEEE.SSSSCEEEEEEEEE-G CS
  ACP_syn_III   1 fDlnaaCsgfvyalsvAdaliesgaakrvLvigaetlskilDwkdrstavlfGDGAgAvvleas.eeegarildselgsdg 80 
                  fDl+aaCsgf++++++A++++ +ga+k+++viga++ls+++Dw+dr+t+vlfGDGAgAvvl+++   + a+il++e++s+g
   KOO24051.1 154 FDLTAACSGFLFGINTASQFLHNGAYKTAIVIGADALSRWVDWTDRNTCVLFGDGAGAVVLQQTaAGQPAGILGYEMHSNG 234
                  9***************************************************************9555558*******997 PP

  == domain 4  score: 1.8 bits;  conditional E-value: 0.095
                  GGGHHHHHHHHHHHHHH CS
  ACP_syn_III   6 aCsgfvyalsvAdalie 22 
                  aC+gf ++ls  +a+i+
   KOO24051.1 362 ACAGFGAGLSWGSAIIR 378
                  8*********9999987 PP

>> Thiolase_N  Thiolase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.5   0.0   1.4e-08   3.1e-05       8     117 ..      85     192 ..      83     201 .. 0.83
   2 ?   -2.3   0.0         1   2.3e+03     248     258 ..     206     216 ..     197     218 .. 0.78
   3 !    4.7   0.1    0.0075        17       3      96 ..     259     346 ..     257     366 .. 0.71

  Alignments for each domain:
  == domain 1  score: 23.5 bits;  conditional E-value: 1.4e-08
                 EE--EETTSTTTTS-HHHHHHHHHHHHHHHHTS-GGGCCEEEEEHSSCT.TSTSCHHHHHHHHTTS-TTSEEEEEEHGGGHHHHHHHHHHHHHHTTSHS CS
  Thiolase_N   8 rtpigkfggslkdlsaeeLlaealkallekagvdpeevdevivGnvlqa.gegqniarqaalkagipeevpavtvnkvcsSglkavalaaqsiaagead 105
                 rt i   +    d    +L+++a+k++le+agvdp ev  vi+++       g   a  +a  +g   +++a  ++ +cs  l ++++a q +  g+++
  KOO24051.1  85 RTGISCRHLIAPDQGLADLASKAAKEALEHAGVDPLEVGLVIMATSSPDdLFG--DAAFVARSVGA-TNAVAFDLTAACSGFLFGINTASQFLHNGAYK 180
                 55555555566678889**************************9987664333..34556666777.778899************************** PP

                 EEEEEEEEESTT CS
  Thiolase_N 106 vvvagGvEsmsn 117
                  ++++G+  +s+
  KOO24051.1 181 TAIVIGADALSR 192
                 *******99996 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 1
                 EEEEEEEEEEE CS
  Thiolase_N 248 sDGaaavllms 258
                  DGa+av+l +
  KOO24051.1 206 GDGAGAVVLQQ 216
                 6*******975 PP

  == domain 3  score: 4.7 bits;  conditional E-value: 0.0075
                 EEEEEEE--EETTSTTTTS-HHHHHHHHHHHHHHHHTS-GGGCCEEEEEHSSCTTSTSCHHHHHHHHTTS-TTSEEEEEEHGGGHHHHHHHHHH CS
  Thiolase_N   3 ivsaartpigkfggslkdlsaeeLlaealkallekagvdpeevdevivGnvlqagegqniarqaalkagipeevpavtvnkvcsSglkavalaa 96 
                 + ++a tpi   +g      a+    e+lk++l++ag+++++vd + + +     ++  i+  +a k+gip e + + + +    ++ ++ la 
  KOO24051.1 259 VTKGAYTPIAM-NGKEVYKFATTCVPEVLKEALDNAGLTADDVDWLLLHQ-----ANIRIMETVAKKLGIPMEKVITNLAEYGNTSAGSIPLAL 346
                 55677788877.666666777888899*****************987644.....455577778888888887777777666666666665554 PP

>> ketoacyl-synt  Beta-ketoacyl synthase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.8   0.0    0.0038       8.6      89     109 ..     101     121 ..      59     135 .. 0.77
   2 !    9.8   0.3   0.00023      0.52     158     208 ..     142     193 ..     137     202 .. 0.81
   3 ?    1.7   0.1      0.07   1.6e+02     237     250 ..     204     217 ..     197     219 .. 0.85
   4 ?    1.3   0.0     0.092   2.1e+02      91     110 ..     281     300 ..     240     354 .. 0.80

  Alignments for each domain:
  == domain 1  score: 5.8 bits;  conditional E-value: 0.0038
                    HHHHHHHHHHHHHHHTS-HHT CS
  ketoacyl-synt  89 qrllleaawealedagltpee 109
                    + l+ +aa+eale+ag++p e
     KOO24051.1 101 ADLASKAAKEALEHAGVDPLE 121
                    568899************944 PP

  == domain 2  score: 9.8 bits;  conditional E-value: 0.00023
                    HHHHHT--.SSEEEEESGGGHHHHHHHHHHHHHHTTS-SEEEEEEEE---SH CS
  ketoacyl-synt 158 isyalglr.GpsvtvdtACsSslvavhaavqslrsgeadvalaGGvellltp 208
                    ++ ++g++ ++++ +++ACs  l  ++ a q l++g  ++a++ G+++l  +
     KOO24051.1 142 VARSVGATnAVAFDLTAACSGFLFGINTASQFLHNGAYKTAIVIGADALSRW 193
                    55555543267788999**999************************987665 PP

  == domain 3  score: 1.7 bits;  conditional E-value: 0.07
                    -BB-EEEEEEEEEC CS
  ketoacyl-synt 237 vlGEGvGavvLkrl 250
                     +G+G+GavvL++ 
     KOO24051.1 204 LFGDGAGAVVLQQT 217
                    68*********975 PP

  == domain 4  score: 1.3 bits;  conditional E-value: 0.092
                    HHHHHHHHHHHHHTS-HHTC CS
  ketoacyl-synt  91 llleaawealedagltpeel 110
                     + e+ +eal +aglt++++
     KOO24051.1 281 CVPEVLKEALDNAGLTADDV 300
                    556899**********9987 PP

>> FAE1_CUT1_RppA  FAE1/Type III polyketide synthase-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.5   0.0   1.5e-05     0.033      89     205 ..     106     216 ..      92     224 .. 0.79
   2 ?    0.8   0.0      0.11   2.4e+02      61     110 ..     253     305 ..     249     352 .. 0.64

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 1.5e-05
  FAE1_CUT1_RppA  89 gavdellaktkvspkdidilvvncslfsptPslsa.mvvnryklredvksynLsgmGCsAglisidlaknllqvhkntlalvvstEnitlnwYvG 182
                     +a +e l++++v+p +++++++++s  sp+  + +   v r    ++  +++L++  Cs  l  i+ a+++l+    ++a+v+  ++++  w   
      KOO24051.1 106 KAAKEALEHAGVDPLEVGLVIMATS--SPDDLFGDaAFVARSVGATNAVAFDLTA-ACSGFLFGINTASQFLHNGAYKTAIVIGADALSR-WVDW 196
                     667888999*************999..56666653145666666788889****9.8****************************99985.5555 PP

  FAE1_CUT1_RppA 183 nersmllanclFRvGgaavllsn 205
                     ++r+      lF  G+ av+l +
      KOO24051.1 197 TDRNT---CVLFGDGAGAVVLQQ 216
                     66654...347777777777765 PP

  == domain 2  score: 0.8 bits;  conditional E-value: 0.11
  FAE1_CUT1_RppA  61 tyvPravlelpekktl...aeareEaeevlfgavdellaktkvspkdidilvv 110
                     t +P++v+++  ++     +e  + a +++ ++++e l +++++++d+d l+ 
      KOO24051.1 253 TTIPATVTKGAYTPIAmngKEVYKFATTCVPEVLKEALDNAGLTADDVDWLLL 305
                     667777777666544300033334445555566666667779*******9875 PP

>> Thiolase_C  Thiolase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.0         1   2.3e+03      26      44 ..     106     124 ..      95     128 .. 0.77
   2 !   14.9   0.2   7.1e-06     0.016      27      70 ..     285     328 ..     260     372 .. 0.84

  Alignments for each domain:
  == domain 1  score: -1.8 bits;  conditional E-value: 1
                 HHHHHHHHHHT--GGGESE CS
  Thiolase_C  26 yaikkvlkkagltvedidl 44 
                  a+k++l++ag++  ++ l
  KOO24051.1 106 KAAKEALEHAGVDPLEVGL 124
                 6889999999988776665 PP

  == domain 2  score: 14.9 bits;  conditional E-value: 7.1e-06
                 HHHHHHHHHT--GGGESEEEE--SBHHHHHHHHHHHT--GGGBS CS
  Thiolase_C  27 aikkvlkkagltvedidlfEinEAFaaqaLavakaldldlekvN 70 
                 + k++l++aglt +d+d + ++ A    + +vak+l++ +ekv 
  KOO24051.1 285 VLKEALDNAGLTADDVDWLLLHQANIRIMETVAKKLGIPMEKVI 328
                 5789************************************9984 PP

>> Chal_sti_synt_C  Chalcone and stilbene synthases, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.0   4.2e-06    0.0093      36     138 ..     276     374 ..     267     378 .. 0.74

  Alignments for each domain:
  == domain 1  score: 16.0 bits;  conditional E-value: 4.2e-06
  Chal_sti_synt_C  36 ekieenieeflkklleklGieefndlfwi.vhPGGpaildrleaklklekekleasrkvlseyGnvssatvlyvldelrd.kelkkklattgeg 127
                      +     + e+lk++l+++G +  +d+ w+ +h     i++++ +kl++  ek+ +    l eyGn s+ ++   l+e  +  ++k +   +   
       KOO24051.1 276 KFATTCVPEVLKEALDNAGLT-ADDVDWLlLHQANIRIMETVAKKLGIPMEKVIT---NLAEYGNTSAGSIPLALNEAVKaGKVKPGDVIA--C 363
                      5556678899*********97.47888862799999************9999864...69***********88887654404455444444..4 PP

  Chal_sti_synt_C 128 kewGlllafGP 138
                        +G +l++G 
       KOO24051.1 364 AGFGAGLSWGS 374
                      45566666554 PP

>> Ketoacyl-synt_C  Beta-ketoacyl synthase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.6   0.0    0.0068        15      26      49 ..     104     127 ..      84     133 .. 0.77
   2 ?    5.0   0.0     0.011        24      28      50 ..     284     306 ..     261     323 .. 0.87

  Alignments for each domain:
  == domain 1  score: 5.6 bits;  conditional E-value: 0.0068
                      HHHHHHHHHHHHT--GGGEEEEE- CS
  Ketoacyl-synt_C  26 qaraiekalaeagvdpedvdyvea 49 
                      + +a ++al+ agvdp +v++v +
       KOO24051.1 104 ASKAAKEALEHAGVDPLEVGLVIM 127
                      36889**************99865 PP

  == domain 2  score: 5.0 bits;  conditional E-value: 0.011
                      HHHHHHHHHHT--GGGEEEEE-S CS
  Ketoacyl-synt_C  28 raiekalaeagvdpedvdyveah 50 
                      +++++al++ag++++dvd +  h
       KOO24051.1 284 EVLKEALDNAGLTADDVDWLLLH 306
                      679***************98777 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (382 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       443  (0.0247086); expected 358.6 (0.02)
Passed bias filter:                      382  (0.0213063); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.48u 0.28s 00:00:00.76 Elapsed: 00:00:00.42
# Mc/sec: 2740.18
//
Query:       KOO24052.1  [L=112]
Description: hypothetical protein Ctob_004089 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.4e-05   23.9   0.0      5e-05   23.7   0.0    1.1  1  RAMA      Restriction Enzyme Adenine Methylase Associated


Domain annotation for each model (and alignments):
>> RAMA  Restriction Enzyme Adenine Methylase Associated
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.7   0.0   2.8e-09     5e-05      26      92 ..      35     111 ..       6     112 .] 0.76

  Alignments for each domain:
  == domain 1  score: 23.7 bits;  conditional E-value: 2.8e-09
        RAMA  26 tlkdLleagllepGekllieykgr...thkAdlladGkIk......gqe...fgspsaaakalvGnpsgnGWaswkykg 92 
                 +l  +l++g++ pG+++l ++ gr      Adll++G I+      g      ++p  + +a+ G +  nG + ++y+g
  KOO24052.1  35 SLVEMLASGIVLPGTNVL-STAGRagrDAFADLLPSGLIRfqptdgG-PiqlLRTPAMFVRAAAGTSCANGLRQVRYDG 111
                 455679************.66664333667**********7666642.157799999999999999999***9999987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (112 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       145  (0.00808746); expected 358.6 (0.02)
Passed bias filter:                      133  (0.00741815); expected 358.6 (0.02)
Passed Vit filter:                        10  (0.000557756); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.23s 00:00:00.59 Elapsed: 00:00:00.38
# Mc/sec: 883.32
//
Query:       KOO24053.1  [L=163]
Description: endoribonuclease l-psp [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.2e-19   69.6   0.0    2.9e-19   69.3   0.0    1.1  1  Ribonuc_L-PSP  Endoribonuclease L-PSP


Domain annotation for each model (and alignments):
>> Ribonuc_L-PSP  Endoribonuclease L-PSP
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.3   0.0   1.6e-23   2.9e-19      14     120 ..      48     162 ..      41     163 .] 0.93

  Alignments for each domain:
  == domain 1  score: 69.3 bits;  conditional E-value: 1.6e-23
                    EEEETTEEEEEEE-SB-T.......TTSCB.-SSHHHHHHHHHHHHHHHHHHTT--GGGEEEEEEEESSGGG..HHHHHHHHHHHSSSSTS--EEE CS
  Ribonuc_L-PSP  14 avkagnlvyvsGqlpldp.......etgelvegdveeqtrqalenlkavLaaagaslsdvVkvtvFladied..faevnevyaeafdelkeaPars 100
                     ++ ++++yvsG+++l+p       +   +v+g + +++r+++e ++a+L+a ga+l+++ +v v+l+d ++  fae+ne y ++  +    Par 
     KOO24053.1  48 TLCDDGTIYVSGTIGLRPvsadgesQAPSIVKGGPMAEARRTMEIIEATLKACGATLENITMVHVYLVDNTKerFAEMNEGYLQFWGDR-PLPARI 142
                    677899**************99987788899**************************************87667**************9.7***** PP

                    EEE-SBSGGG-SEEEEEEEE CS
  Ribonuc_L-PSP 101 aveVaaLpkgakvEIeaiav 120
                    +v+++aL+ g  vEI++ia 
     KOO24053.1 143 TVGCSALALGSCVEIDVIAK 162
                    ******************95 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (163 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       441  (0.024597); expected 358.6 (0.02)
Passed bias filter:                      412  (0.0229795); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.27s 00:00:00.68 Elapsed: 00:00:00.42
# Mc/sec: 1169.44
//
Query:       KOO24054.1  [L=2184]
Description: lipopolysaccharide-modifying protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.4e-39  135.1   0.2    4.5e-39  134.2   0.2    1.4  1  AMP-binding      AMP-binding enzyme
    3.4e-22   78.9   0.0    9.9e-15   54.3   0.0    2.2  2  Glyco_transf_90  Glycosyl transferase family 90
  ------ inclusion threshold ------
      0.012   15.6   0.4      0.029   14.3   0.4    1.6  1  PAN_1            PAN domain


Domain annotation for each model (and alignments):
>> AMP-binding  AMP-binding enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  134.2   0.2   7.6e-43   4.5e-39       7     355 ..      19     371 ..      14     401 .. 0.79

  Alignments for each domain:
  == domain 1  score: 134.2 bits;  conditional E-value: 7.6e-43
                  HSTTSEEEEE....CCSTEEEEHHHHHHHHHHHHHHHHHTTSS.......TT-EEEEEESSSHHHHHHHHHHHHTT-EEEEEETTS-HHHHHHHHHHH CS
  AMP-binding   7 ktpdkvalvd....sgegqtlTYreldervnrlAagLrslGvk.......kgdrVaillpnspewvvallailkaGavvvplnptltaeelayileds 93 
                   +p+++al      + e +t++Y el ++v+++ ++ r+l ++        ++r+ail++ns+ ++v  la++++  + v ln+++ +++l  +l   
   KOO24054.1  19 ARPNAPALLVwstiESERRTISYCELAAHVSAARQHVRHLVLQcpgrttcAKERIAILSHNSAAYLVHSLACMSLCSISVHLNWRMAPPTLGEQLVGL 116
                  578999995568998899************999998887655422222224677******************************************** PP

                  TESEEEETCTCCCHHHHHHHHSCC-EECEEEEESCCS-HCCHCCCHCCCCSCTTS-TSCCCS-BTTSEEEEEEE--SSSS-EEEEEEHHHHHHHHHHH CS
  AMP-binding  94 eakvliatvdselleklleaaakleavklvivldadellkeeelkeeeeseekaekpeeeeelkpddlayiiYTSGTTGkPKGVmlshrnlvanvasl 191
                  ++ +l+  v+++l ++ ++aa +      v v  a +++ +++l++++ +++    ++e+e + pdd+a++++TSG+TGkPK++ ++h+ l++ ++s+
   KOO24054.1 117 DCALLL--VSTTLEANGRQAATDA-PACRVEVFGALGPPLAAPLDAQDRQRA----EVEAELAAPDDVAVVFFTSGSTGKPKAIPHTHGTLLWWAHSY 207
                  ******..8888844444444433.333444555556666666665554442....4567789****************************9999997 PP

                  H..HHHCSC.CTTT-EE..EESS-TTSCHHHHHHHHHHHHTT-EEEE-TTCGCCHHHHHHHHHHHHT-SEEEEEHHHHHHH...HHCCCHHCHHHHCC CS
  AMP-binding 192 k..letrfk.lkeddvv..lsilplahifglilelllallsGatvvllpkdaaldpklllelieklkvtviagvPrvleal...lesgalkaakkakd 281
                     l+  f+ +++++++  ls++p++h++g+++++ l l++Ga  ++l  d+ l+++ll+e+   l++ ++++vP ++e l   l++g++    +++ 
   KOO24054.1 208 TaqLPSIFDaATPRERWgsLSFAPYFHVMGFVANTTLNLVQGAPAYVLASDQVLSARLLVEASLVLEPATLNTVPYIVEGLcglLRDGDEP---TRRV 302
                  7766666443777777666******************************9999999***********************996766644443...4669 PP

                  GTT-SEEEEESS-EBHHHHHHHHHHHTCEEEEEEEEGGGSSECEECHCTTTCTSTTS-BEE-TTEEEEEE-TTT CS
  AMP-binding 282 lsslrlvllggeplspellrffralfgeevlegYGlTEttgvvtvlpleedkkklgsvGkplpgvevkivDeet 355
                  ls+lrl+  gg++l ++++  +r  ++ +   +YG+TEt+g ++  + ++d +    + +p+ g++ +iv  ++
   KOO24054.1 303 LSRLRLITYGGAALASHCAPVLRLNGI-TSACTYGQTETAGPCMLGEVSGDLN----ALRPIGGARFEIVQTAE 371
                  999****99*********966655555.58999**********9644445533....34677777777776554 PP

>> Glyco_transf_90  Glycosyl transferase family 90
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.3   0.0   1.6e-18   9.9e-15      38     244 ..    1795    2013 ..    1766    2018 .. 0.78
   2 !   22.1   0.0     1e-08     6e-05     256     329 ..    2049    2125 ..    2035    2138 .. 0.84

  Alignments for each domain:
  == domain 1  score: 54.3 bits;  conditional E-value: 1.6e-18
  Glyco_transf_90   38 lfrlviingrvyv.....ekykksvqtrdvftiwgilqLlrkypgklpDlelmfncdDrPvvkkkdyrgkeaappPl.fsycgdeetlDivf 123 
                        +r+ i  g++y      ++++++   r     w +l++l +  +k pD+++ +nc+D+P    +  r     ppPl fsy + +   Di  
       KOO24054.1 1795 RTRFHISGGQLYYpdlkhNTFGCV-LRRTPILAWALLEMLARN-PKQPDVDIPVNCRDKPGSLIQGGR-----PPPLaFSYTTGRPFSDIPL 1879
                       577888888888622211334444.456577789999998887.689*************99999888.....78877************** PP

  Glyco_transf_90  124 PdwsfwgwpevnikrwslllkelkegnkkvkweerepyaywkGnpsvaetReeLlkcnrskkelvda.rltkq..............dekke 200 
                       Pd+++w+ p  ++ +w   l     ++++ +w+++  +  w G+p+ +  R++  +c++       + r+ ++              +    
       KOO24054.1 1880 PDYTYWSLPYADLPPWPDWLSFT--RARENHWSQKLDKMIWVGSPTNPL-RQSFQRCAVGAFGERLVhRMPNKeemhelawrckptaEGVPC 1968
                       ****************9988776..788899***************999.********8765443330444447889898888765522223 PP

  Glyco_transf_90  201 skegvkessledqckhkYkiyieGva.asvsekyilacdslvllv 244 
                         ++   ++l++qc+++Y + + G + +   +k+ lac+s+ +++
       KOO24054.1 1969 PTKPHGWTPLQEQCRYRYILHLPGISdWLEHFKHQLACGSVNIFI 2013
                       334444689***************8759999*********98765 PP

  == domain 2  score: 22.1 bits;  conditional E-value: 1e-08
  Glyco_transf_90  256 LkplehYv..Pikskdk..lrdlkeavdwgnahdekaqeiaeegseFireeLkmddvydYmfhLlteYakllkykptv 329 
                       L+  ehYv  P++   +  +++l   +  +  ++e+aq ia egs+   +eL+m++vydYm  +l+e a  ++ ++ +
       KOO24054.1 2049 LAEGEHYVhvPVSGGGEgvCQKLGLVLARLDRQPERAQCIAAEGSRL-SHELSMERVYDYMSGVLSEAAARQQPDVAR 2125
                       6778999534887765566***************************8.699****************99998877665 PP

>> PAN_1  PAN domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   0.4   4.8e-06     0.029      19      54 ..    1275    1309 ..    1268    1323 .. 0.90

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 4.8e-06
                  EECSSHHHHHHHHHHSTTS--SEEEEETTTTEEEEE CS
       PAN_1   19 itvdsaeeCaerCseekkfrCrsftfnnstkeCylk 54  
                   +v+s++eC+ +C   ++  C+s+ +n+  ++Cy+k
  KOO24054.1 1275 SNVSSLDECRDLCGTFAGRGCTSYVYNTL-QACYIK 1309
                  5899**********999999*******98.9**998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (2184 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       351  (0.0195772); expected 358.6 (0.02)
Passed bias filter:                      250  (0.0139439); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.96u 0.27s 00:00:01.23 Elapsed: 00:00:00.46
# Mc/sec: 14372.94
//
Query:       KOO24055.1  [L=707]
Description: phosphoglycerate mutase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.8e-66  221.9   0.8    1.9e-25   89.7   0.0    4.4  4  His_Phos_1  Histidine phosphatase superfamily (branch 1)


Domain annotation for each model (and alignments):
>> His_Phos_1  Histidine phosphatase superfamily (branch 1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   76.6   0.1   1.1e-25     2e-21       1     115 [.      71     192 ..      71     200 .. 0.92
   2 !   34.5   0.0   8.6e-13   1.5e-08      96     184 ..     206     295 ..     199     303 .. 0.81
   3 !   89.7   0.0     1e-29   1.9e-25       1     120 [.     419     543 ..     419     548 .. 0.95
   4 !   16.1   0.0   3.9e-07    0.0069     112     173 ..     582     646 ..     570     662 .. 0.81

  Alignments for each domain:
  == domain 1  score: 76.6 bits;  conditional E-value: 1.1e-25
                 EEEEE---BTT.B--.....TT----B-HHHHHHHHHHHHHHTT..S---EEEE-SSHHHHHHHHHHHHCTT...--EEE-GGGS----GGGTT-B.HH CS
  His_Phos_1   1 lyLvRHGetew.naegr.lqgrtdvpLteeGreqAealaerlag..epidaiysSplkRarqTaeliaealg...lpveldegLrEidfGdweglttae 92 
                 l+L+RHG +e+ ++e r + g++d++L e+G++qA ++a+++++    +d +y+S lkRa++T+ l++ +l+   +   ++ +L+E+++G++ g+t +e
  KOO24055.1  71 LILLRHGASEAeQREPRvFVGWSDPDLCELGEQQAIEAARAIKEagYTFDIVYTSMLKRAVRTVWLLLMELEcihVACWKTWRLNERCYGALTGRTLQE 169
                 79********96445457*************************988899999*********************888888899***************** PP

                 HHHH..HSHHHHHHHHH-GGG-B CS
  His_Phos_1  93 iaeeypeeleawlrdpadvrppg 115
                 ++++y +++ a +r+  ++rpp+
  KOO24055.1 170 MQAKYGADTVAGWRRAFTARPPP 192
                 ***************99999986 PP

  == domain 2  score: 34.5 bits;  conditional E-value: 8.6e-13
                 H..HSHHHHHHHHH-GGG-BS-BHHHHHHHHHHHHH.HHH.HHTTTSEEEEEE-HHHHHHHHHHHHT--GGGGGGB---TT-EEEEEE-SS CS
  His_Phos_1  96 eypeeleawlrdpadvrppggEsledvaaRvaaale.ela.arhegetvlvVsHggvirallarllglpleelrrleldnaslsvlefdeg 184
                 +y+++++++   ++ v+ p+gEs++d  aR+ ++++ e++ +  +g+ vlvV+H+  iral++++ g+  +elr+le++ a   v +fd++
  KOO24055.1 206 RYKRWYDRRGVMRP-VAVPDGESMQDTIARCLPVWKqEILpDLRRGKSVLVVAHANSIRALVQTIDGVTNDELRDLEIPVAIPLVYRFDRK 295
                 56667776665555.78889***************9755515556666*****************************99887777777766 PP

  == domain 3  score: 89.7 bits;  conditional E-value: 1e-29
                 EEEEE---BTTB--....TT----B-HHHHHHHHHHHHHHTT..S---EEEE-SSHHHHHHHHHHHHCTT...--EEE-GGGS----GGGTT-B.HHHH CS
  His_Phos_1   1 lyLvRHGetewnaegrlqgrtdvpLteeGreqAealaerlag..epidaiysSplkRarqTaeliaealg...lpveldegLrEidfGdweglttaeia 94 
                 ++++RHG+te+n+ g + g++dv+L eeGr++A ++++ l++  +++d++y+S l+Ra++Ta l++ +l+   lp+++  +L+E+ +G++ gl+++  +
  KOO24055.1 419 VIIIRHGKTEHNKLGLFTGWEDVELAEEGRQEAIRAGKLLRAhgIEFDVVYTSWLQRAIETAWLVLVELDamwLPIHKSWRLNERMYGALTGLSKKMTR 517
                 689*************************************9977788888************************************************* PP

                 HH..HSHHHHHHHHH-GGG-BS-BHH CS
  His_Phos_1  95 eeypeeleawlrdpadvrppggEsle 120
                   y e+  + +r+ +dv+pp+  s+ 
  KOO24055.1 518 TIYGEKQFKKWRRGYDVKPPKVSSFS 543
                 *****999999999******988876 PP

  == domain 4  score: 16.1 bits;  conditional E-value: 3.9e-07
                 GG-BS-BHHHHHHHHHHHHH.HHHHH..TTTSEEEEEE-HHHHHHHHHHHHT--GGGGGGB---T CS
  His_Phos_1 112 rppggEsledvaaRvaaale.elaar..hegetvlvVsHggvirallarllglpleelrrleldn 173
                 + p  Esl+d+++R  + +  +++++   +g++vl+ s   +ir ll++ll++p +++ ++e+++
  KOO24055.1 582 KLPHSESLKDCMERTIPYFVnNIEKNaiARGKNVLIASSENAIRGLLMHLLEIPTDRIVDIEIPT 646
                 56779**********997763443331146777************************99998865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (707 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       361  (0.020135); expected 358.6 (0.02)
Passed bias filter:                      316  (0.0176251); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.58u 0.28s 00:00:00.86 Elapsed: 00:00:00.44
# Mc/sec: 4819.40
//
Query:       KOO24056.1  [L=163]
Description: hypothetical protein Ctob_009666, partial [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (163 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       883  (0.0492498); expected 358.6 (0.02)
Passed bias filter:                      263  (0.014669); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.44u 0.24s 00:00:00.68 Elapsed: 00:00:00.40
# Mc/sec: 1234.07
//
Query:       KOO24057.1  [L=284]
Description: hypothetical protein Ctob_009670 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (284 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       333  (0.0185733); expected 358.6 (0.02)
Passed bias filter:                      232  (0.0129399); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.40u 0.28s 00:00:00.68 Elapsed: 00:00:00.42
# Mc/sec: 2042.75
//
Query:       KOO24058.1  [L=167]
Description: hypothetical protein Ctob_009671 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (167 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       513  (0.0286129); expected 358.6 (0.02)
Passed bias filter:                      347  (0.0193541); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.40u 0.25s 00:00:00.65 Elapsed: 00:00:00.42
# Mc/sec: 1205.42
//
Query:       KOO24059.1  [L=333]
Description: kelch repeat [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      1e-28   98.8   4.3    1.4e-05   25.0   0.0    6.2  6  Kelch_5   Kelch motif
    1.1e-27   94.8   8.7    2.1e-06   27.5   0.1    6.4  6  Kelch_2   Kelch motif
    1.9e-27   94.5   5.9    2.6e-07   30.1   0.0    6.3  6  Kelch_1   Kelch motif
    3.6e-26   90.9  14.8    1.3e-05   25.3   0.0    6.8  7  Kelch_3   Galactose oxidase, central domain
    8.8e-24   83.0   6.8    1.7e-05   24.9   0.0    6.1  6  Kelch_6   Kelch motif
    1.5e-21   76.1  13.6    4.9e-05   23.3   0.1    6.5  6  Kelch_4   Galactose oxidase, central domain


Domain annotation for each model (and alignments):
>> Kelch_5  Kelch motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.2   0.0     0.015        45       2      25 ..      21      44 ..      20      51 .. 0.86
   2 !   14.2   0.0   1.1e-05     0.032       2      25 ..      78     101 ..      77     107 .. 0.90
   3 !   25.0   0.0   4.6e-09   1.4e-05       2      41 ..     134     171 ..     134     172 .. 0.95
   4 !   13.5   0.2   1.8e-05     0.055       7      39 ..     189     228 ..     186     230 .. 0.80
   5 !   14.6   0.0   8.2e-06     0.025       2      39 ..     243     279 ..     243     282 .. 0.86
   6 !   23.1   0.1   1.8e-08   5.5e-05       2      39 ..     295     330 ..     294     332 .. 0.93

  Alignments for each domain:
  == domain 1  score: 4.2 bits;  conditional E-value: 0.015
     Kelch_5  2 PppRaghcavtvsekiYvyGGkvg 25
                P +R gh +  v+ +++v GG ++
  KOO24059.1 21 PKARGGHTTTLVEKNLLVQGGQQH 44
                7799*****************996 PP

  == domain 2  score: 14.2 bits;  conditional E-value: 1.1e-05
     Kelch_5   2 PppRaghcavtvsekiYvyGGkvg 25 
                 P +Ra+h +  v+++++++GG ++
  KOO24059.1  78 PIARAYHTTTRVGGELFLFGGSTQ 101
                 99*******************996 PP

  == domain 3  score: 25.0 bits;  conditional E-value: 4.6e-09
     Kelch_5   2 PppRaghcavtvsekiYvyGGkvgrdgsvsddvyvLdlps 41 
                 P +R+ h+a+  ++k++v+GG +g  +++ +dv vLd+ +
  KOO24059.1 134 PRARFMHSAALSDGKLFVFGGSDG--KKSLSDVSVLDVAT 171
                 889********************6..***********986 PP

  == domain 4  score: 13.5 bits;  conditional E-value: 1.8e-05
     Kelch_5   7 ghcavtvsekiYvyGGkv......g.rdgsvsddvyvLdl 39 
                  h+   +++k+Y+ GG++      g +  ++s+dv++L+l
  KOO24059.1 189 AHSCTLAGDKLYIVGGMNvsidehGhSFIKYSSDVFTLNL 228
                 34445579**********98888646888999****9997 PP

  == domain 5  score: 14.6 bits;  conditional E-value: 8.2e-06
     Kelch_5   2 PppRaghcavtvsekiYvyGGkvgrdgsvsddvyvLdl 39 
                 P++Ra+h a++v++ + + GG++g + +  d + +Ldl
  KOO24059.1 243 PTGRAYHGAAVVGNFLVLLGGWSG-QVEQVDTISTLDL 279
                 99*********************8.7777777777776 PP

  == domain 6  score: 23.1 bits;  conditional E-value: 1.8e-08
     Kelch_5   2 PppRaghcavtvsekiYvyGGkvgrdgsvsddvyvLdl 39 
                 P++ +gh a + +++i+++GG++g   s+   v vLd+
  KOO24059.1 295 PAGVYGHTATVIGSNILIFGGWDG--VSPLATVNVLDT 330
                 899********************6..**********97 PP

>> Kelch_2  Kelch motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.0   0.0   0.00048       1.4       1      44 [.      23      69 ..      23      71 .. 0.92
   2 !   11.4   0.0   8.3e-05      0.25       1      27 [.      80     106 ..      80     127 .. 0.74
   3 !   27.5   0.1   7.1e-10   2.1e-06       2      48 ..     137     180 ..     136     181 .. 0.91
   4 !   25.7   0.1   2.6e-09   7.8e-06       3      44 ..     188     235 ..     186     238 .. 0.94
   5 ?    3.5   0.1     0.025        75       1      46 [.     245     289 ..     245     292 .. 0.76
   6 !   17.8   0.1   8.1e-07    0.0024       2      39 ..     298     332 ..     297     332 .. 0.91

  Alignments for each domain:
  == domain 1  score: 9.0 bits;  conditional E-value: 0.00048
     Kelch_2  1 rrgghsssvpggkiyvvGGa...htdnpnlsssdvhvldlekhvWee 44
                +rggh+++ ++  ++v GG     ++ +  +s+   vld+e+h+W e
  KOO24059.1 23 ARGGHTTTLVEKNLLVQGGQqhkNAGVFEYFSCNPTVLDTETHTWFE 69
                699999999999999999999999999999999************86 PP

  == domain 2  score: 11.4 bits;  conditional E-value: 8.3e-05
     Kelch_2   1 rrgghsssvpggkiyvvGGahtdnpnl 27 
                 +r+ h+++ +gg ++++GG+   n+++
  KOO24059.1  80 ARAYHTTTRVGGELFLFGGSTQKNGDC 106
                 5999****************3333333 PP

  == domain 3  score: 27.5 bits;  conditional E-value: 7.1e-10
     Kelch_2   2 rgghsssvpggkiyvvGGahtdnpnlsssdvhvldlekhvWeevtpl 48 
                 r+ hs++ ++gk++v+GG+   ++  s sdv vld  +  W+  +++
  KOO24059.1 137 RFMHSAALSDGKLFVFGGS---DGKKSLSDVSVLDVATMLWSMPNCS 180
                 6679***************...*******************977776 PP

  == domain 4  score: 25.7 bits;  conditional E-value: 2.6e-09
     Kelch_2   3 gghsssvpggkiyvvGGa......htdnpnlsssdvhvldlekhvWee 44 
                   hs++  g+k+y+vGG       h++ +  +ssdv +l+l +  W +
  KOO24059.1 188 QAHSCTLAGDKLYIVGGMnvsideHGHSFIKYSSDVFTLNLVTMDWQR 235
                 57********************************************76 PP

  == domain 5  score: 3.5 bits;  conditional E-value: 0.025
     Kelch_2   1 rrgghsssvpggkiyvvGGahtdnpnlsssdvhvldlekh.vWeevt 46 
                 +r+ h ++v+g+ +++ GG+  ++ ++  +++ +ldl++  +W+ vt
  KOO24059.1 245 GRAYHGAAVVGNFLVLLGGW--SGQVEQVDTISTLDLDGMgTWATVT 289
                 58999***************..7777777777777777643555555 PP

  == domain 6  score: 17.8 bits;  conditional E-value: 8.1e-07
     Kelch_2   2 rgghsssvpggkiyvvGGahtdnpnlsssdvhvldlek 39 
                  +gh+++v+g+ i+++GG+   ++++   +v+vld+ k
  KOO24059.1 298 VYGHTATVIGSNILIFGGW---DGVSPLATVNVLDTTK 332
                 69*****************...9999999999999875 PP

>> Kelch_1  Kelch motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.9   0.0     0.014        41      31      39 ..      59      67 ..      23      69 .. 0.75
   2 !    9.5   0.0   0.00024      0.71       1      21 [.      80     100 ..      80     107 .. 0.92
   3 !   30.1   0.0   8.6e-11   2.6e-07       1      40 [.     136     175 ..     136     177 .. 0.93
   4 !   14.1   0.0     9e-06     0.027       5      41 ..     190     235 ..     188     238 .. 0.90
   5 !   13.8   0.1   1.1e-05     0.032       2      23 ..     246     268 ..     245     288 .. 0.82
   6 !   20.4   0.1   9.4e-08   0.00028       3      35 ..     299     331 ..     297     332 .. 0.94

  Alignments for each domain:
  == domain 1  score: 3.9 bits;  conditional E-value: 0.014
                EEETTTTEE CS
     Kelch_1 31 vyDpetntW 39
                v+D+et+tW
  KOO24059.1 59 VLDTETHTW 67
                89******* PP

  == domain 2  score: 9.5 bits;  conditional E-value: 0.00024
                 BBBSEEEEEETTEEEEEEEBC CS
     Kelch_1   1 aragagavvvggkiYviGGsd 21 
                 ara+++ + vgg+++ +GGs 
  KOO24059.1  80 ARAYHTTTRVGGELFLFGGST 100
                 69*****************85 PP

  == domain 3  score: 30.1 bits;  conditional E-value: 8.6e-11
                 BBBSEEEEEETTEEEEEEEBCSSSBEEEEEEEETTTTEEE CS
     Kelch_1   1 aragagavvvggkiYviGGsdggnalssvevyDpetntWr 40 
                 ar  ++a+  +gk++v+GGsdg ++ls+v v+D+ t  W+
  KOO24059.1 136 ARFMHSAALSDGKLFVFGGSDGKKSLSDVSVLDVATMLWS 175
                 6899*****************************9987775 PP

  == domain 4  score: 14.1 bits;  conditional E-value: 9e-06
                 EEEEEETTEEEEEEEBCS.........SSBEEEEEEEETTTTEEEE CS
     Kelch_1   5 agavvvggkiYviGGsdg.........gnalssvevyDpetntWre 41 
                 ++++  g+k+Y++GG++           +++s+v+ ++++t  W +
  KOO24059.1 190 HSCTLAGDKLYIVGGMNVsidehghsfIKYSSDVFTLNLVTMDWQR 235
                 788889****************************999999877766 PP

  == domain 5  score: 13.8 bits;  conditional E-value: 1.1e-05
                 BBSEEEEEETTEEEEEEEBCS.S CS
     Kelch_1   2 ragagavvvggkiYviGGsdg.g 23 
                 ra++ga+vvg+ +  +GG++g  
  KOO24059.1 246 RAYHGAAVVGNFLVLLGGWSGqV 268
                 9********************53 PP

  == domain 6  score: 20.4 bits;  conditional E-value: 9.4e-08
                 BSEEEEEETTEEEEEEEBCSSSBEEEEEEEETT CS
     Kelch_1   3 agagavvvggkiYviGGsdggnalssvevyDpe 35 
                 +g++a+v+g  i ++GG+dg ++l +v v+D++
  KOO24059.1 299 YGHTATVIGSNILIFGGWDGVSPLATVNVLDTT 331
                 79*************************999987 PP

>> Kelch_3  Galactose oxidase, central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.1       1.1   3.4e+03      31      48 ..       7      31 ..       3      32 .. 0.59
   2 !    8.6   0.1   0.00079       2.4      23      47 ..      59      87 ..      58      89 .. 0.90
   3 !   17.5   0.0   1.3e-06    0.0038       1      47 [.      90     143 ..      90     144 .. 0.86
   4 !   18.5   0.0     6e-07    0.0018       2      34 ..     147     177 ..     146     195 .. 0.80
   5 !   25.3   0.0   4.3e-09   1.3e-05       1      48 [.     196     253 ..     196     254 .. 0.85
   6 !   21.9   0.3   5.1e-08   0.00015       1      49 []     255     306 ..     255     306 .. 0.92
   7 ?    4.2   0.0     0.018        54       3      19 ..     309     323 ..     307     332 .. 0.69

  Alignments for each domain:
  == domain 1  score: -1.5 bits;  conditional E-value: 1.1
     Kelch_3 31 Waei......asl.ppaRaghaata 48
                Wa +      +s  p aR gh++t+
  KOO24059.1  7 WAALktsvheGSKaPKARGGHTTTL 31
                6633223455343266999999995 PP

  == domain 2  score: 8.6 bits;  conditional E-value: 0.00079
     Kelch_3 23 vydldtntWaei....aslppaRaghaat 47
                v+d++t+tW e     +  p aRa+h++t
  KOO24059.1 59 VLDTETHTWFEPrvalGKGPIARAYHTTT 87
                7999******88888899999******98 PP

  == domain 3  score: 17.5 bits;  conditional E-value: 1.3e-06
     Kelch_3   1 gdrlyifGGlgddgqdrl....ndvyvydldtntWaei...aslppaRaghaat 47 
                 g++l++fGG +  ++d+     +d+ v+dl++  W++    ++ p aR  h+a+
  KOO24059.1  90 GGELFLFGGSTQKNGDCItgvlGDMPVFDLVRMAWDTKdvrGRKPRARFMHSAA 143
                 678********977777755557777**********999************997 PP

  == domain 4  score: 18.5 bits;  conditional E-value: 6e-07
     Kelch_3   2 drlyifGGlgddgqdrlndvyvydldtntWaei 34 
                 ++l++fGG +  g ++l+dv v+d++t  W + 
  KOO24059.1 147 GKLFVFGGSD--GKKSLSDVSVLDVATMLWSMP 177
                 68********..******************854 PP

  == domain 5  score: 25.3 bits;  conditional E-value: 4.3e-09
     Kelch_3   1 gdrlyifGGlgd.....dg..qdrlndvyvydldtntWaei...aslppaRaghaata 48 
                 gd+lyi+GG +      ++   ++++dv+ ++l+t  W+++   ++ p++Ra+h a++
  KOO24059.1 196 GDKLYIVGGMNVsidehGHsfIKYSSDVFTLNLVTMDWQRLrrrGEQPTGRAYHGAAV 253
                 799********98864422345555*****************99***********987 PP

  == domain 6  score: 21.9 bits;  conditional E-value: 5.1e-08
     Kelch_3   1 gdrlyifGGlgddgqdrlndvy.vydldtn.tWaei...aslppaRaghaatai 49 
                 g++l++ GG+   gq    d+   +dld   tWa++   +++p + +gh+at+i
  KOO24059.1 255 GNFLVLLGGWS--GQVEQVDTIsTLDLDGMgTWATVtvpGQPPAGVYGHTATVI 306
                 799********..999998888688***99****9999999999********97 PP

  == domain 7  score: 4.2 bits;  conditional E-value: 0.018
     Kelch_3   3 rlyifGGlgddgqdrln 19 
                  ++ifGG++  g  +l 
  KOO24059.1 309 NILIFGGWD--GVSPLA 323
                 489******..655555 PP

>> Kelch_6  Kelch motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.1   0.0      0.37   1.1e+03       4      40 ..      26      67 ..      23      69 .. 0.63
   2 !    8.6   0.0   0.00079       2.4       1      34 [.      80     118 ..      80     126 .. 0.72
   3 !   24.9   0.0   5.7e-09   1.7e-05       2      41 ..     137     175 ..     136     176 .. 0.94
   4 !   24.0   0.0   1.1e-08   3.3e-05       4      43 ..     189     236 ..     187     244 .. 0.96
   5 !   13.1   0.1   2.9e-05     0.087       2      37 ..     246     281 ..     245     297 .. 0.77
   6 !    9.8   0.1   0.00032      0.97       4      29 ..     300     324 ..     298     331 .. 0.79

  Alignments for each domain:
  == domain 1  score: 0.1 bits;  conditional E-value: 0.37
     Kelch_6  4 ghslvsvggkiYifGGytds....spylnk.vwvydpetksW 40
                gh++++v   + + GG+ +     ++y+++ + v+d et++W
  KOO24059.1 26 GHTTTLVEKNLLVQGGQQHKnagvFEYFSCnPTVLDTETHTW 67
                577777777777777777766666444443256777777777 PP

  == domain 2  score: 8.6 bits;  conditional E-value: 0.00079
     Kelch_6   1 praghslvsvggkiYifGGytds.....spylnkvwvyd 34 
                 +ra+h+++ vgg +++fGG+t+      +  l ++ v+d
  KOO24059.1  80 ARAYHTTTRVGGELFLFGGSTQKngdciTGVLGDMPVFD 118
                 589999999************966655555555555555 PP

  == domain 3  score: 24.9 bits;  conditional E-value: 5.7e-09
     Kelch_6   2 raghslvsvggkiYifGGytdsspylnkvwvydpetksWe 41 
                 r  hs+++ +gk+++fGG+++  ++l++v v+d+ t+ W+
  KOO24059.1 137 RFMHSAALSDGKLFVFGGSDG-KKSLSDVSVLDVATMLWS 175
                 5679*****************.9**************996 PP

  == domain 4  score: 24.0 bits;  conditional E-value: 1.1e-08
     Kelch_6   4 ghslvsvggkiYifGGytds........spylnkvwvydpetksWeql 43 
                 +hs++++g+k+Yi+GG + s         +y+++v+ +++ t+ W++l
  KOO24059.1 189 AHSCTLAGDKLYIVGGMNVSidehghsfIKYSSDVFTLNLVTMDWQRL 236
                 69*******************************************987 PP

  == domain 5  score: 13.1 bits;  conditional E-value: 2.9e-05
     Kelch_6   2 raghslvsvggkiYifGGytdsspylnkvwvydpet 37 
                 ra+h +++vg++++++GG++++ + ++ +  +d++ 
  KOO24059.1 246 RAYHGAAVVGNFLVLLGGWSGQVEQVDTISTLDLDG 281
                 89*****************99855556666666555 PP

  == domain 6  score: 9.8 bits;  conditional E-value: 0.00032
     Kelch_6   4 ghslvsvggkiYifGGytdsspylnk 29 
                 gh+++++g+ i ifGG+++  ++l  
  KOO24059.1 300 GHTATVIGSNILIFGGWDG-VSPLAT 324
                 899**************99.455544 PP

>> Kelch_4  Galactose oxidase, central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.7   0.0    0.0012       3.6       1      41 [.      23      67 ..      23      77 .. 0.77
   2 !   23.3   0.1   1.6e-08   4.9e-05       1      41 [.      80     124 ..      80     128 .. 0.91
   3 !   21.7   0.0   4.9e-08   0.00015       1      42 [.     136     175 ..     134     176 .. 0.85
   4 !   14.4   0.0   9.6e-06     0.029       5      45 ..     190     240 ..     188     244 .. 0.87
   5 !    4.8   0.9    0.0093        28       1      48 [.     245     295 ..     245     296 .. 0.77
   6 !    7.9   0.3     0.001         3       4      20 ..     300     315 ..     299     331 .. 0.85

  Alignments for each domain:
  == domain 1  score: 7.7 bits;  conditional E-value: 0.0012
     Kelch_4  1 pRaghsatsipdgtiylfGGrgedg.....tllndlylldlstntW 41
                +R+gh++t +   ++ + GG++ ++      ++ +  +ld++t tW
  KOO24059.1 23 ARGGHTTTLVE-KNLLVQGGQQHKNagvfeYFSCNPTVLDTETHTW 67
                7*********6.68888***99887677765555666667777666 PP

  == domain 2  score: 23.3 bits;  conditional E-value: 1.6e-08
     Kelch_4   1 pRaghsatsipdgtiylfGGrgedg.....tllndlylldlstntW 41 
                 +Ra+h++t ++ g+++lfGG + ++     ++l+d+ ++dl    W
  KOO24059.1  80 ARAYHTTTRVG-GELFLFGGSTQKNgdcitGVLGDMPVFDLVRMAW 124
                 7*********6.************88**************976555 PP

  == domain 3  score: 21.7 bits;  conditional E-value: 4.9e-08
     Kelch_4   1 pRaghsatsipdgtiylfGGrgedgtllndlylldlstntWr 42 
                 +R+ hsa    dg++++fGG  ++ ++l+d+ +ld++t  W+
  KOO24059.1 136 ARFMHSAALS-DGKLFVFGGSDGK-KSLSDVSVLDVATMLWS 175
                 4556666666.8************.9***********98887 PP

  == domain 4  score: 14.4 bits;  conditional E-value: 9.6e-06
     Kelch_4   5 hsatsipdgtiylfGGrgedg........tllndlylldlstntWrrl...g 45 
                 hs+t  + +++y++GG +           + ++d++ l+l t  W+rl   g
  KOO24059.1 190 HSCTLAG-DKLYIVGGMNVSIdehghsfiKYSSDVFTLNLVTMDWQRLrrrG 240
                 999*996.9**********636***********************9986554 PP

  == domain 5  score: 4.8 bits;  conditional E-value: 0.0093
     Kelch_4   1 pRaghsatsipdgtiylfGGrgedgtllndlylldl.stntWrrl...gslP 48 
                 +Ra+h+a +++ + ++l GG +++ + ++ +  ldl  ++tW ++   g++P
  KOO24059.1 245 GRAYHGAAVVG-NFLVLLGGWSGQVEQVDTISTLDLdGMGTWATVtvpGQPP 295
                 59********6.9*******88877777777777777777777776666655 PP

  == domain 6  score: 7.9 bits;  conditional E-value: 0.001
     Kelch_4   4 ghsatsipdgtiylfGG 20 
                 gh+at+i+  +i +fGG
  KOO24059.1 300 GHTATVIG-SNILIFGG 315
                 8******7.68888**9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (333 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       284  (0.0158403); expected 358.6 (0.02)
Passed bias filter:                      260  (0.0145016); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.44u 0.25s 00:00:00.69 Elapsed: 00:00:00.41
# Mc/sec: 2461.79
//
Query:       KOO24060.1  [L=405]
Description: hypothetical protein Ctob_007628 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
     0.0017   18.3  34.1      0.019   15.0   1.8    5.1  4  CENP-F_leu_zip  Leucine-rich repeats of kinetochore protein C
     0.0024   17.3   0.9        1.5    8.4   0.1    2.7  2  YvrJ            YvrJ protein family
     0.0056   16.7  13.3     0.0056   16.7  13.3    5.8  5  TPR_MLP1_2      TPR/MLP1/MLP2-like protein
     0.0061   16.7   6.1     0.0061   16.7   6.1    3.9  5  CEP209_CC5      Coiled-coil region of centrosome protein CE29
  ------ inclusion threshold ------
      0.037   14.5  34.2       0.22   12.0  15.5    3.7  3  Fez1            Fez1
      0.041   14.0   9.8          1    9.6   1.0    4.3  4  DUF5446         Family of unknown function (DUF5446)
       0.18   12.3  51.0       0.27   11.8   3.2    4.6  4  APG6_N          Apg6 coiled-coil region
       0.19   11.8  15.4       0.48   10.5   0.9    4.2  4  DUF1664         Protein of unknown function (DUF1664)
       0.23   11.8  13.8       0.17   12.2   0.9    4.6  4  BLOC1_2         Biogenesis of lysosome-related organelles com
       0.27   11.1   4.5        1.2    9.0   0.1    3.6  4  WD40_alt        Alternative WD40 repeat motif
       0.72    9.2  38.9      0.029   13.7   8.6    5.0  5  GAS             Growth-arrest specific micro-tubule binding
       0.78   10.0   5.6         13    6.1   1.5    4.1  4  DUF948          Bacterial protein of unknown function (DUF948
       0.81    9.8   8.5       0.14   12.3   1.9    2.5  2  Kinesin_assoc   Kinesin-associated
          2    8.6   9.5        3.8    7.7   0.2    3.8  4  Fib_alpha       Fibrinogen alpha/beta chain family
        4.5    6.0  45.3       0.67    8.7  13.9    3.2  3  CALCOCO1        Calcium binding and coiled-coil domain (CALCO
        9.5    5.2  30.8          2    7.5   7.9    3.1  3  Atg14           Vacuolar sorting 38 and autophagy-related sub


Domain annotation for each model (and alignments):
>> CENP-F_leu_zip  Leucine-rich repeats of kinetochore protein Cenp-F/LEK1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.7   0.4      0.11   1.2e+02      11      35 ..       7      31 ..       2      38 .. 0.71
   2 !   15.0   1.8   1.7e-05     0.019      25      97 ..      51     123 ..      46     135 .. 0.88
   3 !    9.9  10.4   0.00064      0.72      10     125 ..     150     290 ..     142     308 .. 0.72
   4 ?    2.0   1.1      0.18     2e+02      84     111 ..     341     368 ..     311     395 .. 0.62

  Alignments for each domain:
  == domain 1  score: 2.7 bits;  conditional E-value: 0.11
  CENP-F_leu_zip 11 kLKeserkadsLkdkvenLerelem 35
                     L + +r+++ L+  v++L ++l+ 
      KOO24060.1  7 LLEREQREKNALEAEVLSLRQQLKR 31
                    5667777777777777777777764 PP

  == domain 2  score: 15.0 bits;  conditional E-value: 1.7e-05
  CENP-F_leu_zip  25 kvenLerelemseenqekvileaEtskaevetlkeeieelaeelreleldLvalrsekeeLekelqk.kqervs 97 
                     ++  L+++le++ e   + i e++  + eve l+  ++   +e  +l+++L+++r e+  L+ el + kq  vs
      KOO24060.1  51 RIMLLKAQLEDATERSKAHIAEVDRLRDEVERLRGCLND-HREPGQLRSELAHVRDERVRLALELYEaKQAAVS 123
                     7889999*****************************999.788899****************999652666665 PP

  == domain 3  score: 9.9 bits;  conditional E-value: 0.00064
  CENP-F_leu_zip  10 ekLKeserkadsLkdkvenLerelemseenqekvileaEtskaevetlkeeieelaeelreleldLvalr......................... 79 
                      +L es+ + + L++   +L+ e + +    +++  e    + e  ++ e++  l e+l+  e+ L+alr                         
      KOO24060.1 150 AQLAESRAHVSGLHEEHTSLQHEYNHVLGMAQQLADELQRVRHEHGQVAEQKLALIERLNATEHTLSALRhelkqreddfqvdlslfaardaetr 244
                     56666666666666666666666666666666666666666677767777777777777777777777766666666777777777778898887 PP

  CENP-F_leu_zip  80 sekeeLekelqkkqervseLeslnsslenlleekEqekvqmkeesk 125
                        + L+ e ++ + r +eLe+l    e+ + ++E+e +q+++  +
      KOO24060.1 245 ASIDRLTAEGRTARARAEELETLPPRYEQRIAQLEAEIRQLRKVGE 290
                     88999********************************877765433 PP

  == domain 4  score: 2.0 bits;  conditional E-value: 0.18
  CENP-F_leu_zip  84 eLekelqkkqervseLeslnsslenlle 111
                      Le  l++ q +++e ++l  +le+ l 
      KOO24060.1 341 RLEATLKELQATIHERDRLSATLEEALM 368
                     3455555555555555555555555554 PP

>> YvrJ  YvrJ protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.8   0.0    0.0043       4.9      18      35 ..     270     287 ..     269     288 .. 0.94
   2 !    8.4   0.1    0.0014       1.5      17      32 ..     340     355 ..     338     356 .. 0.95

  Alignments for each domain:
  == domain 1  score: 6.8 bits;  conditional E-value: 0.0043
        YvrJ  18 RiEkkLdeLtksIeeLse 35 
                 R+E ++ +L   I++L++
  KOO24060.1 270 RYEQRIAQLEAEIRQLRK 287
                 9***************87 PP

  == domain 2  score: 8.4 bits;  conditional E-value: 0.0014
        YvrJ  17 vRiEkkLdeLtksIee 32 
                 +R+E++L+eL+ +I+e
  KOO24060.1 340 HRLEATLKELQATIHE 355
                 8*************97 PP

>> TPR_MLP1_2  TPR/MLP1/MLP2-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.4   0.5      0.58   6.4e+02      66      89 ..       8      31 ..       3      35 .. 0.56
   2 ?   -1.1   6.9       1.6   1.8e+03       8      88 ..      57     129 ..      49     137 .. 0.45
   3 !   16.7  13.3     5e-06    0.0056       9     111 ..     137     239 ..     129     246 .. 0.93
   4 ?    1.5   7.1      0.25   2.8e+02      57     128 ..     273     344 ..     238     345 .. 0.74
   5 ?    0.4   0.9      0.55   6.2e+02      61      95 ..     341     375 ..     331     390 .. 0.65

  Alignments for each domain:
  == domain 1  score: 0.4 bits;  conditional E-value: 0.58
  TPR_MLP1_2 66 lnelkaeiaelkaeaesakaelee 89
                l++ + e + l+ae+ s++++l++
  KOO24060.1  8 LEREQREKNALEAEVLSLRQQLKR 31
                455555555555555555555554 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 1.6
  TPR_MLP1_2   8 eeikslkeekeeaeaklqklqedlekqaeiakeaqqkYerelvkhaedvkelqalreelnelkaeiaelkaeaesakaele 88 
                 +++++++e+++++ a++  l++++e  +  +++  +          +   el+ +r+e  +l  e+ e+k++a sa+a+ +
  KOO24060.1  57 AQLEDATERSKAHIAEVDRLRDEVERLRGCLNDHRE--------PGQLRSELAHVRDERVRLALELYEAKQAAVSAHAQAQ 129
                 333334444444444444444443333333333333........3444445555555555555555555555555555554 PP

  == domain 3  score: 16.7 bits;  conditional E-value: 5e-06
  TPR_MLP1_2   9 eikslkeekeeaeaklqklqedlekqaeiakeaqqkYerelvkhaedvkelqalreelnelkaeiaelkaeaesakaeleeseesweeqkeelekelse 107
                  +++l+++ +ea+a+l++ +  +   +e+ +  q  Y + l    + ++elq++r e+ ++ ++   l +++++++++l++ + +++++++ ++ +ls 
  KOO24060.1 137 AVDALRASTSEAQAQLAESRAHVSGLHEEHTSLQHEYNHVLGMAQQLADELQRVRHEHGQVAEQKLALIERLNATEHTLSALRHELKQREDDFQVDLSL 235
                 67789999**************************************************************************************99998 PP

  TPR_MLP1_2 108 lekr 111
                 + +r
  KOO24060.1 236 FAAR 239
                 7776 PP

  == domain 4  score: 1.5 bits;  conditional E-value: 0.25
  TPR_MLP1_2  57 kelqalreelnelkaeiaelkaeaesakaeleeseesweeqkeelekelselekriedlneqNklLhdQlEs 128
                 + +++l +e+ +l++  +   a+a+  + e  +     e  + el+++ ++   rie  +++N +L  +lE+
  KOO24060.1 273 QRIAQLEAEIRQLRKVGEAHAARAQHFEVERGQLAGLVEVSEIELRRNHASNADRIERQDAKNLMLSHRLEA 344
                 566777777777777777777777777777777778888888888888888888888888888888877775 PP

  == domain 5  score: 0.4 bits;  conditional E-value: 0.55
  TPR_MLP1_2  61 alreelnelkaeiaelkaeaesakaeleeseeswe 95 
                 +l + l+el+a+i+e      +++++l ++++s+ 
  KOO24060.1 341 RLEATLKELQATIHERDRLSATLEEALMRCTSSLV 375
                 45666667777777766666666666666666654 PP

>> CEP209_CC5  Coiled-coil region of centrosome protein CE290
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.2       2.1   2.4e+03      87     110 ..       4      27 ..       2      33 .. 0.61
   2 ?   -2.2   0.2       3.9   4.3e+03      20      36 ..     104     118 ..      90     156 .. 0.56
   3 ?   -1.4   0.1       2.3   2.5e+03      22      45 ..     144     167 ..     124     176 .. 0.56
   4 !   16.7   6.1   5.5e-06    0.0061      10     125 ..     181     302 ..     179     304 .. 0.85
   5 ?    3.4   0.5     0.074        82      69     124 ..     331     386 ..     322     390 .. 0.79

  Alignments for each domain:
  == domain 1  score: -1.3 bits;  conditional E-value: 2.1
  CEP209_CC5  87 lknlieeqertisklEeeivqlnk 110
                  ++l e+++r  + lE e++ l +
  KOO24060.1   4 VRRLLEREQREKNALEAEVLSLRQ 27 
                 556666666666666666666554 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 3.9
  CEP209_CC5  20 eeerrkaeskavelelk 36 
                 + er ++  ++  +e k
  KOO24060.1 104 RDERVRLALEL--YEAK 118
                 44443333333..2222 PP

  == domain 3  score: -1.4 bits;  conditional E-value: 2.3
  CEP209_CC5  22 errkaeskavelelklkgLeelis 45 
                    +a+ +++e     +gL+e   
  KOO24060.1 144 STSEAQAQLAESRAHVSGLHEEHT 167
                 344455555555555555555444 PP

  == domain 4  score: 16.7 bits;  conditional E-value: 5.5e-06
  CEP209_CC5  10 akleeelkkleeerrkaeskavelelklkgLeelistlk....dakgaqk.....vleWhkkieelrlqelklkreltkqkeeikylknlieeqertis 99 
                 ++l  el+++++e++++ ++   l  +l+  e  +s+l+     +          +    ++ +e+r++  +l+ e  +++ + + l++l  ++e+ i+
  KOO24060.1 181 QQLADELQRVRHEHGQVAEQKLALIERLNATEHTLSALRhelkQRE---DdfqvdLSLFAARDAETRASIDRLTAEGRTARARAEELETLPPRYEQRIA 276
                 578899**********999988877777777777777773222333...24445577899999************************************ PP

  CEP209_CC5 100 klEeeivqlnkvheerqlaweqreve 125
                 +lE ei ql kv e +++ +++ eve
  KOO24060.1 277 QLEAEIRQLRKVGEAHAARAQHFEVE 302
                 **********************9987 PP

  == domain 5  score: 3.4 bits;  conditional E-value: 0.074
  CEP209_CC5  69 qelklkreltkqkeeikylknlieeqertisklEeeivqlnkvheerqlaweqrev 124
                 q+ k      +     k l+  i+e++r  + lEe ++++++    rqla +  ++
  KOO24060.1 331 QDAKNLMLSHRLEATLKELQATIHERDRLSATLEEALMRCTSSLVARQLAEDDCKA 386
                 6666666666677788999999999999999****999999999999999887665 PP

>> Fez1  Fez1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   1.2   0.00042      0.47      86     150 ..      13      93 ..       4     110 .. 0.74
   2 ?   12.0  15.5   0.00019      0.22      25     163 ..     130     304 ..     124     308 .. 0.64
   3 ?    0.3   7.3      0.71   7.9e+02      33     108 ..     275     358 ..     270     399 .. 0.45

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00042
        Fez1  86 rekvekleeelkelreelselsleeeeaa................lesdeakaq.rqeaeeleelkreverlraeLkeerqk 150
                 r + ++le+e+ +lr++l+++s+++                    ++ ++a ++ +++  e+++l+ everlr+ L+  r+ 
  KOO24060.1  13 R-EKNALEAEVLSLRQQLKRASPRKVGFGdgadgavegerimllkAQLEDATERsKAHIAEVDRLRDEVERLRGCLNDHREP 93 
                 3.367899********999988766555599999999999999884444444441555788999**********99988764 PP

  == domain 2  score: 12.0 bits;  conditional E-value: 0.00019
        Fez1  25 evtqklseivalkaqlrelrakleekeeeikeleesleektle.......levcenelqrk.......kseaellrekvekleeelkelreelselsle 109
                   tq++  + al+a++ e++a+l e+ ++++ l+e+ ++ ++e        +++ +elqr         +++  l e+++++e+ l+ lr+el++ +  
  KOO24060.1 130 HATQQVAAVDALRASTSEAQAQLAESRAHVSGLHEEHTSLQHEynhvlgmAQQLADELQRVrhehgqvAEQKLALIERLNATEHTLSALRHELKQRED- 227
                 45778888889**************************9999998888887677777777774444443444445556666777777777777666433. PP

        Fez1 110 eeeaa.......................lesdeakaqrqe....aeeleelkreverlraeLkeer...qkkeeqassFeqERr 163
                                             +e ++a+a+ +e         + ++++++l+ae+++ r   +++ ++a++Fe ER 
  KOO24060.1 228 ----DfqvdlslfaardaetrasidrltAEGRTARARAEEletlP---PRYEQRIAQLEAEIRQLRkvgEAHAARAQHFEVERG 304
                 ....03345688888888777777766544444444444432221...334455555555544444000455566788999985 PP

  == domain 3  score: 0.3 bits;  conditional E-value: 0.71
        Fez1  33 ivalkaqlrelrakleekeeeikeleesleektlelevcenelqrk...........kseaellrekvekleeelkelreelselsl 108
                 i +l a++r+lr+  e++ ++++++e ++ + +  +ev e el+r+              a++l    ++le+ lkel+ +++e  +
  KOO24060.1 275 IAQLEAEIRQLRKVGEAHAARAQHFEVERGQLAGLVEVSEIELRRNhasnadrierqD--AKNLML-SHRLEATLKELQATIHERDR 358
                 4455666666666666666666666666666666666666666666444443333211..111111.22333333333333322221 PP

>> DUF5446  Family of unknown function (DUF5446)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.8   0.1     0.059        66      37      64 ..      63      90 ..      53      97 .. 0.79
   2 ?   -0.6   0.1       1.3   1.5e+03      27      51 ..     182     206 ..     174     225 .. 0.58
   3 ?    3.0   0.0      0.11   1.2e+02      43      58 ..     271     286 ..     251     298 .. 0.81
   4 ?    9.6   1.0    0.0009         1      20      61 ..     311     353 ..     310     361 .. 0.90

  Alignments for each domain:
  == domain 1  score: 3.8 bits;  conditional E-value: 0.059
     DUF5446 37 aekeekeeerldllekElkdLvlCigkl 64
                 e  ++  + +d+l +E++ L  C+++ 
  KOO24060.1 63 TERSKAHIAEVDRLRDEVERLRGCLNDH 90
                56666667889**************986 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 1.3
     DUF5446  27 elseavneteaekeekeeerldlle 51 
                 +l   +++ + e  +  e+ l l+e
  KOO24060.1 182 QLADELQRVRHEHGQVAEQKLALIE 206
                 4555555555555555555555555 PP

  == domain 3  score: 3.0 bits;  conditional E-value: 0.11
     DUF5446  43 eeerldllekElkdLv 58 
                  e+r+ +le E+  L 
  KOO24060.1 271 YEQRIAQLEAEIRQLR 286
                 69**********9985 PP

  == domain 4  score: 9.6 bits;  conditional E-value: 0.0009
     DUF5446  20 eltevEkelseavneteaekeekeeerld.llekElkdLvlCi 61 
                 e++e+E   ++a n+ ++e + +++ +l+ +le  lk+L+  i
  KOO24060.1 311 EVSEIELRRNHASNADRIERQDAKNLMLShRLEATLKELQATI 353
                 6899************************857*******98766 PP

>> APG6_N  Apg6 coiled-coil region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.5  11.1     0.021        23      18     132 ..       8     134 ..       4     135 .. 0.76
   2 ?   10.4   9.3   0.00061      0.69      37     130 ..     143     233 ..     135     236 .. 0.84
   3 ?   11.8   3.2   0.00024      0.27      49     116 ..     240     307 ..     226     325 .. 0.83
   4 ?    1.6   5.5      0.34   3.8e+02      58     115 ..     327     384 ..     312     398 .. 0.53

  Alignments for each domain:
  == domain 1  score: 5.5 bits;  conditional E-value: 0.021
      APG6_N  18 leqaekerdaYeeflkklkkekkeeek.............qdeeleeleeeleklekeeeelleeLkelekereeleaelaaleeelealeeeeerfwr 103
                 le+ ++e++a+e+    l+++ k ++              + e +  l+ +le+  +  ++ ++e ++l +e e+l+  l++  +e  +l  e +    
  KOO24060.1   8 LEREQREKNALEAEVLSLRQQLKRASPrkvgfgdgadgavEGERIMLLKAQLEDATERSKAHIAEVDRLRDEVERLRGCLNDH-REPGQLRSELAHVRD 105
                 44444555555544444444433333355566668888888888888888999999999999999999999999999998875.667789999999999 PP

      APG6_N 104 eynelqlelleleeeldsleaqyehaqnq 132
                 e+  l+lel e ++   s  aq +ha++q
  KOO24060.1 106 ERVRLALELYEAKQAAVSAHAQAQHATQQ 134
                 9999**********************998 PP

  == domain 2  score: 10.4 bits;  conditional E-value: 0.00061
      APG6_N  37 kekkeeekqdeeleeleeeleklekeeeelleeLkelekereeleaelaaleeelealeeeeerfwreynelqlelleleeeldsleaqyehaq 130
                 ++++e+   + +l+e++  ++ l++e  +l+ e + +    ++l++el+  + e+ ++ e++ + +++ n+ +++l+ l  el++ e  ++ ++
  KOO24060.1 143 ASTSEA---QAQLAESRAHVSGLHEEHTSLQHEYNHVLGMAQQLADELQRVRHEHGQVAEQKLALIERLNATEHTLSALRHELKQREDDFQVDL 233
                 443332...4688888888999999999999999999999999999999999999999999999999999999999999999999888888776 PP

  == domain 3  score: 11.8 bits;  conditional E-value: 0.00024
      APG6_N  49 leeleeeleklekeeeelleeLkelekereeleaelaaleeelealeeeeerfwreynelqlellele 116
                 ++e++ ++++l +e +++ +  +ele+   + e+ +a+le+e ++l +  e++  + + +++e  +l 
  KOO24060.1 240 DAETRASIDRLTAEGRTARARAEELETLPPRYEQRIAQLEAEIRQLRKVGEAHAARAQHFEVERGQLA 307
                 5778899*****************************************99999999888888766654 PP

  == domain 4  score: 1.6 bits;  conditional E-value: 0.34
      APG6_N  58 klekeeeelleeLkelekereeleaelaaleeelealeeeeerfwreynelqlellel 115
                 ++e++ ++ l    +le++ +el+a +++  + ++ lee   r  ++  + ql   ++
  KOO24060.1 327 RIERQDAKNLMLSHRLEATLKELQATIHERDRLSATLEEALMRCTSSLVARQLAEDDC 384
                 3444444444444555555555555555555555555555555555555555555555 PP

>> DUF1664  Protein of unknown function (DUF1664)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.4   0.0     0.032        36      66     102 ..      50      86 ..      49     106 .. 0.88
   2 ?   10.5   0.9   0.00043      0.48      58     121 ..     125     191 ..     113     194 .. 0.77
   3 ?    5.1   0.1     0.019        22      48     122 ..     206     280 ..     198     284 .. 0.92
   4 ?   -0.4   0.2      0.98   1.1e+03      55      87 ..     340     365 ..     315     394 .. 0.56

  Alignments for each domain:
  == domain 1  score: 4.4 bits;  conditional E-value: 0.032
     DUF1664  66 sridrvdkkldeqkeiskeikeevtevredlseiged 102
                 +ri  + ++l++ +e sk+  +ev+++r+++++++  
  KOO24060.1  50 ERIMLLKAQLEDATERSKAHIAEVDRLRDEVERLRGC 86 
                 6899999************************998865 PP

  == domain 2  score: 10.5 bits;  conditional E-value: 0.00043
     DUF1664  58 aatkrhLssridrvdk...kldeqkeiskeikeevtevredlseigedvesvkeaveglesklerie 121
                 +a+ +h +++++ vd+   +  e ++  +e +++v+ ++e+ ++++++ ++v  + ++l+ +l+r+ 
  KOO24060.1 125 HAQAQHATQQVAAVDAlraSTSEAQAQLAESRAHVSGLHEEHTSLQHEYNHVLGMAQQLADELQRVR 191
                 5666788888888876111455555555666789*****************************9986 PP

  == domain 3  score: 5.1 bits;  conditional E-value: 0.019
     DUF1664  48 kqleqvseslaatkrhLssridrvdkkldeqkeiskeikeevtevredlseigedvesvkeavegleskleriee 122
                 ++l+   ++l+a +++L++r d  +  l   ++  +e+++ ++++  + ++ +   e+++++    e++++++e+
  KOO24060.1 206 ERLNATEHTLSALRHELKQREDDFQVDLSLFAARDAETRASIDRLTAEGRTARARAEELETLPPRYEQRIAQLEA 280
                 568888999**********************************************99999999999999999985 PP

  == domain 4  score: -0.4 bits;  conditional E-value: 0.98
     DUF1664  55 eslaatkrhLssridrvdkkldeqkeiskeike 87 
                 + l+at ++L++ i        e  ++s+ ++e
  KOO24060.1 340 HRLEATLKELQATI-------HERDRLSATLEE 365
                 33333333333333.......333333333333 PP

>> BLOC1_2  Biogenesis of lysosome-related organelles complex-1 subunit 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.5   0.0      0.69   7.7e+02      52      78 ..      58      84 ..      52      92 .. 0.75
   2 ?   12.2   0.9   0.00015      0.17       5      69 ..     142     207 ..     138     226 .. 0.82
   3 ?    2.6   0.0      0.15   1.7e+02      62      79 ..     270     287 ..     237     309 .. 0.70
   4 ?    2.2   0.1      0.21   2.3e+02      69      93 ..     341     365 ..     320     368 .. 0.88

  Alignments for each domain:
  == domain 1  score: 0.5 bits;  conditional E-value: 0.69
     BLOC1_2 52 klnekyeelqpylqqidqiekqvteLe 78
                +l+   e  + ++ ++d++ ++v++L 
  KOO24060.1 58 QLEDATERSKAHIAEVDRLRDEVERLR 84
                455666677778888888888888774 PP

  == domain 2  score: 12.2 bits;  conditional E-value: 0.00015
     BLOC1_2   5 ekvskyleaeleatvedyklLeklNeaasekykklkdvaaslekkleklnekyeelqpy.lqqidq 69 
                  ++++  +a+l+ ++++++ L++ +++ +++y+ +  +a++l+++l++++ ++ +++++ l  i++
  KOO24060.1 142 RASTSEAQAQLAESRAHVSGLHEEHTSLQHEYNHVLGMAQQLADELQRVRHEHGQVAEQkLALIER 207
                 566677899******************************************999987761444444 PP

  == domain 3  score: 2.6 bits;  conditional E-value: 0.15
     BLOC1_2  62 pylqqidqiekqvteLee 79 
                  y q+i q+e+++++L +
  KOO24060.1 270 RYEQRIAQLEAEIRQLRK 287
                 466778888888887765 PP

  == domain 4  score: 2.2 bits;  conditional E-value: 0.21
     BLOC1_2  69 qiekqvteLeeavseLDeyskeLEa 93 
                 ++e++++eL++++ e D  s  LE+
  KOO24060.1 341 RLEATLKELQATIHERDRLSATLEE 365
                 6899999999999999999999997 PP

>> WD40_alt  Alternative WD40 repeat motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.0       4.8   5.4e+03      23      31 ..      18      26 ..      16      27 .. 0.87
   2 ?    0.8   0.1      0.41   4.6e+02      19      31 ..      69      84 ..      62      88 .. 0.71
   3 ?   -0.8   0.0       1.3   1.5e+03      17      30 ..     156     169 ..     152     171 .. 0.83
   4 ?    9.0   0.1    0.0011       1.2      19      33 ..     274     288 ..     270     290 .. 0.91

  Alignments for each domain:
  == domain 1  score: -2.6 bits;  conditional E-value: 4.8
    WD40_alt 23 LeeEVrtLr 31
                Le EV +Lr
  KOO24060.1 18 LEAEVLSLR 26
                99***9999 PP

  == domain 2  score: 0.8 bits;  conditional E-value: 0.41
    WD40_alt 19 rvse...LeeEVrtLr 31
                +++e   L +EV+ Lr
  KOO24060.1 69 HIAEvdrLRDEVERLR 84
                555433399****998 PP

  == domain 3  score: -0.8 bits;  conditional E-value: 1.3
    WD40_alt  17 kvrvseLeeEVrtL 30 
                 + +vs L eE  +L
  KOO24060.1 156 RAHVSGLHEEHTSL 169
                 789*******8777 PP

  == domain 4  score: 9.0 bits;  conditional E-value: 0.0011
    WD40_alt  19 rvseLeeEVrtLrKI 33 
                 r++ Le E+r LrK+
  KOO24060.1 274 RIAQLEAEIRQLRKV 288
                 9*************8 PP

>> GAS  Growth-arrest specific micro-tubule binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.5       1.1   1.2e+03      45      66 ..      11      32 ..       4      37 .. 0.53
   2 ?    5.4   0.3    0.0089        10      28      87 ..      52     110 ..      50     112 .. 0.87
   3 ?   13.7   8.6   2.6e-05     0.029      45     154 ..      96     205 ..      89     207 .. 0.85
   4 ?    9.9   4.4   0.00039      0.44      40     119 ..     185     265 ..     180     266 .. 0.89
   5 ?    2.8   7.4     0.056        62      53     161 ..     244     352 ..     241     381 .. 0.77

  Alignments for each domain:
  == domain 1  score: -1.3 bits;  conditional E-value: 1.1
         GAS 45 nekelseisqenkrlkepLkka 66
                 ++e +++++e  +l+++Lk+a
  KOO24060.1 11 EQREKNALEAEVLSLRQQLKRA 32
                4444444555555555555444 PP

  == domain 2  score: 5.4 bits;  conditional E-value: 0.0089
         GAS  28 IkslKeeieelkkkeernekelseisqenkrlkepLkkaeeeveeLrkqlknyekdkqsl 87 
                 I  lK ++e+  ++ +++  e++ +  e +rl+  L+  + e  +Lr +l++ + ++++l
  KOO24060.1  52 IMLLKAQLEDATERSKAHIAEVDRLRDEVERLRGCLNDHR-EPGQLRSELAHVRDERVRL 110
                 7789******************************999876.5688999999988888776 PP

  == domain 3  score: 13.7 bits;  conditional E-value: 2.6e-05
         GAS  45 nekelseisqenkrlkepLkkaeeeveeLrkqlknyekdkqslknlkarlkelekelkdlkwehevleqrfekvekerdelykkfeaaiqevqqktglk 143
                  + el+++  e  rl  +L +a++     ++q+++  ++ ++ ++l+a  +e++ +l + + +   l+++ ++++ e++ +    ++  +e+q     +
  KOO24060.1  96 LRSELAHVRDERVRLALELYEAKQAAVSAHAQAQHATQQVAAVDALRASTSEAQAQLAESRAHVSGLHEEHTSLQHEYNHVLGMAQQLADELQRVRHEH 194
                 567889999999999999999999999999999999999999999999999999999999999999999999999999988888888888888888888 PP

         GAS 144 nllLekklkal 154
                   + e+kl+ +
  KOO24060.1 195 GQVAEQKLALI 205
                 88888888755 PP

  == domain 4  score: 9.9 bits;  conditional E-value: 0.00039
         GAS  40 kkeernekelseisqenkrlkepLkkaeeeveeLrkqlknyekdkq.slknlkarlkelekelkdlkwehevleqrfekve 119
                  + +r + e  ++++++  l e L++ e+ +  Lr++lk+ e d+q +l    ar  e+   + +l+ e +  + r e++e
  KOO24060.1 185 DELQRVRHEHGQVAEQKLALIERLNATEHTLSALRHELKQREDDFQvDLSLFAARDAETRASIDRLTAEGRTARARAEELE 265
                 56788899999*********************************9747999999999999999999999999999988887 PP

  == domain 5  score: 2.8 bits;  conditional E-value: 0.056
         GAS  53 sqenkrlkepLkkaeeeveeLrkqlknyekdkqslknlkarlkelekelkdlkwehevleqrfekvekerdelykkfeaaiqevqqktglknllLekkl 151
                  +   rl+ + ++a++  eeL+    +ye+  ++l++  ++l+++ +   +  ++ ev + +++ + +  +   ++  a+  +  ++ + knl+L  +l
  KOO24060.1 244 RASIDRLTAEGRTARARAEELETLPPRYEQRIAQLEAEIRQLRKVGEAHAARAQHFEVERGQLAGLVEVSEIELRRNHASNADRIERQDAKNLMLSHRL 342
                 566778888888899999999999999999999999988888888888888888888888888888776666666666777777789999999999999 PP

         GAS 152 kalqeelEkk 161
                 +a  +el++ 
  KOO24060.1 343 EATLKELQAT 352
                 9998888764 PP

>> DUF948  Bacterial protein of unknown function (DUF948)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.4   0.0       1.3   1.4e+03      32      58 ..      56      82 ..      49      92 .. 0.54
   2 ?    0.8   0.2      0.53   5.9e+02      47      81 ..     115     149 ..      99     154 .. 0.76
   3 ?    6.1   1.5     0.011        13      26      74 ..     143     191 ..     112     224 .. 0.71
   4 ?    1.7   0.0      0.27     3e+02      40      65 ..     340     365 ..     325     394 .. 0.71

  Alignments for each domain:
  == domain 1  score: -0.4 bits;  conditional E-value: 1.3
      DUF948 32 aatieelekqvdpilkevedllakvne 58
                +a++e+ +++ ++ + ev++l ++v++
  KOO24060.1 56 KAQLEDATERSKAHIAEVDRLRDEVER 82
                344444444444444444444444444 PP

  == domain 2  score: 0.8 bits;  conditional E-value: 0.53
      DUF948  47 kevedllakvnelledvneklekvdplteavadlg 81 
                  e++++   + + ++  ++++++vd+l ++  ++ 
  KOO24060.1 115 YEAKQAAVSAHAQAQHATQQVAAVDALRASTSEAQ 149
                 57777777777778889999999998877766655 PP

  == domain 3  score: 6.1 bits;  conditional E-value: 0.011
      DUF948  26 ktldeaaatieelekqvdpilkevedllakvnelledvneklekvdplt 74 
                    +ea+a+++e + +v ++ +e + l ++ n +l   ++  ++++++ 
  KOO24060.1 143 ASTSEAQAQLAESRAHVSGLHEEHTSLQHEYNHVLGMAQQLADELQRVR 191
                 4555666666666666666666666666666665444444444444444 PP

  == domain 4  score: 1.7 bits;  conditional E-value: 0.27
      DUF948  40 kqvdpilkevedllakvnelledvne 65 
                 ++++++lke+++++++  +l + ++e
  KOO24060.1 340 HRLEATLKELQATIHERDRLSATLEE 365
                 45556666666666665555554444 PP

>> Kinesin_assoc  Kinesin-associated
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   1.9   0.00012      0.14      13     115 ..      74     189 ..      64     227 .. 0.63
   2 ?    0.6   0.6      0.49   5.5e+02      74     124 ..     319     370 ..     249     391 .. 0.52

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 0.00012
  Kinesin_assoc  13 relkeeverlkdlllaqglediidseaeplkeglvll.............aseraknlsavtaavaglspssslsalss..raesvssleerivfs 93 
                      l++everl+  l  +     + se +++++  v l             a+ +a+++++++aav +l++s+s++  +   + + vs l+e+   +
     KOO24060.1  74 DRLRDEVERLRGCLNDHREPGQLRSELAHVRDERVRLalelyeakqaavsAHAQAQHATQQVAAVDALRASTSEAQAQLaeSRAHVSGLHEEH--T 167
                    569***********9887766666677777775444457788888888887888888888889998888886544333222334556666554..3 PP

  Kinesin_assoc  94 paseeaierlketekiiaelne 115
                    + + e  + l +++++  el  
     KOO24060.1 168 SLQHEYNHVLGMAQQLADELQR 189
                    3333444444444444444433 PP

  == domain 2  score: 0.6 bits;  conditional E-value: 0.49
  Kinesin_assoc  74 salssraesvs.sleerivfspaseeaierlketekiiaelnetWeeklrkt 124
                      + s+a+ +  + +++++ s+  e +++ l+ t      l  t ee l + 
     KOO24060.1 319 RNHASNADRIErQDAKNLMLSHRLEATLKELQATIHERDRLSATLEEALMRC 370
                    2222233322202223444444445555555555555555555555555444 PP

>> Fib_alpha  Fibrinogen alpha/beta chain family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.0       3.7   4.1e+03      40      64 ..      55      79 ..      49     101 .. 0.60
   2 ?    3.1   2.0     0.088        99      36     111 ..     137     212 ..     123     231 .. 0.64
   3 ?    7.7   0.2    0.0034       3.8      31     123 ..     209     301 ..     201     307 .. 0.80
   4 ?    1.8   0.2      0.23   2.6e+02      31      82 ..     340     391 ..     317     401 .. 0.78

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 3.7
                CCCCCCCCCCHHHHHHHHHHHHHHH CS
   Fib_alpha 40 leneleeisnstkeaeelvkeikds 64
                l+ +le++++++k     v +++d 
  KOO24060.1 55 LKAQLEDATERSKAHIAEVDRLRDE 79
                5555555555555444444444443 PP

  == domain 2  score: 3.1 bits;  conditional E-value: 0.088
                 HHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCH.HHHHHHHHHH CS
   Fib_alpha  36 dlekleneleeisnstkeaeelvkeikdslrekqkskkdndnvikksskeleeeilrlketidaqe.snirvLqnvl 111
                  ++ l+ + +e++ +  e++ +v+ +++ +++ q+++++   + +++++el+ ++   + ++ +q    i+ L  + 
  KOO24060.1 137 AVDALRASTSEAQAQLAESRAHVSGLHEEHTSLQHEYNHVLGMAQQLADELQ-RVRHEHGQVAEQKlALIERLNATE 212
                 5777888888888888888888888888888888888877777788888777.665555666555545555544332 PP

  == domain 3  score: 7.7 bits;  conditional E-value: 0.0034
                 CCCCHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHH CS
   Fib_alpha  31 kdvkkdlekleneleeisnstkeaeelvkeikdslrekqkskkdndnvikksskeleeeilrlketidaqesnirvLqnvlesneqkiqkLeq 123
                 + ++++l+ l++el++ ++  +   +l  + +  +r+     + + ++ +  ++ele+   r++++i + e +ir+L++v e+   + q+ e+
  KOO24060.1 209 NATEHTLSALRHELKQREDDFQVDLSLFAARDAETRASIDRLTAEGRTARARAEELETLPPRYEQRIAQLEAEIRQLRKVGEAHAARAQHFEV 301
                 5667788888888888888888777777777777777777777778888899999**9999******************99998888887776 PP

  == domain 4  score: 1.8 bits;  conditional E-value: 0.23
                 CCCCHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
   Fib_alpha  31 kdvkkdlekleneleeisnstkeaeelvkeikdslrekqkskkdndnvikks 82 
                 + ++ +l++l+ +++e  + + + ee   + ++sl ++q  ++d + +++++
  KOO24060.1 340 HRLEATLKELQATIHERDRLSATLEEALMRCTSSLVARQLAEDDCKAALRQL 391
                 4567788888888888888888888888888888888888777766666665 PP

>> CALCOCO1  Calcium binding and coiled-coil domain (CALCOCO1) like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.7  13.9    0.0006      0.67     128     245 ..      49     165 ..       4     174 .. 0.82
   2 ?    3.9   7.7     0.017        19     180     262 ..     141     224 ..     137     226 .. 0.76
   3 ?    1.9  15.6     0.071        79      58     197 ..     226     366 ..     220     399 .. 0.66

  Alignments for each domain:
  == domain 1  score: 8.7 bits;  conditional E-value: 0.0006
    CALCOCO1 128 earirELEeDiktltqralekEteLeRlkerakkalaqrkeeeaerkqlqakleqseeelrslskelqelrnslaerdtqvlqLqdtittltqkLttAq 226
                   ri  L    +  t+r+  + +e++Rl+++++++   + + + e  ql+++l + ++e  +l+ el e+++     ++q+++  ++++ +    ++  
  KOO24060.1  49 GERIMLLKAQLEDATERSKAHIAEVDRLRDEVERLRGCLND-HREPGQLRSELAHVRDERVRLALELYEAKQAAVSAHAQAQHATQQVAAVDALRASTS 146
                 57888889999999*********************999976.56889*************************999999999999998888777666666 PP

    CALCOCO1 227 rkeaenEallkelrslqer 245
                   +a+  ++++ +++l+e 
  KOO24060.1 147 EAQAQLAESRAHVSGLHEE 165
                 6666666666666666665 PP

  == domain 2  score: 3.9 bits;  conditional E-value: 0.017
    CALCOCO1 180 leqseeelrslskelqelrnslaerdtqvlqLqdtittltqkLttA.qrkeaenEallkelrslqerlaaSerkvegLkeeLss 262
                 l++s +e +   +e +   + l+e +t++++  +++  + q+L++  qr   e+ ++ ++  +l erl+a e++  +L++eL++
  KOO24060.1 141 LRASTSEAQAQLAESRAHVSGLHEEHTSLQHEYNHVLGMAQQLADElQRVRHEHGQVAEQKLALIERLNATEHTLSALRHELKQ 224
                 566666766666666666777788888888888888888888875515556788899999999999999999999999999975 PP

  == domain 3  score: 1.9 bits;  conditional E-value: 0.071
    CALCOCO1  58 ekekeeykrdreeldrerkelesrveelkeelkesrekveeleekqkelerlseelaeeksalleakeesearirELEeDiktltqralekEteLeRlk 156
                 e +   ++ d + +  + +e + ++++l +e +++r   eele+     e+  ++l +e ++l +  e++ ar +  E +   l+  +   E+eL+R +
  KOO24060.1 226 EDD---FQVDLSLFAARDAETRASIDRLTAEGRTARARAEELETLPPRYEQRIAQLEAEIRQLRKVGEAHAARAQHFEVERGQLAGLVEVSEIELRRNH 321
                 433...777777888888899999999999999999999999998888888888899999999999999999999999999999999999999998865 PP

    CALCOCO1 157 e.rakkalaqrkeeeaer...kqlqakleqseeelrslskelqel 197
                   +a ++ +q   +       ++  ++l+++ +e  +ls+ l+e+
  KOO24060.1 322 AsNADRIERQDAKNLMLShrlEATLKELQATIHERDRLSATLEEA 366
                 312334444433332222001222234555555555555555443 PP

>> Atg14  Vacuolar sorting 38 and autophagy-related subunit 14
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.1   5.6    0.0022       2.5      27     173 ..      25     164 ..       4     179 .. 0.64
   2 ?    4.6   5.2     0.013        15      21     100 ..     149     225 ..     141     242 .. 0.85
   3 ?    7.5   7.9    0.0017         2      26     160 ..     242     374 ..     237     396 .. 0.85

  Alignments for each domain:
  == domain 1  score: 7.1 bits;  conditional E-value: 0.0022
       Atg14  27 lrerlaklksekeslkkkiekalegkeeaeqledkiknkkakleelksliadlrerlqelkdklsqlkkeieekkkklaklsdklk...kRrsdleslq 122
                 lr++l++   +k  ++   + a+eg        ++i+ +ka+le+   ++    +++ +l+d +++l+  +++ ++   +l+++l+   + r +l++  
  KOO24060.1  25 LRQQLKRASPRKVGFGDGADGAVEG--------ERIMLLKAQLEDATERSKAHIAEVDRLRDEVERLRGCLNDHREP-GQLRSELAhvrDERVRLALEL 114
                 3333333333333333333333333........44777777777777777777777777777777777777777764.344445554335555566666 PP

       Atg14 123 neleerrkkqiaklqdaikrieqklsslssktlesrsslcselaklyglrr 173
                 +e +++  +  a+ q+a+++++ + ++l+ +t e++++l++  a ++gl +
  KOO24060.1 115 YEAKQAAVSAHAQAQHATQQVAAV-DALRASTSEAQAQLAESRAHVSGLHE 164
                 777777777777777777777777.89999999999999999999999977 PP

  == domain 2  score: 4.6 bits;  conditional E-value: 0.013
       Atg14  21 perlyelrerlaklksekeslkkkiekalegkeeaeqledkiknkkakleelksliadlrerlqelkdklsqlkkeieek 100
                 + +l e r  +  l +e+ sl+ +++  l   +   ql+d++++ +    +   ++  l erl+  +++ls l+ e++++
  KOO24060.1 149 QAQLAESRAHVSGLHEEHTSLQHEYNHVLGMAQ---QLADELQRVRHEHGQVAEQKLALIERLNATEHTLSALRHELKQR 225
                 458999999999999999999999999999999...99999999999999999999999999999999999999998876 PP

  == domain 3  score: 7.5 bits;  conditional E-value: 0.0017
       Atg14  26 elrerlaklksekeslkkkiekalegkeeaeqledkiknkkakleelksliadlrerlqelkdklsqlkkeieekkkklaklsdklkkRrsdleslqne 124
                 e r  + +l +e  + + + e++++ +    + e++i ++ a +++l++  +   +r q  +  + ql   +e    +l+++ +++++R ++ ++ + +
  KOO24060.1 242 ETRASIDRLTAEGRTARARAEELETLPP---RYEQRIAQLEAEIRQLRKVGEAHAARAQHFEVERGQLAGLVEVSEIELRRNHASNADRIERQDAKNLM 337
                 5677788999999999999999999988...999*******************************************************9999999*** PP

       Atg14 125 leerrkkqiaklqdaikrieqklsslssktles.rss 160
                 l+ r ++ +++lq +i++ ++  ++l+  ++   +s 
  KOO24060.1 338 LSHRLEATLKELQATIHERDRLSATLEEALMRCtSSL 374
                 ****************966666555555555542223 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (405 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2003  (0.111718); expected 358.6 (0.02)
Passed bias filter:                      659  (0.0367561); expected 358.6 (0.02)
Passed Vit filter:                        84  (0.00468515); expected 17.9 (0.001)
Passed Fwd filter:                        48  (0.00267723); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              16  [number of targets reported over threshold]
# CPU time: 1.15u 0.31s 00:00:01.46 Elapsed: 00:00:00.55
# Mc/sec: 2214.67
//
Query:       KOO24061.1  [L=1209]
Description: baculoviral iap repeat-containing protein 6 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.7e-53  181.6   0.0    7.8e-30  104.1   0.0    2.2  2  Ufd2P_core  Ubiquitin elongating factor core
    1.8e-18   66.6   0.0    3.3e-18   65.7   0.0    1.4  1  UQ_con      Ubiquitin-conjugating enzyme
    6.6e-05   22.8   0.0    0.00012   21.9   0.0    1.3  1  UEV         UEV domain


Domain annotation for each model (and alignments):
>> Ufd2P_core  Ubiquitin elongating factor core
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   75.1   0.0   7.8e-25   4.7e-21      36     264 ..     235     526 ..     215     538 .. 0.75
   2 !  104.1   0.0   1.3e-33   7.8e-30     374     606 ..     553     834 ..     547     853 .. 0.90

  Alignments for each domain:
  == domain 1  score: 75.1 bits;  conditional E-value: 7.8e-25
                 H..HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHT-GGGGSSS.--GG....GS--HHHHHHHHHHHHHHHGGGGST.T-TT..... CS
  Ufd2P_core  36 s..tysslrqelktiqenlveiiknllkassesRervlkwlakilnlNekrakiq.vdps....kvssdgfmlNllavLlrLcepflda.tfsk..... 121
                    t ++++ ++  +q++l +++ + + ++++s+ ++l+w+a+++ + e       +dp+    +  sd+ ++Nl++vLl+Lcepfld+ + ++     
  KOO24061.1 235 DlpTLEQIQGDVTAMQTQLRQLLTAAFLKDNDSKVAFLEWIAAVITACELALPPPnADPRralaTRPSDACVINLSVVLLQLCEPFLDNgSTERtgkgh 333
                 145899*****************99988888****************99887654488889999***********************664444366789 PP

                 ..GGGS-TTTTSS..-SSS--.TT--BSSB........................................-HHHHHHHHHHCTTS...........--- CS
  Ufd2P_core 122 ..idkidpnylllp.skrldl.kdetrlna........................................deeeveefyeqkeke...........kpn 165
                   ++++d + + ++ + r  + k +    a                                                      +           + +
  KOO24061.1 334 dgMTRFDAKWFDRElERRATNpKAQAAHRAhrcrrmleetpatappsaaapsgssadvtmaepgvaaavrP-------------AeavttaeakklEFH 419
                 99*********885555554424444444466666666666666877777777666555555544443321.............03333333445689* PP

                 HHHHHHHHHHHHHHHTHHHHHHHHHTHHHHHHHHHHHHH.HHTT-HHHHHHHHHHHH...HHHHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHHHHHH CS
  Ufd2P_core 166 FiteiFfltlkalhlglkpaisefkrllqelkrlqdele.eleaeaaqleeqlkklk...kelekllseklaleavlldpellqellkFlrlvaawllr 260
                 F+te+Ffl++ alh+g+ pa+++ +rl+ +l+r    l  ++   +++++e l+ l+    +l   + + la++ +   p l++ + kF+ l+aaw+++
  KOO24061.1 420 FVTECFFLAMGALHVGIYPALDTAQRLADTLHRKLPPLPpNAP--HSAFQEGLAALRaagPALLGAQGQLLAYRLLAEAPPLITLMGKFVGLTAAWIVD 516
                 ********************************99998874333..56667777777622244557799*****************************98 PP

                 HH......ST CS
  Ufd2P_core 261 va......dp 264
                  +      d+
  KOO24061.1 517 TLyvlvslDE 526
                 5544555533 PP

  == domain 2  score: 104.1 bits;  conditional E-value: 1.3e-33
                 HCCHHHHHHHHHHHCCCT-SSSSSTCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHSHH....................................... CS
  Ufd2P_core 374 kkhLlkaLlkfYidvEktgqssqFydKfniRyniseilkslwknesyrnqltklakenee....................................... 433
                  + L + +l++Y++   ++ s+  +dK + Ry ++++l+ lw+n+s  + +++ a  +++                                       
  KOO24061.1 553 AEALQPPMLSLYVELGLHTNSEAVTDKNSQRYLLMKVLRRLWQNPSNWATFVRVAAAANDapssaagegalpgaakggsaaasassadaaaverqvsga 651
                 57788899**************************************99777777777777777777777777777777777777777777777777777 PP

                 .......HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---....-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH..-GGGGCS. CS
  Ufd2P_core 434 .......lFvrFinlllNDvtflldealskLkeikelqeeledqeewsslseeerqekeesleqlerqaksylqlanetvkllklltke..ipepflt. 522
                         F +F+  l+ +  flld+al +L+++k+++ e++d+++w+++++  r+++e +l++  r+aks+l l++++++ l llt+e  + ++f++ 
  KOO24061.1 652 aadadhtWFGEFATTLVKENLFLLDDALGRLADVKKREAEKADEAAWNAQPAHLRRDREARLDSVRRTAKSFLDLGKASLSALLLLTSEplVGTAFTHv 750
                 7888889********************************************************************************886689****** PP

                 HHHHHHHHHHHHHHHHHHHSHHHHT---SSGGGGT--HHHHHHHHHHHHHHCTT-.HHHHHHHHH-TTT--HHHHHHHHHHHTTS CS
  Ufd2P_core 523 peivdrlaamLnynLdqLvGpkcknLkVknpekynFrPkelLssiveiYlnLske.eeFvkavakDgRsYkkelFekavrilkre 606
                 p  + + a mL  +L  L Gp    L+V n ek ++ P++lLs+ + + l+ ++  + Fv+++ + +  Y+ +++e+a r l  +
  KOO24061.1 751 PQRAHKMAGMLLEFLRRLSGPDTAALNVTNREKLGWYPRQLLSDTMVLLLQCKQLaDHFVDELREAD-AYDLSVLERAHRLLADK 834
                 ****************************************************8889******97766.9**********999876 PP

>> UQ_con  Ubiquitin-conjugating enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.7   0.0   5.5e-22   3.3e-18      22     137 ..     953    1093 ..     938    1096 .. 0.84

  Alignments for each domain:
  == domain 1  score: 65.7 bits;  conditional E-value: 5.5e-22
                  EETTEECEEEEEEEB........TTSTTTTEEEEEEEE--TTTTTS--EEEESS.....T-SCTTBETTSBB-CGGGSTTT...--T.T.....SHH CS
      UQ_con   22 vddenlfewkvlikgp.......edtpYeggvFklelefpedYPlkpPkvkfvt.....kifHPnvdksGevcldiLkeek...Wsp.a.....ltl 97  
                  vd+++ + +kvli gp       ++tpY+ g+F++++ +p+dYP  pP v+++t       f+Pn++++G+vcl++L +++   W+p +     +tl
  KOO24061.1  953 VDESRTDVLKVLISGPadlhdrsRETPYALGLFEFHIFVPNDYPQVPPLVNLQTtgdgmVRFNPNLYSDGKVCLSLLGTWHgegWTPpSgsnmgSTL 1049
                  3446888899999998333333346****************************9999999******************9999999984233334699 PP

                  HHHHHHHHHHH..HS-.-TTS-SSHHHHHHHHHT.HHHHHHHHH CS
      UQ_con   98 esvllsiqsLl..aep.npesplnkeaakllkkd.reeykkkvk 137 
                   +vl+siqs++  ++p  +e ++  e ++   ++ ++ey+++++
  KOO24061.1 1050 LQVLVSIQSIImvSKPyFNEPGYADEEGTPAGEQrSREYNEHIR 1093
                  *********88779998888889999999999988899999886 PP

>> UEV  UEV domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.9   0.0     2e-08   0.00012      53     100 ..     988    1035 ..     958    1065 .. 0.86

  Alignments for each domain:
  == domain 1  score: 21.9 bits;  conditional E-value: 2e-08
                  EEE--TTTTTS--EEEE-GCC--TSGGGGGB-TTSBB--HHHHS--TT CS
         UEV   53 liwvlesyPveaPivyvkptksmvikknenvdaqGlvylpyLeeWkre 100 
                  +i+v+++yP+ +P+v ++ t + +++ n n+ ++G+v l +L  W+ e
  KOO24061.1  988 HIFVPNDYPQVPPLVNLQTTGDGMVRFNPNLYSDGKVCLSLLGTWHGE 1035
                  79*******************************************984 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1209 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       572  (0.0319036); expected 358.6 (0.02)
Passed bias filter:                      360  (0.0200792); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.80u 0.29s 00:00:01.09 Elapsed: 00:00:00.49
# Mc/sec: 7478.49
//
Query:       KOO24062.1  [L=267]
Description: hypothetical protein Ctob_007624 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.7e-06   28.0   1.7    3.3e-06   27.1   1.7    1.5  1  WW        WW domain
  ------ inclusion threshold ------
        3.2    7.5   9.5       0.33   10.7   5.1    1.6  2  Pox_Ag35  Pox virus Ag35 surface protein
        7.9    6.1   5.7         11    5.6   5.7    1.2  1  FAM176    FAM176 family


Domain annotation for each model (and alignments):
>> WW  WW domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.1   1.7   5.5e-10   3.3e-06       5      31 .]     192     217 ..     190     217 .. 0.97

  Alignments for each domain:
  == domain 1  score: 27.1 bits;  conditional E-value: 5.5e-10
                 EEEEE-TTTT-EEEEETTT--EESS-- CS
          WW   5 WeeqwdpdsGrvYYyNheTgetqWekP 31 
                 W e+++p  G  Y+yN+ Tg t+W+kP
  KOO24062.1 192 WGEHVTPG-GIRYWYNTMTGITSWDKP 217
                 99******.*****************9 PP

>> Pox_Ag35  Pox virus Ag35 surface protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.1      0.67     4e+03      43      69 ..      20      46 ..      14      63 .. 0.72
   2 ?   10.7   5.1   5.5e-05      0.33      58     107 ..     119     170 ..      93     190 .. 0.57

  Alignments for each domain:
  == domain 1  score: -2.6 bits;  conditional E-value: 0.67
    Pox_Ag35 43 DieiPspkqekkkrattprkkpakkek 69
                D+  P+ k e++  +++p++ ++++e 
  KOO24062.1 20 DLAAPTSKPEETPAPSAPQQFAPLPET 46
                888887887888888888887766655 PP

  == domain 2  score: 10.7 bits;  conditional E-value: 5.5e-05
    Pox_Ag35  58 ttprkkpakkekkkkeeekeeaaeeeel..edseedeenendedeseesvqa 107
                 ++p+++ a ++ ++  ++ + a++++e+  +d+ee+e++++ +d+ + + ++
  KOO24062.1 119 SAPKRPKAEESMQQGAKKPKIAKKKREVksDDDEEEEDESKGQDDIPMEERI 170
                 5777765555444444444444444444114444455555555555444333 PP

>> FAM176  FAM176 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.6   5.7    0.0019        11      51      91 ..     134     173 ..     121     191 .. 0.43

  Alignments for each domain:
  == domain 1  score: 5.6 bits;  conditional E-value: 0.0019
      FAM176  51 lerlkkkkkklkeesekasededeeeeeeeedsseseaeee 91 
                 ++++k +kkk++ +s +++e+e++e++ +++  +e+++ ++
  KOO24062.1 134 AKKPKIAKKKREVKS-DDDEEEEDESKGQDDIPMEERIASR 173
                 222222222222222.2233333333333333333333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (267 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1140  (0.0635841); expected 358.6 (0.02)
Passed bias filter:                      684  (0.0381505); expected 358.6 (0.02)
Passed Vit filter:                        92  (0.00513135); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.52u 0.26s 00:00:00.78 Elapsed: 00:00:00.41
# Mc/sec: 1947.04
//
Query:       KOO24063.1  [L=507]
Description: hypothetical protein Ctob_007627 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    0.00074   18.1 104.3    0.00096   17.8  80.4    2.1  2  TPH       Trichohyalin-plectin-homology domain


Domain annotation for each model (and alignments):
>> TPH  Trichohyalin-plectin-homology domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.4  17.8    0.0006        11     267     341 ..     157     231 ..     151     238 .. 0.79
   2 !   17.8  80.4   5.3e-08   0.00096      79     309 ..     240     471 ..     231     477 .. 0.85

  Alignments for each domain:
  == domain 1  score: 4.4 bits;  conditional E-value: 0.0006
         TPH 267 lrkqaedeekeqeeaekrrekrlehrrelekqieereeqreaereeeleegealreeeeerrerieeerqklLke 341
                 + ++a++  + q++ + +++ ++ +r  +  q+   +++ +ae++ ++ee+++ ++  + +++  ++e++k+L +
  KOO24063.1 157 MHRNAFYNIEMQRKVAAKEQEKQTLRTHVYHQMSLEQHKTAAEKALMEEEARQVAADLALYERDMAQEKAKKLAK 231
                 556677777778888888888888888888888888888888888888888888888888888888888888877 PP

  == domain 2  score: 17.8 bits;  conditional E-value: 5.3e-08
         TPH  79 eeQieereqkrqeeeeekleEkeqldeivekieeedeaeaeekkekqkelreeldefneeqkerkekekeeekeederileylkekeereeereaerke 177
                  +Q+ e+ ++   +++ ++ E e++d+ ++k+ e d +++e+k++ ++e+++  + +n + k+r+e+ek+   +e+ ++ ++ k +  ++e+ +  + +
  KOO24063.1 240 AAQMREQAARAAAAQRLQKLEDEEMDAFLRKELEADSKRKEAKQRANEEYHKATMLANVAAKARREEEKQSLWAEEAKLNAQWKTMLDKQEADRNAQYA 338
                 68********************************************************************99999999888877777777666666666 PP

         TPH 178 keeekereiarlraqqekaedekaer.delraklaqeeaerkwrqkereeaekkarqreelkeareeqvelkerrlaeeaereeeefervlrkqaedee 275
                   +e+ ++++r  ++ + a+ e++ + +e  + ++ e++e+  +++ +++++k++ + ++  +  + q+  k++++ e ++r++e++ +vl++ a +  
  KOO24063.1 339 GLRERIHKMQRAYENSAGADLERRIKeEEEANARYVEAHEKMLDEQFAAKKKKREDDIQANLAFLKMQQSIKQHAKVEDQKRDREYAAEVLKDVALAHS 437
                 666666666665444444443333330333456799999999998888888888888888888899999****************************** PP

         TPH 276 keqeeaekrrekrlehrrelekqieereeqreae 309
                 +e+++ + r+++  +  + l++qi e++eq++++
  KOO24063.1 438 QEEQKIALRKARLSQQTAHLHQQITEQKEQKARD 471
                 *******************************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (507 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      3263  (0.181996); expected 358.6 (0.02)
Passed bias filter:                      446  (0.0248759); expected 358.6 (0.02)
Passed Vit filter:                        69  (0.00384851); expected 17.9 (0.001)
Passed Fwd filter:                        14  (0.000780858); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.86u 0.27s 00:00:01.12 Elapsed: 00:00:00.47
# Mc/sec: 3216.58
//
Query:       KOO24064.1  [L=495]
Description: hypothetical protein Ctob_007626 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.7e-07   31.2   0.0     0.0018   18.1   0.0    3.2  3  Peptidase_M10  Matrixin
      0.009   16.2   0.3        0.1   12.8   0.1    2.3  2  Reprolysin_5   Metallo-peptidase family M12
  ------ inclusion threshold ------
      0.066   12.8   0.7       0.11   12.1   0.0    1.6  2  Reprolysin_4   Metallo-peptidase family M12B Reprolysin-like
       0.14   10.8   0.2       0.23   10.0   0.2    1.2  1  Metallopep     Putative peptidase family
       0.16   11.7   0.0       0.29   10.8   0.0    1.3  1  DUF5435        Family of unknown function (DUF5435)


Domain annotation for each model (and alignments):
>> Peptidase_M10  Matrixin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.5   0.0    0.0078        28      28      47 ..       2      22 ..       1      27 [. 0.86
   2 !   18.1   0.0     5e-07    0.0018     105     129 ..     236     260 ..      41     277 .. 0.79
   3 !    5.1   0.0    0.0052        19     130     157 ..     316     343 ..     311     344 .. 0.91

  Alignments for each domain:
  == domain 1  score: 4.5 bits;  conditional E-value: 0.0078
                   HHHHHHHHTTSS.SEEEEESS CS
                   xxxxxxxxxxxx.xxxxxxxx RF
  Peptidase_M10 28 rrAfkvwsevtp.lkFtevkk 47
                   +rAf+vws+  p ++Ftev++
     KOO24064.1  2 HRAFDVWSQNHPmISFTEVTQ 22
                   79*********9899**9964 PP

  == domain 2  score: 18.1 bits;  conditional E-value: 5e-07
                    SSEEHHHHHHHHHHHHTTBESXSST CS
                    xxxxxxxxxxxxxxxxxxxxxxxxx RF
  Peptidase_M10 105 qgvslflVaaHEiGHalGLeHssdk 129
                    + ++++  aaHEiGH+lG++H +  
     KOO24064.1 236 ECYDFEAAAAHEIGHLLGISHPDTG 260
                    678999***************7765 PP

  == domain 3  score: 5.1 bits;  conditional E-value: 0.0052
                    TSTTSSSCTXTTTXSSXHHHHHHHHHHH CS
                    xxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Peptidase_M10 130 dalmyplykeekkvrlskdDvkgiqelY 157
                     +lm ++ +++ +v ls+dD +g+ +lY
     KOO24064.1 316 LSLMEAFTSHNPSVCLSQDDYEGLLTLY 343
                    589****99****************999 PP

>> Reprolysin_5  Metallo-peptidase family M12
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.6   0.0      0.15   5.3e+02     103     128 ..      97     122 ..      93     141 .. 0.78
   2 !   12.8   0.1   2.8e-05       0.1     145     165 ..     243     280 ..     226     299 .. 0.67

  Alignments for each domain:
  == domain 1  score: 0.6 bits;  conditional E-value: 0.15
  Reprolysin_5 103 nfsggvGlAwlgqlcnsgsagsvstr 128
                   +++g+v  A++g +c+  +++ +s+ 
    KOO24064.1  97 TTGGTVEFAYAGDMCWYLDSAFCSNF 122
                   4555699***********99999965 PP

  == domain 2  score: 12.8 bits;  conditional E-value: 2.8e-05
  Reprolysin_5 145 vvaHElGHnfGavHDcdsss.................e 165
                   + aHE+GH +G +H  ++++                  
    KOO24064.1 243 AAAHEIGHLLGISHPDTGTTelqsgywrtgqnsystlL 280
                   579***********777665454455555443322222 PP

>> Reprolysin_4  Metallo-peptidase family M12B Reprolysin-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   3.2e-05      0.11     139     177 ..     244     284 ..     234     298 .. 0.64
   2 ?   -3.1   0.1       1.4   4.9e+03      85     116 ..     449     482 ..     425     493 .. 0.49

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 3.2e-05
  Reprolysin_4 139 fAHEiGHtfGaaHdlsdegeglsskt...eegsgqtIMsyas 177
                    AHEiGH +G+ H      e l s +    ++s +t++s +s
    KOO24064.1 244 AAHEIGHLLGISHPDTGTTE-LQSGYwrtGQNSYSTLLSSGS 284
                   7************8775444.222222225555555555555 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 1.4
  Reprolysin_4  85 strdskdyDla..allrdtrasqqnvgvawvgal 116
                   +tr  +++ +a   +  + r + +   va +++ 
    KOO24064.1 449 ATRQDAEAEVAaaKIQAMKRGNADRAKVAVIKQH 482
                   3333333333300344444455555555555554 PP

>> Metallopep  Putative peptidase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   0.2   6.3e-05      0.23     308     334 ..     235     260 ..     232     270 .. 0.82

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 6.3e-05
  Metallopep 308 wealaitlGAflHEiGHllglpHqedG 334
                 we++     A+ HEiGHllg+ H   G
  KOO24064.1 235 WECYDFEA-AAAHEIGHLLGISHPDTG 260
                 77777654.788***********8776 PP

>> DUF5435  Family of unknown function (DUF5435)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   8.2e-05      0.29      58     116 ..     403     459 ..     372     469 .. 0.75

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 8.2e-05
     DUF5435  58 ydkvafppsawqgparvspygyesdseneeytrissaslsnvltesltttqddtanrcs 116
                    v    s+ +gparv+py     se  + +  s+a+ s   ++ +t+t++d+ ++++
  KOO24064.1 403 AAAVKVIKSTKKGPARVAPYASVVASE--DASSGSAAAKSSTGAKPPTATRQDAEAEVA 459
                 45677778999********98777666..556778888888889999999877766554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (495 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       824  (0.0459591); expected 358.6 (0.02)
Passed bias filter:                      503  (0.0280551); expected 358.6 (0.02)
Passed Vit filter:                        62  (0.00345808); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.55u 0.26s 00:00:00.81 Elapsed: 00:00:00.40
# Mc/sec: 3695.89
//
Query:       KOO24065.1  [L=241]
Description: hypothetical protein Ctob_007625 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (241 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       617  (0.0344135); expected 358.6 (0.02)
Passed bias filter:                      493  (0.0274974); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.44u 0.25s 00:00:00.69 Elapsed: 00:00:00.41
# Mc/sec: 1757.40
//
Query:       KOO24066.1  [L=254]
Description: mitochondrial uncoupling protein 3 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.7e-37  125.5   0.1    6.3e-16   58.1   0.0    3.1  3  Mito_carr  Mitochondrial carrier protein


Domain annotation for each model (and alignments):
>> Mito_carr  Mitochondrial carrier protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.9   0.0     6e-08    0.0011      47      89 ..       4      46 ..       1      52 [. 0.89
   2 !   58.1   0.0   3.5e-20   6.3e-16       4      91 ..      67     155 ..      64     159 .. 0.95
   3 !   45.3   0.0   3.5e-16   6.3e-12       5      92 ..     167     251 ..     164     254 .] 0.90

  Alignments for each domain:
  == domain 1  score: 18.9 bits;  conditional E-value: 6e-08
                SHHHHHHHHHHHHHHHGGGTTHHHHHHHHHHHHHHHHHHHHHH CS
   Mito_carr 47 aildvlkkiykeeGlrglyrGllpnllrvapasalkfvlyetl 89
                + +d++ ++y+ +G+rgl rGl+  ++r +  +a++ +l e +
  KOO24066.1  4 GWMDAVVQTYRADGVRGLQRGLSLGIMREVCFNAVRIGLLEPV 46
                579********************************99998755 PP

  == domain 2  score: 58.1 bits;  conditional E-value: 3.5e-20
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSTTTSCSS.HHHHHHHHHHHHHHHGGGTTHHHHHHHHHHHHHHHHHHHHHHHH CS
   Mito_carr   4 svlkellaGglagavatlvttPldvvKtrlqtqkksskksksaa.ildvlkkiykeeGlrglyrGllpnllrvapasalkfvlyetlkr 91 
                 s+ ++l+aG+++ga+++++++P++++Ktr+q++++ +  ++s++  l++l +++++eG++g ++G++++ lr +   + ++++y  +kr
  KOO24066.1  67 SPPERLAAGLTCGALGGCCVNPVEILKTRFQASGGLTGFQHSYQwPLSALTQLLRDEGVSGAFKGVGVSTLRGILGPGSQVFAYGEFKR 155
                 67899*******************************999999999*****************************************998 PP

  == domain 3  score: 45.3 bits;  conditional E-value: 3.5e-16
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSTTTSCSSHHHHHHHHHHHHHHHGGGTTHHHHHHHHHHHHHHHHHHHHHHHHH CS
   Mito_carr   5 vlkellaGglagavatlvttPldvvKtrlqtqkksskksksaaildvlkkiykeeGlrglyrGllpnllrvapasalkfvlyetlkrl 92 
                 vl ++l+++++++v++ +++P+dv +trl +++    +s+   +  + + i   eG+ ++y+G+l  +lr  p  +l f++ e++k+l
  KOO24066.1 167 VLTHILCALASASVSVACVNPVDVTRTRLYNAPPGRYSSG---VDAAWQVIASGEGVGSFYKGALTHFLRLGPHMVLVFAILEQMKKL 251
                 7899******************************998877...44555667789********************************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (254 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       328  (0.0182944); expected 358.6 (0.02)
Passed bias filter:                      282  (0.0157287); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.24s 00:00:00.64 Elapsed: 00:00:00.38
# Mc/sec: 1979.44
//
Query:       KOO24067.1  [L=216]
Description: hypothetical protein Ctob_007622 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
     0.0053   17.0   0.6     0.0085   16.3   0.6    1.3  1  dCMP_cyt_deam_2  Cytidine and deoxycytidylate deaminase zinc-
  ------ inclusion threshold ------
       0.03   14.1   0.0      0.057   13.2   0.0    1.5  1  TMEM132D_C       Mature oligodendrocyte transmembrane protein


Domain annotation for each model (and alignments):
>> dCMP_cyt_deam_2  Cytidine and deoxycytidylate deaminase zinc-binding region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.6   9.5e-07    0.0085      22      78 ..     122     182 ..     101     188 .. 0.65

  Alignments for each domain:
  == domain 1  score: 16.3 bits;  conditional E-value: 9.5e-07
                      -BTS----------............S-HHHHHHHHHHTT-B-TTT---EEEEEEETTS-E CS
  dCMP_cyt_deam_2  22 llleerdnklalkaeeeaeeek....ddelkeaAlaaanasyapyskcpsGvaLvtkdgkv 78 
                        ++++ ++l+ k ++++ e      ++e++++Al+aa ++y+  + +p +va+  k g+ 
       KOO24067.1 122 YKIDQHAARLTDKVKSKSFEAYevasKSEAAAKALDAASKAYVATTTAPLAVAVAAKGGEL 182
                      34444444444333333322225666788*************************9998875 PP

>> TMEM132D_C  Mature oligodendrocyte transmembrane protein, TMEM132D, C-term
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.0   6.4e-06     0.057      35      50 ..      86     101 ..      55     110 .. 0.81

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 6.4e-06
  TMEM132D_C  35 mYaLlgvfClAilvfl 50 
                  YaL++vfC+A+++++
  KOO24067.1  86 WYALMAVFCMAVFAVI 101
                 6***********9876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (216 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       725  (0.0404373); expected 358.6 (0.02)
Passed bias filter:                      446  (0.0248759); expected 358.6 (0.02)
Passed Vit filter:                        54  (0.00301188); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.41u 0.23s 00:00:00.64 Elapsed: 00:00:00.38
# Mc/sec: 1688.81
//
Query:       KOO24068.1  [L=378]
Description: mannose-1-phosphate guanylyltransferase, partial [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.6e-26   93.4   0.0    2.2e-26   92.9   0.0    1.1  1  NTP_transferase  Nucleotidyl transferase
    3.4e-10   39.2   0.5    3.1e-08   33.0   0.3    2.8  2  Hexapep          Bacterial transferase hexapeptide (six repea
      7e-05   23.2   0.0    0.00011   22.6   0.0    1.4  1  NTP_transf_3     MobA-like NTP transferase domain
    0.00042   19.4   0.0       0.35    9.7   0.0    3.0  2  Fucokinase       L-fucokinase
     0.0012   18.6   4.2     0.0082   15.9   0.7    3.2  3  Hexapep_2        Hexapeptide repeat of succinyl-transferase


Domain annotation for each model (and alignments):
>> NTP_transferase  Nucleotidyl transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   92.9   0.0   6.2e-30   2.2e-26      13     241 ..       4     226 ..       3     230 .. 0.88

  Alignments for each domain:
  == domain 1  score: 92.9 bits;  conditional E-value: 6.2e-30
                      GTTCCTTSSGGGSEETTETETTHHHHHHHHHTT-SEEEEEEETTT..HHHHHHHHTTSG.GGTSEEEEEEESS--BGGHHHHHTHHHHTTSSE. CS
  NTP_transferase  13 LwPLtrtlakklvpvlgkerliqatlsrlansgieeiivvltqeh..sflveeqlkegs.kfgvevlialepegkgtAdAvalaaelledeks. 102
                      ++P+t++l+ +l+ + +  +l++++l +l ++g+ e ++++ +e+   ++++e++k+ + ++g+++ +a e+   gtA++++ a+ ++  e++ 
       KOO24068.1   4 MRPITMSLPLPLIEFCNV-SLLEHQLRALKDAGVSE-VLICVHERvvPTTFDEYVKRCEvELGLKIGCAKEETALGTAGPLKAAEAMITSESDp 95 
                      58****************.*****************.666666652256788888876525669*************************99999 PP

                      ..EEEEETTEEEESTTHHHHHHHHHTHSSTT.SEEEEEEESS-CTTSEEEEEC.TTSBEEEEECS-SSHSHCSEECCSEEEEETTHHHHHHHCC CS
  NTP_transferase 103 delvlvLggDhlikdayeeavkkaiekaakg.tvtfgivpveeateyGviead.eegrverfvEKPkeakaselassGiYvfnsevllflakdl 194
                      d+ ++v+++D+l+++ +++++  ++++a++g  +t+   + +  ++yGv  +d  +grv++fv KP++   s+++++G+Yvf ++++  l    
       KOO24068.1  96 DTPFIVVNSDVLCTYPLRDLLHLHKKHAREGtVLTTRCADPSITSRYGVCVIDeRTGRVRHFVDKPQTYV-SDVINAGVYVFSPSIFRRL---- 184
                      9*****************************955566667777899********6667************9.*****************99.... PP

                      HHHTTSSCHHHHHHHHHHHTTEEEEEECSTTEE-EEEXSSHHHHHHH CS
  NTP_transferase 195 eelkrgedeitdilpkaleegkvalaflfkdaeyWsDvGtldsllea 241
                         + ++ ++ +ilp + ++++ + ++l  +  yW  + +  s+l+a
       KOO24068.1 185 --PAGRKISMNEILPVLANADQLH-SMLLHG--YWVKITDCTSFLDA 226
                      ..5678888999999998887777.779999..89988888888876 PP

>> Hexapep  Bacterial transferase hexapeptide (six repeats)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.0   0.3   8.6e-12   3.1e-08       1      33 [.     262     294 ..     256     297 .. 0.69
   2 ?    4.0   0.0     0.012        43       7      35 ..     297     324 ..     294     325 .. 0.85

  Alignments for each domain:
  == domain 1  score: 33.0 bits;  conditional E-value: 8.6e-12
                 TEEEETTEEE-TTEEEETTEEE-TTEEEETTEE CS
     Hexapep   1 stvIGsnvlIgpfaviggnVkIGdnvkIgagvv 33 
                 s++IG ++++gp +vig+++++G++v+++a + 
  KOO24068.1 262 SAKIGAGCVLGPRVVIGPDCVLGEGVRLEASAL 294
                 467777777777777777777777777777665 PP

  == domain 2  score: 4.0 bits;  conditional E-value: 0.012
                 TEEE-TTEEEETTEEE-TTEEEETTEEEE CS
     Hexapep   7 nvlIgpfaviggnVkIGdnvkIgagvvig 35 
                 +v+I++ a +  n  +G ++++g ++ + 
  KOO24068.1 297 GVQIRSHALV-KNSLLGWRCTVGQWSHVI 324
                 7899999999.8888********998875 PP

>> NTP_transf_3  MobA-like NTP transferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.6   0.0   3.1e-08   0.00011      17     123 ..      14     131 ..       9     202 .. 0.78

  Alignments for each domain:
  == domain 1  score: 22.6 bits;  conditional E-value: 3.1e-08
                   HHHCCCCCCHHHHHHHHHCTT.-CEEEEECSHCHHHHHHTTC..........TS-EEE-TTS..S-SHHHHHHHHHHH.H.SSSCEEEEETT-TT-- CS
  NTP_transf_3  17 allplggkpllervldalraagvdevvvvggdeevlaalarl..........gvrvvededp..gkgplaslaaalra.aadadavlvlacDmPllt 100
                   +l+++++ +lle++l+al++agv+ev++++ ++ v   ++++          ++ ++++e +   +gpl++  a + + +  +++++v+  D+ +  
    KOO24068.1  14 PLIEFCNVSLLEHQLRALKDAGVSEVLICVHERVVPTTFDEYvkrcevelglKIGCAKEETAlgTAGPLKAAEAMITSeSDPDTPFIVVNSDVLC-- 108
                   6999**************************99855554433333333333224445666655535899999998888744488999999999977.. PP

                   HHHHHHHHHCHHHHTSSEEEEES CS
  NTP_transf_3 101 pelverllaaaaasgadvvvpty 123
                   +  ++ ll+ ++++  + +v+t+
    KOO24068.1 109 TYPLRDLLHLHKKHAREGTVLTT 131
                   34477777777777666666554 PP

>> Fucokinase  L-fucokinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.7   0.0    0.0033        12      52     118 ..      99     162 ..      84     184 .. 0.80
   2 !    9.7   0.0   9.9e-05      0.35     284     325 ..     268     307 ..     190     365 .. 0.51

  Alignments for each domain:
  == domain 1  score: 4.7 bits;  conditional E-value: 0.0033
  Fucokinase  52 vlvtssDvlllf...dseeisfdka..gvtalavpstldigtnHGVfvlddqsseeeeleirsvkkflhKps 118
                 ++v++sDvl ++   d  ++  ++a  g +  +  ++ +i +  GV+v+d+          ++v++f+ Kp 
  KOO24068.1  99 FIVVNSDVLCTYplrDLLHLHKKHAreGTVLTTRCADPSITSRYGVCVIDER--------TGRVRHFVDKPQ 162
                 68999****988865444444433375777777789***************9........688999998886 PP

  == domain 2  score: 9.7 bits;  conditional E-value: 9.9e-05
  Fucokinase 284 svsvgegsvie.hsslkgnvsigsnsivsglelesseeslelp 325
                 ++ +g++ vi  ++ l+++v+ ++  ++ g++++s++    ++
  KOO24068.1 268 GCVLGPRVVIGpDCVLGEGVRLEASALLAGVQIRSHAL---VK 307
                 44444444443455555555555555555555554322...22 PP

>> Hexapep_2  Hexapeptide repeat of succinyl-transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.2      0.35   1.3e+03      25      32 ..     168     175 ..     168     177 .. 0.88
   2 !   15.9   0.7   2.3e-06    0.0082       3      28 ..     264     291 ..     262     293 .. 0.83
   3 ?    1.7   0.0     0.062   2.2e+02       6      17 ..     307     318 ..     307     324 .. 0.92

  Alignments for each domain:
  == domain 1  score: -0.7 bits;  conditional E-value: 0.35
                 EE-TT-EE CS
   Hexapep_2  25 vvgaGvvi 32 
                 v+ aGv++
  KOO24068.1 168 VINAGVYV 175
                 799****9 PP

  == domain 2  score: 15.9 bits;  conditional E-value: 2.3e-06
                 EE-TT-EE-TT-EES..EEE-TT-EE-T CS
   Hexapep_2   3 iIGdnCliGanagiG..vslGdncvvga 28 
                 +IG+ C++G++ +iG    lG+++ ++a
  KOO24068.1 264 KIGAGCVLGPRVVIGpdCVLGEGVRLEA 291
                 7999999999999966688999888887 PP

  == domain 3  score: 1.7 bits;  conditional E-value: 0.062
                 TT-EE-TT-EES CS
   Hexapep_2   6 dnCliGanagiG 17 
                 +n+l+G ++++G
  KOO24068.1 307 KNSLLGWRCTVG 318
                 79*******998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (378 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       296  (0.0165096); expected 358.6 (0.02)
Passed bias filter:                      286  (0.0159518); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.47u 0.26s 00:00:00.73 Elapsed: 00:00:00.43
# Mc/sec: 2643.39
//
Query:       KOO24069.1  [L=2614]
Description: voltage-gated ion channel superfamily [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
   2.9e-187  619.5  62.5    7.4e-53  179.3   6.9    4.1  4  Ion_trans    Ion transport protein
    9.6e-24   83.8   1.4    4.1e-07   30.5   0.1    4.0  3  Ank_2        Ankyrin repeats (3 copies)
    3.8e-15   55.8   6.7     0.0056   17.0   0.0    5.6  5  Ank_5        Ankyrin repeats (many copies)
    5.8e-15   55.4   1.0    6.4e-07   29.8   0.1    4.3  4  Ank_4        Ankyrin repeats (many copies)
    7.9e-15   54.6   8.0     0.0022   18.3   0.0    6.7  6  Ank          Ankyrin repeat
    6.6e-14   50.7   8.9       0.16   12.6   0.0    6.6  6  Ank_3        Ankyrin repeat
    6.8e-14   51.8   0.0    1.5e-13   50.7   0.0    1.6  1  U-box        U-box domain
    4.4e-09   36.0   0.0    1.1e-08   34.7   0.0    1.7  1  GPHH         Voltage-dependent L-type calcium channel, IQ-ass
    0.00021   20.5   0.0     0.0077   15.4   0.0    2.8  3  K_oxygenase  L-lysine 6-monooxygenase (NADPH-requiring)
     0.0045   17.5   0.0       0.01   16.4   0.0    1.6  1  Pyr_redox    Pyridine nucleotide-disulphide oxidoreductase
  ------ inclusion threshold ------
       0.16   11.8   0.0       0.36   10.7   0.0    1.5  1  zf-Nse       Zinc-finger of the MIZ type in Nse subunit
       0.16   12.1   0.0       0.36   11.0   0.0    1.5  1  zf-NOSIP     Zinc-finger of nitric oxide synthase-interacting
       0.24   10.6   0.0       0.41    9.9   0.0    1.2  1  Pyr_redox_3  Pyridine nucleotide-disulphide oxidoreductase


Domain annotation for each model (and alignments):
>> Ion_trans  Ion transport protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  179.3   6.9   5.4e-56   7.4e-53       2     237 ..    1170    1444 ..    1169    1449 .. 0.94
   2 !  131.8  11.9   1.7e-41   2.3e-38       2     238 ..    1516    1766 ..    1515    1771 .. 0.87
   3 !  174.1   3.3   2.1e-54   2.9e-51       1     244 [.    1837    2120 ..    1837    2121 .. 0.92
   4 !  153.1  16.6   5.5e-48   7.6e-45       2     241 ..    2167    2424 ..    2166    2427 .. 0.90

  Alignments for each domain:
  == domain 1  score: 179.3 bits;  conditional E-value: 5.4e-56
                  HHHHHHHHHHHHHHHHHHHCCCSSSSHHHHC.HHHHHHHHHHHHHHHHHHHHHHHHHTH.HHHHHHCHSHHHHHHHHHHHHHHHHH.HHHHHHHHHH CS
   Ion_trans    2 svfelfilllillncvflaletyfpedelek.tileilelvftaiftlemllkilalgl.likkrYlrdpwnilDflvvlpsllsl.vlseesllll 95  
                  ++f+ fill+il+nc ++ale++ +e  + k ++++ +e+vf+aift e+l k+la+gl  ++++Ylrdpw+ lDf vv++++l + ++   +l++ 
  KOO24069.1 1170 RYFDPFILLTILTNCGTMALESPLDEPGTWKsEAIDNFEWVFLAIFTSELLAKVLAYGLiTHSGSYLRDPWCQLDFAVVTLAWLPIlIP---TLGHY 1263
                  79***********************9777778****************************************************88444...59*** PP

                  HHHHHHGGGGGGHHHCHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCC................................. CS
   Ion_trans   96 svlrlfrvlrllklisrleglrtlvtalirsvkdllnvlllllvvlfifaligvqlfkgklrek................................. 159 
                  s lr++rvlr+l++++r++g+  lv+ l++++ ++ nv+l++++v++i +++g++lfkg+l+++                                 
  KOO24069.1 1264 STLRALRVLRPLRALKRVPGMPLLVQWLLDVMSKMANVVLIFVFVFLITGIVGMELFKGTLHYRcalpgfvegveasmqapfdtqiachqtddpctk 1360
                  *************************************************************************999999999999888888877776 PP

                  .CC.....SCCSTSSSTTTSSSSSSHHHHHHHHHHHHTTSSHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
   Ion_trans  160 .ne.....caktwenpnngntnFdnfftallwlfrlmttegwgdilyatldekskvaliyfvifiilgsflllNlliaviadnf 237 
                   n      c+   +npn+g t+Fd+++ a++ l +  t+++w + +y+ +  +s + +iyf++++++++f l Nl++avi   +
  KOO24069.1 1361 hNLaegstCKFFAANPNHGVTSFDSIGLAFIMLAQGTTFDDWAESMYQLMIVSSPFVWIYFALVVLICGFCLANLFLAVIFLEY 1444
                  6115567899**********************************************************************8666 PP

  == domain 2  score: 131.8 bits;  conditional E-value: 1.7e-41
                  HHHHHHHHHHHHHHHHHHHCCCSSSSHHHHC...HHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHCHSHHHH.....HHHHHHHHHHHHHHHHH. CS
   Ion_trans    2 svfelfilllillncvflaletyfpedelek...tileilelvftaiftlemllkilalgllikkrYlrdpwni.....lDflvvlpsllslvlse. 89  
                  s++++  ++l+ +n+v++++ +  +           le   +v+ ++f+ em +k+ +lg+     Y++d wn+     lD ++v+++ l++vls  
  KOO24069.1 1516 SWLSMSATILVAINVVLMCMPYEGMT----AtyaANLEQGSMVISCLFIAEMGIKVTGLGC---AGYWSDGWNVrkiqmLDGTIVSLTTLEMVLSAl 1605
                  688888899***********333333....334699*************************...*********644444777888888888866667 PP

                  .....HHHHHHHHHHHHGGGGGGHHHCHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCCCC..........SCCSTSSSTT CS
   Ion_trans   90 .....esllllsvlrlfrvlrllklisrleglrtlvtalirsvkdllnvlllllvvlfifaligvqlfkgklrekne..........caktwenpnn 171 
                       +s+  l++lr++rvlr+l+l+++++gl ++ ++++r+++++ n+++l+++++f+f+l+g+qlf+g +  ++           c   +  +++
  KOO24069.1 1606 laghaGSVTFLRMLRILRVLRILRLMKSWRGLYIICRTFLRALPQMANIMILIVLCMFVFSLLGMQLFGGIYTIESGyspehcpgevC--DEGLEEK 1700
                  8888899*************************************************************99999772255556666555..3444456 PP

                  TSSSSSSHHHHHHHHHHHHTTSSHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
   Ion_trans  172 gntnFdnfftallwlfrlmttegwgdilyatldekskvaliyfvifiilgsflllNlliaviadnfq 238 
                  + ++Fd  +  ++++f l+t+e w + + ++ + ++ +  ++f++++++g +ll+Nll+avi   f+
  KOO24069.1 1701 PPFHFDYSMPGMITIFILLTGE-WVQAMEPVVGLMGPWVAAFFILVVFIGKYLLINLLVAVILQEFS 1766
                  899*******************.****************************************9997 PP

  == domain 3  score: 174.1 bits;  conditional E-value: 2.1e-54
                  SHHHHHHHHHHHHHHHHHHHCCCSSSSHHHHC.HHHHHHHHHHHHHHHHHHHHHHHHHTH.HHHHHHCHSHHHHHHHHHHHHHHHHHHHHH.HHHHH CS
   Ion_trans    1 ssvfelfilllillncvflaletyfpedelek.tileilelvftaiftlemllkilalgl.likkrYlrdpwnilDflvvlpsllslvlse.eslll 94  
                  +++f+ +i+ +i+++++ lale++ +  ++ +   l +++++fta+f+lem++k++alg+ +++++Yl++ wn++Df ++++s+l+l  ++  +l +
  KOO24069.1 1837 NPWFDRLIIAVIICSSISLALESPRNDPNSLQaVCLGFADYIFTAVFFLEMCIKVVALGFaCGERTYLSSGWNRVDFAIIMVSILVLLVEKiPQLQG 1933
                  68*******************99988877777999**************************************************9944444689** PP

                  HHHHHHHGGGGGGHHHCHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCC......................CC.......S CS
   Ion_trans   95 lsvlrlfrvlrllklisrleglrtlvtalirsvkdllnvlllllvvlfifaligvqlfkgklrek......................ne.......c 162 
                  l+vlr++rvlr+l+l+ r eg+r ++t+l++++ +++nv+ ++l + ++f ++g++lf g + ++                      +e        
  KOO24069.1 1934 LKVLRTLRVLRPLRLVARNEGMRLIITSLFKCMGAVVNVFGVILTLQVVFTIVGIELFSGAMARCsdrtiltreecvagsarevgsaGElgpspafV 2030
                  *****************************************************************99999999888887777666551166677665 PP

                  CCSTSSSTTTSSSSSSHHHHHHHHHHHHTTSSHHHHHHHHHHHS..........HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
   Ion_trans  163 aktwenpnngntnFdnfftallwlfrlmttegwgdilyatldek..........skvaliyfvifiilgsflllNlliaviadnfqeltere 244 
                   ++w+n+  +  +Fd+f++a+  l ++ + + w+  +y+ ++++           +++ ++ +++++++  + +Nl+i+v++dnf++++++e
  KOO24069.1 2031 TTRWAND--PVGSFDDFGSAMRLLYVMSSADQWEAPMYVIMGARapgqapvrndFSLNALFPILWMLVSYEFAINLFIGVVVDNFSRIQQEE 2120
                  5677777..889*****************************************************************************986 PP

  == domain 4  score: 153.1 bits;  conditional E-value: 5.5e-48
                  HHHHHHHHHHHHHHHHHHHCCCSSSSHHHHC.HHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHCHSHHHHHHHHHHHHHHHHH..........HH CS
   Ion_trans    2 svfelfilllillncvflaletyfpedelek.tileilelvftaiftlemllkilalgllikkrYlrdpwnilDflvvlpsllsl..........vl 87  
                  s+f++fi+++i+ n+v++  ++y  e e++   + +i+  +f+ i+  e+llki +lg      Y++d w+++Df+ v++sll+             
  KOO24069.1 2167 SLFDSFIICVIIANTVVMSWDYYGIENETSVfLAYQIAMHTFNLIYYAECLLKIGGLGA---DGYFQDSWCRFDFFLVCTSLLDDfaasilarfiP- 2259
                  78******************999999777769999999*********************...*********************5434443444430. PP

                  HHHHHHHHHHHHHHGGGGGGHHHCHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCCCC.SCCSTSSSTTTSSSSSSHHHHH CS
   Ion_trans   88 seesllllsvlrlfrvlrllklisrleglrtlvtalirsvkdllnvlllllvvlfifaligvqlfkgklrekne.caktwenpnngntnFdnfftal 183 
                        ll++lr++r+lr+l+l+++ +glr l+ ++i s+++lln+  ll++++fi+a++g q+f    +++ + +  +  + +n+  nF++f++++
  KOO24069.1 2260 --VPPMLLRILRILRILRILRLLRHAKGLRDLIVTMILSFPSLLNIGSLLALIIFIYAVLGRQVFTFLAYRT-RaEGGAPLTGINNMRNFETFSSSY 2353
                  ..669************************************************************3333322.2344556666888999******** PP

                  HHHHHHHTTSSHHHHHHHHHHHS.............HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
   Ion_trans  184 lwlfrlmttegwgdilyatldek.............skvaliyfvifiilgsflllNlliaviadnfqelt 241 
                  l lf+++t++gw +++ + +  +             s+va+ yf++f ++g f++ Nl++avi +nf+ l+
  KOO24069.1 2354 LLLFQCLTGDGWSTMMTDSMIDEqtglcsneegncgSNVAIPYFISFQFVGCFVFANLIVAVILENFATLH 2424
                  ********************9999*******************************************9876 PP

>> Ank_2  Ankyrin repeats (3 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.0   0.0   8.6e-10   1.2e-06      14      83 .]      22     100 ..      10     100 .. 0.79
   2 !   30.5   0.1     3e-10   4.1e-07      25      80 ..     231     292 ..     217     295 .. 0.85
   3 !   23.1   0.0     6e-08   8.3e-05      16      73 ..     284     351 ..     282     361 .. 0.76

  Alignments for each domain:
  == domain 1  score: 29.0 bits;  conditional E-value: 8.6e-10
       Ank_2  14 klLlegadpn..k.ngktaLhyAakngnleivklLleh...ad...ndgrtpLhyAarsghleivklLlekgadinlkd 83 
                 ++L +g d++  + +g+t L++Aa +g   +++ ++++   +d   + g+t+L++A++ g  +iv  Ll  ga+++++d
  KOO24069.1  22 DWLRAGGDVDarDaKGRTLLMLAATQGRSAVLEVIIAAratVDaqqSLGMTALMFACFTGEARIVMQLLLAGANPKAQD 100
                 455578788865479************988899999966674454577*********999999998888689*999886 PP

  == domain 2  score: 30.5 bits;  conditional E-value: 3e-10
       Ank_2  25 ngktaLhyAakngnleivklLleh......adndgrtpLhyAarsghleivklLlekgadin 80 
                  g taL +Aa  g++++v++Ll+       +d+ g+tpL  A+  gh  ++++Ll  ga ++
  KOO24069.1 231 LGGTALLHAAAVGHTHMVEALLARgapidaVDKLGWTPLASACAAGHVVAAEMLLRAGALPD 292
                 5789******************966787778899*********9***********7788655 PP

  == domain 3  score: 23.1 bits;  conditional E-value: 6e-08
       Ank_2  16 Ll.egadpn..k.ngktaLhyAakngnleivklLleh.....ad.ndgrtpLhyAarsghleivklLl 73 
                 Ll +ga p+  +  g taL++Aa +g +e+v+lLl+      a+     tpL +A ++gh  ++ l+ 
  KOO24069.1 284 LLrAGALPDvpDqYGVTALMHAAVSGRNELVRLLLKTaasryARgPGRVTPLLLAEKQGHASTAALMR 351
                 66667666665359************99*******96655554445555********9*988877655 PP

>> Ank_5  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.5   0.0     5e-05     0.069       4      41 ..      26      62 ..      24      70 .. 0.83
   2 !    8.4   0.0     0.002       2.8      10      49 ..      64     103 ..      61     110 .. 0.76
   3 !   16.2   0.1   6.9e-06    0.0096      16      53 ..     233     269 ..     223     272 .. 0.93
   4 !   17.0   0.0   4.1e-06    0.0056       1      36 [.     284     318 ..     284     338 .. 0.90
   5 ?   -0.5   0.1       1.3   1.7e+03      15      36 ..     942     963 ..     941     971 .. 0.80

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 5e-05
       Ank_5  4 hgpadvnrldgggntpLhvAakygaadvvrlLlargad 41
                +g  dv+++d +g t L++Aa +g++ v+++++a +a 
  KOO24069.1 26 AG-GDVDARDAKGRTLLMLAATQGRSAVLEVIIAARAT 62
                56.79999*************************66664 PP

  == domain 2  score: 8.4 bits;  conditional E-value: 0.002
       Ank_5  10 nrldgggntpLhvAakygaadvvrlLlargadlnltdsrG 49 
                 ++++  g+t+L++A+  g a++v  Ll  ga+++++d r 
  KOO24069.1  64 DAQQSLGMTALMFACFTGEARIVMQLLLAGANPKAQDTRK 103
                 677888**********665555555555******999875 PP

  == domain 3  score: 16.2 bits;  conditional E-value: 6.9e-06
       Ank_5  16 gntpLhvAakygaadvvrlLlargadlnltdsrGltal 53 
                 g t+L +Aa  g+  +v+ Llarga +++ d+ G+t+l
  KOO24069.1 233 G-TALLHAAAVGHTHMVEALLARGAPIDAVDKLGWTPL 269
                 4.9999*******************************8 PP

  == domain 4  score: 17.0 bits;  conditional E-value: 4.1e-06
       Ank_5   1 LlehgpadvnrldgggntpLhvAakygaadvvrlLl 36 
                 Ll++g a ++ +d++g+t+L++Aa  g+ ++vrlLl
  KOO24069.1 284 LLRAG-ALPDVPDQYGVTALMHAAVSGRNELVRLLL 318
                 79999.****************************** PP

  == domain 5  score: -0.5 bits;  conditional E-value: 1.3
       Ank_5  15 ggntpLhvAakygaadvvrlLl 36 
                 gg ++ h+A++++++ +  + l
  KOO24069.1 942 GGLSAAHLACEAVRCGWTHVTL 963
                 78899*******9998876666 PP

>> Ank_4  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.5   0.0    0.0095        13      26      53 ..      29      55 ..      15      57 .. 0.89
   2 !   14.0   0.0   4.2e-05     0.058       2      46 ..      38      81 ..      37      91 .. 0.88
   3 !   29.8   0.1   4.7e-10   6.4e-07       3      55 .]     234     285 ..     232     285 .. 0.96
   4 !    7.2   0.0    0.0058         8       3      26 ..     300     323 ..     298     347 .. 0.80

  Alignments for each domain:
  == domain 1  score: 6.5 bits;  conditional E-value: 0.0095
       Ank_4 26 dinaqdnrsGetalhiAakrgnveilkl 53
                d++a+ ++ G+t+l  Aa  g+  +l+ 
  KOO24069.1 29 DVDAR-DAKGRTLLMLAATQGRSAVLEV 55
                89***.****************999986 PP

  == domain 2  score: 14.0 bits;  conditional E-value: 4.2e-05
       Ank_4  2 ltaLhyaaisgrlelvrlLlekgadinaqdnrsGetalhiAakrg 46
                +t+L  aa +gr  +++ +++ +a ++aq  + G+tal +A+ +g
  KOO24069.1 38 RTLLMLAATQGRSAVLEVIIAARATVDAQ-QSLGMTALMFACFTG 81
                788888888********************.999*********998 PP

  == domain 3  score: 29.8 bits;  conditional E-value: 4.7e-10
       Ank_4   3 taLhyaaisgrlelvrlLlekgadinaqdnrsGetalhiAakrgnveilklLl 55 
                 taL +aa+ g++ +v+ Ll++ga i+a+ ++ G+t+l  A+  g+v ++++Ll
  KOO24069.1 234 TALLHAAAVGHTHMVEALLARGAPIDAV-DKLGWTPLASACAAGHVVAAEMLL 285
                 89999999********************.*****************9999997 PP

  == domain 4  score: 7.2 bits;  conditional E-value: 0.0058
       Ank_4   3 taLhyaaisgrlelvrlLlekgad 26 
                 taL +aa sgr elvrlLl + a+
  KOO24069.1 300 TALMHAAVSGRNELVRLLLKTAAS 323
                 8999***************87665 PP

>> Ank  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.4   0.0    0.0023       3.2       2      30 ..      37      66 ..      36      67 .. 0.89
   2 !   18.3   0.0   1.6e-06    0.0022       2      31 ..      70     100 ..      69     101 .. 0.88
   3 !   12.0   0.3   0.00016      0.22       5      32 .]     236     263 ..     232     263 .. 0.87
   4 ?    5.1   0.1     0.024        34       2      29 ..     265     293 ..     264     296 .. 0.81
   5 !    9.1   0.0    0.0014       1.9       1      23 [.     297     320 ..     297     327 .. 0.77
   6 ?   -1.5   0.0         3   4.1e+03       1      21 [.    1117    1154 ..    1117    1159 .. 0.51

  Alignments for each domain:
  == domain 1  score: 8.4 bits;  conditional E-value: 0.0023
                SBBHHHHHHHHTTHHHHHHHH.TTTSTTCB CS
         Ank  2 GnTPLHlAatngkkriiklLL.hGAnlnal 30
                G+T L+lAat g   +++ ++  +A ++a+
  KOO24069.1 37 GRTLLMLAATQGRSAVLEVIIaARATVDAQ 66
                99*******999999999999778999886 PP

  == domain 2  score: 18.3 bits;  conditional E-value: 1.6e-06
                 SBBHHHHHHHHTTHHHH.HHHHTTTSTTCBT CS
         Ank   2 GnTPLHlAatngkkrii.klLLhGAnlnald 31 
                 G+T+L+ A+  g +ri+ +lLL GAn+ a+d
  KOO24069.1  70 GMTALMFACFTGEARIVmQLLLAGANPKAQD 100
                 9********8899999955777*****9998 PP

  == domain 3  score: 12.0 bits;  conditional E-value: 0.00016
                 HHHHHHHHTTHHHHHHHH.TTTSTTCBTT CS
         Ank   5 PLHlAatngkkriiklLL.hGAnlnaldn 32 
                  LH Aa  g+++++++LL +GA ++a+d+
  KOO24069.1 236 LLHAAA-VGHTHMVEALLaRGAPIDAVDK 263
                 488888.8**********99**99***95 PP

  == domain 4  score: 5.1 bits;  conditional E-value: 0.024
                 SBBHHHHHHHHTTHHHHHHHH.TTTSTTC CS
         Ank   2 GnTPLHlAatngkkriiklLL.hGAnlna 29 
                 G+TPL  A+  g++  +++LL  GA ++ 
  KOO24069.1 265 GWTPLASACAAGHVVAAEMLLrAGALPDV 293
                 9********99987777889977986565 PP

  == domain 5  score: 9.1 bits;  conditional E-value: 0.0014
                 TSBBHHHHHH...HHTTHHHHHHHH.T CS
         Ank   1 dGnTPLHlAa...tngkkriiklLL.h 23 
                 +G T+L+ Aa   +n   + ++lLL  
  KOO24069.1 297 YGVTALMHAAvsgRN---ELVRLLLkT 320
                 69******9966555...5*****944 PP

  == domain 6  score: -1.5 bits;  conditional E-value: 3
                  TSBBHHHH....HH........HHTT.......HHHHHHH CS
         Ank    1 dGnTPLHl....Aa........tngk.......kriiklL 21  
                  + +TPL +    Aa        +           rii++L
  KOO24069.1 1117 NEMTPLYIsgalAAlqlgpdafN--LagagqgaSRIISDL 1154
                  57999998444433433333230..122333446688877 PP

>> Ank_3  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.7   0.0   0.00051       0.7       2      29 ..      37      63 ..      36      65 .. 0.87
   2 ?    5.3   0.0     0.028        38       2      29 ..      70      96 ..      69      98 .. 0.84
   3 !   12.5   0.1   0.00012      0.17       2      31 .]     232     260 ..     231     260 .. 0.93
   4 !    9.4   0.0    0.0013       1.7       2      28 ..     265     290 ..     264     293 .. 0.89
   5 !   12.6   0.0   0.00012      0.16       1      23 [.     297     319 ..     297     325 .. 0.92
   6 ?   -2.1   0.1       7.2   9.9e+03       2      12 ..     943     953 ..     942     957 .. 0.85

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00051
       Ank_3  2 GetpLhlAarsgnleivkfLlenkgadv 29
                G+t+L+lAa +g+ ++++ ++    a v
  KOO24069.1 37 GRTLLMLAATQGRSAVLEVIIA-ARATV 63
                9*******************99.56655 PP

  == domain 2  score: 5.3 bits;  conditional E-value: 0.028
       Ank_3  2 GetpLhlAarsgnle.ivkfLlenkgadv 29
                G+t+L++A+  g    ++++Ll   ga++
  KOO24069.1 70 GMTALMFACFTGEARiVMQLLLA--GANP 96
                89************757999998..7776 PP

  == domain 3  score: 12.5 bits;  conditional E-value: 0.00012
       Ank_3   2 GetpLhlAarsgnleivkfLlenkgadvna 31 
                 G t+L +Aa  g++ +v++Ll  +ga+++a
  KOO24069.1 232 GGTALLHAAAVGHTHMVEALLA-RGAPIDA 260
                 679*******************.9**9985 PP

  == domain 4  score: 9.4 bits;  conditional E-value: 0.0013
       Ank_3   2 GetpLhlAarsgnleivkfLlenkgad 28 
                 G+tpL  A+ +g++  +++Ll+  ga 
  KOO24069.1 265 GWTPLASACAAGHVVAAEMLLR-AGAL 290
                 9*************99******.7875 PP

  == domain 5  score: 12.6 bits;  conditional E-value: 0.00012
       Ank_3   1 nGetpLhlAarsgnleivkfLle 23 
                 +G t+L++Aa sg+ e+v++Ll+
  KOO24069.1 297 YGVTALMHAAVSGRNELVRLLLK 319
                 689*******************8 PP

  == domain 6  score: -2.1 bits;  conditional E-value: 7.2
       Ank_3   2 GetpLhlAars 12 
                 G ++ hlA+++
  KOO24069.1 943 GLSAAHLACEA 953
                 8899*****86 PP

>> U-box  U-box domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.7   0.0   1.1e-16   1.5e-13       1      69 [.     618     691 ..     618     695 .. 0.94

  Alignments for each domain:
  == domain 1  score: 50.7 bits;  conditional E-value: 1.1e-16
                 SSGGGB-TTT-SB-SSEEEETTTEEEEHHHHHHHHTT......SSB-TTT-SB--GGGSEE-HHHHHHHHHHHH CS
       U-box   1 iPdefldpitlelmkdPvilpsgvvvdrstiekhlls.....rdktdPftrepltqdqlipnlelKekIdefle 69 
                 +P   l+pit ++m dPvi+++g+++drs+ie++        + +t+P+t epl++++l+pnl ++  + ef e
  KOO24069.1 618 VPTNHLCPITHQMMVDPVITADGTTYDRSAIEAWFAMqtrrgEAATSPLTGEPLANNHLLPNLIVRSLVREFAE 691
                 79999*****************************99888888899************************99987 PP

>> GPHH  Voltage-dependent L-type calcium channel, IQ-associated
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.7   0.0   7.9e-12   1.1e-08       2      52 ..    2439    2488 ..    2438    2490 .. 0.85

  Alignments for each domain:
  == domain 1  score: 34.7 bits;  conditional E-value: 7.9e-12
        GPHH    2 FvrvWaeyDPeAtgrikvqdmyellrrlspPLGfGkkcPsrvaykrlvrmn 52  
                  F+++Wae DPeAt +i  +++  ll +l+pPLG++ + +  +a +  +r++
  KOO24069.1 2439 FQEAWAELDPEATNFIPLESLPALLLKLPPPLGLK-GKSELRAKQMCMRLH 2488
                  9*********************************6.666666666555665 PP

>> K_oxygenase  L-lysine 6-monooxygenase (NADPH-requiring)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.1   0.0      0.13   1.7e+02     147     186 ..     809     853 ..     793     858 .. 0.84
   2 !   15.4   0.0   5.6e-06    0.0077     189     340 ..     932    1082 ..     924    1084 .. 0.78
   3 ?   -1.4   0.0      0.72   9.9e+02     196     230 ..    1140    1174 ..    1130    1175 .. 0.82

  Alignments for each domain:
  == domain 1  score: 1.1 bits;  conditional E-value: 0.13
  K_oxygenase 147 learnlvlgvG..tepkiPevlekle...gkervvHsseylerke 186
                  ++a ++vl+vG   +++ P+++ + +   +  r++Hss+++++++
   KOO24069.1 809 IRASHVVLAVGdgDTAAWPDWAVQGKgsaPPGRLLHSSQLATSHS 853
                  67999999998667999****988775555689******998774 PP

  == domain 2  score: 15.4 bits;  conditional E-value: 5.6e-06
  K_oxygenase  189 lakkriaVvGsGqSaaeifedllrrqkkvelklvtrse.alepld.dspfvneifsPey...vdyfyslpeekreallkeqkatnykgvdaeliee 279 
                   l k +++V+G+G Saa+++ +++r    ++++lv+r + a++p d d   +  ++s+e      +f++    +r+all++ +    ++++++ +++
   KOO24069.1  932 LGKGQLLVIGGGLSAAHLACEAVRCGW-THVTLVARHRmAVRPFDiDVAWMRRHLSAELeacEAEFFAACPAERRALLRKAR--PGGSLTRASLAD 1024
                   567889*****************9976.789999996526677775556678888887522245788888899999999976..699999999999 PP

  K_oxygenase  280 lyeelyeqkvkgeerlrllpnrevesaeaegkg...eveltlrneesgeeetlevdavvlATGY 340 
                   l e  ++ ++      +ll++  v +a +++k+   ++ ++l     g +++l vda++lATG 
   KOO24069.1 1025 LDELRRRGQL------ELLEEAYVLEACWSAKHmegAWIVSLIRGGVGGTTSLVVDAIWLATGA 1082
                   9665555555......788888888887776433449999***********************6 PP

  == domain 3  score: -1.4 bits;  conditional E-value: 0.72
  K_oxygenase  196 VvGsGqSaaeifedllrrqkkvelklvtrsealep 230 
                     G+Gq a+ i+ dl   +++ +  +++ s+ + p
   KOO24069.1 1140 LAGAGQGASRIISDLCGYEPRRSAIMFVESRYFDP 1174
                   67**************9999888888777776665 PP

>> Pyr_redox  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   0.0   7.4e-06      0.01       2      50 ..     937     985 ..     936     989 .. 0.88

  Alignments for each domain:
  == domain 1  score: 16.4 bits;  conditional E-value: 7.4e-06
                 EEEECSSHHHHHHHHHHHHTT.SEEEEEESSSSSSTTSSHHHHHHHHHHH CS
   Pyr_redox   2 vvvvGgGyiglElAgalaelg.kkVtvversdkllrllDeeaskilqekl 50 
                 ++v+GgG+++  lA+++ + g  +Vt+v r+ +  r +D ++ ++++++l
  KOO24069.1 937 LLVIGGGLSAAHLACEAVRCGwTHVTLVARHRMAVRPFDIDV-AWMRRHL 985
                 79*******************99********9999****995.4666665 PP

>> zf-Nse  Zinc-finger of the MIZ type in Nse subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   0.00026      0.36      12      44 ..     622     657 ..     616     668 .. 0.77

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00026
                 SB-TTTSSB-SSEEEESSS--EEEHHHHHHHC....T CS
      zf-Nse  12 lkCPltlqpfeePvtskkCpHvFEreaIleli....k 44 
                   CP+t q +++Pv+      +++r+aI++ +    +
  KOO24069.1 622 HLCPITHQMMVDPVITAD-GTTYDRSAIEAWFamqtR 657
                 56************9766.669******998855544 PP

>> zf-NOSIP  Zinc-finger of nitric oxide synthase-interacting protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   0.00026      0.36      41      70 ..     622     651 ..     599     656 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00026
    zf-NOSIP  41 dccslslqacrdpvltedgylyekeailey 70 
                 + c ++ q   dpv+t dg  y++ ai  +
  KOO24069.1 622 HLCPITHQMMVDPVITADGTTYDRSAIEAW 651
                 5699999*******************9765 PP

>> Pyr_redox_3  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   0.0    0.0003      0.41     162     200 ..     932     971 ..     923    1003 .. 0.74

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.0003
  Pyr_redox_3 162 yagqkvvViGgknSavDaAlelvrkg.aeVtvvtrgseie 200
                  + + +++ViGg+ Sa+  A+e vr g  +Vt+v r+    
   KOO24069.1 932 LGKGQLLVIGGGLSAAHLACEAVRCGwTHVTLVARHRMAV 971
                  567789*******************9568****9997433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (2614 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1068  (0.0595683); expected 358.6 (0.02)
Passed bias filter:                      539  (0.030063); expected 358.6 (0.02)
Passed Vit filter:                        59  (0.00329076); expected 17.9 (0.001)
Passed Fwd filter:                        16  (0.000892409); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 1.35u 0.34s 00:00:01.69 Elapsed: 00:00:00.53
# Mc/sec: 14912.51
//
Query:       KOO24070.1  [L=805]
Description: hypothetical protein Ctob_010781 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
      5e-39  132.3   0.0    4.6e-05   23.5   0.0   10.9 13  Pentapeptide_4  Pentapeptide repeats (9 copies)
    5.5e-10   39.4  55.9      0.084   12.7   0.0   18.6 25  Ribosomal_L13e  Ribosomal protein L13e
    1.8e-06   28.3  18.4        9.2    6.8   0.0   14.2 18  Ntox33          Bacterial toxin 33
     0.0023   17.8   1.2         15    5.4   0.0    6.2  8  Sigma54_CBD     Sigma-54 factor, core binding domain
  ------ inclusion threshold ------
      0.036   14.1   7.3         38    4.4   0.0    8.8  9  DUF2639         Protein of unknown function (DUF2639)
      0.044   13.5   0.6         26    4.7   0.0    6.6  6  SAP             SAP domain
      0.085   13.0   0.1    1.6e+02    2.4   0.0    6.0  5  MerR_1          MerR HTH family regulatory protein
        1.6    8.5   5.3         13    5.6   0.2    4.4  3  Bradykinin      Bradykinin
        2.4    7.9   9.9       0.47   10.3   0.7    3.8  5  DUF5568         Family of unknown function (DUF5568)


Domain annotation for each model (and alignments):
>> Pentapeptide_4  Pentapeptide repeats (9 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.9   0.0    0.0035       6.9       6      74 ..       4      73 ..       1      82 [. 0.78
   2 !    8.2   0.0    0.0014       2.7      18      55 ..     126     163 ..      89     175 .. 0.56
   3 !    8.2   0.0    0.0013       2.7      22      59 ..     130     167 ..     115     236 .. 0.70
   4 !    8.2   0.0    0.0014       2.7      14      68 ..     213     279 ..     201     299 .. 0.53
   5 !   10.0   0.0   0.00037      0.73       5      77 .]     244     319 ..     241     319 .. 0.88
   6 !   13.4   0.0   3.2e-05     0.063       8      64 ..     309     374 ..     302     386 .. 0.48
   7 !   14.3   0.0   1.7e-05     0.033      13      74 ..     353     415 ..     347     418 .. 0.81
   8 !   17.8   0.0   1.4e-06    0.0027       3      70 ..     383     450 ..     381     459 .. 0.91
   9 !   11.7   0.0   0.00011      0.22       7      70 ..     427     496 ..     422     497 .. 0.91
  10 !   18.1   0.0   1.1e-06    0.0022      13      65 ..     479     531 ..     468     544 .. 0.87
  11 !   15.8   0.0   5.8e-06     0.012      12      74 ..     559     622 ..     551     635 .. 0.88
  12 !   23.5   0.0   2.3e-08   4.6e-05       1      77 []     668     755 ..     668     755 .. 0.82
  13 ?    3.3   0.0     0.045        90      27      65 ..     764     802 ..     752     805 .] 0.50

  Alignments for each domain:
  == domain 1  score: 6.9 bits;  conditional E-value: 0.0035
  Pentapeptide_4  6 csfnncklsnvnFsearlrdcnFtecrlsnvnFdecnlsdvdfaevdlkrasFsgcnlknvnfsd.klkd 74
                    ++fn+ k  ++ +s+ +l d+  t   ++n+  +  +l++++ +  +lk++ F  ++l+ + fs+ +l d
      KOO24070.1  4 AGFNAKKVRGAGYSALELLDAGWTVEICKNAGCSARDLREANCTIRELKEVGFVLSDLRYAGFSAqELQD 73
                    5666667777777777888888777778899999999999999999999999999999999998756776 PP

  == domain 2  score: 8.2 bits;  conditional E-value: 0.0014
  Pentapeptide_4  18 FsearlrdcnFtecrlsnvnFdecnlsdvdfaevdlkr 55 
                     +s  +l+++ Ft   l++v F+   l +v f+  +lk+
      KOO24070.1 126 YSVKELKGAGFTPLELHEVGFAAHELTSVGFTAKELKE 163
                     33334444445555555555555555555544444444 PP

  == domain 3  score: 8.2 bits;  conditional E-value: 0.0013
  Pentapeptide_4  22 rlrdcnFtecrlsnvnFdecnlsdvdfaevdlkrasFs 59 
                     +l+++ Ft   l++v F+   l +v f+  +lk+  +s
      KOO24070.1 130 ELKGAGFTPLELHEVGFAAHELTSVGFTAKELKEGGYS 167
                     55555666666666666666666666655555555444 PP

  == domain 4  score: 8.2 bits;  conditional E-value: 0.0014
  Pentapeptide_4  14 snvnFsearlrdcnFtecrlsnvnFdecnlsdvdfaevdlkra............sFsgcnlknvnf 68 
                      +  Fs+++l+++ ++   l+++  +    +d+ f+  +lk++             F + +lk+v f
      KOO24070.1 213 MEGGFSAIELKGAGLSVGELKAAGYAARATRDAGFNAQQLKDVgfaakdlyaegqGFAAIELKGVGF 279
                     5666777777777777666655554444444444444444444111111111144455555555555 PP

  == domain 5  score: 10.0 bits;  conditional E-value: 0.00037
  Pentapeptide_4   5 rcsfnncklsnvnFsearlrd..cnFtecrlsnvnFdecnlsdvdfaevdlkrasFsgcnlknvnfsd.klkdidF 77 
                     +++fn+ +l++v F++ +l +    F ++ l+ v F+  + +++ ++  +l +a++   +l  + f++ +l+ + F
      KOO24070.1 244 DAGFNAQQLKDVGFAAKDLYAegQGFAAIELKGVGFTAKQMRTAGLNVDQLVKAQYPLDELIAAGFKAnQLRPAGF 319
                     6789999999999999988665589999999*************************99999999998768988765 PP

  == domain 6  score: 13.4 bits;  conditional E-value: 3.2e-05
  Pentapeptide_4   8 fnncklsnvnFsearlrdcnFtecrl.......snvn..FdecnlsdvdfaevdlkrasFsgcnlk 64 
                     f++ +l  + F++++l++  Ft++ l       ++ +  F++  l ++ f++ ++++  +++ +lk
      KOO24070.1 309 FKANQLRPAGFTASELEEYGFTAAELkaggflpTELKeiFQSQELVQAGFTPSEMRDGGYTATDLK 374
                     334444444444444444444444443333333222233555555555555555555555555555 PP

  == domain 7  score: 14.3 bits;  conditional E-value: 1.7e-05
  Pentapeptide_4  13 lsnvnFsearlrdcnFtecrlsnvnFdecnlsdvdfaevdlkrasFsgcnlknvnfsd.klkd 74 
                     l ++ F+ +++rd   t+++l++v  +  +l++   ++++l  a Fs+ +lk + f++ +lk+
      KOO24070.1 353 LVQAGFTPSEMRDGGYTATDLKAVGCTAKDLKNGGYTGTELQAAGFSADELKAAGFKGkELKK 415
                     556788888899999999999999999999999999999999999999999999998856876 PP

  == domain 8  score: 17.8 bits;  conditional E-value: 1.4e-06
  Pentapeptide_4   3 ftrcsfnncklsnvnFsearlrdcnFtecrlsnvnFdecnlsdvdfaevdlkrasFsgcnlknvnfsd 70 
                     +++ ++ ++ l  + Fs+ +l+++ F++  l+ +  ++ +l  + f+  +lk+a +s+ + k++ f++
      KOO24070.1 383 LKNGGYTGTELQAAGFSADELKAAGFKGKELKKAGYNSRQLGIAGFSASQLKEAGYSAKDVKDAGFRA 450
                     677788999*******************************************************9975 PP

  == domain 9  score: 11.7 bits;  conditional E-value: 0.00011
  Pentapeptide_4   7 sfnncklsnvnFsearlrdcnFtecrl...snvn...FdecnlsdvdfaevdlkrasFsgcnlknvnfsd 70 
                     +f +++l+++ +s+ + +d+ F+++ +   s+ +   F+  +l+d  f+  +lk+   s+++l+++ fs+
      KOO24070.1 427 GFSASQLKEAGYSAKDVKDAGFRAASAftlSELRaggFTIKDLKDDGFSLKELKEGGCSASELRGSGFSA 496
                     799************************9995544556******************************986 PP

  == domain 10  score: 18.1 bits;  conditional E-value: 1.1e-06
  Pentapeptide_4  13 lsnvnFsearlrdcnFtecrlsnvnFdecnlsdvdfaevdlkrasFsgcnlkn 65 
                     l++   s+++lr++ F++  l++v F  ++l+d  f+ ++l+++ F+  +l++
      KOO24070.1 479 LKEGGCSASELRGSGFSAKELQSVGFGISHLRDGGFSAAELRKIGFQVLDLRQ 531
                     566666899**************************************999987 PP

  == domain 11  score: 15.8 bits;  conditional E-value: 5.8e-06
  Pentapeptide_4  12 klsnvnFsearlrdcnFtecrlsnvnFdecnlsdvdfaevdlkrasFsgcnlknvnfsd.klkd 74 
                     +l+   F++  lr++ + ++ l+++ F+ ++l+ v  + ++l++a + + +lk + f + +lk 
      KOO24070.1 559 DLKAGGFTALGLRAAGLPASELKAADFTATDLRAVGYSLAELRSAGYMAKELKAAQFTAgELKA 622
                     7888999999999999999999999999999999999999999999999999999996558886 PP

  == domain 12  score: 23.5 bits;  conditional E-value: 2.3e-08
  Pentapeptide_4   1 aeftrcsfnncklsnvnFsearlrdcnFtecrl..........snvnFdecnlsdvdfaevdlkrasFsgcnlknvnf.sdklkdidF 77 
                     a+f+ c+ ++ +l ++ +s+a+l++    ++ l          ++v F+  +l+ + f+  dl ++ Fs+ +lk+  f  + ++ + F
      KOO24070.1 668 ADFRGCGVLAIDLRECGYSAAELKAVGYDASELkaggyparhlKEVGFTAEVLKLAGFSALDLEDVGFSAKELKEGGFgTHDMMAAAF 755
                     6888888888888888888888888877777776688888888999999999999999999999999999999999995557877765 PP

  == domain 13  score: 3.3 bits;  conditional E-value: 0.045
  Pentapeptide_4  27 nFtecrlsnvnFdecnlsdvdfaevdlkrasFsgcnlkn 65 
                       t   l++v ++   l++  f+ ++lk+a+F    lk+
      KOO24070.1 764 GCTVDELKAVGMTLKELKEGGFSIAELKSANFPLWKLKE 802
                     333334455555555555555555555555555555554 PP

>> Ribosomal_L13e  Ribosomal protein L13e
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.1   0.0     0.037        74      58      97 ..       6      46 ..       2      53 .. 0.82
   2 ?   -1.1   0.0      0.72   1.4e+03      67      87 ..      55      75 ..      52      82 .. 0.65
   3 ?   -1.2   0.0      0.79   1.6e+03      67      84 ..      65      82 ..      61      90 .. 0.69
   4 !    6.5   0.3    0.0034       6.7      64      90 ..      92     118 ..      87     123 .. 0.90
   5 !    7.9   0.0    0.0012       2.5      54      87 ..     122     155 ..     117     160 .. 0.87
   6 ?    0.7   0.0      0.21   4.2e+02      67      80 ..     155     168 ..     152     180 .. 0.83
   7 ?   -3.3   0.1       3.5   7.1e+03      67      79 ..     186     198 ..     183     200 .. 0.87
   8 ?    2.7   0.2      0.05        99      64      87 ..     223     246 ..     215     251 .. 0.74
   9 !   12.5   0.1     5e-05       0.1      64      92 ..     265     293 ..     257     298 .. 0.94
  10 ?    1.0   0.1      0.17   3.3e+02      67      78 ..     328     339 ..     314     347 .. 0.80
  11 ?   -2.6   0.0       2.1   4.2e+03      65      78 ..     366     378 ..     355     382 .. 0.53
  12 ?    4.7   0.1     0.013        25      66      82 ..     396     412 ..     388     417 .. 0.84
  13 ?    1.6   0.1      0.11   2.2e+02      58      82 ..     418     442 ..     412     450 .. 0.79
  14 ?   -0.3   0.0      0.43   8.6e+02      63      80 ..     449     466 ..     445     471 .. 0.80
  15 ?    1.9   0.1     0.087   1.7e+02      66      80 ..     472     486 ..     463     491 .. 0.83
  16 ?    2.0   0.3     0.085   1.7e+02      65      79 ..     491     505 ..     485     551 .. 0.68
  17 ?    0.4   0.1      0.25   5.1e+02      65      80 ..     552     567 ..     537     577 .. 0.73
  18 ?   -1.2   0.0       0.8   1.6e+03      67      81 ..     564     578 ..     557     597 .. 0.79
  19 ?   -1.0   0.0      0.68   1.4e+03      67      81 ..     594     608 ..     587     613 .. 0.84
  20 !   12.7   0.0   4.2e-05     0.084      68     102 ..     615     650 ..     605     663 .. 0.85
  21 ?   -2.5   0.0         2   4.1e+03      67      80 ..     684     697 ..     681     704 .. 0.84
  22 ?   -1.4   0.0      0.88   1.8e+03      66      80 ..     713     727 ..     702     739 .. 0.78
  23 ?    0.4   0.1      0.26   5.2e+02      67      80 ..     734     747 ..     731     769 .. 0.59
  24 ?    1.0   0.0      0.17   3.3e+02      68      88 ..     755     775 ..     751     779 .. 0.71
  25 ?    1.3   0.0      0.14   2.8e+02      67      81 ..     784     798 ..     775     805 .] 0.77

  Alignments for each domain:
  == domain 1  score: 3.1 bits;  conditional E-value: 0.037
  Ribosomal_L13e 58 YntkvraGrGFtleElkaagiskklArtiGIav.DhRrknk 97
                    +n k   G G++  El  ag + ++ ++ G +  D R  n 
      KOO24070.1  6 FNAKKVRGAGYSALELLDAGWTVEICKNAGCSArDLREANC 46
                    7889999******************9999986437777665 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 0.72
  Ribosomal_L13e 67 GFtleElkaagiskklArtiG 87
                    GF l++l+ ag+s++  + +G
      KOO24070.1 55 GFVLSDLRYAGFSAQELQDVG 75
                    666666666666666555544 PP

  == domain 3  score: -1.2 bits;  conditional E-value: 0.79
  Ribosomal_L13e 67 GFtleElkaagiskklAr 84
                    GF+ +El+ +g  ++  r
      KOO24070.1 65 GFSAQELQDVGYGAEELR 82
                    788888888876655544 PP

  == domain 4  score: 6.5 bits;  conditional E-value: 0.0034
  Ribosomal_L13e  64 aGrGFtleElkaagiskklArtiGIav 90 
                     +G G +++Elkaagis+   ++ GIa+
      KOO24070.1  92 TGAGASVAELKAAGISATGLKSEGIAL 118
                     599**************9999999986 PP

  == domain 5  score: 7.9 bits;  conditional E-value: 0.0012
  Ribosomal_L13e  54 ptvrYntkvraGrGFtleElkaagiskklArtiG 87 
                     ++v Y +k   G GFt  El+++g+ ++   ++G
      KOO24070.1 122 KAVGYSVKELKGAGFTPLELHEVGFAAHELTSVG 155
                     5677999999***************999888887 PP

  == domain 6  score: 0.7 bits;  conditional E-value: 0.21
  Ribosomal_L13e  67 GFtleElkaagisk 80 
                     GFt +Elk+ g s 
      KOO24070.1 155 GFTAKELKEGGYSS 168
                     9********99765 PP

  == domain 7  score: -3.3 bits;  conditional E-value: 3.5
  Ribosomal_L13e  67 GFtleElkaagis 79 
                     GF+ +Elk  g++
      KOO24070.1 186 GFAARELKRGGFT 198
                     9*******99987 PP

  == domain 8  score: 2.7 bits;  conditional E-value: 0.05
  Ribosomal_L13e  64 aGrGFtleElkaagiskklArtiG 87 
                      G G ++ Elkaag  +++ r  G
      KOO24070.1 223 KGAGLSVGELKAAGYAARATRDAG 246
                     477888888888888777766655 PP

  == domain 9  score: 12.5 bits;  conditional E-value: 5e-05
  Ribosomal_L13e  64 aGrGFtleElkaagiskklArtiGIavDh 92 
                     +G+GF+  Elk +g+++k  rt G+ vD+
      KOO24070.1 265 EGQGFAAIELKGVGFTAKQMRTAGLNVDQ 293
                     7***************************7 PP

  == domain 10  score: 1.0 bits;  conditional E-value: 0.17
  Ribosomal_L13e  67 GFtleElkaagi 78 
                     GFt +Elka g+
      KOO24070.1 328 GFTAAELKAGGF 339
                     899999998886 PP

  == domain 11  score: -2.6 bits;  conditional E-value: 2.1
  Ribosomal_L13e  65 GrGFtleElkaagi 78 
                     G G+t ++lka+g 
      KOO24070.1 366 G-GYTATDLKAVGC 378
                     2.555555555554 PP

  == domain 12  score: 4.7 bits;  conditional E-value: 0.013
  Ribosomal_L13e  66 rGFtleElkaagiskkl 82 
                      GF+ +Elkaag++ k 
      KOO24070.1 396 AGFSADELKAAGFKGKE 412
                     5***********98775 PP

  == domain 13  score: 1.6 bits;  conditional E-value: 0.11
  Ribosomal_L13e  58 YntkvraGrGFtleElkaagiskkl 82 
                     Yn++     GF+ + lk+ag s+k 
      KOO24070.1 418 YNSRQLGIAGFSASQLKEAGYSAKD 442
                     777776668***********99875 PP

  == domain 14  score: -0.3 bits;  conditional E-value: 0.43
  Ribosomal_L13e  63 raGrGFtleElkaagisk 80 
                     ra   Ftl+El+a g++ 
      KOO24070.1 449 RAASAFTLSELRAGGFTI 466
                     667789999999999865 PP

  == domain 15  score: 1.9 bits;  conditional E-value: 0.087
  Ribosomal_L13e  66 rGFtleElkaagisk 80 
                      GF+l+Elk+ g s+
      KOO24070.1 472 DGFSLKELKEGGCSA 486
                     59*******999876 PP

  == domain 16  score: 2.0 bits;  conditional E-value: 0.085
  Ribosomal_L13e  65 GrGFtleElkaagis 79 
                     G GF+ +El+ +g+ 
      KOO24070.1 491 GSGFSAKELQSVGFG 505
                     556666666655543 PP

  == domain 17  score: 0.4 bits;  conditional E-value: 0.25
  Ribosomal_L13e  65 GrGFtleElkaagisk 80 
                       GFt+++lka g+++
      KOO24070.1 552 SAGFTVRDLKAGGFTA 567
                     5678888888777764 PP

  == domain 18  score: -1.2 bits;  conditional E-value: 0.8
  Ribosomal_L13e  67 GFtleElkaagiskk 81 
                     GFt   l+aag++++
      KOO24070.1 564 GFTALGLRAAGLPAS 578
                     899999999998764 PP

  == domain 19  score: -1.0 bits;  conditional E-value: 0.68
  Ribosomal_L13e  67 GFtleElkaagiskk 81 
                     G++l+El+ ag  +k
      KOO24070.1 594 GYSLAELRSAGYMAK 608
                     99********97655 PP

  == domain 20  score: 12.7 bits;  conditional E-value: 4.2e-05
  Ribosomal_L13e  68 FtleElkaagiskklArtiGI.avDhRrknkseesl 102
                     Ft  Elkaag+s k  rtiG  a+D R+   s e+l
      KOO24070.1 615 FTAGELKAAGVSVKELRTIGFsALDLRQAGCSVEAL 650
                     9*******************8458***999999987 PP

  == domain 21  score: -2.5 bits;  conditional E-value: 2
  Ribosomal_L13e  67 GFtleElkaagisk 80 
                     G++ +Elka+g ++
      KOO24070.1 684 GYSAAELKAVGYDA 697
                     9999*****99765 PP

  == domain 22  score: -1.4 bits;  conditional E-value: 0.88
  Ribosomal_L13e  66 rGFtleElkaagisk 80 
                      GFt e lk ag+s+
      KOO24070.1 713 VGFTAEVLKLAGFSA 727
                     599999999999986 PP

  == domain 23  score: 0.4 bits;  conditional E-value: 0.26
  Ribosomal_L13e  67 GFtleElkaagisk 80 
                     GF+ +Elk+ g+ +
      KOO24070.1 734 GFSAKELKEGGFGT 747
                     66666666665533 PP

  == domain 24  score: 1.0 bits;  conditional E-value: 0.17
  Ribosomal_L13e  68 FtleElkaagiskklArtiGI 88 
                     Ft eEl+ ag +    + +G+
      KOO24070.1 755 FTAEELRSAGCTVDELKAVGM 775
                     778888888877766666665 PP

  == domain 25  score: 1.3 bits;  conditional E-value: 0.14
  Ribosomal_L13e  67 GFtleElkaagiskk 81 
                     GF+++Elk a+++  
      KOO24070.1 784 GFSIAELKSANFPLW 798
                     9********998755 PP

>> Ntox33  Bacterial toxin 33
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.0       1.2   2.3e+03      17      33 ..       2      18 ..       1      21 [. 0.83
   2 ?   -0.6   0.0      0.97   1.9e+03      14      19 ..      69      74 ..      29      91 .. 0.64
   3 ?   -0.4   0.0      0.82   1.6e+03      16      24 ..     121     129 ..      96     137 .. 0.56
   4 ?   -1.0   0.0       1.3   2.6e+03      16      29 ..     151     166 ..     140     172 .. 0.60
   5 ?    2.1   0.0      0.14   2.8e+02      16      29 ..     182     195 ..     167     206 .. 0.67
   6 ?   -0.3   0.0      0.76   1.5e+03      16      35 ..     212     231 ..     209     244 .. 0.69
   7 !    6.8   0.0    0.0046       9.2      17      52 ..     243     276 ..     238     282 .. 0.88
   8 ?   -3.0   0.0       5.5   1.1e+04      16      33 ..     314     331 ..     311     337 .. 0.62
   9 ?   -1.5   0.0       1.8   3.6e+03      20      27 ..     377     384 ..     363     404 .. 0.56
  10 ?    1.5   0.1      0.21   4.3e+02      14      24 ..     411     421 ..     390     425 .. 0.63
  11 ?    4.2   0.1     0.031        62      14      35 ..     411     432 ..     406     434 .. 0.88
  12 ?    1.9   0.0      0.16   3.2e+02      15      33 ..     432     450 ..     425     454 .. 0.83
  13 ?    4.4   0.1     0.027        53      13      35 ..     466     488 ..     462     499 .. 0.87
  14 ?   -2.0   0.0       2.7   5.3e+03      17      30 ..     551     564 ..     546     568 .. 0.76
  15 ?   -0.9   0.0       1.2   2.3e+03      25      25 ..     619     619 ..     597     648 .. 0.58
  16 ?    1.3   0.0      0.25     5e+02      16      30 ..     690     704 ..     686     714 .. 0.77
  17 ?   -0.1   0.0      0.65   1.3e+03      16      27 ..     730     741 ..     716     754 .. 0.64
  18 ?   -1.4   0.0       1.7   3.3e+03      14      27 ..     778     791 ..     766     800 .. 0.71

  Alignments for each domain:
  == domain 1  score: -0.9 bits;  conditional E-value: 1.2
      Ntox33 17 kkkGidahdlkgrgksi 33
                k++G++a+  +g g s+
  KOO24070.1  2 KEAGFNAKKVRGAGYSA 18
                899*****999888765 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 0.97
      Ntox33 14 klLkkk 19
                + L++ 
  KOO24070.1 69 QELQDV 74
                334444 PP

  == domain 3  score: -0.4 bits;  conditional E-value: 0.82
      Ntox33  16 LkkkGidah 24 
                 +k  G+ ++
  KOO24070.1 121 MKAVGYSVK 129
                 334444444 PP

  == domain 4  score: -1.0 bits;  conditional E-value: 1.3
      Ntox33  16 LkkkGidahdlk..gr 29 
                 L   G+ a++lk  g+
  KOO24070.1 151 LTSVGFTAKELKegGY 166
                 4555666666664444 PP

  == domain 5  score: 2.1 bits;  conditional E-value: 0.14
      Ntox33  16 LkkkGidahdlkgr 29 
                 Lk+ G+ a++lk  
  KOO24070.1 182 LKDGGFAARELKRG 195
                 56666666666533 PP

  == domain 6  score: -0.3 bits;  conditional E-value: 0.76
      Ntox33  16 LkkkGidahdlkgrgksisr 35 
                 L + G+ a +lkg g s++ 
  KOO24070.1 212 LMEGGFSAIELKGAGLSVGE 231
                 66667777777777766654 PP

  == domain 7  score: 6.8 bits;  conditional E-value: 0.0046
      Ntox33  17 kkkGidahdlkgrgksisrlDlykDkkGnlyikpKG 52 
                 +++G++a++lk  g ++ + Dly  ++G   i +KG
  KOO24070.1 243 RDAGFNAQQLKDVGFAA-K-DLYAEGQGFAAIELKG 276
                 689********999875.6.9*******99999998 PP

  == domain 8  score: -3.0 bits;  conditional E-value: 5.5
      Ntox33  16 LkkkGidahdlkgrgksi 33 
                 L+ +G+ a +l  +g  +
  KOO24070.1 314 LRPAGFTASELEEYGFTA 331
                 566677777776666544 PP

  == domain 9  score: -1.5 bits;  conditional E-value: 1.8
      Ntox33  20 Gidahdlk 27 
                 G  a+dlk
  KOO24070.1 377 GCTAKDLK 384
                 44444444 PP

  == domain 10  score: 1.5 bits;  conditional E-value: 0.21
      Ntox33  14 klLkkkGidah 24 
                 k Lkk+G++ +
  KOO24070.1 411 KELKKAGYNSR 421
                 34555555555 PP

  == domain 11  score: 4.2 bits;  conditional E-value: 0.031
      Ntox33  14 klLkkkGidahdlkgrgksisr 35 
                 k Lkk+G++ ++l   g s+s+
  KOO24070.1 411 KELKKAGYNSRQLGIAGFSASQ 432
                 67***********999988887 PP

  == domain 12  score: 1.9 bits;  conditional E-value: 0.16
      Ntox33  15 lLkkkGidahdlkgrgksi 33 
                  Lk++G+ a+d k  g ++
  KOO24070.1 432 QLKEAGYSAKDVKDAGFRA 450
                 69**********9777655 PP

  == domain 13  score: 4.4 bits;  conditional E-value: 0.027
      Ntox33  13 iklLkkkGidahdlkgrgksisr 35 
                 ik Lk+ G+  ++lk  g s+s 
  KOO24070.1 466 IKDLKDDGFSLKELKEGGCSASE 488
                 899************77777764 PP

  == domain 14  score: -2.0 bits;  conditional E-value: 2.7
      Ntox33  17 kkkGidahdlkgrg 30 
                 + +G+ ++dlk  g
  KOO24070.1 551 NSAGFTVRDLKAGG 564
                 679*******9655 PP

  == domain 15  score: -0.9 bits;  conditional E-value: 1.2
      Ntox33  25 d 25 
                 +
  KOO24070.1 619 E 619
                 2 PP

  == domain 16  score: 1.3 bits;  conditional E-value: 0.25
      Ntox33  16 LkkkGidahdlkgrg 30 
                 Lk  G+da +lk  g
  KOO24070.1 690 LKAVGYDASELKAGG 704
                 899999999999544 PP

  == domain 17  score: -0.1 bits;  conditional E-value: 0.65
      Ntox33  16 LkkkGidahdlk 27 
                 L++ G+ a++lk
  KOO24070.1 730 LEDVGFSAKELK 741
                 455555555555 PP

  == domain 18  score: -1.4 bits;  conditional E-value: 1.7
      Ntox33  14 klLkkkGidahdlk 27 
                 k Lk+ G+ + +lk
  KOO24070.1 778 KELKEGGFSIAELK 791
                 55777777777776 PP

>> Sigma54_CBD  Sigma-54 factor, core binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.2   0.0      0.29   5.7e+02     100     133 ..      19      52 ..      16      55 .. 0.78
   2 ?    0.6   0.0      0.23   4.5e+02      33      82 ..      64     111 ..      35     117 .. 0.64
   3 ?   -0.8   0.0      0.61   1.2e+03      39      83 ..     150     193 ..     117     194 .. 0.62
   4 ?    1.3   0.0      0.13   2.7e+02      19      83 ..     313     384 ..     310     386 .. 0.78
   5 ?   -0.9   0.0      0.66   1.3e+03      30      53 ..     423     446 ..     411     490 .. 0.58
   6 ?   -0.9   0.0      0.62   1.2e+03      28      65 ..     457     502 ..     449     522 .. 0.63
   7 !    5.4   0.0    0.0074        15      20      83 ..     580     641 ..     577     683 .. 0.76
   8 ?   -2.9   0.0       2.6   5.1e+03      43      83 ..     733     781 ..     709     782 .. 0.56

  Alignments for each domain:
  == domain 1  score: 0.2 bits;  conditional E-value: 0.29
  Sigma54_CBD 100 lellakkdlkklakklglseeelqealelIkkLn 133
                  lell +    +++k+ g+s  +l+ea   I++L+
   KOO24070.1  19 LELLDAGWTVEICKNAGCSARDLREANCTIRELK 52 
                  6667777777888888888888888888888876 PP

  == domain 2  score: 0.6 bits;  conditional E-value: 0.23
  Sigma54_CBD  33 aeylienLdedGYleesleeiaeeleeeeveavlkliqsldPaGvgArdl 82 
                  a +  ++L + GY  e+l +  +  + +e++ + + + +l  aG+ A  l
   KOO24070.1  64 AGFSAQELQDVGYGAEELRAAGA--SLAELTGAGASVAELKAAGISATGL 111
                  33334555555555555555444..4488888888899999999888766 PP

  == domain 3  score: -0.8 bits;  conditional E-value: 0.61
  Sigma54_CBD  39 nLdedGYleesleeiaeel......eeeeveavlkliqsldPaGvgArdlq 83 
                  +L + G+  ++       l      +++e++++  ++++l   G +Ar+l+
   KOO24070.1 150 ELTSVGFTAKE-------LkeggysSAQELREAGCMVHELKDGGFAARELK 193
                  23333333333.......255556678888899999999999999998875 PP

  == domain 4  score: 1.3 bits;  conditional E-value: 0.13
  Sigma54_CBD  19 QlallelseeereiaeylienLdedGYleesleeiaeel.......eeeeveavlkliqsldPaGvgArdlq 83 
                  Ql+   ++  e e   +   +L   G+l ++l+ei ++        +++e+++       l  +G+ A+dl+
   KOO24070.1 313 QLRPAGFTASELEEYGFTAAELKAGGFLPTELKEIFQSQelvqagfTPSEMRDGGYTATDLKAVGCTAKDLK 384
                  5555555666666666667789999*********99887778888888888888888889999999999886 PP

  == domain 5  score: -0.9 bits;  conditional E-value: 0.66
  Sigma54_CBD  30 reiaeylienLdedGYleesleei 53 
                    ia +   +L e+GY  +++++ 
   KOO24070.1 423 LGIAGFSASQLKEAGYSAKDVKDA 446
                  555555556666666666655542 PP

  == domain 6  score: -0.9 bits;  conditional E-value: 0.62
  Sigma54_CBD  28 eereiaeylienLdedGYleesleeiaeel........eeeeveav 65 
                   e +++ + i+ L +dG+  ++l+e   ++        +++e+++v
   KOO24070.1 457 SELRAGGFTIKDLKDDGFSLKELKEGGCSAselrgsgfSAKELQSV 502
                  5667778889999999999999888433333335555555555555 PP

  == domain 7  score: 5.4 bits;  conditional E-value: 0.0074
  Sigma54_CBD  20 lallelseeereiaeylienLdedGYleesleeiaeeleeeeveavlkliqsldPaGvgArdlq 83 
                  l++ +++ ++ +++ y + +L ++GY+ ++l++  +++++ e++a+   +++l  +G  A dl+
   KOO24070.1 580 LKAADFTATDLRAVGYSLAELRSAGYMAKELKA--AQFTAGELKAAGVSVKELRTIGFSALDLR 641
                  666778888888888888888899999888887..55667778887777888877777777776 PP

  == domain 8  score: -2.9 bits;  conditional E-value: 2.6
  Sigma54_CBD  43 dGYleeslee........iaeeleeeeveavlkliqsldPaGvgArdlq 83 
                   G+  ++l+e        +a+ +++ee++++   + +l  +G   ++l+
   KOO24070.1 733 VGFSAKELKEggfgthdmMAAAFTAEELRSAGCTVDELKAVGMTLKELK 781
                  4444444444333333334444466666666666666666666555555 PP

>> DUF2639  Protein of unknown function (DUF2639)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.4   0.0     0.019        38       9      19 ..      98     108 ..      95     115 .. 0.87
   2 ?   -1.3   0.0       1.2   2.4e+03       9      17 ..     128     136 ..     125     143 .. 0.82
   3 ?    0.8   0.0      0.26   5.2e+02      10      21 ..     170     181 ..     169     185 .. 0.86
   4 ?   -3.2   0.0       4.6   9.3e+03       9      16 ..     229     236 ..     229     238 .. 0.87
   5 ?   -1.1   0.1         1     2e+03      10      16 ..     411     417 ..     401     420 .. 0.70
   6 ?   -3.3   0.0       4.9   9.7e+03      10      18 ..     517     525 ..     516     530 .. 0.78
   7 ?    1.0   0.0      0.23   4.6e+02      11      24 ..     619     632 ..     618     635 .. 0.80
   8 ?   -2.6   0.0         3     6e+03      10      21 ..     738     749 ..     737     750 .. 0.87
   9 ?   -0.9   0.0      0.86   1.7e+03       9      18 ..     767     776 ..     762     783 .. 0.81

  Alignments for each domain:
  == domain 1  score: 4.4 bits;  conditional E-value: 0.019
     DUF2639   9 VkeLKkaGIrk 19 
                 V+eLK+aGI+ 
  KOO24070.1  98 VAELKAAGISA 108
                 9********86 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 1.2
     DUF2639   9 VkeLKkaGI 17 
                 VkeLK aG 
  KOO24070.1 128 VKELKGAGF 136
                 9****9995 PP

  == domain 3  score: 0.8 bits;  conditional E-value: 0.26
     DUF2639  10 keLKkaGIrkhe 21 
                 +eL++aG  +he
  KOO24070.1 170 QELREAGCMVHE 181
                 8*********96 PP

  == domain 4  score: -3.2 bits;  conditional E-value: 4.6
     DUF2639   9 VkeLKkaG 16 
                 V eLK+aG
  KOO24070.1 229 VGELKAAG 236
                 779***99 PP

  == domain 5  score: -1.1 bits;  conditional E-value: 1
     DUF2639  10 keLKkaG 16 
                 keLKkaG
  KOO24070.1 411 KELKKAG 417
                 5777776 PP

  == domain 6  score: -3.3 bits;  conditional E-value: 4.9
     DUF2639  10 keLKkaGIr 18 
                 +eL+k G +
  KOO24070.1 517 AELRKIGFQ 525
                 799999976 PP

  == domain 7  score: 1.0 bits;  conditional E-value: 0.23
     DUF2639  11 eLKkaGIrkhegrK 24 
                 eLK+aG+++ e r 
  KOO24070.1 619 ELKAAGVSVKELRT 632
                 8******9887665 PP

  == domain 8  score: -2.6 bits;  conditional E-value: 3
     DUF2639  10 keLKkaGIrkhe 21 
                 keLK+ G  +h+
  KOO24070.1 738 KELKEGGFGTHD 749
                 89***9999886 PP

  == domain 9  score: -0.9 bits;  conditional E-value: 0.86
     DUF2639   9 VkeLKkaGIr 18 
                 V eLK+ G +
  KOO24070.1 767 VDELKAVGMT 776
                 89****9975 PP

>> SAP  SAP domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.7   0.0     0.013        26      11      26 ..      99     114 ..      98     114 .. 0.93
   2 ?   -3.3   0.0       4.1   8.1e+03       2      11 ..     452     461 ..     452     461 .. 0.84
   3 ?   -2.4   0.0       2.2   4.5e+03       4      10 ..     534     540 ..     533     541 .. 0.85
   4 ?   -2.4   0.0       2.1   4.2e+03       4      11 ..     555     562 ..     554     562 .. 0.88
   5 ?   -2.3   0.1         2     4e+03       5      11 ..     766     772 ..     766     773 .. 0.89
   6 ?   -2.1   0.1       1.7   3.4e+03       4      11 ..     775     782 ..     774     782 .. 0.89

  Alignments for each domain:
  == domain 1  score: 4.7 bits;  conditional E-value: 0.013
                 HHHHHTT--TTS-HHH CS
         SAP  11 eeLkkrGLptsGkKae 26 
                 +eLk+ G++ +G+K e
  KOO24070.1  99 AELKAAGISATGLKSE 114
                 69************87 PP

  == domain 2  score: -3.3 bits;  conditional E-value: 4.1
                 TT--HHHHHH CS
         SAP   2 skltVaeLKe 11 
                 s +t +eL++
  KOO24070.1 452 SAFTLSELRA 461
                 57999***96 PP

  == domain 3  score: -2.4 bits;  conditional E-value: 2.2
                 --HHHHH CS
         SAP   4 ltVaeLK 10 
                  tVaeL+
  KOO24070.1 534 YTVAELR 540
                 59****9 PP

  == domain 4  score: -2.4 bits;  conditional E-value: 2.1
                 --HHHHHH CS
         SAP   4 ltVaeLKe 11 
                 +tV +LK+
  KOO24070.1 555 FTVRDLKA 562
                 7******6 PP

  == domain 5  score: -2.3 bits;  conditional E-value: 2
                 -HHHHHH CS
         SAP   5 tVaeLKe 11 
                 tV+eLK+
  KOO24070.1 766 TVDELKA 772
                 8*****7 PP

  == domain 6  score: -2.1 bits;  conditional E-value: 1.7
                 --HHHHHH CS
         SAP   4 ltVaeLKe 11 
                 +t +eLKe
  KOO24070.1 775 MTLKELKE 782
                 9*****97 PP

>> MerR_1  MerR HTH family regulatory protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.0       1.7   3.4e+03      48      55 ..      47      54 ..      29      64 .. 0.61
   2 ?   -2.5   0.0       2.9   5.8e+03      51      64 ..     432     445 ..     431     446 .. 0.85
   3 ?    2.4   0.0     0.082   1.6e+02      48      64 ..     465     481 ..     464     481 .. 0.91
   4 ?   -1.7   0.0       1.6   3.2e+03      49      65 ..     506     522 ..     505     522 .. 0.90
   5 ?    1.3   0.0      0.19   3.8e+02      49      62 ..     777     790 ..     765     793 .. 0.65

  Alignments for each domain:
  == domain 1  score: -1.8 bits;  conditional E-value: 1.7
                HHHHHHHT CS
      MerR_1 48 likyLlkr 55
                +i++L++ 
  KOO24070.1 47 TIRELKEV 54
                35555555 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 2.9
                 HHHHTT--GGG--- CS
      MerR_1  51 yLlkrGltlkgikk 64 
                 +L+++G++ k++k+
  KOO24070.1 432 QLKEAGYSAKDVKD 445
                 6899****999996 PP

  == domain 3  score: 2.4 bits;  conditional E-value: 0.082
                 HHHHHHHTT--GGG--- CS
      MerR_1  48 likyLlkrGltlkgikk 64 
                 +ik L++ G++lk+ k+
  KOO24070.1 465 TIKDLKDDGFSLKELKE 481
                 59***********9985 PP

  == domain 4  score: -1.7 bits;  conditional E-value: 1.6
                 HHHHHHTT--GGG---X CS
      MerR_1  49 ikyLlkrGltlkgikkl 65 
                 i +L++ G++ ++ +k+
  KOO24070.1 506 ISHLRDGGFSAAELRKI 522
                 789********999986 PP

  == domain 5  score: 1.3 bits;  conditional E-value: 0.19
                 HHHHHHTT--GGG- CS
      MerR_1  49 ikyLlkrGltlkgi 62 
                  k+L++ G+++++ 
  KOO24070.1 777 LKELKEGGFSIAEL 790
                 46677777777665 PP

>> Bradykinin  Bradykinin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.9   0.1       0.2   3.9e+02       6      10 ..     134     138 ..     132     139 .. 0.89
   2 ?    5.6   0.2    0.0067        13       2       9 ..     313     320 ..     313     321 .. 0.90
   3 ?    0.4   0.1      0.29   5.8e+02       6      10 ..     356     360 ..     355     361 .. 0.93

  Alignments for each domain:
  == domain 1  score: 0.9 bits;  conditional E-value: 0.2
  Bradykinin   6 aGFTP 10 
                 aGFTP
  KOO24070.1 134 AGFTP 138
                 8**** PP

  == domain 2  score: 5.6 bits;  conditional E-value: 0.0067
  Bradykinin   2 QRRPaGFT 9  
                 Q RPaGFT
  KOO24070.1 313 QLRPAGFT 320
                 77*****9 PP

  == domain 3  score: 0.4 bits;  conditional E-value: 0.29
  Bradykinin   6 aGFTP 10 
                 aGFTP
  KOO24070.1 356 AGFTP 360
                 8***9 PP

>> DUF5568  Family of unknown function (DUF5568)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.1      0.98   1.9e+03     113     137 ..     101     129 ..      86     148 .. 0.73
   2 ?   -1.6   0.0         1     2e+03     125     143 ..     228     246 ..     219     261 .. 0.61
   3 ?    0.4   0.0      0.25   5.1e+02     109     129 ..     300     320 ..     295     329 .. 0.81
   4 ?   10.3   0.7   0.00023      0.47      45     137 ..     361     467 ..     321     481 .. 0.76
   5 ?   -2.1   0.1       1.5   2.9e+03     106     169 ..     573     598 ..     548     614 .. 0.56

  Alignments for each domain:
  == domain 1  score: -1.5 bits;  conditional E-value: 0.98
     DUF5568 113 tkaaGfkt....sPGrPlGttkaaGykvs 137
                  kaaG  +    s G  l   ka Gy v 
  KOO24070.1 101 LKAAGISAtglkSEGIALSEMKAVGYSVK 129
                 55555543222278999999999999885 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 1
     DUF5568 125 PlGttkaaGykvsPGrPPG 143
                  +G  kaaGy     r  G
  KOO24070.1 228 SVGELKAAGYAARATRDAG 246
                 4455555555544444433 PP

  == domain 3  score: 0.4 bits;  conditional E-value: 0.25
     DUF5568 109 PlGttkaaGfktsPGrPlGtt 129
                 Pl    aaGfk+   rP G t
  KOO24070.1 300 PLDELIAAGFKANQLRPAGFT 320
                 666667999999999999877 PP

  == domain 4  score: 10.3 bits;  conditional E-value: 0.00023
     DUF5568  45 s.........qahkamacqrqdalnet....kpqtvslrslekkedskkkkalgrsGkrGrPsGttk.saGyrtstGrPlGttkaaGfktsPGrPlGtt 129
                 s         +  ka+ c  +d +n      ++q+ +  + e k  + k k+l ++G   r  G +  sa     +G      k aGf+++    l   
  KOO24070.1 361 SemrdggytaTDLKAVGCTAKDLKNGGytgtELQAAGFSADELKAAGFKGKELKKAGYNSRQLGIAGfSASQLKEAGYSAKDVKDAGFRAASAFTLSEL 459
                 4444444444789**********997533336788888888888899999**************754256666677888888999*****999999999 PP

     DUF5568 130 kaaGykvs 137
                 +a G+ + 
  KOO24070.1 460 RAGGFTIK 467
                 99999876 PP

  == domain 5  score: -2.1 bits;  conditional E-value: 1.5
     DUF5568 106 tGrPlGttkaaGfktsPGrPlGttkaaGykvsPGrPPGsikalsrlnkleysacsgaafPysvm 169
                 +G P    kaa f ++  r +G                                       s++
  KOO24070.1 573 AGLPASELKAADFTATDLRAVGY--------------------------------------SLA 598
                 45566666666666555444443......................................222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (805 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       301  (0.0167884); expected 358.6 (0.02)
Passed bias filter:                      260  (0.0145016); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.71u 0.31s 00:00:01.02 Elapsed: 00:00:00.45
# Mc/sec: 5319.59
//
Query:       KOO24071.1  [L=101]
Description: hypothetical protein Ctob_003267 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (101 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       238  (0.0132746); expected 358.6 (0.02)
Passed bias filter:                      144  (0.00803168); expected 358.6 (0.02)
Passed Vit filter:                         7  (0.000390429); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.25s 00:00:00.59 Elapsed: 00:00:00.40
# Mc/sec: 760.89
//
Query:       KOO24072.1  [L=134]
Description: hypothetical protein Ctob_003266 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (134 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       407  (0.0227007); expected 358.6 (0.02)
Passed bias filter:                      237  (0.0132188); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.26s 00:00:00.63 Elapsed: 00:00:00.41
# Mc/sec: 978.29
//
Query:       KOO24073.1  [L=727]
Description: protein of unknown function duf1538 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.4e-96  321.8  29.7    3.3e-52  176.9  15.7    2.3  2  DUF1538       Protein of unknown function (DUF1538)


Domain annotation for each model (and alignments):
>> DUF1538  Protein of unknown function (DUF1538)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  150.8   6.0   1.7e-48   3.1e-44       2     211 .]      42     282 ..      41     282 .. 0.91
   2 !  176.9  15.7   1.8e-56   3.3e-52      15     210 ..     493     700 ..     490     701 .. 0.97

  Alignments for each domain:
  == domain 1  score: 150.8 bits;  conditional E-value: 1.7e-48
     DUF1538   2 vlvlllfqllvlklslkelaeillGlllvvlGlalFllGvelgllplGeqvgsklakkkklllvllvafllGflvtlAEPalsvlakqveevsagaik. 99 
                 +l l+l  +++++  ++ + e++ G+l++++Gl+lF+  ++++++pl+e +g+++++k   +  l++a++lG+l t+AEPal  l+  ++ v++++ + 
  KOO24073.1  42 TLQLVLTIAIFFRRAPNAPGELVGGMLCAIVGLTLFTDSLRICVMPLAELIGREMPRKLPQAATLFIALCLGILCTYAEPALASLRPLARLVERSKTPy 140
                 666788889999********************************************************************************9999999 PP

     DUF1538 100 ........kkvlilavaiGvglaialgvlrillgislkylllpgyllvllltllvpke......fvaiafDsgGvttgpitvplilalglGv....... 177
                          + li+++++Gvg+a+++g+lr+  ++++k+++l++ + +l+++++++        ++++a+D+g+vttgp++vp++lalg+G+       
  KOO24073.1 141 lyivlndfLEPLIFSIGLGVGAAAIIGILRFQNEWNMKKVILAAITPCLICSCYMQWGnpelkpILGLAWDCGAVTTGPVSVPVLLALGIGAmktskek 239
                 99***999899*********************************99999999998752333455****************************6666666 PP

     DUF1538 178 ....asal.......egknalvdgFGlvalaslgPilavlllgll 211
                        +       +g++++ dgFG+v+lasl+P+lav+llg++
  KOO24073.1 240 klarR--MlqqavlgGGQKPALDGFGIVTLASLLPVLAVQLLGIV 282
                 66550..15555567999*************************96 PP

  == domain 2  score: 176.9 bits;  conditional E-value: 1.8e-56
     DUF1538  15 lslkelaeillGlllvvlGlalFllGvelgllplGeqvgsklakkk................klllvllvafllGflvtlAEPalsvlakqveevsaga 97 
                  s ++++ +l+G+++  +G++lF+lG+++g++ +G+qvg  l++++                +++l +++ f+lGfl+t AEPal+vl k+ve++s+ga
  KOO24073.1 493 SSWANARPLLFGIFMGQIGMVLFNLGLTYGFTAIGDQVGLLLPAAFmsvsgepsspfypyggGVALTIITVFILGFLATRAEPALNVLGKTVEKLSEGA 591
                 567788999****************************************************99************************************ PP

     DUF1538  98 ikkkvlilavaiGvglaialgvlrillgislkylllpgyllvllltllvpkefvaiafDsgGvttgpitvplilalglGvasalegknalvdgFGlval 196
                 +++k+l+++v++Gv++++  g ++il+g sl  ++l  y  +l+lt+++++++  ia+Ds+Gvttgp+tvp++l+ g+G+++a++    +++gFG++++
  KOO24073.1 592 FSRKLLVYSVCVGVAVGMSAGATKILFGASLIGFILGKYGSALALTYFSSEDMATIAWDSAGVTTGPVTVPFVLSTGIGFSKAVG----AEEGFGMLTC 686
                 ************************************************************************************9....8********* PP

     DUF1538 197 aslgPilavlllgl 210
                 as+ Pi++vl++ +
  KOO24073.1 687 ASVSPIITVLIVDI 700
                 **********9865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (727 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       459  (0.025601); expected 358.6 (0.02)
Passed bias filter:                      241  (0.0134419); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.56u 0.27s 00:00:00.83 Elapsed: 00:00:00.43
# Mc/sec: 5049.36
//
Query:       KOO24074.1  [L=151]
Description: hypothetical protein Ctob_003264 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.4e-08   35.1   0.0    2.3e-08   34.5   0.0    1.3  1  DUF1279   Protein of unknown function (DUF1279)


Domain annotation for each model (and alignments):
>> DUF1279  Protein of unknown function (DUF1279)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.5   0.0   1.3e-12   2.3e-08       2      92 .]      29     116 ..      28     116 .. 0.92

  Alignments for each domain:
  == domain 1  score: 34.5 bits;  conditional E-value: 1.3e-12
     DUF1279   2 klKelfkkYGkvalgvylsislidlgicYllvks.gvd.veelleklklsvkvsskkvekksksswgefaiAYaihKilipiRlpiTlaitpl 92 
                 ++K+l+ +YG +al++++s+ +++l ++Y l+    +d ++ +l +l+l+      +++  ++  +g ++  + i  ++ p+Rl +T+a tp+
  KOO24074.1  29 SIKALLSEYGLIALVFHFSVWCTSLATVYALLTLgLADsLAGVLGRLGLD----GGALNG-AAGLAGRATATFGIVEAIGPARLALTVAATPK 116
                 58********************************66789***********....666666.667999************************95 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (151 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       715  (0.0398795); expected 358.6 (0.02)
Passed bias filter:                      458  (0.0255452); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.24s 00:00:00.64 Elapsed: 00:00:00.39
# Mc/sec: 1150.07
//
Query:       KOO24075.1  [L=157]
Description: glutathione S-transferase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.3e-14   52.0   0.3    7.9e-14   51.7   0.3    1.2  1  MAPEG     MAPEG family


Domain annotation for each model (and alignments):
>> MAPEG  MAPEG family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.7   0.3   4.4e-18   7.9e-14      37     128 ..      42     145 ..       2     147 .. 0.74

  Alignments for each domain:
  == domain 1  score: 51.7 bits;  conditional E-value: 4.4e-18
                 .............SH....HHHHHHHHHHHHHHHHHHHHHHHHHHHHH.T..........-HHHHHHHHHHHHHHHHHHHHHHHH-..SGGGHHHHHHH CS
       MAPEG  37 a........pralddklppklqrairahgNflEyvplfllavllaeltga..........etglaallaaafvvaRvlhalgyiaggpppgRslgfllt 117
                 +        +    ++ p++++r +r   N+lE++p+ l+++++a ++ +          e+  +++l+ +++++R+++a++y+ g  +p+R+++f+++
  KOO24075.1  42 PpedallgtQ----PPVPDDIKRRMRLIMNNLENAPMDLALFWAAFIS-VlvqsssggkeEALALNVLLPIYTAGRLVYAVAYARG-LQPLRTICFATS 134
                 1444443322....44567****************************9.335566666645999**********************.************ PP

                 HHHHHHHHHHH CS
       MAPEG 118 llvllvlslla 128
                 + +++++++ +
  KOO24075.1 135 TSCTVAAAGVL 145
                 *****998765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (157 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       580  (0.0323498); expected 358.6 (0.02)
Passed bias filter:                      339  (0.0189079); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.25s 00:00:00.64 Elapsed: 00:00:00.41
# Mc/sec: 1157.03
//
Query:       KOO24076.1  [L=344]
Description: hypothetical protein Ctob_003268 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    6.5e-16   59.2   0.1    9.7e-16   58.7   0.1    1.3  1  Lipase_GDSL_2  GDSL-like Lipase/Acylhydrolase family
      1e-08   35.4   0.0    3.4e-08   33.7   0.0    1.8  1  Lipase_GDSL    GDSL-like Lipase/Acylhydrolase


Domain annotation for each model (and alignments):
>> Lipase_GDSL_2  GDSL-like Lipase/Acylhydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.7   0.1   1.1e-19   9.7e-16       1     178 [.     115     317 ..     115     318 .. 0.80

  Alignments for each domain:
  == domain 1  score: 58.7 bits;  conditional E-value: 1.1e-19
                    EEESHHHHTCTTB.CCHCHHCCCCCCCHHHTT-EEEEE..EEHCCH-H...HHHHHHHH.CTGGG-T.....SEEEEE--CCC.....CCTT--HH CS
  Lipase_GDSL_2   1 alGDSiTaGygad.gggrsypaylarllaarlgldvvnn.lgvsGatt.allrllerlr.dllrlkp.....dlvtiliGtND.....lgrgvpaa 82 
                    ++GDS+  G+g d ++g + p+ +a+ la+ l++dv +   g +G+ + +l++ll+ ++ ++ ++++     dlv++  G ND      g g +a+
     KOO24076.1 115 FIGDSLVTGVGCDrETGPAMPRACAEFLARTLHVDVQWTaIGKTGEDVaGLAQLLPAVGsAVRQAQAvgdriDLVVVICGLNDfkyayQGLGRTAS 210
                    79*********99977777777779999999988888878999999998888888888876666666999*************8888877777778 PP

                    HHHHH..HHHHHHHHCCC...G.EEE....CEEEEE-TTT-TTSTCCHHHHHHHHHHHHHHHHHH........CT-EEE-HHHHHHHCCCCCGGBB CS
  Lipase_GDSL_2  83 aaaandnleelidalraaapga.ril....vlgplpptpeaaadarelnaviaaynealrevaae........egvpfvDlhdaladsgerladll 165
                     ++a   l +l+d +++  + a +++     +++ p+++ +++ +  ++  +a ++++  e  ++          + fv   +a  +   + + ++
     KOO24076.1 211 GFRAT--LSSLVDSIHQETGTAcPVVlpalPITYAPVFGGDWPVTVTMRMLLANIAALWDEQKEAlcklpnmgGRISFVRNQPAEDAAFWHEVQYW 304
                    88877..***********55554777798888888888888888888777777777776666666544566666666666677777777888999* PP

                    TTS.SSB-HHHHH CS
  Lipase_GDSL_2 166 addglHPnaaGyr 178
                    a+dg+HPn++Gy 
     KOO24076.1 305 ARDGIHPNDKGYT 317
                    ************6 PP

>> Lipase_GDSL  GDSL-like Lipase/Acylhydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.7   0.0   3.8e-12   3.4e-08       1     200 []     113     323 ..     113     323 .. 0.72

  Alignments for each domain:
  == domain 1  score: 33.7 bits;  conditional E-value: 3.8e-12
                  EEEEESHHHHTT............THHHHHHHCCCCEECCCTTC.GCEEEEEEECTTHHHHHHHCCH...ECTTTECHHHHHCTTSEEEEE--CTCC- CS
                  xxxxxxxxxxxx............xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Lipase_GDSL   1 ivafGDSltdGd............gaatlntiqlktpknlnefdlaldrianignkgasdnelqqll...nkyplkseqlkalhpdlviislGtNDsn 83 
                  i+++GDSl+ G+            + a + +  l+++  +          + ig +g ++  l+qll   ++ ++++ q+ + + dlv++  G ND+ 
   KOO24076.1 113 ILFIGDSLVTGVgcdretgpamprACAEFLARTLHVDVQW----------TAIGKTGEDVAGLAQLLpavGSAVRQA-QAVGDRIDLVVVICGLNDF- 198
                  89**********9999999988887777777777777766..........567899999999999998866666666.999999*************. PP

                  EECSSCTTTCEEHHHHHHHHHHHHHHHHHHHHTTEEEEEEE-SSTCH....CTCCCCHCCHHHHHHHHHHHHHHHHHHHH...............HCT CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx....xxxxxxxxxxxxxxxxxxxxxxxxxxxxx...............xxx RF
  Lipase_GDSL  84 lgkkstdaakkeaeeyiknlreaikelkeegapkaivvlvsppglgp....qeekdakklgekgnefvgeynqrlndlae...............kdg 162
                    k  ++  +++a+ +++ l ++++ +++e    + vvl ++p  +      +  ++ +++ +++++++ ++++ ++l++                ++
   KOO24076.1 199 --KYAYQGLGRTASGFRATLSSLVDSIHQETGTACPVVLPALPITYApvfgGDWPVTVTMRMLLANIAALWDEQKEALCKlpnmggrisfvrnqpAED 294
                  ..**************************8877777777777776666688844444444555555555555555555555444433333333222333 PP

                  EEEECHHHHHHHTHCCGCHCH..TSSSB-HHHHHHHHHHH CS
                  xxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxx RF
  Lipase_GDSL 163 favvDlydelqglsgieqlka..DglHpsekgyeklaell 200
                   a++   +            +  Dg+Hp++kgy   +e++
   KOO24076.1 295 AAFWHEVQY-----------WarDGIHPNDKGYTVWGEHI 323
                  333333333...........1339**********999986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (344 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       323  (0.0180155); expected 358.6 (0.02)
Passed bias filter:                      254  (0.014167); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.45u 0.24s 00:00:00.69 Elapsed: 00:00:00.40
# Mc/sec: 2592.04
//
Query:       KOO24077.1  [L=225]
Description: pyruvate dehydrogenase kinase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.7e-06   28.5   0.0    3.8e-06   27.4   0.0    1.5  1  HATPase_c    Histidine kinase-, DNA gyrase B-, and HSP90-like
  ------ inclusion threshold ------
      0.017   14.9   0.0       0.03   14.1   0.0    1.4  1  HATPase_c_3  Histidine kinase-, DNA gyrase B-, and HSP90-like
       0.13   12.3   0.0       0.19   11.7   0.0    1.4  1  HATPase_c_2  Histidine kinase-like ATPase domain


Domain annotation for each model (and alignments):
>> HATPase_c  Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.4   0.0   6.4e-10   3.8e-06       3     108 ..      29     164 ..      27     169 .. 0.70

  Alignments for each domain:
  == domain 1  score: 27.4 bits;  conditional E-value: 6.4e-10
                 HHHHHHHHHHHHHHHHHH..........HSTTT........EEEEEEEEEETEEEEEEEESSSSSTTHHHT..............GTCSTTCH...... CS
   HATPase_c   3 ekrLrqiisnlvdNavkf..........atkag........eieveikaseddlvisveDnGiGipkedlk..............klfekfsq...... 63 
                 +++Lr ++ +l++Na k+          +   g         i+v + +s+ +++i+v D   G+p++ l               k             
  KOO24077.1  29 PSHLRFVVGELLSNASKAtlrhvssqsgS---GrtvdlesvPIRVIVAVSDANVTIKVADQAGGMPRSGLAdiwsyrsmhtdrnwK------Vatdrkv 118
                 5789999**********988888654330...13333332344666666778*******************777776444444442......0333333 PP

                 ..HCSTCHT....STSSSHHHHHHHHHHHHTTTEEEEEEETTTEEEEEEEE CS
   HATPase_c  64 ..ddstkrg....gggtGlGlsivkklvelmgGeiwvesepgrGttftftl 108
                         +       +GlGl +++ +++ +gG++++   +g Gt+ ++tl
  KOO24077.1 119 lpV-----SvgdaNWKVGLGLPLARLYAKYFGGTLHLAPMEGYGTDGYITL 164
                 321.....022225689*********999********99999999966665 PP

>> HATPase_c_3  Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   0.0   5.1e-06      0.03       4      63 ..      33     108 ..      30     140 .. 0.79

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 5.1e-06
  HATPase_c_3   4 ekAlaelvdNsldAdaen.................vkievnknrgktgeivieDdGkGmseeelknalrlatsskea 63 
                  ++++ el+ N+  A  ++                 + + v   + ++ +i++ D + Gm+++ l +  ++ + ++++
   KOO24077.1  33 RFVVGELLSNASKATLRHvssqsgsgrtvdlesvpIRVIVAVSD-ANVTIKVADQAGGMPRSGLADIWSYRSMHTDR 108
                  68999****************************88555555443.568**************999965555555553 PP

>> HATPase_c_2  Histidine kinase-like ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   3.2e-05      0.19      31      78 ..      31      90 ..      19     138 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 3.2e-05
  HATPase_c_2 31 eirlaveEactNavehayleape............gpvevrlesdeealtvevaDsGpgf 78
                 ++r++v+E+++Na ++  ++ ++             p++v + +++  +t++vaD++ g 
   KOO24077.1 31 HLRFVVGELLSNASKATLRHVSSqsgsgrtvdlesVPIRVIVAVSDANVTIKVADQAGGM 90
                 6899****************9953666644444333335559999999******998774 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (225 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       275  (0.0153383); expected 358.6 (0.02)
Passed bias filter:                      253  (0.0141112); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.39u 0.24s 00:00:00.63 Elapsed: 00:00:00.38
# Mc/sec: 1785.78
//
Query:       KOO24078.1  [L=85]
Description: ankyrin unc44 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    7.1e-10   39.0   0.0    2.7e-06   27.5   0.0    2.1  2  Ank_5     Ankyrin repeats (many copies)
    2.6e-09   37.4   0.0    3.6e-06   27.4   0.0    2.1  2  Ank_4     Ankyrin repeats (many copies)
    8.2e-08   31.9   0.0    0.00077   19.7   0.0    3.0  3  Ank_3     Ankyrin repeat
    8.5e-08   32.7   0.0      1e-07   32.4   0.0    1.1  1  Ank_2     Ankyrin repeats (3 copies)
      0.005   17.2   0.3        2.5    8.7   0.0    3.0  3  Ank       Ankyrin repeat


Domain annotation for each model (and alignments):
>> Ank_5  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.5   0.0   7.6e-10   2.7e-06       1      49 [.      10      59 ..      10      60 .. 0.95
   2 !   14.2   0.0   1.2e-05     0.042       3      36 ..      47      79 ..      45      84 .. 0.89

  Alignments for each domain:
  == domain 1  score: 27.5 bits;  conditional E-value: 7.6e-10
       Ank_5  1 Llehg.padvnrldgggntpLhvAakygaadvvrlLlargadlnltdsrG 49
                L+ehg p d  ++  gg tp+ +A+++g ++++++L   ga+l++t ++G
  KOO24078.1 10 LHEHGaPLDAIAEGDGGATPFLTACSNGKLEILIWLKQAGANLKATGDEG 59
                89***********************************9999999998887 PP

  == domain 2  score: 14.2 bits;  conditional E-value: 1.2e-05
       Ank_5  3 ehgpadvnrldgggntpLhvAakygaadvvrlLl 36
                ++g a++ ++  +g+  L +Aa+ g++ vv++L+
  KOO24078.1 47 QAG-ANLKATGDEGQDGLSIAAREGYLKVVKWLH 79
                566.8999999**********************9 PP

>> Ank_4  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.4   0.0     1e-09   3.6e-06      14      54 ..       4      45 ..       1      45 [. 0.90
   2 !    9.8   0.0   0.00034       1.2      19      55 .]      44      79 ..      44      79 .. 0.86

  Alignments for each domain:
  == domain 1  score: 27.4 bits;  conditional E-value: 1e-09
       Ank_4 14 lelvrlLlekgadinaqdnrs.GetalhiAakrgnveilklL 54
                +++++lL+e+ga ++a + ++ G t++  A+++g++eil++L
  KOO24078.1  4 VRMAQLLHEHGAPLDAIAEGDgGATPFLTACSNGKLEILIWL 45
                689**************8866266*****************9 PP

  == domain 2  score: 9.8 bits;  conditional E-value: 0.00034
       Ank_4 19 lLlekgadinaqdnrsGetalhiAakrgnveilklLl 55
                +L + ga++ a+  ++G+  l iAa+ g+++++k+L+
  KOO24078.1 44 WLKQAGANLKAT-GDEGQDGLSIAAREGYLKVVKWLH 79
                566778888888.889999999*************97 PP

>> Ank_3  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.0   0.0      0.13   4.5e+02      15      30 ..       4      18 ..       1      19 [. 0.76
   2 !   19.7   0.0   2.1e-07   0.00077       2      29 ..      26      52 ..      25      54 .. 0.92
   3 !    7.1   0.0    0.0028        10       5      23 ..      62      80 ..      58      84 .. 0.84

  Alignments for each domain:
  == domain 1  score: 2.0 bits;  conditional E-value: 0.13
       Ank_3 15 leivkfLlenkgadvn 30
                + ++++L e +ga+++
  KOO24078.1  4 VRMAQLLHE-HGAPLD 18
                567888999.9*9987 PP

  == domain 2  score: 19.7 bits;  conditional E-value: 2.1e-07
       Ank_3  2 GetpLhlAarsgnleivkfLlenkgadv 29
                G tp+ +A+++g+lei+++L +  ga++
  KOO24078.1 26 GATPFLTACSNGKLEILIWLKQ-AGANL 52
                89********************.89987 PP

  == domain 3  score: 7.1 bits;  conditional E-value: 0.0028
       Ank_3  5 pLhlAarsgnleivkfLle 23
                 L +Aar g l++vk+L e
  KOO24078.1 62 GLSIAAREGYLKVVKWLHE 80
                589**************88 PP

>> Ank_2  Ankyrin repeats (3 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.4   0.0   2.9e-11     1e-07      12      73 ..       6      79 ..       2      83 .. 0.81

  Alignments for each domain:
  == domain 1  score: 32.4 bits;  conditional E-value: 2.9e-11
       Ank_2 12 lvklLl.egadpn...k..ngktaLhyAakngnleivklLleh.....ad.ndgrtpLhyAarsghleivklLl 73
                + +lL+ +ga ++   +   g t+  +A++ng+lei+ +L ++     a+ ++g+  L +Aar+g+l++vk+L 
  KOO24078.1  6 MAQLLHeHGAPLDaiaEgdGGATPFLTACSNGKLEILIWLKQAganlkATgDEGQDGLSIAAREGYLKVVKWLH 79
                566777777666665425589********************967455522799*******************95 PP

>> Ank  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.5   0.0     0.063   2.3e+02      16      29 ..       5      19 ..       2      21 .. 0.75
   2 !    8.7   0.0    0.0007       2.5       2      30 ..      26      55 ..      25      57 .. 0.85
   3 ?    2.7   0.0     0.054   1.9e+02       6      21 ..      63      78 ..      63      84 .. 0.83

  Alignments for each domain:
  == domain 1  score: 2.5 bits;  conditional E-value: 0.063
                HHHHHHH.TTTSTTC CS
         Ank 16 riiklLL.hGAnlna 29
                r+++lL  hGA l+a
  KOO24078.1  5 RMAQLLHeHGAPLDA 19
                567755599**9887 PP

  == domain 2  score: 8.7 bits;  conditional E-value: 0.0007
                SBBHHHHHHHHTTHHHHHHHH.TTTSTTCB CS
         Ank  2 GnTPLHlAatngkkriiklLL.hGAnlnal 30
                G TP   A++ngk++i+ +L   GAnl a+
  KOO24078.1 26 GATPFLTACSNGKLEILIWLKqAGANLKAT 55
                6789999************9966***9775 PP

  == domain 3  score: 2.7 bits;  conditional E-value: 0.054
                HHHHHHHTTHHHHHHH CS
         Ank  6 LHlAatngkkriiklL 21
                L +Aa++g + ++k+L
  KOO24078.1 63 LSIAAREGYLKVVKWL 78
                56899999999***97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (85 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       193  (0.0107647); expected 358.6 (0.02)
Passed bias filter:                      183  (0.0102069); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.37u 0.22s 00:00:00.59 Elapsed: 00:00:00.40
# Mc/sec: 637.49
//
Query:       KOO24079.1  [L=334]
Description: wd-40 repeat protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.3e-48  161.2  25.0    1.6e-06   28.7   0.1    7.4  7  WD40            WD domain, G-beta repeat
    7.9e-14   51.4   7.7        1.3    9.4   0.1    7.1  7  Kelch_6         Kelch motif
      3e-10   39.6   5.3        4.5    7.4   0.1    7.1  7  Kelch_2         Kelch motif
    7.4e-09   34.8  19.4       0.47    9.0   0.3    6.9  7  Nup160          Nucleoporin Nup120/160
  ------ inclusion threshold ------
      0.022   14.9  10.0         11    6.1   0.7    5.2  7  CryBP1          CryBP1 protein
      0.029   14.2   0.2         14    5.6   0.0    3.7  4  Ribosomal_L21e  Ribosomal protein L21e
      0.038   14.3   8.8         16    5.9   0.1    4.6  4  BON             BON domain
       0.24   11.4   1.8         49    3.9   0.1    3.8  6  DUF5070         Domain of unknown function (DUF5070)
       0.36   10.8   9.7         31    4.6   0.0    5.5  6  DUF2180         Uncharacterized protein conserved in archaea 


Domain annotation for each model (and alignments):
>> WD40  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.6   0.2   3.2e-08   6.5e-05       4      38 .]       2      39 ..       1      39 [. 0.76
   2 !   20.1   0.0   4.1e-07   0.00082       2      38 .]      44      83 ..      43      83 .. 0.80
   3 !   25.9   0.1   6.1e-09   1.2e-05       2      38 .]      88     127 ..      87     127 .. 0.81
   4 !   25.8   0.0   6.6e-09   1.3e-05       1      38 []     131     171 ..     131     171 .. 0.79
   5 !   28.7   0.1   7.8e-10   1.6e-06       2      38 .]     176     215 ..     175     215 .. 0.89
   6 !   28.1   0.2   1.3e-09   2.5e-06       1      38 []     219     259 ..     219     259 .. 0.80
   7 !   22.5   1.2   7.3e-08   0.00015       4      38 .]     280     317 ..     277     317 .. 0.82

  Alignments for each domain:
  == domain 1  score: 23.6 bits;  conditional E-value: 3.2e-08
                EEEEESS.SSEEEEE.EETTSSE.EEEEETTSEEEEEE CS
        WD40  4 lrtltGH.ssvtsla.fspdgaw.lasGsdDgtvriWd 38
                lr+l+GH ++v++++     g+  ++sGs+D+tv++Wd
  KOO24079.1  2 LRVLEGHaDGVCAVSsCTVGGRVlVLSGSYDHTVKMWD 39
                799****8889999643333344346***********9 PP

  == domain 2  score: 20.1 bits;  conditional E-value: 4.1e-07
                EEEEEEESS.SSEEEEE.EETTSSEEE.EEETTSEEEEEE CS
        WD40  2 qclrtltGH.ssvtsla.fspdgawla.sGsdDgtvriWd 38
                + lr+l+GH + v  +a    dg+ ++ sGs D++v++Wd
  KOO24079.1 44 TELRELEGHtDAVLTVAsCTVDGRVVVlSGSVDQKVKMWD 83
                6799*****5557666556789999755***********9 PP

  == domain 3  score: 25.9 bits;  conditional E-value: 6.1e-09
                 EEEEEEESSSS....EEEEEEETTSSEEE.EEETTSEEEEEE CS
        WD40   2 qclrtltGHss....vtslafspdgawla.sGsdDgtvriWd 38 
                 + lr+++GH++    vts+    dg+ ++ sGs D+tvr+Wd
  KOO24079.1  88 TELRVFEGHTDivyaVTSC--TVDGRVVVlSGSADKTVRMWD 127
                 6799*****7776666766..778888655***********9 PP

  == domain 4  score: 25.8 bits;  conditional E-value: 6.6e-09
                 TEEEEEEESS.SS...EEEEEEETTSSE.EEEEETTSEEEEEE CS
        WD40   1 gqclrtltGH.ss...vtslafspdgaw.lasGsdDgtvriWd 38 
                 g++lr+l+GH ++   vts+    +g+  ++sGs+D+tvr+Wd
  KOO24079.1 131 GRQLRVLEGHtDDvfaVTSC--TVEGRVvVLSGSEDRTVRMWD 171
                 5789******7667777888..556666445***********9 PP

  == domain 5  score: 28.7 bits;  conditional E-value: 7.8e-10
                 EEEEEEESS.SSEEEEE.EETTSSEEE.EEETTSEEEEEE CS
        WD40   2 qclrtltGH.ssvtsla.fspdgawla.sGsdDgtvriWd 38 
                 + lr+++GH + v+s+a  + dg+ ++ sGs D+tvr+Wd
  KOO24079.1 176 TELRVFEGHtDAVYSVAsCNVDGRVVVlSGSVDKTVRLWD 215
                 6799*****666****999999999766***********9 PP

  == domain 6  score: 28.1 bits;  conditional E-value: 1.3e-09
                 TEEEEEEESS.SS...EEEEEEETTSSEEE.EEETTSEEEEEE CS
        WD40   1 gqclrtltGH.ss...vtslafspdgawla.sGsdDgtvriWd 38 
                 g++lr+l+GH ++   vts+  s dg+ l+ s+sdD+tvr+Wd
  KOO24079.1 219 GRQLRVLEGHtDDvcaVTSC--SLDGRVLVlSASDDRTVRMWD 259
                 5789******7775555555..8899997559**********9 PP

  == domain 7  score: 22.5 bits;  conditional E-value: 7.3e-08
                 EEEEESS.SSEEEEE.EETTSSEEE.EEETTSEEEEEE CS
        WD40   4 lrtltGH.ssvtsla.fspdgawla.sGsdDgtvriWd 38 
                 l +l GH  +v+++a    dg+ l+ sGs+D+tvr+Wd
  KOO24079.1 280 LSVLWGHlRDVNAVAsCTVDGRTLVlSGSWDHTVRMWD 317
                 667779*9999999997778888655***********9 PP

>> Kelch_6  Kelch motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.4   0.1   0.00067       1.3       3      22 ..      13      32 ..      12      38 .. 0.86
   2 !    8.5   0.0    0.0012       2.5       6      32 ..      60      81 ..      57      88 .. 0.79
   3 !    8.0   0.0    0.0018       3.5       4      29 ..     102     125 ..     100     132 .. 0.80
   4 !    6.5   0.0    0.0055        11       5      30 ..     147     167 ..     144     176 .. 0.78
   5 !    7.6   0.0    0.0024       4.7       6      34 ..     190     215 ..     185     221 .. 0.72
   6 !    5.9   0.0    0.0085        17       3      42 ..     233     267 ..     232     273 .. 0.82
   7 ?    2.4   0.0      0.11   2.2e+02       6      22 ..     294     310 ..     289     319 .. 0.74

  Alignments for each domain:
  == domain 1  score: 9.4 bits;  conditional E-value: 0.00067
     Kelch_6  3 aghslvsvggkiYifGGytd 22
                +++s+++vgg++ +++G++d
  KOO24079.1 13 CAVSSCTVGGRVLVLSGSYD 32
                789**************998 PP

  == domain 2  score: 8.5 bits;  conditional E-value: 0.0012
     Kelch_6  6 slvsvggkiYifGGytdsspylnkvwv 32
                ++++v+g++++++G++d      kv  
  KOO24079.1 60 ASCTVDGRVVVLSGSVD-----QKVKM 81
                6899************9.....45444 PP

  == domain 3  score: 8.0 bits;  conditional E-value: 0.0018
     Kelch_6   4 ghslvsvggkiYifGGytdsspylnk 29 
                 ++++++v+g++++++G+ d  +++++
  KOO24079.1 102 AVTSCTVDGRVVVLSGSAD--KTVRM 125
                 5689*************98..44444 PP

  == domain 4  score: 6.5 bits;  conditional E-value: 0.0055
     Kelch_6   5 hslvsvggkiYifGGytdsspylnkv 30 
                 +++++v g++++++G+ d     + v
  KOO24079.1 147 VTSCTVEGRVVVLSGSED-----RTV 167
                 6789************99.....333 PP

  == domain 5  score: 7.6 bits;  conditional E-value: 0.0024
     Kelch_6   6 slvs..vggkiYifGGytdsspylnkvwvyd 34 
                 s++s  v+g++++++G++d     + v ++d
  KOO24079.1 190 SVAScnVDGRVVVLSGSVD-----KTVRLWD 215
                 55552378**********9.....6666666 PP

  == domain 6  score: 5.9 bits;  conditional E-value: 0.0085
     Kelch_6   3 aghslvsvggkiYifGGytdsspylnkvwvydpetksWeq 42 
                 ++++++s +g++ +++ ++d     + v  +d   +++e+
  KOO24079.1 233 CAVTSCSLDGRVLVLSASDD-----RTVRMWDATEGRCEE 267
                 67899**************9.....777777766666665 PP

  == domain 7  score: 2.4 bits;  conditional E-value: 0.11
     Kelch_6   6 slvsvggkiYifGGytd 22 
                 ++++v+g+  +++G+ d
  KOO24079.1 294 ASCTVDGRTLVLSGSWD 310
                 67889998888888866 PP

>> Kelch_2  Kelch motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.4   0.1    0.0023       4.5       3      22 ..      13      32 ..      11      47 .. 0.84
   2 ?    5.0   0.0     0.013        25       5      21 ..      59      84 ..      56      99 .. 0.72
   3 !    6.0   0.0    0.0062        12       3      22 ..     101     119 ..     100     143 .. 0.75
   4 ?    4.3   0.0     0.021        42       5      21 ..     147     172 ..     144     186 .. 0.72
   5 !    6.4   0.0    0.0046       9.1       3      36 ..     189     215 ..     187     231 .. 0.77
   6 ?    1.8   0.0      0.14   2.7e+02       4      20 ..     234     250 ..     232     264 .. 0.81
   7 ?    3.8   0.0     0.032        63       5      20 ..     293     308 ..     291     320 .. 0.84

  Alignments for each domain:
  == domain 1  score: 7.4 bits;  conditional E-value: 0.0023
     Kelch_2  3 gghsssvpggkiyvvGGaht 22
                + +ss+++gg+++v  G+++
  KOO24079.1 13 CAVSSCTVGGRVLVLSGSYD 32
                6789*************933 PP

  == domain 2  score: 5.0 bits;  conditional E-value: 0.013
     Kelch_2  5 hsssvpggkiyvvGGa.........h 21
                ++s++++g+++v  G+          
  KOO24079.1 59 VASCTVDGRVVVLSGSvdqkvkmwdA 84
                689************96666666654 PP

  == domain 3  score: 6.0 bits;  conditional E-value: 0.0062
     Kelch_2   3 gghsssvpggkiyvvGGaht 22 
                 + ++s++++g+++v  G+ +
  KOO24079.1 101 YAVTSCTVDGRVVVLSGS-A 119
                 6789*************9.2 PP

  == domain 4  score: 4.3 bits;  conditional E-value: 0.021
     Kelch_2   5 hsssvpggkiyvvGGa.........h 21 
                 ++s++++g+++v  G+          
  KOO24079.1 147 VTSCTVEGRVVVLSGSedrtvrmwdA 172
                 689*************5555555554 PP

  == domain 5  score: 6.4 bits;  conditional E-value: 0.0046
     Kelch_2   3 gghsssvpggkiyvvGGahtdnpnlsssdvhvld 36 
                 + ++s+ ++g+++v  G+       +  +v+ +d
  KOO24079.1 189 YSVASCNVDGRVVVLSGS-------VDKTVRLWD 215
                 7899**************.......444444444 PP

  == domain 6  score: 1.8 bits;  conditional E-value: 0.14
     Kelch_2   4 ghsssvpggkiyvvGGa 20 
                  ++s++++g+++v   +
  KOO24079.1 234 AVTSCSLDGRVLVLSAS 250
                 5789********98766 PP

  == domain 7  score: 3.8 bits;  conditional E-value: 0.032
     Kelch_2   5 hsssvpggkiyvvGGa 20 
                 ++s++++g+++v  G+
  KOO24079.1 293 VASCTVDGRTLVLSGS 308
                 689************9 PP

>> Nup160  Nucleoporin Nup120/160
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.4   0.0     0.012        24     223     253 ..      16      46 ..       9      52 .. 0.79
   2 !    6.2   0.1    0.0017       3.3     215     254 ..      53      91 ..      43      97 .. 0.80
   3 !    7.6   0.1   0.00064       1.3     219     255 ..     101     136 ..      94     144 .. 0.79
   4 !    5.5   0.1    0.0028       5.6     222     255 ..     147     180 ..     139     185 .. 0.81
   5 !    6.9   0.1     0.001         2     217     255 ..     187     224 ..     181     236 .. 0.81
   6 !    5.6   0.1    0.0027       5.3     223     252 ..     236     265 ..     227     268 .. 0.80
   7 !    9.0   0.3   0.00024      0.47     218     248 ..     289     319 ..     285     328 .. 0.84

  Alignments for each domain:
  == domain 1  score: 3.4 bits;  conditional E-value: 0.012
                 T......TTTEEEEEETT-EEEEEETTTTEEE CS
      Nup160 223 vavvei.gqtylfalsrdgkLrvWnlltgkcl 253
                 ++++ + g+ ++++ s d+++++W+ ++g+ l
  KOO24079.1  16 SSCT-VgGRVLVLSGSYDHTVKMWDAADGTEL 46 
                 4555.4489999999**********9887765 PP

  == domain 2  score: 6.2 bits;  conditional E-value: 0.0017
                 -ECEEEEET.....TTTEEEEEETT-EEEEEETTTTEEEE CS
      Nup160 215 valsldvavavveigqtylfalsrdgkLrvWnlltgkcla 254
                 ++++l va+  v+ g+ ++++ s+d+k+++W+ ++g+ l+
  KOO24079.1  53 TDAVLTVASCTVD-GRVVVLSGSVDQKVKMWDAADGTELR 91 
                 4566777776666.******************99987766 PP

  == domain 3  score: 7.6 bits;  conditional E-value: 0.00064
                 EEEET.....TTTEEEEEETT-EEEEEETTTTEEEEE CS
      Nup160 219 ldvavavveigqtylfalsrdgkLrvWnlltgkclat 255
                  +v++  v+ g+ ++++ s d+++r+W+ ++g++l++
  KOO24079.1 101 YAVTSCTVD-GRVVVLSGSADKTVRMWDAADGRQLRV 136
                 444444444.*********************999876 PP

  == domain 4  score: 5.5 bits;  conditional E-value: 0.0028
                 ET.....TTTEEEEEETT-EEEEEETTTTEEEEE CS
      Nup160 222 avavveigqtylfalsrdgkLrvWnlltgkclat 255
                 +++++ +g+ ++++ s d+++r+W+ ++g+ l++
  KOO24079.1 147 VTSCTVEGRVVVLSGSEDRTVRMWDATDGTELRV 180
                 4566655******************999887765 PP

  == domain 5  score: 6.9 bits;  conditional E-value: 0.001
                 CEEEEET.....TTTEEEEEETT-EEEEEETTTTEEEEE CS
      Nup160 217 lsldvavavveigqtylfalsrdgkLrvWnlltgkclat 255
                 ++ +va+  v+ g+ ++++ s+d+++r+W+ ++g++l++
  KOO24079.1 187 AVYSVASCNVD-GRVVVLSGSVDKTVRLWDAADGRQLRV 224
                 44555555555.999******************999886 PP

  == domain 6  score: 5.6 bits;  conditional E-value: 0.0027
                 T.....TTTEEEEEETT-EEEEEETTTTEE CS
      Nup160 223 vavveigqtylfalsrdgkLrvWnlltgkc 252
                 ++++  g+ +++++s d+++r+W+ + g+c
  KOO24079.1 236 TSCSLDGRVLVLSASDDRTVRMWDATEGRC 265
                 3444339999**************999888 PP

  == domain 7  score: 9.0 bits;  conditional E-value: 0.00024
                 EEEEET.....TTTEEEEEETT-EEEEEETT CS
      Nup160 218 sldvavavveigqtylfalsrdgkLrvWnll 248
                 +++++ +++  g+t++++ s d+++r+W++ 
  KOO24079.1 289 DVNAVASCTVDGRTLVLSGSWDHTVRMWDVG 319
                 57788888855******************95 PP

>> CryBP1  CryBP1 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.3   0.0      0.16   3.2e+02      52      92 ..      14      54 ..       5      58 .. 0.80
   2 ?    4.1   0.1     0.023        45      52      84 ..      58      90 ..      48     100 .. 0.78
   3 ?    3.7   0.1     0.031        61      49      83 ..      99     133 ..      93     144 .. 0.81
   4 ?   -0.0   0.0      0.41   8.2e+02      52      85 ..     146     179 ..     136     190 .. 0.77
   5 ?    6.1   0.7    0.0054        11      50      84 ..     188     222 ..     148     255 .. 0.76
   6 ?   -0.4   0.1      0.55   1.1e+03      52      81 ..     234     263 ..     223     306 .. 0.63
   7 ?   -0.1   0.0      0.45   8.9e+02      50      75 ..     290     315 ..     286     327 .. 0.82

  Alignments for each domain:
  == domain 1  score: 1.3 bits;  conditional E-value: 0.16
      CryBP1 52 nvgdievdvevlklvGaieyilnatpavrgdkvgrGefdie 92
                +v+++ v + vl l G+ ++++    a  g ++   e++++
  KOO24079.1 14 AVSSCTVGGRVLVLSGSYDHTVKMWDAADGTELRELEGHTD 54
                57899****************99999988888755566555 PP

  == domain 2  score: 4.1 bits;  conditional E-value: 0.023
      CryBP1 52 nvgdievdvevlklvGaieyilnatpavrgdkv 84
                 v+++ vd+ v+ l G+++  +    a  g ++
  KOO24079.1 58 TVASCTVDGRVVVLSGSVDQKVKMWDAADGTEL 90
                689***************998888877777665 PP

  == domain 3  score: 3.7 bits;  conditional E-value: 0.031
      CryBP1  49 iidnvgdievdvevlklvGaieyilnatpavrgdk 83 
                 i+ +v ++ vd+ v+ l G+ + ++    a  g +
  KOO24079.1  99 IVYAVTSCTVDGRVVVLSGSADKTVRMWDAADGRQ 133
                 567899**************999988877776655 PP

  == domain 4  score: -0.0 bits;  conditional E-value: 0.41
      CryBP1  52 nvgdievdvevlklvGaieyilnatpavrgdkvg 85 
                 +v ++ v++ v+ l G+ + ++    a  g ++ 
  KOO24079.1 146 AVTSCTVEGRVVVLSGSEDRTVRMWDATDGTELR 179
                 6889************999888888877777664 PP

  == domain 5  score: 6.1 bits;  conditional E-value: 0.0054
      CryBP1  50 idnvgdievdvevlklvGaieyilnatpavrgdkv 84 
                 + +v++++vd+ v+ l G+++ ++    a  g ++
  KOO24079.1 188 VYSVASCNVDGRVVVLSGSVDKTVRLWDAADGRQL 222
                 55789****************99988877766655 PP

  == domain 6  score: -0.4 bits;  conditional E-value: 0.55
      CryBP1  52 nvgdievdvevlklvGaieyilnatpavrg 81 
                 +v ++++d+ vl l  + + ++    a  g
  KOO24079.1 234 AVTSCSLDGRVLVLSASDDRTVRMWDATEG 263
                 567888888888877766666665555544 PP

  == domain 7  score: -0.1 bits;  conditional E-value: 0.45
      CryBP1  50 idnvgdievdvevlklvGaieyilna 75 
                 +++v+++ vd+  l l G+ ++++  
  KOO24079.1 290 VNAVASCTVDGRTLVLSGSWDHTVRM 315
                 67899***********9999887765 PP

>> Ribosomal_L21e  Ribosomal protein L21e
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.6   0.0    0.0071        14      50      72 ..      86     108 ..      74     128 .. 0.81
   2 ?   -0.4   0.0      0.52     1e+03      50      72 ..     130     152 ..     122     169 .. 0.80
   3 ?    3.4   0.0     0.035        70      49      69 ..     173     193 ..     165     212 .. 0.82
   4 ?   -1.9   0.0       1.5   3.1e+03      50      69 ..     218     237 ..     216     242 .. 0.84

  Alignments for each domain:
  == domain 1  score: 5.6 bits;  conditional E-value: 0.0071
                     SS---GGGTT-EEEE..EEEETT CS
  Ribosomal_L21e  50 kgmphkryhGktgrvynvtkrav 72 
                     +g+  ++++G+t  vy+vt   v
      KOO24079.1  86 DGTELRVFEGHTDIVYAVTSCTV 108
                     79999*************98766 PP

  == domain 2  score: -0.4 bits;  conditional E-value: 0.52
                     SS---GGGTT-EEEE..EEEETT CS
  Ribosomal_L21e  50 kgmphkryhGktgrvynvtkrav 72 
                     +g+  ++ +G+t  v++vt   v
      KOO24079.1 130 DGRQLRVLEGHTDDVFAVTSCTV 152
                     688889999*******9998665 PP

  == domain 3  score: 3.4 bits;  conditional E-value: 0.035
                     -SS---GGGTT-EEEE..EEE CS
  Ribosomal_L21e  49 qkgmphkryhGktgrvynvtk 69 
                      +g+  ++++G+t  vy+v  
      KOO24079.1 173 TDGTELRVFEGHTDAVYSVAS 193
                     579999***********9975 PP

  == domain 4  score: -1.9 bits;  conditional E-value: 1.5
                     SS---GGGTT-EEEE..EEE CS
  Ribosomal_L21e  50 kgmphkryhGktgrvynvtk 69 
                     +g+  ++ +G+t  v++vt 
      KOO24079.1 218 DGRQLRVLEGHTDDVCAVTS 237
                     578889999******99986 PP

>> BON  BON domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.9   0.1    0.0079        16      28      42 ..      64      78 ..      61      89 .. 0.72
   2 ?    4.5   0.1     0.022        44      28      42 ..     108     122 ..     102     130 .. 0.73
   3 ?    0.3   0.3      0.45   8.9e+02      27      38 ..     151     162 ..     147     167 .. 0.82
   4 ?    5.2   0.1     0.014        27      30      42 ..     197     210 ..     194     218 .. 0.74

  Alignments for each domain:
  == domain 1  score: 5.9 bits;  conditional E-value: 0.0079
                EETTC.EEEECEEECH CS
         BON 28 venGv.VtLsGtVdse 42
                v +G+ V+LsG Vd  
  KOO24079.1 64 V-DGRvVVLSGSVDQK 78
                4.5555*******855 PP

  == domain 2  score: 4.5 bits;  conditional E-value: 0.022
                 EETTC.EEEECEEECH CS
         BON  28 venGv.VtLsGtVdse 42 
                 v +G+ V+LsG +d+ 
  KOO24079.1 108 V-DGRvVVLSGSADKT 122
                 4.5555******9965 PP

  == domain 3  score: 0.3 bits;  conditional E-value: 0.45
                 EEETTCEEEECE CS
         BON  27 evenGvVtLsGt 38 
                 +ve  vV+LsG 
  KOO24079.1 151 TVEGRVVVLSGS 162
                 577767****95 PP

  == domain 4  score: 5.2 bits;  conditional E-value: 0.014
                 TTC.EEEECEEECH CS
         BON  30 nGv.VtLsGtVdse 42 
                 +G+ V+LsG Vd+ 
  KOO24079.1 197 DGRvVVLSGSVDKT 210
                 4555*******964 PP

>> DUF5070  Domain of unknown function (DUF5070)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.9   0.1     0.025        49     107     146 ..      11      47 ..       6      55 .. 0.76
   2 ?    3.7   0.0     0.028        56     110     151 ..      55      96 ..      49     100 .. 0.86
   3 ?   -2.7   0.0       2.6   5.1e+03     116     143 ..     105     132 ..      97     141 .. 0.73
   4 ?   -0.4   0.0      0.52     1e+03     112     151 ..     145     184 ..     122     188 .. 0.82
   5 ?   -1.0   0.0       0.8   1.6e+03     108     143 ..     185     220 ..     165     229 .. 0.75
   6 ?   -2.3   0.0         2     4e+03     116     142 ..     295     321 ..     289     327 .. 0.79

  Alignments for each domain:
  == domain 1  score: 3.9 bits;  conditional E-value: 0.025
     DUF5070 107 cdcsvllclsgekagwglffsgeypqdvfnwgagdtaiil 146
                   c+v  c  g   g  l++sg y + v  w a+d + + 
  KOO24079.1  11 GVCAVSSCTVG---GRVLVLSGSYDHTVKMWDAADGTELR 47 
                 45666666655...6789***************9987655 PP

  == domain 2  score: 3.7 bits;  conditional E-value: 0.028
     DUF5070 110 svllclsgekagwglffsgeypqdvfnwgagdtaiilrfssa 151
                 +vl + s    g  +++sg   q v  w a+d + +  f ++
  KOO24079.1  55 AVLTVASCTVDGRVVVLSGSVDQKVKMWDAADGTELRVFEGH 96 
                 57777888889999******************9988888877 PP

  == domain 3  score: -2.7 bits;  conditional E-value: 2.6
     DUF5070 116 sgekagwglffsgeypqdvfnwgagdta 143
                 s    g  +++sg   + v  w a+d  
  KOO24079.1 105 SCTVDGRVVVLSGSADKTVRMWDAADGR 132
                 5555677788899999999999998865 PP

  == domain 4  score: -0.4 bits;  conditional E-value: 0.52
     DUF5070 112 llclsgekagwglffsgeypqdvfnwgagdtaiilrfssa 151
                 + + s    g  +++sg   + v  w a d + +  f ++
  KOO24079.1 145 FAVTSCTVEGRVVVLSGSEDRTVRMWDATDGTELRVFEGH 184
                 455566677888999999999999***9999888888776 PP

  == domain 5  score: -1.0 bits;  conditional E-value: 0.8
     DUF5070 108 dcsvllclsgekagwglffsgeypqdvfnwgagdta 143
                   +v  + s +  g  +++sg   + v  w a+d  
  KOO24079.1 185 TDAVYSVASCNVDGRVVVLSGSVDKTVRLWDAADGR 220
                 445666777888899999999999999999999865 PP

  == domain 6  score: -2.3 bits;  conditional E-value: 2
     DUF5070 116 sgekagwglffsgeypqdvfnwgagdt 142
                 s    g  l++sg + + v  w +g +
  KOO24079.1 295 SCTVDGRTLVLSGSWDHTVRMWDVGRA 321
                 555678899999999999999998865 PP

>> DUF2180  Uncharacterized protein conserved in archaea (DUF2180)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.5   0.1      0.15     3e+02      15      44 ..      14      43 ..       6      58 .. 0.78
   2 ?    3.9   0.1     0.026        51      15      42 ..      58      85 ..      47     100 .. 0.83
   3 ?   -0.1   0.0      0.48   9.6e+02      15      41 ..     102     128 ..      93     135 .. 0.86
   4 ?    0.5   0.0      0.31   6.2e+02      12      41 ..     143     172 ..     135     185 .. 0.77
   5 ?    0.2   0.1      0.37   7.4e+02      15      41 ..     190     216 ..     180     238 .. 0.82
   6 ?    4.6   0.0     0.015        31      11      42 ..     288     319 ..     285     328 .. 0.86

  Alignments for each domain:
  == domain 1  score: 1.5 bits;  conditional E-value: 0.15
     DUF2180 15 avaiCivCGkGvCkdHlvreeievweGgyp 44
                av+ C v G+ +    +  + +++w+ +  
  KOO24079.1 14 AVSSCTVGGRVLVLSGSYDHTVKMWDAADG 43
                788899999999999999999999987655 PP

  == domain 2  score: 3.9 bits;  conditional E-value: 0.026
     DUF2180 15 avaiCivCGkGvCkdHlvreeievweGg 42
                 va C v G+ v    +v +++++w+ +
  KOO24079.1 58 TVASCTVDGRVVVLSGSVDQKVKMWDAA 85
                4799*********************965 PP

  == domain 3  score: -0.1 bits;  conditional E-value: 0.48
     DUF2180  15 avaiCivCGkGvCkdHlvreeievweG 41 
                 av+ C v G+ v    +  + + +w+ 
  KOO24079.1 102 AVTSCTVDGRVVVLSGSADKTVRMWDA 128
                 7899******99999999999999975 PP

  == domain 4  score: 0.5 bits;  conditional E-value: 0.31
     DUF2180  12 dtdavaiCivCGkGvCkdHlvreeievweG 41 
                 d  av+ C v G+ v    +  + + +w+ 
  KOO24079.1 143 DVFAVTSCTVEGRVVVLSGSEDRTVRMWDA 172
                 3446778******99999888888888875 PP

  == domain 5  score: 0.2 bits;  conditional E-value: 0.37
     DUF2180  15 avaiCivCGkGvCkdHlvreeievweG 41 
                  va C v G+ v    +v + + +w+ 
  KOO24079.1 190 SVASCNVDGRVVVLSGSVDKTVRLWDA 216
                 47999999*999999999999999986 PP

  == domain 6  score: 4.6 bits;  conditional E-value: 0.015
     DUF2180  11 kdtdavaiCivCGkGvCkdHlvreeievweGg 42 
                 +d +ava C v G+ +    +  + + +w+ g
  KOO24079.1 288 RDVNAVASCTVDGRTLVLSGSWDHTVRMWDVG 319
                 6899************9999999999999755 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (334 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       412  (0.0229795); expected 358.6 (0.02)
Passed bias filter:                      276  (0.0153941); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.52u 0.28s 00:00:00.80 Elapsed: 00:00:00.42
# Mc/sec: 2366.62
//
Query:       KOO24080.1  [L=341]
Description: hypothetical protein Ctob_003272 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
  ------ inclusion threshold ------
      0.053   14.1   3.8       0.13   12.8   3.8    1.7  1  Syntaxin-6_N    Syntaxin 6, N-terminal
       0.12   13.2   4.3       0.21   12.5   4.3    1.3  1  PRKG1_interact  cGMP-dependent protein kinase interacting dom


Domain annotation for each model (and alignments):
>> Syntaxin-6_N  Syntaxin 6, N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   3.8   1.5e-05      0.13       7      95 ..      73     161 ..      70     170 .. 0.57

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 1.5e-05
  Syntaxin-6_N   7 keeVqkslnkaeslyrrwerlledtsss.......tseeldetrteLrkalrsiewdledLeetvriveknpskfkidekelsrrrafveevreev 95 
                   +  V++++ +a++ +r+w r l++ +++        +++l++  t  +k+l++++ + + L ++ ++ve        ++k ++ +r +++ +r+ +
    KOO24080.1  73 RGAVREEVLRARTALRSWLRNLDSDDEElqkelptMESNLSSSITARQKQLETADAQRRTLGHSLAVVEM-------QQKIIDAQRTIITTMRKSL 161
                   567999999999999***7666666665223444445555555555555555555555555555555555.......4555555555554444433 PP

>> PRKG1_interact  cGMP-dependent protein kinase interacting domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   4.3   2.3e-05      0.21       7      86 ..      78     157 ..      75     168 .. 0.90

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 2.3e-05
  PRKG1_interact   7 eeekeenerLkreLeelekelselkseleklkqqrqesvskrssllelekrerrslerkiseleeelkeleeLraenqrL 86 
                     ee ++ +  L++ L++l+ + +el++el +++++ ++s+++r++ le+ + +rr+l ++++ +e ++k +++ r+    +
      KOO24080.1  78 EEVLRARTALRSWLRNLDSDDEELQKELPTMESNLSSSITARQKQLETADAQRRTLGHSLAVVEMQQKIIDAQRTIITTM 157
                     566778899***********************99999************************9999999998887766655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (341 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       780  (0.0435049); expected 358.6 (0.02)
Passed bias filter:                      545  (0.0303977); expected 358.6 (0.02)
Passed Vit filter:                        73  (0.00407162); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.51u 0.26s 00:00:00.77 Elapsed: 00:00:00.42
# Mc/sec: 2447.99
//
Query:       KOO24081.1  [L=281]
Description: hypothetical protein Ctob_003273 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      0.002   19.2   4.3      0.002   19.2   4.3    3.1  3  SOGA             Protein SOGA
  ------ inclusion threshold ------
       0.11   12.0   0.1       0.18   11.4   0.1    1.4  1  DUF1281          Protein of unknown function (DUF1281)
        4.5    6.7   9.5       0.41   10.1   2.7    2.1  2  Allexi_40kDa     Allexivirus 40kDa protein


Domain annotation for each model (and alignments):
>> SOGA  Protein SOGA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.4   8.9      0.06   3.6e+02      24      79 ..      53     117 ..      38     128 .. 0.78
   2 ?   -1.3   0.1      0.83     5e+03      72      90 ..     138     156 ..     120     161 .. 0.64
   3 !   19.2   4.3   3.3e-07     0.002      22      84 ..     165     225 ..     159     238 .. 0.88

  Alignments for each domain:
  == domain 1  score: 2.4 bits;  conditional E-value: 0.06
        SOGA  24 seleeenkqlteeLnkyksklgeee.ssleeee........eassdsskeaelkeeLklarlqin 79 
                  e e e+++l+ eL+  + +  e e +++++++        +++++s+++a+l + Lk a++ + 
  KOO24081.1  53 RESETEREKLKAELKAIRKEQAEAEkRWASATDafeeqlaeSEQRESERHAALTVALKEAQQAAA 117
                 46689999*******99887766550555555589998887777888889999999999988766 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 0.83
        SOGA  72 klarlqineLsgkvvkLqv 90 
                   a+ +   Ls  v  Lq 
  KOO24081.1 138 SNAEDECARLSAAVEALQQ 156
                 4566677777777777765 PP

  == domain 3  score: 19.2 bits;  conditional E-value: 3.3e-07
        SOGA  22 slseleeenkqlteeLnkyksklgeeessleeeeeassdsskeaelkeeLklarlqineLsgk 84 
                  +++ e+e+  l++ L+ ++ +l ++ +++++  ea++++++e++l eeL++ar+q+neL+ k
  KOO24081.1 165 AVADKERERAALETALKELRAELATVAAAAKD--EAEAAAARERTLSEELETARQQANELEAK 225
                 567789999******************99988..66667789******************988 PP

>> DUF1281  Protein of unknown function (DUF1281)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.1     3e-05      0.18      22     101 ..      14      94 ..       1     129 [. 0.82

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 3e-05
     DUF1281  22 iLkPvktlsyapypaLvsaGtgesspenlA.FeqWlelLkedveLteeaieeierlyeqsglaavkWeslteakrealaal 101
                 i+    ++++   p L+s G +++  + +A Fe  +elL+e  +  e+   e++++ +++  a+++W s t a  e+la+ 
  KOO24081.1  14 IVATKTAEVFFLTPHLMSFGASSKDKQLQAnFEAVVELLRESETEREKLKAELKAIRKEQAEAEKRWASATDAFEEQLAES 94 
                 555566789999*******988877776666***********99999999********************99988888765 PP

>> Allexi_40kDa  Allexivirus 40kDa protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.4   0.7     0.062   3.7e+02      81     129 ..      53      93 ..      27     130 .. 0.44
   2 ?   10.1   2.7   6.8e-05      0.41      73     153 ..     130     206 ..     126     232 .. 0.74

  Alignments for each domain:
  == domain 1  score: 0.4 bits;  conditional E-value: 0.062
  Allexi_40kDa  81 selrdalrtltklldklksvekklelsaetasdskllkklesietslee 129
                    e  ++ ++l+ +l+ +++ + + e++  +a+        ++ e++l e
    KOO24081.1  53 RESETEREKLKAELKAIRKEQAEAEKRWASAT--------DAFEEQLAE 93 
                   22222333333333333333332222222222........222222222 PP

  == domain 2  score: 10.1 bits;  conditional E-value: 6.8e-05
  Allexi_40kDa  73 llsqttlLselrdalrtltklldklksvekklelsaetasdskllkklesietsleelhakldelsssetsesegPssspt 153
                   l+++++  s+  d+  +l+  ++ l++++++  + a  +++++     +++et l+el a+l ++++++++e e   + + 
    KOO24081.1 130 LVAEAARASNAEDECARLSAAVEALQQQQQSAMAAAVADKERE----RAALETALKELRAELATVAAAAKDEAEAAAARER 206
                   67888899999**************999888887777766666....569************9999888877765443332 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (281 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      3014  (0.168108); expected 358.6 (0.02)
Passed bias filter:                      611  (0.0340789); expected 358.6 (0.02)
Passed Vit filter:                       155  (0.00864521); expected 17.9 (0.001)
Passed Fwd filter:                        66  (0.00368119); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 1.31u 0.33s 00:00:01.64 Elapsed: 00:00:00.53
# Mc/sec: 1592.58
//
Query:       KOO24082.1  [L=208]
Description: hypothetical protein Ctob_003274 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (208 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       518  (0.0288917); expected 358.6 (0.02)
Passed bias filter:                      348  (0.0194099); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.40u 0.26s 00:00:00.66 Elapsed: 00:00:00.41
# Mc/sec: 1521.92
//
Query:       KOO24083.1  [L=109]
Description: hypothetical protein Ctob_003275 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
  ------ inclusion threshold ------
        0.1   12.6   0.0       0.14   12.1   0.0    1.2  1  Turandot     Stress-inducible humoral factor Turandot
       0.18   11.6   0.0       0.24   11.2   0.0    1.2  1  Aminotran_4  Amino-transferase class IV


Domain annotation for each model (and alignments):
>> Turandot  Stress-inducible humoral factor Turandot
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   1.6e-05      0.14      28      58 ..      63      93 ..      50     101 .. 0.73

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 1.6e-05
    Turandot 28 spderekldrlireykeeevlvDGvPaqGGv 58
                 ++ + +  + i++y e+ +++DG P  G +
  KOO24083.1 63 YDETKFRQQDAIEKYGEDVIMIDGRPKYGRR 93
                34445566789***************98855 PP

>> Aminotran_4  Amino-transferase class IV
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   2.7e-05      0.24      89     142 ..      33      85 ..       5      88 .. 0.76

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 2.7e-05
  Aminotran_4  89 gpesekelplvtssdvrrdapsplpgaKtlnyldnvlarreakergadevllvd 142
                  ++ + ++ ++++s+  ++d + + +++ t++y++    ++ a e+  ++v+++d
   KOO24083.1  33 AQRDRDRGHWIHSR-FSADYRHTPTDIHTTSYDETKFRQQDAIEKYGEDVIMID 85 
                  33333334677777.9999999999***************************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (109 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       302  (0.0168442); expected 358.6 (0.02)
Passed bias filter:                      259  (0.0144459); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.37u 0.23s 00:00:00.60 Elapsed: 00:00:00.39
# Mc/sec: 829.69
//
Query:       KOO24084.1  [L=205]
Description: protein tyrosine dual [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    0.00039   20.2   0.0    0.00053   19.8   0.0    1.2  1  DSPc            Dual specificity phosphatase, catalytic domai
  ------ inclusion threshold ------
      0.036   14.0   0.0       0.04   13.9   0.0    1.1  1  Y_phosphatase3  Tyrosine phosphatase family
       0.06   12.9   0.0      0.078   12.5   0.0    1.1  1  Y_phosphatase   Protein-tyrosine phosphatase


Domain annotation for each model (and alignments):
>> DSPc  Dual specificity phosphatase, catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.8   0.0   8.8e-08   0.00053      77     107 ..     107     137 ..      64     145 .. 0.85

  Alignments for each domain:
  == domain 1  score: 19.8 bits;  conditional E-value: 8.8e-08
                 EEEESSSSSHHHHHHHHHHHHHHTSCHHHHH CS
        DSPc  77 lVHCqaGisRSatliiaYlmktknlslneay 107
                 + HC+aG  R++ +  aY m++ ++++  a+
  KOO24084.1 107 YAHCNAGCDRTGEFFGAYAMSYLGYNVTTAM 137
                 46*************************9997 PP

>> Y_phosphatase3  Tyrosine phosphatase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.0   6.7e-06      0.04     109     148 ..      88     132 ..      43     139 .. 0.74

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 6.7e-06
  Y_phosphatase3 109 ayrkvfealad.ee...pvlfHCtaGKDRTG.vlaalllsllGvd 148
                     ++++v   l + ++    +  HC aG DRTG ++ a  +s lG +
      KOO24084.1  88 RLAAVHASLTNtSGpptIFYAHCNAGCDRTGeFFGAYAMSYLGYN 132
                     455566666664336334466**********55567777777765 PP

>> Y_phosphatase  Protein-tyrosine phosphatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   1.3e-05     0.078     160     193 ..      90     126 ..      72     144 .. 0.68

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 1.3e-05
                    HHHHHHHSTTSS-EEE...ECSSSSHHHHHHHHHHHH CS
  Y_phosphatase 160 rkvekskeaksgpvvV...hCsaGvgRtgtfvaldil 193
                    + v+ s +++sgp ++   hC aG+ Rtg f+ + ++
     KOO24084.1  90 AAVHASLTNTSGPPTIfyaHCNAGCDRTGEFFGAYAM 126
                    4444444444555443344************987554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (205 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       486  (0.0271069); expected 358.6 (0.02)
Passed bias filter:                      308  (0.0171789); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.39u 0.24s 00:00:00.63 Elapsed: 00:00:00.39
# Mc/sec: 1572.47
//
Query:       KOO24085.1  [L=421]
Description: hypothetical protein Ctob_003277 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.2e-15   55.6   0.8     0.0032   18.3   0.0    5.2  4  WD40      WD domain, G-beta repeat
    5.3e-09   35.9   0.0    1.1e-08   34.9   0.0    1.5  1  PUB       PUB domain
    2.6e-05   24.0   0.4    6.1e-05   22.8   0.1    1.8  2  UBA       UBA/TS-N domain
    8.2e-05   22.8   0.0    0.00014   22.1   0.0    1.2  1  PFU       PFU (PLAA family ubiquitin binding)


Domain annotation for each model (and alignments):
>> WD40  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.1   0.0    0.0024        11      25      38 .]     136     149 ..     119     149 .. 0.81
   2 !   18.3   0.0   7.2e-07    0.0032       2      38 .]     159     200 ..     158     200 .. 0.90
   3 !   12.2   0.2   5.9e-05      0.27       5      36 ..     217     261 ..     214     270 .. 0.78
   4 !   11.4   0.0   0.00011      0.49      25      37 ..     314     326 ..     292     327 .. 0.82

  Alignments for each domain:
  == domain 1  score: 7.1 bits;  conditional E-value: 0.0024
                 EEEEETTSEEEEEE CS
        WD40  25 lasGsdDgtvriWd 38 
                 +++G++D+ v++W+
  KOO24085.1 136 VLTGGMDNLVKVWS 149
                 568*99*******5 PP

  == domain 2  score: 18.3 bits;  conditional E-value: 7.2e-07
                 EEEEEEESS.SS.....EEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40   2 qclrtltGH.ss.....vtslafspdgawlasGsdDgtvriWd 38 
                 ++lr++ +H +      v +l+  p ga  as+++Dg+v +Wd
  KOO24085.1 159 EPLRVFVAHeNArgaagVLALCSLPGGAV-ASAGRDGKVVVWD 200
                 6899*****8778999*************.56777*******9 PP

  == domain 3  score: 12.2 bits;  conditional E-value: 5.9e-05
                 EEEESS.SS..........EEEEE...EETTSSEEEEEETTSEEEE CS
        WD40   5 rtltGH.ss..........vtsla...fspdgawlasGsdDgtvri 36 
                  +l +H  +          vt+la    +  ga+ +sG++D+tvr+
  KOO24085.1 217 AILITHgEPpgkevsnkqvVTCLAgegGDAGGAL-CSGGWDQTVRV 261
                 56666643356667777878****9999999999.69***999997 PP

  == domain 4  score: 11.4 bits;  conditional E-value: 0.00011
                 EEEEETTSEEEEE CS
        WD40  25 lasGsdDgtvriW 37 
                 la G+dDg vriW
  KOO24085.1 314 LAVGGDDGCVRIW 326
                 789********** PP

>> PUB  PUB domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.9   0.0   2.4e-12   1.1e-08       6      61 ..      25      79 ..      20     103 .. 0.84

  Alignments for each domain:
  == domain 1  score: 34.9 bits;  conditional E-value: 2.4e-12
         PUB  6 ealktLrkylnNilehpteekyrrIrleNkafkekvlplegavelLealGFeekne 61
                e  ++L ++l+N+ ++   +k+rr++l+N+++k+ vl   ga+e+L a+GF   ++
  KOO24085.1 25 ESGRVLSTLLSNLARED-TPKFRRVNLTNAKIKAAVLGAAGAREVLIAAGFSAVED 79
                55579********9986.59*******************************87655 PP

>> UBA  UBA/TS-N domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.0       1.7   7.6e+03      21      28 ..     103     110 ..     103     110 .. 0.88
   2 !   22.8   0.1   1.4e-08   6.1e-05       6      34 ..     388     416 ..     385     419 .. 0.94

  Alignments for each domain:
  == domain 1  score: -3.0 bits;  conditional E-value: 1.7
                 HHHHHTTT CS
         UBA  21 eALratgn 28 
                 eAL+a+g+
  KOO24085.1 103 EALVAAGG 110
                 7****997 PP

  == domain 2  score: 22.8 bits;  conditional E-value: 1.4e-08
                 HHHHHHTTS-HHHHHHHHHHTTTSHHHHH CS
         UBA   6 iqrLveMGFdreevveALratgnNeErAv 34 
                  q+Lv MGFd ++ + AL  +g+++E A+
  KOO24085.1 388 AQQLVTMGFDAQRSLAALQKAGGDVEVAL 416
                 69************************995 PP

>> PFU  PFU (PLAA family ubiquitin binding)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.1   0.0     3e-08   0.00014      48      87 ..     353     390 ..     338     400 .. 0.84

  Alignments for each domain:
  == domain 1  score: 22.1 bits;  conditional E-value: 3e-08
         PFU  48 keyeGkeYDyvfdvdiedgkpplkLpynksdnpyeaAekF 87 
                  + +Gk+YD+vf v++  gk   ++++n++d++ ++A + 
  KOO24085.1 353 MAADGKQYDFVFPVEMGGGKA--QIFWNVGDDIRTVAAQQ 390
                 4668************98876..6*********9999765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (421 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       469  (0.0261587); expected 358.6 (0.02)
Passed bias filter:                      327  (0.0182386); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.47u 0.22s 00:00:00.69 Elapsed: 00:00:00.38
# Mc/sec: 3305.82
//
Query:       KOO24086.1  [L=261]
Description: g2-like myb-family transcription factor [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    0.00023   20.8  14.4    0.00023   20.8  14.4    2.7  3  Myb_CC_LHEQLE    MYB-CC type transfactor, LHEQLE motif
     0.0009   19.4   0.0     0.0018   18.4   0.0    1.6  1  Myb_DNA-binding  Myb-like DNA-binding domain
  ------ inclusion threshold ------
       0.19   12.0   1.4       0.31   11.4   0.0    2.1  3  DUF1269          Protein of unknown function (DUF1269)
        1.4    9.4  12.7        2.7    8.5   0.2    3.2  3  IATP             Mitochondrial ATPase inhibitor, IATP


Domain annotation for each model (and alignments):
>> Myb_CC_LHEQLE  MYB-CC type transfactor, LHEQLE motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   2.2      0.26   1.1e+03      12      24 ..     154     166 ..     151     169 .. 0.83
   2 !   20.8  14.4     5e-08   0.00023       7      32 ..     170     195 ..     167     197 .. 0.96
   3 ?   -3.5   1.4         2   8.8e+03      16      27 ..     225     236 ..     222     241 .. 0.60

  Alignments for each domain:
  == domain 1  score: -0.6 bits;  conditional E-value: 0.26
  Myb_CC_LHEQLE  12 evQkrLhEQLEvQ 24 
                    +v+k L+ +LE Q
     KOO24086.1 154 DVHKELEQHLEKQ 166
                    7999999999976 PP

  == domain 2  score: 20.8 bits;  conditional E-value: 5e-08
  Myb_CC_LHEQLE   7 LrlQmevQkrLhEQLEvQrhLqlRiE 32 
                    Lr+Qme+Q +Lh QL vQr+Lq ++E
     KOO24086.1 170 LRMQMELQTKLHRQLLVQRQLQHQLE 195
                    9**********************999 PP

  == domain 3  score: -3.5 bits;  conditional E-value: 2
  Myb_CC_LHEQLE  16 rLhEQLEvQrhL 27 
                    rL  ++ vQ+++
     KOO24086.1 225 RLTKHVMVQQEM 236
                    566666666654 PP

>> Myb_DNA-binding  Myb-like DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.4   0.0   4.1e-07    0.0018       4      46 .]      65     115 ..      62     115 .. 0.89

  Alignments for each domain:
  == domain 1  score: 18.4 bits;  conditional E-value: 4.1e-07
                      SBHHHHHHHHHHHHHHT.TC..HHHHHHHHT..S...S-HHHHHHHHHHHT CS
  Myb_DNA-binding   4 WteeEdelLleavkkhG.nr..WkkIaerlg..g...Rtekqcrsrwrnyl 46 
                      Wt e + +++ av+ +G ++  + +I++ +   g    t+ +++s++++y+
       KOO24086.1  65 WTGELHRRFEAAVNTLGiDQakPQTISQLMKceGegaPTRQNIKSHLQKYR 115
                      *****************95566********98745679***********96 PP

>> DUF1269  Protein of unknown function (DUF1269)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.1       2.6   1.2e+04      23      36 ..      36      49 ..      30      53 .. 0.73
   2 ?   11.4   0.0   6.9e-05      0.31      19      64 ..     130     175 ..     125     196 .. 0.85
   3 ?   -2.9   0.0         2   8.8e+03      37      54 ..     229     246 ..     218     252 .. 0.63

  Alignments for each domain:
  == domain 1  score: -3.3 bits;  conditional E-value: 2.6
     DUF1269 23 avGAaaGAlvgals 36
                + GA+ G++ g ++
  KOO24086.1 36 LDGAGGGGMDGMAE 49
                56899999888766 PP

  == domain 2  score: 11.4 bits;  conditional E-value: 6.9e-05
     DUF1269  19 llGaavGAaaGAlvgalsdvgidddflkelgeklkpgtsalfllve 64 
                 ++G   GA+ GA  +a s  ++d d+ kel+++l++ +  l + +e
  KOO24086.1 130 VAGGSSGASEGATGSAGSVPAVDADVHKELEQHLEKQEMNLRMQME 175
                 567889*****************************99988876665 PP

  == domain 3  score: -2.9 bits;  conditional E-value: 2
     DUF1269  37 dvgidddflkelgeklkp 54 
                 +v +++++l++l + +++
  KOO24086.1 229 HVMVQQEMLQHLDKLVSN 246
                 455666666666655554 PP

>> IATP  Mitochondrial ATPase inhibitor, IATP
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.5   0.2    0.0006       2.7      29      94 ..      48     112 ..      42     116 .. 0.88
   2 ?    6.1   1.6    0.0034        15      24      91 ..     126     196 ..     113     198 .. 0.72
   3 ?    1.7   0.4     0.079   3.5e+02      73      96 ..     216     243 ..     202     254 .. 0.67

  Alignments for each domain:
  == domain 1  score: 8.5 bits;  conditional E-value: 0.0006
        IATP  29 gEgdsGapkgtGggGsireagdafgkrEaAsEeeyirqrekekLaeLkeklaeqkeHleeleeHie 94 
                 +E +s ++kg+G +     +g+ + + EaA     i q + + + +L +   e +  +++++ H +
  KOO24086.1  48 AE-ESSTGKGGGHKARFVWTGELHRRFEAAVNTLGIDQAKPQTISQLMKCEGEGAPTRQNIKSHLQ 112
                 53.56789999999999******************************9988888999999999976 PP

  == domain 2  score: 6.1 bits;  conditional E-value: 0.0034
        IATP  24 aarrmgEgdsGapkg.tGggGsi.reagdafgkrEaAsEeeyirqr.ekekLaeLkeklaeqkeHleelee 91 
                 + + ++ g sGa +g tG+ Gs+ +  +d ++  E+  E++ +  r ++e  ++L+++l  q++ + +le+
  KOO24086.1 126 DPADVAGGSSGASEGaTGSAGSVpAVDADVHKELEQHLEKQEMNLRmQMELQTKLHRQLLVQRQLQHQLEH 196
                 55567778999988648999999666789999999999998887551455556788888887776666664 PP

  == domain 3  score: 1.7 bits;  conditional E-value: 0.079
        IATP  73 aeLkeklaeq.keH...leeleeHieai 96 
                  +Lk++l+e+  +H   ++e+ +H +++
  KOO24086.1 216 VSLKNSLRERlTKHvmvQQEMLQHLDKL 243
                 4566666666666633367777777765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (261 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1425  (0.0794802); expected 358.6 (0.02)
Passed bias filter:                      549  (0.0306208); expected 358.6 (0.02)
Passed Vit filter:                        47  (0.00262145); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.43u 0.24s 00:00:00.67 Elapsed: 00:00:00.36
# Mc/sec: 2166.82
//
Query:       KOO24087.1  [L=400]
Description: peptide-aspartate beta-dioxygenase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    9.2e-48  162.0   0.0    1.4e-47  161.5   0.0    1.3  1  Asp_Arg_Hydrox  Aspartyl/Asparaginyl beta-hydroxylase
  ------ inclusion threshold ------
      0.091   12.2   0.0       0.17   11.2   0.0    1.4  1  Coatomer_E      Coatomer epsilon subunit
       0.13   12.1   2.5       0.82    9.6   0.2    3.0  3  TPR_1           Tetratricopeptide repeat
       0.24   11.5   1.7        1.7    8.8   0.5    2.7  2  TPR_7           Tetratricopeptide repeat
       0.33   11.6  20.2       0.12   13.0   6.0    3.2  3  TPR_16          Tetratricopeptide repeat
       0.58    9.9   5.8          1    9.1   0.1    3.3  3  TPR_11          TPR repeat
        1.2    9.3   9.9      0.059   13.5   1.9    2.9  2  TPR_9           Tetratricopeptide repeat
        1.9    9.5  18.6        2.4    9.2   1.6    4.4  4  TPR_14          Tetratricopeptide repeat
        3.4    8.3  16.0        6.5    7.4   0.5    3.0  3  TPR_19          Tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> Asp_Arg_Hydrox  Aspartyl/Asparaginyl beta-hydroxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  161.5   0.0   6.8e-51   1.4e-47       1     157 []     219     381 ..     219     381 .. 0.89

  Alignments for each domain:
  == domain 1  score: 161.5 bits;  conditional E-value: 6.8e-51
                     ---HHHHHHHHHHHTT......S--B-TTGGGEESS......EEEEEEEESS-EE-HHHHT-HHHHHHHHH..H...S-GGGEEEEEEEEE-TTE CS
  Asp_Arg_Hydrox   1 eanwevIreEleallkeeeelkefeeeseedkgdis......WktfvLyaygaraeenckrcPktaellek..pevkasglklgealfsvlepgs 87 
                     e+++ +Ir+E+eal +++++l+      +++++  +      W++f+L+ +g + +enc+rcP ta+++e+  p ++ +    ge lfs+l+pg+
      KOO24087.1 219 ESQFAAIRAEVEALRSSQQQLFMSVGGRAAHDH--TlvaagkWTEFPLFGNGTKYTENCARCPVTAAIMERiaPAMELAFAGGGETLFSTLNPGT 311
                     578999********9866666544333333333..2347899*****************************756688888999************ PP

                     EEEEE-S..-TTSEEEEEEE--TTEEEEETTEEE---TTEEEEE-TTS-EEEEE-SSS-EEEEEEEEET. CS
  Asp_Arg_Hydrox  88 hikpHrgptngrlrlhLgLvvPeeceirvggetrtweeGevllfDdsfeHevwnetdeeRvvLlvdvwrp 157
                     h++pH+g  n+rl++hLg+ vP++c+ir g+e+r+w+eGe+l+fDds+eHev++ +d++RvvLl+++w+p
      KOO24087.1 312 HLRPHCGSSNTRLTAHLGILVPSGCSIRAGNEWREWREGECLVFDDSWEHEVRHLGDRDRVVLLINFWHP 381
                     *********************************************************************9 PP

>> Coatomer_E  Coatomer epsilon subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   8.7e-05      0.17     208     252 ..     123     167 ..     113     180 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 8.7e-05
                 HHHHHHTT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHTT--H CS
  Coatomer_E 208 AvvslllgryeeAeslLkeaLdkdakdeetLiNlvvaaqhlgkda 252
                  vv++++  y eA    + aL  +a +  +LiN + + q+l + +
  KOO24087.1 123 GVVQMQQAVYSEAAAAFEAALRLEATHRGALINGIHCLQLLPPAD 167
                 599********************************9999886654 PP

>> TPR_1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.3   0.0      0.36   7.2e+02      23      30 ..      67      74 ..      66      76 .. 0.80
   2 ?   -0.5   0.1      0.64   1.3e+03      16      33 ..      97     114 ..      97     115 .. 0.76
   3 ?    9.6   0.2   0.00041      0.82       2      31 ..     117     146 ..     116     149 .. 0.90

  Alignments for each domain:
  == domain 1  score: 0.3 bits;  conditional E-value: 0.36
                HHHHHHHH CS
       TPR_1 23 yyekALel 30
                +ye+AL+ 
  KOO24087.1 67 HYERALKQ 74
                79999986 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 0.64
                 -HHHHHHHHHHHHHHSTT CS
       TPR_1  16 kydeAleyyekALelnPn 33 
                 ++++Ale+ + A  l+P+
  KOO24087.1  97 DLKQALEHAKLAAGLQPD 114
                 568899998888777776 PP

  == domain 3  score: 9.6 bits;  conditional E-value: 0.00041
                 HHHHHHHHHHHHTT-HHHHHHHHHHHHHHS CS
       TPR_1   2 kalynlGnayfklgkydeAleyyekALeln 31 
                 +  y+lG++ +++  y eA +++e AL+l+
  KOO24087.1 117 EMQYQLGVVQMQQAVYSEAAAAFEAALRLE 146
                 6679***********************996 PP

>> TPR_7  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.1   0.0      0.53     1e+03      18      26 ..      64      72 ..      62      77 .. 0.60
   2 ?    8.8   0.5   0.00086       1.7       4      29 ..     121     146 ..     120     152 .. 0.85

  Alignments for each domain:
  == domain 1  score: 0.1 bits;  conditional E-value: 0.53
       TPR_7 18 AielyeqsL 26
                A ++ye++L
  KOO24087.1 64 ACGHYERAL 72
                556666644 PP

  == domain 2  score: 8.8 bits;  conditional E-value: 0.00086
       TPR_7   4 nLarlysrlGdyeeAielyeqsLalt 29 
                 +L++++ ++  y+eA+  +e++L+l+
  KOO24087.1 121 QLGVVQMQQAVYSEAAAAFEAALRLE 146
                 79*******************55553 PP

>> TPR_16  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.0   4.0     0.039        79       6      65 ..      22      76 ..      18      77 .. 0.80
   2 ?    2.9   0.3      0.09   1.8e+02      19      50 ..      67      95 ..      62      97 .. 0.82
   3 ?   13.0   6.0   6.2e-05      0.12      14      62 ..      99     144 ..      84     149 .. 0.85

  Alignments for each domain:
  == domain 1  score: 4.0 bits;  conditional E-value: 0.039
      TPR_16  6 aalragdyddAaaaleaalkrdpssPdaaeAllllgdaalrqgrlaeAa.alyraalraap 65
                 +l++g  ++A+a+l+++ + d     a+  l++lg+a  ++ + ++Aa   y++al++ p
  KOO24087.1 22 RLLQSGAAAEARALLQELAEED-----APITLFYLGVATGQL-EGEAAAcGHYERALKQLP 76
                68999999**************.....999999999987666.666777777777777655 PP

  == domain 2  score: 2.9 bits;  conditional E-value: 0.09
      TPR_16 19 aleaalkrdpssPdaaeAllllgdaalrqgrl 50
                 +e+alk+    P+ ++A+++l + + r+g  
  KOO24087.1 67 HYERALKQL---PLLHAARNNLIRGLMRRGKP 95
                599******...******99998877777765 PP

  == domain 3  score: 13.0 bits;  conditional E-value: 6.2e-05
      TPR_16  14 ddAaaaleaalkrdpssPdaaeAllllgdaalrqgrlaeAaalyraalr 62 
                  +A++ ++ a  ++   Pd ae+++ lg++  +q  + eAaa+++aalr
  KOO24087.1  99 KQALEHAKLAAGLQ---PDLAEMQYQLGVVQMQQAVYSEAAAAFEAALR 144
                 46777777777788...******************************96 PP

>> TPR_11  TPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.0      0.68   1.3e+03       7      16 ..      65      74 ..      62      76 .. 0.60
   2 ?    9.1   0.1   0.00051         1      11      41 ..      99     129 ..      97     129 .. 0.83
   3 ?    0.9   0.7      0.18   3.6e+02      10      24 ..     132     146 ..     132     148 .. 0.90

  Alignments for each domain:
  == domain 1  score: -0.9 bits;  conditional E-value: 0.68
      TPR_11  7 qGkyeeAiea 16
                 G ye A+++
  KOO24087.1 65 CGHYERALKQ 74
                4556666654 PP

  == domain 2  score: 9.1 bits;  conditional E-value: 0.00051
      TPR_11  11 eeAieaYkkAlkldPdnaeayynLGlayykq 41 
                 ++A+e+ k A  l Pd ae  y LG+++++q
  KOO24087.1  99 KQALEHAKLAAGLQPDLAEMQYQLGVVQMQQ 129
                 5666666777889**************9987 PP

  == domain 3  score: 0.9 bits;  conditional E-value: 0.18
      TPR_11  10 yeeAieaYkkAlkld 24 
                 y eA +a+++Al+l 
  KOO24087.1 132 YSEAAAAFEAALRLE 146
                 89**********996 PP

>> TPR_9  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   1.1         2     4e+03      36      62 ..      52      80 ..      27      91 .. 0.62
   2 ?   13.5   1.9     3e-05     0.059      10      60 ..      97     147 ..      94     178 .. 0.89

  Alignments for each domain:
  == domain 1  score: -1.9 bits;  conditional E-value: 2
       TPR_9 36 GlllaqlGclsaAladLeaylalap..da 62
                G++  ql+  +aA    e++l + p  +a
  KOO24087.1 52 GVATGQLEGEAAACGHYERALKQLPllHA 80
                45555555556666666666666664444 PP

  == domain 2  score: 13.5 bits;  conditional E-value: 3e-05
       TPR_9  10 dweralavverllllaPddpeerrdRGlllaqlGclsaAladLeaylalap 60 
                 d  +al+ + +   l+Pd +e  +  G++++q+  +s+A+a++ea+l+l+ 
  KOO24087.1  97 DLKQALEHAKLAAGLQPDLAEMQYQLGVVQMQQAVYSEAAAAFEAALRLEA 147
                 7789999999*************************************8765 PP

>> TPR_14  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.7   1.4      0.07   1.4e+02      11      33 ..      23      43 ..      18      54 .. 0.76
   2 ?    4.0   0.1     0.057   1.1e+02      19      41 ..      63      85 ..      48      87 .. 0.76
   3 ?    7.3   0.3     0.005       9.9       7      42 ..      85     123 ..      79     125 .. 0.72
   4 ?    9.2   1.6    0.0012       2.4       2      38 ..     117     153 ..     116     155 .. 0.91

  Alignments for each domain:
  == domain 1  score: 3.7 bits;  conditional E-value: 0.07
      TPR_14 11 llalGdpdeAiallrralalaPd 33
                ll++G  +eA+all+++ +   d
  KOO24087.1 23 LLQSGAAAEARALLQELAE--ED 43
                7899************955..33 PP

  == domain 2  score: 4.0 bits;  conditional E-value: 0.057
      TPR_14 19 eAiallrralalaPddaeawlll 41
                +A  +++ral++ P   +a+  l
  KOO24087.1 63 AACGHYERALKQLPLLHAARNNL 85
                4999*********9888888666 PP

  == domain 3  score: 7.3 bits;  conditional E-value: 0.005
      TPR_14   7 laeallalGdpdeAiallrra.la..laPddaeawllla 42 
                 l + l+++G+p++  ++l+ a la  l+Pd ae +++l+
  KOO24087.1  85 LIRGLMRRGKPADLKQALEHAkLAagLQPDLAEMQYQLG 123
                 788999**9888866666655433237899999999997 PP

  == domain 4  score: 9.2 bits;  conditional E-value: 0.0012
      TPR_14   2 eallalaeallalGdpdeAiallrralalaPddaeaw 38 
                 e++++l+ + +++  + eA+a++++al+l  +++ a+
  KOO24087.1 117 EMQYQLGVVQMQQAVYSEAAAAFEAALRLEATHRGAL 153
                 789*************************999888776 PP

>> TPR_19  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.4   0.5    0.0033       6.5      35      56 ..      23      44 ..      23      50 .. 0.80
   2 ?   -0.5   0.0      0.94   1.9e+03       9      35 ..      63      89 ..      62      97 .. 0.61
   3 ?    5.8   6.8      0.01        20       6      55 ..      97     146 ..      85     153 .. 0.90

  Alignments for each domain:
  == domain 1  score: 7.4 bits;  conditional E-value: 0.0033
      TPR_19 35 llalgqldeAealLdalpeedp 56
                ll++g  +eA+alL++l eed+
  KOO24087.1 23 LLQSGAAAEARALLQELAEEDA 44
                6788888888888888888875 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 0.94
      TPR_19  9 eAlalleqalqedpknaearllLAeal 35
                +A  ++e+al++ p   +ar +L++ l
  KOO24087.1 63 AACGHYERALKQLPLLHAARNNLIRGL 89
                566677777777776555555555544 PP

  == domain 3  score: 5.8 bits;  conditional E-value: 0.01
      TPR_19   6 dyaeAlalleqalqedpknaearllLAeallalgqldeAealLdalpeed 55 
                 d+ +Al++ + a    p+ ae +++L  +++++  + eA a+ +a+++ +
  KOO24087.1  97 DLKQALEHAKLAAGLQPDLAEMQYQLGVVQMQQAVYSEAAAAFEAALRLE 146
                 899****************************************9998765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (400 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       565  (0.0315132); expected 358.6 (0.02)
Passed bias filter:                      475  (0.0264934); expected 358.6 (0.02)
Passed Vit filter:                        53  (0.0029561); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.51u 0.25s 00:00:00.76 Elapsed: 00:00:00.42
# Mc/sec: 2845.38
//
Query:       KOO24088.1  [L=638]
Description: clathrin-adaptor gamma chain [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   1.7e-122  409.6  11.7     5e-121  404.8  11.1    1.9  2  Adaptin_N        Adaptin N terminal region
    9.9e-26   90.2   0.6    2.1e-25   89.2   0.6    1.6  1  Alpha_adaptinC2  Adaptin C-terminal domain
    1.6e-06   28.2  11.0    0.00033   20.7   5.5    3.0  3  Cnd1             non-SMC mitotic condensation complex subunit
     0.0029   18.2   1.6       0.16   12.6   0.2    3.0  2  Vac14_Fab1_bd    Vacuolar 14 Fab1-binding region
  ------ inclusion threshold ------
      0.021   15.0   0.3        1.6    9.2   0.0    3.9  4  HEAT             HEAT repeat
      0.025   15.0   2.9       0.73   10.3   0.2    3.7  3  HEAT_2           HEAT repeats
      0.034   14.2   0.1        1.2    9.2   0.1    2.9  1  V-ATPase_H_C     V-ATPase subunit H
       0.11   11.0   0.0       0.18   10.2   0.0    1.2  1  Head-tail_con    Bacteriophage head to tail connecting protei
       0.11   12.4   1.8       0.74    9.7   0.3    2.6  2  DUF3361          Domain of unknown function (DUF3361)
       0.13   12.0   3.5        9.3    6.1   0.1    3.8  4  RICTOR_M         Rapamycin-insensitive companion of mTOR, mid
        3.2    7.1   7.8         17    4.8   0.5    3.4  4  DUF5578          Family of unknown function (DUF5578)


Domain annotation for each model (and alignments):
>> Adaptin_N  Adaptin N terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  404.8  11.1  3.1e-124    5e-121       2     445 ..      22     484 ..      21     487 .. 0.95
   2 !    4.5   0.0    0.0066        11     474     514 ..     484     525 ..     482     537 .. 0.84

  Alignments for each domain:
  == domain 1  score: 404.8 bits;  conditional E-value: 3.1e-124
                 HHHCCHHHHHHCCSSS.-SCHHHHHHHHHHHHHHHCT---GHHHHHHHCCCCSS-CHHHHHHHHHHHHHCTTSCCHHCCCCHHHHHHCCSSSHHHHHHH CS
   Adaptin_N   2 ekriqqelaeilnsnk.dddekkkeavkkliylialGedvsflffevvklvaskdfelKrlvYlylellaeesedlalLvtnslqkDlkdpnqlirglA 99 
                 ++ i++e+a i++ +k +++e ++++v+kl+++++lG++++++++e++kl+a ++f +Kr++Yl l++l++e++++++Lv nsl++Dl+ +nq+i glA
  KOO24088.1  22 RACIHKECASIRTAFKeESNELRHRNVAKLLFIHMLGYPTHWGQMECLKLIAGNKFLEKRIGYLGLMILLDERQEVLMLVENSLKNDLQAQNQYIAGLA 120
                 6789************99999****************************************************************************** PP

                 HHHHCCC--CCCHHHHHHHHHHHHT-SSHHHHHHHHHHHHHCCCCCHHCCCCCHHHHHHHCTT-SSHHHHHHHHHHHHHHHCCCCCCC.....HHHHHH CS
   Adaptin_N 100 LrvLssirvpelaedlapaikkllkdrspyvrkkAalailklykkdpdllrkqlveeikellsdkdpgvvlaAvalleeikkndrlll.....kllpkl 193
                  +++++i+++e+++dl p+++kl++ ++p+v kkAal+++++++k p+l+   +v+++  ll ++++ v+l+ ++l+ e+ +  +  +     +    l
  KOO24088.1 121 CCSIGNISSAEICRDLSPEVEKLMVGSNPFVAKKAALCSIRILRKCPELVDT-YVDRVGTLLGSRNHAVLLTSLKLMREM-CIIEPGMvdqlrRHTATL 217
                 *************************************************966.7**************************.777774443233333344 PP

                 HCCHHHHH...............HCS-HHHHHHHHHHHCC---SSHHHH..HHHHHHHCGGCG.......CSSCHHHHHHHHHCCHCCCCSTHHHCCHH CS
   Adaptin_N 194 vrrLcnll...............teldpwlqvkiiklltrlarqepeerskkellesllnllq.......ssnnaVlletvnlivelapknelivlavn 270
                 +      l               +++dp+lqv+i+++l++l  ++ e +++   ++++l++++       +++na+l+e+v +i+ ++ ++ l+vla+n
  KOO24088.1 218 IAA----LknlvlsgyapehdvhGIVDPFLQVEILRMLRILGTRHAETSDQ---MNDILAQVAtntesakNAGNAILYECVLTIMAIEVESGLRVLAIN 309
                 444....25666*******************************99999965...9999999999999******************************** PP

                 CHHHHHHSSCCTCHHHHHCHHHHHHHHXXTTTT.TTTCCCCSXXTTSXHHHHHHHHHHHCCCXXTTTHHHHHHHHHHHTTSSXXHHHHHHHHHHHHHHH CS
   Adaptin_N 271 aLvrllsskdenlryvaLrtllkivkkepkavq.hldlkifllktdddvsirlkaldlllklvdesNvkeivkeLkkyvkevadedfksklvkaIgrla 368
                 +L+r+l ++d+n+ryvaL+tl+k+v ++ +avq h+++++++lk d d+sir++al+l+++lv+e Nvk +vkeL++y+ +++d +fk++l + I+++ 
  KOO24088.1 310 ILGRFLINRDNNIRYVALNTLHKVVGQDAQAVQrHRNTIVDCLK-DNDSSIRQRALELVYALVNEANVKVLVKELLSYL-MACDVEFKDELTQRICHVV 406
                 ********************************************.**********************************.999**************** PP

                 HHSCCHHHHHHHHHHHHHTTXXHHHHHHHHHHHHHHHHHSTTTSTTCHHHHCCTCCG.XXSHHHHHHHHHHHHHTTTT CS
   Adaptin_N 369 ekfatdaewvldvllellslsgesvkdeivevirdliqkvpelheeiiekLaellek.ieseearaaaiWllGeygel 445
                 ek+atd+ew++d++++ l  s +++++e v +++ li+ +p+l++++  kL+++l +  +++ +++ a+W++Gey   
  KOO24088.1 407 EKYATDKEWHVDTIIQTLLVSTSFTSEETVCSLIALITSNPDLQAYATHKLCATLAArTTQPVLLQLAVWCVGEYEYT 484
                 *********************************************************999999************765 PP

  == domain 2  score: 4.5 bits;  conditional E-value: 0.0066
                 HHHHHHHHHHCXGCC.THXHHH.HHHHHHHHXXSHHHHHHHH CS
   Adaptin_N 474 iltalvKlyltspdketqekli.qlvlslatssdlevrdRav 514
                  ++al+Kl  ++p  +    +i + + +++ts +le+++R+ 
  KOO24088.1 484 TINALMKLTSRFPAGTPAHAMIhKQLAHYSTSMSLELQQRSA 525
                 5799*********99998866626788999999*******97 PP

>> Alpha_adaptinC2  Adaptin C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   89.2   0.6   1.3e-28   2.1e-25       4     111 .]     524     635 ..     521     635 .. 0.98

  Alignments for each domain:
  == domain 1  score: 89.2 bits;  conditional E-value: 1.3e-28
                      EEEEETTEEEEEEEEE.TTSTTEEEEEEEEEE-SSS-EEEEEEEEEEBTTCEEEEEEES-S-B-TTCEEEEEEEEEEES..CTTS-EEEEEEEE CS
  Alpha_adaptinC2   4 vlyekddlqIgfkfek.perpgqiritlsftNkssqpisnfsfqaavpkslklqlqppsstvlppnpggqitqvllien..pskkplrmrlris 94 
                       + +kd+lqI f ++k p++p+++r++++f N++  +++ ++fq+avpk+++lq++ppsst + + ++g+++q + ++n  +++kp+ +r++i 
       KOO24088.1 524 SAWSKDGLQIMFMATKdPSNPSVTRVEATFNNSTGGDMEGLNFQVAVPKYMQLQMKPPSSTAVTAGSSGSVKQLFQLANsmHGQKPIVLRVKID 617
                      6789************************************************************99**************************** PP

                      EE.CTCEEEEEEEEEEE- CS
  Alpha_adaptinC2  95 yk.vgqaikeqidvlkfp 111
                      y+  g a++e ++v +fp
       KOO24088.1 618 YNtMGRAVSETGQVDNFP 635
                      *****************9 PP

>> Cnd1  non-SMC mitotic condensation complex subunit 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.0       2.7   4.4e+03     108     124 ..      57      73 ..      16      80 .. 0.57
   2 !    9.7   0.2   0.00048      0.79       4     122 ..     118     250 ..     115     295 .. 0.74
   3 !   20.7   5.5     2e-07   0.00033      25     160 ..     310     443 ..     285     445 .. 0.89

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 2.7
        Cnd1 108 lnecsewgqitilefLl 124
                 l   + wgq++ l++++
  KOO24088.1  57 LGYPTHWGQMECLKLIA 73 
                 44578899999888876 PP

  == domain 2  score: 9.7 bits;  conditional E-value: 0.00048
        Cnd1   4 alairtlgcirvpnlveylvepLrkrLkDedpyVRktaaivvakLilndmvkekgflselaklleDenprVvanalaalteiseksenaiynllpdiis 102
                 +la  ++g i   ++   l+++++k +  ++p V k aa++ ++++++    +   ++++ +ll   n+ V   +l ++ e+   ++ ++ +l ++++ 
  KOO24088.1 118 GLACCSIGNISSAEICRDLSPEVEKLMVGSNPFVAKKAALCSIRILRKCPELVDTYVDRVGTLLGSRNHAVLLTSLKLMREMCIIEPGMVDQLRRHTAT 216
                 68889999****************************************999999*****************9999999999988887666666666555 PP

        Cnd1 103 klsdalne...............csewgqitilef 122
                  +  al++               ++   q++il++
  KOO24088.1 217 LIA-ALKNlvlsgyapehdvhgiVDPFLQVEILRM 250
                 555.4444444455555555555444444444444 PP

  == domain 3  score: 20.7 bits;  conditional E-value: 2e-07
        Cnd1  25 pLrkrLkDedpyVRktaaivvakLilndmvkekgflselaklleDenprVvanalaalteiseksenaiynllpdiisklsdalnecsewgqitilefL 123
                  L + L  +d  +R  a+ ++ k++ +d   ++ + +++ ++l+D+++++++ al +   + +++  ++  l+++++s+l ++  e++ +  + i+ ++
  KOO24088.1 310 ILGRFLINRDNNIRYVALNTLHKVVGQDAQAVQRHRNTIVDCLKDNDSSIRQRALELVYALVNEA--NVKVLVKELLSYLMACDVEFKDELTQRICHVV 406
                 46777888999************************************************999998..5777899************************* PP

        Cnd1 124 lsyipkdkqeaeslveklcprlqhansavvlaaikvi 160
                  +y ++++ + +++++ l    + + ++ v++ i++i
  KOO24088.1 407 EKYATDKEWHVDTIIQTLLVSTSFTSEETVCSLIALI 443
                 *********9***********9999999999999877 PP

>> Vac14_Fab1_bd  Vacuolar 14 Fab1-binding region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.4   0.1     0.035        57      30      62 ..     309     341 ..     278     348 .. 0.65
   2 !   12.6   0.2   9.7e-05      0.16      30      64 ..     346     380 ..     335     400 .. 0.83

  Alignments for each domain:
  == domain 1  score: 4.4 bits;  conditional E-value: 0.035
  Vac14_Fab1_bd  30 kpvlkcfsDkdsrvRyyacEslyniakvakgev 62 
                    +++ + +  +d+ +Ry a  +l+ ++ +  ++v
     KOO24088.1 309 NILGRFLINRDNNIRYVALNTLHKVVGQDAQAV 341
                    3333566799*************9987766655 PP

  == domain 2  score: 12.6 bits;  conditional E-value: 9.7e-05
  Vac14_Fab1_bd  30 kpvlkcfsDkdsrvRyyacEslyniakvakgevlk 64 
                    +++++c++D+ds +R  a E +y ++  a+ +vl 
     KOO24088.1 346 NTIVDCLKDNDSSIRQRALELVYALVNEANVKVLV 380
                    689**********************9999988885 PP

>> HEAT  HEAT repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.0       1.9     3e+03       6      29 ..     141     164 ..     136     166 .. 0.72
   2 ?    0.0   0.0      0.88   1.4e+03      12      26 ..     318     332 ..     308     335 .. 0.80
   3 ?    9.2   0.0     0.001       1.6       4      28 ..     347     371 ..     345     373 .. 0.91
   4 ?   -2.0   0.0       3.9   6.4e+03       4      16 ..     405     417 ..     402     417 .. 0.81

  Alignments for each domain:
  == domain 1  score: -1.0 bits;  conditional E-value: 1.9
                 HHHHT-SSHHHHHHHHHHHHHHHH CS
        HEAT   6 lkllsDpspeVReaAakaLgalae 29 
                  kl+  ++p+V + Aa++  ++++
  KOO24088.1 141 EKLMVGSNPFVAKKAALCSIRILR 164
                 566666899**9999999666665 PP

  == domain 2  score: 0.0 bits;  conditional E-value: 0.88
                 SSHHHHHHHHHHHHH CS
        HEAT  12 pspeVReaAakaLga 26 
                  + ++R+ A+++L +
  KOO24088.1 318 RDNNIRYVALNTLHK 332
                 57899******9976 PP

  == domain 3  score: 9.2 bits;  conditional E-value: 0.001
                 HHHHHHT-SSHHHHHHHHHHHHHHH CS
        HEAT   4 lllkllsDpspeVReaAakaLgala 28 
                 +++ +l+D+++++R+ A++ + al+
  KOO24088.1 347 TIVDCLKDNDSSIRQRALELVYALV 371
                 6899***************999987 PP

  == domain 4  score: -2.0 bits;  conditional E-value: 3.9
                 HHHHHHT-SSHHH CS
        HEAT   4 lllkllsDpspeV 16 
                 ++ k  +D++++V
  KOO24088.1 405 VVEKYATDKEWHV 417
                 5778899****98 PP

>> HEAT_2  HEAT repeats
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.2   0.0      0.62     1e+03       6      53 ..     107     157 ..     102     171 .. 0.77
   2 ?   10.3   0.2   0.00045      0.73      11      69 ..     317     381 ..     303     386 .. 0.78
   3 ?    1.3   0.1      0.28   4.6e+02       4      40 ..     439     474 ..     436     476 .. 0.86

  Alignments for each domain:
  == domain 1  score: 0.2 bits;  conditional E-value: 0.62
      HEAT_2   6 qalendpdpevrraairaLgrignpea....lpaLvellededpavRraaae 53 
                 + l +  +++++  a+ ++g+i + e+     p + +l+  ++p v + aa 
  KOO24088.1 107 NDL-QAQNQYIAGLACCSIGNISSAEIcrdlSPEVEKLMVGSNPFVAKKAAL 157
                 556.577888888999999999888444443888999999999999888875 PP

  == domain 2  score: 10.3 bits;  conditional E-value: 0.00045
      HEAT_2  11 dpdpevrraairaLg......rignpealpaLvellededpavRraaaeaLgaigdpealpaLke 69 
                   d ++r+ a+ +L        ++ ++ ++++v++l+d d+ +R+ a e   a+ +++++++L +
  KOO24088.1 317 NRDNNIRYVALNTLHkvvgqdAQAVQRHRNTIVDCLKDNDSSIRQRALELVYALVNEANVKVLVK 381
                 4567889999999995554433444577********************99999988888888876 PP

  == domain 3  score: 1.3 bits;  conditional E-value: 0.28
      HEAT_2   4 LlqalendpdpevrraairaLg.rignpealpaLvell 40 
                 L+++++  ++p++++ a + L  +++ ++++p L++l+
  KOO24088.1 439 LIALIT--SNPDLQAYATHKLCaTLAARTTQPVLLQLA 474
                 667674..8999******99997899999*****9986 PP

>> V-ATPase_H_C  V-ATPase subunit H
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.2   0.1   0.00076       1.2      49     114 ..     313     372 ..     307     375 .. 0.71

  Alignments for each domain:
  == domain 1  score: 9.2 bits;  conditional E-value: 0.00076
  V-ATPase_H_C  49 klleeskdktvlavalnDigelvkllpegkkvleklkaKekimellehedeevkyeALkavqkllv 114
                   ++l  ++d+++  valn + ++v +     + +   +++++i+++l+++d++++++AL+ v +l+ 
    KOO24088.1 313 RFL-INRDNNIRYVALNTLHKVVGQ---DAQAV--QRHRNTIVDCLKDNDSSIRQRALELVYALVN 372
                   555.356677777888887777766...22233..3468899999999999999999999988875 PP

>> Head-tail_con  Bacteriophage head to tail connecting protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.0   0.00011      0.18     415     473 ..     572     631 ..     561     634 .. 0.90

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.00011
  Head-tail_con 415 revkveyvSpLaqaqkageaqaverllqfvsalaqlapevld.kvdldeavdeladalGv 473
                    + +++++++p  +a+ ag +++v++l q ++++++ +p vl  k+d++ + + + ++  v
     KOO24088.1 572 KYMQLQMKPPSSTAVTAGSSGSVKQLFQLANSMHGQKPIVLRvKIDYNTMGRAVSETGQV 631
                    56899*******************************************999988877666 PP

>> DUF3361  Domain of unknown function (DUF3361)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   0.3   0.00045      0.74      67     130 ..     318     376 ..     305     402 .. 0.82
   2 ?    0.7   0.1      0.27   4.5e+02      94     133 ..     412     451 ..     398     472 .. 0.76

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 0.00045
     DUF3361  67 adasilqrslaiLesivlnsselyelvekevtlesLiehLqssnqeiqtnalaLlnALllkadd 130
                  d++i   +l+ L ++v  +    + v+++   +++++ L+++++ i + al L+ AL+++a+ 
  KOO24088.1 318 RDNNIRYVALNTLHKVVGQDA---QAVQRHR--NTIVDCLKDNDSSIRQRALELVYALVNEANV 376
                 578999999999999998887...6676665..689************************9984 PP

  == domain 2  score: 0.7 bits;  conditional E-value: 0.27
     DUF3361  94 ekevtlesLiehLqssnqeiqtnalaLlnALllkaddskr 133
                 +ke +++++i+ L +s++  + ++++ l+AL++  +d + 
  KOO24088.1 412 DKEWHVDTIIQTLLVSTSFTSEETVCSLIALITSNPDLQA 451
                 4677799999999999999999999999999988776554 PP

>> RICTOR_M  Rapamycin-insensitive companion of mTOR, middle domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.0       1.4   2.3e+03      19      50 ..     169     200 ..     167     236 .. 0.71
   2 ?    6.1   0.1    0.0057       9.3      61     103 ..     287     333 ..     260     334 .. 0.70
   3 ?   -0.1   0.0      0.48   7.8e+02      75     101 ..     342     368 ..     336     371 .. 0.83
   4 ?    3.4   0.1     0.038        62      45     100 ..     402     457 ..     398     461 .. 0.82

  Alignments for each domain:
  == domain 1  score: -1.6 bits;  conditional E-value: 1.4
    RICTOR_M  19 lsrgYfkfiGvlsssknGlklLekwkiftlly 50 
                 l+ +Y   +G+l  s n   lL+  k+   + 
  KOO24088.1 169 LVDTYVDRVGTLLGSRNHAVLLTSLKLMREMC 200
                 56788899999999999988888888776554 PP

  == domain 2  score: 6.1 bits;  conditional E-value: 0.0057
    RICTOR_M  61 llklilssldysvdghiRi....ilskaLtnssekiRlyatkhLrkl 103
                 l + +l+ +  +v++ +R+    il + L n +++iR+ a++ L+k+
  KOO24088.1 287 LYECVLTIMAIEVESGLRVlainILGRFLINRDNNIRYVALNTLHKV 333
                 55555555566666666642222899******************986 PP

  == domain 3  score: -0.1 bits;  conditional E-value: 0.48
    RICTOR_M  75 ghiRiilskaLtnssekiRlyatkhLr 101
                 ++ R+++  +L++++++iR  a++++ 
  KOO24088.1 342 QRHRNTIVDCLKDNDSSIRQRALELVY 368
                 57799999*************999875 PP

  == domain 4  score: 3.4 bits;  conditional E-value: 0.038
    RICTOR_M  45 iftllyklvelks.rdd.llklilssldysvdghiRiilskaLtnssekiRlyatkhL 100
                 i ++++k+++ k+ + d +++++l s  ++ ++ +  ++  aL +s+ +++ yat++L
  KOO24088.1 402 ICHVVEKYATDKEwHVDtIIQTLLVSTSFTSEETVCSLI--ALITSNPDLQAYATHKL 457
                 556777777777776666999999999***999999998..899999********998 PP

>> DUF5578  Family of unknown function (DUF5578)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.8   0.0     0.078   1.3e+02     200     252 ..     151     202 ..     142     220 .. 0.79
   2 ?   -4.0   0.0       4.8   7.8e+03     105     126 ..     247     268 ..     245     280 .. 0.67
   3 ?    4.8   0.5      0.01        17     204     265 ..     325     386 ..     317     389 .. 0.82
   4 ?    2.7   0.1     0.045        73     149     200 ..     417     467 ..     413     487 .. 0.78

  Alignments for each domain:
  == domain 1  score: 1.8 bits;  conditional E-value: 0.078
     DUF5578 200 kaqqlalqtlrvvqeivkeakpsivepllelLkslhlevqyeaielikelmst 252
                  a++ al ++r++++ ++e   + v+++ +lL s +  v   +++l++e+   
  KOO24088.1 151 VAKKAALCSIRILRK-CPELVDTYVDRVGTLLGSRNHAVLLTSLKLMREMCII 202
                 588999999999876.56777889************************98755 PP

  == domain 2  score: -4.0 bits;  conditional E-value: 4.8
     DUF5578 105 vltlleilglkqlkeedkaeal 126
                 +l +l ilg ++++ +d+++ +
  KOO24088.1 247 ILRMLRILGTRHAETSDQMNDI 268
                 5667777777777777766544 PP

  == domain 3  score: 4.8 bits;  conditional E-value: 0.01
     DUF5578 204 lalqtlrvvqeivkeakpsivepllelLkslhlevqyeaielikelmstevraallkglval 265
                 +al+tl+ v  +  +a +   +++++ Lk  ++ +++ a+el+ +l+++   + l+k+l++ 
  KOO24088.1 325 VALNTLHKVVGQDAQAVQRHRNTIVDCLKDNDSSIRQRALELVYALVNEANVKVLVKELLSY 386
                 67888988888888899999999***********************9886666666666654 PP

  == domain 4  score: 2.7 bits;  conditional E-value: 0.045
     DUF5578 149 vravaeclakskseetqeeaqklleslaegnPkyqkqvykgliallacsspk 200
                 v ++ ++l  s+s +++e++ +l+  l ++nP++q    + l a la+++ +
  KOO24088.1 417 VDTIIQTLLVSTSFTSEETVCSLI-ALITSNPDLQAYATHKLCATLAARTTQ 467
                 666777888888888888888877.57899**************99987654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (638 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       818  (0.0456244); expected 358.6 (0.02)
Passed bias filter:                      577  (0.0321825); expected 358.6 (0.02)
Passed Vit filter:                        61  (0.00340231); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.69u 0.31s 00:00:01.00 Elapsed: 00:00:00.46
# Mc/sec: 4144.98
//
Query:       KOO24089.1  [L=270]
Description: syntaxin-10 isoform 1 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    4.8e-24   84.8   0.9    6.7e-24   84.3   0.9    1.2  1  Syntaxin-6_N  Syntaxin 6, N-terminal


Domain annotation for each model (and alignments):
>> Syntaxin-6_N  Syntaxin 6, N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   84.3   0.9   3.7e-28   6.7e-24       1      98 [.       3      95 ..       3      96 .. 0.96

  Alignments for each domain:
  == domain 1  score: 84.3 bits;  conditional E-value: 3.7e-28
  Syntaxin-6_N  1 DPFfevkeeVqkslnkaeslyrrwerlledtssstseeldetrteLrkalrsiewdledLeetvriveknpskfkidekelsrrrafveevreevkem 98
                  DP++ v+eeV++s++ + +l+++w +l ++     s+++++t++eL + lr iewdl+dLe+tv+ive n+ kf++de +++ r++f+e +r+++ ++
    KOO24089.1  3 DPYLAVREEVENSVRVVVELHTKWLSLDSK-----SDNFEWTSSELLSGLRAIEWDLQDLEDTVSIVEGNRIKFQLDEGDMNARKEFIETTRRQIVTI 95
                  9***********************996554.....99*********************************************************9776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (270 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       470  (0.0262145); expected 358.6 (0.02)
Passed bias filter:                      349  (0.0194657); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.28s 00:00:00.70 Elapsed: 00:00:00.42
# Mc/sec: 1943.19
//
Query:       KOO24090.1  [L=416]
Description: subtilisin-like protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
  ------ inclusion threshold ------
      0.051   12.8   0.6      0.087   12.1   0.6    1.4  1  Peptidase_S8  Subtilase family


Domain annotation for each model (and alignments):
>> Peptidase_S8  Subtilase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.6   4.8e-06     0.087     153     266 ..     197     341 ..     166     365 .. 0.74

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 4.8e-06
                   CCT-EEEEE--SS-T-HH.............EEE-TTCEEC...TTTSTTCEEEEEES....TTSSB-TT--B-TT.......-EEEE-S-..CCCC CS
                   xxxxxxxxxxxxxxxxxx.............xxxxxxxxxx...xxxxxxxxxxxxxx....xxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxx RF
  Peptidase_S8 153 kkgvlvviSaGNngktgs.............slqagspvgt...pstsknvitvgayt....tegkiapfSsrGpssdgklkpdivapGgn..ivst 227
                    +g+ v  S+G  g   s               q g+++++   p +s  +++vg+++    +++k   +S +G  +     ++ + p+ +   v+ 
    KOO24090.1 197 LRGTSVFGSSGDGGSHWSfgpfhgegkmpriLNQIGCEYQFpvfPTSSPYIVSVGGTDwkngDPKKPKMWSGSGGGFS----WQFAQPAHQqaTVER 289
                   45667777777777444466666666666665567777777556777889999****9****9999999**9999986....888888888654555 PP

                   CCCCCHHHTTTHH............EEEE-SHHHCHHHHHHHHHHHHH.HHT CS
                   xxxxxxxxxxxxx............xxxxxxxxxxxxxxxxxxxxxxx.xxx RF
  Peptidase_S8 228 wsrqsnnsaglss............yqsmsGTSmAsPnaagaaAllls.alp 266
                   + + + + + +ss              +++GTS++sP  ag + ++ + +l+
    KOO24090.1 290 YLTTTADLPASSSfnasgraypdisAVAVEGTSQSSPTFAGLFSMIVDmRLN 341
                   544444444444477777******999**************99998875555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (416 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       429  (0.0239277); expected 358.6 (0.02)
Passed bias filter:                      361  (0.020135); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.21s 00:00:00.70 Elapsed: 00:00:00.39
# Mc/sec: 3185.28
//
Query:       KOO24091.1  [L=305]
Description: bromodomain associated family expressed [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    4.5e-13   49.5   0.7    4.5e-13   49.5   0.7    2.1  2  TAF8_C       Transcription factor TFIID complex subunit 8 C-t
    3.7e-08   33.3   0.0    6.9e-08   32.4   0.0    1.3  1  Bromo_TP     Bromodomain associated
  ------ inclusion threshold ------
       0.18   11.9   0.0       0.32   11.1   0.0    1.3  1  TFIID-31kDa  Transcription initiation factor IID, 31kD subuni
       0.98    9.7   4.0       0.47   10.7   0.8    2.0  2  HemY_N       HemY protein N-terminus


Domain annotation for each model (and alignments):
>> TAF8_C  Transcription factor TFIID complex subunit 8 C-term
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.5   0.7     1e-16   4.5e-13       1      49 []     127     175 ..     127     175 .. 0.97
   2 ?   -4.1   2.6         4   1.8e+04       3      11 ..     197     205 ..     196     206 .. 0.79

  Alignments for each domain:
  == domain 1  score: 49.5 bits;  conditional E-value: 1e-16
      TAF8_C   1 yiPshlPpfPppHTYkrTpvyneretdpkkirekaaeqsrlaekaLrkL 49 
                 y+P++lPpfP++ TY+rT +   re+d  + ++++ + +r+a+ +L+ L
  KOO24091.1 127 YVPDFLPPFPEKRTYVRTAMHAVRENDAPAAKKRRSKHKRQAQDSLLAL 175
                 9*********************************************865 PP

  == domain 2  score: -4.1 bits;  conditional E-value: 4
      TAF8_C   3 PshlPpfPp 11 
                 P+ lP++P 
  KOO24091.1 197 PPPLPALPA 205
                 777999997 PP

>> Bromo_TP  Bromodomain associated
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.4   0.0   1.5e-11   6.9e-08      20      69 ..      39      88 ..      36      91 .. 0.92

  Alignments for each domain:
  == domain 1  score: 32.4 bits;  conditional E-value: 1.5e-11
                T-SEE-HHHHHHHHHHHHHHHHHHHHHHHHHH.TTSS-SS--HHHHHHHHH CS
    Bromo_TP 20 GfdsaeesaLEtLteiaqkYirelgeqaksfa.ehagRseptlkDvvltLq 69
                G++++e sa E+L +i+++Y+r++g   ++ a ehagR e++l D+ ++L+
  KOO24091.1 39 GYEAIERSASEALLDIFTRYMRSIGTA-SRLAaEHAGRAESNLADMLVGLD 88
                9************************99.66655*************99997 PP

>> TFIID-31kDa  Transcription initiation factor IID, 31kD subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   7.1e-05      0.32      21      78 ..      41      93 ..      36     120 .. 0.74

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 7.1e-05
  TFIID-31kDa 21 teyeerVvlqLldfayrytssvLedAkvlaehakkkevslddvrlAiqsrlekqfkep 78
                 +++e    + Lld+  ry+ s+ + +++ aeha+++e +l d+ + + s     ++++
   KOO24091.1 41 EAIERSASEALLDIFTRYMRSIGTASRLAAEHAGRAESNLADMLVGLDS-----VRAA 93
                 5677888899***************************776666554433.....2234 PP

>> HemY_N  HemY protein N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.1      0.59   2.7e+03      77      90 ..      68      81 ..      44      93 .. 0.59
   2 ?   10.7   0.8    0.0001      0.47      61     102 ..     140     180 ..     137     185 .. 0.86

  Alignments for each domain:
  == domain 1  score: -1.4 bits;  conditional E-value: 0.59
      HemY_N 77 rAekaaakaaklse 90
                 A ++a +a+++++
  KOO24091.1 68 LAAEHAGRAESNLA 81
                33344444444433 PP

  == domain 2  score: 10.7 bits;  conditional E-value: 0.0001
      HemY_N  61 ealseGlialaeGdfarAekaaakaaklseapllayllaAqA 102
                 + +++++ a+ e d+ +A+k  +k++++++++ l +l++A A
  KOO24091.1 140 TYVRTAMHAVRENDAPAAKKRRSKHKRQAQDS-LLALTEAMA 180
                 56789**************************9.777888877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (305 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       411  (0.0229238); expected 358.6 (0.02)
Passed bias filter:                      304  (0.0169558); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.43u 0.20s 00:00:00.63 Elapsed: 00:00:00.36
# Mc/sec: 2505.67
//
Query:       KOO24092.1  [L=380]
Description: hypothetical protein Ctob_004662 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.2e-81  274.2  16.8    1.4e-81  274.0  16.8    1.0  1  TPT       Triose-phosphate Transporter family
    9.4e-12   45.3  28.0    2.8e-07   30.8   7.4    2.3  2  EamA      EamA-like transporter family
    0.00083   18.6  13.4     0.0091   15.2  13.4    2.2  1  UAA       UAA transporter family


Domain annotation for each model (and alignments):
>> TPT  Triose-phosphate Transporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  274.0  16.8   2.4e-85   1.4e-81       2     290 .]      46     349 ..      45     349 .. 0.94

  Alignments for each domain:
  == domain 1  score: 274.0 bits;  conditional E-value: 2.4e-85
         TPT   2 klgllfllWYllnvvfnilnKkilnvfpyPltvsavqllvgsvlilvlwa....lglkk........rpkisseflkailplalvktlghvlavvslsk 88 
                 k+ l f+ WY+l++v+ +lnK++lnv ++P++ savqllvg ++i +lw+    +glk          p+++ + l+++ ++al  +lghvl++vs + 
  KOO24092.1  46 KVPLAFIGWYVLSIVYSLLNKEVLNVWQFPVVFSAVQLLVGALWIGALWMplptFGLKArrfapvrePPRLTRAELSQVSIVALWLALGHVLSTVSPAY 144
                 67789*******************************************97333224444778888888999999************************* PP

         TPT  89 vaVSfthtvKasePiFtvilsrlllgeklsllvylsLlpivgGvalasvtElsFnligfisAlisnltfslrnifsKkllkklkd...ldalnlfaiit 184
                  +V ft++vK++eP+Ft  +s+++l++++s+ vylsL+p++ Gvalas+ E+sF +i++is l+sn++f+lr i +K+++ k k    lda nl+ ++t
  KOO24092.1 145 GTVAFTNVVKTLEPLFTCFFSAIFLKQVFSVPVYLSLVPVIFGVALASANEVSFSMISLISGLLSNVCFALRAISAKRVMGK-KVgdnLDAQNLYGVLT 242
                 ********************************************************************************99.33347*********** PP

         TPT 185 ilslllllPvallveg.vlktpsllkstkvslkevllllllsgvlfhlynqvaymvLervspvthsvantvKrvvvIvlsvlvfknpvsllnaiGtava 282
                 i++l+ ++P+all eg + +  +l++ +kv+l+++l +ll sg+ +++yn++a+ +L+ + pvth+vant+Krv vIvlsvl f+np++l  a+G+a+a
  KOO24092.1 243 IVALVAIVPLALLAEGrTIVAGTLATVEKVGLQRFLRMLLYSGLSHYTYNECAFLALDSIHPVTHAVANTIKRVAVIVLSVLYFRNPLTLTGALGSAIA 341
                 ****************777777777777899******************************************************************** PP

         TPT 283 ivGvflYs 290
                 ivGv+lYs
  KOO24092.1 342 IVGVMLYS 349
                 *******8 PP

>> EamA  EamA-like transporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.4  12.5   7.4e-08   0.00044      18     136 ..      62     192 ..      47     193 .. 0.75
   2 !   30.8   7.4   4.7e-11   2.8e-07       4     136 ..     203     349 ..     200     350 .. 0.88

  Alignments for each domain:
  == domain 1  score: 20.4 bits;  conditional E-value: 7.4e-08
        EamA  18 fvlskillrkv.spltltfvrfliagilllii......allkegkl......aklslkdwllllllgllgtvlafllffyalkktsasnaslitslePv 103
                  +l k +l+ +  p+ +++v++l++++   ++        lk++++      ++l+ ++ l+ + + +l  +l+++l + +  ++++++  ++ +leP+
  KOO24092.1  62 SLLNKEVLNVWqFPVVFSAVQLLVGALWIGALwmplptFGLKARRFapvrepPRLT-RAELSQVSIVALWLALGHVLSTVSPAYGTVAFTNVVKTLEPL 159
                 55556666666336678888888777777443334344444444445553322233.346777888889****************************** PP

        EamA 104 ftlilsvlllgekltlkqllgivlillGvllil 136
                 ft ++s+++l++ +++  +l++v +++Gv+l +
  KOO24092.1 160 FTCFFSAIFLKQVFSVPVYLSLVPVIFGVALAS 192
                 ******************************975 PP

  == domain 2  score: 30.8 bits;  conditional E-value: 4.7e-11
        EamA   4 illallaalfwaiyfvlskil.....lrkvspltltfvrfliagillliiallkegkl.........aklslkdwllllllgllgtvlafllffyalkk 88 
                 ++  ll+ +++a+ ++ +k++       +++ + l +v +++a ++ +++all eg+          +k  l+ +l +ll++ l+   ++ + f al +
  KOO24092.1 203 LISGLLSNVCFALRAISAKRVmgkkvGDNLDAQNLYGVLTIVALVAIVPLALLAEGRTivagtlatvEKVGLQRFLRMLLYSGLSHYTYNECAFLALDS 301
                 677888888888888777555322225666999*************************9999888887888888999999999**************** PP

        EamA  89 tsasnaslitslePvftlilsvlllgekltlkqllgivlillGvllil 136
                 + + + ++++++  v +++lsvl+++ +ltl+  lg +++++Gv+l +
  KOO24092.1 302 IHPVTHAVANTIKRVAVIVLSVLYFRNPLTLTGALGSAIAIVGVMLYS 349
                 ********************************************9975 PP

>> UAA  UAA transporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2  13.4   1.5e-06    0.0091      97     300 ..     155     350 ..     121     352 .. 0.62

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 1.5e-06
         UAA  97 ssklipvmilGililgkrYsllqylsvllltlGviiftllsakdkkedskeslnkfllGiallvlallldavlglvqekly.kkygkhsk.ealfyshl 193
                     + + + ++++l++ +s+  yls++ +  Gv +++        ++     +++++ ++  +l+ ++ a+ ++   +++ kk g + + ++l+++  
  KOO24092.1 155 TLEPLFTCFFSAIFLKQVFSVPVYLSLVPVIFGVALASA-------NEV----SFSMISLISGLLSNVCFALRAISAKRVMgKKVGDNLDaQNLYGVLT 242
                 555555666666666666666666666666666666655.......221....2222222222233333333333333333244444444455554332 PP

         UAA 194 lslplflllqgellsavkflsesedval..lslpsklfylllnvltqyvcikgVlilisefgaltvtlvltlRKfvslllSillFknpltlqhlvgtll 290
                 +  ++  ++  +ll + + + +   +++  + l + l +ll   l  y   +  ++   ++   t ++  t+ ++  ++lS+l+F+npltl+  +g+++
  KOO24092.1 243 IVALVA-IVPLALLAEGRTIVAGTLATVekVGLQRFLRMLLYSGLSHYTYNECAFLALDSIHPVTHAVANTIKRVAVIVLSVLYFRNPLTLTGALGSAI 340
                 222222.333333333333333344444334456677788888888888888899999999999*********************************** PP

         UAA 291 Vflglllysy 300
                  ++g++lys 
  KOO24092.1 341 AIVGVMLYSI 350
                 *******986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (380 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       618  (0.0344693); expected 358.6 (0.02)
Passed bias filter:                      267  (0.0148921); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.49u 0.24s 00:00:00.73 Elapsed: 00:00:00.42
# Mc/sec: 2702.64
//
Query:       KOO24093.1  [L=258]
Description: protein kinase domain containing protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.4e-49  167.6   0.0      4e-49  167.3   0.0    1.0  1  Pkinase         Protein kinase domain
    5.5e-28   97.9   0.0    7.1e-28   97.6   0.0    1.0  1  Pkinase_Tyr     Protein tyrosine kinase
    2.2e-07   30.5   0.0    6.2e-07   29.0   0.0    1.7  2  Kinase-like     Kinase-like
    0.00022   20.1   0.0    0.00032   19.6   0.0    1.1  1  Pkinase_fungal  Fungal protein kinase
     0.0052   16.7   0.0       0.01   15.7   0.0    1.5  1  APH             Phosphotransferase enzyme family
     0.0072   15.7   0.0      0.011   15.0   0.0    1.2  1  Kdo             Lipopolysaccharide kinase (Kdo/WaaP) family
  ------ inclusion threshold ------
       0.02   14.5   0.0      0.026   14.2   0.0    1.3  1  FTA2            Kinetochore Sim4 complex subunit FTA2
      0.046   12.7   0.0      0.065   12.2   0.0    1.2  1  Haspin_kinase   Haspin like kinase domain


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  167.3   0.0   1.8e-52     4e-49      20     258 ..       3     233 ..       1     236 [. 0.91

  Alignments for each domain:
  == domain 1  score: 167.3 bits;  conditional E-value: 1.8e-52
                 ETTTTEEEEEEEEECHCHCHHHH..HHHHHHHHHHHHHSCTTB--EEEEEEESSEEEEEEE--TTEBHHHHHHHHSS.--HHHHHHHHHHHHHHHHHHH CS
     Pkinase  20 eketgkivAvKkikkekakkkke..kkvlrEikilkklkhpnivrlyevfeekdelylvleyveggeladllerkgs.lseeeakkiakqilegleylH 115
                 + ++g+i+AvK+ ++++a+ +k   k++l+E ++  +++h+ni+    + ++     l +ey++gg+l+ ++++ g  l+e+ea ++++qi+ ++ ylH
  KOO24093.1   3 HGRDGQIIAVKTYDHKEARAEKAvaKHMLNEERLAGRIQHENIIAPTLARRKIGCTELEMEYAPGGTLEAHVKKLGRpLTEAEAANYFRQIVDAVVYLH 101
                 66899**************999999**********************9999999999****************77777********************* PP

                 HTTEE-SS-SGGGEEEETTTEEEE-SGTTSEESSSSCSBCTTTSCGGGS-HHHHTTSCB.SHHHHHHHHHHHHHHHHHS.S-STTTSSHHHHHHHHHHT CS
     Pkinase 116 skgiiHrDlKpeNiLidekgelKitDFGlakelessskltsfvgtseYlAPEvlkeney.skkvDvWslGvilyelltg.kppfsgekgkekvekeldq 212
                  +gi HrD+K eN+ +d +g+ +++DFG a+e+  ++ l+s+ gt+ Y+APEv +++ + + ++DvW+lGv+ly+ll+g   pf+g++ +e     l++
  KOO24093.1 102 GEGITHRDIKLENVVLDAEGNARLVDFGAAREVGADTFLMSVQGTPAYMAPEVATQRAHkGGPADVWALGVLLYNLLSGgAYPFWGKNMDE-----LRR 195
                 ******************************************************666665*****************963789**555554.....332 PP

                 HHHHHHHCTSHH...HHHTTS-HHHHHHHHHHT-SSGCCSTTHHHH CS
     Pkinase 213 lekilkilgetkeklpeaseiseeakdllkkllkkdpkkRltaeel 258
                         + t    + +s++s+ +++ll+kll+k   +R++a+e 
  KOO24093.1 196 --------NITAAPPRIPSHLSPACRELLEKLLNKSSANRISAAER 233
                 ........122346778999**********************9885 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   97.6   0.0   3.2e-31   7.1e-28      28     252 ..       7     230 ..       2     235 .. 0.87

  Alignments for each domain:
  == domain 1  score: 97.6 bits;  conditional E-value: 3.2e-31
                  EEEEEEEEESTTSSHHH...HHHHHHHHHHHHTS-BTTB--EEEEEESSSSEEEEEE--TTEBHHHHHHHTCTTTSBHHHHHHHHHHHHHHHHHHHHT CS
  Pkinase_Tyr  28 evkVavKtlkeeateee...keelleeakimkklkhpnivkllgvctkeepllivteyvkgGdLlkfLrkkekekltlkdllsfalqvAkGmeyLesk 122
                   + +avKt +++  + e    +++l+e ++  +++h+ni++ + +  k + + + +ey++gG+L+ +++k   ++lt  +  ++  q+ +++ yL+ +
   KOO24093.1   7 GQIIAVKTYDHKEARAEkavAKHMLNEERLAGRIQHENIIAPTLARRKIGCTELEMEYAPGGTLEAHVKKL-GRPLTEAEAANYFRQIVDAVVYLHGE 103
                  5679*****65444433245789********************99999999*******************9.************************** PP

                  TEEEST-SGGGEEEEETTEEEE-STTTHEETTTSSEEEETTSSTSGGGGS-HHHHHHSEEE.HHHHHHHHHHHHHHHHTTSSGTTTTSHHHHHHHHHH CS
  Pkinase_Tyr 123 klvHrdlaarNvLlsenkvvkisDfGLardiekddeyvkkeeaklpvkWmapEslkekkft.sksDvWsfGvllwEiftlgespypglkneevleklk 219
                   + Hrd+   Nv+l+ +  +++ DfG ar++  d       + +    +mapE+ +++  +   +DvW+ Gvll+ +++ g+ p++g +  e+ ++++
   KOO24093.1 104 GITHRDIKLENVVLDAEGNARLVDFGAAREVGADTF---LMSVQGTPAYMAPEVATQRAHKgGPADVWALGVLLYNLLSGGAYPFWGKNMDELRRNIT 198
                  *******************************44433...344556779******9998865268***********************99999888886 PP

                  TTEES-BBTTSBHHHHHHHHHHT-SSGGGS--H CS
  Pkinase_Tyr 220 egkrlekpekcpeelyelmkkcweedpeeRptf 252
                  +    + p++ +++  el++k ++++ ++R + 
   KOO24093.1 199 A-APPRIPSHLSPACRELLEKLLNKSSANRISA 230
                  5.567889999***********99999999875 PP

>> Kinase-like  Kinase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.1      0.62   1.4e+03     137     167 ..      19      47 ..       9      55 .. 0.76
   2 !   29.0   0.0   2.8e-10   6.2e-07     151     287 ..      91     226 ..      68     227 .. 0.74

  Alignments for each domain:
  == domain 1  score: -1.7 bits;  conditional E-value: 0.62
  Kinase-like 137 thkkletiarlllTlqlirlaanLqakglvh 167
                  +++ ++ +a+++l     rla  +q++ ++ 
   KOO24093.1  19 EARAEKAVAKHMLN--EERLAGRIQHENIIA 47 
                  46778889999994..479999999999875 PP

  == domain 2  score: 29.0 bits;  conditional E-value: 2.8e-10
  Kinase-like 151 lqlirlaanLqakglvhgkftvdnllldekgglmlggftaLvragtkvvlseve..kgfaPpEllgsrggytrknktkmthkldaWqlGlviyriwcl 246
                   q++  + +L+ +g+ h +++ +n++ld +g   l +f+a + +g+   l +v+   ++  pE+  +r+            + d+W+lG+  y + + 
   KOO24093.1  91 RQIVDAVVYLHGEGITHRDIKLENVVLDAEGNARLVDFGAAREVGADTFLMSVQgtPAYMAPEVATQRAH--------KGGPADVWALGVLLYNLLSG 180
                  588999*******************************************977776789******999554........67799**********98775 PP

  Kinase-like 247 .klPl.tlateeakeewkfklck...kipekvkaLlkkfLqlsqed 287
                     P+ ++  +e   +    + +   + + + + Ll+k+L+ s+ +
   KOO24093.1 181 gAYPFwGKNMDELRRNITAAPPRipsHLSPACRELLEKLLNKSSAN 226
                  1446534555555555322221111233444566666666666655 PP

>> Pkinase_fungal  Fungal protein kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.6   0.0   1.4e-07   0.00032     293     392 ..      75     161 ..      67     166 .. 0.82

  Alignments for each domain:
  == domain 1  score: 19.6 bits;  conditional E-value: 1.4e-07
  Pkinase_fungal 293 spvGkpiekaespkellealrDaIkghrsLflkagiLHrDiSenNilitdskkegerkglLiDLDlakelsddssesgarertGTleFmaievlk 387
                     +  G+p+++ae      + +r+ + +   L+   gi HrDi  +N+++      +e +  L+D+  a e++ d+         GT+++ma ev  
      KOO24093.1  75 KKLGRPLTEAEAA----NYFRQIVDAVVYLH-GEGITHRDIKLENVVLD-----AEGNARLVDFGAAREVGADTF---LMSVQGTPAYMAPEVAT 156
                     5667777776654....45677777778899.9***************9.....788999***********7443...35699**********99 PP

  Pkinase_fungal 388 geeHs 392
                     +  H+
      KOO24093.1 157 QRAHK 161
                     87786 PP

>> APH  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.0   4.7e-06      0.01     154     196 ..      88     131 ..      52     133 .. 0.70

  Alignments for each domain:
  == domain 1  score: 15.7 bits;  conditional E-value: 4.7e-06
                 HHHHHH--S...SS-EEEE-SS-SGGGEEEC...TTEEEEE---TT- CS
         APH 154 aalaallpg...elptvllHgDlhpgNllvd.pddgrvtGviDfeda 196
                 + +++ +++      ++++H+D+++ N+++d +++ r   ++Df+ a
  KOO24093.1  88 NYFRQIVDAvvyLHGEGITHRDIKLENVVLDaEGNAR---LVDFGAA 131
                 44444444455567789**************555555...8***977 PP

>> Kdo  Lipopolysaccharide kinase (Kdo/WaaP) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.0   5.1e-06     0.011     105     169 ..      70     131 ..      63     137 .. 0.85

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 5.1e-06
         Kdo 105 Ledllakwae.laeelkrallkavgrliaklhragvnHadlyaknillqqeeeeeaeiwliDldka 169
                 Le++++k  + l e+  ++ ++++  ++  lh  g+ H+d+   n+ l++e+    ++ l+D+  a
  KOO24093.1  70 LEAHVKKLGRpLTEAEAANYFRQIVDAVVYLHGEGITHRDIKLENVVLDAEG----NARLVDFGAA 131
                 5666666555577778888999*****************************9....9999999765 PP

>> FTA2  Kinetochore Sim4 complex subunit FTA2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   0.0   1.2e-05     0.026     158     214 ..      71     131 ..      12     132 .. 0.73

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 1.2e-05
        FTA2 158 raIVKelellkeqeelevsqlpkllrdlkklhklgIvvrDlkeenyi.....dgkLvDlsaa 214
                  a VK+       e    ++++++++ +  lh +gI +rD+k en++     + +LvD++aa
  KOO24093.1  71 EAHVKK-LGRPLTEAEAANYFRQIVDAVVYLHGEGITHRDIKLENVVldaegNARLVDFGAA 131
                 556666.3334445556789*************************9877766789****987 PP

>> Haspin_kinase  Haspin like kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   2.9e-05     0.065     229     256 ..     106     133 ..      75     143 .. 0.89

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 2.9e-05
  Haspin_kinase 229 EHRdLhldniLvdknlnvtlidlklsRl 256
                     HRd++l+n+ +d+++n  l+d+  +R 
     KOO24093.1 106 THRDIKLENVVLDAEGNARLVDFGAARE 133
                    5***********************9995 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (258 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       457  (0.0254894); expected 358.6 (0.02)
Passed bias filter:                      407  (0.0227007); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.41u 0.30s 00:00:00.71 Elapsed: 00:00:00.42
# Mc/sec: 1860.39
//
Query:       KOO24094.1  [L=377]
Description: tpr-like protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.1e-64  213.5  14.1    7.7e-11   42.0   0.0    9.4 10  PPR_2            PPR repeat family
    2.5e-50  168.4   0.0    5.2e-12   45.7   0.0    6.7  7  PPR_3            Pentatricopeptide repeat domain
      7e-48  157.6   7.4    3.2e-06   27.0   0.0    9.4  9  PPR              PPR repeat
    1.4e-29  101.5   9.0    1.1e-05   25.0   0.0   10.2 10  PPR_1            PPR repeat
    1.6e-24   86.5   5.0      1e-11   44.6   0.3    4.2  4  PPR_long         Pentacotripeptide-repeat region of PRORP
     0.0053   17.5   7.8         14    6.8   0.0    6.2  6  TPR_14           Tetratricopeptide repeat
  ------ inclusion threshold ------
       0.03   14.0   0.7        2.8    7.7   0.1    3.5  4  Urocanase_N      Urocanase N-terminal domain
      0.066   12.8   0.2       0.53    9.8   0.1    2.1  2  ThiI             Thiamine biosynthesis protein (ThiI)
       0.08   12.9   4.2         14    5.7   0.1    3.3  4  DUF3322          Uncharacterized protein conserved in bacteri
      0.093   12.5   1.7         11    5.8   0.3    2.6  2  Haem_oxygenas_2  Iron-containing redox enzyme
       0.13   11.9   0.0         14    5.2   0.0    2.7  3  ATP-grasp_4      ATP-grasp domain
       0.14   12.1   0.1        6.1    6.9   0.0    3.2  5  COX5A            Cytochrome c oxidase subunit Va
       0.15   11.1   0.2         34    3.4   0.0    2.9  3  Flu_B_NS1        Influenza B non-structural protein (NS1)


Domain annotation for each model (and alignments):
>> PPR_2  PPR repeat family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.0       3.6   4.9e+03       6      22 ..      12      28 ..      10      35 .. 0.72
   2 !   15.1   0.1   1.4e-05      0.02       6      47 ..      49      89 ..      45      91 .. 0.86
   3 !   36.5   0.0   2.9e-12     4e-09       2      50 .]      79     127 ..      78     127 .. 0.97
   4 !   42.0   0.0   5.6e-14   7.7e-11       1      49 [.     113     161 ..     113     162 .. 0.97
   5 !   38.4   0.1   7.5e-13     1e-09       2      49 ..     149     196 ..     148     197 .. 0.96
   6 !   33.5   0.0   2.6e-11   3.7e-08       4      48 ..     186     230 ..     186     232 .. 0.97
   7 !   35.1   0.0     8e-12   1.1e-08       1      48 [.     218     265 ..     218     267 .. 0.96
   8 !   25.9   0.0   6.1e-09   8.5e-06       4      48 ..     256     300 ..     256     302 .. 0.96
   9 !   24.7   0.0   1.4e-08     2e-05       1      50 []     288     337 ..     288     337 .. 0.98
  10 !   21.6   0.0   1.3e-07   0.00018       2      37 ..     324     359 ..     323     361 .. 0.94

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 3.6
       PPR_2  6 yNtlIsglckkgkveeA 22
                ++tl++ + k+ k++ A
  KOO24094.1 12 FTTLLHTFKKRQKWRVA 28
                67788777777777655 PP

  == domain 2  score: 15.1 bits;  conditional E-value: 1.4e-05
       PPR_2  6 yNtlIsglckkgkveeAfklfneMkkrglePnsyTysilikg 47
                yN l+++ c k++++ A++++  M+  g++ n++T+++ +++
  KOO24094.1 49 YNLLMAA-CVKRAPKRALQMLARMRVLGISTNVVTHNTAMSA 89
                8888855.566899***********************98765 PP

  == domain 3  score: 36.5 bits;  conditional E-value: 2.9e-12
       PPR_2   2 dvvtyNtlIsglckkgkveeAfklfneMkkrglePnsyTysilikglck 50 
                 +vvt Nt +s+ +   +++ A+k+f+eM++ g+ P++++y++ i+++++
  KOO24094.1  79 NVVTHNTAMSAALALDDPRGALKMFEEMRSLGIAPTTISYNTAISACAR 127
                 9*********************************************986 PP

  == domain 4  score: 42.0 bits;  conditional E-value: 5.6e-14
       PPR_2   1 pdvvtyNtlIsglckkgkveeAfklfneMkkrglePnsyTysilikglc 49 
                 p +++yNt Is++++  + e A++lf +M+  gle n++Ty+ li++++
  KOO24094.1 113 PTTISYNTAISACARCVDGELALSLFRDMEASGLERNTVTYTGLIHACA 161
                 789********************************************97 PP

  == domain 5  score: 38.4 bits;  conditional E-value: 7.5e-13
       PPR_2   2 dvvtyNtlIsglckkgkveeAfklfneMkkrglePnsyTysilikglc 49 
                 ++vty+ lI+++++  ++++A+ lf +M   g+e n +Tys+ i+++ 
  KOO24094.1 149 NTVTYTGLIHACAESMQLDKAMALFTYMDVVGIERNLVTYSVAINACT 196
                 9*********************************************75 PP

  == domain 6  score: 33.5 bits;  conditional E-value: 2.6e-11
       PPR_2   4 vtyNtlIsglckkgkveeAfklfneMkkrglePnsyTysilikgl 48 
                 vty + I+++ ++g++e  ++l++eM ++g++P+++ ++  i+++
  KOO24094.1 186 VTYSVAINACTRNGQWELGLQLLHEMARKGIQPDTVVFNAAITAC 230
                 8*****************************************996 PP

  == domain 7  score: 35.1 bits;  conditional E-value: 8e-12
       PPR_2   1 pdvvtyNtlIsglckkgkveeAfklfneMkkrglePnsyTysilikgl 48 
                 pd+v++N+ I+++ k  +++ A++l+ +M++ gl+P+++Ty   i+++
  KOO24094.1 218 PDTVVFNAAITACEKGHAWDTALRLMAQMRQMGLKPTAVTYGAAISAC 265
                 9******************************************99996 PP

  == domain 8  score: 25.9 bits;  conditional E-value: 6.1e-09
       PPR_2   4 vtyNtlIsglckkgkveeAfklfneMkkrglePnsyTysilikgl 48 
                 vty + Is++ k +++++A+ l+ +M + +++Pn++ ys  i+++
  KOO24094.1 256 VTYGAAISACQKGKQWQKALALLAQMSEEKVKPNTIVYSAAISAC 300
                 89****************************************996 PP

  == domain 9  score: 24.7 bits;  conditional E-value: 1.4e-08
       PPR_2   1 pdvvtyNtlIsglckkgkveeAfklfneMkkrglePnsyTysilikglck 50 
                 p++++y + Is++  +g++e A+ l+++M    ++ n++ y+  i+++++
  KOO24094.1 288 PNTIVYSAAISACGAAGEWEAALGLLQQMDTLRIPRNTICYNAAIQACAN 337
                 9**********************************************985 PP

  == domain 10  score: 21.6 bits;  conditional E-value: 1.3e-07
       PPR_2   2 dvvtyNtlIsglckkgkveeAfklfneMkkrglePn 37 
                 ++++yN+ I+++++  +++ A++lf+ Mk  g+e +
  KOO24094.1 324 NTICYNAAIQACANGLAWQHALSLFDSMKAEGVERD 359
                 99******************************9866 PP

>> PPR_3  Pentatricopeptide repeat domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.2   0.0     0.008        11      16      63 .]      10      59 ..       5      59 .. 0.84
   2 !   16.1   0.1   6.2e-06    0.0086      17      59 ..      48      89 ..      41      92 .. 0.84
   3 !   33.1   0.0   3.2e-11   4.4e-08       4      60 ..      69     125 ..      66     127 .. 0.94
   4 !   45.7   0.0   3.8e-15   5.2e-12       1      61 [.     136     196 ..     136     198 .. 0.97
   5 !   43.1   0.0   2.4e-14   3.3e-11       2      60 ..     207     265 ..     206     268 .. 0.97
   6 !   21.5   0.0   1.3e-07   0.00018      22      61 ..     262     301 ..     261     303 .. 0.93
   7 !   12.2   0.0    0.0001      0.14       2      47 ..     312     357 ..     311     359 .. 0.96

  Alignments for each domain:
  == domain 1  score: 6.2 bits;  conditional E-value: 0.008
       PPR_3 16 vtYthLLtayanagnkklalevlermkkkgikP..tvvtyNailgviggr 63
                + +t+LL+ +++ ++ + a+   +  +  g++   t   yN ++ ++++r
  KOO24094.1 10 NNFTTLLHTFKKRQKWRVASLLADWAETPGCSVrlTATHYNLLMAACVKR 59
                6899*****999999999999999999999865226678*****999986 PP

  == domain 2  score: 16.1 bits;  conditional E-value: 6.2e-06
       PPR_3 17 tYthLLtayanagnkklalevlermkkkgikPtvvtyNailgv 59
                 Y+ LL a+ + +  k+al+ l+rm+  gi+ +vvt N  +++
  KOO24094.1 48 HYN-LLMAACVKRAPKRALQMLARMRVLGISTNVVTHNTAMSA 89
                455.6666688999************************98876 PP

  == domain 3  score: 33.1 bits;  conditional E-value: 3.2e-11
       PPR_3   4 remerkgikldvvtYthLLtayanagnkklalevlermkkkgikPtvvtyNailgvi 60 
                   m   gi  +vvt ++ ++a+    + + al+ +e+m+  gi+Pt ++yN  ++++
  KOO24094.1  69 ARMRVLGISTNVVTHNTAMSAALALDDPRGALKMFEEMRSLGIAPTTISYNTAISAC 125
                 568889*************************************************99 PP

  == domain 4  score: 45.7 bits;  conditional E-value: 3.8e-15
       PPR_3   1 silremerkgikldvvtYthLLtayanagnkklalevlermkkkgikPtvvtyNailgvig 61 
                 s++r+me+ g++ + vtYt L++a+a    ++ a+  + +m  +gi+ ++vty++ ++++ 
  KOO24094.1 136 SLFRDMEASGLERNTVTYTGLIHACAESMQLDKAMALFTYMDVVGIERNLVTYSVAINACT 196
                 699********************************************************95 PP

  == domain 5  score: 43.1 bits;  conditional E-value: 2.4e-14
       PPR_3   2 ilremerkgikldvvtYthLLtayanagnkklalevlermkkkgikPtvvtyNailgvi 60 
                 +l+em rkgi++d v +++ +ta+ +    + al+ +++m++ g+kPt vty a ++++
  KOO24094.1 207 LLHEMARKGIQPDTVVFNAAITACEKGHAWDTALRLMAQMRQMGLKPTAVTYGAAISAC 265
                 89*******************************************************99 PP

  == domain 6  score: 21.5 bits;  conditional E-value: 1.3e-07
       PPR_3  22 LtayanagnkklalevlermkkkgikPtvvtyNailgvig 61 
                 ++a+ + +  + al  l++m ++++kP+ + y+a ++++g
  KOO24094.1 262 ISACQKGKQWQKALALLAQMSEEKVKPNTIVYSAAISACG 301
                 67888889999****************************8 PP

  == domain 7  score: 12.2 bits;  conditional E-value: 0.0001
       PPR_3   2 ilremerkgikldvvtYthLLtayanagnkklalevlermkkkgik 47 
                 +l+ m+   i  + + Y++ ++a+an    + al  ++ mk +g++
  KOO24094.1 312 LLQQMDTLRIPRNTICYNAAIQACANGLAWQHALSLFDSMKAEGVE 357
                 78999999***********************************986 PP

>> PPR  PPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.4   0.1     0.009        12       3      31 .]      49      76 ..      47      76 .. 0.80
   2 !   17.3   0.0   2.9e-06    0.0041       1      31 []      81     111 ..      81     111 .. 0.96
   3 !   23.2   0.0   3.7e-08   5.1e-05       1      31 []     116     146 ..     116     146 .. 0.95
   4 !   18.6   0.1   1.1e-06    0.0016       1      28 [.     151     178 ..     151     181 .. 0.91
   5 !   27.0   0.0   2.3e-09   3.2e-06       1      31 []     186     216 ..     186     216 .. 0.98
   6 !   10.1   0.0   0.00058       0.8       1      31 []     221     251 ..     221     251 .. 0.96
   7 !   14.5   0.0   2.3e-05     0.032       1      30 [.     256     285 ..     256     286 .. 0.95
   8 !   17.7   0.0   2.2e-06     0.003       2      27 ..     292     317 ..     291     321 .. 0.91
   9 !   17.5   0.0   2.4e-06    0.0034       2      31 .]     327     356 ..     326     356 .. 0.96

  Alignments for each domain:
  == domain 1  score: 6.4 bits;  conditional E-value: 0.009
         PPR  3 ynslIsgycknGkleeAlelfkeMkekGi 31
                yn l+ + c ++ ++ Al+++ +M+  Gi
  KOO24094.1 49 YNLLMAA-CVKRAPKRALQMLARMRVLGI 76
                5555555.99999999*****99999886 PP

  == domain 2  score: 17.3 bits;  conditional E-value: 2.9e-06
         PPR   1 vtynslIsgycknGkleeAlelfkeMkekGi 31 
                 vt n+ +s+     +++ Al++f+eM++ Gi
  KOO24094.1  81 VTHNTAMSAALALDDPRGALKMFEEMRSLGI 111
                 799*************************997 PP

  == domain 3  score: 23.2 bits;  conditional E-value: 3.7e-08
         PPR   1 vtynslIsgycknGkleeAlelfkeMkekGi 31 
                 ++yn+ Is+++++ + e Al+lf++M+ +G+
  KOO24094.1 116 ISYNTAISACARCVDGELALSLFRDMEASGL 146
                 69*************************9995 PP

  == domain 4  score: 18.6 bits;  conditional E-value: 1.1e-06
         PPR   1 vtynslIsgycknGkleeAlelfkeMke 28 
                 vty+ lI++++ + +l++A+ lf  M  
  KOO24094.1 151 VTYTGLIHACAESMQLDKAMALFTYMDV 178
                 8**********************99965 PP

  == domain 5  score: 27.0 bits;  conditional E-value: 2.3e-09
         PPR   1 vtynslIsgycknGkleeAlelfkeMkekGi 31 
                 vty++ I+++ +nG++e  l+l++eM +kGi
  KOO24094.1 186 VTYSVAINACTRNGQWELGLQLLHEMARKGI 216
                 8****************************97 PP

  == domain 6  score: 10.1 bits;  conditional E-value: 0.00058
         PPR   1 vtynslIsgycknGkleeAlelfkeMkekGi 31 
                 v++n+ I ++ k   ++ Al+l+ +M+++G+
  KOO24094.1 221 VVFNAAITACEKGHAWDTALRLMAQMRQMGL 251
                 78**************************996 PP

  == domain 7  score: 14.5 bits;  conditional E-value: 2.3e-05
         PPR   1 vtynslIsgycknGkleeAlelfkeMkekG 30 
                 vty + Is++ k  ++++Al l+ +M e+ 
  KOO24094.1 256 VTYGAAISACQKGKQWQKALALLAQMSEEK 285
                 8*************************9976 PP

  == domain 8  score: 17.7 bits;  conditional E-value: 2.2e-06
         PPR   2 tynslIsgycknGkleeAlelfkeMk 27 
                 +y++ Is+++ +G++e Al l+++M 
  KOO24094.1 292 VYSAAISACGAAGEWEAALGLLQQMD 317
                 7************************6 PP

  == domain 9  score: 17.5 bits;  conditional E-value: 2.4e-06
         PPR   2 tynslIsgycknGkleeAlelfkeMkekGi 31 
                 +yn+ I++++    ++ Al+lf+ Mk +G+
  KOO24094.1 327 CYNAAIQACANGLAWQHALSLFDSMKAEGV 356
                 8**************************997 PP

>> PPR_1  PPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.2       4.9   6.7e+03      25      34 .]      63      72 ..      62      72 .. 0.86
   2 ?    3.0   0.0     0.061        84       2      12 ..      75      85 ..      74      89 .. 0.86
   3 ?    2.9   0.1     0.064        88      26      34 .]      99     107 ..      95     107 .. 0.90
   4 !   14.1   0.0   2.1e-05     0.029       2      34 .]     110     142 ..     109     142 .. 0.96
   5 !   25.0   0.0     8e-09   1.1e-05       2      33 ..     145     176 ..     144     177 .. 0.96
   6 !   16.0   0.0   5.4e-06    0.0074       2      33 ..     180     211 ..     179     212 .. 0.97
   7 !    8.4   0.0    0.0013       1.8       1      33 [.     214     246 ..     214     247 .. 0.74
   8 !    9.8   0.0   0.00047      0.65       1      33 [.     249     281 ..     249     282 .. 0.83
   9 !   15.3   0.0   8.9e-06     0.012       3      33 ..     286     316 ..     284     317 .. 0.96
  10 ?    1.2   0.1      0.22   3.1e+02       6      33 ..     324     351 ..     320     352 .. 0.56

  Alignments for each domain:
  == domain 1  score: -3.1 bits;  conditional E-value: 4.9
                HHHHHHHHHH CS
       PPR_1 25 eAfelfdeMe 34
                +A++++ +M+
  KOO24094.1 63 RALQMLARMR 72
                89****9996 PP

  == domain 2  score: 3.0 bits;  conditional E-value: 0.061
                S----HHHHHH CS
       PPR_1  2 GlkPdvvTYNt 12
                G++ +vvT Nt
  KOO24094.1 75 GISTNVVTHNT 85
                8889******9 PP

  == domain 3  score: 2.9 bits;  conditional E-value: 0.064
                 HHHHHHHHH CS
       PPR_1  26 AfelfdeMe 34 
                 A+++f+eM+
  KOO24094.1  99 ALKMFEEMR 107
                 99******7 PP

  == domain 4  score: 14.1 bits;  conditional E-value: 2.1e-05
                 S----HHHHHHHHHHHHHTS-HHHHHHHHHHHH CS
       PPR_1   2 GlkPdvvTYNtLIdGlCkaGrvdeAfelfdeMe 34 
                 G+ P++++YNt I+++ ++ + + A+ lf++Me
  KOO24094.1 110 GIAPTTISYNTAISACARCVDGELALSLFRDME 142
                 999*****************************7 PP

  == domain 5  score: 25.0 bits;  conditional E-value: 8e-09
                 S----HHHHHHHHHHHHHTS-HHHHHHHHHHH CS
       PPR_1   2 GlkPdvvTYNtLIdGlCkaGrvdeAfelfdeM 33 
                 Gl+ ++vTY+ LI+++     +d+A+ lf  M
  KOO24094.1 145 GLERNTVTYTGLIHACAESMQLDKAMALFTYM 176
                 99***************************999 PP

  == domain 6  score: 16.0 bits;  conditional E-value: 5.4e-06
                 S----HHHHHHHHHHHHHTS-HHHHHHHHHHH CS
       PPR_1   2 GlkPdvvTYNtLIdGlCkaGrvdeAfelfdeM 33 
                 G++ + vTY+  I+++ ++G  +  ++l+ eM
  KOO24094.1 180 GIERNLVTYSVAINACTRNGQWELGLQLLHEM 211
                 899***************************** PP

  == domain 7  score: 8.4 bits;  conditional E-value: 0.0013
                 SS----HHHHHHHHHHHHHTS-.HHHHHHHHHHH CS
       PPR_1   1 kGlkPdvvTYNtLIdGlCkaGr.vdeAfelfdeM 33 
                 kG++Pd+v +N  I + C +G+  d A++l+ +M
  KOO24094.1 214 KGIQPDTVVFNAAITA-CEKGHaWDTALRLMAQM 246
                 79*********99988.44444267777777777 PP

  == domain 8  score: 9.8 bits;  conditional E-value: 0.00047
                 SS----HHHHHHHHHHHHHTS-HHHHHHHHHHH CS
       PPR_1   1 kGlkPdvvTYNtLIdGlCkaGrvdeAfelfdeM 33 
                 +GlkP++vTY   I+++ k     +A+ l+ +M
  KOO24094.1 249 MGLKPTAVTYGAAISACQKGKQWQKALALLAQM 281
                 69************9977766788888888887 PP

  == domain 9  score: 15.3 bits;  conditional E-value: 8.9e-06
                 ----HHHHHHHHHHHHHTS-HHHHHHHHHHH CS
       PPR_1   3 lkPdvvTYNtLIdGlCkaGrvdeAfelfdeM 33 
                 +kP+++ Y+  I+++  aG+ + A+ l+ +M
  KOO24094.1 286 VKPNTIVYSAAISACGAAGEWEAALGLLQQM 316
                 89***************************** PP

  == domain 10  score: 1.2 bits;  conditional E-value: 0.22
                 -HHHHHHHHHHHHHTS-HHHHHHHHHHH CS
       PPR_1   6 dvvTYNtLIdGlCkaGrvdeAfelfdeM 33 
                 ++++YN  I ++        A+ lfd M
  KOO24094.1 324 NTICYNAAIQACANGLAWQHALSLFDSM 351
                 7777777776633222234466666666 PP

>> PPR_long  Pentacotripeptide-repeat region of PRORP
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.3   0.2   2.5e-08   3.5e-05      41     159 ..      41     149 ..       9     156 .. 0.87
   2 !   34.5   0.0   9.3e-12   1.3e-08      27     158 ..      96     218 ..      95     219 .. 0.88
   3 !   44.6   0.3   7.3e-15     1e-11      19     185 ..     158     315 ..     157     320 .. 0.93
   4 !    5.7   0.0     0.006       8.2      14      43 ..     328     357 ..     319     366 .. 0.89

  Alignments for each domain:
  == domain 1  score: 23.3 bits;  conditional E-value: 2.5e-08
                 SS---HHHHHHHHHHHHHC.HCSTTTHHHHHHHHHHHHHHHHHTT----HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-S---HHHHHHHHHHHHHTT CS
    PPR_long  41 gvrlaqyhynvllylcskaeaaseskknkalargfevfeamkakgvspnEatvtalarlaaakedgdlafelvkemekagvsPrLRsyaPaLaayckag 139
                 +vrl++ hyn l+  c+k +           +r++++ ++m+  g+s+n  t  + +  a a +d   a ++ +em++ g++P   sy+ a+ a  +  
  KOO24094.1  41 SVRLTATHYNLLMAACVKRA----------PKRALQMLARMRVLGISTNVVTHNTAMSAALALDDPRGALKMFEEMRSLGIAPTTISYNTAISACARCV 129
                 59**************7762..........357899*************98888888889999************************************ PP

                 -HHHHHHHHHHHHHCT---- CS
    PPR_long 140 dadkaleveehlkasgvele 159
                 d + al     ++asg+e +
  KOO24094.1 130 DGELALSLFRDMEASGLERN 149
                 ***************99866 PP

  == domain 2  score: 34.5 bits;  conditional E-value: 9.3e-12
                 HHHHHHHHHHHHHSSS---HHHHHHHHHHHHHC.HCSTTTHHHHHHHHHHHHHHHHHTT----HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-S---H CS
    PPR_long  27 aaaAlelydkavaegvrlaqyhynvllylcskaeaaseskknkalargfevfeamkakgvspnEatvtalarlaaakedgdlafelvkemekagvsPrL 125
                  ++Al++++++ + g++ ++ +yn+ +  c++  +          + ++  f++m+a+g + n  t+t l++ +a + + d+a +l + m  +g++  L
  KOO24094.1  96 PRGALKMFEEMRSLGIAPTTISYNTAISACARCVDG---------ELALSLFRDMEASGLERNTVTYTGLIHACAESMQLDKAMALFTYMDVVGIERNL 185
                 578999999999999999999999999999888544.........246789999999999999999999999999999999999999999999999999 PP

                 HHHHHHHHHHHHTT-HHHHHHHHHHHHHCT--- CS
    PPR_long 126 RsyaPaLaayckagdadkaleveehlkasgvel 158
                  +y+ a+ a ++ g+ + +l+  + ++ +g+++
  KOO24094.1 186 VTYSVAINACTRNGQWELGLQLLHEMARKGIQP 218
                 999999999999999999999999999999987 PP

  == domain 3  score: 44.6 bits;  conditional E-value: 7.3e-15
                 HHHHHHT-HHHHHHHHHHHHHSSS---HHHHHHHHHHHHHC.HCSTTTHHHHHHHHHHHHHHHHHTT----HHHHHHHHHHHHHTT-HHHHHHHHHHHH CS
    PPR_long  19 dkCskekDaaaAlelydkavaegvrlaqyhynvllylcskaeaaseskknkalargfevfeamkakgvspnEatvtalarlaaakedgdlafelvkeme 117
                 + C+ +  + +A++l+  +   g++ +  +y+v ++ c++           + + g++  ++m  kg++p   ++ a +  + + +  d+a +l+++m+
  KOO24094.1 158 HACAESMQLDKAMALFTYMDVVGIERNLVTYSVAINACTRNG---------QWELGLQLLHEMARKGIQPDTVVFNAAITACEKGHAWDTALRLMAQMR 247
                 68************************************6653.........25689******************************************* PP

                 HH-S---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHCT----HHHHHHHHHHHHHTT-HHHHHHHHHH CS
    PPR_long 118 kagvsPrLRsyaPaLaayckagdadkaleveehlkasgveleEaelaaLLkvsakagredkvYelLhk 185
                 ++g++P   +y+ a+ a  k ++ +kal+  ++++  +v+++   ++a + ++ +ag+ +    lL++
  KOO24094.1 248 QMGLKPTAVTYGAAISACQKGKQWQKALALLAQMSEEKVKPNTIVYSAAISACGAAGEWEAALGLLQQ 315
                 ***********************************************999999999987766666655 PP

  == domain 4  score: 5.7 bits;  conditional E-value: 0.006
                 HHHHHHHHHHHT-HHHHHHHHHHHHHSSS- CS
    PPR_long  14 lrrqldkCskekDaaaAlelydkavaegvr 43 
                 ++ +++ C+     ++Al+l+d+++aegv+
  KOO24094.1 328 YNAAIQACANGLAWQHALSLFDSMKAEGVE 357
                 667899********************9985 PP

>> TPR_14  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   0.1       2.5   3.5e+03      17      27 ..      61      71 ..      51      75 .. 0.70
   2 ?    6.8   0.0      0.01        14       9      30 ..      88     109 ..      83     123 .. 0.84
   3 ?   -0.6   0.0       2.5   3.4e+03       7      24 ..     156     173 ..     152     174 .. 0.84
   4 ?    3.6   0.0      0.11   1.6e+02       8      34 ..     192     220 ..     187     230 .. 0.77
   5 ?    0.6   0.1      0.98   1.4e+03       7      28 ..     261     282 ..     253     288 .. 0.76
   6 ?    3.6   0.1      0.11   1.5e+02       6      27 ..     295     316 ..     291     323 .. 0.84

  Alignments for each domain:
  == domain 1  score: -0.6 bits;  conditional E-value: 2.5
      TPR_14 17 pdeAiallrra 27
                p++A+++l r+
  KOO24094.1 61 PKRALQMLARM 71
                66777777665 PP

  == domain 2  score: 6.8 bits;  conditional E-value: 0.01
      TPR_14   9 eallalGdpdeAiallrralal 30 
                 +a lal+dp++A+++++++ +l
  KOO24094.1  88 SAALALDDPRGALKMFEEMRSL 109
                 6889**************9774 PP

  == domain 3  score: -0.6 bits;  conditional E-value: 2.5
      TPR_14   7 laeallalGdpdeAiall 24 
                 l +a++++ ++d+A+al+
  KOO24094.1 156 LIHACAESMQLDKAMALF 173
                 6788899999*****997 PP

  == domain 4  score: 3.6 bits;  conditional E-value: 0.11
      TPR_14   8 aeallalGdpdeAiallrralala..Pdd 34 
                   a+ ++G+++  ++ll+++ +++  Pd 
  KOO24094.1 192 INACTRNGQWELGLQLLHEMARKGiqPDT 220
                 57899**************9986422665 PP

  == domain 5  score: 0.6 bits;  conditional E-value: 0.98
      TPR_14   7 laeallalGdpdeAiallrral 28 
                 + +a+    ++++A+all ++ 
  KOO24094.1 261 AISACQKGKQWQKALALLAQMS 282
                 4566777788999999998875 PP

  == domain 6  score: 3.6 bits;  conditional E-value: 0.11
      TPR_14   6 alaeallalGdpdeAiallrra 27 
                 a+ +a+ a+G++++A+ ll+++
  KOO24094.1 295 AAISACGAAGEWEAALGLLQQM 316
                 66778889***********986 PP

>> Urocanase_N  Urocanase N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.6   0.0      0.31   4.2e+02      32      64 ..     144     176 ..     126     189 .. 0.81
   2 ?    0.8   0.0      0.27   3.8e+02      34      65 ..     181     212 ..     174     217 .. 0.86
   3 ?    7.7   0.1     0.002       2.8      38      68 ..     255     285 ..     228     296 .. 0.85
   4 ?   -1.2   0.0       1.1   1.5e+03      33      66 ..     320     353 ..     302     355 .. 0.80

  Alignments for each domain:
  == domain 1  score: 0.6 bits;  conditional E-value: 0.31
                  -SBGGGTEEETTTEESSSSHHHHHHHHHHHHH- CS
  Urocanase_N  32 aekpeeLvvYggtgkaarnweqfelivktLkel 64 
                  +   ++ v+Y+g  +a+ + +q ++ ++  + +
   KOO24094.1 144 SGLERNTVTYTGLIHACAESMQLDKAMALFTYM 176
                  55567889*********9999999998876665 PP

  == domain 2  score: 0.8 bits;  conditional E-value: 0.27
                  BGGGTEEETTTEESSSSHHHHHHHHHHHHH-- CS
  Urocanase_N  34 kpeeLvvYggtgkaarnweqfelivktLkele 65 
                    ++Lv+Y+ + +a+    q+el ++ L+e+ 
   KOO24094.1 181 IERNLVTYSVAINACTRNGQWELGLQLLHEMA 212
                  5689***********99999*99999999997 PP

  == domain 3  score: 7.7 bits;  conditional E-value: 0.002
                  TEEETTTEESSSSHHHHHHHHHHHHH--TTE CS
  Urocanase_N  38 LvvYggtgkaarnweqfelivktLkeleede 68 
                   v+Yg + +a+++ +q+++ ++ L++++e++
   KOO24094.1 255 AVTYGAAISACQKGKQWQKALALLAQMSEEK 285
                  49*************************9986 PP

  == domain 4  score: -1.2 bits;  conditional E-value: 1.1
                  SBGGGTEEETTTEESSSSHHHHHHHHHHHHH--T CS
  Urocanase_N  33 ekpeeLvvYggtgkaarnweqfelivktLkelee 66 
                  + p++ + Y  + +a+ n  ++++ ++  ++++ 
   KOO24094.1 320 RIPRNTICYNAAIQACANGLAWQHALSLFDSMKA 353
                  5688899999999999999999888888888775 PP

>> ThiI  Thiamine biosynthesis protein (ThiI)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   0.1   0.00039      0.53      47     106 ..      20      83 ..       5      92 .. 0.72
   2 ?    0.3   0.0      0.32   4.4e+02      23      90 ..     211     277 ..     209     291 .. 0.79

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.00039
        ThiI  47 ekvek..laellaeyqt..slevklvvvdfkevlkeilekvkekltivllkrkmlriAekvaee 106
                 +k++k  +a+lla++    +++v+l++ +++ ++  ++++++++ + +l ++ +l i  +v  +
  KOO24094.1  20 KKRQKwrVASLLADWAEtpGCSVRLTATHYNLLMAACVKRAPKRALQMLARMRVLGISTNVVTH 83 
                 33332224555555543125*********************************99998877654 PP

  == domain 2  score: 0.3 bits;  conditional E-value: 0.32
        ThiI  23 llkRGcrvvlvhlknepgtseeaiekveklaellaeyqtslevklvvvdfkevlkeilekvk.ekltiv 90 
                 + ++G++ ++v + n+ +t+ e+ +   ++ +l+a+    + +k ++v +   ++ +++  + +k + +
  KOO24094.1 211 MARKGIQPDTVVF-NAAITACEKGHAWDTALRLMAQMRQ-MGLKPTAVTYGAAISACQKGKQwQKALAL 277
                 778999*****99.7899999999999999999999985.89999999999999999886641444444 PP

>> DUF3322  Uncharacterized protein conserved in bacteria N-term (DUF3322)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.4   0.1     0.049        68     105     169 ..       8      66 ..       3      69 .. 0.84
   2 ?    5.3   0.2     0.013        18      91     158 ..     225     284 ..     217     293 .. 0.82
   3 ?    5.7   0.1    0.0099        14      90     147 ..     259     308 ..     252     318 .. 0.85
   4 ?    4.0   0.0     0.031        43      90     139 ..     294     343 ..     292     355 .. 0.88

  Alignments for each domain:
  == domain 1  score: 3.4 bits;  conditional E-value: 0.049
     DUF3322 105 frallellaalapelrewlerrplrllraaevwealsdddferllavlrwlrahpasglylRqlp 169
                 +++ +++l+++++++++w      r+++++++w++     +++ +  +  l a + ++ + R+l 
  KOO24094.1   8 VQNNFTTLLHTFKKRQKW------RVASLLADWAETPGCSVRLTATHYNLLMAACVKRAPKRALQ 66 
                 556667777777777777......*********99999999999999999999999999999986 PP

  == domain 2  score: 5.3 bits;  conditional E-value: 0.013
     DUF3322  91 dalrllgkekeaerfrallellaalapelrewlerrplrllraaevwealsdddferllavlrwlrah 158
                 +a++++ k ++++++ +l++++++   +  ++   ++  + ++ ++w        ++ la+l++++++
  KOO24094.1 225 AAITACEKGHAWDTALRLMAQMRQMGLKPTAVTYGAAISACQKGKQW--------QKALALLAQMSEE 284
                 57888899999999999999999999999999888889999999999........8888888777765 PP

  == domain 3  score: 5.7 bits;  conditional E-value: 0.0099
     DUF3322  90 edalrllgkekeaerfrallellaalapelrewlerrplrllraaevwealsdddfer 147
                  +a+++++k k+++++ all++++++  +   ++ +++  +  aa +w        e 
  KOO24094.1 259 GAAISACQKGKQWQKALALLAQMSEEKVKPNTIVYSAAISACGAAGEW--------EA 308
                 57899*********************9999999999999888888888........43 PP

  == domain 4  score: 4.0 bits;  conditional E-value: 0.031
     DUF3322  90 edalrllgkekeaerfrallellaalapelrewlerrplrllraaevwea 139
                 ++a++++g   e+e +  ll+++  l+ ++  ++ +++ ++ ++  +w++
  KOO24094.1 294 SAAISACGAAGEWEAALGLLQQMDTLRIPRNTICYNAAIQACANGLAWQH 343
                 57899****************************99999999999999943 PP

>> Haem_oxygenas_2  Iron-containing redox enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.3   0.1     0.011        15      61     132 ..      54     118 ..      28     121 .. 0.73
   2 ?    5.8   0.3    0.0078        11      57     132 ..     139     223 ..     135     261 .. 0.75

  Alignments for each domain:
  == domain 1  score: 5.3 bits;  conditional E-value: 0.011
  Haem_oxygenas_2  61 alGldeeplealpelpetlalinlfeavalsrrllgallGallalEllvsletlklaeelrelgldeeapey 132
                      a  ++++p++al++l         ++ +++s + +++  ++ +al l  ++ +lk+ ee+r lg+ +++++y
       KOO24094.1  54 AACVKRAPKRALQML-------ARMRVLGISTNVVTHNTAMSAALALDDPRGALKMFEEMRSLGIAPTTISY 118
                      333666777777777.......4455566666666666777777778889***************9999888 PP

  == domain 2  score: 5.8 bits;  conditional E-value: 0.0078
  Haem_oxygenas_2  57 rllkalGldeeplealpelpetlalinl.........feavalsrrllgallGallalEllvsletlklaeelrelgldeeapey 132
                      r+++a Gl +++++++  + + ++ ++l         +  v+++r+l+++ +++++ +     +  l+l++e+ + g+ ++++ +
       KOO24094.1 139 RDMEASGLERNTVTYTGLIHACAESMQLdkamalftyMDVVGIERNLVTYSVAINACTRNGQWELGLQLLHEMARKGIQPDTVVF 223
                      5678888888888888888666666666666777777999********999*****88877779999999999999999877766 PP

>> ATP-grasp_4  ATP-grasp domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.0       1.6   2.2e+03       7      38 ..     216     247 ..     216     250 .. 0.82
   2 ?    5.2   0.0      0.01        14       7      38 ..     251     282 ..     245     286 .. 0.90
   3 ?    3.5   0.0     0.035        48       7      37 ..     286     316 ..     285     326 .. 0.89

  Alignments for each domain:
  == domain 1  score: -1.9 bits;  conditional E-value: 1.6
  ATP-grasp_4   7 iKPsvgffSlGVykinneeewkaavaaieeel 38 
                  i P + +f   ++++++ + w+ a++ + ++ 
   KOO24094.1 216 IQPDTVVFNAAITACEKGHAWDTALRLMAQMR 247
                  5788888999999**********998887654 PP

  == domain 2  score: 5.2 bits;  conditional E-value: 0.01
  ATP-grasp_4   7 iKPsvgffSlGVykinneeewkaavaaieeel 38 
                  +KP+  +    ++++++ ++w++a+a + +++
   KOO24094.1 251 LKPTAVTYGAAISACQKGKQWQKALALLAQMS 282
                  8************************9888765 PP

  == domain 3  score: 3.5 bits;  conditional E-value: 0.035
  ATP-grasp_4   7 iKPsvgffSlGVykinneeewkaavaaieee 37 
                  +KP++ + S  ++++  + ew+aa+  ++++
   KOO24094.1 286 VKPNTIVYSAAISACGAAGEWEAALGLLQQM 316
                  7***********************9877754 PP

>> COX5A  Cytochrome c oxidase subunit Va
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.0         1   1.4e+03      54      72 ..      92     110 ..      62     143 .. 0.53
   2 ?   -0.3   0.0       0.8   1.1e+03      39      83 ..     112     157 ..      95     173 .. 0.68
   3 ?    6.9   0.0    0.0044       6.1      28      70 ..     206     248 ..     187     270 .. 0.83
   4 ?   -0.6   0.0      0.95   1.3e+03      40      65 ..     288     313 ..     262     340 .. 0.54
   5 ?   -1.1   0.0       1.4   1.9e+03      26      54 ..     308     337 ..     291     357 .. 0.68

  Alignments for each domain:
  == domain 1  score: -0.7 bits;  conditional E-value: 1
       COX5A  54 rvndfalavRilEavkekv 72 
                  ++d   a++++E +++  
  KOO24094.1  92 ALDDPRGALKMFEEMRSLG 110
                 5555555555555554432 PP

  == domain 2  score: -0.3 bits;  conditional E-value: 0.8
       COX5A  39 vPepkvieaalracrrvndfalavRilEavkekvenkkq.iYeyll 83 
                  P +   + a+ ac r  d  la+ ++  + +   ++++ +Y  l+
  KOO24094.1 112 APTTISYNTAISACARCVDGELALSLFRDMEASGLERNTvTYTGLI 157
                 5555556789999999999999988887666544333333565555 PP

  == domain 3  score: 6.9 bits;  conditional E-value: 0.0044
       COX5A  28 rglnnlfayDlvPepkvieaalracrrvndfalavRilEavke 70 
                 + l++++ + + P++ v +aa+ ac +   + +a+R++ ++++
  KOO24094.1 206 QLLHEMARKGIQPDTVVFNAAITACEKGHAWDTALRLMAQMRQ 248
                 457888889999*************************998876 PP

  == domain 4  score: -0.6 bits;  conditional E-value: 0.95
       COX5A  40 PepkvieaalracrrvndfalavRil 65 
                 P++ v +aa+ ac    ++  a+ +l
  KOO24094.1 288 PNTIVYSAAISACGAAGEWEAALGLL 313
                 55555555555554444444443333 PP

  == domain 5  score: -1.1 bits;  conditional E-value: 1.4
       COX5A  26 lrrglnnlfayDlvPepkvi.eaalracrr 54 
                 +  gl + +++  +P  +++ +aa++ac  
  KOO24094.1 308 AALGLLQQMDTLRIPRNTICyNAAIQACAN 337
                 444444444444589888874678899965 PP

>> Flu_B_NS1  Influenza B non-structural protein (NS1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.4   0.0     0.025        34      16      52 ..     216     252 ..     210     255 .. 0.86
   2 ?    0.1   0.0      0.24   3.4e+02      19      46 ..     254     281 ..     248     293 .. 0.81
   3 ?    3.4   0.1     0.025        35      19      42 ..     324     347 ..     314     361 .. 0.87

  Alignments for each domain:
  == domain 1  score: 3.4 bits;  conditional E-value: 0.025
                 HHHHHHHHHHHHHHHHHHHHTTT-S-HHHHHHHHHHH CS
   Flu_B_NS1  16 atnatinfeagilecyerfswqraldypgqdrlhrlk 52 
                     t+ f+a i  c +  +w+ al    q r   lk
  KOO24094.1 216 IQPDTVVFNAAITACEKGHAWDTALRLMAQMRQMGLK 252
                 556799********************99999877666 PP

  == domain 2  score: 0.1 bits;  conditional E-value: 0.24
                 HHHHHHHHHHHHHHHHHTTT-S-HHHHH CS
   Flu_B_NS1  19 atinfeagilecyerfswqraldypgqd 46 
                 +++ + a i  c +   wq+al    q 
  KOO24094.1 254 TAVTYGAAISACQKGKQWQKALALLAQM 281
                 568899***************9887775 PP

  == domain 3  score: 3.4 bits;  conditional E-value: 0.025
                 HHHHHHHHHHHHHHHHHTTT-S-H CS
   Flu_B_NS1  19 atinfeagilecyerfswqraldy 42 
                  ti ++a i  c + ++wq+al  
  KOO24094.1 324 NTICYNAAIQACANGLAWQHALSL 347
                 699******************975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (377 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       509  (0.0283898); expected 358.6 (0.02)
Passed bias filter:                      407  (0.0227007); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                        14  (0.000780858); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 0.60u 0.30s 00:00:00.89 Elapsed: 00:00:00.45
# Mc/sec: 2519.49
//
Query:       KOO24095.1  [L=1522]
Description: protein rrp5-like protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.6e-35  119.5   0.1    2.9e-10   40.3   0.1    6.9  7  S1        S1 RNA binding domain
    3.1e-10   40.5   0.2    1.4e-06   28.6   0.0    3.2  3  Suf       Suppressor of forked protein (Suf)
    0.00082   19.8   0.1        1.8    9.2   0.0    3.1  3  TPR_19    Tetratricopeptide repeat
  ------ inclusion threshold ------
      0.043   12.9   0.1       0.85    8.7   0.0    2.2  2  NRDE-2    NRDE-2, necessary for RNA interference
       0.11   13.2   2.9    1.7e+02    3.2   0.0    5.0  4  TPR_6     Tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> S1  S1 RNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.8   0.0     0.086   3.1e+02       4      36 ..     137     169 ..     134     170 .. 0.94
   2 !   29.1   0.0   2.7e-10   9.5e-07       2      75 .]     471     543 ..     470     543 .. 0.97
   3 !   11.7   0.0   7.1e-05      0.25      10      72 ..     568     633 ..     562     636 .. 0.91
   4 ?   -3.5   0.0         4   1.4e+04       5      61 ..     794     851 ..     792     853 .. 0.57
   5 !   10.7   0.0   0.00014       0.5       2      63 ..     903     964 ..     902     969 .. 0.94
   6 !   15.6   0.3   4.2e-06     0.015       2      47 ..    1011    1057 ..    1010    1068 .. 0.85
   7 !   40.3   0.1   8.2e-14   2.9e-10       4      73 ..    1109    1178 ..    1107    1179 .. 0.96

  Alignments for each domain:
  == domain 1  score: 1.8 bits;  conditional E-value: 0.086
                 TTCEEEEEEEEEETTEEEEEETTTEEEEEEGGG CS
          S1   4 kgevveGeVtsvtkgGafVelgngvegfvpase 36 
                 +g +v G V++v+ + +  +l n ++g + +se
  KOO24095.1 137 TGMRVLGAVSEVSSDRLLLQLPNRHTGRINRSE 169
                 6899*************************9997 PP

  == domain 2  score: 29.1 bits;  conditional E-value: 2.7e-10
                 STTTCEEEEEEEEEETTEEEEEETTTEEEEEEGGGSSSSCEESCHHHCEETTEEEEEEEEEEETTTTEEEEEEC CS
          S1   2 pekgevveGeVtsvtkgGafVelgngvegfvpaselsrdarvedpdevlkvGdevkvkvlkvdkdrrriilsik 75 
                 +++g v++G++ +++  Ga+V+lg gv g + a++l  + r + p e+++ G+ v   vl+ +  r++++ls+k
  KOO24095.1 471 VAVGHVLKGTIARIDARGARVRLGRGVYGTCGAAHLTER-RLQRPQEKFSTGQAVQCLVLESEPLREKLVLSLK 543
                 579************************************.*******************************986 PP

  == domain 3  score: 11.7 bits;  conditional E-value: 7.1e-05
                 EEEEEEETTEEEEEETTTEEEEEEGGGSSSS...CEESCHHHCEETTEEEEEEEEEEETTTTEEEE CS
          S1  10 GeVtsvtkgGafVelgngvegfvpaselsrd...arvedpdevlkvGdevkvkvlkvdkdrrriil 72 
                 G+V  + +  + ++l++gv+g v  sel+++      ++p+  +++G+ v   v+ +d + r++ l
  KOO24095.1 568 GVVAALRPRSITIRLLGGVSGIVRGSELKARfgaLWESEPTACYREGQVVSCTVISCDPAQRKMLL 633
                 89999999999**********************988899999****************99998766 PP

  == domain 4  score: -3.5 bits;  conditional E-value: 4
                 TCEEEEEEEEEETTEEEEEETTTEEEEEEGGGSSSSCEESCH.HHCEETTEEEEEEEE CS
          S1   5 gevveGeVtsvtkgGafVelgngvegfvpaselsrdarvedp.devlkvGdevkvkvl 61 
                 g++  G V +v+ +++ V l + ++g v a e s+d++v  +  ++++vG  v v+vl
  KOO24095.1 794 GQIHPGWVRDVSAEAVWVCLSYAATGRVVAIEASDDPKVLTRlAKHFRVGMAVTVRVL 851
                 5555666666666666666666666666666666663332221456677777777776 PP

  == domain 5  score: 10.7 bits;  conditional E-value: 0.00014
                 STTTCEEEEEEEEEET.TEEEEEETTTEEEEEEGGGSSSSCEESCHHHCEETTEEEEEEEEEE CS
          S1   2 pekgevveGeVtsvtk.gGafVelgngvegfvpaselsrdarvedpdevlkvGdevkvkvlkv 63 
                 +++g+vv +++++  +  G+ V+lg+   g  +a e+ ++  v +p   + +G+ v+++vl v
  KOO24095.1 903 LAVGAVVPAKIVRARPgRGLDVQLGAALYGRAHATEICDE-WVAEPLSSFEPGQFVRAVVLAV 964
                 679*************99**********************.9******************998 PP

  == domain 6  score: 15.6 bits;  conditional E-value: 4.2e-06
                  STTTCEEEEEEEEEETTEEEEEETTTEEEEEEGGGSSSS.CEESCHH CS
          S1    2 pekgevveGeVtsvtkgGafVelgngvegfvpaselsrd.arvedpd 47  
                  +e+ge v G V+ ++ +G fV l   v+gfv + +ls++ ++ve  +
  KOO24095.1 1011 VEEGELVRGYVKAISAKGCFVSLSRTVDGFVGLRHLSDEfVKVEAVS 1057
                  689**********************************9965555555 PP

  == domain 7  score: 40.3 bits;  conditional E-value: 8.2e-14
                  TTCEEEEEEEEEETTEEEEEET.TTEEEEEEGGGSSSSCEESCHHHCEETTEEEEEEEEEEETTTTEEEEE CS
          S1    4 kgevveGeVtsvtkgGafVelg.ngvegfvpaselsrdarvedpdevlkvGdevkvkvlkvdkdrrriils 73  
                  +g v  G+V+svt++G+fV+l+   +++++++ e+s++ +v + +e +  G  vkv +lkv+ +++ ++ s
  KOO24095.1 1109 AGMVAIGKVKSVTEFGIFVRLDgSTIDALCHKTEVSDR-KVGNLSEAFPLGTAVKVAILKVNPEKKQVSGS 1178
                  688999********************************.***************************99987 PP

>> Suf  Suppressor of forked protein (Suf)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.9   0.0     0.012        45      73     122 ..    1271    1322 ..    1257    1335 .. 0.81
   2 !   13.3   0.0   1.7e-05     0.062      36     121 ..    1341    1424 ..    1329    1427 .. 0.93
   3 !   28.6   0.0   3.8e-10   1.4e-06       3     138 ..    1376    1512 ..    1376    1519 .. 0.85

  Alignments for each domain:
  == domain 1  score: 3.9 bits;  conditional E-value: 0.012
         Suf   73 vlkYldyLislnddnnaRvlfekvvsk..lskekeakelykkfleyestfgd 122 
                   ++Y+++ ++l + ++aR + e+++++  l+++ke  ++ +  l+ e+ +gd
  KOO24095.1 1271 WMRYISFQLNLTEIERARQVGERALRTiaLTEHKERFNIHAALLNLEKAHGD 1322
                  589***********************95555666677788888888888887 PP

  == domain 2  score: 13.3 bits;  conditional E-value: 1.7e-05
         Suf   36 evyvasAllEyyiskdkkvAtkIFelGlKkFpedeefvlkYldyLislnddnnaRvlfekvvsklskekeakelykkfleyestfg 121 
                  +vy  +A +    + d+ +A   Fe+++KkF  + +  ++++  L+      +a+++++++v +l       e+++kf++ e ++g
  KOO24095.1 1341 QVYLHVASMHER-AGDALLADAAFEVAAKKFRPHSDVWIAWMTALMARGVPAQAKAILQRAVDALPRAS-HVEVISKFAQLEFRYG 1424
                  89999**99555.999999**************************************************.9***********9998 PP

  == domain 3  score: 28.6 bits;  conditional E-value: 3.8e-10
         Suf    3 vwikymrasrRaeGi.kgaRkvFkkARkkprlty..evyvasAllEyyiskdkkvAtkIFelGlKkFpedeefvlkYldyLislnddnnaRvlfekv 96  
                  vwi++m+a+  a+G+  +a ++ ++A       +  ev   +A+lE+  +  ++ ++ +F+  l ++p+  +    Y+d  ++  + +++R lfe+v
  KOO24095.1 1376 VWIAWMTALM-ARGVpAQAKAILQRAVDALPRAShvEVISKFAQLEFR-YGLPERGRTVFDGVLANYPKRVDVWSIYIDMQLRQAEPESTRRLFERV 1470
                  8999999986.7776156899999999554444402677789******.666666****************************************** PP

         Suf   97 vsk.lskekeakelykkfleyestfgdlssilklekRmeelfp 138 
                   s  ls++k +k  ++++l+y+ + gd + +  + ++ ++ ++
  KOO24095.1 1471 TSLrLSSKK-MKYFFSRYLKYARESGDAQLVAHVKEKARAWVE 1512
                  996488888.***********************9999887665 PP

>> TPR_19  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.4   0.0    0.0035        13      11      50 ..    1254    1293 ..    1243    1301 .. 0.87
   2 !    8.2   0.1   0.00096       3.4      13      57 ..    1362    1406 ..    1352    1416 .. 0.79
   3 !    9.2   0.0   0.00049       1.8       1      60 [.    1384    1445 ..    1384    1453 .. 0.90

  Alignments for each domain:
  == domain 1  score: 6.4 bits;  conditional E-value: 0.0035
      TPR_19   11 lalleqalqedpknaearllLAeallalgqldeAealLda 50  
                  ++ +e++l  +p++++ +++++  +l+l +++ A+++ ++
  KOO24095.1 1254 AEDFERLLLGSPNSSYMWMRYISFQLNLTEIERARQVGER 1293
                  567999*****************************98555 PP

  == domain 2  score: 8.2 bits;  conditional E-value: 0.00096
      TPR_19   13 lleqalqedpknaearllLAeallalgqldeAealLdalpeedpd 57  
                  ++e a ++   +++++++ + al+a g +++A+a+L+++ ++ p 
  KOO24095.1 1362 AFEVAAKKFRPHSDVWIAWMTALMARGVPAQAKAILQRAVDALPR 1406
                  455555555568999999999*****************9999887 PP

  == domain 3  score: 9.2 bits;  conditional E-value: 0.00049
      TPR_19    1 llaegdyaeAlalleqalqedpk..naearllLAeallalgqldeAealLdalpeedpddar 60  
                  l+a+g +a+A a+l++a ++ p   + e+    A++ +  g ++  + + d +++ +p+  +
  KOO24095.1 1384 LMARGVPAQAKAILQRAVDALPRasHVEVISKFAQLEFRYGLPERGRTVFDGVLANYPKRVD 1445
                  789999**************99988999999********************99999998555 PP

>> NRDE-2  NRDE-2, necessary for RNA interference
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.7   0.0   0.00024      0.85      86     137 ..    1252    1300 ..    1229    1351 .. 0.76
   2 ?    1.8   0.0     0.029     1e+02      85     123 ..    1427    1462 ..    1365    1509 .. 0.70

  Alignments for each domain:
  == domain 1  score: 8.7 bits;  conditional E-value: 0.00024
      NRDE-2   86 klakeWeellkenpnsvkLWreyldfrqsnfasfsvekvkelyekclrtlsa 137 
                  + a+ +e+ll  +pns  +W++y++f+++     ++e+ +++ e++lrt+  
  KOO24095.1 1252 RSAEDFERLLLGSPNSSYMWMRYISFQLN---LTEIERARQVGERALRTIAL 1300
                  56777888888888888888888888877...44677777777777776543 PP

  == domain 2  score: 1.8 bits;  conditional E-value: 0.029
      NRDE-2   85 eklakeWeellkenpnsvkLWreyldfrqsnfasfsvek 123 
                  e+ ++ ++ +l ++p+ v++W  y+d+++++ +     +
  KOO24095.1 1427 ERGRTVFDGVLANYPKRVDVWSIYIDMQLRQAEPE---S 1462
                  55556677788899999999999999988865544...2 PP

>> TPR_6  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.4   0.1     0.085     3e+02       5      26 ..     411     432 ..     410     434 .. 0.88
   2 ?    1.7   0.0      0.14     5e+02       2      30 ..    1342    1370 ..    1341    1374 .. 0.87
   3 ?    3.2   0.0     0.046   1.7e+02      11      30 ..    1385    1404 ..    1377    1407 .. 0.78
   4 ?    1.1   0.0      0.22   7.8e+02       7      32 ..    1417    1442 ..    1415    1442 .. 0.85

  Alignments for each domain:
  == domain 1  score: 2.4 bits;  conditional E-value: 0.085
                 HHHHHHHHHHHHHHHHHHHHHH CS
       TPR_6   5 klalsyrklgdtdkAlealerl 26 
                 + a+s++ l+  +kA +al++l
  KOO24095.1 411 WVARSQLDLQPRQKAADALRQL 432
                 5699***976999*******98 PP

  == domain 2  score: 1.7 bits;  conditional E-value: 0.14
                  HHHHHHHHHHHHHHHHHHHHHHHHHHHH- CS
       TPR_6    2 AlyklalsyrklgdtdkAlealerlikeY 30  
                  ++++ a  ++++gd+  A +a+e   k++
  KOO24095.1 1342 VYLHVASMHERAGDALLADAAFEVAAKKF 1370
                  6788899999999***********99995 PP

  == domain 3  score: 3.2 bits;  conditional E-value: 0.046
                  HHHHHHHHHHHHHHHHHHH- CS
       TPR_6   11 rklgdtdkAlealerlikeY 30  
                   + g +++A+++l+r ++  
  KOO24095.1 1385 MARGVPAQAKAILQRAVDAL 1404
                  445699*********99865 PP

  == domain 4  score: 1.1 bits;  conditional E-value: 0.22
                  HHHHHHHHHHHHHHHHHHHHHHH-TT CS
       TPR_6    7 alsyrklgdtdkAlealerlikeYPd 32  
                  a++ ++ g +++ ++ ++ ++ +YP+
  KOO24095.1 1417 AQLEFRYGLPERGRTVFDGVLANYPK 1442
                  56667767999**************6 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1522 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       459  (0.025601); expected 358.6 (0.02)
Passed bias filter:                      320  (0.0178482); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.85u 0.27s 00:00:01.12 Elapsed: 00:00:00.45
# Mc/sec: 10161.93
//
Query:       KOO24096.1  [L=350]
Description: hypothetical protein Ctob_004670 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (350 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       595  (0.0331865); expected 358.6 (0.02)
Passed bias filter:                      351  (0.0195772); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.45u 0.24s 00:00:00.69 Elapsed: 00:00:00.39
# Mc/sec: 2659.47
//
Query:       KOO24097.1  [L=207]
Description: hypothetical protein Ctob_012458 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (207 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       363  (0.0202465); expected 358.6 (0.02)
Passed bias filter:                      295  (0.0164538); expected 358.6 (0.02)
Passed Vit filter:                        12  (0.000669307); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.22s 00:00:00.59 Elapsed: 00:00:00.36
# Mc/sec: 1715.74
//
Query:       KOO24098.1  [L=337]
Description: hypothetical protein Ctob_012459 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (337 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       367  (0.0204696); expected 358.6 (0.02)
Passed bias filter:                      297  (0.0165653); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.41u 0.23s 00:00:00.64 Elapsed: 00:00:00.37
# Mc/sec: 2750.35
//
Query:       KOO24099.1  [L=371]
Description: phosphoribosylglycinamide synthetase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.4e-10   41.0   0.0    2.6e-10   40.1   0.0    1.4  1  ATP-grasp_4      ATP-grasp domain
    2.9e-10   40.3   0.0    2.5e-07   30.6   0.0    2.3  2  GARS_A           Phosphoribosylglycinamide synthetase, ATP-gr
    2.3e-06   27.8   0.0    4.4e-06   26.8   0.0    1.5  1  ATP-grasp_3      ATP-grasp domain
  ------ inclusion threshold ------
      0.017   14.7   0.1      0.027   14.0   0.1    1.5  1  CPSase_L_D2      Carbamoyl-phosphate synthase L chain, ATP bi
      0.025   14.3   0.1        0.2   11.4   0.0    2.4  2  ATPgrasp_Ter     ATP-grasp in the biosynthetic pathway with T
      0.056   13.6   0.1       0.32   11.2   0.1    2.2  2  LAL_C2           L-amino acid ligase C-terminal domain 2
       0.12   11.9   0.0       0.21   11.1   0.0    1.4  1  Dala_Dala_lig_C  D-ala D-ala ligase C-terminus


Domain annotation for each model (and alignments):
>> ATP-grasp_4  ATP-grasp domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.1   0.0     1e-13   2.6e-10       2     153 ..      85     228 ..      84     233 .. 0.79

  Alignments for each domain:
  == domain 1  score: 40.1 bits;  conditional E-value: 1e-13
  ATP-grasp_4   2 slPvviKPsvgffSlGVykinneeewkaavaaieeeleqakeeykeevveeesflvEeyieGeEfavdayfdeeGepvilni..lkkefaseedvsd. 96 
                  ++P+++KP+  ++S GV ++  +e  +a ++ + ++    +++y +    ++ ++  e++ G+E+ vd    ++G +  + +  ++++   + d+++ 
   KOO24099.1  85 RYPIIVKPTESAGSDGVKRCVCREAAEAHFELLMRS----QHRYGS---AGAAVICQEFLTGTEYVVDHVS-RHGVHRTVMVwrYDRRPNGSGDFVEf 174
                  69*******************999888877777644....566775...47899**************987.88865555551155666667776541 PP

  ATP-grasp_4  97 rlyvtsakvieetlealeellkevnallglknfpvHiElrvsedgkiipiEvnplrf 153
                   +  ++++    + + l  +++ v  ++g++++p+H+E+ ++ +g+ + +E+n ++ 
   KOO24099.1 175 NMLPVPSDA--PEVAGLVAYTRGVLDAIGVRHGPTHAEVMLTTEGPCL-VEMNCRSH 228
                  455555555..7789999**************************9776.8***9765 PP

>> GARS_A  Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.6   0.0   9.9e-11   2.5e-07       2      99 ..      50     147 ..      49     171 .. 0.88
   2 !    7.4   0.0    0.0014       3.5     170     189 ..     208     227 ..     196     230 .. 0.89

  Alignments for each domain:
  == domain 1  score: 30.6 bits;  conditional E-value: 9.9e-11
                 BHHHHHHHHHHTT--B--EEEESSHHHHHHHHHHHSSSEEEEEESC-GGGT-EEEESSHHHHHHHHHHHCT.S-TTCCCCSSEEEEE---SEEEEEEEE CS
      GARS_A   2 sKsfakdllkkagiptaeyeaftdpeeakeyieeatakalVvKadglaagKgvivakseeealkavkeile.kkkfGeagekvviEelleGeEvsllal 99 
                 +Ks+ ++ +k+ag+++++  + t  +e+ +++ +   ++ +vK+   a+  gv+ +  +e a ++ + +++ ++++G+ag+ v+  e+l+G+E  +  +
  KOO24099.1  50 NKSWQQKAVKAAGLRATREVSGTTLAEVASFLAAERYPI-IVKPTESAGSDGVKRCVCREAAEAHFELLMRsQHRYGSAGAAVICQEFLTGTEYVVDHV 147
                 79************************************9.*************9999888888888888862578******************877554 PP

  == domain 2  score: 7.4 bits;  conditional E-value: 0.0014
                 EEEEEEETTEEEEEEEESS- CS
      GARS_A 170 yaglmlvedgpkvlefnvRf 189
                 +a++ml+++gp ++e+n+R 
  KOO24099.1 208 HAEVMLTTEGPCLVEMNCRS 227
                 789****************5 PP

>> ATP-grasp_3  ATP-grasp domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.8   0.0   1.7e-09   4.4e-06      27     160 ..      81     229 ..      49     230 .. 0.83

  Alignments for each domain:
  == domain 1  score: 26.8 bits;  conditional E-value: 1.7e-09
                  SS--SSSEEEEESS-------B--SS--TTE....................EEEE---SEEEEEEEEE.SSSEEEEEEEEEEEET......TEEEEEE CS
  ATP-grasp_3  27 leeeekklvvKprdGaggesvrvveekeeaeaaieeve.............lvqefieGkplSvsllsdgekvlvlavnrqliekaeke..fvyaGnv 109
                  l+ e ++++vKp ++ag+++v     +e+aea +e +              + qef+ G+++ v+ +s +   ++++v r     ++++  + ++   
   KOO24099.1  81 LAAERYPIIVKPTESAGSDGVKRCVCREAAEAHFELLMrsqhrygsagaavICQEFLTGTEYVVDHVSRHGVHRTVMVWRYDRRPNGSGdfVEFNMLP 178
                  456699**************9887777777777776666789***************************99999999998877666666666676667 PP

                  ES----HHHHHHHHHHHHHTTSTT--EEEEEEEEESS.SEEEEEEESS--G CS
  ATP-grasp_3 110 tpietelkeevvelaeevvekleglaGyvGvDlvlkdeepyviEvNPRltt 160
                  +p++  +   +v+  + v+ ++    G    +++l+ e+p+++E N R  +
   KOO24099.1 179 VPSDAPEVAGLVAYTRGVLDAIGVRHGPTHAEVMLTTEGPCLVEMNCRSHG 229
                  77777778899999999*****55579999*****************9765 PP

>> CPSase_L_D2  Carbamoyl-phosphate synthase L chain, ATP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.1   1.1e-05     0.027       5      92 ..      54     140 ..      50     243 .. 0.78

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 1.1e-05
                  HHHHHHHTT-BBSSEECSSBSSHHHHHHHHHHH-SSEEEEETTCCTTTTEEEESSHHHHHHHHHHHHHHHHHHHST..S-EEEEE--SSS CS
  CPSase_L_D2   5 akealkkinvpvvpssaapvetleealaiakeigyPviikaafglGGkGmrvarneeelaelvkkalaeakaafgn..kqvlvekslkgp 92 
                   ++a+k+++ +  + +++  +tl e+ ++ +   yP+i+k++ + G  G + +  +e  ++ ++  ++     +g+  + v  +++l+g 
   KOO24099.1  54 QQKAVKAAGLRATREVSG--TTLAEVASFLAAERYPIIVKPTESAGSDGVKRCVCREAAEAHFELLMRSQ-HRYGSagAAVICQEFLTGT 140
                  567888888888888888..9999999999999****************997766666665555444333.2333211455566666665 PP

>> ATPgrasp_Ter  ATP-grasp in the biosynthetic pathway with Ter operon
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   7.8e-05       0.2       4      41 ..     130     170 ..     127     234 .. 0.61
   2 ?   -2.8   0.1       1.9     5e+03      17      53 ..     324     364 ..     323     366 .. 0.61

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 7.8e-05
  ATPgrasp_Ter   4 allvmeyLegpEySvDvlaekgevl.aavpRrKe..kgglq 41 
                   a++ +e+L g+Ey vD ++++g    ++v R+    +g+  
    KOO24099.1 130 AVICQEFLTGTEYVVDHVSRHGVHRtVMVWRYDRrpNGSGD 170
                   56889***************985542567775443344444 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 1.9
  ATPgrasp_Ter  17 SvDvlaekgevl.....aavpRrKekgglqelekdeeliela 53 
                   +vD+++  g+v+     aav  +     +++le+   l+++a
    KOO24099.1 324 TVDIFTAVGSVIlchddAAVVAADV-AAIRSLEDAGPLVDVA 364
                   6888888777775555555555555.6666677766666666 PP

>> LAL_C2  L-amino acid ligase C-terminal domain 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.0      0.83   2.1e+03      22      51 ..      97     126 ..      91     130 .. 0.83
   2 ?   11.2   0.1   0.00012      0.32       3      69 ..     283     351 ..     281     354 .. 0.88

  Alignments for each domain:
  == domain 1  score: -1.1 bits;  conditional E-value: 0.83
      LAL_C2  22 alpgvveveltvkpGdevrpprssgdrlGy 51 
                  ++gv+++ ++ ++ ++ + +  s +r+G 
  KOO24099.1  97 GSDGVKRCVCREAAEAHFELLMRSQHRYGS 126
                 568999999999999999999999999996 PP

  == domain 2  score: 11.2 bits;  conditional E-value: 0.00012
      LAL_C2   3 ltaprpGrlkaveGleearalpgvvevel..tvkpGdevrpprssgdrlGyviatgdtaeeaeaaaeea 69 
                 l+++ +G++++ve le++r+l   v  ++   + pG+ +  + +  + +G vi + d+a+ + a ++++
  KOO24099.1 283 LVSKYEGTIVSVEPLEALRQLRSFVCMHVpsSITPGEPLAITVDIFTAVGSVILCHDDAAVVAADVAAI 351
                 567789*******************999944578*************************9988877665 PP

>> Dala_Dala_lig_C  D-ala D-ala ligase C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   8.1e-05      0.21      28      71 ..      77     120 ..      56     146 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 8.1e-05
                      HHHHHHHC-SSEEEEESSSSTTTTEEEESSGGGHHHHHHHHHTT CS
  Dala_Dala_lig_C  28 lekveeelgypvfVKpareGSSvGvskveseeelkeaieeafky 71 
                      +++  ++  yp++VKp ++  S Gv+++  +e  ++ +e  ++ 
       KOO24099.1  77 VASFLAAERYPIIVKPTESAGSDGVKRCVCREAAEAHFELLMRS 120
                      555667789**********************9999988877665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (371 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       350  (0.0195214); expected 358.6 (0.02)
Passed bias filter:                      301  (0.0167884); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.44u 0.23s 00:00:00.67 Elapsed: 00:00:00.37
# Mc/sec: 3014.18
//
Query:       KOO24100.1  [L=466]
Description: hypothetical protein Ctob_012457 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    9.8e-08   32.2   0.0    1.5e-07   31.6   0.0    1.2  1  Nucleotid_trans  Nucleotide-diphospho-sugar transferase


Domain annotation for each model (and alignments):
>> Nucleotid_trans  Nucleotide-diphospho-sugar transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.6   0.0   8.2e-12   1.5e-07       4     124 ..     158     278 ..     155     303 .. 0.85

  Alignments for each domain:
  == domain 1  score: 31.6 bits;  conditional E-value: 8.2e-12
  Nucleotid_trans   4 enllvvAlDeealerckelgvpvlyltskgkdsakkdeefksktykkmswrkvrlllellklGynvllsDvDvvWlrnpfpllky...edaDvl 94 
                      +n lv+++D+e++  ++++g+p +   s   + +   ++  ++  +++ + +v ++ +l+ +G +vl +D+ v+  ++ +p l+     + D++
       KOO24100.1 158 TNALVLSMDAELHADLRRRGLPSF-DNSA--NLDAWNTTCLQRHVQRVRTERVLAVAALVAAGLDVLHMDATVILVQDVLPSLRAaaaARVDMM 248
                      799*******************44.4444..455567777788899999**********************************44556999999 PP

  Nucleotid_trans  95 vssDsldgttadelknliNsGfffvratea 124
                       +  +  ++  ++ +  +N Gf +vra +a
       KOO24100.1 249 AQRHECPPNVERHTGSGVNPGFLYVRAARA 278
                      999777777788999999********9876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (466 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       337  (0.0187964); expected 358.6 (0.02)
Passed bias filter:                      289  (0.0161191); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.23s 00:00:00.68 Elapsed: 00:00:00.37
# Mc/sec: 3823.82
//
Query:       KOO24101.1  [L=279]
Description: hypothetical protein Ctob_012460, partial [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.051   11.9   4.0      0.066   11.5   4.0    1.1  1  DUF2070   Predicted membrane protein (DUF2070)
      0.097   11.5   1.1        0.1   11.5   0.1    1.6  2  EcsB      Bacterial ABC transporter protein EcsB


Domain annotation for each model (and alignments):
>> DUF2070  Predicted membrane protein (DUF2070)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   4.0   7.4e-06     0.066      38     160 ..      36     172 ..      11     192 .. 0.71

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 7.4e-06
     DUF2070  38 lfgillfglpalvaflltlpvlrilggr....ltykrs.lflalltelivviisllaillsall.....qalvllalvlslalvfalrllvlvavsdes 126
                    +++ g pal++++l+l +  ++gg+     ++++      ll ++++++  ll +++ al      + l+  +l+ + a+++al+  + + ++d s
  KOO24101.1  36 SGVLFAAGTPALATAVLFLLFALFSGGHkaagAPSRHGaEGSGLLRTMVYSVCALLVVAALALRgdgasAPLSAISLLAGAAVAAALPAALATDMGDLS 134
                 4568999*********************99975555556666677777777766666666666699888888889999999999999999999999998 PP

     DUF2070 127 llkavlpaliqpllailllvly....fspesfllllll 160
                  + ++  ++++ +l++lll l+    +++ + + ++++
  KOO24101.1 135 RRASLRSSAVTAALIVLLLALVapmlIAMMQPAGAAAA 172
                 88777666666666666665553333222222222222 PP

>> EcsB  Bacterial ABC transporter protein EcsB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.3   0.2      0.68   6.1e+03     112     117 ..      51      56 ..      39      63 .. 0.43
   2 ?   11.5   0.1   1.1e-05       0.1      89     147 ..     128     186 ..     124     220 .. 0.90

  Alignments for each domain:
  == domain 1  score: -4.3 bits;  conditional E-value: 0.68
        EcsB 112 lvllil 117
                 +++l++
  KOO24101.1  51 VLFLLF 56 
                 111111 PP

  == domain 2  score: 11.5 bits;  conditional E-value: 1.1e-05
        EcsB  89 selksYlkksiryslllqllllllvllillPlllettglsiaelllllllllllkllnl 147
                 +++ ++ +++ ++s ++++ l++l+l++++P+l++ ++  +a+   ++++ ++lk+++ 
  KOO24101.1 128 TDMGDLSRRASLRSSAVTAALIVLLLALVAPMLIAMMQPAGAAAAKVAVVSAALKAASA 186
                 7899999************************************************9875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (279 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1002  (0.0558871); expected 358.6 (0.02)
Passed bias filter:                      271  (0.0151152); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.45u 0.21s 00:00:00.66 Elapsed: 00:00:00.37
# Mc/sec: 2249.58
//
Query:       KOO24102.1  [L=416]
Description: dead-domain-containing protein, partial [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    9.5e-45  152.5   0.0    6.9e-44  149.7   0.0    1.9  2  DEAD        DEAD/DEAH box helicase
    2.7e-31  108.2   0.0    5.7e-30  103.9   0.0    2.3  2  Helicase_C  Helicase conserved C-terminal domain
    6.4e-05   23.0   0.0    0.00021   21.4   0.0    1.7  2  ResIII      Type III restriction enzyme, res subunit
     0.0014   19.0   0.1        1.5    9.1   0.1    2.3  2  AAA_19      AAA domain
  ------ inclusion threshold ------
      0.032   13.0   0.0        3.5    6.3   0.0    2.4  3  UTP25       Utp25, U3 small nucleolar RNA-associated SSU proc
       0.13   11.6   0.1       0.75    9.1   0.0    2.0  2  CMS1        U3-containing 90S pre-ribosomal complex subunit


Domain annotation for each model (and alignments):
>> DEAD  DEAD/DEAH box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  149.7   0.0   2.3e-47   6.9e-44      21     176 .]      45     207 ..      31     207 .. 0.95
   2 ?    0.5   0.0      0.15   4.6e+02      47     104 ..     254     311 ..     224     318 .. 0.66

  Alignments for each domain:
  == domain 1  score: 149.7 bits;  conditional E-value: 2.3e-47
                 ESTTSSHHHHHHHHHHHHHHHS..........TTSTS-EEEEEESSHHHHHHHHHHHHHHTTTSTSEEEEEETTSSHHHHHHHHHTTCSEEEEEHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxx..........xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD  21 aeTGsGKTlaflipvlqivyet..........kgktgpkalivePtreLaeqtlnnlkkfkkyidlrvlliiggvaardqlskldngvdivvgtpgrld 109
                  +TGsGKT+afl+p l+++++           +g+ +p+ali++PtreLa+q++++++kf + + + + +++gg + r+q+++ld+g++++v+tpgrl 
  KOO24102.1  45 TPTGSGKTGAFLFPTLHQMLHAldaqpdpgvsQGRAEPRALILAPTRELANQIMTETRKFAQRTPIHAYVVYGGADIRQQMNQLDRGCHLLVATPGRLC 143
                 69**************9999999********99*****************************9999999****************************** PP

                 HHHHCTSSHCTTEEEEEEETHHHHHHTTTHHHHHHHHHHSHHHCTTST.TTSEEEEEESSBSHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxx RF
        DEAD 110 dllstgklnlsqvrflVlDEadrlldqgfsdfinrilnqlpqitcdgk.lqrqvivlSATlpkdvkkl 176
                 dl+++gk++l++v  l+lDEadr+ld+gf+++i+r++++        +  qrq++++SAT+pk++++l
  KOO24102.1 144 DLVERGKVSLHRVHHLILDEADRMLDMGFEPQIRRVVERE----GMPPaGQRQTLMFSATFPKEIQRL 207
                 ************************************9998....444558899*********999875 PP

  == domain 2  score: 0.5 bits;  conditional E-value: 0.15
                 S-EEEEEESSHHHHHHHHHHHHHHTTTSTSEEEEEETTSSHHHHHHHH...HTT.CSEEEEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxx.xxxxxxx RF
        DEAD  47 gpkalivePtreLaeqtlnnlkkfkkyidlrvlliiggvaardqlskl...dng.vdivvgt 104
                 + +++i + t+  aeq  + l ++     + + +i g+ ++r+  ++l   ++g + ++v+t
  KOO24102.1 254 TGRTIIFVETKRAAEQLEEFLHRSS----VPATSIHGDRSQREREQALlafRRGsPSVLVAT 311
                 4566666666666666555554444....455677777777666666655444457777777 PP

>> Helicase_C  Helicase conserved C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.8   0.0       0.1     3e+02      16      73 ..      81     138 ..      65     170 .. 0.73
   2 !  103.9   0.0   1.9e-33   5.7e-30       5     111 .]     245     349 ..     241     349 .. 0.93

  Alignments for each domain:
  == domain 1  score: 1.8 bits;  conditional E-value: 0.1
                 TSEEEEEESSHHHHHH....HHHHHHHTTSTEEEESTTSTHHHHHHHHHHHHTTSSSEEEES CS
  Helicase_C  16 ggkilifvntidrlek....vklllekkgikvavlhgelpqnereeileqfnkgesdvLiat 73 
                 + ++li ++t++ +++    ++ + ++  i++ v++g    +++   l++     +++L+at
  KOO24102.1  81 EPRALILAPTRELANQimteTRKFAQRTPIHAYVVYGGADIRQQMNQLDRG----CHLLVAT 138
                 678999999999665555567777777799999999965555444444433....5666666 PP

  == domain 2  score: 103.9 bits;  conditional E-value: 1.9e-33
                 HHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTTSTEEEESTTSTHHHHHHHHHHHHTTSSSEEEESGGGTSSSTSTTESEEEESSSSSSHHHHHHH CS
  Helicase_C   5 allellkleeeggkilifvntidrlekvklllekkgikvavlhgelpqnereeileqfnkgesdvLiatdvaerGidipkvnlVinfdlprnvtsyiqr 103
                  lle l   + +g+++ifv+t++ +e+++ +l+++++ ++ +hg+ +q+ere++l +f++g+  vL+atdva+rG+d+p++ +Vin++lpr++tsy++r
  KOO24102.1 245 VLLEQL--AACTGRTIIFVETKRAAEQLEEFLHRSSVPATSIHGDRSQREREQALLAFRRGSPSVLVATDVAARGLDVPECMHVINYELPREITSYVHR 341
                 455554..67899**********999988888999**************************************************************** PP

                 HTTSSSTT CS
  Helicase_C 104 iGRtgRag 111
                 iGRtgR+g
  KOO24102.1 342 IGRTGRMG 349
                 ******87 PP

>> ResIII  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.4   0.0   6.9e-08   0.00021      31     170 ..      45     201 ..      27     202 .. 0.78
   2 ?   -1.6   0.0      0.77   2.3e+03      56      72 ..     256     272 ..     227     303 .. 0.58

  Alignments for each domain:
  == domain 1  score: 21.4 bits;  conditional E-value: 6.9e-08
                 ESTTSTHHHHH.HHHHHHH-S.................-EEEEESSHHHHHHHHHHGGGGTGG....GEEEESSS-B--.........-SEEEEEHHHH CS
      ResIII  31 maTGtGKTlva.aklierllkkgkee............kflflvprkslleqtleefkkflseaykeigkkvsgdkkka..kekdstnkkilvttiqsl 114
                  +TG+GKT    + +  ++l++ + +            ++l+l+p+++l +q ++e +kf++ +      +v g  +++   ++ +  +++lv+t  +l
  KOO24102.1  45 TPTGSGKTGAFlFPTLHQMLHALDAQpdpgvsqgraepRALILAPTRELANQIMTETRKFAQRTPIH-AYVVYGGADIRqqMNQLDRGCHLLVATPGRL 142
                 69******988788888888888888999*************************8888888877543.333333333333455668999********** PP

                 HHTH........HHHTTT-SEEEEETGGGTTS....TTTHHHHHT-..--...SEEEEEESS-S CS
      ResIII 115 dadseeeeeeseellrdrfdviiiDEaHrlgak...kswreilekf..ke...avllglTATpe 170
                          e+ + + +r   +i DEa r+ ++    ++r+++e    ++      l ++AT++
  KOO24102.1 143 CDLV-----ERGKVSLHRVHHLILDEADRMLDMgfePQIRRVVEREgmPPagqRQTLMFSATFP 201
                 9999.....888999999999********99996655888875543222255577888999976 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 0.77
                 -EEEEESSHHHHHHHHH CS
      ResIII  56 kflflvprkslleqtle 72 
                 +++++v +k   eq++e
  KOO24102.1 256 RTIIFVETKRAAEQLEE 272
                 55666666666666543 PP

>> AAA_19  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.9   0.0    0.0013       3.8      20     116 ..      48     170 ..      44     185 .. 0.63
   2 !    9.1   0.1    0.0005       1.5      42      75 ..     245     287 ..     205     377 .. 0.78

  Alignments for each domain:
  == domain 1  score: 7.9 bits;  conditional E-value: 0.0013
      AAA_19  20 GtGKTrv.lkhivallvelggvkp..........eeillvaftgrAakelrerlaalgaeatTiHrlalldfddlltealelle............... 92 
                 G+GKT   l   ++ ++++ + +p           + l++a+t+  a+++ +++++  a+ t iH+  + +  d+  ++++ l+               
  KOO24102.1  48 GSGKTGAfLFPTLHQMLHALDAQPdpgvsqgraePRALILAPTRELANQIMTETRK-FAQRTPIHAYVVYGGADIR-QQMNQLDrgchllvatpgrlcd 144
                 7777743134444444444444455667777777889********99999999955.5666779988553333333.3444445566677777788887 PP

      AAA_19  93 .eaeeekklqeeellivDEfq.dvde 116
                   ++ +  l++  +li DE+  ++d 
  KOO24102.1 145 lVERGKVSLHRVHHLILDEADrMLDM 170
                 63345566745559999998525555 PP

  == domain 2  score: 9.1 bits;  conditional E-value: 0.0005
      AAA_19  42 p.........eeillvaftgrAakelrerlaalgaeatTiHrl 75 
                 +          + ++   t+rAa++l+e l+   ++at iH+ 
  KOO24102.1 245 VlleqlaactGRTIIFVETKRAAEQLEEFLHRSSVPATSIHGD 287
                 344445445566777788***********************64 PP

>> UTP25  Utp25, U3 small nucleolar RNA-associated SSU processome protein 25
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.3   0.0    0.0012       3.5      68      99 ..      74     105 ..      60     112 .. 0.81
   2 ?   -3.5   0.1       1.1   3.3e+03     246     264 ..     191     209 ..     189     214 .. 0.83
   3 ?    4.1   0.0    0.0054        16     328     414 ..     252     336 ..     242     358 .. 0.86

  Alignments for each domain:
  == domain 1  score: 6.3 bits;  conditional E-value: 0.0012
       UTP25  68 lrdqgftrpkvLillptreaalevvelllkll 99 
                    qg   p+ Lil+ptre a +++++  k++
  KOO24102.1  74 GVSQGRAEPRALILAPTRELANQIMTETRKFA 105
                 5679999*****************99876665 PP

  == domain 2  score: -3.5 bits;  conditional E-value: 1.1
       UTP25 246 RQtlvfssyetpeinslfn 264
                 RQtl+fs+    ei+ l +
  KOO24102.1 191 RQTLMFSATFPKEIQRLAS 209
                 9******999988888765 PP

  == domain 3  score: 4.1 bits;  conditional E-value: 0.0054
       UTP25 328 skssgiliyipsyfdfvrvrnylkeekvsfaaiseysskkevsraRelFfkgkkkvlLyteRlhffrRykikgvkkvilYklPenpe 414
                 + +++++i++ +     +++++l++++v  ++i+   s++e ++a  +F +g+ +vl+ t+ +   r  ++ +  +vi Y+lP + +
  KOO24102.1 252 ACTGRTIIFVETKRAAEQLEEFLHRSSVPATSIHGDRSQREREQALLAFRRGSPSVLVATDVAA--RGLDVPECMHVINYELPREIT 336
                 467899******************************************************9775..778888888888888887655 PP

>> CMS1  U3-containing 90S pre-ribosomal complex subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.1   0.0   0.00025      0.75     180     209 ..     134     163 ..      75     168 .. 0.77
   2 ?   -0.4   0.0       0.2   5.9e+02     124     144 ..     302     322 ..     293     328 .. 0.87

  Alignments for each domain:
  == domain 1  score: 9.1 bits;  conditional E-value: 0.00025
        CMS1 180 iavGtpgRildLleeeslsvdeLkrivlDa 209
                 + v tpgR+ dL+e + +s+  +++++lD 
  KOO24102.1 134 LLVATPGRLCDLVERGKVSLHRVHHLILDE 163
                 4588************************96 PP

  == domain 2  score: -0.4 bits;  conditional E-value: 0.2
        CMS1 124 ngsPelLvltlaalRaaDlar 144
                  gsP +Lv t  a R  D+  
  KOO24102.1 302 RGSPSVLVATDVAARGLDVPE 322
                 69***************9965 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (416 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       480  (0.0267723); expected 358.6 (0.02)
Passed bias filter:                      441  (0.024597); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.48u 0.21s 00:00:00.69 Elapsed: 00:00:00.36
# Mc/sec: 3447.26
//
Query:       KOO24103.1  [L=804]
Description: thymidylate kinase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.8e-15   56.5   0.0    6.8e-15   55.2   0.0    1.7  1  Thymidylate_kin  Thymidylate kinase


Domain annotation for each model (and alignments):
>> Thymidylate_kin  Thymidylate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.2   0.0   3.8e-19   6.8e-15       1     140 [.     583     733 ..     583     761 .. 0.81

  Alignments for each domain:
  == domain 1  score: 55.2 bits;  conditional E-value: 3.8e-19
                      EEESTTSSHHHHHHHHHHHHHHTTE..EEEESSSTTSHHHHHHHHHHH....TCS---HHHHHHHHHHHHHHTTHHHHHHHHHTT-EEEEES-H CS
  Thymidylate_kin   1 iEGlDGaGKttqaellkerlkeegik.vvltrepggteiGekirelll....keeeleeqteallfaadriehleekikpalkqgktvivdRyl 89 
                      iEG DGaGK tq+++l erl++eg+    l  + +    G++ir ll+    + + ++++ +a l+a +r   ++ ++ + lk+g  vi+dRy+
       KOO24103.1 583 IEGGDGAGKQTQSRMLLERLRAEGYPcSTLDYPHDAALHGKLIRTLLSgakgDIKSVNPLLFASLYAQNR-ADTAPLLSAWLKRGHNVILDRYV 675
                      8***********************************************9655566677777*********.78888999*************** PP

                      HHHHHHHHTTTTTTCHHHHHHGGGTTS.......E-SEEEEEESSHHHHHTSCCTTSS CS
  Thymidylate_kin  90 fSslaYqgakegvdldlvlslnedvll.......kPdltflldvdpevalkRlakrde 140
                        +   q+ k   d +  l  +  ++        + + +++ld++pe+alk +a  ++
       KOO24103.1 676 EANFGHQASKLPSDERPALIAQLAAFEhdwldlpRAHRVVYLDLPPEEALKAMALDAS 733
                      9998888876666655444444444433455645557789999999999988776665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (804 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       794  (0.0442858); expected 358.6 (0.02)
Passed bias filter:                      463  (0.0258241); expected 358.6 (0.02)
Passed Vit filter:                        49  (0.002733); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.62u 0.28s 00:00:00.90 Elapsed: 00:00:00.39
# Mc/sec: 6107.12
//
Query:       KOO24104.1  [L=285]
Description: hypothetical protein Ctob_001628 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    7.8e-58  195.8   5.4    8.3e-58  195.7   4.1    1.6  2  adh_short_C2  Enoyl-(Acyl carrier protein) reductase
    7.5e-56  188.7   6.0    9.2e-56  188.4   6.0    1.1  1  adh_short     short chain dehydrogenase
      6e-17   62.1   1.7      6e-17   62.1   1.7    1.9  2  KR            KR domain
  ------ inclusion threshold ------
       0.18   12.2   0.0       0.36   11.2   0.0    1.6  1  Radical_SAM   Radical SAM superfamily


Domain annotation for each model (and alignments):
>> adh_short_C2  Enoyl-(Acyl carrier protein) reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.0      0.25   1.1e+03     104     125 ..      21      42 ..      16      47 .. 0.80
   2 !  195.7   4.1   1.8e-61   8.3e-58       3     233 ..      47     280 ..      43     281 .. 0.93

  Alignments for each domain:
  == domain 1  score: -1.1 bits;  conditional E-value: 0.25
                   HHHHHHHHHHHHHCTSCCEEEE CS
  adh_short_C2 104 yslfllakaalplmkeggsivn 125
                   +sl+ +++aa p+m+++g +  
    KOO24104.1  21 RSLAVTSRAATPVMEATGPVCI 42 
                   7899999*****9999976554 PP

  == domain 2  score: 195.7 bits;  conditional E-value: 1.8e-61
                   TTSHHHHHHHHHHHTT-EEEEEESSGGH..HHHHHHHHHHTTSEE.EE--TTSHHHHHHHHHHHHHHH.SSEEEEEE-----EGCSS-GGGH-HHHH CS
  adh_short_C2   3 asgIGraiAkalaeeGaevvltdlneea..kkrveelaeelgaev.lecDVtdeeqvealveevvekf.gklDilvnnagiapklkgpfletsreef 95 
                    +g+GraiA al +e ++vv+ ++  +a  +k vee+++ +g  v +++D   +e +e+l+++++ek+ + + +lvnnagi+++  + +l ++ +++
    KOO24104.1  47 SRGLGRAIALALGKEKCKVVVNYAASAAaaEKVVEEIKAMGGDGVaVQADTGTQEGIEKLFKATAEKWdEPVGVLVNNAGITRD--TLVLRMKPSQW 141
                   59**********************9999855666666666555566**********************889*************..*********** PP

                   HHHHHHHTHHHHHHHHHHHH.HCTSC.CEEEEEEEGGGTSBSTTTTHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEE--BHCTGGGGSTTHHHHHH CS
  adh_short_C2  96 draldvnlyslfllakaalp.lmkeg.gsivnlssvgaervvpnynaygaaKaalealtrylAvelgpkgiRvNavspgpikTlaasgikgfdelle 190
                   ++++dvnl+++f+ ++aa + +mk++ g+i+n++sv ++ +  +++ y+aaK++++a+t ++A+elg++g++vNa++pg+i+ +++++++  +e+ +
    KOO24104.1 142 QEVIDVNLNGVFYASQAATKiMMKARkGRIINTASVVGRFGNIGQANYAAAKGGVIAMTMSMARELGSRGVTVNAIAPGFIESDMTAELP--KEIVD 236
                   ********************7777667**************************************************************9..9**** PP

                   HHHHHSTTSS-B-HHHHHHHHHHHCSG.GGTT--SEEEEESTTG CS
  adh_short_C2 191 elearaplgrlgtpeevaeaalfLasd.easyitGqtlvvDgGl 233
                    + +++plgr+g+p+eva ++ +La d  a yitG+ + vDgG+
    KOO24104.1 237 GVMKNIPLGRFGKPDEVAGLVKYLALDpSALYITGHCINVDGGI 280
                   ************************98725569***********6 PP

>> adh_short  short chain dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  188.4   6.0   2.1e-59   9.2e-56       2     192 ..      40     232 ..      39     235 .. 0.98

  Alignments for each domain:
  == domain 1  score: 188.4 bits;  conditional E-value: 2.1e-59
                 EEEEESTTSHHHHHHHHHHHHTT-EEEE.EESCHHHHHHHHHHHHHTTSEEEEEE-TTTSHHHHHHHHHHHHHHH.SSESEEEE---SS--SSGGGCSH CS
   adh_short   2 vvlvtGassGIGraiakelakeGakvvv.vdrseekleevakelkeegakalaiqvDvtdreevealvekavkkl.gkldvLvnNAGitgsgpfselse 98 
                 v +vtG+s+G+Graia +l ke +kvvv ++ s++++e+v++e+k+ g + +a+q+D  ++e +e+l+++ ++k+ +++ vLvnNAGit+++ + +++ 
  KOO24104.1  40 VCIVTGGSRGLGRAIALALGKEKCKVVVnYAASAAAAEKVVEEIKAMGGDGVAVQADTGTQEGIEKLFKATAEKWdEPVGVLVNNAGITRDTLVLRMKP 138
                 679************************************************************************99********************** PP

                 HHHHHHHHHHTHHHHHHHHHHHHHHHHCTTEEEEEEEEGGGTSB-TTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBSSHHHHHHCT CS
   adh_short  99 eewervievNltgvflltravlpamlkqssGrIvnvsSvagkvpvagvaaYsAsKaavagltrslakelaptgirvnavaPGlvdTdmakelre 192
                 ++w++vi+vNl+gvf +++a+++ m+k+++GrI+n++Sv+g+ +++g+a Y+A+K++v+++t+s+a+el ++g++vna+aPG++++dm++el +
  KOO24104.1 139 SQWQEVIDVNLNGVFYASQAATKIMMKARKGRIINTASVVGRFGNIGQANYAAAKGGVIAMTMSMARELGSRGVTVNAIAPGFIESDMTAELPK 232
                 *****************************************************************************************99866 PP

>> KR  KR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.0   0.1      0.16   7.2e+02      12      37 ..       7      32 ..       3      38 .. 0.81
   2 !   62.1   1.7   1.3e-20     6e-17       3     174 ..      41     215 ..      39     220 .. 0.87

  Alignments for each domain:
  == domain 1  score: -0.0 bits;  conditional E-value: 0.16
                HHHHHHHHHHHHHS-EEEEE-SS..- CS
          KR 12 LGlelarwlaekgarhlvllsRsaaa 37
                LGl++a   +  g r+l+++sR a++
  KOO24104.1  7 LGLSVAARGYTFGSRSLAVTSRAATP 32
                888888888999**********9654 PP

  == domain 2  score: 62.1 bits;  conditional E-value: 1.3e-20
                 EEEETTTSHHHHHHHHHHHHHHS-EEEEE-SS..--HHHHHHHHHHHHTT-EEEE----TT-HHHHHHHHHHHHHHS.S---EEEE---------TTT- CS
          KR   3 ylitGGlGgLGlelarwlaekgarhlvllsRsaaadedskaliaelealgaevevvaaDvsdkdavealleeikaee.ppikGvihaAgvlrdklleem 100
                  ++tGG  gLG+++a  l ++  + +v  + sa   +++++ ++e++a+g +  +v+aD   ++ +e+l+++  ++  +p+   ++ Ag++rd+l+ +m
  KOO24104.1  41 CIVTGGSRGLGRAIALALGKEKCKVVVNYAASA---AAAEKVVEEIKAMGGDGVAVQADTGTQEGIEKLFKATAEKWdEPVGVLVNNAGITRDTLVLRM 136
                 58*****************99999999999993...45666899999999999999***************99988889**99**************** PP

                 -HHHHHHHHTTTTHHHHHHHHHTTT....S--SEEEEEEEHHHHH--TT-HHHHHHHH.HHHHHHHHHHHHHHTEEEEE CS
          KR 101 taedleqvlapKvkGawnLhelled....esldffvlfSSiagllgsagqanYaaaNa.flDalaeyrrsqglpavsin 174
                 + +++++v+   ++G+    ++ ++     +   ++ ++S+ g +g+ gqanYaaa   ++   ++  r++g ++v++n
  KOO24104.1 137 KPSQWQEVIDVNLNGVFYASQAATKimmkARKGRIINTASVVGRFGNIGQANYAAAKGgVIAMTMSMARELGSRGVTVN 215
                 ***************99999998885554666679*********************76144445666677787777776 PP

>> Radical_SAM  Radical SAM superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0     8e-05      0.36      74     131 ..      57     115 ..      33     148 .. 0.76

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 8e-05
                  CCCTEEEEEEECSSCHG...HHHHHHHHHTT-SEEEEEEBSSSHHHHHHHHTCTSHHHHHH CS
                  xxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Radical_SAM  74 avpgiritvetngtlpd...eeklerllelgvdrvslgleaaddekvlklmnrghtfeevl 131
                  a  + ++ v++n+       e+++e+++ +g d v++ +++++ e + kl++   t e++ 
   KOO24104.1  57 ALGKEKCKVVVNYAASAaaaEKVVEEIKAMGGDGVAVQADTGTQEGIEKLFK--ATAEKWD 115
                  33455666666666655777*************************8888884..5555544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (285 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       502  (0.0279993); expected 358.6 (0.02)
Passed bias filter:                      340  (0.0189637); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.42u 0.23s 00:00:00.65 Elapsed: 00:00:00.37
# Mc/sec: 2283.34
//
Query:       KOO24105.1  [L=152]
Description: hypothetical protein Ctob_001624, partial [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.026   14.3   0.0      0.039   13.8   0.0    1.3  1  RRM_1     RNA recognition motif. (a.k.a. RRM, RBD, or RNP dom


Domain annotation for each model (and alignments):
>> RRM_1  RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.0   2.2e-06     0.039       6      57 ..      35      81 ..      30      83 .. 0.93

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 2.2e-06
                ETTTSSHHHHHHHHHTTSCEEEEEEEEETTTSEEEEEEEEESSHHHHHHHHH CS
       RRM_1  6 LppdvteeeLkelFskfGpiksiklvrdetgkskgfafVeFeskedAekAle 57
                L ++++e+ +++ +  fG i+s++l+r     s  +  V+F+ +e+A +A++
  KOO24105.1 35 LKSNADESVVRAALIRFGTIESCDLSR-----SPAIVRVRFALHESAVAAKD 81
                78999**********************.....8*****************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (152 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       293  (0.0163422); expected 358.6 (0.02)
Passed bias filter:                      239  (0.0133304); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.27s 00:00:00.64 Elapsed: 00:00:00.42
# Mc/sec: 1090.10
//
Query:       KOO24106.1  [L=619]
Description: hypothetical protein Ctob_001632 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.78    9.9   3.7       0.32   11.1   0.4    1.9  2  bZIP_1    bZIP transcription factor
       0.92    9.3   2.3        1.3    8.9   0.3    2.0  2  DivIC     Septum formation initiator
        1.7    8.6  13.2        0.9    9.5  10.9    1.7  2  DUF2076   Uncharacterized protein conserved in bacteria (DUF2


Domain annotation for each model (and alignments):
>> bZIP_1  bZIP transcription factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.2      0.72   4.3e+03      30      41 ..     110     121 ..     107     123 .. 0.82
   2 ?   11.1   0.4   5.3e-05      0.32      22      50 ..     165     193 ..     164     195 .. 0.95

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 0.72
                 HHHHHHHHHHHH CS
      bZIP_1  30 eLerrvkaLeke 41 
                 +Le++ ++L+ +
  KOO24106.1 110 QLEQKLEVLQRQ 121
                 899999999865 PP

  == domain 2  score: 11.1 bits;  conditional E-value: 5.3e-05
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
      bZIP_1  22 qRKqaeieeLerrvkaLekeNksLksele 50 
                 +RK ++i++L+   + Lek N +L+ +l+
  KOO24106.1 165 KRKGQRIAQLQALIDDLEKDNRALRARLS 193
                 7************************9986 PP

>> DivIC  Septum formation initiator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.1      0.31   1.9e+03      12      33 ..     101     122 ..      99     123 .. 0.82
   2 ?    8.9   0.3   0.00021       1.3      24      59 ..     155     190 ..     150     193 .. 0.81

  Alignments for each domain:
  == domain 1  score: -1.3 bits;  conditional E-value: 0.31
                 XXXXXXHHHHHHHHHHHHHHHH CS
       DivIC  12 gkkgllaykqlkqeiaalqael 33 
                 g++g++   ql+q+++ lq+++
  KOO24106.1 101 GAYGVQHSLQLEQKLEVLQRQV 122
                 6788888899999999999875 PP

  == domain 2  score: 8.9 bits;  conditional E-value: 0.00021
                 HHHHHHHHHHHHHHHHHHHHHHHHCC-XXXXXXXXX CS
       DivIC  24 qeiaalqaelaklkaeneeLeaevkdLksdedyiee 59 
                  ++a l  e +++ +++++L+a ++dL++d  ++++
  KOO24106.1 155 VQVAMLRGESKRKGQRIAQLQALIDDLEKDNRALRA 190
                 688888888899999999999999999888877765 PP

>> DUF2076  Uncharacterized protein conserved in bacteria (DUF2076)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5  10.9   0.00015       0.9     123     188 ..      19      97 ..       3     158 .. 0.68
   2 ?   -2.4   0.0      0.65   3.9e+03      62      80 ..     169     187 ..     155     199 .. 0.58

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 0.00015
     DUF2076 123 eqyaaqpgyaqqqaqpqygqpaaapq.........p..ggGggFLgg..AlqtAAGVaGGvllangleslfsgksgeeg 188
                    ++q   aq q+qpq  ++++++          +  ggG g+ +g  Al   AG +GG++l+++l + f g+ g  g
  KOO24106.1  19 PVVQGQLPVAQGQQQPQVVYQQQPNVvvvgggygyGpyGGGYGYDSGglALGVGAGLVGGMMLGSALDGGFDGGYGFDG 97 
                 233444455567788886665554448887766551567777887775588899***************9999765444 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 0.65
     DUF2076  62 ariqeLeaqlqqlqqqaqe 80 
                 +ri++L+a +++l++++++
  KOO24106.1 169 QRIAQLQALIDDLEKDNRA 187
                 5555555555444443333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (619 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       659  (0.0367561); expected 358.6 (0.02)
Passed bias filter:                      512  (0.0285571); expected 358.6 (0.02)
Passed Vit filter:                        77  (0.00429472); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.61u 0.29s 00:00:00.89 Elapsed: 00:00:00.44
# Mc/sec: 4273.21
//
Query:       KOO24107.1  [L=241]
Description: hypothetical protein Ctob_001633, partial [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.2e-08   34.3   9.1        2.2    8.5   0.1    6.2  6  LRR_6          Leucine Rich repeat
     0.0026   18.1   2.0         25    5.5   0.1    3.6  3  LRR_4          Leucine Rich repeats (2 copies)
  ------ inclusion threshold ------
      0.011   15.5   0.2         33    4.3   0.0    4.0  4  LRR_8          Leucine rich repeat
      0.058   14.0   0.0         77    4.4   0.0    3.9  4  LRR_1          Leucine Rich Repeat
      0.069   13.4   0.0         23    5.4   0.0    2.5  2  SpoU_sub_bind  RNA 2'-O ribose methyltransferase substrate bi
      0.079   13.3   1.2        2.3    8.6   0.1    2.7  2  FAM25          FAM25 family
       0.18   12.1   0.0         81    3.5   0.0    3.0  3  Peripla_BP_3   Periplasmic binding protein-like domain


Domain annotation for each model (and alignments):
>> LRR_6  Leucine Rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.0         2   5.2e+03      14      24 .]      16      26 ..      15      26 .. 0.87
   2 !    8.5   0.0    0.0009       2.3       5      24 .]      35      54 ..      34      54 .. 0.95
   3 ?    2.2   0.0     0.091   2.3e+02       5      12 ..      66      73 ..      62      73 .. 0.84
   4 !    7.8   0.2    0.0014       3.7       5      24 .]      98     117 ..      95     117 .. 0.95
   5 !    7.5   0.0    0.0018       4.6       1      13 [.     122     134 ..     122     134 .. 0.94
   6 !    8.5   0.1   0.00086       2.2       5      23 ..     160     178 ..     157     179 .. 0.89

  Alignments for each domain:
  == domain 1  score: -2.0 bits;  conditional E-value: 2
       LRR_6 14 dIgDeGaeaLa 24
                +Ig  G++ +a
  KOO24107.1 16 NIGVPGGMLIA 26
                69999**9997 PP

  == domain 2  score: 8.5 bits;  conditional E-value: 0.0009
       LRR_6  5 LteLdLsgNdIgDeGaeaLa 24
                Lt+ +L++N++g eG +a++
  KOO24107.1 35 LTKISLAFNELGEEGTKAIC 54
                899*************9998 PP

  == domain 3  score: 2.2 bits;  conditional E-value: 0.091
       LRR_6  5 LteLdLsg 12
                L+eLdLsg
  KOO24107.1 66 LKELDLSG 73
                9*****96 PP

  == domain 4  score: 7.8 bits;  conditional E-value: 0.0014
       LRR_6   5 LteLdLsgNdIgDeGaeaLa 24 
                 Lt+++L+ N++g eG +a++
  KOO24107.1  98 LTKVSLALNELGEEGTKAIC 117
                 99**************9998 PP

  == domain 5  score: 7.5 bits;  conditional E-value: 0.0018
       LRR_6   1 snthLteLdLsgN 13 
                 +n +L+eL++sgN
  KOO24107.1 122 QNKTLKELEISGN 134
                 599*********9 PP

  == domain 6  score: 8.5 bits;  conditional E-value: 0.00086
       LRR_6   5 LteLdLsgNdIgDeGaeaL 23 
                 Lt+ +LsgN++  +Ga+  
  KOO24107.1 160 LTSINLSGNQLWAAGAKHV 178
                 9**********99999876 PP

>> LRR_4  Leucine Rich repeats (2 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.5   0.1    0.0096        25       3      33 ..      35      74 ..      34      81 .. 0.71
   2 ?    5.4   0.1      0.01        26       3      33 ..      98     134 ..      97     143 .. 0.72
   3 ?    4.6   0.0     0.018        47      25      36 ..     160     170 ..     157     174 .. 0.65

  Alignments for each domain:
  == domain 1  score: 5.5 bits;  conditional E-value: 0.0096
                --EEE--SS---E-S-......HHH-TT...--EEE-.-S CS
       LRR_4  3 LevLdLsnNqltdipl......leklpn...LkeLdLsgN 33
                L++++L+ N l + +       l+++++   LkeLdLsg+
  KOO24107.1 35 LTKISLAFNELGEEGTkaiceaLKQNKQnkiLKELDLSGF 74
                8899999999998777776433333444678******986 PP

  == domain 2  score: 5.4 bits;  conditional E-value: 0.01
                 --EEE--SS---E-S-......HHH-TT--EEE-.-S CS
       LRR_4   3 LevLdLsnNqltdipl......leklpnLkeLdLsgN 33 
                 L++++L+ N l + +       le+++ LkeL +sgN
  KOO24107.1  98 LTKVSLALNELGEEGTkaiceaLEQNKTLKELEISGN 134
                 6667777557776555666555668999******998 PP

  == domain 3  score: 4.6 bits;  conditional E-value: 0.018
                 --EEE-.-S--- CS
       LRR_4  25 LkeLdLsgNnli 36 
                 L++++LsgN ++
  KOO24107.1 160 LTSINLSGN-QL 170
                 566666666.44 PP

>> LRR_8  Leucine rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.0      0.54   1.4e+03       3      13 ..      35      45 ..      32      51 .. 0.67
   2 ?    3.5   0.0     0.024        61      23      41 ..      62      80 ..      57      96 .. 0.81
   3 ?    2.0   0.1      0.07   1.8e+02      20      35 ..     119     134 ..      97     140 .. 0.78
   4 ?    4.3   0.0     0.013        33      51      61 .]     160     170 ..     156     181 .. 0.67

  Alignments for each domain:
  == domain 1  score: -0.8 bits;  conditional E-value: 0.54
                -SEEE-TTS-- CS
       LRR_8  3 LtsLdLsnNrl 13
                Lt+++L +N l
  KOO24107.1 35 LTKISLAFNEL 45
                56666666655 PP

  == domain 2  score: 3.5 bits;  conditional E-value: 0.024
                T-TT--EEE--SS---GGG CS
       LRR_8 23 glsnLkvLdLsnNllttls 41
                +++ Lk+LdLs    t + 
  KOO24107.1 62 QNKILKELDLSGFMKTNIG 80
                5789*******99888884 PP

  == domain 3  score: 2.0 bits;  conditional E-value: 0.07
                 SSTT-TT--EEE--SS CS
       LRR_8  20 aFkglsnLkvLdLsnN 35 
                 a ++++ Lk+L++s N
  KOO24107.1 119 ALEQNKTLKELEISGN 134
                 4455677788888777 PP

  == domain 4  score: 4.3 bits;  conditional E-value: 0.013
                 -.EEE--SS-- CS
       LRR_8  51 LrsLdLsgNrL 61 
                 L+s++LsgN+L
  KOO24107.1 160 LTSINLSGNQL 170
                 44555555544 PP

>> LRR_1  Leucine Rich Repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.0       4.3   1.1e+04       2      12 ..      35      45 ..      34      54 .. 0.78
   2 ?    1.0   0.1      0.42   1.1e+03       2       9 ..      66      73 ..      66      73 .. 0.90
   3 ?    3.0   0.0     0.089   2.3e+02       2      10 ..     126     134 ..     125     146 .. 0.72
   4 ?    4.4   0.0      0.03        77       2      12 ..     160     170 ..     159     187 .. 0.86

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 4.3
       LRR_1  2 LrhLdLsnnpl 12
                L+++ L  n l
  KOO24107.1 35 LTKISLAFNEL 45
                78899999988 PP

  == domain 2  score: 1.0 bits;  conditional E-value: 0.42
       LRR_1  2 LrhLdLsn 9 
                L++LdLs+
  KOO24107.1 66 LKELDLSG 73
                9*****96 PP

  == domain 3  score: 3.0 bits;  conditional E-value: 0.089
       LRR_1   2 LrhLdLsnn 10 
                 L++L +s+n
  KOO24107.1 126 LKELEISGN 134
                 99**88776 PP

  == domain 4  score: 4.4 bits;  conditional E-value: 0.03
       LRR_1   2 LrhLdLsnnpl 12 
                 L++++Ls+n+l
  KOO24107.1 160 LTSINLSGNQL 170
                 89*******98 PP

>> SpoU_sub_bind  RNA 2'-O ribose methyltransferase substrate binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.4   0.0    0.0088        23       3      18 ..      48      65 ..      48      72 .. 0.81
   2 ?    5.3   0.0    0.0092        24       3      23 ..     111     131 ..     111     142 .. 0.86

  Alignments for each domain:
  == domain 1  score: 5.4 bits;  conditional E-value: 0.0088
  SpoU_sub_bind  3 yGlhaVleaLksgrr..i 18
                   +G++a+ eaLk++++  i
     KOO24107.1 48 EGTKAICEALKQNKQnkI 65
                   8***********976564 PP

  == domain 2  score: 5.3 bits;  conditional E-value: 0.0092
  SpoU_sub_bind   3 yGlhaVleaLksgrriekllv 23 
                    +G++a+ eaL++++ +++l +
     KOO24107.1 111 EGTKAICEALEQNKTLKELEI 131
                    8************99998855 PP

>> FAM25  FAM25 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.6   0.1   0.00089       2.3      18      42 ..      47      69 ..      42      96 .. 0.73
   2 ?    2.9   0.1     0.053   1.4e+02      18      36 ..     110     128 ..     101     158 .. 0.69

  Alignments for each domain:
  == domain 1  score: 8.6 bits;  conditional E-value: 0.00089
       FAM25 18 eaGEKAiadalKkAqesgekvvKev 42
                e G KAi +alK+ +   +k++Ke 
  KOO24107.1 47 EEGTKAICEALKQNK--QNKILKEL 69
                6799********655..68999985 PP

  == domain 2  score: 2.9 bits;  conditional E-value: 0.053
       FAM25  18 eaGEKAiadalKkAqesge 36 
                 e G KAi +al + +   e
  KOO24107.1 110 EEGTKAICEALEQNKTLKE 128
                 7899*****9988776555 PP

>> Peripla_BP_3  Periplasmic binding protein-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.7   0.0     0.055   1.4e+02     121     149 ..      34      62 ..      17      71 .. 0.77
   2 ?    3.5   0.0     0.032        81     121     150 ..      97     126 ..      88     134 .. 0.88
   3 ?    2.1   0.0     0.086   2.2e+02      27      84 ..     169     234 ..     152     239 .. 0.55

  Alignments for each domain:
  == domain 1  score: 2.7 bits;  conditional E-value: 0.055
                   --EEEE--HHHHHHHHHHHHHHHHTT--- CS
  Peripla_BP_3 121 plTtvrqpleelGraaaellldllegeka 149
                    lT +++++ elG++  +++++ l+++k+
    KOO24107.1  34 GLTKISLAFNELGEEGTKAICEALKQNKQ 62 
                   36**********************65554 PP

  == domain 2  score: 3.5 bits;  conditional E-value: 0.032
                   --EEEE--HHHHHHHHHHHHHHHHTT---S CS
  Peripla_BP_3 121 plTtvrqpleelGraaaellldllegekap 150
                    lT v+++l elG++  +++++ le++k+ 
    KOO24107.1  97 GLTKVSLALNELGEEGTKAICEALEQNKTL 126
                   59**********************888765 PP

  == domain 3  score: 2.1 bits;  conditional E-value: 0.086
                   HHHHHHHHHHHTTSSS-EEEEE-S-SS-SSHHHHH........HHH....HHCC..-SEEEEESSCC CS
  Peripla_BP_3  27 derergfrqaleelglplnetvvaaddpaaaaaaraalll...qal....klaa..lPtAviaasDe 84 
                   +++ +g++++++ lg++ + t ++   + a++   + + +   q       +++  +P+A++ asD 
    KOO24107.1 169 QLWAAGAKHVAKMLGVNGALTSAKMLAKVAKQKGISLCGIqrdQ-TtadfSHKNlkPPDAILLASDL 234
                   55555555555555555444444444333333322222333321.12333333466899**999996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (241 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       552  (0.0307881); expected 358.6 (0.02)
Passed bias filter:                      430  (0.0239835); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.44u 0.24s 00:00:00.68 Elapsed: 00:00:00.39
# Mc/sec: 1848.47
//
Query:       KOO24108.1  [L=461]
Description: horma domain-containing protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.2e-41  142.6   0.0    1.7e-41  142.2   0.0    1.2  1  HORMA          HORMA domain
  ------ inclusion threshold ------
      0.022   14.8   1.3       0.14   12.3   1.0    2.5  2  HTH_20         Helix-turn-helix domain
      0.024   14.6   0.3      0.053   13.5   0.3    1.6  1  HTH_Crp_2      Crp-like helix-turn-helix domain
      0.056   13.2   0.3       0.13   12.1   0.3    1.6  1  HTH_IclR       IclR helix-turn-helix domain
      0.064   13.1   1.8      0.093   12.6   0.3    2.1  2  MarR_2         MarR family
       0.39   10.7   5.0        1.7    8.6   0.8    2.5  2  RNA_pol_Rpo13  RNA polymerase Rpo13 subunit HTH domain


Domain annotation for each model (and alignments):
>> HORMA  HORMA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  142.2   0.0   5.6e-45   1.7e-41       1     212 []      19     231 ..      19     231 .. 0.89

  Alignments for each domain:
  == domain 1  score: 142.2 bits;  conditional E-value: 5.6e-45
       HORMA   1 SlelvkellaasissilylRglfpedaFedrklsglklkiLl.rgsseeadrlldwLekGvfdaLekkyLealiltIykdkdepenvlEsYtFsfkytk 98 
                 Sl+++++ll++ +s+ily Rg++pe++Fe+++++g++++ L  ++ s++a++l++w+ekG+f+aL+k+ Le+ +l+ ++d+   ++vlE++ +s++ + 
  KOO24108.1  19 SLAVIRNLLRLNVSQILYARGCLPESDFETKDVEGMRVQSLGgPEISKTAETLIAWIEKGIFSALSKRFLEKAVLCFSEDEAG-KHVLEAWVLSIAWEV 116
                 899**************************************52444599****************************999888.68***********98 PP

       HORMA  99 sggkedvssskletkkknleslsldek.eeekkktekevkkelealirrlitltqsLpplpekryltmkLlytdd.tPedyePpgFkaaaeeedstrke 195
                 ++++ ++  ++   +k++ ++  l+   e + k+t++ v+++   ++r++  +  +Lp lp ++++ m+Lly d  tP+dyeP+gF++aa ++++++ +
  KOO24108.1 117 DEQGVEKPTITFGPDKRRAAA--LTGVlEPQAKVTKARVRQMSSLMLRQISLMLCTLPALPSNHFVFMRLLYRDGlTPADYEPSGFESAAADDRASLCF 213
                 777754444444444433333..33336889999***************************************************************** PP

       HORMA 196 neepekvsvG.kvdtghh 212
                   +p++++v   v tghh
  KOO24108.1 214 LTKPMQLTVAqPVATGHH 231
                 *********966999999 PP

>> HTH_20  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.0      0.97   2.9e+03       6      33 ..     227     255 ..     226     268 .. 0.79
   2 ?   12.3   1.0   4.5e-05      0.14      21      59 ..     306     344 ..     297     346 .. 0.88

  Alignments for each domain:
  == domain 1  score: -1.6 bits;  conditional E-value: 0.97
                 HHS-.HHHHHHHHHHSTCTTB-HHHHHHH CS
      HTH_20   6 ALah.PvRrrilraLaraegltaselaer 33 
                 A++h   R+ + + + +++++ +s l++ 
  KOO24108.1 227 ATGHhSYRMHVVSSFLEDDAFAPSGLKRK 255
                 56666999999999989999988888775 PP

  == domain 2  score: 12.3 bits;  conditional E-value: 4.5e-05
                 TCTTB-HHHHHHHHTS-HHHHHHHHHHHHHCTTEEEECT CS
      HTH_20  21 raegltaselaerldlskntlsyHLrvLeeagLvevvre 59 
                 +++++t  +la++l++s++ + + L+vLe+  L++  r+
  KOO24108.1 306 EGAPFTSVALARELGCSRAGAERVLHVLERERLLTEFRP 344
                 679***************************999987666 PP

>> HTH_Crp_2  Crp-like helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.3   1.8e-05     0.053       4      54 ..     297     343 ..     294     354 .. 0.79

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 1.8e-05
                 HHHHHHHHCTTTCEEEEEHHHHHHHHHTTSSHHHHHHHHHHHHHTTSEE.ET CS
   HTH_Crp_2   4 ArfLlrlaeraggeielpltqeelAsmlGltretvsrilseLkreglis.rg 54 
                 Ar L++ +e  +g    p+t   lA+ lG +r    r+l+ L+re l++  +
  KOO24108.1 297 ARRLVEEEE--EG---APFTSVALARELGCSRAGAERVLHVLERERLLTeFR 343
                 677776433..33...799****************************99534 PP

>> HTH_IclR  IclR helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.3   4.4e-05      0.13      20      49 ..     311     340 ..     300     341 .. 0.86

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 4.4e-05
                 BHHHHHHHHTS-HHHHHHHHHHHHHTTSEE CS
    HTH_IclR  20 tlselArrtglpkStvhRlLqtLvelGyve 49 
                 t   lAr++g +++ + R L+ L+++++++
  KOO24108.1 311 TSVALARELGCSRAGAERVLHVLERERLLT 340
                 6668***********************996 PP

>> MarR_2  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.1       2.3   6.9e+03       4      27 ..      13      34 ..      13      35 .. 0.75
   2 ?   12.6   0.3   3.1e-05     0.093      19      58 ..     307     346 ..     276     354 .. 0.87

  Alignments for each domain:
  == domain 1  score: -3.0 bits;  conditional E-value: 2.3
                -HHHHHHHHHHHCTTTSEEEHHHH CS
      MarR_2  4 tpaqarvLaaLgrrpgrdltvgel 27
                t ++ + La++++  +  l+v+++
  KOO24108.1 13 TATEVQSLAVIRNLLR--LNVSQI 34
                5678888888888876..888877 PP

  == domain 2  score: 12.6 bits;  conditional E-value: 3.1e-05
                 TSEEEHHHHHHHHTSSHHHHHHHHHHHHHTTSEEEEESSS CS
      MarR_2  19 grdltvgelarrlglsksavsrilkrLvaaGLverrpgpe 58 
                 g ++t  +lar+lg s++ + r+l  L++  L+++ +  e
  KOO24108.1 307 GAPFTSVALARELGCSRAGAERVLHVLERERLLTEFRPRE 346
                 33699***************************98765555 PP

>> RNA_pol_Rpo13  RNA polymerase Rpo13 subunit HTH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.3   0.2     0.026        79       5      15 ..     300     309 ..     298     315 .. 0.77
   2 ?    8.6   0.8   0.00056       1.7       7      22 ..     414     429 ..     410     432 .. 0.71

  Alignments for each domain:
  == domain 1  score: 3.3 bits;  conditional E-value: 0.026
                    XXXXXXXXXXX CS
  RNA_pol_Rpo13   5 tvEEeEEeEvp 15 
                    +vEEeEE+ +p
     KOO24108.1 300 LVEEEEEG-AP 309
                    68999998.54 PP

  == domain 2  score: 8.6 bits;  conditional E-value: 0.00056
                    XXXXXXXXXX....XX- CS
  RNA_pol_Rpo13   7 EEeEEeEvptvdr.vsi 22 
                    +EeEEeE+p+  r vs+
     KOO24108.1 414 AEEEEEEAPA-SRkVSA 429
                    5777777***.666987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (461 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       451  (0.0251548); expected 358.6 (0.02)
Passed bias filter:                      307  (0.0171231); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.48u 0.25s 00:00:00.73 Elapsed: 00:00:00.41
# Mc/sec: 3363.44
//
Query:       KOO24109.1  [L=216]
Description: hypothetical protein Ctob_001631 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.3e-07   29.4   2.4      0.004   16.6   0.5    2.4  2  EF-hand_1       EF hand
    8.1e-06   26.2   0.3      0.046   14.2   0.0    2.3  2  EF-hand_7       EF-hand domain pair
      1e-05   25.1   3.0       0.06   13.3   0.1    2.5  2  EF-hand_6       EF-hand domain
    0.00013   21.3   1.9      0.014   14.9   0.3    2.4  2  EF-hand_5       EF hand
    0.00037   20.3   1.0       0.94    9.4   0.1    2.4  2  EF-hand_8       EF-hand domain pair
  ------ inclusion threshold ------
      0.028   14.7   0.0       0.51   10.7   0.0    2.4  2  EF-hand_9       EF-hand domain
      0.037   14.0   0.5        3.4    7.7   0.2    2.3  2  EF-hand_4       Cytoskeletal-regulatory complex EF hand
       0.21   11.5   0.5       0.61   10.0   0.1    1.9  2  Myb_DNA-bind_7  Myb DNA-binding like


Domain annotation for each model (and alignments):
>> EF-hand_1  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.6   0.1   3.4e-05     0.077       2      27 ..      76     101 ..      75     103 .. 0.89
   2 !   16.6   0.5   1.8e-06     0.004       2      26 ..     110     134 ..     109     137 .. 0.90

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 3.4e-05
                 HHHHHHHHTTTSSSEEEHHHHHHHHH CS
   EF-hand_1   2 lkeiFrefDkDgdGkIdfeEfkellk 27 
                 ++++F  +D+ g G+Id++Ef++l k
  KOO24109.1  76 VEKLFCALDVGGEGTIDLDEFLNLSK 101
                 6899*****************99865 PP

  == domain 2  score: 16.6 bits;  conditional E-value: 1.8e-06
                 HHHHHHHHTTTSSSEEEHHHHHHHH CS
   EF-hand_1   2 lkeiFrefDkDgdGkIdfeEfkell 26 
                 l+ +F   D+Dg+G +d++Ef +l+
  KOO24109.1 110 LRAMFLARDVDGSGDLDLDEFSRLV 134
                 789******************9987 PP

>> EF-hand_7  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.2   0.0     2e-05     0.046      25      69 ..      52      99 ..      11     101 .. 0.81
   2 !   10.2   0.1   0.00036       0.8       2      30 ..     108     136 ..     103     165 .. 0.75

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 2e-05
   EF-hand_7 25 lrllrkifqgagegsklsdee...lellfkefDtdkdGvisfdEFlkl 69
                l+l+ ++ q+  e+  + +++   +e+lf  +D  + G+i++dEFl+l
  KOO24109.1 52 LQLCAAHEQAEAEAAAKARTHkinVEKLFCALDVGGEGTIDLDEFLNL 99
                4466666665555555555556779********************986 PP

  == domain 2  score: 10.2 bits;  conditional E-value: 0.00036
   EF-hand_7   2 eklkeaFkelDtdgdgyldkeellrllrk 30 
                 ++l+ +F + D+dg+g ld +e+ rl+  
  KOO24109.1 108 SRLRAMFLARDVDGSGDLDLDEFSRLVDD 136
                 57888888899999999999999987653 PP

>> EF-hand_6  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.3   0.1   2.7e-05      0.06       3      25 ..      77      99 ..      75     104 .. 0.88
   2 !   11.8   0.4   8.3e-05      0.19       1      25 [.     109     133 ..     109     138 .. 0.86

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 2.7e-05
   EF-hand_6  3 reaFklfDkdgdGkidaeElrka 25
                +++F ++D+ g G+id +E+ ++
  KOO24109.1 77 EKLFCALDVGGEGTIDLDEFLNL 99
                689*****************875 PP

  == domain 2  score: 11.8 bits;  conditional E-value: 8.3e-05
   EF-hand_6   1 elreaFklfDkdgdGkidaeElrka 25 
                 +lr+ F + D+dg+G +d +E+ ++
  KOO24109.1 109 RLRAMFLARDVDGSGDLDLDEFSRL 133
                 589999999*************776 PP

>> EF-hand_5  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.7   0.1    0.0048        11       3      24 ..      78      99 ..      76     100 .. 0.80
   2 !   14.9   0.3   6.3e-06     0.014       1      25 []     110     134 ..     110     134 .. 0.90

  Alignments for each domain:
  == domain 1  score: 5.7 bits;  conditional E-value: 0.0048
                HHHHHH-SS-SSCE-HHHHHHH CS
   EF-hand_5  3 dtFqaiDlNgDGkIskeELktl 24
                ++F a+D+ g G+I+ +E+ +l
  KOO24109.1 78 KLFCALDVGGEGTIDLDEFLNL 99
                56667888888********876 PP

  == domain 2  score: 14.9 bits;  conditional E-value: 6.3e-06
                 HHHHHHHH-SS-SSCE-HHHHHHHH CS
   EF-hand_5   1 lkdtFqaiDlNgDGkIskeELktlv 25 
                 l+++F a D++g+G ++ +E+ +lv
  KOO24109.1 110 LRAMFLARDVDGSGDLDLDEFSRLV 134
                 67888889**************986 PP

>> EF-hand_8  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.4   0.1   0.00042      0.94      31      53 ..      79     101 ..      72     103 .. 0.85
   2 !    9.2   0.1   0.00046         1      28      52 ..     110     134 ..     104     136 .. 0.88

  Alignments for each domain:
  == domain 1  score: 9.4 bits;  conditional E-value: 0.00042
   EF-hand_8  31 lfrefDtdgdGkisfeEFcvlle 53 
                 lf ++D  g G+i+++EF++l +
  KOO24109.1  79 LFCALDVGGEGTIDLDEFLNLSK 101
                 78888999***********9976 PP

  == domain 2  score: 9.2 bits;  conditional E-value: 0.00046
   EF-hand_8  28 vdilfrefDtdgdGkisfeEFcvll 52 
                 ++++f + D dg+G ++++EF  l+
  KOO24109.1 110 LRAMFLARDVDGSGDLDLDEFSRLV 134
                 68899999*************9887 PP

>> EF-hand_9  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   0.00023      0.51      27      60 ..      66      98 ..      61     102 .. 0.85
   2 ?    1.2   0.0       0.2   4.6e+02      31      45 ..     121     135 ..     104     143 .. 0.63

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00023
   EF-hand_9 27 vtaqdpeeseLeelakelDPdgedasvdldtflr 60
                 ++  ++  ++e+l + lD +ge +++dld fl 
  KOO24109.1 66 AAKARTHKINVEKLFCALDVGGE-GTIDLDEFLN 98
                4555677779*************.********86 PP

  == domain 2  score: 1.2 bits;  conditional E-value: 0.2
   EF-hand_9  31 dpeeseLeelakelD 45 
                  + +++L+e+++++D
  KOO24109.1 121 GSGDLDLDEFSRLVD 135
                 344555555555555 PP

>> EF-hand_4  Cytoskeletal-regulatory complex EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.6   0.0     0.013        30      39      70 ..      70     101 ..      55     105 .. 0.79
   2 ?    7.7   0.2    0.0015       3.4      41      66 ..     106     131 ..      97     138 .. 0.82

  Alignments for each domain:
  == domain 1  score: 4.6 bits;  conditional E-value: 0.013
   EF-hand_4  39 kleedklekiwdladidedgkldfeefciamr 70 
                 + ++ ++ek++   d+  +g++d++ef    +
  KOO24109.1  70 RTHKINVEKLFCALDVGGEGTIDLDEFLNLSK 101
                 55666789999999*************86555 PP

  == domain 2  score: 7.7 bits;  conditional E-value: 0.0015
   EF-hand_4  41 eedklekiwdladidedgkldfeefc 66 
                 + ++l  ++   d+d  g+ld++ef 
  KOO24109.1 106 PRSRLRAMFLARDVDGSGDLDLDEFS 131
                 457788888889*************6 PP

>> Myb_DNA-bind_7  Myb DNA-binding like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.0       1.5   3.3e+03      36      47 ..       3      14 ..       2      31 .. 0.76
   2 ?   10.0   0.1   0.00027      0.61      43      78 ..      34      69 ..      29      78 .. 0.80

  Alignments for each domain:
  == domain 1  score: -1.9 bits;  conditional E-value: 1.5
  Myb_DNA-bind_7 36 lfpkrtrrqlKl 47
                    l p+r+r+ +Kl
      KOO24109.1  3 LHPQRQREVIKL 14
                    568888888885 PP

  == domain 2  score: 10.0 bits;  conditional E-value: 0.00027
  Myb_DNA-bind_7 43 rqlKlKFkkEerknpeliekalkkrkeldleefkee 78
                    + lKlKF +E+r ++e + + +  +++ ++e   + 
      KOO24109.1 34 QLLKLKFPTEDRAHREAMLQLCAAHEQAEAEAAAKA 69
                    669********************9999888865554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (216 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       497  (0.0277205); expected 358.6 (0.02)
Passed bias filter:                      357  (0.0199119); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.41u 0.26s 00:00:00.67 Elapsed: 00:00:00.42
# Mc/sec: 1558.05
//
Query:       KOO24110.1  [L=997]
Description: beta-d-galactosidase, partial [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.8e-93  313.0   0.0    2.3e-93  312.6   0.0    1.1  1  Glyco_hydro_2_C  Glycosyl hydrolases family 2, TIM barrel dom
    4.7e-05   24.0   0.0    0.00011   22.9   0.0    1.5  1  Glyco_hydro_2    Glycosyl hydrolases family 2
  ------ inclusion threshold ------
      0.014   15.9   0.0      0.043   14.3   0.0    1.8  1  DUF4981          Domain of unknown function(DUF4981)


Domain annotation for each model (and alignments):
>> Glyco_hydro_2_C  Glycosyl hydrolases family 2, TIM barrel domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  312.6   0.0   3.9e-97   2.3e-93       3     299 ..      99     387 ..      97     390 .. 0.92

  Alignments for each domain:
  == domain 1  score: 312.6 bits;  conditional E-value: 3.9e-97
                      EETTEEEETTEEE-EEEEEE-S-BTTTBTS--HHHHHHHHHHHHHCT--EEEETTS--SHHHHHHHHHHT-EEEEE-S-B-TTSCCCCSHCT-C CS
  Glyco_hydro_2_C   3 vkdkllliNgkrllfkGvnrHedadrrGraideellvkDlkllkqlniNavRtsHYPnqeevyelcDeyGlyvidEanlethglaqklgeieps 96 
                      v++k+lliNg +++fkGvnrHe+++++G+ ++   +  D  ++k+ n+Na R+sHYPn++++ye+cDe Glyv+dEan+ethgl+     +  +
       KOO24110.1  99 VQGKKLLINGVPVIFKGVNRHEHDEHTGKYVSDASMWTDALMMKKYNFNATRCSHYPNATRWYEICDEVGLYVMDEANIETHGLVSLPAPS--N 190
                      7899********************************************************************************9965533..4 PP

                      CCCTTTSGGGHHHHHHHHHHHHHHHTT-TTEEEEEEEESSCHHHHHHHHHHHHHHH-TTSEEEEETCSSGGGTSSEEEECCTTTSSSTTCHHHH CS
  Glyco_hydro_2_C  97 ynvladnpewlkavldrieelverdkNHpsviiWSlgNEsgagedikalaelikklDptRlvhyegvaaareldviildiysrmyekvglleel 190
                         l   pew +a l r++++ve +kNH+ + +WSlgNEsg g  +  + ++i + DptR+ hyeg +    +++  +++ s my++ ++ ++l
       KOO24110.1 191 KLHLNASPEWRRALLARVTRMVESQKNHACIFMWSLGNESGVGPTHLLMRQWINARDPTRPSHYEGLGN---CHNGASEVISPMYARPEHCAHL 281
                      4456778***********************************************************963...3344447789*****8888877 PP

                      HHHHHHCHHHHSS-EEEEEESE-BST--TTHHHHHHCCCH-CCCCCCCCCHCCHHHEEECETTEEEEEECETCTC..SBSSBTCCCCSBESB-T CS
  Glyco_hydro_2_C 191 ekelenekkklqkPlilcEYghamgnslGglqeytelfkkyeeyQggfiweyidqaiqkrdeavggellayggDf..kdeqsdlefignGlvta 282
                       + + n     ++Pl+lcEY hamgns Ggl++y+ lf+++  +Qggfiw+++dq++ +r ++ g    ayggDf  + +q+d++f++nGl + 
       KOO24110.1 282 VDAVGN----DDRPLLLCEYSHAMGNSNGGLADYWALFREHAHVQGGFIWDWCDQGLLQRLSD-GTMRWAYGGDFgpHSYQHDRQFCINGLTFP 370
                      777766....79**************************************************9.99999******555789************* PP

                      TS-B-HHHHHHHHHCHC CS
  Glyco_hydro_2_C 283 drtpkpalqelkkvyek 299
                      drtp+pal e+++++++
       KOO24110.1 371 DRTPHPALEEVRHLQQP 387
                      *************9987 PP

>> Glyco_hydro_2  Glycosyl hydrolases family 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.9   0.0   1.8e-08   0.00011      68      94 ..      18      52 ..       4      60 .. 0.73

  Alignments for each domain:
  == domain 1  score: 22.9 bits;  conditional E-value: 1.8e-08
                   E.......EEEEEES--BBECCCB--EEEEEEE.E CS
  Glyco_hydro_2 68 k.......lelevknpklWspetPnLYtlkvel.d 94
                   +        e+ +++p+lWs+e+P+LYtl + l d
     KOO24110.1 18 RadvlpleIETALESPQLWSAESPYLYTLSLALlD 52
                   23444445578899***************999843 PP

>> DUF4981  Domain of unknown function(DUF4981)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   0.0   7.2e-06     0.043       1      52 [.     399     456 ..     399     490 .. 0.76

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 7.2e-06
                 EEEEE--SS--GGGE.EEEEEEEETTEEEEEEEEEE-..--TT-EEEEE...--S.-- CS
     DUF4981   1 vtikNrydFtdlsdl.dlswellkdGkvvasgelelp..vaPgesatvt...lpetke 52 
                 +t++   dF   ++l +l+w+l +dG ++a+g ++ +  ++Pg++ ++    lp+ ++
  KOO24110.1 399 LTLRSMLDFGRFDELyALRWQLRRDGLPMADGAFASTpaLPPGATWSIAatsLPWHAA 456
                 578889999999999899**************8888889*****99987566666544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (997 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       344  (0.0191868); expected 358.6 (0.02)
Passed bias filter:                      288  (0.0160634); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.65u 0.26s 00:00:00.91 Elapsed: 00:00:00.42
# Mc/sec: 7211.43
//
Query:       KOO24111.1  [L=652]
Description: dead-box ATP-dependent RNA helicase 24-like protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.2e-42  144.3   0.0    7.5e-42  143.1   0.0    1.6  2  DEAD           DEAD/DEAH box helicase
      2e-26   92.5   0.0    1.1e-25   90.2   0.0    2.0  2  Helicase_C     Helicase conserved C-terminal domain
     0.0017   18.4   0.0     0.0032   17.5   0.0    1.4  1  ResIII         Type III restriction enzyme, res subunit
  ------ inclusion threshold ------
      0.012   14.8   0.0      0.018   14.2   0.0    1.2  1  ERCC3_RAD25_C  ERCC3/RAD25/XPB C-terminal helicase
       0.12   11.7   0.0       0.55    9.5   0.0    1.9  2  CMS1           U3-containing 90S pre-ribosomal complex subuni


Domain annotation for each model (and alignments):
>> DEAD  DEAD/DEAH box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  143.1   0.0   2.1e-45   7.5e-42       1     175 [.     275     447 ..     275     448 .. 0.95
   2 ?   -2.8   0.0       1.3   4.7e+03      50     104 ..     501     556 ..     490     562 .. 0.58

  Alignments for each domain:
  == domain 1  score: 143.1 bits;  conditional E-value: 2.1e-45
                 -HHHHHHHHHHHTTCEEEEEESTTSSHHHHHHHHHHHHHHHS...TTSTS-EEEEEESSHHHHHHHHHHHHHHTTT.STSEEEEEETTSSHHHHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxx RF
        DEAD   1 tdiQaeaiplilgggdvlvaaeTGsGKTlaflipvlqivyet...kgktgpkalivePtreLaeqtlnnlkkfkky.idlrvlliiggvaardqlskld 95 
                 t++Q +a+p +++g+d+++ a+TGsGKT a+l+p+  +v+ +   ++ +gp  l+++Pt+eLaeq++ +++k++   ++l++ ++iggv + +ql++l+
  KOO24111.1 275 TSVQMQALPVAMSGRDLIGVAATGSGKTVAYLLPLGCHVMAQrrlEHGEGPIGLVLAPTHELAEQIALECRKLLGRsLGLNCASLIGGVGKYEQLKALR 373
                 789************************************999999999**************************98799******************** PP

                 TTCSEEEEEHHHHHHHH.HCTSSHCTTEEEEEEETHHHHHHTTTHHHHHHHHHHSHHHCTTSTTTSEEEEEESSBSHHHHH CS
                 xxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD  96 ngvdivvgtpgrlddll.stgklnlsqvrflVlDEadrlldqgfsdfinrilnqlpqitcdgklqrqvivlSATlpkdvkk 175
                 +g+++ vgtpgrl++ll  ++ l  ++v+f+VlDEadr+ + gf++++++il+q+       + +rq +++SAT+p  +++
  KOO24111.1 374 AGCEVAVGTPGRLVELLaMKNGLCARRVTFVVLDEADRMFSLGFEPQVRAILQQV-------RPDRQALLFSATFPPALER 447
                 ***************99556779********************************.......35678********977765 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 1.3
                 EEEEESSHHHHHHHHHHHHHHTTTSTSEEEEEETTSSHHHHHHHH...HTT.CSEEEEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxx.xxxxxxx RF
        DEAD  50 alivePtreLaeqtlnnlkkfkkyidlrvlliiggvaardqlskl...dng.vdivvgt 104
                 +l+ + tr  a   + +l+  +      v++i g++++ + +++l   ++g + ++v+t
  KOO24111.1 501 VLVFVSTRLQADGLAAQLQAHMG---RAVVAIHGEKSQAERQETLydfKRGkMPLLVAT 556
                 55555555555555555555555...345566665555555554433333346666666 PP

>> Helicase_C  Helicase conserved C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.0      0.67   2.4e+03      24      60 ..     332     373 ..     316     405 .. 0.76
   2 !   90.2   0.0   2.9e-29   1.1e-25      10     111 .]     492     594 ..     484     594 .. 0.91

  Alignments for each domain:
  == domain 1  score: -1.1 bits;  conditional E-value: 0.67
                 SSHHHHHH....HHHHHHHT.TSTEEEESTTSTHHHHHHHHH CS
  Helicase_C  24 ntidrlek....vklllekk.gikvavlhgelpqnereeile 60 
                 +t + +e+    ++ ll ++ g+++a l g   + e++++l+
  KOO24111.1 332 PTHELAEQialeCRKLLGRSlGLNCASLIGGVGKYEQLKALR 373
                 555533333344344444445999999999999999999887 PP

  == domain 2  score: 90.2 bits;  conditional E-value: 2.9e-29
                 HHHTTTTSEEEEEESSHHHHHH.HHHHHHHTTSTEEEESTTSTHHHHHHHHHHHHTTSSSEEEESGGGTSSSTSTTESEEEESSSSSSHHHHHHHHTTS CS
  Helicase_C  10 lkleeeggkilifvntidrlek.vklllekkgikvavlhgelpqnereeileqfnkgesdvLiatdvaerGidipkvnlVinfdlprnvtsyiqriGRt 107
                 l++  ++g++l+fv t+ +++  +  l+ + g  v+++hge +q er+e+l +f++g+  +L+atdva+rG+dip +++Vinfd+ + +++  +riGRt
  KOO24111.1 492 LEHFLQQGTVLVFVSTRLQADGlAAQLQAHMGRAVVAIHGEKSQAERQETLYDFKRGKMPLLVATDVASRGLDIPTIKTVINFDVAKRLDDHTHRIGRT 590
                 4556799***********9986666665555******************************************************************** PP

                 SSTT CS
  Helicase_C 108 gRag 111
                 gRag
  KOO24111.1 591 GRAG 594
                 **97 PP

>> ResIII  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5   0.0   8.9e-07    0.0032      30     169 ..     294     441 ..     274     443 .. 0.78

  Alignments for each domain:
  == domain 1  score: 17.5 bits;  conditional E-value: 8.9e-07
                 EESTTSTHHHHH.HHHHHHH-S..........-EEEEESSHHHHHHHHHHGGGGTGG.........GEEEESSS-B--.......-SEEEEEHHHHHHT CS
      ResIII  30 kmaTGtGKTlva.aklierllkkgkee.....kflflvprkslleqtleefkkflseayke.....igkkvsgdkkkakekdstnkkilvttiqsldad 117
                 ++aTG+GKT+ + + l  +++ +++ e       l+l+p+ +l eq   e +k+l           ig++ + ++ ka    +  +++ v t  +l + 
  KOO24111.1 294 VAATGSGKTVAYlLPLGCHVMAQRRLEhgegpIGLVLAPTHELAEQIALECRKLLGRSLGLncaslIGGVGKYEQLKA---LRAGCEVAVGTPGRLVEL 389
                 78*******9985545444444444445555789**************999988887754465555444444444444...6799************** PP

                 H........HHHTTT-SEEEEETGGGTTS....TTTHHHHHT---.SEEEEEESS- CS
      ResIII 118 seeeeeeseellrdrfdviiiDEaHrlgak...kswreilekfke.avllglTATp 169
                 +     +++ l   r  +++ DEa r+ +     ++r+il+++++    l ++AT+
  KOO24111.1 390 L----AMKNGLCARRVTFVVLDEADRMFSLgfePQVRAILQQVRPdRQALLFSATF 441
                 9....999999999999*********999755459999999997647789999*98 PP

>> ERCC3_RAD25_C  ERCC3/RAD25/XPB C-terminal helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   0.0   5.1e-06     0.018      83     152 ..     527     594 ..     493     606 .. 0.77

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 5.1e-06
  ERCC3_RAD25_C  83 pyiyGetseaerlkilqkfkknpkvntiflskvgDtsiDlPeanvliqisshfgsrr.qeaqrlGriLrak 152
                      i+Ge s+aer++ l +fk+  k+  ++   v+   +D+P+ + +i    +++ r      r+Gr  ra 
     KOO24111.1 527 VAIHGEKSQAERQETLYDFKRG-KMPLLVATDVASRGLDIPTIKTVINF--DVAKRLdDHTHRIGRTGRAG 594
                    4599***************987.7889999************9999865..55666514578999988875 PP

>> CMS1  U3-containing 90S pre-ribosomal complex subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   0.0   0.00015      0.55     178     209 ..     376     408 ..     365     412 .. 0.82
   2 ?   -1.0   0.0      0.25   8.9e+02     119     151 ..     592     624 ..     569     629 .. 0.80

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 0.00015
        CMS1 178 igiavGtpgRildLl.eeeslsvdeLkrivlDa 209
                   +avGtpgR+++Ll  ++ l    ++ +vlD 
  KOO24111.1 376 CEVAVGTPGRLVELLaMKNGLCARRVTFVVLDE 408
                 459************878899999999999996 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 0.25
        CMS1 119 ksaksngsPelLvltlaalRaaDlaralkklqt 151
                 ++ +++g+  +L+ +     a+D++r+l+  ++
  KOO24111.1 592 RAGATDGTAYTLLTAGEMDAAVDMVRSLRTARQ 624
                 5678899999999999999999******98875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (652 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       519  (0.0289475); expected 358.6 (0.02)
Passed bias filter:                      377  (0.0210274); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.53u 0.27s 00:00:00.80 Elapsed: 00:00:00.39
# Mc/sec: 4969.67
//
Query:       KOO24112.1  [L=340]
Description: hypothetical protein Ctob_001626 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    7.9e-07   29.6   8.0      0.041   14.6   1.2    4.3  4  Sel1           Sel1 repeat
  ------ inclusion threshold ------
        2.8    6.0  11.9        3.7    5.6  11.9    1.1  1  HSP70          Hsp70 protein
        3.2    6.3  11.3        4.6    5.8  11.3    1.2  1  Peptidase_S46  Peptidase S46


Domain annotation for each model (and alignments):
>> Sel1  Sel1 repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.1   0.1      0.06   3.6e+02      23      33 ..     138     148 ..     124     153 .. 0.84
   2 !   13.8   0.0   1.2e-05      0.07       6      37 ..     159     188 ..     156     189 .. 0.91
   3 !   14.6   1.2   6.8e-06     0.041       3      31 ..     192     219 ..     191     224 .. 0.88
   4 ?   -1.1   0.0       0.6   3.6e+03      16      30 ..     224     241 ..     221     242 .. 0.77

  Alignments for each domain:
  == domain 1  score: 2.1 bits;  conditional E-value: 0.06
        Sel1  23 pekAiewyekA 33 
                 +ekA++w e++
  KOO24112.1 138 KEKAFKWIEQS 148
                 69*****9986 PP

  == domain 2  score: 13.8 bits;  conditional E-value: 1.2e-05
        Sel1   6 rLGmfylylnGlgvpkDpekAiewyekAAeqG 37 
                 +LG  +++lnG+gv++D+  ++ ++  AA +G
  KOO24112.1 159 ALG--LCFLNGQGVKQDRVHGLVLMAEAAILG 188
                 79*..9*****************999999887 PP

  == domain 3  score: 14.6 bits;  conditional E-value: 6.8e-06
        Sel1   3 AmyrLGmfylylnGl.gvpkDpekAiewye 31 
                 A  +LG   +y  G  g p+D ++A++wy 
  KOO24112.1 192 ARLNLG--KYYALGFdGYPRDMKQARRWYS 219
                 6679**..888****66************6 PP

  == domain 4  score: -1.1 bits;  conditional E-value: 0.6
        Sel1  16 Gl..gvpkD.pekAiewy 30 
                 G+  ++++D  e+A+ w+
  KOO24112.1 224 GTidDIEADgLEEARAWL 241
                 6663588988999***97 PP

>> HSP70  Hsp70 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.6  11.9   0.00062       3.7     472     577 ..     228     334 ..     211     340 .] 0.81

  Alignments for each domain:
  == domain 1  score: 5.6 bits;  conditional E-value: 0.00062
                 EEETTSCEEEEEEETTTCCEEEEEEECCSSSBHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH.GGGSTHHHHHHHHHHHHHHHC CS
       HSP70 472 didanGiltvsakdketgkeeeitieaseglseeeiekmvkdaeesaeedkkkkeaieakneaeelvyslekkleee.aekvseaekekvesaieeLke 569
                 di+a+G+ + +a   e++ +e++  e+  +++++e+e m  +ae+ ae+ +++k+++e+ +++++ +++l+++ ++  + ++ +a +e++ s ++eL +
  KOO24112.1 228 DIEADGLEEARAWLAEEEAREKELSESIARQKAAEEEAMRAKAEAEAERAAAAKAEAERMAKLKTQIERLAAEKAQLqKLAALKAGAERLASIKTELAR 326
                 799********9999999999999999999**********************************99999988777663444445555777777777776 PP

                 HTTSSCHH CS
       HSP70 570 eleeeeke 577
                  ++e+ +e
  KOO24112.1 327 VAAEKAEE 334
                 65444433 PP

>> Peptidase_S46  Peptidase S46
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.8  11.3   0.00077       4.6     322     405 ..     253     337 ..     222     340 .] 0.80

  Alignments for each domain:
  == domain 1  score: 5.8 bits;  conditional E-value: 0.00077
                    TTHHHHHHHHHHHHHHHHHHCT-H.HHHTTHHHHHHHHHHHHHHHHHHHHHHHHHTT...TTSHHHHHHHHHHHHHHHHH....HH- CS
  Peptidase_S46 322 kkvlekkqaeeaalrawlkkdpekkekygkalselealvkekrklaersalleeaes...sgsellslarklvrlaeerekpdaere 405
                    + + ++k+aee+a+ra++++++e+++++++  +++++l ++ ++la+++a l+++++   ++ +l+s+ ++l r+a+e+   ++er+
     KOO24112.1 253 ESIARQKAAEEEAMRAKAEAEAERAAAAKAEAERMAKLKTQIERLAAEKAQLQKLAAlkaGAERLASIKTELARVAAEKA--EEERR 337
                    56788999999********9999999999999999999999988888888877765522266789999999999998887..44444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (340 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1914  (0.106754); expected 358.6 (0.02)
Passed bias filter:                      627  (0.0349713); expected 358.6 (0.02)
Passed Vit filter:                        86  (0.0047967); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.62u 0.27s 00:00:00.89 Elapsed: 00:00:00.45
# Mc/sec: 2279.26
//
Query:       KOO24113.1  [L=406]
Description: hypothetical protein Ctob_004918 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.9e-28   97.4   6.0    3.2e-13   49.7   0.1    2.4  2  Myb_DNA-binding  Myb-like DNA-binding domain
    2.3e-22   79.0   4.5    8.8e-17   61.1   0.7    2.4  2  Myb_DNA-bind_6   Myb-like DNA-binding domain
     0.0073   16.6   3.0       0.08   13.3   1.0    2.3  2  MADF_DNA_bdg     Alcohol dehydrogenase transcription factor M
  ------ inclusion threshold ------
      0.035   14.1   0.1        4.1    7.5   0.0    2.7  3  SLIDE            SLIDE
      0.037   13.9   0.0       0.07   13.0   0.0    1.5  1  Myb_DNA-bind_7   Myb DNA-binding like
       0.15   12.7   1.2       0.25   12.0   0.1    2.0  2  SlyX             SlyX
       0.19   11.9   0.7         16    5.8   0.3    2.5  2  Myb_DNA-bind_2   Rap1 Myb domain
          1    9.8   3.8        0.8   10.1   0.7    2.2  2  Myb_DNA-bind_4   Myb/SANT-like DNA-binding domain


Domain annotation for each model (and alignments):
>> Myb_DNA-binding  Myb-like DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.7   2.7   2.8e-16   6.2e-13       4      46 .]     285     329 ..     282     329 .. 0.94
   2 !   49.7   0.1   1.4e-16   3.2e-13       1      43 [.     335     378 ..     335     380 .. 0.94

  Alignments for each domain:
  == domain 1  score: 48.7 bits;  conditional E-value: 2.8e-16
                      SBHHHHHHHHHHHHHHT.TCHHHHHHHHT.SS-HHHHHHHHHHHT CS
  Myb_DNA-binding   4 WteeEdelLleavkkhG.nrWkkIaerlg.gRtekqcrsrwrnyl 46 
                      Wt +Ede L ++v++hG   W+++a+r++  R  kqcr+rwrn+l
       KOO24113.1 285 WTVQEDECLRRLVAEHGeQAWALVASRMPhERNNKQCRERWRNHL 329
                      *****************666*********99************97 PP

  == domain 2  score: 49.7 bits;  conditional E-value: 1.4e-16
                      CSSSBHHHHHHHHHHHHHHTTCHHHH.HHHHTSS-HHHHHHHHH CS
  Myb_DNA-binding   1 rgkWteeEdelLleavkkhGnrWkkI.aerlggRtekqcrsrwr 43 
                      +g+Wt  Ed+++le v++hG +W+kI + +l+ R e+++++rw+
       KOO24113.1 335 KGPWTDAEDLRILEMVQQHGTKWAKIsSLYLPDRPENDIKNRWH 378
                      79************************555**************6 PP

>> Myb_DNA-bind_6  Myb-like DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.1   0.7   3.9e-20   8.8e-17       1      57 [.     285     343 ..     285     345 .. 0.94
   2 !   27.3   0.2   1.4e-09   3.1e-06       1      40 [.     338     378 ..     338     389 .. 0.93

  Alignments for each domain:
  == domain 1  score: 61.1 bits;  conditional E-value: 3.9e-20
  Myb_DNA-bind_6   1 WteeEdeiLlklvekyg.ndWknIaeal.nrRtpkqcfdrwknkLrpkisrkkwskeed 57 
                     Wt++Ede L++lv ++g + W ++a+ + + R+ kqc++rw+n+Lrp++++++w+++ed
      KOO24113.1 285 WTVQEDECLRRLVAEHGeQAWALVASRMpHERNNKQCRERWRNHLRPQCNKGPWTDAED 343
                     ****************8469********55***************************99 PP

  == domain 2  score: 27.3 bits;  conditional E-value: 1.4e-09
  Myb_DNA-bind_6   1 WteeEdeiLlklvekygndWknIaeal.nrRtpkqcfdrwk 40 
                     Wt++Ed ++l+ v+++g +W +I++ + + R  +++++rw+
      KOO24113.1 338 WTDAEDLRILEMVQQHGTKWAKISSLYlPDRPENDIKNRWH 378
                     *************************9769***********8 PP

>> MADF_DNA_bdg  Alcohol dehydrogenase transcription factor Myb/SANT-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.3   1.0   3.6e-05      0.08      10      51 ..     283     327 ..     279     335 .. 0.75
   2 ?    2.8   0.0     0.066   1.5e+02      24      52 ..     352     380 ..     344     393 .. 0.88

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 3.6e-05
  MADF_DNA_bdg  10 vLwdrshpdyr...nkekrekaweeiaeelnekvdveeckkkwkn 51 
                   vLw  + ++       e  e+aw  +a+++  + ++++c+++w+n
    KOO24113.1 283 VLWTVQEDECLrrlVAEHGEQAWALVASRMPHERNNKQCRERWRN 327
                   56666665555222345679**********999**********97 PP

  == domain 2  score: 2.8 bits;  conditional E-value: 0.066
  MADF_DNA_bdg  24 krekaweeiaeelnekvdveeckkkwknL 52 
                   ++   w +i++ +  + +++++k++w+ L
    KOO24113.1 352 QHGTKWAKISSLYLPDRPENDIKNRWHIL 380
                   55678********999**********976 PP

>> SLIDE  SLIDE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.1       3.1     7e+03      13      35 ..      87     109 ..      81     114 .. 0.63
   2 ?    3.9   0.0     0.023        52      47      77 ..     280     310 ..     267     319 .. 0.82
   3 ?    7.5   0.0    0.0018       4.1      44      76 ..     331     361 ..     314     383 .. 0.80

  Alignments for each domain:
  == domain 1  score: -3.0 bits;  conditional E-value: 3.1
       SLIDE  13 kieklkelkellkkkveqyknpl 35 
                  i ++++  ++l++ v++++  +
  KOO24113.1  87 IIARQQKEIAALRELVASQAAAI 109
                 45666666677888877766655 PP

  == domain 2  score: 3.9 bits;  conditional E-value: 0.023
       SLIDE  47 kgkkeyteeeDrfllvllakyGygnyekikk 77 
                 ++ + +t +eD+ l  l+a++G +++  + +
  KOO24113.1 280 NTHVLWTVQEDECLRRLVAEHGEQAWALVAS 310
                 445569*******************987765 PP

  == domain 3  score: 7.5 bits;  conditional E-value: 0.0018
       SLIDE  44 psnkgkkeyteeeDrfllvllakyGygnyekik 76 
                 p+ ++   +t+ eD  +l +++++G + + ki 
  KOO24113.1 331 PQCNK-GPWTDAEDLRILEMVQQHGTK-WAKIS 361
                 44444.45*****************97.77775 PP

>> Myb_DNA-bind_7  Myb DNA-binding like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.0   3.1e-05      0.07       7      51 ..     334     379 ..     312     397 .. 0.88

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 3.1e-05
  Myb_DNA-bind_7   7 ktkkWskeetekFYkaLsqfGtDFsliakl.fpkrtrrqlKlKFkk 51 
                     ++ +W+++e  +  ++++q Gt +  i++l +p+r  +++K++++ 
      KOO24113.1 334 NKGPWTDAEDLRILEMVQQHGTKWAKISSLyLPDRPENDIKNRWHI 379
                     5779***********************998579*********9875 PP

>> SlyX  SlyX
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.1   0.00011      0.25      23      56 ..      85     119 ..      80     135 .. 0.68
   2 ?   -3.5   0.1       7.6   1.7e+04      45      64 ..     234     253 ..     233     253 .. 0.78

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 0.00011
                 HHHHHHHHHHHHHHHHHHHHHHHT-XXXXXXXX.X CS
        SlyX  23 ndvvaeqqqqidrlqrqlrllaerlkeleessg.a 56 
                  +++a+qq++i++l++ ++  a  +++l+++++  
  KOO24113.1  85 GQIIARQQKEIAALRELVASQAAAIEHLRAAAAcV 119
                 57899999999999999999999998888887642 PP

  == domain 2  score: -3.5 bits;  conditional E-value: 7.6
                 HT-XXXXXXXXXXXXXXXXX CS
        SlyX  45 erlkeleessgaseaeeepP 64 
                 +rlk+ e+ss+ s+++++ P
  KOO24113.1 234 KRLKSHEASSAPSPRADALP 253
                 68999999988888787766 PP

>> Myb_DNA-bind_2  Rap1 Myb domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.8   0.3     0.007        16       8      63 ..     288     335 ..     281     337 .. 0.77
   2 ?    4.7   0.0     0.016        35       4      22 ..     337     355 ..     334     362 .. 0.80

  Alignments for each domain:
  == domain 1  score: 5.8 bits;  conditional E-value: 0.007
  Myb_DNA-bind_2   8 eeDaailkyvkekerspasvkGnkiwkelekkhltrHsWQslkdRylkrlrkqere 63 
                     +eD+ + + v          +G + w  ++ + + +      ++R++ +lr+q ++
      KOO24113.1 288 QEDECLRRLV--------AEHGEQAWALVASRMPHERNNKQCRERWRNHLRPQCNK 335
                     4444444444........3479999*********9999999**********99776 PP

  == domain 2  score: 4.7 bits;  conditional E-value: 0.016
  Myb_DNA-bind_2   4 pyteeeDaailkyvkeker 22 
                     p+t++eD  il+ v+++  
      KOO24113.1 337 PWTDAEDLRILEMVQQHGT 355
                     99************87654 PP

>> Myb_DNA-bind_4  Myb/SANT-like DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.7   0.00036       0.8       9      62 ..     281     327 ..     275     330 .. 0.70
   2 ?   -0.4   0.1      0.68   1.5e+03       4      19 ..     338     353 ..     335     392 .. 0.62

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.00036
                     HHHHHHHHHH..HHHHHHH..SS--HHHHHHHHHHHHHHC----HHHHHHHHHH CS
  Myb_DNA-bind_4   9 tklLieawgerilelrfqergkkrnkklWeevaeamaergykrspeqCkeKien 62 
                     t++L ++ +++ l+         ++++ W  va++m    ++r+ +qC+e+++n
      KOO24113.1 281 THVLWTVQEDECLRRL----VAEHGEQAWALVASRMP---HERNNKQCRERWRN 327
                     5555555566444443....34566668999999886...56889*******98 PP

  == domain 2  score: -0.4 bits;  conditional E-value: 0.68
                     S-HHHHHHHHHHHHH. CS
  Myb_DNA-bind_4   4 WteeetklLieawger 19 
                     Wt++e +  +e+++++
      KOO24113.1 338 WTDAEDLRILEMVQQH 353
                     7777766666666653 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (406 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       704  (0.039266); expected 358.6 (0.02)
Passed bias filter:                      431  (0.0240393); expected 358.6 (0.02)
Passed Vit filter:                        47  (0.00262145); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.52u 0.25s 00:00:00.77 Elapsed: 00:00:00.42
# Mc/sec: 2877.43
//
Query:       KOO24114.1  [L=365]
Description: hypothetical protein Ctob_004919 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.3e-10   40.6   0.0    1.5e-10   40.4   0.0    1.1  1  SNF2_N          SNF2 family N-terminal domain
  ------ inclusion threshold ------
      0.014   15.7  15.7      0.014   15.7  15.7    4.3  5  Alanine_zipper  Alanine-zipper, major outer membrane lipoprot


Domain annotation for each model (and alignments):
>> SNF2_N  SNF2 family N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.4   0.0   1.6e-14   1.5e-10       8      81 ..     126     254 ..     124     341 .. 0.77

  Alignments for each domain:
  == domain 1  score: 40.4 bits;  conditional E-value: 1.6e-14
                 HH............................................................................HHHHHTT--EEE---TTS--H CS
                 xxxxxxxxxxxxxxxxxxxxx.....................................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
      SNF2_N   8 wmlkReqnlqdleaalrkllk.....................................tldgekiyvnpatgevveesaeakqsvrGGiLaDemGLGKT 69 
                 w+ +R  +++dl aa+  +                                          g + y+ +a+g+ +  +++     rGGiLaDemGLGKT
  KOO24114.1 126 WL-ERAAFTDDLAAAASAGVDasetaaaatarryalsrlvrqlrlppeiapatdphagLDCGTPFYIHVASGAASLTPPSDAGTPRGGILADEMGLGKT 223
                 66.77777777777777776667777777777777778888888888888888877744457899********************************** PP

                 HHHHHHHH......................H CS
                 xxxxxxxxxxx...................x RF
      SNF2_N  70 vqvlalilaqr...................a 81 
                 +qv+  ila                     a
  KOO24114.1 224 LQVIGTILADLealegavanveangdgkasA 254
                 *******976655555555555555554440 PP

>> Alanine_zipper  Alanine-zipper, major outer membrane lipoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.1      0.55   4.9e+03       9      29 ..      11      31 ..       9      34 .. 0.59
   2 ?   -3.3   7.3       1.3   1.2e+04      27      48 ..      66      87 ..      64      89 .. 0.65
   3 ?   -2.1   7.1      0.57   5.1e+03      16      36 ..     135     155 ..     129     163 .. 0.60
   4 ?    0.8  10.8     0.073   6.5e+02       3      55 ..     234     287 ..     232     287 .. 0.62
   5 ?   15.7  15.7   1.6e-06     0.014      16      57 ..     269     310 ..     253     320 .. 0.63

  Alignments for each domain:
  == domain 1  score: -2.0 bits;  conditional E-value: 0.55
  Alanine_zipper  9 kadqaeqdaaaaksaadeAks 29
                    ++++++ +a  a+   ++A +
      KOO24114.1 11 TINAIMGAATPARHIVEDALR 31
                    566666666666666666654 PP

  == domain 2  score: -3.3 bits;  conditional E-value: 1.3
  Alanine_zipper 27 AkskAdeAaarAenAeaaAeeA 48
                    A+ +Ad Aaa+A +  a A+ A
      KOO24114.1 66 AAPAADHAAATAGASGAHAANA 87
                    5567777777777665555554 PP

  == domain 3  score: -2.1 bits;  conditional E-value: 0.57
  Alanine_zipper  16 daaaaksaadeAkskAdeAaa 36 
                     d aaa sa  +A+++A++A a
      KOO24114.1 135 DLAAAASAGVDASETAAAATA 155
                     445555555555555555554 PP

  == domain 4  score: 0.8 bits;  conditional E-value: 0.073
  Alanine_zipper   3 veelqakadqaeqdaaaaksaadeAkskAdeAaarAenA..eaaAeeAqkaAeea 55 
                     +e+l+  + ++e++ +   sa ++A  kA  A ++++ A  e+aA+eA  +A+ea
      KOO24114.1 234 LEALEGAVANVEANGDGKASALQTADGKAS-ALQTVDGAaaEEAADEAPTTADEA 287
                     666666676777776666666666766664.444554333388888888888875 PP

  == domain 5  score: 15.7 bits;  conditional E-value: 1.6e-06
  Alanine_zipper  16 daaaaksaadeAkskAdeAaarAenAeaaAeeAqkaAeeane 57 
                     d aaa++aadeA ++AdeA ++A++A  +A+eA  +A+ea +
      KOO24114.1 269 DGAAAEEAADEAPTTADEAPTTADEAPTTADEAPTTADEAPT 310
                     556777777777777777777777777777777777777643 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (365 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       642  (0.0358079); expected 358.6 (0.02)
Passed bias filter:                      288  (0.0160634); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.47u 0.26s 00:00:00.73 Elapsed: 00:00:00.42
# Mc/sec: 2636.88
//
Query:       KOO24115.1  [L=258]
Description: hypothetical protein Ctob_004914 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (258 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       475  (0.0264934); expected 358.6 (0.02)
Passed bias filter:                      405  (0.0225891); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.43u 0.25s 00:00:00.68 Elapsed: 00:00:00.41
# Mc/sec: 1908.33
//
Query:       KOO24116.1  [L=221]
Description: hypothetical protein Ctob_004915 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    0.00037   20.8   0.0     0.0005   20.4   0.0    1.2  1  Polyketide_cyc2  Polyketide cyclase / dehydrase and lipid tra


Domain annotation for each model (and alignments):
>> Polyketide_cyc2  Polyketide cyclase / dehydrase and lipid transport
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.4   0.0   2.8e-08    0.0005       8     132 ..      53     183 ..      46     194 .. 0.72

  Alignments for each domain:
  == domain 1  score: 20.4 bits;  conditional E-value: 2.8e-08
                      EEESS-HHHHHHHHTTTTGGGGT-TTEEEEE...CSESTSSS..TTTEEEEECCCS.SEEEEEEEE.EETTTTEEEEEEE...SSS-TSEEEEE CS
  Polyketide_cyc2   8 vviaappekVwalvsdfenwprWhpevarve...leggggpa..rgvegtvrvggr.gtvreelve.vdpegrllsyriv..kpvpvanyvatw 92 
                      +++ app  + + + d +++p+   +v++++   + + + ++  r ++ ++    +  + +  l+  ++p+ r++++r+       + + v++w
       KOO24116.1  53 KDVRAPPSVITRKILDIDAYPAMVKGVDSTAtysMSE-DASTglRTIKTRYDISALhVKFTYYLEHiYSPADRCMTFRLDydRRSDLDDTVGYW 145
                      6899************************885222333.34434555555555555355566666664469*********66777888888**** PP

                      EEEECCET.EEEEEEEEEEEE--TT--HHHHHHHHHHHHHH CS
  Polyketide_cyc2  93 tvtpdggg.trvtwtgefdagplggpfekpaaakavkgdle 132
                       v+p+g+  +rv ++    ++ l+g++ +p+     k++l+
       KOO24116.1 146 YVQPRGPEeCRVYYSC---VTQLRGWVPGPVYSLITKAALK 183
                      ******5559999998...4457777766665555555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (221 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       226  (0.0126053); expected 358.6 (0.02)
Passed bias filter:                      216  (0.0120475); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.28s 00:00:00.68 Elapsed: 00:00:00.43
# Mc/sec: 1538.28
//
Query:       KOO24117.1  [L=248]
Description: hypothetical protein Ctob_004916 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
     0.0015   18.9   0.0     0.0023   18.3   0.0    1.3  1  Recombinase  Recombinase
  ------ inclusion threshold ------
       0.16   12.6   0.1       0.52   11.0   0.0    1.8  2  HTH_32       Homeodomain-like domain


Domain annotation for each model (and alignments):
>> Recombinase  Recombinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.3   0.0   2.6e-07    0.0023       5      56 ..      54     108 ..      52     143 .. 0.91

  Alignments for each domain:
  == domain 1  score: 18.3 bits;  conditional E-value: 2.6e-07
  Recombinase   5 eivrrifelylegkslksiaryLneegiktprgkekW....skstvkriLtnpvyi 56 
                  e+v+r+ el  eg sl  i ++Lneeg+k  rg+  W    +++ v ri+t + y+
   KOO24117.1  54 ETVERVHELCREGLSLSGIRNKLNEEGFKNSRGQV-WpinnDHAVVIRIITKKGYT 108
                  6899*****99******************999999.99998999999999998775 PP

>> HTH_32  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   5.8e-05      0.52      21      69 ..      42      88 ..      31      91 .. 0.76
   2 ?   -1.9   0.0      0.59   5.3e+03      15      38 ..     161     184 ..     152     187 .. 0.72

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 5.8e-05
      HTH_32 21 prrgrpr.klsdevrariiallreeprWsprqlaarlaeregvkvShstv 69
                +++g++  + ++e+++r+ +l+ +e  +s++ ++ +l  +eg k S+ +v
  KOO24117.1 42 SQAGAKGcRQPPETVERVHELC-RE-GLSLSGIRNKL-NEEGFKNSRGQV 88
                456777669*************.77.89*********.444456666655 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 0.59
      HTH_32  15 egLkdrprrg.rprklsdevrarii 38 
                 ++L d++r+  +p  l+++++  ++
  KOO24117.1 161 DALCDEARKAlHPG-LPPAEQPLVR 184
                 67778877765776.8888877766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (248 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       384  (0.0214178); expected 358.6 (0.02)
Passed bias filter:                      332  (0.0185175); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.42u 0.24s 00:00:00.65 Elapsed: 00:00:00.40
# Mc/sec: 1863.21
//
Query:       KOO24118.1  [L=395]
Description: homogentisate phytyltransferase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.8e-35  121.9  25.7    3.7e-35  121.4  25.7    1.2  1  UbiA      UbiA prenyltransferase family
  ------ inclusion threshold ------
      0.067   13.4   0.3       0.24   11.6   0.3    1.9  1  TMEM238   TMEM238 protein family
       0.07   13.0   0.4       0.19   11.6   0.4    1.7  1  DUF2631   Protein of unknown function (DUF2631)


Domain annotation for each model (and alignments):
>> UbiA  UbiA prenyltransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  121.4  25.7   6.3e-39   3.7e-35       3     240 ..     100     362 ..      98     382 .. 0.83

  Alignments for each domain:
  == domain 1  score: 121.4 bits;  conditional E-value: 6.3e-39
        UbiA   3 ipalvglalaaggspdl...llllllllgtllaaaaanalNdyfDreiDadmertpnRPlvsGrispkealifaivllilgllllalllnpltal...l 95 
                 ipal  +a+ ag  ++l   + +l +l ++ll+++++ +lN+++D+eiD++  ++p+ Pl+sG++sp ++ ++++  l+l+l+l+ ++  +l+     +
  KOO24118.1 100 IPALTLYAAPAGAALSLpllQGVLYALPAALLMNVYITGLNQLLDIEIDRI--NKPDLPLASGELSPFAGSLLVAGALVLSLGLG-WWHPWLSTNalrI 195
                 6677777777777766655588899999999********************..********************************.5555544433334 PP

        UbiA  96 gllallly.vvYt.g.lrlKrrtllgtvvggiafglppllgwaavtgsl..................sllalllalavflltwaialandlrdregDrk 173
                 +ll+ +++ ++Y+ + +rlKr++ll+  ++ ++ g ++ +g++a + s+                  +l ++++  ++ l+ + ial +d++d++gDr+
  KOO24118.1 196 TLLGSAVLgTLYSaPpFRLKRFPLLASACIITVRGALVNWGFCAHAISVaaaaagslpsaalgwsslPLRCWAPVGFFSLFGLVIALLKDVPDIKGDRQ 294
                 555444444*****99****************************5555556777888****************************************** PP

        UbiA 174 agiktlpvvlGrkaaril.lalllavlllallllllalllllylllalllaalallraarlvrrrdak 240
                  gi++++v++G++a+++l l ll++ l l  ++l++a++l ++++la+  +a+ l+ aa +v+ r+++
  KOO24118.1 295 FGIRSFSVRIGAAAVLRLgLNLLTTTLALTGVALGAAATLAPTAALAVRRLAVSLACAASVVAIRRRA 362
                 ******************85555555555567788888888888888877777777777777666654 PP

>> TMEM238  TMEM238 protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.3   3.9e-05      0.24      31      57 ..     165     191 ..     157     196 .. 0.88

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 3.9e-05
     TMEM238  31 fgDllvytGaliiflSLlwwvlWYtgn 57 
                 f   l+ +Gal++ l+L ww  W + n
  KOO24118.1 165 FAGSLLVAGALVLSLGLGWWHPWLSTN 191
                 6666889****************9998 PP

>> DUF2631  Protein of unknown function (DUF2631)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.4   3.1e-05      0.19      18      47 ..     252     281 ..     242     285 .. 0.89

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 3.1e-05
     DUF2631  18 vPSaaWGWsgespkttriaGlisvlallam 47 
                  PSaa GWs +  + +  +G++s + l++ 
  KOO24118.1 252 LPSAALGWSSLPLRCWAPVGFFSLFGLVIA 281
                 5*********************99988765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (395 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       528  (0.0294495); expected 358.6 (0.02)
Passed bias filter:                      255  (0.0142228); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.45u 0.26s 00:00:00.71 Elapsed: 00:00:00.41
# Mc/sec: 2880.14
//
Query:       KOO24119.1  [L=229]
Description: hypothetical protein Ctob_004910 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (229 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       265  (0.0147805); expected 358.6 (0.02)
Passed bias filter:                      210  (0.0117129); expected 358.6 (0.02)
Passed Vit filter:                         9  (0.00050198); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.40u 0.23s 00:00:00.63 Elapsed: 00:00:00.40
# Mc/sec: 1712.78
//
Query:       KOO24120.1  [L=248]
Description: glycerol transport activity [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.3e-29  101.8  13.4    3.5e-27   95.6  13.4    2.1  1  MIP       Major intrinsic protein


Domain annotation for each model (and alignments):
>> MIP  Major intrinsic protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   95.6  13.4     2e-31   3.5e-27      46     226 ..      30     224 ..       7     225 .. 0.89

  Alignments for each domain:
  == domain 1  score: 95.6 bits;  conditional E-value: 2e-31
                 HHHHHHHHHHHHHHHHHHHHHHCHT-S-SHHHHHHHHHTTSSSHHHHHHHHHHHHHHHHHHHHHHHHHCHHH................HHHTTTTSSSS CS
         MIP  46 tleavalafglalavlvylaagiSGaHlNPavTlallvarkisllrailYivaQllGaivaaallklltkgl................esraglfansl 128
                 + e+v  + g++l+v ++++a+ SG+ lNPav  +l++++ ++ ++a lY vaQ+ G+i+aa l  ++                    +        +l
  KOO24120.1  30 GTEQVGPVNGVVLTVCIFMTAKYSGGNLNPAVSAGLCLTGILPPFKAGLYAVAQISGSIAAAFLAAFIDLDEnldaagldnwgeykmpYLIPPGCHRTL 128
                 4566667789999**********************************************999887777666689**********999877777777677 PP

                 STTSSHHHHHHHHHHHHHHHHHHHHHHCSTTSSSSTCHGHHHHHHHHHHHHHHHHHHHHST-SSHHHHHHHHHHHTH.STTTTHHHHHHHHHHHHHHHH CS
         MIP 129 kpglsagqalvvEiiltfvLvlvvfaltddkrkvslgelaplaigllvaliilvgipltGaamNpArslgpavvlnk.fedhwvylvGPliGailgalv 226
                  + +  g+ +v+E++ tfvLv++v a++  k  +   + ap aigl++++++  ++++tG   NpAr +gpa+v     ++ w yl++ l+G++l++l 
  KOO24120.1 129 PDRVR-GSVFVLEMLGTFVLVATVHAVAVAKPGFG--DHAPFAIGLAIVVVVGGAGHITGGFFNPARFIGPALVFGCdLHNAWLYLIAQLLGGALASLN 224
                 77776.9*********************9998887..569********************************998644******************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (248 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       407  (0.0227007); expected 358.6 (0.02)
Passed bias filter:                      249  (0.0138881); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.24s 00:00:00.67 Elapsed: 00:00:00.40
# Mc/sec: 1856.80
//
Query:       KOO24121.1  [L=327]
Description: hypothetical protein Ctob_004912 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (327 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       641  (0.0357521); expected 358.6 (0.02)
Passed bias filter:                      391  (0.0218082); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.44u 0.26s 00:00:00.70 Elapsed: 00:00:00.40
# Mc/sec: 2447.35
//
Query:       KOO24122.1  [L=393]
Description: spermidine synthase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      2e-34  118.6   0.0    3.6e-34  117.8   0.0    1.4  1  Spermine_synth   Spermine/spermidine synthase domain
    1.6e-08   34.3   0.2    3.1e-08   33.4   0.2    1.5  1  Spermine_synt_N  Spermidine synthase tetramerisation domain
     0.0006   20.5   0.0     0.0011   19.6   0.0    1.5  1  Methyltransf_25  Methyltransferase domain
  ------ inclusion threshold ------
      0.028   14.3   0.0      0.056   13.3   0.0    1.6  1  Methyltransf_23  Methyltransferase domain
      0.031   15.0   0.0      0.059   14.1   0.0    1.5  1  Methyltransf_12  Methyltransferase domain
      0.064   12.3   0.0      0.095   11.8   0.0    1.2  1  RrnaAD           Ribosomal RNA adenine dimethylase
       0.16   13.0   0.0        0.3   12.1   0.0    1.5  1  Methyltransf_24  Methyltransferase domain


Domain annotation for each model (and alignments):
>> Spermine_synth  Spermine/spermidine synthase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  117.8   0.0   1.4e-37   3.6e-34       2     181 ..     135     319 ..     134     327 .. 0.96

  Alignments for each domain:
  == domain 1  score: 117.8 bits;  conditional E-value: 1.4e-37
                     HHHHHHHHHHHHCCSSST-EEEEESSTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHSHHHHTTCGGCTTEEEEESTCHHHHCTCSS..... CS
  Spermine_synth   2 faykemiahvplmlhknpkevLiiGGgDGgvlrevvkhntvekitlvdiDqkvidfskkflpslaisafndarvklvlgdgfkflkayek..... 91 
                       y+e ++h  l   ++ ++vL++GGgDGg++ ++vk++++ +++ v+iD+ vi+f k f+p  a   ++d+rv lv++ + +f+++        
      KOO24122.1 135 SNYHESLVHTTLAYLPEARRVLVVGGGDGGTVTQLVKYPNLVEVVWVEIDEVVIQFAKDFFPRQARA-LQDPRVRLVVQNAATFVQEARYpitgv 228
                     57**************************************************************999.******************999889999 PP

                     ...-EEEEEEECCSTTCSSCGCSSHHHHHHHHHTEEEEEEEEEEEEETTTCHHHHHHHHHHHHTTSSCEEEEEEEETTTSCSCEEEEEEEESS CS
  Spermine_synth  92 ...kfdvvivdsldpvgpaenlFskeffdllkkvlkedGviilqaekpelekelvinvdksgkqvfalqvepsavlvPtylsgminfvveskk 181
                        +fd++  ds+d    a+ lF+ +f+  +k  l + Gv+    ++p   +  v +   +++ +f+  ++++ v+ Pty sg ++f+++s++
      KOO24122.1 229 nngTFDAILIDSTD-FNAAQPLFTGNFYADCKALLAPRGVLAFNLDSPQWGQVRVASGADQMSRLFR-HAYVFQVYQPTYASGHYSFMMASDQ 319
                     **************.667777*********************************************9.*********************9987 PP

>> Spermine_synt_N  Spermidine synthase tetramerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.4   0.2   1.2e-11   3.1e-08       5      53 .]      82     131 ..      80     131 .. 0.90

  Alignments for each domain:
  == domain 1  score: 33.4 bits;  conditional E-value: 1.2e-11
                      EEEE.TTEEEEEEEEEEEEEEEESSSEEEEEEETTTEEEEEETTEEEEET CS
  Spermine_synt_N   5 eisd.pglalelkVekvLyeekSeyQdieifesktfGkvLvLDgvvqltE 53 
                      e+s+    a  ++V+++L +++++yQ ++++e+  fGk+L++Dg+++ tE
       KOO24122.1  82 EYSEvTSSAAIYRVSALLKTVQTPYQLVQVYETFFFGKILTIDGALMITE 131
                      55556667889*************************************98 PP

>> Methyltransf_25  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.6   0.0   4.3e-07    0.0011       1      97 []     155     266 ..     155     266 .. 0.79

  Alignments for each domain:
  == domain 1  score: 19.6 bits;  conditional E-value: 4.3e-07
                      EEEET-TTSHHHHHHHCTSTSSEEEEEESSHHHHHHHH....HHHHH.TTTTEEEEESBCCGBS.........SSTTTEEEEEEEST.GGGSSH CS
  Methyltransf_25   1 vLdlGcGtGrltlalakrlgkakvtgvDiseemleaar....eraee.eglnvefvqgdaedlp.........fedgsfDlvvssga.lhhlsd 79 
                      vL +G G G ++ +l k  +  +v+ v+i+e  ++ a+    ++a++ ++++v++v+++a ++           ++g+fD++++  + ++  ++
       KOO24122.1 155 VLVVGGGDGGTVTQLVKYPNLVEVVWVEIDEVVIQFAKdffpRQARAlQDPRVRLVVQNAATFVqearypitgVNNGTFDAILIDSTdFNAAQP 248
                      899*************99779*****************6665333335677******99966422233335456999*******7777888777 PP

                      HHHHHHHHHHHHHEEEEE CS
  Methyltransf_25  80 edlekalkeiarvLkpgG 97 
                        + ++++ ++ +L p G
       KOO24122.1 249 LFTGNFYADCKALLAPRG 266
                      777889999999999887 PP

>> Methyltransf_23  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.0   2.2e-05     0.056       9      86 ..     138     236 ..     130     332 .. 0.77

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 2.2e-05
  Methyltransf_23   9 lsdklerllpklraggrvLdiGcGtG.illevl.rengfsvtgvDlspeaveiae..............kakkaqkdqfdeqeaae.....pqg 81 
                         +++ +l++l++  rvL +G G+G +++++   +n ++v+ v+++++ ++ a+               +   q+  ++ qea++     ++g
       KOO24122.1 138 HESLVHTTLAYLPEARRVLVVGGGDGgTVTQLVkYPNLVEVVWVEIDEVVIQFAKdffprqaralqdprVRLVVQNAATFVQEARYpitgvNNG 231
                      56778899999***************8888888555677*********9999988887777777777773333333333344444456666677 PP

  Methyltransf_23  82 kfdlI 86 
                      +fd I
       KOO24122.1 232 TFDAI 236
                      77766 PP

>> Methyltransf_12  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   0.0   2.3e-05     0.059       1      98 [.     156     267 ..     156     268 .. 0.74

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 2.3e-05
  Methyltransf_12   1 LeiGcGtGsllralleklpdieytgvDispsaiedakeklakr.ennnnnnvelealdlldldgg..........ssfDlvvas.nvlhhlkdi 82 
                      L +G+G+G ++  l ++   +e+++v+i++ +i+ ak  + ++ ++++  +v+l +++++   ++          ++fD++++    +++ +++
       KOO24122.1 156 LVVGGGDGGTVTQLVKYPNLVEVVWVEIDEVVIQFAKDFFPRQaRALQDPRVRLVVQNAATFVQEarypitgvnnGTFDAILIDsTDFNAAQPL 249
                      569**************999*************9999988654156777888888888776666688999999999999998651334444322 PP

  Methyltransf_12  83 r..evldnirklLkpgGr 98 
                          + + +++lL+p G+
       KOO24122.1 250 FtgNFYADCKALLAPRGV 267
                      223555566666666665 PP

>> RrnaAD  Ribosomal RNA adenine dimethylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   3.7e-05     0.095      19      88 ..     137     217 ..     131     223 .. 0.80

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 3.7e-05
                 HHHHHHHH-GG...TTSEEEEES-TTTCCHHHHHCC-..SEEEEE-S-HHHHHHHHCHTT......TCCCEEEE-S-CCGH CS
      RrnaAD  19 ineIldklnle...ekltvleigpGkGilTeeLakra..kqvvvlElderLakllqkkls......kdeklkvvhqDflkf 88 
                 + e l+++ l    e   vl +g G G + ++L+k+    +vv +E+de+ +++ ++ +       +d+++ +v q++ +f
  KOO24122.1 137 YHESLVHTTLAylpEARRVLVVGGGDGGTVTQLVKYPnlVEVVWVEIDEVVIQFAKDFFPrqaralQDPRVRLVVQNAATF 217
                 55566666666666999*******************98899************9999444777777888888888887766 PP

>> Methyltransf_24  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   0.00012       0.3      29     103 ..     181     270 ..     120     271 .. 0.75

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 0.00012
  Methyltransf_24  29 vdhdpgaeeaaalare.......aglddrvrlikadseealasla.......agsiDllfiDgghaaea.....vledleallprlapggvvlf 103
                      v+ d+    + ++a++       a  d rvrl+++++   +++ +       +g++D ++iD   + +a     + +++  +  +lap+gv+ f
       KOO24122.1 181 VEIDE---VVIQFAKDffprqarALQDPRVRLVVQNAATFVQEARypitgvnNGTFDAILIDST-DFNAaqplfTGNFYADCKALLAPRGVLAF 270
                      45555...444444434444454667789****9999888887777777888**********86.443312233666789999*******9987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (393 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       487  (0.0271627); expected 358.6 (0.02)
Passed bias filter:                      419  (0.02337); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.50u 0.25s 00:00:00.75 Elapsed: 00:00:00.41
# Mc/sec: 2849.14
//
Query:       KOO24123.1  [L=445]
Description: hypothetical protein Ctob_004909 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.31   11.4   6.4       0.51   10.7   4.0    2.8  2  STAS_2    STAS domain


Domain annotation for each model (and alignments):
>> STAS_2  STAS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   4.0   2.9e-05      0.51       5      71 ..     127     194 ..     112     202 .. 0.83
   2 ?   -1.9   0.0      0.25   4.5e+03       7      25 ..     239     257 ..     234     264 .. 0.74

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 2.9e-05
      STAS_2   5 Geldldtaaelreqlleal.aagaevvvDlsgvervDsaalalLlalartarargrrlvlrglppalr 71 
                 G+  +++ +e ++++++++ aa a+++   +gverv   al+++++l + a+    ++v+  lp+ +r
  KOO24123.1 127 GDAARAEFDETLDAVAARIsAAEARCREARRGVERVEGVALGAVASLEASAEVLSNPVVCNQLPDKVR 194
                 555556666666666666655569999999***********************************998 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 0.25
      STAS_2   7 ldldtaaelreqllealaa 25 
                 +d+d+ a+lr + ++ l  
  KOO24123.1 239 WDADQMAQLRPERAPSLEE 257
                 7889999999998888844 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (445 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       838  (0.0467399); expected 358.6 (0.02)
Passed bias filter:                      373  (0.0208043); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.50u 0.27s 00:00:00.77 Elapsed: 00:00:00.42
# Mc/sec: 3175.99
//
Query:       KOO24124.1  [L=240]
Description: thioredoxin-like protein 1, partial [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.8e-35  121.4   0.0    4.8e-35  121.0   0.0    1.1  1  PITH      PITH domain


Domain annotation for each model (and alignments):
>> PITH  PITH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  121.0   0.0   2.7e-39   4.8e-35       1     151 [.      75     218 ..      75     219 .. 0.89

  Alignments for each domain:
  == domain 1  score: 121.0 bits;  conditional E-value: 2.7e-39
        PITH   1 LyqyIdlkkveclNeseegsvkkvlkksweerldekkyleSdaDeqLlihipFtqsvklksllikstkkeeeesaPktiklfkNrkkkldFdda.s.ep 97 
                 L+++I+++++e+lN+++ ++v ++lk+  ++++    ++eSdaDeqLli+i F+ +vk++s+ ik++    +  aPk++klf+N++ ++d +d  s  +
  KOO24124.1  75 LLESIHWSGCEVLNATKTDAVGSLLKQGLRDQE--LMIVESDADEQLLISIAFKAKVKVHSIAIKAPA---DGRAPKSLKLFVNKP-SMDCSDGeSmVA 167
                 7899**********999999*****88885433..458**************************9975...89***********75.56*****44449 PP

        PITH  98 tqeielseedeeketvelplrfvkfqnvssLtlffednnegedvtridyiglkG 151
                 +qeiels+e+     ++l+l+fvkfqnv  Ltlf+  n++ ed+t ++ i+l+G
  KOO24124.1 168 DQEIELSAEQ---LGERLELKFVKFQNVDRLTLFIHANQGAEDSTALSGIKLWG 218
                 *****99554...3459********************9999************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (240 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       390  (0.0217525); expected 358.6 (0.02)
Passed bias filter:                      340  (0.0189637); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.25s 00:00:00.68 Elapsed: 00:00:00.42
# Mc/sec: 1722.65
//
Query:       KOO24125.1  [L=403]
Description: hypothetical protein Ctob_004907 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (403 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       685  (0.0382063); expected 358.6 (0.02)
Passed bias filter:                      206  (0.0114898); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.51u 0.25s 00:00:00.76 Elapsed: 00:00:00.44
# Mc/sec: 2763.65
//
Query:       KOO24126.1  [L=288]
Description: serine threonine-protein kinase mst4-like protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.2e-71  241.2   0.0    1.5e-71  240.9   0.0    1.1  1  Pkinase         Protein kinase domain
    1.5e-50  171.9   0.0    1.9e-50  171.5   0.0    1.0  1  Pkinase_Tyr     Protein tyrosine kinase
    8.3e-06   25.3   0.1    0.00091   18.6   0.0    2.3  2  Kinase-like     Kinase-like
    3.4e-05   22.8   0.0    5.3e-05   22.2   0.0    1.2  1  Pkinase_fungal  Fungal protein kinase
    0.00046   20.2   0.0       0.16   11.9   0.0    2.7  3  APH             Phosphotransferase enzyme family
     0.0019   17.2   0.0       0.02   13.9   0.0    2.0  1  Haspin_kinase   Haspin like kinase domain
  ------ inclusion threshold ------
      0.037   14.2   0.0      0.079   13.1   0.0    1.5  1  ABC1            ABC1 family
      0.098   12.0   0.0       0.64    9.3   0.0    2.0  2  Kdo             Lipopolysaccharide kinase (Kdo/WaaP) family


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  240.9   0.0   6.6e-75   1.5e-71       1     264 []       3     254 ..       3     254 .. 0.93

  Alignments for each domain:
  == domain 1  score: 240.9 bits;  conditional E-value: 6.6e-75
                 EEEEEEEEEESSEEEEEEEETTTTEEEEEEEEECHCHCHHHHHHHHHHHHHHHHHSCTTB--EEEEEEESSEEEEEEE--TTEBHHHHHHHHSS--HHH CS
     Pkinase   1 yekleklGeGsfGkVykaveketgkivAvKkikkekakkkkekkvlrEikilkklkhpnivrlyevfeekdelylvleyveggeladllerkgslseee 99 
                 ye +e++G+GsfG+V++++++etg++vA+K+i+ e+a+++ e ++++Ei++++++++p++ r+y+++ + ++l++++eyv gg++ d++   g + e++
  KOO24126.1   3 YECVERIGKGSFGEVFRGHHTETGETVAIKVIDLEQAEDEIE-DIQQEIAVMAQCNSPYVTRYYDSYVSGTKLWIIMEYVGGGSVLDMMD-AGPIVEAQ 99 
                 67789*********************************9885.9*********************************************7.699***** PP

                 HHHHHHHHHHHHHHHHHTTEE-SS-SGGGEEEETTTEEEE-SGTTSEESSSSCS.BCTTTSCGGGS-HHHHTTSCBSHHHHHHHHHHHHHHHHHSS-ST CS
     Pkinase 100 akkiakqilegleylHskgiiHrDlKpeNiLidekgelKitDFGlakelesssk.ltsfvgtseYlAPEvlkeneyskkvDvWslGvilyelltgkppf 197
                 +  i+ ++l+gl+ylH +g iHrD+K +NiL++++ge+K++DFG+a +++ + +   +fvgt+ ++APEv+++ +y +k+D+WslG+  +e+++g+pp 
  KOO24126.1 100 IATILCETLKGLDYLHTQGKIHRDIKAANILLSRTGEVKLADFGVAGQITATMSkCCTFVGTPFWMAPEVIRQDQYNTKADIWSLGISALEMVMGEPPH 198
                 *************************************************9988779******************************************* PP

                 TTSSHHHHHHHHHHTHHHHHHHCTSHH...HHHTTS-HHHHHHHHHHT-SSGCCSTTHHHHHTSGGG CS
     Pkinase 198 sgekgkekvekeldqlekilkilgetkeklpeaseiseeakdllkkllkkdpkkRltaeellqhpyl 264
                 +   ++    + ++     l ++ + +  +   ++ s+ ++d++ ++l++d kkR++a+ell+h+++
  KOO24126.1 199 A---DE----HPMRV----LLLIPKADPPTLSGEQWSPAFRDFVAQCLQMDAKKRPSAKELLHHRWI 254
                 *...22....22333....22223446667777889******************************7 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  171.5   0.0   8.6e-54   1.9e-50       4     257 ..       6     250 ..       3     251 .. 0.95

  Alignments for each domain:
  == domain 1  score: 171.5 bits;  conditional E-value: 8.6e-54
                  EEEEEEESSEEEEEEEEETTTTSSEEEEEEEEESTTSSHHHHHHHHHHHHHHHTS-BTTB--EEEEEESSSSEEEEEE--TTEBHHHHHHHTCTTTSB CS
  Pkinase_Tyr   4 gkklGeGafGkVvegtlkgekekkevkVavKtlkeeateeekeelleeakimkklkhpnivkllgvctkeepllivteyvkgGdLlkfLrkkekeklt 101
                   +++G+G+fG+V++g+ +    ++ ++Va+K+++ e+ e+e e++ +e+++m +++ p + +++  ++++ +l+i++eyv gG++l+++ +    ++ 
   KOO24126.1   6 VERIGKGSFGEVFRGHHT----ETGETVAIKVIDLEQAEDEIEDIQQEIAVMAQCNSPYVTRYYDSYVSGTKLWIIMEYVGGGSVLDMMDAG---PIV 96 
                  689*************99....9999***************************************************************987...999 PP

                  HHHHHHHHHHHHHHHHHHHHTTEEEST-SGGGEEEEETTEEEE-STTTHEETTTSSEEEETTSSTSGGGGS-HHHHHHSEEEHHHHHHHHHHHHHHHH CS
  Pkinase_Tyr 102 lkdllsfalqvAkGmeyLeskklvHrdlaarNvLlsenkvvkisDfGLardiekddeyvkkeeaklpvkWmapEslkekkftsksDvWsfGvllwEif 199
                    ++  +  +  kG++yL+++  +Hrd+ a N+Lls++  vk++DfG+a +i  + +++k  +      WmapE++++ ++++k+D+Ws G+   E++
   KOO24126.1  97 EAQIATILCETLKGLDYLHTQGKIHRDIKAANILLSRTGEVKLADFGVAGQI--TATMSKCCTFVGTPFWMAPEVIRQDQYNTKADIWSLGISALEMV 192
                  99**************************************************..556666666777889****************************9 PP

                  TTSSGTTTTSHHHHHHHHH.HTTEES-BBTTSBHHHHHHHHHHT-SSGGGS--HHHHHH CS
  Pkinase_Tyr 200 tlgespypglkneevlekl.kegkrlekpekcpeelyelmkkcweedpeeRptfselve 257
                    ge p+++ ++++vl  + k++      e++++++ +++ +c++ d+++Rp+ +el++
   KOO24126.1 193 M-GEPPHADEHPMRVLLLIpKADPPTLSGEQWSPAFRDFVAQCLQMDAKKRPSAKELLH 250
                  9.*****************8888999999*************************99976 PP

>> Kinase-like  Kinase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.3   0.0    0.0093        21      18      62 ..       7      49 ..       3      69 .. 0.79
   2 !   18.6   0.0   4.1e-07   0.00091     157     247 ..     111     195 ..      95     205 .. 0.74

  Alignments for each domain:
  == domain 1  score: 4.3 bits;  conditional E-value: 0.0093
  Kinase-like 18 ellkkgdrsvvfevkdqetgeplavkvfllpseaskkdlerlkeq 62
                 e ++kg ++ vf+ +  etge +a+kv  l+   ++ ++e ++++
   KOO24126.1  7 ERIGKGSFGEVFRGHHTETGETVAIKVIDLE--QAEDEIEDIQQE 49
                 67999*********************98775..566677766554 PP

  == domain 2  score: 18.6 bits;  conditional E-value: 4.1e-07
  Kinase-like 157 aanLqakglvhgkftvdnllldekgglmlggftaLvragtkvvlsevekgfaPpEllgsrggytrknktkmthkldaWqlGlviyriwclk 247
                    +L+ +g +h ++++ n+ll + g ++l +f+   +  + +  s+ +     p  ++        ++ ++  k d W lG++++ +   +
   KOO24126.1 111 LDYLHTQGKIHRDIKAANILLSRTGEVKLADFGVAGQITATM--SKCCTFVGTPFWMAPEVI----RQDQYNTKADIWSLGISALEMVMGE 195
                  579*****************************9754443333..444433334444444333....6789999***********9987655 PP

>> Pkinase_fungal  Fungal protein kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.2   0.0   2.4e-08   5.3e-05     312     397 ..     104     181 ..      96     184 .. 0.86

  Alignments for each domain:
  == domain 1  score: 22.2 bits;  conditional E-value: 2.4e-08
  Pkinase_fungal 312 lrDaIkghrsLflkagiLHrDiSenNilitdskkegerkglLiDLDlakelsddssesgarertGTleFmaievlkgeeHsyrhDL 397
                     l + +kg+  L+ ++g +HrDi + Nil+      ++ +  L+D+ +a ++    + s+ ++ +GT+ +ma ev+++ + +   D+
      KOO24126.1 104 LCETLKGLDYLH-TQGKIHRDIKAANILLS-----RTGEVKLADFGVAGQITA--TMSKCCTFVGTPFWMAPEVIRQDQYNTKADI 181
                     6778999*****.88888************.....788999***********5..677779***************8777777666 PP

>> APH  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.9   0.0   7.2e-05      0.16      18      92 ..      22      93 ..       6     118 .. 0.74
   2 ?    4.7   0.0     0.011        24     169     194 ..     120     143 ..     111     152 .. 0.77
   3 ?   -0.6   0.0      0.45     1e+03     106     145 ..     211     245 ..     182     267 .. 0.64

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 7.2e-05
                ETT.-.-EEEEEE-TTS-HHHHHHHHHHHHHHHHTT-B--B-CTTBS-EEETTE.EEEEEE----EE-SS..HHHHHHHH CS
         APH 18 tpa.g.ryvlrrnpparaaeeirrevallrlLakagvpvPevlagdtddeeigl.lfalieyvpgrsllr..klsaaqlp 92
                +++ g +++ +++  ++a+ ei++++++ +++a+ + p    ++   d +++g+ l+ ++eyv+g s+l+        ++
  KOO24126.1 22 HTEtGeTVAIKVIDLEQAEDEIEDIQQEIAVMAQCNSPYVTRYY---DSYVSGTkLWIIMEYVGGGSVLDmmD-----AG 93
                33334588899999999******************995544455...5788888899*************431.....22 PP

  == domain 2  score: 4.7 bits;  conditional E-value: 0.011
                 E-SS-SGGGEEEC..TTEEEEE---T CS
         APH 169 lHgDlhpgNllvdpddgrvtGviDfe 194
                 +H+D++  N+l+  + g+v  + Df+
  KOO24126.1 120 IHRDIKAANILLS-RTGEV-KLADFG 143
                 8***********9.55555.356666 PP

  == domain 3  score: -0.6 bits;  conditional E-value: 0.45
                 HCH.-STTTB-SHHCHTCCHHHHHHCHHHCCCGCCTCCHH CS
         APH 106 hqvdpaalpladflaqdlellrqlesatarllaselldll 145
                   +    +p++  ++q+   +r++++++ + +a + +  +
  KOO24126.1 211 PKA----DPPTLSGEQWSPAFRDFVAQCLQMDAKKRPS-A 245
                 344....4455555555555566666666555555555.3 PP

>> Haspin_kinase  Haspin like kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.9   0.0   8.7e-06      0.02     109     254 ..      10     145 ..       2     154 .. 0.74

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 8.7e-06
  Haspin_kinase 109 seklssevyqtke..kdkevvlKviplevledvtiskelslkelkslklvkgtypglllllqdkvlkekpdfyseqqlflvlllkdkGtdLeevkl 202
                    ++++++ev++ ++  + ++v++Kvi le  ed + +    ++  ++++++ +  +  + +  d +       +s ++l ++++   +G+ L+ +  
     KOO24126.1  10 GKGSFGEVFRGHHteTGETVAIKVIDLEQAEDEIED----IQ--QEIAVMAQCNSPYVTRYYDSY-------VSGTKLWIIMEYVGGGSVLDMMDA 92 
                    677889999988866778899999999766664444....21..233334333233333333333.......345689999999999**9999966 PP

  Haspin_kinase 203 ksw..kqalsifwqivkiLyvaEtkfeFEHRdLhldniLvdknlnvtlidlkls 254
                      +  +q+  i+ +++k L    t+ +  HRd++  niL+ ++++v l d+ ++
     KOO24126.1  93 GPIveAQIATILCETLKGLDYLHTQGKI-HRDIKAANILLSRTGEVKLADFGVA 145
                    443228999***************9997.*********************9765 PP

>> ABC1  ABC1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.0   3.5e-05     0.079      19      55 ..       9      46 ..       2      77 .. 0.79

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 3.5e-05
        ABC1 19 iAaASiaqVhrAklk.sgeeVavKvqrpgvkkriksDl 55
                i+ +S++ V+r++   +ge+Va+Kv   + ++   +D+
  KOO24126.1  9 IGKGSFGEVFRGHHTeTGETVAIKVIDLEQAEDEIEDI 46
                8899********98879********8655555555554 PP

>> Kdo  Lipopolysaccharide kinase (Kdo/WaaP) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.0   0.0      0.21   4.8e+02     153     173 ..      23      43 ..      21      57 .. 0.78
   2 ?    9.3   0.0   0.00029      0.64     133     168 ..     113     144 ..      76     154 .. 0.86

  Alignments for each domain:
  == domain 1  score: -0.0 bits;  conditional E-value: 0.21
         Kdo 153 qeeeeeaeiwliDldkarlrl 173
                 +e +e   i +iDl++a+  +
  KOO24126.1  23 TETGETVAIKVIDLEQAEDEI 43 
                 4556888999******99877 PP

  == domain 2  score: 9.3 bits;  conditional E-value: 0.00029
         Kdo 133 klhragvnHadlyaknillqqeeeeeaeiwliDldk 168
                  lh  g  H+d+ a nill  ++    e+ l D+  
  KOO24126.1 113 YLHTQGKIHRDIKAANILLSRTG----EVKLADFGV 144
                 69*******************99....888888865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (288 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       513  (0.0286129); expected 358.6 (0.02)
Passed bias filter:                      472  (0.0263261); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.54u 0.23s 00:00:00.77 Elapsed: 00:00:00.43
# Mc/sec: 1989.06
//
Query:       KOO24127.1  [L=432]
Description: mob kinase activator 1a [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.6e-75  252.1   0.1    3.5e-75  251.7   0.1    1.2  1  Mob1_phocein  Mob1/phocein family
    6.8e-35  119.6   5.5    1.2e-34  118.9   5.5    1.3  1  DUF1077       Protein of unknown function (DUF1077)


Domain annotation for each model (and alignments):
>> Mob1_phocein  Mob1/phocein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  251.7   0.1   3.9e-79   3.5e-75       1     168 [.      35     206 ..      35     207 .. 0.96

  Alignments for each domain:
  == domain 1  score: 251.7 bits;  conditional E-value: 3.9e-79
                   xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxx. RF
  Mob1_phocein   1 eatlgsgdlkeavklPkgedlneWlavhvvdffneinllygtisefcteqscptmsagpkyeYlwadee.vkkpvklsApeYidllmdwiesqlnd. 95 
                   +atlg+g+l++av+lP+ged++eWlav++vdffneinllyg+i+efcte+ cp+m agpk+eY wad + +kkp+++sAp+Y+d lm+w+++ql+d 
    KOO24127.1  35 QATLGTGNLHDAVTLPEGEDEREWLAVNTVDFFNEINLLYGVIAEFCTESDCPVMCAGPKFEYMWADGHtIKKPITVSAPRYVDFLMQWVQAQLDDe 131
                   699****************************************************************845*************************** PP

                   .xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxx RF
  Mob1_phocein  96 .lfpskagspfpknflkvvkkilkrlfrvyaHiYihHfeeiaeleleahlntcfkhfvlfvkeFkLidkk.elep 168
                    +fp+++g+pfp++f + v++i+krlfrvyaHiY++Hfe++a+l++e+hlntcfkh+++fv eF+Li +k el+p
    KOO24127.1 132 aIFPTEIGVPFPQDFVDRVQNIFKRLFRVYAHIYYCHFERMAALGAEPHLNTCFKHYMYFVYEFNLIPNKqELAP 206
                   *******************************************************************76516666 PP

>> DUF1077  Protein of unknown function (DUF1077)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  118.9   5.5   1.3e-38   1.2e-34       4     116 ..     302     418 ..     299     420 .. 0.93

  Alignments for each domain:
  == domain 1  score: 118.9 bits;  conditional E-value: 1.3e-38
     DUF1077   4 eekeelkakkaweialapakslpmnlfmlYmsGnslqifsimmvlmllvnpikallsvnkaFkkleseks....ksklllqklvyvllqllllalglyk 98 
                  ++ +lk kka e+a +p k+ +m++fml+msG++++ifsim+++m+++np+k++l+v++aF++++++k     k++ll++kl++v+++ll++  +lyk
  KOO24127.1 302 VDMMQLKLKKARELAWSPGKNFMMTAFMLWMSGSGVHIFSIMITGMAIYNPVKSALTVSTAFSRFDDAKMspadKTSLLFSKLTFVVMNLLAMCGALYK 400
                 56789*************************************************************96654444669999******************* PP

     DUF1077  99 lnsmGLLPttssDwlafe 116
                 ++ mGLLP+t sDw++f 
  KOO24127.1 401 MSLMGLLPNTPSDWVSFL 418
                 ***************996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (432 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       421  (0.0234815); expected 358.6 (0.02)
Passed bias filter:                      333  (0.0185733); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.50u 0.22s 00:00:00.72 Elapsed: 00:00:00.41
# Mc/sec: 3169.56
//
Query:       KOO24128.1  [L=360]
Description: wd repeat-containing protein 92 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    6.4e-06   26.8  12.2      0.026   15.4   0.3    5.2  4  WD40         WD domain, G-beta repeat
    0.00044   20.5   0.1       0.37   11.1   0.0    3.6  3  ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain
     0.0062   16.4   0.2      0.026   14.4   0.2    2.1  1  PQQ          PQQ enzyme repeat
  ------ inclusion threshold ------
      0.012   15.2   0.0      0.018   14.6   0.0    1.3  1  PQQ_2        PQQ-like domain


Domain annotation for each model (and alignments):
>> WD40  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.3   5.8e-06     0.026       7      38 .]     111     148 ..     105     148 .. 0.75
   2 ?    4.7   0.4     0.014        63      18      38 .]     179     199 ..     163     199 .. 0.80
   3 !    7.3   0.2    0.0021       9.6       9      38 .]     260     291 ..     246     291 .. 0.70
   4 ?    4.1   0.0     0.021        96       5      36 ..     320     351 ..     297     351 .. 0.72

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 5.8e-06
                 EESSSS.EEEEEEETTSSE.......EEEEETTSEEEEEE CS
        WD40   7 ltGHss.vtslafspdgaw.......lasGsdDgtvriWd 38 
                  ++Hs  ++++  +  g +       +++G++Dg v++Wd
  KOO24128.1 111 PDAHSTiINCI--DGCGGLrgagapeIVTGGRDGCVHVWD 148
                 56995547***..444444777778899***********9 PP

  == domain 2  score: 4.7 bits;  conditional E-value: 0.014
                 EETTSSEEEEEETTSEEEEEE CS
        WD40  18 fspdgawlasGsdDgtvriWd 38 
                  s d + +++G d+g v+++d
  KOO24128.1 179 HSADDRVVCAGYDNGDVKLFD 199
                 7888889999999******98 PP

  == domain 3  score: 7.3 bits;  conditional E-value: 0.0021
                 SS.SSEEEEE.EETTSSEEEEEETTSEEEEEE CS
        WD40   9 GH.ssvtsla.fspdgawlasGsdDgtvriWd 38 
                 +H s v++++  +++ + +++++ +g++ +W+
  KOO24128.1 260 AHeSTVWACRhLPQNRDVFMTCGGNGSLELWK 291
                 787779999865555555555544*******6 PP

  == domain 4  score: 4.1 bits;  conditional E-value: 0.021
                 EEEESSSSEEEEEEETTSSEEEE.EETTSEEEE CS
        WD40   5 rtltGHssvtslafspdgawlas.GsdDgtvri 36 
                 +t++++ +v s+++++d+  l+  G+ D+tvr+
  KOO24128.1 320 KTFSTQ-PVASFDWNSDKEGLCVmGCLDQTVRV 351
                 445555.67788777777776423888****97 PP

>> ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.1   0.0   8.3e-05      0.37      47      85 ..     180     216 ..     145     223 .. 0.88
   2 ?    0.9   0.0      0.12   5.6e+02      53      89 ..     230     266 ..     225     269 .. 0.81
   3 ?    3.8   0.0     0.016        71      34      65 ..     320     352 ..     308     359 .. 0.81

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 8.3e-05
  ANAPC4_WD40  47 kpdgklLavaysdgevrlldaesgkvvhslsvksekavt 85 
                  + d+++ + +y++g v+l+d   gk+  + +v++   v+
   KOO24128.1 180 SADDRVVCAGYDNGDVKLFDLAAGKIRWETNVSNG--VC 216
                  6799**********************999988877..55 PP

  == domain 2  score: 0.9 bits;  conditional E-value: 0.12
  ANAPC4_WD40  53 LavaysdgevrlldaesgkvvhslsvksekavtclgW 89 
                  L++ + +++ rl+d+ + + vh +s  s+ a  +  W
   KOO24128.1 230 LVITTLESRYRLYDMRTHHPVHGYSFLSQAAHESTVW 266
                  7888899999************999888765555555 PP

  == domain 3  score: 3.8 bits;  conditional E-value: 0.016
  ANAPC4_WD40  34 edkedsevrsLaWkpdgklLav.aysdgevrll 65 
                  ++ + + v s+ W+ d + L+v ++ d +vr+l
   KOO24128.1 320 KTFSTQPVASFDWNSDKEGLCVmGCLDQTVRVL 352
                  5567899*********99998748999999876 PP

>> PQQ  PQQ enzyme repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.4   0.2   5.8e-06     0.026       2      31 ..     184     214 ..     183     215 .. 0.89

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 5.8e-06
                 EEEEE.ETTSEEEEEETTTCCEEEEEESSSC CS
         PQQ   2 vvylg.sadGylyAlDadTGkvlWrfktggp 31 
                 +v+++  ++G +  +D++ Gk++W++++++ 
  KOO24128.1 184 RVVCAgYDNGDVKLFDLAAGKIRWETNVSNG 214
                 678888********************99875 PP

>> PQQ_2  PQQ-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.6   0.0     4e-06     0.018      17      95 ..     171     246 ..     140     280 .. 0.71

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 4e-06
       PQQ_2  17 Wrvdlarplgggvsravlsggtlfva.tgggrlvaldaatGkvlWettlegpvvgaplvaegrv.....vvvasdgqlialdaed 95 
                 W+v+    +g  +   + +++++++a  + g +  +d a Gk++Wet +++ v+g  +++++ +     v  + + +++ +d ++
  KOO24128.1 171 WSVS----FGDAH---S-ADDRVVCAgYDNGDVKLFDLAAGKIRWETNVSNGVCGV-EFDRKDIamnklVITTLESRYRLYDMRT 246
                 3332....33333...5.555555553788999999*******************9.6666655444425555666666666555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (360 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       281  (0.0156729); expected 358.6 (0.02)
Passed bias filter:                      259  (0.0144459); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.45u 0.27s 00:00:00.72 Elapsed: 00:00:00.42
# Mc/sec: 2545.06
//
Query:       KOO24129.1  [L=211]
Description: hypothetical protein Ctob_012977 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (211 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       371  (0.0206927); expected 358.6 (0.02)
Passed bias filter:                      316  (0.0176251); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.40u 0.27s 00:00:00.67 Elapsed: 00:00:00.43
# Mc/sec: 1463.20
//
Query:       KOO24130.1  [L=2031]
Description: wd-40 repeat protein, partial [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    4.9e-28   96.8  13.2    2.9e-06   27.9   0.0    7.3  7  WD40         WD domain, G-beta repeat
     0.0074   15.2   3.4      0.014   14.4   0.5    2.7  3  PALB2_WD40   Partner and localizer of BRCA2 WD40 domain
  ------ inclusion threshold ------
      0.049   13.9   1.4         45    4.4   0.0    4.4  5  ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain


Domain annotation for each model (and alignments):
>> WD40  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.1      0.87   5.2e+03      16      36 ..    1701    1713 ..    1691    1715 .. 0.77
   2 !   18.0   0.0   6.5e-07    0.0039       1      37 [.    1719    1755 ..    1719    1756 .. 0.84
   3 !   23.3   0.1   1.4e-08   8.3e-05       1      38 []    1760    1796 ..    1760    1796 .. 0.84
   4 !    6.9   0.0    0.0021        12      13      38 .]    1823    1847 ..    1804    1847 .. 0.77
   5 !   16.1   0.1   2.6e-06     0.015       2      38 .]    1852    1887 ..    1851    1887 .. 0.87
   6 !    7.3   0.0    0.0015       9.1      22      38 .]    1916    1931 ..    1901    1931 .. 0.84
   7 !   27.9   0.0   4.8e-10   2.9e-06       2      38 .]    1936    1971 ..    1935    1971 .. 0.84

  Alignments for each domain:
  == domain 1  score: -1.4 bits;  conditional E-value: 0.87
                  EEEETTSSEEEEEETTSEEEE CS
        WD40   16 lafspdgawlasGsdDgtvri 36  
                  +        ++++++D+ vr+
  KOO24130.1 1701 V--------VSCAGRDKDVRL 1713
                  4........666699****98 PP

  == domain 2  score: 18.0 bits;  conditional E-value: 6.5e-07
                  TEEEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEE CS
        WD40    1 gqclrtltGH.ssvtslafspdgawlasGsdDgtvriW 37  
                  g cl+   GH   v++la  ++ ++ asGs D+t+r+W
  KOO24130.1 1719 GCCLKRMVGHtERVWALARTSEETL-ASGSADKTIRLW 1755
                  57999999**666****77777776.89********** PP

  == domain 3  score: 23.3 bits;  conditional E-value: 1.4e-08
                  TEEEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40    1 gqclrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38  
                  g+c+++++GH + v sl    +  +l+sGs D+tvr+Wd
  KOO24130.1 1760 GRCIGSFKGHkGAVMSL--LTYRGLLISGSQDQTVRLWD 1796
                  68********5559999..55555599***********9 PP

  == domain 4  score: 6.9 bits;  conditional E-value: 0.0021
                  EEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40   13 vtslafspdgawlasGsdDgtvriWd 38  
                  v++la  +  ++ a G++ gtvr+Wd
  KOO24130.1 1823 VHALAMARKDQL-AVGTWGGTVRLWD 1847
                  666655555555.67**********9 PP

  == domain 5  score: 16.1 bits;  conditional E-value: 2.6e-06
                  EEEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40    2 qclrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38  
                  +c+ tl++H + ++s+  + +g++ ++Gs Dg v++Wd
  KOO24130.1 1852 RCTATLDAHsGAIWSM-LHAEGRLYTAGS-DGVVKLWD 1887
                  6999*****555****.888888877899.*******9 PP

  == domain 6  score: 7.3 bits;  conditional E-value: 0.0015
                  SSEEEEEETTSEEEEEE CS
        WD40   22 gawlasGsdDgtvriWd 38  
                  g  l++G++D+ v++Wd
  KOO24130.1 1916 GL-LLTGGYDQLVKVWD 1931
                  44.558*99*******9 PP

  == domain 7  score: 27.9 bits;  conditional E-value: 4.8e-10
                  EEEEEEESS.SSEEEEEEETTSSE....EEEEETTSEEEEEE CS
        WD40    2 qclrtltGH.ssvtslafspdgaw....lasGsdDgtvriWd 38  
                  +cl +l GH +sv++l      a+    l+sGs Dgtvr+Wd
  KOO24130.1 1936 RCLNELPGHaGSVRCL------AFldsrLLSGSTDGTVRLWD 1971
                  799******999****......554444469**********9 PP

>> PALB2_WD40  Partner and localizer of BRCA2 WD40 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.0       0.2   1.2e+03     303     330 ..    1791    1818 ..    1781    1836 .. 0.74
   2 !   14.4   0.5   2.3e-06     0.014     301     330 ..    1840    1869 ..    1828    1886 .. 0.81
   3 ?   -0.6   0.1     0.082   4.9e+02     304     349 ..    1927    1969 ..    1917    1971 .. 0.79

  Alignments for each domain:
  == domain 1  score: -1.8 bits;  conditional E-value: 0.2
  PALB2_WD40  303 aiavWdlllghctalllpesdesWslvr 330 
                  ++ +Wdl  g c   l  + d +    r
  KOO24130.1 1791 TVRLWDLREGGCVGSLFQSGDAQSGASR 1818
                  799*********9999998887765555 PP

  == domain 2  score: 14.4 bits;  conditional E-value: 2.3e-06
  PALB2_WD40  301 sGaiavWdlllghctalllpesdesWslvr 330 
                   G++ +Wdl +++cta l ++s+  Ws+++
  KOO24130.1 1840 GGTVRLWDLHRSRCTATLDAHSGAIWSMLH 1869
                  689************************975 PP

  == domain 3  score: -0.6 bits;  conditional E-value: 0.082
  PALB2_WD40  304 iavWdlllghctalllpesdesWslvrWsgtdsqllaGqkdGsvlv 349 
                  + vWd  + +c   l+ ++++       +  ds+ll+G  dG+v +
  KOO24130.1 1927 VKVWDTRMMRCLNELPGHAGSVRC---LAFLDSRLLSGSTDGTVRL 1969
                  789**99999*8888877765544...4789***********9976 PP

>> ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.3       1.1   6.8e+03      11      39 ..     838     866 ..     837     872 .. 0.79
   2 ?    3.7   0.0     0.012        75      47      87 ..    1737    1777 ..    1724    1781 .. 0.84
   3 ?   -1.9   0.0      0.73   4.4e+03      52      76 ..    1782    1806 ..    1778    1813 .. 0.85
   4 ?    4.4   0.0    0.0076        45      36      87 ..    1818    1867 ..    1812    1872 .. 0.81
   5 ?   -0.5   0.0      0.26   1.5e+03      29      67 ..    1929    1972 ..    1914    1976 .. 0.72

  Alignments for each domain:
  == domain 1  score: -2.5 bits;  conditional E-value: 1.1
  ANAPC4_WD40  11 AlatedgellvfRlngqrvwtleedkeds 39 
                  A+a ++++l+  R++ qr  t ++++ ++
   KOO24130.1 838 AVAAHEQRLARARTESQRALTRTQQEVKQ 866
                  78999999**********99996655544 PP

  == domain 2  score: 3.7 bits;  conditional E-value: 0.012
  ANAPC4_WD40   47 kpdgklLavaysdgevrlldaesgkvvhslsvksekavtcl 87  
                   + +++ La + +d ++rl   ++g+++ s++ ++   ++ l
   KOO24130.1 1737 RTSEETLASGSADKTIRLWRPSEGRCIGSFKGHKGAVMSLL 1777
                   567899************************99999655555 PP

  == domain 3  score: -1.9 bits;  conditional E-value: 0.73
  ANAPC4_WD40   52 lLavaysdgevrlldaesgkvvhsl 76  
                   lL  + +d +vrl d  +g +v sl
   KOO24130.1 1782 LLISGSQDQTVRLWDLREGGCVGSL 1806
                   789999**********999988665 PP

  == domain 4  score: 4.4 bits;  conditional E-value: 0.0076
  ANAPC4_WD40   36 kedsevrsLaWkpdgklLavaysdgevrlldaesgkvvhslsvksekavtcl 87  
                    e + v++La   +++ Lav++  g+vrl d +  ++  +l+++s   + ++
   KOO24130.1 1818 RERNAVHALAMARKDQ-LAVGTWGGTVRLWDLHRSRCTATLDAHSGA-IWSM 1867
                   5667788888877766.8*************************9995.5444 PP

  == domain 5  score: -0.5 bits;  conditional E-value: 0.26
  ANAPC4_WD40   29 vwtl.......eedkedsevrsLaWkpdgklLavaysdgevrllda 67  
                   vw++       e +++ ++vr+La+   ++ L  +  dg+vrl d 
   KOO24130.1 1929 VWDTrmmrclnELPGHAGSVRCLAFL--DSRLLSGSTDGTVRLWDF 1972
                   55555555555556677788888874..566778999999999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (2031 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2910  (0.162307); expected 358.6 (0.02)
Passed bias filter:                      565  (0.0315132); expected 358.6 (0.02)
Passed Vit filter:                       195  (0.0108762); expected 17.9 (0.001)
Passed Fwd filter:                        81  (0.00451782); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 3.35u 0.44s 00:00:03.79 Elapsed: 00:00:00.81
# Mc/sec: 7568.09
//
Query:       KOO24131.1  [L=451]
Description: protein cal- isoform c [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.3e-23   80.9   0.4    1.9e-06   27.4   0.1    4.9  4  EF-hand_6     EF-hand domain
    6.4e-22   75.4   1.4    6.8e-06   25.3   0.0    4.8  4  EF-hand_1     EF hand
    1.9e-18   66.7   1.5    2.7e-08   34.1   0.0    3.0  3  EF-hand_7     EF-hand domain pair
    1.3e-17   62.4   5.9    0.00046   19.6   0.1    4.6  4  EF-hand_5     EF hand
    1.6e-12   47.1   4.9    5.9e-05   22.8   0.9    4.7  4  EF-hand_8     EF-hand domain pair
      0.002   18.2   0.3        1.9    8.7   0.0    3.3  3  Dockerin_1    Dockerin type I domain
  ------ inclusion threshold ------
      0.025   13.7   2.2        2.6    7.1   0.1    2.1  2  Rgp1          Rgp1
      0.034   14.1   0.0        0.1   12.6   0.0    1.8  1  DUF3859       Domain of unknown function (DUF3859)
      0.042   14.0   6.7       0.12   12.5   0.2    2.7  2  p25-alpha     p25-alpha
       0.12   10.4   4.6       0.18    9.9   4.6    1.1  1  DUF5525       Family of unknown function (DUF5525)
       0.15   11.6   0.0        2.3    7.9   0.0    2.4  2  LEM           LEM domain
       0.23   11.4   1.7         39    4.2   0.0    3.4  3  EF-hand_10    EF hand
       0.42   11.0   7.5       0.11   12.9   1.8    2.7  2  DUF1840       Domain of unknown function (DUF1840)
        1.2    9.5   4.7        1.5    9.2   0.1    3.4  4  PG_binding_2  Putative peptidoglycan binding domain


Domain annotation for each model (and alignments):
>> EF-hand_6  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.5   0.0     1e-06    0.0013       4      28 ..      93     117 ..      91     123 .. 0.92
   2 !   16.4   0.0   4.8e-06    0.0062       2      27 ..     129     154 ..     128     172 .. 0.93
   3 !   27.4   0.1   1.5e-09   1.9e-06       5      29 ..     251     274 ..     249     276 .. 0.91
   4 !   12.5   0.0   8.7e-05      0.11       7      27 ..     289     309 ..     285     316 .. 0.88

  Alignments for each domain:
  == domain 1  score: 18.5 bits;  conditional E-value: 1e-06
   EF-hand_6   4 eaFklfDkdgdGkidaeElrkalrk 28 
                 eaF ++D +gdGki++ E+r + rk
  KOO24131.1  93 EAFLAWDASGDGKISKMEFREFVRK 117
                 89********************994 PP

  == domain 2  score: 16.4 bits;  conditional E-value: 4.8e-06
   EF-hand_6   2 lreaFklfDkdgdGkidaeElrkalr 27 
                 ++e+F++ D d +G+i+aeEl+ al 
  KOO24131.1 129 IDELFDKVDLDSSGSINAEELQPALA 154
                 789******************98885 PP

  == domain 3  score: 27.4 bits;  conditional E-value: 1.5e-09
   EF-hand_6   5 aFklfDkdgdGkidaeElrkalrka 29 
                 +Fk+fDkdg+G+++ +Elr+al+  
  KOO24131.1 251 VFKHFDKDGSGTLSVKELRNALK-F 274
                 8*********************9.5 PP

  == domain 4  score: 12.5 bits;  conditional E-value: 8.7e-05
   EF-hand_6   7 klfDkdgdGkidaeElrkalr 27 
                  ++D + dGk+d++E+ k+++
  KOO24131.1 289 GAYDSTPDGKVDQAEFAKLIK 309
                 68****************998 PP

>> EF-hand_1  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.1   0.1   2.4e-07   0.00031       3      29 .]      92     118 ..      91     118 .. 0.95
   2 !   19.9   0.0   2.8e-07   0.00036       1      26 [.     128     153 ..     128     155 .. 0.90
   3 !   25.3   0.0   5.3e-09   6.8e-06       5      27 ..     251     273 ..     247     274 .. 0.92
   4 ?    5.5   0.0     0.011        14      14      28 ..     296     310 ..     285     311 .. 0.87

  Alignments for each domain:
  == domain 1  score: 20.1 bits;  conditional E-value: 2.4e-07
                 HHHHHHHTTTSSSEEEHHHHHHHHHHH CS
   EF-hand_1   3 keiFrefDkDgdGkIdfeEfkellkkl 29 
                 +e+F   D  gdGkI++ Ef+e+++kl
  KOO24131.1  92 DEAFLAWDASGDGKISKMEFREFVRKL 118
                 799*********************986 PP

  == domain 2  score: 19.9 bits;  conditional E-value: 2.8e-07
                 HHHHHHHHHTTTSSSEEEHHHHHHHH CS
   EF-hand_1   1 elkeiFrefDkDgdGkIdfeEfkell 26 
                 +++e+F+++D D +G I+ eE++ +l
  KOO24131.1 128 KIDELFDKVDLDSSGSINAEELQPAL 153
                 589*******************8666 PP

  == domain 3  score: 25.3 bits;  conditional E-value: 5.3e-09
                 HHHHHTTTSSSEEEHHHHHHHHH CS
   EF-hand_1   5 iFrefDkDgdGkIdfeEfkellk 27 
                 +F++fDkDg+G+++ +E++++lk
  KOO24131.1 251 VFKHFDKDGSGTLSVKELRNALK 273
                 8*******************997 PP

  == domain 4  score: 5.5 bits;  conditional E-value: 0.011
                 SSEEEHHHHHHHHHH CS
   EF-hand_1  14 dGkIdfeEfkellkk 28 
                 dGk+d  Ef +l+k+
  KOO24131.1 296 DGKVDQAEFAKLIKE 310
                 9*********99986 PP

>> EF-hand_7  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.2   0.1   3.5e-05     0.045      19      71 .]      59     116 ..      33     116 .. 0.78
   2 !   30.4   0.2     3e-10   3.8e-07       6      67 ..      93     150 ..      89     154 .. 0.85
   3 !   34.1   0.0   2.1e-11   2.7e-08       2      70 ..     246     308 ..     245     309 .. 0.94

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 3.5e-05
   EF-hand_7  19 ldkeellrllrkifqga.....gegsklsdeelellfkefDtdkdGvisfdEFlklyr 71 
                 ld+ e+ +l  ki  +      +++s++  e+ ++ f  +D ++dG+is  EF++++r
  KOO24131.1  59 LDVKEIDDLEAKIGGALvalgfSRTSSSKLESRDEAFLAWDASGDGKISKMEFREFVR 116
                 44445554444444444777778888877799***********************986 PP

  == domain 2  score: 30.4 bits;  conditional E-value: 3e-10
   EF-hand_7   6 eaFkelDtdgdgyldkeellrllrkifqgagegsklsdeelellfkefDtdkdGvisfdEFl 67 
                 eaF + D  gdg+++k e+++++rk+    g +++ s +++++lf+++D+d++G+i+ +E++
  KOO24131.1  93 EAFLAWDASGDGKISKMEFREFVRKLP---GCENH-STHKIDELFDKVDLDSSGSINAEELQ 150
                 578889******************965...44444.3467********************97 PP

  == domain 3  score: 34.1 bits;  conditional E-value: 2.1e-11
   EF-hand_7   2 eklkeaFkelDtdgdgyldkeellrllrkifqgagegsklsdeelellfkefDtdkdGvisfdEFlkly 70 
                 ek++ +Fk +D+dg+g l++ el+++l+        g++ +  + e+++   D++ dG+++  EF kl+
  KOO24131.1 246 EKTRIVFKHFDKDGSGTLSVKELRNALK------FYGFSATTRQTEKVLGAYDSTPDGKVDQAEFAKLI 308
                 88999***********************......889998999999*******************9986 PP

>> EF-hand_5  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.6   0.1   3.6e-07   0.00046       4      25 .]      94     115 ..      91     115 .. 0.87
   2 !   18.8   0.5   6.4e-07   0.00082       1      22 [.     129     150 ..     129     150 .. 0.93
   3 !   18.4   0.0   8.1e-07     0.001       4      23 ..     251     270 ..     249     273 .. 0.89
   4 ?    5.0   0.0     0.014        18       9      24 ..     292     307 ..     285     308 .. 0.78

  Alignments for each domain:
  == domain 1  score: 19.6 bits;  conditional E-value: 3.6e-07
                 HHHHH-SS-SSCE-HHHHHHHH CS
   EF-hand_5   4 tFqaiDlNgDGkIskeELktlv 25 
                 +F a D+ gDGkIsk E++++v
  KOO24131.1  94 AFLAWDASGDGKISKMEFREFV 115
                 68888***************96 PP

  == domain 2  score: 18.8 bits;  conditional E-value: 6.4e-07
                 HHHHHHHH-SS-SSCE-HHHHH CS
   EF-hand_5   1 lkdtFqaiDlNgDGkIskeELk 22 
                 ++++F+++Dl+ +G I++eEL+
  KOO24131.1 129 IDELFDKVDLDSSGSINAEELQ 150
                 5779*****************7 PP

  == domain 3  score: 18.4 bits;  conditional E-value: 8.1e-07
                 HHHHH-SS-SSCE-HHHHHH CS
   EF-hand_5   4 tFqaiDlNgDGkIskeELkt 23 
                 +F+ +D++g+G++s+ EL++
  KOO24131.1 251 VFKHFDKDGSGTLSVKELRN 270
                 7999**************97 PP

  == domain 4  score: 5.0 bits;  conditional E-value: 0.014
                 -SS-SSCE-HHHHHHH CS
   EF-hand_5   9 DlNgDGkIskeELktl 24 
                 D   DGk++  E+ +l
  KOO24131.1 292 DSTPDGKVDQAEFAKL 307
                 5556*********987 PP

>> EF-hand_8  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.2   0.0   9.7e-05      0.12      35      54 ..      98     117 ..      86     118 .. 0.86
   2 !   22.8   0.9   4.6e-08   5.9e-05       2      47 ..     103     148 ..     102     154 .. 0.92
   3 !   16.6   0.1   4.2e-06    0.0054      25      52 ..     245     272 ..     228     273 .. 0.87
   4 ?    3.6   0.0     0.047        61      40      51 ..     296     307 ..     291     323 .. 0.75

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 9.7e-05
   EF-hand_8  35 fDtdgdGkisfeEFcvller 54 
                  D  gdGkis++EF +++ +
  KOO24131.1  98 WDASGDGKISKMEFREFVRK 117
                 6999**********999875 PP

  == domain 2  score: 22.8 bits;  conditional E-value: 4.6e-08
   EF-hand_8   2 kgkItreelrrilril.glkkglseeevdilfrefDtdgdGkisfeE 47 
                 +gkI++ e+r+++r+l g +   s +++d+lf+++D+d +G i+ eE
  KOO24131.1 103 DGKISKMEFREFVRKLpGCEN-HSTHKIDELFDKVDLDSSGSINAEE 148
                 8************99988775.9*********************998 PP

  == domain 3  score: 16.6 bits;  conditional E-value: 4.2e-06
   EF-hand_8  25 eeevdilfrefDtdgdGkisfeEFcvll 52 
                 +e+ +i+f++fD dg+G++s +E  + l
  KOO24131.1 245 DEKTRIVFKHFDKDGSGTLSVKELRNAL 272
                 5679*******************88765 PP

  == domain 4  score: 3.6 bits;  conditional E-value: 0.047
   EF-hand_8  40 dGkisfeEFcvl 51 
                 dGk+++ EF  l
  KOO24131.1 296 DGKVDQAEFAKL 307
                 777888777765 PP

>> Dockerin_1  Dockerin type I domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.7   0.0     0.013        17      29      50 ..      90     111 ..      53     118 .. 0.84
   2 ?   -1.2   0.0         2   2.5e+03      36      47 ..     135     146 ..     124     150 .. 0.75
   3 !    8.7   0.0    0.0015       1.9      20      57 ..     270     311 ..     263     312 .. 0.82

  Alignments for each domain:
  == domain 1  score: 5.7 bits;  conditional E-value: 0.013
                 TSCCCHGGGSTT-SSCESHHHH CS
  Dockerin_1  29 ssssngkaaDvNgDGrvnalDa 50 
                 s+++   a D +gDG+++++ +
  KOO24131.1  90 SRDEAFLAWDASGDGKISKMEF 111
                 666777899*********9876 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 2
                 GGSTT-SSCESH CS
  Dockerin_1  36 aaDvNgDGrvna 47 
                 + D++  G++na
  KOO24131.1 135 KVDLDSSGSINA 146
                 567777777776 PP

  == domain 3  score: 8.7 bits;  conditional E-value: 0.0015
                 HHCT....SSEBTTSCCCHGGGSTT-SSCESHHHHHHHHHHH CS
  Dockerin_1  20 nyln....qregqssssngkaaDvNgDGrvnalDallvinyL 57 
                 n+l     +++++++++   a+D + DG+v+   ++ +i+++
  KOO24131.1 270 NALKfygfSATTRQTEKVLGAYDSTPDGKVDQAEFAKLIKEV 311
                 55556666667788889999*******************986 PP

>> Rgp1  Rgp1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.1   0.1     0.002       2.6     171     273 ..      38     180 ..      33     247 .. 0.61
   2 ?    6.0   0.4    0.0046       5.8     205     267 ..     304     369 ..     278     407 .. 0.67

  Alignments for each domain:
  == domain 1  score: 7.1 bits;  conditional E-value: 0.002
        Rgp1 171 qlghdLmspy.....illrdearvkevk...............srkkssssskekkkskskkkseksesskedFlkyveelleneseskdi........ 241
                 +++h+Lm+p+     + +++e  vke++               sr++ss+ +++++   + ++s + + sk +F ++v++l   e++s++         
  KOO24131.1  38 KVFHELMKPIeamelVRMQKELDVKEIDdleakiggalvalgfSRTSSSKLESRDEAFLAWDASGDGKISKMEFREFVRKLPGCENHSTHKidelfdkv 136
                 6789999997444446888889999999**************966666665555666666666777777899*******99887777665545555555 PP

        Rgp1 242 .........eellspqlevqfeeeedseenee....................srrksvvsk 273
                          +e l+                 +                    +++k++++k
  KOO24131.1 137 dldssgsinAEELQ-----------------PalaawrhawrkhnkenetkvDEKKEAEKK 180
                 55555555533333.................233333333322211111233222222222 PP

  == domain 2  score: 6.0 bits;  conditional E-value: 0.0046
        Rgp1 205 kkkskskkkseksesskedFlkyveelleneseskdieellspqlevqfeeeedseenee....srr 267
                  +k  ++ ++++ +   ++F+ ++ +l++ e+ +++ +el++ q+++  ++ee ++ +++    +  
  KOO24131.1 304 FAKLIKEVSKQTLTYEASEFIGLLAQLVDPEAWTAELTELVNLQAKKGQHTEEMQKRKKNlslkD-T 369
                 444555566666777899***************************99888777777666654431.2 PP

>> DUF3859  Domain of unknown function (DUF3859)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0     8e-05       0.1      16     106 ..     355     441 ..     347     446 .. 0.78

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 8e-05
                 --------------S-EEE.......-SEEE--TT-EEEEEE-EES--TTS-.EEEEEEEEEEE-TTS-EEEEEEEEE---TT-S-EEEEEE-- CS
     DUF3859  16 edwdekskdLprsnikiitkllef..ttkvpAelgieFGvivnikkakgede.ltltithPglpdddGetsekfegevyleendwdfvlgftfw 106
                 e++++ +k+L+ +++k+  ++l+f  t  v+A + + F+ ++++++ak + + l+ ++  + +  + G  ++         +n w+++++f+++
  KOO24131.1 355 EEMQKRKKNLSLKDTKPS-AFLHFlkTYIVEADVNLDFAQETRVQSAKRSSDfLDAELQSIRM--QPGPVRKMLFAL----TNRWHDYMAFQLD 441
                 567777788884455554.5888889************************999******9988..444444433333....389*******986 PP

>> p25-alpha  p25-alpha
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.2   9.6e-05      0.12      37     104 ..     122     187 ..      92     195 .. 0.69
   2 ?    3.2   2.0      0.07        90      42     146 ..     246     363 ..     216     370 .. 0.77

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 9.6e-05
   p25-alpha  37 kkvtstdvDiiFsKvkaksarkitfeqfkealeelaekkfkkkkkeeeleliekliegkgPklqgvtk 104
                 ++  ++++D +F Kv   s+ +i+ e+ + al      + k++k++e++ + +k +e+  ++++++ +
  KOO24131.1 122 ENHSTHKIDELFDKVDLDSSGSINAEELQPALAAWRHAWRKHNKENETKVDEKKEAEK--KETTAAAA 187
                 4678999***************************999977777766666344444444..44444333 PP

  == domain 2  score: 3.2 bits;  conditional E-value: 0.07
   p25-alpha  42 tdvDiiFsKvkaksarkitfeqfkealeelaekkfkkkkkeeel..............eliekliegkgPklqgvtkatkagavdrltDtskYTGshke 126
                 +++ i+F+ + + ++ ++++++  +al+    +  +++++ e++               +  kli++ ++++    + +  g + +l D + +T    e
  KOO24131.1 246 EKTRIVFKHFDKDGSGTLSVKELRNALKFYGFS--ATTRQTEKVlgaydstpdgkvdqAEFAKLIKEVSKQTLTYEASEFIGLLAQLVDPEAWTAELTE 342
                 566788888888888888888888888888777..3444444445678888888888777888888888888887777788888999999999999999 PP

   p25-alpha 127 rfD.esgkgkglagredredn 146
                  ++ +  kg++ ++ + r++n
  KOO24131.1 343 LVNlQAKKGQHTEEMQKRKKN 363
                 888888888888888877665 PP

>> DUF5525  Family of unknown function (DUF5525)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   4.6   0.00014      0.18     705     739 ..     184     218 ..     177     233 .. 0.72

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.00014
     DUF5525 705 aspapasapapspapapapvagpapastaatvdsa 739
                 a+ a+a+ap+p+papapap+++ apa   ++++ +
  KOO24131.1 184 AAAATANAPSPAPAPAPAPASALAPAEGGSNMNDS 218
                 66788999999999999999999998776554433 PP

>> LEM  LEM domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.9   0.0    0.0018       2.3       5      21 ..     263     279 ..     261     287 .. 0.87
   2 ?    0.8   0.0      0.28   3.6e+02      10      24 ..     407     421 ..     401     423 .. 0.85

  Alignments for each domain:
  == domain 1  score: 7.9 bits;  conditional E-value: 0.0018
         LEM   5 LsDeeLreeLkkyGvsp 21 
                 Ls +eLr+ Lk yG+s+
  KOO24131.1 263 LSVKELRNALKFYGFSA 279
                 7779***********86 PP

  == domain 2  score: 0.8 bits;  conditional E-value: 0.28
         LEM  10 LreeLkkyGvspGPI 24 
                 L +eL++  ++pGP+
  KOO24131.1 407 LDAELQSIRMQPGPV 421
                 77999999******8 PP

>> EF-hand_10  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.2   0.0     0.031        39      30      50 .]      98     118 ..      92     118 .. 0.88
   2 ?   -0.3   0.1       0.8     1e+03      25      43 ..     131     149 ..     129     151 .. 0.90
   3 ?    3.9   0.1     0.038        48      21      44 ..     246     269 ..     226     275 .. 0.84

  Alignments for each domain:
  == domain 1  score: 4.2 bits;  conditional E-value: 0.031
  EF-hand_10  30 cDkSksgrLegeEieeFyklL 50 
                  D S +g++   E+ eF ++L
  KOO24131.1  98 WDASGDGKISKMEFREFVRKL 118
                 699**************9987 PP

  == domain 2  score: -0.3 bits;  conditional E-value: 0.8
  EF-hand_10  25 kLFkkcDkSksgrLegeEi 43 
                 +LF k D   sg+++ eE+
  KOO24131.1 131 ELFDKVDLDSSGSINAEEL 149
                 79************99997 PP

  == domain 3  score: 3.9 bits;  conditional E-value: 0.038
  EF-hand_10  21 eYAekLFkkcDkSksgrLegeEie 44 
                 e  + +Fk+ Dk  sg+L  +E+ 
  KOO24131.1 246 EKTRIVFKHFDKDGSGTLSVKELR 269
                 556789************999986 PP

>> DUF1840  Domain of unknown function (DUF1840)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   1.8   8.5e-05      0.11      31      76 ..     138     183 ..     123     193 .. 0.76
   2 ?    0.0   0.3      0.83   1.1e+03      44      56 ..     335     347 ..     245     387 .. 0.67

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 8.5e-05
     DUF1840  31 lterGaitaedlpaaiakLeaaiaaekaeeaeeeeeeeeeekeeek 76 
                 l+ +G i+ae+l+ a+a+ ++a  ++++e++++ +e++e+ek+e++
  KOO24131.1 138 LDSSGSINAEELQPALAAWRHAWRKHNKENETKVDEKKEAEKKETT 183
                 6789********************9999988877666655543333 PP

  == domain 2  score: 0.0 bits;  conditional E-value: 0.83
     DUF1840  44 aaiakLeaaiaae 56 
                 a+ a+L++ ++ +
  KOO24131.1 335 AWTAELTELVNLQ 347
                 3334444444333 PP

>> PG_binding_2  Putative peptidoglycan binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.0       9.2   1.2e+04       6      25 ..      24      43 ..      22      44 .. 0.71
   2 ?    9.2   0.1    0.0011       1.5       8      50 ..      58      98 ..      52     101 .. 0.77
   3 ?   -1.7   0.1         3   3.8e+03      41      52 ..     147     158 ..     141     183 .. 0.64
   4 ?   -0.3   0.0       1.1   1.4e+03      20      41 ..     267     285 ..     264     306 .. 0.58

  Alignments for each domain:
  == domain 1  score: -3.3 bits;  conditional E-value: 9.2
  PG_binding_2  6 kpeeervlaedvaeevqaaL 25
                  + ++++vl+++v ++v   L
    KOO24131.1 24 QAKSKVVLKGTVDSKVFHEL 43
                  55778888998888886655 PP

  == domain 2  score: 9.2 bits;  conditional E-value: 0.0011
  PG_binding_2  8 eeervlaedvaeevqaaLsrLGyydgeaggafrealrdALraf 50
                  e ++   +d + ++  aL++LG+  +    +  e+  +A+ a+
    KOO24131.1 58 ELDVKEIDDLEAKIGGALVALGF-SRTSS-SKLESRDEAFLAW 98
                  56778899***************.44443.5567788899888 PP

  == domain 3  score: -1.7 bits;  conditional E-value: 3
  PG_binding_2  41 ealrdALrafia 52 
                   e+l+ AL+a+ +
    KOO24131.1 147 EELQPALAAWRH 158
                   566677777765 PP

  == domain 4  score: -0.3 bits;  conditional E-value: 1.1
  PG_binding_2  20 evqaaLsrLGyydgeaggafre 41 
                   e+++aL+  G+   +a+ + +e
    KOO24131.1 267 ELRNALKFYGF---SATTRQTE 285
                   66677777777...33333332 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (451 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1293  (0.0721178); expected 358.6 (0.02)
Passed bias filter:                      537  (0.0299515); expected 358.6 (0.02)
Passed Vit filter:                        56  (0.00312343); expected 17.9 (0.001)
Passed Fwd filter:                        15  (0.000836633); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              14  [number of targets reported over threshold]
# CPU time: 0.61u 0.28s 00:00:00.89 Elapsed: 00:00:00.44
# Mc/sec: 3058.12
//
Query:       KOO24132.1  [L=172]
Description: hypothetical protein Ctob_003953 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    7.6e-07   28.8   0.9    7.6e-07   28.8   0.9    2.0  2  PQ-loop   PQ loop repeat
  ------ inclusion threshold ------
      0.067   12.8   5.4      0.075   12.7   5.4    1.1  1  MASE3     Membrane-associated sensor domain


Domain annotation for each model (and alignments):
>> PQ-loop  PQ loop repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.8   0.9   8.5e-11   7.6e-07       1      46 [.      51      96 ..      51     106 .. 0.94
   2 ?   -2.4   0.1      0.46   4.1e+03      39      50 ..     119     130 ..     115     133 .. 0.67

  Alignments for each domain:
  == domain 1  score: 28.8 bits;  conditional E-value: 8.5e-11
     PQ-loop  1 lseilgyislvlwlvsyiPQiikNykrkSteGlSilflllwllGdi 46
                ls+++  +s+v+ +v++ PQ++++++++ ++ lS l++l++ +G  
  KOO24132.1 51 LSQTFAVLSAVVVVVAFAPQLYETWRTRGAGSLSSLYYLIQSIGTA 96
                68999************************************99975 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 0.46
     PQ-loop  39 llwllGdilsll 50 
                  +++ G+i+s+l
  KOO24132.1 119 SMAMQGGIFSML 130
                 566667777775 PP

>> MASE3  Membrane-associated sensor domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   5.4   8.3e-06     0.075      90     184 ..       3      98 ..       1     133 [. 0.79

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 8.3e-06
       MASE3  90 lllavlllkrkv.lrayavflvyalvtlllllsifypkifPalfiegsGlTp.fkiisEyliilllllalllllrrrkkfekkvlrlllaalvllil 184
                 l+l+vl++ ++v  ++ +v++++ ++tl++++  +y++ +  +    + l++ f ++s +++++ ++  l+  +r+r   + ++l +l+ ++ ++ +
  KOO24132.1   3 LVLVVLFPPHNVaKERALVVVTLSCLTLTIFA-ACYLSALSPCSEASHTLSQtFAVLSAVVVVVAFAPQLYETWRTRGAGSLSSLYYLIQSIGTALV 98 
                 56667777777744445555555666665555.66689999999999999876899*******************************9999877655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (172 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       709  (0.0395449); expected 358.6 (0.02)
Passed bias filter:                      340  (0.0189637); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.40u 0.25s 00:00:00.65 Elapsed: 00:00:00.40
# Mc/sec: 1280.89
//
Query:       KOO24133.1  [L=419]
Description: hypothetical protein Ctob_003952 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    9.3e-12   43.9   0.2     0.0016   18.2   0.0    3.4  3  EF-hand_6   EF-hand domain
    7.4e-10   37.7   0.0      0.035   13.6   0.0    3.4  3  EF-hand_1   EF hand
    1.2e-09   38.5   0.0    1.3e-07   32.0   0.0    2.4  2  EF-hand_7   EF-hand domain pair
    1.1e-08   34.2   1.4      0.014   14.8   0.2    3.5  3  EF-hand_5   EF hand
    0.00012   21.8   0.1        1.4    8.8   0.0    3.3  3  EF-hand_8   EF-hand domain pair
  ------ inclusion threshold ------
      0.051   13.4   0.0        3.8    7.5   0.0    2.5  3  EF-hand_10  EF hand


Domain annotation for each model (and alignments):
>> EF-hand_6  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.2   0.0   5.4e-07    0.0016       1      30 [.     266     294 ..     266     296 .. 0.90
   2 !   14.2   0.0     1e-05     0.031       4      27 ..     305     328 ..     302     332 .. 0.93
   3 !    7.6   0.1    0.0014       4.1       4      17 ..     404     417 ..     403     417 .. 0.91

  Alignments for each domain:
  == domain 1  score: 18.2 bits;  conditional E-value: 5.4e-07
   EF-hand_6   1 elreaFklfDkdgdGkidaeElrkalrkal 30 
                 ++ ++F+++D +gdG i   El++a+   l
  KOO24133.1 266 RMIDLFREWDESGDGRIQCRELQRAIA-HL 294
                 5889********************998.45 PP

  == domain 2  score: 14.2 bits;  conditional E-value: 1e-05
   EF-hand_6   4 eaFklfDkdgdGkidaeElrkalr 27 
                 ++F+ +D+d +G+i   El  +lr
  KOO24133.1 305 ALFRSWDVDSSGQIELRELETILR 328
                 68********************99 PP

  == domain 3  score: 7.6 bits;  conditional E-value: 0.0014
   EF-hand_6   4 eaFklfDkdgdGki 17 
                 ++F ++D++gdG +
  KOO24133.1 404 DLFSAIDRNGDGRL 417
                 69**********86 PP

>> EF-hand_1  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.3   0.0   1.5e-05     0.045       4      28 ..     269     293 ..     266     294 .. 0.91
   2 !   13.6   0.0   1.2e-05     0.035       4      27 ..     305     328 ..     302     330 .. 0.90
   3 !    7.0   0.1    0.0016       4.8       4      17 ..     404     417 ..     403     417 .. 0.89

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 1.5e-05
                 HHHHHHTTTSSSEEEHHHHHHHHHH CS
   EF-hand_1   4 eiFrefDkDgdGkIdfeEfkellkk 28 
                 ++Fre D  gdG+I   E+++++++
  KOO24133.1 269 DLFREWDESGDGRIQCRELQRAIAH 293
                 79*******************9987 PP

  == domain 2  score: 13.6 bits;  conditional E-value: 1.2e-05
                 HHHHHHTTTSSSEEEHHHHHHHHH CS
   EF-hand_1   4 eiFrefDkDgdGkIdfeEfkellk 27 
                  +Fr  D+D +G+I++ E+ ++l+
  KOO24133.1 305 ALFRSWDVDSSGQIELRELETILR 328
                 68*****************99997 PP

  == domain 3  score: 7.0 bits;  conditional E-value: 0.0016
                 HHHHHHTTTSSSEE CS
   EF-hand_1   4 eiFrefDkDgdGkI 17 
                 ++F+ +D++gdG++
  KOO24133.1 404 DLFSAIDRNGDGRL 417
                 589*********85 PP

>> EF-hand_7  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.0   0.0   4.3e-11   1.3e-07       3      70 ..     266     327 ..     264     328 .. 0.91
   2 ?    4.1   0.0     0.021        62       7      19 ..     405     417 ..     390     417 .. 0.75

  Alignments for each domain:
  == domain 1  score: 32.0 bits;  conditional E-value: 4.3e-11
   EF-hand_7   3 klkeaFkelDtdgdgyldkeellrllrkifqgagegsklsdeelellfkefDtdkdGvisfdEFlkly 70 
                 ++ + F+e D  gdg++  +el+r++       + g ++ + ++ +lf+ +D d++G+i + E++++ 
  KOO24133.1 266 RMIDLFREWDESGDGRIQCRELQRAIA------HLGLEMEPRHVAALFRSWDVDSSGQIELRELETIL 327
                 67789**********************......7888888889********************99876 PP

  == domain 2  score: 4.1 bits;  conditional E-value: 0.021
   EF-hand_7   7 aFkelDtdgdgyl 19 
                  F ++D++gdg+l
  KOO24133.1 405 LFSAIDRNGDGRL 417
                 5666666666665 PP

>> EF-hand_5  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.8   0.0    0.0016       4.9       2      23 ..     268     289 ..     267     291 .. 0.88
   2 !    9.7   0.0   0.00021      0.62       3      24 ..     305     326 ..     303     327 .. 0.88
   3 !   14.8   0.2   4.8e-06     0.014       3      16 ..     404     417 ..     403     417 .. 0.91

  Alignments for each domain:
  == domain 1  score: 6.8 bits;  conditional E-value: 0.0016
                 HHHHHHH-SS-SSCE-HHHHHH CS
   EF-hand_5   2 kdtFqaiDlNgDGkIskeELkt 23 
                  d+F++ D  gDG+I   EL++
  KOO24133.1 268 IDLFREWDESGDGRIQCRELQR 289
                 689************9999886 PP

  == domain 2  score: 9.7 bits;  conditional E-value: 0.00021
                 HHHHHH-SS-SSCE-HHHHHHH CS
   EF-hand_5   3 dtFqaiDlNgDGkIskeELktl 24 
                 ++F+  D++ +G+I   EL+t+
  KOO24133.1 305 ALFRSWDVDSSGQIELRELETI 326
                 589999*************996 PP

  == domain 3  score: 14.8 bits;  conditional E-value: 4.8e-06
                 HHHHHH-SS-SSCE CS
   EF-hand_5   3 dtFqaiDlNgDGkI 16 
                 d+F+aiD NgDG++
  KOO24133.1 404 DLFSAIDRNGDGRL 417
                 79**********96 PP

>> EF-hand_8  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.5   0.0      0.01        31      30      47 ..     269     286 ..     268     287 .. 0.89
   2 !    8.8   0.0   0.00046       1.4       8      47 ..     285     322 ..     279     323 .. 0.89
   3 !    6.2   0.1     0.003         9      30      43 ..     404     417 ..     403     417 .. 0.91

  Alignments for each domain:
  == domain 1  score: 4.5 bits;  conditional E-value: 0.01
   EF-hand_8  30 ilfrefDtdgdGkisfeE 47 
                 +lfre D+ gdG+i + E
  KOO24133.1 269 DLFREWDESGDGRIQCRE 286
                 59************8866 PP

  == domain 2  score: 8.8 bits;  conditional E-value: 0.00046
   EF-hand_8   8 eelrrilrilglkkglseeevdilfrefDtdgdGkisfeE 47 
                  el+r+++ lgl+  + +  v +lfr  D d +G i + E
  KOO24133.1 285 RELQRAIAHLGLE--MEPRHVAALFRSWDVDSSGQIELRE 322
                 59***********..********************98765 PP

  == domain 3  score: 6.2 bits;  conditional E-value: 0.003
   EF-hand_8  30 ilfrefDtdgdGki 43 
                 +lf+++D++gdG++
  KOO24133.1 404 DLFSAIDRNGDGRL 417
                 69**********86 PP

>> EF-hand_10  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.6   0.0     0.005        15      25      43 ..     269     287 ..     258     289 .. 0.81
   2 ?    7.5   0.0    0.0013       3.8       4      46 ..     284     326 ..     281     329 .. 0.91
   3 ?   -2.9   0.0       2.2   6.6e+03      25      38 ..     404     417 ..     403     417 .. 0.89

  Alignments for each domain:
  == domain 1  score: 5.6 bits;  conditional E-value: 0.005
  EF-hand_10  25 kLFkkcDkSksgrLegeEi 43 
                  LF++ D+S +gr++  E+
  KOO24133.1 269 DLFREWDESGDGRIQCREL 287
                 48***********998886 PP

  == domain 2  score: 7.5 bits;  conditional E-value: 0.0013
  EF-hand_10   4 fkEvkrlLreiNievddeYAekLFkkcDkSksgrLegeEieeF 46 
                   E++r +  + +e++      LF+  D   sg++e  E+e+ 
  KOO24133.1 284 CRELQRAIAHLGLEMEPRHVAALFRSWDVDSSGQIELRELETI 326
                 679999999******************************9986 PP

  == domain 3  score: -2.9 bits;  conditional E-value: 2.2
  EF-hand_10  25 kLFkkcDkSksgrL 38 
                  LF   D+  +grL
  KOO24133.1 404 DLFSAIDRNGDGRL 417
                 599999***99998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (419 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1333  (0.0743488); expected 358.6 (0.02)
Passed bias filter:                      473  (0.0263818); expected 358.6 (0.02)
Passed Vit filter:                        64  (0.00356964); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.55u 0.24s 00:00:00.79 Elapsed: 00:00:00.41
# Mc/sec: 3101.60
//
Query:       KOO24134.1  [L=532]
Description: u3 small nucleolar RNA-interacting protein 2 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    6.3e-31  105.9  14.4    2.5e-05   24.9   0.4    7.3  7  WD40         WD domain, G-beta repeat
    1.6e-05   25.1   0.0       0.58   10.5   0.0    4.6  4  ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain
  ------ inclusion threshold ------
      0.011   14.4   0.3        0.9    8.1   0.0    2.9  3  Nup160       Nucleoporin Nup120/160
        0.1   12.7   0.0       0.45   10.6   0.0    2.1  2  BBS2_Mid     Ciliary BBSome complex subunit 2, middle region
       0.22   10.8   0.0        4.9    6.4   0.0    2.2  2  WD40_like    WD40-like domain


Domain annotation for each model (and alignments):
>> WD40  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.8   0.0   9.9e-05      0.35       6      38 .]     150     183 ..     146     183 .. 0.82
   2 !   24.9   0.4   7.1e-09   2.5e-05       8      38 .]     225     256 ..     220     256 .. 0.95
   3 !   22.7   0.0   3.7e-08   0.00013       3      38 .]     262     300 ..     260     300 .. 0.92
   4 !   19.1   0.0   4.8e-07    0.0017       5      38 .]     308     341 ..     304     341 .. 0.82
   5 !   13.7   0.1   2.5e-05     0.089       4      38 .]     347     382 ..     344     382 .. 0.82
   6 !   13.6   0.3   2.6e-05     0.094      12      37 ..     406     431 ..     392     432 .. 0.84
   7 ?    3.8   0.0     0.033   1.2e+02       7      28 ..     448     467 ..     441     474 .. 0.80

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 9.9e-05
                 EEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40   6 tltGH.ssvtslafspdgawlasGsdDgtvriWd 38 
                 +++G   s ts+a+ pd +++++G++Dg +  Wd
  KOO24134.1 150 VFRGPrLSATSVAVAPDESFVVCGCKDGALVRWD 183
                 5666643459******************999887 PP

  == domain 2  score: 24.9 bits;  conditional E-value: 7.1e-09
                 ESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40   8 tGH.ssvtslafspdgawlasGsdDgtvriWd 38 
                 tGH s+v s+ +s d++++asG++Dg + +Wd
  KOO24134.1 225 TGHlSDVLSVVVSADSRLIASGGRDGAILLWD 256
                 6******************************9 PP

  == domain 3  score: 22.7 bits;  conditional E-value: 3.7e-08
                 EEEEEESS.SSEEEEE..EETTSSEEEEEETTSEEEEEE CS
        WD40   3 clrtltGH.ssvtsla..fspdgawlasGsdDgtvriWd 38 
                  ++  +GH  +v++l+   + dg+ l sG+dD+tvr+Wd
  KOO24134.1 262 VVHQMRGHkMPVSALSrrRDADGPELYSGCDDRTVRVWD 300
                 578899**888***************************9 PP

  == domain 4  score: 19.1 bits;  conditional E-value: 4.8e-07
                 EEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40   5 rtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 
                  tl GH  ++++l+   ++++l sGs D+tvr+W+
  KOO24134.1 308 ETLYGHqEPICALDALCEHHLL-SGSADRTVRLWK 341
                 5889**888****766666665.8**********6 PP

  == domain 5  score: 13.7 bits;  conditional E-value: 2.5e-05
                 EEEEE.SS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40   4 lrtlt.GH.ssvtslafspdgawlasGsdDgtvriWd 38 
                 + ++t GH  +v ++a  +  a++ sGs Dg++ +W+
  KOO24134.1 347 QLVFThGHtAPVDCVAMLHADAFV-SGSQDGSLTFWS 382
                 5556559*888****999999996.8**********5 PP

  == domain 6  score: 13.6 bits;  conditional E-value: 2.6e-05
                 SEEEEEEETTSSEEEEEETTSEEEEE CS
        WD40  12 svtslafspdgawlasGsdDgtvriW 37 
                 + t+la + +++ ++sGs Dg++r+W
  KOO24134.1 406 WLTALAAPAYSDVVVSGSCDGHLRFW 431
                 47999999999******99******* PP

  == domain 7  score: 3.8 bits;  conditional E-value: 0.033
                 EESSSSEEEEEEETTSSEEEEE CS
        WD40   7 ltGHssvtslafspdgawlasG 28 
                 ltG   v++la  p+g+++a++
  KOO24134.1 448 LTGF--VNGLALAPSGKFVAAA 467
                 5565..************9875 PP

>> ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.6   0.0     0.023        82      37      70 ..     154     187 ..     138     194 .. 0.85
   2 !   10.5   0.0   0.00016      0.58      39      85 ..     229     274 ..     217     280 .. 0.85
   3 ?    4.7   0.0     0.011        38      48      85 ..     282     318 ..     268     365 .. 0.86
   4 ?   -1.5   0.0      0.89   3.2e+03      40      58 ..     451     469 ..     444     473 .. 0.85

  Alignments for each domain:
  == domain 1  score: 3.6 bits;  conditional E-value: 0.023
  ANAPC4_WD40  37 edsevrsLaWkpdgklLavaysdgevrlldaesg 70 
                  +  + +s+a  pd+++ + +++dg++   d +sg
   KOO24134.1 154 PRLSATSVAVAPDESFVVCGCKDGALVRWDLQSG 187
                  5667899999**************9998888877 PP

  == domain 2  score: 10.5 bits;  conditional E-value: 0.00016
  ANAPC4_WD40  39 sevrsLaWkpdgklLavaysdgevrlldaesgkvvhslsvksekavt 85 
                  s v s+  + d +l+a +  dg++ l d  + +vvh+++ ++   v+
   KOO24134.1 229 SDVLSVVVSADSRLIASGGRDGAILLWDCRTSRVVHQMRGHKMP-VS 274
                  67788888999**************************9988763.55 PP

  == domain 3  score: 4.7 bits;  conditional E-value: 0.011
  ANAPC4_WD40  48 pdgklLavaysdgevrlldaesgkvvhslsvksekavt 85 
                   dg  L  +++d +vr+ d+e+   v++l  ++e  ++
   KOO24134.1 282 ADGPELYSGCDDRTVRVWDVEQRGYVETLYGHQEP-IC 318
                  47888999*************99999998777663.55 PP

  == domain 4  score: -1.5 bits;  conditional E-value: 0.89
  ANAPC4_WD40  40 evrsLaWkpdgklLavays 58 
                   v++La  p+gk+ a a+ 
   KOO24134.1 451 FVNGLALAPSGKFVAAAVG 469
                  5899**********99876 PP

>> Nup160  Nucleoporin Nup120/160
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.1   0.0   0.00025       0.9     142     255 ..     147     265 ..     138     274 .. 0.80
   2 ?    2.3   0.1     0.015        52     234     252 ..     288     306 ..     274     313 .. 0.84
   3 ?   -1.0   0.0      0.14     5e+02     232     252 ..     327     347 ..     322     351 .. 0.84

  Alignments for each domain:
  == domain 1  score: 8.1 bits;  conditional E-value: 0.00025
                 SGT.TTS-EEEE.....EE-SSSEEEEEETTS-EEEEEE..ETTEEEEEEEEE-------B--TTTT.TSS--SS---TT-ECEEEEET.....TTTEE CS
      Nup160 142 sslstsskpgrl.....aavssnellvsladggllklkr..dedggawkesvfepksfllslsgllglladpsrrksgasvalsldvavavveigqtyl 233
                 +s  +++ p +      +a++ +++++ ++dg+l++ ++  +  ++      + +++   +  g +g  a +s++ s+   +ls  ++v v+ +++ ++
  KOO24134.1 147 ASR-VFRGPRLSatsvaVAPDESFVVCGCKDGALVRWDLqsGARTKLLGGRATALHGARAGGGGEHGDGAGTSKGNSDQTGHLSDVLSVVVS-ADSRLI 243
                 444.5566665567777999999999***********9977677777888888888888888899998888889999999777766666444.5***** PP

                 EEEETT-EEEEEETTTTEEEEE CS
      Nup160 234 falsrdgkLrvWnlltgkclat 255
                 ++  rdg + +W+ +t +++ +
  KOO24134.1 244 ASGGRDGAILLWDCRTSRVVHQ 265
                 ****************999876 PP

  == domain 2  score: 2.3 bits;  conditional E-value: 0.015
                 EEEETT-EEEEEETTTTEE CS
      Nup160 234 falsrdgkLrvWnlltgkc 252
                 ++ + d+++rvW+++    
  KOO24134.1 288 YSGCDDRTVRVWDVEQRGY 306
                 56699*********97655 PP

  == domain 3  score: -1.0 bits;  conditional E-value: 0.14
                 EEEEEETT-EEEEEETTTTEE CS
      Nup160 232 ylfalsrdgkLrvWnlltgkc 252
                 +l++ s d+++r+W ++  ++
  KOO24134.1 327 HLLSGSADRTVRLWKVDEETQ 347
                 788889********9998765 PP

>> BBS2_Mid  Ciliary BBSome complex subunit 2, middle region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.0       1.5   5.3e+03      14      30 ..     286     302 ..     279     308 .. 0.77
   2 ?   10.6   0.0   0.00013      0.45       8      69 ..     321     385 ..     316     394 .. 0.83

  Alignments for each domain:
  == domain 1  score: -2.5 bits;  conditional E-value: 1.5
    BBS2_Mid  14 eLvvgsddfeirvfkee 30 
                 eL  g dd ++rv++ e
  KOO24134.1 286 ELYSGCDDRTVRVWDVE 302
                 77889999999988765 PP

  == domain 2  score: 10.6 bits;  conditional E-value: 0.00013
    BBS2_Mid   8 dgdgeneLvvgsddfeirvfkee...elvaeitetekvvslarlekerfayaleNGtvgvyekke 69 
                 d   e++L+ gs d ++r++k +   +lv++   t+ v ++a l+++ f+ + + G++  ++ k 
  KOO24134.1 321 DALCEHHLLSGSADRTVRLWKVDeetQLVFTHGHTAPVDCVAMLHADAFVSGSQDGSLTFWSAKR 385
                 4555789*************97743457888889999999*****************99887765 PP

>> WD40_like  WD40-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.1   0.0     0.028     1e+02       2      38 ..     230     266 ..     229     273 .. 0.88
   2 ?    6.4   0.0    0.0014       4.9      14      66 ..     327     379 ..     283     394 .. 0.66

  Alignments for each domain:
  == domain 1  score: 2.1 bits;  conditional E-value: 0.028
   WD40_like   2 eiYsidiskkgslilyGgkddkctvlkleslesvsiv 38 
                 ++ s+ +s ++ li+ Gg+d  + + + ++  +v  +
  KOO24134.1 230 DVLSVVVSADSRLIASGGRDGAILLWDCRTSRVVHQM 266
                 688999*********************9999888765 PP

  == domain 2  score: 6.4 bits;  conditional E-value: 0.0014
   WD40_like  14 lilyGgkddkctvlkleslesvsivesfedSvifvklldddlilvvtlDGtil 66 
                  +l G+ d ++++ k++ +++    ++ +  v  v +l+ d ++ ++ DG ++
  KOO24134.1 327 HLLSGSADRTVRLWKVDEETQLVFTHGHTAPVDCVAMLHADAFVSGSQDGSLT 379
                 45557777777777777777777777777777777777777777777777663 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (532 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       733  (0.0408835); expected 358.6 (0.02)
Passed bias filter:                      479  (0.0267165); expected 358.6 (0.02)
Passed Vit filter:                        50  (0.00278878); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.62u 0.27s 00:00:00.89 Elapsed: 00:00:00.44
# Mc/sec: 3648.46
//
Query:       KOO24135.1  [L=351]
Description: vacuolar protein-sorting protein bro1 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.9e-32  112.6   0.0    2.2e-32  112.3   0.0    1.0  1  BRO1      BRO1-like domain


Domain annotation for each model (and alignments):
>> BRO1  BRO1-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  112.3   0.0   1.2e-36   2.2e-32      63     340 ..      51     332 ..      11     349 .. 0.80

  Alignments for each domain:
  == domain 1  score: 112.3 bits;  conditional E-value: 1.2e-36
                 XXXXXXXXXXXXXXXXXXXXXXX..XX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX..XXX.XXXXXXXXXXXXXXXXXXXXXXX CS
        BRO1  63 lelllkYyaqLellelrfpieeq.slk.veFtWydafssskkvtqsslafEkasvLFniaalysqlaasqnrstdeglkrackyfqqAAgvfqylkenf 159
                 ++l+ +Yy    + ++     +  s      +W+daf+ +++  +ss+ +E a+ LFn+aa +  la+ + +      k+a+k++qqAA +++ l e +
  KOO24135.1  51 RNLCGRYYTLAAAADAACGLRRAsS-DlPRLAWTDAFTGHEQPPTSSWGYELACALFNLAASLADLANGKPH------KDAFKLYQQAAFTLDKLAE-V 141
                 6666666666666666665532312.325689*****98999999***********************9965......99*****************.4 PP

                 XXXX......XXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXX.......XXXXXXXXXXXXXXXXXXXXXXXX CS
        BRO1 160 lhapte..eesedlspetlkaLeklmlAqAqecfleka.ikdnkkdsliaKlaaqvaelYeealealkkselidekeevlkklldksWikhvqvKashf 255
                 +++     +  edls +t+++L+ lmlAqAq  ++ k   +++ ++ ++ Klaa++a+++ee+ e+++++++         + + ++W++++++   + 
  KOO24135.1 142 SQQE-GpwHGCEDLSGDTVSILSGLMLAQAQKALYLKIrEENSAQPEMLEKLAAECASMFEEVSEQIRRTNKRPF------RSFSSEWLAVIEANRLLL 233
                 4433.3578889**************************776799***********************65444333......459*************** PP

                 XXXXXXXXXX........XXXXXXXXXXXXXXXXXXXXXXXXXX...............XXXXXXXXXXXXXXXXXXX..XXXXXX.XXXXXXXXXXXX CS
        BRO1 256 kAlaqyrqal........aaeeakkyGeeiarlqkAlellkealkskkaeel....ledlkglkdvveeklkeaekDN..dlIYhe.evPsesslpeik 339
                   laq ++a         + e+ ++yG+++arl + ++l   al+  ++       ++ + +l+ +ve++++ea ++   d  Y e e P+ +slp+ k
  KOO24135.1 234 GGLAQQHAAKthrinadaVFERVNEYGHQLARLAEGRRLTGAALETCRTH-AppivHDHFGRLHASVEKEYAEAYREHlpDGPYWEyEPPPIDSLPPCK 331
                 **********99999998888999***************99996554433.24777******************9985447777774444557777765 PP

                 X CS
        BRO1 340 k 340
                 +
  KOO24135.1 332 R 332
                 4 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (351 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       554  (0.0308997); expected 358.6 (0.02)
Passed bias filter:                      467  (0.0260472); expected 358.6 (0.02)
Passed Vit filter:                        51  (0.00284455); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.22s 00:00:00.70 Elapsed: 00:00:00.38
# Mc/sec: 2742.73
//
Query:       KOO24136.1  [L=761]
Description: nucleolar RNA helicase 2-like protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.7e-45  153.8   0.0    6.3e-45  153.1   0.0    1.4  1  DEAD           DEAD/DEAH box helicase
    5.6e-29  100.7   0.1    8.5e-28   96.9   0.0    2.4  2  Helicase_C     Helicase conserved C-terminal domain
      3e-08   34.2   0.0    6.9e-08   33.0   0.0    1.7  1  SRP_SPB        Signal peptide binding domain
      5e-06   26.6   0.0    9.5e-06   25.7   0.0    1.4  1  ResIII         Type III restriction enzyme, res subunit
     0.0001   21.7   0.0    0.00028   20.3   0.0    1.7  1  CMS1           U3-containing 90S pre-ribosomal complex subuni
    0.00049   20.3   0.0     0.0016   18.7   0.0    1.9  1  GUCT           GUCT (NUC152) domain
  ------ inclusion threshold ------
      0.024   14.1   0.0      0.054   13.0   0.0    1.5  1  Ehrlichia_rpt  Ehrlichia tandem repeat (Ehrlichia_rpt)
       0.12   12.9   0.7        7.8    7.0   0.0    2.5  2  Formin_GBD_N   Formin N-terminal GTPase-binding domain


Domain annotation for each model (and alignments):
>> DEAD  DEAD/DEAH box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  153.1   0.0   2.8e-48   6.3e-45       1     173 [.     131     303 ..     131     306 .. 0.95

  Alignments for each domain:
  == domain 1  score: 153.1 bits;  conditional E-value: 2.8e-48
                 -HHHHHHHHHHHTTCEEEEEESTTSSHHHHHHHHHHHHHHHS......TTSTS-EEEEEESSHHHHHHHHHHHHHHTTTSTSEEEEEETTSSHHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx......xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD   1 tdiQaeaiplilgggdvlvaaeTGsGKTlaflipvlqivyet......kgktgpkalivePtreLaeqtlnnlkkfkkyidlrvlliiggvaardqlsk 93 
                 t+iQa++++ +  g+d+l++ +TG+GKTlaf++p++q+++e+      ++ ++p++l+++PtreLa+q+ + ++ ++ + +++v+ ++gg+++  q ++
  KOO24136.1 131 TPIQAQSYDMLRAGHDMLGRSRTGTGKTLAFALPLVQRLAEEqrrerpERGRAPRMLVLVPTRELAKQVGEVIQMLGRPHRMEVHTFTGGTPYPPQERA 229
                 89**************************************9999999889999**************************99****************** PP

                 HHTTCSEEEEEHHHHHHHHHCTSSHCTTEEEEEEETHHHHHHTTTHHHHHHHHHHSHHHCTTSTTTSEEEEEESSBSHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD  94 ldngvdivvgtpgrlddllstgklnlsqvrflVlDEadrlldqgfsdfinrilnqlpqitcdgklqrqvivlSATlpkdv 173
                 l+ng+d++vgtpgr++d+l++g l l+++r +VlDEad++l++gf++++++il++ +       ++rq++++SAT p  v
  KOO24136.1 230 LRNGIDVLVGTPGRIIDHLNNGGLLLDNLRHVVLDEADEMLNMGFKEDVEQILEAAS------AQDRQTVLFSATHPPWV 303
                 ********************************************************2......36688*******98666 PP

>> Helicase_C  Helicase conserved C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.0   0.0      0.23   5.2e+02      93     110 ..     195     212 ..     162     262 .. 0.82
   2 !   96.9   0.0   3.8e-31   8.5e-28      14     111 .]     358     455 ..     347     455 .. 0.90

  Alignments for each domain:
  == domain 1  score: 1.0 bits;  conditional E-value: 0.23
                 SSSSHHHHHHHHTTSSST CS
  Helicase_C  93 lprnvtsyiqriGRtgRa 110
                 l ++v ++iq+ GR +R+
  KOO24136.1 195 LAKQVGEVIQMLGRPHRM 212
                 445667777888877775 PP

  == domain 2  score: 96.9 bits;  conditional E-value: 3.8e-31
                 TTTSEEEEEESSHHHHHHHHHHHHHT..TSTEEEESTTSTHHHHHHHHHHHHTTSSSEEEESGGGTSSSTSTTESEEEESSSSSSHHHHHHHHTTSSST CS
  Helicase_C  14 eeggkilifvntidrlekvklllekk..gikvavlhgelpqnereeileqfnkgesdvLiatdvaerGidipkvnlVinfdlprnvtsyiqriGRtgRa 110
                  e+ k+++f+ t+++++  +l  ++   +++  +lhg+ +q +r+ +l++f++g+++vL+atdva+rGidi++++lV+++ lp++++sy++r+GRtgRa
  KOO24136.1 358 TENAKTIVFTSTKREVD--ELCASSAlsALSPQALHGDFSQAQRDLTLRRFREGHFNVLVATDVAARGIDIQGIDLVVQYRLPQDPDSYVHRSGRTGRA 454
                 5789************9..55533335589999*****************************************************************9 PP

                 T CS
  Helicase_C 111 g 111
                 g
  KOO24136.1 455 G 455
                 7 PP

>> SRP_SPB  Signal peptide binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.0   0.0   3.1e-11   6.9e-08       8      97 ..     624     718 ..     617     720 .. 0.77

  Alignments for each domain:
  == domain 1  score: 33.0 bits;  conditional E-value: 3.1e-11
                 HHHHHHHHCCCCCCHHHHCCC......H....CCCCCHHHHHHHHHTTSBHHHHHSGCG-...........HHHHHHHHHHTTS-HHHHHHHHHHHHHH CS
     SRP_SPB   8 leqlqqikkmGplskllsmiPgmsae.akae.eeaekklkrieaiidSMTkeErdspekll.........kesRkrRiArGsGtsvqevnellkqfeqm 95 
                 l+  +   k+G+     + iPgm +    a+ +e+++k+ + e i++ M ++Er++pe l+            R++R+A  sG+  +ev  +l+qfe m
  KOO24136.1 624 LTMSSAFAKLGG-----KGIPGMPTLtD-AQlAETKQKFLKHEKIVEVMLEDERANPEMLIedlksggarPGPRIQRLAVASGQPETEVGLFLMQFEAM 716
                 555555555544.....44999887753.333667899********************88866655543225**************************9 PP

                 HH CS
     SRP_SPB  96 kk 97 
                 ++
  KOO24136.1 717 RE 718
                 86 PP

>> ResIII  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.7   0.0   4.3e-09   9.5e-06      32     168 ..     152     298 ..     132     300 .. 0.87

  Alignments for each domain:
  == domain 1  score: 25.7 bits;  conditional E-value: 4.3e-09
                 STTSTHHHHH.HHHHHHH-S.............-EEEEESSHHHHHHHHHHGGGGTGG....GEEEESSS-B--........-SEEEEEHHHHHHTH.. CS
      ResIII  32 aTGtGKTlva.aklierllkkgkee........kflflvprkslleqtleefkkflseaykeigkkvsgdkkka.kekdstnkkilvttiqsldadsee 120
                  TGtGKTl   + l++rl++++++e        ++l+lvp+++l +q  e ++ +  ++++e+ +++ g  + + ++  ++ +++lv t  ++  ++  
  KOO24136.1 152 RTGTGKTLAFaLPLVQRLAEEQRRErpergrapRMLVLVPTRELAKQVGEVIQMLGRPHRMEVHTFTGGTPYPPqERALRNGIDVLVGTPGRIIDHL-- 248
                 6*******99899*******99999********************************9999999998888888866777999***************.. PP

                 ......HHHTTT-SEEEEETGGGTTS....TTTHHHHHT---..SEEEEEESS CS
      ResIII 121 eeeeseellrdrfdviiiDEaHrlgak...kswreilekfke..avllglTAT 168
                    ++  ll d+   ++ DEa  +  +   + +++ile+ ++     + ++AT
  KOO24136.1 249 ---NNGGLLLDNLRHVVLDEADEMLNMgfkEDVEQILEAASAqdRQTVLFSAT 298
                 ...77888888888999999999998877668999988775544777888998 PP

>> CMS1  U3-containing 90S pre-ribosomal complex subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.3   0.0   1.3e-07   0.00028     176     209 ..     232     265 ..     228     280 .. 0.92

  Alignments for each domain:
  == domain 1  score: 20.3 bits;  conditional E-value: 1.3e-07
        CMS1 176 srigiavGtpgRildLleeeslsvdeLkrivlDa 209
                 + i + vGtpgRi+d l+++ l +d+L+++vlD 
  KOO24136.1 232 NGIDVLVGTPGRIIDHLNNGGLLLDNLRHVVLDE 265
                 567889**************************96 PP

>> GUCT  GUCT (NUC152) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.7   0.0     7e-07    0.0016       4      39 ..     546     582 ..     543     596 .. 0.77

  Alignments for each domain:
  == domain 1  score: 18.7 bits;  conditional E-value: 7e-07
        GUCT   4 eikkRSLlsseegfvTllltssse.irtvgyvwsilk 39 
                  +++RSLl++eeg++Tlll++s+  + t g ++ +++
  KOO24136.1 546 TLTQRSLLTGEEGQTTLLLEASDGsMLTAGDAMAAIN 582
                 589*****************99887555555555444 PP

>> Ehrlichia_rpt  Ehrlichia tandem repeat (Ehrlichia_rpt)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.0   2.4e-05     0.054      18      32 ..     668     682 ..     664     686 .. 0.90

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 2.4e-05
  Ehrlichia_rpt  18 EQEkTNPEvLikDLQ 32 
                    E E+ NPE+Li+DL 
     KOO24136.1 668 EDERANPEMLIEDLK 682
                    99***********95 PP

>> Formin_GBD_N  Formin N-terminal GTPase-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.6   0.2     0.042        94       7      41 ..      88     123 ..      83     134 .. 0.83
   2 ?    7.0   0.0    0.0035       7.8      24      55 ..     183     214 ..     170     218 .. 0.79

  Alignments for each domain:
  == domain 1  score: 3.6 bits;  conditional E-value: 0.042
  Formin_GBD_N   7 ldDsDPfatt.ssflePtrppvftlelelplseqla 41 
                   ldD DP a+      +P rpp+  ++++ + ++ la
    KOO24136.1  88 LDDDDPNAAPtPDPDDPDRPPIAMFNVDETTVTMLA 123
                   99****9987467778**********9988777665 PP

  == domain 2  score: 7.0 bits;  conditional E-value: 0.0035
  Formin_GBD_N  24 rppvftlelelplseqlaavhrllkaPhkled 55 
                    p +  l  +  l++q+ +v+++l  Ph++e 
    KOO24136.1 183 APRMLVLVPTRELAKQVGEVIQMLGRPHRMEV 214
                   355667777899*****************985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (761 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       538  (0.0300073); expected 358.6 (0.02)
Passed bias filter:                      380  (0.0211947); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.58u 0.27s 00:00:00.85 Elapsed: 00:00:00.40
# Mc/sec: 5705.75
//
Query:       KOO24137.1  [L=504]
Description: hypothetical protein Ctob_004825 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.024   14.8   0.0       0.93    9.6   0.0    2.3  2  DUF563    Protein of unknown function (DUF563)


Domain annotation for each model (and alignments):
>> DUF563  Protein of unknown function (DUF563)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   0.0   5.2e-05      0.93     170     202 ..       1      33 [.       1      38 [. 0.88
   2 ?    2.7   0.0    0.0065   1.2e+02     117     146 ..     406     438 ..     329     439 .. 0.88

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 5.2e-05
      DUF563 170 iFmppgttvielvppnrldnsfenlaallglky 202
                 +Fm+pg++ +el p + +  s+e+la ++g+ y
  KOO24137.1   1 MFMRPGSAFMELNPYKFFYSSYEELATVSGVLY 33 
                 7***********777777777*********998 PP

  == domain 2  score: 2.7 bits;  conditional E-value: 0.0065
      DUF563 117 sRrilNeeevl.kllpkrg..fevvdpeslsfe 146
                 +R i+N e +l ++l++rg  +++v+ e+l++ 
  KOO24137.1 406 GRGITNSERLLrAVLDRRGvrVQRVSAEDLPLV 438
                 899********9*******66668999999986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (504 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       555  (0.0309554); expected 358.6 (0.02)
Passed bias filter:                      434  (0.0242066); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.28s 00:00:00.77 Elapsed: 00:00:00.42
# Mc/sec: 3601.25
//
Query:       KOO24138.1  [L=305]
Description: hypothetical protein Ctob_004827 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
  ------ inclusion threshold ------
      0.059   13.1   2.1       0.11   12.3   2.1    1.4  1  FAM184           Family with sequence similarity 184, A and B
        0.2   11.5  10.8       0.12   12.3   8.4    1.9  1  Apolipoprotein   Apolipoprotein A1/A4/E domain
       0.23   10.7   0.0       0.32   10.2   0.0    1.1  1  DUF2130          Uncharacterized protein conserved in bacteri
       0.41   10.7   3.9       0.34   11.0   1.7    2.0  2  Ubiq_cyt_C_chap  Ubiquinol-cytochrome C chaperone


Domain annotation for each model (and alignments):
>> FAM184  Family with sequence similarity 184, A and B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   2.1   2.4e-05      0.11      89     147 ..     158     216 ..     144     230 .. 0.73

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 2.4e-05
      FAM184  89 kleaehsqkvvelsreveevkrkFeeklrqfaqlqeqleqekekaLeelrkkhreevee 147
                 +l+++ +   ++++r +e+++++F  + ++++++ +++  e+++a e + ++h+ee  +
  KOO24138.1 158 ALHTSVESLKQHFQRRLEALEADFVRRAQDLSDALARAVTERKRASEAVVAAHAEECAD 216
                 34444444445678888888888888888888888888899999999999999999754 PP

>> Apolipoprotein  Apolipoprotein A1/A4/E domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   8.4   2.6e-05      0.12     114     171 ..     154     215 ..     108     231 .. 0.63

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 2.6e-05
                     HHHHHHCHHHHHHHHHHHHHHHHHHH-----..-----SSSHHHHHHHTS-T....TSHHHH CS
  Apolipoprotein 114 alkarlapyveelrqklaerleelkeslaphaeeveerlssrveelreklee....qaeelr 171
                     ++++ l+  ve+l+q  ++rle+l+  +  +a+ + ++l++ v+e +++ e+     aee  
      KOO24138.1 154 QQREALHTSVESLKQHFQRRLEALEADFVRRAQDLSDALARAVTERKRASEAvvaaHAEECA 215
                     34555555555555555555555555555555555555555555555444442222333332 PP

>> DUF2130  Uncharacterized protein conserved in bacteria (DUF2130)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.0   7.2e-05      0.32     186     250 ..     158     222 ..     140     225 .. 0.88

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 7.2e-05
     DUF2130 186 efetkkeefkekfrknieaavekfqkaieeidkelekikekleksinklllatigmygnkieelk 250
                    t+ e +k+ f++++ea    f    ++++++l +  +++++ ++ ++ a+++   + +  ++
  KOO24138.1 158 ALHTSVESLKQHFQRRLEALEADFVRRAQDLSDALARAVTERKRASEAVVAAHAEECADRLATMT 222
                 45677888********************************************9998877776665 PP

>> Ubiq_cyt_C_chap  Ubiquinol-cytochrome C chaperone
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   1.7   7.6e-05      0.34      64     116 ..     160     211 ..     117     226 .. 0.77
   2 ?   -3.5   0.0       2.3     1e+04      82     119 ..     246     283 ..     246     286 .. 0.64

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 7.6e-05
  Ubiq_cyt_C_chap  64 pkrmkklaeafygrllaydealgsddaaLaaalwrnvykaslevdleklaglv 116
                       ++++ l++ f  rl a+++ +   +++L++al+r+v + +  ++ +++a+ +
       KOO24138.1 160 HTSVESLKQHFQRRLEALEADFVRRAQDLSDALARAVTERK-RASEAVVAAHA 211
                      678999*********************************99.45555554444 PP

  == domain 2  score: -3.5 bits;  conditional E-value: 2.3
  Ubiq_cyt_C_chap  82 dealgsddaaLaaalwrnvykaslevdleklaglvgyv 119
                      d+al+s +a+  a+l rn  +as     ++l +l++ +
       KOO24138.1 246 DDALMSVSADVDAILGRNRPMASGPGPRARLDELIAAA 283
                      56777778888888888877777444444666666555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (305 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1051  (0.0586201); expected 358.6 (0.02)
Passed bias filter:                      624  (0.0348039); expected 358.6 (0.02)
Passed Vit filter:                        83  (0.00462937); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.53u 0.28s 00:00:00.81 Elapsed: 00:00:00.44
# Mc/sec: 2077.13
//
Query:       KOO24139.1  [L=205]
Description: lea protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (205 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       305  (0.0170115); expected 358.6 (0.02)
Passed bias filter:                      278  (0.0155056); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.41u 0.24s 00:00:00.64 Elapsed: 00:00:00.40
# Mc/sec: 1538.42
//
Query:       KOO24140.1  [L=81]
Description: fructose-1,6-bisphosphate aldolase class i [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (81 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       473  (0.0263818); expected 358.6 (0.02)
Passed bias filter:                      389  (0.0216967); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.23s 00:00:00.55 Elapsed: 00:00:00.36
# Mc/sec: 675.90
//
Query:       KOO24141.1  [L=599]
Description: zeta-carotene desaturase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.4e-11   43.1   0.0    4.5e-11   42.7   0.0    1.1  1  Amino_oxidase   Flavin containing amine oxidoreductase
    8.3e-08   32.4   0.0    2.7e-07   30.7   0.0    1.9  1  NAD_binding_8   NAD(P)-binding Rossmann-like domain
    0.00016   21.0   0.1    0.00068   19.0   0.0    1.8  2  Pyr_redox_2     Pyridine nucleotide-disulphide oxidoreductase
     0.0029   16.9   0.1     0.0055   16.0   0.1    1.3  1  AlaDh_PNT_C     Alanine dehydrogenase/PNT, C-terminal domain
     0.0086   16.6   0.0      0.027   15.0   0.0    1.9  1  Pyr_redox       Pyridine nucleotide-disulphide oxidoreductase
     0.0096   15.5   0.1      0.022   14.3   0.1    1.6  1  DAO             FAD dependent oxidoreductase
  ------ inclusion threshold ------
       0.02   14.0   0.1      0.033   13.3   0.1    1.3  1  GIDA            Glucose inhibited division protein A
      0.066   12.1   0.3        0.1   11.4   0.3    1.2  1  Trp_halogenase  Tryptophan halogenase
      0.075   12.4   0.2       0.12   11.7   0.2    1.3  1  FAD_oxidored    FAD dependent oxidoreductase
      0.077   12.1   0.5       0.24   10.4   0.0    2.0  3  FAD_binding_2   FAD binding domain
      0.079   12.2   0.1       0.19   10.9   0.1    1.5  1  FAD_binding_3   FAD binding domain
      0.079   11.6   0.1       0.11   11.2   0.1    1.1  1  HI0933_like     HI0933-like protein
       0.16   11.8   0.1       0.25   11.2   0.1    1.2  1  3HCDH_N         3-hydroxyacyl-CoA dehydrogenase, NAD binding 


Domain annotation for each model (and alignments):
>> Amino_oxidase  Flavin containing amine oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.7   0.0   3.3e-14   4.5e-11       6     451 ..      46     541 ..      42     542 .. 0.74

  Alignments for each domain:
  == domain 1  score: 42.7 bits;  conditional E-value: 3.3e-14
                    HHHHHHHTTEEEEEEESSSSSBTTS-EEEETTEEEESS--EEETTTHHHHHHHHH.TTCCCCEEEESCCGCEEEEETTEECC............TT CS
  Amino_oxidase   6 aArqLlsaGfdVtvlEardrvGGRirtvrsdGylielGamwftgagnpllellke.lgledslslpdpgapkrvlskggref............pg 88 
                    aA+ L ++G +Vt+l a + + G+       G ++e G   f ++++++  l+   lgl+++ ++ d++    + s +g e+             +
     KOO24141.1  46 AAKALIENGAKVTLLDAVPDPTGKTPFLTPTGKPFEAGTRGFWMDYPNIVSLVTSdLGLDENAVFTDYT-NSSFYSPDGLEAtapvfskgakifGQ 140
                    9**********************98888888*********************9999*************.44455666666667777777777677 PP

                    EECHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHTSTTTTCB CS
  Amino_oxidase  89 dlspvpaewealleqgalsaellsleeklrlgleallqktldeldldskslaesleelgrrepgdvevwdrliepelfaklefasglfagdpsels 184
                    +++++p+++ +++ +++l  e + + +++     +       ++ +d+ ++++  + ++++ + +  +  r++++  f k  ++ glf   p+els
     KOO24141.1 141 TIPELPSPLGQVVATVDLF-ERVPIADRVTMLGLLYG---MLDFVRDETTFEAYDRMSAHQLFIKMGISKRMVDD--FIKPTLLVGLFK-PPEELS 229
                    7777799999999988888.55555555544444444...33344555555555555555555555555555553..555577777765.679999 PP

                    HHHHTCCCCHHHHHTSCCCEE..............................TTHTHHHHHHHHHTTTTEEEETSEEEEEEEEETTC...EEEEETT CS
  Amino_oxidase 185 aklalpllwelegfggslllp..............................rgGlsqlpealaeelrgldirlntrVkeikregdg...vtvtled 247
                    a +a+ ll+++   ++  + +                              +g  ++++   ++ +  l+++ ++ V+ ++ ++++    ++t++d
     KOO24141.1 230 AAVAMELLYFYALAHQTAFDVrwiksksitelilapladklasyklpippaQGTAGEVVAVPEA-EAALTVLGGSFVSGLQLDPGTgqvSGLTYTD 324
                    999999999999999887777999**************************75556666666666.889**************66665667788886 PP

                    STEE.....EESE.EEE-S-HHHHH.SSEEESCC.SH.HHHHHHHHSEEEEEEEEEEEESSGG...SGCSTSECECECCCEEETTTEEEEECC... CS
  Amino_oxidase 248 gevv.....eaDa.VvvTvplgvlk.ailfsPpl.pd.ekaeairnlgfgsvnkvilefdrkf...wednalgqgvlvseltttlgeafissd... 328
                      +      e+ + +v+++    +k  ++ sP l  + +   a+++l++  v+ v l+ dr +    + n      ++ e ++++g +f+ +d   
     KOO24141.1 325 RATGekrslEGLSgCVLALGAKGMKsVVQGSPALaRRaPELCAAASLDAIDVISVRLWLDRTVptrTPANV----FSRFEELRGAGGTFFMLDqlq 416
                    66666668855555***********99999998844478888999******************54222222....244445555555555555799 PP

                    .......ECCCSTTTEEEEEEEEECHHHHHHHTTS-HHHHHHHHHHHHHHHHTGTSSTCSEEEEEECCTETTTSSSEEE.BTTHHHHHHHHHHCHH CS
  Amino_oxidase 329 .......fpsrappgkglvllvyvggdaaneleslsdeelvqavlrdLrklfgeevpepkatlvtrWhtdplargsysyvsvgpghedydplakpe 417
                           + + +p+g+++  + + ++ a      l+deel + +++dL  +   +v+  +++  ++   ++++ g+ +   + pg+++ +p+ ++ 
     KOO24141.1 417 ddnptllWGNAEPQGSVV-ACDFYNAGALLA---LPDEELTRILMEDLLPV---AVSAFGEAKLVDSYVQRFP-GAVTW--FSPGSYRKRPPLQT- 501
                    9999**888888888888.777777555555...4*************654...3333333333333338999.44444..55556888888888. PP

                    CSTTEEE.SGGGCTTT.....TTS.HHHHHHHHHHHHHHH CS
  Amino_oxidase 418 gdprlffAGehtsrey.....pgt.vegAilSGlraAari 451
                    ++++l+ AG+++ ++       g   e A+ SGl+a++++
     KOO24141.1 502 PVSNLVCAGDWVRMGErehgaKGLcQERAYVSGLEASNAL 541
                    8***********9764222226788999999999999876 PP

>> NAD_binding_8  NAD(P)-binding Rossmann-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.7   0.0     2e-10   2.7e-07       1      65 [.      36      98 ..      36     100 .. 0.95

  Alignments for each domain:
  == domain 1  score: 30.7 bits;  conditional E-value: 2e-10
                   EE--SHHHHHHHHHHHCCTEEEEEE-SSSSSSGGG-EECETTCEECTS---EEETTHHHHCHHHH CS
  NAD_binding_8  1 IvGaGlsGlvaAylLakagfdvlllekrdrlGGraasyevpgvrvdygahifhgsgyypnvrrll 65
                   IvG+G sG  aA +L ++g++v+ll++ +++ G+    +  g +++ g + f+   +ypn+  l+
     KOO24141.1 36 IVGGGWSGWGAAKALIENGAKVTLLDAVPDPTGKTPFLTPTGKPFEAGTRGFWM--DYPNIVSLV 98
                   9****************************************************9..699987765 PP

>> Pyr_redox_2  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.0   0.0   4.9e-07   0.00068       2      35 ..      33      70 ..      24      89 .. 0.77
   2 ?   -1.3   0.0      0.72     1e+03      75     119 ..     307     355 ..     276     372 .. 0.76

  Alignments for each domain:
  == domain 1  score: 19.0 bits;  conditional E-value: 4.9e-07
                 SEEEE--SHHHHHHHHHHHHHTS-EEEEE....TTHCH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxx....xxxxx RF
  Pyr_redox_2  2 dvvviGgGpAGlaaaltlaqagakvtlve....legtc 35
                 +++++GgG+ G+ aa+ l ++gakvtl++     +g +
   KOO24141.1 33 HIAIVGGGWSGWGAAKALIENGAKVTLLDavpdPTGKT 70
                 58899999999999999999999999997444433333 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 0.72
                  CEEEEESCEEEEETEEEC...TCEEEEEE.SEEEE---EEE-BCTCTTC CS
                  xxxxxxxxxxxxxxxxxx...xxxxxxxx.xxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2  75 vvkidpgkkkvklekkke...gdeekiay.dklvlAtGssprdlgipGv 119
                  ++++dpg ++v   + ++   g++++++    +vlA G++  +  ++G 
   KOO24141.1 307 GLQLDPGTGQVSGLTYTDratGEKRSLEGlSGCVLALGAKGMKSVVQGS 355
                  5677777777766555555668888888778899999999888877776 PP

>> AlaDh_PNT_C  Alanine dehydrogenase/PNT, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.1     4e-06    0.0055      27      61 ..      30      64 ..      18      71 .. 0.88

  Alignments for each domain:
  == domain 1  score: 16.0 bits;  conditional E-value: 4e-06
                 ---EEEEESTSHHHHHHHHHHHHTT-EEEEEESSH CS
  AlaDh_PNT_C 27 epakvlviGgGvaGlqAiatakglgakVtvlDvrp 61
                  pa++ ++GgG  G+ A+++  + gakVt+lD  p
   KOO24141.1 30 PPAHIAIVGGGWSGWGAAKALIENGAKVTLLDAVP 64
                 69******************************866 PP

>> Pyr_redox  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.0   1.9e-05     0.027       1      31 [.      33      63 ..      33      71 .. 0.90

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 1.9e-05
                EEEEECSSHHHHHHHHHHHHTTSEEEEEESS CS
   Pyr_redox  1 kvvvvGgGyiglElAgalaelgkkVtvvers 31
                ++++vGgG++g  +A+al e g+kVt++++ 
  KOO24141.1 33 HIAIVGGGWSGWGAAKALIENGAKVTLLDAV 63
                79*************************9875 PP

>> DAO  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.3   0.1   1.6e-05     0.022       1      35 [.      33      68 ..      33      71 .. 0.91

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 1.6e-05
                EEEEECTSHHHHHHHHHHHHTT..EEEEESSSSTTSS CS
         DAO  1 dvviiGGGiiGlstAyeLarrg..Vtllekgdiagsg 35
                +++i+GGG  G ++A +L + g  Vtll++ +++  g
  KOO24141.1 33 HIAIVGGGWSGWGAAKALIENGakVTLLDAVPDPT-G 68
                79*******************9*******988876.4 PP

>> GIDA  Glucose inhibited division protein A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.1   2.4e-05     0.033       2      29 ..      34      61 ..      33      78 .. 0.84

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 2.4e-05
                EEEE-SSHHHHHHHHHHHHTT--EEEEE CS
        GIDA  2 viViGgGhAGceAAlaaarlGakvlLit 29
                + ++GgG++G  AA a+ + Gakv+L+ 
  KOO24141.1 34 IAIVGGGWSGWGAAKALIENGAKVTLLD 61
                789***********************94 PP

>> Trp_halogenase  Tryptophan halogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.3   7.4e-05       0.1       2      32 ..      34      61 ..      33      67 .. 0.88

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 7.4e-05
                    EEEE--SHHHHHHHHHHHHHTTTSSEEEEEE CS
  Trp_halogenase  2 ivivGGGtaGwlaAaalakalkgklevtlve 32
                    i ivGGG +Gw aA al + +   ++vtl++
      KOO24141.1 34 IAIVGGGWSGWGAAKALIENG---AKVTLLD 61
                    89***************9998...7788876 PP

>> FAD_oxidored  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.2   8.7e-05      0.12       2      30 ..      34      62 ..      33      68 .. 0.93

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 8.7e-05
  FAD_oxidored  2 vvVvGGgpaGvaAAiaAaraGakvlLvee 30
                  + +vGGg +G  AA a  ++Gakv L++ 
    KOO24141.1 34 IAIVGGGWSGWGAAKALIENGAKVTLLDA 62
                  78************************985 PP

>> FAD_binding_2  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.0   0.00018      0.24       2      34 ..      34      66 ..      33      72 .. 0.88
   2 ?   -3.3   0.1       2.6   3.5e+03     156     203 ..     297     347 ..     280     362 .. 0.71
   3 ?   -1.9   0.0      0.95   1.3e+03      77      97 ..     468     489 ..     453     552 .. 0.80

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00018
                   EEEE--SHHHHHHHHHHHHTTT-EEEEESSSGG CS
  FAD_binding_2  2 viViGsGlAGLaAAleaaeaGlkvavvekeqef 34
                   + ++G+G +G  AA ++ e+G+kv++++ ++  
     KOO24141.1 34 IAIVGGGWSGWGAAKALIENGAKVTLLDAVPDP 66
                   68*************************998865 PP

  == domain 2  score: -3.3 bits;  conditional E-value: 2.6
                    EEEEESEEEEEEEECTT..EEEEEEEEETTTTCEEEEEES.EEEE-----G CS
  FAD_binding_2 156 vdfqerteadeLivedg..rvtGavvenpesgrevrirak.avvlatgGfg 203
                    ++++   ++  L  + g  +v+G + +++++g+++ ++   + vla g+ g
     KOO24141.1 297 LTVLGGSFVSGLQLDPGtgQVSGLTYTDRATGEKRSLEGLsGCVLALGAKG 347
                    666666777777777555588888888888888888877777777777655 PP

  == domain 3  score: -1.9 bits;  conditional E-value: 0.95
                    S.-HHHHHHHHHTHHHHHHHHH CS
  FAD_binding_2  77 a.dqplveafveaapeavdeLe 97 
                      +++lv+ +v++ p av+++ 
     KOO24141.1 468 FgEAKLVDSYVQRFPGAVTWFS 489
                    4488899999999999999985 PP

>> FAD_binding_3  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.1   0.00014      0.19       4      36 ..      34      66 ..      32      70 .. 0.89

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00014
                   EEEE--SHHHHHHHHHHHHTTHHEEEEESSSSS CS
  FAD_binding_3  4 VlIVGaGpaGlmlallLseaGvrvvlvekrstt 36
                   ++IVG+G +G  +a+ L e G +v+l++   + 
     KOO24141.1 34 IAIVGGGWSGWGAAKALIENGAKVTLLDAVPDP 66
                   78*************************987665 PP

>> HI0933_like  HI0933-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.1     8e-05      0.11       2      37 ..      33      68 ..      32      74 .. 0.90

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 8e-05
                 SEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSS-H CS
  HI0933_like  2 dviviGgGaAGlmaAisaakrgkrVlllekakklgr 37
                 +++++GgG +G  aA ++ ++g++V+ll++ + +  
   KOO24141.1 33 HIAIVGGGWSGWGAAKALIENGAKVTLLDAVPDPTG 68
                 689**************************9887665 PP

>> 3HCDH_N  3-hydroxyacyl-CoA dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.1   0.00018      0.25       1      32 [.      33      64 ..      33      70 .. 0.91

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00018
                EEEEE--SCCHHHHHHHHHHTT-EEEEE-S-H CS
     3HCDH_N  1 kvaviGaGtmGagiaavfasagleVvlvdise 32
                ++a++G G  G g a++++++g +V+l+d  +
  KOO24141.1 33 HIAIVGGGWSGWGAAKALIENGAKVTLLDAVP 64
                59**************************9865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (599 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       280  (0.0156172); expected 358.6 (0.02)
Passed bias filter:                      268  (0.0149478); expected 358.6 (0.02)
Passed Vit filter:                        47  (0.00262145); expected 17.9 (0.001)
Passed Fwd filter:                        13  (0.000725082); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 0.56u 0.28s 00:00:00.84 Elapsed: 00:00:00.44
# Mc/sec: 4126.72
//
Query:       KOO24142.1  [L=96]
Description: hypothetical protein Ctob_005118 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (96 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       366  (0.0204139); expected 358.6 (0.02)
Passed bias filter:                      251  (0.0139997); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.24s 00:00:00.58 Elapsed: 00:00:00.40
# Mc/sec: 727.18
//
Query:       KOO24143.1  [L=385]
Description: hypothetical protein Ctob_005117, partial [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
      0.001   19.0   0.8     0.0049   16.8   0.8    2.2  2  Fer2            2Fe-2S iron-sulfur cluster binding domain
  ------ inclusion threshold ------
      0.043   13.2   3.0      0.077   12.4   3.0    1.3  1  HEPN_SAV2148    SAV2148-like HEPN
        0.1   12.3   1.2        1.1    9.1   0.0    2.4  2  PH_17           PH domain
       0.12   12.9   0.0        1.1    9.8   0.0    2.0  2  PH_12           Pleckstrin homology domain
        9.2    4.6   6.5         13    4.1   6.5    1.2  1  Neisseria_TspB  Neisseria meningitidis TspB protein


Domain annotation for each model (and alignments):
>> Fer2  2Fe-2S iron-sulfur cluster binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   0.8   1.4e-06    0.0049      28      55 ..     133     162 ..      95     178 .. 0.76
   2 ?   -2.3   0.0       1.2   4.5e+03       4      25 ..     182     202 ..     180     205 .. 0.82

  Alignments for each domain:
  == domain 1  score: 16.8 bits;  conditional E-value: 1.4e-06
                 TTTSTTSSSSSS.SSTTEEEEEESCE.CTT CS
        Fer2  28 gidipysCgggg.CgtClvevlegev.qsd 55 
                 + +    Cgg+g C+tC++ vl+g    s+
  KOO24143.1 133 KAPGSGTCGGNGlCATCVISVLAGAEnLSE 162
                 6666778***999*********99874333 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 1.2
                 TTEEEEEEEETTTHBHHHHHHH CS
        Fer2   4 dgkevevevadgettlldaaee 25 
                  gk+++v  ad  + ll  ae+
  KOO24143.1 182 MGKKRSVRIADCAS-LLVGAES 202
                 58999999999999.8888875 PP

>> HEPN_SAV2148  SAV2148-like HEPN
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   3.0   2.2e-05     0.077     129     183 ..     273     327 ..     269     338 .. 0.91

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 2.2e-05
  HEPN_SAV2148 129 derrelelaldelevarsvvsrnralsravldqaeraaarllellgageeaaaaa 183
                   +erre  la    e+ r+ v r+ a +  +  qaer aar +  ++a++++a a+
    KOO24143.1 273 QERRERALARSAPELHRELVDREAAAEAELRAQAEREAARWMGKIEASPAQAPAR 327
                   69**********************************************9988775 PP

>> PH_17  PH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.1   0.0    0.0003       1.1      38      58 ..     235     255 ..     229     256 .. 0.88
   2 ?    1.6   0.2     0.065   2.3e+02      42      58 ..     302     318 ..     296     319 .. 0.89

  Alignments for each domain:
  == domain 1  score: 9.1 bits;  conditional E-value: 0.0003
       PH_17  38 ealiLRckdeaeAssWfeAih 58 
                  +l  Rc+d +++  W +A+h
  KOO24143.1 235 DSLDVRCTDDVSFAHWVAALH 255
                 67778***************9 PP

  == domain 2  score: 1.6 bits;  conditional E-value: 0.065
       PH_17  42 LRckdeaeAssWfeAih 58 
                 LR++ e eA  W+  i+
  KOO24143.1 302 LRAQAEREAARWMGKIE 318
                 9***********98775 PP

>> PH_12  Pleckstrin homology domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   0.0   0.00031       1.1     102     133 ..     221     258 ..     183     259 .. 0.76
   2 ?    0.7   0.0       0.2   7.3e+02      83     126 ..     272     314 ..     262     318 .. 0.79

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.00031
       PH_12 102 litl......skekellelvasseseaaeWlDGLsmLl 133
                 l+        skek +l++ +++   +a W+ +L +Ll
  KOO24143.1 221 LLIDstdesgSKEKDSLDVRCTDDVSFAHWVAALHVLL 258
                 33336777889*************************98 PP

  == domain 2  score: 0.7 bits;  conditional E-value: 0.2
       PH_12  83 sgksssslskksssklsfslitlskekellelvasseseaaeWl 126
                 +++  + +  +s+ +l+ +l+  ++  + +el a+ e+eaa W+
  KOO24143.1 272 EQERRERALARSAPELHRELVD-REAAAEAELRAQAEREAARWM 314
                 4555555677788888888998.999999**************7 PP

>> Neisseria_TspB  Neisseria meningitidis TspB protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.1   6.5    0.0037        13     336     396 ..     309     374 ..     292     381 .. 0.71

  Alignments for each domain:
  == domain 1  score: 4.1 bits;  conditional E-value: 0.0037
  Neisseria_TspB 336 eapnaqplpevspaenpannpdpdenpgtrpnpepdp..dlnpdanp...dtdgqpgtrpdspavp 396
                     ea +     e spa+ pa  p+ de+   +  pe  p  ++ p + p     +g p t p     p
      KOO24143.1 309 EAARWMGKIEASPAQAPARAPEEDEEVSLEGAPETAPaqEVTPKTAPmeaSHEGAPETAPAQEVAP 374
                     45555556799**************98877777654422788888872224567777877766555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (385 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       615  (0.034302); expected 358.6 (0.02)
Passed bias filter:                      346  (0.0192983); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.48u 0.23s 00:00:00.71 Elapsed: 00:00:00.39
# Mc/sec: 2947.15
//
Query:       KOO24144.1  [L=2011]
Description: polyprotein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (2011 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       603  (0.0336327); expected 358.6 (0.02)
Passed bias filter:                      465  (0.0259356); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 1.01u 0.30s 00:00:01.31 Elapsed: 00:00:00.46
# Mc/sec: 13272.61
//
Query:       KOO24145.1  [L=419]
Description: beta-ketoacyl- synthase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.4e-64  216.8  20.1    4.5e-64  216.4  20.1    1.1  1  ELO       GNS1/SUR4 family


Domain annotation for each model (and alignments):
>> ELO  GNS1/SUR4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  216.4  20.1   2.5e-68   4.5e-64       1     247 [.     139     382 ..     139     385 .. 0.93

  Alignments for each domain:
  == domain 1  score: 216.4 bits;  conditional E-value: 2.5e-68
         ELO   1 wllsspkvpiliallYlllvllgpklmknrkpfklkalvilhnlflavlSavgfvgmvkallevlkk....kglvdllckddssdegrlrngllaflvl 95 
                 w+ ++++v++++ ++Yl++++ ++++m++r++f+l+++vi++n+fl+++S++g++++ +++l    +    +g++ ++c     +++++  g+++++v+
  KOO24145.1 139 WTSEHWEVALVAGAFYLVMIVGLKSYMAKREKFRLQNWVICWNFFLSIFSLAGCIACWPKFLVGSDAgllsRGWYPSVC----AHATSYGYGYSGLFVC 233
                 67899*****************************************************75333332357779*******....88999*********** PP

         ELO  96 lfylsKfvEllDTvflvlrkkqvsfLhvYHHatvmllmwaglrfatssgivfivllNsfvHaimYtYYflsalg..akklvvpwkrliTslQilQfvvg 192
                 lf++sK+ El+DT+fl++rk +v++Lh+YHH +v+l++w++++  +++g++f+  +N++vH+imY+Y+ l+  g   +k+++ +++liT+lQ++Q+v+g
  KOO24145.1 234 LFIYSKLAELVDTFFLLVRKSPVILLHWYHHLSVLLYCWHAYSARIGTGLWFA-SMNYGVHSIMYFYFGLTQTGerGRKFAKKFAMLITTLQLTQMVFG 331
                 *****************************************************.*****************99988888999***************** PP

         ELO 193 llaavyllvsytlkkvgCdtsqtpkaairlnllyllslllLFlnffiksylkkkk 247
                 ++++v +++++  + + C++s     +  ++l +++s+++LFl++f ++y+ +kk
  KOO24145.1 332 IAVTVSSVIYHAQG-RVCYVS---LVNSGFGLAMYVSYFFLFLQLFLENYVFNKK 382
                 *9888888886666.99*888...89************************98887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (419 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       733  (0.0408835); expected 358.6 (0.02)
Passed bias filter:                      355  (0.0198003); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.26s 00:00:00.74 Elapsed: 00:00:00.42
# Mc/sec: 3004.07
//
Query:       KOO24146.1  [L=3005]
Description: arm repeat-containing protein containing family protein isoform 1 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   1.7e-216  694.7 154.6    2.3e-08   33.8   0.0   61.5 64  Arm              Armadillo/beta-catenin-like repeat
    7.2e-38  128.6   0.1    1.3e-06   28.3   0.0   17.1 20  Atx10homo_assoc  Spinocerebellar ataxia type 10 protein domai
    6.5e-19   68.4  11.5      0.012   15.1   0.0   14.8 16  Arm_2            Armadillo-like
    1.1e-16   61.1   0.0      0.051   12.8   0.0   11.0 11  V-ATPase_H_N     V-ATPase subunit H
    2.4e-15   56.7 169.3       0.16   12.4   0.3   27.4 33  HEAT_2           HEAT repeats
    3.8e-11   42.9  32.1      0.013   15.0   0.0   13.4 13  DUF5578          Family of unknown function (DUF5578)
    4.2e-11   43.2   7.8         11    6.0   0.1   12.1 14  Cnd1             non-SMC mitotic condensation complex subunit
    3.2e-10   39.2  18.8       0.34    9.4   0.0   11.2 11  Adaptin_N        Adaptin N terminal region
    2.6e-08   34.0   0.8         22    5.2   0.1   10.4 11  V-ATPase_H_C     V-ATPase subunit H
    8.1e-06   26.2 127.2      0.038   14.5   0.7   27.5 33  HEAT_EZ          HEAT-like repeat


Domain annotation for each model (and alignments):
>> Arm  Armadillo/beta-catenin-like repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.5   0.1   5.3e-09   9.5e-06       3      40 ..      56      93 ..      54      94 .. 0.95
   2 !   22.6   0.3   4.4e-08   7.8e-05       5      36 ..     100     131 ..      97     132 .. 0.94
   3 !   10.3   0.0   0.00031      0.56       6      41 .]     142     177 ..     138     177 .. 0.93
   4 !    6.0   0.1    0.0074        13       5      25 ..     184     204 ..     181     208 .. 0.85
   5 !   10.7   0.1   0.00025      0.44       8      39 ..     227     258 ..     220     260 .. 0.80
   6 !    6.9   0.0    0.0037       6.7       2      26 ..     263     287 ..     262     291 .. 0.85
   7 !   13.3   0.0   3.5e-05     0.063       1      37 [.     304     341 ..     304     345 .. 0.91
   8 !   15.9   0.0   5.5e-06    0.0099       8      40 ..     354     387 ..     346     388 .. 0.90
   9 ?    1.6   0.0      0.18   3.3e+02       2      21 ..     390     409 ..     389     415 .. 0.84
  10 ?    3.4   0.0     0.049        88       6      37 ..     473     504 ..     471     504 .. 0.95
  11 !   13.0   0.0   4.6e-05     0.083       8      40 ..     515     547 ..     511     548 .. 0.93
  12 !   17.4   0.0   1.9e-06    0.0034       1      40 [.     550     592 ..     550     593 .. 0.93
  13 !    6.1   0.0    0.0065        12       4      23 ..     597     616 ..     594     623 .. 0.84
  14 !   18.3   0.1   9.6e-07    0.0017       7      36 ..     642     672 ..     636     677 .. 0.90
  15 ?   -0.3   0.0       0.7   1.3e+03      13      40 ..     690     717 ..     681     718 .. 0.81
  16 !   15.6   0.1   6.8e-06     0.012      12      41 .]     725     754 ..     722     754 .. 0.94
  17 !   25.6   0.0   4.7e-09   8.5e-06       1      41 []     756     799 ..     756     799 .. 0.96
  18 ?    1.3   0.0      0.22   3.9e+02       2      17 ..     802     817 ..     801     818 .. 0.90
  19 !   18.6   0.0   7.8e-07    0.0014       1      34 [.     826     859 ..     826     860 .. 0.95
  20 !   13.8   0.0   2.5e-05     0.045       1      29 [.     878     907 ..     878     917 .. 0.86
  21 !    8.0   0.0    0.0017         3      12      33 ..     939     960 ..     933     963 .. 0.85
  22 !   17.6   0.0   1.6e-06    0.0028       6      41 .]     975    1010 ..     971    1010 .. 0.94
  23 ?    0.9   0.0       0.3   5.3e+02       7      22 ..    1017    1032 ..    1012    1037 .. 0.84
  24 !   25.2   0.1   6.5e-09   1.2e-05       7      40 ..    1059    1092 ..    1053    1093 .. 0.92
  25 !   19.6   0.0   3.9e-07    0.0007       4      41 .]    1097    1134 ..    1095    1134 .. 0.94
  26 ?    3.3   0.0      0.05        89       6      25 ..    1180    1200 ..    1177    1201 .. 0.83
  27 !   11.7   0.0   0.00012      0.21       5      40 ..    1263    1298 ..    1259    1299 .. 0.93
  28 !   15.3   0.0   8.8e-06     0.016       3      36 ..    1302    1335 ..    1300    1335 .. 0.93
  29 ?    2.6   0.5     0.084   1.5e+02      29      40 ..    1400    1411 ..    1397    1412 .. 0.90
  30 !    6.4   0.0    0.0053       9.5       2      40 ..    1414    1452 ..    1413    1453 .. 0.91
  31 ?   -0.5   0.1      0.79   1.4e+03      17      40 ..    1466    1489 ..    1458    1490 .. 0.84
  32 !   25.3   0.1   5.8e-09     1e-05       8      40 ..    1499    1531 ..    1493    1532 .. 0.94
  33 ?    4.6   0.0      0.02        36       1      40 [.    1570    1612 ..    1570    1613 .. 0.85
  34 !   17.5   0.1   1.7e-06    0.0031       1      36 [.    1615    1650 ..    1615    1653 .. 0.95
  35 !   14.3   0.2   1.8e-05     0.032       2      41 .]    1658    1697 ..    1657    1697 .. 0.94
  36 !   15.5   0.1   7.2e-06     0.013       1      37 [.    1699    1735 ..    1699    1738 .. 0.91
  37 !    6.0   0.1    0.0071        13      14      40 ..    1754    1781 ..    1753    1782 .. 0.91
  38 ?    4.6   0.0      0.02        36       2      26 ..    1785    1810 ..    1784    1815 .. 0.79
  39 !   15.8   0.4   5.7e-06      0.01       3      37 ..    1829    1863 ..    1827    1866 .. 0.93
  40 ?   -0.3   0.0      0.72   1.3e+03      17      41 .]    1880    1904 ..    1878    1904 .. 0.92
  41 !    7.4   0.0    0.0027       4.8       2      22 ..    1907    1927 ..    1906    1933 .. 0.90
  42 ?   -0.2   0.0      0.66   1.2e+03      25      40 ..    1987    2002 ..    1986    2003 .. 0.87
  43 !   19.4   0.0   4.2e-07   0.00076       4      41 .]    2008    2044 ..    2007    2044 .. 0.94
  44 !   16.0   0.1   5.2e-06    0.0093       4      40 ..    2048    2084 ..    2045    2085 .. 0.94
  45 !   14.7   0.0   1.3e-05     0.023       2      39 ..    2087    2124 ..    2086    2126 .. 0.93
  46 ?    2.7   0.1     0.078   1.4e+02      17      40 ..    2139    2162 ..    2139    2163 .. 0.96
  47 !   17.9   0.0   1.3e-06    0.0023       1      36 [.    2164    2199 ..    2164    2203 .. 0.91
  48 ?    5.5   0.1     0.011        19      16      37 ..    2216    2237 ..    2213    2241 .. 0.90
  49 !    7.8   0.0     0.002       3.5      16      40 ..    2259    2287 ..    2249    2287 .. 0.95
  50 !   12.8   0.2   5.1e-05     0.092       2      37 ..    2289    2326 ..    2288    2329 .. 0.91
  51 !   13.1   0.0   4.2e-05     0.075       4      40 ..    2334    2370 ..    2333    2371 .. 0.94
  52 ?   -2.5   0.0       3.4   6.1e+03      10      18 ..    2381    2389 ..    2378    2394 .. 0.87
  53 ?   -0.2   0.0      0.64   1.2e+03       6      20 ..    2419    2433 ..    2414    2438 .. 0.83
  54 ?   -1.4   0.0       1.5   2.7e+03       8      29 ..    2479    2501 ..    2475    2504 .. 0.76
  55 !   20.3   0.2   2.3e-07   0.00042       5      41 .]    2517    2553 ..    2513    2553 .. 0.87
  56 !   19.9   0.1   3.1e-07   0.00055      12      41 .]    2566    2595 ..    2557    2595 .. 0.89
  57 ?   -1.3   0.3       1.4   2.6e+03      16      41 .]    2607    2632 ..    2607    2632 .. 0.92
  58 !    8.2   0.0    0.0015       2.7       1      23 [.    2634    2659 ..    2634    2678 .. 0.80
  59 !   33.8   0.0   1.3e-11   2.3e-08       2      40 ..    2680    2718 ..    2679    2719 .. 0.96
  60 !   20.5   0.0     2e-07   0.00036       3      41 .]    2722    2760 ..    2721    2760 .. 0.94
  61 !   19.9   0.0   3.1e-07   0.00055       3      39 ..    2763    2799 ..    2761    2801 .. 0.93
  62 !   29.4   0.1     3e-10   5.5e-07       4      40 ..    2806    2842 ..    2804    2843 .. 0.96
  63 !   11.8   0.0   0.00011      0.19       7      41 .]    2852    2886 ..    2850    2886 .. 0.96
  64 ?    3.3   0.0     0.051        92       1      24 [.    2887    2910 ..    2887    2912 .. 0.90

  Alignments for each domain:
  == domain 1  score: 25.5 bits;  conditional E-value: 5.3e-09
                HHHHHHHHTTHHHHHHHHTTTSSHHHHHHHHHHHHHHT CS
         Arm  3 enkdavieaGavppLvrLLssedeevqeeAawALsNLa 40
                e+ da++ +Gav pLvr Lss++++ q+ A++ALs +a
  KOO24146.1 56 EHADALVTCGAVGPLVRVLSSGSTDAQTSACSALSEIA 93
                7899*******************************997 PP

  == domain 2  score: 22.6 bits;  conditional E-value: 4.4e-08
                 HHHHHHTTHHHHHHHHTTTSSHHHHHHHHHHH CS
         Arm   5 kdavieaGavppLvrLLssedeevqeeAawAL 36 
                   a++eaGa+ pLv+LL++++ + qe+Aa+AL
  KOO24146.1 100 QAAIVEAGALLPLVKLLKTGSSKAQEQAASAL 131
                 579****************************9 PP

  == domain 3  score: 10.3 bits;  conditional E-value: 0.00031
                 HHHHHTTHHHHHHHHTTTSSHHHHHHHHHHHHHHTT CS
         Arm   6 davieaGavppLvrLLssedeevqeeAawALsNLaa 41 
                 +++ +aG++ pLv++++ +++  q  Aa  L+N+a+
  KOO24146.1 142 RMLTDAGCITPLVAMIKGGSVVAQASAAKGLANIAS 177
                 67889*****************************96 PP

  == domain 4  score: 6.0 bits;  conditional E-value: 0.0074
                 HHHHHHTTHHHHHHHHTTTSS CS
         Arm   5 kdavieaGavppLvrLLssed 25 
                  da+  aGa++ L++LLs ++
  KOO24146.1 184 QDAIAAAGAIQLLLNLLSVGK 204
                 68999************9665 PP

  == domain 5  score: 10.7 bits;  conditional E-value: 0.00025
                 HHHTTHHHHHHHHTTTSSHHHHHHHHHHHHHH CS
         Arm   8 vieaGavppLvrLLssedeevqeeAawALsNL 39 
                 +  aG++ pL++LL+  +++ q  Aa+A++ +
  KOO24146.1 227 ISAAGGIAPLLSLLNGVNTDAQVKAAAAIAEM 258
                 4479***********88888888888888766 PP

  == domain 6  score: 6.9 bits;  conditional E-value: 0.0037
                 HHHHHHHHHTTHHHHHHHHTTTSSH CS
         Arm   2 senkdavieaGavppLvrLLssede 26 
                  e  d v +aG++ pL++L  s ++
  KOO24146.1 263 KEVQDSVAKAGGISPLLSLVASRSP 287
                 6778999*************98876 PP

  == domain 7  score: 13.3 bits;  conditional E-value: 3.5e-05
                 SHHHHHHHHHTTHHHHHHHHTT.TSSHHHHHHHHHHHH CS
         Arm   1 nsenkdavieaGavppLvrLLs.sedeevqeeAawALs 37 
                 n en d + ++G+v++ +  L  s +++vq++Aa AL+
  KOO24146.1 304 NRENQDFIARLGGVKIIIPHLGlSSSPDVQTQAAFALA 341
                 679******************************97776 PP

  == domain 8  score: 15.9 bits;  conditional E-value: 5.5e-06
                 HHHTTHHHHHHHHTT.TSSHHHHHHHHHHHHHHT CS
         Arm   8 vieaGavppLvrLLs.sedeevqeeAawALsNLa 40 
                 ++++G++ +L  L++ s++ ev+  +a+AL+ ++
  KOO24146.1 354 IVDHGGISQLAGLIKnSQHAEVKSHVAGALWSMS 387
                 67*****************************876 PP

  == domain 9  score: 1.6 bits;  conditional E-value: 0.18
                 HHHHHHHHHTTHHHHHHHHT CS
         Arm   2 senkdavieaGavppLvrLL 21 
                 ++ k+ +  a a++pLv+LL
  KOO24146.1 390 PKIKISIAGASAIQPLVELL 409
                 56677888999********9 PP

  == domain 10  score: 3.4 bits;  conditional E-value: 0.049
                 HHHHHTTHHHHHHHHTTTSSHHHHHHHHHHHH CS
         Arm   6 davieaGavppLvrLLssedeevqeeAawALs 37 
                 +++ +aG  +p v+LL+ + +e +  A+w Ls
  KOO24146.1 473 QTIADAGEPEPVVDLLKAGIPEAKDYALWSLS 504
                 68999************************997 PP

  == domain 11  score: 13.0 bits;  conditional E-value: 4.6e-05
                 HHHTTHHHHHHHHTTTSSHHHHHHHHHHHHHHT CS
         Arm   8 vieaGavppLvrLLssedeevqeeAawALsNLa 40 
                 v +aG+v pL++ L++  ++ +eeAa+AL+ La
  KOO24146.1 515 VASAGGVTPLIKQLDDYRVRNREEAAAALAKLA 547
                 789**************************9887 PP

  == domain 12  score: 17.4 bits;  conditional E-value: 1.9e-06
                 SHHHHHHHHHTTHHHHHHHHTT...TSSHHHHHHHHHHHHHHT CS
         Arm   1 nsenkdavieaGavppLvrLLs...sedeevqeeAawALsNLa 40 
                 n++ + ++ + G+++pL+r L    s +e v+++Aa+AL+ La
  KOO24146.1 550 NDDTRSQITKEGGIKPLIRQLVpgpSSSELVRQNAAAALADLA 592
                 677899999******************************9776 PP

  == domain 13  score: 6.1 bits;  conditional E-value: 0.0065
                 HHHHHHHTTHHHHHHHHTTT CS
         Arm   4 nkdavieaGavppLvrLLss 23 
                  +d+++ +G+++pLv LL++
  KOO24146.1 597 ARDEIVGMGGIRPLVLLLED 616
                 589***************84 PP

  == domain 14  score: 18.3 bits;  conditional E-value: 9.6e-07
                 HHHHTTHHHHHHHHTT.TSSHHHHHHHHHHH CS
         Arm   7 avieaGavppLvrLLs.sedeevqeeAawAL 36 
                 a+ eaGa+ pLv+LL+  e  e qeeAa+AL
  KOO24146.1 642 AIAEAGAIAPLVALLDgKEGLEAQEEAAGAL 672
                 677***************************9 PP

  == domain 15  score: -0.3 bits;  conditional E-value: 0.7
                 HHHHHHHHTTTSSHHHHHHHHHHHHHHT CS
         Arm  13 avppLvrLLssedeevqeeAawALsNLa 40 
                 ++  Lv LL +++++ +e A +AL  L+
  KOO24146.1 690 GIGWLVMLLGCPNPRSREHAEGALVRLS 717
                 55559*************9988887665 PP

  == domain 16  score: 15.6 bits;  conditional E-value: 6.8e-06
                 THHHHHHHHTTTSSHHHHHHHHHHHHHHTT CS
         Arm  12 GavppLvrLLssedeevqeeAawALsNLaa 41 
                  +++ Lv++L++     qe+Aa+AL+NLa+
  KOO24146.1 725 QIIKKLVDMLQDSGNAAQEQAAAALANLAR 754
                 5899************************97 PP

  == domain 17  score: 25.6 bits;  conditional E-value: 4.7e-09
                 SHHHHHHHHHTTHHHHHHHHTT...TSSHHHHHHHHHHHHHHTT CS
         Arm   1 nsenkdavieaGavppLvrLLs...sedeevqeeAawALsNLaa 41 
                 +++n++++++a+++ pL++LL+   + +++ +e+A++AL  L++
  KOO24146.1 756 SEDNRKTIVDANGIVPLLALLDadrHSSPKAKENAVGALKQLCR 799
                 578***************************************97 PP

  == domain 18  score: 1.3 bits;  conditional E-value: 0.22
                 HHHHHHHHHTTHHHHH CS
         Arm   2 senkdavieaGavppL 17 
                  en  ++ +aG++p L
  KOO24146.1 802 KENQSQIARAGGIPKL 817
                 799***********98 PP

  == domain 19  score: 18.6 bits;  conditional E-value: 7.8e-07
                 SHHHHHHHHHTTHHHHHHHHTTTSSHHHHHHHHH CS
         Arm   1 nsenkdavieaGavppLvrLLssedeevqeeAaw 34 
                 n +n +a+   Ga+ pLv++L s++ ++q +Aa+
  KOO24146.1 826 NKKNQEAIAAEGAIAPLVAMLGSPSAQMQANAAG 859
                 57899***************************97 PP

  == domain 20  score: 13.8 bits;  conditional E-value: 2.5e-05
                 SHHHHHHHHHTTHHHHHHHHTT.TSSHHHH CS
         Arm   1 nsenkdavieaGavppLvrLLs.sedeevq 29 
                 n +nkd++ ++G+++pLv LL  s++e+ q
  KOO24146.1 878 NAPNKDTIAKLGGIDPLVGLLItSDSEKSQ 907
                 679******************987776655 PP

  == domain 21  score: 8.0 bits;  conditional E-value: 0.0017
                 THHHHHHHHTTTSSHHHHHHHH CS
         Arm  12 GavppLvrLLssedeevqeeAa 33 
                 G++ppL+++L+  + +vq  Aa
  KOO24146.1 939 GGIPPLIQCLQAASGKVQAYAA 960
                 9**********99988888887 PP

  == domain 22  score: 17.6 bits;  conditional E-value: 1.6e-06
                  HHHHHTTHHHHHHHHTTTSSHHHHHHHHHHHHHHTT CS
         Arm    6 davieaGavppLvrLLssedeevqeeAawALsNLaa 41  
                  +++ ++ a+ppLv+L++   +  qe A++A+++La+
  KOO24146.1  975 QLIAKSDAIPPLVALMKRSTPAAQEHATRAIWHLAS 1010
                  7788******************************96 PP

  == domain 23  score: 0.9 bits;  conditional E-value: 0.3
                  HHHHTTHHHHHHHHTT CS
         Arm    7 avieaGavppLvrLLs 22  
                  +++eaG+ +p v++L 
  KOO24146.1 1017 LIVEAGCFKPMVSMLA 1032
                  89************97 PP

  == domain 24  score: 25.2 bits;  conditional E-value: 6.5e-09
                  HHHHTTHHHHHHHHTTTSSHHHHHHHHHHHHHHT CS
         Arm    7 avieaGavppLvrLLssedeevqeeAawALsNLa 40  
                   + e G+++pLv+LLs+ +++ q++Aa+AL+ +a
  KOO24146.1 1059 DIAETGGIKPLVKLLSHASPGAQKQAASALAEIA 1092
                  57899*************************9987 PP

  == domain 25  score: 19.6 bits;  conditional E-value: 3.9e-07
                  HHHHHHHTTHHHHHHHHTTTSSHHHHHHHHHHHHHHTT CS
         Arm    4 nkdavieaGavppLvrLLssedeevqeeAawALsNLaa 41  
                   +d++ +aG+++pLv+L++s  +++ e Aa+A++++++
  KOO24146.1 1097 TRDVIASAGGIEPLVHLMDSSTVGTPETAARAIAHISR 1134
                  589999******************************96 PP

  == domain 26  score: 3.3 bits;  conditional E-value: 0.05
                  HHHH.HTTHHHHHHHHTTTSS CS
         Arm    6 davi.eaGavppLvrLLssed 25  
                  +avi   G++++L++LL+s +
  KOO24146.1 1180 RAVIhTVGGLQRLIALLDSSN 1200
                  5677778***********876 PP

  == domain 27  score: 11.7 bits;  conditional E-value: 0.00012
                  HHHHHHTTHHHHHHHHTTTSSHHHHHHHHHHHHHHT CS
         Arm    5 kdavieaGavppLvrLLssedeevqeeAawALsNLa 40  
                   d++i  G++ppL+++++s+ +  qe  a+A+++La
  KOO24146.1 1263 QDLIIGDGGIPPLLAFIRSGTPLGQEHGARAIWHLA 1298
                  689******************************998 PP

  == domain 28  score: 15.3 bits;  conditional E-value: 8.8e-06
                  HHHHHHHHTTHHHHHHHHTTTSSHHHHHHHHHHH CS
         Arm    3 enkdavieaGavppLvrLLssedeevqeeAawAL 36  
                   n +a+i++Ga+p Lv L +s++++ qe Aa+ L
  KOO24146.1 1302 SNQMALINCGAIPDLVMLVKSGSPKAQEYAAAGL 1335
                  6899**************************9876 PP

  == domain 29  score: 2.6 bits;  conditional E-value: 0.084
                  HHHHHHHHHHHT CS
         Arm   29 qeeAawALsNLa 40  
                  +e+A++AL++La
  KOO24146.1 1400 RENATGALWHLA 1411
                  79*********8 PP

  == domain 30  score: 6.4 bits;  conditional E-value: 0.0053
                  HHHHHHHHHTTHHHHHHHHTTTSSHHHHHHHHHHHHHHT CS
         Arm    2 senkdavieaGavppLvrLLssedeevqeeAawALsNLa 40  
                   +n +++ + ++vp Lv+ L+++ ++    Aa AL+ La
  KOO24146.1 1414 TGNQMQIAKFNGVPSLVTVLDDGTPKAHSLAADALARLA 1452
                  578999********************9999999999887 PP

  == domain 31  score: -0.5 bits;  conditional E-value: 0.79
                  HHHHTTTSSHHHHHHHHHHHHHHT CS
         Arm   17 LvrLLssedeevqeeAawALsNLa 40  
                  Lv LL +++ + q+ Aa A++ La
  KOO24146.1 1466 LVGLLGNQSAGAQRRAAHAVCDLA 1489
                  99**************98877666 PP

  == domain 32  score: 25.3 bits;  conditional E-value: 5.8e-09
                  HHHTTHHHHHHHHTTTSSHHHHHHHHHHHHHHT CS
         Arm    8 vieaGavppLvrLLssedeevqeeAawALsNLa 40  
                  +++aGa+ pLv+LLs++  ev++eAa ALs L+
  KOO24146.1 1499 IVNAGAISPLVNLLSNGVLEVKKEAAKALSTLS 1531
                  89****************************886 PP

  == domain 33  score: 4.6 bits;  conditional E-value: 0.02
                  SHHHHHHHHHTTHHHHHHHHTT...TSSHHHHHHHHHHHHHHT CS
         Arm    1 nsenkdavieaGavppLvrLLs...sedeevqeeAawALsNLa 40  
                  ++ n+ a+ +aGa+ +Lv  L+    ++ + qe +a+ L+ L+
  KOO24146.1 1570 DDVNRFAISKAGAISRLVIQLRggaQTSMKAQEISAAVLARLS 1612
                  578999***************9988888888888888887765 PP

  == domain 34  score: 17.5 bits;  conditional E-value: 1.7e-06
                  SHHHHHHHHHTTHHHHHHHHTTTSSHHHHHHHHHHH CS
         Arm    1 nsenkdavieaGavppLvrLLssedeevqeeAawAL 36  
                  ++en  a+  a +++pLv+LL+s++++ q  Aa+ L
  KOO24146.1 1615 SDENVAAISAASGIRPLVALLTSDSTSGQAHAATVL 1650
                  689******************************998 PP

  == domain 35  score: 14.3 bits;  conditional E-value: 1.8e-05
                  HHHHHHHHHTTHHHHHHHHTTTSSHHHHHHHHHHHHHHTT CS
         Arm    2 senkdavieaGavppLvrLLssedeevqeeAawALsNLaa 41  
                   +n+ ++ +  av pL++LL+ + ++ + eAa+AL  L+a
  KOO24146.1 1658 KRNRNVILNESAVAPLIALLTQGTQDAKAEAAGALHSLSA 1697
                  579999*****************************99986 PP

  == domain 36  score: 15.5 bits;  conditional E-value: 7.2e-06
                  SHHHHHHHHHTTHHHHHHHHTTTSSHHHHHHHHHHHH CS
         Arm    1 nsenkdavieaGavppLvrLLssedeevqeeAawALs 37  
                  n+e  +++ eaGa++pLv+LL  ++   ++ Aa+A++
  KOO24146.1 1699 NPETQKLIAEAGAIKPLVALLGEDHNLARKKAAGAIA 1735
                  678889999*************************986 PP

  == domain 37  score: 6.0 bits;  conditional E-value: 0.0071
                  HHHHHHHTT.TSSHHHHHHHHHHHHHHT CS
         Arm   14 vppLvrLLs.sedeevqeeAawALsNLa 40  
                  +  Lv LL  s ++ev+ eAa+AL+ La
  KOO24146.1 1754 IGKLVGLLGaSISDEVRAEAAAALAVLA 1781
                  778*********************9876 PP

  == domain 38  score: 4.6 bits;  conditional E-value: 0.02
                  HHHHHHHHHTTHHHHHHHHTT.TSSH CS
         Arm    2 senkdavieaGavppLvrLLs.sede 26  
                   +n d +   G++ pLv LL+ +++e
  KOO24146.1 1785 RKNQDKLAADGGIAPLVGLLKeDTSE 1810
                  6789999999***********65444 PP

  == domain 39  score: 15.8 bits;  conditional E-value: 5.7e-06
                  HHHHHHHHTTHHHHHHHHTTTSSHHHHHHHHHHHH CS
         Arm    3 enkdavieaGavppLvrLLssedeevqeeAawALs 37  
                  en  av +aG++ pLv++L   +++ qe++a+AL+
  KOO24146.1 1829 ENQVAVAQAGGIAPLVACLGLASTRAQEQSAGALA 1863
                  8999*****************************96 PP

  == domain 40  score: -0.3 bits;  conditional E-value: 0.72
                  HHHHTTTSSHHHHHHHHHHHHHHTT CS
         Arm   17 LvrLLssedeevqeeAawALsNLaa 41  
                   v+LL s+d ++   Aa+ +s La+
  KOO24146.1 1880 IVELLGSTDKQTSAKAARGISRLAR 1904
                  589******************9996 PP

  == domain 41  score: 7.4 bits;  conditional E-value: 0.0027
                  HHHHHHHHHTTHHHHHHHHTT CS
         Arm    2 senkdavieaGavppLvrLLs 22  
                  + n da+  aG+++ Lv+LL+
  KOO24146.1 1907 PSNQDAIAVAGGIQLLVSLLD 1927
                  6799***************97 PP

  == domain 42  score: -0.2 bits;  conditional E-value: 0.66
                  SHHHHHHHHHHHHHHT CS
         Arm   25 deevqeeAawALsNLa 40  
                  + +vq+e a+A++ +a
  KOO24146.1 1987 SAKVQKEMASAIWSMA 2002
                  689**********887 PP

  == domain 43  score: 19.4 bits;  conditional E-value: 4.2e-07
                  HHHHHHHTTHHHHHHHHTTTSSHHHHHHHHHHHHHHTT CS
         Arm    4 nkdavieaGavppLvrLLssedeevqeeAawALsNLaa 41  
                  n +++ e G++p L++LL+ +++ev +++a+ALs La+
  KOO24146.1 2008 NQIVIAETGGIPLLIALLK-GHPEVHRDVAGALSSLAS 2044
                  778899*************.***************996 PP

  == domain 44  score: 16.0 bits;  conditional E-value: 5.2e-06
                  HHHHHHHTTHHHHHHHHTTTSSHHHHHHHHHHHHHHT CS
         Arm    4 nkdavieaGavppLvrLLssedeevqeeAawALsNLa 40  
                  n +a+ +aG++ pLv LLs+ + e qe +a+AL  La
  KOO24146.1 2048 NQIAIAHAGGIVPLVGLLSTASREAQETVAAALHSLA 2084
                  7899*****************************9987 PP

  == domain 45  score: 14.7 bits;  conditional E-value: 1.3e-05
                  HHHHHHHHHTTHHHHHHHHTTTSSHHHHHHHHHHHHHH CS
         Arm    2 senkdavieaGavppLvrLLssedeevqeeAawALsNL 39  
                  s n+ a+ +aG++ pLv+L + + ++ + +Aa+AL+ L
  KOO24146.1 2087 SANRVAIASAGGITPLVDLFDGGTDDAKAQAAGALQTL 2124
                  789********************************866 PP

  == domain 46  score: 2.7 bits;  conditional E-value: 0.078
                  HHHHTTTSSHHHHHHHHHHHHHHT CS
         Arm   17 LvrLLssedeevqeeAawALsNLa 40  
                  LvrL+++++   qe ++  L+NLa
  KOO24146.1 2139 LVRLIKTGSALAQEHVTELLRNLA 2162
                  9**********************9 PP

  == domain 47  score: 17.9 bits;  conditional E-value: 1.3e-06
                  SHHHHHHHHHTTHHHHHHHHTTTSSHHHHHHHHHHH CS
         Arm    1 nsenkdavieaGavppLvrLLssedeevqeeAawAL 36  
                  n++n+ a+ +aGa+p Lvr L+s++e+  e Aa+ L
  KOO24146.1 2164 NPDNRGAIAKAGAIPELVRQLESGSEKSMEMAAAGL 2199
                  799***********************9999999877 PP

  == domain 48  score: 5.5 bits;  conditional E-value: 0.011
                  HHHHHTTTSSHHHHHHHHHHHH CS
         Arm   16 pLvrLLssedeevqeeAawALs 37  
                   Lv+LL se e+v++ A  AL+
  KOO24146.1 2216 ELVKLLASEAESVRQRASEALR 2237
                  69***************99998 PP

  == domain 49  score: 7.8 bits;  conditional E-value: 0.002
                  HHHHHTT....TSSHHHHHHHHHHHHHHT CS
         Arm   16 pLvrLLs....sedeevqeeAawALsNLa 40  
                  pLv+LL+    ++ +e qe A+w Ls ++
  KOO24146.1 2259 PLVNLLKdglkDGRVEAQEYALWSLSSIT 2287
                  9*************************886 PP

  == domain 50  score: 12.8 bits;  conditional E-value: 5.1e-05
                  HHHHHHHHHTTHHHHHHHHTT..TSSHHHHHHHHHHHH CS
         Arm    2 senkdavieaGavppLvrLLs..sedeevqeeAawALs 37  
                  +  k+av++aG+++pL++ L     +++ qe Aa+ Ls
  KOO24146.1 2289 QAAKEAVVQAGGIKPLIAALVggKISPTAQEHAAAVLS 2326
                  56799****************999999****9999997 PP

  == domain 51  score: 13.1 bits;  conditional E-value: 4.2e-05
                  HHHHHHHTTHHHHHHHHTTTSSHHHHHHHHHHHHHHT CS
         Arm    4 nkdavieaGavppLvrLLssedeevqeeAawALsNLa 40  
                  n +a++++ +++pLvrLL  + ++ +  Aa AL+ La
  KOO24146.1 2334 NAEAIRKMKGIEPLVRLLLEGTPDAKVHAADALAQLA 2370
                  6789*****************************9987 PP

  == domain 52  score: -2.5 bits;  conditional E-value: 3.4
                  HTTHHHHHH CS
         Arm   10 eaGavppLv 18  
                  +aGa+p++v
  KOO24146.1 2381 RAGAIPAFV 2389
                  89*****98 PP

  == domain 53  score: -0.2 bits;  conditional E-value: 0.64
                  HHHHHTTHHHHHHHH CS
         Arm    6 davieaGavppLvrL 20  
                   ++ e Ga+ pL+++
  KOO24146.1 2419 SQIAEEGAIAPLISM 2433
                  6799*********97 PP

  == domain 54  score: -1.4 bits;  conditional E-value: 1.5
                  HHHTTHHHHHHHHTT.TSSHHHH CS
         Arm    8 vieaGavppLvrLLs.sedeevq 29  
                  + e  ++ pLv+LL+   + ++q
  KOO24146.1 2479 ITEEDGIVPLVELLKrKAHITYQ 2501
                  55788999******977666665 PP

  == domain 55  score: 20.3 bits;  conditional E-value: 2.3e-07
                  HHHHHHTTHHHHHHHHTTTSSHHHHHHHHHHHHHHTT CS
         Arm    5 kdavieaGavppLvrLLssedeevqeeAawALsNLaa 41  
                    a+  aG++ppLv+LLs+ +e +q+ Aa+A+  La+
  KOO24146.1 2517 QTAIALAGGLPPLVELLSDANEITQQYAAAAIESLAR 2553
                  5555559*************************99986 PP

  == domain 56  score: 19.9 bits;  conditional E-value: 3.1e-07
                  THHHHHHHHTTTSSHHHHHHHHHHHHHHTT CS
         Arm   12 GavppLvrLLssedeevqeeAawALsNLaa 41  
                  Ga+ pLv+LL ++++ +qe A++AL N+a+
  KOO24146.1 2566 GAIIPLVALLGTDSVATQEHAVGALLNIAS 2595
                  99**************************96 PP

  == domain 57  score: -1.3 bits;  conditional E-value: 1.4
                  HHHHHTTTSSHHHHHHHHHHHHHHTT CS
         Arm   16 pLvrLLssedeevqeeAawALsNLaa 41  
                  +Lv+ L++ + + q  +a AL+ La+
  KOO24146.1 2607 HLVEVLDTRNASAQMKSAVALAVLAS 2632
                  69*******************99885 PP

  == domain 58  score: 8.2 bits;  conditional E-value: 0.0015
                  SHHHHHHHHHTTHHHHHHHHTT...T CS
         Arm    1 nsenkdavieaGavppLvrLLs...s 23  
                  n +n+ a+  +Ga++pL+rL+    s
  KOO24146.1 2634 NADNRTAITAHGAIQPLIRLMGdgkS 2659
                  67899****************95333 PP

  == domain 59  score: 33.8 bits;  conditional E-value: 1.3e-11
                  HHHHHHHHHTTHHHHHHHHTTTSSHHHHHHHHHHHHHHT CS
         Arm    2 senkdavieaGavppLvrLLssedeevqeeAawALsNLa 40  
                   enk++++   +vppLv++Ls++++e q+ Aa+AL++La
  KOO24146.1 2680 AENKETIVAEKGVPPLVAMLSCPSPEAQTHAAGALWHLA 2718
                  59************************************8 PP

  == domain 60  score: 20.5 bits;  conditional E-value: 2e-07
                  HHHHHHHHTTHHHHHHHHTTTSSHHHHHHHHHHHHHHTT CS
         Arm    3 enkdavieaGavppLvrLLssedeevqeeAawALsNLaa 41  
                  +n+  +  aG+++pLv+LL s+ e+ q  +a+AL +La+
  KOO24146.1 2722 KNRTIIAGAGGIEPLVALLGSPMENAQMYSAGALFHLAS 2760
                  6888899*****************************996 PP

  == domain 61  score: 19.9 bits;  conditional E-value: 3.1e-07
                  HHHHHHHHTTHHHHHHHHTTTSSHHHHHHHHHHHHHH CS
         Arm    3 enkdavieaGavppLvrLLssedeevqeeAawALsNL 39  
                  +n+ a ++aGa+p Lv+L++s+ ++++e Aa+ Ls L
  KOO24146.1 2763 DNRVATVKAGAIPSLVTLIHSKLPDTREHAASVLSAL 2799
                  6999******************************955 PP

  == domain 62  score: 29.4 bits;  conditional E-value: 3e-10
                  HHHHHHHTTHHHHHHHHTTTSSHHHHHHHHHHHHHHT CS
         Arm    4 nkdavieaGavppLvrLLssedeevqeeAawALsNLa 40  
                  nk+++++aG++p+L++LLs++ + +q+ Aa+ L+ L+
  KOO24146.1 2806 NKKMIVQAGGIPALIALLSDTRVLTQRHAACSLWGLT 2842
                  89********************************887 PP

  == domain 63  score: 11.8 bits;  conditional E-value: 0.00011
                  HHHHTTHHHHHHHHTTTSSHHHHHHHHHHHHHHTT CS
         Arm    7 avieaGavppLvrLLssedeevqeeAawALsNLaa 41  
                  ++ie+ ++ppL++ L+ ++++++  Aa++L+NL++
  KOO24146.1 2852 QIIEYIGLPPLLHALQRGNDQTCGFAAACLTNLCR 2886
                  799*******************************7 PP

  == domain 64  score: 3.3 bits;  conditional E-value: 0.051
                  SHHHHHHHHHTTHHHHHHHHTTTS CS
         Arm    1 nsenkdavieaGavppLvrLLsse 24  
                  +++ k+++ie+Ga ++L++L +s+
  KOO24146.1 2887 DPDAKRTMIELGASDALLELARSP 2910
                  57889***************9998 PP

>> Atx10homo_assoc  Spinocerebellar ataxia type 10 protein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.0       3.1   5.5e+03      13      35 ..     177     199 ..     171     206 .. 0.82
   2 ?    2.0   0.0      0.12   2.1e+02       8      36 ..     212     240 ..     208     254 .. 0.86
   3 !   28.3   0.0   7.3e-10   1.3e-06       7      72 ..     253     316 ..     247     328 .. 0.91
   4 !    5.6   0.0    0.0089        16       5      60 ..     539     595 ..     535     604 .. 0.78
   5 !   25.0   0.1   7.8e-09   1.4e-05       7      69 ..     747     810 ..     742     812 .. 0.93
   6 ?    2.5   0.0     0.081   1.5e+02      51      68 ..     817     834 ..     814     841 .. 0.91
   7 ?   -3.4   0.0       5.5     1e+04      49      70 ..     867     888 ..     863     892 .. 0.78
   8 ?    2.5   0.0     0.081   1.4e+02      12      64 ..     966    1015 ..     934    1022 .. 0.77
   9 !   11.4   0.0   0.00014      0.25       8      67 ..    1251    1308 ..    1244    1311 .. 0.88
  10 ?    0.7   0.0      0.29   5.2e+02      19      69 ..    1416    1464 ..    1410    1467 .. 0.88
  11 ?    2.4   0.0      0.09   1.6e+02       9      69 ..    1692    1750 ..    1649    1756 .. 0.71
  12 !   13.4   0.0   3.2e-05     0.058       2      69 ..    1770    1836 ..    1769    1842 .. 0.90
  13 ?   -1.3   0.0       1.3   2.3e+03       9      35 ..    1899    1925 ..    1894    1930 .. 0.85
  14 ?   -2.4   0.0       2.8     5e+03      46      69 ..    2114    2137 ..    2092    2169 .. 0.81
  15 ?    2.0   0.0      0.12   2.2e+02      13      70 ..    2285    2341 ..    2279    2353 .. 0.80
  16 ?   -1.8   0.0       1.8   3.3e+03       7      35 ..    2405    2433 ..    2403    2436 .. 0.86
  17 ?    3.1   0.0     0.054        97      16      66 ..    2513    2561 ..    2507    2565 .. 0.85
  18 ?   -2.1   0.0       2.3   4.1e+03      38      68 ..    2612    2642 ..    2598    2649 .. 0.87
  19 ?   -1.8   0.0       1.9   3.3e+03       2      33 ..    2789    2820 ..    2788    2827 .. 0.87
  20 ?   -1.3   0.0       1.2   2.2e+03      22      67 ..    2852    2895 ..    2849    2899 .. 0.77

  Alignments for each domain:
  == domain 1  score: -2.5 bits;  conditional E-value: 3.1
  Atx10homo_assoc  13 vyknkevqdkvreldgleliLsq 35 
                      ++++ + qd + + ++++l+L+ 
       KOO24146.1 177 SFDKVAGQDAIAAAGAIQLLLNL 199
                      6788899**************86 PP

  == domain 2  score: 2.0 bits;  conditional E-value: 0.12
  Atx10homo_assoc   8 llgnlvyknkevqdkvreldgleliLsqc 36 
                       l++l+ kn+++q ++ + +g++ +Ls  
       KOO24146.1 212 ALAQLARKNPAIQTEISAAGGIAPLLSLL 240
                      68999******************999865 PP

  == domain 3  score: 28.3 bits;  conditional E-value: 7.3e-10
  Atx10homo_assoc   7 rllgnlvyknkevqdkvreldgleliLsqcniDdnnPfirewailairnLlegneenqelvaeLea 72 
                      + ++ ++++nkevqd v + +g++ +Ls +   ++ P  + +++ a+ +L ++n+enq+++a+L  
       KOO24146.1 253 AAIAEMSWHNKEVQDSVAKAGGISPLLSLV--ASRSPAAQARGMGALAQLAHDNRENQDFIARLGG 316
                      5799***********************976..5799**************************9965 PP

  == domain 4  score: 5.6 bits;  conditional E-value: 0.0089
  Atx10homo_assoc   5 lvrllgnlvyknkevqdkvreldgleliLsqcn.iDdnnPfirewailairnLlegn 60 
                        + l+ l+++n ++++++ +++g++ ++ q +   ++  ++r+ a  a+  L  ++
       KOO24146.1 539 AAAALAKLAHNNDDTRSQITKEGGIKPLIRQLVpGPSSSELVRQNAAAALADLAVDT 595
                      56789**********************999965155677788888888877776555 PP

  == domain 5  score: 25.0 bits;  conditional E-value: 7.8e-09
  Atx10homo_assoc   7 rllgnlvyknkevqdkvreldgleliLsqcniDdn.nPfirewailairnLlegneenqelvae 69 
                      + l+nl+ +++++++++++ +g+  +L     D++  P  +e a+ a+++L+  ++enq+ +a+
       KOO24146.1 747 AALANLARESEDNRKTIVDANGIVPLLALLDADRHsSPKAKENAVGALKQLCRRSKENQSQIAR 810
                      579******************************97369**********************9985 PP

  == domain 6  score: 2.5 bits;  conditional E-value: 0.081
  Atx10homo_assoc  51 lairnLlegneenqelva 68 
                      la++ + +gn++nqe +a
       KOO24146.1 817 LAVKEMAKGNKKNQEAIA 834
                      699*************98 PP

  == domain 7  score: -3.4 bits;  conditional E-value: 5.5
  Atx10homo_assoc  49 ailairnLlegneenqelvaeL 70 
                      +  a+  L  +n+ n++ +a+L
       KOO24146.1 867 SASALWALSTDNAPNKDTIAKL 888
                      5567778889999999999988 PP

  == domain 8  score: 2.5 bits;  conditional E-value: 0.081
  Atx10homo_assoc   12 lvyknkevqdkvreldgleliLsqcniDdnnPfirewailairnLlegneenq 64  
                       l+ +n+++q+ + + d+++ +   +   ++ P  +e+a+ ai +L  + een+
       KOO24146.1  966 LAQNNTTTQQLIAKSDAIPPLVALM--KRSTPAAQEHATRAIWHLASQ-EENH 1015
                       5667888899999999999888765..467899999999999888655.4444 PP

  == domain 9  score: 11.4 bits;  conditional E-value: 0.00014
  Atx10homo_assoc    8 llgnlvyknkevqdkvreldgleliLsqcniDdnnPfirewailairnLlegneenqelv 67  
                        l+ ++++n ++qd +   +g++ +L    i +  P+ +e++  ai +L e+n++  +l+
       KOO24146.1 1251 ALADIAHDNFNMQDLIIGDGGIPPLLAF--IRSGTPLGQEHGARAIWHLAEQNSNQMALI 1308
                       68999*********************86..56789******************8765555 PP

  == domain 10  score: 0.7 bits;  conditional E-value: 0.29
  Atx10homo_assoc   19 vqdkvreldgleliLsqcniDdnnPfirewailairnLlegneenqelvae 69  
                       +q ++ + +g++ +   +++Dd  P  +  a  a+  L  +++enq+ +a+
       KOO24146.1 1416 NQMQIAKFNGVPSLV--TVLDDGTPKAHSLAADALARLAIDSAENQAQIAK 1464
                       778888888888875..689***************************9986 PP

  == domain 11  score: 2.4 bits;  conditional E-value: 0.09
  Atx10homo_assoc    9 lgnlvyknkevqdkvreldgleliLsqcniDdnnPfirewailairnLlegneenqelvae 69  
                       l +l+  n+e+q+ + e ++++ +       +++ + r+ a  ai  L  +  +nq+ v++
       KOO24146.1 1692 LHSLSAGNPETQKLIAEAGAIKPLVALLG--EDHNLARKKAAGAIAALSLDMLQNQDAVEK 1750
                       44555566666666666666666655433..333466666667777777777777776665 PP

  == domain 12  score: 13.4 bits;  conditional E-value: 3.2e-05
  Atx10homo_assoc    2 KrelvrllgnlvyknkevqdkvreldgleliLsqcniDdnnPfirewailairnLlegneenqelvae 69  
                       ++e  + l+ l+ +n+++qdk+ + +g++ +    + D    + +e++  a+  L ++  enq  va+
       KOO24146.1 1770 RAEAAAALAVLALDNRKNQDKLAADGGIAPLVGLLKED-TSEYAKEQGSSALMSLAKKHYENQVAVAQ 1836
                       66777889**********************99988766.568*********************99987 PP

  == domain 13  score: -1.3 bits;  conditional E-value: 1.3
  Atx10homo_assoc    9 lgnlvyknkevqdkvreldgleliLsq 35  
                       ++ l+  ++++qd +   +g++l+ s 
       KOO24146.1 1899 ISRLARAHPSNQDAIAVAGGIQLLVSL 1925
                       788999999*************99875 PP

  == domain 14  score: -2.4 bits;  conditional E-value: 2.8
  Atx10homo_assoc   46 rewailairnLlegneenqelvae 69  
                       + +a  a++ L+ +n  nq  v++
       KOO24146.1 2114 KAQAAGALQTLVVDNVPNQVAVSQ 2137
                       556778999999999999988876 PP

  == domain 15  score: 2.0 bits;  conditional E-value: 0.12
  Atx10homo_assoc   13 vyknkevqdkvreldgleliLsqcniDdnnPfirewailairnLlegneenqelvaeL 70  
                       ++ n+++++ v++ +g++ ++ + +  +  P  +e+a   +  L      n e ++++
       KOO24146.1 2285 SITNQAAKEAVVQAGGIKPLIAALVGGKISPTAQEHAAAVLSWL-APIGTNAEAIRKM 2341
                       5689999******************************8777555.4445555666665 PP

  == domain 16  score: -1.8 bits;  conditional E-value: 1.8
  Atx10homo_assoc    7 rllgnlvyknkevqdkvreldgleliLsq 35  
                       r l+ ++ +++++q+++ e+++++ ++s 
       KOO24146.1 2405 RALSDIALDSTDTQSQIAEEGAIAPLISM 2433
                       5688899999*************998876 PP

  == domain 17  score: 3.1 bits;  conditional E-value: 0.054
  Atx10homo_assoc   16 nkevqdkvreldgleliLsqcniDdnnPfirewailairnLlegneenqel 66  
                       ++e+q  +   +gl+ + +   + d n + +++a  ai  L  +  +nq  
       KOO24146.1 2513 CEENQTAIALAGGLPPLVEL--LSDANEITQQYAAAAIESLARDHLDNQVA 2561
                       67888888888888888875..468999********************965 PP

  == domain 18  score: -2.1 bits;  conditional E-value: 2.3
  Atx10homo_assoc   38 iDdnnPfirewailairnLlegneenqelva 68  
                       +D +n   +  + +a+  L   n++n+  + 
       KOO24146.1 2612 LDTRNASAQMKSAVALAVLASRNADNRTAIT 2642
                       6888888999999999999999*99999886 PP

  == domain 19  score: -1.8 bits;  conditional E-value: 1.9
  Atx10homo_assoc    2 KrelvrllgnlvyknkevqdkvreldgleliL 33  
                       +++  ++l+ l+ ++ ++++ +++ +g+++++
       KOO24146.1 2789 REHAASVLSALAVSRGNNKKMIVQAGGIPALI 2820
                       56777899********************9876 PP

  == domain 20  score: -1.3 bits;  conditional E-value: 1.2
  Atx10homo_assoc   22 kvreldgleliLsqcniDdnnPfirewailairnLlegneenqelv 67  
                       ++ e  gl+ +L++ +  + n+     a  ++ nL+ +  + + ++
       KOO24146.1 2852 QIIEYIGLPPLLHALQ--RGNDQTCGFAAACLTNLCRDPDAKRTMI 2895
                       6777778888887765..56677778999*******9988877776 PP

>> Arm_2  Armadillo-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.1      0.74   1.3e+03     126     185 ..     183     241 ..      70     258 .. 0.50
   2 ?    4.4   0.0     0.012        22      45      86 ..     306     348 ..     278     370 .. 0.81
   3 ?    1.4   0.0       0.1   1.8e+02     123     175 ..     426     479 ..     422     495 .. 0.84
   4 ?    4.2   0.0     0.014        26      47     188 ..     512     660 ..     469     664 .. 0.76
   5 !    7.6   0.4    0.0013       2.3      11      91 ..     724     808 ..     715     811 .. 0.72
   6 !    5.2   0.0    0.0072        13     136     173 ..     941     978 ..     937     997 .. 0.88
   7 ?   -0.4   0.0      0.35   6.3e+02      14      63 ..    1066    1114 ..    1020    1139 .. 0.65
   8 ?    1.8   0.0     0.075   1.3e+02      28      85 ..    1477    1534 ..    1450    1545 .. 0.75
   9 !    5.5   0.1    0.0058        10       7      95 ..    1663    1752 ..    1656    1754 .. 0.85
  10 ?    1.9   0.0      0.07   1.3e+02      17      64 ..    1880    1927 ..    1801    1933 .. 0.91
  11 !   15.1   0.0   6.8e-06     0.012      25     178 ..    2027    2178 ..    2017    2202 .. 0.87
  12 ?   -2.8   0.0       1.9   3.3e+03      26      78 ..    2314    2366 ..    2282    2370 .. 0.69
  13 ?   -1.4   0.0      0.74   1.3e+03      28      83 ..    2498    2553 ..    2486    2564 .. 0.79
  14 ?    2.8   0.2     0.037        67      19     116 ..    2531    2630 ..    2513    2698 .. 0.76
  15 ?   -2.6   0.0       1.7   3.1e+03      29      78 ..    2665    2714 ..    2648    2725 .. 0.81
  16 ?    3.4   0.0     0.025        44     136     183 ..    2859    2906 ..    2849    2911 .. 0.87

  Alignments for each domain:
  == domain 1  score: -1.4 bits;  conditional E-value: 0.74
       Arm_2 126 neyqhllvsyisellsLLskGnekikvqvLkvllnls.eNpamtrellsakvlssllslfn 185
                  ++    +  i+ ll+LLs G  +  +     l  l+ +Npa   e+  a + + llsl n
  KOO24146.1 183 GQDAIAAAGAIQLLLNLLSVGKAQ--MPAAHALAQLArKNPAIQTEISAAGGIAPLLSLLN 241
                 333333444566666666666543..33344555554346666666666666666666655 PP

  == domain 2  score: 4.4 bits;  conditional E-value: 0.012
       Arm_2  45 vnqdiirdlggitiianlls.ksnaevkekalnalnnlsenve 86 
                  nqd+i  lgg+ ii   l  +s++ v+ +a  al + s +++
  KOO24146.1 306 ENQDFIARLGGVKIIIPHLGlSSSPDVQTQAAFALAEVSRSNH 348
                 59***********9998887367899*********99997655 PP

  == domain 3  score: 1.4 bits;  conditional E-value: 0.1
       Arm_2 123 svtneyqhllvsyisellsLLskGnekikvqvLkvllnl.seNpamtrellsak 175
                 s+ +e q  l++  + l++LLs G +  +    +vl  + +eNp   +++  a 
  KOO24146.1 426 SIGFENQDNLIQITRLLIELLSLGTKDGQTRAVQVLQTIrAENPSSHQTIADAG 479
                 5677888888999999**********9999999999887689*99999987775 PP

  == domain 4  score: 4.2 bits;  conditional E-value: 0.014
       Arm_2  47 qdiirdlggitiianllsksnaevkekalnalnnlsenven...qkkikvyvnqvckdivssplNse.vQlagLklltnlsvtneyq.hll.vsyisel 139
                 q ++ + gg+t + + l +   + +e a  al +l++n+++   q   +  ++ ++++ v  p  se v + +   l +l+v    +  ++ +  i+ l
  KOO24146.1 512 QGVVASAGGVTPLIKQLDDYRVRNREEAAAALAKLAHNNDDtrsQITKEGGIKPLIRQLVPGPSSSElVRQNAAAALADLAVDTAARdEIVgMGGIRPL 610
                 66788888888888888888888888777777777776654111555677899999999999999985678888999999998765413442568**** PP

       Arm_2 140 lsLLskGnekikvqvLkvllnlseNpamtrell.sakvlssllslfnkke 188
                 + LL   ++++k  v   l  l++ +++t++ + +a + + l++l + ke
  KOO24146.1 611 VLLLEDDGHHTKKFVSMALARLAKEHEATQTAIaEAGAIAPLVALLDGKE 660
                 *****************************986626788899999988776 PP

  == domain 5  score: 7.6 bits;  conditional E-value: 0.0013
       Arm_2  11 pkelekllalLkssedpliqeialltlgnsaays.vnqdiirdlggitiianlls...ksnaevkekalnalnnlse.nvenqkki 91 
                 ++ ++kl+++L+ s + + qe+a  +l+n a  s  n+++i d  gi+ + +ll    +s+++ ke+a+ al +l   ++enq++i
  KOO24146.1 724 VQIIKKLVDMLQDSGNAA-QEQAAAALANLARESeDNRKTIVDANGIVPLLALLDadrHSSPKAKENAVGALKQLCRrSKENQSQI 808
                 56789*********9976.55666778887765526788777776655555555423368999**********9976256777776 PP

  == domain 6  score: 5.2 bits;  conditional E-value: 0.0072
       Arm_2 136 isellsLLskGnekikvqvLkvllnlseNpamtrells 173
                 i+ l++ L++ ++k++ +    + +l++N++ t++l+ 
  KOO24146.1 941 IPPLIQCLQAASGKVQAYAAHAMFCLAQNNTTTQQLIA 978
                 77899*******************************96 PP

  == domain 7  score: -0.4 bits;  conditional E-value: 0.35
       Arm_2   14 lekllalLkssedpliqeialltlgnsaaysvnqdiirdlggitiianll 63  
                  ++ l++lL  +  p  q++a  +l+  a  s ++d+i + ggi  + +l+
  KOO24146.1 1066 IKPLVKLLSHA-SPGAQKQAASALAEIALVSKTRDVIASAGGIEPLVHLM 1114
                  34455555443.35555566666666666666666666666665555555 PP

  == domain 8  score: 1.8 bits;  conditional E-value: 0.075
       Arm_2   28 liqeialltlgnsaaysvnqdiirdlggitiianllsksnaevkekalnalnnlsenv 85  
                  +  ++a  +   +a+++    ii + g i  + nlls+   evk+ a  al  ls ++
  KOO24146.1 1477 AQRRAAHAVCDLAANHPGSPGIIVNAGAISPLVNLLSNGVLEVKKEAAKALSTLSLAS 1534
                  4444444455567889999999999999999999999999999999999998888654 PP

  == domain 9  score: 5.5 bits;  conditional E-value: 0.0058
       Arm_2    7 evLepkelekllalLkssedpliqeialltlgnsaaysvnqdiirdlggitiianllsksnaevkekalnalnnlsen.venqkkikvyv 95  
                   +L+ +  + l+alL + ++ +  e+a    + sa  + +q++i + g i  + +ll +  +  ++ka  a+ +ls    +nq+ ++ ++
  KOO24146.1 1663 VILNESAVAPLIALLTQGTQDAKAEAAGALHSLSAGNPETQKLIAEAGAIKPLVALLGEDHNLARKKAAGAIAALSLDmLQNQDAVEKFM 1752
                  4588999999999999999999999999999999999***********999999999999999999999999999965258888888776 PP

  == domain 10  score: 1.9 bits;  conditional E-value: 0.07
       Arm_2   17 llalLkssedpliqeialltlgnsaaysvnqdiirdlggitiianlls 64  
                  +++lL s+++ +  ++a  +   + a++ nqd i   ggi ++ +ll 
  KOO24146.1 1880 IVELLGSTDKQTSAKAARGISRLARAHPSNQDAIAVAGGIQLLVSLLD 1927
                  6788899999888999988888999***************99988775 PP

  == domain 11  score: 15.1 bits;  conditional E-value: 6.8e-06
       Arm_2   25 edpliqeialltlgnsaaysvnqdiirdlggitiianllsksnaevkekalnalnnlsenvenqkkikvy..vnqvckdivssplNsevQlagLkll 119 
                    p +++ +  +l+  a +s nq  i   ggi+ +  lls+ + e +e    al  l+e + n   i +   +  +++        ++ Q ag   l
  KOO24146.1 2027 GHPEVHRDVAGALSSLASHSTNQIAIAHAGGIVPLVGLLSTASREAQETVAAALHSLAETSANRVAIASAggITPLVDLFDGGTDDAKAQAAG--AL 2121
                  56889999999*********************9999***********999999999999999888887654499999999999999*****99..58 PP

       Arm_2  120 tnlsvtneyqhllvsyisellsLLskGnekikvqvLkvllnlseNpamtrellsakvls 178 
                    l v n  + + vs  ++l++L+++G+   + +v  +l nl+ Np++   + +a +  
  KOO24146.1 2122 QTLVVDNVPNQVAVS--QDLVRLIKTGSALAQEHVTELLRNLATNPDNRGAIAKAGAIP 2178
                  9999**999999887..6*****************************998887776655 PP

  == domain 12  score: -2.8 bits;  conditional E-value: 1.9
       Arm_2   26 dpliqeialltlgnsaaysvnqdiirdlggitiianllsksnaevkekalnal 78  
                   p+ qe a  +l+  a    n + ir++ gi  +  ll +  +  k++a  al
  KOO24146.1 2314 SPTAQEHAAAVLSWLAPIGTNAEAIRKMKGIEPLVRLLLEGTPDAKVHAADAL 2366
                  68888999999999999999999999998886666666555555555555544 PP

  == domain 13  score: -1.4 bits;  conditional E-value: 0.74
       Arm_2   28 liqeialltlgnsaaysvnqdiirdlggitiianllsksnaevkekalnalnnlse 83  
                  +  + a+ +l   aa   nq  i   gg++ + +lls+ n+  ++ a  a++ l+ 
  KOO24146.1 2498 ITYQYATKALWRVAACEENQTAIALAGGLPPLVELLSDANEITQQYAAAAIESLAR 2553
                  4556777788888999999***********************99999999987764 PP

  == domain 14  score: 2.8 bits;  conditional E-value: 0.037
       Arm_2   19 alLkssedpliqeialltlgnsaaysvnqdiirdlggitiianllsksnaevkekalnal.nnlsenvenqkkikvyvnqvckdi.vssplNsevQl 113 
                  +lL  +++ + q +a  + + +  +  nq  + + g i  + +ll + +   +e+a+ al n  s+ ve  +++ +++ +v++    s+++ s+v l
  KOO24146.1 2531 ELLSDANEITQQYAAAAIESLARDHLDNQVALMKGGAIIPLVALLGTDSVATQEHAVGALlNIASNDVESRDRVIFHLVEVLDTRnASAQMKSAVAL 2627
                  55555555555555555555556666666655555655555568899999999999987626678889999**********9976156689999988 PP

       Arm_2  114 agL 116 
                  a L
  KOO24146.1 2628 AVL 2630
                  765 PP

  == domain 15  score: -2.6 bits;  conditional E-value: 1.7
       Arm_2   29 iqeialltlgnsaaysvnqdiirdlggitiianllsksnaevkekalnal 78  
                   qe+a  +l+  a  + n+++i    g++ + ++ls +++e + +a  al
  KOO24146.1 2665 PQERAAAVLCDLARGAENKETIVAEKGVPPLVAMLSCPSPEAQTHAAGAL 2714
                  57889999999999999999998888888888899***999998887666 PP

  == domain 16  score: 3.4 bits;  conditional E-value: 0.025
       Arm_2  136 isellsLLskGnekikvqvLkvllnlseNpamtrellsakvlssllsl 183 
                  ++ ll+ L++Gn ++       l nl   p++ r++++  ++ +ll l
  KOO24146.1 2859 LPPLLHALQRGNDQTCGFAAACLTNLCRDPDAKRTMIELGASDALLEL 2906
                  5779************999*******************9999998765 PP

>> V-ATPase_H_N  V-ATPase subunit H
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.9   0.0     0.062   1.1e+02     105     205 ..      23     120 ..      10     131 .. 0.70
   2 ?   -0.3   0.0      0.29   5.1e+02     125     214 ..     169     248 ..     136     310 .. 0.52
   3 ?   -0.8   0.0       0.4   7.1e+02     123     198 ..     538     613 ..     397     641 .. 0.63
   4 !    5.5   0.0    0.0048       8.6     145     201 ..     725     783 ..     522     994 .. 0.83
   5 !    9.4   0.0   0.00033      0.58      99     200 ..    1010    1115 ..     993    1132 .. 0.78
   6 ?    1.8   0.1     0.066   1.2e+02     121     204 ..    1601    1681 ..    1444    1705 .. 0.72
   7 !    6.0   0.0    0.0035       6.2      95     201 ..    1867    2111 ..    1849    2192 .. 0.81
   8 ?    1.4   0.0     0.085   1.5e+02     101     199 ..    2209    2308 ..    2189    2336 .. 0.79
   9 ?   -3.0   0.0       1.9   3.4e+03     124     216 ..    2403    2503 ..    2388    2518 .. 0.68
  10 !   12.8   0.0   2.9e-05     0.051      98     200 ..    2594    2700 ..    2568    2717 .. 0.84
  11 ?    2.4   0.0     0.044        79     108     212 ..    2735    2831 ..    2729    2870 .. 0.85

  Alignments for each domain:
  == domain 1  score: 1.9 bits;  conditional E-value: 0.062
  V-ATPase_H_N 105 pwkpflkllnrqddfivllalrllakllvqgkkksnklv..esaLnrllqlLssqlssstnevieiavrllqellrtkeyRelfve.adgvstlisi 198
                   ++k ++k l+ +++ iv+  + +l +l+ qg+ ++  +     a+  l+++Lss     + + + +a  +l+e++++k  +++++  a  + +l+++
    KOO24146.1  23 LIKDLVKKLSDPNSSIVEGGAAMLKSLAEQGHREHADALvtCGAVGPLVRVLSS----GSTDAQTSACSALSEIAQHKVSHQAAIVeAGALLPLVKL 115
                   556677778888888888888888888888888877733344444556666655....444457899***********9988765538888899999 PP

  V-ATPase_H_N 199 lrstvan 205
                   l+ t ++
    KOO24146.1 116 LK-T-GS 120
                   92.2.22 PP

  == domain 2  score: -0.3 bits;  conditional E-value: 0.29
  V-ATPase_H_N 125 lrllakllvqgkkksnklv..esaLnrllqlLssqlssstnevieiavrllqellrtkeyRelfve.adgvstlisilrstvanstrvgiQlq 214
                   ++ la+++++ k   + +     a++ ll+lLs   ++        a+++l++l+r++   ++ ++ a g+ +l+s+l       + v+++ q
    KOO24146.1 169 AKGLANIASFDKVAGQDAIaaAGAIQLLLNLLSVGKAQ------MPAAHALAQLARKNPAIQTEISaAGGIAPLLSLL-------NGVNTDAQ 248
                   55555555555555555333333334444444332222......2345555555555554444444455555555555.......22222222 PP

  == domain 3  score: -0.8 bits;  conditional E-value: 0.4
  V-ATPase_H_N 123 lalrllakllvqgkkksnklv.esaLnrllqlLssqlssstnevieiavrllqellrtkeyRelfveadgvstlisi 198
                    a+  lakl+  ++++ ++++ e  ++ l++ L    sss++ v + a+ +l+ l+   + R  +v   g+ +l+ +
    KOO24146.1 538 EAAAALAKLAHNNDDTRSQITkEGGIKPLIRQLVPGPSSSEL-VRQNAAAALADLAVDTAARDEIVGMGGIRPLVLL 613
                   344455555555555555544444445555555555555444.4455555555555555555555555555555555 PP

  == domain 4  score: 5.5 bits;  conditional E-value: 0.0048
  V-ATPase_H_N 145 saLnrllqlLssqlssstnevieiavrllqellrtk.eyRelfveadgvstlisilr.....s 201
                   +++++l+++L++    s n  +e a+ +l++l+r++ + R+++v+a+g+ +l+++l      s
    KOO24146.1 725 QIIKKLVDMLQD----SGNAAQEQAAAALANLARESeDNRKTIVDANGIVPLLALLDadrhsS 783
                   333333333333....33334566666667776654146777777777777777775333331 PP

  == domain 5  score: 9.4 bits;  conditional E-value: 0.00033
  V-ATPase_H_N   99 kkeeqd.......pwkpflkllnrqddfivllalrllakllvqgkkksnklv.esaLnrllqlLssqlssstnevieiavrllqellrtkeyRel 185 
                     +ee+        ++kp++ +l  + d+ ++l+++++++l+  ++     +     ++ l++lLs+     + + ++ a+ +l+e++ +++ R +
    KOO24146.1 1010 SQEENHpliveagCFKPMVSMLAAEGDILPELSAFVMVRLAQSNAAVAMDIAeTGGIKPLVKLLSH----ASPGAQKQAASALAEIALVSKTRDV 1100
                    44444445666779**************************99888877774434555666666664....55577899***************** PP

  V-ATPase_H_N  186 fveadgvstlisilr 200 
                    + +a g+++l++++ 
    KOO24146.1 1101 IASAGGIEPLVHLMD 1115
                    ************993 PP

  == domain 6  score: 1.8 bits;  conditional E-value: 0.066
  V-ATPase_H_N  121 vllalrllakllvqgkkksnklv.esaLnrllqlLssqlssstnevieiavrllqellrt.keyRelfveadgvstlisilrstva 204 
                    +++++ +la+l   ++++   ++  s ++ l++lL+s  +s     ++ a++ l+ + r+ k+ R +++++  v +li++l+ +++
    KOO24146.1 1601 QEISAAVLARLSGDSDENVAAISaASGIRPLVALLTSDSTS----GQAHAATVLADMGRHsKRNRNVILNESAVAPLIALLT-QGT 1681
                    33444444444444444444433555555555555553333....4467777777777652567899999999999999884.333 PP

  == domain 7  score: 6.0 bits;  conditional E-value: 0.0035
  V-ATPase_H_N   95 lslakkeeqdpwkpflkllnrqddfivllalrllakllvqgkkksnklvesaLnrllqlLssqlss............................. 160 
                    l+ +k +e++++  +++ll ++d+++  +a+r + +l+++++ ++      a+   +qlL s+l+                              
    KOO24146.1 1867 LD-NKVNESSIATLIVELLGSTDKQTSAKAARGISRLARAHPSNQDA---IAVAGGIQLLVSLLDIreggvpmeskppeskpmeeskplepprlr 1957
                    33.44455568899999999999999999999999999999998888...444444444444333333456667788888899999999999999 PP

  V-ATPase_H_N  161 ............................................................................................... 160 
                                                                                                                   
    KOO24146.1 1958 lrtgtreipilpsepvedkslaleakalesakvqkemasaiwsmavnnlpnqiviaetggiplliallkghpevhrdvagalsslashstnqiai 2052
                    99999999999999999999999999998888888888888888888888888888888888888888888888888888888888888888888 PP

  V-ATPase_H_N  161 ...............stnevieiavrllqellrtkeyRelfveadgvstlisilr...s 201 
                                    ++e +e+++ +l +l+ t++ R ++ +a g+ +l+++     +
    KOO24146.1 2053 ahaggivplvgllstASREAQETVAAALHSLAETSANRVAIASAGGITPLVDLFDggtD 2111
                    888888888888888888888**************************999998744442 PP

  == domain 8  score: 1.4 bits;  conditional E-value: 0.085
  V-ATPase_H_N  101 eeqdpwkpflkllnrqddfivllalrllakllvqgkkksnklvesaL.....nrllqlLssqlssstnevieiavrllqellrtkeyRelfvead 190 
                    e+ ++ + ++kll ++ + + + a+  l  ++ + k   +    +a+       l++lL++ l++   e +e a+ +l+++  +++ +e++v+a 
    KOO24146.1 2209 EKATVTQELVKLLASEAESVRQRASEALRGVADEDKSATKA---QAVgtgggGPLVNLLKDGLKDGRVEAQEYALWSLSSIT-NQAAKEAVVQAG 2299
                    33337888888888888888888888888777666666666...66667777789999*********************985.6899******** PP

  V-ATPase_H_N  191 gvstlisil 199 
                    g+++li+ l
    KOO24146.1 2300 GIKPLIAAL 2308
                    ******977 PP

  == domain 9  score: -3.0 bits;  conditional E-value: 1.9
  V-ATPase_H_N  124 alrllakllvqgkkksnklv.esaLnrllqlLssqlss.......stnevi.....eiavrllqellrtkeyRelfve.adgvstlisilrstva 204 
                    a+r l  ++  + ++++++  e a+  l++++   ++        s++ v+     ++a+ +l++l++ + + ++ ++ +dg+ +l+++l     
    KOO24146.1 2403 AARALSDIALDSTDTQSQIAeEGAIAPLISMVAAGTKLltgsgrpSSAAVTamkhaNMAALALATLAKDNIVIQVTITeEDGIVPLVELL----- 2492
                    666666666666666666555556666666666533333334444222222445558889999999998877666666699999999999..... PP

  V-ATPase_H_N  205 nstrvgiQlqYq 216 
                     + ++ i  qY 
    KOO24146.1 2493 -KRKAHITYQYA 2503
                    .67777777775 PP

  == domain 10  score: 12.8 bits;  conditional E-value: 2.9e-05
  V-ATPase_H_N   98 akkeeqd...pwkpflkllnrqddfivllalrllakllvqgkkksnklv.esaLnrllqlLssqlssstnevieiavrllqellrtkeyRelfve 188 
                    a ++ ++   ++  ++++l+ +++  +++++  la l++ ++++ + ++ + a++ l++l+ +  s+ t   +e a+  l  l+r  e +e++v 
    KOO24146.1 2594 ASNDVESrdrVIFHLVEVLDTRNASAQMKSAVALAVLASRNADNRTAITaHGAIQPLIRLMGDGKSARTDTPQERAAAVLCDLARGAENKETIVA 2688
                    33333333468888999******************************99999***********999999999*********************** PP

  V-ATPase_H_N  189 adgvstlisilr 200 
                    ++gv++l+++l+
    KOO24146.1 2689 EKGVPPLVAMLS 2700
                    *********995 PP

  == domain 11  score: 2.4 bits;  conditional E-value: 0.044
  V-ATPase_H_N  108 pflkllnrqddfivllalrllakllvqgkkksnklvesaLnrllqlLssqlssstnevieiavrllqellrtk.eyRelfveadgvstlisilrs 201 
                    p++ ll ++ +  ++ ++  l  l++ g+++  +++  a++ l++l+ s+l + t+   e a+  l++l+ ++ + ++++v+a g++ li++l  
    KOO24146.1 2735 PLVALLGSPMENAQMYSAGALFHLASNGDNRVATVKAGAIPSLVTLIHSKLPD-TR---EHAASVLSALAVSRgNNKKMIVQAGGIPALIALL-- 2823
                    6677777777778889999999999999999999889999*****99998888.55...78899999998766268999**************.. PP

  V-ATPase_H_N  202 tvanstrvgiQ 212 
                       ++trv +Q
    KOO24146.1 2824 ---SDTRVLTQ 2831
                    ...78888887 PP

>> HEAT_2  HEAT repeats
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.0   1.1     0.002       3.6       4      88 .]      27     132 ..      20     132 .. 0.68
   2 ?    4.0   2.6     0.037        67       3      71 ..     111     200 ..     109     215 .. 0.70
   3 ?    1.1   1.0       0.3   5.3e+02      20      58 ..     212     258 ..     193     273 .. 0.52
   4 ?    2.3   0.8      0.12   2.2e+02       2      60 ..     234     302 ..     233     316 .. 0.69
   5 ?    4.5   0.1     0.026        47       2      60 ..     276     345 ..     275     354 .. 0.79
   6 !   10.9   0.1   0.00025      0.45       5      72 ..     364     447 ..     360     462 .. 0.73
   7 ?    2.4   0.1      0.12   2.1e+02      33      60 ..     521     548 ..     493     560 .. 0.72
   8 !   11.2   2.6    0.0002      0.36       2      62 ..     522     595 ..     521     602 .. 0.78
   9 !    9.5   4.2    0.0007       1.2       2      86 ..     564     671 ..     563     673 .. 0.74
  10 !    8.6   2.1    0.0014       2.5      17      88 .]     668     750 ..     649     750 .. 0.74
  11 !    7.5   1.0    0.0029       5.2       7      61 ..     697     755 ..     691     795 .. 0.64
  12 ?   -0.1   0.6      0.67   1.2e+03      20      20 ..     818     818 ..     769     871 .. 0.51
  13 ?    0.0   0.2      0.64   1.1e+03      18      71 ..     868     932 ..     839     934 .. 0.67
  14 !    9.8   0.1   0.00059       1.1       1      55 [.     941    1005 ..     941    1018 .. 0.81
  15 !   12.4   0.3   9.1e-05      0.16      26      72 ..    1059    1115 ..    1040    1135 .. 0.70
  16 ?    1.3   0.0      0.26   4.7e+02      17      60 ..    1290    1340 ..    1272    1355 .. 0.73
  17 ?    5.3   1.8     0.014        25      32      86 ..    1425    1484 ..    1396    1489 .. 0.56
  18 !    8.6   3.0    0.0014       2.5       2      87 ..    1427    1527 ..    1426    1528 .. 0.78
  19 ?    3.5   0.1     0.053        95      30      60 ..    1502    1532 ..    1487    1580 .. 0.80
  20 !    6.8   2.6    0.0051       9.1      28      87 ..    1623    1692 ..    1558    1693 .. 0.85
  21 !   10.0   5.6   0.00048      0.86       2      83 ..    1629    1731 ..    1628    1739 .. 0.73
  22 !    8.1   7.9    0.0019       3.4       2      88 .]    1671    1778 ..    1670    1778 .. 0.76
  23 !    5.9   5.7    0.0091        16       2      85 ..    1713    1818 ..    1712    1823 .. 0.77
  24 ?    4.1   0.8     0.035        63      20      60 ..    1861    1904 ..    1840    1925 .. 0.75
  25 !    7.5   0.7     0.003       5.3       1      87 [.    2018    2121 ..    2018    2122 .. 0.70
  26 !    8.4   1.9    0.0015       2.7      26      88 .]    2170    2237 ..    2154    2237 .. 0.71
  27 !    8.6   1.6    0.0014       2.4       3      63 ..    2179    2244 ..    2177    2284 .. 0.67
  28 ?    0.9   0.1      0.34     6e+02       3      59 ..    2263    2329 ..    2259    2344 .. 0.66
  29 ?    3.9   3.5      0.04        71      15      75 ..    2319    2396 ..    2301    2411 .. 0.64
  30 !   11.7   1.6   0.00015      0.26       1      84 [.    2526    2626 ..    2526    2630 .. 0.74
  31 ?    5.0   0.3     0.018        32      16      55 ..    2668    2714 ..    2657    2740 .. 0.72
  32 !    7.4   0.1    0.0032       5.7       2      55 ..    2775    2838 ..    2774    2848 .. 0.73
  33 ?    4.5   0.1     0.026        47       1      58 [.    2859    2925 ..    2859    2934 .. 0.73

  Alignments for each domain:
  == domain 1  score: 8.0 bits;  conditional E-value: 0.002
      HEAT_2   4 Llqalendpdpevr...raairaLgrignp.........ealpaLvellededpavRraaaeaLgaig...........dpealpaLkellddddddvv 79 
                 L++ l +dp+  +    +a +++L+++g++          a+  Lv++l++ +++ +  a+ aL++i+           +  al  L +ll++ ++   
  KOO24146.1  27 LVKKL-SDPNSSIVeggAAMLKSLAEQGHRehadalvtcGAVGPLVRVLSSGSTDAQTSACSALSEIAqhkvshqaaivEAGALLPLVKLLKTGSSKA- 123
                 55555.45555432122567788887777756666666666999999999999999999999999996444443333434558888888888777665. PP

      HEAT_2  80 ReaAaeaLa 88 
                 +e+Aa+aLa
  KOO24146.1 124 QEQAASALA 132
                 777888875 PP

  == domain 2  score: 4.0 bits;  conditional E-value: 0.037
      HEAT_2   3 aLlqalendpdpevrraairaLg....rignp......ealpaLvellededpavRraaaeaLgai.......g.....dpealpaLkell 71 
                 +L+++l +  + + + +a+ aL+    +ig++       ++  Lv +++  +   ++ aa+ L+ i       g        a+++L+ ll
  KOO24146.1 111 PLVKLL-KTGSSKAQEQAASALAaiddDIGHQrmltdaGCITPLVAMIKGGSVVAQASAAKGLANIasfdkvaGqdaiaAAGAIQLLLNLL 200
                 688999.888889999999999966665555566665555999999999999999999999999773333222122221455777777766 PP

  == domain 3  score: 1.1 bits;  conditional E-value: 0.3
      HEAT_2  20 airaLgrignp.........ealpaLvellededpavRraaaeaLgai 58 
                 a+ +L+r++ p           ++ L++ll+  +++ +  aa a++++
  KOO24146.1 212 ALAQLARKN-PaiqteisaaGGIAPLLSLLNGVNTDAQVKAAAAIAEM 258
                 333333222.22444443334477777777555555555555555444 PP

  == domain 4  score: 2.3 bits;  conditional E-value: 0.12
      HEAT_2   2 daLlqalendpdpevrraairaLg..rignpea.........lpaLvellededpavRraaaeaLgaigd 60 
                 ++Ll++l n  +++ + +a+ a++  +++n+e+         +  L++l+ + +pa ++    aL+++++
  KOO24146.1 234 APLLSLL-NGVNTDAQVKAAAAIAemSWHNKEVqdsvakaggISPLLSLVASRSPAAQARGMGALAQLAH 302
                 7899999.87777777777777775555666544444555669999999999999999888888888763 PP

  == domain 5  score: 4.5 bits;  conditional E-value: 0.026
      HEAT_2   2 daLlqalendpdpevrraairaLgrignp...........ealpaLvell.ededpavRraaaeaLgaigd 60 
                 ++Ll+++  + +p+ +++   aL++++++             ++++++ l  +++p+v+ +aa aL+++ +
  KOO24146.1 276 SPLLSLV-ASRSPAAQARGMGALAQLAHDnrenqdfiarlGGVKIIIPHLgLSSSPDVQTQAAFALAEVSR 345
                 5788877.8888999999889999877766677777776677******9966889***********99864 PP

  == domain 6  score: 10.9 bits;  conditional E-value: 0.00025
      HEAT_2   5 lqalendpdpevrraairaLgrignp..........ealpaLvellededpavRraaaeaLgaig..dpe....alpaLkelld 72 
                   +++n+ + ev+ +++ aL ++ ++          +a++ Lvell   +    ++aa+aL+ ig  +++      ++L ell 
  KOO24146.1 364 AGLIKNSQHAEVKSHVAGALWSMSEDpkikisiagaSAIQPLVELLGLGEGLAVMHAAKALASIGfeNQDnliqITRLLIELLS 447
                 55678999*************66544466666777799**************************97644411214455666555 PP

  == domain 7  score: 2.4 bits;  conditional E-value: 0.12
      HEAT_2  33 lpaLvellededpavRraaaeaLgaigd 60 
                 +  L++ l+d   + R++aa aL+++++
  KOO24146.1 521 VTPLIKQLDDYRVRNREEAAAALAKLAH 548
                 5666677777777777777777777654 PP

  == domain 8  score: 11.2 bits;  conditional E-value: 0.0002
      HEAT_2   2 daLlqalendpdpevrraairaLgrignp............ealpaLvell..ededpavRraaaeaLgaigdpe 62 
                  +L+++l +d     r +a+ aL+++++              + p++++l+   ++++ vR++aa aL+ ++ + 
  KOO24146.1 522 TPLIKQL-DDYRVRNREEAAAALAKLAHNnddtrsqitkegGIKPLIRQLVpgPSSSELVRQNAAAALADLAVDT 595
                 689****.9999999*********6655445566666666566888888997657889***********887544 PP

  == domain 9  score: 9.5 bits;  conditional E-value: 0.0007
      HEAT_2   2 daLlqalen..dpdpevrraairaLgrignpea..........lpaLvellededpavRraaaeaLg...........aigdpealpaLkelldddddd 77 
                 ++L+ +l+   ++++ vr++a+ aL++++ ++a          ++ Lv lled+  ++ + + +aL+           ai++  a++ L +lld ++  
  KOO24146.1 564 KPLIRQLVPgpSSSELVRQNAAAALADLAVDTAardeivgmggIRPLVLLLEDDGHHTKKFVSMALArlakeheatqtAIAEAGAIAPLVALLDGKEGL 662
                 6889999886677788**********77655444555567777**********9999999999999833333333333445788999999999988887 PP

      HEAT_2  78 vvReaAaea 86 
                 + +e+Aa a
  KOO24146.1 663 EAQEEAAGA 671
                 777777766 PP

  == domain 10  score: 8.6 bits;  conditional E-value: 0.0014
      HEAT_2  17 rraairaLg.......rignpealpaLvellededpavRraaaeaLgaig.....dpealpaLkellddddddvvReaAaeaLa 88 
                 ++ a+ aL+        i + + + +Lv ll +++p+ R++a  aL+++      + + ++ L ++l+d  ++  +e+Aa aLa
  KOO24146.1 668 AAGALFALAdhernrlGITEADGIGWLVMLLGCPNPRSREHAEGALVRLSietsnRVQIIKKLVDMLQDSGNA-AQEQAAAALA 750
                 56788888877666333334466************************98444433577899999999865555.5888888885 PP

  == domain 11  score: 7.5 bits;  conditional E-value: 0.0029
      HEAT_2   7 alendpdpevrraairaLgrignp.....ealpaLvellededpavRraaaeaLgaigdp 61 
                 +l  +p+p  r +a  aL r+  +     ++++ Lv++l+d+  a +++aa aL+ ++++
  KOO24146.1 697 LL-GCPNPRSREHAEGALVRLSIEtsnrvQIIKKLVDMLQDSGNAAQEQAAAALANLARE 755
                 34.778888888888888855444344457799999999999999999999999988632 PP

  == domain 12  score: -0.1 bits;  conditional E-value: 0.67
      HEAT_2  20 a 20 
                 a
  KOO24146.1 818 A 818
                 1 PP

  == domain 13  score: 0.0 bits;  conditional E-value: 0.64
      HEAT_2  18 raairaLg........rignpealpaLvell.ededpavRraaaeaLgai..gdpealpaLkell 71 
                 + a++aL         +i+    ++ Lv ll +++++  ++ +a  L+a+  ++p++ ++ +++l
  KOO24146.1 868 ASALWALStdnapnkdTIAKLGGIDPLVGLLiTSDSEKSQMCIAGGLAALafKHPDNRQLIAKRL 932
                 46777777654443333444466999999888888888888888888855226888888877776 PP

  == domain 14  score: 9.8 bits;  conditional E-value: 0.00059
      HEAT_2    1 ldaLlqalendpdpevrraairaLg...........rignpealpaLvellededpavRraaaeaL 55  
                  +++L+q l + ++ +v++ a++a+             i+  +a+p Lv l++ + pa +++a +a+
  KOO24146.1  941 IPPLIQCL-QAASGKVQAYAAHAMFclaqnntttqqLIAKSDAIPPLVALMKRSTPAAQEHATRAI 1005
                  689*****.89999999888877666557777766446666*********************9997 PP

  == domain 15  score: 12.4 bits;  conditional E-value: 9.1e-05
      HEAT_2   26 rignpealpaLvellededpavRraaaeaLgaig..........dpealpaLkelld 72  
                  +i+++  ++ Lv+ll++++p  +++aa aL++i+          +   ++ L +l+d
  KOO24146.1 1059 DIAETGGIKPLVKLLSHASPGAQKQAASALAEIAlvsktrdviaSAGGIEPLVHLMD 1115
                  678888999**********************99732222222213334555555555 PP

  == domain 16  score: 1.3 bits;  conditional E-value: 0.26
      HEAT_2   17 rraairaLgrignp.......ealpaLvellededpavRraaaeaLgaigd 60  
                   ++ai+ L+++++         a+p Lv l+++ +p  ++ aa  L  +g+
  KOO24146.1 1290 GARAIWHLAEQNSNqmalincGAIPDLVMLVKSGSPKAQEYAAAGLMDLGR 1340
                  46888888866554577777788********************99988886 PP

  == domain 17  score: 5.3 bits;  conditional E-value: 0.014
      HEAT_2   32 alpaLvellededpavRraaaeaLgaig......dpealpaLkellddddddvvReaAaea 86  
                   +p Lv +l+d  p     aa+aL++++        + ++ L  ll + +    +++Aa+a
  KOO24146.1 1425 GVPSLVTVLDDGTPKAHSLAADALARLAidsaenQAQIAKYLVGLLGNQSAGA-QRRAAHA 1484
                  56666777777777777777777765533222212334566666665544433.2333433 PP

  == domain 18  score: 8.6 bits;  conditional E-value: 0.0014
      HEAT_2    2 daLlqalendpdpevrraairaLgrignp......ealpaLvellededpavRraaaeaL...........gaigdpealpaLkellddddddvvRe 81  
                  + L+ +l +d  p+    a++aL+r++ +      ++ ++Lv ll ++++  +r aa+a            g i +  a++ L  ll +  + +v+ 
  KOO24146.1 1427 PSLVTVL-DDGTPKAHSLAADALARLAIDsaenqaQIAKYLVGLLGNQSAGAQRRAAHAVcdlaanhpgspGIIVNAGAISPLVNLLSNG-VLEVKK 1521
                  7899999.9***************7765533444566*********************99555544443333333677*******99775.667799 PP

      HEAT_2   82 aAaeaL 87  
                  +Aa+aL
  KOO24146.1 1522 EAAKAL 1527
                  999998 PP

  == domain 19  score: 3.5 bits;  conditional E-value: 0.053
      HEAT_2   30 pealpaLvellededpavRraaaeaLgaigd 60  
                    a+  Lv+ll++   +v ++aa+aL+ + +
  KOO24146.1 1502 AGAISPLVNLLSNGVLEVKKEAAKALSTLSL 1532
                  5688999999999999999999999996643 PP

  == domain 20  score: 6.8 bits;  conditional E-value: 0.0051
      HEAT_2   28 gnpealpaLvellededpavRraaaeaLgaig...........dpealpaLkellddddddvvReaAaeaL 87  
                     + ++ Lv ll+++++  +++aa+ L+ +g           +++a++ L +ll++ + d  +++Aa aL
  KOO24146.1 1623 SAASGIRPLVALLTSDSTSGQAHAATVLADMGrhskrnrnvilNESAVAPLIALLTQGTQDA-KAEAAGAL 1692
                  45577899*********************999666655555545779999999999988777.77777666 PP

  == domain 21  score: 10.0 bits;  conditional E-value: 0.00048
      HEAT_2    2 daLlqalendpdpevrraairaLgrignp...........ealpaLvellededpavRraaaeaLgai...........gdpealpaLkellddddd 76  
                   +L+++l ++ ++  +++a+ +L+++g             +a++ L+ ll+    +  ++aa aL  +           ++  a++ L +ll +d++
  KOO24146.1 1629 RPLVALL-TSDSTSGQAHAATVLADMGRHskrnrnvilneSAVAPLIALLTQGTQDAKAEAAGALHSLsagnpetqkliAEAGAIKPLVALLGEDHN 1724
                  5799999.899999**********554333455566666699********999999999999999655332222221124677*********99999 PP

      HEAT_2   77 dvvReaA 83  
                    ++ aA
  KOO24146.1 1725 LARKKAA 1731
                  8877775 PP

  == domain 22  score: 8.1 bits;  conditional E-value: 0.0019
      HEAT_2    2 daLlqalendpdpevrraairaLg..rignp.........ealpaLvellededpavRraaaeaLgai.....gdpe......alpaLkellddddd 76  
                  ++L+++l +   ++ +++a+ aL   + gnp          a++ Lv ll  ++   R+ aa a++a+     ++++       +  L  ll    +
  KOO24146.1 1671 APLIALL-TQGTQDAKAEAAGALHslSAGNPetqkliaeaGAIKPLVALLGEDHNLARKKAAGAIAALsldmlQNQDavekfmGIGKLVGLLGASIS 1766
                  6899999.8889999999999999774456634444443377************************994444423442233333799*****99999 PP

      HEAT_2   77 dvvReaAaeaLa 88  
                  d+vR++Aa aLa
  KOO24146.1 1767 DEVRAEAAAALA 1778
                  ********9996 PP

  == domain 23  score: 5.9 bits;  conditional E-value: 0.0091
      HEAT_2    2 daLlqalendpdpevrraairaLg.....rignpea......lpaLvell.ededpavRraaaeaLg...........aigdpealpaLkelldddd 75  
                  ++L+++l    +   r++a+ a++      ++n++a      +  Lv ll  + + +vR++aa aL+           +++ +  ++ L  ll++d+
  KOO24146.1 1713 KPLVALL-GEDHNLARKKAAGAIAalsldMLQNQDAvekfmgIGKLVGLLgASISDEVRAEAAAALAvlaldnrknqdKLAADGGIAPLVGLLKEDT 1808
                  6788888.6666778889999999888866789988888888999*****6667899*********9665554444444456778999999999999 PP

      HEAT_2   76 ddvvReaAae 85  
                  +++ +e+  +
  KOO24146.1 1809 SEYAKEQGSS 1818
                  9999887555 PP

  == domain 24  score: 4.1 bits;  conditional E-value: 0.035
      HEAT_2   20 airaLg...rignpealpaLvellededpavRraaaeaLgaigd 60  
                  a+ aL+   + ++ ++  ++vell ++d  + + aa+ ++++++
  KOO24146.1 1861 ALAALAldnKVNESSIATLIVELLGSTDKQTSAKAARGISRLAR 1904
                  4444445566677788889999***************9998863 PP

  == domain 25  score: 7.5 bits;  conditional E-value: 0.003
      HEAT_2    1 ldaLlqalendpdpevrraairaLg..........rignpealpaLvellededpavRraaaeaL...g.......aigdpealpaLkelldddddd 77  
                  +++L+++l+   +pev r ++ aL            i++   +  Lv ll++++++ ++++a aL   +       ai++   +  L +l+d  +dd
  KOO24146.1 2018 IPLLIALLK--GHPEVHRDVAGALSslashstnqiAIAHAGGIVPLVGLLSTASREAQETVAAALhslAetsanrvAIASAGGITPLVDLFDGGTDD 2112
                  578899886..77888888888888544655554444555669999999999888888888887733323333333666788899999999999988 PP

      HEAT_2   78 vvReaAaeaL 87  
                    +++Aa aL
  KOO24146.1 2113 A-KAQAAGAL 2121
                  8.88887776 PP

  == domain 26  score: 8.4 bits;  conditional E-value: 0.0015
      HEAT_2   26 rignpealpaLvellededpavRraaaeaLgai..gd....pealpaLkellddddddvvReaAaeaLa 88  
                   i+   a+p Lv+ le+ ++   ++aa  L+ i  ++      + + L +ll+++ ++ vR++A eaL+
  KOO24146.1 2170 AIAKAGAIPELVRQLESGSEKSMEMAAAGLVLIslKSqaekATVTQELVKLLASEAES-VRQRASEALR 2237
                  5677789999999999988888888888887662222222244789999999987665.5888999985 PP

  == domain 27  score: 8.6 bits;  conditional E-value: 0.0014
      HEAT_2    3 aLlqalendpdpevrraairaLg......rignpealpaLvellededpavRraaaeaLgaigdpea 63  
                   L+ +le + +++   +a+  L       +    ++ + Lv+ll +e + vR+ a eaL  ++d++ 
  KOO24146.1 2179 ELVRQLE-SGSEKSMEMAAAGLVlislksQAEKATVTQELVKLLASEAESVRQRASEALRGVADEDK 2244
                  5666663.33333333333333333232333344779999999999999999999999998877653 PP

  == domain 28  score: 0.9 bits;  conditional E-value: 0.34
      HEAT_2    3 aLlqalendpdpevrraairaLgrignpea.........lpaLvell..ededpavRraaaeaLgaig 59  
                  +L   l +d   e +  a+++L +i n+ a         ++ L+ +l     +p  +++aa  L++++
  KOO24146.1 2263 LLKDGL-KDGRVEAQEYALWSLSSITNQAAkeavvqaggIKPLIAALvgGKISPTAQEHAAAVLSWLA 2329
                  566667.7888899999999999888885544455555666666666433346788888888887774 PP

  == domain 29  score: 3.9 bits;  conditional E-value: 0.04
      HEAT_2   15 evrraairaLg.......rignpealpaLvellededpavRraaaeaLgaig..........dpealpaLkelldddd 75  
                  e ++a++  L+        i+  + ++ Lv+ll    p+   +aa+aL++++          +  a+pa   +l+d++
  KOO24146.1 2319 EHAAAVLSWLApigtnaeAIRKMKGIEPLVRLLLEGTPDAKVHAADALAQLAlragaaldisRAGAIPAFVGWLADPT 2396
                  3444555555555444444455588********9999************98533334443334668888888888876 PP

  == domain 30  score: 11.7 bits;  conditional E-value: 0.00015
      HEAT_2    1 ldaLlqalendpdpevrraairaLg.....rignp......ealpaLvellededpavRraaaeaLgaig......dpealpaLkellddddd.dvv 79  
                  l++L+++l +d+++ +++ a+ a+       ++n+       a+  Lv ll +++ a++++a+ aL  i+      +++++ +L e ld+ +  +  
  KOO24146.1 2526 LPPLVELL-SDANEITQQYAAAAIEslardHLDNQvalmkgGAIIPLVALLGTDSVATQEHAVGALLNIAsndvesRDRVIFHLVEVLDTRNAsAQM 2621
                  689***99.9999988877777777332443444488888888***********************9997333333377999999999887753555 PP

      HEAT_2   80 ReaAa 84  
                  + a+a
  KOO24146.1 2622 KSAVA 2626
                  55544 PP

  == domain 31  score: 5.0 bits;  conditional E-value: 0.018
      HEAT_2   16 vrraairaLg.......rignpealpaLvellededpavRraaaeaL 55  
                   ++a++  L+       +i  ++ +p Lv +l++++p+ + +aa aL
  KOO24146.1 2668 RAAAVLCDLArgaenkeTIVAEKGVPPLVAMLSCPSPEAQTHAAGAL 2714
                  444444555543333333444588********************998 PP

  == domain 32  score: 7.4 bits;  conditional E-value: 0.0032
      HEAT_2    2 daLlqalendpdpevrraairaLg....rignp.......ealpaLvellededpavRraaaeaL 55  
                  + L+ ++ +++ p++r +a+ +L     + gn          +paL+ ll+d+   ++r+aa +L
  KOO24146.1 2775 PSLVTLI-HSKLPDTREHAASVLSalavSRGNNkkmivqaGGIPALIALLSDTRVLTQRHAACSL 2838
                  6677777.788899999999999966663333245555445599999999999999999988665 PP

  == domain 33  score: 4.5 bits;  conditional E-value: 0.026
      HEAT_2    1 ldaLlqalendpdpevrraairaLg.rignp.........ealpaLvellededpavRraaaeaLgai 58  
                  l++Ll al +  ++++   a+ +L   +++p          a +aL+el++++ ++ R +a++ +  +
  KOO24146.1 2859 LPPLLHAL-QRGNDQTCGFAAACLTnLCRDPdakrtmielGASDALLELARSPATWLRGQAIKMINLL 2925
                  58899999.567777777788888833466633444444455999*********99999999987655 PP

>> DUF5578  Family of unknown function (DUF5578)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.2   0.0      0.31   5.5e+02     227     257 ..      70     100 ..      46     179 .. 0.64
   2 ?    1.9   0.1      0.07   1.3e+02     189     260 ..     198     271 ..     192     280 .. 0.73
   3 ?    2.7   0.0     0.039        69     101     177 ..     313     388 ..     279     396 .. 0.84
   4 ?    3.0   0.0     0.033        59     100     225 ..     355     477 ..     346     500 .. 0.76
   5 ?   -1.3   0.0      0.66   1.2e+03     221     252 ..     724     755 ..     693     809 .. 0.54
   6 ?    1.3   0.2       0.1   1.8e+02     159     249 ..     950    1008 ..     856    1021 .. 0.54
   7 ?   -0.6   0.0      0.39     7e+02     188     254 ..    1067    1137 ..    1049    1140 .. 0.67
   8 !   15.0   0.0     7e-06     0.013     167     266 ..    1443    1549 ..    1423    1551 .. 0.82
   9 ?    2.7   0.0      0.04        71     151     249 ..    1672    1780 ..    1626    1805 .. 0.63
  10 !    9.2   0.2   0.00041      0.73     108     252 ..    1757    1905 ..    1749    1924 .. 0.81
  11 !    9.8   0.4   0.00026      0.47     156     252 ..    2142    2242 ..    2132    2253 .. 0.87
  12 ?    3.1   0.2      0.03        54     148     252 ..    2525    2633 ..    2477    2646 .. 0.74
  13 ?    3.7   0.0      0.02        36     160     242 ..    2661    2751 ..    2647    2783 .. 0.71

  Alignments for each domain:
  == domain 1  score: -0.2 bits;  conditional E-value: 0.31
     DUF5578 227 llelLkslhlevqyeaielikelmstevraa 257
                 l+ +L+s  ++ q+ a + ++e+++++v+++
  KOO24146.1  70 LVRVLSSGSTDAQTSACSALSEIAQHKVSHQ 100
                 4444444444444444444444444444332 PP

  == domain 2  score: 1.9 bits;  conditional E-value: 0.07
     DUF5578 189 gliallacsspkaqqlalqtlrvvqeivkeakpsivepllelLkslhlevqyeaielikelm..stevraallk 260
                  l+++ +++ p a+ la  + +    +++ +    + pll+lL+ ++++ q +a   i e+   ++ev++++ k
  KOO24146.1 198 NLLSVGKAQMPAAHALAQLARKNPAIQTEISAAGGIAPLLSLLNGVNTDAQVKAAAAIAEMSwhNKEVQDSVAK 271
                 5666666666666666655555444445555667899*********************9998435588888765 PP

  == domain 3  score: 2.7 bits;  conditional E-value: 0.039
     DUF5578 101 EiGGvltlleilglkqlkeedkaealkllqlvanaGrkyKEliCEsygvravaeclakskseetqeeaqklleslae 177
                   GGv +++  lgl+ + + + + a   l  v+ + +  +  i +  g+ ++a ++ +s+ +e+++++   l+s++e
  KOO24146.1 313 RLGGVKIIIPHLGLSSSPDVQTQAAF-ALAEVSRSNHSIQTSIVDHGGISQLAGLIKNSQHAEVKSHVAGALWSMSE 388
                 36999999999999999998877666.578899********************************999999998865 PP

  == domain 4  score: 3.0 bits;  conditional E-value: 0.033
     DUF5578 100 lEiGGvltlleilglkqlkeedkaealkllqlvanaGrkyKEliCEsygvravaeclakskseetqeeaqklleslaegnPkyqkqvykgliallacss 198
                 +++GG+  l  +++ +q  e   + a  l ++      k K  i  +  ++ + e+l   +  ++ ++  k l s++  n +   q+ + li ll+  +
  KOO24146.1 355 VDHGGISQLAGLIKNSQHAEVKSHVAGALWSMSE--DPKIKISIAGASAIQPLVELLGLGEGLAVMHA-AKALASIGFENQDNLIQITRLLIELLSLGT 450
                 5667777777777777766666555555444432..34677777777777777777777776666555.556789999999999*************** PP

     DUF5578 199 pkaqqlalqtlrvvqeivkeakpsive 225
                 + +q  a+q l++++   ++++++i +
  KOO24146.1 451 KDGQTRAVQVLQTIRAENPSSHQTIAD 477
                 ********************9999976 PP

  == domain 5  score: -1.3 bits;  conditional E-value: 0.66
     DUF5578 221 psivepllelLkslhlevqyeaielikelmst 252
                  +i+++l+++L+      q +a   + +l+++
  KOO24146.1 724 VQIIKKLVDMLQDSGNAAQEQAAAALANLARE 755
                 44455555555554444444444444444422 PP

  == domain 6  score: 1.3 bits;  conditional E-value: 0.1
     DUF5578  159 skseetqeeaqklleslaegnPkyqkqvykg.....liallacsspkaqqlalqtlrvvqeivkeakpsivepllelLkslhlevqyeaielikel 249 
                  + s ++q++a + +  la++n   q+ + k+     l+al++ s+p aq  a +++                                       l
  KOO24146.1  950 AASGKVQAYAAHAMFCLAQNNTTTQQLIAKSdaippLVALMKRSTPAAQEHATRAIWH-------------------------------------L 1008
                  2233444444444444444444444444433333334444444444444444444443.....................................3 PP

  == domain 7  score: -0.6 bits;  conditional E-value: 0.39
     DUF5578  188 kgliallacsspkaqqlalqtlrvvqeivke....akpsivepllelLkslhlevqyeaielikelmstev 254 
                  k l+ ll+ +sp aq+ a+++l  +  + k+    a    +epl++l+ s  +     a + i ++ +++v
  KOO24146.1 1067 KPLVKLLSHASPGAQKQAASALAEIALVSKTrdviASAGGIEPLVHLMDSSTVGTPETAARAIAHISREDV 1137
                  55777888888888888777665544443331112445678888888888777777777777777666665 PP

  == domain 8  score: 15.0 bits;  conditional E-value: 7e-06
     DUF5578  167 eaqklleslaegnPkyqkqvykgliallacsspkaqqlalqtlrvvqeivkeak.....psivepllelLkslhlevqyeaielikelmst..evra 256 
                   a + l  la    + q q+ k l++ll  +s  aq+ a+++++ +    + ++        ++pl++lL++  lev++ea + +++l       + 
  KOO24146.1 1443 LAADALARLAIDSAENQAQIAKYLVGLLGNQSAGAQRRAAHAVCDLAANHPGSPgiivnAGAISPLVNLLSNGVLEVKKEAAKALSTLSLAspANQL 1539
                  5666778888888899****************************999999887621111455789*********************99844225566 PP

     DUF5578  257 allkglvalL 266 
                  a+ +glvalL
  KOO24146.1 1540 AIASGLVALL 1549
                  7899****99 PP

  == domain 9  score: 2.7 bits;  conditional E-value: 0.04
     DUF5578  151 avaeclakskseetqeeaqklleslaegnPkyqkqv.....ykgliallacsspkaqq.....lalqtlrvvqeivkeakpsivepllelL.kslhl 236 
                   +  +l++  ++ +++ea   l+sl+ gnP+ qk +      k l+all  +   a++     +a+ +l ++q++    k   + +l+ lL +s+  
  KOO24146.1 1672 PLIALLTQG-TQDAKAEAAGALHSLSAGNPETQKLIaeagaIKPLVALLGEDHNLARKkaagaIAALSLDMLQNQDAVEKFMGIGKLVGLLgASISD 1767
                  344444443.455677777788999999999998763333356788888766444443111115556677777777777777778888887446777 PP

     DUF5578  237 evqyeaielikel 249 
                  ev++ea   +  l
  KOO24146.1 1768 EVRAEAAAALAVL 1780
                  8888877665544 PP

  == domain 10  score: 9.2 bits;  conditional E-value: 0.00041
     DUF5578  108 lleilglkqlkeedkaealkllqlvanaGrkyKEliCEsygvravaeclakskseetqeeaqklleslaegnPkyqkqvykg.....liallacssp 199 
                  l+ +lg + +++e +aea   l ++a   rk ++ +    g+  +  +l + +se ++e+ ++ l sla+   + q  v ++     l+a+l  +s 
  KOO24146.1 1757 LVGLLGAS-ISDEVRAEAAAALAVLALDNRKNQDKLAADGGIAPLVGLLKEDTSEYAKEQGSSALMSLAKKHYENQVAVAQAggiapLVACLGLAST 1852
                  55555544.566778899999999999999999999999999999999*******************9998655554444323333388888889** PP

     DUF5578  200 kaqqlalqtlrvvqeivkeakpsivepllelLkslhlevqyeaielikelmst 252 
                  +aq  ++ +l  +    k  ++si   ++elL s++ +  ++a + i+ l++ 
  KOO24146.1 1853 RAQEQSAGALAALALDNKVNESSIATLIVELLGSTDKQTSAKAARGISRLARA 1905
                  *******************************************9999999865 PP

  == domain 11  score: 9.8 bits;  conditional E-value: 0.00026
     DUF5578  156 lakskseetqeeaqklleslaegnPkyqkqvykg.....liallacsspkaqqlalqtlrvvqeivkeakpsivepllelLkslhlevqyeaielik 247 
                  l k+ s+ +qe++ +ll++la  nP+ +  + k+     l+  l++ s k+  +a+  l +++ + ++ k ++ + l++lL+s    v++ a e ++
  KOO24146.1 2142 LIKTGSALAQEHVTELLRNLA-TNPDNRGAIAKAgaipeLVRQLESGSEKSMEMAAAGLVLISLKSQAEKATVTQELVKLLASEAESVRQRASEALR 2237
                  66889999**********997.599998888774444449999*************************************************99998 PP

     DUF5578  248 elmst 252 
                   ++ +
  KOO24146.1 2238 GVADE 2242
                  87765 PP

  == domain 12  score: 3.1 bits;  conditional E-value: 0.03
     DUF5578  148 gvravaeclakskseetqeeaqklleslaegnPkyqkqvykg.....liallacsspkaqqlalqtlrvvqeivkeakpsivepllelLkslhlevq 239 
                  g+  + e+l+ + +e tq++a + +esla+   + q  + kg     l+all ++s  +q  a+ +l  + +   e++  ++  l+e+L + +   q
  KOO24146.1 2525 GLPPLVELLSDA-NEITQQYAAAAIESLARDHLDNQVALMKGgaiipLVALLGTDSVATQEHAVGALLNIASNDVESRDRVIFHLVEVLDTRNASAQ 2620
                  555566666654.6899999999999999999999998888777777999************998887777777777888888899*****999999 PP

     DUF5578  240 yeaielikelmst 252 
                  +++   +  l+s+
  KOO24146.1 2621 MKSAVALAVLASR 2633
                  9987777766655 PP

  == domain 13  score: 3.7 bits;  conditional E-value: 0.02
     DUF5578  160 kseetqeeaqklleslaegnPkyqkqvykg....liallacsspkaqqlalqtlrvvqeivke....akpsivepllelLkslhlevqyea 242 
                  ++++ qe+a ++l  la+g  + ++ v +     l+a+l+c sp+aq  a+ +l  +    k+    a    +epl++lL s   + q+ +
  KOO24146.1 2661 RTDTPQERAAAVLCDLARGAENKETIVAEKgvppLVAMLSCPSPEAQTHAAGALWHLALLEKNrtiiAGAGGIEPLVALLGSPMENAQMYS 2751
                  45566788888888888887777666654334449*************9998876655443331111446778999999988877776654 PP

>> Cnd1  non-SMC mitotic condensation complex subunit 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.6   0.0    0.0082        15      58     139 ..      22     105 ..       7     109 .. 0.76
   2 ?    2.8   0.0     0.061   1.1e+02      34     158 ..     329     459 ..     327     464 .. 0.68
   3 !    6.0   0.1    0.0061        11      23      86 ..     521     592 ..     519     602 .. 0.77
   4 ?    4.0   0.0     0.026        46      34      90 ..     577     637 ..     575     657 .. 0.85
   5 ?    3.9   0.1     0.027        48      22      93 ..     726     805 ..     708     833 .. 0.67
   6 ?    0.1   0.0       0.4   7.3e+02      59     138 ..     940    1019 ..     926    1025 .. 0.75
   7 ?   -2.6   0.0       2.8     5e+03      56      88 ..    1062    1094 ..    1022    1103 .. 0.73
   8 ?   -2.5   0.0       2.6   4.7e+03      23      55 ..    1066    1102 ..    1059    1118 .. 0.59
   9 ?    1.1   0.0      0.21   3.7e+02      36     125 ..    1476    1566 ..    1442    1620 .. 0.74
  10 ?    2.4   0.0     0.078   1.4e+02      23      90 ..    1712    1785 ..    1703    1893 .. 0.78
  11 ?   -3.5   0.0       5.1   9.1e+03      56     128 ..    2014    2085 ..    1988    2091 .. 0.64
  12 ?    1.0   0.0      0.21   3.8e+02      49     132 ..    2203    2292 ..    2178    2297 .. 0.68
  13 ?    3.1   0.1     0.049        87      24     154 ..    2527    2621 ..    2485    2643 .. 0.63
  14 ?    2.6   0.0      0.07   1.3e+02      23      72 ..    2774    2828 ..    2687    2857 .. 0.86

  Alignments for each domain:
  == domain 1  score: 5.6 bits;  conditional E-value: 0.0082
        Cnd1  58 gflselaklleDenprVvanalaalteiseksenaiynllpd..iisklsdalnecsewgqitilefLlsyipkdkqeaeslve 139
                  ++++l k l+D+n+++v+   a+l+ ++e++ ++    l +   +  l+  l + s ++q++ +++L++  + + +++  +ve
  KOO24146.1  22 TLIKDLVKKLSDPNSSIVEGGAAMLKSLAEQGHREHADALVTcgAVGPLVRVLSSGSTDAQTSACSALSEIAQHKVSHQAAIVE 105
                 4899***************************65555444443115777777777888888888888888887777766666665 PP

  == domain 2  score: 2.8 bits;  conditional E-value: 0.061
        Cnd1  34 dpyVRktaaivvakL......ilndmvkekgflselakll.eDenprVvanalaalteiseksenaiynllpdiisklsdalnecsewgqitilefLls 125
                 +p V+ +aa+++a++      i ++ + + g +s+la l+ + ++++V + +  al  +se  + +i     + i+ l++ l   +  + ++  ++L+s
  KOO24146.1 329 SPDVQTQAAFALAEVsrsnhsI-QTSIVDHGGISQLAGLIkNSQHAEVKSHVAGALWSMSEDPKIKISIAGASAIQPLVELLGLGEGLAVMHAAKALAS 426
                 799************9855322.225778889********55556899999999999988886555555556666666655555555666666666666 PP

        Cnd1 126 yipkdkqeaeslveklcprlqhansavvlaaik 158
                    +++ +  +++  l++ l+  +++ + +a++
  KOO24146.1 427 IGFENQDNLIQITRLLIELLSLGTKDGQTRAVQ 459
                 555555555666666666666666666666665 PP

  == domain 3  score: 6.0 bits;  conditional E-value: 0.0061
        Cnd1  23 vepLrkrLkDedpyVRktaaivvakL.ilnd....mvkekg.flselakll..eDenprVvanalaalteis 86 
                 v+pL k+L D     R+ aa ++akL ++nd     + ++g +   +++l+    +++ V++na aal +++
  KOO24146.1 521 VTPLIKQLDDYRVRNREEAAAALAKLaHNNDdtrsQITKEGgIKPLIRQLVpgPSSSELVRQNAAAALADLA 592
                 57999*********************955555555455555155555666666567799*********9987 PP

  == domain 4  score: 4.0 bits;  conditional E-value: 0.026
        Cnd1  34 dpyVRktaaivvakL....ilndmvkekgflselaklleDenprVvanalaalteisekse 90 
                 ++ VR++aa ++a L      +d +   g +  l  lleD+ +   + + +al  ++++ e
  KOO24146.1 577 SELVRQNAAAALADLavdtAARDEIVGMGGIRPLVLLLEDDGHHTKKFVSMALARLAKEHE 637
                 678************999878888999999***********99999999999999988853 PP

  == domain 5  score: 3.9 bits;  conditional E-value: 0.027
        Cnd1  22 lvepLrkrLkDedpyVRktaaivvakL......ilndmvkekgflselaklleDen..prVvanalaalteiseksenai 93 
                 ++++L   L+D+    +++aa ++a+L       ++++v  +g++  la l  D +  p+  +na+ al+++ ++s+++ 
  KOO24146.1 726 IIKKLVDMLQDSGNAAQEQAAAALANLaresedNRKTIVDANGIVPLLALLDADRHssPKAKENAVGALKQLCRRSKENQ 805
                 56667777777777777777777777766555333335555555555554445533226777777777777777755544 PP

  == domain 6  score: 0.1 bits;  conditional E-value: 0.4
        Cnd1   59 flselaklleDenprVvanalaalteisek.senaiynllpdiisklsdalnecsewgqitilefLlsyipkdkqeaeslv 138 
                   +  l ++l+  + +V+a a +a+  ++++ ++++ +  ++d i  l++ ++  + ++q +  +++ +  +++++    +v
  KOO24146.1  940 GIPPLIQCLQAASGKVQAYAAHAMFCLAQNnTTTQQLIAKSDAIPPLVALMKRSTPAAQEHATRAIWHLASQEEN-HPLIV 1019
                  677788999999999999999999999888555566667788899999888888888888888888888888877.55555 PP

  == domain 7  score: -2.6 bits;  conditional E-value: 2.8
        Cnd1   56 ekgflselaklleDenprVvanalaalteisek 88  
                  e g ++ l kll+  +p  ++ a +al ei+  
  KOO24146.1 1062 ETGGIKPLVKLLSHASPGAQKQAASALAEIALV 1094
                  555677777777777777777777777777755 PP

  == domain 8  score: -2.5 bits;  conditional E-value: 2.6
        Cnd1   23 vepLrkrLkDedpyVRktaaivvakL....ilndmvk 55  
                  ++pL k L+  +p  +k+aa ++a++     ++d++ 
  KOO24146.1 1066 IKPLVKLLSHASPGAQKQAASALAEIalvsKTRDVIA 1102
                  4566666666666666666666666654333334454 PP

  == domain 9  score: 1.1 bits;  conditional E-value: 0.21
        Cnd1   36 yVRktaaivvakL.....ilndmvkekgflselaklleDenprVvanalaalteiseksenaiynllpdiisklsdalnecsewgqitilefLls 125 
                    ++ aa +v+ L      +++++ + g +s l +ll++   +V + a  al+ +s  s+ + + + + ++  l       s ++q ++ ++Ll+
  KOO24146.1 1476 GAQRRAAHAVCDLaanhpGSPGIIVNAGAISPLVNLLSNGVLEVKKEAAKALSTLSLASPANQLAIASGLVALLG----AGSIEAQEHVTQLLLT 1566
                  556677777777765544556688888899999999999999999999999999988887666666555555555....3455555555555554 PP

  == domain 10  score: 2.4 bits;  conditional E-value: 0.078
        Cnd1   23 vepLrkrLkDedpyVRktaaivvakL.....ilndmvkekgflselakll.eDenprVvanalaalteisekse 90  
                  ++pL + L  ++   Rk aa ++a L      ++d v++   + +l  ll    +++V+a a aal  ++  + 
  KOO24146.1 1712 IKPLVALLGEDHNLARKKAAGAIAALsldmlQNQDAVEKFMGIGKLVGLLgASISDEVRAEAAAALAVLALDNR 1785
                  67888888888888999999999988888744556777777888888888666677888888888876665543 PP

  == domain 11  score: -3.5 bits;  conditional E-value: 5.1
        Cnd1   56 ekgflselaklleDenprVvanalaalteiseksenaiynllpdiisklsdalnecsewgqitilefLlsyip 128 
                  e g +  l  ll+  +p+V   +  al+ +++ s+n+i       i  l+  l ++s+++q t+  +L s  +
  KOO24146.1 2014 ETGGIPLLIALLK-GHPEVHRDVAGALSSLASHSTNQIAIAHAGGIVPLVGLLSTASREAQETVAAALHSLAE 2085
                  4445554444444.56777777778888888887777766666666666667777888888888777776655 PP

  == domain 12  score: 1.0 bits;  conditional E-value: 0.21
        Cnd1   49 ilndmvkekgflselaklleDenprVvanalaalteiseksenaiynll......pdiisklsdalnecsewgqitilefLlsyipkdkq 132 
                   l+   ++  + +el kll  e ++V++ a  al  +++++++a+  +         +++ l+d l++   ++q + l +L+s +++ ++
  KOO24146.1 2203 SLKSQAEKATVTQELVKLLASEAESVRQRASEALRGVADEDKSATKAQAvgtgggGPLVNLLKDGLKDGRVEAQEYALWSLSSITNQAAK 2292
                  45556677779999********************99999987666544411122223455555555566666666666666666655555 PP

  == domain 13  score: 3.1 bits;  conditional E-value: 0.049
        Cnd1   24 epLrkrLkDedpyVRktaaivvakL....ilndmvkekg.flselaklleDenprVvanalaalteiseksenaiynllpdiisklsdalnecsewg 115 
                  +pL + L+D ++  ++ aa ++  L    ++n++  +kg  +  l  ll  ++   ++ a+ al +i++++                          
  KOO24146.1 2527 PPLVELLSDANEITQQYAAAAIESLardhLDNQVALMKGgAIIPLVALLGTDSVATQEHAVGALLNIASND-------------------------- 2597
                  56666666666666666666666666666666666666666666666665555555666666666666665.......................... PP

        Cnd1  116 qitilefLlsyipkdkqeaeslveklcprlqhansavvl 154 
                                  +  + ++  l++ l + n + ++
  KOO24146.1 2598 ---------------VESRDRVIFHLVEVLDTRNASAQM 2621
                  ...............333333333333333333333333 PP

  == domain 14  score: 2.6 bits;  conditional E-value: 0.07
        Cnd1   23 vepLrkrLkDedpyVRktaaivvakL.....ilndmvkekgflselaklleDenp 72  
                  ++ L + ++ + p  R++aa v++ L      +++m+ + g +  l  ll+D+  
  KOO24146.1 2774 IPSLVTLIHSKLPDTREHAASVLSALavsrgNNKKMIVQAGGIPALIALLSDTRV 2828
                  556666677777888999999999999888778889999999****999999875 PP

>> Adaptin_N  Adaptin N terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.2   0.0      0.16   2.8e+02     382     412 ..      70     100 ..      13     135 .. 0.45
   2 ?   -0.3   0.0      0.16     3e+02     201     407 ..     417     467 ..     317     479 .. 0.48
   3 !    4.5   0.1    0.0058        10     115     179 ..     726     797 ..     712     835 .. 0.55
   4 !    7.1   0.3   0.00095       1.7     118     296 ..     943    1134 ..     940    1139 .. 0.69
   5 !    9.4   0.0   0.00019      0.34     356     426 ..    1440    1517 ..    1426    1532 .. 0.82
   6 ?    0.2   0.0      0.11   2.1e+02     379     430 ..    1505    1558 ..    1500    1574 .. 0.82
   7 ?   -1.1   0.0      0.29   5.3e+02     118     184 ..    1714    1789 ..    1703    1810 .. 0.79
   8 !    3.8   0.0    0.0097        17     362     415 ..    1860    1913 ..    1850    1927 .. 0.89
   9 ?    3.6   0.0     0.011        19     203     517 ..    2145    2236 ..    2027    2250 .. 0.54
  10 !    7.9   0.1   0.00053      0.94     349     434 ..    2537    2624 ..    2487    2644 .. 0.80
  11 ?   -2.4   0.0      0.71   1.3e+03     115     172 ..    2773    2834 ..    2746    2845 .. 0.67

  Alignments for each domain:
  == domain 1  score: -0.2 bits;  conditional E-value: 0.16
                 HHHHHTTXXHHHHHHHHHHHHHHHHHSTTTS CS
   Adaptin_N 382 llellslsgesvkdeivevirdliqkvpelh 412
                 l+++ls+ ++ ++ ++++++ ++ q++ + +
  KOO24146.1  70 LVRVLSSGSTDAQTSACSALSEIAQHKVSHQ 100
                 3333333333333333333333333333333 PP

  == domain 2  score: -0.3 bits;  conditional E-value: 0.16
                 H............HCS-HHHHHHHHHHHCC---SSHHHH..HHHHHHHCGGCGCSSCHHHHHHHHHCCHCCCCSTHHHCCHHCHHHHHHSSCCTCHHHH CS
   Adaptin_N 201 l............teldpwlqvkiiklltrlarqepeerskkellesllnllqssnnaVlletvnlivelapknelivlavnaLvrllsskdenlryva 287
                 +            +                                                                                     
  KOO24146.1 417 VmhaakalasigfE------------------------------------------------------------------------------------- 430
                 03333333333333..................................................................................... PP

                 HCHHHHHHHHXXTTTTTTTCCCCSXXTTSXHHHHHHHHHHHCCCXXTTTHHHHHHHHHHHTTSSXXHHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHH CS
   Adaptin_N 288 LrtllkivkkepkavqhldlkifllktdddvsirlkaldlllklvdesNvkeivkeLkkyvkevadedfksklvkaIgrlaekfatdaewvldvllell 386
                                                                                                     +++  ++   l+ell
  KOO24146.1 431 -----------------------------------------------------------------------------------NQDNLIQITRLLIELL 446
                 ...................................................................................3333334444444444 PP

                 TTXXHHHHHHHHHHHHHHHHH CS
   Adaptin_N 387 slsgesvkdeivevirdliqk 407
                 sl  +  +  +v+v++ +  +
  KOO24146.1 447 SLGTKDGQTRAVQVLQTIRAE 467
                 444444444444444444444 PP

  == domain 3  score: 4.5 bits;  conditional E-value: 0.0058
                 HHHHHHHHHT-SSHHHHHHHHHHHHHCCCCCHHCCCCC.H.HHHHHHCT....T-SS..HHHHHHHHHHHHHH CS
   Adaptin_N 115 lapaikkllkdrspyvrkkAalailklykkdpdllrkq.l.veeikell....sdkd..pgvvlaAvalleei 179
                 + +++ ++l+d+ +  + +Aa a++ l + ++d  rk+ + ++ i+ ll    +d++  p+ + +Av +l+++
  KOO24146.1 726 IIKKLVDMLQDSGNAAQEQAAAALANLARESEDN-RKTiVdANGIVPLLalldADRHssPKAKENAVGALKQL 797
                 3344444444444444444555555555544444.33333344444444443434434444444555555444 PP

  == domain 4  score: 7.1 bits;  conditional E-value: 0.00095
                  HHHHHHT-SSHHHHHHHHHHHHHCCCC...CHHCCCCC.HHHHHHHCTT-SSHHHHHHHHHHHHHH...HCCCCCCC...HHHHHHHCCHHHHHHCS CS
   Adaptin_N  118 aikkllkdrspyvrkkAalailklykk...dpdllrkq.lveeikellsdkdpgvvlaAvalleei...kkndrlll...kllpklvrrLcnlltel 204 
                   + ++l+  s  v+  Aa+a++ l ++   +++l+ k   ++ ++ l++ ++p  + +A+ ++ ++   + n+ l +    + + +v+ L     +l
  KOO24146.1  943 PLIQCLQAASGKVQAYAAHAMFCLAQNnttTQQLIAKSdAIPPLVALMKRSTPAAQEHATRAIWHLasqEENHPL-IveaGCFKPMVSMLAAEGDIL 1038
                  678999999999999*********99977778899999999999*********************9764333333.235555555555555444888 PP

                  -HHHHHHHHHHHCC---SSHHHH..HHHHHHHCGGCG......CSSCHHHHHHHHHCCHCCCCSTHHHCCHHCHHHHHHSSCCTCHHHHHCHHHHHH CS
   Adaptin_N  205 dpwlqvkiiklltrlarqepeerskkellesllnllq......ssnnaVlletvnlivelapknelivlavnaLvrllsskdenlryvaLrtllkiv 295 
                   ++   ++++l ++ a++  + ++    ++ l +ll+      ++++a  l+ + l+ +  +  +     ++ Lv l++s+  ++   a r++++i+
  KOO24146.1 1039 PELSAFVMVRLAQSNAAVAMDIAE-TGGIKPLVKLLShaspgaQKQAASALAEIALVSKTRDVIA-SAGGIEPLVHLMDSSTVGTPETAARAIAHIS 1133
                  888888999998877777666664.3566666666663334444444444444444444444444.4667888888888888777777777777776 PP

                  H CS
   Adaptin_N  296 k 296 
                   
  KOO24146.1 1134 R 1134
                  5 PP

  == domain 5  score: 9.4 bits;  conditional E-value: 0.00019
                  HHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHTTXXHHHHHHHHHHHHHHHHHSTTTSTTC.....HHHHCCTCCG..X CS
   Adaptin_N  356 fksklvkaIgrlaekfatdaewvldvllellslsgesvkdeivevirdliqkvpelheei.....iekLaellek..i 426 
                    s +++a++rla+ +a++++++ + l+ ll +++ ++++ ++++++dl  + p + ++i     i+ L++ll++  +
  KOO24146.1 1440 AHSLAADALARLAIDSAENQAQIAKYLVGLLGNQSAGAQRRAAHAVCDLAANHPGSPGIIvnagaISPLVNLLSNgvL 1517
                  678899************************************************998888555556667777776653 PP

  == domain 6  score: 0.2 bits;  conditional E-value: 0.11
                  HHHHHHHHTTXXHHHHHHHHHHHHHHHHHSTTTSTTCHHHHCCTCCG..XXSHH CS
   Adaptin_N  379 ldvllellslsgesvkdeivevirdliqkvpelheeiiekLaellek..iesee 430 
                  ++ l++lls+    vk+e+++++  l    p+++  i++ L++ll +  ie +e
  KOO24146.1 1505 ISPLVNLLSNGVLEVKKEAAKALSTLSLASPANQLAIASGLVALLGAgsIEAQE 1558
                  667999999999999999999999999999999999999999998776555444 PP

  == domain 7  score: -1.1 bits;  conditional E-value: 0.29
                  HHHHHHT-SSHHHHHHHHHHHHHCCCC...CHHCCCCC.HHHHHHHCT.T-SSHHHHHHHHHHHHHH....HCCCC CS
   Adaptin_N  118 aikkllkdrspyvrkkAalailklykk...dpdllrkq.lveeikell.sdkdpgvvlaAvalleei....kkndr 184 
                   + +ll  +++  rkkAa ai++l      ++d+++k+  + +++ ll ++ +  v + A a+l  +    +kn++
  KOO24146.1 1714 PLVALLGEDHNLARKKAAGAIAALSLDmlqNQDAVEKFmGIGKLVGLLgASISDEVRAEAAAALAVLaldnRKNQD 1789
                  5667888999999*****99999965445599**999866888888889888888888888888888777644443 PP

  == domain 8  score: 3.8 bits;  conditional E-value: 0.0097
                  HHHHHHHHHSCCHHHHHHHHHHHHHTTXXHHHHHHHHHHHHHHHHHSTTTSTTC CS
   Adaptin_N  362 kaIgrlaekfatdaewvldvllellslsgesvkdeivevirdliqkvpelheei 415 
                   a++ la   + +++++ + ++ell ++++ ++++++  i +l +  p++++ i
  KOO24146.1 1860 GALAALALDNKVNESSIATLIVELLGSTDKQTSAKAARGISRLARAHPSNQDAI 1913
                  5788899999999*************************************9987 PP

  == domain 9  score: 3.6 bits;  conditional E-value: 0.011
                  CS-HHHHHHHHHHHCC---SSHHHH..HHHHHHHCGGCGCSSCHHHHHHHHHCCHCCCCSTHHHCCHHCHHHHHHSSCCTCHHHHHCHHHHHHHHXX CS
   Adaptin_N  203 eldpwlqvkiiklltrlarqepeerskkellesllnllqssnnaVlletvnlivelapknelivlavnaLvrllsskdenlryvaLrtllkivkkep 299 
                  + + ++q                                                                                          
  KOO24146.1 2145 TGSALAQE----------------------------------------------------------------------------------------- 2152
                  33333333......................................................................................... PP

                  TTTTTTTCCCCSXXTTSXHHHHHHHHHHHCCCXXTTTHHHHHHHHHHHTTSSXXHHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHTTXXHHHHHH CS
   Adaptin_N  300 kavqhldlkifllktdddvsirlkaldlllklvdesNvkeivkeLkkyvkevadedfksklvkaIgrlaekfatdaewvldvllellslsgesvkde 396 
                                                                                                                   
  KOO24146.1    - -------------------------------------------------------------------------------------------------    -
                  ................................................................................................. PP

                  HHHHHHHHHHHSTTTSTTCHHHHCCTCCGXXSHHHHHHHHHHHHHTTTTXTT...HHHHHHCTTTTTTTSXHHHHHHHHHHHHHHHHCXGCC.THX. CS
   Adaptin_N  397 ivevirdliqkvpelheeiiekLaellekieseearaaaiWllGeygelvsntesasdllrslaekfvlesekvklqiltalvKlyltspdketqe. 492 
                                                                         +++llr la ++ +  +++k+ ++ +lv+  +  ++k+ +  
  KOO24146.1 2153 ------------------------------------------------------HVTELLRNLATNPDNRGAIAKAGAIPELVRQLESGSEKSMEMa 2195
                  ......................................................4444555555555555555555544444444433333322223 PP

                  ................HHHHHHHHHHHXXSHHHHHHHHHHH CS
   Adaptin_N  493 ................kliqlvlslatssdlevrdRaveyl 517 
                                   ++q + +l+ s+  +vr+Ra e l
  KOO24146.1 2196 aaglvlislksqaekaTVTQELVKLLASEAESVRQRASEAL 2236
                  33333333333333334444444444444444555554444 PP

  == domain 10  score: 7.9 bits;  conditional E-value: 0.00053
                  TSSXXHHHHHHHHHHHHH..HHHHSCCHHHHHHHHHHHHHTTXXHHHHHHHHHHHHHHHHHSTTTSTTCHHHHCCTCCG.XXSHHHHHH CS
   Adaptin_N  349 kevadedfksklvkaIgr..laekfatdaewvldvllellslsgesvkdeivevirdliqkvpelheeiiekLaellek.ieseearaa 434 
                  +e+ ++++ ++++++++r  l  ++a ++   +  l+ ll +++  +++ +v +++++ ++  e+++++i +L+e+l++  +s++++ a
  KOO24146.1 2537 NEI-TQQYAAAAIESLARdhLDNQVALMKGGAIIPLVALLGTDSVATQEHAVGALLNIASNDVESRDRVIFHLVEVLDTrNASAQMKSA 2624
                  455.4445555555554322444557777778888999999887788999999************************998555555443 PP

  == domain 11  score: -2.4 bits;  conditional E-value: 0.71
                  HHHHHHHHHT-SSHHHHHHHHHHHHHCCCC...CHHCCCCC.HHHHHHHCTT-SSHHHHHHH CS
   Adaptin_N  115 lapaikkllkdrspyvrkkAalailklykk...dpdllrkq.lveeikellsdkdpgvvlaA 172 
                    p + +l++++ p  r  Aa  + +l  +   +++ + +   ++ ++ llsd++++ +++A
  KOO24146.1 2773 AIPSLVTLIHSKLPDTREHAASVLSALAVSrgnNKKMIVQAgGIPALIALLSDTRVLTQRHA 2834
                  45667777788888888888755555554444555555566678999999999998888888 PP

>> V-ATPase_H_C  V-ATPase subunit H
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.1   0.0      0.56     1e+03      46     110 ..      69     132 ..      55     140 .. 0.81
   2 ?    0.1   0.0      0.47   8.5e+02      45     112 ..     194     258 ..     187     262 .. 0.79
   3 ?   -2.5   0.0       2.9   5.2e+03      65     111 ..     295     342 ..     274     348 .. 0.72
   4 ?   -0.8   0.0      0.86   1.5e+03      38     110 ..     433     504 ..     427     508 .. 0.74
   5 ?    5.2   0.1     0.012        22      38     112 ..     721     797 ..     716     801 .. 0.74
   6 ?    1.6   0.0      0.16   2.9e+02      46     113 ..     943    1009 ..     929    1012 .. 0.89
   7 ?    4.7   0.0     0.018        32      38     112 ..    1457    1530 ..    1452    1534 .. 0.90
   8 ?    0.3   0.0      0.39     7e+02      42     110 ..    1626    1693 ..    1616    1699 .. 0.74
   9 ?    2.6   0.0     0.077   1.4e+02      41      95 ..    1874    1927 ..    1866    1937 .. 0.82
  10 ?   -2.0   0.0       2.1   3.7e+03      78     109 ..    2205    2236 ..    2198    2239 .. 0.82
  11 ?    0.0   0.0       0.5   8.9e+02      47     110 ..    2862    2923 ..    2851    2926 .. 0.82

  Alignments for each domain:
  == domain 1  score: -0.1 bits;  conditional E-value: 0.56
  V-ATPase_H_C  46 kLiklleeskdktvlavalnDigelvkllpegkkvleklkaKekimellehedeevkyeALkavq 110
                    L+++l +s ++  ++ a++ ++e++++  + ++ + + +a   +++ll++  ++ + +A  a+ 
    KOO24146.1  69 PLVRVL-SSGSTDAQTSACSALSEIAQHKVSHQAAIVEAGALLPLVKLLKTGSSKAQEQAASALA 132
                   578888.46667778889**********9999999999999999999999888888777766654 PP

  == domain 2  score: 0.1 bits;  conditional E-value: 0.47
  V-ATPase_H_C  45 kkLiklleeskdktvlavalnDigelvkllpegkkvleklkaKekimellehedeevkyeALkavqkl 112
                   + L++ll+     + ++ a++ +++l++  p  ++ ++  ++ + +++ll+  +++ + +A  a+ ++
    KOO24146.1 194 QLLLNLLS---VGKAQMPAAHALAQLARKNPAIQTEISAAGGIAPLLSLLNGVNTDAQVKAAAAIAEM 258
                   55666662...23345668999*****************************88888888888787766 PP

  == domain 3  score: -2.5 bits;  conditional E-value: 2.9
  V-ATPase_H_C  65 nDigelvkllpegkkvleklka.KekimellehedeevkyeALkavqk 111
                     +++l++  +e ++++++l++ K  i +l  ++ ++v+ +A  a+ +
    KOO24146.1 295 GALAQLAHDNRENQDFIARLGGvKIIIPHLGLSSSPDVQTQAAFALAE 342
                   557788888899999999998845555566668899****99888766 PP

  == domain 4  score: -0.8 bits;  conditional E-value: 0.86
  V-ATPase_H_C  38 eknfkllkkLikllee.skdktvlavalnDigelvkllpegkkvleklkaKekimellehedeevkyeALkavq 110
                   ++ +++ + Li+ll+  +kd ++ av  + ++ +  + p++++++++ +  e +++ll+   +e k  AL +++
    KOO24146.1 433 DNLIQITRLLIELLSLgTKDGQTRAV--QVLQTIRAENPSSHQTIADAGEPEPVVDLLKAGIPEAKDYALWSLS 504
                   34478888999999430233454544..45778888899999*******9999999999999999999997766 PP

  == domain 5  score: 5.2 bits;  conditional E-value: 0.012
  V-ATPase_H_C  38 eknfkllkkLiklleeskdktvlavalnDigelvkllpegkkvleklkaKekimelle...hedeevkyeALkavqkl 112
                   +++++++kkL+++l++s  +  +  a+  +++l+++ ++ +k++ + ++   +++ll+   h+ ++ k +A  a+++l
    KOO24146.1 721 SNRVQIIKKLVDMLQDS-GNAAQEQAAAALANLARESEDNRKTIVDANGIVPLLALLDadrHSSPKAKENAVGALKQL 797
                   5679**********644.455567777789999999998888887777766666666533367888888888888776 PP

  == domain 6  score: 1.6 bits;  conditional E-value: 0.16
  V-ATPase_H_C   46 kLiklleeskdktvlavalnDigelvkllpegkkvleklkaKekimellehedeevkyeALkavqkll 113 
                     Li++l+  ++ +v+a a++ +  l+++  + +++++k +a   +++l++ + +  + +A +a+ +l 
    KOO24146.1  943 PLIQCLQ-AASGKVQAYAAHAMFCLAQNNTTTQQLIAKSDAIPPLVALMKRSTPAAQEHATRAIWHLA 1009
                    5899994.6777899*********************************************99987765 PP

  == domain 7  score: 4.7 bits;  conditional E-value: 0.018
  V-ATPase_H_C   38 eknfkllkkLiklleeskdktvlavalnDigelvkllpegkkvleklkaKekimellehedeevkyeALkavqkl 112 
                    e++ ++ k L+ ll  +++   +  a++ +  l+ ++p +  ++ + +a + +++ll++   evk+eA ka+++l
    KOO24146.1 1457 ENQAQIAKYLVGLL-GNQSAGAQRRAAHAVCDLAANHPGSPGIIVNAGAISPLVNLLSNGVLEVKKEAAKALSTL 1530
                    6779999*******.4566777889999******************************************99876 PP

  == domain 8  score: 0.3 bits;  conditional E-value: 0.39
  V-ATPase_H_C   42 kllkkLiklleeskdktvlavalnDigelvkllpegkkvleklkaKekimellehedeevkyeALkavq 110 
                    + ++ L++ll+ s++++ +a a+  ++ + ++ ++ ++v+ + +a + +++ll++  ++ k eA  a+ 
    KOO24146.1 1626 SGIRPLVALLT-SDSTSGQAHAATVLADMGRHSKRNRNVILNESAVAPLIALLTQGTQDAKAEAAGALH 1693
                    56889999994.555555555666666666778889999999999999999999999999999876665 PP

  == domain 9  score: 2.6 bits;  conditional E-value: 0.077
  V-ATPase_H_C   41 fkllkkLiklleeskdktvlavalnDigelvkllpegkkvleklkaKekimelle 95  
                     ++   +++ll  s+dk++ a a+  i++l++ +p+ ++ ++  ++ + +++ll+
    KOO24146.1 1874 SSIATLIVELL-GSTDKQTSAKAARGISRLARAHPSNQDAIAVAGGIQLLVSLLD 1927
                    45666678888.799************************9999998888888876 PP

  == domain 10  score: -2.0 bits;  conditional E-value: 2.1
  V-ATPase_H_C   78 kkvleklkaKekimellehedeevkyeALkav 109 
                    k+  ek  + +++++ll++e e+v+++A +a+
    KOO24146.1 2205 KSQAEKATVTQELVKLLASEAESVRQRASEAL 2236
                    56678888999999999999999999886665 PP

  == domain 11  score: 0.0 bits;  conditional E-value: 0.5
  V-ATPase_H_C   47 LiklleeskdktvlavalnDigelvkllpegkkvleklkaKekimellehedeevkyeALkavq 110 
                    L++ l+   +++++  a+  +++l++  p+ k+++ +l+a + ++el +++ + ++ +A+k ++
    KOO24146.1 2862 LLHALQ-RGNDQTCGFAAACLTNLCRD-PDAKRTMIELGASDALLELARSPATWLRGQAIKMIN 2923
                    455554.45566778888889999998.89999999***********************99876 PP

>> HEAT_EZ  HEAT-like repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.0       1.6   2.8e+03      26      49 ..      20      44 ..      15      46 .. 0.76
   2 !    8.3   0.9    0.0019       3.4       5      55 .]      83     134 ..      66     134 .. 0.92
   3 ?   -3.5   0.5       9.2   1.6e+04       5      30 ..     166     193 ..     165     201 .. 0.51
   4 ?   -1.9   0.2         3   5.3e+03      30      51 ..     233     256 ..     209     256 .. 0.74
   5 ?    3.3   0.0     0.069   1.2e+02      29      53 ..     320     341 ..     308     343 .. 0.85
   6 ?   -3.0   0.0       6.4   1.1e+04      31      52 ..     361     383 ..     360     383 .. 0.81
   7 ?   -3.3   0.0       7.7   1.4e+04       7      37 ..     420     446 ..     419     447 .. 0.71
   8 !   12.0   0.4   0.00013      0.22       2      53 ..     534     589 ..     533     591 .. 0.77
   9 ?    1.9   0.4      0.18   3.3e+02       7      52 ..     625     672 ..     608     672 .. 0.81
  10 !    8.5   0.1    0.0016       2.9      28      55 .]     725     752 ..     719     752 .. 0.94
  11 ?    1.5   0.0      0.26   4.7e+02      33      55 .]     772     797 ..     766     797 .. 0.67
  12 ?    4.0   0.0     0.042        75      25      50 ..     834     859 ..     817     860 .. 0.80
  13 ?   -0.5   0.1         1   1.9e+03       6      41 ..     869     903 ..     868     917 .. 0.55
  14 !    6.4   0.1    0.0072        13       7      52 ..     962    1005 ..     954    1010 .. 0.78
  15 ?    0.7   0.1      0.44   7.9e+02      28      55 .]    1064    1091 ..    1042    1091 .. 0.78
  16 ?   -0.2   0.2      0.88   1.6e+03       7      45 ..    1444    1479 ..    1419    1484 .. 0.76
  17 ?    2.7   0.1       0.1   1.8e+02      29      55 .]    1504    1530 ..    1502    1530 .. 0.91
  18 ?   -2.1   0.0       3.4   6.2e+03      30      41 ..    1628    1639 ..    1601    1650 .. 0.72
  19 ?    1.4   0.1      0.28     5e+02      29      52 ..    1669    1692 ..    1667    1695 .. 0.92
  20 !   14.5   0.7   2.1e-05     0.038       6      55 .]    1687    1737 ..    1682    1737 .. 0.89
  21 !    8.7   0.7    0.0014       2.4       1      42 [.    1767    1809 ..    1767    1820 .. 0.89
  22 ?   -1.6   0.2       2.3   4.1e+03       7      54 ..    1819    1864 ..    1813    1867 .. 0.64
  23 ?   -0.7   0.1       1.3   2.3e+03       5      55 .]    1856    1902 ..    1852    1902 .. 0.57
  24 ?    0.7   0.2      0.45   8.2e+02      29      55 .]    2017    2042 ..    1990    2083 .. 0.61
  25 ?   -3.0   0.0       6.4   1.1e+04      40      54 ..    2109    2123 ..    2099    2124 .. 0.73
  26 ?    1.0   0.0      0.37   6.6e+02      22      50 ..    2169    2198 ..    2150    2200 .. 0.66
  27 ?    2.9   0.1     0.091   1.6e+02      24      53 ..    2212    2237 ..    2208    2237 .. 0.81
  28 ?    0.0   0.0      0.71   1.3e+03      33      55 .]    2260    2286 ..    2258    2311 .. 0.67
  29 ?   -2.2   0.4       3.6   6.4e+03      44      55 .]    2358    2369 ..    2344    2408 .. 0.60
  30 ?    3.1   0.2     0.078   1.4e+02      24      54 ..    2520    2550 ..    2503    2551 .. 0.74
  31 ?    0.6   0.0      0.46   8.3e+02      33      52 ..    2571    2590 ..    2567    2593 .. 0.89
  32 !    7.2   0.3    0.0041       7.4       2      52 ..    2666    2714 ..    2665    2716 .. 0.73
  33 !   11.4   0.2    0.0002      0.37       2      49 ..    2787    2836 ..    2786    2838 .. 0.89

  Alignments for each domain:
  == domain 1  score: -1.0 bits;  conditional E-value: 1.6
     HEAT_EZ 26 vpeilpaLlalLnddsdeV.RaaAa 49
                vp +++ L++ L+d+++++  + Aa
  KOO24146.1 20 VPTLIKDLVKKLSDPNSSIvEGGAA 44
                6778888999999999965477765 PP

  == domain 2  score: 8.3 bits;  conditional E-value: 0.0019
     HEAT_EZ   5 raAawaLGrlaggepellqp.lvpeilpaLlalLnddsdeVRaaAagaLgnl 55 
                  +A++aL+++a++   +++  +   +l +L++lL++ s++ +++Aa aL+++
  KOO24146.1  83 TSACSALSEIAQHKVSHQAAiVEAGALLPLVKLLKTGSSKAQEQAASALAAI 134
                 68999**99999999998888999*************************986 PP

  == domain 3  score: -3.5 bits;  conditional E-value: 9.2
     HEAT_EZ   5 raAawaLGrlaggepellqp..lvpeil 30 
                 ++Aa +L+++a+  + + q+  +   ++
  KOO24146.1 166 ASAAKGLANIASFDKVAGQDaiAAAGAI 193
                 6788899885554444444433333444 PP

  == domain 4  score: -1.9 bits;  conditional E-value: 3
     HEAT_EZ  30 lpaLlalLnd.dsd.eVRaaAaga 51 
                 +++Ll+lLn    d  V+aaAa+a
  KOO24146.1 233 IAPLLSLLNGvNTDaQVKAAAAIA 256
                 566777776664444999999987 PP

  == domain 5  score: 3.3 bits;  conditional E-value: 0.069
     HEAT_EZ  29 ilpaLlalLnddsdeVRaaAagaLg 53 
                 i+p L+    ++s++V+++Aa aL+
  KOO24146.1 320 IIPHLG---LSSSPDVQTQAAFALA 341
                 777788...679************7 PP

  == domain 6  score: -3.0 bits;  conditional E-value: 6.4
     HEAT_EZ  31 paLlalLnddsd.eVRaaAagaL 52 
                  +L+ l ++++  eV+  +agaL
  KOO24146.1 361 SQLAGLIKNSQHaEVKSHVAGAL 383
                 6788888777777********98 PP

  == domain 7  score: -3.3 bits;  conditional E-value: 7.7
     HEAT_EZ   7 AawaLGrlaggepellqplvpeilpaLlalL 37 
                 Aa aL+++ +++ + l     +i ++L+ lL
  KOO24146.1 420 AAKALASIGFENQDNLI----QITRLLIELL 446
                 78888877788888888....6666666665 PP

  == domain 8  score: 12.0 bits;  conditional E-value: 0.00013
     HEAT_EZ   2 rvRraAawaLGrlaggepel.........lqplvpeilpaLlalLnddsdeVRaaAagaLg 53 
                 r+R+ Aa+aL+ la +++++         ++pl+ +++p        +s +VR++Aa aL+
  KOO24146.1 534 RNREEAAAALAKLAHNNDDTrsqitkeggIKPLIRQLVPGPS-----SSELVRQNAAAALA 589
                 89********99********8888855555555555555555.....66699*******97 PP

  == domain 9  score: 1.9 bits;  conditional E-value: 0.18
     HEAT_EZ   7 AawaLGr.laggepellqplvpeilpaLlalLnddsd...eVRaaAagaL 52 
                 + +aL+r + ++e+ + + +   ++++L+alL  d +   e ++ AagaL
  KOO24146.1 625 VSMALARlAKEHEATQTAIAEAGAIAPLVALL--DGKeglEAQEEAAGAL 672
                 56899997777777777779999*******99..4443457799998887 PP

  == domain 10  score: 8.5 bits;  conditional E-value: 0.0016
     HEAT_EZ  28 eilpaLlalLnddsdeVRaaAagaLgnl 55 
                 +i++ L+ +L+d+  + +++Aa aL+nl
  KOO24146.1 725 QIIKKLVDMLQDSGNAAQEQAAAALANL 752
                 8************************997 PP

  == domain 11  score: 1.5 bits;  conditional E-value: 0.26
     HEAT_EZ  33 LlalL.nd..dsdeVRaaAagaLgnl 55 
                 LlalL  d  +s++ +++A+gaL +l
  KOO24146.1 772 LLALLdADrhSSPKAKENAVGALKQL 797
                 344664553366677********886 PP

  == domain 12  score: 4.0 bits;  conditional E-value: 0.042
     HEAT_EZ  25 lvpeilpaLlalLnddsdeVRaaAag 50 
                 + + ++++L+a+L ++s+  +a+Aag
  KOO24146.1 834 AAEGAIAPLVAMLGSPSAQMQANAAG 859
                 67789*******************98 PP

  == domain 13  score: -0.5 bits;  conditional E-value: 1
     HEAT_EZ   6 aAawaLGr..laggepellqp..lvpeilpaLlalLndds 41 
                 +A+waL++  ++  +++++++   ++ ++ +L+   ++ds
  KOO24146.1 869 SALWALSTdnAP--NKDTIAKlgGIDPLVGLLI---TSDS 903
                 799999988655..4444443335555555555...4444 PP

  == domain 14  score: 6.4 bits;  conditional E-value: 0.0072
     HEAT_EZ    7 AawaLGrlaggepellqp.lvpeilpaLlalLnddsdeVRaaAagaL 52  
                  A  +L   a+++  ++q+ + ++++p+L+al++ + ++ ++ A +a+
  KOO24146.1  962 AMFCL---AQNNTTTQQLiAKSDAIPPLVALMKRSTPAAQEHATRAI 1005
                  33345...59999999999*************999997766666664 PP

  == domain 15  score: 0.7 bits;  conditional E-value: 0.44
     HEAT_EZ   28 eilpaLlalLnddsdeVRaaAagaLgnl 55  
                    +++L++lL++ s+  +++Aa aL+ +
  KOO24146.1 1064 GGIKPLVKLLSHASPGAQKQAASALAEI 1091
                  55899*****777777799999999865 PP

  == domain 16  score: -0.2 bits;  conditional E-value: 0.88
     HEAT_EZ    7 AawaLGrlaggepellqplvpeilpaLlalLnddsd.eVR 45  
                  Aa aL+rla     + + ++ +i ++L+ lL + s+ + R
  KOO24146.1 1444 AADALARLA----IDSAENQAQIAKYLVGLLGNQSAgAQR 1479
                  888998877....455566778888888888554444444 PP

  == domain 17  score: 2.7 bits;  conditional E-value: 0.1
     HEAT_EZ   29 ilpaLlalLnddsdeVRaaAagaLgnl 55  
                  ++ +L++lL++   eV++ Aa aL+ l
  KOO24146.1 1504 AISPLVNLLSNGVLEVKKEAAKALSTL 1530
                  6889********************975 PP

  == domain 18  score: -2.1 bits;  conditional E-value: 3.4
     HEAT_EZ   30 lpaLlalLndds 41  
                  +++L+alL++ds
  KOO24146.1 1628 IRPLVALLTSDS 1639
                  567888887776 PP

  == domain 19  score: 1.4 bits;  conditional E-value: 0.28
     HEAT_EZ   29 ilpaLlalLnddsdeVRaaAagaL 52  
                  ++++L+alL+   ++ +a AagaL
  KOO24146.1 1669 AVAPLIALLTQGTQDAKAEAAGAL 1692
                  799********************9 PP

  == domain 20  score: 14.5 bits;  conditional E-value: 2.1e-05
     HEAT_EZ    6 aAawaLGrlaggepellqp.lvpeilpaLlalLnddsdeVRaaAagaLgnl 55  
                   Aa aL +l +g+pe++++ +   ++++L+alL  d+ + R++Aaga+++l
  KOO24146.1 1687 EAAGALHSLSAGNPETQKLiAEAGAIKPLVALLGEDHNLARKKAAGAIAAL 1737
                  56667755779************************************9876 PP

  == domain 21  score: 8.7 bits;  conditional E-value: 0.0014
     HEAT_EZ    1 wrvRraAawaLGr.laggepellqplvpeilpaLlalLnddsd 42  
                  ++vR+ Aa+aL+  ++ +++++++++ +  +++L+ lL+ d +
  KOO24146.1 1767 DEVRAEAAAALAVlALDNRKNQDKLAADGGIAPLVGLLKEDTS 1809
                  589********99*999*********************77765 PP

  == domain 22  score: -1.6 bits;  conditional E-value: 2.3
     HEAT_EZ    7 AawaLGr..laggepellqplvpeilpaLlalLnddsdeVRaaAagaLgn 54  
                  A++ L+    +++ + ++++ +  ++++L+  L   s + ++++agaL++
  KOO24146.1 1819 ALMSLAKkhYENQVAVAQAGGIAPLVACLG--L--ASTRAQEQSAGALAA 1864
                  666666577777777777777777777777..3..344556666666654 PP

  == domain 23  score: -0.7 bits;  conditional E-value: 1.3
     HEAT_EZ    5 raAawaLGrlaggepellqplvpeilpaLlalLnddsdeVRaaAagaLgnl 55  
                  +  a aL++la  ++   +   + i+     lL + ++ + a+Aa+ +++l
  KOO24146.1 1856 EQSAGALAALALDNKVNESSIATLIV----ELLGSTDKQTSAKAARGISRL 1902
                  55566666656334444443444444....555555557799999999886 PP

  == domain 24  score: 0.7 bits;  conditional E-value: 0.45
     HEAT_EZ   29 ilpaLlalLnddsdeVRaaAagaLgnl 55  
                   +p+L+alL+  ++eV   +agaL+ l
  KOO24146.1 2017 GIPLLIALLK-GHPEVHRDVAGALSSL 2042
                  5666666664.3456655555555543 PP

  == domain 25  score: -3.0 bits;  conditional E-value: 6.4
     HEAT_EZ   40 dsdeVRaaAagaLgn 54  
                    d+ +a+AagaL  
  KOO24146.1 2109 GTDDAKAQAAGALQT 2123
                  56788999****975 PP

  == domain 26  score: 1.0 bits;  conditional E-value: 0.37
     HEAT_EZ   22 lqplvpeilpaLlalLnddsd.eVRaaAag 50  
                   + +   ++p+L++ L++ s  +   aAag
  KOO24146.1 2169 GAIAKAGAIPELVRQLESGSEkSMEMAAAG 2198
                  444556678888888888555366777776 PP

  == domain 27  score: 2.9 bits;  conditional E-value: 0.091
     HEAT_EZ   24 plvpeilpaLlalLnddsd.eVRaaAagaLg 53  
                  ++ +e++++L+     +++ +VR+ A  aL+
  KOO24146.1 2212 TVTQELVKLLA-----SEAeSVRQRASEALR 2237
                  56678888888.....8887*******9995 PP

  == domain 28  score: 0.0 bits;  conditional E-value: 0.71
     HEAT_EZ   33 LlalLnd...dsd.eVRaaAagaLgnl 55  
                  L++lL+d   d   e +++A++ L+ +
  KOO24146.1 2260 LVNLLKDglkDGRvEAQEYALWSLSSI 2286
                  666666655333334477777777765 PP

  == domain 29  score: -2.2 bits;  conditional E-value: 3.6
     HEAT_EZ   44 VRaaAagaLgnl 55  
                   +  Aa aL++l
  KOO24146.1 2358 AKVHAADALAQL 2369
                  555555555443 PP

  == domain 30  score: 3.1 bits;  conditional E-value: 0.078
     HEAT_EZ   24 plvpeilpaLlalLnddsdeVRaaAagaLgn 54  
                   ++   lp+L+ lL+d +  ++++Aa a++ 
  KOO24146.1 2520 IALAGGLPPLVELLSDANEITQQYAAAAIES 2550
                  55666799******88888889999999876 PP

  == domain 31  score: 0.6 bits;  conditional E-value: 0.46
     HEAT_EZ   33 LlalLnddsdeVRaaAagaL 52  
                  L+alL +ds ++++ A+gaL
  KOO24146.1 2571 LVALLGTDSVATQEHAVGAL 2590
                  8999*9999999*******9 PP

  == domain 32  score: 7.2 bits;  conditional E-value: 0.0041
     HEAT_EZ    2 rvRraAaw.aLGrlaggepellqplvpeilpaLlalLnddsdeVRaaAagaL 52  
                  ++R+aA++  L+r   g+ +    + ++ +p+L+a+L+ +s+e ++ AagaL
  KOO24146.1 2666 QERAAAVLcDLAR---GAENKETIVAEKGVPPLVAMLSCPSPEAQTHAAGAL 2714
                  5677777777764...44444444566999*******7777788*******9 PP

  == domain 33  score: 11.4 bits;  conditional E-value: 0.0002
     HEAT_EZ    2 rvRraAawaLGrlaggepellqp.lvpeilpaLlalLnddsdeV.RaaAa 49  
                    R++Aa++L++la+ +++  +  ++   +paL+alL+d   ++ R aA+
  KOO24146.1 2787 DTREHAASVLSALAVSRGNNKKMiVQAGGIPALIALLSDTRVLTqRHAAC 2836
                  67******************9998999**********9988866699999 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (3005 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       664  (0.037035); expected 358.6 (0.02)
Passed bias filter:                      400  (0.0223102); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 1.57u 0.31s 00:00:01.88 Elapsed: 00:00:00.57
# Mc/sec: 15993.21
//
Query:       KOO24147.1  [L=187]
Description: exosome complex component csl4 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      3e-08   34.2   0.1      0.002   18.7   0.0    2.5  2  EXOSC1    Exosome component EXOSC1/CSL4
     0.0015   18.3   0.2     0.0069   16.2   0.0    2.2  2  ECR1_N    Exosome complex exonuclease RRP4 N-terminal region


Domain annotation for each model (and alignments):
>> EXOSC1  Exosome component EXOSC1/CSL4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.2   0.0   1.2e-05       0.1       4      27 ..      60      83 ..      57      92 .. 0.91
   2 !   18.7   0.0   2.2e-07     0.002      74     109 .]      94     132 ..      84     132 .. 0.81

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 1.2e-05
                TT-EEEEEEEEEESSEEEEEEEEE CS
      EXOSC1  4 egdvVLarvtrlrkkqalveilsv 27
                +gd V +r+tr++ + a v+ils 
  KOO24147.1 60 VGDTVVGRITRITPRLAHVDILSL 83
                69********************96 PP

  == domain 2  score: 18.7 bits;  conditional E-value: 2.2e-07
                 EEEEECCCTECCSSSTT-...GGCTEECTTEEEEEEEEC CS
      EXOSC1  74 kaiirsqdvRatekdrvk...viemfrpGDIvraqviSl 109
                  +i+r +dvR +e+       +  ++rpGD+v a v+Sl
  KOO24147.1  94 AGILRREDVRPAEHRTAEmleMHRCVRPGDVVLAAVLSL 132
                 599*******9886655525567789***********97 PP

>> ECR1_N  Exosome complex exonuclease RRP4 N-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.0   7.7e-07    0.0069       1      34 [.       6      38 ..       6      40 .. 0.95
   2 ?   -1.8   0.0      0.31   2.8e+03       3       8 ..     120     125 ..     119     128 .. 0.79

  Alignments for each domain:
  == domain 1  score: 16.2 bits;  conditional E-value: 7.7e-07
                EE-TT-EEEETTTSEE-TTEEEETTEEEESSSEE CS
      ECR1_N  1 iVtPGevlttdeefmrGhGTYvrggtiyAsvaGt 34
                iV+PG+ l  ++   +G  T+v +g+++AsvaG+
  KOO24147.1  6 IVVPGDKLPASTSADAGS-TFVWDGALRASVAGI 38
                9*******9999999998.**************7 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 0.31
                 -TT-EE CS
      ECR1_N   3 tPGevl 8  
                  PG+v+
  KOO24147.1 120 RPGDVV 125
                 5***98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (187 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       351  (0.0195772); expected 358.6 (0.02)
Passed bias filter:                      286  (0.0159518); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.40u 0.28s 00:00:00.68 Elapsed: 00:00:00.44
# Mc/sec: 1274.10
//
Query:       KOO24148.1  [L=373]
Description: alpha-ketoglutarate-dependent taurine dioxygenase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.6e-37  128.6   0.1    4.7e-37  128.2   0.1    1.1  1  TauD      Taurine catabolism dioxygenase TauD, TfdA family


Domain annotation for each model (and alignments):
>> TauD  Taurine catabolism dioxygenase TauD, TfdA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  128.2   0.1   2.6e-41   4.7e-37      10     266 ..      59     329 ..      48     331 .. 0.86

  Alignments for each domain:
  == domain 1  score: 128.2 bits;  conditional E-value: 2.6e-41
        TauD  10 gae..gvdlsdleslddelkeelrell.aeygvvvfrgfpl..speqqlefarrfG.....plygtpgrgtntkygevldvssvyesadianlayttll 98 
                 g e   vdls+   +++++ e+l+++  +  g++vf+++ l  +  ++++f + +      +++ +   +  ++ +evl  +    +a++      + +
  KOO24148.1  59 GVElpCVDLSQQ--FSADEIETLKQACdDAGGIAVFTNQRLemTIHDLVRFGQQIAnsddtEIEPHSTVKGHRDAPEVLEIQR---EANAQV--VFGEN 150
                 555555677774..7877899****99677799******9999************7666777777777788888888888555...333333..33356 PP

        TauD  99 wHtDlsylesppgiqlLhcleapatG.GetpfvDgraaynaLpeelpellegltavrvyyhyrg...........gglrteqelpavdkhprtghpvvr 185
                 wH+D+s+l + +++++L+ +++p  G  +t+f++++ ay+aL+++++  l  l+a ++  + +g           +g +   + +    +  + +pvv 
  KOO24148.1 151 WHSDNSFLARTASYSILRGVVVPRLGvNDTLFSSTQDAYDALSPTMQGMLLELNAFHSANRAYGaghsgnsraamEGTGMVMRTDTNVLKEDVLQPVVV 249
                 ***************************************************************9**********9666666666677788899****** PP

        TauD 186 thpvltgrkallvnppfatrieglgtpeskelldaleelledpeftyrfqwqeGdlvifdNrrvlHgrtafdegeeRhllr 266
                 +hp  tgr+ l+v+p f+tri+g++ +es  ll++l+e++++pef+ r+ w+++++v++dNr+++H   a d  ++R ++r
  KOO24148.1 250 VHPR-TGRRGLYVSPTFTTRIDGMHADESVSLLRFLYEWIARPEFCTRVSWRPNQVVMWDNRALAHKGLADDVSQPRVVQR 329
                 ***5.*************************************************************998655556777776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (373 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       349  (0.0194657); expected 358.6 (0.02)
Passed bias filter:                      316  (0.0176251); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.24s 00:00:00.73 Elapsed: 00:00:00.42
# Mc/sec: 2636.31
//
Query:       KOO24149.1  [L=66]
Description: hypothetical protein Ctob_005127 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (66 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       178  (0.00992805); expected 358.6 (0.02)
Passed bias filter:                      129  (0.00719505); expected 358.6 (0.02)
Passed Vit filter:                         8  (0.000446204); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.25s 00:00:00.60 Elapsed: 00:00:00.41
# Mc/sec: 479.45
//
Query:       KOO24150.1  [L=191]
Description: rab-like protein 5 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.7e-11   44.4   0.0    2.4e-11   43.9   0.0    1.2  1  Roc        Ras of Complex, Roc, domain of DAPkinase
    2.4e-08   33.7   0.0    3.2e-08   33.4   0.0    1.3  1  Ras        Ras family
    0.00047   19.7   0.0    0.00074   19.0   0.0    1.3  1  Arf        ADP-ribosylation factor family
  ------ inclusion threshold ------
      0.011   15.1   0.0      0.024   14.0   0.0    1.6  1  Gtr1_RagA  Gtr1/RagA G protein conserved region
      0.093   13.1   0.0       0.11   12.9   0.0    1.4  1  AAA        ATPase family associated with various cellular act


Domain annotation for each model (and alignments):
>> Roc  Ras of Complex, Roc, domain of DAPkinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.9   0.0   6.8e-15   2.4e-11       1     113 [.       7     125 ..       7     130 .. 0.77

  Alignments for each domain:
  == domain 1  score: 43.9 bits;  conditional E-value: 6.8e-15
                 EEEEESSTTSSHHHHHHCHCT-CCC-E.....EETTTTEEEEEEECGGSGGCTTBTTTTCEEEEEEEE-SGGCTTTT-HHHHCTSCEEEEEEE...GHH CS
         Roc   1 KvvlvGdsgvGKtsllkrfvedkfsek.....ekstigvdfltkevtkikgvendkkvkkvklniWDtaGqerfrslhplylreaalailvyd...srs 91 
                 Kv+++G ++ GKt +++ +  ++         +++t g+ +l+ e +  +g    +k  k+++++WD +G  ++++  p  lr+a  ++lvyd   +++
  KOO24150.1   7 KVLVIGPKRCGKTRIADFLAGHSAAAApsfevYNPTKGARILEFEQVAASG----RKNMKMSVQLWDCSGDRQYENCWPAILRDAVGVVLVYDptiKEQ 101
                 99**************99998777543223338899999988755433333....2334699*******************************876667 PP

                 HHCHHHHHHHHHHHCS..SS-EEE CS
         Roc  92 senlkeWlkelkkvag..kspvil 113
                 +++++ W+k  +++ g  +s+v+l
  KOO24150.1 102 EKDIELWYKTYTSRLGlkDSQVLL 125
                 7899*****999886532445555 PP

>> Ras  Ras family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.4   0.0   8.8e-12   3.2e-08       1     110 [.       7     126 ..       7     164 .. 0.79

  Alignments for each domain:
  == domain 1  score: 33.4 bits;  conditional E-value: 8.8e-12
                 EEEEEESTTSSHHHHH...HHHHHSSCS..SSCTTTSSEEEEEEEEEET....TEEEEEEEEEETTSGGGHHHHHHHHTTESEEEEEEETTBHHHHHTH CS
         Ras   1 KlvlvGdsavGKtsll...lrfvkdkFk..eeyesTigvdfytkeievd....gkevkleiwDTAGqeefkslrelyyrdaegillvyditsresfenv 90 
                 K++++G + +GKt +      +     +  e y++T g+  ++ e  +     + ++++++wD  G  ++++  ++ +rda g++lvyd t +e  +++
  KOO24150.1   7 KVLVIGPKRCGKTRIAdflAGHSAAAAPsfEVYNPTKGARILEFEQVAAsgrkNMKMSVQLWDCSGDRQYENCWPAILRDAVGVVLVYDPTIKEQEKDI 105
                 89***********97511133333322222689***99985543333322444778899**************************************** PP

                 HHHHHHHHHHST.TTSEEEEE CS
         Ras  91 kkwveeikrvae.envpivLv 110
                 + w++  ++    ++ +++L 
  KOO24150.1 106 ELWYKTYTSRLGlKDSQVLLF 126
                 ****99888777666666665 PP

>> Arf  ADP-ribosylation factor family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.0   0.0   2.1e-07   0.00074      15     122 ..       6     127 ..       2     144 .. 0.79

  Alignments for each domain:
  == domain 1  score: 19.0 bits;  conditional E-value: 2.1e-07
                 EEEEEEESTTSSHHHHHHHHHHSSCEE......CSSSSSEEEEEEEE......TTEE..EEEEEE-SSGGGGGGGGGGCTTESEEEEEEETT-CTTHHH CS
         Arf  15 lrilllGLDnaGKtTilkklkleelvt......tvPTigfnveelei......knlk..ftvwDvGGqeklRplWknYfektdavifvvDsadreRlee 99 
                 +++l++G    GKt i   l  ++ +         PT g  + e e       kn+k  +++wD  G ++  ++W   +++  +v+ v D + +e  ++
  KOO24150.1   6 AKVLVIGPKRCGKTRIADFLAGHSAAAapsfevYNPTKGARILEFEQvaasgrKNMKmsVQLWDCSGDRQYENCWPAILRDAVGVVLVYDPTIKEQEKD 104
                 79**************9999888766556666689****99866665566888666511678****************************988877666 PP

                 HHHHHHHHCTSGCCTTSEEEEEE CS
         Arf 100 akeeLkalleeeelkevallvla 122
                  +   k+ +++  lk+ ++l++a
  KOO24150.1 105 IELWYKTYTSRLGLKDSQVLLFA 127
                 66666666666666666666665 PP

>> Gtr1_RagA  Gtr1/RagA G protein conserved region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.0   6.7e-06     0.024       1     100 [.       7     110 ..       7     129 .. 0.71

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 6.7e-06
   Gtr1_RagA   1 kvLLmGksgsGKtsmrsii..........FdnylardtlrlgatidveksevrflgnltlnlwDcgGqeafveeylssqkeeifrnvgvliyVfDvesr 89 
                 kvL +G+++ GKt + + +          F+ y ++   r+    +v  s  + + ++ ++lwDc G +++ +         i+r+   ++ V D + +
  KOO24150.1   7 KVLVIGPKRCGKTRIADFLaghsaaaapsFEVYNPTKGARILEFEQVAASGRK-NMKMSVQLWDCSGDRQYENCW-----PAILRDAVGVVLVYDPTIK 99 
                 899**********9998875555555555777777777777777677777764.668999*******99886553.....4555555555567777766 PP

   Gtr1_RagA  90 eleedletlke 100
                 e e+d+e + +
  KOO24150.1 100 EQEKDIELWYK 110
                 77777665555 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   3.2e-05      0.11       1      27 [.       8      36 ..       8     167 .. 0.70

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 3.2e-05
                EEEESSTTSSHHHHHHHHHHHH.....THEEE CS
         AAA  1 vllyGppGtGKTllakavakel.....gvefl 27
                vl++Gp+ +GKT +a  +a ++     +   +
  KOO24150.1  8 VLVIGPKRCGKTRIADFLAGHSaaaapS---F 36
                799****************996332221...2 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (191 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       424  (0.0236488); expected 358.6 (0.02)
Passed bias filter:                      402  (0.0224218); expected 358.6 (0.02)
Passed Vit filter:                        49  (0.002733); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.45u 0.26s 00:00:00.71 Elapsed: 00:00:00.42
# Mc/sec: 1359.69
//
Query:       KOO24151.1  [L=368]
Description: hypothetical protein Ctob_005125 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
  ------ inclusion threshold ------
      0.028   14.6   1.0      0.043   14.0   1.0    1.2  1  Tropomyosin_1  Tropomyosin like
      0.068   11.4   0.6       0.11   10.6   0.6    1.2  1  COG6           Conserved oligomeric complex COG6
       0.24   11.8   2.4         11    6.5   0.1    2.2  2  CCDC53         Subunit CCDC53 of WASH complex
        0.4   10.9   2.4       0.73   10.1   2.4    1.3  1  TMF_TATA_bd    TATA element modulatory factor 1 TATA binding
       0.66   10.1   7.2       0.28   11.3   4.4    1.8  2  MbeD_MobD      MbeD/MobD like


Domain annotation for each model (and alignments):
>> Tropomyosin_1  Tropomyosin like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   1.0   1.2e-05     0.043       4      64 ..     204     264 ..     201     280 .. 0.87

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 1.2e-05
  Tropomyosin_1   4 sLkleaeeaqekaeeleekvKeleqenlekeqeiksLtkknqqleeevekleeklkeakek 64 
                     L+ e + ++ +  el+e+++e++q + +    + +L+++++ le+e   le  l+ + + 
     KOO24151.1 204 RLQFELQRWHSQWLELNESLREAQQARASSQARVGELSHRVESLEAERIALEVILHAHDAL 264
                    689999****************************************988888777766555 PP

>> COG6  Conserved oligomeric complex COG6
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.6   3.2e-05      0.11      22      92 ..     185     255 ..     182     266 .. 0.94

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 3.2e-05
        COG6  22 sdiekellkineefleefqpvaeqLkriesdveklnelcdemkkklssakeetsdlleeaeeLkeekkkle 92 
                 + i ++l ++  + l+ +q+++ +L+r +s+  +lne+  e +++  s++++ ++l + +e+L++e+ +le
  KOO24151.1 185 GRIRSRLAQACATTLSMSQRLQFELQRWHSQWLELNESLREAQQARASSQARVGELSHRVESLEAERIALE 255
                 67999999999*******************************************************98776 PP

>> CCDC53  Subunit CCDC53 of WASH complex
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.1   0.5     0.008        29      59      94 ..      50      84 ..      32     101 .. 0.50
   2 ?    6.5   0.1     0.003        11      21      90 ..     235     310 ..     229     349 .. 0.66

  Alignments for each domain:
  == domain 1  score: 5.1 bits;  conditional E-value: 0.008
      CCDC53 59 eastsddnaarkgppppppsseaaaaaaqaeeasqa 94
                +a+++d+ ++ ++ pp+pps + aaa++ ++++s+ 
  KOO24151.1 50 AAAHNDA-NKMPPMPPQPPSRPSAAASSGPPPPSHI 84
                2333333.3333333334444444444444444433 PP

  == domain 2  score: 6.5 bits;  conditional E-value: 0.003
      CCDC53  21 ekLvevekrlqrleitlalLEakLsSipgleeveaeaaeastsddn......................aarkgppppppsseaaaaaaqaee 90 
                  ++ e+++r++ le++   LE  L + + l++  +++a+a  ++++                      +                +  + ++
  KOO24151.1 235 ARVGELSHRVESLEAERIALEVILHAHDALTDRAVAEADARVNTSSsfdltlsragesrsesrsesrsE----------------SRVPLPP 310
                 678899**********************99999998887777777667777655443333333332221................2222222 PP

>> TMF_TATA_bd  TATA element modulatory factor 1 TATA binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   2.4    0.0002      0.73       8      79 ..     196     267 ..     190     271 .. 0.89

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.0002
  TMF_TATA_bd   8 gpsvqlverlsseirrlEgElaslkeelerleaerdeareeivklmkeneelkelkkeleelekeleelqer 79 
                   ++ ++ +rl+ e++r  ++  +l+e+l + ++ r + ++ + +l++++e+l+++   le +    ++l++r
   KOO24151.1 196 ATTLSMSQRLQFELQRWHSQWLELNESLREAQQARASSQARVGELSHRVESLEAERIALEVILHAHDALTDR 267
                  56778999**********************************************999998887777777766 PP

>> MbeD_MobD  MbeD/MobD like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.7   0.0       3.8   1.4e+04      49      62 ..      22      35 ..      19      36 .. 0.63
   2 ?   11.3   4.4   7.8e-05      0.28      22      62 ..     208     248 ..     198     253 .. 0.89

  Alignments for each domain:
  == domain 1  score: -3.7 bits;  conditional E-value: 3.8
   MbeD_MobD 49 eqvtgLsqQVesLs 62
                 q ++L + V +L+
  KOO24151.1 22 RQLMQLPRPVGRLN 35
                56667777666665 PP

  == domain 2  score: 11.3 bits;  conditional E-value: 7.8e-05
   MbeD_MobD  22 rlqeWesafaelqrmfeltqrenaaLseqvtgLsqQVesLs 62 
                  lq W s + el +     q+ +a  +++v +Ls+ VesL 
  KOO24151.1 208 ELQRWHSQWLELNESLREAQQARASSQARVGELSHRVESLE 248
                 6899***********************************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (368 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       793  (0.04423); expected 358.6 (0.02)
Passed bias filter:                      482  (0.0268838); expected 358.6 (0.02)
Passed Vit filter:                        77  (0.00429472); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.49u 0.25s 00:00:00.74 Elapsed: 00:00:00.40
# Mc/sec: 2760.25
//
Query:       KOO24152.1  [L=337]
Description: spermatogenesis-associated protein 17-like protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      1e-05   24.9   9.4      0.045   13.6   0.6    3.7  3  IQ        IQ calmodulin-binding motif


Domain annotation for each model (and alignments):
>> IQ  IQ calmodulin-binding motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.6   0.6   2.5e-06     0.045       2      17 ..      32      47 ..      31      49 .. 0.91
   2 ?    1.3   1.2     0.021   3.8e+02      10      20 ..      63      73 ..      62      74 .. 0.83
   3 !   13.1   0.0   3.5e-06     0.063       4      20 ..      93     109 ..      90     110 .. 0.90

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 2.5e-06
                HHHHHHHHHHHHHHHH CS
          IQ  2 kaaikIQaawRGylaR 17
                +a +++Q+awRG ++R
  KOO24152.1 32 AACTRLQSAWRGRMTR 47
                599***********99 PP

  == domain 2  score: 1.3 bits;  conditional E-value: 0.021
                HHHHHHHHHHH CS
          IQ 10 awRGylaRkry 20
                  RG+l R+r 
  KOO24152.1 63 IARGHLGRQRA 73
                68******996 PP

  == domain 3  score: 13.1 bits;  conditional E-value: 3.5e-06
                 HHHHHHHHHHHHHHHHH CS
          IQ   4 aikIQaawRGylaRkry 20 
                 a++IQ ++RG+  Rk++
  KOO24152.1  93 ATTIQLRFRGFHSRKYL 109
                 9**************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (337 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1024  (0.0571142); expected 358.6 (0.02)
Passed bias filter:                      649  (0.0361983); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.26s 00:00:00.75 Elapsed: 00:00:00.41
# Mc/sec: 2478.74
//
Query:       KOO24153.1  [L=635]
Description: cgmp-dependent protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.1e-54  182.4   1.3    6.5e-19   67.8   0.0    5.4  5  cNMP_binding  Cyclic nucleotide-binding domain
  ------ inclusion threshold ------
      0.025   14.3   3.2       0.13   11.9   0.2    3.1  3  Cupin_2       Cupin domain
      0.098   12.1   0.0         10    5.5   0.0    2.7  3  DUF4846       Domain of unknown function (4846)
       0.12   12.4   0.1       0.31   11.0   0.0    1.7  2  R2K_3         ATP-grasp domain, R2K clade family 3


Domain annotation for each model (and alignments):
>> cNMP_binding  Cyclic nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.3   0.0    0.0022       9.9       6      34 ..       8      41 ..       4      49 .. 0.72
   2 !   26.2   0.0   1.3e-09     6e-06      41      85 ..      94     139 ..      80     143 .. 0.83
   3 !   54.7   0.0   1.7e-18   7.8e-15       2      85 ..     179     258 ..     178     260 .. 0.97
   4 !   67.8   0.0   1.5e-22   6.5e-19       2      86 ..     299     378 ..     298     379 .. 0.93
   5 !   21.2   0.0   5.1e-08   0.00023       3      36 ..     419     452 ..     417     467 .. 0.84

  Alignments for each domain:
  == domain 1  score: 6.3 bits;  conditional E-value: 0.0022
                  TT-EEE-TTS.....B-SEEEEEEES-EEEEEEE CS
  cNMP_binding  6 agevifrqGd.....padslyivlsGevrvyrls 34
                  ++ev+++qG+     + d++y+v sG++ ++r  
    KOO24153.1  8 RDEVVIQQGEmlsggATDNFYVVDSGTFHIFRDM 41
                  6778888877333224589**********98654 PP

  == domain 2  score: 26.2 bits;  conditional E-value: 1.3e-09
                   EEEEE-TTEEESHHHHHHTS--SSEEEESST.EEEEEEEHHHHHHH CS
  cNMP_binding  41 vlavlgpGdlfGelalltgeprtatvvAltd.sellalprddflel 85 
                   ++    +Gd fGel+l++++pr+a+vv  +d ++l+alpr+  +e+
    KOO24153.1  94 LVQMRERGDAFGELGLMYNQPRQASVVCSSDtAKLWALPRKVYREI 139
                   4455589**********************9989*******988776 PP

  == domain 3  score: 54.7 bits;  conditional E-value: 1.7e-18
                   EEE-TT-EEE-TTSB-SEEEEEEES-EEEEEEETTS.EEEEEEE-TTEEESHHHHHHTS--SSEEEESSTEEEEEEEHHHHHHH CS
  cNMP_binding   2 rsfkagevifrqGdpadslyivlsGevrvyrlsedgkevvlavlgpGdlfGelalltgeprtatvvAltdsellalprddflel 85 
                    +f+ag+ ++  G+ +  lyi+l+G++    + +dg  vv+++l++ d+fG ++ll +epr+++v A t+++l++++r+++ e+
    KOO24153.1 179 MHFEAGQKVVSHGEIGAALYIILKGSINQ--VLPDG--VVMGTLQRCDYFGMRSLLSDEPRAYDVLATTPVVLAKIERKTLIEI 258
                   58***************************..9****..9*****************************************9886 PP

  == domain 4  score: 67.8 bits;  conditional E-value: 1.5e-22
                   EEE-TT-EEE-TTSB-SEEEEEEES-EEEEEEETTS.EEEEEEE-TTEEESHHHHHHTS--SSEEEESSTEEEEEEEHHHHHHHH CS
  cNMP_binding   2 rsfkagevifrqGdpadslyivlsGevrvyrlsedgkevvlavlgpGdlfGelalltgeprtatvvAltdsellalprddflell 86 
                   r++++gevi+rq++p+ s++iv++Gev+ + +  +   + ++++gp ++fGe+all++epr+a+++Al++++ + l+r++f +ll
    KOO24153.1 299 REYQPGEVIIRQNEPGHSFFIVKEGEVQCF-V--NQ--KHVKTYGPSEYFGERALLRDEPRAADCIALGRVTAILLEREEFVKLL 378
                   89***************************7.3..33..24889**************************************9997 PP

  == domain 5  score: 21.2 bits;  conditional E-value: 5.1e-08
                   EE-TT-EEE-TTSB-SEEEEEEES-EEEEEEETT CS
  cNMP_binding   3 sfkagevifrqGdpadslyivlsGevrvyrlsed 36 
                    f+ g+ +fr+Gdp+ s+ ++++Gevr++r +++
    KOO24153.1 419 DFSEGDLLFREGDPGVSFILIREGEVRIFRGEAQ 452
                   699*************************965554 PP

>> Cupin_2  Cupin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.0      0.55   2.5e+03      44      58 ..      25      39 ..      23      41 .. 0.81
   2 ?    0.9   0.1     0.086   3.9e+02       2      31 ..     178     206 ..     177     215 .. 0.86
   3 ?   11.9   0.2     3e-05      0.13       4      39 ..     300     334 ..     297     347 .. 0.84

  Alignments for each domain:
  == domain 1  score: -1.7 bits;  conditional E-value: 0.55
                TEEEEE-TT-EEEEE CS
     Cupin_2 44 GdsvyfpagtpHrfr 58
                + ++++++gt H fr
  KOO24153.1 25 DNFYVVDSGTFHIFR 39
                568999999999886 PP

  == domain 2  score: 0.9 bits;  conditional E-value: 0.086
                 EEEEETTEEEEEECSSSEEEEEEEEESEEE CS
     Cupin_2   2 lvelppGesapshrHpgedeffyVleGege 31 
                  ++++ G++  sh   g+ +++++l+G + 
  KOO24153.1 178 EMHFEAGQKVVSHGEIGA-ALYIILKGSIN 206
                 589999**999******9.********875 PP

  == domain 3  score: 11.9 bits;  conditional E-value: 3e-05
                 EEETTEEEEEECSSSEEEEEEEEESEEEEEECTEEE CS
     Cupin_2   4 elppGesapshrHpgedeffyVleGegeltvdgeev 39 
                 e++pGe++ + + pg+  ff+V eGe+   v+ + v
  KOO24153.1 300 EYQPGEVIIRQNEPGH-SFFIVKEGEVQCFVNQKHV 334
                 79**************.**********999887633 PP

>> DUF4846  Domain of unknown function (4846)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.5   0.0    0.0023        10     152     179 ..     294     321 ..     282     334 .. 0.85
   2 ?    3.1   0.0     0.013        58     138     178 ..     399     439 ..     382     445 .. 0.86
   3 ?   -1.6   0.0      0.34   1.5e+03     165     191 ..     461     487 ..     450     490 .. 0.81

  Alignments for each domain:
  == domain 1  score: 5.5 bits;  conditional E-value: 0.0023
     DUF4846 152 kkvkledlqiGdvfikggspghavivvD 179
                 ++ + ++ q+G+v+i++  pgh   +v 
  KOO24153.1 294 EECTHREYQPGEVIIRQNEPGHSFFIVK 321
                 56678899***************99986 PP

  == domain 2  score: 3.1 bits;  conditional E-value: 0.013
     DUF4846 138 vfayagtlsLekelkkvkledlqiGdvfikggspghavivv 178
                 +f+y +++  e+ l++ +  d + Gd++ ++g pg   i++
  KOO24153.1 399 LFRYLSSSERETVLNAFQSVDFSEGDLLFREGDPGVSFILI 439
                 69999999999999999******************887765 PP

  == domain 3  score: -1.6 bits;  conditional E-value: 0.34
     DUF4846 165 fikggspghavivvDvaenekgekvfL 191
                 + ++g  + a++v D ++n+ + ++f+
  KOO24153.1 461 VTTQGVESTAILVQDFCKNHFELRCFV 487
                 456788999**********98888876 PP

>> R2K_3  ATP-grasp domain, R2K clade family 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   0.0       1.8   8.2e+03      37      68 ..      47      84 ..      26     105 .. 0.55
   2 ?   11.0   0.0     7e-05      0.31      98     128 ..     462     492 ..     436     520 .. 0.82

  Alignments for each domain:
  == domain 1  score: -3.4 bits;  conditional E-value: 1.8
       R2K_3 37 khgwrea..padylpel...hflgrdvrqlsrlvel.e 68
                  gw+++   ++  ++l     l+ ++ +++++v++  
  KOO24153.1 47 AVGWKPPaiSDAISESLaskMNLRPEAVNVKTVVSRfS 84
                45566665433333333542223455555556666642 PP

  == domain 2  score: 11.0 bits;  conditional E-value: 7e-05
       R2K_3  98 laakledtevlvsevvrfsaEwRvFvvdGev 128
                   ++ e+t +lv +  + + E R+Fvv+G++
  KOO24153.1 462 TTQGVESTAILVQDFCKNHFELRCFVVNGRI 492
                 45667799*********************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (635 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       412  (0.0229795); expected 358.6 (0.02)
Passed bias filter:                      402  (0.0224218); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.57u 0.27s 00:00:00.84 Elapsed: 00:00:00.44
# Mc/sec: 4356.39
//
Query:       KOO24154.1  [L=259]
Description: sel1 domain protein repeat-containing protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
      4e-11   42.9   0.0    8.6e-11   41.9   0.0    1.5  1  U-box          U-box domain
    1.2e-10   41.6   7.0    0.00035   21.1   0.2    3.6  3  Sel1           Sel1 repeat
    0.00024   20.8   0.0    0.00059   19.6   0.0    1.6  1  zf-Nse         Zinc-finger of the MIZ type in Nse subunit
  ------ inclusion threshold ------
      0.011   15.9   0.0      0.023   14.8   0.0    1.5  1  zf-NOSIP       Zinc-finger of nitric oxide synthase-interacti
      0.067   13.2   0.0       0.12   12.4   0.0    1.4  1  MKLP1_Arf_bdg  Arf6-interacting domain of mitotic kinesin-lik


Domain annotation for each model (and alignments):
>> U-box  U-box domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.9   0.0   2.4e-14   8.6e-11       4      66 ..      32      92 ..      30      96 .. 0.91

  Alignments for each domain:
  == domain 1  score: 41.9 bits;  conditional E-value: 2.4e-14
                GGB-TTT-SB-SSEEEETTTEEEEHHHHHHHHTT.SSB-TTT-SB--GGGSEE-HHHHHHHHH CS
       U-box  4 efldpitlelmkdPvilpsgvvvdrstiekhllsrdktdPftrepltqdqlipnlelKekIde 66
                e+++pit+ l  dPv + +g+v++rs+ie++l++ ++ +P+t+ ++    l p l++K++I +
  KOO24154.1 32 ELVCPITFSLPVDPVTAEDGKVYERSAIEEWLKQ-QHKSPVTNLAMG-TRLQPALQVKNMIRT 92
                899*******************************.*******88775.569999999999975 PP

>> Sel1  Sel1 repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.1   0.2   9.9e-08   0.00035       3      37 ..     131     164 ..     129     165 .. 0.88
   2 !    6.5   0.0    0.0039        14       7      21 ..     172     184 ..     172     190 .. 0.93
   3 !   16.0   0.7     4e-06     0.014       2      34 ..     203     234 ..     202     237 .. 0.89

  Alignments for each domain:
  == domain 1  score: 21.1 bits;  conditional E-value: 9.9e-08
        Sel1   3 AmyrLGmfylylnGl.gvpkDpekAiewyekAAeqG 37 
                 Am+ LG   +y +G+ g+ kD+ k +ewy+k+ e+G
  KOO24154.1 131 AMFILG--VWYKHGQkGLAKDKAKTFEWYKKSHEAG 164
                 9*****..666****99**************86666 PP

  == domain 2  score: 6.5 bits;  conditional E-value: 0.0039
        Sel1   7 LGmfylylnGlgvpk 21 
                 LG  ++yl+G+gvpk
  KOO24154.1 172 LG--ECYLHGDGVPK 184
                 89..9********97 PP

  == domain 3  score: 16.0 bits;  conditional E-value: 4e-06
        Sel1   2 eAmyrLGmfylylnGl.gvpkDpekAiewyekAA 34 
                 +A+y LG   +y +G+ g pkD+  A+++y + A
  KOO24154.1 203 YACYILG--RAYADGDwGFPKDETMARRYYSMVA 234
                 69*****..888****88************9865 PP

>> zf-Nse  Zinc-finger of the MIZ type in Nse subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.6   0.0   1.6e-07   0.00059       6      52 ..      27      70 ..      25      73 .. 0.82

  Alignments for each domain:
  == domain 1  score: 19.6 bits;  conditional E-value: 1.6e-07
                XSSBXXSB-TTTSSB-SSEEEESSS--EEEHHHHHHHCTTTS-EE-S CS
      zf-Nse  6 eeerislkCPltlqpfeePvtskkCpHvFEreaIlelikrkktvkCP 52
                ee+ ++l CP+t++  ++Pvt      v+Er+aI+e +k+  + k P
  KOO24154.1 27 EEAFAELVCPITFSLPVDPVTAEDG-KVYERSAIEEWLKQ--QHKSP 70
                566789***************9985.5***********55..44445 PP

>> zf-NOSIP  Zinc-finger of nitric oxide synthase-interacting protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.8   0.0   6.3e-06     0.023      42      74 ..      34      66 ..       7      67 .. 0.81

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 6.3e-06
    zf-NOSIP 42 ccslslqacrdpvltedgylyekeaileyilhq 74
                 c +++    dpv +edg +ye+ ai e++  q
  KOO24154.1 34 VCPITFSLPVDPVTAEDGKVYERSAIEEWLKQQ 66
                4677777788****************9987666 PP

>> MKLP1_Arf_bdg  Arf6-interacting domain of mitotic kinesin-like protein 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   3.4e-05      0.12      10      67 ..      55     115 ..      46     121 .. 0.79

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 3.4e-05
  MKLP1_Arf_bdg  10 srsagerwld..Hk.pksnvdlgtilqpklkkkksvtkltkpkelalakaskYvLthqeqd 67 
                     rsa e+wl   Hk p +n+ +gt lqp l+ k+ ++++ ++  l+  k++ + L+  e+ 
     KOO24154.1  55 ERSAIEEWLKqqHKsPVTNLAMGTRLQPALQVKNMIRTMVTSGALTGDKVDAWKLKLEEEG 115
                    588999**9633664667899**********888888888888899999999988776654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (259 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       522  (0.0291148); expected 358.6 (0.02)
Passed bias filter:                      452  (0.0252106); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.46u 0.24s 00:00:00.70 Elapsed: 00:00:00.41
# Mc/sec: 1873.53
//
Query:       KOO24155.1  [L=197]
Description: protein fucoxanthin chlorophyll a c protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    5.9e-30  104.9   0.5    7.8e-30  104.5   0.5    1.1  1  Chloroa_b-bind  Chlorophyll A-B binding protein


Domain annotation for each model (and alignments):
>> Chloroa_b-bind  Chlorophyll A-B binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  104.5   0.5   4.3e-34   7.8e-30       4     158 ..      32     184 ..      30     187 .. 0.81

  Alignments for each domain:
  == domain 1  score: 104.5 bits;  conditional E-value: 4.3e-34
                     HXXSXSTTXSX...BXTT-T...T-SBSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSCCCT--.TTTTTTS......SS-HHHHHH.HH CS
  Chloroa_b-bind   4 eldgslpgdlg...fDplgls..kdpetlkrlreaEliHGRvAMlavlGalvpelltklsaassfaegpawaeagkv......alsvptllalqi 87 
                     +l+g ++ + g   +Dpl+ls   d+ +lk +r+aEl+H+RvAMla++G+ ++  +t++++  sf   +++a+a+++      a+ vp+++++q+
      KOO24155.1  32 DLPG-ISTETGnklWDPLKLSekMDESNLKLVRAAELKHCRVAMLATVGWAWTATGTHFEGMLSFNPPVSFADAAAAgnpllaAAMVPGFGIWQM 125
                     5667.667777788*******53377********************************98877765544466666557899988889******** PP

                     HHHHHHHHHHHHHHHHSTTCSS-SSSSSSSSHCHHSTTSTT.TSHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
  Chloroa_b-bind  88 llligflelareqelkapesegeeekrgypGglgfdplglakkdeeekaelkekEiknGRlAMiaflgfvv 158
                     +l+ig le++ e++++a          ++ G+  f    ++ +d++++++ + +E+knGRlAMi++++f+ 
      KOO24155.1 126 ILAIGGLEIYWEKKYPA---------TEFGGN--FGVPAVT-QDPKKLKFFQDAELKNGRLAMIGIISFAT 184
                     *********97666644.........344455..4444454.8*************************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (197 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       355  (0.0198003); expected 358.6 (0.02)
Passed bias filter:                      297  (0.0165653); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.24s 00:00:00.62 Elapsed: 00:00:00.38
# Mc/sec: 1547.22
//
Query:       KOO24156.1  [L=244]
Description: dynein light chain [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    9.6e-09   34.9   1.4    1.1e-08   34.7   0.0    1.8  2  Robl_LC7  Roadblock/LC7 domain
     0.0019   18.1   0.0      0.003   17.5   0.0    1.3  1  LAMTOR5   Ragulator complex protein LAMTOR5


Domain annotation for each model (and alignments):
>> Robl_LC7  Roadblock/LC7 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.7   0.0   1.2e-12   1.1e-08       2      89 ..     124     210 ..     123     212 .. 0.95
   2 ?   -2.7   0.3       0.6   5.4e+03      36      52 ..     224     240 ..     219     243 .. 0.55

  Alignments for each domain:
  == domain 1  score: 34.7 bits;  conditional E-value: 1.2e-12
                 HHHHHHHCCHHCTECEEEEEETTS-EEEECCSSSS-HHHHHHHHHHHHHHHHHHHHHCTSSSECEEEEEETTEEEEEEECTTTEEEEE CS
    Robl_LC7   2 veelleelqsvpgvrgalvvskdGlviatstldnddadqlAalasgllsaakaaarelgegelkelliegkkgelyltpagegalLvv 89 
                 ++e+ ++l  v gv g+l+v+kdGl++++ t++ ++a +lA  + +ll  ak+ a   +++el+ l +++ k el+++ +++ga+  +
  KOO24156.1 124 IDETMQRLSFVHGVFGVLIVDKDGLIVRA-TMPLEEAAKLAGPTLSLLQRAKSCAAVHEGDELQMLCVRTRKYELLMCLEANGAFAIC 210
                 789999***********************.***************************************************9988655 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 0.6
                 S-HHHHHHHHHHHHHHH CS
    Robl_LC7  36 ddadqlAalasgllsaa 52 
                 +da +++a+ s l +aa
  KOO24156.1 224 TDAPVTSAARSVLRAAA 240
                 55555555555555555 PP

>> LAMTOR5  Ragulator complex protein LAMTOR5
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5   0.0   3.3e-07     0.003       6      87 ..     125     212 ..     121     213 .. 0.78

  Alignments for each domain:
  == domain 1  score: 17.5 bits;  conditional E-value: 3.3e-07
     LAMTOR5   6 eevldevmskegvvGvlcaDeqGLclgsrGtlsn..ksagiitallklAskLe..sesseaPvitlesedgsili..kkqgeitvavh 87 
                 +e++++++  +gv Gvl++D++GL + ++  l++  k ag+  +ll+ A+     +e++e  + ++ + + ++l+  + +g++ ++v+
  KOO24156.1 125 DETMQRLSFVHGVFGVLIVDKDGLIVRATMPLEEaaKLAGPTLSLLQRAKSCAavHEGDELQMLCVRTRKYELLMclEANGAFAICVF 212
                 67777788889***************999988762257999********999877777788888888888885543445777777776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (244 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       241  (0.0134419); expected 358.6 (0.02)
Passed bias filter:                      215  (0.0119917); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.42u 0.23s 00:00:00.65 Elapsed: 00:00:00.40
# Mc/sec: 1836.53
//
Query:       KOO24157.1  [L=425]
Description: hypothetical protein Ctob_002128 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (425 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       573  (0.0319594); expected 358.6 (0.02)
Passed bias filter:                      471  (0.0262703); expected 358.6 (0.02)
Passed Vit filter:                        48  (0.00267723); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.52u 0.24s 00:00:00.76 Elapsed: 00:00:00.41
# Mc/sec: 3091.22
//
Query:       KOO24158.1  [L=1000]
Description: hypothetical protein Ctob_002127 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.3e-15   56.0  25.7      0.015   15.4   0.0   10.5 11  Arm       Armadillo/beta-catenin-like repeat
  ------ inclusion threshold ------
          3    6.4   5.6        5.5    5.5   5.6    1.3  1  AAA_13    AAA domain


Domain annotation for each model (and alignments):
>> Arm  Armadillo/beta-catenin-like repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    3.4   0.2    0.0097        87      14      33 ..     276     295 ..     275     296 .. 0.90
   2 ?    2.2   0.0     0.023   2.1e+02       9      22 ..     313     326 ..     311     334 .. 0.83
   3 !    6.1   0.1    0.0014        12       7      33 ..     358     384 ..     353     390 .. 0.92
   4 !   15.4   0.0   1.6e-06     0.015       8      39 ..     401     433 ..     395     435 .. 0.91
   5 !   11.8   0.5   2.1e-05      0.19       2      41 .]     438     478 ..     437     478 .. 0.92
   6 !    5.4   0.2    0.0022        19       5      36 ..     535     568 ..     531     569 .. 0.89
   7 ?   -1.4   0.1      0.31   2.8e+03       7      23 ..     581     599 ..     579     609 .. 0.72
   8 !   15.2   0.0   1.8e-06     0.016       4      30 ..     668     696 ..     665     700 .. 0.88
   9 ?    0.7   0.0     0.066     6e+02       2      22 ..     709     729 ..     708     735 .. 0.80
  10 ?   -3.4   0.3       1.3   1.2e+04      26      39 ..     855     868 ..     853     869 .. 0.81
  11 !    4.0   0.0    0.0063        57       5      22 ..     876     893 ..     872     900 .. 0.83

  Alignments for each domain:
  == domain 1  score: 3.4 bits;  conditional E-value: 0.0097
                 HHHHHHHTTTSSHHHHHHHH CS
         Arm  14 vppLvrLLssedeevqeeAa 33 
                 ++pL +LL s++e+v+  Aa
  KOO24158.1 276 LEPLSDLLLSDHEDVCVKAA 295
                 68*************98776 PP

  == domain 2  score: 2.2 bits;  conditional E-value: 0.023
                 HHTTHHHHHHHHTT CS
         Arm   9 ieaGavppLvrLLs 22 
                  e Ga+p+ v+LL+
  KOO24158.1 313 AEVGALPRIVALLD 326
                 688**********8 PP

  == domain 3  score: 6.1 bits;  conditional E-value: 0.0014
                 HHHHTTHHHHHHHHTTTSSHHHHHHHH CS
         Arm   7 avieaGavppLvrLLssedeevqeeAa 33 
                 ++++a++ ++LvrL  s  +e+ + A+
  KOO24158.1 358 QLVQANGPKRLVRLVGSSQPELARTAL 384
                 589**************9999999886 PP

  == domain 4  score: 15.4 bits;  conditional E-value: 1.6e-06
                 HHHTTHHHHHHHHTT.TSSHHHHHHHHHHHHHH CS
         Arm   8 vieaGavppLvrLLs.sedeevqeeAawALsNL 39 
                 v eaG++ppL+r+L+  + +  +e+Aa+AL+ L
  KOO24158.1 401 VSEAGVLPPLLRCLRpGMPTPSVEPAAAALAIL 433
                 679***************************866 PP

  == domain 5  score: 11.8 bits;  conditional E-value: 2.1e-05
                 HHHHHHHHHTTHHHHHHHHTT.TSSHHHHHHHHHHHHHHTT CS
         Arm   2 senkdavieaGavppLvrLLs.sedeevqeeAawALsNLaa 41 
                 ++++ av e G++p Lv+LLs   +    + A++A++ L++
  KOO24158.1 438 PPCCAAVLEGGGLPLLVQLLSrGANSLAAHSACSAIASLTR 478
                 6789999999*************************999986 PP

  == domain 6  score: 5.4 bits;  conditional E-value: 0.0022
                 HHHHHHTTHHHHHHHHTT..TSSHHHHHHHHHHH CS
         Arm   5 kdavieaGavppLvrLLs..sedeevqeeAawAL 36 
                   +++e+Ga+  Lv LL       +++++A+ AL
  KOO24158.1 535 AAELREMGALTSLVGLLAskVAPNGLKTNACEAL 568
                 67899*************99999********999 PP

  == domain 7  score: -1.4 bits;  conditional E-value: 0.31
                 HHHHTTHHHHHHHHTT..T CS
         Arm   7 avieaGavppLvrLLs..s 23 
                 +++++Ga+p L  L +  +
  KOO24158.1 581 ELRRLGALPLLAILVKgaT 599
                 67899*****987776555 PP

  == domain 8  score: 15.2 bits;  conditional E-value: 1.8e-06
                 HHHHHHHTTHHHHHHHHTT..TSSHHHHH CS
         Arm   4 nkdavieaGavppLvrLLs..sedeevqe 30 
                  ++++i++Gavp+Lv+L++  + d +++ 
  KOO24158.1 668 ARKQIIKLGAVPRLVKLMRlgHLDIGTLN 696
                 5899***************9999998876 PP

  == domain 9  score: 0.7 bits;  conditional E-value: 0.066
                 HHHHHHHHHTTHHHHHHHHTT CS
         Arm   2 senkdavieaGavppLvrLLs 22 
                 +e  d+ + aG+ ++L++L++
  KOO24158.1 709 PEAQDEARVAGVFEVLIDLIR 729
                 666788889**********98 PP

  == domain 10  score: -3.4 bits;  conditional E-value: 1.3
                 HHHHHHHHHHHHHH CS
         Arm  26 eevqeeAawALsNL 39 
                  e++++Aa +L+ L
  KOO24158.1 855 LELRQNAALCLASL 868
                 57899***999876 PP

  == domain 11  score: 4.0 bits;  conditional E-value: 0.0063
                 HHHHHHTTHHHHHHHHTT CS
         Arm   5 kdavieaGavppLvrLLs 22 
                 k+a  +aGav +L +LL+
  KOO24158.1 876 KEAAFKAGAVAALATLLD 893
                 78889************8 PP

>> AAA_13  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.5   5.6   0.00062       5.5     113     226 ..     759     870 ..     745     878 .. 0.78

  Alignments for each domain:
  == domain 1  score: 5.5 bits;  conditional E-value: 0.00062
      AAA_13 113 eaaeaqlqkaekekkklekeledeawkkivkkknsalsealkglky.eekfkerllkelkkknrkaaellsdeelkakletvesenlpelaplslssid 210
                 ++ ++ ++++ +  +++++ ++d  w+k  ++++s+  ealk++++ e ++ + +++el+ +  ++a+lls++e+++++e   +++  + ++ +   ++
  KOO24158.1 759 KKGSRAISSTARSVDDEAEGFADARWQKH-QSQQSQRAEALKKIQQtEVQALSAAVAELAAEAPATAPLLSEAEVEEEAELRRQQAEDDAPSET--PDA 854
                 44455566666677888999*******88.899999999****9998999***********99***************9999888877776644..233 PP

      AAA_13 211 ldalekaeilkkkvvg 226
                 l+  ++a+++ +++v+
  KOO24158.1 855 LELRQNAALCLASLVK 870
                 3333446666666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1000 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1157  (0.0645323); expected 358.6 (0.02)
Passed bias filter:                      522  (0.0291148); expected 358.6 (0.02)
Passed Vit filter:                        52  (0.00290033); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.82u 0.29s 00:00:01.10 Elapsed: 00:00:00.46
# Mc/sec: 6601.93
//
Query:       KOO24159.1  [L=282]
Description: hypothetical protein Ctob_002126 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (282 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1178  (0.0657036); expected 358.6 (0.02)
Passed bias filter:                      315  (0.0175693); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.43u 0.25s 00:00:00.68 Elapsed: 00:00:00.41
# Mc/sec: 2065.04
//
Query:       KOO24160.1  [L=424]
Description: kinesin family member 4a [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
   4.8e-102  341.3   0.0   5.8e-102  341.0   0.0    1.1  1  Kinesin      Kinesin motor domain
      7e-21   74.7   0.0    1.9e-20   73.3   0.0    1.8  1  Microtub_bd  Microtubule binding


Domain annotation for each model (and alignments):
>> Kinesin  Kinesin motor domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  341.0   0.0  6.4e-106  5.8e-102       1     333 []      25     350 ..      25     350 .. 0.93

  Alignments for each domain:
  == domain 1  score: 341.0 bits;  conditional E-value: 6.4e-106
                 EE-SSSHHHHTTTTEBCEEEECTCTCEEEEEEEEECTTSCEEEEESEEEETTS-HHHHHHHHHHHHHHHHHTTSEEEEEEEESTTSSHHHHHTBC.... CS
     Kinesin   1 RvRplnekekeeeeeeeveveeekkeeekkskkenkeeeekkfkFdkvfdeeatqeevyeetakplvesvleGynatifaYGqtgsGKTyTmegk.... 95 
                 R+Rpl +++k+e ++e+ +         +  + +    ++++f++++v+d +a+qe v++ ++k lvesvl+GynatifaYGqtgsGKT+Tm  +    
  KOO24160.1  25 RIRPLLARDKAEGARECLRK--------VAGEPQVLIGADRAFTYNHVYDLAASQEAVFDGCVKGLVESVLSGYNATIFAYGQTGSGKTHTMGSScsad 115
                 78888888888888888753........4666777778899****************************************************99**** PP

                 ........TTTSBSHHHHHHHHHHHHHHHCTTTHEEEEEEEEEEEEEETTEEEETTSTTT.TSTSSEBEEEECTTSCCEEETTS--EEESSHHHHHHHH CS
     Kinesin  96 ........eeeeeGiipraleelFesikkekeekekefsvkvsylEiYneeiyDLLeskk.skkkkklkiredskkgevyvkgltevevksaeevlell 185
                          +e++G+ipra++ lF   ++++ +   e++ +  ++EiY ee+ DLL+ +  ++k ++l ire ++ g+++++g + + v+s+ e++++l
  KOO24160.1 116 aeipedtaLTEDSGLIPRAIAALFAGAAATEGT---ECRATAAFIEIYCEEVQDLLQWNAeESKLTTLPIRETPD-GSLTLSGQKRRAVSSVAEAMRVL 210
                 ******998889***************987765...99*******************9873455569*******9.56********************* PP

                 HHHHHHHTSTTSSCTSHHCCSEEEEEEEEEEEETTTTTCEEEEEEEEEEEEEEECCCHHHHSSTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCCTSTSC CS
     Kinesin 186 ekgeknrkvaetklneeSSRSHavftitleqknlkeeteekvkisklnLvDLAGsErasktgaaegerlkEaaniNkSLlaLgrvisaLaekkkskhip 284
                 + g++nr++++t++n++SSRSHa+f+++l  k + +     + + kl++vDLAGsEra++tga +gerlkE+ +iNk LlaLg+vi+aL+ek  ++h+p
  KOO24160.1 211 ADGSRNRATGSTAMNATSSRSHAIFSLELDLKVKGK-----TFSPKLHFVDLAGSERAKRTGA-SGERLKEGIEINKGLLALGNVINALCEK--HSHVP 301
                 ******************************998663.....4578*****************5.7999************************..***** PP

                 GGGSHHHHHTGGGHSSSSEEEEEEEE-TBGGGHHHHHHHHHHHHHHCTT CS
     Kinesin 285 YRdSkLTrlLqdsLgGnsktlmivtvspssenleetlstlkfaerakei 333
                 YRdSkLTrlLqdsLgGnsktlm+++vsp + +leetl+tlk+a+ra++i
  KOO24160.1 302 YRDSKLTRLLQDSLGGNSKTLMLACVSPGDADLEETLNTLKYANRARQI 350
                 ***********************************************98 PP

>> Microtub_bd  Microtubule binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   73.3   0.0   2.2e-24   1.9e-20      47     149 .]      54     168 ..      20     168 .. 0.88

  Alignments for each domain:
  == domain 1  score: 73.3 bits;  conditional E-value: 2.2e-24
                  TTTEEEE-SEEEECTTHCCCCCCCC.HHHHHHHHTT--EEEEEEES.............................ST-HCHHHHHHHHHHCCTSCCCC CS
  Microtub_bd  47 kkkkefsFdrvfeseseqeevfeei.sqlvqsaldgynvcifaygqTGsGKtyTmeg.............eeeeagmipraveeifetiselkekgwk 130
                    ++ f++++v++  ++qe vf+ + + lv+s+l+gyn +ifaygqTGsGKt+Tm +              +e++g ipra+ ++f  ++ +  +g +
   KOO24160.1  54 GADRAFTYNHVYDLAASQEAVFDGCvKGLVESVLSGYNATIFAYGQTGSGKTHTMGSscsadaeipedtaLTEDSGLIPRAIAALFAGAAAT--EGTE 149
                  56789******************96488***************************99999999999887667899***************99..9*** PP

                  EEEEEEEEEEESS-EEETT CS
  Microtub_bd 131 yeielqfveiynekvqDlL 149
                   + ++ f+eiy e+vqDlL
   KOO24160.1 150 CRATAAFIEIYCEEVQDLL 168
                  ******************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (424 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       610  (0.0340231); expected 358.6 (0.02)
Passed bias filter:                      505  (0.0281667); expected 358.6 (0.02)
Passed Vit filter:                        54  (0.00301188); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.48u 0.26s 00:00:00.74 Elapsed: 00:00:00.40
# Mc/sec: 3219.45
//
Query:       KOO24161.1  [L=256]
Description: hypothetical protein Ctob_002124 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (256 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       286  (0.0159518); expected 358.6 (0.02)
Passed bias filter:                      262  (0.0146132); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.24s 00:00:00.61 Elapsed: 00:00:00.36
# Mc/sec: 2121.42
//
Query:       KOO24162.1  [L=199]
Description: ubiquitin-conjugating enzyme e2 w [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    9.6e-27   93.3   0.0    1.3e-26   92.9   0.0    1.1  1  UQ_con     Ubiquitin-conjugating enzyme
    0.00014   21.6   0.0    0.00018   21.2   0.0    1.3  1  Prok-E2_B  Prokaryotic E2 family B
  ------ inclusion threshold ------
      0.027   14.1   0.0      0.035   13.7   0.0    1.3  1  UFC1       Ubiquitin-fold modifier-conjugating enzyme 1
      0.051   13.9   0.0      0.069   13.4   0.0    1.4  1  RWD        RWD domain


Domain annotation for each model (and alignments):
>> UQ_con  Ubiquitin-conjugating enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   92.9   0.0     3e-30   1.3e-26       2     131 ..      58     187 ..      57     195 .. 0.85

  Alignments for each domain:
  == domain 1  score: 92.9 bits;  conditional E-value: 3e-30
                 HHHHHHHHHHSTTTTEEEEEEETTEECEEEEEEEB.TTSTTTTEEEEEEEE--TTTTTS--EEEES.ST-SCTTBETTSBB-CGGGSTTT--TTSHHHH CS
      UQ_con   2 lqkelkelakkkpsgisaklvddenlfewkvlikgpedtpYeggvFklelefpedYPlkpPkvkfv.tkifHPnvdksGevcldiLkeekWspaltles 99 
                 + k+l+ ++k+  + i  +++d e ++ w v ++g+++t+Yeg++++l+++f  dYP +pP+v+f+    +H +++++G++cl+iL ++ W p ++++s
  KOO24162.1  58 VLKDLR-IMKRDGPEIGIEVEDCECITDWVVKMVGAPGTIYEGEIYRLRVRFHADYPTQPPTVTFMrPAPVHEHIYSDGKICLNILYND-WDPKTDVKS 154
                 566666.345555666777778789****************************************955889****************66.********* PP

                 HHHHHHHHHHS-.-TTS-SSHHHHHHHHHTHHH CS
      UQ_con 100 vllsiqsLlaep.npesplnkeaakllkkdree 131
                   ls++s+l++   +++p +++    +++ +++
  KOO24162.1 155 LSLSLLSMLSSAkAKKRPPDNDSTVVMSQGQKT 187
                 *********887688888888887777776554 PP

>> Prok-E2_B  Prokaryotic E2 family B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.2   0.0   4.1e-08   0.00018      22      95 ..      67     153 ..      35     172 .. 0.73

  Alignments for each domain:
  == domain 1  score: 21.2 bits;  conditional E-value: 4.1e-08
   Prok-E2_B  22 gkkaierssvkt...................sggtvdlrlvypdsfpllppavflqdpeqlkllpHintfggaLClleeeldldewdpngsva 95 
                 + +++++ +v+                    +g +++lr+ +  ++p+ pp v    p   ++  Hi++ +g +Cl       + wdp+  v+
  KOO24162.1  67 RDGPEIGIEVEDcecitdwvvkmvgapgtiyEGEIYRLRVRFHADYPTQPPTVTFMRPA--PVHEHIYS-DGKICL---NILYNDWDPKTDVK 153
                 4444444444446666666666666677777899*************************..889*****.******...56666676665554 PP

>> UFC1  Ubiquitin-fold modifier-conjugating enzyme 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.0   7.8e-06     0.035      61     117 ..      90     144 ..      30     165 .. 0.81

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 7.8e-06
        UFC1  61 kGkcwyvhelkkyefdlefdipvtypataleialpeldgktakmyrgGkicltihfk 117
                 +G   +++e + y ++++f+  + yp+ ++ +++       + +y +Gkicl+i ++
  KOO24162.1  90 VGAPGTIYEGEIYRLRVRFH--ADYPTQPPTVTFMRPAPVHEHIYSDGKICLNILYN 144
                 45566788888888888886..78****************************98765 PP

>> RWD  RWD domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.0   1.5e-05     0.069      55      96 ..     102     163 ..      31     170 .. 0.83

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 1.5e-05
                 EEEEEEE-SSTTSS--EEEEEECC....................SS-HHHHHHHHHHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxx....................xxxxxxxxxxxxxxxxxx RF
         RWD  55 lkleiklpeeYPeeaPiislsste....................nlpkeqvksleekleela 96 
                 ++l +++  +YP+++P +++  +                     + pk++vksl+  l +++
  KOO24162.1 102 YRLRVRFHADYPTQPPTVTFMRPApvhehiysdgkiclnilyndWDPKTDVKSLSLSLLSML 163
                 7899****************999988888888888888777777777888888877777665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (199 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       462  (0.0257683); expected 358.6 (0.02)
Passed bias filter:                      392  (0.021864); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.40u 0.25s 00:00:00.65 Elapsed: 00:00:00.40
# Mc/sec: 1505.83
//
Query:       KOO24163.1  [L=257]
Description: wd40 repeat-containing protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    9.7e-13   48.4   2.6     0.0052   17.6   0.0    4.7  5  WD40         WD domain, G-beta repeat
    3.5e-05   24.0   0.0       0.58   10.5   0.0    3.5  3  ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain
  ------ inclusion threshold ------
       0.45    9.4   2.8       0.89    8.4   0.2    2.0  2  PALB2_WD40   Partner and localizer of BRCA2 WD40 domain


Domain annotation for each model (and alignments):
>> WD40  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.9   0.0    0.0091        54      18      38 .]      29      50 ..      18      50 .. 0.81
   2 !    8.3   0.0   0.00078       4.6      11      38 .]      68      95 ..      54      95 .. 0.81
   3 ?   -2.8   0.0       2.4   1.4e+04      10      10 ..     135     135 ..     123     151 .. 0.57
   4 !   14.2   0.0     1e-05      0.06       4      38 .]     165     200 ..     163     200 .. 0.93
   5 !   17.6   0.0   8.7e-07    0.0052      11      37 ..     229     255 ..     215     256 .. 0.84

  Alignments for each domain:
  == domain 1  score: 4.9 bits;  conditional E-value: 0.0091
                EETTSSEEE.EEETTSEEEEEE CS
        WD40 18 fspdgawla.sGsdDgtvriWd 38
                ++p ga+l+ ++s  + +r Wd
  KOO24163.1 29 YQPQGALLSvAASTSNVIRQWD 50
                68999998535677*******9 PP

  == domain 2  score: 8.3 bits;  conditional E-value: 0.00078
                SSEEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40 11 ssvtslafspdgawlasGsdDgtvriWd 38
                +sv++la ++++++l+ G+ Dg  ri d
  KOO24163.1 68 FSVRALASDQHSSLLVVGGTDGATRIID 95
                459***************99**999865 PP

  == domain 3  score: -2.8 bits;  conditional E-value: 2.4
                 S CS
        WD40  10 H 10 
                 H
  KOO24163.1 135 H 135
                 3 PP

  == domain 4  score: 14.2 bits;  conditional E-value: 1e-05
                 EEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40   4 lrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 
                 ++t+t H s+ ++l+ +++ ++lasGs+++ ++++d
  KOO24163.1 165 VHTITSHkSGLSALSLHDHLPLLASGSRNQFIKLFD 200
                 899****777************************98 PP

  == domain 5  score: 17.6 bits;  conditional E-value: 8.7e-07
                 SSEEEEEEETTSSEEEEEETTSEEEEE CS
        WD40  11 ssvtslafspdgawlasGsdDgtvriW 37 
                 ++vt+laf+p +++la G  D  v i+
  KOO24163.1 229 GPVTCLAFHPTKPLLAVGATDSVVSIY 255
                 46****************88****998 PP

>> ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.9   0.0   0.00062       3.7      19      66 ..      51      95 ..      28     101 .. 0.76
   2 ?   -1.7   0.0      0.64   3.8e+03      38      67 ..     172     201 ..     159     205 .. 0.71
   3 !   10.5   0.0   9.7e-05      0.58      39      66 ..     229     256 ..     213     257 .] 0.91

  Alignments for each domain:
  == domain 1  score: 7.9 bits;  conditional E-value: 0.00062
  ANAPC4_WD40 19 llvfRlngqrvwtleedkedsevrsLaWkpdgklLavaysdgevrlld 66
                 l++ R   q  +++   ++  +vr+La  +  +lL+v+  dg+ r++d
   KOO24163.1 51 LVAERCARQLTVDV---ADAFSVRALASDQHSSLLVVGGTDGATRIID 95
                 44555555555555...777899**********************998 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 0.64
  ANAPC4_WD40  38 dsevrsLaWkpdgklLavaysdgevrllda 67 
                  +s  ++L+ +    lLa +  +  ++l+d 
   KOO24163.1 172 KSGLSALSLHDHLPLLASGSRNQFIKLFDL 201
                  455556666666678888888888888775 PP

  == domain 3  score: 10.5 bits;  conditional E-value: 9.7e-05
  ANAPC4_WD40  39 sevrsLaWkpdgklLavaysdgevrlld 66 
                  + v++La++p   lLav+  d+ v++++
   KOO24163.1 229 GPVTCLAFHPTKPLLAVGATDSVVSIYS 256
                  679***********************98 PP

>> PALB2_WD40  Partner and localizer of BRCA2 WD40 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.4   0.2   0.00015      0.89     296     347 ..      38      91 ..      33      95 .. 0.77
   2 ?    1.1   0.2     0.024   1.5e+02     297     325 ..     132     160 ..     120     177 .. 0.72

  Alignments for each domain:
  == domain 1  score: 8.4 bits;  conditional E-value: 0.00015
  PALB2_WD40 296 aavltsGaiavWdlllghctalllpesdesWslvrW.sgtdsq.llaGqkdGsv 347
                  a  ts  i  Wdl+  +c+ +l+  + + +s+    s+++s+ l+ G  dG  
  KOO24163.1  38 VAASTSNVIRQWDLVAERCARQLTVDVADAFSVRALaSDQHSSlLVVGGTDGAT 91 
                 46679***********************99998665144555515578888865 PP

  == domain 2  score: 1.1 bits;  conditional E-value: 0.024
  PALB2_WD40 297 avltsGaiavWdlllghctalllpesdes 325
                      G + vWdl ++  +a  lp+s +s
  KOO24163.1 132 IATHLGDMGVWDLRRAVSSASALPHSSSS 160
                 333459999*******9999888877654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (257 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       360  (0.0200792); expected 358.6 (0.02)
Passed bias filter:                      294  (0.016398); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.42u 0.26s 00:00:00.68 Elapsed: 00:00:00.41
# Mc/sec: 1871.33
//
Query:       KOO24164.1  [L=140]
Description: hypothetical protein Ctob_002121 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (140 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       349  (0.0194657); expected 358.6 (0.02)
Passed bias filter:                      186  (0.0103743); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.25s 00:00:00.62 Elapsed: 00:00:00.39
# Mc/sec: 1064.60
//
Query:       KOO24165.1  [L=365]
Description: hypothetical protein Ctob_002120 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      4e-55  185.8   0.0    5.4e-55  185.4   0.0    1.1  1  Raptor_N  Raptor N-terminal CASPase like domain


Domain annotation for each model (and alignments):
>> Raptor_N  Raptor N-terminal CASPase like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  185.4   0.0     3e-59   5.4e-55       1     141 [.      50     197 ..      50     198 .. 0.95

  Alignments for each domain:
  == domain 1  score: 185.4 bits;  conditional E-value: 3e-59
    Raptor_N   1 lktksvilvlclnigvdppdvvktkpcarleawidpss.e....leeiaknlqdqyeslqlrarykqlldptvedvkklcqslrrna..kdervlfHYn 92 
                 lkt+ ++lvlcln gvdppdv+k +pcarle+w dp s +    le+i+k+lq qye +q+ra+y+ + dpt+e+++k+c  lrrn   ++er+l+H+n
  KOO24165.1  50 LKTVAAALVLCLNVGVDPPDVIKPDPCARLECWLDPASmPaqkaLEAIGKALQAQYECWQPRASYRLCADPTLEELRKVCVGLRRNHggREERLLLHFN 148
                 599***********************************6245566*****************************************84469******** PP

    Raptor_N  93 GhgvprptengeiwvfdksytqyiplslaelqewlgspsiyifDCsnAg 141
                 Ghgvprp +nge+wvf++s+tqyip+s ++lq wlgsp+i ++DCsnA+
  KOO24165.1 149 GHGVPRPSVNGELWVFNRSFTQYIPVSAYDLQLWLGSPCILVLDCSNAA 197
                 ************************************************7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (365 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       244  (0.0136092); expected 358.6 (0.02)
Passed bias filter:                      221  (0.0123264); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.22s 00:00:00.63 Elapsed: 00:00:00.37
# Mc/sec: 2985.67
//
Query:       KOO24166.1  [L=323]
Description: hypothetical protein Ctob_002116 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (323 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       532  (0.0296726); expected 358.6 (0.02)
Passed bias filter:                      396  (0.0220871); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.44u 0.26s 00:00:00.70 Elapsed: 00:00:00.42
# Mc/sec: 2313.03
//
Query:       KOO24167.1  [L=189]
Description: hypothetical protein Ctob_002117 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
  ------ inclusion threshold ------
      0.018   15.7   1.1      0.036   14.7   1.1    1.6  1  DnaI_N           Primosomal protein DnaI N-terminus
      0.042   13.7   1.1      0.044   13.6   1.1    1.1  1  RB_A             Retinoblastoma-associated protein A domain
      0.055   13.4   4.9       0.13   12.2   4.9    1.6  1  HMG_box_5        HMG (high mobility group) box 5
       0.14   11.7   3.4       0.33   10.5   0.0    2.2  2  Peptidase_M74    Penicillin-insensitive murein endopeptidase
       0.34   10.6   2.5       0.51   10.0   0.3    2.0  2  DDE_Tnp_4        DDE superfamily endonuclease


Domain annotation for each model (and alignments):
>> DnaI_N  Primosomal protein DnaI N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.7   1.1     1e-05     0.036       2      59 ..      48     102 ..      47     127 .. 0.87

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 1e-05
                 XXTTXSXXXXSXXXHHHHHHHHHHHHHTTXHHHHHHHHHSTTTC-HHHHHHTHHHHHH CS
      DnaI_N   2 esigeslkkllkkrkfekryeklkeevlsdpeVqaFlqehqeelteeaierslskLye 59 
                 e+++ +++  +++++f+ ++e++k+e+ + +eV a++++++  l ++++ +sl ++  
  KOO24167.1  48 EHLEATIEA-MRQKRFSVEMEAMKREAAAAAEVTALIKSKE--LADNMYMNSLREIMR 102
                 677888888.99**************************999..*******99998865 PP

>> RB_A  Retinoblastoma-associated protein A domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   1.1   1.2e-05     0.044       4     102 ..      10     109 ..       7     166 .. 0.83

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 1.2e-05
        RB_A   4 saavetvsqLrellsslsdepsekLlelfksc..tedpteeiekrvkelsekflkkyaesseeeessslaeelakkrlklaekLYykvLesilksEkkr 100
                 ++a+++ + L + ++ ++d   ++L++ f+ +  + +  e++e++++ +++k  +   e+ + e+ ++ + ++  k ++la  +Y++ L +i++  ++ 
  KOO24167.1  10 REAMKCEAVLAAEVARHKDRV-AELQKAFEAAraEATKVEHLEATIEAMRQKRFSVEMEAMKREAAAAAEVTALIKSKELADNMYMNSLREIMRTSANE 107
                 678999999999999999775.9******99632666699*********9998886666666666677777888899****************987755 PP

        RB_A 101 ls 102
                  +
  KOO24167.1 108 AQ 109
                 43 PP

>> HMG_box_5  HMG (high mobility group) box 5
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   4.9   3.6e-05      0.13      16      78 ..      16      77 ..       7      86 .. 0.83

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 3.6e-05
   HMG_box_5 16 qsvigdylarfkndrakalkameatwsnmekkekimwikkaaedqkryerelsemrsaaaata 78
                ++v+   +ar k+  a  +ka+ea+ ++  k e++      a  qkr+  e+  m+  aaa+a
  KOO24167.1 16 EAVLAAEVARHKDRVAELQKAFEAARAEATKVEHLEATIE-AMRQKRFSVEMEAMKREAAAAA 77
                67888899****99999****************9987655.568***********88777764 PP

>> Peptidase_M74  Penicillin-insensitive murein endopeptidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.5   1.5      0.11   3.8e+02      98     142 ..      37      81 ..      23     105 .. 0.75
   2 ?   10.5   0.0   9.2e-05      0.33     126     160 ..     154     188 ..     130     189 .] 0.89

  Alignments for each domain:
  == domain 1  score: 0.5 bits;  conditional E-value: 0.11
                    -HHHHHS------B-TTSSSB-TTT--HHHHHHHHHHHHSTTEEE CS
  Peptidase_M74  98 seeereklsalslvkkdklkvdekkwteehaklirlaasdpeveR 142
                     e+ r + ++++ ++++ + +++k+++ e  ++ r aa  +ev+ 
     KOO24167.1  37 FEAARAEATKVEHLEATIEAMRQKRFSVEMEAMKREAAAAAEVTA 81 
                    455666677777777788888888899888888888888888865 PP

  == domain 2  score: 10.5 bits;  conditional E-value: 9.2e-05
                    HHHHHHHHHHHSTTEEEEEE-HHHHHHHHHHHTT- CS
  Peptidase_M74 126 ehaklirlaasdpeveRifvnpaiKkalCeeakgd 160
                    +  +++ +aa +p ++R+ v+p iK al + +++d
     KOO24167.1 154 QYRTVLTAAAMTPWMDRVVVQPYIKPALDKMKNKD 188
                    56789**********************98887766 PP

>> DDE_Tnp_4  DDE superfamily endonuclease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.7   0.2       0.1   3.8e+02      97     129 ..      25      59 ..      10      85 .. 0.67
   2 ?   10.0   0.3   0.00014      0.51     100     134 ..     103     137 ..      68     146 .. 0.80

  Alignments for each domain:
  == domain 1  score: 0.7 bits;  conditional E-value: 0.1
   DDE_Tnp_4  97 kkkkqlseeevefnraia..sarihvErvigrlkg 129
                 ++k++  e +++f  a a      h E +i+ +++
  KOO24167.1  25 RHKDRVAELQKAFEAARAeaTKVEHLEATIEAMRQ 59 
                 56666767776666555411567899999999985 PP

  == domain 2  score: 10.0 bits;  conditional E-value: 0.00014
   DDE_Tnp_4 100 kqlseeevefnraiasarihvErvigrlkgrfril 134
                 +  +e+++ ++ aias ri  E+ +++lk+r r++
  KOO24167.1 103 TSANEAQRDKDAAIASLRIEYEKKFNLLKTRVRTM 137
                 4557899**********************997776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (189 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1828  (0.101958); expected 358.6 (0.02)
Passed bias filter:                      586  (0.0326845); expected 358.6 (0.02)
Passed Vit filter:                        49  (0.002733); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.50u 0.25s 00:00:00.75 Elapsed: 00:00:00.42
# Mc/sec: 1357.46
//
Query:       KOO24168.1  [L=277]
Description: hypothetical protein Ctob_000228 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
        7.6    6.2   8.6       0.65    9.7   3.1    2.1  2  BRD4_CDT  C-terminal domain of bromodomain protein 4


Domain annotation for each model (and alignments):
>> BRD4_CDT  C-terminal domain of bromodomain protein 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.3      0.25   4.5e+03       8      16 ..      97     105 ..      91     107 .. 0.77
   2 ?    9.7   3.1   3.6e-05      0.65       7      21 ..     261     275 ..     258     276 .. 0.93

  Alignments for each domain:
  == domain 1  score: -2.7 bits;  conditional E-value: 0.25
    BRD4_CDT   8 elaRkrEqe 16 
                 el+R rE e
  KOO24168.1  97 ELGRLREAE 105
                 677888766 PP

  == domain 2  score: 9.7 bits;  conditional E-value: 3.6e-05
    BRD4_CDT   7 RelaRkrEqeRRrre 21 
                 +e+aR  EqeRR+re
  KOO24168.1 261 NERARLLEQERRKRE 275
                 79************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (277 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       334  (0.018629); expected 358.6 (0.02)
Passed bias filter:                      258  (0.0143901); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.23s 00:00:00.65 Elapsed: 00:00:00.39
# Mc/sec: 2121.03
//
Query:       KOO24169.1  [L=622]
Description: tRNA (guanine -n2)-methyltransferase-like protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.9e-10   40.2   0.0    9.5e-10   38.5   0.0    1.8  1  UPF0020        Putative RNA methylase family UPF0020
    0.00099   18.9   0.0      0.039   13.6   0.0    2.2  2  N6_N4_Mtase    DNA methylase
     0.0087   15.4   0.0       0.13   11.5   0.0    2.0  2  N6_Mtase       N-6 DNA Methylase
  ------ inclusion threshold ------
       0.19   11.7   1.2       0.52   10.3   1.2    1.8  1  SNN_transmemb  Stannin transmembrane


Domain annotation for each model (and alignments):
>> UPF0020  Putative RNA methylase family UPF0020
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.5   0.0   2.1e-13   9.5e-10       3     145 ..     208     349 ..     207     362 .. 0.85

  Alignments for each domain:
  == domain 1  score: 38.5 bits;  conditional E-value: 2.1e-13
                 SS-SS---SS-HHHHHHHHHHTT--TTS-EEETT-TTSHHHHHHHHHHTT--TTTT----SSHHHHHHHHHHHH--EEEEES-HHHHHHHHHHHHHTT- CS
     UPF0020   3 yRefngpapLketLAaalvrlagwkpgepllDPmCGsGtilIEaallganiapgllrefvlelkaeaeeearaelklygsDldrrvvqgareNaekagv 101
                  R++ g ++L ++L+ ++ +la++++ +  +DP CG+ + l+ aa  ga++         + l+  a + + ++ +  g  +  ++vqg  e   ++g+
  KOO24169.1 208 TRNYIGTTSLDPELSLVMANLARLRQHDLVYDPYCGTAGTLVAAAAFGARVL-------GCDLHGPAIRGQLRTRSGPGKQSWDAAVQGIPETFAAYGL 299
                 5899999*********************************************.......5777777777777888899********************* PP

                 GGGEEEEE--G.GG--....STTS---EEEE----------HHHH.HHHH CS
     UPF0020 102 gdliefsqada.akLr....lkegevdvivtnpPYGerlgskkal.ekLY 145
                    +++ q d  a+L      + g +d+i+t+pPYG+r + ++   ekL 
  KOO24169.1 300 LPPVALIQGDSgAHLAflraVPGGLFDAIITDPPYGIREKPAEVAdEKLL 349
                 *******998633444444767789*************876654446665 PP

>> N6_N4_Mtase  DNA methylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.6   0.0   8.8e-06     0.039     190     222 ..     232     264 ..     219     271 .. 0.90
   2 ?    2.9   0.0     0.017        74       2      15 ..     326     339 ..     325     359 .. 0.81

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 8.8e-06
                  -TT-EEEETT-TTTHHHHHHHHTT-EEEEEESS CS
  N6_N4_Mtase 190 kkgdivlDpFaGSGtTavaakelgrkfiGieie 222
                  ++ d+v Dp++G+  T+vaa++ g + +G++ +
   KOO24169.1 232 RQHDLVYDPYCGTAGTLVAAAAFGARVLGCDLH 264
                  568***************************986 PP

  == domain 2  score: 2.9 bits;  conditional E-value: 0.017
                  EEEEE--SSSSSCS CS
  N6_N4_Mtase   2 dlivtdpPYntgkd 15 
                  d i+tdpPY++ ++
   KOO24169.1 326 DAIITDPPYGIREK 339
                  78********9988 PP

>> N6_Mtase  N-6 DNA Methylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.5   0.0   2.9e-05      0.13      33      66 ..     220     253 ..     206     265 .. 0.92
   2 ?    1.4   0.0     0.034   1.5e+02     126     151 ..     325     348 ..     321     379 .. 0.74

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 2.9e-05
    N6_Mtase  33 evsklivellepksgesvyDpacGsggllvqaek 66 
                 e+s ++++l+  +++  vyDp cG++g lv a+ 
  KOO24169.1 220 ELSLVMANLARLRQHDLVYDPYCGTAGTLVAAAA 253
                 78999*****999999**************9876 PP

  == domain 2  score: 1.4 bits;  conditional E-value: 0.034
    N6_Mtase 126 fdvvvaNppfnqkewkektlekderf 151
                 fd++++ pp++++  ++     de++
  KOO24169.1 325 FDAIITDPPYGIR--EKPAEVADEKL 348
                 8**********99..55555555544 PP

>> SNN_transmemb  Stannin transmembrane
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   1.2   0.00012      0.52      17      31 ..     247     261 ..     245     262 .. 0.96

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.00012
  SNN_transmemb  17 iLIAvAALGALILGC 31 
                    +L+A AA GA +LGC
     KOO24169.1 247 TLVAAAAFGARVLGC 261
                    8************** PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (622 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       454  (0.0253221); expected 358.6 (0.02)
Passed bias filter:                      370  (0.020637); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.54u 0.24s 00:00:00.78 Elapsed: 00:00:00.39
# Mc/sec: 4769.43
//
Query:       KOO24170.1  [L=230]
Description: hypothetical protein Ctob_000227, partial [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (230 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       297  (0.0165653); expected 358.6 (0.02)
Passed bias filter:                      245  (0.013665); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.41u 0.24s 00:00:00.64 Elapsed: 00:00:00.41
# Mc/sec: 1695.49
//
Query:       KOO24171.1  [L=166]
Description: hypothetical protein Ctob_000240 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.036   13.8   0.0      0.048   13.4   0.0    1.2  1  FMN_bind_2  Putative FMN-binding domain


Domain annotation for each model (and alignments):
>> FMN_bind_2  Putative FMN-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.0   2.7e-06     0.048      98     128 ..     115     147 ..     106     164 .. 0.78

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 2.7e-06
                 ..--EEEEEEEEEEEEEEE-..--HHHHHHHHH CS
  FMN_bind_2  98 kvvPTWnYaaVhvyGkakvi..edeeelrkqle 128
                  + P ++Y+ Vh+yG ++ +  ++++ lr+qle
  KOO24171.1 115 AAYPEYDYKIVHAYGAIRAHldDTNDLLREQLE 147
                 56799**************99888888999875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (166 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       348  (0.0194099); expected 358.6 (0.02)
Passed bias filter:                      317  (0.0176809); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.24s 00:00:00.60 Elapsed: 00:00:00.38
# Mc/sec: 1310.90
//
Query:       KOO24172.1  [L=559]
Description: calcium-binding pollen allergen [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.3e-31  105.7  12.1    0.00072   18.9   0.2    7.4  7  EF-hand_1     EF hand
    8.8e-29   97.0   8.4    0.00028   20.6   0.1    7.5  7  EF-hand_6     EF-hand domain
    6.7e-26   90.5   5.7    2.3e-08   34.4   0.4    5.4  4  EF-hand_7     EF-hand domain pair
    6.6e-18   63.3  13.5    0.00018   20.8   0.1    7.5  7  EF-hand_5     EF hand
    1.3e-11   44.1  10.1    0.00018   21.3   0.2    5.7  6  EF-hand_8     EF-hand domain pair
     0.0032   17.4   5.8        3.2    7.8   0.0    4.9  5  EF-hand_4     Cytoskeletal-regulatory complex EF hand
     0.0073   16.6   0.2       0.43   10.9   0.1    3.5  4  SPARC_Ca_bdg  Secreted protein acidic and rich in cysteine Ca


Domain annotation for each model (and alignments):
>> EF-hand_1  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.9   0.2   5.9e-07    0.0015       5      24 ..      41      60 ..      39      62 .. 0.92
   2 !   18.1   0.0   5.1e-07    0.0013       1      25 [.      74      98 ..      74     101 .. 0.90
   3 !   16.5   0.1   1.7e-06    0.0042       2      28 ..     112     138 ..     111     139 .. 0.92
   4 !   12.7   0.0   2.8e-05     0.071       4      25 ..     147     168 ..     144     170 .. 0.91
   5 ?    4.6   0.6     0.011        28       4      27 ..     216     239 ..     214     241 .. 0.90
   6 !   18.9   0.2   2.8e-07   0.00072       2      27 ..     251     276 ..     250     277 .. 0.92
   7 !   17.7   0.0   6.7e-07    0.0017       2      28 ..     491     517 ..     490     518 .. 0.92

  Alignments for each domain:
  == domain 1  score: 17.9 bits;  conditional E-value: 5.9e-07
                HHHHHTTTSSSEEEHHHHHH CS
   EF-hand_1  5 iFrefDkDgdGkIdfeEfke 24
                +F+e+D+++d kIdf Ef++
  KOO24172.1 41 LFAEYDQNQDRKIDFGEFIA 60
                7*****************87 PP

  == domain 2  score: 18.1 bits;  conditional E-value: 5.1e-07
                HHHHHHHHHTTTSSSEEEHHHHHHH CS
   EF-hand_1  1 elkeiFrefDkDgdGkIdfeEfkel 25
                e++  F+ +D+D+dG+++++Ef ++
  KOO24172.1 74 EIRVWFDAADVDRDGTLSISEFFRW 98
                68889*****************875 PP

  == domain 3  score: 16.5 bits;  conditional E-value: 1.7e-06
                 HHHHHHHHTTTSSSEEEHHHHHHHHHH CS
   EF-hand_1   2 lkeiFrefDkDgdGkIdfeEfkellkk 28 
                 l+ +F ++DkD +G++d  Ef +++k+
  KOO24172.1 112 LESAFHVYDKDSTGQLDAIEFEQVCKD 138
                 789********************9997 PP

  == domain 4  score: 12.7 bits;  conditional E-value: 2.8e-05
                 HHHHHHTTTSSSEEEHHHHHHH CS
   EF-hand_1   4 eiFrefDkDgdGkIdfeEfkel 25 
                 eiF+ +D Dg+G++ + E++++
  KOO24172.1 147 EIFSALDNDGSGTVAYGELVSA 168
                 8*****************9976 PP

  == domain 5  score: 4.6 bits;  conditional E-value: 0.011
                 HHHHHHTTTSSSEEEHHHHHHHHH CS
   EF-hand_1   4 eiFrefDkDgdGkIdfeEfkellk 27 
                 +++++f kD +  Id  Ef + ++
  KOO24172.1 216 DLMKVFEKDMSNEIDSMEFFTTMR 239
                 6899***************99997 PP

  == domain 6  score: 18.9 bits;  conditional E-value: 2.8e-07
                 HHHHHHHHTTTSSSEEEHHHHHHHHH CS
   EF-hand_1   2 lkeiFrefDkDgdGkIdfeEfkellk 27 
                 l+ +F+ +D Dg+G I ++E+ e+++
  KOO24172.1 251 LDAVFKSLDDDGNGVIGYDELYEFIR 276
                 799******************99876 PP

  == domain 7  score: 17.7 bits;  conditional E-value: 6.7e-07
                 HHHHHHHHTTTSSSEEEHHHHHHHHHH CS
   EF-hand_1   2 lkeiFrefDkDgdGkIdfeEfkellkk 28 
                 lk ++  +D+D +G+I+  Ef +++++
  KOO24172.1 491 LKTAWVALDVDSSGYISAGEFGSFMNR 517
                 788999******************975 PP

>> EF-hand_6  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.1   0.1   5.9e-05      0.15       5      24 ..      41      60 ..      39      65 .. 0.92
   2 !   15.3   0.0   5.3e-06     0.014       1      23 [.      74      96 ..      74      98 .. 0.91
   3 !   20.6   0.1   1.1e-07   0.00028       2      31 .]     112     140 ..     111     140 .. 0.93
   4 !   12.5   0.0   4.3e-05      0.11       3      25 ..     146     168 ..     145     171 .. 0.90
   5 ?    1.2   0.1      0.18   4.5e+02       6      27 ..     218     239 ..     213     243 .. 0.81
   6 !   18.7   0.2   4.4e-07    0.0011       2      27 ..     251     276 ..     250     283 .. 0.92
   7 !   13.4   0.0   2.1e-05     0.054       2      27 ..     491     516 ..     490     523 .. 0.87

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 5.9e-05
   EF-hand_6  5 aFklfDkdgdGkidaeElrk 24
                +F ++D++ d kid+ E+++
  KOO24172.1 41 LFAEYDQNQDRKIDFGEFIA 60
                7*****************97 PP

  == domain 2  score: 15.3 bits;  conditional E-value: 5.3e-06
   EF-hand_6  1 elreaFklfDkdgdGkidaeElr 23
                e+r  F++ D+d+dG+++++E+ 
  KOO24172.1 74 EIRVWFDAADVDRDGTLSISEFF 96
                68899****************95 PP

  == domain 3  score: 20.6 bits;  conditional E-value: 1.1e-07
   EF-hand_6   2 lreaFklfDkdgdGkidaeElrkalrkalg 31 
                 l++aF+ +Dkd +G++da E+ ++++ +lg
  KOO24172.1 112 LESAFHVYDKDSTGQLDAIEFEQVCK-DLG 140
                 789**********************9.676 PP

  == domain 4  score: 12.5 bits;  conditional E-value: 4.3e-05
   EF-hand_6   3 reaFklfDkdgdGkidaeElrka 25 
                 +e+F ++D+dg+G++ + El++a
  KOO24172.1 146 YEIFSALDNDGSGTVAYGELVSA 168
                 699************99999875 PP

  == domain 5  score: 1.2 bits;  conditional E-value: 0.18
   EF-hand_6   6 FklfDkdgdGkidaeElrkalr 27 
                  k f kd +++id  E+   +r
  KOO24172.1 218 MKVFEKDMSNEIDSMEFFTTMR 239
                 57788999*********98888 PP

  == domain 6  score: 18.7 bits;  conditional E-value: 4.4e-07
   EF-hand_6   2 lreaFklfDkdgdGkidaeElrkalr 27 
                 l+++Fk +D dg+G i ++El  ++r
  KOO24172.1 251 LDAVFKSLDDDGNGVIGYDELYEFIR 276
                 6789******************9998 PP

  == domain 7  score: 13.4 bits;  conditional E-value: 2.1e-05
   EF-hand_6   2 lreaFklfDkdgdGkidaeElrkalr 27 
                 l+ a+ ++D+d +G+i+a E+ ++++
  KOO24172.1 491 LKTAWVALDVDSSGYISAGEFGSFMN 516
                 6778889*****************98 PP

>> EF-hand_7  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.4   0.4   8.9e-12   2.3e-08       6      69 ..      40      98 ..      35     100 .. 0.89
   2 !    9.2   0.1   0.00062       1.6       4      30 ..     112     138 ..     109     143 .. 0.86
   3 !   30.3   0.1   1.6e-10   4.2e-07       3      71 .]     144     276 ..     142     276 .. 0.76
   4 !   12.3   0.0   6.8e-05      0.18       3      30 ..     490     517 ..     488     541 .. 0.84

  Alignments for each domain:
  == domain 1  score: 34.4 bits;  conditional E-value: 8.9e-12
   EF-hand_7  6 eaFkelDtdgdgyldkeellrllrkifqgagegsklsdeelellfkefDtdkdGvisfdEFlkl 69
                + F e+D+++d ++d  e+  +l+     +g  + +  ee++ +f+  D d+dG++s +EF ++
  KOO24172.1 40 MLFAEYDQNQDRKIDFGEFI-ALQP----KGVRDAFGAEEIRVWFDAADVDRDGTLSISEFFRW 98
                67****************99.7774....299999999***********************876 PP

  == domain 2  score: 9.2 bits;  conditional E-value: 0.00062
   EF-hand_7   4 lkeaFkelDtdgdgyldkeellrllrk 30 
                 l+ aF  +D+d +g ld  e++++++ 
  KOO24172.1 112 LESAFHVYDKDSTGQLDAIEFEQVCKD 138
                 7789****************9999985 PP

  == domain 3  score: 30.3 bits;  conditional E-value: 1.6e-10
   EF-hand_7   3 klkeaFkelDtdgdgyldkeellr.............llrkifqga..................................................... 35 
                 + +e+F +lD+dg+g + + el +                                                                           
  KOO24172.1 144 VAYEIFSALDNDGSGTVAYGELVSastptpshdsasdH-------Dpvdttgwiihgrdapnvqselqkllhesgllvvdlmkvfekdmsneidsmeff 235
                 6799*******************967766644444440.......266666666666677778888888888888899988888888888888888888 PP

   EF-hand_7  36 .....gegsklsdee..lellfkefDtdkdGvisfdEFlklyr 71 
                      + g+    e+  l+++fk +D d++Gvi +dE+++++r
  KOO24172.1 236 ttmreRLGFRG--EKrvLDAVFKSLDDDGNGVIGYDELYEFIR 276
                 88855333333..334499********************9986 PP

  == domain 4  score: 12.3 bits;  conditional E-value: 6.8e-05
   EF-hand_7   3 klkeaFkelDtdgdgyldkeellrllrk 30 
                 +lk+a+ +lD+d +gy++  e+ +++ +
  KOO24172.1 490 RLKTAWVALDVDSSGYISAGEFGSFMNR 517
                 799********************98874 PP

>> EF-hand_5  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.7   0.4     0.018        47       4      23 ..      41      60 ..      38      62 .. 0.87
   2 !   20.8   0.1   7.1e-08   0.00018       4      21 ..      78      95 ..      75      99 .. 0.92
   3 !    4.7   0.0    0.0087        22       2      24 ..     113     135 ..     112     136 .. 0.89
   4 !    5.5   0.0    0.0049        12       4      16 ..     148     160 ..     146     165 .. 0.90
   5 ?    3.9   0.1     0.016        41       2      21 ..     215     234 ..     214     241 .. 0.90
   6 !   15.8   0.3   2.8e-06    0.0072       1      24 [.     251     274 ..     251     275 .. 0.94
   7 !   10.9   0.0    0.0001      0.26       7      25 .]     497     515 ..     496     515 .. 0.93

  Alignments for each domain:
  == domain 1  score: 3.7 bits;  conditional E-value: 0.018
                HHHHH-SS-SSCE-HHHHHH CS
   EF-hand_5  4 tFqaiDlNgDGkIskeELkt 23
                +F + D N+D kI++ E+ +
  KOO24172.1 41 LFAEYDQNQDRKIDFGEFIA 60
                6999*************976 PP

  == domain 2  score: 20.8 bits;  conditional E-value: 7.1e-08
                HHHHH-SS-SSCE-HHHH CS
   EF-hand_5  4 tFqaiDlNgDGkIskeEL 21
                +F+a+D+++DG++s++E+
  KOO24172.1 78 WFDAADVDRDGTLSISEF 95
                9****************9 PP

  == domain 3  score: 4.7 bits;  conditional E-value: 0.0087
                 HHHHHHH-SS-SSCE-HHHHHHH CS
   EF-hand_5   2 kdtFqaiDlNgDGkIskeELktl 24 
                 + +F   D++  G++++ E++++
  KOO24172.1 113 ESAFHVYDKDSTGQLDAIEFEQV 135
                 668*****************985 PP

  == domain 4  score: 5.5 bits;  conditional E-value: 0.0049
                 HHHHH-SS-SSCE CS
   EF-hand_5   4 tFqaiDlNgDGkI 16 
                  F+a+D +g+G++
  KOO24172.1 148 IFSALDNDGSGTV 160
                 5**********86 PP

  == domain 5  score: 3.9 bits;  conditional E-value: 0.016
                 HHHHHHH-SS-SSCE-HHHH CS
   EF-hand_5   2 kdtFqaiDlNgDGkIskeEL 21 
                 +d+ + + ++++  I+  E+
  KOO24172.1 215 VDLMKVFEKDMSNEIDSMEF 234
                 688999*************9 PP

  == domain 6  score: 15.8 bits;  conditional E-value: 2.8e-06
                 HHHHHHHH-SS-SSCE-HHHHHHH CS
   EF-hand_5   1 lkdtFqaiDlNgDGkIskeELktl 24 
                 l+++F+ +D +g G I  +EL+++
  KOO24172.1 251 LDAVFKSLDDDGNGVIGYDELYEF 274
                 689*******************98 PP

  == domain 7  score: 10.9 bits;  conditional E-value: 0.0001
                 HH-SS-SSCE-HHHHHHHH CS
   EF-hand_5   7 aiDlNgDGkIskeELktlv 25 
                 a+D++ +G+Is+ E+  ++
  KOO24172.1 497 ALDVDSSGYISAGEFGSFM 515
                 79*************9986 PP

>> EF-hand_8  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.3   0.0     0.014        37      30      51 ..      40      61 ..      39      64 .. 0.91
   2 !   21.3   0.2   7.1e-08   0.00018       2      49 ..      50      96 ..      49      99 .. 0.89
   3 !    5.9   0.0    0.0044        11      29      49 ..     146     166 ..     143     170 .. 0.84
   4 ?    1.4   0.3      0.11   2.8e+02      30      54 ..     216     240 ..     214     241 .. 0.87
   5 !   15.9   1.1   3.3e-06    0.0085       4      50 ..     228     273 ..     226     276 .. 0.89
   6 ?    1.1   0.0      0.14   3.5e+02      35      53 ..     498     516 ..     497     518 .. 0.82

  Alignments for each domain:
  == domain 1  score: 4.3 bits;  conditional E-value: 0.014
   EF-hand_8 30 ilfrefDtdgdGkisfeEFcvl 51
                +lf e D+++d ki+f EF++l
  KOO24172.1 40 MLFAEYDQNQDRKIDFGEFIAL 61
                689999*************987 PP

  == domain 2  score: 21.3 bits;  conditional E-value: 7.1e-08
   EF-hand_8  2 kgkItreelrrilrilglkk....glseeevdilfrefDtdgdGkisfeEFc 49
                + kI++ e+        ++k     +++ee+++ f+++D d+dG++s  EF+
  KOO24172.1 50 DRKIDFGEFIA-----LQPKgvrdAFGAEEIRVWFDAADVDRDGTLSISEFF 96
                789********.....555556669**************************7 PP

  == domain 3  score: 5.9 bits;  conditional E-value: 0.0044
   EF-hand_8  29 dilfrefDtdgdGkisfeEFc 49 
                  ++f+++D dg+G++ + E +
  KOO24172.1 146 YEIFSALDNDGSGTVAYGELV 166
                 689***********9887765 PP

  == domain 4  score: 1.4 bits;  conditional E-value: 0.11
   EF-hand_8  30 ilfrefDtdgdGkisfeEFcvller 54 
                 +l++ f  d ++ i+ +EF+  + +
  KOO24172.1 216 DLMKVFEKDMSNEIDSMEFFTTMRE 240
                 7999***************988765 PP

  == domain 5  score: 15.9 bits;  conditional E-value: 3.3e-06
   EF-hand_8   4 kItreelrril.rilglkkglseeevdilfrefDtdgdGkisfeEFcv 50 
                 +I+  e+ +++   lg +    +  +d++f+ +D dg+G+i+++E ++
  KOO24172.1 228 EIDSMEFFTTMrERLGFR--GEKRVLDAVFKSLDDDGNGVIGYDELYE 273
                 588888899999999999..99999********************987 PP

  == domain 6  score: 1.1 bits;  conditional E-value: 0.14
   EF-hand_8  35 fDtdgdGkisfeEFcvlle 53 
                 +D d +G+is  EF  ++ 
  KOO24172.1 498 LDVDSSGYISAGEFGSFMN 516
                 688999***9999987776 PP

>> EF-hand_4  Cytoskeletal-regulatory complex EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.8   0.0      0.19   4.8e+02      48      66 ..      41      59 ..      18      63 .. 0.80
   2 !    5.2   0.2    0.0076        20      47      65 ..      76      95 ..      71      99 .. 0.84
   3 ?    1.1   0.0      0.15   3.7e+02      42      66 ..     109     133 ..      97     151 .. 0.77
   4 ?   -0.8   0.1      0.58   1.5e+03      33      70 ..     205     239 ..     194     271 .. 0.75
   5 !    7.8   0.0    0.0012       3.2      23      70 ..     469     516 ..     460     534 .. 0.85

  Alignments for each domain:
  == domain 1  score: 0.8 bits;  conditional E-value: 0.19
   EF-hand_4 48 iwdladidedgkldfeefc 66
                ++   d ++d k+df ef+
  KOO24172.1 41 LFAEYDQNQDRKIDFGEFI 59
                555568889*********7 PP

  == domain 2  score: 5.2 bits;  conditional E-value: 0.0076
   EF-hand_4 47 kiw.dladidedgkldfeef 65
                ++w d ad+d dg+l   ef
  KOO24172.1 76 RVWfDAADVDRDGTLSISEF 95
                5664789***********99 PP

  == domain 3  score: 1.1 bits;  conditional E-value: 0.15
   EF-hand_4  42 edklekiwdladidedgkldfeefc 66 
                  + le+ +++ d d+ g+ld  ef 
  KOO24172.1 109 AEMLESAFHVYDKDSTGQLDAIEFE 133
                 678999999***********98884 PP

  == domain 4  score: -0.8 bits;  conditional E-value: 0.58
   EF-hand_4  33 pvlknskleedklekiwdladidedgkldfeefciamr 70 
                  +l++s l    l k+++    d  +++d  ef  +mr
  KOO24172.1 205 KLLHESGLLVVDLMKVFE---KDMSNEIDSMEFFTTMR 239
                 566666666666666665...36667788888888887 PP

  == domain 5  score: 7.8 bits;  conditional E-value: 0.0012
   EF-hand_4  23 dnkltgdkvapvlknskleedklekiwdladidedgkldfeefciamr 70 
                  + +++ k+a+ l    +++++l+  w   d+d+ g +   ef   m 
  KOO24172.1 469 AKDVAQAKAAAELSPKVMDDHRLKTAWVALDVDSSGYISAGEFGSFMN 516
                 56788999999999999**********************999988876 PP

>> SPARC_Ca_bdg  Secreted protein acidic and rich in cysteine Ca binding region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.9   0.1   0.00017      0.43      50     111 ..      34      96 ..       3      98 .. 0.70
   2 ?   -0.0   0.0      0.41   1.1e+03      54     101 ..     110     156 ..      99     167 .. 0.69
   3 ?   -0.6   0.0      0.62   1.6e+03      53      78 ..     248     273 ..     207     278 .. 0.74
   4 ?   -1.6   0.0       1.3   3.4e+03      41      76 ..     476     511 ..     448     516 .. 0.61

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00017
  SPARC_Ca_bdg  50 keckepvawkFsklDtnsdkvlsksELaplraplvkl...ehCikpflescDadkdkkislkEwc 111
                   ++ k+  a  F + D+n+d+ ++  E  +l+ + v+     + i+ +++++D+d+d+++s +E+ 
    KOO24172.1  34 EMQKD--AMLFAEYDQNQDRKIDFGEFIALQPKGVRDafgAEEIRVWFDAADVDRDGTLSISEFF 96 
                   33333..34699***************9999765543111455899*****************96 PP

  == domain 2  score: -0.0 bits;  conditional E-value: 0.41
  SPARC_Ca_bdg  54 epvawkFsklDtnsdkvlsksELaplraplvklehCikpflescDadk 101
                   e ++  F+  D++s + l+  E +++ ++l  + +   + +++ D d 
    KOO24172.1 110 EMLESAFHVYDKDSTGQLDAIEFEQVCKDL-GFGSVAYEIFSALDNDG 156
                   566778999999999999999999998875.34444555555555555 PP

  == domain 3  score: -0.6 bits;  conditional E-value: 0.62
  SPARC_Ca_bdg  53 kepvawkFsklDtnsdkvlsksELap 78 
                   k  +   F++lD + ++v+   EL +
    KOO24172.1 248 KRVLDAVFKSLDDDGNGVIGYDELYE 273
                   45555679999999999999999976 PP

  == domain 4  score: -1.6 bits;  conditional E-value: 1.3
  SPARC_Ca_bdg  41 ekkeeeknlkeckepvawkFsklDtnsdkvlsksEL 76 
                   ++ +e + + +  + ++  +  lD++s +++s  E 
    KOO24172.1 476 KAAAELSPKVMDDHRLKTAWVALDVDSSGYISAGEF 511
                   333334444444556666777888888888777765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (559 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       485  (0.0270511); expected 358.6 (0.02)
Passed bias filter:                      392  (0.021864); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.56u 0.29s 00:00:00.85 Elapsed: 00:00:00.44
# Mc/sec: 3796.63
//
Query:       KOO24173.1  [L=447]
Description: hypothetical protein Ctob_000243 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (447 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       304  (0.0169558); expected 358.6 (0.02)
Passed bias filter:                      254  (0.014167); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.50u 0.25s 00:00:00.75 Elapsed: 00:00:00.43
# Mc/sec: 3135.59
//
Query:       KOO24174.1  [L=648]
Description: pentatricopeptide repeat-containing, partial [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.3e-14   54.0  16.4    7.3e-14   51.6  16.4    2.0  1  Mg_trans_NIPA  Magnesium transporter NIPA


Domain annotation for each model (and alignments):
>> Mg_trans_NIPA  Magnesium transporter NIPA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.6  16.4     4e-18   7.3e-14       3     268 ..      42     320 ..      41     357 .. 0.83

  Alignments for each domain:
  == domain 1  score: 51.6 bits;  conditional E-value: 4e-18
  Mg_trans_NIPA   3 fliGvlLavssslfigssfilkkkgllrlarkgevrageGGyaylkevlWwaGlltmavGeaanfaayafaPatLvtPLGalsvivsavlasllLk 98 
                    f +Gvl+ v++s+ i    +++  +l  l ++ + ++        k+ lW+ G++  +     nfaa a+aPa+++tPL ++  ++     +++ k
     KOO24174.1  42 FGVGVLMGVAGSIGINVGQNMQATALDELPEELKSKP-------HKSKLWIWGMVIFVGFSLINFAALALAPASILTPLESIQFVTNIFYNKFVNK 130
                    5689*************************99999999.......799********9998999***********************9999999999* PP

  Mg_trans_NIPA  99 ekLkllgllGcllailGstvlvihaPkeeeieslkevadllvdpaflvyvilvvvvvl....vlilyveprk......Gk.....tnil..vyitl 177
                     k+    + G  l++lG++  vi+ P     +s++++ ++   p++lvy i+ +++++    + i+y  + k      G+     ++++  v  tl
     KOO24174.1 131 AKISWAMQGGTWLTVLGTVFTVIFGPVGVPCHSVRTLENYWSRPTWLVYLIISLAIAIgsyvTHIVYTRKMKlvrvqtGEpepwaHEMVlpVSFTL 226
                    **************************************************9987665422214455544322122222432222134442456778 PP

  Mg_trans_NIPA 178 csllg..sltvisvkalgiaikltlaGk.aqlkyalawilllvlvicvvlqinyLnkaldifntsivtPvyyvlfttlvivasailfkefleas 268
                     s l+  +  ++  k  +  +   ++G+ + +  +l ++ ++++v+c ++ i  L + l ++n  ++ P+    +  +  va+ i+f+efl + 
     KOO24174.1 227 YSSLAggAQMIVQSKVFSELLAMIFQGNlSIFMGWLLYVEIVLVVACGIIWIVKLTECLGLYNPLLILPLMVGTYILFGGVAGGIFFEEFLLMG 320
                    888751144555668899999999999834677899999999999999*********************998888888889*********9775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (648 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       974  (0.0543254); expected 358.6 (0.02)
Passed bias filter:                      485  (0.0270511); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.63u 0.25s 00:00:00.88 Elapsed: 00:00:00.41
# Mc/sec: 4721.24
//
Query:       KOO24175.1  [L=585]
Description: cre-dnj-16 protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.4e-20   71.3   0.7    1.1e-19   70.3   0.7    1.6  1  DnaJ      DnaJ domain
    2.9e-12   45.7  32.1     0.0051   16.8   0.3    7.6  8  TPR_2     Tetratricopeptide repeat
    1.5e-10   40.4  24.3     0.0093   15.8   0.4    7.0  8  TPR_1     Tetratricopeptide repeat
      1e-09   38.8  32.6      0.013   15.9   0.0    6.3  6  TPR_19    Tetratricopeptide repeat
    2.4e-07   31.3  59.3    0.00025   21.6  13.4    8.2  8  TPR_16    Tetratricopeptide repeat
    0.00022   21.3   7.6    0.00022   21.3   7.6    5.0  5  TPR_9     Tetratricopeptide repeat
    0.00042   20.5  39.5     0.0082   16.4   0.1    7.1  6  TPR_12    Tetratricopeptide repeat
  ------ inclusion threshold ------
      0.024   14.9  11.7      0.059   13.6   0.0    4.5  4  ANAPC3    Anaphase-promoting complex, cyclosome, subunit 3
        1.4    9.1  17.2         10    6.4   0.1    6.2  6  TPR_7     Tetratricopeptide repeat
        9.6    6.0   9.9        3.8    7.3   1.0    4.0  5  TPR_11    TPR repeat


Domain annotation for each model (and alignments):
>> DnaJ  DnaJ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.3   0.7   6.1e-23   1.1e-19       1      63 []     508     575 ..     508     575 .. 0.89

  Alignments for each domain:
  == domain 1  score: 70.3 bits;  conditional E-value: 6.1e-23
                 HHHHHHTSSTTG-HHHHHHHHHHHHHHHSTTTSCCHHHHHH.....HHHHHHHHHHHHTSHHHHHHHH CS
        DnaJ   1 dyYeiLgvskdasedeIkkaYrklalkyHPDknpkdpeaee.....kFkeineAyevLsdpekRkqYD 63 
                 d Ye+Lgv++da+++ Ik aYrklalk+HPDk+++  eae+     +F+++  A  vLsdp kR+qYD
  KOO24175.1 508 DAYELLGVARDANAKVIKDAYRKLALKWHPDKHADADEAERariedEFRKVCLANLVLSDPVKRRQYD 575
                 68*******************************6666555445555*********************9 PP

>> TPR_2  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.9   0.1   0.00011       0.2       4      29 ..      74      99 ..      72     104 .. 0.90
   2 ?   -3.0   0.3       6.4   1.2e+04       1      12 [.     114     125 ..     114     127 .. 0.80
   3 !    6.3   0.0    0.0068        12       6      28 ..     155     177 ..     151     181 .. 0.88
   4 ?    0.2   0.1      0.61   1.1e+03       4      27 ..     234     257 ..     232     261 .. 0.84
   5 ?    0.1   0.0      0.65   1.2e+03       6      22 ..     312     328 ..     308     331 .. 0.88
   6 !   12.0   2.0    0.0001      0.19       8      31 ..     362     385 ..     362     385 .. 0.95
   7 !   15.2   0.8   9.1e-06     0.016       3      31 ..     394     422 ..     392     425 .. 0.93
   8 !   16.8   0.3   2.8e-06    0.0051       2      33 ..     427     458 ..     426     459 .. 0.94

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 0.00011
       TPR_2  4 lynlGlayyklgdyeeAleafekAle 29
                + ++G+a++ ++d++ A++++ek l+
  KOO24175.1 74 YRERGNAAFGRKDFATAERWYEKMLA 99
                789********************987 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 6.4
       TPR_2   1 aealynlGlayy 12 
                 a al nl+ +++
  KOO24175.1 114 AAALSNLAACAL 125
                 679999999886 PP

  == domain 3  score: 6.3 bits;  conditional E-value: 0.0068
       TPR_2   6 nlGlayyklgdyeeAleafekAl 28 
                 + G++++ lg+++ A+ +fe A 
  KOO24175.1 155 RAGRCCIMLGELQAAVGHFEVAY 177
                 679****************9876 PP

  == domain 4  score: 0.2 bits;  conditional E-value: 0.61
       TPR_2   4 lynlGlayyklgdyeeAleafekA 27 
                 + ++++a+ ++ + +eAl +++++
  KOO24175.1 234 HVERARALGAASRVDEALYLCRAV 257
                 6789999999999****9998876 PP

  == domain 5  score: 0.1 bits;  conditional E-value: 0.65
       TPR_2   6 nlGlayyklgdyeeAle 22 
                 +l++++ k+g++ +A+e
  KOO24175.1 312 ALARVLGKRGKFTDAEE 328
                 7999***********87 PP

  == domain 6  score: 12.0 bits;  conditional E-value: 0.0001
       TPR_2   8 GlayyklgdyeeAleafekAleld 31 
                 G+a+y++gd+ +A++a+ +Ale d
  KOO24175.1 362 GNAAYAAGDFVRAAAAYSRALEAD 385
                 89*******************965 PP

  == domain 7  score: 15.2 bits;  conditional E-value: 9.1e-06
       TPR_2   3 alynlGlayyklgdyeeAleafekAleld 31 
                 +l n+++a ++  +++eAl+++++Al+ld
  KOO24175.1 394 LLANRAQARMHEERFAEALADCDAALALD 422
                 689*************************8 PP

  == domain 8  score: 16.8 bits;  conditional E-value: 2.8e-06
       TPR_2   2 ealynlGlayyklgdyeeAleafekAleldPn 33 
                 ++l +++ ++ +l d+++A+ ++ +Al+l+P+
  KOO24175.1 427 KLLLRRAACHVALHDPNRARYDYAAALKLEPT 458
                 6789***************************8 PP

>> TPR_1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.3   0.0   0.00056         1       4      28 ..      74      98 ..      72     101 .. 0.91
   2 ?   -0.4   0.2      0.64   1.1e+03       1      12 [.     114     125 ..     114     128 .. 0.84
   3 ?    0.4   0.0      0.36   6.4e+02       8      25 ..     157     174 ..     151     174 .. 0.88
   4 ?   -2.8   0.0       3.8   6.9e+03       7      25 ..     237     255 ..     234     257 .. 0.73
   5 ?   -0.4   0.0      0.64   1.1e+03       7      22 ..     313     328 ..     312     328 .. 0.87
   6 !   11.3   1.2   0.00013      0.23       8      30 ..     362     384 ..     358     385 .. 0.93
   7 !   15.8   0.4   5.2e-06    0.0093       4      31 ..     395     422 ..     393     425 .. 0.94
   8 !   14.2   0.2   1.6e-05     0.028       2      34 .]     427     459 ..     426     459 .. 0.94

  Alignments for each domain:
  == domain 1  score: 9.3 bits;  conditional E-value: 0.00056
                HHHHHHHHHHTT-HHHHHHHHHHHH CS
       TPR_1  4 lynlGnayfklgkydeAleyyekAL 28
                +  +Gna f  +++  A+  yek L
  KOO24175.1 74 YRERGNAAFGRKDFATAERWYEKML 98
                778*******************977 PP

  == domain 2  score: -0.4 bits;  conditional E-value: 0.64
                 HHHHHHHHHHHH CS
       TPR_1   1 akalynlGnayf 12 
                 a al nl+++ +
  KOO24175.1 114 AAALSNLAACAL 125
                 789******986 PP

  == domain 3  score: 0.4 bits;  conditional E-value: 0.36
                 HHHHHHTT-HHHHHHHHH CS
       TPR_1   8 GnayfklgkydeAleyye 25 
                 G ++  lg+++ A+ ++e
  KOO24175.1 157 GRCCIMLGELQAAVGHFE 174
                 88999********98886 PP

  == domain 4  score: -2.8 bits;  conditional E-value: 3.8
                 HHHHHHHTT-HHHHHHHHH CS
       TPR_1   7 lGnayfklgkydeAleyye 25 
                 ++ a+    + deAl  ++
  KOO24175.1 237 RARALGAASRVDEALYLCR 255
                 6667777788899997775 PP

  == domain 5  score: -0.4 bits;  conditional E-value: 0.64
                 HHHHHHHTT-HHHHHH CS
       TPR_1   7 lGnayfklgkydeAle 22 
                 l+ ++ k gk+ +A+e
  KOO24175.1 313 LARVLGKRGKFTDAEE 328
                 677899********87 PP

  == domain 6  score: 11.3 bits;  conditional E-value: 0.00013
                 HHHHHHTT-HHHHHHHHHHHHHH CS
       TPR_1   8 GnayfklgkydeAleyyekALel 30 
                 Gna +  g++  A ++y++ALe 
  KOO24175.1 362 GNAAYAAGDFVRAAAAYSRALEA 384
                 9********************95 PP

  == domain 7  score: 15.8 bits;  conditional E-value: 5.2e-06
                 HHHHHHHHHHTT-HHHHHHHHHHHHHHS CS
       TPR_1   4 lynlGnayfklgkydeAleyyekALeln 31 
                 l n+++a ++ +++ eAl++++ AL l+
  KOO24175.1 395 LANRAQARMHEERFAEALADCDAALALD 422
                 68************************99 PP

  == domain 8  score: 14.2 bits;  conditional E-value: 1.6e-05
                 HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH CS
       TPR_1   2 kalynlGnayfklgkydeAleyyekALelnPnn 34 
                 k l ++++++  l +++ A  +y  AL+l+P++
  KOO24175.1 427 KLLLRRAACHVALHDPNRARYDYAAALKLEPTC 459
                 6799***************************86 PP

>> TPR_19  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.6   0.1     0.013        23       2      37 ..      82     126 ..      81     131 .. 0.82
   2 !   15.9   0.0   7.5e-06     0.013       6      45 ..     131     170 ..     124     176 .. 0.92
   3 ?   -1.0   0.8       1.5   2.7e+03      24      45 ..     225     251 ..     211     257 .. 0.58
   4 !   14.1   2.1   2.7e-05     0.049       9      66 ..     283     348 ..     275     350 .. 0.79
   5 !   10.4   2.8    0.0004      0.72       1      45 [.     365     412 ..     365     413 .. 0.94
   6 !   14.6   2.3     2e-05     0.036       3      45 ..     404     446 ..     402     463 .. 0.93

  Alignments for each domain:
  == domain 1  score: 5.6 bits;  conditional E-value: 0.013
      TPR_19   2 laegdyaeAlalleqalqe.........dpknaearllLAealla 37 
                 + ++d+a A + +e++l+            ++a+a+ +LA + la
  KOO24175.1  82 FGRKDFATAERWYEKMLATatddcvggmHSDHAAALSNLAACALA 126
                 6789***********997755556666677799999999999987 PP

  == domain 2  score: 15.9 bits;  conditional E-value: 7.5e-06
      TPR_19   6 dyaeAlalleqalqedpknaearllLAeallalgqldeAe 45 
                 d+ +A+++l+ +l++ p +   rl+  ++++ lg+l++A 
  KOO24175.1 131 DPVAAMRRLRPLLAALPRHVKGRLRAGRCCIMLGELQAAV 170
                 899**********************************996 PP

  == domain 3  score: -1.0 bits;  conditional E-value: 1.5
      TPR_19  24 naearllL.....AeallalgqldeAe 45 
                  + a  lL     A+al a+ ++deA 
  KOO24175.1 225 KQHANRLLshverARALGAASRVDEAL 251
                 333333334444499999999999996 PP

  == domain 4  score: 14.1 bits;  conditional E-value: 2.7e-05
      TPR_19   9 eAlalleqalqe........dpknaearllLAeallalgqldeAealLdalpeedpddaryasLlA 66 
                 +A++  e al+e        + + +e+ l+LA++l + g +++Ae+ L  l ++ + +++ ++++A
  KOO24175.1 283 QAQQEAEMALAEhlpgpsagADDEEELVLALARVLGKRGKFTDAEERLLSLARSRQAESDGRAARA 348
                 56666666665554544444667999*******************************999988887 PP

  == domain 5  score: 10.4 bits;  conditional E-value: 0.0004
      TPR_19   1 llaegdyaeAlalleqalqedpk...naearllLAeallalgqldeAe 45 
                 ++a+gd+ +A+a++++al++d +    + ++++ A+a +   +++eA 
  KOO24175.1 365 AYAAGDFVRAAAAYSRALEADVEgclRPHLLANRAQARMHEERFAEAL 412
                 589*****************99999999999999************97 PP

  == domain 6  score: 14.6 bits;  conditional E-value: 2e-05
      TPR_19   3 aegdyaeAlalleqalqedpknaearllLAeallalgqldeAe 45 
                  e+++aeAla   +al+ d+++  ++l+ A +++al +++ A+
  KOO24175.1 404 HEERFAEALADCDAALALDAHSVKLLLRRAACHVALHDPNRAR 446
                 5899************************************997 PP

>> TPR_16  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.4   0.1   0.00092       1.7      37      66 ..      74     103 ..      71     104 .. 0.91
   2 ?    2.1   0.7      0.18   3.2e+02      31      47 ..     111     127 ..     107     132 .. 0.88
   3 !   12.7   0.1   8.5e-05      0.15      14      62 ..     133     179 ..     131     185 .. 0.89
   4 ?    2.5   1.0      0.13   2.4e+02      33      61 ..     230     258 ..     209     263 .. 0.79
   5 !    9.8   3.4   0.00067       1.2       1      41 [.     311     351 ..     311     352 .. 0.87
   6 !   21.6  13.4   1.4e-07   0.00025       4      65 ..     362     423 ..     360     426 .. 0.94
   7 ?   -0.4   1.2         1   1.9e+03       8      28 ..     437     457 ..     430     480 .. 0.81
   8 ?   -0.7   0.0       1.3   2.4e+03      30      46 ..     503     519 ..     499     528 .. 0.80

  Alignments for each domain:
  == domain 1  score: 9.4 bits;  conditional E-value: 0.00092
      TPR_16  37 llllgdaalrqgrlaeAaalyraalraapd 66 
                 + ++g+aa+ ++++a A+ +y+++l+ a d
  KOO24175.1  74 YRERGNAAFGRKDFATAERWYEKMLATATD 103
                 6789********************988766 PP

  == domain 2  score: 2.1 bits;  conditional E-value: 0.18
      TPR_16  31 PdaaeAllllgdaalrq 47 
                 +d+a+Al +l+ +al++
  KOO24175.1 111 SDHAAALSNLAACALAR 127
                 89************986 PP

  == domain 3  score: 12.7 bits;  conditional E-value: 8.5e-05
      TPR_16  14 ddAaaaleaalkrdpssPdaaeAllllgdaalrqgrlaeAaalyraal.r 62 
                  +A ++l+ +l++    P+++  +l  g+++  +g+l++A+  ++ a+  
  KOO24175.1 133 VAAMRRLRPLLAAL---PRHVKGRLRAGRCCIMLGELQAAVGHFEVAYsV 179
                 58999*********...**************************9999864 PP

  == domain 4  score: 2.5 bits;  conditional E-value: 0.13
      TPR_16  33 aaeAllllgdaalrqgrlaeAaalyraal 61 
                 +  ++ ++++a+ +++r++eA+ l+ra  
  KOO24175.1 230 RLLSHVERARALGAASRVDEALYLCRAVC 258
                 5668999999999*********9999975 PP

  == domain 5  score: 9.8 bits;  conditional E-value: 0.00067
      TPR_16   1 lalaraalragdyddAaaaleaalkrdpssPdaaeAllllg 41 
                 lalar + ++g+++dA+++l  + +++  ++d ++A+ l+g
  KOO24175.1 311 LALARVLGKRGKFTDAEERLLSLARSRQAESDGRAARALRG 351
                 79**********************99988888777777666 PP

  == domain 6  score: 21.6 bits;  conditional E-value: 1.4e-07
      TPR_16   4 araalragdyddAaaaleaalkrdpssPdaaeAllllgdaalrqgrlaeAaalyraalraap 65 
                 ++aa++agd+ +Aaaa+ +al++d +  ++++ l ++++a+ +  r+aeA+a ++aal+ ++
  KOO24175.1 362 GNAAYAAGDFVRAAAAYSRALEADVEGCLRPHLLANRAQARMHEERFAEALADCDAALALDA 423
                 89**********************99999****************************98765 PP

  == domain 7  score: -0.4 bits;  conditional E-value: 1
      TPR_16   8 lragdyddAaaaleaalkrdp 28 
                 +++ d+ +A+  + aalk+ p
  KOO24175.1 437 VALHDPNRARYDYAAALKLEP 457
                 677888999999999999884 PP

  == domain 8  score: -0.7 bits;  conditional E-value: 1.3
      TPR_16  30 sPdaaeAllllgdaalr 46 
                 + d  +A+ llg+a+ +
  KOO24175.1 503 ELDEFDAYELLGVARDA 519
                 567899*******9865 PP

>> TPR_9  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.0   0.0     0.032        56      27      61 ..      69     103 ..      64     121 .. 0.82
   2 ?    5.1   0.8     0.014        26       5      54 ..     126     175 ..     120     186 .. 0.86
   3 ?   -3.4   0.5       6.2   1.1e+04      38      67 ..     316     348 ..     308     354 .. 0.48
   4 !    6.9   1.1    0.0038       6.9       5      51 ..     365     414 ..     362     414 .. 0.85
   5 !   21.3   7.6   1.2e-07   0.00022       6      61 ..     403     467 ..     395     480 .. 0.85

  Alignments for each domain:
  == domain 1  score: 4.0 bits;  conditional E-value: 0.032
       TPR_9  27 ddpeerrdRGlllaqlGclsaAladLeaylalapd 61 
                 d+ + +r+RG + + + ++++A +  e +la a d
  KOO24175.1  69 DTLSTYRERGNAAFGRKDFATAERWYEKMLATATD 103
                 66778999999999999999999999999976654 PP

  == domain 2  score: 5.1 bits;  conditional E-value: 0.014
       TPR_9   5 aireedweralavverllllaPddpeerrdRGlllaqlGclsaAladLea 54 
                 a ++ d  +a++ +  ll+  P+++  r+  G++   lG l+aA+  +e 
  KOO24175.1 126 AREPPDPVAAMRRLRPLLAALPRHVKGRLRAGRCCIMLGELQAAVGHFEV 175
                 55666778888888899999*************************99885 PP

  == domain 3  score: -3.4 bits;  conditional E-value: 6.2
       TPR_9  38 llaqlGclsaAladLeayl..alap.dapdaea 67 
                 +l ++G +  A + L   +  ++a+ d ++a+a
  KOO24175.1 316 VLGKRGKFTDAEERLLSLArsRQAEsDGRAARA 348
                 555555555555555444433222223333433 PP

  == domain 4  score: 6.9 bits;  conditional E-value: 0.0038
       TPR_9   5 aireedweralavverllllaPd...dpeerrdRGlllaqlGclsaAlad 51 
                 a  + d+ ra a++ r l  + +   +p+++  R++++++ +++++Alad
  KOO24175.1 365 AYAAGDFVRAAAAYSRALEADVEgclRPHLLANRAQARMHEERFAEALAD 414
                 5677899999999999999955433489********************98 PP

  == domain 5  score: 21.3 bits;  conditional E-value: 1.2e-07
       TPR_9   6 ireedweralavverllllaPddpeerrdRGlllaqlGclsaAladLeaylalap.........d 61 
                 + ee++++ala ++  l+l+ +++ +++ R+ +++ l +++ A+ d  a+l l+p          
  KOO24175.1 403 MHEERFAEALADCDAALALDAHSVKLLLRRAACHVALHDPNRARYDYAAALKLEPtcqlasdflR 467
                 789****************************************************6666655552 PP

>> TPR_12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   0.1   4.6e-06    0.0082       1      58 [.      69     127 ..      69     131 .. 0.91
   2 ?    3.0   0.0     0.069   1.2e+02      51      72 ..     156     177 ..     153     179 .. 0.88
   3 !    6.4   0.8    0.0059        11      29      67 ..     217     253 ..     209     261 .. 0.85
   4 ?   -2.0   0.1       2.5   4.5e+03      55      73 ..     275     293 ..     273     293 .. 0.82
   5 ?    1.9   6.2      0.16   2.8e+02       6      73 ..     311     383 ..     306     386 .. 0.77
   6 ?    5.5   7.6     0.012        21       6      73 ..     395     454 ..     390     456 .. 0.87

  Alignments for each domain:
  == domain 1  score: 16.4 bits;  conditional E-value: 4.6e-06
      TPR_12   1 dvatalnnlaavlrrlgrydeAlellekaleia.rrllGpdhpltattlrnLgrlyral 58 
                 d+++++++++++ + +++++ A++++ek l+ a     G+ h + a++l nL+ + +a+
  KOO24175.1  69 DTLSTYRERGNAAFGRKDFATAERWYEKMLATAtDDCVGGMHSDHAAALSNLAACALAR 127
                 57889999*************************6666*****************98765 PP

  == domain 2  score: 3.0 bits;  conditional E-value: 0.069
      TPR_12  51 LgrlyralgryeeAlelleeal 72 
                  gr++ +lg++++A+ ++e a+
  KOO24175.1 156 AGRCCIMLGELQAAVGHFEVAY 177
                 699**************99887 PP

  == domain 3  score: 6.4 bits;  conditional E-value: 0.0059
      TPR_12  29 aleiarrllGpdhpltattlrnLgrlyralgryeeAlel 67 
                 a  +++++ G++h++ + +    +r++ a+ r +eAl+l
  KOO24175.1 217 A--AQQAADGKQHANRLLSHVERARALGAASRVDEALYL 253
                 3..335579***************************986 PP

  == domain 4  score: -2.0 bits;  conditional E-value: 2.5
      TPR_12  55 yralgryeeAlelleeala 73 
                 ++ +gr+ +A++  e ala
  KOO24175.1 275 LESSGRLWQAQQEAEMALA 293
                 5678999999999999986 PP

  == domain 5  score: 1.9 bits;  conditional E-value: 0.16
      TPR_12   6 lnnlaavlrrlgrydeAlellekaleiarrllGpdhpltattlrnL.........grlyralgryeeAlelleeala 73 
                 l  la vl ++g++++A+e l    + +++    d   +a++lr+L         g + +a+g++  A +++ +al+
  KOO24175.1 311 L-ALARVLGKRGKFTDAEERLLSLARSRQAE--SDG-RAARALRGLragmqlkadGNAAYAAGDFVRAAAAYSRALE 383
                 4.69999999999999999999888877777..555.5889988887777777777777788888888888888877 PP

  == domain 6  score: 5.5 bits;  conditional E-value: 0.012
      TPR_12   6 lnnlaavlrrlgrydeAlellekaleiarrllGpdhpltattlrnLgrlyralgryeeAlelleeala 73 
                 l n+a++ ++ +r++eAl+ +++al++        h   +  l   + ++ al ++  A++ +  al+
  KOO24175.1 395 LANRAQARMHEERFAEALADCDAALALD-----A-H--SVKLLLRRAACHVALHDPNRARYDYAAALK 454
                 4499*********************999.....4.6..788999999999999999999999998886 PP

>> ANAPC3  Anaphase-promoting complex, cyclosome, subunit 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.0   3.3e-05     0.059       4      80 ..      86     174 ..      84     176 .. 0.84
   2 ?   -1.4   0.1       1.6   2.9e+03      63      77 ..     238     252 ..     214     274 .. 0.57
   3 ?    3.9   0.0     0.035        62       7      49 ..     287     333 ..     281     349 .. 0.73
   4 ?   -0.2   2.6      0.65   1.2e+03      28      76 ..     394     446 ..     369     463 .. 0.72

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 3.3e-05
                 -HHHHHHHHHHHH..........HHH--HHHHHHHHHHHHHTT-..HHHHHHHHHCT.SHHHC-HHHHHHHHHHHHHTT-HHHHHHHH- CS
      ANAPC3   4 nyknAiflaerll.........aaetespedayllAlclylngq..ykrAyellrka.klnskslgcrylfAqcllkLkkyeeAiaaLe 80 
                 ++ +A+ ++e++l          ++++++ ++  lA c + ++      A++ lr++    +++ + r+ +++c++ L++++ A+ ++e
  KOO24175.1  86 DFATAERWYEKMLatatddcvgGMHSDHAAALSNLAACALAREPpdPVAAMRRLRPLlAALPRHVKGRLRAGRCCIMLGELQAAVGHFE 174
                 6889*********776665543366666666666999999998544899************************************9998 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 1.6
                 HHHHHHTT-HHHHHH CS
      ANAPC3  63 AqcllkLkkyeeAia 77 
                 A++l + ++++eA+ 
  KOO24175.1 238 ARALGAASRVDEALY 252
                 344444444444433 PP

  == domain 3  score: 3.9 bits;  conditional E-value: 0.035
                 HHHHHHHHHH....HHH--HHHHHH.HHHHHHHTT-HHHHHHHHHCT CS
      ANAPC3   7 nAiflaerll...aaetespedayl.lAlclylngqykrAyellrka 49 
                 +A++ +   l   +a ++++e + l lA +l ++g+++ A e l ++
  KOO24175.1 287 EAEMALAEHLpgpSAGADDEEELVLaLARVLGKRGKFTDAEERLLSL 333
                 555555555545447788888866658*************9887766 PP

  == domain 4  score: -0.2 bits;  conditional E-value: 0.65
                 HH...HHHHHHTT-HHHHHHHHHCT.SHHHC-HHHHHHHHHHHHHTT-HHHHH CS
      ANAPC3  28 ll...AlclylngqykrAyellrka.klnskslgcrylfAqcllkLkkyeeAi 76 
                 ll   A++  + +++ +A+  ++ a  l+ +s + ++  A c ++L+  + A+
  KOO24175.1 394 LLanrAQARMHEERFAEALADCDAAlALDAHSVKLLLRRAACHVALHDPNRAR 446
                 55555777777778888888888888888888888888888888887766654 PP

>> TPR_7  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.4   0.1    0.0057        10      13      31 ..      85     103 ..      73     104 .. 0.81
   2 ?    0.5   0.0      0.43   7.6e+02       2      23 ..     160     174 ..     154     180 .. 0.57
   3 ?   -1.8   0.1       2.3   4.2e+03       6      19 ..     279     292 ..     275     294 .. 0.84
   4 ?    3.3   0.1     0.058     1e+02       3      23 ..     311     331 ..     309     346 .. 0.83
   5 ?    2.3   0.1      0.11     2e+02      11      32 ..     367     386 ..     362     389 .. 0.75
   6 ?    3.2   0.6     0.062   1.1e+02       2      29 ..     395     422 ..     394     444 .. 0.89

  Alignments for each domain:
  == domain 1  score: 6.4 bits;  conditional E-value: 0.0057
       TPR_7  13 GdyeeAielyeqsLaltkd 31 
                  d+++A++ ye++La++ d
  KOO24175.1  85 KDFATAERWYEKMLATATD 103
                 69************98876 PP

  == domain 2  score: 0.5 bits;  conditional E-value: 0.43
       TPR_7   2 LlnLarlysrlGdyeeAielye 23 
                 +  L+       + + A++++e
  KOO24175.1 160 CIMLG-------ELQAAVGHFE 174
                 44455.......5555555554 PP

  == domain 3  score: -1.8 bits;  conditional E-value: 2.3
       TPR_7   6 arlysrlGdyeeAi 19 
                 +rl++++++ e A+
  KOO24175.1 279 GRLWQAQQEAEMAL 292
                 89*****9999886 PP

  == domain 4  score: 3.3 bits;  conditional E-value: 0.058
       TPR_7   3 lnLarlysrlGdyeeAielye 23 
                 l+Lar+  ++G++ +A+e + 
  KOO24175.1 311 LALARVLGKRGKFTDAEERLL 331
                 79**************99765 PP

  == domain 5  score: 2.3 bits;  conditional E-value: 0.11
       TPR_7  11 rlGdyeeAielyeqsLaltkdp 32 
                 + Gd+ +A+  y +  al+ d 
  KOO24175.1 367 AAGDFVRAAAAYSR--ALEADV 386
                 56************..555554 PP

  == domain 6  score: 3.2 bits;  conditional E-value: 0.062
       TPR_7   2 LlnLarlysrlGdyeeAielyeqsLalt 29 
                 L n a+++  + +++eA+  + ++Lal+
  KOO24175.1 395 LANRAQARMHEERFAEALADCDAALALD 422
                 7899*******************77775 PP

>> TPR_11  TPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.0         3   5.3e+03      20      37 ..      63      80 ..      62      82 .. 0.78
   2 ?    7.3   1.0    0.0021       3.8       1      23 [.     362     384 ..     362     386 .. 0.94
   3 ?    0.9   0.0       0.2   3.6e+02       7      34 ..     405     432 ..     399     439 .. 0.78
   4 ?    0.1   0.2      0.38   6.8e+02      13      26 ..     445     458 ..     443     458 .. 0.86
   5 ?   -2.5   0.0       2.5   4.4e+03      28      37 ..     507     516 ..     505     517 .. 0.83

  Alignments for each domain:
  == domain 1  score: -2.8 bits;  conditional E-value: 3
      TPR_11 20 AlkldPdnaeayynLGla 37
                A ++ +d  + y ++G+a
  KOO24175.1 63 ATAIVNDTLSTYRERGNA 80
                778888888889999987 PP

  == domain 2  score: 7.3 bits;  conditional E-value: 0.0021
      TPR_11   1 GdayyeqGkyeeAieaYkkAlkl 23 
                 G+a y+ G++  A +aY++Al+ 
  KOO24175.1 362 GNAAYAAGDFVRAAAAYSRALEA 384
                 99*******************85 PP

  == domain 3  score: 0.9 bits;  conditional E-value: 0.2
      TPR_11   7 qGkyeeAieaYkkAlkldPdnaeayynL 34 
                   ++ eA+++  +Al+ld  ++ +++ +
  KOO24175.1 405 EERFAEALADCDAALALDAHSVKLLLRR 432
                 56899*************8877766655 PP

  == domain 4  score: 0.1 bits;  conditional E-value: 0.38
      TPR_11  13 AieaYkkAlkldPd 26 
                 A  +Y +Alkl P+
  KOO24175.1 445 ARYDYAAALKLEPT 458
                 8889*******995 PP

  == domain 5  score: -2.5 bits;  conditional E-value: 2.5
      TPR_11  28 aeayynLGla 37 
                  +ay  LG+a
  KOO24175.1 507 FDAYELLGVA 516
                 699*****87 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (585 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       523  (0.0291706); expected 358.6 (0.02)
Passed bias filter:                      337  (0.0187964); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                        15  (0.000836633); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.59u 0.22s 00:00:00.81 Elapsed: 00:00:00.42
# Mc/sec: 4156.40
//
Query:       KOO24176.1  [L=1301]
Description: hypothetical protein Ctob_000237 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.1e-65  221.9  20.8    1.5e-37  129.2  11.5    2.2  2  Sulfate_transp  Sulfate permease family
    7.1e-26   91.6  14.2    7.1e-26   91.6  14.2    2.7  3  FA_desaturase   Fatty acid desaturase
    7.9e-11   41.6   0.0    1.5e-10   40.7   0.0    1.5  1  STAS            STAS domain
    1.3e-05   25.3   0.0      3e-05   24.1   0.0    1.5  1  Cyt-b5          Cytochrome b5-like Heme/Steroid binding domai
  ------ inclusion threshold ------
       0.23   11.8  10.2      0.028   14.8   4.1    2.6  2  MFS_MOT1        Molybdate transporter of MFS superfamily


Domain annotation for each model (and alignments):
>> Sulfate_transp  Sulfate permease family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  129.2  11.5   4.3e-41   1.5e-37       3     212 ..     592     846 ..     590     882 .. 0.89
   2 !   97.9   1.8   1.4e-31     5e-28     229     380 .]     939    1095 ..     917    1095 .. 0.86

  Alignments for each domain:
  == domain 1  score: 129.2 bits;  conditional E-value: 4.3e-41
  Sulfate_transp   3 gDliaGitvallaiPqalayallaglppiygLyssvvpqlvyalfGtsrqlavGpvavlslivgeiiakv......................... 72 
                      D+ aG  v +l +Pq+l+ya +aglp+i gLys   p ++y++fGtsrql +G+va++sl++  +ia+                          
      KOO24176.1 592 PDICAGFAVSFLIVPQGLSYAGIAGLPAIRGLYSDYAPLFMYVIFGTSRQLQIGAVAIVSLLTFDTIASQanydmlkkladsmsvaastnsslag 686
                     69******************************************************************999***************999999999 PP

  Sulfate_transp  73 ...........aeee...pekgieiattltllaGviqvllGllRLgflveflseavlsGfiaGaaivillsqikvllgle.rvskkeslvsvlss 152
                                a  +     k++ei+++l++ +Gv+++++G+ ++g++ e+l+ +v+s+f a+aai+i l q+ +++g +  v++++ l+  + s
      KOO24176.1 687 lanqtlwnsleA--QsalITKQVEISSLLAFYCGVFSFVIGVTKFGYILELLAPPVISAFSASAAITIGLGQLRSFFGFSrDVTNVSTLHMIVGS 779
                     988888887652..1445889***********************************************************99999999999999* PP

  Sulfate_transp 153 lftnlekvnlakvvlgllllvvLlvtkellkklkkl.......lvipapaelvavivatlvsaifel 212
                     l++ +++vn ++  ++++ l +L++ k+l + +  +          ++++++++ i+a+lv++  +l
      KOO24176.1 780 LIEFASTVNGLASWTAVVWLCLLFLFKKLGRMKGPKaygfpvfKPFKFIGPILVCIIAILVTWQSKL 846
                     *********9999***************9998877799*7764445566677778888888776644 PP

  == domain 2  score: 97.9 bits;  conditional E-value: 1.4e-31
  Sulfate_transp  229 pelslpkvdwsllsallpdalaialvglleaiavsksldkkkg....ykvdsnkELvAlGfsNilsslfgglpatgafsrsavnikaGaktql 317 
                      p++  p+++  +  +ll++a++i++v +le+ia++k +++k+      ++d+ +E vAlGf+Ni+s+++gg+p++g+fsr+a+n ++Ga +++
      KOO24176.1  939 PNFVRPQFEKHTSGELLINAFVITIVMSLESIAIAKLMAQKNThlgpNTLDVAQEYVALGFANIFSAITGGYPISGSFSRTALNDEVGATSPI 1031
                      3344455667778899************************8763333589******************************************* PP

  Sulfate_transp  318 sglvsalvvllvllv..ltplleyiPkavLaaiiivagkglLvelkelkklwklskldflillat 380 
                      s lv a++v ++  +  ++p+++y+P+  L+a++++a+ + L+++  lk l   s  d++i++ t
      KOO24176.1 1032 SVLVVAILVGIITKIasIAPVFFYLPQNCLSAVVLIALQN-LIDFGILKWLLVNSVKDAFIWVTT 1095
                      ********99986542289*********************.*******999999********976 PP

>> FA_desaturase  Fatty acid desaturase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   91.6  14.2     2e-29   7.1e-26       7     252 ..     177     413 ..     167     415 .. 0.64
   2 ?   -3.1   1.4       1.5   5.5e+03     122     170 ..     755     803 ..     711     851 .. 0.58
   3 ?   -2.6   1.2       1.1     4e+03     132     171 ..    1077    1116 ..    1033    1148 .. 0.65

  Alignments for each domain:
  == domain 1  score: 91.6 bits;  conditional E-value: 2e-29
  FA_desaturase   7 llalllglfllgitgslaHeaaHgalfkkrklnrwlndllgallglplgisysawrisHlrHHaytngpdeDpdlaplal.........srfeglf 93 
                    + ++ ++++ ++++g+l H+  Hg  +   + +r +         l+ g+s ++w+  H++HHa tn+ + D d+a l++         +  + l+
     KOO24176.1 177 ATVVCYAVS-NTLAGWLSHDYVHG-RSPFSMAMRGF-------GELIGGMSTTWWSMKHNMHHALTNEIGYDEDVA-LEPaiylwqpdpKVDSWLR 262
                    222556666.77777********8.22122334444.......6666999***************66666666665.2334569866655555555 PP

  FA_desaturase  94 ryllrlllgllvlgwllalvlglwlrrlarrrapsksrrrkwrllawlllllawlglwlalllllglall...lwlvplllllfllalvlnyveHy 186
                    +y+  ++ +++ + +l+      w+ +         ++  kw  +  ++ l+   + w+a++++l+  ++   +wl  ll++ +++      v H+
     KOO24176.1 263 KYQHLYWPIPFSVLFLY------WRFDSI-------KYVMKWKKWNEAARLA---VHWAAFCAFLPAKAVflgVWLSGLLTATIVT------VTHQ 336
                    55666666666666433......222222.......2222333333333333...2222222222222111116666666665533......3333 PP

  FA_desaturase 187 g...........gdwgerqvetsasirsaswllnlltgnlnyHieHHlfPgvpwyrLpelhrrlrellpehglpyrs 252
                                 d+ e q++ ++++++++w++++l+g++++++eHHlfP++p y++ +lh+ l+e ++eh+l +r+
     KOO24176.1 337 SeemfinenlrkYDFCEAQFRSTRDAMCSNWFSDILWGGMQWQLEHHLFPTMPRYKYKALHPLLKEWAREHKLEFRT 413
                    33334777778999*********************************************************998875 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 1.5
  FA_desaturase 122 arrrapsksrrrkwrllawlllllawlglwlalllllglalllwlvpll 170
                    ++ r ++  +r    + ++ +++ +++ ++  + +l+++ +++wl  l+
     KOO24176.1 755 GQLRSFFGFSRDVTNVSTLHMIVGSLIEFASTVNGLASWTAVVWLCLLF 803
                    4444444444433333333333333333333333333332222222222 PP

  == domain 3  score: -2.6 bits;  conditional E-value: 1.1
  FA_desaturase  132 rrkwrllawlllllawlglwlalllllglalllwlvplll 171 
                       kw l+  +  +++w+ +++++l+l+   +ll+++   +
     KOO24176.1 1077 ILKWLLVNSVKDAFIWVTTFIGVLFLGVEIGLLIGASSSF 1116
                     3447777777777777777777777665554444444443 PP

>> STAS  STAS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.7   0.0   4.1e-14   1.5e-10       7     117 .]    1151    1260 ..    1145    1260 .. 0.93

  Alignments for each domain:
  == domain 1  score: 40.7 bits;  conditional E-value: 4.1e-14
                  CTTEEEEEEEEEESHHHHHHHHHHHHHHHHCCC........-SEEEEEEEEEEEE-HHHHHHHHHHHHHHHHTT-EEEEES--HHHHHHHHHTTCGG CS
        STAS    7 iegililrldgpidfanaesfkeklkravgeepervekkeslkslildlsavsfiDssGvraLkeilkelkrigvevvlvnikpevreklektgffd 103 
                   ++i+i++ +g ++f+na+++   ++ +v + +        +k ++ld+ av+f+Ds+ +++  e+ ++l++ gv + + +++ +v   l ++g++ 
  KOO24176.1 1151 AQDIYIVKPEGTLFFGNAPRLAHMITTKVTDCQ-------FIKGVVLDMCAVPFVDSTFIQTATELTEQLNACGVILTITGPNNSVMGSLVRSGLLS 1240
                  5899***************************97.......79*****************************************************99 PP

                  CC........SEEESSHHHH CS
        STAS  104 eve......eeklfltvhdA 117 
                  +v        +++fl+++dA
  KOO24176.1 1241 KVAhqcgneASWVFLSIGDA 1260
                  99888888788999988887 PP

>> Cyt-b5  Cytochrome b5-like Heme/Steroid binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.1   0.0   8.3e-09     3e-05      16      67 ..      59     108 ..      47     142 .. 0.86

  Alignments for each domain:
  == domain 1  score: 24.1 bits;  conditional E-value: 8.3e-09
                 EEETTEEEECTTTCCCSTTCSHHHHTTTTSBBHHHHHHTTGGCHHHHHHHHG CS
      Cyt-b5  16 vairgkVYDvskflskhpGgesailkyaGkDateafksvvhsekdaekllkk 67 
                 v i+++ YD++++   hp g+ +i++y++ Date +  + hs+k a  ++k+
  KOO24176.1  59 VRIDDEWYDLTNWRAAHPAGAHWIDAYRNFDATEVMYGF-HSDK-AMGMIKR 108
                 6688888********************************.9888.5555554 PP

>> MFS_MOT1  Molybdate transporter of MFS superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.3       1.2   4.2e+03      73     108 ..     715     749 ..     692     757 .. 0.75
   2 ?   14.8   4.1   7.8e-06     0.028      25     107 ..     971    1068 ..     953    1072 .. 0.85

  Alignments for each domain:
  == domain 1  score: -1.8 bits;  conditional E-value: 1.2
    MFS_MOT1  73 illGlvllllgltgllerllrliPksvlgglllgaG 108
                 +  G++ +++g+t  +  +l+l+  +v+ +  + a+
  KOO24176.1 715 FYCGVFSFVIGVTK-FGYILELLAPPVISAFSASAA 749
                 56789999999997.788888888888877666555 PP

  == domain 2  score: 14.8 bits;  conditional E-value: 7.8e-06
    MFS_MOT1   25 a...............slsltalllsvGlmnlltglfggvPmc.hgAgglaaqyrfgartgaagillGlvllllgltgllerllrliPksvlgglll 105 
                  a               +l++++  + +G++n+++++ gg P++   +  ++ + + ga +  +++++++++ +++ + ++  +  ++P+  l +++l
  KOO24176.1  971 AiaklmaqknthlgpnTLDVAQEYVALGFANIFSAITGGYPISgSFSRTALND-EVGATSPISVLVVAILVGIITKIASIAPVFFYLPQNCLSAVVL 1066
                  1444446677788888999************************9999999999.55**************************************999 PP

    MFS_MOT1  106 ga 107 
                  +a
  KOO24176.1 1067 IA 1068
                  76 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1301 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       618  (0.0344693); expected 358.6 (0.02)
Passed bias filter:                      377  (0.0210274); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.80u 0.29s 00:00:01.09 Elapsed: 00:00:00.47
# Mc/sec: 8405.15
//
Query:       KOO24177.1  [L=4078]
Description: DNA-dependent protein kinase catalytic subunit, partial [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    7.9e-41  140.5   0.0    1.4e-40  139.7   0.0    1.4  1  PI3_PI4_kinase  Phosphatidylinositol 3- and 4-kinase
    4.6e-13   48.9   0.0    1.1e-06   27.8   0.0    2.7  2  NUC194          NUC194 domain
    1.1e-10   41.3   0.3    2.7e-10   40.1   0.3    1.7  1  R3H             R3H domain
    8.1e-09   35.1   0.0    2.7e-08   33.4   0.0    1.8  2  FAT             FAT domain


Domain annotation for each model (and alignments):
>> PI3_PI4_kinase  Phosphatidylinositol 3- and 4-kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  139.7   0.0   3.1e-44   1.4e-40       2     249 ..    3777    4044 ..    3776    4045 .. 0.91

  Alignments for each domain:
  == domain 1  score: 139.7 bits;  conditional E-value: 3.1e-44
                      EEEEEECSSCHHHHHHHHHHHHHHHHHHHHTTTTCCCT-------EEESSSSEEEEE--TTEEEHHHHHHHHHHHC............TTSTC CS
  PI3_PI4_kinase    2 sagiykvgddlrqdelivqvfklmdeelskennpkrrklalktysviplgrkcgiielvassetaaslldeklekk............gvppt 82  
                      + ++ k+g+dlr d+++  +f+ md  l ++    +r+l l+ty+v+pl++++giie+v+ +et++ l++++ + +            +    
      KOO24177.1 3777 YRFLAKGGEDLRMDQRVQILFGSMDRALHAHAPASKRDLGLRTYAVLPLSEHVGIIEWVPDTETLKGLISKEAKVHpmgrgpkgepcdE---- 3865
                      78999********************************************************************9999988887443331.... PP

                      HHHHH..................HHHHCHCHCCHHHHHCCHHHHHHTSSTTHHHHHHHHHSSSHHHHHHHHHHHHHHHHHHHHHHHHHT-TT- CS
  PI3_PI4_kinase   83 asves..................lrvaldkkklkkekklkfekrtalkpksgllqeFvkkspsaeewlearkqFvrslaklsvldyilgngDR 157 
                       + +                    +++ +++kl+++    f++  +++p + l +  +k+s s e +l++r +F+rsla l    +ilg+gDR
      KOO24177.1 3866 -MAQGfyltelyprikgdatdylGKLNVRREKLAAK----FTEIVEKVPADLLQRAVHKRSVSSEVYLAMRARFARSLATLTACMHILGIGDR 3953
                      .33335666677667766566666666666666644....99999999999****************************************** PP

                      -TTTEEEETTTSEEEESSTTTCCTCSHCSSSS-.SSSSSS-THHHHHHTSTTCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHCCSSC CS
  PI3_PI4_kinase  158 hldNilvdktsgklihIDfGlilpdewkllpfpqekvPfrltrelvlaidpskdeglfresceealealrrdqnlltrllkkavkdglilwe 249 
                      hldN+l+++ +g+++ IDfG+++++++ llp+p e++  rltr++   + p+    l++ ++e +lealr     l+rll+ ++++++++we
      KOO24177.1 3954 HLDNFLLHTPTGNVVGIDFGHAFGSATYLLPVP-ELMGVRLTRQITTFLRPLDTPVLLKGHMEVTLEALRGRRVDLMRLLEVFLSEPIVDWE 4044
                      *********************************.*********************************************************7 PP

>> NUC194  NUC194 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.8   0.0   2.5e-10   1.1e-06     116     317 ..    1606    1851 ..    1597    1857 .. 0.75
   2 !   17.6   0.1   3.2e-07    0.0014     340     382 ..    1926    1970 ..    1880    1972 .. 0.82

  Alignments for each domain:
  == domain 1  score: 27.8 bits;  conditional E-value: 2.5e-10
      NUC194  116 tklvelrRqlhCaaYnaliaiisctqtelkfYnaflFkeneekkqfilenliDlkkkYefeieleeplkrkkklvsiRkeareaaeveaeesqsksy 212 
                  ++++ lrR l  aaY a +  + +tq+e+   +  +Fk+    +  ++e  +Dlk++Y+++        +   l++++   re a+ +  + + +  
  KOO24177.1 1606 AVAQTLRRALIAAAYAAFVETVVQTQKESSAIEKTIFKN----GLNVWELAVDLKRTYKLTAGTAFETTTDSALLTLQG--REPATRQDGA-RGAGA 1695
                  567899*******************************99....999***************999999999999999998..6555555555.45556 PP

      NUC194  213 kylssqyladssLse...disqydfsssveqsfssssssensassdsqseekatsv.....................................elem 269 
                  +yl+sq l  ssLs+   d++ yd   +  + ++ +s s+++ ++ sq + +a +v                                       e 
  KOO24177.1 1696 AYLPSQALLGSSLSQaahDLGVYDPDPAP-AGVPAASVSPRTVTQASQPASQAGEVklettsdlglddddsdgrrrkggggelsgsggvvlvqGYEL 1791
                  69************855577777776655.6666666666666666666666666644555666777777777777777778888888888777788 PP

      NUC194  270 delnqhEcmaslvallkhlqenkitpkvekde............vsselPeWmknLlkkl 317 
                  del  h  m +++  +  l+       ++ ++            +   +P+Wm++L  ++
  KOO24177.1 1792 DELSRHPLMGTMLRAISELKLRGLDRPASVGTlcsercpcgagqQGPMMPAWMHVLFTQM 1851
                  888888888888777777776666555555555666666666666667777777776655 PP

  == domain 2  score: 17.6 bits;  conditional E-value: 3.2e-07
      NUC194  340 vFkPYAkfwLtpllqlivsenegee..glnyfvvdilvlllsWad 382 
                   F+++A+ w +pllq++++  + +    +ny+  d++vl+ +W+ 
  KOO24177.1 1926 SFEKHARLWARPLLQVVLDSLKDSAnaTFNYLARDLVVLVAEWQR 1970
                  59****************8877655468***************85 PP

>> R3H  R3H domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.1   0.3   6.1e-14   2.7e-10       5      60 .]    2271    2329 ..    2268    2329 .. 0.90

  Alignments for each domain:
  == domain 1  score: 40.1 bits;  conditional E-value: 6.1e-14
                  HHHHHHHHHHH-S.--EEE-----SHHHHHHHHHHHHSSEEEEEE..--SS-SEEEEEE CS
         R3H    5 rvekklaefvkdt.grslefppmssyeRriiHelaeaygleseSv..GeepkRrvvvtk 60  
                  r+  ++++fv d+ +rs+ + ++++yeR++ H++ae+ gl seS   G++ +R ++++k
  KOO24177.1 2271 RLRVRIQDFVADAsQRSHALHSLNAYERLLAHRIAEELGLVSESAshGDGQERFITLYK 2329
                  677799****996479***********************99988877**********97 PP

>> FAT  FAT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.0         1   4.5e+03     276     342 ..    2724    2795 ..    2715    2795 .. 0.68
   2 !   33.4   0.0   6.1e-12   2.7e-08      38     204 ..    3088    3300 ..    3079    3356 .. 0.82

  Alignments for each domain:
  == domain 1  score: -3.5 bits;  conditional E-value: 1
                  HCCHHCTCCCHS.TTCCCCHHHHHCCHHHHHHSSSS.......S-TCC.HHHHCCT..CCHHHHTTTSSTTTCHH CS
         FAT  276 saateidpswyk.awhtwalfnfevvskeeeqkeeee......pedlq.eyvvpavkgflksislssenslqdtl 342 
                  +a +++dp ++k ++ ++     +++s+ ++     e       + l  ++  pa+ g l+ ++ls+++ lq+++
  KOO24177.1 2724 QALVHHDPLVAKlTFTQLYTTVRQQFSADSKAI---EglhrgvTSLLAsRHGGPAFVGCLHELALSEQHELQWLP 2795
                  556666666666666666666666666665542...123355544555599*********************986 PP

  == domain 2  score: 33.4 bits;  conditional E-value: 6.1e-12
                  CCCHH...--CCHCHHCCCHCCCCCCCCCTS---SCCCCCHHHHHCCCCCHHHCHHCCHHCSS-............---TTTTTTT----TTS-TT. CS
         FAT   38 lalhr...nqfdeakeliekarqlldtelsalvgesynraygvlvrvQmlaEleeiiqykqkls............sseklksllktWrkRlpgcq. 118 
                  l l r   ++++++++l  ++   +++ ++ l  +  + ++  l+ +Q l+E  e+ ++ ++ s            +s + + ll+ W++Rlp++  
  KOO24177.1 3088 LLLDRfavDDLNAIRALLPRCAHAFVRRWATLHPLAEQARLAELLPLQLLTEAAEVTSLLEEAStlsedpisgavgQSAEFTNLLRAWTQRLPSVTh 3184
                  55555666888999999999*****************************************999*****************************9999 PP

                  TGCCCTTTCCCCTCCCHCCCHC...........................HCCS-STTCCC...CCCCCHCHHHHCCSTTHHCCCCCHCTT.....TT CS
         FAT  119 dnvevwqdiltvRslvlspied...........................llkgvkaemwl...kfanlarksgrlslAekaLkelleedpeewlpra 185 
                  +n +vw+d++  Rs +l +  +                             ++ + +m +     a   r++g+++ Ae+ ++e         l++ 
  KOO24177.1 3185 HNTSVWDDLICARSRLLATLHQatqerlksfqsgrtfvdgpqqatllkaFERERNRAMLTlyeAAAAATRDQGNFGAAESYIRESGNLRRTLGLTKD 3281
                  *****************7777778889********************9733333444444566788889*************999777776666688 PP

                  .TSSCCCHHHHHHHCCHHH CS
         FAT  186 ppevvyaylKylwssgeqk 204 
                   p    +  ++++++++ +
  KOO24177.1 3282 DPSFACSLYRLMLQREQAR 3300
                  8888888888888888853 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (4078 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       674  (0.0375927); expected 358.6 (0.02)
Passed bias filter:                      467  (0.0260472); expected 358.6 (0.02)
Passed Vit filter:                        58  (0.00323498); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 1.69u 0.36s 00:00:02.04 Elapsed: 00:00:00.54
# Mc/sec: 22692.02
//
Query:       KOO24178.1  [L=813]
Description: aldo keto reductase, partial [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    8.8e-17   61.2   0.0    1.4e-16   60.6   0.0    1.2  1  Aldo_ket_red   Aldo/keto reductase family
    4.2e-08   33.3   0.0      8e-08   32.3   0.0    1.4  1  Abhydrolase_2  Phospholipase/Carboxylesterase
     0.0012   18.1   0.0        1.6    7.9   0.0    2.6  2  Hydrolase_4    Serine aminopeptidase, S33


Domain annotation for each model (and alignments):
>> Aldo_ket_red  Aldo/keto reductase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.6   0.0   2.3e-20   1.4e-16     133     292 ..     269     442 ..     261     444 .. 0.85

  Alignments for each domain:
  == domain 1  score: 60.6 bits;  conditional E-value: 2.3e-20
                   EEEEEEES--HHHHHHHHHTTT--EEEEE-B-BTT-HHHHTTHHHHHHHTT-EEEEBSTTGGGTTGTTTSS---SSSCCC-------.......... CS
  Aldo_ket_red 133 iraiGvSnfsveqlekakkkkkvkivavqveynllreleeegllelckkkgvpliaysplggGlltgkyqseedkedkeprkdlkrd.......... 219
                   + ++Gv  +s ++le++   ++v++++vq e nll  + +e  + +c++ g +++ay+pl gGll+ +y  ++++ ++  ++++ +           
    KOO24178.1 269 VWHYGVEDYSPAMLEQI--ASVVPVATVQQETNLL-VRPAEAARAFCAARGCRFVAYGPLLGGLLSDRYLGQPPPIPDADHSKQIDYlasirawgdw 362
                   669**************..****************.999999999**************************99999888888877779******666 PP

                   TS-HHHHHHHHHHHHHHHH..TT--HHHHHHHHHTTSTT-SEEEE--S.....SHHHHHHHHGGGG----HHHHHHHHHH CS
  Aldo_ket_red 220 ertsknldaaeelselake..hgvslaqlalryalsqpavgivipgas.....nieqlednldalelklseeevaeldel 292
                   er+++ l +++ + +   +   g  +a +al+y+l+ p v  +i+g++      +++ +d+l+al+l+l+++e a++d++
    KOO24178.1 363 ERFQGLLRTLRSVGDAHVDarGGAPIAVVALAYVLQLPYVLAAIVGVRlggvpGADHRRDSLRALALELTAQEKAAIDAA 442
                   555555555555544333332677*************999999999862222269**********************986 PP

>> Abhydrolase_2  Phospholipase/Carboxylesterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.3   0.0   1.3e-11     8e-08       4     200 ..     563     778 ..     560     789 .. 0.76

  Alignments for each domain:
  == domain 1  score: 32.3 bits;  conditional E-value: 1.3e-11
                    EEEE--SS---EEEEEE--TT--S.........HHHHHHHH.TT.--TTEEEEEE---E..EE-GGGTT-EEE-SS-B--...SSTTS.....-B- CS
  Abhydrolase_2   4 aevvspkdkaqavviflHGlGdsg.........hawaeaaktea.alpnikfifphgpe..lpvtlnggmrmpaWfdlvg...lspek.....ked 79 
                    + +v+p   ++a+v+ +HG  d++          + ae  + e  +  ++ f+f+++p+  +  + +   r  aW d ++    ++ k     + d
     KOO24178.1 563 PHIVEPTAVHRATVVVMHGFTDNAknyaetllpMLSAELGSSEQpPDAHVRFVFLQAPQrrISCYGEPRQRHAAWHDYFTdhgGEEGKpeleeELD 658
                    689*********************66655444433333333333145799********9534445555667899*987641113333333122335 PP

                    HHHHHHHHHHHHHHHHHHHHTT.--GGGEEEEEETHHHHHHHHHHHT-SS--SEEEEES---TTGGGTTTTS-GGGGG-EEEEEEETT-SSS-HHH CS
  Abhydrolase_2  80 eagikksaekleelidaelkkg.ipssriiigGFSqGaalalylaltlpkklggivafsgalplsqklessatavtkklpilqiHgeeDpvvplal 174
                     a  + + ++++ ++d+e +      sr ++ G SqG   a+ +alt+++ lgg +   g l + +  + ++ + +  l i+   g  D+v+   l
     KOO24178.1 659 TAHLEWTRRQVHRVLDVEAARLsGHTSRLVLLGQSQGSCCAIDAALTYKECLGGLFCSIGQLYSVTPAP-APGREA--LRIVTFNGAADQVIGAGL 751
                    566677899*********99986789******************************9999999988888.355555..99**************** PP

                    HHHHHHHHHTTS-.GEEEEEETT--SS CS
  Abhydrolase_2 175 gkaakevlkkllk.kvelksyeglaHs 200
                    + +++  l +l   ++ +++ + l H+
     KOO24178.1 752 ALRSYARLLELGFrQMRMHVQPLLDHR 778
                    999999999887767777776666665 PP

>> Hydrolase_4  Serine aminopeptidase, S33
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.4   0.0   0.00038       2.3       3      23 ..     572     592 ..     570     600 .. 0.86
   2 !    7.9   0.0   0.00027       1.6      67     107 ..     676     716 ..     644     739 .. 0.84

  Alignments for each domain:
  == domain 1  score: 7.4 bits;  conditional E-value: 0.00038
  Hydrolase_4   3 pkavvvlvHGlaehsgryael 23 
                  ++a+vv++HG+++ ++ yae+
   KOO24178.1 572 HRATVVVMHGFTDNAKNYAET 592
                  79****************994 PP

  == domain 2  score: 7.9 bits;  conditional E-value: 0.00027
  Hydrolase_4  67 ekvkeehpelplfllGhSmGGliallyllrypdkvaglils 107
                  e+++   ++++l+llG+S G+  a+ ++l+y++ + gl +s
   KOO24178.1 676 EAARLSGHTSRLVLLGQSQGSCCAIDAALTYKECLGGLFCS 716
                  56666777889*********************988888766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (813 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       498  (0.0277762); expected 358.6 (0.02)
Passed bias filter:                      366  (0.0204139); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.61u 0.29s 00:00:00.89 Elapsed: 00:00:00.44
# Mc/sec: 5561.38
//
Query:       KOO24179.1  [L=193]
Description: serine racemase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.2e-34  117.8   1.6    6.9e-34  117.6   1.6    1.0  1  PALP      Pyridoxal-phosphate dependent enzyme


Domain annotation for each model (and alignments):
>> PALP  Pyridoxal-phosphate dependent enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  117.6   1.6   3.9e-38   6.9e-34     127     294 .]       2     177 ..       1     177 [. 0.95

  Alignments for each domain:
  == domain 1  score: 117.6 bits;  conditional E-value: 3.9e-38
                 TCEE--TTTSHHHHHHHHTHHHHHHHHTT.TTEEEEEEE-SSSHHHHHHHHHHHHHSTT-EEEEEEECTTCGGTTCCS..S.SS..B.....SSS.CCS CS
        PALP 127 gaylvsqfdnptviegygtiglEileqlg.gkpdavvvpvGgGgliaGiaaglkerrpdvrvigvepegsdalarslragrrvtvpvs....dtiadgl 220
                 ga++v+++d+ +v +g+gtiglE++eqlg +++dav+vpv+gGgli+Gia ++k+ rp+vrvi+vep+g +    ++++ r+++  ++    dtiad++
  KOO24179.1   2 GATFVHPYDDALVLAGQGTIGLELHEQLGrHELDAVLVPVSGGGLIGGIAVAIKALRPSVRVIAVEPQGKELRLCFAQRQRVLDAATAnapiDTIADAI 100
                 689*****************************************************************9999999998888888888899********* PP

                 TCSCGTTCCHHHHSEEEE.EEEEEEHHHHHHHHHHHHHHHSB-B-HHHHHHHHHHHHHHHHCCTTC..EEEEEEE-B CS
        PALP 221 avgspselafelldrlvd.eivtvsdeealeamrllarregivvepssaaalaalklreagelkeg..drvvviltg 294
                 ++++ ++  ++ + +l+d ++ +vs++++ eamr    +++ vvep++a  laal + e g+l+++  ++v ++++g
  KOO24179.1 101 RTKAFGPIPWASASDLLDpTVLSVSNAQIGEAMRVAFVEMKQVVEPAGALTLAALLAPEFGALRAQglKHVAAVVCG 177
                 ******************999**********************************7778888888778888888887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (193 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       364  (0.0203023); expected 358.6 (0.02)
Passed bias filter:                      302  (0.0168442); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.26s 00:00:00.65 Elapsed: 00:00:00.39
# Mc/sec: 1467.94
//
Query:       KOO24180.1  [L=246]
Description: ankyrin repeat family protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.8e-11   43.0   0.0    1.3e-10   41.6   0.0    1.8  2  Ank_4     Ankyrin repeats (many copies)
    3.6e-10   39.9   0.1    6.9e-10   39.0   0.1    1.5  1  Ank_5     Ankyrin repeats (many copies)
    1.1e-09   38.2   0.0    1.7e-09   37.7   0.0    1.3  1  PX        PX domain
    9.5e-09   35.7   0.0    1.6e-08   35.0   0.0    1.3  1  Ank_2     Ankyrin repeats (3 copies)
    4.4e-08   33.2   0.2    3.5e-07   30.4   0.2    2.3  2  Ank       Ankyrin repeat
    1.7e-06   27.9   0.1    3.6e-05   23.8   0.0    2.5  2  Ank_3     Ankyrin repeat


Domain annotation for each model (and alignments):
>> Ank_4  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.6   0.0   4.3e-14   1.3e-10       3      55 .]     158     209 ..     156     209 .. 0.92
   2 !    6.9   0.0    0.0033        10      11      42 ..     199     229 ..     199     237 .. 0.90

  Alignments for each domain:
  == domain 1  score: 41.6 bits;  conditional E-value: 4.3e-14
       Ank_4   3 taLhyaaisgrlelvrlLlekgadinaqdnrsGetalhiAakrgnveilklLl 55 
                 +aL    ++g+  l++ L+e++ad+ ++ +r+G+t+lh+A+++++ +++klLl
  KOO24180.1 158 EALREGLKAGDDALCKELIESKADPLYR-DRQGNTPLHMACLFNRTDVAKLLL 209
                 5666667899999***************.***********************8 PP

  == domain 2  score: 6.9 bits;  conditional E-value: 0.0033
       Ank_4  11 sgrlelvrlLlekgadinaqdnrsGetalhiA 42 
                 ++r+++++lLl  gad  a  n+ Ge +  +A
  KOO24180.1 199 FNRTDVAKLLLMAGADMTAK-NAAGELPERMA 229
                 589********99***9998.****9998877 PP

>> Ank_5  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.0   0.1   2.3e-13   6.9e-10       5      52 ..     179     225 ..     175     229 .. 0.92

  Alignments for each domain:
  == domain 1  score: 39.0 bits;  conditional E-value: 2.3e-13
       Ank_5   5 gpadvnrldgggntpLhvAakygaadvvrlLlargadlnltdsrGlta 52 
                   ad+ ++d+ gntpLh+A+  ++ dv++lLl+ gad +++++ G+++
  KOO24180.1 179 K-ADPLYRDRQGNTPLHMACLFNRTDVAKLLLMAGADMTAKNAAGELP 225
                 4.89***************************************99887 PP

>> PX  PX domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.7   0.0   5.7e-13   1.7e-09      16     111 ..      16     104 ..       2     106 .. 0.82

  Alignments for each domain:
  == domain 1  score: 37.7 bits;  conditional E-value: 5.7e-13
                 TSSEEEEEEEEEETTSSSEEEEEEEHHHHHHHHHHHHHHHTTSTSTSSSTSGSSSSSCTTSHHHHHHHHHHHHHHHHHHHTSCHHHHSHHHHHHHH CS
          PX  16 skkhsyylyevelktgakewtvkRrYsdFeeLhskLlrkfprvkiPplPkkvlfgsvrkkdeefiekrrkgLeeyLqrllnhpelrnsevlteFLe 111
                    h+ y+++ ++++  +++tv++r+s F+eLh+ L +k  ++       k++f       e++ ++r ++L+eyL+++++ +   +  +l +FL+
  KOO24180.1  16 VTGHTEYIIKSSVGD--QQFTVQHRFSNFVELHDALASKIAKLPATFPVAKNMFNG-----EAVKRERVEKLQEYLRNVVRLSGEKPPIALLKFLK 104
                 567888888888887..5**********************9888877777887776.....88889999***********9988877777777775 PP

>> Ank_2  Ankyrin repeats (3 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.0   0.0   5.2e-12   1.6e-08      35      83 .]     165     219 ..     149     219 .. 0.86

  Alignments for each domain:
  == domain 1  score: 35.0 bits;  conditional E-value: 5.2e-12
       Ank_2  35 kngnleivklLleh......adndgrtpLhyAarsghleivklLlekgadinlkd 83 
                 k+g+  ++k L+e        d++g+tpLh+A+ +++++++klLl  gad+++k+
  KOO24180.1 165 KAGDDALCKELIESkadplyRDRQGNTPLHMACLFNRTDVAKLLLMAGADMTAKN 219
                 56776779****96656665669**********************99****9986 PP

>> Ank  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.1   0.0      0.52   1.6e+03      17      31 ..     171     186 ..     165     187 .. 0.79
   2 !   30.4   0.2   1.2e-10   3.5e-07       2      31 ..     189     219 ..     188     220 .. 0.94

  Alignments for each domain:
  == domain 1  score: -0.1 bits;  conditional E-value: 0.52
                 HHHHHH.TTTSTTCBT CS
         Ank  17 iiklLL.hGAnlnald 31 
                  +k+L+ + A++  +d
  KOO24180.1 171 LCKELIeSKADPLYRD 186
                 6899**7679998776 PP

  == domain 2  score: 30.4 bits;  conditional E-value: 1.2e-10
                 SBBHHHHHHHHTTHHHHHHHH.TTTSTTCBT CS
         Ank   2 GnTPLHlAatngkkriiklLL.hGAnlnald 31 
                 GnTPLH+A+ ++ ++++klLL  GA+ +a++
  KOO24180.1 189 GNTPLHMACLFNRTDVAKLLLmAGADMTAKN 219
                 9********999999******99******98 PP

>> Ank_3  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.2   0.0      0.28   8.4e+02      11      29 ..     165     182 ..     157     183 .. 0.76
   2 !   23.8   0.0   1.2e-08   3.6e-05       2      28 ..     189     214 ..     188     215 .. 0.95

  Alignments for each domain:
  == domain 1  score: 1.2 bits;  conditional E-value: 0.28
       Ank_3  11 rsgnleivkfLlenkgadv 29 
                 ++g+ +++k L+e   ad+
  KOO24180.1 165 KAGDDALCKELIE-SKADP 182
                 5677789******.78886 PP

  == domain 2  score: 23.8 bits;  conditional E-value: 1.2e-08
       Ank_3   2 GetpLhlAarsgnleivkfLlenkgad 28 
                 G+tpLh+A+++++++++k+Ll   gad
  KOO24180.1 189 GNTPLHMACLFNRTDVAKLLLM-AGAD 214
                 9********************9.8987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (246 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       408  (0.0227564); expected 358.6 (0.02)
Passed bias filter:                      400  (0.0223102); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.39u 0.25s 00:00:00.64 Elapsed: 00:00:00.37
# Mc/sec: 1968.16
//
Query:       KOO24181.1  [L=475]
Description: calmodulin 2 (phosphorylase delta) isoform cra_a [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    8.7e-17   59.3   7.8    2.2e-05   23.7   0.3    4.8  4  EF-hand_1     EF hand
    2.1e-15   56.9   2.7    1.2e-07   32.1   0.2    2.5  2  EF-hand_7     EF-hand domain pair
      2e-14   52.2   9.0    0.00079   19.2   0.0    4.8  4  EF-hand_6     EF-hand domain
    1.7e-08   33.6   7.8     0.0009   18.6   0.3    4.4  4  EF-hand_5     EF hand
    2.5e-08   33.6   5.7    7.4e-07   28.9   0.1    3.6  3  EF-hand_8     EF-hand domain pair
     0.0002   21.6   0.0       0.84   10.0   0.0    2.5  2  SPARC_Ca_bdg  Secreted protein acidic and rich in cysteine Ca
     0.0042   17.0   0.5      0.018   15.0   0.1    2.2  2  EF-hand_4     Cytoskeletal-regulatory complex EF hand
     0.0049   16.5   0.2      0.063   13.0   0.0    2.9  3  S_100         S-100/ICaBP type calcium binding domain
  ------ inclusion threshold ------
      0.046   14.1   0.4        4.8    7.6   0.0    2.7  3  EF-hand_9     EF-hand domain


Domain annotation for each model (and alignments):
>> EF-hand_1  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.1   0.0   1.5e-07   0.00031       1      28 [.     241     268 ..     241     269 .. 0.94
   2 !   23.7   0.3   1.1e-08   2.2e-05       2      27 ..     279     304 ..     278     306 .. 0.92
   3 !   14.4   0.0     1e-05      0.02       4      28 ..     389     413 ..     387     414 .. 0.92
   4 ?    2.3   0.5     0.077   1.5e+02      16      27 ..     438     449 ..     426     451 .. 0.87

  Alignments for each domain:
  == domain 1  score: 20.1 bits;  conditional E-value: 1.5e-07
                 HHHHHHHHHTTTSSSEEEHHHHHHHHHH CS
   EF-hand_1   1 elkeiFrefDkDgdGkIdfeEfkellkk 28 
                 e++++ r++D+D++G  d+ E+k++l++
  KOO24181.1 241 EIRRAYRLIDQDNSGECDRGELKHMLNA 268
                 799**********************987 PP

  == domain 2  score: 23.7 bits;  conditional E-value: 1.1e-08
                 HHHHHHHHTTTSSSEEEHHHHHHHHH CS
   EF-hand_1   2 lkeiFrefDkDgdGkIdfeEfkellk 27 
                 ++++++++D DgdG+I+f Ef +l++
  KOO24181.1 279 MDKLIDLADYDGDGQINFAEFARLVT 304
                 6899******************9987 PP

  == domain 3  score: 14.4 bits;  conditional E-value: 1e-05
                 HHHHHHTTTSSSEEEHHHHHHHHHH CS
   EF-hand_1   4 eiFrefDkDgdGkIdfeEfkellkk 28 
                 e+F+ +D Dg+G + + E++++l+ 
  KOO24181.1 389 EAFDTIDADGSGLLRRAELRRFLTG 413
                 89*******************9985 PP

  == domain 4  score: 2.3 bits;  conditional E-value: 0.077
                 EEEHHHHHHHHH CS
   EF-hand_1  16 kIdfeEfkellk 27 
                 +++++Ef++l++
  KOO24181.1 438 TLSKDEFIKLMS 449
                 6899*****997 PP

>> EF-hand_7  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.1   0.2     6e-11   1.2e-07       3      70 ..     241     303 ..     239     304 .. 0.89
   2 !   24.8   0.3   1.1e-08   2.3e-05       6      71 .]     389     449 ..     384     449 .. 0.89

  Alignments for each domain:
  == domain 1  score: 32.1 bits;  conditional E-value: 6e-11
   EF-hand_7   3 klkeaFkelDtdgdgyldkeellrllrkifqgagegsklsdeelellfkefDtdkdGvisfdEFlkly 70 
                 ++++a++++D+d++g  d+ el+++l ++f     +++  ++ +++l++  D d+dG+i+f EF +l+
  KOO24181.1 241 EIRRAYRLIDQDNSGECDRGELKHMLNAMF---NLAVP--EKVMDKLIDLADYDGDGQINFAEFARLV 303
                 6899***********************976...55555..566999******************9875 PP

  == domain 2  score: 24.8 bits;  conditional E-value: 1.1e-08
   EF-hand_7   6 eaFkelDtdgdgyldkeellrllrkifqgagegsklsdeelellfkefDtdkd.GvisfdEFlklyr 71 
                 eaF+ +D dg+g l+++el+r+l+      g  + l+d  +  l++  D d+d  ++s dEF kl++
  KOO24181.1 389 EAFDTIDADGSGLLRRAELRRFLT------GMSKMLPDRLISGLIDFCDNDGDaKTLSKDEFIKLMS 449
                 79**********************......777777777788899998*****78*********995 PP

>> EF-hand_6  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.2   0.0   3.9e-07   0.00079       1      27 [.     241     267 ..     241     271 .. 0.94
   2 !   12.7   0.3   4.6e-05     0.092       5      27 ..     282     304 ..     278     307 .. 0.83
   3 !   16.6   0.0   2.6e-06    0.0051       4      27 ..     389     412 ..     387     416 .. 0.94
   4 !    5.5   0.3    0.0095        19      10      27 ..     431     449 ..     426     456 .. 0.79

  Alignments for each domain:
  == domain 1  score: 19.2 bits;  conditional E-value: 3.9e-07
   EF-hand_6   1 elreaFklfDkdgdGkidaeElrkalr 27 
                 e+r+a++l+D+d++G+ d+ El+++l+
  KOO24181.1 241 EIRRAYRLIDQDNSGECDRGELKHMLN 267
                 699**********************98 PP

  == domain 2  score: 12.7 bits;  conditional E-value: 4.6e-05
   EF-hand_6   5 aFklfDkdgdGkidaeElrkalr 27 
                 + +l D+dgdG+i+++E+ ++ +
  KOO24181.1 282 LIDLADYDGDGQINFAEFARLVT 304
                 56789*************98765 PP

  == domain 3  score: 16.6 bits;  conditional E-value: 2.6e-06
   EF-hand_6   4 eaFklfDkdgdGkidaeElrkalr 27 
                 eaF+ +D dg+G + ++Elr++l+
  KOO24181.1 389 EAFDTIDADGSGLLRRAELRRFLT 412
                 89********************98 PP

  == domain 4  score: 5.5 bits;  conditional E-value: 0.0095
   EF-hand_6  10 DkdgdG.kidaeElrkalr 27 
                 D+dgd  +++++E++k+++
  KOO24181.1 431 DNDGDAkTLSKDEFIKLMS 449
                 5555559**********98 PP

>> EF-hand_5  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.8   0.0     0.022        44       6      24 ..     247     265 ..     247     266 .. 0.88
   2 !   18.6   0.3   4.5e-07    0.0009       2      25 .]     280     303 ..     279     303 .. 0.89
   3 !   11.8   0.1   6.5e-05      0.13       4      25 .]     390     411 ..     388     411 .. 0.91
   4 ?    0.4   0.1      0.27   5.3e+02      16      25 .]     439     448 ..     438     448 .. 0.86

  Alignments for each domain:
  == domain 1  score: 3.8 bits;  conditional E-value: 0.022
                 HHH-SS-SSCE-HHHHHHH CS
   EF-hand_5   6 qaiDlNgDGkIskeELktl 24 
                 + iD +++G  ++ ELk +
  KOO24181.1 247 RLIDQDNSGECDRGELKHM 265
                 579************9976 PP

  == domain 2  score: 18.6 bits;  conditional E-value: 4.5e-07
                 HHHHHHH-SS-SSCE-HHHHHHHH CS
   EF-hand_5   2 kdtFqaiDlNgDGkIskeELktlv 25 
                 +++ + +D +gDG+I++ E+ +lv
  KOO24181.1 280 DKLIDLADYDGDGQINFAEFARLV 303
                 567889**************9986 PP

  == domain 3  score: 11.8 bits;  conditional E-value: 6.5e-05
                 HHHHH-SS-SSCE-HHHHHHHH CS
   EF-hand_5   4 tFqaiDlNgDGkIskeELktlv 25 
                 +F+ iD++g+G + + EL++++
  KOO24181.1 390 AFDTIDADGSGLLRRAELRRFL 411
                 5******************985 PP

  == domain 4  score: 0.4 bits;  conditional E-value: 0.27
                 E-HHHHHHHH CS
   EF-hand_5  16 IskeELktlv 25 
                 +sk+E+ +l+
  KOO24181.1 439 LSKDEFIKLM 448
                 8*****9986 PP

>> EF-hand_8  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.9   0.1   3.7e-10   7.4e-07       3      52 ..     255     303 ..     253     305 .. 0.93
   2 ?    4.3   0.0     0.018        36      32      50 ..     391     409 ..     388     413 .. 0.83
   3 ?    3.0   0.1     0.048        95       3      52 ..     400     448 ..     398     450 .. 0.71

  Alignments for each domain:
  == domain 1  score: 28.9 bits;  conditional E-value: 3.7e-10
   EF-hand_8   3 gkItreelrril.rilglkkglseeevdilfrefDtdgdGkisfeEFcvll 52 
                 g+ +r el+++l +++ l+  + e+ +d l++++D dgdG i+f EF  l+
  KOO24181.1 255 GECDRGELKHMLnAMFNLA--VPEKVMDKLIDLADYDGDGQINFAEFARLV 303
                 56699*******9999***..**************************9886 PP

  == domain 2  score: 4.3 bits;  conditional E-value: 0.018
   EF-hand_8  32 frefDtdgdGkisfeEFcv 50 
                 f+++D dg+G +   E   
  KOO24181.1 391 FDTIDADGSGLLRRAELRR 409
                 99********998888765 PP

  == domain 3  score: 3.0 bits;  conditional E-value: 0.048
   EF-hand_8   3 gkItreelrrilrilglkkglseee.vdilfrefDtdgdGk.isfeEFcvll 52 
                 g + r+elrr+l+  g+ k + ++  +  l++  D dgd k +s++EF+ l+
  KOO24181.1 400 GLLRRAELRRFLT--GMSK-MLPDRlISGLIDFCDNDGDAKtLSKDEFIKLM 448
                 5566788888776..5554.44444488888999999986449999999988 PP

>> SPARC_Ca_bdg  Secreted protein acidic and rich in cysteine Ca binding region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.0   0.0   0.00042      0.84      57     111 ..     243     300 ..     193     301 .. 0.86
   2 !    9.1   0.0   0.00079       1.6      42     111 ..     373     445 ..     332     446 .. 0.81

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.00042
  SPARC_Ca_bdg  57 awkFsklDtnsdkvlsksELaplrap...lvklehCikpflescDadkdkkislkEwc 111
                   +  +  +D+++ +  ++ EL+++ +    l   e+ ++++++ +D d d++i+ +E++
    KOO24181.1 243 RRAYRLIDQDNSGECDRGELKHMLNAmfnLAVPEKVMDKLIDLADYDGDGQINFAEFA 300
                   5567889*************9987651115667***********************97 PP

  == domain 2  score: 9.1 bits;  conditional E-value: 0.00079
  SPARC_Ca_bdg  42 kkeeeknlkeckepvawkFsklDtnsdkvlsksELaplraplvkl..ehCikpflescDadkd.kkislkEwc 111
                   +k+ +k  ++  ++    F+++D +  ++l ++EL+   + + k+  ++ i+ +++ cD d d k++s+ E++
    KOO24181.1 373 HKALKKVINARFSSYSEAFDTIDADGSGLLRRAELRRFLTGMSKMlpDRLISGLIDFCDNDGDaKTLSKDEFI 445
                   4555555555666666689*****************9999888776699************994468888886 PP

>> EF-hand_4  Cytoskeletal-regulatory complex EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.1     9e-06     0.018      33      66 ..     267     300 ..     235     319 .. 0.83
   2 ?   -1.7   0.0       1.4   2.8e+03      40      69 ..     418     448 ..     379     450 .. 0.67

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 9e-06
   EF-hand_4  33 pvlknskleedklekiwdladidedgkldfeefc 66 
                 + + n  ++e+ ++k+ dlad d dg+++f ef+
  KOO24181.1 267 NAMFNLAVPEKVMDKLIDLADYDGDGQINFAEFA 300
                 55678888999**********************7 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 1.4
   EF-hand_4  40 leedklekiwdladidedgk.ldfeefciam 69 
                 l++  ++ + d++d d d k l  +ef+  m
  KOO24181.1 418 LPDRLISGLIDFCDNDGDAKtLSKDEFIKLM 448
                 4444556677778888776437777776555 PP

>> S_100  S-100/ICaBP type calcium binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.0       1.4   2.7e+03      27      35 ..     259     267 ..     258     268 .. 0.83
   2 ?   -1.2   0.0      0.89   1.8e+03      25      35 ..     402     412 ..     398     413 .. 0.86
   3 !   13.0   0.0   3.2e-05     0.063      17      35 ..     431     449 ..     428     451 .. 0.89

  Alignments for each domain:
  == domain 1  score: -1.9 bits;  conditional E-value: 1.4
                 HHHHHHHHH CS
       S_100  27 KkELkeLle 35 
                 ++ELk +l+
  KOO24181.1 259 RGELKHMLN 267
                 689999997 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 0.89
                 EEHHHHHHHHH CS
       S_100  25 LsKkELkeLle 35 
                 L ++EL+++l+
  KOO24181.1 402 LRRAELRRFLT 412
                 7899***9997 PP

  == domain 3  score: 13.0 bits;  conditional E-value: 3.2e-05
                 TSSSSTTSEEHHHHHHHHH CS
       S_100  17 gkeGdkdtLsKkELkeLle 35 
                  ++Gd  tLsK+E+ +L+ 
  KOO24181.1 431 DNDGDAKTLSKDEFIKLMS 449
                 689**************96 PP

>> EF-hand_9  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.6   0.0    0.0024       4.8       3      61 ..     245     302 ..     243     305 .. 0.93
   2 ?   -3.7   0.0       8.1   1.6e+04      29      38 ..     324     333 ..     322     336 .. 0.74
   3 ?    3.9   0.0     0.034        68       4      64 ..     391     450 ..     388     452 .. 0.84

  Alignments for each domain:
  == domain 1  score: 7.6 bits;  conditional E-value: 0.0024
   EF-hand_9   3 vFevcDtqktGrVpvsrlidyLravtaqdpeeseLeelakelDPdgedasvdldtflrv 61 
                  +++ D +  G+    +l+ +L a+ + + +e  +++l  ++D dg  +++++  f r 
  KOO24181.1 245 AYRLIDQDNSGECDRGELKHMLNAMFNLAVPEKVMDKLIDLADYDGD-GQINFAEFARL 302
                 699***********************99***************9998.9****999886 PP

  == domain 2  score: -3.7 bits;  conditional E-value: 8.1
   EF-hand_9  29 aqdpeeseLe 38 
                 ++dp+e++Le
  KOO24181.1 324 TKDPKEVQLE 333
                 5689998876 PP

  == domain 3  score: 3.9 bits;  conditional E-value: 0.034
   EF-hand_9   4 FevcDtqktGrVpvsrlidyLravtaqdpeeseLeelakelDPdgedasvdldtflrvmre 64 
                 F+  D +  G  + ++l  +L  + + + ++  + +l    D dg  +++ +d f + m+ 
  KOO24181.1 391 FDTIDADGSGLLRRAELRRFLTGMSK-MLPDRLISGLIDFCDNDGDAKTLSKDEFIKLMSA 450
                 77778888888888888888888887.8888999999999*******************86 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (475 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       705  (0.0393218); expected 358.6 (0.02)
Passed bias filter:                      540  (0.0301188); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.51u 0.27s 00:00:00.78 Elapsed: 00:00:00.39
# Mc/sec: 3632.17
//
Query:       KOO24182.1  [L=957]
Description: hypothetical protein Ctob_000239 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    5.7e-07   29.1   0.0    2.4e-06   27.1   0.0    2.1  1  MBD              Methyl-CpG binding domain
    7.3e-05   22.9  11.6        0.6   10.4   0.0    4.9  4  AP2              AP2 domain
  ------ inclusion threshold ------
      0.035   13.9   0.0      0.087   12.6   0.0    1.6  1  T2SS-T3SS_pil_N  Pilus formation protein N terminal region


Domain annotation for each model (and alignments):
>> MBD  Methyl-CpG binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.1   0.0     4e-10   2.4e-06      13      58 ..     214     259 ..     209     322 .. 0.91

  Alignments for each domain:
  == domain 1  score: 27.1 bits;  conditional E-value: 4e-10
                 CT-EEEEEEEESSTTTCEEEEEEE-TTS-EE-SHHHHHHHHHHCT- CS
         MBD  13 kGWrreerqrksGssankvdvfYysPtGkkfsskkevaayLenakq 58 
                  GWr++  +r +G sa+++d +Y+  +G+kf+s ke+a  L+ + +
  KOO24182.1 214 AGWRVKQEVRMTGNSAGTTDLYYFDRNGRKFRSAKEIAIWLGLQPS 259
                 6*****999********************************99975 PP

>> AP2  AP2 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.3   0.2      0.14   8.4e+02      12      33 ..     658     681 ..     654     694 .. 0.67
   2 !   10.4   0.0    0.0001       0.6       2      42 ..     725     760 ..     724     765 .. 0.88
   3 !    6.5   0.2    0.0017       9.9       2      42 ..     811     846 ..     810     858 .. 0.80
   4 !    9.8   0.3   0.00015      0.92       2      44 ..     908     945 ..     907     948 .. 0.92

  Alignments for each domain:
  == domain 1  score: 0.3 bits;  conditional E-value: 0.14
         AP2  12 rgrWvAewsk..ngkrkkkrfsvg 33 
                  ++W A+w +  +g + +   svg
  KOO24182.1 658 ANKWQASWGGegGGGKGSSGNSVG 681
                 689****98876444555655555 PP

  == domain 2  score: 10.4 bits;  conditional E-value: 0.0001
         AP2   2 kikGVrydkkrgrWvAewskngkrkkkrfsvgkyGf.eeAkr 42 
                 ++kGV ++   gr+++  +kng    k  ++g++ + eeA++
  KOO24182.1 725 GFKGVIKNG--GRYAVTICKNG----KPRYLGTFATpEEAAL 760
                 678887777..**********9....999***********97 PP

  == domain 3  score: 6.5 bits;  conditional E-value: 0.0017
         AP2   2 kikGVrydkkrgrWvAewskngkrkkkrfsvgkyGf.eeAkr 42 
                 ++kGV++     ++++  skng    k+ ++g++ + eeA++
  KOO24182.1 811 GFKGVTKSG--FKYMTNVSKNG----KQRYLGTFATpEEAAL 846
                 566666665..57888888888....9*************97 PP

  == domain 4  score: 9.8 bits;  conditional E-value: 0.00015
         AP2   2 kikGVrydkkrgrWvAewskngkrkkkrfsvgkyGf.eeAkraA 44 
                 ++kGV++ k  g++ +  skng    +  ++g + + eeA++++
  KOO24182.1 908 GFKGVTKFK--GKYKTTVSKNG----THHYLGAFATpEEAALRY 945
                 799999999..9******9999....***************998 PP

>> T2SS-T3SS_pil_N  Pilus formation protein N terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   1.5e-05     0.087      40      64 ..     220     244 ..     216     250 .. 0.88

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 1.5e-05
  T2SS-T3SS_pil_N  40 revlltGksvGtTnlivwdaggrel 64 
                      +ev  tG+s+GtT+l+ +d++gr+ 
       KOO24182.1 220 QEVRMTGNSAGTTDLYYFDRNGRKF 244
                      68899*****************975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (957 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       923  (0.0514808); expected 358.6 (0.02)
Passed bias filter:                      467  (0.0260472); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.74u 0.29s 00:00:01.03 Elapsed: 00:00:00.45
# Mc/sec: 6393.31
//
Query:       KOO24183.1  [L=259]
Description: hypothetical protein Ctob_000238 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (259 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       329  (0.0183502); expected 358.6 (0.02)
Passed bias filter:                      282  (0.0157287); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.42u 0.25s 00:00:00.67 Elapsed: 00:00:00.41
# Mc/sec: 1899.86
//
Query:       KOO24184.1  [L=1645]
Description: p-type ATPase superfamily [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.7e-17   63.5   2.3    7.8e-14   51.6   0.0    2.7  2  E1-E2_ATPase     E1-E2 ATPase
    1.8e-11   44.7  13.5    1.9e-10   41.4   7.7    3.7  2  Hydrolase        haloacid dehalogenase-like hydrolase
  ------ inclusion threshold ------
      0.021   14.5   0.0       0.06   13.0   0.0    1.8  1  Cation_ATPase_N  Cation transporter/ATPase, N-terminus
       0.21   11.3   0.0       0.37   10.5   0.0    1.3  1  Hydrolase_3      haloacid dehalogenase-like hydrolase


Domain annotation for each model (and alignments):
>> E1-E2_ATPase  E1-E2 ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.6   0.0   1.7e-17   7.8e-14       8      91 ..     431     538 ..     428     556 .. 0.91
   2 !   10.4   0.9   7.6e-05      0.34      82     180 ..     572     671 ..     568     672 .. 0.81

  Alignments for each domain:
  == domain 1  score: 51.6 bits;  conditional E-value: 1.7e-17
                   EEE-TTS-EEEEGGG--TTSEEEEET..T-...B--SEEEEEEE-SEEE-TTTS---S-EE-...................G-TTEE-TT-EEEE-E CS
  E1-E2_ATPase   8 kvirdgteeeidakelvpGDivllka..gd...rvpaDgrivegsaevdesaLTGEslpvek...................ekgdmvfsGtvvvsge 80 
                   +++rdg ++ +++  l p Di+ l+   g    +vpaD++++ g a v+es LTGEs p  k                   ++ ++++sGt  ++ +
    KOO24184.1 431 HCYRDGAWVLVPSTSLLPSDIICLRRpaGAeplTVPADCVVLRGGAVVNESTLTGESIPQLKdpltvehkdkgdrldikstHRVHTLYSGTLLLQAT 527
                   678*********************9644545558**********************************************99*************** PP

                   EEEEEEE-TTT CS
  E1-E2_ATPase  81 akavVtatged 91 
                    kavV+  g d
    KOO24184.1 528 GKAVVVVEGAD 538
                   99999988766 PP

  == domain 2  score: 10.4 bits;  conditional E-value: 7.6e-05
                   EEEEEE-TTTSTTTTTSTTS--------HHHHHHHHHHHHHHHHHHHHHHHHHHS-STTTSSTT.HHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHH CS
  E1-E2_ATPase  82 kavVtatgedtelgkiarlveeakskktplqkkldklgkvlvpvvlliallvflialllgksla.eallralallvaaiPcaLplavplalalgarr 177
                   ++ V+at+ ++  g+++r++e +++k t  + +   l   l +++l+ a +v+   l  gk+++ e +l+ + +l++++P+ Lp+ + la+ +++++
    KOO24184.1 572 VCYVLATAFSSSQGELMRMIEFSTAKVTADKVETLGLLLLLLTFALASAGYVLKKGLEEGKKTQyELVLKCVLILTSVVPPELPMQAALAVNTALMA 668
                   5779999999999*******99987777766666666666777777777777777777777777888888*******************99999998 PP

                   HHH CS
  E1-E2_ATPase 178 lak 180
                   l+k
    KOO24184.1 669 LMK 671
                   877 PP

>> Hydrolase  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.4   7.7   4.3e-14   1.9e-10       2     210 .]     689    1119 ..     688    1119 .. 0.86
   2 ?   -3.3   0.3         2     9e+03      88     128 ..    1160    1205 ..    1135    1226 .. 0.60

  Alignments for each domain:
  == domain 1  score: 41.4 bits;  conditional E-value: 4.3e-14
                  SEEEEESBTTTBCHHHHHHHHHHHH...CHHHHHHHHHHHHCHHHHHHHHHHHHH..HHHHHHHHHETTTE..........HHHHTHHHHHHHH... CS
                  xxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxx..........xxxxxxxxxxxxx... RF
   Hydrolase    2 ktvvfDkdGTLttgepsvedvivsa...alalaaaletgsehpigkalvaaakar..sgaltgfatfigrg..........ayaigkpewltal... 80  
                  + ++fDk+GTLtt e  ++ ++  a   a++   a   +s +pi+   +a a+     g ++   +++g+                   w  +    
  KOO24184.1  689 THCLFDKTGTLTTDELTLRGLVSGAvsgAVSSEGAVSAVSARPIQSMSAASAEMTcvVGGCHALLQVEGQLmgdpielaaiN----AFGWSYDAata 781 
                  6799***********6666666666555888888888889999999999988888775555666666665566666644331....33332222334 PP

                  .....HCHHHHHHHHHHHHHHCHHHHHH..................................................................... CS
                  .....xxxxxxxxxxxxxxxxxxxxxxx..................................................................... RF
   Hydrolase   81 .....dippdlgaaigsaqsqgrtvall..................................................................... 103 
                       d  p l++a  +a+++  t+ +                                                                      
  KOO24184.1  782 tasaiDPLPALDMALKQAEGALATALVAakrsasggqggqavpgratstgppaaaaaalevqaatakvdeakaarergvarraaalhrgmtvrivhr 878 
                  455556668888888888888888888899999999999999999999999999999999999999999999999999999999999********** PP

                  ................................................................................................. CS
                  ................................................................................................. RF
   Hydrolase  104 ................................................................................................. 103 
                                                                                                                   
  KOO24184.1  879 hhfasslgrmsvvahvknlrtadgrsedavlclakgspeavgkllkpggeavggkpewyestytrlaeqglrvlalaykrcggeglaaaeaavyakk 975 
                  ************************************************************************************************* PP

                  .........................................TTHHHHHHHHHHTHHBHTTHHHHHHHHHHTTEEEEEEESSEHHHHHHHHHHTTGGG CS
                  .........................................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   Hydrolase  104 .........................................qaralavftiadplkvkpeaaeavasLkaagievvlltgdnpetaeraanqlGddy 159 
                                                             ++la +++ d+     +  ++v++L+ ag    l+tg n +   +aa+ +G   
  KOO24184.1  976 prswvesgltfggflafgcpvrkdsasviralresqhvtimLTDVLAPIAAGDK-----DPMDTVKRLRTAGH-DLLVTGANWTALVSAAEAAG--- 1063
                  ********************************9998888886689999999888.....6679**********.889*****************... PP

                  ESEEEEHHCES.STTTSHHHHHHHHHHHT....STGGGEEEEESSHHHHHHHHHTT CS
                  xxxxxxxxxxx.xxxxxxxxxxxxxxxxx....xxxxxxxxxxxxxxxxxxxxxxx RF
   Hydrolase  160 fdaviasdiet.vakpspegkvaaireLq....gkpeevamVGDgvnDaaalaaAg 210 
                  +d    +d ++ +a  spegk+ ++r L+     k++ ++m GDg nD+ al+ A+
  KOO24184.1 1064 IDMWPVADQVAvFARMSPEGKETVVRALNkilsKKGRATLMCGDGGNDVGALKTAD 1119
                  644444555557****************9999999999***************997 PP

  == domain 2  score: -3.3 bits;  conditional E-value: 2
                  HHHHHHHHHCHHHHHH.....TTHHHHHHHHHHTHHBHTTHHHHHH CS
                  xxxxxxxxxxxxxxxx.....xxxxxxxxxxxxxxxxxxxxxxxxx RF
   Hydrolase   88 aaigsaqsqgrtvall.....qaralavftiadplkvkpeaaeava 128 
                  aai + q+q r+v+ +      +   a++ + +p +v +e+a +va
  KOO24184.1 1160 AAIAKGQDQKRSVMAQkfqaeLKAKQAEIRARQPQYVQEELARLVA 1205
                  4444445555555554443332244555555555555555555554 PP

>> Cation_ATPase_N  Cation transporter/ATPase, N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.0   1.3e-05      0.06      19      68 ..     337     385 ..     332     386 .. 0.94

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 1.3e-05
  Cation_ATPase_N  19 nGLtqaeaaerlkkyGpNelkekkkkslwvkllkqftnplvilLlvaalv 68 
                       GL+ a++ + ++++G N + e + ++++ ++ +q+ +p+ ++ l + ++
       KOO24184.1 337 AGLAGAAVGRAQERFGANSF-EIPLPTWIDLYKEQLASPIAMFQLLCCVL 385
                      69******************.**********************9999887 PP

>> Hydrolase_3  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.0   8.3e-05      0.37     188     228 ..    1084    1124 ..    1081    1133 .. 0.93

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 8.3e-05
                   HHHHHHHHHHHCT--GGGEEEEESSGGGHHHHHHSSEEEEE CS
  Hydrolase_3  188 KgtalkklakelnisleeviafGDgeNDieMLeaaglgvAm 228 
                   K t +++l k l+ +   ++  GDg ND+  L+ a++gv +
   KOO24184.1 1084 KETVVRALNKILSKKGRATLMCGDGGNDVGALKTADVGVSL 1124
                   88999*********************************975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1645 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       925  (0.0515924); expected 358.6 (0.02)
Passed bias filter:                      522  (0.0291148); expected 358.6 (0.02)
Passed Vit filter:                        51  (0.00284455); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.97u 0.31s 00:00:01.28 Elapsed: 00:00:00.46
# Mc/sec: 10767.07
//
Query:       KOO24185.1  [L=313]
Description: protein transporter sec23 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.7e-16   58.8   0.0    7.9e-16   57.8   0.0    1.6  2  Sec23_helical  Sec23/Sec24 helical domain
      1e-06   29.4   0.0    1.6e-06   28.7   0.0    1.4  1  Sec23_BS       Sec23/Sec24 beta-sandwich domain
  ------ inclusion threshold ------
       0.11   12.4   0.0       0.56   10.1   0.0    2.0  1  Gelsolin       Gelsolin repeat


Domain annotation for each model (and alignments):
>> Sec23_helical  Sec23/Sec24 helical domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.7   0.0       1.8   1.1e+04      16      32 ..      29      45 ..      24      51 .. 0.59
   2 !   57.8   0.0   1.3e-19   7.9e-16       1      98 [.      81     176 ..      81     181 .. 0.93

  Alignments for each domain:
  == domain 1  score: -3.7 bits;  conditional E-value: 1.8
                   HTTTS-HHHHHHHHHHH CS
  Sec23_helical 16 kalesgladarealdts 32
                   ++ e+g  +a ++l+ s
     KOO24185.1 29 RSTEKGAPEASQFLQLS 45
                   55556666666666544 PP

  == domain 2  score: 57.8 bits;  conditional E-value: 1.3e-19
                    -HHHHHHHHHHHHHHHTT.TS-HHHHHHHHHHHHHHHHHHHHHH-------------GGGTTHHHHHHHHHTSTTTS--TT--HHHHHHHHHHHHH CS
  Sec23_helical   1 Dqeavtvllakqaidkal.esgladarealdtslvdllsayrkvgasgsspsqlqlpeslklLPlyilallKspafrggnsvpaDervfalsllls 95 
                    Dq+a+++l+++qa  +a    +  ++  ++d++l+++++a+  + ++  +ps++ lp +  +LP +i++l++spa r +n +p De++++++l+ +
     KOO24185.1  81 DQQAAAALMIRQAAGEAHdGATTPELLTSIDRRLIKVMRALCAFAKG--EPSSVALPPQAGMLPGLIFHLRRSPAVRTTNLSP-DETAYFRHLVGT 173
                    9****************94599999********************99..99**************************887777.*********999 PP

                    --H CS
  Sec23_helical  96 lpv 98 
                    l v
     KOO24185.1 174 LGV 176
                    887 PP

>> Sec23_BS  Sec23/Sec24 beta-sandwich domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.7   0.0   2.7e-10   1.6e-06      33      94 ..       3      65 ..       1      67 [. 0.91

  Alignments for each domain:
  == domain 1  score: 28.7 bits;  conditional E-value: 2.7e-10
                EESECSESEEEEEEEETT--EEEEEEE.SSBTCTTSEEEEEEEEEEEETTSEEEEEEEEEEEE CS
    Sec23_BS 33 eiGeggtsewklcsldpdstlavyfdi.deklksgkqayiQfatlYthssgerrlRVttvalp 94
                e G   t +w++++l p+ t a +++  +ek + + + ++Q+  +Y h++g rr+RV t+ lp
  KOO24185.1  3 EAGRARTFRWSVGALAPHYTTAATLKRsTEKGAPEASQFLQLSASYMHADGGRRVRVSTLRLP 65
                789999*******************985556888999**********************9886 PP

>> Gelsolin  Gelsolin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.0   9.4e-05      0.56       7      74 ..     198     287 ..     193     289 .. 0.72

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 9.4e-05
                 EBSSSGGGEETTSEEEEEESS........EEEEEEHTT.SHHHHHHHHHHHHHHHH.............HCTTTTTSEEEEEETTHHHHH CS
    Gelsolin   7 vvklsssslesgdcyLLdngf........tiflWiGke.ssqeeknfaadlaaeld.............seerfplpeliredqgkepar 74 
                 + +l+ s   +++++LLd++         +i++W+ +  s    ++ +a++  el+             +  rfp pe+  +dq ++ ar
  KOO24185.1 198 PLQLDPSAMLPERSLLLDTFTklilchgaHIAQWRRSAaSAKPGAQHGASSDPELEaivasgrkdlealAAARFPAPEVFECDQYGSKAR 287
                 55666667778999999999999999999******9997444444444444444444566666677788888888888888888887665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (313 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       281  (0.0156729); expected 358.6 (0.02)
Passed bias filter:                      246  (0.0137208); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.46u 0.24s 00:00:00.70 Elapsed: 00:00:00.41
# Mc/sec: 2291.80
//
Query:       KOO24186.1  [L=469]
Description: hypothetical protein Ctob_009444 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.038   12.8   0.0       0.06   12.2   0.0    1.3  1  BTV_NS2   Bluetongue virus non-structural protein NS2


Domain annotation for each model (and alignments):
>> BTV_NS2  Bluetongue virus non-structural protein NS2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   3.3e-06      0.06     297     342 ..     152     200 ..     143     225 .. 0.87

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 3.3e-06
                 XXXXXXXXX...XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
     BTV_NS2 297 asggfdrmi...vtkklkwqnvplycfdeslkryelqcvgacervafvs 342
                 a+g + rmi       l+w    +  +de + ry +q+ g+ erva+  
  KOO24186.1 152 AAGALVRMIglvARADLNWCTARVLSYDEKISRYHVQVDGTWERVALKP 200
                 6788888874413458*****************************9865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (469 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       773  (0.0431145); expected 358.6 (0.02)
Passed bias filter:                      322  (0.0179597); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.51u 0.25s 00:00:00.76 Elapsed: 00:00:00.39
# Mc/sec: 3604.97
//
Query:       KOO24187.1  [L=333]
Description: hypothetical protein Ctob_009441 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (333 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       390  (0.0217525); expected 358.6 (0.02)
Passed bias filter:                      350  (0.0195214); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.44u 0.27s 00:00:00.71 Elapsed: 00:00:00.43
# Mc/sec: 2352.40
//
Query:       KOO24188.1  [L=147]
Description: exostosin-like glycosyltransferase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.3e-09   35.7   0.0    7.5e-09   35.2   0.0    1.1  1  Exostosin  Exostosin family


Domain annotation for each model (and alignments):
>> Exostosin  Exostosin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.2   0.0   4.2e-13   7.5e-09     234     298 ..       4      73 ..       2      74 .. 0.90

  Alignments for each domain:
  == domain 1  score: 35.2 bits;  conditional E-value: 4.2e-13
   Exostosin 234 ssrFClvppGdsptsr.rlfdallagCIPVii.....sdqielPfedvldwrefsvfvpekdvpelksilr 298
                 +srFC vp+G+    + r + a++ gC+PV+      sd+  lP  ++l w +fs++vp +++p l  +l+
  KOO24188.1   4 TSRFCWVPRGQGQGDPtRHMVAIFHGCVPVFTlgprtSDD-ALPLDELLPWPRFSLRVPTDELPTLPDVLN 73 
                 79**********888778999***************6666.69999******************9988775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (147 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       158  (0.00881254); expected 358.6 (0.02)
Passed bias filter:                      139  (0.0077528); expected 358.6 (0.02)
Passed Vit filter:                        11  (0.000613531); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.24s 00:00:00.64 Elapsed: 00:00:00.43
# Mc/sec: 1037.30
//
Query:       KOO24189.1  [L=431]
Description: hypothetical protein Ctob_009443 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
  ------ inclusion threshold ------
      0.024   15.5   0.0      0.045   14.6   0.0    1.4  1  2OG-FeII_Oxy_3  2OG-Fe(II) oxygenase superfamily


Domain annotation for each model (and alignments):
>> 2OG-FeII_Oxy_3  2OG-Fe(II) oxygenase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.6   0.0   2.5e-06     0.045      25      95 ..     310     376 ..     295     377 .. 0.79

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 2.5e-06
                     .-.EEEEEEEEE....ET-B--EEE..........---TT-EEEEE-..B-TEEE--B.-SS-EEEEEEEE CS
  2OG-FeII_Oxy_3  25 sgqrrltvllyLnekeseeGGelelyekdkeavkikpkkgrlvlFesdellpHevlpvtkggeRlsltgwi 95 
                     +++ r+tv + +++++++ GG l+ +  +   ++i   +g++ + +sd +  H+v+++t+g  R+sl +++
      KOO24189.1 310 QDKARITVNVAVSSDAAHGGGRLVGV-YNGALHTILRDEGEATVHSSDLF--HAVTRMTSG-VRYSLILFF 376
                     45678999999987777777775542.2236788889**********999..******886.*****9998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (431 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       383  (0.021362); expected 358.6 (0.02)
Passed bias filter:                      314  (0.0175135); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.52u 0.23s 00:00:00.75 Elapsed: 00:00:00.42
# Mc/sec: 3067.49
//
Query:       KOO24190.1  [L=707]
Description: hypothetical protein Ctob_009442 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
          1    9.1  35.3          1    9.2   0.6    5.3  6  Phage_GP20  Phage minor structural protein GP20


Domain annotation for each model (and alignments):
>> Phage_GP20  Phage minor structural protein GP20
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.9   7.1   0.00013       2.4      21      98 ..     189     268 ..     179     288 .. 0.82
   2 ?   -2.6   0.4      0.24   4.3e+03      59      71 ..     307     319 ..     268     364 .. 0.59
   3 ?   -1.4   0.4      0.11   1.9e+03      58      80 ..     366     388 ..     315     419 .. 0.59
   4 ?    7.1   3.9   0.00025       4.5      49      91 ..     478     520 ..     469     527 .. 0.88
   5 ?    9.2   0.6   5.7e-05         1      43      83 ..     522     562 ..     520     581 .. 0.83
   6 ?    1.6   0.0     0.012   2.1e+02      17      47 ..     580     610 ..     563     623 .. 0.73

  Alignments for each domain:
  == domain 1  score: 7.9 bits;  conditional E-value: 0.00013
  Phage_GP20  21 deveeerdtlkeqlkdrdkqLedLkkkakdne.eLqkqieelqaknkkakaeyeakiadlkldnai.elaLkeakaknek 98 
                 +++ +e++ l  +++++ k++e+L++++   e  L+ +ie+l a+++ + +e ea   +   d  i + +Lk+a+a+ ++
  KOO24190.1 189 SDLRAENKALDADMQAKLKEIETLQDASRAMErRLKGEIETLSAEIESSRTELEATQVQCLRDVEIaRRELKAAEASAAE 268
                 67899*********************99888736*******************996555555554416789988887665 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 0.24
  Phage_GP20  59 eelqaknkkakae 71 
                 e  qa++++a + 
  KOO24190.1 307 ELTQAALEQAVDA 319
                 3333333333222 PP

  == domain 3  score: -1.4 bits;  conditional E-value: 0.11
  Phage_GP20  58 ieelqaknkkakaeyeakiadlk 80 
                 +    ++n++a a + a ++dl+
  KOO24190.1 366 VRRGAEANEEAAARHRAILEDLE 388
                 44444444444444444444332 PP

  == domain 4  score: 7.1 bits;  conditional E-value: 0.00025
  Phage_GP20  49 kdneeLqkqieelqaknkkakaeyeakiadlkldnaielaLke 91 
                 k   +L +  e+ q +n++a a+++a +++lk  +a+e++L  
  KOO24190.1 478 KALSDLRERYEQSQRQNADAAATHAAALTNLKQAAAMEKQLLH 520
                 667899999******************************9976 PP

  == domain 5  score: 9.2 bits;  conditional E-value: 5.7e-05
  Phage_GP20  43 dLkkkakdneeLqkqieelqaknkkakaeyeakiadlkldn 83 
                 ++  + + n++L +qi++l a+++ ++a++e+++ +++l+ 
  KOO24190.1 522 EMRRSEQRNDALGRQIDDLRAEMQSQSAQHESELLAQQLER 562
                 566778899*************************9999986 PP

  == domain 6  score: 1.6 bits;  conditional E-value: 0.012
  Phage_GP20  17 kakldeveeerdtlkeqlkdrdkqLedLkkk 47 
                 k + d+ +    +l+ ql+++ +++ +L++ 
  KOO24190.1 580 KHEGDTFKGRCMQLEMQLDEAHSTIRTLQER 610
                 5666667777777888888888888888765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (707 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2437  (0.135925); expected 358.6 (0.02)
Passed bias filter:                      435  (0.0242624); expected 358.6 (0.02)
Passed Vit filter:                       112  (0.00624686); expected 17.9 (0.001)
Passed Fwd filter:                        44  (0.00245412); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 1.73u 0.41s 00:00:02.14 Elapsed: 00:00:00.66
# Mc/sec: 3232.67
//
Query:       KOO24191.1  [L=419]
Description: conserved unknown protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
     0.0014   18.9   0.1     0.0028   18.0   0.1    1.4  1  MBT         mbt repeat
  ------ inclusion threshold ------
      0.011   16.2   0.2      0.022   15.2   0.2    1.5  1  Agenet      Agenet domain
       0.03   14.2   0.1      0.062   13.2   0.1    1.5  1  Tudor-knot  RNA binding activity-knot of a chromodomain


Domain annotation for each model (and alignments):
>> MBT  mbt repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.0   0.1   4.7e-07    0.0028       6      50 ..      76     120 ..      75     127 .. 0.92

  Alignments for each domain:
  == domain 1  score: 18.0 bits;  conditional E-value: 4.7e-07
         MBT   6 vdpknpslicvAtVvkvlgrrllvrfdgldesydfwcdadspdif 50 
                 v+ + +   + A+++++  + + v++ g d+s d w d+dsp+i 
  KOO24191.1  76 VNDDASGAWWRASIQDMRPGQVFVHYTGCDNSWDEWFDIDSPKIS 120
                 677788899*********************************995 PP

>> Agenet  Agenet domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.2   0.2   3.6e-06     0.022      11      44 ..      78     108 ..      65     116 .. 0.77

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 3.6e-06
      Agenet  11 egfrGaWfrAtilkvkegdkylVeYddlddddgs 44 
                 +   GaW+rA i ++ + +++ V Y+    d+ +
  KOO24191.1  78 DDASGAWWRASIQDM-RPGQVFVHYTG--CDNSW 108
                 44569**********.99*******99..34333 PP

>> Tudor-knot  RNA binding activity-knot of a chromodomain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.1     1e-05     0.062       3      50 ..      70     114 ..      68     116 .. 0.72

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 1e-05
                 TTTEEEEEE.TTSCEEEEEEEEEEETSSCEEEEEEETTS-CCC-EEEET CS
  Tudor-knot   3 vgckvlvrk.kdgelrkAeilsirekkgkyeYYVHYeefNkRlDeWVsa 50 
                 vg  vlv     g + +A i + r+ +     +VHY++++  +DeW + 
  KOO24191.1  70 VGDGVLVNDdASGAWWRASIQDMRPGQ----VFVHYTGCDNSWDEWFDI 114
                 566666666666777777776666654....59*************765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (419 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       510  (0.0284455); expected 358.6 (0.02)
Passed bias filter:                      418  (0.0233142); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.48u 0.26s 00:00:00.74 Elapsed: 00:00:00.42
# Mc/sec: 2996.10
//
Query:       KOO24192.1  [L=348]
Description: replication factor c subunit 5 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.2e-16   60.0   0.0    5.3e-16   59.2   0.0    1.4  1  AAA              ATPase family associated with various cellul
    2.2e-15   56.8   0.0    7.8e-15   55.1   0.0    1.9  1  Rep_fac_C        Replication factor C C-terminal domain
    7.1e-12   45.4   0.0    4.5e-10   39.5   0.1    2.2  2  DNA_pol3_delta2  DNA polymerase III, delta subunit
      1e-07   32.1   0.0    4.8e-07   29.9   0.0    2.0  1  Rad17            Rad17 P-loop domain
    3.6e-05   24.0   0.5       0.37   11.0   0.0    2.6  2  AAA_22           AAA domain
      7e-05   23.3   0.0     0.0002   21.8   0.0    1.9  1  AAA_16           AAA ATPase domain
    0.00029   20.7   0.1     0.0007   19.5   0.0    1.5  1  AAA_11           AAA domain
    0.00037   20.3   0.0     0.0013   18.5   0.0    1.9  2  RuvB_N           Holliday junction DNA helicase RuvB P-loop d
    0.00047   19.4   0.0    0.00075   18.7   0.0    1.3  1  DUF815           Protein of unknown function (DUF815)
    0.00063   19.8   0.0      0.001   19.1   0.0    1.3  1  AAA_14           AAA domain
    0.00082   19.1   0.0     0.0017   18.1   0.0    1.5  1  AAA_30           AAA domain
      0.002   18.5   0.2       0.05   13.9   0.1    2.4  3  AAA_19           AAA domain
     0.0022   18.0   0.0      0.006   16.6   0.0    1.9  1  AAA_5            AAA domain (dynein-related subfamily)
     0.0064   16.4   0.0      0.009   16.0   0.0    1.2  1  ATPase_2         ATPase domain predominantly from Archaea
     0.0066   16.0   0.0      0.011   15.2   0.0    1.3  1  AAA_7            P-loop containing dynein motor region
     0.0084   15.9   0.0      0.019   14.7   0.0    1.6  1  AAA_24           AAA domain
  ------ inclusion threshold ------
      0.024   14.2   0.1       0.12   11.9   0.1    2.1  1  AAA_25           AAA domain
      0.029   14.1   0.2       0.57    9.9   0.0    2.6  3  DEAD             DEAD/DEAH box helicase
      0.055   12.9   0.0       0.75    9.2   0.0    2.2  2  TniB             Bacterial TniB protein
      0.062   13.0   0.0       0.17   11.6   0.0    1.7  1  IstB_IS21        IstB-like ATP binding protein
      0.066   11.9   0.0        5.7    5.5   0.0    2.2  2  SNF2_N           SNF2 family N-terminal domain
      0.093   12.6   0.0       0.25   11.2   0.0    1.7  1  AAA_3            ATPase family associated with various cellul
       0.13   11.6   0.1       0.27   10.6   0.1    1.6  1  Mg_chelatase     Magnesium chelatase, subunit ChlI
       0.15   11.5   0.2        2.6    7.5   0.0    2.2  2  PhoH             PhoH-like protein


Domain annotation for each model (and alignments):
>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.2   0.0   7.1e-19   5.3e-16       1     130 [.      65     183 ..      65     185 .. 0.83

  Alignments for each domain:
  == domain 1  score: 59.2 bits;  conditional E-value: 7.1e-19
                 EEEESSTTSSHHHHHHHHHHHHT.....HEEEEEETTTCSSSSTTHHHHHHHHHHHHHHHTS..TSEEEEEETGGGHHHHHTTCCCHHHHHHHHHHHHH CS
         AAA   1 vllyGppGtGKTllakavakelg.....vefleisgsellskyvgesekkirelfkeakeka..kpsilfiDEidalaksrsgseseeeervvnqLlte 92 
                 ++lyGppGtGKT+++ a a+++      + +le+++s+ +   +    ++i+e+ ++  ++   +p+ +++DE+da+++             + +L ++
  KOO24192.1  65 LMLYGPPGTGKTSTILACAHKMYgksfpSMVLELNASDER--GIDVVREQIKEFASTR-QMFtsAPKLIILDEADAMTNPA-----------QFALRRV 149
                 58*******************9544555779*********..7777777777776653.2223459***********9988...........******* PP

                 HHHTTTSSSTEEEEEEESSGGGSTHHHHSTTSSEEEET CS
         AAA  93 ldgvkkkeskvivigatnrpdkldpallrgRfdrkiei 130
                 ++++++   +  +++++n+ +k+ pal  +R++r  + 
  KOO24192.1 150 IEKYTR---NARFCIICNYASKIIPALQ-SRCTRFRFA 183
                 ******...579999*************.999987665 PP

>> Rep_fac_C  Replication factor C C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.1   0.0     1e-17   7.8e-15       1      86 [.     250     335 ..     250     336 .. 0.95

  Alignments for each domain:
  == domain 1  score: 55.1 bits;  conditional E-value: 1e-17
                 --HHHHHHHHHHHHHT-HHHHHHHHHHHHHHC---HHHHHHHHHHHGCCS..S-H.HHHHHHHHHHHHHHHHHHCTH-HHHHHHHHH CS
   Rep_fac_C   1 phpteieeileaclngdfeeaykklrellvekGysaediltqlhrvvkeqeelpe.aqkleilellgeiekrlveGasehlqlsall 86 
                 p p++ie++l+++l+++f  a     e ++ kG++++d++t+l ++v  ++  p+  +k++++  l+++e+rl+ G++e++ql++++
  KOO24192.1 250 PAPEDIEQLLAWLLQEEFGSALRLAWEAMCTKGLALTDVVTKLSEFVSLMD-SPDpLAKARLVASLADVEHRLSVGTNEKMQLAGMV 335
                 679*********************************************985.677588*****99********************97 PP

>> DNA_pol3_delta2  DNA polymerase III, delta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.6   0.0     0.067        50       2      44 ..      46      87 ..      45      97 .. 0.86
   2 !   39.5   0.1   6.1e-13   4.5e-10      84     162 ..     105     185 ..      93     186 .. 0.85

  Alignments for each domain:
  == domain 1  score: 3.6 bits;  conditional E-value: 0.067
  DNA_pol3_delta2  2 qeealkilskalksgrlahayLfeGdegigkkelalnlakall 44
                     +ee+++ + + +  g+l h ++++G+ g+gk ++ l+ a+++ 
       KOO24192.1 46 HEEIISTITRLIDAGNLPH-LMLYGPPGTGKTSTILACAHKMY 87
                     5778889999999999999.5679************9999876 PP

  == domain 2  score: 39.5 bits;  conditional E-value: 6.1e-13
  DNA_pol3_delta2  84 kldqirelieel.s.rkpreskkkiiiiedaekmtksAaNalLktlEEPsenaifiLitsdtnklLktirSRcqelkfspl 162
                       +d +re i+e+ s r+ + s  k+ii+++a+ mt+ A+ al +++E   +na f +i +  +k+++ ++SRc  ++f pl
       KOO24192.1 105 GIDVVREQIKEFaStRQMFTSAPKLIILDEADAMTNPAQFALRRVIEKYTRNARFCIICNYASKIIPALQSRCTRFRFAPL 185
                      68999955555514134456**********************************************************997 PP

>> Rad17  Rad17 P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.9   0.0   6.4e-10   4.8e-07       8      73 ..      30      91 ..      23     169 .. 0.82

  Alignments for each domain:
  == domain 1  score: 29.9 bits;  conditional E-value: 6.4e-10
       Rad17  8 lWfekykPekaeelavhkkkieevkewlkadvLesrkkriLLisGPsGCgkstvvkvLs.kelgikl 73
                +W+eky+P+ ++el  h + i+ + + ++a  L++      ++ GP+G gk+ ++   + k +g ++
  KOO24192.1 30 PWVEKYRPKEMAELVSHEEIISTITRLIDAGNLPHL-----MLYGPPGTGKTSTILACAhKMYGKSF 91
                8********************************975.....999*******8776544316666554 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.8   0.1   0.00061      0.45       7      24 ..      64      81 ..      60      90 .. 0.86
   2 !   11.0   0.0    0.0005      0.37      74     109 ..     105     146 ..      80     168 .. 0.75

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00061
      AAA_22  7 ilvvtGesGtGKTtllrr 24
                +l+++G++GtGKT ++  
  KOO24192.1 64 HLMLYGPPGTGKTSTILA 81
                799**********99865 PP

  == domain 2  score: 11.0 bits;  conditional E-value: 0.0005
      AAA_22  74 sseellealeqalrarav....ielliiDEaqhlrs..eeal 109
                   + ++e++ + +++r++    ++l+i+DEa+ +++  + al
  KOO24192.1 105 GIDVVREQIKEFASTRQMftsaPKLIILDEADAMTNpaQFAL 146
                 4556679999999999999**************952223333 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.8   0.0   2.7e-07    0.0002       2      63 ..      43     116 ..      42     209 .. 0.63

  Alignments for each domain:
  == domain 1  score: 21.8 bits;  conditional E-value: 2.7e-07
      AAA_16   2 lvGReeeleqLlsalervrsgrpelvllsGesGvGKsslvrellralekd...............ggiflrgkcdql 63 
                 lv  ee +++++++++   +g  + ++l+G++G+GK+s + ++++ + ++               g+ ++r++ +++
  KOO24192.1  43 LVSHEEIISTITRLID---AGNLPHLMLYGPPGTGKTSTILACAHKMYGKsfpsmvlelnasderGIDVVREQIKEF 116
                 5666889999999998...67789***************97777766555465555555555554344455555555 PP

>> AAA_11  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.5   0.0   9.4e-07    0.0007      20      43 ..      65      93 ..      46     156 .. 0.71

  Alignments for each domain:
  == domain 1  score: 19.5 bits;  conditional E-value: 9.4e-07
      AAA_11 20 tliqGPPGtgKTktivellsqll.....s 43
                 ++ GPPGtgKT+ti++  ++++     s
  KOO24192.1 65 LMLYGPPGTGKTSTILACAHKMYgksfpS 93
                6899*****************95333331 PP

>> RuvB_N  Holliday junction DNA helicase RuvB P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.5   0.0   1.8e-06    0.0013       2      57 ..      36      86 ..      35      96 .. 0.88
   2 ?   -3.2   0.0         8     6e+03      49      83 ..     259     293 ..     252     298 .. 0.72

  Alignments for each domain:
  == domain 1  score: 18.5 bits;  conditional E-value: 1.8e-06
      RuvB_N  2 rPksleeyigqekvkeklkifieaakkreealdhvllyGpPGlGkttlakiiakel 57
                rPk+++e +  e++ ++++ +i+a      +l h++lyGpPG Gkt+     a+++
  KOO24192.1 36 RPKEMAELVSHEEIISTITRLIDAG-----NLPHLMLYGPPGTGKTSTILACAHKM 86
                999*************999999997.....589*************9877777766 PP

  == domain 2  score: -3.2 bits;  conditional E-value: 8
      RuvB_N  49 lakiiakelgvklkitsgPvlekagdlaalltnle 83 
                 la ++ +e+g+ l+ +   +  k   l+ ++t+l+
  KOO24192.1 259 LAWLLQEEFGSALRLAWEAMCTKGLALTDVVTKLS 293
                 56677777777777777777777777777777665 PP

>> DUF815  Protein of unknown function (DUF815)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.7   0.0     1e-06   0.00075      12     104 ..      22     115 ..      15     136 .. 0.66

  Alignments for each domain:
  == domain 1  score: 18.7 bits;  conditional E-value: 1e-06
      DUF815  12 eegalepveevdevklddLvgidkqkealventeqfleglpannvLLwGarGtGKSslvkallneyaeeg..Lrlievekedlkelpklvellre 104
                 +++++++++ v++ + +++ ++ ++ e++++ ++++++  +  +++L+G  GtGK s++ a+ +++  ++    ++e++ +d + ++ + e+++e
  KOO24192.1  22 RQEQVASLPWVEKYRPKEMAELVSH-EEIISTITRLIDAGNLPHLMLYGPPGTGKTSTILACAHKMYGKSfpSMVLELNASDERGIDVVREQIKE 115
                 4445555555555566666655544.45667777888888899********************99999987734445555555555555554443 PP

>> AAA_14  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.1   0.0   1.4e-06     0.001       5      97 ..      65     161 ..      62     186 .. 0.74

  Alignments for each domain:
  == domain 1  score: 19.1 bits;  conditional E-value: 1.4e-06
      AAA_14   5 lvitGaRrvGKTtllkqlikell..vkkesilyinldderdkkladpekllelilek.lkeekktylflDEiqevpe.wekalkslvdeg.knldviv 97 
                 l++ G+  +GKT  +  ++++ +    ++ +l++n  der  +   + ++ e+   + + ++  ++++lDE+  +++ ++ al+++++++ +n ++++
  KOO24192.1  65 LMLYGPPGTGKTSTILACAHKMYgkSFPSMVLELNASDERGIDVVRE-QIKEFASTRqMFTSAPKLIILDEADAMTNpAQFALRRVIEKYtRNARFCI 161
                 6799***************9999776677788888888877654433.34444444443335899********9988355578888887777777766 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.1   0.0   2.2e-06    0.0017      22     114 ..      66     152 ..      52     163 .. 0.75

  Alignments for each domain:
  == domain 1  score: 18.1 bits;  conditional E-value: 2.2e-06
      AAA_30  22 vltGpAGtGKttalkal.reaweaa.ggrvi.glAptgkaAkvLaeelgieastiakllkrlkgrarlepgtllivDEagmvdtkqlaallkaaek 114
                 +l Gp+GtGKt ++ a   +++ ++    v+ + A+ ++  +v++e++   ast + ++    +     + +l+i DEa  + +    al + +ek
  KOO24192.1  66 MLYGPPGTGKTSTILACaHKMYGKSfPSMVLeLNASDERGIDVVREQIKEFASTRQMFT----S-----APKLIILDEADAMTNPAQFALRRVIEK 152
                 688*******976655538888888654444388999************9999999999....3.....449*******98866555555555544 PP

>> AAA_19  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.9   0.1   6.6e-05      0.05      11      35 ..      63      87 ..      54     125 .. 0.69
   2 ?    2.2   0.0      0.29   2.1e+02      95     126 ..     119     151 ..      96     164 .. 0.66
   3 ?   -2.2   0.0       6.2   4.7e+03      44      61 ..     224     241 ..     189     312 .. 0.64

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 6.6e-05
      AAA_19 11 kvllvtaGpGtGKTrvlkhivallv 35
                ++l++ ++pGtGKT ++ +  + + 
  KOO24192.1 63 PHLMLYGPPGTGKTSTILACAHKMY 87
                6789************988766554 PP

  == domain 2  score: 2.2 bits;  conditional E-value: 0.29
      AAA_19  95 eeekklqeeellivDEfqdvd.elqyrLlkall 126
                 +++ +  + +l+i DE+  ++ + q++L + + 
  KOO24192.1 119 TRQMFTSAPKLIILDEADAMTnPAQFALRRVIE 151
                 33334444459******9888799998866655 PP

  == domain 3  score: -2.2 bits;  conditional E-value: 6.2
      AAA_19  44 eillvaftgrAakelrer 61 
                 +i ++  t+ A+ e++++
  KOO24192.1 224 SINILQSTHMAMGEVSTA 241
                 455555555555555443 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   0.0     8e-06     0.006       1      90 [.      64     151 ..      64     212 .. 0.72

  Alignments for each domain:
  == domain 1  score: 16.6 bits;  conditional E-value: 8e-06
                 EEEEE--SSSSHHHHHHHGGGGB.S--EEEEE--TT--HHHHH--B--.........--------G-SEEEEESGGG--HHHHHHHHHHHH CS
       AAA_5   1 dvlLvGppGtgKselaerlaaal.nreveyvqltrdtteedlkgrreikngttslvdsplvraaregeilvlDEveraesevlnsLlslle 90 
                 +++L GppGtgK++ +   a+ + ++++  + l  + + e  +  ++  ++ +++     +     +++++lDE + +   ++ +L +++e
  KOO24192.1  64 HLMLYGPPGTGKTSTILACAHKMyGKSFPSMVLELNASDERGIDVVR--EQIKEFASTRQM-FTSAPKLIILDEADAMTNPAQFALRRVIE 151
                 79*******************99777776666665555444333333..333333333333.33466677777777666666666666555 PP

>> ATPase_2  ATPase domain predominantly from Archaea
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.0   1.2e-05     0.009       5     119 ..      47     159 ..      43     170 .. 0.79

  Alignments for each domain:
  == domain 1  score: 16.0 bits;  conditional E-value: 1.2e-05
    ATPase_2   5 ekelkeleeilerepneiyfiYGpegsGKtaLlkeiienledkdk..yviyyialreesiskldefieeeeekkklekalgiavpkaeleeilkekskl 101
                 e+ ++ + ++++ ++ + +++YGp g GKt+ +   + +   k++   v+ ++a  e+ i+ ++e i+e  + +++   + + +  +e++++    ++ 
  KOO24192.1  47 EEIISTITRLIDAGNLPHLMLYGPPGTGKTSTILACAHKMYGKSFpsMVLELNASDERGIDVVREQIKEFASTRQMFTSAPKLIILDEADAM----TNP 141
                 667899**********************************7777654666677777778888888888877777777777666666666555....777 PP

    ATPase_2 102 vfkaielllekikkkgkk 119
                 ++ a+ +++ek +++++ 
  KOO24192.1 142 AQFALRRVIEKYTRNARF 159
                 888888888888777664 PP

>> AAA_7  P-loop containing dynein motor region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.0   1.5e-05     0.011      35      72 ..      64     101 ..      47     121 .. 0.89

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 1.5e-05
       AAA_7  35 pvllvGptGtGKtviikdllkkldkekylsltinfsaq 72 
                 +++l+Gp GtGKt++i  + +k+  +++ s++++++a+
  KOO24192.1  64 HLMLYGPPGTGKTSTILACAHKMYGKSFPSMVLELNAS 101
                 79********************9999999999999875 PP

>> AAA_24  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   0.0   2.5e-05     0.019       5      81 ..      65     142 ..      63     159 .. 0.61

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 2.5e-05
      AAA_24   5 iliyGpsgiGKTtlakelgpkplfidtekGlksldadkfpdieswedfldevvel....aaeladyktlviDtideleelc 81 
                 +++yGp+g+GKT++++    +  +   + ++  l   +  d ++++ ++++++e+    +   +  k +++D +d + + +
  KOO24192.1  65 LMLYGPPGTGKTSTILAC-AHKMYGKSFPSM-VL-ELNASDERGIDVVREQIKEFastrQMFTSAPKLIILDEADAMTNPA 142
                 79************9999.555555555544.22.2222334466666677777633333333334667777777776655 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.1   0.00016      0.12      36      65 ..      65      93 ..      48     152 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 0.00016
      AAA_25 36 allaGapgtGKttlaldlalavatGkpwlg 65
                 +l+G+pgtGKt   l  a+++  Gk+++ 
  KOO24192.1 65 LMLYGPPGTGKTSTILACAHKMY-GKSFPS 93
                589***************99998.777765 PP

>> DEAD  DEAD/DEAH box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.3   0.0      0.68   5.1e+02      16      35 ..      64      83 ..      47      96 .. 0.73
   2 ?    9.9   0.0   0.00076      0.57     107     147 ..     112     151 ..      96     163 .. 0.73
   3 ?   -1.0   0.0       1.8   1.3e+03      91     113 ..     194     221 ..     174     240 .. 0.59

  Alignments for each domain:
  == domain 1  score: 0.3 bits;  conditional E-value: 0.68
                EEEEEESTTSSHHHHHHHHH CS
                xxxxxxxxxxxxxxxxxxxx RF
        DEAD 16 dvlvaaeTGsGKTlaflipv 35
                ++++ ++ G+GKT   l  +
  KOO24192.1 64 HLMLYGPPGTGKTSTILACA 83
                56788999*****9866544 PP

  == domain 2  score: 9.9 bits;  conditional E-value: 0.00076
                 HHHHHHHCTSSHCTTEEEEEEETHHHHHHTTTHHHHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD 107 rlddllstgklnlsqvrflVlDEadrlldqgfsdfinriln 147
                 ++ ++ st+++ +s  ++++lDEad + +   +  ++r+++
  KOO24192.1 112 QIKEFASTRQMFTSAPKLIILDEADAMTNP-AQFALRRVIE 151
                 3444457999999**************987.5555555555 PP

  == domain 3  score: -1.0 bits;  conditional E-value: 1.8
                 HHHHHTTCSEEEEEHHHHHHHH......H CS
                 xxxxxxxxxxxxxxxxxxxxxx......x RF
        DEAD  91 lskldngvdivvgtpgrlddll......s 113
                 l+++ ++++ v++tp+ l   +       
  KOO24192.1 194 LQVV-ATAEQVMSTPEGLNACVtlgegdM 221
                 4444.556666666666666553433322 PP

>> TniB  Bacterial TniB protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.2   0.0     0.001      0.75      28      59 ..      55      86 ..      33     126 .. 0.62
   2 ?    2.0   0.0      0.16   1.2e+02     111     133 ..     118     140 ..     110     174 .. 0.79

  Alignments for each domain:
  == domain 1  score: 9.2 bits;  conditional E-value: 0.001
        TniB 28 eypkrkrmpnlllvGdsnnGKtmivekFarlh 59
                +  ++   p+l+l+G++ +GKt+ +  +a++ 
  KOO24192.1 55 RLIDAGNLPHLMLYGPPGTGKTSTILACAHKM 86
                444567889*************9987776433 PP

  == domain 2  score: 2.0 bits;  conditional E-value: 0.16
        TniB 111 vlrllrelkvrvLiiDEihnlla 133
                   r + +  ++++i+DE + + +
  KOO24192.1 118 STRQMFTSAPKLIILDEADAMTN 140
                 5677888999********99875 PP

>> IstB_IS21  IstB-like ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   0.00023      0.17      50     136 ..      65     152 ..      46     167 .. 0.61

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 0.00023
   IstB_IS21  50 ivllGpsGvGKshlaialgveavragl..svlfvrvedLveelkra.rrdgklaralkrllkv.dllilDdlgllpldqaeaellfeviek 136
                 ++l Gp+G+GK+    a +++   + +   vl + ++d    + +  ++  ++a++ + ++ + +l+ilD+       + ++  l +viek
  KOO24192.1  65 LMLYGPPGTGKTSTILACAHKMYGKSFpsMVLELNASDER-GIDVVrEQIKEFASTRQMFTSApKLIILDEADAM--TNPAQFALRRVIEK 152
                 799********98666666666655541144444444432.2333303334455555555444499999997544..34455566666654 PP

>> SNF2_N  SNF2 family N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.5   0.0    0.0077       5.7     166     211 ..     115     161 ..     104     162 .. 0.81
   2 ?    4.1   0.0     0.021        16     179     237 ..     212     269 ..     190     302 .. 0.79

  Alignments for each domain:
  == domain 1  score: 5.5 bits;  conditional E-value: 0.0077
                 .....TTS-S-S-SEEEES-GGGT--T.TSHHHHHHHH---S-EEEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxx RF
      SNF2_N 166 lqkkrsvlkqvewkrvvlDEghtlkns.tskaaeavskLstsnrwil 211
                  +++  ++     k ++lDE+  + n  +  ++ +++k+  + r ++
  KOO24192.1 115 EFASTRQMFTSAPKLIILDEADAMTNPaQFALRRVIEKYTRNARFCI 161
                 445666677778899************899999******99999996 PP

  == domain 2  score: 4.1 bits;  conditional E-value: 0.021
                 SEEEES-GGGT--T..TSHHHHHHHH---S-EEEE-S--SSS-HHHHHHHHHHH-TTTT-- CS
                 xxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
      SNF2_N 179 krvvlDEghtlkns..tskaaeavskLstsnrwiltGTPiqnsledlygLlkfLreepfge 237
                  +v l Eg + k+    +++++a+ + st n   +tG P +++ e    Ll+ L  e fg+
  KOO24192.1 212 ACVTLGEGDMRKSIniLQSTHMAMGEVSTANVYQVTGCPAPEDIE---QLLAWLLQEEFGS 269
                 57888899998888555889999999*************997665...5566666666665 PP

>> AAA_3  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   0.00033      0.25       1      86 [.      64     150 ..      64     158 .. 0.78

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00033
       AAA_3   1 hvllegvPGlaktllvkalakald.lefkriqftpdllPsdilGtevfeekekefefkkGpvfa..nllladeinrappktqsalleam 86 
                 h++l g PG++kt ++ a a+++   +f    +  +l  sd  G++v++e+ kef  ++    +  +l++ de +  +  +q al  ++
  KOO24192.1  64 HLMLYGPPGTGKTSTILACAHKMYgKSFPS--MVLELNASDERGIDVVREQIKEFASTRQMFTSapKLIILDEADAMTNPAQFALRRVI 150
                 99**************99998875155654..56689999**********999998776543323368999999888888888876665 PP

>> Mg_chelatase  Magnesium chelatase, subunit ChlI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.1   0.00037      0.27      23      38 ..      63      78 ..      40     127 .. 0.75

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00037
  Mg_chelatase 23 HnlllvGppGsGKtml 38
                   +l+l+GppG+GKt  
    KOO24192.1 63 PHLMLYGPPGTGKTST 78
                  589**********843 PP

>> PhoH  PhoH-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.5   0.0    0.0034       2.6      22      46 ..      65      89 ..      47     108 .. 0.83
   2 ?    1.6   0.0      0.21   1.6e+02     121     134 ..     128     141 ..     112     167 .. 0.76

  Alignments for each domain:
  == domain 1  score: 7.5 bits;  conditional E-value: 0.0034
                EEEE--TTSSTTHHHHHHHHHHHHT CS
        PhoH 22 vfaiGpaGtGKtylavalavealkk 46
                ++  Gp GtGKt   +a+a +++ k
  KOO24192.1 65 LMLYGPPGTGKTSTILACAHKMYGK 89
                5789*********999999988765 PP

  == domain 2  score: 1.6 bits;  conditional E-value: 0.21
                 EEEEE-SGGG--HH CS
        PhoH 121 afvilDEAQnttke 134
                 +++ilDEA  +t+ 
  KOO24192.1 128 KLIILDEADAMTNP 141
                 68******999864 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (348 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       449  (0.0250432); expected 358.6 (0.02)
Passed bias filter:                      422  (0.0235373); expected 358.6 (0.02)
Passed Vit filter:                        80  (0.00446204); expected 17.9 (0.001)
Passed Fwd filter:                        24  (0.00133861); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              24  [number of targets reported over threshold]
# CPU time: 0.55u 0.29s 00:00:00.84 Elapsed: 00:00:00.43
# Mc/sec: 2452.41
//
Query:       KOO24193.1  [L=647]
Description: fibrocystin-l [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.12   12.2   0.1       0.25   11.2   0.1    1.4  1  DUF1348   Protein of unknown function (DUF1348)


Domain annotation for each model (and alignments):
>> DUF1348  Protein of unknown function (DUF1348)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.1   1.4e-05      0.25      20      50 ..     349     378 ..     332     383 .. 0.68

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 1.4e-05
     DUF1348  20 ntrdpekvalaytedsvWrnrdeflkgreei 50 
                 n r  ++ al+ ++ds Wrnr  f++g e+i
  KOO24193.1 349 NERR-TRRALSSATDSDWRNRMVFFTGDERI 378
                 3333.344677789*************9988 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (647 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       374  (0.0208601); expected 358.6 (0.02)
Passed bias filter:                      341  (0.0190195); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.52u 0.24s 00:00:00.76 Elapsed: 00:00:00.38
# Mc/sec: 5044.13
//
Query:       KOO24194.1  [L=829]
Description: egf domain-containing protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.5e-13   50.0  22.3    5.4e-09   36.1   5.4    3.3  3  EGF_CA           Calcium-binding EGF domain
    1.9e-08   34.0   2.1      0.005   16.8   0.7    2.8  2  Arm              Armadillo/beta-catenin-like repeat
    0.00022   21.4  23.6     0.0088   16.2   3.6    3.4  3  EGF_3            EGF domain
      0.003   17.9   1.9      0.003   17.9   1.9    2.4  3  DUF4215          Domain of unknown function (DUF4215)
  ------ inclusion threshold ------
       0.12   12.8   2.4       0.34   11.4   2.4    1.8  1  Alkyl_sulf_dimr  Alkyl sulfatase dimerisation
       0.12   12.4   0.0        2.1    8.4   0.1    2.3  2  Atx10homo_assoc  Spinocerebellar ataxia type 10 protein domai
       0.23   11.8  18.7       0.73   10.2   6.9    2.9  2  EGF              EGF-like domain
       0.41   11.4  19.7       0.36   11.5   6.9    3.4  3  hEGF             Human growth factor-like EGF
        6.2    6.9  12.8          8    6.5   0.0    4.5  4  cEGF             Complement Clr-like EGF-like


Domain annotation for each model (and alignments):
>> EGF_CA  Calcium-binding EGF domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.5   3.3   2.3e-08   4.6e-05       1      32 [.     351     389 ..     351     399 .. 0.76
   2 ?   -2.4   0.3         3     6e+03      23      28 ..     417     422 ..     415     422 .. 0.85
   3 !   36.1   5.4   2.7e-12   5.4e-09       1      32 [.     423     455 ..     423     462 .. 0.91

  Alignments for each domain:
  == domain 1  score: 23.5 bits;  conditional E-value: 2.3e-08
      EGF_CA   1 DvdECa.......sgthnCpentvCvNteGsfeCvCeeg 32 
                 Dv+EC+         +h C +n+ CvN +G ++C C+++
  KOO24194.1 351 DVNECTlasalptASPHRCTANSNCVNLDGNYTCACKSF 389
                 99999733332212459*******************986 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 3
      EGF_CA  23 GsfeCv 28 
                 Gsf+C+
  KOO24194.1 417 GSFSCE 422
                 9****5 PP

  == domain 3  score: 36.1 bits;  conditional E-value: 2.7e-12
      EGF_CA   1 DvdECasgthnC.pentvCvNteGsfeCvCeeg 32 
                 DvdEC +gt+ C +e + C+Nt+G+++C+C + 
  KOO24194.1 423 DVDECVNGTDRCdRERGRCINTIGGYQCQCISP 455
                 9***********9899**************765 PP

>> Arm  Armadillo/beta-catenin-like repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   0.7   2.5e-06     0.005       6      39 ..     695     728 ..     690     730 .. 0.93
   2 !   15.7   0.0   5.9e-06     0.012       1      40 [.     732     771 ..     732     772 .. 0.94

  Alignments for each domain:
  == domain 1  score: 16.8 bits;  conditional E-value: 2.5e-06
                 HHHHHTTHHHHHHHHTTTSSHHHHHHHHHHHHHH CS
         Arm   6 davieaGavppLvrLLssedeevqeeAawALsNL 39 
                 +a+  aG++++Lv+L   +d e + +Aa+AL NL
  KOO24194.1 695 KAIAAAGGIEALVALAVAGDAEGKANAAAALLNL 728
                 68899****************************9 PP

  == domain 2  score: 15.7 bits;  conditional E-value: 5.9e-06
                 SHHHHHHHHHTTHHHHHHHHTTTSSHHHHHHHHHHHHHHT CS
         Arm   1 nsenkdavieaGavppLvrLLssedeevqeeAawALsNLa 40 
                 n +n  a+  aG++++Lv+  +++d + +  Aa+AL+ La
  KOO24194.1 732 NAPNQAAITAAGGIEALVAIARDGDADGKMYAAAALRGLA 771
                 5689999******************************987 PP

>> EGF_3  EGF domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.6   1.0      0.34   6.7e+02      21      36 .]     331     349 ..     313     349 .. 0.78
   2 !   16.2   3.6   4.4e-06    0.0088       5      27 ..     366     388 ..     363     393 .. 0.89
   3 !   15.2   4.2   9.2e-06     0.018       1      34 [.     427     462 ..     427     463 .. 0.84

  Alignments for each domain:
  == domain 1  score: 0.6 bits;  conditional E-value: 0.34
       EGF_3  21 vtCtCk...egykGdGvtC 36 
                 ++C+ +   +gy G G++C
  KOO24194.1 331 FSCSSTkdvAGYWGTGFFC 349
                 6666656678********* PP

  == domain 2  score: 16.2 bits;  conditional E-value: 4.4e-06
       EGF_3   5 nggCdpnAeCtntdgsvtCtCke 27 
                  + C +n +C n dg++tC Ck+
  KOO24194.1 366 PHRCTANSNCVNLDGNYTCACKS 388
                 689******************95 PP

  == domain 3  score: 15.2 bits;  conditional E-value: 9.2e-06
       EGF_3   1 CavnnggCdpn.AeCtntdgsvtCtCk.egykGdGv 34 
                 C ++++ Cd +   C+nt g ++C+C  + + GdG+
  KOO24194.1 427 CVNGTDRCDRErGRCINTIGGYQCQCIsPFFGGDGF 462
                 99*******76268*************555568997 PP

>> DUF4215  Domain of unknown function (DUF4215)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.9   1.9   1.5e-06     0.003      20      43 ..     298     321 ..     296     333 .. 0.93
   2 ?   -6.9   3.8         9   1.8e+04      35      46 ..     373     384 ..     369     387 .. 0.50
   3 ?   -7.0   6.2         9   1.8e+04      24      46 ..     426     450 ..     419     453 .. 0.40

  Alignments for each domain:
  == domain 1  score: 17.9 bits;  conditional E-value: 1.5e-06
     DUF4215  20 iCGDgiiagnEqCddgnqvqndgC 43 
                 iCG+gi +  E Cdd n+   dgC
  KOO24194.1 298 ICGNGIRSTAEICDDSNTAGGDGC 321
                 9*********************** PP

  == domain 2  score: -6.9 bits;  conditional E-value: 9
     DUF4215  35 gnqvqndgCnnC 46 
                  n+v+ dg + C
  KOO24194.1 373 SNCVNLDGNYTC 384
                 455555544442 PP

  == domain 3  score: -7.0 bits;  conditional E-value: 9
     DUF4215  24 giiagnEqCddg..nqvqndgCnnC 46 
                  +++g+  Cd     +++  g ++C
  KOO24194.1 426 ECVNGTDRCDRErgRCINTIGGYQC 450
                 3344444444221122222233444 PP

>> Alkyl_sulf_dimr  Alkyl sulfatase dimerisation
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   2.4   0.00017      0.34      54     106 ..     688     740 ..     684     789 .. 0.73

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00017
                      -HHHHHHHHHHHTTSHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHH CS
  Alkyl_sulf_dimr  54 ppeekakrlvelmGgaekvlekakealkegdyrwaaellnhlvfadpenaeak 106
                      p++ + ++ ++++Gg e++++ a +  +eg++++aa lln lv + p++a+  
       KOO24194.1 688 PQTSSTQKAIAAAGGIEALVALAVAGDAEGKANAAAALLNLLVDNAPNQAAIT 740
                      456678999***********************************988863322 PP

>> Atx10homo_assoc  Spinocerebellar ataxia type 10 protein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.1   0.0    0.0027       5.4       4      68 ..     678     740 ..     676     750 .. 0.85
   2 ?    8.4   0.1     0.001       2.1       7      75 ..     723     789 ..     718     800 .. 0.79

  Alignments for each domain:
  == domain 1  score: 7.1 bits;  conditional E-value: 0.0027
  Atx10homo_assoc   4 elvrllgnlvyknkevqdkvreldgleliLsqcniDdnnPfirewailairnLlegneenqelva 68 
                       +v+ +g+l  + +++q+ + + +g+e++    +  d +   +  a  a+ nLl +n+ nq+ + 
       KOO24194.1 678 TVVERVGTLDPQTSSTQKAIAAAGGIEALVALAVAGDAE--GKANAAAALLNLLVDNAPNQAAIT 740
                      577888888889999999999999999999988877766..4778999*************9996 PP

  == domain 2  score: 8.4 bits;  conditional E-value: 0.001
  Atx10homo_assoc   7 rllgnlvyknkevqdkvreldgleliLsqcniDdnnPfirewailairnLlegneenqelvaeLeakgv 75 
                      + l nl  +n  +q  + + +g+e++    + D +    + +a  a+r L ++n++n + + +  a++v
       KOO24194.1 723 AALLNLLVDNAPNQAAITAAGGIEALVAIAR-DGDA-DGKMYAAAALRGLAHKNAANYAAIVAAGAEDV 789
                      5677999999**************9876554.4433.35889***************999877766666 PP

>> EGF  EGF-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.3   3.9     0.006        12       4      25 ..     367     387 ..     365     388 .. 0.80
   2 ?   10.2   6.9   0.00037      0.73       9      30 ..     438     458 ..     427     459 .. 0.91

  Alignments for each domain:
  == domain 1  score: 6.3 bits;  conditional E-value: 0.006
                 TTSTTT-EEEEETTTEEEEEEC CS
         EGF   4 npCsngGtCvdtgrggytCiCp 25 
                 ++C  +  Cv++  g ytC C+
  KOO24194.1 367 HRCTANSNCVNLD-GNYTCACK 387
                 55666667*****.*******8 PP

  == domain 2  score: 10.2 bits;  conditional E-value: 0.00037
                 T-EEEEETTTEEEEEECTTEES CS
         EGF   9 gGtCvdtgrggytCiCpeGytG 30 
                 +G+C++t  ggy+C+C ++++G
  KOO24194.1 438 RGRCINTI-GGYQCQCISPFFG 458
                 799*****.*******888877 PP

>> hEGF  Human growth factor-like EGF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.5   4.0      0.03        59       6      19 ..     374     387 ..     369     388 .. 0.86
   2 ?   -1.0   0.0       1.6   3.1e+03       1       8 [.     427     435 ..     427     438 .. 0.83
   3 ?   11.5   6.9   0.00018      0.36       4      18 ..     438     452 ..     434     452 .. 0.88

  Alignments for each domain:
  == domain 1  score: 4.5 bits;  conditional E-value: 0.03
                 EES..-SS.-EE-- CS
        hEGF   6 tCidgvggykCiCp 19 
                  C+++ g+y+C C+
  KOO24194.1 374 NCVNLDGNYTCACK 387
                 6************8 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 1.6
                 --TT-.EES CS
        hEGF   1 CnngG.tCi 8  
                 C ng+ +C+
  KOO24194.1 427 CVNGTdRCD 435
                 999988887 PP

  == domain 3  score: 11.5 bits;  conditional E-value: 0.00018
                 T-EES..-SS.-EE- CS
        hEGF   4 gGtCidgvggykCiC 18 
                  G+Ci+++ggy+C+C
  KOO24194.1 438 RGRCINTIGGYQCQC 452
                 39************* PP

>> cEGF  Complement Clr-like EGF-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.5   0.1     0.034        68       8      24 .]     340     354 ..     330     354 .. 0.91
   2 ?    1.5   1.0      0.15     3e+02       2       8 ..     382     388 ..     381     388 .. 0.87
   3 ?    6.5   0.0     0.004         8      16      24 .]     417     426 ..     402     426 .. 0.60
   4 ?    0.2   0.7      0.36   7.3e+02       1       6 [.     447     452 ..     447     454 .. 0.89

  Alignments for each domain:
  == domain 1  score: 3.5 bits;  conditional E-value: 0.034
                 TTEEE.ETTTEEEE--T CS
        cEGF   8 pGYkltpdGrsCtDIDE 24 
                 +GY   ++G  C D++E
  KOO24194.1 340 AGYW--GTGFFCADVNE 354
                 5888..89999*****9 PP

  == domain 2  score: 1.5 bits;  conditional E-value: 0.15
                 EEEE-ST CS
        cEGF   2 YrCsCpp 8  
                 Y+C+C++
  KOO24194.1 382 YTCACKS 388
                 *****95 PP

  == domain 3  score: 6.5 bits;  conditional E-value: 0.004
                 T.TEEEE--T CS
        cEGF  16 G.rsCtDIDE 24 
                 G  sC+D+DE
  KOO24194.1 417 GsFSCEDVDE 426
                 3357*****9 PP

  == domain 4  score: 0.2 bits;  conditional E-value: 0.36
                 SEEEE- CS
        cEGF   1 SYrCsC 6  
                 +Y+C+C
  KOO24194.1 447 GYQCQC 452
                 6***** PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (829 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       675  (0.0376485); expected 358.6 (0.02)
Passed bias filter:                      418  (0.0233142); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.61u 0.27s 00:00:00.88 Elapsed: 00:00:00.40
# Mc/sec: 6254.86
//
Query:       KOO24195.1  [L=1637]
Description: ipt tig domain containing protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    9.4e-45  150.6  28.7    9.8e-11   41.6   0.1    6.0  5  TIG           IPT/TIG domain
      9e-26   90.4   0.0    2.7e-25   88.8   0.0    1.9  1  G8            G8 domain
    4.1e-08   33.2   6.7    0.00069   19.5   3.5    3.1  2  Beta_helix    Right handed beta helix region
    0.00021   21.4   0.0    0.00054   20.1   0.0    1.6  1  F5_F8_type_C  F5/8 type C domain


Domain annotation for each model (and alignments):
>> TIG  IPT/TIG domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.1   0.9   1.5e-09   6.7e-06       1      77 [.       3      97 ..       3     102 .. 0.82
   2 !   41.6   0.1   2.2e-14   9.8e-11       1      64 [.     110     172 ..     110     197 .. 0.88
   3 !   21.1   1.9   5.4e-08   0.00024      18      77 ..     220     281 ..     215     287 .. 0.83
   4 !   40.3   0.6   5.7e-14   2.6e-10       3      60 ..     294     348 ..     292     366 .. 0.91
   5 !   37.1   1.7   5.7e-13   2.5e-09       1      84 [.     747     841 ..     747     842 .. 0.91

  Alignments for each domain:
  == domain 1  score: 26.1 bits;  conditional E-value: 1.5e-09
         TIG  1 PvissisPnsgsasgGttititGtnFgtnssdssvtiggtpctvta......svssttl...................vcttPpgpsg.llnvsvlvdgaq 75
                Pv+++ sP + +   G+ iti+G+ ++ +++++ vt+gg+pc+v +      +     +                   +c +P+  s  ++++sv v g +
  KOO24195.1  3 PVLTNTSPRTANQ--GDVITIQGHALSLTANQNIVTVGGEPCDVLTaavdnsF-----VppncaalsctlqmrtlvnlTCRMPSLDSFaPHTISVSVAG-N 95
                8899999987777..******************************97666662.....24444477777777777999********777*******999.4 PP

         TIG 76 lr 77
                + 
  KOO24195.1 96 GA 97
                43 PP

  == domain 2  score: 41.6 bits;  conditional E-value: 2.2e-14
         TIG   1 PvissisPnsgsasgGttititGtnFgtnssdssvtiggtpctvtasvssttlvcttPpgpsgl 64 
                 Pvi+s+sP+sgs +gGt++++ G+++++ + ++ v++g+  c v   v+ ++ +c+t ++++++
  KOO24195.1 110 PVIRSVSPTSGSLAGGTLVNLYGDGLSDRVGELDVRFGSVRCRVL-VVNASQATCITSAHATQT 172
                 9********************************************.**************9443 PP

  == domain 3  score: 21.1 bits;  conditional E-value: 5.4e-08
         TIG  18 tititGtnFgtnssdssvtiggtpctvtasvssttlvcttPpgpsgllnvsvlvdg..aqlr 77 
                 ++t++G++F + +s + ++ig+tpc+ t s++ t+++c + p  sg+  v++ ++g  a ++
  KOO24195.1 220 LVTVSGSGFLSPASANVIYIGSTPCVPTDSSTATQITCNANPPLSGTQVVTLMNVGgsARGS 281
                 59**************************************9999886666666665343333 PP

  == domain 4  score: 40.3 bits;  conditional E-value: 5.7e-14
         TIG   3 issisPnsgsasgGttititGtnFgtnssdssvtiggtpctvtasvssttlvcttPpg 60 
                 +s +sP++ s +gG  ++i+G +F  ++++s+vt++g  c+++ sv st+l+ct+P++
  KOO24195.1 294 LSVLSPATVSLAGGAELVINGAGF--SETSSRVTVCGVTCPIK-SVASTSLRCTVPST 348
                 67789*******************..*****************.************87 PP

  == domain 5  score: 37.1 bits;  conditional E-value: 5.7e-13
         TIG   1 PvissisPnsgsasgGttititGtnF..gtnssdssvtiggtpctvta.svssttlvcttPpgp......sgllnvsvlvdg..aqlrsdnttft 84 
                 P ++s++P +gs++gGt +ti+  ++  + ++s++svti g++ctv+  s ss++++ctt ++       +gl +v+++  +   +  ++  t++
  KOO24195.1 747 PLVQSVTPRRGSTAGGTALTIRVEGLpaSVTASQVSVTIAGKACTVSFaSASSNEVRCTTGSYGvtslanPGLGSVQLTISSlgTAAATAEATYE 841
                 889*******************************************9899*************99*****9*******99996655555555555 PP

>> G8  G8 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   88.8   0.0   6.1e-29   2.7e-25       2     122 ..     852     972 ..     851     973 .. 0.88

  Alignments for each domain:
  == domain 1  score: 88.8 bits;  conditional E-value: 6.1e-29
          G8   2 Wggse..vP...qegdnvvIpagktvlldvsspklrsllveGtLifsddksdielnaeyilvqggGkleiGteeepfkgkatItLyGteewsstelpdl 95 
                 Wgg+   +P   ++gd+v I++g+++lld +s +l  l+v+G+L+f d+  +i+l+a+yi v g G++++Gte+epf +ka ItL+G  +  s+e+p +
  KOO24195.1 852 WGGAGytIPgleTAGDSVWIQNGQRILLD-CSVRLYMLIVQGVLQF-DR-VNINLDANYIFVMG-GSFIVGTETEPFMQKAVITLHG--SPVSNEIPVY 944
                 66665554555489**************9.9999************.88.9************6.9*********************..888899**** PP

          G8  96 gaKvlavsngGtlelhGqprk..ktwtkL 122
                 gaK+l + +++tl+lhG+p    +t+tkL
  KOO24195.1 945 GAKTLSC-RFCTLDLHGKPLLggRTHTKL 972
                 *****99.68*******997522577777 PP

>> Beta_helix  Right handed beta helix region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.5   3.5   1.5e-07   0.00069      10     144 ..    1061    1230 ..    1049    1233 .. 0.81
   2 !   13.2   0.1   1.3e-05      0.06      13      87 ..    1259    1362 ..    1251    1370 .. 0.91

  Alignments for each domain:
  == domain 1  score: 19.5 bits;  conditional E-value: 1.5e-07
                  E.EEESEEEES-SS-SEEE-SSS-................EEES-EEES......-SS-SEEE-TT.........-S-EEES-EEE---SEEE-TT- CS
  Beta_helix   10 nvtiknntisnsggyGiylrgssn...............vvienneian......nsgsGiyilgs.........snntisnntisdnngggialfg 76  
                  nv +++n+ s   ++G+++   s+               ++ien e+ +              ++          +n+ ++ n+i++ ++ +ia+ g
  KOO24195.1 1061 NVVVSGNDMSQLDKHGVHIMLHSRshesiadrsqgesltARIENIEVRYagqmgrM------GRYPihfhmigavKNSYVRQNSIHHTYNRAIAIHG 1151
                  56788888888888888877666667888888888899999999999995444442......3333455555779********************** PP

                  -S--EEES-EEES-SS-SEE-TT..-S--EEES-EEESTT--SEE---TT.........---EEES-EEES-SSEEEE- CS
  Beta_helix   77 asnnlienneitdnggsGiylny..ssnntienNiidnnagsGividdss.........snvtvtnNtitnnkgaGiav 144 
                   +   +++n  ++++g+ +++++   ++n+i++N   n +++ + +++ +          +++v+ N++ ++  +G+++
  KOO24195.1 1152 VHFLRVQDNVAFETRGHTYFVEDgvETRNVITGNLGANTREAFVGLTSDAtpatywlvnGDNYVERNIAAGSTHYGFWF 1230
                  ****************999999889999********9999666666666677777778889999999999999999885 PP

  == domain 2  score: 13.2 bits;  conditional E-value: 1.3e-05
                  EESEEEES-SS-SEEE-SSS-....................EEES-EEES..........-SS-SEEE-TT-S-EEES-EEE---SEEE-TT--S-- CS
  Beta_helix   13 iknntisnsggyGiylrgssn...................vvienneian..........nsgsGiyilgssnntisnntisdnngggialfgasnn 80  
                  + +n+ +n+g+yG+ + ++++                    v  nn++a           n+ +Gi   +++ + i + ++ dnn  gi  +ga+++
  KOO24195.1 1259 FADNEAHNNGRYGLRIFTGRSphngegmpgfypvqarscdPVSANNTFATarfqrqyswrNGKNGITFGSVAAVHIIDAVVADNNMRGIEGTGADGV 1355
                  789999******************************9999888899999999999999*************************************99 PP

                  EEES-EE CS
  Beta_helix   81 liennei 87  
                  ++   ++
  KOO24195.1 1356 VVGLDTV 1362
                  9866655 PP

>> F5_F8_type_C  F5/8 type C domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.1   0.0   1.2e-07   0.00054      12     121 ..     600     713 ..     590     717 .. 0.74

  Alignments for each domain:
  == domain 1  score: 20.1 bits;  conditional E-value: 1.2e-07
                   T...GGGGGGSSSTTSSEEESSSSTTEEEEEEEEEEEEEEEEEEEECSSTT.SSEEEEEEEEEESSSSSEEEEEE..ECE.EESSSSSSSEEEEEE. CS
  F5_F8_type_C  12 w...paaaaldGnkntaWsssssddkqwlqvdLgkpkkidgvvtqgrqdgg.nayvksykiqvsddgetWttvkd..ekv.pgnsdnstpvtntfd. 100
                   +   +a+ a+d + +++W s + +d + l++dLg  + i+++++++r  ++      s k+    d  +W+   +    + p  +  s++ +  ++ 
    KOO24195.1 600 GvrhGARLATDADASSYWLSVGRND-SLLTIDLGMDTVIRALTFTWRYPAStVLVLVSDKVTGNADA-DWEIAGAtyG-SaPSRMSLSETAVAGVSr 693
                   2444999************999998.********************976655556666666666665.9*55544432.257777767778888887 PP

                   EEEEEEEEEEEEEEEESSSSS CS
  F5_F8_type_C 101 ppvkaryvrltptswnggngi 121
                   p vkar +r+++t +++ +++
    KOO24195.1 694 PYVKARRLRIYLTGAAD-AAW 713
                   99***********9444.345 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1637 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       477  (0.0266049); expected 358.6 (0.02)
Passed bias filter:                      377  (0.0210274); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.84u 0.26s 00:00:01.10 Elapsed: 00:00:00.41
# Mc/sec: 11884.78
//
Query:       KOO24196.1  [L=242]
Description: hypothetical protein Ctob_003009 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.52   10.2   3.1       0.21   11.5   0.5    1.7  2  MarR_2    MarR family


Domain annotation for each model (and alignments):
>> MarR_2  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.1      0.29   5.2e+03      50      62 .]     104     116 ..     103     116 .. 0.82
   2 ?   11.5   0.5   1.2e-05      0.21      27      56 ..     135     164 ..     135     168 .. 0.93

  Alignments for each domain:
  == domain 1  score: -2.6 bits;  conditional E-value: 0.29
                 SEEEEESSSSSSS CS
      MarR_2  50 LverrpgpeDkRa 62 
                 +v+r+ g ++kR+
  KOO24196.1 104 FVRRSNGRGAKRG 116
                 6899988889996 PP

  == domain 2  score: 11.5 bits;  conditional E-value: 1.2e-05
                 HHHHHTSSHHHHHHHHHHHHHTTSEEEEES CS
      MarR_2  27 larrlglsksavsrilkrLvaaGLverrpg 56 
                 l+rr +++k +++r+ + L+a+ ++++rp 
  KOO24196.1 135 LCRRRRHKKTSATRTSATLQARAHIRERPT 164
                 89**************************86 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (242 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       416  (0.0232026); expected 358.6 (0.02)
Passed bias filter:                      216  (0.0120475); expected 358.6 (0.02)
Passed Vit filter:                        11  (0.000613531); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.22s 00:00:00.60 Elapsed: 00:00:00.36
# Mc/sec: 2014.78
//
Query:       KOO24197.1  [L=309]
Description: hypothetical protein Ctob_003008 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    0.00058   20.8   0.2      0.001   20.1   0.2    1.3  1  CS        CS domain
  ------ inclusion threshold ------
       0.13   11.9   0.0       0.13   11.9   0.0    1.9  2  DUF995    Protein of unknown function (DUF995)


Domain annotation for each model (and alignments):
>> CS  CS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.1   0.2   1.1e-07     0.001       8      76 .]     201     273 ..     195     273 .. 0.80

  Alignments for each domain:
  == domain 1  score: 20.1 bits;  conditional E-value: 1.1e-07
                 ETTEEEEEEE-TTC.TTTTTCEEEEEETTE..EEEEE.TS.CEEEEECE..BSS-BETTTEEEEEETTEEEEEEEB CS
          CS   8 tldeVvvtiyvkkv.nikkkdvkvefkers..lkvki.gk.eklliege..LfgpIdpeesswtieskkveitLkK 76 
                 +++e++v++++ ++ +  +  ++v+f  rs  l+v   +k  +l       L+++Id e++ ++ ++ k+ ++L K
  KOO24197.1 201 DEKEIKVQVPLAGAgTLAEGAISVDFRIRSfdLRVVHeNKeLRLH---VplLCQEIDQEKCVVKKKTGKLIVVLHK 273
                 5789**********8888889999999999445555444444444...256**********************998 PP

>> DUF995  Protein of unknown function (DUF995)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   1.3      0.37   3.3e+03      13      26 ..      97     110 ..      85     134 .. 0.55
   2 ?   11.9   0.0   1.5e-05      0.13      94     135 ..     255     298 ..     250     301 .. 0.89

  Alignments for each domain:
  == domain 1  score: -2.3 bits;  conditional E-value: 0.37
      DUF995  13 eaakkaakarplta 26 
                 ++a+ aa arpl a
  KOO24197.1  97 AKAASAALARPLAA 110
                 22233444444433 PP

  == domain 2  score: 11.9 bits;  conditional E-value: 1.5e-05
      DUF995  94 aktCfsHrekgg..viyqkrepdgeWyvFrhapvkkddevrklk 135
                 ++ C+  +++g+  v+ +k++p+  Wy  r+++   d e++kl+
  KOO24197.1 255 QEKCVVKKKTGKliVVLHKKDPEQPWYELRKTKGVGDSEYNKLV 298
                 56799999999988899*************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (309 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       749  (0.0417759); expected 358.6 (0.02)
Passed bias filter:                      423  (0.0235931); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.39u 0.24s 00:00:00.63 Elapsed: 00:00:00.36
# Mc/sec: 2549.74
//
Query:       KOO24198.1  [L=726]
Description: zinc finger mynd domain-containing protein 15-like protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.7e-07   30.1   8.7    3.7e-07   30.1   8.7    1.7  2  zf-MYND   MYND finger
  ------ inclusion threshold ------
       0.21   12.5   4.1        2.2    9.4   0.2    3.6  2  TPR_14    Tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> zf-MYND  MYND finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.1   8.7   4.1e-11   3.7e-07       1      34 [.     384     418 ..     384     420 .. 0.89
   2 ?   -3.6   0.5       1.4   1.2e+04      15      22 ..     461     467 ..     460     468 .. 0.76

  Alignments for each domain:
  == domain 1  score: 30.1 bits;  conditional E-value: 4.1e-11
                 -TTT--.B-SC.E-TTTS-SEESSHHHHHHCHHHH CS
     zf-MYND   1 CavCgkaealk.kCagCksvfYCskeCqradwksH 34 
                 CavCgka +    C++C+ + YCs++Cq +d  +H
  KOO24198.1 384 CAVCGKATPSAmVCGRCECISYCSAACQAQDALKH 418
                 ******555546*******************9888 PP

  == domain 2  score: -3.6 bits;  conditional E-value: 1.4
                 TTS-SEES CS
     zf-MYND  15 gCksvfYC 22 
                 +C  v YC
  KOO24198.1 461 RC-EVSYC 467
                 67.78999 PP

>> TPR_14  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   0.2   0.00024       2.2       1      33 [.     137     169 ..     137     171 .. 0.93
   2 ?    2.2   0.5     0.048   4.3e+02       4      29 ..     174     199 ..     173     220 .. 0.84

  Alignments for each domain:
  == domain 1  score: 9.4 bits;  conditional E-value: 0.00024
      TPR_14   1 peallalaeallalGdpdeAiallrralalaPd 33 
                 p+++++la++ l++Gd  +A+ + +r  a +P+
  KOO24198.1 137 PDVWAQLARYQLERGDETAALVAMERGTANNPG 169
                 689************************999995 PP

  == domain 2  score: 2.2 bits;  conditional E-value: 0.048
      TPR_14   4 llalaeallalGdpdeAiallrrala 29 
                 l++ ae+l++ ++p+e ++++ +al+
  KOO24198.1 174 LWQQAELLERVRRPEERRDMALAALE 199
                 57899*************99999997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (726 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       605  (0.0337442); expected 358.6 (0.02)
Passed bias filter:                      309  (0.0172346); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.62u 0.31s 00:00:00.93 Elapsed: 00:00:00.47
# Mc/sec: 4651.50
//
Query:       KOO24199.1  [L=605]
Description: ascorbate peroxidase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.1e-35  123.4   0.0    2.2e-35  122.4   0.0    1.5  1  peroxidase     Peroxidase
    1.3e-19   70.8   0.0    2.4e-19   70.0   0.0    1.5  1  NAD_binding_1  Oxidoreductase NAD-binding domain
    4.1e-11   43.1   0.0    6.9e-11   42.4   0.0    1.3  1  FAD_binding_6  Oxidoreductase FAD-binding domain


Domain annotation for each model (and alignments):
>> peroxidase  Peroxidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  122.4   0.0   3.7e-39   2.2e-35       3     229 .]      61     301 ..      59     301 .. 0.85

  Alignments for each domain:
  == domain 1  score: 122.4 bits;  conditional E-value: 3.7e-39
                 HHHHHCCCCTTTHCHHHHHHHHHHHTT.......SSTTSCHHH.TCCHHCSGGGT.TTHHHHHHHHHHHHHCTT.....S-HHHHHHHHHHHHHHCTT- CS
  peroxidase   3 afvkaalkadrdmgpsllrlafhdcfv.......gGcdgsvll.lepektapaNa.slrkgldvldaikakleaacpgvvScADlialaardavelagg 92 
                 a+v+ ++++  ++gp +++laf d+++       gG +++  +   +e   p Na   ++++ +l++ika++++     +S ADl+a aa++a+e++gg
  KOO24199.1  61 ADVRGLIER-EKCGPVFVQLAFADAATysaalggGGPNAALRFaDRGEGAFPCNAfLAKRAVPLLEPIKAQYPN-----ISRADLWAHAANVAIEALGG 153
                 566666666.89*********************88999886446788888999**54448*************9.....******************** PP

                 -..--EE---S-SSGGG.S-S.....-..........-.TS-HHHHHHHHHHHT--HHHHHHHHGGGGC-EESHH...........SS-GGGT....HH CS
  peroxidase  93 plvpvslGRrDatessa.sev..snlP.........dp.tasvdelrdkfarkgltdeelvaLsGaHtiGkahcssfsrlyaaadpaldaayaaekCas 178
                 p++  ++GRrDa +s   + +    lP         +p ++ +d+lr  f+rkg+td+e+vaL G Ht+G+ +          +               
  KOO24199.1 154 PSILSRFGRRDAATSADsVPSaaGRLPddlasgaeaSPsEHMADHLRVIFHRKGFTDREIVALCGRHTLGEYEP---------P--------------- 228
                 *88***********9996665433444555556665443899999****************************2.........2............... PP

                 S..........EETS-STHHHHHHCC....................T-EEEHHHHHHHHSCCCHHHHHHCCC- CS
  peroxidase 179 gnte..lvdldtptkfdnsyfknlle....................krgllrsDqvllsdsetralvekyaes 229
                 +++      ++ p++fdnsy+++ll+                    + ++l++D +ll+d+++r ++ekya++
  KOO24199.1 229 NGAPggGPWTEHPNRFDNSYYVELLSkkyepsacgsagvllrssdgSTIMLPTDHALLRDPKLRVYAEKYASD 301
                 2222222334589*********************************************************986 PP

>> NAD_binding_1  Oxidoreductase NAD-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.0   0.0   4.1e-23   2.4e-19       1     107 [.     460     577 ..     460     579 .. 0.91

  Alignments for each domain:
  == domain 1  score: 70.0 bits;  conditional E-value: 4.1e-23
                    EEEEGGGGHHHHHHHHHHHHHCTTCSEEEEEEEESSGCGSTTHHHHHHHHHHCTTEEEEEEE.....ESSCTTTSSSEESSHHHHHHHHHHH.... CS
  NAD_binding_1   1 miagGtGiaPvrsvlraileeakdktkvvlvyGnrteedllyreeleelakklpgrlkvvav.....vsreeagweggkgrvqdalleells.... 87 
                    m+agG G+aP++++l+++l  + d++k+vl+y  rt++d+l+r el+e+a++lp+rl+vv+v        +++gw+    +v ++   + ++    
     KOO24199.1 460 MLAGGMGLAPMYQILWKMLFIPADERKAVLIYHSRTTADILLRRELDEWARALPHRLTVVHVvgdapDAAPPEGWKTTDTYVAESGEVDKAKlsky 555
                    9***************************************************************99988999999999888887765555555677 PP

                    ..HSSTTEEEEEECSHHHHHHH CS
  NAD_binding_1  88 ..lkkeethvyvCGppgMikav 107
                       +++et+ ++CGpp++ +a 
     KOO24199.1 556 afAPSKETLCFICGPPALYTAL 577
                    7799************998876 PP

>> FAD_binding_6  Oxidoreductase FAD-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.4   0.0   1.2e-14   6.9e-11       2      93 ..     346     442 ..     345     446 .. 0.93

  Alignments for each domain:
  == domain 1  score: 42.4 bits;  conditional E-value: 1.2e-14
                    EEEEEEEECCTTEEEEEEEESTTTS-----TT-EEEEEEC...ETTCCEEEEEE.BSSTTECCEEEEEEE--..TT-HHHHHHHCS-TT-EEEEEE CS
  FAD_binding_6   2 lkltekeevsedtrifrfklpsekqklglpvGqhvflrlk...ikgeaviRsYtpissenekGelellvkvy..pgGkmsqaLdelkigdtleikG 92 
                    l+l ++++ ++dt+++ f lp+++q+l+lp+   + +r++    +g++ +R+Y p+s++  +G++el+v++   p  ++   L+el+ig++++++ 
     KOO24199.1 346 LPLRTRRDHTHDTAVYGFGLPEPTQTLRLPACACLLVRAPargKEGRDAMRAYFPTSDPGLQGTFELMVRRGsePPDEVAAWLHELPIGSKVAFRH 441
                    578889999*******************************66666889**********************99888899***************998 PP

                    E CS
  FAD_binding_6  93 P 93 
                    P
     KOO24199.1 442 P 442
                    8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (605 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       263  (0.014669); expected 358.6 (0.02)
Passed bias filter:                      238  (0.0132746); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.49u 0.23s 00:00:00.72 Elapsed: 00:00:00.38
# Mc/sec: 4725.82
//
Query:       KOO24200.1  [L=1028]
Description: calcium-dependent protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
      3e-39  129.6  12.6    3.2e-05   23.2   0.1    7.8  7  EF-hand_1       EF hand
    2.1e-31  108.1  11.9    6.2e-10   39.4   0.3    4.9  4  EF-hand_7       EF-hand domain pair
    7.6e-31  103.4  24.2     0.0011   18.7   0.1    8.8  9  EF-hand_6       EF-hand domain
    1.2e-24   85.9  16.4    9.7e-08   31.7   0.3    6.4  7  EF-hand_8       EF-hand domain pair
    3.4e-24   83.2  10.2     0.0057   16.1   0.1    7.4  7  EF-hand_5       EF hand
    1.6e-08   34.4   4.1       0.33   10.9   0.1    5.6  6  EF-hand_4       Cytoskeletal-regulatory complex EF hand
    6.1e-08   32.9   0.9     0.0069   16.7   0.1    4.3  4  EF-hand_9       EF-hand domain
    2.7e-05   23.9   5.5      0.016   15.1   0.1    4.9  5  EF-hand_10      EF hand
     0.0012   19.1   3.6       0.17   12.0   0.2    3.7  4  p25-alpha       p25-alpha
  ------ inclusion threshold ------
      0.018   15.6   0.6       0.53   10.9   0.1    2.6  2  CopG_antitoxin  CopG antitoxin of type II toxin-antitoxin sys
      0.031   15.1   0.8        7.4    7.5   0.0    3.2  3  EF-hand_11      EF-hand domain
      0.041   14.2   0.9        5.9    7.2   0.0    3.4  3  SPARC_Ca_bdg    Secreted protein acidic and rich in cysteine 
      0.075   11.6   0.0          1    7.9   0.0    2.2  2  DUF5580         Family of unknown function (DUF5580)


Domain annotation for each model (and alignments):
>> EF-hand_1  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.2   0.0     9e-07    0.0012       4      28 ..     138     162 ..     135     163 .. 0.92
   2 !   15.8   0.0   5.1e-06    0.0071       4      23 ..     174     193 ..     171     194 .. 0.90
   3 !   18.5   0.0     7e-07   0.00097       3      28 ..     262     287 ..     262     288 .. 0.94
   4 !   23.2   0.1   2.3e-08   3.2e-05       2      27 ..     415     440 ..     414     442 .. 0.94
   5 !   19.6   0.1   3.1e-07   0.00043       2      28 ..     451     477 ..     450     478 .. 0.91
   6 !   17.7   0.0   1.3e-06    0.0017       1      28 [.     536     563 ..     536     564 .. 0.93
   7 !   18.1   0.4   9.4e-07    0.0013       3      27 ..     575     599 ..     573     601 .. 0.91

  Alignments for each domain:
  == domain 1  score: 18.2 bits;  conditional E-value: 9e-07
                 HHHHHHTTTSSSEEEHHHHHHHHHH CS
   EF-hand_1   4 eiFrefDkDgdGkIdfeEfkellkk 28 
                  +Fre D D++G+ +f Ef++++++
  KOO24200.1 138 TVFREHDHDKSGTFEFPEFRDAMRS 162
                 58*********************97 PP

  == domain 2  score: 15.8 bits;  conditional E-value: 5.1e-06
                 HHHHHHTTTSSSEEEHHHHH CS
   EF-hand_1   4 eiFrefDkDgdGkIdfeEfk 23 
                  +Fr +D Dg+G ++f+Ef+
  KOO24200.1 174 ALFRAADADGSGCLEFSEFI 193
                 68*****************7 PP

  == domain 3  score: 18.5 bits;  conditional E-value: 7e-07
                 HHHHHHHTTTSSSEEEHHHHHHHHHH CS
   EF-hand_1   3 keiFrefDkDgdGkIdfeEfkellkk 28 
                 k +F  fD +++G++++ Ef+ ++k+
  KOO24200.1 262 KAVFHRFDENRSGRLSIPEFVLAMKH 287
                 579*********************97 PP

  == domain 4  score: 23.2 bits;  conditional E-value: 2.3e-08
                 HHHHHHHHTTTSSSEEEHHHHHHHHH CS
   EF-hand_1   2 lkeiFrefDkDgdGkIdfeEfkellk 27 
                 l++ F+efD D++G+ ++ Efke+++
  KOO24200.1 415 LRKTFQEFDADKSGTFELAEFKEAMR 440
                 799**********************8 PP

  == domain 5  score: 19.6 bits;  conditional E-value: 3.1e-07
                 HHHHHHHHTTTSSSEEEHHHHHHHHHH CS
   EF-hand_1   2 lkeiFrefDkDgdGkIdfeEfkellkk 28 
                 ++ +F+ +D D +G++df+Ef+  lkk
  KOO24200.1 451 VETLFKAADADSSGQVDFSEFMGTLKK 477
                 6789******************99987 PP

  == domain 6  score: 17.7 bits;  conditional E-value: 1.3e-06
                 HHHHHHHHHTTTSSSEEEHHHHHHHHHH CS
   EF-hand_1   1 elkeiFrefDkDgdGkIdfeEfkellkk 28 
                 +l++ Fr +D Dg+Gk d+ E+ ++l++
  KOO24200.1 536 DLRRCFRAIDEDGSGKCDRVELSQMLNA 563
                 5899*********************987 PP

  == domain 7  score: 18.1 bits;  conditional E-value: 9.4e-07
                 HHHHHHHTTTSSSEEEHHHHHHHHH CS
   EF-hand_1   3 keiFrefDkDgdGkIdfeEfkellk 27 
                  ++++++D Dg+G I f+Ef ++++
  KOO24200.1 575 HRMIDLMDYDGSGDIQFDEFARVFA 599
                 68******************99986 PP

>> EF-hand_7  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.7   0.6   2.6e-11   3.6e-08       4      68 ..     136     194 ..     133     197 .. 0.95
   2 !   11.7   0.0   0.00019      0.27      47      70 ..     262     285 ..     231     286 .. 0.80
   3 !   39.4   0.3   4.5e-13   6.2e-10       4      67 ..     415     472 ..     414     476 .. 0.95
   4 !   27.6   0.5   2.1e-09   2.9e-06       3      69 ..     536     597 ..     534     599 .. 0.89

  Alignments for each domain:
  == domain 1  score: 33.7 bits;  conditional E-value: 2.6e-11
   EF-hand_7   4 lkeaFkelDtdgdgyldkeellrllrkifqgagegsklsdeelellfkefDtdkdGvisfdEFlk 68 
                 l ++F+e+D d++g  +  e+++++r      + + +l+++ + +lf+  D d++G++ f+EF +
  KOO24200.1 136 LLTVFREHDHDKSGTFEFPEFRDAMR------SVNLDLTEKDMVALFRAADADGSGCLEFSEFIN 194
                 7799**********************......9******************************86 PP

  == domain 2  score: 11.7 bits;  conditional E-value: 0.00019
   EF-hand_7  47 ellfkefDtdkdGvisfdEFlkly 70 
                 +++f+ fD +++G++s  EF+ ++
  KOO24200.1 262 KAVFHRFDENRSGRLSIPEFVLAM 285
                 589*****************9877 PP

  == domain 3  score: 39.4 bits;  conditional E-value: 4.5e-13
   EF-hand_7   4 lkeaFkelDtdgdgyldkeellrllrkifqgagegsklsdeelellfkefDtdkdGvisfdEFl 67 
                 l+  F+e+D d++g  + +e+++++r        +  ++++ +e+lfk  D d++G+++f+EF+
  KOO24200.1 415 LRKTFQEFDADKSGTFELAEFKEAMR------VVDRTMPETDVETLFKAADADSSGQVDFSEFM 472
                 6778**********************......9999999999*********************7 PP

  == domain 4  score: 27.6 bits;  conditional E-value: 2.1e-09
   EF-hand_7   3 klkeaFkelDtdgdgyldkeellrllrkifqgagegsklsdeelellfkefDtdkdGvisfdEFlkl 69 
                 +l+++F+++D dg+g+ d+ el ++l ++f     + +++++++ ++++ +D d++G i fdEF + 
  KOO24200.1 536 DLRRCFRAIDEDGSGKCDRVELSQMLNAMF-----NLNVPEKAMHRMIDLMDYDGSGDIQFDEFARV 597
                 689************************955.....55556778999******************876 PP

>> EF-hand_6  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.1   0.1      0.77   1.1e+03       2      11 ..     124     133 ..     123     134 .. 0.89
   2 !   18.7   0.1   7.8e-07    0.0011       3      29 ..     137     162 ..     135     166 .. 0.90
   3 !   15.6   0.1   7.7e-06     0.011       2      28 ..     172     198 ..     171     206 .. 0.89
   4 !   16.6   0.0   3.8e-06    0.0053       4      28 ..     263     287 ..     262     294 .. 0.91
   5 ?   -2.1   0.1       3.7   5.1e+03       2      10 ..     403     411 ..     402     412 .. 0.88
   6 !   18.4   0.1     1e-06    0.0014       2      27 ..     415     440 ..     414     443 .. 0.93
   7 !   14.7   0.1   1.6e-05     0.022       3      28 ..     452     477 ..     450     483 .. 0.88
   8 !   18.0   0.0   1.4e-06    0.0019       1      27 [.     536     562 ..     536     566 .. 0.93
   9 !   11.3   0.2   0.00019      0.26       5      26 ..     577     598 ..     573     602 .. 0.85

  Alignments for each domain:
  == domain 1  score: 0.1 bits;  conditional E-value: 0.77
   EF-hand_6   2 lreaFklfDk 11 
                 +re+F+++D 
  KOO24200.1 124 MREFFQKHDL 133
                 89*******5 PP

  == domain 2  score: 18.7 bits;  conditional E-value: 7.8e-07
   EF-hand_6   3 reaFklfDkdgdGkidaeElrkalrka 29 
                   +F+++D+d++G+  + E+r+a+r +
  KOO24200.1 137 LTVFREHDHDKSGTFEFPEFRDAMR-S 162
                 579*********************9.4 PP

  == domain 3  score: 15.6 bits;  conditional E-value: 7.7e-06
   EF-hand_6   2 lreaFklfDkdgdGkidaeElrkalrk 28 
                 + ++F++ D dg+G++ ++E+++ +rk
  KOO24200.1 172 MVALFRAADADGSGCLEFSEFINNFRK 198
                 7899******************99985 PP

  == domain 4  score: 16.6 bits;  conditional E-value: 3.8e-06
   EF-hand_6   4 eaFklfDkdgdGkidaeElrkalrk 28 
                 ++F+ fD +++G +++ E++ a+++
  KOO24200.1 263 AVFHRFDENRSGRLSIPEFVLAMKH 287
                 79*********************94 PP

  == domain 5  score: -2.1 bits;  conditional E-value: 3.7
   EF-hand_6   2 lreaFklfD 10 
                 +r++Fk +D
  KOO24200.1 403 MRKLFKDHD 411
                 899***999 PP

  == domain 6  score: 18.4 bits;  conditional E-value: 1e-06
   EF-hand_6   2 lreaFklfDkdgdGkidaeElrkalr 27 
                 lr+ F++fD d++G+   +E++ a+r
  KOO24200.1 415 LRKTFQEFDADKSGTFELAEFKEAMR 440
                 899**********************9 PP

  == domain 7  score: 14.7 bits;  conditional E-value: 1.6e-05
   EF-hand_6   3 reaFklfDkdgdGkidaeElrkalrk 28 
                 + +Fk+ D d +G++d++E++  l+k
  KOO24200.1 452 ETLFKAADADSSGQVDFSEFMGTLKK 477
                 679******************99985 PP

  == domain 8  score: 18.0 bits;  conditional E-value: 1.4e-06
   EF-hand_6   1 elreaFklfDkdgdGkidaeElrkalr 27 
                 +lr+ F+++D dg+Gk d+ El ++l+
  KOO24200.1 536 DLRRCFRAIDEDGSGKCDRVELSQMLN 562
                 589**********************98 PP

  == domain 9  score: 11.3 bits;  conditional E-value: 0.00019
   EF-hand_6   5 aFklfDkdgdGkidaeElrkal 26 
                   +l+D+dg+G i ++E+ +++
  KOO24200.1 577 MIDLMDYDGSGDIQFDEFARVF 598
                 5589**************9987 PP

>> EF-hand_8  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.7   0.0    0.0093        13      30      52 ..     138     160 ..     134     161 .. 0.91
   2 !   29.5   0.4   3.5e-10   4.9e-07       3      52 ..     149     196 ..     147     199 .. 0.89
   3 !    8.5   0.0    0.0013       1.7      31      54 ..     264     287 ..     241     288 .. 0.87
   4 ?    5.0   0.1     0.016        23      32      52 ..     419     439 ..     418     440 .. 0.92
   5 !   31.7   0.3   7.1e-11   9.7e-08       3      53 ..     428     476 ..     426     477 .. 0.89
   6 ?    2.6   0.1     0.088   1.2e+02      32      47 ..     541     556 ..     537     562 .. 0.80
   7 !   21.5   0.6   1.1e-07   0.00016       3      52 ..     550     598 ..     548     601 .. 0.91

  Alignments for each domain:
  == domain 1  score: 5.7 bits;  conditional E-value: 0.0093
   EF-hand_8  30 ilfrefDtdgdGkisfeEFcvll 52 
                 ++fre+D d++G+  f EF + +
  KOO24200.1 138 TVFREHDHDKSGTFEFPEFRDAM 160
                 58*****************9987 PP

  == domain 2  score: 29.5 bits;  conditional E-value: 3.5e-10
   EF-hand_8   3 gkItreelrrilrilglkkglseeevdilfrefDtdgdGkisfeEFcvll 52 
                 g   + e+r+++r++ l   l+e+++ +lfr++D dg+G + f EF++ +
  KOO24200.1 149 GTFEFPEFRDAMRSVNLD--LTEKDMVALFRAADADGSGCLEFSEFINNF 196
                 5666779*****999999..**************************9855 PP

  == domain 3  score: 8.5 bits;  conditional E-value: 0.0013
   EF-hand_8  31 lfrefDtdgdGkisfeEFcvller 54 
                 +f +fD++++G++s  EF+  +++
  KOO24200.1 264 VFHRFDENRSGRLSIPEFVLAMKH 287
                 6889**************999887 PP

  == domain 4  score: 5.0 bits;  conditional E-value: 0.016
   EF-hand_8  32 frefDtdgdGkisfeEFcvll 52 
                 f efD d++G+  + EF + +
  KOO24200.1 419 FQEFDADKSGTFELAEFKEAM 439
                 89***************9887 PP

  == domain 5  score: 31.7 bits;  conditional E-value: 7.1e-11
   EF-hand_8   3 gkItreelrrilrilglkkglseeevdilfrefDtdgdGkisfeEFcvlle 53 
                 g    +e+++++r++     + e +v++lf+++D d +G ++f EF+  l+
  KOO24200.1 428 GTFELAEFKEAMRVVDRT--MPETDVETLFKAADADSSGQVDFSEFMGTLK 476
                 666779*******99666..***************************8665 PP

  == domain 6  score: 2.6 bits;  conditional E-value: 0.088
   EF-hand_8  32 frefDtdgdGkisfeE 47 
                 fr++D+dg+Gk +  E
  KOO24200.1 541 FRAIDEDGSGKCDRVE 556
                 9*********966655 PP

  == domain 7  score: 21.5 bits;  conditional E-value: 1.1e-07
   EF-hand_8   3 gkItreelrril.rilglkkglseeevdilfrefDtdgdGkisfeEFcvll 52 
                 gk +r el+ +l +++ l+  + e++++ +++++D dg+G i f+EF  ++
  KOO24200.1 550 GKCDRVELSQMLnAMFNLN--VPEKAMHRMIDLMDYDGSGDIQFDEFARVF 598
                 6668889*****9999***..**************************9877 PP

>> EF-hand_5  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.0   0.0       0.5   6.9e+02       4      22 ..     139     157 ..     136     160 .. 0.83
   2 !   13.2   0.0   3.4e-05     0.047       2      22 ..     173     193 ..     172     196 .. 0.89
   3 !   15.2   0.0   8.1e-06     0.011       2      21 ..     262     281 ..     262     286 .. 0.91
   4 !   14.0   0.2   1.9e-05     0.026       1      23 [.     415     437 ..     415     439 .. 0.89
   5 !   16.1   0.1   4.1e-06    0.0057       3      22 ..     453     472 ..     451     476 .. 0.88
   6 !   12.4   0.0     6e-05     0.083       1      24 [.     537     560 ..     537     561 .. 0.87
   7 !   11.2   0.1   0.00015       0.2       6      24 ..     579     597 ..     575     599 .. 0.88

  Alignments for each domain:
  == domain 1  score: 0.0 bits;  conditional E-value: 0.5
                 HHHHH-SS-SSCE-HHHHH CS
   EF-hand_5   4 tFqaiDlNgDGkIskeELk 22 
                 +F++ D +++G+  + E++
  KOO24200.1 139 VFREHDHDKSGTFEFPEFR 157
                 79999******98888887 PP

  == domain 2  score: 13.2 bits;  conditional E-value: 3.4e-05
                 HHHHHHH-SS-SSCE-HHHHH CS
   EF-hand_5   2 kdtFqaiDlNgDGkIskeELk 22 
                 +++F+a+D++g+G + ++E+ 
  KOO24200.1 173 VALFRAADADGSGCLEFSEFI 193
                 789****************95 PP

  == domain 3  score: 15.2 bits;  conditional E-value: 8.1e-06
                 HHHHHHH-SS-SSCE-HHHH CS
   EF-hand_5   2 kdtFqaiDlNgDGkIskeEL 21 
                 k++F ++D N++G++s+ E+
  KOO24200.1 262 KAVFHRFDENRSGRLSIPEF 281
                 579****************9 PP

  == domain 4  score: 14.0 bits;  conditional E-value: 1.9e-05
                 HHHHHHHH-SS-SSCE-HHHHHH CS
   EF-hand_5   1 lkdtFqaiDlNgDGkIskeELkt 23 
                 l++tFq++D++++G+    E+k+
  KOO24200.1 415 LRKTFQEFDADKSGTFELAEFKE 437
                 789***********999999987 PP

  == domain 5  score: 16.1 bits;  conditional E-value: 4.1e-06
                 HHHHHH-SS-SSCE-HHHHH CS
   EF-hand_5   3 dtFqaiDlNgDGkIskeELk 22 
                  +F+a+D++ +G+++++E++
  KOO24200.1 453 TLFKAADADSSGQVDFSEFM 472
                 58*****************5 PP

  == domain 6  score: 12.4 bits;  conditional E-value: 6e-05
                 HHHHHHHH-SS-SSCE-HHHHHHH CS
   EF-hand_5   1 lkdtFqaiDlNgDGkIskeELktl 24 
                 l+ +F+aiD +g+Gk ++ EL ++
  KOO24200.1 537 LRRCFRAIDEDGSGKCDRVELSQM 560
                 5779***********999999886 PP

  == domain 7  score: 11.2 bits;  conditional E-value: 0.00015
                 HHH-SS-SSCE-HHHHHHH CS
   EF-hand_5   6 qaiDlNgDGkIskeELktl 24 
                 + +D +g+G I ++E+ ++
  KOO24200.1 579 DLMDYDGSGDIQFDEFARV 597
                 679*************985 PP

>> EF-hand_4  Cytoskeletal-regulatory complex EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.7   0.0     0.021        29      42      78 ..     133     170 ..     105     175 .. 0.71
   2 ?    4.7   0.1     0.021        29      39      67 ..     166     194 ..     163     198 .. 0.86
   3 ?   -0.6   0.0       0.9   1.2e+03      46      71 ..     262     287 ..     244     313 .. 0.73
   4 ?    2.3   0.0      0.12   1.6e+02      45      72 ..     415     442 ..     402     446 .. 0.88
   5 !   10.9   0.1   0.00024      0.33      13      71 ..     419     477 ..     414     489 .. 0.79
   6 !   10.0   0.0   0.00045      0.62      25      67 ..     554     596 ..     540     618 .. 0.86

  Alignments for each domain:
  == domain 1  score: 4.7 bits;  conditional E-value: 0.021
   EF-hand_4  42 edklekiwdladidedgkldfeefciamrli.fdlvng 78 
                  + l  ++   d d+ g+++f ef  amr + +dl ++
  KOO24200.1 133 LHALLTVFREHDHDKSGTFEFPEFRDAMRSVnLDLTEK 170
                 34677889999*****************9552677665 PP

  == domain 2  score: 4.7 bits;  conditional E-value: 0.021
   EF-hand_4  39 kleedklekiwdladidedgkldfeefci 67 
                  l+e+ +  ++  ad d  g+l+f ef+ 
  KOO24200.1 166 DLTEKDMVALFRAADADGSGCLEFSEFIN 194
                 67888899999****************85 PP

  == domain 3  score: -0.6 bits;  conditional E-value: 0.9
   EF-hand_4  46 ekiwdladidedgkldfeefciamrl 71 
                 + +++  d +  g+l   ef++am+ 
  KOO24200.1 262 KAVFHRFDENRSGRLSIPEFVLAMKH 287
                 5666677788899***********85 PP

  == domain 4  score: 2.3 bits;  conditional E-value: 0.12
   EF-hand_4  45 lekiwdladidedgkldfeefciamrli 72 
                 l k ++  d d+ g++++ ef  amr++
  KOO24200.1 415 LRKTFQEFDADKSGTFELAEFKEAMRVV 442
                 778888899*****************97 PP

  == domain 5  score: 10.9 bits;  conditional E-value: 0.00024
   EF-hand_4  13 weifsglkpednkltgdkvapvlknskleedklekiwdladidedgkldfeefciamrl 71 
                 ++ f + k+   +l++ k a  + +  ++e  +e +++ ad d+ g++df ef+ +++ 
  KOO24200.1 419 FQEFDADKSGTFELAEFKEAMRVVDRTMPETDVETLFKAADADSSGQVDFSEFMGTLKK 477
                 55566666666667776777777778899999*********************988775 PP

  == domain 6  score: 10.0 bits;  conditional E-value: 0.00045
   EF-hand_4  25 kltgdkvapvlknskleedklekiwdladidedgkldfeefci 67 
                 ++  +++ + + n +++e+ ++++ dl d d  g++ f+ef+ 
  KOO24200.1 554 RVELSQMLNAMFNLNVPEKAMHRMIDLMDYDGSGDIQFDEFAR 596
                 56667888889999***************************84 PP

>> EF-hand_9  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.0   0.0     0.093   1.3e+02       2      60 ..     138     194 ..     137     199 .. 0.91
   2 ?    2.9   0.0     0.099   1.4e+02       2      39 ..     263     299 ..     262     305 .. 0.85
   3 !   16.7   0.1     5e-06    0.0069       3      62 ..     418     475 ..     416     478 .. 0.92
   4 ?    5.4   0.0     0.016        22       3      62 ..     540     598 ..     538     601 .. 0.93

  Alignments for each domain:
  == domain 1  score: 3.0 bits;  conditional E-value: 0.093
   EF-hand_9   2 tvFevcDtqktGrVpvsrlidyLravtaqdpeeseLeelakelDPdgedasvdldtflr 60 
                 tvF+  D +k G+    +  d +r v   d +e ++  l + +D dg  + ++++ f  
  KOO24200.1 138 TVFREHDHDKSGTFEFPEFRDAMRSVNL-DLTEKDMVALFRAADADGS-GCLEFSEFIN 194
                 689999**********************.99****************9.9999999976 PP

  == domain 2  score: 2.9 bits;  conditional E-value: 0.099
   EF-hand_9   2 tvFevcDtqktGrVpvsrlidyLravtaqdpeeseLee 39 
                 +vF+ +D ++ Gr  + + +  +++ +  d +e++ ee
  KOO24200.1 263 AVFHRFDENRSGRLSIPEFVLAMKHYGV-DCTEAQAEE 299
                 79**************999999999998.777776665 PP

  == domain 3  score: 16.7 bits;  conditional E-value: 5e-06
   EF-hand_9   3 vFevcDtqktGrVpvsrlidyLravtaqdpeeseLeelakelDPdgedasvdldtflrvm 62 
                 +F+ +D +k G+  +++ ++ +r v   + +e ++e+l k +D d   ++vd++ f   +
  KOO24200.1 418 TFQEFDADKSGTFELAEFKEAMRVVDR-TMPETDVETLFKAADADSS-GQVDFSEFMGTL 475
                 7************************99.7789**************9.*******98665 PP

  == domain 4  score: 5.4 bits;  conditional E-value: 0.016
   EF-hand_9   3 vFevcDtqktGrVpvsrlidyLravtaqdpeeseLeelakelDPdgedasvdldtflrvm 62 
                  F++ D +  G+    +l ++L a+ + + +e ++     ++D dg  + +++d f rv 
  KOO24200.1 540 CFRAIDEDGSGKCDRVELSQMLNAMFNLNVPEKAMHRMIDLMDYDGS-GDIQFDEFARVF 598
                 699*********9999999*****999999*****************.9********996 PP

>> EF-hand_10  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.0   0.0      0.14   1.9e+02      25      43 ..     138     156 ..     132     158 .. 0.90
   2 !   15.1   0.1   1.1e-05     0.016       4      44 ..     153     193 ..     151     199 .. 0.88
   3 ?    1.1   0.0      0.27   3.7e+02      11      44 ..     249     282 ..     243     287 .. 0.81
   4 ?    1.9   0.1      0.15   2.1e+02      25      45 ..     417     437 ..     414     442 .. 0.87
   5 ?    4.6   0.1     0.021        29       5      43 ..     433     471 ..     429     477 .. 0.84

  Alignments for each domain:
  == domain 1  score: 2.0 bits;  conditional E-value: 0.14
  EF-hand_10  25 kLFkkcDkSksgrLegeEi 43 
                 ++F++ D+ ksg+ e  E+
  KOO24200.1 138 TVFREHDHDKSGTFEFPEF 156
                 58*************9997 PP

  == domain 2  score: 15.1 bits;  conditional E-value: 1.1e-05
  EF-hand_10   4 fkEvkrlLreiNievddeYAekLFkkcDkSksgrLegeEie 44 
                 f E ++ +r +N+++ ++    LF+ +D   sg Le +E+ 
  KOO24200.1 153 FPEFRDAMRSVNLDLTEKDMVALFRAADADGSGCLEFSEFI 193
                 7799999*****************************99963 PP

  == domain 3  score: 1.1 bits;  conditional E-value: 0.27
  EF-hand_10  11 LreiNievddeYAekLFkkcDkSksgrLegeEie 44 
                 L  i   vd+   + +F + D+ +sgrL   E++
  KOO24200.1 249 LAIIEKKVDQTGPKAVFHRFDENRSGRLSIPEFV 282
                 5556667888888999************999986 PP

  == domain 4  score: 1.9 bits;  conditional E-value: 0.15
  EF-hand_10  25 kLFkkcDkSksgrLegeEiee 45 
                 k F++ D  ksg+ e  E++e
  KOO24200.1 417 KTFQEFDADKSGTFELAEFKE 437
                 67****************997 PP

  == domain 5  score: 4.6 bits;  conditional E-value: 0.021
  EF-hand_10   5 kEvkrlLreiNievddeYAekLFkkcDkSksgrLegeEi 43 
                  E k+ +r +   + +   e+LFk +D   sg+ + +E+
  KOO24200.1 433 AEFKEAMRVVDRTMPETDVETLFKAADADSSGQVDFSEF 471
                 67777888888888888899*************999997 PP

>> p25-alpha  p25-alpha
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.0         6   8.3e+03      47      72 ..     139     164 ..     137     172 .. 0.84
   2 ?    5.3   0.0     0.015        20      33      83 ..     250     299 ..     241     332 .. 0.81
   3 !   12.0   0.2   0.00012      0.17      32      74 ..     439     481 ..     416     502 .. 0.81
   4 ?   -1.1   0.0       1.4   1.9e+03     108     136 ..     571     599 ..     562     615 .. 0.77

  Alignments for each domain:
  == domain 1  score: -3.2 bits;  conditional E-value: 6
   p25-alpha  47 iFsKvkaksarkitfeqfkealeela 72 
                 +F+ +   ++ + +f +f +a++ + 
  KOO24200.1 139 VFREHDHDKSGTFEFPEFRDAMRSVN 164
                 89999999999*********998775 PP

  == domain 2  score: 5.3 bits;  conditional E-value: 0.015
   p25-alpha  33 kiidkkvtstdvDiiFsKvkaksarkitfeqfkealeelaekkfkkkkkee 83 
                  ii+kkv++t    +F ++ ++ + ++++ +f  a+++   +   +++ ee
  KOO24200.1 250 AIIEKKVDQTGPKAVFHRFDENRSGRLSIPEFVLAMKHYGVD-CTEAQAEE 299
                 5899*********************************99888.32333333 PP

  == domain 3  score: 12.0 bits;  conditional E-value: 0.00012
   p25-alpha  32 ckiidkkvtstdvDiiFsKvkaksarkitfeqfkealeelaek 74 
                   ++d+++ +tdv+++F+   a s+ +++f++f+  l+++ e 
  KOO24200.1 439 MRVVDRTMPETDVETLFKAADADSSGQVDFSEFMGTLKKVEEI 481
                 4699*********************************998776 PP

  == domain 4  score: -1.1 bits;  conditional E-value: 1.4
   p25-alpha 108 agavdrltDtskYTGshkerfDesgkgkg 136
                 ++a+ r+ D   Y Gs   +fDe  ++  
  KOO24200.1 571 EKAMHRMIDLMDYDGSGDIQFDEFARVFA 599
                 57899999999999999999998665555 PP

>> CopG_antitoxin  CopG antitoxin of type II toxin-antitoxin system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.1   0.00039      0.53      13      64 ..     125     182 ..     121     198 .. 0.81
   2 ?    2.2   0.1       0.2   2.7e+02      22      63 ..     420     460 ..     395     475 .. 0.80

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00039
  CopG_antitoxin  13 eeFwekhDlseyl......dlskakkvrfpeLkkktksislrlpedlLealkekAnkr 64 
                     +eF++khDl   l      d +k  + +fpe++  ++s++l l e+ + al  +A + 
      KOO24200.1 125 REFFQKHDLHALLtvfrehDHDKSGTFEFPEFRDAMRSVNLDLTEKDMVALFRAADAD 182
                     799999998655433333388999999******************9999998888775 PP

  == domain 2  score: 2.2 bits;  conditional E-value: 0.2
  CopG_antitoxin  22 seyldlskakkvrfpeLkkktksislrlpedlLealkekAnk 63 
                      e+ d +k  + +++e+k  ++ +   +pe+ +e+l ++A +
      KOO24200.1 420 QEF-DADKSGTFELAEFKEAMRVVDRTMPETDVETLFKAADA 460
                     478.9999****************999999999999888865 PP

>> EF-hand_11  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.5   0.0    0.0054       7.4      18      86 ..     132     200 ..     114     211 .. 0.84
   2 ?    4.5   0.0     0.046        64      12      82 ..     404     475 ..     391     487 .. 0.80
   3 ?   -2.7   0.0       7.9   1.1e+04      57      91 ..     573     607 ..     534     618 .. 0.69

  Alignments for each domain:
  == domain 1  score: 7.5 bits;  conditional E-value: 0.0054
                 SHHHHHHHHHHH-TT-SSEE-HHHHHHHHHHHT--.--HHHHHHHHHTS-B-TTS-EEHHHHHHHHCS-. CS
  EF-hand_11  18 hyhaivqefenfdtlksntvsreefraictrrvqi.ltdeqfdrlwselpvnakgrlkyqdflsklsier 86 
                   ha+   f + d  ks t    efr    r v++ lt++++  l+     +  g l + +f+ ++  e 
  KOO24200.1 132 DLHALLTVFREHDHDKSGTFEFPEFRDAM-RSVNLdLTEKDMVALFRAADADGSGCLEFSEFINNFRKEG 200
                 4699**********************976.5555449****************************99883 PP

  == domain 2  score: 4.5 bits;  conditional E-value: 0.046
                 HHHHHHS.HHHHHHHHHHH-TT-SSEE-HHHHHHHHHHHT----HHHHHHHHHTS-B-TTS-EEHHHHHHHH CS
  EF-hand_11  12 qkavash.yhaivqefenfdtlksntvsreefraictrrvqiltdeqfdrlwselpvnakgrlkyqdflskl 82 
                 +k    h   a+ + f++fd+ ks t    ef+       + + + + + l++    ++ g++ + +f+  l
  KOO24200.1 404 RKLFKDHdIGALRKTFQEFDADKSGTFELAEFKEAMRVVDRTMPETDVETLFKAADADSSGQVDFSEFMGTL 475
                 555555523577889******************987666677888899999999999999999999999876 PP

  == domain 3  score: -2.7 bits;  conditional E-value: 7.9
                 HHHHHHHTS-B-TTS-EEHHHHHHHHCS-.----- CS
  EF-hand_11  57 qfdrlwselpvnakgrlkyqdflsklsiervaatp 91 
                  + r+ + +  +  g +++++f   +++e +    
  KOO24200.1 573 AMHRMIDLMDYDGSGDIQFDEFARVFAAEDIRNMK 607
                 46778888888888889999998888888665443 PP

>> SPARC_Ca_bdg  Secreted protein acidic and rich in cysteine Ca binding region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.7   0.0      0.46   6.3e+02      57     111 ..     137     193 ..     105     194 .. 0.74
   2 ?    7.2   0.0    0.0043       5.9      39     111 ..     398     472 ..     369     473 .. 0.80
   3 ?    2.1   0.0      0.17   2.3e+02      59     111 ..     540     595 ..     504     597 .. 0.82

  Alignments for each domain:
  == domain 1  score: 0.7 bits;  conditional E-value: 0.46
  SPARC_Ca_bdg  57 awkFsklDtnsdkvlsksELapl.r.aplvklehCikpflescDadkdkkislkEwc 111
                      F + D ++ ++++  E ++  r  +l+ +e+ + ++++++Dad  + ++ +E++
    KOO24200.1 137 LTVFREHDHDKSGTFEFPEFRDAmRsVNLDLTEKDMVALFRAADADGSGCLEFSEFI 193
                   4567788888888888888765413135788999999*********99999999986 PP

  == domain 2  score: 7.2 bits;  conditional E-value: 0.0043
  SPARC_Ca_bdg  39 elekkeeeknlkeckepvawkFsklDtnsdkvlsksELaplraplvkl..ehCikpflescDadkdkkislkEwc 111
                   +l +   + ++++   +++  F+++D ++ ++++ +E ++    ++++  e+ ++++++++Dad+ ++++ +E++
    KOO24200.1 398 QLLQTMRKLFKDHDIGALRKTFQEFDADKSGTFELAEFKEAMRVVDRTmpETDVETLFKAADADSSGQVDFSEFM 472
                   555555566666666777889*********999999998877666553348999*******************97 PP

  == domain 3  score: 2.1 bits;  conditional E-value: 0.17
  SPARC_Ca_bdg  59 kFsklDtnsdkvlsksELaplrap...lvklehCikpflescDadkdkkislkEwc 111
                    F  +D +  +  ++ EL+++ +    l   e+ ++++++  D d  ++i+  E++
    KOO24200.1 540 CFRAIDEDGSGKCDRVELSQMLNAmfnLNVPEKAMHRMIDLMDYDGSGDIQFDEFA 595
                   5889999999999****9998765111455699999****************9997 PP

>> DUF5580  Family of unknown function (DUF5580)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.9   0.0     0.089   1.2e+02     311     364 ..     122     175 ..     114     201 .. 0.73
   2 ?    7.9   0.0   0.00072         1     301     418 ..     392     508 ..     349     517 .. 0.79

  Alignments for each domain:
  == domain 1  score: 0.9 bits;  conditional E-value: 0.089
     DUF5580 311 malktakgklnlenLnlsFrkeDrsfsGlLpppkvraiCgkhglyltlslletl 364
                 +++++  +k +l+ L   Fr+ D+  sG+   p+ r       l lt   + +l
  KOO24200.1 122 QVMREFFQKHDLHALLTVFREHDHDKSGTFEFPEFRDAMRSVNLDLTEKDMVAL 175
                 577888889999999999999999999999999888766666666665555555 PP

  == domain 2  score: 7.9 bits;  conditional E-value: 0.00072
     DUF5580 301 vnkslleiLkmalktakgklnlenLnlsFrkeDrsfsGlLpppkvraiCgkhglyltlslletllnhqdlgyqdeikWqnfvelLsrassdlssdlPtg 399
                 + +  +++L+ ++++  ++ ++  L+  F++ D   sG+   ++ +         ++ + +etl +  d    +++ + +f+  L++     ++   t+
  KOO24200.1 392 TAEPNIQLLQ-TMRKLFKDHDIGALRKTFQEFDADKSGTFELAEFKEAMRVVDRTMPETDVETLFKAADADSSGQVDFSEFMGTLKKVEEIGRKRTVTE 489
                 3345577777.667777778******************************************************************9988887777777 PP

     DUF5580 400 keekevsakpvepevpevs 418
                 ++ + ++a+++++   e s
  KOO24200.1 490 RRARYIPAATAKAYDLEPS 508
                 7777777777766655555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1028 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       777  (0.0433376); expected 358.6 (0.02)
Passed bias filter:                      461  (0.0257125); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                        13  (0.000725082); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 0.76u 0.31s 00:00:01.07 Elapsed: 00:00:00.45
# Mc/sec: 6837.99
//
Query:       KOO24201.1  [L=1381]
Description: signal recognition particle 68 kda protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   2.4e-121  406.5   0.0   2.8e-121  406.3   0.0    1.0  1  SRP68            RNA-binding signal recognition particle 68
   1.3e-115  378.0 147.2      2e-13   50.7   6.2   13.4 13  VCBS             Repeat domain in Vibrio, Colwellia, Bradyrhi
    9.7e-58  191.9 151.7    6.1e-05   23.1   3.3   14.6 14  FG-GAP           FG-GAP repeat
      6e-11   42.4  48.1        1.8    8.8   0.3   13.9 14  Dockerin_1       Dockerin type I domain
     0.0038   17.3   0.0         32    4.7   0.0    5.9  7  TM_PBP2_N        N-terminal of TM subunit in PBP-dependent AB
  ------ inclusion threshold ------
        5.1    7.3   6.3         19    5.4   0.0    5.2  7  HycA_repressor   Transcriptional repressor of hyc and hyp ope


Domain annotation for each model (and alignments):
>> SRP68  RNA-binding signal recognition particle 68
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  406.3   0.0  9.2e-125  2.8e-121       1     558 [.     808    1352 ..     808    1353 .. 0.94

  Alignments for each domain:
  == domain 1  score: 406.3 bits;  conditional E-value: 9.2e-125
                  TSSS-HHHHHHHHHHHHHHHHHHTT--SS----SS-TT--HHHHHH-THHHHHHHHHHHHHHHHHHHHHHHTCTTTTTS-HHHHHHHHHHHHHHHHH CS
       SRP68    1 LrhgDYqrYrqyltrrLrrlRkkLkfatgkrgkyakkaitaeqvatdvrylhllLltaERaWAyamalKaehsadkkgitgrkRshivsRLrKAakl 97  
                  LrhgDY rYrqy++rrL+r+Rk ++f++gk+ +y+kk++++ +v +d r+l+++L++aERaWA amalK e        ++r R+ ++ RL+KAa++
  KOO24201.1  808 LRHGDYVRYRQYCSRRLHRVRKAVGFLHGKG-RYVKKQLEPRMV-KDSRFLLIPLYCAERAWAFAMALKREDVVA----QPRLRFRLLHRLSKAAQW 898 
                  9*****************************9.************.**************************7666....5***************** PP

                  HHHHHHHHHCS.-S--HHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHHHHTTTHHHHHHHTHH...HHHHHHHHHCT-SSS--HH CS
       SRP68   98 AeeLvellseassgadertkLEarAYaallrGallfekqqWekalesyskaraiyeaLakvtseefkdllsetveelePsiRYcaYqlkeprtapse 194 
                  A+ L++l+   + + d+rt+LEa+AYa ++ G++++e+++W +a+ ++ ++++i+++La+v+ +++  l+++ v e++PsiR+caY+l+++++a  e
  KOO24201.1  899 ATGLAKLC---AIRGDKRTALEAEAYAGFIVGNMHLERERWAQAISNFRRTKTICTELARVSMSDQAHLYTKVVAEVQPSIRFCAYNLRRTGEAVGE 992 
                  ********...8*********************************************************************************9999 PP

                  HHHHHHH..........HH-.XXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX...XX..XXXXXXXX CS
       SRP68  195 tiarkaf..........ekaendllqskiekldpealkeqaasksskapseitWrgrevkvedakirlalaavqeakaelee...es.kssakekaa 277 
                  ++  ++            ++++d l+sk+e++ +e +++qa++     ++e++ +g++v+v++ k+r+a++a q+ + e+e     +    +   ++
  KOO24201.1  993 AEGDEDGdvegmlqdedGGSGSDILRSKLEAVRQESRARQAQD-----LTEVEVLGERVPVRSDKVRIAMLASQQKEVEIEHlsaPAgMPPPAGLME 1084
                  98877778899999999677799*******************9.....**********************************865226789999*** PP

                  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXXXXXXXXXXX CS
       SRP68  278 aYdkvLiasqDavdatkqaidelekegvaqsdkrmqslqilrtavnyeklswrieRnrvlvgeadgklaeessakskkkkkegrklakleElvrLyd 374 
                  +Yd+++ a +Da++ ++ ++++ +ke++a s +  ++l  l++ ++ +kl +++ R+ +lv++++++la+ s a        g k   + ++vrLyd
  KOO24201.1 1085 KYDELFVAFNDALEGVRADLRAAAKEQTARSGAAESALLKLQASLTWQKLHHTVRRTLLLVESLKRSLAGDSGA--------GAKRVAPDDIVRLYD 1173
                  ******************************************************************99997644........556778********* PP

                  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
       SRP68  375 allqslesikelpgvaadeelaeeleakkayfrAlrclyiarshalaskyaeAlALlkrAlelaeealeelsksdakskpeslevlleelqeLadel 471 
                  a + sl ++ +l+g ++de l+ +++a+ a  +A+rc+ +a+s+ +a +y+eA AL+ r++ l++ea+ +l+++        +      l +L++ +
  KOO24201.1 1174 ACISSLGEMGQLEGYREDEVLMSQVAARLAGAKACRCFFLAESYGVATRYLEAQALYGRSEFLMQEAEAMLEEAGY----TVETPERVALAKLEQMI 1266
                  ***********************************************************************99997....56666777899****** PP

                  XXXXXXXXXXXXX..XX..XXX.............XXXXX.XXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
       SRP68  472 kgelqrarAlveleelk..keeeslkkslsklslsekaaa.kkkkkpllerLdeypssggevdlknlvelPPklepvpvKPiflDvAlNy 558 
                  +g ++ra+A++++++l+   ++ +++  l++l+l+++ +  ++ ++ l ++L++++ ++     ++l+++PP +e+ p+KP+++D+A N+
  KOO24201.1 1267 DGARARAHAQAFVNTLTggPAAAEAEGALASLELNGEGDVaGAGERSLYDSLETFERPN----PEHLIPFPPDFETTPCKPLLFDIARNQ 1352
                  **************888554555666777777777665547999************965....4668********************996 PP

>> VCBS  Repeat domain in Vibrio, Colwellia, Bradyrhizobium and Shewanella
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.5   4.5   3.2e-16   9.6e-13       1      60 [.      29      88 ..      29      89 .. 0.83
   2 !   46.0   6.7     2e-15   6.1e-12       1      60 [.      78     137 ..      78     138 .. 0.81
   3 !   44.0   4.4   8.2e-15   2.4e-11       1      60 [.     127     186 ..     127     187 .. 0.79
   4 !   30.4   0.8   1.5e-10   4.5e-07      14      61 .]     190     236 ..     186     236 .. 0.80
   5 !   50.7   6.2   6.6e-17     2e-13       1      60 [.     225     284 ..     225     285 .. 0.86
   6 !   28.4   0.3   6.4e-10   1.9e-06      16      60 ..     291     335 ..     286     336 .. 0.78
   7 !   27.6   0.5   1.1e-09   3.4e-06      16      60 ..     342     389 ..     335     390 .. 0.65
   8 !   48.1   5.3   4.4e-16   1.3e-12       1      61 []     379     439 ..     379     439 .. 0.82
   9 !   49.0   5.8   2.2e-16   6.7e-13       1      60 [.     428     487 ..     428     488 .. 0.85
  10 !   48.6   5.3   3.1e-16   9.4e-13       1      60 [.     477     536 ..     477     537 .. 0.88
  11 !   43.9   4.7   8.8e-15   2.6e-11       1      60 [.     526     585 ..     526     586 .. 0.84
  12 !   44.1   6.9     8e-15   2.4e-11       1      60 [.     575     640 ..     575     641 .. 0.73
  13 !   49.8   5.6   1.3e-16   3.9e-13       1      60 [.     630     688 ..     630     689 .. 0.88

  Alignments for each domain:
  == domain 1  score: 48.5 bits;  conditional E-value: 3.2e-16
        VCBS  1 DldgDGrlDlvvandgg.lrvyrnngdGtftdvtktslggsgggt.gvavgDlDgDGdlDll 60
                D+dgDG+lD++++n+g+   v++n gdGtf  +t+++l+g+ ++t ++a++D+DgDGdlD+l
  KOO24201.1 29 DVDGDGDLDVLLGNYGSpSLVLLNAGDGTF--PTSIELPGGSASTnSIAAADMDGDGDLDVL 88
                9*************7551666888888865..889999886666549*************98 PP

  == domain 2  score: 46.0 bits;  conditional E-value: 2e-15
        VCBS   1 DldgDGrlDlvvandgg.lrvyrnngdGtftdvtktslgg.sgggtgvavgDlDgDGdlDll 60 
                 D+dgDG+lD++++n+g+   v++n gdGtf   t+++l+g s +  ++a++D+DgDGdlD+l
  KOO24201.1  78 DMDGDGDLDVLLGNYGSpSLVLLNAGDGTF--LTSIELPGgSSDTSSIAAADVDGDGDLDVL 137
                 9*************7551666888888876..688888883455558*************98 PP

  == domain 3  score: 44.0 bits;  conditional E-value: 8.2e-15
        VCBS   1 DldgDGrlDlvvand.gglrvyrnngdGtftdvtktslgg.sgggtgvavgDlDgDGdlDll 60 
                 D+dgDG+lD++++n+ ++  v++n gdGt+    +++l+g s   +++a++D+DgDGdlD+l
  KOO24201.1 127 DVDGDGDLDVLLGNYgSPSLVLLNAGDGTL--LMSIELPGgSASTNSIAAADVDGDGDLDVL 186
                 9*************6155667888888876..455666662555569*************98 PP

  == domain 4  score: 30.4 bits;  conditional E-value: 1.5e-10
        VCBS  14 ndgglrvyrnngdGtftdvtktslgg.sgggtgvavgDlDgDGdlDllv 61 
                 n ++  v++n gdGtf   t+++l+g s +  ++a++D+DgDGdlD+lv
  KOO24201.1 190 NASPSLVLLNVGDGTF--LTSIELPGgSSDTSSIAAADVDGDGDLDVLV 236
                 556678999**99987..678888883555558**************98 PP

  == domain 5  score: 50.7 bits;  conditional E-value: 6.6e-17
        VCBS   1 DldgDGrlDlvvan.dgglrvyrnngdGtftdvtktslgg.sgggtgvavgDlDgDGdlDll 60 
                 D+dgDG+lD++v+n d + +v++n gdGtf  +t+++l+g s+g  ++a++D+DgDGdlD+l
  KOO24201.1 225 DVDGDGDLDVLVGNnDRPSVVLLNAGDGTF--PTSITLPGrSFGTSSIAAADVDGDGDLDVL 284
                 9************86888999999999987..788888884666669*************98 PP

  == domain 6  score: 28.4 bits;  conditional E-value: 6.4e-10
        VCBS  16 gglrvyrnngdGtftdvtktslggsgggtgvavgDlDgDGdlDll 60 
                 g+  v++n gdGtf  + + +++++gg  ++a++D DgDGdlD+l
  KOO24201.1 291 GSSLVLLNAGDGTFPTSIELPGSSAGGTKSIAAADADGDGDLDVL 335
                 567789999999885554445555777779*************98 PP

  == domain 7  score: 27.6 bits;  conditional E-value: 1.1e-09
        VCBS  16 gglrvyrnn...gdGtftdvtktslggsgggt..gvavgDlDgDGdlDll 60 
                 g+ r+++n    gdGt  ++t+++l+gs +g+  ++a++D+DgDGdlD+l
  KOO24201.1 342 GPSRLLLNLvnvGDGT--FPTSIALPGSSAGHtsSIAAADVDGDGDLDVL 389
                 4455555542115665..57777777744444337*************98 PP

  == domain 8  score: 48.1 bits;  conditional E-value: 4.4e-16
        VCBS   1 DldgDGrlDlvvand.gglrvyrnngdGtftdvtktslgg.sgggtgvavgDlDgDGdlDllv 61 
                 D+dgDG+lD++++n+ ++  v++n gdGtf    +++l+g s + +++a++D+DgDGdlD+lv
  KOO24201.1 379 DVDGDGDLDVLLGNYgSPSLVLLNAGDGTFL--MSIELPGgSANTYSIAAADVDGDGDLDVLV 439
                 9*************62557779999999985..3455555377778***************98 PP

  == domain 9  score: 49.0 bits;  conditional E-value: 2.2e-16
        VCBS   1 DldgDGrlDlvvandgg.lrvyrnngdGtftdvtktslgg.sgggtgvavgDlDgDGdlDll 60 
                 D+dgDG+lD++v+n+g+  +v++n gdGtf  +t+++l+g s +g ++a++D+DgDGdlD+l
  KOO24201.1 428 DVDGDGDLDVLVGNWGSlSHVLLNAGDGTF--PTSVELPGgSEYGSSIAAADVDGDGDLDVL 487
                 9*************7665899999999987..566666664677889*************98 PP

  == domain 10  score: 48.6 bits;  conditional E-value: 3.1e-16
        VCBS   1 DldgDGrlDlvvan.dgglrvyrnngdGtftdvtktslgg.sgggtgvavgDlDgDGdlDll 60 
                 D+dgDG+lD++++n d++  v++n gdGtf   t+++l+g s   ++va++D+DgDGdlD+l
  KOO24201.1 477 DVDGDGDLDVLLVNyDSPSLVLLNAGDGTF--LTSIELPGvSTSTNSVAAADMDGDGDLDVL 536
                 9************97899999****99987..688988884555569*************98 PP

  == domain 11  score: 43.9 bits;  conditional E-value: 8.8e-15
        VCBS   1 DldgDGrlDlvvand.gglrvyrnngdGtftdvtktslggsgggtgvavgDlDgDGdlDll 60 
                 D+dgDG+lD++++n+ ++  v++n gdGt+   ++   ggs +  ++a++D+DgDGdlD+l
  KOO24201.1 526 DMDGDGDLDVLLGNYgSPSLVLLNAGDGTLL-MSSALPGGSSDTSSIAAADVDGDGDLDVL 585
                 9*************626677799999**986.5556666677899**************98 PP

  == domain 12  score: 44.1 bits;  conditional E-value: 8e-15
        VCBS   1 DldgDGrlDlvvand.gglrvyrnngdGtftdvtktslgg.......sgggtgvavgDlDgDGdlDll 60 
                 D+dgDG+lD++++n+ ++  v++n gdGtf   t+++l+g         + +++a++D+DgDGdlD+l
  KOO24201.1 575 DVDGDGDLDVLLGNYgSPSLVLLNAGDGTFL--TSIALSGgrsgtssITYTNSIAAADVDGDGDLDVL 640
                 9*************62557778899999875..55555552244443333446*************98 PP

  == domain 13  score: 49.8 bits;  conditional E-value: 1.3e-16
        VCBS   1 DldgDGrlDlvvandgg.lrvyrnngdGtftdvtktslggsgggtgvavgDlDgDGdlDll 60 
                 D+dgDG+lD++++n+g+   v++n gdGtf  +t+++lggs + +++a++D DgDGdlD+l
  KOO24201.1 630 DVDGDGDLDVLLGNYGSpSLVLLNAGDGTF--PTSIELGGSANTYSIAAADADGDGDLDVL 688
                 9*************7551666888888765..89*************************98 PP

>> FG-GAP  FG-GAP repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.1   3.3     2e-08   6.1e-05       1      29 [.      21      45 ..      21      49 .. 0.91
   2 !   20.2   2.2   1.6e-07   0.00046       3      29 ..      72      94 ..      70      98 .. 0.89
   3 !   20.9   3.4   9.7e-08   0.00029       3      29 ..     121     143 ..     120     147 .. 0.89
   4 !   18.9   2.8   4.2e-07    0.0013       3      21 ..     170     188 ..     168     196 .. 0.88
   5 !   18.3   5.9   6.1e-07    0.0018       3      22 ..     219     238 ..     218     252 .. 0.87
   6 !   18.8   4.5   4.3e-07    0.0013       2      28 ..     267     289 ..     266     293 .. 0.88
   7 !   11.7   3.7   7.5e-05      0.22       4      21 ..     320     337 ..     317     345 .. 0.87
   8 !   22.2   2.3   3.8e-08   0.00011       3      29 ..     373     395 ..     371     399 .. 0.89
   9 !   20.4   4.7   1.4e-07   0.00043       2      21 ..     421     440 ..     420     456 .. 0.87
  10 !   18.7   4.0   4.7e-07    0.0014       2      21 ..     470     489 ..     469     497 .. 0.88
  11 !   20.9   2.7   9.8e-08   0.00029       3      29 ..     520     542 ..     518     546 .. 0.89
  12 !   20.9   3.4   9.7e-08   0.00029       3      29 ..     569     591 ..     568     595 .. 0.89
  13 !   20.6   3.4   1.2e-07   0.00035       3      29 ..     624     646 ..     622     650 .. 0.88
  14 !   16.2   3.9   2.9e-06    0.0087       2      22 ..     671     691 ..     670     699 .. 0.84

  Alignments for each domain:
  == domain 1  score: 23.1 bits;  conditional E-value: 2e-08
                TTSSEEEESTSSSSS-EEEEEETT-ETCS CS
      FG-GAP  1 fGyslavgDvNGDGyaDLavGApeskgga 29
                f +s+a++Dv+GDG  D+++G    ++g+
  KOO24201.1 21 FTSSIAAADVDGDGDLDVLLG----NYGS 45
                889******************....7765 PP

  == domain 2  score: 20.2 bits;  conditional E-value: 1.6e-07
                SSEEEESTSSSSS-EEEEEETT-ETCS CS
      FG-GAP  3 yslavgDvNGDGyaDLavGApeskgga 29
                +s+a++D++GDG  D+++G    ++g+
  KOO24201.1 72 NSIAAADMDGDGDLDVLLG----NYGS 94
                79*****************....7765 PP

  == domain 3  score: 20.9 bits;  conditional E-value: 9.7e-08
                 SSEEEESTSSSSS-EEEEEETT-ETCS CS
      FG-GAP   3 yslavgDvNGDGyaDLavGApeskgga 29 
                 +s+a++Dv+GDG  D+++G    ++g+
  KOO24201.1 121 SSIAAADVDGDGDLDVLLG----NYGS 143
                 89*****************....7765 PP

  == domain 4  score: 18.9 bits;  conditional E-value: 4.2e-07
                 SSEEEESTSSSSS-EEEEE CS
      FG-GAP   3 yslavgDvNGDGyaDLavG 21 
                 +s+a++Dv+GDG  D+++G
  KOO24201.1 170 NSIAAADVDGDGDLDVLLG 188
                 79****************9 PP

  == domain 5  score: 18.3 bits;  conditional E-value: 6.1e-07
                 SSEEEESTSSSSS-EEEEEE CS
      FG-GAP   3 yslavgDvNGDGyaDLavGA 22 
                 +s+a++Dv+GDG  D++vG 
  KOO24201.1 219 SSIAAADVDGDGDLDVLVGN 238
                 89*****************3 PP

  == domain 6  score: 18.8 bits;  conditional E-value: 4.3e-07
                 TSSEEEESTSSSSS-EEEEEETT-ETC CS
      FG-GAP   2 GyslavgDvNGDGyaDLavGApeskgg 28 
                  +s+a++Dv+GDG  D+++G    k++
  KOO24201.1 267 TSSIAAADVDGDGDLDVLLG----KYL 289
                 689*****************....665 PP

  == domain 7  score: 11.7 bits;  conditional E-value: 7.5e-05
                 SEEEESTSSSSS-EEEEE CS
      FG-GAP   4 slavgDvNGDGyaDLavG 21 
                 s+a++D +GDG  D+++G
  KOO24201.1 320 SIAAADADGDGDLDVLLG 337
                 89***************9 PP

  == domain 8  score: 22.2 bits;  conditional E-value: 3.8e-08
                 SSEEEESTSSSSS-EEEEEETT-ETCS CS
      FG-GAP   3 yslavgDvNGDGyaDLavGApeskgga 29 
                 +s+a++Dv+GDG  D+++G    ++g+
  KOO24201.1 373 SSIAAADVDGDGDLDVLLG----NYGS 395
                 89*****************....7765 PP

  == domain 9  score: 20.4 bits;  conditional E-value: 1.4e-07
                 TSSEEEESTSSSSS-EEEEE CS
      FG-GAP   2 GyslavgDvNGDGyaDLavG 21 
                  ys+a++Dv+GDG  D++vG
  KOO24201.1 421 TYSIAAADVDGDGDLDVLVG 440
                 69****************** PP

  == domain 10  score: 18.7 bits;  conditional E-value: 4.7e-07
                 TSSEEEESTSSSSS-EEEEE CS
      FG-GAP   2 GyslavgDvNGDGyaDLavG 21 
                 G+s+a++Dv+GDG  D+++ 
  KOO24201.1 470 GSSIAAADVDGDGDLDVLLV 489
                 9*****************98 PP

  == domain 11  score: 20.9 bits;  conditional E-value: 9.8e-08
                 SSEEEESTSSSSS-EEEEEETT-ETCS CS
      FG-GAP   3 yslavgDvNGDGyaDLavGApeskgga 29 
                 +s+a++D++GDG  D+++G    ++g+
  KOO24201.1 520 NSVAAADMDGDGDLDVLLG----NYGS 542
                 79*****************....7765 PP

  == domain 12  score: 20.9 bits;  conditional E-value: 9.7e-08
                 SSEEEESTSSSSS-EEEEEETT-ETCS CS
      FG-GAP   3 yslavgDvNGDGyaDLavGApeskgga 29 
                 +s+a++Dv+GDG  D+++G    ++g+
  KOO24201.1 569 SSIAAADVDGDGDLDVLLG----NYGS 591
                 89*****************....7765 PP

  == domain 13  score: 20.6 bits;  conditional E-value: 1.2e-07
                 SSEEEESTSSSSS-EEEEEETT-ETCS CS
      FG-GAP   3 yslavgDvNGDGyaDLavGApeskgga 29 
                 +s+a++Dv+GDG  D+++G    ++g+
  KOO24201.1 624 NSIAAADVDGDGDLDVLLG----NYGS 646
                 79*****************....7765 PP

  == domain 14  score: 16.2 bits;  conditional E-value: 2.9e-06
                 TSSEEEESTSSSSS-EEEEEE CS
      FG-GAP   2 GyslavgDvNGDGyaDLavGA 22 
                  ys+a++D +GDG  D+++G 
  KOO24201.1 671 TYSIAAADADGDGDLDVLLGN 691
                 69******************3 PP

>> Dockerin_1  Dockerin type I domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.6   0.0     0.013        39      29      46 ..      20      37 ..       7      39 .. 0.82
   2 ?    4.4   0.1     0.015        43      26      46 ..      66      86 ..      50      88 .. 0.84
   3 !    7.3   0.1    0.0018       5.4      25      46 ..     114     135 ..      99     137 .. 0.81
   4 !    6.1   0.4    0.0043        13      25      46 ..     163     184 ..     149     190 .. 0.78
   5 !    7.0   0.5    0.0022       6.6      25      46 ..     212     233 ..     183     235 .. 0.81
   6 ?    4.6   0.1     0.013        38      29      46 ..     265     282 ..     248     284 .. 0.84
   7 ?    0.9   0.0      0.18   5.3e+02      30      46 ..     317     333 ..     287     335 .. 0.85
   8 !    5.0   0.0    0.0093        28      28      46 ..     369     387 ..     346     389 .. 0.82
   9 ?    4.7   0.1     0.012        35      26      46 ..     416     436 ..     401     438 .. 0.80
  10 ?    4.2   0.1     0.017        51      31      46 ..     470     485 ..     458     490 .. 0.81
  11 ?    4.0   0.1     0.019        58      28      46 ..     516     534 ..     499     536 .. 0.81
  12 !    8.8   0.3   0.00059       1.8      11      46 ..     549     583 ..     548     585 .. 0.80
  13 ?    3.6   0.1     0.025        76      32      46 ..     624     638 ..     604     640 .. 0.84
  14 ?    1.1   0.1      0.16   4.7e+02      28      46 ..     668     686 ..     652     688 .. 0.83

  Alignments for each domain:
  == domain 1  score: 4.6 bits;  conditional E-value: 0.013
                TSCCCHGGGSTT-SSCES CS
  Dockerin_1 29 ssssngkaaDvNgDGrvn 46
                + +s  +aaDv+gDG  +
  KOO24201.1 20 EFTSSIAAADVDGDGDLD 37
                5678899********865 PP

  == domain 2  score: 4.4 bits;  conditional E-value: 0.015
                EBTTSCCCHGGGSTT-SSCES CS
  Dockerin_1 26 egqssssngkaaDvNgDGrvn 46
                +g+ s++  +aaD++gDG  +
  KOO24201.1 66 GGSASTNSIAAADMDGDGDLD 86
                567888999*********865 PP

  == domain 3  score: 7.3 bits;  conditional E-value: 0.0018
                 SEBTTSCCCHGGGSTT-SSCES CS
  Dockerin_1  25 regqssssngkaaDvNgDGrvn 46 
                  +g+s++s  +aaDv+gDG  +
  KOO24201.1 114 PGGSSDTSSIAAADVDGDGDLD 135
                 5789999************865 PP

  == domain 4  score: 6.1 bits;  conditional E-value: 0.0043
                 SEBTTSCCCHGGGSTT-SSCES CS
  Dockerin_1  25 regqssssngkaaDvNgDGrvn 46 
                  +g+ s++  +aaDv+gDG  +
  KOO24201.1 163 PGGSASTNSIAAADVDGDGDLD 184
                 5788899999*********865 PP

  == domain 5  score: 7.0 bits;  conditional E-value: 0.0022
                 SEBTTSCCCHGGGSTT-SSCES CS
  Dockerin_1  25 regqssssngkaaDvNgDGrvn 46 
                  +g+s++s  +aaDv+gDG  +
  KOO24201.1 212 PGGSSDTSSIAAADVDGDGDLD 233
                 678999*************865 PP

  == domain 6  score: 4.6 bits;  conditional E-value: 0.013
                 TSCCCHGGGSTT-SSCES CS
  Dockerin_1  29 ssssngkaaDvNgDGrvn 46 
                   +s  +aaDv+gDG  +
  KOO24201.1 265 FGTSSIAAADVDGDGDLD 282
                 5678899********865 PP

  == domain 7  score: 0.9 bits;  conditional E-value: 0.18
                 SCCCHGGGSTT-SSCES CS
  Dockerin_1  30 sssngkaaDvNgDGrvn 46 
                  ++  +aaD +gDG  +
  KOO24201.1 317 GTKSIAAADADGDGDLD 333
                 5677899*******865 PP

  == domain 8  score: 5.0 bits;  conditional E-value: 0.0093
                 TTSCCCHGGGSTT-SSCES CS
  Dockerin_1  28 qssssngkaaDvNgDGrvn 46 
                  + +s  +aaDv+gDG  +
  KOO24201.1 369 AGHTSSIAAADVDGDGDLD 387
                 56788999********865 PP

  == domain 9  score: 4.7 bits;  conditional E-value: 0.012
                 EBTTSCCCHGGGSTT-SSCES CS
  Dockerin_1  26 egqssssngkaaDvNgDGrvn 46 
                 +g+ ++   +aaDv+gDG  +
  KOO24201.1 416 GGSANTYSIAAADVDGDGDLD 436
                 5667778899********865 PP

  == domain 10  score: 4.2 bits;  conditional E-value: 0.017
                 CCCHGGGSTT-SSCES CS
  Dockerin_1  31 ssngkaaDvNgDGrvn 46 
                  s  +aaDv+gDG  +
  KOO24201.1 470 GSSIAAADVDGDGDLD 485
                 567899*******754 PP

  == domain 11  score: 4.0 bits;  conditional E-value: 0.019
                 TTSCCCHGGGSTT-SSCES CS
  Dockerin_1  28 qssssngkaaDvNgDGrvn 46 
                 ++s++  +aaD++gDG  +
  KOO24201.1 516 STSTNSVAAADMDGDGDLD 534
                 67888999********865 PP

  == domain 12  score: 8.8 bits;  conditional E-value: 0.00059
                 SHHHHHHHHHHCTSSEBTTSCCCHGGGSTT-SSCES CS
  Dockerin_1  11 nalDalliinylnqregqssssngkaaDvNgDGrvn 46 
                 na D +l+    +  +g+s++s  +aaDv+gDG  +
  KOO24201.1 549 NAGDGTLLMSSAL-PGGSSDTSSIAAADVDGDGDLD 583
                 5666666666666.799****************865 PP

  == domain 13  score: 3.6 bits;  conditional E-value: 0.025
                 CCHGGGSTT-SSCES CS
  Dockerin_1  32 sngkaaDvNgDGrvn 46 
                 +  +aaDv+gDG  +
  KOO24201.1 624 NSIAAADVDGDGDLD 638
                 56789******9765 PP

  == domain 14  score: 1.1 bits;  conditional E-value: 0.16
                 TTSCCCHGGGSTT-SSCES CS
  Dockerin_1  28 qssssngkaaDvNgDGrvn 46 
                 + ++   +aaD +gDG  +
  KOO24201.1 668 SANTYSIAAADADGDGDLD 686
                 56677889********865 PP

>> TM_PBP2_N  N-terminal of TM subunit in PBP-dependent ABC transporters
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.2   0.0     0.032        96      36      71 ..       6      41 ..       2      47 .. 0.86
   2 ?   -2.3   0.0       1.7   5.1e+03      49      74 ..     215     240 ..     209     245 .. 0.79
   3 ?   -3.7   0.0       4.8   1.4e+04      48      70 ..     368     390 ..     363     393 .. 0.80
   4 ?   -2.9   0.0       2.7   7.9e+03      46      70 ..     415     439 ..     412     442 .. 0.83
   5 ?    4.7   0.0     0.011        32      44      74 ..     462     492 ..     458     498 .. 0.89
   6 ?   -0.3   0.0       0.4   1.2e+03      46      71 ..     617     642 ..     598     647 .. 0.83
   7 ?   -3.4   0.0       3.8   1.1e+04      52      72 ..     671     691 ..     667     694 .. 0.79

  Alignments for each domain:
  == domain 1  score: 3.2 bits;  conditional E-value: 0.032
   TM_PBP2_N 36 aiqassvkrvedskeYalsvatkgsettgdlvlllt 71
                a+++   + +++  e++ s+a+ + + +gdl +ll 
  KOO24201.1  6 ALLSGRATLPPGGSEFTSSIAAADVDGDGDLDVLLG 41
                5666677789**********************9985 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 1.7
   TM_PBP2_N  49 keYalsvatkgsettgdlvllltdpe 74 
                  + + s+a+ + + +gdl +l+ +++
  KOO24201.1 215 SSDTSSIAAADVDGDGDLDVLVGNND 240
                 55567899999999*******99887 PP

  == domain 3  score: -3.7 bits;  conditional E-value: 4.8
   TM_PBP2_N  48 skeYalsvatkgsettgdlvlll 70 
                 s+  + s+a+ + + +gdl +ll
  KOO24201.1 368 SAGHTSSIAAADVDGDGDLDVLL 390
                 56677889999999999999987 PP

  == domain 4  score: -2.9 bits;  conditional E-value: 2.7
   TM_PBP2_N  46 edskeYalsvatkgsettgdlvlll 70 
                 ++  + ++s+a+ + + +gdl +l+
  KOO24201.1 415 PGGSANTYSIAAADVDGDGDLDVLV 439
                 66777789999999999****9998 PP

  == domain 5  score: 4.7 bits;  conditional E-value: 0.011
   TM_PBP2_N  44 rvedskeYalsvatkgsettgdlvllltdpe 74 
                 + ++  eY  s+a+ + + +gdl +ll++ +
  KOO24201.1 462 ELPGGSEYGSSIAAADVDGDGDLDVLLVNYD 492
                 67999**********************9876 PP

  == domain 6  score: -0.3 bits;  conditional E-value: 0.4
   TM_PBP2_N  46 edskeYalsvatkgsettgdlvlllt 71 
                  +s +Y+ s+a+ + + +gdl +ll 
  KOO24201.1 617 TSSITYTNSIAAADVDGDGDLDVLLG 642
                 57889********99******99985 PP

  == domain 7  score: -3.4 bits;  conditional E-value: 3.8
   TM_PBP2_N  52 alsvatkgsettgdlvllltd 72 
                 ++s+a+ +++ +gdl +ll +
  KOO24201.1 671 TYSIAAADADGDGDLDVLLGN 691
                 567888888999***999865 PP

>> HycA_repressor  Transcriptional repressor of hyc and hyp operons
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.0      0.98   2.9e+03      86     105 ..      67      87 ..      60      92 .. 0.75
   2 ?   -2.1   0.0       1.3     4e+03      85     105 ..     115     136 ..     109     141 .. 0.75
   3 ?   -3.5   0.0       3.5   1.1e+04      86     105 ..     165     185 ..     158     190 .. 0.74
   4 ?    5.4   0.0    0.0064        19      83     116 ..     211     245 ..     204     248 .. 0.82
   5 ?   -1.5   0.0      0.88   2.6e+03      83     108 ..     414     440 ..     408     447 .. 0.79
   6 ?   -2.5   0.0       1.8   5.4e+03      83     109 ..     463     490 ..     459     496 .. 0.77
   7 ?   -3.3   0.1       3.1   9.2e+03      87     105 ..     566     584 ..     563     588 .. 0.82

  Alignments for each domain:
  == domain 1  score: -1.7 bits;  conditional E-value: 0.98
  HycA_repressor  86 geek.vllaratldeeGlldg 105
                     g+     +a a++d +G ld 
      KOO24201.1  67 GSAStNSIAAADMDGDGDLDV 87 
                     5444378***********996 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 1.3
  HycA_repressor  85 dgeek.vllaratldeeGlldg 105
                      g+ +   +a a++d +G ld 
      KOO24201.1 115 GGSSDtSSIAAADVDGDGDLDV 136
                     55444389***********996 PP

  == domain 3  score: -3.5 bits;  conditional E-value: 3.5
  HycA_repressor  86 geek.vllaratldeeGlldg 105
                     g+     +a a++d +G ld 
      KOO24201.1 165 GSAStNSIAAADVDGDGDLDV 185
                     55443789**********996 PP

  == domain 4  score: 5.4 bits;  conditional E-value: 0.0064
  HycA_repressor  83 lkdgeek.vllaratldeeGlldgsvdirdrdavl 116
                     l  g+ +   +a a++d +G ld  v + dr +v+
      KOO24201.1 211 LPGGSSDtSSIAAADVDGDGDLDVLVGNNDRPSVV 245
                     5555544389*********************8874 PP

  == domain 5  score: -1.5 bits;  conditional E-value: 0.88
  HycA_repressor  83 lkdgeek.vllaratldeeGlldgsvd 108
                     l  g+ + + +a a++d +G ld  v 
      KOO24201.1 414 LPGGSANtYSIAAADVDGDGDLDVLVG 440
                     5555555489*************8775 PP

  == domain 6  score: -2.5 bits;  conditional E-value: 1.8
  HycA_repressor  83 lkdgeek.vllaratldeeGlldgsvdi 109
                     l  g+e    +a a++d +G ld  + +
      KOO24201.1 463 LPGGSEYgSSIAAADVDGDGDLDVLLVN 490
                     5566666689************987665 PP

  == domain 7  score: -3.3 bits;  conditional E-value: 3.1
  HycA_repressor  87 eekvllaratldeeGlldg 105
                     ++   +a a++d +G ld 
      KOO24201.1 566 SDTSSIAAADVDGDGDLDV 584
                     56789***********996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1381 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       326  (0.0181828); expected 358.6 (0.02)
Passed bias filter:                      275  (0.0153383); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                        17  (0.000948185); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.92u 0.28s 00:00:01.20 Elapsed: 00:00:00.50
# Mc/sec: 8282.84
//
Query:       KOO24202.1  [L=357]
Description: hypothetical protein Ctob_003011 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    4.1e-35  121.2  17.9      5e-35  120.9  17.9    1.1  1  Ion_trans    Ion transport protein
     0.0022   16.7   4.6     0.0022   16.7   4.6    2.5  3  PKD_channel  Polycystin cation channel


Domain annotation for each model (and alignments):
>> Ion_trans  Ion transport protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  120.9  17.9   5.5e-39     5e-35       2     237 ..       3     254 ..       2     256 .. 0.88

  Alignments for each domain:
  == domain 1  score: 120.9 bits;  conditional E-value: 5.5e-39
                 HHHHHHHHHHHHHHHHHHHCCCSSSSHHHHC...HHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHCHSHHHHHHHHHHHHHHHHH..HHHHHHHHHH CS
   Ion_trans   2 svfelfilllillncvflaletyfpedelek...tileilelvftaiftlemllkilalgllikkrYlrdpwnilDflvvlpsllsl..vlseesllll 95 
                 +v  + + l+i+ n ++  +e   ++d  +     ++  +++v +++f+le+l +++++g+   k ++++ wn++Df++v +++l +  +     l+++
  KOO24202.1   3 PVVVWSVALIIIANFIINIVEKEIDPDVANLqyaAFWSGCDTVSNILFLLELLANMYGYGF--GKMFWGSGWNVFDFIIVAVGILLMtgI----DLGGM 95 
                 667788899*****************8888899999*************************..999*******************99643....489** PP

                 HHHHHHGGGGGGHHHCHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCC........CC.....SCCSTSSSTTTSSSSSSHHH CS
   Ion_trans  96 svlrlfrvlrllklisrleglrtlvtalirsvkdllnvlllllvvlfifaligvqlfkgklrek........ne.....caktwenpnngntnFdnfft 181
                 + l+l+r +r+++l++r+++l  ++tal+ +v+ + n +++l+++++i+a+++v+lf +++  +        n+     +a+t ++  ng+  + +   
  KOO24202.1  96 AKLKLMRAFRVFRLFKRIKSLNKIITALLSAVPGVANAFIILFIFFCIYAILAVELF-RDFGSNgtymtddlNDvshinDAYTPRGYTNGREYYGTWTR 193
                 *********************************************************.44443355555555116445577777777777777999*** PP

                 HHHHHHHHHTTSSHHHHHHHHHHHS.....HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
   Ion_trans 182 allwlfrlmttegwgdilyatldek.....skvaliyfvifiilgsflllNlliaviadnf 237
                 a++++f+lmt++ w + l  +l        +++a ++f++fiil +++l N+++av  d f
  KOO24202.1 194 AMYSMFQLMTGDSWAEALGRPLVFGlyqksTFTAGAFFISFIILTNMVLTNVVVAVLLDKF 254
                 ****************99888876677888***************************9998 PP

>> PKD_channel  Polycystin cation channel
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.1     0.072   6.5e+02     240     260 ..      67      87 ..      25      90 .. 0.71
   2 !   16.7   4.6   2.5e-07    0.0022     301     358 ..      92     152 ..      86     162 .. 0.76
   3 !    5.1   0.2   0.00086       7.7     397     424 ..     228     255 ..     180     256 .. 0.75

  Alignments for each domain:
  == domain 1  score: -1.3 bits;  conditional E-value: 0.072
                  -----HHHHHHHHHHHHHHHH CS
  PKD_channel 240 ylrsvwnlldlaivvlsvvli 260
                     s wn+ d++iv++ ++l+
   KOO24202.1  67 FWGSGWNVFDFIIVAVGILLM 87 
                  34488*******999988875 PP

  == domain 2  score: 16.7 bits;  conditional E-value: 2.5e-07
                  HHHHHHHHHHGGGGG---------------...---------HHHHHHHHHHHHHHHHHHS CS
  PKD_channel 301 lavlvflttlkllkvlrfnktlslltktla...ralkdvlgfalvivilflayaqlgvllf 358
                  l+ +  l ++++++v r++k+++ l k ++   +a+++v+ ++++++i+f  ya+l+v lf
   KOO24202.1  92 LGGMAKLKLMRAFRVFRLFKRIKSLNKIITallSAVPGVANAFIILFIFFCIYAILAVELF 152
                  566778999*************999987661116777777777888888888888777555 PP

  == domain 3  score: 5.1 bits;  conditional E-value: 0.00086
                  HHHHHHHHHHHHHHHHHHHHHHHHT-XX CS
  PKD_channel 397 pllllalvflvifillnlflaiindsye 424
                    +++++++l  ++l n+++a++ d+++
   KOO24202.1 228 GAFFISFIILTNMVLTNVVVAVLLDKFV 255
                  579**********************996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (357 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       777  (0.0433376); expected 358.6 (0.02)
Passed bias filter:                      449  (0.0250432); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.51u 0.25s 00:00:00.76 Elapsed: 00:00:00.41
# Mc/sec: 2595.87
//
Query:       KOO24203.1  [L=336]
Description: putative aarf domain-containing protein kinase 2 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
     0.0034   17.5   0.0     0.0063   16.7   0.0    1.4  1  ABC1      ABC1 family
  ------ inclusion threshold ------
       0.03   14.3   1.7      0.031   14.2   0.4    2.0  2  APH       Phosphotransferase enzyme family
      0.055   13.1   0.0       0.17   11.5   0.0    1.7  2  RIO1      RIO1 family


Domain annotation for each model (and alignments):
>> ABC1  ABC1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.0   1.1e-06    0.0063      74     107 ..       8      41 ..       1      48 [. 0.87

  Alignments for each domain:
  == domain 1  score: 16.7 bits;  conditional E-value: 1.1e-06
        ABC1  74 ldleelvdefskslleEldferEAknaekfrenf 107
                 l+ e++++ef++ l e+ld++ EA+n e+fr  f
  KOO24203.1   8 LNPEAMLREFASMLTEQLDLRVEASNLERFRAAF 41 
                 668999*************************988 PP

>> APH  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   0.4   5.1e-06     0.031     168     192 ..     116     145 ..       9     192 .. 0.78
   2 ?   -2.0   0.0      0.46   2.8e+03     115     137 ..     293     314 ..     228     334 .. 0.60

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 5.1e-06
                 EE-SS-SGGGEEEC........TTEEEEE-- CS
         APH 168 llHgDlhpgNllvd......pddgrvtGviD 192
                 ++HgDlhpgN+ v       p+d ++ +++D
  KOO24203.1 116 FVHGDLHPGNIFVAegptgdPTDVQL-TFLD 145
                 89************655544444444.5555 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 0.46
                 B-SHHCHTCCHHHHHHCHHHCCC CS
         APH 115 ladflaqdlellrqlesatarll 137
                 l d +aq ++++r+l +a+ r +
  KOO24203.1 293 LLDHEAQ-ANEDRLLLAAKERAD 314
                 2222222.444444444433333 PP

>> RIO1  RIO1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   2.8e-05      0.17      73     142 ..      60     131 ..      55     139 .. 0.81
   2 ?   -2.0   0.0      0.38   2.3e+03      83     102 ..     163     182 ..     143     203 .. 0.74

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 2.8e-05
                 --EEE..EETTEEEEE--EETTEEGGBHHHCG.-.HHHHHHHHHHHHHHHHHHHHTSTEEESS-STTSEEEETT CS
        RIO1  73 Pkpie..lkrhvlvmefigedgvaapklkdve.e.eeeaeelyeevleemrklykeaglvHaDLSeyNvlvded 142
                 P+p++  + r+vlv +f++  g +  +      + + e +++ ++ ++++ +++   + vH+DL   N++v e+
  KOO24203.1  60 PEPMApfVSREVLVESFVH--GRPFLEWAAELpRgSPEGRRVCADGIDAVLQMIFLDNFVHGDLHPGNIFVAEG 131
                 555543389**********..777666544333557899**************99**************99876 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 0.38
                 EEEE--EETTEEGGBHHHCG CS
        RIO1  83 lvmefigedgvaapklkdve 102
                 ++++fi+ dg +a+++   +
  KOO24203.1 163 VLLSFIQYDGARAARMMAER 182
                 67899999999999887665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (336 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       449  (0.0250432); expected 358.6 (0.02)
Passed bias filter:                      417  (0.0232584); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.46u 0.25s 00:00:00.71 Elapsed: 00:00:00.40
# Mc/sec: 2500.60
//
Query:       KOO24204.1  [L=692]
Description: flagella-associated protein fap196-like protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    3.1e-19   69.0  26.3     0.0043   17.8   0.0   11.1 12  WD40          WD domain, G-beta repeat
    7.4e-08   32.6   0.2        3.9    7.8   0.0    6.0  6  ANAPC4_WD40   Anaphase-promoting complex subunit 4 WD40 domai
    0.00034   20.4   0.2      0.071   13.1   0.0    3.3  3  PQQ           PQQ enzyme repeat
    0.00093   19.6   6.9       0.14   12.7   0.2    4.6  5  PQQ_3         PQQ-like domain
     0.0017   17.9   0.4       0.93    9.0   0.0    3.5  4  PQQ_2         PQQ-like domain
     0.0049   15.6   0.1      0.055   12.1   0.0    2.1  2  Nup160        Nucleoporin Nup120/160
     0.0059   15.2   0.0       0.15   10.6   0.0    2.8  3  Cytochrom_D1  Cytochrome D1 heme domain
      0.007   16.1   0.4       0.27   10.9   0.0    2.7  2  Hira          TUP1-like enhancer of split


Domain annotation for each model (and alignments):
>> WD40  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.8   0.0   1.9e-06    0.0043       6      28 ..      56      79 ..      52      97 .. 0.78
   2 !    6.8   0.0     0.006        14      13      31 ..     121     138 ..     109     139 .. 0.80
   3 ?   -0.9   0.1       1.7   3.7e+03      19      29 ..     237     248 ..     227     257 .. 0.65
   4 ?   -0.2   0.0      0.97   2.2e+03      23      36 ..     294     307 ..     275     307 .. 0.78
   5 ?    1.4   0.0       0.3   6.8e+02      12      29 ..     325     343 ..     314     350 .. 0.78
   6 !   12.8   0.0   7.4e-05      0.17       9      37 ..     375     404 ..     370     405 .. 0.91
   7 ?    2.9   0.1       0.1   2.3e+02      15      38 .]     432     455 ..     420     455 .. 0.79
   8 !   14.8   0.2   1.8e-05      0.04       7      37 ..     466     495 ..     459     495 .. 0.75
   9 ?    4.6   0.1      0.03        68       5      34 ..     505     539 ..     501     542 .. 0.65
  10 ?   -2.2   0.0       4.2   9.5e+03      26      38 .]     574     586 ..     569     586 .. 0.78
  11 ?    2.6   0.1      0.13   2.9e+02      21      38 .]     624     641 ..     608     641 .. 0.85
  12 !   12.3   0.2   0.00011      0.25       8      38 .]     652     683 ..     645     683 .. 0.85

  Alignments for each domain:
  == domain 1  score: 17.8 bits;  conditional E-value: 1.9e-06
                EEESS.SSEEEEEEETTSSEEEEE CS
        WD40  6 tltGH.ssvtslafspdgawlasG 28
                 l+GH   +t++a sp+ga++asG
  KOO24204.1 56 FLRGHnEAITCMAISPSGALIASG 79
                479**555**************98 PP

  == domain 2  score: 6.8 bits;  conditional E-value: 0.006
                 EEEEEEETTSSEEEEEETT CS
        WD40  13 vtslafspdgawlasGsdD 31 
                 v+ lafspd  +la GsdD
  KOO24204.1 121 VRVLAFSPDDLFLA-GSDD 138
                 77789*******96.**87 PP

  == domain 3  score: -0.9 bits;  conditional E-value: 1.7
                 ETTSSE.EEEEE CS
        WD40  19 spdgaw.lasGs 29 
                 + +g+w l++Gs
  KOO24204.1 237 NASGTWfLVCGS 248
                 558999445776 PP

  == domain 4  score: -0.2 bits;  conditional E-value: 0.97
                 SEEEEEETTSEEEE CS
        WD40  23 awlasGsdDgtvri 36 
                 ++  +G+ Dgt+++
  KOO24204.1 294 PLAYCGMGDGTLKL 307
                 45568955****97 PP

  == domain 5  score: 1.4 bits;  conditional E-value: 0.3
                 S.EEEEEEETTSSEEEEEE CS
        WD40  12 s.vtslafspdgawlasGs 29 
                 + v+s+ +s dg+ +++G+
  KOO24204.1 325 GeVRSVTVSADGRQVLAGT 343
                 2399999*******99994 PP

  == domain 6  score: 12.8 bits;  conditional E-value: 7.4e-05
                 SS.SSEEEEEEETTSSEEEEEETTSEEEEE CS
        WD40   9 GH.ssvtslafspdgawlasGsdDgtvriW 37 
                  H +++++++f  ++ w++s+ + g++r W
  KOO24204.1 375 SHpQPINCISFGGSSEWFISSAESGHLRRW 404
                 69899**************9999****988 PP

  == domain 7  score: 2.9 bits;  conditional E-value: 0.1
                 EEEEETTSSEEEEE.ETTSEEEEEE CS
        WD40  15 slafspdgawlasG.sdDgtvriWd 38 
                 +l+ ++d    +sG s Dg+vr +d
  KOO24204.1 432 CLSIDKDTLECLSGwS-DGNVRCYD 455
                 665556655668999*.*****998 PP

  == domain 8  score: 14.8 bits;  conditional E-value: 1.8e-05
                 EESS.SS....EEEEEEETTSSEEEEEETTSEEEEE CS
        WD40   7 ltGH.ss....vtslafspdgawlasGsdDgtvriW 37 
                  ++H ++    v++        +++sG++Dg vr+W
  KOO24204.1 466 VKAHrGGvsciVRCA------LYIVSGGRDGAVRVW 495
                 578987744444555......789************ PP

  == domain 9  score: 4.6 bits;  conditional E-value: 0.03
                 EEEESS.SSEEEEE..EETTSSE.EE.EEETTSEE CS
        WD40   5 rtltGH.ssvtsla..fspdgaw.la.sGsdDgtv 34 
                 + ++ H + +tsl+   +p+ +  ++ s+++D+++
  KOO24204.1 505 GNFDEHsKRITSLCvdCNPYARSkVIhSCGEDKKI 539
                 458889777*9888775555555322467778876 PP

  == domain 10  score: -2.2 bits;  conditional E-value: 4.2
                 EEEETTSEEEEEE CS
        WD40  26 asGsdDgtvriWd 38 
                 ++++  g +++Wd
  KOO24204.1 574 ITADTSGALKFWD 586
                 56766899****9 PP

  == domain 11  score: 2.6 bits;  conditional E-value: 0.13
                 TSSEEEEEETTSEEEEEE CS
        WD40  21 dgawlasGsdDgtvriWd 38 
                 ++++l++++  g v +Wd
  KOO24204.1 624 SSDFLLACTASGEVQVWD 641
                 6788999999*******9 PP

  == domain 12  score: 12.3 bits;  conditional E-value: 0.00011
                 ESSSS.EEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40   8 tGHss.vtslafspdgawlasGsdDgtvriWd 38 
                  +Hs+ vt  ++ pdg+ ++s ++D  + +W+
  KOO24204.1 652 AAHSDeVTMAKWAPDGKQVVSVGKDACICVWN 683
                 589556*9999*********99*********8 PP

>> ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.2   0.0      0.41   9.2e+02      37      59 ..      60      82 ..      52     110 .. 0.80
   2 ?    4.3   0.0     0.022        49      37      91 ..     117     173 ..     100     174 .. 0.81
   3 !    6.2   0.0    0.0057        13      32      69 ..     317     355 ..     303     360 .. 0.87
   4 ?    4.3   0.0     0.022        50      55      87 ..     444     476 ..     425     478 .. 0.80
   5 ?   -0.3   0.0      0.62   1.4e+03      61      82 ..     538     559 ..     492     602 .. 0.57
   6 !    7.8   0.0    0.0017       3.9       8      62 ..     626     679 ..     622     687 .. 0.81

  Alignments for each domain:
  == domain 1  score: 0.2 bits;  conditional E-value: 0.41
  ANAPC4_WD40 37 edsevrsLaWkpdgklLavaysd 59
                 +++ ++++a +p+g l+a +   
   KOO24204.1 60 HNEAITCMAISPSGALIASGQTS 82
                 67899************998654 PP

  == domain 2  score: 4.3 bits;  conditional E-value: 0.022
  ANAPC4_WD40  37 edsevrsLaWkpdgklLavaysd.g..evrlldaesgkvvhslsvksekavtclgWge 91 
                  + ++vr La++pd+ +La + ++ g  ++ + + ++g++   +++++ +  + l Wge
   KOO24204.1 117 SRNRVRVLAFSPDDLFLAGSDDQpGgaKLCVWHTNTGQLAVLSKTQQRQ-LNFLAWGE 173
                  5679*************98876533346777899999999999998885.99999986 PP

  == domain 3  score: 6.2 bits;  conditional E-value: 0.0057
  ANAPC4_WD40  32 l.eedkedsevrsLaWkpdgklLavaysdgevrlldaes 69 
                    ++++ d+evrs+  + dg+    ++s g++ llda +
   KOO24204.1 317 ClADAQLDGEVRSVTVSADGRQVLAGTSLGNIYLLDARD 355
                  44567899****************************975 PP

  == domain 4  score: 4.3 bits;  conditional E-value: 0.022
  ANAPC4_WD40  55 vaysdgevrlldaesgkvvhslsvksekavtcl 87 
                   ++sdg+vr +da +g  + ++  ++   v+c+
   KOO24204.1 444 SGWSDGNVRCYDARTGAPLWEIVKAHRGGVSCI 476
                  689*************99877655555568886 PP

  == domain 5  score: -0.3 bits;  conditional E-value: 0.62
  ANAPC4_WD40  61 evrlldaesgkvvhslsvksek 82 
                  ++  +d  +++ v+ ++vk+  
   KOO24204.1 538 KIVSIDLDQARRVKCFTVKEGA 559
                  4444444444444444443332 PP

  == domain 6  score: 7.8 bits;  conditional E-value: 0.0017
  ANAPC4_WD40   8 DLiAlatedgellvfRlngqrvwtleedkedsevrsLaWkpdgklLavaysdgev 62 
                  D +   t++ge++v  l    + ++  ++++ ev+  +W pdgk  + + +d  +
   KOO24204.1 626 DFLLACTASGEVQVWDLRTSALLSI-GAAHSDEVTMAKWAPDGKQVVSVGKDACI 679
                  6666678889999999999999999.6889999**********999988888766 PP

>> PQQ  PQQ enzyme repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.0       2.7     6e+03       4      17 ..     245     258 ..     244     259 .. 0.86
   2 ?    3.5   0.0     0.033        74       3      19 ..     339     355 ..     337     355 .. 0.87
   3 !   13.1   0.0   3.2e-05     0.071       9      25 ..     448     464 ..     447     465 .. 0.95

  Alignments for each domain:
  == domain 1  score: -2.5 bits;  conditional E-value: 2.7
                 EEEETTSEEEEEET CS
         PQQ   4 ylgsadGylyAlDa 17 
                 ++gs  G l+ ++a
  KOO24204.1 245 VCGSSAGELCVFNA 258
                 68899******998 PP

  == domain 2  score: 3.5 bits;  conditional E-value: 0.033
                 EEEEETTSEEEEEETTT CS
         PQQ   3 vylgsadGylyAlDadT 19 
                 v +g+  G++y lDa++
  KOO24204.1 339 VLAGTSLGNIYLLDARD 355
                 668899*********86 PP

  == domain 3  score: 13.1 bits;  conditional E-value: 3.2e-05
                 TSEEEEEETTTCCEEEE CS
         PQQ   9 dGylyAlDadTGkvlWr 25 
                 dG+++ +Da+TG  lW+
  KOO24204.1 448 DGNVRCYDARTGAPLWE 464
                 9***************7 PP

>> PQQ_3  PQQ-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.2   0.0      0.53   1.2e+03      24      39 ..     244     259 ..     226     259 .. 0.82
   2 ?   -2.5   0.0       3.6     8e+03      23      33 ..     295     305 ..     285     305 .. 0.84
   3 !   12.7   0.2   6.2e-05      0.14       3      40 .]     313     355 ..     312     355 .. 0.80
   4 !    6.4   0.0    0.0059        13      26      40 .]     442     458 ..     402     458 .. 0.71
   5 ?   -2.1   0.1       2.8   6.2e+03      24      34 ..     481     493 ..     470     495 .. 0.81

  Alignments for each domain:
  == domain 1  score: 0.2 bits;  conditional E-value: 0.53
       PQQ_3  24 vyvgtgdGtlyAlDae 39 
                 +++g++ G l+ ++a+
  KOO24204.1 244 LVCGSSAGELCVFNAA 259
                 789999*******995 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 3.6
       PQQ_3  23 lvyvgtgdGtl 33 
                 l y+g gdGtl
  KOO24204.1 295 LAYCGMGDGTL 305
                 78999999987 PP

  == domain 3  score: 12.7 bits;  conditional E-value: 6.2e-05
       PQQ_3   3 vlWsv....qlpgpvnssp.avdgglvyvgtgdGtlyAlDaet 40 
                 ++W+     ql+g+v s +  +dg+ v +gt+ G++y lDa++
  KOO24204.1 313 LQWTCladaQLDGEVRSVTvSADGRQVLAGTSLGNIYLLDARD 355
                 56777777799999976555556778***************96 PP

  == domain 4  score: 6.4 bits;  conditional E-value: 0.0059
       PQQ_3  26 vgtg..dGtlyAlDaet 40 
                 + +g  dG+++++Da+t
  KOO24204.1 442 CLSGwsDGNVRCYDART 458
                 555567*********98 PP

  == domain 5  score: -2.1 bits;  conditional E-value: 2.8
       PQQ_3  24 vyvgtg..dGtly 34 
                 +y+++g  dG ++
  KOO24204.1 481 LYIVSGgrDGAVR 493
                 8999998888775 PP

>> PQQ_2  PQQ-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.9   0.0       3.7   8.2e+03      44      58 ..     141     155 ..     117     164 .. 0.63
   2 ?    2.8   0.0     0.032        72      84     141 ..     301     355 ..     275     366 .. 0.71
   3 !    9.0   0.0   0.00042      0.93     130     148 ..     447     465 ..     401     496 .. 0.73
   4 ?    1.7   0.0     0.072   1.6e+02     160     194 ..     609     646 ..     540     680 .. 0.71

  Alignments for each domain:
  == domain 1  score: -3.9 bits;  conditional E-value: 3.7
       PQQ_2  44 gggrlvaldaatGkv 58 
                 gg++l+ + ++tG++
  KOO24204.1 141 GGAKLCVWHTNTGQL 155
                 667777777777766 PP

  == domain 2  score: 2.8 bits;  conditional E-value: 0.032
       PQQ_2  84 sdgqlialdaedGkrlWstqqrseepaelrssaspavagdtvvvgessgklvaldpkd 141
                 +dg+l  l  ed  ++W+   + + + e+rs++ +a +g +v++g+s g+++ ld++d
  KOO24204.1 301 GDGTLKLLQGED--LQWTCLADAQLDGEVRSVTVSA-DGRQVLAGTSLGNIYLLDARD 355
                 555555555443..5899666663333355555544.79**************99987 PP

  == domain 3  score: 9.0 bits;  conditional E-value: 0.00042
       PQQ_2 130 ssgklvaldpkdGkvlWer 148
                 s+g++ ++d+++G +lWe 
  KOO24204.1 447 SDGNVRCYDARTGAPLWEI 465
                 5566666666666666654 PP

  == domain 4  score: 1.7 bits;  conditional E-value: 0.072
       PQQ_2 160 srvgdisgrpvva...egtVyassgqgrllaldlatgr 194
                  r++ i+ +p ++   ++ ++a++ +g++  +dl+t  
  KOO24204.1 609 RRLTHIDLSPPMDgssSDFLLACTASGEVQVWDLRTSA 646
                 36666777777774333378888888887777888776 PP

>> Nup160  Nucleoporin Nup120/160
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.4   0.0      0.01        23     211     268 ..     549     608 ..     541     615 .. 0.77
   2 !   12.1   0.0   2.5e-05     0.055     196     255 ..     593     650 ..     590     676 .. 0.84

  Alignments for each domain:
  == domain 1  score: 3.4 bits;  conditional E-value: 0.01
                 --TT-ECEEEEET.......TTTEEEEEETT-EEEEEETTTTEEEEE.EE--.-SSSTTS- CS
      Nup160 211 sgasvalsldvavavvei..gqtylfalsrdgkLrvWnlltgkclat.idllrdeeaqdes 268
                 +  +++++  +++++v++  g+  l ++   g L+ W+++  ++++   + + ++ ++++ 
  KOO24204.1 549 RVKCFTVKEGAMQSMVQMdrGEYELITADTSGALKFWDTDEEQPVSMmLTWS-PQQDPNKD 608
                 556677777789999999999999*********************9844444.55555554 PP

  == domain 2  score: 12.1 bits;  conditional E-value: 2.5e-05
                 --TTTT.TSS--SS---TT-ECEEEEET.....TTTEEEEEETT-EEEEEETTTTEEEEE CS
      Nup160 196 lsgllglladpsrrksgasvalsldvavavveigqtylfalsrdgkLrvWnlltgkclat 255
                 +s  l+++ + +  k  + ++++l++ ++ +   +++l+a +  g+++vW+l+t  +l+ 
  KOO24204.1 593 VSMMLTWSPQQDPNKDRRLTHIDLSPPMDGS--SSDFLLACTASGEVQVWDLRTSALLSI 650
                 6666778888888888999899999999999..6********************999887 PP

>> Cytochrom_D1  Cytochrome D1 heme domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.0      0.57   1.3e+03     193     215 ..     140     165 ..     126     169 .. 0.73
   2 !   10.6   0.0   6.6e-05      0.15      69     112 ..     317     359 ..     290     386 .. 0.84
   3 ?    0.2   0.0     0.095   2.1e+02      49     136 ..     529     618 ..     520     668 .. 0.69

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 0.57
                   T...EEEEEETTTTEEEEEEE-SSSB CS
  Cytochrom_D1 193 d...kvavvdtkegklvilldvgktp 215
                       k+ v++t++g+l++l  + +++
    KOO24204.1 140 PggaKLCVWHTNTGQLAVLSKTQQRQ 165
                   25559999999999999998887765 PP

  == domain 2  score: 10.6 bits;  conditional E-value: 6.6e-05
                   EEEEEE-SSEEEEEEE--TTSEEEEEEEETTEEEEEETTT--EE CS
  Cytochrom_D1  69 ivaevkiGlnarsvavSqddryvivgnYlPgqlvildaetLelv 112
                    +a+ ++ ++ rsv vS d+r v++g+ l g++ +lda++L ++
    KOO24204.1 317 CLADAQLDGEVRSVTVSADGRQVLAGTSL-GNIYLLDARDLRPL 359
                   5677778899*****************87.9999*******986 PP

  == domain 3  score: 0.2 bits;  conditional E-value: 0.095
                   EEEEEETTSEEEEEESSSSSEEE..EEE-SSEEEEEEE--TTSEEEEEEEETTEEEEEETTT--EEEEEE--EE-SSS.S---EEEEEE-S CS
  Cytochrom_D1  49 yvyvigRDgkvtliDLwakeiva..evkiGlnarsvavSqddryvivgnYlPgqlvildaetLelvkvisargltvde.resRVaaivasp 136
                    ++  g D k+  iDL + + v+  +vk G     v++ + + y +  +   g l+  d+++ ++v ++ +   ++d  ++ R + i  sp
    KOO24204.1 529 VIHSCGEDKKIVSIDLDQARRVKcfTVKEGAMQSMVQM-DRGEYELITADTSGALKFWDTDEEQPVSMMLTWSPQQDPnKDRRLTHIDLSP 618
                   56667888888888888888554125666654433333.5678888888888888888888888888877766555543666666665555 PP

>> Hira  TUP1-like enhancer of split
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.1   0.1     0.059   1.3e+02      15      40 ..     234     260 ..     230     280 .. 0.82
   2 !   10.9   0.0   0.00012      0.27      19      43 ..     623     647 ..     619     671 .. 0.89

  Alignments for each domain:
  == domain 1  score: 2.1 bits;  conditional E-value: 0.059
        Hira  15 sfLessg.syLlavtsvgllyvWnvkk 40 
                 +++++sg ++L++ +s+g+l+v+n   
  KOO24204.1 234 AVCNASGtWFLVCGSSAGELCVFNAAA 260
                 55666777***************9754 PP

  == domain 2  score: 10.9 bits;  conditional E-value: 0.00012
        Hira  19 ssgsyLlavtsvgllyvWnvkkkkv 43 
                 ss+++Lla t++g++ vW++++ ++
  KOO24204.1 623 SSSDFLLACTASGEVQVWDLRTSAL 647
                 5779****************88765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (692 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       354  (0.0197445); expected 358.6 (0.02)
Passed bias filter:                      321  (0.017904); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.60u 0.25s 00:00:00.85 Elapsed: 00:00:00.41
# Mc/sec: 5109.92
//
Query:       KOO24205.1  [L=1156]
Description: zinc finger protein 143 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    6.9e-30  101.8  52.0    2.2e-05   24.6   1.4    6.6  6  zf-C2H2        Zinc finger, C2H2 type
    2.4e-23   81.4  47.3    4.7e-06   26.8   0.5    7.1  7  zf-H2C2_2      Zinc-finger double domain
    1.5e-17   62.7  43.0     0.0097   16.7   0.8    7.0  6  zf-C2H2_4      C2H2-type zinc finger
  ------ inclusion threshold ------
      0.025   14.4   3.9       0.77    9.7   0.1    2.7  2  IQ             IQ calmodulin-binding motif
      0.052   13.9  18.1        1.6    9.1   6.8    3.0  3  zf-C2H2_8      C2H2-type zinc ribbon
       0.11   13.0  11.7        4.1    7.9   0.2    4.9  4  zf-met         Zinc-finger of C2H2 type
        4.7    8.0  33.4         12    6.7   0.6    6.6  6  CHORD          CHORD
        5.4    7.1   5.8         63    3.7   0.0    3.5  4  DUF1398        Protein of unknown function (DUF1398)
        9.3    6.3  33.8       0.98    9.5   4.1    4.9  5  SBBP           Beta-propeller repeat


Domain annotation for each model (and alignments):
>> zf-C2H2  Zinc finger, C2H2 type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.6   1.4   1.1e-08   2.2e-05       1      23 []     576     600 ..     576     600 .. 0.96
   2 !   24.6   1.6   1.2e-08   2.3e-05       1      23 []     606     630 ..     606     630 .. 0.95
   3 !   20.2   4.6   2.9e-07   0.00058       1      23 []     636     660 ..     636     660 .. 0.95
   4 !   23.1   2.3   3.3e-08   6.6e-05       1      23 []     666     690 ..     666     690 .. 0.99
   5 !   16.7   2.7   3.8e-06    0.0075       1      23 []     696     720 ..     696     720 .. 0.96
   6 !   21.9   1.9   8.4e-08   0.00017       1      23 []     726     752 ..     726     752 .. 0.92

  Alignments for each domain:
  == domain 1  score: 24.6 bits;  conditional E-value: 1.1e-08
                 EEET..TTTEEESSHHHHHHHHHCC CS
     zf-C2H2   1 ykCp..dCgksFkrksnLkrHirtH 23 
                 y C+  +Cgk+F+++s+L++Hir+H
  KOO24205.1 576 YACDhdGCGKRFSDPSHLTAHIRSH 600
                 789999******************9 PP

  == domain 2  score: 24.6 bits;  conditional E-value: 1.2e-08
                 EEET..TTTEEESSHHHHHHHHHCC CS
     zf-C2H2   1 ykCp..dCgksFkrksnLkrHirtH 23 
                 + C+  +Cgk+F+++s+L++HirtH
  KOO24205.1 606 FACDyeGCGKRFTQSSHLTTHIRTH 630
                 679999******************9 PP

  == domain 3  score: 20.2 bits;  conditional E-value: 2.9e-07
                 EEET..TTTEEESSHHHHHHHHHCC CS
     zf-C2H2   1 ykCp..dCgksFkrksnLkrHirtH 23 
                 + C+  +Cgk+F+r+s+L++H rtH
  KOO24205.1 636 FACDheGCGKRFSRSSHLTTHKRTH 660
                 679999******************9 PP

  == domain 4  score: 23.1 bits;  conditional E-value: 3.3e-08
                 EEET..TTTEEESSHHHHHHHHHCC CS
     zf-C2H2   1 ykCp..dCgksFkrksnLkrHirtH 23 
                 y+C+  +Cg++F+r++nL+rH rtH
  KOO24205.1 666 YTCDheGCGERFSRSDNLTRHKRTH 690
                 99**********************9 PP

  == domain 5  score: 16.7 bits;  conditional E-value: 3.8e-06
                 EEET..TTTEEESSHHHHHHHHHCC CS
     zf-C2H2   1 ykCp..dCgksFkrksnLkrHirtH 23 
                 y C+  +C+++F+r+ +L++H rtH
  KOO24205.1 696 YACDheGCSERFSRSGHLTAHKRTH 720
                 789999******************9 PP

  == domain 6  score: 21.9 bits;  conditional E-value: 8.4e-08
                 EEET..TTTEEESSHHHHHHHHHC..C CS
     zf-C2H2   1 ykCp..dCgksFkrksnLkrHirt..H 23 
                 + C+  +Cgk+F+r+ +Lk+H+rt  H
  KOO24205.1 726 FACNheGCGKRFSRSGSLKSHMRTssH 752
                 679999*****************9777 PP

>> zf-H2C2_2  Zinc-finger double domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.5   0.1      0.11   2.2e+02      11      25 ..     572     588 ..     563     589 .. 0.85
   2 !   26.8   0.5   2.4e-09   4.7e-06       1      25 [.     592     618 ..     592     619 .. 0.92
   3 !   18.0   1.6   1.4e-06    0.0028       1      25 [.     622     648 ..     622     649 .. 0.92
   4 !   17.7   2.2   1.8e-06    0.0036       1      25 [.     652     678 ..     652     679 .. 0.90
   5 !   24.3   1.5   1.4e-08   2.8e-05       1      25 [.     682     708 ..     682     709 .. 0.91
   6 !   20.6   3.0   2.1e-07   0.00041       1      25 [.     712     738 ..     712     739 .. 0.92
   7 ?   -1.0   0.4       1.5   2.9e+03       1      11 [.     742     753 ..     742     766 .. 0.76

  Alignments for each domain:
  == domain 1  score: 2.5 bits;  conditional E-value: 0.11
   zf-H2C2_2  11 gekpyeCp..lCdkaFk 25 
                 g+ py C+   C+k+F+
  KOO24205.1 572 GDQPYACDhdGCGKRFS 588
                 778*****988****96 PP

  == domain 2  score: 26.8 bits;  conditional E-value: 2.4e-09
   zf-H2C2_2   1 nLrrHirkHtgekpyeCp..lCdkaFk 25 
                 +L+ Hir+Htge+p+ C+   C+k+F+
  KOO24205.1 592 HLTAHIRSHTGERPFACDyeGCGKRFT 618
                 799***************866*****8 PP

  == domain 3  score: 18.0 bits;  conditional E-value: 1.4e-06
   zf-H2C2_2   1 nLrrHirkHtgekpyeCp..lCdkaFk 25 
                 +L+ Hir+Ht ++p+ C+   C+k+F+
  KOO24205.1 622 HLTTHIRTHTDDRPFACDheGCGKRFS 648
                 6999**************977*****8 PP

  == domain 4  score: 17.7 bits;  conditional E-value: 1.8e-06
   zf-H2C2_2   1 nLrrHirkHtgekpyeCp..lCdkaFk 25 
                 +L+ H r+Htg+ py+C+   C+ +F+
  KOO24205.1 652 HLTTHKRTHTGDQPYTCDheGCGERFS 678
                 6999**************877999997 PP

  == domain 5  score: 24.3 bits;  conditional E-value: 1.4e-08
   zf-H2C2_2   1 nLrrHirkHtgekpyeCp..lCdkaFk 25 
                 nL+rH r+Htge+py C+   C+ +F+
  KOO24205.1 682 NLTRHKRTHTGERPYACDheGCSERFS 708
                 8*****************866999987 PP

  == domain 6  score: 20.6 bits;  conditional E-value: 2.1e-07
   zf-H2C2_2   1 nLrrHirkHtgekpyeCp..lCdkaFk 25 
                 +L+ H r+Htge+p+ C    C+k+F+
  KOO24205.1 712 HLTAHKRTHTGERPFACNheGCGKRFS 738
                 799***************977*****7 PP

  == domain 7  score: -1.0 bits;  conditional E-value: 1.5
   zf-H2C2_2   1 nLrrHirk.Htg 11 
                 +L+ H+r+  +g
  KOO24205.1 742 SLKSHMRTsSHG 753
                 5999**954555 PP

>> zf-C2H2_4  C2H2-type zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.8   4.9e-06    0.0097       1      23 [.     576     600 ..     576     601 .. 0.96
   2 !   15.2   1.0   1.5e-05      0.03       1      23 [.     606     630 ..     606     631 .. 0.95
   3 !   13.5   3.1   4.9e-05     0.099       1      23 [.     636     660 ..     636     661 .. 0.95
   4 !   15.6   1.1   1.1e-05     0.022       1      23 [.     666     690 ..     666     691 .. 0.96
   5 !   11.9   1.8   0.00017      0.33       1      23 [.     696     720 ..     696     721 .. 0.95
   6 !   15.6   0.6   1.1e-05     0.022       1      22 [.     726     749 ..     726     751 .. 0.93

  Alignments for each domain:
  == domain 1  score: 16.7 bits;  conditional E-value: 4.9e-06
   zf-C2H2_4   1 fkCpi..CgksFsskkaLlrHlkth 23 
                 + C++  Cgk+Fs++++L  H+++h
  KOO24205.1 576 YACDHdgCGKRFSDPSHLTAHIRSH 600
                 78**********************9 PP

  == domain 2  score: 15.2 bits;  conditional E-value: 1.5e-05
   zf-C2H2_4   1 fkCpi..CgksFsskkaLlrHlkth 23 
                 f C++  Cgk+F+ +++L +H++th
  KOO24205.1 606 FACDYegCGKRFTQSSHLTTHIRTH 630
                 78**********99999*******9 PP

  == domain 3  score: 13.5 bits;  conditional E-value: 4.9e-05
   zf-C2H2_4   1 fkCpi..CgksFsskkaLlrHlkth 23 
                 f C++  Cgk+Fs++++L +H +th
  KOO24205.1 636 FACDHegCGKRFSRSSHLTTHKRTH 660
                 78**********************9 PP

  == domain 4  score: 15.6 bits;  conditional E-value: 1.1e-05
   zf-C2H2_4   1 fkCpi..CgksFsskkaLlrHlkth 23 
                 ++C++  Cg++Fs++++L rH +th
  KOO24205.1 666 YTCDHegCGERFSRSDNLTRHKRTH 690
                 89**********************9 PP

  == domain 5  score: 11.9 bits;  conditional E-value: 0.00017
   zf-C2H2_4   1 fkCpi..CgksFsskkaLlrHlkth 23 
                 + C++  C+++Fs++ +L  H +th
  KOO24205.1 696 YACDHegCSERFSRSGHLTAHKRTH 720
                 78**********************9 PP

  == domain 6  score: 15.6 bits;  conditional E-value: 1.1e-05
   zf-C2H2_4   1 fkCpi..CgksFsskkaLlrHlkt 22 
                 f C +  Cgk+Fs++ +L++H++t
  KOO24205.1 726 FACNHegCGKRFSRSGSLKSHMRT 749
                 7899999***************98 PP

>> IQ  IQ calmodulin-binding motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   0.1   0.00039      0.77       2      19 ..      77      94 ..      76      96 .. 0.91
   2 ?    4.7   1.1     0.016        32       1      18 [.      99     116 ..      99     118 .. 0.91

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 0.00039
                HHHHHHHHHHHHHHHHHH CS
          IQ  2 kaaikIQaawRGylaRkr 19
                +aa++IQ++  G  +Rk 
  KOO24205.1 77 RAAMVIQSHLLGVHCRKT 94
                8***************96 PP

  == domain 2  score: 4.7 bits;  conditional E-value: 0.016
                 HHHHHHHHHHHHHHHHHH CS
          IQ   1 rkaaikIQaawRGylaRk 18 
                 +++a++I a wR+++ R+
  KOO24205.1  99 HASATVITASWRRWWERR 116
                 679*************98 PP

>> zf-C2H2_8  C2H2-type zinc ribbon
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.0   3.4   0.00082       1.6       2      85 ..     578     656 ..     575     665 .. 0.75
   2 ?    3.5   2.1     0.043        85       5      62 ..     641     692 ..     637     700 .. 0.61
   3 ?    9.1   6.8   0.00078       1.6       2      91 ..     668     752 ..     667     760 .. 0.76

  Alignments for each domain:
  == domain 1  score: 9.0 bits;  conditional E-value: 0.00082
   zf-C2H2_8   2 cssygcrlafpnvrelaqhlrvhlsptqslegklfrcstascaetfpsmqelvahtklhykpnryfkc..encllrfrthrslfkh 85 
                 c   gc   f ++ +l+ h+r+h         + f c    c + f     l +h + h   +r f c  e c  rf     l  h
  KOO24205.1 578 CDHDGCGKRFSDPSHLTAHIRSHTG------ERPFACDYEGCGKRFTQSSHLTTHIRTHT-DDRPFACdhEGCGKRFSRSSHLTTH 656
                 7777888888888777766666543......356***********************997.5799999555799999765555444 PP

  == domain 2  score: 3.5 bits;  conditional E-value: 0.043
   zf-C2H2_8   5 ygcrlafpnvrelaqhlrvhlsptqslegklfrcstascaetfpsmqelvahtklhyk 62 
                  gc   f  +     hl++h + +     + + c    c e f   ++l  h + h  
  KOO24205.1 641 EGCGKRFSRSS----HLTTHKRTHT--GDQPYTCDHEGCGERFSRSDNLTRHKRTHTG 692
                 55555554443....4444433332..2356889999999999999999999888853 PP

  == domain 3  score: 9.1 bits;  conditional E-value: 0.00078
   zf-C2H2_8   2 cssygcrlafpnvrelaqhlrvhlsptqslegklfrcstascaetfpsmqelvahtklhykpnryfkc..encllrfrthrslfkhlhvcsd 91 
                 c   gc   f  + +l++h r+h         + + c    c+e f     l ah + h   +r f c  e c  rf    sl  h+   s+
  KOO24205.1 668 CDHEGCGERFSRSDNLTRHKRTHTG------ERPYACDHEGCSERFSRSGHLTAHKRTHT-GERPFACnhEGCGKRFSRSGSLKSHMRTSSH 752
                 5566666666666666666665542......35689*******************99996.68999995568**************998775 PP

>> zf-met  Zinc-finger of C2H2 type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.6   0.1    0.0025         5       6      23 ..     583     600 ..     582     601 .. 0.95
   2 ?    0.5   0.2      0.46   9.1e+02       6      21 ..     613     628 ..     611     631 .. 0.89
   3 ?    0.7   0.3      0.38   7.6e+02       6      21 ..     643     658 ..     641     661 .. 0.88
   4 ?    7.9   0.2    0.0021       4.1       6      22 ..     733     749 ..     731     752 .. 0.89

  Alignments for each domain:
  == domain 1  score: 7.6 bits;  conditional E-value: 0.0025
      zf-met   6 CnvtfnsesqlksHlqGK 23 
                 C ++f+++s+l +H +++
  KOO24205.1 583 CGKRFSDPSHLTAHIRSH 600
                 99**************98 PP

  == domain 2  score: 0.5 bits;  conditional E-value: 0.46
      zf-met   6 CnvtfnsesqlksHlq 21 
                 C ++f+  s+l +H +
  KOO24205.1 613 CGKRFTQSSHLTTHIR 628
                 99************87 PP

  == domain 3  score: 0.7 bits;  conditional E-value: 0.38
      zf-met   6 CnvtfnsesqlksHlq 21 
                 C ++f+  s+l +H +
  KOO24205.1 643 CGKRFSRSSHLTTHKR 658
                 99*********99976 PP

  == domain 4  score: 7.9 bits;  conditional E-value: 0.0021
      zf-met   6 CnvtfnsesqlksHlqG 22 
                 C ++f+  ++lksH++ 
  KOO24205.1 733 CGKRFSRSGSLKSHMRT 749
                 9**************85 PP

>> CHORD  CHORD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.1   0.2    0.0092        18       2      29 ..     577     603 ..     576     607 .. 0.80
   2 ?    3.9   0.4     0.046        91       2      25 ..     607     629 ..     606     636 .. 0.74
   3 ?    5.5   0.8     0.015        29       2      26 ..     637     660 ..     636     667 .. 0.73
   4 ?    6.7   0.6    0.0059        12       2      26 ..     667     690 ..     666     696 .. 0.77
   5 ?    3.0   0.6     0.086   1.7e+02       2      26 ..     697     720 ..     696     727 .. 0.71
   6 ?    4.3   1.0     0.034        68       2      17 ..     727     742 ..     726     761 .. 0.76

  Alignments for each domain:
  == domain 1  score: 6.1 bits;  conditional E-value: 0.0092
                 E--SBTT--EE-STT--TT-.EEEB--- CS
       CHORD   2 kCknkGCgkkfeeeeneeeaeCtyHpga 29 
                  C + GCgk+f++ ++ +++  + H+g+
  KOO24205.1 577 ACDHDGCGKRFSDPSHLTAH-IRSHTGE 603
                 6***********98887665.8888876 PP

  == domain 2  score: 3.9 bits;  conditional E-value: 0.046
                 E--SBTT--EE-STT--TT-.EEE CS
       CHORD   2 kCknkGCgkkfeeeeneeeaeCty 25 
                  C  +GCgk+f+++++ +++  + 
  KOO24205.1 607 ACDYEGCGKRFTQSSHLTTH-IRT 629
                 69**********98877665.444 PP

  == domain 3  score: 5.5 bits;  conditional E-value: 0.015
                 E--SBTT--EE-STT--TT-.EEEB CS
       CHORD   2 kCknkGCgkkfeeeeneeeaeCtyH 26 
                  C ++GCgk+f+ +++ +++  + H
  KOO24205.1 637 ACDHEGCGKRFSRSSHLTTH-KRTH 660
                 6***********88876665.3334 PP

  == domain 4  score: 6.7 bits;  conditional E-value: 0.0059
                 E--SBTT--EE-STT--TT-.EEEB CS
       CHORD   2 kCknkGCgkkfeeeeneeeaeCtyH 26 
                 +C ++GCg++f+ ++n +++  + H
  KOO24205.1 667 TCDHEGCGERFSRSDNLTRH-KRTH 690
                 7***********99998765.3444 PP

  == domain 5  score: 3.0 bits;  conditional E-value: 0.086
                 E--SBTT--EE-STT--TT-.EEEB CS
       CHORD   2 kCknkGCgkkfeeeeneeeaeCtyH 26 
                  C ++GC+++f+ + + +++  + H
  KOO24205.1 697 ACDHEGCSERFSRSGHLTAH-KRTH 720
                 6**********987765554.3444 PP

  == domain 6  score: 4.3 bits;  conditional E-value: 0.034
                 E--SBTT--EE-STT- CS
       CHORD   2 kCknkGCgkkfeeeen 17 
                  C+++GCgk+f+ + +
  KOO24205.1 727 ACNHEGCGKRFSRSGS 742
                 6**********97655 PP

>> DUF1398  Protein of unknown function (DUF1398)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.7   0.0     0.032        63      75      99 ..     184     208 ..     179     212 .. 0.89
   2 ?   -0.2   0.0      0.48   9.6e+02      83     107 ..     318     342 ..     314     345 .. 0.88
   3 ?   -3.0   0.2       3.8   7.5e+03      84     100 ..     380     396 ..     378     404 .. 0.78
   4 ?    3.6   0.0     0.033        65      75      99 ..     433     457 ..     428     461 .. 0.89

  Alignments for each domain:
  == domain 1  score: 3.7 bits;  conditional E-value: 0.032
                 HHT---HHHHHHHHHHTT--EEEEE CS
     DUF1398  75 qqgettfetfcedlAkaGvekWivd 99 
                   g+t+ + f+ ++ +aGv+ W+v+
  KOO24205.1 184 TNGDTSVDAFVMHVTAAGVVDWAVQ 208
                 67999999**************996 PP

  == domain 2  score: -0.2 bits;  conditional E-value: 0.48
                 HHHHHHHHTT--EEEEETTTTEEEE CS
     DUF1398  83 tfcedlAkaGvekWivdleektrtY 107
                  f+ ++ +aG + W+v+   +  tY
  KOO24205.1 318 AFVMHVTAAGAIDWVVQAGGMDSTY 342
                 5889999*********998888887 PP

  == domain 3  score: -3.0 bits;  conditional E-value: 3.8
                 HHHHHHHTT--EEEEET CS
     DUF1398  84 fcedlAkaGvekWivdl 100
                 f+ ++ +aG + W+v+ 
  KOO24205.1 380 FVMHVTAAGAIDWAVQA 396
                 8889999******9976 PP

  == domain 4  score: 3.6 bits;  conditional E-value: 0.033
                 HHT---HHHHHHHHHHTT--EEEEE CS
     DUF1398  75 qqgettfetfcedlAkaGvekWivd 99 
                  +g+t+ + f+ ++ +aGv+ W+v+
  KOO24205.1 433 TSGDTSADAFVMHVTAAGVVDWAVQ 457
                 68999999**************996 PP

>> SBBP  Beta-propeller repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3   3.8   0.00057       1.1       1      31 [.     142     171 ..     142     171 .. 0.95
   2 ?    4.6   2.0     0.017        33       2      31 ..     205     233 ..     204     233 .. 0.91
   3 ?   -0.9   0.3      0.84   1.7e+03       1      31 [.     330     359 ..     330     359 .. 0.85
   4 ?    9.5   4.1   0.00049      0.98       1      31 [.     391     420 ..     391     420 .. 0.96
   5 ?   -2.6   0.0       2.9   5.8e+03       2      19 ..     454     470 ..     453     470 .. 0.77

  Alignments for each domain:
  == domain 1  score: 9.3 bits;  conditional E-value: 0.00057
        SBBP   1 qWstqlGgpgastygngIavDsnGNiYvtGs 31 
                 +W  q Gg ++ tyg+gIa D  G + vtG+
  KOO24205.1 142 DWAVQAGGKDT-TYGRGIANDGGGGALVTGY 171
                 5999***9999.99****************8 PP

  == domain 2  score: 4.6 bits;  conditional E-value: 0.017
        SBBP   2 WstqlGgpgastygngIavDsnGNiYvtGs 31 
                 W  q Gg+ +  +g g+a D  G + vtG+
  KOO24205.1 205 WAVQAGGTAD-SWGFGVAYDGAGGALVTGD 233
                 9999998888.99****************5 PP

  == domain 3  score: -0.9 bits;  conditional E-value: 0.84
        SBBP   1 qWstqlGgpgastygngIavDsnGNiYvtGs 31 
                 +W+ q Gg ++ ty++ Ia D  G +  tG+
  KOO24205.1 330 DWVVQAGGMDS-TYARCIANDGGGGALATGT 359
                 59999999888.9999999999888888886 PP

  == domain 4  score: 9.5 bits;  conditional E-value: 0.00049
        SBBP   1 qWstqlGgpgastygngIavDsnGNiYvtGs 31 
                 +W  q Gg+++ ty+++Ia D  G + vtG+
  KOO24205.1 391 DWAVQAGGTDY-TYARSIANDGGGGALVTGY 420
                 59*********.99****************8 PP

  == domain 5  score: -2.6 bits;  conditional E-value: 2.9
        SBBP   2 WstqlGgpgastygngIa 19 
                 W  q Gg+ +  +g+g+a
  KOO24205.1 454 WAVQAGGTAD-SFGSGVA 470
                 9999997777.7788876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1156 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       392  (0.021864); expected 358.6 (0.02)
Passed bias filter:                      254  (0.014167); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                        15  (0.000836633); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.74u 0.31s 00:00:01.05 Elapsed: 00:00:00.51
# Mc/sec: 6764.40
//
Query:       KOO24206.1  [L=218]
Description: hypothetical protein Ctob_003017 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
     0.0045   16.9   3.3        0.8    9.6   0.2    3.2  4  TRI9          TRI9 protein
  ------ inclusion threshold ------
       0.12   12.0   1.2         28    4.3   0.0    3.2  4  Luteo_PO      Luteovirus P0 protein


Domain annotation for each model (and alignments):
>> TRI9  TRI9 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.2   0.0    0.0011       9.6      15      37 ..      95     117 ..      87     119 .. 0.92
   2 ?   -2.4   0.0      0.53   4.8e+03      18      33 ..     128     143 ..     127     145 .. 0.85
   3 !    9.6   0.2     9e-05       0.8       9      38 ..     149     178 ..     141     181 .. 0.84
   4 ?   -1.3   0.1      0.23   2.1e+03      16      38 ..     186     208 ..     184     210 .. 0.76

  Alignments for each domain:
  == domain 1  score: 6.2 bits;  conditional E-value: 0.0011
        TRI9  15 PDvsWLevFaYsGvsaaLCatiW 37 
                 P  sWL     s v   LCa  W
  KOO24206.1  95 PQPSWLQANGRSPVCVRLCAVRW 117
                 778*****************998 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 0.53
        TRI9  18 sWLevFaYsGvsaaLC 33 
                 sW   +  s v   LC
  KOO24206.1 128 SWSQAYGRSPVCVRLC 143
                 8888899999999999 PP

  == domain 3  score: 9.6 bits;  conditional E-value: 9e-05
        TRI9   9 DsYemDPDvsWLevFaYsGvsaaLCatiWv 38 
                 D     P  sW  v+ +s v   LC   W 
  KOO24206.1 149 DREKRSPQPSWSQVYGWSPVCVRLCVVRWL 178
                 555667999****************99995 PP

  == domain 4  score: -1.3 bits;  conditional E-value: 0.23
        TRI9  16 DvsWLevFaYsGvsaaLCatiWv 38 
                   sW      s v   +C   W 
  KOO24206.1 186 QPSWSQANGRSSVCVRICVVRWL 208
                 56788888888888889988885 PP

>> Luteo_PO  Luteovirus P0 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.3   0.0    0.0031        28     137     168 ..      80     111 ..      70     116 .. 0.85
   2 ?   -0.2   0.1     0.073   6.5e+02     141     170 ..     114     143 ..     109     151 .. 0.79
   3 ?    2.3   0.1     0.013   1.2e+02     141     168 ..     144     171 ..     140     178 .. 0.80
   4 ?    2.2   0.1     0.014   1.3e+02     144     169 ..     177     202 ..     170     213 .. 0.81

  Alignments for each domain:
  == domain 1  score: 4.3 bits;  conditional E-value: 0.0031
    Luteo_PO 137 krflsvwlrdierslpespkespvgdstvldl 168
                 +r+   +l d+e++lp++++ ++ g+s+v ++
  KOO24206.1  80 VRICDLRLPDREKRLPQPSWLQANGRSPVCVR 111
                 68888999****************99987665 PP

  == domain 2  score: -0.2 bits;  conditional E-value: 0.073
    Luteo_PO 141 svwlrdierslpespkespvgdstvldlan 170
                  v+  d+e+++ ++++ ++ g+s+v ++  
  KOO24206.1 114 AVRWPDREKRSLQPSWSQAYGRSPVCVRLC 143
                 5666789999********999998776654 PP

  == domain 3  score: 2.3 bits;  conditional E-value: 0.013
    Luteo_PO 141 svwlrdierslpespkespvgdstvldl 168
                  v+l+d+e+++p++++ +  g s+v ++
  KOO24206.1 144 LVRLSDREKRSPQPSWSQVYGWSPVCVR 171
                 689**************99987766554 PP

  == domain 4  score: 2.2 bits;  conditional E-value: 0.014
    Luteo_PO 144 lrdierslpespkespvgdstvldla 169
                   d+e++lp++++ ++ g+s v +++
  KOO24206.1 177 WLDREKRLPQPSWSQANGRSSVCVRI 202
                 55899************999888776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (218 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       273  (0.0152267); expected 358.6 (0.02)
Passed bias filter:                      174  (0.00970495); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.39u 0.28s 00:00:00.67 Elapsed: 00:00:00.42
# Mc/sec: 1548.29
//
Query:       KOO24207.1  [L=231]
Description: set domain protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.8e-10   40.8   0.0    1.4e-09   38.6   0.0    1.9  1  SET       SET domain
  ------ inclusion threshold ------
      0.057   13.1   0.0       0.44   10.3   0.0    2.3  2  DUF3665   Branched-chain amino acid aminotransferase


Domain annotation for each model (and alignments):
>> SET  SET domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.6   0.0   1.6e-13   1.4e-09       1     169 []      15     114 ..      15     114 .. 0.90

  Alignments for each domain:
  == domain 1  score: 38.6 bits;  conditional E-value: 1.6e-13
                 SCEEEESSXBXTTXEEEEEEECCEECHHHHHHHHHH..HTEEEEEXGGXXGGSXHHHHHHHTTSSHHHHHHHHHHHHHHHHHHTHHHHHHHXTTTSXXX CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
         SET   1 GrGvfAtedIpkgeficeypeeiiltkdeadksele..aylfslpeapknlaftkelakasastllqklakdqkqaekedtdaalkasskaesdlnask 97 
                 G+G fA ed ++++++c+y+ e+i   + ++k  ++  +ylf++                                                       
  KOO24207.1  15 GMGCFAAEDGAADTWVCQYVGEPITLLESTHKYADKdpQYLFQIT------------------------------------------------------ 59 
                 89******************6667777777777766799999976...................................................... PP

                 HCCCCCHCCCHEEEETEEEEEECCCGTTGGGCEEXSSSSEEEEEEEETTSSEEEEEESSXBXTTEEEEEXTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
         SET  98 peagafsaiagysidaralksgngagplarflNHsCdpNcnltvqnvlrgprvavfAtrdIkkGeEltidYg 169
                            +++d  a++s++++    rf+NH    N+++tv++  +  rv +  +rd+++G++l +dYg
  KOO24207.1  60 ---------PDLYLD--AEESTHHS----RFFNHAQFANLKFTVDV--QRQRVDFWLQRDVRAGDQLMFDYG 114
                 .........67899*..88******....******999********..9**********************8 PP

>> DUF3665  Branched-chain amino acid aminotransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.4   0.0      0.11   9.6e+02       1       5 [.      84      88 ..      84      89 .. 0.89
   2 ?   10.3   0.0   4.9e-05      0.44      10      22 .]     151     163 ..     151     163 .. 0.96

  Alignments for each domain:
  == domain 1  score: -0.4 bits;  conditional E-value: 0.11
     DUF3665  1 LnFtV 5 
                L+FtV
  KOO24207.1 84 LKFTV 88
                89*** PP

  == domain 2  score: 10.3 bits;  conditional E-value: 4.9e-05
     DUF3665  10 nPTSPErLaEILA 22 
                 +PTSP  LaE LA
  KOO24207.1 151 TPTSPVQLAEVLA 163
                 7***********9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (231 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       277  (0.0154498); expected 358.6 (0.02)
Passed bias filter:                      257  (0.0143343); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.40u 0.27s 00:00:00.67 Elapsed: 00:00:00.42
# Mc/sec: 1638.15
//
Query:       KOO24208.1  [L=301]
Description: hypothetical protein Ctob_003019 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    7.4e-24   84.6   0.7    9.3e-24   84.3   0.7    1.1  1  NmrA            NmrA-like family
    1.7e-12   47.6   0.1    2.8e-12   46.9   0.1    1.4  1  NAD_binding_10  NAD(P)H-binding
     0.0085   15.6   0.1      0.012   15.0   0.1    1.3  1  Epimerase       NAD dependent epimerase/dehydratase family


Domain annotation for each model (and alignments):
>> NmrA  NmrA-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   84.3   0.7   1.5e-27   9.3e-24       1     230 [.       7     236 ..       7     238 .. 0.87

  Alignments for each domain:
  == domain 1  score: 84.3 bits;  conditional E-value: 1.5e-27
                 EEESSTTSHHHHHHHHHHHHHT-EEEEEES-S-SHHHHHHHHSTTEEEES-TT-HHHHHHHHT..T-SEEEE---GG.......S-HHHHHHHHHHHHH CS
        NmrA   1 IlviGaTGrqGksvvrallkaghkvralvRdtkselakslkeaGvelvkgdlddkeslvealk..gvdvvfsvtgfy.......skeiedgkklvdAak 90 
                 +lv+ aTG+ G+ ++ al +ag++v+  +R  k++    l+++G + v ++   ++ +++a+k  g++ v+  t f+         ei+ g++  +A k
  KOO24208.1   7 VLVLQATGKAGRNIALALKNAGFEVFGTTRSAKNN----LASKGITPVIANYTVQADIDRAIKesGAKKVIGITDFFkaaksrgAVEIAHGQAQFEACK 101
                 79****************************99865....6788999999999999999999984468899999999899999999************** PP

                 HHS-SEEEEEE---GG.GT.SSS---.TTTHHHHHHHHHHHHCTS-EEEEEE-EEGGG-BSSS-SS-BEEE-TTS.-EEEEESS-TTS-EE.-HHHHHH CS
        NmrA  91 eaGvkhfiySslgddndrsnaeepav.phfdsKaeieeyvralgipytfvyagffmenflsllaqlkvgdtappedkvtllgpgnpkavll.daeeDiG 187
                 + Gv h+i+ s+++++d+    +pav +h ++Kae e+ ++a+gip++++++ +f enf   +     + +++++ k +l++   p +++  +++ D+G
  KOO24208.1 102 AGGVAHYIFVSVVQASDIA---WPAVcKHISTKAEMEKNLKASGIPHSILRPCVFFENFDDAANY---NPLKKGAVK-FLSKCVTPTGAYKwVSTYDVG 193
                 **************99777...99874799*****************************995444...334444433.444444555555557****** PP

                 HHHHHHHHHHHHHTTEEEEE-SEEE-HHHHHHHHHHHHTS-EE CS
        NmrA 188 afvikilkdprklkgkriklagntlsgneivelfekkigktvk 230
                 ++ ++ +kdp+k+ g  ++  +   s+++++++++ + g +vk
  KOO24208.1 194 RAAAAHFKDPAKYLGTTLECMSWQGSLDDVARALQTVSGVPVK 236
                 ***********************************99999886 PP

>> NAD_binding_10  NAD(P)H-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.9   0.1   4.7e-16   2.8e-12       2     161 ..      12     170 ..      12     203 .. 0.75

  Alignments for each domain:
  == domain 1  score: 46.9 bits;  conditional E-value: 4.7e-16
                     TTSHHHHHHHHHHHHC-T-EEEEEETTHHHCHHHHCTTTCEEEE--TT-CCHHHHHHT..T-SEEEES-.....--TCCHHHH......HHHHHH CS
  NAD_binding_10   2 AtGkvGrllvkellargghevtalvRnpeklaeleaeeglevvegdvtdvedlaealk..gadaVvsal.....ggggkdeeg......aknivd 83 
                     AtGk Gr ++  l ++ g+ev   +R+++    l+ ++g++ v ++ t ++d+ +a+k  ga  V+  +     +    +++g       ++  +
      KOO24208.1  12 ATGKAGRNIALALKNA-GFEVFGTTRSAKNN--LA-SKGITPVIANYTVQADIDRAIKesGAKKVIGITdffkaA----KSRGaveiahGQAQFE 98 
                     9**********99999.5***9999998774..43.69*******************966777798888655431....333322334577789* PP

                     HHHHCT--EEEEEEETTTTSGCGCHHHHHHHHCCHHHHHHHHHHHHHHHHSSSEEEEEEE-CEE-S..T--SEEEEETTS CS
  NAD_binding_10  84 aakeagvkRfvlvsaigvgdevpgefgewnkellkaylaakraaeellrasgldwTivrpggLtde..pttkyrvvekge 161
                     a+k+ gv ++++vs +++ d        w   ++ + +  k+++e+ l+asg+   i+rp  + ++  ++ +y+ ++kg 
      KOO24208.1  99 ACKAGGVAHYIFVSVVQASDI-----A-W--PAVCKHISTKAEMEKNLKASGIPHSILRPCVFFENfdDAANYNPLKKGA 170
                     ******************962.....2.2..233455789********************99976542588898887765 PP

>> Epimerase  NAD dependent epimerase/dehydratase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.1   2.1e-06     0.012       2      70 ..       8      74 ..       7     115 .. 0.82

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 2.1e-06
                EEETTTSHHHHHHHHHHHHCTSEEEEEES-STTTTCHHCHHCEEEE--TT-HHHHHHHHHHHT-SEEEE CS
   Epimerase  2 lVtGatGfiGsalvkallekgyevigldrlssasntarledlelveldltdrsalerlfkeeqpdavih 70
                lV+ atG  G++++ al+++g ev g +r   a+n+ + + ++ v +++t +++++r++ke ++  vi 
  KOO24208.1  8 LVLQATGKAGRNIALALKNAGFEVFGTTRS--AKNNLASKGITPVIANYTVQADIDRAIKESGAKKVIG 74
                677799************************..6777777778******************999888875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (301 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       389  (0.0216967); expected 358.6 (0.02)
Passed bias filter:                      355  (0.0198003); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.44u 0.27s 00:00:00.71 Elapsed: 00:00:00.42
# Mc/sec: 2172.24
//
Query:       KOO24209.1  [L=658]
Description: chloride channel protein, partial [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    4.5e-48  164.3  37.9      7e-33  114.3  21.3    2.6  3  Voltage_CLC  Voltage gated chloride channel


Domain annotation for each model (and alignments):
>> Voltage_CLC  Voltage gated chloride channel
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.1      0.11   2.1e+03     161     217 ..      57     120 ..      33     127 .. 0.52
   2 !   58.6   5.0   3.4e-20     6e-16      38     118 ..     140     217 ..     131     227 .. 0.90
   3 !  114.3  21.3   3.9e-37     7e-33     126     352 ..     365     616 ..     355     618 .. 0.87

  Alignments for each domain:
  == domain 1  score: -2.3 bits;  conditional E-value: 0.11
                  GGGHHHHHHHHHHHHHHHHHHHHHHHHHHH........HHHCHHCHHHH..HHHHHHHHHHHHHHHC CS
  Voltage_CLC 161 llelilfvllGilgGllgalfvrlllkver........lfrkleklkik..krlepalvgllvgllg 217
                     l+ +v+lG+l G+  a+       +e         +++ l         ++ p+l+gl+vg+l 
   KOO24209.1  57 STLLPRAVALGCLTGVGVACLKLGIEGIEPivlnpnafWIQALP---PEviSVATPMLGGLAVGVLR 120
                  55566666666666655554444444444333333332222221...11212446666666666665 PP

  == domain 2  score: 58.6 bits;  conditional E-value: 3.4e-20
                  HHHHHHHHHHHHHHHCTT-S-BTHHHHHHHHHHHHHHHHHHTT.--SHHHHHHHHHHHHHHHHHHHT-HHHHHHHHCTTTS CS
  Voltage_CLC  38 lrvllvkflasvltvgsGlslGreGplvqiGAavgsglsrllklsrndrdrrlvaaGaAAGiAAaFnaPlgGvlfalEevs 118
                   r  ++++ a + t+g+G slG eGp+v iG  +++ +   l+   ++rd +lvaaG+A+G+AA F+aP++G++fa+E v+
   KOO24209.1 140 SRRGVARASAAAATLGTGNSLGPEGPAVDIGRGIAARIFGGLC---EERDTILVAAGVASGVAAGFSAPIAGIVFACETVA 217
                  56778899999********************999999988888...455789**************************987 PP

  == domain 3  score: 114.3 bits;  conditional E-value: 3.9e-37
                  HHHHHHHHHHHHHHHHHHCTTS-S-.T---....--GGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHH.CHHHH.HHH.HHHHHHHHHHHHCCC CS
  Voltage_CLC 126 llpvfvasvvaalvlrlllgeepafgeveslf.alsllelilfvllGilgGllgalfvrlllkverlfrkle.klkik.krl.epalvgllvgllgll 219
                  + +v +++ +aalv++++l+    ++  ++++ + +lle+++++ lG+l+G+l++l  +  +++++++ +     + + + l +p++++++vg++g++
   KOO24209.1 365 VAAVALSASCAALVSEAILQGSLRLQ-SPEFTlESPLLEMPFYLGLGVLAGALAILVREARTTSLSVWSDEGaIGS-SvPLLlRPMAAAAVVGSIGIA 460
                  45677889999999999988887776.44444468******************************99988764333.346666*************** PP

                  SCC.CSSSSCCHHHHHCTT-S-HHHHHH...HHHHHHHHHHHHHCTT-CSBSHHHHHHHHHHHHHHHHHHHHHH-C...................... CS
  Voltage_CLC 220 lpasvlgggyeliasllegstlllsllllllllllkllataltlgsgvpgGifaPsLviGAalGrlvglvlalllp...................... 295
                  +p  +l +gy++++++l+++ +  ++l+ll + +lk+ +ta++lg+g+ gG+faPsL+iGA++G+++  ++a++                        
   KOO24209.1 461 FPR-ILFNGYATLNAILANT-QPEPPLSLLGYSFLKIGTTAFSLGAGLVGGLFAPSLFIGATAGAAFHSLVASATEfaatnlvslqlsldvvpgswgv 556
                  ***.*************885.45566788***************************************99999966788999999999********** PP

                  ....TSSC....HHHHHHCCTHHHHHCCS-HHHHHHHHHHCC-.-GCCHHHHHHHHHHHHHHH CS
  Voltage_CLC 296 ....gaass.dpgafalvGmaaflagvtrapltaiviviEltg.dlelllplmlavliAkava 352
                      +        a+a+vG+aa+l++  r plta v+++Elt+ + +++lp+++a+++A  v 
   KOO24209.1 557 lpilH---VaAAPAYAIVGAAATLGALFRSPLTASVLLLELTQeNPSIFLPTLAAATVAEFVL 616
                  97543...335579*****************************9***************9885 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (658 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       591  (0.0329634); expected 358.6 (0.02)
Passed bias filter:                      364  (0.0203023); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.61u 0.25s 00:00:00.86 Elapsed: 00:00:00.43
# Mc/sec: 4549.52
//
Query:       KOO24210.1  [L=320]
Description: hypothetical protein Ctob_001548 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      1e-47  161.1   1.6    6.7e-47  158.4   0.2    2.1  2  Cyclin_N   Cyclin, N-terminal domain
    5.4e-32  110.4   0.3    9.5e-32  109.6   0.3    1.4  1  Cyclin_C   Cyclin, C-terminal domain
  ------ inclusion threshold ------
      0.033   14.0   0.0      0.065   13.0   0.0    1.4  1  AbiJ_NTD5  AbiJ N-terminal domain 5
      0.037   13.6   0.0      0.087   12.4   0.0    1.6  1  Ndc80_HEC  HEC/Ndc80p family


Domain annotation for each model (and alignments):
>> Cyclin_N  Cyclin, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  158.4   0.2   1.5e-50   6.7e-47       1     127 []      69     195 ..      69     195 .. 0.99
   2 ?    1.9   0.1     0.039   1.7e+02      42      99 ..     210     265 ..     198     288 .. 0.73

  Alignments for each domain:
  == domain 1  score: 158.4 bits;  conditional E-value: 1.5e-50
                 HHHHHHHHHHCHTS-STTCTTCTSSS-HHHHHHHHHHHHHHHHHTT--TTHHHHHHHHHHHHHHHS---CCCHHHHHHHHHHHHHHHHSSS---HHHHH CS
    Cyclin_N   1 dilknlieqelkflpkpdyldqqpelnpemRailidwlvevaekfkltpetlflavnyldRflskksvpkdklqlvgatcLllAaKveeisppkledlv 99 
                 +i+++l+  el+++  p+++++q+++n +mR ilidwlvevae+++l++etl+lavny+dRfls+  v+++klqlvg+tc+l+A+K+eei+pp ++++v
  KOO24210.1  69 EIYSYLRDLELEHRVAPQFMQSQRDINATMRGILIDWLVEVAEEYRLESETLYLAVNYIDRFLSHVPVNRSKLQLVGVTCMLVASKYEEIHPPAVDEFV 167
                 79************************************************************************************************* PP

                 HHTTTSS-HHHHHHHHHHHHHHTTT--- CS
    Cyclin_N 100 yitdeafteeeilemErliLetLnfdls 127
                 yi+d+++++eeil mE  +L+ Lnf+ls
  KOO24210.1 168 YISDNTYKREEILHMEGMVLNRLNFELS 195
                 *************************995 PP

  == domain 2  score: 1.9 bits;  conditional E-value: 0.039
                 HHHTT--TTHHHHHHHHHHHHHHHS---CCCHHHHHHHHHHHHHHHHSSS---HHHHH CS
    Cyclin_N  42 aekfkltpetlflavnyldRflskksvpkdklqlvgatcLllAaKveeisppkledlv 99 
                 a+  ++++ t +l+  + +  l++ s+ k++   v+a++L lA  +  ++ p +  l 
  KOO24210.1 210 ARAGECDSTTEMLCKYLTELTLQEYSFVKYRPSEVAAAALRLALHT--MRLPAWTPLL 265
                 556677888888888888888999999999***********99766..4445555554 PP

>> Cyclin_C  Cyclin, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  109.6   0.3   2.1e-35   9.5e-32       2     118 ..     198     315 ..     197     316 .. 0.95

  Alignments for each domain:
  == domain 1  score: 109.6 bits;  conditional E-value: 2.1e-35
                 -HHHHHHHHHCCSS.HT.-HCCHHCHHCHHHHHHCSCCHCCS-HHHHHHHHHHHCCHHHHS--S-HHHHHHC---HHHHHHHHHHHHHHHHHHHGSS-- CS
    Cyclin_C   2 tplsFlrrflkaad.asedselrtlakylleltlldydflsyppSliAaaalllarstlnspewtetlehytgyskedlkpcvelilellssapssklq 99 
                 t+ +F++rflkaa   ++ds+++ l+kyl eltl++y+f++y+pS++Aaaal la++t++ p wt+ le  +gys edl+ cv   l    +a++++lq
  KOO24210.1 198 TAKVFINRFLKAARaGECDSTTEMLCKYLTELTLQEYSFVKYRPSEVAAAALRLALHTMRLPAWTPLLEATSGYSAEDLNGCVAEVLASFRKAETNNLQ 296
                 7889********66345568999*******************************************************************9******** PP

                 HHCCCCTCGGGCCCGGS-S CS
    Cyclin_C 100 avrrkyssskfhkvstlse 118
                 avr+kys+ kf +vstl++
  KOO24210.1 297 AVREKYSHAKFLCVSTLTP 315
                 ****************987 PP

>> AbiJ_NTD5  AbiJ N-terminal domain 5
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.0   1.5e-05     0.065      50      83 ..     271     304 ..     260     310 .. 0.87

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 1.5e-05
   AbiJ_NTD5  50 fgDdDYegnvldvlekllsedpenLkeleeylee 83 
                 ++ +D +g+v++vl++  +++++nL++++e  ++
  KOO24210.1 271 YSAEDLNGCVAEVLASFRKAETNNLQAVREKYSH 304
                 7889************************987665 PP

>> Ndc80_HEC  HEC/Ndc80p family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   1.9e-05     0.087      17      76 ..      42      99 ..      29     127 .. 0.81

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 1.9e-05
   Ndc80_HEC 17 sesekaasverDprplrdksfqseliqellefLkennfehsisaktlksPsqkdfssifk 76
                  + +++s + Dp  +rd +  ++  +e++++L + + eh + ++ ++  sq+d++ +++
  KOO24210.1 42 DMMVEPESFNLDPLTVRDPQLCHHYTKEIYSYLRDLELEHRVAPQFMQ--SQRDINATMR 99
                45556778899**********************************998..5888887664 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (320 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       491  (0.0273858); expected 358.6 (0.02)
Passed bias filter:                      440  (0.0245412); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.47u 0.24s 00:00:00.71 Elapsed: 00:00:00.41
# Mc/sec: 2321.77
//
Query:       KOO24211.1  [L=155]
Description: hypothetical protein Ctob_001549 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (155 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       335  (0.0186848); expected 358.6 (0.02)
Passed bias filter:                      320  (0.0178482); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.25s 00:00:00.61 Elapsed: 00:00:00.39
# Mc/sec: 1202.50
//
Query:       KOO24212.1  [L=244]
Description: hypothetical protein Ctob_001551 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.6e-15   56.9   0.1      4e-15   56.2   0.1    1.3  1  Cupin_8   Cupin-like domain
      1e-05   25.2   0.0    1.3e-05   24.9   0.0    1.2  1  Cupin_4   Cupin superfamily protein


Domain annotation for each model (and alignments):
>> Cupin_8  Cupin-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.2   0.1   4.5e-19     4e-15     192     247 ..       2      56 ..       1      62 [. 0.96

  Alignments for each domain:
  == domain 1  score: 56.2 bits;  conditional E-value: 4.5e-19
     Cupin_8 192 vdveepdlekfprlkdakkalevtlnaGevLylPalWfHeVksla.eeplhlavnyw 247
                 v+ve pdl++fp l++a +ale+ l++G+vL+lP+ W+H+V++l+ +++ ++++n+w
  KOO24212.1   2 VNVEMPDLSRFPALRRA-RALEAILEPGDVLWLPRYWWHYVHQLDaPSE-NISLNFW 56 
                 8999*************.**************************98888.******* PP

>> Cupin_4  Cupin superfamily protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.9   0.0   1.4e-09   1.3e-05     175     209 ..      20      55 ..       5     119 .. 0.82

  Alignments for each domain:
  == domain 1  score: 24.9 bits;  conditional E-value: 1.4e-09
                 SEEEEE-TT-EEEE-TT-EEEEEBBT.-CCEEEEEE CS
     Cupin_4 175 vedfvLepGDlLYlPrgviHqgvaed.esltlSvgl 209
                   + +LepGD+L lPr ++H+   +d +s ++S+ +
  KOO24212.1  20 ALEAILEPGDVLWLPRYWWHYVHQLDaPSENISLNF 55 
                 6799*****************999998888887764 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (244 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       480  (0.0267723); expected 358.6 (0.02)
Passed bias filter:                      349  (0.0194657); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.41u 0.24s 00:00:00.64 Elapsed: 00:00:00.38
# Mc/sec: 1936.90
//
Query:       KOO24213.1  [L=289]
Description: hypothetical protein Ctob_001561 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.5e-08   34.1   0.2    2.3e-07   31.0   0.0    2.0  2  ATG27            Autophagy-related protein 27
      1e-07   31.4   0.0    1.5e-07   30.8   0.0    1.2  1  Man-6-P_recep    Mannose-6-phosphate receptor
  ------ inclusion threshold ------
      0.094   13.0   0.1       0.19   12.1   0.1    1.6  1  KCNQC3-Ank-G_bd  Ankyrin-G binding motif of KCNQ2-3


Domain annotation for each model (and alignments):
>> ATG27  Autophagy-related protein 27
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.8   0.1     0.059   3.5e+02      15      66 ..      28      75 ..       8      89 .. 0.62
   2 !   31.0   0.0   3.8e-11   2.3e-07     200     249 ..     190     239 ..     167     247 .. 0.82

  Alignments for each domain:
  == domain 1  score: 0.8 bits;  conditional E-value: 0.059
       ATG27 15 ldCskivvdkglkkydlsklkgphsvstseetppskt.nttytldiCeplkkk 66
                 +C+    + g  +ydls+++ +  +++     ++ t    y++ +C pl  +
  KOO24213.1 28 NNCK---YTCGGINYDLSAIQKA--MNKPGYFLDQDTdDHWYFFTPCGPLPAS 75
                6788...4446666999999554..3344444445542555667888887665 PP

  == domain 2  score: 31.0 bits;  conditional E-value: 3.8e-11
       ATG27 200 wlfiilflataaYlifgswlNynryGargwDllphgdtirdlPyllkDvv 249
                 +l+++l +a+ +Yl++g ++N++  + rg +++p+ + +r lP l+kD+ 
  KOO24213.1 190 FLILLLGVAVPIYLGGGYFYNFKYTQKRGIEAVPQIEYWRQLPGLVKDGC 239
                 344445556668************************************86 PP

>> Man-6-P_recep  Mannose-6-phosphate receptor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.8   0.0   2.5e-11   1.5e-07     160     220 ..     181     242 ..     176     267 .. 0.89

  Alignments for each domain:
  == domain 1  score: 30.8 bits;  conditional E-value: 2.5e-11
  Man-6-P_recep 160 esklsvGsillivllsl.vavyligGflyqrlvvgakGleqiPnyafWqdlGnlvadGCdfv 220
                     s ls Gs++li+ll + v +yl gG++y+    + +G+e +P+  +W++l  lv dGC f 
     KOO24213.1 181 ASGLSGGSLFLILLLGVaVPIYLGGGYFYNFKYTQKRGIEAVPQIEYWRQLPGLVKDGCLFS 242
                    5789********99975489***************************************885 PP

>> KCNQC3-Ank-G_bd  Ankyrin-G binding motif of KCNQ2-3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.1   3.1e-05      0.19      63      95 ..      47      80 ..      16      86 .. 0.80

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 3.1e-05
  KCNQC3-Ank-G_bd 63 arvrp.ylaeGesDtDsDlftPsGplplsstGeg 95
                     a ++p y  + ++D     ftP+Gplp s t  +
       KOO24213.1 47 AMNKPgYFLDQDTDDHWYFFTPCGPLPASVTCTS 80
                     4456668888888888889**********99754 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (289 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       473  (0.0263818); expected 358.6 (0.02)
Passed bias filter:                      378  (0.0210832); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.44u 0.24s 00:00:00.68 Elapsed: 00:00:00.41
# Mc/sec: 2138.51
//
Query:       KOO24214.1  [L=159]
Description: calcium channel [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    6.2e-11   42.0   6.5    7.8e-11   41.7   6.5    1.1  1  Ion_trans   Ion transport protein
    5.4e-06   25.6   0.6    1.1e-05   24.7   0.6    1.5  1  EF-hand_5   EF hand
    1.7e-05   24.0   0.3    3.2e-05   23.1   0.3    1.5  1  EF-hand_1   EF hand
    2.5e-05   23.8   0.1    5.3e-05   22.8   0.1    1.5  1  EF-hand_6   EF-hand domain
    0.00011   22.6   0.0    0.00014   22.2   0.0    1.2  1  EF-hand_7   EF-hand domain pair
     0.0093   15.8   0.1      0.017   14.9   0.1    1.4  1  EF-hand_8   EF-hand domain pair
  ------ inclusion threshold ------
      0.016   15.6   1.0      0.028   14.8   0.2    1.7  2  DUF2663     Protein of unknown function (DUF2663)
       0.16   12.3   3.5       0.42   11.0   3.5    1.7  1  PEMT        Phospholipid methyltransferase
        1.2    9.2   6.1          3    8.0   1.5    2.4  2  COX4_pro_2  Bacterial aa3 type cytochrome c oxidase subunit I


Domain annotation for each model (and alignments):
>> Ion_trans  Ion transport protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.7   6.5   3.9e-14   7.8e-11     125     244 ..      10     121 ..       2     122 .. 0.77

  Alignments for each domain:
  == domain 1  score: 41.7 bits;  conditional E-value: 3.9e-14
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCCCCSCCSTSSSTTTSSSSSSHHHHHHHHHHHHTTSSHHHHHHHHHHHSHHHHHHHHHHHHHHHHH CS
   Ion_trans 125 rsvkdllnvlllllvvlfifaligvqlfkgklreknecaktwenpnngntnFdnfftallwlfrlmttegwgdilyatldekskvaliyfvifiilgsf 223
                  +v++ll v l +++++ +  + +  l        ++++ ++ ++   + +F ++ ++ + lf+++tt +++d++ + ++ +  +++++f++++i+g+ 
  KOO24214.1  10 STVRSLLGVWLTFALFITFATWTAKMLV-------VDSVGGGIDEYGVTKTFPDVTETTWKLFVMITTCNYPDVMMPAYQTS-RFTFFFFGAVLIFGNW 100
                 4555555555555555544444443333.......2244556666556666*****************************99.**************** PP

                 HHHHHHHHHHHHHHHHHHHHH CS
   Ion_trans 224 lllNlliaviadnfqeltere 244
                 +llNl++a+++ ++  ++ +e
  KOO24214.1 101 FLLNLILAIVNAAYTTQKAQE 121
                 ***************999887 PP

>> EF-hand_5  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.7   0.6   5.3e-09   1.1e-05       1      23 [.     133     155 ..     133     157 .. 0.90

  Alignments for each domain:
  == domain 1  score: 24.7 bits;  conditional E-value: 5.3e-09
                 HHHHHHHH-SS-SSCE-HHHHHH CS
   EF-hand_5   1 lkdtFqaiDlNgDGkIskeELkt 23 
                 l+++F+ +D +gDG Is+eE ++
  KOO24214.1 133 LEKAFDLMDEDGDGIISREEIEQ 155
                 6789****************865 PP

>> EF-hand_1  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.1   0.3   1.6e-08   3.2e-05       2      24 ..     133     155 ..     132     157 .. 0.91

  Alignments for each domain:
  == domain 1  score: 23.1 bits;  conditional E-value: 1.6e-08
                 HHHHHHHHTTTSSSEEEHHHHHH CS
   EF-hand_1   2 lkeiFrefDkDgdGkIdfeEfke 24 
                 l+++F+++D DgdG I++eE  +
  KOO24214.1 133 LEKAFDLMDEDGDGIISREEIEQ 155
                 789*****************876 PP

>> EF-hand_6  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.8   0.1   2.7e-08   5.3e-05       2      25 ..     133     156 ..     132     156 .. 0.93

  Alignments for each domain:
  == domain 1  score: 22.8 bits;  conditional E-value: 2.7e-08
   EF-hand_6   2 lreaFklfDkdgdGkidaeElrka 25 
                 l++aF+l+D dgdG i++eE+ +a
  KOO24214.1 133 LEKAFDLMDEDGDGIISREEIEQA 156
                 789*****************9886 PP

>> EF-hand_7  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.2   0.0   7.3e-08   0.00014      37      69 ..     124     156 ..      93     158 .. 0.84

  Alignments for each domain:
  == domain 1  score: 22.2 bits;  conditional E-value: 7.3e-08
   EF-hand_7  37 egsklsdeelellfkefDtdkdGvisfdEFlkl 69 
                    +l++ +le+ f+ +D d+dG is++E +++
  KOO24214.1 124 ALQELRRSSLEKAFDLMDEDGDGIISREEIEQA 156
                 456788999********************9986 PP

>> EF-hand_8  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.1   8.7e-06     0.017      32      47 ..     137     152 ..     126     154 .. 0.93

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 8.7e-06
   EF-hand_8  32 frefDtdgdGkisfeE 47 
                 f+++D+dgdG+is eE
  KOO24214.1 137 FDLMDEDGDGIISREE 152
                 99************99 PP

>> DUF2663  Protein of unknown function (DUF2663)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.7   0.1      0.32   6.4e+02      25      63 ..      20      69 ..       6      83 .. 0.57
   2 ?   14.8   0.2   1.4e-05     0.028      23     103 ..      63     143 ..      56     153 .. 0.72

  Alignments for each domain:
  == domain 1  score: 0.7 bits;  conditional E-value: 0.32
     DUF2663 25 lallvlllfliyvlik...........ssslssllsallessvlllllll 63
                l+++++++f+ + + +           ++++++ +  + e +  l+++++
  KOO24214.1 20 LTFALFITFATWTAKMlvvdsvgggidEYGVTKTFPDVTETTWKLFVMIT 69
                33333333333332223345566655556666666666666666666655 PP

  == domain 2  score: 14.8 bits;  conditional E-value: 1.4e-05
     DUF2663  23 sllallvlllfliyvlik..ssslssllsallessvll..lllllvallyvavkllkkKaeKaEkefhaLrceiiekSkdlwkke 103
                 +l+ +++++ +      +  ++++s++  +++++ +++  ++ll ++l++v + +  +Ka+  E+  ++Lr   +ek  dl +++
  KOO24214.1  63 KLFVMITTCNYPDV---MmpAYQTSRFTFFFFGAVLIFgnWFLLNLILAIVNAAYTTQKAQ-EEEALQELRRSSLEKAFDLMDED 143
                 33333333333322...13477777777777777776655899999999999999999876.67789**************9886 PP

>> PEMT  Phospholipid methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   3.5   0.00021      0.42      43     100 ..      68     127 ..      14     129 .. 0.79

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00021
        PEMT  43 vtsGiYrylnnPeyvgs..tlgflGlaLitgsaaglllallvllvylialkfvEephlak 100
                 +t+  Y  +  P y +s  t  f+G++Li+g++  l l+l ++ + +   k  Ee+ l++
  KOO24214.1  68 ITTCNYPDVMMPAYQTSrfTFFFFGAVLIFGNWFLLNLILAIVNAAYTTQKAQEEEALQE 127
                 555566666667777653378899**********99999999999999999999999987 PP

>> COX4_pro_2  Bacterial aa3 type cytochrome c oxidase subunit IV
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.0   1.5    0.0015         3      20      37 ..      21      38 ..      20      39 .. 0.90
   2 ?    3.0   0.2     0.055   1.1e+02      18      29 ..      59      70 ..      57      71 .. 0.91

  Alignments for each domain:
  == domain 1  score: 8.0 bits;  conditional E-value: 0.0015
  COX4_pro_2 20 TYagFlkltkwgtlavav 37
                T+a+F+++++w++  ++v
  KOO24214.1 21 TFALFITFATWTAKMLVV 38
                9***********987775 PP

  == domain 2  score: 3.0 bits;  conditional E-value: 0.055
  COX4_pro_2 18 ekTYagFlkltk 29
                e T+++F+ +t+
  KOO24214.1 59 ETTWKLFVMITT 70
                89******9998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (159 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1038  (0.057895); expected 358.6 (0.02)
Passed bias filter:                      660  (0.0368119); expected 358.6 (0.02)
Passed Vit filter:                        57  (0.00317921); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.40u 0.27s 00:00:00.67 Elapsed: 00:00:00.40
# Mc/sec: 1187.92
//
Query:       KOO24215.1  [L=445]
Description: two pore calcium channel protein 1 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.8e-26   92.9  22.3    2.2e-26   92.6  22.3    1.1  1  Ion_trans  Ion transport protein


Domain annotation for each model (and alignments):
>> Ion_trans  Ion transport protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   92.6  22.3   1.2e-30   2.2e-26       2     242 ..      70     323 ..      69     326 .. 0.86

  Alignments for each domain:
  == domain 1  score: 92.6 bits;  conditional E-value: 1.2e-30
                 HHHHHHHHHHHHHHHHHHHC.CCSSSSHHHHC...HHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHCHSHHHHHHHHHHHHHHHHH........HHH CS
   Ion_trans   2 svfelfilllillncvflal.etyfpedelek...tileilelvftaiftlemllkilalgllikkrYlrdpwnilDflvvlpsllsl........vls 88 
                 + fel+i  ++++n+v+l + e+ +++++  +   ++ +i+ lvft+if++emllk+ +lg+     Y r+++n++D +v++ +++          +  
  KOO24215.1  70 RAFELVIDAVLVCNAVLLLVlEFVPDPKHDLDawnSWSTIMGLVFTWIFVIEMLLKLASLGF---IVYARSLMNLFDAVVTVAGVVLTvliiwpngY-- 163
                 67999996666666665554388888855555899***************************...****************9999955466554431.. PP

                 HHHHHHHHHHHHHGGGGGGHHHCHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCC...CC.....SCCSTSSSTTTSSSSSSH CS
   Ion_trans  89 eesllllsvlrlfrvlrllklisrleglrtlvtalirsvkdllnvlllllvvlfifaligvqlfkgklrek...ne.....caktwenpnngntnFdnf 179
                     + l+   l+r++r+++++  ++ +  +  +++r++++   ++ +ll  +++ a +g+q+f+g +++    ++       k w n  +  +nF+++
  KOO24215.1 164 -DDPIYLRYALLLRFVRFFRVFYLIPAVAFIFSTFVRIIPNATVLIAVLLSGMYVIAALGMQFFGGLINRDpsrEQgalltADKDWPNY-YWPNNFNDM 260
                 .56899**********************************************************9999977655116666544556555.44567**** PP

                 HHHHHHHHHHHTTSSHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
   Ion_trans 180 ftallwlfrlmttegwgdilyatldekskvaliyfvifiilgsflllNlliaviadnfqelte 242
                 ++ ++  f+l+  ++w  ++  ++   +++a  +f+i ++++  l+lNllia+ +++++   +
  KOO24215.1 261 MSGMVVCFELLVVNNWHVVTEGFTCVAGNWARWFFIINYLFMHNLILNLLIAFAIEAYNAAMK 323
                 **********************************************************97665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (445 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       809  (0.0451224); expected 358.6 (0.02)
Passed bias filter:                      365  (0.0203581); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.51u 0.27s 00:00:00.78 Elapsed: 00:00:00.42
# Mc/sec: 3172.56
//
Query:       KOO24216.1  [L=600]
Description: hypothetical protein Ctob_001555 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      1e-19   70.9   1.4    1.9e-19   70.0   1.4    1.5  1  ThrE      Putative threonine/serine exporter
    2.9e-09   36.8   0.0    5.5e-09   35.9   0.0    1.4  1  Rieske    Rieske [2Fe-2S] domain
    1.7e-06   27.9   0.0    3.3e-06   27.0   0.0    1.4  1  Rieske_2  Rieske-like [2Fe-2S] domain


Domain annotation for each model (and alignments):
>> ThrE  Putative threonine/serine exporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.0   1.4   3.3e-23   1.9e-19       2     240 ..     242     482 ..     241     483 .. 0.84

  Alignments for each domain:
  == domain 1  score: 70.0 bits;  conditional E-value: 3.3e-23
        ThrE   2 lilrlGeiLlesGaetyrvedtmkriaralgleevevfvtptsiivsvdeeeesittvrrvrsrgvnleklsevnelsreiaag.eisleeaeerLdeI 99 
                 lil+++  L+++G+++ +ve     ++ ++g+    v+++p  ++ s+   ++   ++ + + r++  + l+++++l+  i++g   ++  a    d++
  KOO24216.1 242 LILKMALGLFAYGQPSVDVEMFCLEASLRFGVPAPYVSIGPRVLTASF--GSH-PPHLLE-CGRDIVCSYLADLHTLAVMITRGeANDAPTALYVCDQL 336
                 68999999****************************************..234.455555.6**********************777899********* PP

        ThrE 100 erskpryprwlvvlaaglaaaafallf.ggdwidflvaflagllggllrlllakrglnsfvleavaaflasllallavsl.....glglnpdaiiigsi 192
                  +++++y+++++++a+ ++a   ++++  g+ +d++ a+l+ + + l+ +l +  g +  +  +  +f +++ a l+ ++     ++  ++   +ig +
  KOO24216.1 337 LKRPRPYGWLIQLVAFECIAILAVPVVlPGSYQDMPGAALICASLLLTMQLGKVLG-IAHLEIMYISFAVGAAAPLVWYYvsnsgQPLCHIGPQYIGPL 434
                 ********************98887777*********9999987766665544433.444444555555555554444432222244555899****** PP

        ThrE 193 llLvPGlpltnavrDllsgdlvsGlaRlveailialaiafGivlalsl 240
                 ++ +PG  ++ a ++l++g +v G+aRlv+a+++++ +a+ i+l++++
  KOO24216.1 435 IIHLPGCQFIWAALELAQGSMVHGTARLVNAMFQVMLMAIFITLGWQI 482
                 ***********************************9999999999886 PP

>> Rieske  Rieske [2Fe-2S] domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.9   0.0   9.2e-13   5.5e-09      16      74 ..     140     206 ..     130     217 .. 0.83

  Alignments for each domain:
  == domain 1  score: 35.9 bits;  conditional E-value: 9.2e-13
                 EEEEEETTEEEEEEE-T....TS-EEEEESC-TTTT-BCGGSEEE...TT.EEE-TTT--EEE.TTS CS
      Rieske  16 pltvkvggeplvvlrde....dgevyAlsdvCtHrgaplsegkid...ekgvleCpcHgwayd.adG 74 
                 +++v++g+++l+++ +      +++yA++  C+H+ga l+ g i+   +   ++Cp Hgw++d ++G
  KOO24216.1 140 SVRVTLGQRTLAIYSEVsetgAETLYAIDADCPHQGAALEAGDIEevnGAACVVCPRHGWCFDlKTG 206
                 578899999*****954777799****************8888844447789***********7666 PP

>> Rieske_2  Rieske-like [2Fe-2S] domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.0   0.0   5.5e-10   3.3e-06      18      80 ..     142     207 ..     135     226 .. 0.83

  Alignments for each domain:
  == domain 1  score: 27.0 bits;  conditional E-value: 5.5e-10
                 EEEETTEEEEEEE-....TTS-EEEEESS-TTTSSSTCCCSEEEECTTCEEEE-TTT--EEETTT-B CS
    Rieske_2  18 aalvdgkqvalfrl....ekeevyAidnldpaseanvlsrGlvgdkkgelvvasPlykqkfdLktGe 80 
                  + ++++  a+        +e++yAid+ +p  + ++l  G +++ +g  +v++P ++  fdLktG 
  KOO24216.1 142 RVTLGQRTLAIYSEvsetGAETLYAIDADCPH-QGAALEAGDIEEVNGAACVVCPRHGWCFDLKTGW 207
                 556677777777665544678***********.7899*****************************5 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (600 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       931  (0.051927); expected 358.6 (0.02)
Passed bias filter:                      598  (0.0333538); expected 358.6 (0.02)
Passed Vit filter:                        62  (0.00345808); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.65u 0.28s 00:00:00.93 Elapsed: 00:00:00.44
# Mc/sec: 4061.76
//
Query:       KOO24217.1  [L=775]
Description: hypothetical protein Ctob_001554 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    4.6e-18   66.1   0.0    1.4e-17   64.6   0.0    1.8  1  2OG-FeII_Oxy_2  2OG-Fe(II) oxygenase superfamily
    7.4e-10   38.4   5.4    7.4e-10   38.4   5.4    1.6  2  Mg_trans_NIPA   Magnesium transporter NIPA
  ------ inclusion threshold ------
       0.96    9.6  18.1      0.067   13.4   5.3    3.2  3  EamA            EamA-like transporter family
        1.5    8.8   4.2        4.7    7.1   0.6    2.6  2  zf-LSD1         LSD1 zinc finger


Domain annotation for each model (and alignments):
>> 2OG-FeII_Oxy_2  2OG-Fe(II) oxygenase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.6   0.0   3.1e-21   1.4e-17       2     196 .]     581     759 ..     580     759 .. 0.82

  Alignments for each domain:
  == domain 1  score: 64.6 bits;  conditional E-value: 3.1e-21
  2OG-FeII_Oxy_2   2 lllipnflsaeeaaellrelleegpfrqptilggkrvsvqqtllgplgwatdgpgyrysekesvdakplspfpeallrlverlvkaagpegwspn 96 
                     ++l+p++lsa e+++l+++l e  ++ ++ +  g + +++    g+ g  +     +  +  + + + ++pf+++l r+v+++ +  + +g + +
      KOO24217.1 581 VYLLPGLLSAMEQMALFERLSEWDGWKRESDDFGPQGRLTAY-VGEPGAIF-----SFVGL-VCHPHAAPPFLTELFRRVNEVIA--ESHGTKCT 666
                     578889999999999999999888887777666666655543.33444444.....55555.6788999**************97..56999*** PP

  2OG-FeII_Oxy_2  97 aalvnfYrdga.riglHqDke.esaleapivSlSLGasatfrfgkes.reeeiiailLesGdllvmggesrkayHgvprikkdtapeleleelrt 188
                      +l n Y +++  i +H+D+   +++++ +v +S G s+ f ++ +   +ee  ++ L++G++lvm ge+++++++  + ++             
      KOO24217.1 667 GCLLNNYTPDDgHIPWHSDEVrAHGPSKLVVAVSTGGSRPFDLRRRGaSDEEKMRVMLPPGSALVMCGETQAHWQHALPLEPP----------AP 751
                     *********999*********6669******************86664788999********************555555552..........46 PP

  2OG-FeII_Oxy_2 189 rRinlTfR 196
                      Ri+lTfR
      KOO24217.1 752 PRISLTFR 759
                     7******9 PP

>> Mg_trans_NIPA  Magnesium transporter NIPA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.4   5.4   1.7e-13   7.4e-10       6     139 ..     159     290 ..     154     305 .. 0.85
   2 ?   -3.7   0.2       1.1     5e+03      84     124 ..     411     456 ..     400     465 .. 0.43

  Alignments for each domain:
  == domain 1  score: 38.4 bits;  conditional E-value: 1.7e-13
  Mg_trans_NIPA   6 GvlLavssslfigssfilkkkgllrlarkgevrageGGyaylkevlWwaGlltmavGeaanfaayafaPatLvtPLGalsvivsavlasllLkekL 101
                     + Lav +s+   +  +l+k++   l ++  + + +    y  + lW  Gll+ + G    ++a ++aP++++ P+G   + + a++++++Lke L
     KOO24217.1 159 AIALAVIGSASNNIGKVLQKQATTDLPQMS-MDP-KVLLLYTSSHLWRLGLLADVGGALITLIALSMAPVSVIQPVGGCGMAILALFSHFYLKEIL 252
                    467788888877777888888888888887.666.67889******************************************************** PP

  Mg_trans_NIPA 102 kllgllGcllailGstvlvihaPkeeeieslkevadll 139
                    ++++ +G+ +a++G++ + + a + ++i    ++   l
     KOO24217.1 253 RTIERIGVAMAVIGTIGVGLTASQSKSIMPNAAMGCFL 290
                    ***************99999999998887766665555 PP

  == domain 2  score: -3.7 bits;  conditional E-value: 1.1
  Mg_trans_NIPA  84 lsvivsa.vlasllLkekLkllgllG...cllail.GstvlvihaP 124
                    +  ivs  v+  l L+e +    + G    ll+il G  +l+  aP
     KOO24217.1 411 IGTIVSGvVIGLLALNEGIPSDSIGGwacSLLCILaGIGLLMRRAP 456
                    4444443134444555555432222222124454324445555555 PP

>> EamA  EamA-like transporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   5.3   1.5e-05     0.067      70     135 ..     205     270 ..     193     272 .. 0.94
   2 ?    2.8   2.1     0.027   1.2e+02       5     130 ..     377     442 ..     343     453 .. 0.50
   3 ?   -1.3   0.0       0.5   2.2e+03      40      62 ..     526     549 ..     516     556 .. 0.58

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 1.5e-05
        EamA  70 lgllgtvlafllffyalkktsasnaslitslePvftlilsvlllgekltlkqllgivlillGvlli 135
                 lgll+ v + l+ ++al+  ++s++ ++     ++ +++s+++l+e l  ++ +g++++++G++ +
  KOO24217.1 205 LGLLADVGGALITLIALSMAPVSVIQPVGGCGMAILALFSHFYLKEILRTIERIGVAMAVIGTIGV 270
                 68888999999***************************************************9976 PP

  == domain 2  score: 2.8 bits;  conditional E-value: 0.027
        EamA   5 llallaalfwaiyfvlskillrkvspltltfvrfliagillliiallkegklaklslkdwllllllgllgtvlafllffyalkktsasnaslitslePv 103
                 l + ++  f++++++++ +++++   + ++++   i++i+                                                           
  KOO24217.1 377 LGVACSIAFSSAGIFCQNRGMKEGRAVVVCTYAV-IGTIVS---------------------------------------------------------- 416
                 2233333344444444445555555554444443.333333.......................................................... PP

        EamA 104 ftlilsvlllgekltlkqllgivlill 130
                   ++++ l l+e + + ++ g +++ll
  KOO24217.1 417 -GVVIGLLALNEGIPSDSIGGWACSLL 442
                 .34444444444444444433333332 PP

  == domain 3  score: -1.3 bits;  conditional E-value: 0.5
        EamA  40 iagillliiallkegkl.aklslk 62 
                  a+++ll+++l ++ ++  +l+  
  KOO24217.1 526 TASVALLVLLLRRKANKrHQLPTA 549
                 466667777776666664444444 PP

>> zf-LSD1  LSD1 zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.1   0.6    0.0011       4.7       3      16 ..     137     150 ..     135     150 .. 0.94
   2 ?    1.9   0.2     0.045     2e+02       9      19 ..     723     733 ..     720     734 .. 0.91

  Alignments for each domain:
  == domain 1  score: 7.1 bits;  conditional E-value: 0.0011
     zf-LSD1   3 gCrtlLmYPrGAps 16 
                  Cr+ L +PrGA+s
  KOO24217.1 137 RCRAHLCVPRGASS 150
                 6***********98 PP

  == domain 2  score: 1.9 bits;  conditional E-value: 0.045
     zf-LSD1   9 mYPrGApsVrC 19 
                 m+P+G+++V C
  KOO24217.1 723 MLPPGSALVMC 733
                 99*******99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (775 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       661  (0.0368676); expected 358.6 (0.02)
Passed bias filter:                      423  (0.0235931); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.66u 0.29s 00:00:00.95 Elapsed: 00:00:00.46
# Mc/sec: 5091.42
//
Query:       KOO24218.1  [L=301]
Description: protein-ribulosamine 3- chloroplastic-like protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    7.6e-72  241.9   0.0    9.1e-72  241.7   0.0    1.0  1  Fructosamin_kin  Fructosamine kinase
    3.8e-12   46.7   0.1    5.1e-12   46.2   0.1    1.1  1  APH              Phosphotransferase enzyme family


Domain annotation for each model (and alignments):
>> Fructosamin_kin  Fructosamine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  241.7   0.0     1e-75   9.1e-72       9     284 ..      12     298 ..       5     301 .] 0.91

  Alignments for each domain:
  == domain 1  score: 241.7 bits;  conditional E-value: 1e-75
  Fructosamin_kin   9 lsealgkafeiteaekveggeineayllseeeqrfFvklne.kealemFeaEaesLealaetqtirvPkvlavGel.kdasfLvleyLelklek 100
                      l+ +lgk  + ++  + +gg + + y+l+ +  ++ vk+++ k+ ++mF +Ea +L+al+++ ++ vP+v+++  +    s+L++e++e++  +
       KOO24218.1  12 LTFNLGKIASKRSMASGSGGAALTRYTLEGARCDVVVKTSRsKNLEQMFLGEAFGLRALRASGSMVVPEVFHFDDSiAGGSYLIMEFMEFS--G 103
                      556666666777777888999999****************9788999*************************98765999***********..7 PP

  Fructosamin_kin 101 kesaaelgqqLaklHr......aseqkefGfdvdntigktpqpNewq.....ssWaeFfaeqRlgvqlelakekgle..fakieelvervaell 181
                      + +  e+g+ +a++H          + +fGf+vdntig+tpqpN+w+       W+eFf+++R+g+ql+la+++ ++  ++++ e ++ +a+l+
       KOO24218.1 104 RADPSEFGRCMAQMHAavpldeEARAGKFGFKVDNTIGATPQPNSWTagtgtAAWVEFFRDKRIGHQLRLARDERMKqeWERVLEATDGLATLF 197
                      7899************99988777889*******************73333358*******************99975578888899999**** PP

  Fructosamin_kin 182 skhqpkpsllHGdLWsgNaaltkdgepvifdPaayygdrEvdlamtelfggfpsefyegYqsivpldegyeeRkelYqLYhlLnhlnlFgggyl 275
                      ++ ++kps+lHGdLWsgN+a+++ + p ifdPaayyg++E++ +m  ++  ++++f++gY++++p+deg+++R  lY+LYh Lnh+nlFgggy 
       KOO24218.1 198 NGVEVKPSVLHGDLWSGNIAAVAGK-PAIFDPAAYYGHHEAEWGMA-WCASLGPAFWQGYRDVLPKDEGFDKRAVLYELYHKLNHYNLFGGGYY 289
                      ********************99988.*******************8.*********************************************** PP

  Fructosamin_kin 276 sqaqkliqk 284
                      + a  l+ +
       KOO24218.1 290 HDALGLMMS 298
                      999888765 PP

>> APH  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.2   0.1   5.7e-16   5.1e-12       7     224 ..      30     259 ..      27     273 .. 0.80

  Alignments for each domain:
  == domain 1  score: 46.2 bits;  conditional E-value: 5.7e-16
                 -.SSCEEEEEEETT--EEEEEE-TTS-HHHHHHHHHHHHHHHHTT-.B--B-CTTB.S-EEETTEEEEEEE----EE-SS......HHHHHHHHHHHHH CS
         APH   7 ggasnrtylvttpagryvlrrnpparaaeeirrevallrlLakagv.pvPevlagd.tddeeigllfalieyvpgrsllr......klsaaqlpellea 97 
                 gga   +y +++++ ++v++ ++ + +++ + +e+  lr+L+++g   vPev+++d   +++++l ++++e+ + +++++      +++aa+  +  ++
  KOO24218.1  30 GGAALTRYTLEGARCDVVVKTSRSKNLEQMFLGEAFGLRALRASGSmVVPEVFHFDdSIAGGSYLIMEFMEFSGRADPSEfgrcmaQMHAAVPLDEEAR 128
                 6777777888887779***************************************9888999999*************999999999999999999999 PP

                 HHHHHCCHHCH.-STTTB-SHHCHTCCHHHHHHCHHHCCCGCCTCC.HHHHHHHHHHHHHHHH--S........SS-EEEE-SS-SGGGEEEC..TTEE CS
         APH  98 lgeflaalhqvdpaalpladflaqdlellrqlesatarllaselld.lleeleeqvlaalaallpg........elptvllHgDlhpgNllvdpddgrv 187
                 +g f +++ ++ +a+  + +++a     ++++e  +  ++ ++l+  + e++ +  ++++++  +g        e+++++lHgDl +gN+      g+ 
  KOO24218.1 129 AGKFGFKVDNTIGATPQPNSWTAG-TGTAAWVEFFRDKRIGHQLRLaRDERMKQ-EWERVLEATDGlatlfngvEVKPSVLHGDLWSGNIAAV--AGKP 223
                 999999999998777777788865.44444444443444444444433556666.7777777777789999********************99..5554 PP

                 EEE---TT-EEEECCHHHHCCH.HHCSCHCCCHCHHHH CS
         APH 188 tGviDfedaglgpplyDlavll.rswtseldpeflaal 224
                  +++D   a +g+  +++++++ +s++ +++  +++ l
  KOO24218.1 224 -AIFDPA-AYYGHHEAEWGMAWcASLGPAFWQGYRDVL 259
                 .69**96.999999999999996557777776666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (301 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       282  (0.0157287); expected 358.6 (0.02)
Passed bias filter:                      267  (0.0148921); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.43u 0.27s 00:00:00.70 Elapsed: 00:00:00.42
# Mc/sec: 2144.54
//
Query:       KOO24219.1  [L=1047]
Description: hypothetical protein Ctob_001552 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    2.8e-17   62.9   6.1    5.1e-17   62.1   6.1    1.3  1  RSN1_7TM     Calcium-dependent channel, 7TM region, putative 
    1.7e-07   30.5   0.2    3.2e-07   29.6   0.2    1.4  1  Anoctamin    Calcium-activated chloride channel
    1.2e-05   25.6   3.4      0.086   13.1   0.1    2.3  2  PHM7_cyt     Cytosolic domain of 10TM putative phosphate tran
     0.0052   17.2   0.1      0.017   15.5   0.1    1.8  1  Herpes_UL20  Herpesvirus egress protein UL20
  ------ inclusion threshold ------
       0.36   10.4   6.6        3.4    7.2   0.1    3.3  3  DUF998       Protein of unknown function (DUF998)


Domain annotation for each model (and alignments):
>> RSN1_7TM  Calcium-dependent channel, 7TM region, putative phosphate
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.1   6.1   1.4e-20   5.1e-17       4     266 ..     559     822 ..     557     828 .. 0.87

  Alignments for each domain:
  == domain 1  score: 62.1 bits;  conditional E-value: 1.4e-20
    RSN1_7TM   4 ivtlllvlliifwiipvafvgllsnletltkvlpflkkilelskkllsvvtgllPtlllslllallpiilrllsklqGalsrselelsvvskyfaFlvv 102
                 iv++ll +l++++++   +++ l ++ + +      ++   +s+k+ ++v + l ++++ ++++++ +++  l++ +++++rse e++ ++++ +F +v
  KOO24219.1 559 IVHTLLGVLLLVLATTSLYTTRLLQIAHAQFAADGNQDD--ISSKVPGFVVSTLNSVVTLVFNLIINFAIDKLTHREAHPTRSEFERHKFTRLSFFYLV 655
                 788999999999999999999*****9999866666555..99******************************************************** PP

    RSN1_7TM 103 nvFlvftlagtalsl......leeiidnptsipkllaeslpkasnFfityillqglagaaleLlqlvklilflikrkfls..ktprdlaerytkppsfd 193
                 n ++v+++++ ++ +      + ++i+    i +   e    +++ ++  i +++ a +  + + ++ li  ++ ++f++    + +l e+y  p++++
  KOO24219.1 656 NTLVVPIFVSMFTLYdpkdrnIVFFIT---GITQASFEGGGLVAQAYVLIISTSAAADF-ARYVDVPALIRRHVYGYFAErhGSQIKLNELY-RPSTMQ 749
                 **********99999777544444444...6666666666679999**99999999666.899*****************633444455555.****** PP

    RSN1_7TM 194 ygteypkvllifvialiYsviaPlilpfaliyfllgylvykyqllyvydtkyesgGklwpralnrllvglvlf 266
                  g+ y+ +  +++i+l+Y+++ P  l+++++ ++ ++++ ky +   y+t++  gG l +r+ n+l + l+l+
  KOO24219.1 750 IGQIYAETFRLVAIGLCYAPLYPPSLLLTACCLFSSIYATKYGIAKWYRTPPLIGGDLMKRMRNTLSLLLLLY 822
                 ***********************************************************99988876655554 PP

>> Anoctamin  Calcium-activated chloride channel
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.6   0.2   8.9e-11   3.2e-07     115     222 ..     553     667 ..     526     756 .. 0.81

  Alignments for each domain:
  == domain 1  score: 29.6 bits;  conditional E-value: 8.9e-11
   Anoctamin 115 krrlfrllvslplvllliclavvgvlilrclal..qelvssvke......lls.flptvlnlvlililnevykklaiwltdlEnhrtqseyekslilKv 204
                 +rr+++++ +l  v ll++la+  +  +r l++  ++++   ++      + + f+ + ln v+ l++n + +    +lt+ E h t se+e++  +++
  KOO24219.1 553 TRRCRHIVHTLLGV-LLLVLATTSLYTTRLLQIahAQFAADGNQddisskV-PgFVVSTLNSVVTLVFNLIINFAIDKLTHREAHPTRSEFERHKFTRL 649
                 35677666666544.444557777777777776545666666669965533.26********************************************* PP

   Anoctamin 205 flfqfvnsylslfyiaFv 222
                  +f+ vn+ +  ++++ +
  KOO24219.1 650 SFFYLVNTLVVPIFVSMF 667
                 *******99877766666 PP

>> PHM7_cyt  Cytosolic domain of 10TM putative phosphate transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.1   0.1   2.4e-05     0.086      24     131 ..     335     466 ..     307     484 .. 0.78
   2 !   12.9   0.5   2.7e-05     0.098     159     176 .]     529     546 ..     521     546 .. 0.85

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 2.4e-05
    PHM7_cyt  24 eelypgkvvesvqivrdv.kkldklveerekavrkleaalskykkngkklpkkr..........................pthklgflglkligkkvda 95 
                 ++ +++  ++++ + rd+ ++l +l +  e  +++ e + s+y+++++++ + +                            +k +   l+ i+++ d 
  KOO24219.1 335 RHGFNEADIQHIELGRDCgRELAQLRRLAEVKAQRQEFIFSRYRQQQNQEVASKqvavevvvpaptrlgtvlkplqrllrLDKKAK--DLEQIKRTRDD 431
                 4567778899999****63678899988888899999999999888876655556******************5554444223333..33357788888 PP

    PHM7_cyt  96 idyyrekleeldeeieeerekvkkkplgaaFvtfes 131
                 ++ ++++lee  +e++++ +++  ++ g aFv f+ 
  KOO24219.1 432 LHACSKELEEARAELRALSHET-HRTAGHAFVIFSL 466
                 8888888888888888888765.7899*****9974 PP

  == domain 2  score: 12.9 bits;  conditional E-value: 2.7e-05
    PHM7_cyt 159 kkwtvelAPePrDviWeN 176
                 ++++ve+APeP+Dv+WeN
  KOO24219.1 529 RHVHVERAPEPSDVMWEN 546
                 5789*************9 PP

>> Herpes_UL20  Herpesvirus egress protein UL20
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.1   4.8e-06     0.017      11      63 ..     638     687 ..     630     703 .. 0.82

  Alignments for each domain:
  == domain 1  score: 15.5 bits;  conditional E-value: 4.8e-06
  Herpes_UL20  11 seederpaftrasvlfllstlvlkpicclifllyakaltgrlllvagllaltv 63 
                   +e er +ftr s ++l+ tlv+ +   + f ly  + ++ +++++g++   +
   KOO24219.1 638 RSEFERHKFTRLSFFYLVNTLVVPIFVSM-FTLYDPKDRNIVFFITGIT--QA 687
                  4678999***************9877777.******************9..33 PP

>> DUF998  Protein of unknown function (DUF998)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.2   0.1   0.00095       3.4      33      63 ..     255     285 ..     230     294 .. 0.85
   2 ?   -1.4   0.0      0.42   1.5e+03     102     122 ..     558     578 ..     548     617 .. 0.71
   3 ?    4.4   0.7    0.0067        24      47      90 ..     816     859 ..     805     863 .. 0.80

  Alignments for each domain:
  == domain 1  score: 7.2 bits;  conditional E-value: 0.00095
      DUF998  33 aeggpggwlfnaglvllgllvlalavgllra 63 
                 +   +g  l  a++vl+g+l++a++v l+r 
  KOO24219.1 255 LVSHDGTLLLVATFVLVGMLFTAFLVRLRRM 285
                 3338889999****************88775 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 0.42
      DUF998 102 glvHglasavaflalavavll 122
                 ++vH+l +++ +++ + ++ +
  KOO24219.1 558 HIVHTLLGVLLLVLATTSLYT 578
                 566666666666666555553 PP

  == domain 3  score: 4.4 bits;  conditional E-value: 0.0067
      DUF998  47 vllgllvlalavgllraargragragrlllavaglglvlagvfp 90 
                  ll ll++a++v+++ ++ + +  a+++ll+++ l+l+l+++ p
  KOO24219.1 816 SLLLLLYIAIGVFVAVERYSYLDEASPRLLGLGLLWLFLMALGP 859
                 45556677777766666999******************999755 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1047 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1089  (0.0607396); expected 358.6 (0.02)
Passed bias filter:                      796  (0.0443973); expected 358.6 (0.02)
Passed Vit filter:                        64  (0.00356964); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.88u 0.32s 00:00:01.20 Elapsed: 00:00:00.48
# Mc/sec: 6511.22
//
Query:       KOO24220.1  [L=198]
Description: vesicle transport protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    6.3e-27   94.2  13.1    1.1e-26   93.4  11.8    1.9  2  Got1           Got1/Sft2-like family
  ------ inclusion threshold ------
      0.023   14.0   9.4       0.31   10.3   5.9    2.0  2  SLAC1          Voltage-dependent anion channel
       0.04   14.1   7.6      0.053   13.7   7.6    1.1  1  EamA           EamA-like transporter family
       0.12   12.1   4.1       0.17   11.6   4.1    1.2  1  Cation_efflux  Cation efflux family
        5.1    7.9   9.7         26    5.6   0.1    2.3  2  PrgI           PrgI family protein
        6.8    6.8   5.2         22    5.1   3.8    2.1  2  Vma12          Endoplasmic reticulum-based factor for assembl


Domain annotation for each model (and alignments):
>> Got1  Got1/Sft2-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.8   0.6    0.0062        18      14      39 ..      54      79 ..      48      86 .. 0.80
   2 !   93.4  11.8   3.8e-30   1.1e-26       6     113 .]      67     191 ..      63     191 .. 0.85

  Alignments for each domain:
  == domain 1  score: 5.8 bits;  conditional E-value: 0.0062
        Got1 14 llflkprkFallytlGnilflastaf 39
                ++ +++  F++++ +G i++l+s++f
  KOO24220.1 54 TFKQRLWGFGICFGIGCIVSLGSMMF 79
                33347889***************998 PP

  == domain 2  score: 93.4 bits;  conditional E-value: 3.8e-30
        Got1   6 lls...llglpllfl.....kprkFallytlGnilflastafLiGpkkqlkkmfskerliativyllsllltLyaalvl.........kstlltllfvi 87 
                 +++    lg ++++      +p  Fa+ ytlGn++++ast+fL+Gp +qlk+m +++r   ++v++ls ++tL++a+ l           +++++ +++
  KOO24220.1  67 GIGcivSLGSMMFWHkllqgNPGPFAINYTLGNLISVASTFFLMGPHRQLKRMSHPTRAGVALVFVLSAAATLVCAFLLpsmtqlsdnVIAVIIVACIV 165
                 4444555566666666777999********************************************************777777764335666777999 PP

        Got1  88 vqllallwyllsyiPggrsalkkvls 113
                 vq+ a++wy lsyiP+gr++ k ++s
  KOO24220.1 166 VQFSAFFWYALSYIPYGRRMCKACFS 191
                 **********************9985 PP

>> SLAC1  Voltage-dependent anion channel
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.3   0.1    0.0032       9.7     165     201 ..      45      85 ..      25      93 .. 0.77
   2 ?   10.3   5.9    0.0001      0.31     115     195 ..     101     186 ..      89     195 .. 0.64

  Alignments for each domain:
  == domain 1  score: 5.3 bits;  conditional E-value: 0.0032
       SLAC1 165 ll....gilvvslllwglGlllalvlfvlylyrlithklpp 201
                 ++    ++l + + lwg+G+++ +  +v + + ++ hkl++
  KOO24220.1  45 VIdatcPTLTFKQRLWGFGICFGIGCIVSLGSMMFWHKLLQ 85 
                 33566789999999**********99999998888888765 PP

  == domain 2  score: 10.3 bits;  conditional E-value: 0.0001
       SLAC1 115 tavvvvfll......ftek.eekleeitpawllpvvgllvvallgallaesqnpslqll.gilvvslllwglGlllalvlfvlylyrli 195
                 ++v  +f+l      +++  + +++ +  +++l++ ++lv+a+l  +++   + s++++  i+v+++++++ +++++++ ++ y  r+ 
  KOO24220.1 101 ISVASTFFLmgphrqLKRMsHPTRAGVALVFVLSAAATLVCAFLLPSMT---QLSDNVIaVIIVACIVVQFSAFFWYALSYIPYGRRMC 186
                 3333333331222222222233566677888899999999999998883...3333334678999999999999999999998888765 PP

>> EamA  EamA-like transporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   7.6   1.8e-05     0.053       2     114 ..      62     177 ..      61     191 .. 0.85

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 1.8e-05
        EamA   2 lgillallaalfwaiyfvlskillrkvspltltfvrfliagillliiallkegkl...aklslkdwllllllgllgtvlafllffyalkktsasnasli 97 
                 +gi++ +   ++ +++ +  k l  +  p++++     + +++  ++++   ++l   + +++ +++l+++l++ +t+++ +l+ +  + ++  +a++i
  KOO24220.1  62 FGICFGIGCIVSLGSMMFWHKLLQGNPGPFAINYTLGNLISVASTFFLMGPHRQLkrmSHPTRAGVALVFVLSAAATLVCAFLLPSMTQLSDNVIAVII 160
                 79*********************9999999988755446666666666666666667999*************************************** PP

        EamA  98 tslePvftlilsvlllg 114
                 ++ ++v    + ++ l 
  KOO24220.1 161 VACIVVQFSAFFWYALS 177
                 ****9998888888775 PP

>> Cation_efflux  Cation efflux family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   4.1   5.7e-05      0.17      92     197 ..      78     178 ..      60     179 .. 0.81

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 5.7e-05
  Cation_efflux  92 klikegereihaglalvvalvslvvnlalllilrragrklrsaalkaaalhvlgDaltslgvlvsalvillfnlksgplaDpvaslligliilysa 187
                     ++ ++  + ++g  ++   ++ ++++a+ ++l++  r+l+ ++  + a  +l+ +l+++++lv+a++   +     +l D v++++i++ i++  
     KOO24220.1  78 MFW-HKLLQGNPGPFAINYTLGNLISVASTFFLMGPHRQLKRMSHPTRAGVALVFVLSAAATLVCAFLLPSM----TQLSDNVIAVIIVACIVVQF 168
                    444.4444666777777777888999*****************************************88887....3578**************99 PP

  Cation_efflux 188 lkllkeslse 197
                       ++ +ls 
     KOO24220.1 169 SAFFWYALSY 178
                    9999999886 PP

>> PrgI  PrgI family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.6   0.1    0.0088        26      23      46 ..      64      87 ..      44     120 .. 0.68
   2 ?    4.4   5.4     0.021        63      22      67 ..     129     177 ..     127     194 .. 0.56

  Alignments for each domain:
  == domain 1  score: 5.6 bits;  conditional E-value: 0.0088
        PrgI 23 iflvlallvaiglylllrafleel 46
                i+++++++v++g +++ +++l+ +
  KOO24220.1 64 ICFGIGCIVSLGSMMFWHKLLQGN 87
                677788888888888888887333 PP

  == domain 2  score: 4.4 bits;  conditional E-value: 0.021
        PrgI  22 liflvlallvaiglylllrafl..eelasvlvillavP..vaalgfykkd 67 
                 l+f+++a++  +++++ll++++  +++ + ++i++ +   + a+ +y+ +
  KOO24220.1 129 LVFVLSAAA-TLVCAFLLPSMTqlSDNVIAVIIVACIVvqFSAFFWYALS 177
                 466666666.5666666677776633333333333333125555565544 PP

>> Vma12  Endoplasmic reticulum-based factor for assembly of V-ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.7   0.1      0.16   4.9e+02      84     117 ..     100     132 ..      93     145 .. 0.64
   2 ?    5.1   3.8    0.0074        22      69     115 ..     147     190 ..     118     194 .. 0.84

  Alignments for each domain:
  == domain 1  score: 0.7 bits;  conditional E-value: 0.16
       Vma12  84 liSvvavffavwialrsartpslpvrvllslvva 117
                 liSv+++ff +    r++ ++s p+r  ++lv+ 
  KOO24220.1 100 LISVASTFFLM-GPHRQLKRMSHPTRAGVALVFV 132
                 46666665544.2333444448888888887764 PP

  == domain 2  score: 5.1 bits;  conditional E-value: 0.0074
       Vma12  69 elkevnrqlilvlNiliSvvavffavwialrsartpslpvrvllslv 115
                  + +++ ++i+v+ + + vv   +++w+al+++   + + r+  +++
  KOO24220.1 147 SMTQLSDNVIAVIIVACIVVQFSAFFWYALSYI---PYGRRMCKACF 190
                 5789999***********************999...66666655555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (198 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1010  (0.0563333); expected 358.6 (0.02)
Passed bias filter:                      551  (0.0307323); expected 358.6 (0.02)
Passed Vit filter:                        52  (0.00290033); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.50u 0.24s 00:00:00.74 Elapsed: 00:00:00.42
# Mc/sec: 1419.53
//
Query:       KOO24221.1  [L=426]
Description: hypothetical protein Ctob_001545, partial [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
        5.1    5.4   8.4        2.1    6.7   6.0    1.5  1  CBP_BcsG  Cellulose biosynthesis protein BcsG


Domain annotation for each model (and alignments):
>> CBP_BcsG  Cellulose biosynthesis protein BcsG
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.7   6.0   0.00012       2.1     135     194 ..     206     266 ..     179     271 .. 0.62

  Alignments for each domain:
  == domain 1  score: 6.7 bits;  conditional E-value: 0.00012
    CBP_BcsG 135 saaaaaaaka.aeaeaakaaaaaaqaaeansanldealeaFyekekkrkvefpaklaadaq 194
                 ++aaaa++ka +++++a+a+a+a++a +   ++l+ea+++Fye ++krk + +a+++ad+ 
  KOO24221.1 206 VKAAAAEKKAgEDNSSAEAKAEAERAYASACDELQEAMDTFYEAQQKRKKAVEAEARADSV 266
                 22222222220223333333333333444456*****************999999888765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (426 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2469  (0.13771); expected 358.6 (0.02)
Passed bias filter:                      629  (0.0350828); expected 358.6 (0.02)
Passed Vit filter:                        86  (0.0047967); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.74u 0.28s 00:00:01.02 Elapsed: 00:00:00.44
# Mc/sec: 2889.80
//
Query:       KOO24222.1  [L=827]
Description: ubiquitin-protein ligase e3b [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.2e-94  314.9   0.0    9.3e-94  314.4   0.0    1.2  1  HECT      HECT-domain (ubiquitin-transferase)


Domain annotation for each model (and alignments):
>> HECT  HECT-domain (ubiquitin-transferase)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  314.4   0.0   5.2e-98   9.3e-94       3     307 .]     509     827 .]     507     827 .] 0.96

  Alignments for each domain:
  == domain 1  score: 314.4 bits;  conditional E-value: 5.2e-98
                 HHHHHT-GGGSSEEESSTTSSSEEE-TTHHHHS......HHHHHHHHHHHHHTT--BSS-B-HHHHHHHTT-.---TCHHHHH-HHHHHHHHHHH..HS CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        HECT   3 lskelldpklglfeeesedsgtlypkpssseee..llklfeflGkvlGkaiyeeilldlpfsraflkfllgeekitledleeidpelakslkellsles 99 
                 +  ++++p+ g+f  +++ ++ lyp+p s   +  +l+lf f+G++lGka+ye+i+++lp++ +f+++llg ++ +l++l+++dpela+sl  l++++ 
  KOO24222.1 509 ILSQAFNPQRGYF--CQTGQRHLYPNPASGAADpqHLRLFDFIGRALGKALYEGIVMELPLAAFFASKLLG-KHSSLDELSSLDPELASSLDFLKKYDG 604
                 567889*******..478888999999987777897799********************************.6**********************8765 PP

                 -GGG...GT-BSEEEEE.TTEEEEEESSTTGGGSB--TTTHHHHHHHHHHHHHTGGGHHHHHHHHHHHHTTS-HHHHTTS-HHHHHHHHBCSSS.--HH CS
                 xxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        HECT 100 nteevedlaLtFtipen.agasatieLipnGanipVtnenkkeYiklyvnyllkksvekqleaflkGfsevipskalklfdaeelellisGedelidve 197
                 +    +dl+LtF+++++ +ga ++++L ++G+ ipVt en+ eY++l+++y+l+k++++q++a+l G+++v+ps +l+lf+++el+ lisG+d  +d++
  KOO24222.1 605 DV--EADLCLTFSVDSEeFGARTSVDLREGGSVIPVTAENRIEYVHLMADYRLNKQIATQCKALLTGLHSVVPSGWLRLFNSSELQRLISGDDVPVDID 701
                 55..68*********99****************************************************************************99**** PP

                 HHHHTEEEETT--TTSHHHHHHHHHHHHS-HHHHHHHHHHHHSSSS--TTCGGG-B--EEEEE-S..................-TTS--EEEGGGTEEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx................xxxxxxxxxxxxxxxxx RF
        HECT 198 dlrrnteykggynaesetiewlweilkefspeekrlfLqFvTgssrlPlgGfaelhpkftierksk................edetrLPtahTCfnlLk 280
                 dlr++t+y ggyn+ s+ti+ lw +l++f +ee++lfL+FvT++s+ Pl Gf++lhp fti+++++                ++++rLPta TCfnlLk
  KOO24222.1 702 DLRKHTKYAGGYNDLSPTIRDLWAVLHDFGREERALFLKFVTSCSKPPLLGFQHLHPCFTIQCVASdgqdvpsilaffgmgrKETERLPTAATCFNLLK 800
                 ***************************************************************999********************************* PP

                 E---SSHHHHHHHHHHHHHHHH--XXX CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        HECT 281 lpdYsskeilkekLltAieetegFels 307
                 lp+Y +k++l+ekLl+A+++++gF+ls
  KOO24222.1 801 LPNYHTKKVLREKLLYAMKSASGFDLS 827
                 *************************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (827 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1084  (0.0604607); expected 358.6 (0.02)
Passed bias filter:                      650  (0.0362541); expected 358.6 (0.02)
Passed Vit filter:                        48  (0.00267723); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.72u 0.30s 00:00:01.02 Elapsed: 00:00:00.43
# Mc/sec: 5764.11
//
Query:       KOO24223.1  [L=1021]
Description: hypothetical protein Ctob_001547 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1021 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       750  (0.0418317); expected 358.6 (0.02)
Passed bias filter:                      342  (0.0190752); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.70u 0.26s 00:00:00.96 Elapsed: 00:00:00.42
# Mc/sec: 7235.25
//
Query:       KOO24224.1  [L=332]
Description: hypothetical protein Ctob_001550 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.3e-19   68.5   0.0    2.4e-18   66.4   0.0    2.0  1  ABC1      ABC1 family


Domain annotation for each model (and alignments):
>> ABC1  ABC1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.4   0.0   1.3e-22   2.4e-18       2     116 ..      39     170 ..      38     173 .. 0.81

  Alignments for each domain:
  == domain 1  score: 66.4 bits;  conditional E-value: 1.3e-22
        ABC1   2 elgkkleeiFaefd..eePiAaASiaqVhrAklk.sgeeVavKvqrpgvkkriksDlellkllakllkkflkelr.........ldl.eelvdefsksl 87 
                 e+g++++++F  +d  ++PiAaAS++qV+r +l+  g+e+a+Kvqrp++ +++++Dl l++  +++++ f  ++          + +  +l+d+f++  
  KOO24224.1  39 EIGRPVSDVFIGLDrdSTPIAAASLGQVYRCHLReGGHEIALKVQRPDMIRAVSLDLFLMRKGMQAIEWFKMRVLvgllgaadrTPFdVKLLDTFARAS 137
                 689999999987752269****************5589***************************999988776544433322211224799******* PP

        ABC1  88 leEldferEAknaekfrenfaklk....evkvP 116
                 + Eld+++E++n e+f++  ak      +v+vP
  KOO24224.1 138 YLELDYNHEGANLERFASGSAKAAllggRVRVP 170
                 *****************9988877666566666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (332 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       359  (0.0200234); expected 358.6 (0.02)
Passed bias filter:                      320  (0.0178482); expected 358.6 (0.02)
Passed Vit filter:                        11  (0.000613531); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.23s 00:00:00.67 Elapsed: 00:00:00.39
# Mc/sec: 2562.05
//
Query:       KOO24225.1  [L=263]
Description: hydratase decarboxylase 4-oxalocrotonate decarboxylase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.4e-12   47.0   0.0    3.2e-12   46.6   0.0    1.1  1  FAA_hydrolase  Fumarylacetoacetate (FAA) hydrolase family


Domain annotation for each model (and alignments):
>> FAA_hydrolase  Fumarylacetoacetate (FAA) hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.6   0.0   1.8e-16   3.2e-12      58     217 ..      94     261 ..      68     262 .. 0.82

  Alignments for each domain:
  == domain 1  score: 46.6 bits;  conditional E-value: 1.8e-16
                    ...EEEEEEEESS..-B--T.--HHHHHTTEEEEEEEEEEE.-SBGGG---.HHHHHHTGGGEEEEEE-B--B-.STT---S......S-EEEEEE CS
  FAA_hydrolase  58 ldyEvELavvigk..plrev.lsveeAedaiaGytllnDvs.aRdlqaeekaplgwflgksfdtftpiGpwivtpdeledpe......dlelrlrv 143
                     ++E E++vv+g+  p r+   sve+A  a+  ++l  +    R    e++  +  +lgk  dt ++ G ++ ++   +  +      +++++l+v
     KOO24225.1  94 CQIEPEIGVVMGAdlPPRDRpYSVEDAWAAVDSVVLIIECCgQRSTP-EAAEAVTSALGKYADTLSSGGIVLGPRLPAA--QvgiegvKCAVELFV 186
                    578**********8866666799*****************9444443.3333558888888888877666653333222..22244569******* PP

                    TTEEEEEEEG.GGTTTSHHHHHHHHHHHH.......-B-TT-EEEEEES.......S--EE--TT-EEEEEETTTEEEEEEE CS
  FAA_hydrolase 144 ngeevqdsnt.kdmifspaeliahlsagl.......tLepGdliltGTpsgvgaeeeslkflkdgDeveveieglGelrnrV 217
                    n+e+v  ++  +    +pae +a++++ l        L++G+l++tG +        ++k++k+gD+v++e  +lGe++  V
     KOO24225.1 187 NDEKVATGSGkAAPQGGPAESLAWVVNHLnsrpgglYLKAGELVATGQMC-------NTKLIKPGDRVRAEYAQLGEVEMVV 261
                    **********88999*********9999989999999************3.......3589*****************9876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (263 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       304  (0.0169558); expected 358.6 (0.02)
Passed bias filter:                      284  (0.0158403); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.26s 00:00:00.66 Elapsed: 00:00:00.40
# Mc/sec: 1954.02
//
Query:       KOO24226.1  [L=239]
Description: map kinase phosphatase 5 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.3e-08   34.3   0.0    3.6e-08   33.6   0.0    1.3  1  FHA           FHA domain
     0.0077   16.5   0.0       0.02   15.2   0.0    1.6  2  Yop-YscD_cpl  Inner membrane component of T3SS, cytoplasmic d


Domain annotation for each model (and alignments):
>> FHA  FHA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.6   0.0     4e-12   3.6e-08      11      68 ..      35      91 ..      28      92 .. 0.95

  Alignments for each domain:
  == domain 1  score: 33.6 bits;  conditional E-value: 4e-12
                EETTSTTSTTTEEEEEEETTCEEEEEEEESSSSSEEETTEEESTTSEEEE-TTEEEEE CS
         FHA 11 ivlddpsiSrkHalikfdkgsgkvyleDlgSknGtfvNgqrigkgepveLksgdviel 68
                ivl + siSr Ha++++  + g+v + Dlg   Gt   g+++ +++p+ L  g+ +++
  KOO24226.1 35 IVLTHGSISREHATLTVSAS-GSVVVADLGLAQGTKTSGKPLVPNKPHLLPPGSSLTF 91
                8999*************999.9*******************************99987 PP

>> Yop-YscD_cpl  Inner membrane component of T3SS, cytoplasmic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.0   2.2e-06      0.02      29      69 ..      35      76 ..      27      92 .. 0.79
   2 ?   -2.7   0.0      0.83   7.4e+03      20      46 ..     116     142 ..     111     146 .. 0.66

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 2.2e-06
                  EE---TTS-TT-EEEEEE.TTEEEEEE-CESS--EETTEE-S CS
  Yop-YscD_cpl 29 ivLsDkevsrkhlkLeve.eesvrledlgsrngllvngerve 69
                  ivL+  ++sr+h++L+v  + sv++ dlg  +g+   g++  
    KOO24226.1 35 IVLTHGSISREHATLTVSaSGSVVVADLGLAQGTKTSGKPLV 76
                  9****************945679999*******999998876 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 0.83
                   EEES-TT-SEE---TTS-TT-EEEEEE CS
  Yop-YscD_cpl  20 viGsdedcDivLsDkevsrkhlkLeve 46 
                   ++ +++++   L+D  v+++  +L++ 
    KOO24226.1 116 AVARAPQSAASLDDLRVQPVLQVLRAG 142
                   566667777777888887777666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (239 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       302  (0.0168442); expected 358.6 (0.02)
Passed bias filter:                      251  (0.0139997); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.37u 0.24s 00:00:00.61 Elapsed: 00:00:00.37
# Mc/sec: 1919.98
//
Query:       KOO24227.1  [L=1599]
Description: kinesin-like protein klp6-like protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.4e-98  329.9   1.1    2.3e-97  325.9   1.1    2.3  1  Kinesin        Kinesin motor domain
    3.1e-18   66.2   0.3    1.2e-17   64.2   0.0    2.2  2  Microtub_bd    Microtubule binding
    1.9e-08   34.7  22.7    5.2e-07   30.0   0.1    5.0  5  Kinesin_assoc  Kinesin-associated


Domain annotation for each model (and alignments):
>> Kinesin  Kinesin motor domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  325.9   1.1  3.9e-101   2.3e-97       1     333 []      10     373 ..      10     373 .. 0.94

  Alignments for each domain:
  == domain 1  score: 325.9 bits;  conditional E-value: 3.9e-101
                 EE-SSSHHHHTTTTEBCEEEECTCTCEEEEEEEEECTTSCEEEEESEEEETTS-.......................................HHHHHH CS
     Kinesin   1 RvRplnekekeeeeeeeveveeekkeeekkskkenkeeeekkfkFdkvfdeeat.......................................qeevye 60 
                 RvRp+n +eke++++++++++       ++  ++ +++eek+f+Fd  +++++                                        q+ vy 
  KOO24227.1  10 RVRPFNGREKERNAKCIIRMQ-----GPTTIITNPDTQEEKDFAFDFSYWSHDGfdvlnepepdlglpgggynaignrrggpttspfgmeyadQRLVYL 103
                 9***************99886.....4556666677788889999999999988889999*************************************** PP

                 HHHHHHHHHHHTTSEEEEEEEESTTSSHHHHHTBCTTTSBSHHHHHHHHHHHHHHHCTTTHEEEEEEEEEEEEEETTEEEETTSTTTTSTSSEBEEEEC CS
     Kinesin  61 etakplvesvleGynatifaYGqtgsGKTyTmegkeeeeeGiipraleelFesikkekeekekefsvkvsylEiYneeiyDLLeskkskkkkklkired 159
                  + +++++++l+G+n+++faYGqtgsGK+y+  g   +++Gi+p++++++F++ ++  ++ + +++v+ s++EiYne+i+DLL++++ k++++lk+r  
  KOO24227.1 104 GLGQSVLDNALKGFNCCLFAYGQTGSGKSYSFVGY-GSNKGIVPQVCDTVFQKKAELATR-NIDLQVTFSMMEIYNEKIRDLLNPDP-KTNNDLKVRTT 199
                 **********************************8.999***************999988.9************************6.66667****** PP

                 TTSCCEEETTS--EEESSHHHHHHHHHHHHHHHTSTTSSCTSHHCCSEEEEEEEEEEEETTTTTCEEEEEEEEEEEEEEECCCHHHHSSTCHHHHHHHH CS
     Kinesin 160 skkgevyvkgltevevksaeevlellekgeknrkvaetklneeSSRSHavftitleqknlkeeteekvkisklnLvDLAGsErasktgaaegerlkEaa 258
                 ++ g ++v+g + + v +++++ ++++ g ++r+va+t++n++SSR H+++ti ++q  ++e+   +  +s +nLvDLAGsEra++tg a+g+rlkE+a
  KOO24227.1 200 PN-G-TFVEGTKAKAVGTFKQISDTMDAGTASRTVAATQMNATSSRAHTIMTISIKQIITEEGRV-RELRSDMNLVDLAGSERAESTG-ATGDRLKEGA 294
                 *9.6.9***************************************************99876555.6799******************.58******** PP

                 HHHHHHHHHHHHHHHHHHT....CCTSTSCGGGSHHHHHTGGGHSSSSEEEEEEEE-TBGGGHHHHHHHHHHHHHHCTT CS
     Kinesin 259 niNkSLlaLgrvisaLaek....kkskhipYRdSkLTrlLqdsLgGnsktlmivtvspssenleetlstlkfaerakei 333
                 +iNkSL+ Lg+vi+aLa++     k+ ++pYRdSkLT++Lq++LgGnskt+m++ +sp++ n+eetlstl++a+rak+i
  KOO24227.1 295 AINKSLSSLGNVIKALADQsnnpGKKVFVPYRDSKLTQILQSALGGNSKTIMVAALSPADINYEETLSTLRYADRAKQI 373
                 *******************9999999***************************************************98 PP

>> Microtub_bd  Microtubule binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.1      0.81   4.8e+03      23      55 ..       6      50 ..       4      53 .. 0.61
   2 !   64.2   0.0     2e-21   1.2e-17      73     149 .]     108     184 ..      96     184 .. 0.96

  Alignments for each domain:
  == domain 1  score: -2.6 bits;  conditional E-value: 0.81
                 EEEEEEECCCS-T......EEEETT..T........TTTEEEE-S CS
  Microtub_bd 23 Rvfarvrpelesek.....akikfp..e.....eekkkkkefsFd 55
                  v +rvrp + +ek     + i+++  +      +++++k+f Fd
   KOO24227.1  6 KVAVRVRPFNGREKernakCIIRMQgpTtiitnPDTQEEKDFAFD 50
                 566777777777655666644444433145555557888888887 PP

  == domain 2  score: 64.2 bits;  conditional E-value: 2e-21
                  HHHHHHHTT--EEEEEEES................ST-HCHHHHHHHHHHCCTSCCCCEEEEEEEEEEESS-EEETT CS
  Microtub_bd  73 qlvqsaldgynvcifaygqTGsGKtyTmegeeeeagmipraveeifetiselkekgwkyeielqfveiynekvqDlL 149
                   +++ al+g n+c+faygqTGsGK+y   g  +++g +p++ +++f++ +el +++++ +++++++eiynek++DlL
   KOO24227.1 108 SVLDNALKGFNCCLFAYGQTGSGKSYSFVGYGSNKGIVPQVCDTVFQKKAELATRNIDLQVTFSMMEIYNEKIRDLL 184
                  56799***********************************************************************8 PP

>> Kinesin_assoc  Kinesin-associated
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.1       1.2   7.2e+03      63      86 ..     226     250 ..     179     275 .. 0.52
   2 !   15.3   3.1   2.7e-06     0.016       3      81 ..     379     461 ..     376     600 .. 0.74
   3 !   30.0   0.1   8.6e-11   5.2e-07      73     180 ..     679     779 ..     618     780 .. 0.70
   4 ?   -0.8   1.0      0.25   1.5e+03      28      87 ..     884     956 ..     863    1005 .. 0.44
   5 ?    0.6   0.2     0.089   5.3e+02      11      38 ..    1473    1500 ..    1380    1581 .. 0.61

  Alignments for each domain:
  == domain 1  score: -3.1 bits;  conditional E-value: 1.2
  Kinesin_assoc  63 avaglsps.sslsalssraesvssl 86 
                    ++a+ +   + + a+ssra+++ ++
     KOO24227.1 226 GTASRTVAaTQMNATSSRAHTIMTI 250
                    2222222212334444444433322 PP

  == domain 2  score: 15.3 bits;  conditional E-value: 2.7e-06
  Kinesin_assoc   3 inedPnaklvrelkeeverlkdlllaqglediidseaeplke....glvllaseraknlsavtaavaglspssslsalssrae 81 
                    + e+P +k++relke+ e+lk++l a g e    +++++       + ++++++ ++  +++++ v ++s+   ++a ++ ++
     KOO24227.1 379 VMENPTDKMIRELKEDNEKLKKMLEAMGGEGFDPAKFASAVGvvshSGMITEEQMQEAIEKAVQEVKAASAAEKKAAIEKMKQ 461
                    569************************99876665522222212212233333333334444444444444444444444222 PP

  == domain 3  score: 30.0 bits;  conditional E-value: 8.6e-11
  Kinesin_assoc  73 lsalssraesvssleerivfsp..aseeaierlketekiiaelnetWeeklrkteairlereallaelGva.iredGGtlGvfsPkktPhlvnlne 165
                    ++a  +r+  ++  + ++ +++  a+ +  + l++ +  ++el + ++ kl + ea   e+ +ll+ lG++ i e          k tP l nln+
     KOO24227.1 679 QMAAAKRGVGFTVRARSMGSAEmrAKMQIAQALMKNQERMSELTQSFDSKLSQSEA---ESAMLLQSLGLTgITEK-------EMKVTPSLRNLNQ 764
                    4444444443333333333333114456677788888889**************98...88999999998635555.......6799********* PP

  Kinesin_assoc 166 dPlmseCllyyikdG 180
                    dP mse l+yy+k+G
     KOO24227.1 765 DPTMSEMLVYYLKPG 779
                    *************98 PP

  == domain 4  score: -0.8 bits;  conditional E-value: 0.25
  Kinesin_assoc  28 aqglediidseaep.lkeglvll............aseraknlsavtaavaglspssslsalssraesvssle 87 
                    aq+l++ +d ++e+ + ++++ l            a++++ +++ +  ++ ++s++s l  ++ r++s+ s +
     KOO24227.1 884 AQALGTAVDLKVEEqVAKKKAELdaqlkameekfaAENERLRQELAKGGKGSASQQSQLKQMDRRKASIESFS 956
                    5555555554422202221111122333333333222222223333333444444444444444444333322 PP

  == domain 5  score: 0.6 bits;  conditional E-value: 0.089
  Kinesin_assoc   11 lvrelkeeverlkdlllaqglediidse 38  
                     ++++   eve+lk+ll+ +   +  d +
     KOO24227.1 1473 IIKNHESEVEQLKKLLVDECNRQYEDLA 1500
                     4455555555555555555544444433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1599 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1814  (0.101177); expected 358.6 (0.02)
Passed bias filter:                      789  (0.0440069); expected 358.6 (0.02)
Passed Vit filter:                        90  (0.0050198); expected 17.9 (0.001)
Passed Fwd filter:                        30  (0.00167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 1.24u 0.32s 00:00:01.56 Elapsed: 00:00:00.51
# Mc/sec: 9447.42
//
Query:       KOO24228.1  [L=212]
Description: expressed unknown protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.14   12.3   0.0        0.2   11.8   0.0    1.1  1  X         Trans-activation protein X


Domain annotation for each model (and alignments):
>> X  Trans-activation protein X
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   1.1e-05       0.2      38     126 ..      70     163 ..      60     166 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 1.1e-05
                 XXXXXXXXXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-....HH.HHHHHHHHS...--XXXXXXXXXX...XXXXXXXXXXXX CS
           X  38 psssasavsadh.eadlslrrlpvcafssaGpcalrftsarrmestvnahrvlv.kvlakrtlglsalstkdleayikd...qllteweelgee 126
                 + +++sav  d+ ea l+ ++l v + s+    a ++ + r+m++    h   v + +   +   s ls + +  y+ d   q+l ew+e   +
  KOO24228.1  70 SGAAPSAVDEDDgEASLNWNGLWVPVESPRQVVAKVMRALRKMDAPYPLHGAAVaTRYCSPQNRASQLSPQVFARYLEDpwyQILVEWDEAELD 163
                 5688999998773699******************999999******9999765415567778888999**********9777899****98876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (212 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       407  (0.0227007); expected 358.6 (0.02)
Passed bias filter:                      339  (0.0189079); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.28s 00:00:00.67 Elapsed: 00:00:00.42
# Mc/sec: 1529.96
//
Query:       KOO24229.1  [L=737]
Description: phosphatidylinositol-glycan-specific phospholipase d [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.2e-17   62.3  31.1    0.00021   21.3   4.5    6.2  6  FG-GAP           FG-GAP repeat
    6.8e-10   39.2   0.2    1.1e-09   38.6   0.2    1.3  1  Zn_dep_PLPC      Zinc dependent phospholipase C
      2e-08   34.7  18.4     0.0011   19.5   5.2    5.1  6  VCBS             Repeat domain in Vibrio, Colwellia, Bradyrhi
  ------ inclusion threshold ------
       0.26   10.6   1.0         28    4.0   0.1    3.2  3  TcdB_toxin_midN  Insecticide toxin TcdB middle/N-terminal reg


Domain annotation for each model (and alignments):
>> FG-GAP  FG-GAP repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.3   4.5   4.7e-08   0.00021       2      36 ..     256     293 ..     255     293 .. 0.82
   2 !   19.7   2.3   1.5e-07   0.00068       1      37 []     319     373 ..     319     373 .. 0.79
   3 !   21.0   0.2   6.1e-08   0.00027       2      34 ..     399     429 ..     398     432 .. 0.85
   4 ?   -2.7   0.4       1.6   7.2e+03       7      18 ..     443     454 ..     440     469 .. 0.68
   5 ?   -3.6   0.0       3.1   1.4e+04      18      24 ..     488     494 ..     488     495 .. 0.85
   6 !   16.3   0.0   1.8e-06    0.0081       2      28 ..     619     645 ..     618     663 .. 0.76

  Alignments for each domain:
  == domain 1  score: 21.3 bits;  conditional E-value: 4.7e-08
                 TSSEEEESTSSSSS-EEEEEETT..-ETCSTT.BEEEE CS
      FG-GAP   2 GyslavgDvNGDGyaDLavGApe..skggayg.GaVyv 36 
                 G+++a gD++GDG ++ avGA++  s gg    G V v
  KOO24229.1 256 GSAVASGDFDGDGQPEAAVGAMGvgSQGGVPRsGVVFV 293
                 99******************955445677666888876 PP

  == domain 2  score: 19.7 bits;  conditional E-value: 1.5e-07
                 TTSSEEEESTSSSSS-EEEEEE................TT.-ETCSTT.BEEEEE CS
      FG-GAP   1 fGyslavgDvNGDGyaDLavGA................pe.skggayg.GaVyvl 37 
                 fG++l v D N DG +DLavGA                p   ++ + + G+V v+
  KOO24229.1 319 FGSTLVVLDWNLDGIDDLAVGApgwsgwntsdaaaspfPLnGDPTYRNyGRVFVY 373
                 9*********************999988888887764422445555557888887 PP

  == domain 3  score: 21.0 bits;  conditional E-value: 6.1e-08
                 TSSEEEESTSSSSS-EEEEEETT-ETCSTT..BEE CS
      FG-GAP   2 GyslavgDvNGDGyaDLavGApeskggayg..GaV 34 
                 G++la++Dv  DG+ DL++G     + a++  G+V
  KOO24229.1 399 GWALAAADVTSDGHSDLLLG--C--PQANDwdGRV 429
                 9*******************..5..6666666776 PP

  == domain 4  score: -2.7 bits;  conditional E-value: 1.6
                 EESTSSSSS-EE CS
      FG-GAP   7 vgDvNGDGyaDL 18 
                 v Dv+  G+aDL
  KOO24229.1 443 VLDVDAPGVADL 454
                 556665566665 PP

  == domain 5  score: -3.6 bits;  conditional E-value: 3.1
                 EEEEETT CS
      FG-GAP  18 LavGApe 24 
                 L+vGAp+
  KOO24229.1 488 LLVGAPY 494
                 89**997 PP

  == domain 6  score: 16.3 bits;  conditional E-value: 1.8e-06
                 TSSEEEESTSSSSS-EEEEEETT-ETC CS
      FG-GAP   2 GyslavgDvNGDGyaDLavGApeskgg 28 
                 G++l  +Dv  DG +DL++ Ap+++g 
  KOO24229.1 619 GSTLIFADVTADGQPDLITSAPHENGK 645
                 7788889**************884443 PP

>> Zn_dep_PLPC  Zinc dependent phospholipase C
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.6   0.2   2.4e-13   1.1e-09      22     104 ..       9      86 ..       1     102 [. 0.90

  Alignments for each domain:
  == domain 1  score: 38.6 bits;  conditional E-value: 2.4e-13
                  HHHTHHHHHHHHHGGGG..-TT-GGG--BTTTTB-HHHHS-HHHHHHHHHHHHHHHHHC..........T-HHHHHHHHHHHHHHHHH CS
  Zn_dep_PLPC  22 lklnkaalllGsvaPDleylfnasshsykthtkagllgedhhweetgkfllllikklrely.....ksegslklaafllGvlsHyvaD 104
                  +++n +a+  G+ +PD+ y       ++ t  ++++ ge  hw   ++f +++i++ re++     +++ +++l+af++Gv  HyvaD
   KOO24229.1   9 IRNNTDAISGGADFPDFLY-------ACGTYADHHDAGEAAHW---PPFQAAGIRYVRERWpdpalWDDDAKELIAFIFGVSVHYVAD 86 
                  789999*************.......88888888888888***...*************999****9**9****************** PP

>> VCBS  Repeat domain in Vibrio, Colwellia, Bradyrhizobium and Shewanella
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.0       2.4   1.1e+04      20      37 ..     165     181 ..     155     189 .. 0.69
   2 !   13.7   0.2   1.6e-05     0.074      39      61 .]     251     274 ..     232     274 .. 0.76
   3 !    7.4   0.3    0.0015       6.8      40      61 .]     317     338 ..     285     338 .. 0.69
   4 !   19.5   5.2   2.5e-07    0.0011       1      60 [.     327     416 ..     327     417 .. 0.72
   5 ?   -2.6   0.1         2   8.8e+03      52      52 ..     455     455 ..     431     480 .. 0.61
   6 !    7.5   0.0    0.0014       6.3      40      60 ..     616     636 ..     594     637 .. 0.79

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 2.4
        VCBS  20 vyrnngdGtftdvtktsl 37 
                 v+ +n   +ftdvt  sl
  KOO24229.1 165 VFAHNS-TNFTDVTLASL 181
                 444443.47999998766 PP

  == domain 2  score: 13.7 bits;  conditional E-value: 1.6e-05
        VCBS  39 g.sgggtgvavgDlDgDGdlDllv 61 
                 + ++ g +va gD+DgDG+++ +v
  KOO24229.1 251 AlAYHGSAVASGDFDGDGQPEAAV 274
                 25677889************9876 PP

  == domain 3  score: 7.4 bits;  conditional E-value: 0.0015
        VCBS  40 sgggtgvavgDlDgDGdlDllv 61 
                 +  g +++v D++ DG  Dl+v
  KOO24229.1 317 ARFGSTLVVLDWNLDGIDDLAV 338
                 44555699***********987 PP

  == domain 4  score: 19.5 bits;  conditional E-value: 2.5e-07
        VCBS   1 DldgDGrlDlvva..........................ndgglrvyrnngdGtftdvtk.tslgg....sgggtgvavgDlDgDGdlDll 60 
                 D++ DG +Dl v+                          n+g++ vy+++ +G++  v++ + l++    +g g+++a++D+  DG+ Dll
  KOO24229.1 327 DWNLDGIDDLAVGapgwsgwntsdaaaspfplngdptyrNYGRVFVYLGS-KGSGLQVAApIVLTTsnvfTGLGWALAAADVTSDGHSDLL 416
                 9************8888877777777777777666654444556666666.5665555551555556667777888*************98 PP

  == domain 5  score: -2.6 bits;  conditional E-value: 2
        VCBS  52 D 52 
                 D
  KOO24229.1 455 D 455
                 2 PP

  == domain 6  score: 7.5 bits;  conditional E-value: 0.0014
        VCBS  40 sgggtgvavgDlDgDGdlDll 60 
                 +  g ++ ++D+  DG++Dl+
  KOO24229.1 616 GRLGSTLIFADVTADGQPDLI 636
                 44566899***********98 PP

>> TcdB_toxin_midN  Insecticide toxin TcdB middle/N-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.0      0.17   7.6e+02      29      43 ..     257     271 ..     234     288 .. 0.77
   2 ?    4.0   0.1    0.0063        28      30      55 ..     401     426 ..     380     465 .. 0.84
   3 ?    3.1   0.0     0.012        54      30      52 ..     621     643 ..     603     667 .. 0.82

  Alignments for each domain:
  == domain 1  score: -0.7 bits;  conditional E-value: 0.17
  TcdB_toxin_midN  29 tnlslaDldGdGlad 43 
                       ++  +D+dGdG ++
       KOO24229.1 257 SAVASGDFDGDGQPE 271
                      567778999999877 PP

  == domain 2  score: 4.0 bits;  conditional E-value: 0.0063
  TcdB_toxin_midN  30 nlslaDldGdGladlvltipsagtga 55 
                      +l +aD+  dG +dl+l  p+a+ ++
       KOO24229.1 401 ALAAADVTSDGHSDLLLGCPQANDWD 426
                      6889*****************99554 PP

  == domain 3  score: 3.1 bits;  conditional E-value: 0.012
  TcdB_toxin_midN  30 nlslaDldGdGladlvltipsag 52 
                       l +aD+  dG +dl++  p+ +
       KOO24229.1 621 TLIFADVTADGQPDLITSAPHEN 643
                      4789****************998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (737 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       258  (0.0143901); expected 358.6 (0.02)
Passed bias filter:                      187  (0.01043); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.54u 0.30s 00:00:00.84 Elapsed: 00:00:00.45
# Mc/sec: 4899.14
//
Query:       KOO24230.1  [L=915]
Description: serine threonine-protein kinase edr1-like protein, partial [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.4e-47  161.0   0.0    4.9e-47  160.5   0.0    1.2  1  Pkinase         Protein kinase domain
    1.9e-42  145.3   0.0    3.2e-42  144.6   0.0    1.3  1  Pkinase_Tyr     Protein tyrosine kinase
    4.7e-06   25.6   0.0    7.8e-06   24.9   0.0    1.3  1  Pkinase_fungal  Fungal protein kinase
     0.0025   17.2   0.0      0.004   16.5   0.0    1.2  1  Kinase-like     Kinase-like
  ------ inclusion threshold ------
       0.13   12.2   0.0       0.28   11.0   0.0    1.6  1  APH             Phosphotransferase enzyme family


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  160.5   0.0   1.4e-50   4.9e-47       2     258 ..     370     633 ..     369     638 .. 0.87

  Alignments for each domain:
  == domain 1  score: 160.5 bits;  conditional E-value: 1.4e-50
                 EEEEEEEEESSEEEEEEEETTTTEEEEEEEEECHCHCHHHH.HHHHHHHHHHHHHSCTTB--EEEEEEESSEEE.EEEE--TTEBHHHHHHHHSS--HH CS
     Pkinase   2 ekleklGeGsfGkVykaveketgkivAvKkikkekakkkke.kkvlrEikilkklkhpnivrlyevfeekdely.lvleyveggeladllerkgslsee 98 
                 e leklGeG+fG+V  +    +    AvK+++++++++     ++l+E   +  l+hpn+v ++++ +++ +++ +vle++e   l ++l++++ ++e+
  KOO24230.1 370 ELLEKLGEGTFGTVHACS--FNATPCAVKQLREDRESSAALlADMLQEHDTMMGLRHPNVVLMLGIATDNVQRVgIVLELLEIS-LSEFLHQSSGYAEH 465
                 5689*************9..688899***********99989**************************9866666*******66.99999987777777 PP

                 .....HHHHHHHHHHHHHHHHHHTTEE-SS-SGGGEEEETTTEEEE-SGTTSEESSSSCS..BCTTTSCGGGS-HHHHTTSCBSHHHHHHHHHHHHHHH CS
     Pkinase  99 .....eakkiakqilegleylHskgiiHrDlKpeNiLidekgelKitDFGlakelesssk..ltsfvgtseYlAPEvlkeneyskkvDvWslGvilyel 190
                       + +ia+ +++g++ylH ++++HrDlKp N+L++++ + K++DFG +++ + +s    + + gt+ Y+APEv +++ +s++ DvWs G++++ +
  KOO24230.1 466 rtwraSLLSIASDVAKGVAYLHFNNLLHRDLKPGNVLLSDSWVAKVADFGSSAKGKPGSAaeGEGIHGTPPYMAPEVARGEAHSAALDVWSFGCLIVHM 564
                 666667779******************************9999**************9987778899******************************** PP

                 HHSS-STTTSSHHHHHHHHHHTHHHHHHHCT.........SHH...HHHTTS-HHHHHHHHHHT-SSGCCSTTHHHH CS
     Pkinase 191 ltgkppfsgekgkekvekeldqlekilkilg.........etkeklpeaseiseeakdllkkllkkdpkkRltaeel 258
                  t +pp++g k k+ +  ++ +++      +           + + +++++++++++ l k++++ dpk+R+ +  +
  KOO24230.1 565 ATLRPPYYGLKCKTAM--DIVRVV------QrgdvspvqvLLDDTDRREYKCPPSILALAKQCCQSDPKQRPDMPAI 633
                 ********76665522..222222......11222224345678999999*********************988765 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  144.6   0.0   8.8e-46   3.2e-42       1     256 [.     369     634 ..     369     637 .. 0.86

  Alignments for each domain:
  == domain 1  score: 144.6 bits;  conditional E-value: 8.8e-46
                  EEEEEEEEEESSEEEEEEEEETTTTSSEEEEEEEEESTTSSHHH..HHHHHHHHHHHHTS-BTTB--EEEEEE.SSSSEEEEEE--TTEBHHHHHHHT CS
  Pkinase_Tyr   1 lelgkklGeGafGkVvegtlkgekekkevkVavKtlkeeateee..keelleeakimkklkhpnivkllgvct.keepllivteyvkgGdLlkfLrkk 95 
                  lel +klGeG+fG+V+ ++ +       + +avK+l+e+ +++    +++l+e ++m+ l+hpn+v +lg+ t + +++ iv+e+++  +L++fL+++
   KOO24230.1 369 LELLEKLGEGTFGTVHACSFN------ATPCAVKQLREDRESSAalLADMLQEHDTMMGLRHPNVVLMLGIATdNVQRVGIVLELLEI-SLSEFLHQS 459
                  67899***************9......99*******998887776689*************************6677799******98.8*******9 PP

                  ...CTTTSBHHHHHHHHHHHHHHHHHHHHTTEEEST-SGGGEEEEETTEEEE-STTTHEETTTSSEEEETTSSTSGGGGS-HHHHHHSEEEHHHHHHH CS
  Pkinase_Tyr  96 ...ekekltlkdllsfalqvAkGmeyLeskklvHrdlaarNvLlsenkvvkisDfGLardiekddeyvkkeeaklpvkWmapEslkekkftsksDvWs 190
                     +++++   +lls+a +vAkG++yL+ ++l+Hrdl   NvLls++ v+k++DfG + +  k  +  + e+ +    +mapE+ + +  + + DvWs
   KOO24230.1 460 sgyAEHRTWRASLLSIASDVAKGVAYLHFNNLLHRDLKPGNVLLSDSWVAKVADFGSSAKG-KPGSAAEGEGIHGTPPYMAPEVARGEAHSAALDVWS 556
                  777677778889********************************************99998.6666677888888999******************** PP

                  HHHHHHHHHTTSSGTTTTSHHHH...HHHHHHTTEE..........S-BBTTSBHHHHHHHHHHT-SSGGGS--HHHHH CS
  Pkinase_Tyr 191 fGvllwEiftlgespypglknee...vleklkegkr..........lekpekcpeelyelmkkcweedpeeRptfselv 256
                  fG l+  ++t  + py glk ++   +++ +++g             ++  kcp+++  l k+c ++dp++Rp++ ++ 
   KOO24230.1 557 FGCLIVHMAT-LRPPYYGLKCKTamdIVRVVQRGDVspvqvllddtDRREYKCPPSILALAKQCCQSDPKQRPDMPAIA 634
                  *********9.68999998655522255555555543333322221345678**********************98875 PP

>> Pkinase_fungal  Fungal protein kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.9   0.0   2.2e-09   7.8e-06     305     400 ..     469     557 ..     457     565 .. 0.88

  Alignments for each domain:
  == domain 1  score: 24.9 bits;  conditional E-value: 2.2e-09
  Pkinase_fungal 305 pkellealrDaIkghrsLflkagiLHrDiSenNilitdskkegerkglLiDLDlakelsddssesgarertGTleFmaievlkgeeHsyrhDLES 399
                     +  ll+   D+ kg   L+   ++LHrD   +N+l+      ++    ++D+    + +  s+++g +   GT+++ma ev +ge Hs   D+ S
      KOO24230.1 469 RASLLSIASDVAKGVAYLH-FNNLLHRDLKPGNVLLS-----DSWVAKVADFGSSAKGKPGSAAEG-EGIHGTPPYMAPEVARGEAHSAALDVWS 556
                     567999999**********.99***************.....668889*****9999997666666.7889*************99******999 PP

  Pkinase_fungal 400 f 400
                     f
      KOO24230.1 557 F 557
                     8 PP

>> Kinase-like  Kinase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.0   1.1e-06     0.004     145     259 ..     471     580 ..     434     601 .. 0.75

  Alignments for each domain:
  == domain 1  score: 16.5 bits;  conditional E-value: 1.1e-06
  Kinase-like 145 arlllTlqlirlaanLqakglvhgkftvdnllldekgglmlggftaLvragtkvvlsevekgf.aPpEllgsrggytrknktkmthkldaWqlGlviy 241
                  + l +  ++ + +a+L+++ l+h ++++ n+ll      ++ +f++  + g+ + ++e e  +  Pp +  +       +    + +ld+W  G  i 
   KOO24230.1 471 SLLSIASDVAKGVAYLHFNNLLHRDLKPGNVLLSDSWVAKVADFGSSAK-GKPGSAAEGEGIHgTPPYMAPE-VA----RGEAHSAALDVWSFGCLIV 562
                  4455666777889*********************************876.5556657777666245555555.33....5667899************ PP

  Kinase-like 242 riwclklPltlateeake 259
                   ++ l  P    + +   
   KOO24230.1 563 HMATLRPPYYGLKCKTAM 580
                  ****99998666555555 PP

>> APH  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   7.9e-05      0.28     163     199 ..     486     520 ..     383     523 .. 0.79

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 7.9e-05
                 SS-EEEE-SS-SGGGEEEC..TTEEEEE---TT-EEE CS
         APH 163 elptvllHgDlhpgNllvdpddgrvtGviDfedaglg 199
                      llH+Dl+pgN+l+   d  v  v Df+ +  g
  KOO24230.1 486 LHFNNLLHRDLKPGNVLLS--DSWVAKVADFGSSAKG 520
                 555669*************..7777788888876655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (915 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       709  (0.0395449); expected 358.6 (0.02)
Passed bias filter:                      330  (0.0184059); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.68u 0.30s 00:00:00.98 Elapsed: 00:00:00.45
# Mc/sec: 6074.72
//
Query:       KOO24231.1  [L=786]
Description: hypothetical protein Ctob_004107 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.9e-05   23.6   0.0    9.9e-05   22.6   0.0    1.5  1  PHM7_cyt  Cytosolic domain of 10TM putative phosphate transpo


Domain annotation for each model (and alignments):
>> PHM7_cyt  Cytosolic domain of 10TM putative phosphate transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.6   0.0   5.5e-09   9.9e-05     109     175 ..     290     353 ..     269     354 .. 0.78

  Alignments for each domain:
  == domain 1  score: 22.6 bits;  conditional E-value: 5.5e-09
    PHM7_cyt 109 eieeerekvkkkp..lgaaFvtfesersaaavakqakcaaqiqqssnptlkpkkwtvelAPePrDviWe 175
                  +++ re+++ ++  l++aF tf ++++ +av+++a      + ++ p+  p+++ v++ P+PrDviW+
  KOO24231.1 290 ALNQVRESTRDERhlLDYAFLTFTNSKAKTAVLDAAR-----HGTLFPEGVPQSLGVQPGPNPRDVIWS 353
                 4566777775544468********9999988875432.....334555446789**************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (786 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       680  (0.0379274); expected 358.6 (0.02)
Passed bias filter:                      412  (0.0229795); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.66u 0.28s 00:00:00.94 Elapsed: 00:00:00.45
# Mc/sec: 5271.88
//
Query:       KOO24232.1  [L=431]
Description: hypothetical protein Ctob_004106 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (431 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       652  (0.0363657); expected 358.6 (0.02)
Passed bias filter:                      297  (0.0165653); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.47u 0.27s 00:00:00.74 Elapsed: 00:00:00.42
# Mc/sec: 3074.91
//
Query:       KOO24233.1  [L=455]
Description: e3 ubiquitin-protein ligase amfr, partial [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    4.5e-10   39.7  13.8    9.7e-10   38.6  13.8    1.6  1  zf-RING_2      Ring finger domain
    4.6e-09   36.4   9.7      1e-08   35.3   9.7    1.6  1  zf-rbx1        RING-H2 zinc finger domain
    1.1e-08   34.7   9.1    2.2e-08   33.8   9.1    1.5  1  zf-C3HC4       Zinc finger, C3HC4 type (RING finger)
    7.2e-08   32.1  13.8    1.4e-07   31.2  13.8    1.5  1  zf-C3HC4_2     Zinc finger, C3HC4 type (RING finger)
    4.1e-07   29.9   4.7    4.6e-07   29.8   3.5    1.8  1  zf-RING_UBOX   RING-type zinc-finger
      5e-07   29.5   9.2      5e-07   29.5   9.2    1.9  2  zf-C3HC4_3     Zinc finger, C3HC4 type (RING finger)
    1.6e-05   24.5   5.3    4.6e-05   23.1   5.3    1.8  1  zf-RING_11     RING-like zinc finger
    1.8e-05   24.7   5.9    3.9e-05   23.6   5.9    1.5  1  zf-ANAPC11     Anaphase-promoting complex subunit 11 RING-H2 
     0.0001   22.2  11.5    0.00022   21.1  11.5    1.6  1  zf-RING_5      zinc-RING finger domain
    0.00013   21.7   7.8     0.0003   20.6   7.8    1.6  1  Prok-RING_4    Prokaryotic RING finger family 4
  ------ inclusion threshold ------
      0.071   12.7   9.4       0.17   11.5   9.4    1.6  1  Zn_ribbon_17   Zinc-ribbon, C4HC2 type
       0.12   12.3   2.9       0.19   11.6   0.1    2.1  2  Rad50_zn_hook  Rad50 zinc hook motif
       0.17   12.0   9.2       0.38   11.0   9.2    1.6  1  zf-C3HC4_4     zinc finger of C3HC4-type, RING
       0.45   10.4   4.9       0.77    9.6   4.9    1.3  1  zf-Nse         Zinc-finger of the MIZ type in Nse subunit
       0.47   10.6   8.5        1.4    9.1   8.5    1.9  1  RINGv          RING-variant domain
        8.6    6.1  11.8        1.6    8.5   4.4    2.6  2  zf-P11         P-11 zinc finger


Domain annotation for each model (and alignments):
>> zf-RING_2  Ring finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.6  13.8   8.7e-13   9.7e-10       2      44 .]     357     397 ..     356     397 .. 0.89

  Alignments for each domain:
  == domain 1  score: 38.6 bits;  conditional E-value: 8.7e-13
   zf-RING_2   2 eCpICleelssadsvlllpCgHvfhreClerwlrssstCPlCr 44 
                  C+IC e++ +   +++lpCgH fh++Cl+ wl++s++CP+Cr
  KOO24233.1 357 CCAICREPMAD--AATVLPCGHYFHCTCLRSWLEQSHSCPVCR 397
                 6********75..555569***********************9 PP

>> zf-rbx1  RING-H2 zinc finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.3   9.7   9.1e-12     1e-08       9      55 .]     353     397 ..     351     397 .. 0.92

  Alignments for each domain:
  == domain 1  score: 35.3 bits;  conditional E-value: 9.1e-12
     zf-rbx1   9 eleeacieckapgdeecpvvlGeCgHaFHlhCiskWlktrkvCPlcr 55 
                 +l+++c  c++p  +    vl  CgH FH  C+++Wl+++++CP+cr
  KOO24233.1 353 NLDDCCAICREPMAD-AATVL-PCGHYFHCTCLRSWLEQSHSCPVCR 397
                 6799**********9.77777.9***********************8 PP

>> zf-C3HC4  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.8   9.1     2e-11   2.2e-08       1      41 []     358     396 ..     358     396 .. 0.98

  Alignments for each domain:
  == domain 1  score: 33.8 bits;  conditional E-value: 2e-11
                 -TTT-S--SS-E.E-TTS--B-CHHHHHHHHCTSSB--TTT CS
    zf-C3HC4   1 CpiCleeakepnelleCkHsfCskCirkilksrkkvkCPlC 41 
                 C+iC e ++++ ++l+C+H f+++C+r++l+  ++ +CP+C
  KOO24233.1 358 CAICREPMADAATVLPCGHYFHCTCLRSWLE--QSHSCPVC 396
                 *******************************..8899**** PP

>> zf-C3HC4_2  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.2  13.8   1.2e-10   1.4e-07       2      40 .]     358     396 ..     357     396 .. 0.99

  Alignments for each domain:
  == domain 1  score: 31.2 bits;  conditional E-value: 1.2e-10
  zf-C3HC4_2   2 CpiCldmlkdpsvvtpCgHvfCqkCilrsLeekneCPlC 40 
                 C+iC + + d+ +v pCgH f+  C++ +Le++ +CP+C
  KOO24233.1 358 CAICREPMADAATVLPCGHYFHCTCLRSWLEQSHSCPVC 396
                 *************************************** PP

>> zf-RING_UBOX  RING-type zinc-finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.8   3.5   4.1e-10   4.6e-07       1      39 []     358     394 ..     358     394 .. 0.95

  Alignments for each domain:
  == domain 1  score: 29.8 bits;  conditional E-value: 4.1e-10
  zf-RING_UBOX   1 CpIClelftdP.lvlpCGHtFCreClwelskslegafkCP 39 
                   C IC+e++ d  +vlpCGH F+  Cl   +++le++ +CP
    KOO24233.1 358 CAICREPMADAaTVLPCGHYFHCTCL---RSWLEQSHSCP 394
                   ********9887778***********...9*********9 PP

>> zf-C3HC4_3  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.1       3.5   3.9e+03      24      31 ..      76      83 ..      74      87 .. 0.77
   2 !   29.5   9.2   4.5e-10     5e-07       2      47 ..     355     400 ..     354     402 .. 0.89

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 3.5
                EE-HHHHH CS
  zf-C3HC4_3 24 vlCeeCae 31
                ++C+ Ca 
  KOO24233.1 76 AACSGCAL 83
                57999986 PP

  == domain 2  score: 29.5 bits;  conditional E-value: 4.5e-10
                 GSB-TTTSSSBS-.EEETTEEEEEE-HHHHHHHHHTT-B-TTT--B- CS
  zf-C3HC4_3   2 deeCviClerprn.vvllpCgHlvlCeeCaekllkrkkkCpiCrrpi 47 
                 d++C iC e  ++ +++lpCgH + C +C++++l+++++Cp+Cr++ 
  KOO24233.1 355 DDCCAICREPMADaATVLPCGHYFHC-TCLRSWLEQSHSCPVCRASL 400
                 689******988746889*****999.6****************976 PP

>> zf-RING_11  RING-like zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.1   5.3   4.1e-08   4.6e-05       2      29 .]     358     383 ..     358     383 .. 0.91

  Alignments for each domain:
  == domain 1  score: 23.1 bits;  conditional E-value: 4.1e-08
  zf-RING_11   2 CsICLeefkpgqalfilpCsHtFHfkCI 29 
                 C+IC e++++  a ++lpC+H+FH+ C+
  KOO24233.1 358 CAICREPMAD--AATVLPCGHYFHCTCL 383
                 ********65..8888***********5 PP

>> zf-ANAPC11  Anaphase-promoting complex subunit 11 RING-H2 finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.6   5.9   3.4e-08   3.9e-05      30      81 ..     353     400 ..     351     403 .. 0.90

  Alignments for each domain:
  == domain 1  score: 23.6 bits;  conditional E-value: 3.4e-08
                 BTTS--TTCSTTTTTS-EEEBTTS-EEEHHHHHHHHHHHSTSSB-TTTSSB- CS
  zf-ANAPC11  30 sfdGtcpsckfpGddcplvlGkckhnfhlhcilkwletetskglcpmcrqtf 81 
                 + d +c  c+ p  d + vl  c h fh  c+  wle+++s   cp+cr ++
  KOO24233.1 353 NLDDCCAICREPMADAATVL-PCGHYFHCTCLRSWLEQSHS---CPVCRASL 400
                 5799************9998.5***************9876...****9876 PP

>> zf-RING_5  zinc-RING finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.1  11.5     2e-07   0.00022       2      43 ..     358     397 ..     357     398 .. 0.97

  Alignments for each domain:
  == domain 1  score: 21.1 bits;  conditional E-value: 2e-07
   zf-RING_5   2 CnkCfeklskeekfyltsCgHifCekClkkllekeavCpiCr 43 
                 C +C+e++   +++ +++CgH+f+ +Cl+  le+++ Cp+Cr
  KOO24233.1 358 CAICREPM--ADAATVLPCGHYFHCTCLRSWLEQSHSCPVCR 397
                 9*******..*******************************9 PP

>> Prok-RING_4  Prokaryotic RING finger family 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.6   7.8   2.7e-07    0.0003       1      42 [.     358     402 ..     358     405 .. 0.83

  Alignments for each domain:
  == domain 1  score: 20.6 bits;  conditional E-value: 2.7e-07
  Prok-RING_4   1 CvlCgeq.ekkailepCgHlvCkeCfdsk..dlssCPlCqrrisk 42 
                  C +C+e     a + pCgH +  +C+ s+  ++ sCP+C+  + +
   KOO24233.1 358 CAICREPmADAATVLPCGHYFHCTCLRSWleQSHSCPVCRASLTD 402
                  999*99845567899*****9889*****86666******98755 PP

>> Zn_ribbon_17  Zinc-ribbon, C4HC2 type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   9.4   0.00015      0.17       6      47 ..     357     395 ..     352     400 .. 0.85

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.00015
  Zn_ribbon_17   6 sCayCelavkgrvvlcgvCeHvlHasCarewfenddlaeCps 47 
                    Ca+C  ++    ++   C+H  H  C+r+w+e+ +  +Cp+
    KOO24233.1 357 CCAICREPMADAATV-LPCGHYFHCTCLRSWLEQSH--SCPV 395
                   589999998887766.56*****************9..8987 PP

>> Rad50_zn_hook  Rad50 zinc hook motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.3   0.6      0.55   6.2e+02      13      29 ..     349     365 ..     348     368 .. 0.86
   2 ?   11.6   0.1   0.00017      0.19      15      32 ..     387     403 ..     385     404 .. 0.90

  Alignments for each domain:
  == domain 1  score: 0.3 bits;  conditional E-value: 0.55
                    HHHTT-SEE-TTT--EE CS
  Rad50_zn_hook  13 eelkeakgcCPlCgRel 29 
                    eel++ ++cC  C  ++
     KOO24233.1 349 EELANLDDCCAICREPM 365
                    799*******9998776 PP

  == domain 2  score: 11.6 bits;  conditional E-value: 0.00017
                    HTT-SEE-TTT--EE-HH CS
  Rad50_zn_hook  15 lkeakgcCPlCgReldee 32 
                    l++++ +CP+C  +l+++
     KOO24233.1 387 LEQSH-SCPVCRASLTDD 403
                    67888.*********997 PP

>> zf-C3HC4_4  zinc finger of C3HC4-type, RING
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   9.2   0.00034      0.38       1      42 []     358     396 ..     358     396 .. 0.87

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00034
  zf-C3HC4_4   1 CPiCldYLekPvs.leCGhsfClsCisslqkepdgeqllCplC 42 
                 C iC++ + + ++ l+CGh f  +C+ s+ +++    ++Cp+C
  KOO24233.1 358 CAICREPMADAATvLPCGHYFHCTCLRSWLEQS----HSCPVC 396
                 9999999998776379***********999988....67***9 PP

>> zf-Nse  Zinc-finger of the MIZ type in Nse subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   4.9   0.00069      0.77       9      56 ..     353     396 ..     349     397 .. 0.93

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 0.00069
                 BXXSB-TTTSSB-SSEEEESSS--EEEHHHHHHHCTTTS-EE-SCCC- CS
      zf-Nse   9 rislkCPltlqpfeePvtskkCpHvFEreaIlelikrkktvkCPvagC 56 
                 + + +C + ++p+ +  t   C H F  + + + +  +++  CPv  C
  KOO24233.1 353 NLDDCCAICREPMADAATVLPCGHYFHCTCLRSWL--EQSHSCPV--C 396
                 57899******************************..9999****..7 PP

>> RINGv  RING-variant domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.1   8.5    0.0013       1.4       1      48 []     358     396 ..     358     396 .. 0.90

  Alignments for each domain:
  == domain 1  score: 9.1 bits;  conditional E-value: 0.0013
                 ETTTTEE-SSSS--B-SS--STCCCSB-HHHHHHHHHHTCT-SB-TTT CS
       RINGv   1 CriCleeeeeseplispCkCrGslklvHesClekWldekeantqCeiC 48 
                 C iC+e ++++   + pC   G  +++H +Cl  Wl++   +++C +C
  KOO24233.1 358 CAICREPMADAA-TVLPC---G--HYFHCTCLRSWLEQ---SHSCPVC 396
                 99****988877.89999...4..9***********99...8899999 PP

>> zf-P11  P-11 zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.4   0.6      0.23   2.5e+02      35      45 ..     355     365 ..     351     370 .. 0.83
   2 ?    8.5   4.4    0.0014       1.6      20      45 ..     375     400 ..     365     402 .. 0.85

  Alignments for each domain:
  == domain 1  score: 1.4 bits;  conditional E-value: 0.23
                 SSBETTTSSB- CS
      zf-P11  35 serCpiCkkPL 45 
                  + C iC+ P+
  KOO24233.1 355 DDCCAICREPM 365
                 578******97 PP

  == domain 2  score: 8.5 bits;  conditional E-value: 0.0014
                 SSEEEHHHHHHHHHHSSBETTTSSB- CS
      zf-P11  20 dHYLClrClqllLsvserCpiCkkPL 45 
                  HY    Cl+  L  s  Cp+C+  L
  KOO24233.1 375 GHYFHCTCLRSWLEQSHSCPVCRASL 400
                 5999999***************9866 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (455 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       684  (0.0381505); expected 358.6 (0.02)
Passed bias filter:                      317  (0.0176809); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                        16  (0.000892409); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              16  [number of targets reported over threshold]
# CPU time: 0.49u 0.27s 00:00:00.76 Elapsed: 00:00:00.44
# Mc/sec: 3137.51
//
Query:       KOO24234.1  [L=293]
Description: hypothetical protein Ctob_004104 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (293 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       370  (0.020637); expected 358.6 (0.02)
Passed bias filter:                      342  (0.0190752); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.43u 0.26s 00:00:00.69 Elapsed: 00:00:00.41
# Mc/sec: 2166.05
//
Query:       KOO24235.1  [L=635]
Description: hypothetical protein Ctob_004109 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.7e-14   52.6   0.0    6.5e-14   51.8   0.0    1.4  1  RAP        RAP domain
    1.3e-12   48.3   0.0    3.6e-12   46.8   0.0    1.8  1  dsrm       Double-stranded RNA binding motif
    6.5e-07   29.4   0.0    1.9e-06   28.0   0.0    1.7  2  MTES_1575  REase_MTES_1575
    1.4e-06   28.4   0.0    2.9e-06   27.4   0.0    1.6  1  DND1_DSRM  double strand RNA binding domain from DEAD END PRO
  ------ inclusion threshold ------
      0.098   12.5   0.0        0.2   11.5   0.0    1.4  1  DUF559     Protein of unknown function (DUF559)


Domain annotation for each model (and alignments):
>> RAP  RAP domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.8   0.0   1.8e-17   6.5e-14       1      57 [.     564     620 ..     564     621 .. 0.88

  Alignments for each domain:
  == domain 1  score: 51.8 bits;  conditional E-value: 1.8e-17
         RAP   1 IevdGpshyyknsknltgktklKkriLsklGykvinIpyfeWnql.knkedkveylkk 57 
                 IevdGpsh+ + +    g t lK+r L++ G++v+ IpyfeW+ l +n +   eyl +
  KOO24235.1 564 IEVDGPSHFTQVG-TPSGATLLKRRQLRATGWNVVAIPYFEWYRLdRNVQREDEYLCR 620
                 9*******87777.458****************************7777777779976 PP

>> dsrm  Double-stranded RNA binding motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.8   0.0     1e-15   3.6e-12       1      67 []      95     165 ..      95     165 .. 0.88

  Alignments for each domain:
  == domain 1  score: 46.8 bits;  conditional E-value: 1e-15
                 HHHHHHHHHHHTTSEEEEEEEEEESSTSSSEEEEEEEEE.....TTEEEEEEEES.SHHHHHHHHHHHHHHHH CS
        dsrm   1 pKskLqeycqkkgkppnyeyvseegpphslpkFvvtvkv.....ngklygsGvgs.nKKeAeqsAAedalekL 67 
                 +Ks L+e+cq++ +++ ye+ s++gp+h+ p+++++v++       +++  G+g+ nK+ Ae  AA +al+ L
  KOO24235.1  95 SKSVLNELCQQRQWKLRYEVESQQGPNHA-PEYTIRVVIertgqPAEHF-VGTGApNKRIAEATAATEALRRL 165
                 59***************************.*********7666533333.788877**************976 PP

>> MTES_1575  REase_MTES_1575
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.6   0.0       3.6   1.3e+04       5      32 ..      98     133 ..      96     138 .. 0.46
   2 !   28.0   0.0   5.2e-10   1.9e-06       9      85 ..     534     609 ..     527     615 .. 0.79

  Alignments for each domain:
  == domain 1  score: -3.6 bits;  conditional E-value: 3.6
   MTES_1575   5 VaeaLrer.gykvkpqvgvg.......gfriDlvve 32 
                 V+++L ++  +k++ +v+ +       +++i +v+e
  KOO24235.1  98 VLNELCQQrQWKLRYEVESQqgpnhapEYTIRVVIE 133
                 555555433334433333332233444566666665 PP

  == domain 2  score: 28.0 bits;  conditional E-value: 5.2e-10
   MTES_1575   9 Lrergykvkpqvg.vggfriDlvvedpgkyllaIecdgdkyhss.keardrdierqevLerlGWkilRiwssdwyrnpe 85 
                 L++ g+  + +    +g++iDl+v ++   ++aIe+dg+++ ++  +     +++++ L++ GW+++ i + +wyr  +
  KOO24235.1 534 LERLGLISQSELTtDEGYSIDLAVLRE---RVAIEVDGPSHFTQvGTPSGATLLKRRQLRATGWNVVAIPYFEWYRLDR 609
                 55555554444441468**********...*********665553788889************************9654 PP

>> DND1_DSRM  double strand RNA binding domain from DEAD END PROTEIN 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.4   0.0   8.1e-10   2.9e-06       2      79 ..      94     165 ..      93     166 .. 0.87

  Alignments for each domain:
  == domain 1  score: 27.4 bits;  conditional E-value: 8.1e-10
   DND1_DSRM   2 savqlLeelCeknkwgsPvYelhseagpdgkllflYkVvipgietslkgvvvifmpdklastkeeAkelaAeqvLeaL 79 
                 +++++L+elC++++w    Ye++s++gp+++   + +Vvi+++ ++ +     f  ++ a++k  A+  aA ++L+ L
  KOO24235.1  94 NSKSVLNELCQQRQWKL-RYEVESQQGPNHAPEYTIRVVIERTGQPAEH----FV-GTGAPNKRIAEATAATEALRRL 165
                 7899***********99.9**************************9664....33.4667888888889999999877 PP

>> DUF559  Protein of unknown function (DUF559)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   5.5e-05       0.2      43      86 ..     550     597 ..     541     614 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 5.5e-05
                 TEEEEEEETTTTEEEEEE-------....----HHHHHHHHHTT-EEE CS
      DUF559  43 sYivDfvclkaklivelDGaqhdee....eeyDaeRtelLeslGftvl 86 
                  Y +D + l++++ +e+DG  h  +    +     + + L ++G++v+
  KOO24235.1 550 GYSIDLAVLRERVAIEVDGPSHFTQvgtpSGATLLKRRQLRATGWNVV 597
                 699*******************99965444555677788999999987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (635 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       621  (0.0346366); expected 358.6 (0.02)
Passed bias filter:                      399  (0.0222544); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.57u 0.26s 00:00:00.83 Elapsed: 00:00:00.43
# Mc/sec: 4391.79
//
Query:       KOO24236.1  [L=559]
Description: serine carboxypeptidase-like 20-like protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.2e-79  268.7   0.0    4.2e-61  207.6   0.0    2.1  2  Peptidase_S10  Serine carboxypeptidase


Domain annotation for each model (and alignments):
>> Peptidase_S10  Serine carboxypeptidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  207.6   0.0   2.3e-65   4.2e-61       1     341 [.      27     414 ..      27     421 .. 0.87
   2 !   59.1   0.0   2.8e-20     5e-16     342     419 .]     465     540 ..     460     540 .. 0.94

  Alignments for each domain:
  == domain 1  score: 207.6 bits;  conditional E-value: 2.3e-65
                    TTCSST-SSEEEEEEEECSTTT....TEEEEEEEEE-SSGTTTS-EEEEE--TTTB-THHHHHHTTSSEEEE..........TTTTSEEEE-TT-G CS
  Peptidase_S10   1 PgleetvnfkqysGYldveeee....dkslFYwfveseknpeedplvlWLnGGPGCsSldGlleElGPfrvn..........kdstkkleenpysW 82 
                    Pg ++++++++ sGYld++ +     + +++Y f ese +p++dpl++W nGGPG+ S  G+++ElGP+ +           +++ ++l++np +W
     KOO24236.1  27 PGWSGKLPSRMFSGYLDATPQGetvyKLHMHYTFWESEGDPAKDPLLIWSNGGPGAGSEFGAFTELGPLLLYdasmqtkeynTTGIPTLFQNPQAW 122
                    78889999********8875441111569****************************************998899999998877889********* PP

                    GGCSEEEEE--STTSTT-EETTSSG......S--SHHHHHHHHHHHHHHHHHHSTCGTTSEEEEEEETTHHHHHHHHHHHHHTHCCH--SSTSEEE CS
  Peptidase_S10  83 nkvanvlfldqPvGvGFSysntksd......vktddeevaedlyefLkkffekfpeyksrdfyitGESYaGhyvPalakeilkknkkekkkkinLk 172
                    +kva++l  d+P  vG+Sy n++         ++dd ++a+ +++f+++f++ fpey+++d+y++GESYaG+y+P+la+eil++ ++   +   L+
     KOO24236.1 123 TKVASLLIYDAPPPVGYSYCNNNPGgdgyscGDWDDFRTARSVHTFVENFMKAFPEYAQHDLYLSGESYAGVYIPMLAREILQDTSSP--TAAHLR 216
                    ********************9999889988889999*************************************************886..799*** PP

                    EEEEESE-SBHHHHHCCHHH.........HHHHTTSSHHHHHHHHHHHHEET.HHHHHHHHHHHHHHHHHHHHHHHHHCHCEETTETTSEETTSSE CS
  Peptidase_S10 173 GlligNglideaeqvnsyve.........fayehgliseeeyeslkkacekk.eeleqesekcanllekaskvavekenkglnvynileeccklka 258
                    G+lig+g++       +++          f+++hg++s++ y+ + ++c  +  ++   + kc++l++++++     + +g+  y ++ ec     
     KOO24236.1 217 GMLIGDGCTGTDVLCGNAPGhngpwfhmqFFHGHGAVSDKLYDVIVDTCGVEqLKAGIIDPKCESLVKSMDT-----AIGGYFDYAYYDECSP--D 305
                    *********99887766665788999999********************88743444456799999999997.....3568888999999944..2 PP

                    E...........................HHHCTTCCCCTTTTTCHHHHHHHHTSHHHHHHTT--TTSSS--SB-HHHHHHCTCCC-SBCHHHHHHH CS
  Peptidase_S10 259 e...........................lkksstdaqggedpydesyvekylnkkeVrkalhvnasvkkweecndsvfeqleddisksveeileel 327
                    +                           ++     a +++ +   +++ + ln + V+kal+v+ ++  +    + v  ++++ ++k++ ++++++
     KOO24236.1 306 TyispapgfaaqrsrrywssvpplrtapQDGGLGGALNDYPCGGVHAMLTRLNASAVKKALNVP-PDAYFFLTDNGV-GFNYSLTEKNLMPFYQQV 399
                    23456789999999*********9877644444556778888899999999************8.445666666678.78899999********** PP

                    HHTT.-EEEEEEETT CS
  Peptidase_S10 328 lesg.lrvliynGdv 341
                    ++++ +rv++ynGd+
     KOO24236.1 400 VNEKrMRVVVYNGDT 414
                    *9999*********7 PP

  == domain 2  score: 59.1 bits;  conditional E-value: 2.8e-20
                    -STT-HHHHHHHHHHTECTTECCSCCCEEEETTTCESEEEEEEEETT.EEEEEETT--SSHHHHSHHHHHHHHHHHHTT CS
  Peptidase_S10 342 DlicnvlgteawikklelsgkkefrpwevspkkengqvaGyvkeyen.ltfltvkgaGHmvPedkpeealqllerfisg 419
                    D  +n + +++w+ +l+++ ++ +rpw+v   + ++q++Gyv++yen ++flt++gaGHmvPe+kp ++l++l+ f+++
     KOO24236.1 465 DPGINSFVSQNWTVALGFKETQAWRPWTV---DGKQQMGGYVTRYENnFDFLTIRGAGHMVPEFKPTASLAFLTAFLKN 540
                    66789999*********************...79***********777***************************9975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (559 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       273  (0.0152267); expected 358.6 (0.02)
Passed bias filter:                      253  (0.0141112); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.52u 0.27s 00:00:00.79 Elapsed: 00:00:00.43
# Mc/sec: 3866.30
//
Query:       KOO24237.1  [L=729]
Description: peptidyl-prolyl cis-trans cyclophilin-type family expressed [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    5.8e-45  154.0   5.7    5.1e-32  111.5   0.3    2.2  2  RNB            RNB domain
    1.3e-24   87.3   0.0    2.6e-24   86.3   0.0    1.5  1  Pro_isomerase  Cyclophilin type peptidyl-prolyl cis-trans iso
    4.7e-15   56.0   0.1      1e-14   55.0   0.1    1.6  1  PIN_4          PIN domain
    1.1e-14   54.1   0.0    2.6e-14   52.9   0.0    1.6  1  Rrp44_S1       S1 domain
    2.7e-09   36.9   0.0    6.5e-09   35.7   0.0    1.6  1  Rrp44_CSD1     Rrp44-like cold shock domain
    0.00048   19.7   0.0        1.3    8.8   0.0    2.9  3  OB_RNB         Ribonuclease B OB domain
  ------ inclusion threshold ------
       0.16   12.3   0.0        0.4   11.0   0.0    1.6  1  Dis3l2_C_term  DIS3-like exonuclease 2 C terminal


Domain annotation for each model (and alignments):
>> RNB  RNB domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  111.5   0.3     2e-35   5.1e-32      75     215 ..     411     549 ..     410     554 .. 0.96
   2 !   44.8   1.0   3.9e-15     1e-11     289     324 ..     556     591 ..     549     592 .. 0.87

  Alignments for each domain:
  == domain 1  score: 111.5 bits;  conditional E-value: 2e-35
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
         RNB  75 PqelsedlcSLnpgedrlalsvlidvdekgevlsveiylsvIkskarltydevqdlleqkdeke.ekktaedLellyelakalrkkRlkkgalefdspe 172
                 P++l edlcSL+++ drla+sv++ vd++ +v s+++ ++vI+s+a l+y+++q  ++   +++  +  +e+L++l++lakal++kR ++gal++ spe
  KOO24237.1 411 PKRLGEDLCSLHEKVDRLAFSVIWVVDHEANVISTKVAKTVIRSVAALSYEQAQLRMD---DARlVDPLTESLRTLNRLAKALKAKRAASGALSLASPE 506
                 99*******************************************************4...4555889******************************* PP

                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
         RNB 173 ikllldedkgnrielkveeetkahslveelmllANelvArfls 215
                 +++ ld++++ ++++++++ ++a+s+ ee+mllAN + Ar++s
  KOO24237.1 507 VRFVLDSETRDPTDVAMYNLKEANSMAEEFMLLANITQARYFS 549
                 *****************************************96 PP

  == domain 2  score: 44.8 bits;  conditional E-value: 3.9e-15
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
         RNB 289 epvgHfgLaleeYthfTSPirRYpDlvvhrllkall 324
                  +  H+gLa+++YthfTSPirRY+D + hrll a++
  KOO24237.1 556 ADYLHYGLAAPIYTHFTSPIRRYADQMAHRLLAAII 591
                 4456****************************9987 PP

>> Pro_isomerase  Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   86.3   0.0     1e-27   2.6e-24      23     157 ..       7     144 ..       4     145 .. 0.85

  Alignments for each domain:
  == domain 1  score: 86.3 bits;  conditional E-value: 1e-27
  Pro_isomerase  23 ktvenFlklvkegfYdgttFhRvikgfmvqgGdptgkts..ageqekkggesiraipdEitsklkhkrGalamartgkepnsagsqFfItlkeaph 116
                    +tv+ + kl + g Yd  +++Rv kgf++q   + ++    + +qe +++  ++++p+E+ ++++h rG+l+m rt ++pns+gs F + l+ a h
     KOO24237.1   7 VTVAHISKLFRLGCYDTDHIFRVDKGFVAQIQSIYAGAVtkTLSQECSTE-AMKTVPAEF-TSIRHVRGILSMGRT-EDPNSGGSSFSMLLGRAAH 99 
                    5899999***********************66655543321111222222.458******.799************.69***************** PP

  Pro_isomerase 117 ldgkytvFGkVveGmdvvekiekvetde....erpkknvkivsae 157
                    ld++ytvFGkV+eG +v+ ++e+vet +      pk++++i++a+
     KOO24237.1 100 LDNEYTVFGKVMEGDEVLAALEQVETRKegifVMPKQRITITRAT 144
                    ***********************999998999999999***9875 PP

>> PIN_4  PIN domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.0   0.1   3.9e-18     1e-14       1     130 [.     162     287 ..     162     288 .. 0.85

  Alignments for each domain:
  == domain 1  score: 55.0 bits;  conditional E-value: 3.9e-18
       PIN_4   1 fVlDTnvlLhdpealksfkeehdvviPitVleELdklKkgsserelarlarqanrlldellekesgrlkvqtsaeelpeeeseseknDnrIlavalelk 99 
                 +VlDTnv+Lh++++l++    +dv++ +tVl+E+++ K +   ++l++ + + +r ++   ++ + + +v ++  e p+   +  +nD++I  ++ +++
  KOO24237.1 162 YVLDTNVVLHQIDLLERP-ALTDVIVLQTVLDEVRHNKLSVY-KRLRSIIADEQRRFHVFCNEFHRETFVARRPGESPN---D--RNDRAIRVATQWYQ 253
                 8****************9.*********************99.566665555555555555555667777777777776...5..9************* PP

       PIN_4 100 eekp...drkvvLvskDinlrikAkalgieaedy 130
                 ++       +v+L+++D ++r  A+  g+++e++
  KOO24237.1 254 SQLGeeaGVEVLLLTNDAENRRLARDAGLKCESI 287
                 *999777899*********************997 PP

>> Rrp44_S1  S1 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.9   0.0     1e-17   2.6e-14       1      81 [.     641     712 ..     641     718 .. 0.85

  Alignments for each domain:
  == domain 1  score: 52.9 bits;  conditional E-value: 1e-17
                 SEEEEEEEEEESSEEEEEETTTTEEEEEEHHHCBS-GGG..-EEETTTTEEEEBBTTSSS-EEEETTSEEEEEEEEEE-SS CS
    Rrp44_S1   1 veeegyvikvfsNGvvvlvprfGiEglirledlaeeeeskeaefdeeeykleveekkkekkvtvelFdkvkVkvksekdes 81 
                 +ee++yvikv +NGvvvlvpr+GiEg++ +       e+++  +d+++  l  +        t++ Fdkv+V +++ + ++
  KOO24237.1 641 TEEDAYVIKVRENGVVVLVPRYGIEGIVYVAAR---GERSAFAYDAKTDALIAPGC------TLRTFDKVRVAISVDQSRA 712
                 589***************************944...34446899999999987776......899*********9987765 PP

>> Rrp44_CSD1  Rrp44-like cold shock domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.7   0.0   2.5e-12   6.5e-09      14     102 ..     304     387 ..     296     399 .. 0.75

  Alignments for each domain:
  == domain 1  score: 35.7 bits;  conditional E-value: 2.5e-12
                 HHHHHTTSEEEEEEEEESSBTTEEEEE-SSS..SS-EEEESHHHHTS--TT-EEEEEE--GGG-B---.SS-B-CCCSSTT--TT-B--SSS CS
  Rrp44_CSD1  14 mgglkngvlyqgniqiseynflegsvslprf..skpvlivgqknlnrafngdqvivellpqsewkaps.sivldsehfdvndnpdieagddd 102
                   gl  g l+qg+++is +n  +g+v +  +     +l+ g+  lnra++gd v v llp++ew     s + d           + a ddd
  KOO24237.1 304 QAGLTAGELHQGKLNISRHNSRQGAVFVSSLkgHTSILLRGDEALNRAIDGDIVAVRLLPEAEWTDQVdSKLADR--------AALAAADDD 387
                 479*********************987765511578999*************************86431333333........333333333 PP

>> OB_RNB  Ribonuclease B OB domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.4   0.0    0.0014       3.6      30      49 ..     108     127 ..     105     130 .. 0.85
   2 !    8.8   0.0    0.0005       1.3      12      43 ..     330     362 ..     324     374 .. 0.76
   3 ?   -2.2   0.0       1.3   3.3e+03      21      50 ..     686     714 ..     681     720 .. 0.56

  Alignments for each domain:
  == domain 1  score: 7.4 bits;  conditional E-value: 0.0014
                 TTS-TT-EEEEEEEESSSEE CS
      OB_RNB  30 kkamhGDrVlvritkgdrrg 49 
                  k+m GD Vl+ +++++ r+
  KOO24237.1 108 GKVMEGDEVLAALEQVETRK 127
                 68***********9977766 PP

  == domain 2  score: 8.8 bits;  conditional E-value: 0.0005
                 EEEECT.TEEEEE-.HHHHTTS-TT-EEEEEEE CS
      OB_RNB  12 FlipdegkeDifip.peqmkkamhGDrVlvrit 43 
                 F++  +g+++i ++  e +++a++GD+V vr+ 
  KOO24237.1 330 FVSSLKGHTSILLRgDEALNRAIDGDIVAVRLL 362
                 5566666666777524679***********985 PP

  == domain 3  score: -2.2 bits;  conditional E-value: 1.3
                 EEEE-HHHHTTS-TT-EEEEEEEE.SSSEEE CS
      OB_RNB  21 DifippeqmkkamhGDrVlvritk.gdrrgr 50 
                 D  i p  + + +  D+V v i+  ++r  r
  KOO24237.1 686 DALIAPGCTLRTF--DKVRVAISVdQSRAHR 714
                 5555555555555..5666666663355444 PP

>> Dis3l2_C_term  DIS3-like exonuclease 2 C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   0.00016       0.4       4      35 ..     642     673 ..     641     695 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00016
  Dis3l2_C_term   4 eekavVvnVldssfDVlileyGlekRVyldkl 35 
                    ee a V++V ++ + Vl+++yG+e  Vy+ + 
     KOO24237.1 642 EEDAYVIKVRENGVVVLVPRYGIEGIVYVAAR 673
                    689*************************9765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (729 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       454  (0.0253221); expected 358.6 (0.02)
Passed bias filter:                      372  (0.0207485); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.61u 0.28s 00:00:00.89 Elapsed: 00:00:00.45
# Mc/sec: 4836.50
//
Query:       KOO24238.1  [L=212]
Description: hypothetical protein Ctob_001252 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
  ------ inclusion threshold ------
      0.067   13.0   0.0      0.083   12.7   0.0    1.1  1  ATPgrasp_TupA  TupA-like ATPgrasp


Domain annotation for each model (and alignments):
>> ATPgrasp_TupA  TupA-like ATPgrasp
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   4.6e-06     0.083      55     120 ..      39     114 ..      21     131 .. 0.80

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 4.6e-06
  ATPgrasp_TupA  55 ikesiViKpthdsGsrgvlevkneldilkvk..........skllkylerndlkekrekkykdvkpriilEkklkk 120
                     ++  V Kpth s s +v++vkn l+i ++            +++  l+    +    ++ ++v p i++E+ + +
     KOO24238.1  39 VQKDYVAKPTHLSCSDQVYVVKNGLNIYSKLhapvqprlvaANMTMALRTRSSVWGESWALHHVPPGILIEERISA 114
                    56889**********************9987888887776655555566677777777778889999999998765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (212 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       469  (0.0261587); expected 358.6 (0.02)
Passed bias filter:                      383  (0.021362); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.25s 00:00:00.65 Elapsed: 00:00:00.41
# Mc/sec: 1545.93
//
Query:       KOO24239.1  [L=1167]
Description: hypothetical protein Ctob_001253 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    7.2e-09   35.4   0.1    3.7e-08   33.1   0.0    2.2  2  PDZ_6          PDZ domain
    2.3e-07   31.0   0.0    7.1e-07   29.5   0.0    1.8  1  PDZ_2          PDZ domain
    5.1e-05   23.5   0.0    0.00011   22.5   0.0    1.5  1  PDZ            PDZ domain
    0.00057   19.8   0.1        0.3   10.9   0.1    2.6  3  Peptidase_M10  Matrixin
  ------ inclusion threshold ------
      0.048   13.3   0.2      0.091   12.4   0.2    1.4  1  Peptidase_M57  Dual-action HEIGH metallo-peptidase
       0.16   11.2   0.3       0.32   10.1   0.3    1.5  1  DUF4953        Met-zincin
       0.49   10.0   1.6        1.4    8.5   1.6    1.7  1  Astacin        Astacin (Peptidase family M12A)


Domain annotation for each model (and alignments):
>> PDZ_6  PDZ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.0       1.4   3.5e+03      26      43 ..     113     130 ..     113     133 .. 0.87
   2 !   33.1   0.0   1.4e-11   3.7e-08       2      33 ..     902     931 ..     901     950 .. 0.84

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 1.4
       PDZ_6  26 NGqpveglsladvaallr 43 
                 N q++++l+++++++ ++
  KOO24239.1 113 NAQETTFLTCEELRDVIK 130
                 7788999********998 PP

  == domain 2  score: 33.1 bits;  conditional E-value: 1.4e-11
       PDZ_6   2 VtaVdpgsPAdrAGlrvGDiilsvNGqpvegl 33 
                 VtaV+p+sPA +AGl +GD+il+v+++++  +
  KOO24239.1 902 VTAVEPNSPASKAGLHAGDLILAVDDVDC--T 931
                 99*************************98..4 PP

>> PDZ_2  PDZ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.5   0.0   2.8e-10   7.1e-07      17      65 ..     901     948 ..     881     958 .. 0.83

  Alignments for each domain:
  == domain 1  score: 29.5 bits;  conditional E-value: 2.8e-10
                 EEEEE-TTSGGGGT.--TT-EEEEETTB--SSHHHHHHHHHTS-TT-EE CS
       PDZ_2  17 lvvsVkeggPaakaglkagDvilkvdgkkvksledlislllkkkpGdtV 65 
                  v+ V++++Pa+kagl+agD il+vd+++  ++     +l+k  +G+ V
  KOO24239.1 901 KVTAVEPNSPASKAGLHAGDLILAVDDVDC-TEGMAAAKLWKEGAGRAV 948
                 4778*************************9.777777888888888877 PP

>> PDZ  PDZ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.5   0.0   4.3e-08   0.00011      13      59 ..     893     931 ..     881     939 .. 0.79

  Alignments for each domain:
  == domain 1  score: 22.5 bits;  conditional E-value: 4.3e-08
                 SEEEEEETTSSSSSSEEEEEECTTSHHHHHTSSTTEEEEEETTEETT CS
         PDZ  13 GfslkggsdqrgdkgifvsevlpggaaeadglkvGDkIlsvNgvdve 59 
                 G+++ +           v+ v+p+++a ++gl++GD Il+v++vd +
  KOO24239.1 893 GLTVNE--------FNKVTAVEPNSPASKAGLHAGDLILAVDDVDCT 931
                 555554........4569*************************9865 PP

>> Peptidase_M10  Matrixin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.7   0.0    0.0046        12      15      53 ..     117     156 ..     112     162 .. 0.85
   2 !   10.9   0.1   0.00012       0.3     110     129 ..     449     468 ..     423     481 .. 0.90
   3 ?   -3.1   0.0       2.3     6e+03     130     157 ..     503     530 ..     501     530 .. 0.79

  Alignments for each domain:
  == domain 1  score: 5.7 bits;  conditional E-value: 0.0046
                    XTTSXHHHHHHHHHHHHHHHHTTSS.SEEEEESSSCESEE CS
                    xxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxx RF
  Peptidase_M10  15 tpdleeeevrkairrAfkvwsevtp.lkFtevkkgeadik 53 
                    t+ l+ ee r++i+rA+++w+   + + F++v+++ ad++
     KOO24239.1 117 TTFLTCEELRDVIKRALDTWAVNHRtIYFRDVSDQCADVN 156
                    55588899************988755*********99986 PP

  == domain 2  score: 10.9 bits;  conditional E-value: 0.00012
                    HHHHHHHHHHHTTBESXSST CS
                    xxxxxxxxxxxxxxxxxxxx RF
  Peptidase_M10 110 flVaaHEiGHalGLeHssdk 129
                    ++  aHE+GH+lG +H +++
     KOO24239.1 449 ESAIAHEVGHVLGFHHPDVE 468
                    56789***********8776 PP

  == domain 3  score: -3.1 bits;  conditional E-value: 2.3
                    TSTTSSSCTXTTTXSSXHHHHHHHHHHH CS
                    xxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Peptidase_M10 130 dalmyplykeekkvrlskdDvkgiqelY 157
                    +++m++   ++ ++ ls dD +g++ lY
     KOO24239.1 503 ESIMFSRSLHRVRTCLSVDDLEGLNFLY 530
                    5677776666777889********9998 PP

>> Peptidase_M57  Dual-action HEIGH metallo-peptidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.2   3.6e-05     0.091     134     212 .]     449     530 ..     443     530 .. 0.63

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 3.6e-05
  Peptidase_M57 134 ehvithelGhtvGlRhsDyynrs.isCGsagnegtagv..GaihipgtPttatsgsimnsCfsssetGeftssDitaLeylY 212
                    e  i he+Gh++G+ h D  +r  +   +  n +t +     ++++ t     ++sim s          +  D   L++lY
     KOO24239.1 449 ESAIAHEVGHVLGFHHPDVESRHnLKANQRMNATTCSYplDHVRLAATTVEVVTESIMFSRSLHRVRTCLSVDDLEGLNFLY 530
                    7789**************9998613334545555444411445555555555668888776555555555555555555555 PP

>> DUF4953  Met-zincin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.3   0.00013      0.32      15      29 ..     450     464 ..     446     506 .. 0.85

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.00013
     DUF4953  15 fvvaHEvGhtLGLrh 29 
                   +aHEvGh+LG+ h
  KOO24239.1 450 SAIAHEVGHVLGFHH 464
                 679**********88 PP

>> Astacin  Astacin (Peptidase family M12A)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.5   1.6   0.00055       1.4      81      96 ..     450     465 ..     441     475 .. 0.78

  Alignments for each domain:
  == domain 1  score: 8.5 bits;  conditional E-value: 0.00055
                 HHHHHHHHHHHTB--G CS
     Astacin  81 giivHElmHalGffHe 96 
                   i+HE++H+lGf+H 
  KOO24239.1 450 SAIAHEVGHVLGFHHP 465
                 4689***********6 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1167 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       612  (0.0341346); expected 358.6 (0.02)
Passed bias filter:                      475  (0.0264934); expected 358.6 (0.02)
Passed Vit filter:                        52  (0.00290033); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.81u 0.29s 00:00:01.10 Elapsed: 00:00:00.45
# Mc/sec: 7720.73
//
Query:       KOO24240.1  [L=230]
Description: glycosyltransferase family 77 protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    6.4e-10   39.4   0.2      8e-10   39.0   0.2    1.1  1  Nucleotid_trans  Nucleotide-diphospho-sugar transferase


Domain annotation for each model (and alignments):
>> Nucleotid_trans  Nucleotide-diphospho-sugar transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.0   0.2   4.5e-14     8e-10     130     205 ..       2      79 ..       1      86 [. 0.87

  Alignments for each domain:
  == domain 1  score: 39.0 bits;  conditional E-value: 4.5e-14
  Nucleotid_trans 130 kkwaeelasesglwDqdvfnlllregaake...sglkvrvLdtalfvngkgyfvqvrdeeevktkkkpvavhanycsgk 205
                       ++++++++e  +wDq+++n+ +++ a +    +g++vrv+++ + +n+k+ f+ + d+  +  +++pv +h+ny+ +k
       KOO24240.1   2 ARLKRRMETE-DVWDQTAYNEEMWYAALPGvqsHGVSVRVMNYFCNMNSKTLFRFMLDDATLMARHRPVSIHINYHPEK 79 
                      5788999997.88************98777899**********************7777777777***********954 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (230 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       299  (0.0166769); expected 358.6 (0.02)
Passed bias filter:                      281  (0.0156729); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.27s 00:00:00.67 Elapsed: 00:00:00.42
# Mc/sec: 1632.48
//
Query:       KOO24241.1  [L=616]
Description: hypothetical protein Ctob_001261 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.18   11.9   0.2       0.37   10.8   0.2    1.5  1  UPF0370   Uncharacterised protein family (UPF0370)


Domain annotation for each model (and alignments):
>> UPF0370  Uncharacterised protein family (UPF0370)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.2   2.1e-05      0.37       4      31 ..     461     488 ..     458     496 .. 0.85

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 2.1e-05
     UPF0370   4 LadYWWvillllvGillngikeLkrvdh 31 
                 L  Y W+il ++vG++  ++  L ++++
  KOO24241.1 461 LIAYVWIILSIIVGVIAAALGPLVQLEE 488
                 678**************99988888775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (616 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1022  (0.0570026); expected 358.6 (0.02)
Passed bias filter:                      463  (0.0258241); expected 358.6 (0.02)
Passed Vit filter:                        49  (0.002733); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.59u 0.25s 00:00:00.84 Elapsed: 00:00:00.40
# Mc/sec: 4580.58
//
Query:       KOO24242.1  [L=498]
Description: hypothetical protein Ctob_001258 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    7.9e-06   25.8   0.0      0.051   13.3   0.0    2.2  2  DUF3431   Protein of unknown function (DUF3431)


Domain annotation for each model (and alignments):
>> DUF3431  Protein of unknown function (DUF3431)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.3   0.0   2.8e-06     0.051      37      73 ..      50      86 ..      17     106 .. 0.78
   2 !   10.3   0.0   2.4e-05      0.43     153     204 ..     180     229 ..     123     236 .. 0.89

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 2.8e-06
     DUF3431 37 vpankGreamaYltyiidnYdsLpdvvvFvhahraaw 73
                  an Gr  + Ylt+i+ +++sL++ ++Fv+ + +a+
  KOO24242.1 50 RLANVGRCDHSYLTHITRHFSSLAKLTLFVKDTTFAH 86
                34899*************************9888764 PP

  == domain 2  score: 10.3 bits;  conditional E-value: 2.4e-05
     DUF3431 153 aqFavsrerirkrpreeYvrlrqwlletelddelsGrvleylWhilFgkeav 204
                 + Fa s ++ir++p++ Y+r+ q + +    +  +G  +e++W   F++ ++
  KOO24242.1 180 GIFAASAKAIRRTPLAIYERMLQDVGRG--PNVEAGHFMERSWFAAFNGPHQ 229
                 57*******************9999775..56679**********9987654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (498 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       351  (0.0195772); expected 358.6 (0.02)
Passed bias filter:                      292  (0.0162865); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.53u 0.24s 00:00:00.77 Elapsed: 00:00:00.42
# Mc/sec: 3554.23
//
Query:       KOO24243.1  [L=525]
Description: heat domain-containing protein, partial [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    5.4e-64  212.6  84.8    4.1e-13   49.5   4.1    8.0  9  HEAT_2          HEAT repeats
    5.7e-59  191.0  34.0     0.0012   18.9   0.0   14.9 15  HEAT            HEAT repeat
    5.3e-42  141.8  57.5    6.1e-06   26.6   0.8   13.2 14  HEAT_EZ         HEAT-like repeat
    1.3e-21   76.5  67.0     0.0063   16.8   0.2   14.9 15  Cohesin_HEAT    HEAT repeat associated with sister chromatid 
    9.7e-21   74.5  12.6     0.0034   17.4   0.0    8.3 10  Cnd1            non-SMC mitotic condensation complex subunit 
    2.5e-19   69.2  21.1    0.00091   17.9   0.3    5.1  5  Adaptin_N       Adaptin N terminal region
    6.8e-19   67.2  23.0        1.2    9.3   0.0   12.0 13  Arm             Armadillo/beta-catenin-like repeat
    3.1e-09   37.0   0.7       0.17   12.1   0.0    6.5  3  RTP1_C1         Required for nuclear transport of RNA pol II 
    1.4e-08   34.6   8.8        1.7    8.1   0.1    8.0  8  CLASP_N         CLASP N terminal
    3.3e-05   23.2  27.3      0.079   12.1   0.5    8.7  9  IFRD            Interferon-related developmental regulator (I
     0.0015   18.7   0.3    1.2e+02    2.8   0.0    6.9  9  V-ATPase_H_C    V-ATPase subunit H
     0.0025   17.6  21.0         29    4.6   0.0    9.7 11  DUF3263         Protein of unknown function (DUF3263)
  ------ inclusion threshold ------
      0.014   15.6   0.0         24    5.2   0.0    4.4  5  DUF5071         Domain of unknown function (DUF5071)
      0.019   14.5   0.0         94    2.4   0.0    5.5  8  Tti2            Tti2 family
      0.069   12.9   7.0         15    5.2   0.0    4.7  5  DNA_alkylation  DNA alkylation repair enzyme
        1.2    9.5   3.1    2.5e+02    2.1   0.0    5.5  7  RasGEF_N_2      Rapamycin-insensitive companion of mTOR RasGE


Domain annotation for each model (and alignments):
>> HEAT_2  HEAT repeats
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.1   0.1     0.027        30      50      88 .]      42      76 ..      31      76 .. 0.81
   2 !   38.0   5.8   1.5e-12   1.6e-09       8      88 .]      59     144 ..      56     144 .. 0.87
   3 !   32.3   2.8   8.9e-11   9.9e-08       2      61 ..     156     217 ..     155     226 .. 0.86
   4 !   31.6   1.7   1.4e-10   1.6e-07       2      61 ..     224     285 ..     223     290 .. 0.87
   5 !   49.5   4.1   3.6e-16   4.1e-13       2      88 .]     292     382 ..     291     382 .. 0.88
   6 !   41.0   3.4   1.7e-13   1.9e-10       2      88 .]     326     416 ..     325     416 .. 0.83
   7 !   37.1   3.6   2.8e-12   3.1e-09       2      87 ..     360     449 ..     359     449 .. 0.86
   8 !   42.5   3.6   5.8e-14   6.5e-11       5      88 .]     397     484 ..     393     484 .. 0.87
   9 !   38.5   5.1     1e-12   1.1e-09       2      88 .]     428     518 ..     427     518 .. 0.80

  Alignments for each domain:
  == domain 1  score: 5.1 bits;  conditional E-value: 0.027
      HEAT_2 50 aaaeaLgaigdpealpaLkellddddddvvReaAaeaLa 88
                ++++aL+++ d+++   L++    d++++vR aA+++La
  KOO24243.1 42 EVVDALAKFEDSDSGVRLEA----DSVSYVRKAAVSTLA 76
                57888888888888777775....889999999998885 PP

  == domain 2  score: 38.0 bits;  conditional E-value: 1.5e-12
      HEAT_2   8 lendpdpevrraairaLgrignp...ealpaLvellededpavRraaaeaLgaig...dpealpaLkellddddddvvReaAaeaLa 88 
                 le d+  +vr+aa+ +L++++     +  paLv  led+d++vR+aa+ +Lg ++   + + +pa  ++l +d+d+ vR aA+++L+
  KOO24243.1  59 LEADSVSYVRKAAVSTLAKLDAAtlaQHAPALVARLEDSDSDVRMAAVSTLGLLDaatLARHAPAIVARL-EDSDSGVRSAAVSTLG 144
                 7788999***********9887744466************************9974335999*******9.5799999*****9986 PP

  == domain 3  score: 32.3 bits;  conditional E-value: 8.9e-11
      HEAT_2   2 daLlqalendpdpevrraairaLgrignp...ealpaLvellededpavRraaaeaLgaigdp 61 
                 +a l++l +++d +vr aa+ +Lg+++     +  pa++  led+d+ vR+aa+ +Lg ++  
  KOO24243.1 156 PAILARL-KHSDSDVREAAVSTLGQLDAAtlaRHAPAILARLEDSDSGVRKAAVSTLGLLDAA 217
                 6789999.9***************9988744567************************88765 PP

  == domain 4  score: 31.6 bits;  conditional E-value: 1.4e-10
      HEAT_2   2 daLlqalendpdpevrraairaLgrignp...ealpaLvellededpavRraaaeaLgaigdp 61 
                 +a l++l +++d+ vr+aa+ +Lg ++     +  pa++  led++  vR+aa+ +Lg+++  
  KOO24243.1 224 PAILARL-EHSDWGVRAAAVSTLGLLDAAtlaQHAPAILARLEDSEYPVRMAAVSTLGKLDAA 285
                 788999*.9***************7776633477*************************9865 PP

  == domain 5  score: 49.5 bits;  conditional E-value: 3.6e-16
      HEAT_2   2 daLlqalendpdpevrraairaLgrignp...ealpaLvellededpavRraaaeaLgaig...dpealpaLkellddddddvvReaAaeaLa 88 
                 +aL+++l +++d+ vrraa+ +Lg ++     +  pa+v  l+d+d+ vR+aa+ +Lg+++   + + +pa +++l++ +d+ vReaA+++L+
  KOO24243.1 292 PALVARL-EHSDWGVRRAAVSTLGLLDAAtlaQHAPAIVARLKDSDSGVRKAAVSTLGKLDaatLARHAPAILARLKH-SDSGVREAAVSTLG 382
                 79*****.9***************7776633477**************************844348899*******87.77888*****9986 PP

  == domain 6  score: 41.0 bits;  conditional E-value: 1.7e-13
      HEAT_2   2 daLlqalendpdpevrraairaLgrignp...ealpaLvellededpavRraaaeaLgaigd....pealpaLkellddddddvvReaAaeaLa 88 
                 +a +++l +d+d  vr+aa+ +Lg+++     +  pa++  l+++d+ vR+aa+ +Lg+++       al++L++ l   +d+ vR aA+++L+
  KOO24243.1 326 PAIVARL-KDSDSGVRKAAVSTLGKLDAAtlaRHAPAILARLKHSDSGVREAAVSTLGQLDAatlaRHALAILAM-L-KNSDSGVRKAAVSTLG 416
                 6778999.9***************9987744577**************************952232558888886.4.4578889999*99985 PP

  == domain 7  score: 37.1 bits;  conditional E-value: 2.8e-12
      HEAT_2   2 daLlqalendpdpevrraairaLgrignp...ealpaLvellededpavRraaaeaLgaig...dpealpaLkellddddddvvReaAaeaL 87 
                 +a l++l +++d  vr aa+ +Lg+++     +   a++ +l+++d+ vR+aa+ +Lg+++   + + +pa  ++l++ +d+ vReaA+++L
  KOO24243.1 360 PAILARL-KHSDSGVREAAVSTLGQLDAAtlaRHALAILAMLKNSDSGVRKAAVSTLGKLDaatLAQHAPAIVARLKH-SDSGVREAAVSTL 449
                 6789999.9***************999873445588888888******************844348899*******87.67888****9876 PP

  == domain 8  score: 42.5 bits;  conditional E-value: 5.8e-14
      HEAT_2   5 lqalendpdpevrraairaLgrignp...ealpaLvellededpavRraaaeaLgaig...dpealpaLkellddddddvvReaAaeaLa 88 
                 l+ l + +d  vr+aa+ +Lg+++     +  pa+v  l+++d+ vR+aa+ +Lg+++   + + +pa  ++l+ d+d+ vR+aA+++L+
  KOO24243.1 397 LAML-KNSDSGVRKAAVSTLGKLDAAtlaQHAPAIVARLKHSDSGVREAAVSTLGKLDaatLARHAPAIVARLK-DSDSGVRAAAVWTLG 484
                 6667.899*************9887744466**************************84434889********6.689999******996 PP

  == domain 9  score: 38.5 bits;  conditional E-value: 1e-12
      HEAT_2   2 daLlqalendpdpevrraairaLgrignp...ealpaLvellededpavRraaaeaLgaigd....pealpaLkellddddddvvReaAaeaLa 88 
                 +a +++l +++d  vr aa+ +Lg+++     +  pa+v  l+d+d+ vR+aa+++Lg+++     + al++ ++ l +d+d + R+aA+++L+
  KOO24243.1 428 PAIVARL-KHSDSGVREAAVSTLGKLDAAtlaRHAPAIVARLKDSDSGVRAAAVWTLGKLDAatlaQHALAIVAR-L-EDSDVFMRAAAVSTLG 518
                 6778999.9***************9987744577**************************962222335555544.3.5677888999999885 PP

>> HEAT  HEAT repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.0       8.5   9.6e+03      19      27 ..      12      20 ..      11      21 .. 0.85
   2 !    7.7   0.1    0.0042       4.7      10      27 ..      61      78 ..      57      79 .. 0.86
   3 !   16.6   0.1     6e-06    0.0068       3      26 ..      88     111 ..      87     112 .. 0.93
   4 !   13.2   0.0   7.5e-05     0.084       3      26 ..     122     145 ..     121     146 .. 0.93
   5 !   18.9   0.0   1.1e-06    0.0012       3      27 ..     156     180 ..     155     181 .. 0.96
   6 !   14.7   0.0   2.5e-05     0.028       3      26 ..     190     213 ..     189     214 .. 0.93
   7 !   16.6   0.0     6e-06    0.0068       2      26 ..     223     247 ..     222     248 .. 0.93
   8 !   16.0   0.0   9.6e-06     0.011       3      27 ..     258     282 ..     257     283 .. 0.95
   9 !   14.4   0.1   2.9e-05     0.033       3      26 ..     292     315 ..     291     316 .. 0.93
  10 !   15.5   0.0   1.4e-05     0.015       3      27 ..     326     350 ..     325     351 .. 0.94
  11 !   15.8   0.0     1e-05     0.012       3      27 ..     360     384 ..     359     385 .. 0.96
  12 !   11.8   0.0    0.0002      0.23       5      27 ..     396     418 ..     395     419 .. 0.94
  13 !   13.6   0.0   5.5e-05     0.061       3      27 ..     428     452 ..     427     453 .. 0.94
  14 !   16.6   0.0   5.8e-06    0.0065       3      27 ..     462     486 ..     461     487 .. 0.95
  15 !   10.0   0.1   0.00076      0.85       5      27 ..     498     520 ..     496     521 .. 0.90

  Alignments for each domain:
  == domain 1  score: -2.6 bits;  conditional E-value: 8.5
                HHHHHHHHH CS
        HEAT 19 aAakaLgal 27
                a+aka+g++
  KOO24243.1 12 ASAKAFGEF 20
                89*****98 PP

  == domain 2  score: 7.7 bits;  conditional E-value: 0.0042
                T-SSHHHHHHHHHHHHHH CS
        HEAT 10 sDpspeVReaAakaLgal 27
                 D+ + VR+aA+ +L++l
  KOO24243.1 61 ADSVSYVRKAAVSTLAKL 78
                69999**********976 PP

  == domain 3  score: 16.6 bits;  conditional E-value: 6e-06
                 HHHHHHHT-SSHHHHHHHHHHHHH CS
        HEAT   3 PlllkllsDpspeVReaAakaLga 26 
                 P+l+  l+D++++VR+aA+ +Lg 
  KOO24243.1  88 PALVARLEDSDSDVRMAAVSTLGL 111
                 899999****************95 PP

  == domain 4  score: 13.2 bits;  conditional E-value: 7.5e-05
                 HHHHHHHT-SSHHHHHHHHHHHHH CS
        HEAT   3 PlllkllsDpspeVReaAakaLga 26 
                 P+++  l+D+++ VR+aA+ +Lg 
  KOO24243.1 122 PAIVARLEDSDSGVRSAAVSTLGL 145
                 889999****************95 PP

  == domain 5  score: 18.9 bits;  conditional E-value: 1.1e-06
                 HHHHHHHT-SSHHHHHHHHHHHHHH CS
        HEAT   3 PlllkllsDpspeVReaAakaLgal 27 
                 P++l  l++++++VReaA+ +Lg+l
  KOO24243.1 156 PAILARLKHSDSDVREAAVSTLGQL 180
                 899********************98 PP

  == domain 6  score: 14.7 bits;  conditional E-value: 2.5e-05
                 HHHHHHHT-SSHHHHHHHHHHHHH CS
        HEAT   3 PlllkllsDpspeVReaAakaLga 26 
                 P++l  l+D+++ VR+aA+ +Lg 
  KOO24243.1 190 PAILARLEDSDSGVRKAAVSTLGL 213
                 899*******************95 PP

  == domain 7  score: 16.6 bits;  conditional E-value: 6e-06
                 HHHHHHHHT-SSHHHHHHHHHHHHH CS
        HEAT   2 lPlllkllsDpspeVReaAakaLga 26 
                 +P++l  l+++++ VR+aA+ +Lg 
  KOO24243.1 223 VPAILARLEHSDWGVRAAAVSTLGL 247
                 699********************95 PP

  == domain 8  score: 16.0 bits;  conditional E-value: 9.6e-06
                 HHHHHHHT-SSHHHHHHHHHHHHHH CS
        HEAT   3 PlllkllsDpspeVReaAakaLgal 27 
                 P++l  l+D++  VR+aA+ +Lg+l
  KOO24243.1 258 PAILARLEDSEYPVRMAAVSTLGKL 282
                 899********************87 PP

  == domain 9  score: 14.4 bits;  conditional E-value: 2.9e-05
                 HHHHHHHT-SSHHHHHHHHHHHHH CS
        HEAT   3 PlllkllsDpspeVReaAakaLga 26 
                 P+l+  l+++++ VR+aA+ +Lg 
  KOO24243.1 292 PALVARLEHSDWGVRRAAVSTLGL 315
                 899999****************95 PP

  == domain 10  score: 15.5 bits;  conditional E-value: 1.4e-05
                 HHHHHHHT-SSHHHHHHHHHHHHHH CS
        HEAT   3 PlllkllsDpspeVReaAakaLgal 27 
                 P+++  l+D+++ VR+aA+ +Lg+l
  KOO24243.1 326 PAIVARLKDSDSGVRKAAVSTLGKL 350
                 889999*****************87 PP

  == domain 11  score: 15.8 bits;  conditional E-value: 1e-05
                 HHHHHHHT-SSHHHHHHHHHHHHHH CS
        HEAT   3 PlllkllsDpspeVReaAakaLgal 27 
                 P++l  l+++++ VReaA+ +Lg+l
  KOO24243.1 360 PAILARLKHSDSGVREAAVSTLGQL 384
                 8999*******************98 PP

  == domain 12  score: 11.8 bits;  conditional E-value: 0.0002
                 HHHHHT-SSHHHHHHHHHHHHHH CS
        HEAT   5 llkllsDpspeVReaAakaLgal 27 
                 +l +l+ +++ VR+aA+ +Lg+l
  KOO24243.1 396 ILAMLKNSDSGVRKAAVSTLGKL 418
                 899******************87 PP

  == domain 13  score: 13.6 bits;  conditional E-value: 5.5e-05
                 HHHHHHHT-SSHHHHHHHHHHHHHH CS
        HEAT   3 PlllkllsDpspeVReaAakaLgal 27 
                 P+++  l+++++ VReaA+ +Lg+l
  KOO24243.1 428 PAIVARLKHSDSGVREAAVSTLGKL 452
                 889999*****************87 PP

  == domain 14  score: 16.6 bits;  conditional E-value: 5.8e-06
                 HHHHHHHT-SSHHHHHHHHHHHHHH CS
        HEAT   3 PlllkllsDpspeVReaAakaLgal 27 
                 P+++  l+D+++ VR+aA+++Lg+l
  KOO24243.1 462 PAIVARLKDSDSGVRAAAVWTLGKL 486
                 889999*****************87 PP

  == domain 15  score: 10.0 bits;  conditional E-value: 0.00076
                 HHHHHT-SSHHHHHHHHHHHHHH CS
        HEAT   5 llkllsDpspeVReaAakaLgal 27 
                 ++  l+D++ + R+aA+ +Lg+l
  KOO24243.1 498 IVARLEDSDVFMRAAAVSTLGQL 520
                 56779****************98 PP

>> HEAT_EZ  HEAT-like repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.7   0.2     0.039        43       2      43 ..      23      56 ..      22      61 .. 0.86
   2 !   24.8   0.7     2e-08   2.2e-05       3      54 ..      67     111 ..      65     112 .. 0.91
   3 !   10.8   0.2   0.00049      0.55      26      54 ..     121     145 ..     114     146 .. 0.71
   4 !   15.5   0.1   1.7e-05     0.019      31      55 .]     156     180 ..     155     180 .. 0.95
   5 !   24.3   0.5   2.8e-08   3.2e-05       3      54 ..     169     213 ..     168     214 .. 0.95
   6 !   19.2   0.8   1.1e-06    0.0013       3      54 ..     203     247 ..     201     248 .. 0.94
   7 !   26.6   0.8   5.4e-09   6.1e-06       1      55 []     235     282 ..     235     282 .. 0.97
   8 ?   -2.0   0.0       4.8   5.4e+03      31      40 ..     292     301 ..     285     302 .. 0.65
   9 !   22.7   0.8   9.3e-08    0.0001       1      55 []     303     350 ..     303     350 .. 0.92
  10 !   11.5   0.1   0.00029      0.32      31      55 .]     360     384 ..     359     384 .. 0.95
  11 !    9.3   0.1    0.0015       1.6      33      55 .]     396     418 ..     392     418 .. 0.91
  12 !   11.4   0.0   0.00033      0.36      31      55 .]     428     452 ..     422     452 .. 0.94
  13 !   17.9   0.1   2.8e-06    0.0032      31      55 .]     462     486 ..     457     486 .. 0.94
  14 !    8.3   0.3     0.003       3.3      23      55 .]     492     520 ..     487     520 .. 0.79

  Alignments for each domain:
  == domain 1  score: 4.7 bits;  conditional E-value: 0.039
     HEAT_EZ  2 rvRraAawaLGrlaggepellqplvpeilpaLlalLnddsd.e 43
                ++R aA +a+    +  + +l+p+v ++l+ +      dsd  
  KOO24243.1 23 QERKAASAAF----EFPMAALAPEVVDALAKFE-----DSDsG 56
                57999*****....88899**************.....99844 PP

  == domain 2  score: 24.8 bits;  conditional E-value: 2e-08
     HEAT_EZ   3 vRraAawaLGrlaggepellqplvpeilpaLlalLnddsd.eVRaaAagaLgn 54 
                 vR aA+++L+      + +l+++ p++++ L      dsd +VR aA+ +Lg 
  KOO24243.1  67 VRKAAVSTLA---KLDAATLAQHAPALVARLE-----DSDsDVRMAAVSTLGL 111
                 9********8...88899***9***9999999.....9999**********96 PP

  == domain 3  score: 10.8 bits;  conditional E-value: 0.00049
     HEAT_EZ  26 vpeilpaLlalLnddsd.eVRaaAagaLgn 54 
                  p+i++ L      dsd  VR aA+ +Lg 
  KOO24243.1 121 APAIVARLE-----DSDsGVRSAAVSTLGL 145
                 555555555.....5555**********96 PP

  == domain 4  score: 15.5 bits;  conditional E-value: 1.7e-05
     HEAT_EZ  31 paLlalLnddsdeVRaaAagaLgnl 55 
                 pa la+L++++++VR+aA+ +Lg+l
  KOO24243.1 156 PAILARLKHSDSDVREAAVSTLGQL 180
                 7899*******************97 PP

  == domain 5  score: 24.3 bits;  conditional E-value: 2.8e-08
     HEAT_EZ   3 vRraAawaLGrlaggepellqplvpeilpaLlalLnddsd.eVRaaAagaLgn 54 
                 vR+aA+++LG   +  + +l+ + p+il+ L      dsd  VR+aA+ +Lg 
  KOO24243.1 169 VREAAVSTLG---QLDAATLARHAPAILARLE-----DSDsGVRKAAVSTLGL 213
                 9*********...999****************.....9999**********96 PP

  == domain 6  score: 19.2 bits;  conditional E-value: 1.1e-06
     HEAT_EZ   3 vRraAawaLGrlaggepellqplvpeilpaLlalLnddsd.eVRaaAagaLgn 54 
                 vR aA+++LG      + +l+++vp+il+ L       sd  VRaaA+ +Lg 
  KOO24243.1 203 VRKAAVSTLG---LLDAATLAQHVPAILARLE-----HSDwGVRAAAVSTLGL 247
                 9*********...88999**************.....**************96 PP

  == domain 7  score: 26.6 bits;  conditional E-value: 5.4e-09
     HEAT_EZ   1 wrvRraAawaLGrlaggepellqplvpeilpaLlalLnddsd.eVRaaAagaLgnl 55 
                 w vR+aA+++LG      + +l+++ p+il+ L      ds  +VR aA+ +Lg+l
  KOO24243.1 235 WGVRAAAVSTLG---LLDAATLAQHAPAILARLE-----DSEyPVRMAAVSTLGKL 282
                 99**********...88999**************.....***************97 PP

  == domain 8  score: -2.0 bits;  conditional E-value: 4.8
     HEAT_EZ  31 paLlalLndd 40 
                 paL+a+L+++
  KOO24243.1 292 PALVARLEHS 301
                 6677777665 PP

  == domain 9  score: 22.7 bits;  conditional E-value: 9.3e-08
     HEAT_EZ   1 wrvRraAawaLGrlaggepellqplvpeilpaLlalLnddsd.eVRaaAagaLgnl 55 
                 w vRraA+++LG      + +l+++ p+i++ L      dsd  VR+aA+ +Lg+l
  KOO24243.1 303 WGVRRAAVSTLG---LLDAATLAQHAPAIVARLK-----DSDsGVRKAAVSTLGKL 350
                 99**********...88899***99999999999.....8888***********97 PP

  == domain 10  score: 11.5 bits;  conditional E-value: 0.00029
     HEAT_EZ  31 paLlalLnddsdeVRaaAagaLgnl 55 
                 pa la+L+++++ VR+aA+ +Lg+l
  KOO24243.1 360 PAILARLKHSDSGVREAAVSTLGQL 384
                 7899*******************97 PP

  == domain 11  score: 9.3 bits;  conditional E-value: 0.0015
     HEAT_EZ  33 LlalLnddsdeVRaaAagaLgnl 55 
                  la+L+++++ VR+aA+ +Lg+l
  KOO24243.1 396 ILAMLKNSDSGVRKAAVSTLGKL 418
                 579******************97 PP

  == domain 12  score: 11.4 bits;  conditional E-value: 0.00033
     HEAT_EZ  31 paLlalLnddsdeVRaaAagaLgnl 55 
                 pa +a+L+++++ VR+aA+ +Lg+l
  KOO24243.1 428 PAIVARLKHSDSGVREAAVSTLGKL 452
                 8899*******************97 PP

  == domain 13  score: 17.9 bits;  conditional E-value: 2.8e-06
     HEAT_EZ  31 paLlalLnddsdeVRaaAagaLgnl 55 
                 pa +a+L+d+++ VRaaA+++Lg+l
  KOO24243.1 462 PAIVARLKDSDSGVRAAAVWTLGKL 486
                 7899*******************97 PP

  == domain 14  score: 8.3 bits;  conditional E-value: 0.003
     HEAT_EZ  23 qplvpeilpaLlalLnddsd.eVRaaAagaLgnl 55 
                 +++  +i++ L      dsd   RaaA+ +Lg+l
  KOO24243.1 492 AQHALAIVARLE-----DSDvFMRAAAVSTLGQL 520
                 556667777777.....777799*********97 PP

>> Cohesin_HEAT  HEAT repeat associated with sister chromatid cohesion
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.5   0.0      0.04        45      16      35 ..      40      58 ..      39      58 .. 0.95
   2 ?    2.1   0.2      0.23   2.5e+02      29      42 .]      62      75 ..      61      75 .. 0.80
   3 !    8.4   1.3    0.0024       2.7      23      42 .]      90     109 ..      88     109 .. 0.90
   4 !   13.9   0.6   4.4e-05     0.049      22      42 .]     123     143 ..     122     143 .. 0.92
   5 ?    5.5   0.3      0.02        22      22      42 .]     157     177 ..     156     177 .. 0.84
   6 !   16.8   0.2   5.6e-06    0.0063      22      42 .]     191     211 ..     190     211 .. 0.94
   7 ?    3.0   0.0      0.11   1.3e+02      23      42 .]     226     245 ..     224     245 .. 0.78
   8 !    7.1   0.1    0.0061       6.9      22      42 .]     259     279 ..     258     279 .. 0.94
   9 ?    1.0   0.1      0.49   5.5e+02      33      42 .]     304     313 ..     293     313 .. 0.81
  10 !   15.0   0.3     2e-05     0.022      22      42 .]     327     347 ..     326     347 .. 0.92
  11 !    7.4   0.1    0.0049       5.5      22      42 .]     361     381 ..     360     381 .. 0.88
  12 ?    3.4   0.1     0.088        98      30      42 .]     403     415 ..     395     415 .. 0.87
  13 !    6.6   0.1    0.0088       9.8      23      42 .]     430     449 ..     428     449 .. 0.83
  14 !   11.1   0.2   0.00034      0.38      22      39 ..     463     480 ..     462     483 .. 0.90
  15 !   10.8   0.8   0.00043      0.48      22      42 .]     497     517 ..     496     517 .. 0.92

  Alignments for each domain:
  == domain 1  score: 4.5 bits;  conditional E-value: 0.04
                  SHHHHHHHHHHHHSS-HHHH CS
  Cohesin_HEAT 16 apevldtiarrltDsspsVR 35
                  apev d++a+ ++Ds++ VR
    KOO24243.1 40 APEVVDALAK-FEDSDSGVR 58
                  79********.********9 PP

  == domain 2  score: 2.1 bits;  conditional E-value: 0.23
                  SS-HHHHHHHHHHH CS
  Cohesin_HEAT 29 DsspsVRdAaLell 42
                  Ds + VR+Aa+++l
    KOO24243.1 62 DSVSYVRKAAVSTL 75
                  55566*******97 PP

  == domain 3  score: 8.4 bits;  conditional E-value: 0.0024
                   HHHHHHSS-HHHHHHHHHHH CS
  Cohesin_HEAT  23 iarrltDsspsVRdAaLell 42 
                   + +rl+Ds++ VR Aa+++l
    KOO24243.1  90 LVARLEDSDSDVRMAAVSTL 109
                   6689**************97 PP

  == domain 4  score: 13.9 bits;  conditional E-value: 4.4e-05
                   HHHHHHHSS-HHHHHHHHHHH CS
  Cohesin_HEAT  22 tiarrltDsspsVRdAaLell 42 
                   +i +rl+Ds++ VR Aa+++l
    KOO24243.1 123 AIVARLEDSDSGVRSAAVSTL 143
                   6889***************97 PP

  == domain 5  score: 5.5 bits;  conditional E-value: 0.02
                   HHHHHHHSS-HHHHHHHHHHH CS
  Cohesin_HEAT  22 tiarrltDsspsVRdAaLell 42 
                   +i +rl  s++ VR+Aa+++l
    KOO24243.1 157 AILARLKHSDSDVREAAVSTL 177
                   577788889999*******97 PP

  == domain 6  score: 16.8 bits;  conditional E-value: 5.6e-06
                   HHHHHHHSS-HHHHHHHHHHH CS
  Cohesin_HEAT  22 tiarrltDsspsVRdAaLell 42 
                   +i +rl+Ds++ VR+Aa+++l
    KOO24243.1 191 AILARLEDSDSGVRKAAVSTL 211
                   799****************97 PP

  == domain 7  score: 3.0 bits;  conditional E-value: 0.11
                   HHHHHHSS-HHHHHHHHHHH CS
  Cohesin_HEAT  23 iarrltDsspsVRdAaLell 42 
                   i +rl+ s+  VR+Aa+++l
    KOO24243.1 226 ILARLEHSDWGVRAAAVSTL 245
                   66666667778*******97 PP

  == domain 8  score: 7.1 bits;  conditional E-value: 0.0061
                   HHHHHHHSS-HHHHHHHHHHH CS
  Cohesin_HEAT  22 tiarrltDsspsVRdAaLell 42 
                   +i +rl+Ds+  VR Aa+++l
    KOO24243.1 259 AILARLEDSEYPVRMAAVSTL 279
                   799****************97 PP

  == domain 9  score: 1.0 bits;  conditional E-value: 0.49
                   HHHHHHHHHH CS
  Cohesin_HEAT  33 sVRdAaLell 42 
                    VR Aa+++l
    KOO24243.1 304 GVRRAAVSTL 313
                   5*******97 PP

  == domain 10  score: 15.0 bits;  conditional E-value: 2e-05
                   HHHHHHHSS-HHHHHHHHHHH CS
  Cohesin_HEAT  22 tiarrltDsspsVRdAaLell 42 
                   +i +rl Ds++ VR+Aa+++l
    KOO24243.1 327 AIVARLKDSDSGVRKAAVSTL 347
                   6889***************97 PP

  == domain 11  score: 7.4 bits;  conditional E-value: 0.0049
                   HHHHHHHSS-HHHHHHHHHHH CS
  Cohesin_HEAT  22 tiarrltDsspsVRdAaLell 42 
                   +i +rl  s++ VR+Aa+++l
    KOO24243.1 361 AILARLKHSDSGVREAAVSTL 381
                   6788888899*********97 PP

  == domain 12  score: 3.4 bits;  conditional E-value: 0.088
                   S-HHHHHHHHHHH CS
  Cohesin_HEAT  30 sspsVRdAaLell 42 
                   s++ VR+Aa+++l
    KOO24243.1 403 SDSGVRKAAVSTL 415
                   6788*******97 PP

  == domain 13  score: 6.6 bits;  conditional E-value: 0.0088
                   HHHHHHSS-HHHHHHHHHHH CS
  Cohesin_HEAT  23 iarrltDsspsVRdAaLell 42 
                   i +rl  s++ VR+Aa+++l
    KOO24243.1 430 IVARLKHSDSGVREAAVSTL 449
                   56677779999*******97 PP

  == domain 14  score: 11.1 bits;  conditional E-value: 0.00034
                   HHHHHHHSS-HHHHHHHH CS
  Cohesin_HEAT  22 tiarrltDsspsVRdAaL 39 
                   +i +rl Ds++ VR+Aa+
    KOO24243.1 463 AIVARLKDSDSGVRAAAV 480
                   6889*************8 PP

  == domain 15  score: 10.8 bits;  conditional E-value: 0.00043
                   HHHHHHHSS-HHHHHHHHHHH CS
  Cohesin_HEAT  22 tiarrltDsspsVRdAaLell 42 
                   +i +rl+Ds++ +R+Aa+++l
    KOO24243.1 497 AIVARLEDSDVFMRAAAVSTL 517
                   67899**************97 PP

>> Cnd1  non-SMC mitotic condensation complex subunit 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.9   0.5   0.00015      0.17      32      82 ..      62     109 ..      58     115 .. 0.82
   2 !    9.3   0.1   0.00099       1.1       2      83 ..     101     178 ..     101     181 .. 0.64
   3 !   12.6   0.0   9.3e-05       0.1       2      82 ..     135     211 ..     134     212 .. 0.84
   4 !    8.7   0.0    0.0014       1.6       2      48 ..     169     214 ..     168     232 .. 0.82
   5 !   11.3   0.0   0.00024      0.27       2      54 ..     237     288 ..     236     301 .. 0.82
   6 !   17.4   0.0   3.1e-06    0.0034       2      84 ..     305     383 ..     304     392 .. 0.81
   7 !    8.6   0.1    0.0016       1.8       2      50 ..     373     420 ..     352     437 .. 0.60
   8 !    9.4   0.0   0.00089         1       2      82 ..     373     449 ..     372     456 .. 0.71
   9 !    9.2   0.0     0.001       1.1       2      78 ..     407     479 ..     406     481 .. 0.79
  10 !   11.5   0.0    0.0002      0.23       2      79 ..     441     514 ..     440     524 .. 0.71

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 0.00015
        Cnd1  32 DedpyVRktaaivvakLilndmvkekgflselaklleDenprVvanalaal 82 
                 D+ +yVRk a+ ++akL  +++ +       l   leD+++ V+  a++ l
  KOO24243.1  62 DSVSYVRKAAVSTLAKLDAATLAQH---APALVARLEDSDSDVRMAAVSTL 109
                 8899************976666665...55888889999999999888776 PP

  == domain 2  score: 9.3 bits;  conditional E-value: 0.00099
        Cnd1   2 iRalairtlgcirvpnlveylvepLrkrLkDedpyVRktaaivvakLilndmvkekgflselaklleDenprVvanalaalt 83 
                 +R  a+ tlg +   +l     + + +rL+D+d+ VR  a+ ++  L  +++ +   +   ++  l+ +++ V++ a++ l 
  KOO24243.1 101 VRMAAVSTLGLLDAATLAR-HAPAIVARLEDSDSGVRSAAVSTLGLLDAATLAQ---HAPAILARLKHSDSDVREAAVSTLG 178
                 6777788888777766654.4677888888888888888887776554444443...3445566666666667766666664 PP

  == domain 3  score: 12.6 bits;  conditional E-value: 9.3e-05
        Cnd1   2 iRalairtlgcirvpnlveylvepLrkrLkDedpyVRktaaivvakLilndmvkekgflselaklleDenprVvanalaal 82 
                 +R+ a+ tlg +   +l +   + + +rLk +d+ VR+ a+ ++ +L  +++ +       ++  leD+++ V++ a++ l
  KOO24243.1 135 VRSAAVSTLGLLDAATLAQH-APAILARLKHSDSDVREAAVSTLGQLDAATLARHA---PAILARLEDSDSGVRKAAVSTL 211
                 8999******9999988776.6788899*************999999777766655...5888889999999999998776 PP

  == domain 4  score: 8.7 bits;  conditional E-value: 0.0014
        Cnd1   2 iRalairtlgcirvpnlveylvepLrkrLkDedpyVRktaaivvakL 48 
                 +R  a+ tlg +   +l     + + +rL+D+d+ VRk a+ ++  L
  KOO24243.1 169 VREAAVSTLGQLDAATLAR-HAPAILARLEDSDSGVRKAAVSTLGLL 214
                 7889999999999877765.56888899*************988766 PP

  == domain 5  score: 11.3 bits;  conditional E-value: 0.00024
        Cnd1   2 iRalairtlgcirvpnlveylvepLrkrLkDedpyVRktaaivvakLilndmv 54 
                 +Ra a+ tlg +   +l +   + + +rL+D++  VR+ a+ ++ kL  +++ 
  KOO24243.1 237 VRAAAVSTLGLLDAATLAQH-APAILARLEDSEYPVRMAAVSTLGKLDAATLA 288
                 8************9988876.6888899******************9555544 PP

  == domain 6  score: 17.4 bits;  conditional E-value: 3.1e-06
        Cnd1   2 iRalairtlgcirvpnlveylvepLrkrLkDedpyVRktaaivvakLilndmvkekgflselaklleDenprVvanalaalte 84 
                 +R  a+ tlg +   +l +   + + +rLkD+d+ VRk a+ ++ kL  +++ +       ++  l+ +++ V++ a++ l +
  KOO24243.1 305 VRRAAVSTLGLLDAATLAQH-APAIVARLKDSDSGVRKAAVSTLGKLDAATLARHAP---AILARLKHSDSGVREAAVSTLGQ 383
                 89999*****9999888765.68999*********************7777766555...66666777777777777777765 PP

  == domain 7  score: 8.6 bits;  conditional E-value: 0.0016
        Cnd1   2 iRalairtlgcirvpnlveylvepLrkrLkDedpyVRktaaivvakLil 50 
                 +R  a+ tlg +   +l    +  L + Lk +d+ VRk a+ ++ kL  
  KOO24243.1 373 VREAAVSTLGQLDAATLARHALAIL-AMLKNSDSGVRKAAVSTLGKLDA 420
                 5555566666666555555555433.45666666666666666666633 PP

  == domain 8  score: 9.4 bits;  conditional E-value: 0.00089
        Cnd1   2 iRalairtlgcirvpnlveylvepLrkrLkDedpyVRktaaivvakLilndmvkekgflselaklleDenprVvanalaal 82 
                 +R  a+ tlg +   +l    +  L + Lk +d+ VRk a+ ++ kL  +++ +       +   l+ +++ V++ a++ l
  KOO24243.1 373 VREAAVSTLGQLDAATLARHALAIL-AMLKNSDSGVRKAAVSTLGKLDAATLAQHAP---AIVARLKHSDSGVREAAVSTL 449
                 7888888888888888888877654.7899999999999999999996666655444...444455555666666665555 PP

  == domain 9  score: 9.2 bits;  conditional E-value: 0.001
        Cnd1   2 iRalairtlgcirvpnlveylvepLrkrLkDedpyVRktaaivvakLilndmvkekgflselaklleDenprVvana 78 
                 +R  a+ tlg +   +l +   + + +rLk +d+ VR+ a+ ++ kL  +++ +       +   l+D+++ V+a a
  KOO24243.1 407 VRKAAVSTLGKLDAATLAQH-APAIVARLKHSDSGVREAAVSTLGKLDAATLARHAP---AIVARLKDSDSGVRAAA 479
                 78999999999998877765.6899999******************97776666554...66677778888887776 PP

  == domain 10  score: 11.5 bits;  conditional E-value: 0.0002
        Cnd1   2 iRalairtlgcirvpnlveylvepLrkrLkDedpyVRktaaivvakLilndmvkekgflselaklleDenprVvanal 79 
                 +R  a+ tlg +   +l     + + +rLkD+d+ VR  a+ ++ kL  +++ +       +   leD++   +a a+
  KOO24243.1 441 VREAAVSTLGKLDAATLAR-HAPAIVARLKDSDSGVRAAAVWTLGKLDAATLAQH---ALAIVARLEDSDVFMRAAAV 514
                 7888899999888877655.578999********************955444433...33444555555555555555 PP

>> Adaptin_N  Adaptin N terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   2.4   4.6e-06    0.0051      90     179 ..      62     146 ..      59     162 .. 0.79
   2 !   17.7   0.4   9.5e-07    0.0011      88     179 ..     162     248 ..     147     264 .. 0.82
   3 !   17.0   0.1   1.5e-06    0.0017      88     184 ..     264     352 ..     258     367 .. 0.78
   4 !   13.2   0.2   2.1e-05     0.024      88     141 ..     366     418 ..     360     425 .. 0.91
   5 !   17.9   0.3   8.1e-07   0.00091      85     179 ..     431     520 ..     419     524 .. 0.85

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 4.6e-06
                 SSSHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHT-SSHHHHHHHHHHHHHCCCCCHHCCCCCHHHHHHHCTT-SSHHHHHHHHHHHHHH CS
   Adaptin_N  90 dpnqlirglALrvLssirvpelaedlapaikkllkdrspyvrkkAalailklykkdpdllrkqlveeikellsdkdpgvvlaAvalleei 179
                 d+ +++r  A+++L+++  ++la+  apa+ + l+d+++ vr +A+   l l+++    l +  ++ i+  l+d+d gv +aAv++l  +
  KOO24243.1  62 DSVSYVRKAAVSTLAKLDAATLAQH-APALVARLEDSDSDVRMAAVS-TLGLLDAAT--LARH-APAIVARLEDSDSGVRSAAVSTLGLL 146
                 566899***********99999876.7999999*********97765.445554443..3354.8*******************998766 PP

  == domain 2  score: 17.7 bits;  conditional E-value: 9.5e-07
                 CCSSSHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHT-SSHHHHHHHHHHHHHCCCCCHHCCCCCHHHHHHHCTT-SSHHHHHHHHHHHHHH CS
   Adaptin_N  88 lkdpnqlirglALrvLssirvpelaedlapaikkllkdrspyvrkkAalailklykkdpdllrkqlveeikellsdkdpgvvlaAvalleei 179
                 lk++++ +r  A+++L+++  ++la+  apai + l+d+++ vrk+A+ + l l+++   +  +  v+ i   l+ +d gv +aAv++l  +
  KOO24243.1 162 LKHSDSDVREAAVSTLGQLDAATLARH-APAILARLEDSDSGVRKAAVST-LGLLDAATLA--QH-VPAILARLEHSDWGVRAAAVSTLGLL 248
                 99***********************98.799*************977654.4454444433..44.9*******************998766 PP

  == domain 3  score: 17.0 bits;  conditional E-value: 1.5e-06
                 CCSSSHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHT-SSHHHHHHHHHHHHHCCCCCHHCCCCCHHHHHHHCTT-SSHHHHHHHHHHHHHHHCCCC CS
   Adaptin_N  88 lkdpnqlirglALrvLssirvpelaedlapaikkllkdrspyvrkkAalailklykkdpdllrkqlveeikellsdkdpgvvlaAvalleeikkndr 184
                 l+d++  +r+ A+++L+++  ++la+  apa+ + l++++  vr++A+ + l l+++   +  +  ++ i+  l+d+d gv  aAv++l ++   d 
  KOO24243.1 264 LEDSEYPVRMAAVSTLGKLDAATLAQH-APALVARLEHSDWGVRRAAVST-LGLLDAATLA--QH-APAIVARLKDSDSGVRKAAVSTLGKL---DA 352
                 7899999************99999876.7999999*********977655.4555444433..44.8*********************9999...33 PP

  == domain 4  score: 13.2 bits;  conditional E-value: 2.1e-05
                 CCSSSHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHT-SSHHHHHHHHHHHHHC CS
   Adaptin_N  88 lkdpnqlirglALrvLssirvpelaedlapaikkllkdrspyvrkkAalailkl 141
                 lk++++ +r  A+++L+++  ++la+    ai ++lk +++ vrk+A+ ++ kl
  KOO24243.1 366 LKHSDSGVREAAVSTLGQLDAATLARHA-LAILAMLKNSDSGVRKAAVSTLGKL 418
                 89***********************985.6899***************998887 PP

  == domain 5  score: 17.9 bits;  conditional E-value: 8.1e-07
                 HHHCCSSSHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHT-SSHHHHHHHHHHHHHCCCCCHHCCCCCHHHHHHHCTT-SSHHHHHHHHHHHHHH CS
   Adaptin_N  85 qkDlkdpnqlirglALrvLssirvpelaedlapaikkllkdrspyvrkkAalailklykkdpdllrkqlveeikellsdkdpgvvlaAvalleei 179
                    lk++++ +r  A+++L+++  ++la+  apai + lkd+++ vr +A+ ++ kl  ++  +  +  +  i+  l+d+d+   +aAv++l ++
  KOO24243.1 431 VARLKHSDSGVREAAVSTLGKLDAATLARH-APAIVARLKDSDSGVRAAAVWTLGKLDAATLAQ--H--ALAIVARLEDSDVFMRAAAVSTLGQL 520
                 556999999999999999999999999997.799999999999999999999999988776666..4..68999999999999999999998877 PP

>> Arm  Armadillo/beta-catenin-like repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.0       6.5   7.3e+03      28      37 ..      67      76 ..      64      78 .. 0.77
   2 !    7.1   0.1    0.0052       5.8      15      37 ..      88     110 ..      83     112 .. 0.95
   3 ?    4.4   0.0     0.036        41      15      37 ..     122     144 ..     121     146 .. 0.91
   4 !    8.6   0.0    0.0018         2      15      39 ..     156     180 ..     154     180 .. 0.89
   5 ?    4.6   0.0     0.031        35      15      37 ..     190     212 ..     190     214 .. 0.85
   6 ?    0.6   0.2       0.6   6.7e+02      10      37 ..     221     246 ..     216     248 .. 0.86
   7 ?   -2.1   0.0       4.1   4.6e+03      18      38 ..     261     281 ..     258     282 .. 0.74
   8 ?    4.4   0.1     0.037        42      15      37 ..     292     314 ..     287     316 .. 0.94
   9 !    6.9   0.0    0.0059       6.7      15      38 ..     326     349 ..     322     350 .. 0.92
  10 !    8.2   0.0    0.0023       2.5      15      39 ..     360     384 ..     359     384 .. 0.89
  11 !    8.2   0.0    0.0023       2.6      17      38 ..     396     417 ..     395     418 .. 0.89
  12 !    8.9   0.0    0.0014       1.6      15      38 ..     428     451 ..     424     452 .. 0.92
  13 !    9.3   0.0    0.0011       1.2      15      38 ..     462     485 ..     461     486 .. 0.91

  Alignments for each domain:
  == domain 1  score: -2.7 bits;  conditional E-value: 6.5
                HHHHHHHHHH CS
         Arm 28 vqeeAawALs 37
                v+++A+++L+
  KOO24243.1 67 VRKAAVSTLA 76
                7889999986 PP

  == domain 2  score: 7.1 bits;  conditional E-value: 0.0052
                 HHHHHHTTTSSHHHHHHHHHHHH CS
         Arm  15 ppLvrLLssedeevqeeAawALs 37 
                 p+Lv+ L++ d +v+ +A+++L+
  KOO24243.1  88 PALVARLEDSDSDVRMAAVSTLG 110
                 89********************8 PP

  == domain 3  score: 4.4 bits;  conditional E-value: 0.036
                 HHHHHHTTTSSHHHHHHHHHHHH CS
         Arm  15 ppLvrLLssedeevqeeAawALs 37 
                 p+ v+ L++ d +v+ +A+++L+
  KOO24243.1 122 PAIVARLEDSDSGVRSAAVSTLG 144
                 78899999**************8 PP

  == domain 4  score: 8.6 bits;  conditional E-value: 0.0018
                 HHHHHHTTTSSHHHHHHHHHHHHHH CS
         Arm  15 ppLvrLLssedeevqeeAawALsNL 39 
                 p+ ++ L++ d +v+e+A+++L+ L
  KOO24243.1 156 PAILARLKHSDSDVREAAVSTLGQL 180
                 67777899**************976 PP

  == domain 5  score: 4.6 bits;  conditional E-value: 0.031
                 HHHHHHTTTSSHHHHHHHHHHHH CS
         Arm  15 ppLvrLLssedeevqeeAawALs 37 
                 p+ ++ L++ d +v+++A+++L+
  KOO24243.1 190 PAILARLEDSDSGVRKAAVSTLG 212
                 566777899*************8 PP

  == domain 6  score: 0.6 bits;  conditional E-value: 0.6
                 HTTHHHHHHHHTTTSSHHHHHHHHHHHH CS
         Arm  10 eaGavppLvrLLssedeevqeeAawALs 37 
                 ++  vp+ ++ L++ d +v+ +A+++L+
  KOO24243.1 221 QH--VPAILARLEHSDWGVRAAAVSTLG 246
                 56..999999999*************98 PP

  == domain 7  score: -2.1 bits;  conditional E-value: 4.1
                 HHHTTTSSHHHHHHHHHHHHH CS
         Arm  18 vrLLssedeevqeeAawALsN 38 
                 ++ L++    v+ +A+++L+ 
  KOO24243.1 261 LARLEDSEYPVRMAAVSTLGK 281
                 55566777889999****985 PP

  == domain 8  score: 4.4 bits;  conditional E-value: 0.037
                 HHHHHHTTTSSHHHHHHHHHHHH CS
         Arm  15 ppLvrLLssedeevqeeAawALs 37 
                 p+Lv+ L++ d +v+++A+++L+
  KOO24243.1 292 PALVARLEHSDWGVRRAAVSTLG 314
                 89********************8 PP

  == domain 9  score: 6.9 bits;  conditional E-value: 0.0059
                 HHHHHHTTTSSHHHHHHHHHHHHH CS
         Arm  15 ppLvrLLssedeevqeeAawALsN 38 
                 p+ v+ L++ d +v+++A+++L+ 
  KOO24243.1 326 PAIVARLKDSDSGVRKAAVSTLGK 349
                 788999****************85 PP

  == domain 10  score: 8.2 bits;  conditional E-value: 0.0023
                 HHHHHHTTTSSHHHHHHHHHHHHHH CS
         Arm  15 ppLvrLLssedeevqeeAawALsNL 39 
                 p+ ++ L++ d +v+e+A+++L+ L
  KOO24243.1 360 PAILARLKHSDSGVREAAVSTLGQL 384
                 67777899**************976 PP

  == domain 11  score: 8.2 bits;  conditional E-value: 0.0023
                 HHHHTTTSSHHHHHHHHHHHHH CS
         Arm  17 LvrLLssedeevqeeAawALsN 38 
                  +++L++ d +v+++A+++L+ 
  KOO24243.1 396 ILAMLKNSDSGVRKAAVSTLGK 417
                 5789****************85 PP

  == domain 12  score: 8.9 bits;  conditional E-value: 0.0014
                 HHHHHHTTTSSHHHHHHHHHHHHH CS
         Arm  15 ppLvrLLssedeevqeeAawALsN 38 
                 p+ v+ L++ d +v+e+A+++L+ 
  KOO24243.1 428 PAIVARLKHSDSGVREAAVSTLGK 451
                 788999****************85 PP

  == domain 13  score: 9.3 bits;  conditional E-value: 0.0011
                 HHHHHHTTTSSHHHHHHHHHHHHH CS
         Arm  15 ppLvrLLssedeevqeeAawALsN 38 
                 p+ v+ L++ d +v+ +A+w+L+ 
  KOO24243.1 462 PAIVARLKDSDSGVRAAAVWTLGK 485
                 788999****************85 PP

>> RTP1_C1  Required for nuclear transport of RNA pol II C-terminus 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.2   0.0     0.021        24      22      83 ..      66     128 ..      45     146 .. 0.68
   2 ?    4.7   0.0     0.029        32       8      77 ..     128     224 ..     123     246 .. 0.53
   3 !   12.1   0.0   0.00015      0.17       4      83 ..     260     366 ..     257     524 .. 0.90

  Alignments for each domain:
  == domain 1  score: 5.2 bits;  conditional E-value: 0.021
     RTP1_C1  22 lLrkliekkske.avldiekilkllleaLkdedsYvYLnaikgLvaLadvfpeevlklLleey 83 
                   rk + +  ++ +++++ + +  l+  L+d+ds v ++a+++L  L  +  ++  + ++++ 
  KOO24243.1  66 YVRKAAVSTLAKlDAATLAQHAPALVARLEDSDSDVRMAAVSTLGLLDAATLARHAPAIVARL 128
                 444433222222256666777777888899999999999999998887777777777776666 PP

  == domain 2  score: 4.7 bits;  conditional E-value: 0.029
     RTP1_C1   8 lqdpllpvrahglvlLrkliekkske...........................avldiekilkllleaLkdedsYvYLnaikgLvaLadvfpeevlk 77 
                 l+d+   vr+ ++++L  l  +  ++                           +++++ + +  +l  L+d+ds v  +a+++L  L  +  ++ ++
  KOO24243.1 128 LEDSDSGVRSAAVSTLGLLDAATLAQhapailarlkhsdsdvreaavstlgqlDAATLARHAPAILARLEDSDSGVRKAAVSTLGLLDAATLAQHVP 224
                 5555555666665555544333322223333333333333444444444444444455555555566666666666666666666665555555555 PP

  == domain 3  score: 12.1 bits;  conditional E-value: 0.00015
     RTP1_C1   4 alkdlqdpllpvrahglvlLrkliekkske...........................avldiekilkllleaLkdedsYvYLnaikgLvaLadvfpeev 75 
                 +l+ l+d++ pvr  ++++L kl  +  ++                           +++++ + +  ++  Lkd+ds v  +a+++L +L  +  ++ 
  KOO24243.1 260 ILARLEDSEYPVRMAAVSTLGKLDAATLAQhapalvarlehsdwgvrraavstlgllDAATLAQHAPAIVARLKDSDSGVRKAAVSTLGKLDAATLARH 358
                 688999**************9998777766799999999999999999999999999888888889999999999999999999999999988777777 PP

     RTP1_C1  76 lklLleey 83 
                  + +l++ 
  KOO24243.1 359 APAILARL 366
                 77777666 PP

>> CLASP_N  CLASP N terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.1   0.1     0.013        14     169     199 ..      79     108 ..      63     112 .. 0.80
   2 !    6.9   0.0    0.0036       4.1     176     217 ..     119     161 ..     111     173 .. 0.74
   3 ?   -0.7   0.0      0.76   8.5e+02     175     201 ..     152     178 ..     145     184 .. 0.81
   4 ?    4.3   0.0     0.023        25     176     199 ..     187     210 ..     178     245 .. 0.86
   5 ?   -0.4   0.0      0.64   7.1e+02     174     214 ..     253     294 ..     240     302 .. 0.74
   6 !    8.1   0.1    0.0015       1.7     174     218 ..     321     366 ..     306     412 .. 0.82
   7 ?    1.1   0.0      0.21   2.4e+02     174     200 ..     423     449 ..     412     460 .. 0.84
   8 ?    3.9   0.0     0.031        35     175     199 ..     458     482 ..     448     506 .. 0.76

  Alignments for each domain:
  == domain 1  score: 5.1 bits;  conditional E-value: 0.013
     CLASP_N 169 easllldliekslkkgleDanptVRetaRst 199
                 +a + l ++ ++l++ leD+++ VR +a st
  KOO24243.1  79 DAAT-LAQHAPALVARLEDSDSDVRMAAVST 108
                 4444.56899***************998666 PP

  == domain 2  score: 6.9 bits;  conditional E-value: 0.0036
     CLASP_N 176 liekslkkgleDanptVRetaRstfwef.fkvwPsrAksllss 217
                  + +++++ leD++++VR++a st+  + + +  ++A ++l +
  KOO24243.1 119 RHAPAIVARLEDSDSGVRSAAVSTLGLLdAATLAQHAPAILAR 161
                 57899****************9998666445556666666644 PP

  == domain 3  score: -0.7 bits;  conditional E-value: 0.76
     CLASP_N 175 dliekslkkgleDanptVRetaRstfw 201
                  ++ +++ + l+ +++ VRe+a st+ 
  KOO24243.1 152 AQHAPAILARLKHSDSDVREAAVSTLG 178
                 5678899999999*******9988875 PP

  == domain 4  score: 4.3 bits;  conditional E-value: 0.023
     CLASP_N 176 liekslkkgleDanptVRetaRst 199
                  + +++ + leD++++VR++a st
  KOO24243.1 187 RHAPAILARLEDSDSGVRKAAVST 210
                 567899999**********99777 PP

  == domain 5  score: -0.4 bits;  conditional E-value: 0.64
     CLASP_N 174 ldliekslkkgleDanptVRetaRstfwef.fkvwPsrAksl 214
                 l ++ +++ + leD++  VR +a st+ ++ + +  ++A +l
  KOO24243.1 253 LAQHAPAILARLEDSEYPVRMAAVSTLGKLdAATLAQHAPAL 294
                 45788999999**********999998777434445555555 PP

  == domain 6  score: 8.1 bits;  conditional E-value: 0.0015
     CLASP_N 174 ldliekslkkgleDanptVRetaRstfwef.fkvwPsrAksllssl 218
                 l ++ +++++ l+D++++VR++a st+ ++ + +   +A ++l +l
  KOO24243.1 321 LAQHAPAIVARLKDSDSGVRKAAVSTLGKLdAATLARHAPAILARL 366
                 5678899****************99998885445555666666444 PP

  == domain 7  score: 1.1 bits;  conditional E-value: 0.21
     CLASP_N 174 ldliekslkkgleDanptVRetaRstf 200
                 l ++ +++++ l+ ++++VRe+a st+
  KOO24243.1 423 LAQHAPAIVARLKHSDSGVREAAVSTL 449
                 4578999***************98886 PP

  == domain 8  score: 3.9 bits;  conditional E-value: 0.031
     CLASP_N 175 dliekslkkgleDanptVRetaRst 199
                   + +++++ l+D++++VR +a  t
  KOO24243.1 458 ARHAPAIVARLKDSDSGVRAAAVWT 482
                 467899*************998555 PP

>> IFRD  Interferon-related developmental regulator (IFRD)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.1   0.5     7e-05     0.079     220     249 ..      80     112 ..      64     121 .. 0.79
   2 ?    4.2   0.1     0.018        20     223     249 ..     120     146 ..     112     150 .. 0.87
   3 ?    4.0   0.3     0.021        23     221     249 ..     186     214 ..     147     215 .. 0.78
   4 ?    4.2   0.1     0.017        20     222     249 ..     221     248 ..     215     252 .. 0.87
   5 !    6.5   0.2    0.0035       3.9     220     249 ..     287     316 ..     248     319 .. 0.84
   6 ?   -0.1   0.0      0.36     4e+02     223     247 ..     324     348 ..     317     351 .. 0.82
   7 ?    2.2   0.6      0.07        78     177     247 ..     369     450 ..     361     453 .. 0.59
   8 ?    1.1   0.4      0.15   1.7e+02     224     246 ..     427     449 ..     390     487 .. 0.62
   9 ?   -1.9   0.0       1.3   1.4e+03     224     247 ..     495     518 ..     481     520 .. 0.77

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 7e-05
        IFRD 220 l...eealealvelLdssdvevriAAGeaiALl 249
                      + ++alv+ L++sd +vr+AA  +++Ll
  KOO24243.1  80 AatlAQHAPALVARLEDSDSDVRMAAVSTLGLL 112
                 22344459***********************98 PP

  == domain 2  score: 4.2 bits;  conditional E-value: 0.018
        IFRD 223 alealvelLdssdvevriAAGeaiALl 249
                  ++a v+ L++sd  vr AA  +++Ll
  KOO24243.1 120 HAPAIVARLEDSDSGVRSAAVSTLGLL 146
                 47999********************98 PP

  == domain 3  score: 4.0 bits;  conditional E-value: 0.021
        IFRD 221 eealealvelLdssdvevriAAGeaiALl 249
                  + ++a  + L++sd  vr AA  +++Ll
  KOO24243.1 186 ARHAPAILARLEDSDSGVRKAAVSTLGLL 214
                 34488999999999999999999999997 PP

  == domain 4  score: 4.2 bits;  conditional E-value: 0.017
        IFRD 222 ealealvelLdssdvevriAAGeaiALl 249
                 + ++a  + L++sd  vr AA  +++Ll
  KOO24243.1 221 QHVPAILARLEHSDWGVRAAAVSTLGLL 248
                 349999********************98 PP

  == domain 5  score: 6.5 bits;  conditional E-value: 0.0035
        IFRD 220 leealealvelLdssdvevriAAGeaiALl 249
                 l + ++alv+ L++sd  vr AA  +++Ll
  KOO24243.1 287 LAQHAPALVARLEHSDWGVRRAAVSTLGLL 316
                 23449***********************98 PP

  == domain 6  score: -0.1 bits;  conditional E-value: 0.36
        IFRD 223 alealvelLdssdvevriAAGeaiA 247
                  ++a v+ L++sd  vr AA  +++
  KOO24243.1 324 HAPAIVARLKDSDSGVRKAAVSTLG 348
                 489999**************88875 PP

  == domain 7  score: 2.2 bits;  conditional E-value: 0.07
        IFRD 177 sdgqsieaadsas.ka.lvtaalsawglLltllpssklnkkleedl.........eealealvelLdssdvevriAAGeaiA 247
                 sd +  eaa+s+  +    t a  a+++L+ l +s +  +k+  ++          + ++a v+ L++sd  vr AA  +++
  KOO24243.1 369 SDSGVREAAVSTLgQLdAATLARHALAILAMLKNSDSGVRKAAVSTlgkldaatlAQHAPAIVARLKHSDSGVREAAVSTLG 450
                 5555555555555332566666677777776663333222222222355566666455899999999999999999987775 PP

  == domain 8  score: 1.1 bits;  conditional E-value: 0.15
        IFRD 224 lealvelLdssdvevriAAGeai 246
                 ++a v+ L++sd  vr AA  ++
  KOO24243.1 427 APAIVARLKHSDSGVREAAVSTL 449
                 55555555555555555555444 PP

  == domain 9  score: -1.9 bits;  conditional E-value: 1.3
        IFRD 224 lealvelLdssdvevriAAGeaiA 247
                 + a v+ L++sdv +r AA  +++
  KOO24243.1 495 ALAIVARLEDSDVFMRAAAVSTLG 518
                 557789999999999999988875 PP

>> V-ATPase_H_C  V-ATPase subunit H
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   0.0       1.2   1.4e+03      90     109 ..      90     109 ..      62     115 .. 0.82
   2 ?    2.8   0.0      0.11   1.2e+02      89     111 ..     157     179 ..     147     183 .. 0.86
   3 ?   -2.0   0.0       3.3   3.7e+03      90     109 ..     192     211 ..     187     214 .. 0.85
   4 ?   -3.0   0.0       6.8   7.6e+03      90     109 ..     226     245 ..     221     248 .. 0.84
   5 ?   -0.8   0.0       1.4   1.5e+03      89     112 ..     327     350 ..     316     355 .. 0.85
   6 ?    0.6   0.0      0.53   5.9e+02      89     111 ..     361     383 ..     342     389 .. 0.87
   7 ?    2.3   0.0      0.15   1.7e+02      89     112 ..     395     418 ..     385     422 .. 0.88
   8 ?    0.7   0.0      0.47   5.3e+02      89     112 ..     429     452 ..     419     456 .. 0.86
   9 ?   -3.5   0.0       9.5   1.1e+04      90     111 ..     464     485 ..     460     486 .. 0.81

  Alignments for each domain:
  == domain 1  score: -0.6 bits;  conditional E-value: 1.2
  V-ATPase_H_C  90 imellehedeevkyeALkav 109
                   +++ le++d++v++ A  ++
    KOO24243.1  90 LVARLEDSDSDVRMAAVSTL 109
                   56678899999999999887 PP

  == domain 2  score: 2.8 bits;  conditional E-value: 0.11
  V-ATPase_H_C  89 kimellehedeevkyeALkavqk 111
                    i++ l+h+d++v+  A  ++ +
    KOO24243.1 157 AILARLKHSDSDVREAAVSTLGQ 179
                   688999***********999865 PP

  == domain 3  score: -2.0 bits;  conditional E-value: 3.3
  V-ATPase_H_C  90 imellehedeevkyeALkav 109
                   i++ le++d+ v++ A  ++
    KOO24243.1 192 ILARLEDSDSGVRKAAVSTL 211
                   7888999*********9987 PP

  == domain 4  score: -3.0 bits;  conditional E-value: 6.8
  V-ATPase_H_C  90 imellehedeevkyeALkav 109
                   i++ leh+d  v+  A  ++
    KOO24243.1 226 ILARLEHSDWGVRAAAVSTL 245
                   788899*******9999887 PP

  == domain 5  score: -0.8 bits;  conditional E-value: 1.4
  V-ATPase_H_C  89 kimellehedeevkyeALkavqkl 112
                    i++ l+++d+ v++ A  ++ kl
    KOO24243.1 327 AIVARLKDSDSGVRKAAVSTLGKL 350
                   678889999********9998775 PP

  == domain 6  score: 0.6 bits;  conditional E-value: 0.53
  V-ATPase_H_C  89 kimellehedeevkyeALkavqk 111
                    i++ l+h+d+ v+  A  ++ +
    KOO24243.1 361 AILARLKHSDSGVREAAVSTLGQ 383
                   688999***********999876 PP

  == domain 7  score: 2.3 bits;  conditional E-value: 0.15
  V-ATPase_H_C  89 kimellehedeevkyeALkavqkl 112
                    i+++l+++d+ v++ A  ++ kl
    KOO24243.1 395 AILAMLKNSDSGVRKAAVSTLGKL 418
                   7999**************999875 PP

  == domain 8  score: 0.7 bits;  conditional E-value: 0.47
  V-ATPase_H_C  89 kimellehedeevkyeALkavqkl 112
                    i++ l+h+d+ v+  A  ++ kl
    KOO24243.1 429 AIVARLKHSDSGVREAAVSTLGKL 452
                   688899************999875 PP

  == domain 9  score: -3.5 bits;  conditional E-value: 9.5
  V-ATPase_H_C  90 imellehedeevkyeALkavqk 111
                   i++ l+++d+ v+  A  ++ k
    KOO24243.1 464 IVARLKDSDSGVRAAAVWTLGK 485
                   6777899999999999988766 PP

>> DUF3263  Protein of unknown function (DUF3263)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.1   0.1     0.077        86      46      63 ..      78      95 ..      59     102 .. 0.84
   2 ?    3.0   0.0     0.082        92      45      63 ..     111     129 ..     106     136 .. 0.91
   3 ?    2.1   0.0      0.15   1.7e+02      45      64 ..     145     164 ..     141     173 .. 0.87
   4 ?   -2.2   0.0       3.4   3.9e+03      47      63 ..     181     197 ..     177     199 .. 0.80
   5 ?   -0.8   0.0       1.2   1.4e+03      45      63 ..     213     231 ..     209     233 .. 0.89
   6 ?    0.3   0.0      0.55   6.2e+02      45      63 ..     247     265 ..     243     267 .. 0.90
   7 ?    2.9   0.0     0.088        99      46      63 ..     282     299 ..     275     308 .. 0.85
   8 ?    4.6   0.0     0.026        29      45      63 ..     315     333 ..     310     342 .. 0.89
   9 ?   -0.6   0.0       1.1   1.2e+03      47      64 ..     351     368 ..     346     376 .. 0.82
  10 ?    3.0   0.0     0.081        90      46      64 ..     418     436 ..     412     445 .. 0.83
  11 ?    2.0   0.0      0.17   1.9e+02      47      63 ..     453     469 ..     446     477 .. 0.84

  Alignments for each domain:
  == domain 1  score: 3.1 bits;  conditional E-value: 0.077
     DUF3263 46 iddpeAlaadPvlvkRLr 63
                +d  + ++++P lv RL 
  KOO24243.1 78 LDAATLAQHAPALVARLE 95
                56667789********96 PP

  == domain 2  score: 3.0 bits;  conditional E-value: 0.082
     DUF3263  45 LiddpeAlaadPvlvkRLr 63 
                 L+d  + ++++P +v RL 
  KOO24243.1 111 LLDAATLARHAPAIVARLE 129
                 89999999*********96 PP

  == domain 3  score: 2.1 bits;  conditional E-value: 0.15
     DUF3263  45 LiddpeAlaadPvlvkRLrr 64 
                 L+d  + ++++P +  RL+ 
  KOO24243.1 145 LLDAATLAQHAPAILARLKH 164
                 89999999**********96 PP

  == domain 4  score: -2.2 bits;  conditional E-value: 3.4
     DUF3263  47 ddpeAlaadPvlvkRLr 63 
                 d  + ++++P +  RL 
  KOO24243.1 181 DAATLARHAPAILARLE 197
                 666677899***99995 PP

  == domain 5  score: -0.8 bits;  conditional E-value: 1.2
     DUF3263  45 LiddpeAlaadPvlvkRLr 63 
                 L+d  + +++ P +  RL 
  KOO24243.1 213 LLDAATLAQHVPAILARLE 231
                 89999999*********96 PP

  == domain 6  score: 0.3 bits;  conditional E-value: 0.55
     DUF3263  45 LiddpeAlaadPvlvkRLr 63 
                 L+d  + ++++P +  RL 
  KOO24243.1 247 LLDAATLAQHAPAILARLE 265
                 89999999*********95 PP

  == domain 7  score: 2.9 bits;  conditional E-value: 0.088
     DUF3263  46 iddpeAlaadPvlvkRLr 63 
                 +d  + ++++P lv RL 
  KOO24243.1 282 LDAATLAQHAPALVARLE 299
                 56777789********96 PP

  == domain 8  score: 4.6 bits;  conditional E-value: 0.026
     DUF3263  45 LiddpeAlaadPvlvkRLr 63 
                 L+d  + ++++P +v RL+
  KOO24243.1 315 LLDAATLAQHAPAIVARLK 333
                 8999999***********8 PP

  == domain 9  score: -0.6 bits;  conditional E-value: 1.1
     DUF3263  47 ddpeAlaadPvlvkRLrr 64 
                 d  + ++++P +  RL+ 
  KOO24243.1 351 DAATLARHAPAILARLKH 368
                 66667899********86 PP

  == domain 10  score: 3.0 bits;  conditional E-value: 0.081
     DUF3263  46 iddpeAlaadPvlvkRLrr 64 
                 +d  + ++++P +v RL+ 
  KOO24243.1 418 LDAATLAQHAPAIVARLKH 436
                 56777789*********86 PP

  == domain 11  score: 2.0 bits;  conditional E-value: 0.17
     DUF3263  47 ddpeAlaadPvlvkRLr 63 
                 d  + ++++P +v RL+
  KOO24243.1 453 DAATLARHAPAIVARLK 469
                 6667789*********8 PP

>> DUF5071  Domain of unknown function (DUF5071)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.9   0.0      0.47   5.3e+02      10      47 ..      70     107 ..      68     144 .. 0.78
   2 ?    2.0   0.0      0.22   2.4e+02      10      65 ..     172     228 ..     166     238 .. 0.79
   3 ?    5.2   0.0     0.022        24      10      52 ..     240     282 ..     237     304 .. 0.84
   4 ?    1.4   0.0      0.32   3.6e+02      10      59 ..     274     324 ..     273     349 .. 0.75
   5 ?   -0.7   0.0       1.4   1.6e+03      11      70 ..     343     406 ..     335     443 .. 0.68

  Alignments for each domain:
  == domain 1  score: 0.9 bits;  conditional E-value: 0.47
                 TTHHHHTT--HHHHGGGHHHHHGGGS-TTSTTHHHHHH CS
     DUF5071  10 kavrkLkelvaeelkplvpeLLeWlqDlNwPiaspiae 47 
                 +av +L++l+a  l +++p L   l D    + +  ++
  KOO24243.1  70 AAVSTLAKLDAATLAQHAPALVARLEDSDSDVRMAAVS 107
                 58999****************99999987666665555 PP

  == domain 2  score: 2.0 bits;  conditional E-value: 0.22
                 TTHHHHTT--HHHHGGGHHHHHGGGS-TTSTTHHHHHHHHHHT.GGGTHHHHHHHHH CS
     DUF5071  10 kavrkLkelvaeelkplvpeLLeWlqDlNwPiaspiaelLarf.peelvkeiaeiLe 65 
                 +av +L +l+a  l  ++p +L  l D    + +  ++ L    + +l++++ +iL 
  KOO24243.1 172 AAVSTLGQLDAATLARHAPAILARLEDSDSGVRKAAVSTLGLLdAATLAQHVPAILA 228
                 689999999999999999999999999999988888888876656777788888873 PP

  == domain 3  score: 5.2 bits;  conditional E-value: 0.022
                 TTHHHHTT--HHHHGGGHHHHHGGGS-TTSTTHHHHHHHHHHT CS
     DUF5071  10 kavrkLkelvaeelkplvpeLLeWlqDlNwPiaspiaelLarf 52 
                 +av +L  l+a  l +++p +L  l D  +P+ +  ++ L + 
  KOO24243.1 240 AAVSTLGLLDAATLAQHAPAILARLEDSEYPVRMAAVSTLGKL 282
                 588999999************************9999888665 PP

  == domain 4  score: 1.4 bits;  conditional E-value: 0.32
                 TTHHHHTT--HHHHGGGHHHHHGGGS-TTSTTHHHHHHHHHHT.GGGTHHH CS
     DUF5071  10 kavrkLkelvaeelkplvpeLLeWlqDlNwPiaspiaelLarf.peelvke 59 
                 +av +L +l+a  l +++p L   l    w + +  ++ L    + +l+++
  KOO24243.1 274 AAVSTLGKLDAATLAQHAPALVARLEHSDWGVRRAAVSTLGLLdAATLAQH 324
                 68999******************9999999999888877754434444444 PP

  == domain 5  score: -0.7 bits;  conditional E-value: 1.4
                 THHHHTT--HHHHGGGHHHHHGGGS-TTSTTHHHHHHHHHHT.GGGTHHHHHHHH...HSS-HH CS
     DUF5071  11 avrkLkelvaeelkplvpeLLeWlqDlNwPiaspiaelLarf.peelvkeiaeiL...eknDee 70 
                 av +L +l+a  l  ++p +L  l+     + +  ++ L +  + +l++++ +iL   ++ D  
  KOO24243.1 343 AVSTLGKLDAATLARHAPAILARLKHSDSGVREAAVSTLGQLdAATLARHALAILamlKNSDSG 406
                 6777888888888888888887777777777777666666664555666666664444555554 PP

>> Tti2  Tti2 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.0      0.76   8.5e+02     121     149 ..      83     111 ..      69     120 .. 0.83
   2 ?   -0.3   0.0      0.56   6.3e+02     122     150 ..     118     146 ..     105     162 .. 0.85
   3 ?    1.3   0.0      0.18   2.1e+02     120     149 ..     184     213 ..     171     219 .. 0.84
   4 ?    0.4   0.0      0.33   3.7e+02     122     149 ..     220     247 ..     214     256 .. 0.87
   5 ?    2.4   0.0     0.084        94     125     150 ..     257     282 ..     248     296 .. 0.88
   6 ?   -2.0   0.0       1.9   2.1e+03     120     150 ..     354     384 ..     339     403 .. 0.81
   7 ?   -3.6   0.0       5.5   6.2e+03     127     150 ..     395     418 ..     368     420 .. 0.82
   8 ?   -1.4   0.0       1.2   1.3e+03     125     150 ..     461     486 ..     439     520 .. 0.63

  Alignments for each domain:
  == domain 1  score: -0.7 bits;  conditional E-value: 0.76
        Tti2 121 wplivPpiLnllDdtdtsvKlrGlklLqt 149
                 +    P++++ l+d+d  v+  +++ L  
  KOO24243.1  83 LAQHAPALVARLEDSDSDVRMAAVSTLGL 111
                 556679*****************999875 PP

  == domain 2  score: -0.3 bits;  conditional E-value: 0.56
        Tti2 122 plivPpiLnllDdtdtsvKlrGlklLqtl 150
                  +  P+i++ l+d+d  v+  +++ L  l
  KOO24243.1 118 ARHAPAIVARLEDSDSGVRSAAVSTLGLL 146
                 5567******************9999765 PP

  == domain 3  score: 1.3 bits;  conditional E-value: 0.18
        Tti2 120 nwplivPpiLnllDdtdtsvKlrGlklLqt 149
                  + +  P+iL+ l+d+d  v+  +++ L  
  KOO24243.1 184 TLARHAPAILARLEDSDSGVRKAAVSTLGL 213
                 566778****************99998865 PP

  == domain 4  score: 0.4 bits;  conditional E-value: 0.33
        Tti2 122 plivPpiLnllDdtdtsvKlrGlklLqt 149
                    vP+iL+ l+ +d  v++ +++ L  
  KOO24243.1 220 AQHVPAILARLEHSDWGVRAAAVSTLGL 247
                 5679*******************99975 PP

  == domain 5  score: 2.4 bits;  conditional E-value: 0.084
        Tti2 125 vPpiLnllDdtdtsvKlrGlklLqtl 150
                  P+iL+ l+d++ +v+  +++ L +l
  KOO24243.1 257 APAILARLEDSEYPVRMAAVSTLGKL 282
                 7********************99987 PP

  == domain 6  score: -2.0 bits;  conditional E-value: 1.9
        Tti2 120 nwplivPpiLnllDdtdtsvKlrGlklLqtl 150
                  + +  P+iL+ l  +d  v++ +++ L +l
  KOO24243.1 354 TLARHAPAILARLKHSDSGVREAAVSTLGQL 384
                 5666789999999999999999999999887 PP

  == domain 7  score: -3.6 bits;  conditional E-value: 5.5
        Tti2 127 piLnllDdtdtsvKlrGlklLqtl 150
                 +iL++l ++d  v+  +++ L +l
  KOO24243.1 395 AILAMLKNSDSGVRKAAVSTLGKL 418
                 799999999999999999888765 PP

  == domain 8  score: -1.4 bits;  conditional E-value: 1.2
        Tti2 125 vPpiLnllDdtdtsvKlrGlklLqtl 150
                  P+i++ l d+d  v++ ++  L +l
  KOO24243.1 461 APAIVARLKDSDSGVRAAAVWTLGKL 486
                 56666666666666666666666555 PP

>> DNA_alkylation  DNA alkylation repair enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.6   0.0      0.34   3.8e+02     137     175 ..     101     139 ..      72     144 .. 0.83
   2 ?   -1.2   0.0       1.3   1.4e+03     138     176 ..     170     208 ..     145     215 .. 0.81
   3 ?    4.9   0.0     0.017        19     132     179 ..     232     279 ..     221     296 .. 0.89
   4 ?    5.2   0.0     0.014        15     132     179 ..     300     347 ..     286     381 .. 0.87
   5 ?    0.3   0.1      0.42   4.7e+02     140     181 ..     444     485 ..     421     517 .. 0.64

  Alignments for each domain:
  == domain 1  score: 0.6 bits;  conditional E-value: 0.34
  DNA_alkylation 137 rRaAivatlklikktdlellleiaeelladkedfiqkAi 175
                      R+A+v+tl l  ++ l++    + + l+d++  ++ A 
      KOO24243.1 101 VRMAAVSTLGLLDAATLARHAPAIVARLEDSDSGVRSAA 139
                     599***************999999999999999999886 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 1.3
  DNA_alkylation 138 RaAivatlklikktdlellleiaeelladkedfiqkAiG 176
                     R A+v+tl    ++ l++    + + l+d++  ++kA  
      KOO24243.1 170 REAAVSTLGQLDAATLARHAPAILARLEDSDSGVRKAAV 208
                     668889999999999999999999999999999999975 PP

  == domain 3  score: 4.9 bits;  conditional E-value: 0.017
  DNA_alkylation 132 enlWerRaAivatlklikktdlellleiaeelladkedfiqkAiGwaL 179
                      ++W  RaA+v+tl l  ++ l++    + + l+d+e  ++ A   +L
      KOO24243.1 232 HSDWGVRAAAVSTLGLLDAATLAQHAPAILARLEDSEYPVRMAAVSTL 279
                     568**********************************99998876655 PP

  == domain 4  score: 5.2 bits;  conditional E-value: 0.014
  DNA_alkylation 132 enlWerRaAivatlklikktdlellleiaeelladkedfiqkAiGwaL 179
                      ++W  R A+v+tl l  ++ l++    + + l+d++  ++kA   +L
      KOO24243.1 300 HSDWGVRRAAVSTLGLLDAATLAQHAPAIVARLKDSDSGVRKAAVSTL 347
                     46799999***********************************87777 PP

  == domain 5  score: 0.3 bits;  conditional E-value: 0.42
  DNA_alkylation 140 AivatlklikktdlellleiaeelladkedfiqkAiGwaLre 181
                     A+v+tl    ++ l++    + + l+d++  ++ A  w+L +
      KOO24243.1 444 AAVSTLGKLDAATLARHAPAIVARLKDSDSGVRAAAVWTLGK 485
                     555666666666666666666666666666666666666643 PP

>> RasGEF_N_2  Rapamycin-insensitive companion of mTOR RasGEF_N domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.1   0.0      0.22   2.5e+02       9      29 ..      89     109 ..      86     118 .. 0.90
   2 ?   -0.9   0.0       1.9   2.1e+03      10      29 ..     124     143 ..     121     150 .. 0.89
   3 ?   -1.1   0.0       2.3   2.6e+03      10      31 ..     158     179 ..     152     187 .. 0.86
   4 ?   -1.4   0.0       2.8   3.1e+03      10      29 ..     192     211 ..     189     230 .. 0.87
   5 ?    0.4   0.0      0.77   8.7e+02      10      31 ..     328     349 ..     325     395 .. 0.81
   6 ?   -2.0   0.0       4.2   4.7e+03      12      32 ..     364     384 ..     359     419 .. 0.60
   7 ?   -1.2   0.0       2.3   2.6e+03      10      31 ..     464     485 ..     461     518 .. 0.74

  Alignments for each domain:
  == domain 1  score: 2.1 bits;  conditional E-value: 0.22
  RasGEF_N_2   9 llvnqLydqsrevvaaaleiL 29 
                  lv +L+d++++v++aa++ L
  KOO24243.1  89 ALVARLEDSDSDVRMAAVSTL 109
                 5899*************9987 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 1.9
  RasGEF_N_2  10 lvnqLydqsrevvaaaleiL 29 
                 +v +L+d+++ v++aa++ L
  KOO24243.1 124 IVARLEDSDSGVRSAAVSTL 143
                 6899************9987 PP

  == domain 3  score: -1.1 bits;  conditional E-value: 2.3
  RasGEF_N_2  10 lvnqLydqsrevvaaaleiLee 31 
                 ++ +L+ ++++v++aa++ L +
  KOO24243.1 158 ILARLKHSDSDVREAAVSTLGQ 179
                 5789999**********99865 PP

  == domain 4  score: -1.4 bits;  conditional E-value: 2.8
  RasGEF_N_2  10 lvnqLydqsrevvaaaleiL 29 
                 ++ +L+d+++ v++aa++ L
  KOO24243.1 192 ILARLEDSDSGVRKAAVSTL 211
                 57899***********9987 PP

  == domain 5  score: 0.4 bits;  conditional E-value: 0.77
  RasGEF_N_2  10 lvnqLydqsrevvaaaleiLee 31 
                 +v +L+d+++ v++aa++ L +
  KOO24243.1 328 IVARLKDSDSGVRKAAVSTLGK 349
                 5788999999999999988865 PP

  == domain 6  score: -2.0 bits;  conditional E-value: 4.2
  RasGEF_N_2  12 nqLydqsrevvaaaleiLeea 32 
                  +L+ +++ v++aa++ L + 
  KOO24243.1 364 ARLKHSDSGVREAAVSTLGQL 384
                 566666666666666665433 PP

  == domain 7  score: -1.2 bits;  conditional E-value: 2.3
  RasGEF_N_2  10 lvnqLydqsrevvaaaleiLee 31 
                 +v +L+d+++ v+aaa+  L +
  KOO24243.1 464 IVARLKDSDSGVRAAAVWTLGK 485
                 5788999999999998876644 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (525 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       340  (0.0189637); expected 358.6 (0.02)
Passed bias filter:                      185  (0.0103185); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                        19  (0.00105974); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              16  [number of targets reported over threshold]
# CPU time: 0.78u 0.32s 00:00:01.10 Elapsed: 00:00:00.49
# Mc/sec: 3238.58
//
Query:       KOO24244.1  [L=318]
Description: hypothetical protein Ctob_001254 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.4e-14   51.2   0.1    2.5e-06   26.6   0.0    2.7  2  EF-hand_1  EF hand
    2.3e-13   48.9   0.1    2.4e-06   27.0   0.0    2.9  2  EF-hand_6  EF-hand domain
    3.1e-11   42.3   0.4    1.1e-05   24.7   0.0    2.7  2  EF-hand_5  EF hand
    1.3e-10   41.6   0.2    3.7e-10   40.1   0.0    1.8  2  EF-hand_7  EF-hand domain pair
    7.1e-08   32.2   0.5    1.1e-05   25.2   0.1    2.9  3  EF-hand_8  EF-hand domain pair
  ------ inclusion threshold ------
      0.013   15.5   0.1        7.1    6.6   0.0    2.4  2  EF-hand_4  Cytoskeletal-regulatory complex EF hand
      0.085   13.1   0.0       0.17   12.1   0.0    1.4  1  SdrD_B     SdrD B-like domain
       0.16   11.9   0.0          8    6.4   0.0    2.4  2  Caleosin   Caleosin related protein


Domain annotation for each model (and alignments):
>> EF-hand_1  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.6   0.0   1.1e-09   2.5e-06       2      28 ..      46      72 ..      45      73 .. 0.92
   2 !   22.1   0.0   3.1e-08     7e-05       2      28 ..      82     108 ..      81     109 .. 0.91

  Alignments for each domain:
  == domain 1  score: 26.6 bits;  conditional E-value: 1.1e-09
                HHHHHHHHTTTSSSEEEHHHHHHHHHH CS
   EF-hand_1  2 lkeiFrefDkDgdGkIdfeEfkellkk 28
                l+e+F ++D++gdG Id +Ef++ +++
  KOO24244.1 46 LRELFHLLDTNGDGEIDPSEFVKGVQE 72
                79********************99875 PP

  == domain 2  score: 22.1 bits;  conditional E-value: 3.1e-08
                 HHHHHHHHTTTSSSEEEHHHHHHHHHH CS
   EF-hand_1   2 lkeiFrefDkDgdGkIdfeEfkellkk 28 
                 +++++ ++D+D++G+Idf E+ + l+k
  KOO24244.1  82 VERLMTIIDTDHSGTIDFHELAKGLQK 108
                 678999****************99987 PP

>> EF-hand_6  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.0   0.0   1.1e-09   2.4e-06       2      27 ..      46      71 ..      45      78 .. 0.91
   2 !   18.8   0.0   4.7e-07    0.0011       7      28 ..      87     108 ..      81     117 .. 0.86

  Alignments for each domain:
  == domain 1  score: 27.0 bits;  conditional E-value: 1.1e-09
   EF-hand_6  2 lreaFklfDkdgdGkidaeElrkalr 27
                lre+F+l+D++gdG+id++E++k  +
  KOO24244.1 46 LRELFHLLDTNGDGEIDPSEFVKGVQ 71
                89*******************99765 PP

  == domain 2  score: 18.8 bits;  conditional E-value: 4.7e-07
   EF-hand_6   7 klfDkdgdGkidaeElrkalrk 28 
                  ++D+d++G+id++El k l+k
  KOO24244.1  87 TIIDTDHSGTIDFHELAKGLQK 108
                 689***************9995 PP

>> EF-hand_5  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.7   0.0   4.9e-09   1.1e-05       1      22 [.      46      67 ..      46      73 .. 0.89
   2 !   15.1   0.1   5.4e-06     0.012       8      23 ..      89     104 ..      83     110 .. 0.89

  Alignments for each domain:
  == domain 1  score: 24.7 bits;  conditional E-value: 4.9e-09
                HHHHHHHH-SS-SSCE-HHHHH CS
   EF-hand_5  1 lkdtFqaiDlNgDGkIskeELk 22
                l+++F  +D+NgDG I+++E+ 
  KOO24244.1 46 LRELFHLLDTNGDGEIDPSEFV 67
                6889*****************5 PP

  == domain 2  score: 15.1 bits;  conditional E-value: 5.4e-06
                 H-SS-SSCE-HHHHHH CS
   EF-hand_5   8 iDlNgDGkIskeELkt 23 
                 iD++++G+I++ EL +
  KOO24244.1  89 IDTDHSGTIDFHELAK 104
                 9*************75 PP

>> EF-hand_7  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.1   0.0   1.7e-13   3.7e-10       4      68 ..      46     104 ..      45     107 .. 0.94
   2 ?   -3.3   0.0       5.6   1.3e+04      42      58 ..     145     161 ..     123     161 .. 0.58

  Alignments for each domain:
  == domain 1  score: 40.1 bits;  conditional E-value: 1.7e-13
   EF-hand_7   4 lkeaFkelDtdgdgyldkeellrllrkifqgagegsklsdeelellfkefDtdkdGvisfdEFlk 68 
                 l+e F +lDt+gdg +d++e+ + ++      + +  ls  ++e+l+  +Dtd++G+i+f E+ k
  KOO24244.1  46 LRELFHLLDTNGDGEIDPSEFVKGVQ------ELEGCLSVSQVERLMTIIDTDHSGTIDFHELAK 104
                 7899****************999***......999999***********************9876 PP

  == domain 2  score: -3.3 bits;  conditional E-value: 5.6
   EF-hand_7  42 sdeelellfkefDtdkd 58 
                 + +   +  k++D+ kd
  KOO24244.1 145 RADVATQAAKDIDLAKD 161
                 33444455666676665 PP

>> EF-hand_8  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.8   0.0   3.7e-05     0.083      29      54 ..      47      72 ..      44      73 .. 0.90
   2 !   25.2   0.1   4.8e-09   1.1e-05       2      53 ..      58     107 ..      57     108 .. 0.93
   3 ?   -1.0   0.0      0.75   1.7e+03      22      36 ..     183     197 ..     172     198 .. 0.80

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 3.7e-05
   EF-hand_8 29 dilfrefDtdgdGkisfeEFcvller 54
                ++lf ++Dt+gdG i+  EF+  +++
  KOO24244.1 47 RELFHLLDTNGDGEIDPSEFVKGVQE 72
                78******************988775 PP

  == domain 2  score: 25.2 bits;  conditional E-value: 4.8e-09
   EF-hand_8   2 kgkItreelrrilrilglkk...glseeevdilfrefDtdgdGkisfeEFcvlle 53 
                 +g+I++ e+++     g ++    ls ++v+ l+  +Dtd++G+i+f E    l+
  KOO24244.1  58 DGEIDPSEFVK-----GVQElegCLSVSQVERLMTIIDTDHSGTIDFHELAKGLQ 107
                 8**********.....******9*************************9877665 PP

  == domain 3  score: -1.0 bits;  conditional E-value: 0.75
   EF-hand_8  22 glseeevdilfrefD 36 
                 +l +e+v +l++ +D
  KOO24244.1 183 QLPAEAVKTLLKQLD 197
                 5999********999 PP

>> EF-hand_4  Cytoskeletal-regulatory complex EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.4   0.0    0.0037       8.2      20      66 ..      24      67 ..      13      74 .. 0.74
   2 ?    6.6   0.0    0.0032       7.1      40      67 ..      77     104 ..      69     117 .. 0.87

  Alignments for each domain:
  == domain 1  score: 6.4 bits;  conditional E-value: 0.0037
   EF-hand_4 20 kpednkltgdkvapvlknskleedklekiwdladidedgkldfeefc 66
                + +d+ l ++kv   l    l    l ++++l d + dg++d  ef+
  KOO24244.1 24 QRRDEALVQNKVLRALSRRGL---SLRELFHLLDTNGDGEIDPSEFV 67
                455555555555555554444...68999*****************8 PP

  == domain 2  score: 6.6 bits;  conditional E-value: 0.0032
   EF-hand_4  40 leedklekiwdladidedgkldfeefci 67 
                 l+ +++e++ ++ d d+ g++df+e++ 
  KOO24244.1  77 LSVSQVERLMTIIDTDHSGTIDFHELAK 104
                 677899*******************875 PP

>> SdrD_B  SdrD B-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   7.5e-05      0.17       9      64 ..      53     111 ..      47     135 .. 0.86

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 7.5e-05
      SdrD_B   9 eDanknGiqdage..kgisgvtVtLkdakgevv.atttTdasGkYkFtnltpGeYkVef 64 
                  D+n++G  d  e  kg++  +  L  ++ e + +   Td+sG+  F++l++G  k+ +
  KOO24244.1  53 LDTNGDGEIDPSEfvKGVQELEGCLSVSQVERLmTIIDTDHSGTIDFHELAKGLQKIDL 111
                 59***********99**********8888888835567**************9876655 PP

>> Caleosin  Caleosin related protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.4   0.0    0.0036         8      12      41 ..      52      81 ..      44      89 .. 0.81
   2 ?    3.4   0.0     0.029        65      12      55 ..      88     131 ..      78     148 .. 0.78

  Alignments for each domain:
  == domain 1  score: 6.4 bits;  conditional E-value: 0.0036
    Caleosin 12 FfDrdkdGiiypldtyrgfralgfnvllsl 41
                  D++ dG i p++  +g+++l+  + +s 
  KOO24244.1 52 LLDTNGDGEIDPSEFVKGVQELEGCLSVSQ 81
                57*******************986666665 PP

  == domain 2  score: 3.4 bits;  conditional E-value: 0.029
    Caleosin  12 FfDrdkdGiiypldtyrgfralgfnvllsllaalvihlalsypt 55 
                   D+d+ G+i +++  +g++++++ v +   + +v+ l  + ++
  KOO24244.1  88 IIDTDHSGTIDFHELAKGLQKIDLRVEVYEYMLVVMRLYSAEMA 131
                 569*******************9998887777777766655555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (318 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       791  (0.0441185); expected 358.6 (0.02)
Passed bias filter:                      538  (0.0300073); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.47u 0.27s 00:00:00.74 Elapsed: 00:00:00.41
# Mc/sec: 2350.76
//
Query:       KOO24245.1  [L=662]
Description: ankyrin [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.4e-15   56.2   0.2    1.3e-06   28.6   0.0    3.4  3  Ank             Ankyrin repeat
    8.6e-15   55.1   0.0    2.9e-12   47.0   0.0    2.7  2  Ank_2           Ankyrin repeats (3 copies)
    1.5e-12   47.8   0.1    4.6e-06   27.1   0.0    3.2  3  Ank_4           Ankyrin repeats (many copies)
      1e-09   37.8   0.0     0.0013   19.1   0.0    3.8  4  Ank_3           Ankyrin repeat
    2.4e-08   34.1   0.1     0.0001   22.5   0.0    3.4  3  Ank_5           Ankyrin repeats (many copies)
    2.3e-05   24.9   0.0    4.4e-05   24.0   0.0    1.4  1  OTU             OTU-like cysteine protease
  ------ inclusion threshold ------
      0.021   14.5   2.5        1.7    8.3   0.0    2.8  3  AraC_binding_2  AraC-binding-like domain


Domain annotation for each model (and alignments):
>> Ank  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.9   0.0   3.2e-08   8.2e-05       3      28 ..     534     560 ..     533     564 .. 0.94
   2 !   28.6   0.0   5.1e-10   1.3e-06       2      31 ..     567     597 ..     566     598 .. 0.93
   3 ?    0.2   0.0      0.47   1.2e+03      11      27 ..     611     628 ..     603     633 .. 0.66

  Alignments for each domain:
  == domain 1  score: 22.9 bits;  conditional E-value: 3.2e-08
                 BBHHHHHHHHTTHHHHHHHH.TTTSTT CS
         Ank   3 nTPLHlAatngkkriiklLL.hGAnln 28 
                  T+L+lAa +g+++++k+L+ +GA++n
  KOO24245.1 534 KTALMLAAERGHVSVAKELIlNGADPN 560
                 5******************99*****9 PP

  == domain 2  score: 28.6 bits;  conditional E-value: 5.1e-10
                 SBBHHHHHHHHTTHHHHHHHH.TTTSTTCBT CS
         Ank   2 GnTPLHlAatngkkriiklLL.hGAnlnald 31 
                 G+TPL+ Aa  g++++i lL+  GA+++a++
  KOO24245.1 567 GFTPLMAAAAWGQADVITLLIsAGADVDART 597
                 9*****99999**********77******98 PP

  == domain 3  score: 0.2 bits;  conditional E-value: 0.47
                 HHTTHHHHHHHH.TTTST CS
         Ank  11 tngkkriiklLL.hGAnl 27 
                  +g+ ++++ LL  GA l
  KOO24245.1 611 KRGHGEVVRKLLiAGATL 628
                 567778998555499976 PP

>> Ank_2  Ankyrin repeats (3 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.0   0.0   1.2e-15   2.9e-12       6      82 ..     508     596 ..     503     597 .. 0.79
   2 ?    5.2   0.0     0.013        33      28      63 ..     604     645 ..     597     652 .. 0.69

  Alignments for each domain:
  == domain 1  score: 47.0 bits;  conditional E-value: 1.2e-15
       Ank_2   6 kngnlelvklLl.egadpn...k.ngktaLhyAakngnleivklLleh.adnd......grtpLhyAarsghleivklLlekgadinlk 82 
                   gnl  v+ Ll +g+ ++   +   ktaL++Aa++g++ ++k L+ + ad +      g tpL++Aa +g+ +++ lL+  gad++++
  KOO24245.1 508 DRGNLTKVRVLLaSGVPADtsmDsGQKTALMLAAERGHVSVAKELILNgADPNgtskllGFTPLMAAAAWGQADVITLLISAGADVDAR 596
                 56888899****988666654535669*************9*99997675522234455*********************88***9976 PP

  == domain 2  score: 5.2 bits;  conditional E-value: 0.013
       Ank_2  28 taLhyAakngnleiv.klLleh......adndgrtpLhyAars 63 
                 +a+ +A k+g+ e+v klL++       + +  r++L +Aa++
  KOO24245.1 604 SAIDIAQKRGHGEVVrKLLIAGatlpamV-DPTRSVLELAASN 645
                 67788999999999956666644555433.4467888888864 PP

>> Ank_4  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5   0.0   1.8e-06    0.0047      11      55 .]     509     553 ..     502     553 .. 0.90
   2 !   27.1   0.0   1.8e-09   4.6e-06       3      55 .]     535     587 ..     535     587 .. 0.95
   3 !   16.2   0.0   4.5e-06     0.012       3      55 .]     569     622 ..     569     622 .. 0.92

  Alignments for each domain:
  == domain 1  score: 17.5 bits;  conditional E-value: 1.8e-06
       Ank_4  11 sgrlelvrlLlekgadinaqdnrsGetalhiAakrgnveilklLl 55 
                  g+l  vr Ll++g+  + + ++ + tal  Aa rg+v+++k L+
  KOO24245.1 509 RGNLTKVRVLLASGVPADTSMDSGQKTALMLAAERGHVSVAKELI 553
                 788889*************9888899***************9886 PP

  == domain 2  score: 27.1 bits;  conditional E-value: 1.8e-09
       Ank_4   3 taLhyaaisgrlelvrlLlekgadinaqdnrsGetalhiAakrgnveilklLl 55 
                 taL  aa+ g++ +++ L+ +gad+n ++   G+t+l  Aa +g+ +++ lL+
  KOO24245.1 535 TALMLAAERGHVSVAKELILNGADPNGTSKLLGFTPLMAAAAWGQADVITLLI 587
                 68889999********************8888*******************98 PP

  == domain 3  score: 16.2 bits;  conditional E-value: 4.5e-06
       Ank_4   3 taLhyaaisgrlelvrlLlekgadinaq.dnrsGetalhiAakrgnveilklLl 55 
                 t+L +aa+ g+ +++ lL++ gad++a+   ++  +a++iA krg+ e+++ Ll
  KOO24245.1 569 TPLMAAAAWGQADVITLLISAGADVDARtVTANAVSAIDIAQKRGHGEVVRKLL 622
                 78999***********************65577799**************9987 PP

>> Ank_3  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.5   0.0       1.2     3e+03       6      29 ..     503     525 ..     503     527 .. 0.82
   2 !   19.1   0.0     5e-07    0.0013       3      30 ..     534     560 ..     532     561 .. 0.94
   3 !   13.8   0.0   2.5e-05     0.065       2      31 .]     567     595 ..     566     595 .. 0.94
   4 ?   -3.6   0.0         7   1.8e+04      12      23 ..     612     623 ..     605     627 .. 0.75

  Alignments for each domain:
  == domain 1  score: -0.5 bits;  conditional E-value: 1.2
       Ank_3   6 LhlAarsgnleivkfLlenkgadv 29 
                 L+l +  gnl+ v+ Ll   g++ 
  KOO24245.1 503 LMLEIDRGNLTKVRVLLA-SGVPA 525
                 788889999999*****9.67765 PP

  == domain 2  score: 19.1 bits;  conditional E-value: 5e-07
       Ank_3   3 etpLhlAarsgnleivkfLlenkgadvn 30 
                  t+L+lAa+ g+++++k L+  +gad+n
  KOO24245.1 534 KTALMLAAERGHVSVAKELIL-NGADPN 560
                 69*******************.8****9 PP

  == domain 3  score: 13.8 bits;  conditional E-value: 2.5e-05
       Ank_3   2 GetpLhlAarsgnleivkfLlenkgadvna 31 
                 G tpL+ Aa  g  +++ +L+   gadv+a
  KOO24245.1 567 GFTPLMAAAAWGQADVITLLIS-AGADVDA 595
                 88********************.9***985 PP

  == domain 4  score: -3.6 bits;  conditional E-value: 7
       Ank_3  12 sgnleivkfLle 23 
                  g+ e+v+ Ll 
  KOO24245.1 612 RGHGEVVRKLLI 623
                 578889999886 PP

>> Ank_5  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.5   0.0   4.1e-08    0.0001       1      52 [.     518     570 ..     518     571 .. 0.83
   2 !    6.8   0.0    0.0033       8.6      16      48 ..     567     601 ..     563     609 .. 0.74
   3 ?    5.3   0.0      0.01        26       1      38 [.     586     624 ..     586     642 .. 0.77

  Alignments for each domain:
  == domain 1  score: 22.5 bits;  conditional E-value: 4.1e-08
       Ank_5   1 Llehg.padvnrldgggntpLhvAakygaadvvrlLlargadlnltdsrG.lta 52 
                 Ll+ g pad+    g + t+L++Aa++g+ +v+++L+ +gad+n t +    t+
  KOO24245.1 518 LLASGvPADTSMDSGQK-TALMLAAERGHVSVAKELILNGADPNGTSKLLgFTP 570
                 56667788887777777.**************************9987655555 PP

  == domain 2  score: 6.8 bits;  conditional E-value: 0.0033
       Ank_5  16 gntpLhvAakygaadvvrlLl..argadlnltdsr 48 
                 g+tpL+ Aa  g adv+ lL+     +d+++ +++
  KOO24245.1 567 GFTPLMAAAAWGQADVITLLIsaGADVDARTVTAN 601
                 89*******************55555555555555 PP

  == domain 3  score: 5.3 bits;  conditional E-value: 0.01
       Ank_5   1 Llehg.padvnrldgggntpLhvAakygaadvvrlLlar 38 
                 L+++g ++d  +   + ++++ +A k+g+ +vvr+Ll  
  KOO24245.1 586 LISAGaDVDARTVTANAVSAIDIAQKRGHGEVVRKLLIA 624
                 6778855555555555569******************33 PP

>> OTU  OTU-like cysteine protease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.0   0.0   1.7e-08   4.4e-05       1      88 [.     308     415 ..     308     443 .. 0.74

  Alignments for each domain:
  == domain 1  score: 24.0 bits;  conditional E-value: 1.7e-08
                 --SS-HHHHHHHHCCCSS.S.......HCCHHHHHHHHHCHHHHHHTSSHHCCHHHHCCHHH.....HHHHTTSTT.HHHH.......HHHHHHHHHHC CS
         OTU   1 rgDGnCLlravsqqlwgvsd.......elrkakvseLreklaeylrehseelelfleeeeeg.....ylkeiekta.awgg.......eleifalahiL 79 
                 +gD nC ++a+++ql  + +       +lr++ v+ L+++  +++ + +   +++l++++ +     yl e+e+++  wg+          + a++ ++
  KOO24245.1 308 PGDNNCQFHAIADQLEQQVGfggynalKLRQKAVQWLKTNGSRAMDDGKVGERFMLKDSVGVdnwhaYLAEMEQHGrTWGDeatllamSATLLAMSVLF 406
                 6899***********8666688888888899999999999999999888888888777766677777********989***555555545555555555 PP

                 TS-EEEETT CS
         OTU  80 rrpIiVlks 88 
                 +  I V++s
  KOO24245.1 407 KAEICVISS 415
                 666666544 PP

>> AraC_binding_2  AraC-binding-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.5   0.1     0.005        13      91     124 ..      64     100 ..      30     142 .. 0.69
   2 ?    8.3   0.0   0.00065       1.7      73     117 ..     474     525 ..     470     549 .. 0.79
   3 ?   -3.0   0.1         2     5e+03     102     151 ..     583     634 ..     576     645 .. 0.66

  Alignments for each domain:
  == domain 1  score: 5.5 bits;  conditional E-value: 0.005
  AraC_binding_2  91 yrlrwsa...dceqlvlripralLerplraplrfapr 124
                     y++r ++    +eq  l +p++ L+rpl +p +++ +
      KOO24245.1  64 YTIRCEGvekQVEQQQLALPTTALARPLAGPYQLPTT 100
                     5566555555899*****************9998855 PP

  == domain 2  score: 8.3 bits;  conditional E-value: 0.00065
  AraC_binding_2  73 revvlgpgdavvldpgrpyrlrwsadceqlvlrip.......ralLerplra 117
                     + vv+ +++++++++g+p +++ + + eql+l i+       r lL+  + a
      KOO24245.1 474 TKVVAPRQQGLIAATGEPASFEQPMTGEQLMLEIDrgnltkvRVLLASGVPA 525
                     5789999****************************65555555555555544 PP

  == domain 3  score: -3.0 bits;  conditional E-value: 2
  AraC_binding_2 102 lvlrip..ralLerplraplrfaprldldsgagalwrrllrslvaelaelgp 151
                     ++l i+  +++ +r++ a    a  + + +g g ++r ll + ++ +a  +p
      KOO24245.1 583 ITLLISagADVDARTVTANAVSAIDIAQKRGHGEVVRKLLIAGATLPAMVDP 634
                     5555555556666777777777777777788888888877777776666666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (662 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       508  (0.028334); expected 358.6 (0.02)
Passed bias filter:                      395  (0.0220313); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.60u 0.26s 00:00:00.86 Elapsed: 00:00:00.42
# Mc/sec: 4709.51
//
Query:       KOO24246.1  [L=596]
Description: hypothetical protein Ctob_001256 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.4e-12   46.0   2.7      1e-05   25.3   0.1    2.5  2  PDZ_6           PDZ domain
    1.2e-08   35.1   0.1    6.8e-05   23.1   0.0    2.5  2  PDZ             PDZ domain
  ------ inclusion threshold ------
      0.014   15.4   0.2       0.46   10.5   0.0    2.5  2  Tricorn_PDZ     Tricorn protease PDZ domain


Domain annotation for each model (and alignments):
>> PDZ_6  PDZ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.3   0.1   1.7e-09     1e-05       1      47 [.     153     198 ..     153     202 .. 0.95
   2 !   20.3   0.3   5.9e-08   0.00035       4      47 ..     486     528 ..     485     534 .. 0.85

  Alignments for each domain:
  == domain 1  score: 25.3 bits;  conditional E-value: 1.7e-09
       PDZ_6   1 vVtaVdpgsPAdrAG.lrvGDiilsvNGqpveglsladvaallrgsag 47 
                 v+ta  pg+ A+  G + ++ ++++vNGq v  ++ +++ allr+++g
  KOO24246.1 153 VITALAPGCLAAASGrITINQLLVAVNGQRV--HTHEEATALLRNAVG 198
                 68999**************************..***********9987 PP

  == domain 2  score: 20.3 bits;  conditional E-value: 5.9e-08
       PDZ_6   4 aVdpgsPAdrAG.lrvGDiilsvNGqpveglsladvaallrgsag 47 
                  V +g++A++ G + +G ++++vNG+ +  l  ++ ++ lr+++g
  KOO24246.1 486 GVGKGCIAAESGeILPGQLLVAVNGEAI--LGHDHGSQVLRAAVG 528
                 6899************************..888888888885554 PP

>> PDZ  PDZ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.1   0.0   1.1e-08   6.8e-05       2      81 ..     118     204 ..     117     205 .. 0.87
   2 !    9.4   0.1   0.00022       1.3      33      80 ..     487     533 ..     485     535 .. 0.74

  Alignments for each domain:
  == domain 1  score: 23.1 bits;  conditional E-value: 1.1e-08
                 EEEETS.TTSESSEEEEEETTSS.......SSSSEEEEEECTTSHHHHHT.SSTTEEEEEETTEETTTSHHHHHHHHHHTTTSEEEEEE CS
         PDZ   2 vsleke.grgglGfslkggsdqr.......gdkgifvsevlpggaaeadg.lkvGDkIlsvNgvdvenvsheeavqaikgskgkvtLti 81 
                 v+l+k+    +lG++l   ++ +         +  +++ + pg  a+a+g + ++  +++vNg+ v  ++heea ++++++ g v L +
  KOO24246.1 118 VTLHKPdASARLGITLINSDETHaprgptaPITAPVITALAPGCLAAASGrITINQLLVAVNGQRV--HTHEEATALLRNAVGDVELDV 204
                 66777778999999999777777999999999999********99999999*************99..567999999999999887765 PP

  == domain 2  score: 9.4 bits;  conditional E-value: 0.00022
                 ECTT.SHHHHHT.SSTTEEEEEETTEETTTSHHHHHHHHHHTTTSEEEEE CS
         PDZ  33 vlpg.gaaeadg.lkvGDkIlsvNgvdvenvsheeavqaikgskgkvtLt 80 
                 v +g  aae +g + +G  +++vNg+ + ++  ++  q+++ + g+++Lt
  KOO24246.1 487 VGKGcIAAE-SGeILPGQLLVAVNGEAILGH--DHGSQVLRAAVGVIRLT 533
                 667845555.555***************877..55666677777777777 PP

>> Tricorn_PDZ  Tricorn protease PDZ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.0   7.8e-05      0.46      44      81 ..     173     209 ..     160     213 .. 0.89
   2 ?    2.1   0.0     0.032   1.9e+02      41      78 ..     500     536 ..     491     541 .. 0.79

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 7.8e-05
                  -EEEEETTEE-BTTB-HHHHHHTTTTSEEEEEEE-STT CS
  Tricorn_PDZ  44 dlilavdgepvskekgiaelLvgkagkeveLtvkrkdg 81 
                  +l++av+g++v+++++   lL ++ g +veL+v++++g
   KOO24246.1 173 QLLVAVNGQRVHTHEEATALLRNAVG-DVELDVTASGG 209
                  6799*******************999.9****998765 PP

  == domain 2  score: 2.1 bits;  conditional E-value: 0.032
                  .TT-EEEEETTEE-BTTB-HHHHHHTTTTSEEEEEEE- CS
  Tricorn_PDZ  41 reGdlilavdgepvskekgiaelLvgkagkeveLtvkr 78 
                    G+l++av+ge +  ++  +++L  + g  ++Lt+++
   KOO24246.1 500 LPGQLLVAVNGEAILGHDHGSQVLRAAVG-VIRLTLSS 536
                  579**********9988777777777666.67777765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (596 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       560  (0.0312343); expected 358.6 (0.02)
Passed bias filter:                      334  (0.018629); expected 358.6 (0.02)
Passed Vit filter:                        49  (0.002733); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.56u 0.23s 00:00:00.79 Elapsed: 00:00:00.39
# Mc/sec: 4566.53
//
Query:       KOO24247.1  [L=623]
Description: hypothetical protein Ctob_001257 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    0.00021   20.3   0.0    0.00054   19.0   0.0    1.6  1  Gal-3-0_sulfotr  Galactose-3-O-sulfotransferase
     0.0028   18.1   4.0     0.0028   18.1   4.0    2.2  2  ShK              ShK domain-like


Domain annotation for each model (and alignments):
>> Gal-3-0_sulfotr  Galactose-3-O-sulfotransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.0   0.0     6e-08   0.00054     229     339 ..     226     342 ..     216     358 .. 0.75

  Alignments for each domain:
  == domain 1  score: 19.0 bits;  conditional E-value: 6e-08
  Gal-3-0_sulfotr 229 rerileverrfrlvliaeyldeslvllrrllaWelddvlyfk.....lnaraas.svarlsaelae...raraWnaldarlyehfnatlWrkva 313
                      r++++ +   f lv + e +de+l+ll +l    l+ +l ++      n   a+ sv+ +++ +a+   r r  + +d +ly  f a++ +kv 
       KOO24247.1 226 RALLRSLLSSFDLVGLMERFDETLLLLADLTG--LQRLLHMRavpgtTNPHYAQpSVSAVCPDPAAcdaRIREVAPFDHELYAAFSAAFAAKVS 317
                      5667777889******************9864..344444431111156654442799999999888778999999****************** PP

  Gal-3-0_sulfotr 314 elGrerlereveelrearerlaslcl 339
                      +lG   ++   +++r+a+   +s  l
       KOO24247.1 318 ALGAP-FQARLRAFRQANAAYQSQTL 342
                      ***76.45557888888877766655 PP

>> ShK  ShK domain-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.2       1.6   1.4e+04       6      14 ..      72      80 ..      71      81 .. 0.72
   2 !   18.1   4.0   3.2e-07    0.0028      15      38 .]     567     587 ..     552     587 .. 0.81

  Alignments for each domain:
  == domain 1  score: -3.3 bits;  conditional E-value: 1.6
         ShK  6 ssdCaswaa 14
                + +C+ w +
  KOO24247.1 72 NASCSDWDR 80
                568999975 PP

  == domain 2  score: 18.1 bits;  conditional E-value: 3.2e-07
         ShK  15 lgfCtnptyrdlmkeqCpktCgfC 38 
                 +g C    ++++m+++C ktCg+C
  KOO24247.1 567 QGPCA---TSSWMRTNCKKTCGLC 587
                 45685...568************* PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (623 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       471  (0.0262703); expected 358.6 (0.02)
Passed bias filter:                      318  (0.0177366); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.50u 0.26s 00:00:00.76 Elapsed: 00:00:00.39
# Mc/sec: 4809.48
//
Query:       KOO24248.1  [L=254]
Description: hypothetical protein Ctob_001260 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      7e-12   45.3   0.0    8.7e-12   45.0   0.0    1.3  1  CRAL_TRIO  CRAL/TRIO domain
  ------ inclusion threshold ------
      0.056   13.2   0.1      0.078   12.7   0.1    1.2  1  UPF0669    Putative cytokine, C6ORF120


Domain annotation for each model (and alignments):
>> CRAL_TRIO  CRAL/TRIO domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.0   0.0   9.7e-16   8.7e-12      57     158 ..     109     212 ..      33     213 .. 0.90

  Alignments for each domain:
  == domain 1  score: 45.0 bits;  conditional E-value: 9.7e-16
   CRAL_TRIO  57 dgqvegvtvviDlkglslskmlwkpisllkkilkilqdnyperlgkilivnaPklfkfafklvkpfldektreKikfvspsntea...tlekyidpeql 152
                 d++  +v +v D  g++ + +lwk ++ + +++ +   +yp  l+k l++naP+ +++++ ++kp+l++++++ +++  + + ++    l   +dp+ +
  KOO24248.1 109 DRTLKSVYMVSDGAGFT-LGFLWKVYKRFARTAPVADLHYPLYLRKSLLLNAPSTVHAVYAIFKPMLSKEITDTLHIFRTVDAPKaaqLLCADVDPSIV 206
                 56778999*********.77**********************************************************99999989999********** PP

   CRAL_TRIO 153 pkelGG 158
                 p+ +GG
  KOO24248.1 207 PVCYGG 212
                 *****9 PP

>> UPF0669  Putative cytokine, C6ORF120
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.1   8.7e-06     0.078      96     155 ..      43     103 ..      24     115 .. 0.77

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 8.7e-06
     UPF0669  96 dvvsipahfrrpvgigiyghpshlesefelkvyydrtveekpfgeasydsde.leakqkqa 155
                   v+  + + r vg+ +  h s +e + e  +y d++ ++    +asy+     +a+ ++ 
  KOO24248.1  43 MHVQAQELLLRVVGVQLEEHMSTHENNVEKALYKDAAETDAAEIDASYAKTAyADADARRM 103
                 4455666789*************************99999988899997543145555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (254 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       574  (0.0320152); expected 358.6 (0.02)
Passed bias filter:                      450  (0.025099); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.39u 0.26s 00:00:00.65 Elapsed: 00:00:00.37
# Mc/sec: 2063.78
//
Query:       KOO24249.1  [L=573]
Description: hypothetical protein Ctob_001249 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
      7e-12   45.4   0.0    1.5e-11   44.3   0.0    1.4  1  Choline_kinase  Choline/ethanolamine kinase
    0.00011   21.9   0.0    0.00018   21.2   0.0    1.3  1  CDKN3           Cyclin-dependent kinase inhibitor 3 (CDKN3)
     0.0047   16.7   0.0     0.0076   16.1   0.0    1.2  1  DSPc            Dual specificity phosphatase, catalytic domai
     0.0071   16.3   0.0      0.011   15.8   0.0    1.3  1  Y_phosphatase3  Tyrosine phosphatase family
  ------ inclusion threshold ------
      0.045   13.3   0.0      0.071   12.7   0.0    1.2  1  Y_phosphatase   Protein-tyrosine phosphatase


Domain annotation for each model (and alignments):
>> Choline_kinase  Choline/ethanolamine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.3   0.0   4.2e-15   1.5e-11      14     196 ..     243     465 ..     235     477 .. 0.76

  Alignments for each domain:
  == domain 1  score: 44.3 bits;  conditional E-value: 4.2e-15
                     CTTCCHHHHHHHHHHHHHH....TTSSS-EEEEETT..EEEEE--TCEE--TTGGGCHHHHHHHHHHHHHHTTCHH................... CS
  Choline_kinase  14 teelidretElvvfallse....rglgpklygifen..GrieefiesrtlstedlrepeiskkiAkklaelHslel................... 83 
                     + +l +re+E   +  l++      l ++l+   ++  G +ee+i++++l   ++ +      iA+ +++lH+  l                   
      KOO24249.1 243 NAKLTNRERERRLMDHLAAvapdGALCKRLLYALPGghGHVEEWIDGHPLRFSQMMQAPYRGLIAALMGRLHACPLlpadadvavddadkarlwt 337
                     66777777777766666541111345666666666622689****************************************************** PP

                     ........TTSSSS-HHHHHHHHH......HHCCS.TT..ECHHGGCCHCCCTHHHHHHHHHTHHHHHHCHGG-EEEE-S--SGGGEEE...-CT CS
  Choline_kinase  84 .......eseskespslwktmqkw......llnkeaqtkakkekkkkqlklinledlekelekleklleelespvvfcHnDlqegNill..nkee 163
                              +  ++  lw++m+ w         +  ++ + ++  +   +l   + l+ e++++ +       + +  H D+   N+l+  +   
      KOO24249.1 338 emegdgpRWTEMDKARLWTEMEAWaaalpgDWTEIGRRLDGDWGPHVPPSLPVRKALMAEVQWVSQEGVVAPTKSTIIHKDVHALNLLQlpAAAG 432
                     *****87556667889********885444222222233333334444555555666666666666665566668888**********9888999 PP

                     TEEEE--GTT-EEEEHHHHHHHHHHHTTEEHHH CS
  Choline_kinase 164 kklvlIDFEYagynyrgfDlanhfiEwagdyee 196
                     ++l lID E+a + + +fD+an+f E a+ +e+
      KOO24249.1 433 GSLRLIDAEFADVGPSAFDVANFFLECAFVEED 465
                     ***************************996554 PP

>> CDKN3  Cyclin-dependent kinase inhibitor 3 (CDKN3)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.2   0.0     5e-08   0.00018     100     160 ..     108     169 ..      97     176 .. 0.84

  Alignments for each domain:
  == domain 1  score: 21.2 bits;  conditional E-value: 5e-08
                 T-EEEE----TTS.---HHHHHHHHHHHHHHHHTT--EEEE-SSSSSHHHHHHHHHHHHH-S CS
       CDKN3 100 givthhhpiadgg.tpdiascleimeelatclknyrktlihcygglgrsclvaaclllylsd 160
                  i  +h pi+d g   d      ++ee  + +      l+hc gg grs +v+acl+  l d
  KOO24249.1 108 PISWQHFPIPDYGvVADDEQLRGLLEESLARIAAGGVLLVHCMGGHGRSGIVCACLVGALLD 169
                 566789*****772578899999****99999************************877665 PP

>> DSPc  Dual specificity phosphatase, catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.0   2.1e-06    0.0076      72     113 ..     141     182 ..     123     193 .. 0.87

  Alignments for each domain:
  == domain 1  score: 16.1 bits;  conditional E-value: 2.1e-06
                 TT-EEEEEESSSSSHHHHHHHHHHHHHHTSCHHHHHHHHHHH CS
        DSPc  72 kgkkvlVHCqaGisRSatliiaYlmktknlslneayeflker 113
                  g+  lVHC+ G  RS+ ++++       ls++ a+e+++  
  KOO24249.1 141 AGGVLLVHCMGGHGRSGIVCACLVGALLDLSADAAIELVQHA 182
                 67889*****************99999999999999999765 PP

>> Y_phosphatase3  Tyrosine phosphatase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.0     3e-06     0.011     111     150 ..     133     173 ..      54     210 .. 0.78

  Alignments for each domain:
  == domain 1  score: 15.8 bits;  conditional E-value: 3e-06
  Y_phosphatase3 111 rkvfealadee.pvlfHCtaGKDRTGvlaallls.llGvdee 150
                     ++ +  +a+ +  +l+HC  G  R G+++a l   ll+++ +
      KOO24249.1 133 EESLARIAA-GgVLLVHCMGGHGRSGIVCACLVGaLLDLSAD 173
                     333444555.3699**************99876515566555 PP

>> Y_phosphatase  Protein-tyrosine phosphatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0     2e-05     0.071     159     213 ..     132     186 ..      93     196 .. 0.69

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 2e-05
                    HHHHHHHHSTTSS-EEEECSSSSHHHHHHHHHHH.HHHHHHHHSEEEHHHHHHHHH CS
  Y_phosphatase 159 irkvekskeaksgpvvVhCsaGvgRtgtfvaldi.llqqleaeeevdvlqivkelr 213
                    +++   +  a  g ++VhC  G gR+g+++a  + +l  l+a+  ++++q    +r
     KOO24249.1 132 LEESLARI-AAGGVLLVHCMGGHGRSGIVCACLVgALLDLSADAAIELVQHAHDMR 186
                    44444444.5667799*************997762556677767777777777776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (573 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       320  (0.0178482); expected 358.6 (0.02)
Passed bias filter:                      284  (0.0158403); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.50u 0.22s 00:00:00.72 Elapsed: 00:00:00.36
# Mc/sec: 4712.45
//
Query:       KOO24250.1  [L=213]
Description: protein of unknown function duf3342 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.5e-19   69.9   0.0    2.7e-19   69.2   0.0    1.4  1  DUF3342      Domain of unknown function (DUF3342)
    0.00029   21.0   0.0    0.00051   20.2   0.0    1.4  1  BTB          BTB/POZ domain
  ------ inclusion threshold ------
      0.092   12.8   0.0       0.17   11.9   0.0    1.4  1  RT_RNaseH_2  RNase H-like domain found in reverse transcripta


Domain annotation for each model (and alignments):
>> DUF3342  Domain of unknown function (DUF3342)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.2   0.0   4.5e-23   2.7e-19      27      97 .]       1      69 [.       1      69 [. 0.95

  Alignments for each domain:
  == domain 1  score: 69.2 bits;  conditional E-value: 4.5e-23
     DUF3342 27 mrYfeeiikryiseaqrleeidirvnCdlsifdWLmkyvkk..kkrkltpenvvsillsssfLkmeeLvdeal 97
                m+Yf++++     +++r++eidi+v+Cd++if+WLm+y+++  k + l+   v+s+l+s++fL+m++L ++++
  KOO24250.1  1 MAYFAPYL----GDDRRVDEIDISVHCDVHIFEWLMEYIHQpaKPPILDAGSVISVLISADFLQMKPLTKHCI 69
                99****99....6899************************9878899**********************9997 PP

>> BTB  BTB/POZ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.2   0.0   8.5e-08   0.00051      53     108 ..      16      73 ..       3      76 .. 0.82

  Alignments for each domain:
  == domain 1  score: 20.2 bits;  conditional E-value: 8.5e-08
                 EEEET.TSGHHHHHHHHHHHHHSEEEC-.CGGGHHHHHHHHHHHT-HHHHHHHHHHHH CS
         BTB  53 eield.dvepeafealLefiYtgeleit.seenleelLaaadllqiprlkkaceeflk 108
                 ei+++  ++ ++fe l+e+i+    +   + +++ ++L  ad+lq++ l+k+c efl 
  KOO24250.1  16 EIDISvHCDVHIFEWLMEYIHQPAKPPIlDAGSVISVLISADFLQMKPLTKHCIEFLR 73 
                 44443268999**********8866555789*************************96 PP

>> RT_RNaseH_2  RNase H-like domain found in reverse transcriptase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   2.9e-05      0.17      48      75 ..     131     156 ..     121     159 .. 0.81

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 2.9e-05
  RT_RNaseH_2  48 qedddgkerpiafaSrklskaernystt 75 
                   e +  +++ +af+Sr +++a+rn++++
   KOO24250.1 131 DEAN--TLHRCAFCSRIFTPAQRNWEQC 156
                  3334..699****************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (213 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       376  (0.0209716); expected 358.6 (0.02)
Passed bias filter:                      324  (0.0180713); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.38u 0.21s 00:00:00.59 Elapsed: 00:00:00.36
# Mc/sec: 1795.00
//
Query:       KOO24251.1  [L=211]
Description: nuclear protein set [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    7.7e-14   52.4   0.1    2.6e-12   47.5   0.1    2.2  1  SET       SET domain
  ------ inclusion threshold ------
      0.043   14.5   0.0        1.4    9.6   0.0    2.4  2  SAF       SAF domain


Domain annotation for each model (and alignments):
>> SET  SET domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.5   0.1   2.9e-16   2.6e-12       1     169 []      80     185 ..      80     185 .. 0.84

  Alignments for each domain:
  == domain 1  score: 47.5 bits;  conditional E-value: 2.9e-16
                 SCEEEESSXBXTTXEEEEEEECCEECHHHHHHHHHH.HTEEEEEXGGXXGGSXHHHHHHHTTSSHHHHHHHHHHHHHHHHHHTHHHHHHHXTTTSXXXH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
         SET   1 GrGvfAtedIpkgeficeypeeiiltkdeadksele.aylfslpeapknlaftkelakasastllqklakdqkqaekedtdaalkasskaesdlnaskp 98 
                 G+G++A edIp+g++++++     ++  e++ +e++ a+l +l+                                                       
  KOO24251.1  80 GMGIYAEEDIPAGSLVWRFEL--GVSASEYSTEECMqAKLATLS------------------------------------------------------- 121
                 89**************87774..688888888888889999988....................................................... PP

                 CCCCC.HCCCHEEEETEEEEEECCCGTTGGGCEEXSSSSEEEEEEEETTSSEEEEEESSXBXTTEEEEEXTT CS
                 xxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
         SET  99 eagaf.saiagysidaralksgngagplarflNHsCdpNcnltvqnvlrgprvavfAtrdIkkGeEltidYg 169
                  ++a+  +  +y+ ++r ++          ++NHs +pNc  +v++  ++ + + +A+rdIkkGeE+t +Y+
  KOO24251.1 122 VEEATeLLDHTYVRQGRIFNPHLDG----PLINHSLEPNC--SVRA--GDSESGSYAIRDIKKGEEITENYN 185
                 2333335566788889988888888....9**********..8888..78*********************7 PP

>> SAF  SAF domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.9   0.0     0.039   3.5e+02       5      17 ..      84      98 ..      82     117 .. 0.69
   2 ?    9.6   0.0   0.00015       1.4       5      18 ..     169     182 ..     167     183 .. 0.86

  Alignments for each domain:
  == domain 1  score: 1.9 bits;  conditional E-value: 0.039
                EESSTB-TT-BE..B CS
         SAF  5 vAardikaGevi..t 17
                +A +di+aG+ +   
  KOO24251.1 84 YAEEDIPAGSLVwrF 98
                566788888877554 PP

  == domain 2  score: 9.6 bits;  conditional E-value: 0.00015
                 EESSTB-TT-BEBT CS
         SAF   5 vAardikaGevite 18 
                 +A+rdik+Ge+ite
  KOO24251.1 169 YAIRDIKKGEEITE 182
                 69999999999987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (211 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       493  (0.0274974); expected 358.6 (0.02)
Passed bias filter:                      446  (0.0248759); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.36u 0.24s 00:00:00.60 Elapsed: 00:00:00.35
# Mc/sec: 1801.53
//
Query:       KOO24252.1  [L=389]
Description: lag1 longevity assurance-like 3 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.9e-27   96.3   8.9    3.2e-27   95.6   8.9    1.4  1  TRAM_LAG1_CLN8  TLC domain


Domain annotation for each model (and alignments):
>> TRAM_LAG1_CLN8  TLC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   95.6   8.9   1.8e-31   3.2e-27       1     197 [.      74     347 ..      74     348 .. 0.89

  Alignments for each domain:
  == domain 1  score: 95.6 bits;  conditional E-value: 1.8e-31
  TRAM_LAG1_CLN8   1 kfdervvslvqyllstvfglivlsssp........elwegy.......peril...gathfllkayyllalgYfiydllvlllyekkrkdfveml 77 
                     kf  ++++l  ++++t++  ++l+ +         +    y       p+ ++    +t+++++++y+l+++ +i   +   + e++ kd+++m 
      KOO24252.1  74 KFRDQMWQLAIHVSMTSLEAYILFYEGgetvswysN----YahlwvphPHAQNglcAQTPQSIQLLYVLQMAIWIDTCFGHRFLEERHKDYFVMY 164
                     7999************************99955551....45555644444445558999*****************999999999999****** PP

  TRAM_LAG1_CLN8  78 iHhiitlvllvlsyvrnlgrvglvvlllhelsdpflnlrkilsylkkk.sks..sklvlfngllfllsFfvcRlvllpylillsildvaklslst 169
                     +Hh++t++l+ +sy +n++++g++vl++h++sd+ l l ki++y++ +  k+  ++ + +  +l + +++ cR++l+ +l+ + ++   ++ +  
      KOO24252.1 165 LHHVVTIALVGVSYHYNYTKIGTIVLFVHDASDVPLDLLKIFNYCQLEgPKGlfLVELDY--VLTVYTWVHCRFYLFGLLLFRGVICAPREVALA 257
                     *********************************************666522233455555..89999********99999999999999866665 PP

  TRAM_LAG1_CLN8 170 ap..............................................................lwlpliflilllvLqllnlyWfyliv 197
                      +                                                              l++++   +ll +Lqll+++Wf +++
      KOO24252.1 258 PQaiahqvvpttceprytvcmagydkarksdgfgrghvkgallgdgsfdvrrsfdemgwgshecLPVYWEATALLSTLQLLHYVWFCMLI 347
                     559999********************************************************************************9987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (389 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       606  (0.0338); expected 358.6 (0.02)
Passed bias filter:                      400  (0.0223102); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.25s 00:00:00.74 Elapsed: 00:00:00.41
# Mc/sec: 2831.37
//
Query:       KOO24253.1  [L=351]
Description: aldo-keto reductase oxidoreductase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.8e-45  155.4   0.0    2.1e-45  155.2   0.0    1.0  1  Aldo_ket_red  Aldo/keto reductase family


Domain annotation for each model (and alignments):
>> Aldo_ket_red  Aldo/keto reductase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  155.2   0.0   1.2e-49   2.1e-45       2     293 ..      31     336 ..      30     337 .. 0.92

  Alignments for each domain:
  == domain 1  score: 155.2 bits;  conditional E-value: 1.2e-49
                   EEEE-SSS-ST.TS-HHHHHHHHHHHHHTT--EEE--TT-TTTHHHHHHHHHHHH.....-TTTGGG-EEEEEE--SSSTTSSSS-HHHHHHHHHHH CS
  Aldo_ket_red   2 lglGtwqlgskeeiskeealellrraleaGinffDtAevYgkgqseellGealkk.....srkkreeviiatKvdlrdaeiksglskenireslees 93 
                   +glGt +l  +   +++ a+e+l +a+ aG+nf+DtAe+Yg g se+   ++ ++      +  + e+ +atK     a+ +++  +e+++e++++s
    KOO24253.1  31 VGLGTLNLPLG-DEKPPAAAEALAAAIGAGCNFVDTAEAYGFGVSERQT-RWAAEqagvkIGCGKGELQVATKF----APVPWRPGAESVVEACRQS 121
                   68888888876.7888999*****************************9.55555566665666889*******....9999*************** PP

                   HHHHT-S-EEEEEE-S--TTS-..........HHHHHHHHHHHHHTTSEEEEEEES--HHHHHHH...HHTTT--EEEEE-B-BTT-HHHHTTHHHH CS
  Aldo_ket_red  94 lkrLgtdyvDllllHrpdpslp.........sieevldaleelvkeGkiraiGvSnfsveqleka...kkkkkvkivavqveynllreleeegllel 178
                    +rLg++++ l+++H pd   p         + ee ++ l+ +++eG++ +++v+n+   ++ ++   ++k+ ++++++q++++ll + +++ ++e 
    KOO24253.1 122 AERLGVKTIPLYQIHFPDIIQPfsalglsrrKDEEYWMGLARCYEEGLAANVAVCNYGPTMVTRVhefLAKRNIPLASNQINFSLLYRKASAATVER 218
                   *****************************************************************999***************************** PP

                   HHHTT-EEEEBSTTGGGTTGTTTSS---SSSCCC-------........TS-HHHHHHHHHHHHHHHHTT--HHHHHHHHHTTSTT-SEEEE--SSH CS
  Aldo_ket_red 179 ckkkgvpliaysplggGlltgkyqseedkedkeprkdlkrd........ertsknldaaeelselakehgvslaqlalryalsqpavgivipgasni 267
                   c++++vp+iay pl++Gll g+y+ ++ +  + +   +  +           ++ l ++ el+++a+ +g+++aq++l++++   ++ i+ipga+  
    KOO24253.1 219 CAELDVPVIAYFPLANGLLAGRYDADSMPR-FPKSLTM--KkyvvggteGYGAGYLPLLTELRRVAAARGKTVAQVSLNWCV--CKGAIPIPGARDG 310
                   ***********************9776654.3333334..3459999977778999**************************..************* PP

                   HHHHHHHGGGG----HHHHHHHHHHH CS
  Aldo_ket_red 268 eqlednldalelklseeevaeldell 293
                   + + dnl+++ ++l++ ev++l++++
    KOO24253.1 311 AMASDNLGSMGWRLDDAEVRALERAA 336
                   **********************9875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (351 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       244  (0.0136092); expected 358.6 (0.02)
Passed bias filter:                      225  (0.0125495); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.23s 00:00:00.66 Elapsed: 00:00:00.39
# Mc/sec: 2723.56
//
Query:       KOO24254.1  [L=321]
Description: hypothetical protein Ctob_003448 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    9.9e-10   38.5   0.0    2.1e-09   37.4   0.0    1.4  1  Myb_DNA-binding  Myb-like DNA-binding domain
    1.6e-07   31.5   0.0    2.3e-07   31.0   0.0    1.2  1  Myb_DNA-bind_6   Myb-like DNA-binding domain


Domain annotation for each model (and alignments):
>> Myb_DNA-binding  Myb-like DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.4   0.0   2.3e-13   2.1e-09       4      44 ..       4      50 ..       2      51 .. 0.90

  Alignments for each domain:
  == domain 1  score: 37.4 bits;  conditional E-value: 2.3e-13
                     SBHHHHHHHHHHHHHHTTCHHHHHHHHT..S....S-HHHHHHHHHH CS
  Myb_DNA-binding  4 WteeEdelLleavkkhGnrWkkIaerlg..g....Rtekqcrsrwrn 44
                     W++eEd lLl++++k G+rWk+Iae l   +    Rt+ ++r+r+++
       KOO24254.1  4 WSPEEDGLLLDLIQKSGKRWKLIAEALVdhTsgheRTPAMVRNRYLR 50
                     *************************8875536788**********86 PP

>> Myb_DNA-bind_6  Myb-like DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.0   0.0   2.5e-11   2.3e-07       1      43 [.       4      51 ..       4      65 .. 0.93

  Alignments for each domain:
  == domain 1  score: 31.0 bits;  conditional E-value: 2.5e-11
  Myb_DNA-bind_6  1 WteeEdeiLlklvekygndWknIaealn......rRtpkqcfdrwknkL 43
                    W++eEd +Ll+l +k g+ Wk+Iaeal        Rtp  +++r+++ +
      KOO24254.1  4 WSPEEDGLLLDLIQKSGKRWKLIAEALVdhtsghERTPAMVRNRYLR-I 51
                    ***************************559***************99.4 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (321 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       498  (0.0277762); expected 358.6 (0.02)
Passed bias filter:                      361  (0.020135); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.42u 0.22s 00:00:00.64 Elapsed: 00:00:00.38
# Mc/sec: 2542.39
//
Query:       KOO24255.1  [L=588]
Description: leucine rich repeat protein, partial [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.7e-13   48.6   9.4    1.1e-06   28.9   3.0    3.8  4  LRR_4      Leucine Rich repeats (2 copies)
    1.9e-11   43.6   8.3    6.5e-06   25.8   0.8    3.8  3  LRR_8      Leucine rich repeat
    2.1e-11   43.8   0.0      4e-11   43.0   0.0    1.4  1  RhoGAP     RhoGAP domain
    2.3e-08   33.7   0.1     0.0013   18.3   0.3    2.2  2  LRR_9      Leucine-rich repeat
     0.0011   18.9   7.8        1.1    9.5   0.1    5.1  5  LRR_6      Leucine Rich repeat
  ------ inclusion threshold ------
      0.019   15.5   4.5         12    6.9   0.0    5.0  4  LRR_1      Leucine Rich Repeat
       0.12   13.0   0.1       0.33   11.6   0.1    1.7  1  SelK_SelG  Selenoprotein SelK_SelG


Domain annotation for each model (and alignments):
>> LRR_4  Leucine Rich repeats (2 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.1     1e-05     0.026       3      33 ..      73     103 ..      71     107 .. 0.84
   2 !   28.9   3.0   4.3e-10   1.1e-06       2      38 ..     117     152 ..     116     156 .. 0.94
   3 ?   -1.1   0.0       1.1   2.9e+03      22      33 ..     160     171 ..     152     184 .. 0.77
   4 !    6.5   0.0    0.0048        12      19      33 ..     189     203 ..     161     206 .. 0.63

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 1e-05
                 --EEE--SS---E-S-HHH-TT--EEE-.-S CS
       LRR_4   3 LevLdLsnNqltdiplleklpnLkeLdLsgN 33 
                 L  +dLs+N l++i+ l+ +p Lk+L  s+N
  KOO24255.1  73 LVDIDLSDNELRSISELNRFPALKSLVASRN 103
                 6678**********************55777 PP

  == domain 2  score: 28.9 bits;  conditional E-value: 4.3e-10
                 S--EEE--SS---E-S-HHH-TT--EEE-.-S----- CS
       LRR_4   2 nLevLdLsnNqltdiplleklpnLkeLdLsgNnlitd 38 
                 +L+ LdLs+Nqlt +p l+ lp L+ L+Ls+N li+d
  KOO24255.1 117 RLTRLDLSGNQLTVVPTLKELPLLQILNLSRN-LIRD 152
                 7****************************999.8865 PP

  == domain 3  score: -1.1 bits;  conditional E-value: 1.1
                 -TT--EEE-.-S CS
       LRR_4  22 lpnLkeLdLsgN 33 
                 +  L+ Ld+s+N
  KOO24255.1 160 CQGLQALDVSEN 171
                 677888888888 PP

  == domain 4  score: 6.5 bits;  conditional E-value: 0.0048
                 HHH-TT--EEE-.-S CS
       LRR_4  19 leklpnLkeLdLsgN 33 
                 l++l+ L++L+Ls+ 
  KOO24255.1 189 LRGLKRLRVLNLSHT 203
                 558*********885 PP

>> LRR_8  Leucine rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.2   0.5   2.2e-05     0.058      26      61 .]      72     105 ..      50     105 .. 0.93
   2 !   25.8   0.8   2.5e-09   6.5e-06       2      60 ..     117     172 ..     116     173 .. 0.88
   3 !    6.7   0.0    0.0024       6.1      45      59 ..     189     203 ..     185     204 .. 0.65

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 2.2e-05
                 T--EEE--SS---GGGGGGGTT--S-.EEE--SS-- CS
       LRR_8  26 nLkvLdLsnNllttlspgafsgLpsLrsLdLsgNrL 61 
                 +L  +dLs+N+l+++s   +  +p+L+sL  s+N L
  KOO24255.1  72 ALVDIDLSDNELRSIS--ELNRFPALKSLVASRNAL 105
                 57889**********9..****************87 PP

  == domain 2  score: 25.8 bits;  conditional E-value: 2.5e-09
                 T-SEEE-TTS--SEE-TTSSTT-TT--EEE--SS---GGGGGGGTT--S-.EEE--SS- CS
       LRR_8   2 nLtsLdLsnNrltslddeaFkglsnLkvLdLsnNllttlspgafsgLpsLrsLdLsgNr 60 
                 +Lt+LdLs N+lt+++  + k l+ L++L+Ls+Nl++   ++ +  +  L+ Ld+s N 
  KOO24255.1 117 RLTRLDLSGNQLTVVP--TLKELPLLQILNLSRNLIRDG-WEEIGRCQGLQALDVSENA 172
                 7999999999999999..689999999999999999998.8999999999999999986 PP

  == domain 3  score: 6.7 bits;  conditional E-value: 0.0024
                 GTT--S-.EEE--SS CS
       LRR_8  45 fsgLpsLrsLdLsgN 59 
                 ++gL++Lr L+Ls++
  KOO24255.1 189 LRGLKRLRVLNLSHT 203
                 566777777777665 PP

>> RhoGAP  RhoGAP domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.0   0.0   1.6e-14     4e-11      42     149 ..     392     509 ..     353     513 .. 0.86

  Alignments for each domain:
  == domain 1  score: 43.0 bits;  conditional E-value: 1.6e-14
                 GGGCTTTTTSCHHHHHHHHHHHHHHSSSTTTTGGHHHHHHHHHTS........SSHHHHHHHHHHHHT.TS-HHHHHHHHHHHHHHHHHHH.THHHH-- CS
      RhoGAP  42 kavdsdleeedvhavaslLKrfLrelpepLltkelyeelieaaks........edeeerlealkelle.kLPkenrdtLryLlehLkrvae.nskenkM 130
                 ++ +s+l++ dv a +slL+ fL elp+pL+++el+  l+e++k+        +++eer+ +l+e++   L + +r +L++Ll +L++ a+ + +e+  
  KOO24255.1 392 DDDESELRDGDVRASCSLLRAFLIELPQPLIPNELFLPLLETTKAwaptvvehRQHEERAVRLEEIMMpYLAESHRILLEHLLCFLVNAARpYWAETPD 490
                 3444499*********************************966667777777799************99*********************966677777 PP

                 -HHHHHHHHHHHHHT-TSS CS
      RhoGAP 131 taknLaivfaPtLlrpkse 149
                   + La v+aP++lr +++
  KOO24255.1 491 YRQHLARVWAPCILRAPAR 509
                 7899***********9875 PP

>> LRR_9  Leucine-rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.3   0.3   5.1e-07    0.0013      46     123 ..      75     148 ..      57     154 .. 0.84
   2 !   12.9   0.0   2.2e-05     0.057     108     156 ..     188     236 ..     177     250 .. 0.89

  Alignments for each domain:
  == domain 1  score: 18.3 bits;  conditional E-value: 5.1e-07
       LRR_9  46 tidlsdndirkldgfPllkrlktlllnnnrivriaegleevlPnleelvltnnelqeladldPlaslkklellsllkn 123
                  idlsdn++r + ++  +  lk+l+ + n  +  ++g++ ++ +l+ l l++n+l+ + +   l +l+ l++l l +n
  KOO24255.1  75 DIDLSDNELRSISELNRFPALKSLVASRNA-LESGPGVALAVHRLTRLDLSGNQLTVVPT---LKELPLLQILNLSRN 148
                 59*********************9988886.578*******************9998877...555566666655555 PP

  == domain 2  score: 12.9 bits;  conditional E-value: 2.2e-05
       LRR_9 108 Plaslkklellsllknpvtnkkeyrlyviyklkqlrlldfrkvklkere 156
                  l  lk+l++l l ++p ++++ yr +v+   ++l lld   v ++er 
  KOO24255.1 188 VLRGLKRLRVLNLSHTPAASQRGYRGWVVANARKLELLDDAPVTEAERM 236
                 57889**********************************9999999985 PP

>> LRR_6  Leucine Rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.2   0.1      0.42   1.1e+03       5      15 ..      73      83 ..      70      85 .. 0.81
   2 !    9.5   0.1   0.00042       1.1       4      16 ..     117     129 ..     116     131 .. 0.90
   3 !    5.7   0.1    0.0068        17       5      17 ..     140     152 ..     136     153 .. 0.89
   4 ?    2.3   0.0     0.086   2.2e+02       2      15 ..     160     173 ..     159     174 .. 0.85
   5 ?    0.5   0.1      0.33   8.5e+02       4      12 ..     194     202 ..     192     204 .. 0.86

  Alignments for each domain:
  == domain 1  score: 0.2 bits;  conditional E-value: 0.42
       LRR_6  5 LteLdLsgNdI 15
                L   dLs+N++
  KOO24255.1 73 LVDIDLSDNEL 83
                5568*****97 PP

  == domain 2  score: 9.5 bits;  conditional E-value: 0.00042
       LRR_6   4 hLteLdLsgNdIg 16 
                  Lt LdLsgN+++
  KOO24255.1 117 RLTRLDLSGNQLT 129
                 69*********97 PP

  == domain 3  score: 5.7 bits;  conditional E-value: 0.0068
       LRR_6   5 LteLdLsgNdIgD 17 
                 L+ L+Ls N I D
  KOO24255.1 140 LQILNLSRNLIRD 152
                 99*********98 PP

  == domain 4  score: 2.3 bits;  conditional E-value: 0.086
       LRR_6   2 nthLteLdLsgNdI 15 
                 ++ L++Ld+s N +
  KOO24255.1 160 CQGLQALDVSENAF 173
                 6789*******976 PP

  == domain 5  score: 0.5 bits;  conditional E-value: 0.33
       LRR_6   4 hLteLdLsg 12 
                  L+ L+Ls+
  KOO24255.1 194 RLRVLNLSH 202
                 59******8 PP

>> LRR_1  Leucine Rich Repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.2   0.0      0.73   1.9e+03       5      19 ..      76      85 ..      72     104 .. 0.77
   2 ?    6.9   0.0    0.0048        12       1      13 [.     117     129 ..     117     137 .. 0.83
   3 ?    2.8   0.4      0.11   2.7e+02       2      12 ..     140     150 ..     139     174 .. 0.81
   4 ?    2.2   0.0      0.16   4.2e+02       1      11 [.     194     204 ..     194     208 .. 0.88

  Alignments for each domain:
  == domain 1  score: 0.2 bits;  conditional E-value: 0.73
       LRR_1  5 LdLsnnpllglppns 19
                +dLs+n l     +s
  KOO24255.1 76 IDLSDNEL-----RS 85
                899***99.....22 PP

  == domain 2  score: 6.9 bits;  conditional E-value: 0.0048
       LRR_1   1 nLrhLdLsnnpll 13 
                 +L++LdLs+n+l+
  KOO24255.1 117 RLTRLDLSGNQLT 129
                 69*********96 PP

  == domain 3  score: 2.8 bits;  conditional E-value: 0.11
       LRR_1   2 LrhLdLsnnpl 12 
                 L+ L+Ls+n +
  KOO24255.1 140 LQILNLSRNLI 150
                 899*****987 PP

  == domain 4  score: 2.2 bits;  conditional E-value: 0.16
       LRR_1   1 nLrhLdLsnnp 11 
                 +Lr+L+Ls+ p
  KOO24255.1 194 RLRVLNLSHTP 204
                 69*****9865 PP

>> SelK_SelG  Selenoprotein SelK_SelG
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.1   0.00013      0.33      20      81 ..     510     568 ..     505     571 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 0.00013
   SelK_SelG  20 iitdffwgivnfivlFfqtLlspdlsknsnssssskkrrggggggggGprRrmGrgggpspp 81 
                 i+++f  ++v+++++ + tLl+  +   +++  +++ ++g + g+g+G+   +G g+g+ ++
  KOO24255.1 510 IMSKFQGRVVDVMGMCVLTLLEARAGPGAHYGARDGDHYGASAGEGSGG---VGDGQGGTRC 568
                 667777789******************9999999999999999999999...9998887776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (588 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       316  (0.0176251); expected 358.6 (0.02)
Passed bias filter:                      257  (0.0143343); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.50u 0.25s 00:00:00.75 Elapsed: 00:00:00.38
# Mc/sec: 4590.78
//
Query:       KOO24256.1  [L=417]
Description: aminoglycoside phosphotransferase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    5.8e-10   39.5   0.4    3.6e-09   36.9   0.4    2.0  1  APH             Phosphotransferase enzyme family
    8.4e-07   28.6   0.0    4.5e-06   26.2   0.0    2.1  1  EcKinase        Ecdysteroid kinase
  ------ inclusion threshold ------
      0.044   13.4   0.0      0.071   12.7   0.0    1.2  1  Choline_kinase  Choline/ethanolamine kinase


Domain annotation for each model (and alignments):
>> APH  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.9   0.4     6e-13   3.6e-09      32     229 ..      51     349 ..      40     365 .. 0.59

  Alignments for each domain:
  == domain 1  score: 36.9 bits;  conditional E-value: 6e-13
                 S-HHHHHHHHHHHHHHHHTT-B--B-.CTTBS-EEETTE.....EEEEEE----EE-SSHHHHHHHHHHHHHHHHHHC..................... CS
         APH  32 raaeeirrevallrlLakagvpvPev.lagdtddeeigl.....lfalieyvpgrsllrklsaaqlpellealgefla..................... 103
                  ++  ++ e ++l++L+k+g+p+++v +a   +++ +g        + iey +g  +  ++s++   +++ ++ e+ +                     
  KOO24256.1  51 NTDVPASLESRVLAALQKQGIPAARVtIA---SEHLKGGyicdtFRVNIEYGGGLKAGAPDSDRPPTAIVKRACETGGdhavalalklyarewhfyesg 146
                 56677788999999999999988888445...3333333456766667899888888889999999999999999999666666666666666666666 PP

                 ..........................................................................CHHCH.-STTTB-SHHCHTCCHHHH CS
         APH 104 ..........................................................................alhqvdpaalpladflaqdlellrq 128
                                                                                            + ++d a+ ++ +  a+       
  KOO24256.1 147 laasvpvrvprylgslldeaqasttvgvlledlcvpgavlapeldeagvlltarhvaklhakfwnhpkltsgelGIRRHDDAWFKPGWSDAVAK----- 240
                 5555555555555555555555555555555555555555554444444333333333333222222222222222222222222223332211..... PP

                 HHCHHHCCCGCCTCCHHHHHHHHHHHHHHHH--S............................SS-EEEE-SS-SGGGEEEC..TTEEEEE---TT-EEE CS
         APH 129 lesatarllaselldlleeleeqvlaalaallpg............................elptvllHgDlhpgNllvdpddgrvtGviDfedaglg 199
                                         + ++++ ++                             + p +++HgD +pgN+ +  d+++  ++iD++++ +g
  KOO24256.1 241 -----------------------YWPQFEPKWRErngalpeeaytvgarivahygwvqtavsSAPNTFVHGDVKPGNMFMMGDGTP--AFIDWQYTAVG 314
                 .......................22222222222333333344444444444555555556689*****************66666..6********** PP

                 ECCHHHHCCH....HH.CSCHCCCHCHHHHHHHHC CS
         APH 200 pplyDlavll....rs.wtseldpeflaallraye 229
                    +Dl +++    +   + +l p + a++l+a +
  KOO24256.1 315 KGCADLCFMIiegyDIpTCAALEPKVKAEYLKALL 349
                 ******99986666444555555666666666555 PP

>> EcKinase  Ecdysteroid kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.2   0.0   7.5e-10   4.5e-06       4     262 ..      86     325 ..      84     350 .. 0.85

  Alignments for each domain:
  == domain 1  score: 26.2 bits;  conditional E-value: 7.5e-10
    EcKinase   4 nYasvllrvtlev....elkkdkskkekslivKtmpeeeekrellkslklfkkEiamYekvlPeleallreagdefklapkcykaeeeeeeevlvleDL 98 
                 +Y+   +rv++e+    +  +  s++  + ivK+  e+  +  +   lkl+ +E  +Ye+ l +   +      ++ l+  + +a++++    ++leDL
  KOO24256.1  86 GYICDTFRVNIEYggglKAGAPDSDRPPTAIVKRACETGGDHAVALALKLYAREWHFYESGLAASVPVR----VPRYLGSLLDEAQASTT-VGVLLEDL 179
                 5888899******998877778888999*******************************9987766555....34455555555555555.6799**** PP

    EcKinase  99 kekgyknadRlkgldlehlklvlkkLAkfHAaSlalkeekpevfkelkkglleedyvssalkeafeelleellkaalealreelpelekea.ekleklk 196
                 +  g ++a+    ld + + l+ + +Ak+HA    +++       +l++g l  +  ++    +f++  + ++ +    ++ +++e +    e+++ + 
  KOO24256.1 180 CVPGAVLAPE---LDEAGVLLTARHVAKLHAKF--WNHP------KLTSGELGIRRHDD---AWFKPGWSDAVAKYWPQFEPKWRERNGALpEEAYTVG 264
                 *********9...*****************953..3333......45777777776666...5999999999999999998888888666699999*** PP

    EcKinase 197 enlferllelveekeeefnvlnHGDlwvnNimfkydeegepedvilvDFQlsrygSpalDLlyfly 262
                  ++++++  + +  ++  n+++HGD+   N+ +  d +       ++D+Q+  +g    DL+++++
  KOO24256.1 265 ARIVAHYGWVQTAVSSAPNTFVHGDVKPGNMFMMGDGT-----PAFIDWQYTAVGKGCADLCFMII 325
                 *******99999******************99988866.....49******************997 PP

>> Choline_kinase  Choline/ethanolamine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   1.2e-05     0.071     143     189 ..     281     326 ..     254     335 .. 0.88

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 1.2e-05
                     G-EEEE-S--SGGGEEE.-CTTEEEE--GTT-EEEEHHHHHHHHHHH CS
  Choline_kinase 143 spvvfcHnDlqegNillnkeekklvlIDFEYagynyrgfDlanhfiE 189
                      p +f H D+ +gN+ +   +++  +ID+ Y ++     Dl+ ++iE
      KOO24256.1 281 APNTFVHGDVKPGNMFM-MGDGTPAFIDWQYTAVGKGCADLCFMIIE 326
                     4578************9.9999************9999999988887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (417 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       367  (0.0204696); expected 358.6 (0.02)
Passed bias filter:                      355  (0.0198003); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.51u 0.22s 00:00:00.73 Elapsed: 00:00:00.38
# Mc/sec: 3256.03
//
Query:       KOO24257.1  [L=476]
Description: hypothetical protein Ctob_003450 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
     0.0086   15.2   0.6      0.016   14.3   0.6    1.4  1  IFRD            Interferon-related developmental regulator (I
  ------ inclusion threshold ------
       0.17   12.0   0.8        9.3    6.4   0.0    3.3  3  F_actin_bind    F-actin binding
       0.38   10.7   0.0       0.38   10.7   0.0    3.0  3  Pox_A_type_inc  Viral A-type inclusion protein repeat
       0.98   10.1   7.5          1   10.0   5.2    2.2  2  HIP1_clath_bdg  Clathrin-binding domain of Huntingtin-interac


Domain annotation for each model (and alignments):
>> IFRD  Interferon-related developmental regulator (IFRD)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.3   0.6   3.6e-06     0.016     184     235 ..     189     239 ..     164     245 .. 0.81

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 3.6e-06
        IFRD 184 aadsas.kalvtaalsawglLltllpssklnkkleedleealealvelLdssd 235
                 a+d+ + ++l+  al+ w ++l++++s+ l++k+e   ++++++l++lLds +
  KOO24257.1 189 AQDVDGrNELLRLALNRWNMVLSTVKSEALREKAEV--QDTAKKLSALLDSMQ 239
                 44555545599**********************999..999*********965 PP

>> F_actin_bind  F-actin binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.5   0.0      0.14   6.4e+02      48      61 ..     156     170 ..     124     189 .. 0.80
   2 ?    0.7   0.1      0.13   5.6e+02      10      56 ..     226     245 ..     193     274 .. 0.52
   3 ?    6.4   0.0    0.0021       9.3      43      69 ..     347     373 ..     338     391 .. 0.88

  Alignments for each domain:
  == domain 1  score: 0.5 bits;  conditional E-value: 0.14
  F_actin_bind  48 sCsgyvdsipp.hak 61 
                   +C +y+d+++  ha+
    KOO24257.1 156 ECKTYFDEVAVlHAR 170
                   699999998888998 PP

  == domain 2  score: 0.7 bits;  conditional E-value: 0.13
  F_actin_bind  10 elvelleaalsnlkesvsssqesaqllqlldkvenlhssCsgyvdsi 56 
                   + ++ l+a l+                             +++   i
    KOO24257.1 226 DTAKKLSALLDS---------------------------MQQHSRAI 245
                   222222222222...........................22222222 PP

  == domain 3  score: 6.4 bits;  conditional E-value: 0.0021
  F_actin_bind  43 enlhssCsgyvdsipphakFaFrells 69 
                     l ++C  +++ +p+ ak +Fr++l 
    KOO24257.1 347 AHLIEQCRWHASRLPEGAKWRFRQALE 373
                   67899*******************986 PP

>> Pox_A_type_inc  Viral A-type inclusion protein repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   3.1       1.4   6.5e+03       3      10 ..     142     149 ..     140     150 .. 0.83
   2 ?   10.7   0.0   8.5e-05      0.38       7      19 ..     168     180 ..     163     180 .. 0.83
   3 ?   -2.3   0.1       1.1   4.9e+03      13      19 ..     372     378 ..     372     378 .. 0.85

  Alignments for each domain:
  == domain 1  score: -2.7 bits;  conditional E-value: 1.4
  Pox_A_type_inc   3 msrlRsRI 10 
                     ++r R+RI
      KOO24257.1 142 IERRRRRI 149
                     8999**99 PP

  == domain 2  score: 10.7 bits;  conditional E-value: 8.5e-05
  Pox_A_type_inc   7 RsRIsDLErqLse 19 
                       RIsDLE qL++
      KOO24257.1 168 HARISDLEEQLAD 180
                     56*********97 PP

  == domain 3  score: -2.3 bits;  conditional E-value: 1.1
  Pox_A_type_inc  13 LErqLse 19 
                     LE+qL +
      KOO24257.1 372 LEQQLHD 378
                     9****65 PP

>> HIP1_clath_bdg  Clathrin-binding domain of Huntingtin-interacting protein 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.0       2.5   1.1e+04      17      33 ..     134     150 ..     129     154 .. 0.74
   2 ?   10.0   5.2   0.00023         1      23      93 ..     179     249 ..     168     251 .. 0.94

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 2.5
  HIP1_clath_bdg  17 varqaqeeverekkele 33 
                     +   ++e++er +++++
      KOO24257.1 134 AVYVNHEDIERRRRRID 150
                     55668999999999876 PP

  == domain 2  score: 10.0 bits;  conditional E-value: 0.00023
  HIP1_clath_bdg  23 eeverekkeleeelerlkeeaerkleeqkeelekLkreleakraelarlkssLesseqsgeqlssqlaaLq 93 
                      + +r+k+el+++++  +e  +  l+  ++ l ++k+e  +++ae++   + L+    s +q+s  +++Lq
      KOO24257.1 179 ADWHRTKQELAQDVDGRNELLRLALNRWNMVLSTVKSEALREKAEVQDTAKKLSALLDSMQQHSRAIDELQ 249
                     6889*****************************************************************99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (476 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       927  (0.0517039); expected 358.6 (0.02)
Passed bias filter:                      566  (0.031569); expected 358.6 (0.02)
Passed Vit filter:                        68  (0.00379274); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.57u 0.26s 00:00:00.83 Elapsed: 00:00:00.42
# Mc/sec: 3399.08
//
Query:       KOO24258.1  [L=161]
Description: thioredoxin [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.4e-22   78.4   0.0    4.4e-22   78.0   0.0    1.2  1  Thioredoxin    Thioredoxin
    3.3e-05   24.1   0.0     0.0022   18.3   0.0    2.1  2  Thioredoxin_8  Thioredoxin-like
    9.3e-05   22.8   0.0    0.00086   19.7   0.0    2.1  1  Thioredoxin_2  Thioredoxin-like domain
    0.00053   19.9   0.0    0.00092   19.2   0.0    1.4  1  HyaE           Hydrogenase-1 expression protein HyaE
     0.0011   18.8   0.0     0.0015   18.3   0.0    1.2  1  Thioredoxin_9  Thioredoxin
     0.0038   17.4   0.0     0.0072   16.5   0.0    1.5  1  Thioredoxin_7  Thioredoxin-like
     0.0058   16.5   0.0     0.0074   16.2   0.0    1.3  1  AhpC-TSA       AhpC/TSA family
  ------ inclusion threshold ------
      0.058   13.2   0.0      0.077   12.8   0.0    1.1  1  TraF           F plasmid transfer operon protein
      0.087   12.9   0.0       0.12   12.4   0.0    1.3  1  Thioredoxin_3  Thioredoxin domain
       0.12   12.1   0.0       0.29   10.9   0.0    1.4  1  Redoxin        Redoxin


Domain annotation for each model (and alignments):
>> Thioredoxin  Thioredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   78.0   0.0   2.4e-25   4.4e-22      11      99 ..      62     151 ..      53     155 .. 0.90

  Alignments for each domain:
  == domain 1  score: 78.0 bits;  conditional E-value: 2.4e-25
                  HHHHTTTSSEEEEEEE-TTSHHHHCHHHHHHHHHHHCTTTSEEEEEETTTSHHHHHHTT-SSSSEEEEEETTEEEEEEESS.-HHHHHHH CS
  Thioredoxin  11 eeevakekklvlveFyApwCghCkalaPeleklaeelkdkvklakvdvdenedlakkyevegiPtlklfkngkevkkyega.rekeklaa 99 
                  ++e+a++++++l++ +A+wCg+Ck+++P+l kla +l ++v+++k+d d++ +l +++ v+++Ptl+++++gkev+++eg  + + +l+a
   KOO24258.1  62 RTEMADARTPLLIDVFATWCGPCKMITPMLSKLAATLGERVRVVKLDSDKEGELSSELRVSALPTLIFLRDGKEVHRLEGVpNGQGALEA 151
                  67888999**********************************************************************998455555555 PP

>> Thioredoxin_8  Thioredoxin-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.3   0.0   1.2e-06    0.0022       4      46 ..      72     112 ..      69     116 .. 0.91
   2 !    8.1   0.0    0.0019       3.3      64      94 ..     105     135 ..     102     136 .. 0.87

  Alignments for each domain:
  == domain 1  score: 18.3 bits;  conditional E-value: 1.2e-06
                    EEEEE--SSSHHHHHHHHHHHHHHHHHHHTTSEEEEEEE-SS- CS
  Thioredoxin_8   4 vlLyfgaswcppckaftpklkelyeklkkkkkveivyvsldkk 46 
                    +l+ ++a+wc pck +tp l++l  +l    +v++v + +dk+
     KOO24258.1  72 LLIDVFATWCGPCKMITPMLSKLAATLG--ERVRVVKLDSDKE 112
                    68899**********************9..9******999986 PP

  == domain 2  score: 8.1 bits;  conditional E-value: 0.0019
                    .EE-TT-HHHHTT-S--TT-SEEEEE-TT-B CS
  Thioredoxin_8  64 vpfddkkrnklkkkynvkaiPtlvvldknge 94 
                    v  d++k  +l ++++v+a+Ptl+ l+  +e
     KOO24258.1 105 VKLDSDKEGELSSELRVSALPTLIFLRDGKE 135
                    667889999***************9987665 PP

>> Thioredoxin_2  Thioredoxin-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.7   0.0   4.8e-07   0.00086       6      99 ..      70     142 ..      66     152 .. 0.78

  Alignments for each domain:
  == domain 1  score: 19.7 bits;  conditional E-value: 4.8e-07
  Thioredoxin_2   6 kpvlvvftdpdCpyCkklkkelkelddvtvrvllfplkpsfepkavaiwcakekkkafkdieenvelarkygvrgtPt.ivfldgkeivarlpGy 99 
                     p+l+++ +++C+ Ck +   l++l     +     l++     +v+++ +ke            el+ +++v+++Pt i++ dgk +v rl+G 
     KOO24258.1  70 TPLLIDVFATWCGPCKMITPMLSKL---AAT-----LGER--VRVVKLDSDKE-----------GELSSELRVSALPTlIFLRDGK-EVHRLEGV 142
                    689999999********99999999...444.....6666..44555555554...........57************55589999.99999996 PP

>> HyaE  Hydrogenase-1 expression protein HyaE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.2   0.0   5.1e-07   0.00092      58     102 ..      99     142 ..      85     146 .. 0.80

  Alignments for each domain:
  == domain 1  score: 19.2 bits;  conditional E-value: 5.1e-07
                 TTS-EEEEEE.THHHHHHHHHCCT-TSSSEEEEEETTEEEEEEESS CS
        HyaE  58 pnalraavva.dreqeealaerfgvlktPsllflrdgeylgvlaki 102
                  ++    vv+ d+++e +l ++ +v+  P+l+flrdg+ +  l+++
  KOO24258.1  99 GERV--RVVKlDSDKEGELSSELRVSALPTLIFLRDGKEVHRLEGV 142
                 4444..455557**************************99999887 PP

>> Thioredoxin_9  Thioredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.3   0.0   8.4e-07    0.0015      40     111 ..      69     136 ..      52     151 .. 0.71

  Alignments for each domain:
  == domain 1  score: 18.3 bits;  conditional E-value: 8.4e-07
                    -S-EEEEEE--TT-HHHHHHHHHHHHHHHH-TTEEEEEE-HHHHHHHTTTTTT-SS--SSEEEEE-TT--EE CS
  Thioredoxin_9  40 ekklkilvltedwCgDaavnvPvlakiaelnpnievkillrdenlelmdqyltngaraiPtliildeegeel 111
                    +++l i v+ + wCg + ++ P+l k+a +  +  v+++  d+++e   + ++    a Ptli+l ++ e +
     KOO24258.1  69 RTPLLIDVF-ATWCGPCKMITPMLSKLAATL-GERVRVVKLDSDKEGELS-SELRVSALPTLIFLRDGKE-V 136
                    555555555.47****************988.777787777777765432.234679*******976543.3 PP

>> Thioredoxin_7  Thioredoxin-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.0     4e-06    0.0072      11      81 ..      63     130 ..      59     132 .. 0.75

  Alignments for each domain:
  == domain 1  score: 16.5 bits;  conditional E-value: 4e-06
                    HHHHHHT--EEEEE--TT-HHHHHHHHHHHH-HHHHH.HHHT-EEEEESS--S-GGG.-TT---SSEEEEE CS
  Thioredoxin_7  11 akaaergkpvlvffgaswcftCqalerdflsdeevkaalaekfvllrvdvterdanileldeqgvPvvafl 81 
                     ++a    p+l+++ a+wc++C+ +  ++ +    +a l e++ ++++d + + +   el+ + +P+++fl
     KOO24258.1  63 TEMADARTPLLIDVFATWCGPCKMITPMLSKL---AATLGERVRVVKLDSDKEGELSSELRVSALPTLIFL 130
                    57899999***************998776544...444779999999998766653334445668888887 PP

>> AhpC-TSA  AhpC/TSA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.0   4.1e-06    0.0074      20     102 ..      65     144 ..      36     156 .. 0.85

  Alignments for each domain:
  == domain 1  score: 16.2 bits;  conditional E-value: 4.1e-06
                 CHHHTTSEEEEEEESTST-CCHHHHHHHHHHCHHHCCCTTEEEEEEESSSCHHHHHHHHH-H.SSEEEE-TTSHHHHHTT-EE CS
    AhpC-TSA  20 lsdykgkpvvlffypkdwcpvCttelpalaklyeefkergvevigvsvdspeshkkfiekeslnfpllsDeegkvakaygvlk 102
                 ++d +  p+++ ++++ wc +C+   p l+kl+  + e  v v+ + +d++ ++ +  +   l+  +++   ++v +  gv++
  KOO24258.1  65 MADART-PLLIDVFAT-WCGPCKMITPMLSKLAATLGE-RVRVVKLDSDKEGELSSELRVSALPTLIFLRDGKEVHRLEGVPN 144
                 455555.99*******.*******************95.699*******9999999999999888888888888877777765 PP

>> TraF  F plasmid transfer operon protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0   4.3e-05     0.077     136     203 ..      76     134 ..      67     154 .. 0.86

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 4.3e-05
        TraF 136 FyrgkcpyceaqapilqafadkyglevraVsvdgrplpelpnarvdkgqaarlgvkrtPalvlvdpks 203
                 +++  c+ c++  p+l+++a + g  vr+V++d     el++         +l v+  P+l++ +  +
  KOO24258.1  76 VFATWCGPCKMITPMLSKLAATLGERVRVVKLDSDKEGELSS---------ELRVSALPTLIFLRDGK 134
                 67778******************************9988999.........9*********9998874 PP

>> Thioredoxin_3  Thioredoxin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0     7e-05      0.12       3      69 ..      74     146 ..      72     154 .. 0.78

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 7e-05
                    EEEESSSSTTCHHHHHHHHHHCHCCTCECEEECC..TTHHHH.HHCT-SSSSEE.EC.T..TCEEEESS---CC CS
  Thioredoxin_3   3 ikvlgpgCakCpklekavkeaaaekgikaevekv..tdfeei.ekygVmsvPal.vi.d..gkvvvsGkvpsee 69 
                    i v+ + C  C+ ++ ++ ++aa++g  + v+k    +  e+ ++ +V + P+l ++ d  ++ + +G vp+++
     KOO24258.1  74 IDVFATWCGPCKMITPMLSKLAATLGERVRVVKLdsDKEGELsSELRVSALPTLiFLrDgkEVHRLEG-VPNGQ 146
                    889999*******************999988887646677889***********64435333445578.77776 PP

>> Redoxin  Redoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   0.00016      0.29      30      61 ..      71     101 ..      58     118 .. 0.79

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00016
                 EEEEEEESTTT-HHHHHTHHHHHTHHHHHHCS CS
     Redoxin  30 kvvvnfvpgafcPtCsaehpyleklaellkek 61 
                 ++++ ++++ +c++C+  +p l kla+ l+e+
  KOO24258.1  71 PLLIDVFAT-WCGPCKMITPMLSKLAATLGER 101
                 467777888.*********9*****9887776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (161 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       396  (0.0220871); expected 358.6 (0.02)
Passed bias filter:                      375  (0.0209158); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.39u 0.26s 00:00:00.65 Elapsed: 00:00:00.41
# Mc/sec: 1188.42
//
Query:       KOO24259.1  [L=224]
Description: hypothetical protein Ctob_003455 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (224 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       552  (0.0307881); expected 358.6 (0.02)
Passed bias filter:                      269  (0.0150036); expected 358.6 (0.02)
Passed Vit filter:                         8  (0.000446204); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.43u 0.24s 00:00:00.67 Elapsed: 00:00:00.42
# Mc/sec: 1610.04
//
Query:       KOO24260.1  [L=230]
Description: hypothetical protein Ctob_003457 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
  ------ inclusion threshold ------
       0.37   10.3  17.5       0.51    9.9  17.5    1.2  1  HAUS-augmin3  HAUS augmin-like complex subunit 3
        4.7    5.0   7.2        6.6    4.5   7.2    1.3  1  V_ATPase_I    V-type ATPase 116kDa subunit family
        9.5    6.1  12.5         11    5.9  12.5    1.0  1  TFIIA         Transcription factor IIA, alpha/beta subunit


Domain annotation for each model (and alignments):
>> HAUS-augmin3  HAUS augmin-like complex subunit 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9  17.5   8.6e-05      0.51      64     166 ..     104     207 ..      88     227 .. 0.84

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 8.6e-05
  HAUS-augmin3  64 edvellevileeeeesleaLeqelqeLqkekal.klkrlnkLqvqaaslqqelrkleeeekeakkklkeaqeelraenaetnavLqqlteeakqlae 159
                    d+  l + ++e+e+s+++ e+  ++L +e ++  +++l  L++qa s+++  +++  e+ +a+ + ++a e+ +a+ ae++++L++ ++e +    
    KOO24260.1 104 ADSLVLAERVAELESSKRQMEEHSEALLRELQSvREQQLTHLNAQARSAAEAAERRRHEQAAAAAERERAAEAWAARVAELQEALTRTSKEHEAAKA 200
                   45555667788888888888888888877766525789999************************************************99888888 PP

  HAUS-augmin3 160 yfeeaek 166
                    ++e+++
    KOO24260.1 201 AHRESDE 207
                   8888776 PP

>> V_ATPase_I  V-type ATPase 116kDa subunit family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.5   7.2    0.0011       6.6      60     137 ..      95     173 ..      76     228 .. 0.65

  Alignments for each domain:
  == domain 1  score: 4.5 bits;  conditional E-value: 0.0011
  V_ATPase_I  60 eesleapeekeldeleeelekleeelkelnenleklkkelnelvelkavlekakefleee.eeeeeeeeseeeeeekee 137
                 +++l+a+++++   l e++ +le++ ++++e++e+l +el+++ e++    +a++  ++e +e++++e++ +++e++++
  KOO24260.1  95 AAELRASRQADSLVLAERVAELESSKRQMEEHSEALLRELQSVREQQLTHLNAQARSAAEaAERRRHEQAAAAAERERA 173
                 5566677777777889999999999999999999999999999988877766665554442222222222111111111 PP

>> TFIIA  Transcription factor IIA, alpha/beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.9  12.5    0.0019        11     132     286 ..      71     205 ..      33     229 .. 0.32

  Alignments for each domain:
  == domain 1  score: 5.9 bits;  conditional E-value: 0.0019
       TFIIA 132 vtlqtasgqlykvnvqasgaqqiaaqplqqvvqqsqgsaaqssvaalqaqsqqaqalaepqqq.lekqqqqqqqqqqqqqqqqvqqqqqeesqqaqqas 229
                 +t + as+++   + q  +a++ aa+ l  +  q+ + + ++ va+l+++++q++  +e   + l   q+ ++qq +++++q+ +  + +e ++++qa 
  KOO24260.1  71 WTSSAASPTAPPLSPQLVAASRQAAAELRAS-RQADSLVLAERVAELESSKRQMEEHSEALLReL---QSVREQQLTHLNAQARSAAEAAERRRHEQA- 164
                 2233333222222222222222222222222.223444444455555544444333333333311...122333333333332221111111111111. PP

       TFIIA 230 qeqvagsqvessqtdgaedaleeespv..legelsaeeeagaqkeelsreeidri.reea 286
                                  + a+e e  +  + +++++ +ea +++  ++++e+ +  + e+
  KOO24260.1 165 -----------------AAAAERERAAeaWAARVAELQEALTRT--SKEHEAAKAaHRES 205
                 .................111111111111333333333222221..11111111111111 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (230 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2638  (0.147136); expected 358.6 (0.02)
Passed bias filter:                      654  (0.0364772); expected 358.6 (0.02)
Passed Vit filter:                        82  (0.0045736); expected 17.9 (0.001)
Passed Fwd filter:                        16  (0.000892409); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.57u 0.28s 00:00:00.85 Elapsed: 00:00:00.44
# Mc/sec: 1582.25
//
Query:       KOO24261.1  [L=1304]
Description: coiled-coil and c2 domain-containing protein 2a [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      9e-22   77.6   0.0    1.9e-21   76.6   0.0    1.6  1  CC2D2AN-C2  CC2D2A N-terminal C2 domain
    7.4e-05   23.0   0.0    0.00085   19.6   0.0    2.4  2  C2          C2 domain


Domain annotation for each model (and alignments):
>> CC2D2AN-C2  CC2D2A N-terminal C2 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   76.6   0.0   2.1e-25   1.9e-21       1     168 [.     334     502 ..     334     509 .. 0.87

  Alignments for each domain:
  == domain 1  score: 76.6 bits;  conditional E-value: 2.1e-25
  CC2D2AN-C2   1 pgepilepelsadgeitpdskcpraEqqRReevqklkffvkvfvngkeVsstravsL.esdFkvsfneifsirlvrwPesikleiyeks.gtlskslla 97 
                 p e +l p+ +++++ +  + +p +E++R e++++++++  ++v+g+ V +t++  +   dF ++fn++++++ ++ P++++l++++++ + + +sll+
  KOO24261.1 334 PDERTLVPVYTEESPASDYVLLPLDERRRLEAASRVELYAVLLVDGRVVGQTESTLIhPLDFCCRFNTCVQLQMLQAPRTLSLQLWQRKwSGFADSLLS 432
                 67889999999*9****************************************9888889****************************885599***** PP

  CC2D2AN-C2  98 evfipvpgssttsgeaarleeleFss.epkvtskhegvGsgvpfs...kesesaslltsGkvsvsvsWavdedga 168
                 evf++vp   + s  a+r+e+++F s +p  ++k+    ++ +     + +    + ++G+v vsv+Wa+++  a
  KOO24261.1 433 EVFLAVPA--AASPAAPRWEQYSFASeRPFGETKR---APDEKPRhegEVALHPIRCLCGQVNVSVAWATPPARA 502
                 ********..88888999********444433333...3444444667777788899************987665 PP

>> C2  C2 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.4   0.0      0.09     8e+02      20      89 ..     367     439 ..     354     451 .. 0.76
   2 !   19.6   0.0   9.5e-08   0.00085       2      60 ..     726     798 ..     725     855 .. 0.70

  Alignments for each domain:
  == domain 1  score: 0.4 bits;  conditional E-value: 0.09
                 SSCEEEEEEEEECEEEEEE-.SC..SSSSSSEEEEEEEEEESCHTTSEEEEEEEEECSS.STEEEEEEEEEEGH CS
          C2  20 gssdpyvkvsldgkqkakTr.vi..knslnPvWnekftfevaeleeakLeveVfdndrl.skddfiGkveipls 89 
                 + ++ y+++ +dg ++++T+ +   +  +  ++n  +++++ + + ++L ++++ ++   + d+++ +v + + 
  KOO24261.1 367 SRVELYAVLLVDGRVVGQTEsTLihPLDFCCRFNTCVQLQMLQ-APRTLSLQLWQRKWSgFADSLLSEVFLAVP 439
                 457889999999999***9953334666778999999998888.999999999997665477888888777665 PP

  == domain 2  score: 19.6 bits;  conditional E-value: 9.5e-08
                 EEEEEEEEEESSSSSST....TSSCEEEEEEEEECEEEEEE-SCSSSSSSEEEEEEEEEESC............H CS
          C2   2 klevtvieAknLpnkdk....kgssdpyvkvsldgkqkakTrviknslnPvWnekftfevae............l 60 
                 ++ev v ++ +Lp + +     + +  +v++ + + ++ +T+v+  s +P +n++f+f+++             +
  KOO24261.1 726 TVEVAVQQGVDLPIRAGsaadANRTRLFVEIAF-QGRTMRTDVKAGS-SPMFNQRFSFPLTLpagetfdqsavlN 798
                 57899*******9994444444559********.********87777.9*********99875566555555444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1304 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       704  (0.039266); expected 358.6 (0.02)
Passed bias filter:                      474  (0.0264376); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.83u 0.29s 00:00:01.11 Elapsed: 00:00:00.48
# Mc/sec: 8178.49
//
Query:       KOO24262.1  [L=403]
Description: octopine dehydrogenase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.4e-22   80.4   0.0    1.9e-22   80.0   0.0    1.2  1  Octopine_DH     NAD/NADP octopine/nopaline dehydrogenase, alp
    0.00029   20.9   0.0    0.00067   19.7   0.0    1.6  2  NAD_Gly3P_dh_N  NAD-dependent glycerol-3-phosphate dehydrogen
  ------ inclusion threshold ------
      0.034   13.8   0.0      0.055   13.1   0.0    1.3  1  ApbA            Ketopantoate reductase PanE/ApbA
      0.084   13.0   0.1       0.17   12.0   0.1    1.4  1  Sld3_N          Sld3 N-terminal domain
      0.097   13.3   0.0       0.29   11.7   0.0    1.8  1  F420_oxidored   NADP oxidoreductase coenzyme F420-dependent


Domain annotation for each model (and alignments):
>> Octopine_DH  NAD/NADP octopine/nopaline dehydrogenase, alpha-helical domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   80.0   0.0   5.3e-26   1.9e-22       3     149 ..     188     357 ..     186     358 .. 0.90

  Alignments for each domain:
  == domain 1  score: 80.0 bits;  conditional E-value: 5.3e-26
  Octopine_DH   3 envleitLsnvNpiiHppaallnl............srieetegdfslyyegitpsvaevlealdeErlaiakal........gl.evlplaerllda 79 
                  ++++++tL++ Np +H p++l++l            ++++      +l y ++   +a++l a d E++aiak+l        +l +  +++  ++++
   KOO24262.1 188 TDFIASTLWPNNPSLH-PPILYGLfkdwdgktpydpATLP------TLIYADLRTDSAKTLVAEDLELCAIAKKLsemypnnrHLkSNFSMHHCVNEN 278
                  69**************.********999966555554444......589999************************999998855445589999**** PP

  Octopine_DH  80 YgdeikdksslaevirtneaykgikaPmsl.d........hRyltEDipygLvvlkslAellgvptpvidsvielasai 149
                  Y ++i+ k +  + i tn+a+++ k P ++ +        h ++  D+p+gL+ ++++A+++gv+tp+id++i + +++
   KOO24262.1 279 YLEQITCKWDAVSSIITNKAFSKHKIPYTQvEggvvptlqHKFFETDLPFGLCTFVDIARMIGVETPTIDAMICWNQKL 357
                  ******8888999999*************7579*******************************************986 PP

>> NAD_Gly3P_dh_N  NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.7   0.0   1.9e-07   0.00067       2      97 ..       3     103 ..       2     118 .. 0.86
   2 ?   -3.0   0.0       1.8   6.4e+03      30      53 ..     261     285 ..     250     296 .. 0.68

  Alignments for each domain:
  == domain 1  score: 19.7 bits;  conditional E-value: 1.9e-07
                     EEEE--SHHHHHHHHHHHTTT--EEEE-S-H..HHHHHHHHHSSBTTTBTT.----TTEE.EES-HHHHHTT--EEEE-.--HHHHHHHHHHHCC CS
  NAD_Gly3P_dh_N   2 iavlGaGswGtalAkvlaenghevrlwvree..elieeineehenvkyLpg.iklpenlv.attdlaealkgadiivlv.vPsqalrevlkklkg 91 
                     ++v+G+G+    +A++ a++gh+v + +r++    +++i   + +  y +g +++ +++  +t+d ae++ ++d+i+++ +P ++  evl+k+k+
      KOO24262.1   3 VTVVGGGNSTPIFAALAADAGHTVAILTRRPkdWDANDIGFVNDDLGYCDGkTEFRTKIAlVTADPAECIPQSDMIFIAgLPIHHNPEVLRKIKP 97 
                     89*****************************4335678888899999**995789999972578************98669************** PP

                     C--TT- CS
  NAD_Gly3P_dh_N  92 llkkka 97 
                     +++  +
      KOO24262.1  98 HMDMTK 103
                     995443 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 1.8
                     S-HHHHHHHHHHSS.BTTTBTT--- CS
  NAD_Gly3P_dh_N  30 reeelieeineehe.nvkyLpgikl 53 
                     ++++l  +++ +h+ n++yL++i++
      KOO24262.1 261 NNRHLKSNFSMHHCvNENYLEQITC 285
                     4555555555555338888888876 PP

>> ApbA  Ketopantoate reductase PanE/ApbA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.0   1.5e-05     0.055       2      98 ..       4     105 ..       3     107 .. 0.84

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 1.5e-05
                 EEES-SHHHHHHHHHHHHHTHCEEEE-SCHHHHHHHHHCEEEEETT.....CEEEEEECEEECCH.SCCCCS-ESEEEE-.SSGGGHHHHHHHHGGGEC CS
        ApbA   2 ailGaGaiGsllaakLakagadvtlilrsrrlealkknGlrltseg.....geeilrppealsae.ekselepidlvivt.vKayqteealeeikplld 93 
                 +++G G    ++aa  a ag++v +++r++  +++  n++ +  ++     g++ +r++ al ++ + + + + d+++++ ++  ++ e+l++ikp++d
  KOO24262.1   4 TVVGGGNSTPIFAALAADAGHTVAILTRRP--KDWDANDIGFVNDDlgycdGKTEFRTKIALVTAdPAECIPQSDMIFIAgLPIHHNPEVLRKIKPHMD 100
                 677777766666665555************..78888888888888889999999999999999998899999**9999769****************9 PP

                 TCEEE CS
        ApbA  94 pntvv 98 
                  + +v
  KOO24262.1 101 MTKHV 105
                 98877 PP

>> Sld3_N  Sld3 N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.1   4.6e-05      0.17      14      89 ..     232     308 ..     224     326 .. 0.88

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 4.6e-05
                 -B-STT-EEEEGGGST.TTTS-STTTS-TT-EEEEE.-SS-EEEEEE-STTEEEEEEBSS--TTT------S-S--- CS
      Sld3_N  14 ilsldspklleseelp.kevlselenspislKHllkdaddkyflLErYgkeywvlWevvsvdvteleeeqteleksk 89 
                 +l++ds+k l +e+l+   + ++l++     +Hl  + + ++++ E+Y +++  +W+ vs  +t++++ +++++ ++
  KOO24262.1 232 DLRTDSAKTLVAEDLElCAIAKKLSEMYPNNRHLKSNFSMHHCVNENYLEQITCKWDAVSSIITNKAFSKHKIPYTQ 308
                 5789999999999999667999999999999******999******************9999999999998877655 PP

>> F420_oxidored  NADP oxidoreductase coenzyme F420-dependent
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   8.2e-05      0.29       2      85 ..       3      99 ..       2     112 .. 0.81

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 8.2e-05
                   EEEETTSHHHHHHHHHHHHTTS-GGCEEEEEESSCCCHHHHHHHHC...................-EEECECHHHHHHH-SEEEE-.S-HHHHHHHHH CS
  F420_oxidored  2 igiiGaGnmgealasgllaagaqpheivvansrnpekaeelaeelg...................vkvtavdneeaaeeadvvvla.vkpedveevls 79
                   + ++G+Gn    +a  ++ ag   h + +  +r p+  +  a+++g                   + vta d +e++ ++d++++a ++ ++ +evl+
     KOO24262.1  3 VTVVGGGNSTPIFAALAADAG---HTVAIL-TRRPKDWD--ANDIGfvnddlgycdgktefrtkiALVTA-DPAECIPQSDMIFIAgLPIHHNPEVLR 93
                   578999999999999999999...999977.77777664..445555578888*********99555555.*************98689999****** PP

                   HCGHHH CS
  F420_oxidored 80 elakda 85
                   +++++ 
     KOO24262.1 94 KIKPHM 99
                   996654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (403 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       404  (0.0225333); expected 358.6 (0.02)
Passed bias filter:                      390  (0.0217525); expected 358.6 (0.02)
Passed Vit filter:                        47  (0.00262145); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.47u 0.28s 00:00:00.75 Elapsed: 00:00:00.42
# Mc/sec: 2902.20
//
Query:       KOO24263.1  [L=108]
Description: hypothetical protein Ctob_003453 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (108 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       412  (0.0229795); expected 358.6 (0.02)
Passed bias filter:                      339  (0.0189079); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.25s 00:00:00.60 Elapsed: 00:00:00.39
# Mc/sec: 832.04
//
Query:       KOO24264.1  [L=207]
Description: calcium-dependent protein kinase 13-like protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
      2e-25   86.4   1.3    1.3e-05   24.4   0.0    4.4  4  EF-hand_1     EF hand
      3e-24   82.8   1.1      3e-05   23.6   0.0    4.3  4  EF-hand_6     EF-hand domain
    1.9e-22   77.7   1.4    1.2e-05   24.6   0.0    4.3  4  EF-hand_5     EF hand
    8.6e-22   77.4   0.3    1.6e-10   41.3   0.0    2.2  2  EF-hand_7     EF-hand domain pair
    4.4e-16   58.5   5.0    6.3e-05   22.7   0.1    4.1  4  EF-hand_8     EF-hand domain pair
    4.2e-06   27.1   0.1       0.14   12.5   0.0    2.5  2  SPARC_Ca_bdg  Secreted protein acidic and rich in cysteine Ca
    0.00017   21.5   0.9      0.012   15.6   0.2    2.8  2  EF-hand_4     Cytoskeletal-regulatory complex EF hand
     0.0035   17.4   0.1       0.34   11.0   0.0    2.4  2  Sigma70_r1_1  Sigma-70 factor, region 1.1
     0.0051   17.1   0.1        4.2    7.8   0.0    3.4  4  EF-hand_9     EF-hand domain
  ------ inclusion threshold ------
       0.74   10.1   6.0        4.7    7.5   0.1    2.9  3  Dockerin_1    Dockerin type I domain


Domain annotation for each model (and alignments):
>> EF-hand_1  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.4   0.0   7.3e-09   1.3e-05       2      27 ..      46      71 ..      45      73 .. 0.89
   2 !   23.0   0.0     2e-08   3.5e-05       2      27 ..      80     105 ..      79     107 .. 0.91
   3 !   17.5   0.1   1.2e-06    0.0021       2      27 ..     131     156 ..     130     158 .. 0.89
   4 !   17.8   0.0   9.5e-07    0.0017       3      27 ..     167     191 ..     165     193 .. 0.90

  Alignments for each domain:
  == domain 1  score: 24.4 bits;  conditional E-value: 7.3e-09
                HHHHHHHHTTTSSSEEEHHHHHHHHH CS
   EF-hand_1  2 lkeiFrefDkDgdGkIdfeEfkellk 27
                 + +F+++D+DgdG++++eE+++ l+
  KOO24264.1 46 AEAVFSVVDVDGDGTVTKEELMSHLT 71
                5789*****************98776 PP

  == domain 2  score: 23.0 bits;  conditional E-value: 2e-08
                 HHHHHHHHTTTSSSEEEHHHHHHHHH CS
   EF-hand_1   2 lkeiFrefDkDgdGkIdfeEfkellk 27 
                 +++iF+++D D++G +++eE+++ ++
  KOO24264.1  80 VEKIFEKLDIDKSGCLSLEELIAGFA 105
                 689******************99875 PP

  == domain 3  score: 17.5 bits;  conditional E-value: 1.2e-06
                 HHHHHHHHTTTSSSEEEHHHHHHHHH CS
   EF-hand_1   2 lkeiFrefDkDgdGkIdfeEfkellk 27 
                  + +F+ +D ++dG I+  E++  l+
  KOO24264.1 131 ADALFNAIDGNNDGEITDAELRVHLR 156
                 6899*****************98776 PP

  == domain 4  score: 17.8 bits;  conditional E-value: 9.5e-07
                 HHHHHHHTTTSSSEEEHHHHHHHHH CS
   EF-hand_1   3 keiFrefDkDgdGkIdfeEfkellk 27 
                  +iF+++D++ +G +d++E+++++ 
  KOO24264.1 167 TNIFSMLDTNANGGVDRKELRSAFV 191
                 589******************9985 PP

>> EF-hand_6  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.6   0.0   1.7e-08     3e-05       3      30 ..      47      73 ..      45      74 .. 0.90
   2 !   17.2   0.0   1.9e-06    0.0034       3      26 ..      81     104 ..      79     108 .. 0.90
   3 !   19.2   0.3   4.3e-07   0.00078       3      28 ..     132     157 ..     130     163 .. 0.89
   4 !   18.4   0.0   7.7e-07    0.0014       4      26 ..     168     190 ..     165     198 .. 0.90

  Alignments for each domain:
  == domain 1  score: 23.6 bits;  conditional E-value: 1.7e-08
   EF-hand_6  3 reaFklfDkdgdGkidaeElrkalrkal 30
                +++F   D+dgdG++++eEl+++l+ a 
  KOO24264.1 47 EAVFSVVDVDGDGTVTKEELMSHLT-AS 73
                679*********************9.65 PP

  == domain 2  score: 17.2 bits;  conditional E-value: 1.9e-06
   EF-hand_6   3 reaFklfDkdgdGkidaeElrkal 26 
                 +++F+++D d++G+++ eEl++ +
  KOO24264.1  81 EKIFEKLDIDKSGCLSLEELIAGF 104
                 689*****************9865 PP

  == domain 3  score: 19.2 bits;  conditional E-value: 4.3e-07
   EF-hand_6   3 reaFklfDkdgdGkidaeElrkalrk 28 
                 +++F+++D ++dG+i+ +Elr +lr+
  KOO24264.1 132 DALFNAIDGNNDGEITDAELRVHLRQ 157
                 579*******************9996 PP

  == domain 4  score: 18.4 bits;  conditional E-value: 7.7e-07
   EF-hand_6   4 eaFklfDkdgdGkidaeElrkal 26 
                  +F ++D++ +G +d++Elr+a+
  KOO24264.1 168 NIFSMLDTNANGGVDRKELRSAF 190
                 68******************987 PP

>> EF-hand_5  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.6   0.0   6.6e-09   1.2e-05       3      22 ..      48      67 ..      46      70 .. 0.91
   2 !   14.2   0.1   1.3e-05     0.023       2      22 ..      81     101 ..      80     105 .. 0.88
   3 !   21.3   0.1     7e-08   0.00013       2      22 ..     132     152 ..     131     157 .. 0.91
   4 !   13.7   0.0   1.8e-05     0.032       5      24 ..     170     190 ..     167     191 .. 0.88

  Alignments for each domain:
  == domain 1  score: 24.6 bits;  conditional E-value: 6.6e-09
                HHHHHH-SS-SSCE-HHHHH CS
   EF-hand_5  3 dtFqaiDlNgDGkIskeELk 22
                ++F+ +D++gDG+++keEL+
  KOO24264.1 48 AVFSVVDVDGDGTVTKEELM 67
                79****************97 PP

  == domain 2  score: 14.2 bits;  conditional E-value: 1.3e-05
                 HHHHHHH-SS-SSCE-HHHHH CS
   EF-hand_5   2 kdtFqaiDlNgDGkIskeELk 22 
                 ++ F+++D +++G +s eEL 
  KOO24264.1  81 EKIFEKLDIDKSGCLSLEELI 101
                 578****************96 PP

  == domain 3  score: 21.3 bits;  conditional E-value: 7e-08
                 HHHHHHH-SS-SSCE-HHHHH CS
   EF-hand_5   2 kdtFqaiDlNgDGkIskeELk 22 
                 +++F+aiD N+DG I+  EL+
  KOO24264.1 132 DALFNAIDGNNDGEITDAELR 152
                 469****************97 PP

  == domain 4  score: 13.7 bits;  conditional E-value: 1.8e-05
                 HHHH-SS-SSCE-HHHHHH.H CS
   EF-hand_5   5 FqaiDlNgDGkIskeELkt.l 24 
                 F+++D+N  G +++ EL+  +
  KOO24264.1 170 FSMLDTNANGGVDRKELRSaF 190
                 9****************9755 PP

>> EF-hand_7  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.3   0.0   8.7e-14   1.6e-10       3      68 ..      45     102 ..      43     105 .. 0.87
   2 !   34.4   0.1   1.3e-11   2.3e-08       7      70 ..     134     190 ..     129     191 .. 0.92

  Alignments for each domain:
  == domain 1  score: 41.3 bits;  conditional E-value: 8.7e-14
   EF-hand_7   3 klkeaFkelDtdgdgyldkeellrllrkifqgagegsklsdeelellfkefDtdkdGvisfdEFlk 68 
                 + + +F   D+dgdg ++keel++ l+        g k   e++e++f+++D dk+G++s++E+ +
  KOO24264.1  45 DAEAVFSVVDVDGDGTVTKEELMSHLT------ASGYK--AEAVEKIFEKLDIDKSGCLSLEELIA 102
                 56678******************7777......78887..568********************976 PP

  == domain 2  score: 34.4 bits;  conditional E-value: 1.3e-11
   EF-hand_7   7 aFkelDtdgdgyldkeellrllrkifqgagegsklsdeelellfkefDtdkdGvisfdEFlkly 70 
                  F+++D ++dg ++ +el+ ++       +  s++sd ++  +f ++Dt+ +G +++ E++ ++
  KOO24264.1 134 LFNAIDGNNDGEITDAELR-VHL------RQFSNFSDAAITNIFSMLDTNANGGVDRKELRSAF 190
                 5******************.888......8899**************************99875 PP

>> EF-hand_8  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.1   3.1e-06    0.0055      25      50 ..      43      68 ..      42      72 .. 0.92
   2 !   22.7   0.0   3.6e-08   6.4e-05       5      53 ..      61     105 ..      60     107 .. 0.92
   3 !   11.8   0.1   9.3e-05      0.17      27      49 ..     130     152 ..     128     156 .. 0.89
   4 !   22.7   0.1   3.5e-08   6.3e-05       2      54 ..     143     192 ..     143     193 .. 0.94

  Alignments for each domain:
  == domain 1  score: 16.5 bits;  conditional E-value: 3.1e-06
   EF-hand_8 25 eeevdilfrefDtdgdGkisfeEFcv 50
                +++++++f+ +D dgdG++++eE + 
  KOO24264.1 43 KQDAEAVFSVVDVDGDGTVTKEELMS 68
                6899*******************986 PP

  == domain 2  score: 22.7 bits;  conditional E-value: 3.6e-08
   EF-hand_8   5 Itreelrrilrilglkk.glseeevdilfrefDtdgdGkisfeEFcvlle 53 
                 +t+eel++     +l   g+ +e+v+ +f ++D+d++G +s+eE ++ ++
  KOO24264.1  61 VTKEELMS-----HLTAsGYKAEAVEKIFEKLDIDKSGCLSLEELIAGFA 105
                 79******.....888899*************************998776 PP

  == domain 3  score: 11.8 bits;  conditional E-value: 9.3e-05
   EF-hand_8  27 evdilfrefDtdgdGkisfeEFc 49 
                 ++d+lf+++D ++dG i+  E  
  KOO24264.1 130 DADALFNAIDGNNDGEITDAELR 152
                 689***************99976 PP

  == domain 4  score: 22.7 bits;  conditional E-value: 3.5e-08
   EF-hand_8   2 kgkItreelrrilrilglkk..glseeevdilfrefDtdgdGkisfeEFcvller 54 
                 +g+It +elr      +l++   +s+ +++ +f+ +Dt+ +G ++ +E    ++r
  KOO24264.1 143 DGEITDAELRV-----HLRQfsNFSDAAITNIFSMLDTNANGGVDRKELRSAFVR 192
                 79*********.....9999999*************************9888765 PP

>> SPARC_Ca_bdg  Secreted protein acidic and rich in cysteine Ca binding region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.8   0.0   0.00012      0.22      50     110 ..      40     100 ..      32     102 .. 0.82
   2 !   12.5   0.0   7.7e-05      0.14      51     110 ..     126     186 ..     117     189 .. 0.82

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 0.00012
  SPARC_Ca_bdg  50 keckepvawkFsklDtnsdkvlsksELap.lraplvklehCikpflescDadkdkkislkEw 110
                   +++k+ ++  Fs +D++ d++++k+EL + l+a+  k e  +++ +e+ D dk + +sl+E 
    KOO24264.1  40 SNIKQDAEAVFSVVDVDGDGTVTKEELMShLTASGYKAE-AVEKIFEKLDIDKSGCLSLEEL 100
                   5677888889****************9752777655555.689999************9996 PP

  == domain 2  score: 12.5 bits;  conditional E-value: 7.7e-05
  SPARC_Ca_bdg  51 eckepvawkFsklDtnsdkvlsksELa.plraplvklehCikpflescDadkdkkislkEw 110
                    ++  +   F+ +D n+d+ ++ +EL+ +lr+     +  i++ ++  D++ ++ +++kE 
    KOO24264.1 126 LIHADADALFNAIDGNNDGEITDAELRvHLRQFSNFSDAAITNIFSMLDTNANGGVDRKEL 186
                   55555666799***************84688877889999**************9999995 PP

>> EF-hand_4  Cytoskeletal-regulatory complex EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.2   6.5e-06     0.012      16      66 ..      50     101 ..      35     105 .. 0.85
   2 ?    2.8   0.0     0.064   1.2e+02      21      65 ..     141     186 ..     127     192 .. 0.78

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 6.5e-06
   EF-hand_4  16 fsglk.pednkltgdkvapvlknskleedklekiwdladidedgkldfeefc 66 
                 fs ++ + d ++t++++ + l  s  + + +eki++  did+ g+l +ee++
  KOO24264.1  50 FSVVDvDGDGTVTKEELMSHLTASGYKAEAVEKIFEKLDIDKSGCLSLEELI 101
                 555542457899*************************************986 PP

  == domain 2  score: 2.8 bits;  conditional E-value: 0.064
   EF-hand_4  21 pednkltgdkvapvlkn.skleedklekiwdladidedgkldfeef 65 
                 ++d ++t+ ++   l++ s++++  +++i+++ d + +g +d +e+
  KOO24264.1 141 NNDGEITDAELRVHLRQfSNFSDAAITNIFSMLDTNANGGVDRKEL 186
                 456678888887777654999999***********99999998875 PP

>> Sigma70_r1_1  Sigma-70 factor, region 1.1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.0   0.0   0.00019      0.34      18      46 ..      59      87 ..      57      90 .. 0.94
   2 ?    3.7   0.0     0.035        62      14      47 ..     140     174 ..     138     179 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00019
                  SCEEHHHHHHHGCCSS--HHHHHHHHHHH CS
  Sigma70_r1_1 18 GyLtyeEindaLpddeldseqiediiemL 46
                  G++t eE++ +L  +  ++e++e+i+e+L
    KOO24264.1 59 GTVTKEELMSHLTASGYKAEAVEKIFEKL 87
                  99************************998 PP

  == domain 2  score: 3.7 bits;  conditional E-value: 0.035
                   HHHHSCEEHHHHHHHGCCSS.--HHHHHHHHHHHH CS
  Sigma70_r1_1  14 gKkkGyLtyeEindaLpdde.ldseqiediiemLe 47 
                   g   G +t +E+  +L ++  ++  +i +i++mL+
    KOO24264.1 140 GNNDGEITDAELRVHLRQFSnFSDAAITNIFSMLD 174
                   567899**********97764788899****9996 PP

>> EF-hand_9  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.8   0.0    0.0023       4.2       1      29 [.      47      75 ..      47      88 .. 0.83
   2 ?    2.4   0.0      0.11     2e+02       2      22 ..      82     102 ..      81     108 .. 0.89
   3 ?    3.1   0.0     0.066   1.2e+02       1      45 [.     132     174 ..     132     183 .. 0.77
   4 ?   -0.4   0.0      0.86   1.5e+03       3      16 ..     169     182 ..     167     189 .. 0.82

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 0.0023
   EF-hand_9  1 etvFevcDtqktGrVpvsrlidyLravta 29
                e+vF+v D++  G+V+  +l++ L a + 
  KOO24264.1 47 EAVFSVVDVDGDGTVTKEELMSHLTASGY 75
                689******************99998876 PP

  == domain 2  score: 2.4 bits;  conditional E-value: 0.11
   EF-hand_9   2 tvFevcDtqktGrVpvsrlid 22 
                  +Fe  D++k G   + +li+
  KOO24264.1  82 KIFEKLDIDKSGCLSLEELIA 102
                 78************9999996 PP

  == domain 3  score: 3.1 bits;  conditional E-value: 0.066
   EF-hand_9   1 etvFevcDtqktGrVpvsrlidyLravtaqdpeeseLeelakelD 45 
                 +++F++ D +  G+++ ++l   Lr+  +   +++++ +  ++lD
  KOO24264.1 132 DALFNAIDGNNDGEITDAELRVHLRQFSN--FSDAAITNIFSMLD 174
                 67899999999999999999999998877..66666666666666 PP

  == domain 4  score: -0.4 bits;  conditional E-value: 0.86
   EF-hand_9   3 vFevcDtqktGrVp 16 
                 +F++ Dt+  G V 
  KOO24264.1 169 IFSMLDTNANGGVD 182
                 799*****999986 PP

>> Dockerin_1  Dockerin type I domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.5   0.1    0.0026       4.7      32      47 ..      48      63 ..      33      68 .. 0.74
   2 ?    3.8   0.3     0.038        68      35      47 ..     136     148 ..     127     157 .. 0.80
   3 ?    2.5   2.2     0.096   1.7e+02       3      46 ..     139     182 ..     137     186 .. 0.63

  Alignments for each domain:
  == domain 1  score: 7.5 bits;  conditional E-value: 0.0026
                CCHGGGSTT-SSCESH CS
  Dockerin_1 32 sngkaaDvNgDGrvna 47
                      Dv+gDG+v++
  KOO24264.1 48 AVFSVVDVDGDGTVTK 63
                5556789999999987 PP

  == domain 2  score: 3.8 bits;  conditional E-value: 0.038
                 GGGSTT-SSCESH CS
  Dockerin_1  35 kaaDvNgDGrvna 47 
                 +a D N+DG+++ 
  KOO24264.1 136 NAIDGNNDGEITD 148
                 6788899999886 PP

  == domain 3  score: 2.5 bits;  conditional E-value: 0.096
                 ETTSSSC-SHHHHHHHHHHCTSSEBTTSCCCHGGGSTT-SSCES CS
  Dockerin_1   3 DVNgDgkVnalDalliinylnqregqssssngkaaDvNgDGrvn 46 
                 D N+Dg+++   + +  ++  + ++   ++   ++D N +G v+
  KOO24264.1 139 DGNNDGEITDAELRVHLRQFSNFSDAAITNIFSMLDTNANGGVD 182
                 66777777766666655555556666666666677777777665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (207 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       612  (0.0341346); expected 358.6 (0.02)
Passed bias filter:                      570  (0.0317921); expected 358.6 (0.02)
Passed Vit filter:                        58  (0.00323498); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.42u 0.31s 00:00:00.73 Elapsed: 00:00:00.43
# Mc/sec: 1461.88
//
Query:       KOO24265.1  [L=548]
Description: hypothetical protein Ctob_006088 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.56   10.4   6.0       0.81    9.9   0.3    2.3  2  GCN5L1    GCN5-like protein 1 (GCN5L1)


Domain annotation for each model (and alignments):
>> GCN5L1  GCN5-like protein 1 (GCN5L1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   0.3   4.5e-05      0.81      36      83 ..      11      57 ..       6      61 .. 0.84
   2 ?    2.5   1.0    0.0087   1.6e+02      62      97 ..     250     285 ..     247     286 .. 0.92

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 4.5e-05
      GCN5L1 36 dklnsgvaeayanqkklekeakalqanvakfakqtdqWlalvesfnsa 83
                 + ++gv +a +  ++le ++k+l +++ak+ +q ++ la++e+++  
  KOO24265.1 11 SHEDAGVVQAVSD-QRLERKLKSLLKQSAKMDEQLAELLAATEALQGH 57
                5567788888665.58**************************998765 PP

  == domain 2  score: 2.5 bits;  conditional E-value: 0.0087
      GCN5L1  62 nvakfakqtdqWlalvesfnsalkeiGDvenWakti 97 
                 ++++++k  ++Wl    +++s+ +   D++ W++ +
  KOO24265.1 250 HLDQLQKVYQKWLDFSMDLRSNADAEKDIQGWVQEM 285
                 56899***************************9987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (548 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       645  (0.0359752); expected 358.6 (0.02)
Passed bias filter:                      518  (0.0288917); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.53u 0.27s 00:00:00.80 Elapsed: 00:00:00.41
# Mc/sec: 4033.29
//
Query:       KOO24266.1  [L=392]
Description: hypothetical protein Ctob_006089 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.1e-05   25.7   0.0    3.3e-05   24.1   0.0    1.8  2  Acetyltransf_1  Acetyltransferase (GNAT) family


Domain annotation for each model (and alignments):
>> Acetyltransf_1  Acetyltransferase (GNAT) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.1   0.0   1.8e-09   3.3e-05      29     109 ..      64     143 ..      44     152 .. 0.79
   2 ?   -2.4   0.0       0.3   5.4e+03      56      69 ..     261     274 ..     208     283 .. 0.63

  Alignments for each domain:
  == domain 1  score: 24.1 bits;  conditional E-value: 1.8e-09
                     HSTTCEEEEEEETTEEEEEEEEEEEET.TSTTEEEEEEEEESGGGTTSSHHHHHHHHHHHHHHHTTESEEEEEEETTEHHHH CS
  Acetyltransf_1  29 sleaegllvaeedgeliGfisllkipd.ekggvayieslaVspeyrgkGlGsaLlealeerareegikkivlaveedndaai 109
                     +l+ ++++   ++++++Gf+++  +   ++++ +++e+l V+p  +g G+ ++ ++a+   + +    +i+lav ++n++++
      KOO24266.1  64 RLHFNTFC--FDGERPAGFVRVECYGKpQSPDSGWLEGLRVDPLSQGLGVMTKVIDACTTTLPSTVRSAIYLAVGSTNEKMV 143
                     23333444..47799*****77777777789*****************************9999933679*****9998876 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 0.3
                     TSTTEEEEEEEEES CS
  Acetyltransf_1  56 ekggvayieslaVs 69 
                       + v++i+ ++Vs
      KOO24266.1 261 GQKVVIEIHTIVVS 274
                     45667777788776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (392 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       375  (0.0209158); expected 358.6 (0.02)
Passed bias filter:                      285  (0.015896); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.23s 00:00:00.68 Elapsed: 00:00:00.37
# Mc/sec: 3145.25
//
Query:       KOO24267.1  [L=310]
Description: ganglioside-induced differentiation-associated protein 2 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.8e-12   47.3   0.0    2.4e-12   46.9   0.0    1.2  1  Macro     Macro domain


Domain annotation for each model (and alignments):
>> Macro  Macro domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.9   0.0   1.3e-16   2.4e-12       5      99 ..      67     157 ..      63     177 .. 0.92

  Alignments for each domain:
  == domain 1  score: 46.9 bits;  conditional E-value: 1.3e-16
                 ETTSS-CSHHHHHHHHHHHHHHHHHHHHHHHHHHS--TTSEEEEE-TTSSSSEEEEEESE-TTTSTSTTHHHHHHHHHHHHHHHHHHTT-SEEEE CS
       Macro   5 NsrllggggvagaihraagkalkeeckelekkqggcllGeavvtpaynlpakyvihtvgplftsskskeeeellakayknalelaeekgiksvaf 99 
                 N+ l+   gv g i   +g  l++e+ ++    + +++Gea+ t ++ l a+ v+h++gp++++++ + +e+ l+ ay+  l+l+++kg+++va+
  KOO24267.1  67 NEALTDRTGVVGDIFSHGGTGLEREVLAI----ETVRTGEACDTAGHGLTARRVVHAIGPRYREQYAEAAESALHWAYRTTLQLCRDKGLRTVAL 157
                 8999999**********************....6699********************************************************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (310 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       268  (0.0149478); expected 358.6 (0.02)
Passed bias filter:                      241  (0.0134419); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.27s 00:00:00.65 Elapsed: 00:00:00.40
# Mc/sec: 2345.11
//
Query:       KOO24268.1  [L=103]
Description: hypothetical protein Ctob_006085 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (103 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       572  (0.0319036); expected 358.6 (0.02)
Passed bias filter:                      268  (0.0149478); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.39u 0.25s 00:00:00.64 Elapsed: 00:00:00.43
# Mc/sec: 725.53
//
Query:       KOO24269.1  [L=519]
Description: ammonium transporter [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   6.4e-105  351.1  30.9   7.5e-105  350.9  30.9    1.0  1  Ammonium_transp  Ammonium Transporter Family


Domain annotation for each model (and alignments):
>> Ammonium_transp  Ammonium Transporter Family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  350.9  30.9  4.2e-109  7.5e-105       1     399 []      13     416 ..      13     416 .. 0.93

  Alignments for each domain:
  == domain 1  score: 350.9 bits;  conditional E-value: 4.2e-109
                      HHHHHHHHHHHHHHHHHHHHHHHHSSGGGHHHHHHHHHHHHHHHHHHHHHTHHHHHHSSCBSSSSSCE-...................TTTTSC CS
  Ammonium_transp   1 aflllsaalvifmqagfalleaglvrsknvlnilvknlldlavvvllyvlfGyslafgkskgvsgfign...................lglsaa 75 
                      a++l+s+alv +m +g+a+++agl r+++v++il++n+++++++++l++lf +sl+fg+ + ++g i +                    ++  a
       KOO24269.1  13 AWMLISMALVQLMLPGLAFFYAGLLRHNSVIAILMQNFVAMGLIFVLWFLFVFSLCFGHTYFIWGSITTfgafnnvddsplyrnyvdpSRV--A 104
                      7************************************************************666666654777777777777666544333..3 PP

                      CGCCTTCCHHHHHHHHHHHHHHHHHHHHHHCTTTB-HHHHHHHHHHHHHHTHHHHHHHHHS.SSHHHHTT--.-SSSTTTTHHHHHHHHHHHHH CS
  Ammonium_transp  76 gvqdetlldglfflfqlafaataitivsgavaerikfsayllfsallgtlvyppvahwvwgeggwlaklgvliDfAgstvVHlvggvagLaaal 169
                      g+  + ++ ++f+ +q +fa+++ ++++ga+a+r++f +yl+f+ l++ lvy+p+ hw+wg ggw+a +gv  DfAg++vVH+++g+++Laa+ 
       KOO24269.1 105 GTVVSDIPGLVFAGYQGMFACITPALMTGAFADRLRFGPYLIFISLWIILVYAPFCHWIWG-GGWMAAWGVR-DFAGGIVVHTTAGFSALAAVH 196
                      44444466666**************************************************.**********.********************* PP

                      HHS-STTTTGTTTSS--GSBHHHHHHHHHHHHHHHHHHHHGGGSSSSHHHHH.HHHHHHHHHHHHHHHHHHHHHHHCSS-BHHHHHHHHHHHHH CS
  Ammonium_transp 170 vlgkregrfegkeeaikghnlpfavlGtllLwfgWfgFNaGsaltankrararaavtTllAaaagaltallisrlkegkinvlglanGilAGlV 263
                      vlg re+ + g +  +++hn+pf+ lGt+lLwfgWfgFN+Gsal+ ++ a+  aav++ + a+++  ++++i++l++gk++++gl+ G++AGl+
       KOO24269.1 197 VLGSREKIE-GAKVDSQPHNIPFVALGTALLWFGWFGFNGGSALASTGSAAI-AAVNSEITASTALTVWVAIEWLRNGKPSLVGLCIGAVAGLA 288
                      ******877.9***************************************99.***************************************** PP

                      HHTTTTTTS-HHHHHHHHHHHHHHHHHHHHHHHHHHTC-CTTHHHHHHHHHHHHHHHHHHHHTSHHHCSSHSSTTGGGT-CHHHHHHHHHHHHH CS
  Ammonium_transp 264 AiTaacavvepwgAliiGlvAgvlsvlgvkklkeklkidDsldvvavHgvgGiwGllavgifaaekvvaskisggllsgegkqlvvqligilvi 357
                       iT+ +++v+pw+A++iG++A+v+++  + +lk++++ dD+ldv++vHg+gG++G++++g+fa++       sg  ++++  ++++ql+++ ++
       KOO24269.1 289 TITPCAGFVRPWAAFVIGILASVFCYGCC-MLKNHAGWDDALDVWGVHGMGGALGSVLTGVFADSTI-----SGSPARSGL-LFGKQLAATSLA 375
                      **************************999.6*********************************974.....455555555.77889******* PP

                      HHHHHHHHHHHHHHHHHHTTSB--HHHHHHSHHHHHHSSSSB CS
  Ammonium_transp 358 layafvvtlilllllklllgLrvseeeeevglDvaehgetay 399
                      ++y+ vv+++ll l++l+l L+   +ee++ +D + h+e ay
       KOO24269.1 376 ALYSYVVSIVLLRLIGLFLRLKP-TKEEMANIDKSFHNELAY 416
                      ********************998.89999*********9998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (519 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       792  (0.0441742); expected 358.6 (0.02)
Passed bias filter:                      368  (0.0205254); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.54u 0.23s 00:00:00.77 Elapsed: 00:00:00.40
# Mc/sec: 3855.15
//
Query:       KOO24270.1  [L=240]
Description: tccd-inducible-parp-like domain-containing protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.4e-13   50.8   0.5    3.1e-09   36.7   0.0    2.4  2  PARP      Poly(ADP-ribose) polymerase catalytic domain


Domain annotation for each model (and alignments):
>> PARP  Poly(ADP-ribose) polymerase catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.7   0.0   1.7e-13   3.1e-09      17     120 ..      52     206 ..      41     208 .. 0.81
   2 !   12.0   1.0   6.5e-06      0.12     172     194 ..     208     230 ..     205     231 .. 0.90

  Alignments for each domain:
  == domain 1  score: 36.7 bits;  conditional E-value: 1.7e-13
                 TTTTEEEEEEEEEEEEETTHHHHCGCCGG.....................................SS-EEEEEEEE-GGGHHHHHHH-S--S-TTS-G CS
        PARP  17 sthayklkileifrvqregeaerfqekkk.....................................lrnrrlLfHGsrltnvasilsqGLriappeapv 78 
                  th  +l++   +r++++ ++e++ +  +                                     + n+  L HG++  ++++ils GL  + ++a++
  KOO24270.1  52 TTHD-RLELTCAWRLENPALWEKYMSGVQgvmndmkrirqgrvasaggappltcgvadtlpgdlrvDVNEAFLMHGTNAGVLFNILSTGL--NERFAST 147
                 4554.8899999999999999999998778888888888888887777777777777777777777778*********************..8899888 PP

                 GGSTTSSSEEEBSSHHHHHGGG--BSSS-EEE..................EEEEEEE--S CS
        PARP  79 tGymfGkGiYfAddaskSanYcktsekkgsgl..................llLaeValGd 120
                   + +G+G+Y+A+da k  +Y++ + +                       +l+++ValG 
  KOO24270.1 148 -KAAYGEGSYLAEDAGKNDQYTRVDLQYDGDSelhqrlyahgwhpgkvfyILVCRVALGH 206
                 .678*****************997332222223477889*******************97 PP

  == domain 2  score: 12.0 bits;  conditional E-value: 6.5e-06
                 EEE-EEEESSGGGEEEEEEEEEE CS
        PARP 172 leyneyvvydkeqvrlkYLlevk 194
                 + y+e++v++ e ++++YLl ++
  KOO24270.1 208 VRYREFIVFHSEYIYPEYLLAYQ 230
                 789*****************985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (240 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       344  (0.0191868); expected 358.6 (0.02)
Passed bias filter:                      321  (0.017904); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.21s 00:00:00.63 Elapsed: 00:00:00.36
# Mc/sec: 1974.89
//
Query:       KOO24271.1  [L=333]
Description: ankyrin repeat domain protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.1e-21   76.9   5.5      3e-08   34.1   0.1    3.4  5  Ank_4           Ankyrin repeats (many copies)
    4.4e-21   75.3   0.0      2e-10   41.1   0.0    2.2  2  Ank_2           Ankyrin repeats (3 copies)
    7.6e-17   61.2   3.2    3.6e-09   36.7   0.3    2.7  2  Ank_5           Ankyrin repeats (many copies)
    3.2e-14   51.6   0.0    0.00042   20.6   0.0    4.6  4  Ank_3           Ankyrin repeat
    4.8e-13   48.9   0.8    1.1e-05   25.6   0.0    3.9  4  Ank             Ankyrin repeat
  ------ inclusion threshold ------
      0.041   14.0   0.5      0.081   13.1   0.2    1.6  2  Acetyltransf_6  Acetyltransferase (GNAT) domain


Domain annotation for each model (and alignments):
>> Ank_4  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.1   0.1     1e-11     3e-08       9      55 .]     119     165 ..     115     165 .. 0.89
   2 !   21.3   0.0   9.9e-08    0.0003       2      38 ..     146     181 ..     146     181 .. 0.96
   3 ?   -3.4   0.0       5.6   1.7e+04      11      30 ..     187     204 ..     184     210 .. 0.63
   4 !   20.1   0.0   2.4e-07   0.00073      17      55 .]     252     286 ..     241     286 .. 0.85
   5 !   23.3   0.1   2.4e-08   7.2e-05       4      47 ..     269     311 ..     267     319 .. 0.91

  Alignments for each domain:
  == domain 1  score: 34.1 bits;  conditional E-value: 1e-11
       Ank_4   9 aisgrlelvrlLlekgadinaqdnrsGe.talhiAakrgnveilklLl 55 
                 ++s++l  vr Ll+ g d+n + +++G+ t+lh Aa rg+ e++ lLl
  KOO24271.1 119 VASNQLSQVRELLNLGHDVNTV-DADGDrTPLHWAAARGHRECIDLLL 165
                 56899999**************.7666659****************98 PP

  == domain 2  score: 21.3 bits;  conditional E-value: 9.9e-08
       Ank_4   2 ltaLhyaaisgrlelvrlLlekgadinaqdnrsGeta 38 
                 +t+Lh+aa+ g+ e+++lLl  gad  a+ +++G+t+
  KOO24271.1 146 RTPLHWAAARGHRECIDLLLKAGADKTAR-DAEGRTP 181
                 69***********************99*9.*****98 PP

  == domain 3  score: -3.4 bits;  conditional E-value: 5.6
       Ank_4  11 sgrlelvrlLlekgadinaq 30 
                 +++ +++r L+ +ga   +q
  KOO24271.1 187 DCDRPAIRDLIKYGAP--RQ 204
                 5555677888888876..55 PP

  == domain 4  score: 20.1 bits;  conditional E-value: 2.4e-07
       Ank_4  17 vrlLlekgadinaqdnrsGet.alhiAakrgnveilklLl 55 
                 +r L+    ++n++ +++G+  +lh Aa rg+  ++k+L+
  KOO24271.1 252 LRELF----SVNKR-DADGDRfPLHWAAARGSTACVKMLI 286
                 55566....6****.*****99*****************8 PP

  == domain 5  score: 23.3 bits;  conditional E-value: 2.4e-08
       Ank_4   4 aLhyaaisgrlelvrlLlekgadinaqdnrsGetalhiAakrgn 47 
                 +Lh+aa+ g + +v+ L+e ga i a  +++G+ta   A ++++
  KOO24271.1 269 PLHWAAARGSTACVKMLIEAGATIGAL-DANGNTAAALAFQFNQ 311
                 7*************************9.*******988888876 PP

>> Ank_2  Ankyrin repeats (3 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.1   0.0   6.6e-14     2e-10       1      76 [.     115     200 ..     115     206 .. 0.79
   2 !   31.9   0.0   4.8e-11   1.4e-07      14      81 ..     253     327 ..     242     329 .. 0.81

  Alignments for each domain:
  == domain 1  score: 41.1 bits;  conditional E-value: 6.6e-14
       Ank_2   1 LhlAakngnlelvklLl.egadpn..k..ngktaLhyAakngnleivklLleh......adndgrtpLhyAarsghleivklLlekg 76 
                 L l++ +++l+ v+ Ll  g+d+n  +   ++t+Lh+Aa +g++e++ lLl++       d +grtp  +A+ ++++ i + L+++g
  KOO24271.1 115 LSLCVASNQLSQVRELLnLGHDVNtvDadGDRTPLHWAAARGHRECIDLLLKAgadktaRDAEGRTPSELAVDCDRPAIRD-LIKYG 200
                 56788888889999999989999987355669*******************966555655588*********998855544.65555 PP

  == domain 2  score: 31.9 bits;  conditional E-value: 4.8e-11
       Ank_2  14 klLl..egadpnkngktaLhyAakngnleivklLleh......adndgrtpLhyAarsghleivklLlekgadinl 81 
                 + L   ++ d++  ++++Lh+Aa +g++ +vk+L+e+      +d +g+t+  +A ++++  + ++Ll   ad+ l
  KOO24271.1 253 RELFsvNKRDAD-GDRFPLHWAAARGSTACVKMLIEAgatigaLDANGNTAAALAFQFNQRATHEVLLRAIADLPL 327
                 555545666766.569*******************977778888899************99999999966777765 PP

>> Ank_5  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.7   0.3   1.2e-12   3.6e-09       1      56 []     130     185 ..     130     185 .. 0.95
   2 !   24.5   0.2     8e-09   2.4e-05      14      56 .]     265     306 ..     252     306 .. 0.87

  Alignments for each domain:
  == domain 1  score: 36.7 bits;  conditional E-value: 1.2e-12
       Ank_5   1 Llehg.padvnrldgggntpLhvAakygaadvvrlLlargadlnltdsrGltaldlA 56 
                 Ll+ g ++++ + dg++ tpLh+Aa +g+ +++ lLl+ gad +++d++G+t+ +lA
  KOO24271.1 130 LLNLGhDVNTVDADGDR-TPLHWAAARGHRECIDLLLKAGADKTARDAEGRTPSELA 185
                 78889999999999999.***********************************8887 PP

  == domain 2  score: 24.5 bits;  conditional E-value: 8e-09
       Ank_5  14 gggntpLhvAakygaadvvrlLlargadlnltdsrGltaldlA 56 
                 g++  pLh+Aa +g+  +v++L++ ga +++ d++G+ta  lA
  KOO24271.1 265 GDR-FPLHWAAARGSTACVKMLIEAGATIGALDANGNTAAALA 306
                 333.8**********************************8776 PP

>> Ank_3  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.0   0.0      0.07   2.1e+02       8      30 ..     118     138 ..     115     139 .. 0.83
   2 !   20.6   0.0   1.4e-07   0.00042       3      28 ..     146     170 ..     144     173 .. 0.93
   3 !    6.2   0.0    0.0066        20       1      27 [.     177     201 ..     177     203 .. 0.93
   4 !   16.0   0.0   4.3e-06     0.013       5      29 ..     269     292 ..     266     294 .. 0.91

  Alignments for each domain:
  == domain 1  score: 3.0 bits;  conditional E-value: 0.07
       Ank_3   8 lAarsgnleivkfLlenkgadvn 30 
                 ++a+++    v+ Ll+  g dvn
  KOO24271.1 118 CVASNQLSQ-VRELLN-LGHDVN 138
                 677788888.******.9***99 PP

  == domain 2  score: 20.6 bits;  conditional E-value: 1.4e-07
       Ank_3   3 etpLhlAarsgnleivkfLlenkgad 28 
                 +tpLh+Aa  g+ e +++Ll+  gad
  KOO24271.1 146 RTPLHWAAARGHRECIDLLLK-AGAD 170
                 8********************.8998 PP

  == domain 3  score: 6.2 bits;  conditional E-value: 0.0066
       Ank_3   1 nGetpLhlAarsgnleivkfLlenkga 27 
                 +G+tp  lA+ +++++ ++ L++ +ga
  KOO24271.1 177 EGRTPSELAVDCDRPA-IRDLIK-YGA 201
                 59*************9.******.998 PP

  == domain 4  score: 16.0 bits;  conditional E-value: 4.3e-06
       Ank_3   5 pLhlAarsgnleivkfLlenkgadv 29 
                 pLh+Aa  g+++ vk+L+e  ga +
  KOO24271.1 269 PLHWAAARGSTACVKMLIE-AGATI 292
                 9**********99******.89987 PP

>> Ank  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.2   0.1       0.4   1.2e+03      17      31 ..     126     141 ..     115     142 .. 0.75
   2 !   25.6   0.0   3.8e-09   1.1e-05       3      31 ..     146     175 ..     145     176 .. 0.93
   3 ?   -1.6   0.0       1.5   4.5e+03       2      25 ..     178     201 ..     177     204 .. 0.62
   4 !   18.0   0.0   9.4e-07    0.0028       5      31 ..     269     296 ..     267     297 .. 0.91

  Alignments for each domain:
  == domain 1  score: 0.2 bits;  conditional E-value: 0.4
                 HHHHHHT.TTSTTCBT CS
         Ank  17 iiklLLh.GAnlnald 31 
                  +++LL+ G ++n +d
  KOO24271.1 126 QVRELLNlGHDVNTVD 141
                 58899955999*9988 PP

  == domain 2  score: 25.6 bits;  conditional E-value: 3.8e-09
                 BBHHHHHHHHTTHHHHHHHH.TTTSTTCBT CS
         Ank   3 nTPLHlAatngkkriiklLL.hGAnlnald 31 
                 +TPLH+Aa +g+ ++i lLL  GA+ +a+d
  KOO24271.1 146 RTPLHWAAARGHRECIDLLLkAGADKTARD 175
                 6*******99**********88***99998 PP

  == domain 3  score: -1.6 bits;  conditional E-value: 1.5
                 SBBHHHHHH..HHTTHHHHHHHH.TTT CS
         Ank   2 GnTPLHlAa..tngkkriiklLL.hGA 25 
                 G+TP  lA+   +     i++L+ +GA
  KOO24271.1 178 GRTPSELAVdcDRP---AIRDLIkYGA 201
                 55665565544334...6888887787 PP

  == domain 4  score: 18.0 bits;  conditional E-value: 9.4e-07
                 HHHHHHHHTTHHHHHHHH.TTTSTTCBT CS
         Ank   5 PLHlAatngkkriiklLL.hGAnlnald 31 
                 PLH+Aa +g++ ++k+L+  GA + ald
  KOO24271.1 269 PLHWAAARGSTACVKMLIeAGATIGALD 296
                 9*****99**********88**998887 PP

>> Acetyltransf_6  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.0       2.4   7.1e+03     121     135 ..     150     165 ..     148     171 .. 0.71
   2 ?   13.1   0.2   2.7e-05     0.081      11     101 ..     206     298 ..     202     327 .. 0.78

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 2.4
  Acetyltransf_6 121 edaaeeG.lrrfdlgg 135
                      +aa++G ++ +dl+ 
      KOO24271.1 150 HWAAARGhRECIDLLL 165
                     6889999455688875 PP

  == domain 2  score: 13.1 bits;  conditional E-value: 2.7e-05
  Acetyltransf_6  11 rrklee.lgevrfrva.tdpedleallelfraqwarr.pdvfadpltraflrdllaalaargalrlyvlrldgrpvAvalglrsgdrlyywlgg 101
                      +k++  +g+v+ r+a  +p++l+ ll++f+  +++r +++  dp+ r+++  + ++ a++++  l+++ + g  ++v +++++g ++ ++ + 
      KOO24271.1 206 SKKMTGtEGPVSMRCAlGNPQELAGLLRAFEIERRKRaSELEKDPRLRELFS-VNKRDADGDRFPLHWAAARGSTACVKMLIEAGATIGALDAN 298
                     5666543799*****956************877777777********99997.6778889*********************9999988776555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (333 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       390  (0.0217525); expected 358.6 (0.02)
Passed bias filter:                      339  (0.0189079); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.46u 0.24s 00:00:00.70 Elapsed: 00:00:00.41
# Mc/sec: 2411.63
//
Query:       KOO24272.1  [L=1247]
Description: hypothetical protein Ctob_006081 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
      2e-19   69.6   9.8      0.089   13.7   0.1    9.8 10  WD40         WD domain, G-beta repeat
      2e-10   40.4   0.3    1.1e-09   38.0   0.3    2.1  1  HELP         HELP motif
    2.8e-09   37.2   0.0     0.0018   18.5   0.0    4.0  3  ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain
    1.4e-07   31.8   0.0      0.014   15.9   0.0    2.5  2  EF-hand_7    EF-hand domain pair
  ------ inclusion threshold ------
       0.08   12.5   0.0         13    5.6   0.0    2.6  2  EF-hand_1    EF hand
        1.8    9.1   4.9        5.3    7.5   4.9    1.8  1  IATP         Mitochondrial ATPase inhibitor, IATP
        2.6    8.7   7.3        0.3   11.7   2.2    2.1  2  SlyX         SlyX


Domain annotation for each model (and alignments):
>> WD40  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.6   0.0   0.00067       1.7       3      37 ..     349     395 ..     347     396 .. 0.75
   2 ?    3.0   0.0     0.086   2.2e+02      13      31 ..     437     457 ..     426     464 .. 0.78
   3 !   13.7   0.1   3.5e-05     0.089      12      37 ..     550     574 ..     538     575 .. 0.87
   4 !    6.5   0.0    0.0067        17      10      37 ..     610     645 ..     605     646 .. 0.66
   5 ?   -4.0   0.0         7   1.8e+04      13      32 ..     685     703 ..     679     705 .. 0.69
   6 !    6.0   0.0    0.0091        23       8      38 .]     724     756 ..     718     756 .. 0.84
   7 !    6.7   0.0    0.0055        14      14      37 ..     775     798 ..     767     799 .. 0.89
   8 ?    3.6   0.0     0.054   1.4e+02      11      37 ..     827     853 ..     819     854 .. 0.78
   9 ?    4.2   0.0     0.035        89       6      25 ..     865     885 ..     861     887 .. 0.82
  10 !   11.4   0.0   0.00018      0.46       5      37 ..    1006    1046 ..    1001    1047 .. 0.76

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 0.00067
                 EEEEEESS.SSEEEEEEETTSSEEEEE.E...T.......TSEEEEE CS
        WD40   3 clrtltGH.ssvtslafspdgawlasG.s...d.......DgtvriW 37 
                 ++r +tGH ++v ++a++ + ++ a+G +   +       D+ v iW
  KOO24272.1 349 NQRFFTGHtKGVLAVAVDESRNYCATGqGpiaKtkegqdvDPFVSIW 395
                 7899****999************999753332133444458888888 PP

  == domain 2  score: 3.0 bits;  conditional E-value: 0.086
                 EEEEEEETTSSEEEEEET..T CS
        WD40  13 vtslafspdgawlasGsd..D 31 
                 + +++fs dg+ l+++++   
  KOO24272.1 437 IQAICFSEDGQRLITACRnpA 457
                 899***********9987445 PP

  == domain 3  score: 13.7 bits;  conditional E-value: 3.5e-05
                 SEEEEEEETTSSEEEEEETTSEEEEE CS
        WD40  12 svtslafspdgawlasGsdDgtvriW 37 
                 +v ++af ++g+ + +G+ Dg++++W
  KOO24272.1 550 DVFCCAFLDNGNVV-TGMSDGNIYLW 574
                 599**********7.7*66******* PP

  == domain 4  score: 6.5 bits;  conditional E-value: 0.0067
                 SSSEEEEE...........EETTSSEEEEEETTSEEEEE CS
        WD40  10 Hssvtsla...........fspdgawlasGsdDgtvriW 37 
                 H  v+ ++            +p  ++l sG+  gt+++W
  KOO24272.1 610 H--VHTVQvlkiryvreggGDPKATLL-SGGGGGTIKVW 645
                 5..444444445566677677888887.5755******* PP

  == domain 5  score: -4.0 bits;  conditional E-value: 7
                 EEEEE.EETTSSEEEEEETTS CS
        WD40  13 vtsla.fspdgawlasGsdDg 32 
                 v sl+ f+ + ++++ G+ D+
  KOO24272.1 685 VKSLDcFPGSEDLIV-GT-DK 703
                 566665777777776.98.64 PP

  == domain 6  score: 6.0 bits;  conditional E-value: 0.0091
                 ESS.SSEEEEEEETTSSEE.EEEETTSEEEEEE CS
        WD40   8 tGH.ssvtslafspdgawl.asGsdDgtvriWd 38 
                 +G   +v+++a +p +  + as+s+  +++iW+
  KOO24272.1 724 KGNaADVNGIAAHPTKEHIfASASESDKIYIWS 756
                 688778************835779********5 PP

  == domain 7  score: 6.7 bits;  conditional E-value: 0.0055
                 EEEEEETTSSEEEEEETTSEEEEE CS
        WD40  14 tslafspdgawlasGsdDgtvriW 37 
                 +++ f  dg+ la Gs Dg + ++
  KOO24272.1 775 SCCEFRGDGKHLAVGSTDGCIFVF 798
                 5888****************9886 PP

  == domain 8  score: 3.6 bits;  conditional E-value: 0.054
                 SSEEEEEEETTSSEEEEEETTSEEEEE CS
        WD40  11 ssvtslafspdgawlasGsdDgtvriW 37 
                 s + +l++spd + la++s+ +t+ ++
  KOO24272.1 827 SAIQDLRYSPDLRTLAAASREQTIDLY 853
                 3399*************9*99988555 PP

  == domain 9  score: 4.2 bits;  conditional E-value: 0.035
                 EEESS.SSEEEEEEETTSSEE CS
        WD40   6 tltGH.ssvtslafspdgawl 25 
                  +tGH   v ++++s d+++l
  KOO24272.1 865 RCTGHsATVLHIDWSADSKML 885
                 579**555*********9875 PP

  == domain 10  score: 11.4 bits;  conditional E-value: 0.00018
                  EEEESS.SSEEEEEEETTSSE..............EEEEETTSEEEEE CS
        WD40    5 rtltGH.ssvtslafspdgaw..............lasGsdDgtvriW 37  
                  ++l GH s+vt +      +w              +++G+ D++++ W
  KOO24272.1 1006 YHL-GHsSFVTNV------RWlkyknekgleelklISAGGHDRSLMQW 1046
                  444.9*777****......6655566699999996678888******* PP

>> HELP  HELP motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.0   0.3   4.3e-13   1.1e-09      28      73 ..     274     336 ..     267     337 .. 0.94

  Alignments for each domain:
  == domain 1  score: 38.0 bits;  conditional E-value: 4.3e-13
        HELP  28 kselPdekLkLewvyGYrgk.................dcrnnlfllptgeivYfvAavvvlyn 73 
                  +++Pd +L+Le+vyGY+g                     +nlf+++t+e+vY +Aav++++n
  KOO24272.1 274 ARQPPDVELELEHVYGYNGCceygvlagkqylepipsVLTSNLFYTSTKEVVYATAAVGIVLN 336
                 5789***************889*************99899*********************98 PP

>> ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.5   0.0     0.071   1.8e+02      39      65 ..     435     461 ..     412     484 .. 0.84
   2 !   11.1   0.0   0.00015      0.39       8      66 ..     741     799 ..     734     805 .. 0.89
   3 !   18.5   0.0   7.1e-07    0.0018      16      90 ..     806     879 ..     803     881 .. 0.90

  Alignments for each domain:
  == domain 1  score: 2.5 bits;  conditional E-value: 0.071
  ANAPC4_WD40  39 sevrsLaWkpdgklLavaysdgevrll 65 
                    ++++++++dg+ L  a+ + +  ++
   KOO24272.1 435 MGIQAICFSEDGQRLITACRNPATTIF 461
                  5699***************99876665 PP

  == domain 2  score: 11.1 bits;  conditional E-value: 0.00015
  ANAPC4_WD40   8 DLiAlatedgellvfRlngqrvwtleedkedsevrsLaWkpdgklLavaysdgevrlld 66 
                   ++A a+e++++++   + + +++ +++ +++  ++ +++ dgk Lav+  dg + +++
   KOO24272.1 741 HIFASASESDKIYIWSADQKSMVGKPASLKGRAASCCEFRGDGKHLAVGSTDGCIFVFK 799
                  578999999999999999999999999**************************987765 PP

  == domain 3  score: 18.5 bits;  conditional E-value: 7.1e-07
  ANAPC4_WD40  16 dgellvfRlngqrvwtleedkedsevrsLaWkpdgklLavaysdgevrlldaesgkvvhslsvksek.avtclgWg 90 
                   ++l+++R++   +w l   +  s +++L+++pd + La a  + ++ l+d    + v+  +++ ++ +v  ++W+
   KOO24272.1 806 GEKLVLSRVDEMAIWPL--RDCTSAIQDLRYSPDLRTLAAASREQTIDLYDCAASTYVRLARCTGHSaTVLHIDWS 879
                  5899*************..78899******************************9999999887665478888887 PP

>> EF-hand_7  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.0   5.4e-06     0.014       3      68 ..     127     186 ..     125     188 .. 0.92
   2 !   13.4   0.0   3.2e-05     0.083      36      68 ..    1149    1181 ..    1121    1183 .. 0.83

  Alignments for each domain:
  == domain 1  score: 15.9 bits;  conditional E-value: 5.4e-06
   EF-hand_7   3 klkeaFkelDtdgdgyldkeellrllrkifqgagegsklsdeelellfkefDtdkdGvisfdEFlk 68 
                 +l +aF+ +D  ++g l  + ++r l+      + g+ +++ e ++lf++f +d   ++ ++ F +
  KOO24272.1 127 VLIRAFQTFDHERRGTLPLDAFRRCLE------CFGVTMTPAEGRALFRKFGQDAQKRLPYQVFTR 186
                 7889*******************9999......88999*******************999988765 PP

  == domain 2  score: 13.4 bits;  conditional E-value: 3.2e-05
   EF-hand_7   36 gegsklsdeelellfkefDtdkdGvisfdEFlk 68  
                   e++++ + ++e+l+ e++t++d++i++d F++
  KOO24272.1 1149 TENKVVEENQIEKLVAEVNTNSDREIDLDQFCN 1181
                  6778889999*********************96 PP

>> EF-hand_1  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.3   0.0     0.013        34       3      27 ..     129     153 ..     127     155 .. 0.90
   2 ?    5.6   0.0    0.0051        13       2      29 .]    1159    1186 ..    1158    1186 .. 0.86

  Alignments for each domain:
  == domain 1  score: 4.3 bits;  conditional E-value: 0.013
                 HHHHHHHTTTSSSEEEHHHHHHHHH CS
   EF-hand_1   3 keiFrefDkDgdGkIdfeEfkellk 27 
                  ++F+ fD  + G++ ++ f+++l+
  KOO24272.1 129 IRAFQTFDHERRGTLPLDAFRRCLE 153
                 689******************9986 PP

  == domain 2  score: 5.6 bits;  conditional E-value: 0.0051
                  HHHHHHHHTTTSSSEEEHHHHHHHHHHH CS
   EF-hand_1    2 lkeiFrefDkDgdGkIdfeEfkellkkl 29  
                  ++++ +e+ ++ d  Id+++f++ + k+
  KOO24272.1 1159 IEKLVAEVNTNSDREIDLDQFCNGWHKM 1186
                  5677788999*************99875 PP

>> IATP  Mitochondrial ATPase inhibitor, IATP
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.5   4.9    0.0021       5.3      28      81 ..    1194    1245 ..    1181    1247 .] 0.71

  Alignments for each domain:
  == domain 1  score: 7.5 bits;  conditional E-value: 0.0021
        IATP   28 mgEgdsGapkgtGggGsireagdafgkrEaAsEeeyirqrekekLaeLkeklae 81  
                   + g+ Ga k++GggG++++ + a  +   A+ e ++++ +++k++eL+ kl+ 
  KOO24272.1 1194 SSSGGGGALKSSGGGGALKSDS-ALLQDTIAKQEAALKE-QQKKIEELQAKLKA 1245
                  4557889999999999988776.4455556666666655.56688999888875 PP

>> SlyX  SlyX
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   0.2         6   1.5e+04       3      12 ..     101     110 ..     101     110 .. 0.88
   2 ?   11.7   2.2   0.00012       0.3      10      41 ..    1213    1244 ..    1210    1246 .. 0.90

  Alignments for each domain:
  == domain 1  score: -3.4 bits;  conditional E-value: 6
                 HHHHHHHHHH CS
        SlyX   3 erleeLEikl 12 
                 +rl+eLE+kl
  KOO24272.1 101 SRLVELEEKL 110
                 59*****997 PP

  == domain 2  score: 11.7 bits;  conditional E-value: 0.00012
                  HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
        SlyX   10 iklafqedtieeLndvvaeqqqqidrlqrqlr 41  
                  +  a ++dti +  +++ eqq++i++lq++l+
  KOO24272.1 1213 SDSALLQDTIAKQEAALKEQQKKIEELQAKLK 1244
                  567999***********************997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1247 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       732  (0.0408277); expected 358.6 (0.02)
Passed bias filter:                      620  (0.0345808); expected 358.6 (0.02)
Passed Vit filter:                        91  (0.00507558); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.91u 0.27s 00:00:01.18 Elapsed: 00:00:00.46
# Mc/sec: 8080.89
//
Query:       KOO24273.1  [L=378]
Description: hypothetical protein Ctob_006082 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.13   12.7   3.0         26    5.3   0.1    3.1  3  TBCC_N    Tubulin-specific chaperone C N-terminal domain


Domain annotation for each model (and alignments):
>> TBCC_N  Tubulin-specific chaperone C N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.4   0.0     0.012   2.1e+02      47      83 ..      23      57 ..      10      59 .. 0.79
   2 ?    3.8   0.1    0.0043        76      61      97 ..      70     106 ..      63     109 .. 0.90
   3 ?    5.3   0.1    0.0014        26      54     103 ..     219     268 ..     206     274 .. 0.81

  Alignments for each domain:
  == domain 1  score: 2.4 bits;  conditional E-value: 0.012
      TBCC_N 47 ellesveesadksklkqkldeita.eiqeLqkllaess 83
                ++l++++   ++++ +q+ld +++ ++ +L+ l+a+ss
  KOO24273.1 23 DSLNKFT---STNTAAQHLDTAASqALPHLDALIADSS 57
                5566666...899999***9887647899999999998 PP

  == domain 2  score: 3.8 bits;  conditional E-value: 0.0043
      TBCC_N  61 lkqkldeitaeiqeLqkllaessmfLpsYdlrsaqea 97 
                  +q + ++++++++ qk+++     L ++d+r  q++
  KOO24273.1  70 ARQYITDAQQSLASVQKFTTPLLAQLDDFDVRGKQNQ 106
                 56788999************************98886 PP

  == domain 3  score: 5.3 bits;  conditional E-value: 0.0014
      TBCC_N  54 esadksklkqkldeitaeiqeLqkllaessmfLpsYdlrsaqealskLke 103
                 +s+  ++l+++l ++ +++++L+k+++    + p+ d r+ q+ l++ + 
  KOO24273.1 219 DSSFVDDLQAQLTDADESFKQLEKIISGDLKMCPTDDARQLQALLKDVQP 268
                 55566789999999999999999999999999999999999998888775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (378 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       730  (0.0407162); expected 358.6 (0.02)
Passed bias filter:                      502  (0.0279993); expected 358.6 (0.02)
Passed Vit filter:                        49  (0.002733); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.25s 00:00:00.74 Elapsed: 00:00:00.41
# Mc/sec: 2794.90
//
Query:       KOO24274.1  [L=196]
Description: hypothetical protein Ctob_006083 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.6e-05   24.5   0.1    3.6e-05   24.0   0.1    1.2  1  DUF563    Protein of unknown function (DUF563)


Domain annotation for each model (and alignments):
>> DUF563  Protein of unknown function (DUF563)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.0   0.1     2e-09   3.6e-05     153     207 ..       4      66 ..       1      68 [. 0.83

  Alignments for each domain:
  == domain 1  score: 24.0 bits;  conditional E-value: 2e-09
      DUF563 153 ssakvivgphGsgltnliFmppg...ttvielvppnrldns.....fenlaallglkyayvlg 207
                 +s+  ++g hGsgl+ + F+p g   t+vie++p+ +   +     f  l+a lg++++ v++
  KOO24274.1   4 ASSAGLIGAHGSGLVWTTFLPAGsrpTAVIEMLPRTNSIYWsyaliFPDLCAPLGVRHWTVRA 66 
                 556669**************997677******877544444789***************9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (196 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       274  (0.0152825); expected 358.6 (0.02)
Passed bias filter:                      233  (0.0129957); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.24s 00:00:00.60 Elapsed: 00:00:00.38
# Mc/sec: 1555.76
//
Query:       KOO24275.1  [L=260]
Description: hypothetical protein Ctob_006079, partial [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
  ------ inclusion threshold ------
       0.28   11.9   2.4        1.6    9.4   0.1    2.5  2  Acyl-CoA_dh_N  Acyl-CoA dehydrogenase, N-terminal domain
        5.4    7.1  13.8          4    7.5   2.3    3.4  3  DUF2388        Protein of unknown function (DUF2388)


Domain annotation for each model (and alignments):
>> Acyl-CoA_dh_N  Acyl-CoA dehydrogenase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.7   0.2     0.043   3.8e+02      31      89 ..      17      77 ..       4      90 .. 0.76
   2 ?    9.4   0.1   0.00018       1.6      61     110 ..     119     168 ..     107     171 .. 0.75

  Alignments for each domain:
  == domain 1  score: 1.7 bits;  conditional E-value: 0.043
                   SGHHHH..HHHHHHTTCTSTTS-GGGTS--S-HHHHHHHHHHHHHH-HHHHHHHHHHHHTT CS
  Acyl-CoA_dh_N 31 efprel..wkklaelGllgitvpeeygGagldyleaaivaeelaradaglalllgvhsslv 89
                   +fpr +    k+a  G  g+++ ++  Ga +++++++  +  +  a +++a++   + ++v
     KOO24275.1 17 TFPRVVrtSAKAAVTGSRGVAIATKSMGAAAKAVSSVASVGAVKGAQVSVAIATKSGGMIV 77
                   5776544467778889999999999999999999999999999988888888665555555 PP

  == domain 2  score: 9.4 bits;  conditional E-value: 0.00018
                    HHHHHHHHHHHHHH-HHHHHHHHHHHHTTHHHHHHHS-HHHHHHHHHHHH CS
  Acyl-CoA_dh_N  61 yleaaivaeelaradaglalllgvhsslvapailrfGteeqkrryLpkla 110
                     ++aai++  l++  a+l + +g   s  a ++++++ ee  r+++pkl+
     KOO24275.1 119 QVSAAIATKGLGHKVASLLVRVGPPASRLALVVAAYAAEEAARKWVPKLL 168
                    57888999999986666555444444455569****************97 PP

>> DUF2388  Protein of unknown function (DUF2388)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.5   2.3   0.00045         4      26      47 ..      47      68 ..      23      71 .. 0.79
   2 ?    2.8   0.5     0.013   1.2e+02      28      48 ..      82     102 ..      79     105 .. 0.88
   3 ?    3.5   0.2    0.0079        71      30      47 ..     107     124 ..     105     127 .. 0.88

  Alignments for each domain:
  == domain 1  score: 7.5 bits;  conditional E-value: 0.00045
     DUF2388 26 dDAasFVASdGairGarLEaaL 47
                  A s VAS Ga++Ga++  a+
  KOO24275.1 47 AKAVSSVASVGAVKGAQVSVAI 68
                458999***********98776 PP

  == domain 2  score: 2.8 bits;  conditional E-value: 0.013
     DUF2388  28 AasFVASdGairGarLEaaLq 48 
                 A s + S Ga +Gar+ aa+ 
  KOO24275.1  82 AVSSITSLGAAKGARMSAAIA 102
                 678899************985 PP

  == domain 3  score: 3.5 bits;  conditional E-value: 0.0079
     DUF2388  30 sFVASdGairGarLEaaL 47 
                 s VAS Ga +G+++ aa+
  KOO24275.1 107 SSVASLGATKGVQVSAAI 124
                 569************997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (260 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       866  (0.0483016); expected 358.6 (0.02)
Passed bias filter:                      279  (0.0155614); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.44u 0.25s 00:00:00.69 Elapsed: 00:00:00.40
# Mc/sec: 1951.12
//
Query:       KOO24276.1  [L=259]
Description: chloroplast light harvesting protein isoform 12 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.2e-31  109.6   0.0    2.9e-31  109.2   0.0    1.2  1  Chloroa_b-bind  Chlorophyll A-B binding protein


Domain annotation for each model (and alignments):
>> Chloroa_b-bind  Chlorophyll A-B binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  109.2   0.0   1.6e-35   2.9e-31       3     158 ..      37     227 ..      35     230 .. 0.84

  Alignments for each domain:
  == domain 1  score: 109.2 bits;  conditional E-value: 1.6e-35
                     HHXXSXSTTXSX.BXTT-T.T-S................BSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH..........HTSSSCCCT--.TT CS
  Chloroa_b-bind   3 aeldgslpgdlg.fDplglskdp................etlkrlreaEliHGRvAMlavlGalvpelltk..........lsaassfaegpawa 70 
                     ++l  +l++ lg + plgl++d+                et+ ++r+aE++HGRvAM +++G+lv+ ++ +          +      ae+ a  
      KOO24276.1  37 KKLANELNPILGyWNPLGLADDNhmglgfqgnlwekdqaETIGWFRQAEIKHGRVAMFGFVGYLVQSAGVHwpwditpghpF------AEISA-- 123
                     5788889999**********9889*********************************************9977665433322......33222.. PP

                     TTTTS......SS-HHHHHH.HHHHHHHHHHHHHHHHHHSTTCSS-SSSSSSSSH..............CHHSTTSTT..TSHHHHHHHHHHHHH CS
  Chloroa_b-bind  71 eagkv......alsvptllalqillligflelareqelkapesegeeekrgypGg..............lgfdplgla.kkdeeekaelkekEik 144
                         +      +  +p+ + +qi+l++g++e++ e+  +  +++ +++++g+pG                +fdplg++ +k++e+ka+  + E++
      KOO24276.1 124 ----AggpgdqWDALPANAKWQIILFAGLMEIFGEAA-PRIDGTPHYMRGGKPGYfpslkkavphpvplDYFDPLGFSkNKTPEQKARGLLVELN 213
                     ....1223333556999999************84444.34444449********9*************978*****875899************* PP

                     HHHHHHHHHHHHHH CS
  Chloroa_b-bind 145 nGRlAMiaflgfvv 158
                     nGR+AM+++lg+++
      KOO24276.1 214 NGRAAMLGLLGCLS 227
                     ***********975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (259 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       305  (0.0170115); expected 358.6 (0.02)
Passed bias filter:                      287  (0.0160076); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.25s 00:00:00.65 Elapsed: 00:00:00.41
# Mc/sec: 1912.09
//
Query:       KOO24277.1  [L=246]
Description: glutathione s-transferase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.9e-13   49.4   0.0    5.8e-13   48.9   0.0    1.2  1  GST_C_3   Glutathione S-transferase, C-terminal domain
    3.7e-11   42.9   0.0      7e-11   42.0   0.0    1.5  1  GST_C_2   Glutathione S-transferase, C-terminal domain
    3.6e-09   36.9   0.0    9.3e-09   35.5   0.0    1.7  2  GST_N     Glutathione S-transferase, N-terminal domain
    4.1e-09   36.5   0.0    6.2e-09   36.0   0.0    1.3  1  GST_C     Glutathione S-transferase, C-terminal domain
    3.6e-05   24.1   0.0    6.8e-05   23.2   0.0    1.4  1  GST_N_3   Glutathione S-transferase, N-terminal domain
    0.00011   22.4   0.0    0.00041   20.6   0.0    1.9  2  GST_N_2   Glutathione S-transferase, N-terminal domain
     0.0074   16.1   0.0      0.012   15.4   0.0    1.3  1  GST_C_6   Glutathione S-transferase, C-terminal domain
  ------ inclusion threshold ------
      0.056   14.2   0.0        0.1   13.3   0.0    1.4  1  GST_N_4   Glutathione S-transferase N-terminal domain


Domain annotation for each model (and alignments):
>> GST_C_3  Glutathione S-transferase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.9   0.0   2.6e-16   5.8e-13      19      98 ..     158     243 ..     142     244 .. 0.90

  Alignments for each domain:
  == domain 1  score: 48.9 bits;  conditional E-value: 2.6e-16
                 HHHHHHHHHHHHCHHHHHHHHHHCHGTSSSSTTS--HHHHHHHHHHHHHHHH.......TCCCC-HHHHHHHHHHHTSHHHHHHHCT CS
     GST_C_3  19 ekkkefleerlpkflkyfekvlkkkgggylvgdklTyADlalfqvldgleea.......ealkkfpklkalyervearpkikaYles 98 
                 + +++f +e+lpk++++++k l+   gg+l+g + T+AD +l+ vl  + +        ++l+++p++ a+ +r+ a++++k++++ 
  KOO24277.1 158 AVRAKFCTEELPKYMGFLSKRLS-ASGGFLCGAEPTIADCSLVPVLARFISGgvdhvprDCLEPYPEVVAYLQRFMAIEAVKEWYAP 243
                 7799*******************.8899*********************9999999987777**********************975 PP

>> GST_C_2  Glutathione S-transferase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.0   0.0   3.1e-14     7e-11      10      69 .]     167     230 ..     149     230 .. 0.88

  Alignments for each domain:
  == domain 1  score: 42.0 bits;  conditional E-value: 3.1e-14
                 HCCHCHHHCTTT---SS..CTTCS--HHHHHHHHHHHHHHHHHHS-...---TT-HHHHHHHHH CS
     GST_C_2  10 qldaaldaleahLadsp.flfGdqptlaDialapflvrlraagpgf...direaypnlraWler 69 
                 +l + + +l+++L  s  fl+G++pt+aD++l p+l r+   g ++   d+ e yp ++a+l+r
  KOO24277.1 167 ELPKYMGFLSKRLSASGgFLCGAEPTIADCSLVPVLARFISGGVDHvprDCLEPYPEVVAYLQR 230
                 566777899******************************8888877666888***********8 PP

>> GST_N  Glutathione S-transferase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.5   0.0   4.1e-12   9.3e-09       2      75 ..      22      90 ..      21      91 .. 0.87
   2 ?   -2.6   0.0       3.2   7.2e+03       4      22 ..     138     156 ..     137     167 .. 0.75

  Alignments for each domain:
  == domain 1  score: 35.5 bits;  conditional E-value: 4.1e-12
                EEEEESSSTSHTHHHHHHHHHHTT-EEEEEEECSTTTCGGCHHHHHHCTT...S-SSEEEET.TEEEESHHHHHHHHH CS
       GST_N  2 vltlysirgsprahrirlllaakgveyevvpldfeageekspellklnpl...gkvPaLedn.gkkltESraIleYia 75
                +lt+++i g   a+++rl+l  +g+++e v++         +e+  ++     g++P++e++ gk++++S a l+Y+ 
  KOO24277.1 22 KLTYFNIQG--VAEKVRLALVLAGIPFEDVRVSN-------AEWGAMKLStpyGQLPLMEIDgGKPIAQSEAMLRYVG 90
                69*******..**********************4.......456555544444*******999*************96 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 3.2
                 EEESSSTSHTHHHHHHHHH CS
       GST_N   4 tlysirgsprahrirllla 22 
                 tly+++++ r   ++ ++ 
  KOO24277.1 138 TLYGYPPDFRGTEAHSAVV 156
                 7899999888887777765 PP

>> GST_C  Glutathione S-transferase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.0   0.0   2.8e-12   6.2e-09      28      92 ..     165     234 ..     145     235 .. 0.92

  Alignments for each domain:
  == domain 1  score: 36.0 bits;  conditional E-value: 2.8e-12
                 HHHHHHHHHHHHHHHH.TSSSSSTTSSCHHHHHHHHHHH.....HHHHHTTTTTTTTSHHHHHHHHHHHTS CS
       GST_C  28 lekvaevlsaleeelk.kqdylvGdkltlADialvpiln.....wlqrlglafgqekfpnlkawlerimar 92 
                  e++ ++  +l ++l+   ++l+G ++t+AD+ lvp+l      +++++  +++ e +p++ a+l+r+ma 
  KOO24277.1 165 TEELPKYMGFLSKRLSaSGGFLCGAEPTIADCSLVPVLArfisgGVDHVPRDCL-EPYPEVVAYLQRFMAI 234
                 6889999*********99********************9999999********9.**************96 PP

>> GST_N_3  Glutathione S-transferase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.2   0.0     3e-08   6.8e-05      10      70 ..      32      92 ..      25      97 .. 0.89

  Alignments for each domain:
  == domain 1  score: 23.2 bits;  conditional E-value: 3e-08
                HHHHHHHHHHHT--EEEE---TTTTHHHHHHH-TT--SSEEE.TTS-EEESHHHHHHHHHHH CS
     GST_N_3 10 arrvrlaLnekglpvevvevtpgehdeellaknplgkvPvLe.ddgealtdSlaIidyLeel 70
                a +vrlaL + g+p+e v v+  e   +++  +p+g++P +e d+g+ +  S+a+++y+ +l
  KOO24277.1 32 AEKVRLALVLAGIPFEDVRVSNAE-WGAMKLSTPYGQLPLMEiDGGKPIAQSEAMLRYVGSL 92
                78***************9998777.78899999********945599***********8766 PP

>> GST_N_2  Glutathione S-transferase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.6   0.0   1.8e-07   0.00041       5      69 ..      32      91 ..      30      92 .. 0.87
   2 ?   -1.2   0.0       1.2   2.6e+03      38      49 ..     177     202 ..     125     208 .. 0.62

  Alignments for each domain:
  == domain 1  score: 20.6 bits;  conditional E-value: 1.8e-07
                HHHHHHHHHHCT--EEEEEEH...-TTSHHHHHHHHCTTTSSSEEE-CTTEEEESHHHHHHHHHH CS
     GST_N_2  5 ahRvlialalkglediisvvvlepkgfekseefprlnprgtVPvLwdkdgqvineSseIlrylet 69
                a +v++al l g++++   v+  ++g  k       +p+g++P++ +++g++i+ S ++lry ++
  KOO24277.1 32 AEKVRLALVLAGIPFEDVRVSNAEWGAMK-----LSTPYGQLPLMEIDGGKPIAQSEAMLRYVGS 91
                89**************7778777777775.....356*************************876 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 1.2
                 HHHCTTT..............SSSEE CS
     GST_N_2  38 prlnprg..............tVPvL 49 
                 +rl+++g               VPvL
  KOO24277.1 177 KRLSASGgflcgaeptiadcsLVPVL 202
                 34444436677777777777678888 PP

>> GST_C_6  Glutathione S-transferase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.0   5.4e-06     0.012       7      63 ..     174     230 ..     170     231 .. 0.90

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 5.4e-06
     GST_C_6   7 aLselL.gdkkyFfGdkPtslDAlvFGhlaqilytplespelrellkeypNLvaycer 63 
                  Ls++L ++  ++ G +Pt +D+++  +la ++   ++    r++l+ yp  vay +r
  KOO24277.1 174 FLSKRLsASGGFLCGAEPTIADCSLVPVLARFISGGVDHV-PRDCLEPYPEVVAYLQR 230
                 6999**76889****88***************99987766.**************999 PP

>> GST_N_4  Glutathione S-transferase N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.0   4.6e-05       0.1       5      55 ..      34      89 ..      32      98 .. 0.80

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 4.6e-05
     GST_N_4  5 kletyLrmagipyelepssn.e...m.haspkgklPfiel.ngelliadsefiiefl 55
                k+   L +agip+e + +sn e   m  + p g+lP +e+ +g+ +ia se +++++
  KOO24277.1 34 KVRLALVLAGIPFEDVRVSNaEwgaMkLSTPYGQLPLMEIdGGK-PIAQSEAMLRYV 89
                6777788999999877777654324566789*********6677.********9997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (246 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       244  (0.0136092); expected 358.6 (0.02)
Passed bias filter:                      241  (0.0134419); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.38u 0.25s 00:00:00.63 Elapsed: 00:00:00.39
# Mc/sec: 1913.32
//
Query:       KOO24278.1  [L=170]
Description: hypothetical protein Ctob_003108, partial [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (170 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       448  (0.0249875); expected 358.6 (0.02)
Passed bias filter:                      259  (0.0144459); expected 358.6 (0.02)
Passed Vit filter:                         6  (0.000334653); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.25s 00:00:00.63 Elapsed: 00:00:00.40
# Mc/sec: 1275.04
//
Query:       KOO24279.1  [L=444]
Description: cyclase family protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.3e-20   74.0   0.0    1.8e-20   73.6   0.0    1.4  1  Cyclase    Putative cyclase
    1.4e-08   35.0   0.0      4e-08   33.5   0.0    1.7  1  HAD_2      Haloacid dehalogenase-like hydrolase
    1.5e-08   35.2   0.3    3.7e-07   30.6   0.3    2.2  1  Hydrolase  haloacid dehalogenase-like hydrolase
    7.7e-05   23.2   0.1    0.00026   21.4   0.1    1.9  1  HAD        haloacid dehalogenase-like hydrolase


Domain annotation for each model (and alignments):
>> Cyclase  Putative cyclase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   73.6   0.0   3.9e-24   1.8e-20      17     135 ..     229     383 ..     114     384 .. 0.84

  Alignments for each domain:
  == domain 1  score: 73.6 bits;  conditional E-value: 3.9e-24
     Cyclase  17 p..........islsehtGTHlDapgHfae..ktidelpleelvg.pavvldvsak....aaa.edyeiitaedleaalakqgveikpgdivlirTgws 97 
                 +          ++l+  +GTH+Dap+Hf++  +t+d l  eel + p++v++v  +    aaa ed   +  e + a +a +g +++ g++v+irTgw 
  KOO24279.1 229 TshpfcrskqsFTLNGGSGTHIDAPAHFVAggRTVDGLGTEELAArPLAVISVPLAvvaaAAAgEDV-CVGLEVILADEALHG-QVPYGAFVCIRTGWA 325
                 03345555566999**************99999**99999999988999999944455432334555.68*************.**************9 PP

     Cyclase  98 krl.edkekyrn..................pglseeaaewlaekg.vkavGvDtlsvD 135
                 + + +d ++y n                  pg+se+aa +l++ +  +++GvDtls D
  KOO24279.1 326 ADRyADASRYLNapdtaridpsiglprmayPGVSEAAASFLISARgAVGLGVDTLSPD 383
                 988877788844478889999999999999*************988**********98 PP

>> HAD_2  Haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.5   0.0   8.9e-12     4e-08       3     178 .]       9     200 ..       7     200 .. 0.83

  Alignments for each domain:
  == domain 1  score: 33.5 bits;  conditional E-value: 8.9e-12
       HAD_2   3 FDlDgTlldteeliiqafnelleey................glselseeelrkliglslrellrklgeseeeee......kieellrkyneekkk..ke 77 
                 FD+D+Tll +e + +q+++e+++ y                 +  ++   ++ + g     + r +++see++       + +++     + ++    +
  KOO24279.1   9 FDFDNTLLLSEHTKFQTMREVVAPYegglavletvphdsrtAPAGVKVTRYSIFEGVARGLIERGSAPSEETDAvtfgakMCDTF----STVLQGrlLT 103
                 *************************999999999999888644466666666666666655556666665555588666444444....4444433335 PP

       HAD_2  78 vkpydgvkelLeeLkeagyklgivTsksreaveekleqlgiesyFdvivtsedvekkKPdpeviekaleklklkkeeviyvGDsptDieaakkagikvi 176
                  + ++g+  lL  L+++g+ + + T   +e ++e +++lg+   F +++++  ++ +    ++++    +  + ++e + vGD  +D +aa+ +g+ +i
  KOO24279.1 104 AQEVPGATALLAHLTAHGVPCYVNTATPQEPIDELIDALGWRPRFRKVLGAPGTKVE----NLMAVSTAEGLVAPAELVHVGDGDNDCKAARDFGCPFI 198
                 99*************************************************999988....88999999999*************************99 PP

       HAD_2 177 av 178
                 ++
  KOO24279.1 199 GI 200
                 85 PP

>> Hydrolase  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.6   0.3   8.3e-11   3.7e-07       2     210 .]       5     194 ..       4     194 .. 0.62

  Alignments for each domain:
  == domain 1  score: 30.6 bits;  conditional E-value: 8.3e-11
                 SEEEEESBTTTBCHHHHHHHHHHHHCHHHHHHHHHHHHCHHHHHHHHHHHHH......HHHHHHHHHETTTEHHHHTHHHHHHHHHCHHHHHHHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx......xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   Hydrolase   2 ktvvfDkdGTLttgepsvedvivsaalalaaaletgsehpigkalvaaakar......sgaltgfatfigrgayaigkpewltaldippdlgaaigsaq 94 
                 ++v fD+d+TL+ +e+   ++++++          +++   g a+ +   +       + ++t++  f+g   +a+g  e   a   +++ +a +  a 
  KOO24279.1   5 RAVSFDFDNTLLLSEHTKFQTMREV----------VAPYEGGLAVLETVPHDsrtapaGVKVTRYSIFEG---VARGLIERGSAP--SEETDAVTFGAK 88 
                 5788999999999998888888888..........33333333332222222333322333333333332...223333322222..222222233333 PP

                 HHCHHHHHHTTHHHHHHHHHHTHHBHTTHHHHHHHHHHTTEEEEEEESSEHHHHHHHHHHTT.GGGESEEEEHHCES..STTTSHHHHHHHHHHHTSTG CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxx RF
   Hydrolase  95 sqgrtvallqaralavftiadplkvkpeaaeavasLkaagievvlltgdnpetaeraanqlG.ddyfdaviasdiet..vakpspegkvaaireLqgkp 190
                   +  + +l     + +  a+     p+a  ++a+L a g++ ++ t   +e+ +++++ lG +  f  v+     +    k++  + v +++ L + p
  KOO24279.1  89 MCDTFSTVL----QGRLLTAQ---EVPGATALLAHLTAHGVPCYVNTATPQEPIDELIDALGwRPRFRKVL-----GapGTKVENLMAVSTAEGL-VAP 174
                 333333333....33333333...58************************************766663333.....2445678899999999999.9** PP

                 GGEEEEESSHHHHHHHHHTT CS
                 xxxxxxxxxxxxxxxxxxxx RF
   Hydrolase 191 eevamVGDgvnDaaalaaAg 210
                 +e ++VGDg nD +a++  g
  KOO24279.1 175 AELVHVGDGDNDCKAARDFG 194
                 ***************99765 PP

>> HAD  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.4   0.1   5.9e-08   0.00026       3     188 .]       9     191 ..       7     191 .. 0.55

  Alignments for each domain:
  == domain 1  score: 21.4 bits;  conditional E-value: 5.9e-08
         HAD   3 fDfDgTLldgdsle.lllrfllrrgaprlwralreklllal.................frellrldraglaelleallagls.eelaaelerfvaevir 82 
                 fDfD TLl ++      +r  +  + +  ++ l+  ++ ++                 +        +gl e  +a  +  +   + a +++ + +v +
  KOO24279.1   9 FDFDNTLLLSEHTKfQTMR-EVVAPYEGGLAVLETVPHDSRtapagvkvtrysifegvA--------RGLIERGSAPSEETDaVTFGAKMCDTFSTVLQ 98 
                 9******999555534444.333333333444444455555566666666333334432........33333344433333333444444444444444 PP

         HAD  83 pkl.....ldpgalellaahraaGdrvvvvSgglrplvepllaelgadevlatelevddrltgelglegkpvrgegkvaalrewlaaegegidleevva 176
                  +l       pga +lla+  a G++++v ++++++ + +l ++lg             r+ + lg +g+ v     + a+     aeg   +++e+v 
  KOO24279.1  99 GRLltaqeV-PGATALLAHLTAHGVPCYVNTATPQEPIDELIDALG----WRP------RFRKVLGAPGTKVEN---LMAVST---AEG-LVAPAELVH 179
                 442121214.7*******777*************************....666......666665555555555...222222...222.223334566 PP

         HAD 177 yGDspsDlpllr 188
                 +GD+ +D +++r
  KOO24279.1 180 VGDGDNDCKAAR 191
                 677777777665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (444 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       224  (0.0124937); expected 358.6 (0.02)
Passed bias filter:                      186  (0.0103743); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.52u 0.25s 00:00:00.77 Elapsed: 00:00:00.43
# Mc/sec: 3122.70
//
Query:       KOO24280.1  [L=598]
Description: mannosyl-oligosaccharide glucosidase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.7e-94  316.7   0.0    1.6e-61  208.6   0.0    2.0  2  Glyco_hydro_63   Glycosyl hydrolase family 63 C-terminal doma
    1.5e-31  110.2   0.0    2.3e-30  106.4   0.0    2.2  2  Glyco_hydro_63N  Glycosyl hydrolase family 63 N-terminal doma
     0.0047   15.9   0.1     0.0078   15.2   0.1    1.3  1  GDE_C            Amylo-alpha-1,6-glucosidase
     0.0058   15.5   0.4       0.34    9.7   0.0    2.1  2  Trehalase        Trehalase


Domain annotation for each model (and alignments):
>> Glyco_hydro_63  Glycosyl hydrolase family 63 C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  106.1   0.0   4.1e-34   1.8e-30     208     318 ..     274     383 ..     268     411 .. 0.90
   2 !  208.6   0.0   3.6e-65   1.6e-61     333     490 ..     438     595 ..     421     596 .. 0.96

  Alignments for each domain:
  == domain 1  score: 106.1 bits;  conditional E-value: 4.1e-34
                     B---STTB--TT--SS.......--GGGS-TTS---SS--TT-B-HHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHHTTEETTT CS
  Glyco_hydro_63 208 kGkleetyrWrGRdatakrelnpktLasGlDDyPRashpseaelhvDlrsWvalaakslksiaellgeeeekekyaktekelsenleklhwseee 302
                     +G+++ ++rWrGRda+ +r ln  tL+sGlDDyPRas  s+ e+hvDl+sWva++++ l+++   lg+++e+  y+ + ++  e+l+ lhw+ ++
      KOO24280.1 274 AGEVDGSFRWRGRDAN-DRRLNAMTLSSGLDDYPRASTVSNIERHVDLHSWVAFFTRLLARLGARLGKSDEAGAYEAQFEAQLEALSALHWDRSR 367
                     699************9.9***************************************************************************** PP

                     TEE-EEEE-T...... CS
  Glyco_hydro_63 303 kayaDlgvhtekvklk 318
                     kay+D+g h ++  ++
      KOO24280.1 368 KAYLDWGEHANDGDFR 383
                     *********9876655 PP

  == domain 2  score: 208.6 bits;  conditional E-value: 3.6e-65
                     .TTSS-EEEE---BHHHHHHHHTT-S-TT-THHHHHHHHHH-TTTTEETTEEBSB-TTSTTTT-.....TT-SSSS-B-HHHHHHHHHHHHHH-- CS
  Glyco_hydro_63 333 veeepelqlvealGYvslfPlllklldadsekleklldlikdpeelwsdyGlrslskksslygkrntehdenYWrgpiWininylilsalkhysk 427
                      ++ p+ q+v  lGYvslfPlll+ll++d+++l +ll+l++dp +lws++Glrsls+++  yg++n+  d++YWrgpiW+n+nyl+l +l+hy  
      KOO24280.1 438 PRTPPKPQFVARLGYVSLFPLLLRLLPPDAPQLPSLLHLLRDPASLWSPHGLRSLSREDAWYGRENAPGDAPYWRGPIWVNLNYLALAGLHHYGA 532
                     4778999**************************************************************************************** PP

                     -SS-.--HHHHHHHHHHHHHHHHHHHHHHHTSS--SEE-TTT--EESSSS-TTGGGGHHHHHH CS
  Glyco_hydro_63 428 vegpykekakeiykeLrsnlvnnivkqyketGfvweqYddktGkgkgakeFtGWtslvvlima 490
                     ++gp +e+a+++y+eLr nlv  ++ ++++tG++weqYd++tG+g+++++F+GW+sl +l +a
      KOO24280.1 533 TPGPSQERAAQLYTELRDNLVGTMIAEWERTGYLWEQYDPETGRGQRTHPFNGWSSLALLALA 595
                     *********************************************************999876 PP

>> Glyco_hydro_63N  Glycosyl hydrolase family 63 N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  106.4   0.0   5.2e-34   2.3e-30       1     168 [.      91     263 ..      91     299 .. 0.77
   2 ?    1.3   0.1     0.071   3.2e+02      53      68 ..     563     578 ..     545     582 .. 0.85

  Alignments for each domain:
  == domain 1  score: 106.4 bits;  conditional E-value: 5.2e-34
  Glyco_hydro_63N   1 SLlWGpYrpnlYfGlrpRi.pkslltGLmWfkvddyasvqkklrhtceqgdglkkygWeeyDgrtgGkqtikDkennldlttsfvKvkdgegGs 93 
                      SL WG+Yrp++YfGlr+ + p  l++GLmW+     +++   lrh+ceq dgl++yg+  +Dgr +G q i D++ +++l+tsfv +++     
       KOO24280.1  91 SLRWGTYRPGVYFGLRSLTaPTALTAGLMWA----ADGLP--LRHQCEQ-DGLERYGFMAHDGRGYGAQPIVDEAHGVELHTSFVATSTS---G 174
                      899**************886999*******8....47888..9****98.78*********************************95544...6 PP

  Glyco_hydro_63N  94 Wavrvkgkpredak......kaktsvvfYiglege..........gsleleeedekgl......egdvkleGeskelgefkleitegpktnkhp 165
                      Wavr+++++  ++       ++ +s++fY++ + e          gsle +             eg  +l+G+ +++g f+l  + +    ++p
       KOO24280.1 175 WAVRLEATVASGRAskatppSRPLSLYFYAAVDAElapagaadggGSLERR------PpsffqpEGAARLHGTIDDVGTFTLFAEAT--LGASP 260
                      ******99988433345567999**********766666666644444444......0333455899***************98884..33333 PP

  Glyco_hydro_63N 166 esn 168
                      + +
       KOO24280.1 261 TAD 263
                      222 PP

  == domain 2  score: 1.3 bits;  conditional E-value: 0.071
  Glyco_hydro_63N  53 kkygWeeyDgrtgGkq 68 
                      ++y We+yD+ tg  q
       KOO24280.1 563 TGYLWEQYDPETGRGQ 578
                      68********998655 PP

>> GDE_C  Amylo-alpha-1,6-glucosidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.1   1.7e-06    0.0078     271     380 ..     482     590 ..     471     593 .. 0.77

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 1.7e-06
       GDE_C 271 eLltplGlktLdpedpeYkgnYdgsedsrdaaYHqGtvWvwllgsyveallkfgeklgkskealeevkalLeglekhleeagl...gslsElfdgdael 366
                 +L  p Gl++L++ed      Y+ ++   da Y  G++Wv l    +  l++ g + g+s+e  +++++ L++     + a++   g l E +d ++  
  KOO24280.1 482 SLWSPHGLRSLSREDAW----YGRENAPGDAPYWRGPIWVNLNYLALAGLHHYGATPGPSQERAAQLYTELRDNLVGTMIAEWertGYLWEQYDPETGR 576
                 6999**********975....57788899***********99999999999999999999999999998888765544444441115566777766666 PP

       GDE_C 367 lpkgciaQAWSvae 380
                  ++  ++  WS+ +
  KOO24280.1 577 GQRTHPFNGWSSLA 590
                 66777777887655 PP

>> Trehalase  Trehalase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.7   0.0   7.5e-05      0.34     290     362 ..     301     373 ..     283     386 .. 0.84
   2 !    4.0   0.1    0.0041        18     431     480 ..     516     574 ..     506     586 .. 0.83

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 7.5e-05
                 TT-S.TCCCCTGGGEE-HHHHHHHHHHHHHHHHCCCHCC-CCHHHHHHHHHHHHHHHHHHHCEETTTTEE--E CS
   Trehalase 290 ghdtgellelrtaklvpvDLNallyklekdiaefedklgdsetseefeekaekrkkaidkvLWneeagvylDY 362
                 g d+  +++++      vDL + +    + +a++ ++lg+s ++  +e++ e++ +a+ +  W+  +++ylD+
  KOO24280.1 301 GLDDYPRASTVSNIERHVDLHSWVAFFTRLLARLGARLGKSDEAGAYEAQFEAQLEALSALHWDRSRKAYLDW 373
                 55555555555555567*******************************************************8 PP

  == domain 2  score: 4.0 bits;  conditional E-value: 0.0041
                 EHHHHHHHHHHHHHTT-.........HHHHHHHHHHHHHHHHHHHHHCTSEBSCEETTS CS
   Trehalase 431 WaPlqilavegleryge.........eelaerlaerwlktvtkafsdegklvEKYdvtr 480
                 W  l +la+ gl++yg           +l  +l  +++ t+ + ++++g l E Yd ++
  KOO24280.1 516 WVNLNYLALAGLHHYGAtpgpsqeraAQLYTELRDNLVGTMIAEWERTGYLWEQYDPET 574
                 88899***********999999665556666788899******************9775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (598 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       312  (0.017402); expected 358.6 (0.02)
Passed bias filter:                      246  (0.0137208); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.53u 0.27s 00:00:00.80 Elapsed: 00:00:00.41
# Mc/sec: 4400.38
//
Query:       KOO24281.1  [L=235]
Description: cd4-specific ankyrin repeat protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.2e-13   49.1   0.4    3.6e-07   30.7   0.0    2.8  3  Ank_2     Ankyrin repeats (3 copies)
    3.9e-10   39.8   0.2    0.00079   19.7   0.0    4.0  5  Ank_5     Ankyrin repeats (many copies)
      8e-09   35.9   0.2    8.4e-06   26.2   0.0    3.4  4  Ank_4     Ankyrin repeats (many copies)
      2e-08   33.8   0.7     0.0052   17.2   0.0    4.7  4  Ank_3     Ankyrin repeat
    6.8e-06   26.3   7.0     0.0025   18.2   0.0    4.4  5  Ank       Ankyrin repeat


Domain annotation for each model (and alignments):
>> Ank_2  Ankyrin repeats (3 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.7   0.0     1e-10   3.6e-07      29      82 ..      10      69 ..       7      70 .. 0.88
   2 !   15.3   0.0   6.1e-06     0.022      26      73 ..      73     128 ..      69     136 .. 0.78
   3 ?    2.2   0.1     0.079   2.8e+02      33      59 ..     115     140 ..     114     179 .. 0.54

  Alignments for each domain:
  == domain 1  score: 30.7 bits;  conditional E-value: 1e-10
       Ank_2 29 aLhyAakngnleivklLleh......adndgrtpLhyAarsghleivklLlekgadinlk 82
                +L  Aa++g++  v+ Ll++      +d++g+++L++ + ++hle++ +Lle gad+n+ 
  KOO24281.1 10 PLLDAARRGDTAKVRRLLAEgagidqIDKYGKSALMLVSIYNHLETASVLLEDGADVNQA 69
                77789****9988*99999677866777**********99*****************986 PP

  == domain 2  score: 15.3 bits;  conditional E-value: 6.1e-06
       Ank_2  26 gktaLhyAakngnleivklLleh........adndgrtpLhyAarsghleivklLl 73 
                 g  ++ +A+++gnl++v+lL ++         d++  t+  +A r gh+ +  +L+
  KOO24281.1  73 GFAPMSAACIGGNLDMVQLLSSYgaartftnRDRTKCTAEELATRTGHTALTAWLV 128
                 5568889**************97777777444477889999999999988877777 PP

  == domain 3  score: 2.2 bits;  conditional E-value: 0.079
       Ank_2  33 AakngnleivklLlehadndgrtpLhy 59 
                 A++ g++ +  +L+  ++ + +tpLh+
  KOO24281.1 115 ATRTGHTALTAWLVTSTR-KWTTPLHH 140
                 455555555555553322.22355542 PP

>> Ank_5  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.7   0.0   0.00014       0.5      19      53 ..      10      44 ..       7      47 .. 0.93
   2 !   19.7   0.0   2.2e-07   0.00079       1      53 [.      26      77 ..      26      80 .. 0.86
   3 !   19.5   0.0   2.5e-07    0.0009       1      47 [.      59     104 ..      59     108 .. 0.91
   4 ?    1.8   0.1     0.088   3.2e+02      11      22 ..     129     140 ..     124     141 .. 0.82
   5 ?   -2.7   0.0       2.3   8.4e+03      39      56 .]     156     174 ..     151     174 .. 0.58

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00014
       Ank_5 19 pLhvAakygaadvvrlLlargadlnltdsrGltal 53
                pL  Aa++g    vr+Lla+ga +++ d++G++al
  KOO24281.1 10 PLLDAARRGDTAKVRRLLAEGAGIDQIDKYGKSAL 44
                6778***************************9998 PP

  == domain 2  score: 19.7 bits;  conditional E-value: 2.2e-07
       Ank_5  1 Llehg.padvnrldgggntpLhvAakygaadvvrlLlargadlnltdsrGltal 53
                Ll++g  +d  ++ g+  ++L++ + y++++ + +Ll+ gad n+ +s+G  ++
  KOO24281.1 26 LLAEGaGIDQIDKYGK--SALMLVSIYNHLETASVLLEDGADVNQANSWGFAPM 77
                7888866666555555..********************************9887 PP

  == domain 3  score: 19.5 bits;  conditional E-value: 2.5e-07
       Ank_5   1 LlehgpadvnrldgggntpLhvAakygaadvvrlLlargadlnltds 47 
                 Lle g advn  + +g+ p+  A+ +g++d+v+lL  +ga+++ t+ 
  KOO24281.1  59 LLEDG-ADVNQANSWGFAPMSAACIGGNLDMVQLLSSYGAARTFTNR 104
                 89999.*****************************988888876665 PP

  == domain 4  score: 1.8 bits;  conditional E-value: 0.088
       Ank_5  11 rldgggntpLhv 22 
                 ++ ++++tpLh+
  KOO24281.1 129 TSTRKWTTPLHH 140
                 5678999****6 PP

  == domain 5  score: -2.7 bits;  conditional E-value: 2.3
       Ank_5  39 gadlnltdsrG.ltaldlA 56 
                 ga++ + ++ G +t+l lA
  KOO24281.1 156 GASILAATAPGdPTPLSLA 174
                 5555555555667777766 PP

>> Ank_4  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.5   0.0    0.0035        13       4      42 ..      10      47 ..       8      52 .. 0.84
   2 !   26.2   0.0   2.3e-09   8.4e-06      10      54 ..      49      92 ..      44      93 .. 0.93
   3 !   12.3   0.0   5.6e-05       0.2       5      55 .]      77     128 ..      75     128 .. 0.84
   4 ?   -1.2   0.0      0.95   3.4e+03      32      41 ..     131     140 ..     118     141 .. 0.65

  Alignments for each domain:
  == domain 1  score: 6.5 bits;  conditional E-value: 0.0035
       Ank_4  4 aLhyaaisgrlelvrlLlekgadinaqdnrsGetalhiA 42
                +L  aa  g++  vr+Ll+ ga i+   +++G +al  +
  KOO24281.1 10 PLLDAARRGDTAKVRRLLAEGAGIDQI-DKYGKSALMLV 47
                6888999***********988877786.*******9876 PP

  == domain 2  score: 26.2 bits;  conditional E-value: 2.3e-09
       Ank_4 10 isgrlelvrlLlekgadinaqdnrsGetalhiAakrgnveilklL 54
                i+++le++  Lle gad+n   n+ G+ ++  A+ +gn+++++lL
  KOO24281.1 49 IYNHLETASVLLEDGADVNQA-NSWGFAPMSAACIGGNLDMVQLL 92
                489*****************8.*********************98 PP

  == domain 3  score: 12.3 bits;  conditional E-value: 5.6e-05
       Ank_4   5 LhyaaisgrlelvrlLlekgad..inaqdnrsGetalhiAakrgnveilklLl 55 
                 + +a+i g+l++v+lL ++ga      + +r   ta   A ++g+   + +L+
  KOO24281.1  77 MSAACIGGNLDMVQLLSSYGAArtFTNR-DRTKCTAEELATRTGHTALTAWLV 128
                 6789***************987565555.666999999999999999999985 PP

  == domain 4  score: -1.2 bits;  conditional E-value: 0.95
       Ank_4  32 nrsGetalhi 41 
                  r   t+lh+
  KOO24281.1 131 TRKWTTPLHH 140
                 4666788885 PP

>> Ank_3  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.2   0.0      0.11     4e+02       9      30 ..      14      34 ..       8      35 .. 0.82
   2 !   17.2   0.0   1.4e-06    0.0052       1      30 [.      39      67 ..      39      68 .. 0.96
   3 !    6.6   0.0    0.0041        15       5      27 ..      76      97 ..      72      99 .. 0.86
   4 ?    2.3   0.1       0.1   3.6e+02       4      29 ..     136     159 ..     136     161 .. 0.79

  Alignments for each domain:
  == domain 1  score: 2.2 bits;  conditional E-value: 0.11
       Ank_3  9 AarsgnleivkfLlenkgadvn 30
                Aar g+++ v+ Ll   ga ++
  KOO24281.1 14 AARRGDTAKVRRLLA-EGAGID 34
                99*****88*****9.688775 PP

  == domain 2  score: 17.2 bits;  conditional E-value: 1.4e-06
       Ank_3  1 nGetpLhlAarsgnleivkfLlenkgadvn 30
                +G ++L+l+  +++le +  Lle  gadvn
  KOO24281.1 39 YGKSALMLVSIYNHLETASVLLE-DGADVN 67
                699********************.9****9 PP

  == domain 3  score: 6.6 bits;  conditional E-value: 0.0041
       Ank_3  5 pLhlAarsgnleivkfLlenkga 27
                p+  A+  gnl++v++L   +ga
  KOO24281.1 76 PMSAACIGGNLDMVQLLSS-YGA 97
                7889************999.887 PP

  == domain 4  score: 2.3 bits;  conditional E-value: 0.1
       Ank_3   4 tpLhlAarsgnleivkfLlenkgadv 29 
                 tpLh+         +++Ll+ kga +
  KOO24281.1 136 TPLHHLTIIPAAR-AHALLR-KGASI 159
                 7888777777776.999999.89987 PP

>> Ank  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.0       1.7     6e+03       9      30 ..      14      36 ..      10      38 .. 0.56
   2 !   18.2   0.0   6.9e-07    0.0025       1      31 [.      39      70 ..      39      71 .. 0.92
   3 ?    3.7   0.0     0.027        98       5      25 ..      76      97 ..      72     103 .. 0.70
   4 ?    4.0   1.6     0.021        75       4      29 ..     136     161 ..     135     164 .. 0.71
   5 ?   -2.2   0.0       1.9   6.8e+03       4       9 ..     169     174 ..     169     194 .. 0.66

  Alignments for each domain:
  == domain 1  score: -2.0 bits;  conditional E-value: 1.7
                HHHHTTHHHHHHHH.TTTSTTCB CS
         Ank  9 AatngkkriiklLL.hGAnlnal 30
                Aa++g++  ++ LL  GA +++ 
  KOO24281.1 14 AARRGDTAKVRRLLaEGAGIDQI 36
                55555433355578667766655 PP

  == domain 2  score: 18.2 bits;  conditional E-value: 6.9e-07
                TSBBHHHHHHHHTTHHHHHHHH.TTTSTTCBT CS
         Ank  1 dGnTPLHlAatngkkriiklLL.hGAnlnald 31
                +G ++L+l + +++++ ++ LL +GA++n+ +
  KOO24281.1 39 YGKSALMLVSIYNHLETASVLLeDGADVNQAN 70
                699****98899**********99*****976 PP

  == domain 3  score: 3.7 bits;  conditional E-value: 0.027
                HHHHHHHHTTHHHHHHHH..TTT CS
         Ank  5 PLHlAatngkkriiklLL..hGA 25
                P   A+ +g++++++l L  +GA
  KOO24281.1 76 PMSAACIGGNLDMVQL-LssYGA 97
                5556777888*****5.544464 PP

  == domain 4  score: 4.0 bits;  conditional E-value: 0.021
                 BHHH.H....HHHHTTHHHHHHHH.TTTSTTC CS
         Ank   4 TPLH.l....AatngkkriiklLL.hGAnlna 29 
                 TPLH l    Aa       +++LL +GA++ a
  KOO24281.1 136 TPLHhLtiipAA------RAHALLrKGASILA 161
                 9***53555333......99999988999865 PP

  == domain 5  score: -2.2 bits;  conditional E-value: 1.9
                 BHHHHH CS
         Ank   4 TPLHlA 9  
                 TPL lA
  KOO24281.1 169 TPLSLA 174
                 899986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (235 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       328  (0.0182944); expected 358.6 (0.02)
Passed bias filter:                      253  (0.0141112); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.41u 0.25s 00:00:00.65 Elapsed: 00:00:00.40
# Mc/sec: 1775.86
//
Query:       KOO24282.1  [L=125]
Description: hypothetical protein Ctob_003114 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (125 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       418  (0.0233142); expected 358.6 (0.02)
Passed bias filter:                      274  (0.0152825); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.23s 00:00:00.59 Elapsed: 00:00:00.37
# Mc/sec: 1014.91
//
Query:       KOO24283.1  [L=176]
Description: hypothetical protein Ctob_003117 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (176 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       305  (0.0170115); expected 358.6 (0.02)
Passed bias filter:                      244  (0.0136092); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.25s 00:00:00.62 Elapsed: 00:00:00.40
# Mc/sec: 1310.45
//
Query:       KOO24284.1  [L=291]
Description: glutaminase a [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.4e-40  137.3   0.4    4.3e-39  134.6   0.4    1.9  2  DUF1793   Domain of unknown function (DUF1793)
    1.1e-08   34.9   0.0    2.4e-08   33.8   0.0    1.5  1  DUF4965   Domain of unknown function (DUF4965)
  ------ inclusion threshold ------
       0.12   12.3   3.1        1.7    8.6   0.9    2.4  2  SPDY      Domain of unknown function (DUF317)


Domain annotation for each model (and alignments):
>> DUF1793  Domain of unknown function (DUF1793)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.4   0.0      0.13     8e+02       2      22 ..      80     100 ..      79     103 .. 0.88
   2 !  134.6   0.4   7.2e-43   4.3e-39      20     165 ..     132     289 ..     125     290 .. 0.90

  Alignments for each domain:
  == domain 1  score: 0.4 bits;  conditional E-value: 0.13
     DUF1793   2 GikAmseiaellgeeedakky 22 
                 +i+A++e++++++ +++++++
  KOO24284.1  80 AIRAFAELCTIMQLDDESRQF 100
                 8***********999998877 PP

  == domain 2  score: 134.6 bits;  conditional E-value: 7.2e-43
     DUF1793  20 kkysaiaeeyikkweelai..dg..thlklaYdk...edswsllYnlyaDkllgl..nlvpqsvyemqsafYktvaqkyGlplDsrhtytksdWelfaa 109
                 ++y++ia++y+++w+ +a+  +g  +h++++++    +dswsl+Ynl++++ll l   +  + ++  ++a+Y ++a+++G plD rh+ytk+dW  ++a
  KOO24284.1 132 AEYASIAADYASTWQLYAFnaTGqpPHYSMSFNVdeyQDSWSLKYNLLWQRLLRLdgPFDYDAIAALETAYYLEQANEFGTPLDPRHQYTKADWLSWVA 230
                 58*****************6522667*****98655789**************9954588899************************************ PP

     DUF1793 110 avask.ktreelissvakwvnetktdrpftdlYdtegtgglpg...frarpvvGGhFalL 165
                 a++ + +  ++l+s++ +++n+t++++pftdlYdt  +g+l+    f+arpvvG++Fa+L
  KOO24284.1 231 AMSPDeARWHALFSPIFEVLNTTSSRAPFTDLYDT-ISGELAIngaFIARPVVGALFAKL 289
                 *****666699***********************9.688876678*************98 PP

>> DUF4965  Domain of unknown function (DUF4965)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.8   0.0     4e-12   2.4e-08     105     149 ..      26      73 ..      16      79 .. 0.90

  Alignments for each domain:
  == domain 1  score: 33.8 bits;  conditional E-value: 4e-12
     DUF4965 105 edeqmpveesGnmlimalayaqasgda...sllekyydllkqWadYLv 149
                 ++e+mp+e+s+nml+m+la++q+sg     ++l++y +ll++W++ L+
  KOO24284.1  26 HQEPMPLENSSNMLLMLLALVQRSGAVlarQWLAPYLPLLTTWTEVLI 73 
                 689**********************987779*************9886 PP

>> SPDY  Domain of unknown function (DUF317)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.5   0.1     0.012        70      20      41 ..     142     164 ..     122     166 .. 0.80
   2 ?    8.6   0.9   0.00028       1.7      19      42 ..     218     245 ..     206     246 .. 0.81

  Alignments for each domain:
  == domain 1  score: 3.5 bits;  conditional E-value: 0.012
        SPDY  20 paaWtiearp.aadgpaWhatFt 41 
                   +W++ a   ++++p+++ +F+
  KOO24284.1 142 ASTWQLYAFNaTGQPPHYSMSFN 164
                 789******99*********996 PP

  == domain 2  score: 8.6 bits;  conditional E-value: 0.00028
        SPDY  19 e...paaWtiearp.aadgpaWhatFta 42 
                 +   +a W  +++  + d+++Wha F++
  KOO24284.1 218 HqytKADWLSWVAAmSPDEARWHALFSP 245
                 2355999*****************9985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (291 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       264  (0.0147247); expected 358.6 (0.02)
Passed bias filter:                      225  (0.0125495); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.43u 0.25s 00:00:00.68 Elapsed: 00:00:00.41
# Mc/sec: 2117.49
//
Query:       KOO24285.1  [L=380]
Description: hypothetical protein Ctob_003111, partial [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.016   15.0   1.5      0.022   14.6   0.4    1.8  2  DUF1953   Domain of unknown function (DUF1953)


Domain annotation for each model (and alignments):
>> DUF1953  Domain of unknown function (DUF1953)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.0      0.27   4.9e+03      42      51 ..       7      16 ..       2      18 .. 0.81
   2 ?   14.6   0.4   1.2e-06     0.022      13      49 ..     186     223 ..     182     225 .. 0.88

  Alignments for each domain:
  == domain 1  score: -2.6 bits;  conditional E-value: 0.27
                TTTTEEEEEE CS
     DUF1953 42 vitdetvrGr 51
                ++ det+ Gr
  KOO24285.1  7 IVWDETIVGR 16
                788****998 PP

  == domain 2  score: 14.6 bits;  conditional E-value: 1.2e-06
                 EEEETTTEEEEEESSS.S-EEEEEEEEEEETTTTEEEE CS
     DUF1953  13 GfmrGdkvlvivktln.rdydieidGeytdvitdetvr 49 
                 G+  G k   i k l+ rd +ie+d e  d i+de vr
  KOO24285.1 186 GLEAGGKANTIEKVLDvRDVEIEVDAETGDPISDEIVR 223
                 56678899999999976********************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (380 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       365  (0.0203581); expected 358.6 (0.02)
Passed bias filter:                      323  (0.0180155); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.25s 00:00:00.69 Elapsed: 00:00:00.39
# Mc/sec: 2909.03
//
Query:       KOO24286.1  [L=455]
Description: protein disulfide-isomerase 5-4-like protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      2e-34  119.4   0.3      2e-34  119.4   0.3    1.5  2  COPIIcoated_ERV  Endoplasmic reticulum vesicle transporter
    4.2e-25   87.9   0.3    4.2e-25   87.9   0.3    1.9  2  ERGIC_N          Endoplasmic Reticulum-Golgi Intermediate Com
      3e-16   59.3   0.0    6.5e-16   58.2   0.0    1.5  1  Thioredoxin      Thioredoxin
  ------ inclusion threshold ------
      0.011   15.8   0.0      0.028   14.6   0.0    1.6  1  Thioredoxin_7    Thioredoxin-like


Domain annotation for each model (and alignments):
>> COPIIcoated_ERV  Endoplasmic reticulum vesicle transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.1   0.0       2.5   1.1e+04      83     104 ..      55      76 ..      48      82 .. 0.66
   2 !  119.4   0.3   4.5e-38     2e-34      43     221 .]     263     435 ..     244     435 .. 0.85

  Alignments for each domain:
  == domain 1  score: -4.1 bits;  conditional E-value: 2.5
  COPIIcoated_ERV  83 hvhdlssyekeklnfsHtihkL 104
                       v d s  +k +lnf+ t+h+L
       KOO24286.1  55 IVLDSSDEKKLQLNFNVTLHHL 76 
                      4555555554578888888888 PP

  == domain 2  score: 119.4 bits;  conditional E-value: 4.5e-38
  COPIIcoated_ERV  43 keklkeqkk...egCrikGklevnkvaGnfhiapgksfqeekrhvhdlssyekeklnfsHtihkLsfgeelpgek...........knPLdgtk 122
                      +++++       egC + G + vn+v Gnfh++  ++ ++          ++ +kln+sHt+ +++fg+ l+ ++            n L gt+
       KOO24286.1 263 QSEVS---AgpgEGCLVRGVVLVNRVPGNFHLSAHSKSHS----------FQPHKLNMSHTVSSMTFGKALTPTQlrllprevelgYNGLAGTE 343
                      23333...2455********************97665554..........233479************9988888899**999998899***** PP

  COPIIcoated_ERV 123 keeeekalmfqYflkvvptkyekldkkkietnqysvtehersleggkdesekglPGvffsYeisPlkvivkeerksflhfltslcaiiGGvltv 216
                      +++  ++++ +++lkvv t+ye +  +++et+qy+v++++ +         ++lP  +f Y+isP++v+v+e r+s+++flts+caiiGGv+tv
       KOO24286.1 344 HHSIGHNTTLEHYLKVVHTTYEVSAARTLETYQYTVNNNHYQDG-------ESLPSAVFAYDISPMQVTVTEVRQSLAAFLTSICAIIGGVFTV 430
                      9999********************999*********76554333.......359**************************************** PP

  COPIIcoated_ERV 217 asliD 221
                      ++liD
       KOO24286.1 431 TGLID 435
                      ****9 PP

>> ERGIC_N  Endoplasmic Reticulum-Golgi Intermediate Compartment (ERGIC)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   87.9   0.3   9.4e-29   4.2e-25       1      89 [.       4      92 ..       4      94 .. 0.98
   2 ?   -2.1   0.3       1.2   5.2e+03      16      37 ..     408     430 ..     400     442 .. 0.70

  Alignments for each domain:
  == domain 1  score: 87.9 bits;  conditional E-value: 9.4e-29
                XXXXXXXXXXXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXX-EEEEEE--S--SEEEEEEEEEE.SS-GGGEEEEEEETTECE CS
     ERGIC_N  1 lrrfDafpKvpedltqktlsGgiislvcillilfLllselteylttevkeelvvdksrsekleinlditfpalpCellsldvqDesgeh 89
                l+++ +++Kvp dlt+ t+sGg isl+++l++++L+++++++ylt+++++++v+d+s+++kl++n+++t+++lpC ++sld++D++g+h
  KOO24286.1  4 LKSVHFYRKVPIDLTEATISGGAISLLSTLVMAYLFFTNFSAYLTVTQSTSIVLDSSDEKKLQLNFNVTLHHLPCRFVSLDIVDVMGTH 92
                68899**********************************************************************************98 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 1.2
                 X.XXXXXXXXXXXXXXXXXXXXX CS
     ERGIC_N  16 q.ktlsGgiislvcillilfLll 37 
                 + + +  ++++ +c+++  ++++
  KOO24286.1 408 EvRQSLAAFLTSICAIIGGVFTV 430
                 44666677777777777666555 PP

>> Thioredoxin  Thioredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.2   0.0   1.5e-19   6.5e-16       8     102 ..     146     247 ..     141     248 .. 0.87

  Alignments for each domain:
  == domain 1  score: 58.2 bits;  conditional E-value: 1.5e-19
                  HHHHHHHTTTSSEEEEEEE-TTSHHHHCHHHHHHHHHHHCTT.....TSEEEEEETTT.SHHHHHHTT-SSSSEEEEEETTE..EEEEEESS-HHHHH CS
  Thioredoxin   8 enFeeevakekklvlveFyApwCghCkalaPeleklaeelkd.....kvklakvdvde.nedlakkyevegiPtlklfkngk..evkkyegarekekl 97 
                   +F e v++ k+lv+v+FyApwC+  ++l+P++e++  ++       +v + k d++   +dl++k +v+++Pt+++++  +  + ++y+g r++++l
   KOO24286.1 146 RTFLESVKE-KRLVMVNFYAPWCPWSRRLQPVWEEAYGNVVRkeyagDVLMGKADCTGgGQDLCQKQHVHAFPTVRVYRRHNphSHESYVGDRTHQAL 242
                  679999999.************************9864443334444*********973699*****************99988999**********9 PP

                  HHHHH CS
  Thioredoxin  98 aaflk 102
                  + f++
   KOO24286.1 243 EGFVE 247
                  98876 PP

>> Thioredoxin_7  Thioredoxin-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.6   0.0   6.3e-06     0.028      15      81 ..     153     222 ..     146     223 .. 0.89

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 6.3e-06
                    HHT--EEEEE--TT-HHHHHHHHHHHH-..HHHHH.HHHT-EEEEESS--S-GGG.-TT-.--SSEEEEE CS
  Thioredoxin_7  15 ergkpvlvffgaswcftCqalerdflsd..eevkaalaekfvllrvdvterdanilelde.qgvPvvafl 81 
                    ++++ v+v+f a wc+ +++l+ + +++   +v++ +a+++ + ++d t + + + + ++ + +P+v ++
     KOO24286.1 153 KEKRLVMVNFYAPWCPWSRRLQPVWEEAygNVVRKEYAGDVLMGKADCTGGGQDLCQKQHvHAFPTVRVY 222
                    78999*****************99998888899999************9999999676667889999887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (455 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       543  (0.0302861); expected 358.6 (0.02)
Passed bias filter:                      410  (0.022868); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.48u 0.23s 00:00:00.71 Elapsed: 00:00:00.37
# Mc/sec: 3672.61
//
Query:       KOO24287.1  [L=760]
Description: associated with tfs and helicases family protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.3e-20   73.8   0.0      2e-20   73.2   0.0    1.3  1  Helicase_C  Helicase conserved C-terminal domain
      3e-06   27.1   0.5    8.4e-06   25.6   0.5    1.8  1  Chromo      Chromo (CHRromatin Organisation MOdifier) domain
    5.9e-06   25.2   0.0    9.7e-06   24.5   0.0    1.3  1  SNF2_N      SNF2 family N-terminal domain
    3.2e-05   23.2   0.0    9.8e-05   21.7   0.0    1.7  1  HDA2-3      Class II histone deacetylase complex subunits 2 a


Domain annotation for each model (and alignments):
>> Helicase_C  Helicase conserved C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   73.2   0.0   4.5e-24     2e-20       2     111 .]     218     331 ..     217     331 .. 0.93

  Alignments for each domain:
  == domain 1  score: 73.2 bits;  conditional E-value: 4.5e-24
                 HHHHHHHHH.HHTTTTSEEEEEESSHHHHHHHHHHHHHTTSTEEEESTTSTHHHHHHHHHHHH...TTSSSEEEESGGGTSSSTSTTESEEEESSSSSS CS
  Helicase_C   2 kleallell.kleeeggkilifvntidrlekvklllekkgikvavlhgelpqnereeileqfn...kgesdvLiatdvaerGidipkvnlVinfdlprn 96 
                 k++ l +ll kl+++g+++lif+++++ l+ +++l e +g+ + +l+g+    +r++++++f    ++++ +L++t++++ Gi+++ +++Vi++d+++n
  KOO24287.1 218 KMLLLDKLLpKLKADGHRVLIFSQFTKVLDLLEVLIEARGYGYERLDGNDRGVSRQQAIDRFStpqSESFLFLLSTRAGGVGINLTAADTVIIYDPDWN 316
                 6778889999*****************999899999999***********************988455566**************************** PP

                 HHHHHHHHTTSSSTT CS
  Helicase_C  97 vtsyiqriGRtgRag 111
                 +++ iq++ R++R+g
  KOO24287.1 317 PQNDIQAMARCHRIG 331
                 *************97 PP

>> Chromo  Chromo (CHRromatin Organisation MOdifier) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.6   0.5   1.9e-09   8.4e-06       1      53 [.     595     641 ..     595     642 .. 0.88

  Alignments for each domain:
  == domain 1  score: 25.6 bits;  conditional E-value: 1.9e-09
                 EEEEEEEEEEEETTEECEEEEEEETTSTGGGTEEEEGGGCSSHSHHHHHHHHH CS
      Chromo   1 yeVerIidhrtdkdgleleYlVKWkglpysentWEpeenlekcfqelideFkk 53 
                 y Ve I ++r+ +++l  +Y VKW g  y+e tWEp+++l++    ++ ++++
  KOO24287.1 595 YSVECIAAERMFRNKL--QYSVKWLG--YEEWTWEPAALLKDT--AALAAWEE 641
                 67**************..******88..5899*********88..66888776 PP

>> SNF2_N  SNF2 family N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.5   0.0   2.2e-09   9.7e-06     251     350 .]      67     161 ..      50     161 .. 0.85

  Alignments for each domain:
  == domain 1  score: 24.5 bits;  conditional E-value: 2.2e-09
                 HHHHHHHHHHHTT-STTEE---GGGT--S---EEEEEEEEE--HHHHHHHH....................HHHHHH-HHH-HHHHHHHHHHHHH---X CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
      SNF2_N 251 aqaekgrsrLlqllqrlmlrrakkdveknlPpkteeiiflklskverksYnrllevlrkkalakllkrseaalkssskskekilelllelrqacnhpql 349
                 +  e+ ++ L++ll++ +lrr k+dv + l p +e ++++++++ ++  Y  +le+ r+  +      +  a  ++        +  ++lr +cnhp+l
  KOO24287.1  67 EDGEEYVRALNKLLRPHLLRREKEDV-ETLQPMQEVLLHVEITNLQKVCYRAVLEHNRQLLVRGAGGTAGLAAAAGG----AWANVSMMLRHCCNHPWL 160
                 5788999*******************.8999********************99999999888777777666666555....4678899*********98 PP

                 X CS
                 x RF
      SNF2_N 350 v 350
                 +
  KOO24287.1 161 I 161
                 5 PP

>> HDA2-3  Class II histone deacetylase complex subunits 2 and 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.7   0.0   2.2e-08   9.8e-05      81     249 ..     207     357 ..     199     375 .. 0.79

  Alignments for each domain:
  == domain 1  score: 21.7 bits;  conditional E-value: 2.2e-08
                 THHHHHHHT-HHHHHHHHHHHHHTTSS....EEEEEEE-STHHHHHHHHHHTTSSSEEEESSS--S--S---S-..................-SEEEEE CS
      HDA2-3  81 elpeklaetSgKFkvlndlvnliierkrksslnvlvvakskkeldLiEalllGkklkikrysgeklydekkkkskdtkknsrktkeklkkkihsltihl 179
                    e+l+++SgK+ +l +l+  +  +       vl+ ++  k ldL+E l+  ++  ++r++g+      ++              +  ++ +s  +++
  KOO24287.1 207 RYVERLVNSSGKMLLLDKLLPKLKADG----HRVLIFSQFTKVLDLLEVLIEARGYGYERLDGNDRGVSRQQAI------------DRFSTPQSESFLF 289
                 56799*******************999....99*****************************986433333332............2234556778888 PP

                 EESS---TTTS--TT-S-EEEEEE-SST--TTSHHHHHHH----.------EEEEEETTSHHHHHHHHTS- CS
      HDA2-3 180 lsttrqltkdksllenikfdliiafDssvdtsspsveslrtqnr.kknklpiirlvpinSieHvkLcfkkd 249
                 l +tr         + + +d +i  D++ +++++   + r ++  + + + +++l++ ++ e  +L   ++
  KOO24287.1 290 LLSTRAGG---VGINLTAADTVIIYDPDWNPQNDIQAMARCHRIgQTRAVNVYKLITRDTYEMHMLAAANH 357
                 88888774...44677788*************9988888877641344599**********9999988733 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (760 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1092  (0.0609069); expected 358.6 (0.02)
Passed bias filter:                      546  (0.0304535); expected 358.6 (0.02)
Passed Vit filter:                        72  (0.00401584); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.70u 0.23s 00:00:00.93 Elapsed: 00:00:00.39
# Mc/sec: 5903.15
//
Query:       KOO24288.1  [L=87]
Description: hypothetical protein Ctob_003112 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (87 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       401  (0.022366); expected 358.6 (0.02)
Passed bias filter:                      148  (0.00825478); expected 358.6 (0.02)
Passed Vit filter:                         6  (0.000334653); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.21s 00:00:00.54 Elapsed: 00:00:00.35
# Mc/sec: 740.53
//
Query:       KOO24289.1  [L=529]
Description: hypothetical protein Ctob_003119 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (529 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       590  (0.0329076); expected 358.6 (0.02)
Passed bias filter:                      364  (0.0203023); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.52u 0.26s 00:00:00.78 Elapsed: 00:00:00.42
# Mc/sec: 3739.09
//
Query:       KOO24290.1  [L=232]
Description: hypothetical protein Ctob_003118 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (232 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       684  (0.0381505); expected 358.6 (0.02)
Passed bias filter:                      507  (0.0282782); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.43u 0.27s 00:00:00.70 Elapsed: 00:00:00.42
# Mc/sec: 1650.51
//
Query:       KOO24291.1  [L=1990]
Description: structural maintenance of chromosomes flexible hinge domain-containing protein 1 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    2.3e-10   40.4   0.0    5.9e-10   39.1   0.0    1.6  1  HATPase_c_3  Histidine kinase-, DNA gyrase B-, and HSP90-like


Domain annotation for each model (and alignments):
>> HATPase_c_3  Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.1   0.0   3.3e-14   5.9e-10       8     101 ..     138     278 ..     132     307 .. 0.75

  Alignments for each domain:
  == domain 1  score: 39.1 bits;  conditional E-value: 3.3e-14
  HATPase_c_3   8 aelvdNsldAdaen............vkievn..............knrgkt....geivieDdGkGmseeelknalrlatsskeakr.....ksts. 69 
                  +e++dNs++A  +             ++i++               k    +    + ivi D G Gm+ ++l+++ ++a+++ ++++     +    
   KOO24291.1 138 CEFIDNSIEAMRRMwdatpharhsatIEIHLVysqvgltggydaatK----QhwplKHIVILDHGPGMTHKQLRQWAEMANPTDSRREaiankG--Ge 229
                  79********99999999******88666666556666666644432....15667***************************99875444440..04 PP

  HATPase_c_3  70 ...........lGkkGiGlklAslslgkkltvitkkegess......tl 101
                             lGk+G+G k A++  g ++  +t++++++       ++
   KOO24291.1 230 wtsdpchadgqLGKFGVGSKQAGFFYGTSVRAVTRNREDQAgpnsnwVT 278
                  44455555556***********************988777644333344 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1990 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       568  (0.0316805); expected 358.6 (0.02)
Passed bias filter:                      455  (0.0253779); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 1.01u 0.29s 00:00:01.30 Elapsed: 00:00:00.47
# Mc/sec: 12802.09
//
Query:       KOO24292.1  [L=558]
Description: hypoxia-inducible factor 1-alpha inhibitor [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.1e-37  130.1   0.0    1.9e-37  129.3   0.0    1.3  1  Cupin_8   Cupin-like domain
    7.1e-07   29.0   0.0    1.4e-06   28.0   0.0    1.5  1  Cupin_4   Cupin superfamily protein


Domain annotation for each model (and alignments):
>> Cupin_8  Cupin-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  129.3   0.0   2.2e-41   1.9e-37       6     249 ..     179     453 ..     175     457 .. 0.77

  Alignments for each domain:
  == domain 1  score: 129.3 bits;  conditional E-value: 2.2e-41
     Cupin_8   6 reyvakskPviikgalkdwpalqkwtddeylleylkekaedvkvsvektpdgeadsfkeneelkfvkpe.........eeemtfkdfldelearrdtrs 95 
                 r +++++kPvi++  +  + a +kwt     l+yl +++     +v  +    + +f++ ++ k++            +  m +++f ++l    +t s
  KOO24292.1 179 RALLEQRKPVILTHHTLVGGAASKWT-----LDYLCQQMHGLPCTVYSSS---SRHFRYWDDEKNQAGYpfaaddhtaKLSMDIDEFRRRLAGLASTGS 269
                 77899**********99999*****9.....6*************96665...4455333322222211223555555888888999666665555555 PP

     Cupin_8  96 ep............................yaylqnanlasefpelked.sdlpfateafgkkpe......avnlWlGnsasvsslHkDhyeNlycvvr 159
                  +                            ++ylq a ++   +e+++d   +++   + ++++       +  l +G+++ ++  H+D  +Nl+++++
  KOO24292.1 270 AApaegvdskdsaagdggdaaggdassgsqRLYLQTALVDGVGAEMMADfRAFDWEGVLATQQRLgwgslsSNLLLVGQKGNTTPCHYDEQQNLFAQLH 368
                 44566666666777777777778888888888888877777777777776555554444433333444442545788********************** PP

     Cupin_8 160 GrKkftLfpPsdapflyeaslsptedgtvvssvdveepdlekfprlkdakkalevtlnaGevLylPalWfHeVkslaeeplhlavnywyd 249
                 G K+++Lf+P+d  +ly+++   ++     s+vd+ +pdl++fpr++ a ++le+ l++GevLylP+ W+H++++l  ++ ++++n+w++
  KOO24292.1 369 GAKRVILFSPADFGCLYPFPM--HHPCDRQSQVDLYAPDLSRFPRFRAA-RPLEAILQPGEVLYLPQYWWHHIENL--DEACVSLNFWFK 453
                 *******************95..4455689*******************.**************************..778********8 PP

>> Cupin_4  Cupin superfamily protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.0   0.0   1.6e-10   1.4e-06     118     205 ..     343     448 ..     335     523 .. 0.86

  Alignments for each domain:
  == domain 1  score: 28.0 bits;  conditional E-value: 1.6e-10
                 EEEE-TTBBSS-SEE-SSEEEEEEEEC-EEEEEE-..............SCCCTTSSS.EE--TTCCG--..S-SEEEEE-TT-EEEE-TT-EEEEEBB CS
     Cupin_4 118 vYatpggsqgvgpHyDdyDVfllQleGrkrWrvyk..............ptvpelelk.seeplkildef..epvedfvLepGDlLYlPrgviHqgvae 199
                 + +  ++ ++ + HyD+   +  Ql+G kr  + +              p++++++ +   ++l+++ +f  +   + +L+pG +LYlP  ++H+ + +
  KOO24292.1 343 LLLVGQKGNTTPCHYDEQQNLFAQLHGAKRVILFSpadfgclypfpmhhPCDRQSQVDlYAPDLSRFPRFraARPLEAILQPGEVLYLPQYWWHHIENL 441
                 5555555578999*********************9**********9888887776654156778888888655567*******************9999 PP

                 T.-CCEE CS
     Cupin_4 200 d.esltl 205
                 d  +++l
  KOO24292.1 442 DeACVSL 448
                 9777766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (558 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       462  (0.0257683); expected 358.6 (0.02)
Passed bias filter:                      327  (0.0182386); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.57u 0.24s 00:00:00.81 Elapsed: 00:00:00.43
# Mc/sec: 3910.82
//
Query:       KOO24293.1  [L=114]
Description: hypothetical protein Ctob_012905 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (114 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       639  (0.0356406); expected 358.6 (0.02)
Passed bias filter:                      344  (0.0191868); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.24s 00:00:00.61 Elapsed: 00:00:00.39
# Mc/sec: 868.02
//
Query:       KOO24294.1  [L=559]
Description: tRNA -lysidine synthetase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.7e-40  137.3   0.1    3.8e-39  134.3   0.1    2.0  1  ATP_bind_3  PP-loop family
     0.0027   17.1   0.8     0.0066   15.8   0.2    2.0  2  TilS_C      TilS substrate C-terminal domain


Domain annotation for each model (and alignments):
>> ATP_bind_3  PP-loop family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  134.3   0.1   4.3e-43   3.8e-39       2     180 ..      10     198 ..       9     200 .. 0.88

  Alignments for each domain:
  == domain 1  score: 134.3 bits;  conditional E-value: 4.3e-43
                 EEEE--SCHHHHHHHHHHHHHCTTTTTEEEEEEEE-SSSTCHHHHHHHHHHHHHHTT-EEEEEE--H.HHCTTSTCCCHHHHHHHH....HHHHC..H. CS
  ATP_bind_3   2 vlvAvSgGlDSmaLllllaklkkklgiklvaihvdhglreeskeeaelvkelckklnikleiekvdv.akkkgknleeaARelRYe....vlkea..l. 92 
                 vl+ vSgG+DS+aLl +l++l+++l+++l+a+h++hg+r es+ee+ +v++l++++++++++ ++   ++   ++++e+ R +R      +l+++  + 
  KOO24294.1  10 VLISVSGGSDSVALLRVLVELNSQLQWDLAAVHFNHGFRRESEEEEVFVRSLAAEHGVPMHVRRLAEaDRALANGVQERTRAWRRTeslaILSSLdaAp 108
                 799**************************************************************99778889**********9752222333321111 PP

                 ......HCCT.CEEE---BHHHHHHHHHHHHCCT--CCHHH-S-SEEEETTCCEE-CCCT--HHHHHHHHHHTT---B--CGGGCTTSHHHHHH CS
  ATP_bind_3  93 ......kkegievlllAhhadDqaEtfllrlargsglaglagikeaseiasirlvRPlLkvskeeleeylkekkikwveDesNadekyeRnriR 180
                       +++    ++l+hhadDq+Et++l+  rg  l++l g++++     + +vRPlL  +k+el +yl+  +++w+eD+sNa  ky+Rnr+R
  KOO24294.1 109 ehgsggREQPRGAVMLGHHADDQLETIVLKGLRGCHLSNLHGMRWQD----GPFVRPLLGQRKSELVAYLRALGQEWREDASNAVPKYKRNRVR 198
                 1111113444579********************************88....******************************************9 PP

>> TilS_C  TilS substrate C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.0      0.72   6.5e+03      36      44 ..     259     267 ..     257     279 .. 0.84
   2 !   15.8   0.2   7.4e-07    0.0066       1      52 [.     461     514 ..     461     532 .. 0.87

  Alignments for each domain:
  == domain 1  score: -3.3 bits;  conditional E-value: 0.72
                 HCCCSEEEE CS
      TilS_C  36 lRdriPLlf 44 
                 lR+++P++ 
  KOO24294.1 259 LRQQVPMVQ 267
                 899999985 PP

  == domain 2  score: 15.8 bits;  conditional E-value: 7.4e-07
                 EEEEC-.TTSEEEBTTSSSEEEHHHHHHHCT--HHHCCCSEEEEE..TTEEEEE CS
      TilS_C   1 lsvrfrrggerlqpagrggsrkLKklfqeagvPpwlRdriPLlfy..gdelvav 52 
                 l++r+ r+g+r++p  r     L +++  ++v+ ++R+ +PL++     e++av
  KOO24294.1 461 LELRTPRPGDRFHPLWREAPIGLTNFLRGQRVALERRRATPLVCQagSQEVLAV 514
                 6899****************************************9533355555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (559 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       309  (0.0172346); expected 358.6 (0.02)
Passed bias filter:                      217  (0.0121033); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.51u 0.23s 00:00:00.74 Elapsed: 00:00:00.41
# Mc/sec: 4139.30
//
Query:       KOO24295.1  [L=650]
Description: voltage-gated ion channel superfamily [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.4e-06   27.7   1.7    1.4e-06   27.7   1.7    2.0  2  Ion_trans  Ion transport protein
  ------ inclusion threshold ------
      0.089   12.7   0.0       0.29   11.0   0.0    1.8  2  ERF        ERF superfamily


Domain annotation for each model (and alignments):
>> Ion_trans  Ion transport protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.7   1.7   1.6e-10   1.4e-06       5     125 ..      83     216 ..      79     225 .. 0.73
   2 ?    1.0   0.2     0.023   2.1e+02     217     239 ..     322     344 ..     304     347 .. 0.83

  Alignments for each domain:
  == domain 1  score: 27.7 bits;  conditional E-value: 1.6e-10
                 HHHHHHHHHHHHHHHHCCCSSSSHHHHC.HHHHHHHHHHHHHHHHHHHHHHHHHTH..............HHHHHHCHSHHHHHHHHHHHHHHHHH... CS
   Ion_trans   5 elfilllillncvflaletyfpedelek.tileilelvftaiftlemllkilalgl..............likkrYlrdpwnilDflvvlpsllsl... 85 
                 +l+ ll +  ++++ ++e      +    t l+++++v+++if+l ++ +++  +                i+krY+    +++D+++++p+   +   
  KOO24295.1  83 DLLTLLALGFTVLVTPYEVGLIL-N--PiTSLDYANYVVNVIFFLGIITQFFLPYHekaqeggrlvrshsRIAKRYVLGS-FFVDVVSTIPFSDLApll 177
                 55566666666666666444443.3..2589*********************966689999999***************7.9********997655664 PP

                 .HHHH.HHHHHHHHHHHHGGGGGGHHHCHSHHHHHHHHHHHH CS
   Ion_trans  86 .vlse.esllllsvlrlfrvlrllklisrleglrtlvtalir 125
                       +s   l++lr++r +rllkl + ++  r+lv  l++
  KOO24295.1 178 mS--GeQSSKELQLLRMLRAVRLLKLGRIFRASRILVS-LAD 216
                 31..2456677777777777777777777777666554.444 PP

  == domain 2  score: 1.0 bits;  conditional E-value: 0.023
                 HHHHHHHHHHHHHHHHHHHHHHH CS
   Ion_trans 217 fiilgsflllNlliaviadnfqe 239
                 ++ ++++++ N++++v+a++ +e
  KOO24295.1 322 VCQFIMLIVSNIFVGVVANAQAE 344
                 5667889999*******998776 PP

>> ERF  ERF superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.0      0.33     3e+03     101     115 ..     147     161 ..     135     162 .. 0.80
   2 ?   11.0   0.0   3.3e-05      0.29      22      85 ..     577     638 ..     565     648 .. 0.76

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 0.33
         ERF 101 saitYakrYaLlalf 115
                 s + +akrY+L  +f
  KOO24295.1 147 SHSRIAKRYVLGSFF 161
                 55668******9998 PP

  == domain 2  score: 11.0 bits;  conditional E-value: 3.3e-05
         ERF  22 qftkykYasledileaikpvlkehglilkpeikstegeteltvevtttlvdneggeiesvkava 85 
                 ++ k++Y++++++++ i+ +l   g+ +++++      +   + v++ +v+ ++g +    a++
  KOO24295.1 577 PNSKFEYREYHEVMKRINGALPLRGFAVEQRF--SADVQVASLAVAALNVAGDDGRLLLDEAGQ 638
                 5669****************************..444455566677777777777766666555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (650 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       577  (0.0321825); expected 358.6 (0.02)
Passed bias filter:                      497  (0.0277205); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.59u 0.28s 00:00:00.87 Elapsed: 00:00:00.41
# Mc/sec: 4792.46
//
Query:       KOO24296.1  [L=144]
Description: hypothetical protein Ctob_010600 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (144 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       448  (0.0249875); expected 358.6 (0.02)
Passed bias filter:                      283  (0.0157845); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.26s 00:00:00.59 Elapsed: 00:00:00.38
# Mc/sec: 1150.12
//
Query:       KOO24297.1  [L=238]
Description: ubiquitin-conjugating enzyme e2 t-like protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.7e-41  140.5   0.0    3.8e-41  140.0   0.0    1.2  1  UQ_con     Ubiquitin-conjugating enzyme
  ------ inclusion threshold ------
      0.013   15.2   0.0      0.021   14.5   0.0    1.3  1  Prok-E2_B  Prokaryotic E2 family B
      0.088   13.1   0.0       0.13   12.6   0.0    1.3  1  RWD        RWD domain


Domain annotation for each model (and alignments):
>> UQ_con  Ubiquitin-conjugating enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  140.0   0.0   6.3e-45   3.8e-41       1     138 [.      10     149 ..      10     151 .. 0.96

  Alignments for each domain:
  == domain 1  score: 140.0 bits;  conditional E-value: 6.3e-45
                 HHHHHHHHHHHSTTTTEEEEEEETTEECEEEEEEEB.TTSTTTTEEEEEEEE--TTTTTS--EEEESST-SCTTBETTSBB-CGGGS...TTT--TTSH CS
      UQ_con   1 rlqkelkelakkkpsgisaklvddenlfewkvlikgpedtpYeggvFklelefpedYPlkpPkvkfvtkifHPnvdksGevcldiLk...eekWspalt 96 
                 r+qkelk l +++p+gisa   dd ++++++++++g+e+tpY++g F+l++ +p +YP++pPkv+fvt+i+HPn+d+ G++cld L+   +  W+p+l+
  KOO24297.1  10 RVQKELKLLFEDPPPGISAWACDD-SMNKLEAVVHGAEGTPYANGRFHLQICIPARYPFEPPKVQFVTPIYHPNIDSAGRICLDTLNlppKGAWKPSLS 107
                 79*********************7.**************************************************************777666****** PP

                 HHHHHHHHHHHHHS--TTS-SSHHHHHHHHHTHHHHHHHHHH CS
      UQ_con  97 lesvllsiqsLlaepnpesplnkeaakllkkdreeykkkvke 138
                 +++vl s+q L++epnp+++l +++ +++ +d+++y++++ e
  KOO24297.1 108 ISTVLSSLQLLMSEPNPDDGLMVDITAQFVNDHARYERTAVE 149
                 *************************************99866 PP

>> Prok-E2_B  Prokaryotic E2 family B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.5   0.0   3.5e-06     0.021      34     126 ..      51     145 ..      21     152 .. 0.80

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 3.5e-06
   Prok-E2_B  34 sggtvdlrlvypdsfpllppavflqdpeqlkllpHintfggaLCllee.eldld.ewdpngsvadvleqlqqvLnegisgde.....daefagEfqsYw 125
                   g + l++ +p  +p+ pp+v  + p      p i + +g +Cl ++  l++  +w+p  s+  vl++lq ++ e   +d+      a+f++  + Y+
  KOO24297.1  51 ANGRFHLQICIPARYPFEPPKVQFVTPI---YHPNIDS-AGRICL-DTlNLPPKgAWKPSLSISTVLSSLQLLMSEPNPDDGlmvdiTAQFVNDHARYE 144
                 568899*********************9...4566666.7*****.5667766549*****************99555555557777777777777777 PP

   Prok-E2_B 126 e 126
                  
  KOO24297.1 145 R 145
                 6 PP

>> RWD  RWD domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   2.1e-05      0.13      54      78 ..      54      78 ..      32     130 .. 0.82

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 2.1e-05
                EEEEEEEE-SSTTSS--EEEEEECC CS
                xxxxxxxxxxxxxxxxxxxxxxxxx RF
         RWD 54 slkleiklpeeYPeeaPiislsste 78
                +++l+i  p  YP e+P++++ ++ 
  KOO24297.1 54 RFHLQICIPARYPFEPPKVQFVTPI 78
                79*****************998876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (238 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       643  (0.0358637); expected 358.6 (0.02)
Passed bias filter:                      254  (0.014167); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.40u 0.28s 00:00:00.68 Elapsed: 00:00:00.42
# Mc/sec: 1716.95
//
Query:       KOO24298.1  [L=165]
Description: magnesium-dependent phosphatase 1 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.2e-31  109.8   0.0    1.3e-31  109.7   0.0    1.0  1  Acid_PPase  Acid Phosphatase
  ------ inclusion threshold ------
        0.2   11.1   0.0       0.26   10.8   0.0    1.1  1  DUF2608     Protein of unknown function (DUF2608)


Domain annotation for each model (and alignments):
>> Acid_PPase  Acid Phosphatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  109.7   0.0   1.5e-35   1.3e-31      23     166 ..       7     150 ..       1     153 [. 0.95

  Alignments for each domain:
  == domain 1  score: 109.7 bits;  conditional E-value: 1.5e-35
                 S-S-EEE-TTS.-EEETT--EE---TTHHHHHHHHHH....TT--EEEEE--S-HHHHHHHHHHTT-G..........GGESEEEESSS-HHHHHHHHH CS
  Acid_PPase  23 vsaplkkeskksevvDrrgeelklypdveeileelks....kevklavaSrtdepdlarelLklleindakekekklldvfddveiykgsktkhfeklk 117
                  +ap++k + ++ ++D rg +++++ +v+e+l+elk+     ++ + vaS tdep++a+e+++ ++i     ++  ++dv++  ei kg+k+ h+++++
  KOO24298.1   7 GGAPFSKAAAGTDLTDVRGAKVRMIGAVPEVLRELKTdpawINTVVGVASCTDEPEWAQECMRKFDIG----SGYCIKDVMQIEEIHKGNKQGHLRNIA 101
                 679**********************************9999999************************....99999999999**************** PP

                 HHH---GGGEEEEES-HHHHHHHHTTT-EEEE-SSS--HHHHHHHHHHH CS
  Acid_PPase 118 kktgieyedmlfFDdesrnievesrlgvtfvlvpdGltreefekglkew 166
                 ++tg+++e++lfFD+e++n+ ++++lg+t++ vp+G+t  ++ + l+ +
  KOO24298.1 102 EQTGLAFEEVLFFDNERDNCLDVAQLGCTVAWVPEGVTAVAWAETLERF 150
                 **********************************************988 PP

>> DUF2608  Protein of unknown function (DUF2608)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   2.9e-05      0.26     157     198 ..      82     126 ..      65     129 .. 0.88

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 2.9e-05
     DUF2608 157 vlftsglnKGe...aLlklLdkigrepksviFiDDkkknlasvee 198
                 v+  ++++KG+    L ++ +++g  +++v+F D++++n  +v++
  KOO24298.1  82 VMQIEEIHKGNkqgHLRNIAEQTGLAFEEVLFFDNERDNCLDVAQ 126
                 677889999974446999999********************9987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (165 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       441  (0.024597); expected 358.6 (0.02)
Passed bias filter:                      426  (0.0237604); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.39u 0.26s 00:00:00.65 Elapsed: 00:00:00.41
# Mc/sec: 1213.52
//
Query:       KOO24299.1  [L=621]
Description: large subunit gtpase 1-like protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    3.1e-13   49.8   0.0    8.4e-13   48.4   0.0    1.8  1  MMR_HSR1     50S ribosome-binding GTPase
    1.5e-06   28.3   0.0      0.079   12.9   0.1    2.4  2  RsgA_GTPase  RsgA GTPase
    0.00017   21.2   0.0    0.00047   19.7   0.0    1.7  2  FeoB_N       Ferrous iron transport protein B


Domain annotation for each model (and alignments):
>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.4   0.0   1.4e-16   8.4e-13       2      58 ..     318     376 ..     317     420 .. 0.85

  Alignments for each domain:
  == domain 1  score: 48.4 bits;  conditional E-value: 1.4e-16
                 EEEEESTTSSHHHHHHHHHTS.TEEESSSTTSSSSEEEEEEEETTEEEEEEECGGCS..S CS
    MMR_HSR1   2 vaivGrpNvGKStLinaltge.kaivsdkpgtTrdinegrvklkgkeielvDtpGli..e 58 
                 v++vG+pNvGKS+ in l+ + k  vs++pg+T++ ++  v  + + i l+D+pGl+   
  KOO24299.1 318 VGFVGYPNVGKSSTINVLVAAkKTNVSATPGKTKHFQTLLVP-DTPGILLCDCPGLVfpT 376
                 99*****************98689***************996.6699********85331 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.7   0.0   1.4e-05     0.085      49     106 ..     208     262 ..     194     264 .. 0.85
   2 !   12.9   0.1   1.3e-05     0.079     101     161 ..     317     372 ..     307     377 .. 0.77

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 1.4e-05
                  EEEEEE-GGG--HHHHHHHHHHHHHHTTSEEEE--TTTHTTHHHHHHHCTTSEEEEEC CS
  RsgA_GTPase  49 pvivlnKiDlleeeeeleelkeelealgyevllvsaktkegleelkellkdktsvlvG 106
                   ++++nK+Dll+e++  +++++ +++ g++++++sa   ++ ++l e+ + + ++l+G
   KOO24299.1 208 CLLLINKADLLTERQ-RRAWASYFREKGIDFVFWSAA--AAQQSLDEAARRERAALLG 262
                  5799***********.******************999..6666777777776666666 PP

  == domain 2  score: 12.9 bits;  conditional E-value: 1.3e-05
                  EEEEECSTTSSHHHHHHHHCTT-----S--------------SEEEEEETTTEEEESS-SS CS
  RsgA_GTPase 101 tsvlvGqSGvGKStLinallpelelktgevseklgrGkhTTtavellelaegglliDtPGf 161
                  t+ +vG   vGKS+ in+l+  ++    +vs++ g+ kh    + l++   g ll+D PG+
   KOO24299.1 317 TVGFVGYPNVGKSSTINVLVAAKK---TNVSATPGKTKHFQ--TLLVPDTPGILLCDCPGL 372
                  667999999***********9844...56677777777753..455665569999999997 PP

>> FeoB_N  Ferrous iron transport protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.0      0.51     3e+03      76     122 ..     172     222 ..     152     246 .. 0.66
   2 !   19.7   0.0   7.9e-08   0.00047       2      70 ..     317     386 ..     316     398 .. 0.80

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 0.51
                 CTSSSEEEEEEEGGG..HHHHHHHHHHHHHTT..SSEEEEEETHHHHHHTT CS
      FeoB_N  76 eeepdvvvnvvdatn..lernLyLtlqllelg..vpvvlalnmideaekkg 122
                  e+ +++ ++vd  n  l r   L   + +++  ++++l +n+ d +++++
  KOO24299.1 172 LERSQLLCQIVDGRNplLFRCAELEHYVHDIDpsKRCLLLINKADLLTERQ 222
                 456677777777776445566666555555443377888888888877665 PP

  == domain 2  score: 19.7 bits;  conditional E-value: 7.9e-08
                 EEEEEESTTSSHHHHHHHHHTTS.EEEEESTTSSSEEEEEEEEETTEEEEEEE----.SSSSSSSHHHHHH CS
      FeoB_N   2 tvalvGnpnvGkttlfnaltgak.qkvgNwpGvtvekkegklklkgkeveivDlPGi.Yslsayseeekva 70 
                 tv +vG pnvGk++ +n l  ak ++v+  pG+t   ++  +  ++  + ++D PG  +  +a s+ + v 
  KOO24299.1 317 TVGFVGYPNVGKSSTINVLVAAKkTNVSATPGKTKHFQTLLVP-DTPGILLCDCPGLvFPTTAGSKAQMVC 386
                 6889**************98775379********999888888.889999*****9636666666655555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (621 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       654  (0.0364772); expected 358.6 (0.02)
Passed bias filter:                      438  (0.0244297); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.60u 0.25s 00:00:00.85 Elapsed: 00:00:00.41
# Mc/sec: 4531.08
//
Query:       KOO24300.1  [L=215]
Description: hypothetical protein Ctob_010598 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (215 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       527  (0.0293937); expected 358.6 (0.02)
Passed bias filter:                      313  (0.0174578); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.40u 0.21s 00:00:00.61 Elapsed: 00:00:00.37
# Mc/sec: 1719.00
//
Query:       KOO24301.1  [L=1066]
Description: chromosome-associated kinesin kif4a [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.3e-79  266.7   0.0    4.1e-68  229.7   0.0    2.4  2  Kinesin       Kinesin motor domain
      2e-18   66.8   0.0      5e-18   65.5   0.0    1.7  1  Microtub_bd   Microtubule binding
  ------ inclusion threshold ------
      0.072   12.9   1.3        7.8    6.2   0.1    2.6  2  DEAD          DEAD/DEAH box helicase
          1    9.6   3.9        1.8    8.8   2.6    2.1  2  Pepsin-I3     Pepsin inhibitor-3-like repeated domain


Domain annotation for each model (and alignments):
>> Kinesin  Kinesin motor domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  229.7   0.0   9.2e-72   4.1e-68      37     262 ..      43     266 ..      29     267 .. 0.93
   2 !   35.8   0.0   9.1e-13   4.1e-09     295     333 .]     266     304 ..     266     304 .. 0.97

  Alignments for each domain:
  == domain 1  score: 229.7 bits;  conditional E-value: 9.2e-72
                 TTSCEEEEESEEEETTS-HHHHHHHHHHHHHHHHHTTSEEEEEEEESTTSSHHHHHTBC...TTTSBSHHHHHHHHHHHHHHHCTTTH.EEEEEEEEEE CS
     Kinesin  37 eeeekkfkFdkvfdeeatqeevyeetakplvesvleGynatifaYGqtgsGKTyTmegk...eeeeeGiipraleelFesikkekeek.ekefsvkvsy 131
                 e+ e++++Fd+v+d +a+q+++y ++ +p+++++leG+n+tifaYGqtgsGKT+Tm+g         Gi+p+  +elF  ++++ e++ +++f ++vsy
  KOO24301.1  43 EKGEQRYHFDSVYDGSASQTQIYADLGAPILRKALEGFNGTIFAYGQTGSGKTFTMSGGesvGGGALGIVPQLGDELFFLVDQMLEQTpDTKFLLTVSY 141
                 67899*****************************************************977766789***********99988766543789******* PP

                 EEEETTEEEETTSTTTTSTSSEBEEEECTTSCCEEETTS--EEESSHHHHHHHHHHHHHHHTSTTSSCTSHHCCSEEEEEEEEEEEETTTTTCEEEEEE CS
     Kinesin 132 lEiYneeiyDLLeskkskkkkklkiredskkgevyvkgltevevksaeevlellekgeknrkvaetklneeSSRSHavftitleqknlkeeteekvkis 230
                 lEiYne ++DLL ++    ++ l+i+e+++ g v+vkgltev v+   ++++l + g ++r ++et++n++SSRSHa++t++++q++l+++ e    ++
  KOO24301.1 142 LEIYNEMCVDLLVPTA-AASRALEIKEHPQLG-VHVKGLTEVPVRARADLMKLAADGGARRVTGETQMNARSSRSHAIMTLHIRQQRLARKLE---VSA 235
                 ***************6.55557********98.******************************************************997777...799 PP

                 EEEEEEEEECCCHHHHSSTCHHHHHHHHHHHH CS
     Kinesin 231 klnLvDLAGsErasktgaaegerlkEaaniNk 262
                 k+nLvDLAGsEra+ktg aeg+rlkE+ +iN+
  KOO24301.1 236 KINLVDLAGSERAAKTG-AEGQRLKEGIQINQ 266
                 *****************.58***********8 PP

  == domain 2  score: 35.8 bits;  conditional E-value: 9.1e-13
                 GGGHSSSSEEEEEEEE-TBGGGHHHHHHHHHHHHHHCTT CS
     Kinesin 295 qdsLgGnsktlmivtvspssenleetlstlkfaerakei 333
                 q+sLgGns t+mi+++sp++ +lee+++tl++a+rak i
  KOO24301.1 266 QESLGGNSLTVMIACISPAEAHLEESMTTLQYADRAKAI 304
                 79**********************************987 PP

>> Microtub_bd  Microtubule binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.5   0.0   1.1e-21     5e-18      27     149 .]      17     153 ..      11     153 .. 0.79

  Alignments for each domain:
  == domain 1  score: 65.5 bits;  conditional E-value: 1.1e-21
                  EEECCCS-T..EEEETTT.........TTTEEEE-SEEEECTTHCCCCCCCCH.HHHHHHHTT--EEEEEEES....................ST-HC CS
  Microtub_bd  27 rvrpelesek.akikfpe......eekkkkkefsFdrvfeseseqeevfeeis.qlvqsaldgynvcifaygqTGsGKtyTmeg....eeeeagmipr 112
                  r rp  + e  ++++f+         +k +++++Fd v++ +++q +++ ++   ++  al+g n +ifaygqTGsGKt+Tm+g         g +p+
   KOO24301.1  17 RARPLGKAEGeVAMTFTPtsivisPGEKGEQRYHFDSVYDGSASQTQIYADLGaPILRKALEGFNGTIFAYGQTGSGKTFTMSGgesvGGGALGIVPQ 114
                  5555555543355555523455554568899********************96268999*************************766556678999** PP

                  HHHHHHHHHHCCTS..CCCCEEEEEEEEEEESS-EEETT CS
  Microtub_bd 113 aveeifetiselke..kgwkyeielqfveiynekvqDlL 149
                  + +e+f  + +  e     k+ ++++++eiyne   DlL
   KOO24301.1 115 LGDELFFLVDQMLEqtPDTKFLLTVSYLEIYNEMCVDLL 153
                  *99999887775431278999****************98 PP

>> DEAD  DEAD/DEAH box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.8   0.2    0.0048        21      14      31 ..      81      98 ..      68     100 .. 0.77
   2 ?    6.2   0.1    0.0018       7.8      58     136 ..     356     435 ..     341     466 .. 0.67

  Alignments for each domain:
  == domain 1  score: 4.8 bits;  conditional E-value: 0.0048
                TCEEEEEESTTSSHHHHH CS
                xxxxxxxxxxxxxxxxxx RF
        DEAD 14 ggdvlvaaeTGsGKTlaf 31
                +g +++ ++TGsGKT  +
  KOO24301.1 81 NGTIFAYGQTGSGKTFTM 98
                3789999********875 PP

  == domain 2  score: 6.2 bits;  conditional E-value: 0.0018
                 HHHHHHHHHHHHHTTTSTSEEEEEET.TSSHHHHHHHH....HTTCSEEEEEHHHHHHHHHCTSSHCTTEEEEEEETHHHHHHT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxx....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD  58 eLaeqtlnnlkkfkkyidlrvlliig.gvaardqlskl....dngvdivvgtpgrlddllstgklnlsqvrflVlDEadrlldq 136
                 eL eq l+n    +++ +  + +++g + a r+q+++     ++++   v t+gr+++ll++ ++   q r + +DE ++l ++
  KOO24301.1 356 ELYEQKLQNS---FEEREAACAALLGrERALREQVAAHhaqrRAQLSTNVHTHGRWMELLWRANVAW-QQRAVTVDELQNLESE 435
                 5555555443...332223333444422333444444422212469999***********8777555.5578888***999988 PP

>> Pepsin-I3  Pepsin inhibitor-3-like repeated domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.0      0.87   3.9e+03      34      65 ..     304     335 ..     301     341 .. 0.83
   2 ?    8.8   2.6    0.0004       1.8      40      69 ..     341     370 ..     329     373 .. 0.86

  Alignments for each domain:
  == domain 1  score: -1.9 bits;  conditional E-value: 0.87
   Pepsin-I3  34 iylRdLtseEqsELktydaevtkYkeelkssl 65 
                 i lR    e +sE     +ev++ +++l++ l
  KOO24301.1 304 IQLRAVKNEHVSEVGRLRQEVNELRRKLSARL 335
                 67899999999999999999999999999887 PP

  == domain 2  score: 8.8 bits;  conditional E-value: 0.0004
   Pepsin-I3  40 tseEqsELktydaevtkYkeelksslqerv 69 
                 + ++ +EL+ y  + + Y ++l++s +er 
  KOO24301.1 341 SEDDREELAAYRSQIELYEQKLQNSFEERE 370
                 5677889********************995 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1066 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1513  (0.0843884); expected 358.6 (0.02)
Passed bias filter:                      589  (0.0328518); expected 358.6 (0.02)
Passed Vit filter:                        65  (0.00362541); expected 17.9 (0.001)
Passed Fwd filter:                        14  (0.000780858); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.91u 0.27s 00:00:01.18 Elapsed: 00:00:00.45
# Mc/sec: 7119.38
//
Query:       KOO24302.1  [L=173]
Description: hypothetical protein Ctob_001511 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
      0.006   16.5   0.0      0.006   16.5   0.0    2.3  2  AAA_lid_9      AAA lid domain
  ------ inclusion threshold ------
       0.05   12.7   3.8      0.046   12.8   3.8    1.0  1  BAF1_ABF1      BAF1 / ABF1 chromatin reorganising factor


Domain annotation for each model (and alignments):
>> AAA_lid_9  AAA lid domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.0   6.7e-07     0.006      37      79 ..      61     103 ..      40     128 .. 0.84
   2 ?   -1.8   6.3      0.33   2.9e+03      58      99 ..     129     170 ..     124     173 .] 0.54

  Alignments for each domain:
  == domain 1  score: 16.5 bits;  conditional E-value: 6.7e-07
   AAA_lid_9  37 krYisdrflPdkAIDllDeaaarvrlkkeskpeeleklekela 79 
                 kr++++r lP  A+Dl+ e + r+  ++ +++e++++l+++ +
  KOO24302.1  61 KRFVEQRILPNGALDLITEQGFRLPADEAQEQENVHRLQSRSW 103
                 8**********************************99998764 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 0.33
   AAA_lid_9  58 arvrlkkeskpeeleklekelaklekekealekeeekekaer 99 
                 a++++k  ++ +  +++ +  a+  + kea+++e e++k++r
  KOO24302.1 129 AKAKVKVAEEVAMATAAAAAAAAAATAKEAAKEEAEEAKRKR 170
                 444444445555555555555666666666666666666555 PP

>> BAF1_ABF1  BAF1 / ABF1 chromatin reorganising factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   3.8   5.1e-06     0.046      97     178 ..      87     168 ..      24     173 .] 0.78

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 5.1e-06
   BAF1_ABF1  97 dkenkkekteeseeatkasaeaeteslkkdeseenketqkkkeadaadedddvsaaiaaAVaavadsknakeekkeekakke 178
                 d+ +++e+ +  ++ +  s +++ ++l  d+++++k++ k +++ +++  ++v  a aaA aa+a  ++++++k+e++++k+
  KOO24302.1  87 DEAQEQENVHRLQSRSWPSFDSRVQTLFADAEAREKSAVKAEAKAKVKVAEEVAMATAAAAAAAAAATAKEAAKEEAEEAKR 168
                 44555667777777778888999999999999999999999999999999**999998888887777666666666555443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (173 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1783  (0.0994478); expected 358.6 (0.02)
Passed bias filter:                      566  (0.031569); expected 358.6 (0.02)
Passed Vit filter:                        66  (0.00368119); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.45u 0.24s 00:00:00.69 Elapsed: 00:00:00.39
# Mc/sec: 1327.25
//
Query:       KOO24303.1  [L=317]
Description: hypothetical protein Ctob_001510 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (317 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       449  (0.0250432); expected 358.6 (0.02)
Passed bias filter:                      419  (0.02337); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.42u 0.25s 00:00:00.67 Elapsed: 00:00:00.38
# Mc/sec: 2485.85
//
Query:       KOO24304.1  [L=189]
Description: hypothetical protein Ctob_001517 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.019   14.9   4.6      0.034   14.0   4.6    1.4  1  DREPP     DREPP plasma membrane polypeptide


Domain annotation for each model (and alignments):
>> DREPP  DREPP plasma membrane polypeptide
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   4.6   1.9e-06     0.034     121     187 ..      57     134 ..      38     143 .. 0.58

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 1.9e-06
       DREPP 121 fifekvstflpateekkkeepaateeaaaeeekskekeivveeaa............ekkeeeeekkeeteeaaaaaea 187
                   +ekv t+l   e++k e  aa++ a +e++++keke+vv +                 + ee k++e++++ +++e 
  KOO24304.1  57 DALEKVNTLLL-PEDEKWERLAAAKRADEEKAAEKEKEEVVAQVGhaqmayyaargrKIANVEEPKSDEAPAPGVQTEH 134
                 579*******6.555566666665555555556699***9998765666666655432222223333333333333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (189 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       927  (0.0517039); expected 358.6 (0.02)
Passed bias filter:                      546  (0.0304535); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.23s 00:00:00.64 Elapsed: 00:00:00.36
# Mc/sec: 1559.85
//
Query:       KOO24305.1  [L=217]
Description: hypothetical protein Ctob_001516 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (217 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       431  (0.0240393); expected 358.6 (0.02)
Passed bias filter:                      351  (0.0195772); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.40u 0.26s 00:00:00.66 Elapsed: 00:00:00.41
# Mc/sec: 1600.67
//
Query:       KOO24306.1  [L=598]
Description: phytoene desaturase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
      2e-73  248.2   0.0    2.3e-73  248.0   0.0    1.0  1  Amino_oxidase   Flavin containing amine oxidoreductase
    2.3e-16   59.8   0.1    5.6e-16   58.5   0.1    1.7  1  NAD_binding_8   NAD(P)-binding Rossmann-like domain
    3.6e-09   36.7   0.0    0.00045   19.9   0.0    2.3  2  DAO             FAD dependent oxidoreductase
    5.7e-07   29.0   0.0    8.5e-06   25.2   0.0    2.2  2  Pyr_redox_2     Pyridine nucleotide-disulphide oxidoreductase
    2.4e-06   28.0   0.0     0.0025   18.4   0.0    2.6  2  Pyr_redox       Pyridine nucleotide-disulphide oxidoreductase
    8.7e-06   24.8   0.0        0.1   11.4   0.0    2.1  2  MCRA            MCRA family
    0.00059   19.0   0.3      0.011   14.9   0.2    2.2  2  FAD_binding_2   FAD binding domain
     0.0017   17.1   0.2      0.005   15.6   0.2    1.7  2  HI0933_like     HI0933-like protein
     0.0029   16.9   0.1     0.0054   16.0   0.1    1.4  1  FAD_binding_3   FAD binding domain
     0.0061   15.5   0.0       0.79    8.5   0.0    2.4  2  Trp_halogenase  Tryptophan halogenase
     0.0077   15.5   0.2      0.015   14.5   0.2    1.5  1  Thi4            Thi4 family
     0.0091   15.4   0.0      0.017   14.5   0.0    1.5  1  FAD_oxidored    FAD dependent oxidoreductase
  ------ inclusion threshold ------
      0.012   14.0   0.1      0.022   13.2   0.1    1.3  1  FMO-like        Flavin-binding monooxygenase-like
       0.16   11.2   0.9       0.26   10.5   0.1    1.7  2  Pyr_redox_3     Pyridine nucleotide-disulphide oxidoreductase


Domain annotation for each model (and alignments):
>> Amino_oxidase  Flavin containing amine oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  248.0   0.0   1.8e-76   2.3e-73       1     451 [.      81     540 ..      81     541 .. 0.86

  Alignments for each domain:
  == domain 1  score: 248.0 bits;  conditional E-value: 1.8e-76
                    HHHHHHHHHHHHTTEEEEEEESSSSSBTTS-EEEET.TEEEESS--EEETTTHHHHHHHHHTTCCCCEEEESCCGCEEEEETTEECCTTEECHH.H CS
  Amino_oxidase   1 laGLaaArqLlsaGfdVtvlEardrvGGRirtvrsd.GylielGamwftgagnpllellkelgledslslpdpgapkrvlskggrefpgdlspv.p 94 
                    l+GL++A++L++aG++ +vlEar+ +GG+++ ++++ G +ie+G ++f+ga++++ +++ el++ed+l+++d+ + +++ ++ g++  ++++p  p
     KOO24306.1  81 LSGLSCAKYLSDAGHEPLVLEARGLLGGKVSAWQDEdGDWIETGLHIFFGAYPNMMNMFAELDIEDRLQWKDHKMTFAMQERPGEFTSFNFPPNvP 176
                    7*********************************************************************************************** PP

                    HHHHHHHHHHHHH.CHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHTSTTTTCBHHHHT CS
  Amino_oxidase  95 aewealleqgals.aellsleeklrlgleallqktldeldldskslaesleelgrrepgdvevwdrliepelfaklefasglfagdpselsaklal 189
                    a++++ +   +ls +e+l++eeklr    +l+  t+ + + d  + +  l++ ++++ + +   + +i         +  +l ++dp++ls+++ l
     KOO24306.1 177 APFNMAAA--ILSnTEMLTIEEKLRMVPGLLPMLTEGQSFIDAQDELSVLQFMEKYGMPRRINDEIFIA--------MGKALDFIDPDKLSMTVVL 262
                    ********..66688*****************4455555555555555555555555555222444444........8999999**********99 PP

                    CCCCHH.HHHTSCCCEETTHTHHHHHHHHH......TTTTEEEETSEEEEEEEE...ETTCEEEEETTSTEEEESEEEE-S-HHHHHSSEEES.CC CS
  Amino_oxidase 190 pllwel.egfggslllprgGlsqlpealae......elrgldirlntrVkeikr...egdgvtvtledgevveaDaVvvTvplgvlkailfsP.pl 274
                     +  ++ ++ +gs++   +G  + p++l++      e+rg+++r+n++V ei +   +g+  +++++dg+ v+aD +v+++p++vlk   ++P + 
     KOO24306.1 263 TAMNRFiNEADGSQTAFLDG--NQPDRLCApmkahiEARGGEVRTNAPVAEILTreeDGSVQGLRMQDGSIVTADIYVSAMPVDVLK--RLVPaRW 354
                    98765516666666666866..779999999999********************9666666**************************..9999633 PP

                    SH.HHHHHHHHSEEEEEEEEEEEESSGGSGCSTSE.CECECCCEEETTTEEEEECCECCCSTTTEEEEEEEEEC.HHHHH...HHTTS-HHHHHHH CS
  Amino_oxidase 275 pd.ekaeairnlgfgsvnkvilefdrkfwednalg.qgvlvseltttlgeafissdfpsrappgkglvllvyvg.gdaan...eleslsdeelvqa 364
                    +  + ++ +++l+  +v++v+++fdrk       + +g  +s+++ ++ +a +s+++ +++++ k+++ lv+ +    a     +  +sdee+++a
     KOO24306.1 355 STmPYFRQFDELEGIPVINVHIWFDRKLR-----SvDGLCFSRSPLLSVYADMSTTCKEYYDEEKSMLELVFAPcSPLAGgniNWIAKSDEEIIDA 445
                    4459************************3.....335679***************************777777766665511134567******** PP

                    HHHHHHHHHT.GTSSTCSE...........EEEEECCTETTTSSSEEE.BTTHHHHHHHHHHCHHCSTTEEE.SGGGCTTTTTSHHHHHHHHHHHH CS
  Amino_oxidase 365 vlrdLrklfg.eevpepka...........tlvtrWhtdplargsysyvsvgpghedydplakpegdprlffAGehtsreypgtvegAilSGlraA 448
                    ++ +L++lf+ e + +p++           +  +++  ++++r++y   ++ pg++ y+p++++ ++p+l++AG++ts++y g++egAil G+ aA
     KOO24306.1 446 TMGELARLFPlEIANDPRYpatskqgpqgqAKLRKYAVVKVPRSVY---AAIPGRNKYRPSQET-PIPNLVLAGDWTSQKYLGSMEGAILGGKLAA 537
                    ***********66666666667888887779999999999999888...***************.******************************* PP

                    HHH CS
  Amino_oxidase 449 ari 451
                    + +
     KOO24306.1 538 EVV 540
                    987 PP

>> NAD_binding_8  NAD(P)-binding Rossmann-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.5   0.1   4.4e-19   5.6e-16       1      68 []      76     142 ..      76     142 .. 0.97

  Alignments for each domain:
  == domain 1  score: 58.5 bits;  conditional E-value: 4.4e-19
                    EE--SHHHHHHHHHHHCCTEEEEEE-SSSSSSGGG-EECE.TTCEECTS---EEETTHHHHCHHHHCCC CS
  NAD_binding_8   1 IvGaGlsGlvaAylLakagfdvlllekrdrlGGraasyev.pgvrvdygahifhgsgyypnvrrllrel 68 
                    I+G+GlsGl++A +L++ag++ l+le+r  lGG+++ +++ +g ++++g hif+g   ypn++++++el
     KOO24306.1  76 IIGGGLSGLSCAKYLSDAGHEPLVLEARGLLGGKVSAWQDeDGDWIETGLHIFFG--AYPNMMNMFAEL 142
                    9**************************************9788************..5********997 PP

>> DAO  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.9   0.0   3.5e-07   0.00045       1      35 [.      73     108 ..      73     157 .. 0.89
   2 !   14.5   0.0   1.6e-05      0.02     144     200 ..     284     341 ..     257     363 .. 0.82

  Alignments for each domain:
  == domain 1  score: 19.9 bits;  conditional E-value: 3.5e-07
                 EEEEECTSHHHHHHHHHHHHTT..EEEEESSSSTTSS CS
         DAO   1 dvviiGGGiiGlstAyeLarrg..Vtllekgdiagsg 35 
                 +v+iiGGG  Gls+A +L+ +g   ++le++  +g g
  KOO24306.1  73 KVAIIGGGLSGLSCAKYLSDAGhePLVLEARGLLG-G 108
                 59*****************9999*******97777.3 PP

  == domain 2  score: 14.5 bits;  conditional E-value: 1.6e-05
                 EHHHHHHHHHHHHHHTT-EEEESECEEEE..EEEETCEEEEEEECT.EEEEEEEEEEE-- CS
         DAO 144 dpakltaalaraaealGveilegtevtgl..eeedgkvwgverttp.gendaadavVnaa 200
                 +p +l+a + + +ea+G+e++++++v ++  +eedg v+g+ r  + g++++ad  V a+
  KOO24306.1 284 QPDRLCAPMKAHIEARGGEVRTNAPVAEIltREEDGSVQGL-R-MQdGSIVTADIYVSAM 341
                 799*************************87766779*****.3.3448775558888887 PP

>> Pyr_redox_2  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.2   0.0   6.6e-09   8.5e-06     121     175 ..      39     104 ..      14     119 .. 0.86
   2 ?    1.2   0.0      0.14   1.8e+02     184     234 ..     287     340 ..     276     347 .. 0.85

  Alignments for each domain:
  == domain 1  score: 25.2 bits;  conditional E-value: 6.6e-09
                  TTBEECCSECHHHHHHCCSS-T...........SEEEEES-SHHHHHHHHHHHHHT-EEEEEESSS CS
                  xxxxxxxxxxxxxxxxxxxxxx...........xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2 121 envgklvrtldsaealklkllp...........krivvvGgGyiGvElAaalaklgkevtlveard 175
                  +  +kl +++++a al++kl+            ++++++GgG+ G+ +A +l+++g+e  ++ear 
   KOO24306.1  39 PPRIKLTDNYREATALSQKLTAcaaataqagkkQKVAIIGGGLSGLSCAKYLSDAGHEPLVLEARG 104
                  456889999999999999999999999999999*************************99999875 PP

  == domain 2  score: 1.2 bits;  conditional E-value: 0.14
                  HHHHHHHHHHHHTTEEEEESCEEEEEEETTE..EEE.EEETTSCEEEESEEEE- CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxx.xxxxxxxxxxxxxxxxx RF
  Pyr_redox_2 184 elsaaleealekeGvevklgtsvkeidgnge..kle.vvledgeeidadlvvva 234
                  +l a +++++e++G ev++++ v ei  ++e  +++ +  +dg+ + ad  v a
   KOO24306.1 287 RLCAPMKAHIEARGGEVRTNAPVAEILTREEdgSVQgLRMQDGSIVTADIYVSA 340
                  56667899999***************9999988888999999999999988765 PP

>> Pyr_redox  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.4   0.0   1.9e-06    0.0025       1      35 [.      73     107 ..      73     117 .. 0.90
   2 !    6.8   0.0    0.0078        10      38      80 ..     284     328 ..     276     329 .. 0.81

  Alignments for each domain:
  == domain 1  score: 18.4 bits;  conditional E-value: 1.9e-06
                 EEEEECSSHHHHHHHHHHHHTTSEEEEEESSSSSS CS
   Pyr_redox   1 kvvvvGgGyiglElAgalaelgkkVtvversdkll 35 
                 kv+++GgG++gl +A++l++ g++  v+e++  l 
  KOO24306.1  73 KVAIIGGGLSGLSCAKYLSDAGHEPLVLEARGLLG 107
                 79***********************9999987665 PP

  == domain 2  score: 6.8 bits;  conditional E-value: 0.0078
                 SSHHHHHHHHHHHHHTTEEEECSEEEEEEE.EETTS.EEEEEEET CS
   Pyr_redox  38 lDeeaskilqeklekngievllntkveeie.gsedg.vesvklkd 80 
                  ++ + + ++ ++e++g ev++n+ v+ei   +edg v++++++d
  KOO24306.1 284 QPDRLCAPMKAHIEARGGEVRTNAPVAEILtREEDGsVQGLRMQD 328
                 56667778999*****************98566778899998876 PP

>> MCRA  MCRA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.4   0.0   7.8e-05       0.1       2      77 ..      72     143 ..      71     163 .. 0.85
   2 !   11.3   0.0   8.6e-05      0.11     180     252 ..     264     329 ..     255     343 .. 0.81

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 7.8e-05
                 -EEEEE--SHHHHHHHHHHHHTT---GGGEEEE-SS-----------------CCC----B-TT-HHHHHHHTTSB CS
        MCRA   2 kkaylvGsGiasLaaAvyLirdakvpgenihileelkvaggsldgagdpekGyvlrggreleehyeclwdLlssip 77 
                 +k+ ++G+G+++L+ A yL   ++ ++    +le+  ++gg++  ++d++  ++  g   +   y ++++++++ +
  KOO24306.1  72 QKVAIIGGGLSGLSCAKYLSDAGH-EP---LVLEARGLLGGKVSAWQDEDGDWIETGLHIFFGAYPNMMNMFAELD 143
                 6788***************65544.43...79****************9988888888888999999999998765 PP

  == domain 2  score: 11.3 bits;  conditional E-value: 8.6e-05
                 HHHHTGGGGGGSTT-TT-B--SS-HHHHCCHHHHHHHHHTT-EEE-SEEEEEEEEEEE.TTEEEEEEEEEEE. CS
        MCRA 180 ylrrfiheisgledlsglkrtkynqyeslilPlvkyLkeqgVdfqfntkVtdiefeeeeedkktvteieleke 252
                 +++rfi+e +g    s+  + + nq + l++P++ +++++g ++++n+ V +i ++ee+     v+++++++ 
  KOO24306.1 264 AMNRFINEADG----SQTAFLDGNQPDRLCAPMKAHIEARGGEVRTNAPVAEILTREED---GSVQGLRMQDG 329
                 67888888666....56678999********************************9664...58999999864 PP

>> FAD_binding_2  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.2   8.5e-06     0.011       2      38 ..      74     111 ..      73     115 .. 0.88
   2 ?    1.9   0.0     0.073        94     142     184 ..     287     328 ..     225     338 .. 0.90

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 8.5e-06
                    EEEE--SHHHHHHHHHHHHTTT-EEEEESSSGGGS.GG CS
  FAD_binding_2   2 viViGsGlAGLaAAleaaeaGlkvavvekeqefgg.at 38 
                    v +iG+Gl+GL++A  +++aG++ +v+e  +  gg  +
     KOO24306.1  74 VAIIGGGLSGLSCAKYLSDAGHEPLVLEARGLLGGkVS 111
                    89**************************9988888444 PP

  == domain 2  score: 1.9 bits;  conditional E-value: 0.073
                    HHHHHHHHHHHTCTEEEEESEEEEEEEE..CTTEEEEEEEEETTT CS
  FAD_binding_2 142 allarlvesarkagvdfqerteadeLiv..edgrvtGavvenpes 184
                    +l+a++ ++++++g +++++++++e+++  edg v G  ++   +
     KOO24306.1 287 RLCAPMKAHIEARGGEVRTNAPVAEILTreEDGSVQGLRMQ---D 328
                    689999*********************966688****9887...3 PP

>> HI0933_like  HI0933-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.2   3.9e-06     0.005       2      39 ..      73     110 ..      72     112 .. 0.94
   2 ?   -2.1   0.0      0.89   1.1e+03     108     157 ..     285     336 ..     270     341 .. 0.70

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 3.9e-06
                  SEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSS-HHH CS
  HI0933_like   2 dviviGgGaAGlmaAisaakrgkrVlllekakklgrKi 39 
                  +v++iGgG +Gl +A  ++++g++ l+le+   lg K+
   KOO24306.1  73 KVAIIGGGLSGLSCAKYLSDAGHEPLVLEARGLLGGKV 110
                  79*****************************9999997 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 0.89
                  CHHHHHHHHHHHHHHT-EEE-S--EEEE..ECETTE.EEEEE.TTEEEEESE CS
  HI0933_like 108 aedivdallkelkeagvklrletevksv..ekeedgkfrvktkseeeleadk 157
                    ++   ++++++++g ++r++  v+++  ++e++++  +++++++ ++ad 
   KOO24306.1 285 PDRLCAPMKAHIEARGGEVRTNAPVAEIltREEDGSVQGLRMQDGSIVTADI 336
                  5566667889999**************9533344445556666666666665 PP

>> FAD_binding_3  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.1   4.2e-06    0.0054       3      33 ..      73     103 ..      71     105 .. 0.92

  Alignments for each domain:
  == domain 1  score: 16.0 bits;  conditional E-value: 4.2e-06
                    EEEEE--SHHHHHHHHHHHHTTHHEEEEESS CS
  FAD_binding_3   3 dVlIVGaGpaGlmlallLseaGvrvvlvekr 33 
                    +V+I+G+G++Gl+ a+ Ls aG + +++e r
     KOO24306.1  73 KVAIIGGGLSGLSCAKYLSDAGHEPLVLEAR 103
                    7***********************9999975 PP

>> Trp_halogenase  Tryptophan halogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.3   0.0     0.012        15       1      24 [.      73      96 ..      73     103 .. 0.87
   2 !    8.5   0.0   0.00061      0.79     165     205 ..     297     339 ..     281     342 .. 0.79

  Alignments for each domain:
  == domain 1  score: 4.3 bits;  conditional E-value: 0.012
                    EEEEE--SHHHHHHHHHHHHHTTT CS
  Trp_halogenase  1 kivivGGGtaGwlaAaalakalkg 24
                    k+ i+GGG +G   A +l+ a+++
      KOO24306.1 73 KVAIIGGGLSGLSCAKYLSDAGHE 96
                    799****************99855 PP

  == domain 2  score: 8.5 bits;  conditional E-value: 0.00061
                     HHC.T-EEEE--EEEEEE-T.TS-EEEEEETTS-EEE-SEEEE CS
  Trp_halogenase 165 ear.Gvtrvegkvvevqlde.dgrveslrledgreveadlfiD 205
                     ear G  r+++ v+e+ ++e dg+v++lr++dg  v ad+++ 
      KOO24306.1 297 EARgGEVRTNAPVAEILTREeDGSVQGLRMQDGSIVTADIYVS 339
                     556244456667777777777*******************995 PP

>> Thi4  Thi4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.5   0.2   1.2e-05     0.015      17      55 ..      71     108 ..      55     114 .. 0.85

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 1.2e-05
                 EEEEEEE--SHHHHHHHHHHHHCTTS-EEEEESSSS--T CS
        Thi4  17 esDvvivGaGssGLtaayylakkpdlkvailersvspGG 55 
                 ++ v+i+G+G sGL++a+yl+ + + + ++le++  +GG
  KOO24306.1  71 KQKVAIIGGGLSGLSCAKYLSDA-GHEPLVLEARGLLGG 108
                 5679******************9.999999999988887 PP

>> FAD_oxidored  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.5   0.0   1.3e-05     0.017       2      40 ..      74     112 ..      73     201 .. 0.89

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 1.3e-05
  FAD_oxidored   2 vvVvGGgpaGvaAAiaAaraGakvlLveergvlGGllts 40 
                   v ++GGg++G+ +A     aG + l++e rg lGG +++
    KOO24306.1  74 VAIIGGGLSGLSCAKYLSDAGHEPLVLEARGLLGGKVSA 112
                   89*********************************9985 PP

>> FMO-like  Flavin-binding monooxygenase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.1   1.7e-05     0.022       2      39 ..      72     109 ..      71     124 .. 0.89

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 1.7e-05
    FMO-like   2 kkvaviGaGvsGlasikccleegleptcfersddiGGl 39 
                 +kva+iG+G+sGl+  k   + g ep  +e    +GG 
  KOO24306.1  72 QKVAIIGGGLSGLSCAKYLSDAGHEPLVLEARGLLGGK 109
                 79****************************99999884 PP

>> Pyr_redox_3  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.1    0.0002      0.26       2      39 ..      76     113 ..      75     117 .. 0.80
   2 ?   -2.4   0.1       1.7   2.2e+03     176     196 ..     540     560 ..     525     569 .. 0.79

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.0002
  Pyr_redox_3   2 IiGaGPaGlaaaielkkagledylilEkg.nignsiyry 39 
                  IiG+G  Gl++a  l +ag  + l+lE    +g  ++ +
   KOO24306.1  76 IIGGGLSGLSCAKYLSDAGH-EPLVLEARgLLGGKVSAW 113
                  9******************9.579**9653566555555 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 1.7
  Pyr_redox_3 176 avDaAlelvrkgaeVtvvtrg 196
                   +D Al ++r +++V+vv r+
   KOO24306.1 540 VADKALGTARSTSRVKVVPRD 560
                  4799*************9887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (598 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       364  (0.0203023); expected 358.6 (0.02)
Passed bias filter:                      347  (0.0193541); expected 358.6 (0.02)
Passed Vit filter:                        50  (0.00278878); expected 17.9 (0.001)
Passed Fwd filter:                        14  (0.000780858); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              14  [number of targets reported over threshold]
# CPU time: 0.58u 0.28s 00:00:00.86 Elapsed: 00:00:00.43
# Mc/sec: 4150.27
//
Query:       KOO24307.1  [L=786]
Description: putative sphingosine kinase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (786 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       359  (0.0200234); expected 358.6 (0.02)
Passed bias filter:                      274  (0.0152825); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.61u 0.25s 00:00:00.86 Elapsed: 00:00:00.43
# Mc/sec: 5457.62
//
Query:       KOO24308.1  [L=411]
Description: hypothetical protein Ctob_001508 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    0.00085   19.2   0.0     0.0041   17.0   0.0    2.1  1  Galactosyl_T  Galactosyltransferase


Domain annotation for each model (and alignments):
>> Galactosyl_T  Galactosyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.0   0.0   2.3e-07    0.0041      70     175 ..     105     229 ..      41     238 .. 0.63

  Alignments for each domain:
  == domain 1  score: 17.0 bits;  conditional E-value: 2.3e-07
  Galactosyl_T  70 lllwavskvpeaklilkvDdDvyvnpdkLlsllkrelidpsessvygkvl.....kegavirkkkskwyvseeeykfsr.................. 143
                   +l+ a ++    +++ k+DdDvy++ + L + l +           g++l      +  + +  ++  + se++++  r                  
    KOO24308.1 105 WLEHALTYE--PRFVCKADDDVYLHLPDLEKHLLEIPAAAAPFAWVGRILyiqlaTSDINRTYTFH--HFSETAMQARRkhppelcaglsnvsvcag 197
                   344444554..59******************99998444444444444441100033333333333..33333344444667778888888999988 PP

  Galactosyl_T 144 yppyasGtlYvlsreavekllkaskhrkflkl 175
                     p+a G++Y+l   av  l+ +  hr+ l  
    KOO24308.1 198 PLPFACGPFYALGTAAVLALVRNHTHRRRLDS 229
                   999***********************998865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (411 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       342  (0.0190752); expected 358.6 (0.02)
Passed bias filter:                      283  (0.0157845); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.25s 00:00:00.71 Elapsed: 00:00:00.40
# Mc/sec: 3082.56
//
Query:       KOO24309.1  [L=777]
Description: hypothetical protein Ctob_001509, partial [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (777 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1593  (0.0888505); expected 358.6 (0.02)
Passed bias filter:                      537  (0.0299515); expected 358.6 (0.02)
Passed Vit filter:                        73  (0.00407162); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.78u 0.27s 00:00:01.05 Elapsed: 00:00:00.44
# Mc/sec: 5357.36
//
Query:       KOO24310.1  [L=434]
Description: hypothetical protein Ctob_001520 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.4e-09   37.9   8.1    2.7e-09   37.0   8.1    1.5  1  WW              WW domain
    6.8e-07   29.6   0.3    1.3e-06   28.6   0.3    1.5  1  PDZ             PDZ domain
     0.0084   15.9   0.2      0.021   14.7   0.2    1.7  1  PDZ_6           PDZ domain
  ------ inclusion threshold ------
      0.013   15.8   0.3       0.03   14.6   0.3    1.6  1  PDZ_2           PDZ domain
      0.018   15.3   0.1      0.036   14.3   0.1    1.5  1  Glyco_hyd_101C  Glycosyl hydrolase 101 beta sandwich domain


Domain annotation for each model (and alignments):
>> WW  WW domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.0   8.1   7.4e-13   2.7e-09       1      31 []     295     325 ..     295     325 .. 0.99

  Alignments for each domain:
  == domain 1  score: 37.0 bits;  conditional E-value: 7.4e-13
                 X-TTEEEEE-TTTT-EEEEETTT--EESS-- CS
          WW   1 LPpGWeeqwdpdsGrvYYyNheTgetqWekP 31 
                 LP GW+e++d +s ++YYyN  T++t+W+kP
  KOO24310.1 295 LPKGWVEYYDQQSSKHYYYNVHTKTTTWTKP 325
                 8*****************************9 PP

>> PDZ  PDZ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.6   0.3   3.7e-10   1.3e-06       8      81 ..      94     165 ..      86     166 .. 0.83

  Alignments for each domain:
  == domain 1  score: 28.6 bits;  conditional E-value: 3.7e-10
                 TTSESSEEEEEETTSSSSSSEEEEEECTTSHHHHHT.SSTTEEEEEETTEETTTSHHHHHHHHHHTTTSEEEEEE CS
         PDZ   8 grgglGfslkggsdqrgdkgifvsevlpggaaeadg.lkvGDkIlsvNgvdvenvsheeavqaikgskgkvtLti 81 
                  +  lG++ +  +d    kg++vs++ +g+  ++++ lkvGD++  +Ng++v++    ea ++++ +kg+++L+i
  KOO24310.1  94 ANDVLGITFDVPEDTL-LKGVVVSKLHEGSLIAKSKkLKVGDVVHVINGRPVVTP--PEALALLQDIKGVIQLVI 165
                 5677899999989985.9***********77777777***************865..678888888888899987 PP

>> PDZ_6  PDZ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   0.2   5.7e-06     0.021       4      54 ..     117     165 ..     114     167 .. 0.80

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 5.7e-06
       PDZ_6   4 aVdpgsPAdrAG.lrvGDiilsvNGqpveglsladvaallrgsagesvvlvv 54 
                    +gs  ++   l+vGD++  +NG+pv   ++ ++ all+ +    + lv+
  KOO24310.1 117 KLHEGSLIAKSKkLKVGDVVHVINGRPV--VTPPEALALLQ-DIKGVIQLVI 165
                 5556666566544***************..**********9.8777777776 PP

>> PDZ_2  PDZ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.6   0.3   8.3e-06      0.03       2      56 ..      97     154 ..      96     159 .. 0.86

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 8.3e-06
                 ...XX------....-EEEEEE-TTSGGGGT..--TT-EEEEETTB--SSHHHHHHHH CS
       PDZ_2   2 ylGvsvsdeed..tggvlvvsVkeggPaakag.lkagDvilkvdgkkvksledlisll 56 
                 +lG+++   ed   +gv+v + +eg+  ak++ lk gDv+  ++g++v + ++   ll
  KOO24310.1  97 VLGITFDVPEDtlLKGVVVSKLHEGSLIAKSKkLKVGDVVHVINGRPVVTPPEALALL 154
                 589999888876679************999999**************98877776665 PP

>> Glyco_hyd_101C  Glycosyl hydrolase 101 beta sandwich domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   0.1     1e-05     0.036      43     102 ..     273     329 ..     210     333 .. 0.76

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 1e-05
                     GGGG-EEEEETTEEEEETTEEEEEE-B-TTS-B--GGG-EEEEEESS-SEEEEE--HHHH CS
  Glyco_hyd_101C  43 eayrertitlngktvlkgesyLlPWnadatgkkekadeeklYhynpkggtstwkLpekwa 102
                     e   +  + ++g +++++++  lP  +    +  +++++k Y+yn +  t+tw+ p+k +
      KOO24310.1 273 ELVGQTAVEQAGLVIANEQQGNLPKGWV---EYYDQQSSKHYYYNVHTKTTTWTKPKKVQ 329
                     5666777788888888888888886654...57788899***************999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (434 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       733  (0.0408835); expected 358.6 (0.02)
Passed bias filter:                      439  (0.0244855); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.52u 0.26s 00:00:00.78 Elapsed: 00:00:00.43
# Mc/sec: 3025.58
//
Query:       KOO24311.1  [L=537]
Description: hypothetical protein Ctob_001521 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
          5    7.5   7.6        2.5    8.5   3.6    2.5  2  DUF2390   Protein of unknown function (DUF2390)


Domain annotation for each model (and alignments):
>> DUF2390  Protein of unknown function (DUF2390)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   0.1     0.092   1.6e+03      36      70 ..      93     127 ..      91     154 .. 0.76
   2 ?    8.5   3.6   0.00014       2.5      51     101 ..     479     536 ..     467     537 .] 0.79

  Alignments for each domain:
  == domain 1  score: -0.6 bits;  conditional E-value: 0.092
     DUF2390  36 alwlaeqgraldaeelaaleaavaewreevvkplR 70 
                 a w+a+++  ld++el ++    +++ +++  +lR
  KOO24311.1  93 AGWMAARECCLDQQELCEMLLLERALYSSAWSQLR 127
                 66888888888888887776666666666666665 PP

  == domain 2  score: 8.5 bits;  conditional E-value: 0.00014
     DUF2390  51 laaleaavaewreevvkplRal..Rralkaaase....dea.ealreqlkavELeaEr 101
                 ++++++a++e+r ++v  lR++  Rr++ ++a+e    +++ e+lr++l+ vE +aE+
  KOO24311.1 479 ADQFRRALHELRGKLVSALRDVatRRRAAREAEEdegaRAReEKLRHALALVEAAAEQ 536
                 5788999999**********86556666655555688755579*************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (537 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       717  (0.0399911); expected 358.6 (0.02)
Passed bias filter:                      357  (0.0199119); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.54u 0.25s 00:00:00.79 Elapsed: 00:00:00.41
# Mc/sec: 3918.98
//
Query:       KOO24312.1  [L=121]
Description: hypothetical protein Ctob_001507 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.19   11.5   3.4       0.22   11.3   3.4    1.1  1  Pex19     Pex19 protein family


Domain annotation for each model (and alignments):
>> Pex19  Pex19 protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   3.4   1.2e-05      0.22      32     119 ..      40     115 ..       4     120 .. 0.71

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 1.2e-05
       Pex19  32 dfeellkqleeaaeaaaeaksaeasssaaeskaeeesfqdiikkTlerLkesgdkvdaaaeseeknsddllaqlLkqLeagadvegeg 119
                   ++l++ le+ a++++++ s++a++      ++ +  + +i  +++ Lk s d++ aa        ++ l++ ++++e++a++ g+g
  KOO24312.1  40 GKRALVQRLEAEAASSKSGLSTKAKA------RKAKASNAVILGAVDGLKASLDELLAAN------AQEHLSNTMAAMEEKAKERGGG 115
                 44555666666555555555555444......35667899************99998887......99**********9998877765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (121 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       864  (0.0481901); expected 358.6 (0.02)
Passed bias filter:                      386  (0.0215294); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.25s 00:00:00.63 Elapsed: 00:00:00.40
# Mc/sec: 907.80
//
Query:       KOO24313.1  [L=673]
Description: DNA topoisomerase 6 subunit b [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    6.5e-50  169.1   0.0    1.2e-49  168.3   0.0    1.3  1  Topo-VIb_trans  Topoisomerase VI B subunit, transducer
    1.5e-07   31.4   0.5    5.7e-06   26.2   0.0    2.6  2  HATPase_c_3     Histidine kinase-, DNA gyrase B-, and HSP90-l
    3.4e-07   30.8   0.0      2e-06   28.3   0.0    2.1  1  HATPase_c       Histidine kinase-, DNA gyrase B-, and HSP90-l
    0.00065   18.6   0.0     0.0013   17.6   0.0    1.4  1  FbpA            Fibronectin-binding protein A N-terminus (Fbp


Domain annotation for each model (and alignments):
>> Topo-VIb_trans  Topoisomerase VI B subunit, transducer
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  168.3   0.0   2.6e-53   1.2e-49       3     158 ..     387     543 ..     386     544 .. 0.95

  Alignments for each domain:
  == domain 1  score: 168.3 bits;  conditional E-value: 2.6e-53
  Topo-VIb_trans   3 tdclspigeeliekglkkelkpefvaavtrkpkvyeghpfivEvgiayGGelekeekaeilRfaNrvPLlydegadvitkavk.sinwkrYkleq 96 
                      dclsp+ge++++ g++kel+pe+va+++    ++eghp+i+E+g+ +GG+ + +  ++++RfaNr+PLl++ gadv+t++ k +i+w +Yk++q
      KOO24313.1 387 VDCLSPVGEYNLRLGIMKELRPEMVATFQDAGCSHEGHPLIIEAGVCLGGR-DAKPGITVYRFANRIPLLFEGGADVATQVSKrRIHWATYKIRQ 480
                     58************************************************4.466777***********************9659********** PP

  Topo-VIb_trans  97 pedpvvvlvhvastkvPfksegKeaia.dveeiekeiklalqevarkLkkylskkekekeeke 158
                     ++d+v v+v+++stkvPfk++gKe+i+ d++e+++ +k+al++++ +Lk+ l k+++ +++ke
      KOO24313.1 481 NQDKVGVFVSLVSTKVPFKGTGKEYIGdDIPEVQQAVKRALEKCCLQLKATLLKQRALADDKE 543
                     **************************999**************************99888776 PP

>> HATPase_c_3  Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.6   0.1     0.025   1.1e+02       5      27 ..      45      72 ..      41     118 .. 0.75
   2 !   26.2   0.0   1.3e-09   5.7e-06      35      88 ..     144     196 ..     134     239 .. 0.71

  Alignments for each domain:
  == domain 1  score: 2.6 bits;  conditional E-value: 0.025
  HATPase_c_3  5 kAlaelvdNsldAdaen.....vkievn 27
                 + + elv+NsldA         ++i ++
   KOO24313.1 45 TTIRELVENSLDACESIrelpdIEIAIH 72
                 66889*******9543344555555555 PP

  == domain 2  score: 26.2 bits;  conditional E-value: 1.3e-09
  HATPase_c_3  35 eivieDdGkGmseeelknal.rlatsskeakrkstslGkkGiGlklAslslgkkl 88 
                  +++++D+G Gm+ e++ n+l r+ + sk+    ++++Gk+G+G k+A +++ ++ 
   KOO24313.1 144 RVTVRDNGCGMKHEQIPNMLgRVLSGSKYG--VRQTRGKFGLGAKMALIWSKQST 196
                  789***************8769*******5..79*************99976653 PP

>> HATPase_c  Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.3   0.0   4.5e-10     2e-06       4      98 ..      41     206 ..      38     221 .. 0.71

  Alignments for each domain:
  == domain 1  score: 28.3 bits;  conditional E-value: 4.5e-10
                 HHHHHHHHHHHHHHHHH.HS..TTTEEEE.............................................................EEEEEE... CS
   HATPase_c   4 krLrqiisnlvdNavkf.at..kageiev.............................................................eikase... 35 
                 k L+  i++lv+N++++ ++  + ++ie+                                                             +        
  KOO24313.1  41 KSLYTTIRELVENSLDAcESirELPDIEIaiheldgadlnkvlglatherrdealfkddeagkkkgkgkataaagaadagdddgeesvakR----Pggk 135
                 579999**********962234555666666888888888888888888888888888888888888877777776666666665543330....0333 PP

                 .....TEEEEEEEESSSSSTTHHHTGTCSTTCH.HCSTCHTS.TSSSHHHHHHHHHHH.HTTTEEEEEEET CS
   HATPase_c  36 .....ddlvisveDnGiGipkedlkklfekfsq.ddstkrgg.ggtGlGlsivkklve.lmgGeiwvesep 98 
                       +++++v+DnG+G+  e+++++ ++  + +++  r++ g +GlG++++  +++   g  + v+s++
  KOO24313.1 136 sksdtLYYRVTVRDNGCGMKHEQIPNMLGRVLSgSKYGVRQTrGKFGLGAKMALIWSKqSTGMPVDVRSSQ 206
                 3455689******************999966665555555555999****999875554666677776665 PP

>> FbpA  Fibronectin-binding protein A N-terminus (FbpA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.6   0.0   2.8e-07    0.0013     159     237 ..     299     379 ..     294     390 .. 0.88

  Alignments for each domain:
  == domain 1  score: 17.6 bits;  conditional E-value: 2.8e-07
                 XXSXXXSXBXTT..SXXH.HHHHHHHHH.S.XXXHHHHHHHBTTXXHHHHHHHHTTXSSSH...............HHHHHH CS
        FbpA 159 elPpsqdklnPl..eaeeleefkellsk.kekdlvkaLvkafqGlspllaeelleragldketsakelseedlerlyealqe 237
                 e+Pp+ + ++P   ++ + e +++ll++ kek+lvk+L+k f+ +   la  l+ ++ l++et a++l+ +++ +l++ +++
  KOO24313.1 299 EMPPTPSYIKPHpaSVHA-ELLQTLLREtKEKTLVKFLAKDFSCIDAKLAARLVDELRLERETDASALEHKQVVQLAHLMRD 379
                 678888888888524444.688888888*9**********************************************998776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (673 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       628  (0.0350271); expected 358.6 (0.02)
Passed bias filter:                      528  (0.0294495); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.63u 0.28s 00:00:00.91 Elapsed: 00:00:00.45
# Mc/sec: 4488.17
//
Query:       KOO24314.1  [L=389]
Description: hypothetical protein Ctob_001523, partial [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (389 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       433  (0.0241508); expected 358.6 (0.02)
Passed bias filter:                      262  (0.0146132); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.47u 0.23s 00:00:00.70 Elapsed: 00:00:00.40
# Mc/sec: 2913.29
//
Query:       KOO24315.1  [L=241]
Description: ubiquinol--cytochrome-c reductase-like protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.7e-11   43.9   0.3    2.8e-11   43.2   0.3    1.4  1  Rieske    Rieske [2Fe-2S] domain
    6.2e-09   36.2   0.3    1.1e-08   35.4   0.3    1.4  1  UCR_TM    Ubiquinol cytochrome reductase transmembrane region


Domain annotation for each model (and alignments):
>> Rieske  Rieske [2Fe-2S] domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.2   0.3   3.1e-15   2.8e-11      33      88 ..     174     228 ..     122     229 .. 0.81

  Alignments for each domain:
  == domain 1  score: 43.2 bits;  conditional E-value: 3.1e-15
                 TS-EEEEESC-TTTT-BCGGSEEETT.EEE-TTT--EEETTSBEEE-TTHHHEEEE CS
      Rieske  33 dgevyAlsdvCtHrgaplsegkidekgvleCpcHgwaydadGkvikgPaprplaty 88 
                 + e  +  +vCtH+g+ + +g++d +g   CpcHg+ yd++G+++kgPap +l+++
  KOO24315.1 174 KAETLVCIGVCTHLGCVPINGAGDYNG-WFCPCHGSHYDTSGRIRKGPAPLNLEIP 228
                 556668999***********9998774.56********************999876 PP

>> UCR_TM  Ubiquinol cytochrome reductase transmembrane region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.4   0.3   1.3e-12   1.1e-08      24      66 .]      70     112 ..      60     112 .. 0.94

  Alignments for each domain:
  == domain 1  score: 35.4 bits;  conditional E-value: 1.3e-12
      UCR_TM  24 sretedeRkaftylvlaggavvgayaaKsvVqkfvssmsASAD 66 
                  r +++++++f+y++ +g++++ga+aa+ +V+kf   m+++AD
  KOO24315.1  70 VRHSDPANRTFNYTMIGGARFMGASAARLLVVKFFAAMNPAAD 112
                 58899*************************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (241 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       357  (0.0199119); expected 358.6 (0.02)
Passed bias filter:                      317  (0.0176809); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.42u 0.25s 00:00:00.67 Elapsed: 00:00:00.41
# Mc/sec: 1766.90
//
Query:       KOO24316.1  [L=115]
Description: hypothetical protein Ctob_001518, partial [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      0.005   16.8   0.1     0.0068   16.3   0.1    1.2  1  CHS5_N    Chitin biosynthesis protein CHS5 N-terminus
     0.0072   16.5   0.0     0.0088   16.2   0.0    1.2  1  DUF3006   Protein of unknown function (DUF3006)
  ------ inclusion threshold ------
      0.035   13.7   0.9      0.066   12.8   0.2    1.8  2  P66_CC    Coiled-coil and interaction region of P66A and P66B


Domain annotation for each model (and alignments):
>> CHS5_N  Chitin biosynthesis protein CHS5 N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.1   1.1e-06    0.0068       4      48 .]      45      91 ..      42      91 .. 0.87

  Alignments for each domain:
  == domain 1  score: 16.3 bits;  conditional E-value: 1.1e-06
      CHS5_N  4 ftvGKlDAglAiLl..tedahliEFPsvLLPegveaGSivdisvsrn 48
                +tvG +D   A++   te  h+   P  LLP+g  aG i+ ++ +r+
  KOO24316.1 45 VTVGEVDGDSAVISmgTEPPHVFRLPLALLPPGTAAGNIILLQTMRD 91
                799***99988864338899********************9998886 PP

>> DUF3006  Protein of unknown function (DUF3006)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.0   1.5e-06    0.0088       2      65 ..      46     108 ..      45     115 .] 0.81

  Alignments for each domain:
  == domain 1  score: 16.2 bits;  conditional E-value: 1.5e-06
     DUF3006   2 viDRfEgdlAVleled..getidiprsdLpegakeGdvLeieddeieldpeetekrkeriqelldr 65 
                 ++ +++gd AV+  +    +++ +p+ +Lp+g+  G ++ ++      d  + ++r++ i++l+ +
  KOO24316.1  46 TVGEVDGDSAVISMGTepPHVFRLPLALLPPGTAAGNIILLQ---TMRDSGAVQERERGIRALQAE 108
                 5667899******9997667799*******************...777777777777777777655 PP

>> P66_CC  Coiled-coil and interaction region of P66A and P66B with MBD2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.0      0.39   2.3e+03      25      33 ..      84      92 ..      83      92 .. 0.84
   2 ?   12.8   0.2   1.1e-05     0.066       4      19 ..      96     111 ..      93     112 .. 0.91

  Alignments for each domain:
  == domain 1  score: -1.7 bits;  conditional E-value: 0.39
      P66_CC 25 vLLkKLRqS 33
                +LL+ +R S
  KOO24316.1 84 ILLQTMRDS 92
                799999977 PP

  == domain 2  score: 12.8 bits;  conditional E-value: 1.1e-05
      P66_CC   4 eeRermikkLreeLRn 19 
                 +eRer i++L++e R+
  KOO24316.1  96 QERERGIRALQAEIRA 111
                 8*************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (115 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       274  (0.0152825); expected 358.6 (0.02)
Passed bias filter:                      203  (0.0113224); expected 358.6 (0.02)
Passed Vit filter:                        10  (0.000557756); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.36u 0.22s 00:00:00.57 Elapsed: 00:00:00.38
# Mc/sec: 908.39
//
Query:       KOO24317.1  [L=557]
Description: dihydroxy-acid dehydratase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   2.4e-180  600.6   2.5   2.7e-180  600.4   2.5    1.0  1  ILVD_EDD  Dehydratase family


Domain annotation for each model (and alignments):
>> ILVD_EDD  Dehydratase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  600.4   2.5  1.5e-184  2.7e-180       1     517 []      20     554 ..      20     554 .. 0.96

  Alignments for each domain:
  == domain 1  score: 600.4 bits;  conditional E-value: 1.5e-184
    ILVD_EDD   1 kpiigiansyselvpchvhlkelaeavkegveeaggvpaefntigvsDgiamgeegmrysLpsReliadsvetmleaqllDalvlisgCDKivPgllma 99 
                 kp+i++   y++++pc+ ++ +la+av e++e++gg ++  +t  +sDg ++g+ gmrysL+sRe iad++e+m+e++ +Da+++++gCDK+vP+ lm 
  KOO24317.1  20 KPVITVGVPYTNVMPCNNKFMDLANAVCEAIEAEGGKAMLATTPIISDGQTQGTLGMRYSLVSREYIADCIEIMHEGYAADAMICLAGCDKSVPAALMP 118
                 8************************************************************************************************** PP

    ILVD_EDD 100 aarlniPaifvsgGpmeagkkk.........kldlssvfeavgalaagkiseeeleeleeaacpgaGsCsgmgTAntmaclaealGlslpgsasipats 189
                  arl+i  + + gGp ++gk+          +ld  sv+e +ga+ ag i++eel +le+++ pg G+Cs m+TA tma+++ealG+++p + s  a++
  KOO24317.1 119 LARLDIVGLTLFGGPALPGKCAtlkgrskgkQLDPGSVMEGIGAYGAGLIDDEELYKLECHSLPGSGTCSAMFTACTMATVIEALGMCVPMTCSPAAVT 217
                 ******************775455666777799999**********************************************************99999 PP

    ILVD_EDD 190 ......aerkelaeeagkrivelvekdlkprdiltkeafeNAivvllalGGStNavlHllAiAreagveltlddfdelsrkvpllaklkPsgkydmedl 282
                       + + + ++++ k++ +l++ ++++r+ilt++afeNA++++ alGGStNavlH+lA+A eagv +t++dfd+++++vpl+ +l+P+g ++m dl
  KOO24317.1 218 ekneinPVKLADVRASVKALFALMRGEVTARSILTRKAFENAVAIVYALGGSTNAVLHVLALAWEAGVPFTIEDFDAIGKRVPLIGNLSPHGPHHMVDL 316
                 66666666778899999999***9999************************************************************************ PP

    ILVD_EDD 283 hraGGvpavlkeLlkagllhgdvltvtgktlaenleeaev....keqdvirplekplskeg.glavLkGnLapeGavvKtsaveeellkfegpArvfds 376
                 h++GGvp v++ Ll+agl+hgd+ltvtgkt+a+nl+e +     + q+v+ pl++pls++g ++ vLkG+Lap +av+K s+++  l +fegpA++fds
  KOO24317.1 317 HAMGGVPRVFQILLDAGLVHGDALTVTGKTWAQNLKELALpplpAGQTVVMPLSAPLSAAGkHIIVLKGSLAPPSAVMKLSGKS--LATFEGPAVCFDS 413
                 ***********************************8854568889****************89********************9..999********** PP

    ILVD_EDD 377 eeeaveailkgkikagdvvviryeGPkGgpGmpEmlkptsallgkglgkkvalitDGRfSGaskglvighvsPEAaegGpialvedGDiieidiekrtl 475
                 e +a++ai++gki +g+++viryeGPkG+pGmpEml+p +al+g+glg +val+tDGRfSGas+g++ighv+PEA +gGp+a+v+dGDi++id +++tl
  KOO24317.1 414 EMDAFTAIMAGKIVKGHCLVIRYEGPKGAPGMPEMLSPGAALVGQGLGPHVALVTDGRFSGASHGIMIGHVTPEARDGGPLAVVRDGDIVRIDTKAQTL 512
                 *************************************************************************************************** PP

    ILVD_EDD 476 elevseeelaaRraawkpekkvktrgllakyaklvssaseGA 517
                 +l++s ee+aaR +aw+p ++++t+g+laky+klv+sa+ GA
  KOO24317.1 513 DLAISTEEIAARLKAWSPPPEKATKGTLAKYTKLVQSAHLGA 554
                 ******************666667****************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (557 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       301  (0.0167884); expected 358.6 (0.02)
Passed bias filter:                      266  (0.0148363); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.23s 00:00:00.72 Elapsed: 00:00:00.38
# Mc/sec: 4384.25
//
Query:       KOO24318.1  [L=2040]
Description: patched domain-containing protein 2-like protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    7.8e-06   24.3  24.1    0.00078   17.7  19.1    2.4  2  Patched         Patched family
    8.6e-06   25.7   3.1    8.6e-06   25.7   3.1    3.2  2  Sterol-sensing  Sterol-sensing domain of SREBP cleavage-activ
  ------ inclusion threshold ------
        1.6    9.0   3.3        6.1    7.1   0.0    3.4  3  Holin_SPP1      SPP1 phage holin


Domain annotation for each model (and alignments):
>> Patched  Patched family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.8   0.2     6e-05      0.36     293     369 ..     456     539 ..     418     560 .. 0.88
   2 !   17.7  19.1   1.3e-07   0.00078     658     806 ..    1796    1943 ..    1769    1947 .. 0.90

  Alignments for each domain:
  == domain 1  score: 8.8 bits;  conditional E-value: 6e-05
     Patched 293 vLaiGvDdmflmvaawkrteakls.......vkkrigealseagvaitiTslTdvlsFgiGaittlpaiqlFciytavailfdf 369
                 v+++  D++f++ + w + ++  +        ++ri+ ++ +a v ++  + T ++s  i +++++  +  F +  +  i+++f
  KOO24318.1 456 VVGVSADNIFVLHETWAQSRMLMNrrgqpasEEERIEWTVRQASVPLFYANATTAASLFINCLSEIKSVYQFGLCGGTLIFINF 539
                 555566***********999988888999999****************************************999999999888 PP

  == domain 2  score: 17.7 bits;  conditional E-value: 1.3e-07
     Patched  658 stiqnivlallcmfvvallfipelitvlvitlsivsidigviGflslWgvdLDpismitiimsiGfsvdlsaHiayafvrsekddakeRvvealeal 754 
                  +     v+ +++m+++a lf  +li++ v+   ++++ + ++G++ l  + L   s  ++ + +G svd+  H a+a+ +s   d + + ++++ a 
  KOO24318.1 1796 VSTALTVTPFVSMAAIA-LFSRSLIISYVALYCLIAMVVTLLGVMKLLAIPLGVTSALALSLVVGMSVDYIIHLAHAYKNSLFADRFYKSRATVFAR 1891
                  44444567789999997.799************************************************************9989999999999999 PP

     Patched  755 gwPvvqgalSTilgvlvLlfvdsymvqvFfktvvLvvvigllHgLlilPill 806 
                  +  +v +a  T+l+v+ +l     + + F +  +Lv ++++   L +l +l+
  KOO24318.1 1892 ASSIVSSAATTLLAVSPVLAAQLLLLREFGQIFFLVTIVSACFSLAFLVVLM 1943
                  ***********************************************98876 PP

>> Sterol-sensing  Sterol-sensing domain of SREBP cleavage-activation
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.7   3.1   1.4e-09   8.6e-06      23     139 ..     433     556 ..     396     561 .. 0.80
   2 ?   -5.2  13.0         3   1.8e+04       8     128 ..    1820    1938 ..    1812    1948 .. 0.75

  Alignments for each domain:
  == domain 1  score: 25.7 bits;  conditional E-value: 1.4e-09
                     HCCHHH.HHHHHHHHHHHHHHHHHHHHHCHHCCHHCHHHHHHHHTTTCH.......HHHHHHHHHHHCCCCHHCCCHHHHHHHHHHHCCHHHHHH CS
  Sterol-sensing  23 slglla.ylgltltliilevlPflvlavgvdnifvlvkavqrtsrslde.......seriaealgevgpsilltsltellalllgaltdvpavqe 109
                      + ++  +++ tl+   +     +v+ v+ dnifvl +++ ++    +        +eri  +++++++ ++   +t +++l++  l++++ v +
      KOO24318.1 433 YFVVCViFFESTLSAFAA-ASLAVVVGVSADNIFVLHETWAQSRMLMNRrgqpaseEERIEWTVRQASVPLFYANATTAASLFINCLSEIKSVYQ 526
                     444444144555555554.55568999************98876655555556788*************************************** PP

                     HHHHHHHHHHHHHHHHHTHHHHHHHHHHHH CS
  Sterol-sensing 110 FclfaavavlvdFllqitfFvavLsldirr 139
                     F l     ++++F l  +   a+L l++r 
      KOO24318.1 527 FGLCGGTLIFINFGLCGVYLPALLLLEERG 556
                     *****************9999999998875 PP

  == domain 2  score: -5.2 bits;  conditional E-value: 3
                      HHHHHHHHHHCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCHHCCHHCHHHHHHHHTTTCHHHHHHHHHHHHCCCCHHCCCHHHHHHHHHH CS
  Sterol-sensing    8 LglagviivllsvasslgllaylgltltliilevlPflvlavgvdnifvlvkavqrtsrsldeseriaealgevgpsilltsltellalllga 100 
                      ++ +++ ++++ v+  lg++ +l ++l   ++ ++  lv+ ++vd i  l +a++++    +  +  a ++ + + si+++++t lla    +
      KOO24318.1 1820 ISYVALYCLIAMVVTLLGVMKLLAIPLGVTSA-LALSLVVGMSVDYIIHLAHAYKNSLFADRFYKSRATVFAR-ASSIVSSAATTLLAVSPVL 1910
                      555666677777777899999*9999999988.8899******************988777765544555654.6788888999998888666 PP

                      HCCHHHHHHHHHHHHHHHHHHHHHHHTH CS
  Sterol-sensing  101 ltdvpavqeFclfaavavlvdFllqitf 128 
                      + ++  ++eF     +  +v+  + + f
      KOO24318.1 1911 AAQLLLLREFGQIFFLVTIVSACFSLAF 1938
                      7888899999866665555555555444 PP

>> Holin_SPP1  SPP1 phage holin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.1   0.0     0.001       6.1      36      67 ..     977    1009 ..     963    1014 .. 0.77
   2 ?   -0.8   0.3       0.3   1.8e+03       8      30 ..    1102    1125 ..    1095    1131 .. 0.82
   3 ?   -2.0   0.8      0.68     4e+03      12      48 ..    1800    1836 ..    1795    1876 .. 0.70

  Alignments for each domain:
  == domain 1  score: 7.1 bits;  conditional E-value: 0.001
  Holin_SPP1   36 alytaitlvftvataivawyKNny.vTkkakkq 67  
                   l   +++ f ++ a+vaw+K n+ v   +   
  KOO24318.1  977 LLGHGLMVLFFGVSALVAWFKANNpVVCDGNDG 1009
                  56788999*************665487777655 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 0.3
  Holin_SPP1    8 vrtillllallnqll.tilGknpl 30  
                  + ti+l+lal+  +   ++G +++
  KOO24318.1 1102 AGTIVLILALIPEAFnAAFGPRAI 1125
                  569********9988788887766 PP

  == domain 3  score: -2.0 bits;  conditional E-value: 0.68
  Holin_SPP1   12 llllallnqlltilGknplpideealytaitlvftva 48  
                  l +  +++++ ++l  ++l i+  aly +i +v+t++
  KOO24318.1 1800 LTVTPFVSMAAIALFSRSLIISYVALYCLIAMVVTLL 1836
                  5555566666666666666666666666666666654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (2040 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       774  (0.0431703); expected 358.6 (0.02)
Passed bias filter:                      349  (0.0194657); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 1.03u 0.29s 00:00:01.32 Elapsed: 00:00:00.47
# Mc/sec: 13010.52
//
Query:       KOO24319.1  [L=187]
Description: fad-binding family protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.3e-09   37.3   1.0    6.7e-09   35.8   1.0    1.7  1  DAO       FAD dependent oxidoreductase


Domain annotation for each model (and alignments):
>> DAO  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.8   1.0   3.7e-13   6.7e-09     300     352 .]     102     156 ..       2     156 .. 0.70

  Alignments for each domain:
  == domain 1  score: 35.8 bits;  conditional E-value: 3.7e-13
                 CGEEEEEEEEEE..ETTSSEEEEEEETEEEEEEEEECTTTHHHHHHHHHHHHHHH CS
         DAO 300 gdvlrkwaGlrp..lpdglpligetpgvkglylatGhsghGltlapatGkllael 352
                   vl +waG +   + d + +ig +p  ++++++ G+sghGl++apa+G+++ael
  KOO24319.1 102 HQVLGSWAGWYEynTFDQNAIIGWHPDLPNVVHLNGFSGHGLQHAPAAGRAVAEL 156
                 24778*******7448********9999*************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (187 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       228  (0.0127168); expected 358.6 (0.02)
Passed bias filter:                      219  (0.0122148); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.27s 00:00:00.68 Elapsed: 00:00:00.43
# Mc/sec: 1320.74
//
Query:       KOO24320.1  [L=243]
Description: death-specific protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.7e-12   45.3   0.6    2.3e-07   29.9   0.0    2.3  2  EF-hand_1     EF hand
    9.3e-10   38.8   0.4    1.4e-09   38.3   0.4    1.3  1  EF-hand_7     EF-hand domain pair
    7.8e-09   34.8   0.1    6.9e-06   25.6   0.0    2.3  2  EF-hand_6     EF-hand domain
    6.8e-08   31.7   0.8    5.2e-06   25.7   0.1    2.4  2  EF-hand_5     EF hand
    1.2e-07   31.4   1.4    1.4e-05   24.9   0.4    2.2  2  EF-hand_8     EF-hand domain pair
     0.0072   16.3   0.1       0.63   10.0   0.1    2.2  2  EF-hand_4     Cytoskeletal-regulatory complex EF hand
  ------ inclusion threshold ------
      0.014   15.7   0.0      0.055   13.8   0.0    1.7  2  SPARC_Ca_bdg  Secreted protein acidic and rich in cysteine Ca
      0.019   14.3   0.1      0.025   13.9   0.1    1.2  1  DUF2226       Uncharacterized protein conserved in archaea (D
        3.1    7.2   8.5        5.7    6.3   6.6    2.0  2  CAP_N         Adenylate cyclase associated (CAP) N terminal


Domain annotation for each model (and alignments):
>> EF-hand_1  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.9   0.0   1.2e-10   2.3e-07       2      29 .]     159     186 ..     158     186 .. 0.95
   2 !   13.6   0.1   1.8e-05     0.035       5      23 ..     199     217 ..     196     218 .. 0.90

  Alignments for each domain:
  == domain 1  score: 29.9 bits;  conditional E-value: 1.2e-10
                 HHHHHHHHTTTSSSEEEHHHHHHHHHHH CS
   EF-hand_1   2 lkeiFrefDkDgdGkIdfeEfkellkkl 29 
                 ++++F+ +DkDg+G +d+eE++++lk+l
  KOO24320.1 159 IRKMFEAADKDGSGGVDKEELRAALKAL 186
                 89***********************985 PP

  == domain 2  score: 13.6 bits;  conditional E-value: 1.8e-05
                 HHHHHTTTSSSEEEHHHHH CS
   EF-hand_1   5 iFrefDkDgdGkIdfeEfk 23 
                 i + +D+ gd  IdfeEf+
  KOO24320.1 199 ILERADTSGDEVIDFEEFV 217
                 67899*************8 PP

>> EF-hand_7  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.3   0.4     7e-13   1.4e-09       3      68 ..     158     218 ..     156     220 .. 0.90

  Alignments for each domain:
  == domain 1  score: 38.3 bits;  conditional E-value: 7e-13
   EF-hand_7   3 klkeaFkelDtdgdgyldkeellrllrkifqgagegsklsdee.lellfkefDtdkdGvisfdEFlk 68 
                 +++ +F++ D+dg+g +dkeel+ +l+        g+++ +e+ +  +++  Dt++d vi+f+EF+k
  KOO24320.1 158 VIRKMFEAADKDGSGGVDKEELRAALK------ALGFDFLEEKqVSGILERADTSGDEVIDFEEFVK 218
                 68999******************9**9......77788777555*********************97 PP

>> EF-hand_6  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.6   0.0   3.4e-09   6.9e-06       2      31 .]     159     187 ..     158     187 .. 0.95
   2 !    6.9   0.0    0.0033       6.6       9      24 ..     203     218 ..     199     225 .. 0.90

  Alignments for each domain:
  == domain 1  score: 25.6 bits;  conditional E-value: 3.4e-09
   EF-hand_6   2 lreaFklfDkdgdGkidaeElrkalrkalg 31 
                 +r+ F++ Dkdg+G +d+eElr+al+ alg
  KOO24320.1 159 IRKMFEAADKDGSGGVDKEELRAALK-ALG 187
                 799***********************.887 PP

  == domain 2  score: 6.9 bits;  conditional E-value: 0.0033
   EF-hand_6   9 fDkdgdGkidaeElrk 24 
                  D++gd  id+eE++k
  KOO24320.1 203 ADTSGDEVIDFEEFVK 218
                 59************75 PP

>> EF-hand_5  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.7   0.1   2.6e-09   5.2e-06       1      23 [.     159     181 ..     159     184 .. 0.91
   2 ?    4.1   0.1     0.018        37       6      21 ..     201     216 ..     198     222 .. 0.86

  Alignments for each domain:
  == domain 1  score: 25.7 bits;  conditional E-value: 2.6e-09
                 HHHHHHHH-SS-SSCE-HHHHHH CS
   EF-hand_5   1 lkdtFqaiDlNgDGkIskeELkt 23 
                 ++++F+a+D++g+G ++keEL++
  KOO24320.1 159 IRKMFEAADKDGSGGVDKEELRA 181
                 689******************97 PP

  == domain 2  score: 4.1 bits;  conditional E-value: 0.018
                 HHH-SS-SSCE-HHHH CS
   EF-hand_5   6 qaiDlNgDGkIskeEL 21 
                 +++D+ gD  I++eE+
  KOO24320.1 201 ERADTSGDEVIDFEEF 216
                 6789999999*****9 PP

>> EF-hand_8  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.6   0.0   4.8e-05     0.095      25      53 ..     156     184 ..     141     186 .. 0.83
   2 !   24.9   0.4   6.8e-09   1.4e-05       2      49 ..     171     217 ..     170     218 .. 0.92

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 4.8e-05
   EF-hand_8  25 eeevdilfrefDtdgdGkisfeEFcvlle 53 
                    ++ +f ++D dg+G +++eE  + l+
  KOO24320.1 156 QLVIRKMFEAADKDGSGGVDKEELRAALK 184
                 556888*****************988775 PP

  == domain 2  score: 24.9 bits;  conditional E-value: 6.8e-09
   EF-hand_8   2 kgkItreelrrilrilglkkglseeevdilfrefDtdgdGkisfeEFc 49 
                 +g +++eelr +l++lg    l e++v  ++ ++Dt gd +i+feEF+
  KOO24320.1 171 SGGVDKEELRAALKALGFD-FLEEKQVSGILERADTSGDEVIDFEEFV 217
                 799**********999877.488889*********************7 PP

>> EF-hand_4  Cytoskeletal-regulatory complex EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.5   0.0    0.0038       7.6      40      79 ..     154     194 ..     135     197 .. 0.79
   2 !   10.0   0.1   0.00031      0.63      40      66 ..     191     217 ..     185     230 .. 0.93

  Alignments for each domain:
  == domain 1  score: 6.5 bits;  conditional E-value: 0.0038
   EF-hand_4  40 leedklekiwdladidedgkldfeefciamr.lifdlvnge 79 
                 + +  + k+++ ad d  g +d ee+  a++ l fd+++++
  KOO24320.1 154 FGQLVIRKMFEAADKDGSGGVDKEELRAALKaLGFDFLEEK 194
                 44556789******************999984679998876 PP

  == domain 2  score: 10.0 bits;  conditional E-value: 0.00031
   EF-hand_4  40 leedklekiwdladidedgkldfeefc 66 
                 lee++++ i + ad   d+ +dfeef+
  KOO24320.1 191 LEEKQVSGILERADTSGDEVIDFEEFV 217
                 7899**********************8 PP

>> SPARC_Ca_bdg  Secreted protein acidic and rich in cysteine Ca binding region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.8   0.0      0.31   6.1e+02      69      97 ..     121     150 ..      93     158 .. 0.78
   2 ?   13.8   0.0   2.8e-05     0.055      42     111 ..     145     217 ..     125     218 .. 0.80

  Alignments for each domain:
  == domain 1  score: 0.8 bits;  conditional E-value: 0.31
  SPARC_Ca_bdg  69 kvlsksELaplraplv.klehCikpflesc 97 
                    ++ ++EL++lr +++ ++ + i++f+++ 
    KOO24320.1 121 ALMGEEELNKLRGEVIaQHSKVISAFVDTS 150
                   678899*****9876525677888888765 PP

  == domain 2  score: 13.8 bits;  conditional E-value: 2.8e-05
  SPARC_Ca_bdg  42 kkeeeknlkeckepvawkFsklDtnsdkvlsksELaplrapl...vklehCikpflescDadkdkkislkEwc 111
                   +  ++++++  +  ++ +F+  D++  + ++k+EL++  + l      e+ ++  le++D+  d+ i+ +E++
    KOO24320.1 145 AFVDTSESPFGQLVIRKMFEAADKDGSGGVDKEELRAALKALgfdFLEEKQVSGILERADTSGDEVIDFEEFV 217
                   55566667777788999******************87666663323468899*******************97 PP

>> DUF2226  Uncharacterized protein conserved in archaea (DUF2226)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.1   1.3e-05     0.025     177     238 ..     147     234 ..      92     240 .. 0.73

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 1.3e-05
     DUF2226 177 t..........................vsReel...LkKlGikepdeesietiledvfepsdeelaeddleelkekilseivlkvkrmegv 238
                                            v++eel   Lk lG +  +e+++  ile +  + de++   d+ee+ ++  +++  ++ ++ ++
  KOO24320.1 147 VdtsespfgqlvirkmfeaadkdgsggVDKEELraaLKALGFDFLEEKQVSGILERADTSGDEVI---DFEEFVKETPRTLRTNLIKLAKK 234
                 0444445555555555555555555668888877779********************99889999...*****999999988888887766 PP

>> CAP_N  Adenylate cyclase associated (CAP) N terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.3   6.6    0.0028       5.7     226     288 ..      61     120 ..      39     132 .. 0.58
   2 ?    0.4   0.0      0.18   3.6e+02      58     103 ..     186     232 ..     156     237 .. 0.76

  Alignments for each domain:
  == domain 1  score: 6.3 bits;  conditional E-value: 0.0028
                 BE.......SSC--XXXXXXX....XXXXXXXX.....XXXXXXXXXXXXXXXXXXXXXXXXX CS
       CAP_N 226 kdaeealkaaaaaasaaaaggpppPpPpPppasvfeeesaaasasaaaggmsavFaeLnkGea 288
                  da++a+ a a ++s +++ gp+p++P   pa+v   e++ a+++++++ ++ +Fa + kG++
  KOO24320.1  61 ADAAAAAVAVAGSPSDSSSWGPAPAAPAVEPAAV---EKKPAAEKKRKPAANGIFAPIVKGAK 120
                 2233333234444444444454444443334443...44457889999999*******99986 PP

  == domain 2  score: 0.4 bits;  conditional E-value: 0.18
                 HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH.HHHHH CS
       CAP_N  58 eaFdelisgsvkefvelskkiggevaeqaelvkkafeaqrk.fllva 103
                   Fd l +++v+ ++e ++  g+ev +  e+vk++ ++ r+ ++++a
  KOO24320.1 186 LGFDFLEEKQVSGILERADTSGDEVIDFEEFVKETPRTLRTnLIKLA 232
                 5689999999******************9999999888776144444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (243 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       570  (0.0317921); expected 358.6 (0.02)
Passed bias filter:                      469  (0.0261587); expected 358.6 (0.02)
Passed Vit filter:                        53  (0.0029561); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.44u 0.26s 00:00:00.70 Elapsed: 00:00:00.40
# Mc/sec: 1829.58
//
Query:       KOO24321.1  [L=239]
Description: fad dependent oxidoreductase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.7e-24   87.1   2.6    2.1e-24   86.8   2.6    1.1  1  DAO       FAD dependent oxidoreductase


Domain annotation for each model (and alignments):
>> DAO  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   86.8   2.6   1.2e-28   2.1e-24      10     201 ..       1     215 [.       1     226 [. 0.79

  Alignments for each domain:
  == domain 1  score: 86.8 bits;  conditional E-value: 1.2e-28
                 HHHHHHHHHH.HTT....EEEEESSSSTTSSGGGSSEEEEESSSSTHHSTHHHHHHHHHHHHHHHHHH.......HHHSSTTSEEEEEEEEEESSHHHH CS
         DAO  10 iGlstAyeLa.rrg....VtllekgdiagsgaSgrnsgllhsglrylpeaselarlslealeelrele.......eelgididyrrtGllslaadeeel 96 
                 +G+s Ay+La +rg    ++++e+++    ++   ++g ++++++ l+e+   +++s +++++l++ +       + + +d++++++G+l+la+ ++  
  KOO24321.1   1 MGSSLAYHLAaARGtgegIVVIERDSSYKVASAMLSAGGIRQQFS-LREN---VQMSMYGIDFLKRSAallavddDAEPVDVQFQERGYLFLAS-AAGH 94 
                 69*******845667799*******999999999**********8.6644...5999999999955552334544223459***********95.5679 PP

                 HHHHHHHHHHHHTTTTE.EEEEHHHHHHHSTT..STTTS.EEEEETTEEEEEHHHHHHHHHHHHHHTT-EEEESECEEE.EEEEETCEEEEE.....EE CS
         DAO  97 ealdkllallleaglda.elldaeevrelepa..lpgll.galfypdtgqvdpakltaalaraaealGveilegtevtg.leeedgkvwgve.....rt 185
                 e l++++a +  ag+   elld++e+r+++p   l+g++ g+l++ ++g++dp+ l+++++r+a alGv+ +eg++v + +++  ++v  v      r 
  KOO24321.1  95 ETLRRNYATQVGAGAHWiELLDPDELRARFPWlrLDGVVaGSLGTANEGWFDPWGLLRGMRRKATALGVTYVEGRPVGAtVDAATKRVLSVDvastsR- 192
                 99******98446765579*************6655777588********************************999885555546666665643321. PP

                 CTEEEE...........EEEEEEE--G CS
         DAO 186 tpgend...........aadavVnaaG 201
                      +            a+av naaG
  KOO24321.1 193 --S--SggdgggvlqfrPARAVANAAG 215
                 ..1..1333566777887799****99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (239 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       285  (0.015896); expected 358.6 (0.02)
Passed bias filter:                      219  (0.0122148); expected 358.6 (0.02)
Passed Vit filter:                        11  (0.000613531); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.25s 00:00:00.65 Elapsed: 00:00:00.41
# Mc/sec: 1761.32
//
Query:       KOO24322.1  [L=657]
Description: 3-ketoacyl- synthase 11-like protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   8.4e-107  356.8   0.3   2.1e-106  355.4   0.3    1.6  1  FAE1_CUT1_RppA   FAE1/Type III polyketide synthase-like prote
    3.6e-11   43.3   0.0    6.5e-11   42.4   0.0    1.3  1  Chal_sti_synt_C  Chalcone and stilbene synthases, C-terminal 
    1.5e-08   34.7   0.0     0.0003   20.9   0.0    2.5  2  ACP_syn_III_C    3-Oxoacyl-[acyl-carrier-protein (ACP)] synth
    0.00017   21.4   0.1    0.00045   20.0   0.1    1.6  1  ACP_syn_III      3-Oxoacyl-[acyl-carrier-protein (ACP)] synth


Domain annotation for each model (and alignments):
>> FAE1_CUT1_RppA  FAE1/Type III polyketide synthase-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  355.4   0.3  4.8e-110  2.1e-106      25     289 ..     160     436 ..     119     437 .. 0.88

  Alignments for each domain:
  == domain 1  score: 355.4 bits;  conditional E-value: 4.8e-110
  FAE1_CUT1_RppA  25 vstetfleiikrvkkldeesldflrkilersglgeetyvPravle..........lpekktlaeareEaeevlfgavdellaktkvspkdidilv 109
                     + +++++ ++  +  ++e+ ++f++kil+ s +ge + +P ++++           +e+ ++  areEae ++f av+ +l  tk ++k +dilv
      KOO24322.1 160 LAVSKAACHADGTPCFTEQAMAFQEKILRTSCIGECSIFPPSIFSdaaianprmqERERLRMGGAREEAELMMFRAVERVLTATKTDAKAVDILV 254
                     44556666777888999999********************998752222111110233357788******************************* PP

  FAE1_CUT1_RppA 110 vncslfsptPslsamvvnryklredvksynLsgmGCsAglisidlaknllq..vhkntlalvvstEnitlnwYvGnersmllanclFRvGgaavl 202
                     vncslf+ptPslsam+vnr+++r+dv+synL+gmGCsA++i++dla +ll    h+n  alvvstEnit+nwY+Gn++smll+nclFR+G+aa+l
      KOO24322.1 255 VNCSLFCPTPSLSAMIVNRFQMRSDVQSYNLGGMGCSASIIAVDLAAKLLAspEHRNCRALVVSTENITQNWYRGNDKSMLLSNCLFRCGAAAML 349
                     **************************************************944588*************************************** PP

  FAE1_CUT1_RppA 203 lsnksadrrrakyeLvhvvRthkgaddkayecvvqeeDeegkvGvslskdlvkvagealkknlttlgplvLPlsEqlrflltlvkkk 289
                     lsn++adrrra+++L h+vRth g +d++y++v+qeeD eg  Gv+lsk+++++ag+alk+n+t+lgpl+LP+sEqlrf+++l+++k
      KOO24322.1 350 LSNRRADRRRARFKLLHTVRTHLGQSDECYRAVYQEEDAEGVRGVRLSKQIMQIAGDALKRNITSLGPLILPVSEQLRFFFNLLARK 436
                     ************************************************************************************998 PP

>> Chal_sti_synt_C  Chalcone and stilbene synthases, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.4   0.0   1.5e-14   6.5e-11      61     115 ..     552     607 ..     531     622 .. 0.87

  Alignments for each domain:
  == domain 1  score: 42.4 bits;  conditional E-value: 1.5e-14
  Chal_sti_synt_C  61 lfwi.vhPGGpaildrleaklklekekleasrkvlseyGnvssatvlyvldelrdk 115
                      + w+ vh GG a++d++e++l+l ++ leasr  l  yGnvssa++ y l+ + + 
       KOO24322.1 552 VEWVcVHTGGRAVIDAIENNLNLPPHVLEASRLSLYRYGNVSSASIWYELELIAEY 607
                      557549********************************************998775 PP

>> ACP_syn_III_C  3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.9   0.0   6.7e-08    0.0003      10      61 ..     551     605 ..     549     611 .. 0.88
   2 !   11.1   0.0   7.7e-05      0.35      64      89 ..     627     652 ..     624     653 .. 0.92

  Alignments for each domain:
  == domain 1  score: 20.9 bits;  conditional E-value: 6.7e-08
                    G-SEEEE-SSSHHHHHHHHHHHT--GG...GB--THHHH-B-GGGHHHHHHHHHH CS
  ACP_syn_III_C  10 didalvphqanlriidavakklglpee...kvvvnldeyGntsaasiplaLdeav 61 
                     +++++ h   + +ida+ ++l+lp++       +l +yGn+s+asi + L+   
     KOO24322.1 551 AVEWVCVHTGGRAVIDAIENNLNLPPHvleASRLSLYRYGNVSSASIWYELELIA 605
                    689***********************9876778899***********99887665 PP

  == domain 2  score: 11.1 bits;  conditional E-value: 7.7e-05
                    TSS-TT-EEEEEEEETTTEEEEEEEE CS
  ACP_syn_III_C  64 gklkpgdlvllvgfGaGltwgaallr 89 
                    ++l++gd++  ++fG G+ + +a+++
     KOO24322.1 627 RRLRKGDRIWQIAFGSGFKCNSAVWQ 652
                    699********************986 PP

>> ACP_syn_III  3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.0   0.1     1e-07   0.00045       6      67 ..     289     356 ..     287     368 .. 0.77

  Alignments for each domain:
  == domain 1  score: 20.0 bits;  conditional E-value: 1e-07
                  GGGHHHHHHHHHHHHHHTTS-S..EEEEEEEEEGGGCS-TT...THHHHT...TB-EEEEEEEEEEE.SSS CS
  ACP_syn_III   6 aCsgfvyalsvAdaliesgaak..rvLvigaetlskilDwk...drstav...lfGDGAgAvvleas.eee 67 
                  +Cs+ ++a+++A++l++s +++  r+Lv+++e++++  +w    d+s  +   lf  GA+A++l++    +
   KOO24322.1 289 GCSASIIAVDLAAKLLASPEHRncRALVVSTENITQ--NWYrgnDKSMLLsncLFRCGAAAMLLSNRrA-D 356
                  7*****************97773369*********9..7753325544446669999********9842.3 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (657 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       766  (0.0427241); expected 358.6 (0.02)
Passed bias filter:                      587  (0.0327403); expected 358.6 (0.02)
Passed Vit filter:                        50  (0.00278878); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.66u 0.29s 00:00:00.95 Elapsed: 00:00:00.44
# Mc/sec: 4444.91
//
Query:       KOO24323.1  [L=118]
Description: hypothetical protein Ctob_003868 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (118 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       377  (0.0210274); expected 358.6 (0.02)
Passed bias filter:                      161  (0.00897987); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.25s 00:00:00.58 Elapsed: 00:00:00.38
# Mc/sec: 923.72
//
Query:       KOO24324.1  [L=124]
Description: histone h2a [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.3e-19   68.3   0.3    6.8e-19   67.3   0.3    1.6  1  Histone_H2A_C  C-terminus of histone H2A
    9.5e-16   58.4   0.0    1.2e-15   58.0   0.0    1.1  1  Histone        Core histone H2A/H2B/H3/H4
    5.1e-06   26.7   0.0    7.1e-06   26.2   0.0    1.2  1  CBFD_NFYB_HMF  Histone-like transcription factor (CBF/NF-Y) a


Domain annotation for each model (and alignments):
>> Histone_H2A_C  C-terminus of histone H2A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.3   0.3   1.1e-22   6.8e-19       1      34 [.      90     123 ..      90     124 .] 0.98

  Alignments for each domain:
  == domain 1  score: 67.3 bits;  conditional E-value: 1.1e-22
  Histone_H2A_C   1 EELnkLLggVTIAqGGVLPnIhkvLLpkktkkkk 34 
                    EELnk+L+gVT A GGVLPnIh+vLLpkk+kk++
     KOO24324.1  90 EELNKFLSGVTVAAGGVLPNIHSVLLPKKSKKAS 123
                    9*******************************97 PP

>> Histone  Core histone H2A/H2B/H3/H4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.0   0.0     2e-19   1.2e-15      51     129 ..      10      87 ..       6      89 .. 0.94

  Alignments for each domain:
  == domain 1  score: 58.0 bits;  conditional E-value: 2e-19
                 HHHHHHXXSXXSXHHHHHHHHHHHH.TTSSSXEEXHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTXSEEXHHHHHHHHH CS
     Histone  51 irkyqkstdlliqklpfaRvvreivksekedlrisaeavlalqealEallvelfeeAnllakhaKRvTitpkDiqlArr 129
                 ++k  +++++ + ++p+ Rv+r  +   k   ri a a+++l+++lE++ +e++e+A+++a+++K+++i p++i lA+r
  KOO24324.1  10 KKKATSRSAKAGLQFPVGRVHRHMKL-GKYASRIGAGAPVYLAAVLEYMAAEVLELAGNAARDNKKSRIIPRHITLAVR 87 
                 6788899999999*********9986.99*************************************************9 PP

>> CBFD_NFYB_HMF  Histone-like transcription factor (CBF/NF-Y) and archaeal histone
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.2   0.0   1.2e-09   7.1e-06       2      65 .]      23      86 ..      22      86 .. 0.98

  Alignments for each domain:
  == domain 1  score: 26.2 bits;  conditional E-value: 1.2e-09
                   XXXHHHHHHHHHCCTTXS-B-HHHHHHHHHHHHHHHHHHHHHHHHHHCCTTSSCE-HHHHHHHH CS
  CBFD_NFYB_HMF  2 eLPiarvkkImksdpdarkiakdAkeliaecveefieelaseAaeickkekrKtikaehiklAv 65
                   ++P+ rv + mk  + a +i   A++++a ++e ++ e+++ A   + ++k+  i + hi lAv
     KOO24324.1 23 QFPVGRVHRHMKLGKYASRIGAGAPVYLAAVLEYMAAEVLELAGNAARDNKKSRIIPRHITLAV 86
                   69************************************************************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (124 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       378  (0.0210832); expected 358.6 (0.02)
Passed bias filter:                      331  (0.0184617); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.35u 0.20s 00:00:00.55 Elapsed: 00:00:00.36
# Mc/sec: 1043.74
//
Query:       KOO24325.1  [L=757]
Description: cap-gly domain-containing linker protein 3 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    7.7e-24   83.5   0.1    1.3e-23   82.8   0.1    1.4  1  CAP_GLY        CAP-Gly domain
    8.5e-12   43.7   2.8    2.4e-05   23.5   1.4    2.6  2  EF-hand_1      EF hand
    1.1e-08   35.3   0.3    2.4e-08   34.3   0.3    1.6  1  EF-hand_7      EF-hand domain pair
    2.2e-06   26.9   1.1     0.0074   15.7   0.0    2.5  2  EF-hand_5      EF hand
    6.7e-06   25.6   0.3     0.0064   16.3   0.0    2.6  2  EF-hand_6      EF-hand domain
    1.6e-05   24.6   1.9    1.6e-05   24.6   1.9    2.4  3  EF-hand_8      EF-hand domain pair
    0.00075   19.4   0.1     0.0021   18.0   0.1    1.8  1  EF-hand_4      Cytoskeletal-regulatory complex EF hand
     0.0015   18.8   0.0     0.0045   17.3   0.0    1.8  1  SPARC_Ca_bdg   Secreted protein acidic and rich in cysteine C
  ------ inclusion threshold ------
      0.022   15.1   0.1      0.052   13.9   0.1    1.7  1  EF-hand_9      EF-hand domain
       0.19   12.0   1.4       0.42   10.8   1.4    1.6  1  Dockerin_1     Dockerin type I domain


Domain annotation for each model (and alignments):
>> CAP_GLY  CAP-Gly domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   82.8   0.1   7.1e-27   1.3e-23       1      65 []     102     166 ..     102     166 .. 0.97

  Alignments for each domain:
  == domain 1  score: 82.8 bits;  conditional E-value: 7.1e-27
     CAP_GLY   1 vgdrvklkegrrGvvryvGpvpfakgewvGveldepnGkndGsvkgkrYFeckpnrGvFvrpekv 65 
                 vgdrv ++ g +G vr++G+++f++g+wvGv l ep+Gk+dG+v+g+rYFec+p +G+F+r++k+
  KOO24325.1 102 VGDRVLTELGDEGYVRFIGETSFNPGVWVGVALLEPKGKHDGTVEGVRYFECPPDHGLFARAQKL 166
                 89***8788999**************************************************985 PP

>> EF-hand_1  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.1   0.0   3.6e-07   0.00065       5      28 ..     468     491 ..     466     492 .. 0.93
   2 !   23.5   1.4   1.4e-08   2.4e-05       2      27 ..     501     526 ..     500     528 .. 0.94

  Alignments for each domain:
  == domain 1  score: 19.1 bits;  conditional E-value: 3.6e-07
                 HHHHHTTTSSSEEEHHHHHHHHHH CS
   EF-hand_1   5 iFrefDkDgdGkIdfeEfkellkk 28 
                 +F+++D+D++G+I+ +E ke++++
  KOO24325.1 468 VFAKIDVDKSGQINADEIKEYIRS 491
                 79******************9986 PP

  == domain 2  score: 23.5 bits;  conditional E-value: 1.4e-08
                 HHHHHHHHTTTSSSEEEHHHHHHHHH CS
   EF-hand_1   2 lkeiFrefDkDgdGkIdfeEfkellk 27 
                 ++e+++ +D D+dG ++f Ef+ +++
  KOO24325.1 501 IDEMMMAADIDKDGEVNFGEFMVAMA 526
                 89**********************97 PP

>> EF-hand_7  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.3   0.3   1.3e-11   2.4e-08       7      70 ..     468     525 ..     465     526 .. 0.93

  Alignments for each domain:
  == domain 1  score: 34.3 bits;  conditional E-value: 1.3e-11
   EF-hand_7   7 aFkelDtdgdgyldkeellrllrkifqgagegsklsdeelellfkefDtdkdGvisfdEFlkly 70 
                 +F ++D+d++g ++ +e+++++r      ++ ++++d+ +++++   D dkdG+++f EF+ ++
  KOO24325.1 468 VFAKIDVDKSGQINADEIKEYIR------STYENVDDKTIDEMMMAADIDKDGEVNFGEFMVAM 525
                 69*********************......7777779************************9988 PP

>> EF-hand_5  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.0   4.1e-06    0.0074       4      23 ..     468     487 ..     466     489 .. 0.91
   2 !    9.4   0.2   0.00041      0.74       2      22 ..     502     522 ..     501     525 .. 0.86

  Alignments for each domain:
  == domain 1  score: 15.7 bits;  conditional E-value: 4.1e-06
                 HHHHH-SS-SSCE-HHHHHH CS
   EF-hand_5   4 tFqaiDlNgDGkIskeELkt 23 
                 +F +iD++++G+I+++E k+
  KOO24325.1 468 VFAKIDVDKSGQINADEIKE 487
                 7****************875 PP

  == domain 2  score: 9.4 bits;  conditional E-value: 0.00041
                 HHHHHHH-SS-SSCE-HHHHH CS
   EF-hand_5   2 kdtFqaiDlNgDGkIskeELk 22 
                 +++  a+D ++DG +++ E++
  KOO24325.1 502 DEMMMAADIDKDGEVNFGEFM 522
                 567889*************96 PP

>> EF-hand_6  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.0   3.6e-06    0.0064       5      27 ..     468     490 ..     467     495 .. 0.93
   2 !    6.5   0.1    0.0051       9.2       7      27 ..     506     526 ..     500     531 .. 0.83

  Alignments for each domain:
  == domain 1  score: 16.3 bits;  conditional E-value: 3.6e-06
   EF-hand_6   5 aFklfDkdgdGkidaeElrkalr 27 
                 +F ++D+d++G+i+a+E++  +r
  KOO24325.1 468 VFAKIDVDKSGQINADEIKEYIR 490
                 7******************9998 PP

  == domain 2  score: 6.5 bits;  conditional E-value: 0.0051
   EF-hand_6   7 klfDkdgdGkidaeElrkalr 27 
                 ++ D d+dG++++ E++ a+ 
  KOO24325.1 506 MAADIDKDGEVNFGEFMVAMA 526
                 67799***********98875 PP

>> EF-hand_8  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.6   0.0     0.033        60      31      51 ..     468     488 ..     466     492 .. 0.87
   2 !   24.6   1.9   8.9e-09   1.6e-05       2      54 ..     477     527 ..     476     528 .. 0.89
   3 ?   -3.6   0.1         6   1.1e+04      46      53 ..     552     559 ..     551     560 .. 0.79

  Alignments for each domain:
  == domain 1  score: 3.6 bits;  conditional E-value: 0.033
   EF-hand_8  31 lfrefDtdgdGkisfeEFcvl 51 
                 +f ++D d++G i+ +E  ++
  KOO24325.1 468 VFAKIDVDKSGQINADEIKEY 488
                 6889************98765 PP

  == domain 2  score: 24.6 bits;  conditional E-value: 8.9e-09
   EF-hand_8   2 kgkItreelrrilrilglkkglseeevdilfrefDtdgdGkisfeEFcvller 54 
                 +g+I  +e ++ +r+  ++  + ++ +d++++++D+d+dG ++f EF+v +++
  KOO24325.1 477 SGQINADEIKEYIRS-TYEN-VDDKTIDEMMMAADIDKDGEVNFGEFMVAMAE 527
                 789999999998866.5664.*****************************986 PP

  == domain 3  score: -3.6 bits;  conditional E-value: 6
   EF-hand_8  46 eEFcvlle 53 
                  EF+v ++
  KOO24325.1 552 AEFMVAMA 559
                 79999997 PP

>> EF-hand_4  Cytoskeletal-regulatory complex EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.0   0.1   1.2e-06    0.0021      24      70 ..     478     526 ..     467     558 .. 0.72

  Alignments for each domain:
  == domain 1  score: 18.0 bits;  conditional E-value: 1.2e-06
   EF-hand_4  24 nkltgdkvapvlkns..kleedklekiwdladidedgkldfeefciamr 70 
                  +++ d++   ++++  +++++ ++++   adid+dg+++f ef++am 
  KOO24325.1 478 GQINADEIKEYIRSTyeNVDDKTIDEMMMAADIDKDGEVNFGEFMVAMA 526
                 5666777777666642267889999***********************6 PP

>> SPARC_Ca_bdg  Secreted protein acidic and rich in cysteine Ca binding region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   0.0   2.5e-06    0.0045       9     111 ..     412     522 ..     408     524 .. 0.76

  Alignments for each domain:
  == domain 1  score: 17.3 bits;  conditional E-value: 2.5e-06
  SPARC_Ca_bdg   9 laelpeRlrdWlknlleelkereeek......ehleelekkeeeknlkeckepvawkFsklDtnsdkvlsksELap.lraplvkl.ehCikpflesc 97 
                   l++ ++Rl  Wl +  +   e+++e       +  e+++ ++  ++ k    p a  F k+D+++ + ++  E+++ +r++  ++ ++ i+++++++
    KOO24325.1 412 LRQSAARLEGWLVAEAALQPEDAREVarevieSIEEQEAMEAAAEQPKVAGAPTAVVFAKIDVDKSGQINADEIKEyIRSTYENVdDKTIDEMMMAA 508
                   789999*****9876655555444446777754444555566666777778899999*****************9835555554436799******* PP

  SPARC_Ca_bdg  98 DadkdkkislkEwc 111
                   D dkd++++  E++
    KOO24325.1 509 DIDKDGEVNFGEFM 522
                   ***********997 PP

>> EF-hand_9  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.1   2.9e-05     0.052       3      63 ..     468     526 ..     466     528 .. 0.92

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 2.9e-05
   EF-hand_9   3 vFevcDtqktGrVpvsrlidyLravtaqdpeeseLeelakelDPdgedasvdldtflrvmr 63 
                 vF   D++k G++   ++++y r + + +  +  ++e    +D d   ++v++  f + m 
  KOO24325.1 468 VFAKIDVDKSGQINADEIKEYIRSTYE-NVDDKTIDEMMMAADIDKD-GEVNFGEFMVAMA 526
                 68899******************9999.99*************8877.99******99996 PP

>> Dockerin_1  Dockerin type I domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   1.4   0.00023      0.42       3      46 ..     473     517 ..     471     523 .. 0.84

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00023
                 ETTSSSC-SHHHHHHHHHHCT....SSEBTTSCCCHGGGSTT-SSCES CS
  Dockerin_1   3 DVNgDgkVnalDalliinyln....qregqssssngkaaDvNgDGrvn 46 
                 DV+++g++na     i+ y+     + ++++ +++  aaD+++DG+vn
  KOO24325.1 473 DVDKSGQINAD---EIKEYIRstyeNVDDKTIDEMMMAADIDKDGEVN 517
                 9********75...6666666666878899999**************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (757 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      3355  (0.187127); expected 358.6 (0.02)
Passed bias filter:                      824  (0.0459591); expected 358.6 (0.02)
Passed Vit filter:                       364  (0.0203023); expected 17.9 (0.001)
Passed Fwd filter:                        96  (0.00535445); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 1.87u 0.40s 00:00:02.27 Elapsed: 00:00:00.55
# Mc/sec: 4177.17
//
Query:       KOO24326.1  [L=260]
Description: monoacylglycerol oacyltransferase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.3e-40  139.1   0.0    1.6e-40  138.9   0.0    1.1  1  DAGAT            Diacylglycerol acyltransferase
     0.0078   15.8   0.0      0.014   15.0   0.0    1.4  1  Acyltransferase  Acyltransferase


Domain annotation for each model (and alignments):
>> DAGAT  Diacylglycerol acyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  138.9   0.0   1.8e-44   1.6e-40      45     290 ..      21     254 ..       7     260 .] 0.86

  Alignments for each domain:
  == domain 1  score: 138.9 bits;  conditional E-value: 1.8e-44
       DAGAT  45 faeYfPvkLvktael...etdrnYliGyhPhgilsvgafvalatdatgvkekfpgirfnlatLa..gqfrtpfrreillllGlievsresieyvLdkee 138
                 f+ +  ++L+ +  l   ++++  +iG+hPhgi s   +  l  d+  +++ +pg  +   tLa    f++p+ re+ +++  i++s+   e  L k +
  KOO24326.1  21 FRRFLSLRLHIDDALrarPPEQPVIIGVHPHGIASD--YRILM-DG-MLYSALPGR-PV-LTLAasVLFHLPLVRELCVWTRCIDASKPVAERALRKRN 113
                 67788888888777622257999*********9874..44554.55.577888994.43.44542478****************************999 PP

       DAGAT 139 kGravvlvvGGaeealeahpgketltLkkrkGfvkialktGadLvPvysfGendvykqvenpkgsklrkvqeklkkvlglsppilyGrglfnsltlGll 237
                 +   ++++vGG +e + ++ g e ++L++r Gfvk+al +G+ LvPvy+fG  d y  ++n     lr  +e l+k lg+++p++ G        +G+l
  KOO24326.1 114 S---LMIIVGGEAEQIGTRYGIEEVVLQNRYGFVKLALAHGCALVPVYCFGCVDCYWTWSN----VLRGPREALRKRLGVCLPLYAG-------SFGVL 198
                 9...9***************************************************99987....688899****************.......489** PP

       DAGAT 238 PfrkpittvvGkPievtkte...ePtkeeidelhakYveaLaeLfeehkekfgvsk 290
                 P+r p+++v G+P+e t  +   +Pt+ee++  ha+Y+ aL+ Lf++hk+ fg ++
  KOO24326.1 199 PLRVPLDMVFGAPLELTPPVtpgKPTEEEVAMAHAQYIAALVALFNQHKSAFGYDE 254
                 ***************9965422389***************************9544 PP

>> Acyltransferase  Acyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.0   1.6e-06     0.014      13     134 ..      41     159 ..      26     160 .. 0.78

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 1.6e-06
  Acyltransferase  13 kgpail.vaNHqsylDvlllw.lllyksn.gprnvviiakkellsipllgflmrllgfifidRksnaraagsleniselleegklvviFPEG.. 101
                      ++p+i+ v  H +  D+ +l+  +ly    g r+v ++a+  l+ +pl+++l+  +++i +++            ++++l++ + ++i   G  
       KOO24326.1  41 EQPVIIgVHPHGIASDYRILMdGMLYSALpG-RPVLTLAASVLFHLPLVRELCVWTRCIDASK----------PVAERALRKRNSLMIIVGGea 123
                      4444443777778899966654888888855.99999999999999*****************..........566668899888999999966 PP

  Acyltransferase 102 ....trsregel.lpfkkGlvrlaakakkgvpivPvai 134
                          tr   +e+ l+ + G+v+la+ +  g+ +vPv++
       KOO24326.1 124 eqigTRYGIEEVvLQNRYGFVKLALAH--GCALVPVYC 159
                      6666666667778**********9999..******975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (260 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       404  (0.0225333); expected 358.6 (0.02)
Passed bias filter:                      352  (0.019633); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.43u 0.23s 00:00:00.66 Elapsed: 00:00:00.40
# Mc/sec: 1959.26
//
Query:       KOO24327.1  [L=425]
Description: ptype ATPase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.11   12.7  11.6       0.62   10.3   0.1    4.3  4  DUF2475   Protein of unknown function (DUF2475)


Domain annotation for each model (and alignments):
>> DUF2475  Protein of unknown function (DUF2475)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.2   0.2     0.025   4.5e+02       5      13 ..      37      45 ..      36      48 .. 0.90
   2 ?    0.1   0.3     0.053   9.4e+02      13      52 ..     219     262 ..     218     267 .. 0.62
   3 ?    5.3   0.5    0.0013        23       4      15 ..     266     277 ..     263     280 .. 0.85
   4 ?   10.3   0.1   3.5e-05      0.62       3      17 ..     309     323 ..     308     327 .. 0.86

  Alignments for each domain:
  == domain 1  score: 1.2 bits;  conditional E-value: 0.025
     DUF2475  5 mPGYrGyvP 13
                +PGY+G vP
  KOO24327.1 37 VPGYTGMVP 45
                7*******9 PP

  == domain 2  score: 0.1 bits;  conditional E-value: 0.053
     DUF2475  13 PqvkysfGdtYGnt....taklfqDyRsaaleksttryskggef 52 
                 P++k+s+ + YG+     ++kl  D  + ++  st++y +g + 
  KOO24327.1 219 PELKTSYREAYGAYgvdpRSKLPADPTQINFTASTAEYFQGTSK 262
                 88888888888863222256666666666666666666666655 PP

  == domain 3  score: 5.3 bits;  conditional E-value: 0.0013
     DUF2475   4 lmPGYrGyvPqv 15 
                 + PGY+G+vP++
  KOO24327.1 266 HPPGYSGFVPET 277
                 56********85 PP

  == domain 4  score: 10.3 bits;  conditional E-value: 3.5e-05
     DUF2475   3 klmPGYrGyvPqvky 17 
                 + +PGY+Gy+Pq++ 
  KOO24327.1 309 HQLPGYAGYRPQTAI 323
                 569*********875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (425 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       254  (0.014167); expected 358.6 (0.02)
Passed bias filter:                      229  (0.0127726); expected 358.6 (0.02)
Passed Vit filter:                        11  (0.000613531); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.24s 00:00:00.68 Elapsed: 00:00:00.39
# Mc/sec: 3233.54
//
Query:       KOO24328.1  [L=205]
Description: hypothetical protein Ctob_003862 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (205 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       604  (0.0336884); expected 358.6 (0.02)
Passed bias filter:                      479  (0.0267165); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.40u 0.24s 00:00:00.64 Elapsed: 00:00:00.38
# Mc/sec: 1605.42
//
Query:       KOO24329.1  [L=120]
Description: histone h2b [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.4e-20   72.7   0.3    4.8e-20   72.3   0.3    1.1  1  Histone        Core histone H2A/H2B/H3/H4
    0.00061   20.0   0.0     0.0014   18.9   0.0    1.6  1  CBFD_NFYB_HMF  Histone-like transcription factor (CBF/NF-Y) a
     0.0083   16.6   0.0      0.014   15.9   0.0    1.3  1  TFIID_20kDa    Transcription initiation factor TFIID subunit 
     0.0089   16.1   0.9      0.011   15.8   0.9    1.2  1  YscO-like      YscO-like protein


Domain annotation for each model (and alignments):
>> Histone  Core histone H2A/H2B/H3/H4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   72.3   0.3   1.1e-23   4.8e-20      37     130 ..       6      95 ..       2      96 .. 0.86

  Alignments for each domain:
  == domain 1  score: 72.3 bits;  conditional E-value: 1.1e-23
                 -TTT-XTTHHHHHHHHHHHHXXSXXSXHHHHHHHHHHHH.TTSSSXEEXHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTXSEEXHHHHHHHHHH CS
     Histone  37 kkrryrpgtvalkeirkyqkstdlliqklpfaRvvreivksekedlrisaeavlalqealEallvelfeeAnllakhaKRvTitpkDiqlArrl 130
                 k++  +  ++ +   +k+ k++++++++ ++++v++++++    d +is++a+ ++++++++ +++++ eA++l++++K+ T+ +++iq+A+rl
  KOO24329.1   6 KTPAKKSEKKPKATGEKKKKKKRTESYSSYIYKVLKQVHP----DTGISSKAMSIMNSFINDAFERIAVEAGKLVRYNKKGTLSSREIQTAVRL 95 
                 44444444444555667777778889999***********....*************************************************7 PP

>> CBFD_NFYB_HMF  Histone-like transcription factor (CBF/NF-Y) and archaeal histone
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.9   0.0   3.1e-07    0.0014       8      65 .]      36      93 ..      34      93 .. 0.96

  Alignments for each domain:
  == domain 1  score: 18.9 bits;  conditional E-value: 3.1e-07
                   HHHHHHCC.TTXS-B-HHHHHHHHHHHHHHHHHHHHHHHHHHCCTTSSCE-HHHHHHHH CS
  CBFD_NFYB_HMF  8 vkkImksd.pdarkiakdAkeliaecveefieelaseAaeickkekrKtikaehiklAv 65
                   + k++k+  pd++ i++ A  +++ ++    e++a eA +++  +k+ t++   i+ Av
     KOO24329.1 36 IYKVLKQVhPDTG-ISSKAMSIMNSFINDAFERIAVEAGKLVRYNKKGTLSSREIQTAV 93
                   779*****88888.******************************************998 PP

>> TFIID_20kDa  Transcription initiation factor TFIID subunit A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.0   3.2e-06     0.014       7      60 ..      38      91 ..      34      96 .. 0.93

  Alignments for each domain:
  == domain 1  score: 15.9 bits;  conditional E-value: 3.2e-06
                 HHHHCC-SS----HHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-SEE-HHHHHH CS
  TFIID_20kDa  7 dLvqqvdsetkldedvedlLleiaddFvesvtkfacklakhRksdklevrDiql 60
                   ++qv ++t +  +   ++   ++d  e +   a kl+++ k  +l++r iq 
   KOO24329.1 38 KVLKQVHPDTGISSKAMSIMNSFINDAFERIAVEAGKLVRYNKKGTLSSREIQT 91
                 6799************************************************95 PP

>> YscO-like  YscO-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.9   2.4e-06     0.011      33     111 ..      12      93 ..       4     115 .. 0.77

  Alignments for each domain:
  == domain 1  score: 15.8 bits;  conditional E-value: 2.4e-06
                 HHHHHHHHHH.HHHHHHHHHHHHHHHH.HHHHH.HH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
   YscO-like  33 kEkeklrkle.eerdkvkkhkkaKvaq.lreel.dkGttsdkikkmkryikvvkeelkqeekkvekQkekVkvAerkvEqar 111
                  Ek+  +  e +++ k+++ +   + + l+++  d G +s+++ +m+++i+   e++++e+ k+ + ++k +  +r++  a 
  KOO24329.1  12 SEKKPKATGEkKKKKKRTESYSSYIYKvLKQVHpDTGISSKAMSIMNSFINDAFERIAVEAGKLVRYNKKGTLSSREIQTAV 93 
                 444444433303344555666777777677754489******************************9999999999998875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (120 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1406  (0.0784204); expected 358.6 (0.02)
Passed bias filter:                      655  (0.036533); expected 358.6 (0.02)
Passed Vit filter:                        59  (0.00329076); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.42u 0.25s 00:00:00.67 Elapsed: 00:00:00.42
# Mc/sec: 868.00
//
Query:       KOO24330.1  [L=311]
Description: ring finger protein 115, partial [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    8.9e-09   35.6  10.0    1.4e-08   35.0  10.0    1.3  1  zf-RING_2     Ring finger domain
    4.1e-06   26.4   2.9    4.1e-06   26.4   2.9    1.9  2  zf-RING_11    RING-like zinc finger
    1.1e-05   25.6  11.1    4.3e-05   23.7  11.1    1.9  1  zf-rbx1       RING-H2 zinc finger domain
      2e-05   24.3   9.9      4e-05   23.4   9.9    1.5  1  zf-C3HC4_2    Zinc finger, C3HC4 type (RING finger)
    7.7e-05   22.7   0.9    0.00015   21.7   0.9    1.5  1  zf-ANAPC11    Anaphase-promoting complex subunit 11 RING-H2 f
    0.00026   20.9   3.4    0.00026   20.9   3.4    2.3  2  zf-RING_UBOX  RING-type zinc-finger
    0.00036   20.3   8.2    0.00066   19.5   8.2    1.5  1  zf-C3HC4      Zinc finger, C3HC4 type (RING finger)
     0.0037   17.2   6.9      0.006   16.5   6.9    1.4  1  zf-RING_5     zinc-RING finger domain
      0.008   16.3   7.8      0.084   13.1   7.8    2.2  1  FANCL_C       FANCL C-terminal domain
  ------ inclusion threshold ------
      0.076   12.9   8.8       0.15   11.9   8.8    1.5  1  zf-C3HC4_3    Zinc finger, C3HC4 type (RING finger)
       0.22   11.4   7.1       0.59   10.0   7.2    1.7  1  Prok-RING_4   Prokaryotic RING finger family 4
       0.58    9.8   5.2          1    9.0   5.2    1.4  1  Zn_ribbon_17  Zinc-ribbon, C4HC2 type
        2.2    8.5   6.6        4.4    7.5   6.6    1.5  1  RINGv         RING-variant domain


Domain annotation for each model (and alignments):
>> zf-RING_2  Ring finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.0  10.0   9.8e-12   1.4e-08       2      44 .]     120     166 ..     119     166 .. 0.81

  Alignments for each domain:
  == domain 1  score: 35.0 bits;  conditional E-value: 9.8e-12
   zf-RING_2   2 eCpICleel..ssadsvlllp.CgHvfhreClerwlrssst.CPlCr 44 
                 +C+ICl++l   +a  v +lp C+H fh+ Cl  wlr ++  CP+Cr
  KOO24330.1 120 TCAICLDDLncLEAAPVARLPrCSHAFHEACLLPWLRDCRGtCPICR 166
                 7*******96544455556645*************9887768****9 PP

>> zf-RING_11  RING-like zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.4   2.9   2.9e-09   4.1e-06       2      29 .]     121     151 ..     120     151 .. 0.79
   2 ?   -2.0   0.1       2.3   3.2e+03       2       6 ..     162     166 ..     162     171 .. 0.78

  Alignments for each domain:
  == domain 1  score: 26.4 bits;  conditional E-value: 2.9e-09
  zf-RING_11   2 CsICLeefkpgq..al.filpCsHtFHfkCI 29 
                 C+ICL+++   +   + +++ CsH+FH  C+
  KOO24330.1 121 CAICLDDLNCLEaaPVaRLPRCSHAFHEACL 151
                 *********655334436667*********5 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 2.3
  zf-RING_11   2 CsICL 6  
                 C IC 
  KOO24330.1 162 CPICR 166
                 99**5 PP

>> zf-rbx1  RING-H2 zinc finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.7  11.1   3.1e-08   4.3e-05      28      55 .]     138     166 ..     119     166 .. 0.71

  Alignments for each domain:
  == domain 1  score: 23.7 bits;  conditional E-value: 3.1e-08
     zf-rbx1  28 vlGeCgHaFHlhCiskWlkt.rkvCPlcr 55 
                  l +C+HaFH  C+  Wl+  r +CP+cr
  KOO24330.1 138 RLPRCSHAFHEACLLPWLRDcRGTCPICR 166
                 3579***************99*******8 PP

>> zf-C3HC4_2  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.4   9.9   2.9e-08     4e-05       2      40 .]     121     165 ..     120     165 .. 0.80

  Alignments for each domain:
  == domain 1  score: 23.4 bits;  conditional E-value: 2.9e-08
  zf-C3HC4_2   2 CpiCldmlk...dpsvvt...pCgHvfCqkCilrsLeekn.eCPlC 40 
                 C+iCld l+    +  v+    C H f++ C+l++L++    CP+C
  KOO24330.1 121 CAICLDDLNcleAA-PVArlpRCSHAFHEACLLPWLRDCRgTCPIC 165
                 *****988633122.2324669****************999***** PP

>> zf-ANAPC11  Anaphase-promoting complex subunit 11 RING-H2 finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.7   0.9   1.1e-07   0.00015      49      79 ..     139     167 ..     110     171 .. 0.84

  Alignments for each domain:
  == domain 1  score: 21.7 bits;  conditional E-value: 1.1e-07
                 EBTTS-EEEHHHHHHHHHHHSTSSB-TTTSS CS
  zf-ANAPC11  49 lGkckhnfhlhcilkwletetskglcpmcrq 79 
                 l +c+h+fh+ c+l wl     +g cp+cr 
  KOO24330.1 139 LPRCSHAFHEACLLPWLR--DCRGTCPICRT 167
                 568**************7..589******96 PP

>> zf-RING_UBOX  RING-type zinc-finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.9   3.4   1.9e-07   0.00026       1      26 [.     121     154 ..     121     161 .. 0.80
   2 ?    3.2   1.9     0.068        94       1      11 [.     162     172 ..     162     178 .. 0.83

  Alignments for each domain:
  == domain 1  score: 20.9 bits;  conditional E-value: 1.9e-07
  zf-RING_UBOX   1 CpIClelft....dPlv..l.pCGHtFCreCl..w 26 
                   C ICl++++     P v  l  C+H F++ Cl  w
    KOO24330.1 121 CAICLDDLNcleaAP-VarLpRCSHAFHEACLlpW 154
                   *************88.334635**********655 PP

  == domain 2  score: 3.2 bits;  conditional E-value: 0.068
  zf-RING_UBOX   1 CpIClelftdP 11 
                   CpIC+ ++ +P
    KOO24330.1 162 CPICRTPLAEP 172
                   ******99988 PP

>> zf-C3HC4  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.5   8.2   4.8e-07   0.00066       1      41 []     121     165 ..     121     165 .. 0.94

  Alignments for each domain:
  == domain 1  score: 19.5 bits;  conditional E-value: 4.8e-07
                 -TTT-S--SS-E......E-TTS--B-CHHHHHHHHCTSSB--TTT CS
    zf-C3HC4   1 CpiCleeakepn.....elleCkHsfCskCirkilksrkkvkCPlC 41 
                 C+iCl+ +         +l  C H+f+++C++ +l+ +   +CP+C
  KOO24330.1 121 CAICLDDLNCLEaapvaRLPRCSHAFHEACLLPWLR-DCRGTCPIC 165
                 *******99999999999******************.77778**** PP

>> zf-RING_5  zinc-RING finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   6.9   4.4e-06     0.006       2      44 .]     121     167 ..     120     167 .. 0.90

  Alignments for each domain:
  == domain 1  score: 16.5 bits;  conditional E-value: 4.4e-06
   zf-RING_5   2 CnkCfekl...skeekfyltsCgHifCekClkkll.ekeavCpiCrk 44 
                 C +C + l   +    + l +C+H f+e+Cl   l   + +CpiCr+
  KOO24330.1 121 CAICLDDLnclEAAPVARLPRCSHAFHEACLLPWLrDCRGTCPICRT 167
                 999**999876666669****************999999******95 PP

>> FANCL_C  FANCL C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.1   7.8   6.1e-05     0.084       3      65 ..     119     169 ..     117     173 .. 0.76

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 6.1e-05
                 -S-SSS--SS-TT-----B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEE CS
     FANCL_C   3 veCgiCyayrldsgevpdisCdnekCnkkfHsaCLkeWlrslkesrqsfdvlfGeCPyCkkki 65 
                   C iC+      ++ p  +   ++C++ fH+aCL  Wlr  +          G+CP C+ ++
  KOO24330.1 119 ATCAICLDDLNCLEAAP--VARLPRCSHAFHEACLLPWLRDCR----------GTCPICRTPL 169
                 57999987766555555..45679***************9876..........7777777766 PP

>> zf-C3HC4_3  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   8.8   0.00011      0.15       4      47 ..     120     169 ..     117     171 .. 0.76

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 0.00011
                 B-TTTSSSBS-EEETT......EEEEEE-HHHHHHHHH.TT-B-TTT--B- CS
  zf-C3HC4_3   4 eCviClerprnvvllp......CgHlvlCeeCaekllk.rkkkCpiCrrpi 47 
                 +C iCl+   +    p      C H  + e+C+  +l+  + +CpiCr+p 
  KOO24330.1 120 TCAICLDDLNCLEAAPvarlprCSHA-FHEACLLPWLRdCRGTCPICRTPL 169
                 7999999644433333333446****.*******9999899*******996 PP

>> Prok-RING_4  Prokaryotic RING finger family 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   7.2   0.00043      0.59       4      42 ..     130     171 ..     121     174 .. 0.82

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.00043
  Prok-RING_4   4 CgeqekkailepCgHlvCkeCfdsk..dls.sCPlCqrrisk 42 
                  C e+  +a+l  C H + ++C+  +  d   +CP+C++ +++
   KOO24330.1 130 CLEAAPVARLPRCSHAFHEACLLPWlrDCRgTCPICRTPLAE 171
                  777799999****************655559******98765 PP

>> Zn_ribbon_17  Zinc-ribbon, C4HC2 type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.0   5.2   0.00073         1       6      46 ..     120     163 ..     115     167 .. 0.66

  Alignments for each domain:
  == domain 1  score: 9.0 bits;  conditional E-value: 0.00073
  Zn_ribbon_17   6 sCayCelavkgr....vvlcgvCeHvlHasCarewfenddlaeCp 46 
                   +Ca+C   ++ +    v   ++C H  H++C+  w+     + Cp
    KOO24330.1 120 TCAICLDDLNCLeaapVARLPRCSHAFHEACLLPWLRDCR-GTCP 163
                   6777733332220011233479*************99877.8888 PP

>> RINGv  RING-variant domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.5   6.6    0.0032       4.4       1      48 []     121     165 ..     121     165 .. 0.82

  Alignments for each domain:
  == domain 1  score: 7.5 bits;  conditional E-value: 0.0032
                 ETTTTEE-SSSS..--B-SS--STCCCSB-HHHHHHHHHHTCT-SB-TTT CS
       RINGv   1 CriCleeeeese..plispCkCrGslklvHesClekWldekeantqCeiC 48 
                 C iCl++ +  e  p+ +  +C+     +He+Cl  Wl+      +C iC
  KOO24330.1 121 CAICLDDLNCLEaaPVARLPRCSH---AFHEACLLPWLRD--CRGTCPIC 165
                 888888766555558888889986...9***********9..77889999 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (311 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       822  (0.0458475); expected 358.6 (0.02)
Passed bias filter:                      468  (0.026103); expected 358.6 (0.02)
Passed Vit filter:                        58  (0.00323498); expected 17.9 (0.001)
Passed Fwd filter:                        13  (0.000725082); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 0.50u 0.26s 00:00:00.76 Elapsed: 00:00:00.44
# Mc/sec: 2104.12
//
Query:       KOO24331.1  [L=1464]
Description: flagellar associated protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.6e-18   66.7   0.5      0.003   17.7   0.0    8.2  9  ASH        Abnormal spindle-like microcephaly-assoc'd, ASPM-S
     0.0029   17.7   0.2       0.73   10.0   0.0    4.2  4  PapD-like  Flagellar-associated PapD-like
  ------ inclusion threshold ------
       0.02   14.9   0.0         13    5.9   0.0    4.9  7  DUF1573    Protein of unknown function (DUF1573)


Domain annotation for each model (and alignments):
>> ASH  Abnormal spindle-like microcephaly-assoc'd, ASPM-SPD-2-Hydin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.7   0.0       0.1   6.2e+02      10      36 ..     575     602 ..     570     658 .. 0.73
   2 !   10.6   0.0   8.2e-05      0.49      11      46 ..     680     715 ..     675     720 .. 0.86
   3 ?    1.7   0.0      0.05     3e+02      51      81 ..     742     772 ..     736     779 .. 0.82
   4 ?   -1.9   0.0      0.64   3.8e+03      28      74 ..     822     868 ..     820     871 .. 0.78
   5 !   13.5   0.0   1.1e-05     0.063      12      89 ..     925    1001 ..     920    1009 .. 0.88
   6 ?   -2.3   0.0      0.89   5.3e+03       6      27 ..    1031    1051 ..    1027    1055 .. 0.73
   7 !    7.2   0.0   0.00098       5.9       3      42 ..    1093    1132 ..    1091    1159 .. 0.78
   8 !   17.7   0.0     5e-07     0.003      14      77 ..    1187    1256 ..    1180    1268 .. 0.81
   9 ?    1.9   0.0     0.042   2.5e+02      49      78 ..    1382    1411 ..    1376    1421 .. 0.87

  Alignments for each domain:
  == domain 1  score: 0.7 bits;  conditional E-value: 0.1
                 --.EEEEE-----EEEEEEE-EEESS-S CS
         ASH  10 rk.pfvsFgdvkvGssaerlLtveNpse 36 
                 +k + + F d  vG++ e + t++N s 
  KOO24331.1 575 CKpNVILFADFDVGKTYEIKFTLTNVSY 602
                 4437889***************999875 PP

  == domain 2  score: 10.6 bits;  conditional E-value: 8.2e-05
                 -EEEEE-----EEEEEEE-EEESS-SS--EEEEEEE CS
         ASH  11 kpfvsFgdvkvGssaerlLtveNpseepaevkvskv 46 
                 +p+++Fg v  G++++  Lt++N+++ +  +++s++
  KOO24331.1 680 TPTIDFGAVVMGETRRLPLTFVNGGALDCPLTISTL 715
                 69***********************99877777765 PP

  == domain 3  score: 1.7 bits;  conditional E-value: 0.05
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
         ASH  51 kgfsveetelevqpgesvtltvtwtPteega 81 
                 + f    ++++v++ +++t+++t++P + g 
  KOO24331.1 742 FTFDAGVEQTVVKGYDTTTIMLTFAPRQPGD 772
                 56777778899***************99875 PP

  == domain 4  score: -1.9 bits;  conditional E-value: 0.64
                 E-EEESS-SS--EEEEEEEE--XXXXXXXXXXXXXXXXXXXXXXXXX CS
         ASH  28 lLtveNpseepaevkvskvpaaekgfsveetelevqpgesvtltvtw 74 
                 +++++N s+++++v+v    + +  +   +++  vq+ +++ +++++
  KOO24331.1 822 SVVLHNRSKTALKVNVLVPRPLKGYLEFVPSTGFVQARSPFAVSLKL 868
                 68999999999999986655566667788888999999998888765 PP

  == domain 5  score: 13.5 bits;  conditional E-value: 1.1e-05
                  EEEEE-----EEEEEEE-EEESS-SS--EEEEEEEE--XXXXXXXXXX..XXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
         ASH   12 pfvsFgdvkvGssaerlLtveNpseepaevkvskvpaaekgfsveete..levqpgesvtltvtwtPteegavrevLqfl 89  
                   ++ Fg+ +++ s+  +L ++N s+ p++    ++p   k++ v++     ++ pge+++ +v ++Pt+e++ + +L+  
  KOO24331.1  925 STLHFGSCPLNASRILELSIRNVSALPQRFGFLPLP---KELDVQPGDaiGTILPGETLVRRVLFSPTAEITHKITLTCR 1001
                  5899***********************999888888...67777776667*********************999999865 PP

  == domain 6  score: -2.3 bits;  conditional E-value: 0.89
                  -TTB--EEEEE-----EEEEEE CS
         ASH    6 apfsrkpfvsFgdvkvGssaer 27  
                   p + +   sFgdv++++s + 
  KOO24331.1 1031 PP-TVEGDTSFGDVTLTNSSKH 1051
                  55.56667799***99999875 PP

  == domain 7  score: 7.2 bits;  conditional E-value: 0.00098
                  EEE-TTB--EEEEE-----EEEEEEE-EEESS-SS--EEE CS
         ASH    3 lllapfsrkpfvsFgdvkvGssaerlLtveNpseepaevk 42  
                  +l +++  +  v Fg+v+vG+s+  ++ +    + +++++
  KOO24331.1 1093 VLASSGGVTSEVAFGSVPVGQSRMVSIAIISREDVALQLT 1132
                  45566777899************99998877766665555 PP

  == domain 8  score: 17.7 bits;  conditional E-value: 5e-07
                  EEE-----EEEEEEE-EEESS-SS--EEEEEEEE--XXX......XXXXXXXXXXXXXXXXXXXXXXXXX CS
         ASH   14 vsFgdvkvGssaerlLtveNpseepaevkvskvpaaekg......fsveetelevqpgesvtltvtwtPt 77  
                  v  gdv vGs a++++t+eN s+ ++  +++ + a  ++      f v++te e+++g ++tltv ++P 
  KOO24331.1 1187 VHCGDVLVGSEASKTVTIENKSAFAVGYALKLLQAGHTNngaapvFDVSPTEAEIAGGATLTLTVRFAPD 1256
                  66699*****************9886555554443333223555599*********************95 PP

  == domain 9  score: 1.9 bits;  conditional E-value: 0.042
                  -XXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
         ASH   49 aekgfsveetelevqpgesvtltvtwtPte 78  
                  + +gf ve+++ +v+ ge++ +++++t +e
  KOO24331.1 1382 SRRGFGVEPLKGVVKEGEQQAIKLSFTLKE 1411
                  679**********************99665 PP

>> PapD-like  Flagellar-associated PapD-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.0   0.0   0.00012      0.73       2     101 ..     571     671 ..     570     672 .. 0.85
   2 ?    0.2   0.0      0.14   8.1e+02      10      36 ..     682     708 ..     675     719 .. 0.83
   3 ?    0.0   0.0      0.16   9.6e+02       9      38 ..     925     954 ..     921     963 .. 0.88
   4 ?   -0.6   0.0      0.25   1.5e+03      11      42 ..    1187    1218 ..    1183    1253 .. 0.80

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.00012
   PapD-like   2 PtlevsPakveFGkvlpgnryvltvellnvstvpcRyr.vrlpavvkkllsveY.krqFvaPGltvklkvelsgaqplGemdselsvvheggivevevr 98 
                 P +  +P+++ F     g+ y    +l+nvs++   +r   lp+ v ++++ +  +++ ++ G+t  l ++ s  +    ++se++  + +g ++v ++
  KOO24331.1 571 PAFICKPNVILFADFDVGKTYEIKFTLTNVSYTFNAFRpAALPDAVASFFELSHvPPGRMSAGVTADLFIKFS-PKINQDIESEITFNTATGPMTVPLK 668
                 788899*******************************95579********986537899********999998.5556677778887788888888777 PP

   PapD-like  99 aet 101
                 a t
  KOO24331.1 669 ATT 671
                 665 PP

  == domain 2  score: 0.2 bits;  conditional E-value: 0.14
   PapD-like  10 kveFGkvlpgnryvltvellnvstvpc 36 
                  ++FG v+ g+   l+++++n     c
  KOO24331.1 682 TIDFGAVVMGETRRLPLTFVNGGALDC 708
                 69******************9877766 PP

  == domain 3  score: 0.0 bits;  conditional E-value: 0.16
   PapD-like   9 akveFGkvlpgnryvltvellnvstvpcRy 38 
                 + ++FG    +   +l + + nvs  p R+
  KOO24331.1 925 STLHFGSCPLNASRILELSIRNVSALPQRF 954
                 6799***99999999**************9 PP

  == domain 4  score: -0.6 bits;  conditional E-value: 0.25
   PapD-like   11 veFGkvlpgnryvltvellnvstvpcRyrvrl 42  
                  v+ G vl g    +tv++ n s     y ++l
  KOO24331.1 1187 VHCGDVLVGSEASKTVTIENKSAFAVGYALKL 1218
                  78999999999999999999999888887765 PP

>> DUF1573  Protein of unknown function (DUF1573)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.1       0.5     3e+03      17      36 ..     361     380 ..     349     384 .. 0.78
   2 ?   -1.5   0.0      0.45   2.7e+03       8      29 ..     580     601 ..     575     604 .. 0.82
   3 ?   -2.9   0.0       1.2   7.4e+03      56      96 ..     632     669 ..     625     670 .. 0.66
   4 ?    0.8   0.0     0.083   4.9e+02       3      37 ..     678     714 ..     676     719 .. 0.79
   5 ?   -0.9   0.0      0.29   1.7e+03      53      89 ..     973    1007 ..     970    1015 .. 0.81
   6 ?    5.9   0.0    0.0022        13      48      96 ..    1235    1284 ..    1220    1286 .. 0.89
   7 ?   -3.5   0.0       1.8   1.1e+04      53      70 ..    1394    1411 ..    1391    1414 .. 0.80

  Alignments for each domain:
  == domain 1  score: -1.7 bits;  conditional E-value: 0.5
     DUF1573  17 ekvtatFeftNtgkaplvit 36 
                 ++ +++F f+Nt  +  vi+
  KOO24331.1 361 AQSNTKFMFENTKAKVSVID 380
                 556789******99988885 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 0.45
     DUF1573   8 idfgkieegekvtatFeftNtg 29 
                 i f +++ g++ +++F++tN +
  KOO24331.1 580 ILFADFDVGKTYEIKFTLTNVS 601
                 567788899999********86 PP

  == domain 3  score: -2.9 bits;  conditional E-value: 1.2
     DUF1573  56 pGesgkikvtfnakgrpgefnktvtvyantekepttlkikg 96 
                  G ++++ ++f++k  + +++   +++ nt ++p+t+ +k+
  KOO24331.1 632 AGVTADLFIKFSPKI-NQDIES--EITFNTATGPMTVPLKA 669
                 677777888888888.444444..45667777777776665 PP

  == domain 4  score: 0.8 bits;  conditional E-value: 0.083
     DUF1573   3 feettidfgkieegekvtatFeftNtg..kaplvitn 37 
                 +++ tidfg +  ge+ +   +f N g  + pl+i++
  KOO24331.1 678 LATPTIDFGAVVMGETRRLPLTFVNGGalDCPLTIST 714
                 56789********************993345666665 PP

  == domain 5  score: -0.9 bits;  conditional E-value: 0.29
     DUF1573   53 piapGesgkikvtfnakgrpgefnktvtvyante.kep 89  
                  +i pGe+ + +v f++++   e++ ++t+++ t+ +++
  KOO24331.1  973 TILPGETLVRRVLFSPTA---EITHKITLTCRTSlNRT 1007
                  589**************9...88999999999984444 PP

  == domain 6  score: 5.9 bits;  conditional E-value: 0.0022
     DUF1573   48 eypkepiapGesgkikvtfnakgrpgefnktvtv.yantekepttlkikg 96  
                  + ++++ia G + +++v+f ++ ++ +f + ++v   n+e++p  l ++g
  KOO24331.1 1235 SPTEAEIAGGATLTLTVRFAPDLASDSFWQLLEVsVPNQESSPHLLMLRG 1284
                  557889***************************95568889999999988 PP

  == domain 7  score: -3.5 bits;  conditional E-value: 1.8
     DUF1573   53 piapGesgkikvtfnakg 70  
                   ++ Ge+  ik++f+ k+
  KOO24331.1 1394 VVKEGEQQAIKLSFTLKE 1411
                  578999999999998765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1464 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1182  (0.0659267); expected 358.6 (0.02)
Passed bias filter:                      402  (0.0224218); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.94u 0.35s 00:00:01.29 Elapsed: 00:00:00.51
# Mc/sec: 8624.17
//
Query:       KOO24332.1  [L=639]
Description: wd-40 repeat protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.8e-16   59.6  18.3    0.00049   20.8   0.1    6.6  6  WD40      WD domain, G-beta repeat
  ------ inclusion threshold ------
      0.066   11.9   0.1          3    6.4   0.0    2.3  2  Nup160    Nucleoporin Nup120/160
      0.073   13.1   0.0       0.14   12.2   0.0    1.3  1  SSB       Single-strand binding protein family


Domain annotation for each model (and alignments):
>> WD40  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.0       2.4   1.4e+04      14      36 ..     252     274 ..     244     275 .. 0.55
   2 ?    4.2   0.0     0.015        89      25      36 ..     308     319 ..     283     319 .. 0.70
   3 !   11.9   0.1   5.4e-05      0.32       7      37 ..     381     428 ..     377     429 .. 0.71
   4 !   16.8   2.3   1.6e-06    0.0095       3      37 ..     444     506 ..     442     507 .. 0.76
   5 !   20.8   0.1   8.2e-08   0.00049       1      37 [.     511     546 ..     511     547 .. 0.85
   6 !   12.1   0.3   4.7e-05      0.28       7      37 ..     597     626 ..     590     626 .. 0.78

  Alignments for each domain:
  == domain 1  score: -2.8 bits;  conditional E-value: 2.4
                 EEEEEETTSSEEEEEETTSEEEE CS
        WD40  14 tslafspdgawlasGsdDgtvri 36 
                  s+a++   + las ++ g+v++
  KOO24332.1 252 LSCAVCAATSILASTDEEGNVYL 274
                 34433334444777667777765 PP

  == domain 2  score: 4.2 bits;  conditional E-value: 0.015
                 EEEEETTSEEEE CS
        WD40  25 lasGsdDgtvri 36 
                 l++G +Dgt+++
  KOO24332.1 308 LLCGARDGTIKL 319
                 679*9*****97 PP

  == domain 3  score: 11.9 bits;  conditional E-value: 5.4e-05
                 EESS.SSEEEEE.....EETTSSE...........EEEEETTSEEEEE CS
        WD40   7 ltGH.ssvtsla.....fspdgaw...........lasGsdDgtvriW 37 
                   GH ++vt +a     f++  +            ++s+s+D++vr+W
  KOO24332.1 381 TPGHsDWVTQIAlrpqhFDRKADAkgtareegmglFCSASRDHSVRVW 428
                 4699555999976666644444447777888888567889******** PP

  == domain 4  score: 16.8 bits;  conditional E-value: 1.6e-06
                 EEEEEESS.SSEEEEE................EETTSSE................EEEEETTSEEEEE CS
        WD40   3 clrtltGH.ssvtsla................fspdgaw................lasGsdDgtvriW 37 
                 cl++l GH  +vt+la                                       ++s+s Dgt+r+W
  KOO24332.1 444 CLHVLHGHaRWVTGLAigaarahlcspadpigA-----HghplttadddnrpipfVVSASADGTLRVW 506
                 9*******777*****99999999777555550.....25555555555568898889999******* PP

  == domain 5  score: 20.8 bits;  conditional E-value: 8.2e-08
                 TEEEEEEESS.SSEEEEEEETTSSE....EEEEETTSEEEEE CS
        WD40   1 gqclrtltGH.ssvtslafspdgaw....lasGsdDgtvriW 37 
                 g cl++l+GH  svt+l      ++    ++s+s+Dgt+r W
  KOO24332.1 511 GVCLGVLEGHtRSVTDL------DLrgarVLSASMDGTIRSW 546
                 579*******777****......666666889999******* PP

  == domain 6  score: 12.1 bits;  conditional E-value: 4.7e-05
                 EESS.SSEEEEEEETTSSEEEEEETTSEEEEE CS
        WD40   7 ltGH.ssvtslafspdgawlasGsdDgtvriW 37 
                  +GH ++v+ +    d++ ++s+sdD++v +W
  KOO24332.1 597 MRGHdDFVRTC--RFDQRRVVSASDDNKVLVW 626
                 38**766*989..44777799*********** PP

>> Nup160  Nucleoporin Nup120/160
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.9   0.0    0.0058        35     233     253 ..     416     436 ..     405     443 .. 0.82
   2 ?    6.4   0.0   0.00051         3     232     253 ..     493     514 ..     491     529 .. 0.90

  Alignments for each domain:
  == domain 1  score: 2.9 bits;  conditional E-value: 0.0058
                 EEEEETT-EEEEEETTTTEEE CS
      Nup160 233 lfalsrdgkLrvWnlltgkcl 253
                  +++srd+ +rvW ++  +++
  KOO24332.1 416 FCSASRDHSVRVWHVDVHSRT 436
                 5899*********99866655 PP

  == domain 2  score: 6.4 bits;  conditional E-value: 0.00051
                 EEEEEETT-EEEEEETTTTEEE CS
      Nup160 232 ylfalsrdgkLrvWnlltgkcl 253
                 +++++s dg+LrvW l++g cl
  KOO24332.1 493 FVVSASADGTLRVWRLTDGVCL 514
                 7999***************998 PP

>> SSB  Single-strand binding protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   2.3e-05      0.14      23      78 ..     107     163 ..     103     170 .. 0.90

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 2.3e-05
                 EEEEEEEEEEEEEEEETTCCEEEEEEEEEEEEEHHHHHHH.HHH--TT-EEEEEEEE CS
         SSB  23 navarftlatnrrfkdqegekdeetewhrvvvfgklaevv.aeylkkGslvyveGrl 78 
                 ++ +r  ++++rr++   ++++++   hr+ + +k  ev+ a+ l+ G +v+v+Gr+
  KOO24332.1 107 RTAVRAAIEIERRWRAPGSWTQSALPQHRCRANEKIGEVLgADLLSDGRRVVVSGRM 163
                 56678999***************************99998346789*********97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (639 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       372  (0.0207485); expected 358.6 (0.02)
Passed bias filter:                      260  (0.0145016); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.52u 0.25s 00:00:00.77 Elapsed: 00:00:00.42
# Mc/sec: 4572.80
//
Query:       KOO24333.1  [L=288]
Description: cysteine synthase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    8.8e-55  186.2   4.0    9.8e-55  186.0   4.0    1.0  1  PALP      Pyridoxal-phosphate dependent enzyme


Domain annotation for each model (and alignments):
>> PALP  Pyridoxal-phosphate dependent enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  186.0   4.0   5.4e-59   9.8e-55      52     294 .]       9     263 ..       1     263 [. 0.90

  Alignments for each domain:
  == domain 1  score: 186.0 bits;  conditional E-value: 5.4e-59
                 T..TTTSEEEEEBSSHHHHHHHHHHHHHT-EEEEEEETTS-HHHHHHHHHTT-EEEEE....CCHHHHHHHHHHHHHHH.STTCEE--TTTSHHHHHH. CS
        PALP  52 g..tgaktvveassGNhgralAaaaallGlkvtivvpadaspekvallrllGaevvev....ggdydeavaaaaelaae.gegaylvsqfdnptvieg. 142
                 g   ++ tvvea++G +g++lA++a++ G+k+ +v  +d+spek++l+r+lGa++++v      d+d+ v++a++ aae geg ++++qfdn ++  + 
  KOO24333.1   9 GklHPGGTVVEATAGSTGVSLALVARACGYKCLLVAADDTSPEKLRLIRALGARLEVVrpasIADPDHPVNVARRRAAElGEGSIFCDQFDNLANLRAh 107
                 2556889***************************************************87666669******99777777******************* PP

                 HHTHHHHHHHHTTTTEEEEEEE-SSSHHHHHHHHHHHHHSTT-EEEEEEECTTCGGTTCCS..S.SS..B..........SSS.CCSTCSCGTTCCHHH CS
        PALP 143 ygtiglEileqlggkpdavvvpvGgGgliaGiaaglkerrpdvrvigvepegsdalarslragrrvtvpvs.........dtiadglavgspselafel 232
                  + +g Ei+eq+ g++da+v+++G+Gg++aG++++lk+rrp+vrv+ ++p gs+ ++r + +g   t + +         dti++g++++   +++fe+
  KOO24333.1 108 EAGTGREIWEQTHGRVDAFVMGAGTGGTLAGVSRYLKARRPSVRVFLADPPGSALYHRVA-HGVLYTSQQQertarrhryDTIMEGVGCD-RVTRNFEA 204
                 ***************************************************999999999.4444444444577777888**********.66666666 PP

                 HSEEEEEEEEEEHHHHHHHHHHHHHHHSB-B-HHHHHHHHHHHHHHHHCCTTCEEEEEEE-B CS
        PALP 233 ldrlvdeivtvsdeealeamrllarregivvepssaaalaalklreagelkegdrvvviltg 294
                 +  +vd++  v+d+e ++++r+l ++eg++v+ s++++  ++  r a++l++g ++v++l++
  KOO24333.1 205 A--CVDDAFKVPDDESVAMARHLLHAEGLFVGASAGMNCVGA-VRAARKLGPGHTIVTVLCD 263
                 6..999************************************.*****************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (288 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       348  (0.0194099); expected 358.6 (0.02)
Passed bias filter:                      297  (0.0165653); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.25s 00:00:00.69 Elapsed: 00:00:00.42
# Mc/sec: 2076.11
//
Query:       KOO24334.1  [L=285]
Description: sco1 protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.5e-45  154.4   0.0    2.3e-45  153.8   0.0    1.3  1  SCO1-SenC      SCO1/SenC
    1.3e-08   34.7   0.0    6.2e-08   32.6   0.0    1.9  1  AhpC-TSA       AhpC/TSA family
    0.00012   22.3   0.0    0.00019   21.7   0.0    1.3  1  Thioredoxin_8  Thioredoxin-like
  ------ inclusion threshold ------
      0.017   14.9   0.0       0.14   11.8   0.0    2.1  1  Redoxin        Redoxin


Domain annotation for each model (and alignments):
>> SCO1-SenC  SCO1/SenC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  153.8   0.0   5.2e-49   2.3e-45       1     134 []      85     223 ..      85     223 .. 0.93

  Alignments for each domain:
  == domain 1  score: 153.8 bits;  conditional E-value: 5.2e-49
   SCO1-SenC   1 ggpFelvdqdgeavteedlegkpslvffgFthCpdvCpttlanmaevldalgeeaekvqplfiTvDPerDtpevlkeylea..fdpriigltGskeeia 97 
                 gg+F lvd dg++v+++dl gk++l++fgFt+Cpd+Cp +l ++++vl++l+++++++qp+fiT+DP+rDt ++lk+y e   f+pr+i+ltG+ ++++
  KOO24334.1  85 GGDFALVDWDGKPVSSKDLVGKWVLLYFGFTKCPDICPDELHKVTAVLKRLENQGQSIQPVFITIDPTRDTKARLKSYFETagFHPRFIALTGDDAAVK 183
                 689***************************************************************************875449*************** PP

   SCO1-SenC  98 kaakefrvyvek.vedees..dytvdHsssvyLvdpdgrv 134
                 ka++++rvy+ k +++e +  dy++dHs + yLvdp+g++
  KOO24334.1 184 KACRAYRVYFTKpTPEEIKrgDYLLDHSIISYLVDPEGEF 223
                 *********655155555589*****************87 PP

>> AhpC-TSA  AhpC/TSA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.6   0.0   1.4e-11   6.2e-08       7     117 ..      87     210 ..      85     240 .. 0.78

  Alignments for each domain:
  == domain 1  score: 32.6 bits;  conditional E-value: 1.4e-11
                 --EEESTTCEEEECHHHTTSEEEEEEESTST-C.CHHHHHHHHHHCHHHCCCTT..EEEEEEESSSCHHHHHHHHH-H........SSEEEE-..TTSH CS
    AhpC-TSA   7 dfelknadgetvslsdykgkpvvlffypkdwcp.vCttelpalaklyeefkerg..vevigvsvdspeshkkfiekes.......lnfpllsD..eegk 93 
                 df l ++dg++vs +d+ gk+v+l+f  +  cp  C++el +  +++++++++g  ++ + +++d+  + k+  + +          + l  D    +k
  KOO24334.1  87 DFALVDWDGKPVSSKDLVGKWVLLYFGFT-KCPdICPDELHKVTAVLKRLENQGqsIQPVFITIDPTRDTKARLKSYFetagfhpRFIALTGDdaAVKK 184
                 89************************999.67648*************999887225779999999998888888888888898844455555456677 PP

                 HHHHTT-EETT..TTECSCEEEEE-T CS
    AhpC-TSA  94 vakaygvlkee..kglalratfvidk 117
                 +++ay v++++   +   r+ +++d+
  KOO24334.1 185 ACRAYRVYFTKptPEEIKRGDYLLDH 210
                 77888888777665555555555554 PP

>> Thioredoxin_8  Thioredoxin-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.7   0.0   4.3e-08   0.00019       1      79 [.     105     190 ..     105     194 .. 0.72

  Alignments for each domain:
  == domain 1  score: 21.7 bits;  conditional E-value: 4.3e-08
                    .SEEEEEE--SSSHH.HHHHHHHHHHHHHHHHH.TTSEEEEEEE-SS-...HHHHHHHGGGS..-TTSEE.EE-TT-HHHHTT-S- CS
  Thioredoxin_8   1 gkvvlLyfgaswcpp.ckaftpklkelyeklkk.kkkveivyvsldkk...eeefekylkkn..kkpwlsvpfddkkrnklkkkyn 79 
                    gk+vlLyfg + cp+ c + + k++++ ++l++ ++ ++ v++ +d +   +   ++y++    ++ +++++ dd   +k ++ y+
     KOO24334.1 105 GKWVLLYFGFTKCPDiCPDELHKVTAVLKRLENqGQSIQPVFITIDPTrdtKARLKSYFETAgfHPRFIALTGDDAAVKKACRAYR 190
                    79************9898888888888888887789**********7611134445555544555666666666666666666665 PP

>> Redoxin  Redoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   3.2e-05      0.14       8     108 ..      87     234 ..      75     241 .. 0.81

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 3.2e-05
                 --ECCEETTCEEEEEHHHHTTSEEEEEEESTTT-HH.HHHTHHHHHTHHHHHHCSTTTEEEE.............................EESSSHHH CS
     Redoxin   8 dftlplaatdgnsvslsefkgkkvvvnfvpgafcPt.Csaehpyleklaellkekgvdvvav.............................vadndafv 76 
                 df l  ++ dg++vs +++ gk v+++f  +  cP  C  e+ +++ + ++l++ g ++  v                              + +da v
  KOO24334.1  87 DFAL--VDWDGKPVSSKDLVGKWVLLYFGFT-KCPDiCPDELHKVTAVLKRLENQGQSIQPVfitidptrdtkarlksyfetagfhprfiaLTGDDAAV 182
                 5555..569**********************.9995588888877776666677776665555577888888888888888888888888888888889 PP

                 HHHHHH....................TT-TSEEEE-TTSHHHHHTT-TTEEE CS
     Redoxin  77 kefwgk....................eglkfpvlsDgsaaftkalGlrleed 108
                 k+++ +                    ++  + +l+D++++f+  +G  l+ed
  KOO24334.1 183 KKACRAyrvyftkptpeeikrgdyllDHSIISYLVDPEGEFADYYGKSLTED 234
                 9999999999999999999999999877788889999999999999888877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (285 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       383  (0.021362); expected 358.6 (0.02)
Passed bias filter:                      336  (0.0187406); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.45u 0.24s 00:00:00.69 Elapsed: 00:00:00.40
# Mc/sec: 2142.47
//
Query:       KOO24335.1  [L=381]
Description: GMP-reductase 1 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    2.7e-83  279.8   0.9    3.9e-83  279.3   0.9    1.2  1  IMPDH        IMP dehydrogenase / GMP reductase domain
    0.00077   18.6   5.7    0.00096   18.3   4.7    1.4  1  FMN_dh       FMN-dependent dehydrogenase
  ------ inclusion threshold ------
      0.016   15.8   0.3      0.034   14.7   0.3    1.5  1  PAP2_C       PAP2 superfamily C-terminal
      0.033   14.4   0.3        1.7    8.8   0.0    2.4  2  PGM_PMM_III  Phosphoglucomutase/phosphomannomutase, alpha/bet


Domain annotation for each model (and alignments):
>> IMPDH  IMP dehydrogenase / GMP reductase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  279.3   0.9   8.7e-87   3.9e-83       2     337 ..      39     368 ..      38     376 .. 0.92

  Alignments for each domain:
  == domain 1  score: 279.3 bits;  conditional E-value: 8.7e-87
                 --GGGEEEE---B-S-GG.GSB--EESS....TTEEESSSEEE-SSTTT-SHHHHHHHHHTTSEEEE-SSS-HHHHHHHHHHHHTSTTSXBXTTSXB-E CS
                 xxxxxxxxxxxxxxxxxx.xxxxxxxxx....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       IMPDH   2 ltfddvllvpaksevlpk.evdlktklt....kkiklniPlvsaamdtvtesemAialareGgigvihknlsieeqaeevkkvkrspnaakdekgrllv 95 
                 l + dvll p++s++ ++ ev+l+ ++     k+    +P++ a+mdtv   +mA+++a++  i  ihk+ +++e        k  + aa++ +   +v
  KOO24335.1  39 LDYKDVLLRPKRSTLRSRsEVSLDRTFHfrhsKRSWTGTPMIVANMDTVGTFTMATEMAKHHCIVAIHKHYTVDEW-------K--QFAAEQPQAVPYV 128
                 679*************9989*99887754333778899*******************************9987654.......5..3455666777888 PP

                 EEEE-SSTTHHHHHHHHHHT..T-SEEEEE-STSSSHHHHHHHHHHHHHTTTSEEEEEEE-SHHHHHHHHHTT-SEEEE-SS-STTBHHHHHCSB---H CS
                 xxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       IMPDH  96 gaavgvkedalervkalvea..gvdvlvvdsahghsekvleavkeikkkveeveviaGnvataegakaLieagadavkvGiGpGsiCttrvvagvGvpq 192
                 + + g++++++++++a++++  gv ++++d+a+g+se  ++avk++++k+++ ++iaGnv+t+e +++Li +gad+vkvGiGpGs+Cttr  +gvG pq
  KOO24335.1 129 AVSAGTSANDMSKLDAILSTcpGVTFICLDVANGYSEFFVSAVKTVREKWPQHTIIAGNVVTNEMTEELIMHGADIVKVGIGPGSVCTTRKQTGVGYPQ 227
                 88889999999999999886559**************************************************************************** PP

                 HHHHHHHHHHHCTCT-EEEEES---SHHHHHHHHHTT-SEEEESCCCTTBTTSSSEEEEETTEEEEEEEETTSHHHHHH..-SS-TTS-..--SS-SBE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxx RF
       IMPDH 193 ltAvaevaeaakkagvpviaDGGikysgdivkAlaaGadavmlGsllagteEspgeviliegrkyKeyrGmgslgamkk..gskdryfqkkeklvpeGv 289
                 l+Av+e+a+aa+  g  v+aDGGi+  gd +kA+  G+d++m+G + ag++E+ g ++  +g+k+K++ Gm+s +amkk  g   +y         eG 
  KOO24335.1 228 LSAVIECADAAHGLGGYVCADGGITCPGDAAKAFGGGSDFIMMGGIWAGCDEAAGAIVERNGQKFKQFYGMSSNTAMKKhaGGVAEY------RSSEGK 320
                 *****************************************************************************6523344455......568*** PP

                 EEEEE--B-HHHHHHHHHHHHHHHHHHHT-SSHHHHHHH-EEEEE-HH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       IMPDH 290 egrvpykgsvkevveqlvgglrsgmgylGaktieelkekakfvritaa 337
                   +vpykg+ +++v  l+gglrs+++y+Ga+t+ee+ ++++f+r+t++
  KOO24335.1 321 TVEVPYKGPAAAIVLDLLGGLRSACTYIGAATLEEVPRRTTFIRVTQQ 368
                 **********************************************86 PP

>> FMN_dh  FMN-dependent dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.3   4.7   2.1e-07   0.00096     206     304 ..     169     275 ..     159     285 .. 0.89

  Alignments for each domain:
  == domain 1  score: 18.3 bits;  conditional E-value: 2.1e-07
                 HHHHHHHHHHSSEEEEEE.E-SHHHHHHHHHTTESEEEE--GGG......TSSTT---HHHCHHHHHHHH...SS-EEEESS--SHHHHHHHHHTT-SE CS
      FMN_dh 206 ddikwlreqtklplvvKG.vltaedakraveaGvdgivvSNHGG......RqldgapatidvLpeiveavgg.rievlvDgGirrGsDvlkAlalGAda 296
                 + +k++re+++   ++ G v+t e  ++++ +G+d++ v    G      +q     + +++  e+++a+ g    v +DgGi+   D++kA   G d+
  KOO24335.1 169 SAVKTVREKWPQHTIIAGnVVTNEMTEELIMHGADIVKVGIGPGsvcttrKQTGVGYPQLSAVIECADAAHGlGGYVCADGGITCPGDAAKAFGGGSDF 267
                 5799*******988888769*******************99888999998889999999***********99669************************ PP

                 EEESHHHH CS
      FMN_dh 297 vllGRpfl 304
                 +++G  ++
  KOO24335.1 268 IMMGGIWA 275
                 ****9875 PP

>> PAP2_C  PAP2 superfamily C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.7   0.3   7.5e-06     0.034      30      57 ..      82     112 ..      61     118 .. 0.77

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 7.5e-06
      PAP2_C  30 a...ilkvillllallglfliiasrkHYtvD 57 
                 a   ++ ++++ + +    +i+a +kHYtvD
  KOO24335.1  82 AnmdTVGTFTMATEMAKHHCIVAIHKHYTVD 112
                 15556889999999***************** PP

>> PGM_PMM_III  Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.2   0.0     0.021        95      47      77 ..      72     104 ..      62     113 .. 0.79
   2 ?    8.8   0.0   0.00038       1.7       9      62 ..     170     221 ..     161     235 .. 0.79

  Alignments for each domain:
  == domain 1  score: 3.2 bits;  conditional E-value: 0.021
                  EESSSCHHHHHHHHHTT.ECEEEETT.CEEEET CS
  PGM_PMM_III  47 etkvGdkyvleemkeeg.avlGgEeS.ghiifl 77 
                  ++ +G   +++ m+  g ++++ E+   h i+ 
   KOO24335.1  72 RSWTGTPMIVANMDTVGtFTMATEMAkHHCIVA 104
                  6679***********9989*******5555555 PP

  == domain 2  score: 8.8 bits;  conditional E-value: 0.00038
                  HHHHHHCHCSTTTCEEEEETTS-THHHHHHHHTT-EEEEESSSCHHHHHHHHHT CS
  PGM_PMM_III   9 lakylleeklkpgagvvktvmtslalervakklgiklvetkvGdkyvleemkee 62 
                  + k ++e k+++ + ++++v+t++++e+    +g+ +v++ +G   v+   k++
   KOO24335.1 170 AVKTVRE-KWPQHTIIAGNVVTNEMTEEL-IMHGADIVKVGIGPGSVCTTRKQT 221
                  4444555.6999999*************9.679999999999987777766655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (381 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       481  (0.026828); expected 358.6 (0.02)
Passed bias filter:                      395  (0.0220313); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.50u 0.28s 00:00:00.78 Elapsed: 00:00:00.43
# Mc/sec: 2653.64
//
Query:       KOO24336.1  [L=341]
Description: NHL repeat containing protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.9e-21   73.4   7.3    4.3e-05   23.3   0.5    5.3  5  NHL        NHL repeat
      5e-08   32.5   0.0     0.0025   17.0   0.0    2.6  2  DUF5128    6-bladed beta-propeller
  ------ inclusion threshold ------
      0.012   15.3   0.0       0.12   11.9   0.0    2.3  2  SGL        SMP-30/Gluconolactonase/LRE-like region
      0.055   12.7   0.0          3    7.0   0.0    2.4  2  TolB_like  TolB-like 6-blade propeller-like


Domain annotation for each model (and alignments):
>> NHL  NHL repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.6   0.0   3.1e-07    0.0014       4      27 ..      30      53 ..      27      54 .. 0.92
   2 !   11.4   0.0   5.8e-05      0.26       6      27 ..      79      99 ..      74     100 .. 0.82
   3 !   23.3   0.5   9.7e-09   4.3e-05       1      28 []     122     148 ..     122     148 .. 0.96
   4 !   17.5   0.0   6.9e-07    0.0031       3      28 .]     171     195 ..     169     195 .. 0.94
   5 ?    2.6   0.0     0.035   1.6e+02      14      27 ..     269     284 ..     257     285 .. 0.86

  Alignments for each domain:
  == domain 1  score: 18.6 bits;  conditional E-value: 3.1e-07
                EEEEEEETTTEEEEEECCCTEEEE CS
         NHL  4 PhGvavdsnGdiyVaDsenhrvqv 27
                P+ ++++++G+++++Ds n+r+qv
  KOO24336.1 30 PRHLCALPDGHLCISDSVNQRLQV 53
                7889*******************9 PP

  == domain 2  score: 11.4 bits;  conditional E-value: 5.8e-05
                EEEEETTTEEEEEECCCTEEEE CS
         NHL  6 GvavdsnGdiyVaDsenhrvqv 27
                G+a   n +++V + +nhrvq+
  KOO24336.1 79 GIAC-ENQQLFVVEGGNHRVQK 99
                6666.899*************8 PP

  == domain 3  score: 23.3 bits;  conditional E-value: 9.7e-09
                 BSSEEEEEEETTTEEEEEECCCTEEEEE CS
         NHL   1 fnyPhGvavdsnGdiyVaDsenhrvqvF 28 
                 +++PhGv++ + G+ +VaD+ n rv+v+
  KOO24336.1 122 LWCPHGVCI-NKGQAFVADYINGRVVVY 148
                 79*******.6***************98 PP

  == domain 4  score: 17.5 bits;  conditional E-value: 6.9e-07
                 SEEEEEEETTTEEEEEECCCTEEEEE CS
         NHL   3 yPhGvavdsnGdiyVaDsenhrvqvF 28 
                 yP G+av ++ +++Va+ +nhr+ vF
  KOO24336.1 171 YPCGIAV-KGEEVFVAELGNHRISVF 195
                 788****.*****************9 PP

  == domain 5  score: 2.6 bits;  conditional E-value: 0.035
                 EEEEEE..CCCTEEEE CS
         NHL  14 diyVaD..senhrvqv 27 
                 +++V+D   ++ r++v
  KOO24336.1 269 RVFVTDirAGHARIFV 284
                 79***********998 PP

>> DUF5128  6-bladed beta-propeller
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.5   0.0   1.3e-05     0.058      62      98 ..      38      74 ..      32     106 .. 0.83
   2 !   17.0   0.0   5.5e-07    0.0025      53     108 ..     170     225 ..     162     255 .. 0.79

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 1.3e-05
     DUF5128 62 dkrifvlDsaknnlfvFdkkGkfvrkIgaqGeGPgEY 98
                d+ + + Ds +++l v +++G fvr Ig+ G+G g  
  KOO24336.1 38 DGHLCISDSVNQRLQVITQEGDFVRSIGEPGSGNGQL 74
                78899****************************9865 PP

  == domain 2  score: 17.0 bits;  conditional E-value: 5.5e-07
     DUF5128  53 geiskikvvdkrifvlDsaknnlfvFdkkGkfvrkIgaqGeGPgEYlqindfiidk 108
                 +++  i v  + +fv +  + ++ vF+kkG+f+r  g +G+ Pg ++q  + ii k
  KOO24336.1 170 EYPCGIAVKGEEVFVAELGNHRISVFTKKGNFERILGGEGKEPGRFFQPRSVIIVK 225
                 5556677788899999999999****************************999974 PP

>> SGL  SMP-30/Gluconolactonase/LRE-like region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.8   0.0     0.066     3e+02      12      78 ..      39     103 ..      33     126 .. 0.59
   2 ?   11.9   0.0   2.7e-05      0.12     133     215 ..     122     200 ..     110     205 .. 0.83

  Alignments for each domain:
  == domain 1  score: 0.8 bits;  conditional E-value: 0.066
         SGL  12 gaLlwvDilgqrihrldpatgketvldtpe.svGaiaprkdgrlvvasksglalldlasgeletlade 78 
                 g L  +D  +qr+  ++++++  +++  p+  +G +   ++   +++++++l++++  + ++++la  
  KOO24336.1  39 GHLCISDSVNQRLQVITQEGDFVRSIGEPGsGNGQL---RGPCGIACENQQLFVVEGGNHRVQKLALG 103
                 556666666666666666666666655555323322...34666667777766665555566666655 PP

  == domain 2  score: 11.9 bits;  conditional E-value: 2.7e-05
         SGL 133 ltipNGlawspdgktlYlaDsltrkiwaydvdaeggklsnrrvf.adlkkge..gepDGlavDaeGnvwvAvwgggkvvrfdpdGk 215
                 l +p G+++++   + ++aD  ++++++yd+    g ++  r+f a+++k++  ++p G+av  e +v+vA +g++++++f+++G+
  KOO24336.1 122 LWCPHGVCINKG--QAFVADYINGRVVVYDI----GSMEHVRTFgARGSKEGelEYPCGIAVKGE-EVFVAELGNHRISVFTKKGN 200
                 567778888764..45679************....347889***999988888889******876.7****************997 PP

>> TolB_like  TolB-like 6-blade propeller-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.4   0.0    0.0085        38      28      90 ..      38      98 ..      26     104 .. 0.76
   2 ?    7.0   0.0   0.00067         3      21      93 ..     125     196 ..     113     251 .. 0.87

  Alignments for each domain:
  == domain 1  score: 3.4 bits;  conditional E-value: 0.0085
   TolB_like 28 ddilvilDlhgddffyaysypelqfvssfakrGrgpeemlsaeefriskdslwvldkskltaa 90
                d+ l+i D  ++++      +e  fv+s++++G g +    +  + +++++l+v++  + +++
  KOO24336.1 38 DGHLCISDSVNQRLQ--VITQEGDFVRSIGEPGSGNGQLRGPCGIACENQQLFVVEGGNHRVQ 98
                556666666666632..2356889******************************986655555 PP

  == domain 2  score: 7.0 bits;  conditional E-value: 0.00067
   TolB_like  21 PfrikvkddilvilDlhgddffyaysypelqfvssfakrGrgpeemlsaeefriskdslwvldkskltaakii 93 
                 P  +  + +++ + D  + + + +y   +++ v+ f+ rG + +e   +  + +++++++v++  + ++  + 
  KOO24336.1 125 PHGVCINKGQAFVADYINGR-VVVYDIGSMEHVRTFGARGSKEGELEYPCGIAVKGEEVFVAELGNHRISVFT 196
                 67777788899999999888.88999*******************999999**********998855544443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (341 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       527  (0.0293937); expected 358.6 (0.02)
Passed bias filter:                      353  (0.0196888); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.48u 0.25s 00:00:00.73 Elapsed: 00:00:00.41
# Mc/sec: 2516.20
//
Query:       KOO24337.1  [L=112]
Description: DNA helicase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.9e-10   40.7   0.0    2.3e-10   40.4   0.0    1.0  1  AAA_12    AAA domain


Domain annotation for each model (and alignments):
>> AAA_12  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.4   0.0   1.3e-14   2.3e-10      31     124 ..       1      90 [.       1      96 [. 0.93

  Alignments for each domain:
  == domain 1  score: 40.4 bits;  conditional E-value: 1.3e-14
      AAA_12  31 srfpsklfYkgkLkdaesvkkreleaqealeepleplvfidvekseeekekkeksyiNeeEaelvvklvekllkkgseeerkkigvitpYraqv 124
                 +rf+s+ +Y+g+L+++   + r+     a+++   p++fi+v+ +e+ ++   +s+ N+ Eae ++ l+e +l +g  + + ++gv+tpY aq 
  KOO24337.1   1 MRFASEVIYSGQLRSGLPPSARPPVRGFAWPSAVVPIAFIEVDAHEQIEH---DSKLNRLEAERLMALLEMVLVAGDVS-TAEVGVVTPYTAQR 90 
                 79***************8888888889***************98887777...69**********************99.9************6 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (112 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       325  (0.0181271); expected 358.6 (0.02)
Passed bias filter:                      270  (0.0150594); expected 358.6 (0.02)
Passed Vit filter:                        12  (0.000669307); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.25s 00:00:00.63 Elapsed: 00:00:00.41
# Mc/sec: 821.77
//
Query:       KOO24338.1  [L=469]
Description: transposable element [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.2e-25   90.6   0.0    1.8e-25   90.0   0.0    1.1  1  RVT_2           Reverse transcriptase (RNA-dependent DNA poly
  ------ inclusion threshold ------
       0.12   12.4   1.9        1.3    9.0   1.7    2.5  2  Neocarzinostat  Neocarzinostatin family


Domain annotation for each model (and alignments):
>> RVT_2  Reverse transcriptase (RNA-dependent DNA polymerase)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   90.0   0.0     2e-29   1.8e-25      32     209 ..      16     197 ..      11     227 .. 0.89

  Alignments for each domain:
  == domain 1  score: 90.0 bits;  conditional E-value: 2e-29
       RVT_2  32 kykarlvaqGfsqkagedydevfaPvirldsvrLllalaaeeelvvhqldvdsafLnaeldeevyvkqPpGf...eidreeekvykLnkslyGlkqapl 127
                 k+kar  + G sq+ g+dy e fa  +r  sv++++ l+++e+++ +++d++ a+L++++d +vyv q +G    +  + e  ++kL+k++yG  qa++
  KOO24338.1  16 KFKARFCVVGTSQVKGQDYFESFASGARGTSVKMVVILTVVEGWIDFHFDLKGAYLDSNIDTDVYVDQAAGLdpvVGPNGERMCMKLDKAIYGTVQAAR 114
                 89*********************************************************************7321345667889*************** PP

       RVT_2 128 lWnekidkvLkklgferseaesGlyvrgtgegklivalyvddlliagsdikiledvkkelakk.fklkdlgkvskfLGieiaq 209
                 l+ +k    L  +gfe s   + +y   +  g++++a +vdd +  +s + +l+ +  e+ k+ f++++ g  ++ LG   ++
  KOO24338.1 115 LFTKKFRAALVSIGFEVSLDDEAVYRLDHKLGRIVLATHVDDGIGGASTTAVLNWMYDEIIKHgFSFSQQGGWHTILGFGAKR 197
                 ********************************************999999****98887765549999999999999987666 PP

>> Neocarzinostat  Neocarzinostatin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.2   0.0     0.081   7.3e+02      12      34 ..     201     224 ..     198     235 .. 0.83
   2 ?    9.0   1.7   0.00015       1.3      22      97 ..     314     389 ..     299     394 .. 0.87

  Alignments for each domain:
  == domain 1  score: 0.2 bits;  conditional E-value: 0.081
  Neocarzinostat  12 gdvvtvsgtGftagst.lalgeCv 34 
                     + +vt+s+ G   +++ ++l + v
      KOO24338.1 201 NRTVTISAGGHIRDLVrMHLADEV 224
                     679********9999988887655 PP

  == domain 2  score: 9.0 bits;  conditional E-value: 0.00015
  Neocarzinostat  22 ftagstlalgeCvavapggvaCnkaagavvtadasGkisasltvaksFegvlsdGssigavdcatvacvialadas 97 
                     +t  ++    e v  ++ ++a + aa  +++a+ +G + +s+t   +F ++   G  +  + c+  a+v+a +das
      KOO24338.1 314 YTISLAGGCMEAVSRRQHSTAVDTAAAEMFAASVAGAVLVSVTSVLAFVSFGVLGHQTVRIWCDNEAAVMAANDAS 389
                     5555555555667788899999*****************************99999999************88876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (469 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       521  (0.0290591); expected 358.6 (0.02)
Passed bias filter:                      413  (0.0230353); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.51u 0.28s 00:00:00.79 Elapsed: 00:00:00.44
# Mc/sec: 3186.18
//
Query:       KOO24339.1  [L=459]
Description: hypothetical protein Ctob_006882 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    0.00046   19.8   0.1     0.0011   18.6   0.0    1.7  2  PARP      Poly(ADP-ribose) polymerase catalytic domain


Domain annotation for each model (and alignments):
>> PARP  Poly(ADP-ribose) polymerase catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.0      0.37   6.7e+03     139     144 ..     163     168 ..     135     204 .. 0.44
   2 !   18.6   0.0   6.2e-08    0.0011      49      73 ..     337     361 ..     307     403 .. 0.80

  Alignments for each domain:
  == domain 1  score: -3.5 bits;  conditional E-value: 0.37
                 EEEE-E CS
        PARP 139 svkgkg 144
                   +++ 
  KOO24339.1 163 AARAAA 168
                 222221 PP

  == domain 2  score: 18.6 bits;  conditional E-value: 6.2e-08
                 EEEEEEEE-GGGHHHHHHH-S--S- CS
        PARP  49 rrlLfHGsrltnvasilsqGLriap 73 
                  ++L+HG+r+ nv +i+++G+r++ 
  KOO24339.1 337 VMVLYHGTRSVNVDAIVKEGFRLPD 361
                 799******************9865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (459 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1521  (0.0848346); expected 358.6 (0.02)
Passed bias filter:                      414  (0.0230911); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.58u 0.27s 00:00:00.85 Elapsed: 00:00:00.41
# Mc/sec: 3395.20
//
Query:       KOO24340.1  [L=717]
Description: hypothetical protein Ctob_006884 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.011   16.1   1.4      0.027   14.7   1.4    1.6  1  AAA_22    AAA domain


Domain annotation for each model (and alignments):
>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.7   1.4   1.5e-06     0.027      36     133 ..     517     635 ..     501     638 .. 0.77

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 1.5e-06
      AAA_22  36 eeerpevvfvtlpsstsskdllrellralglelkaerlsseellealeqalrarav......ielliiDEaqhlrseealeeLrsllnl.......... 118
                 e++r + ++ +++ + s++ ++++l+ +lg+ ++++r+s+ ++le+++q + ar++      +e++ ++  ++  +e a+eeLrs+l            
  KOO24340.1 517 EYMRHTEAYLDANTPASLRGMAEMLVIKLGELTNKSRASRMQMLEQMQQRSVARSRslseveREVVALEQQERW-NEHAYEELRSMLAAalrdpdaqpe 614
                 3356666789999999*********************************************************9.788888888884333333333334 PP

      AAA_22 119 ......srkgvqliLvGtpel 133
                       +r  +ql+L+   e+
  KOO24340.1 615 lfrrlaNRRELQLVLMTRAEA 635
                 444444488888888876665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (717 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       566  (0.031569); expected 358.6 (0.02)
Passed bias filter:                      339  (0.0189079); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.58u 0.26s 00:00:00.84 Elapsed: 00:00:00.41
# Mc/sec: 5294.56
//
Query:       KOO24341.1  [L=279]
Description: hypothetical protein Ctob_006886 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (279 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       396  (0.0220871); expected 358.6 (0.02)
Passed bias filter:                      326  (0.0181828); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.40u 0.19s 00:00:00.59 Elapsed: 00:00:00.35
# Mc/sec: 2412.62
//
Query:       KOO24342.1  [L=228]
Description: hypothetical protein Ctob_006880 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (228 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       466  (0.0259914); expected 358.6 (0.02)
Passed bias filter:                      346  (0.0192983); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.40u 0.26s 00:00:00.66 Elapsed: 00:00:00.40
# Mc/sec: 1710.34
//
Query:       KOO24343.1  [L=526]
Description: hypothetical protein Ctob_006881 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.9e-09   36.1  12.3      2e-08   34.2  12.3    2.1  1  zf-MYND   MYND finger
  ------ inclusion threshold ------
      0.027   13.8   0.0      0.046   13.1   0.0    1.3  1  DUF4191   Domain of unknown function (DUF4191)


Domain annotation for each model (and alignments):
>> zf-MYND  MYND finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.2  12.3   2.2e-12     2e-08       1      38 []     289     331 ..     278     331 .. 0.85

  Alignments for each domain:
  == domain 1  score: 34.2 bits;  conditional E-value: 2.2e-12
                 -TTT--.....B-SC..E-TTTS-SEESSHHHHHHCH.HHHCCCH CS
     zf-MYND   1 CavCgk....aealk..kCagCksvfYCskeCqradw.ksHkteC 38 
                 C++C       +  +   C+gCksv YCs++Cq+++w + H+  C
  KOO24343.1 289 CESCAIefsdGR--SyaICGGCKSVLYCSAACQKEHWqTAHRAVC 331
                 777777663333..2559*******************888***99 PP

>> DUF4191  Domain of unknown function (DUF4191)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.0   5.1e-06     0.046      50     106 ..      95     156 ..      63     168 .. 0.81

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 5.1e-06
     DUF4191  50 lilllilgil.lgllvalivltrraekaayaqiegqpGaaaavlenlrr....gwrvepava 106
                 +++  ++g l +g  va ivl++ ae+  y+++ ++ G  +a +e++r     +wr +p v+
  KOO24343.1  95 HVVNELVGCLgAGNYVAAIVLEKLAERPIYHRAVNENGGVEALIEQVRArleaNWRGTPSVK 156
                 445555554439999*******************************9988888999999886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (526 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       644  (0.0359195); expected 358.6 (0.02)
Passed bias filter:                      393  (0.0219198); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.55u 0.24s 00:00:00.79 Elapsed: 00:00:01.04
# Mc/sec: 1529.91
//
Query:       KOO24344.1  [L=624]
Description: pppde peptidase domain-containing protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.9e-33  114.4   0.0    5.5e-33  113.9   0.0    1.2  1  Peptidase_C97  PPPDE putative peptidase domain
    4.5e-13   49.1   3.6    6.5e-13   48.5   3.6    1.2  1  PUL            PUL domain
  ------ inclusion threshold ------
        0.2   11.8   0.0       0.39   10.9   0.0    1.4  1  LigA           Aromatic-ring-opening dioxygenase LigAB, LigA 


Domain annotation for each model (and alignments):
>> Peptidase_C97  PPPDE putative peptidase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  113.9   0.0   9.3e-37   5.5e-33       2     150 ..       4     145 ..       3     146 .. 0.96

  Alignments for each domain:
  == domain 1  score: 113.9 bits;  conditional E-value: 9.3e-37
                    EEEEEEEETT...TTHHHHHHHHHHSS-----EEEEEEETTEEEE--T.....T-SEEESTT-..STT-.S-SEEEEEEEE---HHHHHHHHHHHH CS
  Peptidase_C97   2 kvelivyDlsldkkglarrvyptllGkkieGiyhtgvevygleyafggkekeegGifelkpgt..tsegakpresieigeTevteeevraileels 95 
                    kv+l+vyDls   +glar++++ +lG +++ + htg++v g+ey+++g      G + l+  +   s+g+   e++e+geTev++e ++++++  +
     KOO24344.1   4 KVQLYVYDLS---QGLARTLSMQFLGVQLDIVPHTGIVVFGREYFYSG------GLQALPKDQfaRSHGIPTCEIVELGETEVPRELFEEFVDARR 90 
                    79********...*********************************77......9998888888779998999999******************** PP

                    TT--GGG-BTTTB-HHHHHHHHHHHHHS----HHHHTHHHHHHTSHHHHHHTTT- CS
  Peptidase_C97  96 seytgdkYnLiskNCnhFtdelvdfLtgkkiPewinrlarivlstptvklllpme 150
                     +y++ kY+L+++NCnhFt+e+++fL gk+iPe+i + ++iv+ tp+++++ +m+
     KOO24344.1  91 DDYSAAKYDLLTHNCNHFTEEATQFLLGKSIPERIRQVPEIVMRTPMGAMFAQML 145
                    ***************************************************9986 PP

>> PUL  PUL domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.5   3.6   1.1e-16   6.5e-13       4     239 ..     318     559 ..     315     575 .. 0.72

  Alignments for each domain:
  == domain 1  score: 48.5 bits;  conditional E-value: 1.1e-16
         PUL   4 ktyllfkkanldkllkKlkelNakllsagqkdlalsdeela....tLeallaale...ssseat..qlel.llklltsWppedrfPalDLlRlllldpr 92 
                  ++l+ k ++  ++l+ ++          ++d ++s+e  a    +L+a++++ +   +   a   q+++ +l ll  Wpp+++f +l L R+l+++++
  KOO24344.1 318 MQPLTAKDGPTAPVLANVRAA-------VKADATMSEERRAafeaDLQAAFDDPNlidT---ARaaQIAAdVLALLRVWPPAKQFGLLYLTRVLAASSD 406
                 566677777777777777766.......3566778887777333355555554445532...222333322588899*******************966 PP

         PUL  93 vsa.yfaeeeggktissllslllssals..ssapkalennrmlalRllaNlFssplgrellls.....kaeslletle.slltssll..ssnknlrial 180
                 +++  +    + k+  +lls+   +al+  +++p ++ + r++al l++Nl s ++g   l++     + e+ +  l+  +++ + l  +s+  l  + 
  KOO24344.1 407 AVSaALL---SVKLPVTLLSA--RAALElgAPTPAPR-AARLMALALVTNLASRSSGVVALVTgsdpeR-ETNVPGLAvVAAAVAALreTSDAALCQMG 498
                 6550444...34677899998..66666544444444.77**********************9999963.44444444033333334779999****** PP

         PUL 181 atlllNlavllhk...skdelseedqvellaallealeeeeedsEalyRlLvAlGtlvyaap 239
                 a l++N+++ l++   + +el ++  + ll a+l+al +  +d+Ea+ R+L  lG+l +  +
  KOO24344.1 499 AALAYNVSLHLRAlpaECSELRSKLVAALLGAVLDALPS-LTDKEAVGRALSVLGHLWHRPK 559
                 ***********88886668899999************88.*****************98733 PP

>> LigA  Aromatic-ring-opening dioxygenase LigAB, LigA subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   6.6e-05      0.39       9      49 ..     345     385 ..     343     417 .. 0.81

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 6.6e-05
                 GSHHHHHHHHHSHHHHHHHS---HHHHHHHHTT-HHHHHHH CS
        LigA   9 neaenRerFladeeayldeygLteeqkeavlardwlkllal 49 
                 +++e R++F+ad +a++d+ +L +  + a  a d+l+ll+ 
  KOO24344.1 345 MSEERRAAFEADLQAAFDDPNLIDTARAAQIAADVLALLRV 385
                 67899*********************************985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (624 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       512  (0.0285571); expected 358.6 (0.02)
Passed bias filter:                      300  (0.0167327); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.58u 0.24s 00:00:00.82 Elapsed: 00:00:00.42
# Mc/sec: 4429.12
//
Query:       KOO24345.1  [L=281]
Description: metal-dependent membrane protease [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.5e-15   56.6   7.5    2.5e-15   56.6   7.5    2.0  2  CPBP      CPBP intramembrane metalloprotease


Domain annotation for each model (and alignments):
>> CPBP  CPBP intramembrane metalloprotease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.2      0.19   3.4e+03      56      56 ..     120     120 ..      77     157 .. 0.59
   2 !   56.6   7.5   1.4e-19   2.5e-15       4      91 ..     185     271 ..     182     272 .. 0.93

  Alignments for each domain:
  == domain 1  score: -1.5 bits;  conditional E-value: 0.19
                 H CS
        CPBP  56 g 56 
                 +
  KOO24345.1 120 S 120
                 1 PP

  == domain 2  score: 56.6 bits;  conditional E-value: 1.4e-19
                 THHHHHHHHHHHHHHHHHHHTTCHHHHHHHH.S-HHHHHHHHHHHHHCSGGGHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH CS
        CPBP   4 lllvfllalllapllEEllfRglllqllqergsstlailissilFglaHlpngpsvllaalaGlvlgylylktgsllaaillHallnl 91 
                 ll+ +++ ++ ap++EE+l+Rg++l++l  ++  t+a+ + ++lFgl H     ++l+++ +Gl++++ly+++++ll+++l+Hal+n 
  KOO24345.1 185 LLVGCIAPCVTAPFFEEVLYRGFVLPALLCFVPLTAALPLHALLFGLHHRSL-ATLLPLSTLGLLWAALYVRSRNLLVPMLVHALWNC 271
                 567788899********************997779**************998.68*******************************95 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (281 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       410  (0.022868); expected 358.6 (0.02)
Passed bias filter:                      224  (0.0124937); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.23s 00:00:00.63 Elapsed: 00:00:00.39
# Mc/sec: 2176.71
//
Query:       KOO24346.1  [L=197]
Description: hypothetical protein Ctob_007094, partial [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (197 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       314  (0.0175135); expected 358.6 (0.02)
Passed bias filter:                      259  (0.0144459); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.23s 00:00:00.59 Elapsed: 00:00:00.37
# Mc/sec: 1616.51
//
Query:       KOO24347.1  [L=431]
Description: hypothetical protein Ctob_007090 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.5e-12   47.0   0.0      2e-12   46.6   0.0    1.1  1  p450      Cytochrome P450


Domain annotation for each model (and alignments):
>> p450  Cytochrome P450
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.6   0.0   1.1e-16     2e-12     266     375 ..     254     365 ..     250     366 .. 0.94

  Alignments for each domain:
  == domain 1  score: 46.6 bits;  conditional E-value: 1.1e-16
                 HHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHCCTTT...T-HHHHCCT-HHHHHHHHHHHHHSCSSTTEEEEESSSCEEETTEEE-TT- CS
        p450 266 tvlellfaGvdTtsstlswaLyeLaknPevqeklreEidevlgdkr...eptyddlqklpyldavikEtLRlhpvvplllpRevtkdvvirgylipkGt 361
                 ++l  l+ +v+ t++ l+  L+    +P++ ++l  E   vl++k+   +++ ++l+ +p+l+ +++Et+R +p+      R+++ d+ ++ +++p+Gt
  KOO24347.1 254 SALRQLASSVEQTTALLCNLLAATQLHPKAAAALAIEQAAVLKGKDpklPISTAELEAMPLLNSFVRETMRVYPPCR-PAARVLKADLAVGAVKLPAGT 351
                 567788889999******************************7767799****************************.99******************* PP

                 EEEEEHHHHHT-TT CS
        p450 362 evivnlyalhrdpe 375
                  + + +   h dpe
  KOO24347.1 352 LIAPEPFVAHFDPE 365
                 ***********998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (431 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       334  (0.018629); expected 358.6 (0.02)
Passed bias filter:                      256  (0.0142785); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.22s 00:00:00.68 Elapsed: 00:00:00.38
# Mc/sec: 3434.90
//
Query:       KOO24348.1  [L=92]
Description: hypothetical protein Ctob_007091 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.6e-07   29.1   0.1     0.0045   16.9   0.0    3.1  3  LRR_6     Leucine Rich repeat
     0.0022   18.3   0.0        1.3    9.6   0.0    2.3  2  LRR_4     Leucine Rich repeats (2 copies)
  ------ inclusion threshold ------
      0.012   16.2   0.0      0.015   15.8   0.0    1.2  1  Ank_2     Ankyrin repeats (3 copies)
      0.013   15.3   0.2        4.2    7.2   0.1    2.5  2  LRR_8     Leucine rich repeat


Domain annotation for each model (and alignments):
>> LRR_6  Leucine Rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   0.0     1e-06    0.0045       4      24 .]       3      23 ..       1      23 [. 0.92
   2 ?    1.4   0.0     0.099   4.5e+02      16      24 .]      45      53 ..      45      53 .. 0.90
   3 !    7.4   0.0    0.0012       5.3       3      16 ..      62      75 ..      60      77 .. 0.86

  Alignments for each domain:
  == domain 1  score: 16.9 bits;  conditional E-value: 1e-06
       LRR_6  4 hLteLdLsgNdIgDeGaeaLa 24
                 L+ L L+ N++gD+G++aLa
  KOO24348.1  3 RLKLLYLNRNKFGDDGVTALA 23
                68999***************8 PP

  == domain 2  score: 1.4 bits;  conditional E-value: 0.099
       LRR_6 16 gDeGaeaLa 24
                +D G++aL+
  KOO24348.1 45 TDRGGKALS 53
                799****96 PP

  == domain 3  score: 7.4 bits;  conditional E-value: 0.0012
       LRR_6  3 thLteLdLsgNdIg 16
                ++Lt L+Lsg d++
  KOO24348.1 62 PKLTFLNLSGTDVT 75
                79********9987 PP

>> LRR_4  Leucine Rich repeats (2 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.7   0.0    0.0023        10      22      35 ..       1      13 [.       1      23 [. 0.73
   2 !    9.6   0.0   0.00029       1.3      21      40 ..      60      75 ..      47      79 .. 0.75

  Alignments for each domain:
  == domain 1  score: 6.7 bits;  conditional E-value: 0.0023
                -TT--EEE-.-S-- CS
       LRR_4 22 lpnLkeLdLsgNnl 35
                +p Lk L+L++N +
  KOO24348.1  1 MPRLKLLYLNRN-K 13
                678888888777.3 PP

  == domain 2  score: 9.6 bits;  conditional E-value: 0.00029
                H-TT--EEE-.-S-----GG CS
       LRR_4 21 klpnLkeLdLsgNnlitdld 40
                 lp+L+ L+Lsg     d++
  KOO24348.1 60 YLPKLTFLNLSGT----DVT 75
                3899999999887....665 PP

>> Ank_2  Ankyrin repeats (3 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.8   0.0   3.4e-06     0.015      14      81 ..       5      76 ..       2      78 .. 0.80

  Alignments for each domain:
  == domain 1  score: 15.8 bits;  conditional E-value: 3.4e-06
       Ank_2 14 klLl.egadpnkngktaLhyAakngnleivklLleh...adndgrtpLhyAarsghleivklLlekgadinl 81
                klL  + ++++++g taL +A  +g+   ++l+  h   +++ g  +L +Aa+ g+l  + +L  +g d+++
  KOO24348.1  5 KLLYlNRNKFGDDGVTALAAALTEGSWGSLRLITLHdtaTTDRGGKALSNAAKDGYLPKLTFLNLSGTDVTA 76
                5664455555579************888888888777765577889******99**9999999877888876 PP

>> LRR_8  Leucine rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.2   0.0    0.0019       8.4      25      36 ..       2      13 ..       1      23 [. 0.64
   2 ?    7.2   0.1   0.00093       4.2      48      60 ..      61      73 ..      29      74 .. 0.93

  Alignments for each domain:
  == domain 1  score: 6.2 bits;  conditional E-value: 0.0019
                TT--EEE--SS- CS
       LRR_8 25 snLkvLdLsnNl 36
                ++Lk L+L++N+
  KOO24348.1  2 PRLKLLYLNRNK 13
                455555555554 PP

  == domain 2  score: 7.2 bits;  conditional E-value: 0.00093
                --S-.EEE--SS- CS
       LRR_8 48 LpsLrsLdLsgNr 60
                Lp+L++L+Lsg++
  KOO24348.1 61 LPKLTFLNLSGTD 73
                99********986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (92 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       356  (0.0198561); expected 358.6 (0.02)
Passed bias filter:                      267  (0.0148921); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.32u 0.20s 00:00:00.52 Elapsed: 00:00:00.33
# Mc/sec: 823.15
//
Query:       KOO24349.1  [L=86]
Description: hypothetical protein Ctob_007092 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.1e-05   24.3   0.0      3e-05   23.8   0.0    1.3  1  RRM_1     RNA recognition motif. (a.k.a. RRM, RBD, or RNP dom


Domain annotation for each model (and alignments):
>> RRM_1  RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.8   0.0   1.7e-09     3e-05      32      69 ..       2      39 ..       1      40 [. 0.93

  Alignments for each domain:
  == domain 1  score: 23.8 bits;  conditional E-value: 1.7e-09
                EETTTSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEE CS
       RRM_1 32 rdetgkskgfafVeFeskedAekAlealngkklggrel 69
                 d++g+s+g++ V F + ++A+kA++ +n+  l gr++
  KOO24349.1  2 VDADGRSRGCGTVLFSTTREAAKAIQLFNESFLLGRQI 39
                5689********************************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (86 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       423  (0.0235931); expected 358.6 (0.02)
Passed bias filter:                      249  (0.0138881); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.33u 0.26s 00:00:00.59 Elapsed: 00:00:00.39
# Mc/sec: 658.25
//
Query:       KOO24350.1  [L=495]
Description: hypothetical protein Ctob_007086 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (495 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1702  (0.09493); expected 358.6 (0.02)
Passed bias filter:                      577  (0.0321825); expected 358.6 (0.02)
Passed Vit filter:                        53  (0.0029561); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.56u 0.26s 00:00:00.82 Elapsed: 00:00:00.40
# Mc/sec: 3742.49
//
Query:       KOO24351.1  [L=327]
Description: phospholipase carboxylesterase family protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    9.1e-13   48.5   0.1    2.2e-12   47.2   0.1    1.6  1  Abhydrolase_2  Phospholipase/Carboxylesterase
     0.0037   17.9   0.0     0.0088   16.7   0.0    1.6  1  Abhydrolase_6  Alpha/beta hydrolase family
  ------ inclusion threshold ------
      0.038   15.0   0.9      0.083   13.9   0.9    1.5  1  DUF5302        Family of unknown function (DUF5302)
      0.041   13.7   0.0      0.067   13.0   0.0    1.3  1  Abhydrolase_3  alpha/beta hydrolase fold
      0.092   12.3   0.0       0.15   11.6   0.0    1.3  1  DLH            Dienelactone hydrolase family


Domain annotation for each model (and alignments):
>> Abhydrolase_2  Phospholipase/Carboxylesterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.2   0.1   6.2e-16   2.2e-12      13     214 ..      99     324 ..      93     327 .] 0.74

  Alignments for each domain:
  == domain 1  score: 47.2 bits;  conditional E-value: 6.2e-16
                    --EEEEEE--TT--S.HHHHHHHH...TT--TTEEEEEE---EEE-GGGTT-EEE-S.S-B--SSTTS.....-B-HHHHHHHHHHHHH...HHHH CS
  Abhydrolase_2  13 aqavviflHGlGdsg.hawaeaakt..eaalpnikfifphgpelpvtlnggmrmpaW.fdlvglspek.....kedeagikksaeklee...lida 96 
                    a  ++i lHGlG++  +++  + +   + +    + i+   p+ p+   g++  + W fd+++l   +      ++ea ++k +++  +   + +a
     KOO24351.1  99 ADLLIIVLHGLGATNrDLVDVVPMLieQEPKLSAARIVTVCPQAPPGPMGNA--W-WtFDVQSLIMTQmmpagPQKEAAMAKMIREKPQdldTCRA 191
                    455899*********7333333332112233334445555555555433333..3.3489887643332244577787777777655431225666 PP

                    HHHTT..............--GGGEEEEEETHHHHHHHHHHHT-SS..--SEEEEES---TTGGGTTTTS-GGGGG-EEEEEEETT-SSS-HHHHH CS
  Abhydrolase_2  97 elkkg..............ipssriiigGFSqGaalalylaltlpk..klggivafsgalplsqklessatavtkklpilqiHgeeDpvvplalgk 176
                     +k+               +  +r ++ GFS Ga+ +l  al+ ++    +g++ ++ga +   +++    +    lp++ + g  D ++p   ++
     KOO24351.1 192 RMKQLieearaiaggaagqLSPKRLVLCGFSLGAITSLDVALQMKEgeGPSGVIFMNGAPIVVDEWAAGLKRHS-GLPVHITSGLNDMTLPNYSSE 286
                    77777888899999***************************9999866789****************9988888.9******************** PP

                    HHHHHHHTTS-GEEEEEETT--SS--HH.HHHHHHHHHH CS
  Abhydrolase_2 177 aakevlkkllkkvelksyeglaHsidee.emqdikeflk 214
                     + ++l+++      ++y+ ++H+i ++  +q+i++fl+
     KOO24351.1 287 WVRQLLQTNGAT-VTHKYHPGGHEIGGKdVVQSIASFLS 324
                    *********995.5567777*****87516899999997 PP

>> Abhydrolase_6  Alpha/beta hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.0   2.5e-06    0.0088       1      98 [.     103     253 ..     102     315 .. 0.62

  Alignments for each domain:
  == domain 1  score: 16.7 bits;  conditional E-value: 2.5e-06
                    EEEE--GC.....GC.HHHH.....HHHHCCTCEEEEE--T....TST.............................S-GGCS--HHHCHHHHHHH CS
  Abhydrolase_6   1 vlllHGagssassWl.vapL.....aallaagvhvlapDlp....GhG.............................rsdpppldledladlaall 57 
                    +++lHG+g++ ++   v+p+      +l+aa++ +++p++p    G+                              r  p +ld ++ a+  +l+
     KOO24351.1 103 IIVLHGLGATNRDLVdVVPMlieqePKLSAARIVTVCPQAPpgpmGNAwwtfdvqslimtqmmpagpqkeaamakmiREKPQDLDTCR-ARMKQLI 197
                    7899****99888845667789999999999*9999****854443324555555555555555544444444444333444444455.4445566 PP

                    CCTT...........TTSEEEEEETCHHHHHHHHHHCC..........EE.EEES-...- CS
  Abhydrolase_6  58 delaa.........gggpvvlvGHSlGGalalaaapla........lvvg.vlldppp.t 98 
                    +e +a         ++++ vl G SlG++ +l    +a        + +g +++++ p +
     KOO24351.1 198 EEARAiaggaagqlSPKRLVLCGFSLGAITSLD---VAlqmkegegP-SGvIFMNGAPiV 253
                    6665566677789999999**********8888...55555777753.556888884431 PP

>> DUF5302  Family of unknown function (DUF5302)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.9   2.3e-05     0.083       5      28 ..      41      64 ..      38      74 .. 0.85

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 2.3e-05
     DUF5302  5 dlKrKFrEALerKnakaasaaaha 28
                dl+++ rEALe K+ak+a+++++a
  KOO24351.1 41 DLRARAREALEAKKAKKATSSSAA 64
                899************999888765 PP

>> Abhydrolase_3  alpha/beta hydrolase fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.0   1.9e-05     0.067      46     111 ..     183     255 ..     180     308 .. 0.67

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 1.9e-05
                    THHHHHHHHHHHHHHHTH......HHHTETTCEEEEEEETHHHHHHHHHHHHHHHTT---EEEEEEESE...-SS CS
  Abhydrolase_3  46 Paavedalaalrwlaeqa......welgadpsrivlaGdSaGGnlaaavalrardegepkvagqvliyP...vtd 111
                    P+ ++ + a +++l e+a      ++ ++ p+r+vl+G S G+  ++ val++++ +  +++g++ +     v+d
     KOO24351.1 183 PQDLDTCRARMKQLIEEAraiaggAAGQLSPKRLVLCGFSLGAITSLDVALQMKEGE--GPSGVIFMNGapiVVD 255
                    677888999999999999777764466699***********************9974..6777777766556333 PP

>> DLH  Dienelactone hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   4.2e-05      0.15      91     184 ..     207     306 ..     163     309 .. 0.70

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 4.2e-05
         DLH  91 svpevstkkvgvvGfCmGGalalllaaev...pevdaavafYG...lspekeleeaakikapilalfgeeDefipadevekleealkaanvdlelkvYp 183
                 + ++ s+k+++++Gf +G+  +l++a +    +   +++   G   +  e      +++  p+ +  g +D   p+ + e +++ l+++++++  k +p
  KOO24351.1 207 AAGQLSPKRLVLCGFSLGAITSLDVALQMkegEGPSGVIFMNGapiVVDEWAAGLKRHSGLPVHITSGLNDMTLPNYSSEWVRQLLQTNGATVTHKYHP 305
                 3445799***************999977633233445555556776555666677888999********************************999999 PP

         DLH 184 g 184
                 g
  KOO24351.1 306 G 306
                 6 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (327 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       683  (0.0380947); expected 358.6 (0.02)
Passed bias filter:                      611  (0.0340789); expected 358.6 (0.02)
Passed Vit filter:                        57  (0.00317921); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.52u 0.26s 00:00:00.78 Elapsed: 00:00:00.43
# Mc/sec: 2271.30
//
Query:       KOO24352.1  [L=336]
Description: hypothetical protein Ctob_007083 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (336 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       630  (0.0351386); expected 358.6 (0.02)
Passed bias filter:                      316  (0.0176251); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.43u 0.25s 00:00:00.68 Elapsed: 00:00:00.41
# Mc/sec: 2484.27
//
Query:       KOO24353.1  [L=354]
Description: zinc finger protein dhhc domain containing [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.4e-19   68.9   4.0    4.4e-19   68.9   4.0    3.3  3  DHHC      DHHC palmitoyltransferase


Domain annotation for each model (and alignments):
>> DHHC  DHHC palmitoyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.2       0.1   1.9e+03      95     116 ..      21      42 ..       4      52 .. 0.72
   2 ?   -3.8   5.9      0.71   1.3e+04      52     112 ..      61      83 ..      18      91 .. 0.43
   3 !   68.9   4.0   2.5e-23   4.4e-19       4     130 ..     124     298 ..     121     301 .. 0.94

  Alignments for each domain:
  == domain 1  score: -1.1 bits;  conditional E-value: 0.1
        DHHC  95 lsilllvlsllfllllgllllf 116
                   ill+++ l+++++++ l+l 
  KOO24353.1  21 PLILLVAIELVIYIVTTGLVLL 42 
                 4577888888888888877665 PP

  == domain 2  score: -3.8 bits;  conditional E-value: 0.71
        DHHC  52 llfllylllllilalvlllialvklveeekkseflavtllkkllsilllvlsllfllllgl 112
                 +++                                       ++++ll+++++lf+ll ++
  KOO24353.1  61 VTIA--------------------------------------IGVLLLVTYQVLFILLCVS 83 
                 1111......................................2233333333333222222 PP

  == domain 3  score: 68.9 bits;  conditional E-value: 2.5e-23
        DHHC   4 elkfCstcniykpprskHcrvCnrcvlrfDHhCpwlnnciGerNykyFllfllylllllilalvlllialvklveeekkseflavtllkk......... 93 
                 +++fC++   ykp+r+++c + +rcvl++  + + ln+ iG++Nyky+ll ++y +  +++++ ++l  + + ++  +       +   +         
  KOO24353.1 124 SPRFCRKTMAYKPDRAHYCAEVGRCVLQYQTFSVSLNSAIGFYNYKYYLLTVFYGFCTSAWVVGACLPDVMDSWPPFSRLPDSSPPPSVAaavplpiga 222
                 579*********************************************************************99999887666555444489******* PP

        DHHC  94 .......................................llsilllvlsllfllllgllllfhlylilrnlTtiea 130
                                                        ++ +++lv ++l+l+  ++l++ h yli+r++T +e+
  KOO24353.1 223 rslldmgaadlqrriefgvnalvfpsvvdddetsqyivdATMLFTLVAAVLLLIPCLVLCVLHGYLIMRGYTLYEW 298
                 ***************************************999********************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (354 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       619  (0.0345251); expected 358.6 (0.02)
Passed bias filter:                      344  (0.0191868); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.25s 00:00:00.72 Elapsed: 00:00:00.41
# Mc/sec: 2620.92
//
Query:       KOO24354.1  [L=1184]
Description: hypothetical protein Ctob_007093 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.6e-08   35.0   0.0    3.6e-08   33.9   0.0    1.6  1  Helitron_like_N  Helitron helicase-like domain at N-terminus
  ------ inclusion threshold ------
      0.028   14.4   0.0      0.087   12.8   0.0    1.8  1  STI1             STI1 domain


Domain annotation for each model (and alignments):
>> Helitron_like_N  Helitron helicase-like domain at N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.9   0.0     4e-12   3.6e-08      60     188 ..     807     996 ..     748     996 .. 0.73

  Alignments for each domain:
  == domain 1  score: 33.9 bits;  conditional E-value: 4e-12
  Helitron_like_N  60 Lkealeeetedeelkllgk....lvilpssvpgsprymqekrqdlmaivrelgkPdlFiTltcndkwpeikeel.................... 129
                      L++a+++ + +++l ll+k    +++ +++++ + + + +++ +  a  r +g  ++F  +++ d ++++  ++                    
       KOO24354.1 807 LQSAQANPKGEAALVLLRKvlpfISLCGAKQRWGTQERAAEVTKHIAATRFFGLGSVFNSVSPDDVHDPLSIRMsfpttgadefpahapesfyd 900
                      555555553333244444412226778899********************************************88777777666666666665 PP

  Helitron_like_N 130 ...rkkkkaqt.......................aadrpdivarvFhrkleaflkdll.................kegvfGkvsayvytvEfQk 180
                                                        a ++p++++ +Fh++ ++++kdl+                 k g+ G ++ +  + E +k
       KOO24354.1 901 alvA------PdaarqhhgsapgqdmreatlqrlADNNPVATSAIFHKRAKMLIKDLIgidpsargnvrvdgedrKTGIHGICASWKDVTECNK 988
                      5551......044555566677777777778888****************************************999***************** PP

  Helitron_like_N 181 RGlpHaHl 188
                      R + H+H+
       KOO24354.1 989 RKSQHLHG 996
                      *******6 PP

>> STI1  STI1 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0   9.7e-06     0.087      13      35 ..     793     815 ..     789     820 .. 0.90

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 9.7e-06
        STI1  13 etrellsDPefvakleeiqsNPq 35 
                 e r+l+ DP+fv+ l+  q+NP+
  KOO24354.1 793 EFRRLVCDPDFVKLLQSAQANPK 815
                 6789999***************6 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1184 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1002  (0.0558871); expected 358.6 (0.02)
Passed bias filter:                      439  (0.0244855); expected 358.6 (0.02)
Passed Vit filter:                        52  (0.00290033); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.85u 0.24s 00:00:01.08 Elapsed: 00:00:00.41
# Mc/sec: 8584.51
//
Query:       KOO24355.1  [L=208]
Description: ATP-dependent clp protease proteolytic subunit [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.4e-53  181.5   0.0    1.8e-53  181.2   0.0    1.0  1  CLP_protease  Clp protease


Domain annotation for each model (and alignments):
>> CLP_protease  Clp protease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  181.2   0.0   9.9e-58   1.8e-53      14     181 ..       7     177 ..       2     178 .. 0.95

  Alignments for each domain:
  == domain 1  score: 181.2 bits;  conditional E-value: 9.9e-58
                   HTTTEEEEES-BSHHHHHHHHHHHHHHHHH-SSS-EEEEEEE--B-HHHHHHHHHHHHHSSS-EEEEEEEEEETHHHHHHHTS-TTGEEEETTEEEE CS
  CLP_protease  14 lkeriiflgseiddevankiiaqLllLeaedpdkdillyinspGGsvtaglaIydtmqyikpdvsticlGlaaSmgslllaagekgkRfalpnarim 110
                    + r++fl+++idde+a+ +iaqL++Le+e+p  +i l+i s GG+v+ g+aI+d+m+ i+++v+ticlG   Sm+++llaage+g+R+a++n+rim
    KOO24355.1   7 TRGRHVFLTGSIDDESAKVVIAQLMFLEQEAPGVPIRLHISSGGGKVQPGFAIHDVMHSITSPVHTICLGHCESMAAVLLAAGEPGHRAAMANSRIM 103
                   5789********************************************************************************************* PP

                   ES-TE...EEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHTS-HHHHHHHHCSTEEEEHHHHHHHTSSSEE-SS CS
  CLP_protease 111 ihqPl...ggaqgqasdieieaeellkikerlneilakhtgqslekiekdldrdtflsaeeAveyGLideviek 181
                   ihqP    gg++ +a  ++i a  +++ +++l+ +la++tg++l+++   ++ d++++a+eA++ GLid vi+k
    KOO24355.1 104 IHQPRltgGGTSSTARQLAISAASIERSRRKLAVLLAERTGKPLDEVLDLIEYDHVMDAQEALALGLIDVVITK 177
                   ****63325666699********************************************************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (208 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       418  (0.0233142); expected 358.6 (0.02)
Passed bias filter:                      334  (0.018629); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.24s 00:00:00.62 Elapsed: 00:00:00.38
# Mc/sec: 1661.89
//
Query:       KOO24356.1  [L=70]
Description: hypothetical protein Ctob_007087 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    8.9e-06   25.3   0.5    1.7e-05   24.3   0.5    1.6  2  Tom7      TOM7 family


Domain annotation for each model (and alignments):
>> Tom7  TOM7 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.5   0.0     0.055   9.8e+02       6      18 ..      22      34 ..      21      35 .. 0.87
   2 !   24.3   0.5   9.7e-10   1.7e-05       7      41 .]      30      67 ..      25      67 .. 0.79

  Alignments for each domain:
  == domain 1  score: -0.5 bits;  conditional E-value: 0.055
        Tom7  6 kvidvsktaiHyG 18
                k+ dv  t++ yG
  KOO24356.1 22 KLYDVYETVLPYG 34
                7889999*99998 PP

  == domain 2  score: 24.3 bits;  conditional E-value: 9.7e-10
        Tom7  7 vidvsktaiHyGfiPlvlyLGfskseP...kpslisLL 41
                v+ +  ta+ y fiP+v+ +G+++++    k+ + +LL
  KOO24356.1 30 VLPYGVTAFYYSFIPIVVLIGYRNAKTlepKLRFWDLL 67
                6667779***************9986553377777776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (70 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       333  (0.0185733); expected 358.6 (0.02)
Passed bias filter:                      302  (0.0168442); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.31u 0.24s 00:00:00.55 Elapsed: 00:00:00.36
# Mc/sec: 587.60
//
Query:       KOO24357.1  [L=370]
Description: glutamate binding protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.3e-33  114.4  38.8    6.3e-33  114.4  38.8    1.7  2  Bax1-I    Inhibitor of apoptosis-promoting Bax1


Domain annotation for each model (and alignments):
>> Bax1-I  Inhibitor of apoptosis-promoting Bax1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.1     0.083   1.5e+03      73      88 ..      71      86 ..      61      97 .. 0.50
   2 !  114.4  38.8   3.5e-37   6.3e-33       2     206 ..     143     361 ..     142     362 .. 0.79

  Alignments for each domain:
  == domain 1  score: -1.2 bits;  conditional E-value: 0.083
      Bax1-I 73 lllftlleGlslspil 88
                ++l++l+ + +l +i 
  KOO24357.1 71 YFLLALIVAWVLVMIA 86
                3333333333333333 PP

  == domain 2  score: 114.4 bits;  conditional E-value: 3.5e-37
      Bax1-I   2 aflrkvYgllalgllltalvaavvlsspa............qlflslhivlflvvilaplalvflslsaarlkkkssalalallllftlleGlslspil 88 
                 af+rkvY++la++l+ t+++ ++++  ++             +++ ++++l+l+  ++++al++l+++   ++k++ +  +++l +ft++++l +++i+
  KOO24357.1 143 AFIRKVYAILATQLVATVAIVVGLIYASFykgnehvltafgVFITGPGYYLSLL--FLIIALFVLCCLMCVRDKYPEN--MICLAVFTACISLEVGIIC 237
                 79*************996555555554445798777776544444444444444..3334444333344557899999..******************* PP

      Bax1-I  89 lvyt....gaiilqaflltaaifgglslyalttkrdlsglggflfagligliiaslvn.lFlp....ssalelaisylgvllfsglilyDtqkiierag 178
                 ++y     g+ +l af+ltaa+f  l++++++ + d+++lg++l++gl++l++ s +  + ++    s   +la  ++g+++f+g+i+yDt +i+  + 
  KOO24357.1 238 VLYYdagfGSDLLLAFVLTAATFLLLTVFTIVSRIDFTFLGPLLCIGLFVLLFWSCILsICMAfggySASWSLAWVIVGMIIFVGFIIYDTYMIVT-RL 335
                 ***99********************************************9965555542333344575556666689**************99997.68 PP

      Bax1-I 179 eygeedailaalsLyldfinlFlslLri 206
                  ++++  + aa++Lyld in+F+ +L+ 
  KOO24357.1 336 GVDDY--VIAAIELYLDMINMFMLILSC 361
                 99999..******************985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (370 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1135  (0.0633053); expected 358.6 (0.02)
Passed bias filter:                      380  (0.0211947); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.51u 0.24s 00:00:00.75 Elapsed: 00:00:00.39
# Mc/sec: 2860.78
//
Query:       KOO24358.1  [L=319]
Description: serine threonine-protein phosphatase pp1-alpha catalytic subunit isoform 1 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    9.1e-38  130.8   0.1    1.2e-37  130.4   0.1    1.1  1  Metallophos  Calcineurin-like phosphoesterase
      0.001   19.4   0.0     0.0018   18.7   0.0    1.4  1  STPPase_N    Serine-threonine protein phosphatase N-terminal 


Domain annotation for each model (and alignments):
>> Metallophos  Calcineurin-like phosphoesterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  130.4   0.1   1.3e-41   1.2e-37       5     201 ..      60     248 ..      57     251 .. 0.93

  Alignments for each domain:
  == domain 1  score: 130.4 bits;  conditional E-value: 1.3e-41
                  EEESBTBTTCCTHHHHHHHHH..HHHHHHTTESEEEEESTSSSSSHHHHHHHHH.HHHHHHHTSEEEEEC-TTS........CHHHHHHHHHHHHHHH CS
  Metallophos   5 vigDlHlalgggqlddllkll..ddllreekpdlvllaGDlvdrgdlekellel.laalvkypipvylllGNHe........gfeeellnkygylgif 91 
                  ++gD+H     gq+ dll+l+  +  +++   +l+l  GD+vdrg+   e++ l +a +vkyp +++ll+GNHe        gf++e++++y      
   KOO24358.1  60 IVGDIH-----GQYVDLLRLFefKGMPPN-ASYLFL--GDYVDRGPSGLECMFLlMALKVKYPEHIHLLRGNHEcaainriyGFYDECKRRYS----- 144
                  79****.....**********44444666.889999..*******66666666669***********************************99..... PP

                  HHHHEHHHCEEETSEEEEEETTEEEEEEEESE.CEEETHHHHHHHHHHHSCHHHHCC...HHHHHHHHHHTTCSEEEEEESSESSCSSSCSCCHHHHH CS
  Metallophos  92 sepwrsdaevfnnlplaslgsgslkvlllhGg.spellvsldklgslnleleapepg...dewlkdlekrekadwvivlgHsplyrgsgylfgdeale 185
                   ++w+s+++ fn+lpla+ +++  +++++hGg sp+  +s+d+l++++++ e+p+ g   d +++d       + + + g+  + rg + +fg ++++
   KOO24358.1 145 IKLWKSFQDLFNALPLAAVIEQ--RIFCVHGGlSPDM-ESPDDLKRFKRPVEVPDTGllcDTLWSD-------PDKDITGWAENDRGVSFTFGADVVA 232
                  99********************..********98888.****************************.......************************* PP

                  HHHHHTTESEEEEESS CS
  Metallophos 186 dllkkygvdlvisGHt 201
                  ++l+++++dl++++H+
   KOO24358.1 233 KFLERNDLDLIVRAHQ 248
                  ***************8 PP

>> STPPase_N  Serine-threonine protein phosphatase N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.7   0.0     2e-07    0.0018       1      35 [.       3      37 ..       3      40 .. 0.91

  Alignments for each domain:
  == domain 1  score: 18.7 bits;  conditional E-value: 2e-07
   STPPase_N  1 vDdiIerLlevrgkpggkkvqLseaEIrqlCakar 35
                vD+iIerL +v+ +++g+ vqL e E   l+a+a 
  KOO24358.1  3 VDSIIERLCAVKAQRAGTAVQLAEREAAVLVAAAE 37
                8************8899*********999988885 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (319 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       347  (0.0193541); expected 358.6 (0.02)
Passed bias filter:                      331  (0.0184617); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.42u 0.27s 00:00:00.69 Elapsed: 00:00:00.41
# Mc/sec: 2308.54
//
Query:       KOO24359.1  [L=83]
Description: hypothetical protein Ctob_010949 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (83 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       666  (0.0371465); expected 358.6 (0.02)
Passed bias filter:                      412  (0.0229795); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.23s 00:00:00.57 Elapsed: 00:00:00.38
# Mc/sec: 659.03
//
Query:       KOO24360.1  [L=385]
Description: fatty acid desaturase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.4e-23   84.0  12.2    1.4e-23   84.0  12.2    1.6  2  FA_desaturase  Fatty acid desaturase


Domain annotation for each model (and alignments):
>> FA_desaturase  Fatty acid desaturase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.3   0.3     0.014   2.6e+02     135     166 ..      39      68 ..      12      73 .. 0.56
   2 !   84.0  12.2     8e-28   1.4e-23       8     253 ..      57     325 ..      49     326 .. 0.78

  Alignments for each domain:
  == domain 1  score: 1.3 bits;  conditional E-value: 0.014
  FA_desaturase 135 wrllawlllllawlglwlalllllglalllwl 166
                      +++wl+ l++w+ + +++ l+l++a   wl
     KOO24360.1  39 GAFVLWLVCLVGWVQASIPATLVLPFA--QWL 68 
                    456666666666666666655555554..444 PP

  == domain 2  score: 84.0 bits;  conditional E-value: 8e-28
  FA_desaturase   8 la.lllglfllgitg.slaHeaaHgalfkkrklnrwlndllgallglplgisysawrisH.lrHHaytngpdeDpdlaplal.........srfeg 91 
                    +a l+l +  +++ +   +Hea+H +l+    +n+ +n++  al+glp+ +++++w  +H l+HH  tn+++ D+dl++l++             +
     KOO24360.1  57 PAtLVLPFA-QWLLFsPTVHEASHSTLS----TNPAVNKAA-ALCGLPFIYNPYIWWPQHiLSHHQFTNDDALDVDLHHLRPsrlhpgcetDATAS 146
                    333666666.444466************....777776666.55************************************99*9999998844444 PP

  FA_desaturase  92 lfryllrlllgllvlgwllalvlglwlrrlarrrapsksrrrkwrllawlllllaw..lglwlalllllglall........lwlvplllllflla 177
                     f+++++ ++ +l++++l+ l     l++    r+ ++ +  +   l+   +l+++  +g++l++ +ll l++         lwl+p+++ +++++
     KOO24360.1 147 GFNFIFKGYFSTLGMAVLWPLR---NLQQKSTGRWYANLITPTPAALEPTEFLFSLlpVGFVLVWPWLLVLSGQvnalegflLWLYPWAVTGAIWT 239
                    4566777777777777444444...5555555666666665555555555555543335555555555544444778******************* PP

  FA_desaturase 178 lvlnyveHyg...........gdwgerqvetsasirsaswllnlltgnlnyHieHHlfPgvpwyrLpelhrrlrellpehglpyrsr 253
                    ++ + v+H +           +d+ + qve   ++++ s l+  lt  ln+++ HH +P+v  +++  l+++  +++++hg++ ++r
     KOO24360.1 240 VM-TQVSHVQedcqqpptgapDDYFRWQVESAVDYSIGSELVPKLTATLNLQSMHHVMPSVCGCHFASLYEEYAQICERHGVRLNTR 325
                    **.****************97777777777777777**********************************************98875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (385 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       442  (0.0246528); expected 358.6 (0.02)
Passed bias filter:                      329  (0.0183502); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.27s 00:00:00.70 Elapsed: 00:00:00.39
# Mc/sec: 2968.64
//
Query:       KOO24361.1  [L=625]
Description: glycosyltransferase family 77 protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.3e-35  121.6   0.0    8.1e-35  120.7   0.0    1.4  1  Nucleotid_trans  Nucleotide-diphospho-sugar transferase


Domain annotation for each model (and alignments):
>> Nucleotid_trans  Nucleotide-diphospho-sugar transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  120.7   0.0   4.5e-39   8.1e-35       7     211 ..      75     345 ..      73     346 .. 0.89

  Alignments for each domain:
  == domain 1  score: 120.7 bits;  conditional E-value: 4.5e-39
  Nucleotid_trans   7 lvvAlDeealerckelgvpvlyltsk.gkdsakkdeefksktykkmswrkvrlllellklGynvllsDvDvvWlrnpfpll............. 86 
                      +v+A+De+a++++ +  vpv+      +  + ++ +++ s ++k++  +++  + +l+ lGy+vl sD+D+vWlr+p+p+l             
       KOO24361.1  75 VVGAVDEAAFRLLVAEDVPVYLTPLArERYFMDGSNSHSSSSWKRFASMRTGEVARLVHLGYDVLHSDTDIVWLRDPTPYLmctpaaragefge 168
                      8******************66666668778888999********************************************************** PP

  Nucleotid_trans  87 .................kyedaD...vlvssDsldgttadelknli......NsGfffvrateatkallkkwaeelasesglw.......Dqdv 147
                                       + + +D   ++vssD+  +  a e+++ +      NsG+  +rat+++ a+++ w++++a+ s  +       Dq+v
       KOO24361.1 169 gmrarsfhasrsamlmwRARHNDflgLQVSSDNMGPGRAVERRADYhaggtfNSGMLLFRATRSGRAFVSAWHRNVAAPSRGSrferlssDQQV 262
                      **99999999988888844555522267999999999999999999********************************988788********** PP

  Nucleotid_trans 148 fnlllregaake...................sglkvrvLdtalfvngkgyfvqvrdeeevktkkkpvavhanycsgke...dKlkr 211
                      fn+++r++  ++                   ++l++++L+  lf+ng+gyfvq+ + +       p+avha+y+ +++   +K++r
       KOO24361.1 263 FNNMVRRERQWPgvggastswlidrmhpdwqGKLTLGALPLPLFANGHGYFVQSAHTRLGV---APFAVHATYTLDRHdglAKRQR 345
                      ********9999*****************************************44444444...5**********66633367666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (625 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       414  (0.0230911); expected 358.6 (0.02)
Passed bias filter:                      339  (0.0189079); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.53u 0.23s 00:00:00.76 Elapsed: 00:00:00.39
# Mc/sec: 4801.44
//
Query:       KOO24362.1  [L=214]
Description: mannosyl-oligosaccharide -alpha-mannosidase ic [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.1e-26   93.8   0.0    1.8e-24   86.5   0.0    2.0  1  Glyco_hydro_47  Glycosyl hydrolase family 47


Domain annotation for each model (and alignments):
>> Glyco_hydro_47  Glycosyl hydrolase family 47
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   86.5   0.0     1e-28   1.8e-24     301     457 ..       7     145 ..       2     146 .. 0.84

  Alignments for each domain:
  == domain 1  score: 86.5 bits;  conditional E-value: 1e-28
                     HHHHHHHHHHHHHHHHHHHTSTTS---SEEEE-SS.....S-ECTSSSSEEE-.GGG--B----HHHHHHHHHHHHH--THHHHHHHHHHHHHHH CS
  Glyco_hydro_47 301 eedlelAkkltegcvkayeatktglmPEifevkpcesaeecewneekkdealkriedrkyllRPEaiESlfylYritgdekyrevgwemfealek 395
                     + ++e+A++l  +c+++ye+ +tgl+PE++ +++ +s +       + +++ k   d++y            +Yr+     +re g ++++a+e 
      KOO24362.1   7 TAEWEIARELLSTCTELYERQPTGLGPERLTFSTAASVRAA-----RIEWRRKYADDESYRD--------LEAYRL----PLRERGLRVLHAIEC 84 
                     5789*****************************76543333.....2233333233444433........347998....599************ PP

                     HCEE.TTEE--ECETTSSS-EE-S-B-HHHHHTHHHHHHHHC-S-TTT-TTTEEE-TTS-EEE CS
  Glyco_hydro_47 396 atkt.esgysaledVtkeepekeDemeSFwlaEtlKYlYLlFsdedvlsldeyVfnTeAHplk 457
                     +++t + gy++l+     +p+ +++ eSF++aEtlKYl LlFs+++ lsl+  V++TeAH+l+
      KOO24362.1  85 HCRTsDGGYAGLSSTS--RPTLSNRLESFFFAETLKYLHLLFSEPSALSLETHVLTTEAHVLP 145
                     ****677******999..99*****************************************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (214 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       248  (0.0138323); expected 358.6 (0.02)
Passed bias filter:                      223  (0.0124379); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.24s 00:00:00.64 Elapsed: 00:00:00.39
# Mc/sec: 1632.92
//
Query:       KOO24363.1  [L=223]
Description: hypothetical protein Ctob_010945 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (223 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       317  (0.0176809); expected 358.6 (0.02)
Passed bias filter:                      237  (0.0132188); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.24s 00:00:00.62 Elapsed: 00:00:00.38
# Mc/sec: 1746.16
//
Query:       KOO24364.1  [L=779]
Description: integrator complex subunit 11 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    4.4e-24   84.9   0.0    9.2e-24   83.9   0.0    1.6  1  Beta-Casp       Beta-Casp domain
    4.1e-14   52.4   0.0    8.3e-14   51.5   0.0    1.5  1  Lactamase_B_6   Metallo-beta-lactamase superfamily domain
    9.8e-14   51.0   0.0    3.5e-13   49.3   0.0    2.0  2  RMMBL           Zn-dependent metallo-hydrolase RNA specificit
    3.4e-12   46.6   1.4    7.5e-12   45.5   1.4    1.6  1  EF-hand_7       EF-hand domain pair
    5.8e-11   42.8   2.6    5.8e-10   39.5   2.6    2.4  1  Lactamase_B     Metallo-beta-lactamase superfamily
      2e-10   39.4   6.3    0.00011   21.4   0.9    3.1  3  EF-hand_1       EF hand
    2.1e-09   37.1   4.5    1.4e-07   31.3   0.6    3.2  3  EF-hand_8       EF-hand domain pair
    7.8e-09   34.8   4.6    7.5e-05   22.4   0.3    3.2  3  EF-hand_6       EF-hand domain
    4.2e-08   33.0   2.1    7.1e-08   32.2   0.4    2.1  2  Lactamase_B_2   Beta-lactamase superfamily domain
    5.8e-06   25.6   8.5     0.0032   16.9   0.4    3.3  3  EF-hand_5       EF hand
      0.007   16.3   0.0      0.027   14.4   0.0    2.0  2  Lactamase_B_3   Beta-lactamase superfamily domain
  ------ inclusion threshold ------
      0.023   14.6   1.6        4.7    7.2   0.1    2.4  2  EF-hand_4       Cytoskeletal-regulatory complex EF hand
      0.084   12.3   0.1       0.15   11.5   0.1    1.3  1  GPCR_chapero_1  GPCR-chaperone


Domain annotation for each model (and alignments):
>> Beta-Casp  Beta-Casp domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   83.9   0.0   6.7e-27   9.2e-24       1     110 []     248     368 ..     248     368 .. 0.84

  Alignments for each domain:
  == domain 1  score: 83.9 bits;  conditional E-value: 6.7e-27
                 HHHHHHHH..HCTT..TTS-S-EEEEE-HHHHHHHHHGGGGGGE-SHH....HHH.H...HH...................HS-SSEEEEES-TTSSSS CS
   Beta-Casp   1 aqellylLeelwkekkledlklpiyldsplaskatevYkeyaeveakslewmesk.ke.eln...................sskgpkvilassgmlegG 78 
                 aqell+lLe +w++  l  l++piy++  +a++at +Yk ya+       w++   k+ e +                   s +gp+v++a+sgm+++G
  KOO24364.1 248 AQELLMLLEMYWDR--L-GLSVPIYVAAGMAQHATLFYKLYAS-------WTSTCvKDsERApgynpfafrhvrpferallSAPGPCVLFATSGMMTAG 336
                 7***********98..5.5569*******************55.......3333322212224556788888899999999889*************** PP

                 HHHHHHHHHTTSTTSEEEESS---TTSHHHHH CS
   Beta-Casp  79 rsrellkklledprntvilvgyqaegTlgrkl 110
                 ++ e+++++++d++n+v+++ ++++gTlg++l
  KOO24364.1 337 MALEAFRHWAGDAKNLVLFPTFCVRGTLGHTL 368
                 *****************************976 PP

>> Lactamase_B_6  Metallo-beta-lactamase superfamily domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.5   0.0     6e-17   8.3e-14       3     175 ..      24     195 ..      22     208 .. 0.88

  Alignments for each domain:
  == domain 1  score: 51.5 bits;  conditional E-value: 6e-17
  Lactamase_B_6   3 eldnvkiLlDvGwdeskvslesalkelek.......viptvdliLLshatlehlGayallyakfksklllnipvyatlpvvkLGrvslldlyaskg 91 
                    +l + +++ D+G++   +++++++ ++++         + +d ++++h  l+h Ga+++l      kl+ + p+y t p+++++ ++l d+ +  +
     KOO24364.1  24 TLGGRRVMFDCGMHMG-YHDHRCFPDWQQlgahrgsLTSAIDCVVITHFHLDHCGALPFLTE----KLGYDGPIYMTRPTAAMAAILLKDSLNVLS 114
                    5667899*******86.66789**9999955443333599*****************99886....47899*********************9999 PP

  Lactamase_B_6  92 llgpedseeleledideafdkiktlkYsQklelkskldgltitaynaGhtlGGtiWkiskesekivYavdwnhakeshLngaal 175
                    +  +    + +  d+d++ +k++ +    ++++    d+l +  + aGh++G+ + + +   ++++Y  d+n   ++hL +a++
     KOO24364.1 115 SARKGGGPSYSARDVDACLSKVRFVTLGETIHVD---DELRLCTHYAGHVVGAVMVSAECLGHRVMYTGDFNTVADRHLGAAQV 195
                    9999999999***********9999999999988...589******************999******************88765 PP

>> RMMBL  Zn-dependent metallo-hydrolase RNA specificity domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.3   0.0   2.5e-16   3.5e-13       3      60 ..     391     448 ..     389     450 .. 0.92
   2 ?   -3.4   0.0         7   9.7e+03      10      28 ..     666     684 ..     658     687 .. 0.72

  Alignments for each domain:
  == domain 1  score: 49.3 bits;  conditional E-value: 2.5e-16
       RMMBL   3 pvkarieeidfSgHadknellelirklkprnvilvHGeeeatsalarllkeeegidvf 60 
                  v + +++i+fS+Had  ++l li++l+p  v+lvHGe+ +++ l+ + ++ +g+ ++
  KOO24364.1 391 TVACTVKQISFSAHADAKGILGLISTLQPAAVVLVHGEQAKMAYLKVRVAKLFGVPCH 448
                 799*******************************************999777788776 PP

  == domain 2  score: -3.4 bits;  conditional E-value: 7
       RMMBL  10 eidfSgHadknellelirk 28 
                 + d Sg  d++e  ++ir+
  KOO24364.1 666 DDDASGEIDFEEFAKMIRG 684
                 4457888999999999987 PP

>> EF-hand_7  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.5   1.4   5.4e-15   7.5e-12       1      71 []     619     683 ..     619     683 .. 0.96

  Alignments for each domain:
  == domain 1  score: 45.5 bits;  conditional E-value: 5.4e-15
   EF-hand_7   1 eeklkeaFkelDtdgdgyldkeellrllrkifqgagegsklsdeelellfkefDtdkdGvisfdEFlklyr 71 
                 e+kl+++F+++D d+ g +dk+el+ +l+      g g+ l++ee++++++  D d +G+i+f+EF k++r
  KOO24364.1 619 EDKLRDIFDKIDLDHGGTIDKNELQVALT------GAGKLLTSEEIDAMMRATDDDASGEIDFEEFAKMIR 683
                 579**********************9999......********************************9975 PP

>> Lactamase_B  Metallo-beta-lactamase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.5   2.6   4.2e-13   5.8e-10       5     162 ..      17     193 ..      13     211 .. 0.82

  Alignments for each domain:
  == domain 1  score: 39.5 bits;  conditional E-value: 4.2e-13
                  SSEEEEEEETTCEEEES--SCHHHHHHHH......HHHHHTSGGGGEEEEE-SBSSHHHHTTGGGCTTHHCCEETCCEHHHHCCHCHHHHHHHHHCCH CS
  Lactamase_B   5 pvnsyliegdggviLiDtGtsteaaraal......elaalglkpkdvdavilTHlHlDHiGglgglveatdvpvgavaeeapalfmeeaddaasrkgl 96 
                  + ++++++ +g+ +++D+G++  + + +       + a +g     +d v++TH+HlDH+G+l+ l+e+ ++   ++     a     + +++    +
   KOO24364.1  17 GRSCVVVTLGGRRVMFDCGMHMGYHDHRCfpdwqqLGAHRGSLTSAIDCVVITHFHLDHCGALPFLTEKLGYDGPIYMTRPTAAMAAILLKDSLNVLS 114
                  578***********************988999**666666666789***********************98866666666666555555555555444 PP

                  H.............TTCHCGCCEEEEETTTEECCCTEEEEEHECTTSTSCCEEEEEETTCCEEEECTTTSSHHCCCCCC CS
  Lactamase_B  97 l.............lagvsadkpdvdeeeldgnaggrralyvtggpghghghgvveygggkvlftGDallagetgridl 162
                                  +   +   v++ e+   +++ r+  ++ g++ g++ ++ e+ g +v +tGD+  ++++ ++  
   KOO24364.1 115 SarkgggpsysardVDACLSKVRFVTLGETIHVDDELRLCTHYAGHVVGAVMVSAECLGHRVMYTGDFNTVADRHLGAA 193
                  466********987555666677788888888888999999**************************998888877766 PP

>> EF-hand_1  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.5   0.1   3.5e-07   0.00048       2      27 ..     622     647 ..     621     649 .. 0.93
   2 !   21.4   0.9   8.2e-08   0.00011       1      27 [.     657     683 ..     657     685 .. 0.94
   3 ?   -1.1   0.0       1.3   1.8e+03      15      27 ..     754     766 ..     752     767 .. 0.86

  Alignments for each domain:
  == domain 1  score: 19.5 bits;  conditional E-value: 3.5e-07
                 HHHHHHHHTTTSSSEEEHHHHHHHHH CS
   EF-hand_1   2 lkeiFrefDkDgdGkIdfeEfkellk 27 
                 l++iF+++D D+ G+Id++E++ +l+
  KOO24364.1 622 LRDIFDKIDLDHGGTIDKNELQVALT 647
                 89********************9986 PP

  == domain 2  score: 21.4 bits;  conditional E-value: 8.2e-08
                 HHHHHHHHHTTTSSSEEEHHHHHHHHH CS
   EF-hand_1   1 elkeiFrefDkDgdGkIdfeEfkellk 27 
                 e++ ++r  D D +G IdfeEf ++++
  KOO24364.1 657 EIDAMMRATDDDASGEIDFEEFAKMIR 683
                 79**********************987 PP

  == domain 3  score: -1.1 bits;  conditional E-value: 1.3
                 SEEEHHHHHHHHH CS
   EF-hand_1  15 GkIdfeEfkellk 27 
                 G I++ Ef++ ++
  KOO24364.1 754 GEISKIEFRTGVR 766
                 99*******9876 PP

>> EF-hand_8  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.1   0.3   2.3e-05     0.032      23      48 ..     617     642 ..     603     647 .. 0.86
   2 !   31.3   0.6     1e-10   1.4e-07       1      51 [.     633     681 ..     633     683 .. 0.93
   3 ?   -0.3   0.0      0.73     1e+03      30      50 ..     743     763 ..     740     770 .. 0.74

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 2.3e-05
   EF-hand_8  23 lseeevdilfrefDtdgdGkisfeEF 48 
                  se++++++f+++D+d+ G+i+++E 
  KOO24364.1 617 ASEDKLRDIFDKIDLDHGGTIDKNEL 642
                 599*********************97 PP

  == domain 2  score: 31.3 bits;  conditional E-value: 1e-10
   EF-hand_8   1 ekgkItreelrril.rilglkkglseeevdilfrefDtdgdGkisfeEFcvl 51 
                 ++g I++ el+ +l  + g+   l+ ee+d+++r+ D d +G i+feEF  +
  KOO24364.1 633 HGGTIDKNELQVALtGA-GKL--LTSEEIDAMMRATDDDASGEIDFEEFAKM 681
                 689***********655.999..**************************976 PP

  == domain 3  score: -0.3 bits;  conditional E-value: 0.73
   EF-hand_8  30 ilfrefDtdgdGkisfeEFcv 50 
                 +l+re  ++ +G is+ EF  
  KOO24364.1 743 DLVREWARKTKGEISKIEFRT 763
                 677777778888888888864 PP

>> EF-hand_6  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.4   0.3   5.4e-08   7.5e-05       1      27 [.     621     647 ..     621     664 .. 0.94
   2 !   12.8   0.2   6.5e-05      0.09       7      27 ..     663     683 ..     657     686 .. 0.86
   3 ?   -2.1   0.0       3.8   5.2e+03      15      27 ..     754     766 ..     751     769 .. 0.84

  Alignments for each domain:
  == domain 1  score: 22.4 bits;  conditional E-value: 5.4e-08
   EF-hand_6   1 elreaFklfDkdgdGkidaeElrkalr 27 
                 +lr++F+++D d+ G+id++El+ al+
  KOO24364.1 621 KLRDIFDKIDLDHGGTIDKNELQVALT 647
                 69*********************9998 PP

  == domain 2  score: 12.8 bits;  conditional E-value: 6.5e-05
   EF-hand_6   7 klfDkdgdGkidaeElrkalr 27 
                 ++ D d +G+id+eE+ k++r
  KOO24364.1 663 RATDDDASGEIDFEEFAKMIR 683
                 5679***************98 PP

  == domain 3  score: -2.1 bits;  conditional E-value: 3.8
   EF-hand_6  15 GkidaeElrkalr 27 
                 G+i++ E+r   r
  KOO24364.1 754 GEISKIEFRTGVR 766
                 99******98776 PP

>> Lactamase_B_2  Beta-lactamase superfamily domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.2   0.4   5.2e-11   7.1e-08       1     149 [.      28     188 ..      28     236 .. 0.70
   2 ?   -0.8   0.1      0.67   9.2e+02     153     200 ..     368     426 ..     330     426 .. 0.83

  Alignments for each domain:
  == domain 1  score: 32.2 bits;  conditional E-value: 5.2e-11
                    SEEEES--TT...........HHHHHTCGGS--SSS--..SEEEEE-SS--HHHHGGGGCCCCC--EEEEEEEEHHHHH....HCCTTCGHHHCHT CS
  Lactamase_B_2   1 rriLiDagpd...........lrqqalralqPvelrdelppidaVllthaHyDHlaglltlrelrpkklplyapkgvla....vleanfvylalee 81 
                    rr+ +D+g             + qq l a+ +++ +   ++id V++th H DH+  l++l e  + + p+y ++ ++a     l++++  l + +
     KOO24364.1  28 RRVMFDCGMHmgyhdhrcfpdW-QQ-LGAH-RGS-LT--SAIDCVVITHFHLDHCGALPFLTEKLGYDGPIYMTRPTAAmaaiLLKDSLNVLSSAR 117
                    6777777777665555544323.44.4554.322.33..49**********************555568999998888867774555555555555 PP

                    T.............TTEEEEEE-TTSEEEECSTTEEEEEEEE-EE--CTCCE-TTTSEEEEEECTTEEEEEESS-S---HH CS
  Lactamase_B_2  82 e.............pavnvheldwgesfelgdggleitatparhksgrrldrnagdtlGlriegggkrvyyigDtgyipee 149
                    +             +  +v+ +++ge+++++d +l++ ++ a h  g          + +  e  g+rv+y+gD +++ ++
     KOO24364.1 118 KgggpsysardvdaCLSKVRFVTLGETIHVDD-ELRLCTHYAGHVVGA---------VMVSAECLGHRVMYTGDFNTVADR 188
                    566655555557788888888889******87.466666666666665.........4444445689999*****999854 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 0.67
                    HHCT-SEEEEE-S-SSTTHHHH...........HHT---STSHHHHCTTSSSSEEEEES CS
  Lactamase_B_2 153 rlggadllllditayeddemir...........hmgHltpeeaveaaadlgakrlvliH 200
                    +l+ga+ +++d+ a e+ + +r              H++ ++ + ++  l+++ +vl+H
     KOO24364.1 368 LLHGAKEVVVDAPAGEEPSTRRltvactvkqisFSAHADAKGILGLISTLQPAAVVLVH 426
                    67777788888777777776667788877777677899999999999999999999999 PP

>> EF-hand_5  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   0.4   2.3e-06    0.0032       1      22 [.     622     643 ..     622     646 .. 0.93
   2 !   11.2   0.5   0.00014       0.2       1      24 [.     658     681 ..     658     682 .. 0.88
   3 ?    1.0   0.1      0.25   3.5e+02      14      23 ..     754     763 ..     753     765 .. 0.88

  Alignments for each domain:
  == domain 1  score: 16.9 bits;  conditional E-value: 2.3e-06
                 HHHHHHHH-SS-SSCE-HHHHH CS
   EF-hand_5   1 lkdtFqaiDlNgDGkIskeELk 22 
                 l+d F++iDl++ G+I+k EL+
  KOO24364.1 622 LRDIFDKIDLDHGGTIDKNELQ 643
                 789******************8 PP

  == domain 2  score: 11.2 bits;  conditional E-value: 0.00014
                 HHHHHHHH-SS-SSCE-HHHHHHH CS
   EF-hand_5   1 lkdtFqaiDlNgDGkIskeELktl 24 
                 ++++ +a D + +G I++eE+ ++
  KOO24364.1 658 IDAMMRATDDDASGEIDFEEFAKM 681
                 56788999*************986 PP

  == domain 3  score: 1.0 bits;  conditional E-value: 0.25
                 SCE-HHHHHH CS
   EF-hand_5  14 GkIskeELkt 23 
                 G Isk E++t
  KOO24364.1 754 GEISKIEFRT 763
                 99******98 PP

>> Lactamase_B_3  Beta-lactamase superfamily domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.4   0.0     2e-05     0.027       6      52 ..      17      78 ..      15     187 .. 0.88
   2 ?   -1.6   0.0       1.6   2.3e+03     143     163 .]     406     426 ..     375     462 .. 0.67

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 2e-05
  Lactamase_B_3  6 ghnsflletagarilvDPfkanlgyeppa................eeaDlvlisqaledHahl 52
                   g ++++++ +g r++ D +  ++gy   +                  +D+v+i++ + dH+ +
     KOO24364.1 17 GRSCVVVTLGGRRVMFDCGM-HMGYHDHRcfpdwqqlgahrgsltSAIDCVVITHFHLDHCGA 78
                   89***************884.555555556666677777777788***************965 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 1.6
  Lactamase_B_3 143 gqeealelakrLkpklvlPmh 163
                    +++ +l l++ L+p  v+ +h
     KOO24364.1 406 DAKGILGLISTLQPAAVVLVH 426
                    445555555555555555444 PP

>> EF-hand_4  Cytoskeletal-regulatory complex EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.1   0.1    0.0077        11      39      69 ..     616     646 ..     606     649 .. 0.86
   2 ?    7.2   0.1    0.0034       4.7      40      70 ..     653     683 ..     647     698 .. 0.87

  Alignments for each domain:
  == domain 1  score: 6.1 bits;  conditional E-value: 0.0077
   EF-hand_4  39 kleedklekiwdladidedgkldfeefciam 69 
                   +edkl  i+d  d+d+ g++d +e+ +a+
  KOO24364.1 616 LASEDKLRDIFDKIDLDHGGTIDKNELQVAL 646
                 5579**********************99886 PP

  == domain 2  score: 7.2 bits;  conditional E-value: 0.0034
   EF-hand_4  40 leedklekiwdladidedgkldfeefciamr 70 
                 l++++++ +   +d d  g++dfeef+ ++r
  KOO24364.1 653 LTSEEIDAMMRATDDDASGEIDFEEFAKMIR 683
                 6678888899999*************98777 PP

>> GPCR_chapero_1  GPCR-chaperone
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.1   0.00011      0.15     161     234 ..     473     550 ..     417     556 .. 0.69

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.00011
  GPCR_chapero_1 161 keeeeeskkknpkklta.s.e..lkkkdigrpkeekekkkklkatlwLtedfPlsleellpildilankvkafrkLre 234
                       +e+ s++++++  ta + +   ++k+   + + k     +k+    + +  + l el p+ dila   + +++ re
      KOO24364.1 473 GAQEKLSSSRKKTMSTAeKlDllDEEKKAKAKPKAKAAAPVFKPPAEVSLESSVDLAELAPLPDILAPVEALISRFRE 550
                     1222222223333333333335233456888889999999************************************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (779 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       596  (0.0332422); expected 358.6 (0.02)
Passed bias filter:                      485  (0.0270511); expected 358.6 (0.02)
Passed Vit filter:                        47  (0.00262145); expected 17.9 (0.001)
Passed Fwd filter:                        13  (0.000725082); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 0.67u 0.26s 00:00:00.93 Elapsed: 00:00:00.43
# Mc/sec: 5470.84
//
Query:       KOO24365.1  [L=215]
Description: hypothetical protein Ctob_001000 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (215 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       385  (0.0214736); expected 358.6 (0.02)
Passed bias filter:                      274  (0.0152825); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.42u 0.24s 00:00:00.65 Elapsed: 00:00:00.52
# Mc/sec: 1248.84
//
Query:       KOO24366.1  [L=270]
Description: protein kinase like protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    8.7e-30  104.0   0.0    1.4e-29  103.3   0.0    1.3  1  Pkinase         Protein kinase domain
    1.7e-28   99.6   0.0    4.4e-17   62.2   0.0    2.1  2  Pkinase_Tyr     Protein tyrosine kinase
    2.6e-05   23.7   0.1    3.4e-05   23.3   0.1    1.1  1  Kinase-like     Kinase-like
     0.0072   16.3   0.1      0.037   13.9   0.0    2.0  2  APH             Phosphotransferase enzyme family
  ------ inclusion threshold ------
      0.024   14.0   0.0      0.034   13.5   0.0    1.2  1  Kdo             Lipopolysaccharide kinase (Kdo/WaaP) family
       0.14   10.9   0.0       0.19   10.4   0.0    1.1  1  Pkinase_fungal  Fungal protein kinase


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  103.3   0.0   4.6e-33   1.4e-29     111     259 ..       1     167 [.       1     170 [. 0.91

  Alignments for each domain:
  == domain 1  score: 103.3 bits;  conditional E-value: 4.6e-33
                 HHHHHHTTEE-SS-SGGGEEEETTTEEEE-SGTTSEESSSSCS.............................BCTTTSCGGGS-HHHHTTSCBSHHHHH CS
     Pkinase 111 leylHskgiiHrDlKpeNiLidekgelKitDFGlakelesssk.............................ltsfvgtseYlAPEvlkeneyskkvDv 180
                 ++ylH+++++HrDlK++N+L+d+ g +K+tDFG+a +++ + +                             l+ ++gt +++APEv ++++y+k++Dv
  KOO24366.1   1 MAYLHRRQVMHRDLKSSNVLLDTAGGVKLTDFGVAVRVKDGRDsemhgyahgvqgagllwgdtdeferscdpLSGEMGTYRWMAPEVTRHEGYTKSADV 99 
                 68**************************************99999****************************************************** PP

                 HHHHHHHHHHHHSS-STTTSSHHHHHHHHHHTHHHHHHHCTSHH...HHHTTS-HHHHHHHHHHT-SSGCCSTTHHHHH CS
     Pkinase 181 WslGvilyelltgkppfsgekgkekvekeldqlekilkilgetkeklpeaseiseeakdllkkllkkdpkkRltaeell 259
                 +s++++l+ellt + pf+++   +   + +         +g +++  p + + ++ ++dl+  ++k+ p++R+ ++ +l
  KOO24366.1 100 FSYAMLLFELLTHEIPFADRPPLQ---AAV--------AIGLQDLRPPLPPDAPRALTDLVCACWKRRPTTRPKFDGVL 167
                 ******************333333...222........224458899**************************987766 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.5   0.1     2e-12   6.1e-09     116     157 ..       1      42 [.       1      53 [. 0.88
   2 !   62.2   0.0   1.5e-20   4.4e-17     167     259 .]      78     170 ..      66     170 .. 0.93

  Alignments for each domain:
  == domain 1  score: 35.5 bits;  conditional E-value: 2e-12
                  HHHHHHTTEEEST-SGGGEEEEETTEEEE-STTTHEETTTSS CS
  Pkinase_Tyr 116 meyLeskklvHrdlaarNvLlsenkvvkisDfGLardiekdd 157
                  m+yL++++++Hrdl + NvLl++   vk++DfG+a ++++  
   KOO24366.1   1 MAYLHRRQVMHRDLKSSNVLLDTAGGVKLTDFGVAVRVKDGR 42 
                  99*********************************9995544 PP

  == domain 2  score: 62.2 bits;  conditional E-value: 1.5e-20
                  SGGGGS-HHHHHHSEEEHHHHHHHHHHHHHHHHTTSSGTTTTSHHHHHHHHH.HTTEES-BBTTSBHHHHHHHHHHT-SSGGGS--HHHHHHHH CS
  Pkinase_Tyr 167 lpvkWmapEslkekkftsksDvWsfGvllwEiftlgespypglkneevlekl.kegkrlekpekcpeelyelmkkcweedpeeRptfselvekl 259
                    ++WmapE+ +++ +t+++Dv+s+++ll+E++t  e p+++  + +++ ++  ++ r + p ++p++l++l+  cw+++p+ Rp+f  ++++l
   KOO24366.1  78 GTYRWMAPEVTRHEGYTKSADVFSYAMLLFELLT-HEIPFADRPPLQAAVAIgLQDLRPPLPPDAPRALTDLVCACWKRRPTTRPKFDGVLTQL 170
                  5689******************************.8*******998888888799********************************9987765 PP

>> Kinase-like  Kinase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.3   0.1   1.1e-08   3.4e-05     158     198 ..       2      42 ..       1      52 [. 0.90

  Alignments for each domain:
  == domain 1  score: 23.3 bits;  conditional E-value: 1.1e-08
  Kinase-like 158 anLqakglvhgkftvdnllldekgglmlggftaLvragtkv 198
                  a+L+ ++++h ++++ n+lld  gg++l++f+  vr+++  
   KOO24366.1   2 AYLHRRQVMHRDLKSSNVLLDTAGGVKLTDFGVAVRVKDGR 42 
                  89********************************9998754 PP

>> APH  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.9   0.0   1.2e-05     0.037     165     194 ..       6      33 ..       2      37 .. 0.76
   2 ?   -0.2   0.0      0.26   7.9e+02     114     161 ..     115     157 ..      72     185 .. 0.61

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 1.2e-05
                 -EEEE-SS-SGGGEEEC..TTEEEEE---T CS
         APH 165 ptvllHgDlhpgNllvdpddgrvtGviDfe 194
                 +++++H+Dl++ N+l+d ++g    + Df+
  KOO24366.1   6 RRQVMHRDLKSSNVLLDTAGGVK--LTDFG 33 
                 89***************554444..66665 PP

  == domain 2  score: -0.2 bits;  conditional E-value: 0.26
                 TB-SHHCHTCCHHHHHHCHHHCCCGCCTCCHHHHHHHHHHHHHHHH-- CS
         APH 114 pladflaqdlellrqlesatarllaselldlleeleeqvlaalaallp 161
                 p+ad+++ ++++++ l + +++l++      + ++   +  a+++++p
  KOO24366.1 115 PFADRPPLQAAVAIGLQDLRPPLPPD-----APRALTDLVCACWKRRP 157
                 55555555455554444442222222.....22222223333333333 PP

>> Kdo  Lipopolysaccharide kinase (Kdo/WaaP) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.0   1.1e-05     0.034     133     164 ..       3      30 ..       1      43 [. 0.84

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 1.1e-05
         Kdo 133 klhragvnHadlyaknillqqeeeeeaeiwli 164
                  lhr++v+H+dl   n+ll++++     + l 
  KOO24366.1   3 YLHRRQVMHRDLKSSNVLLDTAG----GVKLT 30 
                 69*******************98....44455 PP

>> Pkinase_fungal  Fungal protein kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.0   6.5e-05      0.19     322     390 ..       4      92 ..       2     107 .. 0.82

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 6.5e-05
  Pkinase_fungal 322 LflkagiLHrDiSenNilitdskkegerkglLiDLDlakelsddssesgare..........................rtGTleFmaievlkgee 390
                     L+   +++HrD    N+l+            L D+ +a+ ++d + ++ +++                          ++GT  +ma ev + e 
      KOO24366.1   4 LH-RRQVMHRDLKSSNVLLD-----TAGGVKLTDFGVAVRVKDGRDSEMHGYahgvqgagllwgdtdeferscdplsgEMGTYRWMAPEVTRHEG 92 
                     66.8899************9.....566778***********866666443367788888999999999999999999***********999544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (270 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       155  (0.00864521); expected 358.6 (0.02)
Passed bias filter:                      139  (0.0077528); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.39u 0.25s 00:00:00.64 Elapsed: 00:00:00.40
# Mc/sec: 2048.12
//
Query:       KOO24367.1  [L=646]
Description: hypothetical protein Ctob_001002 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.4e-16   59.6   0.4    4.1e-16   58.9   0.4    1.4  1  DnaJ      DnaJ domain
    4.8e-08   33.2   0.0    8.5e-08   32.4   0.0    1.3  1  FHA       FHA domain
    6.8e-08   32.9   6.9    1.3e-07   32.0   6.9    1.4  1  ShK       ShK domain-like
  ------ inclusion threshold ------
       0.69   10.6   4.1        1.4    9.6   4.1    1.4  1  PCNP      PEST, proteolytic signal-containing nuclear protein


Domain annotation for each model (and alignments):
>> DnaJ  DnaJ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.9   0.4   9.1e-20   4.1e-16       2      63 .]      17      82 ..      16      82 .. 0.90

  Alignments for each domain:
  == domain 1  score: 58.9 bits;  conditional E-value: 9.1e-20
                HHHHHTSSTTG-HHHHHHHHHHHHHHHSTTTSCCHH....HHHHHHHHHHHHHHHHTSHHHHHHHH CS
        DnaJ  2 yYeiLgvskdasedeIkkaYrklalkyHPDknpkdp....eaeekFkeineAyevLsdpekRkqYD 63
                +Y+ Lg++++a++  I+ka++ lalk HPDk ++d      a+e+Fk+ +eAyevLsd+  R++YD
  KOO24367.1 17 LYDRLGLARSADHRAIRKAWHLLALKEHPDKVNGDAaekeAAAERFKRAAEAYEVLSDAALRERYD 82
                8*****************************88555443448889*********************9 PP

>> FHA  FHA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.4   0.0   1.9e-11   8.5e-08      17      68 ..     396     446 ..     388     447 .. 0.90

  Alignments for each domain:
  == domain 1  score: 32.4 bits;  conditional E-value: 1.9e-11
                 TSTTTEEEE..EEETTCEEEEEEEESSSSSEEETTEEESTTSEEEE-TTEEEEE CS
         FHA  17 siSrkHali..kfdkgsgkvyleDlgSknGtfvNgqrigkgepveLksgdviel 68 
                 ++S++Ha i  ++d++   ++l+D +S+nGtf++g + ++g+p++L sg+v+ +
  KOO24367.1 396 KVSKQHAHIalSVDGT--VLTLTD-KSTNGTFIDGAKAPPGNPIQLVSGSVLSF 446
                 69******95556666..******.9*************************988 PP

>> ShK  ShK domain-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.0   6.9   2.9e-11   1.3e-07       1      36 [.     357     390 ..     357     390 .. 0.97

  Alignments for each domain:
  == domain 1  score: 32.0 bits;  conditional E-value: 2.9e-11
         ShK   1 tCtDpssdCaswaalgfCtnptyrdlmkeqCpktCg 36 
                 +C+D++++C +w+ +g+C++++  ++m++ Cp++C+
  KOO24367.1 357 KCVDANGHCKQWRDQGECERNP--SFMSDACPRSCR 390
                 6*********************..***********5 PP

>> PCNP  PEST, proteolytic signal-containing nuclear protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   4.1   0.00031       1.4      52     111 ..     490     545 ..     458     547 .. 0.64

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 0.00031
        PCNP  52 isKigfslskqaakkkkpisiklgasskPkeeapklaakkptvaavfnedddsEPEEmPa 111
                  s  +f+ ++ +a++++  s    as++ + +ap+ aa+k  v +vf++d+d+ P   P+
  KOO24367.1 490 ASEPAFTEQSASAHASAHAS----ASAHASAPAPEPAARKQNVWSVFDDDEDDKPSPSPP 545
                 33444444444444444444....44445566688899*****************98886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (646 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       743  (0.0414412); expected 358.6 (0.02)
Passed bias filter:                      396  (0.0220871); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.60u 0.26s 00:00:00.86 Elapsed: 00:00:00.43
# Mc/sec: 4529.98
//
Query:       KOO24368.1  [L=985]
Description: transcription initiation factor tfiid subunit 12 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.5e-19   70.2   2.2    2.1e-19   69.8   0.3    2.3  2  TFIID_20kDa    Transcription initiation factor TFIID subunit 
    3.3e-05   24.1   0.2    8.5e-05   22.8   0.2    1.7  1  CBFD_NFYB_HMF  Histone-like transcription factor (CBF/NF-Y) a
     0.0022   18.4   0.2     0.0022   18.4   0.2    1.9  2  Histone        Core histone H2A/H2B/H3/H4


Domain annotation for each model (and alignments):
>> TFIID_20kDa  Transcription initiation factor TFIID subunit A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.1       1.1   6.3e+03      33      43 ..     649     659 ..     644     661 .. 0.88
   2 !   69.8   0.3   3.5e-23   2.1e-19       6      68 .]     883     945 ..     881     945 .. 0.98

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 1.1
                  HHHHHHHHHHH CS
  TFIID_20kDa  33 Fvesvtkfack 43 
                  F+ sv++fac 
   KOO24368.1 649 FIGSVVAFACT 659
                  9*********7 PP

  == domain 2  score: 69.8 bits;  conditional E-value: 3.5e-23
                  HHHHHCC-SS----HHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-SEE-HHHHHHHHHHHS-- CS
  TFIID_20kDa   6 qdLvqqvdsetkldedvedlLleiaddFvesvtkfacklakhRksdklevrDiqlhlernynm 68 
                  ++L +qvd+  +ld + e ++ +iaddFve+v +fac+la hR   +le++Diql le n+nm
   KOO24368.1 883 NELAKQVDQRVELDREAERVMQDIADDFVENVAAFACELAVHRGGTTLEAKDIQLALEMNWNM 945
                  5899**********************************************************9 PP

>> CBFD_NFYB_HMF  Histone-like transcription factor (CBF/NF-Y) and archaeal histone
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.8   0.2   1.4e-08   8.5e-05      19      65 .]     893     939 ..     885     939 .. 0.90

  Alignments for each domain:
  == domain 1  score: 22.8 bits;  conditional E-value: 1.4e-08
                    S-B-HHHHHHHHHHHHHHHHHHHHHHHHHHCCTTSSCE-HHHHHHHH CS
  CBFD_NFYB_HMF  19 rkiakdAkeliaecveefieelaseAaeickkekrKtikaehiklAv 65 
                      + ++A  ++++++  f+e +a+ A+e++ +++  t+ a++i+lA+
     KOO24368.1 893 VELDREAERVMQDIADDFVENVAAFACELAVHRGGTTLEAKDIQLAL 939
                    44779****************************************97 PP

>> Histone  Core histone H2A/H2B/H3/H4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.4   0.2   3.6e-07    0.0022      75     128 ..     886     939 ..     882     942 .. 0.89
   2 ?   -3.9   0.4       2.8   1.6e+04      53      68 ..     962     977 ..     953     983 .. 0.39

  Alignments for each domain:
  == domain 1  score: 18.4 bits;  conditional E-value: 3.6e-07
                 H.TTSSSXEEXHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTXSEEXHHHHHHHH CS
     Histone  75 vksekedlrisaeavlalqealEallvelfeeAnllakhaKRvTitpkDiqlAr 128
                  k+ ++   +++ea  ++q ++ ++ + ++  A+ la h+   T+ +kDiqlA+
  KOO24368.1 886 AKQVDQRVELDREAERVMQDIADDFVENVAAFACELAVHRGGTTLEAKDIQLAL 939
                 4455558889999****************************************7 PP

  == domain 2  score: -3.9 bits;  conditional E-value: 2.8
                 HHHHXXSXXSXHHHHH CS
     Histone  53 kyqkstdlliqklpfa 68 
                 k+ + + ++++k  ++
  KOO24368.1 962 KKNETEVHKSRKQEVR 977
                 2222222222222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (985 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       799  (0.0445647); expected 358.6 (0.02)
Passed bias filter:                      531  (0.0296168); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.73u 0.28s 00:00:01.01 Elapsed: 00:00:00.45
# Mc/sec: 6600.29
//
Query:       KOO24369.1  [L=314]
Description: hypothetical protein Ctob_001005 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (314 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       351  (0.0195772); expected 358.6 (0.02)
Passed bias filter:                      293  (0.0163422); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.44u 0.26s 00:00:00.70 Elapsed: 00:00:00.42
# Mc/sec: 2246.21
//
Query:       KOO24370.1  [L=552]
Description: cycloartenol synthase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.7e-46  158.0   0.1    4.4e-46  157.3   0.1    1.3  1  SQHop_cyclase_N  Squalene-hopene cyclase N-terminal domain
    5.6e-11   42.0   9.4    8.5e-10   38.2   0.1    3.5  4  Prenyltrans      Prenyltransferase and squalene oxidase repea
    0.00039   19.6   1.4     0.0025   17.0   0.4    2.5  3  SQHop_cyclase_C  Squalene-hopene cyclase C-terminal domain


Domain annotation for each model (and alignments):
>> SQHop_cyclase_N  Squalene-hopene cyclase N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  157.3   0.1   7.4e-50   4.4e-46       3     263 ..     274     548 ..     254     551 .. 0.88

  Alignments for each domain:
  == domain 1  score: 157.3 bits;  conditional E-value: 7.4e-50
  SQHop_cyclase_N   3 raaeallslqkpdGhWvgeLeanvtitaeyillreflgedd....eeeeekiakylrsqqredGgWelypggpgdlsttveaYlALkllGdspd 92 
                      +a ++   lq++dGhW g+      +    i++  + g+ d     ++++++a+ylr +q+ dGgW+++ ++p+ ++ +v +Y+AL+llG+ ++
       KOO24370.1 274 KALSWYEVLQSDDGHWAGDYGGPHFLMPGLIVVWYVTGRLDtfldGNQRAAMAHYLRVHQQLDGGWGMHIESPSTMFGSVMCYVALRLLGTLAE 367
                      5666667799***********999999999999999877663443689********************************************** PP

  SQHop_cyclase_N  93 apalarArefilarGGvakvrvfTrilLalfglvpweavpalPpelmlLPkwfpfniykfsswaRttivPllilsakkpvaklpr.....evdl 181
                      +pa++r  efi++ GG+  + ++ +++L+l+g+++w++ +++Ppe+ lLP+w+pf+  ++ ++ R +++P+++l+ +k+v++  +     ++  
       KOO24370.1 368 DPAMQRGCEFIRSYGGALYTGSWAKFYLCLLGVMDWKGHNVIPPEMWLLPRWMPFHPGRLWCHCRMVYLPMCYLYGHKFVYADAEsdpliAALR 461
                      ********************************************************************************99866677888888 PP

  SQHop_cyclase_N 182 dELfveppeevkye.....lrkekkalswtklflaldkvlkllerl...plkplrkrAlrkaeewilerqeasgglggifpamvnsvlaL 263
                      +EL++ p e+++ e     + + ++ + ++ +++++++vl+l+e++    +++lr+r+l+ a +++ ++ + ++++  i p  vn v++L
       KOO24370.1 462 AELYPVPYESIRWEgtadhVAEIDNYSPMHPVMHVANAVLRLWESWggsLMRALRRRGLAFALDYMAAEDN-QTNYVCIGP--VNKVFCL 548
                      9***9999999998433222333336666888**********9977555899***************9988.667777777..5555555 PP

>> Prenyltrans  Prenyltransferase and squalene oxidase repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.7      0.94   5.6e+03      35      44 .]     128     137 ..     125     137 .. 0.81
   2 !    8.6   0.1   0.00026       1.5      13      29 ..     282     297 ..     271     312 .. 0.81
   3 !   38.2   0.1   1.4e-13   8.5e-10       3      44 .]     322     363 ..     321     363 .. 0.95
   4 ?   -1.5   0.0      0.36   2.2e+03       3      12 ..     371     380 ..     369     394 .. 0.64

  Alignments for each domain:
  == domain 1  score: -2.8 bits;  conditional E-value: 0.94
                  HHHHHHHHCT CS
  Prenyltrans  35 walaaLallG 44 
                   +l++LallG
   KOO24370.1 128 AVLSTLALLG 137
                  57999**998 PP

  == domain 2  score: 8.6 bits;  conditional E-value: 0.00026
                  HSHTTS-BBSSTTSSBB CS
  Prenyltrans  13 cQnedGGwggrpgsesd 29 
                   Q +dG+w+g++g++ +
   KOO24370.1 282 LQSDDGHWAGDYGGP-H 297
                  689**********96.4 PP

  == domain 3  score: 38.2 bits;  conditional E-value: 1.4e-13
                  HHHHHHHHHHHSHTTS-BBSSTTSSBBHHHHHHHHHHHHHCT CS
  Prenyltrans   3 vekavefLlscQnedGGwggrpgsesdtyytywalaaLallG 44 
                  ++ ++ +L+ +Q+ dGGwg + +s+s+++++ +++ aL llG
   KOO24370.1 322 RAAMAHYLRVHQQLDGGWGMHIESPSTMFGSVMCYVALRLLG 363
                  677899**********************************98 PP

  == domain 4  score: -1.5 bits;  conditional E-value: 0.36
                  HHHHHHHHHH CS
  Prenyltrans   3 vekavefLls 12 
                  +++ +ef++s
   KOO24370.1 371 MQRGCEFIRS 380
                  6778888887 PP

>> SQHop_cyclase_C  Squalene-hopene cyclase C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.0      0.36   2.1e+03     211     229 ..     159     177 ..     152     229 .. 0.64
   2 !   17.0   0.4   4.1e-07    0.0025     157     232 ..     268     345 ..     261     351 .. 0.72
   3 !    9.0   0.0   0.00011      0.66     162     217 ..     323     379 ..     309     394 .. 0.59

  Alignments for each domain:
  == domain 1  score: -2.5 bits;  conditional E-value: 0.36
                      HHHHHHHTT--TTSSBB-- CS
  SQHop_cyclase_C 211 kavdWlksvqnedGGWGes 229
                      +  +W +++ + d GW  +
       KOO24370.1 159 REPQWANKTSHLDAGWRCE 177
                      4456777777777777433 PP

  == domain 2  score: 17.0 bits;  conditional E-value: 4.1e-07
                      TSHHHHHHHHHHHHHS-TTS----SSBSSH.HH.HHHHHHHHHHHTT--TTSHHHHHHHHHHHTT--TTSSBB--GGG CS
  SQHop_cyclase_C 157 dsealkraveylkkeqepdGsWfGrWGvny.iy.GtwsvlsalaavgedleepvirkavdWlksvqnedGGWGesaes 232
                      + +al++a+++ +  q  dG W G +G  + +  G + v      +++ l+ +  +  +++l+ +q+ dGGWG + es
       KOO24370.1 268 TLDALRKALSWYEVLQSDDGHWAGDYGGPHfLMpGLIVVWYVTGRLDTFLDGNQRAAMAHYLRVHQQLDGGWGMHIES 345
                      668899********************9754144243333333334444445555555579*************99887 PP

  == domain 3  score: 9.0 bits;  conditional E-value: 0.00011
                      HHHHHHHHHHS-TTS----SSBS.SHHHHHHHHHHHHHHTT--TTSHHHHHHHHHHH CS
  SQHop_cyclase_C 162 kraveylkkeqepdGsWfGrWGv.nyiyGtwsvlsalaavgedleepvirkavdWlk 217
                      +   +yl+ +q+ dG W     +   ++G +++ +al+ +g+  e+p+++++ ++++
       KOO24370.1 323 AAMAHYLRVHQQLDGGWGMHIESpSTMFGSVMCYVALRLLGTLAEDPAMQRGCEFIR 379
                      444456666666666654433321455666666666666666666666666666555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (552 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       284  (0.0158403); expected 358.6 (0.02)
Passed bias filter:                      238  (0.0132746); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.49u 0.26s 00:00:00.75 Elapsed: 00:00:00.41
# Mc/sec: 4059.81
//
Query:       KOO24371.1  [L=297]
Description: hypothetical protein Ctob_001007 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    8.8e-22   75.0   7.2    4.8e-05   22.6   0.1    5.1  5  EF-hand_1     EF hand
      2e-20   73.0   2.8    3.3e-10   40.3   0.2    2.6  2  EF-hand_7     EF-hand domain pair
    4.2e-18   63.9   6.2    0.00021   20.6   0.1    5.0  4  EF-hand_5     EF hand
    4.6e-18   63.5   4.2     0.0032   17.3   0.1    5.2  5  EF-hand_6     EF-hand domain
    3.9e-17   61.8   5.6     0.0017   18.1   0.1    4.7  5  EF-hand_8     EF-hand domain pair
    9.3e-05   22.0   4.7    0.00017   21.2   0.3    3.3  3  SHOCT         Short C-terminal domain
     0.0031   17.8   0.3        0.6   10.4   0.1    2.6  2  SPARC_Ca_bdg  Secreted protein acidic and rich in cysteine Ca
  ------ inclusion threshold ------
      0.085   13.2   0.2       0.44   10.9   0.0    2.2  3  EF-hand_9     EF-hand domain
       0.13   12.2   0.0       0.25   11.3   0.0    1.4  1  Cdc6_C        CDC6, C terminal winged helix domain
       0.53   10.3   1.4         18    5.4   0.0    3.2  3  EF-hand_4     Cytoskeletal-regulatory complex EF hand


Domain annotation for each model (and alignments):
>> EF-hand_1  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   0.0   1.5e-06    0.0027       2      22 ..      43      63 ..      42      69 .. 0.88
   2 !   22.6   0.1   2.7e-08   4.8e-05       4      24 ..      83     103 ..      80     107 .. 0.87
   3 !   21.8   0.1     5e-08     9e-05       2      27 ..     118     143 ..     117     145 .. 0.90
   4 !   14.1   0.0   1.4e-05     0.025       6      27 ..     161     182 ..     157     184 .. 0.88
   5 ?   -3.2   0.1       4.6   8.2e+03      15      21 ..     279     285 ..     279     285 .. 0.92

  Alignments for each domain:
  == domain 1  score: 17.1 bits;  conditional E-value: 1.5e-06
                HHHHHHHHTTTSSSEEEHHHH CS
   EF-hand_1  2 lkeiFrefDkDgdGkIdfeEf 22
                l+++F++fD +gdG ++  E 
  KOO24371.1 43 LRKLFDKFDANGDGALSQAEH 63
                89***************9985 PP

  == domain 2  score: 22.6 bits;  conditional E-value: 2.7e-08
                 HHHHHHTTTSSSEEEHHHHHH CS
   EF-hand_1   4 eiFrefDkDgdGkIdfeEfke 24 
                   Fr +D Dg+G+++f+Ef++
  KOO24371.1  83 AEFRTVDADGSGFVSFDEFLT 103
                 56*****************87 PP

  == domain 3  score: 21.8 bits;  conditional E-value: 5e-08
                 HHHHHHHHTTTSSSEEEHHHHHHHHH CS
   EF-hand_1   2 lkeiFrefDkDgdGkIdfeEfkellk 27 
                   ++F+ fD+D++G++++ Ef +ll+
  KOO24371.1 118 AADMFAFFDVDHSGTLELHEFASLLN 143
                 568*******************9986 PP

  == domain 4  score: 14.1 bits;  conditional E-value: 1.4e-05
                 HHHHTTTSSSEEEHHHHHHHHH CS
   EF-hand_1   6 FrefDkDgdGkIdfeEfkellk 27 
                 F+ +DkDg+  I+f Ef+++ +
  KOO24371.1 161 FANADKDGSNSITFIEFCAYYE 182
                 899***************9866 PP

  == domain 5  score: -3.2 bits;  conditional E-value: 4.6
                 SEEEHHH CS
   EF-hand_1  15 GkIdfeE 21 
                 G+I+ eE
  KOO24371.1 279 GFITQEE 285
                 99**998 PP

>> EF-hand_7  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.3   0.2   1.8e-13   3.3e-10       2      70 ..      41     105 ..      40     106 .. 0.94
   2 !   32.5   0.3   4.8e-11   8.6e-08       3      70 ..     117     181 ..     115     182 .. 0.91

  Alignments for each domain:
  == domain 1  score: 40.3 bits;  conditional E-value: 1.8e-13
   EF-hand_7   2 eklkeaFkelDtdgdgyldkee..llrllrkifqgagegsklsdeelellfkefDtdkdGvisfdEFlkly 70 
                 ++l+  F+++D +gdg l+++e  ll l+ +      ++ +++ +el + f+ +D d++G +sfdEFl++y
  KOO24371.1  41 QRLRKLFDKFDANGDGALSQAEhgLL-LFNC-----FPERVIDAKELLAEFRTVDADGSGFVSFDEFLTYY 105
                 78999*****************9777.9999.....8999****************************998 PP

  == domain 2  score: 32.5 bits;  conditional E-value: 4.8e-11
   EF-hand_7   3 klkeaFkelDtdgdgyldkeellrllrkifqgagegsklsdeelellfkefDtdkdGvisfdEFlkly 70 
                 +  ++F  +D+d++g l+  e+ +ll + f    ++ +  + ++   f + D+d++ +i+f EF+++y
  KOO24371.1 117 EAADMFAFFDVDHSGTLELHEFASLLNNVF---PTQCDANESAIASEFANADKDGSNSITFIEFCAYY 181
                 66789**********************998...7777777788***********************99 PP

>> EF-hand_5  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.6   0.1   1.2e-07   0.00021       1      20 [.      43      62 ..      43      62 .. 0.92
   2 !   19.9   0.2     2e-07   0.00036       3      22 ..      84     102 ..      81     105 .. 0.89
   3 !   14.7   0.0   8.6e-06     0.015       3      24 ..     120     141 ..     118     142 .. 0.91
   4 !    8.1   0.0    0.0011         2       5      21 ..     161     177 ..     157     184 .. 0.88

  Alignments for each domain:
  == domain 1  score: 20.6 bits;  conditional E-value: 1.2e-07
                HHHHHHHH-SS-SSCE-HHH CS
   EF-hand_5  1 lkdtFqaiDlNgDGkIskeE 20
                l+++F+++D+NgDG +s  E
  KOO24371.1 43 LRKLFDKFDANGDGALSQAE 62
                789*************9877 PP

  == domain 2  score: 19.9 bits;  conditional E-value: 2e-07
                 HHHHHH-SS-SSCE-HHHHH CS
   EF-hand_5   3 dtFqaiDlNgDGkIskeELk 22 
                 + F+ +D++g+G++s++E+ 
  KOO24371.1  84 E-FRTVDADGSGFVSFDEFL 102
                 5.*****************6 PP

  == domain 3  score: 14.7 bits;  conditional E-value: 8.6e-06
                 HHHHHH-SS-SSCE-HHHHHHH CS
   EF-hand_5   3 dtFqaiDlNgDGkIskeELktl 24 
                 d+F  +D++++G++   E+  l
  KOO24371.1 120 DMFAFFDVDHSGTLELHEFASL 141
                 79*****************886 PP

  == domain 4  score: 8.1 bits;  conditional E-value: 0.0011
                 HHHH-SS-SSCE-HHHH CS
   EF-hand_5   5 FqaiDlNgDGkIskeEL 21 
                 F  +D++g+  I++ E+
  KOO24371.1 161 FANADKDGSNSITFIEF 177
                 8899**********998 PP

>> EF-hand_6  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   0.1   1.9e-06    0.0035       1      21 [.      42      62 ..      42      62 .. 0.93
   2 !   14.6   0.1   1.3e-05     0.024       5      25 ..      84     104 ..      76     108 .. 0.86
   3 !   17.3   0.1   1.8e-06    0.0032       4      27 ..     120     143 ..     117     148 .. 0.91
   4 !   11.6   0.0   0.00012      0.21       6      27 ..     161     182 ..     156     189 .. 0.87
   5 ?   -2.5   0.0       4.1   7.3e+03      17      25 ..     194     202 ..     194     206 .. 0.82

  Alignments for each domain:
  == domain 1  score: 17.2 bits;  conditional E-value: 1.9e-06
   EF-hand_6  1 elreaFklfDkdgdGkidaeE 21
                +lr++F++fD +gdG ++++E
  KOO24371.1 42 RLRKLFDKFDANGDGALSQAE 62
                69***************9987 PP

  == domain 2  score: 14.6 bits;  conditional E-value: 1.3e-05
   EF-hand_6   5 aFklfDkdgdGkidaeElrka 25 
                  F+  D dg+G+++++E+   
  KOO24371.1  84 EFRTVDADGSGFVSFDEFLTY 104
                 6999**************865 PP

  == domain 3  score: 17.3 bits;  conditional E-value: 1.8e-06
   EF-hand_6   4 eaFklfDkdgdGkidaeElrkalr 27 
                 + F  fD+d++G++  +E+ ++l+
  KOO24371.1 120 DMFAFFDVDHSGTLELHEFASLLN 143
                 78******************9997 PP

  == domain 4  score: 11.6 bits;  conditional E-value: 0.00012
   EF-hand_6   6 FklfDkdgdGkidaeElrkalr 27 
                 F   Dkdg+++i++ E+ + + 
  KOO24371.1 161 FANADKDGSNSITFIEFCAYYE 182
                 8999*************99876 PP

  == domain 5  score: -2.5 bits;  conditional E-value: 4.1
   EF-hand_6  17 idaeElrka 25 
                 ++++Elr+a
  KOO24371.1 194 LTTQELRSA 202
                 7999**988 PP

>> EF-hand_8  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.4   0.0   2.8e-05      0.05      30      47 ..      45      62 ..      34      63 .. 0.90
   2 !   18.1   0.1   9.6e-07    0.0017      26      51 ..      79     104 ..      75     107 .. 0.87
   3 !   11.8   0.3   9.2e-05      0.17      26      52 ..     116     142 ..     113     144 .. 0.92
   4 !   17.4   0.0   1.7e-06     0.003      24      54 ..     153     183 ..     148     184 .. 0.91
   5 ?   -3.9   0.0       7.3   1.3e+04       5      14 ..     194     203 ..     194     207 .. 0.79

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 2.8e-05
   EF-hand_8 30 ilfrefDtdgdGkisfeE 47
                 lf++fD +gdG++s+ E
  KOO24371.1 45 KLFDKFDANGDGALSQAE 62
                59*************998 PP

  == domain 2  score: 18.1 bits;  conditional E-value: 9.6e-07
   EF-hand_8  26 eevdilfrefDtdgdGkisfeEFcvl 51 
                 +e+ + fr++D dg+G +sf+EF+ +
  KOO24371.1  79 KELLAEFRTVDADGSGFVSFDEFLTY 104
                 566678*****************987 PP

  == domain 3  score: 11.8 bits;  conditional E-value: 9.2e-05
   EF-hand_8  26 eevdilfrefDtdgdGkisfeEFcvll 52 
                 +e+ ++f  fD d++G++ + EF  ll
  KOO24371.1 116 DEAADMFAFFDVDHSGTLELHEFASLL 142
                 68899******************9997 PP

  == domain 4  score: 17.4 bits;  conditional E-value: 1.7e-06
   EF-hand_8  24 seeevdilfrefDtdgdGkisfeEFcvller 54 
                 +e+++ + f  +D dg++ i+f EFc+++er
  KOO24371.1 153 NESAIASEFANADKDGSNSITFIEFCAYYER 183
                 78999999999*****************998 PP

  == domain 5  score: -3.9 bits;  conditional E-value: 7.3
   EF-hand_8   5 Itreelrril 14 
                 +t++elr+++
  KOO24371.1 194 LTTQELRSAA 203
                 5899999976 PP

>> SHOCT  Short C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.2   0.6      0.51   9.2e+02       3      12 ..      40      49 ..      38      49 .. 0.81
   2 ?   -1.1   0.0         1   1.8e+03      13      19 ..      56      62 ..      55      63 .. 0.88
   3 !   21.2   0.3   9.3e-08   0.00017       2      25 ..     268     291 ..     268     294 .. 0.93

  Alignments for each domain:
  == domain 1  score: -0.2 bits;  conditional E-value: 0.51
       SHOCT  3 LekLkeLyar 12
                 ++L++L+++
  KOO24371.1 40 RQRLRKLFDK 49
                5899999996 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 1
       SHOCT 13 GeIteEE 19
                G+++++E
  KOO24371.1 56 GALSQAE 62
                9*****9 PP

  == domain 3  score: 21.2 bits;  conditional E-value: 9.3e-08
       SHOCT   2 aLekLkeLyarGeIteEEFeakKa 25 
                 +L++L+eL+ +G It+EE +ak+ 
  KOO24371.1 268 RLAELAELLSAGFITQEEHDAKRS 291
                 699*******************96 PP

>> SPARC_Ca_bdg  Secreted protein acidic and rich in cysteine Ca binding region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.9   0.0     0.018        32      48      76 ..      35      63 ..      16     103 .. 0.72
   2 !   10.4   0.1   0.00033       0.6      55     112 ..     117     179 ..     109     180 .. 0.84

  Alignments for each domain:
  == domain 1  score: 4.9 bits;  conditional E-value: 0.018
  SPARC_Ca_bdg 48 nlkeckepvawkFsklDtnsdkvlsksEL 76
                    ++ ++ ++  F+k+D n d+ ls++E 
    KOO24371.1 35 LGAAERQRLRKLFDKFDANGDGALSQAEH 63
                  55555666777799999999999999884 PP

  == domain 2  score: 10.4 bits;  conditional E-value: 0.00033
  SPARC_Ca_bdg  55 pvawkFsklDtnsdkvlsksELaplrapl.....vklehCikpflescDadkdkkislkEwce 112
                   ++a +F  +D+++ ++l+ +E a+l +++     + +e+ i+  + ++D d  ++i+  E+c 
    KOO24371.1 117 EAADMFAFFDVDHSGTLELHEFASLLNNVfptqcDANESAIASEFANADKDGSNSITFIEFCA 179
                   56669******************9987662222256899**********************95 PP

>> EF-hand_9  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.7   0.0       9.1   1.6e+04      37      49 ..      43      55 ..      38      58 .. 0.57
   2 ?   -1.6   0.0         2   3.6e+03       6      60 ..      87     103 ..      83     108 .. 0.58
   3 ?   10.9   0.0   0.00024      0.44       3      60 ..     121     179 ..     119     183 .. 0.91

  Alignments for each domain:
  == domain 1  score: -3.7 bits;  conditional E-value: 9.1
   EF-hand_9 37 LeelakelDPdge 49
                L +l  ++D +g 
  KOO24371.1 43 LRKLFDKFDANGD 55
                5555555665554 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 2
   EF-hand_9   6 vcDtqktGrVpvsrlidyLravtaqdpeeseLeelakelDPdgedasvdldtflr 60 
                                                        D dg  + v +d fl+
  KOO24371.1  87 TV-------------------------------------DADGS-GFVSFDEFLT 103
                 44.....................................45555.5555665554 PP

  == domain 3  score: 10.9 bits;  conditional E-value: 0.00024
   EF-hand_9   3 vFevcDtqktGrVpvsrlidyLrav..taqdpeeseLeelakelDPdgedasvdldtflr 60 
                 +F  +D++  G+  + +  ++L  v  t+ d +es++ +  +++D dg  +s+ +  f++
  KOO24371.1 121 MFAFFDVDHSGTLELHEFASLLNNVfpTQCDANESAIASEFANADKDGS-NSITFIEFCA 179
                 699********************9966777******************9.9999988886 PP

>> Cdc6_C  CDC6, C terminal winged helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   0.00014      0.25       9      44 ..     162     201 ..     155     206 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00014
                 C...HCSSS-EEHHHHHHHHHHHHHHT.T-----HHHHHH CS
      Cdc6_C   9 r...ksgkeevttgevyevYkslCese.gvdpltqrevsd 44 
                     k+g++++t+ e    Y++lC+ + + +plt++e ++
  KOO24371.1 162 AnadKDGSNSITFIEFCAYYERLCSLYgDTKPLTTQELRS 201
                 3344699********************999****999876 PP

>> EF-hand_4  Cytoskeletal-regulatory complex EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.0   0.1      0.22     4e+02      45      65 ..      81     101 ..      38     109 .. 0.54
   2 ?    5.4   0.0    0.0098        18      43      73 ..     116     146 ..     104     161 .. 0.81
   3 ?   -0.1   0.0      0.49   8.7e+02      49      67 ..     161     179 ..     147     188 .. 0.73

  Alignments for each domain:
  == domain 1  score: 1.0 bits;  conditional E-value: 0.22
   EF-hand_4  45 lekiwdladidedgkldfeef 65 
                 l   +   d d  g + f+ef
  KOO24371.1  81 LLAEFRTVDADGSGFVSFDEF 101
                 333334445555566667766 PP

  == domain 2  score: 5.4 bits;  conditional E-value: 0.0098
   EF-hand_4  43 dklekiwdladidedgkldfeefciamrlif 73 
                 d+ + ++ + d+d+ g+l+++ef+  +  +f
  KOO24371.1 116 DEAADMFAFFDVDHSGTLELHEFASLLNNVF 146
                 6667788999*************98887777 PP

  == domain 3  score: -0.1 bits;  conditional E-value: 0.49
   EF-hand_4  49 wdladidedgkldfeefci 67 
                 +  ad d  +++ f efc 
  KOO24371.1 161 FANADKDGSNSITFIEFCA 179
                 4456666677899****96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (297 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       337  (0.0187964); expected 358.6 (0.02)
Passed bias filter:                      322  (0.0179597); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.43u 0.22s 00:00:00.65 Elapsed: 00:00:00.38
# Mc/sec: 2350.08
//
Query:       KOO24372.1  [L=399]
Description: snf2 family DNA-dependent ATPase, partial [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      2e-19   70.0   0.0    5.2e-19   68.6   0.0    1.7  2  Helicase_C  Helicase conserved C-terminal domain
      9e-06   24.6   0.1    1.7e-05   23.7   0.1    1.4  1  SNF2_N      SNF2 family N-terminal domain
     0.0013   18.0   0.0        1.4    8.0   0.0    2.3  2  HDA2-3      Class II histone deacetylase complex subunits 2 a


Domain annotation for each model (and alignments):
>> Helicase_C  Helicase conserved C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.0       1.4   8.3e+03      57      82 ..      28      54 ..      23      65 .. 0.61
   2 !   68.6   0.0   8.7e-23   5.2e-19       2     111 .]     182     297 ..     181     297 .. 0.90

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 1.4
                HHHHHHH.TTSSSEEEESGGGTSSSTS CS
  Helicase_C 57 eileqfn.kgesdvLiatdvaerGidi 82
                e+l+q   k+e  +L++ ++a++ + i
  KOO24372.1 28 EVLTQLVpKQEKECLLTMSAAQQTLYI 54
                556665524444477777777665555 PP

  == domain 2  score: 68.6 bits;  conditional E-value: 8.7e-23
                 HHHHHHHHH.HHTTTTSEEEEEESSHHHHHHHHHHHHHT..TSTEEEESTTSTHHHHHHHHHHHH..TTSSS.EEEESGGGTSSSTSTTESEEEESSSS CS
  Helicase_C   2 kleallell.kleeeggkilifvntidrlekvklllekk..gikvavlhgelpqnereeileqfn..kgesd.vLiatdvaerGidipkvnlVinfdlp 94 
                 k++ l +ll +l+e g+++lif+++ ++l+ ++ ll  +   +++++l+g +p  er+  +++f+  + ++  +L++t+++++Gi+++ +++Vi  dl+
  KOO24372.1 182 KMRELRRLLpELKEGGHRCLIFSQSLEMLDLLEHLLGPSglRLHYCRLDGGTPVAERQVKIDKFQaaDSKIFaFLLSTRAGGQGINLTAADTVILHDLD 280
                 778889999999*****************88677766666789*********************9653444459************************* PP

                 SSHHHHHHHHTTSSSTT CS
  Helicase_C  95 rnvtsyiqriGRtgRag 111
                 +n++   q+++R++R g
  KOO24372.1 281 WNPQLDRQAVDRAHRLG 297
                 ***************86 PP

>> SNF2_N  SNF2 family N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.7   0.1   2.8e-09   1.7e-05     261     349 ..      14     105 ..       7     106 .. 0.76

  Alignments for each domain:
  == domain 1  score: 23.7 bits;  conditional E-value: 2.8e-09
                 HTT-STTEE---GGGT--S---EEEEEEEEE--HHHHHHHH....................HHHHHH-HHH-....HHHHHHHHHHHHH---X CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx....xxxxxxxxxxxxxxxxx RF
      SNF2_N 261 lqllqrlmlrrakkdveknlPpkteeiiflklskverksYnrllevlrkkalakllkrseaalkssskskek....ilelllelrqacnhpql 349
                 + ll++++lrr+k++v  +l pk+e+  +l +s+ ++ +Y ++l  +   a   l++++ aa    ++++++      + + elr+a nhp l
  KOO24372.1  14 RRLLAPFVLRRRKSEVLTQLVPKQEKECLLTMSAAQQTLYIERLRLASI-ASTALHPSAAAAGAPRRSNRAVpsqtAASHFAELRKAANHPLL 105
                 579**************************************55554433.33344444444444433333446788889999*******9976 PP

>> HDA2-3  Class II histone deacetylase complex subunits 2 and 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.0   0.0   0.00024       1.4      49      81 ..      87     119 ..      19     137 .. 0.80
   2 !    7.7   0.0    0.0003       1.8      84     246 ..     174     320 ..     169     334 .. 0.71

  Alignments for each domain:
  == domain 1  score: 8.0 bits;  conditional E-value: 0.00024
                 HHHHHHH.HHHHHHH-GGGT--TT--S-S-STT CS
      HDA2-3  49 kslticlenlslvanHPsLLvdHympkklllke 81 
                 +  +  + +l+  anHP LL  Hy +  +    
  KOO24372.1  87 QTAASHFAELRKAANHPLLLRSHYTDAMIEQIA 119
                 55566678999*************987666555 PP

  == domain 2  score: 7.7 bits;  conditional E-value: 0.0003
                 HHHHHT-HHHHHHHHHHHHHTTSS....EEEEEEE-STHHHHHHHHHH..TTSSSEEEESSS.--S--S---S-..................-SEEEEE CS
      HDA2-3  84 eklaetSgKFkvlndlvnliierkrksslnvlvvakskkeldLiEall..lGkklkikrysg.eklydekkkkskdtkknsrktkeklkkkihsltihl 179
                 +  +  S+K+  l++l+  + e         l+ ++s   ldL+E ll   G +l++ r++g +++ + + k +             + + + s+ + +
  KOO24372.1 174 NEVIVDSAKMRELRRLLPELKEGG----HRCLIFSQSLEMLDLLEHLLgpSGLRLHYCRLDGgTPVAERQVKID-------------KFQAADSKIFAF 255
                 556677999999999999999888....6667777777777******94345599999*997245566566666.............223344556667 PP

                 EESS---TTTS--TT-S-EEEEEE-SST--TTSHHHHHHH--------.--EEEEEETTSHHHHHHHH CS
      HDA2-3 180 lsttrqltkdksllenikfdliiafDssvdtsspsveslrtqnrkknk.lpiirlvpinSieHvkLcf 246
                 l +tr      +  + + +d +i  D + +++ +     r ++  ++  + +++lv+  ++e    + 
  KOO24372.1 256 LLSTRAG---GQGINLTAADTVILHDLDWNPQLDRQAVDRAHRLGQRRaVTVYKLVTASTVEESIVQL 320
                 7777666...4456777889999999999999988887777764433338899999999999765555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (399 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       493  (0.0274974); expected 358.6 (0.02)
Passed bias filter:                      354  (0.0197445); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.46u 0.25s 00:00:00.71 Elapsed: 00:00:00.39
# Mc/sec: 3077.16
//
Query:       KOO24373.1  [L=287]
Description: retinaldehyde-binding protein 1 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      4e-12   46.1   0.0    5.9e-12   45.6   0.0    1.2  1  CRAL_TRIO  CRAL/TRIO domain


Domain annotation for each model (and alignments):
>> CRAL_TRIO  CRAL/TRIO domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.6   0.0   3.3e-16   5.9e-12      18     159 .]     108     251 ..      96     251 .. 0.81

  Alignments for each domain:
  == domain 1  score: 45.6 bits;  conditional E-value: 3.3e-16
   CRAL_TRIO  18 grpvlylrlgrfdpk..klsleelvralvlvlerllkeleedgqvegvtvviDlkgls...lskmlwkpisllkkilkilqdnyperlgkilivnaPkl 111
                 g  vl+l   + +p   k+++ +++r+ v+ + +l+ + e+  q++gv+++ +l+++    l+ m   ++  ++   ++++   p rl+ ++ ++ P++
  KOO24373.1 108 GELVLLLDGVKLTPYakKFTMTDMLRFSVFYMSKLMVSEET--QINGVIILENLHNYPmlaLNSMKGGSLAGIRASFEWMH-LSPLRLRGLYAIKQPWY 203
                 55555555555555566999**************9966666..***************55555666555777788888886.67*************** PP

   CRAL_TRIO 112 fkfafklvkpfldektreKikfvspsnteatleky.idpeqlpkelGGt 159
                 + +++ l +pf++ k+re++ + ++ +t+a le     peq+p e+GGt
  KOO24373.1 204 IGMMLGLTRPFMPRKLRERVYLFGE-DTSAMLEAAgLTPEQVPPEYGGT 251
                 ***********************55.7756665433789*********7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (287 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       397  (0.0221429); expected 358.6 (0.02)
Passed bias filter:                      347  (0.0193541); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.24s 00:00:00.64 Elapsed: 00:00:00.38
# Mc/sec: 2292.10
//
Query:       KOO24374.1  [L=558]
Description: carboxylesterase type b [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.5e-78  264.2   0.0    3.4e-78  263.8   0.0    1.1  1  COesterase     Carboxylesterase family
    6.5e-06   26.1   0.0    5.6e-05   23.1   0.0    2.2  1  Abhydrolase_3  alpha/beta hydrolase fold
  ------ inclusion threshold ------
        4.2    7.9   8.4        5.2    7.6   6.8    2.0  1  Abhydrolase_6  Alpha/beta hydrolase family


Domain annotation for each model (and alignments):
>> COesterase  Carboxylesterase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  263.8   0.0   5.7e-82   3.4e-78       4     489 ..      19     524 ..      16     542 .. 0.88

  Alignments for each domain:
  == domain 1  score: 263.8 bits;  conditional E-value: 5.7e-82
                 EEEETTEEEEEEEEEESTCSEEEEEEEEESSB---GGGTTS--BE.----SS.EEECBS---BESEECSSSSSCGHHCHHHBES---EEEEEEESSSSS CS
  COesterase   4 vvetslGkvrGkrvklksekevdaFlGiPYAepPvgelRFkkPep.aepwtg.vrdAtkfspaCpqnaeksekeekeleawvsEDCLyLnvytPkekke 100
                  v+t lG+vrG+  +     +++ FlGiPY+++    +RF++++p ++ + + ++dAt f+paC+q+ +++ +  +      +  C  Ln++ P+    
  KOO24374.1  19 DVRTALGTVRGNGFP-----TFQEFLGIPYGTA----ERFEPAVPrSKGFDQnPLDATYFGPACLQTLTNVTTYGS------EYSCHVLNIWRPAGV-G 101
                 5999***********.....8999********9....9*******76667667**************988777653......457*********997.5 PP

                 TTSSEEEEEEE--STTTS-BGCGS-THHHHHHHTSEEEEE----HHHHH-B-SS....TTSBS-HHHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHH CS
  COesterase 101 akkklPVlVwihGggfqtgsaseydgsaLaaegnvivVtinYRlGvlGFlstgd....eeapGNvGllDqvlALrWVkenIasFGGdpervtlfGesAG 195
                    +lPVl ++ Gg   +g a+ y++s +a+ ++ ++ +inYR+G++GF+++++     e +GN++l D+++ALr++++++a FGGdp+r tlfG+s+G
  KOO24374.1 102 PGANLPVLLFVPGGTNDFGEAEPYNASIMASDQHAVICSINYRVGPFGFVALKEqalaGEPTGNFALTDIQAALRFLRQHVADFGGDPKRLTLFGQSSG 200
                 67777***********************************************87344456689************************************ PP

                 HHHHHHHHHSGGGTTSBSEEEEES--TTSTTTSBSHHHHHHHHHHHHTTS-CSSHHHHHHHHHCS-HHHHHHCCGG..SSSSSSTTC-SSS-B--SSSS CS
  COesterase 196 aasvsllllsplsrglfkraIlqSGsalspwaiqkkarkrakklakkvgckassskelveclrsksaeelldaqek..aleasssklvsfaPvvdgdfl 292
                 + +v l+++ p s+gl + +I+qSG   +     +k++ ++++la++++c+++  k++  cl   + +el+ aq     +    +  +s++P+vdg++l
  KOO24374.1 201 GGLVLLHTVLPSSSGLLEGVISQSGDLGAR--PLDKSLGVTETLAERLNCTQKGFKSTRACLVAATGDELVYAQGVtcITPNACNAATSWSPTVDGALL 297
                 *************************65544..33458*************************************9977778888999************ PP

                 SS-HHHHHHCGC..CSEEEEEEETTTTHHHHCCHSTTTSSSSHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHSTTTSSTCHHHHHHHHHHHHHHHH CS
  COesterase 293 pekPeellkseg..kvplliGvnkdegllflaylldkeksvkkkeeklsesllkdelyleaekkeelseaikeeytdeadrddaeksrkallelltdvl 389
                 p++P+ l k  +  +  + +G n++++ lf+ ++ +           + ++ ++  l  +a+++ +l++a++  y   + +++++   + +    +d  
  KOO24374.1 298 PDDPLVLAKAGQvnPLAVALGANTNDSYLFIMNTGP-----------IGRTEYEAALLAAARGNVTLARALLALYP--PRDNRTDDHVDLMGWWSSD-R 382
                 *********988999****************95444...........567777777888888899**********7..5555555555555555555.6 PP

                 THHHHHHHHHHHH...HTT-SEEEEEEE--STTSSS........TTTGSSBTTTTHHHHTTGGGTSGCS....................S-HHHHHHHH CS
  COesterase 390 fkapvlrtaklha...srgspvYlYsfdyrnssskk........pkwmgvvhgdeleyvfglpllekee....................ftkedeklsr 457
                 + ++++rta + a    ++ +v+lY+++y  +s++         ++  g+vh+de+++vfg+p++ +                      f++ +  ++r
  KOO24374.1 383 MLCGLRRTAAAFAaapPTKGQVHLYRYNYFFQSNRVctaasnwhDPSWGSVHQDEVSFVFGQPIFMNIGytncsvpgwsgfdrscldchFNATEAAFAR 481
                 78********99977777888**********998888887766647889****************9988999****************77777****** PP

                 HHHHHHHHHHHHSSTTS...........TTSS----B.TTTBE CS
  COesterase 458 kmmtywtnFaktgnPnk...........eeeekWpkytkeeek 489
                  + ++wt+Fa +g+P             + + +Wp++ +  ++
  KOO24374.1 482 AVGRLWTSFAASGDPGVregiergevqeAADAEWPRFGAGGRN 524
                 ***************9999999999998899999999554444 PP

>> Abhydrolase_3  alpha/beta hydrolase fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.1   0.0   9.3e-09   5.6e-05      40      88 ..     159     207 ..     114     224 .. 0.82

  Alignments for each domain:
  == domain 1  score: 23.1 bits;  conditional E-value: 9.3e-09
                    TTTS-TTHHHHHHHHHHHHHHHTHHHHTETTCEEEEEEETHHHHHHHHH CS
  Abhydrolase_3  40 APehpfPaavedalaalrwlaeqawelgadpsrivlaGdSaGGnlaaav 88 
                    A e     a+ d+ aalr l+++ +++g dp+r++l+G+S GG l++  
     KOO24374.1 159 AGEPTGNFALTDIQAALRFLRQHVADFGGDPKRLTLFGQSSGGGLVLLH 207
                    44555567999************99********************8755 PP

>> Abhydrolase_6  Alpha/beta hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.6   6.8   0.00087       5.2      41      96 ..     162     286 ..     109     410 .. 0.47

  Alignments for each domain:
  == domain 1  score: 7.6 bits;  conditional E-value: 0.00087
                    GGCS--HHHCHHHHHHHCCTT......TTSEEEEEETCHHHHHHHHHHCC.........EEEEES-.............................. CS
  Abhydrolase_6  41 dpppldledladlaalldelaa....gggpvvlvGHSlGGalalaaapla.......lvvgvlldp.............................. 95 
                    ++  ++l+d+++ +++l+  +a    ++++  l+G S GG l+l+   ++       l++gv+  +                              
     KOO24374.1 162 PTGNFALTDIQAALRFLRQHVAdfggDPKRLTLFGQSSGGGLVLL---HTvlpsssgLLEGVISQSgdlgarpldkslgvtetlaerlnctqkgfk 254
                    4445666665444444444444776688999********999999...664445566444422222344444444444444444444444444444 PP

                    ................................ CS
  Abhydrolase_6  96 ...............................p 96 
                                                   +
     KOO24374.1 255 straclvaatgdelvyaqgvtcitpnacnaaT 286
                    44444444455555555544444333333330 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (558 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       262  (0.0146132); expected 358.6 (0.02)
Passed bias filter:                      246  (0.0137208); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.54u 0.26s 00:00:00.80 Elapsed: 00:00:00.44
# Mc/sec: 3850.94
//
Query:       KOO24375.1  [L=540]
Description: malonyl- decarboxylase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.9e-72  243.9   0.0    3.8e-72  243.0   0.0    1.5  1  MCD       Malonyl-CoA decarboxylase C-terminal domain
    5.5e-11   42.4   1.2    3.9e-10   39.7   1.2    2.5  1  MCD_N     Malonyl-CoA decarboxylase N-terminal domain


Domain annotation for each model (and alignments):
>> MCD  Malonyl-CoA decarboxylase C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  243.0   0.0   4.2e-76   3.8e-72       1     257 []     200     501 ..     200     501 .. 0.87

  Alignments for each domain:
  == domain 1  score: 243.0 bits;  conditional E-value: 4.2e-76
                 GG-EEEEESTT.SBHHHHHHHHHH--TT--SSHHHHHHCC.STTEEEEEEEBTTCTTSESEEEEEEEESS--S-CHHHHSTTS--.............. CS
         MCD   1 gfLelrritwe.spaslleklikyEavHeirdwedlkrRl.dsdRrcfaffHpalpdePlifvevAlvkeiaksiqelldeeaea.............. 83 
                 g+L+l+r+twe +pa+lle+++ yE vH+ ++w+dl++Rl +++Rr+faf+Hp+lp ePl+fv+vAlv+++++ ++++l +  +               
  KOO24375.1 200 GLLRLERLTWEhTPAALLERIMAYERVHPFSGWDDLRTRLdGPHRRLFAFLHPRLPGEPLVFVQVALVSHVPTRLRDVLPRGLPLsprtargspaeaga 298
                 78********879***************************999************************************99988888999999999877 PP

                 .--GGG-SEEEEEEEEE--CCCTTS--HCHHHHHHHHHHHHH-TT--EEEEEE--TTSHHHHHHH..............CCGCC-TT--HHHHCCHGGC CS
         MCD  84 .edaekattAifysisntqkGLrgislGnfLiKrvveelkrelpklktfatLsPiPgfrkwlkre..............lkkesealleeeeaealael 167
                  e   + ++A fy+is+   GLrg+ +G +LiK+v+++l++  p l+tf+tLsP+Pgfr+wl+++              +           +++    +
  KOO24375.1 299 tEVGLTPRVACFYTISSPHMGLRGVPIGGLLIKHVLSSLAASEPALDTFVTLSPVPGFRSWLEARlarhvaaqdgaagrR-----------THDG---A 383
                 433456789******************************************************99555443333332221...........1111...1 PP

                 ........................................TSSTCTSSCHHHHHHHHHHHHHHHHHHHT-B-TTSBSSCCHHHHHCTT-EEEEEETTS- CS
         MCD 168 ............................eaeaakllkklleeeewaedeelaeklkevllrlaarYllkekrkkraldpvarFHlgnGArlerlnwlad 238
                                             +++  +++  ++e+ e  + + +  +++++ll l+arYl+ +++++raldpva FHl+nGA+l  + w a+
  KOO24375.1 384 stladevaadeavalnallealraaglvSSDPFEAVGPVHEDCEGDAASLALVAVRRALLCLCARYLCLATHRQRALDPVAAFHLRNGATLVSIHWGAN 482
                 2235556666777889999999999987667777777777777777778788999******************************************** PP

                 -SHHHHHHHTT-EEEEEE. CS
         MCD 239 tsekglkqslglmvnYlYd 257
                  s++g+++s+++mvnYlY+
  KOO24375.1 483 SSARGVRESCSMMVNYLYE 501
                 ******************6 PP

>> MCD_N  Malonyl-CoA decarboxylase N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.7   1.2   4.3e-14   3.9e-10      22      85 .]      93     197 ..      71     197 .. 0.87

  Alignments for each domain:
  == domain 1  score: 39.7 bits;  conditional E-value: 4.3e-14
                 H......HHHHHHHHHCSBHHHHHHHHHTTSTTHHHHHHHHHHHHHHHTTT-G...................................CHHHHHHHHHH CS
       MCD_N  22 e......kaeeeLrealeprrqeLlrrlnlapgGvkfLVdmRadllallkkek...................................elraldadleh 79 
                 +      +a +eLreal p   +++ rl++ p+G++fLV++Radlla++++++                                   + r+lda l++
  KOO24375.1  93 RgagallRARSELREALLPAHERIIERLAQQPDGLRFLVSLRADLLAAMAENRspadvavaavpgtapppsvggaasvpvmeedgereRWRELDASLRR 191
                 24566778999*****************************************99*********************************99********** PP

                 HHHHHT CS
       MCD_N  80 llssWF 85 
                  ls WF
  KOO24375.1 192 QLSIWF 197
                 *****9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (540 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       488  (0.0272185); expected 358.6 (0.02)
Passed bias filter:                      370  (0.020637); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.53u 0.27s 00:00:00.80 Elapsed: 00:00:00.41
# Mc/sec: 3961.30
//
Query:       KOO24376.1  [L=740]
Description: hypothetical protein Ctob_000996 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
  ------ inclusion threshold ------
      0.024   13.9   0.0       0.05   12.8   0.0    1.4  1  DXP_synthase_N   1-deoxy-D-xylulose-5-phosphate synthase
      0.043   13.6   0.1       0.12   12.2   0.1    1.7  1  XPC-binding      XPC-binding domain
        5.5    7.1   7.1        9.7    6.3   3.9    2.3  2  P_gingi_FimA     Major fimbrial subunit protein (FimA)


Domain annotation for each model (and alignments):
>> DXP_synthase_N  1-deoxy-D-xylulose-5-phosphate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0   8.3e-06      0.05      77     144 ..     166     235 ..     160     244 .. 0.82

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 8.3e-06
  DXP_synthase_N  77 iltgRk.dkfktlrqkgGlsgfpkrsEseyDafeagHsstsisaalGlavardlkg.ekkkvvaviGDga 144
                     ++t R+ ++ ++ r ++G+ g  +  Es+  ++eag ++  +s  lG+ +a++ +   ++  v v G ++
      KOO24376.1 166 VVTARTiEAHTEARAEKGIEGILSAVESTLSQLEAGDAAELVSGVLGIEAAATNEAtIRQCHVLVFGPTS 235
                     5777872344568***********************************9998777624566677777666 PP

>> XPC-binding  XPC-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.1   1.9e-05      0.12       1      51 [.     590     641 ..     590     646 .. 0.90

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 1.9e-05
  XPC-binding   1 LefLrnnpqFqqlRqlvqqnPql.LqplLqqlaqsnPqllqlIqqnqeeFlq 51 
                  Le Lr+++q  +l +++++ P+l L plL ql + + +l+   +++ +++ +
   KOO24376.1 590 LERLRSDAQAMHLCSILRERPSLlLGPLLPQLERLDGALFAFVHKHMQALAA 641
                  899*******************7258******************99998865 PP

>> P_gingi_FimA  Major fimbrial subunit protein (FimA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.2   0.1     0.061   3.7e+02      21      59 ..     215     251 ..     212     271 .. 0.59
   2 ?    6.3   3.9    0.0016       9.7      11      72 ..     337     392 ..     331     453 .. 0.77

  Alignments for each domain:
  == domain 1  score: 1.2 bits;  conditional E-value: 0.061
                   S-CCCTTE-SEEEEEEEETTSCCEEEEEEEEESTTCCEE CS
  P_gingi_FimA  21 tttkdEakInsLtvyVFnekgelvskkkelkvsgdgsea 59 
                   ++ ++Ea I   +v+VF  ++++  +++ ++++g ++ +
    KOO24376.1 215 AAATNEATIRQCHVLVFG-PTSIN-TPEMQQAAGGTQVE 251
                   456799***********9.33333.33333333333333 PP

  == domain 2  score: 6.3 bits;  conditional E-value: 0.0016
                   S-S-BGGGB-S-CCCTTE-SEEEEEEEETTSCCEEEEEEEEESTTCCEEEEEE.EEEEEEEEC CS
  P_gingi_FimA  11 akatagtraatttkdEakInsLtvyVFnekgelvskkkelkvsgdgseaiknv.ttiadipvt 72 
                   a+a+a ++a+++   E+ I +  ++VF +  e++++ +el++  dg ++ +++ t       +
    KOO24376.1 337 AAADAQAAANAQAGFEETIATSNAMVFGAQAEAEVDEVELESRADGVSEAETAeT-------E 392
                   3334444444444489***********************************9942.......2 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (740 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1405  (0.0783647); expected 358.6 (0.02)
Passed bias filter:                      426  (0.0237604); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.74u 0.28s 00:00:01.02 Elapsed: 00:00:00.43
# Mc/sec: 5143.37
//
Query:       KOO24377.1  [L=377]
Description: alpha galactosidase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.6e-50  171.2   4.7    7.1e-50  169.8   4.7    1.6  1  Melibiase_2     Alpha galactosidase A
    7.1e-12   45.2   0.0    1.4e-11   44.3   0.0    1.5  1  Melibiase_C     Alpha galactosidase C-terminal beta sandwich 
    1.7e-06   27.3   0.2    3.7e-06   26.1   0.0    1.5  2  Melibiase       Melibiase
      0.007   15.7   0.0     0.0098   15.2   0.0    1.1  1  Glyco_hydro_97  Glycoside hydrolase 97


Domain annotation for each model (and alignments):
>> Melibiase_2  Alpha galactosidase A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  169.8   4.7   1.6e-53   7.1e-50       2     284 .]       5     289 ..       4     289 .. 0.86

  Alignments for each domain:
  == domain 1  score: 169.8 bits;  conditional E-value: 1.6e-53
                  --EEEESHHHHTT---TTTSTTTSSSHHHHHHHHHHHHHTTHHHHT--EEE--SS-B-SS--TTS---B-TTTSTTHHHHHHHHHHHTT-EEEEEEES CS
  Melibiase_2   2 ppmgwlawerfrcnvdceedpenciseklfmeladvlaedgykdlgyeyviiddcwlakerdkegrlqadpkrfpsgikkladyvhskglklgiyadl 99 
                  pp+gw +w        c +  + c   + ++++a+ ++++g + lgye++ +ddcw   +rd +grl ++++ fp+g+  + dyvhs glk+g+y+ +
   KOO24377.1   5 PPLGWQTWCSAG---VCGT--DHCFDYQ-IKDTAKAMVDNGMHALGYEWILLDDCWH-PSRDVDGRLVPHKEFFPDGMVPVIDYVHSLGLKFGLYTSV 95 
                  899999995432...2433..4687766.699************************7.68************************************** PP

                  SSB-TTS..SB--TTTHHHHHHHHHHHT--EEEEE-TSSSHHHHHHHHHHHHHHHHHTTS--EEE.E-HHHHH.TTTS---HHHHHHH-SEEE-SS-- CS
  Melibiase_2 100 gtktcag..ypgslkyleidaktfadwgvdllkldgcysnleelaegykelslalnktgrsivys.cewplyavvkkkkvdyteiaktcnlwrnyddi 194
                  g ktc g   pgs+ y+++da+ fa+wgvd++k+d c +  ++ aeg+ ++s+aln+tgr+i+   c  p ya    +++ +     + ++wr   d 
   KOO24377.1  96 GDKTCHGgwSPGSYGYYDQDAQLFASWGVDYVKIDYCGD--HDSAEGHANFSRALNQTGRPILLElCRGP-YA----SQPGWGYAPAIAQVWRATGDH 186
                  *****87545*************************9976..57899****************99735555.65....578888889999********* PP

                  -SSHHHHHHHHHHHHHTHHHHTTT-BTTBEEE---B-TTSSSS..............-HHHHHHHHHHHHHTT--EEE-S-TTS--HHHHHHHT-HHH CS
  Melibiase_2 195 qdswdsvkeivdyfaenqdvlvevagpgkwndpdmliignfgl..............sldqqraqmalwailaapllmsndlrkispeakalllnkev 278
                  +d++ds    v+ ++++  v  +++ p +w   dml+ g  g               s  + r++++l+++l+apl++ +d+r +++  ++l+ln+++
   KOO24377.1 187 KDAFDSTLAQVKALSDH-SVAGSYSKPYGWATGDMLMTGGEGCklydahtpkhcpkqSDAEYRTEFTLYSVLSAPLMIGTDIRLMTSIMNELILNQDA 283
                  ********999988776.5678899*************986642222222222222255567899********************************* PP

                  HHHHT- CS
  Melibiase_2 279 iainqd 284
                  +++nqd
   KOO24377.1 284 LRVNQD 289
                  *****9 PP

>> Melibiase_C  Alpha galactosidase C-terminal beta sandwich domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.3   0.0   3.1e-15   1.4e-11       4      70 ..     303     373 ..     301     374 .. 0.89

  Alignments for each domain:
  == domain 1  score: 44.3 bits;  conditional E-value: 3.1e-15
                  EEEEEEE-SSS-EEEEEEE....-E..EEEE-GTT--S-..EEEEETTTTEE..E-TT--EEEE-TT-EEEEE CS
  Melibiase_C   4 lqvWakpLsdGdvaValfN....rttvtvdwsdlglpgsssysvrDlWtgkd..lgtgsssaevpphgvvllr 70 
                  ++ ++++LsdG+va+al N    ++t+ + + ++g++g+   s+rD+W+ kd  +++g++sa v+ph++ +l 
   KOO24377.1 303 QDAYVRKLSDGKVAIALPNlgtgNATMVACLPEVGIMGR--ASIRDVWAVKDegVFSGNYSAIVQPHDTLFLL 373
                  6889***************98543478888889******..***********7777*************9986 PP

>> Melibiase  Melibiase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.1   0.0   8.3e-10   3.7e-06      52     123 ..      23      92 ..      20      95 .. 0.88
   2 ?   -3.7   0.0      0.96   4.3e+03     176     191 ..     116     131 ..     112     135 .. 0.82

  Alignments for each domain:
  == domain 1  score: 26.1 bits;  conditional E-value: 8.3e-10
   Melibiase  52 yfdfn.edklkeladea.aklGielfvlDDGWfgkrnddnssLGDWfvneeklpdgleelakevhekglkfGlW 123
                  fd++ +d+ k+++d+  ++lG e + lDD W  +r+ d    G  + ++e +pdg+ +++++vh++glkfGl+
  KOO24377.1  23 CFDYQiKDTAKAMVDNGmHALGYEWILLDDCWHPSRDVD----GRLVPHKEFFPDGMVPVIDYVHSLGLKFGLY 92 
                 58887467888999985378****************999....6678999**********************98 PP

  == domain 2  score: -3.7 bits;  conditional E-value: 0.96
   Melibiase 176 dnllkeaqidyvkWDm 191
                 ++l ++ ++dyvk D+
  KOO24377.1 116 AQLFASWGVDYVKIDY 131
                 68889999*****996 PP

>> Glyco_hydro_97  Glycoside hydrolase 97
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.0   2.2e-06    0.0098      35     140 ..      30     137 ..       9     153 .. 0.77

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 2.2e-06
  Glyco_hydro_97  35 etvkryiDfA.aengleyvlvegwdegWeekkkkekefdftkpypdfdleelvaYakekgvgvelwlhsetsgnvan....lekqldkafklyek 124
                     +t+k ++D    + g+e +l+   d  W+ +   + +    k+     +  +++Y ++ g +  l+++   +++            d+  +l+++
      KOO24377.1  30 DTAKAMVDNGmHALGYEWILL---DDCWHPSRDVDGRLVPHKEFFPDGMVPVIDYVHSLGLKFGLYTSVGDKTCHGGwspgSYGYYDQDAQLFAS 121
                     567788887525789999999...9999976666666666777777789999********999998876654444335554444479999***** PP

  Glyco_hydro_97 125 lGvkgvKvdfvgrddq 140
                     +Gv+ vK+d+ g++d 
      KOO24377.1 122 WGVDYVKIDYCGDHDS 137
                     ************9765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (377 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       327  (0.0182386); expected 358.6 (0.02)
Passed bias filter:                      294  (0.016398); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.48u 0.25s 00:00:00.73 Elapsed: 00:00:00.42
# Mc/sec: 2710.30
//
Query:       KOO24378.1  [L=503]
Description: maf family protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.3e-32  111.3   0.0    6.4e-32  110.7   0.0    1.3  1  Maf              Maf-like protein
    7.9e-08   32.6   0.0    1.4e-07   31.8   0.0    1.4  1  Acetyltransf_7   Acetyltransferase (GNAT) domain
    1.5e-07   31.7   0.0    2.7e-07   30.8   0.0    1.4  1  Acetyltransf_1   Acetyltransferase (GNAT) family
    5.8e-07   29.5   0.0      1e-06   28.7   0.0    1.4  1  Acetyltransf_10  Acetyltransferase (GNAT) domain
     0.0092   16.4   0.2      0.018   15.5   0.2    1.4  1  zf-RING_14       RING/Ubox like zinc-binding domain


Domain annotation for each model (and alignments):
>> Maf  Maf-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  110.7   0.0   1.8e-35   6.4e-32       1     165 [.       3     195 ..       3     196 .. 0.92

  Alignments for each domain:
  == domain 1  score: 110.7 bits;  conditional E-value: 1.8e-35
                 EEEEE---HHHHHHHHCT-.E...EEE------.......HHHHHHHHHHHHHHHHH...........TCEEEEEEEEEE...CE---SSHHHHHHHHH CS
         Maf   1 kliLASaSprRkelLeqlg.f...evvpsdvde.......aeelvlrlAeaKaeava...........alvigaDtvvvl...ilgKPkdeeealemLk 74 
                 +l+L+S+S  R++l+e+   +   +  ++d+de       a++l++ +A+aKa+a++           al+i+ D+vvv+   i +KP++e+ea+++L 
  KOO24378.1   3 RLVLGSSSAFRRALFEEHFpLersSFRSPDIDEnairhtdAQTLTRLIANAKADALVeqmlsedpaadALLICMDQVVVCdgcIREKPTSEAEARRFLA 101
                 69***************75524458889****9*****9988889999******999**********999*********96667*************** PP

                 HH.TTSEEEEEEEEEEEE..EEE..EEEEEEEEEE----HHHHHHHHHCTSGCCSTTS--TTCGGGGGCEEEECS-HHHHHT--HHHHHHHHCC CS
         Maf  75 kl.sgrthevvTgvavlk..ekevksfvettevtfkelsdeeieaYvatgepldkAGaygiqgllglalverieGsysnVvGLPlaellelLke 165
                 ++ +g++ e+v g++v +  ++e+    e ++v f+++++++i++ +a+g+ ++++Ga++i+++l + +v+r+eG  ++V+GLPl++l++lL+e
  KOO24378.1 102 SYqAGSKAECVNGCVVHNlkTGERRAANEIASVSFDSFPESTIDEAIAQGRIYNSSGAFAIDDPLFAPYVTRLEGARDAVIGLPLRTLRRLLDE 195
                 **558999********99*9667788899***************************************************************87 PP

>> Acetyltransf_7  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.8   0.0   3.9e-11   1.4e-07       2      76 .]     385     480 ..     384     480 .. 0.77

  Alignments for each domain:
  == domain 1  score: 31.8 bits;  conditional E-value: 3.9e-11
                     TEEEEEEEET..TEEEEEEEEEEES...........TCTEEEEE-GGGTTSSHHHHHHHH.TT....SEEE...EEEEEETHHHHHH.HHHHTTE CS
  Acetyltransf_7   2 kgevfVaedd..gkivGfialslld...........aeitrlaVdpeyrgkGiGraLlea.ae....kgii...leqlelnaekaik.fYeklGF 74 
                     +++++Va dd  g+++G++a+++ +           ae+ r+ V+  +rg G+++aL +  ++     g++   le+++l+a  a++ +Y +lGF
      KOO24378.1 385 GSCFWVAIDDasGQVCGTVAVQRASapwrgaadgtdAELRRMSVASWARGTGVAKALFAElKRfcdqAGYHrvvLETSTLQA-DAHGrLYPSLGF 478
                     679*******************999*****99998888888*****************853224444554333222334433.45657******* PP

                     EE CS
  Acetyltransf_7  75 ee 76 
                     e+
      KOO24378.1 479 EP 480
                     95 PP

>> Acetyltransf_1  Acetyltransferase (GNAT) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.8   0.0   7.5e-11   2.7e-07      22     117 .]     375     478 ..     351     478 .. 0.81

  Alignments for each domain:
  == domain 1  score: 30.8 bits;  conditional E-value: 7.5e-11
                     HHHHHHHHSTTCEEEEEEET..TEEEEEEEEEEEET.....TSTTEEEEEEEEESGGGTTSSHHHHHHHHHHHHHHHTTESEEEEEEETT.EHHH CS
  Acetyltransf_1  22 eefeesfsleaegllvaeed..geliGfisllkipd.....ekggvayieslaVspeyrgkGlGsaLlealeerareegikkivlaveed.ndaa 108
                       +++++s + ++++va +d  g++ G++ +           +g  a+++++ V++ +rg G+++aL  +l +++ + g++++vl+++    da 
      KOO24378.1 375 SPYAHYLSSPGSCFWVAIDDasGQVCGTVAVQRASApwrgaADGTDAELRRMSVASWARGTGVAKALFAELKRFCDQAGYHRVVLETSTLqADAH 469
                     226666777899****88887999*****7766666777999999****************************************9988845555 PP

                     HHHHHHTTE CS
  Acetyltransf_1 109 irlYeklGF 117
                      rlY  lGF
      KOO24378.1 470 GRLYPSLGF 478
                     677766887 PP

>> Acetyltransf_10  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.7   0.0   2.8e-10     1e-06      28     121 ..     383     493 ..     364     499 .. 0.78

  Alignments for each domain:
  == domain 1  score: 28.7 bits;  conditional E-value: 2.8e-10
  Acetyltransf_10  28 egealllvaeeg..gkivGvielrdgs............hisllfVdpeyrgqGigkaLleaveeeaekdgikleltvnasp....yavpfYek 103
                      ++   ++va ++  g+++G++++++ s            ++ ++ V++ +rg+G++kaL+ ++++ ++++g++ ++ ++ s+    +  ++Y +
       KOO24378.1 383 SPGSCFWVAIDDasGQVCGTVAVQRASapwrgaadgtdaELRRMSVASWARGTGVAKALFAELKRFCDQAGYH-RVVLETSTlqadAHGRLYPS 475
                      555667777655559999999996666699999999999**********************************.55555555401144689*** PP

  Acetyltransf_10 104 lGFkavgeeqeenGirfv 121
                      lGF++v+ +  + +++ +
       KOO24378.1 476 LGFEPVKVKPLFGNVKST 493
                      *****9877666666655 PP

>> zf-RING_14  RING/Ubox like zinc-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.2   4.9e-06     0.018      25      67 ..      74     116 ..      59     124 .. 0.91

  Alignments for each domain:
  == domain 1  score: 15.5 bits;  conditional E-value: 4.9e-06
                 SSTT-BEEEHHHHHHHHHHHHHTT-SEEETTTEEE---TT--T CS
  zf-RING_14  25 eceerhviclecfkkycvsrlnerqfvqdpelGytlpcpagce 67 
                  c ++ v+c  c ++  +s+ + r+f+ + + G   +c++gc 
  KOO24378.1  74 ICMDQVVVCDGCIREKPTSEAEARRFLASYQAGSKAECVNGCV 116
                 5*****************************************6 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (503 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       721  (0.0402142); expected 358.6 (0.02)
Passed bias filter:                      483  (0.0269396); expected 358.6 (0.02)
Passed Vit filter:                        47  (0.00262145); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.56u 0.24s 00:00:00.80 Elapsed: 00:00:00.41
# Mc/sec: 3672.13
//
Query:       KOO24379.1  [L=557]
Description: vanin 2-like protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
      1e-10   41.4   0.0    1.6e-10   40.8   0.0    1.3  1  CN_hydrolase  Carbon-nitrogen hydrolase
    2.1e-07   31.1   4.8    6.4e-07   29.6   4.8    1.9  1  zf-RING_2     Ring finger domain
    0.00043   20.1   2.7    0.00098   19.0   2.7    1.7  1  zf-C3HC4      Zinc finger, C3HC4 type (RING finger)
     0.0022   17.8   5.5      0.016   15.1   5.7    2.2  2  zf-C3HC4_3    Zinc finger, C3HC4 type (RING finger)
     0.0022   18.0   2.6     0.0036   17.3   0.8    2.2  2  zf-RING_UBOX  RING-type zinc-finger
      0.006   16.5   3.1      0.014   15.4   3.1    1.7  1  zf-RING_5     zinc-RING finger domain
  ------ inclusion threshold ------
      0.038   14.0   0.5      0.067   13.2   0.5    1.3  1  NrfD_2        Polysulfide reductase


Domain annotation for each model (and alignments):
>> CN_hydrolase  Carbon-nitrogen hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.8   0.0   6.3e-14   1.6e-10      17     170 ..       2     193 ..       1     212 [. 0.81

  Alignments for each domain:
  == domain 1  score: 40.8 bits;  conditional E-value: 6.3e-14
                   HHHHHHHHHHHHHHTTESEEEEETTTTTBS..............SSHHHHHHHHB.......HSSSHHHHHHHHHHHHHTEEEEEEEEEEEC..... CS
  CN_hydrolase  17 nlqklleliaeAarkgadLivlPElfitgy..............keeahfleaAe.......aglgetlallaalarkngiavviglierel..... 87 
                   n++++ e + +Aa +ga+++v+PE fi  +               ++a++l+ A+         +++++ +la +a+k++ ++v+gl   +      
    KOO24379.1   2 NVKTADEWAGRAAAQGAQIVVFPEDFISSFggggphwrskyitpPNFAEPLPEAGitmcgadFKDSPVASALACIAKKHDLVLVVGLGITAPcvpkq 98 
                   677788888899****************99*******************************9779*********************55554455666 PP

                   ...........CTTEEEEEEEEEEEETTSEEEEEEE-SS--EECTTSCECCGHHTSCS....-SS..S-EEEETTEEEEEEEGGGGGSHHHHHHHHH CS
  CN_hydrolase  88 ...........tngklqayntavlldldgklvgkyrKlhLfpgeprpptaverelfep....gdg..ipvfdtpvgkiGaaiCyeigfpellralal 167
                              +  ++ ++ +a  + ++g+l+g+y+K+hL    +r++      ++++    + +   ++++t v+++G+ i  + +f+  ++ l  
    KOO24379.1  99 nafdgrllpcnERSHMGQFDGAAAFGRKGELLGSYSKSHLAY-TWRRNAD----VWMEaadaQPAffDAPLSTGVVRFGFIIDNDANFGDPMLSLLE 190
                   68*************************************982.3333333....3333322233232245567777889988888888877777666 PP

                   TT- CS
  CN_hydrolase 168 kga 170
                   +g+
    KOO24379.1 191 HGV 193
                   665 PP

>> zf-RING_2  Ring finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.6   4.8   2.5e-10   6.4e-07       2      44 .]     443     497 ..     442     497 .. 0.85

  Alignments for each domain:
  == domain 1  score: 29.6 bits;  conditional E-value: 2.5e-10
   zf-RING_2   2 eCpICleelssads....vlllpCg.HvfhreClerwlrssst.......CPlCr 44 
                 eCp+Cle+++++      + ++ C+ H  + eC+++w + +         CP+Cr
  KOO24379.1 443 ECPVCLEPFEDGTPngrpYEVQGCQiHRLCVECAQQWREARADdvlqavlCPVCR 497
                 8********88777776433558**888*********88888889*********9 PP

>> zf-C3HC4  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.0   2.7   3.8e-07   0.00098       1      41 []     444     496 ..     444     496 .. 0.95

  Alignments for each domain:
  == domain 1  score: 19.0 bits;  conditional E-value: 3.8e-07
                 -TTT-S--SS-E.......E-TTS.--B-CHHHHHHHHC.....TSSB--TTT CS
    zf-C3HC4   1 CpiCleeakepn......elleCk.HsfCskCirkilks.....rkkvkCPlC 41 
                 Cp+Cle +++ +      e+  C+ H++C +C +++++       ++v CP+C
  KOO24379.1 444 CPVCLEPFEDGTpngrpyEVQGCQiHRLCVECAQQWREAraddvLQAVLCPVC 496
                 ***********************98*************99988878888***9 PP

>> zf-C3HC4_3  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.3   0.1     0.014        35      31      48 ..     435     452 ..     434     454 .. 0.78
   2 !   15.1   5.7   6.2e-06     0.016       4      45 ..     443     498 ..     440     501 .. 0.81

  Alignments for each domain:
  == domain 1  score: 4.3 bits;  conditional E-value: 0.014
                 HHHHHTT-B-TTT--B-- CS
  zf-C3HC4_3  31 ekllkrkkkCpiCrrpie 48 
                 e+l + + +Cp+C +p e
  KOO24379.1 435 EQLIATQIECPVCLEPFE 452
                 667778889****98876 PP

  == domain 2  score: 15.1 bits;  conditional E-value: 6.2e-06
                 B-TTTSS.......SBS-EEETTEE.EEEE-HHHHHHHHH.......TT-B-TTT-- CS
  zf-C3HC4_3   4 eCviCle.......rprnvvllpCg.HlvlCeeCaekllk.......rkkkCpiCrr 45 
                 eC++Cle       + r   +  C+ H  lC eCa+++++       +   Cp+Cr+
  KOO24379.1 443 ECPVCLEpfedgtpNGRPYEVQGCQiHR-LCVECAQQWREaraddvlQAVLCPVCRS 498
                 8******6666555555566666*7588.*********9899**************7 PP

>> zf-RING_UBOX  RING-type zinc-finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   0.8   1.4e-06    0.0036       1      27 [.     444     482 ..     444     494 .. 0.76
   2 ?   -0.7   0.1      0.58   1.5e+03       1       6 [.     493     498 ..     493     504 .. 0.86

  Alignments for each domain:
  == domain 1  score: 17.3 bits;  conditional E-value: 1.4e-06
  zf-RING_UBOX   1 CpIClelft......dPlv.l.pCG.HtFCreCl..w..e 27 
                   Cp+Cle+f+      +P   + +C+ H +C eC   w   
    KOO24379.1 444 CPVCLEPFEdgtpngRP-YeVqGCQiHRLCVECAqqWreA 482
                   ***********888888.55558***********543433 PP

  == domain 2  score: -0.7 bits;  conditional E-value: 0.58
  zf-RING_UBOX   1 CpICle 6  
                   Cp+C++
    KOO24379.1 493 CPVCRS 498
                   ****85 PP

>> zf-RING_5  zinc-RING finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   3.1   5.3e-06     0.014       1      43 [.     443     497 ..     443     498 .. 0.90

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 5.3e-06
   zf-RING_5   1 hCnkCfekl....skeekfyltsC.gHifCekClkkll.......ekeavCpiCr 43 
                 +C++C e++     + +++ +  C  H +C +C+++          + + Cp+Cr
  KOO24379.1 443 ECPVCLEPFedgtPNGRPYEVQGCqIHRLCVECAQQWRearaddvLQAVLCPVCR 497
                 6********99966666688999*77**********9999****999*******9 PP

>> NrfD_2  Polysulfide reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.5   2.6e-05     0.067     117     219 ..     226     327 ..     214     339 .. 0.84

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 2.6e-05
      NrfD_2 117 aGvlvlvsavvlaytGvllaanaarplwdhlllaiflasalllalallvllrnaeeaapglqvialielvlvvlypvalaknavdaalafelalafwGf 215
                 +G l++ sa+  +y   llaan     wd l + + +as+ +    l     +ae aa   + +a ++l++ +   v++ +  ++   + +l  ++   
  KOO24379.1 226 PGALAFQSALASGYGINLLAANGRMGAWDCLYPPL-PASSEICPSGLKCATDEAEAAAAKARAAASASLAVPIAMNVTMRSRYTNVFWSTALCTNGSSC 323
                 89****************************99975.9999999************99999999999**9999988888877777777777766666665 PP

      NrfD_2 216 vllG 219
                  +l 
  KOO24379.1 324 AVLS 327
                 5555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (557 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       407  (0.0227007); expected 358.6 (0.02)
Passed bias filter:                      315  (0.0175693); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.53u 0.24s 00:00:00.77 Elapsed: 00:00:00.43
# Mc/sec: 3873.43
//
Query:       KOO24380.1  [L=901]
Description: wd repeat-containing protein 66-like protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    7.5e-26   89.9  13.4    0.00096   19.9   0.3    9.3  9  WD40         WD domain, G-beta repeat
     0.0064   16.8   0.0        3.5    8.0   0.0    4.2  5  ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain
     0.0078   16.0   0.0       0.14   12.0   0.0    2.6  2  EF-hand_8    EF-hand domain pair
     0.0087   16.0   0.0       0.71    9.7   0.0    2.7  3  eIF2A        Eukaryotic translation initiation factor eIF2A
     0.0098   15.7   0.0      0.025   14.4   0.0    1.7  1  HELP         HELP motif
  ------ inclusion threshold ------
      0.023   14.6   0.0        1.4    9.0   0.0    2.8  2  EF-hand_6    EF-hand domain
       0.25   10.3   0.2        1.3    7.9   0.0    2.3  3  Ge1_WD40     WD40 region of Ge1, enhancer of mRNA-decapping p


Domain annotation for each model (and alignments):
>> WD40  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   0.1   4.1e-06     0.011       4      38 .]      53      90 ..      50      90 .. 0.87
   2 !    6.7   0.0    0.0057        14       9      27 ..     103     122 ..      94     143 .. 0.69
   3 ?    4.5   0.1     0.029        74      13      38 .]     216     244 ..     203     244 .. 0.73
   4 !   12.5   0.0   8.2e-05      0.21       9      38 .]     268     293 ..     261     293 .. 0.74
   5 ?   -0.9   0.0       1.4   3.7e+03       9      38 .]     375     405 ..     368     405 .. 0.76
   6 ?    5.8   0.0     0.011        27       8      34 ..     421     443 ..     415     445 .. 0.78
   7 !   12.6   0.0   7.9e-05       0.2       3      35 ..     453     486 ..     451     489 .. 0.84
   8 !   10.8   0.0   0.00029      0.73       4      33 ..     506     539 ..     503     544 .. 0.81
   9 !   19.9   0.3   3.7e-07   0.00096       7      38 .]     663     696 ..     655     696 .. 0.82

  Alignments for each domain:
  == domain 1  score: 16.6 bits;  conditional E-value: 4.1e-06
                EEEEESS.SSEEEEEEETTSSEEEEE..ETTSEEEEEE CS
        WD40  4 lrtltGH.ssvtslafspdgawlasG..sdDgtvriWd 38
                ++ l GH +++t+ + s d +++a++  + D  + +Wd
  KOO24380.1 53 QQLLQGHcNPITCTCASADRRLVATSdrGADSMLVVWD 90
                66689**999**************985546*******9 PP

  == domain 2  score: 6.7 bits;  conditional E-value: 0.0057
                 SS.SSEEEEEEETTSSEEEE CS
        WD40   9 GH.ssvtslafspdgawlas 27 
                  H  +v++++ spdg++l++
  KOO24380.1 103 PHpHGVHAMDMSPDGKYLVT 122
                 45337*************97 PP

  == domain 3  score: 4.5 bits;  conditional E-value: 0.029
                 EEEEE...EETTSSEEEEEETTSEEEEEE CS
        WD40  13 vtsla...fspdgawlasGsdDgtvriWd 38 
                 +  l    f p ++  ++++ Dg + +Wd
  KOO24380.1 216 IGTLTkstFLPGSTKAVTATADGDCVLWD 244
                 555556668899999999999*******9 PP

  == domain 4  score: 12.5 bits;  conditional E-value: 8.2e-05
                 SS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40   9 GH.ssvtslafspdgawlasGsdDgtvriWd 38 
                 G  +++  +     g++l+sG+ Dg+vr++d
  KOO24380.1 268 GAvTNILTV-----GKYLVSGGADGHVRFYD 293
                 333334555.....999************98 PP

  == domain 5  score: -0.9 bits;  conditional E-value: 1.4
                 SS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40   9 GH.ssvtslafspdgawlasGsdDgtvriWd 38 
                 G+  +v++la +p+ + +a  ++ g + +Wd
  KOO24380.1 375 GQdAPVHGLAAHPSLTRFAVTGKAGLLQLWD 405
                 6756699999999988887666688888887 PP

  == domain 6  score: 5.8 bits;  conditional E-value: 0.011
                 ESSSSEEEEEEETTSSEEEEEETTSEE CS
        WD40   8 tGHssvtslafspdgawlasGsdDgtv 34 
                 +GH     lafsp+g++la G   g +
  KOO24380.1 421 SGH----TLAFSPSGKFLAIGFTSGLL 443
                 566....89*********999656655 PP

  == domain 7  score: 12.6 bits;  conditional E-value: 7.9e-05
                 EEEEEESS.SSEEEEEEETTSSEEEEEETTSEEE CS
        WD40   3 clrtltGH.ssvtslafspdgawlasGsdDgtvr 35 
                  + t+++  +++t+ afs+d+++la+++ D+ v 
  KOO24380.1 453 EVATFKAAaGCITAAAFSHDSTYLATSDTDNCVG 486
                 57789988777**************998899885 PP

  == domain 8  score: 10.8 bits;  conditional E-value: 0.00029
                 EEEEESS.SSEEEEE...EETTSSEEEEEETTSE CS
        WD40   4 lrtltGH.ssvtsla...fspdgawlasGsdDgt 33 
                 +++++GH +++t+l+    s+ +a l+s+++D+ 
  KOO24380.1 506 VGKYRGHyKPITGLQfgeGSDGSARLFSCGEDRA 539
                 6789**********88887777777888988985 PP

  == domain 9  score: 19.9 bits;  conditional E-value: 3.7e-07
                 EESS.SSEEEEEEETTSSEEE.EEETTSEEEEEE CS
        WD40   7 ltGH.ssvtslafspdgawla.sGsdDgtvriWd 38 
                 l +H + v++l  s dg+wl+ +G+ D+++++W+
  KOO24380.1 663 LIAHpGEVSDLVASWDGQWLLtAGGHDRSIHMWN 696
                 679*888************9736778*******8 PP

>> ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.0       4.7   1.2e+04      38      53 ..     105     120 ..      79     122 .. 0.52
   2 ?    2.7   0.0      0.06   1.5e+02      50      68 ..     277     295 ..     271     317 .. 0.81
   3 ?   -1.9   0.0       1.6   4.1e+03      35      72 ..     374     411 ..     361     420 .. 0.83
   4 !    8.0   0.0    0.0014       3.5      43      86 ..     424     466 ..     415     472 .. 0.86
   5 ?   -2.0   0.0       1.8   4.6e+03      39      77 ..     668     707 ..     638     712 .. 0.75

  Alignments for each domain:
  == domain 1  score: -3.3 bits;  conditional E-value: 4.7
  ANAPC4_WD40  38 dsevrsLaWkpdgklL 53 
                   + v+++  +pdgk L
   KOO24380.1 105 PHGVHAMDMSPDGKYL 120
                  3345555556666655 PP

  == domain 2  score: 2.7 bits;  conditional E-value: 0.06
  ANAPC4_WD40  50 gklLavaysdgevrlldae 68 
                  gk L+ + +dg+vr++d e
   KOO24380.1 277 GKYLVSGGADGHVRFYDFE 295
                  99**************987 PP

  == domain 3  score: -1.9 bits;  conditional E-value: 1.6
  ANAPC4_WD40  35 dkedsevrsLaWkpdgklLavaysdgevrlldaesgkv 72 
                  +++d  v++La +p+ + +av  + g ++l d  ++++
   KOO24380.1 374 QGQDAPVHGLAAHPSLTRFAVTGKAGLLQLWDYAEKRL 411
                  45889999999999999999999999999999877665 PP

  == domain 4  score: 8.0 bits;  conditional E-value: 0.0014
  ANAPC4_WD40  43 sLaWkpdgklLavaysdgevrlldaesgkvvhslsvksekavtc 86 
                   La++p+gk+La+++  g +++l   + + v ++++++  ++t 
   KOO24380.1 424 TLAFSPSGKFLAIGFTSGLLKVLVGMTLEEVATFKAAAG-CITA 466
                  69*******************999999999999988877.5665 PP

  == domain 5  score: -2.0 bits;  conditional E-value: 1.8
  ANAPC4_WD40  39 sevrsLaWkpdgklL.avaysdgevrlldaesgkvvhsls 77 
                  +ev++L  + dg+ L   + +d ++++ ++  + +v + +
   KOO24380.1 668 GEVSDLVASWDGQWLlTAGGHDRSIHMWNVRPAALVATAK 707
                  6777777777887541566778888888888877777665 PP

>> EF-hand_8  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.6   0.0       0.2   5.2e+02      35      50 ..     329     344 ..     328     346 .. 0.88
   2 !   12.0   0.0   5.6e-05      0.14       3      46 ..     798     841 ..     796     849 .. 0.86

  Alignments for each domain:
  == domain 1  score: 0.6 bits;  conditional E-value: 0.2
   EF-hand_8  35 fDtdgdGkisfeEFcv 50 
                 +D   +G++s+ +F+v
  KOO24380.1 329 ADAAASGVLSCPDFVV 344
                 688899********97 PP

  == domain 2  score: 12.0 bits;  conditional E-value: 5.6e-05
   EF-hand_8   3 gkItreelrrilrilglkk...glseeevdilfrefDtdgdGkisfe 46 
                 ++ t++e+   +   + ++   g+s+e++ + f  + tdg+G++s e
  KOO24380.1 798 DSFTFDEFLALY---VNHRpilGVSKEQIADAFAVLATDGSGVLSRE 841
                 678*******88...444578***********************976 PP

>> eIF2A  Eukaryotic translation initiation factor eIF2A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.1   0.0      0.03        77     129     162 ..      91     124 ..      45     129 .. 0.84
   2 ?   -3.8   0.0       3.8   9.7e+03      76      99 ..     280     303 ..     279     307 .. 0.80
   3 !    9.7   0.0   0.00028      0.71      62     163 ..     380     481 ..     362     489 .. 0.74

  Alignments for each domain:
  == domain 1  score: 3.1 bits;  conditional E-value: 0.03
                 EEETTTTEEEEEEE-TT--EEEE-TTSSEEEEEE CS
       eIF2A 129 iwdvkkkkkiakaeaanatlvewspdgryvlTat 162
                  + ++ +k+ia+ +      ++ spdg+y++T +
  KOO24380.1  91 SYSTQPVKTIATPHPHGVHAMDMSPDGKYLVTLS 124
                 35566788888888888999************75 PP

  == domain 2  score: -3.8 bits;  conditional E-value: 3.8
                 EEESSSSCEEEEEECSCEEEEEEE CS
       eIF2A  76 viyGkmpakvslfdlkvkviskle 99 
                 ++ G ++ +v ++d + ++i+ +e
  KOO24380.1 280 LVSGGADGHVRFYDFEFRIIAWFE 303
                 578899999999999988887665 PP

  == domain 3  score: 9.7 bits;  conditional E-value: 0.00028
                 EEEEEE-TTSS-EEEEESSSSCEEEEEEC...SCEEEEEEEEES--EEEE-TTSSEEEEE-TTSSS-EEEEEETTTTEEEEEEE-T..T--EEEE-TTS CS
       eIF2A  62 ihdvaWspkskefaviyGkmpakvslfdl...kvkviskleeqkrNtiffspkgklvllaGfgnlaGeleiwdvkkkkkiakaeaa..natlvewspdg 155
                 +h +a  p+ ++fav  Gk+    +l+d    ++ ++ ++++ +  t+ fsp+gk+++++ f  ++G l+++   +++++a+++aa  + t   +s d+
  KOO24380.1 380 VHGLAAHPSLTRFAV-TGKAGL-LQLWDYaekRLLLMRMFDRLSGHTLAFSPSGKFLAIG-F--TSGLLKVLVGMTLEEVATFKAAagCITAAAFSHDS 473
                 555555555556654.454433.44444422247778888999999**********9984.4..6788***9999999999998763378999****** PP

                 SEEEEEE- CS
       eIF2A 156 ryvlTatt 163
                 +y++T+ t
  KOO24380.1 474 TYLATSDT 481
                 *****977 PP

>> HELP  HELP motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.4   0.0   9.9e-06     0.025      34      73 ..       8      47 ..       3      48 .. 0.95

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 9.9e-06
        HELP 34 ekLkLewvyGYrgkdcrnnlfllptgeivYfvAavvvlyn 73
                ++L+L+wv+G+  +    nl   ++  i Y  A  +++y+
  KOO24380.1  8 NALSLSWVFGFADRCPVTNLCDANRAAIFYASAHTGIIYD 47
                689************************************9 PP

>> EF-hand_6  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.5   0.0     0.068   1.8e+02      14      31 .]     755     771 ..     755     771 .. 0.92
   2 ?    9.0   0.0   0.00055       1.4       2      27 ..     823     848 ..     822     855 .. 0.88

  Alignments for each domain:
  == domain 1  score: 2.5 bits;  conditional E-value: 0.068
   EF-hand_6  14 dGkidaeElrkalrkalg 31 
                 +Gk+ ++El +++r +lg
  KOO24380.1 755 TGKVPMSELGNMMR-SLG 771
                 699***********.887 PP

  == domain 2  score: 9.0 bits;  conditional E-value: 0.00055
   EF-hand_6   2 lreaFklfDkdgdGkidaeElrkalr 27 
                 + +aF  + +dg+G +++e l+++l+
  KOO24380.1 823 IADAFAVLATDGSGVLSREALVRVLN 848
                 5689******************9998 PP

>> Ge1_WD40  WD40 region of Ge1, enhancer of mRNA-decapping protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.0       0.4     1e+03     188     217 ..     217     246 ..     208     269 .. 0.82
   2 ?   -3.9   0.0         2   5.1e+03     199     215 ..     277     293 ..     262     294 .. 0.81
   3 ?    7.9   0.0    0.0005       1.3     184     216 ..     457     490 ..     426     507 .. 0.84

  Alignments for each domain:
  == domain 1  score: -1.6 bits;  conditional E-value: 0.4
    Ge1_WD40 188 sliveaafspdGtalatasedGevkffqvy 217
                  ++++++f p  t   ta++dG   ++ v 
  KOO24380.1 217 GTLTKSTFLPGSTKAVTATADGDCVLWDVL 246
                 38999*****************99999886 PP

  == domain 2  score: -3.9 bits;  conditional E-value: 2
    Ge1_WD40 199 GtalatasedGevkffq 215
                 G  l    +dG v+f+ 
  KOO24380.1 277 GKYLVSGGADGHVRFYD 293
                 566777889******96 PP

  == domain 3  score: 7.9 bits;  conditional E-value: 0.0005
    Ge1_WD40 184 ieehs.liveaafspdGtalatasedGevkffqv 216
                 ++  + +i+ aafs d t lat+ +d  v  +++
  KOO24380.1 457 FKAAAgCITAAAFSHDSTYLATSDTDNCVGVYRL 490
                 4555559********************9998875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (901 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       300  (0.0167327); expected 358.6 (0.02)
Passed bias filter:                      273  (0.0152267); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.59u 0.27s 00:00:00.86 Elapsed: 00:00:00.41
# Mc/sec: 6582.91
//
Query:       KOO24381.1  [L=573]
Description: ubiquitin-conjugating enzyme e2 q2, partial [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.6e-08   33.2   0.0    1.3e-07   31.3   0.0    1.8  2  UQ_con     Ubiquitin-conjugating enzyme
     0.0034   17.1   0.0     0.0071   16.0   0.0    1.4  1  Prok-E2_B  Prokaryotic E2 family B
     0.0065   16.5   0.0      0.021   14.9   0.0    1.8  2  Cnd1       non-SMC mitotic condensation complex subunit 1
  ------ inclusion threshold ------
      0.031   14.5   2.3        2.1    8.8   0.0    4.0  4  HEAT       HEAT repeat
      0.053   13.8   0.0      0.096   13.0   0.0    1.4  1  RWD        RWD domain
      0.073   13.5   0.4      0.073   13.5   0.4    4.5  5  HEAT_2     HEAT repeats


Domain annotation for each model (and alignments):
>> UQ_con  Ubiquitin-conjugating enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.0       0.7   2.1e+03       1      33 [.     120     150 ..     120     153 .. 0.80
   2 !   31.3   0.0   4.4e-11   1.3e-07      49     112 ..     181     243 ..     179     255 .. 0.91

  Alignments for each domain:
  == domain 1  score: -1.7 bits;  conditional E-value: 0.7
                 HHHHHHHHHHHSTTTTEEEEEEETTEECEEEEE CS
      UQ_con   1 rlqkelkelakkkpsgisaklvddenlfewkvl 33 
                 rl kel+++  ++ +g++ +lv+d +l+ w+v 
  KOO24381.1 120 RLLKELRQV-CSSVNGLELELVND-DLQVWQVS 150
                 678888875.67788999999997.9****986 PP

  == domain 2  score: 31.3 bits;  conditional E-value: 4.4e-11
                 EEEE--TTTTTS--EEEESST-SCTTBETTSBB-CGGGSTTT--TTS.HHHHHHHHHHHHHHS-- CS
      UQ_con  49 lelefpedYPlkpPkvkfvtkifHPnvdksGevcldiLkeekWspal.tlesvllsiqsLlaepn 112
                 l+++fp+d+P++pP v + ++ +H     +G++c+++L   +W+p++ ++e+ l+++ ++l+++ 
  KOO24381.1 181 LQIRFPDDFPFTPPLVFCASPTLHSEYVFDGALCMEMLI--DWQPTYgNVETMLVQVTAFLSHSS 243
                 79*************************************..6***6549***********98764 PP

>> Prok-E2_B  Prokaryotic E2 family B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.0   2.4e-06    0.0071      29     109 ..     170     243 ..     155     253 .. 0.80

  Alignments for each domain:
  == domain 1  score: 16.0 bits;  conditional E-value: 2.4e-06
   Prok-E2_B  29 ssvktsggtvdlrlvypdsfpllppavflqdpeqlkllpHintfggaLClleeeldldewdpngsvadvleqlqqvLnegi 109
                 s+ k + +++ l++ +pd+fp+ pp vf + p+    l+  + f+gaLC+   e  +d   + g+v  +l q+ + L  + 
  KOO24381.1 170 SESKDDLVPLVLQIRFPDDFPFTPPLVFCASPT----LHSEYVFDGALCM---EMLIDWQPTYGNVETMLVQVTAFLSHSS 243
                 4445577899999********************....4556678******...7888877778888888888888887554 PP

>> Cnd1  non-SMC mitotic condensation complex subunit 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.7   0.0       3.6   1.1e+04     120     152 ..     215     246 ..     213     249 .. 0.75
   2 !   14.9   0.0     7e-06     0.021      21      73 ..     337     391 ..     330     412 .. 0.81

  Alignments for each domain:
  == domain 1  score: -3.7 bits;  conditional E-value: 3.6
        Cnd1 120 lefLlsyipkdkqeaeslveklcprlqhansav 152
                 +e+L++ +p   +  e+++ ++++ l+h+   v
  KOO24381.1 215 MEMLIDWQPTYGN-VETMLVQVTAFLSHSSARV 246
                 6778888888777.8888888888888876654 PP

  == domain 2  score: 14.9 bits;  conditional E-value: 7e-06
        Cnd1  21 ylvepLrkrLkDedpyVRktaaivvakL..ilndmvkekgflselaklleDenpr 73 
                 +   pL krL D +p+VRk a   +a+L  +  +     +  +++ ++l+D+ p 
  KOO24381.1 337 AAAGPLAKRLADGNPQVRKAAYSELAELfaLADEPSVFDEYAARIVEILCDKMPA 391
                 56789***********************955555555555889999999998775 PP

>> HEAT  HEAT repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.8   0.0   0.00071       2.1       5      26 ..     342     363 ..     340     366 .. 0.84
   2 ?   -4.0   0.0         6   1.8e+04       6      21 ..     382     397 ..     381     403 .. 0.66
   3 ?    1.9   0.5      0.12   3.7e+02      15      26 ..     463     474 ..     452     478 .. 0.83
   4 ?   -1.1   0.0       1.1   3.1e+03      17      28 ..     528     539 ..     525     541 .. 0.79

  Alignments for each domain:
  == domain 1  score: 8.8 bits;  conditional E-value: 0.00071
                 HHHHHT-SSHHHHHHHHHHHHH CS
        HEAT   5 llkllsDpspeVReaAakaLga 26 
                 l k l D +p+VR+aA   L++
  KOO24381.1 342 LAKRLADGNPQVRKAAYSELAE 363
                 7899************876665 PP

  == domain 2  score: -4.0 bits;  conditional E-value: 6
                 HHHHT-SSHHHHHHHH CS
        HEAT   6 lkllsDpspeVReaAa 21 
                 ++ l+D+ p    +A+
  KOO24381.1 382 VEILCDKMPATQGSAL 397
                 5668888776655555 PP

  == domain 3  score: 1.9 bits;  conditional E-value: 0.12
                 HHHHHHHHHHHH CS
        HEAT  15 eVReaAakaLga 26 
                 + R+aA+kaL++
  KOO24381.1 463 KTRAAALKALAQ 474
                 67********97 PP

  == domain 4  score: -1.1 bits;  conditional E-value: 1.1
                 HHHHHHHHHHHH CS
        HEAT  17 ReaAakaLgala 28 
                 R+aAa+ L  l+
  KOO24381.1 528 RKAAAEQLISLL 539
                 9****9998876 PP

>> RWD  RWD domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.0   3.2e-05     0.096      34      78 ..     162     202 ..     123     235 .. 0.81

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 3.2e-05
                 EEEEECECCCC....TT-CEEEEEEEEE-SSTTSS--EEEEEECC CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
         RWD  34 ikldededeedsefeekkkpslkleiklpeeYPeeaPiislsste 78 
                 ++ d+++ +e    +++++++l+l+i++p + P ++P +   s+ 
  KOO24381.1 162 LHKDLQSLSE----SKDDLVPLVLQIRFPDDFPFTPPLVFCASPT 202
                 4444444544....4699*******************99877766 PP

>> HEAT_2  HEAT repeats
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.1       1.2   3.6e+03      55      55 ..      99      99 ..      79     130 .. 0.46
   2 ?   -2.6   0.7       2.6   7.8e+03      50      64 ..     261     275 ..     253     299 .. 0.60
   3 ?   13.5   0.4   2.4e-05     0.073       3      62 ..     341     409 ..     339     417 .. 0.83
   4 ?    2.6   1.0     0.058   1.7e+02      27      71 ..     428     476 ..     419     478 .. 0.71
   5 ?    2.5   0.2     0.063   1.9e+02      48      76 ..     516     543 ..     508     554 .. 0.80

  Alignments for each domain:
  == domain 1  score: -1.6 bits;  conditional E-value: 1.2
      HEAT_2 55 L 55
                L
  KOO24381.1 99 L 99
                2 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 2.6
      HEAT_2  50 aaaeaLgaigdpeal 64 
                 aaa a+ga +d++++
  KOO24381.1 261 AAAAAAGAGDDEASA 275
                 333333333333333 PP

  == domain 3  score: 13.5 bits;  conditional E-value: 2.4e-05
      HEAT_2   3 aLlqalendpdpevrraairaLg...rignp.....ealpaLvellededpavRraaaeaLgai..gdpe 62 
                 +L ++l  d +p+vr+aa  +L+    ++++     e+ + +ve+l d+ pa++  a +a+ a+  g p+
  KOO24381.1 341 PLAKRL-ADGNPQVRKAAYSELAelfALADEpsvfdEYAARIVEILCDKMPATQGSALDAATAFlrGAPA 409
                 688999.9***************877334444777788**********************9987555554 PP

  == domain 4  score: 2.6 bits;  conditional E-value: 0.058
      HEAT_2  27 ignpealpaLvell.ededpavRraaae.aLgai.g.dpealpaLkell 71 
                 ++ p+al+aL+ l+     ++v+ a a  a+++i + + +al+aL++++
  KOO24381.1 428 LARPKALEALLYLVeVGGASHVQIALALgAASKIvKtRAAALKALAQAV 476
                 5778999999999955788899998887344455442477788887765 PP

  == domain 5  score: 2.5 bits;  conditional E-value: 0.063
      HEAT_2  48 RraaaeaLgaigdpealpaLkellddddd 76 
                    aa+a g+ g+++a++ L  lld  ++
  KOO24381.1 516 VIGAAKAQGWQGRKAAAEQLISLLDG-RE 543
                 56799999999999999999998854.44 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (573 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       818  (0.0456244); expected 358.6 (0.02)
Passed bias filter:                      427  (0.0238162); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.60u 0.26s 00:00:00.86 Elapsed: 00:00:00.44
# Mc/sec: 3900.49
//
Query:       KOO24382.1  [L=272]
Description: tesmin tso1-like cxc domain-containing protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    5.5e-24   84.2  55.9      7e-13   48.7  23.8    2.2  2  TCR          Tesmin/TSO1-like CXC domain, cysteine-rich domai
  ------ inclusion threshold ------
        0.5   10.5  47.5        1.1    9.4  22.3    2.8  2  MSL2-CXC     CXC domain of E3 ubiquitin-protein ligase MSL2


Domain annotation for each model (and alignments):
>> TCR  Tesmin/TSO1-like CXC domain, cysteine-rich domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.6  24.0   1.2e-14   1.1e-10       2      37 ..      35      69 ..      34      70 .. 0.96
   2 !   48.7  23.8   7.8e-17     7e-13       2      37 ..     107     142 ..     106     143 .. 0.96

  Alignments for each domain:
  == domain 1  score: 41.6 bits;  conditional E-value: 1.2e-14
         TCR  2 kgCnCkkskClklYCeCfaagklCsskCkCeeCkNk 37
                k+CnC++s+ClklYCeCfa+g++C   C+C++C N+
  KOO24382.1 35 KTCNCRNSRCLKLYCECFASGQYCYG-CNCQSCFNN 69
                89************************.********8 PP

  == domain 2  score: 48.7 bits;  conditional E-value: 7.8e-17
         TCR   2 kgCnCkkskClklYCeCfaagklCsskCkCeeCkNk 37 
                 +gCnCkks+Clk+YCeCf+ag++C ++CkC++C N+
  KOO24382.1 107 RGCNCKKSGCLKKYCECFQAGIKCADTCKCVNCLNR 142
                 79********************************97 PP

>> MSL2-CXC  CXC domain of E3 ubiquitin-protein ligase MSL2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4  22.3   0.00013       1.1      15      52 ..      32      74 ..      27      77 .. 0.74
   2 ?    6.0  17.2    0.0014        13      17      47 ..     111     142 ..      99     148 .. 0.85

  Alignments for each domain:
  == domain 1  score: 9.4 bits;  conditional E-value: 0.00013
    MSL2-CXC 15 ekkkkltCrnqRC.....pCYvngksCtdCkCrgCkNphkkdl 52
                ek+k   Crn+RC      C+ +g+ C +C+C++C N  ++d 
  KOO24382.1 32 EKRKTCNCRNSRClklycECFASGQYCYGCNCQSCFNNPENDE 74
                4566677899996333338****************87666665 PP

  == domain 2  score: 6.0 bits;  conditional E-value: 0.0014
    MSL2-CXC  17 kkkltCrnqRCpCYvngksCtd.CkCrgCkNp 47 
                  kk  C ++ C C+++g  C+d CkC+ C N 
  KOO24382.1 111 CKKSGCLKKYCECFQAGIKCADtCKCVNCLNR 142
                 46889***************977******996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (272 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       790  (0.0440627); expected 358.6 (0.02)
Passed bias filter:                      219  (0.0122148); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.41u 0.24s 00:00:00.64 Elapsed: 00:00:00.39
# Mc/sec: 2098.64
//
Query:       KOO24383.1  [L=264]
Description: hypothetical protein Ctob_003758 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      2e-12   47.1   0.1      2e-12   47.1   0.1    1.7  2  Myb_DNA-binding  Myb-like DNA-binding domain
    2.1e-06   27.9   0.3    2.1e-06   27.9   0.3    1.6  2  Myb_DNA-bind_6   Myb-like DNA-binding domain
  ------ inclusion threshold ------
      0.025   14.4   0.0      0.039   13.8   0.0    1.2  1  Myb_DNA-bind_7   Myb DNA-binding like


Domain annotation for each model (and alignments):
>> Myb_DNA-binding  Myb-like DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.2       1.8   1.1e+04      23      42 ..       8      26 ..       6      26 .. 0.67
   2 !   47.1   0.1   3.3e-16     2e-12       1      45 [.     154     198 ..     154     199 .. 0.96

  Alignments for each domain:
  == domain 1  score: -3.2 bits;  conditional E-value: 1.8
                     HHHHHHHHTSS-HHHHHHHH CS
  Myb_DNA-binding 23 WkkIaerlggRtekqcrsrw 42
                     +++I++ + +R+    +srw
       KOO24383.1  8 PTSISRSI-SRSISRSISRW 26
                     67777777.67777667777 PP

  == domain 2  score: 47.1 bits;  conditional E-value: 3.3e-16
                      CSSSBHHHHHHHHHHHHHHTTCHHHHHHHHTSS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgkWteeEdelLleavkkhGnrWkkIaerlggRtekqcrsrwrny 45 
                      r +W++ Ed+ +l +v+++G +W+k a+rl+gRte ++r+r++++
       KOO24383.1 154 RVSWSKAEDDAILSLVAELGHKWSKLADRLPGRTEHAIRNRFHRL 198
                      689***************************************986 PP

>> Myb_DNA-bind_6  Myb-like DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.1       1.1   6.6e+03      22      33 ..      10      20 ..       6      30 .. 0.50
   2 !   27.9   0.3   3.4e-10   2.1e-06       1      44 [.     157     199 ..     157     210 .. 0.89

  Alignments for each domain:
  == domain 1  score: -2.5 bits;  conditional E-value: 1.1
  Myb_DNA-bind_6 22 nIaealnrRtpk 33
                    +I++ ++ R+ +
      KOO24383.1 10 SISRSIS-RSIS 20
                    5555555.4332 PP

  == domain 2  score: 27.9 bits;  conditional E-value: 3.4e-10
  Myb_DNA-bind_6   1 WteeEdeiLlklvekygndWknIaealnrRtpkqcfdrwknkLr 44 
                     W+++Ed+++l+lv + g +W++ a+ l+ Rt  ++++r+++ L 
      KOO24383.1 157 WSKAEDDAILSLVAELGHKWSKLADRLPGRTEHAIRNRFHR-LQ 199
                     ***************************55***********9.73 PP

>> Myb_DNA-bind_7  Myb DNA-binding like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.0   6.5e-06     0.039       6      58 ..     152     209 ..     148     221 .. 0.83

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 6.5e-06
  Myb_DNA-bind_7   6 kktkkWskeetekFYkaLsqfGtDFsliaklfpkrtrrqlKlKFkk.....Eerknpe 58 
                     +++ +Wsk+e +   + + ++G  +s +a  +p+rt + ++++F++     E+r++++
      KOO24383.1 152 EPRVSWSKAEDDAILSLVAELGHKWSKLADRLPGRTEHAIRNRFHRlqniyEDRQRRQ 209
                     56789***************************************97444445555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (264 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       496  (0.0276647); expected 358.6 (0.02)
Passed bias filter:                      352  (0.019633); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.45u 0.23s 00:00:00.68 Elapsed: 00:00:00.41
# Mc/sec: 1949.29
//
Query:       KOO24384.1  [L=783]
Description: lysocardiolipin acyltransferase 1 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    5.7e-22   77.8   0.0    1.5e-21   76.4   0.0    1.7  2  Acyltransferase  Acyltransferase
     0.0013   18.8   0.0     0.0028   17.7   0.0    1.5  1  Acyltransf_C     Acyltransferase C-terminus


Domain annotation for each model (and alignments):
>> Acyltransferase  Acyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   76.4   0.0   1.7e-25   1.5e-21       3     134 ..      48     206 ..      44     207 .. 0.82
   2 ?   -3.2   0.0      0.68   6.1e+03      41      67 ..     309     335 ..     302     336 .. 0.82

  Alignments for each domain:
  == domain 1  score: 76.4 bits;  conditional E-value: 1.7e-25
  Acyltransferase   3 rvtglenlpe...kgpailvaNHqsylDvlllwlllyksngprnvviiakkellsipllgflmrllgfifidRksnaraagslenise...lle 90 
                      +v+g  +l++   ++  i+++NH  ++D+l+lw+l  ++++ r + i++k  l+++pl+g+++++++fif++R++++ + +++e++ +   +l 
       KOO24384.1  48 TVSG--TLQPpssERATIIICNHHCRVDWLFLWCLCARMRWLRALTIMLKGPLKKVPLFGWACQAFHFIFLSRNDRQGDLSTIEHVCQhlvALG 139
                      4444..23323447889*******************999955*******************************777777777777777766555 PP

  Acyltransferase  91 egkl.vviFPEGtrsre..................gel.lpfkkGlvrlaakak...kgvpivPvai 134
                       ++  v+ FPEGt+++                   + l  p  +G+++ ++ +    + v++v++++
       KOO24384.1 140 GDPPvVLCFPEGTDLSPenvarsktfaaskglpvmEHLlNPRTAGFASTVRALGaqlDAVYDVTITY 206
                      55666************99999999999999999644456777788888777779999999999987 PP

  == domain 2  score: -3.2 bits;  conditional E-value: 0.68
  Acyltransferase  41 prnvviiakkellsipllgflmrllgf 67 
                      ++ v ++++ +l++ pllgf++ ++g+
       KOO24384.1 309 WAVVALLLAYALATAPLLGFGLIAVGC 335
                      477888999999999****99988887 PP

>> Acyltransf_C  Acyltransferase C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.7   0.0   3.1e-07    0.0028       3      45 ..     229     275 ..     228     276 .. 0.87

  Alignments for each domain:
  == domain 1  score: 17.7 bits;  conditional E-value: 3.1e-07
  Acyltransf_C   3 LsG.kpsevhiyvrripleevPed.e..eelaeWlhelfeeKDklle 45 
                   ++G  p+ v ++v+r p+ e+  d +  e+l +Wl+  + +K+++l 
    KOO24384.1 229 MNGyWPRAVTFHVERTPVAELLRDgDtdEALGAWLRRAWAAKEARLA 275
                   57888999***********9987765569**************9985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (783 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       464  (0.0258799); expected 358.6 (0.02)
Passed bias filter:                      321  (0.017904); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.61u 0.27s 00:00:00.88 Elapsed: 00:00:00.43
# Mc/sec: 5480.97
//
Query:       KOO24385.1  [L=198]
Description: hypothetical protein Ctob_003756 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (198 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       261  (0.0145574); expected 358.6 (0.02)
Passed bias filter:                      242  (0.0134977); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.41u 0.24s 00:00:00.64 Elapsed: 00:00:00.41
# Mc/sec: 1466.21
//
Query:       KOO24386.1  [L=1176]
Description: paired amphipathic helix protein sin3a [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    9.6e-38  128.1  17.8    8.4e-20   70.7   4.4    3.7  3  PAH             Paired amphipathic helix repeat
    4.9e-36  124.9   9.0    3.9e-34  118.7   0.5    3.5  4  Sin3a_C         C-terminal domain of Sin3a protein
    3.5e-29  100.8   0.0    7.5e-29   99.7   0.0    1.6  1  Sin3_corepress  Sin3 family co-repressor
  ------ inclusion threshold ------
      0.091   13.7   0.7       0.49   11.4   0.1    2.5  2  RAC_head        Ribosome-associated complex head domain


Domain annotation for each model (and alignments):
>> PAH  Paired amphipathic helix repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.9   0.1   6.8e-18     3e-14       2      45 .]      70     113 ..      69     113 .. 0.98
   2 !   70.7   4.4   1.9e-23   8.4e-20       1      45 []     229     273 ..     229     273 .. 0.99
   3 !   12.1   1.6   3.7e-05      0.16       3      41 ..     390     429 ..     389     433 .. 0.83

  Alignments for each domain:
  == domain 1  score: 52.9 bits;  conditional E-value: 6.8e-18
         PAH   2 vYkeFLdiLhdyqkeqidskeVyeqVskLFhdhpdLlreFnqFL 45 
                 +Y++FLdi+++++ ++id+++V+ +V +LF +h +L+ +Fn+FL
  KOO24386.1  70 IYNKFLDIMKEFKAQSIDTPGVIDRVLNLFFGHRELILGFNTFL 113
                 9******************************************8 PP

  == domain 2  score: 70.7 bits;  conditional E-value: 1.9e-23
         PAH   1 evYkeFLdiLhdyqkeqidskeVyeqVskLFhdhpdLlreFnqFL 45 
                 e+Yk+FL+iLh+yqkeq+++keVyeqVs LF++h dLl eF qFL
  KOO24386.1 229 ETYKAFLEILHTYQKEQKTIKEVYEQVSHLFKSHTDLLSEFSQFL 273
                 89******************************************8 PP

  == domain 3  score: 12.1 bits;  conditional E-value: 3.7e-05
         PAH   3 YkeFLdiLhdyqkeqidskeVyeqVskLFh.dhpdLlreF 41 
                 Y e L++L+ y+++  d+ e+ + V +LF+ ++ +L+  F
  KOO24386.1 390 YLELLKCLNLYSQQVLDRSELLTLVHDLFKrSQFELFGTF 429
                 7789**********99*************83555666555 PP

>> Sin3a_C  C-terminal domain of Sin3a protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   0.0      0.19   8.6e+02      57      89 ..      60      89 ..      38     100 .. 0.70
   2 ?   -3.5   0.5       1.5   6.6e+03     153     196 ..     521     565 ..     510     572 .. 0.77
   3 !  118.7   0.5   8.8e-38   3.9e-34       1     170 [.     831    1018 ..     831    1023 .. 0.86
   4 !    9.8   0.0   0.00013       0.6     246     285 ..    1055    1094 ..    1032    1095 .. 0.68

  Alignments for each domain:
  == domain 1  score: -0.6 bits;  conditional E-value: 0.19
     Sin3a_C 57 lalrleseeeeeeyYsqllelveklldGeidqs 89
                +++   + e++ ++Y+++l+ ++++   +id  
  KOO24386.1 60 VKM---KFEKQPQIYNKFLDIMKEFKAQSIDTP 89
                333...4478899***********999999875 PP

  == domain 2  score: -3.5 bits;  conditional E-value: 1.5
     Sin3a_C 153 yrkkaekll..kdenlfriewkseskkltiqlldkddetldddeve 196
                  +++ e+++  ++++ f ++   e+++ t  +l + + +++    e
  KOO24386.1 521 RKNQYEECIfrAEDERFELDTTIETNQCTLTYLTTISLEIERFS-E 565
                 56678888888999999999999999999999999988887766.3 PP

  == domain 3  score: 118.7 bits;  conditional E-value: 8.8e-38
     Sin3a_C    1 FfaNttfYvflrlfqiLyeRLlkikqaeeqvaeevkerkan.kvavelgld...kkesealalrle.....................seeeeeeyYs 72  
                  F +N++fY+f+rl++i+  RL  +k++++++a+e ++r+    +a   + d       ++     +                     ++e + ++Y 
  KOO24386.1  831 FIGNSHFYIFVRLYHIILMRLDAAKDMAAKAAKEYASRQITdAEAAASKADaaaA---SSS----AangvdeasaealnraselqriRDECKGDMYL 920 
                  669***************************9777777665404444444442221...111....1233445678888999999999999******* PP

     Sin3a_C   73 qllelveklldGeidqsqfEdslRemfgikaYklfTldKliqalvkqlqtivsDekcqellelfekerskeettsqdeisyrkkaekllkdenlfri 169 
                  ++++++++l+dG+++ s++Ed lR ++g++aY lfTl K+i++ +kqlq ++ +e +q llel+++er +    s  e +yr +a+ +l+ +++f +
  KOO24386.1  921 AFISCLRQLIDGKMEASAYEDVLRTLLGTNAYSLFTLHKVISQALKQLQMLLVEEASQTLLELYTYERCRALPGSLSEGTYRSNARMVLEGDDCFCM 1017
                  ********************************************************************9999999999*****************88 PP

     Sin3a_C  170 e 170 
                  +
  KOO24386.1 1018 D 1018
                  6 PP

  == domain 4  score: 9.8 bits;  conditional E-value: 0.00013
     Sin3a_C  246 qekaekeeeaekeleveekleiriclnsyklvyvpgtedv 285 
                  +++a++++++ + +  +++le ri +++ kl +v +tedv
  KOO24386.1 1055 RRTASTKQRRWDATVLRNGLESRIATSTCKLRFVYKTEDV 1094
                  23333444455556668**********************8 PP

>> Sin3_corepress  Sin3 family co-repressor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   99.7   0.0   1.7e-32   7.5e-29       2      98 .]     473     567 ..     472     567 .. 0.96

  Alignments for each domain:
  == domain 1  score: 99.7 bits;  conditional E-value: 1.7e-32
  Sin3_corepress   2 rlgpsYrlLpksyqqpkcsgrdelekevLNdewvsvptwasedsgsfkasrknqyeealfrcEderyelDmvieanrstiklleelakkiesmse 96 
                     r g sYr+Lp++++ p++sgr  le  vLNd+wvsv+t+ +ed  +fk+ rknqyee +fr Eder+elD  ie+n+ t+  l ++  +ie+ se
      KOO24386.1 473 RHGTSYRQLPDTHPVPPSSGRGPLETLVLNDTWVSVATG-TEDL-NFKTLRKNQYEECIFRAEDERFELDTTIETNQCTLTYLTTISLEIERFSE 565
                     6799***********************************.9999.6*********************************************9998 PP

  Sin3_corepress  97 ee 98 
                     +e
      KOO24386.1 566 QE 567
                     76 PP

>> RAC_head  Ribosome-associated complex head domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.0       1.6   7.3e+03      12      31 ..     242     261 ..     239     273 .. 0.71
   2 ?   11.4   0.1   0.00011      0.49      24      83 ..     648     706 ..     632     714 .. 0.79

  Alignments for each domain:
  == domain 1  score: -2.0 bits;  conditional E-value: 1.6
                 HHHHHHHHHHHHHTGGGSSS CS
    RAC_head  12 KKekralrgavkdanYFadg 31 
                  Ke+++++++ +++ +  ++
  KOO24386.1 242 QKEQKTIKEVYEQVSHLFKS 261
                 68888888888887776444 PP

  == domain 2  score: 11.4 bits;  conditional E-value: 0.00011
                 HTGGGSSSS--.HHHHHHHHHHHHHHHHH--HHHHHHHHHHHTT---HHHHHHHHHHHHH CS
    RAC_head  24 danYFadgeaekakvidkvLedvdllieklddeeLaelaekleaakdaeevkavfkeevk 83 
                 +  YF++g++++ +  + +  ++ +l+e+ d e+ a+l+++l ++++++++ a+ ++++ 
  KOO24386.1 648 RSFYFKQGDKKNFSGKQ-MVMELKALCENADGENAAALRATLGDEETSAAAAAAANKAAG 706
                 5569*******999944.5568**********************9777777766666554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1176 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       954  (0.0532099); expected 358.6 (0.02)
Passed bias filter:                      585  (0.0326287); expected 358.6 (0.02)
Passed Vit filter:                        50  (0.00278878); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.82u 0.32s 00:00:01.13 Elapsed: 00:00:00.47
# Mc/sec: 7496.82
//
Query:       KOO24387.1  [L=650]
Description: hypothetical protein Ctob_008222 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (650 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       280  (0.0156172); expected 358.6 (0.02)
Passed bias filter:                      267  (0.0148921); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.52u 0.27s 00:00:00.79 Elapsed: 00:00:00.41
# Mc/sec: 4704.28
//
Query:       KOO24388.1  [L=387]
Description: hypothetical protein Ctob_008223 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    0.00066   20.0   0.0        1.6    8.9   0.0    2.2  2  PhyH      Phytanoyl-CoA dioxygenase (PhyH)
  ------ inclusion threshold ------
       0.08   12.7   0.0       0.18   11.5   0.0    1.6  1  Cupin_2   Cupin domain


Domain annotation for each model (and alignments):
>> PhyH  Phytanoyl-CoA dioxygenase (PhyH)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.9   0.0   0.00018       1.6      69     133 ..      46     111 ..       7     117 .. 0.72
   2 !    8.9   0.0   0.00018       1.6     184     201 ..     240     257 ..     201     262 .. 0.89

  Alignments for each domain:
  == domain 1  score: 8.9 bits;  conditional E-value: 0.00018
                 HHHHHHHHHHHTSCEEEE........EEEEEEEEEEEE-TTTCB-EEEEE-SGGGSTEESGCCEEEEEEESS- CS
        PhyH  69 rkvadlvrailgqdvyva........avlqsmyqdifkqpkiGgevqpwHqDstflptdpeesvvgvwialed 133
                 r ++d +  +++++v+++        +v+ +++   +k    G  + ++HqD++ + td  +s+ ++wi l+ 
  KOO24388.1  46 RACKDEAIKLVCNRVCAEaerlygcrMVVATDW--AVKSL--GFHT-TYHQDEYAYCTD--RSSYTAWILLDR 111
                 455555555555555555555555544566777..66666..6777.*********988..8********996 PP

  == domain 2  score: 8.9 bits;  conditional E-value: 0.00018
                 BTTTEEEEEETTSEEEE- CS
        PhyH 184 vkaGdavlfhgrllHgsg 201
                 ++aGd+v+f++ l+H s+
  KOO24388.1 240 LEAGDFVIFNSGLFHSSS 257
                 79*************997 PP

>> Cupin_2  Cupin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0     2e-05      0.18      38      61 ..     237     260 ..     229     267 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 2e-05
                 EEEEETTEEEEE-TT-EEEEEE-S CS
     Cupin_2  38 eveleaGdsvyfpagtpHrfrNtg 61 
                   +leaGd+v+f++g  H   N+ 
  KOO24388.1 237 LEHLEAGDFVIFNSGLFHSSSNPA 260
                 5689**************999975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (387 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       422  (0.0235373); expected 358.6 (0.02)
Passed bias filter:                      351  (0.0195772); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.49u 0.22s 00:00:00.71 Elapsed: 00:00:00.41
# Mc/sec: 2866.31
//
Query:       KOO24389.1  [L=907]
Description: hypothetical protein Ctob_008224 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    7.1e-06   25.5   0.1    0.00021   21.0   0.1    2.4  2  EF-hand_6  EF-hand domain
    0.00026   20.3   0.1    0.00082   18.8   0.0    1.9  2  EF-hand_1  EF hand
    0.00064   19.1   0.3     0.0023   17.3   0.2    1.9  2  EF-hand_5  EF hand
     0.0013   19.1   0.0     0.0034   17.8   0.0    1.7  1  EF-hand_7  EF-hand domain pair
     0.0063   16.3   0.0      0.064   13.1   0.0    2.5  3  EF-hand_8  EF-hand domain pair
  ------ inclusion threshold ------
      0.015   15.3   0.2        0.1   12.7   0.1    2.5  2  LRR_6      Leucine Rich repeat


Domain annotation for each model (and alignments):
>> EF-hand_6  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.0   0.1   7.1e-08   0.00021       2      28 ..     244     270 ..     243     276 .. 0.92
   2 ?    1.8   0.0       0.1     3e+02      16      28 ..     428     440 ..     426     446 .. 0.87

  Alignments for each domain:
  == domain 1  score: 21.0 bits;  conditional E-value: 7.1e-08
   EF-hand_6   2 lreaFklfDkdgdGkidaeElrkalrk 28 
                 l+e+F  fD++gdG +da+El+ alr 
  KOO24389.1 244 LKELFIRFDTSGDGALDADELKVALRS 270
                 789**********************95 PP

  == domain 2  score: 1.8 bits;  conditional E-value: 0.1
   EF-hand_6  16 kidaeElrkalrk 28 
                 +ida+Elrk+++ 
  KOO24389.1 428 TIDAAELRKIYKE 440
                 79********994 PP

>> EF-hand_1  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.8   0.0   2.7e-07   0.00082       2      28 ..     244     270 ..     243     271 .. 0.94
   2 ?   -2.2   0.0       1.4   4.1e+03      16      27 ..     428     439 ..     428     440 .. 0.84

  Alignments for each domain:
  == domain 1  score: 18.8 bits;  conditional E-value: 2.7e-07
                 HHHHHHHHTTTSSSEEEHHHHHHHHHH CS
   EF-hand_1   2 lkeiFrefDkDgdGkIdfeEfkellkk 28 
                 lke+F  fD+ gdG +d +E+k +l++
  KOO24389.1 244 LKELFIRFDTSGDGALDADELKVALRS 270
                 89**********************986 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 1.4
                 EEEHHHHHHHHH CS
   EF-hand_1  16 kIdfeEfkellk 27 
                 +Id  E++++ k
  KOO24389.1 428 TIDAAELRKIYK 439
                 699****99876 PP

>> EF-hand_5  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   0.2   7.8e-07    0.0023       1      22 [.     244     265 ..     244     268 .. 0.93
   2 ?   -1.5   0.0      0.71   2.1e+03      15      24 ..     428     437 ..     428     438 .. 0.85

  Alignments for each domain:
  == domain 1  score: 17.3 bits;  conditional E-value: 7.8e-07
                 HHHHHHHH-SS-SSCE-HHHHH CS
   EF-hand_5   1 lkdtFqaiDlNgDGkIskeELk 22 
                 lk++F ++D+ gDG ++++ELk
  KOO24389.1 244 LKELFIRFDTSGDGALDADELK 265
                 6889*****************8 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 0.71
                 CE-HHHHHHH CS
   EF-hand_5  15 kIskeELktl 24 
                 +I++ EL+++
  KOO24389.1 428 TIDAAELRKI 437
                 59*****985 PP

>> EF-hand_7  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.8   0.0   1.2e-06    0.0034       1      38 [.     241     275 ..     241     291 .. 0.84

  Alignments for each domain:
  == domain 1  score: 17.8 bits;  conditional E-value: 1.2e-06
   EF-hand_7   1 eeklkeaFkelDtdgdgyldkeellrllrkifqgageg 38 
                 +e+lke F  +Dt gdg ld +el+ +lr+     g +
  KOO24389.1 241 DEVLKELFIRFDTSGDGALDADELKVALRSAL---GVD 275
                 589**********************9999733...444 PP

>> EF-hand_8  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.1   0.0   2.1e-05     0.064       9      52 ..     219     268 ..     217     271 .. 0.77
   2 ?   -0.4   0.0      0.35   1.1e+03       2      14 ..     426     438 ..     425     445 .. 0.83
   3 ?   -3.1   0.0       2.6   7.6e+03      25      37 ..     595     607 ..     595     607 .. 0.85

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 2.1e-05
   EF-hand_8   9 elrrilrilglkk.....glseee.vdilfrefDtdgdGkisfeEFcvll 52 
                 +lr+ +r+l++++     +  ++e + +lf +fDt gdG+++ +E  v l
  KOO24389.1 219 DLRSRVRVLVTQRnllalKGHPDEvLKELFIRFDTSGDGALDADELKVAL 268
                 56665666666667777745555559*******************99987 PP

  == domain 2  score: -0.4 bits;  conditional E-value: 0.35
   EF-hand_8   2 kgkItreelrril 14 
                 +  I+ +elr+i+
  KOO24389.1 426 GATIDAAELRKIY 438
                 678********99 PP

  == domain 3  score: -3.1 bits;  conditional E-value: 2.6
   EF-hand_8  25 eeevdilfrefDt 37 
                 e+e+ ++++++ t
  KOO24389.1 595 EYELSHMIKAANT 607
                 799*****99865 PP

>> LRR_6  Leucine Rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.1   3.5e-05       0.1       3      24 .]     703     724 ..     701     724 .. 0.89
   2 ?   -1.1   0.0      0.91   2.7e+03       4      22 ..     735     753 ..     733     755 .. 0.73

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 3.5e-05
       LRR_6   3 thLteLdLsgNdIgDeGaeaLa 24 
                   L+ L+L +N+IgD G+  La
  KOO24389.1 703 LQLERLELVWNEIGDGGIVVLA 724
                 5699*************99887 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 0.91
       LRR_6   4 hLteLdLsgNdIgDeGaea 22 
                  L++L Ls+N  gD  ++a
  KOO24389.1 735 RLRTLCLSYNSYGDLALTA 753
                 699******9766655555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (907 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       397  (0.0221429); expected 358.6 (0.02)
Passed bias filter:                      292  (0.0162865); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.68u 0.26s 00:00:00.94 Elapsed: 00:00:00.45
# Mc/sec: 6044.00
//
Query:       KOO24390.1  [L=311]
Description: hypothetical protein Ctob_008228 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (311 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      3040  (0.169558); expected 358.6 (0.02)
Passed bias filter:                      529  (0.0295053); expected 358.6 (0.02)
Passed Vit filter:                       147  (0.00819901); expected 17.9 (0.001)
Passed Fwd filter:                        52  (0.00290033); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 1.23u 0.37s 00:00:01.60 Elapsed: 00:00:00.53
# Mc/sec: 1756.00
//
Query:       KOO24391.1  [L=110]
Description: hypothetical protein Ctob_008221 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.032   13.8   0.0      0.057   13.0   0.0    1.4  1  EF-hand_1  EF hand
      0.033   14.1   0.0      0.056   13.4   0.0    1.4  1  EF-hand_6  EF-hand domain
      0.074   12.6   0.1       0.18   11.4   0.1    1.6  1  EF-hand_5  EF hand


Domain annotation for each model (and alignments):
>> EF-hand_1  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.0   9.5e-06     0.057       8      27 ..      24      43 ..      21      45 .. 0.82

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 9.5e-06
                HHTTTSSSEEEHHHHHHHHH CS
   EF-hand_1  8 efDkDgdGkIdfeEfkellk 27
                +fD+DgdG+I  eE + +lk
  KOO24391.1 24 LFDRDGDGRIRAEEALFVLK 43
                7*********9999766665 PP

>> EF-hand_6  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.0   9.4e-06     0.056       8      27 ..      24      43 ..      21      55 .. 0.89

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 9.4e-06
   EF-hand_6  8 lfDkdgdGkidaeElrkalr 27
                lfD+dgdG i aeE   +l+
  KOO24391.1 24 LFDRDGDGRIRAEEALFVLK 43
                8************9888777 PP

>> EF-hand_5  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.1     3e-05      0.18       8      20 ..      25      37 ..      24      39 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 3e-05
                H-SS-SSCE-HHH CS
   EF-hand_5  8 iDlNgDGkIskeE 20
                +D +gDG+I +eE
  KOO24391.1 25 FDRDGDGRIRAEE 37
                9********6666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (110 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       278  (0.0155056); expected 358.6 (0.02)
Passed bias filter:                      206  (0.0114898); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.38u 0.23s 00:00:00.61 Elapsed: 00:00:00.40
# Mc/sec: 822.48
//
Query:       KOO24392.1  [L=465]
Description: hypothetical protein Ctob_008226 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (465 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2660  (0.148363); expected 358.6 (0.02)
Passed bias filter:                      439  (0.0244855); expected 358.6 (0.02)
Passed Vit filter:                       109  (0.00607954); expected 17.9 (0.001)
Passed Fwd filter:                        31  (0.00172904); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 1.14u 0.33s 00:00:01.47 Elapsed: 00:00:00.49
# Mc/sec: 2836.25
//
Query:       KOO24393.1  [L=212]
Description: hypothetical protein Ctob_008227 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (212 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       508  (0.028334); expected 358.6 (0.02)
Passed bias filter:                      352  (0.019633); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.42u 0.25s 00:00:00.67 Elapsed: 00:00:00.42
# Mc/sec: 1522.00
//
Query:       KOO24394.1  [L=511]
Description: hypothetical protein Ctob_008225 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    4.9e-17   62.5   4.3    4.9e-17   62.5   4.3    2.3  2  SNARE_assoc    SNARE associated Golgi protein
  ------ inclusion threshold ------
      0.064   13.9   0.8       0.15   12.7   0.8    1.5  1  NPR1_interact  NPR1 interacting


Domain annotation for each model (and alignments):
>> SNARE_assoc  SNARE associated Golgi protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.4      0.21   1.9e+03      19      41 ..     112     134 ..     108     176 .. 0.71
   2 !   62.5   4.3   5.5e-21   4.9e-17       6     119 ..     190     306 ..     181     307 .. 0.89

  Alignments for each domain:
  == domain 1  score: -0.7 bits;  conditional E-value: 0.21
  SNARE_assoc  19 gtlvtslgallGaslayllgryl 41 
                  +++++++++llGa+l  + gr +
   KOO24394.1 112 AFVASAAAVLLGATLLRFGGRAA 134
                  66777777777777665555544 PP

  == domain 2  score: 62.5 bits;  conditional E-value: 5.5e-21
  SNARE_assoc   6 llvaaGvlf.glllgtlvtslgallGaslayllgrylgrkalrrkllsekrvka.lerlverygflallllrllpivPrdlvn..yvaGltrvsfkrF 99 
                  l++  G+lf g+l g l++++ga+lG+++a  l+r l+ +  +  ++++++v + l++ ve  gf+++++lrl+p++P++  +  y+ G++++s+ +F
   KOO24394.1 190 LAFSSGILFgGVLEGALISAVGATLGSLIALSLSRGLL-QERVAGFIQKRPVARgLAKVVEADGFKTVFVLRLSPVLPIPTGSypYIYGTSKLSPLTF 286
                  55777888856677************************.6666668888888888**********************99887777************* PP

  SNARE_assoc 100 flatfiGsipwalvyaylGs 119
                  +++ f+Gs+++ l++aylG 
   KOO24394.1 287 AAGYFLGSLKPYLLDAYLGV 306
                  ******************95 PP

>> NPR1_interact  NPR1 interacting
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.8   1.6e-05      0.15      37     101 ..      30     106 ..      14     113 .. 0.78

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 1.6e-05
  NPR1_interact  37 kkekeekksasaiwtPsFeleDFieeeesaka.............psesvlntekkkdekeseeeeekakkekkekde 101
                    + ++++ +sa a++ Ps++++DF +e+ ++ a              s   + +  k+d +e++e++ ++++e+k ++ 
     KOO24394.1  30 QMRHAASRSACAARSPSIRMKDFWKEQMKETAaqevwqsreefarGSFR-ALISFKEDARETAEKRAARRQEGKSSEG 106
                    5567788899999**********999888888999**999999754433.5666777778888888888888886665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (511 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1320  (0.0736237); expected 358.6 (0.02)
Passed bias filter:                      688  (0.0383736); expected 358.6 (0.02)
Passed Vit filter:                        61  (0.00340231); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.56u 0.27s 00:00:00.83 Elapsed: 00:00:00.41
# Mc/sec: 3780.07
//
Query:       KOO24395.1  [L=556]
Description: poly(3-hydroxybutyrate) depolymerase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
     0.0011   18.5   0.0        0.2   11.1   0.0    2.6  2  Esterase_phd  Esterase PHB depolymerase


Domain annotation for each model (and alignments):
>> Esterase_phd  Esterase PHB depolymerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.6   0.0    0.0011        20       2      52 ..      50     101 ..      49     131 .. 0.69
   2 !   11.1   0.0   1.1e-05       0.2      81     130 ..     181     230 ..     152     279 .. 0.79

  Alignments for each domain:
  == domain 1  score: 4.6 bits;  conditional E-value: 0.0011
  Esterase_phd   2 ayrlylppGarr.gamplvvmlhGctqsveefaaGtrmnlladklGvvvlyp 52 
                   +yr+y+p   +    +pl++   G   s+    +G+ + +l+d +G++ +  
    KOO24395.1  50 TYRIYVPKAYKStTPLPLLIHHPGWGMSAASEESGAGITALSDTYGFISVTA 101
                   69****9965540345555555588899999999999*********987654 PP

  == domain 2  score: 11.1 bits;  conditional E-value: 1.1e-05
  Esterase_phd  81 vvalvdalvdehrvdaarvyvaGlsaGaaladllalhypdvfaavalhsG 130
                   + +l d+l ++  vd++r y +G s G+ ++  l+     ++aa++   G
    KOO24395.1 181 IPSLYDTLESQLCVDTSREYASGESNGGMMTYQLGVDLATRLAAISPEFG 230
                   78999***************************************974443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (556 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       357  (0.0199119); expected 358.6 (0.02)
Passed bias filter:                      202  (0.0112667); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.53u 0.25s 00:00:00.78 Elapsed: 00:00:00.42
# Mc/sec: 3935.49
//
Query:       KOO24396.1  [L=428]
Description: hypothetical protein Ctob_003808 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    6.7e-20   71.8   0.0    4.4e-14   52.9   0.0    2.3  2  Laminin_G_3  Concanavalin A-like lectin/glucanases superfamil
    6.6e-06   26.7   0.0    1.1e-05   26.0   0.0    1.3  1  Laminin_G_2  Laminin G domain
  ------ inclusion threshold ------
      0.036   14.3   0.0       0.06   13.6   0.0    1.3  1  Laminin_G_1  Laminin G domain


Domain annotation for each model (and alignments):
>> Laminin_G_3  Concanavalin A-like lectin/glucanases superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.9   0.0   7.4e-18   4.4e-14      15     108 ..      41     145 ..      25     166 .. 0.75
   2 !   16.7   0.0   1.1e-06    0.0063     128     150 ..     188     212 ..     172     214 .. 0.77

  Alignments for each domain:
  == domain 1  score: 52.9 bits;  conditional E-value: 7.4e-18
  Laminin_G_3  15 p.tssfTvsaWvkpdslpsa.aqiiis..sssdgrgfelgl.dgsgrlrfsvnagngaeesvtsgasvpageWtHvavtydggt.......lrlYvNG 100
                  p  +sfTv++W+k++ + +  +++i++  ++ +  +  lgl +++g   ++++++n++++s+++++++ +g+W+Hva+t+dg++       l lYv+G
   KOO24396.1  41 PlIDSFTVELWLKVERNAQLeSGRIVNliGFPGR-HPFLGLaADTGCAIVQLKTTNNTWYSYEGTTQLDDGQWHHVAATWDGTKqhpadraLALYVDG 137
                  35679**********9886515556657666444.888888456679999*******************************6655677777******* PP

  Laminin_G_3 101 vevgsatl 108
                   + +    
   KOO24396.1 138 ILEAAGGE 145
                  98877643 PP

  == domain 2  score: 16.7 bits;  conditional E-value: 1.1e-06
  Laminin_G_3 128 g..ddpfdGlidevriynralsaae 150
                  g  +++f+G++de+r++  a+++a+
   KOO24396.1 188 GytGRYFNGTLDELRVWRVARTEAQ 212
                  13589*****************998 PP

>> Laminin_G_2  Laminin G domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.0   0.0   1.9e-09   1.1e-05      17     123 ..      74     203 ..      60     205 .. 0.81

  Alignments for each domain:
  == domain 1  score: 26.0 bits;  conditional E-value: 1.9e-09
                  TTEEEEEEEETTEEEEEEESSS-EEEEE-SSSS-ESSSSEEEEEEECT.......TEEEEEECTS--CCCE-CSS....................... CS
  Laminin_G_2  17 ksdflalelkdgklvltynlgsgdtellssgkklndgewHsveverkg.......knltlsvDggetseanepgesqg..................ld 89 
                  ++ fl l  + g   +++++ +++  +   +++l+dg+wH+v  +++g       ++l l vDg  ++++ e  + ++                    
   KOO24396.1  74 RHPFLGLAADTGCAIVQLKTTNNTWYSYEGTTQLDDGQWHHVAATWDGtkqhpadRALALYVDGILEAAGGEDDDATEvpktpdatgltvvnkcetGL 171
                  56666666666666666665555555444499***************866677767777******999998888888899999999999999999888 PP

                  ..S.EEES--TTHHHHCCTTTS-B-CEEEEEEEE CS
  Laminin_G_2  90 leeslylGGlepeepetaspvtegFvGcirdlrl 123
                   ee++++GGl     +    + + F+G +++lr+
   KOO24396.1 172 CEEGMQIGGL--YCCSGGGYTGRYFNGTLDELRV 203
                  899999****..8899999999999999999986 PP

>> Laminin_G_1  Laminin G domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.0     1e-05      0.06      16      64 ..      72     121 ..      58     159 .. 0.84

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 1e-05
                  SSTTEEEEEEEETTEEEEEEESSS-.EEEEEEEEETTSSS-EEEEEEEET CS
  Laminin_G_1  16 kaekdflaleLvdGrlevsldlgsg.aavvvsgqklndGkwhkvevernk 64 
                    +++fl l+   G   v+l++ ++ + + +++++l+dG+wh+v ++  +
   KOO24396.1  72 PGRHPFLGLAADTGCAIVQLKTTNNtWYSYEGTTQLDDGQWHHVAATWDG 121
                  555679999999999999**999996777777777*********998655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (428 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       563  (0.0314016); expected 358.6 (0.02)
Passed bias filter:                      403  (0.0224776); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.48u 0.26s 00:00:00.74 Elapsed: 00:00:00.41
# Mc/sec: 3110.52
//
Query:       KOO24397.1  [L=650]
Description: hypothetical protein Ctob_003803 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (650 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       378  (0.0210832); expected 358.6 (0.02)
Passed bias filter:                      269  (0.0150036); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.54u 0.26s 00:00:00.80 Elapsed: 00:00:00.42
# Mc/sec: 4614.71
//
Query:       KOO24398.1  [L=429]
Description: hypothetical protein Ctob_003802 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.4e-07   29.5   0.8      2e-06   28.0   0.5    2.0  2  Ank_5     Ankyrin repeats (many copies)
    7.9e-06   26.4   0.1    1.6e-05   25.4   0.1    1.6  1  Ank_2     Ankyrin repeats (3 copies)
    1.9e-05   24.9   0.2    0.00021   21.6   0.2    2.4  2  Ank       Ankyrin repeat
    8.5e-05   23.0   0.0    0.00021   21.8   0.0    1.7  1  Ank_4     Ankyrin repeats (many copies)
    0.00015   21.9   0.0    0.00064   20.0   0.0    2.1  1  Ank_3     Ankyrin repeat
  ------ inclusion threshold ------
       0.44    9.9  15.2       0.76    9.1  15.2    1.3  1  Nop53     Nop53 (60S ribosomal biogenesis)


Domain annotation for each model (and alignments):
>> Ank_5  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.0   0.5   6.7e-10     2e-06      16      56 .]      71     111 ..      69     111 .. 0.97
   2 ?   -3.0   0.0       3.5     1e+04      39      50 ..     129     140 ..     117     142 .. 0.83

  Alignments for each domain:
  == domain 1  score: 28.0 bits;  conditional E-value: 6.7e-10
       Ank_5  16 gntpLhvAakygaadvvrlLlargadlnltdsrGltaldlA 56 
                 g+t+LhvAa++g a +v+lL+a gad nl+d + +ta+++A
  KOO24398.1  71 GETVLHVAARAGDAMLVELLVAAGADVNLKDLQERTAMHVA 111
                 78************************************998 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 3.5
       Ank_5  39 gadlnltdsrGl 50 
                 ++dl++td+ G 
  KOO24398.1 129 RVDLDVTDATGC 140
                 689999998886 PP

>> Ank_2  Ankyrin repeats (3 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.4   0.1   5.3e-09   1.6e-05      22      75 ..      64     122 ..      26     136 .. 0.64

  Alignments for each domain:
  == domain 1  score: 25.4 bits;  conditional E-value: 5.3e-09
       Ank_2  22 pnk...ngktaLhyAakngnleivklLleh...ad...ndgrtpLhyAarsghleivklLlek 75 
                 p+     g+t+Lh+Aa++g+  +v+lL+++   ++    + rt++h+A   g   +++ Lle+
  KOO24398.1  64 PHRgiaAGETVLHVAARAGDAMLVELLVAAgadVNlkdLQERTAMHVAG--G--AVARALLES 122
                 331345899*********976669999997756334447799****994..6..688888865 PP

>> Ank  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.6   0.2     7e-08   0.00021       2      31 ..      71     101 ..      70     102 .. 0.94
   2 ?    0.2   0.0      0.41   1.2e+03       3      28 ..     105     133 ..     104     137 .. 0.63

  Alignments for each domain:
  == domain 1  score: 21.6 bits;  conditional E-value: 7e-08
                 SBBHHHHHHHHTTHHHHHHHH.TTTSTTCBT CS
         Ank   2 GnTPLHlAatngkkriiklLL.hGAnlnald 31 
                 G T+LH+Aa+ g++  ++lL+  GA++n++d
  KOO24398.1  71 GETVLHVAARAGDAMLVELLVaAGADVNLKD 101
                 89*******9999********88******99 PP

  == domain 2  score: 0.2 bits;  conditional E-value: 0.41
                 BBHHHHHHHHTTHHHHHHHH.....TT..TSTT CS
         Ank   3 nTPLHlAatngkkriiklLL.....hG..Anln 28 
                 +T+ H+ a ++   ++++LL     hG   +l+
  KOO24398.1 105 RTAMHV-AGGA---VARALLesaerHGqrVDLD 133
                 699999.7566...8999996444334445555 PP

>> Ank_4  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.8   0.0   7.2e-08   0.00021       3      42 ..      73     111 ..      71     114 .. 0.95

  Alignments for each domain:
  == domain 1  score: 21.8 bits;  conditional E-value: 7.2e-08
       Ank_4   3 taLhyaaisgrlelvrlLlekgadinaqdnrsGetalhiA 42 
                 t+Lh aa +g+  lv+lL++ gad+n   + + +ta+h A
  KOO24398.1  73 TVLHVAARAGDAMLVELLVAAGADVNLK-DLQERTAMHVA 111
                 89*************************9.*********87 PP

>> Ank_3  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.0   0.0   2.2e-07   0.00064       2      30 ..      71      98 ..      70      99 .. 0.95

  Alignments for each domain:
  == domain 1  score: 20.0 bits;  conditional E-value: 2.2e-07
       Ank_3  2 GetpLhlAarsgnleivkfLlenkgadvn 30
                Get Lh+Aar+g+  +v++L+   gadvn
  KOO24398.1 71 GETVLHVAARAGDAMLVELLVA-AGADVN 98
                9*************99******.9****9 PP

>> Nop53  Nop53 (60S ribosomal biogenesis)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.1  15.2   0.00025      0.76     195     348 ..     164     321 ..     162     328 .. 0.62

  Alignments for each domain:
  == domain 1  score: 9.1 bits;  conditional E-value: 0.00025
       Nop53 195 edhqellqkaveaEkkrekeeeklerkrekiaekaataeareeelseekdegleeeeeeeeeeeeeeeeeeeesee....eeklnapvkkkpkrKTkaq 289
                  ++++ +++a+    + + ++ + +  +e++++   ++   ee +   +++g+   + +++ ++++ +e ++ + e     +++ a ++ ++ +  ++ 
  KOO24398.1 164 SEWRQRVEAAHSGDYEGLGRKHRPRSSEEAWQSRLREESYFEEAELPGSSSGALGGWGDSQGDSQGGDEAGGRDAEggdwFSEIAAAMAARQAKRAREA 262
                 578888888888888888888888888888888777777777766666666444444433333333222233222344464444445555567777778 PP

       Nop53 290 Rnkekrrkeeekeekeekkekkkeaqlerlkeikkevaekekeraeaaearkkekrkkk 348
                 R+k+++  +e++ e+ + +  +++a++er k+ +++ ++ e++r++a + ++ e r++ 
  KOO24398.1 263 REKAEATAAERRSERDRGQRDAHAASAERQKQAEAAFERFEEARRRADALAQDEARAEA 321
                 88888888888888888888888888888888888888877777777555554444433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (429 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1317  (0.0734564); expected 358.6 (0.02)
Passed bias filter:                      521  (0.0290591); expected 358.6 (0.02)
Passed Vit filter:                        78  (0.00435049); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.57u 0.26s 00:00:00.83 Elapsed: 00:00:00.41
# Mc/sec: 3177.74
//
Query:       KOO24399.1  [L=425]
Description: hypothetical protein Ctob_003801 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (425 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       701  (0.0390987); expected 358.6 (0.02)
Passed bias filter:                      452  (0.0252106); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.52u 0.22s 00:00:00.74 Elapsed: 00:00:00.39
# Mc/sec: 3232.51
//
Query:       KOO24400.1  [L=90]
Description: guanylate cyclase, partial [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.9e-19   69.4   0.0    3.1e-19   69.3   0.0    1.0  1  Guanylate_cyc    Adenylate and Guanylate cyclase catalytic do
      0.003   16.9   0.0     0.0034   16.8   0.0    1.1  1  Arginosuc_synth  Arginosuccinate synthase


Domain annotation for each model (and alignments):
>> Guanylate_cyc  Adenylate and Guanylate cyclase catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.3   0.0   3.5e-23   3.1e-19      33     118 ..       2      89 ..       1      90 [] 0.94

  Alignments for each domain:
  == domain 1  score: 69.3 bits;  conditional E-value: 3.5e-23
  Guanylate_cyc  33 klLnelyarfdelldekkvykvktiGdaymvvsglp..eekaahaaklaelaLdmlealeevaveskeglkvrvGihtGpvvagviGa 118
                     +Ln+l+++fde++++++v+k +t+Gda++ v+g++  ++ +a+a ++a++aL+m+e ++  +  ++ ++ +rvG+h+Gp v gv+G+
     KOO24400.1   2 AMLNDLFTDFDEIAQRHGVTKLETVGDAFVGVAGISgeRDPRAQALQIAHCALEMVECAGRHELPNSGNMLIRVGLHCGPAVGGVVGR 89 
                    69*********************************98878889999*************999988889999***************95 PP

>> Arginosuc_synth  Arginosuccinate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   0.0   3.7e-07    0.0034     233     285 ..       5      57 ..       1      66 [. 0.92

  Alignments for each domain:
  == domain 1  score: 16.8 bits;  conditional E-value: 3.7e-07
  Arginosuc_synth 233 lelieklneiagkhGvGRiDivedRlvglksReiYeapaalvLikahkdlekl 285
                       +l++  +eia +hGv +++ v d +vg+        p a +L  ah +le +
       KOO24400.1   5 NDLFTDFDEIAQRHGVTKLETVGDAFVGVAGISGERDPRAQALQIAHCALEMV 57 
                      5789999************************99999***************87 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (90 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       250  (0.0139439); expected 358.6 (0.02)
Passed bias filter:                      226  (0.0126053); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.33u 0.27s 00:00:00.60 Elapsed: 00:00:00.40
# Mc/sec: 674.24
//
Query:       KOO24401.1  [L=232]
Description: hypothetical protein Ctob_003807 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.14   12.0   0.1       0.27   11.1   0.1    1.4  1  Tudor_3   DNA repair protein Crb2 Tudor domain
        1.2    8.7   6.1        0.9    9.1   1.4    2.3  2  DUF374    Domain of unknown function (DUF374)


Domain annotation for each model (and alignments):
>> Tudor_3  DNA repair protein Crb2 Tudor domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.1     3e-05      0.27       9      43 ..      66      98 ..      60     104 .. 0.85

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 3e-05
                -SSSS--EEEEEEEEEEE-SSSEEEEEETTS-EEE CS
     Tudor_3  9 fkGkkraYYPAtclgvsssgsqrykVrFdDgtpee 43
                ++  + a Y A + g s++++ + +Vr+ D +++e
  KOO24401.1 66 WP-LDEAWYVAVVTGYSHETK-QHEVRYVDDDVVE 98
                66.5899*************8.******9996654 PP

>> DUF374  Domain of unknown function (DUF374)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.1   1.4    0.0001       0.9      34      57 ..     119     142 ..     117     146 .. 0.89
   2 ?    1.8   0.3      0.02   1.8e+02      34      66 ..     146     180 ..     140     181 .. 0.80

  Alignments for each domain:
  == domain 1  score: 9.1 bits;  conditional E-value: 0.0001
      DUF374  34 rGSsskggaealremlralkeges 57 
                 rG+s++g+a+a++em +a  +g +
  KOO24401.1 119 RGASARGAAKATKEMAEAGSKGVT 142
                 9****************9998865 PP

  == domain 2  score: 1.8 bits;  conditional E-value: 0.02
      DUF374  34 rGSsskggaealremlralkeg..esvaitpDgPr 66 
                  GS s  ga++ +++   + eg  + + +t+D Pr
  KOO24401.1 146 KGSISGSGAAVSMAASASTSEGdpSAAELTADCPR 180
                 57888889999999999999996566669999998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (232 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       549  (0.0306208); expected 358.6 (0.02)
Passed bias filter:                      323  (0.0180155); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.40u 0.24s 00:00:00.64 Elapsed: 00:00:00.39
# Mc/sec: 1793.69
//
Query:       KOO24402.1  [L=160]
Description: hypothetical protein Ctob_003806 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (160 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1426  (0.0795359); expected 358.6 (0.02)
Passed bias filter:                      595  (0.0331865); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.39u 0.26s 00:00:00.65 Elapsed: 00:00:00.38
# Mc/sec: 1250.43
//
Query:       KOO24403.1  [L=704]
Description: tap domain-containing protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.8e-11   44.0   0.0    4.5e-11   42.8   0.0    1.7  1  Abhydrolase_4  TAP-like protein
    0.00022   21.0   0.1     0.0044   16.7   0.0    2.5  3  Abhydrolase_1  alpha/beta hydrolase fold


Domain annotation for each model (and alignments):
>> Abhydrolase_4  TAP-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.8   0.0     5e-15   4.5e-11      17     103 .]     563     652 ..     559     652 .. 0.86

  Alignments for each domain:
  == domain 1  score: 42.8 bits;  conditional E-value: 5e-15
  Abhydrolase_4  17 gwpvspqrprdestakgaapvLllqnerDpaTPyegakklakalggavlvtvegeGHga....la.agntCvdkavdaYLltGelpaddtvC 103
                    +wp++p++p +   a   +++L++++ +D  TPy  a+ ++  l++a+ +t++g GH++    +  +g ++  k++++Y++tGelp d+ vC
     KOO24403.1 563 TWPAKPVPPNFGWRA--GVRALVVNSLYDGSTPYLDARWMRFSLPDATFLTWQGVGHCVgsadYDqEGVQACLKKMRHYMKTGELPVDGDVC 652
                    69*******999888..59**************************************9833333333334444889**************99 PP

>> Abhydrolase_1  alpha/beta hydrolase fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.0      0.24   2.1e+03       1      23 [.     149     169 ..     149     185 .. 0.67
   2 !   16.7   0.0   4.9e-07    0.0044      54     104 ..     297     353 ..     230     376 .. 0.75
   3 ?    0.9   0.0     0.032   2.9e+02     187     252 ..     559     619 ..     513     620 .. 0.86

  Alignments for each domain:
  == domain 1  score: -1.9 bits;  conditional E-value: 0.24
                    SEEEEE-STTTCGGGGTTGHHHH CS
  Abhydrolase_1   1 pvlvilhGlpgssdvwaerglap 23 
                    p+l+++ G+pgs d+ a   +++
     KOO24403.1 149 PTLLYHCGGPGSTDSCAF--FQD 169
                    68999********98554..444 PP

  == domain 2  score: 16.7 bits;  conditional E-value: 4.9e-07
                    H......SHHHHHHHHHHHHHHCTTSSEEEEEETHHHHHHHHHHHHHGGGEEEEEEE CS
  Abhydrolase_1  54 y......gtasvaddldrildalgddkltlvGhSmGGmialayaaeyperVkalvll 104
                    +      gt  + +dl+r++ a g + l++ G S+G+ +++ayaa +p+   +l l 
     KOO24403.1 297 FnfldyaGTQLLSRDLERLRLAVGARVLNIDGASYGTGVGSAYAAAFPSTTGRLLLN 353
                    0555555333489**********************************9866666555 PP

  == domain 3  score: 0.9 bits;  conditional E-value: 0.032
                    HHHHHHHHCCHHHHHHHHHCTHHHHSEEEEEEETTCSSSCHHHHHHHHHCHTSEEEEEEETCSSSH CS
  Abhydrolase_1 187 ksieqwpttdsaklllrlrelknvlaptlvisgtsDplvppkaledlaqllpkkrlvvisdagHla 252
                    +++ +wp+++  + ++++ +     + +lv+ + +D+ +p+   + ++  lp+++ ++ ++ gH++
     KOO24403.1 559 FDMLTWPAKPVPPNFGWRAG-----VRALVVNSLYDGSTPYLDARWMRFSLPDATFLTWQGVGHCV 619
                    56788888888888888888.....59**************9999999999999999999999975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (704 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       328  (0.0182944); expected 358.6 (0.02)
Passed bias filter:                      301  (0.0167884); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.55u 0.27s 00:00:00.82 Elapsed: 00:00:00.43
# Mc/sec: 4936.27
//
Query:       KOO24404.1  [L=395]
Description: voltage-gated ion channel superfamily [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.1e-24   86.1   8.6    2.8e-24   85.7   8.6    1.1  1  Ion_trans     Ion transport protein
    1.6e-09   37.6   7.2    1.6e-09   37.6   7.2    2.8  3  Ion_trans_2   Ion channel
     0.0002   21.3   0.0    0.00039   20.4   0.0    1.5  1  cNMP_binding  Cyclic nucleotide-binding domain


Domain annotation for each model (and alignments):
>> Ion_trans  Ion transport protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   85.7   8.6   4.7e-28   2.8e-24       3     228 ..       9     252 ..       7     271 .. 0.74

  Alignments for each domain:
  == domain 1  score: 85.7 bits;  conditional E-value: 4.7e-28
                 HHHHHHHHHHHHHHHHHHCCCSSSSHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHTH............HHHHHHCHSHHHHHHHHHHHHHHH.HH... CS
   Ion_trans   3 vfelfilllillncvflaletyfpedelektileilelvftaiftlemllkilalgl............likkrYlrdpwnilDflvvlpsll.sl... 85 
                 ++++++l+lil+++++++l+ +f+e+  +   + ++e+++ + f+l+ ++ + +  +            +i++rYl+  w+++D  + +p+ l ++   
  KOO24404.1   9 SWDMLMLVLILYSMWMVPLRICFDEE-AT-GCWLAFEILISIAFMLDVVITFNTVVYeattgtwvlsrrQIAQRYLGG-WFWIDAPASVPVELiDItid 104
                 7************************4.44.799*********************777889999***************.9*****99999877444445 PP

                 HHHH......HHHHHHHHHHHHGGGGGGHHHCHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCC........CCSCCSTSSST CS
   Ion_trans  86 vlse......esllllsvlrlfrvlrllklisrleglrtlvtalirsvkdllnvlllllvvlfifaligvqlfkgklrek........necaktwenpn 170
                 +         +sl++l++lrlfr++rll+l++  + +++ + + +++  ++l++ll+ + ++ i  l+g   f   + ++         e +++++  +
  KOO24404.1 105 R--LsnsgdtGSLGALRMLRLFRLFRLLRLLKLGDYIEV-LESAADMNLKFLKILLMKFQLIAIAHLLGCFWFSMYVLNSadpalttwAETYDEGRAVK 200
                 2..044667767777777777777777777766666665.55566666677777777777777777777666633333332333333333666666667 PP

                 TTSSSSSSHHHHHHHHHHHHTTSSHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHH CS
   Ion_trans 171 ngntnFdnfftallwlfrlmttegwgdilyatldekskvaliyfvifiilgsflllNl 228
                 +g+++  +++++++w+  ++tt+g+gd+++++ +e+      ++ i  +l++ l++ +
  KOO24404.1 201 EGTSTSLKYMYSIYWAAITLTTVGYGDVVPVNDSER------MYTIGAMLCAALVFGY 252
                 77777778****************************......6666666666665533 PP

>> Ion_trans_2  Ion channel
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.8   0.1       2.2   1.3e+04      53      65 ..      15      27 ..      12      34 .. 0.57
   2 ?   -0.8   0.2      0.25   1.5e+03       2      15 ..      51      64 ..      35      78 .. 0.67
   3 !   37.6   7.2   2.7e-13   1.6e-09      16      77 ..     192     261 ..     153     263 .. 0.80

  Alignments for each domain:
  == domain 1  score: -3.8 bits;  conditional E-value: 2.2
                 HHHHHHHHHHHHH CS
  Ion_trans_2 53 lftivyillGlal 65
                 l+ i+y ++ ++l
   KOO24404.1 15 LVLILYSMWMVPL 27
                 4445555555555 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 0.25
                 HHHHTCHHHHHHHH CS
  Ion_trans_2  2 vlllvlifgaviys 15
                 +l +v++f +v+y 
   KOO24404.1 51 MLDVVITFNTVVYE 64
                 45555555555555 PP

  == domain 3  score: 37.6 bits;  conditional E-value: 2.7e-13
                  T............T---HHHHHHHHHHHHTTS----SSTT-----HHHHHHHHHHHHHHHHHHHHHHHHH CS
  Ion_trans_2  16 l.......eeg.wekwsfldalYfsfvtltTiGYGdivpetdagrlftivyillGlalfalflavlgkvl 77 
                          +eg + +  ++ ++Y++ +tltT+GYGd+vp++d  r+ ti  +l   ++f++  + +g+v+
   KOO24404.1 192 TydegravKEGtSTSLKYMYSIYWAAITLTTVGYGDVVPVNDSERMYTIGAMLCAALVFGYMASGIGQVV 261
                  05555555455455779999*****************************************999998875 PP

>> cNMP_binding  Cyclic nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.4   0.0   6.5e-08   0.00039       2      32 ..     305     335 ..     304     382 .. 0.84

  Alignments for each domain:
  == domain 1  score: 20.4 bits;  conditional E-value: 6.5e-08
                   EEE-TT-EEE-TTSB-SEEEEEEES-EEEEE CS
  cNMP_binding   2 rsfkagevifrqGdpadslyivlsGevrvyr 32 
                   +s+ +gev+f++G+p + + ++ sGev vy+
    KOO24404.1 305 VSYVKGEVVFKRGEPSRAIMFLSSGEVVVYS 335
                   6899*************************83 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (395 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       546  (0.0304535); expected 358.6 (0.02)
Passed bias filter:                      381  (0.0212505); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.52u 0.23s 00:00:00.75 Elapsed: 00:00:00.42
# Mc/sec: 2815.84
//
Query:       KOO24405.1  [L=1736]
Description: pyrazinamidase nicotinamidase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    8.7e-66  212.3  29.5    8.6e-06   25.3   0.0   12.5 12  EF-hand_6        EF-hand domain
    1.6e-65  211.8  39.7      2e-06   27.0   0.0   12.6 12  EF-hand_1        EF hand
      5e-53  177.4  37.2    1.2e-09   38.4   0.5    7.7  7  EF-hand_7        EF-hand domain pair
      7e-40  132.8  39.7    0.00059   19.2   0.3   12.3 12  EF-hand_5        EF hand
      7e-36  121.9  40.4    4.4e-10   39.3   0.0    9.7 10  EF-hand_8        EF-hand domain pair
    4.8e-19   69.2   0.2    3.9e-17   63.0   0.2    3.5  2  Isochorismatase  Isochorismatase family
    3.6e-05   24.6   0.0        9.9    7.1   0.0    4.0  3  EF-hand_11       EF-hand domain
    0.00017   21.8  11.6        3.4    7.8   0.1    5.7  5  p25-alpha        p25-alpha
     0.0014   18.9  12.9         13    6.1   0.1    6.7  7  SPARC_Ca_bdg     Secreted protein acidic and rich in cysteine
     0.0021   18.0  18.0       0.37   10.8   0.3    6.5  8  EF-hand_4        Cytoskeletal-regulatory complex EF hand
  ------ inclusion threshold ------
       0.49   10.8   1.7      2e+02    2.4   0.0    5.1  4  EF-hand_14       EF-hand domain


Domain annotation for each model (and alignments):
>> EF-hand_6  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.9   0.2   2.3e-05     0.038       7      27 ..     527     547 ..     525     552 .. 0.90
   2 !   17.5   0.0   1.6e-06    0.0027       1      21 [.     558     578 ..     558     581 .. 0.94
   3 !   22.7   0.0   3.7e-08     6e-05       2      31 .]     595     623 ..     594     623 .. 0.91
   4 !   19.8   0.1     3e-07   0.00049       1      27 [.     632     658 ..     632     661 .. 0.92
   5 !   14.1   0.0   2.1e-05     0.034       3      27 ..     710     734 ..     708     737 .. 0.86
   6 !   13.5   0.0   3.2e-05     0.052       1      28 [.     745     772 ..     745     778 .. 0.92
   7 !   15.2   0.2   9.2e-06     0.015       7      27 ..     984    1004 ..     982    1009 .. 0.91
   8 !   16.4   0.0   3.9e-06    0.0063       1      21 [.    1015    1035 ..    1015    1038 .. 0.94
   9 !   22.0   0.0   6.2e-08    0.0001       2      31 .]    1052    1080 ..    1051    1080 .. 0.91
  10 !   19.8   0.1     3e-07   0.00049       1      27 [.    1089    1115 ..    1089    1118 .. 0.92
  11 !   22.5   0.1   4.2e-08   6.9e-05       3      31 .]    1171    1198 ..    1169    1198 .. 0.92
  12 !   25.3   0.0   5.3e-09   8.6e-06       1      27 [.    1205    1231 ..    1205    1242 .. 0.91

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 2.3e-05
   EF-hand_6   7 klfDkdgdGkidaeElrkalr 27 
                 +++D+dgd k+d++E++ + r
  KOO24405.1 527 DAHDVDGDQKLDFDEFVTMVR 547
                 79***************9988 PP

  == domain 2  score: 17.5 bits;  conditional E-value: 1.6e-06
   EF-hand_6   1 elreaFklfDkdgdGkidaeE 21 
                 elre Fk++D+dg+G+id++E
  KOO24405.1 558 ELRERFKAMDVDGSGQIDMNE 578
                 79*****************99 PP

  == domain 3  score: 22.7 bits;  conditional E-value: 3.7e-08
   EF-hand_6   2 lreaFklfDkdgdGkidaeElrkalrkalg 31 
                 + ++Fk++D dg+G++d++E+r+a + a+g
  KOO24405.1 595 VIDLFKQWDEDGSGEVDRKEFRRAVK-AMG 623
                 5799********************99.766 PP

  == domain 4  score: 19.8 bits;  conditional E-value: 3e-07
   EF-hand_6   1 elreaFklfDkdgdGkidaeElrkalr 27 
                 el+ +F+ +D d++G+i+++El +alr
  KOO24405.1 632 ELDMVFNDIDADKSGTISYKELNSALR 658
                 57889*********************9 PP

  == domain 5  score: 14.1 bits;  conditional E-value: 2.1e-05
   EF-hand_6   3 reaFklfDkdgdGkidaeElrkalr 27 
                 +++ k++D dg+G id+ E+rka  
  KOO24405.1 710 KDLMKAIDEDGNGLIDKREWRKAVA 734
                 67889****************9976 PP

  == domain 6  score: 13.5 bits;  conditional E-value: 3.2e-05
   EF-hand_6   1 elreaFklfDkdgdGkidaeElrkalrk 28 
                 e++++F+ +D d +G i+ +El  alr+
  KOO24405.1 745 EMDAVFESIDEDCSGNISLNELTLALRR 772
                 6899**********************95 PP

  == domain 7  score: 15.2 bits;  conditional E-value: 9.2e-06
   EF-hand_6    7 klfDkdgdGkidaeElrkalr 27  
                  +++D+dgd k+d++E++++ r
  KOO24405.1  984 DAHDVDGDQKLDFDEFVAMVR 1004
                  79****************998 PP

  == domain 8  score: 16.4 bits;  conditional E-value: 3.9e-06
   EF-hand_6    1 elreaFklfDkdgdGkidaeE 21  
                  elre Fk++D dg+G+id++E
  KOO24405.1 1015 ELRERFKALDADGSGQIDMNE 1035
                  79*****************99 PP

  == domain 9  score: 22.0 bits;  conditional E-value: 6.2e-08
   EF-hand_6    2 lreaFklfDkdgdGkidaeElrkalrkalg 31  
                  + ++F+++D dg+G++d++E+r+a + a+g
  KOO24405.1 1052 VIDLFRQWDEDGSGEVDRKEFRRAVK-AMG 1080
                  5799********************99.766 PP

  == domain 10  score: 19.8 bits;  conditional E-value: 3e-07
   EF-hand_6    1 elreaFklfDkdgdGkidaeElrkalr 27  
                  el+ +F+ +D d++G+i+++El +alr
  KOO24405.1 1089 ELDMVFNDIDADKSGTISYKELNSALR 1115
                  57889*********************9 PP

  == domain 11  score: 22.5 bits;  conditional E-value: 4.2e-08
   EF-hand_6    3 reaFklfDkdgdGkidaeElrkalrkalg 31  
                   ++Fk +D dg+G+i+++E+r+a + alg
  KOO24405.1 1171 LDLFKDWDDDGNGCISKKEFRQAVT-ALG 1198
                  689********************99.877 PP

  == domain 12  score: 25.3 bits;  conditional E-value: 5.3e-09
   EF-hand_6    1 elreaFklfDkdgdGkidaeElrkalr 27  
                  el+++F+ fD dg+G+id++E++kal 
  KOO24405.1 1205 ELDALFNTFDSDGSGEIDYKEFQKALA 1231
                  6889*********************96 PP

>> EF-hand_1  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.4   4.8e-06    0.0078       9      27 ..     529     547 ..     526     549 .. 0.90
   2 !   17.6   0.1   1.2e-06    0.0019       1      23 [.     558     580 ..     558     582 .. 0.93
   3 !   19.9   0.1   2.2e-07   0.00035       3      29 .]     596     622 ..     594     622 .. 0.91
   4 !   23.3   0.1   1.8e-08   2.9e-05       1      28 [.     632     659 ..     632     660 .. 0.95
   5 !   18.3   0.1     7e-07    0.0011       2      28 ..     709     735 ..     708     736 .. 0.92
   6 !   14.1   0.0   1.6e-05     0.025       1      28 [.     745     772 ..     745     773 .. 0.93
   7 !   15.8   0.3   4.3e-06     0.007       9      27 ..     986    1004 ..     983    1006 .. 0.90
   8 !   16.2   0.0   3.3e-06    0.0054       1      23 [.    1015    1037 ..    1015    1039 .. 0.93
   9 !   20.2   0.1   1.7e-07   0.00028       3      29 .]    1053    1079 ..    1051    1079 .. 0.92
  10 !   23.3   0.1   1.8e-08   2.9e-05       1      28 [.    1089    1116 ..    1089    1117 .. 0.95
  11 !   21.2   0.1   8.5e-08   0.00014       3      28 ..    1171    1196 ..    1169    1197 .. 0.91
  12 !   27.0   0.0   1.2e-09     2e-06       1      27 [.    1205    1231 ..    1205    1233 .. 0.94

  Alignments for each domain:
  == domain 1  score: 15.7 bits;  conditional E-value: 4.8e-06
                 HTTTSSSEEEHHHHHHHHH CS
   EF-hand_1   9 fDkDgdGkIdfeEfkellk 27 
                  D+Dgd k+df+Ef+++++
  KOO24405.1 529 HDVDGDQKLDFDEFVTMVR 547
                 6****************98 PP

  == domain 2  score: 17.6 bits;  conditional E-value: 1.2e-06
                 HHHHHHHHHTTTSSSEEEHHHHH CS
   EF-hand_1   1 elkeiFrefDkDgdGkIdfeEfk 23 
                 el+e F+ +D+Dg+G+Id +E++
  KOO24405.1 558 ELRERFKAMDVDGSGQIDMNEYV 580
                 799*****************986 PP

  == domain 3  score: 19.9 bits;  conditional E-value: 2.2e-07
                 HHHHHHHTTTSSSEEEHHHHHHHHHHH CS
   EF-hand_1   3 keiFrefDkDgdGkIdfeEfkellkkl 29 
                  ++F+  D Dg+G +d++Ef++++k++
  KOO24405.1 596 IDLFKQWDEDGSGEVDRKEFRRAVKAM 622
                 579********************9975 PP

  == domain 4  score: 23.3 bits;  conditional E-value: 1.8e-08
                 HHHHHHHHHTTTSSSEEEHHHHHHHHHH CS
   EF-hand_1   1 elkeiFrefDkDgdGkIdfeEfkellkk 28 
                 el+ +F+++D D++G+I+++E+ ++l++
  KOO24405.1 632 ELDMVFNDIDADKSGTISYKELNSALRS 659
                 799**********************997 PP

  == domain 5  score: 18.3 bits;  conditional E-value: 7e-07
                 HHHHHHHHTTTSSSEEEHHHHHHHHHH CS
   EF-hand_1   2 lkeiFrefDkDgdGkIdfeEfkellkk 28 
                 +k++++ +D Dg+G Id+ E+++++++
  KOO24405.1 709 VKDLMKAIDEDGNGLIDKREWRKAVAA 735
                 7999*******************9875 PP

  == domain 6  score: 14.1 bits;  conditional E-value: 1.6e-05
                 HHHHHHHHHTTTSSSEEEHHHHHHHHHH CS
   EF-hand_1   1 elkeiFrefDkDgdGkIdfeEfkellkk 28 
                 e++ +F+ +D D +G I+++E+  +l++
  KOO24405.1 745 EMDAVFESIDEDCSGNISLNELTLALRR 772
                 6899******************999986 PP

  == domain 7  score: 15.8 bits;  conditional E-value: 4.3e-06
                  HTTTSSSEEEHHHHHHHHH CS
   EF-hand_1    9 fDkDgdGkIdfeEfkellk 27  
                   D+Dgd k+df+Ef+++++
  KOO24405.1  986 HDVDGDQKLDFDEFVAMVR 1004
                  6****************98 PP

  == domain 8  score: 16.2 bits;  conditional E-value: 3.3e-06
                  HHHHHHHHHTTTSSSEEEHHHHH CS
   EF-hand_1    1 elkeiFrefDkDgdGkIdfeEfk 23  
                  el+e F+ +D Dg+G+Id +E++
  KOO24405.1 1015 ELRERFKALDADGSGQIDMNEYV 1037
                  799*****************986 PP

  == domain 9  score: 20.2 bits;  conditional E-value: 1.7e-07
                  HHHHHHHTTTSSSEEEHHHHHHHHHHH CS
   EF-hand_1    3 keiFrefDkDgdGkIdfeEfkellkkl 29  
                   ++Fr  D Dg+G +d++Ef++++k++
  KOO24405.1 1053 IDLFRQWDEDGSGEVDRKEFRRAVKAM 1079
                  579********************9975 PP

  == domain 10  score: 23.3 bits;  conditional E-value: 1.8e-08
                  HHHHHHHHHTTTSSSEEEHHHHHHHHHH CS
   EF-hand_1    1 elkeiFrefDkDgdGkIdfeEfkellkk 28  
                  el+ +F+++D D++G+I+++E+ ++l++
  KOO24405.1 1089 ELDMVFNDIDADKSGTISYKELNSALRS 1116
                  799**********************997 PP

  == domain 11  score: 21.2 bits;  conditional E-value: 8.5e-08
                  HHHHHHHTTTSSSEEEHHHHHHHHHH CS
   EF-hand_1    3 keiFrefDkDgdGkIdfeEfkellkk 28  
                   ++F++ D Dg+G I+++Ef++++++
  KOO24405.1 1171 LDLFKDWDDDGNGCISKKEFRQAVTA 1196
                  579********************987 PP

  == domain 12  score: 27.0 bits;  conditional E-value: 1.2e-09
                  HHHHHHHHHTTTSSSEEEHHHHHHHHH CS
   EF-hand_1    1 elkeiFrefDkDgdGkIdfeEfkellk 27  
                  el+ +F+ fD Dg+G Id++Ef+++l+
  KOO24405.1 1205 ELDALFNTFDSDGSGEIDYKEFQKALA 1231
                  799*********************986 PP

>> EF-hand_7  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.2   1.4   3.4e-11   5.5e-08       8      67 ..     526     580 ..     521     583 .. 0.86
   2 !   29.8   1.5   3.7e-10   6.1e-07       4      69 ..     595     656 ..     592     658 .. 0.87
   3 !   30.7   0.0     2e-10   3.3e-07       5      66 ..     710     766 ..     707     771 .. 0.88
   4 !   34.3   1.6   1.5e-11   2.4e-08       8      67 ..     983    1037 ..     978    1041 .. 0.90
   5 !   30.3   1.2   2.7e-10   4.4e-07       4      69 ..    1052    1113 ..    1049    1115 .. 0.87
   6 !   35.9   0.7   4.6e-12   7.6e-09       3      70 ..    1089    1194 ..    1087    1195 .. 0.82
   7 !   38.4   0.5   7.6e-13   1.2e-09       6      69 ..    1172    1229 ..    1168    1231 .. 0.88

  Alignments for each domain:
  == domain 1  score: 33.2 bits;  conditional E-value: 3.4e-11
   EF-hand_7   8 FkelDtdgdgyldkeellrllrkifqgagegsklsdeelellfkefDtdkdGvisfdEFl 67 
                 ++++D+dgd +ld +e+  ++r      +e+   ++eel++ fk +D d++G+i+++E++
  KOO24405.1 526 YDAHDVDGDQKLDFDEFVTMVRE-----REAGMHTEEELRERFKAMDVDGSGQIDMNEYV 580
                 899*************9989995.....4444447788********************96 PP

  == domain 2  score: 29.8 bits;  conditional E-value: 3.7e-10
   EF-hand_7   4 lkeaFkelDtdgdgyldkeellrllrkifqgagegsklsdeelellfkefDtdkdGvisfdEFlkl 69 
                 + + Fk+ D dg+g +d+ e++r+++++    g ++   d el+ +f+++D dk+G+is+ E+  +
  KOO24405.1 595 VIDLFKQWDEDGSGEVDRKEFRRAVKAM----GFDFFANDAELDMVFNDIDADKSGTISYKELNSA 656
                 5678**********************76....5555567899********************9876 PP

  == domain 3  score: 30.7 bits;  conditional E-value: 2e-10
   EF-hand_7   5 keaFkelDtdgdgyldkeellrllrkifqgagegsklsdeelellfkefDtdkdGvisfdEF 66 
                 k+  k++D dg+g +dk+e ++++ ++    g +  +s++e++++f+ +D d++G is++E+
  KOO24405.1 710 KDLMKAIDEDGNGLIDKREWRKAVAAF----GIE-AMSRKEMDAVFESIDEDCSGNISLNEL 766
                 566789*******************96....555.45899*********************7 PP

  == domain 4  score: 34.3 bits;  conditional E-value: 1.5e-11
   EF-hand_7    8 FkelDtdgdgyldkeellrllrkifqgagegsklsdeelellfkefDtdkdGvisfdEFl 67  
                  ++++D+dgd +ld +e+  ++r      +e+ + +++el++ fk +D d++G+i+++E++
  KOO24405.1  983 YDAHDVDGDQKLDFDEFVAMVRE-----REEGEHTEKELRERFKALDADGSGQIDMNEYV 1037
                  899*************9999997.....666666************************96 PP

  == domain 5  score: 30.3 bits;  conditional E-value: 2.7e-10
   EF-hand_7    4 lkeaFkelDtdgdgyldkeellrllrkifqgagegsklsdeelellfkefDtdkdGvisfdEFlkl 69  
                  + + F++ D dg+g +d+ e++r+++++    g ++   d el+ +f+++D dk+G+is+ E+  +
  KOO24405.1 1052 VIDLFRQWDEDGSGEVDRKEFRRAVKAM----GFDFFANDAELDMVFNDIDADKSGTISYKELNSA 1113
                  5678**********************76....5555567899********************9876 PP

  == domain 6  score: 35.9 bits;  conditional E-value: 4.6e-12
   EF-hand_7    3 klkeaFkelDtdgdgyldkeellrllrkifqga......................................gegsklsd....ee..lellfkefDt 55  
                  +l ++F+ +D d++g +++ el ++lr+++                                         +      +    ++  + +lfk++D 
  KOO24405.1 1089 ELDMVFNDIDADKSGTISYKELNSALRSFKPPPpkalrkedpqdrkrkgrtafkttiqfdpnssasvqqqlR------EllakHSvrVLDLFKDWDD 1179
                  68899*******************99987544499999999999****999999999998887775554331......23322334478******** PP

   EF-hand_7   56 dkdGvisfdEFlkly 70  
                  d++G+is  EF++++
  KOO24405.1 1180 DGNGCISKKEFRQAV 1194
                  ************987 PP

  == domain 7  score: 38.4 bits;  conditional E-value: 7.6e-13
   EF-hand_7    6 eaFkelDtdgdgyldkeellrllrkifqgagegsklsdeelellfkefDtdkdGvisfdEFlkl 69  
                  + Fk  D dg+g ++k e+++++++       g   +++el++lf+ fD+d++G+i++ EF+k+
  KOO24405.1 1172 DLFKDWDDDGNGCISKKEFRQAVTA------LGLAAPKKELDALFNTFDSDGSGEIDYKEFQKA 1229
                  68**********************5......555555789**********************98 PP

>> EF-hand_5  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.3   0.2     0.081   1.3e+02       9      25 .]     530     546 ..     527     546 .. 0.91
   2 !   17.2   0.0   1.6e-06    0.0025       2      21 ..     560     579 ..     559     583 .. 0.89
   3 !   15.4   0.2   5.9e-06    0.0097       2      23 ..     596     617 ..     595     620 .. 0.89
   4 !   16.3   0.1     3e-06     0.005       4      22 ..     636     654 ..     633     657 .. 0.89
   5 !   16.0   0.1   3.7e-06     0.006       2      23 ..     710     731 ..     709     734 .. 0.91
   6 !    7.2   0.0    0.0023       3.8       2      21 ..     747     766 ..     746     772 .. 0.91
   7 ?    1.4   0.2      0.15   2.5e+02       9      24 ..     987    1002 ..     984    1003 .. 0.88
   8 !   17.0   0.0   1.8e-06    0.0029       2      21 ..    1017    1036 ..    1016    1040 .. 0.89
   9 !   16.1   0.2   3.5e-06    0.0057       2      23 ..    1053    1074 ..    1052    1077 .. 0.90
  10 !   16.3   0.1     3e-06     0.005       4      22 ..    1093    1111 ..    1090    1114 .. 0.89
  11 !    8.3   0.2     0.001       1.7       3      23 ..    1172    1192 ..    1170    1194 .. 0.89
  12 !   19.2   0.3   3.6e-07   0.00059       1      23 [.    1206    1228 ..    1206    1231 .. 0.91

  Alignments for each domain:
  == domain 1  score: 2.3 bits;  conditional E-value: 0.081
                 -SS-SSCE-HHHHHHHH CS
   EF-hand_5   9 DlNgDGkIskeELktlv 25 
                 D++gD k++++E+ t+v
  KOO24405.1 530 DVDGDQKLDFDEFVTMV 546
                 99***********9976 PP

  == domain 2  score: 17.2 bits;  conditional E-value: 1.6e-06
                 HHHHHHH-SS-SSCE-HHHH CS
   EF-hand_5   2 kdtFqaiDlNgDGkIskeEL 21 
                 ++ F+a+D++g+G+I++ E 
  KOO24405.1 560 RERFKAMDVDGSGQIDMNEY 579
                 667**************995 PP

  == domain 3  score: 15.4 bits;  conditional E-value: 5.9e-06
                 HHHHHHH-SS-SSCE-HHHHHH CS
   EF-hand_5   2 kdtFqaiDlNgDGkIskeELkt 23 
                  d+F++ D +g+G +++ E+++
  KOO24405.1 596 IDLFKQWDEDGSGEVDRKEFRR 617
                 589*****************98 PP

  == domain 4  score: 16.3 bits;  conditional E-value: 3e-06
                 HHHHH-SS-SSCE-HHHHH CS
   EF-hand_5   4 tFqaiDlNgDGkIskeELk 22 
                 +F+ iD++++G+Is  EL 
  KOO24405.1 636 VFNDIDADKSGTISYKELN 654
                 8****************96 PP

  == domain 5  score: 16.0 bits;  conditional E-value: 3.7e-06
                 HHHHHHH-SS-SSCE-HHHHHH CS
   EF-hand_5   2 kdtFqaiDlNgDGkIskeELkt 23 
                 kd+ +aiD +g G I+k E+++
  KOO24405.1 710 KDLMKAIDEDGNGLIDKREWRK 731
                 7999****************97 PP

  == domain 6  score: 7.2 bits;  conditional E-value: 0.0023
                 HHHHHHH-SS-SSCE-HHHH CS
   EF-hand_5   2 kdtFqaiDlNgDGkIskeEL 21 
                 +++F+ iD + +G Is  EL
  KOO24405.1 747 DAVFESIDEDCSGNISLNEL 766
                 789****************9 PP

  == domain 7  score: 1.4 bits;  conditional E-value: 0.15
                  -SS-SSCE-HHHHHHH CS
   EF-hand_5    9 DlNgDGkIskeELktl 24  
                  D++gD k++++E+ ++
  KOO24405.1  987 DVDGDQKLDFDEFVAM 1002
                  99***********876 PP

  == domain 8  score: 17.0 bits;  conditional E-value: 1.8e-06
                  HHHHHHH-SS-SSCE-HHHH CS
   EF-hand_5    2 kdtFqaiDlNgDGkIskeEL 21  
                  ++ F+a+D++g+G+I++ E 
  KOO24405.1 1017 RERFKALDADGSGQIDMNEY 1036
                  667**************995 PP

  == domain 9  score: 16.1 bits;  conditional E-value: 3.5e-06
                  HHHHHHH-SS-SSCE-HHHHHH CS
   EF-hand_5    2 kdtFqaiDlNgDGkIskeELkt 23  
                   d+F++ D +g+G +++ E+++
  KOO24405.1 1053 IDLFRQWDEDGSGEVDRKEFRR 1074
                  589*****************98 PP

  == domain 10  score: 16.3 bits;  conditional E-value: 3e-06
                  HHHHH-SS-SSCE-HHHHH CS
   EF-hand_5    4 tFqaiDlNgDGkIskeELk 22  
                  +F+ iD++++G+Is  EL 
  KOO24405.1 1093 VFNDIDADKSGTISYKELN 1111
                  8****************96 PP

  == domain 11  score: 8.3 bits;  conditional E-value: 0.001
                  HHHHHH-SS-SSCE-HHHHHH CS
   EF-hand_5    3 dtFqaiDlNgDGkIskeELkt 23  
                  d+F+  D +g G Isk E+++
  KOO24405.1 1172 DLFKDWDDDGNGCISKKEFRQ 1192
                  679999*************97 PP

  == domain 12  score: 19.2 bits;  conditional E-value: 3.6e-07
                  HHHHHHHH-SS-SSCE-HHHHHH CS
   EF-hand_5    1 lkdtFqaiDlNgDGkIskeELkt 23  
                  l+++F+ +D +g+G I+  E+++
  KOO24405.1 1206 LDALFNTFDSDGSGEIDYKEFQK 1228
                  6889*****************97 PP

>> EF-hand_8  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.9   0.5    0.0017       2.8      34      54 ..     528     548 ..     527     549 .. 0.89
   2 !   16.6   2.5   3.2e-06    0.0052       2      49 ..     534     580 ..     533     583 .. 0.84
   3 !   23.3   0.7   2.7e-08   4.3e-05       2      48 ..     607     653 ..     606     658 .. 0.87
   4 !    6.3   0.1    0.0054       8.8      30      47 ..     711     728 ..     709     733 .. 0.88
   5 !   18.9   0.3   6.1e-07     0.001       2      47 ..     721     765 ..     720     770 .. 0.95
   6 !    8.7   0.4   0.00094       1.5      34      54 ..     985    1005 ..     984    1006 .. 0.90
   7 !   17.0   1.1   2.4e-06    0.0039       2      49 ..     991    1037 ..     990    1040 .. 0.87
   8 !    7.9   0.0    0.0016       2.6      30      51 ..    1054    1075 ..    1052    1078 .. 0.88
   9 !   23.3   0.6   2.6e-08   4.3e-05       2      48 ..    1064    1110 ..    1063    1115 .. 0.87
  10 !   39.3   0.0   2.7e-13   4.4e-10       2      48 ..    1182    1226 ..    1181    1231 .. 0.95

  Alignments for each domain:
  == domain 1  score: 7.9 bits;  conditional E-value: 0.0017
   EF-hand_8  34 efDtdgdGkisfeEFcvller 54 
                 ++D dgd k++f+EF+ ++ +
  KOO24405.1 528 AHDVDGDQKLDFDEFVTMVRE 548
                 7899*************9976 PP

  == domain 2  score: 16.6 bits;  conditional E-value: 3.2e-06
   EF-hand_8   2 kgkItreelrrilrilglkk..glseeevdilfrefDtdgdGkisfeEFc 49 
                 ++k++++e+++++r     +    +eee+++ f+++D dg+G i+ +E++
  KOO24405.1 534 DQKLDFDEFVTMVRER---EagMHTEEELRERFKAMDVDGSGQIDMNEYV 580
                 89*********77332...143469999*******************986 PP

  == domain 3  score: 23.3 bits;  conditional E-value: 2.7e-08
   EF-hand_8   2 kgkItreelrrilrilglkk..glseeevdilfrefDtdgdGkisfeEF 48 
                 +g+++r e+rr+++++g       ++ e+d++f+ +D d++G+is++E 
  KOO24405.1 607 SGEVDRKEFRRAVKAMG--FdfFANDAELDMVFNDIDADKSGTISYKEL 653
                 79*********997765..256789999*******************95 PP

  == domain 4  score: 6.3 bits;  conditional E-value: 0.0054
   EF-hand_8  30 ilfrefDtdgdGkisfeE 47 
                 +l++++D+dg+G i++ E
  KOO24405.1 711 DLMKAIDEDGNGLIDKRE 728
                 79************9866 PP

  == domain 5  score: 18.9 bits;  conditional E-value: 6.1e-07
   EF-hand_8   2 kgkItreelrrilrilglkkglseeevdilfrefDtdgdGkisfeE 47 
                 +g I++ e r++++++g++  +s +e+d++f  +D+d++G is++E
  KOO24405.1 721 NGLIDKREWRKAVAAFGIEA-MSRKEMDAVFESIDEDCSGNISLNE 765
                 799**********999***8.************************9 PP

  == domain 6  score: 8.7 bits;  conditional E-value: 0.00094
   EF-hand_8   34 efDtdgdGkisfeEFcvller 54  
                  ++D dgd k++f+EF++++ +
  KOO24405.1  985 AHDVDGDQKLDFDEFVAMVRE 1005
                  789***************976 PP

  == domain 7  score: 17.0 bits;  conditional E-value: 2.4e-06
   EF-hand_8    2 kgkItreelrrilrilglkk....glseeevdilfrefDtdgdGkisfeEFc 49  
                  ++k++++e++ ++r     +      +e+e+++ f+++D dg+G i+ +E++
  KOO24405.1  991 DQKLDFDEFVAMVR-----EreegEHTEKELRERFKALDADGSGQIDMNEYV 1037
                  899********664.....223579************************986 PP

  == domain 8  score: 7.9 bits;  conditional E-value: 0.0016
   EF-hand_8   30 ilfrefDtdgdGkisfeEFcvl 51  
                  +lfr  D+dg+G ++ +EF   
  KOO24405.1 1054 DLFRQWDEDGSGEVDRKEFRRA 1075
                  59*****************866 PP

  == domain 9  score: 23.3 bits;  conditional E-value: 2.6e-08
   EF-hand_8    2 kgkItreelrrilrilglkk..glseeevdilfrefDtdgdGkisfeEF 48  
                  +g+++r e+rr+++++g       ++ e+d++f+ +D d++G+is++E 
  KOO24405.1 1064 SGEVDRKEFRRAVKAMG--FdfFANDAELDMVFNDIDADKSGTISYKEL 1110
                  79*********997765..256789999*******************95 PP

  == domain 10  score: 39.3 bits;  conditional E-value: 2.7e-13
   EF-hand_8    2 kgkItreelrrilrilglkkglseeevdilfrefDtdgdGkisfeEF 48  
                  +g+I++ e+r ++++lgl+    ++e+d+lf++fD dg+G i+++EF
  KOO24405.1 1182 NGCISKKEFRQAVTALGLA--APKKELDALFNTFDSDGSGEIDYKEF 1226
                  79***********999***..************************** PP

>> Isochorismatase  Isochorismatase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.5   0.0      0.18   2.9e+02       2      35 ..     851     889 ..     850     933 .. 0.79
   2 !   63.0   0.2   2.4e-20   3.9e-17      55     170 ..    1285    1419 ..    1264    1422 .. 0.88

  Alignments for each domain:
  == domain 1  score: 1.5 bits;  conditional E-value: 0.18
  Isochorismatase   2 alvviDmqndfv.....eegvkeseeisavveninkllk 35 
                      al+++ +qnd++      + + +  e  +v++ in l +
       KOO24405.1 851 ALLIVNVQNDLIdgtmaLRYCAAGQEGYEVIPVINALRR 889
                      9***********998776777777778888888887755 PP

  == domain 2  score: 63.0 bits;  conditional E-value: 2.4e-20
  Isochorismatase   55 evkgdlderkaaphfkpgttgaelvpelaple.gdvvvdKt......rfsaf............agtdldeiLkelgiktivlaGiatdvCV 127 
                       + k + ++r  ++h+++ t+ga+l++ela ++ +d  v          fsaf             +t+l++ Lk++gi++++++G+  d  V
       KOO24405.1 1285 DGKAPMPTRLLPRHCVQMTWGAKLHEELALDArKDLQVLQGtraelcSFSAFhdygfhdklnnlHSTGLHAELKKAGITHVYVCGLPFDHAV 1376
                       45678889999*********************98888874445688888888**************************************** PP

  Isochorismatase  128 eatardaldlGyevvvvsDAvaalspelhdaalkrlkqafatv 170 
                        +ta++a++ G+ + vv+DA+ a + ++++++ +rl++a  ++
       KOO24405.1 1377 THTALHAAEAGFVTSVVEDACRAADLDGVAKSRARLEAASIQL 1419
                       ********************************99999766655 PP

>> EF-hand_11  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.5   0.0    0.0093        15      13      92 ..     586     666 ..     574     679 .. 0.79
   2 ?    5.7   0.0     0.016        27      14      91 ..    1044    1122 ..    1034    1130 .. 0.78
   3 !    7.1   0.0    0.0061       9.9      11      84 ..    1159    1232 ..    1151    1247 .. 0.85

  Alignments for each domain:
  == domain 1  score: 6.5 bits;  conditional E-value: 0.0093
                 HHHHHSHHHHHHHHHHH-TT-SSEE-HHHHH.HHHHHHT---.-HHHHHHHHHTS-B-TTS-EEHHHHHHHHCS-.------ CS
  EF-hand_11  13 kavashyhaivqefenfdtlksntvsreefr.aictrrvqil.tdeqfdrlwselpvnakgrlkyqdflsklsiervaatpm 92 
                  a+a     +++ f+++d   s  v r+efr a+ +   + +  d ++d +++++  +  g + y+++ s l +   + +p 
  KOO24405.1 586 DALARSSSRVIDLFKQWDEDGSGEVDRKEFRrAVKAMGFDFFaNDAELDMVFNDIDADKSGTISYKELNSALRSF-KPPPPK 666
                 56666667788899999999**********72555666776526889*********************9999887.444554 PP

  == domain 2  score: 5.7 bits;  conditional E-value: 0.016
                  HHHHSHHHHHHHHHHH-TT-SSEE-HHHHH.HHHHHHT---.-HHHHHHHHHTS-B-TTS-EEHHHHHHHHCS-.----- CS
  EF-hand_11   14 avashyhaivqefenfdtlksntvsreefr.aictrrvqil.tdeqfdrlwselpvnakgrlkyqdflsklsiervaatp 91  
                  a+a     +++ f ++d   s  v r+efr a+ +   + +  d ++d +++++  +  g + y+++ s l +   + +p
  KOO24405.1 1044 ALARSSSRVIDLFRQWDEDGSGEVDRKEFRrAVKAMGFDFFaNDAELDMVFNDIDADKSGTISYKELNSALRSF-KPPPP 1122
                  566666678888999999999********72555666776526889*********************9999876.44444 PP

  == domain 3  score: 7.1 bits;  conditional E-value: 0.0061
                  HHHHHHHSHHHHHHHHHHH-TT-SSEE-HHHHHHHHHHHT----HHHHHHHHHTS-B-TTS-EEHHHHHHHHCS CS
  EF-hand_11   11 lqkavashyhaivqefenfdtlksntvsreefraictrrvqiltdeqfdrlwselpvnakgrlkyqdflsklsi 84  
                  l+  +a h   + + f+++d      +s++efr  +t        +++d l++ +  +  g + y++f   l+ 
  KOO24405.1 1159 LRELLAKHSVRVLDLFKDWDDDGNGCISKKEFRQAVTALGLAAPKKELDALFNTFDSDGSGEIDYKEFQKALAP 1232
                  666778899999999******99***********9999888889999*********************887765 PP

>> p25-alpha  p25-alpha
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   2.0       3.6   5.8e+03      48      88 ..     409     449 ..     385     475 .. 0.70
   2 !    7.6   0.0    0.0025         4      15      71 ..     605     660 ..     597     693 .. 0.88
   3 ?    3.4   0.0     0.048        79      20      91 ..     724     793 ..     714     814 .. 0.75
   4 !    7.8   0.1    0.0021       3.4      15      71 ..    1062    1117 ..    1054    1160 .. 0.84
   5 !    5.9   0.0     0.008        13      42      78 ..    1204    1240 ..    1182    1275 .. 0.81

  Alignments for each domain:
  == domain 1  score: -2.7 bits;  conditional E-value: 3.6
   p25-alpha  48 FsKvkaksarkitfeqfkealeelaekkfkkkkkeeeleli 88 
                  + vkak a  ++++++++ l++ ++++ +     e++  +
  KOO24405.1 409 LASVKAKVAAAVKVASTTQLLQQKVDEAAAARAAAEAKAAA 449
                 56799999999999999999999998866666666665222 PP

  == domain 2  score: 7.6 bits;  conditional E-value: 0.0025
   p25-alpha  15 ktgkemdnknfsKlckDckiidkkvtstdvDiiFsKvkaksarkitfeqfkealeel 71 
                 +++ e+d+k+f + +k  +  d   +  + D++F+ + a ++ +i++++ + al+ +
  KOO24405.1 605 DGSGEVDRKEFRRAVKAMGF-DFFANDAELDMVFNDIDADKSGTISYKELNSALRSF 660
                 457899**********9998.999999**************************9865 PP

  == domain 3  score: 3.4 bits;  conditional E-value: 0.048
   p25-alpha  20 mdnknfsKlckDckiidkkvtstdvDiiFsKvkaksarkitfeqfkealeelaekkfkkkkkeeeleliekl 91 
                 +d++++ K +   +i  +++  +++D +F+ + +  + +i++++ + al+    +  +++ ++++ +++ k 
  KOO24405.1 724 IDKREWRKAVAAFGI--EAMSRKEMDAVFESIDEDCSGNISLNELTLALRRALRDVRRQEASVKRQQEVTKR 793
                 677778888877777..89999****************************9999955555555544333333 PP

  == domain 4  score: 7.8 bits;  conditional E-value: 0.0021
   p25-alpha   15 ktgkemdnknfsKlckDckiidkkvtstdvDiiFsKvkaksarkitfeqfkealeel 71  
                  +++ e+d+k+f + +k  +  d   +  + D++F+ + a ++ +i++++ + al+ +
  KOO24405.1 1062 DGSGEVDRKEFRRAVKAMGF-DFFANDAELDMVFNDIDADKSGTISYKELNSALRSF 1117
                  4578999********99998.999999**************************9876 PP

  == domain 5  score: 5.9 bits;  conditional E-value: 0.008
   p25-alpha   42 tdvDiiFsKvkaksarkitfeqfkealeelaekkfkk 78  
                  ++ D +F+ + + ++ +i++++f++al  l  k  +k
  KOO24405.1 1204 KELDALFNTFDSDGSGEIDYKEFQKALAPLRPKPKPK 1240
                  6789***********************9998884444 PP

>> SPARC_Ca_bdg  Secreted protein acidic and rich in cysteine Ca binding region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.7   0.1     0.022        35      57     111 ..     523     580 ..     464     582 .. 0.78
   2 ?    2.6   0.1     0.098   1.6e+02      59     110 ..     598     653 ..     586     656 .. 0.76
   3 ?    0.3   0.0       0.5   8.2e+02      90     111 ..     709     730 ..     696     732 .. 0.88
   4 ?   -3.5   0.0         8   1.3e+04      91     110 ..     747     766 ..     738     768 .. 0.76
   5 ?    4.5   0.1     0.025        41      58     111 ..     981    1037 ..     969    1042 .. 0.85
   6 ?    2.2   0.0      0.13   2.2e+02      59     110 ..    1055    1110 ..    1041    1113 .. 0.75
   7 !    6.1   0.1    0.0081        13      40     111 ..    1154    1227 ..    1126    1229 .. 0.78

  Alignments for each domain:
  == domain 1  score: 4.7 bits;  conditional E-value: 0.022
  SPARC_Ca_bdg  57 awkFsklDtnsdkvlsksELapl...raplvklehCikpflescDadkdkkislkEwc 111
                   a +++  D++ d+ l+  E   +   r+  +++e+  ++ +++ D+d  ++i+++E++
    KOO24405.1 523 AMQYDAHDVDGDQKLDFDEFVTMvreREAGMHTEEELRERFKAMDVDGSGQIDMNEYV 580
                   45788999999********9887333344678899999999***************96 PP

  == domain 2  score: 2.6 bits;  conditional E-value: 0.098
  SPARC_Ca_bdg  59 kFsklDtnsdkvlsksELa....plraplvklehCikpflescDadkdkkislkEw 110
                    F+++D +  + ++++E +    ++  ++  ++   +  ++  Dadk ++is kE 
    KOO24405.1 598 LFKQWDEDGSGEVDRKEFRravkAMGFDFFANDAELDMVFNDIDADKSGTISYKEL 653
                   58999999999999999752111455567888999999999999999999999985 PP

  == domain 3  score: 0.3 bits;  conditional E-value: 0.5
  SPARC_Ca_bdg  90 ikpflescDadkdkkislkEwc 111
                   +k ++++ D d ++ i+++Ew 
    KOO24405.1 709 VKDLMKAIDEDGNGLIDKREWR 730
                   5788999**************6 PP

  == domain 4  score: -3.5 bits;  conditional E-value: 8
  SPARC_Ca_bdg  91 kpflescDadkdkkislkEw 110
                   ++ +es D d  ++isl+E 
    KOO24405.1 747 DAVFESIDEDCSGNISLNEL 766
                   56788888888888888885 PP

  == domain 5  score: 4.5 bits;  conditional E-value: 0.025
  SPARC_Ca_bdg   58 wkFsklDtnsdkvlsksELaplraplvklehCikpf...lescDadkdkkislkEwc 111 
                     +++  D++ d+ l+  E  ++  +  + eh  k++   +++ Dad  ++i+++E++
    KOO24405.1  981 MQYDAHDVDGDQKLDFDEFVAMVREREEGEHTEKELrerFKALDADGSGQIDMNEYV 1037
                    5789999***********999988777777776655444999*************96 PP

  == domain 6  score: 2.2 bits;  conditional E-value: 0.13
  SPARC_Ca_bdg   59 kFsklDtnsdkvlsksELa....plraplvklehCikpflescDadkdkkislkEw 110 
                     F ++D +  + ++++E +    ++  ++  ++   +  ++  Dadk ++is kE 
    KOO24405.1 1055 LFRQWDEDGSGEVDRKEFRravkAMGFDFFANDAELDMVFNDIDADKSGTISYKEL 1110
                    58899999888899888752111445567788888999999999999999999985 PP

  == domain 7  score: 6.1 bits;  conditional E-value: 0.0081
  SPARC_Ca_bdg   40 lekkeeeknlkeckepvawkFsklDtnsdkvlsksELaplrap..lvklehCikpflescDadkdkkislkEwc 111 
                     ++++ ++ l++++  v   F+++D + ++ +sk+E ++  +   l    +  ++++++ D+d  ++i+ kE+ 
    KOO24405.1 1154 SVQQQLRELLAKHSVRVLDLFKDWDDDGNGCISKKEFRQAVTAlgLAAPKKELDALFNTFDSDGSGEIDYKEFQ 1227
                    45555555666666666778*****************98665512567788899******************97 PP

>> EF-hand_4  Cytoskeletal-regulatory complex EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.8   0.3   0.00023      0.37      49      70 ..     526     547 ..     497     549 .. 0.84
   2 ?    2.4   0.0     0.091   1.5e+02      42      67 ..     556     581 ..     550     602 .. 0.84
   3 ?   -2.9   0.0         4   6.6e+03      49      76 ..     599     627 ..     585     632 .. 0.71
   4 ?   -1.5   0.0       1.5   2.5e+03      40      76 ..     741     777 ..     730     792 .. 0.79
   5 !   10.2   0.1   0.00034      0.55      49      70 ..     983    1004 ..     977    1005 .. 0.86
   6 ?   -1.0   0.0         1   1.7e+03      43      67 ..    1014    1038 ..    1008    1059 .. 0.81
   7 ?   -2.9   0.0       4.2   6.8e+03      42      69 ..    1087    1114 ..    1066    1115 .. 0.83
   8 ?    1.1   0.1      0.22   3.7e+02      42      66 ..    1203    1227 ..    1172    1231 .. 0.85

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00023
   EF-hand_4  49 wdladidedgkldfeefciamr 70 
                 +d  d+d d kldf+ef+ ++r
  KOO24405.1 526 YDAHDVDGDQKLDFDEFVTMVR 547
                 6789*************98776 PP

  == domain 2  score: 2.4 bits;  conditional E-value: 0.091
   EF-hand_4  42 edklekiwdladidedgkldfeefci 67 
                 e++l + ++  d+d  g++d++e+++
  KOO24405.1 556 EEELRERFKAMDVDGSGQIDMNEYVL 581
                 56788888999************986 PP

  == domain 3  score: -2.9 bits;  conditional E-value: 4
   EF-hand_4  49 wdladidedgkldfeefciamrli.fdlv 76 
                 ++  d d  g++d +ef  a++ + fd+ 
  KOO24405.1 599 FKQWDEDGSGEVDRKEFRRAVKAMgFDFF 627
                 44557788899******988774337765 PP

  == domain 4  score: -1.5 bits;  conditional E-value: 1.5
   EF-hand_4  40 leedklekiwdladidedgkldfeefciamrlifdlv 76 
                 ++ ++++ +++  d d  g++ ++e+++a+r  +  v
  KOO24405.1 741 MSRKEMDAVFESIDEDCSGNISLNELTLALRRALRDV 777
                 566788899999999999**********998665544 PP

  == domain 5  score: 10.2 bits;  conditional E-value: 0.00034
   EF-hand_4   49 wdladidedgkldfeefciamr 70  
                  +d  d+d d kldf+ef+ ++r
  KOO24405.1  983 YDAHDVDGDQKLDFDEFVAMVR 1004
                  6778*************98765 PP

  == domain 6  score: -1.0 bits;  conditional E-value: 1
   EF-hand_4   43 dklekiwdladidedgkldfeefci 67  
                  ++l + ++  d d  g++d++e+++
  KOO24405.1 1014 KELRERFKALDADGSGQIDMNEYVL 1038
                  566666777899**********986 PP

  == domain 7  score: -2.9 bits;  conditional E-value: 4.2
   EF-hand_4   42 edklekiwdladidedgkldfeefciam 69  
                  + +l+ +++  d d+ g++ ++e+  a+
  KOO24405.1 1087 DAELDMVFNDIDADKSGTISYKELNSAL 1114
                  6778889988899999999999986655 PP

  == domain 8  score: 1.1 bits;  conditional E-value: 0.22
   EF-hand_4   42 edklekiwdladidedgkldfeefc 66  
                  +++l+ +++  d d  g++d++ef 
  KOO24405.1 1203 KKELDALFNTFDSDGSGEIDYKEFQ 1227
                  67899999999*************6 PP

>> EF-hand_14  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.1   0.0      0.75   1.2e+03       3      28 ..     634     659 ..     632     661 .. 0.93
   2 ?    0.4   0.0      0.53   8.7e+02       3      28 ..     747     772 ..     745     804 .. 0.85
   3 ?    0.4   0.0      0.54   8.8e+02       3      29 ..    1091    1117 ..    1089    1132 .. 0.88
   4 ?    2.4   0.0      0.12     2e+02       3      27 ..    1207    1231 ..    1205    1233 .. 0.94

  Alignments for each domain:
  == domain 1  score: -0.1 bits;  conditional E-value: 0.75
  EF-hand_14   3 dllfdlfkdeetdklsvakllkaLae 28 
                 d++f+ ++ ++++++s ++l +aL++
  KOO24405.1 634 DMVFNDIDADKSGTISYKELNSALRS 659
                 89*********************987 PP

  == domain 2  score: 0.4 bits;  conditional E-value: 0.53
  EF-hand_14   3 dllfdlfkdeetdklsvakllkaLae 28 
                 d++f++++++ ++++s+++l+ aL+ 
  KOO24405.1 747 DAVFESIDEDCSGNISLNELTLALRR 772
                 99******************999986 PP

  == domain 3  score: 0.4 bits;  conditional E-value: 0.54
  EF-hand_14    3 dllfdlfkdeetdklsvakllkaLaet 29  
                  d++f+ ++ ++++++s ++l +aL+++
  KOO24405.1 1091 DMVFNDIDADKSGTISYKELNSALRSF 1117
                  89**********************975 PP

  == domain 4  score: 2.4 bits;  conditional E-value: 0.12
  EF-hand_14    3 dllfdlfkdeetdklsvakllkaLa 27  
                  d+lf++f++++++++  +++ kaLa
  KOO24405.1 1207 DALFNTFDSDGSGEIDYKEFQKALA 1231
                  89********************997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1736 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2022  (0.112778); expected 358.6 (0.02)
Passed bias filter:                      446  (0.0248759); expected 358.6 (0.02)
Passed Vit filter:                       128  (0.00713927); expected 17.9 (0.001)
Passed Fwd filter:                        37  (0.0020637); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 1.59u 0.38s 00:00:01.97 Elapsed: 00:00:00.57
# Mc/sec: 9236.03
//
Query:       KOO24406.1  [L=422]
Description: allergen cup a 4 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.6e-49  160.5  34.7      4e-07   29.4   0.5    8.3  8  EF-hand_6        EF-hand domain
    3.5e-48  161.9  23.3    1.5e-12   47.8   1.2    4.2  4  EF-hand_7        EF-hand domain pair
    2.5e-44  145.5  42.0    1.1e-05   24.6   0.7    8.4  8  EF-hand_1        EF hand
    2.5e-40  134.2  44.3    1.5e-06   27.4   0.6    8.6  8  EF-hand_5        EF hand
    9.6e-24   83.0  39.9    2.4e-08   33.7   0.8    8.3  8  EF-hand_8        EF-hand domain pair
    2.9e-06   27.5   0.3         10    6.5   0.0    6.3  7  EF-hand_9        EF-hand domain
    6.7e-06   26.4   5.1         31    5.0   0.0    7.0  6  EF-hand_14       EF-hand domain
    3.2e-05   24.2   8.2         14    6.0   0.0    6.7  7  SPARC_Ca_bdg     Secreted protein acidic and rich in cysteine
    4.6e-05   23.4  15.1       0.32   10.9   2.5    6.9  6  Caleosin         Caleosin related protein
    0.00015   21.6   0.8        7.2    6.3   0.0    4.3  4  Ad_Cy_reg        Adenylate cyclase regulatory domain
    0.00026   20.9   0.1         12    5.9   0.0    4.1  4  DUF2744          Protein of unknown function (DUF2744)
    0.00045   20.7  22.9        1.1    9.9   0.1    6.7  7  VCBS             Repeat domain in Vibrio, Colwellia, Bradyrhi
    0.00066   19.8   7.3        5.4    7.3   0.1    5.8  6  Dockerin_1       Dockerin type I domain
  ------ inclusion threshold ------
      0.011   16.1   3.7        3.8    7.8   0.2    3.2  3  PCP              Peridinin-chlorophyll A binding protein
      0.014   15.7   0.7         14    6.1   0.0    3.7  4  PI-PLC-Y         Phosphatidylinositol-specific phospholipase 
      0.079   12.7   1.5         25    4.5   0.0    3.3  3  MukF_M           MukF middle domain
      0.081   13.4   1.1         21    5.6   0.1    3.3  3  Lipoprotein_10   Putative mycoplasma lipoprotein, C-terminal 
       0.17   11.7  10.4         16    5.4   0.0    5.1  7  Barwin           Barwin family
        0.2   12.1   2.0         14    6.1   0.2    3.2  3  Phage_lysozyme   Phage lysozyme
       0.38   11.2   9.4         20    5.7   0.1    5.2  6  Toprim_2         Toprim-like
       0.48   10.3   1.9         49    3.8   0.0    4.3  6  Cleaved_Adhesin  Cleaved Adhesin Domain
        1.7    8.7  13.9         47    4.1   0.0    6.2  7  DUF5640          Family of unknown function (DUF5640)
        1.8    8.6  14.9         14    5.7   0.0    5.3  5  EF-hand_4        Cytoskeletal-regulatory complex EF hand


Domain annotation for each model (and alignments):
>> EF-hand_6  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.5   0.1   4.2e-08   3.3e-05       5      31 .]      26      51 ..      25      51 .. 0.92
   2 !   11.6   0.4   0.00027      0.21       4      26 ..      65      87 ..      63      94 .. 0.86
   3 !   24.9   0.4   1.5e-08   1.1e-05       1      31 []     121     150 ..     121     150 .. 0.95
   4 !   23.1   0.1   5.4e-08   4.2e-05       3      27 ..     163     187 ..     161     194 .. 0.91
   5 !   26.3   0.4   5.2e-09   4.1e-06       1      31 []     220     249 ..     220     249 .. 0.93
   6 !   21.9   0.1   1.3e-07    0.0001       4      27 ..     263     286 ..     260     295 .. 0.89
   7 !   29.4   0.5   5.2e-10     4e-07       2      31 .]     320     348 ..     319     348 .. 0.92
   8 !   20.2   0.1   4.7e-07   0.00036       4      24 ..     362     382 ..     361     390 .. 0.90

  Alignments for each domain:
  == domain 1  score: 23.5 bits;  conditional E-value: 4.2e-08
   EF-hand_6  5 aFklfDkdgdGkidaeElrkalrkalg 31
                +F +fD dgdGk+d+ El +a+r a g
  KOO24406.1 26 LFAQFDADGDGKLDIYELARAFR-AIG 51
                8*********************9.765 PP

  == domain 2  score: 11.6 bits;  conditional E-value: 0.00027
   EF-hand_6  4 eaFklfDkdgdGkidaeElrkal 26
                + Fk f +d+dG++d++E+ + +
  KOO24406.1 65 ATFKSFGTDKDGYVDMKEIDANM 87
                57****************97655 PP

  == domain 3  score: 24.9 bits;  conditional E-value: 1.5e-08
   EF-hand_6   1 elreaFklfDkdgdGkidaeElrkalrkalg 31 
                 +++++F +fD dgdGk+d+ ++ +a+r alg
  KOO24406.1 121 DMKKIFAQFDADGDGKLDIYQIARAFR-ALG 150
                 589************************.887 PP

  == domain 4  score: 23.1 bits;  conditional E-value: 5.4e-08
   EF-hand_6   3 reaFklfDkdgdGkidaeElrkalr 27 
                 +e Fk fD++gdG++++eE+ k l+
  KOO24406.1 163 KEMFKSFDTNGDGYVSMEEFDKNLK 187
                 589*****************88776 PP

  == domain 5  score: 26.3 bits;  conditional E-value: 5.2e-09
   EF-hand_6   1 elreaFklfDkdgdGkidaeElrkalrkalg 31 
                 +++++F +fD dgdGk+d+ E+ +a+r a+g
  KOO24406.1 220 DMKQIFAQFDADGDGKLDIYEIARAFR-AMG 249
                 589***********************9.776 PP

  == domain 6  score: 21.9 bits;  conditional E-value: 1.3e-07
   EF-hand_6   4 eaFklfDkdgdGkidaeElrkalr 27 
                 + Fk fD+dgdG++++eEl + l+
  KOO24406.1 263 AMFKSFDTDGDGYVSMEELDANLK 286
                 68*****************87766 PP

  == domain 7  score: 29.4 bits;  conditional E-value: 5.2e-10
   EF-hand_6   2 lreaFklfDkdgdGkidaeElrkalrkalg 31 
                 + ++Fk fD+dgdGk+++ E+++a+r a+g
  KOO24406.1 320 MADIFKGFDTDGDGKLTMREFQRAFR-AMG 348
                 5689**********************.776 PP

  == domain 8  score: 20.2 bits;  conditional E-value: 4.7e-07
   EF-hand_6   4 eaFklfDkdgdGkidaeElrk 24 
                 + F+ fD+dgdG+i+  E++ 
  KOO24406.1 362 AMFDSFDTDGDGYISLVEFQE 382
                 68*****************96 PP

>> EF-hand_7  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.7   0.4   5.4e-12   4.2e-09       7      66 ..      26      83 ..      20      87 .. 0.87
   2 !   45.4   1.1     1e-14     8e-12       4      66 ..     122     182 ..     120     186 .. 0.87
   3 !   46.2   1.1   6.1e-15   4.7e-12       2      66 ..     219     281 ..     218     284 .. 0.87
   4 !   47.8   1.2   1.9e-15   1.5e-12       2      68 ..     318     382 ..     317     385 .. 0.83

  Alignments for each domain:
  == domain 1  score: 36.7 bits;  conditional E-value: 5.4e-12
   EF-hand_7  7 aFkelDtdgdgyldkeellrllrkifqgagegsklsdeelellfkefDtdkdGvisfdEF 66
                 F ++D dgdg+ld  el r++r+i   ++ g +++ ++  + fk f tdkdG++++ E 
  KOO24406.1 26 LFAQFDADGDGKLDIYELARAFRAIGLEKRQGGDSDMDK--ATFKSFGTDKDGYVDMKEI 83
                5************************99985555555555..****************995 PP

  == domain 2  score: 45.4 bits;  conditional E-value: 1e-14
   EF-hand_7   4 lkeaFkelDtdgdgyldkeellrllrkifqgagegsklsdeelellfkefDtdkdGvisfdEF 66 
                 +k +F ++D dgdg+ld  ++ r++r++   ++ g k+  ++  ++fk fDt++dG++s++EF
  KOO24406.1 122 MKKIFAQFDADGDGKLDIYQIARAFRALGLPKRDGTKMEMDK--EMFKSFDTNGDGYVSMEEF 182
                 6889**********************9987665555555555..******************* PP

  == domain 3  score: 46.2 bits;  conditional E-value: 6.1e-15
   EF-hand_7   2 eklkeaFkelDtdgdgyldkeellrllrkifqgagegsklsdeelellfkefDtdkdGvisfdEF 66 
                 +++k++F ++D dgdg+ld  e+ r++r++   ++ g+k+  ++  ++fk fDtd+dG++s++E+
  KOO24406.1 219 YDMKQIFAQFDADGDGKLDIYEIARAFRAMGLPKRDGEKMEMDK--AMFKSFDTDGDGYVSMEEL 281
                 899*************************8877765555555555..*****************96 PP

  == domain 4  score: 47.8 bits;  conditional E-value: 1.9e-15
   EF-hand_7   2 eklkeaFkelDtdgdgyldkeellrllrkifqgagegsklsdeele.llfkefDtdkdGvisfdEFlk 68 
                 + + ++Fk +Dtdgdg+l+++e++r++r++      + + ++ e++ ++f+ fDtd+dG+is+ EF++
  KOO24406.1 318 YNMADIFKGFDTDGDGKLTMREFQRAFRAMGLP---KRDGTKMEVDkAMFDSFDTDGDGYISLVEFQE 382
                 678899**********************87744...444444555559******************98 PP

>> EF-hand_1  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.2   0.1   1.8e-07   0.00014       5      28 ..      26      49 ..      25      50 .. 0.92
   2 !    9.7   0.3   0.00084      0.65       4      21 ..      65      82 ..      64      85 .. 0.89
   3 !   21.5   0.3   1.4e-07   0.00011       2      28 ..     122     148 ..     121     149 .. 0.90
   4 !   24.4   1.1   1.7e-08   1.3e-05       3      22 ..     163     182 ..     163     184 .. 0.95
   5 !   23.9   0.6   2.3e-08   1.8e-05       2      29 .]     221     248 ..     220     248 .. 0.93
   6 !   22.8   0.2   5.3e-08   4.1e-05       3      22 ..     262     281 ..     262     283 .. 0.94
   7 !   24.6   0.7   1.5e-08   1.1e-05       4      29 .]     322     347 ..     320     347 .. 0.93
   8 !   24.3   0.5   1.7e-08   1.3e-05       3      24 ..     361     382 ..     361     382 .. 0.93

  Alignments for each domain:
  == domain 1  score: 21.2 bits;  conditional E-value: 1.8e-07
                HHHHHTTTSSSEEEHHHHHHHHHH CS
   EF-hand_1  5 iFrefDkDgdGkIdfeEfkellkk 28
                +F+ fD DgdGk+d+ E+ +++++
  KOO24406.1 26 LFAQFDADGDGKLDIYELARAFRA 49
                69******************9986 PP

  == domain 2  score: 9.7 bits;  conditional E-value: 0.00084
                HHHHHHTTTSSSEEEHHH CS
   EF-hand_1  4 eiFrefDkDgdGkIdfeE 21
                  F+ f +D+dG++d +E
  KOO24406.1 65 ATFKSFGTDKDGYVDMKE 82
                679************999 PP

  == domain 3  score: 21.5 bits;  conditional E-value: 1.4e-07
                 HHHHHHHHTTTSSSEEEHHHHHHHHHH CS
   EF-hand_1   2 lkeiFrefDkDgdGkIdfeEfkellkk 28 
                 +k+iF+ fD DgdGk+d+ +  +++++
  KOO24406.1 122 MKKIFAQFDADGDGKLDIYQIARAFRA 148
                 79****************999999886 PP

  == domain 4  score: 24.4 bits;  conditional E-value: 1.7e-08
                 HHHHHHHTTTSSSEEEHHHH CS
   EF-hand_1   3 keiFrefDkDgdGkIdfeEf 22 
                 ke+F+ fD++gdG+++ eEf
  KOO24406.1 163 KEMFKSFDTNGDGYVSMEEF 182
                 79*****************9 PP

  == domain 5  score: 23.9 bits;  conditional E-value: 2.3e-08
                 HHHHHHHHTTTSSSEEEHHHHHHHHHHH CS
   EF-hand_1   2 lkeiFrefDkDgdGkIdfeEfkellkkl 29 
                 +k+iF+ fD DgdGk+d+ E  ++++++
  KOO24406.1 221 MKQIFAQFDADGDGKLDIYEIARAFRAM 248
                 79*********************99975 PP

  == domain 6  score: 22.8 bits;  conditional E-value: 5.3e-08
                 HHHHHHHTTTSSSEEEHHHH CS
   EF-hand_1   3 keiFrefDkDgdGkIdfeEf 22 
                 k +F+ fD+DgdG+++ eE+
  KOO24406.1 262 KAMFKSFDTDGDGYVSMEEL 281
                 68*****************8 PP

  == domain 7  score: 24.6 bits;  conditional E-value: 1.5e-08
                 HHHHHHTTTSSSEEEHHHHHHHHHHH CS
   EF-hand_1   4 eiFrefDkDgdGkIdfeEfkellkkl 29 
                 +iF+ fD+DgdGk++  Ef+++++++
  KOO24406.1 322 DIFKGFDTDGDGKLTMREFQRAFRAM 347
                 79********************9975 PP

  == domain 8  score: 24.3 bits;  conditional E-value: 1.7e-08
                 HHHHHHHTTTSSSEEEHHHHHH CS
   EF-hand_1   3 keiFrefDkDgdGkIdfeEfke 24 
                 k +F+ fD+DgdG+I++ Ef+e
  KOO24406.1 361 KAMFDSFDTDGDGYISLVEFQE 382
                 68******************85 PP

>> EF-hand_5  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.4   0.2   3.2e-07   0.00025       4      23 ..      26      45 ..      25      47 .. 0.88
   2 !    9.2   0.3    0.0011      0.86       2      21 ..      64      83 ..      62      87 .. 0.87
   3 !   17.1   1.7   3.6e-06    0.0028       1      17 [.     122     138 ..     122     139 .. 0.90
   4 !   27.4   0.6   1.9e-09   1.5e-06       3      23 ..     164     184 ..     161     187 .. 0.84
   5 !   18.9   0.3   9.6e-07   0.00075       2      20 ..     222     240 ..     221     245 .. 0.84
   6 !   26.3   0.3   4.4e-09   3.4e-06       2      22 ..     262     282 ..     260     286 .. 0.87
   7 !   22.1   0.6   9.3e-08   7.2e-05       2      23 ..     321     342 ..     320     344 .. 0.89
   8 !   21.2   0.5   1.8e-07   0.00014       2      23 ..     361     382 ..     359     384 .. 0.90

  Alignments for each domain:
  == domain 1  score: 20.4 bits;  conditional E-value: 3.2e-07
                HHHHH-SS-SSCE-HHHHHH CS
   EF-hand_5  4 tFqaiDlNgDGkIskeELkt 23
                +F ++D++gDGk+++ EL +
  KOO24406.1 26 LFAQFDADGDGKLDIYELAR 45
                7*************999965 PP

  == domain 2  score: 9.2 bits;  conditional E-value: 0.0011
                HHHHHHH-SS-SSCE-HHHH CS
   EF-hand_5  2 kdtFqaiDlNgDGkIskeEL 21
                k+tF+ + +++DG++++ E 
  KOO24406.1 64 KATFKSFGTDKDGYVDMKEI 83
                46999999*********995 PP

  == domain 3  score: 17.1 bits;  conditional E-value: 3.6e-06
                 HHHHHHHH-SS-SSCE- CS
   EF-hand_5   1 lkdtFqaiDlNgDGkIs 17 
                 +k+ F ++D++gDGk++
  KOO24406.1 122 MKKIFAQFDADGDGKLD 138
                 5789***********99 PP

  == domain 4  score: 27.4 bits;  conditional E-value: 1.9e-09
                 HHHHHH-SS-SSCE-HHHHHH CS
   EF-hand_5   3 dtFqaiDlNgDGkIskeELkt 23 
                 ++F+ +D+NgDG++s+eE+ +
  KOO24406.1 164 EMFKSFDTNGDGYVSMEEFDK 184
                 59*****************54 PP

  == domain 5  score: 18.9 bits;  conditional E-value: 9.6e-07
                 HHHHHHH-SS-SSCE-HHH CS
   EF-hand_5   2 kdtFqaiDlNgDGkIskeE 20 
                 k+ F ++D++gDGk+++ E
  KOO24406.1 222 KQIFAQFDADGDGKLDIYE 240
                 678************9855 PP

  == domain 6  score: 26.3 bits;  conditional E-value: 4.4e-09
                 HHHHHHH-SS-SSCE-HHHHH CS
   EF-hand_5   2 kdtFqaiDlNgDGkIskeELk 22 
                 k++F+ +D++gDG++s+eEL 
  KOO24406.1 262 KAMFKSFDTDGDGYVSMEELD 282
                 469****************95 PP

  == domain 7  score: 22.1 bits;  conditional E-value: 9.3e-08
                 HHHHHHH-SS-SSCE-HHHHHH CS
   EF-hand_5   2 kdtFqaiDlNgDGkIskeELkt 23 
                  d F+ +D++gDGk+++ E+++
  KOO24406.1 321 ADIFKGFDTDGDGKLTMREFQR 342
                 578999**************98 PP

  == domain 8  score: 21.2 bits;  conditional E-value: 1.8e-07
                 HHHHHHH-SS-SSCE-HHHHHH CS
   EF-hand_5   2 kdtFqaiDlNgDGkIskeELkt 23 
                 k++F+ +D++gDG+Is  E+++
  KOO24406.1 361 KAMFDSFDTDGDGYISLVEFQE 382
                 469**************99986 PP

>> EF-hand_8  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.3   0.1    0.0013         1      30      45 ..      25      40 ..       8      48 .. 0.82
   2 ?    4.7   0.4     0.034        27      12      47 ..      45      82 ..      41      83 .. 0.74
   3 ?    5.9   0.5     0.014        11      31      44 ..     125     138 ..     121     139 .. 0.90
   4 !   21.0   0.3   2.8e-07   0.00022      15      48 ..     147     182 ..     143     183 .. 0.81
   5 !    8.2   0.2    0.0027       2.1      26      45 ..     219     238 ..     216     247 .. 0.80
   6 !   17.7   0.7     3e-06    0.0023      30      47 ..     263     280 ..     243     281 .. 0.79
   7 !   16.4   0.6   7.8e-06    0.0061      25      48 ..     317     340 ..     313     340 .. 0.91
   8 !   33.7   0.8   3.1e-11   2.4e-08       2      48 ..     332     380 ..     332     382 .. 0.93

  Alignments for each domain:
  == domain 1  score: 9.3 bits;  conditional E-value: 0.0013
   EF-hand_8 30 ilfrefDtdgdGkisf 45
                +lf  fD dgdGk++ 
  KOO24406.1 25 ALFAQFDADGDGKLDI 40
                79***********985 PP

  == domain 2  score: 4.7 bits;  conditional E-value: 0.034
   EF-hand_8 12 rilrilglkk.glseeevd.ilfrefDtdgdGkisfeE 47
                r+ r++gl+k + +++++d + f+ f td+dG+++ +E
  KOO24406.1 45 RAFRAIGLEKrQGGDSDMDkATFKSFGTDKDGYVDMKE 82
                555666777777777776546699999*******9887 PP

  == domain 3  score: 5.9 bits;  conditional E-value: 0.014
   EF-hand_8  31 lfrefDtdgdGkis 44 
                 +f  fD dgdGk++
  KOO24406.1 125 IFAQFDADGDGKLD 138
                 7889********97 PP

  == domain 4  score: 21.0 bits;  conditional E-value: 2.8e-07
   EF-hand_8  15 rilglkk.glseeevd.ilfrefDtdgdGkisfeEF 48 
                 r+lgl+k + ++ e+d ++f+ fDt+gdG++s eEF
  KOO24406.1 147 RALGLPKrDGTKMEMDkEMFKSFDTNGDGYVSMEEF 182
                 667777777777775549*****************9 PP

  == domain 5  score: 8.2 bits;  conditional E-value: 0.0027
   EF-hand_8  26 eevdilfrefDtdgdGkisf 45 
                 +++  +f  fD dgdGk++ 
  KOO24406.1 219 YDMKQIFAQFDADGDGKLDI 238
                 56666899*********985 PP

  == domain 6  score: 17.7 bits;  conditional E-value: 3e-06
   EF-hand_8  30 ilfrefDtdgdGkisfeE 47 
                 ++f+ fDtdgdG++s eE
  KOO24406.1 263 AMFKSFDTDGDGYVSMEE 280
                 7**************999 PP

  == domain 7  score: 16.4 bits;  conditional E-value: 7.8e-06
   EF-hand_8  25 eeevdilfrefDtdgdGkisfeEF 48 
                 ++++ ++f+ fDtdgdGk++  EF
  KOO24406.1 317 KYNMADIFKGFDTDGDGKLTMREF 340
                 678889**************9998 PP

  == domain 8  score: 33.7 bits;  conditional E-value: 3.1e-11
   EF-hand_8   2 kgkItreelrrilrilglkk.glseeevd.ilfrefDtdgdGkisfeEF 48 
                 +gk+t+ e++r+ r++gl+k + ++ evd ++f+ fDtdgdG+is+ EF
  KOO24406.1 332 DGKLTMREFQRAFRAMGLPKrDGTKMEVDkAMFDSFDTDGDGYISLVEF 380
                 79*********99999*****8888887769***************999 PP

>> EF-hand_9  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.0       2.7   2.1e+03       3      29 ..      26      52 ..      25      63 .. 0.81
   2 ?    2.0   0.0      0.34   2.6e+02       2      20 ..      65      83 ..      64      90 .. 0.90
   3 ?    4.2   0.0      0.07        55       2      59 ..     124     183 ..     123     189 .. 0.72
   4 ?    1.6   0.0      0.44   3.4e+02       3      25 ..     165     187 ..     163     196 .. 0.77
   5 ?    0.7   0.0      0.87   6.8e+02       2      30 ..     223     251 ..     222     260 .. 0.84
   6 ?    6.5   0.0     0.013        10       2      32 ..     263     292 ..     262     303 .. 0.83
   7 ?    4.2   0.0      0.07        55       3      58 ..     323     380 ..     321     388 .. 0.69

  Alignments for each domain:
  == domain 1  score: -0.9 bits;  conditional E-value: 2.7
   EF-hand_9  3 vFevcDtqktGrVpvsrlidyLravta 29
                +F  +D +  G+  + +l    ra + 
  KOO24406.1 26 LFAQFDADGDGKLDIYELARAFRAIGL 52
                689999999999999999888888776 PP

  == domain 2  score: 2.0 bits;  conditional E-value: 0.34
   EF-hand_9  2 tvFevcDtqktGrVpvsrl 20
                ++F+ + t+k G V ++++
  KOO24406.1 65 ATFKSFGTDKDGYVDMKEI 83
                79**************998 PP

  == domain 3  score: 4.2 bits;  conditional E-value: 0.07
   EF-hand_9   2 tvFevcDtqktGrVpvsrlidyLravtaq..dpeeseLe.elakelDPdgedasvdldtfl 59 
                  +F  +D +  G+  + ++    ra + +  d + +e++ e  k++D +g  + v ++ f 
  KOO24406.1 124 KIFAQFDADGDGKLDIYQIARAFRALGLPkrDGTKMEMDkEMFKSFDTNGD-GYVSMEEFD 183
                 578899999999999999999999999873333444444457778887777.777777775 PP

  == domain 4  score: 1.6 bits;  conditional E-value: 0.44
   EF-hand_9   3 vFevcDtqktGrVpvsrlidyLr 25 
                 +F+ +Dt+  G V + +  + L+
  KOO24406.1 165 MFKSFDTNGDGYVSMEEFDKNLK 187
                 79999**9999999987666555 PP

  == domain 5  score: 0.7 bits;  conditional E-value: 0.87
   EF-hand_9   2 tvFevcDtqktGrVpvsrlidyLravtaq 30 
                  +F  +D +  G+  + ++    ra++ +
  KOO24406.1 223 QIFAQFDADGDGKLDIYEIARAFRAMGLP 251
                 68999***********9999999998875 PP

  == domain 6  score: 6.5 bits;  conditional E-value: 0.013
   EF-hand_9   2 tvFevcDtqktGrVpvsrlidyLravtaqdp 32 
                 ++F+ +Dt+  G V + +l + L+  t    
  KOO24406.1 263 AMFKSFDTDGDGYVSMEELDANLKPKTR-RK 292
                 78*****************999998887.44 PP

  == domain 7  score: 4.2 bits;  conditional E-value: 0.07
   EF-hand_9   3 vFevcDtqktGrVpvsrlidyLravtaqdpeeseLeelakelDPdge..dasvdldtf 58 
                 +F+ +Dt+  G+ ++ +     ra++ ++    ++e  ++++D  +   d+ + l  f
  KOO24406.1 323 IFKGFDTDGDGKLTMREFQRAFRAMGLPKRDGTKMEVDKAMFDSFDTdgDGYISLVEF 380
                 6999999999999999999999999997655556655555555333222356666555 PP

>> EF-hand_14  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.5   0.1      0.12        92       5      33 ..      26      54 ..      23     118 .. 0.89
   2 ?    2.9   0.0      0.18   1.4e+02       5      35 ..     125     155 ..     122     161 .. 0.93
   3 ?    1.3   0.0      0.58   4.5e+02       5      27 ..     165     187 ..     161     193 .. 0.88
   4 ?    4.4   0.0     0.061        48       5      36 ..     224     255 ..     221     284 .. 0.83
   5 ?    5.0   0.0     0.039        31       5      35 ..     323     353 ..     320     355 .. 0.93
   6 ?    2.6   0.0      0.22   1.7e+02       3      28 ..     361     386 ..     359     411 .. 0.87

  Alignments for each domain:
  == domain 1  score: 3.5 bits;  conditional E-value: 0.12
  EF-hand_14  5 lfdlfkdeetdklsvakllkaLaetGirk 33
                lf  f+ ++++kl + +l +a ++ G++k
  KOO24406.1 26 LFAQFDADGDGKLDIYELARAFRAIGLEK 54
                89999999999999999999999999987 PP

  == domain 2  score: 2.9 bits;  conditional E-value: 0.18
  EF-hand_14   5 lfdlfkdeetdklsvakllkaLaetGirkdD 35 
                 +f  f+ ++++kl + ++ +a ++ G+ k D
  KOO24406.1 125 IFAQFDADGDGKLDIYQIARAFRALGLPKRD 155
                 8999***********************9988 PP

  == domain 3  score: 1.3 bits;  conditional E-value: 0.58
  EF-hand_14   5 lfdlfkdeetdklsvakllkaLa 27 
                 +f++f++++++ +s++++ k+L+
  KOO24406.1 165 MFKSFDTNGDGYVSMEEFDKNLK 187
                 7999**9***********99997 PP

  == domain 4  score: 4.4 bits;  conditional E-value: 0.061
  EF-hand_14   5 lfdlfkdeetdklsvakllkaLaetGirkdDp 36 
                 +f  f+ ++++kl + ++ +a +++G+ k D 
  KOO24406.1 224 IFAQFDADGDGKLDIYEIARAFRAMGLPKRDG 255
                 899999999999*************9999885 PP

  == domain 5  score: 5.0 bits;  conditional E-value: 0.039
  EF-hand_14   5 lfdlfkdeetdklsvakllkaLaetGirkdD 35 
                 +f+ f++++++kl + ++ +a +++G+ k D
  KOO24406.1 323 IFKGFDTDGDGKLTMREFQRAFRAMGLPKRD 353
                 8999***********************9988 PP

  == domain 6  score: 2.6 bits;  conditional E-value: 0.22
  EF-hand_14   3 dllfdlfkdeetdklsvakllkaLae 28 
                  ++fd+f++++++ +s+ ++ ++++ 
  KOO24406.1 361 KAMFDSFDTDGDGYISLVEFQENIQP 386
                 679*****************999875 PP

>> SPARC_Ca_bdg  Secreted protein acidic and rich in cysteine Ca binding region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.9   0.0      0.33   2.6e+02      58      78 ..      25      45 ..      13      85 .. 0.71
   2 ?   -0.4   0.0       1.8   1.4e+03      60      78 ..      67      85 ..      53      99 .. 0.79
   3 ?    4.6   1.7     0.051        40      60     110 ..     126     182 ..      79     185 .. 0.56
   4 ?    4.9   0.0      0.04        31      59      77 ..     165     183 ..     152     201 .. 0.76
   5 ?    5.8   0.1     0.021        17      52     109 ..     217     280 ..     205     281 .. 0.58
   6 ?    5.4   0.0     0.029        22      59      77 ..     264     282 ..     251     289 .. 0.86
   7 ?    6.0   0.0     0.019        14      54     111 ..     318     381 ..     305     383 .. 0.64

  Alignments for each domain:
  == domain 1  score: 1.9 bits;  conditional E-value: 0.33
  SPARC_Ca_bdg 58 wkFsklDtnsdkvlsksELap 78
                    F ++D + d+ l+  ELa 
    KOO24406.1 25 ALFAQFDADGDGKLDIYELAR 45
                  557788888888888887764 PP

  == domain 2  score: -0.4 bits;  conditional E-value: 1.8
  SPARC_Ca_bdg 60 FsklDtnsdkvlsksELap 78
                  F+++ t++d++++ +E+++
    KOO24406.1 67 FKSFGTDKDGYVDMKEIDA 85
                  7777888888888888864 PP

  == domain 3  score: 4.6 bits;  conditional E-value: 0.051
  SPARC_Ca_bdg  60 FsklDtnsdkvlsksELaplrapl.......vklehCikpflescDadkdkkislkEw 110
                   F ++D + d+ l+   +a     l        k+e+  k++++s D++ d+ +s++E+
    KOO24406.1 126 FAQFDADGDGKLDIYQIARAFRALglpkrdgTKMEM-DKEMFKSFDTNGDGYVSMEEF 182
                   666666666666655555433222111111123333.456778888888888888887 PP

  == domain 4  score: 4.9 bits;  conditional E-value: 0.04
  SPARC_Ca_bdg  59 kFsklDtnsdkvlsksELa 77 
                   +F+++Dtn d+++s +E +
    KOO24406.1 165 MFKSFDTNGDGYVSMEEFD 183
                   5666666666666666654 PP

  == domain 5  score: 5.8 bits;  conditional E-value: 0.021
  SPARC_Ca_bdg  52 ckepvawkFsklDtnsdkvlsksELaplrapl.......vklehCikpflescDadkdkkislkE 109
                    k+ ++  F ++D + d+ l+  E+a     +        k+e   k++++s D+d d+ +s++E
    KOO24406.1 217 KKYDMKQIFAQFDADGDGKLDIYEIARAFRAMglpkrdgEKME-MDKAMFKSFDTDGDGYVSMEE 280
                   5666666778888888888888877643222211111112222.246677777777777777776 PP

  == domain 6  score: 5.4 bits;  conditional E-value: 0.029
  SPARC_Ca_bdg  59 kFsklDtnsdkvlsksELa 77 
                   +F+++Dt+ d+++s +EL+
    KOO24406.1 264 MFKSFDTDGDGYVSMEELD 282
                   89999*********99997 PP

  == domain 7  score: 6.0 bits;  conditional E-value: 0.019
  SPARC_Ca_bdg  54 epvawkFsklDtnsdkvlsksELapl.rapl......vklehCikpflescDadkdkkislkEwc 111
                   +++a  F+ +Dt+ d+ l+ +E +   ra         k+e   k++++s D+d d+ isl E+ 
    KOO24406.1 318 YNMADIFKGFDTDGDGKLTMREFQRAfRAMGlpkrdgTKME-VDKAMFDSFDTDGDGYISLVEFQ 381
                   55555678888888888888887653133221111112232.35789999999999999999986 PP

>> Caleosin  Caleosin related protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.8   0.0     0.031        24      11      36 ..      28      53 ..      22      56 .. 0.90
   2 ?   -1.9   0.0       3.5   2.7e+03      98     121 ..      66      89 ..      64     124 .. 0.63
   3 !   10.9   2.5   0.00041      0.32       6     120 ..     122     246 ..     117     252 .. 0.83
   4 ?   -0.3   0.0       1.1   8.6e+02      12      25 ..     267     280 ..     257     287 .. 0.76
   5 !    6.5   0.1     0.009         7      89     120 ..     314     345 ..     281     351 .. 0.69
   6 ?    1.6   0.0      0.29   2.3e+02      13      26 ..     367     380 ..     356     392 .. 0.84

  Alignments for each domain:
  == domain 1  score: 4.8 bits;  conditional E-value: 0.031
    Caleosin 11 aFfDrdkdGiiypldtyrgfralgfn 36
                a fD d dG +   +  r+fra+g++
  KOO24406.1 28 AQFDADGDGKLDIYELARAFRAIGLE 53
                569********************985 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 3.5
    Caleosin  98 ifskyakekkdaltlkevlellkg 121
                 +f+ + ++k++++ +ke+ + ++ 
  KOO24406.1  66 TFKSFGTDKDGYVDMKEIDANMND 89 
                 577777777777777777655444 PP

  == domain 3  score: 10.9 bits;  conditional E-value: 0.00041
    Caleosin   6 LqqHvaFfDrdkdGiiypldtyrgfralgfnvllsllaalvihlalsyptlps.........wlpdplfriyvknihkakhgSdsgaYdee.Grfvpqk 94 
                 +++ +a fD d dG +   ++ r+fralg+     + + +  +++ s  t+ +         +  +p  r +++ni +a  + d  a++++ +r+ +  
  KOO24406.1 122 MKKIFAQFDADGDGKLDIYQIARAFRALGLPKRDGTKMEMDKEMFKSFDTNGDgyvsmeefdKNLKPKTRRKIENILEAGWTFDKAAWEASvARHKKYD 220
                 5666788*********************8887777777777777777777664444555555778999********************97648999999 PP

    Caleosin  95 feeifskyakekkdaltlkevlellk 120
                 + +if++++++ +++l + e+ + ++
  KOO24406.1 221 MKQIFAQFDADGDGKLDIYEIARAFR 246
                 ********************998876 PP

  == domain 4  score: -0.3 bits;  conditional E-value: 1.1
    Caleosin  12 FfDrdkdGiiypld 25 
                  fD+d dG++   +
  KOO24406.1 267 SFDTDGDGYVSMEE 280
                 48888888887655 PP

  == domain 5  score: 6.5 bits;  conditional E-value: 0.009
    Caleosin  89 rfvpqkfeeifskyakekkdaltlkevlellk 120
                 r+ + ++ +if+ ++++ +++lt++e+++ ++
  KOO24406.1 314 RHKKYNMADIFKGFDTDGDGKLTMREFQRAFR 345
                 55556666666666666666666666665544 PP

  == domain 6  score: 1.6 bits;  conditional E-value: 0.29
    Caleosin  13 fDrdkdGiiypldt 26 
                 fD+d dG+i +++ 
  KOO24406.1 367 FDTDGDGYISLVEF 380
                 999****9999885 PP

>> Ad_Cy_reg  Adenylate cyclase regulatory domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.1   0.0      0.18   1.4e+02      70      92 ..      38      60 ..      31      87 .. 0.76
   2 ?    3.1   0.0     0.092        72      70      88 ..     137     155 ..     132     173 .. 0.80
   3 ?    4.9   0.0     0.025        20      70      90 ..     236     256 ..     230     280 .. 0.78
   4 !    6.3   0.0    0.0093       7.2      71      89 ..     336     354 ..     331     372 .. 0.77

  Alignments for each domain:
  == domain 1  score: 2.1 bits;  conditional E-value: 0.18
   Ad_Cy_reg 70 idlellqrlqrAvGLprvddpDa 92
                +d+  l r +rA+GL + +  D 
  KOO24406.1 38 LDIYELARAFRAIGLEKRQGGDS 60
                5777899*******998665554 PP

  == domain 2  score: 3.1 bits;  conditional E-value: 0.092
   Ad_Cy_reg  70 idlellqrlqrAvGLprvd 88 
                 +d+  + r +rA+GLp+ d
  KOO24406.1 137 LDIYQIARAFRALGLPKRD 155
                 5777899*********965 PP

  == domain 3  score: 4.9 bits;  conditional E-value: 0.025
   Ad_Cy_reg  70 idlellqrlqrAvGLprvddp 90 
                 +d+  + r +rA+GLp+ d +
  KOO24406.1 236 LDIYEIARAFRAMGLPKRDGE 256
                 5777899*********97654 PP

  == domain 4  score: 6.3 bits;  conditional E-value: 0.0093
   Ad_Cy_reg  71 dlellqrlqrAvGLprvdd 89 
                 ++  +qr +rA+GLp+ d 
  KOO24406.1 336 TMREFQRAFRAMGLPKRDG 354
                 67889**********9764 PP

>> DUF2744  Protein of unknown function (DUF2744)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.2   0.0      0.21   1.7e+02      85     116 ..      72     103 ..      54     105 .. 0.83
   2 ?    5.9   0.0     0.015        12      73     116 ..     159     202 ..     145     204 .. 0.84
   3 ?    5.1   0.0     0.028        22      66     116 ..     251     301 ..     243     303 .. 0.90
   4 ?    1.8   0.0      0.29   2.3e+02      68     116 ..     352     400 ..     341     402 .. 0.85

  Alignments for each domain:
  == domain 1  score: 2.2 bits;  conditional E-value: 0.21
     DUF2744  85 ePdrekvrladivklldqeeralvakalrdGl 116
                 +     v++++i + ++++ ra+++k   +G+
  KOO24406.1  72 TDKDGYVDMKEIDANMNDKLRAKIEKKIEMGW 103
                 555567999**********************9 PP

  == domain 2  score: 5.9 bits;  conditional E-value: 0.015
     DUF2744  73 alnaagsWvsiDePdrekvrladivklldqeeralvakalrdGl 116
                   +    + s D+     v ++++ k l++++r++++++l  G+
  KOO24406.1 159 MEMDKEMFKSFDTNGDGYVSMEEFDKNLKPKTRRKIENILEAGW 202
                 556666778899999999************************99 PP

  == domain 3  score: 5.1 bits;  conditional E-value: 0.028
     DUF2744  66 PergersalnaagsWvsiDePdrekvrladivklldqeeralvakalrdGl 116
                 P+r  ++  +  + + s D+     v ++++ + l++++r++++ al  G+
  KOO24406.1 251 PKRDGEKMEMDKAMFKSFDTDGDGYVSMEELDANLKPKTRRKIELALEAGW 301
                 6666667778899999*******************************9998 PP

  == domain 4  score: 1.8 bits;  conditional E-value: 0.29
     DUF2744  68 rgersalnaagsWvsiDePdrekvrladivklldqeeralvakalrdGl 116
                 r   +  +  + + s D+     + l ++++ +++++r++++  l  G+
  KOO24406.1 352 RDGTKMEVDKAMFDSFDTDGDGYISLVEFQENIQPKTRRKIELKLESGW 400
                 555556677788899999999999******************9999998 PP

>> VCBS  Repeat domain in Vibrio, Colwellia, Bradyrhizobium and Shewanella
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.7   0.0    0.0016       1.2      46      60 ..      27      41 ..      10      41 .. 0.79
   2 !    8.5   1.8    0.0039       3.1      46      60 ..     126     140 ..      72     141 .. 0.78
   3 ?   -0.9   0.0       3.3   2.6e+03      50      56 ..     170     176 ..     164     177 .. 0.70
   4 !    9.9   0.1    0.0014       1.1      46      60 ..     225     239 ..     199     239 .. 0.74
   5 ?   -0.5   0.1       2.4   1.9e+03      49      56 ..     268     275 ..     260     277 .. 0.78
   6 ?    1.5   0.1      0.61   4.7e+02      47      57 ..     325     335 ..     294     337 .. 0.68
   7 ?    0.3   0.1       1.4   1.1e+03      48      56 ..     366     374 ..     343     378 .. 0.80

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 0.0016
        VCBS 46 vavgDlDgDGdlDll 60
                 a +D DgDG+lD++
  KOO24406.1 27 FAQFDADGDGKLDIY 41
                4678*********97 PP

  == domain 2  score: 8.5 bits;  conditional E-value: 0.0039
        VCBS  46 vavgDlDgDGdlDll 60 
                  a +D DgDG+lD++
  KOO24406.1 126 FAQFDADGDGKLDIY 140
                 5678*********97 PP

  == domain 3  score: -0.9 bits;  conditional E-value: 3.3
        VCBS  50 DlDgDGd 56 
                 D +gDG+
  KOO24406.1 170 DTNGDGY 176
                 6666665 PP

  == domain 4  score: 9.9 bits;  conditional E-value: 0.0014
        VCBS  46 vavgDlDgDGdlDll 60 
                  a +D DgDG+lD++
  KOO24406.1 225 FAQFDADGDGKLDIY 239
                 5678*********97 PP

  == domain 5  score: -0.5 bits;  conditional E-value: 2.4
        VCBS  49 gDlDgDGd 56 
                 +D DgDG+
  KOO24406.1 268 FDTDGDGY 275
                 57778876 PP

  == domain 6  score: 1.5 bits;  conditional E-value: 0.61
        VCBS  47 avgDlDgDGdl 57 
                   +D DgDG+l
  KOO24406.1 325 KGFDTDGDGKL 335
                 46799999986 PP

  == domain 7  score: 0.3 bits;  conditional E-value: 1.4
        VCBS  48 vgDlDgDGd 56 
                  +D DgDG+
  KOO24406.1 366 SFDTDGDGY 374
                 568888886 PP

>> Dockerin_1  Dockerin type I domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.3   0.0      0.25   1.9e+02      27      50 ..      20      43 ..       4      50 .. 0.71
   2 !    7.3   0.1    0.0069       5.4       2      47 ..     129     179 ..     128     183 .. 0.77
   3 ?    1.0   0.1      0.64     5e+02      35      47 ..     226     238 ..     214     244 .. 0.78
   4 ?    4.7   0.3     0.044        34       2      47 ..     228     278 ..     227     285 .. 0.75
   5 ?    2.1   0.0      0.29   2.3e+02      37      51 ..     327     341 ..     318     347 .. 0.85
   6 ?    3.2   0.2      0.13     1e+02       3      46 ..     328     376 ..     326     382 .. 0.59

  Alignments for each domain:
  == domain 1  score: 2.3 bits;  conditional E-value: 0.25
                BTTSCCCHGGGSTT-SSCESHHHH CS
  Dockerin_1 27 gqssssngkaaDvNgDGrvnalDa 50
                + s +   + +D +gDG+ +   +
  KOO24406.1 20 KYSMPALFAQFDADGDGKLDIYEL 43
                55666667789******9876655 PP

  == domain 2  score: 7.3 bits;  conditional E-value: 0.0069
                 TETTSSSC-SHHHHHHHHHHCT.....SSEBTTSCCCHGGGSTT-SSCESH CS
  Dockerin_1   2 gDVNgDgkVnalDalliinyln.....qregqssssngkaaDvNgDGrvna 47 
                 +D +gDgk +   +++  ++l       ++ + ++++ k +D NgDG v++
  KOO24406.1 129 FDADGDGKLDIYQIARAFRALGlpkrdGTKMEMDKEMFKSFDTNGDGYVSM 179
                 57888888777777777777778877766777888889999******9986 PP

  == domain 3  score: 1.0 bits;  conditional E-value: 0.64
                 GGGSTT-SSCESH CS
  Dockerin_1  35 kaaDvNgDGrvna 47 
                 + +D +gDG+ + 
  KOO24406.1 226 AQFDADGDGKLDI 238
                 5689999999775 PP

  == domain 4  score: 4.7 bits;  conditional E-value: 0.044
                 TETTSSSC-SHHHHHHHHHHCT.....SSEBTTSCCCHGGGSTT-SSCESH CS
  Dockerin_1   2 gDVNgDgkVnalDalliinyln.....qregqssssngkaaDvNgDGrvna 47 
                 +D +gDgk +   +++  +++       ++ + ++ + k +D +gDG v++
  KOO24406.1 228 FDADGDGKLDIYEIARAFRAMGlpkrdGEKMEMDKAMFKSFDTDGDGYVSM 278
                 588888887777777777777788776666677778888999999999986 PP

  == domain 5  score: 2.1 bits;  conditional E-value: 0.29
                 GSTT-SSCESHHHHH CS
  Dockerin_1  37 aDvNgDGrvnalDal 51 
                 +D +gDG+ +++ ++
  KOO24406.1 327 FDTDGDGKLTMREFQ 341
                 7999***99998775 PP

  == domain 6  score: 3.2 bits;  conditional E-value: 0.13
                 ETTSSSC-SHHHHHHHHHHCT.....SSEBTTSCCCHGGGSTT-SSCES CS
  Dockerin_1   3 DVNgDgkVnalDalliinyln.....qregqssssngkaaDvNgDGrvn 46 
                 D +gDgk +   + +  +++       ++ + ++ + + +D +gDG ++
  KOO24406.1 328 DTDGDGKLTMREFQRAFRAMGlpkrdGTKMEVDKAMFDSFDTDGDGYIS 376
                 6666666666666666666666654444444555555566677777665 PP

>> PCP  Peridinin-chlorophyll A binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.8   0.2    0.0049       3.8      27      68 ..      78     119 ..      60     142 .. 0.80
   2 ?    6.2   0.1     0.016        12      17      68 ..     165     218 ..     160     242 .. 0.81
   3 ?    1.1   0.0      0.56   4.4e+02      17      68 ..     264     317 ..     258     331 .. 0.84

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 0.0049
                 HHHHHHHHH-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHH CS
         PCP  27 vylkdlpaknpkkalkaidkmlevgaamdpnllkaaveAHhk 68 
                 v +k++ a+  +k    i+k +e+g + d++   a+v+ H+k
  KOO24406.1  78 VDMKEIDANMNDKLRAKIEKKIEMGWEFDKEKWDASVKRHKK 119
                 34677777778888888**********************987 PP

  == domain 2  score: 6.2 bits;  conditional E-value: 0.016
                 HHTTS-TTSSHHH..HHHHHH-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHH CS
         PCP  17 flkeidwlsdvyl..kdlpaknpkkalkaidkmlevgaamdpnllkaaveAHhk 68 
                 + k +d + d y+  ++  ++   k+ + i+ +le g + d+++ +a+v+ H+k
  KOO24406.1 165 MFKSFDTNGDGYVsmEEFDKNLKPKTRRKIENILEAGWTFDKAAWEASVARHKK 218
                 56888999996651155556666788999********************99987 PP

  == domain 3  score: 1.1 bits;  conditional E-value: 0.56
                 HHTTS-TTSS..HHHHHHHHH-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHH CS
         PCP  17 flkeidwlsd..vylkdlpaknpkkalkaidkmlevgaamdpnllkaaveAHhk 68 
                 + k +d   d  v +++l a+   k+ + i+  le g + d+    a+v+ H+k
  KOO24406.1 264 MFKSFDTDGDgyVSMEELDANLKPKTRRKIELALEAGWKFDKPTWDASVARHKK 317
                 67888888884444678999999999999*************999999999987 PP

>> PI-PLC-Y  Phosphatidylinositol-specific phospholipase C, Y domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.0       7.3   5.7e+03      95     110 ..      61      78 ..      56      81 .. 0.73
   2 ?    1.4   0.0      0.51     4e+02      91     111 ..     156     178 ..     146     182 .. 0.82
   3 ?    6.1   0.0     0.018        14      91     111 ..     255     277 ..     247     281 .. 0.85
   4 ?    3.5   0.0      0.11        86      91     110 ..     354     375 ..     349     379 .. 0.85

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 7.3
    PI-PLC-Y  95 qlnealFa..engscGYv 110
                 ++ +a F+   ++++GYv
  KOO24406.1  61 DMDKATFKsfGTDKDGYV 78 
                 677899994445569999 PP

  == domain 2  score: 1.4 bits;  conditional E-value: 0.51
    PI-PLC-Y  91 degmqlnealFa..engscGYvl 111
                 +++m++ + +F+  +++++GYv 
  KOO24406.1 156 GTKMEMDKEMFKsfDTNGDGYVS 178
                 6799********77677799*96 PP

  == domain 3  score: 6.1 bits;  conditional E-value: 0.018
    PI-PLC-Y  91 degmqlnealFa..engscGYvl 111
                 +e+m++ +a+F+  +++++GYv 
  KOO24406.1 255 GEKMEMDKAMFKsfDTDGDGYVS 277
                 689*********7778889**95 PP

  == domain 4  score: 3.5 bits;  conditional E-value: 0.11
    PI-PLC-Y  91 degmqlnealFa..engscGYv 110
                 +++m++ +a+F+  +++++GY+
  KOO24406.1 354 GTKMEVDKAMFDsfDTDGDGYI 375
                 689*********7778889998 PP

>> MukF_M  MukF middle domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.5   0.1      0.29   2.3e+02      27      53 ..     105     131 ..      85     138 .. 0.82
   2 ?    3.6   0.0     0.063        49      27      53 ..     204     230 ..     189     234 .. 0.84
   3 ?    4.5   0.0     0.033        25      27      54 ..     303     330 ..     287     347 .. 0.75

  Alignments for each domain:
  == domain 1  score: 1.5 bits;  conditional E-value: 0.29
                 -SHHHHHHHTHHHHHHTHHHHHHHHHH CS
      MukF_M  27 gdekaWrknvfarlkysvaeildridl 53 
                  d+++W++ v  + k+ +++i+++ d 
  KOO24406.1 105 FDKEKWDASVKRHKKWDMKKIFAQFDA 131
                 57899******************9986 PP

  == domain 2  score: 3.6 bits;  conditional E-value: 0.063
                 -SHHHHHHHTHHHHHHTHHHHHHHHHH CS
      MukF_M  27 gdekaWrknvfarlkysvaeildridl 53 
                  d++aW++ v  + ky +++i+++ d 
  KOO24406.1 204 FDKAAWEASVARHKKYDMKQIFAQFDA 230
                 58899******************9986 PP

  == domain 3  score: 4.5 bits;  conditional E-value: 0.033
                 -SHHHHHHHTHHHHHHTHHHHHHHHHHH CS
      MukF_M  27 gdekaWrknvfarlkysvaeildridlt 54 
                  d+ +W++ v  + ky +a+i++  d  
  KOO24406.1 303 FDKPTWDASVARHKKYNMADIFKGFDTD 330
                 47889*****************998864 PP

>> Lipoprotein_10  Putative mycoplasma lipoprotein, C-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.6   0.1     0.027        21      89     123 ..      65      99 ..      59     102 .. 0.92
   2 ?    2.6   0.0      0.23   1.8e+02      84     122 ..     159     197 ..     152     201 .. 0.84
   3 ?    1.6   0.0      0.46   3.6e+02      89     124 ..     263     298 ..     252     300 .. 0.86

  Alignments for each domain:
  == domain 1  score: 5.6 bits;  conditional E-value: 0.027
  Lipoprotein_10  89 elfkevskdeekivsysdpadfrsgkfRdaiksaf 123
                     ++fk++ +d++ +v ++++     +k+R +i++++
      KOO24406.1  65 ATFKSFGTDKDGYVDMKEIDANMNDKLRAKIEKKI 99 
                     57*****************************9987 PP

  == domain 2  score: 2.6 bits;  conditional E-value: 0.23
  Lipoprotein_10  84 aekalelfkevskdeekivsysdpadfrsgkfRdaiksa 122
                     +e   e+fk+++++ + +vs+++  +    k R +i++ 
      KOO24406.1 159 MEMDKEMFKSFDTNGDGYVSMEEFDKNLKPKTRRKIENI 197
                     5566789****************9999999999999865 PP

  == domain 3  score: 1.6 bits;  conditional E-value: 0.46
  Lipoprotein_10  89 elfkevskdeekivsysdpadfrsgkfRdaiksafk 124
                     ++fk++++d + +vs+++       k R +i+ a++
      KOO24406.1 263 AMFKSFDTDGDGYVSMEELDANLKPKTRRKIELALE 298
                     68*****************99999999999987765 PP

>> Barwin  Barwin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.0       5.1     4e+03      92     105 ..      24      37 ..      18      39 .. 0.84
   2 ?   -2.3   0.1       4.8   3.7e+03      86     106 ..      58      78 ..      45      86 .. 0.75
   3 ?   -2.3   0.0         5   3.9e+03      92     105 ..     123     136 ..     117     142 .. 0.81
   4 ?    4.2   0.0     0.047        37      87     105 ..     158     176 ..     141     182 .. 0.83
   5 ?   -2.4   0.0       5.2     4e+03      92     105 ..     222     235 ..     218     240 .. 0.81
   6 ?    5.4   0.0     0.021        16      87     106 ..     257     276 ..     240     286 .. 0.82
   7 ?    5.0   0.1     0.027        21      87     105 ..     356     374 ..     305     382 .. 0.83

  Alignments for each domain:
  == domain 1  score: -2.3 bits;  conditional E-value: 5.1
      Barwin  92 valfnkldtdGvGy 105
                 +alf ++d+dG G 
  KOO24406.1  24 PALFAQFDADGDGK 37 
                 579*******9885 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 4.8
      Barwin  86 gGldldvalfnkldtdGvGyq 106
                 g  d+d+a f+ + td  Gy 
  KOO24406.1  58 GDSDMDKATFKSFGTDKDGYV 78 
                 446899999999999877775 PP

  == domain 3  score: -2.3 bits;  conditional E-value: 5
      Barwin  92 valfnkldtdGvGy 105
                 + +f ++d+dG G 
  KOO24406.1 123 KKIFAQFDADGDGK 136
                 46899999999885 PP

  == domain 4  score: 4.2 bits;  conditional E-value: 0.047
      Barwin  87 GldldvalfnkldtdGvGy 105
                  +++d+ +f+ +dt+G Gy
  KOO24406.1 158 KMEMDKEMFKSFDTNGDGY 176
                 5889************998 PP

  == domain 5  score: -2.4 bits;  conditional E-value: 5.2
      Barwin  92 valfnkldtdGvGy 105
                 + +f ++d+dG G 
  KOO24406.1 222 KQIFAQFDADGDGK 235
                 57999****99885 PP

  == domain 6  score: 5.4 bits;  conditional E-value: 0.021
      Barwin  87 GldldvalfnkldtdGvGyq 106
                  +++d+a+f+ +dtdG Gy 
  KOO24406.1 257 KMEMDKAMFKSFDTDGDGYV 276
                 5899************9985 PP

  == domain 7  score: 5.0 bits;  conditional E-value: 0.027
      Barwin  87 GldldvalfnkldtdGvGy 105
                  +++d+a+f+ +dtdG Gy
  KOO24406.1 356 KMEVDKAMFDSFDTDGDGY 374
                 5899************998 PP

>> Phage_lysozyme  Phage lysozyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.1   0.2     0.019        14       8      48 ..      78     122 ..      71     131 .. 0.82
   2 ?    3.1   0.0      0.16   1.3e+02      25      50 ..     199     223 ..     169     230 .. 0.74
   3 ?   -0.2   0.0       1.7   1.3e+03      25      48 ..     298     320 ..     269     339 .. 0.82

  Alignments for each domain:
  == domain 1  score: 6.1 bits;  conditional E-value: 0.019
                     BCSSSCCTTHH.....-EHHHHHHHHHHHHHHHHHHHHHHTTSHHS CS
  Phage_lysozyme   8 ekgkdvsphkr.....itkeeaagryekdlktaerkikqyikvkdf 48 
                     ++ k ++ +++     +  ++++  +e+d +++++ +k++ k  d+
      KOO24406.1  78 VDMKEIDANMNdklraKIEKKIEMGWEFDKEKWDASVKRHKKW-DM 122
                     566777777778888888899*******************996.55 PP

  == domain 2  score: 3.1 bits;  conditional E-value: 0.16
                     HHHHHHHHHHHHHHHHHHTTSHHSSH CS
  Phage_lysozyme  25 agryekdlktaerkikqyikvkdfep 50 
                     ++ + +d +++e+ ++++ k +d+ +
      KOO24406.1 199 EAGWTFDKAAWEASVARHKK-YDMKQ 223
                     67799*************99.79987 PP

  == domain 3  score: -0.2 bits;  conditional E-value: 1.7
                     HHHHHHHHHHHHHHHHHHTTSHHS CS
  Phage_lysozyme  25 agryekdlktaerkikqyikvkdf 48 
                     ++ +++d  t+++ ++++ k +++
      KOO24406.1 298 EAGWKFDKPTWDASVARHKK-YNM 320
                     56699999999999999988.566 PP

>> Toprim_2  Toprim-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.5   0.1         1   8.1e+02      47      73 ..      26      52 ..      12      66 .. 0.79
   2 ?    3.2   0.1      0.15   1.2e+02      43      72 ..     121     150 ..      99     172 .. 0.75
   3 ?   -2.1   0.0       7.1   5.5e+03      45      78 ..     163     195 ..     149     205 .. 0.72
   4 ?    5.7   0.1     0.026        20      37      72 ..     214     249 ..     200     262 .. 0.79
   5 ?    0.6   0.0         1   7.9e+02      45      77 ..     262     293 ..     243     309 .. 0.76
   6 ?    2.0   0.1      0.37   2.9e+02      40      72 ..     316     348 ..     306     372 .. 0.80

  Alignments for each domain:
  == domain 1  score: 0.5 bits;  conditional E-value: 1
    Toprim_2 47 vvlalDnDkaGrkaakrlaellreagv 73
                ++  +D+D  G+  + +la+ +r  g+
  KOO24406.1 26 LFAQFDADGDGKLDIYELARAFRAIGL 52
                6778********999999999987774 PP

  == domain 2  score: 3.2 bits;  conditional E-value: 0.15
    Toprim_2  43 pekkvvlalDnDkaGrkaakrlaellreag 72 
                 + kk++  +D+D  G+  + ++a+ +r  g
  KOO24406.1 121 DMKKIFAQFDADGDGKLDIYQIARAFRALG 150
                 44789999*******999888888877655 PP

  == domain 3  score: -2.1 bits;  conditional E-value: 7.1
    Toprim_2  45 kkvvlalDnDkaGrkaakrlaellreagvrekir 78 
                 k+++  +D +  G   ++++ + l+ ++ r+ki 
  KOO24406.1 163 KEMFKSFDTNGDGYVSMEEFDKNLKPKT-RRKIE 195
                 5566778888888888888888885444.55555 PP

  == domain 4  score: 5.7 bits;  conditional E-value: 0.026
    Toprim_2  37 kllerypekkvvlalDnDkaGrkaakrlaellreag 72 
                    ++y+ k+++  +D+D  G+  + ++a+ +r  g
  KOO24406.1 214 ARHKKYDMKQIFAQFDADGDGKLDIYEIARAFRAMG 249
                 4456776799************99999998887666 PP

  == domain 5  score: 0.6 bits;  conditional E-value: 1
    Toprim_2  45 kkvvlalDnDkaGrkaakrlaellreagvreki 77 
                 k ++  +D D  G   +++l + l+ ++ r+ki
  KOO24406.1 262 KAMFKSFDTDGDGYVSMEELDANLKPKT-RRKI 293
                 5566779*************99997555.4443 PP

  == domain 6  score: 2.0 bits;  conditional E-value: 0.37
    Toprim_2  40 erypekkvvlalDnDkaGrkaakrlaellreag 72 
                 ++y+ + ++  +D D  G+  ++++++ +r  g
  KOO24406.1 316 KKYNMADIFKGFDTDGDGKLTMREFQRAFRAMG 348
                 45544668888***************9998777 PP

>> Cleaved_Adhesin  Cleaved Adhesin Domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.8   0.0     0.062        49      12      27 ..      22      37 ..      15      86 .. 0.85
   2 ?    0.1   0.0      0.84   6.6e+02      16      27 ..     125     136 ..     117     158 .. 0.83
   3 ?    0.1   0.0      0.85   6.6e+02      15      27 ..     223     235 ..     215     247 .. 0.82
   4 ?   -0.7   0.0       1.6   1.2e+03      15      31 ..     263     279 ..     256     291 .. 0.78
   5 ?   -2.5   0.0       5.3   4.1e+03      15      27 ..     322     334 ..     316     343 .. 0.78
   6 ?   -2.6   0.0       5.9   4.6e+03      18      27 ..     365     374 ..     360     385 .. 0.69

  Alignments for each domain:
  == domain 1  score: 3.8 bits;  conditional E-value: 0.062
  Cleaved_Adhesin 12 evPaeWttiDaDgDGa 27
                     ++Pa + + DaDgDG+
       KOO24406.1 22 SMPALFAQFDADGDGK 37
                     589************7 PP

  == domain 2  score: 0.1 bits;  conditional E-value: 0.84
  Cleaved_Adhesin  16 eWttiDaDgDGa 27 
                      ++ + DaDgDG+
       KOO24406.1 125 IFAQFDADGDGK 136
                      67789******7 PP

  == domain 3  score: 0.1 bits;  conditional E-value: 0.85
  Cleaved_Adhesin  15 aeWttiDaDgDGa 27 
                      +++ + DaDgDG+
       KOO24406.1 223 QIFAQFDADGDGK 235
                      567889******7 PP

  == domain 4  score: -0.7 bits;  conditional E-value: 1.6
  Cleaved_Adhesin  15 aeWttiDaDgDGanWls 31 
                      a ++  D DgDG+  + 
       KOO24406.1 263 AMFKSFDTDGDGYVSME 279
                      567899******97665 PP

  == domain 5  score: -2.5 bits;  conditional E-value: 5.3
  Cleaved_Adhesin  15 aeWttiDaDgDGa 27 
                       +++  D DgDG+
       KOO24406.1 322 DIFKGFDTDGDGK 334
                      56778899***97 PP

  == domain 6  score: -2.6 bits;  conditional E-value: 5.9
  Cleaved_Adhesin  18 ttiDaDgDGa 27 
                         D DgDG+
       KOO24406.1 365 DSFDTDGDGY 374
                      5567888876 PP

>> DUF5640  Family of unknown function (DUF5640)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.0   0.0      0.14   1.1e+02      19      37 ..      29      47 ..      12      48 .. 0.79
   2 ?    3.8   0.0     0.073        57      14      37 ..     123     146 ..     108     147 .. 0.73
   3 ?   -1.8   0.2       4.1   3.2e+03      13      31 ..     162     180 ..     156     185 .. 0.73
   4 ?    4.1   0.0      0.06        47      11      37 ..     218     245 ..     209     246 .. 0.75
   5 ?    0.2   0.0      0.97   7.6e+02      15      33 ..     263     281 ..     256     294 .. 0.77
   6 ?   -0.4   0.1       1.5   1.2e+03      19      34 ..     326     341 ..     307     345 .. 0.65
   7 ?   -0.2   0.0       1.3     1e+03      19      31 ..     366     378 ..     355     384 .. 0.78

  Alignments for each domain:
  == domain 1  score: 3.0 bits;  conditional E-value: 0.14
                EE-SSS-EEEEEEETTEEE CS
     DUF5640 19 kFdedGtgelelskaaykf 37
                +Fd+dG g+l +++ a +f
  KOO24406.1 29 QFDADGDGKLDIYELARAF 47
                7*********999988776 PP

  == domain 2  score: 3.8 bits;  conditional E-value: 0.073
                 S-EEEEE-SSS-EEEEEEETTEEE CS
     DUF5640  14 shktYkFdedGtgelelskaaykf 37 
                 +++  +Fd+dG g+l +++ a +f
  KOO24406.1 123 KKIFAQFDADGDGKLDIYQIARAF 146
                 344458*********999887666 PP

  == domain 3  score: -1.8 bits;  conditional E-value: 4.1
                 SS-EEEEE-SSS-EEEEEE CS
     DUF5640  13 dshktYkFdedGtgelels 31 
                 d+++  +Fd +G g++ ++
  KOO24406.1 162 DKEMFKSFDTNGDGYVSME 180
                 5666668999999988765 PP

  == domain 4  score: 4.1 bits;  conditional E-value: 0.06
                 SSSS-EEE.EE-SSS-EEEEEEETTEEE CS
     DUF5640  11 tedshktY.kFdedGtgelelskaaykf 37 
                  +d+++ + +Fd+dG g+l +++ a +f
  KOO24406.1 218 KYDMKQIFaQFDADGDGKLDIYEIARAF 245
                 5565444438*********999988666 PP

  == domain 5  score: 0.2 bits;  conditional E-value: 0.97
                 -EEEEE-SSS-EEEEEEET CS
     DUF5640  15 hktYkFdedGtgelelska 33 
                  +  +Fd dG g++ +++ 
  KOO24406.1 263 AMFKSFDTDGDGYVSMEEL 281
                 5555899999999877665 PP

  == domain 6  score: -0.4 bits;  conditional E-value: 1.5
                 EE-SSS-EEEEEEETT CS
     DUF5640  19 kFdedGtgelelskaa 34 
                  Fd dG g+l + + +
  KOO24406.1 326 GFDTDGDGKLTMREFQ 341
                 3999999988877655 PP

  == domain 7  score: -0.2 bits;  conditional E-value: 1.3
                 EE-SSS-EEEEEE CS
     DUF5640  19 kFdedGtgelels 31 
                 +Fd dG g++ l 
  KOO24406.1 366 SFDTDGDGYISLV 378
                 8*******99875 PP

>> EF-hand_4  Cytoskeletal-regulatory complex EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.5   0.0      0.18   1.4e+02      50      72 ..      28      50 ..      16      52 .. 0.83
   2 ?    3.4   0.0     0.096        75      43      67 ..     120     144 ..     111     150 .. 0.80
   3 ?    5.7   0.0     0.018        14      39      70 ..     215     246 ..     198     249 .. 0.81
   4 ?    3.8   0.0     0.068        53      41      70 ..     316     345 ..     309     350 .. 0.83
   5 ?   -3.0   0.1       9.4   7.3e+03      47      65 ..     362     380 ..     351     382 .. 0.78

  Alignments for each domain:
  == domain 1  score: 2.5 bits;  conditional E-value: 0.18
   EF-hand_4 50 dladidedgkldfeefciamrli 72
                   d d dgkld  e++ a r i
  KOO24406.1 28 AQFDADGDGKLDIYELARAFRAI 50
                55699**********99888765 PP

  == domain 2  score: 3.4 bits;  conditional E-value: 0.096
   EF-hand_4  43 dklekiwdladidedgkldfeefci 67 
                   ++ki+   d d dgkld  + + 
  KOO24406.1 120 WDMKKIFAQFDADGDGKLDIYQIAR 144
                 468899999**********877665 PP

  == domain 3  score: 5.7 bits;  conditional E-value: 0.018
   EF-hand_4  39 kleedklekiwdladidedgkldfeefciamr 70 
                 + ++  +++i+   d d dgkld  e + a r
  KOO24406.1 215 RHKKYDMKQIFAQFDADGDGKLDIYEIARAFR 246
                 556677899***************99887766 PP

  == domain 4  score: 3.8 bits;  conditional E-value: 0.068
   EF-hand_4  41 eedklekiwdladidedgkldfeefciamr 70 
                 ++ +++ i++  d d dgkl + ef  a r
  KOO24406.1 316 KKYNMADIFKGFDTDGDGKLTMREFQRAFR 345
                 556788999999*************87766 PP

  == domain 5  score: -3.0 bits;  conditional E-value: 9.4
   EF-hand_4  47 kiwdladidedgkldfeef 65 
                  ++d  d d dg + + ef
  KOO24406.1 362 AMFDSFDTDGDGYISLVEF 380
                 5677789999999988887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (422 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       665  (0.0370907); expected 358.6 (0.02)
Passed bias filter:                      438  (0.0244297); expected 358.6 (0.02)
Passed Vit filter:                        48  (0.00267723); expected 17.9 (0.001)
Passed Fwd filter:                        26  (0.00145016); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              23  [number of targets reported over threshold]
# CPU time: 0.61u 0.29s 00:00:00.89 Elapsed: 00:00:00.45
# Mc/sec: 2808.13
//
Query:       KOO24407.1  [L=383]
Description: hypothetical protein Ctob_004362, partial [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (383 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       269  (0.0150036); expected 358.6 (0.02)
Passed bias filter:                      189  (0.0105416); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.47u 0.23s 00:00:00.70 Elapsed: 00:00:00.41
# Mc/sec: 2781.77
//
Query:       KOO24408.1  [L=550]
Description: hypothetical protein Ctob_004361 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.068   12.6   0.0       0.27   10.6   0.0    1.8  2  Fringe    Fringe-like


Domain annotation for each model (and alignments):
>> Fringe  Fringe-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.0     0.061   1.1e+03      23      51 ..     188     217 ..     176     245 .. 0.62
   2 ?   10.6   0.0   1.5e-05      0.27     145     210 ..     385     453 ..     365     488 .. 0.84

  Alignments for each domain:
  == domain 1  score: -1.2 bits;  conditional E-value: 0.061
      Fringe  23 lelllkTwisrakeqtf.iftdvedeelrk 51 
                 l+   +Tw + ++   + + td++d +  +
  KOO24408.1 188 LQAAADTWLQMTRGADLvLMTDGDDPRDAA 217
                 567789****99977651579999865333 PP

  == domain 2  score: 10.6 bits;  conditional E-value: 1.5e-05
      Fringe 145 wfatGGaGfclsralalklaP..wasggrfvstsekirl.pdDctlGfiieelLgvslthsslfHshle 210
                   a GGaG  lsr+  ++l+    a+   f    ++     +D+t++f ++++ gvs++++  + +h +
  KOO24408.1 385 CHAAGGAGYGLSRSALAHLQTfvAAEYPAFLARVDRFTYgGEDVTIAFALKKQAGVSVLNIGCLYQHGP 453
                 4679**********9999987555667788888887765369**********************99976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (550 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       363  (0.0202465); expected 358.6 (0.02)
Passed bias filter:                      244  (0.0136092); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.50u 0.26s 00:00:00.76 Elapsed: 00:00:00.44
# Mc/sec: 3789.68
//
Query:       KOO24409.1  [L=396]
Description: hypothetical protein Ctob_004360 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (396 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       468  (0.026103); expected 358.6 (0.02)
Passed bias filter:                      376  (0.0209716); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.44u 0.25s 00:00:00.69 Elapsed: 00:00:00.39
# Mc/sec: 3064.96
//
Query:       KOO24410.1  [L=604]
Description: folate-biopterin transporter family [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.3e-10   38.8  12.7    2.9e-07   29.1   1.0    3.1  3  BT1       BT1 family


Domain annotation for each model (and alignments):
>> BT1  BT1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.1   1.0   1.6e-11   2.9e-07      12      77 ..     102     167 ..      92     176 .. 0.85
   2 !   15.7   0.1   1.9e-07    0.0034      90     149 ..     204     264 ..     194     289 .. 0.85
   3 !    0.3   1.5    0.0087   1.6e+02     363     469 ..     383     484 ..     349     536 .. 0.71

  Alignments for each domain:
  == domain 1  score: 29.1 bits;  conditional E-value: 1.6e-11
         BT1  12 vqfmltdrlgidparyqrlsglatlgwvikpltallsDgfallGytkrwYlvvscllgaafallyg 77 
                 ++ +l   l+     y+  ++l +l+w+ k +++ + D ++++Gy++++Y+v++  + aa+ +++ 
  KOO24410.1 102 TYGFLLGYLNTPSYVYSTCTTLLALPWSFKFILGAINDCVPIMGYRRKPYMVIGWTICAAMLVVLY 167
                 566777777777789999***********************************9888877776654 PP

  == domain 2  score: 15.7 bits;  conditional E-value: 1.9e-07
         BT1  90 aafillsslgkaivdvlsdalvselarq.spkagpsLvSwiwlvsavGgiiasvlsGpLld 149
                 +++++++s+g  i+dv++d+l +++ar   ++  +  +S ++l+ a+G + as++ G+ ++
  KOO24410.1 204 TILMIFASFGYVIADVAADGLTVQYARAePESRRGYTQSTAYLTRALGQVFASLIVGFGMN 264
                 68999***********************55567899*********************8665 PP

  == domain 3  score: 0.3 bits;  conditional E-value: 0.0087
         BT1 363 rllkklsyrlvfivtt.vlqvlaglfdlilvkrwnlklGisdhavyilgdsvvlevlymlkfmPlvvllsrLcPrGsEsvvfallasianlgqvvsssl 460
                   + ++s rl++i+tt  l+v+ + f+++ v  +     + ++  + lg++++ e+ +   f+    ++  ++ +  E+ ++ ll  ++n g+++ ++ 
  KOO24410.1 383 ERFLHISWRLMLILTTaSLNVIDVPFSMLTVFDV-----VRNQ-YFYLGETLLTELPAAAFFVVSCFVIVEMATADNEGLIYGLLTTVSNCGKSLPNAF 475
                 3344555555555444134444444555555444.....4455.8999999999999999999999999999999999********9999999988877 PP

         BT1 461 Gallmeygw 469
                    l  + +
  KOO24410.1 476 SNQLYGLFY 484
                 766666555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (604 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       543  (0.0302861); expected 358.6 (0.02)
Passed bias filter:                      270  (0.0150594); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.58u 0.24s 00:00:00.82 Elapsed: 00:00:00.43
# Mc/sec: 4200.40
//
Query:       KOO24411.1  [L=940]
Description: hypothetical protein Ctob_004357 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (940 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2039  (0.113726); expected 358.6 (0.02)
Passed bias filter:                      388  (0.0216409); expected 358.6 (0.02)
Passed Vit filter:                        63  (0.00351386); expected 17.9 (0.001)
Passed Fwd filter:                        18  (0.00100396); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 1.14u 0.33s 00:00:01.47 Elapsed: 00:00:00.51
# Mc/sec: 5580.86
//
Query:       KOO24412.1  [L=212]
Description: hypothetical protein Ctob_004355 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (212 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       661  (0.0368676); expected 358.6 (0.02)
Passed bias filter:                      565  (0.0315132); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.45u 0.25s 00:00:00.70 Elapsed: 00:00:00.42
# Mc/sec: 1527.76
//
Query:       KOO24413.1  [L=323]
Description: hypothetical protein Ctob_004358 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    3.4e-08   33.3   3.3     0.0025   17.4   0.3    2.6  2  Nodulin-like  Nodulin-like


Domain annotation for each model (and alignments):
>> Nodulin-like  Nodulin-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.2   3.7e-07    0.0067       5      44 ..      14      53 ..      12      76 .. 0.79
   2 !   17.4   0.3   1.4e-07    0.0025     129     174 ..      78     128 ..      74     133 .. 0.80

  Alignments for each domain:
  == domain 1  score: 15.9 bits;  conditional E-value: 3.7e-07
  Nodulin-like  5 lvaaiwiqsiaGanylFsaySsalKsslgisQkqlnlLav 44
                  l+a ++   +aG  y F++yS+alK+  ++sQ+ql ++  
    KOO24413.1 14 LFAGLYSGMTAGCFYGFGIYSPALKKHFALSQQQLMNINT 53
                  77777788899***********************987754 PP

  == domain 2  score: 17.4 bits;  conditional E-value: 1.4e-07
  Nodulin-like 129 rgvvvgllkgyaGlsaaiytqlyeailgs.....daksllllvalvplvvs 174
                    g v++++k+++G+s+ + t+l+  i g+      a + lll a + +++s
    KOO24413.1  78 IGDVASIVKSFVGVSGSVTTTLFVLIWGTpkgdqTALNALLLWASISAIIS 128
                   5789**********************9996664334456777777777765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (323 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       606  (0.0338); expected 358.6 (0.02)
Passed bias filter:                      333  (0.0185733); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.50u 0.23s 00:00:00.73 Elapsed: 00:00:00.42
# Mc/sec: 2321.55
//
Query:       KOO24414.1  [L=999]
Description: hypothetical protein Ctob_004359 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    8.2e-09   35.7   0.0    1.6e-08   34.8   0.0    1.4  1  C2        C2 domain


Domain annotation for each model (and alignments):
>> C2  C2 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.8   0.0   8.9e-13   1.6e-08       1      79 [.     307     394 ..     307     408 .. 0.83

  Alignments for each domain:
  == domain 1  score: 34.8 bits;  conditional E-value: 8.9e-13
                 TEEEEEEEEEESSSSSSTTSSCEEEEEEEE.....ECEEEEEE-SCSSSSSSEEEEEEEEEESC....HTTSEEEEEEEEECSSSTEE CS
          C2   1 gklevtvieAknLpnkdkkgssdpyvkvsl.....dgkqkakTrviknslnPvWnekftfevae....leeakLeveVfdndrlskdd 79 
                 g+l+v+ ++A +L++kd +g+sdpyv+ ++        + +++ v+++++ P W+e+++++ +       + kL + V+d+d  s  d
  KOO24414.1 307 GQLSVNLHSASGLKAKDMNGKSDPYVVFKFsifdqVILKEVRSGVKEKTVTPLWEESIVISERMseelMLSGKLSLIVMDKDFGSMRD 394
                 68*****************************985444566777799**************8777678878889999999999854444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (999 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       517  (0.028836); expected 358.6 (0.02)
Passed bias filter:                      369  (0.0205812); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.69u 0.26s 00:00:00.95 Elapsed: 00:00:00.43
# Mc/sec: 6979.79
//
Query:       KOO24415.1  [L=414]
Description: hypothetical protein Ctob_006062 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
   2.3e-114  381.7   0.2   2.8e-114  381.4   0.2    1.1  1  PSII_BNR        Photosynthesis system II assembly factor YCF4
    4.8e-08   31.8   6.7        1.9    8.8   0.1    4.9  4  BNR             BNR/Asp-box repeat
    0.00022   20.1   0.0       0.55    8.9   0.0    3.1  3  Sortilin-Vps10  Sortilin, neurotensin receptor 3,
     0.0027   17.0   0.1        1.9    7.6   0.0    3.4  3  DUF4185         Domain of unknown function (DUF4185)


Domain annotation for each model (and alignments):
>> PSII_BNR  Photosynthesis system II assembly factor YCF48
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  381.4   0.2  6.3e-118  2.8e-114       4     301 ..      78     410 ..      75     412 .. 0.95

  Alignments for each domain:
  == domain 1  score: 381.4 bits;  conditional E-value: 6.3e-118
                 -SS--EEEEE-S-SS....-EEEEEES..SSS-EEEEETTTEEEEESSTTSS-EE--...---S--.--EEEEEEEETTEEEEEEETTEEEEESSTTSS CS
    PSII_BNR   4 assspWevvelptes....tllDiaft..dekhGflvGtkatlletlDGGktWeers...ldleeevnyrlesvsfkgdegwivGkPslllhttdgGks 93 
                 a++ +Wevv+lp+ s    +l+Di+f+  ++k G++vG++ t+l t DGGktWe +s   ld +ee+nyr+++vsf + egwi+GkP++llht dgG s
  KOO24415.1  78 AEVPTWEVVSLPIVSetppILFDIEFDtkNPKLGWIVGNRGTFLQTADGGKTWEAKSfanLDPDEEINYRFTKVSFLDGEGWIIGKPAILLHTRDGGAS 176
                 56779******9876556689*****988999************************999999************************************* PP

                 -EE----TT-SS-EEEEEEEETTEEEEEETT--EEEESSTTSSEEEEE-S--...................--EEEEEE-TTS-EEEEETTSSEEEEE- CS
    PSII_BNR  94 WerikLsekLPGePllitalgkkkaelvtdvgaiYrtedagknWkaqveeav...................GsirniersedGeYvavssrGnfystwe 173
                 Wer++Ls+kLPG+P+ i+alg+ kae+ t++gaiY t++ag+nWkaqv+e++                   Gsi++i+r++dG+Y+avssrGnfy+t++
  KOO24415.1 177 WERVPLSPKLPGDPYGIVALGPGKAEMSTSAGAIYVTDNAGRNWKAQVRETIdatlnrvsssgvqgasyfsGSINSIQRDADGSYLAVSSRGNFYLTYK 275
                 *************************************************************************************************** PP

                 TT-SS-EEEE--SSS-EEEEEE-TT...S-EEEEETTTEEEEEE....TTEEEEE---B-TTSS--S-EEEEEESSS.S-EEEEESTT-EEEESSTTSS CS
    PSII_BNR 174 pgqdaWephnressrrlqnmGfepd...gelWllarGgelqfsd...eeedeeefsealapiksngyglldlayrde.keiwvaGGsgtllvskDgGkt 265
                 pg+++W phnre+srr+ +mG  +d   ++lW+++ Gge+  +     +++  +   +  +i+s gyglld+a+ ++ k++w++GG+gt++ sk+gG++
  KOO24415.1 276 PGEEFWIPHNRETSRRITSMGSIKDrmtDGLWMTTAGGEISKTPagaVDTQLINIPFEKLQIRSGGYGLLDVAFLPDgKTAWAVGGGGTIFGSKNGGES 374
                 **********************99988899**********99986555566666666778999***********9886889****************** PP

                 -EE-GGGTTSSS---EEEEEETTEEEEE-STTEEEE CS
    PSII_BNR 266 wkkdksaekvpsnlykikfleedkgfvlGerGvllr 301
                 w+kdk+a+++psnlyk+kf+ + +g+vlG++Gvllr
  KOO24415.1 375 WEKDKAADDLPSNLYKVKFFPDGTGYVLGSSGVLLR 410
                 ***********************************9 PP

>> BNR  BNR/Asp-box repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.8   0.1   0.00042       1.9       3      11 ..     123     131 ..     123     132 .. 0.87
   2 !    8.0   0.0   0.00077       3.5       2      12 .]     169     179 ..     168     179 .. 0.87
   3 !    8.0   0.0   0.00081       3.7       1      11 [.     211     221 ..     211     222 .. 0.92
   4 !    7.3   0.2    0.0013       5.9       3      12 .]     368     377 ..     368     377 .. 0.92

  Alignments for each domain:
  == domain 1  score: 8.8 bits;  conditional E-value: 0.00042
                 ESSTTSS-E CS
         BNR   3 StDgGktWs 11 
                 + DgGktW+
  KOO24415.1 123 TADGGKTWE 131
                 67******8 PP

  == domain 2  score: 8.0 bits;  conditional E-value: 0.00077
                 EESSTTSS-EE CS
         BNR   2 yStDgGktWsk 12 
                 +++DgG +W++
  KOO24415.1 169 HTRDGGASWER 179
                 699******85 PP

  == domain 3  score: 8.0 bits;  conditional E-value: 0.00081
                 EEESSTTSS-E CS
         BNR   1 yyStDgGktWs 11 
                 y++++ G++W+
  KOO24415.1 211 YVTDNAGRNWK 221
                 89********8 PP

  == domain 4  score: 7.3 bits;  conditional E-value: 0.0013
                 ESSTTSS-EE CS
         BNR   3 StDgGktWsk 12 
                 S++gG++W+k
  KOO24415.1 368 SKNGGESWEK 377
                 89******96 PP

>> Sortilin-Vps10  Sortilin, neurotensin receptor 3,
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.9   0.0   0.00012      0.55       3      63 ..     120     183 ..     118     192 .. 0.81
   2 !    4.7   0.0    0.0025        11     372     393 ..     203     224 ..     191     232 .. 0.72
   3 ?    2.4   0.0     0.012        53      37      82 ..     355     400 ..     347     410 .. 0.68

  Alignments for each domain:
  == domain 1  score: 8.9 bits;  conditional E-value: 0.00012
                     EEEESSTTSS-EE-GG..GGTTEEBE.-EEE-STTS--EEEEEES-EEEEESSTTSSEEEEE-S CS
  Sortilin-Vps10   3 vyiSeDeGktwkkvke..klkgeaiq.eivvhpfdkkkaylltdskklyvttDrGktwkkfklp 63 
                     + ++ D Gktw+ ++      +e+i+ +++   f + +  ++++   l+ t+D G++w+++ l+
      KOO24415.1 120 FLQTADGGKTWEAKSFanLDPDEEINyRFTKVSFLDGEGWIIGKPAILLHTRDGGASWERVPLS 183
                     67899******9876522333444556999*****************************98775 PP

  == domain 2  score: 4.7 bits;  conditional E-value: 0.0025
                     HSS.S-EEEEESSSSSS-EEEE CS
  Sortilin-Vps10 372 ksyeeadtfiSrDaGltWkevl 393
                      s + + ++++++aG +Wk   
      KOO24415.1 203 MSTSAGAIYVTDNAGRNWKAQV 224
                     3445788999999999998655 PP

  == domain 3  score: 2.4 bits;  conditional E-value: 0.012
                     -EEEEEES-EEEEESSTTSSEEEEE-SS-BS...S--EEESSETTE CS
  Sortilin-Vps10  37 kaylltdskklyvttDrGktwkkfklpfkpslsaeplsfhakdkdw 82 
                     +a +++ +++++ +++ G++w+k k+ ++   +  +++f ++   +
      KOO24415.1 355 TAWAVGGGGTIFGSKNGGESWEKDKAADDLPSNLYKVKFFPDGTGY 400
                     5566666777888888888888777666655566666666655555 PP

>> DUF4185  Domain of unknown function (DUF4185)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.6   0.0   0.00042       1.9     128     176 ..     119     164 ..     106     186 .. 0.74
   2 ?    3.1   0.1      0.01        45     119     150 ..     200     231 ..     192     294 .. 0.72
   3 ?    1.9   0.0     0.024   1.1e+02     128     151 ..     364     387 ..     345     408 .. 0.74

  Alignments for each domain:
  == domain 1  score: 7.6 bits;  conditional E-value: 0.00042
     DUF4185 128 aiaksdDngetWekvpesvrtnsdtagnenfqqvafvkddgyvYvfgtp 176
                 + ++  D+g+tWe    + + + d ++n +f +v+f+  +g++  +g+p
  KOO24415.1 119 TFLQTADGGKTWEAKSFA-NLDPDEEINYRFTKVSFLDGEGWI--IGKP 164
                 667889******987666.5555568***************97..4555 PP

  == domain 2  score: 3.1 bits;  conditional E-value: 0.01
     DUF4185 119 pgewttnysaiaksdDngetWekvpesvrtns 150
                 + e +t  +ai++ d+ g++W+   +++  ++
  KOO24415.1 200 KAEMSTSAGAIYVTDNAGRNWKAQVRETIDAT 231
                 567789999************87655533333 PP

  == domain 3  score: 1.9 bits;  conditional E-value: 0.024
     DUF4185 128 aiaksdDngetWekvpesvrtnsd 151
                 +i+ s+++ge+Wek++++    s+
  KOO24415.1 364 TIFGSKNGGESWEKDKAADDLPSN 387
                 7999**********9988555544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (414 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       403  (0.0224776); expected 358.6 (0.02)
Passed bias filter:                      321  (0.017904); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.49u 0.23s 00:00:00.72 Elapsed: 00:00:00.39
# Mc/sec: 3222.50
//
Query:       KOO24416.1  [L=413]
Description: hypothetical protein Ctob_006061, partial [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
     0.0013   19.1   5.3     0.0023   18.4   5.3    1.4  1  Got1      Got1/Sft2-like family


Domain annotation for each model (and alignments):
>> Got1  Got1/Sft2-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.4   5.3   1.3e-07    0.0023       5     110 ..      51     156 ..      38     159 .. 0.87

  Alignments for each domain:
  == domain 1  score: 18.4 bits;  conditional E-value: 1.3e-07
        Got1   5 flls..llglpllflkprkFallytlGnilflastafLiGpkkqlkkmfskerliativyllsllltLyaalvlkstlltllfvivqllallwyllsyi 101
                 f+l   l g+++++++p+  ++ +++G+++f +++++L+   +ql++++s er+++t++  +++l+   aa   ++ l   lf ++ l+a+    +s i
  KOO24416.1  51 FSLIqvLTGVMTIIMSPARAVARLCVGTFCFHLAFLVLRR-EEQLRRLTSVERMPYTMTTGVTMLAAAWAAAE-NKRLGSYLFGALHLFAFSLDAFSHI 147
                 333356889999999**999*****************996.67****************99999999996666.88899999999************** PP

        Got1 102 Pggrsalkk 110
                 Pgg+++++ 
  KOO24416.1 148 PGGKRVATW 156
                 ***998765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (413 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       887  (0.0494729); expected 358.6 (0.02)
Passed bias filter:                      356  (0.0198561); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.25s 00:00:00.72 Elapsed: 00:00:00.39
# Mc/sec: 3208.62
//
Query:       KOO24417.1  [L=541]
Description: 3-dehydroquinate synthase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    3.2e-61  206.8   0.0    4.7e-61  206.2   0.0    1.2  1  DHQ_synthase  3-dehydroquinate synthase
    3.8e-07   30.1   0.0    6.4e-07   29.3   0.0    1.4  1  Fe-ADH_2      Iron-containing alcohol dehydrogenase


Domain annotation for each model (and alignments):
>> DHQ_synthase  3-dehydroquinate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  206.2   0.0   5.3e-65   4.7e-61       2     245 ..     228     472 ..     227     486 .. 0.95

  Alignments for each domain:
  == domain 1  score: 206.2 bits;  conditional E-value: 5.3e-65
                   EEE-SSGGGCCHHHHHHHHHHHHHTT.--TT-EEEEEESHHHHHHHHHHHHHBTT--EEEEEE-SHHHHHTTTSSSEEEEEETTEEEEEEEE---SE CS
  DHQ_synthase   2 lvvpdgeksKsletlekildalleak.leRksllialGGGvvgDlaGfvAatylRGvrfvqvPttllaqvDssvGgKtainlplgKNliGafaqPka 97 
                   +v+++ e  K+l+t++ +ld+l +++ l+R++ ++++GGGv++D aGf+ a+++RG+ + ++Pttll+ vD+svG K+ain+ + KN +G f+ P+ 
    KOO24417.1 228 VVIEANEGKKNLDTFTFLLDELKRTDpLRRSEPVLCVGGGVLTDTAGFACACWRRGIPWCRMPTTLLGIVDASVGIKVAINY-HRKNGVGHFYSPTH 323
                   7899*******************99889*****************************************************9.78************ PP

                   EEEEGGGGGGS-HHHHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHC..TTTHHHHHHHHHHHHHHHHHHHHHCCTTTTGGGGGGTTHHHHHHHHHH CS
  DHQ_synthase  98 vlidlevLktLperelraGlaEviKyalikdeelfelleenaeallk..eeeeealeeliarsievkaevveeDekekglralLnlGHtigHaiEal 192
                    +id ++L t+++ e+r+G++E++K ali+d++lfel++++ ++l++   ++  +++++i+ si +  e++  D +e+ l + +++GHt++ ++Ea 
    KOO24417.1 324 TFIDNSFLGTISQAEIRSGVGEIMKAALIHDKRLFELMRDHGARLIAdrFQKGPEAATVIKYSIDAMLECIGPDLWEEALLRPMDYGHTFSRTLEAD 420
                   ******************************************999886656889999**************************************** PP

                   HTTTTS-HHHHHHHHHHHHHHHHHHTTSS-HHHHHHHHHHHHHTT---STTTT CS
  DHQ_synthase 193 lgyekllHGeaVaiGmvlaaelseklgllkkeeverllkllkklglpvslkel 245
                    ++ kl+HGeaVa++ ++ a ++e++g+l+++++e+ll+l ++lglp+s+   
    KOO24417.1 421 ERF-KLRHGEAVAVDSLFSALIAEAKGILPTDQAESLLALYEHLGLPCSIAGV 472
                   ***.*******************************************998766 PP

>> Fe-ADH_2  Iron-containing alcohol dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.3   0.0   7.1e-11   6.4e-07      19     197 ..     195     381 ..     185     432 .. 0.84

  Alignments for each domain:
  == domain 1  score: 29.3 bits;  conditional E-value: 7.1e-11
    Fe-ADH_2  19 lkkvllvadentkkaagekveeslkeagikve..vveeveeeadleeveklvealre....ketdlvvavGgGtiiDiakyvsa..klnvpyvsvpTaa 109
                   +++ ++d+n+++++g k++e  ++ g+k++  v+e  e++++l++   l+++l+     ++ + v+ vGgG++ D+a ++ a  ++++p   +pT++
  KOO24417.1 195 TGRLIAIVDSNVWELYGAKMREWAESVGLKLDhvVIEANEGKKNLDTFTFLLDELKRtdplRRSEPVLCVGGGVLTDTAGFACAcwRRGIPWCRMPTTL 293
                 44677789*********************99767888899999************643455899***************9876433999*********9 PP

    Fe-ADH_2 110 SvDGfaspgaslvvd.gkkrtvakaaaPlaviaDldvlaeAPrrllasGvGDllgkytaladwklanevseplaklsaamvqeaaeklv 197
                      as+g+ +  + ++k  v +   P+  ++D ++l +  ++ ++sGvG+++ k   ++d +l + + ++ a+l+a+ +q+  e+++
  KOO24417.1 294 LGIVDASVGIKVAINyHRKNGVGHFYSPTHTFIDNSFLGTISQAEIRSGVGEIM-KAALIHDKRLFELMRDHGARLIADRFQKGPEAAT 381
                 86666899999999999999998899**************************98.6666778888888888888888888877766655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (541 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       259  (0.0144459); expected 358.6 (0.02)
Passed bias filter:                      252  (0.0140554); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.50u 0.22s 00:00:00.72 Elapsed: 00:00:00.39
# Mc/sec: 4109.97
//
Query:       KOO24418.1  [L=193]
Description: hypothetical protein Ctob_006069 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (193 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       302  (0.0168442); expected 358.6 (0.02)
Passed bias filter:                      280  (0.0156172); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.21s 00:00:00.57 Elapsed: 00:00:00.36
# Mc/sec: 1589.50
//
Query:       KOO24419.1  [L=681]
Description: tpr repeat [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.8e-16   57.5   0.7    0.00045   20.1   0.0    5.7  5  TPR_2     Tetratricopeptide repeat
    6.5e-15   54.2   0.0      0.001   18.8   0.0    4.7  4  TPR_1     Tetratricopeptide repeat
    1.3e-09   38.2   5.6    1.5e-06   28.4   0.1    4.5  6  TPR_12    Tetratricopeptide repeat
    8.3e-09   36.0   3.7    5.1e-05   23.8   0.1    4.4  5  TPR_16    Tetratricopeptide repeat
    1.8e-08   33.9   1.0      0.057   13.6   0.0    5.0  5  TPR_8     Tetratricopeptide repeat
    6.4e-08   32.1   1.1      0.023   14.7   0.0    4.6  5  TPR_7     Tetratricopeptide repeat
    7.5e-08   32.6  12.1        1.5    9.9   0.0    5.4  4  TPR_14    Tetratricopeptide repeat
    2.2e-07   31.3   1.4     0.0037   17.7   0.2    3.0  2  TPR_19    Tetratricopeptide repeat
    2.3e-05   24.0   0.1        1.4    8.7   0.0    4.1  4  TPR_11    TPR repeat
    2.7e-05   23.9   9.9      0.027   14.3   0.1    5.0  5  TPR_10    Tetratricopeptide repeat
    0.00017   22.0   6.4        1.2   10.0   0.0    4.7  4  TPR_6     Tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> TPR_2  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.6   0.1   0.00031      0.51      16      33 ..      56      73 ..      46      74 .. 0.90
   2 !   20.1   0.0   2.8e-07   0.00045       4      32 ..      83     111 ..      81     113 .. 0.92
   3 !   11.9   0.0   0.00012      0.19       3      30 ..     119     146 ..     118     148 .. 0.94
   4 !    7.4   0.0    0.0033       5.3       3      30 ..     152     179 ..     151     183 .. 0.91
   5 ?   -0.9   0.0       1.5   2.4e+03       2      29 ..     189     216 ..     188     217 .. 0.88

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00031
       TPR_2 16 dyeeAleafekAleldPn 33
                +++ Al++++kAl+l P+
  KOO24419.1 56 KWQAALDLYRKALSLSPT 73
                799**************7 PP

  == domain 2  score: 20.1 bits;  conditional E-value: 2.8e-07
       TPR_2   4 lynlGlayyklgdyeeAleafekAleldP 32 
                 ++n+G+++++l+++ eA+e+++ Al+  P
  KOO24419.1  83 NNNIGWSLFQLNHWTEAEEYYQMALRAVP 111
                 689**********************9877 PP

  == domain 3  score: 11.9 bits;  conditional E-value: 0.00012
       TPR_2   3 alynlGlayyklgdyeeAleafekAlel 30 
                 a+ n++ +  ++g+++ A+eaf+ A++l
  KOO24419.1 119 AYINMATLFKAQGKPKAAIEAFRSAVQL 146
                 799***********************98 PP

  == domain 4  score: 7.4 bits;  conditional E-value: 0.0033
       TPR_2   3 alynlGlayyklgdyeeAleafekAlel 30 
                 ++ +lG+a++   + +eA   +++ l++
  KOO24419.1 152 IWAQLGRALMMEFRVDEAMSTLQEGLAY 179
                 6999*****************9999986 PP

  == domain 5  score: -0.9 bits;  conditional E-value: 1.5
       TPR_2   2 ealynlGlayyklgdyeeAleafekAle 29 
                 e+++ lG + + + ++  A  +f k++ 
  KOO24419.1 189 ECHWLLGTLNMWRRRWSTASTHFIKSID 216
                 78999**************999988876 PP

>> TPR_1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.3   0.0    0.0003      0.48      16      33 ..      56      73 ..      56      74 .. 0.91
   2 !   18.8   0.0   6.4e-07     0.001       5      29 ..      84     108 ..      81     111 .. 0.95
   3 !   18.3   0.0   8.7e-07    0.0014       3      30 ..     119     146 ..     118     146 .. 0.96
   4 ?   -0.0   0.0      0.56   9.1e+02       3      28 ..     152     177 ..     151     180 .. 0.85

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.0003
                -HHHHHHHHHHHHHHSTT CS
       TPR_1 16 kydeAleyyekALelnPn 33
                k++ Al+ y+kAL+l P+
  KOO24419.1 56 KWQAALDLYRKALSLSPT 73
                6799************97 PP

  == domain 2  score: 18.8 bits;  conditional E-value: 6.4e-07
                 HHHHHHHHHTT-HHHHHHHHHHHHH CS
       TPR_1   5 ynlGnayfklgkydeAleyyekALe 29 
                 +n+G  +f+l+ + eA+eyy+ AL+
  KOO24419.1  84 NNIGWSLFQLNHWTEAEEYYQMALR 108
                 8**********************96 PP

  == domain 3  score: 18.3 bits;  conditional E-value: 8.7e-07
                 HHHHHHHHHHHTT-HHHHHHHHHHHHHH CS
       TPR_1   3 alynlGnayfklgkydeAleyyekALel 30 
                 a+ n++ ++  +gk++ A+e+++ A++l
  KOO24419.1 119 AYINMATLFKAQGKPKAAIEAFRSAVQL 146
                 89***********************997 PP

  == domain 4  score: -0.0 bits;  conditional E-value: 0.56
                 HHHHHHHHHHHTT-HHHHHHHHHHHH CS
       TPR_1   3 alynlGnayfklgkydeAleyyekAL 28 
                 ++ +lG a++   + deA    ++ L
  KOO24419.1 152 IWAQLGRALMMEFRVDEAMSTLQEGL 177
                 6999********999**998877766 PP

>> TPR_12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.4   0.5     0.014        23      40      74 ..      34      70 ..      26      73 .. 0.63
   2 !   19.6   2.1   4.9e-07    0.0008       3      75 ..      42     110 ..      40     112 .. 0.87
   3 !   28.4   0.1   9.1e-10   1.5e-06       5      74 ..      82     146 ..      78     149 .. 0.90
   4 ?   -2.8   0.0         5   8.1e+03      51      73 ..     156     178 ..     152     182 .. 0.56
   5 ?    0.3   0.0      0.54   8.8e+02       6      32 ..     192     217 ..     187     219 .. 0.87
   6 ?   -3.7   0.3       9.3   1.5e+04      52      75 ..     275     298 ..     273     301 .. 0.69

  Alignments for each domain:
  == domain 1  score: 5.4 bits;  conditional E-value: 0.014
      TPR_12 40 dhpltattlrnLgrlyral..gryeeAlelleealai 74
                + p+ta++  +L  + +++   ++++Al+l+++al +
  KOO24419.1 34 ETPWTAEAADALLAADFMQaeYKWQAALDLYRKALSL 70
                5666666666666664433114567888888888765 PP

  == domain 2  score: 19.6 bits;  conditional E-value: 4.9e-07
      TPR_12   3 atalnnlaavlrrlgrydeAlellekaleiarrllGpdhpltattlrnLgrlyralgryeeAlelleealaia 75 
                 a al   a++ ++  +++ Al+l++kal +    + p   +   + +n+g+ +++l+++ eA+e+++ al++ 
  KOO24419.1  42 ADAL-LAADFMQAEYKWQAALDLYRKALSLS---PTPPAFQSYVINNNIGWSLFQLNHWTEAEEYYQMALRAV 110
                 5566.56667788889***************...5588888999**************************975 PP

  == domain 3  score: 28.4 bits;  conditional E-value: 9.1e-10
      TPR_12   5 alnnlaavlrrlgrydeAlellekaleiarrllGpdhpltattlrnLgrlyralgryeeAlelleealai 74 
                 + nn++  l++l  ++eA+e+++ al+++     p  p t  +++n+++l+ a+g++++A+e+++ a+++
  KOO24419.1  82 INNNIGWSLFQLNHWTEAEEYYQMALRAV-----PAAPPTDHAYINMATLFKAQGKPKAAIEAFRSAVQL 146
                 567899999********************.....77777777*************************987 PP

  == domain 4  score: -2.8 bits;  conditional E-value: 5
      TPR_12  51 LgrlyralgryeeAlelleeala 73 
                 Lgr++ +  r +eA + l+e la
  KOO24419.1 156 LGRALMMEFRVDEAMSTLQEGLA 178
                 44444444455666666666555 PP

  == domain 5  score: 0.3 bits;  conditional E-value: 0.54
      TPR_12   6 lnnlaavlrrlgrydeAlellekalei 32 
                 +  l+++ +++ r+  A +++ k++++
  KOO24419.1 192 W-LLGTLNMWRRRWSTASTHFIKSIDL 217
                 4.799******************9876 PP

  == domain 6  score: -3.7 bits;  conditional E-value: 9.3
      TPR_12  52 grlyralgryeeAlelleealaia 75 
                 +   ++ + y++A++  +++ a+a
  KOO24419.1 275 ASDAEKEESYRDAHAVGNRVRARA 298
                 555566677888888888887766 PP

>> TPR_16  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.6   0.7   1.6e-07   0.00026      12      68 .]      56     114 ..      44     114 .. 0.92
   2 !   23.8   0.1   3.2e-08   5.1e-05       3      62 ..      86     145 ..      84     151 .. 0.94
   3 !    7.2   0.2     0.005       8.2       2      54 ..     122     170 ..     121     188 .. 0.69
   4 ?   -0.4   0.1       1.2   1.9e+03      13      41 ..     166     195 ..     154     199 .. 0.70
   5 ?   -2.4   2.1         5   8.1e+03       6      52 ..     277     305 ..     272     323 .. 0.53

  Alignments for each domain:
  == domain 1  score: 21.6 bits;  conditional E-value: 1.6e-07
      TPR_16  12 dyddAaaaleaalkrdpssPd..aaeAllllgdaalrqgrlaeAaalyraalraapdap 68 
                 ++++A+ +++ al + p +P+   +   ++ g+++++++ ++eA+++y+ alra p ap
  KOO24419.1  56 KWQAALDLYRKALSLSPTPPAfqSYVINNNIGWSLFQLNHWTEAEEYYQMALRAVPAAP 114
                 699*****************888888889***************************997 PP

  == domain 2  score: 23.8 bits;  conditional E-value: 3.2e-08
      TPR_16   3 laraalragdyddAaaaleaalkrdpssPdaaeAllllgdaalrqgrlaeAaalyraalr 62 
                  + ++++++++++A+++++ al++ p  P + +A+ + + ++ +qg  ++A++++r+a++
  KOO24419.1  86 IGWSLFQLNHWTEAEEYYQMALRAVPAAPPTDHAYINMATLFKAQGKPKAAIEAFRSAVQ 145
                 6899*********************98888***************************985 PP

  == domain 3  score: 7.2 bits;  conditional E-value: 0.005
      TPR_16   2 alaraalragdyddAaaaleaalkrdpssPdaaeAllllgdaalrqgrlaeAa 54 
                 ++a+++ ++g++ +A++a++ a+ + +  P     +  lg+a+    r++eA 
  KOO24419.1 122 NMATLFKAQGKPKAAIEAFRSAVQLTKMLP----IWAQLGRALMMEFRVDEAM 170
                 678899999999999999999998885444....5667777776666666666 PP

  == domain 4  score: -0.4 bits;  conditional E-value: 1.2
      TPR_16  13 yddAaaaleaalkrdps.sPdaaeAllllg 41 
                  d+A   l++ l+++++ +P a e ++llg
  KOO24419.1 166 VDEAMSTLQEGLAYRGDaDPGAQECHWLLG 195
                 566677776666666543677999999998 PP

  == domain 5  score: -2.4 bits;  conditional E-value: 5
      TPR_16   6 aalragdyddAaaaleaalkrdpssPdaaeAllllgdaalrqgrlae 52 
                 +a +   y+dA                   A  ++ +a++ q+  a+
  KOO24419.1 277 DAEKEESYRDAH------------------AVGNRVRARALQQHTAL 305
                 444444455555..................44445555554444444 PP

>> TPR_8  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.8   0.0      0.05        81      19      33 ..      59      73 ..      58      74 .. 0.87
   2 !    6.9   0.0    0.0052       8.5       4      29 ..      83     108 ..      80     111 .. 0.90
   3 !   13.6   0.0   3.5e-05     0.057       2      30 ..     118     146 ..     117     148 .. 0.94
   4 ?    4.0   0.0     0.044        72       2      29 ..     151     178 ..     150     182 .. 0.89
   5 ?   -3.2   0.1       9.1   1.5e+04      16      23 ..     475     482 ..     475     483 .. 0.83

  Alignments for each domain:
  == domain 1  score: 3.8 bits;  conditional E-value: 0.05
                HHHHHHHHHHHHHHH CS
       TPR_8 19 eAkeyyekaleldpd 33
                +A   y+kal+l+p+
  KOO24419.1 59 AALDLYRKALSLSPT 73
                68889********96 PP

  == domain 2  score: 6.9 bits;  conditional E-value: 0.0052
                 HHHHHHHHHHTT-HHHHHHHHHHHHH CS
       TPR_8   4 yynlgsiylklgdyeeAkeyyekale 29 
                  +n+g+ +++l+   eA+eyy+ al+
  KOO24419.1  83 NNNIGWSLFQLNHWTEAEEYYQMALR 108
                 68*******************97775 PP

  == domain 3  score: 13.6 bits;  conditional E-value: 3.5e-05
                 CHHHHHHHHHHHTT-HHHHHHHHHHHHHH CS
       TPR_8   2 eayynlgsiylklgdyeeAkeyyekalel 30 
                 +ay n++ + + +g+ ++A+e+++ a++l
  KOO24419.1 118 HAYINMATLFKAQGKPKAAIEAFRSAVQL 146
                 69************************998 PP

  == domain 4  score: 4.0 bits;  conditional E-value: 0.044
                 CHHHHHHHHHHHTT-HHHHHHHHHHHHH CS
       TPR_8   2 eayynlgsiylklgdyeeAkeyyekale 29 
                 +++ +lg++++   + +eA++++++ l 
  KOO24419.1 151 PIWAQLGRALMMEFRVDEAMSTLQEGLA 178
                 79********************998775 PP

  == domain 5  score: -3.2 bits;  conditional E-value: 9.1
                 -HHHHHHH CS
       TPR_8  16 dyeeAkey 23 
                 dy+eAk +
  KOO24419.1 475 DYDEAKMF 482
                 89***976 PP

>> TPR_7  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.6   0.0     0.024        38      14      32 ..      56      72 ..      52      76 .. 0.79
   2 !   14.7   0.0   1.4e-05     0.023       3      27 ..      84     109 ..      82     115 .. 0.88
   3 !    7.6   0.0    0.0026       4.2       1      27 [.     119     145 ..     119     150 .. 0.87
   4 ?   -2.2   0.0       3.4   5.6e+03       3      30 ..     154     179 ..     152     182 .. 0.78
   5 ?   -2.3   0.1       3.7     6e+03      21      33 ..     486     498 ..     485     500 .. 0.82

  Alignments for each domain:
  == domain 1  score: 4.6 bits;  conditional E-value: 0.024
       TPR_7 14 dyeeAielyeqsLaltkdp 32
                +++ A++ly++  al  +p
  KOO24419.1 56 KWQAALDLYRK--ALSLSP 72
                69*********..555554 PP

  == domain 2  score: 14.7 bits;  conditional E-value: 1.4e-05
       TPR_7   3 lnLarlysrlGdyeeAielyeqsL.a 27 
                 +n++   ++l+++ eA+e+y+ +L a
  KOO24419.1  84 NNIGWSLFQLNHWTEAEEYYQMALrA 109
                 799*******************7744 PP

  == domain 3  score: 7.6 bits;  conditional E-value: 0.0026
       TPR_7   1 aLlnLarlysrlGdyeeAielyeqsLa 27 
                 a+ n+a l+ ++G+ + Aie ++ + +
  KOO24419.1 119 AYINMATLFKAQGKPKAAIEAFRSAVQ 145
                 799******************998554 PP

  == domain 4  score: -2.2 bits;  conditional E-value: 3.4
       TPR_7   3 lnLarlysrlGdyeeAielyeqsLaltk 30 
                  +L+r+   + + +eA + +++  +l++
  KOO24419.1 154 AQLGRALMMEFRVDEAMSTLQE--GLAY 179
                 5788888888888999999998..7776 PP

  == domain 5  score: -2.3 bits;  conditional E-value: 3.7
       TPR_7  21 lyeqsLaltkdpe 33 
                 ++ q+Lal k+p+
  KOO24419.1 486 FLAQQLALLKEPL 498
                 6789****99986 PP

>> TPR_14  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.8   1.8   0.00093       1.5       5      37 ..      45      77 ..      39      80 .. 0.76
   2 !    8.5   0.1    0.0024         4       8      35 ..      87     114 ..      86     126 .. 0.78
   3 !    9.9   0.0   0.00089       1.5       4      30 ..     120     146 ..     117     148 .. 0.87
   4 !    8.1   0.2    0.0033       5.3       3      35 ..     152     188 ..     150     197 .. 0.79

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.00093
      TPR_14  5 lalaeallalGdpdeAiallrralalaPddaea 37
                l++a+++ a  ++++A++l+r+al+l P+++++
  KOO24419.1 45 LLAADFMQAEYKWQAALDLYRKALSLSPTPPAF 77
                344555556668*****************9986 PP

  == domain 2  score: 8.5 bits;  conditional E-value: 0.0024
      TPR_14   8 aeallalGdpdeAiallrralalaPdda 35 
                 ++ l++l  + eA+++++ al++ P+ +
  KOO24419.1  87 GWSLFQLNHWTEAEEYYQMALRAVPAAP 114
                 567999****************988765 PP

  == domain 3  score: 9.9 bits;  conditional E-value: 0.00089
      TPR_14   4 llalaeallalGdpdeAiallrralal 30 
                 +  +a ++ a+G+p++Ai+++r a++l
  KOO24419.1 120 YINMATLFKAQGKPKAAIEAFRSAVQL 146
                 55689999****************986 PP

  == domain 4  score: 8.1 bits;  conditional E-value: 0.0033
      TPR_14   3 allalaeallalGdpdeAiallrrala....laPdda 35 
                  +++l++al+   + deA+  l++ la    ++P+ +
  KOO24419.1 152 IWAQLGRALMMEFRVDEAMSTLQEGLAyrgdADPGAQ 188
                 59************************97444444444 PP

>> TPR_19  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.3   0.1   0.00023      0.38       4      56 ..      54     111 ..      51     120 .. 0.85
   2 !   17.7   0.2   2.3e-06    0.0037       3      57 ..     129     182 ..     127     188 .. 0.92

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00023
      TPR_19   4 egdyaeAlalleqalqedpk.....naearllLAeallalgqldeAealLdalpeedp 56 
                 e + ++Al+l+++al+ +p      +  +  +    l++l++++eAe+  + ++++ p
  KOO24419.1  54 EYKWQAALDLYRKALSLSPTppafqSYVINNNIGWSLFQLNHWTEAEEYYQMALRAVP 111
                 56789***************8888555555588***************9999888766 PP

  == domain 2  score: 17.7 bits;  conditional E-value: 2.3e-06
      TPR_19   3 aegdyaeAlalleqalqedpknaearllLAeallalgqldeAealLdalpeedpd 57 
                 a+g++ +A++++++a q   k++ ++++L +al+   ++deA+ +L++ ++   d
  KOO24419.1 129 AQGKPKAAIEAFRSAVQL-TKMLPIWAQLGRALMMEFRVDEAMSTLQEGLAYRGD 182
                 79*************999.88**************************99988877 PP

>> TPR_11  TPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.7   0.0   0.00084       1.4       9      28 ..      56      75 ..      56      79 .. 0.88
   2 ?    1.4   0.0      0.16   2.7e+02       4      27 ..      90     113 ..      87     114 .. 0.86
   3 !    8.1   0.0    0.0013       2.1       4      28 ..     127     151 ..     125     162 .. 0.86
   4 ?   -1.4   0.1       1.2   1.9e+03       1      10 [.     443     452 ..     443     452 .. 0.87

  Alignments for each domain:
  == domain 1  score: 8.7 bits;  conditional E-value: 0.00084
      TPR_11  9 kyeeAieaYkkAlkldPdna 28
                k+ +A+  Y+kAl l+P+ +
  KOO24419.1 56 KWQAALDLYRKALSLSPTPP 75
                6899*************866 PP

  == domain 2  score: 1.4 bits;  conditional E-value: 0.16
      TPR_11   4 yyeqGkyeeAieaYkkAlkldPdn 27 
                 +++++ ++eA e Y+ Al+  P  
  KOO24419.1  90 LFQLNHWTEAEEYYQMALRAVPAA 113
                 89***************9977765 PP

  == domain 3  score: 8.1 bits;  conditional E-value: 0.0013
      TPR_11   4 yyeqGkyeeAieaYkkAlkldPdna 28 
                 + +qGk ++Aiea++ A++l+   +
  KOO24419.1 127 FKAQGKPKAAIEAFRSAVQLTKMLP 151
                 679*****************98877 PP

  == domain 4  score: -1.4 bits;  conditional E-value: 1.2
      TPR_11   1 GdayyeqGky 10 
                 Gday +qG +
  KOO24419.1 443 GDAYNAQGSL 452
                 99*****975 PP

>> TPR_10  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.0   0.1     0.015        24      16      31 ..      55      70 ..      48      71 .. 0.87
   2 !   14.3   0.1   1.7e-05     0.027       6      30 ..      84     108 ..      81     109 .. 0.94
   3 !    6.8   0.0    0.0038       6.1       4      33 ..     119     148 ..     118     150 .. 0.92
   4 ?   -0.7   0.1      0.89   1.5e+03       8      27 ..     156     175 ..     154     180 .. 0.80
   5 ?   -1.2   0.1       1.3   2.1e+03      13      28 ..     288     303 ..     285     307 .. 0.77

  Alignments for each domain:
  == domain 1  score: 5.0 bits;  conditional E-value: 0.015
      TPR_10 16 grydeAealleealai 31
                +++++A++l+++al++
  KOO24419.1 55 YKWQAALDLYRKALSL 70
                799**********986 PP

  == domain 2  score: 14.3 bits;  conditional E-value: 1.7e-05
      TPR_10   6 nNLanalrqrgrydeAealleeala 30 
                 nN++  l+q++ ++eAe++++ al+
  KOO24419.1  84 NNIGWSLFQLNHWTEAEEYYQMALR 108
                 9********************9996 PP

  == domain 3  score: 6.8 bits;  conditional E-value: 0.0038
      TPR_10   4 slnNLanalrqrgrydeAealleealairr 33 
                 ++ N+a +  ++g+ ++A + ++ a+++ +
  KOO24419.1 119 AYINMATLFKAQGKPKAAIEAFRSAVQLTK 148
                 799***********************9976 PP

  == domain 4  score: -0.7 bits;  conditional E-value: 0.89
      TPR_10   8 LanalrqrgrydeAeallee 27 
                 L++al   +r deA+  l+e
  KOO24419.1 156 LGRALMMEFRVDEAMSTLQE 175
                 999***********876666 PP

  == domain 5  score: -1.2 bits;  conditional E-value: 1.3
      TPR_10  13 rqrgrydeAealleea 28 
                 +++g++ +A+al++++
  KOO24419.1 288 HAVGNRVRARALQQHT 303
                 6789999*****6654 PP

>> TPR_6  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.0   0.3      0.25   4.1e+02       9      31 ..      50      72 ..      42      73 .. 0.75
   2 !   10.0   0.0   0.00072       1.2       5      29 ..      85     109 ..      85     112 .. 0.90
   3 !    9.2   0.1    0.0012         2       2      28 ..     119     145 ..     118     146 .. 0.91
   4 ?   -0.5   0.1       1.5   2.5e+03       5      24 ..     155     174 ..     154     175 .. 0.82

  Alignments for each domain:
  == domain 1  score: 2.0 bits;  conditional E-value: 0.25
                HHHHHHHHHHHHHHHHHHHHH-T CS
       TPR_6  9 syrklgdtdkAlealerlikeYP 31
                 +++  ++++Al+++++ ++  P
  KOO24419.1 50 FMQAEYKWQAALDLYRKALSLSP 72
                55554499*********998766 PP

  == domain 2  score: 10.0 bits;  conditional E-value: 0.00072
                 HHHHHHHHHHHHHHHHHHHHHHHHH CS
       TPR_6   5 klalsyrklgdtdkAlealerlike 29 
                 ++++s+++l+ +++A e+++  ++ 
  KOO24419.1  85 NIGWSLFQLNHWTEAEEYYQMALRA 109
                 59******99**********99875 PP

  == domain 3  score: 9.2 bits;  conditional E-value: 0.0012
                 HHHHHHHHHHHHHHHHHHHHHHHHHHH CS
       TPR_6   2 AlyklalsyrklgdtdkAlealerlik 28 
                 A+ ++a +++++g++ +A+ea+++ ++
  KOO24419.1 119 AYINMATLFKAQGKPKAAIEAFRSAVQ 145
                 7789*******************9876 PP

  == domain 4  score: -0.5 bits;  conditional E-value: 1.5
                 HHHHHHHHHHHHHHHHHHHH CS
       TPR_6   5 klalsyrklgdtdkAleale 24 
                 +l++++ +  + d+A+ +l+
  KOO24419.1 155 QLGRALMMEFRVDEAMSTLQ 174
                 578888886699******99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (681 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       451  (0.0251548); expected 358.6 (0.02)
Passed bias filter:                      383  (0.021362); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.64u 0.25s 00:00:00.89 Elapsed: 00:00:00.45
# Mc/sec: 4505.87
//
Query:       KOO24420.1  [L=127]
Description: hypothetical protein Ctob_006063 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (127 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       272  (0.015171); expected 358.6 (0.02)
Passed bias filter:                      268  (0.0149478); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.25s 00:00:00.58 Elapsed: 00:00:00.37
# Mc/sec: 1019.58
//
Query:       KOO24421.1  [L=381]
Description: chaperone protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    9.3e-40  136.1   0.0    1.3e-39  135.6   0.0    1.2  1  DnaJ_C          DnaJ C terminal domain
    3.2e-24   84.8   0.2    4.8e-24   84.3   0.2    1.3  1  DnaJ            DnaJ domain
    7.3e-12   45.5  17.8    1.3e-11   44.7  17.8    1.4  1  DnaJ_CXXCXGXG   DnaJ central domain
     0.0091   15.9   2.5     0.0091   15.9   2.5    2.7  2  Anti-TRAP       Tryptophan RNA-binding attenuator protein inh
  ------ inclusion threshold ------
       0.05   13.6   6.9       0.17   11.9   7.0    1.8  1  DZR             Double zinc ribbon
       0.44   10.6   5.4       0.77    9.8   5.4    1.4  1  zinc-ribbons_6  zinc-ribbons
       0.97    9.5   8.9       0.41   10.7   1.5    2.3  2  HypA            Hydrogenase/urease nickel incorporation, meta
        4.8    7.9   6.2         57    4.5   2.0    3.5  3  zf-ISL3         zinc-finger of transposase IS204/IS1001/IS109


Domain annotation for each model (and alignments):
>> DnaJ_C  DnaJ C terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  135.6   0.0   5.9e-43   1.3e-39       2     148 .]     146     363 ..     145     363 .. 0.97

  Alignments for each domain:
  == domain 1  score: 135.6 bits;  conditional E-value: 5.9e-43
                 EEEEEE-HHHHHH-.EEE.EEEE.........................................................................TEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxx..................................................................xxxxxxx RF
      DnaJ_C   2 eveleisleelykGktkkikikrnvi..................................................................kkekktl 34 
                 +++lei+++ +++G +kki+i++ ++                                                                  +k++k+l
  KOO24421.1 146 RFDLEIDFQTALFGGSKKIRITHLETcgtcsgsgvapgssvttcttcggrgvvlqqvntilgriqqqarcptcggtgqvvekycgscdgkgtNKKSKQL 244
                 689********************999****************************************************************98777779* PP

                 EEEE-TT--TT-EEEETT-SS..SS..S---EEEEEEE---SS-EEETTEEEEEEEEEHHHHHHTEEEEEE-SS-EEEEEE...--TT-EEEETT-S-E CS
                 xxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxx RF
      DnaJ_C  35 evkipaGikdgqkirlegeGd..eeggepGDlivtikvkphpvFkrkgndlyveveislaeallGgklevptldgkvklki...tqpgevlrikgkGmp 128
                 +++ip+G++dg+++r++geGd  ++gg++GDl+v + v+ +p+F+r++ d+y +v++s+ +a+lG++++vpt+dg+ +l++   tqp +++ri+gkG p
  KOO24421.1 245 TITIPPGVEDGNRLRVRGEGDagPKGGPAGDLYVFLAVTADPRFRRDKMDIYSDVSVSYLDAILGATIRVPTVDGEEELTVpagTQPATTMRIPGKGAP 343
                 *********************65555************************************************************************* PP

                 ET...TEE--EEEEEEEE-- CS
                 xxxxxxxxxxxxxxxxxxxx RF
      DnaJ_C 129 klkkpgkrGdlyvevkvefP 148
                 kl++ ++rG +yv+v++e+P
  KOO24421.1 344 KLNDLTSRGTHYVKVNIEIP 363
                 *******************9 PP

>> DnaJ  DnaJ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   84.3   0.2   2.1e-27   4.8e-24       1      63 []      29      90 ..      29      90 .. 0.99

  Alignments for each domain:
  == domain 1  score: 84.3 bits;  conditional E-value: 2.1e-27
                HHHHHHTSSTTG-HHHHHHHHHHHHHHHSTTTSCCHHHHHHHHHHHHHHHHHHTSHHHHHHHH CS
        DnaJ  1 dyYeiLgvskdasedeIkkaYrklalkyHPDknpkdpeaeekFkeineAyevLsdpekRkqYD 63
                d+Y+ Lgv+++a+e+eIk+aYr+ a+k+HPD n ++p a+ekF+ ineAy+vLsdp  R++YD
  KOO24421.1 29 DFYAELGVTRSATEKEIKNAYRNAARKWHPDVN-QSPGAKEKFQSINEAYQVLSDPAMRQRYD 90
                79*******************************.99**************************9 PP

>> DnaJ_CXXCXGXG  DnaJ central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.7  17.8   5.7e-15   1.3e-11       1      67 []     172     236 ..     172     236 .. 0.83

  Alignments for each domain:
  == domain 1  score: 44.7 bits;  conditional E-value: 5.7e-15
  DnaJ_CXXCXGXG   1 CkkCkGsgakkgk.kktCktCkGsGvvreeqkt.lgpfvqqsqstCpeCeGtGkvikekdkCkkCkGkg 67 
                    C +C+Gsg ++g+ ++tC+tC+G+Gvv ++ +t lg ++  +q +Cp+C+GtG+v+  ++ C +C+Gkg
     KOO24421.1 172 CGTCSGSGVAPGSsVTTCTTCGGRGVVLQQVNTiLGRIQ--QQARCPTCGGTGQVV--EKYCGSCDGKG 236
                    9********99666999********76555545455544..5799***********..668******97 PP

>> Anti-TRAP  Tryptophan RNA-binding attenuator protein inhibitory protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   2.5     4e-06    0.0091       5      44 ..     165     200 ..     162     213 .. 0.81
   2 ?    3.0   6.2     0.045     1e+02      12      40 ..     214     236 ..     210     242 .. 0.88

  Alignments for each domain:
  == domain 1  score: 15.9 bits;  conditional E-value: 4e-06
                 -HHHCEEE-TTTTTTSEETTE......E-TTTTTSSEEE- CS
   Anti-TRAP   5 alpeLEtkCdaCngsGkiepeeprasleCPkCsGkglipT 44 
                 ++  LE +C +C gsG +++    +   C  C+G+g+++ 
  KOO24421.1 165 RITHLE-TCGTCSGSGVAPGS---SVTTCTTCGGRGVVLQ 200
                 666676.6************9...7889*********984 PP

  == domain 2  score: 3.0 bits;  conditional E-value: 0.045
                 E-TTTTTTSEETTE......E-TTTTTSS CS
   Anti-TRAP  12 kCdaCngsGkiepeeprasleCPkCsGkg 40 
                  C++C g+G++  +       C  C Gkg
  KOO24421.1 214 RCPTCGGTGQVVEK------YCGSCDGKG 236
                 7*********9999......999999998 PP

>> DZR  Double zinc ribbon
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   7.0   7.7e-05      0.17      12      48 ..     186     232 ..     172     233 .. 0.81

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 7.7e-05
         DZR  12 arfCseCgtk...lkavaa.......edrCpsCgekvdpearfCpeC 48 
                   +C +Cg +   l++v++       + rCp Cg   +  +++C++C
  KOO24421.1 186 VTTCTTCGGRgvvLQQVNTilgriqqQARCPTCGGTGQVVEKYCGSC 232
                 459*******8877766669999999********************* PP

>> zinc-ribbons_6  zinc-ribbons
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   5.4   0.00034      0.77       2      48 ..     171     232 ..     170     246 .. 0.84

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.00034
                     --SSS-S--E.E-SSEEE-TTT--.............EEEEEEE-SSS-S---EEEE.TTEE CS
  zinc-ribbons_6   2 kCpeCqqele.krgeqyhCeaCqe.............dlkkealCpeCeqelevlka.Cgav 48 
                     +C +C    +   ++ ++C +C               +++++a Cp+C+   +v+++ Cg+ 
      KOO24421.1 171 TCGTCSGSGVaPGSSVTTCTTCGGrgvvlqqvntilgRIQQQARCPTCGGTGQVVEKyCGSC 232
                     699999998867778899****99999***********************999985449984 PP

>> HypA  Hydrogenase/urease nickel incorporation, metallochaperone, hypA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.2   0.6     0.019        42      72     101 ..     171     201 ..     145     207 .. 0.75
   2 ?   10.7   1.5   0.00018      0.41      60     104 ..     202     243 ..     195     248 .. 0.73

  Alignments for each domain:
  == domain 1  score: 4.2 bits;  conditional E-value: 0.019
                 EETTTS-EEECHHH.HHS-TTTSSS-EEEEE CS
        HypA  72 rCreCgkefeleek.alrCpkCgsadveivs 101
                 +C +C+ ++    +  ++C +Cg+++v +++
  KOO24421.1 171 TCGTCSGSGVAPGSsVTTCTTCGGRGVVLQQ 201
                 577787666644444679*****99987765 PP

  == domain 2  score: 10.7 bits;  conditional E-value: 0.00018
                 -EEEEEEE--EEEETTTS-EEECHHHHHS-TTTSSS-EEEEESSS CS
        HypA  60 aeLeieevpvkvrCreCgkefeleekalrCpkCgsadveivsGee 104
                  +  + +++ ++rC +Cg ++++ ek   C++C++++++  + ++
  KOO24421.1 202 VNTILGRIQQQARCPTCGGTGQVVEK--YCGSCDGKGTNK-KSKQ 243
                 55556788999**********97755..6*****987653.4555 PP

>> zf-ISL3  zinc-finger of transposase IS204/IS1001/IS1096/IS1165
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.7   0.0      0.39   8.8e+02      17      30 ..     160     173 ..     158     174 .. 0.91
   2 ?    1.9   0.1      0.16   3.6e+02       2      17 ..     186     201 ..     185     208 .. 0.76
   3 ?    4.5   2.0     0.026        57       2      15 ..     212     225 ..     211     242 .. 0.83

  Alignments for each domain:
  == domain 1  score: 0.7 bits;  conditional E-value: 0.39
     zf-ISL3  17 gkkerrvrhlpigg 30 
                 g+k++r+ hl ++g
  KOO24421.1 160 GSKKIRITHLETCG 173
                 789*********98 PP

  == domain 2  score: 1.9 bits;  conditional E-value: 0.16
     zf-ISL3   2 phrCPnCgsktvvkhg 17 
                 +++C +Cg + vv  +
  KOO24421.1 186 VTTCTTCGGRGVVLQQ 201
                 579*****99776555 PP

  == domain 3  score: 4.5 bits;  conditional E-value: 0.026
     zf-ISL3   2 phrCPnCgsktvvk 15 
                 + rCP+Cg + +v+
  KOO24421.1 212 QARCPTCGGTGQVV 225
                 689*****995544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (381 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       656  (0.0365888); expected 358.6 (0.02)
Passed bias filter:                      519  (0.0289475); expected 358.6 (0.02)
Passed Vit filter:                        63  (0.00351386); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.50u 0.26s 00:00:00.76 Elapsed: 00:00:00.41
# Mc/sec: 2782.04
//
Query:       KOO24422.1  [L=368]
Description: NHL repeat containing protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.5e-31  105.0  12.2    2.3e-06   27.4   0.0    6.3  7  NHL         NHL repeat
      2e-05   24.0   0.0    6.5e-05   22.2   0.0    1.7  2  DUF5128     6-bladed beta-propeller
    2.6e-05   23.9   0.0      0.021   14.4   0.0    2.9  3  SGL         SMP-30/Gluconolactonase/LRE-like region
    0.00065   19.1   0.0     0.0019   17.6   0.0    1.7  1  Lactonase   Lactonase, 7-bladed beta-propeller
    0.00079   18.7   0.0     0.0013   18.1   0.0    1.2  1  TolB_like   TolB-like 6-blade propeller-like
     0.0083   16.6   8.0         11    6.7   0.0    5.6  6  PQQ_3       PQQ-like domain
  ------ inclusion threshold ------
      0.021   14.7   0.1      0.049   13.5   0.1    1.7  1  F-box-like  F-box-like
       0.12   11.8   0.0         44    3.5   0.0    3.6  4  LVIVD       LVIVD repeat


Domain annotation for each model (and alignments):
>> NHL  NHL repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.4   0.0      0.62   1.4e+03       1      16 [.      40      55 ..      40      55 .. 0.83
   2 !   23.1   0.4   2.3e-08   5.3e-05       1      27 [.      80     106 ..      80     107 .. 0.94
   3 !    9.4   0.0   0.00051       1.2       1      27 [.     123     148 ..     123     149 .. 0.92
   4 !   22.8   0.3   2.8e-08   6.3e-05       1      28 []     179     205 ..     179     205 .. 0.96
   5 !   27.4   0.0     1e-09   2.3e-06       1      28 []     226     252 ..     226     252 .. 0.95
   6 !   25.2   0.1   4.7e-09   1.1e-05       1      27 [.     279     304 ..     279     305 .. 0.94
   7 ?   -3.4   0.1       5.6   1.3e+04       5      11 ..     323     329 ..     323     332 .. 0.77

  Alignments for each domain:
  == domain 1  score: -0.4 bits;  conditional E-value: 0.62
                BSSEEEEEEETTTEEE CS
         NHL  1 fnyPhGvavdsnGdiy 16
                + +++Gv+ ++ ++++
  KOO24422.1 40 LDRASGVCRSWRDRVL 55
                56899****9999885 PP

  == domain 2  score: 23.1 bits;  conditional E-value: 2.3e-08
                 BSSEEEEEEETTTEEEEEECCCTEEEE CS
         NHL   1 fnyPhGvavdsnGdiyVaDsenhrvqv 27 
                 f +Ph+   ++nG+++VaD+ n+r+q+
  KOO24422.1  80 FDRPHDAIFLPNGHVCVADCDNFRMQI 106
                 7899999999***************97 PP

  == domain 3  score: 9.4 bits;  conditional E-value: 0.00051
                 BSSEEEEEEETTTEEEEEECCCTEEEE CS
         NHL   1 fnyPhGvavdsnGdiyVaDsenhrvqv 27 
                 +++P+G+a+ s++ +yV + + hr+ +
  KOO24422.1 123 TSCPTGLAA-SGDWLYVVEHGAHRLSK 148
                 579******.8*************976 PP

  == domain 4  score: 22.8 bits;  conditional E-value: 2.8e-08
                 BSSEEEEEEETTTEEEEEECCCTEEEEE CS
         NHL   1 fnyPhGvavdsnGdiyVaDsenhrvqvF 28 
                 +++P+Gvav  n ++yV+D +n r+ vF
  KOO24422.1 179 LRHPWGVAV-ANKRVYVTDQGNDRICVF 205
                 789******.7****************9 PP

  == domain 5  score: 27.4 bits;  conditional E-value: 1e-09
                 BSSEEEEEEETTTEEEEEECCCTEEEEE CS
         NHL   1 fnyPhGvavdsnGdiyVaDsenhrvqvF 28 
                 +++P+G+a+ ++ +++VaDs+nhr++v+
  KOO24422.1 226 LREPRGLAI-DGEELFVADSRNHRIVVY 252
                 689******.6***************98 PP

  == domain 6  score: 25.2 bits;  conditional E-value: 4.7e-09
                 BSSEEEEEEETTTEEEEEECCCTEEEE CS
         NHL   1 fnyPhGvavdsnGdiyVaDsenhrvqv 27 
                 f  P+Gv++  nG++yV++  nhrvqv
  KOO24422.1 279 FGLPSGVCI-ANGRLYVTELTNHRVQV 304
                 778******.7***************9 PP

  == domain 7  score: -3.4 bits;  conditional E-value: 5.6
                 EEEEEET CS
         NHL   5 hGvavds 11 
                 +Gv++ds
  KOO24422.1 323 SGVCADS 329
                 5999986 PP

>> DUF5128  6-bladed beta-propeller
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.2   0.0   2.9e-08   6.5e-05      57     129 ..     184     255 ..     176     267 .. 0.92
   2 ?   -1.4   0.0      0.44   9.9e+02      55      78 ..     282     305 ..     275     320 .. 0.80

  Alignments for each domain:
  == domain 1  score: 22.2 bits;  conditional E-value: 2.9e-08
     DUF5128  57 kikvvdkrifvlDsaknnlfvFd.kkGkfvrkIgaqGeGPgEYlqindfiidksnesIyildfmknkiltYdLe 129
                  + v++kr++v+D+ + ++ vF+ +k  f +  g +G G g   +    +id   e++++ d+ +++i++Y+L 
  KOO24422.1 184 GVAVANKRVYVTDQGNDRICVFSaDKLDFLFSFGGRGGGMGQLREPRGLAID--GEELFVADSRNHRIVVYSLA 255
                 57899******************9****************************..777***************95 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 0.44
     DUF5128  55 iskikvvdkrifvlDsaknnlfvF 78 
                 +s ++++++r++v++  + ++ v 
  KOO24422.1 282 PSGVCIANGRLYVTELTNHRVQVL 305
                 67899********99888777665 PP

>> SGL  SMP-30/Gluconolactonase/LRE-like region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.4   0.0    0.0055        12     194     232 ..      91     131 ..      76     141 .. 0.81
   2 ?   -0.3   0.0      0.28   6.3e+02     144     165 ..     188     209 ..     183     212 .. 0.84
   3 !   14.4   0.0   9.3e-06     0.021     143     214 ..     234     310 ..     229     331 .. 0.80

  Alignments for each domain:
  == domain 1  score: 5.4 bits;  conditional E-value: 0.0055
         SGL 194 eGnvwvAvwgggkvvrfdpdGklieeiklp.ak.rvtscaF 232
                 +G+v+vA  ++ + + ++ dG  ++e++l+  + ++t +a 
  KOO24422.1  91 NGHVCVADCDNFRMQIVSRDGYYVGEVRLDgGTsCPTGLAA 131
                 8****************************964446665554 PP

  == domain 2  score: -0.3 bits;  conditional E-value: 0.28
         SGL 144 dgktlYlaDsltrkiwaydvda 165
                 ++k +Y++D  +++i +++ d+
  KOO24422.1 188 ANKRVYVTDQGNDRICVFSADK 209
                 6889999999999999998875 PP

  == domain 3  score: 14.4 bits;  conditional E-value: 9.3e-06
         SGL 143 pdgktlYlaDsltrkiwaydvdae.ggklsnrrvfadlkkge.....gepDGlavDaeGnvwvAvwgggkvvrfdpd.G 214
                  dg+ l++aDs++++i++y++++  +g+++ +r +  ++        g p G+++ a+G+++v+ + +++v++++ d G
  KOO24422.1 234 IDGEELFVADSRNHRIVVYSLAKAaNGEVQPARCYGGGES-StrgrfGLPSGVCI-ANGRLYVTELTNHRVQVLSLDrG 310
                 5999****************98751556666665544444.25999988*99999.89***************998866 PP

>> Lactonase  Lactonase, 7-bladed beta-propeller
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.6   0.0   8.3e-07    0.0019     202     322 ..     133     256 ..      79     268 .. 0.73

  Alignments for each domain:
  == domain 1  score: 17.6 bits;  conditional E-value: 8.3e-07
                 SSEEEEEETTTTEEEEE..EEE-TTTEEEEEEEEESS-TSS-S-...--EEEEEE-TTSSEEEEEETSSTEEEEEEE-TTT--EEEEEEEE-SSS...- CS
   Lactonase 202 gkiaYvvnELsstvsvf..sydeatgaleelqtvstlpegftgk...nsaaeIrlspdgkflyvSnRgadsiavfavdeadgtltlveevstegkf..P 293
                 g+++Yvv+  + ++s +  s  +a+ + ++ ++  ++ ++  g+   +++  ++++  +k +yv + g+d i+vf+ d+ d  +++ ++    g+   P
  KOO24422.1 133 GDWLYVVEHGAHRLSKLrrSCTSAAETTSRAKRWACVGSWGGGDaelRHPWGVAVA--NKRVYVTDQGNDRICVFSADKLDFLFSFGGRGGGMGQLreP 229
                 56666666666666666332223333444444444444432222122355555566..999***************************9999998777* PP

                 -EEEE-TTSSEEEEEETTTTEEEEEEEET CS
   Lactonase 294 Rdfaldpsgklllvanqksdnvtvferda 322
                 R +a+  +g+ l+va+ + ++++v++  +
  KOO24422.1 230 RGLAI--DGEELFVADSRNHRIVVYSLAK 256
                 *****..8999*************99754 PP

>> TolB_like  TolB-like 6-blade propeller-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.1   0.0   5.6e-07    0.0013      18      92 ..     179     252 ..     171     266 .. 0.90

  Alignments for each domain:
  == domain 1  score: 18.1 bits;  conditional E-value: 5.6e-07
   TolB_like  18 mryPfrikvkddilvilDlhgddffyaysypelqfvssfakrGrgpeemlsaeefriskdslwvldkskltaaki 92 
                 +r P+ ++v +  +++ D  +d+ + ++s  +l f+ sf+ rG g +   ++  + i++++l+v+d+ + ++  +
  KOO24422.1 179 LRHPWGVAVANKRVYVTDQGNDR-ICVFSADKLDFLFSFGGRGGGMGQLREPRGLAIDGEELFVADSRNHRIVVY 252
                 799***************99999.889***************************************987776655 PP

>> PQQ_3  PQQ-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.3   0.1     0.055   1.2e+02      16      27 ..     126     139 ..     110     149 .. 0.74
   2 !    6.7   0.0    0.0048        11      16      38 ..     184     207 ..     165     208 .. 0.86
   3 ?    3.8   0.0     0.038        84      15      36 ..     230     252 ..     214     255 .. 0.77
   4 ?    2.2   0.0      0.12   2.7e+02      14      27 ..     282     295 ..     274     308 .. 0.77
   5 ?   -1.7   0.1       2.1   4.7e+03      10      31 ..     319     339 ..     316     340 .. 0.79
   6 ?   -1.8   0.0       2.2     5e+03       4      17 ..     345     357 ..     344     363 .. 0.65

  Alignments for each domain:
  == domain 1  score: 3.3 bits;  conditional E-value: 0.055
       PQQ_3  16 sp..avdgglvyvg 27 
                 ++  a++g+ +yv+
  KOO24422.1 126 PTglAASGDWLYVV 139
                 2255*********8 PP

  == domain 2  score: 6.7 bits;  conditional E-value: 0.0048
       PQQ_3  16 spavdgglvyvgtg.dGtlyAlDa 38 
                 ++av++ +vyv++  + +++ + a
  KOO24422.1 184 GVAVANKRVYVTDQgNDRICVFSA 207
                 56************9999999877 PP

  == domain 3  score: 3.8 bits;  conditional E-value: 0.038
       PQQ_3  15 sspavdgglvyvgtg.dGtlyAl 36 
                 +++a+dg  ++v+++ +++++ +
  KOO24422.1 230 RGLAIDGEELFVADSrNHRIVVY 252
                 456************99999876 PP

  == domain 4  score: 2.2 bits;  conditional E-value: 0.12
       PQQ_3  14 nsspavdgglvyvg 27 
                  s++ +++g++yv+
  KOO24422.1 282 PSGVCIANGRLYVT 295
                 47889*******96 PP

  == domain 5  score: -1.7 bits;  conditional E-value: 2.1
       PQQ_3  10 pgpvnsspavdgglvyvgtgdG 31 
                 +gpv s++ +d  +v +++ dG
  KOO24422.1 319 DGPV-SGVCADSTHVCTTSLDG 339
                 6788.88988889999998887 PP

  == domain 6  score: -1.8 bits;  conditional E-value: 2.2
       PQQ_3   4 lWsvqlpgpvnssp 17 
                 lW+v+   +  ss+
  KOO24422.1 345 LWRVNATPRS-SSM 357
                 8**9887555.666 PP

>> F-box-like  F-box-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.1   2.2e-05     0.049       4      39 ..      17      58 ..      14      60 .. 0.73

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 2.2e-05
  F-box-like  4 LPdE..iLlqIFsyLpps....dLlrlalVCrrWrrvaldtp 39
                LP +   L++++  L+       L r++ VCr+Wr+ +ld +
  KOO24422.1 17 LPLDdnMLVHVLAALNVHhgteALDRASGVCRSWRDRVLDSA 58
                55555589999988874423336999**********999875 PP

>> LVIVD  LVIVD repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.0       1.1   2.6e+03      13      21 ..      93     101 ..      89     102 .. 0.85
   2 ?    2.7   0.0     0.035        78       7      17 ..     129     139 ..     126     143 .. 0.84
   3 ?    3.5   0.0      0.02        44       5      22 ..     183     200 ..     179     204 .. 0.87
   4 ?   -0.0   0.0      0.25   5.6e+02       6      22 ..     231     247 ..     227     251 .. 0.78

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 1.1
       LVIVD  13 YaYvAdqdn 21 
                  ++vAd dn
  KOO24422.1  93 HVCVADCDN 101
                 689***998 PP

  == domain 2  score: 2.7 bits;  conditional E-value: 0.035
       LVIVD   7 vavsGnYaYvA 17 
                 +a sG+++Yv 
  KOO24422.1 129 LAASGDWLYVV 139
                 799*******8 PP

  == domain 3  score: 3.5 bits;  conditional E-value: 0.02
       LVIVD   5 qdvavsGnYaYvAdqdng 22 
                 + vav  + +Yv dq+n+
  KOO24422.1 183 WGVAVANKRVYVTDQGND 200
                 7899999*********97 PP

  == domain 4  score: -0.0 bits;  conditional E-value: 0.25
       LVIVD   6 dvavsGnYaYvAdqdng 22 
                  +a+ G  ++vAd+ n 
  KOO24422.1 231 GLAIDGEELFVADSRNH 247
                 578888889****9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (368 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       307  (0.0171231); expected 358.6 (0.02)
Passed bias filter:                      283  (0.0157845); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.46u 0.29s 00:00:00.75 Elapsed: 00:00:00.43
# Mc/sec: 2542.60
//
Query:       KOO24423.1  [L=199]
Description: hypothetical protein Ctob_006065 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.18   11.9   0.0       0.31   11.1   0.0    1.4  1  DUF1413   Domain of unknown function (DUF1413)


Domain annotation for each model (and alignments):
>> DUF1413  Domain of unknown function (DUF1413)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   1.8e-05      0.31      27      50 ..      11      34 ..       7      43 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 1.8e-05
     DUF1413 27 WnrlskgeRlslGklFlneVkkge 50
                W+++ ++ Rl++G++F   + ++ 
  KOO24423.1 11 WRSFGRTHRLNFGSMFGTRIAMMA 34
                ****************88777665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (199 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       312  (0.017402); expected 358.6 (0.02)
Passed bias filter:                      265  (0.0147805); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.21s 00:00:00.60 Elapsed: 00:00:00.36
# Mc/sec: 1634.65
//
Query:       KOO24424.1  [L=961]
Description: ankyrin repeat protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.1e-12   46.5   0.2    7.5e-05   22.0   0.0    2.6  2  EF-hand_1       EF hand
    8.9e-12   44.7   0.4    7.1e-11   41.8   0.1    2.5  2  EF-hand_8       EF-hand domain pair
    3.7e-10   38.9   0.1    4.2e-06   26.3   0.0    2.8  2  EF-hand_6       EF-hand domain
    7.4e-10   39.3   0.4    5.5e-09   36.5   0.2    2.4  2  Ank_2           Ankyrin repeats (3 copies)
    2.4e-09   37.5   0.0      1e-08   35.5   0.0    2.1  2  EF-hand_7       EF-hand domain pair
    1.7e-08   33.6   0.8    0.00025   20.4   0.2    2.7  2  EF-hand_5       EF hand
    2.3e-08   34.4   0.3    0.00095   19.7   0.0    3.1  3  Ank_4           Ankyrin repeats (many copies)
    3.8e-08   33.5   0.3     0.0019   18.5   0.0    2.9  2  Ank_5           Ankyrin repeats (many copies)
    5.9e-07   29.3   0.2      0.099   13.3   0.0    3.0  2  Ank_3           Ankyrin repeat
    8.8e-06   25.9   3.4    0.00087   19.6   0.1    4.1  4  Ank             Ankyrin repeat
    0.00013   21.3   0.0    0.00024   20.5   0.0    1.3  1  ART             NAD:arginine ADP-ribosyltransferase
    0.00016   21.1   0.0    0.00063   19.1   0.0    2.0  2  ADPrib_exo_Tox  ADP-ribosyltransferase exoenzyme
  ------ inclusion threshold ------
      0.023   14.7   0.0        1.4    8.9   0.0    2.6  2  EF-hand_4       Cytoskeletal-regulatory complex EF hand


Domain annotation for each model (and alignments):
>> EF-hand_1  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.0   0.1   5.4e-08   7.5e-05       2      28 ..      14      40 ..      13      41 .. 0.94
   2 !   22.0   0.0   5.4e-08   7.5e-05       1      25 [.      51      75 ..      51      77 .. 0.91

  Alignments for each domain:
  == domain 1  score: 22.0 bits;  conditional E-value: 5.4e-08
                HHHHHHHHTTTSSSEEEHHHHHHHHHH CS
   EF-hand_1  2 lkeiFrefDkDgdGkIdfeEfkellkk 28
                l+++F+++D Dg G+Id++E+k++l++
  KOO24424.1 14 LRKVFDKIDLDGGGTIDRNELKTALRT 40
                89**********************986 PP

  == domain 2  score: 22.0 bits;  conditional E-value: 5.4e-08
                HHHHHHHHHTTTSSSEEEHHHHHHH CS
   EF-hand_1  1 elkeiFrefDkDgdGkIdfeEfkel 25
                e++ +++++D+Dg+G ++f+Ef ++
  KOO24424.1 51 EVNSMMSIADTDGNGSLNFQEFASI 75
                6899******************876 PP

>> EF-hand_8  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.8   0.1   5.1e-14   7.1e-11       2      49 ..      26      73 ..      17      76 .. 0.95
   2 ?   -0.9   0.0       1.1   1.6e+03      22      34 ..     202     214 ..     188     215 .. 0.83

  Alignments for each domain:
  == domain 1  score: 41.8 bits;  conditional E-value: 5.1e-14
   EF-hand_8  2 kgkItreelrril.rilglkkglseeevdilfrefDtdgdGkisfeEFc 49
                +g I+r el+++l + lg++  +se+ev ++++ +Dtdg+G ++f EF 
  KOO24424.1 26 GGTIDRNELKTALrTQLGKPA-ISESEVNSMMSIADTDGNGSLNFQEFA 73
                799**********99999997.**************************7 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 1.1
   EF-hand_8  22 glseeevdilfre 34 
                 +l +e++d+l+++
  KOO24424.1 202 KLKPEQIDTLLNA 214
                 49********997 PP

>> EF-hand_6  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.3   0.0     3e-09   4.2e-06       1      28 [.      13      40 ..      13      49 .. 0.92
   2 !    9.6   0.0   0.00066      0.91       7      27 ..      57      77 ..      51      79 .. 0.83

  Alignments for each domain:
  == domain 1  score: 26.3 bits;  conditional E-value: 3e-09
   EF-hand_6  1 elreaFklfDkdgdGkidaeElrkalrk 28
                +lr++F+++D dg G+id++El+ alr+
  KOO24424.1 13 KLRKVFDKIDLDGGGTIDRNELKTALRT 40
                599************************7 PP

  == domain 2  score: 9.6 bits;  conditional E-value: 0.00066
   EF-hand_6  7 klfDkdgdGkidaeElrkalr 27
                 + D+dg+G+++++E+ ++ r
  KOO24424.1 57 SIADTDGNGSLNFQEFASIAR 77
                567*************98765 PP

>> Ank_2  Ankyrin repeats (3 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.0       1.6   2.3e+03      25      37 ..     479     491 ..     467     495 .. 0.67
   2 !   36.5   0.2     4e-12   5.5e-09       1      75 [.     832     921 ..     832     928 .. 0.84

  Alignments for each domain:
  == domain 1  score: -0.7 bits;  conditional E-value: 1.6
       Ank_2  25 ngktaLhyAakng 37 
                 + + aLhyA+ +g
  KOO24424.1 479 DREQALHYATAGG 491
                 3456777776655 PP

  == domain 2  score: 36.5 bits;  conditional E-value: 4e-12
       Ank_2   1 LhlAakngnlelvklLl.egadpn...k......ngktaLhyAakngnleivklLleh......adndgrtpLhyAarsghleivklLlek 75 
                 L++Aak++nl + ++L+ +g+d+n   +       g  ++h+A+++g++ ++ lLl++      +d++g+++  +A ++gh + +  Ll++
  KOO24424.1 832 LIWAAKDNNLLVARQLIaNGCDVNeqeSvqdkghSGYAPIHWACQKGHEAMLTLLLDNgaspiaLDKHGNSARSLAEKKGH-KGILSLLDS 921
                 789***98898999999******99761556799**************9999****9888898888***********99**.565556655 PP

>> EF-hand_7  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.5   0.0   7.5e-12     1e-08       3      70 ..      13      76 ..      11      77 .. 0.87
   2 ?   -2.1   0.0       3.9   5.4e+03      38      57 ..     276     295 ..     252     296 .. 0.79

  Alignments for each domain:
  == domain 1  score: 35.5 bits;  conditional E-value: 7.5e-12
   EF-hand_7  3 klkeaFkelDtdgdgyldkeellrllrkifqgagegsk.lsdeelellfkefDtdkdGvisfdEFlkly 70
                kl+ +F+++D dg g +d++el+ +lr        g++ +s+ e+  ++   Dtd++G+++f+EF  + 
  KOO24424.1 13 KLRKVFDKIDLDGGGTIDRNELKTALRT-----QLGKPaISESEVNSMMSIADTDGNGSLNFQEFASIA 76
                7999********************9998.....55555155667*********************9875 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 3.9
   EF-hand_7  38 gsklsdeelellfkefDtdk 57 
                 ++++ ++ + +lfk +D+ +
  KOO24424.1 276 AKDPEKDNVPTLFKSMDLEH 295
                 55667788899999999865 PP

>> EF-hand_5  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.4   0.2   1.8e-07   0.00025       1      23 [.      14      36 ..      14      38 .. 0.93
   2 !   11.0   0.0   0.00017      0.24       4      23 ..      55      74 ..      52      76 .. 0.84

  Alignments for each domain:
  == domain 1  score: 20.4 bits;  conditional E-value: 1.8e-07
                HHHHHHHH-SS-SSCE-HHHHHH CS
   EF-hand_5  1 lkdtFqaiDlNgDGkIskeELkt 23
                l+++F++iDl+g G+I++ ELkt
  KOO24424.1 14 LRKVFDKIDLDGGGTIDRNELKT 36
                789******************98 PP

  == domain 2  score: 11.0 bits;  conditional E-value: 0.00017
                HHHHH-SS-SSCE-HHHHHH CS
   EF-hand_5  4 tFqaiDlNgDGkIskeELkt 23
                + + +D++g G ++++E+  
  KOO24424.1 55 MMSIADTDGNGSLNFQEFAS 74
                66789*************75 PP

>> Ank_4  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.0       5.8     8e+03      36      46 ..     481     491 ..     475     492 .. 0.77
   2 !   11.3   0.0    0.0003      0.41       2      30 ..     829     857 ..     828     866 .. 0.92
   3 !   19.7   0.0   6.9e-07   0.00095       3      47 ..     869     912 ..     867     919 .. 0.80

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 5.8
       Ank_4  36 etalhiAakrg 46 
                 e alh+A  +g
  KOO24424.1 481 EQALHYATAGG 491
                 56999997765 PP

  == domain 2  score: 11.3 bits;  conditional E-value: 0.0003
       Ank_4   2 ltaLhyaaisgrlelvrlLlekgadinaq 30 
                 +++L +aa++++l ++r L+++g d+n+q
  KOO24424.1 829 WKPLIWAAKDNNLLVARQLIANGCDVNEQ 857
                 689************************99 PP

  == domain 3  score: 19.7 bits;  conditional E-value: 6.9e-07
       Ank_4   3 taLhyaaisgrlelvrlLlekgadinaqdnrsGetalhiAakrgn 47 
                  ++h+a+++g++ ++ lLl++ga++ a  ++ G++a   A k+g+
  KOO24424.1 869 APIHWACQKGHEAMLTLLLDNGASPIAL-DKHGNSARSLAEKKGH 912
                 68***********************999.9999988555555555 PP

>> Ank_5  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.3   0.0   5.8e-05      0.08      18      46 ..     830     858 ..     812     859 .. 0.83
   2 !   18.5   0.0   1.4e-06    0.0019       7      56 .]     858     907 ..     855     907 .. 0.91

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 5.8e-05
       Ank_5  18 tpLhvAakygaadvvrlLlargadlnltd 46 
                  pL++Aak +++ v+r L+a+g+d n ++
  KOO24424.1 830 KPLIWAAKDNNLLVARQLIANGCDVNEQE 858
                 8*************************987 PP

  == domain 2  score: 18.5 bits;  conditional E-value: 1.4e-06
       Ank_5   7 advnrldgggntpLhvAakygaadvvrlLlargadlnltdsrGltaldlA 56 
                 ++v+++   g+ p+h+A+ +g+  ++ lLl++ga++ + d++G++a  lA
  KOO24424.1 858 ESVQDKGHSGYAPIHWACQKGHEAMLTLLLDNGASPIALDKHGNSARSLA 907
                 677788888999*********************************98877 PP

>> Ank_3  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.3   0.0   7.2e-05     0.099       3      30 ..     829     855 ..     827     856 .. 0.94
   2 !   13.0   0.0   8.8e-05      0.12       2      29 ..     867     893 ..     866     895 .. 0.91

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 7.2e-05
       Ank_3   3 etpLhlAarsgnleivkfLlenkgadvn 30 
                 + pL +Aa+ +nl +++ L+  +g+dvn
  KOO24424.1 829 WKPLIWAAKDNNLLVARQLIA-NGCDVN 855
                 78*******************.8****9 PP

  == domain 2  score: 13.0 bits;  conditional E-value: 8.8e-05
       Ank_3   2 GetpLhlAarsgnleivkfLlenkgadv 29 
                 G+ p+h+A+  g+ +++ +Ll+ +ga +
  KOO24424.1 867 GYAPIHWACQKGHEAMLTLLLD-NGASP 893
                 788*******************.79865 PP

>> Ank  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.0       4.6   6.4e+03       5      13 ..     483     490 ..     483     501 .. 0.77
   2 ?    3.4   0.0     0.088   1.2e+02       5      30 ..     831     857 ..     831     859 .. 0.87
   3 !   19.6   0.1   6.3e-07   0.00087       2      32 .]     867     898 ..     866     898 .. 0.94
   4 ?    0.2   0.1       0.9   1.2e+03       1      22 [.     899     919 ..     899     930 .. 0.72

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 4.6
                 HHHHHHHHT CS
         Ank   5 PLHlAatng 13 
                 +LH+A   g
  KOO24424.1 483 ALHYAT-AG 490
                 8***64.33 PP

  == domain 2  score: 3.4 bits;  conditional E-value: 0.088
                 HHHHHHHHTTHHHHHHHH.TTTSTTCB CS
         Ank   5 PLHlAatngkkriiklLL.hGAnlnal 30 
                 PL +Aa  +++ +++ L+ +G+++n +
  KOO24424.1 831 PLIWAAKDNNLLVARQLIaNGCDVNEQ 857
                 899999777799******99****965 PP

  == domain 3  score: 19.6 bits;  conditional E-value: 6.3e-07
                 SBBHHHHHHHHTTHHHHHHHH.TTTSTTCBTT CS
         Ank   2 GnTPLHlAatngkkriiklLL.hGAnlnaldn 32 
                 G+ P H+A++ g++ ++ lLL +GA++ ald+
  KOO24424.1 867 GYAPIHWACQKGHEAMLTLLLdNGASPIALDK 898
                 899******************88******995 PP

  == domain 4  score: 0.2 bits;  conditional E-value: 0.9
                 TSBBHHHHHHHHTTHHHHHHHH CS
         Ank   1 dGnTPLHlAatngkkriiklLL 22 
                 +Gn++  lA   g+k i++l L
  KOO24424.1 899 HGNSARSLAEKKGHKGILSL-L 919
                 5999999987889999***5.5 PP

>> ART  NAD:arginine ADP-ribosyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.5   0.0   1.8e-07   0.00024      60     198 ..     375     535 ..     337     551 .. 0.78

  Alignments for each domain:
  == domain 1  score: 20.5 bits;  conditional E-value: 1.8e-07
         ART  60 gfkdehgiAllaYtssselyrelneavreaGrsreeylsn........fdfkalhfyLtraLqlLrkdsqrcsqvyRgvk....glrfsrakkgksvRf 146
                 ++  e+ +A  +Yt+   +y + n+ +r   +s++ yl++        +++++   +  +   +L+k   ++ +v+Rg+k      +f   +    vR 
  KOO24424.1 375 EMIVEELVAGRLYTGP--MYMKYNAVLRA--KSKDPYLHSqwkqlckgNNYATSIHACNSCVLKLSK-LTKAGKVWRGIKdaklPKEFWVPN-AMGVRG 467
                 45667889999***99..**********6..8888887643333444499*****************.99999*******665534444322.236998 PP

         ART 147 g...qFtssslkkkvae..........efgqdtllsiktcl...gvpIkefskfpsedevLIppfevF 198
                 g    F s+ +++++a             +  t+++++  +   g+++  +s++p+e+evL+pp++  
  KOO24424.1 468 GieyGFSSTTTDREQALhyataggagkDGDAMTIFEMQMGMvdrGADLSWLSQYPHEKEVLLPPLTGI 535
                 85567*********999899999998777788*****98865669*******************9865 PP

>> ADPrib_exo_Tox  ADP-ribosyltransferase exoenzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.1   0.0   4.6e-07   0.00063      25     162 ..     385     530 ..     366     537 .. 0.81
   2 ?   -3.2   0.0       3.1   4.3e+03      52      67 ..     646     661 ..     639     664 .. 0.81

  Alignments for each domain:
  == domain 1  score: 19.1 bits;  conditional E-value: 4.6e-07
                     HHHCCTTHHHHHHHHHCTTTSGGGS-S.CHHHHH......HHHHHHHCCT-.B-SS-EEEEEEE-GGGG-HHHHTT-HHHHHHHHHHHTT-EEEE CS
  ADPrib_exo_Tox  25 reYtgsgysdINnyLrqnkgerndldk.selekk......iknldsaleks.ripeniivYRrvdeaelgleldskneekvsefeakvkgkvfke 111
                     r Ytg  y + N  Lr + ++ +  ++ ++l k       i+  +s + k  ++++  +v+R+ + a+l +e+ ++         + +  +   e
      KOO24424.1 385 RLYTGPMYMKYNAVLRAKSKDPYLHSQwKQLCKGnnyatsIHACNSCVLKLsKLTKAGKVWRGIKDAKLPKEFWVP---------NAMGVRGGIE 470
                     7899999999999999999888877667777666777777999999988888999999****99877775544444.........344556788* PP

                     SS-EEEESSSS.......SCCCTTT...SEEEEEEE-TTSBEEE-CCCSSSGCG-EEEE- CS
  ADPrib_exo_Tox 112 rgyvSTslvkd......taasfggr...eilleltvpkgsegayisplslypgeaEvLlp 162
                     +g++ST+  ++      ta + g++     ++e++    + ga++s ls+yp e+EvLlp
      KOO24424.1 471 YGFSSTTTDREqalhyaTAGGAGKDgdaMTIFEMQMGMVDRGADLSWLSQYPHEKEVLLP 530
                     ***********9998876666665587788999999999********************9 PP

  == domain 2  score: -3.2 bits;  conditional E-value: 3.1
                     CHHHHHHHHHHHHCCT CS
  ADPrib_exo_Tox  52 selekkiknldsalek 67 
                      +l +++++ld+al k
      KOO24424.1 646 RTLINEVRRLDAALDK 661
                     679999********98 PP

>> EF-hand_4  Cytoskeletal-regulatory complex EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.7   0.0     0.086   1.2e+02      43      70 ..      12      39 ..       5      43 .. 0.88
   2 ?    8.9   0.0     0.001       1.4      40      70 ..      47      77 ..      40      91 .. 0.86

  Alignments for each domain:
  == domain 1  score: 2.7 bits;  conditional E-value: 0.086
   EF-hand_4 43 dklekiwdladidedgkldfeefciamr 70
                 kl k++d  d+d  g++d +e+  a+r
  KOO24424.1 12 FKLRKVFDKIDLDGGGTIDRNELKTALR 39
                4899******************998887 PP

  == domain 2  score: 8.9 bits;  conditional E-value: 0.001
   EF-hand_4 40 leedklekiwdladidedgkldfeefciamr 70
                ++e++++++ ++ad d +g+l+f+ef+ + r
  KOO24424.1 47 ISESEVNSMMSIADTDGNGSLNFQEFASIAR 77
                678899999*****************98776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (961 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       410  (0.022868); expected 358.6 (0.02)
Passed bias filter:                      363  (0.0202465); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                        13  (0.000725082); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 0.70u 0.26s 00:00:00.96 Elapsed: 00:00:00.42
# Mc/sec: 6814.18
//
Query:       KOO24425.1  [L=305]
Description: ribosome biogenesis protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.3e-47  162.2   0.0    1.7e-47  161.8   0.0    1.1  1  DUF2431          Domain of unknown function (DUF2431)
  ------ inclusion threshold ------
      0.012   15.3   0.0      0.017   14.8   0.0    1.2  1  Methyltr_RsmB-F  16S rRNA methyltransferase RsmB/F


Domain annotation for each model (and alignments):
>> DUF2431  Domain of unknown function (DUF2431)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  161.8   0.0   1.9e-51   1.7e-47       1     168 []      76     241 ..      76     241 .. 0.95

  Alignments for each domain:
  == domain 1  score: 161.8 bits;  conditional E-value: 1.9e-51
     DUF2431   1 LlvGegdfSFarslv...eqhkcenlvaTsydseeellekypqaeenieeLeeegvkvlfgVDatkleksklqeklkkek.fdriifnFPhvggkstdv 95 
                 Ll+GegdfSFa++l        ++nlvaT+yd+e+   +ky   +en+e+++  g +v+f VDat+ +   +++ l++ + fdriifnFPh+g +++d+
  KOO24425.1  76 LLLGEGDFSFAAALSilwG--DSTNLVATVYDDEDVATSKYVGLRENVETVRGVGGTVVFCVDATQCH---THALLRRFGlFDRIIFNFPHAGAGIKDQ 169
                 89************87552..5789*******************************************...4566777778****************** PP

     DUF2431  96 nrqvranqeLlvsffksakellsekpgeilvtlfegepytlwnikdlareaglkvvrsfkFdaeaypgYkhar 168
                 +r+v +nq Ll++ f+++ +ll+++ g++++tl++g+py++w  + +a+  gl+v +  +F++ea+pgY+h+r
  KOO24425.1 170 QRNVATNQSLLRATFTASVQLLAPG-GQMHITLKRGQPYDSWGAVVIAKMCGLRVLSCSTFSPEAFPGYAHRR 241
                 *************************.*********************************************97 PP

>> Methyltr_RsmB-F  16S rRNA methyltransferase RsmB/F
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.8   0.0   1.9e-06     0.017      50     105 ..     118     177 ..      92     191 .. 0.79

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 1.9e-06
                      HHHHHHT.T--SEEEEES-CTCCHHHHCC.....EEEEEEEE--CCGGGTTT-TCHHHH- CS
  Methyltr_RsmB-F  50 aenlkrL.gvtntivleaDarkidkvlgg...elfDriLlDaPCsgtgvirrdpdvklrr 105
                       en++ + gv  t v+++Da++ ++        lfDri+   P +g g+++++++v +++
       KOO24425.1 118 RENVETVrGVGGTVVFCVDATQCHTHALLrrfGLFDRIIFNFPHAGAGIKDQQRNVATNQ 177
                      555554435667799999*999987765556789**********************8877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (305 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       421  (0.0234815); expected 358.6 (0.02)
Passed bias filter:                      331  (0.0184617); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.43u 0.24s 00:00:00.67 Elapsed: 00:00:00.39
# Mc/sec: 2362.15
//
Query:       KOO24426.1  [L=750]
Description: hypothetical protein Ctob_013478 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    5.9e-40  134.1  10.7    2.3e-13   49.5   0.1    4.6  4  TPR_10          Tetratricopeptide repeat
    2.6e-33  114.1   6.0    7.9e-16   58.1   0.2    3.0  2  TPR_12          Tetratricopeptide repeat
      1e-10   40.9   6.1      0.064   13.3   0.1    4.6  4  TPR_7           Tetratricopeptide repeat
    1.9e-10   40.0   5.8     0.0031   17.5   0.1    4.5  4  TPR_2           Tetratricopeptide repeat
    5.8e-10   38.6   0.9       0.01   16.0   0.0    4.0  3  TPR_8           Tetratricopeptide repeat
    8.4e-10   38.1   1.1      0.025   14.4   0.0    4.2  4  TPR_1           Tetratricopeptide repeat
    8.3e-08   32.0   1.5     0.0013   18.2   0.2    2.3  2  TPR_MalT        MalT-like TPR region
      8e-05   22.9   7.9      0.082   13.6   0.1    5.1  4  TPR_4           Tetratricopeptide repeat
    0.00012   22.2   0.2        3.2    8.3   0.0    4.3  4  TPR_17          Tetratricopeptide repeat
    0.00041   20.9  15.8    0.00079   20.0   1.0    5.0  4  TPR_16          Tetratricopeptide repeat
     0.0017   18.8  10.3       0.02   15.4   1.3    3.8  3  TPR_19          Tetratricopeptide repeat
  ------ inclusion threshold ------
      0.032   15.0  20.9       0.75   10.8   0.1    5.9  5  TPR_14          Tetratricopeptide repeat
      0.058   13.6   0.0       0.18   12.0   0.0    1.8  1  Pentapeptide_4  Pentapeptide repeats (9 copies)
       0.11   12.6   0.8        1.4    9.1   0.0    3.4  3  AbiEi_4         Transcriptional regulator, AbiEi antitoxin
       0.68    9.7   2.9        5.3    6.8   0.0    3.0  3  TPR_11          TPR repeat
        3.2    8.6   6.7         22    6.0   0.1    3.7  2  TPR_6           Tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> TPR_10  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   0.3   4.6e-06    0.0052       3      38 ..     568     603 ..     566     606 .. 0.91
   2 !   43.3   0.4   1.9e-14   2.1e-11       1      42 []     608     649 ..     608     649 .. 0.98
   3 !   49.5   0.1   2.1e-16   2.3e-13       1      42 []     650     691 ..     650     691 .. 0.99
   4 !   29.0   0.0     6e-10   6.8e-07       1      42 []     692     733 ..     692     733 .. 0.98

  Alignments for each domain:
  == domain 1  score: 16.6 bits;  conditional E-value: 4.6e-06
      TPR_10   3 sslnNLanalrqrgrydeAealleealairrrllGp 38 
                 +  n+ + +lr+ gr +eA al+ eal++rr  lG+
  KOO24426.1 568 MLINDVGELLRESGRTEEAKALFTEALNARRLELGD 603
                 668999*************************99995 PP

  == domain 2  score: 43.3 bits;  conditional E-value: 1.9e-14
      TPR_10   1 tAsslnNLanalrqrgrydeAealleealairrrllGpdHPd 42 
                 t++s+nNL+ +lr+ grydeA+ lleea ++rr+  G+dHP+
  KOO24426.1 608 TLTSMNNLGLLLREEGRYDEARPLLEEACQARREMQGNDHPE 649
                 89***************************************7 PP

  == domain 3  score: 49.5 bits;  conditional E-value: 2.1e-16
      TPR_10   1 tAsslnNLanalrqrgrydeAealleealairrrllGpdHPd 42 
                 t++s nNL+++l + g++deAe l++eal +rrr+lG+ HPd
  KOO24426.1 650 TLTSINNLGALLKAAGELDEAEPLYIEALKARRRVLGHSHPD 691
                 89***************************************9 PP

  == domain 4  score: 29.0 bits;  conditional E-value: 6e-10
      TPR_10   1 tAsslnNLanalrqrgrydeAealleealairrrllGpdHPd 42 
                 t++s nNLa + ++  r++eA  ll ea +  +++lG+dHP+
  KOO24426.1 692 TLTSINNLASLFQASSRFQEAHTLLVEASREAKKVLGQDHPH 733
                 89***************************************6 PP

>> TPR_12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.1   1.6   1.4e-18   1.6e-15       6      77 .]     569     641 ..     565     641 .. 0.93
   2 !   58.1   0.2     7e-19   7.9e-16       2      72 ..     650     720 ..     645     739 .. 0.96

  Alignments for each domain:
  == domain 1  score: 57.1 bits;  conditional E-value: 1.4e-18
      TPR_12   6 lnn.laavlrrlgrydeAlellekaleiarrllGpdhpltattlrnLgrlyralgryeeAlelleealaiaek 77 
                 l n ++++lr+ gr +eA +l+ +al+++r  lG+  + t+t+++nLg l+r+ gry+eA+ lleea +++++
  KOO24426.1 569 LINdVGELLRESGRTEEAKALFTEALNARRLELGDRDAMTLTSMNNLGLLLREEGRYDEARPLLEEACQARRE 641
                 4444****************************************************************99985 PP

  == domain 2  score: 58.1 bits;  conditional E-value: 7e-19
      TPR_12   2 vatalnnlaavlrrlgrydeAlellekaleiarrllGpdhpltattlrnLgrlyralgryeeAlelleeal 72 
                 ++t+ nnl+a+l ++g++deA+ l+ +al ++rr+lG+ hp+t+t+ +nL+ l++a+ r++eA+ ll ea 
  KOO24426.1 650 TLTSINNLGALLKAAGELDEAEPLYIEALKARRRVLGHSHPDTLTSINNLASLFQASSRFQEAHTLLVEAS 720
                 678899***********************************************************998885 PP

>> TPR_7  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.0   0.1    0.0028       3.1       6      32 ..     574     601 ..     569     605 .. 0.80
   2 !   13.3   0.1   5.7e-05     0.064       2      25 ..     612     635 ..     611     644 .. 0.89
   3 !   12.0   0.1   0.00015      0.16       1      31 [.     653     683 ..     653     688 .. 0.86
   4 !    7.5   0.0    0.0042       4.7       1      24 [.     695     718 ..     695     726 .. 0.84

  Alignments for each domain:
  == domain 1  score: 8.0 bits;  conditional E-value: 0.0028
       TPR_7   6 arlysrlGdyeeAielyeqsL.altkdp 32 
                 ++l ++ G++eeA  l++++L a + + 
  KOO24426.1 574 GELLRESGRTEEAKALFTEALnARRLEL 601
                 8999***************886655555 PP

  == domain 2  score: 13.3 bits;  conditional E-value: 5.7e-05
       TPR_7   2 LlnLarlysrlGdyeeAielyeqs 25 
                  +nL+ l +++G+y+eA  l+e++
  KOO24426.1 612 MNNLGLLLREEGRYDEARPLLEEA 635
                 69*******************994 PP

  == domain 3  score: 12.0 bits;  conditional E-value: 0.00015
       TPR_7   1 aLlnLarlysrlGdyeeAielyeqsLaltkd 31 
                 +++nL+ l  + G+ +eA+ ly ++L  +++
  KOO24426.1 653 SINNLGALLKAAGELDEAEPLYIEALKARRR 683
                 689*********************8866555 PP

  == domain 4  score: 7.5 bits;  conditional E-value: 0.0042
       TPR_7   1 aLlnLarlysrlGdyeeAielyeq 24 
                 +++nLa+l+++  +++eA +l+ +
  KOO24426.1 695 SINNLASLFQASSRFQEAHTLLVE 718
                 689***************777655 PP

>> TPR_2  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.8   0.0   0.00039      0.43       7      29 ..     573     595 ..     569     597 .. 0.91
   2 !   17.5   0.1   2.8e-06    0.0031       4      29 ..     612     637 ..     610     641 .. 0.92
   3 !    9.6   0.3   0.00091         1       5      29 ..     655     679 ..     653     683 .. 0.93
   4 ?    1.1   0.0      0.48   5.4e+02       5      28 ..     697     720 ..     695     725 .. 0.85

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00039
       TPR_2   7 lGlayyklgdyeeAleafekAle 29 
                  G++++++g+ eeA+++f +Al 
  KOO24426.1 573 VGELLRESGRTEEAKALFTEALN 595
                 6999*****************95 PP

  == domain 2  score: 17.5 bits;  conditional E-value: 2.8e-06
       TPR_2   4 lynlGlayyklgdyeeAleafekAle 29 
                  +nlGl++++ g+y+eA+ ++e+A +
  KOO24426.1 612 MNNLGLLLREEGRYDEARPLLEEACQ 637
                 689*********************87 PP

  == domain 3  score: 9.6 bits;  conditional E-value: 0.00091
       TPR_2   5 ynlGlayyklgdyeeAleafekAle 29 
                 +nlG ++ ++g+++eA+ ++ +Al+
  KOO24426.1 655 NNLGALLKAAGELDEAEPLYIEALK 679
                 79*********************98 PP

  == domain 4  score: 1.1 bits;  conditional E-value: 0.48
       TPR_2   5 ynlGlayyklgdyeeAleafekAl 28 
                 +nl+ +  ++ +++eA+ ++ +A 
  KOO24426.1 697 NNLASLFQASSRFQEAHTLLVEAS 720
                 68999999999******9998885 PP

>> TPR_8  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.5   0.0    0.0011       1.2       8      30 ..     574     596 ..     570     598 .. 0.89
   2 !   16.0   0.0     9e-06      0.01       3      32 ..     611     640 ..     609     641 .. 0.91
   3 !    8.8   0.1    0.0018         2       4      31 ..     654     681 ..     651     683 .. 0.91

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 0.0011
                 HHHHHHTT-HHHHHHHHHHHHHH CS
       TPR_8   8 gsiylklgdyeeAkeyyekalel 30 
                 g ++++ g+ eeAk+ + +al +
  KOO24426.1 574 GELLRESGRTEEAKALFTEALNA 596
                 8999****************976 PP

  == domain 2  score: 16.0 bits;  conditional E-value: 9e-06
                 HHHHHHHHHHHTT-HHHHHHHHHHHHHHHH CS
       TPR_8   3 ayynlgsiylklgdyeeAkeyyekaleldp 32 
                 +++nlg+++++ g+y+eA   +e+a+++++
  KOO24426.1 611 SMNNLGLLLREEGRYDEARPLLEEACQARR 640
                 789**********************98765 PP

  == domain 3  score: 8.8 bits;  conditional E-value: 0.0018
                 HHHHHHHHHHTT-HHHHHHHHHHHHHHH CS
       TPR_8   4 yynlgsiylklgdyeeAkeyyekaleld 31 
                  +nlg +++  g+++eA+  y +al+++
  KOO24426.1 654 INNLGALLKAAGELDEAEPLYIEALKAR 681
                 689**********************986 PP

>> TPR_1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.1   0.0     0.039        43       8      28 ..     574     594 ..     571     596 .. 0.92
   2 !   14.4   0.0   2.2e-05     0.025       5      29 ..     613     637 ..     610     641 .. 0.91
   3 !   14.2   0.2   2.6e-05      0.03       5      29 ..     655     679 ..     653     682 .. 0.95
   4 ?   -0.1   0.0      0.87   9.7e+02       5      20 ..     697     712 ..     695     719 .. 0.91

  Alignments for each domain:
  == domain 1  score: 4.1 bits;  conditional E-value: 0.039
                 HHHHHHTT-HHHHHHHHHHHH CS
       TPR_1   8 GnayfklgkydeAleyyekAL 28 
                 G ++++ g+ +eA + + +AL
  KOO24426.1 574 GELLRESGRTEEAKALFTEAL 594
                 7889999*************9 PP

  == domain 2  score: 14.4 bits;  conditional E-value: 2.2e-05
                 HHHHHHHHHTT-HHHHHHHHHHHHH CS
       TPR_1   5 ynlGnayfklgkydeAleyyekALe 29 
                 +nlG+++++ g+ydeA    e+A +
  KOO24426.1 613 NNLGLLLREEGRYDEARPLLEEACQ 637
                 9*****************9999965 PP

  == domain 3  score: 14.2 bits;  conditional E-value: 2.6e-05
                 HHHHHHHHHTT-HHHHHHHHHHHHH CS
       TPR_1   5 ynlGnayfklgkydeAleyyekALe 29 
                 +nlG+++   g++deA+  y +AL+
  KOO24426.1 655 NNLGALLKAAGELDEAEPLYIEALK 679
                 8***********************8 PP

  == domain 4  score: -0.1 bits;  conditional E-value: 0.87
                 HHHHHHHHHTT-HHHH CS
       TPR_1   5 ynlGnayfklgkydeA 20 
                 +nl+ +++   +++eA
  KOO24426.1 697 NNLASLFQASSRFQEA 712
                 8**************9 PP

>> TPR_MalT  MalT-like TPR region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.2   0.2   1.2e-06    0.0013      77     156 ..     564     643 ..     535     649 .. 0.86
   2 !   13.3   0.1   3.6e-05     0.041      75     155 ..     646     726 ..     640     742 .. 0.80

  Alignments for each domain:
  == domain 1  score: 18.2 bits;  conditional E-value: 1.2e-06
    TPR_MalT  77 hvallallqqaeilvaqGrLheAletyeqalqlateqglqqlplvgfllvlladllyEwndLeeAeqhlqeGielleqle 156
                 + + + + +++e+l++ Gr +eA  ++++al   + + + +  +    +  l+ ll+E ++ +eA+  l+e+++  ++++
  KOO24426.1 564 RGTSMLINDVGELLRESGRTEEAKALFTEALNARRLELGDRDAMTLTSMNNLGLLLREEGRYDEARPLLEEACQARREMQ 643
                 4466666799****************************************************************999883 PP

  == domain 2  score: 13.3 bits;  conditional E-value: 3.6e-05
    TPR_MalT  75 slhvallallqqaeilvaqGrLheAletyeqalqlateqglqqlplvgfllvlladllyEwndLeeAeqhlqeGielleql 155
                   + +l+++  ++ +l a G+L+eA+ +y +al+  ++  ++  p        la l+    +++eA++ l e+ + ++++
  KOO24426.1 646 DHPETLTSINNLGALLKAAGELDEAEPLYIEALKARRRVLGHSHPDTLTSINNLASLFQASSRFQEAHTLLVEASREAKKV 726
                 334489999999999999999999999999999999999999999888888899999999999999999998887666554 PP

>> TPR_4  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.4       8.3   9.3e+03      16      25 ..     537     546 ..     534     547 .. 0.74
   2 ?    3.1   0.0      0.18     2e+02       8      23 ..     574     589 ..     574     590 .. 0.89
   3 !   13.6   0.1   7.3e-05     0.082       6      26 .]     614     634 ..     611     634 .. 0.94
   4 !    7.1   0.1    0.0091        10       6      23 ..     656     673 ..     655     674 .. 0.91

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 8.3
       TPR_4  16 dldeAralle 25 
                 + ++A+a+le
  KOO24426.1 537 QIAAAAAALE 546
                 5678888887 PP

  == domain 2  score: 3.1 bits;  conditional E-value: 0.18
       TPR_4   8 ArallalGdldeAral 23 
                 +++l + G+ +eA al
  KOO24426.1 574 GELLRESGRTEEAKAL 589
                 68999********997 PP

  == domain 3  score: 13.6 bits;  conditional E-value: 7.3e-05
       TPR_4   6 aLArallalGdldeAraller 26 
                 +L+ +l + G++deAr lle+
  KOO24426.1 614 NLGLLLREEGRYDEARPLLEE 634
                 89*****************97 PP

  == domain 4  score: 7.1 bits;  conditional E-value: 0.0091
       TPR_4   6 aLArallalGdldeAral 23 
                 +L+ +l a+G+ldeA+ l
  KOO24426.1 656 NLGALLKAAGELDEAEPL 673
                 799************976 PP

>> TPR_17  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.2   0.0       1.1   1.2e+03      19      33 ..     573     587 ..     567     588 .. 0.84
   2 !    8.3   0.0    0.0029       3.2      15      33 ..     611     629 ..     610     629 .. 0.95
   3 ?    6.3   0.0     0.013        14      15      33 ..     653     671 ..     648     671 .. 0.92
   4 ?    0.5   0.0      0.88   9.8e+02      15      33 ..     695     713 ..     689     714 .. 0.87

  Alignments for each domain:
  == domain 1  score: 0.2 bits;  conditional E-value: 1.1
      TPR_17  19 LAelllknGdlmtAr 33 
                  +ell++ G++++A+
  KOO24426.1 573 VGELLRESGRTEEAK 587
                 589**********98 PP

  == domain 2  score: 8.3 bits;  conditional E-value: 0.0029
      TPR_17  15 aynnLAelllknGdlmtAr 33 
                 ++nnL+ ll++ G++++Ar
  KOO24426.1 611 SMNNLGLLLREEGRYDEAR 629
                 79****************7 PP

  == domain 3  score: 6.3 bits;  conditional E-value: 0.013
      TPR_17  15 aynnLAelllknGdlmtAr 33 
                 + nnL+ ll+ +G+l++A+
  KOO24426.1 653 SINNLGALLKAAGELDEAE 671
                 579**************96 PP

  == domain 4  score: 0.5 bits;  conditional E-value: 0.88
      TPR_17  15 aynnLAelllknGdlmtAr 33 
                 + nnLA l+    ++++A+
  KOO24426.1 695 SINNLASLFQASSRFQEAH 713
                 679*******999999996 PP

>> TPR_16  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   1.4         8     9e+03      13      24 ..     538     549 ..     529     557 .. 0.66
   2 !   20.0   1.0     7e-07   0.00079       4      63 ..     574     638 ..     571     641 .. 0.87
   3 !    7.3   0.1    0.0065       7.3       3      27 ..     657     681 ..     646     686 .. 0.75
   4 ?    0.4   0.1      0.92     1e+03       2      25 ..     698     721 ..     697     727 .. 0.82

  Alignments for each domain:
  == domain 1  score: -2.6 bits;  conditional E-value: 8
      TPR_16  13 yddAaaaleaal 24 
                  ++Aaaale +l
  KOO24426.1 538 IAAAAAALESLL 549
                 456666666655 PP

  == domain 2  score: 20.0 bits;  conditional E-value: 7e-07
      TPR_16   4 araalragdyddAaaaleaalkrdpssPd.....aaeAllllgdaalrqgrlaeAaalyraalra 63 
                 + +++++g+ ++A a++++al +++ +       +  ++++lg+++ + gr++eA+ l+++a +a
  KOO24426.1 574 GELLRESGRTEEAKALFTEALNARRLELGdrdamTLTSMNNLGLLLREEGRYDEARPLLEEACQA 638
                 78999************9999888555557888899999********************999755 PP

  == domain 3  score: 7.3 bits;  conditional E-value: 0.0065
      TPR_16   3 laraalragdyddAaaaleaalkrd 27 
                 l+ ++ +ag+ d+A++++ +alk++
  KOO24426.1 657 LGALLKAAGELDEAEPLYIEALKAR 681
                 5666677777888888887777776 PP

  == domain 4  score: 0.4 bits;  conditional E-value: 0.92
      TPR_16   2 alaraalragdyddAaaaleaalk 25 
                 +la ++ ++ ++++A  +l +a +
  KOO24426.1 698 NLASLFQASSRFQEAHTLLVEASR 721
                 6899999*********99966655 PP

>> TPR_19  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.3   1.3     0.025        28       7      55 ..     538     597 ..     534     602 .. 0.67
   2 !   15.4   1.3   1.7e-05      0.02       1      47 [.     619     673 ..     619     683 .. 0.85
   3 ?    5.2   0.4     0.027        30       3      56 ..     663     724 ..     663     729 .. 0.88

  Alignments for each domain:
  == domain 1  score: 5.3 bits;  conditional E-value: 0.025
      TPR_19   7 yaeAlalleqal....qe.......dpknaearllLAeallalgqldeAealLdalpeed 55 
                  a+A+a+le++l    +e       + + + +  +  e+l ++g+++eA+al  +++++ 
  KOO24426.1 538 IAAAAAALESLLvaglAElarlpprERGTSMLINDVGELLRESGRTEEAKALFTEALNAR 597
                 566666666644333322344444445566666677899999*********999988775 PP

  == domain 2  score: 15.4 bits;  conditional E-value: 1.7e-05
      TPR_19   1 llaegdyaeAlalleqalqe........dpknaearllLAeallalgqldeAeal 47 
                 l +eg+y+eA +lle+a q+         p+ +    +L  +l a+g+ldeAe l
  KOO24426.1 619 LREEGRYDEARPLLEEACQArremqgndHPETLTSINNLGALLKAAGELDEAEPL 673
                 679*************988878888777888888888***************966 PP

  == domain 3  score: 5.2 bits;  conditional E-value: 0.027
      TPR_19   3 aegdyaeAlalleqalqe........dpknaearllLAeallalgqldeAealLdalpeedp 56 
                 a+g ++eA +l+ +al++         p+ +    +LA +  a+ +++eA  lL ++ +e++
  KOO24426.1 663 AAGELDEAEPLYIEALKArrrvlghsHPDTLTSINNLASLFQASSRFQEAHTLLVEASREAK 724
                 68999***999999998888888888999999999****************99988877765 PP

>> TPR_14  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.0   0.1         2   2.2e+03      23      43 ..     241     261 ..     239     276 .. 0.86
   2 ?    5.4   0.2     0.035        39       8      28 ..     574     594 ..     569     607 .. 0.89
   3 ?   10.8   0.1   0.00067      0.75       7      30 ..     615     638 ..     614     652 .. 0.84
   4 ?    9.1   0.4    0.0023       2.6       7      30 ..     657     680 ..     656     686 .. 0.91
   5 ?    0.0   0.0       1.9   2.1e+03       7      31 ..     699     723 ..     698     732 .. 0.84

  Alignments for each domain:
  == domain 1  score: -0.0 bits;  conditional E-value: 2
      TPR_14  23 llrralalaPddaeawlllaq 43 
                  ++++++++ ++a+++++la+
  KOO24426.1 241 TFEQLVEAGVEEAAVNIMLAK 261
                 688889999999999999986 PP

  == domain 2  score: 5.4 bits;  conditional E-value: 0.035
      TPR_14   8 aeallalGdpdeAiallrral 28 
                 +e+l+++G+++eA al+ +al
  KOO24426.1 574 GELLRESGRTEEAKALFTEAL 594
                 789**************9998 PP

  == domain 3  score: 10.8 bits;  conditional E-value: 0.00067
      TPR_14   7 laeallalGdpdeAiallrralal 30 
                 l+ +l++ G++deA+ ll++a+++
  KOO24426.1 615 LGLLLREEGRYDEARPLLEEACQA 638
                 678899***************995 PP

  == domain 4  score: 9.1 bits;  conditional E-value: 0.0023
      TPR_14   7 laeallalGdpdeAiallrralal 30 
                 l+++l a+G++deA+ l+ +al++
  KOO24426.1 657 LGALLKAAGELDEAEPLYIEALKA 680
                 78999****************986 PP

  == domain 5  score: 0.0 bits;  conditional E-value: 1.9
      TPR_14   7 laeallalGdpdeAiallrralala 31 
                 la+++ a+ +++eA +ll +a + a
  KOO24426.1 699 LASLFQASSRFQEAHTLLVEASREA 723
                 7889999999****99998887655 PP

>> Pentapeptide_4  Pentapeptide repeats (9 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   0.00016      0.18       7      43 ..     373     409 ..     369     463 .. 0.63

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 0.00016
  Pentapeptide_4   7 sfnncklsnvnFsearlrdcnFtecrlsnvnFdecnl 43 
                     +f +++++++ Fs +++ ++ F+ ++  ++ F+  +l
      KOO24426.1 373 GFTAADFKQAGFSPSDMVEAGFSPAQVRETGFTAKVL 409
                     4455555555555555555555555555555544443 PP

>> AbiEi_4  Transcriptional regulator, AbiEi antitoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.2       3.8   4.3e+03      13      34 ..     178     202 ..     175     203 .. 0.72
   2 ?    9.1   0.0    0.0012       1.4       5      32 ..     271     298 ..     270     301 .. 0.92
   3 ?   -1.4   0.0       2.5   2.8e+03      14      27 ..     374     387 ..     374     401 .. 0.65

  Alignments for each domain:
  == domain 1  score: -2.0 bits;  conditional E-value: 3.8
     AbiEi_4  13 lfttreleaaGispsa...lrrLvr 34 
                 ++ +++++aaG s+ +    +rL r
  KOO24426.1 178 VAARKPAAAAGTSTASrvsANRLQR 202
                 566789999**99944577777765 PP

  == domain 2  score: 9.1 bits;  conditional E-value: 0.0012
     AbiEi_4   5 elasrqvGlfttreleaaGispsalrrL 32 
                 +las +  l+t +e +a+G++p +lr L
  KOO24426.1 271 ALASADPSLVTLAEMIASGVPPVQLRDL 298
                 6899999******************988 PP

  == domain 3  score: -1.4 bits;  conditional E-value: 2.5
     AbiEi_4  14 fttreleaaGisps 27 
                 ft +++++aG sps
  KOO24426.1 374 FTAADFKQAGFSPS 387
                 67777777777765 PP

>> TPR_11  TPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.4   0.0      0.23   2.6e+02       1      22 [.     574     595 ..     574     597 .. 0.86
   2 ?    6.8   0.0    0.0048       5.3       1      22 [.     616     637 ..     616     640 .. 0.91
   3 ?   -0.9   0.2       1.2   1.4e+03       4      22 ..     661     679 ..     658     681 .. 0.82

  Alignments for each domain:
  == domain 1  score: 1.4 bits;  conditional E-value: 0.23
      TPR_11   1 GdayyeqGkyeeAieaYkkAlk 22 
                 G +++e G+ eeA + + +Al+
  KOO24426.1 574 GELLRESGRTEEAKALFTEALN 595
                 7899*********888888875 PP

  == domain 2  score: 6.8 bits;  conditional E-value: 0.0048
      TPR_11   1 GdayyeqGkyeeAieaYkkAlk 22 
                 G +++e G+y+eA   +++A++
  KOO24426.1 616 GLLLREEGRYDEARPLLEEACQ 637
                 7889**********99999997 PP

  == domain 3  score: -0.9 bits;  conditional E-value: 1.2
      TPR_11   4 yyeqGkyeeAieaYkkAlk 22 
                 + + G+++eA   Y +Alk
  KOO24426.1 661 LKAAGELDEAEPLYIEALK 679
                 66789*****999999987 PP

>> TPR_6  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.5   0.1     0.059        66       7      28 ..     574     595 ..     573     597 .. 0.85
   2 ?    6.0   0.1     0.019        22       5      25 ..     614     634 ..     614     638 .. 0.89

  Alignments for each domain:
  == domain 1  score: 4.5 bits;  conditional E-value: 0.059
                 HHHHHHHHHHHHHHHHHHHHHH CS
       TPR_6   7 alsyrklgdtdkAlealerlik 28 
                 ++++r+ g+t++A++++ + ++
  KOO24426.1 574 GELLRESGRTEEAKALFTEALN 595
                 78889977*********98876 PP

  == domain 2  score: 6.0 bits;  conditional E-value: 0.019
                 HHHHHHHHHHHHHHHHHHHHH CS
       TPR_6   5 klalsyrklgdtdkAlealer 25 
                 +l+l++r+ g++d+A+ +le+
  KOO24426.1 614 NLGLLLREEGRYDEARPLLEE 634
                 599*****99******99997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (750 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       624  (0.0348039); expected 358.6 (0.02)
Passed bias filter:                      371  (0.0206927); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                        18  (0.00100396); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              16  [number of targets reported over threshold]
# CPU time: 0.61u 0.23s 00:00:00.84 Elapsed: 00:00:00.39
# Mc/sec: 5777.47
//
Query:       KOO24427.1  [L=215]
Description: loricrin-like protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (215 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       403  (0.0224776); expected 358.6 (0.02)
Passed bias filter:                      189  (0.0105416); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.40u 0.24s 00:00:00.64 Elapsed: 00:00:00.40
# Mc/sec: 1630.35
//
Query:       KOO24428.1  [L=431]
Description: beta-ig-h3 fasciclin [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    4.2e-33  114.3   0.0    7.9e-33  113.4   0.0    1.5  1  Fasciclin      Fasciclin domain
    8.7e-30  102.9   7.2    4.8e-17   62.1   3.1    2.6  2  S1             S1 RNA binding domain
    3.9e-05   23.6   0.1      0.064   13.3   0.1    2.9  2  S1_2           S1 domain
    0.00086   19.2   0.1     0.0048   16.8   0.1    2.4  1  RNase_II_C_S1  RNase II-type exonuclease C-terminal S1 domain
     0.0043   16.9   2.7      0.039   13.8   1.1    2.4  2  CSD            'Cold-shock' DNA-binding domain


Domain annotation for each model (and alignments):
>> Fasciclin  Fasciclin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  113.4   0.0   2.2e-36   7.9e-33       2     128 .]      82     206 ..      81     206 .. 0.96

  Alignments for each domain:
  == domain 1  score: 113.4 bits;  conditional E-value: 2.2e-36
                 GGHHHHHHHHTTTCCCCCTCSSSSEEEEEE-HHHHCCCHHHHHHHHHT..CHHHHHHHHHTTEEESSS-HHHHHHH.HEEEECCTTSSEEEEEEEGGTT CS
   Fasciclin   2 dlstfvsllekaglaeeLnkkdgglTvFaPtneAfaklppellaklln..dkkklkeiLkyHvvpetvsssalkka.setlatllegaklrvniekgng 97 
                  ++t++++l +agl++++ k+ g++TvFaPt++Afaklp+++ ++l +  +k+kl+ iL+yHvv+++v++s ++++  ++++t ++ga++++++   ++
  KOO24428.1  82 SFKTLAAALGAAGLVDTM-KSPGPFTVFAPTDAAFAKLPAGTVEELIKpeNKAKLTGILTYHVVSGKVMASTVVTMdGKKVPT-VNGAEVTIKVG--KE 176
                 699***************.777**********************************************999999996678***.***********..88 PP

                 EEEETTEEEEEEEEEEESSEEEEEESS-TSX CS
   Fasciclin  98 tvtvngkarvvrsdieatngvihvidkvLlp 128
                  v+v+  a v+++die++ngvihvid+v++p
  KOO24428.1 177 GVMVDA-AMVTTTDIECDNGVIHVIDSVIMP 206
                 9*****.**********************98 PP

>> S1  S1 RNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.1   0.1   2.3e-14   8.3e-11       4      60 ..     227     282 ..     225     284 .. 0.96
   2 !   62.1   3.1   1.3e-20   4.8e-17       8      75 .]     284     350 ..     283     350 .. 0.98

  Alignments for each domain:
  == domain 1  score: 42.1 bits;  conditional E-value: 2.3e-14
                 TTCEEEEEEEEEETTEEEEEETTTEEEEEEGGGSSSSCEESCHHHCEETTEEEEEEE CS
          S1   4 kgevveGeVtsvtkgGafVelgngvegfvpaselsrdarvedpdevlkvGdevkvkv 60 
                 +g++v G+++sv+ +GafV++g+  +g++++se+s++  ++d +e+l+ Gd +  kv
  KOO24428.1 227 VGAEVVGKIKSVMSYGAFVDIGASTDGLLHVSEISNE-FIKDATEKLTAGDSITCKV 282
                 6999*********************************.**************99887 PP

  == domain 2  score: 62.1 bits;  conditional E-value: 1.3e-20
                 EEEEEEEEETTEEEEEETTTEEEEEEGGGSSSSCEESCHHHCEETTEEEEEEEEEEETTTTEEEEEEC CS
          S1   8 veGeVtsvtkgGafVelgngvegfvpaselsrdarvedpdevlkvGdevkvkvlkvdkdrrriilsik 75 
                 ++G+V s+t++Gaf+ + +gv+g+v++s++ +   v++ ++vl+vG+ev v+v++vdk++rri ls++
  KOO24428.1 284 ITGKVNSITEFGAFITIKEGVDGLVHISQIQDG-GVKSVGDVLTVGQEVQVRVTNVDKAKRRIGLSMR 350
                 68*****************************99.********************************86 PP

>> S1_2  S1 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.4   0.0    0.0013       4.7       7      38 ..     233     264 ..     227     284 .. 0.87
   2 !   13.3   0.1   1.8e-05     0.064       5      46 ..     284     327 ..     282     333 .. 0.84

  Alignments for each domain:
  == domain 1  score: 7.4 bits;  conditional E-value: 0.0013
        S1_2   7 lkvlretdfgyfLqkdesgevlLpkkevpeel 38 
                  k++   + g+f++ + s++ lL+ +e+ +e+
  KOO24428.1 233 GKIKSVMSYGAFVDIGASTDGLLHVSEISNEF 264
                 68999999*******************99775 PP

  == domain 2  score: 13.3 bits;  conditional E-value: 1.8e-05
        S1_2   5 ntlkvlretdfgyfLqkdesgevlLpkkevp..eeleiGdeveV 46 
                  t kv+ +t+fg+f++ +e+++ l++ ++++      +Gd ++V
  KOO24428.1 284 ITGKVNSITEFGAFITIKEGVDGLVHISQIQdgGVKSVGDVLTV 327
                 689***************************86333347777766 PP

>> RNase_II_C_S1  RNase II-type exonuclease C-terminal S1 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   0.1   1.3e-06    0.0048      30      56 ..     321     347 ..     293     349 .. 0.83

  Alignments for each domain:
  == domain 1  score: 16.8 bits;  conditional E-value: 1.3e-06
  RNase_II_C_S1  30 ggaglplGervrVrLveADvatrrvrF 56 
                     g+ l++G++v+Vr++ +D a+rr+ +
     KOO24428.1 321 VGDVLTVGQEVQVRVTNVDKAKRRIGL 347
                    45579*******************975 PP

>> CSD  'Cold-shock' DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.2   0.0     0.045   1.6e+02      23      48 ..     250     279 ..     231     290 .. 0.72
   2 !   13.8   1.1   1.1e-05     0.039       3      55 ..     286     339 ..     284     344 .. 0.76

  Alignments for each domain:
  == domain 1  score: 2.2 bits;  conditional E-value: 0.045
                 S-EEEEETTTS-STT.....TS--STSEEE CS
         CSD  23 dkdvFvHvsaiqgdg....frsLqegqeVe 48 
                 ++d  +Hvs+i+++      ++L++g++++
  KOO24428.1 250 STDGLLHVSEISNEFikdaTEKLTAGDSIT 279
                 556678*****9988666678888888776 PP

  == domain 2  score: 13.8 bits;  conditional E-value: 1.1e-05
                 EEEEEEETTTTEE.EEEETTSS-EEEEETTTS-STT.TS....--STSEEEEEEEECS CS
         CSD   3 GtVkwfnakkgfG.FItredgdkdvFvHvsaiqgdgfrs....LqegqeVeFevvegk 55 
                 G+V+ + +   fG FIt ++g  d  vH+s+iq+ g++s    L+ gqeV+  v++ +
  KOO24428.1 286 GKVNSITE---FGaFITIKEGV-DGLVHISQIQDGGVKSvgdvLTVGQEVQVRVTNVD 339
                 55555555...9989*999999.999**********7663334889999999988844 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (431 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       423  (0.0235931); expected 358.6 (0.02)
Passed bias filter:                      280  (0.0156172); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.47u 0.26s 00:00:00.73 Elapsed: 00:00:00.40
# Mc/sec: 3203.67
//
Query:       KOO24429.1  [L=539]
Description: sec14 cytosolic factor [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.2e-26   93.3   0.0    1.7e-26   92.9   0.0    1.2  1  CRAL_TRIO       CRAL/TRIO domain
     0.0021   18.2   0.3     0.0044   17.2   0.3    1.5  1  CRAL_TRIO_N     CRAL/TRIO, N-terminal domain
  ------ inclusion threshold ------
       0.02   15.5   0.9      0.037   14.6   0.9    1.3  1  HIP1_clath_bdg  Clathrin-binding domain of Huntingtin-interac


Domain annotation for each model (and alignments):
>> CRAL_TRIO  CRAL/TRIO domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   92.9   0.0   2.8e-30   1.7e-26       2     159 .]     342     513 ..     341     513 .. 0.93

  Alignments for each domain:
  == domain 1  score: 92.9 bits;  conditional E-value: 2.8e-30
   CRAL_TRIO   2 eileggkvgihgrDkegrpvlylrlgrfdpk......klsleelvralvlvlerllkelee......dgqvegvtvviDlkglslskmlwkp.isllkk 87 
                 e+++ ++++ h++Dk+g pv++ rlg  +++       ++ +++++++ +  e+   +  +      ++ v++  +v+Dl+g+ lsk+  k    +++ 
  KOO24429.1 342 EVKKCYHFSHHKTDKNGMPVYFDRLGDLNYSamiaieGSTPDRVLKYFTWYAEATWFYRLPaaslkcGRYVGKGLYVMDLSGFALSKHFTKEtRTFIQA 440
                 678999*************************99999766699***********9988666678888899***********************89999** PP

   CRAL_TRIO  88 ilkilqdnyperlgkilivnaPklfkfafklvkpfldektreKikfvspsntea.tlekyidpeqlpkelGGt 159
                 ++k+ +dnype+++k +i+naP lf++a+ +v+++ld++ + K++++++  +   +l + +d+e +p+++GGt
  KOO24429.1 441 FIKTASDNYPETIYKTYIINAPMLFRTAWAFVSNLLDARQKAKFSILGGPREYLpKLLEVMDKEDIPVQFGGT 513
                 ***********************************************76555445*****************7 PP

>> CRAL_TRIO_N  CRAL/TRIO, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   0.3   7.3e-07    0.0044       3      54 .]     266     308 ..     249     308 .. 0.78

  Alignments for each domain:
  == domain 1  score: 17.2 bits;  conditional E-value: 7.3e-07
  CRAL_TRIO_N   3 dellahlqeseyklteeekfWltredhddaclLRfLRArkwdvekAikrLed 54 
                  +e++a+l ++++  +e+        ++ + + +Rf+ Ar w v+kA  +++d
   KOO24429.1 266 EEFRAELVKEGLM-QEW--------MNNKPTWYRFCQARGWEVAKALVMIKD 308
                  4566666666665.443........66667*******************996 PP

>> HIP1_clath_bdg  Clathrin-binding domain of Huntingtin-interacting protein 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.6   0.9   6.2e-06     0.037      16      64 ..     227     275 ..     219     285 .. 0.90

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 6.2e-06
  HIP1_clath_bdg  16 svarqaqeeverekkeleeelerlkeeaerkleeqkeelekLkreleak 64 
                      ++r a+ ++ + ++ ++ el ++ eea++ +eeq+ ++e++++el ++
      KOO24429.1 227 NSSRDAKGQLSAYQRSMAPELVAVWEEAQNFTEEQNATMEEFRAELVKE 275
                     67899999**************************************875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (539 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       801  (0.0446762); expected 358.6 (0.02)
Passed bias filter:                      557  (0.031067); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.59u 0.27s 00:00:00.86 Elapsed: 00:00:00.45
# Mc/sec: 3633.08
//
Query:       KOO24430.1  [L=497]
Description: cytochrome b5 type b [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.8e-13   49.8   0.0      6e-13   48.7   0.0    1.6  1  Cyt-b5    Cytochrome b5-like Heme/Steroid binding domain


Domain annotation for each model (and alignments):
>> Cyt-b5  Cytochrome b5-like Heme/Steroid binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.7   0.0   3.4e-17     6e-13       2      73 ..     402     474 ..     401     475 .. 0.91

  Alignments for each domain:
  == domain 1  score: 48.7 bits;  conditional E-value: 3.4e-17
                 HHHHTTTECTT.EEEEEETTEEEECTTTCCCSTTCSHHHH.TTTTSBBHHHHHHTTGGCHHHHHHHHGGEEEEE CS
      Cyt-b5   2 leelskhngkn.dlwvairgkVYDvskflskhpGgesail.kyaGkDateafksvvhsekdaekllkkylvGkl 73 
                 ++++ +hn+ +  +wv+++g VYD+  +l  hpGg+++i  ++ + D+t +f+ + h + +   +lk++++G+l
  KOO24430.1 402 WADVVRHNKAGgGCWVTMDGMVYDLEAWLPAHPGGATIIPeQALNVDCTVLFELY-HASRESFTYLKEFYIGEL 474
                 89999***9888***************************7156699*********.888889**********98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (497 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       401  (0.022366); expected 358.6 (0.02)
Passed bias filter:                      352  (0.019633); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.51u 0.26s 00:00:00.77 Elapsed: 00:00:00.42
# Mc/sec: 3572.89
//
Query:       KOO24431.1  [L=161]
Description: hypothetical protein Ctob_007343 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    8.4e-06   25.3   0.0      1e-05   25.0   0.0    1.1  1  PsaD      PsaD
  ------ inclusion threshold ------
        1.1    9.8   4.4        2.4    8.8   3.2    2.1  2  Apelin    APJ endogenous ligand


Domain annotation for each model (and alignments):
>> PsaD  PsaD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.0   0.0   1.2e-09     1e-05      29     113 ..       2      80 ..       1      95 [. 0.84

  Alignments for each domain:
  == domain 1  score: 25.0 bits;  conditional E-value: 1.2e-09
                 EEESS-EEEE-TTSSEEEE-SEEEEEEESSHHHHHHHHHHTGGG...T----EEEEE-TT--EEEEETTTSS-SSS--TT----S CS
        PsaD  29 WtskkeqvfelPtgGaaimreGenllklarkeqclalgtqlrtkfklkiedykiyrvfpnGevqylhPkdGvfpekvneGrekvg 113
                 W s++  v+e   gGa    +G   ++l+ k q+lalg++l  k +    +y +y+  ++G++++l    G fp +vn+  + v+
  KOO24431.1   2 WRSPTPFVYESLYGGADESPAGRQAVRLSTKAQALALGKNLA-KANA-ALTYSLYKFGSEGDMNLL----GSFPKRVNAEGARVR 80 
                 *****************************************9.4434.578*************99....899999986544444 PP

>> Apelin  APJ endogenous ligand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.0      0.54   4.8e+03      35      48 ..      22      30 ..      15      33 .. 0.55
   2 ?    8.8   3.2   0.00026       2.4      34      47 ..      75      88 ..      67      90 .. 0.86

  Alignments for each domain:
  == domain 1  score: -1.8 bits;  conditional E-value: 0.54
      Apelin 35 agrrkfRRqRPRLS 48
                agr     q  RLS
  KOO24431.1 22 AGR-----QAVRLS 30
                444.....445555 PP

  == domain 2  score: 8.8 bits;  conditional E-value: 0.00026
      Apelin 34 qagrrkfRRqRPRL 47
                ++ r +fRR RPRL
  KOO24431.1 75 EGARVRFRRRRPRL 88
                68899********9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (161 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       324  (0.0180713); expected 358.6 (0.02)
Passed bias filter:                      286  (0.0159518); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.36u 0.23s 00:00:00.59 Elapsed: 00:00:00.38
# Mc/sec: 1268.66
//
Query:       KOO24432.1  [L=297]
Description: cysteine proteinases family protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
      2e-23   83.3   0.7    4.6e-23   82.1   0.1    1.8  2  OTU            OTU-like cysteine protease
      6e-06   25.9   0.0     0.0028   17.2   0.0    2.4  2  Peptidase_C65  Peptidase C65 Otubain


Domain annotation for each model (and alignments):
>> OTU  OTU-like cysteine protease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.1      0.27   2.5e+03      21      45 ..      66      90 ..      36     104 .. 0.74
   2 !   82.1   0.1   5.2e-27   4.6e-23       2     127 .]     173     291 ..     172     291 .. 0.94

  Alignments for each domain:
  == domain 1  score: -1.1 bits;  conditional E-value: 0.27
                HCCHHHHHHHHHCHHHHHHTSSHHC CS
         OTU 21 elrkakvseLreklaeylrehseel 45
                e +++ ++eL ++lae    h++el
  KOO24432.1 66 EAKQKADEELEKALAEMSVRHAQEL 90
                4556667777777777766776665 PP

  == domain 2  score: 82.1 bits;  conditional E-value: 5.2e-27
                 -SS-HHHHHHHHCCCSS.SHCCHHHHHHHHHCHHHHHHTSSHHCCHHHHCCHHH...HHHHTTSTTHHHHHHHHHHHHHHCTS-EEEETTSSSSEEEE- CS
         OTU   2 gDGnCLlravsqqlwgvsdelrkakvseLreklaeylrehseelelfleeeeeg...ylkeiektaawggeleifalahiLrrpIiVlksesgeelvgl 97 
                 +DG+CL+r+ ++ql      ++ +++ + r   a y+r+h +++e++lee  +    y++ +e+ ++wgg+lei alah  +r+++V++++ +  ++g 
  KOO24432.1 173 ADGHCLYRSLAHQLQ---AGGEPIDFTQCRADIAAYMRKHPHDFEPYLEEGCTDfgaYCETVEHSSEWGGQLEIAALAHARKRKVTVYSADAPALTAG- 267
                 7*************4...6899999************************99777899******************************99999998888. PP

                 TT-EEE--TTS-GGGS-SS-EEEEEETTEE CS
         OTU  98 kfegvylplekdkslclkypihlyylgeHy 127
                 +++       +++++ l++++h ++lg+Hy
  KOO24432.1 268 EEYD------DESPILLAFHRHYFGLGAHY 291
                 5555......8******************9 PP

>> Peptidase_C65  Peptidase C65 Otubain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.1   0.0   0.00075       6.7      45      59 ..     171     185 ..     167     188 .. 0.83
   2 !   17.2   0.0   3.1e-07    0.0028     146     204 ..     202     260 ..     196     280 .. 0.87

  Alignments for each domain:
  == domain 1  score: 6.1 bits;  conditional E-value: 0.00075
                    B--SSTHHHHHHHHH CS
  Peptidase_C65  45 vrgDGnCfyRaflfs 59 
                    +  DG+C+yR+++ +
     KOO24432.1 171 IAADGHCLYRSLAHQ 185
                    679********9865 PP

  == domain 2  score: 17.2 bits;  conditional E-value: 3.1e-07
                    HHHHHHHTHHHHGGGS-TT.--HHHHHHHHTSSTT--B-HHHHHHHHHHTT--EEEEESS CS
  Peptidase_C65 146 tsaelkthadeyepFldel.stveeFceqevepvnkEaDnvqitaLaealgvkvrVeyld 204
                    + a++++h  ++ep+l+e+ ++  ++ce+ ve  ++   +++i+aLa+a + kv V+  d
     KOO24432.1 202 IAAYMRKHPHDFEPYLEEGcTDFGAYCET-VEHSSEWGGQLEIAALAHARKRKVTVYSAD 260
                    5789***************99******97.6*************************9888 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (297 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1582  (0.0882369); expected 358.6 (0.02)
Passed bias filter:                      660  (0.0368119); expected 358.6 (0.02)
Passed Vit filter:                        72  (0.00401584); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.54u 0.27s 00:00:00.81 Elapsed: 00:00:00.42
# Mc/sec: 2121.38
//
Query:       KOO24433.1  [L=233]
Description: hypothetical protein Ctob_007346 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    3.3e-09   36.5   0.0    4.4e-09   36.1   0.0    1.1  1  Pkinase      Protein kinase domain
    0.00024   20.5   0.0     0.0029   16.9   0.0    2.0  1  Pkinase_Tyr  Protein tyrosine kinase


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.1   0.0   4.9e-13   4.4e-09       3      91 ..      80     190 ..      78     201 .. 0.92

  Alignments for each domain:
  == domain 1  score: 36.1 bits;  conditional E-value: 4.9e-13
                 EEEEEEEESSEEEEEEEETTTTEEEEEEEEECHCHCHHHHHHHHHHHHHHHHHS...CTTB--EEEEEEE......................SSEEEEE CS
     Pkinase   3 kleklGeGsfGkVykaveketgkivAvKkikkekakkkkekkvlrEikilkklk...hpnivrlyevfee......................kdelylv 76 
                   +klG G++G V+ +++  tg++vA+K+i   ++k    +++ rE+++l++l+   hp ++++   ++                       +++ +lv
  KOO24433.1  80 SSRKLGLGAYGAVLAGTDLCTGEQVAIKIIPDGRMKP---SNLEREVAMLRRLSdtrHPGLCHFHAHIRPeeakageikvedssttpltnplHHYHFLV 175
                 579*****************************99998...5589*********9999***********999*******************9999999** PP

                 EE--TTEBHHHHHHH CS
     Pkinase  77 leyveggeladller 91 
                 +e ++ggel++++ +
  KOO24433.1 176 MEACRGGELFEFVIK 190
                 **********98864 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   0.0   3.3e-07    0.0029       4      95 ..      81     191 ..      78     213 .. 0.76

  Alignments for each domain:
  == domain 1  score: 16.9 bits;  conditional E-value: 3.3e-07
                  EEEEEEESSEEEEEEEEETTTTSSEEEEEEEEESTTSSHHHHHHHHHHHHHHHTS...-BTTB--EEEEEESSSS......................E CS
  Pkinase_Tyr   4 gkklGeGafGkVvegtlkgekekkevkVavKtlkeeateeekeelleeakimkkl...khpnivkllgvctkeep......................l 76 
                  ++klG Ga+G V  gt       + ++Va+K++ ++ ++   ++l +e++++++l   +hp + ++++ +  ee                       +
   KOO24433.1  81 SRKLGLGAYGAVLAGTDL----CTGEQVAIKIIPDGRMKP--SNLEREVAMLRRLsdtRHPGLCHFHAHIRPEEAkageikvedssttpltnplhhyH 172
                  789************998....7899*******9988887..67788888877665448999999999888333334556666666677777777777 PP

                  EEEEE--TTEBHHHHHHHT CS
  Pkinase_Tyr  77 livteyvkgGdLlkfLrkk 95 
                  ++v+e ++gG+L +f+ kk
   KOO24433.1 173 FLVMEACRGGELFEFVIKK 191
                  7777777777777776665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (233 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       363  (0.0202465); expected 358.6 (0.02)
Passed bias filter:                      272  (0.015171); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.41u 0.26s 00:00:00.67 Elapsed: 00:00:00.41
# Mc/sec: 1701.76
//
Query:       KOO24434.1  [L=1167]
Description: adenosine 3 -phospho 5 -phosphosulfate transporter 1-like protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    7.5e-42  143.6  17.8    7.5e-42  143.6  17.8    2.3  2  UAA       UAA transporter family
  ------ inclusion threshold ------
       0.27   10.5  27.8      0.035   13.4   3.9    2.6  2  TPT       Triose-phosphate Transporter family


Domain annotation for each model (and alignments):
>> UAA  UAA transporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  143.6  17.8   8.3e-46   7.5e-42       2     296 ..     441     749 ..     440     755 .. 0.91
   2 !    2.2   3.0    0.0092        82     121     168 ..     948     993 ..     820    1098 .. 0.79

  Alignments for each domain:
  == domain 1  score: 143.6 bits;  conditional E-value: 8.3e-46
         UAA   2 lllavslvfvgccsnvvllElivkeepkafg..........nlltfvq.....flfvalegllesidi......lkkrkiPlktYvilvalffitsvln 79 
                 lll++ +v++ +++++v +E+++++++ + +          n+ltfv+     +l++ l gl++          + ++++++++Y+i   +++i+sv++
  KOO24434.1 441 LLLCAFGVVGIFMIYGVYQESVMTRTYYNAAhpkgerftgvNMLTFVNrlfavMLALVLLGLVQVCCSpgpaneQWQKRASIWEYAIGGYTNTISSVCQ 539
                 589999********************9775689***************775555555555554433315556669999********************* PP

         UAA  80 nealkydisvPvhiifrssklipvmilGililgkrYsllqylsvllltlGviiftllsakdkkedskeslnkfllGiallvlallldavlglvqeklyk 178
                 + ++ + is+Pv ++ +++k+ +vm++    +g++Y l++ ++ l++ +G+ +f l++    ++++    ++++ G++l+++ l++da+++++q +++k
  KOO24434.1 540 YGSIHF-ISFPVLVLSKACKMPTVMLANFACYGQQYVLFDWMASLVVLMGALLFLLYDGDAAHKHEGHIIENNVGGLVLVIIFLAADAYTSTWQSATFK 637
                 ******.*************************************************99888888888888999************************** PP

         UAA 179 kygkhskealfyshllslplfl...llqgellsavkflsesedvallslpsklfylllnvltqyvcikgVlilisefgaltvtlvltlRKfvslllSil 274
                 k       +++   +++  + l   + ++el++ + f+s+++ +         + ++++++t++v++ ++li+i++fg lt++   t+R++vs +lSi+
  KOO24434.1 638 K-DTAILPMMLLLSVWGAFFSLvglISSDELVETIGFFSRNPAII--------IEAVVLSITSAVGQLFILITIRRFGPLTFAALATVRQLVSAILSII 727
                 5.4455589999999**9999999999****************99........8********************************************* PP

         UAA 275 lFknpltlqhlvgtllVflgll 296
                 +F++ + + ++vg +l f +l 
  KOO24434.1 728 IFNHLIHMLQIVGLMLTFAALG 749
                 ******************9986 PP

  == domain 2  score: 2.2 bits;  conditional E-value: 0.0092
         UAA 121 lsvllltlGviiftllsakdkkedskeslnkfllGiallvlallldav 168
                   v ++++G++++tl +++   ++   ++n++ lG++ +++a ll+++
  KOO24434.1 948 FFVCVIAAGASVATLTHMAV--NQPLDKYNDQALGMVAMIVASLLSGC 993
                 44677899*******66643..4557899999*****99999999875 PP

>> TPT  Triose-phosphate Transporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   3.9   3.9e-06     0.035     185     283 ..     651     745 ..     628     751 .. 0.74
   2 ?    2.1  16.0     0.012     1e+02      33     276 ..     858    1108 ..     823    1119 .. 0.79

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 3.9e-06
         TPT 185 ilslllllPvallvegvlktpsllkstk.vs.lkevllllllsgvlfhlynqvaymvLervspvthsvantvKrvvvIvlsvlvfknpvsllnaiGtav 281
                 + +++++l  ++  ++      l+++   +s + +++++ ++ ++   + +     ++ r  p+t++   tv++ v+ +ls+++f+  +++l+++G ++
  KOO24434.1 651 VWGAFFSLVGLISSDE------LVETIGfFSrNPAIIIEAVVLSITSAVGQLFILITIRRFGPLTFAALATVRQLVSAILSIIIFNHLIHMLQIVGLML 743
                 3333333333333333......33333223335888888888888888999999999***************************************998 PP

         TPT 282 ai 283
                 + 
  KOO24434.1 744 TF 745
                 75 PP

  == domain 2  score: 2.1 bits;  conditional E-value: 0.012
         TPT   33 tvsavqllvgsvlilvlwalglkkrpkisseflkailplalvktlghvlavvslskvaVSfthtvKasePiFtvilsrlllgeklsllvylsLlpiv 129 
                    sav+ +++++++++l++++ +  + i  + ++   +++lv ++   l++v++s       + + a++P+Ft ++ + l  e  +  ++  + +i 
  KOO24434.1  858 AYSAVSSACTILWLMFLFMVQPTCFQPIPRPSWAIFGVIGLVSVADLALTNVAISILDPPQQQCLAALAPVFTFVVESTLKLEFKQPIIVFFVCVIA 954 
                  567788889999999999999999999999999999999999999999999999999999*************888777666666666677788899 PP

         TPT  130 gGvalasvtElsFn.........ligfisAlisnltfslrnifsKkllkk.lkdldalnlfaiitilslllllPvallvegvlktpsllkstk.vsl 215 
                  +G ++a++t +  n          +g+++ +++ l + ++ ++ +    + + +++ +  ++ + ++ +l+l+P+++ + ++l+ ++ ++ +  +  
  KOO24434.1  955 AGASVATLTHMAVNqpldkyndqALGMVAMIVASLLSGCKLVLLRASSMTfRTQMSPIATLFWVDTMVFLVLTPLSIGLGEMLTLVDAITLGPpILS 1051
                  *********9987633333334368999999999999999998776544425559999*******************99887777777777743445 PP

         TPT  216 kevllllllsgvlfhlynqvaymvLervspvthsvantvKrvvvIvlsvlvfknpvsllna 276 
                    v ++  l gv f l +  a   L+ +++v  s+ nt   ++ + l  ++f   v+   +
  KOO24434.1 1052 VGVAFTGALGGVRF-LSELYA---LQYMQAVDLSIVNTFAAICYVLLCFVIFPSDVHHSGV 1108
                  66777777777665.444444...5555667788999998888888888888888876655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1167 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       896  (0.0499749); expected 358.6 (0.02)
Passed bias filter:                      357  (0.0199119); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.79u 0.25s 00:00:01.04 Elapsed: 00:00:00.45
# Mc/sec: 7814.48
//
Query:       KOO24435.1  [L=2523]
Description: c2 domain containing protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    7.8e-62  206.0   0.0    5.8e-14   52.2   0.1    9.8  9  C2        C2 domain
     0.0007   19.6   0.0     0.0019   18.2   0.0    1.7  1  FerI      FerI (NUC094) domain
     0.0071   16.3   0.0       0.02   14.8   0.0    1.7  1  Ferlin_C  Ferlin C-terminus


Domain annotation for each model (and alignments):
>> C2  C2 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.7   0.0   1.3e-12   7.9e-09       1      83 [.     105     192 ..     105     210 .. 0.81
   2 !   52.2   0.1   9.7e-18   5.8e-14       2     100 ..     335     443 ..     334     446 .. 0.85
   3 !   39.6   0.0   8.3e-14   4.9e-10       3      95 ..     511     615 ..     510     623 .. 0.80
   4 !   15.1   0.0   3.7e-06     0.022       2      56 ..     937    1010 ..     936    1016 .. 0.90
   5 !    4.7   0.0     0.006        36      61      90 ..    1141    1174 ..    1127    1194 .. 0.81
   6 ?   -1.7   0.0      0.62   3.7e+03       3      31 ..    1289    1340 ..    1287    1354 .. 0.57
   7 ?    3.0   0.0      0.02   1.2e+02      34      96 ..    1373    1442 ..    1359    1446 .. 0.77
   8 !    9.3   0.0   0.00023       1.4      51      90 ..    1878    1917 ..    1847    1927 .. 0.65
   9 !   27.0   0.0   7.2e-10   4.3e-06       3      90 ..    1981    2087 ..    1979    2101 .. 0.86

  Alignments for each domain:
  == domain 1  score: 35.7 bits;  conditional E-value: 1.3e-12
                 TEEEEEEEEEESSSSSST.TSSCEEEEEEEE...ECEEEEEE-SCSSSSSSEEEEEEEE.EESC.HTTSEEEEEEEEECSSSTEEEEEE CS
          C2   1 gklevtvieAknLpnkdk.kgssdpyvkvsl...dgkqkakTrviknslnPvWnekftf.evae.leeakLeveVfdndrlskddfiGk 83 
                 g+l + v +Ak+L++ +  +++sdpyvkv++   ++   +kT+   ++l P+W+e+++f +v+   e  ++e+ V+d +  s d+   +
  KOO24435.1 105 GQLLIGVRSAKDLAAVNSsGRTSDPYVKVTVytpSQVLEKKTTPRMRTLAPEWEEELSFgNVYGdGELPMVELAVYDAEP-SFDKRFAV 192
                 68999********888665778**********9878888888867999***********878778999*********888.55554444 PP

  == domain 2  score: 52.2 bits;  conditional E-value: 9.7e-18
                 EEEEEEEEEESSSSSSTTSSCEEEEEEEEECEEEEEE-SCSSSSSSEEEEEEEEEESC.....HTTSEEEEEEEEECS...SSTEEEEEEEEEEGHH.. CS
          C2   2 klevtvieAknLpnkdkkgssdpyvkvsldgkqkakTrviknslnPvWnekftfevae.....leeakLeveVfdndr...lskddfiGkveiplst.. 90 
                 +l+v+vieA++L+ +d +g+sdpyv+v    +q + T+v +  ++P+W+e++ ++  +      +++++ev+V+d+d    ++ +++iG++ ++ st  
  KOO24435.1 335 QLHVHVIEARELAGRDWNGTSDPYVTVRW-LDQSRSTTVRNAVTSPIWDEHLFVQHLDleksqVHQSHIEVSVYDEDEvagIKTSELIGQFFLDASTly 432
                 79***************************.999999995555577******999776678898999***********977667888**********966 PP

                 .HHTTHHHHEE CS
          C2  91 .llsgeeaegw 100
                   +++e +++w
  KOO24435.1 433 yRKDHELYRQW 443
                 66666666676 PP

  == domain 3  score: 39.6 bits;  conditional E-value: 8.3e-14
                 EEEEEEEEESSSSSST.........TSSCEEEEEEEEECEEEEEE-SCSSSSSSEEEEEEEEEESC.HTTSEEEEEEEEECSSSTEEEEEEEEEEGHH. CS
          C2   3 levtvieAknLpnkdk.........kgssdpyvkvsldgkqkakTrviknslnPvWnekftfevae.leeakLeveVfdndrlskddfiGkveiplst. 90 
                 ++v +++A +Lp+ d            s+dpyv+v l g +k +T+vik+++ PvW+ +f +++     ++kL+++++d++  +++  + + ++ l+  
  KOO24435.1 511 VRVAIHSAYGLPKVDSstldklydkRASIDPYVQVRL-GGEKLRTKVIKTNTMPVWHVEFWMPLLMpTVDTKLKLKLKDYNFGQSHRTLQEWTVALDPv 608
                 5899**********65444444444777*********.**********99989*******9988777899*********99988888998888888884 PP

                 ..HHTTH CS
          C2  91 ..llsge 95 
                    + g+
  KOO24435.1 609 lrAEPGA 615
                 4444444 PP

  == domain 4  score: 15.1 bits;  conditional E-value: 3.7e-06
                  EEEEEEEEEESSSSSSTTSSCEEEEEEEE...................ECEEEEEE-SCSSSSSSEEEEEEEEE CS
          C2    2 klevtvieAknLpnkdkkgssdpyvkvsl...................dgkqkakTrviknslnPvWnekftfe 56  
                   l+v+ + A++Lp++d +g  dpy ++sl                   +   + +T++ + +  P W e++t++
  KOO24435.1  937 ELRVHAYMARDLPARDENGALDPYLVASLagiearavpighsgteraaSAPLRSQTQTLPATAFPSWFETLTLP 1010
                  599**************************999999999999999998888888999989999779999998875 PP

  == domain 5  score: 4.7 bits;  conditional E-value: 0.006
                  TTSEEEEEEEEECS....SSTEEEEEEEEEEGHH CS
          C2   61 eeakLeveVfdndr....lskddfiGkveiplst 90  
                   + ++ ++V+d+d      + d+f+G+v +pl+ 
  KOO24435.1 1141 LAPEVILSVWDSDEgtltSEPDEFVGRVCVPLRA 1174
                  567899*****999888667888********987 PP

  == domain 6  score: -1.7 bits;  conditional E-value: 0.62
                  EEEEEEEEESSSSSST............TSSCEEEEEEEE...........E CS
          C2    3 levtvieAknLpnkdk............kgssdpyvkvsl...........d 31  
                  ++v v++ ++L                 ++ s+p+v+++            +
  KOO24435.1 1289 VTVVVLSLQGLRSSTLklprwlsknafiESPSKPFVELDAgkqphfvkarsQ 1340
                  6777888888866633344444434444555889998888643333333334 PP

  == domain 7  score: 3.0 bits;  conditional E-value: 0.02
                  EEEEE-SC..SSSSSSEEEEEEEEEESC....HTTSEEEEEEEEECSS.STEEEEEEEEEEGHHHHTTHH CS
          C2   34 qkakTrvi..knslnPvWnekftfevae....leeakLeveVfdndrl.skddfiGkveiplstllsgee 96  
                  ++++Tr    ++ l Pv+ e +++ ++     l   ++ v+V+d +       ++G + i+l++ +sg+e
  KOO24435.1 1373 SVRRTRSSdqPSPLAPVFFEVLKLRLKLptnhLFMPTVNVRVYDTQFGgLYTPMLGYTGIDLRDYMSGSE 1442
                  578888554456699***9888887666667799**********77642455599999999999777665 PP

  == domain 8  score: 9.3 bits;  conditional E-value: 0.00023
                  EEEEEEESCHTTSEEEEEEEEECSSSTEEEEEEEEEEGHH CS
          C2   51 ekftfevaeleeakLeveVfdndrlskddfiGkveiplst 90  
                  + f+f  + + +++L+v V+d++ l +d +iG +ei++++
  KOO24435.1 1878 QAFEFTATLPGATVLCVDVMDKNFLWEDVLIGGTEIDIED 1917
                  4556655556677777777777777777777777777766 PP

  == domain 9  score: 27.0 bits;  conditional E-value: 7.2e-10
                  EEEEEEEEESSSSS.STTSSCEEEEEEEE........ECEEEEEE-SC..SSSSSSEEEEEEEEEESC.........HTTSEEEEEEEEECSSSTEE CS
          C2    3 levtvieAknLpnk.dkkgssdpyvkvsl........dgkqkakTrvi..knslnPvWnekftfevae.........leeakLeveVfdndrlskdd 79  
                  +++ + +A+++p+  d +g sd yv +++        ++  + +T+++   ++ +  Wn +++f+v+          +++++L+++++d+d+ s +d
  KOO24435.1 1981 MRLIIWSARDVPRDlDDSGLSDLYVAAQYddpyskkkARGMVLRTDTHfrASKGKASWNWRMRFPVELrytdrslsrDKRHMLRLKLWDWDV-SLND 2076
                  678899*****776588***************998888888999998764333589********99989999****99**************.**** PP

                  EEEEEEEEGHH CS
          C2   80 fiGkveiplst 90  
                  + G+++++ls+
  KOO24435.1 2077 LAGETSLDLSE 2087
                  *********98 PP

>> FerI  FerI (NUC094) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.2   0.0   3.2e-07    0.0019       9      46 ..     464     498 ..     460     504 .. 0.74

  Alignments for each domain:
  == domain 1  score: 18.2 bits;  conditional E-value: 3.2e-07
        FerI   9 gvkGYlKvdivVlgkGDevpnnpeektddqdddIEkNL 46 
                 g  GYlK +++  g+GD++pn  ee +d   +  E+  
  KOO24435.1 464 GQAGYLKLSLTLSGPGDTPPNHDEEAED---EEGESVP 498
                 778*****************76555544...4455555 PP

>> Ferlin_C  Ferlin C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.0   3.4e-06      0.02      65     147 ..    2402    2481 ..    2392    2488 .. 0.82

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 3.4e-06
    Ferlin_C   65 gkveaelelltkeeAekepvGkgrkepeplekpnrpktsfswlvnrlKtfiffiWkkykkyiiallilallalflvlllytlP 147 
                  g++ + ++l+  +eA+  p+G+gr++p++ +k  rp   + + +n++  +  f+  k   y+++ l  alla +l++  y +P
  KOO24435.1 2402 GQLLISVQLVPAAEAKLYPAGNGRSAPNQHPKLPRPVGRLRFTLNPFALVHQFLGDKLCAYLVCAL--ALLACVLIA-YYMIP 2481
                  7778899***********************************************999999988654..344444332.34444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (2523 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       795  (0.0443416); expected 358.6 (0.02)
Passed bias filter:                      547  (0.0305092); expected 358.6 (0.02)
Passed Vit filter:                        49  (0.002733); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 1.28u 0.30s 00:00:01.58 Elapsed: 00:00:00.48
# Mc/sec: 15671.89
//
Query:       KOO24436.1  [L=333]
Description: hypothetical protein Ctob_007347 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.6e-06   26.3   1.5      0.012   15.8   0.2    3.1  2  DUF2475   Protein of unknown function (DUF2475)


Domain annotation for each model (and alignments):
>> DUF2475  Protein of unknown function (DUF2475)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.2   6.7e-07     0.012       4      32 ..     214     243 ..     213     260 .. 0.83
   2 !    8.2   0.1   0.00016       2.9       4      14 ..     274     284 ..     272     306 .. 0.85

  Alignments for each domain:
  == domain 1  score: 15.8 bits;  conditional E-value: 6.7e-07
     DUF2475   4 lmPGYrGyvPqvkysfGdtY.Gnttaklfq 32 
                  +PGY G+vP++ +++G ++ G  ta  f+
  KOO24436.1 214 VVPGYGGHVPNAPTHCGTSHvGGVTAAHFE 243
                 69****************985666666665 PP

  == domain 2  score: 8.2 bits;  conditional E-value: 0.00016
     DUF2475   4 lmPGYrGyvPq 14 
                  +PGY+G+ P 
  KOO24436.1 274 SIPGYKGHLPG 284
                 59********7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (333 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       366  (0.0204139); expected 358.6 (0.02)
Passed bias filter:                      206  (0.0114898); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.24s 00:00:00.70 Elapsed: 00:00:00.43
# Mc/sec: 2326.34
//
Query:       KOO24437.1  [L=334]
Description: hypothetical protein Ctob_007349 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
  ------ inclusion threshold ------
      0.078   13.3   0.0       0.15   12.4   0.0    1.4  1  Cadherin_tail  Cadherin C-terminal cytoplasmic tail, catenin-
       0.35    8.5   0.1       0.45    8.1   0.1    1.0  1  Med23          Mediator complex subunit 23


Domain annotation for each model (and alignments):
>> Cadherin_tail  Cadherin C-terminal cytoplasmic tail, catenin-binding region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   1.6e-05      0.15       5      43 ..      78     117 ..      74     130 .. 0.76

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 1.6e-05
  Cadherin_tail   5 aDWRysaslRagmqg.svhleeasvlegaqgvleqqwPtv 43 
                    aDWRys  lRa++q  ++       ++ a++ l+  wP +
     KOO24437.1  78 ADWRYSDDLRASVQVeALRCTRVLAVRVAAEHLTALWPVA 117
                    8***********9861455556666777888889999954 PP

>> Med23  Mediator complex subunit 23
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.1   0.1     5e-05      0.45    1058    1157 ..      49     155 ..      23     157 .. 0.70

  Alignments for each domain:
  == domain 1  score: 8.1 bits;  conditional E-value: 5e-05
       Med23 1058 aWvPeldYYveLikRl.vdtldgktkfvatdWrfnEfpnpaahaLyvtcvEllalpvspevvan.......alldvvlkgyklipsneieswinaig 1146
                   Wv + + Yv  ++ +  +++    kf   dWr  +   +++++  + c  +la+ v++e++++        l  v+l   +++p+  + + + ++ 
  KOO24437.1   49 LWVGDHNQYVGALQGMlIESVVAGFKFGYADWRYSDDLRASVQVEALRCTRVLAVRVAAEHLTAlwpvaiaELQRVLLAPLEARPAL-LLAACQLVD 144 
                  5*****9999888765268888889*********99999********************9985311111112333444444444443.356677888 PP

       Med23 1147 lvltaLPeaYw 1157
                   +lt LP+a++
  KOO24437.1  145 TLLTVLPDAFS 155 
                  88888888875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (334 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       481  (0.026828); expected 358.6 (0.02)
Passed bias filter:                      322  (0.0179597); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.46u 0.28s 00:00:00.74 Elapsed: 00:00:00.43
# Mc/sec: 2322.30
//
Query:       KOO24438.1  [L=716]
Description: hypothetical protein Ctob_002019 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.2e-14   50.8   2.1     0.0014   18.5   0.1    5.3  5  LRR_6     Leucine Rich repeat
     0.0036   17.0   2.6        2.3    8.0   0.4    4.3  3  LRR_8     Leucine rich repeat
     0.0071   16.7   1.5         53    4.9   0.0    4.8  5  LRR_1     Leucine Rich Repeat
  ------ inclusion threshold ------
      0.077   13.5   6.3        1.1    9.8   1.1    4.2  4  LRR_4     Leucine Rich repeats (2 copies)


Domain annotation for each model (and alignments):
>> LRR_6  Leucine Rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.5   0.1   3.2e-07    0.0014       4      23 ..     356     375 ..     354     375 .. 0.94
   2 ?    0.3   0.0      0.22   9.8e+02       3      11 ..     491     499 ..     490     512 .. 0.77
   3 !   18.3   0.2   3.8e-07    0.0017       1      24 []     517     540 ..     517     540 .. 0.95
   4 !    7.8   0.0   0.00084       3.8       3      24 .]     548     569 ..     546     569 .. 0.88
   5 ?   -0.9   0.0      0.53   2.4e+03       7      14 ..     602     609 ..     602     611 .. 0.86

  Alignments for each domain:
  == domain 1  score: 18.5 bits;  conditional E-value: 3.2e-07
       LRR_6   4 hLteLdLsgNdIgDeGaeaL 23 
                 +Lt L+Ls+N++g +G+ea+
  KOO24438.1 356 SLTCLNLSYNELGTKGGEAI 375
                 8*****************98 PP

  == domain 2  score: 0.3 bits;  conditional E-value: 0.22
       LRR_6   3 thLteLdLs 11 
                 ++L+ L+Ls
  KOO24438.1 491 STLRQLNLS 499
                 79******9 PP

  == domain 3  score: 18.3 bits;  conditional E-value: 3.8e-07
       LRR_6   1 snthLteLdLsgNdIgDeGaeaLa 24 
                 +n +Lt L+L++N +gD  a+a+a
  KOO24438.1 517 QNKTLTNLNLNSNRLGDRSAKAFA 540
                 599*******************97 PP

  == domain 4  score: 7.8 bits;  conditional E-value: 0.00084
       LRR_6   3 thLteLdLsgNdIgDeGaeaLa 24 
                 + L+ L++  N Ig +G+  +a
  KOO24438.1 548 SQLKVLSIVNNRIGPVGGDEFA 569
                 679**************98776 PP

  == domain 5  score: -0.9 bits;  conditional E-value: 0.53
       LRR_6   7 eLdLsgNd 14 
                 eLdL++N 
  KOO24438.1 602 ELDLRSNP 609
                 7******6 PP

>> LRR_8  Leucine rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.6   0.1    0.0063        28      26      48 ..     356     378 ..     353     380 .. 0.85
   2 ?   -0.9   0.0      0.33   1.5e+03      51      59 ..     493     501 ..     481     505 .. 0.64
   3 !    8.0   0.4   0.00051       2.3       2      45 ..     520     568 ..     519     571 .. 0.75

  Alignments for each domain:
  == domain 1  score: 4.6 bits;  conditional E-value: 0.0063
                 T--EEE--SS---GGGGGGGTT- CS
       LRR_8  26 nLkvLdLsnNllttlspgafsgL 48 
                 +L+ L+Ls+N+l t   +a++ L
  KOO24438.1 356 SLTCLNLSYNELGTKGGEAIERL 378
                 5888*******999988888766 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 0.33
                 -.EEE--SS CS
       LRR_8  51 LrsLdLsgN 59 
                 Lr+L+Ls +
  KOO24438.1 493 LRQLNLSAD 501
                 666666654 PP

  == domain 3  score: 8.0 bits;  conditional E-value: 0.00051
                 T-SEEE-TTS--SEE-TTSSTT-.....TT--EEE--SS---GGGGGGG CS
       LRR_8   2 nLtsLdLsnNrltslddeaFkgl.....snLkvLdLsnNllttlspgaf 45 
                 +Lt+L+L++Nrl + + +aF  +     s+LkvL++ nN++  +  + f
  KOO24438.1 520 TLTNLNLNSNRLGDRSAKAFAVVvtsadSQLKVLSIVNNRIGPVGGDEF 568
                 799*********9999999975334444788888888888876666666 PP

>> LRR_1  Leucine Rich Repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.1   0.0     0.023     1e+02       1      17 [.     356     372 ..     356     382 .. 0.71
   2 ?   -3.4   0.0         4   1.8e+04       2       8 ..     493     499 ..     492     501 .. 0.86
   3 ?    4.9   0.0     0.012        53       2      20 ..     521     539 ..     520     542 .. 0.86
   4 ?   -0.1   0.0      0.52   2.3e+03       1      12 [.     549     560 ..     549     574 .. 0.82
   5 ?    1.7   0.0      0.14   6.1e+02       4      17 ..     602     622 ..     602     628 .. 0.71

  Alignments for each domain:
  == domain 1  score: 4.1 bits;  conditional E-value: 0.023
       LRR_1   1 nLrhLdLsnnpllglpp 17 
                 +L+ L+Ls+n l+ ++ 
  KOO24438.1 356 SLTCLNLSYNELGTKGG 372
                 6999*******955443 PP

  == domain 2  score: -3.4 bits;  conditional E-value: 4
       LRR_1   2 LrhLdLs 8  
                 Lr L+Ls
  KOO24438.1 493 LRQLNLS 499
                 999**96 PP

  == domain 3  score: 4.9 bits;  conditional E-value: 0.012
       LRR_1   2 LrhLdLsnnpllglppnsf 20 
                 L+ L+L++n+l++ ++ +f
  KOO24438.1 521 LTNLNLNSNRLGDRSAKAF 539
                 889********99988887 PP

  == domain 4  score: -0.1 bits;  conditional E-value: 0.52
       LRR_1   1 nLrhLdLsnnpl 12 
                 +L++L + nn++
  KOO24438.1 549 QLKVLSIVNNRI 560
                 59********97 PP

  == domain 5  score: 1.7 bits;  conditional E-value: 0.14
       LRR_1   4 hLdLsnnpl.......lglpp 17 
                 +LdL++np+       lgl++
  KOO24438.1 602 ELDLRSNPFasmmwtlLGLQD 622
                 69******8655555555555 PP

>> LRR_4  Leucine Rich repeats (2 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.4   0.0      0.21   9.5e+02      20      40 ..     286     312 ..     278     316 .. 0.65
   2 ?    0.9   0.1      0.15   6.8e+02       2      13 ..     356     367 ..     356     371 .. 0.69
   3 ?    5.2   2.6    0.0067        30       3      37 ..     493     532 ..     491     537 .. 0.63
   4 ?    9.8   1.1   0.00024       1.1       2      39 ..     520     563 ..     519     569 .. 0.78

  Alignments for each domain:
  == domain 1  score: 0.4 bits;  conditional E-value: 0.21
                 H......H-TT--EEE-.-S-----GG CS
       LRR_4  20 e......klpnLkeLdLsgNnlitdld 40 
                 +      klp+L+ +++ g  +  +ld
  KOO24438.1 286 QfihcikKLPHLERVSVDGGRQWISLD 312
                 33345536******9997766666665 PP

  == domain 2  score: 0.9 bits;  conditional E-value: 0.15
                 S--EEE--SS-- CS
       LRR_4   2 nLevLdLsnNql 13 
                 +L+ L+Ls N l
  KOO24438.1 356 SLTCLNLSYNEL 367
                 477777777766 PP

  == domain 3  score: 5.2 bits;  conditional E-value: 0.0067
                 --EEE--.SS---E-S-..HH....H-TT--EEE-.-S---- CS
       LRR_4   3 LevLdLs.nNqltdipl..le....klpnLkeLdLsgNnlit 37 
                 L+ L+Ls +  + d  +  l+    +++ L+ L+L++N +++
  KOO24438.1 493 LRQLNLSaD-EIGDAVGeaLGlslcQNKTLTNLNLNSN-RLG 532
                 677777777.7777666553343434555888888666.554 PP

  == domain 4  score: 9.8 bits;  conditional E-value: 0.00024
                 S--EEE--SS---E-S-..HH....H-TT.--EEE-.-S-----G CS
       LRR_4   2 nLevLdLsnNqltdipl..le....klpn.LkeLdLsgNnlitdl 39 
                  L++L+L++N+l d +   ++    + ++ Lk+L++ +N +i+++
  KOO24438.1 520 TLTNLNLNSNRLGDRSAkaFAvvvtSADSqLKVLSIVNN-RIGPV 563
                 69***********99998866666544447******555.98876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (716 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       298  (0.0166211); expected 358.6 (0.02)
Passed bias filter:                      271  (0.0151152); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.54u 0.28s 00:00:00.82 Elapsed: 00:00:00.42
# Mc/sec: 5068.57
//
Query:       KOO24439.1  [L=293]
Description: e3 ubiquitin-protein ligase ubr4 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (293 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       415  (0.0231469); expected 358.6 (0.02)
Passed bias filter:                      334  (0.018629); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.46u 0.21s 00:00:00.67 Elapsed: 00:00:00.40
# Mc/sec: 2224.04
//
Query:       KOO24440.1  [L=486]
Description: alpha beta hydrolase fold-1 domain-containing protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    7.9e-13   48.2   0.3    4.1e-10   39.3   0.3    2.2  2  Hydrolase_4    Serine aminopeptidase, S33
    7.3e-05   22.5   0.1    0.00011   22.0   0.1    1.4  1  Abhydrolase_1  alpha/beta hydrolase fold
     0.0085   15.8   0.0      0.014   15.0   0.0    1.4  1  FSH1           Serine hydrolase (FSH1)
  ------ inclusion threshold ------
      0.016   14.8   0.0       0.03   13.9   0.0    1.4  1  Peptidase_S15  X-Pro dipeptidyl-peptidase (S15 family)
       0.03   14.1   0.2        4.2    7.2   0.1    2.4  2  RAP80_UIM      RAP80 N-terminal ubiquitin interaction motif


Domain annotation for each model (and alignments):
>> Hydrolase_4  Serine aminopeptidase, S33
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.3   0.3   1.1e-13   4.1e-10       6     115 ..     104     210 ..     102     249 .. 0.88
   2 !    6.6   0.0    0.0011       4.1     187     225 ..     262     299 ..     255     303 .. 0.81

  Alignments for each domain:
  == domain 1  score: 39.3 bits;  conditional E-value: 1.1e-13
  Hydrolase_4   6 vvvlvHGlaehsgryaelaeaLaaqGfavyalDhrGhGrsegkrghvpsfddyvdDlaafvekvkeehpelplfllGhSmGGliallyllrypdkvag 103
                   v+ +HG a+      ++++a  a G +v+ +D  G G s g+   +  +++  dD+aa++e+++++   + + l+G SmG++ a+l + r ++ +ag
   KOO24440.1 104 CVIYMHGNASCRAEALQIMAAVFATGANVFSFDFAGCGLSTGEFISL-GWHE-KDDVAAVIEHLRRTGLVTSIALWGRSMGSVSAVLQASRDAS-IAG 198
                  58999************************************999944.4444.59************************************999.*** PP

  Hydrolase_4 104 lilsaPalkika 115
                  l+l +P+ ++++
   KOO24440.1 199 LVLDSPFASLEQ 210
                  ******988764 PP

  == domain 2  score: 6.6 bits;  conditional E-value: 0.0011
  Hydrolase_4 187 aakitlPllllhGeaDkvvdpeasrelyerlgskdktlk 225
                  a+   +P l+ +G+aD +v p  s+ +y++ +  dk+l 
   KOO24440.1 262 AKTCFVPALFGCGDADVLVRPHHSQLIYDAYAG-DKNLV 299
                  445559**********************99886.77665 PP

>> Abhydrolase_1  alpha/beta hydrolase fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.0   0.1     3e-08   0.00011       3     127 ..     105     222 ..     103     301 .. 0.85

  Alignments for each domain:
  == domain 1  score: 22.0 bits;  conditional E-value: 3e-08
                    EEEE-STTTCGGGGTTGHHHHHHHHTTSEEEEEEETTSTTSSSTTTGB..CHHSHHHHHHHHHHHHHHCTTSSEEEEEETHHHHHHHHHHHHHGGG CS
  Abhydrolase_1   3 lvilhGlpgssdvwaerglapaLakdgfdvillDlrGvgySspapacin.ddygtasvaddldrildalgddkltlvGhSmGGmialayaaeyper 97 
                    +++ hG + +     +  ++ a   +g+ v+ +D  G+g S+    +   +  + ++va++++ ++    + +++l+G SmG+  a   a++ + +
     KOO24440.1 105 VIYMHGNASCRAEALQ--IMAAVFATGANVFSFDFAGCGLSTGEFISLGwH--EKDDVAAVIEHLRRTGLVTSIALWGRSMGSVSAVLQASR-DAS 195
                    8889999999987777..88888888***************8776433244..8999**************************999999998.777 PP

                    EEEEEEESECSSCCHHHHHHHHHHHHHHCH CS
  Abhydrolase_1  98 Vkalvllgaidpaaslieaqrqqaksfpdf 127
                    +++lvl+++   +asl++ ++  + s p++
     KOO24440.1 196 IAGLVLDSP---FASLEQVALELVTSAPET 222
                    *********...777766666666555554 PP

>> FSH1  Serine hydrolase (FSH1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.0     4e-06     0.014     156     200 ..     261     305 ..     152     306 .. 0.75

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 4e-06
        FSH1 156 eedkiqtptLhvlGelDtvvdeerseaLaeafknsskvlkHpggH 200
                   +   +p L+  G++D +v ++ s+ +++a++ +++++k++g+H
  KOO24440.1 261 AAKTCFVPALFGCGDADVLVRPHHSQLIYDAYAGDKNLVKFSGDH 305
                 3344479************************************** PP

>> Peptidase_S15  X-Pro dipeptidyl-peptidase (S15 family)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.0   8.5e-06      0.03      53     123 ..     125     193 ..      73     214 .. 0.81

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 8.5e-06
                    HHHTT-EEEEEE-TTSTTS-S---TTTTTHHHHHHHHHHHHHHCTTEEEEEEEEEECHHHHHHHHHCTT-- CS
  Peptidase_S15  53 fvarGYavVvqdvrGtggSeGeftvgdsdeaedgadvidWlakqpwsnGkVgmtGiSYlGttqllaaatgv 123
                    + a G  v   d  G g S+Gef + +++e +d+a+vi+ l+++   + +++ +G S + + ++l a+ ++
     KOO24440.1 125 VFATGANVFSFDFAGCGLSTGEFISLGWHEKDDVAAVIEHLRRTGLVT-SIALWGRSMGSVSAVLQAS-RD 193
                    5566666777899****************************9985554.7999999988888887776.44 PP

>> RAP80_UIM  RAP80 N-terminal ubiquitin interaction motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.2   0.1    0.0012       4.2      25      48 ..     381     404 ..     377     409 .. 0.87
   2 ?    4.2   0.0      0.01        36      32      48 ..     466     482 ..     460     485 .. 0.87

  Alignments for each domain:
  == domain 1  score: 7.2 bits;  conditional E-value: 0.0012
   RAP80_UIM  25 ArqvndqeEeEEeLLRkAiAEsLn 48 
                 A+++    E+E+++L +AiA sL+
  KOO24440.1 381 AQRLAMMREQEDAMLMQAIAASLE 404
                 67777889**************97 PP

  == domain 2  score: 4.2 bits;  conditional E-value: 0.01
   RAP80_UIM  32 eEeEEeLLRkAiAEsLn 48 
                 ++e+E+L+R Ai  sL+
  KOO24440.1 466 DDEDEALMREAIRLSLE 482
                 5799********99996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (486 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       350  (0.0195214); expected 358.6 (0.02)
Passed bias filter:                      291  (0.0162307); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.50u 0.27s 00:00:00.77 Elapsed: 00:00:00.42
# Mc/sec: 3439.22
//
Query:       KOO24441.1  [L=240]
Description: hypothetical protein Ctob_002011 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (240 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       376  (0.0209716); expected 358.6 (0.02)
Passed bias filter:                      333  (0.0185733); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.41u 0.24s 00:00:00.64 Elapsed: 00:00:00.40
# Mc/sec: 1794.34
//
Query:       KOO24442.1  [L=253]
Description: family 8 glycosyl transferase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
     0.0016   18.0   0.0     0.0048   16.5   0.0    1.6  1  Glyco_transf_8  Glycosyl transferase family 8


Domain annotation for each model (and alignments):
>> Glyco_transf_8  Glycosyl transferase family 8
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.0   2.7e-07    0.0048     101     251 ..      57     201 ..      45     204 .. 0.83

  Alignments for each domain:
  == domain 1  score: 16.5 bits;  conditional E-value: 2.7e-07
  Glyco_transf_8 101 pkldkilylDaDvvvqgdlseLwdldlkgkvlaavedkrfkkylnksepliaenfkpeacyFnaGvllfdldewrkenitetlikwlnlnekrtl 195
                       l+   ylD+D vvq++l++  ++ l+   l           ++ ++p+     +++   Fn+Gv  + +++       + li wl+  ++   
      KOO24442.1  57 TGLRVAFYLDSDLVVQRNLDSVVSTLLNRPSL-----------MEARTPQGCLGNDAAYTWFNTGVWAVKPNAHEM----SGLIAWLKNGSS--V 134
                     5566678*********************4444...........555667888888899999***********9875....56799*999998..* PP

  Glyco_transf_8 196 lklgdqdilnivfk..........gkvkeldkkynvlglgy...eqskkskkeitenaaviHyiGpaKP 251
                        gdq     + k          ++v  l+  yn+  +         ++ +    + +v+H++G+ KP
      KOO24442.1 135 CYDGDQSAAMGYWKspggkggrlrSQVLLLHVGYNMKADQGpqaC--LSKRNLNASDLHVVHFSGKQKP 201
                     *******9999888**********************999998433..44444444699**********9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (253 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       375  (0.0209158); expected 358.6 (0.02)
Passed bias filter:                      321  (0.017904); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.23s 00:00:00.66 Elapsed: 00:00:00.39
# Mc/sec: 1949.17
//
Query:       KOO24443.1  [L=652]
Description: ankyrin repeat protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.8e-26   91.5   3.7    8.8e-13   48.7   0.2    3.9  5  Ank_2     Ankyrin repeats (3 copies)
    2.5e-19   69.4   9.1    6.9e-06   26.5   0.0    5.3  7  Ank_4     Ankyrin repeats (many copies)
    5.9e-18   63.1   3.5     0.0023   18.3   0.1    5.9  6  Ank_3     Ankyrin repeat
    4.1e-14   52.5   6.5    0.00089   19.5   0.1    5.2  5  Ank_5     Ankyrin repeats (many copies)
    2.7e-13   49.7  11.4     0.0011   19.4   0.0    6.2  6  Ank       Ankyrin repeat


Domain annotation for each model (and alignments):
>> Ank_2  Ankyrin repeats (3 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.7   0.0   3.7e-09   1.3e-05      18      80 ..     259     327 ..     243     330 .. 0.80
   2 !   48.7   0.2   2.5e-16   8.8e-13       2      82 ..     339     434 ..     338     435 .. 0.83
   3 !   33.5   0.1   1.3e-11   4.7e-08      11      80 ..     386     466 ..     383     469 .. 0.87
   4 ?    1.3   0.0      0.15   5.4e+02       3      23 ..     445     466 ..     443     476 .. 0.79
   5 ?   -2.0   0.0       1.6   5.6e+03      27      45 ..     550     569 ..     518     580 .. 0.66

  Alignments for each domain:
  == domain 1  score: 25.7 bits;  conditional E-value: 3.7e-09
       Ank_2  18 egadpn.kngktaLhyAakngnleivklLleh.ad....ndgrtpLhyAarsghleivklLlekgadin 80 
                 +g+d+  ++g+t+L +A++  ++  +++ l h ad     +g++pL +Aa+ g +e++ +L++ gad+ 
  KOO24443.1 259 KGFDAPlECGLTPLLVACRMHSVAGARFCLRHgADpnmaINGKSPLLLAAQDGATELLYVLIQAGADVS 327
                 444544449***********987779*****9966546777*********99**********99***97 PP

  == domain 2  score: 48.7 bits;  conditional E-value: 2.5e-16
       Ank_2   2 hlAakngnlelvklLl.egadpn..k.ngktaLhyAakng.....nleivklLleh......adndgrtpLhyAarsghleivklLlekgadinlk 82 
                 h A++ gn ++++ Ll +gad++  + ng t+  y+ak+        ++++ Ll++       d++g +pL +A++++h e+v+lLl+ gad +l 
  KOO24443.1 339 HAAVEAGNVSCLEMLLdFGADADqrDhNGCTPCAYCAKAKtwtaeMADCLRVLLDAgatpdkSDREGFSPLLLAVQKNHHECVQLLLDAGADAELA 434
                 889999*99************997637***********853321133568****977676666799*********************99**98765 PP

  == domain 3  score: 33.5 bits;  conditional E-value: 1.3e-11
       Ank_2  11 elvklLl.egadpn.k..ngktaLhyAakngnleivklLleh......ad.ndgrtpLhyAarsghleivklLlekgadin 80 
                 ++++ Ll +ga p+ +  +g ++L +A++++++e+v+lLl++      ad  +g t+  +A++++ +e++  Ll  gad+ 
  KOO24443.1 386 DCLRVLLdAGATPDkSdrEGFSPLLLAVQKNHHECVQLLLDAgadaelADpVSGATACLLAVQQNAIEMCMHLLGAGADPR 466
                 69999**99999997358**********************9775655555989*********************8899985 PP

  == domain 4  score: 1.3 bits;  conditional E-value: 0.15
       Ank_2   3 lAakngnlelvklLl.egadpn 23 
                 lA+++++ e++ +Ll +gadp+
  KOO24443.1 445 LAVQQNAIEMCMHLLgAGADPR 466
                 6888888899999998888886 PP

  == domain 5  score: -2.0 bits;  conditional E-value: 1.6
       Ank_2  27 ktaLhyAakngnlei.vklL 45 
                  t+ h A  ++++e+ +++L
  KOO24443.1 550 TTPKHEALLEQHREAaAEAL 569
                 35555555555555422333 PP

>> Ank_4  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.1   0.0    0.0099        36      32      52 ..     265     285 ..     244     286 .. 0.81
   2 !   16.3   0.1   3.1e-06     0.011       2      55 .]     269     320 ..     268     320 .. 0.92
   3 !   26.5   0.0   1.9e-09   6.9e-06       3      55 .]     302     354 ..     300     354 .. 0.95
   4 !   20.7   0.1   1.3e-07   0.00046       4      44 ..     337     376 ..     334     379 .. 0.93
   5 !   26.0   0.0   2.8e-09     1e-05      15      55 .]     386     425 ..     381     425 .. 0.96
   6 !   14.5   0.2   1.1e-05     0.041      11      50 ..     415     454 ..     413     459 .. 0.92
   7 ?    1.5   0.0      0.14   4.9e+02       3      28 ..     441     466 ..     439     471 .. 0.84

  Alignments for each domain:
  == domain 1  score: 5.1 bits;  conditional E-value: 0.0099
       Ank_4  32 nrsGetalhiAakrgnveilk 52 
                  ++G+t+l  A+++ +v  ++
  KOO24443.1 265 LECGLTPLLVACRMHSVAGAR 285
                 479***********9998766 PP

  == domain 2  score: 16.3 bits;  conditional E-value: 3.1e-06
       Ank_4   2 ltaLhyaaisgrlelvrlLlekgadinaqdnrsGetalhiAakrgnveilklLl 55 
                 lt+L  a+ +  +  +r++l +gad+n+   ++G ++l  Aa+ g  e l  L+
  KOO24443.1 269 LTPLLVACRMHSVAGARFCLRHGADPNMA--INGKSPLLLAAQDGATELLYVLI 320
                 89**************************9..99*********999888887776 PP

  == domain 3  score: 26.5 bits;  conditional E-value: 1.9e-09
       Ank_4   3 taLhyaaisgrlelvrlLlekgadinaqdnrsGetalhiAakrgnveilklLl 55 
                 ++L  aa++g +el+  L++ gad+ a + ++G  ++h A+  gnv++l++Ll
  KOO24443.1 302 SPLLLAAQDGATELLYVLIQAGADVSAATADEGIAPVHAAVEAGNVSCLEMLL 354
                 57899***********************8899********************8 PP

  == domain 4  score: 20.7 bits;  conditional E-value: 1.3e-07
       Ank_4   4 aLhyaaisgrlelvrlLlekgadinaqdnrsGetalhiAak 44 
                 + h+a+++g++ +++ Ll++gad + + + +G t+  ++ak
  KOO24443.1 337 PVHAAVEAGNVSCLEMLLDFGADADQR-DHNGCTPCAYCAK 376
                 78*************************.******9988886 PP

  == domain 5  score: 26.0 bits;  conditional E-value: 2.8e-09
       Ank_4  15 elvrlLlekgadinaqdnrsGetalhiAakrgnveilklLl 55 
                 +++r Ll+ ga ++++ +r+G+++l  A+++++ e+++lLl
  KOO24443.1 386 DCLRVLLDAGATPDKS-DREGFSPLLLAVQKNHHECVQLLL 425
                 79*************9.***********************8 PP

  == domain 6  score: 14.5 bits;  conditional E-value: 1.1e-05
       Ank_4  11 sgrlelvrlLlekgadinaqdnrsGetalhiAakrgnvei 50 
                 ++++e+v+lLl+ gad    d+ sG ta   A++ + +e+
  KOO24443.1 415 KNHHECVQLLLDAGADAELADPVSGATACLLAVQQNAIEM 454
                 79**************99999************9988877 PP

  == domain 7  score: 1.5 bits;  conditional E-value: 0.14
       Ank_4   3 taLhyaaisgrlelvrlLlekgadin 28 
                 ta+  a++++ +e+++ Ll  gad+ 
  KOO24443.1 441 TACLLAVQQNAIEMCMHLLGAGADPR 466
                 66677899***************975 PP

>> Ank_3  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.3   0.1   6.4e-07    0.0023       1      31 []     267     296 ..     267     296 .. 0.95
   2 !   13.6   0.0   2.2e-05     0.078       1      30 [.     299     327 ..     299     328 .. 0.95
   3 !   11.8   0.0   8.2e-05      0.29       2      30 ..     334     361 ..     333     362 .. 0.90
   4 ?   -1.9   0.0       2.4   8.6e+03      17      30 ..     387     399 ..     366     400 .. 0.66
   5 !   14.6   0.0     1e-05     0.037       2      29 ..     405     431 ..     404     433 .. 0.92
   6 ?    0.0   0.0      0.57     2e+03       2      30 ..     439     466 ..     438     467 .. 0.83

  Alignments for each domain:
  == domain 1  score: 18.3 bits;  conditional E-value: 6.4e-07
       Ank_3   1 nGetpLhlAarsgnleivkfLlenkgadvna 31 
                 +G tpL +A+r  +++ ++f+l+ +gad+n+
  KOO24443.1 267 CGLTPLLVACRMHSVAGARFCLR-HGADPNM 296
                 699********************.9****95 PP

  == domain 2  score: 13.6 bits;  conditional E-value: 2.2e-05
       Ank_3   1 nGetpLhlAarsgnleivkfLlenkgadvn 30 
                 nG +pL lAa  g +e++  L++  gadv 
  KOO24443.1 299 NGKSPLLLAAQDGATELLYVLIQ-AGADVS 327
                 799********************.9***97 PP

  == domain 3  score: 11.8 bits;  conditional E-value: 8.2e-05
       Ank_3   2 GetpLhlAarsgnleivkfLlenkgadvn 30 
                 G  p h A+++gn++ +++Ll+ +gad +
  KOO24443.1 334 GIAPVHAAVEAGNVSCLEMLLD-FGADAD 361
                 66689*****************.****86 PP

  == domain 4  score: -1.9 bits;  conditional E-value: 2.4
       Ank_3  17 ivkfLlenkgadvn 30 
                  ++ Ll+  ga ++
  KOO24443.1 387 CLRVLLD-AGATPD 399
                 3899999.788776 PP

  == domain 5  score: 14.6 bits;  conditional E-value: 1e-05
       Ank_3   2 GetpLhlAarsgnleivkfLlenkgadv 29 
                 G +pL lA+  +++e v++Ll+  gad 
  KOO24443.1 405 GFSPLLLAVQKNHHECVQLLLD-AGADA 431
                 89********************.8*996 PP

  == domain 6  score: 0.0 bits;  conditional E-value: 0.57
       Ank_3   2 GetpLhlAarsgnleivkfLlenkgadvn 30 
                 G t+  lA+ ++ +e++  Ll   gad++
  KOO24443.1 439 GATACLLAVQQNAIEMCMHLLG-AGADPR 466
                 6677789999*****9989999.899986 PP

>> Ank_5  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.5   0.1   8.1e-05      0.29      14      45 ..     266     297 ..     254     307 .. 0.84
   2 ?    2.4   0.0     0.059   2.1e+02      15      45 ..     301     329 ..     296     338 .. 0.83
   3 !   19.2   0.2   3.1e-07    0.0011      18      55 ..     336     373 ..     319     374 .. 0.85
   4 !   19.5   0.1   2.5e-07   0.00089       1      46 [.     391     435 ..     391     446 .. 0.91
   5 ?   -0.1   0.0      0.36   1.3e+03      22      42 ..     445     465 ..     438     468 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 8.1e-05
       Ank_5  14 gggntpLhvAakygaadvvrlLlargadlnlt 45 
                 ++g tpL vA++ ++   +r++l +gad+n+ 
  KOO24443.1 266 ECGLTPLLVACRMHSVAGARFCLRHGADPNMA 297
                 5788**************************95 PP

  == domain 2  score: 2.4 bits;  conditional E-value: 0.059
       Ank_5  15 ggntpLhvAakygaadvvrlLlargadlnlt 45 
                 +  +pL +Aa  ga +++ +L+  gad  + 
  KOO24443.1 301 K--SPLLLAAQDGATELLYVLIQAGADVSAA 329
                 3..8999***************999988765 PP

  == domain 3  score: 19.2 bits;  conditional E-value: 3.1e-07
       Ank_5  18 tpLhvAakygaadvvrlLlargadlnltdsrGltaldl 55 
                  p h A+++g+ +++++Ll++gad++++d +G t++ +
  KOO24443.1 336 APVHAAVEAGNVSCLEMLLDFGADADQRDHNGCTPCAY 373
                 57799******************************976 PP

  == domain 4  score: 19.5 bits;  conditional E-value: 2.5e-07
       Ank_5   1 LlehgpadvnrldgggntpLhvAakygaadvvrlLlargadlnltd 46 
                 Ll++g a ++ +d++g++pL +A+ +++ ++v+lLl+ gad+ l d
  KOO24443.1 391 LLDAG-ATPDKSDREGFSPLLLAVQKNHHECVQLLLDAGADAELAD 435
                 89999.99********************************998766 PP

  == domain 5  score: -0.1 bits;  conditional E-value: 0.36
       Ank_5  22 vAakygaadvvrlLlargadl 42 
                 +A+ ++a +++  Ll  gad+
  KOO24443.1 445 LAVQQNAIEMCMHLLGAGADP 465
                 7999**********9888886 PP

>> Ank  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.7   0.2    0.0015       5.3       2      29 ..     268     296 ..     267     298 .. 0.75
   2 !    8.7   0.1   0.00071       2.5       1      30 [.     299     329 ..     299     331 .. 0.80
   3 !   10.7   0.0   0.00016      0.58       2      31 ..     334     364 ..     333     365 .. 0.88
   4 !    5.9   0.0    0.0054        19       1      31 [.     366     402 ..     366     403 .. 0.77
   5 !   19.4   0.0     3e-07    0.0011       2      26 ..     405     430 ..     404     436 .. 0.87
   6 ?   -1.0   0.1      0.82   2.9e+03       4      27 ..     441     465 ..     438     466 .. 0.66

  Alignments for each domain:
  == domain 1  score: 7.7 bits;  conditional E-value: 0.0015
                 SBBHHHHHHHHTTHHHHHHHH.TTTSTTC CS
         Ank   2 GnTPLHlAatngkkriiklLL.hGAnlna 29 
                 G TPL +A++  ++  +++ L hGA++n+
  KOO24443.1 268 GLTPLLVACRMHSVAGARFCLrHGADPNM 296
                 99*******6664444455678*****95 PP

  == domain 2  score: 8.7 bits;  conditional E-value: 0.00071
                 TSBBHHHHHHHHTTHHHHHHHH.TTTSTTCB CS
         Ank   1 dGnTPLHlAatngkkriiklLL.hGAnlnal 30 
                 +G +PL lAa+ g ++ +  L+  GA++ a 
  KOO24443.1 299 NGKSPLLLAAQDGATELLYVLIqAGADVSAA 329
                 79********77747777778966****886 PP

  == domain 3  score: 10.7 bits;  conditional E-value: 0.00016
                 SBBHHHHHHHHTTHHHHHHHH.TTTSTTCBT CS
         Ank   2 GnTPLHlAatngkkriiklLL.hGAnlnald 31 
                 G  P H A+  g+++++++LL  GA+ +++d
  KOO24443.1 334 GIAPVHAAVEAGNVSCLEMLLdFGADADQRD 364
                 66799****************66***99887 PP

  == domain 4  score: 5.9 bits;  conditional E-value: 0.0054
                 TSBBHHHHHHHHTT......HHHHHHHH.TTTSTTCBT CS
         Ank   1 dGnTPLHlAatngk......kriiklLL.hGAnlnald 31 
                 +G+TP  ++a  +k      +++++ LL  GA ++  d
  KOO24443.1 366 NGCTPCAYCA-KAKtwtaemADCLRVLLdAGATPDKSD 402
                 79******88.34456666677******66**998765 PP

  == domain 5  score: 19.4 bits;  conditional E-value: 3e-07
                 SBBHHHHHHHHTTHHHHHHHH.TTTS CS
         Ank   2 GnTPLHlAatngkkriiklLL.hGAn 26 
                 G++PL lA++ +++++++lLL  GA+
  KOO24443.1 405 GFSPLLLAVQKNHHECVQLLLdAGAD 430
                 9********************66987 PP

  == domain 6  score: -1.0 bits;  conditional E-value: 0.82
                 BHHHHHHHHTTHHHHHHHH.TTTST CS
         Ank   4 TPLHlAatngkkriiklLL.hGAnl 27 
                 T+  lA++ +  +++  LL  GA++
  KOO24443.1 441 TACLLAVQQNAIEMCMHLLgAGADP 465
                 5555777656456777799778997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (652 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       862  (0.0480785); expected 358.6 (0.02)
Passed bias filter:                      495  (0.0276089); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.63u 0.27s 00:00:00.90 Elapsed: 00:00:00.43
# Mc/sec: 4530.19
//
Query:       KOO24444.1  [L=115]
Description: hypothetical protein Ctob_002015 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.1e-09   38.6  23.6    1.4e-09   38.2  23.6    1.0  1  Cgr1      Cgr1 family


Domain annotation for each model (and alignments):
>> Cgr1  Cgr1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.2  23.6   7.9e-14   1.4e-09       9     102 ..       5      98 ..       3     103 .. 0.92

  Alignments for each domain:
  == domain 1  score: 38.2 bits;  conditional E-value: 7.9e-14
        Cgr1   9 ksWkteKkafrsksskkkkkkkkswekrqekrkkakaiKklekeLkdekeaerqrrieaikerrkakeEkeRleelaakm.hakkveRlkrrekR 102
                 ++Wk+++ka r +s  ++++ + swek+++ r++++a+ +++ ++ de ++e+++ +e+i++++k+keE++      +++ +++k++++ r++ R
  KOO24444.1   5 RPWKEPRKA-RASSLVAVPQIRDSWEKKEKIRAERAAVLAQQAAMDDEIRREKREERERIEAKKKKKEENRERGMTYQVItNTSKIKKMSRKQLR 98 
                 79*****77.55555576899*************************************************99999999999************99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (115 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2529  (0.141056); expected 358.6 (0.02)
Passed bias filter:                      649  (0.0361983); expected 358.6 (0.02)
Passed Vit filter:                        75  (0.00418317); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.23s 00:00:00.63 Elapsed: 00:00:00.37
# Mc/sec: 936.38
//
Query:       KOO24445.1  [L=340]
Description: hypothetical protein Ctob_002014 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    7.7e-08   32.2   0.7      0.016   15.6   0.0    4.2  4  TPR_17    Tetratricopeptide repeat
  ------ inclusion threshold ------
       0.13   13.2  18.6          1   10.4   0.3    5.2  5  TPR_14    Tetratricopeptide repeat
        2.1    8.9  13.5        6.2    7.4   0.3    3.9  4  TPR_19    Tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> TPR_17  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.4   0.0      0.34     2e+03      16      32 ..       1      18 [.       1      22 [. 0.67
   2 !    9.8   0.1   0.00018       1.1       1      26 [.      23      48 ..      23      57 .. 0.84
   3 !   15.6   0.0   2.7e-06     0.016       1      25 [.      60      84 ..      60      95 .. 0.89
   4 ?    1.4   0.0     0.087   5.2e+02      17      27 ..     122     132 ..     111     140 .. 0.79

  Alignments for each domain:
  == domain 1  score: -0.4 bits;  conditional E-value: 0.34
      TPR_17 16 ynnLAelllknGdlm.tA 32
                ++nL+ +l  +G+ + +A
  KOO24445.1  1 MTNLGSVLIDLGGEDnDA 18
                689*****9998432233 PP

  == domain 2  score: 9.8 bits;  conditional E-value: 0.00018
      TPR_17  1 lylkaleldPnnadaynnLAelllkn 26
                ly+ +l+++P ++da +nLA  l  +
  KOO24445.1 23 LYRMVLAIEPAHSDAAFNLALQLQDR 48
                68899***************988744 PP

  == domain 3  score: 15.6 bits;  conditional E-value: 2.7e-06
      TPR_17  1 lylkaleldPnnadaynnLAelllk 25
                lyl++++ dP+ +da+ nL+++l++
  KOO24445.1 60 LYLEVVAADPKRWDAWANLGTALAE 84
                7*********************986 PP

  == domain 4  score: 1.4 bits;  conditional E-value: 0.087
      TPR_17  17 nnLAelllknG 27 
                 ++LAel+++ G
  KOO24445.1 122 TYLAELYYNFG 132
                 67888888766 PP

>> TPR_14  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.3   0.00017         1      10      42 ..       7      42 ..       4      45 .. 0.79
   2 ?    9.0   1.5   0.00048       2.9      14      42 ..      51      79 ..      41      85 .. 0.87
   3 ?    0.8   0.2       0.2   1.2e+03      17      28 ..      89     100 ..      75     127 .. 0.59
   4 ?   -0.2   0.3      0.41   2.5e+03       4      22 ..     204     224 ..     202     236 .. 0.75
   5 ?    2.2   0.1      0.07   4.2e+02       4      28 ..     241     265 ..     239     269 .. 0.89

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00017
      TPR_14 10 allalG...dpdeAiallrralalaPddaeawllla 42
                +l  lG   + ++A++l+r +la  P++ +a + la
  KOO24445.1  7 VLIDLGgedNDARAEELYRMVLAIEPAHSDAAFNLA 42
                5555544436789***************99999887 PP

  == domain 2  score: 9.0 bits;  conditional E-value: 0.00048
      TPR_14 14 lGdpdeAiallrralalaPddaeawllla 42
                ++ ++eA+ l+ +++a++P+ ++aw  l+
  KOO24445.1 51 NDALREAASLYLEVVAADPKRWDAWANLG 79
                566899*******************9997 PP

  == domain 3  score: 0.8 bits;  conditional E-value: 0.2
      TPR_14  17 pdeAiallrral 28 
                 p +A ++++ra+
  KOO24445.1  89 PLQATRAFQRAI 100
                 445555555554 PP

  == domain 4  score: -0.2 bits;  conditional E-value: 0.41
      TPR_14   4 llalaealla..lGdpdeAia 22 
                 +l++a++l++  +G+++++++
  KOO24445.1 204 TLQRADVLERrmQGNHRASMR 224
                 688999998844588877654 PP

  == domain 5  score: 2.2 bits;  conditional E-value: 0.07
      TPR_14   4 llalaeallalGdpdeAiallrral 28 
                 lla+a++l   Gd+ + +a++ r+ 
  KOO24445.1 241 LLAAADVLVYFGDLSDVLAAFSRLS 265
                 7899*****************9975 PP

>> TPR_19  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.5   0.5    0.0041        24       8      32 ..      18      42 ..      14      54 .. 0.90
   2 ?    7.4   0.3     0.001       6.2       6      35 ..      53      82 ..      44      87 .. 0.88
   3 ?    3.7   0.2     0.015        91       6      38 ..      95     131 ..      90     132 .. 0.68
   4 ?   -2.2   0.2         1   6.2e+03      29      43 ..     242     256 ..     215     267 .. 0.50

  Alignments for each domain:
  == domain 1  score: 5.5 bits;  conditional E-value: 0.0041
      TPR_19  8 aeAlalleqalqedpknaearllLA 32
                a+A +l++ +l+ +p +++a+ +LA
  KOO24445.1 18 ARAEELYRMVLAIEPAHSDAAFNLA 42
                6899******************998 PP

  == domain 2  score: 7.4 bits;  conditional E-value: 0.001
      TPR_19  6 dyaeAlalleqalqedpknaearllLAeal 35
                 + eA++l+ ++ ++dpk ++a+++L  al
  KOO24445.1 53 ALREAASLYLEVVAADPKRWDAWANLGTAL 82
                57899*******************998887 PP

  == domain 3  score: 3.7 bits;  conditional E-value: 0.015
      TPR_19   6 dyaeA...lalleqalqedpk..naearllLAeallal 38 
                  +++A   l+++ +a + +p   +++a + LAe++++ 
  KOO24445.1  95 AFQRAileLERMHEASEGEPAeeSDDATY-LAELYYNF 131
                 57888333444444555566688999999.*****975 PP

  == domain 4  score: -2.2 bits;  conditional E-value: 1
      TPR_19  29 llLAeallalgqlde 43 
                 l+ A++l+  g+l +
  KOO24445.1 242 LAAADVLVYFGDLSD 256
                 233666655555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (340 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       407  (0.0227007); expected 358.6 (0.02)
Passed bias filter:                      276  (0.0153941); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.47u 0.25s 00:00:00.72 Elapsed: 00:00:00.42
# Mc/sec: 2426.12
//
Query:       KOO24446.1  [L=830]
Description: hypothetical protein Ctob_002020 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (830 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       464  (0.0258799); expected 358.6 (0.02)
Passed bias filter:                      439  (0.0244855); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.69u 0.26s 00:00:00.95 Elapsed: 00:00:00.46
# Mc/sec: 5444.84
//
Query:       KOO24447.1  [L=757]
Description: hypothetical protein Ctob_002022 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (757 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2146  (0.119694); expected 358.6 (0.02)
Passed bias filter:                      466  (0.0259914); expected 358.6 (0.02)
Passed Vit filter:                        67  (0.00373696); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.77u 0.32s 00:00:01.09 Elapsed: 00:00:00.46
# Mc/sec: 4978.07
//
Query:       KOO24448.1  [L=335]
Description: glycosyl group 2 family protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (335 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       501  (0.0279436); expected 358.6 (0.02)
Passed bias filter:                      399  (0.0222544); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.45u 0.29s 00:00:00.74 Elapsed: 00:00:00.43
# Mc/sec: 2353.73
//
Query:       KOO24449.1  [L=281]
Description: hypothetical protein Ctob_002012 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    9.8e-07   28.7   0.3    0.00078   19.2   0.0    2.3  2  Amidoligase_2  Putative amidoligase enzyme


Domain annotation for each model (and alignments):
>> Amidoligase_2  Putative amidoligase enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.4   0.0   0.00017       3.1      99     128 ..      31      64 ..      16      85 .. 0.67
   2 !   19.2   0.0   4.4e-08   0.00078     213     253 .]     179     218 ..     171     218 .. 0.88

  Alignments for each domain:
  == domain 1  score: 7.4 bits;  conditional E-value: 0.00017
  Amidoligase_2  99 raLreagavgtnas......cglhvHldaevpdlea 128
                    r+Lr  ga +   s      c+lhvH++ ++ +  a
     KOO24449.1  31 RVLRHLGAGAPALSdtanggCSLHVHVNVANGS--A 64 
                    55555444442222224567*********9988..4 PP

  == domain 2  score: 19.2 bits;  conditional E-value: 4.4e-08
  Amidoligase_2 213 ynflnlksrlkerpTvEfRlpngtldaeeikawirlclalv 253
                    + +lnl  rl   +T+EfR + gtld++ i +w+ +c+a+v
     KOO24449.1 179 HCSLNLR-RLTTYGTLEFRRFHGTLDDALIVRWAHFCVAFV 218
                    5679999.666688************************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (281 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       320  (0.0178482); expected 358.6 (0.02)
Passed bias filter:                      266  (0.0148363); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.24s 00:00:00.68 Elapsed: 00:00:00.41
# Mc/sec: 2034.03
//
Query:       KOO24450.1  [L=379]
Description: hypothetical protein Ctob_003210 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.8e-15   55.7   0.1    0.00045   20.2   0.1    3.9  4  TIG       IPT/TIG domain


Domain annotation for each model (and alignments):
>> TIG  IPT/TIG domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.2   0.1   2.5e-08   0.00045       1      27 [.      37      70 ..      37     142 .. 0.76
   2 !   13.1   0.0   4.3e-06     0.077       1      51 [.     153     207 ..     153     278 .. 0.70
   3 ?   -0.7   0.0     0.083   1.5e+03      18      39 ..     260     281 ..     248     291 .. 0.77
   4 !   17.7   0.0   1.6e-07    0.0029       7      61 ..     302     363 ..     298     373 .. 0.85

  Alignments for each domain:
  == domain 1  score: 20.2 bits;  conditional E-value: 2.5e-08
         TIG  1 PvissisPnsgsasgGttititGtnF.......g 27
                P++s++ P+ g++sgGt +ti+G +F       +
  KOO24450.1 37 PIVSTLIPPGGPISGGTALTIRGMGFgggsadpQ 70
                899***********************65444442 PP

  == domain 2  score: 13.1 bits;  conditional E-value: 4.3e-06
         TIG   1 PvissisPnsgsasgGttititGtnF.....gtnssdssvtiggtpctvtasvsst 51 
                 P i+ i P+ g++    titi+G +F     ++   ++ +++g  + t++ s ss 
  KOO24450.1 153 PHIRRILPTGGPTLPAYTITIRGVGFggmdgTSMPYVPLCRVGQRAGTII-SMSSR 207
                 89***********99************99977777788999999999988.44443 PP

  == domain 3  score: -0.7 bits;  conditional E-value: 0.083
         TIG  18 tititGtnFgtnssdssvtigg 39 
                 ++ ++G nF++ ++d+  +   
  KOO24450.1 260 RLALNGVNFDDGTPDPAAYMAQ 281
                 67789****9999988777655 PP

  == domain 4  score: 17.7 bits;  conditional E-value: 1.6e-07
         TIG   7 sPnsgsasgGttititGtnF...gtnssdssvtiggtpctvta....svssttlvcttPpgp 61 
                  P  g++sgGtt++++G +F   +   s+ ++++    ++ +       s+t+l+c +P+ +
  KOO24450.1 302 LPVGGPTSGGTTVNVRGEGFlgfDGLPSTARCKFEIVGVVMIGrvteIRSDTELACFVPAQV 363
                 57889******************8888888888888888777777779999****9999987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (379 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       226  (0.0126053); expected 358.6 (0.02)
Passed bias filter:                      188  (0.0104858); expected 358.6 (0.02)
Passed Vit filter:                         9  (0.00050198); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.28s 00:00:00.73 Elapsed: 00:00:00.44
# Mc/sec: 2570.60
//
Query:       KOO24451.1  [L=293]
Description: hypothetical protein Ctob_003211, partial [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.23   10.3   5.3       0.37    9.6   5.3    1.2  1  EP400_N   E1A-binding protein p400, N-terminal


Domain annotation for each model (and alignments):
>> EP400_N  E1A-binding protein p400, N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   5.3   2.1e-05      0.37     232     326 ..      86     178 ..      74     185 .. 0.84

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 2.1e-05
     EP400_N 232 tGGtihhlGpqspvaaGaslqalgspghittsnlppqissiiqGqlarplvfektaqgvvaGvggaaasfgitssipptspsrasvpqGlsslpl 326
                    +  hl   + v++  s + ++ p+  t  + pp   si+       l  e t ++ v+Gv ++ + ++++ ++pp  p    +p+G +++pl
  KOO24451.1  86 NTTAALHLTEGAVVGTPGSPRCIARPSNQTDVSTPPSTNSILGNGTNVSLATEMTVNVNVTGVVNT-TNITFPPAVPPPLPPG-WAPNGTAENPL 178
                 444556899999999999999*********************9999999**************999.7788888888877754.46889999998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (293 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       298  (0.0166211); expected 358.6 (0.02)
Passed bias filter:                      205  (0.011434); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.26s 00:00:00.68 Elapsed: 00:00:00.40
# Mc/sec: 2192.94
//
Query:       KOO24452.1  [L=1937]
Description: expressed unknown protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.9e-95  313.4 119.4    2.5e-13   50.4   2.6   10.5 10  VCBS             Repeat domain in Vibrio, Colwellia, Bradyrhi
    1.4e-46  156.2 113.1    3.2e-05   24.0   1.9   11.6 11  FG-GAP           FG-GAP repeat
    1.5e-12   47.0  63.2    3.9e-07   29.7   4.3    8.5  7  Ephrin_rec_like  Putative ephrin-receptor like
    9.1e-06   25.8  30.1         43    4.4   0.0   11.0 11  Dockerin_1       Dockerin type I domain


Domain annotation for each model (and alignments):
>> VCBS  Repeat domain in Vibrio, Colwellia, Bradyrhizobium and Shewanella
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.4   2.6   5.5e-17   2.5e-13       1      60 [.     226     285 ..     226     286 .. 0.90
   2 !   48.0   6.7   3.2e-16   1.4e-12       1      60 [.     275     334 ..     275     335 .. 0.88
   3 !   47.1   9.4   5.9e-16   2.6e-12       1      60 [.     324     383 ..     324     384 .. 0.86
   4 !   40.8   5.8   5.7e-14   2.5e-10       1      60 [.     373     432 ..     373     433 .. 0.86
   5 !   44.6   6.2   3.5e-15   1.6e-11       1      60 [.     422     481 ..     422     482 .. 0.87
   6 !   27.6   0.6   7.5e-10   3.3e-06      17      60 ..     488     530 ..     481     531 .. 0.80
   7 !   50.4   5.2   5.5e-17   2.5e-13       1      60 [.     520     579 ..     520     580 .. 0.87
   8 !   47.7   2.6   3.8e-16   1.7e-12       1      60 [.     569     631 ..     569     632 .. 0.84
   9 !   49.1   5.3   1.4e-16   6.2e-13       1      60 [.     621     680 ..     621     681 .. 0.88
  10 !   49.8   5.2   8.6e-17   3.9e-13       1      60 [.     670     729 ..     670     730 .. 0.88

  Alignments for each domain:
  == domain 1  score: 50.4 bits;  conditional E-value: 5.5e-17
        VCBS   1 DldgDGrlDlvvand.gglrvyrnngdGtftdvtktslgg.sgggtgvavgDlDgDGdlDll 60 
                 D+dgDG+lD++++n+ ++ rv++n gdGtf  +t+ +l++ s + +++a++D+DgDGdlD+l
  KOO24452.1 226 DVDGDGHLDVLLGNSvSPSRVLLNAGDGTF--PTSFELPSgSANTWSIAAADVDGDGDLDVL 285
                 9*************76*********99987..788877775778889*************98 PP

  == domain 2  score: 48.0 bits;  conditional E-value: 3.2e-16
        VCBS   1 DldgDGrlDlvvan.dgglrvyrnngdGtftdvtktslgg.sgggtgvavgDlDgDGdlDll 60 
                 D+dgDG+lD++++n  ++ rv++n gdGtf  +t+++l+g s + +++a++D+DgDGdlD+l
  KOO24452.1 275 DVDGDGDLDVLLGNyGSPSRVLLNAGDGTF--PTSIELPGgSADTRSIAAADVDGDGDLDVL 334
                 9*************5588*******99987..78888888466667**************98 PP

  == domain 3  score: 47.1 bits;  conditional E-value: 5.9e-16
        VCBS   1 DldgDGrlDlvvand.gglrvyrnngdGtftdvtktslgg.sgggtgvavgDlDgDGdlDll 60 
                 D+dgDG+lD++++nd g+ rv++n gdGtf  +t+++l++ + + +++a++D+DgDGdlD+l
  KOO24452.1 324 DVDGDGDLDVLLGNDgGSSRVLLNAGDGTF--PTSITLPDgDANTYSIAAADVDGDGDLDVL 383
                 9************95499*******99987..67777777366666**************98 PP

  == domain 4  score: 40.8 bits;  conditional E-value: 5.7e-14
        VCBS   1 DldgDGrlDlvvan.dgglrvyrnngdGtftdvtktslgg.sgggtgvavgDlDgDGdlDll 60 
                 D+dgDG+lD++++n  ++ +v++n g Gtf  +t+++l+g s + +++a++D+D DGdlD+l
  KOO24452.1 373 DVDGDGDLDVLLGNyGSPCQVLLNAGGGTF--PTSITLPGgSADTYSIAAADVDDDGDLDVL 432
                 9*************5588*******98877..67776666377777**************98 PP

  == domain 5  score: 44.6 bits;  conditional E-value: 3.5e-15
        VCBS   1 DldgDGrlDlvvan.dgglrvyrnngdGtftdvtktslgg.sgggtgvavgDlDgDGdlDll 60 
                 D+d DG+lD++++n +++ rv++n g+Gtf  +t+++l+g + +  ++a++D+DgDGdlD+l
  KOO24452.1 422 DVDDDGDLDVLLGNdSSPSRVLLNAGNGTF--PTSIELPGgDVNTLSIAAADVDGDGDLDVL 481
                 9************95699*******99986..78888888355555**************98 PP

  == domain 6  score: 27.6 bits;  conditional E-value: 7.5e-10
        VCBS  17 glrvyrnngdGtftdvtktslgg.sgggtgvavgDlDgDGdlDll 60 
                 + rv++n g Gtf  +t+++l+g s + +++a++D+DgDGdlD+l
  KOO24452.1 488 PSRVLLNAGGGTF--PTSITLPGgSADTYSIAAADVDGDGDLDVL 530
                 5789999988876..67776666377777**************98 PP

  == domain 7  score: 50.4 bits;  conditional E-value: 5.5e-17
        VCBS   1 DldgDGrlDlvvand.gglrvyrnngdGtftdvtktslgg.sgggtgvavgDlDgDGdlDll 60 
                 D+dgDG+lD++++nd ++ rv++n gdGtf  +t+++l++ s + +++a++D+DgDGdlD+l
  KOO24452.1 520 DVDGDGDLDVLLGNDgSPSRVLLNAGDGTF--PTSIELPSgSANTYSIAAADVDGDGDLDVL 579
                 9************96377*******99987..78887777466677**************98 PP

  == domain 8  score: 47.7 bits;  conditional E-value: 3.8e-16
        VCBS   1 DldgDGrlDlvvan.dgglrvyrnngdGtft.dvtktslggsgggt.gvavgDlDgDGdlDll 60 
                 D+dgDG+lD++++n  ++ rv++n gdG f  +++ ++l+g+ ++t ++a++D+DgDGdlD+l
  KOO24452.1 569 DVDGDGDLDVLLGNfGSPSRVLLNAGDGIFPtSIELPELPGGSAYTsSMAAADVDGDGDLDVL 631
                 9*************7799**********98623455677776666648*************98 PP

  == domain 9  score: 49.1 bits;  conditional E-value: 1.4e-16
        VCBS   1 DldgDGrlDlvvan.dgglrvyrnngdGtftdvtktslgg.sgggtgvavgDlDgDGdlDll 60 
                 D+dgDG+lD++++n  ++ rv++n gdGtf  +t+++l+g s +  ++a++D+DgDGdlD+l
  KOO24452.1 621 DVDGDGDLDVLLGNyGSSSRVLLNAGDGTF--PTSIELPGgSADTLSIAAADVDGDGDLDVL 680
                 9*************5688*******99987..78888888455666**************98 PP

  == domain 10  score: 49.8 bits;  conditional E-value: 8.6e-17
        VCBS   1 DldgDGrlDlvvan.dgglrvyrnngdGtftdvtktslggsgggt.gvavgDlDgDGdlDll 60 
                 D+dgDG+lD++++n +++ +v++n gdGtf  +t+++l+g+ ++t ++a++D+DgDGdlD+l
  KOO24452.1 670 DVDGDGDLDVLLGNfNSSSVVLLNAGDGTF--PTSIELPGGSAYTrSIAAADVDGDGDLDVL 729
                 9*************8888999999999976..788988885555549*************98 PP

>> FG-GAP  FG-GAP repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.5   2.6   1.8e-07   0.00081       4      22 ..     221     239 ..     218     253 .. 0.84
   2 !   24.0   1.9   7.1e-09   3.2e-05       2      29 ..     268     291 ..     267     297 .. 0.88
   3 !   18.9   4.1   2.7e-07    0.0012       3      29 ..     318     340 ..     317     346 .. 0.85
   4 !   21.6   3.5   3.8e-08   0.00017       2      29 ..     366     389 ..     365     400 .. 0.89
   5 !   15.1   3.6   4.2e-06     0.019       3      28 ..     416     437 ..     415     448 .. 0.85
   6 !   18.2   2.5   4.4e-07     0.002       4      23 ..     466     488 ..     464     500 .. 0.79
   7 !   21.4   3.5   4.6e-08   0.00021       3      29 ..     514     536 ..     513     542 .. 0.89
   8 !   21.5   3.0   4.2e-08   0.00019       2      22 ..     562     582 ..     561     594 .. 0.84
   9 !   21.4   1.6   4.4e-08    0.0002       3      29 ..     615     637 ..     613     643 .. 0.87
  10 !   15.7   5.2   2.8e-06     0.012       4      22 ..     665     683 ..     664     696 .. 0.86
  11 !   19.3   3.7   2.1e-07   0.00093       3      29 ..     713     735 ..     711     739 .. 0.87

  Alignments for each domain:
  == domain 1  score: 19.5 bits;  conditional E-value: 1.8e-07
                 SEEEESTSSSSS-EEEEEE CS
      FG-GAP   4 slavgDvNGDGyaDLavGA 22 
                 s+a++Dv+GDG+ D+++G 
  KOO24452.1 221 SIAAADVDGDGHLDVLLGN 239
                 89****************4 PP

  == domain 2  score: 24.0 bits;  conditional E-value: 7.1e-09
                 TSSEEEESTSSSSS-EEEEEETT-ETCS CS
      FG-GAP   2 GyslavgDvNGDGyaDLavGApeskgga 29 
                  +s+a++Dv+GDG  D+++G    ++g+
  KOO24452.1 268 TWSIAAADVDGDGDLDVLLG----NYGS 291
                 69******************....7765 PP

  == domain 3  score: 18.9 bits;  conditional E-value: 2.7e-07
                 SSEEEESTSSSSS-EEEEEETT-ETCS CS
      FG-GAP   3 yslavgDvNGDGyaDLavGApeskgga 29 
                  s+a++Dv+GDG  D+++G    ++g+
  KOO24452.1 318 RSIAAADVDGDGDLDVLLG----NDGG 340
                 599****************....5554 PP

  == domain 4  score: 21.6 bits;  conditional E-value: 3.8e-08
                 TSSEEEESTSSSSS-EEEEEETT-ETCS CS
      FG-GAP   2 GyslavgDvNGDGyaDLavGApeskgga 29 
                  ys+a++Dv+GDG  D+++G    ++g+
  KOO24452.1 366 TYSIAAADVDGDGDLDVLLG----NYGS 389
                 69******************....6664 PP

  == domain 5  score: 15.1 bits;  conditional E-value: 4.2e-06
                 SSEEEESTSSSSS-EEEEEETT-ETC CS
      FG-GAP   3 yslavgDvNGDGyaDLavGApeskgg 28 
                 ys+a++Dv+ DG  D+++G    +++
  KOO24452.1 416 YSIAAADVDDDGDLDVLLG----NDS 437
                 9******************....443 PP

  == domain 6  score: 18.2 bits;  conditional E-value: 4.4e-07
                 SEEEESTSSSSS-EEEEEE...T CS
      FG-GAP   4 slavgDvNGDGyaDLavGA...p 23 
                 s+a++Dv+GDG  D+++G    p
  KOO24452.1 466 SIAAADVDGDGDLDVLLGNfisP 488
                 89****************65543 PP

  == domain 7  score: 21.4 bits;  conditional E-value: 4.6e-08
                 SSEEEESTSSSSS-EEEEEETT-ETCS CS
      FG-GAP   3 yslavgDvNGDGyaDLavGApeskgga 29 
                 ys+a++Dv+GDG  D+++G    ++g+
  KOO24452.1 514 YSIAAADVDGDGDLDVLLG----NDGS 536
                 9******************....7765 PP

  == domain 8  score: 21.5 bits;  conditional E-value: 4.2e-08
                 TSSEEEESTSSSSS-EEEEEE CS
      FG-GAP   2 GyslavgDvNGDGyaDLavGA 22 
                  ys+a++Dv+GDG  D+++G 
  KOO24452.1 562 TYSIAAADVDGDGDLDVLLGN 582
                 69******************4 PP

  == domain 9  score: 21.4 bits;  conditional E-value: 4.4e-08
                 SSEEEESTSSSSS-EEEEEETT-ETCS CS
      FG-GAP   3 yslavgDvNGDGyaDLavGApeskgga 29 
                 +s a++Dv+GDG  D+++G    ++g+
  KOO24452.1 615 SSMAAADVDGDGDLDVLLG----NYGS 637
                 899****************....7775 PP

  == domain 10  score: 15.7 bits;  conditional E-value: 2.8e-06
                 SEEEESTSSSSS-EEEEEE CS
      FG-GAP   4 slavgDvNGDGyaDLavGA 22 
                 s+a++Dv+GDG  D+++G 
  KOO24452.1 665 SIAAADVDGDGDLDVLLGN 683
                 79****************3 PP

  == domain 11  score: 19.3 bits;  conditional E-value: 2.1e-07
                 SSEEEESTSSSSS-EEEEEETT-ETCS CS
      FG-GAP   3 yslavgDvNGDGyaDLavGApeskgga 29 
                  s+a++Dv+GDG  D+++G    ++g+
  KOO24452.1 713 RSIAAADVDGDGDLDVLLG----NDGG 735
                 699****************....6664 PP

>> Ephrin_rec_like  Putative ephrin-receptor like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.1       0.8   3.6e+03      28      35 ..     759     766 ..     753     772 .. 0.76
   2 ?   -2.1   7.4      0.78   3.5e+03      11      48 .]     776     811 ..     770     811 .. 0.78
   3 !    4.9   3.1     0.005        22       4      41 ..     785     821 ..     783     823 .. 0.82
   4 !   12.9   9.5   1.5e-05     0.069      10      34 ..     823     847 ..     818     860 .. 0.84
   5 ?   -2.1   5.4      0.74   3.3e+03      12      24 ..     894     906 ..     847     927 .. 0.72
   6 !   26.0   3.2   1.2e-09   5.6e-06      13      48 .]    1134    1172 ..    1128    1172 .. 0.96
   7 !   29.7   4.3   8.6e-11   3.9e-07       9      48 .]    1202    1251 ..    1199    1251 .. 0.95

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 0.8
  Ephrin_rec_like  28 ClaCPlgt 35 
                      C +CP+  
       KOO24452.1 759 CVRCPAPS 766
                      99999654 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 0.78
  Ephrin_rec_like  11 CipCprgtYqneegqlsClaCPlgtttkkpgatsesdC 48 
                      C +C  +t q   g+++C aC + ++    gat  + C
       KOO24452.1 776 CYECDENT-QLDPGSGACAACTE-GSERFLGATRCTRC 811
                      999****9.9999********75.45666666666666 PP

  == domain 3  score: 4.9 bits;  conditional E-value: 0.005
  Ephrin_rec_like   4 sntgletCipCprgtYqneegqlsClaCPlgtttkkpg 41 
                      ++ g+  C +C  g+     g + C++CP g++   pg
       KOO24452.1 785 LDPGSGACAACTEGS-ERFLGATRCTRCPVGKRHAAPG 821
                      6678889*******9.6789*********998877666 PP

  == domain 4  score: 12.9 bits;  conditional E-value: 1.5e-05
  Ephrin_rec_like  10 tCipCprgtYqneegqlsClaCPlg 34 
                       CipC+ gt+ +++g+++C++C +g
       KOO24452.1 823 ACIPCSPGTFTSTSGSTACQPCTPG 847
                      6*********************765 PP

  == domain 5  score: -2.1 bits;  conditional E-value: 0.74
  Ephrin_rec_like  12 ipCprgtYqneeg 24 
                       pCp g Y+n+ g
       KOO24452.1 894 VPCPGGKYNNRTG 906
                      3555555555555 PP

  == domain 6  score: 26.0 bits;  conditional E-value: 1.2e-09
  Ephrin_rec_like   13 pCprgtYqn...eegqlsClaCPlgtttkkpgatsesdC 48  
                       +C+ g+Y++    ++q++Cl+CP+  tt  ++at++s+C
       KOO24452.1 1134 ACEQGFYNPntnAASQTACLRCPEFSTTNGTAATNVSEC 1172
                       7*******998899************************* PP

  == domain 7  score: 29.7 bits;  conditional E-value: 8.6e-11
  Ephrin_rec_like    9 etCipCprgtYqn.........eegqlsClaCP.lgtttkkpgatsesdC 48  
                       ++C pC++gtY++           g ++Cl CP ++ttt+++ga s+s+C
       KOO24452.1 1202 VQCAPCKIGTYKDwtgenlfrnPLGPQKCLDCPvPQTTTEQEGADSISQC 1251
                       68**************99999999************************** PP

>> Dockerin_1  Dockerin type I domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.5   0.0     0.019        85      29      45 ..     217     233 ..     201     236 .. 0.82
   2 ?    2.6   0.0     0.035   1.6e+02      33      46 ..     270     283 ..     257     285 .. 0.80
   3 ?    4.2   0.1     0.011        50      27      46 ..     313     332 ..     296     334 .. 0.83
   4 ?    3.7   0.3     0.016        74      28      46 ..     363     381 ..     346     383 .. 0.83
   5 ?    1.7   0.1     0.068   3.1e+02      27      46 ..     411     430 ..     395     432 .. 0.83
   6 ?    3.0   0.1     0.026   1.1e+02      30      46 ..     463     479 ..     444     481 .. 0.81
   7 !    4.4   0.0    0.0096        43      26      46 ..     508     528 ..     490     530 .. 0.83
   8 ?    3.9   0.1     0.014        61      27      46 ..     558     577 ..     542     579 .. 0.83
   9 ?    3.8   0.0     0.015        65      31      46 ..     614     629 ..     602     631 .. 0.81
  10 ?    3.5   0.1     0.018        81      27      46 ..     659     678 ..     642     680 .. 0.82
  11 ?    2.8   0.1     0.031   1.4e+02      33      46 ..     714     727 ..     703     729 .. 0.79

  Alignments for each domain:
  == domain 1  score: 3.5 bits;  conditional E-value: 0.019
                 TSCCCHGGGSTT-SSCE CS
  Dockerin_1  29 ssssngkaaDvNgDGrv 45 
                  s+   +aaDv+gDG  
  KOO24452.1 217 ASTGSIAAADVDGDGHL 233
                 56677899******976 PP

  == domain 2  score: 2.6 bits;  conditional E-value: 0.035
                 CHGGGSTT-SSCES CS
  Dockerin_1  33 ngkaaDvNgDGrvn 46 
                   +aaDv+gDG  +
  KOO24452.1 270 SIAAADVDGDGDLD 283
                 56899*****9765 PP

  == domain 3  score: 4.2 bits;  conditional E-value: 0.011
                 BTTSCCCHGGGSTT-SSCES CS
  Dockerin_1  27 gqssssngkaaDvNgDGrvn 46 
                 g+ ++   +aaDv+gDG  +
  KOO24452.1 313 GSADTRSIAAADVDGDGDLD 332
                 667788899********865 PP

  == domain 4  score: 3.7 bits;  conditional E-value: 0.016
                 TTSCCCHGGGSTT-SSCES CS
  Dockerin_1  28 qssssngkaaDvNgDGrvn 46 
                 + ++   +aaDv+gDG  +
  KOO24452.1 363 DANTYSIAAADVDGDGDLD 381
                 56677889********865 PP

  == domain 5  score: 1.7 bits;  conditional E-value: 0.068
                 BTTSCCCHGGGSTT-SSCES CS
  Dockerin_1  27 gqssssngkaaDvNgDGrvn 46 
                 g+ ++   +aaDv+ DG  +
  KOO24452.1 411 GSADTYSIAAADVDDDGDLD 430
                 6677888999*****99765 PP

  == domain 6  score: 3.0 bits;  conditional E-value: 0.026
                 SCCCHGGGSTT-SSCES CS
  Dockerin_1  30 sssngkaaDvNgDGrvn 46 
                 ++   +aaDv+gDG  +
  KOO24452.1 463 NTLSIAAADVDGDGDLD 479
                 5567789******9765 PP

  == domain 7  score: 4.4 bits;  conditional E-value: 0.0096
                 EBTTSCCCHGGGSTT-SSCES CS
  Dockerin_1  26 egqssssngkaaDvNgDGrvn 46 
                 +g+ ++   +aaDv+gDG  +
  KOO24452.1 508 GGSADTYSIAAADVDGDGDLD 528
                 5677888999********865 PP

  == domain 8  score: 3.9 bits;  conditional E-value: 0.014
                 BTTSCCCHGGGSTT-SSCES CS
  Dockerin_1  27 gqssssngkaaDvNgDGrvn 46 
                 g+ ++   +aaDv+gDG  +
  KOO24452.1 558 GSANTYSIAAADVDGDGDLD 577
                 566777889********865 PP

  == domain 9  score: 3.8 bits;  conditional E-value: 0.015
                 CCCHGGGSTT-SSCES CS
  Dockerin_1  31 ssngkaaDvNgDGrvn 46 
                 +s  +aaDv+gDG  +
  KOO24452.1 614 TSSMAAADVDGDGDLD 629
                 67889********865 PP

  == domain 10  score: 3.5 bits;  conditional E-value: 0.018
                 BTTSCCCHGGGSTT-SSCES CS
  Dockerin_1  27 gqssssngkaaDvNgDGrvn 46 
                 g+ ++   +aaDv+gDG  +
  KOO24452.1 659 GSADTLSIAAADVDGDGDLD 678
                 5566777899*******865 PP

  == domain 11  score: 2.8 bits;  conditional E-value: 0.031
                 CHGGGSTT-SSCES CS
  Dockerin_1  33 ngkaaDvNgDGrvn 46 
                   +aaDv+gDG  +
  KOO24452.1 714 SIAAADVDGDGDLD 727
                 6789******9765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1937 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       669  (0.0373138); expected 358.6 (0.02)
Passed bias filter:                      429  (0.0239277); expected 358.6 (0.02)
Passed Vit filter:                        64  (0.00356964); expected 17.9 (0.001)
Passed Fwd filter:                        14  (0.000780858); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 1.13u 0.27s 00:00:01.40 Elapsed: 00:00:00.49
# Mc/sec: 11986.05
//
Query:       KOO24453.1  [L=216]
Description: putative mitochondrial carrier protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    9.4e-37  124.8   1.7      1e-16   60.6   0.0    4.1  4  Mito_carr        Mitochondrial carrier protein
     0.0095   15.1   0.0       0.08   12.1   0.0    2.0  2  Serine_protease  Gammaproteobacterial serine protease


Domain annotation for each model (and alignments):
>> Mito_carr  Mitochondrial carrier protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.4   0.0     0.016   1.4e+02      75      93 ..       2      20 ..       1      23 [. 0.85
   2 !   60.6   0.0   1.1e-20     1e-16       7      93 ..      33     115 ..      28     128 .. 0.94
   3 !   32.2   0.0   8.1e-12   7.3e-08       3      38 ..     136     171 ..     134     172 .. 0.92
   4 !   29.9   0.0   4.5e-11     4e-07      54      95 ..     167     208 ..     166     210 .. 0.94

  Alignments for each domain:
  == domain 1  score: 2.4 bits;  conditional E-value: 0.016
                HHHHHHHHHHHHHHHHHHH CS
   Mito_carr 75 vapasalkfvlyetlkrll 93
                ++p ++l+f+lye  ++ +
  KOO24453.1  2 SVPGTVLYFSLYEAARDAI 20
                68999********999876 PP

  == domain 2  score: 60.6 bits;  conditional E-value: 1.1e-20
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSTTTSCSSHHHHHHHHHHHHHHHGGGTTHHHHHHHHHHHHHHHHHHHHHHHHHH CS
   Mito_carr   7 kellaGglagavatlvttPldvvKtrlqtqkksskksksaaildvlkkiykeeGlrglyrGllpnllrvapasalkfvlyetlkrll 93 
                 + l+aGg a +++++++ P+++++trlq+++   ++    +++     ++k eG  +l++Gl p+l r +p s+l++++ye lk  l
  KOO24453.1  33 APLIAGGGARLLTATIVSPVELMRTRLQSSQALRSE----GMIGGAMALVKREGWGALWKGLPPTLWRDVPFSMLYWTVYELLKARL 115
                 569**************************9999876....39*****************************************9876 PP

  == domain 3  score: 32.2 bits;  conditional E-value: 8.1e-12
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC CS
   Mito_carr   3 lsvlkellaGglagavatlvttPldvvKtrlqtqkk 38 
                 l++++++++G+++ga+a+++ttP+dv+Ktr q++++
  KOO24453.1 136 LEPVHSFACGAASGAFAAFLTTPFDVLKTRHQIAQR 171
                 67899***************************9875 PP

  == domain 4  score: 29.9 bits;  conditional E-value: 4.5e-11
                 HHHHHHHHHGGGTTHHHHHHHHHHHHHHHHHHHHHHHHHHCT CS
   Mito_carr  54 kiykeeGlrglyrGllpnllrvapasalkfvlyetlkrlllk 95 
                 +i + eG+ +l+ Gl+p+l +vap+ a++ ++ye+ k+++ +
  KOO24453.1 167 QIAQREGVGALFAGLGPRLAKVAPSCAIMIASYEMGKTFFRQ 208
                 7999**********************************9975 PP

>> Serine_protease  Gammaproteobacterial serine protease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.9   0.0     0.023   2.1e+02      19      46 ..      47      77 ..      43      89 .. 0.80
   2 !   12.1   0.0   8.9e-06      0.08     169     205 ..     134     170 ..     116     212 .. 0.79

  Alignments for each domain:
  == domain 1  score: 0.9 bits;  conditional E-value: 0.023
  Serine_protease 19 altsPfkalLtnlqkdgsvlpsaysgG...l 46
                     ++ sP++ + t+lq ++++ + ++ gG   l
       KOO24453.1 47 TIVSPVELMRTRLQSSQALRSEGMIGGamaL 77
                     6789***********9999988888885333 PP

  == domain 2  score: 12.1 bits;  conditional E-value: 8.9e-06
  Serine_protease 169 indelynkllaGalsGviAtvlttifnsykDkkllas 205
                       + e ++ ++ Ga sG+ A++ltt+f  +k ++ +a 
       KOO24453.1 134 AQLEPVHSFACGAASGAFAAFLTTPFDVLKTRHQIAQ 170
                      5556678899****************99998876655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (216 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       225  (0.0125495); expected 358.6 (0.02)
Passed bias filter:                      179  (0.00998383); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.38u 0.25s 00:00:00.63 Elapsed: 00:00:00.39
# Mc/sec: 1669.19
//
Query:       KOO24454.1  [L=215]
Description: hypothetical protein Ctob_003204 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
        0.3   11.7   0.3         95    3.6   0.0    3.3  3  DUF4682   Domain of unknown function (DUF4682)


Domain annotation for each model (and alignments):
>> DUF4682  Domain of unknown function (DUF4682)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.6   0.0    0.0053        95      48      79 ..       2      33 ..       1      41 [. 0.88
   2 ?    2.2   0.0     0.015   2.7e+02      46      79 ..      49      82 ..      43      92 .. 0.86
   3 ?    1.7   0.0      0.02   3.6e+02      40      72 ..     141     173 ..      91     190 .. 0.58

  Alignments for each domain:
  == domain 1  score: 3.6 bits;  conditional E-value: 0.0053
     DUF4682 48 llgkkarssnkgkrnkapqkavppeakrsslk 79
                l+gk++    ++ r + p+ + + ++++s+++
  KOO24454.1  2 LVGKMPSPALRSTRLGLPKFPSSTSRSPSPST 33
                9********************99999999876 PP

  == domain 2  score: 2.2 bits;  conditional E-value: 0.015
     DUF4682 46 hLllgkkarssnkgkrnkapqkavppeakrsslk 79
                 +l+gk +    ++ r + p+ + + ++++s+++
  KOO24454.1 49 SMLVGKVPSPALRSTRLGLPSLPSSTSRSPSPST 82
                689****************999999998888876 PP

  == domain 3  score: 1.7 bits;  conditional E-value: 0.02
     DUF4682  40 pssvvNhLllgkkarssnkgkrnkapqkavppe 72 
                 +s+  + +l+gk +    ++ r +  + +   +
  KOO24454.1 141 TSPPGSSMLVGKVPFPALSSTRLGLLSFPSNTS 173
                 333555566666666666666666555555444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (215 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       167  (0.00931452); expected 358.6 (0.02)
Passed bias filter:                       89  (0.00496402); expected 358.6 (0.02)
Passed Vit filter:                         7  (0.000390429); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.24s 00:00:00.64 Elapsed: 00:00:00.40
# Mc/sec: 1612.83
//
Query:       KOO24455.1  [L=190]
Description: hypothetical protein Ctob_003207 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (190 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       452  (0.0252106); expected 358.6 (0.02)
Passed bias filter:                      316  (0.0176251); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.41u 0.24s 00:00:00.64 Elapsed: 00:00:00.41
# Mc/sec: 1375.13
//
Query:       KOO24456.1  [L=458]
Description: hypothetical protein Ctob_003206, partial [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.9e-05   24.5   0.0    7.6e-05   23.2   0.0    1.7  1  SET              SET domain
  ------ inclusion threshold ------
        7.6    6.4   9.0       0.15   11.9   0.7    2.5  2  Gly-zipper_OmpA  Glycine-zipper domain


Domain annotation for each model (and alignments):
>> SET  SET domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.2   0.0   8.5e-09   7.6e-05       1     169 []      36     232 ..      36     232 .. 0.63

  Alignments for each domain:
  == domain 1  score: 23.2 bits;  conditional E-value: 8.5e-09
                 SCEEEESSXBXTTXEEEEEE............ECCEECHHHHHHHHHH.......................HTEEEEEXGGXX...GGSXHHHHHHHTT CS
                 xxxxxxxxxxxxxxxxxxxx............xxxxxxxxxxxxxxxx.......................xxxxxxxxxxxx...xxxxxxxxxxxxx RF
         SET   1 GrGvfAtedIpkgeficeyp............eeiiltkdeadksele.......................aylfslpeapkn...laftkelakasas 61 
                 GrG+fA  +I+ g++++++p            +  ++                                  +++++l  +p+    + +t ++ ++   
  KOO24456.1  36 GRGLFAAAPIANGALLLSVPlshavvpagplaD--LVP---------TrcsrllalaltvlheihvksprdPFFEMLAVSPLPatpSLWTHDAIAELEG 123
                 9***************98776444443322211..222.........1333445555777777778888887777766442223345554444444444 PP

                 SSHHHHHHHHHHHHHHHHHHTHHHHHHHXTTTSX............XXHCCCCCHCCCHEEEETEEEEEECCCGTTGGGCEEXS..SSSEEEEEEEE.T CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx............xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxx.x RF
         SET  62 tllqklakdqkqaekedtdaalkasskaesdlna............skpeagafsaiagysidaralksgngagplarflNHsC..dpNcnltvqnv.l 145
                 t  +++    + +  + ++              +             + e+ga+s++ ++  d+  ++ +    pl ++lN     d  c +++++v +
  KOO24456.1 124 TAAGDDYLPPHTRVRSLFAQ-------------ClawvtsralfgrVNYEQGAASLWPYLRADGPPTANSLILLPLFDLLNTASagDAIC-ASLRRVdS 208
                 44444444444444444333.............0333334444444556666668999999998888888888********654345555.66666668 PP

                 TSSEEEEEESSXBXTTEEEEEXTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxx RF
         SET 146 rgprvavfAtrdIkkGeEltidYg 169
                     v+v+Atr I++ +E++i+Yg
  KOO24456.1 209 PTAVVEVRATRAIAATDEILITYG 232
                 999********************8 PP

>> Gly-zipper_OmpA  Glycine-zipper domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   2.1       0.9   8.1e+03      12      22 ..     273     283 ..     273     286 .. 0.68
   2 ?   11.9   0.7   1.7e-05      0.15      22      42 ..     380     400 ..     378     402 .. 0.89

  Alignments for each domain:
  == domain 1  score: -3.3 bits;  conditional E-value: 0.9
  Gly-zipper_OmpA  12 AaaGAavGait 22 
                      A aGA++ a+ 
       KOO24456.1 273 AKAGAVLSAAN 283
                      55888887764 PP

  == domain 2  score: 11.9 bits;  conditional E-value: 1.7e-05
  Gly-zipper_OmpA  22 tGsaGtGAaiGAasGavaGll 42 
                      +G+a +GA +GA+sG  aG+ 
       KOO24456.1 380 EGHAEEGAVVGAGSGRSAGSS 400
                      68999***********99985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (458 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       288  (0.0160634); expected 358.6 (0.02)
Passed bias filter:                      230  (0.0128284); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.47u 0.23s 00:00:00.70 Elapsed: 00:00:00.39
# Mc/sec: 3559.91
//
Query:       KOO24457.1  [L=343]
Description: hypothetical protein Ctob_003209 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.9e-06   26.3   1.1       0.19   11.8   0.1    3.5  3  TIG       IPT/TIG domain


Domain annotation for each model (and alignments):
>> TIG  IPT/TIG domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.8   0.1   1.1e-05      0.19       2      28 ..       8      33 ..       7      88 .. 0.78
   2 ?    1.8   0.0     0.015   2.6e+02      48      76 ..     192     224 ..     179     235 .. 0.66
   3 !    9.4   0.0   5.9e-05       1.1       8      26 ..     252     270 ..     248     326 .. 0.88

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 1.1e-05
         TIG  2 vissisPnsgsasgGttititGtnFgt 28
                +is +sP  +s+ g ttit++G+++ +
  KOO24457.1  8 TISHVSPVGSSTFGETTITLRGSGL-S 33
                799**********************.2 PP

  == domain 2  score: 1.8 bits;  conditional E-value: 0.015
         TIG  48 vssttlvcttPpgp...sgllnvsvlvdg.aql 76 
                 v+ + + c +Pp     +g ++++++  g   +
  KOO24457.1 192 VTRDRVQCFLPPEIhghTGRVEIQLTLEGtHFT 224
                 666677777777776767777777777664333 PP

  == domain 3  score: 9.4 bits;  conditional E-value: 5.9e-05
         TIG   8 PnsgsasgGttititGtnF 26 
                 P+ g++ gGt+i+itG + 
  KOO24457.1 252 PAGGPITGGTRIVITGEGI 270
                 7889************997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (343 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       279  (0.0155614); expected 358.6 (0.02)
Passed bias filter:                      248  (0.0138323); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.23s 00:00:00.65 Elapsed: 00:00:00.37
# Mc/sec: 2768.51
//
Query:       KOO24458.1  [L=220]
Description: hypothetical protein Ctob_003208 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.4e-06   27.5   0.0       0.07   12.9   0.0    2.1  2  Galactosyl_T  Galactosyltransferase


Domain annotation for each model (and alignments):
>> Galactosyl_T  Galactosyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.6   0.0   4.9e-06     0.089       2      33 ..      86     115 ..      85     124 .. 0.85
   2 !   12.9   0.0   3.9e-06      0.07      65     101 ..     161     195 ..     156     217 .. 0.79

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 4.9e-06
  Galactosyl_T   2 rRnaiRktWmnekeaegnriktlFlvGlsake 33 
                   rR+++R tWm         +++lF+vG+++ +
    KOO24458.1  86 RREVLRCTWMRVP-VFARDVRVLFIVGKAN-A 115
                   9*********998.46699********998.3 PP

  == domain 2  score: 12.9 bits;  conditional E-value: 3.9e-06
  Galactosyl_T  65 lKtltlllwavskvpeaklilkvDdDvyvnpdkLlsl 101
                    K +++l++a+++ +   +i+++DdDv+++p  L+  
    KOO24458.1 161 WKLVAWLQYASTQPE--PMIGRADDDVFISPRMLVAH 195
                   578899999988877..9**************99864 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (220 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       216  (0.0120475); expected 358.6 (0.02)
Passed bias filter:                      195  (0.0108762); expected 358.6 (0.02)
Passed Vit filter:                        10  (0.000557756); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.26s 00:00:00.66 Elapsed: 00:00:00.42
# Mc/sec: 1571.08
//
Query:       KOO24459.1  [L=452]
Description: hypothetical protein Ctob_003212, partial [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.14   12.6   0.1       0.14   12.6   0.1    3.0  3  cNMPbd_u2  Unstructured region on cNMP-binding protein


Domain annotation for each model (and alignments):
>> cNMPbd_u2  Unstructured region on cNMP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.1     8e-06      0.14      58     106 ..     140     186 ..     111     204 .. 0.74
   2 ?    1.6   0.4     0.019   3.4e+02      77     106 ..     241     271 ..     213     303 .. 0.71
   3 ?   -3.4   0.2      0.67   1.2e+04      91     101 ..     337     347 ..     332     371 .. 0.71

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 8e-06
   cNMPbd_u2  58 ftepskldspkseddeevlePsDPDPFLsvdldnlRsrsRRgSlAPptp 106
                 f++  +l++ ++++d    +  D DP L v++ ++R+r+RRg l  + +
  KOO24459.1 140 FASRAALHQRHERRDGA--SLRDQDPVLGVGIRKVRQRTRRGLLLAIRA 186
                 55555555555554544..446899****************98744444 PP

  == domain 2  score: 1.6 bits;  conditional E-value: 0.019
   cNMPbd_u2  77 ePsDPDPFLsvdldnlRsrsRRgSl.APptp 106
                 +  D DP L v+  ++ +rs R  l A   +
  KOO24459.1 241 RLRDQDPVLVVGVREVPQRSHRIHLlAIRAA 271
                 557999*************977555144443 PP

  == domain 3  score: -3.4 bits;  conditional E-value: 0.67
   cNMPbd_u2  91 nlRsrsRRgSl 101
                 ++R+r+RR  l
  KOO24459.1 337 EVRQRTRRLLL 347
                 58999999655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (452 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       375  (0.0209158); expected 358.6 (0.02)
Passed bias filter:                      154  (0.00858944); expected 358.6 (0.02)
Passed Vit filter:                        11  (0.000613531); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.28s 00:00:00.75 Elapsed: 00:00:00.42
# Mc/sec: 3267.13
//
Query:       KOO24460.1  [L=740]
Description: vacuolar protein 8, partial [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.1e-63  208.6  30.8    7.1e-09   35.4   0.4    8.8  8  Arm              Armadillo/beta-catenin-like repeat
      2e-08   34.1   7.8     0.0037   17.3   0.0    5.1  6  Atx10homo_assoc  Spinocerebellar ataxia type 10 protein domai
    0.00072   19.1   1.3      0.024   14.1   0.3    2.9  3  Arm_2            Armadillo-like
     0.0021   18.5  26.6      0.019   15.5   1.5    5.7  6  HEAT_EZ          HEAT-like repeat
     0.0049   17.1   0.7      0.012   15.8   0.7    1.6  1  DUF4726          Domain of unknown function (DUF4726)
     0.0088   15.8   0.2         62    3.2   0.0    4.8  5  SNAD2            Secreted Novel AID/APOBEC-like Deaminase 2


Domain annotation for each model (and alignments):
>> Arm  Armadillo/beta-catenin-like repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.7   0.0   9.1e-07    0.0027       1      40 [.     396     435 ..     396     436 .. 0.95
   2 !   35.4   0.4   2.4e-12   7.1e-09       1      40 [.     437     476 ..     437     477 .. 0.97
   3 !   32.1   0.2   2.7e-11     8e-08       1      40 [.     478     517 ..     478     518 .. 0.97
   4 !   29.9   0.3   1.3e-10   3.8e-07       1      40 [.     519     558 ..     519     559 .. 0.97
   5 !   32.6   0.1   1.8e-11   5.3e-08       1      40 [.     561     600 ..     561     601 .. 0.98
   6 !   29.0   0.1   2.4e-10   7.2e-07       1      40 [.     603     642 ..     603     643 .. 0.95
   7 !   16.2   0.2   2.7e-06    0.0081       1      40 [.     645     684 ..     645     685 .. 0.91
   8 !   33.3   0.1   1.1e-11   3.2e-08       1      40 [.     686     725 ..     686     726 .. 0.98

  Alignments for each domain:
  == domain 1  score: 17.7 bits;  conditional E-value: 9.1e-07
                 SHHHHHHHHHTTHHHHHHHHTTTSSHHHHHHHHHHHHHHT CS
         Arm   1 nsenkdavieaGavppLvrLLssedeevqeeAawALsNLa 40 
                 ++e + a+ +aG++ pLv+LL+ +d+    eAa+AL+ La
  KOO24460.1 396 DDESRVAIARAGGIVPLVALLTAQDPAAGAEAARALRSLA 435
                 578899*******************************998 PP

  == domain 2  score: 35.4 bits;  conditional E-value: 2.4e-12
                 SHHHHHHHHHTTHHHHHHHHTTTSSHHHHHHHHHHHHHHT CS
         Arm   1 nsenkdavieaGavppLvrLLssedeevqeeAawALsNLa 40 
                 n en+ ++++aGa+ pLv+L +s+ ++ +e+Aa+AL+NLa
  KOO24460.1 437 NAENRVLIVQAGAIAPLVTLVQSGTDGQKEQAAGALANLA 476
                 679************************************8 PP

  == domain 3  score: 32.1 bits;  conditional E-value: 2.7e-11
                 SHHHHHHHHHTTHHHHHHHHTTTSSHHHHHHHHHHHHHHT CS
         Arm   1 nsenkdavieaGavppLvrLLssedeevqeeAawALsNLa 40 
                 n enk ++ +aGa+ pLv+L +s+ ++ +e Aa+AL+NLa
  KOO24460.1 478 NAENKLLIAQAGAIAPLVTLVQSGTDGQKERAAGALRNLA 517
                 679************************************8 PP

  == domain 4  score: 29.9 bits;  conditional E-value: 1.3e-10
                 SHHHHHHHHHTTHHHHHHHHTTTSSHHHHHHHHHHHHHHT CS
         Arm   1 nsenkdavieaGavppLvrLLssedeevqeeAawALsNLa 40 
                 n en+ ++ +aGa+ pLv+L +s+ ++ + +A++AL+NLa
  KOO24460.1 519 NAENRVLIAQAGAIAPLVTLVQSGTDGQKVNAVAALGNLA 558
                 679************************************8 PP

  == domain 5  score: 32.6 bits;  conditional E-value: 1.8e-11
                 SHHHHHHHHHTTHHHHHHHHTTTSSHHHHHHHHHHHHHHT CS
         Arm   1 nsenkdavieaGavppLvrLLssedeevqeeAawALsNLa 40 
                 n+en+ ++ +aGa+ pLv+L +s+  + +e Aa+AL+NLa
  KOO24460.1 561 NDENRVLIAQAGAIAPLVTLVQSGTAGQKEHAASALGNLA 600
                 79*************************************8 PP

  == domain 6  score: 29.0 bits;  conditional E-value: 2.4e-10
                 SHHHHHHHHHTTHHHHHHHHTTTSSHHHHHHHHHHHHHHT CS
         Arm   1 nsenkdavieaGavppLvrLLssedeevqeeAawALsNLa 40 
                 n en  ++ +aGa+ pLv+L +s+ ++ +e+Aa+AL+NLa
  KOO24460.1 603 NAENEVLIAQAGAIAPLVTLVQSGTDGQKEPAAGALANLA 642
                 5688899********************************8 PP

  == domain 7  score: 16.2 bits;  conditional E-value: 2.7e-06
                 SHHHHHHHHHTTHHHHHHHHTTTSSHHHHHHHHHHHHHHT CS
         Arm   1 nsenkdavieaGavppLvrLLssedeevqeeAawALsNLa 40 
                 n +n+ ++ +aGa+ pLv+L +s+  +  e+Aa AL+ La
  KOO24460.1 645 NAKNRVLIAQAGAIAPLVTLVQSGTAGEMEQAADALRTLA 684
                 578********************99999999999999876 PP

  == domain 8  score: 33.3 bits;  conditional E-value: 1.1e-11
                 SHHHHHHHHHTTHHHHHHHHTTTSSHHHHHHHHHHHHHHT CS
         Arm   1 nsenkdavieaGavppLvrLLssedeevqeeAawALsNLa 40 
                 n+enk ++ +aGa+ pLv+L +s+  + +e Aa+AL+NLa
  KOO24460.1 686 NDENKVLIAQAGAISPLVTLVQSGTAGQKEYAAAALRNLA 725
                 79*************************************8 PP

>> Atx10homo_assoc  Spinocerebellar ataxia type 10 protein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.0      0.75   2.2e+03      41      69 ..     460     487 ..     426     504 .. 0.70
   2 ?    3.3   0.2     0.028        84      39      69 ..     499     528 ..     464     537 .. 0.74
   3 !   17.3   0.0   1.2e-06    0.0037       2      70 ..     547     613 ..     546     626 .. 0.91
   4 !   12.8   0.0     3e-05     0.088       2      70 ..     589     655 ..     588     678 .. 0.88
   5 ?    4.0   0.0     0.017        49       8      69 ..     637     695 ..     631     708 .. 0.74
   6 !    9.4   0.5   0.00034         1      44      69 ..     712     737 ..     686     738 .. 0.86

  Alignments for each domain:
  == domain 1  score: -1.3 bits;  conditional E-value: 0.75
  Atx10homo_assoc  41 nnPfirewailairnLlegneenqelvae 69 
                        +  +e+a  a+ nL   n+en+ l+a+
       KOO24460.1 460 GTDGQKEQAAGALANLA-VNAENKLLIAQ 487
                      44556777777777774.57788888876 PP

  == domain 2  score: 3.3 bits;  conditional E-value: 0.028
  Atx10homo_assoc  39 DdnnPfirewailairnLlegneenqelvae 69 
                      ++  +  +e+a  a+rnL   n+en+ l+a+
       KOO24460.1 499 QSGTDGQKERAAGALRNLA-LNAENRVLIAQ 528
                      45566789*********96.58899999987 PP

  == domain 3  score: 17.3 bits;  conditional E-value: 1.2e-06
  Atx10homo_assoc   2 KrelvrllgnlvyknkevqdkvreldgleliLsqcniDdnnPfirewailairnLlegneenqelvaeL 70 
                      K + v+ lgnl+y n e++  + + ++++ + +   +++     +e+a  a+ nL   n+en  l+a+ 
       KOO24460.1 547 KVNAVAALGNLAYTNDENRVLIAQAGAIAPLVTL--VQSGTAGQKEHAASALGNLAYTNAENEVLIAQA 613
                      7889**************************9865..56778899*********************9985 PP

  == domain 4  score: 12.8 bits;  conditional E-value: 3e-05
  Atx10homo_assoc   2 KrelvrllgnlvyknkevqdkvreldgleliLsqcniDdnnPfirewailairnLlegneenqelvaeL 70 
                      K++  + lgnl+y n e+   + + ++++ + +   +++  +  +e a  a+ nL   n++n+ l+a+ 
       KOO24460.1 589 KEHAASALGNLAYTNAENEVLIAQAGAIAPLVTL--VQSGTDGQKEPAAGALANLAYTNAKNRVLIAQA 655
                      6677789***********************9865..56778899**********************985 PP

  == domain 5  score: 4.0 bits;  conditional E-value: 0.017
  Atx10homo_assoc   8 llgnlvyknkevqdkvreldgleliLsqcniDdnnPfirewailairnLlegneenqelvae 69 
                       l+nl+y n +++  + + ++++ + + ++         e+a  a+r L   n en+ l+a+
       KOO24460.1 637 ALANLAYTNAKNRVLIAQAGAIAPLVTLVQS--GTAGEMEQAADALRTLA-VNDENKVLIAQ 695
                      5789999999999999999998888765544..44455677778888764.46777777776 PP

  == domain 6  score: 9.4 bits;  conditional E-value: 0.00034
  Atx10homo_assoc  44 firewailairnLlegneenqelvae 69 
                        +e+a  a+rnL  +n+en  l+a+
       KOO24460.1 712 GQKEYAAAALRNLAINNAENEFLIAQ 737
                      569*****************999986 PP

>> Arm_2  Armadillo-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.1   0.3   7.9e-06     0.024      10     180 ..     446     619 ..     436     630 .. 0.79
   2 !    9.2   0.1   0.00025      0.76      15     183 ..     492     664 ..     485     673 .. 0.81
   3 ?    3.1   0.1     0.018        55      49     167 ..     651     730 ..     579     739 .. 0.52

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 7.9e-06
       Arm_2  10 epkelekllalLkssedpliqeialltlgnsaaysvnqdiirdlggitiianllsksnaevkekalnalnnlsenvenqkkikvyvnqvckdivssplN 108
                 ++  ++ l++l++s +d    e+a  +l+n a+ + n+ +i + g i+ +  l+ +     ke+a  al nl+ n+en   i      +   +++ +  
  KOO24460.1 446 QAGAIAPLVTLVQSGTDGQK-EQAAGALANLAVNAENKLLIAQAGAIAPLVTLVQSGTDGQKERAAGALRNLALNAENRVLIAQ-AGAIAPLVTLVQSG 542
                 5566788999***9999976.556679*********************999***************************988865.45566666666666 PP

       Arm_2 109 sevQ.lagLklltnlsvtneyqhllvsy...isellsLLskGnekikvqvLkvllnlseNpamtrell.sakvlssl 180
                 ++ Q + +   l+nl+ tn+ + +l+     i+ l++L+++G    k +    l nl+  +a  + l+ +a + + l
  KOO24460.1 543 TDGQkVNAVAALGNLAYTNDENRVLIAQagaIAPLVTLVQSGTAGQKEHAASALGNLAYTNAENEVLIaQAGAIAPL 619
                 677735688999****9999999987643339999999999999999999999999997766666655244455555 PP

  == domain 2  score: 9.2 bits;  conditional E-value: 0.00025
       Arm_2  15 ekllalLkssedpliqeialltlgnsaaysvnqdiirdlggitiianllsksnaevkekalnalnnlsenvenqkkikvyvnqvckdivssplNsevQl 113
                 + l++l++s +d   +e+a  +l n a  + n+ +i + g i+ +  l+ +     k++a+ al nl+  +++++ + +    +   +++ +  ++ Q 
  KOO24460.1 492 APLVTLVQSGTDGQ-KERAAGALRNLALNAENRVLIAQAGAIAPLVTLVQSGTDGQKVNAVAALGNLAYTNDENRVLIAQAGAIAPLVTLVQSGTAGQK 589
                 66899999999975.7888889********************99999**99999*************99999888888888889999999999999998 PP

       Arm_2 114 a.gLklltnlsvtneyqhllvsy...isellsLLskGnekikvqvLkvllnlseNpamtrell.sakvlssllsl 183
                 + +   l+nl+ tn  + +l+     i+ l++L+++G    k      l nl+  +a  r l+ +a + + l+ l
  KOO24460.1 590 EhAASALGNLAYTNAENEVLIAQagaIAPLVTLVQSGTDGQKEPAAGALANLAYTNAKNRVLIaQAGAIAPLVTL 664
                 625678999999999998887533338999999999999999999999999998777777776245556666665 PP

  == domain 3  score: 3.1 bits;  conditional E-value: 0.018
       Arm_2  49 iirdlggitiianllsksnaevkekalnalnnlsenvenqkkikvyvnqvckdivssplNsevQlagLklltnlsvtneyqhllvs..yisellsLLsk 145
                 +i + g i+ +  l+ +  a + e+a  a                                         l  l+v++e + l+++   is l++L+++
  KOO24460.1 651 LIAQAGAIAPLVTLVQSGTAGEMEQAADA-----------------------------------------LRTLAVNDENKVLIAQagAISPLVTLVQS 708
                 34444444333334433333334444444.........................................44555555555555542235666666666 PP

       Arm_2 146 GnekikvqvLkvllnlseNpam 167
                 G    k +    l nl+ N+a 
  KOO24460.1 709 GTAGQKEYAAAALRNLAINNAE 730
                 6666666666666666665555 PP

>> HEAT_EZ  HEAT-like repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.9   1.2   0.00035       1.1       6      55 .]     426     475 ..     425     475 .. 0.95
   2 !   15.5   1.5   6.2e-06     0.019       3      55 .]     464     516 ..     462     516 .. 0.96
   3 !    9.4   0.5   0.00052       1.6       3      55 .]     505     557 ..     503     557 .. 0.91
   4 !    9.7   0.3   0.00042       1.3       3      55 .]     546     599 ..     544     599 .. 0.88
   5 !    7.8   0.5    0.0016       4.9       3      55 .]     588     641 ..     586     641 .. 0.84
   6 !    5.6   1.1    0.0075        23       6      55 .]     675     724 ..     674     724 .. 0.94

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.00035
     HEAT_EZ   6 aAawaLGrlaggepellqplvpeilpaLlalLnddsdeVRaaAagaLgnl 55 
                  Aa+aL +la ++ + +  ++  ++++L+ l ++  d  +++AagaL+nl
  KOO24460.1 426 EAARALRSLAYNAENRVLIVQAGAIAPLVTLVQSGTDGQKEQAAGALANL 475
                 6999**779**************************************997 PP

  == domain 2  score: 15.5 bits;  conditional E-value: 6.2e-06
     HEAT_EZ   3 vRraAawaLGrlaggepellqplvpeilpaLlalLnddsdeVRaaAagaLgnl 55 
                 +++ Aa aL++la+++ + l  ++  ++++L+ l ++  d  ++ AagaL+nl
  KOO24460.1 464 QKEQAAGALANLAVNAENKLLIAQAGAIAPLVTLVQSGTDGQKERAAGALRNL 516
                 6799***********************************************97 PP

  == domain 3  score: 9.4 bits;  conditional E-value: 0.00052
     HEAT_EZ   3 vRraAawaLGrlaggepellqplvpeilpaLlalLnddsdeVRaaAagaLgnl 55 
                 +++ Aa aL +la ++ + +  ++  ++++L+ l ++  d  + +A+ aLgnl
  KOO24460.1 505 QKERAAGALRNLALNAENRVLIAQAGAIAPLVTLVQSGTDGQKVNAVAALGNL 557
                 57888999977889999999999****************************97 PP

  == domain 4  score: 9.7 bits;  conditional E-value: 0.00042
     HEAT_EZ   3 vRraAawaLGrlaggepellqp.lvpeilpaLlalLnddsdeVRaaAagaLgnl 55 
                 ++ +A++aLG+la  ++e   + ++  ++++L+ l ++  +  ++ Aa aLgnl
  KOO24460.1 546 QKVNAVAALGNLAYTNDENRVLiAQAGAIAPLVTLVQSGTAGQKEHAASALGNL 599
                 5689*******7777777755569****************************97 PP

  == domain 5  score: 7.8 bits;  conditional E-value: 0.0016
     HEAT_EZ   3 vRraAawaLGrlaggepellqp.lvpeilpaLlalLnddsdeVRaaAagaLgnl 55 
                 ++++Aa+aLG+la  ++e   + ++  ++++L+ l ++  d  ++ AagaL+nl
  KOO24460.1 588 QKEHAASALGNLAYTNAENEVLiAQAGAIAPLVTLVQSGTDGQKEPAAGALANL 641
                 5799*******66555555444499**************************997 PP

  == domain 6  score: 5.6 bits;  conditional E-value: 0.0075
     HEAT_EZ   6 aAawaLGrlaggepellqplvpeilpaLlalLnddsdeVRaaAagaLgnl 55 
                  Aa aL +la++  + +  ++  ++ +L+ l ++  +  +++Aa aL+nl
  KOO24460.1 675 QAADALRTLAVNDENKVLIAQAGAISPLVTLVQSGTAGQKEYAAAALRNL 724
                 7999**88**999999*******************************997 PP

>> DUF4726  Domain of unknown function (DUF4726)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.7     4e-06     0.012      11      40 ..     353     382 ..     344     426 .. 0.78

  Alignments for each domain:
  == domain 1  score: 15.8 bits;  conditional E-value: 4e-06
     DUF4726  11 gkaglglggrpppqpsrderaqqlldaveq 40 
                 g ag+g g   pp ps+der q+l++ v  
  KOO24460.1 353 GGAGVGTGADAPPAPSKDERLQRLVEQVRS 382
                 88*********************9876654 PP

>> SNAD2  Secreted Novel AID/APOBEC-like Deaminase 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.1   0.0     0.023        68      77     105 ..     433     459 ..     415     465 .. 0.79
   2 ?    3.2   0.0     0.021        62      78     105 ..     471     500 ..     460     507 .. 0.81
   3 ?    2.5   0.0     0.035     1e+02      78     106 ..     512     542 ..     501     552 .. 0.80
   4 ?   -1.1   0.0      0.42   1.3e+03      82     104 ..     602     624 ..     561     630 .. 0.62
   5 ?   -0.8   0.0      0.34     1e+03      79     104 ..     682     707 ..     645     712 .. 0.75

  Alignments for each domain:
  == domain 1  score: 3.1 bits;  conditional E-value: 0.023
       SNAD2  77 ssgradHaEyrlLeakklepkplnellnd 105
                 s   a+ aE r+L+++ ++  pl +l+++
  KOO24460.1 433 S--LAYNAENRVLIVQAGAIAPLVTLVQS 459
                 3..499********************986 PP

  == domain 2  score: 3.2 bits;  conditional E-value: 0.021
       SNAD2  78 s..gradHaEyrlLeakklepkplnellnd 105
                 +  + a+ aE +lL+a+ ++  pl +l+++
  KOO24460.1 471 AlaNLAVNAENKLLIAQAGAIAPLVTLVQS 500
                 344889*********************986 PP

  == domain 3  score: 2.5 bits;  conditional E-value: 0.035
       SNAD2  78 s..gradHaEyrlLeakklepkplnellndk 106
                 +  + a  aE r+L+a+ ++  pl +l+++ 
  KOO24460.1 512 AlrNLALNAENRVLIAQAGAIAPLVTLVQSG 542
                 33477899*******************9864 PP

  == domain 4  score: -1.1 bits;  conditional E-value: 0.42
       SNAD2  82 dHaEyrlLeakklepkplnelln 104
                   aE  +L+a+ ++  pl +l++
  KOO24460.1 602 TNAENEVLIAQAGAIAPLVTLVQ 624
                 35777777777777777777776 PP

  == domain 5  score: -0.8 bits;  conditional E-value: 0.34
       SNAD2  79 gradHaEyrlLeakklepkplnelln 104
                   a+  E ++L+a+ ++ +pl +l++
  KOO24460.1 682 TLAVNDENKVLIAQAGAISPLVTLVQ 707
                 45677788889998999999998886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (740 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       414  (0.0230911); expected 358.6 (0.02)
Passed bias filter:                      282  (0.0157287); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.63u 0.29s 00:00:00.92 Elapsed: 00:00:00.44
# Mc/sec: 5016.70
//
Query:       KOO24461.1  [L=297]
Description: ubiquinone/menaquinone biosynthesis methyltransferase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      2e-83  279.3   0.0    2.3e-83  279.1   0.0    1.0  1  Ubie_methyltran  ubiE/COQ5 methyltransferase family
      2e-18   66.9   0.0    1.9e-17   63.7   0.0    2.6  2  Methyltransf_25  Methyltransferase domain
    2.8e-17   63.2   0.0    1.6e-16   60.7   0.0    2.3  2  Methyltransf_11  Methyltransferase domain
    2.7e-11   43.5   0.0    4.5e-11   42.8   0.0    1.4  1  Methyltransf_31  Methyltransferase domain
    1.6e-10   41.6   0.0    4.1e-10   40.3   0.0    1.7  2  Methyltransf_12  Methyltransferase domain
    2.3e-08   34.0   0.0    3.4e-08   33.5   0.0    1.2  1  Methyltransf_23  Methyltransferase domain
      1e-06   28.8   0.0    1.6e-05   24.9   0.0    2.1  2  Methyltransf_8   Hypothetical methyltransferase
  ------ inclusion threshold ------
      0.016   13.7   0.1      0.024   13.2   0.1    1.2  1  Methyltransf_29  Putative S-adenosyl-L-methionine-dependent m
      0.081   12.5   0.0        3.6    7.1   0.0    2.3  2  MTS              Methyltransferase small domain
       0.13   11.8   0.0       0.42   10.2   0.0    1.8  2  NodS             Nodulation protein S (NodS)
       0.14   11.3   0.0       0.19   10.9   0.0    1.2  1  NNMT_PNMT_TEMT   NNMT/PNMT/TEMT family
       0.14   11.4   0.0        8.1    5.7   0.0    2.4  2  Methyltransf_2   O-methyltransferase domain


Domain annotation for each model (and alignments):
>> Ubie_methyltran  ubiE/COQ5 methyltransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  279.1   0.0   1.5e-86   2.3e-83       5     232 ..      41     293 ..      34     294 .. 0.93

  Alignments for each domain:
  == domain 1  score: 279.1 bits;  conditional E-value: 1.5e-86
                      XXXXXXXXXX-HHHHHHHHHHHHHTTTHHHHHHHHHHH--S--..TT...EEEEES-TT-HHHHHHHHHHHHHH..............EEEEEE CS
  Ubie_methyltran   5 keekvkevfesvaskyDlmndvlslgihrlWkkfveklvavkr..ga...kvlDvagGtgDlafklsdsvgekg..............kvvvlD 79 
                      ke+ v +vf++vaskyDlmndv+s g+hr+Wk+ + ++ + ++  ga   +vlDv gGtgD+af++++++ +                ++vv D
       KOO24461.1  41 KERLVGHVFQNVASKYDLMNDVMSAGVHRVWKDTMVEMLGIRSipGAanlQVLDVGGGTGDIAFRIAHEMARARpapggtspnereapRIVVSD 134
                      5555*****************************888887766422436779***************988776666999**************** PP

                      S-HHHHHHHHHHHHHHTSS......TEEEEE--TTT-TTS-T-EEEEEEES-GGG-S-HHHHHHHHHHHEEEEEEEEEEEE----SHHHHHHHH CS
  Ubie_methyltran  80 inenmLkvgekklkeegki......nieflqanaeeLpfeddsfDvvtvsfGlrnvtDklkaLkeayrvlkpGGrlvvlefskvelpllsqaye 167
                      in+ mL +g++++++          ++e+l+a+a +Lpf+d sfDv+t++f +rnvt  ++aL+eayrvl+pGGr+v+lefs+v++p+l +aye
       KOO24461.1 135 INPAMLAEGRRRAEQMPSLasppapRLEWLTADARRLPFDDCSFDVYTIAFCIRNVTRVDEALREAYRVLRPGGRFVCLEFSHVTNPMLAKAYE 228
                      **************99877789999********************************************************************* PP

                      HHHH.HHHHHHHHHHS-HHHHHHHHHHHHHS--HHHHHHHHHHTTEEEEEEEEEGGGTEEEEEEE CS
  Ubie_methyltran 168 lyskevlPvlGkllakdldsyryLvesirafPdqetlkeliedaGfksveyesltgGvvaihigv 232
                       ys++v+P++G+l+a d  sy+yLvesir+fP qe++++++++aG++sv+y++lt+G va+h g+
       KOO24461.1 229 HYSFNVIPRMGELVASDRASYQYLVESIRQFPKQEQFATMMREAGMRSVTYTNLTFGTVAVHSGF 293
                      **************************************************************996 PP

>> Methyltransf_25  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.7   0.0   1.3e-20   1.9e-17       1      97 []      92     208 ..      92     208 .. 0.87
   2 ?   -1.1   0.0       2.1   3.1e+03      40      62 ..     241     263 ..     211     281 .. 0.63

  Alignments for each domain:
  == domain 1  score: 63.7 bits;  conditional E-value: 1.3e-20
                      EEEET-TTSHHHHHHHCT.............ST..SSEEEEEESSHHHHHHHHHHHHH.....TTT...TEEEEESBCCGBSSSTTTEEEEEEE CS
  Methyltransf_25   1 vLdlGcGtGrltlalakr.............lg..kakvtgvDiseemleaareraee.....egl...nvefvqgdaedlpfedgsfDlvvss 71 
                      vLd+G GtG++++++a++              +  + +++  Di+++ml++ r+rae+     + +   ++e++++da++lpf+d sfD+ +++
       KOO24461.1  92 VLDVGGGTGDIAFRIAHEmararpapggtspNEreAPRIVVSDINPAMLAEGRRRAEQmpslaS-PpapRLEWLTADARRLPFDDCSFDVYTIA 184
                      9**************9998888888876554114589*******************98776642.2678************************9 PP

                      STGGGSSHHHHHHHHHHHHHHEEEEE CS
  Methyltransf_25  72 galhhlsdedlekalkeiarvLkpgG 97 
                      +++  ++  ++++al+e++rvL+pgG
       KOO24461.1 185 FCIRNVT--RVDEALREAYRVLRPGG 208
                      9988877..6779************9 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 2.1
                      HHHHTTTTEEEEESBCCGBSSST CS
  Methyltransf_25  40 raeeeglnvefvqgdaedlpfed 62 
                       +++++++ ++++ +++++p ++
       KOO24461.1 241 LVASDRASYQYLVESIRQFPKQE 263
                      33334445666666666666544 PP

>> Methyltransf_11  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.7   0.0   1.1e-19   1.6e-16       1      96 []      93     212 ..      93     212 .. 0.85
   2 ?   -1.6   0.0       2.9   4.3e+03      20      57 ..     228     261 ..     217     287 .. 0.61

  Alignments for each domain:
  == domain 1  score: 60.7 bits;  conditional E-value: 1.1e-19
                      EEET-TTSHHHHHHH.................HTTSEEEEEES-HHHHHHHHHHCCHHT-.......EEEETTEECCCTSS-TT-EEEEEEES- CS
  Methyltransf_11   1 LdvGcGtGrlaeala.................krgarvvgvDlskemlklakekaseegl.......kvefvvadaeklpfednsfDlvvssev 70 
                      LdvG GtG +a  +a                 + + r+v  D++++ml+  +++a++ +        ++e++ ada++lpf d sfD+ ++ ++
       KOO24461.1  93 LDVGGGTGDIAFRIAhemararpapggtspneREAPRIVVSDINPAMLAEGRRRAEQMPSlasppapRLEWLTADARRLPFDDCSFDVYTIAFC 186
                      6777777777777776666666655555544344489***********999999999888999******************************* PP

                      CCC-CCHHHHHHHHHHHEEEEEEEEE CS
  Methyltransf_11  71 lhhvedpekalkeiaRvLkpgGllvi 96 
                      + +v ++++al+e++RvL+pgG++v+
       KOO24461.1 187 IRNVTRVDEALREAYRVLRPGGRFVC 212
                      ***********************996 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 2.9
                      EEEEEES-HHHHHHHHHHCCHHT-EEEETTEECCCTSS CS
  Methyltransf_11  20 rvvgvDlskemlklakekaseeglkvefvvadaeklpf 57 
                      + + +++ ++m +l+ +       + +++v++++++p 
       KOO24461.1 228 EHYSFNVIPRMGELVASDRA----SYQYLVESIRQFPK 261
                      55555555555544422222....23457777776553 PP

>> Methyltransf_31  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.8   0.0     3e-14   4.5e-11       4     151 ..      89     272 ..      87     273 .. 0.73

  Alignments for each domain:
  == domain 1  score: 42.8 bits;  conditional E-value: 3e-14
  Methyltransf_31   4 glrvlDlGCGtGeltfelae..........elgpkae.........vvGiDiseeaielArenaqklgld......nveFeqgdieeleklled 72 
                      +l+vlD+G GtG+++f++a+                +         +v  Di++ ++   r +a++  +       ++e   +d+  l+  + d
       KOO24461.1  89 NLQVLDVGGGTGDIAFRIAHemararpapgG-----TspnereaprIVVSDINPAMLAEGRRRAEQMPSLasppapRLEWLTADARRLP--FDD 175
                      89******************77756555440.....2445555666*******************988766778889************..9** PP

  Methyltransf_31  73 ekfDlilsnevlnaladpdkileeiervlkpggilliedprllaelp..akveeeskay......evvegak...........igtqkdelyel 147
                       +fD+ +    +  ++  d++l+e+ rvl+pgg++++ ++++ ++ p  ak++e+  ++      e+v  +            ++  ++++ ++
       KOO24461.1 176 CSFDVYTIAFCIRNVTRVDEALREAYRVLRPGGRFVCLEFSHVTN-PmlAKAYEHYSFNviprmgELVASDRasyqylvesirQFPKQEQFATM 268
                      *****99888889****************************3322.223555555544444444422222223344444443344466666666 PP

  Methyltransf_31 148 leea 151
                      ++ea
       KOO24461.1 269 MREA 272
                      6655 PP

>> Methyltransf_12  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.0       6.7     1e+04      64      75 ..      46      67 ..      27      79 .. 0.55
   2 !   40.3   0.0   2.7e-13   4.1e-10       1      99 []      93     210 ..      93     210 .. 0.93

  Alignments for each domain:
  == domain 1  score: -2.7 bits;  conditional E-value: 6.7
  Methyltransf_12 64 g.......ssfDl...vvasnv 75
                     g       s++Dl   v +++v
       KOO24461.1 46 GhvfqnvaSKYDLmndVMSAGV 67
                     1455555567776443334444 PP

  == domain 2  score: 40.3 bits;  conditional E-value: 2.7e-13
  Methyltransf_12   1 LeiGcGtGsllrallekl...............pdieytgvDispsai...edakeklakrennnnnnvelealdlldldgg.ssfDlvvasnv 75 
                      L++G+GtG+++++++ +                +  +++++Di+p+++    +++e++ +     + ++e+ + d+  l+    sfD+ +++++
       KOO24461.1  93 LDVGGGTGDIAFRIAHEMararpapggtspnerEAPRIVVSDINPAMLaegRRRAEQMPSLASPPAPRLEWLTADARRLPFDdCSFDVYTIAFC 186
                      8********************************99*************888888888888888889999999999877766689********** PP

  Methyltransf_12  76 lhhlkdirevldnirklLkpgGrl 99 
                      + ++  ++e+l++++++L+pgGr+
       KOO24461.1 187 IRNVTRVDEALREAYRVLRPGGRF 210
                      **********************96 PP

>> Methyltransf_23  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.5   0.0   2.3e-11   3.4e-08       8     163 ..      70     277 ..      63     279 .. 0.70

  Alignments for each domain:
  == domain 1  score: 33.5 bits;  conditional E-value: 2.3e-11
  Methyltransf_23   8 elsdklerllpk....lraggrvLdiGcGtG.illevlre................ngfsvtgvDlspeaveiae.kakkaqkdqfdeqeaaep 79 
                       ++d   ++l+       a+  vLd+G GtG i  +++ e                +   +++ D++p++ ++ +        +q+  + a++p
       KOO24461.1  70 VWKDTMVEMLGIrsipGAANLQVLDVGGGTGdIAFRIAHEmararpapggtspnerEAPRIVVSDINPAMLAEGRrR-----AEQM-PSLASPP 157
                      5555555555442222345559*********7776666555556777777777654557*********999875432.....2222.2233343 PP

  Methyltransf_23  80 qg.................kfdlIvlrevlehvpdppellrqiatllkpgGylllseplasl.......................kedrllldw 133
                      +                  +fd+ +  +++ +v  + e+lr +++ l+pgG+++++e+  s+                         +++  ++
       KOO24461.1 158 APrlewltadarrlpfddcSFDVYTIAFCIRNVTRVDEALREAYRVLRPGGRFVCLEF--SHvtnpmlakayehysfnviprmgeLVASDRASY 249
                      3355666666667777777**************************************9..5545666666666666665555543233333347 PP

  Methyltransf_23 134 lylvpagrhisffsarslkelleeaGlevv 163
                      +ylv+    ++f   ++++++++eaG + v
       KOO24461.1 250 QYLVES--IRQFPKQEQFATMMREAGMRSV 277
                      888866..99****************9876 PP

>> Methyltransf_8  Hypothetical methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.9   0.0      0.11   1.7e+02      34      92 ..      49     108 ..      36     113 .. 0.68
   2 !   24.9   0.0   1.1e-08   1.6e-05      75     160 ..     131     216 ..     123     268 .. 0.77

  Alignments for each domain:
  == domain 1  score: 1.9 bits;  conditional E-value: 0.11
                     HHH-HHHHHHHHHHHHHHHCT.SSS-HHHHH.HHHHCTS-TTS-EEEES-TT-HHHHH--S CS
  Methyltransf_8  34 fkedpeafdlyhkgfrsqvkk.WPenPldvi.irklkkkkdnlvvadlGcGeakiaeavre 92 
                     f++  + +dl  +     v++ W    ++++ ir++    +nl v d+G G   ia+++ +
      KOO24461.1  49 FQNVASKYDLMNDVMSAGVHRvWKDTMVEMLgIRSI-PGAANLQVLDVGGGTGDIAFRIAH 108
                     555556666666666666654355555555534444.34578999***********99875 PP

  == domain 2  score: 24.9 bits;  conditional E-value: 1.1e-08
                     -EEEES-TT-HHHHH--S-..EEEEESS.-SSTTEEES-TTS-S--TT-EEEEEEES--.-SS-HHHHHHHHHHHEEEEEEEEEEEEG CS
  Methyltransf_8  75 vvadlGcGeakiaeavrekekvrsfdlv.avnervvacdlakvPledesvdvavfclsl.mgtnladflkeanrvlkvGGllkvaevk 160
                     vv d+    a +ae  r+ e++ s+    a+  +  + d +++P +d s dv  + + +  +t + + l+ea+rvl++GG +   e +
      KOO24461.1 131 VVSDIN--PAMLAEGRRRAEQMPSLASPpAPRLEWLTADARRLPFDDCSFDVYTIAFCIrNVTRVDEALREAYRVLRPGGRFVCLEFS 216
                     556653..577888888999999887541345566799*************97554444157999***************99887764 PP

>> Methyltransf_29  Putative S-adenosyl-L-methionine-dependent methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.1   1.6e-05     0.024     172     217 ..     168     212 ..     163     234 .. 0.89

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 1.6e-05
  Methyltransf_29 172 tkrlpyPsrsfdlihCsrCridwteedgilllevdRvlRpgGyfvl 217
                      ++rlp+   sfd+   + C  + t+ d   l e  RvlRpgG fv 
       KOO24461.1 168 ARRLPFDDCSFDVYTIAFCIRNVTRVDE-ALREAYRVLRPGGRFVC 212
                      689****************999999886.689**********9995 PP

>> MTS  Methyltransferase small domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.1   0.0    0.0024       3.6      27      55 ..      84     112 ..      73     116 .. 0.82
   2 ?    3.0   0.0     0.045        67     118     145 ..     193     220 ..     188     235 .. 0.76

  Alignments for each domain:
  == domain 1  score: 7.1 bits;  conditional E-value: 0.0024
                 CHCCTCSEEEEET-TTSHHHHHHHHHTTC CS
         MTS  27 lpkelsgkvlDlGcGaGvlgaalakespe 55 
                 +p +++ +vlD+G G+G ++  +a+e  +
  KOO24461.1  84 IPGAANLQVLDVGGGTGDIAFRIAHEMAR 112
                 55557779*************99998765 PP

  == domain 2  score: 3.0 bits;  conditional E-value: 0.045
                 HHHHHHHHHHHEEEEEEEEEEEETTSCH CS
         MTS 118 aeeliaeAkeaLkegGeLliVanrklgy 145
                 ++e ++eA ++L++gG++++   +++  
  KOO24461.1 193 VDEALREAYRVLRPGGRFVCLEFSHVTN 220
                 567789************9988777654 PP

>> NodS  Nodulation protein S (NodS)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.0   0.00028      0.42      67     143 ..     129     211 ..     121     219 .. 0.76
   2 ?   -2.6   0.0       2.3   3.5e+03      91     110 ..     249     268 ..     241     271 .. 0.80

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.00028
        NodS  67 rltvvdvveeaiararervkes........shiswivsdvqqfstde.kfdlivvaevlyyiedvaelraavrnlvsllapdgqlv 143
                 r+ v d+ +  +a  r+r +++        + + w+++d +++  d+  fd+  +a   + i++v+++  a+r+  ++l+p+g++v
  KOO24461.1 129 RIVVSDINPAMLAEGRRRAEQMpslasppaPRLEWLTADARRLPFDDcSFDVYTIA---FCIRNVTRVDEALREAYRVLRPGGRFV 211
                 5566677777777777777665111111114679*********9876379987766...899*********************998 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 2.3
        NodS  91 iswivsdvqqfstdekfdli 110
                  +++v  ++qf ++e+f ++
  KOO24461.1 249 YQYLVESIRQFPKQEQFATM 268
                 56788999999999999876 PP

>> NNMT_PNMT_TEMT  NNMT/PNMT/TEMT family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   0.00013      0.19     155     199 ..     171     214 ..     147     254 .. 0.87

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00013
                     SS..EEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEEEEEEEEE CS
  NNMT_PNMT_TEMT 155 lpkkadvvvtifcleaacedleeylralrnlasllkpGGhlvlgg 199
                     lp   d+   ++++  + +++    +alr++ ++l+pGG++v ++
      KOO24461.1 171 LPF-DDCSFDVYTIAFCIRNVTRVDEALREAYRVLRPGGRFVCLE 214
                     554.68999999******************************875 PP

>> Methyltransf_2  O-methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.7   0.0    0.0054       8.1      36      81 ..      60     107 ..      35     114 .. 0.67
   2 ?    3.2   0.0     0.031        46     145     187 ..     193     235 ..     171     255 .. 0.86

  Alignments for each domain:
  == domain 1  score: 5.7 bits;  conditional E-value: 0.0054
                     HHHHHHHHHTTHHHHHHHHHHSS-GGG-S..EEEEET-TTSHHHHHHH CS
  Methyltransf_2  36 rakfnkglqessslvakkvleafdleglk..slvDvGGGtGalakaiv 81 
                     ++++++g++ +++ ++ ++l    + g    +++DvGGGtG +a  i+
      KOO24461.1  60 NDVMSAGVHRVWKDTMVEMLGIRSIPGAAnlQVLDVGGGTGDIAFRIA 107
                     5555566666666666666655554444311568*******9987776 PP

  == domain 2  score: 3.2 bits;  conditional E-value: 0.031
                     HHHHHHHHHHH--TT-EEEEEE----TTS---HHHHHHHHHHH CS
  Methyltransf_2 145 cvklLkrvkkalpagGkvivveavlgadpsgeletelvdliml 187
                     + + L++ ++ l++gG+ +  e    ++p   ++ e ++++++
      KOO24461.1 193 VDEALREAYRVLRPGGRFVCLEFSHVTNPMLAKAYEHYSFNVI 235
                     56779999***************99999999999999999886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (297 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       442  (0.0246528); expected 358.6 (0.02)
Passed bias filter:                      407  (0.0227007); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.49u 0.24s 00:00:00.73 Elapsed: 00:00:00.41
# Mc/sec: 2163.96
//
Query:       KOO24462.1  [L=1000]
Description: carbohydrate-binding module family 48 protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    9.2e-32  109.1   0.0    1.8e-31  108.2   0.0    1.5  1  AMPK1_CBM     Glycogen recognition site of AMP-activated prot
    2.5e-08   34.1   0.3    5.3e-08   33.0   0.3    1.6  1  AMPKBI        5'-AMP-activated protein kinase beta subunit, i


Domain annotation for each model (and alignments):
>> AMPK1_CBM  Glycogen recognition site of AMP-activated protein kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  108.2   0.0     2e-35   1.8e-31       1      82 [.      48     129 ..      48     132 .. 0.97

  Alignments for each domain:
  == domain 1  score: 108.2 bits;  conditional E-value: 2e-35
   AMPK1_CBM   1 vptvikWkggGkkVyvtGsfnnWkkkipLkksekdfsvilkLpeGthqykFiVDgewrvdpdlptatdeeGnlnNvievkes 82 
                 vptv++W+ gG +VyvtGsfn+W ++ip+++s+ d++v+l+L  Gt+qykFiVD+ewr++ d+pt++de+Gn+nN+++v+++
  KOO24462.1  48 VPTVLQWSLGGASVYVTGSFNQWGERIPMRRSGADHVVCLNLLAGTYQYKFIVDNEWRYAADQPTVRDEMGNINNCLTVEDQ 129
                 79*****************************************************************************975 PP

>> AMPKBI  5'-AMP-activated protein kinase beta subunit, interaction domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.0   0.3   5.9e-12   5.3e-08       3      66 ..     162     222 ..     160     223 .. 0.90

  Alignments for each domain:
  == domain 1  score: 33.0 bits;  conditional E-value: 5.9e-12
      AMPKBI   3 keppklPphLekvllnkssdsaassaddssvlpiPnhvvLnHLltssikngvlavgcttRYrkK 66 
                 kepp++P+hL  + ln+  ++  +++  s +l +P  v+L H++  +  n + +++ct+R+r+K
  KOO24462.1 162 KEPPSVPAHLGVLSLNQ--TTVREARTASWTLREPLPVTLTHICSLRQAN-TTTLSCTHRFRNK 222
                 89***************..777889999999***********99777655.99*********99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1000 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2427  (0.135367); expected 358.6 (0.02)
Passed bias filter:                      548  (0.030565); expected 358.6 (0.02)
Passed Vit filter:                       142  (0.00792013); expected 17.9 (0.001)
Passed Fwd filter:                        54  (0.00301188); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 1.80u 0.36s 00:00:02.16 Elapsed: 00:00:00.60
# Mc/sec: 5028.09
//
Query:       KOO24463.1  [L=523]
Description: hypothetical protein Ctob_000424, partial [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    8.1e-08   31.8   0.0      5e-07   29.3   0.0    2.1  1  ADPrib_exo_Tox  ADP-ribosyltransferase exoenzyme
    1.7e-05   24.2   0.0    2.8e-05   23.5   0.0    1.3  1  ART             NAD:arginine ADP-ribosyltransferase


Domain annotation for each model (and alignments):
>> ADPrib_exo_Tox  ADP-ribosyltransferase exoenzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.3   0.0   5.6e-11     5e-07      13     169 ..     316     456 ..     298     481 .. 0.75

  Alignments for each domain:
  == domain 1  score: 29.3 bits;  conditional E-value: 5.6e-11
                     HHTS-HHHHHHHHHHCCTTHHHHHHHHHCTTTSGGGS-SCHHHHHHHHHHHHCCT-B-SS-EEEEEEE-GGGG-HHHHTT-HHHHHHHHHHHTT- CS
  ADPrib_exo_Tox  13 kekltssekeaireYtgsgysdINnyLrqnkgerndldkselekkiknldsaleksripeniivYRrvdeaelgleldskneekvsefeakvkgk 107
                     ++k+t+++  a+reYt+  y+++ +   ++    + l  + +++ + +l+      ++++  +vYR+v+   l  ++ ++n         k   +
      KOO24463.1 316 ARKPTAADEVALREYTRAAYEEVVKRINKYT---TTL--HAINSVVVKLS------KLTKASTVYRGVHDFVLPDQFWTPN---------KHGVR 390
                     455699**************99988776555...222..56666655554......6677779****95555533333323.........33345 PP

                     EEEESS-EEEESSSS.SCCCTTT....SEEEEEEE-TTSBEEE-CCCSSSGCG-EEEE-TTEEEEE CS
  ADPrib_exo_Tox 108 vfkergyvSTslvkdtaasfggr....eilleltvpkgsegayisplslypgeaEvLlprgltyki 169
                        + +++ST+l++++a++++ +    + ++e++    + ga+is ls+yp e+E+L++  + +++
      KOO24463.1 391 GGIDGAFLSTTLKREEASKIATSgkaaPLIFEIQQGMIDRGADISFLSQYPFEKEILFNPLTGLEV 456
                     67899**********999998888766777777777779*******************96665555 PP

>> ART  NAD:arginine ADP-ribosyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.5   0.0   3.2e-09   2.8e-05     100     207 ..     343     463 ..     324     478 .. 0.77

  Alignments for each domain:
  == domain 1  score: 23.5 bits;  conditional E-value: 3.2e-09
         ART 100 fdfkalhfyLtraLqlLrkdsqrcsqvyRgvk.....glrfsrakkgksvR...fgqFtssslkkkvae...efgqd..tllsiktcl...gvpIkefs 182
                 +++ +   ++ +   +L+k   ++s vyRgv+         ++ k+g  vR   +g+F s+ lk++ a+    +g++   +++i+  +   g++I  +s
  KOO24463.1 343 NKYTTTLHAINSVVVKLSK-LTKASTVYRGVHdfvlpDQFWTPNKHG--VRggiDGAFLSTTLKREEASkiaTSGKAapLIFEIQQGMidrGADISFLS 438
                 6777778888999999999.9999********777744444566666..8866679********9999866644544226899998766669******* PP

         ART 183 kfpsedevLIppfevFkvtnlskee 207
                 ++p e+e+L  p++  +v++++ e+
  KOO24463.1 439 QYPFEKEILFNPLTGLEVSGSRVEG 463
                 ******************9966554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (523 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       565  (0.0315132); expected 358.6 (0.02)
Passed bias filter:                      500  (0.0278878); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.53u 0.29s 00:00:00.82 Elapsed: 00:00:00.43
# Mc/sec: 3678.39
//
Query:       KOO24464.1  [L=113]
Description: hypothetical protein Ctob_000406 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.3e-06   27.2   0.0    4.8e-06   26.7   0.0    1.4  1  UBX       UBX domain


Domain annotation for each model (and alignments):
>> UBX  UBX domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.7   0.0   2.7e-10   4.8e-06       7      40 ..      32      65 ..      27     109 .. 0.77

  Alignments for each domain:
  == domain 1  score: 26.7 bits;  conditional E-value: 2.7e-10
                EEEEEEETTSTEEEEEEESSSBHHHHHHHHHHHC CS
         UBX  7 trlqiRlpdGsrlvrrFkksdtlesvyeyVdskl 40
                t+l++Rlp+G+  vrrF+ +dt ++++++ +   
  KOO24464.1 32 TTLKVRLPNGQAVVRRFRRTDTAAALFAWLAALE 65
                79***************************87655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (113 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       311  (0.0173462); expected 358.6 (0.02)
Passed bias filter:                      212  (0.0118244); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.24s 00:00:00.60 Elapsed: 00:00:00.39
# Mc/sec: 869.22
//
Query:       KOO24465.1  [L=497]
Description: hypothetical protein Ctob_000407 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.3e-86  291.1   0.0    1.6e-86  290.8   0.0    1.0  1  Peptidase_S28  Serine carboxypeptidase S28
  ------ inclusion threshold ------
      0.038   12.7   0.0       0.23   10.1   0.0    1.9  2  Peptidase_S37  PS-10 peptidase S37
       0.12   11.9   0.0        0.2   11.1   0.0    1.3  1  Peptidase_S9   Prolyl oligopeptidase family


Domain annotation for each model (and alignments):
>> Peptidase_S28  Serine carboxypeptidase S28
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  290.8   0.0   2.6e-90   1.6e-86       3     434 .]      46     486 ..      44     486 .. 0.80

  Alignments for each domain:
  == domain 1  score: 290.8 bits;  conditional E-value: 2.6e-90
  Peptidase_S28   3 lDhFdasnkrtfqqryfvndqfyknggpiflyiGgegslsaswvsng.....eilklAkefgAlvlslEHRfYG....qSiPvkdlstenlrylss 89 
                    +Dh d+ n++t+qq yfvnd+f+   gp+f+ +Ggeg++ ++++          ++l ++ +Al+l +EHR+YG     + P++  + e lr+lss
     KOO24465.1  46 QDHLDPGNTKTWQQAYFVNDTFFDGSGPVFVCVGGEGPALDGSAVVSsvhcnDAVELMPRVNALMLAVEHRYYGchntSACPYSSHDSEPLRFLSS 141
                    7***********************************9976554333225555889999****************6654468*************** PP

  Peptidase_S28  90 eqaLaDlasfikalkqkfklsssskwitfGgSYsgsLaawarkkyPelvvgavaSSaPllakvdfkeylevvetslakvag....ecakaveqgfa 181
                    +qaLaDla f  + +++f l s +kw+ fGgSY+g+La w+r +yPelv ++v+SSaP+ ak+d +ey +v ++ ++  ++    ec+  +++g a
     KOO24465.1 142 RQALADLATFHSFATREFSLTSANKWVSFGGSYPGMLAGWFRVLYPELVHASVSSSAPVVAKLDMNEYWDVGSKAYSLPSVggsdECYTDIKTGHA 237
                    ***********************************************************************998777665555767********** PP

  Peptidase_S28 182 eveellktkegrqalkeel..qlcskldektdkdvakffsniasefqgvvqysydgkan.aalsaisikelCklllna..sktdlilrvevliqlf 272
                     + el+ t+ g+ +l + +  q  s+++ +t  ++  f      + +g+++++  g+++  + s+++i+++C ++++   skt+     e+l +l 
     KOO24465.1 238 MIGELMGTATGNAQLAHLFprQVSSPASLNTTSGQRAF------AGNGIIDFPAQGNDPtCTSSNCNIDKICATVRDGpsSKTP----LERLSTLA 323
                    ***************77772234444555455555554......44566666655544314667899********965224444....47777774 PP

  Peptidase_S28 273 kslnqkslnlstadis..yqlanaekkdsslesladdrqWlyqtCtEfgfyqttds.eaqlfgsk.vpvelyidlCedvFgasynskkvsqavkat 364
                       + +   ++t + s   ql++ +   s+     +   W yqtCtEfgfyqt++   a++f +  v +  ++ +C+  +  ++  + ++++++at
     KOO24465.1 324 GGPG-APVPVQTRALSmvEQLSSDAATVSK--LHRELDYWGYQTCTEFGFYQTCEVgTACMFTQGlVLLPEFTATCQA-W--QITPAMIKKSIDAT 413
                    4333.4444444444400333333333333..2555668****************95667777762456789999975.5..355556******** PP

  Peptidase_S28 365 nskYGgadnp....katnvvfvnGalDPWhalglkkstdssvvpllikgaahcaDmypasssdsaelkaarali 434
                    n  YG+ d p    +at++++vnG++DPW+ l++ ks +  +++l+++ga+h+a + pa++sd ++++aa++ i
     KOO24465.1 414 NAFYGA-DRPdlarNATRILYVNGNVDPWSGLSILKSPSPLLPTLMVEGASHHAWTHPAQPSDQPSVVAAKQAI 486
                    *****9.44433339*******************************************************9976 PP

>> Peptidase_S37  PS-10 peptidase S37
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.0   3.8e-05      0.23     133     175 ..     164     204 ..     105     235 .. 0.76
   2 ?   -0.1   0.0     0.047   2.8e+02     348     365 ..     425     442 ..     405     448 .. 0.87

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 3.8e-05
  Peptidase_S37 133 sknwistggskggmtatyyerfyprdmdgvvayvapndvvnke 175
                    +++w+s ggs  gm a ++  +yp  +   v+  ap  vv k 
     KOO24465.1 164 ANKWVSFGGSYPGMLAGWFRVLYPELVHASVSSSAP--VVAKL 204
                    457**********************99999988887..44443 PP

  == domain 2  score: -0.1 bits;  conditional E-value: 0.047
  Peptidase_S37 348 rhnarhmlfvygendpwg 365
                     +na ++l+v g+ dpw 
     KOO24465.1 425 ARNATRILYVNGNVDPWS 442
                    46899999********96 PP

>> Peptidase_S9  Prolyl oligopeptidase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   3.4e-05       0.2      43      97 ..     143     198 ..     133     218 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 3.4e-05
                   HHHHHHHHHHHHHHHTT.S--GGGEEEEEETHHHHHHHHHHHH-GGG-SEEEEESE CS
  Peptidase_S9  43 nefdDfiaaaealakeg.yvdserlaitGgSyGGyltgaalnqrpdlFkaavaevp 97 
                   + ++D+ +   +++ e+ ++++++ + +GgSy G+l+g+     p+l +a v++ +
    KOO24465.1 143 QALADLATFHSFATREFsLTSANKWVSFGGSYPGMLAGWFRVLYPELVHASVSSSA 198
                   56789999999999999**********************99989998888776543 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (497 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       370  (0.020637); expected 358.6 (0.02)
Passed bias filter:                      308  (0.0171789); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.53u 0.22s 00:00:00.75 Elapsed: 00:00:00.40
# Mc/sec: 3750.83
//
Query:       KOO24466.1  [L=168]
Description: receptor protein kinase-like protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.7e-12   45.5   7.8    7.5e-07   28.8   2.0    2.3  2  LRR_8     Leucine rich repeat
    2.3e-07   31.0  10.0     0.0017   18.7   1.4    3.9  4  LRR_4     Leucine Rich repeats (2 copies)
  ------ inclusion threshold ------
      0.017   15.6   6.1        6.4    7.7   0.0    4.6  4  LRR_1     Leucine Rich Repeat


Domain annotation for each model (and alignments):
>> LRR_8  Leucine rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.8   2.0   1.3e-10   7.5e-07       3      61 .]       4      62 ..       2      62 .. 0.96
   2 !   20.1   0.4   6.8e-08   0.00041      19      58 ..      70     109 ..      64     111 .. 0.93

  Alignments for each domain:
  == domain 1  score: 28.8 bits;  conditional E-value: 1.3e-10
                -SEEE-TTS--SEE-TTSSTT-TT--EEE--SS---GGGGGGGTT--S-.EEE--SS-- CS
       LRR_8  3 LtsLdLsnNrltslddeaFkglsnLkvLdLsnNllttlspgafsgLpsLrsLdLsgNrL 61
                 ++L+L+ N++++  + +  +++ L  L+Ls+N+lt   p  + +L+ Lr+L + +N L
  KOO24466.1  4 MRYLNLTTNNISGTLPPSIGNMQDLADLSLSENRLTGSVPLEIGSLSTLRHLRMHNNAL 62
                589******************************************************87 PP

  == domain 2  score: 20.1 bits;  conditional E-value: 6.8e-08
                 TSSTT-TT--EEE--SS---GGGGGGGTT--S-.EEE--S CS
       LRR_8  19 eaFkglsnLkvLdLsnNllttlspgafsgLpsLrsLdLsg 58 
                 ++  gl++L ++dL  N ++   p ++++L sL++L+L++
  KOO24466.1  70 STLGGLRSLLTFDLYANHMHGDVPPSIQDLVSLQYLYLDN 109
                 57789****************99***************97 PP

>> LRR_4  Leucine Rich repeats (2 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.6   0.2     0.016        94      24      39 ..       3      18 ..       1      24 [. 0.71
   2 !   18.7   1.4   2.8e-07    0.0017       6      42 ..      31      69 ..      26      71 .. 0.78
   3 !   12.3   0.4   2.9e-05      0.17       3      33 ..      52      86 ..      51      94 .. 0.84
   4 !   10.8   0.1   8.6e-05      0.51       3      33 ..      78     109 ..      76     117 .. 0.80

  Alignments for each domain:
  == domain 1  score: 3.6 bits;  conditional E-value: 0.016
                T--EEE-.-S-----G CS
       LRR_4 24 nLkeLdLsgNnlitdl 39
                 +++L+L+ Nn  ++l
  KOO24466.1  3 AMRYLNLTTNNISGTL 18
                5789999888655655 PP

  == domain 2  score: 18.7 bits;  conditional E-value: 2.8e-07
                EE--SS---.E-S-.HHH-TT--EEE-.-S---.--GGGG CS
       LRR_4  6 LdLsnNqlt.dipl.leklpnLkeLdLsgNnli.tdldeL 42
                L+Ls N+lt ++pl +++l  L++L +++N  + ++l+ L
  KOO24466.1 31 LSLSENRLTgSVPLeIGSLSTLRHLRMHNN-ALnGNLTAL 69
                99*******887775557*********555.544888776 PP

  == domain 3  score: 12.3 bits;  conditional E-value: 2.9e-05
                --EEE--SS-....--E-S-HHH-TT--EEE-.-S CS
       LRR_4  3 LevLdLsnNq....ltdiplleklpnLkeLdLsgN 33
                L++L  +nN     lt ++ l++l +L ++dL  N
  KOO24466.1 52 LRHLRMHNNAlngnLTALSTLGGLRSLLTFDLYAN 86
                99*****9775666888888999*********666 PP

  == domain 4  score: 10.8 bits;  conditional E-value: 8.6e-05
                 --EEE--SS---.E-S-.HHH-TT--EEE-.-S CS
       LRR_4   3 LevLdLsnNqlt.dipl.leklpnLkeLdLsgN 33 
                 L + dL  N++  d+p+ ++ l +L++L+L +N
  KOO24466.1  78 LLTFDLYANHMHgDVPPsIQDLVSLQYLYL-DN 109
                 6778888779999****5555*********.77 PP

>> LRR_1  Leucine Rich Repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.7   0.0    0.0011       6.4       3      22 ..       5      24 ..       4      25 .. 0.89
   2 ?    0.4   0.0      0.28   1.6e+03       5      21 ..      31      47 ..      28      49 .. 0.76
   3 ?    3.1   0.6     0.035   2.1e+02       2      13 ..      52      64 ..      51      99 .. 0.72
   4 ?    3.3   0.0      0.03   1.8e+02       1      11 [.     101     111 ..     101     128 .. 0.72

  Alignments for each domain:
  == domain 1  score: 7.7 bits;  conditional E-value: 0.0011
       LRR_1  3 rhLdLsnnpllglppnsfqn 22
                r+L+L+ n+++g +p+s+ n
  KOO24466.1  5 RYLNLTTNNISGTLPPSIGN 24
                89***999999*****9987 PP

  == domain 2  score: 0.4 bits;  conditional E-value: 0.28
       LRR_1  5 LdLsnnpllglppnsfq 21
                L Ls n+l+g  p  + 
  KOO24466.1 31 LSLSENRLTGSVPLEIG 47
                88999**9887776655 PP

  == domain 3  score: 3.1 bits;  conditional E-value: 0.035
       LRR_1  2 LrhLdLsnnpl.l 13
                LrhL + nn l +
  KOO24466.1 52 LRHLRMHNNALnG 64
                9999999998741 PP

  == domain 4  score: 3.3 bits;  conditional E-value: 0.03
       LRR_1   1 nLrhLdLsnnp 11 
                 +L++L+L n++
  KOO24466.1 101 SLQYLYLDNQH 111
                 69*****9987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (168 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       303  (0.0169); expected 358.6 (0.02)
Passed bias filter:                      274  (0.0152825); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.38u 0.23s 00:00:00.61 Elapsed: 00:00:00.38
# Mc/sec: 1318.14
//
Query:       KOO24467.1  [L=279]
Description: tpr domain protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
     0.0017   18.2   0.0     0.0029   17.4   0.0    1.5  1  Methyltransf_23  Methyltransferase domain
  ------ inclusion threshold ------
       0.02   15.6   0.0      0.039   14.7   0.0    1.5  1  Methyltransf_12  Methyltransferase domain
       0.12   13.0   0.0        0.3   11.8   0.0    1.7  1  Methyltransf_11  Methyltransferase domain
       0.13   11.9   0.0       0.76    9.3   0.0    2.0  2  MetW             Methionine biosynthesis protein MetW
        1.6    8.9   6.4        3.3    7.9   6.4    1.4  1  PT-VENN          Pre-toxin domain with VENN motif


Domain annotation for each model (and alignments):
>> Methyltransf_23  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.4   0.0   8.2e-07    0.0029       1     108 [.      68     207 ..      68     269 .. 0.63

  Alignments for each domain:
  == domain 1  score: 17.4 bits;  conditional E-value: 8.2e-07
  Methyltransf_23   1 ydaqreeelsdkler..llpklraggrvLdiGcGtGillevl...re......ngf..svt..gvDlspeaveiaekakkaqkdqfdeqeaaep 79 
                      y+++r+ +l    ++  l+ + ++ ++vLd+G +   + + l   ++      + f  +v+  g Dl +  +e+++++ +   +q+d  e+++ 
       KOO24467.1  68 YWRERRSYLIYRHQFciLMRYAPRAASVLDVGSALPPFVNALtwiQQrtilgpR-FagNVAkgGGDLFS--IERIRTKFNVTAVQADFLEWQP- 157
                      566666665555555224466789999999999999997766444222333332.12444444555553..3444422222222222222222. PP

  Methyltransf_23  80 qg.....................kfdlIvlrevlehvpdppellrqiatl 108
                       g                      fdl+ ++ev+eh+  p e +r++ ++
       KOO24467.1 158 PGwevaqapftlahaaapktvppVFDLVLCSEVIEHIATPREFVRKLLAI 207
                      22244444555566666666888*******************99998764 PP

>> Methyltransf_12  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.7   0.0   1.1e-05     0.039      65      89 ..     180     204 ..     137     207 .. 0.80

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 1.1e-05
  Methyltransf_12  65 ssfDlvvasnvlhhlkdirevldni 89 
                        fDlv++s+v++h++++re+++++
       KOO24467.1 180 PVFDLVLCSEVIEHIATPREFVRKL 204
                      37******************99986 PP

>> Methyltransf_11  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   8.4e-05       0.3      61      84 ..     181     204 ..     158     207 .. 0.88

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 8.4e-05
                      -EEEEEEES-CCC-CCHHHHHHHH CS
  Methyltransf_11  61 sfDlvvssevlhhvedpekalkei 84 
                       fDlv++sev++h++ p+++++++
       KOO24467.1 181 VFDLVLCSEVIEHIATPREFVRKL 204
                      5******************99975 PP

>> MetW  Methionine biosynthesis protein MetW
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.3   0.0       0.2     7e+02       1      23 [.      79     101 ..      79     118 .. 0.83
   2 ?    9.3   0.0   0.00021      0.76      75     110 ..     181     216 ..     176     222 .. 0.94

  Alignments for each domain:
  == domain 1  score: -0.3 bits;  conditional E-value: 0.2
        MetW   1 radfeliaelikpgsrvldlGcG 23 
                 r+ f +++++ +  + vld+G+ 
  KOO24467.1  79 RHQFCILMRYAPRAASVLDVGSA 101
                 67788999999999*******85 PP

  == domain 2  score: 9.3 bits;  conditional E-value: 0.00021
        MetW  75 sfdyvvlsqtlqatrnpkevldellrigrraivsfP 110
                  fd+v+ s  +  +  p+e +++ll ig+ +++s P
  KOO24467.1 181 VFDLVLCSEVIEHIATPREFVRKLLAIGDLVVLSVP 216
                 59*******************************999 PP

>> PT-VENN  Pre-toxin domain with VENN motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.9   6.4   0.00093       3.3      11      34 ..      11      33 ..      10      41 .. 0.81

  Alignments for each domain:
  == domain 1  score: 7.9 bits;  conditional E-value: 0.00093
     PT-VENN 11 tvsalstlaaGlaGgvvggtlada 34
                +v+++ tl+a++aG+v+g t+++a
  KOO24467.1 11 KVASIGTLLAAAAGAVTG-TTGTA 33
                799***************.55554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (279 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       332  (0.0185175); expected 358.6 (0.02)
Passed bias filter:                      272  (0.015171); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.44u 0.24s 00:00:00.68 Elapsed: 00:00:00.41
# Mc/sec: 2033.73
//
Query:       KOO24468.1  [L=136]
Description: ribosomal protein s20 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    4.5e-20   72.1   7.0    6.7e-20   71.5   7.0    1.3  1  Ribosomal_S20p  Ribosomal protein S20
  ------ inclusion threshold ------
       0.42   10.2   3.4        2.4    7.8   3.0    2.3  2  PhrC_PhrF       Rap-phr extracellular signalling
        5.7    6.8   6.3        1.9    8.3   1.7    2.5  2  LapA_dom        Lipopolysaccharide assembly protein A domain


Domain annotation for each model (and alignments):
>> Ribosomal_S20p  Ribosomal protein S20
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   71.5   7.0   1.1e-23   6.7e-20       7      82 .]      45     121 ..      41     121 .. 0.96

  Alignments for each domain:
  == domain 1  score: 71.5 bits;  conditional E-value: 1.1e-23
                     HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC.-HHHHHHHHHHHHHHHHHHHCTTSSTCCHHHHHHHHHHHHHH CS
  Ribosomal_S20p   7 kKrirqnekrrlrNrsyksavrtaiKkvraaiea.dkekaqealkkaiskidkaakkgvihkNtAaRkkSrlakkin 82 
                      K +++ne++r+ N++ ks++rt +K+v++ +e  d ++   +l+ka+  +dk +k+g++hkNtAaRkkS+l  k++
      KOO24468.1  45 TKPMKVNERNRIANKAHKSEMRTRVKRVQESLEVgDYASSSSLLSKAFAILDKNVKRGILHKNTAARKKSQLHLKVK 121
                     5889****************************889*************************************99885 PP

>> PhrC_PhrF  Rap-phr extracellular signalling
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.8   3.0    0.0004       2.4       6      21 ..       8      23 ..       5      37 .. 0.81
   2 ?   -0.1   0.0      0.12   7.1e+02      23      35 ..      41      53 ..      33      56 .. 0.80

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 0.0004
   PhrC_PhrF  6 lliCLAlaavFvAatv 21
                ll CL +aa FvA+  
  KOO24468.1  8 LLACLSVAAGFVATPL 23
                799***********75 PP

  == domain 2  score: -0.1 bits;  conditional E-value: 0.12
   PhrC_PhrF 23 ANAealdieVaeR 35
                  A++  ++V eR
  KOO24468.1 41 MAAPTKPMKVNER 53
                5699999999999 PP

>> LapA_dom  Lipopolysaccharide assembly protein A domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.3   1.7   0.00032       1.9      19      47 ..       6      33 ..       5      77 .. 0.72
   2 ?   -1.6   0.2      0.41   2.5e+03      47      59 ..     111     123 ..     101     126 .. 0.50

  Alignments for each domain:
  == domain 1  score: 8.3 bits;  conditional E-value: 0.00032
    LapA_dom 19 LsllllvafgiGallgwllslwsylrlrr 47
                L+ll  +++++G++++ l+s+ s+l++ r
  KOO24468.1  6 LCLLACLSVAAGFVATPLVSA-SQLQQSR 33
                789999***************.6776443 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 0.41
    LapA_dom  47 relrrlkkkikkl 59 
                 r+ ++l  k+kkl
  KOO24468.1 111 RKKSQLHLKVKKL 123
                 2223333344444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (136 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       919  (0.0512577); expected 358.6 (0.02)
Passed bias filter:                      374  (0.0208601); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.37u 0.27s 00:00:00.64 Elapsed: 00:00:00.40
# Mc/sec: 1026.01
//
Query:       KOO24469.1  [L=213]
Description: ras-related protein rab-21 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
      3e-53  179.7   0.0    3.5e-53  179.5   0.0    1.0  1  Ras          Ras family
    3.6e-32  111.1   0.0    7.3e-32  110.1   0.0    1.5  2  Roc          Ras of Complex, Roc, domain of DAPkinase
    1.4e-11   44.1   0.0    1.7e-11   43.9   0.0    1.1  1  Arf          ADP-ribosylation factor family
     0.0018   18.2   0.0       0.11   12.4   0.0    2.2  2  RsgA_GTPase  RsgA GTPase
     0.0047   17.0   0.0      0.018   15.1   0.0    1.8  2  MMR_HSR1     50S ribosome-binding GTPase
  ------ inclusion threshold ------
      0.066   12.6   0.0       0.19   11.2   0.0    1.7  1  SRPRB        Signal recognition particle receptor beta subuni
      0.076   12.5   0.0       0.13   11.7   0.0    1.4  1  GTP_EFTU     Elongation factor Tu GTP binding domain
       0.13   11.6   0.0       0.24   10.7   0.0    1.5  1  Gtr1_RagA    Gtr1/RagA G protein conserved region
       0.15   11.8   0.0       0.35   10.5   0.0    1.5  1  AAA_24       AAA domain


Domain annotation for each model (and alignments):
>> Ras  Ras family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  179.5   0.0   1.7e-56   3.5e-53       1     160 [.       9     168 ..       9     170 .. 0.98

  Alignments for each domain:
  == domain 1  score: 179.5 bits;  conditional E-value: 1.7e-56
                 EEEEEESTTSSHHHHHHHHHHSSCSSSCTTTSSEEEEEEEEEETTEEEEEEEEEETTSGGGHHHHHHHHTTESEEEEEEETTBHHHHHTHHHHHHHHHH CS
         Ras   1 KlvlvGdsavGKtslllrfvkdkFkeeyesTigvdfytkeievdgkevkleiwDTAGqeefkslrelyyrdaegillvyditsresfenvkkwveeikr 99 
                 K+vl+G++ vGKtsl+lrf +d+F + + +Ti +  +++ +++ +k+v+l iwDTAGqe+f++l + yyrda+++llvydit+++sf++++ wv+e+++
  KOO24469.1   9 KVVLLGEGRVGKTSLVLRFCRDTFVDGQPPTIQASCLERALRLGDKTVNLVIWDTAGQERFHALGPIYYRDADAALLVYDITDTDSFKRIQVWVRELRK 107
                 9************************************************************************************************** PP

                 HSTTTSEEEEEEETTTGGGG-SS-HHHHHHHHHHHTSEEEEEBTTTTCTHHHHHHHHHHHH CS
         Ras 100 vaeenvpivLvGnKvDleekravsteegeelakelglkfletSAktnenveeafeellrei 160
                 ++ +++++ + GnK+Dle++r+vs++e+ e+a+++g+++ etSAk+n +++e+f ++ +++
  KOO24469.1 108 MVGDSIQLSIAGNKSDLERQRVVSRQEAAEYADSVGAHYAETSAKQNRGLDELFSSMGKRL 168
                 *******************************************************998876 PP

>> Roc  Ras of Complex, Roc, domain of DAPkinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  110.1   0.0   3.7e-35   7.3e-32       1     119 [.       9     123 ..       9     124 .. 0.89
   2 ?   -2.9   0.0       3.9   7.8e+03      18      43 ..     128     153 ..     127     159 .. 0.68

  Alignments for each domain:
  == domain 1  score: 110.1 bits;  conditional E-value: 3.7e-35
                 EEEEESSTTSSHHHHHHCHCT-CCC-EEETTTTEEEEEEECGGSGGCTTBTTTTCEEEEEEEE-SGGCTTTT-HHHHCTSCEEEEEEE...GHHHHCHH CS
         Roc   1 KvvlvGdsgvGKtsllkrfvedkfsekekstigvdfltkevtkikgvendkkvkkvklniWDtaGqerfrslhplylreaalailvyd...srssenlk 96 
                 Kvvl+G+++vGKtsl+ rf++d+f + + +ti+++ l++ + ++      +  k+v+l iWDtaGqerf++l p+y+r+a++a+lvyd   ++s+++++
  KOO24469.1   9 KVVLLGEGRVGKTSLVLRFCRDTFVDGQPPTIQASCLERAL-RLG-----D--KTVNLVIWDTAGQERFHALGPIYYRDADAALLVYDitdTDSFKRIQ 99 
                 9***********************************99876.332.....2..5799******************************97545567999* PP

                 HHHHHHHHHCSSS.-EEEEEE-TT CS
         Roc  97 eWlkelkkvagks.pvilvgnkiD 119
                  W++el+k++g+s ++ + gnk D
  KOO24469.1 100 VWVRELRKMVGDSiQLSIAGNKSD 123
                 *********99872566999**99 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 3.9
                 CHCT-CCC-EEETTTTEEEEEEECGG CS
         Roc  18 rfvedkfsekekstigvdfltkevtk 43 
                 r+v+++   ++   +g+ ++++++++
  KOO24469.1 128 RVVSRQEAAEYADSVGAHYAETSAKQ 153
                 66777777788888888887766544 PP

>> Arf  ADP-ribosylation factor family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.9   0.0   8.5e-15   1.7e-11      11     168 ..       4     161 ..       1     168 [. 0.76

  Alignments for each domain:
  == domain 1  score: 43.9 bits;  conditional E-value: 8.5e-15
                 .TTEEEEEEEESTTSSHHHHHHHHHHSSCEE.CSSSSSEEEEEEEE....TTEEEEEEEE-SSGGGGGGGGGGCTTESEEEEEEETT-CT...THHHHH CS
         Arf  11 kkkelrilllGLDnaGKtTilkklkleelvt.tvPTigfnveelei....knlkftvwDvGGqeklRplWknYfektdavifvvDsadre...Rleeak 101
                 ++ +++++llG    GKt ++ ++  + +v+ + PTi     e +     k++++ +wD  Gqe+   l   Y+++ da + v D +d++   R++   
  KOO24469.1   4 RTSSYKVVLLGEGRVGKTSLVLRFCRDTFVDgQPPTIQASCLERALrlgdKTVNLVIWDTAGQERFHALGPIYYRDADAALLVYDITDTDsfkRIQVWV 102
                 56789***********************99946689998765433334559****************************99999998886444777777 PP

                 HHHHHHCTSGCCTTSEEEEEEE-TTSTTSS-HHHHHHHTTGGGSSSSSSEEEEEEBTTTTBTHHHHH CS
         Arf 102 eeLkalleeeelkevallvlaNKqDlpealseeelrellgleelkgkrkleiqkcsavkgeglkegl 168
                 +eL++++ +    +++l + +NK Dl+ +   +  +++   +++      + +++sa +++gl+e +
  KOO24469.1 103 RELRKMVGD----SIQLSIAGNKSDLERQRVVSRQEAAEYADSVG----AHYAETSAKQNRGLDELF 161
                 888888875....588999******98765554444444444444....445566666666666655 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.0   0.0     0.021        41     100     118 ..       8      26 ..       1      53 [. 0.86
   2 !   12.4   0.0   5.7e-05      0.11      17     100 ..      81     167 ..      66     170 .. 0.79

  Alignments for each domain:
  == domain 1  score: 4.0 bits;  conditional E-value: 0.021
                  SEEEEECSTTSSHHHHHHH CS
  RsgA_GTPase 100 ktsvlvGqSGvGKStLina 118
                    +vl+G+  vGK++L+ +
   KOO24469.1   8 YKVVLLGEGRVGKTSLVLR 26 
                  5689************965 PP

  == domain 2  score: 12.4 bits;  conditional E-value: 5.7e-05
                  -EEEEEEESTT.TT--H.HHHHHHHHHHHHTT-EEEEEEE-GGG--HHH.HHHHHHHHHHHTTSEEEE--TTTHTTHHHHHHHCTTS CS
  RsgA_GTPase  17 dqllivvslke.pelsl.nlldrfLvlaeekgiepvivlnKiDlleeee.eleelkeelealgyevllvsaktkegleelkellkdk 100
                  d +l+v  +++ ++++  +   r L  +    i++ i+ nK Dl  ++  + +e +e   ++g +   +sak+++gl+el + + ++
   KOO24469.1  81 DAALLVYDITDtDSFKRiQVWVRELRKMVGDSIQLSIAGNKSDLERQRVvSRQEAAEYADSVGAHYAETSAKQNRGLDELFSSMGKR 167
                  5666666555313343313346889999999**************9999667777788889*******************9887765 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.0   9.1e-06     0.018       1      96 [.       9     101 ..       9     121 .. 0.66
   2 ?   -0.5   0.0      0.63   1.3e+03      37      70 ..     125     161 ..     105     175 .. 0.63

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 9.1e-06
                 EEEEEESTTSSHHHHHHHHHTSTEEESSSTTSSSSEEEEEEEETT..EEEEEEECGGCSSHHHHHHHHHHHHHHHHCTSEEEEEEETT.TTCSHHHHHH CS
    MMR_HSR1   1 evaivGrpNvGKStLinaltgekaivsdkpgtTrdinegrvklkg..keielvDtpGliegaseekglgkaflaleeadlillvvdas.eeklkpldee 96 
                 +v+++G   vGK++L+ + ++++   ++ p       e+ ++l++   +++++Dt+G  e   + + lg  + +  +ad++llv d++ ++++k+++  
  KOO24469.1   9 KVVLLGEGRVGKTSLVLRFCRDTFVDGQPPTIQASCLERALRLGDktVNLVIWDTAG-QE---RFHALGPIYYR--DADAALLVYDITdTDSFKRIQVW 101
                 6899****************98654444444444446666664442478999*****.44...33367777774..78999999998843344444333 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 0.63
                 EEEEEEETTEEEEEEECGGCSS....HHHHHHHHHHHH CS
    MMR_HSR1  37 negrvklkgkeielvDtpGlie....gaseekglgkaf 70 
                 ++ rv  +++  e +D +G  +    +a++++gl + f
  KOO24469.1 125 ERQRVVSRQEAAEYADSVG-AHyaetSAKQNRGLDELF 161
                 4445544556778889998.432334444554655544 PP

>> SRPRB  Signal recognition particle receptor beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   9.5e-05      0.19       3      86 ..       7      92 ..       5     137 .. 0.63

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 9.5e-05
                --EEEEE-STTSSHHHHHHHHHHSS---B---S.S-EEETTG.....GGTT-SEEEETT-GCCSHHHHHHHHHHGGEEEEEEEEETT CS
       SRPRB  3 kpavllvGlsdsGKTslftrLttdsvkktvtSq.essaalkv..ksekgskltliDfPGheklrqklleklkaksslkglvfvvDSt 86
                + +v+l+G    GKTsl  r   d++ + +    ++s+ ++    ++k  +l + D  G+e++   l   +   + +  lv+ +  t
  KOO24469.1  7 SYKVVLLGEGRVGKTSLVLRFCRDTFVDGQPPTiQASCLERAlrLGDKTVNLVIWDTAGQERFHA-LGPIYYRDADAALLVYDITDT 92
                56799*******************99998865545554444434478888888889999999864.332222333355555544444 PP

>> GTP_EFTU  Elongation factor Tu GTP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   6.7e-05      0.13      67     147 ..      53     137 ..      35     176 .. 0.70

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 6.7e-05
                 CSSEEEEEEEESSSGGGHHHHHHHHHT-SEEEEEEETTTB.....STHHHHHHHHHHHHTTTEEEEEEESCGSTHHHHHHHHHHHH CS
    GTP_EFTU  67 tkkylinliDtPGHvdFskevirglrvlDgavlvvdaveG.....vepqteevlrlalkegvpiivfiNKmDrlkaelkeiveevk 147
                  k+ ++ + Dt G + F       +r +D a+lv d+++      +++  +e lr +    +++ ++ NK D  ++++   +e+++
  KOO24469.1  53 DKTVNLVIWDTAGQERFHALGPIYYRDADAALLVYDITDTdsfkrIQVWVRE-LRKMVGDSIQLSIAGNKSDLERQRVVSRQEAAE 137
                 556667777*****************************88555433333333.567777889999999****99766655555544 PP

>> Gtr1_RagA  Gtr1/RagA G protein conserved region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   0.00012      0.24       1     102 [.       9     105 ..       9     154 .. 0.65

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00012
   Gtr1_RagA   1 kvLLmGksgsGKtsmrsiiF.dnylardtlrlgatidveksevrf.lgnltlnlwDcgGqeafveeylssqkeeifrnvgvliyVfDvesreleedlet 97 
                 kv+L+G+++ GKts+      d ++  +  +++a+    +  +r+  + ++l +wD  Gqe+f +          +r+ ++ + V D+++++  + ++ 
  KOO24469.1   9 KVVLLGEGRVGKTSLVLRFCrDTFVDGQPPTIQASC--LERALRLgDKTVNLVIWDTAGQERFHAL-----GPIYYRDADAALLVYDITDTDSFKRIQV 100
                 899***********9765441333333444444443..3334443156789**********99765.....3445566666666777776555555554 PP

   Gtr1_RagA  98 lkeil 102
                 +++ l
  KOO24469.1 101 WVREL 105
                 44444 PP

>> AAA_24  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.0   0.00018      0.35       2      25 ..       7      29 ..       6      40 .. 0.82

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00018
      AAA_24  2 klkiliyGpsgiGKTtlakelgpk 25
                ++k+++ G+  +GKT+l++++  +
  KOO24469.1  7 SYKVVLLGEGRVGKTSLVLRF-CR 29
                79*****************99.33 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (213 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       366  (0.0204139); expected 358.6 (0.02)
Passed bias filter:                      332  (0.0185175); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.45u 0.24s 00:00:00.69 Elapsed: 00:00:00.41
# Mc/sec: 1554.39
//
Query:       KOO24470.1  [L=278]
Description: ubiquitin fusion degradation 1, partial [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.3e-66  223.4   0.0    1.5e-66  223.2   0.0    1.1  1  UFD1      Ubiquitin fusion degradation protein UFD1


Domain annotation for each model (and alignments):
>> UFD1  Ubiquitin fusion degradation protein UFD1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  223.2   0.0   8.3e-71   1.5e-66       1     173 []       7     194 ..       7     194 .. 0.95

  Alignments for each domain:
  == domain 1  score: 223.2 bits;  conditional E-value: 8.3e-71
        UFD1   1 feekyrcysvsm.....kaereelekggkiiLPpsaLdeLtrlnieyPmlFelsnkkkkk.sthagVleFtaeegtvylPewmmenlgleegdlveies 93 
                 f +++r+ svs+     +++ ++le+++kiiLPps+L++L++l+++yP++Fel+n++  + + h+gVleF+a+eg+vylP+wmmen++l+egd+v+++s
  KOO24470.1   7 FADSFRVHSVSLlaaetHRDPTRLEYSDKIILPPSCLEKLAHLEVQYPLMFELTNPRYVQrRLHCGVLEFIAQEGMVYLPYWMMENMHLNEGDIVHLKS 105
                 66788999999888876667789*********************************65555************************************** PP

        UFD1  94 vslpkgkfvklqpqsedfldisdpkavLekaLrnfatLtkgdvieikyndkvyelkvlevkpes.........avsiietdlevdfaeP 173
                 +sl+kg+fvklqpq++df+++s+pkavLe++Lr+f++Ltkg++++i yn+k+y++ v+ev+pe          av+iie+d+evdf++P
  KOO24470.1 106 ASLQKGRFVKLQPQTTDFIKVSNPKAVLEQSLRHFSALTKGETFRILYNKKKYDIGVVEVRPEGapfapgapeAVCIIEADVEVDFDAP 194
                 *************************************************************9999999999***************998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (278 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       291  (0.0162307); expected 358.6 (0.02)
Passed bias filter:                      273  (0.0152267); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.25s 00:00:00.68 Elapsed: 00:00:00.41
# Mc/sec: 2037.85
//
Query:       KOO24471.1  [L=55]
Description: hypothetical protein Ctob_000421 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (55 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       239  (0.0133304); expected 358.6 (0.02)
Passed bias filter:                      144  (0.00803168); expected 358.6 (0.02)
Passed Vit filter:                         5  (0.000278878); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.24s 00:00:00.55 Elapsed: 00:00:00.38
# Mc/sec: 433.54
//
Query:       KOO24472.1  [L=52]
Description: hypothetical protein Ctob_000422, partial [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (52 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       156  (0.00870099); expected 358.6 (0.02)
Passed bias filter:                      140  (0.00780858); expected 358.6 (0.02)
Passed Vit filter:                         8  (0.000446204); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.19s 00:00:00.51 Elapsed: 00:00:00.35
# Mc/sec: 448.31
//
Query:       KOO24473.1  [L=152]
Description: sin3b protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.4e-17   63.6   1.2    2.1e-17   63.0   1.2    1.3  1  PAH       Paired amphipathic helix repeat
  ------ inclusion threshold ------
      0.072   12.3   0.1      0.089   12.0   0.1    1.1  1  XendoU    Endoribonuclease XendoU


Domain annotation for each model (and alignments):
>> PAH  Paired amphipathic helix repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.0   1.2   2.4e-21   2.1e-17       1      45 []      45      89 ..      45      89 .. 0.99

  Alignments for each domain:
  == domain 1  score: 63.0 bits;  conditional E-value: 2.4e-21
         PAH  1 evYkeFLdiLhdyqkeqidskeVyeqVskLFhdhpdLlreFnqFL 45
                e+Yk+FL+iLh+yqkeq++ keV eqVs+L++ h dL  +Fn+FL
  KOO24473.1 45 ETYKAFLEILHTYQKEQKTVKEVKEQVSQLLEHHGDLTLGFNRFL 89
                89******************************************8 PP

>> XendoU  Endoribonuclease XendoU
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.1   9.9e-06     0.089      48      86 ..      34      73 ..      13      79 .. 0.80

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 9.9e-06
      XendoU 48 skvneekl.kkptyaafiaLldnYeadtgvaeevteeerk 86
                 kv++    + +ty+af+++l  Y++++++ +ev+e+ ++
  KOO24473.1 34 RKVKTRFAkEPETYKAFLEILHTYQKEQKTVKEVKEQVSQ 73
                456666665669****************999988887555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (152 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1397  (0.0779185); expected 358.6 (0.02)
Passed bias filter:                     1126  (0.0628033); expected 358.6 (0.02)
Passed Vit filter:                       119  (0.00663729); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.42u 0.26s 00:00:00.68 Elapsed: 00:00:00.36
# Mc/sec: 1256.50
//
Query:       KOO24474.1  [L=804]
Description: udp-sugar pyrophospharylase-like protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.4e-11   42.9   0.0      7e-11   41.4   0.0    1.6  2  UDPGP     UTP--glucose-1-phosphate uridylyltransferase


Domain annotation for each model (and alignments):
>> UDPGP  UTP--glucose-1-phosphate uridylyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.4   0.0   3.9e-15     7e-11      53     192 ..     123     272 ..     106     276 .. 0.82
   2 ?   -2.3   0.0     0.071   1.3e+03     268     316 ..     369     417 ..     368     420 .. 0.87

  Alignments for each domain:
  == domain 1  score: 41.4 bits;  conditional E-value: 3.9e-15
       UDPGP  53 klavlkLnGglGtsmGckgpKslieVr..dgktfLdlivqqie......elnkkynvdvPlvlmnSfnTdedtekilk..kykk.kkvdiltfnqsryP 140
                 +l  + ++Gg+G ++G +g K  ++ +  +g   L+    +i       + +    v++Pl +m+S +T+++t+++l+  +y++    +++ + q+++ 
  KOO24474.1 123 RLGFVVVAGGVGERLGYSGIKLSLPCEivSGIPVLQHYCAHIVslqsllTERLGRAVRLPLAIMTSHETHARTQQMLQanHYFGlAPSQVTLLLQKNVA 221
                 56677889***********99665443337777777666666533333367778899*********************99999999999*999****99 PP

       UDPGP 141 riskesllpvekkakkeekeewyPpGhGdlyesLknsglldkllaeGkeyiF 192
                 ++   s   + +  +   + +  P GhGd+   L+++gl  +  +eG +++F
  KOO24474.1 222 ALADASAKLALEPGS-PYRVQTKPHGHGDVHALLHATGLAARWAREGVSWLF 272
                 998777666655554.5679*******************************9 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 0.071
       UDPGP 268 ntnniwinlkalkrlveekelkleiivnkktldegekviqletavgaai 316
                 ntn i + +    ++++  + +++  vn+k++d++++v++  t +   +
  KOO24474.1 369 NTNGILLAMAPYLEVLKATRGQVDEFVNPKYTDHSRTVFKSSTRLECLM 417
                 8999999999999999999**************9999999888776655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (804 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       664  (0.037035); expected 358.6 (0.02)
Passed bias filter:                      396  (0.0220871); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.63u 0.27s 00:00:00.90 Elapsed: 00:00:00.43
# Mc/sec: 5592.42
//
Query:       KOO24475.1  [L=270]
Description: e radial spoke protein 7-like protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
      8e-25   84.5   7.3    1.9e-06   27.0   0.1    4.5  4  EF-hand_1     EF hand
      4e-22   76.2   6.2    9.1e-05   22.1   0.2    4.4  4  EF-hand_6     EF-hand domain
    2.5e-19   69.5   5.2    2.1e-09   37.7   0.5    2.4  2  EF-hand_7     EF-hand domain pair
    2.6e-19   67.8   0.9     0.0015   17.9   0.0    4.7  4  EF-hand_5     EF hand
    4.5e-15   55.2   2.8    5.5e-07   29.3   0.0    3.6  3  EF-hand_8     EF-hand domain pair
    4.9e-09   36.5   4.4     0.0015   18.8   0.7    2.6  3  SPARC_Ca_bdg  Secreted protein acidic and rich in cysteine Ca
    9.1e-06   25.6   1.7     0.0023   17.8   0.2    2.8  3  EF-hand_4     Cytoskeletal-regulatory complex EF hand
    0.00063   19.6   1.7       0.55   10.1   0.1    3.1  4  EF-hand_10    EF hand
     0.0018   16.9   0.0     0.0038   15.8   0.0    1.5  2  DUF5580       Family of unknown function (DUF5580)
  ------ inclusion threshold ------
      0.011   15.9   2.8       0.16   12.1   2.1    2.4  2  PBP_GOBP      PBP/GOBP family
       0.05   13.8   0.0        1.1    9.5   0.0    2.9  2  PMBR          Pseudomurein-binding repeat
       0.17   12.0   1.8         49    4.1   0.2    3.6  3  DUF4113       Domain of unknown function (DUF4113)
        1.4    9.2   4.2          3    8.1   1.6    2.6  2  Toprim        Toprim domain
          5    7.6   6.4         21    5.6   1.2    2.6  2  GLTSCR1       Conserved region of unknown function on GLTSCR 


Domain annotation for each model (and alignments):
>> EF-hand_1  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.6   0.2   3.4e-07   0.00044       3      27 ..      35      59 ..      33      61 .. 0.90
   2 !   22.7   0.1   3.6e-08   4.6e-05       2      22 ..      70      90 ..      69      92 .. 0.94
   3 !   16.9   0.0   2.6e-06    0.0033       2      27 ..     160     185 ..     159     187 .. 0.90
   4 !   27.0   0.1   1.5e-09   1.9e-06       2      28 ..     196     222 ..     195     223 .. 0.92

  Alignments for each domain:
  == domain 1  score: 19.6 bits;  conditional E-value: 3.4e-07
                HHHHHHHTTTSSSEEEHHHHHHHHH CS
   EF-hand_1  3 keiFrefDkDgdGkIdfeEfkellk 27
                 ++F+ +D D++G+++ +E+ ++l 
  KOO24475.1 35 FKAFQYIDLDHSGTLNEKELAQALD 59
                689******************9985 PP

  == domain 2  score: 22.7 bits;  conditional E-value: 3.6e-08
                HHHHHHHHTTTSSSEEEHHHH CS
   EF-hand_1  2 lkeiFrefDkDgdGkIdfeEf 22
                lkei++  D DgdG Id++Ef
  KOO24475.1 70 LKEIIAACDADGDGSIDYKEF 90
                89******************* PP

  == domain 3  score: 16.9 bits;  conditional E-value: 2.6e-06
                 HHHHHHHHTTTSSSEEEHHHHHHHHH CS
   EF-hand_1   2 lkeiFrefDkDgdGkIdfeEfkellk 27 
                 ++++F+++D D +G+++ +E+ +++ 
  KOO24475.1 160 MRKAFQDLDLDASGTLSPKELYHAFD 185
                 589******************99875 PP

  == domain 4  score: 27.0 bits;  conditional E-value: 1.5e-09
                 HHHHHHHHTTTSSSEEEHHHHHHHHHH CS
   EF-hand_1   2 lkeiFrefDkDgdGkIdfeEfkellkk 28 
                 ++ i++  DkDg+G I++eEf+++l++
  KOO24475.1 196 FQSIIDACDKDGNGSISYEEFVDVLAR 222
                 7899*******************9975 PP

>> EF-hand_6  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.1   0.2   7.1e-08   9.1e-05       2      27 ..      34      59 ..      33      66 .. 0.92
   2 !   14.3   0.0   2.2e-05     0.028       2      23 ..      70      91 ..      69      98 .. 0.86
   3 !   19.5   0.1   4.7e-07    0.0006       2      27 ..     160     185 ..     159     192 .. 0.92
   4 !   20.7   0.0     2e-07   0.00026       2      27 ..     196     221 ..     195     231 .. 0.88

  Alignments for each domain:
  == domain 1  score: 22.1 bits;  conditional E-value: 7.1e-08
   EF-hand_6  2 lreaFklfDkdgdGkidaeElrkalr 27
                + +aF+++D d++G+++ +El +al 
  KOO24475.1 34 MFKAFQYIDLDHSGTLNEKELAQALD 59
                889*********************97 PP

  == domain 2  score: 14.3 bits;  conditional E-value: 2.2e-05
   EF-hand_6  2 lreaFklfDkdgdGkidaeElr 23
                l+e+  + D dgdG+id++E+ 
  KOO24475.1 70 LKEIIAACDADGDGSIDYKEFA 91
                77888899************94 PP

  == domain 3  score: 19.5 bits;  conditional E-value: 4.7e-07
   EF-hand_6   2 lreaFklfDkdgdGkidaeElrkalr 27 
                 +r+aF+ +D d +G+++++El +a+ 
  KOO24475.1 160 MRKAFQDLDLDASGTLSPKELYHAFD 185
                 89********************9986 PP

  == domain 4  score: 20.7 bits;  conditional E-value: 2e-07
   EF-hand_6   2 lreaFklfDkdgdGkidaeElrkalr 27 
                 ++++ ++ Dkdg+G+i++eE++++l 
  KOO24475.1 196 FQSIIDACDKDGNGSISYEEFVDVLA 221
                 7888999****************997 PP

>> EF-hand_7  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.7   0.5   1.7e-12   2.1e-09       1      66 [.      31      90 ..      31      92 .. 0.95
   2 !   33.8   0.4   2.6e-11   3.4e-08       2      68 ..     158     218 ..     157     221 .. 0.88

  Alignments for each domain:
  == domain 1  score: 37.7 bits;  conditional E-value: 1.7e-12
   EF-hand_7  1 eeklkeaFkelDtdgdgyldkeellrllrkifqgagegsklsdeelellfkefDtdkdGvisfdEF 66
                +++++ aF+ +D d++g l++ el ++l         +++l++++l++++   D d+dG+i++ EF
  KOO24475.1 31 FKDMFKAFQYIDLDHSGTLNEKELAQALD------MFNVPLDKKKLKEIIAACDADGDGSIDYKEF 90
                578999*****************999999......779**************************** PP

  == domain 2  score: 33.8 bits;  conditional E-value: 2.6e-11
   EF-hand_7   2 eklkeaFkelDtdgdgyldkeellrllrkifqgagegsklsdeelellfkefDtdkdGvisfdEFlk 68 
                 + ++ aF+ lD d +g l++ el +++       + +  +++   + +++  D+d++G+is++EF+ 
  KOO24475.1 158 SNMRKAFQDLDLDASGTLSPKELYHAFD------RFNLQMDRGRFQSIIDACDKDGNGSISYEEFVD 218
                 678999****************777887......56677788889********************86 PP

>> EF-hand_5  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.0   4.3e-06    0.0055       2      23 ..      36      56 ..      35      58 .. 0.88
   2 !   14.2   0.0   1.7e-05     0.022       8      21 ..      77      90 ..      70      95 .. 0.84
   3 !   17.9   0.0   1.2e-06    0.0015       2      22 ..     161     181 ..     160     184 .. 0.91
   4 !   14.4   0.1   1.5e-05      0.02       6      23 ..     201     218 ..     196     220 .. 0.82

  Alignments for each domain:
  == domain 1  score: 16.2 bits;  conditional E-value: 4.3e-06
                HHHHHHH-SS-SSCE-HHHHHH CS
   EF-hand_5  2 kdtFqaiDlNgDGkIskeELkt 23
                k+ Fq iDl+++G+++  EL +
  KOO24475.1 36 KA-FQYIDLDHSGTLNEKELAQ 56
                55.****************975 PP

  == domain 2  score: 14.2 bits;  conditional E-value: 1.7e-05
                H-SS-SSCE-HHHH CS
   EF-hand_5  8 iDlNgDGkIskeEL 21
                 D++gDG I+  E+
  KOO24475.1 77 CDADGDGSIDYKEF 90
                5************9 PP

  == domain 3  score: 17.9 bits;  conditional E-value: 1.2e-06
                 HHHHHHH-SS-SSCE-HHHHH CS
   EF-hand_5   2 kdtFqaiDlNgDGkIskeELk 22 
                 +++Fq +Dl+ +G++s+ EL+
  KOO24475.1 161 RKAFQDLDLDASGTLSPKELY 181
                 788*****************8 PP

  == domain 4  score: 14.4 bits;  conditional E-value: 1.5e-05
                 HHH-SS-SSCE-HHHHHH CS
   EF-hand_5   6 qaiDlNgDGkIskeELkt 23 
                 +a D++g G Is eE+  
  KOO24475.1 201 DACDKDGNGSISYEEFVD 218
                 566************965 PP

>> EF-hand_8  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.3   0.1   0.00076      0.97      32      52 ..      38      58 ..      10      61 .. 0.76
   2 !   15.9   0.1   6.8e-06    0.0087      16      48 ..      60      90 ..      54      91 .. 0.84
   3 !   29.3   0.0   4.3e-10   5.5e-07       2      54 ..     172     222 ..     171     223 .. 0.94

  Alignments for each domain:
  == domain 1  score: 9.3 bits;  conditional E-value: 0.00076
   EF-hand_8 32 frefDtdgdGkisfeEFcvll 52
                f ++D+d++G+++ +E  + l
  KOO24475.1 38 FQYIDLDHSGTLNEKELAQAL 58
                6678************98876 PP

  == domain 2  score: 15.9 bits;  conditional E-value: 6.8e-06
   EF-hand_8 16 ilglkkglseeevdilfrefDtdgdGkisfeEF 48
                ++  +  l ++++ +++ + D dgdG i+++EF
  KOO24475.1 60 MFNVP--LDKKKLKEIIAACDADGDGSIDYKEF 90
                55556..8999999******************* PP

  == domain 3  score: 29.3 bits;  conditional E-value: 4.3e-10
   EF-hand_8   2 kgkItreelrrilrilglkkglseeevdilfrefDtdgdGkisfeEFcvller 54 
                 +g +++ el+++   + l+  +    +++++++ D dg+G is+eEF+++l+r
  KOO24475.1 172 SGTLSPKELYHAFDRFNLQ--MDRGRFQSIIDACDKDGNGSISYEEFVDVLAR 222
                 6999*******99777***..***************************99876 PP

>> SPARC_Ca_bdg  Secreted protein acidic and rich in cysteine Ca binding region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.8   0.7   1.2e-06    0.0015      31     111 ..      10      91 ..       1      92 [. 0.63
   2 !   18.6   0.1   1.4e-06    0.0018      24     111 ..     128     217 ..     102     219 .. 0.76
   3 ?   -2.8   0.0       6.3     8e+03      68      94 ..     227     251 ..     223     265 .. 0.58

  Alignments for each domain:
  == domain 1  score: 18.8 bits;  conditional E-value: 1.2e-06
  SPARC_Ca_bdg  31 eeekehleelekkeeeknlkeckepvawkFsklDtnsdkvlsksELap.lraplvkle.hCikpflescDadkdkkislkEwc 111
                   + e  ++++++ +++    ++  + +   F+ +D ++ ++l+++ELa+ l +  v+l+ +  k+ + +cDad d++i+ kE++
    KOO24475.1  10 KMEALKKSSMVMQAQD-AINNKFKDMFKAFQYIDLDHSGTLNEKELAQaLDMFNVPLDkKKLKEIIAACDADGDGSIDYKEFA 91 
                   2222222333333333.3333334445578899999**********86355555666624689******************96 PP

  == domain 2  score: 18.6 bits;  conditional E-value: 1.4e-06
  SPARC_Ca_bdg  24 leelkereeekehleelekkeeeknlkeckepvawkFsklDtnsdkvlsksELapl.raplvklehC.ikpflescDadkdkkislkEwc 111
                   ++ +++   ++e++++ + ++ ++  ++  ++++  F++lD +  ++ls +EL +       ++++   +  +++cD d +++is +E++
    KOO24475.1 128 MAASANAPVQTEAQKKAALNQARDAINAKFSNMRKAFQDLDLDASGTLSPKELYHAfDRFNLQMDRGrFQSIIDACDKDGNGSISYEEFV 217
                   344444444556777777778888888888899999*****************8762333345665427889****************97 PP

  == domain 3  score: -2.8 bits;  conditional E-value: 6.3
  SPARC_Ca_bdg  68 dkvlsksELaplraplvklehCikpfl 94 
                   d  + k+ L+++ a  + +e+  k+fl
    KOO24475.1 227 DAAMGKRGLQAIDA--MGVESLDKEFL 251
                   56666666666666..55555545444 PP

>> EF-hand_4  Cytoskeletal-regulatory complex EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.8   0.2   1.8e-06    0.0023      11      67 ..      30      92 ..      19      98 .. 0.74
   2 ?   -1.9   0.0       2.5   3.2e+03      43      60 ..     158     175 ..     115     193 .. 0.53
   3 !    6.1   0.1     0.008        10      37      66 ..     188     217 ..     162     228 .. 0.86

  Alignments for each domain:
  == domain 1  score: 17.8 bits;  conditional E-value: 1.8e-06
   EF-hand_4 11 kyweifsglk....pednkltgdkvapvl..knskleedklekiwdladidedgkldfeefci 67
                k+ ++f++ +    +++ +l+++++a+ l   n  l+++kl++i   +d d dg++d++ef++
  KOO24475.1 30 KFKDMFKAFQyidlDHSGTLNEKELAQALdmFNVPLDKKKLKEIIAACDADGDGSIDYKEFAL 92
                555555555422123456788888887762258899*************************97 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 2.5
   EF-hand_4  43 dklekiwdladidedgkl 60 
                 +++ k ++  d+d  g+l
  KOO24475.1 158 SNMRKAFQDLDLDASGTL 175
                 233444444455555555 PP

  == domain 3  score: 6.1 bits;  conditional E-value: 0.008
   EF-hand_4  37 nskleedklekiwdladidedgkldfeefc 66 
                 n +++  ++++i d +d d +g++ +eef+
  KOO24475.1 188 NLQMDRGRFQSIIDACDKDGNGSISYEEFV 217
                 5567778899*******************8 PP

>> EF-hand_10  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.3   0.0      0.25   3.2e+02      26      43 ..      37      54 ..      32      56 .. 0.87
   2 !   10.1   0.1   0.00043      0.55       3      43 ..      50      90 ..      48      92 .. 0.94
   3 ?    0.5   0.0      0.44   5.7e+02      25      45 ..     162     182 ..     160     187 .. 0.83
   4 !    7.2   0.1    0.0034       4.4       2      44 ..     175     217 ..     174     221 .. 0.91

  Alignments for each domain:
  == domain 1  score: 1.3 bits;  conditional E-value: 0.25
  EF-hand_10 26 LFkkcDkSksgrLegeEi 43
                 F+  D  +sg+L+++E+
  KOO24475.1 37 AFQYIDLDHSGTLNEKEL 54
                69999999*******997 PP

  == domain 2  score: 10.1 bits;  conditional E-value: 0.00043
  EF-hand_10  3 sfkEvkrlLreiNievddeYAekLFkkcDkSksgrLegeEi 43
                + kE+ + L + N+ +d +  +++   cD   +g+++ +E+
  KOO24475.1 50 NEKELAQALDMFNVPLDKKKLKEIIAACDADGDGSIDYKEF 90
                669**********************************9998 PP

  == domain 3  score: 0.5 bits;  conditional E-value: 0.44
  EF-hand_10  25 kLFkkcDkSksgrLegeEiee 45 
                 k F+  D  +sg+L  +E+ +
  KOO24475.1 162 KAFQDLDLDASGTLSPKELYH 182
                 669999*********999876 PP

  == domain 4  score: 7.2 bits;  conditional E-value: 0.0034
  EF-hand_10   2 msfkEvkrlLreiNievddeYAekLFkkcDkSksgrLegeEie 44 
                 +s kE+ +     N+++d    +++   cDk  +g++  eE++
  KOO24475.1 175 LSPKELYHAFDRFNLQMDRGRFQSIIDACDKDGNGSISYEEFV 217
                 5778999999999************************999986 PP

>> DUF5580  Family of unknown function (DUF5580)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.5   0.0      0.13   1.7e+02     473     505 ..      25      58 ..       7      69 .. 0.76
   2 !   15.8   0.0     3e-06    0.0038     200     389 ..      36     224 ..      21     266 .. 0.69

  Alignments for each domain:
  == domain 1  score: 0.5 bits;  conditional E-value: 0.13
     DUF5580 473 etWidRFrkLenaLylCDlsntGvl.ekerarRL 505
                 +   ++F+ + +a    Dl+++G l eke a+ L
  KOO24475.1  25 DAINNKFKDMFKAFQYIDLDHSGTLnEKELAQAL 58 
                 4556789999999999999999998677777655 PP

  == domain 2  score: 15.8 bits;  conditional E-value: 3e-06
     DUF5580 200 keLkilDPissGfllqsqlsrlflrhevPLqlPtvklLcqrFsrkgspelvnyeklLlfLk..eaasde.lqqsktvvdsnpkktesssdek.stapqd 294
                 k  + +D + sG l   +l++ +  ++vPL+   +k ++   +  +    + y+++ l  +  e  s+e l+++ +  ++n k t +++ e+  +a+ +
  KOO24475.1  36 KAFQYIDLDHSGTLNEKELAQALDMFNVPLDKKKLKEIIAA-CDADGDGSIDYKEFALEAMgvESLSKEfLKNEGNRFYKNDKATINKDYETmMAASAN 133
                 55677777788888888888888888888888887776654.455555667776643322200233333123333334444444322222222222222 PP

     DUF5580 295 sssesevnkslleiLkmalktakgklnl..enLnlsFrkeDrsfsGlLpppkvraiCgkhglyltlslletllnhqdlgyqdeikWqnfvelLsras 389
                 +  + e++       k al++a++++n    n++ +F++ D   sG+L+p+++    ++  l +    + ++++  d   ++ i +++fv++L r  
  KOO24475.1 134 APVQTEAQ------KKAALNQARDAINAkfSNMRKAFQDLDLDASGTLSPKELYHAFDRFNLQMDRGRFQSIIDACDKDGNGSISYEEFVDVLARDT 224
                 33333333......36678888888775226999***********************************************************9964 PP

>> PBP_GOBP  PBP/GOBP family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   2.1   0.00013      0.16      25     101 ..       6      89 ..       1      95 [. 0.68
   2 ?    1.7   0.0      0.22   2.8e+02      70      91 ..     184     205 ..     168     217 .. 0.66

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 0.00013
                 S-TTHHHHHHTT-S..SS-HHHHHHHHHHHHHTTCBETT..SSBBHHHHHHHHHHHTC...HHHHHHHHHHHHHHSTTSSSHHH CS
    PBP_GOBP  25 vsdesleklkkgef..pdddelkcfikCilkkfglmded..gklnedklveqlekmfs...eekvkkvvekCeeakkavkdkce 101
                 ++++++e+lkk+++  +++d  +  +k ++k+f+++d d  g+lne++l + l++ +    ++k+k+++++C++  ++  d  e
  KOO24475.1   6 AKKKKMEALKKSSMvmQAQDAINNKFKDMFKAFQYIDLDhsGTLNEKELAQALDMFNVpldKKKLKEIIAACDADGDGSIDYKE 89 
                 66667777777444323333336666779*******966679999999988888754499999*********554444444555 PP

  == domain 2  score: 1.7 bits;  conditional E-value: 0.22
                 HHHHHHHTCHHHHHHHHHHHHH CS
    PBP_GOBP  70 veqlekmfseekvkkvvekCee 91 
                  + ++ ++++ ++++++++C++
  KOO24475.1 184 FDRFNLQMDRGRFQSIIDACDK 205
                 344556666889********22 PP

>> PMBR  Pseudomurein-binding repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.4   0.0      0.68   8.7e+02       1      16 [.     171     186 ..     171     192 .. 0.83
   2 ?    9.5   0.0   0.00087       1.1       1      16 [.     207     222 ..     207     222 .. 0.92

  Alignments for each domain:
  == domain 1  score: 0.4 bits;  conditional E-value: 0.68
        PMBR   1 gsgkisyeeyldmasr 16 
                 +sg++s+ e+  ++ r
  KOO24475.1 171 ASGTLSPKELYHAFDR 186
                 59*******9888766 PP

  == domain 2  score: 9.5 bits;  conditional E-value: 0.00087
        PMBR   1 gsgkisyeeyldmasr 16 
                 g+g+isyee++d+++r
  KOO24475.1 207 GNGSISYEEFVDVLAR 222
                 589**********998 PP

>> DUF4113  Domain of unknown function (DUF4113)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.1   0.2     0.038        49       3      14 ..      20      31 ..      18      36 .. 0.89
   2 ?    3.3   0.1     0.069        89       2      16 ..     145     159 ..     144     165 .. 0.86
   3 ?    1.3   0.0      0.29   3.7e+02       2      17 ..     179     194 ..     178     198 .. 0.87

  Alignments for each domain:
  == domain 1  score: 4.1 bits;  conditional E-value: 0.038
     DUF4113  3 LmkalDaiNrrf 14
                 m+a DaiN++f
  KOO24475.1 20 VMQAQDAINNKF 31
                6*********98 PP

  == domain 2  score: 3.3 bits;  conditional E-value: 0.069
     DUF4113   2 rLmkalDaiNrrfGr 16 
                 +L +a DaiN++f +
  KOO24475.1 145 ALNQARDAINAKFSN 159
                 7999********975 PP

  == domain 3  score: 1.3 bits;  conditional E-value: 0.29
     DUF4113   2 rLmkalDaiNrrfGrg 17 
                 +L +a+D+ N ++ rg
  KOO24475.1 179 ELYHAFDRFNLQMDRG 194
                 6899********9998 PP

>> Toprim  Toprim domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.1   1.6    0.0023         3       8      77 ..       5      84 ..       1     115 [. 0.62
   2 ?    0.8   0.1      0.44   5.6e+02      55      76 ..     184     209 ..     114     229 .. 0.59

  Alignments for each domain:
  == domain 1  score: 8.1 bits;  conditional E-value: 0.0023
                HHHHHHHHHTHTSTEEEEEEESSSSEEEHSTTEEEEE..........ECTTTHHHHHH..HHHHHHHHSEEEEECSSSHHHH CS
      Toprim  8 psdaktiakalgsgfqavtaslGhildletefkpvye..........eiedkkkvlka..lkelakradeiilatDpDreGe 77
                 ++ k+++ +  ++  +v+  +  i +  ++++++++          + ++  ++l++  +   +k+ +eii a+D+D +G+
  KOO24475.1  5 AAKKKKMEAL--KKSSMVMQAQDAINNKFKDMFKAFQyidldhsgtlNEKELAQALDMfnVPLDKKKLKEIIAACDADGDGS 84
                5555555555..333333333333333333444444477777774333333333333333444459999**********996 PP

  == domain 2  score: 0.8 bits;  conditional E-value: 0.44
                 H....HHHHHHHHSEEEEECSSSHHH CS
      Toprim  55 a....lkelakradeiilatDpDreG 76 
                 +    l++ + r + ii a+D D  G
  KOO24475.1 184 FdrfnLQMDRGRFQSIIDACDKDGNG 209
                 13333555555566666666666655 PP

>> GLTSCR1  Conserved region of unknown function on GLTSCR protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.6   1.2     0.017        21      41      99 ..      12      72 ..       1      75 [. 0.76
   2 ?    4.5   0.3     0.037        47      42      96 ..     141     195 ..      85     201 .. 0.82

  Alignments for each domain:
  == domain 1  score: 5.6 bits;  conditional E-value: 0.017
     GLTSCR1 41 e..kadeefekvaeellkrfqklenkfrklllkeakrespseeevmlerllleeerrelee 99
                e  k+ +++ ++ + + ++f+++++ f+++ l ++   +++e +  l+++ +  ++++l+e
  KOO24475.1 12 EalKKSSMVMQAQDAINNKFKDMFKAFQYIDLDHSGTLNEKELAQALDMFNVPLDKKKLKE 72
                222446667777777899*****************99999999999999888888888877 PP

  == domain 2  score: 4.5 bits;  conditional E-value: 0.037
     GLTSCR1  42 kadeefekvaeellkrfqklenkfrklllkeakrespseeevmlerllleeerre 96 
                 +++ +++++ + + ++f+++ + f+ l l  +   sp+e     +r+ l+ +r +
  KOO24475.1 141 QKKAALNQARDAINAKFSNMRKAFQDLDLDASGTLSPKELYHAFDRFNLQMDRGR 195
                 23566777777889999*********99999999999999988888888887766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (270 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1136  (0.063361); expected 358.6 (0.02)
Passed bias filter:                      468  (0.026103); expected 358.6 (0.02)
Passed Vit filter:                        58  (0.00323498); expected 17.9 (0.001)
Passed Fwd filter:                        15  (0.000836633); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              14  [number of targets reported over threshold]
# CPU time: 0.51u 0.25s 00:00:00.76 Elapsed: 00:00:00.41
# Mc/sec: 1989.17
//
Query:       KOO24476.1  [L=60]
Description: hypothetical protein Ctob_000402 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (60 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       334  (0.018629); expected 358.6 (0.02)
Passed bias filter:                      187  (0.01043); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.25s 00:00:00.57 Elapsed: 00:00:00.38
# Mc/sec: 468.72
//
Query:       KOO24477.1  [L=292]
Description: hypothetical protein Ctob_000403 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.7e-36  124.5   2.0    2.8e-36  123.8   2.0    1.4  1  DUF2870   Protein of unknown function (DUF2870)


Domain annotation for each model (and alignments):
>> DUF2870  Protein of unknown function (DUF2870)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  123.8   2.0   1.6e-40   2.8e-36       2      96 ..     192     286 ..     191     287 .. 0.97

  Alignments for each domain:
  == domain 1  score: 123.8 bits;  conditional E-value: 1.6e-40
     DUF2870   2 qlWwagkelqrgkklsdyvGkNektkiivklqkkgsgaParepvvseeeqkalmaaayrkqeelkkleeddddsylnsewadpkalkrqlqglen 96 
                 ++W  +kelqr+k ls+y+GkN+k+k++vklqkkg+gaParepvvse+eqka++a++++k +e++kl+ +d+d+y ns+wa+pk+lk++++g+ +
  KOO24477.1 192 SMWCFNKELQRDKLLSEYTGKNDKSKVVVKLQKKGAGAPAREPVVSEAEQKAMVAFYHKKEQEMQKLALEDEDAYQNSQWANPKGLKSAMTGVGE 286
                 79*****************************************************************************************9865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (292 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       753  (0.041999); expected 358.6 (0.02)
Passed bias filter:                      458  (0.0255452); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.23s 00:00:00.65 Elapsed: 00:00:00.37
# Mc/sec: 2349.46
//
Query:       KOO24478.1  [L=1675]
Description: hypothetical protein Ctob_000411 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.3e-46  155.8   0.0    5.3e-05   23.3   0.0   13.5 14  Pentapeptide_4   Pentapeptide repeats (9 copies)
      2e-06   27.8  49.5        1.8    8.4   0.0   19.5 22  Ribosomal_L13e   Ribosomal protein L13e
    0.00092   19.6  18.3      1e+02    3.5   0.0   13.6 16  Ntox33           Bacterial toxin 33
     0.0076   16.7   0.6         69    4.0   0.0    6.6  6  Acetyltransf_11  Udp N-acetylglucosamine O-acyltransferase; D
  ------ inclusion threshold ------
      0.059   13.5   0.2         31    4.7   0.0    4.5  5  Arteri_GP4       Arterivirus glycoprotein
        3.3    6.7  14.7         12    4.9  14.7    1.8  1  XK-related       XK-related protein


Domain annotation for each model (and alignments):
>> Pentapeptide_4  Pentapeptide repeats (9 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.3   0.0   2.4e-05     0.071       1      77 []     662     739 ..     662     747 .. 0.87
   2 !    6.7   0.0    0.0028       8.3       8      73 ..     739     804 ..     733     815 .. 0.71
   3 !   11.2   0.0    0.0001      0.31       7      74 ..     777     845 ..     771     848 .. 0.86
   4 !   10.0   0.0   0.00025      0.76       8      74 ..     818     895 ..     811     898 .. 0.74
   5 !    8.1   0.0   0.00096       2.9      19      58 ..     949     988 ..     911     997 .. 0.65
   6 !    8.3   0.0   0.00084       2.5       3      63 ..     953    1024 ..     952    1059 .. 0.61
   7 !    6.3   0.0    0.0037        11       3      60 ..    1064    1123 ..    1062    1129 .. 0.78
   8 !   11.0   0.0   0.00012      0.35      11      69 ..    1124    1181 ..    1116    1187 .. 0.85
   9 !   14.8   0.0   7.9e-06     0.024      13      75 ..    1175    1238 ..    1168    1240 .. 0.89
  10 !   12.0   0.0   5.9e-05      0.18       7      70 ..    1249    1318 ..    1244    1326 .. 0.92
  11 ?    4.6   0.0     0.012        37       2      69 ..    1356    1433 ..    1346    1442 .. 0.72
  12 !   12.1   0.0   5.7e-05      0.17       7      66 ..    1451    1510 ..    1445    1516 .. 0.89
  13 !   13.8   0.0   1.6e-05     0.048       2      74 ..    1516    1590 ..    1515    1593 .. 0.89
  14 !   23.3   0.0   1.8e-08   5.3e-05       2      73 ..    1597    1669 ..    1596    1673 .. 0.91

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 2.4e-05
  Pentapeptide_4   1 aeftrcsfnncklsnvnFsearlrdcnFtecrlsnvnFdecnlsdvdfaevdlkrasFsgcnlknvnfs.dklkdidF 77 
                     ae++ +++++++l    +++ +lr   F++++l+ +  + ++l+   f   +lk + F++ +lk   fs ++l++ +F
      KOO24478.1 662 AEMKAAKLKASQLMAGGYTAGELRKGGFSAAQLKLAGYTAADLRLGGFPARQLKAVGFTAEELKANGFSvTELREGTF 739
                     67899999*************************999999999999999999999999999999988887357877655 PP

  == domain 2  score: 6.7 bits;  conditional E-value: 0.0028
  Pentapeptide_4   8 fnncklsnvnFsearlrdcnFtecrlsnvnFdecnlsdvdfaevdlkrasFsgcnlknvnfsd.klk 73 
                     f +  l+ + ++  ++r + F+++ l++  Fd + l+   f+ +dlk a + +++ k + f++ +lk
      KOO24478.1 739 FTAKELHPLKYTPLEMRLAGFMAAELKEL-FDLTELKVGGFTATDLKAAGYYASEMKAAGFKAqELK 804
                     66667788888888888899999999765.7777777777777777777777777777777654554 PP

  == domain 3  score: 11.2 bits;  conditional E-value: 0.0001
  Pentapeptide_4   7 sfnncklsnvnFsearlrdcnFtecrlsnvnFdecnlsdvdfaevdlkrasFsgcnlknvnfsd.klkd 74 
                     +f +++l+ + +++++++++ F++  l+ +  d ++ ++v     ++k+a F +   +++  s+ +l d
      KOO24478.1 777 GFTATDLKAAGYYASEMKAAGFKAQELKVAGYDPTLMRSVGYKSSEMKEAGFNAKKVRGAGYSAlELLD 845
                     689999999999999999999999999999999999999999999999999999998888877666655 PP

  == domain 4  score: 10.0 bits;  conditional E-value: 0.00025
  Pentapeptide_4   8 fnncklsnvnFsearlrdcnFtecrl..........snvnFdecnlsdvdfaevdlkrasFsgcnlknvnfsd.klkd 74 
                     ++ +  +++ F++ + r++  ++  l          +n+  +  +l+d++ +  +lk++ F  ++l+ + fs+ +l d
      KOO24478.1 818 YKSSEMKEAGFNAKKVRGAGYSALELldagwtveicKNAGCSARDLRDANCTIRELKEVGFVLSDLRYAGFSAqELQD 895
                     555555555555555555555555555555555555***********************************9867887 PP

  == domain 5  score: 8.1 bits;  conditional E-value: 0.00096
  Pentapeptide_4  19 searlrdcnFtecrlsnvnFdecnlsdvdfaevdlkrasF 58 
                     s  +l+++ Ft + l++v F+   l +v f+  +lk+  +
      KOO24478.1 949 SVKELKGAGFTPSELHEVGFAAHELTSVGFTAKELKEGGY 988
                     3335566666666666666666666666666555555444 PP

  == domain 6  score: 8.3 bits;  conditional E-value: 0.00084
  Pentapeptide_4    3 ftrcsfnncklsnvnFsearlrdcnFtecrl........snvnFdec...nlsdvdfaevdlkrasFsgcnl 63  
                      ++ ++f  + l++v F++ +l +  Ft+  l        ++ + + c    l+d  fa  +lkr  F++ +l
      KOO24478.1  953 LKGAGFTPSELHEVGFAAHELTSVGFTAKELkeggyssaQELREAGCmvhELKDGGFAARELKRGGFTAHDL 1024
                      456677777777777777777777777777766666555333333331113344445555555555554444 PP

  == domain 7  score: 6.3 bits;  conditional E-value: 0.0037
  Pentapeptide_4    3 ftrcsfnncklsnvnFsearlrd..cnFtecrlsnvnFdecnlsdvdfaevdlkrasFsg 60  
                      +++++fn+ +l++v F++ +l +    F ++ ++ v F+  + +++ ++  +l +a++  
      KOO24478.1 1064 MRDAGFNAQQLKDVGFAAKDLYAegQGFAAIEMNGVGFTAKQMRTAGLNVEQLVEAQYPL 1123
                      577889999999999999877654488999999999999999999988877777777665 PP

  == domain 8  score: 11.0 bits;  conditional E-value: 0.00012
  Pentapeptide_4   11 cklsnvnFsearlrdcnFtecrlsnvnFdecnlsdvdfaevdlkrasFsgcnlknvnfs 69  
                      + l ++ +++++lr + Ft++ l +  F+ + l+   f ++dlk++ F+  +l ++ f 
      KOO24478.1 1124 AELIDAGYKANQLRPAGFTASELEEYGFTAAELKAGGFLPTDLKKI-FQSQELVQAGFT 1181
                      56778889999*********************************98.777777777774 PP

  == domain 9  score: 14.8 bits;  conditional E-value: 7.9e-06
  Pentapeptide_4   13 lsnvnFsearlrdcnFtecrlsnvnFdecnlsdvdfaevdlkrasFsgcnlknvnfsd.klkdi 75  
                      l ++ F+ +++rd   ++++l++v  +  +l++   ++++lk asFs+ +lk + f++ +lk++
      KOO24478.1 1175 LVQAGFTPSEMRDGGYSATDLKAVGCTAKDLKNGGYTGTELKAASFSADQLKVAGFKGkELKKA 1238
                      667889999999999999999***********************************98679875 PP

  == domain 10  score: 12.0 bits;  conditional E-value: 5.9e-05
  Pentapeptide_4    7 sfnncklsnvnFsearlrdcnFtecrl......snvnFdecnlsdvdfaevdlkrasFsgcnlknvnfsd 70  
                      +f +++l+++ +s+ + +d+ F+++        +++ F+   l+ + +    lk   Fs+ ++k + f++
      KOO24478.1 1249 GFSASQLKEAGYSAKDVEDAGFRAASVftlselKDAGFTGQELRLAGIGAHALKQGGFSAKEIKAAGFKA 1318
                      7999********************99999999999*********************************87 PP

  == domain 11  score: 4.6 bits;  conditional E-value: 0.012
  Pentapeptide_4    2 eftrcsfnncklsnvnFsea..rlrdcnFtecrl........snvnFdecnlsdvdfaevdlkrasFsgcnlknvnfs 69  
                      e++ ++fn+  l+ v F+++  rl +c+ +e +          +  F+   l+   f+++++k   ++ +++k+   s
      KOO24478.1 1356 ELRGAGFNAKELKLVRFTTVelRLGGCTAKELKQngfpvpelLEGGFSVVELKAGGFTPNEMKAGGYTLSQFKQGGVS 1433
                      667777888888888888883333357777777655555555555599999999999999999999999998876665 PP

  == domain 12  score: 12.1 bits;  conditional E-value: 5.7e-05
  Pentapeptide_4    7 sfnncklsnvnFsearlrdcnFtecrlsnvnFdecnlsdvdfaevdlkrasFsgcnlknv 66  
                      ++++++l+ v F+ +++r   Ft + l +v  + + l+ v f+++dlkr  +   +l+++
      KOO24478.1 1451 GYLAADLKPVGFTLSEMRTGGFTVSELRAVDYSATELKAVGFTMMDLKRGGLPPKELRDT 1510
                      567899999****************************************99888877765 PP

  == domain 13  score: 13.8 bits;  conditional E-value: 1.6e-05
  Pentapeptide_4    2 eftrcsfnncklsnvnFsearlrdcnFtecrl.snvnFdecnlsdvdfaevdlkrasFsgcnlknvnf.sdklkd 74  
                      e++ c+f+  +l +v Fs+a+l++c    c+    + F+   l++v  +  +lk   Fs+ +lk+v f    l++
      KOO24478.1 1516 EMRECGFKPKTLRDVGFSAAELKACPAYTCHDlRLAGFSVDELRKVGYSAYELKIGGFSAKELKGVDFgVQALRE 1590
                      5899***********************9998559999******************************93345665 PP

  == domain 14  score: 23.3 bits;  conditional E-value: 1.8e-08
  Pentapeptide_4    2 eftrcsfnncklsnvnFsearlrdcnFtecrlsnvnFdecnlsdvdfaevdlkrasFsgcnlknvnfsd.klk 73  
                      ++++++f ++ l+   +s+ +l +c+F +  l+++ F+  +l d+ ++  +lk+a F   +lk++   + klk
      KOO24478.1 1597 DLEDVGFTAAELKAGGYSALHLVNCSFPADELKHAGFTIKQLGDAGLSAKELKEAGFDLEELKSIGVPKwKLK 1669
                      6899******************************************************999998877433666 PP

>> Ribosomal_L13e  Ribosomal protein L13e
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.0       2.2   6.6e+03      67      80 ..     658     671 ..     655     676 .. 0.86
   2 ?    1.7   0.0     0.067     2e+02      66      80 ..     717     731 ..     709     736 .. 0.84
   3 ?   -1.5   0.0      0.64   1.9e+03      67      78 ..     777     788 ..     772     795 .. 0.85
   4 ?    2.6   0.0     0.035   1.1e+02      66      87 ..     796     817 ..     783     822 .. 0.86
   5 ?    1.8   0.0     0.063   1.9e+02      58      96 ..     828     867 ..     822     876 .. 0.81
   6 ?    0.8   0.1      0.13   3.7e+02      64      89 ..     914     939 ..     911     945 .. 0.86
   7 !    8.4   0.0   0.00062       1.8      54      87 ..     944     977 ..     939     983 .. 0.87
   8 ?   -0.6   0.0      0.35   1.1e+03      67      80 ..     977     990 ..     974     999 .. 0.86
   9 ?    0.9   0.1      0.12   3.5e+02      67      87 ..    1038    1058 ..    1035    1071 .. 0.68
  10 ?    3.8   0.1     0.016        47      64      91 ..    1087    1114 ..    1082    1117 .. 0.88
  11 ?   -0.7   0.1      0.36   1.1e+03      67      78 ..    1150    1161 ..    1146    1170 .. 0.87
  12 ?    0.2   0.0       0.2   5.9e+02      58      81 ..    1240    1263 ..    1234    1271 .. 0.80
  13 ?    3.5   0.1      0.02        59      65      88 ..    1273    1296 ..    1266    1303 .. 0.78
  14 !    4.7   0.3    0.0084        25      67      85 ..    1305    1323 ..    1298    1326 .. 0.89
  15 ?    0.8   0.1      0.12   3.7e+02      56      77 ..    1350    1371 ..    1330    1391 .. 0.79
  16 ?   -0.2   0.1      0.26   7.7e+02      67      82 ..    1401    1416 ..    1399    1442 .. 0.69
  17 ?   -1.0   0.0      0.47   1.4e+03      63      76 ..    1468    1480 ..    1460    1486 .. 0.61
  18 !    7.7   0.0     0.001         3      65      95 ..    1489    1519 ..    1474    1525 .. 0.87
  19 ?   -1.7   0.0      0.74   2.2e+03      67      80 ..    1552    1565 ..    1545    1576 .. 0.85
  20 ?   -1.3   0.0      0.57   1.7e+03      67      79 ..    1602    1614 ..    1600    1617 .. 0.87
  21 ?    2.9   0.0      0.03        90      67      88 ..    1642    1663 ..    1630    1667 .. 0.79
  22 ?    1.7   0.0     0.069   2.1e+02      66      88 ..    1651    1673 ..    1644    1675 .] 0.72

  Alignments for each domain:
  == domain 1  score: -3.2 bits;  conditional E-value: 2.2
  Ribosomal_L13e  67 GFtleElkaagisk 80 
                     G+t +E+kaa++++
      KOO24478.1 658 GYTGAEMKAAKLKA 671
                     99********9986 PP

  == domain 2  score: 1.7 bits;  conditional E-value: 0.067
  Ribosomal_L13e  66 rGFtleElkaagisk 80 
                      GFt eElka g+s 
      KOO24478.1 717 VGFTAEELKANGFSV 731
                     5*********99875 PP

  == domain 3  score: -1.5 bits;  conditional E-value: 0.64
  Ribosomal_L13e  67 GFtleElkaagi 78 
                     GFt ++lkaag 
      KOO24478.1 777 GFTATDLKAAGY 788
                     9*********96 PP

  == domain 4  score: 2.6 bits;  conditional E-value: 0.035
  Ribosomal_L13e  66 rGFtleElkaagiskklArtiG 87 
                      GF  +Elk ag ++ l r++G
      KOO24478.1 796 AGFKAQELKVAGYDPTLMRSVG 817
                     69*************9999998 PP

  == domain 5  score: 1.8 bits;  conditional E-value: 0.063
  Ribosomal_L13e  58 YntkvraGrGFtleElkaagiskklArtiGIav.DhRrkn 96 
                     +n k   G G++  El  ag + ++ ++ G +  D R  n
      KOO24478.1 828 FNAKKVRGAGYSALELLDAGWTVEICKNAGCSArDLRDAN 867
                     7999999****************99999997643666666 PP

  == domain 6  score: 0.8 bits;  conditional E-value: 0.13
  Ribosomal_L13e  64 aGrGFtleElkaagiskklArtiGIa 89 
                     +G G ++++lkaagis+   +  GIa
      KOO24478.1 914 TGAGASVADLKAAGISATGLKLEGIA 939
                     5999************9887777776 PP

  == domain 7  score: 8.4 bits;  conditional E-value: 0.00062
  Ribosomal_L13e  54 ptvrYntkvraGrGFtleElkaagiskklArtiG 87 
                     ++v Y +k   G GFt +El+++g+ ++   ++G
      KOO24478.1 944 KAVGYSVKELKGAGFTPSELHEVGFAAHELTSVG 977
                     567899999****************999888887 PP

  == domain 8  score: -0.6 bits;  conditional E-value: 0.35
  Ribosomal_L13e  67 GFtleElkaagisk 80 
                     GFt +Elk+ g s 
      KOO24478.1 977 GFTAKELKEGGYSS 990
                     9********99765 PP

  == domain 9  score: 0.9 bits;  conditional E-value: 0.12
  Ribosomal_L13e   67 GFtleElkaagiskklArtiG 87  
                      GF+  Elk ag+s    +t G
      KOO24478.1 1038 GFSAIELKGAGLSVGELKTAG 1058
                      777777777777665555544 PP

  == domain 10  score: 3.8 bits;  conditional E-value: 0.016
  Ribosomal_L13e   64 aGrGFtleElkaagiskklArtiGIavD 91  
                      +G+GF+  E+  +g+++k  rt G+ v 
      KOO24478.1 1087 EGQGFAAIEMNGVGFTAKQMRTAGLNVE 1114
                      6999999999999999999999999886 PP

  == domain 11  score: -0.7 bits;  conditional E-value: 0.36
  Ribosomal_L13e   67 GFtleElkaagi 78  
                      GFt +Elka g+
      KOO24478.1 1150 GFTAAELKAGGF 1161
                      9********997 PP

  == domain 12  score: 0.2 bits;  conditional E-value: 0.2
  Ribosomal_L13e   58 YntkvraGrGFtleElkaagiskk 81  
                      Yn++     GF+ + lk+ag s+k
      KOO24478.1 1240 YNSRQLGIAGFSASQLKEAGYSAK 1263
                      777776668***********9887 PP

  == domain 13  score: 3.5 bits;  conditional E-value: 0.02
  Ribosomal_L13e   65 GrGFtleElkaagiskklArtiGI 88  
                         Ftl+Elk ag++ +  r  GI
      KOO24478.1 1273 ASVFTLSELKDAGFTGQELRLAGI 1296
                      556999999999998888777777 PP

  == domain 14  score: 4.7 bits;  conditional E-value: 0.0084
  Ribosomal_L13e   67 GFtleElkaagiskklArt 85  
                      GF+ +E+kaag+++++A t
      KOO24478.1 1305 GFSAKEIKAAGFKASTAFT 1323
                      9*************99976 PP

  == domain 15  score: 0.8 bits;  conditional E-value: 0.12
  Ribosomal_L13e   56 vrYntkvraGrGFtleElkaag 77  
                      + Yn+    G GF  +Elk + 
      KOO24478.1 1350 IGYNVAELRGAGFNAKELKLVR 1371
                      5577777778888888888665 PP

  == domain 16  score: -0.2 bits;  conditional E-value: 0.26
  Ribosomal_L13e   67 GFtleElkaagiskkl 82  
                      GF++ Elka g++++ 
      KOO24478.1 1401 GFSVVELKAGGFTPNE 1416
                      6666666666665543 PP

  == domain 17  score: -1.0 bits;  conditional E-value: 0.47
  Ribosomal_L13e   63 raGrGFtleElkaa 76  
                      r+G GFt++El+a+
      KOO24478.1 1468 RTG-GFTVSELRAV 1480
                      333.6666666665 PP

  == domain 18  score: 7.7 bits;  conditional E-value: 0.001
  Ribosomal_L13e   65 GrGFtleElkaagiskklArtiGIavDhRrk 95  
                        GFt+ +lk  g+++k  r  G +vD+ r+
      KOO24478.1 1489 AVGFTMMDLKRGGLPPKELRDTGCSVDEMRE 1519
                      56*************************9875 PP

  == domain 19  score: -1.7 bits;  conditional E-value: 0.74
  Ribosomal_L13e   67 GFtleElkaagisk 80  
                      GF+++El+++g s+
      KOO24478.1 1552 GFSVDELRKVGYSA 1565
                      9*******999765 PP

  == domain 20  score: -1.3 bits;  conditional E-value: 0.57
  Ribosomal_L13e   67 GFtleElkaagis 79  
                      GFt +Elka g s
      KOO24478.1 1602 GFTAAELKAGGYS 1614
                      9********9865 PP

  == domain 21  score: 2.9 bits;  conditional E-value: 0.03
  Ribosomal_L13e   67 GFtleElkaagiskklArtiGI 88  
                      G + +Elk+ag++ +  ++iG+
      KOO24478.1 1642 GLSAKELKEAGFDLEELKSIGV 1663
                      7888888888888888888887 PP

  == domain 22  score: 1.7 bits;  conditional E-value: 0.069
  Ribosomal_L13e   66 rGFtleElkaagiskklArtiGI 88  
                       GF leElk  g++k   + +G+
      KOO24478.1 1651 AGFDLEELKSIGVPKWKLKELGL 1673
                      48888888888888776666665 PP

>> Ntox33  Bacterial toxin 33
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.3   0.0      0.35     1e+03      14      33 ..     712     731 ..     684     735 .. 0.84
   2 ?   -0.6   0.0      0.62   1.9e+03      16      20 ..     793     797 ..     768     818 .. 0.60
   3 ?   -1.1   0.0      0.94   2.8e+03      16      33 ..     823     840 ..     818     843 .. 0.84
   4 ?   -2.2   0.0       2.1   6.1e+03      14      24 ..     891     901 ..     868     912 .. 0.59
   5 ?   -1.7   0.0       1.4   4.2e+03      16      31 ..     943     958 ..     933     965 .. 0.79
   6 ?    1.0   0.0      0.21   6.3e+02      16      29 ..    1004    1017 ..     989    1028 .. 0.67
   7 ?   -1.9   0.0       1.6   4.8e+03      15      35 ..    1033    1053 ..    1031    1057 .. 0.84
   8 ?    3.5   0.0     0.035     1e+02      16      44 ..    1064    1090 ..    1060    1099 .. 0.79
   9 ?   -2.2   0.0         2   5.9e+03      14      35 ..    1203    1224 ..    1198    1231 .. 0.84
  10 ?    3.3   0.1     0.039   1.2e+02      14      35 ..    1233    1254 ..    1222    1257 .. 0.86
  11 ?   -1.9   0.0       1.6   4.8e+03      15      30 ..    1254    1269 ..    1251    1273 .. 0.80
  12 ?   -0.4   0.0      0.57   1.7e+03      14      33 ..    1299    1318 ..    1288    1325 .. 0.75
  13 ?    1.8   0.1      0.12   3.5e+02      14      25 ..    1345    1356 ..    1324    1371 .. 0.57
  14 ?   -1.6   0.0       1.3     4e+03      16      33 ..    1558    1575 ..    1550    1582 .. 0.67
  15 ?   -3.0   0.0       3.5   1.1e+04      16      31 ..    1598    1613 ..    1596    1616 .. 0.78
  16 ?    2.9   0.0     0.051   1.5e+02      14      31 ..    1646    1663 ..    1629    1668 .. 0.84

  Alignments for each domain:
  == domain 1  score: 0.3 bits;  conditional E-value: 0.35
      Ntox33  14 klLkkkGidahdlkgrgksi 33 
                 + Lk  G+ a +lk +g s+
  KOO24478.1 712 RQLKAVGFTAEELKANGFSV 731
                 56889999999999888765 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 0.62
      Ntox33  16 LkkkG 20 
                 +k +G
  KOO24478.1 793 MKAAG 797
                 34444 PP

  == domain 3  score: -1.1 bits;  conditional E-value: 0.94
      Ntox33  16 LkkkGidahdlkgrgksi 33 
                 +k++G++a+  +g g s+
  KOO24478.1 823 MKEAGFNAKKVRGAGYSA 840
                 799******999888765 PP

  == domain 4  score: -2.2 bits;  conditional E-value: 2.1
      Ntox33  14 klLkkkGidah 24 
                 + L++ G+ a 
  KOO24478.1 891 QELQDVGYGAE 901
                 33444455555 PP

  == domain 5  score: -1.7 bits;  conditional E-value: 1.4
      Ntox33  16 LkkkGidahdlkgrgk 31 
                 +k  G+ +++lkg g 
  KOO24478.1 943 MKAVGYSVKELKGAGF 958
                 6788999999999885 PP

  == domain 6  score: 1.0 bits;  conditional E-value: 0.21
      Ntox33   16 LkkkGidahdlkgr 29  
                  Lk+ G+ a++lk  
  KOO24478.1 1004 LKDGGFAARELKRG 1017
                  56666666666533 PP

  == domain 7  score: -1.9 bits;  conditional E-value: 1.6
      Ntox33   15 lLkkkGidahdlkgrgksisr 35  
                   L + G+ a +lkg g s++ 
  KOO24478.1 1033 TLMEGGFSAIELKGAGLSVGE 1053
                  67889********99988775 PP

  == domain 8  score: 3.5 bits;  conditional E-value: 0.035
      Ntox33   16 LkkkGidahdlkgrgksisrlDlykDkkG 44  
                  ++++G++a++lk  g ++ + Dly  ++G
  KOO24478.1 1064 MRDAGFNAQQLKDVGFAA-K-DLYAEGQG 1090
                  678999999999888765.6.89988887 PP

  == domain 9  score: -2.2 bits;  conditional E-value: 2
      Ntox33   14 klLkkkGidahdlkgrgksisr 35  
                  k Lk+ G+   +lk  + s+ +
  KOO24478.1 1203 KDLKNGGYTGTELKAASFSADQ 1224
                  6799999999999999988876 PP

  == domain 10  score: 3.3 bits;  conditional E-value: 0.039
      Ntox33   14 klLkkkGidahdlkgrgksisr 35  
                  k Lkk+G++ ++l   g s+s+
  KOO24478.1 1233 KELKKAGYNSRQLGIAGFSASQ 1254
                  679*********9998888887 PP

  == domain 11  score: -1.9 bits;  conditional E-value: 1.6
      Ntox33   15 lLkkkGidahdlkgrg 30  
                   Lk++G+ a+d    g
  KOO24478.1 1254 QLKEAGYSAKDVEDAG 1269
                  69********987665 PP

  == domain 12  score: -0.4 bits;  conditional E-value: 0.57
      Ntox33   14 klLkkkGidahdlkgrgksi 33  
                  + Lk+ G+ a++ k  g ++
  KOO24478.1 1299 HALKQGGFSAKEIKAAGFKA 1318
                  56888888888888777655 PP

  == domain 13  score: 1.8 bits;  conditional E-value: 0.12
      Ntox33   14 klLkkkGidahd 25  
                  k Lk  G+++ +
  KOO24478.1 1345 KELKAIGYNVAE 1356
                  334444444444 PP

  == domain 14  score: -1.6 bits;  conditional E-value: 1.3
      Ntox33   16 LkkkGidahdlkgrgksi 33  
                  L+k G+ a +lk  g s+
  KOO24478.1 1558 LRKVGYSAYELKIGGFSA 1575
                  677777777777555444 PP

  == domain 15  score: -3.0 bits;  conditional E-value: 3.5
      Ntox33   16 LkkkGidahdlkgrgk 31  
                  L++ G+ a +lk  g 
  KOO24478.1 1598 LEDVGFTAAELKAGGY 1613
                  8999********5444 PP

  == domain 16  score: 2.9 bits;  conditional E-value: 0.051
      Ntox33   14 klLkkkGidahdlkgrgk 31  
                  k Lk++G+d  +lk  g+
  KOO24478.1 1646 KELKEAGFDLEELKSIGV 1663
                  78999****999997776 PP

>> Acetyltransf_11  Udp N-acetylglucosamine O-acyltransferase; Domain 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.0       4.4   1.3e+04      20      33 ..     721     734 ..     711     748 .. 0.53
   2 ?   -0.6   0.0      0.64   1.9e+03      13      52 ..     943     982 ..     924    1003 .. 0.78
   3 ?    0.8   0.0      0.24   7.1e+02      21      50 ..    1062    1091 ..    1050    1119 .. 0.77
   4 ?   -3.5   0.0       5.1   1.5e+04      11      34 ..    1233    1256 ..    1231    1258 .. 0.80
   5 ?    4.0   0.0     0.023        69      10      35 ..    1288    1313 ..    1285    1317 .. 0.92
   6 ?    1.6   0.0      0.13   3.9e+02      12      37 ..    1346    1371 ..    1342    1389 .. 0.85

  Alignments for each domain:
  == domain 1  score: -3.3 bits;  conditional E-value: 4.4
                      HHHHHHTT--HHHH CS
  Acetyltransf_11  20 lvgLkRrgfseeei 33 
                       + Lk +gfs +e+
       KOO24478.1 721 AEELKANGFSVTEL 734
                      44444444444433 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 0.64
                      TEEEEE-HHHHHHTT--HHHHHHHHHHHHHHHSSSS-HHH CS
  Acetyltransf_11  13 arlrglNlvgLkRrgfseeeikalkkayrllyrsglslee 52 
                      ++++g  +  Lk +gf+++e++++  a + l + g++ +e
       KOO24478.1 943 MKAVGYSVKELKGAGFTPSELHEVGFAAHELTSVGFTAKE 982
                      5667777788999999999999988887777777766665 PP

  == domain 3  score: 0.8 bits;  conditional E-value: 0.24
                       HHHHHTT--HHHHHHHHHHHHHHHSSSS-H CS
  Acetyltransf_11   21 vgLkRrgfseeeikalkkayrllyrsglsl 50  
                         ++ +gf+++++k++  a + ly +g  +
       KOO24478.1 1062 RAMRDAGFNAQQLKDVGFAAKDLYAEGQGF 1091
                       568889999999999999999999888655 PP

  == domain 4  score: -3.5 bits;  conditional E-value: 5.1
                       TTTEEEEE-HHHHHHTT--HHHHH CS
  Acetyltransf_11   11 nparlrglNlvgLkRrgfseeeik 34  
                       ++ + +g N+  L  +gfs++++k
       KOO24478.1 1233 KELKKAGYNSRQLGIAGFSASQLK 1256
                       556778999999999999999887 PP

  == domain 5  score: 4.0 bits;  conditional E-value: 0.023
                       TTTTEEEEE-HHHHHHTT--HHHHHH CS
  Acetyltransf_11   10 gnparlrglNlvgLkRrgfseeeika 35  
                       g++ rl+g+    Lk  gfs++eika
       KOO24478.1 1288 GQELRLAGIGAHALKQGGFSAKEIKA 1313
                       7789********************97 PP

  == domain 6  score: 1.6 bits;  conditional E-value: 0.13
                       TTEEEEE-HHHHHHTT--HHHHHHHH CS
  Acetyltransf_11   12 parlrglNlvgLkRrgfseeeikalk 37  
                       + ++ g N+  L+ +gf+++e+k ++
       KOO24478.1 1346 ELKAIGYNVAELRGAGFNAKELKLVR 1371
                       47889****************99887 PP

>> Arteri_GP4  Arterivirus glycoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.4   0.0     0.051   1.5e+02     108     138 ..     232     262 ..     224     266 .. 0.87
   2 ?    4.7   0.0      0.01        31      99     124 ..     783     808 ..     779     834 .. 0.87
   3 ?   -2.8   0.0         2     6e+03     104     117 ..     818     831 ..     812     840 .. 0.78
   4 ?   -3.0   0.0       2.4     7e+03      99     119 ..    1271    1291 ..    1250    1299 .. 0.70
   5 ?   -1.8   0.0         1     3e+03      97     117 ..    1616    1636 ..    1609    1646 .. 0.85

  Alignments for each domain:
  == domain 1  score: 2.4 bits;  conditional E-value: 0.051
  Arteri_GP4 108 elsekGfkvvfgnvsGvvavcvnfteyvshv 138
                  l+   fk ++  +sG++a+ + f++ +s v
  KOO24478.1 232 FLKGSIFKGILRSISGIMAISIYFADIISDV 262
                 5677789*******************99988 PP

  == domain 2  score: 4.7 bits;  conditional E-value: 0.01
  Arteri_GP4  99 lsacliyaselsekGfkvvfgnvsGv 124
                 l a  +yase++  Gfk++   v+G 
  KOO24478.1 783 LKAAGYYASEMKAAGFKAQELKVAGY 808
                 567779*************9999986 PP

  == domain 3  score: -2.8 bits;  conditional E-value: 2
  Arteri_GP4 104 iyaselsekGfkvv 117
                 + +se++e Gf++ 
  KOO24478.1 818 YKSSEMKEAGFNAK 831
                 5689*******875 PP

  == domain 4  score: -3.0 bits;  conditional E-value: 2.4
  Arteri_GP4   99 lsacliyaselsekGfkvvfg 119 
                   +a ++  sel++ Gf  +  
  KOO24478.1 1271 RAASVFTLSELKDAGFTGQEL 1291
                  467778888888888876655 PP

  == domain 5  score: -1.8 bits;  conditional E-value: 1
  Arteri_GP4   97 lmlsacliyaselsekGfkvv 117 
                  l l  c + a el+  Gf + 
  KOO24478.1 1616 LHLVNCSFPADELKHAGFTIK 1636
                  67899*************865 PP

>> XK-related  XK-related protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.9  14.7    0.0039        12       4     225 ..     248     440 ..     245     446 .. 0.66

  Alignments for each domain:
  == domain 1  score: 4.9 bits;  conditional E-value: 0.0039
  XK-related   4 llslllyiadvvtdvvlaveYysngdyvwfgltllfvllpslvvqlfsllwykedrskkkskeelkswllvlllhllqlgvlwrylealylgiksrkkk 102
                 ++++ +y+ad+++dv + + +y++g+y+++    +++++  lvv  + ++ y +     +s       ++ +++  + +g+l+  + ++   +      
  KOO24478.1 248 IMAISIYFADIISDVSVLMLFYNSGSYIYASASFILLIAQFLVVY-VRVIPYLRATFGADS-----AITISFIWTGFPMGLLLLDFLMFLEPFGLL--- 337
                 68999***************************9995555555555.666666655555553.....345667778888888887766666555544... PP

  XK-related 103 eskeeeeereyyerkllkeeadlsmlrlleaflesaPqlvLqlyillqtgseevsvlqavsavlSlvslawalvsyqkslrlsrpdkkklsllavilqf 201
                          +++ r+ + ++++  ++   e ++es+Pq vLq  + +       + +qa +a+ S ++l   ++   ks          +++  v++  
  KOO24478.1 338 ----AVLPFPDWLRQFVPAYKATRIIA--EVLIESFPQCVLQGFVYVAVI----KHVQAGTATPSELALFEFVTLLPKS----------ITISVVAILK 416
                 ....23456788777775555554444..8899*********98888773....3356666666666555555544444..........4445555555 PP

  XK-related 202 lWrlltiasRvlalalfasvfklw 225
                  W  l+ a+R + l+++a +++lw
  KOO24478.1 417 TWIELVFAARQAGLTVVAKAVQLW 440
                 555555555555555555555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1675 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       848  (0.0472977); expected 358.6 (0.02)
Passed bias filter:                      613  (0.0341904); expected 358.6 (0.02)
Passed Vit filter:                        67  (0.00373696); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 1.17u 0.31s 00:00:01.48 Elapsed: 00:00:00.51
# Mc/sec: 9876.10
//
Query:       KOO24479.1  [L=741]
Description: protein phosphatase 4 regulatory subunit 1 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.8e-14   51.6  25.2       0.04   14.2   0.0   10.3 10  HEAT      HEAT repeat
      3e-12   46.8  19.3     0.0025   18.1   0.2    7.1  6  HEAT_2    HEAT repeats
  ------ inclusion threshold ------
       0.13   12.5   0.0       0.41   10.9   0.0    1.8  1  DUF2063   Putative DNA-binding domain


Domain annotation for each model (and alignments):
>> HEAT  HEAT repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.5   0.0    0.0019        12       3      30 ..      65      92 ..      63      93 .. 0.81
   2 ?    1.6   0.1     0.077   4.6e+02       2      28 ..     126     159 ..     125     162 .. 0.72
   3 !    5.1   0.1    0.0054        33       6      31 .]     176     202 ..     171     202 .. 0.79
   4 !   11.4   0.2   5.4e-05      0.32       1      29 [.     211     239 ..     211     241 .. 0.88
   5 !   14.2   0.0   6.7e-06      0.04       1      28 [.     250     277 ..     250     280 .. 0.92
   6 !    5.6   0.0    0.0039        23      11      27 ..     299     315 ..     294     319 .. 0.87
   7 ?   -2.6   0.0       1.7     1e+04      21      30 ..     372     381 ..     372     382 .. 0.86
   8 !   13.0   0.0   1.6e-05     0.096       1      28 [.     487     514 ..     487     516 .. 0.93
   9 ?   -0.7   0.1       0.4   2.4e+03       4      30 ..     556     582 ..     553     583 .. 0.76
  10 ?    3.6   0.3     0.016        98       1      22 [.     592     613 ..     592     616 .. 0.90

  Alignments for each domain:
  == domain 1  score: 6.5 bits;  conditional E-value: 0.0019
                HHHHHHH.T-SSHHHHHHHHHHHHHHHHC CS
        HEAT  3 Plllkll.sDpspeVReaAakaLgalaev 30
                P llk++  Dp+  VRe+ ++ ++ la+v
  KOO24479.1 65 P-LLKMIsIDPDVAVRETLVEQIVPLARV 92
                4.588866***********9999888876 PP

  == domain 2  score: 1.6 bits;  conditional E-value: 0.077
                 HHHHHHHHT-.......SSHHHHHHHHHHHHHHH CS
        HEAT   2 lPlllkllsD.......pspeVReaAakaLgala 28 
                 +Pll +lls+       +sp   eaAa+aL +la
  KOO24479.1 126 VPLLTSLLSSgsqdasgNSPGLSEAAAEALLELA 159
                 6777777776666677777777789999999887 PP

  == domain 3  score: 5.1 bits;  conditional E-value: 0.0054
                 HHHHT-.SSHHHHHHHHHHHHHHHHCS CS
        HEAT   6 lkllsD.pspeVReaAakaLgalaevl 31 
                 l l +D +  e R  A + Lg la+vl
  KOO24479.1 176 LCLAHDnEVEEHRVVATQLLGSLAPVL 202
                 45556758888*************985 PP

  == domain 4  score: 11.4 bits;  conditional E-value: 5.4e-05
                 HHHHHHHHHT-SSHHHHHHHHHHHHHHHH CS
        HEAT   1 llPlllkllsDpspeVReaAakaLgalae 29 
                 +lP l+ l  Dp+ +VR+aAa+ +ga++ 
  KOO24479.1 211 VLPELVCLADDPAFRVRKAAALRVGAVST 239
                 589999999*************9999875 PP

  == domain 5  score: 14.2 bits;  conditional E-value: 6.7e-06
                 HHHHHHHHHT-SSHHHHHHHHHHHHHHH CS
        HEAT   1 llPlllkllsDpspeVReaAakaLgala 28 
                 llP++  l +D+ + VR+a++++L++++
  KOO24479.1 250 LLPIFEVLARDEIWGVRKASVESLAEVS 277
                 89**********************9976 PP

  == domain 6  score: 5.6 bits;  conditional E-value: 0.0039
                 -SSHHHHHHHHHHHHHH CS
        HEAT  11 DpspeVReaAakaLgal 27 
                 D+s  VR +A++aLg +
  KOO24479.1 299 DSSRWVRISACQALGPF 315
                 78889*********976 PP

  == domain 7  score: -2.6 bits;  conditional E-value: 1.7
                 HHHHHHHHHC CS
        HEAT  21 akaLgalaev 30 
                 a+a+g+la++
  KOO24479.1 372 AEAFGTLASN 381
                 789****997 PP

  == domain 8  score: 13.0 bits;  conditional E-value: 1.6e-05
                 HHHHHHHHHT-SSHHHHHHHHHHHHHHH CS
        HEAT   1 llPlllkllsDpspeVReaAakaLgala 28 
                 llPl  +l++D+ +eVR++A+  +g+l+
  KOO24479.1 487 LLPLAFSLCTDSVAEVRQTAIGQVGKLL 514
                 79*******************9999987 PP

  == domain 9  score: -0.7 bits;  conditional E-value: 0.4
                 HHHHHHT-SSHHHHHHHHHHHHHHHHC CS
        HEAT   4 lllkllsDpspeVReaAakaLgalaev 30 
                 +++++ + ps + R+++++ ++ l+e+
  KOO24479.1 556 TIVSMARAPSCHKRANCVQICASLLEG 582
                 666777777777899****99999987 PP

  == domain 10  score: 3.6 bits;  conditional E-value: 0.016
                 HHHHHHHHHT-SSHHHHHHHHH CS
        HEAT   1 llPlllkllsDpspeVReaAak 22 
                 +lP+ll   +D  ++VR a a 
  KOO24479.1 592 VLPALLPIVTDRVANVRLALAT 613
                 69*****99*********9875 PP

>> HEAT_2  HEAT repeats
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.7   0.1     0.028   1.6e+02      61      85 ..      61      84 ..      37     101 .. 0.56
   2 ?    0.3   0.2      0.16   9.4e+02      31      58 ..     124     158 ..     113     196 .. 0.58
   3 !   18.1   0.2   4.3e-07    0.0025      16      88 .]     187     274 ..     174     274 .. 0.71
   4 !   16.8   0.0   1.1e-06    0.0068       5      57 ..     254     315 ..     250     339 .. 0.73
   5 !   12.4   0.2   2.6e-05      0.15       5      63 ..     452     518 ..     448     523 .. 0.77
   6 !   11.5   0.5   4.9e-05      0.29      10      82 ..     562     651 ..     554     656 .. 0.64

  Alignments for each domain:
  == domain 1  score: 2.7 bits;  conditional E-value: 0.028
      HEAT_2 61 pealpaLkellddddddvvReaAae 85
                ++ +p+Lk++  d+d++v Re  +e
  KOO24479.1 61 SRIVPLLKMISIDPDVAV-RETLVE 84
                344444444444444433.333333 PP

  == domain 2  score: 0.3 bits;  conditional E-value: 0.16
      HEAT_2  31 ealpaLvell....eded.....pavRraaaeaLgai 58 
                 e++p+L++ll    +  d     p   +aaaeaL ++
  KOO24479.1 124 ELVPLLTSLLssgsQ--DasgnsPGLSEAAAEALLEL 158
                 677788887743222..22233467888888888554 PP

  == domain 3  score: 18.1 bits;  conditional E-value: 4.3e-07
      HEAT_2  16 vrraairaLg........rignpealpaLvellededpavRraaaeaLgai....gdpe....alpaLkellddddddvvReaAaeaLa 88 
                  r  a + Lg        ++  + +lp Lv l++d+  +vR+aaa   ga+    g +      lp+  e l++d+ + vR a++e+La
  KOO24479.1 187 HRVVATQLLGslapvlgyDLCCQYVLPELVCLADDPAFRVRKAAALRVGAVstvvGPELtvgrLLPIF-EVLARDEIWGVRKASVESLA 274
                 4555555555444666577778899************************9943333222222244444.4667788999999****996 PP

  == domain 4  score: 16.8 bits;  conditional E-value: 1.1e-06
      HEAT_2   5 lqalendpdpevrraairaLg........rignpealpaLvellededpavRraaaeaLg.a 57 
                  ++l++d+ + vr+a +++L+        + ++ ++ ++++e+  d++++vR  a++aLg  
  KOO24479.1 254 FEVLARDEIWGVRKASVESLAevsavmplEVRTGQLEKLMHEFHVDSSRWVRISACQALGpF 315
                 46777888888888888888877777777777778888888888888888888888888843 PP

  == domain 5  score: 12.4 bits;  conditional E-value: 2.6e-05
      HEAT_2   5 lqalendpdpevrraairaLgrignp........ealpaLvellededpavRraaaeaLgaigdpea 63 
                  ++ ++  ++  r+  + +L+++g          ++lp+ ++l++d+ ++vR++a+   g++  p a
  KOO24479.1 452 GEVRAETDNWRFRQLLASQLAEFGAAydraatldTLLPLAFSLCTDSVAEVRQTAIGQVGKLLQPLA 518
                 555567889999*********777655655555566999999999999********99998766555 PP

  == domain 6  score: 11.5 bits;  conditional E-value: 4.9e-05
      HEAT_2  10 ndpdpevrraairaLg........rignpealpaLvellededpavRraaaeaL.g........aigdpealpaLkellddddddvvRea 82 
                 + p++  r++ ++  +         i  +++lpaL+++++d  ++vR a a+   g         + +p + + L++l  d+d dv R+a
  KOO24479.1 562 RAPSCHKRANCVQICAslleglppPISLEKVLPALLPIVTDRVANVRLALATLVrGrllaesspFVSHPMTQQMLAALREDTDRDVLRQA 651
                 556666677666666644443333344559*********************977433222222222467667777765555556777765 PP

>> DUF2063  Putative DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   6.9e-05      0.41      42      63 ..     354     375 ..     348     381 .. 0.91

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 6.9e-05
                 HHTTTGGGGS-HHHHHHHHHHH CS
     DUF2063  42 aaFpvlrallGeerfdalaray 63 
                  +Fp + +++G er++ la+a+
  KOO24479.1 354 YNFPGVAQAVGRERWADLAEAF 375
                 68******************99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (741 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       377  (0.0210274); expected 358.6 (0.02)
Passed bias filter:                      325  (0.0181271); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.61u 0.27s 00:00:00.88 Elapsed: 00:00:00.44
# Mc/sec: 5106.20
//
Query:       KOO24480.1  [L=393]
Description: class 3 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.4e-09   37.2   0.0    5.1e-09   36.1   0.0    1.5  1  Lipase_3       Lipase (class 3)
    1.2e-05   24.7   0.0      2e-05   24.0   0.0    1.3  1  Hydrolase_4    Serine aminopeptidase, S33
    1.9e-05   24.7   1.6    2.9e-05   24.0   1.6    1.3  1  WW             WW domain
    0.00031   21.4  13.6    0.00031   21.4  13.6    1.7  2  Abhydrolase_6  Alpha/beta hydrolase family
     0.0082   16.3   0.0      0.018   15.1   0.0    1.5  1  Thioesterase   Thioesterase domain
  ------ inclusion threshold ------
       0.18   11.5   0.1       0.31   10.7   0.1    1.3  1  PGAP1          PGAP1-like protein


Domain annotation for each model (and alignments):
>> Lipase_3  Lipase (class 3)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.1   0.0   1.7e-12   5.1e-09       2     136 ..     134     255 ..     133     260 .. 0.77

  Alignments for each domain:
  == domain 1  score: 36.1 bits;  conditional E-value: 1.7e-12
                 EEE----------------EEE-HHHH-GTT-EEEHHHHHHHHS-HHHHHHHHHHHHHHHTT..-EEEEEEEETHHHHHH.HHHHHHHHHTT-SS---E CS
    Lipase_3   2 vafRGtesakdwltdldfslteakellekeggkvhsgfleayeeslreqvlkelkrllekyp..eysivvtGHSLGgalA.lLaaldlvengenekkkv 97 
                 ++fRGt s  d+  dl + ++  ++     gg  h gfl+a++        ++l++ l+++   ++ ++v GHSLGgalA +L+ +dl         +v
  KOO24480.1 134 LVFRGTCSTHDLELDLLVAPEAGPK-----GGLFHGGFLRAVR------DDTTLHTALTENArgSVPLYVFGHSLGGALAmTLLHADLLPAAHV--GQV 219
                 79****************9999998.....9**********99......344555555554435799*************55889999988866..9** PP

                 EEEEES----B-HHHHHHHHT-TTEEEEEEEETT--GGG CS
    Lipase_3  98 tvvtfGqPrvgnkefaklvdsqlnkkvlrvvntnDivPr 136
                 t+v++G+P+v      +  +   + ++l  vn +D vPr
  KOO24480.1 220 TCVALGSPKVSCGPPPQPPR---PMRLLLLVNGQDAVPR 255
                 *********96544444444...3345666666666666 PP

>> Hydrolase_4  Serine aminopeptidase, S33
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.0   0.0   6.8e-09     2e-05      58     127 ..     169     245 ..     158     277 .. 0.72

  Alignments for each domain:
  == domain 1  score: 24.0 bits;  conditional E-value: 6.8e-09
  Hydrolase_4  58 yvdDlaafvekvk.eehpelplfllGhSmGGliallyl......lrypdkvaglilsaPalkikaklkappllklll 127
                   v+D  ++ +++  +  +  pl+++GhS+GG++a+++l      + +  +v+ + l +P ++  ++ ++p+ ++lll
   KOO24480.1 169 AVRDDTTLHTALTeNARGSVPLYVFGHSLGGALAMTLLhadllpAAHVGQVTCVALGSPKVSCGPPPQPPRPMRLLL 245
                  45555555555551556666*****************9887666666668999999999999888855666666644 PP

>> WW  WW domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.0   1.6   9.7e-09   2.9e-05       2      31 .]     364     391 ..     363     391 .. 0.97

  Alignments for each domain:
  == domain 1  score: 24.0 bits;  conditional E-value: 9.7e-09
                 -TTEEEEE-TTTT-EEEEETTT--EESS-- CS
          WW   2 PpGWeeqwdpdsGrvYYyNheTgetqWekP 31 
                 P+GW+ ++++d G  Y+yN++ get W++P
  KOO24480.1 364 PTGWQRAVSDD-GHAYFYNER-GETRWTRP 391
                 99*********.*******99.*******9 PP

>> Abhydrolase_6  Alpha/beta hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.3       0.6   1.8e+03     177     198 ..      88     106 ..      15     155 .. 0.45
   2 !   21.4  13.6     1e-07   0.00031      48     159 ..     168     328 ..     100     386 .. 0.48

  Alignments for each domain:
  == domain 1  score: -0.7 bits;  conditional E-value: 0.6
                    CTT-CHHHHCHHCCCHSTTEEE CS
  Abhydrolase_6 177 ggeDplvprllerllaqagarl 198
                    +++D+l ++   + l+ +garl
     KOO24480.1  88 ADSDALNREV--AELV-PGARL 106
                    1222222222..1122.22222 PP

  == domain 2  score: 21.4 bits;  conditional E-value: 1e-07
                    HHCHHHHHHHCCTT.....TTSEEEEEETCHHHHHHHHHHCC..........EEEEES-........----TTT...............S----TT CS
  Abhydrolase_6  48 edladlaalldelaa...gggpvvlvGHSlGGalalaaapla........lvvgvlldp......pptalpagl...............laaalel 111
                    ++++d+  l ++l +   g  p +++GHSlGGala+ ++++         +v +v+l +      pp+++p ++               l  ++++
     KOO24480.1 168 RAVRDDTTLHTALTEnarGSVPLYVFGHSLGGALAMTLLHADllpaahvgQVTCVALGSpkvscgPPPQPPRPMrllllvngqdavprlLGSPMPV 263
                    33566655555555564466666**************77777888866666666666665777763333333333355556544444444444444 PP

                    HHHHHHTT-C...CCCHCCH...S-HSCCCCHHH.......C.....CCCHCHCCCGHHHHCCHHC CS
  Abhydrolase_6 112 llallallrl...lawlsre...plprlfladed.......a.....daawrarlarlaallaglg 159
                    l+a++++l++    +++s++   +l+ +f ++e+              +a ra   ++++l++gl 
     KOO24480.1 264 LQAATQALIArgsTGLPSKAlleLLA-QFAHPESleilfltGrrakrVPADRASREAVLHLTDGLA 328
                    44444433333333333222332233.444444433222221222222222222222222222222 PP

>> Thioesterase  Thioesterase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.0   6.1e-06     0.018      66      82 ..     186     204 ..     175     211 .. 0.82

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 6.1e-06
                   S..SEEEEEETHHHHHHHH CS
  Thioesterase  66 g..PyalfGhSlGgllAfe 82 
                   g  P+++fGhSlGg+lA+ 
    KOO24480.1 186 GsvPLYVFGHSLGGALAMT 204
                   334**************96 PP

>> PGAP1  PGAP1-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.1    0.0001      0.31      93     129 ..     190     228 ..     173     234 .. 0.77

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.0001
       PGAP1  93 viliGHSmGGivaraaltlknyikqsvntiltla..sPh 129
                 + + GHS+GG +a ++l  + + + +v ++ ++a  sP 
  KOO24480.1 190 LYVFGHSLGGALAMTLLHADLLPAAHVGQVTCVAlgSPK 228
                 5799*********99999999888999876554333886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (393 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       351  (0.0195772); expected 358.6 (0.02)
Passed bias filter:                      286  (0.0159518); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.51u 0.25s 00:00:00.76 Elapsed: 00:00:00.43
# Mc/sec: 2766.55
//
Query:       KOO24481.1  [L=304]
Description: calcium calmodulin-dependent protein kinase i [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.5e-52  177.8   0.0      3e-52  177.6   0.0    1.1  1  Pkinase         Protein kinase domain
    1.1e-19   70.8   0.0    1.7e-19   70.1   0.0    1.2  1  Pkinase_Tyr     Protein tyrosine kinase
    0.00045   19.6   0.0    0.00069   19.0   0.0    1.2  1  Kdo             Lipopolysaccharide kinase (Kdo/WaaP) family
    0.00051   19.5   0.0     0.0043   16.4   0.0    1.9  1  Kinase-like     Kinase-like
     0.0012   17.7   0.0     0.0018   17.1   0.0    1.1  1  Pkinase_fungal  Fungal protein kinase
     0.0023   17.6   0.0      0.013   15.2   0.0    1.9  2  FTA2            Kinetochore Sim4 complex subunit FTA2
     0.0047   16.9   0.8      0.018   15.0   0.0    2.1  3  APH             Phosphotransferase enzyme family
  ------ inclusion threshold ------
      0.051   13.2   0.0       0.16   11.5   0.0    1.7  2  RIO1            RIO1 family
       0.22   11.1   0.0       0.31   10.5   0.0    1.2  1  YrbL-PhoP_reg   PhoP regulatory network protein YrbL


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  177.6   0.0   1.5e-55     3e-52      13     264 .]       3     258 ..       1     258 [. 0.92

  Alignments for each domain:
  == domain 1  score: 177.6 bits;  conditional E-value: 1.5e-55
                 EEEEEEEETTTTEEEEEEEEECHCHCHHHHHHHHHHHHHHHHHS.CTTB--EEEEEEESSEEEEEEE--TTEBHHHHHHHHSS--HHHHHHHHHHHHHH CS
     Pkinase  13 GkVykaveketgkivAvKkikkekakkkkekkvlrEikilkklk.hpnivrlyevfeekdelylvleyveggeladllerkgslseeeakkiakqileg 110
                 ++Vy++v  ++gk++A+K +k +   +++ + ++ E++il+ +  hp iv+++e+++++  +yl +e+v gg+l + +e++g+++e++a ++++q+  +
  KOO24481.1   3 ASVYEGVCLADGKTYALKAFKLDGGLQQSCEGLRDEVTILRAVPdHPGIVQMKEIISTPGCVYLAMELVAGGDLLSPIEERGAYNEQKAMRLFAQMTDA 101
                 79*****************************************99****************************************************** PP

                 HHHHHHTTEE-SS-SGGGEEEE.TTTE.EEE-SGTTSEESSSSCSBCTTTSCGGGS-HHHH..........TTSCBSHHHHHHHHHHHHHHHHHSS-ST CS
     Pkinase 111 leylHskgiiHrDlKpeNiLid.ekge.lKitDFGlakelessskltsfvgtseYlAPEvl..........keneyskkvDvWslGvilyelltgkppf 197
                 ++ lH++gi+HrDlKpeN+ +  ++++ lKi+D G a  l++   l + +gt+ Y APEv              +y++ vD+Ws+Gv ly +l+g  pf
  KOO24481.1 102 ISELHKAGIVHRDLKPENVCFTdKSRNrLKIIDMGAAGFLTEAG-LGDLCGTPLYAAPEVTpwffadprgpPPPRYDERVDLWSMGVALYVMLSGAAPF 199
                 *******************888433336**************99.*******************99886555589************************ PP

                 TTSSHHHHHHHHHHTHHHHHHHCT.SHH...HHHTTS-HHHHHHHHHHT-SSGCCSTTHHHHHTSGGG CS
     Pkinase 198 sgekgkekvekeldqlekilkilg.etkeklpeaseiseeakdllkkllkkdpkkRltaeellqhpyl 264
                     +++ ve+ +++      i +    +++p +++is+ ak++++kll+ dp+ R+ ++el +hp++
  KOO24481.1 200 D---QEQPVEMLMRE------ICRgRLGMSSPDWKHISSPAKSVVSKLLATDPNLRMPMAELREHPWI 258
                 *...44444444444......33337889**************************************7 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.1   0.0   8.6e-23   1.7e-19      15     257 ..       5     254 ..       2     255 .. 0.81

  Alignments for each domain:
  == domain 1  score: 70.1 bits;  conditional E-value: 8.6e-23
                  EEEEEEETTTTSSEEEEEEEEES.TTSSHHHHHHHHHHHHHHHTS.-BTTB--EEEEEESSSSEEEEEE--TTEBHHHHHHHTCTTTSBHHHHHHHHH CS
  Pkinase_Tyr  15 VvegtlkgekekkevkVavKtlk.eeateeekeelleeakimkkl.khpnivkllgvctkeepllivteyvkgGdLlkfLrkkekekltlkdllsfal 110
                  V+eg +      +  + a+K +k ++  +++ e l +e++i++++ +hp iv++  +++  + +++ +e+v+gGdLl+ ++++   + + ++ +++ +
   KOO24481.1   5 VYEGVCL----ADGKTYALKAFKlDGGLQQSCEGLRDEVTILRAVpDHPGIVQMKEIISTPGCVYLAMELVAGGDLLSPIEER--GAYNEQKAMRLFA 96 
                  5666665....45566788888723445555888999********************************************98..99*********** PP

                  HHHHHHHHHHHTTEEEST-SGGGEEEEE..TTEEEE-STTTHEETTTSSEEEETTSSTSGGGGS-HHHHHHSE..........EEHHHHHHHHHHHHH CS
  Pkinase_Tyr 111 qvAkGmeyLeskklvHrdlaarNvLlse..nkvvkisDfGLardiekddeyvkkeeaklpvkWmapEslkekk..........ftsksDvWsfGvllw 196
                  q+ ++++ L++  +vHrdl   Nv  ++  ++  ki D G a  +    e    + +     + apE+               + ++ D Ws Gv l+
   KOO24481.1  97 QMTDAISELHKAGIVHRDLKPENVCFTDksRNRLKIIDMGAAGFL---TEAGLGDLC-GTPLYAAPEVTPWFFadprgpppprYDERVDLWSMGVALY 190
                  ************************998744679**********99...333333333.3445889998654444456899999*************** PP

                  HHHTTSSGTTTTS.HHHHHHHHHHTTEE.S-BB..TTSBHHHHHHHHHHT-SSGGGS--HHHHHH CS
  Pkinase_Tyr 197 Eiftlgespypgl.kneevleklkegkr.lekp..ekcpeelyelmkkcweedpeeRptfselve 257
                   +++ g+ p+ +    e +++ + +g+  ++ p  +++++  +++++k +++dp+ R  ++el+e
   KOO24481.1 191 VMLS-GAAPFDQEqPVEMLMREICRGRLgMSSPdwKHISSPAKSVVSKLLATDPNLRMPMAELRE 254
                  9999.999999883555567777655433666622688999999*************99999976 PP

>> Kdo  Lipopolysaccharide kinase (Kdo/WaaP) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.0   0.0   3.5e-07   0.00069     114     166 ..      85     135 ..      66     140 .. 0.85

  Alignments for each domain:
  == domain 1  score: 19.0 bits;  conditional E-value: 3.5e-07
         Kdo 114 elaeelkrallkavgrliaklhragvnHadlyaknillqqeeeeeaeiwliDl 166
                  ++e++  +l+ +   +i++lh+ag+ H+dl + n+ +  +     ++ +iD+
  KOO24481.1  85 AYNEQKAMRLFAQMTDAISELHKAGIVHRDLKPENVCFTDKS--RNRLKIIDM 135
                 488888999999************************999998..889999997 PP

>> Kinase-like  Kinase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   0.0   2.1e-06    0.0043     150     255 ..      95     204 ..      68     215 .. 0.72

  Alignments for each domain:
  == domain 1  score: 16.4 bits;  conditional E-value: 2.1e-06
  Kinase-like 150 TlqlirlaanLqakglvhgkftvdnllldekg..glmlggfta...Lvragtkvvlseve..kgfaPpEllgsrgg.ytrknktkmthkldaWqlGlv 239
                   +q+   + +L++ g+vh +++++n+++  k   +l++ +++a   L  ag        +    +a pE++       +     ++   +d W +G++
   KOO24481.1  95 FAQMTDAISELHKAGIVHRDLKPENVCFTDKSrnRLKIIDMGAagfLTEAGL----GDLCgtPLYAAPEVTPWFFAdPRGPPPPRYDERVDLWSMGVA 188
                  368888899*******************876511677777776222333333....333423458888887653333233478899************ PP

  Kinase-like 240 iyriwclklPltlate 255
                   y + +  +P+++ ++
   KOO24481.1 189 LYVMLSGAAPFDQEQP 204
                  ***********99876 PP

>> Pkinase_fungal  Fungal protein kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   0.0     9e-07    0.0018     303     380 ..      89     155 ..      77     162 .. 0.71

  Alignments for each domain:
  == domain 1  score: 17.1 bits;  conditional E-value: 9e-07
  Pkinase_fungal 303 espkellealrDaIkghrsLflkagiLHrDiSenNilitdskkegerkglLiDLDlakelsddssesgarertGTleF 380
                     ++  +l++ + Da     +L+ kagi+HrD   +N+ +td+   ++++  +iD+  a  l +    +g ++  GT+ +
      KOO24481.1  89 QKAMRLFAQMTDA---ISELH-KAGIVHRDLKPENVCFTDK---SRNRLKIIDMGAAGFLTE----AGLGDLCGTPLY 155
                     3344455555555...579**.*****************66...456778899888877773....555666666655 PP

>> FTA2  Kinetochore Sim4 complex subunit FTA2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.5   0.0      0.38   7.7e+02      44      54 ..      13      23 ..      10      34 .. 0.88
   2 !   15.2   0.0   6.3e-06     0.013     170     204 ..      87     121 ..      75     125 .. 0.91

  Alignments for each domain:
  == domain 1  score: -0.5 bits;  conditional E-value: 0.38
        FTA2 44 rgkeYALKlFr 54
                +gk+YALK F+
  KOO24481.1 13 DGKTYALKAFK 23
                689*****997 PP

  == domain 2  score: 15.2 bits;  conditional E-value: 6.3e-06
        FTA2 170 qeelevsqlpkllrdlkklhklgIvvrDlkeenyi 204
                 +e++ ++ + ++ + + +lhk+gIv+rDlk+en++
  KOO24481.1  87 NEQKAMRLFAQMTDAISELHKAGIVHRDLKPENVC 121
                 67889999***********************9975 PP

>> APH  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.2   0.0      0.07   1.4e+02      21     108 ..      15     108 ..      10     109 .. 0.74
   2 !   15.0   0.0   9.1e-06     0.018     155     196 ..      97     138 ..      75     140 .. 0.69
   3 ?   -2.3   0.3       1.7   3.4e+03     132     154 ..     265     286 ..     233     295 .. 0.44

  Alignments for each domain:
  == domain 1  score: 2.2 bits;  conditional E-value: 0.07
                 --EEEEEE-TT.S-HHHHHHHHHHHHHHHHTT-B--B-CTTBS-EEETTEEEEEEE----EE-SS......HHHHHHHHHHHHHHHHHHCCHHCH CS
         APH  21 gryvlrrnppa.raaeeirrevallrlLakagvpvPevlagdtddeeigllfalieyvpgrsllr......klsaaqlpellealgeflaalhqv 108
                 ++y+l+ +     +++++++  ++ + L++ +   P ++ +++     g +++++e v g +ll       + +++ + +l++++ +++ +lh +
  KOO24481.1  15 KTYALKAFKLDgGLQQSCEGLRDEVTILRAVPD-HPGIVQMKEIISTPGCVYLAMELVAGGDLLSpieergAYNEQKAMRLFAQMTDAISELHKA 108
                 467777766666777777766666666666644.5666666655556677999********9999999998778888889999999999999976 PP

  == domain 2  score: 15.0 bits;  conditional E-value: 9.1e-06
                 HHHHH--S...SS-EEEE-SS-SGGGEEEC...TTEEEEE---TT- CS
         APH 155 alaallpg...elptvllHgDlhpgNllvd.pddgrvtGviDfeda 196
                 ++ +   +     +++++H+Dl+p N+ ++ +  +r+  +iD + a
  KOO24481.1  97 QMTD---AiseLHKAGIVHRDLKPENVCFTdKSRNRL-KIIDMGAA 138
                 3333...23337789***************8666666.68887655 PP

  == domain 3  score: -2.3 bits;  conditional E-value: 1.7
                 HHHCCCGCCTCCHHHHHHHHHHH CS
         APH 132 atarllaselldlleeleeqvla 154
                  ++ +  ++ ++ ++++e++v+a
  KOO24481.1 265 LANERESLAAKQ-AAAAEAAVAA 286
                 222222222222.3333333333 PP

>> RIO1  RIO1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.0      0.94   1.9e+03       2      20 ..       5      24 ..       4      26 .. 0.87
   2 ?   11.5   0.0   8.2e-05      0.16      83     150 ..      66     136 ..      55     139 .. 0.79

  Alignments for each domain:
  == domain 1  score: -1.7 bits;  conditional E-value: 0.94
                EEEEEE.TTTEEEEEEEE-S CS
        RIO1  2 Vyhavs.edgkevaiKiykt 20
                Vy++v+  dgk +a+K +k+
  KOO24481.1  5 VYEGVClADGKTYALKAFKL 24
                89999889999*****9996 PP

  == domain 2  score: 11.5 bits;  conditional E-value: 8.2e-05
                 EEEE--EETTEEGGBHHHCG.-.HHHHHHHHHHHHHHHHHHHHTSTEEESS-STTSEEEETT...EEEE--GT CS
        RIO1  83 lvmefigedgvaapklkdve.e.eeeaeelyeevleemrklykeaglvHaDLSeyNvlvded...kvviIDvs 150
                 l me++   g  +  +++     e++a +l++++ +++  l  +ag+vH DL   Nv ++++   ++ iID++
  KOO24481.1  66 LAMELVA-GGDLLSPIEERGaYnEQKAMRLFAQMTDAISELH-KAGIVHRDLKPENVCFTDKsrnRLKIIDMG 136
                 6799998.5666666776664248899999999999766665.**************9987544478899986 PP

>> YrbL-PhoP_reg  PhoP regulatory network protein YrbL
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.0   0.00016      0.31     122     166 ..      92     134 ..      64     144 .. 0.83

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00016
  YrbL-PhoP_reg 122 aelkeaLdefleelldnhivtndlsakNivvkknsegeeelvlvD 166
                      l  ++ + + el  + iv +dl+++N+  +++s ++  l ++D
     KOO24481.1  92 MRLFAQMTDAISELHKAGIVHRDLKPENVCFTDKSRNR--LKIID 134
                    3677889999999*******************999888..88888 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (304 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       541  (0.0301746); expected 358.6 (0.02)
Passed bias filter:                      427  (0.0238162); expected 358.6 (0.02)
Passed Vit filter:                        51  (0.00284455); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.46u 0.25s 00:00:00.71 Elapsed: 00:00:00.40
# Mc/sec: 2259.18
//
Query:       KOO24482.1  [L=3019]
Description: flagellar associated protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    3.7e-38  129.7   0.5     0.0044   17.2   0.0   16.3 17  ASH           Abnormal spindle-like microcephaly-assoc'd, ASP
    6.9e-10   39.0   1.0      0.016   15.3   0.1    6.9  8  PapD-like     Flagellar-associated PapD-like
    2.6e-08   34.0   4.4      0.074   13.3   0.0    7.6 10  TMEM131_like  Transmembrane protein 131-like


Domain annotation for each model (and alignments):
>> ASH  Abnormal spindle-like microcephaly-assoc'd, ASPM-SPD-2-Hydin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.1      0.39   2.3e+03      15      65 ..      20      69 ..      11      78 .. 0.80
   2 !   15.9   0.0   1.9e-06     0.011      13      83 ..     122     192 ..     115     200 .. 0.91
   3 ?   -0.0   0.0      0.17     1e+03      18      51 ..     240     273 ..     231     317 .. 0.64
   4 !   17.2   0.0   7.3e-07    0.0044      12      89 ..     368     441 ..     361     446 .. 0.87
   5 ?   -1.7   0.0      0.59   3.5e+03      12      43 ..     693     724 ..     689     767 .. 0.87
   6 ?    3.8   0.0     0.011        65      25      96 ..     805     880 ..     786     882 .. 0.69
   7 !   11.1   0.4     6e-05      0.36      12      72 ..     898     955 ..     889     957 .. 0.88
   8 ?    0.0   0.0      0.17     1e+03      13      36 ..    1003    1026 ..     997    1040 .. 0.87
   9 ?    0.2   0.0      0.15   8.9e+02      60      79 ..    1130    1149 ..    1106    1153 .. 0.83
  10 !   16.4   0.0   1.3e-06    0.0077      13      79 ..    1188    1258 ..    1182    1272 .. 0.84
  11 !    5.5   0.0    0.0032        19      12      92 ..    1295    1378 ..    1285    1384 .. 0.75
  12 ?    0.2   0.0      0.14   8.5e+02      27      70 ..    1859    1904 ..    1853    1908 .. 0.89
  13 !   11.3   0.0     5e-05       0.3      49      96 ..    2042    2089 ..    2027    2091 .. 0.87
  14 !    6.2   0.0     0.002        12      20      80 ..    2565    2633 ..    2562    2648 .. 0.79
  15 ?   -0.2   0.0      0.19   1.2e+03      19      43 ..    2671    2695 ..    2668    2759 .. 0.67
  16 !    4.2   0.0    0.0085        51      65      94 ..    2838    2867 ..    2819    2870 .. 0.83
  17 !    7.4   0.0   0.00081       4.9      15      91 ..    2886    2965 ..    2874    2968 .. 0.81

  Alignments for each domain:
  == domain 1  score: -1.1 bits;  conditional E-value: 0.39
                EE-----EEEEEEE-EEESS-SS--EEEEEEEE--XXXXXXXXXX.XXXXXX CS
         ASH 15 sFgdvkvGssaerlLtveNpseepaevkvskvpaaekgfsveete.levqpg 65
                +F++v+     + ++ v+N s   ++v    +p+++++f++  ++ +e++pg
  KOO24482.1 20 NFESVAPSVRYTMKVSVKNVSMRGQRVR--LIPPKNREFTLVVQNdVELAPG 69
                7888888888999999999999887665..5788899999888888888887 PP

  == domain 2  score: 15.9 bits;  conditional E-value: 1.9e-06
                 EEEE-----EEEEEEE-EEESS-SS--EEEEEEEE--XXXXXXXXXX.XXXXXXXXXXXXXXXXXXXXXXXX CS
         ASH  13 fvsFgdvkvGssaerlLtveNpseepaevkvskvpaaekgfsveete.levqpgesvtltvtwtPteegavr 83 
                  ++Fg v ++s  +r+L+v+N +  + ++ +++++  +  +s+++    +++pg+s+t t++++ te g+  
  KOO24482.1 122 GIDFGVVLLNSVPTRKLVVTNQGTRDGKIMLGPLA-LSEMYSIKPPIeATIKPGDSHTYTIELNATEVGKQE 192
                 689********************************.888899988877****************99998765 PP

  == domain 3  score: -0.0 bits;  conditional E-value: 0.17
                 ----EEEEEEE-EEESS-SS--EEEEEEEE--XX CS
         ASH  18 dvkvGssaerlLtveNpseepaevkvskvpaaek 51 
                 +   G +++r+  + N +++p++ +vsk++++e 
  KOO24482.1 240 RLYCGLKTTRKAFILNHGPKPINFAVSKTSGDES 273
                 5566666777777777777777777777766554 PP

  == domain 4  score: 17.2 bits;  conditional E-value: 7.3e-07
                 EEEEE-----EEEEEEE-EEESS-SS--EEEEEEEE--XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
         ASH  12 pfvsFgdvkvGssaerlLtveNpseepaevkvskvpaaekgfsveetelevqpgesvtltvtwtPteegavrevLqfl 89 
                    +Fg+      +e++Lt++N +e p +   +    +  +f  +++e +v+p ++++++++++P + g+    Lq+l
  KOO24482.1 368 GAFTFGSCDMYDHREAFLTLTNKQELPYNFSFT----TPAHFAAKPLEGTVPPMGEMQVCLSFAPHQLGKLVGALQLL 441
                 56689999999**************99655544....4569****************************999999886 PP

  == domain 5  score: -1.7 bits;  conditional E-value: 0.59
                 EEEEE-----EEEEEEE-EEESS-SS--EEEE CS
         ASH  12 pfvsFgdvkvGssaerlLtveNpseepaevkv 43 
                  +v+Fg++ v +   r+ tv N    ++ v++
  KOO24482.1 693 KTVDFGNISVYTQVARNFTVLNELRVNILVAI 724
                 689**************999998777666665 PP

  == domain 6  score: 3.8 bits;  conditional E-value: 0.011
                 EEEE-EEESS-SS--EEEEE...EEE--XXXXXXXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
         ASH  25 aerlLtveNpseepaevkvs...kvpaaekgfsveete.levqpgesvtltvtwtPteegavrevLqflvndvlkh 96 
                  ++++ ++N + +pa+   +    +p+  +   v+++   e++p++++ +++ +tP    a   vL+ +v++  ++
  KOO24482.1 805 MSASVAITNHGTYPARFRWEnpeSMPPGRRPAFVPASLtGEIPPEKTLPVEIIFTPYLGCAAEHVLTAIVEGGSSK 880
                 566666666666666554431113444444444444446***************************9999987765 PP

  == domain 7  score: 11.1 bits;  conditional E-value: 6e-05
                 EEEEE-----EEEEEEE-EEESS-SS--EEEEEEEE--XXXXXXXXXXXXXXXXXXXXXXX CS
         ASH  12 pfvsFgdvkvGssaerlLtveNpseepaevkvskvpaaekgfsveetelevqpgesvtltv 72 
                  +v+Fg v+ G  +e++  ++N ++   +++v ++ ++  gfs++++   v  g+++ ++v
  KOO24482.1 898 KRVEFGVVPAGIVKEKNFLIKNQGQ---TTAVFTFDNPPPGFSIKPQAGAVRVGQTMEVSV 955
                 689********************99...557777777889************999999988 PP

  == domain 8  score: 0.0 bits;  conditional E-value: 0.17
                  EEEE-----EEEEEEE-EEESS-S CS
         ASH   13 fvsFgdvkvGssaerlLtveNpse 36  
                   ++Fg+v  G ++   Lt++N s 
  KOO24482.1 1003 ELNFGRVVAGATKWHPLTLKNASI 1026
                  689******************875 PP

  == domain 9  score: 0.2 bits;  conditional E-value: 0.15
                  XXXXXXXXXXXXXXXXXXXX CS
         ASH   60 levqpgesvtltvtwtPtee 79  
                  ++vqp++++ l++ +tP+++
  KOO24482.1 1130 ITVQPQTTLALKLGYTPKAA 1149
                  89***************986 PP

  == domain 10  score: 16.4 bits;  conditional E-value: 1.3e-06
                  EEEE-----EEEE...EEE-EEESS-SS-.-EEEEEEEE--XXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
         ASH   13 fvsFgdvkvGssa...erlLtveNpseep.aevkvskvpaaekgfsveetelevqpgesvtltvtwtPtee 79  
                   ++Fgd  +   +   ++++t++N++++p   +  + v+++e gfs++  + ++q ges+t+t+ ++ t  
  KOO24482.1 1188 AIKFGDCILRAAQfpyTKEITITNTDDKPvEWMLDENVIPDESGFSLDCPSGTLQVGESFTITFGFAATTV 1258
                  5777777777765444899**********77788899**************************99987665 PP

  == domain 11  score: 5.5 bits;  conditional E-value: 0.0032
                  EEEEE-----EEEEEEE-EEESS-SS--EEEEE.EEE--XXXXXXXXXX..XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
         ASH   12 pfvsFgdvkvGssaerlLtveNpseepaevkvs.kvpaaekgfsveete..levqpgesvtltvtwtPteegavrevLqflvnd 92  
                  p + + +v++G +a+++L + N + ++++v ++ ++ ++   +++e  e  l+   +++v +tv+++  + ++ ++ + +++ d
  KOO24482.1 1295 PELILPTVPLGHTAKASLYLINEGYDNLQVQYKlPLDDKRAPLTLEFPEgqLVGVSKKKVLITVSFASDKPTSFTANIDLIDTD 1378
                  7888999********************999987245555566788887743333457788889998888888877777777665 PP

  == domain 12  score: 0.2 bits;  conditional E-value: 0.14
                  EE-EEESS-SS-..-EEEEEEEE--XXXXXXXXXXXXXXXXXXXXX CS
         ASH   27 rlLtveNpseep..aevkvskvpaaekgfsveetelevqpgesvtl 70  
                  r++++ Np ++p   ev ++  pa+ + f+v ++e+++++++++ +
  KOO24482.1 1859 RTIELANPAKKPiiYEVRLEGPPAPRQCFKVGAREVRIEGKSTLPF 1904
                  788999******8779**********************99988755 PP

  == domain 13  score: 11.3 bits;  conditional E-value: 5e-05
                  -XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
         ASH   49 aekgfsveetelevqpgesvtltvtwtPteegavrevLqflvndvlkh 96  
                    + f + ++++ v++ ++ +++v++ P + g+ ++++ f +++v++ 
  KOO24482.1 2042 LPNSFFCAASTVSVDARGTASMQVQFLPFQLGEYTATVLFSDENVGEL 2089
                  45889999**********************************999876 PP

  == domain 14  score: 6.2 bits;  conditional E-value: 0.002
                  --EEEEEEE-EEESS-SS--EEEEEEEE--XXXXXXXXXX........XXXXXXXXXXXXXXXXXXXXX CS
         ASH   20 kvGssaerlLtveNpseepaevkvskvpaaekgfsveete........levqpgesvtltvtwtPteeg 80  
                  +vG sa+ ++tv+Np  e++ + +    +  k+f+++  +        l ++p +++t t+t+tP++  
  KOO24482.1 2565 AVGASATHEVTVSNPVGEELPLQLRVEGRNPKAFTLQGPKtgpggagaLLLPPYGELTCTLTYTPSALD 2633
                  79*************88886666655556688888887766799999999***************9864 PP

  == domain 15  score: -0.2 bits;  conditional E-value: 0.19
                  ---EEEEEEE-EEESS-SS--EEEE CS
         ASH   19 vkvGssaerlLtveNpseepaevkv 43  
                   ++G +++ ++ ++Np ++p+++++
  KOO24482.1 2671 APLGHTTSGSIALRNPFDQPLVIDL 2695
                  5899999999999999999976654 PP

  == domain 16  score: 4.2 bits;  conditional E-value: 0.0085
                  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
         ASH   65 gesvtltvtwtPteegavrevLqflvndvl 94  
                  g+++t+ v w P+  ++  + L + +n  +
  KOO24482.1 2838 GSTLTMAVDWRPLRPVRTSAALVVRKNSGG 2867
                  7899*********************99876 PP

  == domain 17  score: 7.4 bits;  conditional E-value: 0.00081
                  EE-----EEEEEEE-EEESS-SS--EEEEEEEE--XXXXXXXXXXXXXXXXXX..XXXXXXXXXXXXXX.XXXXXXXXXX CS
         ASH   15 sFgdvkvGssaerlLtveNpseepaevkvskvpaaekgfsveetelevqpges..vtltvtwtPteega.vrevLqflvn 91  
                   + + ++ ++a+ + ++ N  +++a  +   ++++   fsv++++ +++  ++    +tv +tP+e g+ vr +L +l++
  KOO24482.1 2886 IYLEAPIHKTAQVQFKLCNAFDDDAAYTAYFSADSASVFSVNPMQGVLPRAGTagALFTVAYTPAEYGKpVRGTLIILTE 2965
                  5556788999999999******9955555555559**********9998655422799*********999*****99876 PP

>> PapD-like  Flagellar-associated PapD-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.1   2.7e-06     0.016       9      77 ..      17      84 ..      11     106 .. 0.83
   2 ?    1.5   0.0     0.053   3.2e+02      10      92 ..     122     203 ..     117     211 .. 0.86
   3 ?    0.5   0.0      0.11   6.8e+02       8      47 ..     692     731 ..     687     768 .. 0.76
   4 ?    2.4   0.0     0.029   1.7e+02      21      46 ..     804     829 ..     785     845 .. 0.82
   5 ?   -1.0   0.0      0.34     2e+03       9      84 ..     898     970 ..     892     975 .. 0.75
   6 !    8.4   0.0   0.00038       2.3       2      44 ..     995    1037 ..     994    1053 .. 0.82
   7 ?   -2.5   0.0      0.99   5.9e+03      22      52 ..    1857    1889 ..    1847    1915 .. 0.85
   8 ?   -4.3   0.0         3   1.8e+04      24      44 ..    1966    1986 ..    1964    1989 .. 0.85

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 2.7e-06
   PapD-like  9 akveFGkvlpgnryvltvellnvstvpcRyrvrlpavvkkllsveYkrqFvaPGltvklkvelsgaqpl 77
                ++ +F  v p  ry + v + nvs+   R r+  p+  +++  v  +   +aPGl ++++++  +  p 
  KOO24482.1 17 TEANFESVAPSVRYTMKVSVKNVSMRGQRVRLIPPK-NREFTLVVQNDVELAPGLVMQAELQFYSDVPE 84
                6779***************************98777.7888888888889*********9999865554 PP

  == domain 2  score: 1.5 bits;  conditional E-value: 0.053
   PapD-like  10 kveFGkvlpgnryvltvellnvstvpcRyrvrlpavvkkllsveYk.rqFvaPGltvklkvelsgaqplGemdselsvvheggi 92 
                  ++FG vl +    + ++++n  t  ++  +   a ++++ s++ + +  + PG +    +el  a++ G+ +  + v+  g++
  KOO24482.1 122 GIDFGVVLLNSVPTRKLVVTNQGTRDGKIMLGPLA-LSEMYSIKPPiEATIKPGDSHTYTIELN-ATEVGKQELIVPVAIKGQM 203
                 6899999999999999*********9998876555.999999998734679************9.99***99999999888775 PP

  == domain 3  score: 0.5 bits;  conditional E-value: 0.11
   PapD-like   8 PakveFGkvlpgnryvltvellnvstvpcRyrvrlpavvk 47 
                 P+ v+FG++    ++++  ++ln   v     + l++++k
  KOO24482.1 692 PKTVDFGNISVYTQVARNFTVLNELRVNILVAIELGDEIK 731
                 99***************99999987776666666666665 PP

  == domain 4  score: 2.4 bits;  conditional E-value: 0.029
   PapD-like  21 ryvltvellnvstvpcRyrvrlpavv 46 
                  + ++v ++n  t+p+R+r   p+++
  KOO24482.1 804 SMSASVAITNHGTYPARFRWENPESM 829
                 5678899************9998876 PP

  == domain 5  score: -1.0 bits;  conditional E-value: 0.34
   PapD-like   9 akveFGkvlpgnryvltvellnvstvpcRyrvrlpavvkkllsveYkrqFvaPGltvklkvelsgaqplGemdsel 84 
                 ++veFG v  g    +   + n   + + +    p+   + +s++ + + v  G t++++ve+++  p Ge + +l
  KOO24482.1 898 KRVEFGVVPAGIVKEKNFLIKNQGQTTAVFTFDNPP---PGFSIKPQAGAVRVGQTMEVSVEVLAIPPRGERVLDL 970
                 567777777777666666677777777766666666...7888888999999999********9999999877655 PP

  == domain 6  score: 8.4 bits;  conditional E-value: 0.00038
   PapD-like    2 PtlevsPakveFGkvlpgnryvltvellnvstvpcRyrvrlpa 44  
                  P + v   +++FG+v+ g     +++l n+s+vp+  ++ l+ 
  KOO24482.1  995 PDVIVLEDELNFGRVVAGATKWHPLTLKNASIVPALLHLDLTG 1037
                  5666677899************************999987765 PP

  == domain 7  score: -2.5 bits;  conditional E-value: 0.99
   PapD-like   22 yvltvellnvstvpcRyrvrl..pavvkkllsv 52  
                   ++t+el n + +p  y vrl  p+ +++ ++v
  KOO24482.1 1857 LARTIELANPAKKPIIYEVRLegPPAPRQCFKV 1889
                  6899*************9997445667777777 PP

  == domain 8  score: -4.3 bits;  conditional E-value: 3
   PapD-like   24 ltvellnvstvpcRyrvrlpa 44  
                  ltv+l+n   vp+ +++ +++
  KOO24482.1 1966 LTVKLTNPFDVPAAFKLSFTE 1986
                  79******99**999998865 PP

>> TMEM131_like  Transmembrane protein 131-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.7   0.0       2.5   1.5e+04      37      66 ..      47      76 ..      32      80 .. 0.67
   2 ?   -3.1   0.0       1.7   9.9e+03       9      63 ..     124     178 ..     122     190 .. 0.66
   3 !   13.3   0.0   1.2e-05     0.074       8      82 ..     370     440 ..     363     442 .. 0.86
   4 !    4.3   0.0     0.008        48       5      68 ..     692     750 ..     690     755 .. 0.71
   5 ?   -2.3   0.0      0.93   5.5e+03      55      70 ..     845     860 ..     837     869 .. 0.86
   6 ?   -3.5   0.0       2.2   1.3e+04       5      25 ..    1336    1356 ..    1335    1358 .. 0.88
   7 ?   -2.3   0.0      0.89   5.3e+03      13      30 ..    1958    1975 ..    1953    1991 .. 0.77
   8 !    6.8   0.0    0.0013       7.7      36      81 ..    2035    2080 ..    2031    2082 .. 0.79
   9 ?    2.4   0.0     0.032   1.9e+02      53      83 ..    2722    2752 ..    2710    2753 .. 0.90
  10 ?   -1.9   0.0      0.71   4.2e+03      10      84 .]    2887    2964 ..    2881    2964 .. 0.73

  Alignments for each domain:
  == domain 1  score: -3.7 bits;  conditional E-value: 2.5
  TMEM131_like 37 lsvtsdsiefqssffeevvlpPggntslkv 66
                    +  +++ef+ +  ++v+l+Pg +++ ++
    KOO24482.1 47 RLIPPKNREFTLVVQNDVELAPGLVMQAEL 76
                  445556788888888889999887766655 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 1.7
  TMEM131_like   9 dFgesslgkaasrtvtvvNkhkkeklkllsvtsdsiefqssffeevvlpPggnts 63 
                   dFg   l ++ +r+++v N+ ++    +l +   s  +++    e+ ++Pg++ +
    KOO24482.1 124 DFGVVLLNSVPTRKLVVTNQGTRDGKIMLGPLALSEMYSIKPPIEATIKPGDSHT 178
                   7888888888899999999876654444444444444555555666666666665 PP

  == domain 3  score: 13.3 bits;  conditional E-value: 1.2e-05
  TMEM131_like   8 LdFgesslgkaasrtvtvvNkhkkeklkllsvtsdsiefqssffeevvlpPggntslkvvFLPrelGaseaslkl 82 
                     Fg   +++ +++ +t+ N   k++l  +  +++ ++f +  +e   +pP+g++++++ F P +lG+  + l+l
    KOO24482.1 370 FTFGSCDMYDHREAFLTLTN---KQELPYNFSFTTPAHFAAKPLE-GTVPPMGEMQVCLSFAPHQLGKLVGALQL 440
                   67999999999999999999...6778888888999999887665.679*******************9999876 PP

  == domain 4  score: 4.3 bits;  conditional E-value: 0.008
  TMEM131_like   5 PpeLdFgesslgkaasrtvtvvNkhkkeklkllsvtsdsiefqssffeevvlpPggntslkvvF 68 
                   P   dFg+ s+++  +r+ tv+N+     l+++ ++  +   ++      v+pPgg + + + F
    KOO24482.1 692 PKTVDFGNISVYTQVARNFTVLNE-----LRVNILVAIELGDEIKQCPPQVIPPGGTAGFDLFF 750
                   8899*******************4.....44444444444444445556677777777777666 PP

  == domain 5  score: -2.3 bits;  conditional E-value: 0.93
  TMEM131_like  55 vlpPggntslkvvFLP 70 
                   ++pP++   ++++F P
    KOO24482.1 845 EIPPEKTLPVEIIFTP 860
                   79************98 PP

  == domain 6  score: -3.5 bits;  conditional E-value: 2.2
  TMEM131_like    5 PpeLdFgesslgkaasrtvtv 25  
                    P  L+F e +l  +++++v +
    KOO24482.1 1336 PLTLEFPEGQLVGVSKKKVLI 1356
                    889********9999999976 PP

  == domain 7  score: -2.3 bits;  conditional E-value: 0.89
  TMEM131_like   13 sslgkaasrtvtvvNkhk 30  
                    s+l+++++ tv + N   
    KOO24482.1 1958 SKLYQPQMLTVKLTNPFD 1975
                    689***********9865 PP

  == domain 8  score: 6.8 bits;  conditional E-value: 0.0013
  TMEM131_like   36 llsvtsdsiefqssffeevvlpPggntslkvvFLPrelGaseaslk 81  
                    ++s+t + ++   +  ++v +  +g +s++v FLP +lG+  a++ 
    KOO24482.1 2035 VDSMTKKLPNSFFCAASTVSVDARGTASMQVQFLPFQLGEYTATVL 2080
                    5566666655555666889999******************999876 PP

  == domain 9  score: 2.4 bits;  conditional E-value: 0.032
  TMEM131_like   53 evvlpPggntslkvvFLPrelGaseaslkll 83  
                     v ++Pg + ++ + F  r + +s+a ++l+
    KOO24482.1 2722 GVTIAPGTSVQFPFSFVARDMSESHAAIVLH 2752
                    5789***********************9997 PP

  == domain 10  score: -1.9 bits;  conditional E-value: 0.71
  TMEM131_like   10 FgesslgkaasrtvtvvNkhkkeklkllsvtsdsiefqssffeevvlpPggn..tslkvvFLPrelGa.seaslkllT 84  
                    + e ++ k a+ +  + N   + + +    + ds+   s++  + vlp  g   + ++v++ P e G+ + ++l++lT
    KOO24482.1 2887 YLEAPIHKTAQVQFKLCNAFDDDAAYTAYFSADSASVFSVNPMQGVLPRAGTagALFTVAYTPAEYGKpVRGTLIILT 2964
                    566667777777777888888888888888888888888888888887666512579999999999964788888877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (3019 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       388  (0.0216409); expected 358.6 (0.02)
Passed bias filter:                      345  (0.0192426); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 1.19u 0.31s 00:00:01.50 Elapsed: 00:00:00.49
# Mc/sec: 18711.06
//
Query:       KOO24483.1  [L=326]
Description: rnp-1 like RNA-binding protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.2e-11   43.4   0.0      4e-11   42.6   0.0    1.4  1  RRM_1          RNA recognition motif. (a.k.a. RRM, RBD, or RN
     0.0073   16.7   8.6       0.02   15.3   8.6    1.7  1  K_channel_TID  Potassium channel Kv1.4 tandem inactivation do
  ------ inclusion threshold ------
      0.013   15.6   0.0       0.03   14.4   0.0    1.6  1  RRM_7          RNA recognition motif


Domain annotation for each model (and alignments):
>> RRM_1  RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.6   0.0   6.7e-15     4e-11       1      59 [.     120     173 ..     120     175 .. 0.96

  Alignments for each domain:
  == domain 1  score: 42.6 bits;  conditional E-value: 6.7e-15
                 EEEESETTTSSHHHHHHHHHTTSCEEEEEEEEETTTSEEEEEEEEESSHHHHHHHHHHH CS
       RRM_1   1 lfVgnLppdvteeeLkelFskfGpiksiklvrdetgkskgfafVeFeskedAekAleal 59 
                 lfVg+L++ +t++ L ++F k+G+++++  v+      +gf+fV+F s   A+ +l+++
  KOO24483.1 120 LFVGGLSHATTDDALIKYFAKYGKVQEAIAVPG-----RGFGFVTFVSAKGARYCLQQC 173
                 8************************99999997.....******************986 PP

>> K_channel_TID  Potassium channel Kv1.4 tandem inactivation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   8.6   3.3e-06      0.02      18      67 ..     239     294 ..     222     301 .. 0.72

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 3.3e-06
  K_channel_TID  18 PyGyaaqararerer......lahsraaaaaavaaaaaaaeGeGGggGGshkqhqs 67 
                     yG aa a a+ rer      +a +   aaa  a a++   GeG g GG+  ++++
     KOO24483.1 239 TYGVAAIAAAQKREReprapgVAGTSGGAAAGSAPAGSDELGEGEGNGGKRSKKKQ 294
                    49***999999999977666655555555555555555555999999999877655 PP

>> RRM_7  RNA recognition motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.4   0.0     5e-06      0.03       1      29 [.     117     145 ..     117     175 .. 0.88

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 5e-06
       RRM_7   1 srkvFvGGlPiDiteeelkatfkefgkvl 29 
                 s k+FvGGl    t+++l++ f ++gkv+
  KOO24483.1 117 SNKLFVGGLSHATTDDALIKYFAKYGKVQ 145
                 78************************985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (326 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       420  (0.0234257); expected 358.6 (0.02)
Passed bias filter:                      303  (0.0169); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.44u 0.22s 00:00:00.66 Elapsed: 00:00:00.39
# Mc/sec: 2536.49
//
Query:       KOO24484.1  [L=674]
Description: ubiquitin carboxyl-terminal hydrolase 4 isoform 2 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
      8e-37  127.1   0.0    1.1e-36  126.6   0.0    1.2  1  UCH          Ubiquitin carboxyl-terminal hydrolase
      1e-15   58.1   0.0      2e-15   57.2   0.0    1.5  1  DUSP         DUSP domain
    1.9e-06   27.7   0.0    2.8e-05   23.9   0.0    2.0  1  UCH_1        Ubiquitin carboxyl-terminal hydrolase
    6.8e-05   22.8   0.0    0.00013   21.9   0.0    1.4  1  Ubiquitin_3  Ubiquitin-like domain
    0.00053   19.8   0.0       0.86    9.3   0.0    2.2  2  USP7_C2      Ubiquitin-specific protease C-terminal


Domain annotation for each model (and alignments):
>> UCH  Ubiquitin carboxyl-terminal hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  126.6   0.0   3.1e-40   1.1e-36       1     146 [.     298     534 ..     298     621 .. 0.79

  Alignments for each domain:
  == domain 1  score: 126.6 bits;  conditional E-value: 3.1e-40
                 -EES-SSSTHHHHHHHHHHHTSHHHHHHHHTCHHCCSSTCCCCC-.TT.TTS.TTHHHHHHHHHHHHHHSH-CCEE--HHHHHHHHHHSGGGTSSSTCE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
         UCH   1 tGlsNlGntCymnsvlQcLfsipelrdyllsleevkkesrnkkelnesnplgkkgelakalkdlfkellkskskavsPkklkktlsklaksfsgykqqD 99 
                 +GlsNlGntC+mns+lQcL+++p lr  +l+       + +  +lne+nplg +gela++++ l+k +++   + vsP+++k +l+++a++f+gy qqD
  KOO24484.1 298 VGLSNLGNTCFMNSMLQCLSNVPMLRARFLD-------DGYLVDLNEDNPLGANGELARSFAALLKLMWGGAATTVSPRNFKHVLGRFAPQFAGYGQQD 389
                 6*************************88888.......7999999************************8899************************** PP

                 HHHHHHHHHHHHHHHHCC...................HCCCHHHHHHCCCTTSHHHHHH-EEEEE.................................. CS
                 xxxxxxxxxxxxxxxxxx...................xxxxxxxxxxxxxxxxxxxxxxxxxxxx.................................. RF
         UCH 100 aqEflaflLdqlhedlnr...................evaeekwkkhlkrndslitdlfegqlks.................................. 145
                 +qE+++++Ld+lhed nr                   e a+e +++h+ rnds + dlfeg +ks                                  
  KOO24484.1 390 SQELCNYVLDKLHEDTNRvrkkpyvetfeakgtepdvEIAREVTRRHKLRNDSYVADLFEGYFKStvicplcskvsvtfdsfmsvavplqpedtrrlsl 488
                 ***********************************998889999********************97777777777777777776666666666666666 PP

                 .............................................E CS
                 .............................................x RF
         UCH 146 .............................................k 146
                                                              +
  KOO24484.1 489 tlrrydgsftvlrvtvplagavkdlftavavearavdpsapalvpT 534
                 6666666666665555555555555555555555555555555550 PP

>> DUSP  DUSP domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.2   0.0   5.5e-19     2e-15       3      89 ..      36     118 ..      34     121 .. 0.84

  Alignments for each domain:
  == domain 1  score: 57.2 bits;  conditional E-value: 5.5e-19
                 EEEEEEHHHHHHHHHHHTTSTTSTTTTCGCS--SB-CGGGB........TTTEB-SS--BTTTEEEEEHHHHHHHHHHC-T----EEE CS
        DUSP   3 kyyliskkWleqwksyvsydavteekesgskpgpIdnsdllkappltk.engrlkpnlqegrdyeivpeevwkfLvqwYgggpeikrk 89 
                  yyl++++W+ qw  y + d    +   g+ pg+I  sdll    + +  ++ l++ l+eg+d+ ++ e++w +Lv+wYgggp+i r 
  KOO24484.1  36 LYYLVPQSWWTQWAAYSNWDP---TSSGGDAPGQIVTSDLL-VDDE-DaTEYLLREGLREGSDFKVLGEAAWSKLVEWYGGGPTIRRI 118
                 69***************4432...2444447**********.2333.2599**********************************996 PP

>> UCH_1  Ubiquitin carboxyl-terminal hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.9   0.0   7.7e-09   2.8e-05       1     169 [.     298     481 ..     298     502 .. 0.83

  Alignments for each domain:
  == domain 1  score: 23.9 bits;  conditional E-value: 7.7e-09
                 xxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxx......xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       UCH_1   1 sGLEnhivnsYlNslLQvlyfipplr.nlalshlakeckke......hcLlcElgflfdmldkakglncqasnFlralssipeasalglileeeeetek 92 
                 +GL n  +++++Ns+LQ+l  +p lr +++      + +++        L+  +  l++ +  +  +++   nF + l+ +   +  g   ++  +   
  KOO24484.1 298 VGLSNLGNTCFMNSMLQCLSNVPMLRaRFLDDGYLVDLNEDnplganGELARSFAALLKLMWGGAATTVSPRNFKHVLGRFA-PQFAGYG-QQ--D--- 389
                 7*************************87777777677666645555556677777777999999999************887.3333332.22..2... PP

                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.........................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       UCH_1  93 ssaislssliqsfnrflldqlekelketkkns.........................seeesaieqllgtkaettirclkCgseksrksstlvldlkyP 166
                           q++++++ld+l++++++ +k++                          +++s +++l++   ++t+ c  C++ ++  +s++++ +  P
  KOO24484.1 390 ---------SQELCNYVLDKLHEDTNRVRKKPyvetfeakgtepdveiarevtrrhkLRNDSYVADLFEGYFKSTVICPLCSKVSVTFDSFMSVAV--P 477
                 .........2679**************99988************************9899999**********************99999999755..7 PP

                 .xxx RF
       UCH_1 167 .kps 169
                  +p+
  KOO24484.1 478 lQPE 481
                 6654 PP

>> Ubiquitin_3  Ubiquitin-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.9   0.0   3.7e-08   0.00013      41      86 ..     187     232 ..     162     234 .. 0.84

  Alignments for each domain:
  == domain 1  score: 21.9 bits;  conditional E-value: 3.7e-08
                  S-EEEEEEETTTEEEE---TTSBTTTTT--TTEEEEEEE--TTS-- CS
  Ubiquitin_3  41 ketRLWkkgssegrelLtkpditvqeaglyegqvllleeknedGnW 86 
                     RLW+ ++++ + +L +  + + e++l+ +q +l+e ++ dG+W
   KOO24484.1 187 DKVRLWDYYKKKRYTQLSDTSKSLMETNLMPAQDVLVEVQQADGSW 232
                  568******************************************* PP

>> USP7_C2  Ubiquitin-specific protease C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.3   0.0   0.00024      0.86      28      84 ..     153     207 ..     138     230 .. 0.80
   2 !    8.2   0.0   0.00052       1.9      35     105 ..     500     575 ..     489     590 .. 0.78

  Alignments for each domain:
  == domain 1  score: 9.3 bits;  conditional E-value: 0.00024
     USP7_C2  28 klkkeeelellvpkngtvkdlleelqkkvklseeeskklrllevsnhkiqkvlkede 84 
                 k k   e+ l ++k+++v+ lle++ +   l+  + +k+rl++ +++k ++ l++++
  KOO24484.1 153 KAKASGEYVLHMSKSASVHALLEKMVAIWALP--GLDKVRLWDYYKKKRYTQLSDTS 207
                 4555678**********************998..78********9999998888654 PP

  == domain 2  score: 8.2 bits;  conditional E-value: 0.00052
     USP7_C2  35 lellvpkngtvkdlleelqkkvkl.....seeeskklrllevsnhkiqkvlkedealeslndsttlraeeipedel 105
                 l + vp  g vkdl+++++ +++      +    + l + ev+ +k +k+++++++le ++ds  +++ ++  d +
  KOO24484.1 500 LRVTVPLAGAVKDLFTAVAVEARAvdpsaPALVPTSLVCAEVYGSKLHKLFSPQSKLELIHDSDVIVIWQVHLDGI 575
                 67889999********99998854333326668899************************9996666655554444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (674 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       582  (0.0324614); expected 358.6 (0.02)
Passed bias filter:                      528  (0.0294495); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.61u 0.27s 00:00:00.88 Elapsed: 00:00:00.44
# Mc/sec: 4649.64
//
Query:       KOO24485.1  [L=450]
Description: inositol monophosphatase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.8e-22   78.8   0.1    8.5e-22   77.9   0.1    1.4  1  Inositol_P  Inositol monophosphatase family


Domain annotation for each model (and alignments):
>> Inositol_P  Inositol monophosphatase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   77.9   0.1   4.8e-26   8.5e-22       5     241 ..      56     348 ..      53     379 .. 0.77

  Alignments for each domain:
  == domain 1  score: 77.9 bits;  conditional E-value: 4.8e-26
                 HHHHHHHHHHHHHHHHHHHTTTSEEEESTTT...CCHHHHHHHHHHHHHHHHHHHHHHHHSTTSEEEHHCHHHHCC....................... CS
  Inositol_P   5 vtkaavelaakagevlreefsenelvieeks...kegeedlvtaadeaveelilealaekfpshkilgeetlakge....................... 77 
                 ++++a ++ + + e+++ +++  +l+ +e +    ++++ +++ ad +v++l++  l+ ++   +++gee+ a+++                       
  KOO24485.1  56 LLDVALTACQDMTELIEAVYK--QLNTKEPGasvLKEDKSFFSLADGVVQALLMRLLRGRV--GAVVGEEDEASISiegdgpfraaeieapaalepmii 150
                 56788999999*********7..44444444467567889******************999..566788877777777********************* PP

                 ..............CT.SSSSSEEEEEEEEETHHHHHHT-.SG-EEEEEEEE.TTEEEEEEEEETTTTEEECEE..TTTEEEETCEEEEECTTS..... CS
  Inositol_P  78 ..............kseltedgltwivDPiDGTknFvrgi.pqvaVsigllv.egkpvlGviaqPllgqlysaa..kgkGaflngeklplsrap..... 153
                               +se+ ++ lt  +DPiDGT++F  +  +q+ +++g+++  g++v G+++ Pl+ q+ +a   + +G++ ++  l++ ++      
  KOO24485.1 151 klrarmdalastipPSETLAA-LTAFIDPIDGTREFCTELgEQCSICVGFADgAGQAVGGLVYRPLCAQRSWALgcQREGTCRSE--LRTPETAlrtpe 246
                 ***********9988888888.**************99999*************************9999998610444555555..333333344333 PP

                 ....EGGGTEEEEEESSSSSSHHHHCHHHHHHHCCCCCH................EEEBESSHHHHHHHHHHTSTSEEEEEC.EBHHHHHHHHHHHHHT CS
  Inositol_P 154 ....piseallvtlfavssrkdtseasllekvesavsae................gvrsvgssalklaavaeGkadaylefgrekkWDhAAGeaileea 232
                     + + al++ ++a ++ +      +   v ++++                      +g ++ k ++v+e   ++y++ + +  WD +A++a+le+ 
  KOO24485.1 247 talrTPETALRAPETALRTPE------TAPDVGAFLCSNggtsrflqavqaelgyATYPAGGAGNKALLVLELPTAVYIQDRGVSRWDSCAAQAVLEAH 339
                 223322333333333333333......333333444444556666888888897766788999999999************98**************** PP

                 TEEEEESSS CS
  Inositol_P 233 GGvvtdakg 241
                 GGv+  ++ 
  KOO24485.1 340 GGVFSRLDT 348
                 ****98876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (450 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       329  (0.0183502); expected 358.6 (0.02)
Passed bias filter:                      264  (0.0147247); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.31s 00:00:00.77 Elapsed: 00:00:00.45
# Mc/sec: 3010.24
//
Query:       KOO24486.1  [L=283]
Description: tRNA pseudouridine synthase d [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      2e-23   82.9   0.0    3.7e-23   82.0   0.0    1.3  1  TruD      tRNA pseudouridine synthase D (TruD)


Domain annotation for each model (and alignments):
>> TruD  tRNA pseudouridine synthase D (TruD)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   82.0   0.0   2.1e-27   3.7e-23       7     139 ..      12     159 ..      10     175 .. 0.85

  Alignments for each domain:
  == domain 1  score: 82.0 bits;  conditional E-value: 2.1e-27
        TruD   7 yvtdtegigGrlrespeDFiVeEieefsgeeeadegeylvlrvekrnwdtldlvrelaralgisrkrvgfaGtKDkrAvTtQlisi.rkvepeeleal. 103
                 +vt+ egigG +++s+ DF V+E+ + s  e   +g++  +++++++ +t d+ ++la+ ++++ +++g+aG+KD+ A  tQ++s+ r+  p+el++  
  KOO24486.1  12 FVTSLEGIGGCIKASASDFCVTEVGDPS--EPCADGKHAHVTLTRSDLNTRDVQQRLAKLFSVQVDEIGVAGLKDRTARVTQTFSLpRERLPKELRTTe 108
                 89**********************4333..57899**************************************************96667777776667 PP

        TruD 104 ...............eikdvelevvgrarrklrlGdLaGNkFeirvrdvae 139
                                +   +  e+   +r kl+ G+L+GN+Fei++++ a 
  KOO24486.1 109 staqiaamlresagaNGWVAPAEEPSWHRSKLKKGHLVGNRFEIIISQSAA 159
                 7777777788665443345667888999******************99633 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (283 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       306  (0.0170673); expected 358.6 (0.02)
Passed bias filter:                      237  (0.0132188); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.23s 00:00:00.64 Elapsed: 00:00:00.37
# Mc/sec: 2271.26
//
Query:       KOO24487.1  [L=174]
Description: hypothetical protein Ctob_004406 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (174 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       294  (0.016398); expected 358.6 (0.02)
Passed bias filter:                      143  (0.0079759); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.25s 00:00:00.61 Elapsed: 00:00:00.38
# Mc/sec: 1359.82
//
Query:       KOO24488.1  [L=79]
Description: hypothetical protein Ctob_004407 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (79 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       455  (0.0253779); expected 358.6 (0.02)
Passed bias filter:                      330  (0.0184059); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.23s 00:00:00.57 Elapsed: 00:00:00.38
# Mc/sec: 620.70
//
Query:       KOO24489.1  [L=530]
Description: surface antigen -like protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.9e-94  311.0   0.0    7.7e-35  119.6   0.0    3.1  3  LRR_5       BspA type Leucine rich repeat region (6 copies)
    3.5e-20   71.5   0.0      0.011   15.5   0.0    8.0 11  LRR_8       Leucine rich repeat


Domain annotation for each model (and alignments):
>> LRR_5  BspA type Leucine rich repeat region (6 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  119.6   0.0   8.6e-39   7.7e-35       3     125 ..     250     374 ..     248     375 .. 0.97
   2 !  103.9   0.0   6.4e-34   5.7e-30       1     103 [.     340     444 ..     340     445 .. 0.80
   3 !   99.8   0.0   1.2e-32     1e-28       1      94 [.     432     526 ..     432     529 .. 0.90

  Alignments for each domain:
  == domain 1  score: 119.6 bits;  conditional E-value: 8.6e-39
       LRR_5   3 IgsyaFync.nltsitipssvtsIgeyaFsnctslksitlpsslteigsyaFsncssltsitipssltsigeyaFsncsslkeitlpsnlttigssaFs 100
                 +++ aF++  ++tsi +p  +tsIg+ aF +c+s++si+lp +lt+ig+yaF++cssl si++p  lts+g+ aF++css+++i+lp  lt++g  aF 
  KOO24489.1 250 VPAGAFRDDtSMTSIALPAGLTSIGDDAFWGCSSMTSIELPTGLTSIGEYAFNDCSSLMSIELPAGLTSLGKGAFYGCSSMTSIQLPAGLTSLGAFAFV 348
                 56789*9988***************************************************************************************** PP

       LRR_5 101 nc.slesitipssvtkigsnaFsncs 125
                 +c s+ si +p+ +t++gs+aF++cs
  KOO24489.1 349 HCsSMMSIALPAGLTSLGSSAFASCS 374
                 **9**********************6 PP

  == domain 2  score: 103.9 bits;  conditional E-value: 6.4e-34
       LRR_5   1 teIgsyaFync.nltsitipssvtsIgeyaFsnctslksitlpsslteigsyaFsncssltsitipssltsigeyaFsncsslkeitlpsnlttigssa 98 
                 t++g++aF +c ++ si +p  +ts+g++aF++c+s++si+lp +lt+ig +aF++cssltsi++p  lts+g +aF++cssl +i+lp  lt++g+ a
  KOO24489.1 340 TSLGAFAFVHCsSMMSIALPAGLTSLGSSAFASCSSMTSIELPAGLTSIGVNAFYGCSSLTSIELPAGLTSLGVSAFRGCSSLASIELPAGLTSLGNGA 438
                 567888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 PP

       LRR_5  99 Fsnc.s 103
                 F++c s
  KOO24489.1 439 FEGCsS 444
                 888844 PP

  == domain 3  score: 99.8 bits;  conditional E-value: 1.2e-32
       LRR_5   1 teIgsyaFync.nltsitipssvtsIgeyaFsnctslksitlpsslteigsyaFsncssltsitipssltsigeyaFsncsslkeitlpsnltti 94 
                 t++g+ aF++c +ltsi++p  +tsIg +aF++c+sl+si+lp +lt+ig +aFs+css+tsi++p  lts++e+aF +cssl +i lp  lt+i
  KOO24489.1 432 TSLGNGAFEGCsSLTSIELPAGLTSIGVNAFYGCSSLTSIELPAGLTSIGVRAFSGCSSMTSIELPAGLTSLSESAFCGCSSLASIALPAGLTSI 526
                 57899999999999999999999999999999999999999999999999999999999999999999999999999999999999999999988 PP

>> LRR_8  Leucine rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.0      0.18   1.6e+03      47      58 ..     150     161 ..     148     163 .. 0.73
   2 !    3.8   0.0    0.0054        48      37      56 ..     270     289 ..     250     291 .. 0.75
   3 !    7.5   0.0   0.00039       3.5      13      56 ..     270     312 ..     259     314 .. 0.79
   4 !   12.4   0.0   1.1e-05     0.097      13      56 ..     293     335 ..     291     337 .. 0.94
   5 !    5.7   0.0    0.0014        12      13      33 ..     316     336 ..     314     360 .. 0.76
   6 !    3.2   0.0    0.0083        74      13      56 ..     339     381 ..     336     383 .. 0.67
   7 !   10.5   0.0   4.4e-05       0.4      13      56 ..     362     404 ..     360     406 .. 0.93
   8 !   15.3   0.0   1.4e-06     0.012      13      56 ..     408     450 ..     406     452 .. 0.95
   9 !   15.5   0.0   1.2e-06     0.011      13      56 ..     431     473 ..     429     475 .. 0.95
  10 !   11.9   0.0   1.6e-05      0.14      13      56 ..     454     496 ..     451     498 .. 0.94
  11 !   10.9   0.0   3.2e-05      0.29      13      56 ..     477     519 ..     475     521 .. 0.94

  Alignments for each domain:
  == domain 1  score: -1.0 bits;  conditional E-value: 0.18
                 T--S-.EEE--S CS
       LRR_8  47 gLpsLrsLdLsg 58 
                 +L  +++LdLsg
  KOO24489.1 150 NLVEVTELDLSG 161
                 677888888887 PP

  == domain 2  score: 3.8 bits;  conditional E-value: 0.0054
                 --GGGGGGGTT--S-.EEE- CS
       LRR_8  37 lttlspgafsgLpsLrsLdL 56 
                 lt++  +af+g++s +s+ L
  KOO24489.1 270 LTSIGDDAFWGCSSMTSIEL 289
                 56666666666666666655 PP

  == domain 3  score: 7.5 bits;  conditional E-value: 0.00039
                 -SEE-TTSSTT-TT--EEE--SS---GGGGGGGTT--S-.EEE- CS
       LRR_8  13 ltslddeaFkglsnLkvLdLsnNllttlspgafsgLpsLrsLdL 56 
                 lts++d+aF g+s++++++L    lt++ + af +++sL s+ L
  KOO24489.1 270 LTSIGDDAFWGCSSMTSIELPTG-LTSIGEYAFNDCSSLMSIEL 312
                 78888888888888888888766.88888888888888777665 PP

  == domain 4  score: 12.4 bits;  conditional E-value: 1.1e-05
                 -SEE-TTSSTT-TT--EEE--SS---GGGGGGGTT--S-.EEE- CS
       LRR_8  13 ltslddeaFkglsnLkvLdLsnNllttlspgafsgLpsLrsLdL 56 
                 lts++  aF+++s+L++++L    lt+l +gaf g++s +s+ L
  KOO24489.1 293 LTSIGEYAFNDCSSLMSIELPAG-LTSLGKGAFYGCSSMTSIQL 335
                 99*******************99.****************9988 PP

  == domain 5  score: 5.7 bits;  conditional E-value: 0.0014
                 -SEE-TTSSTT-TT--EEE-- CS
       LRR_8  13 ltslddeaFkglsnLkvLdLs 33 
                 ltsl+++aF+g+s++++++L 
  KOO24489.1 316 LTSLGKGAFYGCSSMTSIQLP 336
                 899999999999999999885 PP

  == domain 6  score: 3.2 bits;  conditional E-value: 0.0083
                 -SEE-TTSSTT-TT--EEE--SS---GGGGGGGTT--S-.EEE- CS
       LRR_8  13 ltslddeaFkglsnLkvLdLsnNllttlspgafsgLpsLrsLdL 56 
                 ltsl+  aF ++s+++++ L    lt+l   af++++s +s+ L
  KOO24489.1 339 LTSLGAFAFVHCSSMMSIALPAG-LTSLGSSAFASCSSMTSIEL 381
                 66777777777777777777666.66666677777766666655 PP

  == domain 7  score: 10.5 bits;  conditional E-value: 4.4e-05
                 -SEE-TTSSTT-TT--EEE--SS---GGGGGGGTT--S-.EEE- CS
       LRR_8  13 ltslddeaFkglsnLkvLdLsnNllttlspgafsgLpsLrsLdL 56 
                 ltsl+ +aF ++s++++++L    lt++  +af g++sL+s+ L
  KOO24489.1 362 LTSLGSSAFASCSSMTSIELPAG-LTSIGVNAFYGCSSLTSIEL 404
                 899*****************999.9***************9988 PP

  == domain 8  score: 15.3 bits;  conditional E-value: 1.4e-06
                 -SEE-TTSSTT-TT--EEE--SS---GGGGGGGTT--S-.EEE- CS
       LRR_8  13 ltslddeaFkglsnLkvLdLsnNllttlspgafsgLpsLrsLdL 56 
                 ltsl+ +aF+g+s+L +++L    lt+l +gaf+g++sL+s+ L
  KOO24489.1 408 LTSLGVSAFRGCSSLASIELPAG-LTSLGNGAFEGCSSLTSIEL 450
                 89********************9.*****************988 PP

  == domain 9  score: 15.5 bits;  conditional E-value: 1.2e-06
                 -SEE-TTSSTT-TT--EEE--SS---GGGGGGGTT--S-.EEE- CS
       LRR_8  13 ltslddeaFkglsnLkvLdLsnNllttlspgafsgLpsLrsLdL 56 
                 ltsl+ +aF+g+s+L++++L    lt++  +af g++sL+s+ L
  KOO24489.1 431 LTSLGNGAFEGCSSLTSIELPAG-LTSIGVNAFYGCSSLTSIEL 473
                 89********************9.*****************988 PP

  == domain 10  score: 11.9 bits;  conditional E-value: 1.6e-05
                 -SEE-TTSSTT-TT--EEE--SS---GGGGGGGTT--S-.EEE- CS
       LRR_8  13 ltslddeaFkglsnLkvLdLsnNllttlspgafsgLpsLrsLdL 56 
                 lts++  aF+g+s+L++++L    lt++  +afsg++s +s+ L
  KOO24489.1 454 LTSIGVNAFYGCSSLTSIELPAG-LTSIGVRAFSGCSSMTSIEL 496
                 89*******************99.***************99988 PP

  == domain 11  score: 10.9 bits;  conditional E-value: 3.2e-05
                 -SEE-TTSSTT-TT--EEE--SS---GGGGGGGTT--S-.EEE- CS
       LRR_8  13 ltslddeaFkglsnLkvLdLsnNllttlspgafsgLpsLrsLdL 56 
                 lts++  aF+g+s++++++L    lt+ls+ af g++sL s+ L
  KOO24489.1 477 LTSIGVRAFSGCSSMTSIELPAG-LTSLSESAFCGCSSLASIAL 519
                 89*******************99.***************98866 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (530 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       287  (0.0160076); expected 358.6 (0.02)
Passed bias filter:                      231  (0.0128842); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.52u 0.25s 00:00:00.77 Elapsed: 00:00:00.41
# Mc/sec: 3915.04
//
Query:       KOO24490.1  [L=131]
Description: tRNA pseudouridine synthase d [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.2e-06   26.2   0.0    3.5e-06   26.1   0.0    1.0  1  TruD      tRNA pseudouridine synthase D (TruD)


Domain annotation for each model (and alignments):
>> TruD  tRNA pseudouridine synthase D (TruD)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.1   0.0   1.9e-10   3.5e-06     374     416 .]      33      78 ..       5      78 .. 0.83

  Alignments for each domain:
  == domain 1  score: 26.1 bits;  conditional E-value: 1.9e-10
        TruD 374 skGtrRaillrve...dlelsaeedeltleFsLpkGsYATvvlrEi 416
                  +G rR + l+v     +e++  + ++ ++FsLp G YAT++lrE+
  KOO24490.1  33 LQGGRRVAKLPVPedlTIEAHVPSGGVRFTFSLPAGAYATTFLREF 78 
                 6899******9997665566667778*******************7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (131 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       292  (0.0162865); expected 358.6 (0.02)
Passed bias filter:                      228  (0.0127168); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.26s 00:00:00.63 Elapsed: 00:00:00.41
# Mc/sec: 948.39
//
Query:       KOO24491.1  [L=820]
Description: otu domain-containing protein 3-like protein, partial [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.3e-09   38.7   0.0      4e-09   37.0   0.0    1.9  1  OTU              OTU-like cysteine protease
     0.0051   14.4   7.9     0.0074   13.9   7.9    1.1  1  DUF3584          Protein of unknown function (DUF3584)
  ------ inclusion threshold ------
      0.013   15.0   3.7       0.72    9.3   0.0    2.6  3  Peptidase_C65    Peptidase C65 Otubain
      0.037   14.2  16.7        0.1   12.8  16.7    1.8  1  ATG16            Autophagy protein 16 (ATG16)
      0.039   14.2   0.8       0.22   11.8   0.1    2.2  2  DUF948           Bacterial protein of unknown function (DUF94
      0.079   13.3   2.4       0.17   12.2   1.7    2.0  1  TSNAXIP1_N       Translin-associated factor X-interacting N-t
       0.23   10.4   2.1       0.35    9.8   1.4    1.6  1  IFT57            Intra-flagellar transport protein 57
       0.33   10.4   6.7       0.58    9.6   6.7    1.4  1  HMMR_N           Hyaluronan mediated motility receptor N-term
       0.47   10.6   2.6        3.6    7.8   1.8    2.5  1  Cnn_1N           Centrosomin N-terminal motif 1
        0.7    8.7  14.7        2.4    7.0  12.6    2.1  2  Spc7             Spc7 kinetochore protein
       0.87   10.0  13.5       0.25   11.8   8.4    2.2  2  Fez1             Fez1
       0.89   10.1  16.4      0.024   15.2   7.3    2.4  2  APG6_N           Apg6 coiled-coil region
        1.1    8.8  12.1        1.8    8.1  12.1    1.3  1  HAUS-augmin3     HAUS augmin-like complex subunit 3
          2    8.4  10.2        3.7    7.6   9.3    1.9  1  CENP-F_leu_zip   Leucine-rich repeats of kinetochore protein 
        3.4    7.9  10.3        2.7    8.2   3.4    2.6  2  TMF_TATA_bd      TATA element modulatory factor 1 TATA bindin
        4.6    7.7   8.2         20    5.7   0.5    2.8  2  Snapin_Pallidin  Snapin/Pallidin


Domain annotation for each model (and alignments):
>> OTU  OTU-like cysteine protease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.0   0.0   3.5e-12     4e-09       2      91 ..     262     354 ..     261     376 .. 0.85

  Alignments for each domain:
  == domain 1  score: 37.0 bits;  conditional E-value: 3.5e-12
                 -SS-HHHHHHHHCCCSS.SHCCHHHHHHHHHCHHHHHHTSSHHCCHHHHCCHHH.......HHHHTTSTT.HHHHHHHHHHHHHHCTS-EEEETTSSS CS
         OTU   2 gDGnCLlravsqqlwgvsdelrkakvseLreklaeylrehseelelfleeeeeg.......ylkeiekta.awggeleifalahiLrrpIiVlksesg 91 
                 gDGnC +ra ++q+      ++++ +   r+++ +y+reh+ee+e f+    +        y+ + + ++ + +ge+e+ a+a+ +++ I V+  +++
  KOO24491.1 262 GDGNCFFRALAKQVD-----GDEQLHGRARQETIRYMREHREEFEQFVHIYSDInykdfdsYVDNTSIEGtYVEGEIELMAAAKTFNVRIRVYGRSED 354
                 8*************6.....777788999*****************998776667789999**999999845588*****************765443 PP

>> DUF3584  Protein of unknown function (DUF3584)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.9   7.9   6.6e-06    0.0074     772     896 ..     514     633 ..     504     667 .. 0.73

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 6.6e-06
     DUF3584 772 vkelkrkieeLekkieriekrreevreYraflqetwlkvdslaeerpalkeqveelesaaeeleqeltrliedtklerkklekerkalekqldqldenl 870
                 v++++r+ eeL+ +i+ +e++r++v++ +++   + ++   l+++ + ++ +++e +++++  +qel++l +++++ ++++ ++++ ++++  +l+ + 
  KOO24491.1 514 VAARHREAEELKLRIAATEQQRAAVAKEHEWCLRRLAS---LRGQCDSYAGTLREKQHELHSATQELEALAREVTAVQTRMASQLDEAHALNRALSTAR 609
                 678899**************************999977...*********************9999999988887777777666555555555555444 PP

     DUF3584 871 rklrdllsklaelkldadaeqaegel 896
                  ++r+l +  a l  +a +e+ +  +
  KOO24491.1 610 EEVRALKQSQALLLQQAHVESKQ--V 633
                 44444444444444444444443..4 PP

>> Peptidase_C65  Peptidase C65 Otubain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3   0.0   0.00064      0.72      45      57 ..     260     272 ..     237     275 .. 0.84
   2 ?    6.2   0.2    0.0056       6.3     148     202 ..     291     350 ..     285     384 .. 0.78
   3 ?   -2.7   0.1       2.9   3.2e+03       4      29 ..     566     592 ..     557     625 .. 0.61

  Alignments for each domain:
  == domain 1  score: 9.3 bits;  conditional E-value: 0.00064
                    B--SSTHHHHHHH CS
  Peptidase_C65  45 vrgDGnCfyRafl 57 
                    v gDGnCf+Ra++
     KOO24491.1 260 VVGDGNCFFRALA 272
                    679********86 PP

  == domain 2  score: 6.2 bits;  conditional E-value: 0.0056
                    HHHHHTHHHHGGGS-TT.....--HHHHHHH.HTSSTT--B-HHHHHHHHHHTT--EEEEE CS
  Peptidase_C65 148 aelkthadeyepFldel.....stveeFceq.evepvnkEaDnvqitaLaealgvkvrVey 202
                     ++++h++e+e+F+        ++ +++  + ++e +  E + ++++a a+ ++v++rV+ 
     KOO24491.1 291 RYMREHREEFEQFVHIYsdinyKDFDSYVDNtSIEGTYVEGE-IELMAAAKTFNVRIRVYG 350
                    689***********9887777777888875426888888875.778888999999999975 PP

  == domain 3  score: -2.7 bits;  conditional E-value: 2.9
                    CCSXSB---EETHHHHTTTTT.THHHH CS
  Peptidase_C65   4 kqkplvsekkplsaLakeyek.naail 29 
                    kq++l s++++l+aLa+e  + +  + 
     KOO24491.1 566 KQHELHSATQELEALAREVTAvQTRMA 592
                    455555666666666666554333333 PP

>> ATG16  Autophagy protein 16 (ATG16)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8  16.7   9.1e-05       0.1      59     164 ..     516     616 ..     468     634 .. 0.80

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 9.1e-05
       ATG16  59 kekeasasqsnskqsakiqsleqklaqlreelaelyksrgelaqrllelneelqkleeklkedeerlaeleaeraaletklkdreeelrekeklvqdlq 157
                  + ++     +++ + +i+++eq++a++ +e +  +++ + l  +  +   +l++++ +l + +++l++l +e++a++t+++++ +e + +++++ + +
  KOO24491.1 516 ARHRE-----AEELKLRIAATEQQRAAVAKEHEWCLRRLASLRGQCDSYAGTLREKQHELHSATQELEALAREVTAVQTRMASQLDEAHALNRALSTAR 609
                 22222.....3344679********************************************************************************** PP

       ATG16 158 DElsaLq 164
                 +E+ aL+
  KOO24491.1 610 EEVRALK 616
                 ***9985 PP

>> DUF948  Bacterial protein of unknown function (DUF948)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.1   0.00019      0.22      21      88 ..     549     616 ..     545     617 .. 0.93
   2 ?    0.1   0.1      0.91     1e+03      29      49 ..     641     661 ..     624     664 .. 0.60

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 0.00019
      DUF948  21 llklkktldeaaatieelekqvdpilkevedllakvnelledvneklekvdplteavadlgesvseln 88 
                 l +l+   d+ a t++e ++++++ ++e+e+l ++v +++  + ++l++  +l  a+ ++ e v++l+
  KOO24491.1 549 LASLRGQCDSYAGTLREKQHELHSATQELEALAREVTAVQTRMASQLDEAHALNRALSTAREEVRALK 616
                 567788899999************************************************99999986 PP

  == domain 2  score: 0.1 bits;  conditional E-value: 0.91
      DUF948  29 deaaatieelekqvdpilkev 49 
                 ++++a i +l++q+d+++ +v
  KOO24491.1 641 SQLTAEIGVLQQQIDATVANV 661
                 444555555555555554443 PP

>> TSNAXIP1_N  Translin-associated factor X-interacting N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   1.7   0.00016      0.17      42     111 .]     547     616 ..     536     628 .. 0.70

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 0.00016
  TSNAXIP1_N  42 dlLseIKkEYelyiahllesqreaqylkaklktlsessdkraleleekreelralekeskalleeidklr 111
                 + L++ + + + y  +l+e+q e++   ++l+ l+++ +  +  +  + +e  al+++ +++ ee+  l+
  KOO24491.1 547 RRLASLRGQCDSYAGTLREKQHELHSATQELEALAREVTAVQTRMASQLDEAHALNRALSTAREEVRALK 616
                 5689999999*********************777776664444455555555555555555555554443 PP

>> IFT57  Intra-flagellar transport protein 57
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   1.4   0.00031      0.35     264     351 ..     527     615 ..     498     627 .. 0.80

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.00031
       IFT57 264 rEkylnsqleellqeyreaqeelsevkekykqlsegvseltrelaeiseelekvkqemeergssmtDg.splvkikkaltklkkEikqm 351
                 r    ++q     +e++ + ++l++++ +++   +++ e+++el++ ++ele++ +e+   +++m+ + +  + +  al++ ++E++ +
  KOO24491.1 527 RIAATEQQRAAVAKEHEWCLRRLASLRGQCDSYAGTLREKQHELHSATQELEALAREVTAVQTRMASQlDEAHALNRALSTAREEVRAL 615
                 44445678888889999999999999999999999999999999999999999999999999888766577889999999999999876 PP

>> HMMR_N  Hyaluronan mediated motility receptor N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   6.7   0.00052      0.58     111     225 ..     510     632 ..     479     662 .. 0.59

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 0.00052
      HMMR_N 111 veakLlaavrektslsanvasLekqlaelkranelLksKvse.....dgtkKklnsLsleLmklrnkleakekevsvkQedmeaklqv...tqknLees 201
                 v+  + a  re  +l+  +a  e+q+a + +  e    +++      d+    l+    eL  + ++lea  +ev++ Q  m ++l +   +++ L ++
  KOO24491.1 510 VSVHVAARHREAEELKLRIAATEQQRAAVAKEHEWCLRRLASlrgqcDSYAGTLREKQHELHSATQELEALAREVTAVQTRMASQLDEahaLNRALSTA 608
                 444445555555555556666666666655555543222222111113344555555668888888888888888888888888886511146788888 PP

      HMMR_N 202 kakvaqLkeklvslekek.ieekse 225
                 +++v++Lk+    l ++  +e k +
  KOO24491.1 609 REEVRALKQSQALLLQQAhVESK-Q 632
                 88888888765554444304444.3 PP

>> Cnn_1N  Centrosomin N-terminal motif 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.8   1.8    0.0032       3.6      15      72 ..     520     576 ..     513     612 .. 0.59

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 0.0032
      Cnn_1N  15 ENFdLKLriyfLeerleklseeqkeellkenielkveveslqkelkekkkllreaeka 72 
                 E   LKLri+  e++  + ++ ++e +l+ +  l+ +  s   +l ek+ +l++a ++
  KOO24491.1 520 EAEELKLRIAATEQQRAAVAK-EHEWCLRRLASLRGQCDSYAGTLREKQHELHSATQE 576
                 666899999666666666655.445555555555555555555555555555554443 PP

>> Spc7  Spc7 kinetochore protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.7   1.4     0.021        23     180     244 ..     475     543 ..     450     558 .. 0.49
   2 ?    7.0  12.6    0.0022       2.4     161     284 ..     527     628 ..     507     665 .. 0.46

  Alignments for each domain:
  == domain 1  score: 3.7 bits;  conditional E-value: 0.021
        Spc7 180 eeeleklqeaaeelesid....keeLeelreelaelkaeieekkkelaelqeqleeleekieelkeqks 244
                 ++ le+  + + +l++i+      eL   + +l+++++ ++++ +e +el+ ++++ e++ ++++++ +
  KOO24491.1 475 RDALERASSGEIQLQAIElegrVRELGDSKGALQAVSVHVAARHREAEELKLRIAATEQQRAAVAKEHE 543
                 333333333333333322101123444445555555555555555555555555555555555555444 PP

  == domain 2  score: 7.0 bits;  conditional E-value: 0.0022
        Spc7 161 qeeeldellpeleeekaeleeeleklqeaaeelesidkeeLeelreelaelkaeieekkkelaelqeqleeleekieelkeqkseleeeiaeaervlee 259
                 + +  ++   ++ +e++                      +L++lr + ++   +++ek+ el + +++le+l+ +++++++++++  +e  + +r l  
  KOO24491.1 527 RIAATEQQRAAVAKEHEWC------------------LRRLASLRGQCDSYAGTLREKQHELHSATQELEALAREVTAVQTRMASQLDEAHALNRALS- 606
                 3333333333333333333..................4445555555555555555555555555555555555555555544444444444444443. PP

        Spc7 260 ckgwsesevsrlkeevkaleeltgw 284
                      ++ev++lk++   l ++  +
  KOO24491.1 607 ---TAREEVRALKQSQALLLQQAHV 628
                 ...2334444444444333333332 PP

>> Fez1  Fez1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.3   0.9      0.74   8.3e+02      91     155 ..     466     539 ..     444     547 .. 0.47
   2 ?   11.8   8.4   0.00022      0.25      32     112 ..     548     628 ..     528     663 .. 0.75

  Alignments for each domain:
  == domain 1  score: 0.3 bits;  conditional E-value: 0.74
        Fez1  91 kleeelkelreelselsleeeeaa........lesdeakaqrqe...........aeeleelkreverlraeLkeerqkkeeqa 155
                 +l ++ ++ r++l+++s+ e + +                   e           + ++++ +re e+l+ +++  +q++ + a
  KOO24491.1 466 TLRADHASARDALERASSGEIQLQaielegrvR----------ElgdskgalqavSVHVAARHREAEELKLRIAATEQQRAAVA 539
                 444444455555554443333333222222221..........11222233332334445555555555555555555544443 PP

  == domain 2  score: 11.8 bits;  conditional E-value: 0.00022
        Fez1  32 eivalkaqlrelrakleekeeeikeleesleektlelevcenelqrkkseaellrekvekleeelkelreelselsleeee 112
                  + +l++q+     +l+ek++e++++ ++le  ++e+  ++ +++ + +ea+ l+  ++++ ee++ l+++ + l ++++ 
  KOO24491.1 548 RLASLRGQCDSYAGTLREKQHELHSATQELEALAREVTAVQTRMASQLDEAHALNRALSTAREEVRALKQSQALLLQQAHV 628
                 5678******************************************************************66554333222 PP

>> APG6_N  Apg6 coiled-coil region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   1.8       1.6   1.8e+03      51      83 ..     509     541 ..     466     545 .. 0.57
   2 ?   15.2   7.3   2.1e-05     0.024      16     128 ..     547     656 ..     543     661 .. 0.85

  Alignments for each domain:
  == domain 1  score: -0.6 bits;  conditional E-value: 1.6
      APG6_N  51 eleeeleklekeeeelleeLkelekereeleae 83 
                 +    +++ ++e eel   ++++e++r+++++e
  KOO24491.1 509 AVSVHVAARHREAEELKLRIAATEQQRAAVAKE 541
                 333334444455555555555555555555544 PP

  == domain 2  score: 15.2 bits;  conditional E-value: 2.1e-05
      APG6_N  16 kqleqaekerdaYeeflkklkkekkeeekqdeeleeleeeleklekeeeelleeLkelekereeleaelaaleeelealeeeeerfwreynelqlelle 114
                 ++l++++ ++d+Y   l++ + e  +++   +ele+l +e+ +++   ++ l e  +l ++ +  ++e++al++  + l ++ + + ++   l+l l++
  KOO24491.1 547 RRLASLRGQCDSYAGTLREKQHELHSAT---QELEALAREVTAVQTRMASQLDEAHALNRALSTAREEVRALKQSQALLLQQAHVESKQVAPLHLGLSQ 642
                 6899999***********9998876665...69999999999999999999999999999999999999999999999999999999999999999999 PP

      APG6_N 115 leeeldsleaqyeh 128
                 l  e   l+ q++ 
  KOO24491.1 643 LTAEIGVLQQQIDA 656
                 99998888888876 PP

>> HAUS-augmin3  HAUS augmin-like complex subunit 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.1  12.1    0.0016       1.8      32     176 ..     474     625 ..     466     630 .. 0.79

  Alignments for each domain:
  == domain 1  score: 8.1 bits;  conditional E-value: 0.0016
  HAUS-augmin3  32 ayeeLk..ksGkpiLegeaLeeaLktie..psdlkq..edvellevileeeeesleaLeqelqeLqkekalklkrlnkLqvqaaslqqelrkleeee 122
                   a+++L+   sG+  L+  +Le   ++++  ++ l+    +v + + ++ee++  + a eq+  +  ke +  l+rl  L  q  s + +lr+ + e 
    KOO24491.1 474 ARDALEraSSGEIQLQAIELEGRVRELGdsKGALQAvsVHVAARHREAEELKLRIAATEQQRAAVAKEHEWCLRRLASLRGQCDSYAGTLREKQHEL 570
                   55666533356666666666666666664322233355677888999999999999***************************************** PP

  HAUS-augmin3 123 keakkklkeaqeelraenaetnavLqqlteeakqlaeyfeeaek.gqppvlLsql 176
                    +a+++l+ + +e++a   ++ ++L++  +  + l+   ee +  +q+++lL q 
    KOO24491.1 571 HSATQELEALAREVTAVQTRMASQLDEAHALNRALSTAREEVRAlKQSQALLLQQ 625
                   ***********************99999997777777777776686666666654 PP

>> CENP-F_leu_zip  Leucine-rich repeats of kinetochore protein Cenp-F/LEK1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.6   9.3    0.0033       3.7      18     137 ..     513     632 ..     498     635 .. 0.82

  Alignments for each domain:
  == domain 1  score: 7.6 bits;  conditional E-value: 0.0033
  CENP-F_leu_zip  18 kadsLkdkvenLerelemseenqekvileaEtskaevetlkeeieelaeelreleldLvalrsekeeLekelqkkqerv.seLeslnsslenlle 111
                     + +  +  +e+L+  +   e+++ +v  e E     + +l+ + +  a +lre +++L + ++e e L++e+   q r+ s+L++++  l++ l+
      KOO24491.1 513 HVAARHREAEELKLRIAATEQQRAAVAKEHEWCLRRLASLRGQCDSYAGTLREKQHELHSATQELEALAREVTAVQTRMaSQLDEAH-ALNRALS 606
                     55555667788888899999999999****************************************************944576665.6888888 PP

  CENP-F_leu_zip 112 ekEqekvqmkeeskaaveeLqtqlke 137
                      + +e + +k+++   +++ +++ k+
      KOO24491.1 607 TAREEVRALKQSQALLLQQAHVESKQ 632
                     88888888888777666666666655 PP

>> TMF_TATA_bd  TATA element modulatory factor 1 TATA binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.3   0.6     0.085        95      32      84 ..     494     546 ..     482     553 .. 0.80
   2 ?    8.2   3.4    0.0024       2.7      19      85 ..     561     624 ..     554     657 .. 0.79

  Alignments for each domain:
  == domain 1  score: 3.3 bits;  conditional E-value: 0.085
  TMF_TATA_bd  32 keelerleaerdeareeivklmkeneelkelkkeleelekeleelqeryetlL 84 
                  + ++ +l  ++ ++++  v++ ++  e +elk +++ +e++ +++ +++e +L
   KOO24491.1 494 EGRVRELGDSKGALQAVSVHVAARHREAEELKLRIAATEQQRAAVAKEHEWCL 546
                  55677788888888888999999999999999999999999999988888777 PP

  == domain 2  score: 8.2 bits;  conditional E-value: 0.0024
  TMF_TATA_bd  19 seirrlEgElaslkeelerleaerdeareeivklmkeneelkelkkeleelekeleelqeryetlLe 85 
                   ++r+++ El+s+ +ele l++e  +++  +++ +   +e ++l++ l++ ++e+++l++ +  lL+
   KOO24491.1 561 GTLREKQHELHSATQELEALAREVTAVQTRMASQL---DEAHALNRALSTAREEVRALKQSQALLLQ 624
                  689*****************999888887766666...67777777788888888888887777776 PP

>> Snapin_Pallidin  Snapin/Pallidin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.7   0.5     0.018        20      17      60 ..     555     597 ..     546     603 .. 0.66
   2 ?    5.2   1.7     0.025        29      11      43 ..     601     633 ..     598     642 .. 0.87

  Alignments for each domain:
  == domain 1  score: 5.7 bits;  conditional E-value: 0.018
  Snapin_Pallidin  17 eldeklkelrqsQeeLleqldrlnekLkeleeaqeaevlpdlke 60 
                      ++d+    lr++Q eL++  ++l +  +e+  +q   + ++l+e
       KOO24491.1 555 QCDSYAGTLREKQHELHSATQELEALAREVTAVQT-RMASQLDE 597
                      56666677777777777666666666666666665.55555554 PP

  == domain 2  score: 5.2 bits;  conditional E-value: 0.025
  Snapin_Pallidin  11 lepkldeldeklkelrqsQeeLleqldrlnekL 43 
                      l  +l + +e++++l+qsQ  Ll+q + +++++
       KOO24491.1 601 LNRALSTAREEVRALKQSQALLLQQAHVESKQV 633
                      566788999****************99998876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (820 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1149  (0.0640861); expected 358.6 (0.02)
Passed bias filter:                      620  (0.0345808); expected 358.6 (0.02)
Passed Vit filter:                       107  (0.00596798); expected 17.9 (0.001)
Passed Fwd filter:                        25  (0.00139439); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              16  [number of targets reported over threshold]
# CPU time: 0.90u 0.32s 00:00:01.22 Elapsed: 00:00:00.47
# Mc/sec: 5215.23
//
Query:       KOO24492.1  [L=336]
Description: hypothetical protein Ctob_009768 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (336 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       334  (0.018629); expected 358.6 (0.02)
Passed bias filter:                      214  (0.011936); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.43u 0.26s 00:00:00.69 Elapsed: 00:00:00.42
# Mc/sec: 2409.21
//
Query:       KOO24493.1  [L=1149]
Description: u-box domain-containing protein 4-like protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.7e-68  224.7  60.0    9.2e-06   25.5   0.5   22.9 23  Arm              Armadillo/beta-catenin-like repeat
    2.7e-16   59.4  11.9    0.00033   20.6   0.4    9.8 11  Atx10homo_assoc  Spinocerebellar ataxia type 10 protein domai
    1.3e-07   31.3  23.9      0.041   13.3   0.1    7.3  8  DUF5578          Family of unknown function (DUF5578)
    3.7e-05   24.1  50.3          1    9.9   0.4   11.8 11  HEAT_EZ          HEAT-like repeat
    0.00022   20.6   1.2        1.8    7.8   0.0    4.4  4  V-ATPase_H_N     V-ATPase subunit H
    0.00029   20.4  12.6         10    5.5   0.0    7.3  9  Arm_2            Armadillo-like
    0.00062   18.4   7.9        1.1    7.7   0.0    5.7  7  Adaptin_N        Adaptin N terminal region
  ------ inclusion threshold ------
       0.82    9.6   4.4        2.6    8.0   0.5    3.7  5  UNC45-central    Myosin-binding striated muscle assembly cent
        6.1    7.3  56.7      0.073   13.5   0.4    9.7 12  HEAT_2           HEAT repeats
          9    6.9  33.3        5.6    7.5   0.1   10.2 13  HEAT             HEAT repeat


Domain annotation for each model (and alignments):
>> Arm  Armadillo/beta-catenin-like repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.6   0.2     0.041        73      27      41 .]       4      18 ..       1      18 [. 0.83
   2 !   10.5   0.1   0.00028      0.51       7      41 .]      26      60 ..      23      60 .. 0.91
   3 !   18.1   0.1   1.1e-06     0.002       1      41 []      62     103 ..      62     103 .. 0.93
   4 ?    1.6   0.0      0.17   3.1e+02       4      28 ..     108     133 ..     105     135 .. 0.77
   5 ?   -0.3   0.2      0.71   1.3e+03      28      40 ..     150     162 ..     145     163 .. 0.85
   6 ?    3.9   0.0     0.034        61       4      37 ..     168     201 ..     165     204 .. 0.76
   7 ?   -0.7   0.1       0.9   1.6e+03      16      39 ..     217     240 ..     211     242 .. 0.87
   8 ?    0.4   0.1      0.42   7.4e+02      23      40 ..     253     270 ..     249     271 .. 0.89
   9 !   11.4   0.0   0.00015      0.27       4      35 ..     283     315 ..     281     320 .. 0.78
  10 !   10.6   0.0   0.00026      0.46       2      37 ..     323     358 ..     322     362 .. 0.85
  11 !    9.3   0.1   0.00067       1.2      13      41 .]     370     402 ..     364     402 .. 0.88
  12 !   24.8   0.0   8.9e-09   1.6e-05       2      40 ..     405     443 ..     404     444 .. 0.94
  13 ?    5.1   0.2     0.014        25       7      36 ..     452     485 ..     446     486 .. 0.84
  14 !   25.5   0.5   5.1e-09   9.2e-06       4      40 ..     500     536 ..     497     537 .. 0.91
  15 !   15.3   0.0   8.3e-06     0.015       1      39 [.     539     577 ..     539     579 .. 0.94
  16 !   14.2   0.1   1.9e-05     0.034       1      41 []     581     622 ..     581     622 .. 0.95
  17 ?    4.5   0.0     0.021        38       1      22 [.     666     687 ..     666     713 .. 0.78
  18 !   22.6   0.1   4.3e-08   7.8e-05       1      33 [.     716     748 ..     716     750 .. 0.93
  19 !   11.5   0.1   0.00014      0.24       2      32 ..     780     812 ..     779     814 .. 0.89
  20 !   11.6   0.0   0.00012      0.22       2      30 ..     842     870 ..     841     871 .. 0.88
  21 !   19.8   0.0   3.2e-07   0.00058       5      41 .]     877     913 ..     875     913 .. 0.93
  22 !   20.1   0.2   2.7e-07   0.00048       5      40 ..     918     952 ..     915     953 .. 0.95
  23 ?    2.0   0.0      0.13   2.4e+02       5      17 ..     958     970 ..     955     990 .. 0.86

  Alignments for each domain:
  == domain 1  score: 3.6 bits;  conditional E-value: 0.041
                HHHHHHHHHHHHHTT CS
         Arm 27 evqeeAawALsNLaa 41
                + q  Aa+AL+NLa+
  KOO24493.1  4 QGQVHAAAALANLAR 18
                66889********97 PP

  == domain 2  score: 10.5 bits;  conditional E-value: 0.00028
                HHHHTTHHHHHHHHTTTSSHHHHHHHHHHHHHHTT CS
         Arm  7 avieaGavppLvrLLssedeevqeeAawALsNLaa 41
                +++ aG++ p +++L+s++++ q +Aa+ L++La+
  KOO24493.1 26 QIVMAGGILPPLQMLTSKSPQAQAQAAGILAHLAR 60
                578889999999*********************97 PP

  == domain 3  score: 18.1 bits;  conditional E-value: 1.1e-06
                 SHHHHHHHHHTTHHHHHHHHTT.TSSHHHHHHHHHHHHHHTT CS
         Arm   1 nsenkdavieaGavppLvrLLs.sedeevqeeAawALsNLaa 41 
                 n en d + + +a++pLv+LL+ +   evqe Aa A++ L++
  KOO24493.1  62 NRENQDKIASTNAMKPLVDLLDhTCPLEVQEYAALAITELCR 103
                 67999*****************77788**************7 PP

  == domain 4  score: 1.6 bits;  conditional E-value: 0.17
                 HHHHHHHTTHHHHHHHHTT.TSSHHH CS
         Arm   4 nkdavieaGavppLvrLLs.sedeev 28 
                 n  a   +G +  Lv+L++ s+d ++
  KOO24493.1 108 NQTAAATLGSIALLVELMKtSKDAKM 133
                 5556666789999******9999876 PP

  == domain 5  score: -0.3 bits;  conditional E-value: 0.71
                 HHHHHHHHHHHHT CS
         Arm  28 vqeeAawALsNLa 40 
                 v+ eAa+A++ ++
  KOO24493.1 150 VKAEAAGAIWVIS 162
                 889*******887 PP

  == domain 6  score: 3.9 bits;  conditional E-value: 0.034
                 HHHHHHHTTHHHHHHHHTTTSSHHHHHHHHHHHH CS
         Arm   4 nkdavieaGavppLvrLLssedeevqeeAawALs 37 
                 nk av ea ++pp v+LL s+ e+    Aa AL+
  KOO24493.1 168 NKLAVEEARGIPPTVALLASGYERAENHAANALA 201
                 666677999**********988876666666665 PP

  == domain 7  score: -0.7 bits;  conditional E-value: 0.9
                 HHHHHTTTSSHHHHHHHHHHHHHH CS
         Arm  16 pLvrLLssedeevqeeAawALsNL 39 
                  Lv++L  + ++ + +Aa+ L+ L
  KOO24493.1 217 LLVAMLGAGTPKAKLNAAASLWRL 240
                 6999999999999********988 PP

  == domain 8  score: 0.4 bits;  conditional E-value: 0.42
                 TSSHHHHHHHHHHHHHHT CS
         Arm  23 sedeevqeeAawALsNLa 40 
                 s+d+++q+ Aa+AL+ La
  KOO24493.1 253 STDPMTQKFAAAALARLA 270
                 89************9998 PP

  == domain 9  score: 11.4 bits;  conditional E-value: 0.00015
                 HHHHHHHTTHHHHHHHHTT..TSSHHHHHHHHHH CS
         Arm   4 nkdavieaGavppLvrLLs..sedeevqeeAawA 35 
                 n +++ +aGa+p Lv+LL+  s+d   qee+a+A
  KOO24493.1 283 NARTIAKAGAIPSLVTLLEglSGDA-AQEESAGA 315
                 7889***************966664.45555555 PP

  == domain 10  score: 10.6 bits;  conditional E-value: 0.00026
                 HHHHHHHHHTTHHHHHHHHTTTSSHHHHHHHHHHHH CS
         Arm   2 senkdavieaGavppLvrLLssedeevqeeAawALs 37 
                 ++n+  + eaG++ pLv +L s++ + ++ A +AL 
  KOO24493.1 323 DGNRTSITEAGGIGPLVMMLGSKNLQARRHAEAALV 358
                 78999999****************999998866665 PP

  == domain 11  score: 9.3 bits;  conditional E-value: 0.00067
                 HHHHHHHHTT....TSSHHHHHHHHHHHHHHTT CS
         Arm  13 avppLvrLLs....sedeevqeeAawALsNLaa 41 
                 +++ Lv +L+    ++ ++ qe+Aa+AL+NLa+
  KOO24493.1 370 IIEKLVGMLKvksvDKADNRQEQAAAALANLAS 402
                 57888899999998999999***********96 PP

  == domain 12  score: 24.8 bits;  conditional E-value: 8.9e-09
                 HHHHHHHHHTTHHHHHHHHTTTSSHHHHHHHHHHHHHHT CS
         Arm   2 senkdavieaGavppLvrLLssedeevqeeAawALsNLa 40 
                  en+  +++aG+++pL++LL+s++ + +e+++ A++ La
  KOO24493.1 405 AENRNSIVDAGGIEPLLALLESPSSKAKENSVKAIAKLA 443
                 699*******************************99886 PP

  == domain 13  score: 5.1 bits;  conditional E-value: 0.014
                 HHHHTTHHHHHHHHTT....TSSHHHHHHHHHHH CS
         Arm   7 avieaGavppLvrLLs....sedeevqeeAawAL 36 
                 a+ +aG+vp   + L     + +e++q + ++AL
  KOO24493.1 452 AIQKAGGVPLIANVLLscsaNVKEMMQAATLCAL 485
                 566*************999999999999999998 PP

  == domain 14  score: 25.5 bits;  conditional E-value: 5.1e-09
                 HHHHHHHTTHHHHHHHHTTTSSHHHHHHHHHHHHHHT CS
         Arm   4 nkdavieaGavppLvrLLssedeevqeeAawALsNLa 40 
                    a+ eaGav+pLv +L s ++e+q eAa+A++ L+
  KOO24493.1 500 IALALAEAGAVQPLVLMLGSSSVELQSEAAGAIAQLS 536
                 567899***************************9987 PP

  == domain 15  score: 15.3 bits;  conditional E-value: 8.3e-06
                 SHHHHHHHHHTTHHHHHHHHTTTSSHHHHHHHHHHHHHH CS
         Arm   1 nsenkdavieaGavppLvrLLssedeevqeeAawALsNL 39 
                 ++en  a+ + Ga+ pL +L + +  ev+e++a+AL+ L
  KOO24493.1 539 SPENQAAIARTGAITPLTALVREGTAEVKEQSAAALWAL 577
                 699*********************************955 PP

  == domain 16  score: 14.2 bits;  conditional E-value: 1.9e-05
                 SHHHHHHHHHTTHHHHHHHHTT.TSSHHHHHHHHHHHHHHTT CS
         Arm   1 nsenkdavieaGavppLvrLLs.sedeevqeeAawALsNLaa 41 
                 ns+nk ++ ++G+++pLv LL   ++++  e +++AL+ L++
  KOO24493.1 581 NSGNKATIAKLGGIEPLVILLVgGGSDNSWEMSVGALCSLCS 622
                 789*********************************999996 PP

  == domain 17  score: 4.5 bits;  conditional E-value: 0.021
                 SHHHHHHHHHTTHHHHHHHHTT CS
         Arm   1 nsenkdavieaGavppLvrLLs 22 
                 +s n  a+ +aG+vp+ ++ Ls
  KOO24493.1 666 SSANQVAIAKAGGVPAVITWLS 687
                 578999**********987666 PP

  == domain 18  score: 22.6 bits;  conditional E-value: 4.3e-08
                 SHHHHHHHHHTTHHHHHHHHTTTSSHHHHHHHH CS
         Arm   1 nsenkdavieaGavppLvrLLssedeevqeeAa 33 
                 n++   +++++ ++ppL++LL+s++ ++q +A+
  KOO24493.1 716 NDPLQSLIVRSHGIPPLIDLLTSGSLSTQAAAL 748
                 6788999***********************998 PP

  == domain 19  score: 11.5 bits;  conditional E-value: 0.00014
                 HHHHHHHHHTTHHHHHHHHTT..TSSHHHHHHH CS
         Arm   2 senkdavieaGavppLvrLLs..sedeevqeeA 32 
                 s+n+ a++eaGa+++Lv  +   s+  +vq  A
  KOO24493.1 780 SDNITAIVEAGAIERLVMQIAlkSPQHRVQVTA 812
                 89****************999999988888765 PP

  == domain 20  score: 11.6 bits;  conditional E-value: 0.00012
                 HHHHHHHHHTTHHHHHHHHTTTSSHHHHH CS
         Arm   2 senkdavieaGavppLvrLLssedeevqe 30 
                 s+n+++v  aG+++++v+LL+++  e qe
  KOO24493.1 842 SDNRMTVQMAGGIDRFVALLKDGTLEAQE 870
                 89*******************88777776 PP

  == domain 21  score: 19.8 bits;  conditional E-value: 3.2e-07
                 HHHHHHTTHHHHHHHHTTTSSHHHHHHHHHHHHHHTT CS
         Arm   5 kdavieaGavppLvrLLssedeevqeeAawALsNLaa 41 
                 k  ++++G++++Lv+LL++++   q+ A +AL+ +++
  KOO24493.1 877 KSSIVSSGGIDHLVTLLKTGSAIAQKHASCALWGISS 913
                 6679*****************************9985 PP

  == domain 22  score: 20.1 bits;  conditional E-value: 2.7e-07
                 HHHHHHTTHHHHHHHHTTTSSHHHHHHHHHHHHHHT CS
         Arm   5 kdavieaGavppLvrLLssedeevqeeAawALsNLa 40 
                  +av++aGav pL++LL+  +++ q  Aa+AL+NLa
  KOO24493.1 918 QKAVVKAGAVLPLIELLT-SNPKAQGYAAAALCNLA 952
                 579***************.****************8 PP

  == domain 23  score: 2.0 bits;  conditional E-value: 0.13
                 HHHHHHTTHHHHH CS
         Arm   5 kdavieaGavppL 17 
                 + ++ie+G+v+pL
  KOO24493.1 958 RNELIEQGGVDPL 970
                 6689********9 PP

>> Atx10homo_assoc  Spinocerebellar ataxia type 10 protein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.0   0.1   8.8e-05      0.16       7      74 ..      11      76 ..       6      85 .. 0.87
   2 !   20.6   0.4   1.8e-07   0.00033       8      71 ..      54     116 ..      47     129 .. 0.89
   3 ?    0.9   0.0      0.27   4.8e+02       7      24 ..     198     215 ..     157     221 .. 0.71
   4 ?    2.8   0.0     0.065   1.2e+02       7      72 ..     198     256 ..     192     273 .. 0.68
   5 ?    3.9   0.0     0.031        55      47      67 ..     391     411 ..     357     425 .. 0.61
   6 !   13.5   0.1     3e-05     0.054       2      49 ..     432     480 ..     431     528 .. 0.69
   7 ?    5.4   0.0      0.01        18       8      70 ..     531     591 ..     524     599 .. 0.82
   8 !    8.1   0.0    0.0015       2.7       8      70 ..     573     634 ..     566     640 .. 0.80
   9 ?    1.9   0.0      0.13   2.3e+02       5      33 ..     655     683 ..     651     687 .. 0.85
  10 ?   -2.0   0.0       2.1   3.8e+03      15      71 ..     715     773 ..     706     786 .. 0.56
  11 ?   -0.8   0.0      0.88   1.6e+03      36      68 ..     931     963 ..     915     968 .. 0.68

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 8.8e-05
  Atx10homo_assoc  7 rllgnlvyknkevqdkvreldgleliLsqcniDdnnPfirewailairnLlegneenqelvaeLeakg 74
                     + l+nl+  n ++q++++  +g+   L+     ++ P  + +a   + +L   n+enq+ +a+ +a +
       KOO24493.1 11 AALANLARGNLDIQNQIVMAGGILPPLQMLT--SKSPQAQAQAAGILAHLARYNRENQDKIASTNAMK 76
                     579************************9876..567888888888888**************998766 PP

  == domain 2  score: 20.6 bits;  conditional E-value: 1.8e-07
  Atx10homo_assoc   8 llgnlvyknkevqdkvreldgleliLsqcniDdnnPf.irewailairnLlegneenqelvaeLe 71 
                      +l++l+  n+e+qdk+ + ++++ + +   +D+  P+ ++e+a lai  L+ +n++nq   a+L 
       KOO24493.1  54 ILAHLARYNRENQDKIASTNAMKPLVDL--LDHTCPLeVQEYAALAITELCRDNNANQTAAATLG 116
                      89999********************995..79999*9459******************9988875 PP

  == domain 3  score: 0.9 bits;  conditional E-value: 0.27
  Atx10homo_assoc   7 rllgnlvyknkevqdkvr 24 
                      + l++l +kn+++q+++ 
       KOO24493.1 198 NALASLGFKNTKNQEQIT 215
                      345555566666665554 PP

  == domain 4  score: 2.8 bits;  conditional E-value: 0.065
  Atx10homo_assoc   7 rllgnlvyknkevqdkvreldgleliLsqcniDdnnPfirewailairnLlegneenqelvaeLea 72 
                      + l++l +kn+++q+++  l  l ++L      +  P  +  a   +  L+++n+  q++va+  +
       KOO24493.1 198 NALASLGFKNTKNQEQITGL--LVAMLG-----AGTPKAKLNAAASLWRLVHENPTDQAVVASTDP 256
                      56777888888888887543..444443.....456777777777777788888888888877665 PP

  == domain 5  score: 3.9 bits;  conditional E-value: 0.031
  Atx10homo_assoc  47 ewailairnLlegneenqelv 67 
                      e+a  a+ nL  +++en++ +
       KOO24493.1 391 EQAAAALANLASDSAENRNSI 411
                      445555555555555555544 PP

  == domain 6  score: 13.5 bits;  conditional E-value: 3e-05
  Atx10homo_assoc   2 Krelvrllgnlvyknkevqdkvreldgleli...LsqcniDdnnPfirewa 49 
                      K++ v+ ++ l+yk+k++q  +++ +g++li   L +c+ + +   + + a
       KOO24493.1 432 KENSVKAIAKLAYKSKDIQTAIQKAGGVPLIanvLLSCSANVK--EMMQAA 480
                      8899***********************9987222444444333..233333 PP

  == domain 7  score: 5.4 bits;  conditional E-value: 0.01
  Atx10homo_assoc   8 llgnlvyknkevqdkvreldgleliLsqcniDdnnPfirewailairnLlegneenqelvaeL 70 
                       +++l+ +++e+q  + + ++++ +     + +    ++e++  a+  L  +n+ n++ +a+L
       KOO24493.1 531 AIAQLSLNSPENQAAIARTGAITPLTAL--VREGTAEVKEQSAAALWALSYENSGNKATIAKL 591
                      6899999999999999999999986443..44556668999999**************99998 PP

  == domain 8  score: 8.1 bits;  conditional E-value: 0.0015
  Atx10homo_assoc   8 llgnlvyknkevqdkvreldgleliLsqcniDdnnPfirewailairnLlegneenqelvaeL 70 
                       l  l+y+n+ ++ ++ +l+g+e +    +     +   e ++ a+  L+ + +en+e +a+L
       KOO24493.1 573 ALWALSYENSGNKATIAKLGGIEPLVILLVGG-GSDNSWEMSVGALCSLCSKHAENRENIAKL 634
                      566799***************99866554443.44445799********************98 PP

  == domain 9  score: 1.9 bits;  conditional E-value: 0.13
  Atx10homo_assoc   5 lvrllgnlvyknkevqdkvreldgleliL 33 
                      +++ ++ l+ +++++q  + + +g+++++
       KOO24493.1 655 ILSSVSKLCLSSSANQVAIAKAGGVPAVI 683
                      56678899****************99987 PP

  == domain 10  score: -2.0 bits;  conditional E-value: 2.1
  Atx10homo_assoc  15 knkevqdkvreldgleliLsqcniDdnnPfirewaila..irnLlegneenqelvaeLe 71 
                       n   q+ +++ +g++ +++     +        ai +  +  L  g++e+qe v ++ 
       KOO24493.1 715 GNDPLQSLIVRSHGIPPLIDLLTSGSLSTQAAALAIATglVGLLGTGTAEAQEQVTQML 773
                      56666777777777777766544444333333333332213444556677777777665 PP

  == domain 11  score: -0.8 bits;  conditional E-value: 0.88
  Atx10homo_assoc  36 cniDdnnPfirewailairnLlegneenqelva 68 
                      +++  +nP  + +a  a+ nL ++  +  el++
       KOO24493.1 931 IELLTSNPKAQGYAAAALCNLANEADARNELIE 963
                      444556777777777787777777777666665 PP

>> DUF5578  Family of unknown function (DUF5578)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.1   0.4    0.0018       3.2     165     253 ..       6     105 ..       2     123 .. 0.70
   2 !   13.3   0.1   2.3e-05     0.041     116     217 ..     145     245 ..     141     273 .. 0.80
   3 !    5.1   0.6    0.0075        13     101     224 ..     331     454 ..     326     494 .. 0.51
   4 ?    0.3   0.0      0.21   3.9e+02     219     250 ..     505     536 ..     485     552 .. 0.82
   5 ?   -1.8   0.0      0.89   1.6e+03     196     250 ..     604     660 ..     563     673 .. 0.80
   6 !    9.8   0.1   0.00026      0.47     122     251 ..     702     838 ..     694     862 .. 0.75
   7 !    6.7   0.0    0.0023       4.1     148     251 ..     885     994 ..     872    1009 .. 0.74
   8 ?   -2.8   0.4       1.9   3.4e+03     152     171 ..    1093    1112 ..    1092    1118 .. 0.86

  Alignments for each domain:
  == domain 1  score: 7.1 bits;  conditional E-value: 0.0018
     DUF5578 165 qeeaqklleslaegnPkyqkqvykg..l...iallacsspkaqqlalqtlrvvqeivke.....akpsivepllelL.kslhlevqyeaielikelmst 252
                 q +a + l +la+gn + q+q+ ++  +   + +l+++sp+aq  a+  l  + +  +e     a ++ ++pl++lL ++  levq  a   i el + 
  KOO24493.1   6 QVHAAAALANLARGNLDIQNQIVMAggIlppLQMLTSKSPQAQAQAAGILAHLARYNREnqdkiASTNAMKPLVDLLdHTCPLEVQEYAALAITELCRD 104
                 5667788999***********98743332335789999*****9888776665544433111126688899*****9447789***9999999999865 PP

     DUF5578 253 e 253
                 +
  KOO24493.1 105 N 105
                 3 PP

  == domain 2  score: 13.3 bits;  conditional E-value: 2.3e-05
     DUF5578 116 qlkeedkaealkllqlvanaGrkyKEliCEsygvravaeclakskseetqeeaqklleslaegnPkyqkqvykgliallacsspkaqqlalqtlrvvqe 214
                 q+ ++ kaea   + ++++     K  + E+ g+     +la s  e+++++a + l sl+  n k q+q+   l+a+l + +pka+  a+ +l  + +
  KOO24493.1 145 QAANAVKAEAAGAIWVISHEHESNKLAVEEARGIPPTVALLA-SGYERAENHAANALASLGFKNTKNQEQITGLLVAMLGAGTPKAKLNAAASLWRLVH 242
                 666777888888888888888888888888888888887777.66799999************************************999888855544 PP

     DUF5578 215 ivk 217
                   +
  KOO24493.1 243 ENP 245
                 443 PP

  == domain 3  score: 5.1 bits;  conditional E-value: 0.0075
     DUF5578 101 EiGGvltlleilglkqlkeedkaealkllqlvanaGrkyKEliCEs.ygvravaec.lakskseetqeeaqklleslaeg.nPkyqkqvykgliallac 196
                 E GG+  l+ +lg k+l+ + +aea  +   +  a r    +i E   g+ +v  +  a  ++e++ ++  +l +  ae+ n        + l+all++
  KOO24493.1 331 EAGGIGPLVMMLGSKNLQARRHAEAALVRLSIEAANRV---IIIEKlVGMLKVKSVdKADNRQEQAAAALANLASDSAENrNSIVDAGGIEPLLALLES 426
                 66666666666666666666666666555555555543...3333202333322210123333333333333333322221223333344557777777 PP

     DUF5578 197 sspkaqqlalqtlrvvqeivkeakpsiv 224
                  s ka+  +++++  +  + k+ +++i 
  KOO24493.1 427 PSSKAKENSVKAIAKLAYKSKDIQTAIQ 454
                 7777777766666665555555444443 PP

  == domain 4  score: 0.3 bits;  conditional E-value: 0.21
     DUF5578 219 akpsivepllelLkslhlevqyeaielikelm 250
                 a+   v+pl+ +L s  +e+q+ea   i +l 
  KOO24493.1 505 AEAGAVQPLVLMLGSSSVELQSEAAGAIAQLS 536
                 6677899*****************99999886 PP

  == domain 5  score: -1.8 bits;  conditional E-value: 0.89
     DUF5578 196 csspkaqqlalqtlrvvqeivkeakpsivepllelLkslhlevqye..aielikelm 250
                   s ++  +++ +l+++ ++  e + +i + ++  L s    vq++  a+++++++ 
  KOO24493.1 604 GGSDNSWEMSVGALCSLCSKHAENRENIAKLIIGRLGSRIATVQTQngAVRILSSVS 660
                 457788889999999999999999999999999999998877776544788877765 PP

  == domain 6  score: 9.8 bits;  conditional E-value: 0.00026
     DUF5578 122 kaealkllqlvanaGrkyKEliCEsygvravaeclak...skseetqeeaqklleslaegnPkyqkqvykgliallacsspkaqqlalqtlr..vvqei 215
                 + ea + l  +a +    + li  s+g+  + ++l++   s+++++ + a  l+  l++g  + q+qv + li   + s   +  + + +++  v+q +
  KOO24493.1 702 QCEAAQALLSMATGNDPLQSLIVRSHGIPPLIDLLTSgslSTQAAALAIATGLVGLLGTGTAEAQEQVTQMLIKFASHSDNITAIVEAGAIErlVMQIA 800
                 557778888888888889999********9999996422244555566678899999***************998775444444445555542233333 PP

     DUF5578 216 v..keakpsivepllelLkslhlevqyeaielikelms 251
                 +  ++ + ++  +l++lL   + ev++ a + +k++++
  KOO24493.1 801 LksPQHRVQVTAQLIALLGASEAEVRQRAWNALKDMAA 838
                 31144457788999*****************9999875 PP

  == domain 7  score: 6.7 bits;  conditional E-value: 0.0023
     DUF5578 148 gvravaeclakskseetqeeaqklleslaegnPkyqkqvykg.....liallacsspkaqqlalqtlrvvqeivkeak....psivepllelLkslhle 237
                 g+ ++   l k+ s+ +q++a+  l+ ++ + P+yqk v k+     li ll+ s pkaq +a+ +l+ + +  ++ +    +  v+pl ++ +  ++ 
  KOO24493.1 885 GIDHLVT-LLKTGSAIAQKHASCALWGIS-SEPSYQKAVVKAgavlpLIELLT-SNPKAQGYAAAALCNLANEADARNelieQGGVDPLTAISHGPESW 980
                 5555544.557889999********9986.68*******99655555677776.78***********99988877665222245688888888888888 PP

     DUF5578 238 vqyeaielikelms 251
                 ++++a+ +++ l  
  KOO24493.1 981 LRTQAVGILQRLNI 994
                 88888888888864 PP

  == domain 8  score: -2.8 bits;  conditional E-value: 1.9
     DUF5578  152 vaeclakskseetqeeaqkl 171 
                  vae lak ks+++ ++aq++
  KOO24493.1 1093 VAEALAKHKSQQAAKAAQAF 1112
                  79***********9999987 PP

>> HEAT_EZ  HEAT-like repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.9   1.5   0.00059       1.1       5      54 ..       7      57 ..       6      58 .. 0.92
   2 !    8.0   0.0    0.0022         4      26      55 .]      71     101 ..      60     101 .. 0.87
   3 ?   -3.5   0.0       9.1   1.6e+04       6      26 ..     156     182 ..     153     185 .. 0.73
   4 ?    1.4   0.2      0.27   4.8e+02       5      49 ..     194     234 ..     190     238 .. 0.78
   5 ?    2.2   0.7      0.15   2.7e+02       3      48 ..     258     315 ..     256     320 .. 0.68
   6 !    9.9   0.4   0.00058         1       4      55 .]     390     442 ..     387     442 .. 0.75
   7 ?    5.7   3.3     0.012        22       6      55 .]     485     535 ..     459     535 .. 0.89
   8 ?    0.4   0.0      0.55   9.9e+02      46      53 ..     571     578 ..     547     587 .. 0.64
   9 ?    3.6   0.1     0.056     1e+02       7      49 ..     705     748 ..     704     781 .. 0.85
  10 ?    3.8   0.0     0.047        85      25      52 ..     806     833 ..     799     836 .. 0.84
  11 ?    4.5   0.2     0.029        51       7      52 ..     907     948 ..     905     951 .. 0.65

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.00059
     HEAT_EZ  5 raAawaLGrlaggepellqp..lvpeilpaLlalLnddsdeVRaaAagaLgn 54
                 +Aa+aL++la g+ + +++  +   ilp+L  +L+++s+  +a+Aag L+ 
  KOO24493.1  7 VHAAAALANLARGNLDIQNQivMAGGILPPLQ-MLTSKSPQAQAQAAGILAH 57
                689********9*****999999999******.***************9976 PP

  == domain 2  score: 8.0 bits;  conditional E-value: 0.0022
     HEAT_EZ  26 vpeilpaLlalLnddsd.eVRaaAagaLgnl 55 
                  + ++++L+ lL + ++ eV+++Aa a++ l
  KOO24493.1  71 STNAMKPLVDLLDHTCPlEVQEYAALAITEL 101
                 5789**********9999*********9865 PP

  == domain 3  score: -3.5 bits;  conditional E-value: 9.1
     HEAT_EZ   6 aAawaLGr......laggepellqplv 26 
                 +A+w+++       la++e++ ++p v
  KOO24493.1 156 GAIWVISHehesnkLAVEEARGIPPTV 182
                 789999667777788888887777655 PP

  == domain 4  score: 1.4 bits;  conditional E-value: 0.27
     HEAT_EZ   5 raAawaLGrlaggepellqplvpeilpaLlalLnddsdeVRaaAa 49 
                 ++Aa+aL++l + +   ++    +i  +L+a+L    ++ + +Aa
  KOO24493.1 194 NHAANALASLGFKNTKNQE----QITGLLVAMLGAGTPKAKLNAA 234
                 5789999888899999999....9999999999776666655555 PP

  == domain 5  score: 2.2 bits;  conditional E-value: 0.15
     HEAT_EZ   3 vRraAawaLGr..........laggepellqp..lvpeilpaLlalLnddsdeVRaaA 48 
                  +  Aa+aL+r           a ++++++++  ++p ++ +L  l  d  +e  a A
  KOO24493.1 258 TQKFAAAALARlataigdkdpFAKVNARTIAKagAIPSLVTLLEGLSGDAAQEESAGA 315
                 6778999999988888888887778888866667899999888855544333334444 PP

  == domain 6  score: 9.9 bits;  conditional E-value: 0.00058
     HEAT_EZ   4 RraAawaLGr.....laggepellqplvpeilpaLlalLnddsdeVRaaAagaLgnl 55 
                 ++ Aa+aL++     +++ ++  ++      + +LlalL+++s++ +++++ a+++l
  KOO24493.1 390 QEQAAAALANlasdsAENRNSIVDA----GGIEPLLALLESPSSKAKENSVKAIAKL 442
                 6778888877633555555555555....889999999999999*********9886 PP

  == domain 7  score: 5.7 bits;  conditional E-value: 0.012
     HEAT_EZ   6 aAawaLGrlaggepel.lqplvpeilpaLlalLnddsdeVRaaAagaLgnl 55 
                  Aa+a++ l +g++e  l+++   ++ +L+ +L ++s e +  Aaga+++l
  KOO24493.1 485 LAANAVSQLSEGNKEIaLALAEAGAVQPLVLMLGSSSVELQSEAAGAIAQL 535
                 46667766999999999999**************9999**********997 PP

  == domain 8  score: 0.4 bits;  conditional E-value: 0.55
     HEAT_EZ  46 aaAagaLg 53 
                 aaA++aL+
  KOO24493.1 571 AAALWALS 578
                 45555554 PP

  == domain 9  score: 3.6 bits;  conditional E-value: 0.056
     HEAT_EZ   7 AawaLGrlaggepellqp.lvpeilpaLlalLnddsdeVRaaAa 49 
                 Aa aL ++a g+++l+++ + +  +p+L+ lL++ s +++aaA+
  KOO24493.1 705 AAQALLSMATGNDPLQSLiVRSHGIPPLIDLLTSGSLSTQAAAL 748
                 55555457788888888888888899999999999999999986 PP

  == domain 10  score: 3.8 bits;  conditional E-value: 0.047
     HEAT_EZ  25 lvpeilpaLlalLnddsdeVRaaAagaL 52 
                 +  ++ ++L+alL  +++eVR+ A  aL
  KOO24493.1 806 HRVQVTAQLIALLGASEAEVRQRAWNAL 833
                 5568999**************9986655 PP

  == domain 11  score: 4.5 bits;  conditional E-value: 0.029
     HEAT_EZ   7 AawaLGr.laggepellqplvpeilpaLlalLnddsdeVRaaAagaL 52 
                 A+w++++ +  + +   +++v  ++ +L      ++++ +++Aa aL
  KOO24493.1 907 ALWGISSePSYQKAVVKAGAVLPLIELLT-----SNPKAQGYAAAAL 948
                 89999544444444444545555555555.....7999999999988 PP

>> V-ATPase_H_N  V-ATPase subunit H
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.8   0.0   0.00099       1.8     108     201 ..      35     138 ..      24     188 .. 0.74
   2 ?    2.4   0.2     0.043        78     122     194 ..     391     461 ..     347     590 .. 0.60
   3 ?    3.4   0.0     0.021        37     150     211 ..     655     743 ..     617     773 .. 0.67
   4 ?    1.4   0.0     0.085   1.5e+02     105     199 ..     769     934 ..     757     975 .. 0.46

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 0.00099
  V-ATPase_H_N 108 pflkllnrqddfivllalrllakllvqgkkksnklv.esaLnrllqlLssqlssstnevieiavrllqellrtkeyRelfve.adgvstlisilr.. 200
                   p l++l+++  + + +a+ +la l++++++++ k+   +a++ l++lL ++      ev+e a+ ++ el r ++  +++      + +l+++++  
    KOO24493.1  35 PPLQMLTSKSPQAQAQAAGILAHLARYNRENQDKIAsTNAMKPLVDLLDHTCPL---EVQEYAALAITELCRDNNANQTAAAtLGSIALLVELMKts 128
                   66899999999***********************888999999***99986655...6778888888888888888887777666777777777555 PP

  V-ATPase_H_N 201 .........s 201
                             
    KOO24493.1 129 kdakmtsspR 138
                   5555554442 PP

  == domain 2  score: 2.4 bits;  conditional E-value: 0.043
  V-ATPase_H_N 122 llalrllakllvqgkkksnklv.esaLnrllqlLss.qlssstnevieiavrllqell.rtkeyRelfveadgvst 194
                   ++a+  la+l++ ++++ n +v    ++ ll+lL+s + ++++n      v+++++l+ ++k++  ++ +a gv++
    KOO24493.1 391 EQAAAALANLASDSAENRNSIVdAGGIEPLLALLESpSSKAKEN-----SVKAIAKLAyKSKDIQTAIQKAGGVPL 461
                   34444444444444444444443333444444444321111111.....112222222022233333333333333 PP

  == domain 3  score: 3.4 bits;  conditional E-value: 0.021
  V-ATPase_H_N 150 llqlLss.qlssstnevi...............................eiavrllqellrtkeyRelfveadgvstlisilrstvanstrvgi 211
                   +l+++s+  lsss n+v                                e a  ll++   ++ + +l+v ++g+++li++l+     s ++++
    KOO24493.1 655 ILSSVSKlCLSSSANQVAiakaggvpavitwlsgsfegtkgpvdakaqcEAAQALLSMATGNDPLQSLIVRSHGIPPLIDLLT-----SGSLST 743
                   4444444444444444444444444444444444444444555555555888999999999*******************994.....222222 PP

  == domain 4  score: 1.4 bits;  conditional E-value: 0.085
  V-ATPase_H_N 105 pwkpflkllnrqddfivllalrllakllvqgkkksnklvesaLnrllqlLssqlss......................................... 160
                   + ++++k+ +++d+++    +  + +l++q + ks++   ++  +l++lL  ++++                                         
    KOO24493.1 769 VTQMLIKFASHSDNITAIVEAGAIERLVMQIALKSPQHRVQVTAQLIALLGASEAEvrqrawnalkdmaaeggsdnrmtvqmaggidrfvallkdgt 865
                   5555555555555555555555555555555555555444455555555554433333333333333333333333333333333333333333333 PP

  V-ATPase_H_N 161 ........................................stnevieiavrllqellrtkeyRelfveadgvstlisil 199
                                                                      +l  + ++ +y +++v+a  v +li++l
    KOO24493.1 866 leaqeekagpvkssivssggidhlvtllktgsaiaqkhasC----------ALWGISSEPSYQKAVVKAGAVLPLIELL 934
                   33445555555555555555555555554433333333330..........3333333444444444444444444433 PP

>> Arm_2  Armadillo-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.1       1.2   2.1e+03     150     181 ..      47      79 ..       2     130 .. 0.57
   2 ?   -2.9   0.0       2.1   3.8e+03      33      92 ..     155     215 ..     146     236 .. 0.73
   3 !    4.7   0.2    0.0097        17      15      84 ..     372     445 ..     367     451 .. 0.77
   4 ?    4.3   0.1     0.013        24      47      81 ..     450     488 ..     443     506 .. 0.68
   5 ?    4.1   0.0     0.016        28      14      87 ..     510     583 ..     498     591 .. 0.86
   6 ?    0.3   0.0      0.22   3.9e+02     106     157 ..     696     750 ..     692     755 .. 0.79
   7 ?    2.1   0.0     0.061   1.1e+02     139     181 ..     754     796 ..     749     839 .. 0.84
   8 ?   -1.8   0.0      0.97   1.7e+03      53      90 ..     808     845 ..     805     852 .. 0.73
   9 !    5.5   0.0    0.0056        10      10      85 ..     882     958 ..     876     964 .. 0.77

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 1.2
       Arm_2 150 ikvqvLkvllnlse.Npamtrellsakvlssll 181
                  + q   +l  l+  N+++ +++ s+++++ l+
  KOO24493.1  47 AQAQAAGILAHLARyNRENQDKIASTNAMKPLV 79 
                 333333333333322333333333333333333 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 2.1
       Arm_2  33 alltlgnsaaysvnqdiirdlggitiianllsksnaevkekalnalnnls.envenqkkik 92 
                 a  +  +s  +  n+  +++  gi+   +ll +  ++ +++a nal  l  +n++nq++i 
  KOO24493.1 155 AGAIWVISHEHESNKLAVEEARGIPPTVALLASGYERAENHAANALASLGfKNTKNQEQIT 215
                 5556667788888888888888888777788888888888888888877536888888876 PP

  == domain 3  score: 4.7 bits;  conditional E-value: 0.0097
       Arm_2  15 ekllalLks.sed..pliqeialltlgnsaaysv.nqdiirdlggitiianllsksnaevkekalnalnnlsen 84 
                 ekl+ +Lk  s d     qe+a  +l+n a  s+ n++ i d ggi  + +ll +++ + ke+++ a+ +l+  
  KOO24493.1 372 EKLVGMLKVkSVDkaDNRQEQAAAALANLASDSAeNRNSIVDAGGIEPLLALLESPSSKAKENSVKAIAKLAYK 445
                 5666666531334113468899999999888765499***************************9999887655 PP

  == domain 4  score: 4.3 bits;  conditional E-value: 0.013
       Arm_2  47 qdiirdlggitiianllsksnaevke....kalnalnnl 81 
                 q  i++ gg+++ian+l + +a+vke     +l al ++
  KOO24493.1 450 QTAIQKAGGVPLIANVLLSCSANVKEmmqaATLCALAAN 488
                 6789************99888888742211456555333 PP

  == domain 5  score: 4.1 bits;  conditional E-value: 0.016
       Arm_2  14 lekllalLkssedpliqeialltlgnsaaysvnqdiirdlggitiianllsksnaevkekalnalnnlsenven 87 
                  + l+ +L ss+  l +e+a  +   s + + nq+ i   g it + +l+ +  aevke++  al +ls  +  
  KOO24493.1 510 VQPLVLMLGSSSVELQSEAAGAIAQLSLNSPENQAAIARTGAITPLTALVREGTAEVKEQSAAALWALSYENSG 583
                 677888999999999999999999999999******************************99999999865443 PP

  == domain 6  score: 0.3 bits;  conditional E-value: 0.22
       Arm_2 106 plNsevQlagLklltnlsvtne.yqhllvsy..isellsLLskGnekikvqvLkv 157
                 p+ ++ Q ++ + l ++++ n+  q l+v +  i+ l+ LL++G+  ++   L +
  KOO24493.1 696 PVDAKAQCEAAQALLSMATGNDpLQSLIVRShgIPPLIDLLTSGSLSTQAAALAI 750
                 6778889998898999988777357776654469*************99988765 PP

  == domain 7  score: 2.1 bits;  conditional E-value: 0.061
       Arm_2 139 llsLLskGnekikvqvLkvllnlseNpamtrellsakvlssll 181
                 l+ LL +G  + + qv ++l+ +++  +++  +++a +   l+
  KOO24493.1 754 LVGLLGTGTAEAQEQVTQMLIKFASHSDNITAIVEAGAIERLV 796
                 678999************************9999998876655 PP

  == domain 8  score: -1.8 bits;  conditional E-value: 0.97
       Arm_2  53 lggitiianllsksnaevkekalnalnnlsenvenqkk 90 
                 + +++ + +ll  s+aev+++a nal +++      ++
  KOO24493.1 808 VQVTAQLIALLGASEAEVRQRAWNALKDMAAEGGSDNR 845
                 55666666789999************988766555555 PP

  == domain 9  score: 5.5 bits;  conditional E-value: 0.0056
       Arm_2  10 epkelekllalLkssedpliqeialltl.gnsaaysvnqdiirdlggitiianllsksnaevk.ekalnalnnlsenv 85 
                 ++  +++l++lLk+ +  + q+ a  +l g+s   s  +++++   ++++i+ l s+++a+ +   al  l n +++ 
  KOO24493.1 882 SSGGIDHLVTLLKTGS-AIAQKHASCALwGISSEPSYQKAVVKAGAVLPLIELLTSNPKAQGYaAAALCNLANEADAR 958
                 5666789999998665.5666666666559**************************9999988567787777666554 PP

>> Adaptin_N  Adaptin N terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.5   0.2    0.0059        11     121     226 ..      38     112 ..      23     174 .. 0.54
   2 ?   -1.4   0.0      0.37   6.6e+02     359     415 ..     195     251 ..     190     270 .. 0.86
   3 ?    3.1   0.2     0.016        29     350     412 ..     384     450 ..     344     481 .. 0.64
   4 ?   -0.3   0.1      0.17   3.1e+02     383     443 ..     514     581 ..     473     673 .. 0.66
   5 ?   -1.1   0.0      0.28   5.1e+02     188     221 ..     630     664 ..     552     750 .. 0.55
   6 !    7.7   0.0   0.00061       1.1     328     406 ..     757     838 ..     735     856 .. 0.81
   7 ?    0.9   0.0     0.075   1.3e+02     391     425 ..     920     954 ..     887     998 .. 0.75

  Alignments for each domain:
  == domain 1  score: 4.5 bits;  conditional E-value: 0.0059
                 HHHT-SSHHHHHHHHHHHHHCCCCCHHCCCCC.HHHHHHHCT..T-SS..HHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCHHHHHHCS-HHHHHHHHH CS
   Adaptin_N 121 kllkdrspyvrkkAalailklykkdpdllrkq.lveeikell..sdkd..pgvvlaAvalleeikkndrlllkllpklvrrLcnllteldpwlqvkiik 214
                 ++l+++sp+ + +Aa ++++l + + + + k   ++ +k l+   d++    v+  A  +++e+ + d++                             
  KOO24493.1  38 QMLTSKSPQAQAQAAGILAHLARYNRENQDKIaSTNAMKPLVdlLDHTcpLEVQEYAALAITEL-CRDNN----------------------------- 106
                 4556666666666666666666665444444333444444432233333345666666666666.44444............................. PP

                 HHCC---SSHHH CS
   Adaptin_N 215 lltrlarqepee 226
                       ++++++
  KOO24493.1 107 ------ANQTAA 112
                 ......333333 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 0.37
                 HHHHHHHHHHHHSCCHHHHHHHHHHHHHTTXXHHHHHHHHHHHHHHHHHSTTTSTTC CS
   Adaptin_N 359 klvkaIgrlaekfatdaewvldvllellslsgesvkdeivevirdliqkvpelheei 415
                  +++a+++l+ k ++++e++   l+ +l     ++k  +++++ +l++++p+ ++ +
  KOO24493.1 195 HAANALASLGFKNTKNQEQITGLLVAMLGAGTPKAKLNAAASLWRLVHENPTDQAVV 251
                 577899999999999999999999999998889999999999999999999887654 PP

  == domain 3  score: 3.1 bits;  conditional E-value: 0.016
                 SSXXHHHHHHHHHHHHHHHHHSCCHHHHHHHH.....HHHHHTTXXHHHHHHHHHHHHHHHHHSTTTS CS
   Adaptin_N 350 evadedfksklvkaIgrlaekfatdaewvldv.....llellslsgesvkdeivevirdliqkvpelh 412
                 ++ad+   ++++ a+++la+ +a++ ++++d      ll ll++ ++++k+ +v++i +l  k ++ +
  KOO24493.1 384 DKADN-RQEQAAAALANLASDSAENRNSIVDAggiepLLALLESPSSKAKENSVKAIAKLAYKSKDIQ 450
                 33333.55556666666666666666666553333446666666666666666666666666555554 PP

  == domain 4  score: -0.3 bits;  conditional E-value: 0.17
                 HHHHTTXXHHHHHHHHHHHHHHHHHSTTTSTTC.....HHHHCCTCCG..XXSHHHHHHHHHHHHHTT CS
   Adaptin_N 383 lellslsgesvkdeivevirdliqkvpelheei.....iekLaellek..ieseearaaaiWllGeyg 443
                 + +l +s+  +++e++ +i +l  + pe+++ i     i+ L +l+ +   e++e  aaa+W l  ++
  KOO24493.1 514 VLMLGSSSVELQSEAAGAIAQLSLNSPENQAAIartgaITPLTALVREgtAEVKEQSAAALWALSYEN 581
                 55555555555666666666666666666665544444555555555555555556666666554433 PP

  == domain 5  score: -1.1 bits;  conditional E-value: 0.28
                 HHHHHHHCCHH.HHHHCS-HHHHHHHHHHHCC--- CS
   Adaptin_N 188 kllpklvrrLc.nllteldpwlqvkiiklltrlar 221
                 +++++++ rL  ++ t+ ++ + v+i++ +++l+ 
  KOO24493.1 630 NIAKLIIGRLGsRIATVQTQNGAVRILSSVSKLCL 664
                 22222222221011144444444444444444444 PP

  == domain 6  score: 7.7 bits;  conditional E-value: 0.00061
                 HCCCXXTTTHHHHHHHHHHHTTSSXXHHHHHHHHHHHHHHHHHS....CCHHHHHHHHHHHHHTTXXHHHHHHHHHHHHHHHH CS
   Adaptin_N 328 llklvdesNvkeivkeLkkyvkevadedfksklvkaIgrlaekf....atdaewvldvllellslsgesvkdeivevirdliq 406
                 ll++++++  +++ + L k++ +++d+   +  + aI rl  ++    ++   +v + l+ ll  s+  v++ ++++++d+  
  KOO24493.1 757 LLGTGTAEAQEQVTQMLIKFA-SHSDNITAIVEAGAIERLVMQIalksPQHRVQVTAQLIALLGASEAEVRQRAWNALKDMAA 838
                 5677788888999********.8889885555555666555555444499999**************************9876 PP

  == domain 7  score: 0.9 bits;  conditional E-value: 0.075
                 HHHHHHHHHHHHHHHHHSTTTSTTCHHHHCCTCCG CS
   Adaptin_N 391 esvkdeivevirdliqkvpelheeiiekLaellek 425
                   vk+ +v  +++l++ +p+ ++++++ L++l ++
  KOO24493.1 920 AVVKAGAVLPLIELLTSNPKAQGYAAAALCNLANE 954
                 45677777778888888888888888888887665 PP

>> UNC45-central  Myosin-binding striated muscle assembly central
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.1       1.1   1.9e+03      59     150 ..       8      98 ..       4     101 .. 0.63
   2 ?   -1.2   0.0      0.97   1.7e+03       6      36 ..      78     108 ..      73     132 .. 0.76
   3 ?    8.0   0.5    0.0015       2.6      66     147 ..     356     441 ..     347     443 .. 0.76
   4 ?   -1.9   0.0       1.6   2.9e+03     101     148 ..     703     748 ..     695     751 .. 0.74
   5 ?   -3.6   0.0       5.3   9.5e+03      89     130 ..     931     971 ..     920     982 .. 0.64

  Alignments for each domain:
  == domain 1  score: -1.3 bits;  conditional E-value: 1.1
                    HHHHHHHHHHHSSHHHHHHHHTSTTHHHHHHHHHHS.S-HHHHHHHHHHHHTT--S..SSSSHHHHHHHHHHHHHHHH-SSHH..HHHHHHTTS CS
  UNC45-central  59 nalsvltalFpvvpdvasalflsegflesllelveskkskkvqlaalellsaAcid..kkcrkaiaknyvewLeelvkssddeklvkalAavvL 150
                    +a ++l+ l  +  d+ +++++  g+l+ l  l  s ks + q  a+  l++ + +  ++  k  ++n ++ L +l++++   + v+ +Aa+++
     KOO24493.1   8 HAAAALANLARGNLDIQNQIVMAGGILPPLQMLT-S-KSPQAQAQAAGILAHLARYnrENQDKIASTNAMKPLVDLLDHTCPLE-VQEYAALAI 98 
                    6777778888888888888888888888777664.4.66666666666666544321145555556666666666666666443.566666665 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 0.97
                    HHHHC-T---TTHHHHHHHHHHHHH..HHHHHH CS
  UNC45-central   6 llkfldmrqpesvrslallilskll..daakee 36 
                    l++ ld++ p +v+  a l+++ l+  +  +++
     KOO24493.1  78 LVDLLDHTCPLEVQEYAALAITELCrdN--NAN 108
                    7788999999999999999999999542..322 PP

  == domain 3  score: 8.0 bits;  conditional E-value: 0.0015
                    HHHHSSHHHHHHHHTSTTHHHHHHHHHHS.S-HHHHHHHHHHHHTT--SSSSSHHHHHHH.HHHHHHHHH-SSHH.....HHHHHH CS
  UNC45-central  66 alFpvvpdvasalflsegflesllelveskkskkvqlaalellsaAcidkkcrkaiakny.vewLeelvkssddekl...vkalAa 147
                    al  ++ ++a++++  e+++ +l  +   k ++++++aa+ l + A+ +++ r+ i + + +e L +l++s + +++   vka A 
     KOO24493.1 356 ALVRLSIEAANRVIIIEKLVGMLKVKSVDKADNRQEQAAAALANLASDSAENRNSIVDAGgIEPLLALLESPSSKAKensVKAIAK 441
                    677788899999999999999998884448**********************9999886436666666666555532222555554 PP

  == domain 4  score: -1.9 bits;  conditional E-value: 1.6
                    HHHHHHHHHTT--SSSSSHHHH.HHHHHHHHHHHH-SSHH..HHHHHHT CS
  UNC45-central 101 qlaalellsaAcidkkcrkaia.knyvewLeelvkssddeklvkalAav 148
                     +aa  lls A ++ +  ++i  ++++  L +l++s + + +  a+A +
     KOO24493.1 703 CEAAQALLSMATGNDPLQSLIVrSHGIPPLIDLLTSGSLSTQ--AAA-L 748
                    566777999999999999998527889999999999888744..444.3 PP

  == domain 5  score: -3.6 bits;  conditional E-value: 5.3
                    HHHHHS.S-HHHHHHHHHHHHTT--SSSSSHHHHHHHHHHHH CS
  UNC45-central  89 lelveskkskkvqlaalellsaAcidkkcrkaiaknyvewLe 130
                    +el++s ++k +  aa+ l + A    ++ ++i + +v+ L 
     KOO24493.1 931 IELLTS-NPKAQGYAAAALCNLANEADARNELIEQGGVDPLT 971
                    444444.66666666666666666666666666666666665 PP

>> HEAT_2  HEAT repeats
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.4   4.1e-05     0.073       5      76 ..      37     130 ..      34     135 .. 0.79
   2 ?    2.2   0.2      0.13   2.4e+02      15      55 ..     194     237 ..     178     252 .. 0.75
   3 ?    2.4   0.3      0.12   2.1e+02       6      59 ..     220     270 ..     214     282 .. 0.68
   4 ?    1.3   3.3      0.25   4.4e+02       3      87 ..     298     397 ..     293     398 .. 0.71
   5 ?    7.5   0.9     0.003       5.4      14      60 ..     387     444 ..     371     457 .. 0.71
   6 ?    4.9   0.1     0.019        34       1      36 [.     417     453 ..     417     487 .. 0.72
   7 ?    3.1   5.1      0.07   1.3e+02      14      87 ..     483     574 ..     470     575 .. 0.72
   8 ?    1.8   0.2      0.18   3.2e+02      31      73 ..     727     779 ..     696     796 .. 0.54
   9 ?    5.4   1.4     0.014        25       2      87 ..     730     833 ..     729     834 .. 0.55
  10 ?    6.1   0.3    0.0084        15      30      59 ..     805     837 ..     771     862 .. 0.72
  11 ?    2.6   0.4       0.1   1.8e+02       3      65 ..     929    1001 ..     927    1009 .. 0.70
  12 ?   -2.5   0.1       3.8   6.8e+03      51      65 ..    1093    1107 ..    1092    1120 .. 0.57

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 4.1e-05
      HEAT_2   5 lqalendpdpevrraairaLg...........rignpealpaLvellededp.avRraaaeaLgai....gdpe.........alpaLkellddddd 76 
                 lq l ++++p+ +++a+  L+           +i+++ a++ Lv+ll+++ p +v++ aa a+ ++       +         ++++L el+++ +d
  KOO24493.1  37 LQML-TSKSPQAQAQAAGILAhlarynrenqdKIASTNAMKPLVDLLDHTCPlEVQEYAALAITELcrdnN--AnqtaaatlgSIALLVELMKTSKD 130
                 6888.99**************9999988888778888**************978**********9844330..122333444477888888777666 PP

  == domain 2  score: 2.2 bits;  conditional E-value: 0.13
      HEAT_2  15 evrraairaLg...rignpealpaLvellededpavRraaaeaL 55 
                 + +++a+ +Lg   +++ +++  +Lv +l    p    +aa +L
  KOO24493.1 194 NHAANALASLGfknTKNQEQITGLLVAMLGAGTPKAKLNAAASL 237
                 56788899999884455567788888888999999999999888 PP

  == domain 3  score: 2.4 bits;  conditional E-value: 0.12
      HEAT_2   6 qalendpdpevrraairaLgrignpealpaLvellededpavRraaaeaLgaig 59 
                 + l     p+ + +a+ +L r+ ++   +    ++ ++dp++++ aa aL++++
  KOO24493.1 220 AML-GAGTPKAKLNAAASLWRLVHENPTD--QAVVASTDPMTQKFAAAALARLA 270
                 444.6777778888888888887775444..44556778999999999998653 PP

  == domain 4  score: 1.3 bits;  conditional E-value: 0.25
      HEAT_2   3 aLlqalendpdpevrraairaLg.......rignpealpaLvellededpavRraaaeaLgaig...dpe..alpaLkelldddd...ddvvReaAaea 86 
                 +Ll+ l+ d+ +e  + a+ aL+       +i +   +  Lv +l +++   Rr+a  aL+++     ++   ++ L  +l+ ++    d ++e+Aa a
  KOO24493.1 298 TLLEGLSGDAAQEESAGALFALAdddgnrtSITEAGGIGPLVMMLGSKNLQARRHAEAALVRLSieaANRviIIEKLVGMLKVKSvdkADNRQEQAAAA 396
                 689999999999***********86666433444455***********************998532234422468888877664411045555566666 PP

      HEAT_2  87 L 87 
                 L
  KOO24493.1 397 L 397
                 5 PP

  == domain 5  score: 7.5 bits;  conditional E-value: 0.003
      HEAT_2  14 pevrraairaLgrignpea...........lpaLvellededpavRraaaeaLgaigd 60 
                 ++ + +a+ aL+++++++a           ++ L+ lle++++   ++ ++a+++++ 
  KOO24493.1 387 DNRQEQAAAALANLASDSAenrnsivdaggIEPLLALLESPSSKAKENSVKAIAKLAY 444
                 4445578888887777644444445555669999999999999999999999998863 PP

  == domain 6  score: 4.9 bits;  conditional E-value: 0.019
      HEAT_2   1 ldaLlqalendpdpevrraairaLg..rignpealpaL 36 
                 +++Ll++l ++p+ + + + ++a++   +++++++ a+
  KOO24493.1 417 IEPLLALL-ESPSSKAKENSVKAIAklAYKSKDIQTAI 453
                 57899999.89999999999999995534555554444 PP

  == domain 7  score: 3.1 bits;  conditional E-value: 0.07
      HEAT_2  14 pevrraairaLg........rignpealpaLvellededpavRraaaeaLgaig..dpe.........alpaLkellddddddvvReaAaeaL 87 
                 ++++++a+ +L          +++  a++ Lv +l +++ + + +aa a++++   +pe         a+  L++l+++ + + v+e++a aL
  KOO24493.1 483 CALAANAVSQLSegnkeialALAEAGAVQPLVLMLGSSSVELQSEAAGAIAQLSlnSPEnqaaiartgAITPLTALVREGTAE-VKEQSAAAL 574
                 566778888888666655555667799***********************977422222333344444999999999887655.588888877 PP

  == domain 8  score: 1.8 bits;  conditional E-value: 0.18
      HEAT_2  31 ealpaLvellededpavRraaae.aLgaig.........dpealpaLkelldd 73 
                   +p L++ll++ +  +++aa   a g +g          +++ + L + + +
  KOO24493.1 727 HGIPPLIDLLTSGSLSTQAAALAiATGLVGllgtgtaeaQEQVTQMLIKFASH 779
                 55889999998888888777775244444322233322235555656554444 PP

  == domain 9  score: 5.4 bits;  conditional E-value: 0.014
      HEAT_2   2 daLlqalendpdpevrraairaLg......rignp....ealpaLvelleded...pavRraaaeaLg...aigdpe....alpaLkellddddddvvR 80 
                 ++L+ +l ++ +  +++aa+            g+     ++ ++L+++++++d   + v + a+e L+   a+++p+    + + L +ll   ++++vR
  KOO24493.1 730 PPLIDLL-TSGSLSTQAAALAIATglvgllGTGTAeaqeQVTQMLIKFASHSDnitAIVEAGAIERLVmqiALKSPQhrvqVTAQLIALLG-ASEAEVR 826
                 5666666.55554444444432224556552233311225677888888665545445888888888653344443333438888888775.5778888 PP

      HEAT_2  81 eaAaeaL 87 
                 ++A  aL
  KOO24493.1 827 QRAWNAL 833
                 8887666 PP

  == domain 10  score: 6.1 bits;  conditional E-value: 0.0084
      HEAT_2  30 p...ealpaLvellededpavRraaaeaLgaig 59 
                 +   ++ + L+ ll  ++++vR+ a +aL  ++
  KOO24493.1 805 QhrvQVTAQLIALLGASEAEVRQRAWNALKDMA 837
                 133466788888888888888888888887664 PP

  == domain 11  score: 2.6 bits;  conditional E-value: 0.1
      HEAT_2    3 aLlqalendpdpevrraairaLgrignp..........ealpaLvellededpavRraaaeaLgaig..dpealp 65  
                  +L+++l+  ++p+ +  a+ aL +++n+            ++ L+ +   ++++ R +a+  L ++    p+al+
  KOO24493.1  929 PLIELLT--SNPKAQGYAAAALCNLANEadarnelieqGGVDPLTAISHGPESWLRTQAVGILQRLNieAPAALS 1001
                  6888885..889999999999997777664455444445588888888888888888888888765332666665 PP

  == domain 12  score: -2.5 bits;  conditional E-value: 3.8
      HEAT_2   51 aaeaLgaigdpealp 65  
                  +aeaL++ ++++a++
  KOO24493.1 1093 VAEALAKHKSQQAAK 1107
                  456666666544432 PP

>> HEAT  HEAT repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.6   0.0     0.057     1e+02       1      29 [.      33      60 ..      33      61 .. 0.88
   2 ?    4.5   0.1      0.03        53       2      29 ..      75     103 ..      74     104 .. 0.90
   3 ?   -2.8   0.2       6.3   1.1e+04      19      28 ..     110     119 ..     109     120 .. 0.88
   4 ?   -2.3   0.0       4.4   7.8e+03       4      27 ..     217     240 ..     216     241 .. 0.85
   5 ?    0.3   0.1      0.63   1.1e+03      11      29 ..     253     271 ..     248     273 .. 0.86
   6 ?    0.6   0.1       0.5     9e+02      11      29 ..     384     402 ..     377     404 .. 0.85
   7 ?    6.1   0.0    0.0085        15       3      29 ..     418     444 ..     417     446 .. 0.91
   8 ?   -0.7   0.0       1.3   2.4e+03       4      28 ..     512     536 ..     510     538 .. 0.83
   9 ?   -2.7   0.1       5.8     1e+04      15      27 ..     565     577 ..     557     578 .. 0.65
  10 ?   -3.0   0.0       7.3   1.3e+04      20      29 ..     613     622 ..     606     624 .. 0.68
  11 ?   -3.1   0.0       8.2   1.5e+04       2      21 ..     729     748 ..     729     749 .. 0.81
  12 ?    7.5   0.1    0.0031       5.6       5      28 ..     814     837 ..     811     839 .. 0.92
  13 ?   -3.6   0.1        10   1.8e+04      19      28 ..     943     952 ..     936     953 .. 0.77

  Alignments for each domain:
  == domain 1  score: 3.6 bits;  conditional E-value: 0.057
                HHHHHHHHHT-SSHHHHHHHHHHHHHHHH CS
        HEAT  1 llPlllkllsDpspeVReaAakaLgalae 29
                +lP+ l++l+++sp+  + Aa  L++la+
  KOO24493.1 33 ILPP-LQMLTSKSPQAQAQAAGILAHLAR 60
                6888.7779***************99986 PP

  == domain 2  score: 4.5 bits;  conditional E-value: 0.03
                 HHHHHHHHT-SSHH.HHHHHHHHHHHHHH CS
        HEAT   2 lPlllkllsDpspe.VReaAakaLgalae 29 
                 + +l+ ll +++p  V e Aa+a+++l++
  KOO24493.1  75 MKPLVDLLDHTCPLeVQEYAALAITELCR 103
                 567899999999999************96 PP

  == domain 3  score: -2.8 bits;  conditional E-value: 6.3
                 HHHHHHHHHH CS
        HEAT  19 aAakaLgala 28 
                 +Aa +Lg +a
  KOO24493.1 110 TAAATLGSIA 119
                 89*****997 PP

  == domain 4  score: -2.3 bits;  conditional E-value: 4.4
                 HHHHHHT-SSHHHHHHHHHHHHHH CS
        HEAT   4 lllkllsDpspeVReaAakaLgal 27 
                 ll+ +l    p+   +Aa +L +l
  KOO24493.1 217 LLVAMLGAGTPKAKLNAAASLWRL 240
                 578899999999999***999777 PP

  == domain 5  score: 0.3 bits;  conditional E-value: 0.63
                 -SSHHHHHHHHHHHHHHHH CS
        HEAT  11 DpspeVReaAakaLgalae 29 
                 +++p   + Aa aL++la 
  KOO24493.1 253 STDPMTQKFAAAALARLAT 271
                 68999999********985 PP

  == domain 6  score: 0.6 bits;  conditional E-value: 0.5
                 -SSHHHHHHHHHHHHHHHH CS
        HEAT  11 DpspeVReaAakaLgalae 29 
                 D++ +  e Aa aL++la+
  KOO24493.1 384 DKADNRQEQAAAALANLAS 402
                 777778899*******997 PP

  == domain 7  score: 6.1 bits;  conditional E-value: 0.0085
                 HHHHHHHT-SSHHHHHHHHHHHHHHHH CS
        HEAT   3 PlllkllsDpspeVReaAakaLgalae 29 
                  +ll ll++ps++  e+++ka+++la 
  KOO24493.1 418 EPLLALLESPSSKAKENSVKAIAKLAY 444
                 57999*******************985 PP

  == domain 8  score: -0.7 bits;  conditional E-value: 1.3
                 HHHHHHT-SSHHHHHHHHHHHHHHH CS
        HEAT   4 lllkllsDpspeVReaAakaLgala 28 
                 +l+ +l ++s e  + Aa a+++l+
  KOO24493.1 512 PLVLMLGSSSVELQSEAAGAIAQLS 536
                 4566789999999********9986 PP

  == domain 9  score: -2.7 bits;  conditional E-value: 5.8
                 HHHHHHHHHHHHH CS
        HEAT  15 eVReaAakaLgal 27 
                 eV e +a aL al
  KOO24493.1 565 EVKEQSAAALWAL 577
                 5666666666554 PP

  == domain 10  score: -3.0 bits;  conditional E-value: 7.3
                 HHHHHHHHHH CS
        HEAT  20 AakaLgalae 29 
                 ++ aL+ l++
  KOO24493.1 613 SVGALCSLCS 622
                 5667777776 PP

  == domain 11  score: -3.1 bits;  conditional E-value: 8.2
                 HHHHHHHHT-SSHHHHHHHH CS
        HEAT   2 lPlllkllsDpspeVReaAa 21 
                 +P+l+ ll++ s +  +aA+
  KOO24493.1 729 IPPLIDLLTSGSLSTQAAAL 748
                 69999999998888877775 PP

  == domain 12  score: 7.5 bits;  conditional E-value: 0.0031
                 HHHHHT-SSHHHHHHHHHHHHHHH CS
        HEAT   5 llkllsDpspeVReaAakaLgala 28 
                 l+ ll  +++eVR+ A +aL ++a
  KOO24493.1 814 LIALLGASEAEVRQRAWNALKDMA 837
                 78999***************9997 PP

  == domain 13  score: -3.6 bits;  conditional E-value: 10
                 HHHHHHHHHH CS
        HEAT  19 aAakaLgala 28 
                  Aa aL++la
  KOO24493.1 943 YAAAALCNLA 952
                 5899999987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1149 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       711  (0.0396564); expected 358.6 (0.02)
Passed bias filter:                      406  (0.0226449); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.91u 0.31s 00:00:01.22 Elapsed: 00:00:00.48
# Mc/sec: 7188.18
//
Query:       KOO24494.1  [L=234]
Description: mtw1p [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    7.8e-21   74.6   0.6    1.3e-20   73.8   0.6    1.4  1  Mis12          Mis12 protein
  ------ inclusion threshold ------
       0.04   14.4   0.8       0.33   11.4   0.0    2.2  2  OHCU_decarbox  OHCU decarboxylase
      0.084   11.8   0.1      0.096   11.6   0.1    1.0  1  LMBR1          LMBR1-like membrane protein
       0.25   11.8   3.1        4.1    7.9   3.1    2.5  1  H-kinase_dim   Signal transducing histidine kinase, homodimer


Domain annotation for each model (and alignments):
>> Mis12  Mis12 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   73.8   0.6     3e-24   1.3e-20       5     131 ..      13     133 ..      10     144 .. 0.77

  Alignments for each domain:
  == domain 1  score: 73.8 bits;  conditional E-value: 3e-24
                 HHCTHHHHHHHHHHHHHHHHHHHHHHHHHHHH........TTSTHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTS---HHHHC....CCH CS
       Mis12   5 hlgftPqsliddiinavndllyravdavekvLdkkleedeeeekaaeesteeieeGtakletlleasvDknfdkfElyvlrniltipeelve....wvr 99 
                  lgf+P +lid++ n+v   +++ +da+e++L         +  +  ++ + ++eG+   e  +    D+n+dkfEly+l+n++++p++l+      ++
  KOO24494.1  13 VLGFKPTALIDEVFNIVRFSIQQSTDALEEALR--------QHPELGQQPKVVREGVIHWEDSMLRVADQNLDKFELYTLKNVFAVPDDLQLaspqPMV 103
                 79******************************4........3334456899*************************************88744444555 PP

                 CCHHCCTTSHHHHHHHHHHHHHHHHHHHHHHH CS
       Mis12 100 Lphdegleleerldeeieelrrkleaelklnk 131
                  +++ +l+ e  +++  ++l+r l+++++l++
  KOO24494.1 104 TEEESQLDAE--TEALWAQLQRSLATKRELQR 133
                 5555555542..44444555555555555554 PP

>> OHCU_decarbox  OHCU decarboxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   7.3e-05      0.33      37      67 ..      21      54 ..      11      76 .. 0.73
   2 ?    1.1   0.5      0.12   5.2e+02      14      53 ..     123     160 ..      92     185 .. 0.61

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 7.3e-05
                   HHHHHHHHCCCS...-HHHHHHHHCTS--TTSCC CS
  OHCU_decarbox 37 Liaavaealeal...seeelleilsaHPrLGeka 67
                   Li+ v ++++     s+++l+e+l++HP+LG++ 
     KOO24494.1 21 LIDEVFNIVRFSiqqSTDALEEALRQHPELGQQP 54
                   444444443332333679*************963 PP

  == domain 2  score: 1.1 bits;  conditional E-value: 0.12
                    CCSTTHHHHHHHHHCGS-SSHHHHHHHHHHHCCCS-HHHH CS
  OHCU_decarbox  14 tlfepspwlaelalarpfssyeaLiaavaealealseeel 53 
                      + ++++l++ + a   + +++L aa +e +++l ++++
     KOO24494.1 123 RSLATKRELQRKLTA--AQRTTELWAAHRESVHKLAASQQ 160
                    333333333333333..45556666666666666644443 PP

>> LMBR1  LMBR1-like membrane protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.1   2.1e-05     0.096     199     324 ..      23     162 ..       6     186 .. 0.67

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 2.1e-05
       LMBR1 199 deelkklyfeaaklntekeeaereledllkevkklrksisesdp.lrkyleeilk...........kvPeeiaeklks.nenkteeslaklekqlikal 284
                 de+++ ++f++++ ++ +eea r+  +l ++ k +r+ + + +  + ++ ++ l+            vP +++    +   ++ e++l  ++++l+ +l
  KOO24494.1  23 DEVFNIVRFSIQQSTDALEEALRQHPELGQQPKVVREGVIHWEDsMLRVADQNLDkfelytlknvfAVPDDLQLASPQpMVTEEESQLDAETEALWAQL 121
                 66666677777777766666666666555555555555544443233444444446666666666667776666655566777999************* PP

       LMBR1 285 qkrertekqwkrllekalelediiknksskekefksses.s 324
                 q++  t+++++r l+ a ++ ++  +  ++ +++  s++ s
  KOO24494.1 122 QRSLATKRELQRKLTAAQRTTELWAAHRESVHKLAASQQaS 162
                 *****************777777666666666666554432 PP

>> H-kinase_dim  Signal transducing histidine kinase, homodimeric domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.9   3.1   0.00092       4.1      36      65 ..     139     181 ..      26     183 .. 0.82

  Alignments for each domain:
  == domain 1  score: 7.9 bits;  conditional E-value: 0.00092
  H-kinase_dim  36 r.............fenglkasvtelksslqnlgrisgeLQeg 65 
                   +              +  +++++++++ +lq l+r+s+ LQ+g
    KOO24494.1 139 QrttelwaahresvHKLAASQQASNVQGTLQGLQRLSDTLQDG 181
                   3666666666666666678899999****************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (234 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       983  (0.0548274); expected 358.6 (0.02)
Passed bias filter:                      518  (0.0288917); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.46u 0.25s 00:00:00.71 Elapsed: 00:00:00.41
# Mc/sec: 1707.72
//
Query:       KOO24495.1  [L=258]
Description: short-chain dehydrogenase reductase sdr [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.6e-15   57.1   0.0    1.3e-11   44.3   0.0    2.1  2  adh_short     short chain dehydrogenase
    1.5e-10   41.1   0.0    2.8e-09   36.9   0.0    2.0  1  adh_short_C2  Enoyl-(Acyl carrier protein) reductase


Domain annotation for each model (and alignments):
>> adh_short  short chain dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.3   0.0   1.4e-15   1.3e-11      40     143 ..       4     106 ..       1     110 [. 0.92
   2 !   10.7   0.0   2.9e-05      0.26     140     189 ..     117     168 ..     113     172 .. 0.84

  Alignments for each domain:
  == domain 1  score: 44.3 bits;  conditional E-value: 1.4e-15
                 HHHHHHHTTSEEEEEE-TTTSHHHHHHHHHHHHHHHSSESEEEE---SS--SSGGGCSHHHHHHHHHHHTHHHHHHHHHHHHHHH.HCTTEEEEEEEEG CS
   adh_short  40 vakelkeegakalaiqvDvtdreevealvekavkklgkldvLvnNAGitgsgpfselseeewervievNltgvflltravlpaml.kqssGrIvnvsSv 137
                 ++++ ++ +++a+++++D+++ +++++  +++++  g+ d+Lv NAG+   +p+  l+++ we+ +++ + g  ll+r++lp +  +  +Gr+v v+S+
  KOO24495.1   4 ACEQSGAPSDRAIFVPLDLASCDSISECASHVRSACGRCDALVCNAGL--LHPQRTLTADGWEANLACHVLGHQLLARLLLPLLRqSPAGGRVVSVAST 100
                 5667777799**************************************..799999***************************9978899********9 PP

                 GGTSB- CS
   adh_short 138 agkvpv 143
                   kv++
  KOO24495.1 101 LHKVAS 106
                 887765 PP

  == domain 2  score: 10.7 bits;  conditional E-value: 2.9e-05
                 TSB-TTBHHHHHHHHHHHHHHHHHHHHHGGGT..EEEEEEEESSBSSHHHHH CS
   adh_short 140 kvpvagvaaYsAsKaavagltrslakelaptg..irvnavaPGlvdTdmake 189
                 + ++ ++ aY+ sK a ++l+ + ++  + +g  + +++++PG v T++++e
  KOO24495.1 117 ERGYTMFGAYGRSKLAQVALSAEQQRRESARGsgVVCVSLHPGNVITEVTRE 168
                 67899***************98877666665556**************9986 PP

>> adh_short_C2  Enoyl-(Acyl carrier protein) reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.9   0.0   3.2e-13   2.8e-09      42     225 ..      13     213 ..       2     216 .. 0.70

  Alignments for each domain:
  == domain 1  score: 36.9 bits;  conditional E-value: 3.2e-13
                   TSEE.EE--TTSHHHHHHHHHHHHHHHSSEEEEEE-----EGCSS-GGGH-HHHHHHHHHHHTHHHHHHHHHHHHHCTSC...CEEEEEEEGG.... CS
  adh_short_C2  42 gaev.lecDVtdeeqvealveevvekfgklDilvnnagiapklkgpfletsreefdraldvnlyslfllakaalplmkeg...gsivnlssvg.... 130
                   ++++ +++D ++ +++ +++++v++  g+ D lv nag  ++  ++  +++ ++++  l+  + +  lla+ +lpl++++   g++v ++s+     
    KOO24495.1  13 DRAIfVPLDLASCDSISECASHVRSACGRCDALVCNAGLLHP--QR--TLTADGWEANLACHVLGHQLLARLLLPLLRQSpagGRVVSVASTLhkva 105
                   34435************************************9..55..7899***********************99887788******99861111 PP

                   ..........GTSBSTTTTHHHHHHHHHHHHHHHHHHHHGG..GTEEEEEEEE--BHCTGGGGSTTHHHHHHHHHHHSTTSS-B-HH...HHHHHHH CS
  adh_short_C2 131 ..........aervvpnynaygaaKaalealtrylAvelgp..kgiRvNavspgpikTlaasgikgfdelleelearaplgrlgtpe...evaeaal 212
                             +er+ +   ayg +K a +al+    +   +   g+ + + +pg + T+ +++++   +++ + +a  pl r+g p+     a ++ 
    KOO24495.1 106 saadlladpmSERGYTMFGAYGRSKLAQVALSAEQQRRESArgSGVVCVSLHPGNVITEVTREMP--YAVRLAYQAAGPLIRFGAPSlydGAATTVY 200
                   11122221112334444458888888888877666555544024444445558888888888888..566777777788888886642214555555 PP

                   HHCSGGGTT--SE CS
  adh_short_C2 213 fLasdeasyitGq 225
                     asd+a+   G+
    KOO24495.1 201 AAASDDAATLRGA 213
                   6667777777665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (258 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       447  (0.0249317); expected 358.6 (0.02)
Passed bias filter:                      321  (0.017904); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.42u 0.22s 00:00:00.64 Elapsed: 00:00:00.37
# Mc/sec: 2069.02
//
Query:       KOO24496.1  [L=1162]
Description: g2 mitotic-specific cyclin s13-6-like protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.5e-25   89.4   0.2    2.7e-25   88.5   0.2    1.4  1  Cyclin_N        Cyclin, N-terminal domain
      1e-15   57.8   0.0    1.6e-15   57.2   0.0    1.3  1  Pkinase         Protein kinase domain
    1.2e-08   35.4   0.0    2.9e-08   34.2   0.0    1.6  1  Gly_transf_sug  Glycosyltransferase sugar-binding region cont
    2.2e-05   23.9   0.0    4.7e-05   22.8   0.0    1.5  1  Pkinase_Tyr     Protein tyrosine kinase
  ------ inclusion threshold ------
       0.06   13.3   0.1        0.2   11.6   0.1    1.9  1  F-box-like      F-box-like


Domain annotation for each model (and alignments):
>> Cyclin_N  Cyclin, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   88.5   0.2   7.6e-29   2.7e-25      14     126 ..     793     905 ..     785     906 .. 0.96

  Alignments for each domain:
  == domain 1  score: 88.5 bits;  conditional E-value: 7.6e-29
                 S-STTCTTCTSSS-HHHHHHHHHHHHHHHHHTT--TTHHHHHHHHHHHHHHHS---CCCHHHHHHHHHHHHHHHHSSS---HHHHHHHTTTSS-HHHHH CS
    Cyclin_N  14 lpkpdyldqqpelnpemRailidwlvevaekfkltpetlflavnyldRflskksvpkdklqlvgatcLllAaKveeisppkledlvyitdeafteeeil 112
                 +p  d+l +qp+ln +m +il+dwl  v+ kfk+ ++ l +a +++ R++s+ +v++++lqlvg+++L lA+K ee+ +p+++d+++i+d+a+t  +++
  KOO24496.1 793 TPGLDFLAKQPHLNARMWTILYDWLAVVSFKFKFVSRSLQVAGDFMMRYMSQVQVERKELQLVGIGALCLACKHEEVMIPNMNDFIFICDSAYTLPQLM 891
                 56678889******************************************************************************************* PP

                 HHHHHHHHHTTT-- CS
    Cyclin_N 113 emErliLetLnfdl 126
                  mE +iL+tL+ +l
  KOO24496.1 892 VMEVKILTTLQLQL 905
                 **********9877 PP

>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.2   0.0   4.6e-19   1.6e-15      94     264 .]     593     759 ..     517     759 .. 0.77

  Alignments for each domain:
  == domain 1  score: 57.2 bits;  conditional E-value: 4.6e-19
                 S--HHHHHHHHHHHHHHHHHHHHTTEE-SS-SGGGEEEET.TTE......EEE-SGTTSEESSSSCSBCTTTSCGGGS-HHHH...TTSCBSHHHHHHH CS
     Pkinase  94 slseeeakkiakqilegleylHskgiiHrDlKpeNiLide.kge......lKitDFGlakelessskltsfvgtseYlAPEvl...keneyskkvDvWs 182
                  l++  ++++++q+l++l++ H++g+ H  l p  +L ++ +        lK++DFG++         ++  + +   +PE+    k+++y+++ D+W+
  KOO24496.1 593 PLPPVMLRSFLYQLLSALAWSHARGVAHGNLAPYRVLAKTlD-AakdqylLKLGDFGFSPPHAALC-NEELPIRPSRASPELQadnKHKHYGPANDLWA 689
                 45666899*****************************99532.2346689*********9888765.8999999999*****99989999********* PP

                 HHHHHHHHHHSS-STTTSSHHHHHHHHHHTHHHHHHHCTSHH...HHHTTS-HHHHHHHHHHT-SSGCCSTTHHHHHTSGGG CS
     Pkinase 183 lGvilyelltgkppfsgekgkekvekeldqlekilkilgetkeklpeaseiseeakdllkkllkkdpkkRltaeellqhpyl 264
                 lG +++e+ +g+   +       v++++++l      ++++ +     + + ++ ++ll+k+lkk+ k+R+ta+++l hpy+
  KOO24496.1 690 LGTVFAEMACGNRDPQ-------VYMMIQDL-----DMTPEGQLESSLHMLCDDGRNLLRKMLKKEWKERITAADALCHPYF 759
                 **********998666.......45556552.....22344455566677799****************************8 PP

>> Gly_transf_sug  Glycosyltransferase sugar-binding region containing DXD motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.2   0.0   8.1e-12   2.9e-08      45      86 ..      81     122 ..      47     133 .. 0.87

  Alignments for each domain:
  == domain 1  score: 34.2 bits;  conditional E-value: 8.1e-12
  Gly_transf_sug  45 pwfeeakkllplfialsDllRlaiLykyGGiYlDtDvivlks 86 
                     + f++a+++l   +++sD++R+a+L+ +GG+Y D+Dv+    
      KOO24496.1  81 RAFLRAYDALETGVQRSDMWRYAVLFLHGGVYADIDVVARPA 122
                     47899********************************87655 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.8   0.0   1.3e-08   4.7e-05      96     251 ..     590     749 ..     505     755 .. 0.82

  Alignments for each domain:
  == domain 1  score: 22.8 bits;  conditional E-value: 1.3e-08
                  CTTTSBHHHHHHHHHHHHHHHHHHHHTTEEEST-SGGGEEEEE......TTEEEE-STTTHEETTTSSEEEETTSSTSGGGGS-HHHHHHSE...EEH CS
  Pkinase_Tyr  96 ekekltlkdllsfalqvAkGmeyLeskklvHrdlaarNvLlse......nkvvkisDfGLardiekddeyvkkeeaklpvkWmapEslkekk...fts 184
                    ++l    l sf +q+ +++++ +++ + H +la   vL ++      + + k++DfG +  +        +ee  ++    +pE   ++k   +  
   KOO24496.1 590 IGRPLPPVMLRSFLYQLLSALAWSHARGVAHGNLAPYRVLAKTldaakdQYLLKLGDFGFSPPH----AALCNEELPIRPSRASPELQADNKhkhYGP 683
                  566777778899****************************998888887889**********99....778888888999999****99888677889 PP

                  HHHHHHHHHHHHHHHTTSSGTTTTSHHHHHHHHHHTTEES-BBTTSBHHHHHHHHHHT-SSGGGS-- CS
  Pkinase_Tyr 185 ksDvWsfGvllwEiftlgespypglkneevleklkegkrlekpekcpeelyelmkkcweedpeeRpt 251
                  + D W+ G++  E+++  ++p   ++ ++ l++  eg+  +  +  +++  +l++k ++++ +eR t
   KOO24496.1 684 ANDLWALGTVFAEMACGNRDPQVYMMIQD-LDMTPEGQLESSLHMLCDDGRNLLRKMLKKEWKERIT 749
                  9***************8888988887776.5666666666666667777788888888888888876 PP

>> F-box-like  F-box-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.1   5.6e-05       0.2       2      44 ..     384     457 ..     383     460 .. 0.65

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 5.6e-05
  F-box-like   2 srLPdEiLlqIF.................................syLppsdLlrlalVCrrWrrvaldtplLWrr 44 
                   LPdE+Ll+ +                                 s+  ++ +  +  V+rrW ++a+   + W++
  KOO24496.1 384 EELPDELLLHMLslaacdetvpgydgefqcptfvagrdalvlgptSR-AARAWQIVHSVSRRWSSLANQV-EPWQQ 457
                 57**********66666655555555555555555554444444332.344477788**********876.66765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1162 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       426  (0.0237604); expected 358.6 (0.02)
Passed bias filter:                      354  (0.0197445); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.71u 0.28s 00:00:00.99 Elapsed: 00:00:00.42
# Mc/sec: 8312.77
//
Query:       KOO24497.1  [L=624]
Description: hypothetical protein Ctob_011482 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.19   12.1   5.0       0.32   11.4   0.1    2.8  2  ATP19     ATP synthase subunit K
       0.55   10.5   4.2         11    6.4   0.6    2.3  2  YiaAB     yiaA/B two helix domain


Domain annotation for each model (and alignments):
>> ATP19  ATP synthase subunit K
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.1   3.6e-05      0.32       8      49 ..     291     332 ..     289     342 .. 0.89
   2 ?    0.5   1.7     0.091   8.1e+02      15      28 ..     484     497 ..     482     552 .. 0.82

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 3.6e-05
                 STTSS--S-SHHHHHHHHH--XXXXXXXXXXXX...XXXXXX CS
       ATP19   8 aGravkshyLAlgtLgttglivylamggskkkkaaaappina 49 
                 aGr+v    L l+  +t+g++v+l m+ + ++ ++++ p++a
  KOO24497.1 291 AGRSVAALALTLALVATVGGLVSLHMSRPTEPLPTTTLPLSA 332
                 7****************************9998877666655 PP

  == domain 2  score: 0.5 bits;  conditional E-value: 0.091
                 S-SHHHHHHHHH-- CS
       ATP19  15 hyLAlgtLgttgli 28 
                 h LA+++L ++ l 
  KOO24497.1 484 HALAIAVLSLALLA 497
                 99*****9887543 PP

>> YiaAB  yiaA/B two helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.2   0.2    0.0028        25       4      25 ..     295     316 ..     293     319 .. 0.88
   2 ?    6.4   0.6    0.0012        11       7      37 ..     487     517 ..     483     519 .. 0.88

  Alignments for each domain:
  == domain 1  score: 5.2 bits;  conditional E-value: 0.0028
       YiaAB   4 qswlsfllalvlllvGlwylpl 25 
                 ++ l++ lalv+++ Gl+ l++
  KOO24497.1 295 VAALALTLALVATVGGLVSLHM 316
                 6889*************98877 PP

  == domain 2  score: 6.4 bits;  conditional E-value: 0.0012
       YiaAB   7 lsfllalvlllvGlwylpldlseKgfyamgl 37 
                 +  +l+l+ll++ + y+pl +  ++ +a++l
  KOO24497.1 487 AIAVLSLALLALSILYNPLRPAGRAALAAVL 517
                 66789*****************999999887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (624 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       547  (0.0305092); expected 358.6 (0.02)
Passed bias filter:                      314  (0.0175135); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.57u 0.24s 00:00:00.81 Elapsed: 00:00:00.43
# Mc/sec: 4370.11
//
Query:       KOO24498.1  [L=298]
Description: egl nine-like 3 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.1e-17   64.6   0.0    2.6e-17   63.5   0.0    1.6  2  2OG-FeII_Oxy_3  2OG-Fe(II) oxygenase superfamily
    5.8e-08   33.3   0.0    1.1e-07   32.4   0.0    1.4  1  2OG-FeII_Oxy_4  2OG-Fe(II) oxygenase superfamily


Domain annotation for each model (and alignments):
>> 2OG-FeII_Oxy_3  2OG-Fe(II) oxygenase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.0       1.4   1.3e+04      31      68 ..      83      98 ..      70     119 .. 0.56
   2 !   63.5   0.0   2.9e-21   2.6e-17       2      95 ..     144     245 ..     143     246 .. 0.91

  Alignments for each domain:
  == domain 1  score: -2.8 bits;  conditional E-value: 1.4
                    EEEEEE....ET-B--EEE..........---TT-EEE CS
  2OG-FeII_Oxy_3 31 tvllyLnekeseeGGelelyekdkeavkikpkkgrlvl 68
                    ++l y +                      +  +g+lv 
      KOO24498.1 83 SMLTYTH----------------------TAVRGDLVG 98
                    4444433......................233344433 PP

  == domain 2  score: 63.5 bits;  conditional E-value: 2.9e-21
                     EEEEE.-TT-EEEEE-SS--...--TT.-.EEEEEEEEE.....ET-B--EEE...............---TT-EEEEE-..B-TEEE--B.-SS CS
  2OG-FeII_Oxy_3   2 qvlry.gegqeykpHvDnfe...keegsgqrrltvllyLne.keseeGGelelyekdk.....eavkikpkkgrlvlFesdellpHevlpvtkgg 86 
                     ++++y g+g +y +H+Dn+    + e+ + rrlt+++yLne +++ +GGel+++           ++++p ++rl+lF++d + pHevl  ++  
      KOO24498.1 144 MIACYpGAGARYIRHCDNSCdsgRGERCNGRRLTAIIYLNEgWAPLDGGELRVFAPYApkgqpAVADVQPLFDRLLLFFADYRVPHEVLAAHA-- 236
                     6899*999*********9889986666688***********************988889999999*************************844.. PP

                     -EEEEEEEE CS
  2OG-FeII_Oxy_3  87 eRlsltgwi 95 
                     +Rl++t+w+
      KOO24498.1 237 DRLAITLWY 245
                     9*******8 PP

>> 2OG-FeII_Oxy_4  2OG-Fe(II) oxygenase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.4   0.0   1.2e-11   1.1e-07      10      92 ..     153     245 ..     144     246 .. 0.69

  Alignments for each domain:
  == domain 1  score: 32.4 bits;  conditional E-value: 1.2e-11
  2OG-FeII_Oxy_4  10 dvllnHdDvle........geRrvayilyleeeWkeddGGaL.ll..sddegd.vtksivPkwnqlvlFevkeshsvaevasvaekeRlsisgWf 92 
                       +++H D+          + Rr++ i+yl+e W + dGG+L  +  ++ +g+  + ++ P +++l lF      +v + +  a+++Rl+i+ W+
      KOO24498.1 153 ARYIRHCDNSCdsgrgercNGRRLTAIIYLNEGWAPLDGGELrVFapYAPKGQpAVADVQPLFDRLLLFFAD--YRVPHEVLAAHADRLAITLWY 245
                     446666666432333323335889******************555333445663589**********99883..3444434447789*******7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (298 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       406  (0.0226449); expected 358.6 (0.02)
Passed bias filter:                      347  (0.0193541); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.43u 0.22s 00:00:00.65 Elapsed: 00:00:00.37
# Mc/sec: 2383.65
//
Query:       KOO24499.1  [L=174]
Description: wd40 repeat-like protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (174 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       323  (0.0180155); expected 358.6 (0.02)
Passed bias filter:                      219  (0.0122148); expected 358.6 (0.02)
Passed Vit filter:                         7  (0.000390429); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.42u 0.21s 00:00:00.63 Elapsed: 00:00:00.41
# Mc/sec: 1277.20
//
Query:       KOO24500.1  [L=316]
Description: hypothetical protein Ctob_011479 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
     0.0037   15.8   0.0     0.0053   15.3   0.0    1.2  1  PAF-AH_p_II     Platelet-activating factor acetylhydrolase, i
  ------ inclusion threshold ------
      0.011   14.7   0.0      0.017   14.2   0.0    1.2  1  Chlorophyllase  Chlorophyllase
      0.033   13.8   0.0       0.05   13.1   0.0    1.3  1  DLH             Dienelactone hydrolase family
      0.083   12.5   0.0       0.14   11.8   0.0    1.4  1  Abhydrolase_1   alpha/beta hydrolase fold
       0.39    9.9   0.8       0.61    9.3   0.1    1.7  2  Hydrolase_4     Serine aminopeptidase, S33


Domain annotation for each model (and alignments):
>> PAF-AH_p_II  Platelet-activating factor acetylhydrolase, isoform II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.0   1.5e-06    0.0053     103     143 ..      38      77 ..      32      96 .. 0.85

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 1.5e-06
                  EEEE--TT--TTTTHHHHHHHHHTT-EEEEE---SS-SSEE CS
  PAF-AH_p_II 103 ivFsHGLgafRtlYsalcielAskGfvvaavEHrDesAaat 143
                  i+F+HG  ++    + +c  lAs Gf+v a E  + s aa+
   KOO24500.1  38 IIFAHGFLGSAYDCAHICEALASDGFLVCAPEMPE-SLAAS 77 
                  8*********9999*****************9654.44445 PP

>> Chlorophyllase  Chlorophyllase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   0.0   4.6e-06     0.017      47      86 ..      36      75 ..      12      94 .. 0.84

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 4.6e-06
  Chlorophyllase 47 pvvlflhGtllsnkfyskllnhiashGfivvaPqlykllp 86
                    + ++f hG+l s ++ +++ + +as Gf+v aP++ ++l+
      KOO24500.1 36 DAIIFAHGFLGSAYDCAHICEALASDGFLVCAPEMPESLA 75
                    5799*****************************9987765 PP

>> DLH  Dienelactone hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.0   1.4e-05      0.05      12      48 ..      34      70 ..      23     103 .. 0.87

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 1.4e-05
         DLH 12 kkpvvvviqeifGvndnikdiserlaeeGYvalaPdl 48
                +  +++ ++ + G   + ++i+e la+ G+++ aP++
  KOO24500.1 34 QGDAIIFAHGFLGSAYDCAHICEALASDGFLVCAPEM 70
                7889***********9999****************98 PP

>> Abhydrolase_1  alpha/beta hydrolase fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   3.8e-05      0.14       2      42 ..      37      75 ..      36     117 .. 0.74

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 3.8e-05
                   EEEEE-STTTCGGGGTTGHHHHHHHHTTSEEEEEEETTSTT CS
  Abhydrolase_1  2 vlvilhGlpgssdvwaerglapaLakdgfdvillDlrGvgy 42
                   ++++ hG++gs++  a   + +aLa dgf v+++ ++ +  
     KOO24500.1 37 AIIFAHGFLGSAYDCAH--ICEALASDGFLVCAPEMPESLA 75
                   79***************..**************99986655 PP

>> Hydrolase_4  Serine aminopeptidase, S33
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3   0.1   0.00017      0.61       6      36 ..      37      67 ..      32      70 .. 0.92
   2 ?   -3.3   0.1       1.2   4.2e+03      80      88 ..     107     115 ..     101     117 .. 0.83

  Alignments for each domain:
  == domain 1  score: 9.3 bits;  conditional E-value: 0.00017
  Hydrolase_4  6 vvvlvHGlaehsgryaelaeaLaaqGfavya 36
                 +++++HG+  ++   a+++eaLa  Gf v+a
   KOO24500.1 37 AIIFAHGFLGSAYDCAHICEALASDGFLVCA 67
                 799**************************98 PP

  == domain 2  score: -3.3 bits;  conditional E-value: 1.2
  Hydrolase_4  80 llGhSmGGl 88 
                  ++GhS G+ 
   KOO24500.1 107 IFGHSAGAG 115
                  79*****86 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (316 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       326  (0.0181828); expected 358.6 (0.02)
Passed bias filter:                      279  (0.0155614); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.44u 0.25s 00:00:00.69 Elapsed: 00:00:00.41
# Mc/sec: 2314.02
//
Query:       KOO24501.1  [L=81]
Description: hypothetical protein Ctob_002769 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (81 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       299  (0.0166769); expected 358.6 (0.02)
Passed bias filter:                      198  (0.0110436); expected 358.6 (0.02)
Passed Vit filter:                         5  (0.000278878); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.25s 00:00:00.59 Elapsed: 00:00:00.39
# Mc/sec: 616.54
//
Query:       KOO24502.1  [L=529]
Description: 24-dehydrocholesterol reductase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.5e-10   41.0   0.1    2.6e-10   40.2   0.1    1.4  1  FAD_binding_4  FAD binding domain


Domain annotation for each model (and alignments):
>> FAD_binding_4  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.2   0.1   1.5e-14   2.6e-10      46     138 ..     101     191 ..      89     192 .. 0.88

  Alignments for each domain:
  == domain 1  score: 40.2 bits;  conditional E-value: 1.5e-14
                    EEEEETTS--EEEEETTTTEEEEETTSBHHHHHHHHHHHTTECSSGGGTTCGSBHHHTTTTT-EETTEEGG--HHGTEEEEEEEETTSEEEEE CS
  FAD_binding_4  46 vvldlsrlnrileideeegtatveaGvtlgdlvealaakglllglepgsgipgtvGGaiatnagGygsekyGlirdnvlglevvladGevvrl 138
                     v+d+  + + l++++e++ +tve+ vt g+l  al   g++l++ p+  ++ tvGG++ + ++ + s++ Gl+++++l++e+ ladG+vv++
     KOO24502.1 101 AVVDMIDIVS-LDLKSETMSITVEPLVTTGQLTGALLHLGYTLPVVPEM-DDLTVGGLVNGTGIESSSHLEGLFHEQCLEFEICLADGTVVTA 191
                    5777755555.778889*******************999*****98887.678*************************************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (529 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       456  (0.0254337); expected 358.6 (0.02)
Passed bias filter:                      420  (0.0234257); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.53u 0.26s 00:00:00.79 Elapsed: 00:00:00.41
# Mc/sec: 3847.88
//
Query:       KOO24503.1  [L=178]
Description: hypothetical protein Ctob_002772 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
  ------ inclusion threshold ------
       0.26   11.2   5.8       0.31   10.9   5.8    1.1  1  SRP-alpha_N  Signal recognition particle, alpha subunit, N-te
       0.45   10.6   5.9       0.59   10.3   5.9    1.3  1  CBP_BcsO     Cellulose biosynthesis protein BcsO
       0.53   11.3  13.1       0.09   13.8   6.0    2.6  2  Spt5_N       Spt5 transcription elongation factor, acidic N-t


Domain annotation for each model (and alignments):
>> SRP-alpha_N  Signal recognition particle, alpha subunit, N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   5.8   5.2e-05      0.31     164     240 ..      75     161 ..      29     175 .. 0.47

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 5.2e-05
                  .XXXXXXXXXX............XXXXXXX.XXX.XXXXXXXXX..XXXXX..XXXXXXXXXXX....XXXXXXX..XXXXXXXXXXXXX..X CS
  SRP-alpha_N 164 atpetsrpstp............sglltakeagptaedvsrrar..kkankkrssagassgdeakasksskkkkkkpkkkgkkaRvWdad..g 240
                  a+p++  +st+            +  ++a++a+ +a+++ +rar  k+a++k +  ga++g  +k   +++k   k+++k k++R + a+  g
   KOO24503.1  75 AQPNAAAASTReadrsstcaprpGVAAAAQSAAAAAAAMRERARggKAAAGK-G--GAGKGGADK---EKEKMDMKERTKLKRQRDQSASflG 161
                  1111111111122222223333323555555666678888888854444433.2..233333332...1222222334555556655555552 PP

>> CBP_BcsO  Cellulose biosynthesis protein BcsO
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   5.9   9.9e-05      0.59     109     168 ..      59     114 ..      21     122 .. 0.78

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 9.9e-05
    CBP_BcsO 109 asaesvsiiaPvtiasrePvsapqpaaltietvppatvrphplasaaavseasaaseasr 168
                   + s ++ +P +++s +P +a   aa t e+   +t  p+p   aaa s a+aa+ a r
  KOO24503.1  59 FEHVSFDMRPPAPEPSAQPNAA---AASTREADRSSTCAPRPGVAAAAQS-AAAAAAAMR 114
                 4455556677777777777777...88999************77777777.555555555 PP

>> Spt5_N  Spt5 transcription elongation factor, acidic N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   6.0   1.5e-05      0.09      14      86 ..      37     129 ..       5     138 .. 0.64
   2 ?    0.9   1.1      0.15     9e+02      39      58 ..     137     156 ..     128     174 .. 0.50

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 1.5e-05
                 X........XXXXXXXXXXXX......XXXXXXXXXXXXXXXXXXXXXXXXXXXX.......XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
      Spt5_N  14 e........eeeeeeveggedd.....fiaeeeaeeeeedserddrshreldrrr.......qaeededaeeiaealeeRYgrsskkayrgea 86 
                          ee+e++ e+++ d     f  +  a+e+ ++ +  ++s re dr+         a + ++a + a+a++eR + ++++a +g a
  KOO24503.1  37 FaaaihrddEEDEDDEEVPAGDfehvsFDMRPPAPEPSAQPNAAAASTREADRSStcaprpgVAAAAQSAAAAAAAMRERARGGKAAAGKGGA 129
                 05555555466666667777775566654556677777777777777777777775555554555669************9988877776654 PP

  == domain 2  score: 0.9 bits;  conditional E-value: 0.15
                 XXXXXXXXXXXXXXXXXXXX CS
      Spt5_N  39 edserddrshreldrrrqae 58 
                 e+++ d +++ +l r+r++ 
  KOO24503.1 137 EKEKMDMKERTKLKRQRDQS 156
                 22223333334444444333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (178 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       883  (0.0492498); expected 358.6 (0.02)
Passed bias filter:                      321  (0.017904); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.40u 0.24s 00:00:00.64 Elapsed: 00:00:00.39
# Mc/sec: 1379.77
//
Query:       KOO24504.1  [L=397]
Description: hypothetical protein Ctob_002773 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.4e-46  157.6   0.2    1.7e-40  139.0   0.0    3.1  2  Pkinase_Tyr    Protein tyrosine kinase
    5.9e-45  153.7   0.0    1.6e-44  152.2   0.0    1.6  1  Pkinase        Protein kinase domain
    0.00089   19.2   0.0     0.0017   18.4   0.0    1.4  1  APH            Phosphotransferase enzyme family
     0.0048   15.9   0.0     0.0094   14.9   0.0    1.5  2  Haspin_kinase  Haspin like kinase domain


Domain annotation for each model (and alignments):
>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.4   0.0   0.00013      0.58       2      40 ..      61      98 ..      60     106 .. 0.90
   2 !  139.0   0.0   3.7e-44   1.7e-40      47     259 .]     126     363 ..     118     363 .. 0.83

  Alignments for each domain:
  == domain 1  score: 9.4 bits;  conditional E-value: 0.00013
                 EEEEEEEEESSEEEEEEEEETTTTSSEEEEEEEEESTTS CS
  Pkinase_Tyr  2 elgkklGeGafGkVvegtlkgekekkevkVavKtlkeea 40
                 +  k++GeG f+ V   +l+   + + +kVavK+lk++ 
   KOO24504.1 61 KKIKRIGEGGFAIVELHELT-LPDGTVTKVAVKILKDKV 98
                 67899**************9.99************9875 PP

  == domain 2  score: 139.0 bits;  conditional E-value: 3.7e-44
                  HHHHHHHHHHTS-BTTB--EEEEEESSSSEEEEEE--TTEBHHHHHHHTCTTTSBHHHHHHHHHHHHHHHHHHHHTT....EEEST-SGGGEEEEETT CS
  Pkinase_Tyr  47 elleeakimkklkhpnivkllgvctkeepllivteyvkgGdLlkfLrkkekekltlkdllsfalqvAkGmeyLeskk....lvHrdlaarNvLlsenk 140
                  ++  ea + k +k +n+vk +g+   +++ ++v e ++gG+Ll+ ++k   ++ + ++ l +a++ A+G++yL+  +    + Hrdl   N+L+s++ 
   KOO24504.1 126 RFEAEAVLTKLFKSKNVVKSYGIAKGSDKFMFVQECCSGGSLLDKIQKP--RSYSAEEALGWAIDTARGLAYLQGSSvnisVAHRDLKPENILISDEG 221
                  566666666666***********************************98..9*********************9765334489*************** PP

                  EEEE-STTTHEET....TTSSEE..................EETTSSTSGGGGS-HHHHHHSEEEHHHHHHHHHHHHHHHHTTSSGTTTTS..HHHHH CS
  Pkinase_Tyr 141 vvkisDfGLardi....ekddey..................vkkeeaklpvkWmapEslkekkftsksDvWsfGvllwEiftlgespypgl..kneev 214
                  v+ki+DfGL+r +    ++++                    +k ++++   ++mapE+++++ ++ k Dv+s+G++++E+ t  ++ y++l  +  +v
   KOO24504.1 222 VAKIADFGLSRMMdpevNRQQ-ElvgedvmkdqfgpdghsfSKMTRQTGTARYMAPECFTSTDYSRKVDVFSYGIMIYELWT-RKRAYEDLylTMDTV 317
                  ***********8843211222.13444444444445444445556677889*******************************.788999987677778 PP

                  HHHH.HTTEES-BBTTSBHHHHHHHHHHT-SSGGGS--HHHHHHHH CS
  Pkinase_Tyr 215 lekl.kegkrlekpekcpeelyelmkkcweedpeeRptfselvekl 259
                  ++++ +e+ r + p+++p+el+ ++++cw+ +pe Rp+f ++v +l
   KOO24504.1 318 AKMVaTENFRPTIPKHWPPELKGFIEECWHPNPEVRPEFDAIVVRL 363
                  888888999********************************99765 PP

>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  152.2   0.0   3.7e-48   1.6e-44       2     259 ..      61     360 ..      60     363 .. 0.92

  Alignments for each domain:
  == domain 1  score: 152.2 bits;  conditional E-value: 3.7e-48
                 EEEEEEEEESSEEE...EEEEETTTTEEEEEEEEECHCHCHHHH....................HHHHHHHHHHHHHSCTTB--EEEEEEESSEEEEEE CS
     Pkinase   2 ekleklGeGsfGkV...ykaveketgkivAvKkikkekakkkke....................kkvlrEikilkklkhpnivrlyevfeekdelylvl 77 
                 +k++++GeG+f+ V      + + t  +vAvK++k +    k +                     ++ +E  + k +k++n+v+ y++ + +d++++v+
  KOO24504.1  61 KKIKRIGEGGFAIVelhELTLPDGTVTKVAVKILKDKVPGPKPKavpgadyepppmvsvppeaiARFEAEAVLTKLFKSKNVVKSYGIAKGSDKFMFVQ 159
                 5789999***9999544345667899999****999998888778899999999999999988888889999999************************ PP

                 E--TTEBHHHHHHHHSS--HHHHHHHHHHHHHHHHHHHHTT....EE-SS-SGGGEEEETTTEEEE-SGTTSEESSSSCS................... CS
     Pkinase  78 eyveggeladllerkgslseeeakkiakqilegleylHskg....iiHrDlKpeNiLidekgelKitDFGlakelesssk................... 153
                 e+++gg+l d +++ +s+s eea  +a  +++gl+yl   +    + HrDlKpeNiLi+++g+ Ki+DFGl++ ++ + +                   
  KOO24504.1 160 ECCSGGSLLDKIQKPRSYSAEEALGWAIDTARGLAYLQGSSvnisVAHRDLKPENILISDEGVAKIADFGLSRMMDPEVNrqqelvgedvmkdqfgpdg 258
                 *************************************966556779******************************99999999*************** PP

                 .....BCTTTSCGGGS-HHHHTTSCBSHHHHHHHHHHHHHHHHHSS-STTTSSHHHHHHHHHHTHHHHHHHCTSHH...HHHTTS-HHHHHHHHHHT-S CS
     Pkinase 154 .....ltsfvgtseYlAPEvlkeneyskkvDvWslGvilyelltgkppfsgekgkekvekeldqlekilkilgetkeklpeaseiseeakdllkkllkk 247
                      +t ++gt +Y+APE  ++++ys+kvDv+s+G+++yel t+k  ++      + +  +d+   ++k++ ++++    +++ ++e+k +++++++ 
  KOO24504.1 259 hsfskMTRQTGTARYMAPECFTSTDYSRKVDVFSYGIMIYELWTRKRAYE------DLYLTMDT---VAKMVATENFRPTIPKHWPPELKGFIEECWHP 348
                 **************************************************......44555666...6677778899********************** PP

                 SGCCSTTHHHHH CS
     Pkinase 248 dpkkRltaeell 259
                 +p+ R+ ++ ++
  KOO24504.1 349 NPEVRPEFDAIV 360
                 ******988775 PP

>> APH  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.4   0.0   3.7e-07    0.0017     150     202 ..     180     237 ..     155     238 .. 0.81

  Alignments for each domain:
  == domain 1  score: 18.4 bits;  conditional E-value: 3.7e-07
                 HHHHHHHHHH--S.......SS-EEEE-SS-SGGGEEEC..TTEEEEE---TT-EEEECC CS
         APH 150 eqvlaalaallpg.......elptvllHgDlhpgNllvdpddgrvtGviDfedaglgppl 202
                 e++l +  ++++g       ++  ++ H+Dl+p N+l+   d  v  + Df+++++++p 
  KOO24504.1 180 EEALGWAIDTARGlaylqgsSVNISVAHRDLKPENILIS--DEGVAKIADFGLSRMMDPE 237
                 4477777777777778888899999**************..566667***********95 PP

>> Haspin_kinase  Haspin like kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.0      0.75   3.4e+03     141     165 ..      57      91 ..      45      98 .. 0.64
   2 !   14.9   0.0   2.1e-06    0.0094     227     258 ..     204     239 ..     165     254 .. 0.87

  Alignments for each domain:
  == domain 1  score: -3.3 bits;  conditional E-value: 0.75
  Haspin_kinase 141 iskelsl..........kelkslklvkgtypglll 165
                    +s++ ++          +el++l l  gt +++++
     KOO24504.1  57 VSQLKKIkrigeggfaiVELHELTLPDGTVTKVAV 91 
                    44444444446666666899999999999887765 PP

  == domain 2  score: 14.9 bits;  conditional E-value: 2.1e-06
  Haspin_kinase 227 eFEHRdLhldniLvdknlnvtlidlklsRle....s 258
                       HRdL+ +niL+ +++   + d+ lsR+     +
     KOO24504.1 204 SVAHRDLKPENILISDEGVAKIADFGLSRMMdpevN 239
                    567**************************9844433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (397 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       460  (0.0256568); expected 358.6 (0.02)
Passed bias filter:                      431  (0.0240393); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.49u 0.24s 00:00:00.73 Elapsed: 00:00:00.38
# Mc/sec: 3152.51
//
Query:       KOO24505.1  [L=768]
Description: copper-transporting ATPase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.7e-41  141.7   2.8    1.8e-41  141.6   0.8    2.0  2  E1-E2_ATPase  E1-E2 ATPase
    3.8e-37  128.6   0.1    7.3e-37  127.7   0.1    1.5  1  Hydrolase     haloacid dehalogenase-like hydrolase
    2.9e-05   24.0   0.2     0.0003   20.6   0.2    2.0  2  Hydrolase_3   haloacid dehalogenase-like hydrolase


Domain annotation for each model (and alignments):
>> E1-E2_ATPase  E1-E2 ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.0      0.32   1.9e+03      67     135 ..       5      74 ..       3     108 .. 0.58
   2 !  141.6   0.8   3.1e-45   1.8e-41      12     172 ..     243     419 ..     235     422 .. 0.94

  Alignments for each domain:
  == domain 1  score: -1.8 bits;  conditional E-value: 0.32
                   TTEE-TT-EEEE-EEEEEEEE-TTTSTTTTTSTTS--------HHHHHHHH.HHHHHHHHHHHHHHHHHH CS
  E1-E2_ATPase  67 gdmvfsGtvvvsgeakavVtatgedtelgkiarlveeakskktplqkkldk.lgkvlvpvvlliallvfl 135
                   g+  +  + v   +++a V + g d + ++ a+l ++++s+ t+  +  ++ + + l +++ ++++ +++
    KOO24505.1   5 GQVFYLASKVSVEQMVASVQRSGFDARAATDAELGANPSSAYTEEANLYKRqFLRSLPLAIAAVYCSTMV 74 
                   5556666777777777777777777777777777666665554444444331233333333333333333 PP

  == domain 2  score: 141.6 bits;  conditional E-value: 3.1e-45
                   TTS-EEEEGGG--TTSEEEEETT-B--SEEEEEEE-SEEE-TTTS---S-EE-G-TTEE-TT-EEEE-EEEEEEEE-TTTSTTTTTSTTS------- CS
  E1-E2_ATPase  12 dgteeeidakelvpGDivllkagdrvpaDgrivegsaevdesaLTGEslpvekekgdmvfsGtvvvsgeakavVtatgedtelgkiarlveeakskk 108
                    g +ee++a  l p D+v++ +g +vpaDg++v g+++vde+++ GE lpv+k+++d + +G+++ +g +  +V a+g d+ l+ki++lv++a+ +k
    KOO24505.1 243 HGALEEVPAGSLMPRDVVKVLPGAIVPADGVVVAGESTVDEAMISGEPLPVQKKARDWAVGGSINGNGVLWLRVSAVGADSVLAKIMKLVSDAQTRK 339
                   48899******************************************************************************************** PP

                   -HHHHHHHHHHHHHHHHHHHHHHHHHHS-STTTSSTT................HHHHHHHHHHHHHS-TTHHHHHHHHHH CS
  E1-E2_ATPase 109 tplqkkldklgkvlvpvvlliallvflialllgksla................eallralallvaaiPcaLplavplala 172
                   +++q ++d++++++vp+++ i+l++++++ +     +                 a+++++a lv+a+PcaL+la+p+a++
    KOO24505.1 340 PKVQAQADRVASYFVPMIISISLITWVFWSVAVWARVvssvlidesgladgyvMAFMFGVAALVIACPCALGLATPTAVM 419
                   *****************************884444336677788888899999************************987 PP

>> Hydrolase  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  127.7   0.1   1.2e-40   7.3e-37      26     210 .]     394     601 ..     378     601 .. 0.87

  Alignments for each domain:
  == domain 1  score: 127.7 bits;  conditional E-value: 1.2e-40
                 H..............CHHHHHHHHHH...HHCHHHHHHHHHHHHH...HHHHHHHHHETTTE...........HHHHTHHHHHHHH..HCHHHHHHHHH CS
                 x..............xxxxxxxxxxx...xxxxxxxxxxxxxxxx...xxxxxxxxxxxxxx...........xxxxxxxxxxxxx..xxxxxxxxxxx RF
   Hydrolase  26 a..............alalaaaletg...sehpigkalvaaakar...sgaltgfatfigrg...........ayaigkpewltal..dippdlgaaig 91 
                 a              al la  +  +   sehpig+a++ a++ar     + t+f    g+g            ++ g++ewl+++    + + +aa  
  KOO24505.1 394 AfmfgvaalviacpcALGLATPT--AvmhSEHPIGQAIISACHARalpLRPATSFMSKSGKGlrcnvggdvggDVLLGNREWLRSHgiSLSAENEAAAA 490
                 44444444445443344444444..466*****************7766666*********************************************** PP

                 HHHHHCHHHHHH..TTHHHHHHHHHHTHHBHTTHHHHHHHHHHTTEEEEEEESSEHHHHHHHHHHTTGGGESEEEEHHCES...STTTSHHHHHHHHHH CS
                 xxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxx RF
   Hydrolase  92 saqsqgrtvall..qaralavftiadplkvkpeaaeavasLkaagievvlltgdnpetaeraanqlGddyfdaviasdiet...vakpspegkvaaire 185
                   +s g tv+l+  ++r  +++++ad   +kp+a +++a L+  g+ v+++tgdn++ta  + +qlG         +        a+ spegk + + e
  KOO24505.1 491 GKESLGMTVVLValDGRPAGMLALADA--LKPDAPQVLAFLHTLGVAVYMATGDNERTAAYVSSQLG--------FH---SsrvLAGMSPEGKAQFVGE 576
                 ************99*************..**************************************........33...3346*************** PP

                 HTSTGGGEEEEESSHHHHHHHHHTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxx RF
   Hydrolase 186 LqgkpeevamVGDgvnDaaalaaAg 210
                 L+  +e vamVGDgvnDa+ala+A+
  KOO24505.1 577 LKRAGEVVAMVGDGVNDAPALAQAD 601
                 **99999*****************8 PP

>> Hydrolase_3  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.8   0.0     0.056   3.4e+02      21      55 ..     523     557 ..     515     563 .. 0.86
   2 !   20.6   0.2     5e-08    0.0003     198     247 ..     576     625 ..     569     633 .. 0.85

  Alignments for each domain:
  == domain 1  score: 0.8 bits;  conditional E-value: 0.056
                  HHHHHHHHHTTSEEEEE-SS-HHHHHHHHHHCCCC CS
  Hydrolase_3  21 keaikklkekgikvviATGRslravlpvleelgld 55 
                   ++++ l+  g+ v  ATG + r++ +v  +lg+ 
   KOO24505.1 523 PQVLAFLHTLGVAVYMATGDNERTAAYVSSQLGFH 557
                  5788899999*****************99999975 PP

  == domain 2  score: 20.6 bits;  conditional E-value: 5e-08
                  HCT--GGGEEEEESSGGGHHHHHHSSEEEEETTS-HHHHHHSSEEE--GG CS
  Hydrolase_3 198 elnisleeviafGDgeNDieMLeaaglgvAmgnaseevkkaAdyvtksnn 247
                  el+   e v+ +GDg ND + L +a++g+A+g++++ +++ Ad v  + +
   KOO24505.1 576 ELKRAGEVVAMVGDGVNDAPALAQADVGIALGSGTDVAIETADVVLMKSH 625
                  56677788999*********************************987765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (768 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       561  (0.0312901); expected 358.6 (0.02)
Passed bias filter:                      301  (0.0167884); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.58u 0.30s 00:00:00.87 Elapsed: 00:00:00.43
# Mc/sec: 5417.79
//
Query:       KOO24506.1  [L=230]
Description: hypothetical protein Ctob_002771 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
     0.0035   17.5   0.0     0.0085   16.2   0.0    1.6  1  ACP_syn_III_C  3-Oxoacyl-[acyl-carrier-protein (ACP)] synthas
  ------ inclusion threshold ------
      0.015   15.2   0.0        2.6    8.0   0.0    2.5  2  DUF3606        Protein of unknown function (DUF3606)
      0.061   13.4   0.4       0.13   12.3   0.4    1.6  1  DUF2120        Uncharacterized protein conserved in archaea (
        1.5    8.6   6.3        2.4    8.0   6.3    1.5  1  PIN_8          PIN like domain


Domain annotation for each model (and alignments):
>> ACP_syn_III_C  3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.0   1.9e-06    0.0085       7      46 ..     168     207 ..     163     209 .. 0.92

  Alignments for each domain:
  == domain 1  score: 16.2 bits;  conditional E-value: 1.9e-06
                    -GGG-SEEEE-SSSHHHHHHHHHHHT--GGGB--THHHH- CS
  ACP_syn_III_C   7 tpedidalvphqanlriidavakklglpeekvvvnldeyG 46 
                    +p+++d  v+ q++ ri +av +++g+++e+v++ ++ yG
     KOO24506.1 168 APSQLDPQVLMQVQMRISQAVQQRFGVNDEQVMTAVELYG 207
                    68899999*****************************999 PP

>> DUF3606  Protein of unknown function (DUF3606)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.5   0.0    0.0073        33      14      40 ..      78     104 ..      78     105 .. 0.96
   2 ?    8.0   0.0   0.00058       2.6      26      44 ..     190     208 ..     188     211 .. 0.91

  Alignments for each domain:
  == domain 1  score: 4.5 bits;  conditional E-value: 0.0073
     DUF3606  14 nldeeyevayWakklgvteeqLraAVr 40 
                 nl++e+ ++ + + ++ + +qL aA+r
  KOO24506.1  78 NLSDEHALQLFQQNFEHSLDQLIAAIR 104
                 899***********************8 PP

  == domain 2  score: 8.0 bits;  conditional E-value: 0.00058
     DUF3606  26 kklgvteeqLraAVraVGn 44 
                 +++gv +eq+ +AV+ +G 
  KOO24506.1 190 QRFGVNDEQVMTAVELYGA 208
                 79*************9995 PP

>> DUF2120  Uncharacterized protein conserved in archaea (DUF2120)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.4     3e-05      0.13      22      99 ..      18      94 ..       3     116 .. 0.80

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 3e-05
     DUF2120 22 keeiLivrgvsrkkee.leeleskleellekldaeevdleseeakkliekldesireveeieeevdafglerlkeslEa 99
                 +  ++v    rk+++ l el   l  + +++  + ++   e  k++iek+  ++r+ +++ + +d+++l+ +++++E+
  KOO24506.1 18 GTAYVVVHEHRRKQKKvLREL--ALAPISKEMLLKILNKSAEASKAVIEKIRMEVRNIQQQRNLSDEHALQLFQQNFEH 94
                555566666666666534433..5778899999999999999***********************************97 PP

>> PIN_8  PIN like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.0   6.3   0.00053       2.4      38     131 ..      21     127 ..      12     215 .. 0.69

  Alignments for each domain:
  == domain 1  score: 8.0 bits;  conditional E-value: 0.00053
       PIN_8  38 hqvalEfqrnresvis......kekkayedlekeleklkkaaekkleealkkwakkkald........teelrkelkkqleelkeelkaeleelkkssk 122
                 + v++E  r++++v++       +k+ + ++ ++ ++++ka+ +k++  +++ +++++l+        +++++++l++ ++++++++k + +++ +s+k
  KOO24506.1  21 YVVVHEHRRKQKKVLRelalapISKEMLLKILNKSAEASKAVIEKIRMEVRNIQQQRNLSdehalqlfQQNFEHSLDQLIAAIRSQYKVTEKAMDSSFK 119
                 667888888888888866665523333333334444444444444555555555555555455544557777777777777777777666555555555 PP

       PIN_8 123 adkeedpil 131
                  + ++dp  
  KOO24506.1 120 IH-QSDPEN 127
                 55.445544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (230 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1526  (0.0851135); expected 358.6 (0.02)
Passed bias filter:                      672  (0.0374812); expected 358.6 (0.02)
Passed Vit filter:                        56  (0.00312343); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.43u 0.28s 00:00:00.71 Elapsed: 00:00:00.41
# Mc/sec: 1702.18
//
Query:       KOO24507.1  [L=894]
Description: hypothetical protein Ctob_002774 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.7e-05   23.0   0.1    8.7e-05   21.8   0.1    1.7  1  EF-hand_5  EF hand
    4.4e-05   23.1   0.1    0.00011   21.8   0.1    1.7  1  EF-hand_6  EF-hand domain
    0.00014   21.2   0.0    0.00035   19.9   0.0    1.8  1  EF-hand_1  EF hand
    0.00075   19.4   0.1      0.035   14.2   0.0    3.6  2  TPR_2      Tetratricopeptide repeat
     0.0024   17.7   0.1      0.019   14.8   0.0    2.5  2  EF-hand_8  EF-hand domain pair
     0.0025   18.2   0.1     0.0065   16.9   0.1    1.7  1  EF-hand_7  EF-hand domain pair
     0.0027   17.4   0.0      0.012   15.4   0.0    2.2  1  TPR_1      Tetratricopeptide repeat
  ------ inclusion threshold ------
      0.025   15.4   4.2      0.078   13.8   0.1    3.9  4  TPR_14     Tetratricopeptide repeat
      0.051   13.8   0.0       0.31   11.4   0.0    2.5  1  TPR_8      Tetratricopeptide repeat
      0.089   12.9   6.9      0.095   12.8   0.0    4.4  5  TPR_7      Tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> EF-hand_5  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.8   0.1   4.9e-08   8.7e-05       3      23 ..     589     609 ..     587     612 .. 0.90

  Alignments for each domain:
  == domain 1  score: 21.8 bits;  conditional E-value: 4.9e-08
                 HHHHHH-SS-SSCE-HHHHHH CS
   EF-hand_5   3 dtFqaiDlNgDGkIskeELkt 23 
                 ++F++iD+++ G++s +ELk+
  KOO24507.1 589 ALFDQIDTDRNGHLSSDELKK 609
                 79*****************98 PP

>> EF-hand_6  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.8   0.1   6.1e-08   0.00011       3      28 ..     588     613 ..     586     622 .. 0.89

  Alignments for each domain:
  == domain 1  score: 21.8 bits;  conditional E-value: 6.1e-08
   EF-hand_6   3 reaFklfDkdgdGkidaeElrkalrk 28 
                 +++F+++D+d++G+++ +El+ka ++
  KOO24507.1 588 EALFDQIDTDRNGHLSSDELKKAVKQ 613
                 689********************986 PP

>> EF-hand_1  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.9   0.0     2e-07   0.00035       3      27 ..     588     612 ..     586     614 .. 0.91

  Alignments for each domain:
  == domain 1  score: 19.9 bits;  conditional E-value: 2e-07
                 HHHHHHHTTTSSSEEEHHHHHHHHH CS
   EF-hand_1   3 keiFrefDkDgdGkIdfeEfkellk 27 
                 + +F+ +D+D++G+++ +E+k+++k
  KOO24507.1 588 EALFDQIDTDRNGHLSSDELKKAVK 612
                 689*******************998 PP

>> TPR_2  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.4   0.1      0.51   9.2e+02      10      24 ..      13      27 ..      12      34 .. 0.83
   2 !   14.2   0.0   1.9e-05     0.035       6      32 ..      90     116 ..      85     118 .. 0.92

  Alignments for each domain:
  == domain 1  score: 0.4 bits;  conditional E-value: 0.51
       TPR_2 10 ayyklgdyeeAleaf 24
                ++++ g+++eA++ f
  KOO24507.1 13 VAMEEGRFAEAVDRF 27
                57899******9766 PP

  == domain 2  score: 14.2 bits;  conditional E-value: 1.9e-05
       TPR_2   6 nlGlayyklgdyeeAleafekAleldP 32 
                 +lG a++klg++ eA++ ++  le +P
  KOO24507.1  90 ALGIALEKLGRHSEAVKVYQLGLEVEP 116
                 79*********************9998 PP

>> EF-hand_8  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.1       1.5   2.7e+03      25      40 ..      28      43 ..      28      43 .. 0.87
   2 !   14.8   0.0   1.1e-05     0.019      27      52 ..     586     611 ..     584     613 .. 0.88

  Alignments for each domain:
  == domain 1  score: -1.7 bits;  conditional E-value: 1.5
   EF-hand_8 25 eeevdilfrefDtdgd 40
                +ee+ +l++++D++ d
  KOO24507.1 28 AEEAVELLNHVDRELD 43
                58999*******9876 PP

  == domain 2  score: 14.8 bits;  conditional E-value: 1.1e-05
   EF-hand_8  27 evdilfrefDtdgdGkisfeEFcvll 52 
                 ++++lf+ +Dtd++G++s +E    +
  KOO24507.1 586 KAEALFDQIDTDRNGHLSSDELKKAV 611
                 6899*****************98766 PP

>> EF-hand_7  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   0.1   3.6e-06    0.0065       4      34 ..     587     617 ..     584     640 .. 0.71

  Alignments for each domain:
  == domain 1  score: 16.9 bits;  conditional E-value: 3.6e-06
   EF-hand_7   4 lkeaFkelDtdgdgyldkeellrllrkifqg 34 
                  +  F+++Dtd++g+l+ +el++++++    
  KOO24507.1 587 AEALFDQIDTDRNGHLSSDELKKAVKQAQKD 617
                 56679*****************998874333 PP

>> TPR_1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.0   6.8e-06     0.012       7      33 ..      91     117 ..      88     118 .. 0.95

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 6.8e-06
                 HHHHHHHTT-HHHHHHHHHHHHHHSTT CS
       TPR_1   7 lGnayfklgkydeAleyyekALelnPn 33 
                 lG a+ klg++ eA++ y+  Le++P+
  KOO24507.1  91 LGIALEKLGRHSEAVKVYQLGLEVEPS 117
                 9***********************996 PP

>> TPR_14  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   0.1       1.9   3.5e+03      10      25 ..      13      28 ..      12      40 .. 0.70
   2 ?   13.8   0.1   4.3e-05     0.078       5      36 ..      89     119 ..      86     129 .. 0.84
   3 ?   -2.9   0.0        10   1.8e+04      16      28 ..     606     619 ..     601     628 .. 0.53
   4 ?   -1.7   0.1       4.2   7.5e+03      23      36 ..     626     639 ..     613     643 .. 0.75

  Alignments for each domain:
  == domain 1  score: -0.6 bits;  conditional E-value: 1.9
      TPR_14 10 allalGdpdeAiallr 25
                + ++ G+++eA++ + 
  KOO24507.1 13 VAMEEGRFAEAVDRFA 28
                5678899999988443 PP

  == domain 2  score: 13.8 bits;  conditional E-value: 4.3e-05
      TPR_14   5 lalaeallalGdpdeAiallrralalaPddae 36 
                 lal+ al+ lG++ eA+++++  l+  P+  +
  KOO24507.1  89 LALGIALEKLGRHSEAVKVYQLGLEVEPSV-T 119
                 79***********************99983.3 PP

  == domain 3  score: -2.9 bits;  conditional E-value: 10
      TPR_14  16 dpdeAiallrr.al 28 
                 ++++A++ +++ al
  KOO24507.1 606 ELKKAVKQAQKdAL 619
                 45555554444333 PP

  == domain 4  score: -1.7 bits;  conditional E-value: 4.2
      TPR_14  23 llrralalaPddae 36 
                  l++ l++ Pd ae
  KOO24507.1 626 ELEDSLRRSPDTAE 639
                 47777777787665 PP

>> TPR_8  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   0.00017      0.31       6      33 ..      90     117 ..      88     118 .. 0.92

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00017
                 HHHHHHHHTT-HHHHHHHHHHHHHHHHH CS
       TPR_8   6 nlgsiylklgdyeeAkeyyekaleldpd 33 
                  lg +++klg++ eA+++y+  le +p+
  KOO24507.1  90 ALGIALEKLGRHSEAVKVYQLGLEVEPS 117
                 68999*******************9985 PP

>> TPR_7  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.0       1.1     2e+03      11      24 ..      16      29 ..      13      42 .. 0.79
   2 ?   -1.3   0.1       1.7   3.1e+03      20      33 ..      61      75 ..      60      78 .. 0.73
   3 ?   12.8   0.0   5.3e-05     0.095       3      33 ..      89     117 ..      87     120 .. 0.92
   4 ?   -1.5   0.1         2   3.5e+03      17      33 ..     218     232 ..     217     245 .. 0.63
   5 ?   -1.4   0.1       1.7   3.1e+03       3      20 ..     244     261 ..     242     266 .. 0.83

  Alignments for each domain:
  == domain 1  score: -0.7 bits;  conditional E-value: 1.1
       TPR_7 11 rlGdyeeAielyeq 24
                ++G+++eA++ + +
  KOO24507.1 16 EEGRFAEAVDRFAE 29
                689*****999877 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 1.7
       TPR_7 20 elyeqsL.altkdpe 33
                 +ye+sL +++ + +
  KOO24507.1 61 NYYEESLeRIALERL 75
                599999988776665 PP

  == domain 3  score: 12.8 bits;  conditional E-value: 5.3e-05
       TPR_7   3 lnLarlysrlGdyeeAielyeqsLaltkdpe 33 
                 l+L+ + ++lG+++eA+++y+   +l+ +p+
  KOO24507.1  89 LALGIALEKLGRHSEAVKVYQL--GLEVEPS 117
                 69********************..9998886 PP

  == domain 4  score: -1.5 bits;  conditional E-value: 2
       TPR_7  17 eAielyeqsLaltkdpe 33 
                 +A+el+++   ++ d e
  KOO24507.1 218 NAAELHKE--NIAQDRE 232
                 68888888..5554443 PP

  == domain 5  score: -1.4 bits;  conditional E-value: 1.7
       TPR_7   3 lnLarlysrlGdyeeAie 20 
                   L +++++++ y++A +
  KOO24507.1 244 QHLESIRQERRLYQQARR 261
                 578999999999999965 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (894 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1149  (0.0640861); expected 358.6 (0.02)
Passed bias filter:                      520  (0.0290033); expected 358.6 (0.02)
Passed Vit filter:                        67  (0.00373696); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.73u 0.27s 00:00:01.00 Elapsed: 00:00:00.42
# Mc/sec: 6335.22
//
Query:       KOO24508.1  [L=373]
Description: hypothetical protein Ctob_002765 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0001   21.6   0.0    0.00019   20.8   0.0    1.4  1  EF-hand_5  EF hand
     0.0021   17.5   0.0     0.0043   16.5   0.0    1.4  1  EF-hand_1  EF hand
     0.0094   15.8   0.0      0.023   14.6   0.0    1.6  1  EF-hand_6  EF-hand domain
  ------ inclusion threshold ------
       0.17   12.3   0.0        0.3   11.6   0.0    1.3  1  EF-hand_7  EF-hand domain pair


Domain annotation for each model (and alignments):
>> EF-hand_5  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.8   0.0   4.3e-08   0.00019       4      22 ..      53      71 ..      49      74 .. 0.89

  Alignments for each domain:
  == domain 1  score: 20.8 bits;  conditional E-value: 4.3e-08
                HHHHH-SS-SSCE-HHHHH CS
   EF-hand_5  4 tFqaiDlNgDGkIskeELk 22
                ++++iD+NgDG I++ E+ 
  KOO24508.1 53 VLRMIDANGDGIIDRGEFI 71
                689**************95 PP

>> EF-hand_1  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.0   9.7e-07    0.0043       5      24 ..      53      72 ..      51      73 .. 0.90

  Alignments for each domain:
  == domain 1  score: 16.5 bits;  conditional E-value: 9.7e-07
                HHHHHTTTSSSEEEHHHHHH CS
   EF-hand_1  5 iFrefDkDgdGkIdfeEfke 24
                + r++D +gdG Id+ Ef++
  KOO24508.1 53 VLRMIDANGDGIIDRGEFIK 72
                679***************97 PP

>> EF-hand_6  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.6   0.0     5e-06     0.023       6      26 ..      54      74 ..      52      77 .. 0.88

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 5e-06
   EF-hand_6  6 FklfDkdgdGkidaeElrkal 26
                 +++D +gdG id+ E++ka 
  KOO24508.1 54 LRMIDANGDGIIDRGEFIKAH 74
                589***************986 PP

>> EF-hand_7  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   6.8e-05       0.3      48      69 ..      52      73 ..      33      75 .. 0.89

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 6.8e-05
   EF-hand_7 48 llfkefDtdkdGvisfdEFlkl 69
                ++++++D ++dG i++ EF k+
  KOO24508.1 52 RVLRMIDANGDGIIDRGEFIKA 73
                68999************99886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (373 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       576  (0.0321267); expected 358.6 (0.02)
Passed bias filter:                      404  (0.0225333); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.47u 0.26s 00:00:00.73 Elapsed: 00:00:00.41
# Mc/sec: 2698.60
//
Query:       KOO24509.1  [L=339]
Description: hypothetical protein Ctob_002764 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (339 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       526  (0.0293379); expected 358.6 (0.02)
Passed bias filter:                      452  (0.0252106); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.47u 0.25s 00:00:00.72 Elapsed: 00:00:00.42
# Mc/sec: 2442.81
//
Query:       KOO24510.1  [L=452]
Description: cyclopropane-fatty-acyl-phospholipid synthase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.1e-66  225.0   0.2    1.3e-66  224.7   0.2    1.1  1  CMAS             Mycolic acid cyclopropane synthetase
    9.7e-14   51.9   0.1    1.8e-13   51.0   0.1    1.5  1  Methyltransf_25  Methyltransferase domain
      1e-13   51.7   0.0      2e-13   50.8   0.0    1.5  1  Methyltransf_11  Methyltransferase domain
      1e-10   41.6   0.0    1.7e-10   40.9   0.0    1.3  1  Methyltransf_31  Methyltransferase domain
    6.5e-10   39.1   0.0    1.1e-09   38.4   0.0    1.3  1  Methyltransf_23  Methyltransferase domain
    5.8e-08   33.4   0.0    1.1e-07   32.5   0.0    1.5  1  Methyltransf_12  Methyltransferase domain
    8.9e-06   25.4   0.2    9.6e-05   22.0   0.0    2.1  2  DOT1             Histone methylation protein DOT1
    2.2e-05   24.0   0.0    4.3e-05   23.1   0.0    1.4  1  MTS              Methyltransferase small domain
     0.0043   16.7   0.0      0.007   16.0   0.0    1.3  1  MetW             Methionine biosynthesis protein MetW
  ------ inclusion threshold ------
      0.019   14.8   0.0      0.038   13.7   0.0    1.5  2  PCMT             Protein-L-isoaspartate(D-aspartate) O-methyl
      0.094   12.7   0.0       0.15   12.0   0.0    1.3  1  Methyltransf_32  Methyltransferase domain
      0.095   12.8   0.0       0.16   12.1   0.0    1.3  1  FtsJ             FtsJ-like methyltransferase
        0.1   11.9   0.0       0.19   11.1   0.0    1.4  1  Ubie_methyltran  ubiE/COQ5 methyltransferase family
       0.15   11.5   0.0       0.22   10.9   0.0    1.2  1  PrmA             Ribosomal protein L11 methyltransferase (Prm


Domain annotation for each model (and alignments):
>> CMAS  Mycolic acid cyclopropane synthetase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  224.7   0.2     1e-69   1.3e-66       6     273 .]     153     424 ..     148     424 .. 0.92

  Alignments for each domain:
  == domain 1  score: 224.7 bits;  conditional E-value: 1e-69
                 XHHHHHHHHTS-HHHHCTTS-TT---S----SSTT--HHHHHHHHHHHHHTTTT--TT-EEEEES-TTSHHHHHHHHHH--EEEEEES-HHHHHHHHHH CS
        CMAS   6 evenikahYDlsndffalfldptmtYsCAyferddmtLeeAqlaKldlileklelkpGmtlLdiGcGWGslvrraverydvkvvglTlSkeqaklakkr 104
                 ++++i+ hYD +ndff++fl+p+m Y+ A+++  d+tLe+Aq +Kl++++ek++lk+G+t LdiGcGWG+lvr+a++++ +k  g+TlS+e a++++++
  KOO24510.1 153 TAHEIADHYDRGNDFFNAFLGPKMIYTSAFYQGLDQTLEQAQVNKLNMLCEKVHLKEGQTFLDIGCGWGTLVRHAASKFKAKATGVTLSAEGAAWCRAQ 251
                 67899********************************************************************************************** PP

                 HHTS-SSS.-EEEEES-GGG---..--SEEEEES-GGGTSGGGHHHHHHHHHHHS-TT-EEEEEEEEE--HHHHHCTTCCCHHHHHHTSTTS---B.HH CS
        CMAS 105 vdeldler.kvevklldyedlde..kvdrvvsvgafehvgkenydtffkklkkllkedGllllhtitslhkkelaerglklkfidkeiFPgGelps.ie 199
                  ++++l++ + e++ +dy+++++  k+d++++v++ ehvg +n++ f   + ++lk++Gl+ ++    ++  + ++++    f++++iFPg    + + 
  KOO24510.1 252 AKKEGLSEvQCEILNCDYREIPKdrKFDAISAVEMAEHVGIANFQLFLGSVRSMLKDEGLFYMQVAGLRKGANWEDTQWG-LFMSRYIFPGADASTpLY 349
                 *****9873679*********9999***************************************9988887777755544.9********986543134 PP

                 HHHHHHHHTT-EEEEEEE-HHHHHHHHHHHHHHHHHTHHHHH.HHSHHHHHHHHHHHHHHHHHHHHTTSCEEEEE CS
        CMAS 200 eieeeiseagftvvdveslrahYakTLkaWaealqenkdeai.alvseevarmyelYLagcaeaFrkgyidvaql 273
                   +++ + agf+v +ve ++ hY +TL+aW+++ + nkd+   a +  +++r +el+La +  a   g++ ++q+
  KOO24510.1 350 WYIKQLELAGFEVHSVETVGRHYSHTLHAWYDNWMTNKDSPElASYPSRLKRLWELFLAWSTVAAGIGSATCYQI 424
                 44556999******************************98651569****************9999999999886 PP

>> Methyltransf_25  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.0   0.1   1.4e-16   1.8e-13       2      97 .]     214     310 ..     213     310 .. 0.96

  Alignments for each domain:
  == domain 1  score: 51.0 bits;  conditional E-value: 1.4e-16
                      EEET-TTSHHHHHHHCTSTSSEEEEEESSHHHHHHHHHHHHHTTT...TEEEEESBCCGBSSSTTTEEEEEEESTGGGSSHHHHHHHHHHHHHH CS
  Methyltransf_25   2 LdlGcGtGrltlalakrlgkakvtgvDiseemleaareraeeegl...nvefvqgdaedlpfedgsfDlvvssgalhhlsdedlekalkeiarv 92 
                      Ld+GcG G+l++++a ++ kak tgv +s+e  + +r++a++egl   ++e++++d +++p +d++fD++ ++ + +h+  ++ + +l  ++++
       KOO24510.1 214 LDIGCGWGTLVRHAASKF-KAKATGVTLSAEGAAWCRAQAKKEGLsevQCEILNCDYREIP-KDRKFDAISAVEMAEHVGIANFQLFLGSVRSM 305
                      9****************9.6**********************999988999**********.678*******999******************* PP

                      EEEEE CS
  Methyltransf_25  93 LkpgG 97 
                      Lk++G
       KOO24510.1 306 LKDEG 310
                      **998 PP

>> Methyltransf_11  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.8   0.0   1.6e-16     2e-13       1      95 [.     214     313 ..     214     314 .. 0.97

  Alignments for each domain:
  == domain 1  score: 50.8 bits;  conditional E-value: 1.6e-16
                      EEET-TTSHHHHHHHHTT.SEEEEEES-HHHHHHHHHHCCHHT-...EEEETTEECCCTSS-TT-EEEEEEES-CCC-..CCHHHHHHHHHHHE CS
  Methyltransf_11   1 LdvGcGtGrlaealakrg.arvvgvDlskemlklakekaseegl...kvefvvadaeklpfednsfDlvvssevlhhv..edpekalkeiaRvL 88 
                      Ld+GcG G l+++ a+++ a+ +gv ls+e  ++++++a++egl   ++e++ +d +++p +d +fD++ + e+ +hv  ++ + +l  ++ +L
       KOO24510.1 214 LDIGCGWGTLVRHAASKFkAKATGVTLSAEGAAWCRAQAKKEGLsevQCEILNCDYREIP-KDRKFDAISAVEMAEHVgiANFQLFLGSVRSML 306
                      8**************8888**************************999999********9.899****************************** PP

                      EEEEEEE CS
  Methyltransf_11  89 kpgGllv 95 
                      k +Gl++
       KOO24510.1 307 KDEGLFY 313
                      *****97 PP

>> Methyltransf_31  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.9   0.0   1.3e-13   1.7e-10       2     111 ..     208     316 ..     207     337 .. 0.89

  Alignments for each domain:
  == domain 1  score: 40.9 bits;  conditional E-value: 1.3e-13
  Methyltransf_31   2 dkglrvlDlGCGtGeltfelaeelgpkaevvGiDiseeaielArenaqklgldnveFeq..gdieeleklledekfDlilsnevl..naladpd 91 
                      ++g ++lD+GCG G+l+  +a++  +ka+ +G+  s+e    +r+ a+k gl++v+ e+  +d  e++k   d+kfD i + e      +a+ +
       KOO24510.1 208 KEGQTFLDIGCGWGTLVRHAASK--FKAKATGVTLSAEGAAWCRAQAKKEGLSEVQCEIlnCDYREIPK---DRKFDAISAVEMAehVGIANFQ 296
                      567899***************77..5899************************665555559******6...6********999999999**** PP

  Methyltransf_31  92 kileeiervlkpggillied 111
                       +l+++ + lk++g + ++ 
       KOO24510.1 297 LFLGSVRSMLKDEGLFYMQV 316
                      ****************9985 PP

>> Methyltransf_23  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.4   0.0   8.3e-13   1.1e-09      13     164 ..     198     364 ..     186     365 .. 0.69

  Alignments for each domain:
  == domain 1  score: 38.4 bits;  conditional E-value: 8.3e-13
  Methyltransf_23  13 lerllpk..lraggrvLdiGcGtGillevlrengf.svtgvDlspeaveiae.........kakkaqkdqfdeqeaae.........pqgkfdl 85 
                      l+ l +k  l++g+  LdiGcG G+l ++++ +++ + tgv ls e  ++ +         + ++                      +++kfd 
       KOO24510.1 198 LNMLCEKvhLKEGQTFLDIGCGWGTLVRHAASKFKaKATGVTLSAEGAAWCRaqakkeglsEVQCE-----------IlncdyreipKDRKFDA 280
                      44455555578999****************776666********9877776544443333322222...........0334444554899**** PP

  Methyltransf_23  86 Ivlrevlehvp..dppellrqiatllkpgGylllseplasl....kedrllldw.lyl...vpagrhisffsarslkelleeaGlevve 164
                      I++ e+ ehv   ++   l +++++lk++G+++ ++ + +     + +++ l + +y+   ++a++ ++++      ++le aG+ev++
       KOO24510.1 281 ISAVEMAEHVGiaNFQLFLGSVRSMLKDEGLFYMQVAGLRKganwEDTQWGLFMsRYIfpgADASTPLYWYI-----KQLELAGFEVHS 364
                      **********999***********************755432211444444444334333344445556665.....777777777775 PP

>> Methyltransf_12  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.5   0.0   8.7e-11   1.1e-07       1      98 [.     214     311 ..     214     312 .. 0.88

  Alignments for each domain:
  == domain 1  score: 32.5 bits;  conditional E-value: 8.7e-11
  Methyltransf_12   1 LeiGcGtGsllralleklpdieytgvDispsaiedakeklakrennnnnnvelealdlldldggssfDlvvasnvlhhl..kdirevldnirkl 92 
                      L+iGcG G+l+r+ + k   ++ tgv +s++   +  +  ak+e+++  ++e+ ++d  + ++  +fD++ a +  +h+  ++ + +l ++r++
       KOO24510.1 214 LDIGCGWGTLVRHAASK-FKAKATGVTLSAEGA-AWCRAQAKKEGLSEVQCEILNCDYREIPKDRKFDAISAVEMAEHVgiANFQLFLGSVRSM 305
                      8****************.789999*******99.5555556666678888888888887777779***************************** PP

  Methyltransf_12  93 LkpgGr 98 
                      Lk++G 
       KOO24510.1 306 LKDEGL 311
                      ****97 PP

>> DOT1  Histone methylation protein DOT1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.9   0.0      0.22   2.8e+02      80     115 ..      70     105 ..      60     119 .. 0.77
   2 !   22.0   0.0   7.5e-08   9.6e-05      28      87 ..     195     253 ..     183     272 .. 0.88

  Alignments for each domain:
  == domain 1  score: 0.9 bits;  conditional E-value: 0.22
                 HHHHHHHHHHHHHHHHTTB----EEEESS-STT-HH CS
        DOT1  80 elaekqkeelkkrlklfGkklakiefirksFvenek 115
                 +  +  +  + k ++ +Gk++ +++    +F+++++
  KOO24510.1  70 DTKKYLEFKNAKVAAKWGKNKIPMHILVAEFLNDNV 105
                 4444555566788999****************9986 PP

  == domain 2  score: 22.0 bits;  conditional E-value: 7.5e-08
                 HHHHHHHHHHTT--TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE--HHHHHHHHHHHH CS
        DOT1  28 peflsevldkvnlkkedvFvDLGSGvGnvvlqaalevgcklsvGvEimdnaselaekqke 87 
                 ++ l+ + +kv+lk+ ++F+D+G G G +v  aa +++ k ++Gv ++ + ++  ++q++
  KOO24510.1 195 VNKLNMLCEKVHLKEGQTFLDIGCGWGTLVRHAASKFKAK-ATGVTLSAEGAAWCRAQAK 253
                 56678899******************************99.99**999988887776654 PP

>> MTS  Methyltransferase small domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.1   0.0   3.4e-08   4.3e-05      22     101 ..     200     281 ..     197     314 .. 0.88

  Alignments for each domain:
  == domain 1  score: 23.1 bits;  conditional E-value: 3.4e-08
                 HHHHHCHCCTCSEEEEET-TTSHHHHHHHHHTTC.EEEEEESBHHHHHHHHHHHHHTTGC...EEEEE-STTTTSTTS-EEEE CS
         MTS  22 lLletlpkelsgkvlDlGcGaGvlgaalakespeaevtlvdvdarAlesakenleankle...vevvasdvleeveekkfdli 101
                 +L e+++ ++ ++ lD+GcG+G l  ++a++ +  + t v  +a+  + +++ +++++l+   +e++++d  e  +++kfd+i
  KOO24510.1 200 MLCEKVHLKEGQTFLDIGCGWGTLVRHAASKFKA-KATGVTLSAEGAAWCRAQAKKEGLSevqCEILNCDYREIPKDRKFDAI 281
                 5667777777899***********9999997766.789999999999999999999998888899****************98 PP

>> MetW  Methionine biosynthesis protein MetW
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.0   5.5e-06     0.007      11      77 ..     207     279 ..     198     286 .. 0.76

  Alignments for each domain:
  == domain 1  score: 16.0 bits;  conditional E-value: 5.5e-06
        MetW  11 ikpgsrvldlGcGdGellellkeekqvdgrGleldeegvaecvak....Glsviqgdl.dkdlenf.edksfd 77 
                 +k+g + ld+GcG G+l++  + + + ++ G+ l++eg a c a+    Gls +q ++ + d  +  +d++fd
  KOO24510.1 207 LKEGQTFLDIGCGWGTLVRHAASKFKAKATGVTLSAEGAAWCRAQakkeGLSEVQCEIlNCDYREIpKDRKFD 279
                 5789999*******************************99887642233777776664244544431455566 PP

>> PCMT  Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.0     3e-05     0.038      50     127 ..     184     261 ..     154     291 .. 0.73
   2 ?   -4.1   0.0       8.6   1.1e+04      78      94 ..     414     430 ..     396     431 .. 0.78

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 3e-05
                 EETTEEE--HHH..HHHHHHHTT--TT-EEEEES-TTSHHHHHHHHHHCTTCEEEEEESBHHHHHHHHHHHHHCTTCSEE CS
        PCMT  50 igynatiSaphm..valalellelkkgarvLevGsGsGyltavlarlvgekgrvvsierikelveeakrnlkkldlenvi 127
                  g ++t  + ++    +++e ++lk+g+  L++G+G G l    a  +++k+   ++  ++e ++  +++ kk++l++v+
  KOO24510.1 184 QGLDQTLEQAQVnkLNMLCEKVHLKEGQTFLDIGCGWGTLVRHAASKFKAKA--TGVTLSAEGAAWCRAQAKKEGLSEVQ 261
                 4566666554431167999*****************9988877777777766..66666666666666666777766655 PP

  == domain 2  score: -4.1 bits;  conditional E-value: 8.6
                 EEES-TTSHHHHHHHHH CS
        PCMT  78 LevGsGsGyltavlarl 94 
                   +Gs + y+ ++  ++
  KOO24510.1 414 AGIGSATCYQIVCHKNM 430
                 46899999999987765 PP

>> Methyltransf_32  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   0.00012      0.15       5      75 ..     194     256 ..     191     293 .. 0.80

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 0.00012
  Methyltransf_32   5 everlaelvakllkelakesgaltvvDvGaGkgYLsfvlalkekeyklkvvgidakeelvekaekraeklg 75 
                      +v++l  l++k+       ++ +t +D+G+G g L +  a+   ++k k +g+ +++e ++ +++ a+k g
       KOO24510.1 194 QVNKLNMLCEKVHL-----KEGQTFLDIGCGWGTLVRHAAS---KFKAKATGVTLSAEGAAWCRAQAKKEG 256
                      77777777777444.....46799*****************...999***********9999999999877 PP

>> FtsJ  FtsJ-like methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   0.00012      0.16       8      77 ..     197     271 ..     194     308 .. 0.80

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 0.00012
                 HHHHHHHHHT-S-TT-EEEECT-TTSHHHHHHCCT.T.-SEEEEEESSSS........HHHTTEEEECS-CCCSSHHH CS
        FtsJ   8 KLleidekfklfkpgktvvDlgaaPGgwsqvllqrlgakgkvvavDlqpm........aplpgvttiqgditdpetie 77 
                 KL  + ek++ +k+g+t++D+g++ G     ++ +++  +k  +v+l           a+ +g++ +q+ i++ + +e
  KOO24510.1 197 KLNMLCEKVH-LKEGQTFLDIGCGWGTLVRHAASKFK--AKATGVTLSAEgaawcraqAKKEGLSEVQCEILNCDYRE 271
                 999999****.9***********************85..689999996555777776444478888888887765555 PP

>> Ubie_methyltran  ubiE/COQ5 methyltransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   0.00015      0.19      40     120 ..     202     281 ..     188     314 .. 0.70

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00015
                      HHH--S--TTEEEEES-TT-HHHHHHHHHHHHHHEEEEEES-HHHHHHHHHHHHHHTSS..TEEEEE--TTT-TTS-T-EEEE CS
  Ubie_methyltran  40 eklvavkrgakvlDvagGtgDlafklsdsvgekgkvvvlDinenmLkvgekklkeegki..nieflqanaeeLpfeddsfDvv 120
                       + v  k+g+++lD+ +G g l  + +++ ++  k +++ ++++     ++++k+eg +  + e l+ +  e+p +   fD +
       KOO24510.1 202 CEKVHLKEGQTFLDIGCGWGTLVRHAASKFKA--KATGVTLSAEGAAWCRAQAKKEGLSevQCEILNCDYREIPKD-RKFDAI 281
                      4556779************9776555444433..667888999999999999999999944556777777777754.456654 PP

>> PrmA  Ribosomal protein L11 methyltransferase (PrmA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   0.00017      0.22     158     238 ..     205     289 ..     188     315 .. 0.71

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00017
        PrmA 158 l.vkegeevlDvGtGSGiLai.aaakLgakkvvavDiDevAvkvakeNaelNkvea.kleval..seellkeekadvivaNILaev 238
                 + +keg+++lD+G+G G L   aa+k+ a k+++v +        ++ a++ ++++ ++e+ +   +e++k++k+d i a  +ae 
  KOO24510.1 205 VhLKEGQTFLDIGCGWGTLVRhAASKFKA-KATGVTLSAEGAAWCRAQAKKEGLSEvQCEILNcdYREIPKDRKFDAISAVEMAEH 289
                 3378999**********997526667666.67899888888888888888888888777774222578888999999988777765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (452 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       477  (0.0266049); expected 358.6 (0.02)
Passed bias filter:                      415  (0.0231469); expected 358.6 (0.02)
Passed Vit filter:                        58  (0.00323498); expected 17.9 (0.001)
Passed Fwd filter:                        14  (0.000780858); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              14  [number of targets reported over threshold]
# CPU time: 0.53u 0.23s 00:00:00.76 Elapsed: 00:00:00.40
# Mc/sec: 3387.39
//
Query:       KOO24511.1  [L=552]
Description: hypothetical protein Ctob_002766 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.038   13.9   4.1       0.83    9.7   0.1    3.2  3  MORN      MORN repeat


Domain annotation for each model (and alignments):
>> MORN  MORN repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.4   0.1    0.0022        39       1      16 [.      20      35 ..      20      41 .. 0.89
   2 ?    9.7   0.1   4.6e-05      0.83       4      23 .]      50      69 ..      50      69 .. 0.93
   3 ?   -2.0   0.1      0.24   4.2e+03       4       8 ..      73      77 ..      71      79 .. 0.52

  Alignments for each domain:
  == domain 1  score: 4.4 bits;  conditional E-value: 0.0022
        MORN  1 YeGeWknGkrhGkGvy 16
                YeG  ++  rhG G++
  KOO24511.1 20 YEGRVHDEERHGLGTL 35
                99999999******98 PP

  == domain 2  score: 9.7 bits;  conditional E-value: 4.6e-05
        MORN  4 eWknGkrhGkGvytwpdGdr 23
                +W+++ +hG G ++ pdG+r
  KOO24511.1 50 TWRHDVPHGVGSLVEPDGGR 69
                5*************999987 PP

  == domain 3  score: -2.0 bits;  conditional E-value: 0.24
        MORN  4 eWknG 8 
                +W +G
  KOO24511.1 73 HWYDG 77
                55555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (552 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       390  (0.0217525); expected 358.6 (0.02)
Passed bias filter:                      261  (0.0145574); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.54u 0.25s 00:00:00.79 Elapsed: 00:00:00.42
# Mc/sec: 3936.31
//
Query:       KOO24512.1  [L=297]
Description: hypothetical protein Ctob_002763 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (297 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       330  (0.0184059); expected 358.6 (0.02)
Passed bias filter:                      252  (0.0140554); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.40u 0.24s 00:00:00.64 Elapsed: 00:00:00.38
# Mc/sec: 2339.83
//
Query:       KOO24513.1  [L=1273]
Description: phosphoglycolate phosphatase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
      1e-18   68.0   0.0    2.5e-18   66.8   0.0    1.7  1  HAD_2           Haloacid dehalogenase-like hydrolase
    9.1e-07   28.9   0.1    2.7e-06   27.3   0.1    1.9  1  Hydrolase_like  HAD-hyrolase-like
      3e-05   24.4   1.3      3e-05   24.4   1.3    4.2  3  Hydrolase       haloacid dehalogenase-like hydrolase
    6.7e-05   23.4   0.0    6.7e-05   23.4   0.0    4.3  4  HAD             haloacid dehalogenase-like hydrolase
     0.0008   19.0   1.4     0.0016   18.0   1.4    1.4  1  LRRFIP          LRRFIP family
  ------ inclusion threshold ------
       0.62    9.0   8.4       0.03   13.4   2.7    1.7  2  MT              Microtubule-binding stalk of dynein motor
          1    9.6   5.0       0.73   10.1   0.0    3.0  3  DUF1400         Alpha/beta hydrolase of unknown function (DUF
        2.3    6.8   3.8        3.6    6.1   3.8    1.3  1  AAA_13          AAA domain
        4.4    7.4   8.1        1.2    9.1   1.5    3.4  3  IQ              IQ calmodulin-binding motif


Domain annotation for each model (and alignments):
>> HAD_2  Haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.8   0.0   1.3e-21   2.5e-18       1     178 []    1040    1228 ..    1040    1228 .. 0.86

  Alignments for each domain:
  == domain 1  score: 66.8 bits;  conditional E-value: 1.3e-21
       HAD_2    1 iiFDlDgTlldteeliiqafnelleeyglselseeelrkliglslrellr.klgeseeeee...kieellrkyneekkkkevkpydgvkelLeeLke 93  
                  +++D+DgTl+ +++l ++a+ne+l + g + ++ ++++     ++ e ++ +lg  e  ee   + + + ++y+++  k++  +++g++ lL +++ 
  KOO24513.1 1040 VLWDVDGTLVESTKLAFDATNEVLTSSGAKAVTVDDYKIGCRYTTPERFNfHLGLPEGSEEgarLGAIFDETYVKRVSKETAGLFPGLERLLRSIAL 1136
                  79*************************99977777776665555555555133333333337878888889999999999999************** PP

       HAD_2   94 agyklgivTsksreaveekleqlgies.......yFdvivtsedvekkKPdpeviekaleklklkkeeviyvGDsptDieaakkagikviav 178 
                  +g+  g  ++   + v+  ++++++++       +F   +++++v   KP+++ ++  +++l++ ++  +yvGDsp D +aa++ag+k+i+v
  KOO24513.1 1137 NGHPQGALSNACGAYVRAVMTANELDEvpgqrmaLFRCALGADEVPAAKPAADGLLVGCKQLGIVPATSVYVGDSPGDGKAARAAGMKSIGV 1228
                  **************999999999998633333337******************************************************987 PP

>> Hydrolase_like  HAD-hyrolase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.3   0.1   1.4e-09   2.7e-06       3      72 ..    1184    1249 ..    1182    1252 .. 0.87

  Alignments for each domain:
  == domain 1  score: 27.3 bits;  conditional E-value: 1.4e-09
                      STTSSHHHHHHHHHH---GGGEEEEES-TTTHHHHHHHCT-EEEEESSSSS-TTTHHHHHHHHT---SEE CS
  Hydrolase_like    3 gKPepemydfalevlgsdpeevlmiGDrlatDiagAnnaGwksvLVltGvtrpedleepehkptyvaddl 72  
                       KP++  +    ++lg+ p+ ++++GD+   D ++A++aG+ks+ Vl G++++++l     + ++ +dd+
      KOO24513.1 1184 AKPAADGLLVGCKQLGIVPATSVYVGDS-PGDGKAARAAGMKSIGVLWGANSEAKLT---GEFDVLVDDV 1249
                      588888888889999*************.9*********************998866...5667777776 PP

>> Hydrolase  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   0.6      0.67   1.3e+03      26     122 ..     434     538 ..     363     545 .. 0.70
   2 ?   -3.5   3.5       5.3   1.1e+04      22      22 ..     760     760 ..     620     853 .. 0.57
   3 !   24.4   1.3   1.5e-08     3e-05       4     210 .]    1040    1222 ..    1039    1222 .. 0.78

  Alignments for each domain:
  == domain 1  score: -0.6 bits;  conditional E-value: 0.67
                 H.....CHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHETTTE..........HHHHTHHHHHHHHHCHHHHHHHHHHHHHHCHHHHHHTTHHHH CS
                 x.....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..........xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   Hydrolase  26 a.....alalaaaletgsehpigkalvaaakarsgaltgfatfigrg..........ayaigkpewltaldippdlgaaigsaqsqgrtvallqarala 109
                 +     a++laa le+   +   +a +aa++ r++   g+ +   rg          a+++ k   l++    + lg+ i +aq++    a +  r la
  KOO24513.1 434 VlcmleARKLAATLEIDKVRAEVAASAAACEVRWEIEWGWSE--ARGgvralqalrsALLRFKHTRLERR-KQEALGNCIITAQAAVSARAGK--RTLA 527
                 044446788899999988888888888888888544444444..33334555555553333333333333.3446666677777777777777..7777 PP

                 HHHHHHTHHBHTT CS
                 xxxxxxxxxxxxx RF
   Hydrolase 110 vftiadplkvkpe 122
                 +++ a +  +  e
  KOO24513.1 528 EIAGARE--LLGE 538
                 7777776..6555 PP

  == domain 2  score: -3.5 bits;  conditional E-value: 5.3
                 H CS
                 x RF
   Hydrolase  22 v 22 
                 +
  KOO24513.1 760 T 760
                 1 PP

  == domain 3  score: 24.4 bits;  conditional E-value: 1.5e-08
                  EEEESBTTTBCHHHHHHHHHHHHCHHHHHHHHHHHHCHHHHHH.HHHHHHHHHHHHHHHHETTTEHHHHTHHHHHHHHHCHHHHHHHHHHHHHHCHH CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   Hydrolase    4 vvfDkdGTLttgepsvedvivsaalalaaaletgsehpigkal.vaaakarsgaltgfatfigrgayaigkpewltaldippdlgaaigsaqsqgrt 99  
                  v++D+dGTL+++++   d+++++                   l    aka+               y ig +  + +  ++ +lg   gs++++   
  KOO24513.1 1040 VLWDVDGTLVESTKLAFDATNEV-------------------LtSSGAKAV------TVD-----DYKIGCRYTTPER-FNFHLGLPEGSEEGARLG 1105
                  799*******9999999999999...................222333333......333.....4555555444444.55558999999999**** PP

                  HHHHTTHHHHHHHHHHTHHBHTTHHHHHHHHHHTTEEEEEEESSEHHHHH..HHHHHTT......GGGESEEEEHHCESSTTTSHHHHHHHHHHHTS CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxx......xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   Hydrolase  100 vallqaralavftiadplkvkpeaaeavasLkaagievvlltgdnpetae..raanqlG......ddyfdaviasdietvakpspegkvaaireLqg 188 
                  ++++  + +     +++  ++p+++ +++s+  +g + + l++   + ++   +an+l+      +  f   +++d++  akp  +g++  +++L++
  KOO24513.1 1106 AIFD--ETYVKRVSKETAGLFPGLERLLRSIALNGHPQGALSNACGAYVRavMTANELDevpgqrMALFRCALGADEVPAAKPAADGLLVGCKQLGI 1200
                  ****..5555555555555******************999996655444422467778899999888889999999999****************** PP

                  TGGGEEEEESSHHHHHHHHHTT CS
                  xxxxxxxxxxxxxxxxxxxxxx RF
   Hydrolase  189 kpeevamVGDgvnDaaalaaAg 210 
                   p+  + VGD++ D +a++aAg
  KOO24513.1 1201 VPATSVYVGDSPGDGKAARAAG 1222
                  *********************8 PP

>> HAD  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   1.9       2.4   4.8e+03      31      99 ..      58     120 ..      12     125 .. 0.47
   2 ?    0.3   1.2      0.39   7.8e+02      29      90 ..     206     265 ..     190     303 .. 0.46
   3 ?   -2.4   0.5       2.7   5.4e+03      48      78 ..     764     797 ..     743     811 .. 0.72
   4 !   23.4   0.0   3.4e-08   6.7e-05       1     188 []    1040    1219 ..    1040    1219 .. 0.70

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 2.4
         HAD  31 wralreklllal..frellrldraglaelleallaglseelaaelerfvaevirpklldp.galellaahra 99 
                 +ral + ++ ++    +++++   +la+ +e +  g++   a  ler +          + ga ++l+++r+
  KOO24513.1  58 RRALGVSARFQRrlELTISERPPHDLAREMELIAYGFPSGYATKLERRR--------R-EnGAATVLQCCRR 120
                 2222222222222222333333334444444444444433333333333........3.4477777775554 PP

  == domain 2  score: 0.3 bits;  conditional E-value: 0.39
         HAD  29 rlwralreklllalfrellrldraglaelleallaglseelaaelerfvaevirpklldpga 90 
                 r+w+alr    +  +r +l   r+++    +a+ + l+ +la++ ++++ +++ pk+l   a
  KOO24513.1 206 RRWAALRSCVSEVKLR-MLAATRLQCLTRTRAAVRLLRSRLAEQRGQAL-HKQVPKALADAA 265
                 4466666664444422.22222444444444444444444444444444.222222111111 PP

  == domain 3  score: -2.4 bits;  conditional E-value: 2.7
         HAD  48 rldraglaelleallaglseelaaelerfv...a 78 
                 r++  +++e+lea+la  +++ ++e+e++    a
  KOO24513.1 764 RQEMHDKMEQLEAALATATAAAEKEAEEAEkaeA 797
                 4566788888888888888888888888774321 PP

  == domain 4  score: 23.4 bits;  conditional E-value: 3.4e-08
         HAD    1 alfDfDgTLldgdslelllrfllrrgaprlwralreklllalfrellrldraglaelleallagls..eelaaelerfvaevirpk.......lldp 88  
                  +l+D+DgTL+ +  l + +++ + +        +++ +  ++   + ++          +++ gl+   e  a+l+++++e + ++       l+ p
  KOO24513.1 1040 VLWDVDGTLVESTKLAFDATNEVLT-----SSGAKAVTVDDYKIGCRYT---T--PERFNFHLGLPegSEEGARLGAIFDETYVKRvsketagLF-P 1125
                  79**********7777655545544.....3344444444441112222...1..2223344444434566677777776666666666665556.* PP

         HAD   89 galellaahraaGdrvvvvSgglrplvepllaelgadevlatelevddrltgelglegkpvrgegkvaalrewlaaegegidleevvayGDspsDlp 185 
                  g+ +ll+  + +G+++  +S++   +v++++ +   dev +       r+       g +   ++k+aa     + +  gi ++++v++GDsp+D +
  KOO24513.1 1126 GLERLLRSIALNGHPQGALSNACGAYVRAVMTANELDEVPGQ------RMALFRCALGADEVPAAKPAADGLLVGCKQLGIVPATSVYVGDSPGDGK 1216
                  *******888*********************76668888888......455554477777777777777777789999*****************88 PP

         HAD  186 llr 188 
                  ++r
  KOO24513.1 1217 AAR 1219
                  886 PP

>> LRRFIP  LRRFIP family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.0   1.4   7.9e-07    0.0016     192     281 ..     727     813 ..     684     815 .. 0.85

  Alignments for each domain:
  == domain 1  score: 18.0 bits;  conditional E-value: 7.9e-07
      LRRFIP 192 keeesssssksalvskeaaellesagegtldvrLkklaeekeeLleeveklkqqleeekskksssasseelegeeeendleiqreankli 281
                 +++ s+ s+k+a v+++ a+ l ++     d rL +  ee++e+ +++e+l++ l+  +  ++++a++ e+ ++e e++  + ++a++++
  KOO24513.1 727 SAAISAGSAKAAFVAADLASQLTRV---KVDLRLVQTTEERQEMHDKMEQLEAALATATAAAEKEAEEAEKAEAEAEAEARVPEDAQRQV 813
                 4556677788888888888877777...9******************************9999999999888888888899999999886 PP

>> MT  Microtubule-binding stalk of dynein motor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.2   0.3       3.2   6.4e+03     222     243 ..     628     649 ..     625     653 .. 0.83
   2 ?   13.4   2.7   1.5e-05      0.03     230     290 ..     757     819 ..     740     850 .. 0.83

  Alignments for each domain:
  == domain 1  score: -4.2 bits;  conditional E-value: 3.2
          MT 222 alekanaelaaaqeklaaikak 243
                 a+ +a+a++aaa+ek  +i+ +
  KOO24513.1 628 AIAEATAQIAAAKEKDETIRLQ 649
                 789999******9998888765 PP

  == domain 2  score: 13.4 bits;  conditional E-value: 1.5e-05
          MT 230 laaaqeklaaikakiaelnanlaeltaafekatadklkcqqeaeatartislanrlvgg..la 290
                 l ++ e    +++k+ +l+a la  taa ek + +  k + eaea ar+   a+r vgg  la
  KOO24513.1 757 LVQTTEERQEMHDKMEQLEAALATATAAAEKEAEEAEKAEAEAEAEARVPEDAQRQVGGgvLA 819
                 555667788999*********************************************984444 PP

>> DUF1400  Alpha/beta hydrolase of unknown function (DUF1400)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.0   0.00037      0.73      46     112 ..     125     190 ..     108     196 .. 0.87
   2 ?   -0.1   0.3      0.52     1e+03      44     106 ..     268     334 ..     237     339 .. 0.54
   3 ?   -2.5   0.1       2.9   5.8e+03      69     106 ..     763     784 ..     746     790 .. 0.55

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.00037
     DUF1400  46 reelreaLqaeiklspvllsqllnspigeklLerlgeviqtesdqngkealrsAlilaaadpeglsl 112
                 +  + + Lq + ++s +++++ ++s++ ++ L  +++v++ +++ +++ alr+  ++a+ +pe +++
  KOO24513.1 125 EGRVAKRLQLRREVSAQTIQKWWRSRQLRRPLAAMANVVSDTTR-DTTLALRGKAVRASPKPEAIQM 190
                 5678899*********************************7755.569********99999998876 PP

  == domain 2  score: -0.1 bits;  conditional E-value: 0.52
     DUF1400  44 eqreelreaLqaeiklspvllsqll.n.spigeklLerlgeviqte..sdqngkealrsAlilaaad 106
                 + ++ + + L  +  l ++++++l  +  +   +lL+ l+ ++  +  s +    alr Al +++a 
  KOO24513.1 268 HLQRMVHDHLAMNQLLHSQFTERLAwYsDSRLAALLRPLAAAVAARrlSVRMRSRALRHALGESLAA 334
                 3333333333333334444444432121234556777777777777443445558888888877776 PP

  == domain 3  score: -2.5 bits;  conditional E-value: 2.9
     DUF1400  69 nspigeklLerlgeviqtesdqngkealrsAlilaaad 106
                 + + +                 +++e+l++Al +a a 
  KOO24513.1 763 ERQEMH----------------DKMEQLEAALATATAA 784
                 222222................4457777777766654 PP

>> AAA_13  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.1   3.8    0.0018       3.6     387     448 ..     743     801 ..     621     814 .. 0.83

  Alignments for each domain:
  == domain 1  score: 6.1 bits;  conditional E-value: 0.0018
      AAA_13 387 nleeekeeakkklelhlveeleseldeykkkykklekaieklekelkeeeaelkkleeeike 448
                 +l+++ +++k++l+l  v+  ++e +e+++k+++le+a+  +++++++e++e++k+e+e+++
  KOO24513.1 743 DLASQLTRVKVDLRL--VQ-TTEERQEMHDKMEQLEAALATATAAAEKEAEEAEKAEAEAEA 801
                 445555555555555..44.55777999***************************9999865 PP

>> IQ  IQ calmodulin-binding motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.0       2.3   4.6e+03       3       9 ..     111     117 ..     110     120 .. 0.89
   2 ?    9.1   1.5   0.00062       1.2       3      18 ..     139     154 ..     137     154 .. 0.90
   3 ?   -0.5   0.2      0.77   1.5e+03       3      13 ..     224     234 ..     223     241 .. 0.85

  Alignments for each domain:
  == domain 1  score: -2.0 bits;  conditional E-value: 2.3
                 HHHHHHH CS
          IQ   3 aaikIQa 9  
                 aa+++Q+
  KOO24513.1 111 AATVLQC 117
                 9*****8 PP

  == domain 2  score: 9.1 bits;  conditional E-value: 0.00062
                 HHHHHHHHHHHHHHHH CS
          IQ   3 aaikIQaawRGylaRk 18 
                 +a +IQ++wR  + R+
  KOO24513.1 139 SAQTIQKWWRSRQLRR 154
                 7899*******99997 PP

  == domain 3  score: -0.5 bits;  conditional E-value: 0.77
                 HHHHHHHHHHH CS
          IQ   3 aaikIQaawRG 13 
                 aa+++Q+  R 
  KOO24513.1 224 AATRLQCLTRT 234
                 89****99885 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1273 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1613  (0.089966); expected 358.6 (0.02)
Passed bias filter:                      678  (0.0378158); expected 358.6 (0.02)
Passed Vit filter:                        80  (0.00446204); expected 17.9 (0.001)
Passed Fwd filter:                        14  (0.000780858); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 1.02u 0.32s 00:00:01.34 Elapsed: 00:00:00.47
# Mc/sec: 8167.87
//
Query:       KOO24514.1  [L=512]
Description: c2 domain containing protein, partial [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    8.5e-36  122.4   0.0      2e-17   63.4   0.0    2.3  2  C2               C2 domain
      2e-24   85.3   7.7    5.7e-12   45.5   1.8    3.3  3  WW               WW domain
    0.00015   22.1   0.3       0.57   10.6   0.0    2.6  2  Cu_amine_oxidN3  Copper amine oxidase, N3 domain
  ------ inclusion threshold ------
       0.26   10.8   1.3         21    4.6   0.1    2.4  2  MbtH             MbtH-like protein
        1.2    9.2   4.5         17    5.6   0.5    2.5  2  RcnB             Nickel/cobalt transporter regulator


Domain annotation for each model (and alignments):
>> C2  C2 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.8   0.0   6.3e-19   2.3e-15       1      94 [.      66     161 ..      66     169 .. 0.93
   2 !   63.4   0.0   5.5e-21     2e-17       1      96 [.     303     398 ..     303     405 .. 0.89

  Alignments for each domain:
  == domain 1  score: 56.8 bits;  conditional E-value: 6.3e-19
                 TEEEEEEEEEESSSSSSTTSSCEEEEEEEEECEEEEEE-SCSSSSSSEEEEEEEEEESC..HTTSEEEEEEEEECSS.STEEEEEEEEEEGHHHHTT CS
          C2   1 gklevtvieAknLpnkdkkgssdpyvkvsldgkqkakTrviknslnPvWnekftfevae..leeakLeveVfdndrl.skddfiGkveiplstllsg 94 
                 g+l+v+  +A +L  +d +g sdp+vk++l gk+++k++++++slnP+W++++ f   +  l +  L+v+ +dndrl  ++d +G   i+l++l+ g
  KOO24514.1  66 GSLRVHLSHAIGLRSMDSNGYSDPFVKLTL-GKETHKSEIVRKSLNPRWDKDYFFRGGFeqLVTLPLQVHAWDNDRLsIRNDPLGSGLIDLRQLDLG 161
                 689***************************.************************87777899999**********889999*********998766 PP

  == domain 2  score: 63.4 bits;  conditional E-value: 5.5e-21
                 TEEEEEEEEEESSSSSSTTSSCEEEEEEEEECEEEEEE-SCSSSSSSEEEEEEEE..EESCHTTSEEEEEEEEECSSSTEEEEEEEEEEGHHHHTTHH CS
          C2   1 gklevtvieAknLpnkdkkgssdpyvkvsldgkqkakTrviknslnPvWnekftf..evaeleeakLeveVfdndrlskddfiGkveiplstllsgee 96 
                 g+l++   +A++L  +d +g sdpyvk sl   + +kT+vi ++lnP W+e ftf   +++l ++ L ++++d+d+l++++ +G+++++l  l++++ 
  KOO24514.1 303 GTLHLFLSHARDLMSMDSNGFSDPYVKFSL-AGKEVKTKVIYKNLNPNWSEVFTFtgVLKDLIAEPLSLRCKDKDTLTSNK-LGEASVDLGGLARTRM 398
                 57888999**********************.************************755555***************87777.*******998776655 PP

>> WW  WW domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.5   1.8   1.6e-15   5.7e-12       1      31 []      10      40 ..      10      40 .. 0.99
   2 !   41.4   0.5   3.1e-14   1.1e-10       1      31 []     229     259 ..     229     259 .. 0.99
   3 ?   -1.4   0.0      0.73   2.6e+03       1      12 [.     346     357 ..     346     359 .. 0.79

  Alignments for each domain:
  == domain 1  score: 45.5 bits;  conditional E-value: 1.6e-15
                X-TTEEEEE-TTTT-EEEEETTT--EESS-- CS
          WW  1 LPpGWeeqwdpdsGrvYYyNheTgetqWekP 31
                LP+GW+e++d++sG++YYy+  T+etqW++P
  KOO24514.1 10 LPAGWREVKDATSGKTYYYHAPTKETQWVRP 40
                8*****************************9 PP

  == domain 2  score: 41.4 bits;  conditional E-value: 3.1e-14
                 X-TTEEEEE-TTTT-EEEEETTT--EESS-- CS
          WW   1 LPpGWeeqwdpdsGrvYYyNheTgetqWekP 31 
                 LP+GW+e+++++sG+ YYy+  T++tqW++P
  KOO24514.1 229 LPAGWREVKSATSGKMYYYHAPTKKTQWVRP 259
                 8*****************************9 PP

  == domain 3  score: -1.4 bits;  conditional E-value: 0.73
                 X-TTEEEEE-TT CS
          WW   1 LPpGWeeqwdpd 12 
                 L p W e+++ +
  KOO24514.1 346 LNPNWSEVFTFT 357
                 6799***99855 PP

>> Cu_amine_oxidN3  Copper amine oxidase, N3 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.8   0.1   0.00058       2.1      39      75 ..       8      42 ..       4      49 .. 0.90
   2 !   10.6   0.0   0.00016      0.57      39      75 ..     227     261 ..     213     273 .. 0.89

  Alignments for each domain:
  == domain 1  score: 8.8 bits;  conditional E-value: 0.00058
                     EEE--SS-SSST.T--EEEEEEEE--SSS-GCGSEEE CS
  Cu_amine_oxidN3 39 tpltvgyrgeksegkRllkalvyyrtesanlyahPie 75
                     tpl +g+r++k+  + + k   y+  +++ ++ +P+e
       KOO24514.1  8 TPLPAGWREVKD--ATSGKTYYYHAPTKETQWVRPVE 42
                     7999********..778899999999999*******9 PP

  == domain 2  score: 10.6 bits;  conditional E-value: 0.00016
                      EEE--SS-SSST.T--EEEEEEEE--SSS-GCGSEEE CS
  Cu_amine_oxidN3  39 tpltvgyrgeksegkRllkalvyyrtesanlyahPie 75 
                      tpl +g+r++ks  + + k+  y+  +++ ++ +P++
       KOO24514.1 227 TPLPAGWREVKS--ATSGKMYYYHAPTKKTQWVRPVD 261
                      7999********..778999999999999*******9 PP

>> MbtH  MbtH-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.6   0.1    0.0063        22      30      41 ..       9      20 ..       6      25 .. 0.80
   2 ?    4.6   0.1     0.006        21      30      41 ..     228     239 ..     224     243 .. 0.81

  Alignments for each domain:
  == domain 1  score: 4.6 bits;  conditional E-value: 0.0063
                ---TTEEEEEEE CS
        MbtH 30 avPaGWrvvggp 41
                ++PaGWr+v  +
  KOO24514.1  9 PLPAGWREVKDA 20
                79******9665 PP

  == domain 2  score: 4.6 bits;  conditional E-value: 0.006
                 ---TTEEEEEEE CS
        MbtH  30 avPaGWrvvggp 41 
                 ++PaGWr+v  +
  KOO24514.1 228 PLPAGWREVKSA 239
                 79******9665 PP

>> RcnB  Nickel/cobalt transporter regulator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.6   0.5    0.0046        17      19      34 ..      24      39 ..       8      41 .. 0.75
   2 ?    4.8   0.3    0.0084        30      19      34 ..     243     258 ..     227     262 .. 0.79

  Alignments for each domain:
  == domain 1  score: 5.6 bits;  conditional E-value: 0.0046
        RcnB 19 rryhLpaPprGyrWvr 34
                + y  +aP + ++Wvr
  KOO24514.1 24 KTYYYHAPTKETQWVR 39
                7899***********8 PP

  == domain 2  score: 4.8 bits;  conditional E-value: 0.0084
        RcnB  19 rryhLpaPprGyrWvr 34 
                 + y  +aP + ++Wvr
  KOO24514.1 243 KMYYYHAPTKKTQWVR 258
                 7899***********9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (512 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       458  (0.0255452); expected 358.6 (0.02)
Passed bias filter:                      392  (0.021864); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.49u 0.27s 00:00:00.76 Elapsed: 00:00:00.41
# Mc/sec: 3707.66
//
Query:       KOO24515.1  [L=701]
Description: cmp-n-acetylneuraminate-beta-galactosamide-alpha- -sialyltransferase 1-like protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    8.7e-25   87.6   0.2    1.6e-22   80.2   0.2    2.4  1  Glyco_transf_29  Glycosyltransferase family 29 (sialyltransfe
  ------ inclusion threshold ------
      0.055   13.2   1.4       0.14   11.9   1.4    1.6  1  DUF4364          Domain of unknown function (DUF4364)


Domain annotation for each model (and alignments):
>> Glyco_transf_29  Glycosyltransferase family 29 (sialyltransferase)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   80.2   0.2   1.8e-26   1.6e-22      22     234 ..     429     604 ..     411     632 .. 0.67

  Alignments for each domain:
  == domain 1  score: 80.2 bits;  conditional E-value: 1.8e-26
  Glyco_transf_29  22 lerkkskevveellkllpkeesplenkkskrckrCaVVGngGiLkgsgcGkeIDshdfViRcNlaplegyeeDVGskttlvtmnpesiiekkfk 115
                      ++ k++ ++v+++ + + +     +++++ r+++CaVVG++G L+g + G+ ID+h  ViR+N ap++++e+ VG++tt +++n e  +     
       KOO24515.1 429 MGGKSEDDMVSSIRRYVAN----SSQPRQCRYRTCAVVGSSGALRGTHHGASIDAHTAVIRINAAPTHKHEAAVGRRTTWRVHNSEKPF----- 513
                      3444455555555555555....34445556*****************************************************95555..... PP

  Glyco_transf_29 116 klkeldkktflvllpfkgrdllwlpafltkekvslraletlekkvkskiklnkekvlilnPdflryvakfwlkskglkakrpstGllaltlAlh 209
                       l   +    l+l+ ++   + wl +   +          +        ++  +++ ++nP f  ++ + + +    +++ pstGlla+ +Al 
       KOO24515.1 514 ML-AANDVPELQLVICH---MAWLGSCQHQA---------FS-------GAYGTTIAYINPRFYSQLFELLGR--PRDKQSPSTGLLAIAIALG 585
                      11.11122222222222...44544443333.........22.......23356899************9955..56779************** PP

  Glyco_transf_29 210 lCdeVslyGFgpsedseklslHYyd 234
                      +C +     ++      + ++ Yyd
       KOO24515.1 586 TCRH-----YWE-CTAWEDESKYYD 604
                      **87.....555.333445555555 PP

>> DUF4364  Domain of unknown function (DUF4364)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   1.4   1.5e-05      0.14      89     151 ..      86     148 ..      72     155 .. 0.91

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 1.5e-05
     DUF4364  89 lkenkeelkkesevkadyykkengeytVklkikekdstllelklsvpseeqAkaicknwkkns 151
                 ++e + e ++e+e ka  +++e+++ +++ k++e +++l++l++ ++ + +A a+++   ++ 
  KOO24515.1  86 AQEIELEKRREAERKAHLEREEKKREEAQRKAREAEEELMNLSFGASARREAAAVARALAEEK 148
                 67788899**********************************************999887765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (701 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1716  (0.0957109); expected 358.6 (0.02)
Passed bias filter:                      434  (0.0242066); expected 358.6 (0.02)
Passed Vit filter:                        56  (0.00312343); expected 17.9 (0.001)
Passed Fwd filter:                        14  (0.000780858); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.82u 0.30s 00:00:01.11 Elapsed: 00:00:00.47
# Mc/sec: 4478.11
//
Query:       KOO24516.1  [L=252]
Description: cortactin-binding protein 2, partial [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.3e-13   50.5   0.4    2.3e-11   44.1   0.2    2.5  2  Ank_2     Ankyrin repeats (3 copies)
    9.5e-10   38.5   0.3    6.9e-05   23.1   0.2    2.6  2  Ank_5     Ankyrin repeats (many copies)
    3.1e-07   30.8   0.4      0.002   18.6   0.2    3.1  2  Ank_4     Ankyrin repeats (many copies)
    4.3e-06   26.7   0.1       0.31   11.7   0.0    3.4  3  Ank_3     Ankyrin repeat
    7.4e-06   26.2   1.8      0.033   14.7   0.1    3.2  3  Ank       Ankyrin repeat
  ------ inclusion threshold ------
       0.82   10.3   7.8        1.3    9.6   7.8    1.4  1  IHABP4_N  Intracellular hyaluronan-binding protein 4 N-termin


Domain annotation for each model (and alignments):
>> Ank_2  Ankyrin repeats (3 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.1   0.2   7.5e-15   2.3e-11      25      77 ..       9      67 ..       2      73 .. 0.83
   2 !   10.3   0.1   0.00027      0.81      12      47 ..      58     100 ..      57     136 .. 0.73

  Alignments for each domain:
  == domain 1  score: 44.1 bits;  conditional E-value: 7.5e-15
       Ank_2 25 ngktaLhyAakngnleivklLle.h..ad...ndgrtpLhyAarsghleivklLlekga 77
                 g t+L++A+ +g+ ++v+ Ll+ h  +d   ++g+tpL++A+ +g  ++v+lL+   a
  KOO24516.1  9 GGATPLYAACNKGDGDCVRRLLAvHaaVDqaaSNGTTPLMAACHQGDGDCVQLLFAAHA 67
                489***************9999865785566699**********9999******95434 PP

  == domain 2  score: 10.3 bits;  conditional E-value: 0.00027
       Ank_2  12 lvklLl.egadpn..k.ngktaLhyAakn...gnleivklLle 47 
                 +v+lL  ++a ++  + ng  +L +A+++   g++ i+++L +
  KOO24516.1  58 CVQLLFaAHAAVDqaNsNGVMPLLAACIKearGHTVIARFLRS 100
                 7888888777777643699999999999534477777888864 PP

>> Ank_5  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.2   0.0   2.9e-05     0.087      15      37 ..       9      31 ..       7      39 .. 0.87
   2 !   23.1   0.2   2.3e-08   6.9e-05      11      52 ..      38      79 ..      32      82 .. 0.86

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 2.9e-05
       Ank_5 15 ggntpLhvAakygaadvvrlLla 37
                gg tpL  A+++g  d+vr+Lla
  KOO24516.1  9 GGATPLYAACNKGDGDCVRRLLA 31
                789*******************3 PP

  == domain 2  score: 23.1 bits;  conditional E-value: 2.3e-08
       Ank_5 11 rldgggntpLhvAakygaadvvrlLlargadlnltdsrGlta 52
                    +g+tpL+ A+++g  d+v+lL+a +a+ ++ +s+G ++
  KOO24516.1 38 QAASNGTTPLMAACHQGDGDCVQLLFAAHAAVDQANSNGVMP 79
                5556899***************************99999666 PP

>> Ank_4  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.4   0.0    0.0011       3.4      34      55 .]       9      30 ..       7      30 .. 0.90
   2 !   18.6   0.2   6.8e-07     0.002       2      54 ..      44      98 ..      43      99 .. 0.88

  Alignments for each domain:
  == domain 1  score: 8.4 bits;  conditional E-value: 0.0011
       Ank_4 34 sGetalhiAakrgnveilklLl 55
                 G t+l+ A+ +g+ ++++ Ll
  KOO24516.1  9 GGATPLYAACNKGDGDCVRRLL 30
                588***************9887 PP

  == domain 2  score: 18.6 bits;  conditional E-value: 6.8e-07
       Ank_4  2 ltaLhyaaisgrlelvrlLlekgadinaqdnrsGetalhiAa...krgnveilklL 54
                +t+L +a+++g+ ++v+lL++  a ++   n++G  +l  A+    rg+  i+++L
  KOO24516.1 44 TTPLMAACHQGDGDCVQLLFAAHAAVDQA-NSNGVMPLLAACikeARGHTVIARFL 98
                89******************999989886.************88888887777776 PP

>> Ank_3  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.8   0.0    0.0002      0.61       2      28 ..      10      35 ..       9      38 .. 0.86
   2 !   11.7   0.0    0.0001      0.31       2      28 ..      43      68 ..      42      71 .. 0.83
   3 ?   -1.0   0.0       1.4   4.2e+03       2      16 ..      76      92 ..      75     105 .. 0.62

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.0002
       Ank_3  2 GetpLhlAarsgnleivkfLlenkgad 28
                G tpL+ A+  g+ + v+ Ll   +a 
  KOO24516.1 10 GATPLYAACNKGDGDCVRRLLA-VHAA 35
                89*******************9.4554 PP

  == domain 2  score: 11.7 bits;  conditional E-value: 0.0001
       Ank_3  2 GetpLhlAarsgnleivkfLlenkgad 28
                G tpL+ A+++g+ + v++L+   +a 
  KOO24516.1 43 GTTPLMAACHQGDGDCVQLLFA-AHAA 68
                669************9999998.4555 PP

  == domain 3  score: -1.0 bits;  conditional E-value: 1.4
       Ank_3  2 GetpLhlAarsgnl..e 16
                G  pL  A+       +
  KOO24516.1 76 GVMPLLAACIKEARghT 92
                56688888887766444 PP

>> Ank  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.8   0.0   0.00078       2.3       2      24 ..      10      34 ..       9      40 .. 0.80
   2 !   14.7   0.1   1.1e-05     0.033       1      22 [.      42      63 ..      42      74 .. 0.77
   3 ?   -0.1   0.0      0.52   1.6e+03       2      24 ..      76     102 ..      75     111 .. 0.59

  Alignments for each domain:
  == domain 1  score: 8.8 bits;  conditional E-value: 0.00078
                SBBHHHHHHHHTTHHHHHHHH..TT CS
         Ank  2 GnTPLHlAatngkkriiklLL..hG 24
                G TPL  A++ g+ ++++ LL  h 
  KOO24516.1 10 GATPLYAACNKGDGDCVRRLLavHA 34
                78*******888888**99996554 PP

  == domain 2  score: 14.7 bits;  conditional E-value: 1.1e-05
                TSBBHHHHHHHHTTHHHHHHHH CS
         Ank  1 dGnTPLHlAatngkkriiklLL 22
                +G TPL+ A++ g+ ++++lL 
  KOO24516.1 42 NGTTPLMAACHQGDGDCVQLLF 63
                799*******889889***764 PP

  == domain 3  score: -0.1 bits;  conditional E-value: 0.52
                 SBBHHHHHH...HHTTHHHHHHHH.TT CS
         Ank   2 GnTPLHlAa...tngkkriiklLL.hG 24 
                 G  PL  A+    +g++ i+++L  +G
  KOO24516.1  76 GVMPLLAACikeARGHTVIARFLRsRG 102
                 666888888777556666666543335 PP

>> IHABP4_N  Intracellular hyaluronan-binding protein 4 N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   7.8   0.00042       1.3      30      89 ..     139     196 ..     132     252 .] 0.62

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 0.00042
    IHABP4_N  30 aekkkeekkkkkreekenkgkrkagpkgaksaakaaaakagkkesqkerkkpkkegeeqp 89 
                  e + +++ ++k++ k++k+k+ ++ k+ +saa a+aa +g  e+  e ++++ ++    
  KOO24516.1 139 VEAAHKQQAHTKKASKKAKAKQAGASKARASAASASAAARGSAEPDSEVSAAAGDE--DV 196
                 45566777777777777777777777777778878888888888877776666554..33 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (252 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1993  (0.111161); expected 358.6 (0.02)
Passed bias filter:                      708  (0.0394891); expected 358.6 (0.02)
Passed Vit filter:                        92  (0.00513135); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.54u 0.24s 00:00:00.78 Elapsed: 00:00:00.41
# Mc/sec: 1842.97
//
Query:       KOO24517.1  [L=235]
Description: flagellar basal body protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    9.6e-98  326.2   1.2    1.1e-97  326.0   1.2    1.0  1  DUF4464   Domain of unknown function (DUF4464)
  ------ inclusion threshold ------
       0.16   12.1   0.0       0.22   11.6   0.0    1.2  1  AIRS_C    AIR synthase related protein, C-terminal domain


Domain annotation for each model (and alignments):
>> DUF4464  Domain of unknown function (DUF4464)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  326.0   1.2  1.2e-101   1.1e-97       3     223 .]      14     234 ..      12     234 .. 0.99

  Alignments for each domain:
  == domain 1  score: 326.0 bits;  conditional E-value: 1.2e-101
     DUF4464   3 vlkfetYedYLdsfitkedlrYLedeelarqlvelgyrgtgevlsreeFearkkaleealepk.kkkkkkllsagldlskdpllkaLaeREeanrskkl 100
                 v +++tYedYLds+it++d++YLede+larqlvelgyrg+ge+l+r+eF arkka+e+a+ +k + ++k l+sa++d +  p+l  LaeREe +r++kl
  KOO24517.1  14 VNDYDTYEDYLDSQITPTDIYYLEDEDLARQLVELGYRGSGETLKRDEFLARKKAAEQARLNKlRATPKPLASAFKDVTGFPFLASLAEREEMVRNGKL 112
                 789************************************************************9899******************************** PP

     DUF4464 101 stiiFirdrnkkgqeiSgYIDyeqrLksedwkaiFegkkrLlPkktdLsyynwktnkvtsndsdnfqviadsekgLlfkhkrDrkvinvdpkaekpgdn 199
                 +tiiFird+n+kgqe+SgYIDy++rLk+e+++++Fe+kk+L+P+ tdLs+ynw+t+++tsn ++nfqviad+e gLlfk+krDrkvinvdpka +pgdn
  KOO24517.1 113 TTIIFIRDKNAKGQEVSGYIDYAHRLKTENFEPYFERKKKLMPTMTDLSFYNWETQTSTSNATPNFQVIADNEAGLLFKNKRDRKVINVDPKA-RPGDN 210
                 *********************************************************************************************.***** PP

     DUF4464 200 skrteieseeygqvvlYdHvvRrk 223
                 s+r+e++++ey+qvvlYdHv+Rrk
  KOO24517.1 211 SRRIELHTHEYTQVVLYDHVTRRK 234
                 **********************97 PP

>> AIRS_C  AIR synthase related protein, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   2.5e-05      0.22      38      92 ..      64     119 ..      37     147 .. 0.72

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 2.5e-05
                 HHHHHHHHHHHHHHHHHHHHHTTECEEEE--TTHHHHHHHH...HHHTTTEEEEEECG CS
      AIRS_C  38 lgdvlleptliyvkralaalkglvkaahDvTgGGLlgalae...mapasgvgaeidld 92 
                     ++e+ ++++ ra +    l++a++DvTg+ +l +lae   m++ ++++  i + 
  KOO24517.1  64 ARKKAAEQARLNKLRATPK--PLASAFKDVTGFPFLASLAEreeMVRNGKLTTIIFIR 119
                 3334556666666666666..6*****************8533388888887777766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (235 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       481  (0.026828); expected 358.6 (0.02)
Passed bias filter:                      339  (0.0189079); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.39u 0.23s 00:00:00.62 Elapsed: 00:00:00.37
# Mc/sec: 1892.98
//
Query:       KOO24518.1  [L=196]
Description: hypothetical protein Ctob_004898 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
     0.0051   17.5   7.6     0.0091   16.7   7.6    1.4  1  GRP       Glycine rich protein family
  ------ inclusion threshold ------
      0.029   14.8   0.0      0.087   13.3   0.0    1.7  2  SAM_1     SAM domain (Sterile alpha motif)


Domain annotation for each model (and alignments):
>> GRP  Glycine rich protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   7.6     1e-06    0.0091      17      80 ..     116     177 ..     101     189 .. 0.56

  Alignments for each domain:
  == domain 1  score: 16.7 bits;  conditional E-value: 1e-06
         GRP  17 lLissevaaaelskeeksekeeevkdekyggggkhggGgygggggggngGG.GykgggGgygggg 80 
                   i+  +   + s+   s +++e k+ k+ g g+  +G + g g +g++GG G++gggG+++ggg
  KOO24518.1 116 AVITYSMGGGS-SAPRPSPHAKEPKPGKHAGLGT--EGKHAGLGADGKHGGdGKHGGGGKHHGGG 177
                 34444444433.3555666677777777766554..55666666666666634444555555544 PP

>> SAM_1  SAM domain (Sterile alpha motif)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.0   9.7e-06     0.087       7      58 ..       6      58 ..       2      63 .. 0.89
   2 ?   -1.2   0.0      0.31   2.8e+03      38      54 ..      62      78 ..      59      79 .. 0.89

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 9.7e-06
                SHHHHHHHTTSGGGHHHH.HTT.TSSHHHHTTSCHHHHHHCTTTSHHHHHHHHH CS
       SAM_1  7 dVgeWLesiglgqYadlF.rag.eidgdaLlllteddLeklgvtllGHrkkIly 58
                +V  +L +igl+ ++ +   +g +++++aL   + ++L + gv ++ H+k I +
  KOO24518.1  6 EVEAFLAEIGLESCIQAVvHNGfYTSMEALRGAQYEELVDSGV-RPVHAKLIIS 58
                6889**************8777679******************.77****9986 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 0.31
                CHHHHHHCTTTSHHHHH CS
       SAM_1 38 teddLeklgvtllGHrk 54
                t++d+  + vt   Hr+
  KOO24518.1 62 TKEDYAGISVTPANHRL 78
                8999999*****99996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (196 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       357  (0.0199119); expected 358.6 (0.02)
Passed bias filter:                      286  (0.0159518); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.36u 0.24s 00:00:00.60 Elapsed: 00:00:00.37
# Mc/sec: 1607.87
//
Query:       KOO24519.1  [L=242]
Description: hypothetical protein Ctob_004897 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
  ------ inclusion threshold ------
       0.15   10.4  31.7       0.22    9.8  31.7    1.3  1  MAD              Mitotic checkpoint protein
       0.26   11.6  33.3       0.82   10.0  10.9    3.1  3  OmpH             Outer membrane protein (OmpH-like)
        0.3   11.1   7.8      0.096   12.7   0.9    2.6  2  PilJ             Type IV pili methyl-accepting chemotaxis tra
        0.3    9.8   1.9       0.44    9.2   1.9    1.2  1  NPR2             Nitrogen permease regulator 2
        0.9    9.7  36.4       0.89    9.8   4.4    2.8  2  ATG16            Autophagy protein 16 (ATG16)
        1.3    9.1  10.4       0.69   10.0   6.9    2.3  3  Cob_adeno_trans  Cobalamin adenosyltransferase
        1.3    9.4  32.2       0.17   12.3  21.0    2.2  2  Fez1             Fez1
        1.7    8.8  12.1       0.29   11.3   2.7    2.3  2  Fib_alpha        Fibrinogen alpha/beta chain family
          2    8.5  11.1       0.31   11.1   5.3    2.3  2  DUF1515          Protein of unknown function (DUF1515)
        3.1    7.8  19.2      0.043   13.9   7.8    3.0  4  CtIP_N           Tumour-suppressor protein CtIP N-terminal do
        3.3    7.0  28.3        3.9    6.7  26.7    1.8  1  DUF4407          Domain of unknown function (DUF4407)
        4.1    8.1  25.7       0.43   11.3   0.3    4.0  4  DUF4404          Domain of unknown function (DUF4404)
        4.8    7.7  24.4    1.2e+02    3.2   7.7    3.6  2  DUF16            Protein of unknown function DUF16
        5.1    6.6  18.0         12    5.4  17.7    1.8  1  Exonuc_VII_L     Exonuclease VII, large subunit
        5.6    7.4  25.8        2.1    8.8  14.1    3.5  3  CC2-LZ           Leucine zipper of domain CC2 of NEMO, NF-kap
        6.8    7.9  27.1        0.9   10.7   9.2    3.7  3  SOGA             Protein SOGA


Domain annotation for each model (and alignments):
>> MAD  Mitotic checkpoint protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8  31.7    0.0002      0.22      50     235 ..      34     223 ..       2     238 .. 0.60

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.0002
         MAD  50 nqelqkrikllekreeekeealreqiElarlkkknlealnkkekekesklaearevisalknelaelkrqiekqelelsekeseleelqer....ldll 144
                 ++            e   + +l ++iE   +   +++ ++ ++k k+ +   +rev ++ k+   + ++ + +   e++ekese+++ +++     ++l
  KOO24519.1  34 EE------------EPSVDPELAKRIETTVAESASEDLVEPAAKHKTRSTDRIREVRTEEKKLYGKINKRMGQLGREVEEKESEIQKEKQKatamEEEL 120
                 22............2333445566666666666677777777777777777777776655555555555555555555555444444444311113444 PP

         MAD 145 kkklseleqliqqlekkqkelaeaeqrikeLefeiqs.......qeddslivknsksel.aripelekelerlre....enkklnelkenkelLkEeve 231
                  kk+++l++  + l ++++  ++a+++ikeLe e+ +             ++k+  ++l a ++   + +++ +e    +n++l+ + +++ lL+E ++
  KOO24519.1 121 VKKAQKLNETAARLGTAEEAKKTANEKIKELETEVRElkkelakPPPVPPMTKEEADKLrADVSAFRRAKDKAEEdlilRNEELQASAQEIALLNERIA 219
                 556666666667777777777777777777777776643333224455568999999999999999999888777444469****************99 PP

         MAD 232 dlkk 235
                  +++
  KOO24519.1 220 KMNA 223
                 8865 PP

>> OmpH  Outer membrane protein (OmpH-like)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.4   0.1      0.65   7.3e+02      81     103 ..       6      28 ..       2      59 .. 0.73
   2 ?    8.1  20.3    0.0029       3.3      16     107 ..      73     164 ..      66     164 .. 0.82
   3 ?   10.0  10.9   0.00073      0.82      29     111 ..     138     227 ..     135     238 .. 0.69

  Alignments for each domain:
  == domain 1  score: 0.4 bits;  conditional E-value: 0.65
                 HHHHHHHHHHHHHHHHHHHHHHH CS
        OmpH  81 qelqkkqqellkpildkinkaik 103
                 q+l+ k++ +l+++ + i  a++
  KOO24519.1   6 QQLATKRNVALESVNEAISSALS 28 
                 67777777777777777666654 PP

  == domain 2  score: 8.1 bits;  conditional E-value: 0.0029
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTS.-HHHHHHHHHHHHHHHHHHHHHH...HHHHHHHHHHHHHHHHHHHHHHHHHHH CS
        OmpH  16 egkaaqeqlekkfkklqaeleakekelqklqeelqkkakklekeekeqelqkkeqelqqkqqqka...qelqkkqqellkpildkinkaikevak 107
                   ++++++ +k + k+++ + ++++e+++++ e+qk+++k   ++ e+el kk q+l++ + ++    +e +k  +e +k++  ++++  ke+ak
  KOO24519.1  73 RIREVRTEEKKLYGKINKRMGQLGREVEEKESEIQKEKQK--ATAMEEELVKKAQKLNETA-ARLgtaEEAKKTANEKIKELETEVRELKKELAK 164
                 5677888889999999999999999999999999988887..7889999999999999944.444488999999999999999999988888776 PP

  == domain 3  score: 10.0 bits;  conditional E-value: 0.00073
                 HHHHHHHHHHHHHHHHHHHHHHHHTTTS........-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH..HHHHHHHHHHHHHHHHTT- CS
        OmpH  29 kklqaeleakekelqklqeelqkkakkle.......keekeqelqkkeqelqqkqqqkaqelqkkqqellk..pildkinkaikevakekgy 111
                 ++ +++ ++k kel+++++el+k+ +  +       ++e++ +l++ + ++++++++++++l  +++el++  + +  +n+ i++ ++ek++
  KOO24519.1 138 EEAKKTANEKIKELETEVRELKKELA--KpppvppmTKEEADKLRADVSAFRRAKDKAEEDLILRNEELQAsaQEIALLNERIAKMNAEKKA 227
                 44455555555555555555552223..235577767777778**********666666999999999888333447888888888888876 PP

>> PilJ  Type IV pili methyl-accepting chemotaxis transducer N-term
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.1   0.7      0.17   1.9e+02      49     105 ..      42     109 ..       5     118 .. 0.65
   2 ?   12.7   0.9   8.6e-05     0.096      23      95 ..     124     190 ..     118     214 .. 0.73

  Alignments for each domain:
  == domain 1  score: 2.1 bits;  conditional E-value: 0.17
        PilJ  49 etiaqfdrtlaalrlgdpapgllvpae...........avraqleaveqlWqelkkpaeaalaqqdda 105
                 e ++++++t+a+ ++ d+  + ++ ++           + ++ + ++++++ +l + +e   ++ +++
  KOO24519.1  42 ELAKRIETTVAESASEDLVEPAAKHKTrstdrirevrtEEKKLYGKINKRMGQLGREVEEKESEIQKE 109
                 44455555555555555555555555555577776666777778888888887777775555544444 PP

  == domain 2  score: 12.7 bits;  conditional E-value: 8.6e-05
        PilJ  23 sqRlakeallaaagaydaaearaqlretiaqfdrtlaalrlgdpapgllvpaeavraqleaveqlWqelkkpa 95 
                 +q+l     ++aa+   a+ea++ ++e+i+++++ +++l++  ++p+  +p   ++++ ++++++ ++++++ 
  KOO24519.1 124 AQKLN----ETAARLGTAEEAKKTANEKIKELETEVRELKKELAKPPPVPP--MTKEEADKLRADVSAFRRAK 190
                 45666....3333335678********************999888766666..78888888888888777765 PP

>> NPR2  Nitrogen permease regulator 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.2   1.9   0.00039      0.44      99     155 ..      79     141 ..      74     164 .. 0.69

  Alignments for each domain:
  == domain 1  score: 9.2 bits;  conditional E-value: 0.00039
        NPR2  99 esdttpYesvvkrlgrllrvlEeqnkfLskedkdvvffk......saklaeadatvnvpgask 155
                 + ++  Y+++ kr+g+l r++Ee++  + ke+++++  +       +kl+e+ a + ++ ++k
  KOO24519.1  79 TEEKKLYGKINKRMGQLGREVEEKESEIQKEKQKATAMEeelvkkAQKLNETAARLGTAEEAK 141
                 567889***********************9999887777566665333444444444444444 PP

>> ATG16  Autophagy protein 16 (ATG16)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.5  24.1     0.032        36      16     131 ..      19     161 ..       1     165 [. 0.40
   2 ?    9.8   4.4   0.00079      0.89      81     137 ..     174     230 ..     169     238 .. 0.91

  Alignments for each domain:
  == domain 1  score: 4.5 bits;  conditional E-value: 0.032
       ATG16  16 afaeliqaynr.............Lldrtsaleaenaklekaaasakssksskksakekeasasq...............snskqsakiqsleqklaql 86 
                 +++++ +a ++             L++r+++  ae+a+      +ak+ k+ ++++ ++ +++++               + ++++++iq+ +qk +++
  KOO24519.1  19 VNEAISSALSDeeadeeepsvdpeLAKRIETTVAESASEDLVEPAAKH-KTRSTDRIREVRTEEKklygkinkrmgqlgrEVEEKESEIQKEKQKATAM 116
                 444444444444444444444444555555554444443211111111.11111111111111112333333333334444444444444444444444 PP

       ATG16  87 reelaelyksrgelaqrllelneelqkleeklkedeerlaeleae 131
                  eel +  ++ +e+a rl +++e+ ++ +ek+ke e++++el++e
  KOO24519.1 117 EEELVKKAQKLNETAARLGTAEEAKKTANEKIKELETEVRELKKE 161
                 444444444444444444444444444444444444444444444 PP

  == domain 2  score: 9.8 bits;  conditional E-value: 0.00079
       ATG16  81 qklaqlreelaelyksrgelaqrllelneelqkleeklkedeerlaeleaeraalet 137
                 ++  +lr+++++  +++ + ++ l+  neelq+  +++   +er+a+++ae++a ++
  KOO24519.1 174 EEADKLRADVSAFRRAKDKAEEDLILRNEELQASAQEIALLNERIAKMNAEKKAQSR 230
                 67789*********************************************9987655 PP

>> Cob_adeno_trans  Cobalamin adenosyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.6   0.8       0.5   5.6e+02      52      72 ..      80     100 ..       5     119 .. 0.56
   2 ?   10.0   6.9   0.00062      0.69      32     134 ..      99     197 ..      76     219 .. 0.61
   3 ?    0.3   0.3      0.61   6.8e+02      78     101 ..     201     224 ..     171     237 .. 0.53

  Alignments for each domain:
  == domain 1  score: 0.6 bits;  conditional E-value: 0.5
                      HHHHHHHHHHHHHHHHHHHHH CS
  Cob_adeno_trans  52 elkeaLeeiqneLfdlgaela 72 
                      e k+   +i +++ +lg e+ 
       KOO24519.1  80 EEKKLYGKINKRMGQLGREVE 100
                      222333334444444444443 PP

  == domain 2  score: 10.0 bits;  conditional E-value: 0.00062
                      HHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHHHHHHHHHT.-BTCCG-S--HHHHHHHHHHHHHHHHHS--...EESEEES-SSHHHHHHHH CS
  Cob_adeno_trans  32 vDelnsaiglarallaeeeeelkeaLeeiqneLfdlgaelatpekkkekkkiteeeveelekeideleaelpp...lksfilpggspaaaalhv 122
                      v+e +s i   +    +++++++e+L +  ++L +  a l t    +e+kk  +e+++ele+e+ el++el +   +   +  + +++ a ++ 
       KOO24519.1  99 VEEKESEIQKEK----QKATAMEEELVKKAQKLNETAARLGTA---EEAKKTANEKIKELETEVRELKKELAKpppVPPMTKEEADKLRADVSA 185
                      455555555444....225789999999999999999999865...3455556666************99985111334444444445555555 PP

                      HHHHHHHHHHHH CS
  Cob_adeno_trans 123 aRtvcRraERav 134
                       R    +aE  +
       KOO24519.1 186 FRRAKDKAEEDL 197
                      554444455554 PP

  == domain 3  score: 0.3 bits;  conditional E-value: 0.61
                      CCG-S--HHHHHHHHHHHHHHHHH CS
  Cob_adeno_trans  78 kekkkiteeeveelekeideleae 101
                      +e+ + +++e++ l+++i +++ae
       KOO24519.1 201 NEELQASAQEIALLNERIAKMNAE 224
                      233334444455555555555544 PP

>> Fez1  Fez1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.1  12.5      0.43   4.8e+02      61     155 ..       9     117 ..       2     119 .. 0.57
   2 ?   12.3  21.0   0.00015      0.17      39     154 ..      98     228 ..      94     239 .. 0.71

  Alignments for each domain:
  == domain 1  score: 1.1 bits;  conditional E-value: 0.43
        Fez1  61 leektlelevcenelqrk.......kseaellrekvekleeelkelre.elselsleeeeaalesdeakaqrqe........aeeleelkreverlrae 143
                 +++++  le +++ ++ +       ++e ++  e ++++e+ ++e  + +l e ++  ++++ ++d+ ++ r+e        ++++++l reve+ ++e
  KOO24519.1   9 ATKRNVALESVNEAISSAlsdeeadEEEPSVDPELAKRIETTVAESASeDLVEPAA--KHKTRSTDRIREVRTEekklygkiNKRMGQLGREVEEKESE 105
                 44555566666555555544444445566666666666666666553313444222..2222233333333333444667778999************* PP

        Fez1 144 Lkeerqkkeeqa 155
                 +++e+qk  +++
  KOO24519.1 106 IQKEKQKATAME 117
                 *****9987664 PP

  == domain 2  score: 12.3 bits;  conditional E-value: 0.00015
        Fez1  39 qlrelrakleekeeeikeleesleektlelevcenelqrkkseaellrekvekleeelkelreelselsleeeeaalesdeakaqrqe........... 126
                 ++ e +++++++ ++++ +ee+l +k+++l++  ++l  +++ +++ +ek+++le+e++el++el++  +    +++e+d+ +a  ++           
  KOO24519.1  98 EVEEKESEIQKEKQKATAMEEELVKKAQKLNETAARLGTAEEAKKTANEKIKELETEVRELKKELAKPPPVPPMTKEEADKLRADVSAfrrakdkaeed 196
                 67788999999999999999999999999999999999999999*******************999977665555544444333333344444555556 PP

        Fez1 127 ....aeeleelkreverlraeLkeerqkkeeq 154
                     +eel++  +e++ l++++++ + +k++q
  KOO24519.1 197 lilrNEELQASAQEIALLNERIAKMNAEKKAQ 228
                 77776677777777777777665555444444 PP

>> Fib_alpha  Fibrinogen alpha/beta chain family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.9   2.7       0.1   1.1e+02      75     129 ..      63     117 ..       9     120 .. 0.75
   2 ?   11.3   2.7   0.00026      0.29      30     129 ..     120     222 ..     113     231 .. 0.85

  Alignments for each domain:
  == domain 1  score: 2.9 bits;  conditional E-value: 0.1
                 HHHHHHHHHHHHHHCCCHHHHHHHCCH.HHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
   Fib_alpha  75 ndnvikksskeleeeilrlketidaqe.snirvLqnvlesneqkiqkLeqdidqke 129
                   +  ++s+++++ e+ + ++++  ++ +++ +L   +e++e++iqk +q+ ++ e
  KOO24519.1  63 AAKHKTRSTDRIR-EVRTEEKKLYGKInKRMGQLGREVEEKESEIQKEKQKATAME 117
                 3556667888888.888888888888889999999999999999999998887765 PP

  == domain 2  score: 11.3 bits;  conditional E-value: 0.00026
                 CCCCCHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH...HHHHHHHHHHHHHCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHH CS
   Fib_alpha  30 ekdvkkdlekleneleeisnstkeaeelvkeikdslrekqkskkdn...dnvikksskeleeeilrlketidaqesnirvLqnvlesneqkiqkLeqdi 125
                   +  ++l++   +l ++++ +k+a+e +ke+++ +re +k+ ++      ++k+ +++l+ +++ +++  d+ e+ +    + l++  q+i+ L++ i
  KOO24519.1 120 LVKKAQKLNETAARLGTAEEAKKTANEKIKELETEVRELKKELAKPppvPPMTKEEADKLRADVSAFRRAKDKAEEDLILRNEELQASAQEIALLNERI 218
                 4555678888899999*****************999887777665445699***************************999999***********9999 PP

                 HHHH CS
   Fib_alpha 126 dqke 129
                 ++ +
  KOO24519.1 219 AKMN 222
                 8755 PP

>> DUF1515  Protein of unknown function (DUF1515)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   5.3   0.00028      0.31       4      75 ..      86     157 ..      83     165 .. 0.71
   2 ?    0.9   1.7       0.4   4.5e+02      11      53 ..     149     205 ..     146     232 .. 0.49

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00028
     DUF1515   4 agvlqqlgtllaevkelredlkrsedrsdasrakmyrk...mdelvervtalegsvvklkaditsvkevtedvkk 75 
                 + + +++g+l +ev+e   ++++ ++++ a+  ++ +k   ++e   r+++ e +  + ++ i    e+  +v+ 
  KOO24519.1  86 GKINKRMGQLGREVEEKESEIQKEKQKATAMEEELVKKaqkLNETAARLGTAEEAKKTANEKIK---ELETEVRE 157
                 6688899**********************99876666500055556677777777766666654...44444444 PP

  == domain 2  score: 0.9 bits;  conditional E-value: 0.4
     DUF1515  11 gtllaevkelredlk...............rsedrsdas...rakmyrkmdelvervtale 53 
                 ++l +ev+el+++l                    r+d+s   rak  +  ++l+ r + l+
  KOO24519.1 149 KELETEVRELKKELAkpppvppmtkeeadkL---RADVSafrRAKD-KAEEDLILRNEELQ 205
                 6677788888877777777777654432221...233221102322.22333444433333 PP

>> CtIP_N  Tumour-suppressor protein CtIP N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.1       5.6   6.3e+03      44      57 ..       5      18 ..       2      35 .. 0.51
   2 ?   -1.5   0.0       2.2   2.5e+03      91     109 ..      67      85 ..      49      95 .. 0.62
   3 ?   13.9   7.8   3.8e-05     0.043      10      66 ..     100     156 ..      91     160 .. 0.91
   4 ?    1.1   0.3      0.33   3.8e+02      14      36 ..     209     231 ..     174     240 .. 0.65

  Alignments for each domain:
  == domain 1  score: -2.8 bits;  conditional E-value: 5.6
      CtIP_N 44 nqqlreqqkalken 57
                +qql  ++++  e+
  KOO24519.1  5 TQQLATKRNVALES 18
                33333333322222 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 2.2
      CtIP_N  91 klqslqlitiLtnEmntLk 109
                 k +s  +i +   E ++L 
  KOO24519.1  67 KTRSTDRIREVRTEEKKLY 85 
                 4455555555555555554 PP

  == domain 3  score: 13.9 bits;  conditional E-value: 3.8e-05
      CtIP_N  10 eiHekevqglqekvlelkkercldaqrleelfsknqqlreqqkalkenikvlenrLr 66 
                 e  e+e+q+ ++k + +++e + +aq+l+e  ++  + +e +k+ +e+ik le + r
  KOO24519.1 100 EEKESEIQKEKQKATAMEEELVKKAQKLNETAARLGTAEEAKKTANEKIKELETEVR 156
                 456889***********************************************9987 PP

  == domain 4  score: 1.1 bits;  conditional E-value: 0.33
      CtIP_N  14 kevqglqekvlelkkercldaqr 36 
                 +e+  l+e++++++ e+  +++ 
  KOO24519.1 209 QEIALLNERIAKMNAEKKAQSRD 231
                 44445555555555555554444 PP

>> DUF4407  Domain of unknown function (DUF4407)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.7  26.7    0.0035       3.9     107     252 ..      46     223 ..      37     240 .. 0.58

  Alignments for each domain:
  == domain 1  score: 6.7 bits;  conditional E-value: 0.0035
     DUF4407 107 eIdaelaeeqqeeakelkeqlaaa..................ltaelaeleaqiaalqaeidaaearldalraeaqkeldgtkgtgttgvaGkgpaake 187
                  I++++ae ++e+  e  ++ ++                    ++++ +l +++++ ++ei++ +++++a ++e+ k+++    ++t ++ G  ++ak+
  KOO24519.1  46 RIETTVAESASEDLVEPAAKHKTRstdrirevrteekklygkINKRMGQLGREVEEKESEIQKEKQKATAMEEELVKKAQK--LNETAARLGTAEEAKK 142
                 455556666666555555555555223333333333444444444555555555555555555555555555555555554..6666778888888876 PP

     DUF4407 188 .kkaqldaaqaelaelkakld...............atarlaalraelaeleaerakeraasqaaaaaddGllarlealdr 252
                  ++++++++++e+ elk++l                 +a+++a r+ ++++e++++ ++++ qa+a++ + l +r+  +++
  KOO24519.1 143 tANEKIKELETEVRELKKELAkpppvppmtkeeadkLRADVSAFRRAKDKAEEDLILRNEELQASAQEIALLNERIAKMNA 223
                 58999999999*****99999********9999999555555555555555555555555544444444444444333333 PP

>> DUF4404  Domain of unknown function (DUF4404)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   2.2    0.0015       1.7      12      59 ..       2      53 ..       1      58 [. 0.90
   2 ?   -0.2   7.1       1.4   1.6e+03       5      61 ..      99     152 ..      88     155 .. 0.50
   3 ?   11.3   0.3   0.00038      0.43       1      55 [.     151     206 ..     151     213 .. 0.80
   4 ?    0.3   0.5      0.99   1.1e+03      22      51 ..     207     237 ..     198     242 .] 0.56

  Alignments for each domain:
  == domain 1  score: 9.4 bits;  conditional E-value: 0.0015
     DUF4404 12 LeqnesldeetralLeslaedieellaeedaaaeeee....laerlneaver 59
                L+++++l ++ +  Les++e i+ +l++e+a +ee++    la+r++++v++
  KOO24519.1  2 LSKTQQLATKRNVALESVNEAISSALSDEEADEEEPSvdpeLAKRIETTVAE 53
                7889999999999*********************999999999999998876 PP

  == domain 2  score: -0.2 bits;  conditional E-value: 1.4
     DUF4404   5 LekLheeLeqnesldeetralLeslaedieellaeedaaaeeeelaerlneaverFe 61 
                 +e+ ++e++++++  ++ +++L + a++++e+ a+ ++a+e++   +++ne +++ e
  KOO24519.1  99 VEEKESEIQKEKQKATAMEEELVKKAQKLNETAARLGTAEEAK---KTANEKIKELE 152
                 3333445555555555555555555566666666655555554...44444444444 PP

  == domain 3  score: 11.3 bits;  conditional E-value: 0.00038
     DUF4404   1 LkelLekLheeLeqnesldeetralLeslaedieellaeedaaaeeee.laerlne 55 
                 L++++++L++eL++ +++ + t+++  +l+ d+++  + +d+a+e+    +e+l+ 
  KOO24519.1 151 LETEVRELKKELAKPPPVPPMTKEEADKLRADVSAFRRAKDKAEEDLIlRNEELQA 206
                 67899*****************************8777777776664355555555 PP

  == domain 4  score: 0.3 bits;  conditional E-value: 0.99
     DUF4404  22 tralLeslaedieellaeedaaaeeee.lae 51 
                 ++++++ l+e i ++ ae++a++ ++e  +e
  KOO24519.1 207 SAQEIALLNERIAKMNAEKKAQSRDAEiAME 237
                 4455555666666666666665555555555 PP

>> DUF16  Protein of unknown function DUF16
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.2   7.7      0.11   1.2e+02      43      94 ..      81     129 ..      28     136 .. 0.55
   2 ?    0.9  11.9      0.55   6.2e+02      38      77 ..     192     231 ..     116     240 .. 0.62

  Alignments for each domain:
  == domain 1  score: 3.2 bits;  conditional E-value: 0.11
                 HH.......HHHHHHHHHHHHHHHHHHHHHHHHHHHHH.......HHHHHHHHHHH CS
       DUF16  43 vd....klgeqinkleqkvekqgekikelkveqkaqgeelnkvdetleliletLqk 94 
                  +    k ++++ +l  +ve+++ +i++ k++  a +eel k        ++ L++
  KOO24519.1  81 EKklygKINKRMGQLGREVEEKESEIQKEKQKATAMEEELVKK-------AQKLNE 129
                 2222233334444555555555555555555555555554433.......333333 PP

  == domain 2  score: 0.9 bits;  conditional E-value: 0.55
                 HHHHHHH...HHHHHHHHHHHHHHHHHHHHHHHHHHHHH. CS
       DUF16  38 kieakvdklgeqinkleqkvekqgekikelkveqkaqgee 77 
                 k e+ +  ++e++++ +q++  ++e+i ++++e kaq+++
  KOO24519.1 192 KAEEDLILRNEELQASAQEIALLNERIAKMNAEKKAQSRD 231
                 3444444778888888888888888888888888888775 PP

>> Exonuc_VII_L  Exonuclease VII, large subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.4  17.7      0.01        12     133     241 ..      50     178 ..      42     239 .. 0.46

  Alignments for each domain:
  == domain 1  score: 5.4 bits;  conditional E-value: 0.01
  Exonuc_VII_L 133 aaAelvvpdkaeleeqleelerrlekaikrlleekkqrleklasrlkspeellerkrqrldeleerleralkkqlkkkrerleelkerl.k...... 222
                    +Ae ++   ++l e  ++ + r ++ i++  +e+k+   k+++r+ +  + +e+k++++++ +++ ++ ++++l kk+++l+e+++rl +      
    KOO24519.1  50 TVAESAS---EDLVEPAAKHKTRSTDRIREVRTEEKKLYGKINKRMGQLGREVEEKESEIQKEKQKATA-MEEELVKKAQKLNETAARLgTaeeakk 142
                   5666666...55555555555555555555555555555555555544444444444444443333333.444444444444444444433333322 PP

  Exonuc_VII_L 223 ...ekleekkerlkklkerle..............l 241
                      ek++e ++++++lk++l+              +
    KOO24519.1 143 tanEKIKELETEVRELKKELAkpppvppmtkeeadK 178
                   333444444444444444443444444322222220 PP

>> CC2-LZ  Leucine zipper of domain CC2 of NEMO, NF-kappa-B essential modulator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.4   6.9     0.088        98      13      52 ..      89     128 ..      70     131 .. 0.77
   2 ?    8.8  14.1    0.0019       2.1       5      92 ..     116     211 ..     111     219 .. 0.78
   3 ?    1.3   3.8      0.39   4.4e+02      17      49 ..     191     223 ..     170     237 .. 0.55

  Alignments for each domain:
  == domain 1  score: 3.4 bits;  conditional E-value: 0.088
      CC2-LZ  13 keeieeLkaqlqaaeealaakqeeidelkeeikkkeeele 52 
                 ++ + +L ++++++e  +++++++   ++ee+ kk ++l+
  KOO24519.1  89 NKRMGQLGREVEEKESEIQKEKQKATAMEEELVKKAQKLN 128
                 5678889999999999999999999999999999998887 PP

  == domain 2  score: 8.8 bits;  conditional E-value: 0.0019
      CC2-LZ   5 akeaekvkkeeieeLkaqlqaaeealaakqeeidelkeeikkkeeele....tisvlkaQaevYrsDFeaEReaReklhee....kerlaaqleel 92 
                  +e   +k ++++e  a+l +aeea ++ +e+i+el++e+++ ++el       ++ k  a+  r+D  a R a +k  e+    +e+l+a+ +e+
  KOO24519.1 116 MEEELVKKAQKLNETAARLGTAEEAKKTANEKIKELETEVRELKKELAkpppVPPMTKEEADKLRADVSAFRRAKDKAEEDlilrNEELQASAQEI 211
                 44555556999***********************************998884445779999**********9999998775222256666655554 PP

  == domain 3  score: 1.3 bits;  conditional E-value: 0.39
      CC2-LZ  17 eeLkaqlqaaeealaakqeeidelkeeikkkee 49 
                 ++ ++ l   +e l+a+ +ei  l+e i+k++ 
  KOO24519.1 191 DKAEEDLILRNEELQASAQEIALLNERIAKMNA 223
                 333444444555555555555555555555443 PP

>> SOGA  Protein SOGA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.7   0.7     0.028        32      30      87 ..      36      90 ..      25      92 .. 0.72
   2 ?    2.3  10.8      0.34   3.8e+02      26      94 ..      95     157 ..      89     163 .. 0.51
   3 ?   10.7   9.2   0.00081       0.9      16      93 ..     141     226 ..     133     227 .. 0.74

  Alignments for each domain:
  == domain 1  score: 5.7 bits;  conditional E-value: 0.028
        SOGA 30 nkqlteeLnkyksklgeeessleeeeeassdsskeaelkeeLklarlqineLsgkvvk 87
                + ++  eL+k + ++   es++e+    + ++++++   ++++ +r + ++L gk+ k
  KOO24519.1 36 EPSVDPELAK-RIETTVAESASED--LVEPAAKHKTRSTDRIREVRTEEKKLYGKINK 90
                5556666666.4444444444444..6777777889999****************976 PP

  == domain 2  score: 2.3 bits;  conditional E-value: 0.34
        SOGA  26 leeenkqlteeLnkyksklgeeessleeeeeassdsskeaelkeeLklarlqineLsgkvvkLqvenrv 94 
                 l +e ++ ++e++k k k+ + e++l +      +++k +e+  +L +a++  ++ + k+++L+ e r 
  KOO24519.1  95 LGREVEEKESEIQKEKQKATAMEEELVK------KAQKLNETAARLGTAEEAKKTANEKIKELETEVRE 157
                 4444555555666655555555544444......44444555555555555555555555555555543 PP

  == domain 3  score: 10.7 bits;  conditional E-value: 0.00081
        SOGA  16 aeLlrrslseleeenkqlteeLnkyksklgeeessleeee........eassdsskeaelkeeLklarlqineLsgkvvkLqvenr 93 
                  +    ++ ele e ++l++eL+k    +  +++++++          ++++++++    +eeL+++ ++i  L+ ++ k++ e++
  KOO24519.1 141 KKTANEKIKELETEVRELKKELAKPPPVPPMTKEEADKLRadvsafrrAKDKAEEDLILRNEELQASAQEIALLNERIAKMNAEKK 226
                 4455679****************987766665555544336788886444444444455689*********************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (242 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      3153  (0.17586); expected 358.6 (0.02)
Passed bias filter:                      797  (0.0444531); expected 358.6 (0.02)
Passed Vit filter:                       158  (0.00881254); expected 17.9 (0.001)
Passed Fwd filter:                        79  (0.00440627); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              16  [number of targets reported over threshold]
# CPU time: 1.17u 0.33s 00:00:01.50 Elapsed: 00:00:00.48
# Mc/sec: 1516.42
//
Query:       KOO24520.1  [L=411]
Description: hypothetical protein Ctob_004896 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    4.8e-06   26.9   0.6    0.00047   20.4   0.1    2.3  2  Thioesterase   Thioesterase domain
  ------ inclusion threshold ------
      0.016   14.9   0.1      0.031   13.9   0.1    1.4  1  Abhydrolase_1  alpha/beta hydrolase fold


Domain annotation for each model (and alignments):
>> Thioesterase  Thioesterase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.5   0.0    0.0035        32      11      61 ..       4      55 ..       2      64 .. 0.86
   2 !   20.4   0.1   5.2e-08   0.00047      60     132 ..     122     194 ..     114     203 .. 0.80

  Alignments for each domain:
  == domain 1  score: 4.5 bits;  conditional E-value: 0.0035
                  CCSGGGHHHHHHCTTC...EEEEEEECSTTSTSHHHCTTCHHHHHHHHHHHHHH CS
  Thioesterase 11 Gsasvfrslasklsdp...vvevlavqlpgrerdepplesieelaaeyaealrq 61
                  G  +vf+ l   ++++   ++e ++++  g+  +e+ ++s++ la  yaea++q
    KOO24520.1  4 GTGAVFAALVPLIPTTamyYCEHNTLYTGGA--PESYAQSLGGLARLYAEAIKQ 55
                  7788999999999998776777777777777..9******************98 PP

  == domain 2  score: 20.4 bits;  conditional E-value: 5.2e-08
                   HHH-SSSSEEEEEETHHHHHHHHHHHHHHHCT-SEEEEEEESCCCCCCHHCHHCCCHTTHHTHHHHHCCTTHH CS
  Thioesterase  60 rqiqpegPyalfGhSlGgllAfevArqLesqGlavkslflidssapseteaqeasrraedeefveeltdlggt 132
                      + eg ++l+G S Gg++A ++A   ++ G + ++l+l d  +p +  a+     ++ e++ ++l +++++
    KOO24520.1 122 PGAHGEGYFDLIGGSWGGYMAHQIALVAQQIGAPCRRLVLLDPNPPTVGRAPSLAPSTAREAVHALLATMLDA 194
                   56688999**********************************9999995555555555555577777777766 PP

>> Abhydrolase_1  alpha/beta hydrolase fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.1   3.5e-06     0.031      75     128 ..     130     192 ..     123     207 .. 0.76

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 3.5e-06
                    EEEEEETHHHHHHHHHHHHH...GGGEEEEEEESE......CSSCCHHHHHHHHHHHHHHCHH CS
  Abhydrolase_1  75 ltlvGhSmGGmialayaaey...perVkalvllga......idpaaslieaqrqqaksfpdff 128
                    + l+G+S+GG +a + a+ +     ++++lvll++       +p+ +++ a +   + + +++
     KOO24520.1 130 FDLIGGSWGGYMAHQIALVAqqiGAPCRRLVLLDPnpptvgRAPSLAPSTAREAVHALLATML 192
                    569**************99999999**********7777766666666655555555555554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (411 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       422  (0.0235373); expected 358.6 (0.02)
Passed bias filter:                      311  (0.0173462); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.46u 0.25s 00:00:00.71 Elapsed: 00:00:00.40
# Mc/sec: 3057.07
//
Query:       KOO24521.1  [L=145]
Description: hypothetical protein Ctob_004906 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
  ------ inclusion threshold ------
      0.079   13.0   0.0      0.079   13.0   0.0    1.2  1  Methyltransf_21  Methyltransferase FkbM domain


Domain annotation for each model (and alignments):
>> Methyltransf_21  Methyltransferase FkbM domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.0   4.4e-06     0.079      89     129 ..      30      67 ..       4     145 .] 0.77

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 4.4e-06
  Methyltransf_21  89 gedaryievpvvtldsfleeikksridllkiDvEGaElevL 129
                      +++ r  +vp++ l ++l+ +   r+dllkiDv+  E   L
       KOO24521.1  30 QRRLRNWKVPTMPLEQLLRGR---RVDLLKIDVDSIEGALL 67 
                      556666789**********99...********986666555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (145 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       274  (0.0152825); expected 358.6 (0.02)
Passed bias filter:                      258  (0.0143901); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.25s 00:00:00.62 Elapsed: 00:00:00.40
# Mc/sec: 1080.38
//
Query:       KOO24522.1  [L=682]
Description: hypothetical protein Ctob_004905 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
        7.9    6.4  17.7        3.2    7.7   8.4    2.2  2  TFIIA     Transcription factor IIA, alpha/beta subunit


Domain annotation for each model (and alignments):
>> TFIIA  Transcription factor IIA, alpha/beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.7   8.4   0.00018       3.2     211     342 ..     145     283 ..      72     307 .. 0.54
   2 ?    4.1   1.8    0.0021        38     251     298 ..     484     532 ..     452     623 .. 0.58

  Alignments for each domain:
  == domain 1  score: 7.7 bits;  conditional E-value: 0.00018
       TFIIA 211 qqqvqqqqqeesqqaqqasqeqvagsqvessqtdgaedaleeespv...legelsaeeeagaqkeelsreeidri.re........ealkakelekesk 297
                 ++q +qqq ee q+ ++a   ++  +++e++++d +e a++ +++v      + ++ + a      ++r+eid+i           e++k +e +++++
  KOO24522.1 145 REQREQQQAEERQRLTEA---KTRANKMEQKSRDLKEAAEQRRAEVyaiNTLMAARDDGAFRVFVAARRSEIDAIeARhdremaefEESKGREAQAKEA 240
                 111111111111222222...333355656666655555555555565334444455555667778888899988433455554443333332222222 PP

       TFIIA 298 kkkraeessla.........dlseilqlDGagddsdeeeeeeesdedsdsessd 342
                 +         +          ++  lq   ++ +s +  + e s +++ +++++
  KOO24522.1 241 AI--------QkrlraasdeVARARLQAEAEAAESVK--GRE-SRKEEIRTKEE 283
                 21........122333333245556666666666666..233.33333322222 PP

  == domain 2  score: 4.1 bits;  conditional E-value: 0.0021
       TFIIA 251 eeespv.legelsaeeeagaqkeelsreeidri.reealkakelekeskk 298
                 ++++   ++ ++++e+e++a+ e+ ++e+ +++ + e  +a+++++++  
  KOO24522.1 484 RKAA-TvWQQQQQQEKERHARREHKREETFHAReEREIFRAQVYAMNRLF 532
                 2222.136666666666666655555555555533333333333333311 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (682 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2114  (0.11791); expected 358.6 (0.02)
Passed bias filter:                      516  (0.0287802); expected 358.6 (0.02)
Passed Vit filter:                        74  (0.00412739); expected 17.9 (0.001)
Passed Fwd filter:                        25  (0.00139439); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.89u 0.28s 00:00:01.17 Elapsed: 00:00:00.45
# Mc/sec: 4580.08
//
Query:       KOO24523.1  [L=474]
Description: bola-like protein 2-like protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    9.2e-24   83.6   1.0    1.4e-06   28.6   0.1    3.3  3  PDZ          PDZ domain
      2e-17   62.8   3.1    0.00015   21.5   0.1    3.4  3  PDZ_6        PDZ domain
    1.5e-15   57.2   1.7    0.00021   21.5   0.1    3.3  3  PDZ_2        PDZ domain
      9e-14   51.5   0.0    2.2e-13   50.2   0.0    1.6  1  BolA         BolA-like protein
    3.3e-05   23.8   2.2       0.61   10.1   0.1    3.9  3  Tricorn_PDZ  Tricorn protease PDZ domain
  ------ inclusion threshold ------
      0.031   14.6   0.1         16    5.9   0.0    3.2  3  PDZ_4        PDZ domain


Domain annotation for each model (and alignments):
>> PDZ  PDZ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.6   0.1   4.6e-10   1.4e-06       8      80 ..     216     284 ..     204     286 .. 0.72
   2 !   28.3   0.0   5.5e-10   1.6e-06       2      81 ..     292     366 ..     291     367 .. 0.89
   3 !   23.6   0.1   1.6e-08   4.8e-05      11      71 ..     383     440 ..     373     450 .. 0.81

  Alignments for each domain:
  == domain 1  score: 28.6 bits;  conditional E-value: 4.6e-10
                 TTSESSEEEEEETTSSSSSSEEEEEECTTSHHHHHTSSTTEEEEEETTEETTTSHHHHHHHHHHTTTSEEEEE CS
         PDZ   8 grgglGfslkggsdqrgdkgifvsevlpggaaeadglkvGDkIlsvNgvdvenvsheeavqaikgskgkvtLt 80 
                 ++ + G++l+         g++vs ++p g a++ gl+vGD++ +++g+ v+++    +++ +   +  +tLt
  KOO24523.1 216 KEPKHGIKLQTHPT----LGVIVSGLNPTGQAARNGLNVGDQLRAIDGEEVKSHVAAMQILDMAAEGRRLTLT 284
                 44455666666666....5**********9999999****************994444444444444477776 PP

  == domain 2  score: 28.3 bits;  conditional E-value: 5.5e-10
                 EEEETSTTSESSEEEEEETTSSSSSSEEEEEECTTSHHHHHTSSTTEEEEEETTEETTTSHHHHHHHHHHTTTSEEEEEE CS
         PDZ   2 vslekegrgglGfslkggsdqrgdkgifvsevlpggaaeadglkvGDkIlsvNgvdvenvsheeavqaikgskgkvtLti 81 
                 v+l k ++g lG++ +      + +g+  +++ +g+ a+a+ +  GD I++vN + v ++  e+av ++ ++ g+v+L++
  KOO24523.1 292 VTLDK-TKGDLGMTCSNLAH--TTRGVLLKRIRRGSLADAAAIYCGDTIIAVNEQLVDSH--EQAVSLMNECLGEVRLVL 366
                 56677.89999999998777..56***********8888888****************87..***************986 PP

  == domain 3  score: 23.6 bits;  conditional E-value: 1.6e-08
                 ESSEEEEEETTSSSSSSEEEEEECTTSHHHHHTSSTTEEEEEETTEETTTSHHHHHHHHHH CS
         PDZ  11 glGfslkggsdqrgdkgifvsevlpggaaeadglkvGDkIlsvNgvdvenvsheeavqaik 71 
                 +lG++++ ++   g +g+ v +v+  g   ++g++vGD +lsv+gv   n+   +av++++
  KOO24523.1 383 PLGITVVDQDR-VGRPGVKVEKVVTHGLVFKAGISVGDTLLSVDGVICINH--VQAVALLT 440
                 799***97555.58************9999999************887776..55555554 PP

>> PDZ_6  PDZ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.3   0.2   2.5e-07   0.00076       2      53 ..     234     284 ..     233     285 .. 0.89
   2 !   20.6   0.0   9.8e-08   0.00029       4      54 ..     319     367 ..     317     367 .. 0.92
   3 !   21.5   0.1     5e-08   0.00015       2      43 ..     401     440 ..     400     448 .. 0.88

  Alignments for each domain:
  == domain 1  score: 19.3 bits;  conditional E-value: 2.5e-07
       PDZ_6   2 VtaVdpgsPAdrAGlrvGDiilsvNGqpveglsladvaallr.gsagesvvlv 53 
                 V+   p + A+r Gl vGD++ +++G++v  +s + + ++l  +++g++++l+
  KOO24523.1 234 VSGLNPTGQAARNGLNVGDQLRAIDGEEV--KSHVAAMQILDmAAEGRRLTLT 284
                 5666677889*******************..**********999999999886 PP

  == domain 2  score: 20.6 bits;  conditional E-value: 9.8e-08
       PDZ_6   4 aVdpgsPAdrAGlrvGDiilsvNGqpveglsladvaallrgsagesvvlvv 54 
                  +  gs Ad A +  GD+i++vN q v   s +++++l+ +  ge   +++
  KOO24523.1 319 RIRRGSLADAAAIYCGDTIIAVNEQLV--DSHEQAVSLMNECLGEVRLVLW 367
                 5778***********************..***********99999888776 PP

  == domain 3  score: 21.5 bits;  conditional E-value: 5e-08
       PDZ_6   2 VtaVdpgsPAdrAGlrvGDiilsvNGqpveglsladvaallr 43 
                 V+ V++++   +AG+ vGD++lsv+G+ +   + ++++all 
  KOO24523.1 401 VEKVVTHGLVFKAGISVGDTLLSVDGVIC--INHVQAVALLT 440
                 789999**********************9..88888888886 PP

>> PDZ_2  PDZ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.5   0.1   7.1e-08   0.00021      10      69 ..     226     285 ..     208     295 .. 0.87
   2 !   15.2   0.0   6.5e-06     0.019       1      56 [.     299     355 ..     299     359 .. 0.90
   3 !   17.7   0.4   1.1e-06    0.0034       3      63 ..     384     446 ..     383     459 .. 0.91

  Alignments for each domain:
  == domain 1  score: 21.5 bits;  conditional E-value: 7.1e-08
                 ---..-EEEEEE-TTSGGGGT.--TT-EEEEETTB--SSHHHHHHHHHTS-TT-EEEEEE CS
       PDZ_2  10 eedtggvlvvsVkeggPaakaglkagDvilkvdgkkvksledlislllkkkpGdtVkltv 69 
                  ++t gv+v   ++ g aa+ gl  gD++ ++dg +vks     + l  + +G+ ++lt 
  KOO24523.1 226 THPTLGVIVSGLNPTGQAARNGLNVGDQLRAIDGEEVKSHVAAMQILDMAAEGRRLTLTA 285
                 33489**********************************999999999999999999985 PP

  == domain 2  score: 15.2 bits;  conditional E-value: 6.5e-06
                 ....XX------...-EEEEEE-TTSGGGGT.--TT-EEEEETTB--SSHHHHHHHH CS
       PDZ_2   1 pylGvsvsdeed.tggvlvvsVkeggPaakaglkagDvilkvdgkkvksledlisll 56 
                 ++lG + s++   t+gvl   ++ g+ a++a +  gD+i++v+++ v+s e+  sl+
  KOO24523.1 299 GDLGMTCSNLAHtTRGVLLKRIRRGSLADAAAIYCGDTIIAVNEQLVDSHEQAVSLM 355
                 689999999887799999999***************************999988776 PP

  == domain 3  score: 17.7 bits;  conditional E-value: 1.1e-06
                 ..XX------....-EEEEEE-TTSGGGGT.--TT-EEEEETTB--SSHHHHHHHHHTS-TT- CS
       PDZ_2   3 lGvsvsdeed..tggvlvvsVkeggPaakaglkagDvilkvdgkkvksledlislllkkkpGd 63 
                 lG++v+d+++    gv v +V   g   kag+  gD++l+vdg+   +  +   ll +k+p++
  KOO24523.1 384 LGITVVDQDRvgRPGVKVEKVVTHGLVFKAGISVGDTLLSVDGVICINHVQAVALLTRKDPNT 446
                 8*******998899******************************9999999999999888887 PP

>> BolA  BolA-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.2   0.0   7.5e-17   2.2e-13       5      75 ..      17      78 ..      14      79 .. 0.90

  Alignments for each domain:
  == domain 1  score: 50.2 bits;  conditional E-value: 7.5e-17
        BolA  5 lkpehlevedeShkhaghaeaggetHFkvvivseaFegkslvarhRlvyalLkeelakgiHALslktktpe 75
                l peh+ev+d S        +g+++ F+  +vs+aF+g+ l++r+R+v+++++e +++ iHA+s+kt+tp+
  KOO24523.1 17 LVPEHVEVVDTS--------DGCGSKFEAIVVSAAFDGMGLLDRQRAVNDVIAEPMKA-IHAFSMKTWTPK 78
                667777777777........478899********************************.**********97 PP

>> Tricorn_PDZ  Tricorn protease PDZ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.1   0.1    0.0002      0.61      35      78 ..     245     285 ..     238     294 .. 0.71
   2 !    6.3   0.0    0.0031       9.1      40      77 ..     331     367 ..     307     375 .. 0.76
   3 ?    4.5   0.1     0.011        33      34      67 ..     411     442 ..     376     454 .. 0.80

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.0002
                  GGS---.TT-EEEEETTEE-BTTB-HHHHHHTTTTSEEEEEEE- CS
  Tricorn_PDZ  35 epGvnvreGdlilavdgepvskekgiaelLvgkagkeveLtvkr 78 
                  + G+n  +Gd + a+dge+v+++    ++L  +a+   +Lt+++
   KOO24523.1 245 RNGLN--VGDQLRAIDGEEVKSHVAAMQILDMAAE-GRRLTLTA 285
                  56888..7*************99888888765554.44555544 PP

  == domain 2  score: 6.3 bits;  conditional E-value: 0.0031
                  -.TT-EEEEETTEE-BTTB-HHHHHHTTTTSEEEEEEE CS
  Tricorn_PDZ  40 vreGdlilavdgepvskekgiaelLvgkagkeveLtvk 77 
                  +  Gd+i+av+ + v+++++  +l+ +  g ev+L + 
   KOO24523.1 331 IYCGDTIIAVNEQLVDSHEQAVSLMNECLG-EVRLVLW 367
                  568*************99888777766666.7777765 PP

  == domain 3  score: 4.5 bits;  conditional E-value: 0.011
                  GGGS---.TT-EEEEETTEE-BTTB-HHHHHHTT CS
  Tricorn_PDZ  34 aepGvnvreGdlilavdgepvskekgiaelLvgk 67 
                   + G+   +Gd++l+vdg+   ++ +   lL+ k
   KOO24523.1 411 FKAGIS--VGDTLLSVDGVICINHVQAVALLTRK 442
                  567888..7*********9877666666666655 PP

>> PDZ_4  PDZ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.9   0.0    0.0055        16      27      55 ..     246     274 ..     237     300 .. 0.83
   2 ?    0.0   0.0      0.37   1.1e+03      28      48 ..     330     350 ..     324     404 .. 0.71
   3 ?    4.1   0.0      0.02        60      26      60 ..     412     446 ..     401     457 .. 0.75

  Alignments for each domain:
  == domain 1  score: 5.9 bits;  conditional E-value: 0.0055
                 SSS-TT-EEEEETTEEHHHHHHTTS-TT- CS
       PDZ_4  27 lelkvGDellefdgkpvkevveelkeseh 55 
                   l+vGD l ++dg++vk  v+ ++  ++
  KOO24523.1 246 NGLNVGDQLRAIDGEEVKSHVAAMQILDM 274
                 5689***************9999886665 PP

  == domain 2  score: 0.0 bits;  conditional E-value: 0.37
                 SS-TT-EEEEETTEEHHHHHH CS
       PDZ_4  28 elkvGDellefdgkpvkevve 48 
                  +  GD +++++++ v+   +
  KOO24523.1 330 AIYCGDTIIAVNEQLVDSHEQ 350
                 577899999999998765444 PP

  == domain 3  score: 4.1 bits;  conditional E-value: 0.02
                 SSSS-TT-EEEEETTEEHHHHHHTTS-TT----HH CS
       PDZ_4  26 klelkvGDellefdgkpvkevveelkesehknsat 60 
                 k  ++vGD ll++dg    + v+ +    +k+ +t
  KOO24523.1 412 KAGISVGDTLLSVDGVICINHVQAVALLTRKDPNT 446
                 6789***********98877777776666665555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (474 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       305  (0.0170115); expected 358.6 (0.02)
Passed bias filter:                      262  (0.0146132); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.51u 0.25s 00:00:00.76 Elapsed: 00:00:00.43
# Mc/sec: 3344.86
//
Query:       KOO24524.1  [L=639]
Description: calcium-dependent protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.1e-67  228.2   0.0    1.5e-67  227.8   0.0    1.2  1  Pkinase         Protein kinase domain
    5.3e-38  130.8   0.0    7.8e-38  130.2   0.0    1.2  1  Pkinase_Tyr     Protein tyrosine kinase
    4.4e-16   58.7   0.0      1e-15   57.6   0.0    1.6  1  cNMP_binding    Cyclic nucleotide-binding domain
    4.2e-06   27.1   0.0    9.4e-06   26.0   0.0    1.7  1  EF-hand_7       EF-hand domain pair
    7.2e-06   25.5   0.0    1.6e-05   24.3   0.0    1.5  1  Kdo             Lipopolysaccharide kinase (Kdo/WaaP) family
    7.3e-05   22.5   0.0     0.0038   17.0   0.0    2.9  3  EF-hand_8       EF-hand domain pair
     0.0041   16.5   0.0     0.0074   15.6   0.0    1.4  1  Kinase-like     Kinase-like
     0.0099   14.7   0.0      0.026   13.3   0.0    1.6  2  Pkinase_fungal  Fungal protein kinase
  ------ inclusion threshold ------
      0.012   15.6   0.1       0.05   13.5   0.1    2.0  1  APH             Phosphotransferase enzyme family
       0.07   13.1   0.0       0.81    9.8   0.0    2.4  2  EF-hand_6       EF-hand domain


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  227.8   0.0   8.3e-71   1.5e-67       1     264 []      96     358 ..      96     358 .. 0.92

  Alignments for each domain:
  == domain 1  score: 227.8 bits;  conditional E-value: 8.3e-71
                 EEEEEEEEEESSEEEEEEEETTTTEEEEEEEEECHCHCHHHHHHHHHHHHHHHHHS.CTTB--EEEEEEESSEEEEEEE--TTEBHHHHHHHHSS--HH CS
     Pkinase   1 yekleklGeGsfGkVykaveketgkivAvKkikkekakkkkekkvlrEikilkklk.hpnivrlyevfeekdelylvleyveggeladllerkgslsee 98 
                 ye+   +G G f++V ++v++e+g+ vA+K+i+k++++    ++++rEi+i + +  h+n v l +vfe+++e ++v+e+v ggel+++l ++g +se+
  KOO24524.1  96 YEVGDVIGCGHFATVRRGVNRESGEAVAIKTIAKSRTDA---STIRREIAIQRMVGsHENMVGLRDVFETESEWIIVMELVTGGELFERLVTQGPYSEK 191
                 788899*****************************9998...459**********99****************************************** PP

                 HHHHHHHHHHHHHHHHHHTTEE-SS-SGGGEEEET.TTE.....EEE-SGTTSEESSSSCS..BCTTTSCGGGS-HHHHTTSCBSHHHHHHHHHHHHHH CS
     Pkinase  99 eakkiakqilegleylHskgiiHrDlKpeNiLide.kge.....lKitDFGlakelesssk..ltsfvgtseYlAPEvlkeneyskkvDvWslGvilye 189
                 ea+++++q+++g+++lH +gi+HrDlKpeN+L++e +g      +Ki+DFGl+  l+++    l++  gt  Y APE+  +++y+k+vD+WslGvi+y 
  KOO24524.1 192 EASRLMRQLAQGVAWLHLNGICHRDLKPENLLLSEpDGAtgevtVKICDFGLSVALKEEDGdtLQEKQGTWAYWAPEMFATHGYGKQVDLWSLGVIMYI 290
                 **********************************5344467788************9988788************************************ PP

                 HHHSS-STTTSSHHHHHHHHHHTHHHHHHHCTSHH...HHHTTS-HHHHHHHHHHT-SSGCCSTTHHHHHTSGGG CS
     Pkinase 190 lltgkppfsgekgkekvekeldqlekilkilgetkeklpeaseiseeakdllkkllkkdpkkRltaeellqhpyl 264
                 ll+g++pf +  +++   ++++q  +i+   g+ +++ ++++ +seeak+l++ ll+ +p++R++ e+ll + ++
  KOO24524.1 291 LLAGQHPFDAPGRTD---AQMRQ--NIQ--AGQLSFAHEQWTAVSEEAKQLIRALLRHEPRERMSSEMLLTQAWI 358
                 *********666555...44444..111..3588999**********************************9996 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  130.2   0.0   4.4e-41   7.8e-38       3     255 ..      98     352 ..      96     355 .. 0.89

  Alignments for each domain:
  == domain 1  score: 130.2 bits;  conditional E-value: 4.4e-41
                  EEEEEEEESSEEEEEEEEETTTTSSEEEEEEEEESTTSSHHHHHHHHHHHHHHHTS.-BTTB--EEEEEESSSSEEEEEE--TTEBHHHHHHHTCTTT CS
  Pkinase_Tyr   3 lgkklGeGafGkVvegtlkgekekkevkVavKtlkeeateeekeelleeakimkkl.khpnivkllgvctkeepllivteyvkgGdLlkfLrkkekek 99 
                  +g+ +G G+f++V +g  +    ++ + Va+Kt+ ++ t+   + + +e++i + + +h+n+v l  v   e++ +iv+e+v+gG+L + L ++   +
   KOO24524.1  98 VGDVIGCGHFATVRRGVNR----ESGEAVAIKTIAKSRTDA--STIRREIAIQRMVgSHENMVGLRDVFETESEWIIVMELVTGGELFERLVTQ--GP 187
                  6789*************99....8899*******7666655..8999*********************************************98..99 PP

                  SBHHHHHHHHHHHHHHHHHHHHTTEEEST-SGGGEEEEE......TTEEEE-STTTHEETTTSSEEEETTSSTSGGGGS-HHHHHHSEEEHHHHHHHH CS
  Pkinase_Tyr 100 ltlkdllsfalqvAkGmeyLeskklvHrdlaarNvLlse......nkvvkisDfGLardiekddeyvkkeeaklpvkWmapEslkekkftsksDvWsf 191
                   + k+  +++ q+A+G+++L+ + + Hrdl   N Llse      + +vki+DfGL+ ++ k+++  + +e++    + apE++ ++ + ++ D Ws 
   KOO24524.1 188 YSEKEASRLMRQLAQGVAWLHLNGICHRDLKPENLLLSEpdgatgEVTVKICDFGLSVAL-KEEDGDTLQEKQGTWAYWAPEMFATHGYGKQVDLWSL 284
                  ***************************************99999888*************.555555666777888999******************* PP

                  HHHHHHHHTTSSGTT..TTSHHHHHHHHHHTTEE...S-BBTTSBHHHHHHHHHHT-SSGGGS--HHHH CS
  Pkinase_Tyr 192 GvllwEiftlgespy..pglkneevleklkegkr...lekpekcpeelyelmkkcweedpeeRptfsel 255
                  Gv+++ ++  g++p+  pg +++++ +++++g+     e+ + ++ee ++l++  ++++p+eR + + l
   KOO24524.1 285 GVIMYILLA-GQHPFdaPGRTDAQMRQNIQAGQLsfaHEQWTAVSEEAKQLIRALLRHEPRERMSSEML 352
                  *****7777.****7225569999*****9999722245556678999***************986665 PP

>> cNMP_binding  Cyclic nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.6   0.0   5.7e-19     1e-15       4      83 ..     505     590 ..     502     591 .. 0.87

  Alignments for each domain:
  == domain 1  score: 57.6 bits;  conditional E-value: 5.7e-19
                   E-TT-EEE-TTSB-SEEEEEEES-EEEEEEETTS.E.EEEE...EE-TTEEESHHHHH..HTS--SSEEEESSTEEEEEEEHHHHH CS
  cNMP_binding   4 fkagevifrqGdpadslyivlsGevrvyrlsedgke.vvla...vlgpGdlfGelall..tgeprtatvvAltdsellalprddfl 83 
                   f+ g+vifr+Gdp d +y+++sG+vr  ++ +  +    +a   +lg+Gd+fG+ a+l  ++ +r+ t++A+t++++++l rddf+
    KOO24524.1 505 FREGDVIFREGDPSDFFYLITSGRVRRLTRPPPERFeAFVAaeeELGAGDYFGTSAILgsGERKRHSTMIAMTEVRVVRLGRDDFE 590
                   899************************7555555542445478899************976666********************96 PP

>> EF-hand_7  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.0   0.0   5.2e-09   9.4e-06       2      69 ..     432     493 ..     431     495 .. 0.94

  Alignments for each domain:
  == domain 1  score: 26.0 bits;  conditional E-value: 5.2e-09
   EF-hand_7   2 eklkeaFkelDtdgdgyldkeellrllrkifqgagegsklsdeelellfkefDtdkdGvisfdEFlkl 69 
                 e l +aF+ +D  g gy+  ++l  +++      + g  +++ e+ +++  +D  ++G+i ++ +l++
  KOO24524.1 432 ELLADAFQVFDPEGKGYVAATDLAGVIQ------RLGQQMTPAEVSHMVSAMDEGGSGKIYYQQYLNM 493
                 56889*******************8999......9****************************99987 PP

>> Kdo  Lipopolysaccharide kinase (Kdo/WaaP) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.3   0.0   9.2e-09   1.6e-05      93     166 ..     167     241 ..     139     250 .. 0.88

  Alignments for each domain:
  == domain 1  score: 24.3 bits;  conditional E-value: 9.2e-09
         Kdo  93 lllterlegaqdLedllakwaelaeelkrallkavgrliaklhragvnHadlyaknillqqee..eeeaeiwliDl 166
                 ++++e ++g +  e l+++   ++e+   +l++++++ +a lh  g++H+dl + n+ll + +   +e ++ + D+
  KOO24524.1 167 IIVMELVTGGELFERLVTQ-GPYSEKEASRLMRQLAQGVAWLHLNGICHRDLKPENLLLSEPDgaTGEVTVKICDF 241
                 7999999999999999997.559*************************************9986666667777776 PP

>> EF-hand_8  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.3   0.0     0.088   1.6e+02      31      48 ..     437     454 ..     432     461 .. 0.80
   2 !   17.0   0.0   2.1e-06    0.0038      16      51 ..     460     493 ..     452     497 .. 0.84
   3 ?   -1.6   0.0       1.4   2.6e+03      26      36 ..     499     509 ..     490     510 .. 0.83

  Alignments for each domain:
  == domain 1  score: 2.3 bits;  conditional E-value: 0.088
   EF-hand_8  31 lfrefDtdgdGkisfeEF 48 
                  f  fD +g+G++  ++ 
  KOO24524.1 437 AFQVFDPEGKGYVAATDL 454
                 5999********977665 PP

  == domain 2  score: 17.0 bits;  conditional E-value: 2.1e-06
   EF-hand_8  16 ilglkkglseeevdilfrefDtdgdGkisfeEFcvl 51 
                  lg++  +++ ev ++++++D+ g+Gki +  ++++
  KOO24524.1 460 RLGQQ--MTPAEVSHMVSAMDEGGSGKIYYQQYLNM 493
                 46888..*********************77666665 PP

  == domain 3  score: -1.6 bits;  conditional E-value: 1.4
   EF-hand_8  26 eevdilfrefD 36 
                 +e ++lfre+D
  KOO24524.1 499 KEKETLFREGD 509
                 6899*****99 PP

>> Kinase-like  Kinase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.0   4.1e-06    0.0074     140     288 .]     189     346 ..     151     346 .. 0.69

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 4.1e-06
  Kinase-like 140 kletiarlllTlqlirlaanLqakglvhgkftvdnllldekgg......lmlggftaLvragtkv..vlseve..kgfaPpEllgsrggytrknktkm 227
                  ++++++rl+   ql + +a L+ +g+ h +++++nlll e  g      +++ +f+  v  +++    l e +   ++  pE+++   gy+       
   KOO24524.1 189 SEKEASRLMR--QLAQGVAWLHLNGICHRDLKPENLLLSEPDGatgevtVKICDFGLSVALKEEDgdTLQEKQgtWAYWAPEMFAT-HGYG------- 276
                  5555666555..889999********************985441222225566665433332222002222223366777777777.4444....... PP

  Kinase-like 228 thkldaWqlGlviyriwclklPltlateeakeew........kfklck..kipekvkaLlkkfLqlsqedR 288
                    ++d W lG+ +y + + + P++ +     +          +f + +   ++e+ k L++ +L+ + ++R
   KOO24524.1 277 -KQVDLWSLGVIMYILLAGQHPFDAPGRTDAQMRqniqagqlSFAHEQwtAVSEEAKQLIRALLRHEPRER 346
                  .589******************997643322222345777776666655599************9998887 PP

>> Pkinase_fungal  Fungal protein kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.3   0.0   1.5e-05     0.026     318     393 ..     203     275 ..     180     293 .. 0.76
   2 ?   -2.7   0.1         1   1.9e+03     217     315 ..     377     437 ..     307     441 .. 0.46

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 1.5e-05
  Pkinase_fungal 318 ghrsLflkagiLHrDiSenNilitds.kkegerkglLiDLDlakelsddssesgarertGTleFmaievlkgeeHsy 393
                     g   L+   gi HrD   +N+l+ ++   +ge +  + D+ l + l++ +  +  +e+ GT ++ a e+     H y
      KOO24524.1 203 GVAWLH-LNGICHRDLKPENLLLSEPdGATGEVTVKICDFGLSVALKE-EDGDTLQEKQGTWAYWAPEMFAT--HGY 275
                     445577.78*****************66779999*************7.45555699********9999984..444 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 1
  Pkinase_fungal 217 diaeiRkgldvtkaekfrskrkvvsssssqelsskaevklkksesskkvekrsvdssvstskrsr...........lenrvhrrlvispvGkpie 300
                     +++++Rk++++                                                     +            + rv   l + p  +p+e
      KOO24524.1 377 EYQRMRKKWSTALVA-------------------------------------------------SmhkqavirkrlSDRRVPPPLPTLPHSVPVE 422
                     222222222222221.................................................0111112222223445555555556666666 PP

  Pkinase_fungal 301 kaespkellealrDa 315
                     +a+   e+ e l+Da
      KOO24524.1 423 EADANVEARELLADA 437
                     666666666666665 PP

>> APH  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.1   2.8e-05      0.05     150     186 ..     195     229 ..     176     245 .. 0.75

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 2.8e-05
                 HHHHHHHHHH--SSS-EEEE-SS-SGGGEEEC..TTE CS
         APH 150 eqvlaalaallpgelptvllHgDlhpgNllvdpddgr 186
                 + ++++la+ ++     +++H+Dl+p Nll+  +++ 
  KOO24524.1 195 R-LMRQLAQGVAWLHLNGICHRDLKPENLLLS-EPDG 229
                 3.6666666666677789*************9.4444 PP

>> EF-hand_6  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   0.0   0.00045      0.81       2      30 ..     434     461 ..     433     462 .. 0.87
   2 ?   -0.1   0.0      0.64   1.2e+03       7      19 ..     475     487 ..     469     494 .. 0.81

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.00045
   EF-hand_6   2 lreaFklfDkdgdGkidaeElrkalrkal 30 
                 l +aF+ fD +g G++ a +l  +++  l
  KOO24524.1 434 LADAFQVFDPEGKGYVAATDLAGVIQ-RL 461
                 568*****************999887.45 PP

  == domain 2  score: -0.1 bits;  conditional E-value: 0.64
   EF-hand_6   7 klfDkdgdGkida 19 
                  ++D  g+Gki +
  KOO24524.1 475 SAMDEGGSGKIYY 487
                 689*******955 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (639 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       597  (0.033298); expected 358.6 (0.02)
Passed bias filter:                      503  (0.0280551); expected 358.6 (0.02)
Passed Vit filter:                        54  (0.00301188); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.61u 0.28s 00:00:00.89 Elapsed: 00:00:00.43
# Mc/sec: 4437.03
//
Query:       KOO24525.1  [L=403]
Description: leucine rich repeat protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    4.6e-11   42.3   0.6    2.4e-06   27.2   0.0    2.0  2  LRR_8          Leucine rich repeat
    6.8e-07   29.5   0.9    6.2e-05   23.3   0.0    2.3  2  LRR_4          Leucine Rich repeats (2 copies)
  ------ inclusion threshold ------
      0.017   14.8   2.7      0.031   13.9   2.7    1.3  1  DUF4559        Domain of unknown function (DUF4559)
      0.026   14.3   0.1      0.092   12.5   0.1    1.9  1  Bclx_interact  Bcl-x interacting, BH3 domain
      0.042   13.3   2.5      0.066   12.7   0.2    2.0  2  LRR_9          Leucine-rich repeat


Domain annotation for each model (and alignments):
>> LRR_8  Leucine rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.2   0.0   6.7e-10   2.4e-06       5      61 .]     249     303 ..     246     303 .. 0.97
   2 !   21.4   0.1   4.5e-08   0.00016       6      61 .]     273     327 ..     273     327 .. 0.90

  Alignments for each domain:
  == domain 1  score: 27.2 bits;  conditional E-value: 6.7e-10
                 EEE-TTS--SEE-TTSSTT-TT--EEE--SS---GGGGGGGTT--S-.EEE--SS-- CS
       LRR_8   5 sLdLsnNrltslddeaFkglsnLkvLdLsnNllttlspgafsgLpsLrsLdLsgNrL 61 
                 +L+L++ +l + + e F+ l++++ LdL +N+lt l pg   +++++++++L++N++
  KOO24525.1 249 VLSLRKQKLLAAPIEIFQ-LTHVEFLDLAENKLTEL-PGEVTQMTRIKKIYLDRNQI 303
                 799***************.*****************.9*****************98 PP

  == domain 2  score: 21.4 bits;  conditional E-value: 4.5e-08
                 EE-TTS--SEE-TTSSTT-TT--EEE--SS---GGGGGGGTT--S.-.EEE--SS-- CS
       LRR_8   6 LdLsnNrltslddeaFkglsnLkvLdLsnNllttlspgafsgLps.LrsLdLsgNrL 61 
                 LdL  N+lt+l+ e+ + +++ k ++L +N++t+l p+ +  L++ L+ L + +N+L
  KOO24525.1 273 LDLAENKLTELPGEVTQ-MTRIKKIYLDRNQITRL-PHELYKLSNtLTLLGIADNPL 327
                 89**************9.*****************.899999976588888888876 PP

>> LRR_4  Leucine Rich repeats (2 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.3   0.0   1.7e-08   6.2e-05       2      40 ..     269     307 ..     268     315 .. 0.84
   2 !   12.7   0.2   3.7e-05      0.13       2      36 ..     292     327 ..     291     333 .. 0.87

  Alignments for each domain:
  == domain 1  score: 23.3 bits;  conditional E-value: 1.7e-08
                 S--EEE--SS---E-S-HH.H-TT--EEE-.-S-----GG CS
       LRR_4   2 nLevLdLsnNqltdiplle.klpnLkeLdLsgNnlitdld 40 
                 + e+LdL+ N+lt++p+   +++  k+++L +N +it+l+
  KOO24525.1 269 HVEFLDLAENKLTELPGEVtQMTRIKKIYLDRN-QITRLP 307
                 789**************5537*********777.999884 PP

  == domain 2  score: 12.7 bits;  conditional E-value: 3.7e-05
                 S--EEE--SS---E-S-.HHH-TT.--EEE-.-S--- CS
       LRR_4   2 nLevLdLsnNqltdipl.leklpn.LkeLdLsgNnli 36 
                 + ++++L  Nq+t +p  l+kl n L+ L + +N ++
  KOO24525.1 292 RIKKIYLDRNQITRLPHeLYKLSNtLTLLGIADN-PL 327
                 6799*************999***********888.54 PP

>> DUF4559  Domain of unknown function (DUF4559)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   2.7   8.7e-06     0.031     158     304 ..     150     306 ..     146     313 .. 0.79

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 8.7e-06
     DUF4559 158 dlkvssqdmkeymkkilrLledlktvpeleeaeeaieellkilkqefeislke.ddevrvltdvllslqklkeleeellkedat............kld 243
                 +l+++++  + y +++++L + ++ v + + a ++ie+   i +++ +++ ++  +++r+++d ++s++  + +e +++ + +t             l+
  KOO24525.1 150 ELELQKEGTHMYLETLKELTR-IELVYDAVVALKKIEQERPIRESDIAVEYNKvAAQSRIESDKIMSQEAALARELRAIGD-GTetivayslrlehCLE 246
                 78999999999********99.7899999999******99*************8999************************.56688999996666555 PP

     DUF4559 244 elvlraeeqkiskeellkelqvl.keflnknkd.Lkenlkedvkklqeieekldkldedvtel 304
                 + vl+  +qk++   + + +q +  efl+  ++ L+  l  +v+++++i+ k+    +++t l
  KOO24525.1 247 TNVLSLRKQKLLAAPI-EIFQLThVEFLDLAENkLT-ELPGEVTQMTRIK-KIYLDRNQITRL 306
                 5556666666555555.4455442589998888566.8888889988888.666666666655 PP

>> Bclx_interact  Bcl-x interacting, BH3 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.1   2.6e-05     0.092       4      28 ..     204     229 ..     202     235 .. 0.91

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 2.6e-05
                    XXXXXXXX-.--HHHHHHHHHHHHHH CS
  Bclx_interact   4 rqsrsePvd.lrPEiwiAqELRRIGD 28 
                    +qsr e  + ++ E   A+ELR IGD
     KOO24525.1 204 AQSRIESDKiMSQEAALARELRAIGD 229
                    689999988999*************9 PP

>> LRR_9  Leucine-rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.1   0.2      0.13   4.8e+02     108     164 ..     161     216 ..     148     224 .. 0.76
   2 ?   12.7   0.2   1.8e-05     0.066      44     101 ..     270     328 ..     232     344 .. 0.82

  Alignments for each domain:
  == domain 1  score: 0.1 bits;  conditional E-value: 0.13
       LRR_9 108 Plaslkklellsllknpvtnkkeyrlyviyklkqlrlldfrkvklkereeaeklfks 164
                  l +lk+l+ + l+  +v++ k+  +    +  ++  ++++kv  + r e++k+++ 
  KOO24525.1 161 YLETLKELTRIELVYDAVVALKKIEQERPIRESDIA-VEYNKVAAQSRIESDKIMSQ 216
                 578899999999999998888887777777777787.79999999999998887654 PP

  == domain 2  score: 12.7 bits;  conditional E-value: 1.8e-05
       LRR_9  44 fdtidlsdndirkldg.fPllkrlktlllnnnrivriaegleevlPnleelvltnnelq 101
                  + +dl++n++ +l g +  + r+k ++l+ n+i+r+ ++l +   +l+ l +++n l+
  KOO24525.1 270 VEFLDLAENKLTELPGeVTQMTRIKKIYLDRNQITRLPHELYKLSNTLTLLGIADNPLD 328
                 45589999***999764789**********************99999999988888765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (403 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       609  (0.0339673); expected 358.6 (0.02)
Passed bias filter:                      438  (0.0244297); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.45u 0.25s 00:00:00.70 Elapsed: 00:00:00.37
# Mc/sec: 3240.40
//
Query:       KOO24526.1  [L=431]
Description: hypothetical protein Ctob_004901 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (431 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       550  (0.0306766); expected 358.6 (0.02)
Passed bias filter:                      388  (0.0216409); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.49u 0.21s 00:00:00.70 Elapsed: 00:00:00.38
# Mc/sec: 3433.38
//
Query:       KOO24527.1  [L=396]
Description: hypothetical protein Ctob_004900 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    0.00068   19.0  17.8    0.00094   18.5  17.8    1.1  1  Lung_7-TM_R  Lung seven transmembrane receptor
    0.00089   18.7   6.6    0.00089   18.7   6.6    1.6  1  GpcrRhopsn4  Rhodopsin-like GPCR transmembrane domain


Domain annotation for each model (and alignments):
>> Lung_7-TM_R  Lung seven transmembrane receptor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.5  17.8     1e-07   0.00094      47     289 ..      31     267 ..      26     270 .. 0.75

  Alignments for each domain:
  == domain 1  score: 18.5 bits;  conditional E-value: 1e-07
  Lung_7-TM_R  47 llklylimalayvllgilWlf.ilakykkdilkiqkliaavivlkmlelafvyieYatin.skGssievlavlasilsalkktlsrlliliislGygi 142
                   +++y+  + +++++ ++W++ i++ +++   ++++++  + +l+++  ++++++Y++   + G++  v a +++++  l++ ++ + +l+++ G+ i
   KOO24527.1  31 SPYVYAAALPIWLVFLVWWSHdIYFVHRQHAHELHHMLWCIPALSAVFSLLSICYYEMCPwDLGYQQLVSAAWVVLV-ILREPVFVVCLLMVAKGWRI 127
                  56789999999*********97899********************************98736688888888888776.6799999************* PP

  Lung_7-TM_R 143 vkpkLgdllkkvlllglllfvlaevlelvresseesessakllkvllflipl..alldlffvvwifrsLqktlrdlklkrnlvklklYrkftvvlvis 238
                   +  L ++  ++++ ++ll++++   + +   +  s+  + l ++ l+++ l  ++++l ++   + +L +   d  +    +k +++   + ++ +s
   KOO24527.1 128 TRNDLAQNEIALCGTVVLLLYATVTIQ-LSIGGLLSAIPQLLVWFGLLVVVLsaVITNLRVLKAQLLALRSFNIDATTTPAFTKYSMFA--WLLVFAS 222
                  ***************999999984443.3445556666556666666666664344555555556666666666666666666666665..3445556 PP

  Lung_7-TM_R 239 vvasviivlvekillktvdsvekqWkeeWlitafw.elltlvllvviaylwr 289
                  +++ + i l++ +     ++ +   + +Wl +a+  ++l l+l + i+ ++r
   KOO24527.1 223 IYFGLDITLFA-L-----AAANVGGQ-AWLWHALCrQILELALTISIGWIFR 267
                  66666666666.3.....34444444.6667777778888888888888876 PP

>> GpcrRhopsn4  Rhodopsin-like GPCR transmembrane domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.7   6.6   9.9e-08   0.00089      36     153 ..      42     154 ..      24     183 .. 0.73

  Alignments for each domain:
  == domain 1  score: 18.7 bits;  conditional E-value: 9.9e-08
  GpcrRhopsn4  36 vllyivlliinivvikalkkreekhtvlkllsvslllelislllllihlivYaynGigiellqilgeildilsqilfllLLlllakGWtitraklssl 133
                   l+++v     i+++ ++ + e+ h+   + ++s + +l+s++ + ++ +   y     +l++++  +l il + +f++ Ll++akGW itr +l + 
   KOO24527.1  42 WLVFLVWWSHDIYFVHRQHAHELHHMLWCIPALSAVFSLLSICYYEMCPWDLGY----QQLVSAAWVVLVILREPVFVVCLLMVAKGWRITRNDLAQ- 134
                  345555555556555666555555655566667777777777777777766655....467899999****************************84. PP

  GpcrRhopsn4 134 stvillvlivlivvlqvilv 153
                  + + l + +vl+  + v++ 
   KOO24527.1 135 NEIALCGTVVLLLYATVTIQ 154
                  88888888888877777765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (396 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       872  (0.0486363); expected 358.6 (0.02)
Passed bias filter:                      366  (0.0204139); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.46u 0.22s 00:00:00.68 Elapsed: 00:00:00.36
# Mc/sec: 3316.91
//
Query:       KOO24528.1  [L=166]
Description: autophagy-related protein 8 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      7e-42  141.8   0.2    1.1e-39  134.7   0.1    2.1  2  Atg8      Autophagy protein Atg8 ubiquitin like
    3.5e-06   27.3   0.0    5.5e-06   26.7   0.0    1.3  1  APG12     Ubiquitin-like autophagy protein Apg12


Domain annotation for each model (and alignments):
>> Atg8  Autophagy protein Atg8 ubiquitin like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  134.7   0.1   1.3e-43   1.1e-39       1      94 [.      16     109 ..      16     116 .. 0.97
   2 !    5.4   0.0    0.0023        21      93     104 .]     144     155 ..     131     155 .. 0.88

  Alignments for each domain:
  == domain 1  score: 134.7 bits;  conditional E-value: 1.3e-43
                 HHHHHHHHHHHHSTTEEEEEEEE-TTSSS---S-SEEEEETTSBHHHHHHHHHHHTT--TTS-EEEEETTE-SSTTSBHHHHHHHH--TTSSEE CS
        Atg8   1 krkkesekirekypdriPvivekaekeklpeldkkkylvPedltvgqlvliirkrlqlepekalfllvnetlpstsatmsalyeeekdedgfly 94 
                 kr++e+++irekypdriPvi+ek  ++++p +dk+kyl+P dltvgq+v++irkr+ + ++ka+f++vn++lp+t+a ms++ye++kd+dgf+ 
  KOO24528.1  16 KRVAEAARIREKYPDRIPVICEKDVGSDIPAVDKRKYLIPMDLTVGQFVYVIRKRISIPSDKAIFIFVNNSLPPTAALMSTVYEQHKDQDGFMC 109
                 799*****************************************************************************************74 PP

  == domain 2  score: 5.4 bits;  conditional E-value: 0.0023
                 EEEEEESSSTB- CS
        Atg8  93 lyvvyssentfG 104
                  y++ys+entfG
  KOO24528.1 144 RYMMYSGENTFG 155
                 5**********9 PP

>> APG12  Ubiquitin-like autophagy protein Apg12
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.7   0.0   6.2e-10   5.5e-06      10      74 ..      42     105 ..      34     113 .. 0.88

  Alignments for each domain:
  == domain 1  score: 26.7 bits;  conditional E-value: 6.2e-10
                 TTS---S--EEEEETTSBHHHHHHHHHHHCT-.SSSS-EEEETTTB---TTSBHHHHHHHH-BTT CS
       APG12  10 gdvpilkkkklkvnasdtvakvilflkkeLklqaseslflYvnnsFaPsPdeeveeLyecfgtdk 74 
                 +d+p + k+k+ + +  tv +++  ++k++ ++ ++ +f++vnns  P+    + ++ye+++ ++
  KOO24528.1  42 SDIPAVDKRKYLIPMDLTVGQFVYVIRKRISIPSDKAIFIFVNNSLPPTA-ALMSTVYEQHKDQD 105
                 479*******************************************9875.67899999998554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (166 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       364  (0.0203023); expected 358.6 (0.02)
Passed bias filter:                      343  (0.019131); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.37u 0.20s 00:00:00.57 Elapsed: 00:00:00.35
# Mc/sec: 1434.44
//
Query:       KOO24529.1  [L=448]
Description: hypothetical protein Ctob_004951 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    9.1e-12   45.3   9.9       0.92   10.5   0.2    8.3  8  SHIPPO-rpt  Sperm-tail PG-rich repeat


Domain annotation for each model (and alignments):
>> SHIPPO-rpt  Sperm-tail PG-rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.9   0.0     0.003        54       2      11 ..      39      48 ..      38      75 .. 0.74
   2 !   10.5   0.2   5.1e-05      0.92       1      16 [.      91     104 ..      91     120 .. 0.74
   3 ?    0.4   0.0     0.084   1.5e+03       4      11 ..     132     139 ..     132     167 .. 0.78
   4 !    3.7   0.1    0.0076   1.4e+02       2       8 ..     180     186 ..     179     187 .. 0.91
   5 !    4.9   0.0    0.0031        55       2      15 ..     225     236 ..     224     254 .. 0.76
   6 !    4.6   0.0    0.0039        70       3      11 ..     273     281 ..     271     308 .. 0.80
   7 !    5.6   0.0    0.0019        33       2       8 ..     328     334 ..     327     366 .. 0.78
   8 !    7.9   0.0   0.00034       6.1       2      11 ..     391     400 ..     390     416 .. 0.84

  Alignments for each domain:
  == domain 1  score: 4.9 bits;  conditional E-value: 0.003
  SHIPPO-rpt  2 PGPGtYkpnk 11
                 GPG+Y+ ++
  KOO24529.1 39 VGPGSYDDKS 48
                6******887 PP

  == domain 2  score: 10.5 bits;  conditional E-value: 5.1e-05
  SHIPPO-rpt   1 lPGPGtYkpnknvpsn 16 
                 +PGPG+Y+  +  ps+
  KOO24529.1  91 TPGPGAYEARS--PSQ 104
                 7*******999..555 PP

  == domain 3  score: 0.4 bits;  conditional E-value: 0.084
  SHIPPO-rpt   4 PGtYkpnk 11 
                 PG+Y+   
  KOO24529.1 132 PGAYDLSR 139
                 9***9765 PP

  == domain 4  score: 3.7 bits;  conditional E-value: 0.0076
  SHIPPO-rpt   2 PGPGtYk 8  
                 P PGtY+
  KOO24529.1 180 PAPGTYN 186
                 9*****8 PP

  == domain 5  score: 4.9 bits;  conditional E-value: 0.0031
  SHIPPO-rpt   2 PGPGtYkpnknvps 15 
                 PG G+Y+pn+  +s
  KOO24529.1 225 PGVGAYDPNM--TS 236
                 566******9..44 PP

  == domain 6  score: 4.6 bits;  conditional E-value: 0.0039
  SHIPPO-rpt   3 GPGtYkpnk 11 
                 GPG+Y+ + 
  KOO24529.1 273 GPGSYDAEV 281
                 9*****988 PP

  == domain 7  score: 5.6 bits;  conditional E-value: 0.0019
  SHIPPO-rpt   2 PGPGtYk 8  
                 PGPG+Y 
  KOO24529.1 328 PGPGAYF 334
                 ******6 PP

  == domain 8  score: 7.9 bits;  conditional E-value: 0.00034
  SHIPPO-rpt   2 PGPGtYkpnk 11 
                  GPG+Y+p+ 
  KOO24529.1 391 VGPGSYDPER 400
                 6*******97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (448 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       185  (0.0103185); expected 358.6 (0.02)
Passed bias filter:                      153  (0.00853366); expected 358.6 (0.02)
Passed Vit filter:                        12  (0.000669307); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.24s 00:00:00.70 Elapsed: 00:00:00.42
# Mc/sec: 3202.59
//
Query:       KOO24530.1  [L=130]
Description: sec14 cytosolic factor [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.4e-19   68.2   0.0    6.9e-19   68.1   0.0    1.0  1  CRAL_TRIO  CRAL/TRIO domain


Domain annotation for each model (and alignments):
>> CRAL_TRIO  CRAL/TRIO domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   68.1   0.0   3.8e-23   6.9e-19      58     159 .]      10     111 ..       1     111 [. 0.92

  Alignments for each domain:
  == domain 1  score: 68.1 bits;  conditional E-value: 3.8e-23
   CRAL_TRIO  58 gqvegvtvviDlkglslskmlwkp.isllkkilkilqdnyperlgkilivnaPklfkfafklvkpfldektreKikfvspsnteatlekyidpeqlpke 155
                 ++v+++++v D++g s   + +++ + llk + k +++++pe++ kili+naP++f+++f++vk+f+d+ t+ K+ ++ +  t   l   +d + lp+e
  KOO24530.1  10 RPVTKYVFVGDFQGGSGVVFHMSTvVPLLKMLTKSVEAHFPEIVDKILIFNAPRIFATMFQIVKAFMDPITAAKVEVYAGVPT-GRLLALMDSSTLPVE 107
                 68999***********777777788*****************************************************99888.7************** PP

   CRAL_TRIO 156 lGGt 159
                 +GGt
  KOO24530.1 108 YGGT 111
                 ***7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (130 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       392  (0.021864); expected 358.6 (0.02)
Passed bias filter:                      358  (0.0199677); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.25s 00:00:00.61 Elapsed: 00:00:00.38
# Mc/sec: 1013.66
//
Query:       KOO24531.1  [L=335]
Description: hypothetical protein Ctob_004953 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.1e-07   31.0   2.8      9e-06   25.0   0.1    2.9  3  EF-hand_5        EF hand
    1.5e-07   30.8   0.2    7.6e-05   22.3   0.0    2.7  3  EF-hand_6        EF-hand domain
    8.3e-06   26.2   0.2      4e-05   24.0   0.2    2.1  1  EF-hand_7        EF-hand domain pair
    1.1e-05   24.7   0.0     0.0003   20.1   0.0    2.3  2  EF-hand_1        EF hand
     0.0021   17.9   0.1       0.22   11.4   0.0    2.8  3  EF-hand_8        EF-hand domain pair
  ------ inclusion threshold ------
      0.064   13.8   0.3       0.13   12.9   0.3    1.5  1  Pur_ac_phosph_N  Purple acid Phosphatase, N-terminal domain
       0.13   12.6   0.1       0.68   10.3   0.1    2.1  1  SPARC_Ca_bdg     Secreted protein acidic and rich in cysteine


Domain annotation for each model (and alignments):
>> EF-hand_5  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.1       1.1   2.7e+03      17      23 ..      97     103 ..      97     105 .. 0.84
   2 !    5.3   0.0    0.0058        15      12      21 ..     280     289 ..     274     292 .. 0.80
   3 !   25.0   0.1   3.5e-09     9e-06       2      23 ..     303     324 ..     302     327 .. 0.92

  Alignments for each domain:
  == domain 1  score: -1.9 bits;  conditional E-value: 1.1
                 -HHHHHH CS
   EF-hand_5  17 skeELkt 23 
                 s+eEL++
  KOO24531.1  97 SAEELQA 103
                 89***96 PP

  == domain 2  score: 5.3 bits;  conditional E-value: 0.0058
                 -SSCE-HHHH CS
   EF-hand_5  12 gDGkIskeEL 21 
                  DGk+sk+E 
  KOO24531.1 280 ADGKVSKSEY 289
                 5********6 PP

  == domain 3  score: 25.0 bits;  conditional E-value: 3.5e-09
                 HHHHHHH-SS-SSCE-HHHHHH CS
   EF-hand_5   2 kdtFqaiDlNgDGkIskeELkt 23 
                 k++F+++D+N+DG +s++E+k+
  KOO24531.1 303 KAAFDQLDANKDGLLSADEFKA 324
                 578*****************96 PP

>> EF-hand_6  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   0.0       5.2   1.3e+04       5      14 ..     221     230 ..     220     230 .. 0.81
   2 !    5.9   0.0    0.0054        14       3      21 ..     270     288 ..     268     291 .. 0.89
   3 !   22.3   0.0     3e-08   7.6e-05       2      28 ..     302     329 ..     301     335 .] 0.88

  Alignments for each domain:
  == domain 1  score: -3.4 bits;  conditional E-value: 5.2
   EF-hand_6   5 aFklfDkdgd 14 
                 +F+++ ++g+
  KOO24531.1 221 FFDAIATNGT 230
                 8999999985 PP

  == domain 2  score: 5.9 bits;  conditional E-value: 0.0054
   EF-hand_6   3 reaFklfDkdgdGkidaeE 21 
                 ++a+ ++D+  dGk++++E
  KOO24531.1 270 NRAYSQMDTFADGKVSKSE 288
                 78999************99 PP

  == domain 3  score: 22.3 bits;  conditional E-value: 3e-08
   EF-hand_6   2 lreaFklfDkdgdGkidaeElrk.alrk 28 
                  ++aF+++D ++dG ++a+E+++ alrk
  KOO24531.1 302 AKAAFDQLDANKDGLLSADEFKAgALRK 329
                 579******************9988885 PP

>> EF-hand_7  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.0   0.2   1.6e-08     4e-05       2      68 ..     267     324 ..     266     327 .. 0.85

  Alignments for each domain:
  == domain 1  score: 24.0 bits;  conditional E-value: 1.6e-08
   EF-hand_7   2 eklkeaFkelDtdgdgyldkeellrllrkifqgagegsklsdeelellfkefDtdkdGvisfdEFlk 68 
                 ++  +a+ ++Dt  dg+++k+e   +l+      + + k+++   ++ f+ +D +kdG +s dEF++
  KOO24531.1 267 DQANRAYSQMDTFADGKVSKSE---YLE------SAKGKTDRYRAKAAFDQLDANKDGLLSADEFKA 324
                 5778999***************...445......344444899999*******************86 PP

>> EF-hand_1  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.1   0.0     0.068   1.7e+02      13      24 ..     280     291 ..     269     295 .. 0.79
   2 !   20.1   0.0   1.2e-07    0.0003       3      24 ..     303     324 ..     301     328 .. 0.92

  Alignments for each domain:
  == domain 1  score: 2.1 bits;  conditional E-value: 0.068
                 SSSEEEHHHHHH CS
   EF-hand_1  13 gdGkIdfeEfke 24 
                  dGk++++E++e
  KOO24531.1 280 ADGKVSKSEYLE 291
                 59*******875 PP

  == domain 2  score: 20.1 bits;  conditional E-value: 1.2e-07
                 HHHHHHHTTTSSSEEEHHHHHH CS
   EF-hand_1   3 keiFrefDkDgdGkIdfeEfke 24 
                 k +F+ +D ++dG ++ +Efk+
  KOO24531.1 303 KAAFDQLDANKDGLLSADEFKA 324
                 89******************97 PP

>> EF-hand_8  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.0       1.4   3.6e+03      24      37 ..      97     110 ..      95     111 .. 0.88
   2 ?    3.0   0.0     0.035        90      34      50 ..     275     291 ..     272     294 .. 0.87
   3 !   11.4   0.0   8.4e-05      0.22      31      51 ..     305     325 ..     296     329 .. 0.87

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 1.4
   EF-hand_8  24 seeevdilfrefDt 37 
                 s+ee+++ ++ +D+
  KOO24531.1  97 SAEELQAELDVVDQ 110
                 78999999999996 PP

  == domain 2  score: 3.0 bits;  conditional E-value: 0.035
   EF-hand_8  34 efDtdgdGkisfeEFcv 50 
                  +Dt  dGk+s+ E+++
  KOO24531.1 275 QMDTFADGKVSKSEYLE 291
                 699999********976 PP

  == domain 3  score: 11.4 bits;  conditional E-value: 8.4e-05
   EF-hand_8  31 lfrefDtdgdGkisfeEFcvl 51 
                  f+ +D ++dG +s +EF + 
  KOO24531.1 305 AFDQLDANKDGLLSADEFKAG 325
                 69****************875 PP

>> Pur_ac_phosph_N  Purple acid Phosphatase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.3   4.9e-05      0.13       9      73 ..     238     313 ..     231     314 .. 0.78

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 4.9e-05
  Pur_ac_phosph_N   9 tedtstsmtvsWitpektkksvvrygtssda.......lestaeatsstyet....tnyksgyshkatltgLepgt 73 
                       +++++s+ v W+  ++t+++++ ++ ++d+        ++ a+++ s+ e+    + ++++y  ka +++L++++
       KOO24531.1 238 PASPPSSVKVHWYGASATARETIAVAANDDQanraysqMDTFADGKVSKSEYlesaKGKTDRYRAKAAFDQLDANK 313
                      45699********************999998555554434445555555555999888899999999999999875 PP

>> SPARC_Ca_bdg  Secreted protein acidic and rich in cysteine Ca binding region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.1   0.00026      0.68      36      77 ..     282     323 ..     255     330 .. 0.64

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.00026
  SPARC_Ca_bdg  36 hleelekkeeeknlkeckepvawkFsklDtnsdkvlsksELa 77 
                    + ++++  e+ + k+ ++ ++  F++lD n+d++ls  E +
    KOO24531.1 282 GKVSKSEYLESAKGKTDRYRAKAAFDQLDANKDGLLSADEFK 323
                   334444445555555666666777888888888888877765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (335 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       984  (0.0548832); expected 358.6 (0.02)
Passed bias filter:                      501  (0.0279436); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.48u 0.24s 00:00:00.72 Elapsed: 00:00:00.39
# Mc/sec: 2567.61
//
Query:       KOO24532.1  [L=462]
Description: threonine synthase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      2e-19   70.1   1.2    5.5e-19   68.7   1.2    1.6  1  PALP      Pyridoxal-phosphate dependent enzyme


Domain annotation for each model (and alignments):
>> PALP  Pyridoxal-phosphate dependent enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   68.7   1.2   3.1e-23   5.5e-19      31     293 ..      68     378 ..      57     379 .. 0.80

  Alignments for each domain:
  == domain 1  score: 68.7 bits;  conditional E-value: 3.1e-23
                 GSTTSBTTHHHHHHHHHHHHTT.....TTTSEEEEEBSSHHHHHHHHHHHHHT-.EEEEE....EETTS-HHHHHHHHHTT-.EEEEE..CCHHHHHHH CS
        PALP  31 lnptgSfKdRgaeyllarlkeg.....tgaktvveassGNhgralAaaaallGl.kvtiv....vpadaspekvallrllGa.evvev..ggdydeava 116
                   pt +fKd g + ++a+l ++      ++ t+++ +sG++g a++ a +  G+  v+i+    + + +  + ++++      +v+++  +gd+de ++
  KOO24532.1  68 AGPTLAFKDIGQQ-VVAQLLNHvlgsrGERATIIVETSGDTGPAAIEAVR--GCsAVRIFclypMGRVSHVQELQMITVD-SpNVHVYrtEGDTDEQAE 162
                 469********99.555544444556679*******************99..6657777766544444433444444333.245555555********* PP

                 HHHHHHHHSTTCEE--TTT..SHHHHHH.HHTHHHHHHHHTTTTEEE.....EEEE-SSSHHHHHHHHHHHHHSTT-EEEEEEECTTCGGTTCCS..S. CS
        PALP 117 aaaelaaegegaylvsqfd..nptvieg.ygtiglEileqlggkpda.....vvvpvGgGgliaGiaaglkerrpdvrvigvepegsdalarslragrr 207
                 a + +  +  ++   +     n+ +++    + g+ +++ l+ +pda     +vvp+G  g++aG   + + + p  r++ + ++ +d ++r++++g+ 
  KOO24532.1 163 ALKVVFTD-AEFMRRHKVCsiNSINWARvLVQSGYYLWACLQVAPDArmrvnFVVPTGAFGNAAGGLLAKRLGAPIERIVCA-TNANDIVHRTIQTGDL 259
                 99977777.666666666667888999999********99998899888888********************9997777766.666********88776 PP

                 SS..B...............................SSS.CCSTCSCGTTCCHHHHSEEEE..EEEEEEHHHHHHHHHHHHHHHSB-B-HHHHHHHHHH CS
        PALP 208 vtvpvs..............................dtiadglavgspselafelldrlvd..eivtvsdeealeamrllarregivvepssaaalaal 274
                 +  +                                + i++ l+  ++  l  +lld         +v+d+++l+amr+++r++g+ ++p+sa+++ al
  KOO24532.1 260 SFGTNRqtispamdiqfaynlerllylcsagdrsldKAIMTELESTRAVQLPRPLLDTIQQtfLSCAVDDAQTLQAMREVYRAHGYALDPHSAIGVYAL 358
                 5555557778889*******************99999999999999666666666655555444789******************************** PP

                 ..HHHHHHCCTTCEEEEEEE- CS
        PALP 275 ..klreagelkegdrvvvilt 293
                     + +++++++ ++v++lt
  KOO24532.1 359 dhVHAVKEACRAN-PTVCVLT 378
                 9888899999999.9999998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (462 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       368  (0.0205254); expected 358.6 (0.02)
Passed bias filter:                      332  (0.0185175); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.25s 00:00:00.73 Elapsed: 00:00:00.40
# Mc/sec: 3462.58
//
Query:       KOO24533.1  [L=1353]
Description: ATP-binding cassette superfamily [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    6.5e-42  143.3   0.0    1.5e-24   87.1   0.0    2.3  2  ABC_tran       ABC transporter
    6.1e-31  107.5  58.4    2.5e-17   63.0  25.6    2.3  2  ABC2_membrane  ABC-2 type transporter
    1.8e-11   44.4   0.4     0.0011   18.8   0.0    3.2  3  AAA_21         AAA domain, putative AbiEii toxin, Type IV TA 
    0.00052   20.2   0.9        0.8   10.0   0.0    3.4  3  SbcCD_C        Putative exonuclease SbcCD, C subunit
    0.00071   19.5   0.1     0.0017   18.2   0.1    1.6  1  RsgA_GTPase    RsgA GTPase
     0.0008   19.8   0.0     0.0023   18.3   0.0    1.8  1  AAA_16         AAA ATPase domain
     0.0069   16.7   0.0      0.022   15.0   0.0    1.8  1  AAA_22         AAA domain
     0.0076   15.7   0.0       0.36   10.2   0.0    2.7  2  SMC_N          RecF/RecN/SMC N terminal domain
  ------ inclusion threshold ------
       0.02   14.5   0.0      0.037   13.6   0.0    1.4  1  cobW           CobW/HypB/UreG, nucleotide-binding domain
      0.029   14.9   0.1       0.05   14.1   0.1    1.2  1  AAA_23         AAA domain
      0.065   13.0   1.2       0.11   12.2   0.2    1.9  2  AAA_29         P-loop containing region of AAA domain
       0.12   12.1   0.1        0.3   10.8   0.1    1.6  1  AAA_30         AAA domain
       0.14   11.9   0.0        9.9    5.8   0.0    2.3  2  Pilus_CpaD     Pilus biogenesis CpaD protein (pilus_cpaD)
        0.2   11.6   0.0       0.44   10.4   0.0    1.5  1  Rad17          Rad17 P-loop domain
       0.37   10.7   2.8        0.2   11.5   0.1    1.9  2  NACHT          NACHT domain


Domain annotation for each model (and alignments):
>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   87.1   0.0   1.3e-27   1.5e-24       1     136 [.      45     196 ..      45     197 .. 0.93
   2 !   54.1   0.0   1.8e-17   2.2e-14       1     137 []     733     884 ..     733     884 .. 0.92

  Alignments for each domain:
  == domain 1  score: 87.1 bits;  conditional E-value: 1.3e-27
                 EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--..SEEEEEETTCEGGGB-HHHCCHCEEEE-SS--S-TTSBHHHH...............HHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...............xxx RF
    ABC_tran   1 lknvslklkegekvaivGenGaGKStLlkllagllkp..teGeilldgkdlkeqeleslrkeigvlpqepqlfpeltvren...............esd 82 
                 l++vs +++ g+++ai+G++GaGK+tLl++l+ + k     G++ ++g++++    + +r++ ++++q++ l+  lt re+               +++
  KOO24533.1  45 LSDVSASVSSGHVLAILGPSGAGKTTLLNMLTLQRKGgqPYGSVMINGTHMDG---PLYREHCAYVQQQDALWASLTTREHlsyafalcrpgvtgaARE 140
                 689*****************************999886678*********999...*************************************998888 PP

                 TCHHHHHHHSTTGGTTCBGESTTS..GGS-HHHHHHHHHHHHHHHTSSEEEEESTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  83 eeiekalsklglkelkdtvvkssp..ssLSgGqkqrvalarallkkpkllllDEpt 136
                 + i+ +l++l+lk+++++++  ++    LS G k+r+++a al k+p++l+lDEpt
  KOO24533.1 141 AGIDSLLEELSLKGKPEHTQAGNQfmGGLSSGLKRRLSIALALTKQPSILFLDEPT 196
                 88************776666555469*****************************9 PP

  == domain 2  score: 54.1 bits;  conditional E-value: 1.8e-17
                 EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--..SEEEEEETTCEGGGB-HHHCCHCEEEE-SS--S-TTSBHHHH...............HHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...............xxx RF
    ABC_tran   1 lknvslklkegekvaivGenGaGKStLlkllagllkp..teGeilldgkdlkeqeleslrkeigvlpqepqlfpeltvren...............esd 82 
                 l+ vsl++  g ++ai+G++    + Ll++l+ + +   + G ++ldg +++      + +  +++p  ++l+p +t+r++               ++ 
  KOO24533.1 733 LSGVSLEIPGGDVMAIIGPSDGDGTVLLNALSLEKTStvAYGVLELDGVPITP---ANYAHLCSYVPNAETLWPMMTARKHleyafrlmrpdltgaAMV 828
                 6789***************96556999**999887765589***********9...899999***************************9999998888 PP

                 TCHHHHHHHSTTGGTTCBGESTTS.GGS-HHHHHHHHHHHHHHHTSSEEEEESTTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  83 eeiekalsklglkelkdtvvkssp.ssLSgGqkqrvalarallkkpkllllDEpta 137
                 + ++++l   g++ +++t++++   + LSgGqk+r+++a  l+++pk+lllDEpt+
  KOO24533.1 829 KAVDELLLATGMVSCQHTKAGDALrQGLSGGQKRRLMMALGLVSRPKVLLLDEPTS 884
                 88******************888789****************************96 PP

>> ABC2_membrane  ABC-2 type transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.0  25.6   2.1e-20   2.5e-17       2     210 .]     330     537 ..     329     537 .. 0.87
   2 !   50.3  24.9   1.6e-16   1.9e-13       1     205 [.    1017    1220 ..    1017    1225 .. 0.84

  Alignments for each domain:
  == domain 1  score: 63.0 bits;  conditional E-value: 2.1e-20
  ABC2_membrane   2 qikallkreflqrwrdpslgllwrliqplllalvfgtvfgnlg.nsedgl.nrpgllffsvlflafsaltsvapvferergvl.erelvsplysls 94 
                    q++ l+ r++l++ rdp+l+ + r+i  l+++++f  ++ ++    +d + +r  ++ f++++     +  va++ e+   +   re   +l+++ 
     KOO24533.1 330 QVMSLTSRQLLLARRDPMLY-VGRIIANLFVTTFFSILYLSTReRVQDQVqTRCFFVLFFTTMPL--QFNLVAVLAEYFYALSlRREIKDGLFTPL 422
                    899**************999.*******************9886555555244444444444444..55555566666666656************ PP

  ABC2_membrane  95 ayvlakvlvelpvsllqalifllivyflvgldlsrfflflllllltalaasslgllisalapsfedasqlaslvllpllllsGffipidsm.pkwl 189
                    +  la+++v+ p++++ a+  +++ + + +ld+ +f  ++l+  +t + + ++g +++  +  +   +++++l++ + +l++G+fi ++++   ++
     KOO24533.1 423 TASLASWIVQPPFMFVTAASAMVTPFAIGDLDWRAFPQAWLIYGVTNWSFEGYGQFFALASHPLLGLMNFMQLFFAM-FLFCGMFIDLNNLtW-VF 516
                    ****************************9****999999*********************************99876.799**********66.9* PP

  ABC2_membrane 190 qwiaylnPltyavealrsnlf 210
                    +w+a++ Pl y+++++++++f
     KOO24533.1 517 RWMAHAMPLQYTISLMVHTIF 537
                    ***************999876 PP

  == domain 2  score: 50.3 bits;  conditional E-value: 1.6e-16
  ABC2_membrane    1 tqikallkreflqrwrdpslgllwrliqplllalvfgtvfgnlgnsedgl.nrpgllffsvlflafsaltsva..pvferergvlerelvsply 91  
                     tqi +l++r+f  ++ dp+++ l+r++   +++++fg v+    n+ +++ ++   lff+   l++  +  ++  +++ +e  +   e+ ++ y
     KOO24533.1 1017 TQIVVLTQRTFEMAFADPVIY-LVRMFVVAFIITFFGIVYLESANQVQEQiSF--RLFFLWWLLCVPPALDIVavFYYNIELQTARAEMKTGAY 1107
                     69****************888.99*****************654444444333..333333333333444433006667888999********* PP

  ABC2_membrane   92 slsayvlakvlvelpvsllqalifllivyflvgldlsrfflflllllltalaasslgllisalapsfedasqlaslvllpllllsGffipidsm 185 
                      ++ayv+a+++v+lp+++++al   +  y l g+++++f+ f+++  l+++a+ +lg + + l   +  + q++++  + l++++ +f   d +
     KOO24533.1 1108 GTFAYVVANTAVQLPMMFALALCACIPGYGLGGFPWDNFVTFWIAYALSLWAFECLGQACALLRNPIIGILQFMNVWASALIFTGLVFRGEDVI 1201
                     *********************************************************************************9999999999999 PP

  ABC2_membrane  186 .pkwlqwiaylnPltyaveal 205 
                      p + + + +l Pl++++++ 
     KOO24533.1 1202 wP-F-RILIWLFPLRWLFNSA 1220
                     66.5.5577*********986 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.8   0.1    0.0044       5.3       3      21 ..      59      77 ..      57      91 .. 0.84
   2 !   18.8   0.0   9.2e-07    0.0011     234     295 ..     166     225 ..     145     230 .. 0.82
   3 !   15.1   0.0   1.3e-05     0.015     236     294 ..     855     911 ..     806     916 .. 0.80

  Alignments for each domain:
  == domain 1  score: 6.8 bits;  conditional E-value: 0.0044
      AAA_21  3 vliGpNgsGKSnLLdaldl 21
                ++ Gp g+GK++LL  l l
  KOO24533.1 59 AILGPSGAGKTTLLNMLTL 77
                799***********88865 PP

  == domain 2  score: 18.8 bits;  conditional E-value: 9.2e-07
      AAA_21 234 arelSdGtkrllalltallralkkgsllliDEpEngLHPkllrrllellkelsr.ngaQvilt 295
                 +  lS+G kr l +++al  ++   s+l++DEp +g + +  ++++++lk+ ++ +++ + +t
  KOO24533.1 166 MGGLSSGLKRRLSIALALTKQP---SILFLDEPTTGVDSASAAKIMGFLKQIAAeKNVAIACT 225
                 5679******978777777777...************************77665466655555 PP

  == domain 3  score: 15.1 bits;  conditional E-value: 1.3e-05
      AAA_21 236 elSdGtkrllalltallralkkgsllliDEpEngLHPkllrrllellkelsr.ngaQvil 294
                  lS G+kr l +++ l +++   ++ll+DEp +gL+ ++ + + +llk+ +  ng+ +++
  KOO24533.1 855 GLSGGQKRRLMMALGLVSRP---KVLLLDEPTSGLDSAAAAAITRLLKDIALkNGTSILC 911
                 68999999988888888888...9***********************6554435555555 PP

>> SbcCD_C  Putative exonuclease SbcCD, C subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.0   0.0   0.00067       0.8      61      89 ..     184     212 ..     166     213 .. 0.85
   2 !    6.7   0.1    0.0071       8.4      62      89 ..     872     899 ..     842     900 .. 0.79
   3 ?   -3.1   0.1       8.4     1e+04      42      69 ..    1045    1073 ..    1043    1073 .. 0.83

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.00067
     SbcCD_C  61 epalrlvfLDEAFsklDeesiatllelle 89 
                 +++++++fLDE   ++D+ s+a+++++l+
  KOO24533.1 184 TKQPSILFLDEPTTGVDSASAAKIMGFLK 212
                 56899*********************998 PP

  == domain 2  score: 6.7 bits;  conditional E-value: 0.0071
     SbcCD_C  62 palrlvfLDEAFsklDeesiatllelle 89 
                 +++++++LDE  s+lD+  +a++ +ll+
  KOO24533.1 872 SRPKVLLLDEPTSGLDSAAAAAITRLLK 899
                 56899***************99999986 PP

  == domain 3  score: -3.1 bits;  conditional E-value: 8.4
     SbcCD_C   42 aylalaaalaalyssaeg.repalrlvfL 69  
                  a ++ ++++++l s ++  ++ ++rl+fL
  KOO24533.1 1045 AFIITFFGIVYLESANQVqEQISFRLFFL 1073
                  56788999999999998459999999998 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.2   0.1   1.5e-06    0.0017      85     121 ..      40      77 ..      29      89 .. 0.82

  Alignments for each domain:
  == domain 1  score: 18.2 bits;  conditional E-value: 1.5e-06
                  TTHTTHHHHHHHCTT.SEEEEECSTTSSHHHHHHHHCT CS
  RsgA_GTPase  85 ktkegleelkellkd.ktsvlvGqSGvGKStLinallp 121
                  k+k  l+++++ +++ ++ +++G+SG+GK+tL+n+l+ 
   KOO24533.1  40 KDKVLLSDVSASVSSgHVLAILGPSGAGKTTLLNMLTL 77 
                  55556677777777669******************975 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.3   0.0   1.9e-06    0.0023      19     143 ..      52     194 ..      42     222 .. 0.53

  Alignments for each domain:
  == domain 1  score: 18.3 bits;  conditional E-value: 1.9e-06
      AAA_16  19 vrsgrpelvllsGesGvGKsslvrellralekd.....ggiflrgkcdql...esaipy....sa.laqalareellrqllde...aesaeleawrekl 101
                 v+sg  +++ + G+sG GK++l+++l   l+++     g + ++g+  +    ++  +y    +a +a++ +re+l  + +      + a++ea  + l
  KOO24533.1  52 VSSG--HVLAILGPSGAGKTTLLNMLT--LQRKggqpyGSVMINGTHMDGplyREHCAYvqqqDAlWASLTTREHLSYAFALCrpgVTGAAREAGIDSL 146
                 3333..899**************9999..5555567863444555555553333333335554554666666666555554443342222333333333 PP

      AAA_16 102 eeala.........avpelagaea........srllellkrllallsrderplvlvlDd 143
                 +e+l+         a                 s l + l+ +lal+   ++p +l+lD+
  KOO24533.1 147 LEELSlkgkpehtqA--------GnqfmgglsSGLKRRLSIALALT---KQPSILFLDE 194
                 333334333322233........13445222144444444444333...4578999996 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.0   1.8e-05     0.022       5      29 ..      55      79 ..      51     108 .. 0.88

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 1.8e-05
      AAA_22  5 agilvvtGesGtGKTtllrrlleql 29
                  +l++ G+sG+GKTtll++l+ q 
  KOO24533.1 55 GHVLAILGPSGAGKTTLLNMLTLQR 79
                56899****************9997 PP

>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.9   0.0       0.1   1.2e+02      25      42 ..      56      73 ..      42      79 .. 0.83
   2 !   10.2   0.0    0.0003      0.36     135     199 ..     610     915 ..     136     933 .. 0.63

  Alignments for each domain:
  == domain 1  score: 1.9 bits;  conditional E-value: 0.1
                SEEEEEESTTSSHHHHHH CS
                xxxxxxxxxxxxxxxxxx RF
       SMC_N 25 sftaivGpNGSGKsnlld 42
                ++ ai+Gp G+GK+ ll+
  KOO24533.1 56 HVLAILGPSGAGKTTLLN 73
                5779**********9987 PP

  == domain 2  score: 10.2 bits;  conditional E-value: 0.0003
                 T.................................................................................................. CS
                 x.................................................................................................. RF
       SMC_N 135 e.................................................................................................. 135
                 e                                                                                                  
  KOO24533.1 610 Eenvtkglliigaggvlfrilylvqmyaqtsnvqapvpplqvlpgstpvepskssskhiavsskklsdpdleltqelnveaemlpaapgaqgatsvlvv 708
                 055555555555555555555555555555555555555555555555555555555555555555555555555566666666666666666666666 PP

                 ................................................................................................... CS
                 ................................................................................................... RF
       SMC_N 136 ................................................................................................... 135
                                                                                                                    
  KOO24533.1 709 kglecispapagvpcmpkkenkkvlsgvsleipggdvmaiigpsdgdgtvllnalslektstvaygvleldgvpitpanyahlcsyvpnaetlwpmmta 807
                 666666666666666666666666666666666666666666666666666666666666666666666777777777777777777777777777777 PP

                 ...............................................CS-HHHHHHHHHHHHHHHHCCS--SEEEECTTTTTS-HHHHHHHHHHHHH.H CS
                 ...............................................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.x RF
       SMC_N 136 ...............................................lLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvkkvaellke.k 186
                                                                 LSgG+k  +++aL      v++  + llDe  + LD +  +++ +llk  +
  KOO24533.1 808 rkhleyafrlmrpdltgaamvkavdelllatgmvscqhtkagdalrqGLSGGQKRRLMMALG----LVSRPKVLLLDEPTSGLDSAAAAAITRLLKDiA 902
                 777777777777777777777777777777777777777777777778******98777776....455566789********************9513 PP

                 CTTSEEEEE-SSH CS
                 xxxxxxxxxxxxx RF
       SMC_N 187 sknaQfivislre 199
                  kn   i  ++++
  KOO24533.1 903 LKNGTSILCTIQQ 915
                 4555555556555 PP

>> cobW  CobW/HypB/UreG, nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.0   3.1e-05     0.037       2      27 ..      57      82 ..      56     110 .. 0.75

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 3.1e-05
                EEEEEESTTCCHHHHHHHHHCT--SS CS
        cobW  2 vtvltGflGsGKTtLlnhllenragl 27
                v+ + G+ G+GKTtLln l+ +r+g 
  KOO24533.1 57 VLAILGPSGAGKTTLLNMLTLQRKGG 82
                67899**************9555443 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   0.1   4.2e-05      0.05      21      41 ..      57      77 ..      46      82 .. 0.89

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 4.2e-05
      AAA_23 21 ltlItGpNGaGKTTildAikl 41
                + +I Gp GaGKTT+l+ ++l
  KOO24533.1 57 VLAILGPSGAGKTTLLNMLTL 77
                678**************9985 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.2   9.5e-05      0.11      17      39 ..      50      72 ..      43      77 .. 0.78
   2 ?   -3.5   0.0       7.9   9.4e+03      15      32 ..     736     753 ..     731     763 .. 0.71

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 9.5e-05
      AAA_29 17 ieidlkg.atlltGpsGsGKSTll 39
                ++++ +g +  + GpsG+GK+Tll
  KOO24533.1 50 ASVS-SGhVLAILGPSGAGKTTLL 72
                5565.455999************9 PP

  == domain 2  score: -3.5 bits;  conditional E-value: 7.9
      AAA_29  15 htieidlkg.atlltGpsG 32 
                  ++ei   g ++ ++Gps 
  KOO24533.1 736 VSLEIP-GGdVMAIIGPSD 753
                 566776.445999***985 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.1   0.00025       0.3      12      39 ..      50      76 ..      46      86 .. 0.84

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00025
      AAA_30 12 alltsgdrvavltGpAGtGKttalkalr 39
                a ++sg+ v ++ Gp G+GKtt+l+ l+
  KOO24533.1 50 ASVSSGH-VLAILGPSGAGKTTLLNMLT 76
                4567776.999*************9875 PP

>> Pilus_CpaD  Pilus biogenesis CpaD protein (pilus_cpaD)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.5   0.0     0.043        51      28      82 ..     174     228 ..     158     235 .. 0.86
   2 ?    5.8   0.0    0.0083       9.9       3      86 ..     835     919 ..     834     947 .. 0.83

  Alignments for each domain:
  == domain 1  score: 3.5 bits;  conditional E-value: 0.043
  Pilus_CpaD  28 rsrhpivveeaeasldlkvasgdggLtaaqrarlealaeeyrregagaivisvps 82 
                 + r +i+++ +++   l++++++ g+++a++a+++++++++ +e + ai+ ++++
  KOO24533.1 174 KRRLSIALALTKQPSILFLDEPTTGVDSASAAKIMGFLKQIAAEKNVAIACTIHQ 228
                 56778888889999999***************************99999887765 PP

  == domain 2  score: 5.8 bits;  conditional E-value: 0.0083
  Pilus_CpaD   3 alalllagCastaasnrettgsi.dyrsrhpivveeaeasldlkvasgdggLtaaqrarlealaeeyrregagaivisvpsgssn 86 
                 +la+ + +C++t+a +  ++g +  ++ r  +++   ++   l ++++++gL++a++a++ +l++++  +++++i  ++ + s++
  KOO24533.1 835 LLATGMVSCQHTKAGDALRQGLSgGQKRRLMMALGLVSRPKVLLLDEPTSGLDSAAAAAITRLLKDIALKNGTSILCTIQQPSAA 919
                 68889999***999887777777878888888888888888888888***********************999998777665554 PP

>> Rad17  Rad17 P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.0   0.00037      0.44      25      66 ..      34      76 ..      25     105 .. 0.76

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00037
       Rad17 25 kkkieevkewlkadvLesrkkr.iLLisGPsGCgkstvvkvLs 66
                k+ i+  ++ l +dv  s     +L i GPsG gk+t +++L+
  KOO24533.1 34 KRCIKTKDKVLLSDVSASVSSGhVLAILGPSGAGKTTLLNMLT 76
                777787788888887776644349***************9986 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.1   0.00017       0.2       2      31 ..      57      86 ..      56      90 .. 0.87
   2 ?   -2.7   0.4       4.1   4.9e+03      14      51 ..     360     397 ..     360     408 .. 0.78

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.00017
                CEEEEC-TTTCHHHHHHHHHHHHCTS-SCC CS
       NACHT  2 lvilqGeaGsGKTtLlqklalawaegklpq 31
                ++++ G++G GKTtLl  l l+ + g++++
  KOO24533.1 57 VLAILGPSGAGKTTLLNMLTLQRKGGQPYG 86
                789***************999988888776 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 4.1
                 HHHHHHHHHHHCTS-SCCCC-SEEEEEETTTTTTS-.. CS
       NACHT  14 TtLlqklalawaegklpqgafklvFflslrelsrsgna 51 
                 Tt+   l l  +e+ ++q++ + +F+l++ +++ + n 
  KOO24533.1 360 TTFFSILYLSTRERVQDQVQTRCFFVLFFTTMPLQFNL 397
                 67777777788889999999999999999999887665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1353 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       808  (0.0450667); expected 358.6 (0.02)
Passed bias filter:                      508  (0.028334); expected 358.6 (0.02)
Passed Vit filter:                        88  (0.00490825); expected 17.9 (0.001)
Passed Fwd filter:                        15  (0.000836633); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              15  [number of targets reported over threshold]
# CPU time: 0.95u 0.29s 00:00:01.24 Elapsed: 00:00:00.46
# Mc/sec: 8932.72
//
Query:       KOO24534.1  [L=477]
Description: signal recognition particle 54 kda protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.8e-65  220.2   0.8    6.2e-64  215.3   0.8    2.6  1  SRP54            SRP54-type protein, GTPase domain
    2.1e-26   92.4   0.6    2.1e-26   92.4   0.6    3.5  2  SRP_SPB          Signal peptide binding domain
    9.4e-15   54.6   2.6    9.4e-15   54.6   2.6    2.0  1  SRP54_N          SRP54-type protein, helical bundle domain
    6.9e-07   29.5   0.1      7e-06   26.3   0.0    2.3  2  AAA_33           AAA domain
    3.1e-05   23.3   0.0    7.2e-05   22.1   0.0    1.6  1  Zeta_toxin       Zeta toxin
    0.00092   19.6   0.0     0.0023   18.3   0.0    1.6  1  AAA_16           AAA ATPase domain
     0.0015   18.8   0.1       0.01   16.1   0.0    2.3  2  AAA_22           AAA domain
     0.0023   17.8   0.8       0.14   12.1   0.0    3.1  3  MobB             Molybdopterin guanine dinucleotide synthesis
     0.0038   17.6   0.1     0.0038   17.6   0.1    2.7  3  AAA_17           AAA domain
     0.0064   16.2   0.2      0.054   13.2   0.0    2.3  2  AAA_30           AAA domain
  ------ inclusion threshold ------
      0.024   14.7   2.0         14    5.7   0.0    3.4  3  tRNA_lig_kinase  tRNA ligase kinase domain
      0.027   13.5   0.3       0.17   10.9   0.0    2.3  2  MeaB             Methylmalonyl Co-A mutase-associated GTPase 
      0.027   14.5   0.0       0.23   11.5   0.0    2.3  2  CbiA             CobQ/CobB/MinD/ParA nucleotide binding domai
       0.03   14.2   0.0      0.076   12.9   0.0    1.7  1  APS_kinase       Adenylylsulphate kinase
      0.039   14.5   0.0       0.15   12.6   0.0    2.1  1  AAA_18           AAA domain
       0.04   13.9   0.0      0.091   12.8   0.0    1.6  1  ResIII           Type III restriction enzyme, res subunit
      0.044   13.3   0.2       0.49    9.9   0.0    2.4  2  AAA_7            P-loop containing dynein motor region
      0.053   13.2   0.1       0.22   11.2   0.0    2.0  2  AAA_24           AAA domain
      0.094   13.0   1.3        3.1    8.1   0.1    2.5  2  TrkA_N           TrkA-N domain
       0.12   12.5   0.2       0.12   12.5   0.2    2.0  1  Fis1_TPR_C       Fis1 C-terminal tetratricopeptide repeat
       0.14   12.4   0.1       0.38   11.0   0.1    1.8  1  AAA_28           AAA domain
       0.34   10.2   2.4       0.41    9.9   0.0    2.2  3  6PF2K            6-phosphofructo-2-kinase
        3.3    8.1   6.5       0.66   10.4   0.4    3.1  4  AAA              ATPase family associated with various cellul


Domain annotation for each model (and alignments):
>> SRP54  SRP54-type protein, GTPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  215.3   0.8   7.9e-67   6.2e-64       1     196 []     101     283 ..     101     283 .. 0.98

  Alignments for each domain:
  == domain 1  score: 215.3 bits;  conditional E-value: 7.9e-67
                 SEEEEEEESTTSSHHHHHHHHHHHHHHTTS-EEEEEESTSSTTHHHHHHHHHHHTTEEEEESSTTSCHHHHHHHHHHHHHHTTSSEEEEEE--SSTTHH CS
       SRP54   1 pnvillvGlqGaGKTttlaKLaallkkegkkvllvaaDtfRaaAveQLktlaeklgvpvikkkeeadpaavakeavekakeekidvvlvDTaGrlqndk 99 
                 pnvi++vGlqG GKTtt++K a+l+k++g k++lv+aDtfRa+A++QLk++a+k+++p++++++e+dpa++a+e+v k+kee+++v++vDT+Gr+ +++
  KOO24534.1 101 PNVIMFVGLQGCGKTTTCTKYAHLYKRKGFKCALVCADTFRAGAFDQLKQNATKAKIPFYGSYTETDPAQIAAEGVAKFKEEGYEVIIVDTSGRHMQEE 199
                 69************************************************************************************************* PP

                 HHHHHHHHHHHHHSSSEEEEEEETTBHTHHHHHHHHHHHHSSCSEEEEESTTSSSSTTHHHHHHHHHTS-EEEEE-SSSTTGEEE--HHHHHHHHHT CS
       SRP54 100 elmeelkkikkvvkpdevllvldattgqeavkqakaFkeavgitgviltklDgdakgGaalsiaaelklPikfigvGekiedleefdperlvsrllg 196
                 +l+ee++++++ ++pd++++             a+aFk++v ++++i+tklDg+akgG+als++a+++ Pi  ig+Ge+ied+e f+ +++vsr+lg
  KOO24534.1 200 ALFEEMEQVAQLTSPDDIVF-------------ASAFKKKVAVGSCIITKLDGHAKGGGALSAVAATGAPITHIGTGEHIEDFEDFEVKSFVSRMLG 283
                 ****************9987.............789**********************************************************985 PP

>> SRP_SPB  Signal peptide binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.3       3.3   2.6e+03       9      46 ..     276     311 ..     268     314 .. 0.59
   2 !   92.4   0.6   2.7e-29   2.1e-26       2      99 .]     317     411 ..     316     411 .. 0.91

  Alignments for each domain:
  == domain 1  score: -0.9 bits;  conditional E-value: 3.3
                 HHHHHHHCCCCCCHHHHCCC.....H...CCCCCHHHH CS
     SRP_SPB   9 eqlqqikkmGplskllsmiPgmsaeakaeeeaekklkr 46 
                 + ++++   G+++ l++++       + e++a + +kr
  KOO24534.1 276 SFVSRMLGKGNIKGLMEKMKQAD--VDLEKQAPEMMKR 311
                 45667777788888888887522..2223344556665 PP

  == domain 2  score: 92.4 bits;  conditional E-value: 2.7e-29
                 SCTHHHHHHHHHHHCCCCCCHHHHCCC.....H...CCCCCHHHHHHHHHTTSBHHHHHSGCG-..HHHHHHHHHHTTS-HHHHHHHHHHHHHHHHHT CS
     SRP_SPB   2 ftlrdlleqlqqikkmGplskllsmiPgmsaeakaeeeaekklkrieaiidSMTkeErdspekllkesRkrRiArGsGtsvqevnellkqfeqmkkmm 99 
                 +tlrd++eq+q + kmGpl +++s +Pgm       + +  ++k++++++dSMT++E+d+++  +  sR++RiArGsG   +ev ell+qf+ m+++m
  KOO24534.1 317 WTLRDMREQFQAVLKMGPLGNIMSQFPGMAGLDF--HDSGVRIKKWMTMMDSMTEAELDETK-AMAPSRIIRIARGSGHYPHEVAELLEQFKLMQTTM 411
                 79**************************764432..33579*********************.5569***************************9987 PP

>> SRP54_N  SRP54-type protein, helical bundle domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.6   2.6   1.2e-17   9.4e-15       1      75 []       6      83 ..       6      83 .. 0.95

  Alignments for each domain:
  == domain 1  score: 54.6 bits;  conditional E-value: 1.2e-17
                HHHHHHHHHHHHCCSSCGHHHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHCTTS....S-HHHHHHHHHHHHH CS
     SRP54_N  1 LgkklnsalkklsgkskideedleealkeleeaLleaDVgvkvvkklienvkkkavgekk....lkpkqqvkkivkdeL 75
                Lg+k+ +al+k+++++++d+ +++e+l e+++aLl+aDV+v  vk l+e++kk  v  +     l+++++++++v +eL
  KOO24534.1  6 LGSKVADALRKMTRATVVDQTVMNEMLAEICKALLQADVNVAQVKALRESIKK-NVDVEAlasgLNKRKMLEQAVCNEL 83
                899************************************************88.8996669999***********9998 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.4   0.1      0.86   6.7e+02      62      98 ..      10      45 ..       5      83 .. 0.63
   2 !   26.3   0.0     9e-09     7e-06       1     104 [.     103     220 ..     103     227 .. 0.75

  Alignments for each domain:
  == domain 1  score: 0.4 bits;  conditional E-value: 0.86
      AAA_33 62 larkalsagrnvildatnlsrrerarflklarrlgvp 98
                +a+  ++  r++++d+t  ++   a+++k++ +++v+
  KOO24534.1 10 VADALRKMTRATVVDQTVMNE-MLAEICKALLQADVN 45
                566777888999999996553.334444444444433 PP

  == domain 2  score: 26.3 bits;  conditional E-value: 9e-09
      AAA_33   1 lvllvGlpGsGKstlaerl...lkklg..avllssdtlrrrlfgtdqqskt........dytrvldrlyqilnelarkalsagrnvildat....nlsr 82 
                 ++++vGl+G+GK+t  +++   +k+ g  + l+  dt+r   f + +q+ t         yt+  ++  qi +e ++k  ++g+ vi+  t    + ++
  KOO24534.1 103 VIMFVGLQGCGKTTTCTKYahlYKRKGfkCALVCADTFRAGAFDQLKQNATkakipfygSYTE--TDPAQIAAEGVAKFKEEGYEVIIVDTsgrhMQEE 199
                 89************9988644366666****************98888777677887654444..34455666777799******99999945433334 PP

      AAA_33  83 rerarflklarrlgvpvrivvv 104
                 + ++++ ++a+ l +p+ iv+ 
  KOO24534.1 200 ALFEEMEQVAQ-LTSPDDIVFA 220
                 55588888887.5559998875 PP

>> Zeta_toxin  Zeta toxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.1   0.0   9.3e-08   7.2e-05      10     108 ..      95     197 ..      87     224 .. 0.81

  Alignments for each domain:
  == domain 1  score: 22.1 bits;  conditional E-value: 9.3e-08
  Zeta_toxin  10 ypsqerPklillgGqpGAGKselaellkdele.rqgnvvrldpDdlRelhPeyeeilk....adpkkaseltqkdaselvekllqeaiengynii.veg 102
                 +p++++P +i+ +G +G+GK+++ ++ +   + ++ ++  + +D++R+    ++++ +    a+   + ++t+ d  +++++ +++  e+gy++i v++
  KOO24534.1  95 VPKKKQPNVIMFVGLQGCGKTTTCTKYAHLYKrKGFKCALVCADTFRAGA--FDQLKQnatkAKIPFYGSYTETDPAQIAAEGVAKFKEEGYEVIiVDT 191
                 4556*********************999999867779**********976..55554422224566689***********************9762676 PP

  Zeta_toxin 103 tlrspd 108
                   r+ +
  KOO24534.1 192 SGRHMQ 197
                 666655 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.3   0.0   2.9e-06    0.0023      21     131 ..      98     213 ..      94     228 .. 0.57

  Alignments for each domain:
  == domain 1  score: 18.3 bits;  conditional E-value: 2.9e-06
      AAA_16  21 sgrpelvllsGesGvGKsslvrellralekdggiflrgkcdqlesaipysalaqalareellrqlldeaesaeleawrekleeala............. 106
                 + +p++++++G +G+GK++  ++ ++ ++++g      kc            a+++ r + + ql+++a++a+ + +    e+  a             
  KOO24534.1  98 KKQPNVIMFVGLQGCGKTTTCTKYAHLYKRKG-----FKCALV--------CADTF-RAGAFDQLKQNATKAKIPFYGSYTETDPAqiaaegvakfkee 182
                 6789*********************8888885.....444444........55555.446666666664444444444433333332222222223344 PP

      AAA_16 107 ......avpelagaea........srllellkrllalls 131
                                         ++l+e++ + ++l+s
  KOO24534.1 183 gyeviiV--------DtsgrhmqeEALFEEMEQVAQLTS 213
                 4434321........011112234556666555555555 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.0         2   1.6e+03      52      81 ..      48      78 ..      17      85 .. 0.77
   2 !   16.1   0.0   1.3e-05      0.01       4      32 ..     100     128 ..      97     218 .. 0.64

  Alignments for each domain:
  == domain 1  score: -0.7 bits;  conditional E-value: 2
      AAA_22 52 sskdllrellralglelkaerlsseell.ea 81
                  k l++ + +++++e+ a++l+++ +l +a
  KOO24534.1 48 QVKALRESIKKNVDVEALASGLNKRKMLeQA 78
                4678899999999999988888888888555 PP

  == domain 2  score: 16.1 bits;  conditional E-value: 1.3e-05
      AAA_22   4 tagilvvtGesGtGKTtllrrlleqldee 32 
                 + ++++ +G  G+GKTt++ ++++ +++ 
  KOO24534.1 100 QPNVIMFVGLQGCGKTTTCTKYAHLYKRK 128
                 67899*******************99643 PP

>> MobB  Molybdopterin guanine dinucleotide synthesis protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.0       8.1   6.3e+03      16      38 ..      32      54 ..      29      62 .. 0.74
   2 !   12.1   0.0   0.00018      0.14       1      33 [.     103     135 ..     103     150 .. 0.92
   3 ?    2.5   0.0      0.16   1.2e+02      59     102 ..     186     226 ..     175     235 .. 0.67

  Alignments for each domain:
  == domain 1  score: -3.0 bits;  conditional E-value: 8.1
        MobB 16 leklipelkarglrvgtiKhahh 38
                l ++ ++l + +++v+ +K   +
  KOO24534.1 32 LAEICKALLQADVNVAQVKALRE 54
                66778888899999999987655 PP

  == domain 2  score: 12.1 bits;  conditional E-value: 0.00018
        MobB   1 vlgivgksgsGKTtLleklipelkarglrvgti 33 
                 v+ +vg +g+GKTt  +k  +  k++g++ +++
  KOO24534.1 103 VIMFVGLQGCGKTTTCTKYAHLYKRKGFKCALV 135
                 689**************************9987 PP

  == domain 3  score: 2.5 bits;  conditional E-value: 0.16
        MobB  59 evlvaskerlalikeleeaelsleellarlsevDlvlvEGfkke 102
                  ++v ++ r   ++e e+   ++e++++ +s+ D+v++  fkk+
  KOO24534.1 186 VIIVDTSGR-H-MQE-EALFEEMEQVAQLTSPDDIVFASAFKKK 226
                 333333333.3.333.2223467888888899*********986 PP

>> AAA_17  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.6   0.1   4.9e-06    0.0038       1     110 [.     107     222 ..     107     229 .. 0.72
   2 ?   -2.1   0.0       6.2   4.8e+03      54     117 ..     298     310 ..     246     322 .. 0.59
   3 ?   -2.0   0.1       5.6   4.3e+03      54      72 ..     403     421 ..     367     471 .. 0.68

  Alignments for each domain:
  == domain 1  score: 17.6 bits;  conditional E-value: 4.9e-06
                 EE-TTSSHHHHHHHHHHHH...TEEE.EEHHHHHHHHHHTT.TSHSSHHHHCTSHHHHHHHHHHHHHHHHHHHH..HSSEEEEEE-SEEEETTEEEESS CS
      AAA_17   1 lGgPGsGKgtqceklveky...gfth.lsaGdllreeakrg.glakardemrklpleekkelqkeaaekiaeea..kkkgvlvdghprikeqagfldgl 92 
                 +G+ G+GK+t c k ++ y   gf+  l   d +r+ a ++ + + ++ ++       + +  ++aae +a+ +  + + ++vd+  r  +++ +++++
  KOO24534.1 107 VGLQGCGKTTTCTKYAHLYkrkGFKCaLVCADTFRAGAFDQlKQNATKAKIPFYGSYTETDPAQIAAEGVAKFKeeGYEVIIVDTSGRHMQEEALFEEM 205
                 79**************88877788854788999999886553334445555544445555555666666665542255779******998888888999 PP

                 HHHHHHHH..SEEEEEE- CS
      AAA_17  93 pkevleelkpdaiillea 110
                 ++ v +  +pd i++ +a
  KOO24534.1 206 EQ-VAQLTSPDDIVFASA 222
                 85.899999**9999776 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 6.2
                 HHHHHHHHHHHHHHHHHSSEEEEEE-SEEEETTEEEESSHHHHHHHH..SEEEEEE--HHHHHH CS
      AAA_17  54 kkelqkeaaekiaeeakkkgvlvdghprikeqagfldglpkevleelkpdaiilleadpeeile 117
                 +                                                   + le ++ e+++
  KOO24534.1 298 D---------------------------------------------------VDLEKQAPEMMK 310
                 2...................................................223333333343 PP

  == domain 3  score: -2.0 bits;  conditional E-value: 5.6
                 HHHHHHHHHHHHHHHHHSS CS
      AAA_17  54 kkelqkeaaekiaeeakkk 72 
                 + +l+++ ++k ++++kk+
  KOO24534.1 403 QFKLMQTTMQKTMKKSKKM 421
                 4455555555555554332 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.2   0.0   6.9e-05     0.054      20      64 ..     103     150 ..      98     216 .. 0.60
   2 ?   -0.3   0.1      0.93   7.3e+02      55      82 ..     414     451 ..     396     470 .. 0.69

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 6.9e-05
      AAA_30  20 vavltGpAGtGKttalkalreaweaaggrvi.glAptgkaA..kvLae 64 
                 v + +G  G GKtt+ ++++++++++g++ + ++A t +a   ++L++
  KOO24534.1 103 VIMFVGLQGCGKTTTCTKYAHLYKRKGFKCAlVCADTFRAGafDQLKQ 150
                 77899**********************877636777766541145664 PP

  == domain 2  score: -0.3 bits;  conditional E-value: 0.93
      AAA_30  55 tgkaAkvLaeelg......ieastiakllkrlk....g 82 
                 t k +k+++++ g      ++ast+a+++++++    +
  KOO24534.1 414 TMKKSKKMGKAGGgmdlhnMDASTVAQMMHKMNpqmlQ 451
                 55666777765443333346999999999988765441 PP

>> tRNA_lig_kinase  tRNA ligase kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.7   0.2     0.018        14       2      24 ..     104     126 ..     103     142 .. 0.86
   2 ?    5.7   0.0     0.018        14      36      83 ..     165     211 ..     161     229 .. 0.82
   3 ?    0.4   0.1      0.81   6.3e+02     100     149 ..     368     421 ..     353     451 .. 0.74

  Alignments for each domain:
  == domain 1  score: 5.7 bits;  conditional E-value: 0.018
                      EEEE--TTSSHHHHHHHHHHH-T CS
  tRNA_lig_kinase   2 lvpiatiGCGkttvaltlenlfg 24 
                      ++ +   GCGktt+ +   +l+ 
       KOO24534.1 104 IMFVGLQGCGKTTTCTKYAHLYK 126
                      5667778********99999986 PP

  == domain 2  score: 5.7 bits;  conditional E-value: 0.018
                      TT-SS-HHHHHHHTTSSTT--EEEEES---SHHHHHHHHHHHHHHHHH CS
  tRNA_lig_kinase  36 gkdkkklvkealellkkdeskvvlvDrnnhqkreRkqlfeeidelkee 83 
                      ++d+ +++ e +  +k+++ +v++vD    +++e ++lfee++++ + 
       KOO24534.1 165 ETDPAQIAAEGVAKFKEEGYEVIIVDTSGRHMQE-EALFEEMEQVAQL 211
                      568899999*****************99877766.689**99998774 PP

  == domain 3  score: 0.4 bits;  conditional E-value: 0.81
                      -TT-HHHHHHHHHHHHH..-------------...-HHHHHHHHHHHHHT---- CS
  tRNA_lig_kinase 100 deddleevreltkdRvl..kRGdnhqsikves..edekkvkkimegfikrfqpv 149
                      +e +l+e ++++ +R++  +RG  h    v++  e+ k +++ m+  +k+ +++
       KOO24534.1 368 TEAELDETKAMAPSRIIriARGSGHYPHEVAEllEQFKLMQTTMQKTMKKSKKM 421
                      455677888888899863369999988777762234566677788888777765 PP

>> MeaB  Methylmalonyl Co-A mutase-associated GTPase MeaB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   0.00021      0.17      29     138 ..     101     200 ..      94     226 .. 0.72
   2 ?   -3.2   0.1       4.1   3.2e+03     207     239 ..     386     418 ..     356     427 .. 0.53

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00021
                 SEEEEEEE-TTSSHHHHHHHHHHHHHCTT--EEEEEE------------------HCCCTSTTEEEEEE-----HHHHHHHHHHHHHHHHHTT-SEEEE CS
        MeaB  29 aqvvGltGvPGaGkstlvealglelrrrGkrvavlavDPsspftGGsilGDklRleelavdegvfiRslpsrGalGGlaaktrevvllleaaGfDvvli 127
                  +v+ + G+ G Gk t+  + +  ++r+G + a++  D   +f  G+   D+l+ +  a+++ + +  + ++      a+ + e v+ +   G++v+++
  KOO24534.1 101 PNVIMFVGLQGCGKTTTCTKYAHLYKRKGFKCALVCAD---TFRAGAF--DQLKQN--ATKAKIPFYGSYTE---TDPAQIAAEGVAKFKEEGYEVIIV 189
                 5788999****************************988...5777876..665544..44444433333333...334566667777788888888888 PP

                 EEESSTTHHHH CS
        MeaB 128 etvGvGqsevd 138
                 +t G    e +
  KOO24534.1 190 DTSGRHMQEEA 200
                 88886655555 PP

  == domain 2  score: -3.2 bits;  conditional E-value: 4.1
                 EEEEBCCCTBSHHHHHHHHHHHHHHHHHTTHHH CS
        MeaB 207 vlktsavegeGidelvdaieehrevlkktGlle 239
                 + + s+   + ++el+++ +  +++++kt +++
  KOO24534.1 386 IARGSGHYPHEVAELLEQFKLMQTTMQKTMKKS 418
                 333344444455555555555556666654443 PP

>> CbiA  CobQ/CobB/MinD/ParA nucleotide binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.0       6.8   5.3e+03      17      34 ..      33      50 ..       6      69 .. 0.55
   2 ?   11.5   0.0   0.00029      0.23       9      37 ..     111     139 ..     105     240 .. 0.89

  Alignments for each domain:
  == domain 1  score: -2.6 bits;  conditional E-value: 6.8
                HHHHHHHHHTT--EEEEE CS
                xxxxxxxxxxxxxxxxxx RF
        CbiA 17 anLaralarrglrVllvD 34
                a +++al ++  +V+ v+
  KOO24534.1 33 AEICKALLQADVNVAQVK 50
                223333333333333222 PP

  == domain 2  score: 11.5 bits;  conditional E-value: 0.00029
                 TSSHHHHHHHHHHHHHHTT--EEEEEEEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        CbiA   9 GvGKTtlaanLaralarrglrVllvDaDp 37 
                 G GKTt++++ a + +r+g++ +lv aD+
  KOO24534.1 111 GCGKTTTCTKYAHLYKRKGFKCALVCADT 139
                 89*********************997775 PP

>> APS_kinase  Adenylylsulphate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   9.7e-05     0.076       2      52 ..     101     151 ..     100     157 .. 0.90

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 9.7e-05
                 -EEEEEESSTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHTTTTTTT--SS CS
  APS_kinase   2 gvvvwltGlsgsGKstianalekkLvekgisvylLdGdnvRhgLnkdLgfs 52 
                 + v+++ Gl g GK+t  ++ ++  ++kg ++ l+  d+ R g   +L ++
  KOO24534.1 101 PNVIMFVGLQGCGKTTTCTKYAHLYKRKGFKCALVCADTFRAGAFDQLKQN 151
                 789********************99****************9988887665 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0    0.0002      0.15       1     105 [.     104     217 ..     104     220 .. 0.69

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 0.0002
      AAA_18   1 IlltGtpGvGKttlakeL...skrlgf..............gvnlrdvakenglllevdpealdeskrldedkldklldaleenssaleegknlvidgh 82 
                 I+  G +G+GKtt +       kr gf               ++l+++a++  + ++    ++d+ +++ e++      +++e     e  +++++d  
  KOO24534.1 104 IMFVGLQGCGKTTTCTKYahlYKRKGFkcalvcadtfragaFDQLKQNATKAKIPFYGSYTETDPAQIAAEGV-----AKFKE-----EGYEVIIVDTS 192
                 8999***********8653334544556688888888888888888888888888888887445555554444.....45555.....34688888888 PP

      AAA_18  83 laeleseaakdikk..vvLtaspee 105
                   ++ +ea+++       Lt ++++
  KOO24534.1 193 GRHMQEEALFEEMEqvAQLTSPDDI 217
                 8888877777655566666666665 PP

>> ResIII  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0   0.00012     0.091      21      63 ..      67     139 ..      42     213 .. 0.69

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 0.00012
                 .................................TTSEEEEEESTTSTHHHHHHHHHHHH-S.....-EEEEESS CS
      ResIII  21 s...............................krdkrglikmaTGtGKTlvaaklierllkkgkeekflflvpr 63 
                 s                               k+ + ++++   G+GKT +++k +  +++kg  + +l+ +++
  KOO24534.1  67 SglnkrkmleqavcnelcamldpgkepyvpkkKQPNVIMFVGLQGCGKTTTCTKYAHLYKRKGF-KCALVCADT 139
                 044445556666666666667778888888756666778*********************9966.355555554 PP

>> AAA_7  P-loop containing dynein motor region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   0.0   0.00063      0.49      34      64 ..     102     132 ..      97     161 .. 0.84
   2 ?    0.5   0.0      0.46   3.6e+02     100     135 ..     358     393 ..     354     424 .. 0.72

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.00063
       AAA_7  34 kpvllvGptGtGKtviikdllkkldkekyls 64 
                 + +++vG +G+GKt++++++ + ++++ +++
  KOO24534.1 102 NVIMFVGLQGCGKTTTCTKYAHLYKRKGFKC 132
                 568****************998887766655 PP

  == domain 2  score: 0.5 bits;  conditional E-value: 0.46
       AAA_7 100 kklvvFvDDlnmpakekygaqppiellRqlldyggw 135
                 kk ++++D +   + ++  a  p  ++R     g++
  KOO24534.1 358 KKWMTMMDSMTEAELDETKAMAPSRIIRIARGSGHY 393
                 888999999999***********9999988777664 PP

>> AAA_24  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   0.00029      0.22       3      77 ..     102     195 ..     100     226 .. 0.70
   2 ?   -1.8   0.0       2.7   2.1e+03      42      60 ..     353     375 ..     340     425 .. 0.67

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00029
      AAA_24   3 lkiliyGpsgiGKTtlakel.........gpkplfidtekGlksldadkfpdieswedfldevvel...........aaeladyktlviDtidel 77 
                 + i+ +G +g GKTt+++++         +   ++ dt++ + + d  k +  ++ + f+  ++e            + ++++y+++++Dt +  
  KOO24534.1 102 NVIMFVGLQGCGKTTTCTKYahlykrkgfKCALVCADTFR-AGAFDQLKQNATKAKIPFYGSYTETdpaqiaaegvaKFKEEGYEVIIVDTSGRH 195
                 578999**************77777665545555556666.3334444443334444455555555888999999999999*********97754 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 2.7
      AAA_24  42 kfpdieswedfldevvel....a 60 
                  +++i++w +++d ++e      
  KOO24534.1 353 SGVRIKKWMTMMDSMTEAeldeT 375
                 45677788888888777644430 PP

>> TrkA_N  TrkA-N domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.2   0.2      0.13     1e+02       8      57 ..       5      59 ..       3      67 .. 0.66
   2 ?    8.1   0.1     0.004       3.1      33      74 ..     175     216 ..     165     240 .. 0.82

  Alignments for each domain:
  == domain 1  score: 3.2 bits;  conditional E-value: 0.13
                HHHHHHHHHHHHTTEEEEEEESSH......HHHHHHHHTTSEEEES-TTSHHHHHH CS
      TrkA_N  8 rvGrslaeeLseggkdvvvidkde......erveelreeglevvvgdatdeevLee 57
                ++G+++a+ L++   + +v+d+        e ++ l +  ++v +  a +e++ ++
  KOO24534.1  5 DLGSKVADALRKMT-RATVVDQTVmnemlaEICKALLQADVNVAQVKALRESIKKN 59
                579*********88.48999986432233244666666666676666666666555 PP

  == domain 2  score: 8.1 bits;  conditional E-value: 0.004
                 HHHHHHHTTSEEEES-TTSHHHHHHTTGGGESEEEE-SSSHH CS
      TrkA_N  33 rveelreeglevvvgdatdeevLeeagiekadaviaatgdde 74 
                  v++++eeg+ev++ d + +++ eea  e+++ v  +t+ d+
  KOO24534.1 175 GVAKFKEEGYEVIIVDTSGRHMQEEALFEEMEQVAQLTSPDD 216
                 588999***************************999996543 PP

>> Fis1_TPR_C  Fis1 C-terminal tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.2   0.00015      0.12      23      52 ..      35      64 ..      33      65 .. 0.91

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 0.00015
                HHHHHHHHTTS-HHHHHHHHHHHHHHHHTT CS
  Fis1_TPR_C 23 yvdalLeiEPenrQaqsLkeliedkikkeg 52
                 ++alL+ + +  Q+++L+e i+++++ e 
  KOO24534.1 35 ICKALLQADVNVAQVKALRESIKKNVDVEA 64
                79***********************98776 PP

>> AAA_28  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.1   0.00049      0.38       2      50 ..     104     159 ..     103     215 .. 0.66

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00049
      AAA_28   2 ivitGgestGKTtlleaLa...ar.gypvv...pEaareileeklakgedalpwve 50 
                 i+++G +++GKTt++ + a   +r g+++    ++++r   +++l+++  +++  +
  KOO24534.1 104 IMFVGLQGCGKTTTCTKYAhlyKRkGFKCAlvcADTFRAGAFDQLKQNATKAKIPF 159
                 8899***********66664445577774434799999999999988876665433 PP

>> 6PF2K  6-phosphofructo-2-kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.5       1.4   1.1e+03      75     135 ..      22      82 ..      14      86 .. 0.78
   2 ?    9.9   0.0   0.00053      0.41       8      58 ..      97     146 ..      91     207 .. 0.79
   3 ?   -4.1   0.0        10   7.8e+03      64      92 ..     298     326 ..     280     329 .. 0.56

  Alignments for each domain:
  == domain 1  score: -1.3 bits;  conditional E-value: 1.4
                 HHHHHHHHHHHHHHHHHHHTS--SEEEEES---SHHHHHHHHHHHHHTT-EEEEEEEE--H CS
       6PF2K  75 klreklalaalkdllaylneeegqvaifDAtNttrerRklilefveennlkvlflesicsd 135
                  + +++  ++l ++ + l + + +va   A+  ++++   + + ++  n + ++ +++c++
  KOO24534.1  22 VVDQTVMNEMLAEICKALLQADVNVAQVKALRESIKKNVDVEALASGLNKRKMLEQAVCNE 82 
                 5566777788999999999999999988888888888888888888888888887888775 PP

  == domain 2  score: 9.9 bits;  conditional E-value: 0.00053
                 HT..S-EEEEEESSTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHHHS CS
       6PF2K   8 nlknsklvivlvGLpargKtyiskkltrylkwlgvrtkvFnvgkyrreask 58 
                 + k+++ vi++vGL   gKt++ +k  +  k  g+++    +  +r  a  
  KOO24534.1  97 K-KKQPNVIMFVGLQGCGKTTTCTKYAHLYKRKGFKCALVCADTFRAGAFD 146
                 4.78899*********************99999999876555555554444 PP

  == domain 3  score: -4.1 bits;  conditional E-value: 10
                 GGGSTT-HHHHHHHHHHHHHHHHHHHHHH CS
       6PF2K  64 effrpdneealklreklalaalkdllayl 92 
                 ++   + +  + +r +  + +l+d+++ +
  KOO24534.1 298 DVDLEKQAPEMMKRLQSGQWTLRDMREQF 326
                 33333444445556666666666666655 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.0         4   3.1e+03      77      94 ..      19      36 ..      11      49 .. 0.76
   2 ?   10.4   0.4   0.00084      0.66       1      25 [.     104     128 ..     104     219 .. 0.78
   3 ?   -2.5   0.0       8.3   6.5e+03      64      98 ..     372     409 ..     371     420 .. 0.65
   4 ?   -2.7   0.1       9.5   7.4e+03      79      98 ..     452     471 ..     430     474 .. 0.63

  Alignments for each domain:
  == domain 1  score: -1.5 bits;  conditional E-value: 4
                CCCHHHHHHHHHHHHHHH CS
         AAA 77 seseeeervvnqLlteld 94
                +++ ++++v+n++l+e+ 
  KOO24534.1 19 RATVVDQTVMNEMLAEIC 36
                567889999999999885 PP

  == domain 2  score: 10.4 bits;  conditional E-value: 0.00084
                 EEEESSTTSSHHHHHHHHHHHHTHE CS
         AAA   1 vllyGppGtGKTllakavakelgve 25 
                 ++++G  G+GKT+++   a+  +++
  KOO24534.1 104 IMFVGLQGCGKTTTCTKYAHLYKRK 128
                 589************9999887644 PP

  == domain 3  score: -2.5 bits;  conditional E-value: 8.3
                 EETGGGHHHHH...TTCCCHHHHHHHHHHHHHHHHTTT CS
         AAA  64 iDEidalaksr...sgseseeeervvnqLlteldgvkk 98 
                 +DE  a+a+sr     + s++    v++Ll++++ +++
  KOO24534.1 372 LDETKAMAPSRiirIARGSGHYPHEVAELLEQFKLMQT 409
                 68888888888776444555555556666666665554 PP

  == domain 4  score: -2.7 bits;  conditional E-value: 9.5
                 CHHHHHHHHHHHHHHHHTTT CS
         AAA  79 seeeervvnqLlteldgvkk 98 
                 +  +++ ++++++e+++++k
  KOO24534.1 452 HLGGQQGIEAMMAEMEKEEK 471
                 44455666777777777665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (477 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1280  (0.0713927); expected 358.6 (0.02)
Passed bias filter:                      675  (0.0376485); expected 358.6 (0.02)
Passed Vit filter:                       100  (0.00557756); expected 17.9 (0.001)
Passed Fwd filter:                        23  (0.00128284); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              23  [number of targets reported over threshold]
# CPU time: 0.63u 0.28s 00:00:00.91 Elapsed: 00:00:00.42
# Mc/sec: 3431.01
//
Query:       KOO24535.1  [L=420]
Description: membrane protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.4e-27   96.1   1.9    3.8e-27   95.5   1.9    1.2  1  Bestrophin  Bestrophin, RFP-TM, chloride channel


Domain annotation for each model (and alignments):
>> Bestrophin  Bestrophin, RFP-TM, chloride channel
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   95.5   1.9   2.1e-31   3.8e-27      50     290 ..      41     262 ..       2     269 .. 0.72

  Alignments for each domain:
  == domain 1  score: 95.5 bits;  conditional E-value: 2.1e-31
  Bestrophin  50 fellsicelipLsfvLgFrvnavydRWweqrkllgwldkaarslarqvrglsdeegrlarrtilrylvlllvlffralssrvrkrfptlehlleagllt 148
                    +      +Lsf+++Fr++a++dRWwe+r ++   ++ +r+l+ ++ +      + a ++++    + +v+f+ + ++ +r++  +++++  +  + 
  KOO24535.1  41 HVVM----GGALSFLIVFRTQASFDRWWEARCAWQDAVTSCRALVVTTGAAL---CDDAAQERF---SMQVVAFAVSFKAYLRGTAVSPDEVGFR--MS 127
                 2233....348**********************************9999943...356667777...779********************85433..44 PP

  Bestrophin 149 eeeakilenkywvplqWavsllrrlaerlke.lakegrikddqalkeleeelnelraklgsleridwtpiPlvYtqvvtravylyfllallgrqfldse 246
                  e    l+++  +pl+    ++r+la+ ++  l  +        ++e +e++  l +++g +eri+ tp+ ++Y  ++  +++l++++           
  KOO24535.1 128 WEHVMLLNKSSCPPLV----AIRELASTVRFnLPTDTTGLGTSIYDEAVEQMRVLMSAVGVCERIKQTPMTFCYIATLRSFLVLWLAT----------- 211
                 4445455588889999....66666655433222222222223667******************************************........... PP

  Bestrophin 247 idlylPvftllq............faffffGllkvaeqlenPFGedddDlelnali 290
                     lP  +l+             + f+f+ +++ a ++e+PFG+d +Dl+l+  i
  KOO24535.1 212 ----LP-SSLIGeygwvavpalsvIGFLFLTVEQMAIEIEQPFGNDANDLPLESYI 262
                 ....44.44444444444444444556*************************9873 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (420 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       502  (0.0279993); expected 358.6 (0.02)
Passed bias filter:                      393  (0.0219198); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.26s 00:00:00.75 Elapsed: 00:00:00.42
# Mc/sec: 2999.47
//
Query:       KOO24536.1  [L=581]
Description: n-acetylgalactosamine 6-sulfate sulfatase, partial [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    6.2e-50  170.3   0.0    8.6e-50  169.9   0.0    1.2  1  Sulfatase     Sulfatase
    1.6e-07   31.2   0.0     0.0056   16.3   0.0    2.3  2  Phosphodiest  Type I phosphodiesterase / nucleotide pyrophosp


Domain annotation for each model (and alignments):
>> Sulfatase  Sulfatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  169.9   0.0   9.6e-54   8.6e-50       2     308 ..      18     361 ..      17     362 .. 0.89

  Alignments for each domain:
  == domain 1  score: 169.9 bits;  conditional E-value: 9.6e-54
                 EEEEEEESSE-TTGSGGGTTTSCS.SHHHHHHHHTSEEESSEE-SSSSHHHHHHHHHHSS-HHHHTHSSCCSTTTHHCTTTS-HHHHHHHHTT-EEEEE CS
   Sulfatase   2 nvvliladdlgagdlglyggktat.tpnldrlaeeglrftnfysaaplcspsraalltgryphnsgvasntevgggglpqteatLpellkeaGYntaai 99 
                 ++v +l+dd+g+g ++  + + +  tpnl+++a++glr+ ++ys++p+csp+raalltgr ph++gv +++     +l   e t++  l++aG + a +
  KOO24536.1  18 HIVQLLSDDQGWGEVEWRDPEKRLrTPNLAAMAANGLRLERYYSGSPVCSPARAALLTGRAPHRTGVDNQG----MPLRLQEKTVAHALQRAGWHCAHF 112
                 68999********999999877766*****************************************64444....89********************** PP

                 EES-SCCSGGGSHHC.............CTTTSEEEETSSSCHHTCCCCCCCCCECTCCCTTTTCSHHHHHHHHHHHHH...HCCC.TSSEEEEEEE-T CS
   Sulfatase 100 gkwhlgwssrqsvyk.............nrgfdrflgfptgsaalkdpekseyngevlrvppeggysddrlldealefl...larn.dkpfflylatla 181
                 gk hl  +   +                + gf++++++ ++ + +   ++++ +          g  +++++ eal+f+   ++++  kp f+ +++ +
  KOO24536.1 113 GKMHLEGIHSLGI-GggptlgnyshrpsAFGFETWISNYGVFDLDPLLSREGEIEAF------RGEGSEVIVREALNFIrreAKAPyPKPLFVAVHYAS 204
                 *****99966653.2477899999999999999999988888888777766666544......58889999999****999988889************ PP

                 TSSSTCTCGGHTCCGSTTTTCCCCCCH..............................HHHHHHHHHHHHHHHHHHHHHHHHHHTTTGGGEEEEEEESSS CS
   Sulfatase 182 pHappeapdeyakkyatffddgseaar..............................qlleaylnsveyvDdligrvlaaLeenglldntlvvftSDhg 250
                 pH p++a    ++ +++    ++   r                              +++  y++ +++ D  +g   + L+e+g  + tl+ f SD+g
  KOO24536.1 205 PHDPWYAHTADQALFRDLI-RCE---RyktpkacvptrvkgrfaapvwprdcdcfleHHVVRYYAELHSLDRSVGTMRKGLRELGIENRTLLWFSSDNG 299
                 ***9888777777765442.233...2336888999999999********************************************************* PP

                 SCCCG.....HHTTSSSCTTCSSSHHHHBEEEEEEETTTSHCEEECSEEEGGGHHHHHHHHTT CS
   Sulfatase 251 aslee.....sngplrggkganayeggtrvPllvwwpgekaprvseelvshiDlfptildlag 308
                 a+         ng l+g k+ ++ egg+rvP++v wpg ++pr+ + +vs+ D+fpti++ +g
  KOO24536.1 300 AQPFHevpddPNGGLHGFKK-QMLEGGIRVPAIVEWPGVISPRITHYPVSAYDFFPTIAEIVG 361
                 *99999**************.**************************************9988 PP

>> Phosphodiest  Type I phosphodiesterase / nucleotide pyrophosphatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.0   6.3e-07    0.0056      19      66 ..      40      87 ..      32     106 .. 0.82
   2 !   12.7   0.0   7.9e-06     0.071     199     237 ..     265     303 ..     253     389 .. 0.92

  Alignments for each domain:
  == domain 1  score: 16.3 bits;  conditional E-value: 6.3e-07
                  S.TSHHHHHHHHHSEEESEEE-SSS-SHHHHHHHHHHSS-HHHHS--SS CS
  Phosphodiest 19 e.llpnlaaLakegvsapnlrpvfPtlTfpnhaslvTGlyPgeHGivgN 66
                  + ++pnlaa+a +g++ +  + +  ++  p+ a+l+TG+ P  +G+ ++
    KOO24536.1 40 RlRTPNLAAMAANGLRLE-RYYSGSPVCSPARAALLTGRAPHRTGVDNQ 87
                  349***************.55566667789***************9665 PP

  == domain 2  score: 12.7 bits;  conditional E-value: 7.9e-06
                   HHHHHHHHHHHHHHHHHHHTTGTTTEEEEEEES---EEE CS
  Phosphodiest 199 dalrrvDkaigdLlealderglsaetniilvSDHGmadv 237
                   ++l+++D+ +g ++++l+e g+++ t +  +SD G+++ 
    KOO24536.1 265 AELHSLDRSVGTMRKGLRELGIENRTLLWFSSDNGAQPF 303
                   6899********************************997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (581 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       243  (0.0135535); expected 358.6 (0.02)
Passed bias filter:                      234  (0.0130515); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.50u 0.26s 00:00:00.76 Elapsed: 00:00:00.42
# Mc/sec: 4185.17
//
Query:       KOO24537.1  [L=263]
Description: hypothetical protein Ctob_004959 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (263 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       414  (0.0230911); expected 358.6 (0.02)
Passed bias filter:                      288  (0.0160634); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.44u 0.25s 00:00:00.69 Elapsed: 00:00:00.42
# Mc/sec: 1902.10
//
Query:       KOO24538.1  [L=281]
Description: hypothetical protein Ctob_004949 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.5e-15   56.2   0.0    4.8e-15   55.8   0.0    1.2  1  DEAD        DEAD/DEAH box helicase
    1.3e-08   35.1   0.0    1.9e-08   34.6   0.0    1.3  1  Helicase_C  Helicase conserved C-terminal domain
    0.00044   20.3   0.0    0.00057   19.9   0.0    1.2  1  ResIII      Type III restriction enzyme, res subunit


Domain annotation for each model (and alignments):
>> DEAD  DEAD/DEAH box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.8   0.0   8.1e-19   4.8e-15       2      65 ..     118     186 ..     117     207 .. 0.93

  Alignments for each domain:
  == domain 1  score: 55.8 bits;  conditional E-value: 8.1e-19
                 HHHHHHHHHHH......TTCEEEEEESTTSSHHHHHHHHHHHHHHHSTTSTS-EEEEEESSHHHHHHHHH CS
                 xxxxxxxxxxx......xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD   2 diQaeaiplil......gggdvlvaaeTGsGKTlaflipvlqivyetkgktgpkalivePtreLaeqtln 65 
                 ++Qa+++p +l      +  dv+v+a+TGsGKTla+++p++q+++  +  t+ +al++ Ptr La q +n
  KOO24538.1 118 PVQAAVVPVVLaahaarRAADVCVCAPTGSGKTLAYALPIVQALLP-RVVTRLRALVLLPTRGLAAQLVN 186
                 89*********777665558************************98.9*******************987 PP

>> Helicase_C  Helicase conserved C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.6   0.0   3.2e-12   1.9e-08      46      97 ..     223     279 ..     188     281 .] 0.79

  Alignments for each domain:
  == domain 1  score: 34.6 bits;  conditional E-value: 3.2e-12
                 ESTTSTHHHHHHHHHHHH.....TTSSSEEEESGGGTSSSTSTTESEEEESSSSSSH CS
  Helicase_C  46 lhgelpqnereeileqfn.....kgesdvLiatdvaerGidipkvnlVinfdlprnv 97 
                 l g l+++ +e+  e+       +g+++vLia+d+++rG+d+++v++Vin+d+p n+
  KOO24538.1 223 LRGLLEAEAQEAEAEDVAeggraEGQTRVLIASDAMARGMDVEGVSVVINYDPPANI 279
                 5555666666655555544444679999**************************986 PP

>> ResIII  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.9   0.0   9.5e-08   0.00057       5      72 ..     117     186 ..     113     237 .. 0.84

  Alignments for each domain:
  == domain 1  score: 19.9 bits;  conditional E-value: 9.5e-08
                 -HHHHHHHHHHT......TTSEEEEEESTTSTHHHHH.HHHHHHH-S......-EEEEESSHHHHHHHHH CS
      ResIII   5 reyQeeaienlleklkskrdkrglikmaTGtGKTlva.aklierllkkgkee.kflflvprkslleqtle 72 
                  + Q+ ++  +l++  ++r   +++ ++TG+GKTl + + ++++ll     + ++l+l p++ l  q+ +
  KOO24538.1 117 FPVQAAVVPVVLAAHAARRAADVCVCAPTGSGKTLAYaLPIVQALLPRVVTRlRALVLLPTRGLAAQLVN 186
                 677888888888887778999****************5566666666555448************99974 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (281 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       348  (0.0194099); expected 358.6 (0.02)
Passed bias filter:                      253  (0.0141112); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.45u 0.19s 00:00:00.64 Elapsed: 00:00:00.38
# Mc/sec: 2216.42
//
Query:       KOO24539.1  [L=435]
Description: 60s ribosomal protein l2 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.6e-41  140.3   3.4    3.6e-41  140.3   3.4    2.2  2  Ribosomal_L2_C  Ribosomal Proteins L2, C-terminal domain
    1.4e-15   57.0   0.4    3.3e-15   55.8   0.4    1.7  1  Ribosomal_L2    Ribosomal Proteins L2, RNA binding domain


Domain annotation for each model (and alignments):
>> Ribosomal_L2_C  Ribosomal Proteins L2, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.8   0.1     0.059   5.3e+02      47      75 ..     161     189 ..     135     236 .. 0.73
   2 !  140.3   3.4     4e-45   3.6e-41       2     115 ..     274     399 ..     273     408 .. 0.92

  Alignments for each domain:
  == domain 1  score: 0.8 bits;  conditional E-value: 0.059
                     EEEEEETTS-EEEEETTSBEBES-BS-TT CS
  Ribosomal_L2_C  47 kvtvklpSgevrkvssecrAtiGvvsnge 75 
                       +v + Sg+ r+++++ r + G+  + +
      KOO24539.1 161 AWRVTIASGTDRTIHNQGRVIRGQRKGRG 189
                     46788999999999999999988766654 PP

  == domain 2  score: 140.3 bits;  conditional E-value: 4e-45
                     SSS-EBSSSS-TTB-BBSE-SSTTS--SSS-SSSB-EEBB-B...SSEEEEEETTS-EEEEETTSBEBES-BS-TTCTT----STTHHHHT.... CS
  Ribosomal_L2_C   2 vGnvlplknipeGtivhnielkpgkggklarsaGtyaqvvak..egkkvtvklpSgevrkvssecrAtiGvvsngehkekklgkAgrkrwl.... 90 
                     +Gnv+pl+++p Gt++ n+e++ g++gk+a+++G +aq++++     +++++lpSg++++v s +rAt+G+v++g++ +k+l+kAgr+ ++    
      KOO24539.1 274 PGNVMPLASMPPGTVINNVEKHAGDKGKYAKTSGGFAQIIGHidGAGMTRLRLPSGQKKTVTSMARATVGIVAGGGRIDKPLLKAGRAFHKfrvk 368
                     7*****************************************84489************************************************ PP

                     .TBS----SSSS-TTTSSS--SS....SS.- CS
  Ribosomal_L2_C  91 .grrpkvrGvamnpvdHphGGGe....Gk.t 115
                      + +p++rGvamnp++HphGGG+    G+ +
      KOO24539.1 369 rNSWPRTRGVAMNPCEHPHGGGNhqhiGHpS 399
                     ***********************55555542 PP

>> Ribosomal_L2  Ribosomal Proteins L2, RNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.8   0.4   3.7e-19   3.3e-15       1      76 [.     187     265 ..     187     266 .. 0.92

  Alignments for each domain:
  == domain 1  score: 55.8 bits;  conditional E-value: 3.7e-19
                   TB-TT--BSSTT--------EE-B--S---SS--EEEEEEE--TT-SS-EEEEEETTTEEE.....EEE--SS--SS-EE- CS
  Ribosomal_L2   1 GrnnsgritvrhrggGhkkkyrlidfkrnkekvkgkVveieyDpgRsApiAlvkyedgekr.....yiiapeglkvGdtvv 76 
                   Gr++ + ++++hr+g      ++idf++++++++g+V++i++DpgR ApiA ++++d  ++        a+eg+ +G++++
    KOO24539.1 187 GRGSVFVSHTKHRKG--ACGLKAIDFAERHGYIRGVVKDIIHDPGRGAPIAKIQFNDRYRFkkvnvQWTATEGMYTGQFIY 265
                   9**************..889*************************************5555667776689*********98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (435 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       898  (0.0500865); expected 358.6 (0.02)
Passed bias filter:                      456  (0.0254337); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.52u 0.23s 00:00:00.75 Elapsed: 00:00:00.39
# Mc/sec: 3325.14
//
Query:       KOO24540.1  [L=701]
Description: isopenicillin n synthase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
      4e-31  108.8   0.4    6.5e-30  104.8   0.4    2.2  1  TauD          Taurine catabolism dioxygenase TauD, TfdA famil
    9.8e-19   67.7   0.0      2e-18   66.7   0.0    1.5  1  2OG-FeII_Oxy  2OG-Fe(II) oxygenase superfamily
  ------ inclusion threshold ------
       0.18   12.6   0.0        1.2   10.0   0.0    2.1  2  DIOX_N        non-haem dioxygenase in morphine synthesis N-te


Domain annotation for each model (and alignments):
>> TauD  Taurine catabolism dioxygenase TauD, TfdA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  104.8   0.4   1.1e-33   6.5e-30      14     266 ..     367     690 ..     354     691 .. 0.82

  Alignments for each domain:
  == domain 1  score: 104.8 bits;  conditional E-value: 1.1e-33
        TauD  14 vdlsdleslddel.keelrell.aeygvvvfrgfplspeqqlefarrfG.........................plygtpgrgtntkygevld...vss 82 
                 +dl +   ++d    e + +++ ++ g++v+r++ lspe  +++  r+G                         p  +  g ++ +   e+++   v +
  KOO24540.1 367 IDLLS---VSDGViDELIAAMHaDGKGLLVVRNQTLSPEGYERALFRLGraaggfgtpllydrwpgqsprlrccPHVSLLGNYRARVDDELGTgavVGD 462
                 55544...444442455555556899*************999999999999999*****9999999999888884444444455555555555333333 PP

        TauD  83 vyesadianlayttllwHtDlsylesppgiqlLhcleapa....................................tGGetpfvDgraaynaLpeelpe 145
                 +  + ++a+   + + wHtD s+l +p   + L++  a +                                    +GG+t+f++g   y++L+++ +e
  KOO24540.1 463 RIGEYKPAR--EELREWHTDGSFLARPKIGVALYAPSAVPvatcapcakpsawwrkllrwpcrptcrhapasalppEGGHTAFASGILGYERLDAAERE 559
                 333333333..44444*********************9666********************************************************** PP

        TauD 146 llegltavrvyyhyrg.....gglrteqelpavdkhprtghpvvrthpvltgrkallvnppfatri..eglgtpeskelldaleelled...peftyrf 234
                 +le l+av+++ +  +     + +r++ + ++++k+p + +p+vrthpv t r++l+ np+   ri    +g+p s+e+ + l   l++   +  ty +
  KOO24540.1 560 QLESLSAVHSWCDFMHflearDPGREKVSADDCAKKPDVTWPLVRTHPV-TNRRSLYLNPKNGLRIvhSSDGEPASAEMSASLVLNLTKrvlELGTYHH 657
                 ************************************************8.*********767777755567778888888777777777676788**** PP

        TauD 235 qwqeGdlvifdNrrvlHgrtafdeg.eeRhllr 266
                 +w++Gdlv+ dNr + H++t+fd++ +eR ++r
  KOO24540.1 658 TWRPGDLVLMDNRVLIHAATPFDADkYERLIYR 690
                 **********************75547898887 PP

>> 2OG-FeII_Oxy  2OG-Fe(II) oxygenase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.7   0.0   3.3e-22     2e-18       6      98 ..     168     264 ..     163     266 .. 0.87

  Alignments for each domain:
  == domain 1  score: 66.7 bits;  conditional E-value: 3.3e-22
                   EEEE..E-S------...---EEEEEESSSEEEEEEE-TT---EEEETEEEE----TTEEEEEE-HHHHHHTTS-S----EEE----GTGSEEEEEE CS
  2OG-FeII_Oxy   6 vlny..ypphpdpev...ilglgahtdaslltillqddvgglevfkdgkwlrvppvdnslivniGdallflsngryksvlHrVlpvnegerRvsiay 97 
                   vl    y p  d      ++g gah d + lt+ll+dd+ gl+v+  g+wl vpp  + +ivn+Gd+++ l+ng y+s++HrV  ++  + R+s a+
    KOO24540.1 168 VLKQlrYGPGRDALAngsSIGAGAHADWGSLTLLLTDDTPGLQVEMAGEWLPVPPRRGMFIVNAGDQIEALTNGHYRSAKHRVI-TTSPRPRYSTAF 263
                   5555556888666656779*************************88899**********************************8.555566****** PP

                   E CS
  2OG-FeII_Oxy  98 f 98 
                   f
    KOO24540.1 264 F 264
                   9 PP

>> DIOX_N  non-haem dioxygenase in morphine synthesis N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   0.0   0.00019       1.2      48      98 ..      25      82 ..      10     102 .. 0.73
   2 ?   -0.6   0.0      0.36   2.2e+03      72     101 ..     548     582 ..     542     601 .. 0.66

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.00019
      DIOX_N 48 feaareFFalPeeeKeklaksp.sfrGysrlgeektdg.......kkldwkesfdlgte 98
                +e+ r++F+lP+++K+ +a +     Gy++ g+ + +        +  d ke+f l  +
  KOO24540.1 25 LEQNRRLFDLPDQVKRSMAFNVtLDIGYTG-GTGTSQAldpnagiQAADTKEGFMLTNN 82
                6889**************665424466665.222222234589999*******998776 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 0.36
      DIOX_N  72 rGysrlgeektdg.....kkldwkesfdlgtelpe 101
                  Gy+rl + + ++     +++ w++++++    ++
  KOO24540.1 548 LGYERLDAAEREQleslsAVHSWCDFMHFLEARDP 582
                 56666655444445558889999999999877443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (701 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       258  (0.0143901); expected 358.6 (0.02)
Passed bias filter:                      230  (0.0128284); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.57u 0.21s 00:00:00.77 Elapsed: 00:00:00.39
# Mc/sec: 5415.69
//
Query:       KOO24541.1  [L=415]
Description: vacuolar amino acid transporter 6, partial [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.5e-49  168.1   0.0    8.5e-49  166.3   0.0    1.7  1  Aa_trans  Transmembrane amino acid transporter protein
  ------ inclusion threshold ------
       0.28   11.6   2.1       0.58   10.6   0.1    2.6  2  DUF3357   Domain of unknown function (DUF3357)
        3.9    7.9   7.5        0.4   11.0   0.2    2.4  2  DUF3446   Early growth response N-terminal domain
        7.2    6.8   7.7        4.5    7.4   0.0    3.2  3  SPC12     Microsomal signal peptidase 12 kDa subunit (SPC12)


Domain annotation for each model (and alignments):
>> Aa_trans  Transmembrane amino acid transporter protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  166.3   0.0   1.9e-52   8.5e-49      80     400 ..      14     404 ..       7     414 .. 0.88

  Alignments for each domain:
  == domain 1  score: 166.3 bits;  conditional E-value: 1.9e-52
    Aa_trans  80 pkgkliidlailvqlfGvgvsyliligdllpaifesffdt.lllsnvyfilisaliiipLslipnlskLsylSllalvsslyyivilvlvvaelvklel 177
                 p++ l++d+ai +++fGv++ yli++gd+lp  +e +  t  ll++  +++ +al+++pL+  + ++ L+ +Sl+a++s+l+++++++++ +    + +
  KOO24541.1  14 PNLGLLVDVAIGIKCFGVATTYLIVVGDSLPLALEPLGATgALLDRRLWSALAALAVAPLAYRKRMDGLRHTSLIAILSVLVIMAVVIAFAIGPALSPA 112
                 456679**************************999977667999*************************************994444444444443333 PP

    Aa_trans 178 kgvseetv....................kkasklkglflaigiivFAftghavlleiqnelkd..pskfkkmtkvlllsiilatvlyilvGlvGYltFG 254
                  +   +t+                    +  s+ ++++ a++i  FA+t+h ++++i ne+    +++ + + +v+  +  +a ++y++v+++GY tFG
  KOO24541.1 113 LDPCASTSaqsscraegaevvcscrgpvVAVSDASSILRALPIYTFAYTCHQNIVSISNEMALdgRPAPERVIRVIQGALPFALAVYFSVAVAGYSTFG 211
                 3333333334556666667777777779999999***************************86564554789*************************** PP

    Aa_trans 255 nevkgnillnlpkssilivivnlllvlhlilsfplqlhplrqvvenllikk................................................ 305
                 n v   +l+++p s  l   ++ll+++ +++s+plq hp r+    +                                                    
  KOO24541.1 212 NRVAHDVLTSYPSSP-LVSGARLLVAVLVMFSYPLQSHPGRACALSIASAAaaalerrrrqrsgpraisssqahsatpdgssrrkgsldhmtrcrqwpc 309
                 **************9.**************************9999998779*********************************************** PP

    Aa_trans 306 ......eavagasekeapkskllrlvirlllvvityliAlsvpslakvlslvGatsstplsfilPalfhlkliktekksleklvkkkildlicivlgll 398
                       e ++g    + + s + r ++++l++++t+  A+    l+ vls+vGat+s+  ++ lP++ +++l++++  +l++ ++ ++l      lg++
  KOO24541.1 310 ffngpsEDPTGLPLPPLTESDTARALATTLFLAVTTSTAMALDDLGIVLSVVGATGSVVVTYLLPGFCYYRLCRQPRSWLRRAALLQTL------LGAI 402
                 *****99999999999999999***********************************************************99887665......2333 PP

    Aa_trans 399 lv 400
                 l+
  KOO24541.1 403 LM 404
                 33 PP

>> DUF3357  Domain of unknown function (DUF3357)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.1   0.00013      0.58      22      90 ..      83     149 ..      55     156 .. 0.70
   2 ?   -1.3   0.1      0.67     3e+03      21      46 ..     186     208 ..     171     247 .. 0.60

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00013
     DUF3357  22 pllaavliasalvvlvvlvalagvrlagqaslvapgevavsetaesvsaaveetaSRGveaGVSeKssg 90 
                    ++++i+s+lv+++v++a+a    a +    +p   ++++ +  ++ a ++ + RG+   VS+ ss+
  KOO24541.1  83 RHTSLIAILSVLVIMAVVIAFA-IGPALS-PALDPCASTSAQSSCRAEGAEVVCSCRGPVVAVSDASSI 149
                 4678999*******99998887.333333.22233333343433344666679999********99886 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 0.67
     DUF3357  21 rpllaavliasalvvlvvlvalagvr 46 
                 r + +  l ++ +v ++v+v  ag+ 
  KOO24541.1 186 R-VIQGALPFALAVYFSVAV--AGYS 208
                 4.444445555555555554..4442 PP

>> DUF3446  Early growth response N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.2     9e-05       0.4      19      79 ..      86     157 ..      76     166 .. 0.62
   2 ?   -1.2   2.5      0.57   2.5e+03      64      74 ..     276     286 ..     221     303 .. 0.48

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 9e-05
     DUF3446  19 ellslvsglvgvan.......ppsspss..sssssssssssssspslscsva..aqqsselehiYsaaPtYs 79 
                 +l+ ++s lv +a        p+ sp+    +s+s++ss  ++++++ cs+       s++++i  a P Y+
  KOO24541.1  86 SLIAILSVLVIMAVviafaigPALSPALdpCASTSAQSSCRAEGAEVVCSCRgpVVAVSDASSILRALPIYT 157
                 577777755554444456665444444343445555556666677776666411567899999999999995 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 0.57
     DUF3446  64 qsselehiYsa 74 
                    + ++++sa
  KOO24541.1 276 RAISSSQAHSA 286
                 11122222222 PP

>> SPC12  Microsomal signal peptidase 12 kDa subunit (SPC12)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.2      0.74   3.3e+03      36      53 ..      22      39 ..      20      41 .. 0.81
   2 ?    2.2   0.7     0.045     2e+02      12      28 ..      90     106 ..      85     111 .. 0.82
   3 ?    7.4   0.0     0.001       4.5      16      68 ..     336     390 ..     329     393 .. 0.88

  Alignments for each domain:
  == domain 1  score: -1.8 bits;  conditional E-value: 0.74
       SPC12 36 ltlyillagvvltllvvv 53
                +++ i ++gv+ t l+vv
  KOO24541.1 22 VAIGIKCFGVATTYLIVV 39
                567788899999999998 PP

  == domain 2  score: 2.2 bits;  conditional E-value: 0.045
       SPC12  12 llqvilvlsaviafivG 28 
                 +l+v++++++viaf++G
  KOO24541.1  90 ILSVLVIMAVVIAFAIG 106
                 67889999999999999 PP

  == domain 3  score: 7.4 bits;  conditional E-value: 0.001
       SPC12  16 ilvlsaviafivGyitqdlkltlyillagvvltllvvvPpWpfY..nrnplkWlk 68 
                 + +l+ ++   +  +++dl ++l +++a+  +++   +P + +Y   r+p  Wl 
  KOO24541.1 336 ATTLFLAVTTSTAMALDDLGIVLSVVGATGSVVVTYLLPGFCYYrlCRQPRSWLR 390
                 567888888999999****************************966799*99986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (415 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       867  (0.0483574); expected 358.6 (0.02)
Passed bias filter:                      499  (0.027832); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.52u 0.29s 00:00:00.81 Elapsed: 00:00:00.43
# Mc/sec: 2890.20
//
Query:       KOO24542.1  [L=392]
Description: putative importin subunit beta-4-like protein, partial [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.1e-10   41.7  15.4    0.00014   22.3   0.9    5.9  5  HEAT_EZ        HEAT-like repeat
      1e-08   34.7   9.9    0.00098   19.2   0.0    5.3  4  HEAT           HEAT repeat
    2.5e-08   34.4   1.4    0.00031   21.3   0.1    3.7  4  Vac14_Fab1_bd  Vacuolar 14 Fab1-binding region
    2.1e-07   31.3   5.0      0.012   16.0   0.0    4.6  4  HEAT_2         HEAT repeats
      6e-07   29.7   0.0    1.1e-06   28.8   0.0    1.4  1  Cnd1           non-SMC mitotic condensation complex subunit 1
     0.0039   17.1   0.0        2.4    8.1   0.0    2.8  3  UME            UME (NUC010) domain
     0.0042   16.7   0.0        0.1   12.1   0.0    2.1  3  CLASP_N        CLASP N terminal
     0.0057   16.2   0.0      0.022   14.3   0.0    1.9  1  Tti2           Tti2 family
  ------ inclusion threshold ------
      0.012   15.7   0.0       0.19   11.9   0.0    2.4  3  ParcG          Parkin co-regulated protein
      0.023   14.3   0.2       0.23   11.0   0.0    2.2  2  DUF3730        Protein of unknown function (DUF3730)
       0.12   11.4   0.1       0.44    9.6   0.0    1.8  2  Dopey_N        Dopey, N-terminal
       0.85    8.7   2.3        7.9    5.5   0.6    2.6  2  MMS19_C        RNAPII transcription regulator C-terminal


Domain annotation for each model (and alignments):
>> HEAT_EZ  HEAT-like repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.3   0.9   9.2e-08   0.00014       5      54 ..     102     152 ..      90     153 .. 0.92
   2 !    8.5   0.0    0.0019       2.9      24      54 ..     163     193 ..     154     194 .. 0.86
   3 !   12.1   0.2   0.00014      0.21      17      54 ..     197     234 ..     193     235 .. 0.90
   4 ?    2.3   0.3      0.17   2.6e+02       3      32 ..     268     298 ..     267     321 .. 0.80
   5 ?    2.3   0.3      0.16   2.4e+02      19      36 ..     322     339 ..     308     348 .. 0.63

  Alignments for each domain:
  == domain 1  score: 22.3 bits;  conditional E-value: 9.2e-08
     HEAT_EZ   5 raAaw.aLGrlaggepellqplvpeilpaLlalLnddsdeVRaaAagaLgn 54 
                 r A++ aL+  a+g++e+ +++++++lp   a+ +d  ++VR+aA++++g 
  KOO24542.1 102 RRAVLvALAMTAEGCAEAYADALDALLPVVFAGCRDGAQPVREAACICIGE 152
                 456666**99***************************************96 PP

  == domain 2  score: 8.5 bits;  conditional E-value: 0.0019
     HEAT_EZ  24 plvpeilpaLlalLnddsdeVRaaAagaLgn 54 
                  + +eilp     Lnd   +V++++++aL+ 
  KOO24542.1 163 SHYQEILPHIFMVLNDATERVKEKSCYALES 193
                 47789************************85 PP

  == domain 3  score: 12.1 bits;  conditional E-value: 0.00014
     HEAT_EZ  17 gepellqplvpeilpaLlalLnddsdeVRaaAagaLgn 54 
                 + ++++ p+++ +l  L alL+d+  ++++ A+ aL++
  KOO24542.1 197 NLGDDIVPFLQPLLERLTALLRDSTRATQEMAISALAA 234
                 5679999****************************986 PP

  == domain 4  score: 2.3 bits;  conditional E-value: 0.17
     HEAT_EZ   3 vRraAawaLGr..laggepellqplvpeilpa 32 
                 +R+ A+ ++G   la +++e ++p++pe+ +a
  KOO24542.1 268 LRARALECIGLmnLA-VGREVCEPVLPEVTAA 298
                 688888888777455.9999999999998775 PP

  == domain 5  score: 2.3 bits;  conditional E-value: 0.16
     HEAT_EZ  19 pellqplvpeilpaLlal 36 
                 +ellq+ v  ilp+Ll++
  KOO24542.1 322 SELLQGDVAPILPQLLPR 339
                 455666666666666643 PP

>> HEAT  HEAT repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.2   0.0   6.6e-07   0.00098       1      28 [.     127     154 ..     127     154 .. 0.96
   2 !   13.7   0.0   3.9e-05     0.058       1      31 []     168     198 ..     168     198 .. 0.95
   3 ?    3.7   0.3     0.063        94       1      28 [.     209     236 ..     209     237 .. 0.92
   4 ?   -0.3   0.0       1.2   1.8e+03      14      25 ..     266     277 ..     253     279 .. 0.73

  Alignments for each domain:
  == domain 1  score: 19.2 bits;  conditional E-value: 6.6e-07
                 HHHHHHHHHT-SSHHHHHHHHHHHHHHH CS
        HEAT   1 llPlllkllsDpspeVReaAakaLgala 28 
                 llP++   ++D +  VReaA+ ++g++a
  KOO24542.1 127 LLPVVFAGCRDGAQPVREAACICIGEFA 154
                 89***********************997 PP

  == domain 2  score: 13.7 bits;  conditional E-value: 3.9e-05
                 HHHHHHHHHT-SSHHHHHHHHHHHHHHHHCS CS
        HEAT   1 llPlllkllsDpspeVReaAakaLgalaevl 31 
                 +lP++   l+D   +V e +++aL  ++e+l
  KOO24542.1 168 ILPHIFMVLNDATERVKEKSCYALESFCENL 198
                 89**9999********************985 PP

  == domain 3  score: 3.7 bits;  conditional E-value: 0.063
                 HHHHHHHHHT-SSHHHHHHHHHHHHHHH CS
        HEAT   1 llPlllkllsDpspeVReaAakaLgala 28 
                 ll  l  ll+D+     e+A+ aL+a+a
  KOO24542.1 209 LLERLTALLRDSTRATQEMAISALAAVA 236
                 6889999*****************9976 PP

  == domain 4  score: -0.3 bits;  conditional E-value: 1.2
                 HHHHHHHHHHHH CS
        HEAT  14 peVReaAakaLg 25 
                    R+ A++++g
  KOO24542.1 266 LTLRARALECIG 277
                 567999****99 PP

>> Vac14_Fab1_bd  Vacuolar 14 Fab1-binding region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.0         8   1.2e+04       7      31 ..       7      31 ..       5      37 .. 0.72
   2 !   21.3   0.1   2.1e-07   0.00031       3      86 ..     102     185 ..     100     187 .. 0.97
   3 !   17.1   0.0   4.3e-06    0.0064       4      83 ..     144     223 ..     143     228 .. 0.92
   4 ?    5.4   0.0     0.019        28       6      32 ..     228     254 ..     223     282 .. 0.77

  Alignments for each domain:
  == domain 1  score: -3.0 bits;  conditional E-value: 8
  Vac14_Fab1_bd  7 ligLaavaialekkikeyleeivkp 31
                   +++L  v  al++k k+++++ + p
     KOO24542.1  7 VVALNVVGCALAHKKKTIVKHKLVP 31
                   6788899999998877777655444 PP

  == domain 2  score: 21.3 bits;  conditional E-value: 2.1e-07
  Vac14_Fab1_bd   3 rkggligLaavaialekkikeyleeivkpvlkcfsDkdsrvRyyacEslyniakvakgevlkllneifdalvklvaDsdesvks 86 
                    r++ l++La +a + +++ ++ l+ ++++v++ ++D  + vR  ac ++   a  ++ +++++ +ei+  ++ ++ D+ e vk+
     KOO24542.1 102 RRAVLVALAMTAEGCAEAYADALDALLPVVFAGCRDGAQPVREAACICIGEFACYLQPDIISHYQEILPHIFMVLNDATERVKE 185
                    7789******************************************************************************97 PP

  == domain 3  score: 17.1 bits;  conditional E-value: 4.3e-06
  Vac14_Fab1_bd   4 kggligLaavaialekkikeyleeivkpvlkcfsDkdsrvRyyacEslyniakvakgevlkllneifdalvklvaDsdes 83 
                    +++ i +   a  l+ +i ++ +ei++ ++ +++D+ +rv+  +c +l   +  + ++++ +l+ +++ l+ l+ Ds + 
     KOO24542.1 144 EAACICIGEFACYLQPDIISHYQEILPHIFMVLNDATERVKEKSCYALESFCENLGDDIVPFLQPLLERLTALLRDSTRA 223
                    6677888889999999999********************************************************99765 PP

  == domain 4  score: 5.4 bits;  conditional E-value: 0.019
  Vac14_Fab1_bd   6 gligLaavaialekkikeyleeivkpv 32 
                    ++ +Laava++ +k+ ++y+e+i + v
     KOO24542.1 228 AISALAAVAMSAGKQFRPYFETIYSLV 254
                    7899*************9999986654 PP

>> HEAT_2  HEAT repeats
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.1   0.8    0.0011       1.7      18      68 ..      67     128 ..      47     131 .. 0.65
   2 !   16.0   0.0   8.1e-06     0.012      10      88 .]     136     233 ..     124     233 .. 0.69
   3 !   12.2   0.1   0.00012      0.18      10      59 ..     177     236 ..     174     264 .. 0.74
   4 ?    1.3   0.1      0.31   4.7e+02      15      40 ..     267     292 ..     254     328 .. 0.72

  Alignments for each domain:
  == domain 1  score: 9.1 bits;  conditional E-value: 0.0011
      HEAT_2  18 raairaLg.rignpealpaLvell.ed...edpavRraaaeaLgaigd......pealpaLk 68 
                 +++ ++Lg +i ++ a+pa+++l+ ++   e+ a Rra+  aL+  ++       +al+aL+
  KOO24542.1  67 AQVFHTLGvSIPSKHAVPAILDLVrQHhcsEHLAWRRAVLVALAMTAEgcaeayADALDALL 128
                 24447777999999**********75444467889********9775333222355666554 PP

  == domain 2  score: 16.0 bits;  conditional E-value: 8.1e-06
      HEAT_2  10 ndpdpevrraairaLgrignp..........ealpaLvellededpavRraaaeaLgai....gd......pealpaLkellddddddvvReaAaeaLa 88 
                 +d  + vr aa++++g+++            e+lp ++ +l+d+ ++v +  + aL  +    gd      +  l+ L++ll+ d+ + ++e A++aLa
  KOO24542.1 136 RDGAQPVREAACICIGEFACYlqpdiishyqEILPHIFMVLNDATERVKEKSCYALESFcenlGDdivpflQPLLERLTALLR-DSTRATQEMAISALA 233
                 467778**********65544444566666699***********************866333354332122335555555554.566666888888885 PP

  == domain 3  score: 12.2 bits;  conditional E-value: 0.00012
      HEAT_2  10 ndpdpevrraairaLgrignp..........ealpaLvellededpavRraaaeaLgaig 59 
                 nd+ + v+ + + aL ++ +            +l+ L+ ll+d+ +a++++a+ aL+a++
  KOO24542.1 177 NDATERVKEKSCYALESFCENlgddivpflqPLLERLTALLRDSTRATQEMAISALAAVA 236
                 777778888888888844333333355555566999*********************986 PP

  == domain 4  score: 1.3 bits;  conditional E-value: 0.31
      HEAT_2  15 evrraairaLgrignpealpaLvell 40 
                  +r++a++++g ++    ++ + ++l
  KOO24542.1 267 TLRARALECIGLMNLAVGREVCEPVL 292
                 68999999999776655555444444 PP

>> Cnd1  non-SMC mitotic condensation complex subunit 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.8   0.0   7.5e-10   1.1e-06      13     126 ..     118     235 ..     105     267 .. 0.87

  Alignments for each domain:
  == domain 1  score: 28.8 bits;  conditional E-value: 7.5e-10
        Cnd1  13 irvpnlveylvepLrkrLkDedpyVRktaaivvakL...ilndmvkekg.flselaklleDenprVvanalaalteiseksenaiynllpdiisklsda 107
                   + + +++l++ + ++++D  + VR+ a i++ +    +++d++   + +l ++   l+D  +rV + + +al+   e+ ++ i+  l+ ++ +l + 
  KOO24542.1 118 EAYADALDALLPVVFAGCRDGAQPVREAACICIGEFacyLQPDIISHYQeILPHIFMVLNDATERVKEKSCYALESFCENLGDDIVPFLQPLLERLTAL 216
                 4577889999**********************************999888******************************889**************99 PP

        Cnd1 108 lnecsewgqitilefLlsy 126
                 l + ++++q   +++L+  
  KOO24542.1 217 LRDSTRATQEMAISALAAV 235
                 9999999999999999875 PP

>> UME  UME (NUC010) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.6   0.0     0.083   1.2e+02      46      85 ..     164     201 ..      82     220 .. 0.72
   2 !    6.7   0.0    0.0046       6.8       7      98 ..     166     254 ..     156     258 .. 0.69
   3 !    8.1   0.0    0.0016       2.4      13      96 ..     253     338 ..     248     344 .. 0.78

  Alignments for each domain:
  == domain 1  score: 2.6 bits;  conditional E-value: 0.083
         UME  46 sissalpqimacLqsaleidelrsaalsvWatllsnlede 85 
                 + + +lp i  +L +a e   ++++++ + +++ +nl d+
  KOO24542.1 164 HYQEILPHIFMVLNDATER--VKEKSCYALESFCENLGDD 201
                 3555566666666666665..6666666667776666554 PP

  == domain 2  score: 6.7 bits;  conditional E-value: 0.0046
         UME   7 lgiltrlseklndshgkkslaekkraikaleeliklagssissalp....qimacLqsaleidelrsaalsvWatllsnlededleplleqtfali 98 
                   il ++  +lnd  ++     k+++ +ale + + +g  i ++l     +++a+L++  +  + ++ a+s+ a+ +     +++ p++e++ +l+
  KOO24542.1 166 QEILPHIFMVLNDATER----VKEKSCYALESFCENLGDDIVPFLQplleRLTALLRDSTR--ATQEMAISALAAVAM-SAGKQFRPYFETIYSLV 254
                 45666666666666655....78889999*********99777777222255555555555..579999999988654.45677888888887766 PP

  == domain 3  score: 8.1 bits;  conditional E-value: 0.0016
         UME  13 lseklndshgkkslaekkraikaleeliklagss.issalpqimacLqsalei..delrsaalsvWatllsnlededleplleqtfa 96 
                 l+++l +  g  +l  + ra+++++ +   +g +  +++lp ++a    +l+   +elr+ +   +a l + l + d+ p+l+q++ 
  KOO24542.1 253 LVRVLLHQTGAGELTLRARALECIGLMNLAVGREvCEPVLPEVTAAALEGLQLdlPELREYTYGFFAQLSELL-QGDVAPILPQLLP 338
                 56666677777789999********666666666799*************999667********999987655.5678888887765 PP

>> CLASP_N  CLASP N terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.3   0.0      0.45   6.7e+02      42     106 ..      81     138 ..      54     154 .. 0.62
   2 !   10.3   0.0   0.00026      0.39      71     131 ..     144     202 ..     112     219 .. 0.88
   3 !   12.1   0.0   6.9e-05       0.1      44     126 ..     158     240 ..     156     254 .. 0.92

  Alignments for each domain:
  == domain 1  score: -0.3 bits;  conditional E-value: 0.45
     CLASP_N  42 daveelleclkqlleailkalssLrttlsstgchllkelaiqlkeqldpmveillptLlkllgdt 106
                 +av+++l++++   +  ++ +++ r ++  ++  + + +a+   ++ld+    llp+ +  + d 
  KOO24542.1  81 HAVPAILDLVR---QHHCSEHLAWRRAVLVALAMTAEGCAEAYADALDA----LLPVVFAGCRDG 138
                 56777777777...67777777777777666666666666665555554....444444444444 PP

  == domain 2  score: 10.3 bits;  conditional E-value: 0.00026
     CLASP_N  71 stgchllkelaiqlkeqldpmveillptLlkllgdtKkiisqnanqalaallsnasfspri 131
                  ++c  + e+a+ l++++ +  + +lp+++ +l d  +++ +++  al+++++n++   +i
  KOO24542.1 144 EAACICIGEFACYLQPDIISHYQEILPHIFMVLNDATERVKEKSCYALESFCENLG--DDI 202
                 5789999999999****999999999****************99999999999987..555 PP

  == domain 3  score: 12.1 bits;  conditional E-value: 6.9e-05
     CLASP_N  44 veelleclkqlleailkalssLrttlsstgchllkelaiqlkeqldpmveillptLlkllgdtKkiisqnanqalaallsnas 126
                 +++++++ +++l  i+  l++    +  ++c  l+ +++ l++++ p+++ ll+ L  ll d    + + a  alaa+  +a+
  KOO24542.1 158 QPDIISHYQEILPHIFMVLNDATERVKEKSCYALESFCENLGDDIVPFLQPLLERLTALLRDSTRATQEMAISALAAVAMSAG 240
                 678999999999***************************************************************99877766 PP

>> Tti2  Tti2 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.3   0.0   1.5e-05     0.022     115     158 ..     160     202 ..     153     222 .. 0.86

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 1.5e-05
        Tti2 115 keieanwplivPpiLnllDdtdtsvKlrGlklLqtlleklessk 158
                 + i ++ + i P i  +l+d +++vK++++  L++++e+l ++ 
  KOO24542.1 160 D-IISHYQEILPHIFMVLNDATERVKEKSCYALESFCENLGDDI 202
                 4.6789999******************************99884 PP

>> ParcG  Parkin co-regulated protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   0.00012      0.19      37     136 ..     125     220 ..     119     232 .. 0.86
   2 ?   -2.7   0.0       3.7   5.5e+03     104     131 ..     229     256 ..     224     265 .. 0.75
   3 ?    0.5   0.0      0.37   5.5e+02      75     149 ..     289     356 ..     267     377 .. 0.67

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 0.00012
       ParcG  37 dalLplffdGlretkhpyrflategikdlleaageekilpvlpklilplkeaLntrdeeviesaLkvlqklvkaseligeaLvpyyrqlLpvlnlfknk 135
                 dalLp++f G r+ ++p r  a  +i ++     +  i++   ++   +   Ln   e+v e++  +l+ +    e  g+ +vp+++ lL  l ++ + 
  KOO24542.1 125 DALLPVVFAGCRDGAQPVREAACICIGEFACY-LQPDIISHYQEILPHIFMVLNDATERVKEKSCYALESF---CENLGDDIVPFLQPLLERLTALLRD 219
                 689************************99988.77788888888888888889999999999999999999...8999************999876655 PP

       ParcG 136 r 136
                 +
  KOO24542.1 220 S 220
                 5 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 3.7
       ParcG 104 lqklvkaseligeaLvpyyrqlLpvlnl 131
                 ++ l  +  + g++  py+ ++   +++
  KOO24542.1 229 ISALAAVAMSAGKQFRPYFETIYSLVRV 256
                 5566677888999999999988777665 PP

  == domain 3  score: 0.5 bits;  conditional E-value: 0.37
       ParcG  75 lpvlpklilplkeaLntrdeeviesaLkvlqklvkaseligeaLvpyyrqlLpvlnlfknkrvnlgdkidyrkkk 149
                  pvlp++  +  e L+   +e  e +     +l   sel      p + qlLp +     ++ +  d+id+ +++
  KOO24542.1 289 EPVLPEVTAAALEGLQLDLPELREYTYGFFAQL---SELLQGDVAPILPQLLPRVL----QSLDFEDCIDFGDDD 356
                 467777777777777777777777777777777...77777778888888888777....555666777774444 PP

>> DUF3730  Protein of unknown function (DUF3730)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.4   0.1      0.13     2e+02      99     152 ..     106     196 ..      66     203 .. 0.62
   2 ?   11.0   0.0   0.00015      0.23      69     119 ..     200     265 ..     196     305 .. 0.72

  Alignments for each domain:
  == domain 1  score: 1.4 bits;  conditional E-value: 0.13
     DUF3730  99 laslAaslrdickhrPdqnged..................................LvdaysavL....vetesqvseaqalglelleaLcs 152
                 l++lA++  ++ +  +d+  ++                                  ++++y+ +L        ++++ ++  ++ +le+ c+
  KOO24542.1 106 LVALAMTAEGCAEAYADA-LDAllpvvfagcrdgaqpvreaacicigefacylqpdIISHYQEILphifMVLNDATERVKEKSCYALESFCE 196
                 555555544444444444.2223444444444444455555555555555555555788888888777655566666777777777777776 PP

  == domain 2  score: 11.0 bits;  conditional E-value: 0.00015
     DUF3730  69 drvfpfLrpfllfs..lskssssafardlieslaslAas..............lrdickhrPdqnge 119
                 d+++pfL+p+l+    l ++s+ a ++  i++la++A+s              l++++ h+  + ge
  KOO24542.1 200 DDIVPFLQPLLERLtaLLRDSTRATQEMAISALAAVAMSagkqfrpyfetiysLVRVLLHQTGA-GE 265
                 6799********98998899999999999**********9999999999999988888888777.44 PP

>> Dopey_N  Dopey, N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   0.0   0.00029      0.44      96     171 ..     167     244 ..     149     260 .. 0.85
   2 ?   -2.0   0.0         1   1.5e+03     107     167 ..     263     324 ..     249     329 .. 0.79

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 0.00029
     Dopey_N  96 lylpGLlpllsyaslsvkpqlleliekyllpLgekLrpalkglilslLpGLeeensevfertlklleklkekvge..k 171
                   lp ++ +l+ a+ +vk +    +e++  +Lg+++ p+l++l+  l   L + +   +e +++ l  +  + g+  +
  KOO24542.1 167 EILPHIFMVLNDATERVKEKSCYALESFCENLGDDIVPFLQPLLERLTALLRDSTRATQEMAISALAAVAMSAGKqfR 244
                 557889999*******************************************************99999998888442 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 1
     Dopey_N 107 yaslsvkpqlleliekyllpLg.ekLrpalkglilslLpGLeeensevfertlklleklkek 167
                  + l+++   le i  + l +g e  +p+l+ + ++ L GL+ +  e+ e t+  + +l+e 
  KOO24542.1 263 AGELTLRARALECIGLMNLAVGrEVCEPVLPEVTAAALEGLQLDLPELREYTYGFFAQLSEL 324
                 56778888888888888899998888999999999999999988888888888777777765 PP

>> MMS19_C  RNAPII transcription regulator C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.7   0.0     0.071   1.1e+02     330     415 ..     165     249 ..     159     259 .. 0.75
   2 ?    5.5   0.6    0.0053       7.9     368     387 ..     329     348 ..     287     350 .. 0.92

  Alignments for each domain:
  == domain 1  score: 1.7 bits;  conditional E-value: 0.071
     MMS19_C 330 FstvlpklvegfkssdsetkenyLvALshllkhvPkslllpeLptLlPlLlqaLdlpdaevkastLetlksileespslvsehlss 415
                 ++++lp ++   +++++  ke   +AL + ++++  ++ +p+L+ Ll  L   L  ++++ +  +++ l+++++++ + + ++ ++
  KOO24542.1 165 YQEILPHIFMVLNDATERVKEKSCYALESFCENLGDDI-VPFLQPLLERLTALLRDSTRATQEMAISALAAVAMSAGKQFRPYFET 249
                 56778888888888888888888888888888888886.58888888888888888888888888888888888776666664444 PP

  == domain 2  score: 5.5 bits;  conditional E-value: 0.0053
     MMS19_C 368 llpeLptLlPlLlqaLdlpd 387
                 + p Lp+LlP +lq+Ld +d
  KOO24542.1 329 VAPILPQLLPRVLQSLDFED 348
                 5788*************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (392 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       551  (0.0307323); expected 358.6 (0.02)
Passed bias filter:                      479  (0.0267165); expected 358.6 (0.02)
Passed Vit filter:                        51  (0.00284455); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.64u 0.29s 00:00:00.93 Elapsed: 00:00:00.47
# Mc/sec: 2527.81
//
Query:       KOO24543.1  [L=124]
Description: hypothetical protein Ctob_002627 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (124 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       275  (0.0153383); expected 358.6 (0.02)
Passed bias filter:                      251  (0.0139997); expected 358.6 (0.02)
Passed Vit filter:                        11  (0.000613531); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.23s 00:00:00.59 Elapsed: 00:00:00.39
# Mc/sec: 959.67
//
Query:       KOO24544.1  [L=467]
Description: hypothetical protein Ctob_002628 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    8.2e-11   42.2   3.3    0.00071   20.0   0.0    3.7  3  Agenet    Agenet domain
  ------ inclusion threshold ------
      0.067   13.3   0.0         12    6.0   0.0    2.5  3  LysM      LysM domain


Domain annotation for each model (and alignments):
>> Agenet  Agenet domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.0   0.0   6.9e-07    0.0062       1      37 [.      25      56 ..      25      69 .. 0.87
   2 ?    3.2   0.9     0.014   1.3e+02       1      41 [.     298     335 ..     298     350 .. 0.80
   3 !   20.0   0.0   7.9e-08   0.00071       1      60 [.     379     441 ..     379     442 .. 0.81

  Alignments for each domain:
  == domain 1  score: 17.0 bits;  conditional E-value: 6.9e-07
      Agenet  1 GdkVEvlsdeegfrGaWfrAtilkvkegdkylVeYdd 37
                Gd VE+       +G+W+++++  + + + +lV+Y+ 
  KOO24544.1 25 GDLVEAMYS----DGCWVPGKVMAT-RARHVLVQYEK 56
                899999988....999*********.99*******98 PP

  == domain 2  score: 3.2 bits;  conditional E-value: 0.014
      Agenet   1 GdkVEvlsdeegfrGaWfrAtilkvkegdkylVeYddlddd 41 
                 G++VEv    ++ r  W +  +    +++++lV  d   d+
  KOO24544.1 298 GSEVEVEVG-DKERARWRSSEVRALLSSGRFLVCVDG--DE 335
                 788888844.445678*********9999****9998..33 PP

  == domain 3  score: 20.0 bits;  conditional E-value: 7.9e-08
      Agenet   1 GdkVEvlsdeegfrGaWfrAtilkvkegdkylVeYddlddddgskpleE...wvdasdiR.Plp 60 
                 G  VE+   +  +rG W+ +t++++ + + ++V+  ++++++  +  e+   +v++s++R P p
  KOO24544.1 379 GAVVEAQLADVLYRGGWWDGTVEEC-GLGGAVVRTHTFSKSERAGSTEQlavTVPWSQLRlPAP 441
                 567999999999*************.999********555555555444555********8877 PP

>> LysM  LysM domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.5   0.0    0.0041        37       6      36 ..      76     111 ..      75     119 .. 0.81
   2 ?    6.0   0.0    0.0014        12       7      44 .]     128     170 ..     126     170 .. 0.93
   3 ?   -3.5   0.0       1.3   1.1e+04       3       9 ..     181     187 ..     181     187 .. 0.84

  Alignments for each domain:
  == domain 1  score: 4.5 bits;  conditional E-value: 0.0041
                 T--HHHHHHHCTCHHHHHHHHC.....TCSSCGG-- CS
        LysM   6 GDTLwsIAkrygitveklleaN.....nlsspdkif 36 
                 ++T  ++A+  g++v+ ll++N     +l  + k++
  KOO24544.1  76 NETPRDVARTTGVPVSVLLALNlnrypGLVATSKLR 111
                 689999****************98888888777776 PP

  == domain 2  score: 6.0 bits;  conditional E-value: 0.0014
                 --HHHHHHHCTCHHHHHHHHC.....TCSSCGG--TTEEEEEE CS
        LysM   7 DTLwsIAkrygitveklleaN.....nlsspdkifpGqkLkiP 44 
                 DT   +A r+g ++++ll+ N      l+++  +  G++L++P
  KOO24544.1 128 DTPRIVAERFGRDLDTLLQQNaptvpALQTDSILSEGSVLVLP 170
                 777779************************999*******998 PP

  == domain 3  score: -3.5 bits;  conditional E-value: 1.3
                 E-TT--H CS
        LysM   3 VkkGDTL 9  
                 V  GDTL
  KOO24544.1 181 VSAGDTL 187
                 678***8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (467 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       271  (0.0151152); expected 358.6 (0.02)
Passed bias filter:                      242  (0.0134977); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.47u 0.21s 00:00:00.68 Elapsed: 00:00:00.38
# Mc/sec: 3691.94
//
Query:       KOO24545.1  [L=181]
Description: peptidyl-prolyl cis-trans isomerase cyp19-4-like protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.3e-39  135.2   0.0    2.6e-39  135.1   0.0    1.0  1  Pro_isomerase  Cyclophilin type peptidyl-prolyl cis-trans iso


Domain annotation for each model (and alignments):
>> Pro_isomerase  Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  135.1   0.0   1.4e-43   2.6e-39       2     157 ..      14     177 ..      13     178 .. 0.86

  Alignments for each domain:
  == domain 1  score: 135.1 bits;  conditional E-value: 1.4e-43
  Pro_isomerase   2 vdietss..kGrivieLfadk..aPktvenFlklvkeg...........fYdgttFhRvikgfmvqgGdptgktsageqekkggesiraipdEits 82 
                    +die+++  +Gr++++Lf+    +Pkt+enF++l+ +g           +Y+g++FhR+i+gfm+qgGd+t++t +g + +  g    +++dE  +
     KOO24545.1  14 FDIEIGGapMGRMEFNLFGGMggVPKTAENFRALC-TGekgvgksgvplHYKGSIFHRIIPGFMCQGGDFTTGTGRGGE-SIYG---GKFADEG-F 103
                    7889977889********864339***********.566899999************************9998553332.3333...4799**9.8 PP

  Pro_isomerase  83 klkh.krGalamartgkepnsagsqFfItlkeaphldgkytvFGkVveGmdvvekiek.vetdeerpkknvkivsae 157
                     + h  +G+l+ma++g  p+s+gsqFf+t+ ++phldg+++vFG++ +G++++ ++e+ ++++  +p k   iv+++
     KOO24545.1 104 LIAHaGPGLLSMANSG--PDSNGSQFFVTTVPCPHLDGRHVVFGELASGFQTLTALEAnGSQS-GAPDKVAIIVDCG 177
                    999999*********8..8**************************************955444.4888878888876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (181 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       169  (0.00942607); expected 358.6 (0.02)
Passed bias filter:                      149  (0.00831056); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.19s 00:00:00.57 Elapsed: 00:00:00.35
# Mc/sec: 1531.16
//
Query:       KOO24546.1  [L=106]
Description: hypothetical protein Ctob_002637 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (106 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       196  (0.010932); expected 358.6 (0.02)
Passed bias filter:                      168  (0.00937029); expected 358.6 (0.02)
Passed Vit filter:                         8  (0.000446204); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.26s 00:00:00.61 Elapsed: 00:00:00.41
# Mc/sec: 770.00
//
Query:       KOO24547.1  [L=126]
Description: hypothetical protein Ctob_002636, partial [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (126 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       249  (0.0138881); expected 358.6 (0.02)
Passed bias filter:                      145  (0.00808746); expected 358.6 (0.02)
Passed Vit filter:                         7  (0.000390429); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.22s 00:00:00.60 Elapsed: 00:00:00.40
# Mc/sec: 950.18
//
Query:       KOO24548.1  [L=523]
Description: exostosin-like glycosyltransferase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.5e-40  137.2   4.1    5.3e-37  127.6   4.1    2.6  1  Exostosin  Exostosin family
  ------ inclusion threshold ------
        4.2    6.5   5.3          6    6.0   5.3    1.1  1  DUF4106    Protein of unknown function (DUF4106)


Domain annotation for each model (and alignments):
>> Exostosin  Exostosin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  127.6   4.1     6e-41   5.3e-37       3     299 ..      23     425 ..      21     426 .. 0.86

  Alignments for each domain:
  == domain 1  score: 127.6 bits;  conditional E-value: 6e-41
   Exostosin   3 kglkVYvydlpskfnedlleecrelp.................etswysaeqfllesllhsrveeyvrtsdpaeAdlffvpfyaslsenrhllnsalqd 84 
                 ++  VYvy+l    +  l+ ++r +                  ++  y++e++l+e ll s+    +rt d a Ad+f+vp+y ++ +  + ++   + 
  KOO24548.1  23 RRPSVYVYELWDHTS--LILQYRGYAgycvhrtfdelnrtvfnDNYAYTIETALHEWLLRSP----HRTVDGASADFFYVPSYLACTILPVYDWVGPGP 115
                 577899998777766..444444444688999999999999999999***************....*********************999888877777 PP

   Exostosin  85 rre...........lqrellewlksqlpyWnrs..gGr.dHfivlsrptwafrrtakdvdwgsamlv.........nltslfseeqyr........... 149
                 + +           +  ++l+++++++p++n+s  +Gr dH++ + ++++a+    + + + + +++          ++s+ +                
  KOO24548.1 116 FATgfpmrpvtamrMALDALQQIRQRWPFFNASvaSGRvDHLWLFPHDEGACWA--PLELFEHSIVLthwgrmdakPTSSSRY----Vpdnweahwtld 208
                 7668999*****99999**************97557878***************..888888888887888755544444444....255559999*** PP

   Exostosin 150 ...........................................................pgkdvvvPypspfhp............eisqwqaaspsnr 177
                                                                             +k   +P+ +++ +            + s+  ++  s+ 
  KOO24548.1 209 qrapagqawsfpparqggsraligthpcyrpdrdlvipvfapvakwqatpwlrtatekpAEKPTEMPAAQQPAQhgaqqhravlgtAQSARPPPWDSQP 307
                 ******************************999999999999999999999999999963333666666666556677788844444444445555689 PP

   Exostosin 178 RktllvFagel...rrrsesgkireklleeckgdpdadickgkqctkgrskedylellassrFClvppGdsptsrrlfdallagCIPViisdqielPfe 273
                 R+tl++F+g+l   +  ++ + ir++l + +kg p ++ ++   ++       y ++l +s FC+vppG   +s r+ da++ gCIPVii d++++Pfe
  KOO24548.1 308 RTTLAYFSGNLaqnEPLKYGRGIRQRLYKAFKGVPGWHLENKVGSR-------YSNDLSTSYFCIVPPGGDGWSSRVDDAVRHGCIPVIIMDNVHMPFE 399
                 ***********98877899************************987.......9***************999*************************** PP

   Exostosin 274 dvldwrefsvfvpekdvpelksilrs 299
                  vl+++ f+++++ekdv++l  +lrs
  KOO24548.1 400 TVLNYSAFAIRIAEKDVEQLDGLLRS 425
                 ********************999997 PP

>> DUF4106  Protein of unknown function (DUF4106)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.0   5.3   0.00067         6     198     253 ..     266     307 ..     233     333 .. 0.60

  Alignments for each domain:
  == domain 1  score: 6.0 bits;  conditional E-value: 0.00067
     DUF4106 198 rhapkptqqptvqnpaqqptqqptvqqpaqvqqpaqqpppqpaqqptvqnpaqqqp 253
                 + a kpt+ p+ q+paq  +qq      +   q a +ppp  +           qp
  KOO24548.1 266 KPAEKPTEMPAAQQPAQHGAQQHRAVLGT--AQSA-RPPPWDS-----------QP 307
                 23344444444444444444443322222..1222.3444333...........22 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (523 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       334  (0.018629); expected 358.6 (0.02)
Passed bias filter:                      277  (0.0154498); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.50u 0.29s 00:00:00.79 Elapsed: 00:00:00.44
# Mc/sec: 3607.19
//
Query:       KOO24549.1  [L=606]
Description: hypothetical protein Ctob_002634 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.7e-10   40.0   0.0    2.1e-05   23.2   0.0    2.1  2  CD36      CD36 family


Domain annotation for each model (and alignments):
>> CD36  CD36 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.6   0.0   4.8e-07    0.0086      56     233 ..      11     218 ..       7     238 .. 0.59
   2 !   23.2   0.0   1.2e-09   2.1e-05     289     462 ..     340     525 ..     317     529 .. 0.72

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 4.8e-07
                 XXXXXXXXXXX..XX.XXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXXXXXXXX..XXXXXXXXXXXXX......X..XXXXXX.... CS
        CD36  56 lFNvtNpeevl..gggakpkveeiGPYvYrevrekenvtfnedngtvsYrqrrtyefdpekSvgdsleddtitvpNipll.alklae..saaskl.... 145
                 + NvtN++e++  +   kp++  + P ++r   e  + +  +d +  +++++ +++ + +   +    +  i++ + +l+ ++ +    +a++++    
  KOO24549.1  11 FLNVTNAYELQtvSPPPKPIFAAV-PITFRFSAESFDAQLTDDAE--TFSEKTHFHLEFSDPAD---AQLSIVTAHSILAgLIRFCGgeQAIREMrdpn 103
                 44*********8888899***988.***************98666..56666555555444444...36699****99996555555774444444444 PP

                 ........XXXXXXXXXXXXXXXXX.......X.XXXXXXXXXXXXX.XXXXXXXXXXXXXXXXX..........XXXXXXXXXXX.XXXXXXXXXXXX CS
        CD36 146 ........sslllklllsallksle.......s.klfvtktvkelLfdGyedpllklakklleklk.........kppsdkfGlfy.kkngtddgeytv 218
                         +  + +++ +a +++l        +  +fv++t++el++ G + +l ++a +ll             ++ +++ +l +    g+ +g+  +
  KOO24549.1 104 sshplafaCVPVYDMV-EADTQQLRldgttpnNvGIFVRRTISELIY-GHTSSLPAAALQLLGGSRitefhmgeyNDYPTRASLEEaIATGSATGT--M 198
                 3322223322222222.2222222255555555589***********.****98666655555543222223332222222222221122222222..1 PP

                 .....XXXXXXXXXXXXXXX CS
        CD36 219 .....etGkddisklgkiek 233
                      +tGk+++s +g  + 
  KOO24549.1 199 fetltFTGKNNPSLIGIQHG 218
                 22233578888877776555 PP

  == domain 2  score: 23.2 bits;  conditional E-value: 1.2e-09
                 XXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXX......X...XXXXXXXXXXXX.XXXXXXXXXXXXXXXXXXXXX....XXXXXXXX...XXXXXXXX CS
        CD36 289 evkgipayrytlpkkvfdnpsen.penecfckkkkkgec...lpsGlldlskck.ygaPvvlSlPHFyqadpelle....aveGlnPd...kekhetyl 375
                  ++ + +++y++++++ + + +  p++++ c    +g+c   +  G      +k    P +l+lP+F +a+ +l+e    +  G  P    + +    l
  KOO24549.1 340 IINSLYVVKYSMDESAGALTVDGvPDEAGACAA--TGRCdfgMLWGPNVWAGYKtIMYPYALTLPYFGKASHSLSEsatfETLGGTPLaydEPTMRHEL 436
                 57889999*****99999777777*******96..68896553333333333333245*****************965332235446422245556668 PP

                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXX..XXTTH.HHHHHHHHHHT..TTTTS---HHHHHHHHTTSTTHHHHHHHHHHHHHHHHTHH CS
        CD36 376 diepttGipleaakrlQiNllvkpvegisl..lknlpenvilPlfwlee..eaelddelasllkkqllllpklleilqyvlialglvllll 462
                 +iep tG +l+ +  +++N++  + ++++   ++n+ ++  +P++      + +l+   a+l   ++  +p ++  + y++ ++g++l+++
  KOO24549.1 437 YIEPLTGKVLKYNMPFMFNIVGFDRTTFDGplFANVFNSSTFPIVFPLHveSNRLTAGAAALN--AIASAPVMAYLAMYLCTIVGIALFIW 525
                 9*******************9998888887788888878888886533322224555555544..67778888888999999999999987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (606 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       445  (0.0248201); expected 358.6 (0.02)
Passed bias filter:                      373  (0.0208043); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.55u 0.25s 00:00:00.80 Elapsed: 00:00:00.40
# Mc/sec: 4528.69
//
Query:       KOO24550.1  [L=315]
Description: hypothetical protein Ctob_002633 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (315 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       385  (0.0214736); expected 358.6 (0.02)
Passed bias filter:                      309  (0.0172346); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.44u 0.22s 00:00:00.66 Elapsed: 00:00:00.39
# Mc/sec: 2418.89
//
Query:       KOO24551.1  [L=317]
Description: hypothetical protein Ctob_002632 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (317 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       784  (0.043728); expected 358.6 (0.02)
Passed bias filter:                      526  (0.0293379); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.48u 0.25s 00:00:00.73 Elapsed: 00:00:00.41
# Mc/sec: 2300.76
//
Query:       KOO24552.1  [L=443]
Description: ATP-dependent RNA helicase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    8.5e-33  113.6   0.1    2.2e-32  112.3   0.1    1.6  2  DEAD         DEAD/DEAH box helicase
    5.9e-28   97.4   0.0    7.2e-27   93.9   0.0    2.4  2  Helicase_C   Helicase conserved C-terminal domain
    2.4e-06   27.7   0.1    5.6e-06   26.5   0.0    1.6  2  ResIII       Type III restriction enzyme, res subunit
     0.0007   20.0   0.1     0.0094   16.3   0.1    2.3  2  AAA_19       AAA domain
  ------ inclusion threshold ------
      0.048   13.6   0.0       0.14   12.1   0.0    1.8  1  TFIID_30kDa  Transcription initiation factor TFIID 23-30kDa s


Domain annotation for each model (and alignments):
>> DEAD  DEAD/DEAH box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  112.3   0.1     6e-36   2.2e-32       2     174 ..      72     237 ..      71     238 .. 0.86
   2 ?   -2.5   0.0         1   3.6e+03      53     104 ..     298     349 ..     284     352 .. 0.55

  Alignments for each domain:
  == domain 1  score: 112.3 bits;  conditional E-value: 6e-36
                 HHHHHHHHHHHTTCEEEEEESTTSSHHHHHHHHHHHHHHHSTTSTS-EEEEEESSHHHHHHHHHHHHHHTTTST....SEEEEEETTSSHHHHHHHHHT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx....xxxxxxxxxxxxxxxxxxxxx RF
        DEAD   2 diQaeaiplilgggdvlvaaeTGsGKTlaflipvlqivyetkgktgpkalivePtreLaeqtlnnlkkfkkyid....lrvlliiggvaardqlskldn 96 
                 +iQa ++p i  ++++l++ + G+GKT++f++ +l+i  +  + ++p+al+++PtreLa+q+++++ +++ky+     ++v++i++++++  ++ +   
  KOO24552.1  72 KIQAISLPKIWANRNLLAQSHNGTGKTACFVLGMLRIA-D-ARVKKPQALCICPTRELAKQIAEETHRMGKYMLlesgMTVKCILKEERY--EKGAT-M 165
                 79*********************************777.4.69****************************9552344555555554333..22222.3 PP

                 TCSEEEEEHHHHHHHHHCTSSHCTTEEEEEEETHHHHHHTTTHHHHHHHHHHSHHHCTTSTTTSEEEEEESSBS.HHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxx RF
        DEAD  97 gvdivvgtpgrlddllstgklnlsqvrflVlDEadrlldqgfsdfinrilnqlpqitcdgklqrqvivlSATlp.kdvk 174
                   +iv+gtpg++  l+s + l++  ++++VlDEad++l  g +d  +ri + +       ++q q++++SAT++ ++vk
  KOO24552.1 166 PDQIVIGTPGKIWTLISLRVLDTAAIKVFVLDEADEMLTAGHGDNTKRIRKVM-------PKQLQTLFFSATWKeETVK 237
                 489**************9******************************98888.......67788********966654 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 1
                 EESSHHHHHHHHHHHHHHTTTSTSEEEEEETTSSHHHHHHHH....HTTCSEEEEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx....xxxxxxxxxx RF
        DEAD  53 vePtreLaeqtlnnlkkfkkyidlrvlliiggvaardqlskl....dngvdivvgt 104
                  + tr  +e   ++l+  ++    +v++i g+ ++r   ++l    d+  +i+++t
  KOO24552.1 298 FVNTRDSVESLTRRLTADGH----SVSSIHGKMEERARDKALkdfhDAASKILIAT 349
                 55555555555555544444....45566665555555555522222447777776 PP

>> Helicase_C  Helicase conserved C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.4   0.0      0.23   8.1e+02      11      50 ..     110     148 ..     100     163 .. 0.67
   2 !   93.9   0.0     2e-30   7.2e-27       4     111 .]     281     393 ..     278     393 .. 0.89

  Alignments for each domain:
  == domain 1  score: 0.4 bits;  conditional E-value: 0.23
                 HHTTTTSEEEEEESSHHHHHHHHHHHHHT.TSTEEEESTTS CS
  Helicase_C  11 kleeeggkilifvntidrlekvklllekk.gikvavlhgel 50 
                 + ++++ ++l++++t++ ++  ++ +e++   k+  l + +
  KOO24552.1 110 DARVKKPQALCICPTRELAK--QIAEETHrMGKYMLLESGM 148
                 678899999******99885..3333333334444455544 PP

  == domain 2  score: 93.9 bits;  conditional E-value: 2e-30
                 HHHHHHHHHTTTTSEEEEEESSHHHHHH.HHHHHHHTTSTEEEESTTSTHHHHHHHHHHHHTTSSSEEEESGGGTSSSTSTTESEEEESSSS......S CS
  Helicase_C   4 eallellkleeeggkilifvntidrlek.vklllekkgikvavlhgelpqnereeileqfnkgesdvLiatdvaerGidipkvnlVinfdlp......r 95 
                 e+l ell +  + g+i++fvnt+d++e+ ++ l +  g +v  +hg+++ + r+++l++f +  s++Liat+v++rGid+p v+lV+++d+p      +
  KOO24552.1 281 ERLGELL-SLIDAGQIIVFVNTRDSVESlTRRL-TADGHSVSSIHGKMEERARDKALKDFHDAASKILIATNVLSRGIDVPAVTLVVQYDMPvmhggmY 377
                 5566666.56689*************7654444.4559*********************************************************9999 PP

                 SHHHHHHHHTTSSSTT CS
  Helicase_C  96 nvtsyiqriGRtgRag 111
                 +++++ +r+GRtgR+g
  KOO24552.1 378 DPETFLHRVGRTGRFG 393
                 9*************86 PP

>> ResIII  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.5   0.0   1.5e-09   5.6e-06      23     170 ..      83     232 ..      34     233 .. 0.82
   2 ?   -2.4   0.0       1.2   4.1e+03      56      81 ..     294     319 ..     260     349 .. 0.54

  Alignments for each domain:
  == domain 1  score: 26.5 bits;  conditional E-value: 1.5e-09
                 TTSEEEEEESTTSTHHHHHHHHHHHH-S......-EEEEESSHHHHHHHHHHGGGGTGG........GEEEESSS-B--.......-SEEEEEHHHHHH CS
      ResIII  23 rdkrglikmaTGtGKTlvaaklierllkkgkee.kflflvprkslleqtleefkkflseayke....igkkvsgdkkkakekdstnkkilvttiqslda 116
                  ++++l +   GtGKT + +  + r++ ++ ++ ++l ++p+++l +q  ee  ++ +    e    ++ +++++++++  +++   +i++ t  ++  
  KOO24552.1  83 ANRNLLAQSHNGTGKTACFVLGMLRIADARVKKpQALCICPTRELAKQIAEETHRMGKYMLLEsgmtVKCILKEERYEK--GATMPDQIVIGTPGKIWT 179
                 5678889999*********999999999988778******************999999888887665445555555555..99999************* PP

                 TH........HHHTTT-SEEEEETGGGTTS....TTTHHHHHT-.--SEEEEEESS-S CS
      ResIII 117 dseeeeeeseellrdrfdviiiDEaHrlgak...kswreilekf.keavllglTATpe 170
                  +         l+  +++v++ DEa  +  +   ++ ++i + + k+   l ++AT +
  KOO24552.1 180 LI-----SLRVLDTAAIKVFVLDEADEMLTAghgDNTKRIRKVMpKQLQTLFFSATWK 232
                 99.....78889999999*******998886555588888666634577799999976 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 1.2
                 -EEEEESSHHHHHHHHHHGGGGTGG. CS
      ResIII  56 kflflvprkslleqtleefkkflsea 81 
                 +++++v++++ +e + ++++   ++ 
  KOO24552.1 294 QIIVFVNTRDSVESLTRRLTADGHSV 319
                 45555555555555555554444443 PP

>> AAA_19  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.1   2.6e-06    0.0094      15      69 ..      89     147 ..      75     267 .. 0.80
   2 ?    1.4   0.0       0.1   3.6e+02      41      84 ..     291     332 ..     277     419 .. 0.80

  Alignments for each domain:
  == domain 1  score: 16.3 bits;  conditional E-value: 2.6e-06
      AAA_19  15 vtaGpGtGKTrvlkhivallvelggvkpeeillvaftgrAakelrerlaalgae.....a 69 
                      GtGKT + +  +  + +++ vk  + l++++t+  ak+++e+++ +g+       
  KOO24552.1  89 AQSHNGTGKTACFVLGMLRIADAR-VKKPQALCICPTRELAKQIAEETHRMGKYmllesG 147
                 55567*******999988888887.56689******************888765555553 PP

  == domain 2  score: 1.4 bits;  conditional E-value: 0.1
      AAA_19  41 kpeeillvaftgrAakelrerlaalgaeatTiHrlalldfddll 84 
                 ++ +i++   t+ +++ l+ rl+a g++ + iH+   ++   + 
  KOO24552.1 291 DAGQIIVFVNTRDSVESLTRRLTADGHSVSSIHGK--MEERARD 332
                 4578999999************9999999999976..3333333 PP

>> TFIID_30kDa  Transcription initiation factor TFIID 23-30kDa subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0     4e-05      0.14       5      31 ..     264     290 ..     261     292 .. 0.96

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 4e-05
  TFIID_30kDa   5 DavtayyLekaGletsDprlarlvsLa 31 
                  D+v +yyLe  G++ + +rl  l+sL+
   KOO24552.1 264 DQVKQYYLECNGFKEKEERLGELLSLI 290
                  9************************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (443 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       473  (0.0263818); expected 358.6 (0.02)
Passed bias filter:                      418  (0.0233142); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.50u 0.28s 00:00:00.78 Elapsed: 00:00:00.44
# Mc/sec: 3042.27
//
Query:       KOO24553.1  [L=439]
Description: nima-like pk serine threonine-protein kinase nek1 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
  ------ inclusion threshold ------
       0.15   11.4  15.2       0.25   10.7  15.2    1.3  1  CDC27          DNA polymerase subunit Cdc27
        1.6    8.4   4.6        2.9    7.6   4.6    1.3  1  SH3-RhoG_link  SH3-RhoGEF linking unstructured region


Domain annotation for each model (and alignments):
>> CDC27  DNA polymerase subunit Cdc27
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7  15.2   2.8e-05      0.25     137     272 ..     291     427 ..     280     438 .. 0.69

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 2.8e-05
       CDC27 137 rpplaapaseakektangkkpka....akekaaketssakseskkksaekskdaskettkekaekaasskaaslkkkasaksnimksffkakpaekkkk 231
                 +pp+ a  ++ake++++gk++      +k+ + + ++   ++s ++ +++ ++a k++ ++++   + ++ ++ ++ a+++ +++ s+f+++ a+  ++
  KOO24553.1 291 KPPALAWRKQAKEAAKDGKEEGGsrkgGKSGTGAGSGAERKMSYEERKAAEAAARKAKAAAAKGGGPVDEVERRRRMALEEEELLRSMFDSEEAAGEEE 389
                 45566667788899999986644666555555555666666666666666666666666666667777888999999*****************99998 PP

       CDC27 232 teakeqkveeeseeekekedkeleddsaaeeeeeeekstkk 272
                 + + e++v+    +e++++d+++ed+ a + +ee+e+ + +
  KOO24553.1 390 ADEAEETVNFD--DEEGAHDDAQEDEGA-DMDEENEDEATM 427
                 87777766655..778888888888887.444444443333 PP

>> SH3-RhoG_link  SH3-RhoGEF linking unstructured region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.6   4.6   0.00032       2.9      86     154 ..     329     397 ..     316     415 .. 0.87

  Alignments for each domain:
  == domain 1  score: 7.6 bits;  conditional E-value: 0.00032
  SH3-RhoG_link  86 khkksrdvrksvaagsqkdsddsaatpqdetveervrneglssgtlskssssGmqscGeeegeegadsv 154
                      k s + rk+++a+++k +  +a+        er+r  +l+   l +s      ++Geee +e  ++v
     KOO24553.1 329 ERKMSYEERKAAEAAARKAKAAAAKGGGPVDEVERRRRMALEEEELLRSMFDSEEAAGEEEADEAEETV 397
                    56889999***********99999987776667889999************************998877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (439 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       939  (0.0523733); expected 358.6 (0.02)
Passed bias filter:                      428  (0.0238719); expected 358.6 (0.02)
Passed Vit filter:                        68  (0.00379274); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.57u 0.30s 00:00:00.86 Elapsed: 00:00:00.45
# Mc/sec: 2929.91
//
Query:       KOO24554.1  [L=321]
Description: triose or hexose phosphate phosphate translocator [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      1e-71  241.7   5.0    1.2e-71  241.5   5.0    1.0  1  TPT       Triose-phosphate Transporter family
    8.3e-07   29.3  13.6    1.5e-05   25.2   3.7    2.8  2  EamA      EamA-like transporter family
  ------ inclusion threshold ------
      0.023   13.9   3.0      0.045   13.0   2.9    1.8  1  PUNUT     Purine nucleobase transmembrane transport
      0.043   13.0   3.8        1.8    7.7   0.4    2.4  2  UAA       UAA transporter family
      0.091   13.3   1.9        0.3   11.6   0.1    2.5  2  DUF5489   Family of unknown function (DUF5489)
        0.1   12.8   7.1       0.13   12.5   0.4    3.2  4  Ycf66_N   Ycf66 protein N-terminus


Domain annotation for each model (and alignments):
>> TPT  Triose-phosphate Transporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  241.5   5.0   3.9e-75   1.2e-71       3     289 ..       7     302 ..       5     303 .. 0.95

  Alignments for each domain:
  == domain 1  score: 241.5 bits;  conditional E-value: 3.9e-75
         TPT   3 lgllfllWYllnvvfnilnKkilnvf...pyPltvsavqllvgsvlilvlwal.glkkrpkisseflkailplalvktlghvlavvslskvaVSfthtv 97 
                 l +++++WY+ n+ +ni+nK++ ++    ++ +t +++ql++g  ++++lw + +++k+p ++  +++++ pl+++ +++h  av ++s+ aVSf ++v
  KOO24554.1   7 LITYLTMWYVGNYWYNIYNKNAGKLSggaNFAFTNATMQLVIGCAYAIFLWLApDARKQPTLTLGQFMSLAPLGFFAAVAHGGAVYAMSAGAVSFGQIV 105
                 6789******************9998777999******************************************************************* PP

         TPT  98 KasePiFtvilsrlllgeklsllvylsLlpivgGvalasvtElsFnligfisAlisnltfslrnifsKkllkk.lkd...ldalnlfaiitilslllll 192
                 Ka eP+F++++  ++++++ s+ ++++Llp++gG+a+as++El+F+++++i+A ++n+++++r+  +K+++++ l +    +  n +a++ti + +ll+
  KOO24554.1 106 KAGEPVFAAAVGYFVYKKSESVPKLICLLPVIGGIAIASMQELDFTMASLIAASTANVASAFRGSENKRVMTGeL-SsaiGSGGNSYALTTIWATILLT 203
                 *************************************************************************53.3488899**************** PP

         TPT 193 PvallvegvlktpsllkstkvslkevllllllsgvlfhlynqvaymvL...ervspvthsvantvKrvvvIvlsvlvfknpvsllnaiGtavaivGvfl 288
                 P++++  ++ +  ++l+    s++++  +ll+sgv f+lyn+v++++L   +  s v+hsvant+Kr+vvIv s l f++ + +l+++G+++ai+G+fl
  KOO24554.1 204 PTVFISGEFDRIDEYLALL-RSNSTFRYNLLMSGVTFYLYNEVSTKCLtgkDGLSGVSHSVANTAKRAVVIVGSALAFGEDMGFLKSVGCTIAIAGTFL 301
                 ****999988888888888.5689************************444469********************************************* PP

         TPT 289 Y 289
                 Y
  KOO24554.1 302 Y 302
                 * PP

>> EamA  EamA-like transporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.2   3.7     5e-09   1.5e-05      32     136 ..      40     144 ..      27     145 .. 0.81
   2 !    8.5   2.3   0.00069       2.1      36     135 ..     193     302 ..     179     304 .. 0.68

  Alignments for each domain:
  == domain 1  score: 25.2 bits;  conditional E-value: 5e-09
        EamA  32 tltfvrfliagillliiallkegkl.aklslkdwllllllgllgtvlafllffyalkktsasnaslitslePvftlilsvlllgekltlkqllgivlil 129
                 t ++++++i+ +  +++ l  + ++ + l+l ++ +l+ lg+   ++a++  +ya++ + +s+  ++ + ePvf++  ++++++++ ++ +l+ ++ ++
  KOO24554.1  40 TNATMQLVIGCAYAIFLWLAPDARKqPTLTLGQFMSLAPLGF-FAAVAHGGAVYAMSAGAVSFGQIVKAGEPVFAAAVGYFVYKKSESVPKLICLLPVI 137
                 4445666666555544444444444599*************6.5678889************************************************* PP

        EamA 130 lGvllil 136
                  G+++ +
  KOO24554.1 138 GGIAIAS 144
                 ***9876 PP

  == domain 2  score: 8.5 bits;  conditional E-value: 0.00069
        EamA  36 vrfliagillliiallkegkl......aklslkdwlll.lllgllgtvlafllffyalk...ktsasnaslitslePvftlilsvlllgekltlkqllg 124
                 ++++ a+ill ++ +++++ +      a l+ ++ + + ll++ + + l++ + ++ l+    +s    s++++   +++++ s+l +ge +++++ +g
  KOO24554.1 193 LTTIWATILLTPTVFISGEFDrideylALLRSNSTFRYnLLMSGVTFYLYNEVSTKCLTgkdGLSGVSHSVANTAKRAVVIVGSALAFGEDMGFLKSVG 291
                 4566777777777777777774444444444444444445555455555443333322211134444888999999999******************** PP

        EamA 125 ivlillGvlli 135
                 + ++++G++l 
  KOO24554.1 292 CTIAIAGTFLY 302
                 ********985 PP

>> PUNUT  Purine nucleobase transmembrane transport
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   2.9   1.5e-05     0.045     206     313 ..     194     303 ..      15     308 .. 0.93

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 1.5e-05
       PUNUT 206 lslvatvvcvvGllisGefkelkkeaeeFkkGkslYvlvlvgsavswQvlavGavgLvfl...vSslfsnvistvllpvvsvlavilfrdkfsavkgva 301
                 + + at++++  ++isGef  + +   +    +s++   l++s v++ ++   ++  ++     S++   v +t+  +vv v   ++f ++++  k v 
  KOO24554.1 194 TTIWATILLTPTVFISGEFDRIDEYL-ALLRSNSTFRYNLLMSGVTFYLYNEVSTKCLTGkdgLSGVSHSVANTAKRAVVIVGSALAFGEDMGFLKSVG 291
                 67889*****************8655.556668888999999*****99985555555531336999999***************************** PP

       PUNUT 302 lllailgfasYv 313
                   +ai g   Y+
  KOO24554.1 292 CTIAIAGTFLYA 303
                 *******99886 PP

>> UAA  UAA transporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.7   0.4   0.00061       1.8      55     138 ..      63     147 ..       4     179 .. 0.70
   2 ?    6.4   0.1    0.0015       4.5     260     299 ..     264     303 ..     253     306 .. 0.91

  Alignments for each domain:
  == domain 1  score: 7.7 bits;  conditional E-value: 0.00061
         UAA  55 lkkrkiPlktYvilvalffitsvlnnealkydis...vPvhiifrssklipvmilGililgkrYsllqylsvllltlGviiftllsa 138
                 +k++   l +++ l+ l f   v    a+   +s   v +  i++++  +    +G ++++k+ s+ + +++l +  G+ i+++ ++
  KOO24554.1  63 RKQPTLTLGQFMSLAPLGFFAAVAHGGAVYA-MSagaVSFGQIVKAGEPVFAAAVGYFVYKKSESVPKLICLLPVIGGIAIASM-QE 147
                 5666666666666665555555544443322.321115566799**************************************98.33 PP

  == domain 2  score: 6.4 bits;  conditional E-value: 0.0015
         UAA 260 vltlRKfvslllSillFknpltlqhlvgtllVflglllys 299
                   t+ ++v ++ S l F++ + + + vg  + + g++ly+
  KOO24554.1 264 ANTAKRAVVIVGSALAFGEDMGFLKSVGCTIAIAGTFLYA 303
                 568899********************************98 PP

>> DUF5489  Family of unknown function (DUF5489)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.1    0.0001       0.3      12      47 ..     132     167 ..     124     169 .. 0.93
   2 ?   -0.4   0.1      0.58   1.7e+03      16      37 ..     289     309 ..     267     314 .. 0.57

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 0.0001
     DUF5489  12 glgpvvgviiilammgltykiagkipaiitgiasaf 47 
                  l pv+g i i +m  l + +a  i a  + +asaf
  KOO24554.1 132 CLLPVIGGIAIASMQELDFTMASLIAASTANVASAF 167
                 578********************************9 PP

  == domain 2  score: -0.4 bits;  conditional E-value: 0.58
     DUF5489  16 vvgviiilammg.ltykiagkip 37 
                  vg  i +a  g + y ia  ip
  KOO24554.1 289 SVGCTIAIA--GtFLYAIADSIP 309
                 334333333..314466776666 PP

>> Ycf66_N  Ycf66 protein N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.4   4.2e-05      0.13      35      70 ..      48      84 ..      44      86 .. 0.88
   2 ?   -2.8   0.0       2.4   7.2e+03      52      66 ..      97     111 ..      95     119 .. 0.70
   3 ?   -3.2   0.0       3.2   9.7e+03      31      54 ..     196     219 ..     195     222 .. 0.64
   4 ?    2.8   0.1     0.042   1.3e+02       3      22 ..     290     309 ..     289     312 .. 0.87

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 4.2e-05
     Ycf66_N 35 vgLlygliLlfq.awrldgilllgqlllvalliwfaw 70
                +g  y+++L++    r +++l lgq+++ a l++fa+
  KOO24554.1 48 IGCAYAIFLWLApDARKQPTLTLGQFMSLAPLGFFAA 84
                7888******98356899****************985 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 2.4
     Ycf66_N  52 gilllgqlllvalli 66 
                 g++ +gq++ ++  +
  KOO24554.1  97 GAVSFGQIVKAGEPV 111
                 678899988766544 PP

  == domain 3  score: -3.2 bits;  conditional E-value: 3.2
     Ycf66_N  31 ffsgvgLlygliLlfqawrldgil 54 
                 +++++ L   +++  + +r+d  l
  KOO24554.1 196 IWATILLTPTVFISGEFDRIDEYL 219
                 788887766666666666666655 PP

  == domain 4  score: 2.8 bits;  conditional E-value: 0.042
     Ycf66_N   3 lgivlalaslaLYflrffkP 22 
                 +g ++a+a+  LY+++   P
  KOO24554.1 290 VGCTIAIAGTFLYAIADSIP 309
                 6899**********998777 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (321 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       595  (0.0331865); expected 358.6 (0.02)
Passed bias filter:                      371  (0.0206927); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.48u 0.24s 00:00:00.72 Elapsed: 00:00:00.41
# Mc/sec: 2371.84
//
Query:       KOO24555.1  [L=335]
Description: hypothetical protein Ctob_009190 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.22   11.8   0.3       0.22   11.8   0.3    2.4  3  DIM       DIM protein


Domain annotation for each model (and alignments):
>> DIM  DIM protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   0.0      0.67   1.2e+04      27      32 ..      17      22 ..      17      23 .. 0.85
   2 ?   -1.5   0.2      0.17   3.1e+03      15      24 ..     174     183 ..     172     185 .. 0.81
   3 ?   11.8   0.3   1.2e-05      0.22       2      29 ..     291     322 ..     290     323 .. 0.91

  Alignments for each domain:
  == domain 1  score: -3.4 bits;  conditional E-value: 0.67
         DIM 27 iINGkC 32
                +I G+C
  KOO24555.1 17 YIAGSC 22
                799**9 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 0.17
         DIM  15 alaaanalpG 24 
                 a+ ++na+p 
  KOO24555.1 174 AMMSVNATPA 183
                 8999****85 PP

  == domain 3  score: 11.8 bits;  conditional E-value: 1.2e-05
         DIM   2 kcLsLlaflllll..alaaanal..pGkViIN 29 
                 k+L L+ ++++ +  al+ +n+   +G+V+IN
  KOO24555.1 291 KWLLLSLLVIGTVtwALLYVNPAalGGEVVIN 322
                 8999988999988889*****99889*****9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (335 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       880  (0.0490825); expected 358.6 (0.02)
Passed bias filter:                      376  (0.0209716); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.21s 00:00:00.66 Elapsed: 00:00:00.37
# Mc/sec: 2721.21
//
Query:       KOO24556.1  [L=489]
Description: conserved unknown protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      2e-13   50.5   0.0      6e-13   48.9   0.0    1.7  1  Asp              Eukaryotic aspartyl protease
     0.0024   18.4   0.1        1.6    9.4   0.0    2.5  2  Asp_protease_2   Aspartyl protease
  ------ inclusion threshold ------
      0.095   13.3   0.0         15    6.2   0.0    2.5  2  gag-asp_proteas  gag-polyprotein putative aspartyl protease
       0.11   12.2   0.0       0.43   10.4   0.0    1.9  2  TAXi_C           Xylanase inhibitor C-terminal


Domain annotation for each model (and alignments):
>> Asp  Eukaryotic aspartyl protease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.9   0.0   1.3e-16     6e-13       2     314 ..      19     368 ..      18     369 .. 0.79

  Alignments for each domain:
  == domain 1  score: 48.9 bits;  conditional E-value: 1.3e-16
                 EEEEEEETT..TTEEEEEEEETT--SEEEEBTT...ESTSHCHHTSS-B-GGG-TT-E...EEEEEEEEECTTSEEEEEEEE..EEEEETTEEEEEEEE CS
                 xxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxx RF
         Asp   2 YfgeisiGt..peqkftvifDTGSsdlWVpssk...ckkssackshstydpskSstyk...kngkslsisYGdgsvsGflsq..dtvkvggltvknqef 90 
                 Y+ +i iG     q+ +v++DTGSs l V ++    c  ++  +  s+y++s+S t     + ++ +si+    +++G++    d+v++ g+  ++   
  KOO24556.1  19 YLLPIAIGGggRAQEVNVMLDTGSSFLMVSDVArgaCGDNEPATYGSCYNASASVTGVadpRGSEGFSIAIDGRQLDGSFTSwlDEVALPGVARPGGSP 117
                 7777888651167999**************999888998999999*********99873323456789998767****997555********9888766 PP

                 EEEEEESSHHHTTSS............SSEEEE-S-GGGSCGGSCCHHHHHHHTTSSSSSEEEEEE-STTSSEEEEEESSEEGGGEEEEEEEEEESS.T CS
                 xxxxxxxxxxxxxxx............xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.x RF
         Asp  91 geatkepgstflaak............fdGiLGlgfkeisveeatpvfdnlvsqglikepvfsvylnreeeeggeivfGgvDeskykGsltyvpvts.k 176
                 + a  + g +  +                G+LGl+ + i++     ++d  +s       +f++ ln  +   + + +G+ + s   G l++   ++  
  KOO24556.1 118 IVAVAQVGAVGNNGIgprgvlpyfwadAAGVLGLSPQPIASR--PHPWDAYLST---FGSAFTLDLN--STGRSRLGLGAPNRSWAVGALQWSATQNsP 209
                 66666655443333345555566665599******9988884..4579997776...5789*****9..677899******************999967 PP

                 SSTEEEEEEEEETTEEE.EEEEEEEEEEETTCSSEEEEHHHHHHHHHHHTTEEEETTCEEEEETTG.....GGGSEEEEEEE..TTEEEEEEGGGGEEE CS
                 xxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.....xxxxxxxxxxx..xxxxxxxxxxxxxxx RF
         Asp 177 gywqielesvtvggktv.lcssgcqailDtGTsllalptsivekiakaigakksesegeyvvdCds.....lsslpdisfti..ggakitvpvselvlk 267
                  + ++el +v+v g  +  +s    a++DtG+s l lp+   e++ + ++ ++  s+ + +  C         slp +sf +  +  ++++p+++l+l 
  KOO24556.1 210 SFHRLELFDVSVCGVGLlGTSAFWPALVDTGASCLGLPEPLFESLFTWLSVASCPSQFTPTSTCRIpasvpAASLPVLSFRLsqNAPQLQLPLEALLLP 308
                 7899********9999856777789*************************99999977777778651111345677778887877889*********98 PP

                 ESS..STTSEEEESE.........EECCTSSSEEEEHHHHTTEEEEEETTT..TEEEEEE CS
                 xxx..xxxxxxxxxx.........xxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxx RF
         Asp 268 eee..seesqCilgl.........vseeegdlwiLGdvFlrsayvvfdldn..nrvglAe 314
                 +++  ++++ Cil l            +  ++++LG + l+ +   f++++  +rvglA+
  KOO24556.1 309 SDRadGSRKLCILRLpnpgarvspWGAPWPQSVVLGTMALQPFVAAFEMRAtrRRVGLAA 368
                 765114559******999998655555667899***************765125799885 PP

>> Asp_protease_2  Aspartyl protease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.4   0.0   0.00035       1.6       2      24 ..      22      48 ..      21      57 .. 0.83
   2 !    6.4   0.0    0.0032        14      12      31 ..     235     254 ..     221     268 .. 0.89

  Alignments for each domain:
  == domain 1  score: 9.4 bits;  conditional E-value: 0.00035
  Asp_protease_2  2 pvtinG....kpvrfllDTGasttlis 24
                    p+ i+G    ++v+++lDTG+s +++s
      KOO24556.1 22 PIAIGGggraQEVNVMLDTGSSFLMVS 48
                    56676667878***********99987 PP

  == domain 2  score: 6.4 bits;  conditional E-value: 0.0032
  Asp_protease_2  12 fllDTGasttlispelaekl 31 
                     +l+DTGas + +++ l e+l
      KOO24556.1 235 ALVDTGASCLGLPEPLFESL 254
                     89**********99999887 PP

>> gag-asp_proteas  gag-polyprotein putative aspartyl protease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.2   0.0    0.0034        15       8      27 ..      32      51 ..      27      77 .. 0.80
   2 ?    4.4   0.0     0.013        57      12      31 ..     235     254 ..     228     272 .. 0.85

  Alignments for each domain:
  == domain 1  score: 6.2 bits;  conditional E-value: 0.0034
                     EEEEEEEETT-SS-EEEHHH CS
  gag-asp_proteas  8 kpvkflvDTGAsstiiseel 27
                     ++v++++DTG s  ++s+  
       KOO24556.1 32 QEVNVMLDTGSSFLMVSDVA 51
                     689**********9999765 PP

  == domain 2  score: 4.4 bits;  conditional E-value: 0.013
                      EEEETT-SS-EEEHHHHHHT CS
  gag-asp_proteas  12 flvDTGAsstiiseelaerl 31 
                      +lvDTGAs   ++e l e l
       KOO24556.1 235 ALVDTGASCLGLPEPLFESL 254
                      89******998888877765 PP

>> TAXi_C  Xylanase inhibitor C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.0         1   4.5e+03      29      44 ..      32      47 ..      29      50 .. 0.79
   2 ?   10.4   0.0   9.5e-05      0.43      35     156 ..     237     361 ..     214     364 .. 0.78

  Alignments for each domain:
  == domain 1  score: -2.7 bits;  conditional E-value: 1
                ---SEEE-SSSSSEEE CS
      TAXi_C 29 gsggtvlstgtpytvl 44
                ++ +++l+tg+++ ++
  KOO24556.1 32 QEVNVMLDTGSSFLMV 47
                67899*****999765 PP

  == domain 2  score: 10.4 bits;  conditional E-value: 9.5e-05
                 E-SSSSSEEE-HHHHHHHHHHHHHTS-GG...GE---TT-S-EEETTS......-S----EEEEESSS-.EEEE-GGGGEEE-SSS....EEEE-EEE- CS
      TAXi_C  35 lstgtpytvletdvYralvkafakelaaekvkrvaavkpfelCynsselgstragpavPtitlvlegga.ewtisgenllvkvegg....vvClafves 128
                 ++tg ++  l+++ ++ l ++++ +   +      + +p ++C   ++       +++P ++++l ++a +++++ e ll+  ++      +C+  + +
  KOO24556.1 237 VDTGASCLGLPEPLFESLFTWLSVASCPS------QFTPTSTCRIPAS----VPAASLPVLSFRLSQNApQLQLPLEALLLPSDRAdgsrKLCILRLPN 325
                 55555555555555555555554433333......3345555544444....47889**********999***********999655788*****9999 PP

                 ........-S--SSSEEE-HHHHBTS-EEEETTTTE CS
      TAXi_C 129 ........gvagesavviGglqlednllvFDleksr 156
                         g+++ ++vv+G++ l+ ++  F + ++r
  KOO24556.1 326 pgarvspwGAPWPQSVVLGTMALQPFVAAFEMRATR 361
                 9**************************999988765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (489 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       296  (0.0165096); expected 358.6 (0.02)
Passed bias filter:                      235  (0.0131073); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.54u 0.22s 00:00:00.76 Elapsed: 00:00:00.41
# Mc/sec: 3582.50
//
Query:       KOO24557.1  [L=412]
Description: glycine cleavage system protein t [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      1e-81  274.1   0.0    1.3e-81  273.8   0.0    1.1  1  GCV_T     Aminomethyltransferase folate-binding domain
    7.3e-21   73.9   0.1    1.7e-20   72.7   0.1    1.6  1  GCV_T_C   Glycine cleavage T-protein C-terminal barrel domain
    0.00051   20.2   0.0    0.00087   19.5   0.0    1.5  1  SoxG      Sarcosine oxidase, gamma subunit family


Domain annotation for each model (and alignments):
>> GCV_T  Aminomethyltransferase folate-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  273.8   0.0   2.1e-85   1.3e-81       1     257 []      38     296 ..      38     296 .. 0.96

  Alignments for each domain:
  == domain 1  score: 273.8 bits;  conditional E-value: 2.1e-85
       GCV_T   1 lydrhkalgakfvefagwemPvqYasesikaehlavreaaglfDvShmgkievsGpdaaalLqrlltndisklkpgkatytlllnedGgvidDlivarl 99 
                 l++ h+alg k+v+f+gw+mPvqY  ++i ++h+++r++aglfDvShm  + ++G+d++++++++++ ++s+l++g +++t++ ne+Gg+idD+iv++ 
  KOO24557.1  38 LHATHVALGGKMVPFGGWDMPVQY-PDGIVKSHEHTRTSAGLFDVSHMLGVIIRGKDRVKFMESITPCHVSALAEGFGSLTVIPNEKGGIIDDCIVTNA 135
                 799*********************.************************************************************************** PP

       GCV_T 100 dedefllvvnaankekdlawlekaaek...kdldvevedvteelallalqGPkarevlskllgadlselkffsfaevelaggkkvlvsRtgytGedGfe 195
                 + +++++v+na++++ dl +++++ +k   ++ dv++e ++e+ ++lalqGPka+evl+kl+++dl+++ f ++a++ +ag k+++v+R+gytGedGfe
  KOO24557.1 136 G-NHLYMVINAGHETIDLPHIKQYMDKfvaTGGDVSLETLSEN-GILALQGPKAAEVLQKLVSVDLTQMVFGQAASMAVAGIKDCYVARSGYTGEDGFE 232
                 *.7*****************9999888999*********8886.************************************6666*************** PP

       GCV_T 196 iyipa.....eeaeelweaLleagkeegvkpaGlgArdtlRlEaglrlyghdldeettPleaglgwa 257
                 i +p+         +lwe+ +   +++ v p+GlgArd+lRlEagl+lyg+dld++t+P ea+l w+
  KOO24557.1 233 IAVPKgsgatHGVVKLWETFM---ADKAVLPIGLGARDSLRLEAGLCLYGNDLDPTTSPGEASLVWV 296
                 *****8777677788999996...6777************************************996 PP

>> GCV_T_C  Glycine cleavage T-protein C-terminal barrel domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   72.7   0.1   2.9e-24   1.7e-20       1      79 [.     324     401 ..     324     401 .. 0.94

  Alignments for each domain:
  == domain 1  score: 72.7 bits;  conditional E-value: 2.9e-24
     GCV_T_C   1 Rrlvglelddgapllrggepil.rdgevvGhvTSgaysptlgksialAyvkaelaklgtevevevrgkrvpaevvkkpfy 79 
                 R+ vg++++ g + +r+ge++l +dg +vG vTSg +sp l++ i++Ayv+++l+k gte++v +r+k+ p++++k+pf+
  KOO24557.1 324 RKRVGFTIK-G-APARQGEAVLnADGVQVGVVTSGSHSPILKQGIGMAYVPPALSKDGTELYVMLRKKKQPITITKMPFV 401
                 89******5.5.246*******55*******************************************************6 PP

>> SoxG  Sarcosine oxidase, gamma subunit family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.5   0.0   1.5e-07   0.00087      37     129 ..     135     235 ..      74     242 .. 0.77

  Alignments for each domain:
  == domain 1  score: 19.5 bits;  conditional E-value: 1.5e-07
        SoxG  37 laPdeflvid.qegkaalaalaealae.lasvvdlS....hgrvlisisGakaeavlakltaiDlsadaFpvGaaaatilgkv.evvil...rtgsdaf 125
                  +   ++vi+ + +  +l ++ + + +  a++ d+S      +  + ++G+ka +vl+kl+++Dl    F  G+aa+ +++ +  + +     tg+d f
  KOO24557.1 135 AGNHLYMVINaGHETIDLPHIKQYMDKfVATGGDVSletlSENGILALQGPKAAEVLQKLVSVDLTQMVF--GQAASMAVAGIkDCYVArsgYTGEDGF 231
                 55556777775445555777778787777788888832223455799*******************9998..77777666554157777445689**** PP

        SoxG 126 evlv 129
                 e+ v
  KOO24557.1 232 EIAV 235
                 *998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (412 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       342  (0.0190752); expected 358.6 (0.02)
Passed bias filter:                      323  (0.0180155); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.46u 0.27s 00:00:00.73 Elapsed: 00:00:00.41
# Mc/sec: 3025.98
//
Query:       KOO24558.1  [L=511]
Description: phosphate permease [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    9.3e-91  304.4  23.3    1.1e-90  304.2  23.3    1.0  1  PHO4      Phosphate transporter family


Domain annotation for each model (and alignments):
>> PHO4  Phosphate transporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  304.2  23.3     6e-95   1.1e-90       1     336 [.       5     498 ..       5     499 .. 0.92

  Alignments for each domain:
  == domain 1  score: 304.2 bits;  conditional E-value: 6e-95
        PHO4   1 iGanDvanafatsvgskaltlrqAvilaaifeflGavllGaeVaetirkgivdvelf..........dpselmlgmlaallgaavwlllatvlglPvSt 89 
                 iG nD+ana++++vgs+a+ lr+A+++ ++ e lGa+llGa V++ti+kgi dv+            + +++++gm+aal+ga ++l+lat+ +lPvSt
  KOO24558.1   5 IGGNDAANAWSSTVGSGAIPLRKALLIGGLGEWLGATLLGAGVSKTISKGISDVQDPncwacgycdsKMMIYAVGMMAALIGASAFLMLATISKLPVST 103
                 79**************************************************8885557899998544444449************************* PP

        PHO4  90 thslvGaliGaalaaeggeavkw....kklvkivlswvlsPllggiiaallfllvkrlilvk.eklknalralpvlvlvtiailalsilfkge...... 177
                 th++vG+++G++l+ +gg+ ++w    k+l+ i++swv+sPll+g++ a+++ ++++ i++  +++k+a+ alp+l+ +t+++++++ ++k +      
  KOO24558.1 104 THAIVGGVVGMTLYGAGGNCLTWgpwpKGLGAIIASWVISPLLSGVVCAIVYKCTDFGIIRAkQPVKRAIVALPFLYGITTFVVVALTVLKSNatkald 202
                 **************8778*****877769*****************************99767**************************9977788888 PP

        PHO4 178 ................................................................................................... 177
                                                                                                                    
  KOO24558.1 203 pgimfgislgfgsfvgvvvrvlvvpkvradvdalypgtrgvprggaftaiesanagtdgirlaertvaqlatvdepavevsrelnearqseqrgggnge 301
                 88888888888899999999999999999999999999999999999999999999999**************************************** PP

        PHO4 178 ................................skkddeeteklfkflqvvsaalvsfahGanDvanaiGpllaalisiyk....a.sk.evplwvlllg 238
                                                  ++++++  ++f+ l+v+ a l sfahGanD+ana++ +  al+++y+    a s  e+ +wv+ l 
  KOO24558.1 302 gagngegagdresatqhaktlatsshhsggivRTHQEKASVHIFRNLLVFVAFLESFAHGANDTANATSAF-SALLHAYDsglyAcSFiETEWWVMSLA 399
                 *****************99999998877766433777888889****************************.77889999887536777899******* PP

        PHO4 239 glaialGlllgGkrviktvGekitkkltpsrGfaaelaaaltvllaskl..glPvStThvlvgavvGvGlakkresavnwklvrnivlaWvlTlpvsal 335
                 g+ +alG+ ++G+rvi+t+Ge++t+ ++   Gf++ela+ ltv+la+ +  g+PvS+Th++vgavv+vGl+ + e++v+w+l+++i++aW lT+p+++ 
  KOO24558.1 400 GAFVALGVNVMGYRVIQTLGEDLTA-IDFQVGFSIELATVLTVVLATCYgpGMPVSSTHCKVGAVVAVGLMTGTEAGVKWSLFGKIFFAWALTVPLAGG 497
                 ************************5.********************9886689********************************************97 PP

        PHO4 336 l 336
                 +
  KOO24558.1 498 V 498
                 6 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (511 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       814  (0.0454013); expected 358.6 (0.02)
Passed bias filter:                      404  (0.0225333); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.50u 0.22s 00:00:00.72 Elapsed: 00:00:00.38
# Mc/sec: 3981.66
//
Query:       KOO24559.1  [L=702]
Description: hypothetical protein Ctob_009192 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
       0.11   12.4   0.1       0.23   11.3   0.1    1.5  1  Sde2_N_Ubi  Silencing defective 2 N-terminal ubiquitin domain


Domain annotation for each model (and alignments):
>> Sde2_N_Ubi  Silencing defective 2 N-terminal ubiquitin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.1   1.3e-05      0.23     113     148 ..     387     422 ..     371     439 .. 0.81

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 1.3e-05
  Sde2_N_Ubi 113 ndscRdldGrRLrtvkeakalaeylaekperekkek 148
                 + + +++ G RLrtv +akal      k++++  e+
  KOO24559.1 387 ERAKKEIGGSRLRTVMKAKALHVNQTLKAAMDDVER 422
                 567889***********************9996655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (702 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       442  (0.0246528); expected 358.6 (0.02)
Passed bias filter:                      305  (0.0170115); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.56u 0.24s 00:00:00.80 Elapsed: 00:00:00.39
# Mc/sec: 5449.84
//
Query:       KOO24560.1  [L=534]
Description: anthranilate synthase component 2 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.8e-83  279.0   0.0    7.7e-83  277.5   0.0    1.7  2  IGPS      Indole-3-glycerol phosphate synthase
    3.2e-46  157.6   0.2    3.6e-41  141.1   0.0    2.2  2  PRAI      N-(5'phosphoribosyl)anthranilate (PRA) isomerase


Domain annotation for each model (and alignments):
>> IGPS  Indole-3-glycerol phosphate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  277.5   0.0   8.6e-87   7.7e-83       1     254 []      12     273 ..      12     273 .. 0.98
   2 ?   -2.0   0.0      0.18   1.6e+03     139     178 ..     382     420 ..     380     427 .. 0.77

  Alignments for each domain:
  == domain 1  score: 277.5 bits;  conditional E-value: 8.6e-87
                 HHHCHHHHHHHHHHHHCCS-GGCCCCG..-SS-SS-HHHHCHCHTTS-EEEEEE-SEETTTEESBSS--HHHHHHHHTTT.-SEEEEE--CCCC---CC CS
        IGPS   1 lekivaekkeevaeakkrqsladleaavklakpkrsfaeaLresekklaliaEvKkaSPskgliredfdpaeiAkkyeeagAsaiSVLteekyFqGsle 99 
                 l+kiva+++++va+a ++++ a+l+a++ ++ p+ +f  +Lr  +  la++aE KkaSPskg i++ +d++++A +y+ agA +iSVLte+ +F+Gsl 
  KOO24560.1  12 LDKIVAQRRIDVAAAMAAVPEAELRARIASRAPANDFRATLRA-AAPLAVLAEFKKASPSKGDIAAGLDAPRQALAYALAGACTISVLTEPTWFKGSLA 109
                 79****************************************9.999**************************************************** PP

                 HHHHHHHH-SS-EEE.......ES---SHHHHHHHHHCT-SEEEEECCCS-HHHHHHHHHHHCCTT-EEEEEESSHHHHHHHHHTT-SEEEEESEETTT CS
        IGPS 100 dLrevrqavslpvlr.......KdFiideyqieearalgadaiLLivkvledeeleelaeaakslglevLvEvhdeeeleralklgakiiGvNnRnLkt 191
                 dL++vr+a++  +l        KdF+idey++ eara+gad+ LLiv++l+ eel +l++a++ lg+e+LvEv++e+e+++al++ga +iGvNnRnL+t
  KOO24560.1 110 DLENVRSALEGATLSpgvcalrKDFLIDEYMLLEARAHGADTALLIVAILTPEELVRLMAASRALGMEPLVEVNTEAEMQIALDAGAAVIGVNNRNLHT 208
                 **********999988888999***************************************************************************** PP

                 TEE-CHHHHHHCHCC-..TTSEEEEESSS-SHHHHHHHCCTT-SEEEESHHHHC-TTHHHHHHHH CS
        IGPS 192 levdlntteeLaklvp..kdvllvaeSGiktredveklkeegvnafLvGeslmrqedvekairel 254
                 +evd++tt +La+++p  +dv l a+SG++tr+d+ +l+++g+ ++LvGeslmr+++  + +r+l
  KOO24560.1 209 FEVDMGTTGRLAAMIPehADVQLLALSGVATRQDALDLAATGACGVLVGESLMRAPSPGALVRSL 273
                 ****************7667***********************************9999988875 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 0.18
                 CCCS-HHHHHHHHHHHCCTT-EEEEEESSHHHHHHHHHTT CS
        IGPS 139 vkvledeeleelaeaakslglevLvEvhdeeeleralklg 178
                 v v+ ++++ e+ ++a+++gl+ L+  h +e  + a +l+
  KOO24560.1 382 VGVFVNATADEMNATAERVGLD-LIQLHGAEGWAMASQLN 420
                 56777888999**********9.67788877777777766 PP

>> PRAI  N-(5'phosphoribosyl)anthranilate (PRA) isomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.5   0.0   2.6e-06     0.023       2      49 ..     284     330 ..     283     337 .. 0.94
   2 !  141.1   0.0     4e-45   3.6e-41      49     193 ..     379     522 ..     364     523 .. 0.91

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 2.6e-06
                 CE----SHHHHHHHHHHTSSEEEEE--TTBTTB--HHHHHHHCCCS-- CS
        PRAI   2 kicgltrasdvkaavkagadelglifaesskrevseeqaqellekvpa 49 
                 k+cg+++++ +  a+++gad lg+ifa+s kr v+e +aq+++ +v++
  KOO24560.1 284 KVCGVRDPESARVAAESGADLLGMIFAPS-KRRVTEAEAQAIVAAVRT 330
                 89**************************9.************999885 PP

  == domain 2  score: 141.1 bits;  conditional E-value: 4e-45
                 -EEEEEESSS-HHHHHHHHHHCTECEEEE-CGG.-HHHHHHHHHHS-TTSEEEEEEE-SSS--S-SSTT-..SEEEEESSS-SSSXXXXGGGGTTSXX. CS
        PRAI  49 aklVGVfvNqpieevlriaqelgldvvQLHGdedeqeyeellktelpvikalkvaesvdevkearradhv..dllllDsgaGGtGelldwsliskllks 145
                 + +VGVfvN++++e+ + a+ +gld++QLHG e +     + + + p i+ +++++ v+ ++ +++ +    +++llDs+ GGtG++++w +  ++ ++
  KOO24560.1 379 PLTVGVFVNATADEMNATAERVGLDLIQLHGAEGWA---MASQLNRPAIRVVHMDDTVNAADVCAQLQGGlaSAVLLDSKGGGTGTTFNWAVGCEVHAQ 474
                 349******************************444...4444447*************8888888887657*************************99 PP

                 TTEEEESSXXTTTHHHHHT.TXXSEEEEXGGGEEETEEXHHHHHHHHH CS
        PRAI 146 lkviLAGGLtpeNvaeaiklegvlgvDvssGVEtnGvkDlekirkfvq 193
                 +++iLAGGLtp Nv+ea++  ++  vDvssG+Et+GvkD ekir+fv 
  KOO24560.1 475 VPFILAGGLTPLNVEEAVRQVRPWCVDVSSGIETDGVKDHEKIRAFVS 522
                 **********************************************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (534 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       464  (0.0258799); expected 358.6 (0.02)
Passed bias filter:                      352  (0.019633); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.52u 0.23s 00:00:00.75 Elapsed: 00:00:00.38
# Mc/sec: 4219.02
//
Query:       KOO24561.1  [L=818]
Description: multi-sensor hybrid histidine kinase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    3.1e-15   56.7   0.2    6.3e-15   55.7   0.2    1.5  1  HATPase_c     Histidine kinase-, DNA gyrase B-, and HSP90-lik
    6.3e-15   55.3   0.0    1.5e-14   54.1   0.0    1.7  1  Response_reg  Response regulator receiver domain
     0.0045   16.8   0.0     0.0083   15.9   0.0    1.4  1  HATPase_c_3   Histidine kinase-, DNA gyrase B-, and HSP90-lik


Domain annotation for each model (and alignments):
>> HATPase_c  Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.7   0.2   1.1e-18   6.3e-15       5     108 ..     500     610 ..     496     614 .. 0.86

  Alignments for each domain:
  == domain 1  score: 55.7 bits;  conditional E-value: 1.1e-18
                 HHHHHHHHHHHHHHHHHSTTTEEEEEEEE......EETEEEEEEEESSSSSTTHHHTGTCSTTCH..HCSTCHTSTSSSHHHHHHHHHHHHTTTEEEEE CS
   HATPase_c   5 rLrqiisnlvdNavkfatkageieveika......seddlvisveDnGiGipkedlkklfekfsq..ddstkrggggtGlGlsivkklvelmgGeiwve 95 
                  L +++ nl++N++kf t++g+++v+         ++++++++v D+G G++k+++++  +++++   ++++++ +g GlGl iv + +e +gG+++++
  KOO24561.1 500 ILVRALLNLISNSLKF-TDGGHVTVHTCLlsglsaTDVRVRVEVVDTGYGMTKDEIERARQAYVSgvREGRDNRASGLGLGLPIVISSIESVGGSFQIN 597
                 68999***********.999999996554544433459*******************9999999998677777789***********9999******** PP

                 EETTTEEEEEEEE CS
   HATPase_c  96 sepgrGttftftl 108
                 s+ g+Gt+  +++
  KOO24561.1 598 SRAGEGTRCSIEM 610
                 *******988766 PP

>> Response_reg  Response regulator receiver domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.1   0.0   2.5e-18   1.5e-14       1     109 [.     643     759 ..     643     762 .. 0.91

  Alignments for each domain:
  == domain 1  score: 54.1 bits;  conditional E-value: 2.5e-18
                   EEEESSSHHHHHHHHHHHHHTTEEEEEEESSHHHHHHHHHHHH..ESEEEEESSCSSSEHHHHHHHHHHCT.......TTSEEEEEESSTSHHHHHH CS
  Response_reg   1 vlivdDdplvrellrqlleeegyeevaeaedgkealellkeek..vdlillDinmpgmdGlellkeireed.......pelpviiltahseeedave 88 
                   + i+dD +++r + +++le++g  +v   +dg++ le+lk+++   dl l+Di+mp+m G el+   r+ +       + l++ ++t++++++d  +
    KOO24561.1 643 IAIIDDVEMIRLGAADVLENQGH-RVLLENDGESGLEMLKQNAdeLDLALVDIQMPKMRGDELIVLYRQWElaerpgkRRLRIYACTGNATSTDSAA 738
                   78*********************.***************988888******************98777776655557677***************** PP

                   HHHCTESEEEESSG-HHHHHH CS
  Response_reg  89 alkagaddflsKpfdpeeLlk 109
                   +++ag d+++sKp+ p+  ++
    KOO24561.1 739 YMRAGFDGCISKPVYPQTFKA 759
                   *************99987765 PP

>> HATPase_c_3  Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.0   1.4e-06    0.0083       5      94 ..     503     600 ..     499     639 .. 0.67

  Alignments for each domain:
  == domain 1  score: 15.9 bits;  conditional E-value: 1.4e-06
  HATPase_c_3   5 kAlaelvdNsld.Adaenvkievn.....knrgktgeivieDdGkGmseeelknalr.latsskeakrkstslGkkGiGl...klAslslgkkltvit 92 
                   Al+ l+ Nsl   d  +v+++              ++ + D G+Gm+++e+++a + + +  +e     +  +  G+Gl    +++ s+g ++++ +
   KOO24561.1 503 RALLNLISNSLKfTDGGHVTVHTCllsglSATDVRVRVEVVDTGYGMTKDEIERARQaYVSGVRE--GRDNRASGLGLGLpivISSIESVGGSFQINS 598
                  79*********9888888888877555542222348999**************987623444444..3566666678886222356666777777777 PP

  HATPase_c_3  93 kk 94 
                  ++
   KOO24561.1 599 RA 600
                  65 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (818 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       860  (0.047967); expected 358.6 (0.02)
Passed bias filter:                      561  (0.0312901); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.65u 0.24s 00:00:00.89 Elapsed: 00:00:00.41
# Mc/sec: 6020.95
//
Query:       KOO24562.1  [L=4890]
Description: ABC transporter-like protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   5.2e-227  728.1 191.9    2.5e-09   36.8   0.2   61.7 64  Arm              Armadillo/beta-catenin-like repeat
    3.4e-34  113.8   4.7    0.00011   21.9   0.1    9.8 10  EF-hand_6        EF-hand domain
    3.9e-30  101.1   3.0     0.0001   21.5   0.1    8.2  9  EF-hand_1        EF hand
    2.9e-29  101.0  25.7     0.0003   20.8   0.0   18.2 20  Atx10homo_assoc  Spinocerebellar ataxia type 10 protein domai
    6.5e-29  100.2   0.8    8.5e-08   32.5   0.0    5.2  5  EF-hand_7        EF-hand domain pair
    9.4e-27   94.1   9.0    0.00022   20.7   0.0   14.6 13  V-ATPase_H_N     V-ATPase subunit H
    2.1e-21   74.4  14.3    1.2e-05   24.5   0.4    7.4  8  EF-hand_5        EF hand
    1.3e-20   72.9   1.3    2.4e-07   30.5   0.1    6.0  6  EF-hand_8        EF-hand domain pair
    1.4e-15   57.7  18.1       0.15   12.1   0.1   13.8 14  Cnd1             non-SMC mitotic condensation complex subunit
    1.7e-15   57.2  30.7      0.023   14.2   0.3   16.9 19  Arm_2            Armadillo-like
    1.2e-12   48.1   0.0    3.1e-12   46.7   0.0    1.7  1  ABC1             ABC1 family
    2.7e-10   40.1  46.2     0.0065   15.9   0.5   14.1 18  DUF5578          Family of unknown function (DUF5578)
    4.7e-07   28.7  25.7       0.37    9.3   0.0   10.6 11  Adaptin_N        Adaptin N terminal region
    1.2e-06   27.1   0.0        1.1    7.3   0.0    5.1  5  KAP              Kinesin-associated protein (KAP)
      5e-06   26.8 217.1      0.027   14.9   1.3   29.4 35  HEAT_2           HEAT repeats
    0.00047   20.3  12.1         28    4.8   0.0    8.7  9  V-ATPase_H_C     V-ATPase subunit H
     0.0022   18.4   6.5         18    5.8   0.3    9.3  9  RasGEF_N_2       Rapamycin-insensitive companion of mTOR RasG
  ------ inclusion threshold ------
       0.15   11.8  11.4         16    5.3   0.1    7.2  8  MotA_ExbB        MotA/TolQ/ExbB proton channel family
        2.3    8.3   7.5         23    5.1   0.2    5.6  6  TAN              Telomere-length maintenance and DNA damage r


Domain annotation for each model (and alignments):
>> Arm  Armadillo/beta-catenin-like repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.9   0.4   0.00082      0.78       4      40 ..    1742    1778 ..    1741    1779 .. 0.89
   2 !   21.7   0.1   1.5e-07   0.00015       3      36 ..    1783    1816 ..    1781    1818 .. 0.92
   3 !    6.9   0.0    0.0071       6.7       8      39 ..    1829    1860 ..    1825    1862 .. 0.80
   4 ?    2.4   0.1      0.18   1.7e+02       8      40 ..    1871    1901 ..    1866    1902 .. 0.79
   5 !   13.9   0.1   4.5e-05     0.042       7      40 ..    1910    1943 ..    1904    1944 .. 0.90
   6 !   10.6   0.1    0.0005      0.47       3      40 ..    1948    1985 ..    1946    1986 .. 0.85
   7 !   24.4   0.0   2.2e-08   2.1e-05       1      36 [.    1988    2023 ..    1988    2028 .. 0.92
   8 !   21.9   0.0   1.4e-07   0.00013       3      40 ..    2032    2070 ..    2032    2071 .. 0.96
   9 ?    4.4   0.0     0.045        42      16      39 ..    2085    2108 ..    2084    2109 .. 0.94
  10 ?   -2.1   0.1         5   4.7e+03      16      36 ..    2122    2142 ..    2120    2142 .. 0.91
  11 !   11.2   0.2   0.00032       0.3       7      37 ..    2155    2185 ..    2153    2186 .. 0.92
  12 !   17.1   0.0   4.3e-06     0.004       4      40 ..    2192    2228 ..    2190    2229 .. 0.91
  13 !   11.5   0.0   0.00025      0.24       2      40 ..    2232    2273 ..    2231    2274 .. 0.84
  14 !   20.7   0.0   3.3e-07   0.00031       1      40 [.    2275    2314 ..    2275    2315 .. 0.95
  15 !   11.0   0.2   0.00037      0.35       6      36 ..    2322    2353 ..    2318    2358 .. 0.92
  16 ?   -1.5   0.0       3.2   3.1e+03      13      33 ..    2407    2427 ..    2407    2428 .. 0.85
  17 ?    3.7   1.7     0.073        69      29      41 .]    2456    2468 ..    2450    2468 .. 0.89
  18 !   22.1   0.0   1.2e-07   0.00011       2      41 .]    2471    2510 ..    2470    2510 .. 0.96
  19 ?    3.3   0.0     0.094        88       3      23 ..    2514    2535 ..    2511    2545 .. 0.70
  20 !   36.8   0.2   2.7e-12   2.5e-09       1      40 [.    2563    2602 ..    2563    2603 .. 0.96
  21 !   15.0   0.1     2e-05     0.019       2      36 ..    2606    2640 ..    2605    2644 .. 0.94
  22 !   10.9   0.0    0.0004      0.37       2      33 ..    2648    2680 ..    2647    2688 .. 0.73
  23 ?    5.3   0.0     0.023        21       9      33 ..    2738    2762 ..    2737    2765 .. 0.90
  24 !   18.6   0.0   1.4e-06    0.0014       8      41 .]    2779    2812 ..    2775    2812 .. 0.93
  25 !    6.9   0.0    0.0073       6.9       2      22 ..    2814    2834 ..    2813    2840 .. 0.86
  26 !   19.0   0.3   1.1e-06     0.001       4      40 ..    2858    2894 ..    2855    2895 .. 0.90
  27 !   13.7   0.0   5.2e-05     0.049       2      40 ..    2897    2935 ..    2897    2936 .. 0.95
  28 ?    0.5   0.0      0.75   7.1e+02       5      24 ..    3021    3040 ..    3018    3043 .. 0.80
  29 !   25.6   0.1   9.5e-09     9e-06       2      41 .]    3106    3145 ..    3105    3145 .. 0.95
  30 !   20.3   0.0   4.3e-07   0.00041       8      40 ..    3153    3185 ..    3151    3186 .. 0.94
  31 !   28.0   0.1   1.6e-09   1.5e-06       7      40 ..    3218    3251 ..    3216    3252 .. 0.95
  32 !    9.1   0.1    0.0015       1.4       6      40 ..    3258    3292 ..    3253    3293 .. 0.87
  33 !    6.5   0.1    0.0092       8.7      18      41 .]    3307    3330 ..    3304    3330 .. 0.93
  34 !   28.5   0.2   1.2e-09   1.1e-06       5      40 ..    3336    3371 ..    3332    3372 .. 0.90
  35 !   11.3   0.4   0.00029      0.27       2      36 ..    3411    3448 ..    3410    3453 .. 0.84
  36 !    8.0   0.1    0.0031         3       8      41 .]    3461    3494 ..    3456    3494 .. 0.94
  37 ?    3.3   0.0       0.1        95       8      40 ..    3503    3536 ..    3496    3537 .. 0.89
  38 !   24.8   0.1   1.6e-08   1.5e-05       3      37 ..    3546    3580 ..    3544    3584 .. 0.91
  39 !    9.4   0.1    0.0012       1.1      10      40 ..    3595    3626 ..    3588    3627 .. 0.89
  40 !   13.3   0.0   6.7e-05     0.063       1      40 [.    3629    3670 ..    3629    3671 .. 0.95
  41 !   13.4   0.2   6.3e-05     0.059       2      37 ..    3675    3710 ..    3674    3713 .. 0.93
  42 !    7.1   0.0     0.006       5.7       4      26 ..    3756    3778 ..    3753    3780 .. 0.85
  43 ?   -0.5   0.0       1.6   1.5e+03      26      40 ..    3800    3814 ..    3798    3815 .. 0.86
  44 !   18.6   0.1   1.5e-06    0.0014       1      40 [.    3817    3855 ..    3817    3856 .. 0.94
  45 !   21.9   0.0   1.3e-07   0.00013       1      36 [.    3857    3892 ..    3857    3896 .. 0.94
  46 !   10.1   0.1    0.0007      0.66      12      36 ..    3914    3938 ..    3914    3943 .. 0.93
  47 !   10.8   0.0   0.00042      0.39       1      27 [.    3983    4009 ..    3983    4022 .. 0.83
  48 ?    2.4   0.1      0.19   1.8e+02      16      39 ..    4035    4058 ..    4032    4060 .. 0.87
  49 ?   -2.1   0.0       4.9   4.7e+03      16      35 ..    4083    4106 ..    4083    4107 .. 0.86
  50 !    9.8   0.3    0.0009      0.85       5      40 ..    4116    4153 ..    4115    4153 .. 0.95
  51 !   13.3   0.1   6.7e-05     0.063      11      41 .]    4165    4195 ..    4158    4195 .. 0.93
  52 ?   -2.4   0.0       6.2   5.9e+03      11      40 ..    4206    4235 ..    4202    4235 .. 0.60
  53 ?    2.8   0.0      0.14   1.3e+02       5      23 ..    4242    4260 ..    4237    4263 .. 0.77
  54 !    7.1   0.0    0.0061       5.8       7      23 ..    4325    4345 ..    4322    4363 .. 0.64
  55 !   27.2   0.1   2.8e-09   2.6e-06       2      41 .]    4365    4404 ..    4364    4404 .. 0.96
  56 !   25.3   0.1   1.2e-08   1.1e-05       2      41 .]    4407    4446 ..    4406    4446 .. 0.94
  57 ?   -2.5   0.9       6.8   6.4e+03      13      41 .]    4455    4483 ..    4453    4483 .. 0.85
  58 !   10.1   0.0    0.0007      0.66       1      22 [.    4485    4506 ..    4485    4529 .. 0.84
  59 !   28.3   0.1   1.3e-09   1.3e-06       1      41 []    4530    4570 ..    4530    4570 .. 0.97
  60 !   30.2   0.0   3.3e-10   3.1e-07       4      41 .]    4574    4611 ..    4573    4611 .. 0.96
  61 !   18.1   0.1   2.2e-06    0.0021       3      40 ..    4614    4651 ..    4612    4652 .. 0.91
  62 !   23.6   0.0     4e-08   3.8e-05       4      40 ..    4657    4693 ..    4656    4694 .. 0.93
  63 ?    4.4   0.0     0.042        40      12      36 ..    4708    4732 ..    4702    4737 .. 0.83
  64 ?   -0.2   0.0       1.2   1.2e+03       7      20 ..    4744    4757 ..    4743    4761 .. 0.90

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.00082
                  HHHHHHHTTHHHHHHHHTTTSSHHHHHHHHHHHHHHT CS
         Arm    4 nkdavieaGavppLvrLLssedeevqeeAawALsNLa 40  
                  n   v  a av+pLv+LLss+    qe Aa++L+ La
  KOO24562.1 1742 NQPDVLAAKAVEPLVKLLSSGTACSQESAAATLGVLA 1778
                  556688899************************9886 PP

  == domain 2  score: 21.7 bits;  conditional E-value: 1.5e-07
                  HHHHHHHHTTHHHHHHHHTTTSSHHHHHHHHHHH CS
         Arm    3 enkdavieaGavppLvrLLssedeevqeeAawAL 36  
                  +  +a++ aG++ pLv+LL+ ++ +vqe++a+AL
  KOO24562.1 1783 DTQEAIVAAGGIGPLVNLLKMGSSKVQEQVASAL 1816
                  55789****************************9 PP

  == domain 3  score: 6.9 bits;  conditional E-value: 0.0071
                  HHHTTHHHHHHHHTTTSSHHHHHHHHHHHHHH CS
         Arm    8 vieaGavppLvrLLssedeevqeeAawALsNL 39  
                  +i+aGa+ppLv+  + ++   q  Aa AL+N 
  KOO24562.1 1829 IIKAGAIPPLVAIVKGGSGAAQSFAAQALANA 1860
                  89**********99977777777777777765 PP

  == domain 4  score: 2.4 bits;  conditional E-value: 0.18
                  HHHTTHHHHHHHHTTTSSHHHHHHHHHHHHHHT CS
         Arm    8 vieaGavppLvrLLssedeevqeeAawALsNLa 40  
                  + +aG +p L++LL +++   q++Aa+AL+ La
  KOO24562.1 1871 IASAGSIPLLLSLLGTGKA--QKPAATALAKLA 1901
                  778999********97765..788888887665 PP

  == domain 5  score: 13.9 bits;  conditional E-value: 4.5e-05
                  HHHHTTHHHHHHHHTTTSSHHHHHHHHHHHHHHT CS
         Arm    7 avieaGavppLvrLLssedeevqeeAawALsNLa 40  
                  ++ eaG++ pL++LL+  d + q +Aa AL+ +a
  KOO24562.1 1910 EIAEAGGIAPLLSLLNGIDMDAQVAAAEALAEIA 1943
                  678****************************998 PP

  == domain 6  score: 10.6 bits;  conditional E-value: 0.0005
                  HHHHHHHHTTHHHHHHHHTTTSSHHHHHHHHHHHHHHT CS
         Arm    3 enkdavieaGavppLvrLLssedeevqeeAawALsNLa 40  
                  e   a+ +aG+  pL++LLss + + q  + +AL+ L+
  KOO24562.1 1948 ETQAAIAKAGCFGPLLALLSSRSASAQSKSMAALAQLT 1985
                  5668999*************999999998888888877 PP

  == domain 7  score: 24.4 bits;  conditional E-value: 2.2e-08
                  SHHHHHHHHHTTHHHHHHHHTTTSSHHHHHHHHHHH CS
         Arm    1 nsenkdavieaGavppLvrLLssedeevqeeAawAL 36  
                  n +n dav ++G+++p v+LL+s +++v+  Aa+AL
  KOO24562.1 1988 NRDNQDAVARMGGIKPIVQLLESSSTDVTSYAASAL 2023
                  678********************************9 PP

  == domain 8  score: 21.9 bits;  conditional E-value: 1.4e-07
                  HHHHHHHHTTHHHHHHHHTT.TSSHHHHHHHHHHHHHHT CS
         Arm    3 enkdavieaGavppLvrLLs.sedeevqeeAawALsNLa 40  
                  +n ++v+++Gav +L +L++ s de+v+ e+a+A++ L+
  KOO24562.1 2032 PNQKTVVDLGAVGQLGNLIKtSNDERVKAEVAGAIWSLS 2070
                  5899********************************997 PP

  == domain 9  score: 4.4 bits;  conditional E-value: 0.045
                  HHHHHTTTSSHHHHHHHHHHHHHH CS
         Arm   16 pLvrLLssedeevqeeAawALsNL 39  
                  pLv+LL  ++++ +e Aa+AL+ L
  KOO24562.1 2085 PLVTLLGMGSVRAREHAAGALASL 2108
                  9********************866 PP

  == domain 10  score: -2.1 bits;  conditional E-value: 5
                  HHHHHTTTSSHHHHHHHHHHH CS
         Arm   16 pLvrLLssedeevqeeAawAL 36  
                   Lv+LL +++ e qe A+ AL
  KOO24562.1 2122 LLVELLINGNREAQERAVKAL 2142
                  79***************9887 PP

  == domain 11  score: 11.2 bits;  conditional E-value: 0.00032
                  HHHHTTHHHHHHHHTTTSSHHHHHHHHHHHH CS
         Arm    7 avieaGavppLvrLLssedeevqeeAawALs 37  
                  ++ +aG   +Lv+LL+s + e +  A+wALs
  KOO24562.1 2155 VIAQAGNPAQLVALLKSSHLEAKDYALWALS 2185
                  466999999*********************8 PP

  == domain 12  score: 17.1 bits;  conditional E-value: 4.3e-06
                  HHHHHHHTTHHHHHHHHTTTSSHHHHHHHHHHHHHHT CS
         Arm    4 nkdavieaGavppLvrLLssedeevqeeAawALsNLa 40  
                  n   + eaG+v+pL++ Ls+  + ++e+Aa+AL+ La
  KOO24562.1 2192 NQSIISEAGGVQPLIQQLSDARVFIKEQAASALAKLA 2228
                  677788***************************9887 PP

  == domain 13  score: 11.5 bits;  conditional E-value: 0.00025
                  HHHHHHHHHTTHHHHHHHHTT...TSSHHHHHHHHHHHHHHT CS
         Arm    2 senkdavieaGavppLvrLLs...sedeevqeeAawALsNLa 40  
                  +e +  + e+G+++pL++LL+    e+++ +   a AL+NLa
  KOO24562.1 2232 EETRASITECGGIQPLIKLLTlnaKENPMARMYGADALANLA 2273
                  56677888**************98888888888888888887 PP

  == domain 14  score: 20.7 bits;  conditional E-value: 3.3e-07
                  SHHHHHHHHHTTHHHHHHHHTTTSSHHHHHHHHHHHHHHT CS
         Arm    1 nsenkdavieaGavppLvrLLssedeevqeeAawALsNLa 40  
                  +s+ +d++++aG+++pLv  L++e +++++ Aa+AL+ L+
  KOO24562.1 2275 DSDARDEIVSAGGIRPLVLVLEDEAQKTKKYAARALARLS 2314
                  57889*******************************9987 PP

  == domain 15  score: 11.0 bits;  conditional E-value: 0.00037
                  HHHHHTTHHHHHHHHTT.TSSHHHHHHHHHHH CS
         Arm    6 davieaGavppLvrLLs.sedeevqeeAawAL 36  
                   a+ eaGa+  Lv+LL+ +  +e qeeAa+AL
  KOO24562.1 2322 AAIAEAGAIVLLVALLEgTFGPEAQEEAAGAL 2353
                  5788***************************9 PP

  == domain 16  score: -1.5 bits;  conditional E-value: 3.2
                  HHHHHHHHTTTSSHHHHHHHH CS
         Arm   13 avppLvrLLssedeevqeeAa 33  
                  +++ Lv++L++     qe Aa
  KOO24562.1 2407 IIKKLVDMLQDSGAAAQETAA 2427
                  5899******98888888887 PP

  == domain 17  score: 3.7 bits;  conditional E-value: 0.073
                  HHHHHHHHHHHTT CS
         Arm   29 qeeAawALsNLaa 41  
                  qe+Aa+AL+NLa+
  KOO24562.1 2456 QEQAAAALANLAR 2468
                  9**********97 PP

  == domain 18  score: 22.1 bits;  conditional E-value: 1.2e-07
                  HHHHHHHHHTTHHHHHHHHTTTSSHHHHHHHHHHHHHHTT CS
         Arm    2 senkdavieaGavppLvrLLssedeevqeeAawALsNLaa 41  
                  ++n++ +++a+++ pL++ L+s + + +e+A++A+  L++
  KOO24562.1 2471 EDNRKSIVDANGIVPLLDILDSASAKAKENAVGAIKELCR 2510
                  78************************************97 PP

  == domain 19  score: 3.3 bits;  conditional E-value: 0.094
                  HHHHHHHHTTHHHHHHHHTT.T CS
         Arm    3 enkdavieaGavppLvrLLs.s 23  
                   n  +v +aG++p Lv  +   
  KOO24562.1 2514 NNQALVSRAGGIPKLVGVMAgF 2535
                  4677777*********888743 PP

  == domain 20  score: 36.8 bits;  conditional E-value: 2.7e-12
                  SHHHHHHHHHTTHHHHHHHHTTTSSHHHHHHHHHHHHHHT CS
         Arm    1 nsenkdavieaGavppLvrLLssedeevqeeAawALsNLa 40  
                  n +n da+ eaGa++pLv +L s++ ++q +Aa+AL+NLa
  KOO24562.1 2563 NRKNQDAIAEAGAIQPLVGMLGSPSSQMQANAAGALANLA 2602
                  5789***********************************8 PP

  == domain 21  score: 15.0 bits;  conditional E-value: 2e-05
                  HHHHHHHHHTTHHHHHHHHTTTSSHHHHHHHHHHH CS
         Arm    2 senkdavieaGavppLvrLLssedeevqeeAawAL 36  
                   en  a+ + Ga+ pL++L++ ++e+++ ++a+A+
  KOO24562.1 2606 TENQSAIARTGAIAPLCTLMREGSEDTKDQCAAAI 2640
                  6899*****************************98 PP

  == domain 22  score: 10.9 bits;  conditional E-value: 0.0004
                  HHHHHHHHHTTHHHHHHHHTT.TSSHHHHHHHH CS
         Arm    2 senkdavieaGavppLvrLLs.sedeevqeeAa 33  
                  ++nkd++ ++G+++pL+ LL     ++ q  +a
  KOO24562.1 2648 QGNKDTIAKLGGIDPLLGLLVtGSTDKSQVYVA 2680
                  68******************9844444444444 PP

  == domain 23  score: 5.3 bits;  conditional E-value: 0.023
                  HHTTHHHHHHHHTTTSSHHHHHHHH CS
         Arm    9 ieaGavppLvrLLssedeevqeeAa 33  
                   ++G++ppL++ L+s+ +++q +Aa
  KOO24562.1 2738 AKLGGIPPLITWLQSTTVTTQAAAA 2762
                  589******************9998 PP

  == domain 24  score: 18.6 bits;  conditional E-value: 1.4e-06
                  HHHTTHHHHHHHHTTTSSHHHHHHHHHHHHHHTT CS
         Arm    8 vieaGavppLvrLLssedeevqeeAawALsNLaa 41  
                  + ++ a+ppL++L    ++e qe A++AL+++a+
  KOO24562.1 2779 IAKSDAIPPLIALVAKSSVEAQEYATRALWHMAS 2812
                  78999**************************986 PP

  == domain 25  score: 6.9 bits;  conditional E-value: 0.0073
                  HHHHHHHHHTTHHHHHHHHTT CS
         Arm    2 senkdavieaGavppLvrLLs 22  
                  +en+ ++ +aGa++pL+ +L 
  KOO24562.1 2814 EENRTLIANAGAIKPLIGMLA 2834
                  589***************997 PP

  == domain 26  score: 19.0 bits;  conditional E-value: 1.1e-06
                  HHHHHHHTTHHHHHHHHTTTSSHHHHHHHHHHHHHHT CS
         Arm    4 nkdavieaGavppLvrLLssedeevqeeAawALsNLa 40  
                    +++  +G+v pLvrL +s++ + q++Aa++Ls La
  KOO24562.1 2858 VSIQIAAQGGVLPLVRLVESGSAGSQQQAASCLSELA 2894
                  55778899**************************997 PP

  == domain 27  score: 13.7 bits;  conditional E-value: 5.2e-05
                  HHHHHHHHHTTHHHHHHHHTTTSSHHHHHHHHHHHHHHT CS
         Arm    2 senkdavieaGavppLvrLLssedeevqeeAawALsNLa 40  
                  ++n+d v +a +++p ++LLss+  ++ e Aa+ L+ La
  KOO24562.1 2897 PKNRDIVANAHGIQPIIALLSSPTIGTPETAARVLARLA 2935
                  68********************************99887 PP

  == domain 28  score: 0.5 bits;  conditional E-value: 0.75
                  HHHHHHTTHHHHHHHHTTTS CS
         Arm    5 kdavieaGavppLvrLLsse 24  
                  + ++  +G++++L+++L+  
  KOO24562.1 3021 RAQIYMMGGIKRLISMLDGS 3040
                  6677789**********943 PP

  == domain 29  score: 25.6 bits;  conditional E-value: 9.5e-09
                  HHHHHHHHHTTHHHHHHHHTTTSSHHHHHHHHHHHHHHTT CS
         Arm    2 senkdavieaGavppLvrLLssedeevqeeAawALsNLaa 41  
                   +  da+ieaGavp+L+++++ +++  qe Aa+A+++Laa
  KOO24562.1 3106 ADMQDAIIEAGAVPALLAFIRIGSQLGQEHAARAIWHLAA 3145
                  67899*********************************96 PP

  == domain 30  score: 20.3 bits;  conditional E-value: 4.3e-07
                  HHHTTHHHHHHHHTTTSSHHHHHHHHHHHHHHT CS
         Arm    8 vieaGavppLvrLLssedeevqeeAawALsNLa 40  
                  +ieaGa+p Lv+LL+ ++++ qe Aa+ALs La
  KOO24562.1 3153 IIEAGAIPDLVQLLKMGSPKAQEMAAAALSDLA 3185
                  89****************************887 PP

  == domain 31  score: 28.0 bits;  conditional E-value: 1.6e-09
                  HHHHTTHHHHHHHHTTTSSHHHHHHHHHHHHHHT CS
         Arm    7 avieaGavppLvrLLssedeevqeeAawALsNLa 40  
                  a+ eaGa++pLv+LLss+ ++ +e+Aa+AL+++a
  KOO24562.1 3218 AIAEAGAIQPLVALLSSGTTQARENAAGALWHMA 3251
                  799*****************************98 PP

  == domain 32  score: 9.1 bits;  conditional E-value: 0.0015
                  HHHHHTTHHHHHHHHTTTSSHHHHHHHHHHHHHHT CS
         Arm    6 davieaGavppLvrLLssedeevqeeAawALsNLa 40  
                   a+ ++ ++ p v+ ++++ e+ q++Aa AL+ La
  KOO24562.1 3258 LAIAKCSGISPMVAIIDDGTEQAQKNAANALARLA 3292
                  4566***************************9998 PP

  == domain 33  score: 6.5 bits;  conditional E-value: 0.0092
                  HHHTTTSSHHHHHHHHHHHHHHTT CS
         Arm   18 vrLLssedeevqeeAawALsNLaa 41  
                  v LL ++++++q+ Aa+ Ls La+
  KOO24562.1 3307 VGLLANQNTGTQRRAACVLSDLAR 3330
                  679*****************9986 PP

  == domain 34  score: 28.5 bits;  conditional E-value: 1.2e-09
                  HHHHHHTTHHHHHHHHTTTSSHHHHHHHHHHHHHHT CS
         Arm    5 kdavieaGavppLvrLLssedeevqeeAawALsNLa 40  
                    ++++aGa+ pLv+LLs +  +v+eeAa+ALs La
  KOO24562.1 3336 PVVIVNAGAISPLVNLLSGGAADVKEEAARALSTLA 3371
                  56899****************************887 PP

  == domain 35  score: 11.3 bits;  conditional E-value: 0.00029
                  HHHHHHHHHTTHHHHHHHHTT...TSSHHHHHHHHHHH CS
         Arm    2 senkdavieaGavppLvrLLs...sedeevqeeAawAL 36  
                   +n+ a+++aGavp+Lv  L+   s++   qe Aa+ L
  KOO24562.1 3411 ADNCVAIVRAGAVPRLVVQLRgggSTSAIAQELAAAVL 3448
                  6899*****************98888887777777776 PP

  == domain 36  score: 8.0 bits;  conditional E-value: 0.0031
                  HHHTTHHHHHHHHTTTSSHHHHHHHHHHHHHHTT CS
         Arm    8 vieaGavppLvrLLssedeevqeeAawALsNLaa 41  
                  + ++++++pLv++L+++  + q  +a+ L+ La+
  KOO24562.1 3461 ILSSNCIRPLVSMLTTGTAGAQAYSAAVLAELAR 3494
                  5689**************************9996 PP

  == domain 37  score: 3.3 bits;  conditional E-value: 0.1
                  HHHTTHHHHHHHHTT.TSSHHHHHHHHHHHHHHT CS
         Arm    8 vieaGavppLvrLLs.sedeevqeeAawALsNLa 40  
                  + + G++ pLv++L    +   +  Aa+AL+ L+
  KOO24562.1 3503 IMSEGGIVPLVAMLGrESSSAAKASAASALRTLT 3536
                  6689**************************9887 PP

  == domain 38  score: 24.8 bits;  conditional E-value: 1.6e-08
                  HHHHHHHHTTHHHHHHHHTTTSSHHHHHHHHHHHH CS
         Arm    3 enkdavieaGavppLvrLLssedeevqeeAawALs 37  
                  e  +av +aGa++pLv+LLs ed+++++ Aa+A++
  KOO24562.1 3546 ELQKAVSDAGAIRPLVALLSEEDDTIRKRAAGAIA 3580
                  567899***************************96 PP

  == domain 39  score: 9.4 bits;  conditional E-value: 0.0012
                  HTTHHHHHHHHTT.TSSHHHHHHHHHHHHHHT CS
         Arm   10 eaGavppLvrLLs.sedeevqeeAawALsNLa 40  
                  +  ++  Lv+LL  s +eev  eAa+AL+ La
  KOO24562.1 3595 KNKGIGKLVSLLAsSVHEEVSAEAAAALAVLA 3626
                  5679999*********************9887 PP

  == domain 40  score: 13.3 bits;  conditional E-value: 6.7e-05
                  SHHHHHHHHHTTHHHHHHHHTT..TSSHHHHHHHHHHHHHHT CS
         Arm    1 nsenkdavieaGavppLvrLLs..sedeevqeeAawALsNLa 40  
                  n +n d + + G+++pL++LL+   + +  +e++a+AL+ L+
  KOO24562.1 3629 NKKNQDKLASDGGIEPLISLLNteGGGDYAKEASASALWSLC 3670
                  56899999*********************************9 PP

  == domain 41  score: 13.4 bits;  conditional E-value: 6.3e-05
                  HHHHHHHHHTTHHHHHHHHTTTSSHHHHHHHHHHHH CS
         Arm    2 senkdavieaGavppLvrLLssedeevqeeAawALs 37  
                   en  a+ +aG++ pLv+ L  ++e+ +e+Aa+AL+
  KOO24562.1 3675 HENQVAIANAGGIAPLVAVLGLTSEKAREQAAGALA 3710
                  5899******************************96 PP

  == domain 42  score: 7.1 bits;  conditional E-value: 0.006
                  HHHHHHHTTHHHHHHHHTTTSSH CS
         Arm    4 nkdavieaGavppLvrLLssede 26  
                  n + + +aG+++ Lv+LL+ ed 
  KOO24562.1 3756 NQRSIAKAGGIELLVSLLNVEDA 3778
                  777899************98886 PP

  == domain 43  score: -0.5 bits;  conditional E-value: 1.6
                  HHHHHHHHHHHHHHT CS
         Arm   26 eevqeeAawALsNLa 40  
                   +vq+e a+AL+ +a
  KOO24562.1 3800 AKVQKEMAAALWSMA 3814
                  68**********887 PP

  == domain 44  score: 18.6 bits;  conditional E-value: 1.5e-06
                  SHHHHHHHHHTTHHHHHHHHTTTSSHHHHHHHHHHHHHHT CS
         Arm    1 nsenkdavieaGavppLvrLLssedeevqeeAawALsNLa 40  
                  ++en  a+ + G+++pL+ +L+ ++  vq++Aa+AL+ La
  KOO24562.1 3817 SPENQAAIAKVGGIQPLIMMLD-GHSVVQCDAAGALWALA 3855
                  699*******************.*************9665 PP

  == domain 45  score: 21.9 bits;  conditional E-value: 1.3e-07
                  SHHHHHHHHHTTHHHHHHHHTTTSSHHHHHHHHHHH CS
         Arm    1 nsenkdavieaGavppLvrLLssedeevqeeAawAL 36  
                  +++n++++ ++ ++ pLv LL++++++ qe Aa+AL
  KOO24562.1 3857 DEHNRETIGKMHGIAPLVGLLKTGSPGAQETAAGAL 3892
                  579********************************9 PP

  == domain 46  score: 10.1 bits;  conditional E-value: 0.0007
                  THHHHHHHHTTTSSHHHHHHHHHHH CS
         Arm   12 GavppLvrLLssedeevqeeAawAL 36  
                  G++p Lv+L + ++e+ +e+Aa+AL
  KOO24562.1 3914 GGIPLLVSLFDGGSEKACEQAAGAL 3938
                  9***********************9 PP

  == domain 47  score: 10.8 bits;  conditional E-value: 0.00042
                  SHHHHHHHHHTTHHHHHHHHTTTSSHH CS
         Arm    1 nsenkdavieaGavppLvrLLssedee 27  
                  ++en+ a+ +aGavp Lvr L++++++
  KOO24562.1 3983 DPENRSAIAKAGAVPDLVRQLECGSDK 4009
                  69********************76654 PP

  == domain 48  score: 2.4 bits;  conditional E-value: 0.19
                  HHHHHTTTSSHHHHHHHHHHHHHH CS
         Arm   16 pLvrLLssedeevqeeAawALsNL 39  
                   Lv+LL s++  v++ A  AL+ +
  KOO24562.1 4035 ELVKLLASDKAAVRQRASEALTDM 4058
                  69***************9999865 PP

  == domain 49  score: -2.1 bits;  conditional E-value: 4.9
                  HHHHHTT....TSSHHHHHHHHHH CS
         Arm   16 pLvrLLs....sedeevqeeAawA 35  
                  pLv+LL+    ++ +e qe A++ 
  KOO24562.1 4083 PLVNLLKdglkDGRVEAQEYALRS 4106
                  8******99999999999999875 PP

  == domain 50  score: 9.8 bits;  conditional E-value: 0.0009
                  HHHHHHTTHHHHHHHHTT..TSSHHHHHHHHHHHHHHT CS
         Arm    5 kdavieaGavppLvrLLs..sedeevqeeAawALsNLa 40  
                  ++a++eaG++++L++ L+    +   qe Aa+ Ls La
  KOO24562.1 4116 REAIVEAGCIEALIESLRlrKLSAVAQEHAAAVLSGLA 4153
                  789*******************************9876 PP

  == domain 51  score: 13.3 bits;  conditional E-value: 6.7e-05
                  TTHHHHHHHHTTTSSHHHHHHHHHHHHHHTT CS
         Arm   11 aGavppLvrLLssedeevqeeAawALsNLaa 41  
                  a +++pLv LLs+++ + +e Aa +L+ La+
  KOO24562.1 4165 AKGIEPLVVLLSDGNADAKEHAADCLAQLAR 4195
                  679************************9996 PP

  == domain 52  score: -2.4 bits;  conditional E-value: 6.2
                  TTHHHHHHHHTTTSSHHHHHHHHHHHHHHT CS
         Arm   11 aGavppLvrLLssedeevqeeAawALsNLa 40  
                  aGav ++v+ L +++ +  e+Aa+ALs +a
  KOO24562.1 4206 AGAVSAFVKWLVDPSLGPPEVAARALSEIA 4235
                  555555555444444444478888888876 PP

  == domain 53  score: 2.8 bits;  conditional E-value: 0.14
                  HHHHHHTTHHHHHHHHTTT CS
         Arm    5 kdavieaGavppLvrLLss 23  
                    ++ e Ga+ pLv++ ss
  KOO24562.1 4242 QTQIAEEGAISPLVAMVSS 4260
                  44667**********9987 PP

  == domain 54  score: 7.1 bits;  conditional E-value: 0.0061
                  HHHHTTHHHHHHHHTT....T CS
         Arm    7 avieaGavppLvrLLs....s 23  
                  ++ e  ++ppLv+LL+     
  KOO24562.1 4325 MITEEEGIPPLVALLNhktpM 4345
                  556999**********55551 PP

  == domain 55  score: 27.2 bits;  conditional E-value: 2.8e-09
                  HHHHHHHHHTTHHHHHHHHTTTSSHHHHHHHHHHHHHHTT CS
         Arm    2 senkdavieaGavppLvrLLssedeevqeeAawALsNLaa 41  
                  +en  a+ +aG++ pLv+LL se+ ++q+ Aa+AL+ La+
  KOO24562.1 4365 EENQVAIAKAGGIAPLVALLASESGTTQQYAAAALQSLAR 4404
                  6899*********************************996 PP

  == domain 56  score: 25.3 bits;  conditional E-value: 1.2e-08
                  HHHHHHHHHTTHHHHHHHHTTTSSHHHHHHHHHHHHHHTT CS
         Arm    2 senkdavieaGavppLvrLLssedeevqeeAawALsNLaa 41  
                   en +a+ +aGa+ pLv+ L s++ ++qe A++AL  La+
  KOO24562.1 4407 TENQIALTKAGAIAPLVDILGSDSADTQEHAVGALLSLAS 4446
                  6999*******************************99885 PP

  == domain 57  score: -2.5 bits;  conditional E-value: 6.8
                  HHHHHHHHTTTSSHHHHHHHHHHHHHHTT CS
         Arm   13 avppLvrLLssedeevqeeAawALsNLaa 41  
                  +v+ L++ L+  + + q +Aa AL+ Laa
  KOO24562.1 4455 VVKKLIAVLELRSATAQMNAAEALAVLAA 4483
                  6788888888889999********99885 PP

  == domain 58  score: 10.1 bits;  conditional E-value: 0.0007
                  SHHHHHHHHHTTHHHHHHHHTT CS
         Arm    1 nsenkdavieaGavppLvrLLs 22  
                  ++en++a+  a+a++pLvrLL 
  KOO24562.1 4485 SEENRKAITAANAIEPLVRLLG 4506
                  579******************8 PP

  == domain 59  score: 28.3 bits;  conditional E-value: 1.3e-09
                  SHHHHHHHHHTTHHHHHHHHTTTSSHHHHHHHHHHHHHHTT CS
         Arm    1 nsenkdavieaGavppLvrLLssedeevqeeAawALsNLaa 41  
                  +s+nk a++ a++v pL+++Lss+++ +q+ A +AL+ Laa
  KOO24562.1 4530 SSDNKSAIVAANGVGPLIAMLSSDSVATQTYASGALWQLAA 4570
                  689************************************96 PP

  == domain 60  score: 30.2 bits;  conditional E-value: 3.3e-10
                  HHHHHHHTTHHHHHHHHTTTSSHHHHHHHHHHHHHHTT CS
         Arm    4 nkdavieaGavppLvrLLssedeevqeeAawALsNLaa 41  
                  nk ++ eaGa+ppLv+LLss ++e+ + Aa+AL++La+
  KOO24562.1 4574 NKTTIAEAGAIPPLVTLLSSSSTETHKCAAGALWHLAS 4611
                  78899*******************************96 PP

  == domain 61  score: 18.1 bits;  conditional E-value: 2.2e-06
                  HHHHHHHHTTHHHHHHHHTTTSSHHHHHHHHHHHHHHT CS
         Arm    3 enkdavieaGavppLvrLLssedeevqeeAawALsNLa 40  
                  e k+++ +aGa+p Lv+ Lss++ e +e Aa+ Ls La
  KOO24562.1 4614 ESKIQMGDAGAIPLLVQVLSSKSGEAREHAAAVLSALA 4651
                  67899*****************************9776 PP

  == domain 62  score: 23.6 bits;  conditional E-value: 4e-08
                  HHHHHHHTTHHHHHHHHTTTSSHHHHHHHHHHHHHHT CS
         Arm    4 nkdavieaGavppLvrLLssedeevqeeAawALsNLa 40  
                  nk+ + +aGa++pL+ LL+++  ++q+ Aa++L+ L+
  KOO24562.1 4657 NKKIIYHAGAIRPLIVLLTDKRSMTQRHAACCLWALS 4693
                  788999***************************9665 PP

  == domain 63  score: 4.4 bits;  conditional E-value: 0.042
                  THHHHHHHHTTTSSHHHHHHHHHHH CS
         Arm   12 GavppLvrLLssedeevqeeAawAL 36  
                  Ga+p L+++L  +d+e++  Aa+AL
  KOO24562.1 4708 GAIPLLIKMLLEDDTETRGFAAAAL 4732
                  9***************987777776 PP

  == domain 64  score: -0.2 bits;  conditional E-value: 1.2
                  HHHHTTHHHHHHHH CS
         Arm    7 avieaGavppLvrL 20  
                  a+ ++G++++L++L
  KOO24562.1 4744 AIKDSGGIDALLAL 4757
                  688*********98 PP

>> EF-hand_6  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.5   0.0      0.84   7.9e+02       5      21 ..      80      97 ..      77     105 .. 0.74
   2 ?    4.6   0.0     0.039        37       2      27 ..     544     569 ..     543     572 .. 0.88
   3 !   16.4   0.0   6.4e-06     0.006       2      29 ..     580     606 ..     579     608 .. 0.89
   4 !   21.9   0.1   1.1e-07   0.00011       2      28 ..     747     773 ..     746     778 .. 0.91
   5 !    9.3   0.0    0.0012       1.2       4      30 ..     786     811 ..     783     812 .. 0.86
   6 ?   -1.1   0.0       2.6   2.4e+03      15      31 .]     865     880 ..     861     882 .. 0.90
   7 !   12.7   0.0   9.8e-05     0.092       4      25 ..     891     912 ..     888     915 .. 0.91
   8 !   21.8   0.0   1.2e-07   0.00011       3      28 ..     955     980 ..     953     986 .. 0.89
   9 !   15.5   0.0   1.2e-05     0.012       3      27 ..     993    1017 ..     991    1026 .. 0.91
  10 ?   -1.4   0.0       3.2   3.1e+03       2      24 ..    1603    1625 ..    1602    1630 .. 0.77

  Alignments for each domain:
  == domain 1  score: 0.5 bits;  conditional E-value: 0.84
   EF-hand_6  5 aFklf.DkdgdGkidaeE 21
                +F+++ D+dg+G+    E
  KOO24562.1 80 LFEKYlDQDGSGTCLVRE 97
                677777******865555 PP

  == domain 2  score: 4.6 bits;  conditional E-value: 0.039
   EF-hand_6   2 lreaFklfDkdgdGkidaeElrkalr 27 
                 + ++ + +Dk+g+ +++++++ kalr
  KOO24562.1 544 MLDLLRSWDKSGSSEVSPADFSKALR 569
                 66788999*****************9 PP

  == domain 3  score: 16.4 bits;  conditional E-value: 6.4e-06
   EF-hand_6   2 lreaFklfDkdgdGkidaeElrkalrka 29 
                 + e+++++D+dg+G+++  E++k+l  +
  KOO24562.1 580 IIELYNKWDTDGNGTLSVREIQKILL-N 606
                 7899*******************996.5 PP

  == domain 4  score: 21.9 bits;  conditional E-value: 1.1e-07
   EF-hand_6   2 lreaFklfDkdgdGkidaeElrkalrk 28 
                 + ++Fk++D+d +G+++++E++ +l++
  KOO24562.1 747 IVDIFKQIDTDQSGELSRDEFKTVLKT 773
                 789**********************94 PP

  == domain 5  score: 9.3 bits;  conditional E-value: 0.0012
   EF-hand_6   4 eaFklfDkdgdGkidaeElrkalrkal 30 
                 ++ +l D+dg+G++ ++El+k+++  l
  KOO24562.1 786 AIVDLVDTDGSGSVRYAELKKLIK-GL 811
                 567899****************99.66 PP

  == domain 6  score: -1.1 bits;  conditional E-value: 2.6
   EF-hand_6  15 GkidaeElrkalrkalg 31 
                 G+i+  ++r+al+ +lg
  KOO24562.1 865 GTINHRQFRQALQ-DLG 880
                 89**********9.676 PP

  == domain 7  score: 12.7 bits;  conditional E-value: 9.8e-05
   EF-hand_6   4 eaFklfDkdgdGkidaeElrka 25 
                 ++F  +D+dg+G i ++Elr+a
  KOO24562.1 891 KVFASIDTDGSGLIEMSELRAA 912
                 79******************98 PP

  == domain 8  score: 21.8 bits;  conditional E-value: 1.2e-07
   EF-hand_6   3 reaFklfDkdgdGkidaeElrkalrk 28 
                  ++F+ +D +gdG i+++E+rk+l +
  KOO24562.1 955 LDLFRSWDENGDGLITKDEFRKVLHT 980
                 689********************985 PP

  == domain 9  score: 15.5 bits;  conditional E-value: 1.2e-05
   EF-hand_6    3 reaFklfDkdgdGkidaeElrkalr 27  
                  +++F  fD+dg+G i++ El ++++
  KOO24562.1  993 DSLFASFDTDGSGAITFGELTRMFS 1017
                  689*****************99987 PP

  == domain 10  score: -1.4 bits;  conditional E-value: 3.2
   EF-hand_6    2 lreaFklfDkdgdGkidaeElrk 24  
                  lr+  +++ +d dG id + +r+
  KOO24562.1 1603 LRRTLDALTRDADGRIDLARVRR 1625
                  5666667779*******988776 PP

>> EF-hand_1  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.0         4   3.8e+03       8      16 ..      84      92 ..      83      97 .. 0.85
   2 ?   -1.4   0.0       2.4   2.3e+03       6      27 ..     548     569 ..     544     570 .. 0.87
   3 !   10.0   0.0   0.00054      0.51       2      26 ..     580     604 ..     579     606 .. 0.89
   4 !   21.5   0.1   1.1e-07    0.0001       2      28 ..     747     773 ..     746     774 .. 0.92
   5 !   10.5   0.0   0.00037      0.34       1      28 [.     783     810 ..     783     811 .. 0.90
   6 ?   -2.4   0.0       5.1   4.8e+03      15      28 ..     865     878 ..     865     879 .. 0.90
   7 !   12.5   0.0   8.6e-05     0.081       3      26 ..     890     913 ..     888     914 .. 0.91
   8 !   19.2   0.0   6.2e-07   0.00059       4      28 ..     956     980 ..     953     981 .. 0.90
   9 !   18.5   0.0     1e-06   0.00096       2      27 ..     992    1017 ..     991    1019 .. 0.92

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 4
                HHTTTSSSE CS
   EF-hand_1  8 efDkDgdGk 16
                 +D+Dg+G+
  KOO24562.1 84 YLDQDGSGT 92
                58******8 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 2.4
                 HHHHTTTSSSEEEHHHHHHHHH CS
   EF-hand_1   6 FrefDkDgdGkIdfeEfkellk 27 
                  r  Dk g+  ++  +f ++l+
  KOO24562.1 548 LRSWDKSGSSEVSPADFSKALR 569
                 6778*************99987 PP

  == domain 3  score: 10.0 bits;  conditional E-value: 0.00054
                 HHHHHHHHTTTSSSEEEHHHHHHHH CS
   EF-hand_1   2 lkeiFrefDkDgdGkIdfeEfkell 26 
                 + e+ ++ D+Dg+G+++  E +++l
  KOO24562.1 580 IIELYNKWDTDGNGTLSVREIQKIL 604
                 6788999*************99987 PP

  == domain 4  score: 21.5 bits;  conditional E-value: 1.1e-07
                 HHHHHHHHTTTSSSEEEHHHHHHHHHH CS
   EF-hand_1   2 lkeiFrefDkDgdGkIdfeEfkellkk 28 
                 + +iF+ +D+D++G ++++Efk++lk+
  KOO24562.1 747 IVDIFKQIDTDQSGELSRDEFKTVLKT 773
                 568*********************996 PP

  == domain 5  score: 10.5 bits;  conditional E-value: 0.00037
                 HHHHHHHHHTTTSSSEEEHHHHHHHHHH CS
   EF-hand_1   1 elkeiFrefDkDgdGkIdfeEfkellkk 28 
                 e+  i +++D+Dg+G + + E+k+l+k 
  KOO24562.1 783 EISAIVDLVDTDGSGSVRYAELKKLIKG 810
                 5778999*****************9985 PP

  == domain 6  score: -2.4 bits;  conditional E-value: 5.1
                 SEEEHHHHHHHHHH CS
   EF-hand_1  15 GkIdfeEfkellkk 28 
                 G+I+  +f+++l++
  KOO24562.1 865 GTINHRQFRQALQD 878
                 99*********986 PP

  == domain 7  score: 12.5 bits;  conditional E-value: 8.6e-05
                 HHHHHHHTTTSSSEEEHHHHHHHH CS
   EF-hand_1   3 keiFrefDkDgdGkIdfeEfkell 26 
                  ++F+ +D+Dg+G I+ +E+++++
  KOO24562.1 890 AKVFASIDTDGSGLIEMSELRAAV 913
                 589*****************9986 PP

  == domain 8  score: 19.2 bits;  conditional E-value: 6.2e-07
                 HHHHHHTTTSSSEEEHHHHHHHHHH CS
   EF-hand_1   4 eiFrefDkDgdGkIdfeEfkellkk 28 
                 ++Fr  D +gdG I+++Ef+++l +
  KOO24562.1 956 DLFRSWDENGDGLITKDEFRKVLHT 980
                 79*******************9976 PP

  == domain 9  score: 18.5 bits;  conditional E-value: 1e-06
                  HHHHHHHHTTTSSSEEEHHHHHHHHH CS
   EF-hand_1    2 lkeiFrefDkDgdGkIdfeEfkellk 27  
                  ++ +F+ fD+Dg+G I+f E+ ++++
  KOO24562.1  992 VDSLFASFDTDGSGAITFGELTRMFS 1017
                  6889*******************986 PP

>> Atx10homo_assoc  Spinocerebellar ataxia type 10 protein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.0       9.5   8.9e+03       8      34 ..    1856    1882 ..    1853    1884 .. 0.90
   2 !   10.5   0.0    0.0005      0.47       8      68 ..    1896    1954 ..    1890    1957 .. 0.77
   3 !   12.4   0.0   0.00013      0.12       4      73 ..    1976    2043 ..    1973    2060 .. 0.88
   4 ?   -1.3   0.0       2.4   2.3e+03      46      70 ..    2098    2122 ..    2096    2132 .. 0.89
   5 ?    2.6   0.6      0.15   1.4e+02      45      70 ..    2134    2159 ..    2114    2181 .. 0.81
   6 !   11.3   0.0   0.00028      0.27       2      68 ..    2217    2284 ..    2216    2301 .. 0.89
   7 !   20.3   0.1   4.4e-07   0.00041       7      69 ..    2461    2521 ..    2456    2524 .. 0.93
   8 ?    5.5   0.0     0.018        17      12      70 ..    2559    2615 ..    2550    2622 .. 0.84
   9 ?   -0.4   0.0       1.3   1.2e+03       2      38 ..    2633    2669 ..    2632    2700 .. 0.70
  10 ?    5.2   0.0     0.023        22       9      40 ..    3098    3129 ..    3093    3147 .. 0.80
  11 ?    0.4   0.1      0.73   6.9e+02      23      69 ..    3260    3304 ..    3251    3314 .. 0.82
  12 ?   -0.9   0.0       1.8   1.7e+03       8      35 ..    3578    3605 ..    3571    3621 .. 0.77
  13 !   20.8   0.0   3.1e-07    0.0003       7      69 ..    3620    3683 ..    3614    3688 .. 0.91
  14 ?    3.1   0.5       0.1        97      17      71 ..    3675    3727 ..    3673    3748 .. 0.76
  15 ?    0.5   0.0      0.67   6.3e+02      12      48 ..    3749    3785 ..    3740    3788 .. 0.83
  16 ?    0.2   0.0      0.79   7.5e+02       7      33 ..    3808    3834 ..    3802    3871 .. 0.79
  17 ?   -2.1   0.0       4.3     4e+03      51      74 ..    3941    3964 ..    3932    3983 .. 0.83
  18 ?   -0.1   0.0         1   9.6e+02      14      81 ..    3981    4051 ..    3970    4069 .. 0.74
  19 ?   -3.1   0.0       8.6   8.1e+03       8      33 ..    4230    4255 ..    4228    4259 .. 0.86
  20 ?    0.7   0.0      0.56   5.3e+02      17      68 ..    4365    4414 ..    4357    4423 .. 0.79

  Alignments for each domain:
  == domain 1  score: -3.2 bits;  conditional E-value: 9.5
  Atx10homo_assoc    8 llgnlvyknkevqdkvreldgleliLs 34  
                        l+n++  + e+q ++ + ++++l+Ls
       KOO24562.1 1856 ALANAAAYSGEAQRNIASAGSIPLLLS 1882
                       6899999999***************97 PP

  == domain 2  score: 10.5 bits;  conditional E-value: 0.0005
  Atx10homo_assoc    8 llgnlvyknkevqdkvreldgleliLsqcn.iDdnnPfirewailairnLlegneenqelva 68  
                        l+ l+++nk++q ++ e +g++ +Ls  n iD +  +    a  a+  + ++n e q+ +a
       KOO24562.1 1896 ALAKLAHENKDIQTEIAEAGGIAPLLSLLNgIDMDAQVA---AAEALAEIADDNTETQAAIA 1954
                       689***********************9976355554443...44456667777777777776 PP

  == domain 3  score: 12.4 bits;  conditional E-value: 0.00013
  Atx10homo_assoc    4 elvrllgnlvyknkevqdkvreldgleliLsqcniDdnnPfirewailairnLlegneenqelvaeLeak 73  
                       + ++ l++l+ +n+++qd v + +g++ i +  +  +    ++ +a  a+  +  gn  nq+ v +L a 
       KOO24562.1 1976 KSMAALAQLTRHNRDNQDAVARMGGIKPIVQLLESSST--DVTSYAASALMEISRGNLPNQKTVVDLGAV 2043
                       568899***********************998766555..5889********************999765 PP

  == domain 4  score: -1.3 bits;  conditional E-value: 2.4
  Atx10homo_assoc   46 rewailairnLlegneenqelvaeL 70  
                       re+a  a+  L  +n++nq ++ +L
       KOO24562.1 2098 REHAAGALASLGLDNKANQVVLTQL 2122
                       899999***************9998 PP

  == domain 5  score: 2.6 bits;  conditional E-value: 0.15
  Atx10homo_assoc   45 irewailairnLlegneenqelvaeL 70  
                        +e+a+ a+  L+++n  ++e++a+ 
       KOO24562.1 2134 AQERAVKALNALVKENTSAHEVIAQA 2159
                       689********************986 PP

  == domain 6  score: 11.3 bits;  conditional E-value: 0.00028
  Atx10homo_assoc    2 KrelvrllgnlvyknkevqdkvreldgleliLsqcniD.dnnPfirewailairnLlegneenqelva 68  
                       K++  + l+ l+++n+e++  + e++g++ +++   ++ ++nP+ r ++  a+ nL  ++ +  e+v+
       KOO24562.1 2217 KEQAASALAKLAFENEETRASITECGGIQPLIKLLTLNaKENPMARMYGADALANLATDSDARDEIVS 2284
                       66777899*************************96665278***************999888777775 PP

  == domain 7  score: 20.3 bits;  conditional E-value: 4.4e-07
  Atx10homo_assoc    7 rllgnlvyknkevqdkvreldgleliLsqcniDdnnPfirewailairnLlegneenqelvae 69  
                       + l+nl+ +++++++ +++ +g+  +L+   +D+     +e a+ ai+ L+ ++++nq+lv++
       KOO24562.1 2461 AALANLARESEDNRKSIVDANGIVPLLD--ILDSASAKAKENAVGAIKELCRNSKNNQALVSR 2521
                       579************************9..57999999**********************975 PP

  == domain 8  score: 5.5 bits;  conditional E-value: 0.018
  Atx10homo_assoc   12 lvyknkevqdkvreldgleliLsqcniDdnnPfirewailairnLlegneenqelvaeL 70  
                       ++  n+++qd + e ++++ +            ++  a  a+ nL ++  enq+ +a+ 
       KOO24562.1 2559 MAKGNRKNQDAIAEAGAIQPLVGMLGSP--SSQMQANAAGALANLAQNHTENQSAIART 2615
                       6667999************999987655..5568999999**************99975 PP

  == domain 9  score: -0.4 bits;  conditional E-value: 1.3
  Atx10homo_assoc    2 KrelvrllgnlvyknkevqdkvreldgleliLsqcni 38  
                       K ++ + +  l+ +++ ++d++ +l+g+  +L   ++
       KOO24562.1 2633 KDQCAAAILALATDHQGNKDTIAKLGGIDPLLGLLVT 2669
                       6778888888999999************999976554 PP

  == domain 10  score: 5.2 bits;  conditional E-value: 0.023
  Atx10homo_assoc    9 lgnlvyknkevqdkvreldgleliLsqcniDd 40  
                       l+ ++y+n ++qd + e ++++++L  ++i +
       KOO24562.1 3098 LADIAYNNADMQDAIIEAGAVPALLAFIRIGS 3129
                       7899*********************9888865 PP

  == domain 11  score: 0.4 bits;  conditional E-value: 0.73
  Atx10homo_assoc   23 vreldgleliLsqcniDdnnPfirewailairnLlegneenqelvae 69  
                       + +++g++ +     iDd     ++ a  a+  L  +n++nq  +++
       KOO24562.1 3260 IAKCSGISPMV--AIIDDGTEQAQKNAANALARLATKNADNQMQISK 3304
                       55555555554..47999999999******************99976 PP

  == domain 12  score: -0.9 bits;  conditional E-value: 1.8
  Atx10homo_assoc    8 llgnlvyknkevqdkvreldgleliLsq 35  
                        ++ l+   +e+qd v +++g+  + s 
       KOO24562.1 3578 AIAALSVGMTEIQDAVEKNKGIGKLVSL 3605
                       689999999************9877665 PP

  == domain 13  score: 20.8 bits;  conditional E-value: 3.1e-07
  Atx10homo_assoc    7 rllgnlvyknkevqdkvreldgleliLsqcniDdnnPfirewailairnLlegn.eenqelvae 69  
                       + l+ l+++nk++qdk+ + +g+e ++s  n++   ++ +e +  a+  L+ g  +enq  +a+
       KOO24562.1 3620 AALAVLAHNNKKNQDKLASDGGIEPLISLLNTEGGGDYAKEASASALWSLCIGKhHENQVAIAN 3683
                       5799***********************************************8752799999986 PP

  == domain 14  score: 3.1 bits;  conditional E-value: 0.1
  Atx10homo_assoc   17 kevqdkvreldgleliLsqcniDdnnPfirewailairnLlegneenqelvaeLe 71  
                        e+q  + + +g++ +     + ++    re+a  a+  L  +n en e +a+L 
       KOO24562.1 3675 HENQVAIANAGGIAPLVAVLGLTSE--KAREQAAGALAALALNNTENEEAIAQLI 3727
                       5677777777777777766655554..479***********************96 PP

  == domain 15  score: 0.5 bits;  conditional E-value: 0.67
  Atx10homo_assoc   12 lvyknkevqdkvreldgleliLsqcniDdnnPfirew 48  
                        +  n ++q  + + +g+el+ s  n++d     +e+
       KOO24562.1 3749 FARANASNQRSIAKAGGIELLVSLLNVEDARAAPKEH 3785
                       55678999***************99999988777776 PP

  == domain 16  score: 0.2 bits;  conditional E-value: 0.79
  Atx10homo_assoc    7 rllgnlvyknkevqdkvreldgleliL 33  
                       + l +++++++e+q  + + +g++ ++
       KOO24562.1 3808 AALWSMAHNSPENQAAIAKVGGIQPLI 3834
                       556678999999999999999998776 PP

  == domain 17  score: -2.1 bits;  conditional E-value: 4.3
  Atx10homo_assoc   51 lairnLlegneenqelvaeLeakg 74  
                       l+++n++++++++ e va L+a+g
       KOO24562.1 3941 LCVQNVVNQTSAAYEAVAMLKAHG 3964
                       699999999999999999999876 PP

  == domain 18  score: -0.1 bits;  conditional E-value: 1
  Atx10homo_assoc   14 yknkevqdkvreldgleliLsq..cniDdnnPfi.rewailairnLlegneenqelvaeLeakgvvdeevL 81  
                        k++e+++ + + ++++ +  q  c  D++  +  +  a++a++    +    qelv+ L   +++ ++  
       KOO24562.1 3981 AKDPENRSAIAKAGAVPDLVRQleCGSDKSMSMAaQGLALIALKSAETHATVTQELVKLLASDKAAVRQRA 4051
                       47789999999999999999986688888887773568**********************98888533333 PP

  == domain 19  score: -3.1 bits;  conditional E-value: 8.6
  Atx10homo_assoc    8 llgnlvyknkevqdkvreldgleliL 33  
                        l+ ++ +n+++q ++ e+++++ + 
       KOO24562.1 4230 ALSEIALDNPDTQTQIAEEGAISPLV 4255
                       6899999*************998765 PP

  == domain 20  score: 0.7 bits;  conditional E-value: 0.56
  Atx10homo_assoc   17 kevqdkvreldgleliLsqcniDdnnPfirewailairnLlegneenqelva 68  
                       +e+q  + + +g++ +       ++    +++a  a++ L  +  enq  + 
       KOO24562.1 4365 EENQVAIAKAGGIAPLVALLA--SESGTTQQYAAAALQSLARDHTENQIALT 4414
                       567777777777777766544..4566789******************7765 PP

>> EF-hand_7  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.6   0.0   4.2e-06     0.004       8      69 ..     548     603 ..     543     605 .. 0.92
   2 !   30.8   0.2   3.1e-10   2.9e-07       3      70 ..     746     808 ..     745     809 .. 0.91
   3 !   12.8   0.0   0.00013      0.13      19      69 ..     867     912 ..     861     938 .. 0.73
   4 !   32.5   0.0   9.1e-11   8.5e-08       5      70 ..     955    1016 ..     951    1017 .. 0.87
   5 ?   -2.6   0.0       8.4     8e+03       4      27 ..    1603    1626 ..    1597    1635 .. 0.66

  Alignments for each domain:
  == domain 1  score: 17.6 bits;  conditional E-value: 4.2e-06
   EF-hand_7   8 FkelDtdgdgyldkeellrllrkifqgagegsklsdeelellfkefDtdkdGvisfdEFlkl 69 
                  ++ D+ g+  ++++++ ++lr      g g +  +e + +l +++Dtd++G++s  E +k+
  KOO24562.1 548 LRSWDKSGSSEVSPADFSKALR------GYGCPAAEEDIIELYNKWDTDGNGTLSVREIQKI 603
                 5778******************......******************************9987 PP

  == domain 2  score: 30.8 bits;  conditional E-value: 3.1e-10
   EF-hand_7   3 klkeaFkelDtdgdgyldkeellrllrkifqgagegsklsdeelellfkefDtdkdGvisfdEFlkly 70 
                 ++ ++Fk++Dtd++g l+++e++ +l+           ++d e+ ++++ +Dtd++G++ + E++kl+
  KOO24562.1 746 RIVDIFKQIDTDQSGELSRDEFKTVLKT-----YGFIRVTDAEISAIVDLVDTDGSGSVRYAELKKLI 808
                 67799******************99998.....67777799***********************9986 PP

  == domain 3  score: 12.8 bits;  conditional E-value: 0.00013
   EF-hand_7  19 ldkeellrllrkifqgagegsklsd.eelellfkefDtdkdGvisfdEFlkl 69 
                 ++ ++++++l+      + g++l   e + ++f  +Dtd++G i ++E++++
  KOO24562.1 867 INHRQFRQALQ------DLGVDLGNwENVAKVFASIDTDGSGLIEMSELRAA 912
                 55555555555......55555555566888888888888888888887766 PP

  == domain 4  score: 32.5 bits;  conditional E-value: 9.1e-11
   EF-hand_7    5 keaFkelDtdgdgyldkeellrllrkifqgagegsklsdeelellfkefDtdkdGvisfdEFlkly 70  
                   + F++ D +gdg ++k+e++++l+ +    +     s+ +++ lf  fDtd++G i+f E+ +++
  KOO24562.1  955 LDLFRSWDENGDGLITKDEFRKVLHTLP---SLHGT-SSSAVDSLFASFDTDGSGAITFGELTRMF 1016
                  578**********************975...66666.5568******************9998876 PP

  == domain 5  score: -2.6 bits;  conditional E-value: 8.4
   EF-hand_7    4 lkeaFkelDtdgdgyldkeellrl 27  
                  l++  ++l +d dg++d + ++rl
  KOO24562.1 1603 LRRTLDALTRDADGRIDLARVRRL 1626
                  444455555666777776666665 PP

>> V-ATPase_H_N  V-ATPase subunit H
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.8   0.0      0.13   1.2e+02     110     210 ..    1713    1809 ..    1697    1815 .. 0.70
   2 ?    2.6   0.2     0.071        67     104     157 ..    1949    2011 ..    1824    2170 .. 0.71
   3 !    8.7   0.0   0.00097      0.92     104     207 ..    2195    2303 ..    2132    2310 .. 0.81
   4 ?    1.0   0.0      0.22   2.1e+02     166     204 ..    2446    2495 ..    2393    2504 .. 0.61
   5 !   14.1   0.0   2.3e-05     0.021      90     200 ..    2803    2917 ..    2492    2951 .. 0.84
   6 ?    1.9   0.0      0.12   1.1e+02      84     199 ..    3278    3474 ..    3262    3526 .. 0.50
   7 ?    2.8   0.0     0.061        57      93     200 ..    3545    3650 ..    3464    3665 .. 0.78
   8 !    5.8   0.0    0.0079       7.4      92     199 ..    3709    3837 ..    3690    3888 .. 0.67
   9 ?   -1.2   0.0         1   9.9e+02     145     202 ..    3951    4004 ..    3924    4017 .. 0.74
  10 ?    3.5   0.1     0.039        37      99     201 ..    4026    4138 ..    4010    4198 .. 0.73
  11 !    6.3   0.0    0.0052       4.9     124     215 ..    4308    4394 ..    4168    4434 .. 0.67
  12 !   20.7   0.0   2.3e-07   0.00022      87     213 ..    4434    4559 ..    4420    4597 .. 0.82
  13 ?    2.3   0.0     0.091        86     108     247 ..    4586    4716 ..    4568    4723 .. 0.69

  Alignments for each domain:
  == domain 1  score: 1.8 bits;  conditional E-value: 0.13
  V-ATPase_H_N  110 lkllnrqddfivllalrllakllvqgkkksnklv..esaLnrllqlLssqlssstnevieiavrllqel.lrtkeyRelfveadgvstlisilrs 201 
                    +  ++  ++ + ++a+  l +l++q++ +++  v   +a++ l++lLss     t+ ++e+a+  l  l l + +  e++v a g+++l+++l+ 
    KOO24562.1 1713 VAEITTGNSEVRDHAAAQLRSLATQNHGQNQPDVlaAKAVEPLVKLLSS----GTACSQESAAATLGVLaLGKPDTQEAIVAAGGIGPLVNLLK- 1802
                    5555666777888899999999999999888834445555555555555....555566777777776625677999**************993. PP

  V-ATPase_H_N  202 tvanstrvg 210 
                        s++v+
    KOO24562.1 1803 --MGSSKVQ 1809
                    ..2234444 PP

  == domain 2  score: 2.6 bits;  conditional E-value: 0.071
  V-ATPase_H_N  104 d........pwkpflkllnrqddfivllalrllakllvqgkkksnklv.esaLnrllqlLssq 157 
                    +        +++p+l ll+++ +  + +++  la+l +++++++  +     ++ ++qlL+s+
    KOO24562.1 1949 TqaaiakagCFGPLLALLSSRSASAQSKSMAALAQLTRHNRDNQDAVArMGGIKPIVQLLESS 2011
                    112222233666666666666666666666666666666666665533333334444444443 PP

  == domain 3  score: 8.7 bits;  conditional E-value: 0.00097
  V-ATPase_H_N  104 d.....pwkpflkllnrqddfivllalrllakllvqgkkksnklv.esaLnrllqlLssqlssstnevieiavrllqellrtkeyRelfveadgv 192 
                           ++p++++l+    fi+++a+  lakl+ +++++   ++    ++ l++lL+ +++++       ++ +l++l+  ++ R  +v+a g+
    KOO24562.1 2195 IiseagGVQPLIQQLSDARVFIKEQAASALAKLAFENEETRASITeCGGIQPLIKLLTLNAKENPM-ARMYGADALANLATDSDARDEIVSAGGI 2288
                    244455689******************************999988655678888887766666444.44889*********************** PP

  V-ATPase_H_N  193 stlisilrstvanst 207 
                     +l+ +l++++++++
    KOO24562.1 2289 RPLVLVLEDEAQKTK 2303
                    *****9988777765 PP

  == domain 4  score: 1.0 bits;  conditional E-value: 0.22
  V-ATPase_H_N  166 i..........eiavrllqellrtk.eyRelfveadgvstlisilrstva 204 
                               e a+ +l++l+r++ + R+ +v+a+g+ +l++il s  a
    KOO24562.1 2446 KgggtgaaaaqEQAAAALANLARESeDNRKSIVDANGIVPLLDILDSASA 2495
                    1333333333388999999999975169*****************53333 PP

  == domain 5  score: 14.1 bits;  conditional E-value: 2.3e-05
  V-ATPase_H_N   90 rvelflslakkeeqd.......pwkpflkllnrqddfivllalrllakllvqgkkksnklvesaLnrllqlLssqlssstnevieiavrllqell 177 
                     + ++  +a +ee++        +kp++ +l  + d   +la+ +l++l++ + + s ++   a   +l l++ + +s ++++++ a+ +l+el+
    KOO24562.1 2803 ATRALWHMASQEENRtlianagAIKPLIGMLAAEGDVAAELAAIILVRLARGNTEVSIQI--AAQGGVLPLVR-LVESGSAGSQQQAASCLSELA 2894
                    444444444455554567777788999999999999999999999999999999988882..33344444444.5556688899*********** PP

  V-ATPase_H_N  178 rtkeyRelfveadgvstlisilr 200 
                     + + R ++ +a+g++++i++l+
    KOO24562.1 2895 LVPKNRDIVANAHGIQPIIALLS 2917
                    ********************995 PP

  == domain 6  score: 1.9 bits;  conditional E-value: 0.12
  V-ATPase_H_N   84 lsedksrvelflslakkeeqd...pwkpflkllnrqddfivllalrllakllvqgkkksnklv.esaLnrllqlLssqlss.............. 160 
                     + +k+ +++++ la k+ ++   + k+ + ll +q+  +++ a+ +l  l++ ++ +   +v   a+  l++lLs  +++              
    KOO24562.1 3278 EQAQKNAANALARLATKNADNqmqISKYCVGLLANQNTGTQRRAACVLSDLARDNPGSPVVIVnAGAISPLVNLLSGGAADvkeeaaralstlal 3372
                    44445555555555554444444455555555555555555555555555555555444443344444444444444333322233333333333 PP

  V-ATPase_H_N  161 ...............................................................stnevieiavrllqellrtkeyRelfveadgv 192 
                                                                                    ++  +e a+  l+ l+ t++  + +++++++
    KOO24562.1 3373 nspstqlaiasglvvlvgtgsaesqehvsqllltlskdadncvaivragavprlvvqlrgggsTSAIAQELAAAVLACLAATEDGIRGILSSNCI 3467
                    33333333333333333332222233333333333333333555555555555555555555433333466666666666666555555556666 PP

  V-ATPase_H_N  193 stlisil 199 
                     +l+s+l
    KOO24562.1 3468 RPLVSML 3474
                    6666655 PP

  == domain 7  score: 2.8 bits;  conditional E-value: 0.061
  V-ATPase_H_N   93 lflslakkeeqdpwkpflkllnrqddfivllalrllakllvqgkkksnklv.esaLnrllqlLssqlssstnevieiavrllqellrtkeyRelf 186 
                    + l+ a ++ +  + p++ ll+++dd i + a+  +a l v   + +  ++ ++ + +l++lL s+ ++   ev + a+ +l+ l+++++  +  
    KOO24562.1 3545 AELQKAVSDAG-AIRPLVALLSEEDDTIRKRAAGAIAALSVGMTEIQDAVEkNKGIGKLVSLLASSVHE---EVSAEAAAALAVLAHNNKKNQDK 3635
                    44444443333.8999************99999999988777777777755788999999999998888...45578888888888776555444 PP

  V-ATPase_H_N  187 ve.adgvstlisilr 200 
                    +    g+++lis+l+
    KOO24562.1 3636 LAsDGGIEPLISLLN 3650
                    443778888888884 PP

  == domain 8  score: 5.8 bits;  conditional E-value: 0.0079
  V-ATPase_H_N   92 elflslakkeeqd.pwkpflkllnrqddfivllalrllakllvqgkkksnklv....esaLnrllqlLss.....qlssstnevi.......... 166 
                     + l l++ e+++ +++ ++ ll ++d++   +a+  + +++++++ ++  +      ++L  ll+           ++++n++           
    KOO24562.1 3709 LAALALNNTENEEaIAQLIVSLLGSEDKQASAKAALAVSRFARANASNQRSIAkaggIELLVSLLN---VedaraAPKEHSNSSShsasvvldaa 3800
                    444455555555559999999*************************99999776444444444444...33334444444554552333344444 PP

  V-ATPase_H_N  167 ....eiavrllqellrtkeyRelfveadgvstlisil 199 
                        e+a+ l ++   + e   ++ ++ g+++li +l
    KOO24562.1 3801 kvqkEMAAALWSMAHNSPENQAAIAKVGGIQPLIMML 3837
                    4444555555555555555555555566666666665 PP

  == domain 9  score: -1.2 bits;  conditional E-value: 1
  V-ATPase_H_N  145 saLnrllqlLssqlssstnevieiavrllqellrtkeyRelfveadgvstlisilrst 202 
                    sa    +++L+ + +s+++   e +++ll +l++  e R+++ +a  v+ l++ l  +
    KOO24562.1 3951 SAAYEAVAMLKAHGDSPKA--AEHVTQLLRNLAKDPENRSAIAKAGAVPDLVRQL--E 4004
                    5666677778887777655..6999*******************99999999988..3 PP

  == domain 10  score: 3.5 bits;  conditional E-value: 0.039
  V-ATPase_H_N   99 kkeeqdpwkpflkllnrqddfivllalrllakllvqgkkksnklv.....esaL..nrllqlLssqlssstnevieiavrllqellrtkeyRelf 186 
                     +++ ++ + ++kll ++ + + + a+  l+ +++  k++ +        +  +    l++lL++ l++   e +e a+r+l ++  t   Re++
    KOO24562.1 4026 AETHATVTQELVKLLASDKAAVRQRASEALTDMAADDKNSTTSKAkksgpSAGVqgVPLVNLLKDGLKDGRVEAQEYALRSLLAISDT-ISREAI 4119
                    3344448888888888888899999999999998887776666445566544444556889999999999999999999998776544.579999 PP

  V-ATPase_H_N  187 veadgvstlisilr....s 201 
                    vea +++ li++lr    s
    KOO24562.1 4120 VEAGCIEALIESLRlrklS 4138
                    9999999999998644441 PP

  == domain 11  score: 6.3 bits;  conditional E-value: 0.0052
  V-ATPase_H_N  124 alrllakllvqgkkksnklv.esaLnrllqlLssqlssstnevieiavrllqellrtkeyRelfveadgvstlisilrstvanstrvgiQlqY 215 
                    a+  la+l+  +  +++ ++ e+ ++ l++lL++++ ++++++ e + ++l  l+ t+e   ++ +a g+ +l+++l      ++++g+  qY
    KOO24562.1 4308 AAGALATLAKDNIINQTMITeEEGIPPLVALLNHKTPMHKADSYEHTCKALWHLAATEENQVAIAKAGGIAPLVALL------ASESGTTQQY 4394
                    33334444444444444333466666666666666666777777777777777777777777777777777777777......4444444444 PP

  == domain 12  score: 20.7 bits;  conditional E-value: 2.3e-07
  V-ATPase_H_N   87 dksrvelflslakkeeqd...pwkpflkllnrqddfivllalrllakllvqgkkksnklv.esaLnrllqlLssqlssstnevieiavrllqell 177 
                    +++ v ++lsla ++ ++   ++k ++ +l+ + +  ++ a+  la l++ ++++ + ++  +a++ l++lL +      n  +e a+  l+ l+
    KOO24562.1 4434 QEHAVGALLSLASHDVNSrnaVVKKLIAVLELRSATAQMNAAEALAVLAARSEENRKAITaANAIEPLVRLLGDGRRVRANTPQERAAAVLADLA 4528
                    5566666777777666666789***********************************99999************99999999************* PP

  V-ATPase_H_N  178 rtkeyRelfveadgvstlisilrstvanstrvgiQl 213 
                    r+++ ++++v a+gv++li++l     +s +v +Q 
    KOO24562.1 4529 RSSDNKSAIVAANGVGPLIAML-----SSDSVATQT 4559
                    **********************.....555555553 PP

  == domain 13  score: 2.3 bits;  conditional E-value: 0.091
  V-ATPase_H_N  108 pflkllnrqddfivllalrllakllvqgkkksnklvesaLnrllqlLssqlssstnevieiavrllqellrtkey.Relfveadgvstlisilrs 201 
                    p++ ll+++   + + a+  l  l++ ++ k +     a++ l+q+Lss+      e  e a+  l++l+r+    ++++  a  + +li +l  
    KOO24562.1 4586 PLVTLLSSSSTETHKCAAGALWHLASSAESKIQMGDAGAIPLLVQVLSSKS----GEAREHAAAVLSALARSLGTnKKIIYHAGAIRPLIVLL-- 4674
                    666666666666666666666666666655555545777777777777633....33347888889999988655156666699999999988.. PP

  V-ATPase_H_N  202 tvanstrvgiQlqYqvllclWlLsFekkiaeelvkkk.elipllvdi 247 
                        ++r+ +Q   ++  clW Ls  ++++ +    + + ipll++ 
    KOO24562.1 4675 ---TDKRSMTQR--HAACCLWALSDGNEGVYDKAIAEgGAIPLLIKM 4716
                    ...678888886..789999999987777766666666777777765 PP

>> EF-hand_5  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.4   0.0     0.015        14       9      24 ..     588     603 ..     585     605 .. 0.89
   2 !   24.5   0.4   1.3e-08   1.2e-05       1      25 []     747     771 ..     747     771 .. 0.94
   3 ?    1.9   0.0      0.19   1.8e+02       8      24 ..     791     807 ..     789     808 .. 0.86
   4 !   15.3   0.0     1e-05    0.0099       3      23 ..     891     911 ..     889     913 .. 0.90
   5 !   16.1   0.3   6.2e-06    0.0058       3      24 ..     956     977 ..     954     978 .. 0.90
   6 !   14.0   0.1   2.7e-05     0.026       3      24 ..     994    1015 ..     992    1017 .. 0.87
   7 ?   -3.4   0.0       8.9   8.4e+03      11      17 ..    1613    1619 ..    1607    1620 .. 0.88
   8 ?   -2.1   0.0       3.6   3.4e+03      12      21 ..    4093    4102 ..    4093    4104 .. 0.89

  Alignments for each domain:
  == domain 1  score: 5.4 bits;  conditional E-value: 0.015
                 -SS-SSCE-HHHHHHH CS
   EF-hand_5   9 DlNgDGkIskeELktl 24 
                 D++g G++s+ E +++
  KOO24562.1 588 DTDGNGTLSVREIQKI 603
                 9***********9984 PP

  == domain 2  score: 24.5 bits;  conditional E-value: 1.3e-08
                 HHHHHHHH-SS-SSCE-HHHHHHHH CS
   EF-hand_5   1 lkdtFqaiDlNgDGkIskeELktlv 25 
                 ++d F++iD++++G +s++E+kt++
  KOO24562.1 747 IVDIFKQIDTDQSGELSRDEFKTVL 771
                 6899******************975 PP

  == domain 3  score: 1.9 bits;  conditional E-value: 0.19
                 H-SS-SSCE-HHHHHHH CS
   EF-hand_5   8 iDlNgDGkIskeELktl 24 
                 +D++g+G +   ELk+l
  KOO24562.1 791 VDTDGSGSVRYAELKKL 807
                 8*******999999886 PP

  == domain 4  score: 15.3 bits;  conditional E-value: 1e-05
                 HHHHHH-SS-SSCE-HHHHHH CS
   EF-hand_5   3 dtFqaiDlNgDGkIskeELkt 23 
                 ++F  iD++g+G I ++EL++
  KOO24562.1 891 KVFASIDTDGSGLIEMSELRA 911
                 69*****************97 PP

  == domain 5  score: 16.1 bits;  conditional E-value: 6.2e-06
                 HHHHHH-SS-SSCE-HHHHHHH CS
   EF-hand_5   3 dtFqaiDlNgDGkIskeELktl 24 
                 d+F+  D NgDG I+k+E++++
  KOO24562.1 956 DLFRSWDENGDGLITKDEFRKV 977
                 689999**************97 PP

  == domain 6  score: 14.0 bits;  conditional E-value: 2.7e-05
                  HHHHHH-SS-SSCE-HHHHHHH CS
   EF-hand_5    3 dtFqaiDlNgDGkIskeELktl 24  
                   +F  +D++g+G I++ EL ++
  KOO24562.1  994 SLFASFDTDGSGAITFGELTRM 1015
                  48*****************884 PP

  == domain 7  score: -3.4 bits;  conditional E-value: 8.9
                  S-SSCE- CS
   EF-hand_5   11 NgDGkIs 17  
                  + DG+I+
  KOO24562.1 1613 DADGRID 1619
                  78****9 PP

  == domain 8  score: -2.1 bits;  conditional E-value: 3.6
                  -SSCE-HHHH CS
   EF-hand_5   12 gDGkIskeEL 21  
                  +DG++ ++E 
  KOO24562.1 4093 KDGRVEAQEY 4102
                  7*******96 PP

>> EF-hand_8  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.0         5   4.7e+03      18      35 ..     305     327 ..     295     328 .. 0.73
   2 !    7.6   0.0    0.0035       3.3       4      47 ..     558     599 ..     555     601 .. 0.86
   3 !   13.7   0.1   4.5e-05     0.043      28      53 ..     747     772 ..     743     774 .. 0.89
   4 !   24.4   0.0     2e-08   1.9e-05       2      50 ..     759     806 ..     758     809 .. 0.85
   5 ?    1.0   0.0      0.41   3.9e+02      10      47 ..     872     908 ..     864     913 .. 0.72
   6 !   30.5   0.1   2.5e-10   2.4e-07       2      48 ..     966    1012 ..     965    1018 .. 0.85

  Alignments for each domain:
  == domain 1  score: -2.5 bits;  conditional E-value: 5
   EF-hand_8  18 glkk.....glseeevdilfref 35 
                 g +k     gls +e++++++ f
  KOO24562.1 305 GNEKgnvalGLSHSEICSMLDSF 327
                 4444677788*********9865 PP

  == domain 2  score: 7.6 bits;  conditional E-value: 0.0035
   EF-hand_8   4 kItreelrrilrilglkkglseeevdilfrefDtdgdGkisfeE 47 
                 ++++++++++lr  g +    ee++ +l ++ Dtdg+G++s  E
  KOO24562.1 558 EVSPADFSKALRGYGCP--AAEEDIIELYNKWDTDGNGTLSVRE 599
                 689******99855555..88888****************9766 PP

  == domain 3  score: 13.7 bits;  conditional E-value: 4.5e-05
   EF-hand_8  28 vdilfrefDtdgdGkisfeEFcvlle 53 
                 + ++f+ +Dtd++G +s +EF  +l+
  KOO24562.1 747 IVDIFKQIDTDQSGELSRDEFKTVLK 772
                 678******************99887 PP

  == domain 4  score: 24.4 bits;  conditional E-value: 2e-08
   EF-hand_8   2 kgkItreelrrilrilglkk....glseeevdilfrefDtdgdGkisfeEFcv 50 
                 +g+++r+e+++ l+           +++ e+ ++++++Dtdg+G + + E   
  KOO24562.1 759 SGELSRDEFKTVLK-----TygfiRVTDAEISAIVDLVDTDGSGSVRYAELKK 806
                 79*********664.....444556***********************99876 PP

  == domain 5  score: 1.0 bits;  conditional E-value: 0.41
   EF-hand_8  10 lrrilrilglkkglseee.vdilfrefDtdgdGkisfeE 47 
                 +r +l  lg    l++ e v  +f  +Dtdg+G i   E
  KOO24562.1 872 FRQALQDLGVD--LGNWEnVAKVFASIDTDGSGLIEMSE 908
                 66666555655..6665558888999*******997666 PP

  == domain 6  score: 30.5 bits;  conditional E-value: 2.5e-10
   EF-hand_8    2 kgkItreelrrilril.glkkglseeevdilfrefDtdgdGkisfeEF 48  
                  +g It++e+r+ l +l  l+ g+s ++vd+lf  fDtdg+G+i+f E 
  KOO24562.1  966 DGLITKDEFRKVLHTLpSLH-GTSSSAVDSLFASFDTDGSGAITFGEL 1012
                  8**********775554555.7***********************886 PP

>> Cnd1  non-SMC mitotic condensation complex subunit 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.5   0.1      0.59   5.6e+02      39     132 ..    1891    1990 ..    1889    1996 .. 0.67
   2 ?    3.2   0.0     0.084        79      28      88 ..    1964    2029 ..    1957    2060 .. 0.77
   3 ?    3.6   0.0     0.065        61      23      52 ..    2202    2232 ..    2180    2272 .. 0.84
   4 ?   -0.7   0.0       1.4   1.3e+03      24      66 ..    2289    2336 ..    2255    2425 .. 0.57
   5 ?    3.6   0.0     0.065        61      51     137 ..    2567    2653 ..    2551    2720 .. 0.65
   6 ?   -2.2   0.0         4   3.8e+03      45      85 ..    3143    3184 ..    3134    3186 .. 0.77
   7 !    6.3   0.0    0.0095         9      23     112 ..    3225    3317 ..    3218    3335 .. 0.79
   8 ?    0.1   0.0      0.76   7.1e+02      38     125 ..    3318    3406 ..    3309    3418 .. 0.71
   9 !   12.1   0.1   0.00016      0.15      23      94 ..    3557    3634 ..    3554    3652 .. 0.83
  10 ?   -0.5   0.0       1.2   1.2e+03      34      89 ..    3698    3753 ..    3687    3774 .. 0.81
  11 ?    1.5   0.2      0.29   2.7e+02      56      96 ..    4029    4069 ..    4012    4131 .. 0.74
  12 !    7.4   0.0    0.0045       4.2      23      99 ..    4168    4248 ..    4159    4282 .. 0.82
  13 !    7.4   0.1    0.0044       4.1      53     156 ..    4370    4474 ..    4352    4479 .. 0.86
  14 ?    5.5   0.0     0.017        16      23      85 ..    4667    4735 ..    4570    4751 .. 0.82

  Alignments for each domain:
  == domain 1  score: 0.5 bits;  conditional E-value: 0.59
        Cnd1   39 ktaaivvakL..ilndm...vkekgflselaklleDenprVvanalaalteiseksena.iynllpdiisklsdalnecsewgqitilefLlsyipk 129 
                  k aa ++akL   ++d+   + e g ++ l++ll+  +   +  a  al ei++ ++++ +   +  ++  l++ l + s  +q + + +L++ +  
  KOO24562.1 1891 KPAATALAKLahENKDIqteIAEAGGIAPLLSLLNGIDMDAQVAAAEALAEIADDNTETqAAIAKAGCFGPLLALLSSRSASAQSKSMAALAQLTRH 1987
                  6799999999752333223366777899999999655555555678899999999544404444456778888777778888888888888877766 PP

        Cnd1  130 dkq 132 
                  ++ 
  KOO24562.1 1988 NRD 1990
                  665 PP

  == domain 2  score: 3.2 bits;  conditional E-value: 0.084
        Cnd1   28 krLkDedpyVRktaaivvakL.....ilndmvkekgflselaklleDenprVvanalaalteisek 88  
                  + L+ +++  +   + ++a+L      ++d v   g ++ + +lle +++ V + a +al+eis+ 
  KOO24562.1 1964 ALLSSRSASAQSKSMAALAQLtrhnrDNQDAVARMGGIKPIVQLLESSSTDVTSYAASALMEISRG 2029
                  55666666666667777888876444456699999****************************986 PP

  == domain 3  score: 3.6 bits;  conditional E-value: 0.065
        Cnd1   23 vepLrkrLkDedpyVRktaaivvakL.ilnd 52  
                  v+pL ++L+D    ++++aa ++akL ++n+
  KOO24562.1 2202 VQPLIQQLSDARVFIKEQAASALAKLaFENE 2232
                  789***********************86655 PP

  == domain 4  score: -0.7 bits;  conditional E-value: 1.4
        Cnd1   24 epLrkrLkDedpyVRktaaivvakL.....ilndmvkekgflselakl 66  
                   pL   L+De +  +k aa ++a+L      ++  + e g +  l  l
  KOO24562.1 2289 RPLVLVLEDEAQKTKKYAARALARLskdhaSTQAAIAEAGAIVLLVAL 2336
                  344444555555555555555555544432222234444444444444 PP

  == domain 5  score: 3.6 bits;  conditional E-value: 0.065
        Cnd1   51 ndmvkekgflselaklleDenprVvanalaalteisek.senaiynllpdiisklsdalnecsewgqitilefLlsyipkdkqeaesl 137 
                  +d + e g ++ l  +l  ++++ +ana  al +++++ +en+        i  l + + e se++  +   ++l   ++ +  +++ 
  KOO24562.1 2567 QDAIAEAGAIQPLVGMLGSPSSQMQANAAGALANLAQNhTENQSAIARTGAIAPLCTLMREGSEDTKDQCAAAILALATDHQG-NKDT 2653
                  67777888888888888888888888888888888888533333333344555555555555555555555554444443333.3333 PP

  == domain 6  score: -2.2 bits;  conditional E-value: 4
        Cnd1   45 vakL.ilndmvkekgflselaklleDenprVvanalaaltei 85  
                  +a L   + +++e g + +l +ll+  +p+ +++a aal+++
  KOO24562.1 3143 LAALfEVHVIIIEAGAIPDLVQLLKMGSPKAQEMAAAALSDL 3184
                  444433344788999************************997 PP

  == domain 7  score: 6.3 bits;  conditional E-value: 0.0095
        Cnd1   23 vepLrkrLkDedpyVRktaaivvakL.....ilndmvkekgflselaklleDenprVvanalaalteiseksenaiynllpdiisklsdalnecs 112 
                  ++pL + L+    + R++aa ++ ++     i+  + k +g +s +  +++D  ++ ++na +al  +++k+ ++ +++ + ++  l ++ n+ +
  KOO24562.1 3225 IQPLVALLSSGTTQARENAAGALWHMaidrpIQLAIAKCSG-ISPMVAIIDDGTEQAQKNAANALARLATKNADNQMQISKYCVGLLANQ-NTGT 3317
                  67888888888899999999999999954444444555555.999**************************9999999999999999854.4333 PP

  == domain 8  score: 0.1 bits;  conditional E-value: 0.76
        Cnd1   38 RktaaivvakL.....ilndmvkekgflselaklleDenprVvanalaalteiseksenaiynllpdiisklsdalnecsewgqitilefLls 125 
                  ++ aa v++ L      ++ ++ + g +s l +ll+   + V + a  al+ ++ +s+++ + + + ++  +     + s ++q ++ ++Ll+
  KOO24562.1 3318 QRRAACVLSDLardnpGSPVVIVNAGAISPLVNLLSGGAADVKEEAARALSTLALNSPSTQLAIASGLVVLVG----TGSAESQEHVSQLLLT 3406
                  567888888886644444457788889***********************99999998777666555544444....4455566666555555 PP

  == domain 9  score: 12.1 bits;  conditional E-value: 0.00016
        Cnd1   23 vepLrkrLkDedpyVRktaaivvakL......ilndmvkekgflselakll.eDenprVvanalaalteiseksenaiy 94  
                  + pL + L+ ed ++Rk aa ++a L      i +d v++++ + +l +ll +  +++V+a a aal  ++++++++  
  KOO24562.1 3557 IRPLVALLSEEDDTIRKRAAGAIAALsvgmteI-QDAVEKNKGIGKLVSLLaSSVHEEVSAEAAAALAVLAHNNKKNQD 3634
                  67999**********************987633.45666666799999999677889***********99999766554 PP

  == domain 10  score: -0.5 bits;  conditional E-value: 1.2
        Cnd1   34 dpyVRktaaivvakLilndmvkekgflselaklleDenprVvanalaalteiseks 89  
                  ++  R++aa ++a L ln++  e+ + + + +ll  e+++ +a a +a +  ++ +
  KOO24562.1 3698 SEKAREQAAGALAALALNNTENEEAIAQLIVSLLGSEDKQASAKAALAVSRFARAN 3753
                  55669999999999999999999999999999999999999999988888777664 PP

  == domain 11  score: 1.5 bits;  conditional E-value: 0.29
        Cnd1   56 ekgflselaklleDenprVvanalaalteiseksenaiynl 96  
                     + +el kll  +++ V++ a  alt+++  ++n + + 
  KOO24562.1 4029 HATVTQELVKLLASDKAAVRQRASEALTDMAADDKNSTTSK 4069
                  44578899999999999999999999999999987766554 PP

  == domain 12  score: 7.4 bits;  conditional E-value: 0.0045
        Cnd1   23 vepLrkrLkDedpyVRktaaivvakL...ilndm.vkekgflselaklleDenprVvanalaalteiseksenaiynllpd 99  
                  +epL   L+D ++  +++aa ++a+L    ++ + +   g +s + k l D++    + a  al+ei+  ++++  ++  +
  KOO24562.1 4168 IEPLVVLLSDGNADAKEHAADCLAQLarrASASLeIAAAGAVSAFVKWLVDPSLGPPEVAARALSEIALDNPDTQTQIAEE 4248
                  78999*********************76644444488899*************999999999*****99988877777655 PP

  == domain 13  score: 7.4 bits;  conditional E-value: 0.0044
        Cnd1   53 mvkekgflselaklleDenprVvanalaalteisek.senaiynllpdiisklsdalnecsewgqitilefLlsyipkdkqeaeslveklcprlqha 148 
                   + + g ++ l  ll  e+ + ++ a aal+ +++  +en+i   +   i  l+d l + s ++q + + +Lls  + d +  + +v+kl++ l+  
  KOO24562.1 4370 AIAKAGGIAPLVALLASESGTTQQYAAAALQSLARDhTENQIALTKAGAIAPLVDILGSDSADTQEHAVGALLSLASHDVNSRNAVVKKLIAVLELR 4466
                  46667789999999*9*******************98778888888999*******************************************99998 PP

        Cnd1  149 nsavvlaa 156 
                      +++a
  KOO24562.1 4467 SATAQMNA 4474
                  88888876 PP

  == domain 14  score: 5.5 bits;  conditional E-value: 0.017
        Cnd1   23 vepLrkrLkDedpyVRktaaivvakL......ilndmvkekgflselaklleDenprVvanalaaltei 85  
                  + pL   L+D+ ++ +++aa ++  L      +  + + e g +  l k+l +++++ +  a aal  i
  KOO24562.1 4667 IRPLIVLLTDKRSMTQRHAACCLWALsdgnegVYDKAIAEGGAIPLLIKMLLEDDTETRGFAAAALLCI 4735
                  567777788888888888888888888777776677777777888888888777777777777776555 PP

>> Arm_2  Armadillo-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.5   0.0      0.01       9.9       7      89 ..    1745    1827 ..    1740    1833 .. 0.84
   2 ?   -0.3   0.0      0.64     6e+02      28      79 ..    1848    1901 ..    1828    1913 .. 0.73
   3 !   14.2   0.3   2.4e-05     0.023      15     187 ..    2002    2172 ..    1989    2187 .. 0.88
   4 !   13.9   0.0     3e-05     0.028      16     173 ..    2164    2325 ..    2158    2338 .. 0.76
   5 ?   -0.5   0.0      0.71   6.7e+02      16      88 ..    2332    2404 ..    2323    2417 .. 0.85
   6 ?    2.9   0.3     0.067        64      30      90 ..    2456    2517 ..    2450    2521 .. 0.77
   7 ?    5.0   0.0     0.015        14      45     172 ..    2565    2697 ..    2527    2703 .. 0.69
   8 ?    1.8   0.0      0.14   1.4e+02      17      89 ..    2746    2818 ..    2742    2823 .. 0.90
   9 ?   -0.9   0.0      0.97   9.2e+02      21      79 ..    2874    2932 ..    2869    2946 .. 0.75
  10 ?   -2.2   0.0       2.4   2.3e+03     112     151 ..    3133    3174 ..    3087    3184 .. 0.70
  11 ?    5.6   0.0      0.01       9.5      46     169 ..    3257    3378 ..    3216    3383 .. 0.72
  12 ?   -0.6   0.0      0.77   7.2e+02     139     176 ..    3385    3422 ..    3379    3429 .. 0.87
  13 ?    0.1   0.0      0.46   4.4e+02       8      91 ..    3461    3545 ..    3455    3554 .. 0.68
  14 ?    0.2   0.1      0.45   4.3e+02      14      57 ..    3557    3600 ..    3545    3651 .. 0.52
  15 ?    1.0   0.1      0.25   2.4e+02      33      91 ..    3665    3723 ..    3630    3732 .. 0.80
  16 ?    2.9   0.2     0.065        61      15      84 ..    3724    3792 ..    3718    3825 .. 0.72
  17 ?   -3.0   0.0       4.1   3.9e+03      74     180 ..    4103    4212 ..    4081    4214 .. 0.59
  18 ?    2.3   0.1       0.1        95      16     148 ..    4379    4510 ..    4367    4553 .. 0.72
  19 ?    1.8   0.0      0.15   1.4e+02      24      89 ..    4551    4617 ..    4530    4623 .. 0.82

  Alignments for each domain:
  == domain 1  score: 5.5 bits;  conditional E-value: 0.01
       Arm_2    7 evLepkelekllalLkssedpliqeialltlgnsa.aysvnqdiirdlggitiianllsksnaevkekalnalnnlsenvenqk 89  
                  +vL +k  e l++lL s    + qe a  tlg+ a   + +q+ i   ggi+ + nll   + +v+e+  +al +l   v +q+
  KOO24562.1 1745 DVLAAKAVEPLVKLLSS-GTACSQESAAATLGVLAlGKPDTQEAIVAAGGIGPLVNLLKMGSSKVQEQVASALAALDADVSHQQ 1827
                  789999999****9965.56778999999***98725799**************************998888887777766665 PP

  == domain 2  score: -0.3 bits;  conditional E-value: 0.64
       Arm_2   28 liqeialltlgnsaaysv.nqdiirdlggitiianllsksnaevk.ekalnaln 79  
                  + q  a  +l+n+aays  +q  i + g i+++ +ll + +a++    al  l 
  KOO24562.1 1848 AAQSFAAQALANAAAYSGeAQRNIASAGSIPLLLSLLGTGKAQKPaATALAKLA 1901
                  456677789*******9637999**************99877765466666665 PP

  == domain 3  score: 14.2 bits;  conditional E-value: 2.4e-05
       Arm_2   15 ekllalLkssedpliqeialltlgnsaaysvnqdiirdlggitiianllsksnae.vkekalnalnnlsenvenqkkikvyvnqvckdivssplNse 110 
                  + +++lL+ss+  + + +a   + +s     nq+++ dlg ++ + nl+ +sn e vk     a+  lse  e +    ++   ++    + ++ + 
  KOO24562.1 2002 KPIVQLLESSSTDVTSYAASALMEISRGNLPNQKTVVDLGAVGQLGNLIKTSNDErVKAEVAGAIWSLSETPEIKAMFGFCNAPLVTLLGMGSVRAR 2098
                  6789*********************************************999765277788889******************************999 PP

       Arm_2  111 vQlagLklltnlsvtneyqhllvsyisellsLLskGnekikvqvLkvllnlseNpamtrell.sakvlssllslfnkk 187 
                     ag   l +l   n+ + ++ +    l++LL +Gn++ +    k l  l + ++ ++e++ +a  ++ l++l ++ 
  KOO24562.1 2099 EHAAG--ALASLGLDNKANQVVLTQ--LLVELLINGNREAQERAVKALNALVKENTSAHEVIaQAGNPAQLVALLKSS 2172
                  99998..69***********99986..599********************9987777777662677788888887664 PP

  == domain 4  score: 13.9 bits;  conditional E-value: 3e-05
       Arm_2   16 kllalLkssedpliqeialltlgnsaaysvnqdiirdlggitiianllsksnaevkekalnalnnlsenvenqkkikvyvnqvckdivssplNse.. 110 
                  +l+alLkss+  + ++ al +l+ s     nq ii + gg+  + + ls+    +ke+a +al +l+  +e+ +   +    +   i +  lN++  
  KOO24562.1 2164 QLVALLKSSHLEA-KDYALWALSLSIE-KKNQSIISEAGGVQPLIQQLSDARVFIKEQAASALAKLAFENEETRASITECGGIQPLIKLLTLNAKen 2258
                  6888888776544.4556666655544.46***********999999******************99766665555444455555555555555321 PP

       Arm_2  111 ..vQlagLklltnlsvtneyqhllvs..yisellsLLskGnekikvqvLkvllnlseNpamtrells 173 
                      + g   l nl++ ++ +  +vs   i+ l+ +L    +k+k +  + l  ls+ +a t+  + 
  KOO24562.1 2259 pmARMYGADALANLATDSDARDEIVSagGIRPLVLVLEDEAQKTKKYAARALARLSKDHASTQAAIA 2325
                  12789999********9997765544126********************************998764 PP

  == domain 5  score: -0.5 bits;  conditional E-value: 0.71
       Arm_2   16 kllalLkssedpliqeialltlgnsaaysvnqdiirdlggitiianllsksnaevkekalnalnnlsenvenq 88  
                   l+alL+ +  p  qe a  +l   a +  n+  i + ggi+ +  ll  +n + +e+a  al  ls  + n 
  KOO24562.1 2332 LLVALLEGTFGPEAQEEAAGALFALADHEGNRVGITESGGIGWLVMLLGCNNRRAREHAEGALVRLSIENANR 2404
                  589*********************************************9999999999988888888655444 PP

  == domain 6  score: 2.9 bits;  conditional E-value: 0.067
       Arm_2   30 qeialltlgnsaays.vnqdiirdlggitiianllsksnaevkekalnalnnlsenvenqkk 90  
                  qe+a  +l+n a  s  n++ i d  gi+ + ++l + +a+ ke+a+ a+ +l  n++n++ 
  KOO24562.1 2456 QEQAAAALANLARESeDNRKSIVDANGIVPLLDILDSASAKAKENAVGAIKELCRNSKNNQA 2517
                  566666666665544147777888888888889***********************999865 PP

  == domain 7  score: 5.0 bits;  conditional E-value: 0.015
       Arm_2   45 vnqdiirdlggitiianllsksnaevkekalnalnnlsenv.enqkkikv..yvnqvckdivssplNsevQlagLklltnlsvtneyqhllvs..yi 136 
                   nqd i + g i  +  +l +++ +++ +a  al nl++n+ enq+ i     +  +c  +   +  ++ Q a+  l      +   +  +++   i
  KOO24562.1 2565 KNQDAIAEAGAIQPLVGMLGSPSSQMQANAAGALANLAQNHtENQSAIARtgAIAPLCTLMREGSEDTKDQCAAAILALATDHQG-NKDTIAKlgGI 2660
                  599*********99999*******************9999625666554322466667766666666666666543322222222.22333321246 PP

       Arm_2  137 sellsLLskGne.kikvqvLkvllnlseNpamtrell 172 
                    ll LL++G+  k +v+v   l  l++ +   r+l+
  KOO24562.1 2661 DPLLGLLVTGSTdKSQVYVAGALAALAAKHMDNRQLI 2697
                  6777777777642556777777777776666666666 PP

  == domain 8  score: 1.8 bits;  conditional E-value: 0.14
       Arm_2   17 llalLkssedpliqeialltlgnsaaysvnqdiirdlggitiianllsksnaevkekalnalnnlsenvenqk 89  
                  l++ L+s++  +   +a  +l+ +   + +q +i + + i+ + +l+ ks+ e +e a  al  +++ +en +
  KOO24562.1 2746 LITWLQSTTVTTQAAAAHAVLCLASDNATTQVFIAKSDAIPPLIALVAKSSVEAQEYATRALWHMASQEENRT 2818
                  7888999999999999*************************9999**********999999988888877765 PP

  == domain 9  score: -0.9 bits;  conditional E-value: 0.97
       Arm_2   21 Lkssedpliqeialltlgnsaaysvnqdiirdlggitiianllsksnaevkekalnaln 79  
                  L  s     q++a   l+  a  + n+di+ +  gi  i +lls++     e a  +l 
  KOO24562.1 2874 LVESGSAGSQQQAASCLSELALVPKNRDIVANAHGIQPIIALLSSPTIGTPETAARVLA 2932
                  44455555677777899999***********9999999999999988776666666665 PP

  == domain 10  score: -2.2 bits;  conditional E-value: 2.4
       Arm_2  112 QlagLklltnlsvtneyqhllvs..yisellsLLskGnekik 151 
                  Q  + + + +l+  +e + ++++   i++l++LL+ G+ k +
  KOO24562.1 3133 QEHAARAIWHLAALFEVHVIIIEagAIPDLVQLLKMGSPKAQ 3174
                  667778888999999999988763369999999999998876 PP

  == domain 11  score: 5.6 bits;  conditional E-value: 0.01
       Arm_2   46 nqdiirdlggitiianllsksnaevkekalnalnnls.envenqkkikvyvnqvckdivssplNsevQlagLklltnlsvtneyqhllvs...yise 138 
                    +i +  g+ +++ +++ +  ++ +++a nal  l+ +n++nq +i     + c   + ++ N+  Q  +  +l +l+  n    +++     is 
  KOO24562.1 3257 QLAIAKCSGISPMV-AIIDDGTEQAQKNAANALARLAtKNADNQMQIS----KYCVGLL-ANQNTGTQRRAACVLSDLARDNPGSPVVIVnagAISP 3347
                  44455555666666.589999999999999999987525777776665....5566654.56799**************9999887765312379** PP

       Arm_2  139 llsLLskGnekikvqvLkvllnlseNpamtr 169 
                  l++LLs G   +k +  + l+ l+ N   t+
  KOO24562.1 3348 LVNLLSGGAADVKEEAARALSTLALNSPSTQ 3378
                  ***********************99987765 PP

  == domain 12  score: -0.6 bits;  conditional E-value: 0.77
       Arm_2  139 llsLLskGnekikvqvLkvllnlseNpamtrellsakv 176 
                  l+ L+ +G+ + + +v ++ll ls+  ++   +++a +
  KOO24562.1 3385 LVVLVGTGSAESQEHVSQLLLTLSKDADNCVAIVRAGA 3422
                  6778899***********************99999976 PP

  == domain 13  score: 0.1 bits;  conditional E-value: 0.46
       Arm_2    8 vLepkelekllalLkssedpli..qeialltlgnsaaysvnqdiirdlggitiianllsksnaevkekalnalnnlsenvenqkki 91  
                  +L+++ ++ l+++L + +  +   + ++l  l+   + s   +i+ + g+++++a l  +s+   k  a +al  l +n+e  ++ 
  KOO24562.1 3461 ILSSNCIRPLVSMLTTGTAGAQaySAAVLAELARISNKS-STQIMSEGGIVPLVAMLGRESSSAAKASAASALRTLTSNTEGGSQA 3545
                  566666666666666544333200223333344444444.44699999*********9******************9999976655 PP

  == domain 14  score: 0.2 bits;  conditional E-value: 0.45
       Arm_2   14 lekllalLkssedpliqeialltlgnsaaysvnqdiirdlggit 57  
                  ++ l+alL   +d + +++a  + + s   +  qd +++  gi+
  KOO24562.1 3557 IRPLVALLSEEDDTIRKRAAGAIAALSVGMTEIQDAVEKNKGIG 3600
                  34455555555554444444444455555555555555544444 PP

  == domain 15  score: 1.0 bits;  conditional E-value: 0.25
       Arm_2   33 alltlgnsaaysvnqdiirdlggitiianllsksnaevkekalnalnnlsenv.enqkki 91  
                  al  l++ + +  nq  i + ggi+ + ++l  ++++ +e+a  al +l+ n+ en++ i
  KOO24562.1 3665 ALWSLCIGKHH-ENQVAIANAGGIAPLVAVLGLTSEKAREQAAGALAALALNNtENEEAI 3723
                  67778887766.5888888888888888899999999**999999999986651555554 PP

  == domain 16  score: 2.9 bits;  conditional E-value: 0.065
       Arm_2   15 ekllalLkssedpliqeialltlgn.saaysvnqdiirdlggitiianllsksnaevkekalnalnnlsen 84  
                  ++l+  L  sed   + +a l+++  + a + nq  i + ggi ++ +ll+ ++a+  +k  +  n +s++
  KOO24562.1 3724 AQLIVSLLGSEDKQASAKAALAVSRfARANASNQRSIAKAGGIELLVSLLNVEDARAAPKEHS--NSSSHS 3792
                  566666777788888888888887526799************************999888766..544444 PP

  == domain 17  score: -3.0 bits;  conditional E-value: 4.1
       Arm_2   74 alnalnnlsenvenqkkikv.yvnqvckdivssplNsevQlagLklltnls.vtneyqhl.lvsyisellsLLskGnekikvqvLkvllnlseNpam 167 
                  al  l + s+   ++  +++ +++ +++   + +l +  Q  +  +l  l+ +  + + + l++ i+ l+ LLs Gn   k +    l  l+    +
  KOO24562.1 4103 ALRSLLAISDTISREAIVEAgCIEALIESLRLRKLSAVAQEHAAAVLSGLApIGMNAKAIkLAKGIEPLVVLLSDGNADAKEHAADCLAQLARRASA 4199
                  5555555555555555554335555555555555555555555555555542333333333667788888888888888887777777777777766 PP

       Arm_2  168 trellsakvlssl 180 
                    e+  a + s++
  KOO24562.1 4200 SLEIAAAGAVSAF 4212
                  6666666666665 PP

  == domain 18  score: 2.3 bits;  conditional E-value: 0.1
       Arm_2   16 kllalLkssedpliqeialltlgnsaaysvnqdiirdlggitiianllsksnaevkekalnalnnlsenvenqkkikvyvnqvckdivssplNsevQ 112 
                   l+alL s +  + q +a    + +  ++ nq  + + g i+ + ++l + +a  +e+a+ al   s +++++++ ++ v++++    + +  +++ 
  KOO24562.1 4379 PLVALLASESGTTQQYAAAALQSLARDHTENQIALTKAGAIAPLVDILGSDSADTQEHAVGALL--SLASHDVNSRNAVVKKLIAVLELRSATAQMN 4473
                  578888776666666666666678899**************9999****************996..7777777888888888776665555544444 PP

       Arm_2  113 l.agLklltnlsvtneyqhllvsyisellsLLskGne 148 
                    ++L +l   s +n      ++ i+ l++LL  G +
  KOO24562.1 4474 AaEALAVLAARSEENRKAITAANAIEPLVRLLGDGRR 4510
                  3146888888888888888899999999999999964 PP

  == domain 19  score: 1.8 bits;  conditional E-value: 0.15
       Arm_2   24 sedpl.iqeialltlgnsaaysvnqdiirdlggitiianllsksnaevkekalnalnnlsenvenqk 89  
                  s+d++  q  a  +l   aa   n+ +i + g i+ +  lls+s+ e ++ a  al  l++++e + 
  KOO24562.1 4551 SSDSVaTQTYASGALWQLAALGTNKTTIAEAGAIPPLVTLLSSSSTETHKCAAGALWHLASSAESKI 4617
                  3444414556777888899999****************************99999999888887765 PP

>> ABC1  ABC1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.7   0.0   3.3e-15   3.1e-12       7     105 ..    1186    1293 ..    1183    1299 .. 0.85

  Alignments for each domain:
  == domain 1  score: 46.7 bits;  conditional E-value: 3.3e-15
        ABC1    7 leeiFaefdeePiAaASiaqVhrAklks.geeVavKvqrpgvkkriksDlellkllakllkk..flkelr......ldleelvdefskslleEldfe 94  
                   +e+ a + e+P AaAS++qV+r +l+s  + Va+K  rpg +++i+ D  l + +a +l++  +++           l + vdef ++l+eE+d+ 
  KOO24562.1 1186 ADEVLAALPERPAAAASLGQVYRLSLPSyASPVALKLLRPGARETIAMDSLLARAAAGWLQSlrWPPTASgarllkPALVAAVDEFFSRLFEEMDYA 1282
                  578899999******************64889***************************99622455444544644568899*************** PP

        ABC1   95 rEAknaekfre 105 
                  +E +n  kf  
  KOO24562.1 1283 NERANLAKFGA 1293
                  *****999965 PP

>> DUF5578  Family of unknown function (DUF5578)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.0         3   2.8e+03      10      25 ..     541     556 ..     538     559 .. 0.82
   2 ?    0.2   0.1      0.42   3.9e+02     164     250 ..    1723    1820 ..    1709    1835 .. 0.68
   3 ?   -1.4   0.0       1.4   1.3e+03     161     226 ..    1805    1874 ..    1785    1921 .. 0.63
   4 !    6.0   0.3    0.0075       7.1     164     251 ..    1931    2028 ..    1875    2041 .. 0.71
   5 ?    5.3   0.1     0.012        11     151     255 ..    2045    2151 ..    2041    2171 .. 0.83
   6 ?    0.1   0.2      0.45   4.3e+02     163     250 ..    2133    2228 ..    2132    2240 .. 0.72
   7 ?   -2.0   0.0         2   1.9e+03     209     253 ..    2463    2512 ..    2452    2526 .. 0.63
   8 ?    0.4   0.0      0.38   3.6e+02     127     266 ..    2554    2705 ..    2521    2707 .. 0.58
   9 ?   -0.1   0.0      0.54   5.1e+02     118     256 ..    2629    2775 ..    2614    2782 .. 0.68
  10 ?    1.8   0.1      0.14   1.4e+02     160     206 ..    2836    2887 ..    2747    2955 .. 0.51
  11 ?   -3.9   0.0       7.6   7.2e+03     190     209 ..    3162    3181 ..    3161    3185 .. 0.86
  12 !   12.3   0.0   8.8e-05     0.083     161     265 ..    3277    3388 ..    3259    3391 .. 0.83
  13 ?    3.3   0.3     0.047        45     148     266 ..    3598    3731 ..    3561    3733 .. 0.74
  14 ?    0.8   0.1      0.29   2.7e+02     190     248 ..    3690    3748 ..    3659    3769 .. 0.85
  15 !   15.9   0.5   6.9e-06    0.0065     150     253 ..    3955    4062 ..    3950    4070 .. 0.86
  16 !   13.6   0.4   3.4e-05     0.032     190     267 ..    4380    4464 ..    4376    4465 .. 0.82
  17 !   11.1   0.1    0.0002      0.19     159     230 ..    4428    4504 ..    4422    4538 .. 0.83
  18 ?   -0.9   0.0      0.95     9e+02     102     179 ..    4622    4696 ..    4544    4705 .. 0.68

  Alignments for each domain:
  == domain 1  score: -2.6 bits;  conditional E-value: 3
     DUF5578  10 isrllsllqeWDkadk 25 
                   r+l+ll+ WDk+ +
  KOO24562.1 541 SLRMLDLLRSWDKSGS 556
                 569*********9865 PP

  == domain 2  score: 0.2 bits;  conditional E-value: 0.42
     DUF5578  164 tqeeaqklleslaegn.....Pk.yqkqvykgliallacsspkaqqlalqtlrvvqeivkeakpsive.....pllelLkslhlevqyeaielikel 249 
                  ++++a + l+sla+ n     P+ +  +  + l+ ll++ +  +q  a+ tl v+    ++++ +iv      pl++lLk   ++vq ++ + + +l
  KOO24562.1 1723 VRDHAAAQLRSLATQNhgqnqPDvLAAKAVEPLVKLLSSGTACSQESAAATLGVLALGKPDTQEAIVAaggigPLVNLLKMGSSKVQEQVASALAAL 1819
                  4444444444443333111126524556778899999999999999999999999999888888887533333799999999999999998888777 PP

     DUF5578  250 m 250 
                   
  KOO24562.1 1820 D 1820
                  5 PP

  == domain 3  score: -1.4 bits;  conditional E-value: 1.4
     DUF5578  161 seetqeeaqklleslaegnPkyqkqvykg.....liallacsspkaqqlalqtlrvvqeivkeakpsivep 226 
                  s+++qe++ + l  l     + q+ + k+     l+a+++  s  aq +a+q+l  +    +ea+++i ++
  KOO24562.1 1805 SSKVQEQVASALAALDADVSH-QQGIIKAgaippLVAIVKGGSGAAQSFAAQALANAAAYSGEAQRNIASA 1874
                  555555555555554433322.2222221123338899999999999999999999999999999888653 PP

  == domain 4  score: 6.0 bits;  conditional E-value: 0.0075
     DUF5578  164 tqeeaqklleslaegnPkyqkqv.....ykgliallacsspkaqqlalqtlrvvqeivke.....akpsivepllelLkslhlevqyeaielikelm 250 
                  +q +a + l ++a  n + q  +     +  l+all+++s  aq  ++ +l  + ++ ++     a++  ++p+++lL+s  ++v + a + + e+ 
  KOO24562.1 1931 AQVAAAEALAEIADDNTETQAAIakagcFGPLLALLSSRSASAQSKSMAALAQLTRHNRDnqdavARMGGIKPIVQLLESSSTDVTSYAASALMEIS 2027
                  455566666677777777666551122255699****999999999998888776655441111144667999**********99988877777665 PP

     DUF5578  251 s 251 
                  +
  KOO24562.1 2028 R 2028
                  5 PP

  == domain 5  score: 5.3 bits;  conditional E-value: 0.012
     DUF5578  151 avaeclakskseetqeeaqklleslaegnPkyqkqv...ykgliallacsspkaqqlalqtlrvvqeivkeakpsivepllelLkslhlevqyeaie 244 
                  ++++++ +s+ e++++e+   ++sl+e  P+ + +       l++ll   s +a+  a+ +l ++    k+ +  + + l+elL + + e q  a++
  KOO24562.1 2045 QLGNLIKTSNDERVKAEVAGAIWSLSET-PEIKAMFgfcNAPLVTLLGMGSVRAREHAAGALASLGLDNKANQVVLTQLLVELLINGNREAQERAVK 2140
                  6788899999999999999999999875.88887643225679****************************************************** PP

     DUF5578  245 likelmstevr 255 
                   +++l++++ +
  KOO24562.1 2141 ALNALVKENTS 2151
                  ****9976443 PP

  == domain 6  score: 0.1 bits;  conditional E-value: 0.45
     DUF5578  163 etqeeaqklleslaegnPkyqkqvyk.....gliallacsspkaqqlalqtlrvvqeivkeak...psivepllelLkslhlevqyeaielikelm 250 
                  e+qe+a k l+ l++ n + ++ + +     +l+all++s  +a+ +al +l +  e+ +++       v+pl++ L+ + + ++ +a + + +l+
  KOO24562.1 2133 EAQERAVKALNALVKENTSAHEVIAQagnpaQLVALLKSSHLEAKDYALWALSLSIEKKNQSIiseAGGVQPLIQQLSDARVFIKEQAASALAKLA 2228
                  5677777778888888877776665422222699****9999*****9988887666555543122668999999999999999999999888886 PP

  == domain 7  score: -2.0 bits;  conditional E-value: 2
     DUF5578  209 lrvvqeivkeakpsive.....pllelLkslhlevqyeaielikelmste 253 
                  l  + +  ++ ++siv+     pll++L s+  + + +a+  ikel +  
  KOO24562.1 2463 LANLARESEDNRKSIVDangivPLLDILDSASAKAKENAVGAIKELCRNS 2512
                  55555555555555544222226888888888898999999898888654 PP

  == domain 8  score: 0.4 bits;  conditional E-value: 0.38
     DUF5578  127 kllqlvanaGrkyKEliCEsygvravaeclakskseetqeeaqklleslaegnPkyqkqvykg.....liallacsspkaq.qlalqtlrvvqeivk 217 
                    lq +a++ rk ++ i E+  ++ +  +l  s s++ q++a   l +la++  + q+ + ++     l +l+   s  ++ q a+  l ++ ++ +
  KOO24562.1 2554 DALQEMAKGNRKNQDAIAEAGAIQPLVGMLG-SPSSQMQANAAGALANLAQNHTENQSAIARTgaiapLCTLMREGSEDTKdQCAAAILALATDHQG 2649
                  4577788888888888888888888877775.55666677777777777777777666654322222244555555555441444443443333322 PP

     DUF5578  218 e....akpsivepllelLkslhle.vqyeaielikelm..stevraallkglvalL 266 
                  +    ak   ++pll lL +  ++  q  +   + +l+  +++ r+ + k+lv lL
  KOO24562.1 2650 NkdtiAKLGGIDPLLGLLVTGSTDkSQVYVAGALAALAakHMDNRQLIAKRLVGLL 2705
                  21111345567777777765544312333333444443225566777777777776 PP

  == domain 9  score: -0.1 bits;  conditional E-value: 0.54
     DUF5578  118 keedkaealkllqlvanaGrkyKEliCEsygvravaeclakskseetqeeaqklleslaegnPkyqkqvykgliallacs....spkaqqlalqtlr 210 
                  +e+ k +    +  +a   +  K++i    g+  +  +l + +++++q ++   l  la    + ++ + k l++ll +s    + +a+++  +t  
  KOO24562.1 2629 SEDTKDQCAAAILALATDHQGNKDTIAKLGGIDPLLGLLVTGSTDKSQVYVAGALAALAAKHMDNRQLIAKRLVGLLGSSavrtADRAERVL-NTCS 2724
                  45556666666666777777788888888888888899999999999999999999999988888888888888888777222233333332.2222 PP

     DUF5578  211 .....vvqeivkeakpsivepllelLkslhlevqyeaielikelmstevra 256 
                       ++ ++v+ ak   + pl++ L+s+ +  q++a + +  l+s + ++
  KOO24562.1 2725 sfasdSAANQVGLAKLGGIPPLITWLQSTTVTTQAAAAHAVLCLASDNATT 2775
                  000112344556667777889999999999999988888888777766655 PP

  == domain 10  score: 1.8 bits;  conditional E-value: 0.14
     DUF5578  160 kseetqeeaqklleslaegnPkyqkqvykg.....liallacsspkaqqlal 206 
                  + + + e a ++l  la+gn + + q+  +     l+ l+++ s  +qq a+
  KOO24562.1 2836 EGDVAAELAAIILVRLARGNTEVSIQIAAQggvlpLVRLVESGSAGSQQQAA 2887
                  3344444455555555555555555543322222244444555555555544 PP

  == domain 11  score: -3.9 bits;  conditional E-value: 7.6
     DUF5578  190 liallacsspkaqqlalqtl 209 
                  l+ ll+  spkaq +a+ +l
  KOO24562.1 3162 LVQLLKMGSPKAQEMAAAAL 3181
                  7889999********99877 PP

  == domain 12  score: 12.3 bits;  conditional E-value: 8.8e-05
     DUF5578  161 seetqeeaqklleslaegnPkyqkqvykgliallacsspkaqqlalqtlrvvqeivkeakpsi.....vepllelLkslhlevqyeaielikelmst 252 
                  +e++q++a + l  la+ n + q+q+ k  ++lla +   +q+ a+  l  + +  + ++  i     ++pl++lL+    +v+ ea + +++l+  
  KOO24562.1 3277 TEQAQKNAANALARLATKNADNQMQISKYCVGLLANQNTGTQRRAACVLSDLARDNPGSPVVIvnagaISPLVNLLSGGAADVKEEAARALSTLALN 3373
                  6899********************************99999999999998888887776665511111679********************999844 PP

     DUF5578  253 ..evraallkglval 265 
                      + a+ +glv l
  KOO24562.1 3374 spSTQLAIASGLVVL 3388
                  236777888888877 PP

  == domain 13  score: 3.3 bits;  conditional E-value: 0.047
     DUF5578  148 gvravaeclakskseetqeeaqklleslaegnPkyqkqv.....ykgliallacs.....spkaqqlalqtlrvvq...eivkeakpsivepllelL 231 
                  g+ ++  +la+s  ee+ +ea + l  la++n k q+++      + li+ll+++     +++a   al +l++ +   ++v  a+   + pl+++L
  KOO24562.1 3598 GIGKLVSLLASSVHEEVSAEAAAALAVLAHNNKKNQDKLasdggIEPLISLLNTEgggdyAKEASASALWSLCIGKhheNQVAIANAGGIAPLVAVL 3694
                  67778899**************************999983222235699999987664444555566666666654111455667778889999998 PP

     DUF5578  232 kslhlevqyeaielikelm..stevraallkglvalL 266 
                    +  + + +a   + +l+  +te ++a+ + +v+lL
  KOO24562.1 3695 GLTSEKAREQAAGALAALAlnNTENEEAIAQLIVSLL 3731
                  8888888887777777665326677778888888877 PP

  == domain 14  score: 0.8 bits;  conditional E-value: 0.29
     DUF5578  190 liallacsspkaqqlalqtlrvvqeivkeakpsivepllelLkslhlevqyeaielike 248 
                  l+a+l  +s ka+  a+ +l  +     e + +i + +++lL s + +  ++a   ++ 
  KOO24562.1 3690 LVAVLGLTSEKAREQAAGALAALALNNTENEEAIAQLIVSLLGSEDKQASAKAALAVSR 3748
                  88999999999999999999999999999999999999999999988888777655555 PP

  == domain 15  score: 15.9 bits;  conditional E-value: 6.9e-06
     DUF5578  150 ravaeclakskseetqeeaqklleslaegnPkyqkqvykg.....liallacsspkaqqlalqtlrvvqeivkeakpsivepllelLkslhlevqye 241 
                  +ava + a+  s ++ e++ +ll++la+ +P+ ++ + k+     l+  l+c s k+  +a+q l ++  +  e++ ++ + l++lL+s +  v++ 
  KOO24562.1 3955 EAVAMLKAHGDSPKAAEHVTQLLRNLAK-DPENRSAIAKAgavpdLVRQLECGSDKSMSMAAQGLALIALKSAETHATVTQELVKLLASDKAAVRQR 4050
                  567778889999999*********9987.577777776643444499************************************************** PP

     DUF5578  242 aielikelmste 253 
                  a e + ++++ +
  KOO24562.1 4051 ASEALTDMAADD 4062
                  ****99998665 PP

  == domain 16  score: 13.6 bits;  conditional E-value: 3.4e-05
     DUF5578  190 liallacsspkaqqlalqtlrvvqe.....ivkeakpsivepllelLkslhlevqyeaielikelmstev..raallkglvalLk 267 
                  l+alla++s ++qq+a+ +l+++ +     ++  +k   + pl+++L s   + q +a+  + +l+s++v  r+a++k+l+a+L+
  KOO24562.1 4380 LVALLASESGTTQQYAAAALQSLARdhtenQIALTKAGAIAPLVDILGSDSADTQEHAVGALLSLASHDVnsRNAVVKKLIAVLE 4464
                  89*************99999887651111144455677899*************************9998445789*****9985 PP

  == domain 17  score: 11.1 bits;  conditional E-value: 0.0002
     DUF5578  159 skseetqeeaqklleslaegnPkyqkqvykgliallacsspkaqqlalqtlrvvqeivkeakpsi.....vepllel 230 
                  s s+ tqe+a   l sla+ + + ++ v k lia+l+ +s +aq  a+++l v+  + +e +++i     +epl+ l
  KOO24562.1 4428 SDSADTQEHAVGALLSLASHDVNSRNAVVKKLIAVLELRSATAQMNAAEALAVLAARSEENRKAItaanaIEPLVRL 4504
                  78999******999***************************************998888766554111115555555 PP

  == domain 18  score: -0.9 bits;  conditional E-value: 0.95
     DUF5578  102 iGGvltlleilglkqlkeedkaealkllqlvanaGrkyKEliCEsygvravaeclakskseetqeeaqklleslaegn 179 
                   G +  l+++l+ k  + +  ++a  +l+ +a +    K +i  +  +r +  +l+  k++ tq++a   l+ l+ gn
  KOO24562.1 4622 AGAIPLLVQVLSSKSGEAR--EHAAAVLSALARSLGTNKKIIYHAGAIRPLIVLLT-DKRSMTQRHAACCLWALSDGN 4696
                  4555555666655554443..34444567777766666777777767776665444.455567777777777777776 PP

>> Adaptin_N  Adaptin N terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.0       2.4   2.3e+03     116     172 ..    1709    1770 ..    1702    1789 .. 0.45
   2 !    5.9   0.0    0.0041       3.8     194     280 ..    1959    2055 ..    1889    2090 .. 0.48
   3 !    7.6   0.2    0.0012       1.2     358     492 ..    2099    2236 ..    2092    2280 .. 0.76
   4 ?    2.0   0.4     0.063        59     133     187 ..    2458    2519 ..    2453    2820 .. 0.69
   5 ?   -3.1   0.0       2.2   2.1e+03     131     185 ..    2883    2940 ..    2870    2954 .. 0.71
   6 ?    4.0   0.0     0.016        15     355     415 ..    3279    3339 ..    3266    3404 .. 0.77
   7 !    9.3   0.0   0.00039      0.37     352     514 ..    3567    3743 ..    3557    3753 .. 0.79
   8 ?    2.4   0.1     0.047        44     453     517 ..    3974    4055 ..    3932    4070 .. 0.57
   9 ?    2.8   0.2     0.037        35     356     415 ..    4433    4492 ..    4413    4524 .. 0.77
  10 ?   -2.6   0.0       1.6   1.5e+03     115     179 ..    4583    4650 ..    4548    4663 .. 0.65
  11 ?    0.4   0.0      0.19   1.8e+02     118     219 ..    4669    4776 ..    4632    4788 .. 0.74

  Alignments for each domain:
  == domain 1  score: -3.2 bits;  conditional E-value: 2.4
                  HHHHHHHHT-SSHHHHHHHHHHHHHCCCC.....CHHCCCCCHHHHHHHCTT-SSHHHHHHH CS
   Adaptin_N  116 apaikkllkdrspyvrkkAalailklykk.....dpdllrkqlveeikellsdkdpgvvlaA 172 
                  a+ + + ++  ++ vr  Aa  +  l  +     +pd l  + ve +++lls+ +   + +A
  KOO24562.1 1709 ARNLVAEITTGNSEVRDHAAAQLRSLATQnhgqnQPDVLAAKAVEPLVKLLSSGTACSQESA 1770
                  44444444444444444444444444444222222232222224444444444444444444 PP

  == domain 2  score: 5.9 bits;  conditional E-value: 0.0041
                  HCCHHHHHHCS-HHHHHHHHHHHCC---SSHHHH.....HHHHHHHCGGCGCSSCHHHHHHHHHCC.....HCCCCSTHHHC.CHHCHHHHHH.SSC CS
   Adaptin_N  194 vrrLcnllteldpwlqvkiiklltrlarqepeersk...kellesllnllqssnnaVlletvnliv.....elapknelivl.avnaLvrlls.skd 280 
                  +  L  ll++ +  +q k    l +l+r++ + ++       ++ + +ll+ss++ V   ++ +++     +l+++ +++ l av +L+ l++ s+d
  KOO24562.1 1959 FGPLLALLSSRSASAQSKSMAALAQLTRHNRDNQDAvarMGGIKPIVQLLESSSTDVTSYAASALMeisrgNLPNQKTVVDLgAVGQLGNLIKtSND 2055
                  4445555555555555555555555555555555443323334444444445555555555555553333333333332222244555555554555 PP

  == domain 3  score: 7.6 bits;  conditional E-value: 0.0012
                  HHHHHHHHHHHHHSCCHHHHHHHHHHHHHTTXXHHHHHHHHHHHHHHHHHSTTTSTTCHH.....HHCCTCCGXXSHHHHHHHHHHHHHTTTTXTT. CS
   Adaptin_N  358 sklvkaIgrlaekfatdaewvldvllellslsgesvkdeivevirdliqkvpelheeiie.....kLaellekieseearaaaiWllGeygelvsnt 449 
                  + ++ a+++l+   + ++    + l+ell + +  +++ +v+++  l++++ + he i++     +L++ll+  ++ ea+  a+W l    e+  ++
  KOO24562.1 2099 EHAAGALASLGLDNKANQVVLTQLLVELLINGNREAQERAVKALNALVKENTSAHEVIAQagnpaQLVALLK-SSHLEAKDYALWALSLSIEKKNQS 2194
                  566677888888888888888999********************************9965222226666664.789999********9999998872 PP

                  ...HHHHHHCTTTTTTTSXHHHHHHHHHHHHHHHHCXGCC.THX CS
   Adaptin_N  450 e.sasdllrslaekfvlesekvklqiltalvKlyltspdketqe 492 
                    s +  ++ l+++++++ + +k q+ +al+Kl   ++  et+ 
  KOO24562.1 2195 IiSEAGGVQPLIQQLSDARVFIKEQAASALAKLAFENE--ETRA 2236
                  23333456778888888888888888888888886654..3333 PP

  == domain 4  score: 2.0 bits;  conditional E-value: 0.063
                  HHHHHHHHCCCCCHHCCCCC.H.HHHHHHCT...T-SSHHHHHHHHHHHHHH...HCCCCCCC CS
   Adaptin_N  133 kAalailklykkdpdllrkq.l.veeikell...sdkdpgvvlaAvalleei...kkndrlll 187 
                  +Aa a++ l + ++d  rk  + ++ i+ ll   ++ + + + +Av +++e+    kn+++l+
  KOO24562.1 2458 QAAAALANLARESEDN-RKSiVdANGIVPLLdilDSASAKAKENAVGAIKELcrnSKNNQALV 2519
                  4555666666665555.3333333333333333266666666666666666654433333333 PP

  == domain 5  score: -3.1 bits;  conditional E-value: 2.2
                  HHHHHHHH..HHCCCCCHHCCCCC.HHHHHHHCTT-SSHHHHHHHHHHHHHHHCCCCC CS
   Adaptin_N  131 rkkAalai..lklykkdpdllrkq.lveeikellsdkdpgvvlaAvalleeikkndrl 185 
                  +++Aa ++  l+l+ k+ d++ +   ++ i+ lls+ ++g   +A  +l ++ ++d +
  KOO24562.1 2883 QQQAASCLseLALVPKNRDIVANAhGIQPIIALLSSPTIGTPETAARVLARLAHEDPS 2940
                  5666666622566778999998887799999999999999999999999888555554 PP

  == domain 6  score: 4.0 bits;  conditional E-value: 0.016
                  HHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHTTXXHHHHHHHHHHHHHHHHHSTTTSTTC CS
   Adaptin_N  355 dfksklvkaIgrlaekfatdaewvldvllellslsgesvkdeivevirdliqkvpelheei 415 
                  +  + +++a++rla+k a+++ ++ +  + ll ++++++++ ++ v+ dl + +p +   i
  KOO24562.1 3279 QAQKNAANALARLATKNADNQMQISKYCVGLLANQNTGTQRRAACVLSDLARDNPGSPVVI 3339
                  3556677778888888888888888888888888888888888888888877777665444 PP

  == domain 7  score: 9.3 bits;  conditional E-value: 0.00039
                  XXHHHHHHHHHHHHHHHHHS.....CCHHHHHHHHHHHHHTTXX.HHHHHHHHHHHHHHHHHSTTTSTTC.....HHHHCCTCCG....XXSHHHHH CS
   Adaptin_N  352 adedfksklvkaIgrlaekf.....atdaewvldvllellslsg.esvkdeivevirdliqkvpelheei.....iekLaellek....ieseeara 433 
                   d  ++++++ aI+ l++ +     a ++++ +  l+ ll +s  e v++e+++++  l +++++++++      ie L+ ll++       +ea a
  KOO24562.1 3567 EDDTIRKRAAGAIAALSVGMteiqdAVEKNKGIGKLVSLLASSVhEEVSAEAAAALAVLAHNNKKNQDKLasdggIEPLISLLNTegggDYAKEASA 3663
                  355599999999999999888866655666666667777766544899******************99988888899********999866667888 PP

                  HHHH..HHHHTTTTXTT...HHHHHHCTTTTTTTSXHHHHHHHHHHHHHHHHCXGCC.THXHHHHHHHHHHHXXSHHHHHHHH CS
   Adaptin_N  434 aaiW..llGeygelvsntesasdllrslaekfvlesekvklqiltalvKlyltspdketqekliqlvlslatssdlevrdRav 514 
                  +a+W  ++G++ e+   + + +  +  l  ++ l+sek++ q+  al+ l l++   e++e + ql+ sl+ s+d     +a 
  KOO24562.1 3664 SALWslCIGKHHENQVAIAN-AGGIAPLVAVLGLTSEKAREQAAGALAALALNNT--ENEEAIAQLIVSLLGSEDKQASAKAA 3743
                  88888899**9999887222.34577788999999*************9999997..56679999999999988888777776 PP

  == domain 8  score: 2.4 bits;  conditional E-value: 0.047
                  HHHHHCTTTTTTTSXHHHHHHHHHHHHHHHHCXGCC.THX.................HHHHHHHHHHHXXSHHHHHHHHHHH CS
   Adaptin_N  453 sdllrslaekfvlesekvklqiltalvKlyltspdketqe.................kliqlvlslatssdlevrdRaveyl 517 
                  ++llr la+ + + s+++k+ ++  lv+  +  +dk+                     ++q + +l+ s++  vr+Ra e l
  KOO24562.1 3974 TQLLRNLAKDPENRSAIAKAGAVPDLVRQLECGSDKSMSMaaqglalialksaethaTVTQELVKLLASDKAAVRQRASEAL 4055
                  5555555555555555555555555555554443333322334444444444444445555555555555555555555443 PP

  == domain 9  score: 2.8 bits;  conditional E-value: 0.037
                  HHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHTTXXHHHHHHHHHHHHHHHHHSTTTSTTC CS
   Adaptin_N  356 fksklvkaIgrlaekfatdaewvldvllellslsgesvkdeivevirdliqkvpelheei 415 
                    + +v a+ +la+  +++ + v++ l+ +l+l++ +++  ++e++  l  + +e+++ i
  KOO24562.1 4433 TQEHAVGALLSLASHDVNSRNAVVKKLIAVLELRSATAQMNAAEALAVLAARSEENRKAI 4492
                  467788888888888888888888888888888888888888888888888888887765 PP

  == domain 10  score: -2.6 bits;  conditional E-value: 1.6
                  HHHHHHHHHT-SSHHHHHHHHHHHHHCCCCCHHCCCCC.H..HHHHHHCTT-SSHHHHHHHHHHHHHH CS
   Adaptin_N  115 lapaikkllkdrspyvrkkAalailklykkdpdllrkq.l..veeikellsdkdpgvvlaAvalleei 179 
                    p + +ll+++s+   k Aa a+ +l ++ ++ +++     ++ +++ ls+k+     +A a+l  +
  KOO24562.1 4583 AIPPLVTLLSSSSTETHKCAAGALWHLASSAESKIQMGdAgaIPLLVQVLSSKSGEAREHAAAVLSAL 4650
                  56677778888888888888888888888866666544333366677777777666666666655554 PP

  == domain 11  score: 0.4 bits;  conditional E-value: 0.19
                  HHHHHHT-SSHHHHHHHHHHHHHCCCC....CHHCCCCC.HHHHHHHCTT-SSHHHHHHHHHHHHHHHCCCCCCCHHHHHH..HCCHHHHHHCS-HH CS
   Adaptin_N  118 aikkllkdrspyvrkkAalailklykk....dpdllrkq.lveeikellsdkdpgvvlaAvalleeikkndrlllkllpkl..vrrLcnllteldpw 207 
                   +  ll+d++++ ++ Aa+++ +l +     + +++ +   ++ +++ l ++d+   + A a+l  i + d+ +  ++++   +  L  l   +  w
  KOO24562.1 4669 PLIVLLTDKRSMTQRHAACCLWALSDGnegvYDKAIAEGgAIPLLIKMLLEDDTETRGFAAAALLCI-CRDKTAHPAIKDSggIDALLALSFGPPTW 4764
                  5667899******************995555444555555678888888777766666666666666.66666554554431144444455777778 PP

                  HHHHHHHHHCC- CS
   Adaptin_N  208 lqvkiiklltrl 219 
                  l + ++++lt l
  KOO24562.1 4765 LRAQVVEMLTLL 4776
                  888888887765 PP

>> KAP  Kinesin-associated protein (KAP)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.3   0.0    0.0012       1.1     321     480 ..    1989    2153 ..    1978    2163 .. 0.74
   2 ?    0.2   0.0      0.17   1.6e+02     353     401 ..    2267    2317 ..    2184    2337 .. 0.73
   3 ?    0.3   0.0      0.15   1.4e+02     353     446 ..    2763    2858 ..    2727    2873 .. 0.74
   4 !    6.3   0.0    0.0023       2.2     336     527 ..    3385    3591 ..    3371    3656 .. 0.65
   5 ?    3.9   0.0     0.012        11     316     424 ..    4526    4636 ..    4519    4673 .. 0.58

  Alignments for each domain:
  == domain 1  score: 7.3 bits;  conditional E-value: 0.0012
         KAP  321 venkdemaeldiveklaklvqsehedllnitlklllnlsfdtglrrk.mi...kvgllpklvalladdkhklialkvlyhvslddkvksmftytdc. 412 
                   +n+d +a +  ++ +++l++s+ +d+   +   l+++s      +k ++   +vg l +l++  +d++ k  +   ++ +s    +k+mf + +  
  KOO24562.1 1989 RDNQDAVARMGGIKPIVQLLESSSTDVTSYAASALMEISRGNLPNQKtVVdlgAVGQLGNLIKTSNDERVKAEVAGAIWSLSETPEIKAMFGFCNAp 2085
                  589999*********************************8665555525522234555555555567777777778899************998762 PP

         KAP  413 iqmlmkallesldekvdlelialcinlalnkrn.aqlive..gnglkllmkralkfkdalllkllrnlsqh 480 
                  +  l+ +    + e+    l +l+++  +n+   +ql+ve   ng +   +ra+k  +al+     n s h
  KOO24562.1 2086 LVTLLGMGSVRAREHAAGALASLGLDNKANQVVlTQLLVEllINGNREAQERAVKALNALVK---ENTSAH 2153
                  44555666666777788889999998888876426888884447778888999988777753...355555 PP

  == domain 2  score: 0.2 bits;  conditional E-value: 0.17
         KAP  353 klllnlsfdtglrrkmikvgllpklvalladd..khklialkvlyhvsldd 401 
                    l nl+ d++ r+ ++ +g +  lv +l+d+  k k+ a + l  +s d 
  KOO24562.1 2267 DALANLATDSDARDEIVSAGGIRPLVLVLEDEaqKTKKYAARALARLSKDH 2317
                  5688******************99*****9982245677888888888875 PP

  == domain 3  score: 0.3 bits;  conditional E-value: 0.15
         KAP  353 klllnlsfdtglrrkmi.kvgllpklvalladdk..hklialkvlyhvslddkvksmftytdciqmlmkallesldekvdlelialcinlalnkrna 446 
                  + +l l+ d    + +i k   +p l+al+a+     ++ a + l+h++ ++  +++++++  i+ l+ +l    d+  +l  i l + la  + ++
  KOO24562.1 2763 HAVLCLASDNATTQVFIaKSDAIPPLIALVAKSSveAQEYATRALWHMASQEENRTLIANAGAIKPLIGMLAAEGDVAAELAAIIL-VRLARGNTEV 2858
                  5677777777777766624578999****9987511578999*****************************999999999887766.4455444433 PP

  == domain 4  score: 6.3 bits;  conditional E-value: 0.0023
         KAP  336 laklvqsehedllnitlklllnlsfdtglrrkmikvgllpklvalladd.k....hklialkvlyhvs.lddkvksmftytdciqmlmkalleslde 426 
                  l+ lv +   +  +   +lll ls d++    ++++g +p+lv+ l          +++a  vl  ++  +d ++++++ ++ci+ l+ +l   +  
  KOO24562.1 3385 LVVLVGTGSAESQEHVSQLLLTLSKDADNCVAIVRAGAVPRLVVQLRGGgStsaiAQELAAAVLACLAaTEDGIRGILS-SNCIRPLVSMLTTGTAG 3480
                  555555555555666679************************9888543131111456778888877526899999986.79******999876655 PP

         KAP  427 kvdlelialcinla..lnkrnaqlivegngl...kllmkralkfkdalllkllrnl.sqhdgslklqfidyvgdlari.....lkesddeelvvecl 512 
                         a+  +la   nk  +q++ eg  +    +l + +     a     lr l s+ +g +++ + + v+d  +i     l  ++d+ +   + 
  KOO24562.1 3481 AQAYS-AAVLAELAriSNKSSTQIMSEGGIVplvAMLGRESSSAAKASAASALRTLtSNTEGGSQAELQKAVSDAGAIrplvaLLSEEDDTIRKRAA 3576
                  44443.33334444227***********864111344454555556666666776636778888888888888876543332233344455555677 PP

         KAP  513 gilanlaltdldyel 527 
                  g +a l++   + + 
  KOO24562.1 3577 GAIAALSVGMTEIQD 3591
                  777777766555555 PP

  == domain 5  score: 3.9 bits;  conditional E-value: 0.012
         KAP  316 klsivvenkdemaeldiveklaklvqsehedllnitlklllnlsfdtglrrkmikvgllpklvalladd..khklialkvlyhvslddkvksmftyt 410 
                   l+   +nk  +++ + v  l  ++ s+       +   l +l+  +  ++ + ++g +p lv+ll+    + ++ a   l+h++     k  +  +
  KOO24562.1 4526 DLARSSDNKSAIVAANGVGPLIAMLSSDSVATQTYASGALWQLAALGTNKTTIAEAGAIPPLVTLLSSSstETHKCAAGALWHLASSAESKIQMGDA 4622
                  4555556666666666666666666666666666666666666666666666666666666666665431134555666666666666666666666 PP

         KAP  411 dciqmlmkallesl 424 
                    i++l+++l   +
  KOO24562.1 4623 GAIPLLVQVLSSKS 4636
                  66666665554433 PP

>> HEAT_2  HEAT repeats
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.4       5.7   5.4e+03      27      44 ..    1598    1615 ..    1559    1653 .. 0.48
   2 ?    6.3   1.0     0.013        13       4      66 ..    1712    1787 ..    1709    1794 .. 0.83
   3 ?    2.3   2.2      0.24   2.2e+02      23      75 ..    1778    1846 ..    1755    1858 .. 0.65
   4 ?    1.0   4.1      0.58   5.5e+02       3      74 ..    1796    1887 ..    1794    1901 .. 0.69
   5 !    7.0   2.5     0.008       7.5       2      62 ..    1878    1946 ..    1877    1956 .. 0.72
   6 !    8.1   0.7    0.0037       3.5       4      85 ..    1962    2064 ..    1960    2070 .. 0.69
   7 !    8.6   0.8    0.0026       2.5       4      87 ..    2046    2142 ..    2043    2143 .. 0.80
   8 ?    5.4   1.7     0.026        25      13      58 ..    2094    2145 ..    2083    2185 .. 0.63
   9 !    8.8   0.4    0.0022       2.1       2      62 ..    2203    2276 ..    2202    2285 .. 0.77
  10 ?    4.4   2.6     0.052        49       3      61 ..    2290    2359 ..    2288    2395 .. 0.64
  11 ?    1.6   0.4      0.38   3.6e+02      14      82 ..    2346    2425 ..    2330    2431 .. 0.64
  12 ?   -1.7   0.0       4.2     4e+03       3      37 ..    2485    2519 ..    2483    2548 .. 0.74
  13 !    7.6   2.1    0.0052         5      26      85 ..    2569    2638 ..    2536    2644 .. 0.69
  14 ?    3.2   0.2      0.12   1.1e+02      31      87 ..    2741    2807 ..    2710    2808 .. 0.77
  15 ?    2.7   0.6      0.18   1.7e+02       3      59 ..    2745    2811 ..    2743    2850 .. 0.50
  16 ?    0.0   0.6       1.2   1.1e+03      33      58 ..    2909    2934 ..    2826    2951 .. 0.54
  17 ?    4.5   0.4     0.048        45      17      58 ..    3136    3184 ..    3118    3197 .. 0.71
  18 ?    4.5   3.3     0.048        45      15      55 ..    3206    3247 ..    3192    3260 .. 0.78
  19 !    9.8   1.4    0.0011         1       3      87 ..    3268    3367 ..    3266    3368 .. 0.80
  20 ?   -1.5   0.2       3.7   3.5e+03      26      87 ..    3460    3532 ..    3441    3533 .. 0.58
  21 !    8.9   6.6    0.0021         2       3      88 .]    3511    3623 ..    3509    3623 .. 0.73
  22 !   11.4   3.2   0.00035      0.33       2      87 ..    3558    3666 ..    3557    3667 .. 0.74
  23 ?    5.2   4.0      0.03        28      18      86 ..    3663    3745 ..    3642    3747 .. 0.66
  24 ?    6.1   3.9     0.015        14       2      63 ..    3688    3754 ..    3687    3779 .. 0.77
  25 ?    3.3   0.5      0.12   1.1e+02      18      60 ..    3848    3897 ..    3830    3941 .. 0.71
  26 ?    2.3   0.3      0.24   2.3e+02      48      84 ..    3953    3991 ..    3925    3995 .. 0.48
  27 !   10.7   1.5   0.00055      0.52       2      62 ..    3997    4062 ..    3996    4070 .. 0.74
  28 !    6.8   2.9    0.0093       8.8      15      80 ..    4143    4214 ..    4125    4222 .. 0.72
  29 !    7.1   0.4    0.0077       7.2      13      69 ..    4223    4287 ..    4209    4303 .. 0.85
  30 ?   -0.3   0.4       1.5   1.4e+03      16      48 ..    4307    4347 ..    4294    4400 .. 0.45
  31 ?    6.0   1.6     0.016        15       2      55 ..    4378    4441 ..    4332    4441 .. 0.69
  32 ?    6.7   6.0      0.01       9.5       2      87 ..    4378    4478 ..    4377    4479 .. 0.71
  33 ?    6.7   5.8      0.01       9.5       2      80 ..    4420    4512 ..    4419    4525 .. 0.78
  34 !   14.9   1.3   2.8e-05     0.027      20      86 ..    4564    4646 ..    4543    4648 .. 0.71
  35 !   11.4   0.6   0.00034      0.32      17      86 ..    4647    4732 ..    4644    4734 .. 0.71

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 5.7
      HEAT_2   27 ignpealpaLvelleded 44  
                   g+p+++++L  l +d+d
  KOO24562.1 1598 TGSPRLRRTLDALTRDAD 1615
                  233344444444444444 PP

  == domain 2  score: 6.3 bits;  conditional E-value: 0.013
      HEAT_2    4 LlqalendpdpevrraairaLgrignp............ealpaLvellededpavRraaaeaLg..aigdpealpa 66  
                  L++ + +  + evr +a+ +L +++++            +a++ Lv+ll++  +  ++ aa +Lg  a+g p++ +a
  KOO24562.1 1712 LVAEI-TTGNSEVRDHAAAQLRSLATQnhgqnqpdvlaaKAVEPLVKLLSSGTACSQESAAATLGvlALGKPDTQEA 1787
                  78888.88999***********8877777788899999999********9999988888888888667777776665 PP

  == domain 3  score: 2.3 bits;  conditional E-value: 0.24
      HEAT_2   23 aLgrignpea......lpaLvellededpavRraaaeaLgaig..........dpealpaLkelldddd 75  
                  aLg+ +++ea      +  Lv+ll+  ++ v++++a aL+a++             a+p L ++++  +
  KOO24562.1 1778 ALGKPDTQEAivaaggIGPLVNLLKMGSSKVQEQVASALAALDadvshqqgiiKAGAIPPLVAIVKGGS 1846
                  444555555566666689999999999999999999999999743332222333447777777666555 PP

  == domain 4  score: 1.0 bits;  conditional E-value: 0.58
      HEAT_2    3 aLlqalendpdpevrraairaLg....rignp......ealpaLvellededpavRraaaeaLg...........aigdpealpaLkellddd 74  
                  +L+++l +  + +v+ +++ aL+    +  ++       a+p Lv +++  + a +  aa+aL+            i++  ++p+L+ ll + 
  KOO24562.1 1796 PLVNLL-KMGSSKVQEQVASALAaldaDVSHQqgiikaGAIPPLVAIVKGGSGAAQSFAAQALAnaaaysgeaqrNIASAGSIPLLLSLLGTG 1887
                  577777.78888999999999996655222225555557799999999999999999999999744444444433445677888888877655 PP

  == domain 5  score: 7.0 bits;  conditional E-value: 0.008
      HEAT_2    2 daLlqalendpdpevrraairaLg........rignpealpaLvellededpavRraaaeaLgaigdpe 62  
                  ++Ll++l + + ++ +++a+  L+        +i++   ++ L++ll+  d++ + aaaeaL++i+d+ 
  KOO24562.1 1878 PLLLSLLGTGKAQKPAATALAKLAhenkdiqtEIAEAGGIAPLLSLLNGIDMDAQVAAAEALAEIADDN 1946
                  566666655555555666666666777755555566677**************************8743 PP

  == domain 6  score: 8.1 bits;  conditional E-value: 0.0037
      HEAT_2    4 LlqalendpdpevrraairaLg.....rignpea......lpaLvellededpavRraaaeaLgaig.....dpe.......alpaLkelldddddd 77  
                  Ll++l ++ +   + +   aL+     + +n++a      ++ +v+lle+++++v   aa aL +i      + +       a+  L  l ++ +d+
  KOO24562.1 1962 LLALL-SSRSASAQSKSMAALAqltrhNRDNQDAvarmggIKPIVQLLESSSTDVTSYAASALMEISrgnlpN-QktvvdlgAVGQLGNLIKTSNDE 2056
                  77878.5555555555555555443555566766677777***********************9995334331.13444455888888888888899 PP

      HEAT_2   78 vvReaAae 85  
                  +v++++a 
  KOO24562.1 2057 RVKAEVAG 2064
                  99888654 PP

  == domain 7  score: 8.6 bits;  conditional E-value: 0.0026
      HEAT_2    4 LlqalendpdpevrraairaLgri.gnpea.......lpaLvellededpavRraaaeaLgaigd.pe.....alpaLkellddddddvvReaAaea 86  
                  L ++++++ d+ v+++++ a+ ++  +pe+        + Lv ll   + + R++aa aL+ +g+ ++       ++L ell + + +  +e+A++a
  KOO24562.1 2046 LGNLIKTSNDERVKAEVAGAIWSLsETPEIkamfgfcNAPLVTLLGMGSVRAREHAAGALASLGLdNKanqvvLTQLLVELLINGNREA-QERAVKA 2141
                  7788989999999999999999752566666688888999***********************95222333434699999999988776.8999999 PP

      HEAT_2   87 L 87  
                  L
  KOO24562.1 2142 L 2142
                  8 PP

  == domain 8  score: 5.4 bits;  conditional E-value: 0.026
      HEAT_2   13 dpevrraairaLg.....rignp.ealpaLvellededpavRraaaeaLgai 58  
                  +   r +a+ aL+     +++n+  + ++Lvell + +++ ++ a++aL a+
  KOO24562.1 2094 SVRAREHAAGALAslgldNKANQvVLTQLLVELLINGNREAQERAVKALNAL 2145
                  5555666777777443443344434488888888889999999999988876 PP

  == domain 9  score: 8.8 bits;  conditional E-value: 0.0022
      HEAT_2    2 daLlqalendpdpevrraairaLg..rignpea.........lpaLvell...ededpavRraaaeaLgaigdpe 62  
                  ++L+q+l +d+   ++ +a+ aL+   + n+e+         ++ L++ll     e+p+ R+  a+aL+ +++++
  KOO24562.1 2203 QPLIQQL-SDARVFIKEQAASALAklAFENEETrasitecggIQPLIKLLtlnAKENPMARMYGADALANLATDS 2276
                  79*****.9***************554456544445566677999999996544599************998533 PP

  == domain 10  score: 4.4 bits;  conditional E-value: 0.052
      HEAT_2    3 aLlqalendpdpevrraairaLg.....rignp.........ealpaLvelleded.pavRraaaeaLgaigdp 61  
                  +L+ +l +d+ +++++ a+raL+                    a+ +Lv lle +  p+ +++aa aL a++d+
  KOO24562.1 2290 PLVLVL-EDEAQKTKKYAARALArlskdH---AstqaaiaeaGAIVLLVALLEGTFgPEAQEEAAGALFALADH 2359
                  677778.8***************655440...134444443377999999998887799999999999777543 PP

  == domain 11  score: 1.6 bits;  conditional E-value: 0.38
      HEAT_2   14 pevrraairaLg.......rignpealpaLvellededpavRraaaeaLgaig...dpe..alpaLkellddddddvvRea 82  
                  +e ++ a+ aL+        i +   + +Lv ll + +++ R++a  aL+++     ++   ++ L ++l+d + +  +e 
  KOO24562.1 2346 QEEAAGALFALAdhegnrvGITESGGIGWLVMLLGCNNRRAREHAEGALVRLSienANRvlIIKKLVDMLQD-SGAAAQET 2425
                  4455667777776666633333335599*********************98853323332257888888865.34433444 PP

  == domain 12  score: -1.7 bits;  conditional E-value: 4.2
      HEAT_2    3 aLlqalendpdpevrraairaLg.rignpealpaLv 37  
                  +Ll +l ++++ + + +a+ a+   ++n +  +aLv
  KOO24562.1 2485 PLLDIL-DSASAKAKENAVGAIKeLCRNSKNNQALV 2519
                  789999.99999999999999994244544444444 PP

  == domain 13  score: 7.6 bits;  conditional E-value: 0.0052
      HEAT_2   26 rignpealpaLvellededpavRraaaeaLg...........aigdpealpaLkellddddddvvReaAae 85  
                   i++  a++ Lv +l ++++  +++aa aL+           ai++  a++ L+ l+++ ++d  + + a 
  KOO24562.1 2569 AIAEAGAIQPLVGMLGSPSSQMQANAAGALAnlaqnhtenqsAIARTGAIAPLCTLMREGSEDT-KDQCAA 2638
                  2444477***********************833333333333445777*********9988765.554443 PP

  == domain 14  score: 3.2 bits;  conditional E-value: 0.12
      HEAT_2   31 ealpaLvellededpavRraaaeaL...........gaigdpealpaLkellddddddvvReaAaeaL 87  
                    +p L+ +l+++   +++aaa+a            + i+ ++a+p L +l++  +++  +e A++aL
  KOO24562.1 2741 GGIPPLITWLQSTTVTTQAAAAHAVlclasdnattqVFIAKSDAIPPLIALVAKSSVEA-QEYATRAL 2807
                  45899999999999999999999886666555544447789999999999998887776.78888776 PP

  == domain 15  score: 2.7 bits;  conditional E-value: 0.18
      HEAT_2    3 aLlqalendpdpevrraairaLg...........rignpealpaLvellededpavRraaaeaLgaig 59  
                  +L+  l ++    +++aa++a              i+  +a+p L+ l+  ++ + ++ a +aL  ++
  KOO24562.1 2745 PLITWL-QSTTVTTQAAAAHAVLclasdnattqvFIAKSDAIPPLIALVAKSSVEAQEYATRALWHMA 2811
                  455555.3333333333333322222544444333444477777777777777777777777774443 PP

  == domain 16  score: 0.0 bits;  conditional E-value: 1.2
      HEAT_2   33 lpaLvellededpavRraaaeaLgai 58  
                  ++ ++ ll+++   + ++aa+ L+++
  KOO24562.1 2909 IQPIIALLSSPTIGTPETAARVLARL 2934
                  33333333333333333333333333 PP

  == domain 17  score: 4.5 bits;  conditional E-value: 0.048
      HEAT_2   17 rraairaLg.......rignpealpaLvellededpavRraaaeaLgai 58  
                  +++ai+ L+        i +  a+p Lv+ll+  +p  +++aa aL+ +
  KOO24562.1 3136 AARAIWHLAalfevhvIIIEAGAIPDLVQLLKMGSPKAQEMAAAALSDL 3184
                  45555555555544333345689***********************844 PP

  == domain 18  score: 4.5 bits;  conditional E-value: 0.048
      HEAT_2   15 evrraairaLgr.ignpealpaLvellededpavRraaaeaL 55  
                      aa+raL r i++  a++ Lv ll++  +  R++aa aL
  KOO24562.1 3206 RAELAALRALDRaIAEAGAIQPLVALLSSGTTQARENAAGAL 3247
                  344689999996489999999999999999999999999998 PP

  == domain 19  score: 9.8 bits;  conditional E-value: 0.0011
      HEAT_2    3 aLlqalendpdpevrraairaLgrignp......ealpaLvellededpavRraaaeaLgaig...........dpealpaLkellddddddvvRea 82  
                  ++++++ +d  ++ +++a+ aL+r++++      ++ +++v ll ++++ ++r aa  L+ ++           +  a++ L  ll     ++v+e+
  KOO24562.1 3268 PMVAII-DDGTEQAQKNAANALARLATKnadnqmQISKYCVGLLANQNTGTQRRAACVLSDLArdnpgspvvivNAGAISPLVNLLSG-GAADVKEE 3362
                  677888.9999************8888755666777************************98633333444443455*******9976.56777*** PP

      HEAT_2   83 AaeaL 87  
                  Aa+aL
  KOO24562.1 3363 AARAL 3367
                  **999 PP

  == domain 20  score: -1.5 bits;  conditional E-value: 3.7
      HEAT_2   26 rignpealpaLvellededpavRraaaeaLgaig...........dpealpaLkellddddddvvReaAaeaL 87  
                   i +  +++ Lv++l++  +  ++  a  L++++           ++  +  L ++l +++++  +++Aa+aL
  KOO24562.1 3460 GILSSNCIRPLVSMLTTGTAGAQAYSAAVLAELArisnksstqimSEGGIVPLVAMLGRESSSAAKASAASAL 3532
                  4555566777777776655444444444444332121222222336777888889999999999999999998 PP

  == domain 21  score: 8.9 bits;  conditional E-value: 0.0021
      HEAT_2    3 aLlqalendpdpevrraairaLg.....rignp..............ealpaLvellededpavRraaaeaLgai.......g....dpealpaLke 69  
                  +L++ l + ++ + ++ a+ aL      +   +               a++ Lv ll+ ed  +R+ aa a++a+       +     ++ +  L  
  KOO24562.1 3511 PLVAMLGRESSSAAKASAASALRtltsnT---EggsqaelqkavsdaGAIRPLVALLSEEDDTIRKRAAGAIAALsvgmteiQdaveKNKGIGKLVS 3604
                  67777777788888888888888654440...24444555555555577********************99996644333332333257789***** PP

      HEAT_2   70 llddddddvvReaAaeaLa 88  
                  ll++  +++v ++Aa aLa
  KOO24562.1 3605 LLASSVHEEVSAEAAAALA 3623
                  **************99996 PP

  == domain 22  score: 11.4 bits;  conditional E-value: 0.00035
      HEAT_2    2 daLlqalendpdpevrraairaLg.......rignp....ealpaLvell.ededpavRraaaeaLg...........aigdpealpaLkelldddd 75  
                   +L+++l + +d+ +r++a+ a++       +i++     + +  Lv+ll ++ +++v ++aa aL+           +++++  ++ L  ll+++ 
  KOO24562.1 3558 RPLVALL-SEEDDTIRKRAAGAIAalsvgmtEIQDAveknKGIGKLVSLLaSSVHEEVSAEAAAALAvlahnnkknqdKLASDGGIEPLISLLNTEG 3653
                  5799999.99**************997776644444555688******9978889***********8555555444445556777888888887776 PP

      HEAT_2   76 d.dvvReaAaeaL 87  
                    d+ +ea+a+aL
  KOO24562.1 3654 GgDYAKEASASAL 3666
                  4477777777776 PP

  == domain 23  score: 5.2 bits;  conditional E-value: 0.03
      HEAT_2   18 raairaLg.........rignpealpaLvellededpavRraaaeaLgaig.....dpealpaLkellddddddvvReaAaea 86  
                  + a+++L           i+n   ++ Lv +l  +++  R++aa aL+a++     ++ea++ L  +l+  +d    ++Aa a
  KOO24562.1 3663 ASALWSLCigkhhenqvAIANAGGIAPLVAVLGLTSEKAREQAAGALAALAlnnteNEEAIAQLIVSLLGSEDKQASAKAALA 3745
                  55566555655555544566667799999999999999999999999988644433577888887777777766666666665 PP

  == domain 24  score: 6.1 bits;  conditional E-value: 0.015
      HEAT_2    2 daLlqalendpdpevrraairaLg.....rignpea.lpaLvellededpavRraaaeaLgaigdpea 63  
                  ++L+++l    +++ r +a+ aL+     +  n+ea  +++v+ll +ed    + aa a +++++  a
  KOO24562.1 3688 APLVAVL-GLTSEKAREQAAGALAalalnNTENEEAiAQLIVSLLGSEDKQASAKAALAVSRFARANA 3754
                  5777777.7788888888888888776766666677255566677***************99976443 PP

  == domain 25  score: 3.3 bits;  conditional E-value: 0.12
      HEAT_2   18 raairaLg.......rignpealpaLvellededpavRraaaeaLgaigd 60  
                  + a++aL+       +ig    ++ Lv ll++ +p  +++aa aL a+++
  KOO24562.1 3848 AGALWALAddehnreTIGKMHGIAPLVGLLKTGSPGAQETAAGALHALAE 3897
                  4466666676555544555566********************99988753 PP

  == domain 26  score: 2.3 bits;  conditional E-value: 0.24
      HEAT_2   48 RraaaeaLgaigd.pealpaLkelldd.ddddvvReaAa 84  
                   ++a+  L a gd p+a+++ ++ll++  +d++ R a+a
  KOO24562.1 3953 AYEAVAMLKAHGDsPKAAEHVTQLLRNlAKDPENRSAIA 3991
                  333344444444346666555555554222333333333 PP

  == domain 27  score: 10.7 bits;  conditional E-value: 0.00055
      HEAT_2    2 daLlqalendpdpevrraairaLgrignp......ealpaLvellededpavRraaaeaLgaigdpe 62  
                  + L+ +l ++ +++   +a++ L+ i+ +      ++ + Lv+ll ++++avR+ a eaL  ++ ++
  KOO24562.1 3997 PDLVRQL-ECGSDKSMSMAAQGLALIALKsaethaTVTQELVKLLASDKAAVRQRASEALTDMAADD 4062
                  5677788.778888888888888855444222333559**********************9987544 PP

  == domain 28  score: 6.8 bits;  conditional E-value: 0.0093
      HEAT_2   15 evrraairaLg.......rignpealpaLvellededpavRraaaeaLgaigdpealpaLkellddddddvvR 80  
                  e ++a++  L+        i+  + ++ Lv ll+d +++  ++aa+ L+++++  a ++L+ +++   +++v+
  KOO24562.1 4143 EHAAAVLSGLApigmnakAIKLAKGIEPLVVLLSDGNADAKEHAADCLAQLARR-ASASLEIAAAGAVSAFVK 4214
                  4455666666666554444555588*************************9985.777777777666666665 PP

  == domain 29  score: 7.1 bits;  conditional E-value: 0.0077
      HEAT_2   13 dpevrraairaLg........rignpealpaLvellededpavRraaaeaLgaigdpealpaLke 69  
                   pev+++a+ +++        +i+++ a+  Lv +++++ +  R+   +aL+a+g+p   ++   
  KOO24562.1 4223 PPEVAARALSEIAldnpdtqtQIAEEGAISPLVAMVSSATALERASSSTALSAVGTPVKQRSVSG 4287
                  689****************9999********************************9866555544 PP

  == domain 30  score: -0.3 bits;  conditional E-value: 1.5
      HEAT_2   16 vrraairaLg........rignpealpaLvellededpavR 48  
                  v++ a+ +L+         i ++e +p Lv ll+++ p+  
  KOO24562.1 4307 VAAGALATLAkdniinqtMITEEEGIPPLVALLNHKTPMHK 4347
                  55555555555544443233344666666666655544433 PP

  == domain 31  score: 6.0 bits;  conditional E-value: 0.016
      HEAT_2    2 daLlqalendpdpevrraairaLgrignp...........ealpaLvellededpavRraaaeaL 55  
                  ++L+++l  +++  +++ a+ aL +++ +            a++ Lv++l +++++++++a+ aL
  KOO24562.1 4378 APLVALL-ASESGTTQQYAAAALQSLARDhtenqialtkaGAIAPLVDILGSDSADTQEHAVGAL 4441
                  5667767.666666666666666633333233445555555578888888777777777777665 PP

  == domain 32  score: 6.7 bits;  conditional E-value: 0.01
      HEAT_2    2 daLlqalendpdpevrraairaLgrignp...........ealpaLvellededpavRraaaeaLgaig......dpealpaLkellddddddvvRe 81  
                  ++L+++l  +++  +++ a+ aL +++ +            a++ Lv++l +++++++++a+ aL  ++      ++++++ L + l   +++  + 
  KOO24562.1 4378 APLVALL-ASESGTTQQYAAAALQSLARDhtenqialtkaGAIAPLVDILGSDSADTQEHAVGALLSLAshdvnsRNAVVKKLIAVLEL-RSATAQM 4472
                  6889999.8888888888888888444333346566666677*********************99877622232236688888887754.4555577 PP

      HEAT_2   82 aAaeaL 87  
                   AaeaL
  KOO24562.1 4473 NAAEAL 4478
                  777777 PP

  == domain 33  score: 6.7 bits;  conditional E-value: 0.01
      HEAT_2    2 daLlqalendpdpevrraairaLgrignp......ealpaLvellededpavRraaaeaLg...........aigdpealpaLkellddddddvvR 80  
                  ++L+ +l  + + +++ +a+ aL ++++        +++ L+ +le  ++  +++aaeaL+           ai    a++ L +ll d   ++vR
  KOO24562.1 4420 APLVDIL-GSDSADTQEHAVGALLSLASHdvnsrnAVVKKLIAVLELRSATAQMNAAEALAvlaarseenrkAITAANAIEPLVRLLGD--GRRVR 4512
                  7899999.99999999999999997766634444456***********************86655555544455567799999999965..35555 PP

  == domain 34  score: 14.9 bits;  conditional E-value: 2.8e-05
      HEAT_2   20 airaLg.......rignpealpaLvellededpavRraaaeaL........g..aigdpealpaLkellddddddvvReaAaea 86  
                  a+++L+       +i++  a+p Lv ll+++++++ + aa aL        +  ++gd  a+p+L + l +++ +  Re Aa  
  KOO24562.1 4564 ALWQLAalgtnktTIAEAGAIPPLVTLLSSSSTETHKCAAGALwhlassaeSkiQMGDAGAIPLLVQVLSSKSGEA-REHAAAV 4646
                  45555555577767777899**********9999999999999777665442447799*********998877776.6666655 PP

  == domain 35  score: 11.4 bits;  conditional E-value: 0.00034
      HEAT_2   17 rraairaLg...r.ignpealpaLvellededpavRraaa...eaLg.........aigdpealpaLkellddddddvvReaAaea 86  
                    a +r+Lg   + i +  a++ L+ ll+d+ ++++r+aa   +aL+         ai++  a+p+L ++l++dd + +  aAa  
  KOO24562.1 4647 LSALARSLGtnkKiIYHAGAIRPLIVLLTDKRSMTQRHAAcclWALSdgnegvydkAIAEGGAIPLLIKMLLEDDTETRGFAAAAL 4732
                  45677778876532457899************999999993444443444445555667777**********99888766665544 PP

>> V-ATPase_H_C  V-ATPase subunit H
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.8   0.0      0.03        28      47     111 ..    1962    2025 ..    1947    2030 .. 0.83
   2 ?    4.5   0.8     0.039        36      39     113 ..    2115    2188 ..    2110    2191 .. 0.86
   3 ?    0.1   0.0      0.86   8.1e+02      46     108 ..    2485    2547 ..    2471    2555 .. 0.81
   4 ?   -2.3   0.0       4.9   4.7e+03      42     105 ..    2574    2636 ..    2561    2644 .. 0.82
   5 ?   -0.4   0.0       1.3   1.2e+03      37     113 ..    3296    3371 ..    3289    3374 .. 0.78
   6 ?    1.6   0.1       0.3   2.8e+02      41     111 ..    3554    3624 ..    3544    3629 .. 0.81
   7 ?    2.8   0.0      0.13   1.2e+02      39      99 ..    3718    3778 ..    3711    3782 .. 0.82
   8 ?    2.1   0.0      0.21     2e+02      21     112 ..    4351    4444 ..    4342    4448 .. 0.78
   9 ?   -1.9   0.0       3.6   3.4e+03      43      80 ..    4455    4511 ..    4450    4554 .. 0.50

  Alignments for each domain:
  == domain 1  score: 4.8 bits;  conditional E-value: 0.03
  V-ATPase_H_C   47 LiklleeskdktvlavalnDigelvkllpegkkvleklkaKekimellehedeevkyeALkavqk 111 
                    L++ll +s++ + ++  +  +++l+++ ++ ++ ++++++ + i++lle++ ++v   A  a+ +
    KOO24562.1 1962 LLALL-SSRSASAQSKSMAALAQLTRHNRDNQDAVARMGGIKPIVQLLESSSTDVTSYAASALME 2025
                    66777.3555555566667799*********************************9999888765 PP

  == domain 2  score: 4.5 bits;  conditional E-value: 0.039
  V-ATPase_H_C   39 knfkllkkLiklleeskdktvlavalnDigelvkllpegkkvleklkaKekimellehedeevkyeALkavqkll 113 
                    +++ l + L++ll  + +++ +  a++ +  lvk+  + ++v+++ ++ +++++ll+++  e k  AL a++  +
    KOO24562.1 2115 NQVVLTQLLVELLI-NGNREAQERAVKALNALVKENTSAHEVIAQAGNPAQLVALLKSSHLEAKDYALWALSLSI 2188
                    56777888999994.5667778889999****************************************9998766 PP

  == domain 3  score: 0.1 bits;  conditional E-value: 0.86
  V-ATPase_H_C   46 kLiklleeskdktvlavalnDigelvkllpegkkvleklkaKekimelle.hedeevkyeALka 108 
                     L+++l+ s++ +    a+  i+el+++ ++ ++++++ ++  k++ +++  ++++vk  +L  
    KOO24562.1 2485 PLLDILD-SASAKAKENAVGAIKELCRNSKNNQALVSRAGGIPKLVGVMAgFSNQTVKDASLMQ 2547
                    5788884.6777778888899*******************999999998845799999999865 PP

  == domain 4  score: -2.3 bits;  conditional E-value: 4.9
  V-ATPase_H_C   42 kllkkLiklleeskdktvlavalnDigelvkllpegkkvleklkaKekimellehedeevkyeA 105 
                      ++ L+ +l  s +++++a a+  +++l++++ e ++ +++++a + + +l+++  e+ k + 
    KOO24562.1 2574 GAIQPLVGML-GSPSSQMQANAAGALANLAQNHTENQSAIARTGAIAPLCTLMREGSEDTKDQC 2636
                    5677888889.577889999999999******************99999999998888877665 PP

  == domain 5  score: -0.4 bits;  conditional E-value: 1.3
  V-ATPase_H_C   37 eeknfkllkkLiklleeskdktvlavalnDigelvkllpegkkvleklkaKekimellehedeevkyeALkavqkll 113 
                     ++++++ k  + ll ++++  ++  a+  ++ l++  p +  v+ + +a + +++ll+   ++vk eA +a+++l 
    KOO24562.1 3296 ADNQMQISKYCVGLLANQNT-GTQRRAACVLSDLARDNPGSPVVIVNAGAISPLVNLLSGGAADVKEEAARALSTLA 3371
                    56778888888899954444.3333444447778899999999**************************99998875 PP

  == domain 6  score: 1.6 bits;  conditional E-value: 0.3
  V-ATPase_H_C   41 fkllkkLiklleeskdktvlavalnDigelvkllpegkkvleklkaKekimellehe.deevkyeALkavqk 111 
                       ++ L++ll +++d+t+   a+  i+ l   + e ++ +ek k+  k+++ll+++  eev+ eA  a+  
    KOO24562.1 3554 AGAIRPLVALL-SEEDDTIRKRAAGAIAALSVGMTEIQDAVEKNKGIGKLVSLLASSvHEEVSAEAAAALAV 3624
                    55788999999.477788888899999999999999999999999999999998877799999999888765 PP

  == domain 7  score: 2.8 bits;  conditional E-value: 0.13
  V-ATPase_H_C   39 knfkllkkLiklleeskdktvlavalnDigelvkllpegkkvleklkaKekimellehede 99  
                    +n + + +Li  l  s+dk+  a a+  ++++++   + ++ ++k ++ e +++ll+ ed+
    KOO24562.1 3718 ENEEAIAQLIVSLLGSEDKQASAKAALAVSRFARANASNQRSIAKAGGIELLVSLLNVEDA 3778
                    445555555554447999999999*******************************999986 PP

  == domain 8  score: 2.1 bits;  conditional E-value: 0.21
  V-ATPase_H_C   21 pvHksekFWkenaekleekn...fkllkkLiklleeskdktvlavalnDigelvkllpegkkvleklkaKekimellehedeevkyeALkavqkl 112 
                      H+ +  W+  a++ ++        +  L++ll +s++ t+++ a+  +++l++ + e +  l+k +a + ++++l ++ ++ + +A  a+ +l
    KOO24562.1 4351 YEHTCKALWHLAATEENQVAiakAGGIAPLVALL-ASESGTTQQYAAAALQSLARDHTENQIALTKAGAIAPLVDILGSDSADTQEHAVGALLSL 4444
                    5567777776555433322211144567799999.58888999*******************************************999888665 PP

  == domain 9  score: -1.9 bits;  conditional E-value: 3.6
  V-ATPase_H_C   43 llkkLikll...................eeskdktvlavalnDigelvkllpegkkv 80  
                    ++kkLi++l                    +s++++    a+n i+ lv+ll +g++v
    KOO24562.1 4455 VVKKLIAVLelrsataqmnaaealavlaARSEENRKAITAANAIEPLVRLLGDGRRV 4511
                    566666666333333222222222222233333333444444444444444444444 PP

>> RasGEF_N_2  Rapamycin-insensitive companion of mTOR RasGEF_N domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.0       4.5   4.2e+03       7      44 ..    1917    1954 ..    1916    1969 .. 0.83
   2 ?   -0.1   0.0       1.3   1.2e+03       6      45 ..    2000    2040 ..    2000    2054 .. 0.80
   3 ?    5.8   0.3     0.019        18       8      71 ..    2121    2193 ..    2118    2208 .. 0.77
   4 ?   -0.6   0.0       1.8   1.7e+03       6      39 ..    2201    2234 ..    2197    2257 .. 0.80
   5 ?    0.4   0.0      0.87   8.2e+02       6      43 ..    2287    2324 ..    2286    2333 .. 0.90
   6 ?    0.3   0.0      0.93   8.8e+02       5      45 ..    2481    2521 ..    2478    2535 .. 0.86
   7 ?   -0.2   0.0       1.4   1.3e+03       6      42 ..    2575    2612 ..    2571    2624 .. 0.84
   8 ?   -2.0   0.0       5.1   4.8e+03      10      41 ..    4036    4068 ..    4032    4076 .. 0.78
   9 ?   -1.4   0.0       3.2     3e+03       6      32 ..    4624    4650 ..    4611    4664 .. 0.82

  Alignments for each domain:
  == domain 1  score: -1.8 bits;  conditional E-value: 4.5
  RasGEF_N_2    7 iellvnqLydqsrevvaaaleiLeeacddkeslevlve 44  
                  i  l+  L+  +++ + aa+e+L e+ dd++ +++ + 
  KOO24562.1 1917 IAPLLSLLNGIDMDAQVAAAEALAEIADDNTETQAAIA 1954
                  77889999999999999************977766665 PP

  == domain 2  score: -0.1 bits;  conditional E-value: 1.3
  RasGEF_N_2    6 giellvnqLydqsrevvaaaleiLeeacddk.eslevlvel 45  
                  gi+ +v+ L+ +s++v + a+++L e++  +  + +++v+l
  KOO24562.1 2000 GIKPIVQLLESSSTDVTSYAASALMEISRGNlPNQKTVVDL 2040
                  68999*********************998886666666664 PP

  == domain 3  score: 5.8 bits;  conditional E-value: 0.019
  RasGEF_N_2    8 ellvnqLydqsrevvaaaleiLeeacddk.eslevlvelkp..sl......qhlgeigslLllkllstssGfk 71  
                  +llv+ L + +re ++ a+++L+  ++++ +  ev+++  +  +l      +hl+ ++  L    ls+++  +
  KOO24562.1 2121 QLLVELLINGNREAQERAVKALNALVKENtSAHEVIAQAGNpaQLvallksSHLEAKDYALWALSLSIEKKNQ 2193
                  89***************************66666666655434447778888887778888888888777665 PP

  == domain 4  score: -0.6 bits;  conditional E-value: 1.8
  RasGEF_N_2    6 giellvnqLydqsrevvaaaleiLeeacddkesl 39  
                  g++ l++qL+d    + ++a+++L +   ++e +
  KOO24562.1 2201 GVQPLIQQLSDARVFIKEQAASALAKLAFENEET 2234
                  6899********************9985555333 PP

  == domain 5  score: 0.4 bits;  conditional E-value: 0.87
  RasGEF_N_2    6 giellvnqLydqsrevvaaaleiLeeacddkeslevlv 43  
                  gi+ lv  L+d++++  + a+++L + ++d++s+++ +
  KOO24562.1 2287 GIRPLVLVLEDEAQKTKKYAARALARLSKDHASTQAAI 2324
                  68999**************************9888766 PP

  == domain 6  score: 0.3 bits;  conditional E-value: 0.93
  RasGEF_N_2    5 WgiellvnqLydqsrevvaaaleiLeeacddkeslevlvel 45  
                   gi  l++ L   s +  + a+ +++e c + ++ ++lv+ 
  KOO24562.1 2481 NGIVPLLDILDSASAKAKENAVGAIKELCRNSKNNQALVSR 2521
                  578889999999***********************999985 PP

  == domain 7  score: -0.2 bits;  conditional E-value: 1.4
  RasGEF_N_2    6 giellvnqLydqsrevvaaaleiLeeacddk.eslevl 42  
                  +i+ lv  L  +s++++a a+ +L +  +++ e+  ++
  KOO24562.1 2575 AIQPLVGMLGSPSSQMQANAAGALANLAQNHtENQSAI 2612
                  6999***********************99994544443 PP

  == domain 8  score: -2.0 bits;  conditional E-value: 5.1
  RasGEF_N_2   10 lvnqLydqsrevvaaaleiLeeacddk.eslev 41  
                  lv+ L  ++ +v++ a e+L ++  d+ +s+ +
  KOO24562.1 4036 LVKLLASDKAAVRQRASEALTDMAADDkNSTTS 4068
                  789999999************996666255554 PP

  == domain 9  score: -1.4 bits;  conditional E-value: 3.2
  RasGEF_N_2    6 giellvnqLydqsrevvaaaleiLeea 32  
                  +i+llv+ L+ +s e +++a+ +L   
  KOO24562.1 4624 AIPLLVQVLSSKSGEAREHAAAVLSAL 4650
                  588999999999999999999888766 PP

>> MotA_ExbB  MotA/TolQ/ExbB proton channel family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.3   0.1     0.016        16      24      63 ..    2545    2584 ..    2530    2588 .. 0.78
   2 ?   -1.1   0.0       1.6   1.5e+03      26      61 ..    2589    2624 ..    2584    2626 .. 0.82
   3 ?    3.6   0.0     0.057        54      22      62 ..    2627    2667 ..    2604    2670 .. 0.86
   4 ?    1.2   0.0      0.29   2.8e+02      39      62 ..    2810    2833 ..    2784    2835 .. 0.80
   5 ?   -3.1   0.1       6.4   6.1e+03      24      62 ..    3194    3232 ..    3174    3233 .. 0.74
   6 ?   -2.2   0.0       3.5   3.3e+03      41      63 ..    3673    3695 ..    3667    3695 .. 0.90
   7 ?   -0.6   0.0       1.1     1e+03      42      62 ..    3857    3877 ..    3851    3879 .. 0.85
   8 ?    0.4   0.1      0.55   5.2e+02      24      63 ..    4388    4427 ..    4365    4428 .. 0.84

  Alignments for each domain:
  == domain 1  score: 5.3 bits;  conditional E-value: 0.016
                  HHHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHH CS
   MotA_ExbB   24 peelrraleealsreeerlekglsilatigslaPllGLlG 63  
                    +l      al+++++  +k++  +a +g++ Pl+G+lG
  KOO24562.1 2545 LMQLCTLAADALQEMAKGNRKNQDAIAEAGAIQPLVGMLG 2584
                  444445556788999999999******************9 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 1.6
                  HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHH CS
   MotA_ExbB   26 elrraleealsreeerlekglsilatigslaPllGL 61  
                  +++     al++ ++++ +++s +a +g++aPl  L
  KOO24562.1 2589 QMQANAAGALANLAQNHTENQSAIARTGAIAPLCTL 2624
                  5666667788899999****************9765 PP

  == domain 3  score: 3.6 bits;  conditional E-value: 0.057
                  HHHHHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHH CS
   MotA_ExbB   22 aepeelrraleealsreeerlekglsilatigslaPllGLl 62  
                  + +e+++++  +a+ + ++ ++ +  ++a +g++ PllGLl
  KOO24562.1 2627 EGSEDTKDQCAAAILALATDHQGNKDTIAKLGGIDPLLGLL 2667
                  5678899999999***************************9 PP

  == domain 4  score: 1.2 bits;  conditional E-value: 0.29
                  HHHHTTTHHHHHHHHHHHHHHHHH CS
   MotA_ExbB   39 eerlekglsilatigslaPllGLl 62  
                  ++  e++ +++a +g++ Pl+G+l
  KOO24562.1 2810 MASQEENRTLIANAGAIKPLIGML 2833
                  66778899***************8 PP

  == domain 5  score: -3.1 bits;  conditional E-value: 6.4
                  HHHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHH CS
   MotA_ExbB   24 peelrraleealsreeerlekglsilatigslaPllGLl 62  
                    e ++  ++a+++e++ l++  + +a +g++ Pl+ Ll
  KOO24562.1 3194 AAEQQKEKDRAARAELAALRALDRAIAEAGAIQPLVALL 3232
                  444455557788889999999999999999999999887 PP

  == domain 6  score: -2.2 bits;  conditional E-value: 3.5
                  HHTTTHHHHHHHHHHHHHHHHHH CS
   MotA_ExbB   41 rlekglsilatigslaPllGLlG 63  
                  ++++++  +a +g++aPl+ +lG
  KOO24562.1 3673 KHHENQVAIANAGGIAPLVAVLG 3695
                  68889999***********9998 PP

  == domain 7  score: -0.6 bits;  conditional E-value: 1.1
                  HTTTHHHHHHHHHHHHHHHHH CS
   MotA_ExbB   42 lekglsilatigslaPllGLl 62  
                   e + +++  + ++aPl+GLl
  KOO24562.1 3857 DEHNRETIGKMHGIAPLVGLL 3877
                  5778889999**********9 PP

  == domain 8  score: 0.4 bits;  conditional E-value: 0.55
                  HHHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHH CS
   MotA_ExbB   24 peelrraleealsreeerlekglsilatigslaPllGLlG 63  
                  + ++++   +al+  ++ + +++  l  +g++aPl+ +lG
  KOO24562.1 4388 SGTTQQYAAAALQSLARDHTENQIALTKAGAIAPLVDILG 4427
                  556677778888899999999999***********99998 PP

>> TAN  Telomere-length maintenance and DNA damage repair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.3   0.0      0.37   3.5e+02       3      52 ..    1711    1760 ..    1709    1778 .. 0.84
   2 ?   -1.1   0.1       1.9   1.8e+03       4      33 ..    1962    1991 ..    1961    2012 .. 0.84
   3 ?   -1.1   0.0         2   1.9e+03       5      33 ..    2487    2515 ..    2483    2524 .. 0.84
   4 ?   -1.3   0.0       2.3   2.2e+03       3      32 ..    3227    3256 ..    3225    3315 .. 0.74
   5 ?    5.1   0.2     0.025        23       2      37 ..    4034    4068 ..    4033    4080 .. 0.81
   6 ?   -3.1   0.0         8   7.6e+03      38      68 ..    4345    4388 ..    4329    4406 .. 0.66

  Alignments for each domain:
  == domain 1  score: 1.3 bits;  conditional E-value: 0.37
         TAN    3 ealrlLssskikeRnkaldeLkhllsskrnktslsdlkdkawheifeaLf 52  
                  ++++++  ++ + R+ a+ +L++l +++  +++ + l  ka+  +++ L 
  KOO24562.1 1711 NLVAEITTGNSEVRDHAAAQLRSLATQNHGQNQPDVLAAKAVEPLVKLLS 1760
                  78899999********************9988877888888888877765 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 1.9
         TAN    4 alrlLssskikeRnkaldeLkhllsskrnk 33  
                  +l+lLss ++   +k++  L +l++++r++
  KOO24562.1 1962 LLALLSSRSASAQSKSMAALAQLTRHNRDN 1991
                  5899***********************982 PP

  == domain 3  score: -1.1 bits;  conditional E-value: 2
         TAN    5 lrlLssskikeRnkaldeLkhllsskrnk 33  
                  l+ L s ++k +++a+  +k+l ++++n+
  KOO24562.1 2487 LDILDSASAKAKENAVGAIKELCRNSKNN 2515
                  67799*********************883 PP

  == domain 4  score: -1.3 bits;  conditional E-value: 2.3
         TAN    3 ealrlLssskikeRnkaldeLkhllsskrn 32  
                   +++lLss++   R++a+  L h+  +++ 
  KOO24562.1 3227 PLVALLSSGTTQARENAAGALWHMAIDRPI 3256
                  57899**************99999888877 PP

  == domain 5  score: 5.1 bits;  conditional E-value: 0.025
         TAN    2 kealrlLssskikeRnkaldeLkhllsskrnktsls 37  
                  +e+++lL s+k+  R+ a + L+++ ++++n+t+ s
  KOO24562.1 4034 QELVKLLASDKAAVRQRASEALTDMAADDKNSTT-S 4068
                  57899************************99322.2 PP

  == domain 6  score: -3.1 bits;  conditional E-value: 8
         TAN   38 dlkdkawheifeaLfklvekEkeaylkkkk.............s 68  
                   +k +++  +++aL +l+ +E +++  +k+             s
  KOO24562.1 4345 MHKADSYEHTCKALWHLAATEENQVAIAKAggiaplvallaseS 4388
                  57888999999999999999999997766666666666554432 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (4890 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       806  (0.0449551); expected 358.6 (0.02)
Passed bias filter:                      432  (0.024095); expected 358.6 (0.02)
Passed Vit filter:                        48  (0.00267723); expected 17.9 (0.001)
Passed Fwd filter:                        24  (0.00133861); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              19  [number of targets reported over threshold]
# CPU time: 2.19u 0.33s 00:00:02.52 Elapsed: 00:00:00.64
# Mc/sec: 23125.79
//
Query:       KOO24563.1  [L=3983]
Description: hypothetical protein Ctob_003055 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    8.3e-48  160.4  28.6    2.5e-05   24.3   0.0   18.0 18  TIG              IPT/TIG domain
    1.3e-14   53.9   0.0        1.2    9.1   0.0   10.8 11  TIG_plexin       TIG domain
    1.9e-09   37.8   0.0    4.8e-09   36.4   0.0    1.8  1  fn3              Fibronectin type III domain
     0.0013   19.3   0.0     0.0032   18.0   0.0    1.6  1  Pur_ac_phosph_N  Purple acid Phosphatase, N-terminal domain


Domain annotation for each model (and alignments):
>> TIG  IPT/TIG domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.8   0.0   8.8e-05      0.39       1      45 [.     143     188 ..     143     269 .. 0.75
   2 ?    4.1   0.1     0.011        50       6      23 ..     280     297 ..     279     306 .. 0.95
   3 !   24.3   0.0   5.6e-09   2.5e-05       1      61 [.    1155    1214 ..    1155    1236 .. 0.91
   4 !   16.8   0.0   1.2e-06    0.0052       3      80 ..    1249    1340 ..    1247    1342 .. 0.80
   5 ?    2.4   0.0     0.038   1.7e+02      34      72 ..    1415    1452 ..    1401    1463 .. 0.84
   6 ?   -1.0   0.0      0.42   1.9e+03       1      25 [.    1736    1758 ..    1736    1774 .. 0.87
   7 !   12.4   0.0   2.8e-05      0.12       1      42 [.    2005    2047 ..    2005    2063 .. 0.91
   8 ?    3.8   0.1     0.013        60       6      38 ..    2317    2348 ..    2313    2418 .. 0.58
   9 !   23.1   1.4   1.2e-08   5.6e-05       1      79 [.    2421    2510 ..    2421    2516 .. 0.82
  10 !   19.4   0.3   1.9e-07   0.00085      30      80 ..    2592    2642 ..    2573    2647 .. 0.81
  11 !    5.7   0.0    0.0036        16       7      30 ..    2656    2686 ..    2654    2751 .. 0.72
  12 ?    0.5   0.0      0.14   6.3e+02       5      39 ..    2759    2792 ..    2755    2794 .. 0.92
  13 ?    2.9   0.0     0.026   1.2e+02       7      85 .]    3032    3134 ..    3030    3134 .. 0.75
  14 !   13.3   0.0   1.5e-05     0.068       8      73 ..    3145    3214 ..    3143    3229 .. 0.82
  15 ?    1.7   0.0     0.062   2.8e+02       8      58 ..    3243    3311 ..    3239    3321 .. 0.67
  16 !   12.8   0.0     2e-05     0.092       5      41 ..    3616    3651 ..    3612    3709 .. 0.84
  17 ?   -4.3   0.0         4   1.8e+04      53      73 ..    3818    3838 ..    3817    3845 .. 0.85
  18 ?    3.5   0.1     0.017        75       7      84 ..    3861    3958 ..    3855    3959 .. 0.72

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 8.8e-05
         TIG   1 PvissisPnsgsasgGttititGtnF.gtnssdssvtiggtpctvt 45 
                 P++s + P+ g+  gGt++ ++G ++    +s++ +++g t +++t
  KOO24563.1 143 PTVSHVVPAAGPLRGGTLVRVHGADLvFGGTSVYACRFGQTVVPAT 188
                 99***********************987788888888888888777 PP

  == domain 2  score: 4.1 bits;  conditional E-value: 0.011
         TIG   6 isPnsgsasgGttititG 23 
                 +sP+sg+ +gGt + i+G
  KOO24563.1 280 VSPASGPLAGGTVVSIHG 297
                 69***************9 PP

  == domain 3  score: 24.3 bits;  conditional E-value: 5.6e-09
         TIG    1 PvissisPnsgsasgGttititGtnFgtnssdssvtiggtpctvtasvssttlvcttPpgp 61  
                  P +  isP+ g+  gGtt+ i+G ++ +    +++++g +++ ++    s t+ ct+Pp  
  KOO24563.1 1155 PRVLGISPTDGPLHGGTTVRIRGKHL-AHGAGYTCRFGAQNVSASFEAASETVLCTSPPAL 1214
                  77889*********************.***************99999***********986 PP

  == domain 4  score: 16.8 bits;  conditional E-value: 1.2e-06
         TIG    3 issisPnsgsasgGttititGtnFgtnssdssvtiggtpctvta............svssttlvcttPpgp..sgllnvsvlvdgaqlrsdn 80  
                  +s ++P++g+++gG +i+i+G ++   s  + +++ +++ +v+                  +++c +P+++  +g ++v v  +g+q +s++
  KOO24563.1 1249 LSHVHPSTGPIDGGIRINISGAGLVGGSAYMCCLVAESEPCVVRedgrspftpatfDEAFGHVTCRAPAVYndAGAYQVRVALNGQQYSSQP 1340
                  57799*******************888999999999888888776888865555444444556********988899999999996666654 PP

  == domain 5  score: 2.4 bits;  conditional E-value: 0.038
         TIG   34 svtiggtpctvtasvssttlvcttPpgpsgllnvsvlvd 72  
                   +++g++ ++++   s+++++ct+P   +++ +v++  +
  KOO24563.1 1415 ACRFGTAIVPAV-RRSDSEVTCTAPTALAAGASVVLAPR 1452
                  689999999999.************99988888877655 PP

  == domain 6  score: -1.0 bits;  conditional E-value: 0.42
         TIG    1 PvissisPnsgsasgGttititGtn 25  
                  P i+ i P sg++  G+t+ ++G  
  KOO24563.1 1736 PLITVIKPRSGVT--GSTVELRGAL 1758
                  89***********..****999965 PP

  == domain 7  score: 12.4 bits;  conditional E-value: 2.8e-05
         TIG    1 PvissisPnsgsasgGttititGtnF.gtnssdssvtiggtpc 42  
                  P+is + P+ g++ gG  + + G+++  +n s + ++ig + +
  KOO24563.1 2005 PIISRVLPAGGPVRGGAAVSVIGQHLgHSNHSAMECRIGASRS 2047
                  99************************99999*******98776 PP

  == domain 8  score: 3.8 bits;  conditional E-value: 0.013
         TIG    6 isPnsgsasgGttititGtnFgtnssdssvtig 38  
                   sP+ g +sgG +i i+Gt++ +     s+ +g
  KOO24563.1 2317 SSPALGHVSGGALIRINGTGL-DVGVGFSCAFG 2348
                  688889999999999999999.44444444444 PP

  == domain 9  score: 23.1 bits;  conditional E-value: 1.2e-08
         TIG    1 PvissisPnsgsasgGttititGtnF.......gtnssdssvtiggtpctvta.svssttlvcttPpgp...sgllnvsvlvdgaqlrsd 79  
                  Pvi+ ++P+sg+++gGtt++++Gt +       +t  +  +++++ t  t  + s s +tl c +   p   s+ +++ +  +g+ l++d
  KOO24563.1 2421 PVITEFTPSSGPVAGGTTLVVRGTQLdvevgwwSTPPPLARCVFNQTMQTPATfSRSANTLSCSSARSPsstSARVPFGISLNGQELTTD 2510
                  9*******************************************9887777777999999988766666443667777777777555555 PP

  == domain 10  score: 19.4 bits;  conditional E-value: 1.9e-07
         TIG   30 ssdssvtiggtpctvtasvssttlvcttPpgp.sgllnvsvlvdgaqlrsdn 80  
                  +s++++++g++ +++t  +ssttlvc+tP+++ +g++++ v  + ++ ++++
  KOO24563.1 2592 TSSPTCRFGEAVVPAT-VQSSTTLVCITPNTTmAGPVTLGVSLNAQDYSQGG 2642
                  7899************.***************96666666666663344444 PP

  == domain 11  score: 5.7 bits;  conditional E-value: 0.0036
         TIG    7 sPnsgsasgGttititGtnF.......gtns 30  
                  +P+ g++sgGt+i+ +G+++       +t +
  KOO24563.1 2656 EPTEGPVSGGTRILSRGHGLvpdgchsDTAR 2686
                  79******************77766654444 PP

  == domain 12  score: 0.5 bits;  conditional E-value: 0.14
         TIG    5 sisPnsgsasgGttititGtnFgtnssdssvtigg 39  
                  ++sP +g++ gGt + + G  +  +++ + + +gg
  KOO24563.1 2759 ALSPGNGPITGGTMLALFGASM-RDVDGLACFFGG 2792
                  78999*****************.999999999997 PP

  == domain 13  score: 2.9 bits;  conditional E-value: 0.026
         TIG    7 sPnsgsasgGttititGtnF.......gtnssdssvtiggtpctvta...........svssttl.........vcttPpgp...sgllnvsvlvdg 73  
                   P+ g+++gGt + ++  n         + s  +++++g+  + + +           s               +ct+P++    ++ +++ + ++ 
  KOO24563.1 3032 APTAGPVEGGTVVRVRVANYsstvgtlPDVSLALRCRFGNGLASADEftalavhwseaS-----GdgvsirvglECTAPSHLsagPEMVRLRISTN- 3122
                  58999999999999999999999999999999999999999999997777777444331.....2555667777*******964444444444444. PP

         TIG   74 aqlrsdnttftY 85  
                  aq+++d+ +f++
  KOO24563.1 3123 AQQFFDAANFSF 3134
                  599999999985 PP

  == domain 14  score: 13.3 bits;  conditional E-value: 1.5e-05
         TIG    8 PnsgsasgGttititGtnF...gtnssdssvtiggtpctvtasvssttlvcttPpgp.sgllnvsvlvdg 73  
                  P sg++ gG ++t++G  +     +   + +++gg ++  t+  ++  + c tP+   +g   v v+   
  KOO24563.1 3145 PRSGPTGGGALLTVRGWPMdsgMRSGGAYACRVGGVAVAGTYRLQPERIQCRTPALGvTGFTAVPVELSL 3214
                  889*************666555599999***************************987556666665544 PP

  == domain 15  score: 1.7 bits;  conditional E-value: 0.062
         TIG    8 PnsgsasgGttitit......GtnFgtnssdssvtiggtpctvta.............svssttlvcttP 58  
                  P+sg+a+gGt++ ++      G n+ t++ d+++ +g+    +                v++  l+c++P
  KOO24563.1 3243 PASGPANGGTLVEVHvsggglGANL-TETLDYRCAFGHVVRGLLDemlvegaavvpatRVDDGRLRCISP 3311
                  899*****99987653333333555.88899999888876666555555555555555666666666666 PP

  == domain 16  score: 12.8 bits;  conditional E-value: 2e-05
         TIG    5 sisPnsgsasgGttititGtnFgtnssdssvtiggtp 41  
                   i+P+s + +gGt++ti+G ++ +++s   + + +  
  KOO24563.1 3616 EITPSSAPRAGGTLLTIRGEGL-AEASAFECEFADGG 3651
                  79********************.88887777776655 PP

  == domain 17  score: -4.3 bits;  conditional E-value: 4
         TIG   53 lvcttPpgpsgllnvsvlvdg 73  
                  + c +P+ p+g+ ++++  +g
  KOO24563.1 3818 MLCASPALPGGEAPLQLALNG 3838
                  7899*****999999998887 PP

  == domain 18  score: 3.5 bits;  conditional E-value: 0.017
         TIG    7 sPnsgsasgGttititGtnF.........gtnssdssvtiggtpctvta...svssttlvcttPpgp..........sgllnvsvlvdgaqlrsdnt 81  
                   P+  ++  Gt+i++ G n+          t +  ++v++g   ++  +    +  +t++c++P  p            ++++ +  +g+q +  ++
  KOO24563.1 3861 VPAGATP--GTSIILVGENLggdglpgvnHTCRFGTRVVLGQLLVEPRVvgnQWRTNTVRCVVPEMPlasstaagqyVRSVPLRISLNGQQYSPEPV 3955
                  5666777..9**********988555555444445555555555555558999999999******99999999888555777777777777888888 PP

         TIG   82 tft 84  
                  +f+
  KOO24563.1 3956 RFS 3958
                  887 PP

>> TIG_plexin  TIG domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.0      0.82   3.7e+03      26      59 ..     175     229 ..     153     246 .. 0.67
   2 !    9.1   0.0   0.00028       1.2       2      54 ..    1162    1214 ..    1161    1234 .. 0.76
   3 ?    1.0   0.0     0.096   4.3e+02      28      53 ..    1415    1440 ..    1408    1464 .. 0.86
   4 ?   -0.9   0.0      0.38   1.7e+03      65      89 .]    2395    2419 ..    2340    2419 .. 0.73
   5 !    4.9   0.0    0.0057        26      27      53 ..    2460    2488 ..    2440    2515 .. 0.81
   6 !    7.9   0.0   0.00069       3.1      21      55 ..    2589    2623 ..    2573    2632 .. 0.77
   7 ?    3.0   0.0     0.022     1e+02      16      89 .]    3054    3135 ..    3045    3135 .. 0.71
   8 ?    0.5   0.0      0.14   6.1e+02      24      53 ..    3170    3200 ..    3155    3230 .. 0.69
   9 ?    2.9   0.0     0.025   1.1e+02      15      54 ..    3258    3314 ..    3243    3318 .. 0.71
  10 ?   -0.2   0.0      0.22     1e+03       1      53 [.    3618    3691 ..    3618    3697 .. 0.66
  11 !    5.8   0.0    0.0031        14      28      75 ..    3889    3946 ..    3877    3959 .. 0.75

  Alignments for each domain:
  == domain 1  score: -2.0 bits;  conditional E-value: 0.82
  TIG_plexin  26 klkCvFgdlee....................seatvs.dnkvtCdtPkpeelppi 59 
                  ++C+Fg++ +                     +++ + +  v C +P +++  +i
  KOO24563.1 175 VYACRFGQTVVpatlteaawpehvptrpirlPRDEGDgRAVVECISPRARQARAI 229
                 5788887775555555566666666555554333333467788888887776666 PP

  == domain 2  score: 9.1 bits;  conditional E-value: 0.00028
  TIG_plexin    2 PsnisvsttseltltvenlpalseklkCvFgdleeseatvs.dnkvtCdtPkpe 54  
                  P+  +++  +++++  ++l + +++++C+Fg  ++s++    +++v C++P++ 
  KOO24563.1 1162 PTDGPLHGGTTVRIRGKHLAH-GAGYTCRFGAQNVSASFEAaSETVLCTSPPAL 1214
                  555666677788888888865.669********999987445*********985 PP

  == domain 3  score: 1.0 bits;  conditional E-value: 0.096
  TIG_plexin   28 kCvFgdleeseatvsdnkvtCdtPkp 53  
                  +C+Fg++ + + + sd++vtC+ P +
  KOO24563.1 1415 ACRFGTAIVPAVRRSDSEVTCTAPTA 1440
                  6*****988888899*******9976 PP

  == domain 4  score: -0.9 bits;  conditional E-value: 0.38
  TIG_plexin   65 hvtvkLsirsketgkdlastnFtFY 89  
                  + +v+L ++ + ++ ++a  n+tF+
  KOO24563.1 2395 ASSVQLRVSLNAQQFSVAALNYTFF 2419
                  4457777777777899999999998 PP

  == domain 5  score: 4.9 bits;  conditional E-value: 0.0057
  TIG_plexin   27 lkCvFgdleeseatvs..dnkvtCdtPkp 53  
                   +CvF+++ +++at+s   n+++C++  +
  KOO24563.1 2460 ARCVFNQTMQTPATFSrsANTLSCSSARS 2488
                  58************88789*****98765 PP

  == domain 6  score: 7.9 bits;  conditional E-value: 0.00069
  TIG_plexin   21 palseklkCvFgdleeseatvs.dnkvtCdtPkpee 55  
                  p+ +++ +C+Fg++ + +atv+ ++++ C tP+++ 
  KOO24563.1 2589 PEATSSPTCRFGEA-VVPATVQsSTTLVCITPNTTM 2623
                  4457788******9.66666666*********9876 PP

  == domain 7  score: 3.0 bits;  conditional E-value: 0.022
  TIG_plexin   16 tvenlpalseklkCvFgdlee...............seatvs.dnkvtCdtPkpeelppipegkdhvtvkLsirsketgkdlastnFtFY 89  
                  tv  lp++s  l+C+Fg+                  s + vs + ++ C+ P++ +  p         v+L i+ + +++ +  +nF+FY
  KOO24563.1 3054 TVGTLPDVSLALRCRFGNGLAsadeftalavhwseaSGDGVSiRVGLECTAPSHLSAGP-------EMVRLRISTN-AQQFFDAANFSFY 3135
                  67889***********7554445566677777755433334469999999998855544.......3577777776.6778888888888 PP

  == domain 8  score: 0.5 bits;  conditional E-value: 0.14
  TIG_plexin   24 seklkCvFgdleese.atvsdnkvtCdtPkp 53  
                  ++ ++C+ g + ++   +++ ++++C tP+ 
  KOO24563.1 3170 GGAYACRVGGVAVAGtYRLQPERIQCRTPAL 3200
                  67899999999887624588*********87 PP

  == domain 9  score: 2.9 bits;  conditional E-value: 0.025
  TIG_plexin   15 ltvenlpal.se..klkCvFgdlee..............seatvsdnkvtCdtPkpe 54  
                  ++   l a  +e  +++C Fg++                 + +v+d++++C +P +e
  KOO24563.1 3258 VSGGGLGANlTEtlDYRCAFGHVVRglldemlvegaavvPATRVDDGRLRCISPTAE 3314
                  55555554333334899***8776677778888888884555699*********875 PP

  == domain 10  score: -0.2 bits;  conditional E-value: 0.22
  TIG_plexin    1 qPsnisvsttseltltvenlpalseklkCvFgdlee......................seatvsdnkvtCdtPkp 53  
                  +Ps++++   + lt+  e l + s  ++C F d  +                      +      ++++C tP +
  KOO24563.1 3618 TPSSAPRAGGTLLTIRGEGLAEAS-AFECEFADGGTaderlrtaaellatstinnnnsTDGAGGAGTLRCPTPTV 3691
                  588888888888888888888876.78999955544444555566666666665433233334488899999876 PP

  == domain 11  score: 5.8 bits;  conditional E-value: 0.0031
  TIG_plexin   28 kCvFgdlee..........seatvsdnkvtCdtPkpeelppipegkdhvtvkLsirsk 75  
                  +C+Fg+  +            ++   n+v+C  P++ +   + +g+   +v+L i+ +
  KOO24563.1 3889 TCRFGTRVVlgqllveprvVGNQWRTNTVRCVVPEMPLASSTAAGQYVRSVPLRISLN 3946
                  67776444444455433323344459***************************99876 PP

>> fn3  Fibronectin type III domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.4   0.0   1.1e-12   4.8e-09       2      85 .]      41     131 ..      40     131 .. 0.79

  Alignments for each domain:
  == domain 1  score: 36.4 bits;  conditional E-value: 1.1e-12
                 CECEEEEEEESSSEEEEEEE-CS.SSSSTEEEEEEEEEETTSTS......TEEEEEECSTSS.EEEEESSSTTEEEEEEEEEEETSEEEEEE CS
         fn3   2 aPsnlsvsevtstsltvsWeppk.dgggpitgYeveyrekgsee......ewneftvprttt.svtltgLkpgteYevrVqavngggegpes 85 
                 +P  + + + +stsl+vsW  p+ dgg+p+  Y++   +   e+      + +   +p++   ++t++ L+p+t+Y++ ++a+n++g++++s
  KOO24563.1  41 QPAPPVFVASNSTSLSVSWAMPEvDGGSPVLWYTLYGGDA-AESlrplydPFRAGAAPEPNVrNFTIRRLRPSTQYRFMIAARNAVGQSKFS 131
                 7888889999*************************65555.4445787752222223333224************************99887 PP

>> Pur_ac_phosph_N  Purple acid Phosphatase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.0   0.0   7.1e-07    0.0032      10      94 .]      49     138 ..      45     138 .. 0.80

  Alignments for each domain:
  == domain 1  score: 18.0 bits;  conditional E-value: 7.1e-07
  Pur_ac_phosph_N  10 edtstsmtvsWitpektkksvvrygtssda.lestaeatsstyettnyksgyshkatltgLepgttYyYrvgddeg....gwSevysfkT 94 
                      +++sts++vsW  pe ++ s v + t  +    ++    +  + +    + ++ + t++ L+p+t+Y + + +++     ++S++ +f T
       KOO24563.1  49 ASNSTSLSVSWAMPEVDGGSPVLWYTLYGGdAAESLRPLYDPFRAGAAPEPNVRNFTIRRLRPSTQYRFMIAARNAvgqsKFSDTATFST 138
                      5589***********7766666666665551555555567777779999**********************9998888889999999988 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (3983 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       266  (0.0148363); expected 358.6 (0.02)
Passed bias filter:                      211  (0.0117686); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 1.37u 0.31s 00:00:01.68 Elapsed: 00:00:00.52
# Mc/sec: 22833.68
//
Query:       KOO24564.1  [L=436]
Description: la-related protein 1b [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.3e-13   50.0   0.0    4.9e-13   48.9   0.0    1.6  1  La        La domain
    2.2e-08   34.1   0.1      1e-07   31.9   0.0    2.2  2  RRM_3     RNA binding motif
    0.00058   19.7   0.0     0.0013   18.6   0.0    1.5  1  PAZ       PAZ domain
  ------ inclusion threshold ------
      0.015   15.1   0.0      0.036   13.9   0.0    1.7  1  RRM_1     RNA recognition motif. (a.k.a. RRM, RBD, or RNP dom


Domain annotation for each model (and alignments):
>> La  La domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.9   0.0   1.1e-16   4.9e-13       2      49 ..      20      65 ..      19      84 .. 0.85

  Alignments for each domain:
  == domain 1  score: 48.9 bits;  conditional E-value: 1.1e-16
                HHHHHHHHHTT-TTT-HHHHHHHTTSTTS---HHHHHTSSHHHHHHSS CS
          La  2 lkQvEfYFSdeNLpkDkFLrkkmdkdpegwVplsliasfkrmkkltkd 49
                l+Q+E+YFSd  Lp+D+FL+++md    g +p++++as  r+ ++ ++
  KOO24564.1 20 LRQIEYYFSDLSLPYDDFLKSQMDA--SGAIPVAVLASSPRVISMCEA 65
                79**********************9..8**************988763 PP

>> RRM_3  RNA binding motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.1         1   4.5e+03      56      93 ..     200     212 ..     167     220 .. 0.60
   2 !   31.9   0.0   2.2e-11     1e-07       3      60 ..     256     313 ..     254     324 .. 0.91

  Alignments for each domain:
  == domain 1  score: -2.3 bits;  conditional E-value: 1
                 HHHHC-B-CCTSSEEEEE--HHHHHHHHHHHHHHHHHC CS
       RRM_3  56 kateaklkikdaevtlelLeGeeEkeywkkiledkqkk 93 
                 k +e                         +ile+kqk+
  KOO24564.1 200 KQKE-------------------------TILEQKQKR 212
                 3333.........................344444444 PP

  == domain 2  score: 31.9 bits;  conditional E-value: 2.2e-11
                 EEEEEE-SSS--HHHHHHHCHCCS-ECEEEE-TTSSEEEEEESSHHHHHHHHHHHHHC CS
       RRM_3   3 ilklsGlnkelsredikellsklgevayvdyekgdkegevrFkedeeakkalekatea 60 
                 +lk++ ++ + sre+i  l + +g+va++++e+g +e+ +rF+++e+a ++le++  a
  KOO24564.1 256 LLKVESIGPDASRETISALCEPHGKVAFIEFERGLSEAMLRFESAESATQVLEALSGA 313
                 7899999**********************************************98776 PP

>> PAZ  PAZ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.6   0.0   2.9e-07    0.0013      17      64 ..     373     418 ..     361     429 .. 0.85

  Alignments for each domain:
  == domain 1  score: 18.6 bits;  conditional E-value: 2.9e-07
                 S----HHCCCCTTBEEEETTTTS-CEEEEEEEESS--TTSEECCTTCT CS
         PAZ  17 rkdrkkaaealkgliVmtwynnrnktyyvadittdlapsstFpdkdke 64 
                 +++ + + + lkg ++  ++++  +t++  di+t+l++ s+Fp  d +
  KOO24564.1 373 DDFSEPVLKVLKGIKISSTHCR--RTFTLRDIDTELCSASMFPWVDAD 418
                 67788899************88..*******************98755 PP

>> RRM_1  RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.0   8.1e-06     0.036       3      62 ..     259     313 ..     257     320 .. 0.89

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 8.1e-06
                 EESETTTSSHHHHHHHHHTTSCEEEEEEEEETTTSEEEEEEEEESSHHHHHHHHHHHTTE CS
       RRM_1   3 VgnLppdvteeeLkelFskfGpiksiklvrdetgkskgfafVeFeskedAekAlealngk 62 
                 V+ + pd+++e++++l ++ G++  i+  r         a  +Fes e+A++ leal g 
  KOO24564.1 259 VESIGPDASRETISALCEPHGKVAFIEFER-----GLSEAMLRFESAESATQVLEALSGA 313
                 78899******************7777777.....599*******************994 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (436 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       759  (0.0423336); expected 358.6 (0.02)
Passed bias filter:                      469  (0.0261587); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.53u 0.27s 00:00:00.80 Elapsed: 00:00:00.42
# Mc/sec: 3118.18
//
Query:       KOO24565.1  [L=393]
Description: hypothetical protein Ctob_003056 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    5.1e-07   28.8   0.9       0.12   12.0   0.0    3.4  3  EF-hand_1      EF hand
    7.4e-06   25.5   1.4       0.57   10.3   0.1    3.4  3  EF-hand_6      EF-hand domain
    0.00032   20.0   3.1        1.8    8.2   0.0    3.5  3  EF-hand_5      EF hand
    0.00046   20.0   0.1       0.17   11.7   0.1    2.4  2  EF-hand_8      EF-hand domain pair
     0.0011   19.3   1.4      0.022   15.2   1.4    2.5  1  EF-hand_7      EF-hand domain pair
     0.0036   17.4   0.0     0.0076   16.3   0.0    1.6  1  Asp-B-Hydro_N  Aspartyl beta-hydroxylase N-terminal region
  ------ inclusion threshold ------
        0.1   13.1   0.8        0.1   13.1   0.8    3.0  3  HisKA_3        Histidine kinase


Domain annotation for each model (and alignments):
>> EF-hand_1  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.9   0.0   0.00095       2.4       9      23 ..     142     156 ..     142     158 .. 0.88
   2 !    5.7   0.0    0.0046        12      13      26 ..     193     206 ..     192     208 .. 0.91
   3 !   12.0   0.0   4.7e-05      0.12       2      26 ..     214     238 ..     213     240 .. 0.85

  Alignments for each domain:
  == domain 1  score: 7.9 bits;  conditional E-value: 0.00095
                 HTTTSSSEEEHHHHH CS
   EF-hand_1   9 fDkDgdGkIdfeEfk 23 
                 +D+DgdG+++ +++ 
  KOO24565.1 142 LDQDGDGQLTQKDLA 156
                 5*********99985 PP

  == domain 2  score: 5.7 bits;  conditional E-value: 0.0046
                 SSSEEEHHHHHHHH CS
   EF-hand_1  13 gdGkIdfeEfkell 26 
                 gdGkI+  E++ +l
  KOO24565.1 193 GDGKINATELQVIL 206
                 8*********9886 PP

  == domain 3  score: 12.0 bits;  conditional E-value: 4.7e-05
                 HHHHHHHHTTTSSSEEEHHHHHHHH CS
   EF-hand_1   2 lkeiFrefDkDgdGkIdfeEfkell 26 
                   ei++ +D Dg+G +d++E  +ll
  KOO24565.1 214 AAEIIARLDADGNGDLDLNEASDLL 238
                 569****************976665 PP

>> EF-hand_6  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.3   0.1   0.00022      0.57       8      23 ..     141     156 ..     140     157 .. 0.88
   2 !    5.8   0.0     0.006        15      12      26 ..     192     206 ..     187     209 .. 0.86
   3 !    6.7   0.0     0.003       7.7       8      27 ..     220     239 ..     213     245 .. 0.85

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.00022
   EF-hand_6   8 lfDkdgdGkidaeElr 23 
                  +D+dgdG++++++l 
  KOO24565.1 141 WLDQDGDGQLTQKDLA 156
                 58***********995 PP

  == domain 2  score: 5.8 bits;  conditional E-value: 0.006
   EF-hand_6  12 dgdGkidaeElrkal 26 
                  gdGki+a El+ +l
  KOO24565.1 192 GGDGKINATELQVIL 206
                 69*********9887 PP

  == domain 3  score: 6.7 bits;  conditional E-value: 0.003
   EF-hand_6   8 lfDkdgdGkidaeElrkalr 27 
                  +D dg+G +d +E  ++l+
  KOO24565.1 220 RLDADGNGDLDLNEASDLLS 239
                 69************887776 PP

>> EF-hand_5  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.3   0.1    0.0058        15       8      21 ..     142     155 ..     142     157 .. 0.82
   2 !    8.2   0.0    0.0007       1.8      12      23 ..     193     204 ..     193     206 .. 0.89
   3 !    4.9   0.3    0.0076        20       7      20 ..     220     233 ..     216     238 .. 0.85

  Alignments for each domain:
  == domain 1  score: 5.3 bits;  conditional E-value: 0.0058
                 H-SS-SSCE-HHHH CS
   EF-hand_5   8 iDlNgDGkIskeEL 21 
                 +D +gDG+++   L
  KOO24565.1 142 LDQDGDGQLTQKDL 155
                 69******997766 PP

  == domain 2  score: 8.2 bits;  conditional E-value: 0.0007
                 -SSCE-HHHHHH CS
   EF-hand_5  12 gDGkIskeELkt 23 
                 gDGkI++ EL+ 
  KOO24565.1 193 GDGKINATELQV 204
                 9*********96 PP

  == domain 3  score: 4.9 bits;  conditional E-value: 0.0076
                 HH-SS-SSCE-HHH CS
   EF-hand_5   7 aiDlNgDGkIskeE 20 
                 ++D++g G ++  E
  KOO24565.1 220 RLDADGNGDLDLNE 233
                 69*********998 PP

>> EF-hand_8  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.8   0.0    0.0049        13      35      48 ..     142     155 ..     137     158 .. 0.89
   2 !   11.7   0.1   6.7e-05      0.17       2      48 ..     194     234 ..     193     241 .. 0.87

  Alignments for each domain:
  == domain 1  score: 5.8 bits;  conditional E-value: 0.0049
   EF-hand_8  35 fDtdgdGkisfeEF 48 
                 +D+dgdG +++++ 
  KOO24565.1 142 LDQDGDGQLTQKDL 155
                 6**********996 PP

  == domain 2  score: 11.7 bits;  conditional E-value: 6.7e-05
   EF-hand_8   2 kgkItreelrrilrilglkkglseeevdilfrefDtdgdGkisfeEF 48 
                 +gkI  +el+ il   gl    + ee+ +++ ++D dg+G ++++E 
  KOO24565.1 194 DGKINATELQVIL---GLD---TIEEAAEIIARLDADGNGDLDLNEA 234
                 899********88...999...78889999999***********995 PP

>> EF-hand_7  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   1.4   8.8e-06     0.022      11      65 ..     142     233 ..     140     239 .. 0.72

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 8.8e-06
   EF-hand_7  11 lDtdgdgyldkeellr......................llrkifqga..................gegsklsd..........eelellfkefDtdkdG 59 
                 lD+dgdg l++ +l r                                                        +          ee  +++  +D d++G
  KOO24565.1 142 LDQDGDGQLTQKDLARrpevetpdpyraaaararrvqqE-------LretqsfrhaaggdgkinaT------ElqvilgldtiEEAAEIIARLDADGNG 227
                 8*************999****999888876655554441.......13333444555554544440......244555555558899************ PP

   EF-hand_7  60 visfdE 65 
                  ++++E
  KOO24565.1 228 DLDLNE 233
                 ***998 PP

>> Asp-B-Hydro_N  Aspartyl beta-hydroxylase N-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.0     3e-06    0.0076      43     101 ..     216     277 ..     203     315 .. 0.73

  Alignments for each domain:
  == domain 1  score: 16.3 bits;  conditional E-value: 3e-06
  Asp-B-Hydro_N  43 gkLgvYDaDGDGDFDVdDAKvLLglkekstse...ssvpeeeaevvaeeeeqlaeekekqkv 101
                    + ++  DaDG GD D ++A  LL l+ k        s+++ eae        +a+ + k++v
     KOO24565.1 216 EIIARLDADGNGDLDLNEASDLLSLRAKLNAAegaDSPTKSEAEQARAAARAAATMARKVQV 277
                    556667*******************9998766343334445555544444444444444333 PP

>> HisKA_3  Histidine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.0       3.3   8.4e+03      14      23 ..      45      54 ..      34      70 .. 0.55
   2 ?    4.5   0.7      0.02        50      27      59 ..     151     184 ..     148     190 .. 0.76
   3 ?   13.1   0.8     4e-05       0.1      16      66 ..     236     289 ..     234     291 .. 0.87

  Alignments for each domain:
  == domain 1  score: -2.6 bits;  conditional E-value: 3.3
                HHHHHHHHHH CS
     HisKA_3 14 gqsLsaiklq 23
                + sL++++ q
  KOO24565.1 45 AASLASTSSQ 54
                3333333333 PP

  == domain 2  score: 4.5 bits;  conditional E-value: 0.02
                 HHHHTTT-HH.HHHHHHHHHHHHHHHHHHHHHHH CS
     HisKA_3  27 akrllekdpe.kaaeqlreieelarealqevRrl 59 
                  ++ l+++pe ++ +  r+++++ar+ +qe+R++
  KOO24565.1 151 TQKDLARRPEvETPDPYRAAAARARRVQQELRET 184
                 5666777777777788888888888888888875 PP

  == domain 3  score: 13.1 bits;  conditional E-value: 4e-05
                 HHHHHHHHHHHHHHHT...TT-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTH CS
     HisKA_3  16 sLsaiklqlelakrll...ekdpekaaeqlreieelarealqevRrllhnLrpa 66 
                  L +++++l +a+++    ++++e+a++++r+++++ar+ + +v  ++++L p+
  KOO24565.1 236 DLLSLRAKLNAAEGADsptKSEAEQARAAARAAATMARKVQVDVQTFVERLSPP 289
                 588999999999987666566677***************************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (393 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       942  (0.0525406); expected 358.6 (0.02)
Passed bias filter:                      389  (0.0216967); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.49u 0.26s 00:00:00.75 Elapsed: 00:00:00.41
# Mc/sec: 2890.55
//
Query:       KOO24566.1  [L=85]
Description: selenoprotein h [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (85 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       231  (0.0128842); expected 358.6 (0.02)
Passed bias filter:                      201  (0.0112109); expected 358.6 (0.02)
Passed Vit filter:                         9  (0.00050198); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.23s 00:00:00.55 Elapsed: 00:00:00.37
# Mc/sec: 683.60
//
Query:       KOO24567.1  [L=957]
Description: pbs lyase heat-like repeat protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.2e-26   90.4  27.2      0.018   15.3   0.1   11.5 11  HEAT            HEAT repeat
    1.5e-22   79.8  31.6    3.5e-06   27.3   2.8    7.9  8  HEAT_2          HEAT repeats
    6.1e-20   71.3  32.8     0.0019   18.7   0.2    8.8  8  HEAT_EZ         HEAT-like repeat
    1.1e-09   38.5  10.0     0.0025   17.9   0.0    6.3  8  Cnd1            non-SMC mitotic condensation complex subunit 
    3.3e-08   33.1   0.0    5.3e-08   32.4   0.0    1.2  1  ART             NAD:arginine ADP-ribosyltransferase
    1.1e-06   27.5   1.9    0.00025   19.8   0.9    3.5  2  Adaptin_N       Adaptin N terminal region
    0.00011   21.6   0.0    0.00019   20.8   0.0    1.3  1  ADPrib_exo_Tox  ADP-ribosyltransferase exoenzyme
     0.0007   20.2   1.1        8.5    7.0   0.1    5.6  6  Vac14_Fab1_bd   Vacuolar 14 Fab1-binding region
  ------ inclusion threshold ------
      0.027   14.2   0.0      0.077   12.8   0.0    1.7  1  Dimer_Tnp_hAT   hAT family C-terminal dimerisation region
       0.14   12.3  13.9        5.6    7.2   0.1    6.9  9  Arm             Armadillo/beta-catenin-like repeat
       0.57    9.7   4.7        4.4    6.8   0.1    4.1  6  CLASP_N         CLASP N terminal
        1.3    9.9  21.8        8.4    7.4   0.0    8.3  8  HEAT_PBS        PBS lyase HEAT-like repeat
        6.7    6.4  11.9          7    6.3   0.0    5.4  6  DUF4042         Domain of unknown function (DUF4042)


Domain annotation for each model (and alignments):
>> HEAT  HEAT repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.2   0.2   0.00054      0.75       4      29 ..     552     577 ..     551     579 .. 0.91
   2 !   13.0   0.1   7.2e-05     0.099       6      27 ..     588     609 ..     586     612 .. 0.90
   3 ?    5.1   0.0     0.025        34      14      27 ..     633     646 ..     632     649 .. 0.87
   4 !   13.4   0.0   5.3e-05     0.074       5      30 ..     658     683 ..     656     684 .. 0.90
   5 !   15.3   0.1   1.3e-05     0.018       5      29 ..     693     716 ..     690     718 .. 0.87
   6 !    7.9   0.0    0.0029       4.1       4      27 ..     723     745 ..     721     747 .. 0.84
   7 ?    5.3   0.1     0.021        29       8      27 ..     760     779 ..     754     780 .. 0.81
   8 !    7.1   0.1    0.0056       7.8       6      28 ..     792     814 ..     788     816 .. 0.83
   9 !   11.5   0.2   0.00021      0.29       2      24 ..     865     887 ..     865     891 .. 0.93
  10 ?    2.0   0.0      0.23   3.2e+02       5      27 ..     889     912 ..     888     916 .. 0.68
  11 !    9.3   0.1    0.0011       1.5       5      29 ..     924     948 ..     922     948 .. 0.91

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.00054
                 HHHHHHT-SSHHHHHHHHHHHHHHHH CS
        HEAT   4 lllkllsDpspeVReaAakaLgalae 29 
                 +++kll+++ ++VR+aA++aL +l e
  KOO24567.1 552 AIVKLLRHDLSNVRCAALEALEKLTE 577
                 68999****************99987 PP

  == domain 2  score: 13.0 bits;  conditional E-value: 7.2e-05
                 HHHHT-SSHHHHHHHHHHHHHH CS
        HEAT   6 lkllsDpspeVReaAakaLgal 27 
                 + ll+D++  VR+aA+++L a+
  KOO24567.1 588 VPLLRDEEEAVRMAAVQTLRAM 609
                 6799***************986 PP

  == domain 3  score: 5.1 bits;  conditional E-value: 0.025
                 HHHHHHHHHHHHHH CS
        HEAT  14 peVReaAakaLgal 27 
                 +eVR+aA+ aLg l
  KOO24567.1 633 SEVRRAAVMALGLL 646
                 58*********966 PP

  == domain 4  score: 13.4 bits;  conditional E-value: 5.3e-05
                 HHHHHT-SSHHHHHHHHHHHHHHHHC CS
        HEAT   5 llkllsDpspeVReaAakaLgalaev 30 
                 ++  l Dp++ VR  +++ Lg+l+++
  KOO24567.1 658 IVPRLDDPNAAVRTVCLEVLGKLSQG 683
                 67789******************986 PP

  == domain 5  score: 15.3 bits;  conditional E-value: 1.3e-05
                 HHHHHT-SSHHHHHHHHHHHHHHHH CS
        HEAT   5 llkllsDpspeVReaAakaLgalae 29 
                 +lk l+D++  VR aA+ +Lg++a 
  KOO24567.1 693 MLK-LEDEDEAVRLAAVATLGQVAA 716
                 567.79****************985 PP

  == domain 6  score: 7.9 bits;  conditional E-value: 0.0029
                 HHHHHHT-SSHHHHHHHHHHHHHH CS
        HEAT   4 lllkllsDpspeVReaAakaLgal 27 
                 ++ +  ++p + VReaA++ Lg+l
  KOO24567.1 723 IIAR-ATHPRMGVREAAVLLLGKL 745
                 4445.699**************87 PP

  == domain 7  score: 5.3 bits;  conditional E-value: 0.021
                 HHT-SSHHHHHHHHHHHHHH CS
        HEAT   8 llsDpspeVReaAakaLgal 27 
                  + D + +VR+aA+++L  l
  KOO24567.1 760 RIADVEVRVRAAALQTLQSL 779
                 5678899*********9865 PP

  == domain 8  score: 7.1 bits;  conditional E-value: 0.0056
                 HHHHT-SSHHHHHHHHHHHHHHH CS
        HEAT   6 lkllsDpspeVReaAakaLgala 28 
                 +++l+Dps++VR  A+  + +l+
  KOO24567.1 792 VRCLQDPSARVRIGAVDVMDKLL 814
                 689*********99998777665 PP

  == domain 9  score: 11.5 bits;  conditional E-value: 0.00021
                 HHHHHHHHT-SSHHHHHHHHHHH CS
        HEAT   2 lPlllkllsDpspeVReaAakaL 24 
                 +P l+++l+D+++ VR+ A+ aL
  KOO24567.1 865 VPQLVHCLRDEDAIVRQRAISAL 887
                 699******************98 PP

  == domain 10  score: 2.0 bits;  conditional E-value: 0.23
                 HHHHHT-SSHHH.HHHHHHHHHHH CS
        HEAT   5 llkllsDpspeV.ReaAakaLgal 27 
                 ++ +++D +  V R+a+++a g+l
  KOO24567.1 889 IVACIEDRDDGVrRAASLWATGKL 912
                 677889*99999566666665555 PP

  == domain 11  score: 9.3 bits;  conditional E-value: 0.0011
                 HHHHHT-SSHHHHHHHHHHHHHHHH CS
        HEAT   5 llkllsDpspeVReaAakaLgalae 29 
                 + + l Dp  +VR +A+ aL++la+
  KOO24567.1 924 IATRLDDPILSVRLSAVGALAHLAK 948
                 67789*****************996 PP

>> HEAT_2  HEAT repeats
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.0       6.2   8.5e+03      23      40 ..      98     112 ..      90     116 .. 0.50
   2 !   10.3   0.2   0.00053      0.73      31      62 ..     548     579 ..     529     586 .. 0.82
   3 !   22.0   2.6   1.2e-07   0.00016       2      67 ..     551     617 ..     550     624 .. 0.82
   4 !   20.6   0.1   3.2e-07   0.00044      14      70 ..     633     692 ..     617     695 .. 0.79
   5 !   27.3   2.8   2.5e-09   3.5e-06       8      87 ..     696     776 ..     689     777 .. 0.89
   6 !   17.0   0.8   4.2e-06    0.0058       8      58 ..     761     813 ..     754     847 .. 0.85
   7 !    9.9   0.1    0.0007      0.97      31      55 ..     863     887 ..     852     891 .. 0.85
   8 ?    4.1   0.6     0.043        60      36      87 ..     889     943 ..     887     944 .. 0.62

  Alignments for each domain:
  == domain 1  score: -2.8 bits;  conditional E-value: 6.2
      HEAT_2  23 aLgrignpealpaLvell 40 
                 aLg++g+   ++aLv+ll
  KOO24567.1  98 ALGSKGS---RAALVRLL 112
                 3333333...34444444 PP

  == domain 2  score: 10.3 bits;  conditional E-value: 0.00053
      HEAT_2  31 ealpaLvellededpavRraaaeaLgaigdpe 62 
                 +  +a+v+ll+++ ++vR aa eaL ++ + +
  KOO24567.1 548 DHADAIVKLLRHDLSNVRCAALEALEKLTEAQ 579
                 6789*********************9987655 PP

  == domain 3  score: 22.0 bits;  conditional E-value: 1.2e-07
      HEAT_2   2 daLlqalendpdpevrraairaLgrignpea...lpaLvellededpavRraaaeaLgaigdpealpaL 67 
                 da +++l ++   +vr aa++aL ++ + ++    + +v+ll+de++avR+aa+++L a++++ +l++L
  KOO24567.1 551 DAIVKLL-RHDLSNVRCAALEALEKLTEAQLsphGASVVPLLRDEEEAVRMAAVQTLRAMDSS-TLASL 617
                 5778889.78888***********77776664457899*********************9986.55555 PP

  == domain 4  score: 20.6 bits;  conditional E-value: 3.2e-07
      HEAT_2  14 pevrraairaLg...rignpealpaLvellededpavRraaaeaLgaigdpealpaLkel 70 
                  evrraa++aLg   + +  ++  a+v+ l+d+++avR    e Lg++     lp+   +
  KOO24567.1 633 SEVRRAAVMALGlleQGKLSQYTHAIVPRLDDPNAAVRTVCLEVLGKLSQGGLLPHVSSM 692
                 37**********6643345688*************************9877777776665 PP

  == domain 5  score: 27.3 bits;  conditional E-value: 2.5e-09
      HEAT_2   8 lendpdpevrraairaLgrignpealpaLvellededpavRraaaeaLgaig...dpealpaLkellddddddvvReaAaeaL 87 
                 l +d+d++vr aa+ +Lg+ +       ++  ++++ + vR+aa+  Lg++    + + + +  ++ + d + +vR+aA+++L
  KOO24567.1 696 L-EDEDEAVRLAAVATLGQVAASIGKGPIIARATHPRMGVREAAVLLLGKLEpkdLADRIGVVVDRIA-DVEVRVRAAALQTL 776
                 6.8************************************************73324889******997.577778****9998 PP

  == domain 6  score: 17.0 bits;  conditional E-value: 4.2e-06
      HEAT_2   8 lendpdpevrraairaLgrignpea...lpaLvellededpavRraaaeaLgai 58 
                 +  d +  vr+aa+++L ++ + e+   +++ v++l+d++++vR  a++ + ++
  KOO24567.1 761 I-ADVEVRVRAAALQTLQSLEPLELvkhVETAVRCLQDPSARVRIGAVDVMDKL 813
                 5.678889**********999985555599*******************99765 PP

  == domain 7  score: 9.9 bits;  conditional E-value: 0.0007
      HEAT_2  31 ealpaLvellededpavRraaaeaL 55 
                 +++p Lv +l+ded+ vR+ a+ aL
  KOO24567.1 863 RYVPQLVHCLRDEDAIVRQRAISAL 887
                 6789999999999999999999998 PP

  == domain 8  score: 4.1 bits;  conditional E-value: 0.043
      HEAT_2  36 LvellededpavRraaa.eaLgaigd...pealpaLkellddddddvvReaAaeaL 87 
                 +v ++ed d  vRraa  +a g++g       ++a + +ld d+   vR +A+ aL
  KOO24567.1 889 IVACIEDRDDGVRRAASlWATGKLGPgllGLHAAAIATRLD-DPILSVRLSAVGAL 943
                 45667888888888887458888874222334666666664.45666677776666 PP

>> HEAT_EZ  HEAT-like repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.0   0.3    0.0031       4.2      23      55 .]     547     575 ..     539     575 .. 0.72
   2 !   10.7   0.0   0.00043      0.59      34      55 .]     588     609 ..     582     609 .. 0.88
   3 !   18.7   0.2   1.4e-06    0.0019       2      55 .]     634     680 ..     633     680 .. 0.87
   4 !   12.3   0.1   0.00013      0.18      21      54 ..     684     713 ..     676     714 .. 0.87
   5 !   12.0   1.3   0.00016      0.23       3      54 ..     734     778 ..     732     779 .. 0.95
   6 !    9.4   1.1    0.0011       1.5       2      49 ..     767     807 ..     766     809 .. 0.90
   7 !    9.7   0.1   0.00087       1.2      22      52 ..     861     887 ..     850     887 .. 0.73
   8 !   14.7   1.2   2.5e-05     0.034       4      54 ..     902     945 ..     898     946 .. 0.89

  Alignments for each domain:
  == domain 1  score: 8.0 bits;  conditional E-value: 0.0031
     HEAT_EZ  23 qplvpeilpaLlalLnddsd.eVRaaAagaLgnl 55 
                 +++ ++i+++L       +  +VR+aA+ aL++l
  KOO24567.1 547 ADHADAIVKLLR-----HDLsNVRCAALEALEKL 575
                 555666666666.....5556**********987 PP

  == domain 2  score: 10.7 bits;  conditional E-value: 0.00043
     HEAT_EZ  34 lalLnddsdeVRaaAagaLgnl 55 
                 ++lL+d++ +VR aA+ +L+++
  KOO24567.1 588 VPLLRDEEEAVRMAAVQTLRAM 609
                 688889999**********986 PP

  == domain 3  score: 18.7 bits;  conditional E-value: 1.4e-06
     HEAT_EZ   2 rvRraAawaLGrlaggepellqplvpeilpaLlalLnddsd.eVRaaAagaLgnl 55 
                 +vRraA++aLG     e   l+++  +i+p L      d+  +VR+ ++  Lg+l
  KOO24567.1 634 EVRRAAVMALG---LLEQGKLSQYTHAIVPRLD-----DPNaAVRTVCLEVLGKL 680
                 79*********...89999***99999999999.....666599*9888888875 PP

  == domain 4  score: 12.3 bits;  conditional E-value: 0.00013
     HEAT_EZ  21 llqplvpeilpaLlalLnddsd.eVRaaAagaLgn 54 
                  l p+v+ ++  L      d+d +VR aA+ +Lg+
  KOO24567.1 684 GLLPHVSSMMLKLE-----DEDeAVRLAAVATLGQ 713
                 567899********.....999899*********9 PP

  == domain 5  score: 12.0 bits;  conditional E-value: 0.00016
     HEAT_EZ   3 vRraAawaLGrlaggepellqplvpeilpaLlalLnddsd.eVRaaAagaLgn 54 
                 vR+aA++ LG     ep +l++ + ++++  +     d   +VRaaA+ +L  
  KOO24567.1 734 VREAAVLLLG---KLEPKDLADRIGVVVDRIA-----DVEvRVRAAALQTLQS 778
                 9*********...999****************.....*************986 PP

  == domain 6  score: 9.4 bits;  conditional E-value: 0.0011
     HEAT_EZ   2 rvRraAawaLGrlaggepellqplvpeilpaLlalLnddsd.eVRaaAa 49 
                 rvR+aA+ +L    + ep  l ++v+ ++++L      d++ +VR  A+
  KOO24567.1 767 RVRAAALQTL---QSLEPLELVKHVETAVRCLQ-----DPSaRVRIGAV 807
                 89********...5888999*************.....7777***9997 PP

  == domain 7  score: 9.7 bits;  conditional E-value: 0.00087
     HEAT_EZ  22 lqplvpeilpaLlalLnddsd.eVRaaAagaL 52 
                 ++ +vp+++ +L      d+d  VR+ A+ aL
  KOO24567.1 861 IKRYVPQLVHCLR-----DEDaIVRQRAISAL 887
                 4456777777777.....777477****9998 PP

  == domain 8  score: 14.7 bits;  conditional E-value: 2.5e-05
     HEAT_EZ   4 RraAawaLGrlaggepellqplvpeilpaLlalLnddsd.eVRaaAagaLgn 54 
                 R+a +wa G     +p ll ++  +i   L      d+  +VR  A+gaL+ 
  KOO24567.1 902 RAASLWATG---KLGPGLLGLHAAAIATRLD-----DPIlSVRLSAVGALAH 945
                 566666***...*******************.....**************86 PP

>> Cnd1  non-SMC mitotic condensation complex subunit 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.0       3.3   4.5e+03      52      87 ..     542     577 ..     536     586 .. 0.68
   2 ?    0.2   0.1      0.49   6.8e+02      29      45 ..     590     606 ..     563     618 .. 0.81
   3 !   17.9   0.0   1.8e-06    0.0025       2      88 ..     635     717 ..     634     729 .. 0.88
   4 ?    2.2   0.0      0.12   1.6e+02      34      84 ..     731     778 ..     720     780 .. 0.79
   5 !    6.8   0.1    0.0045       6.2       2      49 ..     768     814 ..     767     821 .. 0.90
   6 !   11.3   0.1   0.00019      0.26      19      45 ..     861     887 ..     850     895 .. 0.85
   7 ?   -2.3   0.0       2.9     4e+03      28      42 ..     891     905 ..     888     908 .. 0.82
   8 ?    0.9   0.0       0.3   4.1e+02      26      50 ..     924     948 ..     919     951 .. 0.89

  Alignments for each domain:
  == domain 1  score: -2.5 bits;  conditional E-value: 3.3
        Cnd1  52 dmvkekgflselaklleDenprVvanalaalteise 87 
                 + v+  ++ + + kll+ + ++V+  al al+++ e
  KOO24567.1 542 QPVELADHADAIVKLLRHDLSNVRCAALEALEKLTE 577
                 556666666777777777777777777777776665 PP

  == domain 2  score: 0.2 bits;  conditional E-value: 0.49
        Cnd1  29 rLkDedpyVRktaaivv 45 
                  L+De++ VR+ a+ ++
  KOO24567.1 590 LLRDEEEAVRMAAVQTL 606
                 58999999999998766 PP

  == domain 3  score: 17.9 bits;  conditional E-value: 1.8e-06
        Cnd1   2 iRalairtlgcirvpnlveylvepLrkrLkDedpyVRktaaivvakLilndmvkekgflselaklleDenprVvanalaalteisek 88 
                 +R  a+++lg +   +l +y +  +  rL D+++ VR  ++ v+ kL + ++     ++s +   leDe++ V+  a+a l +++  
  KOO24567.1 635 VRRAAVMALGLLEQGKLSQY-THAIVPRLDDPNAAVRTVCLEVLGKLSQGGLLP---HVSSMMLKLEDEDEAVRLAAVATLGQVAAS 717
                 8999999***9999998776.678999********************9999986...78899999****************998876 PP

  == domain 4  score: 2.2 bits;  conditional E-value: 0.12
        Cnd1  34 dpyVRktaaivvakLilndmvkekgflselaklleDenprVvanalaalte 84 
                  + VR+ a++++ kL  +d+    g    + + + D + rV+a al  l+ 
  KOO24567.1 731 RMGVREAAVLLLGKLEPKDLADRIG---VVVDRIADVEVRVRAAALQTLQS 778
                 567************9999998877...44566778888888888888876 PP

  == domain 5  score: 6.8 bits;  conditional E-value: 0.0045
        Cnd1   2 iRalairtlgcirvpnlveylvepLrkrLkDedpyVRktaaivvakLi 49 
                 +Ra a+ tl ++   +lv  + + + ++L+D+++ VR  a+ v+ kL+
  KOO24567.1 768 VRAAALQTLQSLEPLELVKHVETAV-RCLQDPSARVRIGAVDVMDKLL 814
                 89999*****999999999988887.6*************99999996 PP

  == domain 6  score: 11.3 bits;  conditional E-value: 0.00019
        Cnd1  19 veylvepLrkrLkDedpyVRktaaivv 45 
                 +  +v++L ++L+Ded+ VR+ a+ ++
  KOO24567.1 861 IKRYVPQLVHCLRDEDAIVRQRAISAL 887
                 77899*****************98776 PP

  == domain 7  score: -2.3 bits;  conditional E-value: 2.9
        Cnd1  28 krLkDedpyVRktaa 42 
                 ++++D+d  VR+ a 
  KOO24567.1 891 ACIEDRDDGVRRAAS 905
                 689999999999885 PP

  == domain 8  score: 0.9 bits;  conditional E-value: 0.3
        Cnd1  26 LrkrLkDedpyVRktaaivvakLil 50 
                 + +rL D+   VR  a+ ++a+L +
  KOO24567.1 924 IATRLDDPILSVRLSAVGALAHLAK 948
                 7789******************965 PP

>> ART  NAD:arginine ADP-ribosyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.4   0.0   3.8e-11   5.3e-08      52     201 ..     265     430 ..     227     441 .. 0.73

  Alignments for each domain:
  == domain 1  score: 32.4 bits;  conditional E-value: 3.8e-11
         ART  52 kaklelpegfkdehgiAllaYtssselyrelneavreaGrs........reeylsnfdfkalhfyLtraLqlLrkdsqrcsqvyRgvk....glrfsra 138
                 +  ++ p +f+  +++   +Yt+    + + n  +r   +s        +++  + +++ +   ++ +a  +L+k    + +vyRgv       +f+ a
  KOO24567.1 265 RSLDAQPLEFE--EFLGARLYTGP--CFVKYNTTLRG-LQSsiawfkqtYAKLCRGNKYTTTLHVINSAVIKLSK-LTMATYVYRGVSggrlPKHFRIA 357
                 45555666664..55666778876..55556666652.2321222200045556799******************.9999********43333566755 PP

         ART 139 kkgksvRfg...qFtssslkkkvae.....efgqdtllsiktcl...gvpIkefskfpsedevLIppfevFkvt 201
                 ++   vR g   +F+s+ l++ va       +g ++++s++  +   g++I+ +s++p+e e+L  p++  ++ 
  KOO24567.1 358 NEY-GVRGGidpAFMSTTLDRAVALtyaasSNGPGVVFSMRQGMvdrGADIGWLSQYPHEMEILFAPLTGLEIH 430
                 555.899776668*********9987888899*********9866669*******************9876665 PP

>> Adaptin_N  Adaptin N terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.8   0.9   1.8e-07   0.00025      84     333 ..     553     815 ..     543     823 .. 0.73
   2 ?    3.8   0.0     0.012        17     119     182 ..     868     949 ..     850     957 .] 0.54

  Alignments for each domain:
  == domain 1  score: 19.8 bits;  conditional E-value: 1.8e-07
                 HHHHCCSSSHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHT-SSHHHHHHHHHHHHHCCCCCHHCCCCCHHHHHHHCTT-SSHHHHHHHHHHHHHHHCC CS
   Adaptin_N  84 lqkDlkdpnqlirglALrvLssirvpelaedlapaikkllkdrspyvrkkAalailklykkdpdllrkqlveeikellsdkdpgvvlaAvalleeikkn 182
                 + k l +  +++r+ AL +L ++++++l++  a  +  ll+d++  vr +A++++ ++ +++   l ++ ++ + e     +  v +aAv++l  +   
  KOO24567.1 553 IVKLLRHDLSNVRCAALEALEKLTEAQLSPHGAS-VVPLLRDEEEAVRMAAVQTLRAMDSSTLASLAPT-MQLTLEQAPPWKSEVRRAAVMALGLL--- 646
                 556677777889****************999775.66799*************9999988887776554.44444444445579************... PP

                 CCC.CCHHHHHHHCCHHHHHHCS-HHHHHHHHHHHCC---SSHHHH..HHHHHHHCGGCGCSSCHHHHHHHHHCCHCCCCST................. CS
   Adaptin_N 183 drl.llkllpklvrrLcnllteldpwlqvkiiklltrlarqepeerskkellesllnllqssnnaVlletvnlivelapkne................. 263
                 ++  l++  + +v rL+    +++    ++ +++l +l++           + s + +l+   +aV l++v ++ ++a +                   
  KOO24567.1 647 EQGkLSQYTHAIVPRLD----DPNAAVRTVCLEVLGKLSQGGLLPH-----VSSMMLKLEDEDEAVRLAAVATLGQVAASIGkgpiiarathprmgvre 736
                 44302366666666655....9999*************99777766.....567777777777777777777777444444433344444444444444 PP

                 .............HHHCCHHCHHHHHHSSCCTCHHHHHCHHHHHHHHXXTTTTTTTCCCCSXXTTSXHHHHHHHHHHHCCCXX CS
   Adaptin_N 264 .............livlavnaLvrllsskdenlryvaLrtllkivkkepkavqhldlkifllktdddvsirlkaldlllklvd 333
                              l+ ++  +  r  + +   +r +aL+tl+++   e   v+h ++ +++l+ d++  +r+ a+d++ kl++
  KOO24567.1 737 aavlllgklepkdLADRIGVVVDRIADVEVR-VRAAALQTLQSLEPLE--LVKHVETAVRCLQ-DPSARVRIGAVDVMDKLLS 815
                 4444444444442345555555555555555.*************999..999**********.*************988876 PP

  == domain 2  score: 3.8 bits;  conditional E-value: 0.012
                 HHHHHT-SSHHHHHHHHHHHHHCCCC...................CHHCCCCCHHHHHHHCTT-SSHHHHHHHHHHHHHHHCC CS
   Adaptin_N 119 ikkllkdrspyvrkkAalailklykk...................dpdllrkqlveeikellsdkdpgvvlaAvalleeikkn 182
                 +  +l+d+++ vr+ A+ a+l +  +                    p ll    +  i   l+d   +v l+Av +l ++ k+
  KOO24567.1 868 LVHCLRDEDAIVRQRAISALLIVACIedrddgvrraaslwatgklGPGLLGLH-AAAIATRLDDPILSVRLSAVGALAHLAKP 949
                 33455566667777776555444333334444444444444333366665443.66666666666667777777777777444 PP

>> ADPrib_exo_Tox  ADP-ribosyltransferase exoenzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.8   0.0   1.4e-07   0.00019      57     173 ..     321     433 ..     275     438 .. 0.76

  Alignments for each domain:
  == domain 1  score: 20.8 bits;  conditional E-value: 1.4e-07
                     HHHHHHHHCCT-.B-SS-EEEEEEE-GGGG-HHHHTT-HHHHHHHHHHHTT-EEEESS-EEEESSSS.....SCCCTTTSEEEEEEE-TTSBEEE CS
  ADPrib_exo_Tox  57 kiknldsaleks.ripeniivYRrvdeaelgleldskneekvsefeakvkgkvfkergyvSTslvkd....taasfggreilleltvpkgsegay 146
                     + + ++sa+ k  +++   +vYR+v+   l         + +++ +  +  +   + +++ST+l +      aas +g  + ++++    + ga+
      KOO24567.1 321 TLHVINSAVIKLsKLTMATYVYRGVSGGRL--------PKHFRIAN-EYGVRGGIDPAFMSTTLDRAvaltYAASSNGPGVVFSMRQGMVDRGAD 406
                     46778899888889***********88888........56666655.67788999************66644444444489999999999***** PP

                     -CCCSSSGCG-EEEE-TTEEEEEEEEE CS
  ADPrib_exo_Tox 147 isplslypgeaEvLlprgltykinkit 173
                     i  ls+yp e+E+L+   + ++i++i+
      KOO24567.1 407 IGWLSQYPHEMEILFAPLTGLEIHSIS 433
                     **************9988888888876 PP

>> Vac14_Fab1_bd  Vacuolar 14 Fab1-binding region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.4   0.0      0.73     1e+03      24      51 ..     579     606 ..     553     622 .. 0.79
   2 ?    0.2   0.0      0.84   1.2e+03      25      65 ..     651     688 ..     637     709 .. 0.54
   3 ?    0.4   0.0      0.75     1e+03      29      55 ..     689     715 ..     672     724 .. 0.83
   4 ?   -1.1   0.0       2.2   3.1e+03      27      50 ..     752     775 ..     734     792 .. 0.75
   5 ?    3.2   0.0       0.1   1.4e+02      28      51 ..     787     810 ..     767     821 .. 0.81
   6 !    7.0   0.1    0.0062       8.5      21      55 ..     857     891 ..     842     898 .. 0.82

  Alignments for each domain:
  == domain 1  score: 0.4 bits;  conditional E-value: 0.73
  Vac14_Fab1_bd  24 yleeivkpvlkcfsDkdsrvRyyacEsl 51 
                     l+   ++v+  ++D+++ vR  a+ +l
     KOO24567.1 579 QLSPHGASVVPLLRDEEEAVRMAAVQTL 606
                    5555556799999999999999988766 PP

  == domain 2  score: 0.2 bits;  conditional E-value: 0.84
  Vac14_Fab1_bd  25 leeivkpvlkcfsDkdsrvRyyacEslyniakvakgevlkl 65 
                    l++  + ++  ++D ++ vR    E l    k ++g +l +
     KOO24567.1 651 LSQYTHAIVPRLDDPNAAVRTVCLEVL---GKLSQGGLLPH 688
                    455556666677777777777766665...33344444444 PP

  == domain 3  score: 0.4 bits;  conditional E-value: 0.75
  Vac14_Fab1_bd  29 vkpvlkcfsDkdsrvRyyacEslynia 55 
                    v++++  ++D+d+ vR  a+ +l  +a
     KOO24567.1 689 VSSMMLKLEDEDEAVRLAAVATLGQVA 715
                    567888999*******99988876665 PP

  == domain 4  score: -1.1 bits;  conditional E-value: 2.2
  Vac14_Fab1_bd  27 eivkpvlkcfsDkdsrvRyyacEs 50 
                    + + +v++ + D + rvR  a  +
     KOO24567.1 752 DRIGVVVDRIADVEVRVRAAALQT 775
                    556778888888888888766655 PP

  == domain 5  score: 3.2 bits;  conditional E-value: 0.1
  Vac14_Fab1_bd  28 ivkpvlkcfsDkdsrvRyyacEsl 51 
                     v++ ++c++D ++rvR  a++ +
     KOO24567.1 787 HVETAVRCLQDPSARVRIGAVDVM 810
                    5778899**********9888766 PP

  == domain 6  score: 7.0 bits;  conditional E-value: 0.0062
  Vac14_Fab1_bd  21 ikeyleeivkpvlkcfsDkdsrvRyyacEslynia 55 
                    + + +++ v+ +++c++D+d+ vR  a+ +l  +a
     KOO24567.1 857 MLPSIKRYVPQLVHCLRDEDAIVRQRAISALLIVA 891
                    556778899*******************9998776 PP

>> Dimer_Tnp_hAT  hAT family C-terminal dimerisation region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0   5.6e-05     0.077      37      75 ..     495     534 ..     493     540 .. 0.91

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 5.6e-05
                    HHHHHHHHTS-S-TTTTHHHHHHT.HHHHH-TTT---HHH CS
  Dimer_Tnp_hAT  37 sklardvLsipvssaasErsFstl.gkvllesrnslepln 75 
                    + la+d L++pv+ ++ E  F+ +  +v++ +r  l+++ 
     KOO24567.1 495 YHLAKDALAQPVMWYNDEENFQLGvARVIDAKRAALDHQK 534
                    789******************************9999986 PP

>> Arm  Armadillo/beta-catenin-like repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.1       5.9   8.1e+03      16      24 ..     107     116 ..     107     126 .. 0.63
   2 ?    4.0   0.1      0.04        56      16      39 ..     552     575 ..     543     577 .. 0.91
   3 ?   -0.4   0.0      0.96   1.3e+03      18      37 ..     588     607 ..     587     607 .. 0.91
   4 ?   -3.3   0.0       8.2   1.1e+04      21      40 ..     662     681 ..     659     681 .. 0.83
   5 ?    2.5   0.0      0.12   1.6e+02      20      39 ..     692     714 ..     684     716 .. 0.75
   6 ?   -0.4   0.0      0.97   1.3e+03      14      33 ..     788     807 ..     782     810 .. 0.78
   7 ?    7.2   0.1    0.0041       5.6      14      36 ..     865     887 ..     860     888 .. 0.93
   8 ?   -2.4   0.0       4.3   5.9e+03      18      32 ..     890     904 ..     888     905 .. 0.89
   9 ?   -0.1   0.0      0.77   1.1e+03      26      40 ..     933     947 ..     927     948 .. 0.81

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 5.9
                 HHHHHTT.TS CS
         Arm  16 pLvrLLs.se 24 
                 +LvrLL+   
  KOO24567.1 107 ALVRLLEtGH 116
                 6999998443 PP

  == domain 2  score: 4.0 bits;  conditional E-value: 0.04
                 HHHHHTTTSSHHHHHHHHHHHHHH CS
         Arm  16 pLvrLLssedeevqeeAawALsNL 39 
                 + v+LL+++  +v+++A+ AL  L
  KOO24567.1 552 AIVKLLRHDLSNVRCAALEALEKL 575
                 789*****************9776 PP

  == domain 3  score: -0.4 bits;  conditional E-value: 0.96
                 HHHTTTSSHHHHHHHHHHHH CS
         Arm  18 vrLLssedeevqeeAawALs 37 
                 v LL++e e v+ +A+ +L+
  KOO24567.1 588 VPLLRDEEEAVRMAAVQTLR 607
                 789************99996 PP

  == domain 4  score: -3.3 bits;  conditional E-value: 8.2
                 TTTSSHHHHHHHHHHHHHHT CS
         Arm  21 LssedeevqeeAawALsNLa 40 
                 L++++  v+++++  L+ L+
  KOO24567.1 662 LDDPNAAVRTVCLEVLGKLS 681
                 77899999999999998775 PP

  == domain 5  score: 2.5 bits;  conditional E-value: 0.12
                 HTT...TSSHHHHHHHHHHHHHH CS
         Arm  20 LLs...sedeevqeeAawALsNL 39 
                 ++    +ede v+ +A+++L+  
  KOO24567.1 692 MMLkleDEDEAVRLAAVATLGQV 714
                 5555779*************965 PP

  == domain 6  score: -0.4 bits;  conditional E-value: 0.97
                 HHHHHHHTTTSSHHHHHHHH CS
         Arm  14 vppLvrLLssedeevqeeAa 33 
                 v+  vr+L++++ +v+  A+
  KOO24567.1 788 VETAVRCLQDPSARVRIGAV 807
                 667799******99997776 PP

  == domain 7  score: 7.2 bits;  conditional E-value: 0.0041
                 HHHHHHHTTTSSHHHHHHHHHHH CS
         Arm  14 vppLvrLLssedeevqeeAawAL 36 
                 vp+Lv++L++ed  v++ A +AL
  KOO24567.1 865 VPQLVHCLRDEDAIVRQRAISAL 887
                 9******************9998 PP

  == domain 8  score: -2.4 bits;  conditional E-value: 4.3
                 HHHTTTSSHHHHHHH CS
         Arm  18 vrLLssedeevqeeA 32 
                 v+++++ d++v+++A
  KOO24567.1 890 VACIEDRDDGVRRAA 904
                 89999*******998 PP

  == domain 9  score: -0.1 bits;  conditional E-value: 0.77
                 HHHHHHHHHHHHHHT CS
         Arm  26 eevqeeAawALsNLa 40 
                  +v+  A++AL++La
  KOO24567.1 933 LSVRLSAVGALAHLA 947
                 678889*******98 PP

>> CLASP_N  CLASP N terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.0       2.5   3.5e+03      84     199 ..     576     605 ..     553     619 .. 0.55
   2 ?    0.4   0.0      0.28   3.9e+02     172     196 ..     649     673 ..     642     698 .. 0.84
   3 ?   -1.3   0.0      0.95   1.3e+03     172     199 ..     684     710 ..     657     717 .. 0.71
   4 ?   -1.2   0.0      0.88   1.2e+03     172     195 ..     783     805 ..     767     812 .. 0.75
   5 ?    6.8   0.1    0.0032       4.4     154     196 ..     839     883 ..     829     891 .. 0.71
   6 ?   -0.7   0.1      0.65   8.9e+02     180     196 ..     888     904 ..     883     906 .. 0.89

  Alignments for each domain:
  == domain 1  score: -2.7 bits;  conditional E-value: 2.5
     CLASP_N  84 lkeqldpmveillptLlkllgdtKkiisqnanqalaallsnasfsprilqvlsvalqdKnvqpReysaiwLkilltrfeshkskleasllldliekslk 182
                  + ql p   +                                                                                      ++
  KOO24567.1 576 TEAQLSPHGAS--------------------------------------------------------------------------------------VV 588
                 44444444444......................................................................................44 PP

     CLASP_N 183 kgleDanptVRetaRst 199
                  +l D + +VR +a +t
  KOO24567.1 589 PLLRDEEEAVRMAAVQT 605
                 44555555555544444 PP

  == domain 2  score: 0.4 bits;  conditional E-value: 0.28
     CLASP_N 172 llldliekslkkgleDanptVReta 196
                 + l+++  +++  l D+n +VR + 
  KOO24567.1 649 GKLSQYTHAIVPRLDDPNAAVRTVC 673
                 44679999**************875 PP

  == domain 3  score: -1.3 bits;  conditional E-value: 0.95
     CLASP_N 172 llldliekslkkgleDanptVRetaRst 199
                 + l  ++ s++  leD + +VR +a +t
  KOO24567.1 684 G-LLPHVSSMMLKLEDEDEAVRLAAVAT 710
                 3.33567777778888888888777666 PP

  == domain 4  score: -1.2 bits;  conditional E-value: 0.88
     CLASP_N 172 llldliekslkkgleDanptVRet 195
                 +l+  ++++ +++l+D++  VR  
  KOO24567.1 783 ELV-KHVETAVRCLQDPSARVRIG 805
                 555.44556679*********965 PP

  == domain 5  score: 6.8 bits;  conditional E-value: 0.0032
     CLASP_N 154 Lkilltrfeshkskleaslll...dliekslkkgleDanptVReta 196
                 ++ ++ + +  +++le +++l   + ++++l+ +l D +  VR+ a
  KOO24567.1 839 MREATLETT-LEATLETTHMLpsiKRYVPQLVHCLRDEDAIVRQRA 883
                 555555555.667777777666668999999999999999999987 PP

  == domain 6  score: -0.7 bits;  conditional E-value: 0.65
     CLASP_N 180 slkkgleDanptVReta 196
                 ++++++eD + +VR++a
  KOO24567.1 888 LIVACIEDRDDGVRRAA 904
                 5899**********987 PP

>> HEAT_PBS  PBS lyase HEAT-like repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.1       9.4   1.3e+04       7      22 ..      97     112 ..      97     113 .. 0.65
   2 ?    4.7   0.3     0.045        62       1      15 [.     564     585 ..     564     608 .. 0.74
   3 ?   -0.9   0.0       2.8   3.9e+03       1      12 [.     598     609 ..     598     619 .. 0.84
   4 ?    7.4   0.0    0.0061       8.4       1      15 [.     635     656 ..     635     681 .. 0.79
   5 ?    2.5   0.1      0.22   3.1e+02       1      14 [.     703     716 ..     703     730 .. 0.85
   6 ?    2.0   0.2      0.33   4.5e+02       1      15 [.     734     754 ..     734     779 .. 0.64
   7 ?    0.3   0.0       1.2   1.6e+03      15      27 .]     862     874 ..     836     874 .. 0.79
   8 ?   -0.0   0.0       1.5     2e+03       1      13 [.     935     947 ..     935     952 .. 0.88

  Alignments for each domain:
  == domain 1  score: -2.5 bits;  conditional E-value: 9.4
                 HHHHHCTSGGGHHHHH CS
    HEAT_PBS   7 kaLgqlgdeeaipaLl 22 
                 +aLg  g+ +a+ +Ll
  KOO24567.1  97 RALGSKGSRAALVRLL 112
                 5777777777776665 PP

  == domain 2  score: 4.7 bits;  conditional E-value: 0.045
                 HHHHHHHHHHHCTS.......G CS
    HEAT_PBS   1 vRraAakaLgqlgd.......e 15 
                 vR+aA++aL +l+         
  KOO24567.1 564 VRCAALEALEKLTEaqlsphgA 585
                 9**********99866666653 PP

  == domain 3  score: -0.9 bits;  conditional E-value: 2.8
                 HHHHHHHHHHHC CS
    HEAT_PBS   1 vRraAakaLgql 12 
                 vR aA+  L ++
  KOO24567.1 598 VRMAAVQTLRAM 609
                 899999999987 PP

  == domain 4  score: 7.4 bits;  conditional E-value: 0.0061
                 HHHHHHHHHHHCTS.......G CS
    HEAT_PBS   1 vRraAakaLgqlgd.......e 15 
                 vRraA+ aLg l          
  KOO24567.1 635 VRRAAVMALGLLEQgklsqytH 656
                 9*********998777744443 PP

  == domain 5  score: 2.5 bits;  conditional E-value: 0.22
                 HHHHHHHHHHHCTS CS
    HEAT_PBS   1 vRraAakaLgqlgd 14 
                 vR aA+  Lgq+ +
  KOO24567.1 703 VRLAAVATLGQVAA 716
                 8**********876 PP

  == domain 6  score: 2.0 bits;  conditional E-value: 0.33
                 HHHHHHHHHHHCTS......G CS
    HEAT_PBS   1 vRraAakaLgqlgd......e 15 
                 vR aA+  Lg+l         
  KOO24567.1 734 VREAAVLLLGKLEPkdladrI 754
                 8999*9999999875555550 PP

  == domain 7  score: 0.3 bits;  conditional E-value: 1.2
                 GGGHHHHHHHCTC CS
    HEAT_PBS  15 eeaipaLleaLqd 27 
                 ++++p+L+ +L d
  KOO24567.1 862 KRYVPQLVHCLRD 874
                 89*********87 PP

  == domain 8  score: -0.0 bits;  conditional E-value: 1.5
                 HHHHHHHHHHHCT CS
    HEAT_PBS   1 vRraAakaLgqlg 13 
                 vR +A+ aL+ l 
  KOO24567.1 935 VRLSAVGALAHLA 947
                 8********9886 PP

>> DUF4042  Domain of unknown function (DUF4042)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.1      0.72   9.9e+02      48      67 ..     590     609 ..     582     618 .. 0.86
   2 ?    0.1   0.0       0.4   5.5e+02      49      68 ..     662     681 ..     647     686 .. 0.83
   3 ?    1.0   0.1      0.22     3e+02      50      67 ..     762     779 ..     756     783 .. 0.85
   4 ?    6.3   0.0    0.0051         7      48      69 ..     794     815 ..     785     823 .. 0.86
   5 ?   -4.0   0.0       7.3     1e+04      46      63 ..     870     886 ..     860     894 .. 0.50
   6 ?   -0.6   0.0      0.65   8.9e+02      47      67 ..     926     946 ..     920     950 .. 0.85

  Alignments for each domain:
  == domain 1  score: -0.7 bits;  conditional E-value: 0.72
     DUF4042  48 llkDpspkvRaaalqvlaal 67 
                 ll+D +  vR+aa+q+l a+
  KOO24567.1 590 LLRDEEEAVRMAAVQTLRAM 609
                 68999999******999877 PP

  == domain 2  score: 0.1 bits;  conditional E-value: 0.4
     DUF4042  49 lkDpspkvRaaalqvlaalL 68 
                 l Dp+  vR++ l+vl +l 
  KOO24567.1 662 LDDPNAAVRTVCLEVLGKLS 681
                 78*************99885 PP

  == domain 3  score: 1.0 bits;  conditional E-value: 0.22
     DUF4042  50 kDpspkvRaaalqvlaal 67 
                  D +++vRaaalq+l +l
  KOO24567.1 762 ADVEVRVRAAALQTLQSL 779
                 688999999999998765 PP

  == domain 4  score: 6.3 bits;  conditional E-value: 0.0051
     DUF4042  48 llkDpspkvRaaalqvlaalLd 69 
                  l+Dps +vR+ a+ v+ +lL+
  KOO24567.1 794 CLQDPSARVRIGAVDVMDKLLS 815
                 579**************99997 PP

  == domain 5  score: -4.0 bits;  conditional E-value: 7.3
     DUF4042  46 tillkDpspkvRaaalqv 63 
                 ++ l+D    vR+ a+++
  KOO24567.1 870 HC-LRDEDAIVRQRAISA 886
                 33.334444444444433 PP

  == domain 6  score: -0.6 bits;  conditional E-value: 0.65
     DUF4042  47 illkDpspkvRaaalqvlaal 67 
                 + l Dp + vR+ a+ +la+l
  KOO24567.1 926 TRLDDPILSVRLSAVGALAHL 946
                 5688************99987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (957 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       422  (0.0235373); expected 358.6 (0.02)
Passed bias filter:                      351  (0.0195772); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                        14  (0.000780858); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 0.76u 0.29s 00:00:01.05 Elapsed: 00:00:00.43
# Mc/sec: 6629.42
//
Query:       KOO24568.1  [L=303]
Description: hypothetical protein Ctob_006428 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (303 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       254  (0.014167); expected 358.6 (0.02)
Passed bias filter:                      232  (0.0129399); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.44u 0.24s 00:00:00.68 Elapsed: 00:00:00.42
# Mc/sec: 2190.17
//
Query:       KOO24569.1  [L=182]
Description: hypothetical protein Ctob_006429 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
  ------ inclusion threshold ------
      0.089   13.0   4.2       0.17   12.0   4.2    1.4  1  Metal_resist  Heavy-metal resistance
        2.3    6.4   9.1        2.4    6.4   9.1    1.1  1  Smg8_Smg9     Smg8_Smg9
        3.1    6.3  33.5        3.6    6.1  33.5    1.1  1  TFIIF_alpha   Transcription initiation factor IIF, alpha subu
        3.2    5.9  21.6        3.8    5.7  21.6    1.2  1  CDC45         CDC45-like protein
        4.5    5.9  14.9        5.4    5.7  14.9    1.2  1  Presenilin    Presenilin


Domain annotation for each model (and alignments):
>> Metal_resist  Heavy-metal resistance
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   4.2   4.9e-05      0.17      22      73 ..      48     102 ..      42     105 .. 0.77

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 4.9e-05
                   XXXXXTTHHBH....HHHHHHHS-TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
  Metal_resist  22 ggpppggparg...raellraalgLpaeqraelraalrdharelralrrelraar 73 
                   ++p +    ++   r+el+ a + L +e+++++ra l+++++++  ++  + +++
    KOO24569.1  48 SRPSWEEFKEQqrkRGELEGAEDRLEEEAQRRFRAELDEARNARLGAAEKSSDKK 102
                   444444444444559**************************99988888777765 PP

>> Smg8_Smg9  Smg8_Smg9
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.4   9.1   0.00067       2.4     535     610 ..      80     153 ..      30     171 .. 0.67

  Alignments for each domain:
  == domain 1  score: 6.4 bits;  conditional E-value: 0.00067
                 XXXXXXXXXXXXXXXX........XXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXXX...XXXXXXXXXXXXX CS
   Smg8_Smg9 535 Fqpstsdyraaeeeaafpleeaeeskeaekkkekeeselsegessdlslaeslgeseesseeveedseessesdse 610
                 F  + ++ r a+  aa ++   ++++++++kk+k ++++s+ e+sd+s ++s+ge +++++++++++++ +es + 
  KOO24569.1  80 FRAELDEARNARLGAAEKS--SDKKHKHKHKKDKDKKKHSKRERSDVSDSDSEGEARKKKKKKHRSEKKDKESREG 153
                 5556666666666666333..3334444444455555557777888887777777775555554444443333333 PP

>> TFIIF_alpha  Transcription initiation factor IIF, alpha subunit (TFIIF-alpha)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.1  33.5     0.001       3.6     245     410 ..      12     166 ..       2     180 .. 0.54

  Alignments for each domain:
  == domain 1  score: 6.1 bits;  conditional E-value: 0.001
                  XXXXXXXXX.....XXXXXXXXX.XXXX.XX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
  TFIIF_alpha 245 kkkaknkkk.ldddkkkkrgsdd.dadeyds.ddGddegrEldyisDdsasendpeeredkkseEeeekkeieqdedeeekeeekkeeegklskkkkk 339
                  ++ a+++   ++d+++k+  s++ ++++ +s   G      + + + + + + + e  ed ++eE + +   e de  +++        g  +k+  k
   KOO24569.1  12 SQIARGGGGaDADEEQKPFHSKEyEQAQLESlLAGSSRPSWEEFKEQQRKRG-ELEGAEDRLEEEAQRRFRAELDEARNARL-------GAAEKSSDK 101
                  4445555444566666666655544444444145666666666666666666.77777777777766666655544444443.......333333333 PP

                  XXXXXXXXXXX..XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXXXXXX CS
  TFIIF_alpha 340 akklkkkkkekdkkdSddeedsddsDideedsvslvkakKkkekkkeekvdsnessagnsrparpspeqkd 410
                  ++k+k+kk + +kk S + e sd sD+d+e      k+kKkk+  + ek  + es +g  + + +s  +++
   KOO24569.1 102 KHKHKHKKDKDKKKHS-KRERSDVSDSDSEGEAR--KKKKKKH--RSEKK-DKESREGREGHGHGSKADGP 166
                  3333444444444555.66778889988876633..4444444..33333.45666666666666666655 PP

>> CDC45  CDC45-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.7  21.6     0.001       3.8     124     205 ..      53     152 ..      15     179 .. 0.41

  Alignments for each domain:
  == domain 1  score: 5.7 bits;  conditional E-value: 0.001
       CDC45 124 ealeeeeesd..........eede......eeeeeddddeeeeeeeeedeedeeedeeeskkkrksksdeeeesddddersrkrrrse........... 195
                 e+ +e++ ++          ee+       e +e  + + ++ e++++++++++++                 +d+d+++++kr+rs+           
  KOO24569.1  53 EEFKEQQRKRgelegaedrlEEEAqrrfraELDEARNARLGAAEKSSDKKHKHKHK-----------------KDKDKKKHSKRERSDvsdsdsegear 134
                 44444444331111110000111122232211111111111222222222222222.................33333333333333322221111100 PP

       CDC45 196 ........psakklrrql 205
                         +++k +++++
  KOO24569.1 135 kkkkkkhrSEKKDKESRE 152
                 000000002222222222 PP

>> Presenilin  Presenilin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.7  14.9    0.0015       5.4     242     306 ..      73     148 ..      11     169 .. 0.39

  Alignments for each domain:
  == domain 1  score: 5.7 bits;  conditional E-value: 0.0015
  Presenilin 242 ekkkeeasesskeeeseeesseksaqsse...........seeeseeesseaessaeesseekeseessesseeee 306
                 e+++++  +++ +e+++ +   ++++s++           ++++s++e+s++++s++e +++k+++++++s+++++
  KOO24569.1  73 EEEAQRRFRAELDEARNARLGAAEKSSDKkhkhkhkkdkdKKKHSKRERSDVSDSDSEGEARKKKKKKHRSEKKDK 148
                 1111112222222222221111111111110010011111222222222222222222222222111111111111 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (182 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2404  (0.134084); expected 358.6 (0.02)
Passed bias filter:                      678  (0.0378158); expected 358.6 (0.02)
Passed Vit filter:                       195  (0.0108762); expected 17.9 (0.001)
Passed Fwd filter:                        53  (0.0029561); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.75u 0.32s 00:00:01.07 Elapsed: 00:00:00.48
# Mc/sec: 1140.39
//
Query:       KOO24570.1  [L=106]
Description: hypothetical protein Ctob_006423 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (106 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       315  (0.0175693); expected 358.6 (0.02)
Passed bias filter:                      261  (0.0145574); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.39u 0.23s 00:00:00.62 Elapsed: 00:00:00.41
# Mc/sec: 776.48
//
Query:       KOO24571.1  [L=271]
Description: dehydrodolichyl diphosphate synthase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
      5e-41  140.7   0.0    7.9e-41  140.0   0.0    1.3  1  Prenyltransf  Putative undecaprenyl diphosphate synthase
    9.1e-30  102.8   3.5    1.4e-29  102.3   2.6    1.8  2  Dynein_light  Dynein light chain type 1


Domain annotation for each model (and alignments):
>> Prenyltransf  Putative undecaprenyl diphosphate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  140.0   0.0   8.8e-45   7.9e-41      17     172 ..       3     161 ..       1     173 [. 0.85

  Alignments for each domain:
  == domain 1  score: 140.0 bits;  conditional E-value: 8.8e-45
                   HHHHHHHHHHHHHHHHHHHHHTT-SEEEEEEEEGGGGGS-HHHHHHHHHHHH...HHHHHHHHHHHHHT.TEEEEEESSGGGS-HHHHHHHHHHHHH CS
  Prenyltransf  17 reeGhkaGaealkeilelclelgvkvvtvYafSteNfkRskeevdalmellk...eellkeelkellke.gvrvrviGdlellpedvlealekaeea 109
                   +++Ghk+G+++l+++l++c elgv+ vtvYafS+eNfkRs++evdalm l++   +e+  +e+ +l+++ gvrvrv+Gdl+++++++  ++++++++
    KOO24571.1   3 VARGHKMGYDKLEQVLRWCCELGVHGVTVYAFSIENFKRSQSEVDALMALAEeglREMS-DET-HLVQRrGVRVRVVGDLSRVSASLYGEMQRVMRM 97 
                   567************************************************86644344.443.555555*************************** PP

                   HT.TTTSEEEEEEEEE-HHHHHHHHHHHHHHTT..SSSG.GGHSHHHHHCTSTT..T.SSS-SEE CS
  Prenyltransf 110 tkknnkklvlniavnYgsrdeiveavrelvkekseekkk.eeideetlekhlytaka.lpdpDll 172
                   t+ n ++ +l+++++Y+sr+ei++++r+l k+ ++ +   ++i+++ le+ l t++  lp++Dl+
    KOO24571.1  98 TQGN-TRHTLTVCFSYTSRNEIAASIRRLGKACADGRLLpSDINAALLERCLLTTAPgLPPVDLI 161
                   **55.55**********************6666443332378899******9997779******8 PP

>> Dynein_light  Dynein light chain type 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.0      0.62   5.5e+03      23      41 ..     107     123 ..      90     125 .. 0.51
   2 !  102.3   2.6   1.5e-33   1.4e-29       2      86 .]     188     270 ..     187     270 .. 0.97

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 0.62
                   HHHHH-SSHH..HHHHHHH CS
  Dynein_light  23 ealekfkkekekdiaayik 41 
                   + + +++++  ++iaa+i+
    KOO24571.1 107 TVCFSYTSR--NEIAASIR 123
                   333233333..48888886 PP

  == domain 2  score: 102.3 bits;  conditional E-value: 1.5e-33
                   -EEEEEEE-HHHHHHHHHHHHHHHHH-SSHH..HHHHHHHHHHHHHH-S-EEEEEEEEEEEEEEEETTEEEEEEETTEEEEEEE- CS
  Dynein_light   2 avikeadmseemqeeaielakealekfkkekekdiaayikkeldkkygptWhciVgksfgssvthekghfiyfyigklaillfKt 86 
                   a++k  dm+e+m++ aiela+ a+++f+ke   ++aa+ikke+dk y ptWh++Vg++fgs+v h++++f+yf+ig +++l++K+
    KOO24571.1 188 ANVKTVDMTEDMEKVAIELASFAMNEFTKEV--EMAAHIKKEFDKMYSPTWHVVVGTNFGSHVVHQTKNFVYFNIGAINFLVYKS 270
                   689***********************88888..***************************************************7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (271 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       547  (0.0305092); expected 358.6 (0.02)
Passed bias filter:                      427  (0.0238162); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.44u 0.24s 00:00:00.68 Elapsed: 00:00:00.39
# Mc/sec: 2058.36
//
Query:       KOO24572.1  [L=686]
Description: non-lysosomal glucosylceramidase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.026   14.1   0.9      0.041   13.4   0.9    1.3  1  DUF4225   Protein of unknown function (DUF4225)


Domain annotation for each model (and alignments):
>> DUF4225  Protein of unknown function (DUF4225)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.9   2.3e-06     0.041      80     160 ..      49     131 ..      25     134 .. 0.77

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 2.3e-06
     DUF4225  80 GannvvenisyllgreektGlvrdvYre..aaeklGyskkdgdllYaavDlslSlyglfklvlk.pdawrL.fryvnsDllrklk 160
                 G+n  +e+   +l r+   G  r +Yr+  a +klGys+++g+  Y   +l  S+  ++ +v k  da r+ ++y+  D  + +k
  KOO24572.1  49 GVNHAMESWGDVLLRK--YGKERYAYRRdlAMQKLGYSTDNGAYYYYNTELGQSYETTLLNVKKyADAGRIpYKYILLDSWWYFK 131
                 6666666666655443..3444555654337899*********************988776665269999889999999877665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (686 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       265  (0.0147805); expected 358.6 (0.02)
Passed bias filter:                      233  (0.0129957); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.55u 0.26s 00:00:00.81 Elapsed: 00:00:00.43
# Mc/sec: 4753.37
//
Query:       KOO24573.1  [L=783]
Description: cyclic nucleotide-binding protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.5e-23   83.3   7.2    3.4e-22   78.9   7.2    2.1  1  Ion_trans      Ion transport protein
    5.4e-11   42.3   3.3    1.8e-10   40.6   3.3    1.8  1  Ion_trans_2    Ion channel
    2.2e-09   37.3   0.1    2.4e-07   30.7   0.1    3.4  1  cNMP_binding   Cyclic nucleotide-binding domain
  ------ inclusion threshold ------
      0.036   14.2   1.9       0.19   11.9   0.1    2.7  3  Acyl-CoA_dh_C  Acetyl-CoA dehydrogenase C-terminal like
      0.065   12.8   0.1       0.15   11.6   0.1    1.5  1  Tsc35          Testis-specific protein 35
        4.3    7.8   4.7        2.6    8.5   1.2    2.4  2  WRW            Mitochondrial F1F0-ATP synthase, subunit f


Domain annotation for each model (and alignments):
>> Ion_trans  Ion transport protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   78.9   7.2   1.2e-25   3.4e-22       4     233 ..      94     374 ..      91     381 .. 0.80

  Alignments for each domain:
  == domain 1  score: 78.9 bits;  conditional E-value: 1.2e-25
                 HHHHHHHHHHHHHHHHHCCCSSSSHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHTH................HHHHHHCHSHHHHHHHHHHHHHHHHH. CS
   Ion_trans   4 felfilllillncvflaletyfpedelektileilelvftaiftlemllkilalgl................likkrYlrdpwnilDflvvlpsllsl. 85 
                 +++++++l+++++++ ++++ f+  + + +++ i++ v++++f++++ll ++++ +                li+++Ylr  w+i+D+ + lp+   l 
  KOO24573.1  94 WDILSIVLLVWTVIVSPIKFGFDVADRCASPMWIMDAVVDIFFMVDLLLTFVTATYitnpktseevltrnprLIARKYLRG-WFIIDLASSLPIHTALt 191
                 99****************99999977777************************77779***********************.9************9886 PP

                 ......HHHH......HHHHHHHHHHHHGGGGGGHHH....................CHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH.HHH CS
   Ion_trans  86 ......vlse......esllllsvlrlfrvlrllkli....................srleglrtlvtalirsvkdllnvlllllvvlfifalig.vql 151
                       +         ++ +l++++r++rv++llkl+                     +++ l+  +  ++++++ ll +l+l++++++ f+ +g  ++
  KOO24573.1 192 layfgcD--AnlvegtGAPSLVKLVRILRVVKLLKLVrilklgqllddmtdslavsiDMSDQLKLQLPLILKAFQILLTMLYLTHIMACGFYYVGaREY 288
                 6666551..145566655566666666666666666655555577788888888888888888889999**************************5566 PP

                 HTTSCCCCCCSCCSTSSSTTTSSSSSS....................HHHHHHHHHHHHTTSSHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHH CS
   Ion_trans 152 fkgklreknecaktwenpnngntnFdn....................fftallwlfrlmttegwgdilyatldekskvaliyfvifiilgsflllNlli 230
                 f+++       +++w           +                    ++ +l+w+ ++ tt+g+gdi ++t++e+      +++if+++++ +l+ ++ 
  KOO24573.1 289 FGRDEA-----EDSWIARAVA-----RgelqlvrevsvlewhelsppYVASLYWTCTTVTTVGYGDIAAVTTNER------IYAIFCLIFGTVLFGYVM 371
                 622222.....2223322222.....13333355555566777888899**************************......*************99988 PP

                 HHH CS
   Ion_trans 231 avi 233
                 +  
  KOO24573.1 372 GSA 374
                 765 PP

>> Ion_trans_2  Ion channel
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.6   3.3     6e-14   1.8e-10      25      73 ..     326     374 ..     311     379 .. 0.89

  Alignments for each domain:
  == domain 1  score: 40.6 bits;  conditional E-value: 6e-14
                  HHHHHHHHHHHHTTS----SSTT-----HHHHHHHHHHHHHHHHHHHHH CS
  Ion_trans_2  25 fldalYfsfvtltTiGYGdivpetdagrlftivyillGlalfalflavl 73 
                  ++ +lY++++t+tT+GYGdi+++t   r+ +i+ +++G +lf++++   
   KOO24573.1 326 YVASLYWTCTTVTTVGYGDIAAVTTNERIYAIFCLIFGTVLFGYVMGSA 374
                  6789*******************6666*****************99765 PP

>> cNMP_binding  Cyclic nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.7   0.1     8e-11   2.4e-07       4      88 ..     483     607 ..     480     608 .. 0.86

  Alignments for each domain:
  == domain 1  score: 30.7 bits;  conditional E-value: 8e-11
                   E-TT-EEE-TTSB-SEEEEEEES-EEEE....................EEETTS.E.EEEEEE-TTEEESHHHHH.................HTS-. CS
  cNMP_binding   4 fkagevifrqGdpadslyivlsGevrvy....................rlsedgke.vvlavlgpGdlfGelall.................tgep. 61 
                   + +++ i+++G++a+++++  +G++ v+                    +  + g + +++a+lgpG+l+Ge+all                 +++p 
    KOO24573.1 483 CCPNDDIIQEGTRATEFFLMSKGQAGVFyrpnsrgrsdsstslslgdvAHLATGSTaRLVATLGPGALLGEIALLkpsdlgvrsmtndpmlkREGPr 579
                   57899**********************8788888887777777777774444444446999************************999999955556 PP

                   .-SSEEEESSTEEEEEEEHHHHHHHHHH CS
  cNMP_binding  62 .rtatvvAltdsellalprddflellqq 88 
                    rtatv Al+ +e++++++ +fl++l++
    KOO24573.1 580 lRTATVSALDFCEVFVVEAHAFLAILSN 607
                   8***********************9975 PP

>> Acyl-CoA_dh_C  Acetyl-CoA dehydrogenase C-terminal like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.1   6.4e-05      0.19      57     101 ..     361     403 ..     357     413 .. 0.86
   2 ?   -1.4   0.0      0.82   2.4e+03      94     118 ..     417     441 ..     404     443 .. 0.85
   3 ?   -0.3   0.3      0.37   1.1e+03       4      42 ..     705     746 ..     702     760 .. 0.59

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 6.4e-05
  Acyl-CoA_dh_C  57 lfGdvvigwlllrqalaAqaklaagekdaafyegKlatarfFaer 101
                    +fG+v++g+++  + +  +a  +   + +afy+ +l++ ++F++r
     KOO24573.1 361 IFGTVLFGYVMGSATALINASSGT--SRNAFYHKRLQSLQWFMTR 403
                    69*********9999888877664..6788************986 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 0.82
  Acyl-CoA_dh_C  94 tarfFaervLPraaalaaaieagdd 118
                      rf+ ++ + +++a+ +++++ +d
     KOO24573.1 417 YFRFYWKHCVVNTDADDEIMQTLSD 441
                    579************9999987765 PP

  == domain 3  score: -0.3 bits;  conditional E-value: 0.37
  Acyl-CoA_dh_C   4 eieatvara...alkelaaaleaalealqeateallakaakg 42 
                    ei+a+v++a   +++ l ++ ++ +++++++ e +la+  ++
     KOO24573.1 705 EIAAVVSAAlrqEIRGLHERIADTVKEVKQIKEMMLADTVNQ 746
                    566677744443666677777777777777777777655443 PP

>> Tsc35  Testis-specific protein 35
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.1     5e-05      0.15      49      80 ..     711     742 ..     700     754 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 5e-05
       Tsc35  49 tkelknelrevreelkekmeeikqikdimdkd 80 
                    l+ e+r + e + + ++e+kqik++m  d
  KOO24573.1 711 SAALRQEIRGLHERIADTVKEVKQIKEMMLAD 742
                 5679*************************777 PP

>> WRW  Mitochondrial F1F0-ATP synthase, subunit f
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.1       1.1   3.2e+03      72      93 ..     351     372 ..     347     376 .. 0.84
   2 ?    8.5   1.2   0.00087       2.6      35      72 ..     394     429 ..     383     443 .. 0.74

  Alignments for each domain:
  == domain 1  score: -1.4 bits;  conditional E-value: 1.1
         WRW  72 ragiapffqvlvavmllfYlin 93 
                 +++i  +f ++++++l+ Y++ 
  KOO24573.1 351 NERIYAIFCLIFGTVLFGYVMG 372
                 67888999***********986 PP

  == domain 2  score: 8.5 bits;  conditional E-value: 0.00087
         WRW  35 LgelpswlsrRekspkalagalsrafwRwqhkyvqpkr 72 
                 L+ l +w+++R+k p++l   + r ++R+ +k++  + 
  KOO24573.1 394 LQSL-QWFMTRQKLPQELQTRI-RRYFRFYWKHCVVNT 429
                 5555.7***********77766.668899999877655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (783 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       855  (0.0476881); expected 358.6 (0.02)
Passed bias filter:                      627  (0.0349713); expected 358.6 (0.02)
Passed Vit filter:                        54  (0.00301188); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.72u 0.27s 00:00:00.99 Elapsed: 00:00:00.43
# Mc/sec: 5509.82
//
Query:       KOO24574.1  [L=189]
Description: hypothetical protein Ctob_006425 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.015   15.3   0.0      0.018   15.0   0.0    1.1  1  CHAD      CHAD domain


Domain annotation for each model (and alignments):
>> CHAD  CHAD domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.0   0.0     1e-06     0.018      46     137 ..      44     139 ..      34     177 .. 0.74

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 1e-06
                 S-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHH....HTS-TTTCGGGHHHHHHHHHHHHHHHHHHH.HHHTSHHHHHHHHHHHHHHT--S- CS
        CHAD  46 ldkeeaaalekelrwlaraLGeaRDldVllerllsrle...erlpaaeqealerllkrlekerkrararvl.aaLdsaryqalldaldallaaerl 137
                  +++++a+l  elr+  +aL +aRD d + ++l++  +   e +  +  +  e+l + ++++r + + + +   + ++ y +l++++d +  +e +
  KOO24574.1  44 APRPAFATLSLELRDAEAALDAARDTDSITASLEKLRDivdEYDGLQGPALTEELVNVMRTKRLSLQGTTVwNGIPEEAYNSLMRKVDPWRVTELA 139
                 3788999*********************77777766666665555555556788999999999988888667889999999999999999854443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (189 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       468  (0.026103); expected 358.6 (0.02)
Passed bias filter:                      385  (0.0214736); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.24s 00:00:00.63 Elapsed: 00:00:00.39
# Mc/sec: 1448.37
//
Query:       KOO24575.1  [L=112]
Description: hypothetical protein Ctob_007072 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.7e-10   39.6   0.0      6e-10   39.2   0.0    1.1  1  Pam16     Pam16
  ------ inclusion threshold ------
      0.084   13.0   0.0       0.13   12.4   0.0    1.3  1  DnaJ      DnaJ domain


Domain annotation for each model (and alignments):
>> Pam16  Pam16
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.2   0.0   6.7e-14     6e-10      37     105 ..      21      90 ..       2      95 .. 0.76

  Alignments for each domain:
  == domain 1  score: 39.2 bits;  conditional E-value: 6.7e-14
                 XX.XXXXX.XXXXXXXXXXX-HHHHHHHHT--G--SHHHHHHHHHHHHHHT-CCCTS-HHHHHHHHHHHH CS
       Pam16  37 dartsase.reaaksnlkGisleeslkilnveedlnreevekryehlfevndkskGGslylqskvfrake 105
                 +a   a   +   +s  +G+   e+  ilnv+    + ev + ++ l e+nd skGGs ylq kv  a +
  KOO24575.1  21 GASAAANAaKAGLRSGRGGLLESEARMILNVKPTATEAEVLEAHKRLIEMNDPSKGGSKYLQQKVSNACD 90 
                 33223333133345677899999**********99******************************98865 PP

>> DnaJ  DnaJ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   1.4e-05      0.13       5      53 ..      48      92 ..      47      96 .. 0.79

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 1.4e-05
                HHTSSTTG-HHHHHHHHHHHHHHHSTTTSCCHHHHHHHHHHHHHHHHHH CS
        DnaJ  5 iLgvskdasedeIkkaYrklalkyHPDknpkdpeaeekFkeineAyevL 53
                iL+v+++a+e+e+ +a+++l+ +  P k  +++      +++++A +vL
  KOO24575.1 48 ILNVKPTATEAEVLEAHKRLIEMNDPSKG-GSK---YLQQKVSNACDVL 92
                8***********************99998.333...3334566666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (112 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       352  (0.019633); expected 358.6 (0.02)
Passed bias filter:                      247  (0.0137766); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.36u 0.29s 00:00:00.64 Elapsed: 00:00:00.43
# Mc/sec: 779.84
//
Query:       KOO24576.1  [L=198]
Description: YagE family protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.3e-42  144.6   0.1    4.6e-42  144.1   0.1    1.2  1  DUF155    Uncharacterised ACR, YagE family COG1723


Domain annotation for each model (and alignments):
>> DUF155  Uncharacterised ACR, YagE family COG1723
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  144.1   0.1   2.6e-46   4.6e-42      38     176 .]      11     148 ..       3     148 .. 0.96

  Alignments for each domain:
  == domain 1  score: 144.1 bits;  conditional E-value: 2.6e-46
      DUF155  38 reeeqeteeleyvydeqsessrikgdvivlkskslleklaiShalaqSvkLdvlEesldellestekipkelakkgklklsrkellkktgellslrinl 136
                 + +e+e +++ y++ e   + +i +dvi+l+s ++leklaiS++laqSvkL v+E+ +++++++t++ip+++a+ gk++l+r ++ k++g+l+  r+++
  KOO24576.1  11 PLSEEEVDDFGYTHLE-GAKASIAKDVITLTSYQILEKLAISFGLAQSVKLGVFERTVEQTIQETRSIPERMARDGKIRLRRAAITKRIGQLFVDRASI 108
                 45677799****9987.77899********9999***************************************************************** PP

      DUF155 137 nlkselldtPdffWeepeleslyeavseyleikeRikiLn 176
                 nl+s++ld+P+ffWe++e+ sly + s+ylei++R+++Ln
  KOO24576.1 109 NLHSDILDHPEFFWENDEWLSLYVRASKYLEIDRRTEVLN 148
                 ***************************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (198 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       886  (0.0494171); expected 358.6 (0.02)
Passed bias filter:                      549  (0.0306208); expected 358.6 (0.02)
Passed Vit filter:                        53  (0.0029561); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.28s 00:00:00.72 Elapsed: 00:00:00.44
# Mc/sec: 1347.63
//
Query:       KOO24577.1  [L=333]
Description: hypothetical protein Ctob_007070 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
   5.3e-107  358.6   0.0   5.9e-107  358.4   0.0    1.0  1  5_nucleotid  5' nucleotidase family
  ------ inclusion threshold ------
      0.089   12.9   0.1       0.24   11.5   0.1    1.7  1  MDH          Methanol dehydrogenase beta subunit


Domain annotation for each model (and alignments):
>> 5_nucleotid  5' nucleotidase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  358.4   0.0  6.6e-111  5.9e-107       9     343 ..       1     331 [.       1     333 [] 0.93

  Alignments for each domain:
  == domain 1  score: 358.4 bits;  conditional E-value: 6.6e-111
                  TTT--EEEE-TBTTTBEE-HHHHHHHHHHHHHHHHHHHS---GGGGG----GGG--TT-EEETTTTEEEEEBTTSBEEEEEETTEEE-HHHHHHHHSS CS
  5_nucleotid   9 LkkIkvvGFDmDYTLaqYkseeleelaydlalekLveklgYpeeilkleydpefairGLvlDkkkGnllkvdrfknvkvayhGlrelskeevrelYgn 106
                  +++I++vGFD DYTLa+Yk  +++ layd a++kL+  +gYp+e+ +++ydp+   rGL++Dk++Gn+lk+dr+k+vkvayhGl++l++ e++++Y +
   KOO24577.1   1 MAQIQAVGFDLDYTLAEYK-IAFDLLAYDGAVRKLIA-MGYPKEVASFKYDPKRYQRGLLIDKQRGNVLKLDRHKYVKVAYHGLSKLESAERKAIYAR 96 
                  789****************.9***************9.************************************************************ PP

                  SB--TTST...TEE----TTHHHHHHHHHHHHHHHTT........TSS--HHHHHHHHHHHHHHHHHHSHHHHHHHTTHHHHEE--HHHHHHHHHHHH CS
  5_nucleotid 107 klikldeas.krlallntlFslpeayLlaqlvdlfdkeeekakeeelelsyeslykdvreavdlvHrdgslkkevledlekyiekdpelvelLerlre 203
                  ++  + + s +++a ++t F l +++L++qlvdl+d+ +     e+l  sy+++y++vr+avdl+H dg++k+ v+ +++kyi ++pel+++L++l+ 
   KOO24577.1  97 SFEAQPTFSpPEYASIDTDFLLVDVCLFCQLVDLKDRFP-----EQLLQSYATIYQQVRRAVDLCHCDGEIKDPVAVEPAKYIYESPELAAMLSQLKL 189
                  *6555554479*************************993.....346778************************************************ PP

                  TT-EEEEE-SS-HHHHHHHHHHHHGGGS-TT--GGGGESEEEES--TTHHHHS.---EEEE-TTT-..-EEE--S--SE..........EEEE--HHH CS
  5_nucleotid 204 agkklfllTNSefdytnkvmkyllgkeeekkkswrdlFDvvivkarKPkFfee.rtplrevdtetgklklekvkgklek........gkvYqgGslke 292
                   gk++fllTNS +dyt++v+++llg      ++w ++FD+vi++arKP F  +   p+++v+t + +l  ++++   e+        gkv+qgG++++
   KOO24577.1 190 GGKQVFLLTNSLYDYTKVVLEFLLG------PHWLNYFDLVICGARKPGFLLDpYLPIFRVNTADASL--QNIEMGSEAlaqralseGKVFQGGNWNH 279
                  *************************......89*****************************999855..44432222233355555*********** PP

                  HHHHTT--.GGGEEEEESS--S-HHHHHHCH-SEEEEE-TTHHHHHHHHHHT CS
  5_nucleotid 293 lekllgvk.gkevLYvGDhiygDilkskkklgWrTalvvpELeeElevleek 343
                  l+++l ++ g+ ++YvGDh+y+Dil+sk++lgWrT+l+vpEL +E+++le++
   KOO24577.1 280 LHRMLRLQtGSALMYVGDHMYSDILRSKRTLGWRTVLMVPELCHEVSMLERS 331
                  ********9***************************************9987 PP

>> MDH  Methanol dehydrogenase beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.1   2.7e-05      0.24      37      68 ..      37      70 ..      13      81 .. 0.73

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 2.7e-05
                TTS-S--TTSTT-----HHHH..THHHHHHHHHH CS
         MDH 37 PgyPekvaGskydPkhdpkel..nkqeesikame 68
                 gyP+ va  kydPk  ++ l  +kq+  + +++
  KOO24577.1 37 MGYPKEVASFKYDPKRYQRGLliDKQRGNVLKLD 70
                59*************9988753367776666555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (333 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       447  (0.0249317); expected 358.6 (0.02)
Passed bias filter:                      433  (0.0241508); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.48u 0.25s 00:00:00.73 Elapsed: 00:00:00.43
# Mc/sec: 2306.56
//
Query:       KOO24578.1  [L=606]
Description: mical-like protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.3e-11   44.0   0.2    9.4e-11   41.2   0.1    2.1  2  SH3_2          Variant SH3 domain
    2.6e-11   43.2   0.0    6.1e-11   42.0   0.0    1.6  1  SH3_9          Variant SH3 domain
    3.8e-09   36.0   0.0    7.5e-09   35.1   0.0    1.5  1  SH3_1          SH3 domain
    0.00036   19.9   0.1     0.0007   18.9   0.1    1.4  1  FAD_binding_3  FAD binding domain
    0.00086   18.6   0.0     0.0014   17.9   0.0    1.2  1  Pyr_redox_3    Pyridine nucleotide-disulphide oxidoreductase
    0.00093   18.5   0.1     0.0018   17.6   0.1    1.4  1  Pyr_redox_2    Pyridine nucleotide-disulphide oxidoreductase
  ------ inclusion threshold ------
      0.012   14.4   0.0      0.019   13.7   0.0    1.3  1  HI0933_like    HI0933-like protein
      0.012   16.1   0.2      0.023   15.2   0.2    1.4  1  Pyr_redox      Pyridine nucleotide-disulphide oxidoreductase
      0.012   14.7   0.1      0.031   13.4   0.1    1.7  1  FAD_binding_2  FAD binding domain
       0.04   13.5   0.1      0.082   12.5   0.1    1.5  1  DAO            FAD dependent oxidoreductase
      0.046   14.0   0.0       0.18   12.0   0.0    2.0  1  NAD_binding_8  NAD(P)-binding Rossmann-like domain
       0.12   12.8   0.0        0.3   11.5   0.0    1.7  1  NAD_binding_7  Putative NAD(P)-binding


Domain annotation for each model (and alignments):
>> SH3_2  Variant SH3 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.2   0.1   6.3e-14   9.4e-11       2      55 ..     120     170 ..     119     172 .. 0.93
   2 ?   -0.0   0.0      0.48   7.2e+02       9      23 ..     285     299 ..     283     307 .. 0.89

  Alignments for each domain:
  == domain 1  score: 41.2 bits;  conditional E-value: 6.3e-14
                 EEESS-B-SCGCCB--B-TTEEEEEE..EEEECTTEEEEEECCCEEEEEGCGEE CS
       SH3_2   2 vraiedyvgedkseLsfkkGdvikvlslgskdsdgwwegevgGrvGlfPsslve 55 
                 +r+i+ + +e  +e+s+ +Gd++ v+   +++sdgwweg+ g+r+GlfP ++v+
  KOO24578.1 120 GRCIQPFHAEQGGEMSLAVGDIVLVT---DQGSDGWWEGTCGKRKGLFPGNFVK 170
                 67888888999999************...***********************97 PP

  == domain 2  score: -0.0 bits;  conditional E-value: 0.48
                 -SCGCCB--B-TTEE CS
       SH3_2   9 vgedkseLsfkkGdv 23 
                 +g d++ L++ kG++
  KOO24578.1 285 NGVDCENLEYLKGET 299
                 789**********95 PP

>> SH3_9  Variant SH3 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.0   0.0   4.1e-14   6.1e-11       3      49 .]     124     170 ..     123     170 .. 0.96

  Alignments for each domain:
  == domain 1  score: 42.0 bits;  conditional E-value: 4.1e-14
       SH3_9   3 ypyepreddeLsLqrGDvitvieesedgWlegsltGrtGlvPanyve 49 
                  p+ + +  e+sL +GD+++v ++ +dgW+eg+ + r+Gl+P n+v+
  KOO24578.1 124 QPFHAEQGGEMSLAVGDIVLVTDQGSDGWWEGTCGKRKGLFPGNFVK 170
                 6999999***************999********************97 PP

>> SH3_1  SH3 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.1   0.0     5e-12   7.5e-09       5      47 ..     125     165 ..     121     166 .. 0.94

  Alignments for each domain:
  == domain 1  score: 35.1 bits;  conditional E-value: 5e-12
                 SBEXSSTTBXEBSTTEEEEEEEECSSSEEEEEETTSTEEEEEE CS
       SH3_1   5 DYeaeesdELsfkkGDviivleksedgWwkgrlkgtgkeGliP 47 
                 ++ ae+ +E+s+  GD++ v ++  dgWw+g +   +++Gl+P
  KOO24578.1 125 PFHAEQGGEMSLAVGDIVLVTDQGSDGWWEGTCG--KRKGLFP 165
                 8*********************************..58***** PP

>> FAD_binding_3  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.9   0.1   4.7e-07    0.0007       3      37 ..     186     220 ..     185     223 .. 0.93

  Alignments for each domain:
  == domain 1  score: 18.9 bits;  conditional E-value: 4.7e-07
                    EEEEE--SHHHHHHHHHHHHTTHHEEEEESSSSSC CS
  FAD_binding_3   3 dVlIVGaGpaGlmlallLseaGvrvvlvekrsttv 37 
                     V++ GaGp+Gl  a +   +G++v++vekr+t +
     KOO24578.1 186 RVVVSGAGPVGLRCAVECLLYGIDVTIVEKRETFS 220
                    58999**************************9976 PP

>> Pyr_redox_3  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.9   0.0   9.6e-07    0.0014       2      42 ..     189     231 ..     188     239 .. 0.84

  Alignments for each domain:
  == domain 1  score: 17.9 bits;  conditional E-value: 9.6e-07
  Pyr_redox_3   2 IiGaGPaGlaaaielkkagledylilEkg...nignsiyrypke 42 
                  + GaGP Gl +a+e+   g+ d++i+Ek    + +n ++ +p++
   KOO24578.1 189 VSGAGPVGLRCAVECLLYGI-DVTIVEKRetfSRVNILTLWPQT 231
                  56******************.8******9444458888888875 PP

>> Pyr_redox_2  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.6   0.1   1.2e-06    0.0018     137     178 ..     179     220 ..     157     225 .. 0.84

  Alignments for each domain:
  == domain 1  score: 17.6 bits;  conditional E-value: 1.2e-06
                  CCSS-TSEEEEES-SHHHHHHHHHHHHHT-EEEEEESSSSSS CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2 137 klkllpkrivvvGgGyiGvElAaalaklgkevtlveardrll 178
                  +    p r+vv G+G++G+ +A +   +g +vt+ve r+++ 
   KOO24578.1 179 SASSGPLRVVVSGAGPVGLRCAVECLLYGIDVTIVEKRETFS 220
                  45556689*****************************99875 PP

>> HI0933_like  HI0933-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.0   1.3e-05     0.019       2      36 ..     186     220 ..     185     224 .. 0.93

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 1.3e-05
                  SEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSS- CS
  HI0933_like   2 dviviGgGaAGlmaAisaakrgkrVlllekakklg 36 
                  +v+v G+G+ Gl +A+++   g +V+++ek +++ 
   KOO24578.1 186 RVVVSGAGPVGLRCAVECLLYGIDVTIVEKRETFS 220
                  699***************************98876 PP

>> Pyr_redox  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.2   0.2   1.6e-05     0.023       1      35 [.     186     220 ..     186     224 .. 0.94

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 1.6e-05
                 EEEEECSSHHHHHHHHHHHHTTSEEEEEESSSSSS CS
   Pyr_redox   1 kvvvvGgGyiglElAgalaelgkkVtvversdkll 35 
                 +vvv G+G +gl +A +   +g +Vt+ve ++++ 
  KOO24578.1 186 RVVVSGAGPVGLRCAVECLLYGIDVTIVEKRETFS 220
                 79****************************99875 PP

>> FAD_binding_2  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.1   2.1e-05     0.031       2      34 ..     187     219 ..     186     224 .. 0.93

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 2.1e-05
                    EEEE--SHHHHHHHHHHHHTTT-EEEEESSSGG CS
  FAD_binding_2   2 viViGsGlAGLaAAleaaeaGlkvavvekeqef 34 
                    v+V G+G  GL++A+e+   G +v++vek + f
     KOO24578.1 187 VVVSGAGPVGLRCAVECLLYGIDVTIVEKRETF 219
                    89***************************9875 PP

>> DAO  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.1   5.5e-05     0.082       2      32 ..     187     219 ..     186     223 .. 0.92

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 5.5e-05
                 EEEECTSHHHHHHHHHHHHTT..EEEEESSSST CS
         DAO   2 vviiGGGiiGlstAyeLarrg..Vtllekgdia 32 
                 vv+ G+G +Gl +A e    g  Vt++ek++ +
  KOO24578.1 187 VVVSGAGPVGLRCAVECLLYGidVTIVEKRETF 219
                 9999**************99*********9766 PP

>> NAD_binding_8  NAD(P)-binding Rossmann-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   0.00012      0.18       3      31 ..     191     219 ..     189     225 .. 0.94

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 0.00012
                    --SHHHHHHHHHHHCCTEEEEEE-SSSSS CS
  NAD_binding_8   3 GaGlsGlvaAylLakagfdvlllekrdrl 31 
                    GaG  Gl +A ++  +g+dv+++ekr+ +
     KOO24578.1 191 GAGPVGLRCAVECLLYGIDVTIVEKRETF 219
                    9************************9865 PP

>> NAD_binding_7  Putative NAD(P)-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0    0.0002       0.3       9      40 ..     186     217 ..     183     310 .. 0.81

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.0002
  NAD_binding_7   9 kvlvvGgGevAarkvrklleagakvtvvapev 40 
                    +v+v G+G+v++r +   l +g +vt+v ++ 
     KOO24578.1 186 RVVVSGAGPVGLRCAVECLLYGIDVTIVEKRE 217
                    89**************************9983 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (606 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       924  (0.0515366); expected 358.6 (0.02)
Passed bias filter:                      533  (0.0297284); expected 358.6 (0.02)
Passed Vit filter:                        64  (0.00356964); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.64u 0.31s 00:00:00.95 Elapsed: 00:00:00.45
# Mc/sec: 4050.44
//
Query:       KOO24579.1  [L=427]
Description: hypothetical protein Ctob_007074 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    0.00094   18.8   1.4     0.0027   17.4   1.4    1.9  1  IQ        IQ calmodulin-binding motif


Domain annotation for each model (and alignments):
>> IQ  IQ calmodulin-binding motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.4   1.4   1.5e-07    0.0027       2      19 ..     216     233 ..     215     235 .. 0.90

  Alignments for each domain:
  == domain 1  score: 17.4 bits;  conditional E-value: 1.5e-07
                 HHHHHHHHHHHHHHHHHH CS
          IQ   2 kaaikIQaawRGylaRkr 19 
                  aa++IQa  RGyl+R +
  KOO24579.1 216 VAATRIQATARGYLTRMQ 233
                 69**************76 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (427 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1316  (0.0734006); expected 358.6 (0.02)
Passed bias filter:                      466  (0.0259914); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.54u 0.25s 00:00:00.79 Elapsed: 00:00:00.40
# Mc/sec: 3168.44
//
Query:       KOO24580.1  [L=348]
Description: hypothetical protein Ctob_007067 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    9.8e-15   55.2   0.0    1.7e-14   54.4   0.0    1.5  1  KIAA1430  KIAA1430 homologue


Domain annotation for each model (and alignments):
>> KIAA1430  KIAA1430 homologue
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.4   0.0   9.3e-19   1.7e-14      17     102 .]      61     174 ..      32     174 .. 0.88

  Alignments for each domain:
  == domain 1  score: 54.4 bits;  conditional E-value: 9.3e-19
    KIAA1430  17 pkkpshlskkkkklqleeerlkeiereNqiLleklseimrrkgk.............................kksassqsqksktaskslnaenrkke 86 
                 p  ++h ++++k++q++ er+ +ie+eN++Ll+k+s+ m   ++                             +++ +  ++ s+ +++sln   r++e
  KOO24580.1  61 P-VYRHVQQNLKRQQVQSERYDTIEHENRLLLDKMSQLMAPGSSvldptagtwefspgvrlnrfqipvidhsiSTQPTFPQRGSAREPESLNLGLRRRE 158
                 4.48899***********************************777888888888888889999999999988855556667788889************ PP

    KIAA1430  87 lqkIeeENqkllkRlq 102
                 l++I++EN+ +  R+q
  KOO24580.1 159 LERITSENRGIVLRIQ 174
                 **************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (348 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       357  (0.0199119); expected 358.6 (0.02)
Passed bias filter:                      276  (0.0153941); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.23s 00:00:00.68 Elapsed: 00:00:00.39
# Mc/sec: 2644.01
//
Query:       KOO24581.1  [L=245]
Description: kelch repeat-containing protein, partial [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    7.7e-18   64.1   0.3    1.2e-05   25.1   0.0    4.3  4  Kelch_5   Kelch motif
    1.7e-17   63.1   0.1    5.3e-05   23.2   0.0    3.7  4  Kelch_4   Galactose oxidase, central domain
    1.6e-15   56.9   0.4    4.1e-05   23.7   0.1    3.4  3  Kelch_3   Galactose oxidase, central domain
    6.2e-14   51.7   0.1      8e-05   22.8   0.0    3.8  4  Kelch_6   Kelch motif
      5e-13   48.4   0.0     0.0029   17.2   0.0    3.4  3  Kelch_1   Kelch motif
    1.7e-10   40.4   0.2      0.041   13.9   0.0    3.8  4  Kelch_2   Kelch motif


Domain annotation for each model (and alignments):
>> Kelch_5  Kelch motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.5   0.0   3.8e-05      0.11      18      42 .]       2      25 ..       1      25 [. 0.93
   2 !   13.7   0.0   1.5e-05     0.045       2      39 ..      37      75 ..      36      78 .. 0.75
   3 !   25.1   0.0   4.1e-09   1.2e-05       1      33 [.      91     122 ..      91     129 .. 0.80
   4 !    7.9   0.0     0.001         3       1      35 [.     147     180 ..     147     182 .. 0.81

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 3.8e-05
     Kelch_5 18 YvyGGkvgrdgsvsddvyvLdlpsf 42
                 v+GG ++  +++ +d+y+Ldl++f
  KOO24581.1  2 VVFGGLSA-LSIALSDLYRLDLTTF 25
                69*****7.9999**********99 PP

  == domain 2  score: 13.7 bits;  conditional E-value: 1.5e-05
     Kelch_5  2 PppRaghcavtvsekiYv.yGGkvgrdgsv..sddvyvLdl 39
                P++R gh+a+ v ++i++  GG ++  +++  ++dv+ Ld+
  KOO24581.1 37 PQARKGHAACLVLNSILIvSGGSNQ--EIPvfFGDVHMLDI 75
                9*********986555551666664..665768****9997 PP

  == domain 3  score: 25.1 bits;  conditional E-value: 4.1e-09
     Kelch_5   1 iPppRaghcavtvsekiYvyGGkvgrdgsvsdd 33 
                 +P++R gh++v v+e +Y++GG++  +g+   d
  KOO24581.1  91 VPAGRDGHAMVLVDETVYIFGGVNK-EGEKLAD 122
                 69*********************94.3333444 PP

  == domain 4  score: 7.9 bits;  conditional E-value: 0.001
     Kelch_5   1 iPppRaghcavtvsekiYvyGGkvgrdgsvs.ddvy 35 
                 +P+pR+g  a++  +++Yv+ G ++  ++   dd++
  KOO24581.1 147 LPEPRWGIPAFASVGSMYVMFGAGT--NDMLkDDAW 180
                 6******************999995..444437777 PP

>> Kelch_4  Galactose oxidase, central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.5   0.0   5.6e-08   0.00017      16      47 ..       2      33 ..       1      38 [. 0.90
   2 !   14.3   0.0     1e-05     0.031       1      44 [.      39      84 ..      39      92 .. 0.83
   3 !   23.2   0.0   1.8e-08   5.3e-05       2      36 ..      95     128 ..      94     148 .. 0.91
   4 ?   -3.1   0.0       2.7   8.1e+03      19      32 ..     168     180 ..     165     181 .. 0.54

  Alignments for each domain:
  == domain 1  score: 21.5 bits;  conditional E-value: 5.6e-08
     Kelch_4 16 ylfGGrgedgtllndlylldlstntWrrlgsl 47
                ++fGG ++   +l+dly+ldl+t  W++l+++
  KOO24581.1  2 VVFGGLSALSIALSDLYRLDLTTFAWTTLTPS 33
                79**************************9654 PP

  == domain 2  score: 14.3 bits;  conditional E-value: 1e-05
     Kelch_4  1 pRaghsatsipdgtiylfGGrgedg.tllndlylldlstntW.rrl 44
                +R gh+a+ + +  +++ GG + +   +++d++ ld++ n W ++ 
  KOO24581.1 39 ARKGHAACLVLNSILIVSGGSNQEIpVFFGDVHMLDIARNVWmQPA 84
                799*******9888888888887548**************996554 PP

  == domain 3  score: 23.2 bits;  conditional E-value: 1.8e-08
     Kelch_4   2 RaghsatsipdgtiylfGGrgedgtllndlylldl 36 
                 R gh+++ + d t+y+fGG + +g+ l+dl+ +++
  KOO24581.1  95 RDGHAMVLV-DETVYIFGGVNKEGEKLADLWSFSV 128
                 889******.68********************986 PP

  == domain 4  score: -3.1 bits;  conditional E-value: 2.7
     Kelch_4  19 GGrgedgtllndly 32 
                 G +g+++ l +d++
  KOO24581.1 168 G-AGTNDMLKDDAW 180
                 4.444434666666 PP

>> Kelch_3  Galactose oxidase, central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.7   0.1   1.4e-08   4.1e-05       4      48 ..       1      47 [.       1      48 [. 0.88
   2 !   19.5   0.0     3e-07   0.00089       5      47 ..      54     101 ..      50     103 .. 0.76
   3 !   10.4   0.0   0.00021      0.63       2      41 ..     105     151 ..     104     158 .. 0.86

  Alignments for each domain:
  == domain 1  score: 23.7 bits;  conditional E-value: 1.4e-08
     Kelch_3  4 lyifGGlgddg.qdrlndvyvydldtntWaei...aslppaRaghaata 48
                +++fGGl       +l+d+y++dl t  W+++   +  p+aR ghaa++
  KOO24581.1  1 MVVFGGLS--AlSIALSDLYRLDLTTFAWTTLtpsGVAPQARKGHAACL 47
                89******..779************99***99744556*********96 PP

  == domain 2  score: 19.5 bits;  conditional E-value: 3e-07
     Kelch_3   5 yifGGlgddgqdrl..ndvyvydldtntWaei.....aslppaRaghaat 47 
                  ++GG +   + ++  +dv+++d+++n W +       + p +R gha++
  KOO24581.1  54 IVSGGSN--QEIPVffGDVHMLDIARNVWMQPapassRTVPAGRDGHAMV 101
                 4566666..5555567**************998755455799******98 PP

  == domain 3  score: 10.4 bits;  conditional E-value: 0.00021
     Kelch_3   2 drlyifGGlgddgqdrlndvyvydl...dtn..tWaei...aslppaR 41 
                 +++yifGG +   ++ l d++++++   +++   W +    + lp +R
  KOO24581.1 105 ETVYIFGGVN-KEGEKLADLWSFSVyaaVSGvlRWSQPvsmSALPEPR 151
                 689*******.78************77766689999888889999998 PP

>> Kelch_6  Kelch motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.7   0.0     2e-05      0.06      15      45 ..       2      32 ..       1      35 [. 0.94
   2 !   10.7   0.0   0.00017      0.52       1      40 [.      39      80 ..      39      82 .. 0.92
   3 !   22.8   0.0   2.7e-08     8e-05       2      35 ..      95     128 ..      95     151 .. 0.90
   4 ?   -1.6   0.0       1.3   3.7e+03       8      25 ..     158     174 ..     150     180 .. 0.57

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 2e-05
     Kelch_6 15 YifGGytdsspylnkvwvydpetksWeqlpp 45
                ++fGG+++ s +l++++++d+ t  W++l+p
  KOO24581.1  2 VVFGGLSALSIALSDLYRLDLTTFAWTTLTP 32
                69*****99******************9976 PP

  == domain 2  score: 10.7 bits;  conditional E-value: 0.00017
     Kelch_6  1 praghslvsvggkiYifGGytds..spylnkvwvydpetksW 40
                +r+gh++++v ++i i++G +++    ++ +v+ +d+  ++W
  KOO24581.1 39 ARKGHAACLVLNSILIVSGGSNQeiPVFFGDVHMLDIARNVW 80
                599******99***9998888888*99*************99 PP

  == domain 3  score: 22.8 bits;  conditional E-value: 2.7e-08
     Kelch_6   2 raghslvsvggkiYifGGytdsspylnkvwvydp 35 
                 r gh++v+v++++YifGG +  ++ l ++w +++
  KOO24581.1  95 RDGHAMVLVDETVYIFGGVNKEGEKLADLWSFSV 128
                 789*****************99**********95 PP

  == domain 4  score: -1.6 bits;  conditional E-value: 1.3
     Kelch_6   8 vsvggkiYifGGytdssp 25 
                 +svg+  ++fG  t+ ++
  KOO24581.1 158 ASVGSMYVMFGAGTN-DM 174
                 566664456677777.34 PP

>> Kelch_1  Kelch motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.9   0.0     1e-05     0.031      14      44 ..       1      32 [.       1      34 [. 0.94
   2 !   13.7   0.0   1.2e-05     0.035       4      44 ..      43      85 ..      39      87 .. 0.80
   3 !   17.2   0.0   9.7e-07    0.0029       2      33 ..      95     127 ..      94     130 .. 0.90

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 1e-05
                EEEEEEBCS.SSBEEEEEEEETTTTEEEEECC CS
     Kelch_1 14 iYviGGsdg.gnalssvevyDpetntWrelps 44
                + v+GG +  + als+++++D++t  W+ l++
  KOO24581.1  1 MVVFGGLSAlSIALSDLYRLDLTTFAWTTLTP 32
                579*************************9987 PP

  == domain 2  score: 13.7 bits;  conditional E-value: 1.2e-05
                SEEEEEETTEEEEEEEBCS..SSBEEEEEEEETTTTEEEEECC CS
     Kelch_1  4 gagavvvggkiYviGGsdg..gnalssvevyDpetntWrelps 44
                +a++ v++  + v GGs+   + +  +v ++D   n W + ++
  KOO24581.1 43 HAACLVLNSILIVSGGSNQeiPVFFGDVHMLDIARNVWMQPAP 85
                5677777777777777777*******************98665 PP

  == domain 3  score: 17.2 bits;  conditional E-value: 9.7e-07
                 BBSEEEEEETTEEEEEEEBCS.SSBEEEEEEEE CS
     Kelch_1   2 ragagavvvggkiYviGGsdg.gnalssvevyD 33 
                 r g+++v v++ +Y++GG +  g+ l +++ ++
  KOO24581.1  95 RDGHAMVLVDETVYIFGGVNKeGEKLADLWSFS 127
                 679******************999999999886 PP

>> Kelch_2  Kelch motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.4   0.0   0.00074       2.2      15      49 .]       2      34 ..       1      34 [. 0.93
   2 !   13.9   0.0   1.4e-05     0.041       4      42 ..      42      80 ..      39      84 .. 0.90
   3 !   13.6   0.0   1.7e-05      0.05       1      32 [.      94     128 ..      94     135 .. 0.84
   4 ?   -2.0   0.0       1.4   4.2e+03      12      24 ..     161     172 ..     158     180 .. 0.69

  Alignments for each domain:
  == domain 1  score: 8.4 bits;  conditional E-value: 0.00074
     Kelch_2 15 yvvGGahtdnpnlsssdvhvldlekhvWeevtplg 49
                +v+GG   +  + + sd++ ldl +  W+ +tp+g
  KOO24581.1  2 VVFGGL--SALSIALSDLYRLDLTTFAWTTLTPSG 34
                799999..9999********************986 PP

  == domain 2  score: 13.9 bits;  conditional E-value: 1.4e-05
     Kelch_2  4 ghsss.vpggkiyvvGGahtdnpnlsssdvhvldlekhvW 42
                gh+++ v+++ ++v GG+ +++ + ++ dvh ld   +vW
  KOO24581.1 42 GHAAClVLNSILIVSGGS-NQEIPVFFGDVHMLDIARNVW 80
                67777699**********.999999*************** PP

  == domain 3  score: 13.6 bits;  conditional E-value: 1.7e-05
     Kelch_2   1 rrgghsssvpggkiyvvGGa...htdnpnlsssdv 32 
                 +r gh+++ ++  +y++GG+   ++ + +l+s++v
  KOO24581.1  94 GRDGHAMVLVDETVYIFGGVnkeGEKLADLWSFSV 128
                 589*****************887666666666666 PP

  == domain 4  score: -2.0 bits;  conditional E-value: 1.4
     Kelch_2  12 gkiyvvGGahtdn 24 
                 g +yv+ Ga + n
  KOO24581.1 161 GSMYVMFGA-GTN 172
                 678999999.333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (245 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       251  (0.0139997); expected 358.6 (0.02)
Passed bias filter:                      231  (0.0128842); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.38u 0.24s 00:00:00.62 Elapsed: 00:00:00.38
# Mc/sec: 1912.13
//
Query:       KOO24582.1  [L=247]
Description: hypothetical protein Ctob_007069 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.024   14.4   3.0       0.82    9.4   0.1    2.3  2  PsbQ      Oxygen evolving enhancer protein 3 (PsbQ)


Domain annotation for each model (and alignments):
>> PsbQ  Oxygen evolving enhancer protein 3 (PsbQ)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.2   0.4   0.00085        15      22      51 ..      36      63 ..      18      83 .. 0.71
   2 ?    9.4   0.1   4.6e-05      0.82     146     197 ..     167     217 ..     163     219 .. 0.82

  Alignments for each domain:
  == domain 1  score: 5.2 bits;  conditional E-value: 0.00085
        PsbQ 22 aaeeeesRRavlglaaaalaagslaaaala 51
                ++ +++sRRa++ +aaa l+ g   a+ +a
  KOO24582.1 36 MSAASSSRRAMIEGAAALLLFGG--APLAA 63
                36788*******99999887653..22233 PP

  == domain 2  score: 9.4 bits;  conditional E-value: 4.6e-05
        PsbQ 146 akpkdekkslldlanklfdsieeLdkaaktKddaeaekyYaeTksiLdeVla 197
                 +kp ++ k++++ a+ +f ++++L+ka  + d + ++ +Ya+   +L+  l+
  KOO24582.1 167 GKPPEKVKQVKE-AKAFFGQVDKLQKARMKGDRKGTALAYAASIEALEAFLN 217
                 555555555555.678****************************99988765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (247 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       530  (0.029561); expected 358.6 (0.02)
Passed bias filter:                      444  (0.0247643); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.25s 00:00:00.70 Elapsed: 00:00:00.42
# Mc/sec: 1778.01
//
Query:       KOO24583.1  [L=1016]
Description: voltage dependent ion channel [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.8e-43  141.8  27.9    2.2e-05   23.7   0.1    8.6  8  EF-hand_1        EF hand
    8.6e-41  134.4  25.2    2.4e-05   23.9   0.0    8.7  8  EF-hand_6        EF-hand domain
    1.5e-36  124.6  23.3    4.5e-09   36.6   3.3    6.0  7  EF-hand_7        EF-hand domain pair
    1.4e-29  100.3  27.6    0.00011   21.5   0.0    8.4  8  EF-hand_5        EF hand
    4.8e-24   84.0  24.8      3e-05   23.8   2.1    8.0  8  EF-hand_8        EF-hand domain pair
    2.6e-05   24.1  15.4      0.046   13.7   0.5    4.6  6  EF-hand_4        Cytoskeletal-regulatory complex EF hand
    0.00052   19.6   0.1     0.0016   18.1   0.1    1.9  1  IQ               IQ calmodulin-binding motif
  ------ inclusion threshold ------
      0.016   15.1   1.4         10    6.0   0.0    4.5  5  Caleosin         Caleosin related protein
      0.021   15.0   0.4      0.045   13.9   0.4    1.6  1  Milton           Kinesin associated protein
      0.027   14.6   0.0       0.41   10.8   0.0    2.7  2  DUF357           Protein of unknown function (DUF357)
      0.038   14.3   1.8         48    4.4   0.0    4.5  4  EF-hand_9        EF-hand domain
      0.048   14.7   0.9       0.23   12.5   0.9    2.3  1  Methyltransf_24  Methyltransferase domain
        1.7    9.0  13.6         12    6.2   1.1    5.0  7  SPARC_Ca_bdg     Secreted protein acidic and rich in cysteine


Domain annotation for each model (and alignments):
>> EF-hand_1  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.2   1.0     2e-07   0.00028       6      27 ..      28      49 ..      26      51 .. 0.93
   2 !   13.3   0.0   3.4e-05     0.046       1      24 [.      60      83 ..      60      86 .. 0.90
   3 !   20.1   0.0   2.2e-07   0.00031       3      28 ..      98     123 ..      96     124 .. 0.91
   4 !   22.6   1.7   3.5e-08   4.8e-05       1      27 [.     134     160 ..     134     162 .. 0.93
   5 !   23.7   0.1   1.6e-08   2.2e-05       3      28 ..     229     254 ..     227     255 .. 0.91
   6 !   20.9   0.3   1.3e-07   0.00017       1      26 [.     263     288 ..     263     289 .. 0.94
   7 !   21.6   0.0   7.2e-08    0.0001       4      27 ..     380     403 ..     377     405 .. 0.88
   8 !   12.5   0.0   5.7e-05     0.079       4      27 ..     420     443 ..     417     444 .. 0.91

  Alignments for each domain:
  == domain 1  score: 20.2 bits;  conditional E-value: 2e-07
                HHHHTTTSSSEEEHHHHHHHHH CS
   EF-hand_1  6 FrefDkDgdGkIdfeEfkellk 27
                F+ +D+D+d k+df+Ef+++++
  KOO24583.1 28 FAAVDVDNDNKLDFDEFCAMVR 49
                889*****************98 PP

  == domain 2  score: 13.3 bits;  conditional E-value: 3.4e-05
                HHHHHHHHHTTTSSSEEEHHHHHH CS
   EF-hand_1  1 elkeiFrefDkDgdGkIdfeEfke 24
                +l++ F e+D D++Gk+d +E+++
  KOO24583.1 60 DLRQRFTELDADRSGKVDMNEYIR 83
                57899****************987 PP

  == domain 3  score: 20.1 bits;  conditional E-value: 2.2e-07
                 HHHHHHHTTTSSSEEEHHHHHHHHHH CS
   EF-hand_1   3 keiFrefDkDgdGkIdfeEfkellkk 28 
                  ++Fr  D Dg+G I+++Ef++++++
  KOO24583.1  98 IDLFRQWDEDGSGVIERKEFRRAIRA 123
                 579********************987 PP

  == domain 4  score: 22.6 bits;  conditional E-value: 3.5e-08
                 HHHHHHHHHTTTSSSEEEHHHHHHHHH CS
   EF-hand_1   1 elkeiFrefDkDgdGkIdfeEfkellk 27 
                 e++ +F++fD D+dG++d++E+ ++l+
  KOO24583.1 134 EIDLVFDDFDIDKDGTLDYNELNTMLR 160
                 68899*******************998 PP

  == domain 5  score: 23.7 bits;  conditional E-value: 1.6e-08
                 HHHHHHHTTTSSSEEEHHHHHHHHHH CS
   EF-hand_1   3 keiFrefDkDgdGkIdfeEfkellkk 28 
                  +iFre D DgdG ++++Ef++++++
  KOO24583.1 229 IDIFREWDEDGDGLVSKKEFRNAVSA 254
                 68********************9986 PP

  == domain 6  score: 20.9 bits;  conditional E-value: 1.3e-07
                 HHHHHHHHHTTTSSSEEEHHHHHHHH CS
   EF-hand_1   1 elkeiFrefDkDgdGkIdfeEfkell 26 
                 +++ +F++fD Dg+G I++ E+k++l
  KOO24583.1 263 DVDAVFSLFDEDGSGMIEYGELKRAL 288
                 5899*******************987 PP

  == domain 7  score: 21.6 bits;  conditional E-value: 7.2e-08
                 HHHHHHTTTSSSEEEHHHHHHHHH CS
   EF-hand_1   4 eiFrefDkDgdGkIdfeEfkellk 27 
                  +F+ +Dk+g+G+I+feE+  l++
  KOO24583.1 380 TLFKSVDKNGSGRITFEELGVLVR 403
                 57*****************98886 PP

  == domain 8  score: 12.5 bits;  conditional E-value: 5.7e-05
                 HHHHHHTTTSSSEEEHHHHHHHHH CS
   EF-hand_1   4 eiFrefDkDgdGkIdfeEfkellk 27 
                  +++++D D +G+Id  E+ ++++
  KOO24583.1 420 ALWKKLDIDATGFIDAGELSRFMR 443
                 689*******************97 PP

>> EF-hand_6  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.4   1.3e-05     0.018       6      28 ..      28      50 ..      26      55 .. 0.91
   2 !   13.7   0.0   3.2e-05     0.044       1      26 [.      60      86 ..      60      91 .. 0.86
   3 !   23.9   0.0   1.8e-08   2.4e-05       2      31 .]      97     125 ..      96     125 .. 0.93
   4 !   21.4   0.7   1.1e-07   0.00016       3      28 ..     136     161 ..     134     174 .. 0.87
   5 !   22.4   0.0   5.4e-08   7.4e-05       2      31 .]     228     256 ..     227     256 .. 0.92
   6 !   18.1   0.3   1.2e-06    0.0017       3      26 ..     265     288 ..     263     292 .. 0.92
   7 !   18.7   0.1   8.3e-07    0.0011       2      30 ..     378     406 ..     377     408 .. 0.87
   8 !   12.7   0.0     7e-05     0.096       2      27 ..     418     443 ..     417     446 .. 0.91

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 1.3e-05
   EF-hand_6  6 FklfDkdgdGkidaeElrkalrk 28
                F + D+d+d+k+d++E+ ++ r+
  KOO24583.1 28 FAAVDVDNDNKLDFDEFCAMVRD 50
                8999***************9984 PP

  == domain 2  score: 13.7 bits;  conditional E-value: 3.2e-05
   EF-hand_6  1 elreaFklfDkdgdGkidaeElrk.al 26
                +lr+ F ++D d++Gk+d++E ++ al
  KOO24583.1 60 DLRQRFTELDADRSGKVDMNEYIRwAL 86
                58999****************877455 PP

  == domain 3  score: 23.9 bits;  conditional E-value: 1.8e-08
   EF-hand_6   2 lreaFklfDkdgdGkidaeElrkalrkalg 31 
                 + ++F+++D dg+G i ++E+r+a+r alg
  KOO24583.1  97 VIDLFRQWDEDGSGVIERKEFRRAIR-ALG 125
                 5799**********************.887 PP

  == domain 4  score: 21.4 bits;  conditional E-value: 1.1e-07
   EF-hand_6   3 reaFklfDkdgdGkidaeElrkalrk 28 
                 + +F+ fD d+dG++d++El  +lr+
  KOO24583.1 136 DLVFDDFDIDKDGTLDYNELNTMLRQ 161
                 568**********************7 PP

  == domain 5  score: 22.4 bits;  conditional E-value: 5.4e-08
   EF-hand_6   2 lreaFklfDkdgdGkidaeElrkalrkalg 31 
                 + ++F+++D dgdG ++++E+r+a + alg
  KOO24583.1 228 VIDIFREWDEDGDGLVSKKEFRNAVS-ALG 256
                 579*********************99.776 PP

  == domain 6  score: 18.1 bits;  conditional E-value: 1.2e-06
   EF-hand_6   3 reaFklfDkdgdGkidaeElrkal 26 
                 +++F lfD dg+G i + El++al
  KOO24583.1 265 DAVFSLFDEDGSGMIEYGELKRAL 288
                 689*******************99 PP

  == domain 7  score: 18.7 bits;  conditional E-value: 8.3e-07
   EF-hand_6   2 lreaFklfDkdgdGkidaeElrkalrkal 30 
                 +  +Fk  Dk+g+G i++eEl  + r++l
  KOO24583.1 378 FFTLFKSVDKNGSGRITFEELGVLVRQKL 406
                 6789*****************98888755 PP

  == domain 8  score: 12.7 bits;  conditional E-value: 7e-05
   EF-hand_6   2 lreaFklfDkdgdGkidaeElrkalr 27 
                 l +++k++D d +G+ida El +++r
  KOO24583.1 418 LLALWKKLDIDATGFIDAGELSRFMR 443
                 56799******************999 PP

>> EF-hand_7  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.7   3.8   1.1e-10   1.5e-07       8      69 ..      28      84 ..      24      86 .. 0.91
   2 !   36.6   3.3   3.2e-12   4.5e-09       5      70 ..      98     159 ..      94     160 .. 0.85
   3 !   16.7   0.0   5.5e-06    0.0076      37      70 ..     217     252 ..     188     253 .. 0.81
   4 !   15.4   0.0   1.4e-05     0.019       3      31 ..     263     291 ..     261     323 .. 0.78
   5 !   17.7   0.1   2.6e-06    0.0036      17      66 ..     350     398 ..     349     403 .. 0.81
   6 !   31.3   0.1   1.5e-10   2.1e-07       4      71 .]     378     443 ..     375     443 .. 0.90
   7 !   13.1   0.0     7e-05     0.097       3      40 ..     417     451 ..     415     467 .. 0.79

  Alignments for each domain:
  == domain 1  score: 31.7 bits;  conditional E-value: 1.1e-10
   EF-hand_7  8 FkelDtdgdgyldkeellrllrkifqgagegsklsdeelellfkefDtdkdGvisfdEFlkl 69
                F + D+d+d++ld +e+  ++r      +e+ + +de l++ f e+D d++G+++++E+ ++
  KOO24583.1 28 FAAVDVDNDNKLDFDEFCAMVRD-----REEGEHTDEDLRQRFTELDADRSGKVDMNEYIRW 84
                999***************99997.....666666999**********************987 PP

  == domain 2  score: 36.6 bits;  conditional E-value: 3.2e-12
   EF-hand_7   5 keaFkelDtdgdgyldkeellrllrkifqgagegsklsd..eelellfkefDtdkdGvisfdEFlkly 70 
                  + F++ D dg+g +++ e++r++r+       g+++     e++l+f++fD dkdG+++++E+ ++ 
  KOO24583.1  98 IDLFRQWDEDGSGVIERKEFRRAIRA------LGFDFIHdvSEIDLVFDDFDIDKDGTLDYNELNTML 159
                 578**********************5......55555553367********************99876 PP

  == domain 3  score: 16.7 bits;  conditional E-value: 5.5e-06
   EF-hand_7  37 egsklsdeele..llfkefDtdkdGvisfdEFlkly 70 
                  + +l+d +++  ++f+e+D d+dG +s  EF++++
  KOO24583.1 217 LQQVLRDNAVRviDIFREWDEDGDGLVSKKEFRNAV 252
                 45566666644449******************9986 PP

  == domain 4  score: 15.4 bits;  conditional E-value: 1.4e-05
   EF-hand_7   3 klkeaFkelDtdgdgyldkeellrllrki 31 
                 ++  +F ++D dg+g++++ el+r+l + 
  KOO24583.1 263 DVDAVFSLFDEDGSGMIEYGELKRALDIE 291
                 56678*******************99853 PP

  == domain 5  score: 17.7 bits;  conditional E-value: 2.6e-06
   EF-hand_7  17 gyldkeellrllrkifqgagegsklsdeelellfkefDtdkdGvisfdEF 66 
                 g l++e++ ++ +k++++   g++++  +  +lfk +D++++G+i+f+E+
  KOO24583.1 350 GELSEEDVVSMSKKLYDA-LKGVDPDLRHFFTLFKSVDKNGSGRITFEEL 398
                 568999999999999998.555554555699999999***********96 PP

  == domain 6  score: 31.3 bits;  conditional E-value: 1.5e-10
   EF-hand_7   4 lkeaFkelDtdgdgyldkeellrllrkifqgagegsklsdeelellfkefDtdkdGvisfdEFlklyr 71 
                  ++ Fk+ D++g+g+++ eel  l+r+ + g  ++++ls+++l +l+k++D d  G i+  E+ +++r
  KOO24583.1 378 FFTLFKSVDKNGSGRITFEELGVLVRQ-KLG-LREKHLSQTQLLALWKKLDIDATGFIDAGELSRFMR 443
                 5789******************77775.455.9**************************999999986 PP

  == domain 7  score: 13.1 bits;  conditional E-value: 7e-05
   EF-hand_7   3 klkeaFkelDtdgdgyldkeellrllrkifqgagegsk 40 
                 +l   +k+lD d +g++d  el r++r+  q  +e+++
  KOO24583.1 417 QLLALWKKLDIDATGFIDAGELSRFMRI-GQ--REKKP 451
                 778889********************94.44..44444 PP

>> EF-hand_5  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   0.4   1.1e-05     0.016       2      21 ..      26      44 ..      25      48 .. 0.92
   2 !   12.3   0.0   6.6e-05     0.091       3      21 ..      63      81 ..      61      85 .. 0.86
   3 !   16.1   0.1     4e-06    0.0056       2      23 ..      98     119 ..      97     121 .. 0.92
   4 !   16.5   1.8   3.1e-06    0.0043       3      24 ..     137     158 ..     135     159 .. 0.89
   5 !   15.3   0.2   7.5e-06      0.01       3      23 ..     230     250 ..     228     253 .. 0.89
   6 !   13.9   0.1     2e-05     0.027       2      23 ..     265     286 ..     264     288 .. 0.90
   7 !   21.5   0.0   8.3e-08   0.00011       4      24 ..     381     401 ..     380     402 .. 0.90
   8 ?    3.2   0.1     0.048        66       7      25 .]     424     442 ..     423     442 .. 0.86

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 1.1e-05
                HHHHHHH-SS-SSCE-HHHH CS
   EF-hand_5  2 kdtFqaiDlNgDGkIskeEL 21
                +d F a+D+++D k++++E+
  KOO24583.1 26 QD-FAAVDVDNDNKLDFDEF 44
                68.****************9 PP

  == domain 2  score: 12.3 bits;  conditional E-value: 6.6e-05
                HHHHHH-SS-SSCE-HHHH CS
   EF-hand_5  3 dtFqaiDlNgDGkIskeEL 21
                + F ++D++++Gk+++ E 
  KOO24583.1 63 QRFTELDADRSGKVDMNEY 81
                56999************96 PP

  == domain 3  score: 16.1 bits;  conditional E-value: 4e-06
                 HHHHHHH-SS-SSCE-HHHHHH CS
   EF-hand_5   2 kdtFqaiDlNgDGkIskeELkt 23 
                  d+F++ D +g+G I + E+++
  KOO24583.1  98 IDLFRQWDEDGSGVIERKEFRR 119
                 589*****************97 PP

  == domain 4  score: 16.5 bits;  conditional E-value: 3.1e-06
                 HHHHHH-SS-SSCE-HHHHHHH CS
   EF-hand_5   3 dtFqaiDlNgDGkIskeELktl 24 
                  +F+ +D ++DG+++  EL t+
  KOO24583.1 137 LVFDDFDIDKDGTLDYNELNTM 158
                 49*****************997 PP

  == domain 5  score: 15.3 bits;  conditional E-value: 7.5e-06
                 HHHHHH-SS-SSCE-HHHHHH CS
   EF-hand_5   3 dtFqaiDlNgDGkIskeELkt 23 
                 d F++ D +gDG +sk E+++
  KOO24583.1 230 DIFREWDEDGDGLVSKKEFRN 250
                 789****************97 PP

  == domain 6  score: 13.9 bits;  conditional E-value: 2e-05
                 HHHHHHH-SS-SSCE-HHHHHH CS
   EF-hand_5   2 kdtFqaiDlNgDGkIskeELkt 23 
                 +++F+ +D +g+G I   ELk+
  KOO24583.1 265 DAVFSLFDEDGSGMIEYGELKR 286
                 579*****************98 PP

  == domain 7  score: 21.5 bits;  conditional E-value: 8.3e-08
                 HHHHH-SS-SSCE-HHHHHHH CS
   EF-hand_5   4 tFqaiDlNgDGkIskeELktl 24 
                 +F+ +D+Ng+G+I++eEL  l
  KOO24583.1 381 LFKSVDKNGSGRITFEELGVL 401
                 69****************876 PP

  == domain 8  score: 3.2 bits;  conditional E-value: 0.048
                 HH-SS-SSCE-HHHHHHHH CS
   EF-hand_5   7 aiDlNgDGkIskeELktlv 25 
                 ++D +  G+I++ EL +++
  KOO24583.1 424 KLDIDATGFIDAGELSRFM 442
                 6778888*********997 PP

>> EF-hand_8  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   1.0   5.2e-06    0.0072      33      54 ..      29      50 ..      28      51 .. 0.89
   2 !    7.6   0.0    0.0025       3.4      32      49 ..      65      82 ..      55      87 .. 0.85
   3 !    8.3   0.0    0.0014         2      30      49 ..      99     118 ..      97     122 .. 0.91
   4 !   23.8   2.1   2.2e-08     3e-05       2      49 ..     109     156 ..     108     161 .. 0.85
   5 !   14.9   0.2   1.2e-05     0.017      30      51 ..     230     251 ..     224     253 .. 0.91
   6 !   23.2   0.0   3.2e-08   4.5e-05       8      48 ..     246     284 ..     245     289 .. 0.90
   7 !   10.7   0.0   0.00027      0.37      28      52 ..     378     402 ..     350     405 .. 0.81
   8 ?    2.7   0.0     0.085   1.2e+02       2      18 ..     430     446 ..     429     457 .. 0.81

  Alignments for each domain:
  == domain 1  score: 16.2 bits;  conditional E-value: 5.2e-06
   EF-hand_8 33 refDtdgdGkisfeEFcvller 54
                 ++D d+d+k++f+EFc+++ +
  KOO24583.1 29 AAVDVDNDNKLDFDEFCAMVRD 50
                579****************987 PP

  == domain 2  score: 7.6 bits;  conditional E-value: 0.0025
   EF-hand_8 32 frefDtdgdGkisfeEFc 49
                f e+D d++Gk++ +E++
  KOO24583.1 65 FTELDADRSGKVDMNEYI 82
                99**************97 PP

  == domain 3  score: 8.3 bits;  conditional E-value: 0.0014
   EF-hand_8  30 ilfrefDtdgdGkisfeEFc 49 
                 +lfr  D+dg+G+i  +EF 
  KOO24583.1  99 DLFRQWDEDGSGVIERKEFR 118
                 59*****************6 PP

  == domain 4  score: 23.8 bits;  conditional E-value: 2.2e-08
   EF-hand_8   2 kgkItreelrrilrilglkk..glseeevdilfrefDtdgdGkisfeEFc 49 
                 +g+I r e+rr++r+lg         +e+d +f+ fD+d+dG+++++E  
  KOO24583.1 109 SGVIERKEFRRAIRALG--FdfIHDVSEIDLVFDDFDIDKDGTLDYNELN 156
                 79***********9995..13335899*********************75 PP

  == domain 5  score: 14.9 bits;  conditional E-value: 1.2e-05
   EF-hand_8  30 ilfrefDtdgdGkisfeEFcvl 51 
                 ++fre D+dgdG +s++EF + 
  KOO24583.1 230 DIFREWDEDGDGLVSKKEFRNA 251
                 69*****************875 PP

  == domain 6  score: 23.2 bits;  conditional E-value: 3.2e-08
   EF-hand_8   8 eelrrilrilglkkglseeevdilfrefDtdgdGkisfeEF 48 
                  e+r ++++lg++     e+vd++f++fD+dg+G+i + E 
  KOO24583.1 246 KEFRNAVSALGYQ--APREDVDAVFSLFDEDGSGMIEYGEL 284
                 6999999999***..*********************98776 PP

  == domain 7  score: 10.7 bits;  conditional E-value: 0.00027
   EF-hand_8  28 vdilfrefDtdgdGkisfeEFcvll 52 
                 + +lf+ +D +g+G+i+feE  vl+
  KOO24583.1 378 FFTLFKSVDKNGSGRITFEELGVLV 402
                 679*****************86665 PP

  == domain 8  score: 2.7 bits;  conditional E-value: 0.085
   EF-hand_8   2 kgkItreelrrilrilg 18 
                 +g I+  el+r++ri +
  KOO24583.1 430 TGFIDAGELSRFMRIGQ 446
                 89***********9953 PP

>> EF-hand_4  Cytoskeletal-regulatory complex EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.7   0.5   3.3e-05     0.046      51      70 ..      30      49 ..      17      50 .. 0.86
   2 ?   -2.2   0.0       2.9     4e+03      43      66 ..      59      82 ..      54      87 .. 0.78
   3 !    7.8   0.8    0.0022         3      45      70 ..     135     160 ..     129     175 .. 0.82
   4 ?   -3.8   0.0         9   1.2e+04      29      41 ..     215     227 ..     203     256 .. 0.50
   5 ?   -2.6   0.1       3.8   5.2e+03      41      65 ..     260     284 ..     217     289 .. 0.72
   6 !   10.2   0.0   0.00041      0.57      35      71 ..     408     444 ..     372     446 .. 0.80

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 3.3e-05
   EF-hand_4 51 ladidedgkldfeefciamr 70
                  d+d+d+kldf+efc ++r
  KOO24583.1 30 AVDVDNDNKLDFDEFCAMVR 49
                569*************8876 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 2.9
   EF-hand_4 43 dklekiwdladidedgkldfeefc 66
                + l + ++  d d  gk+d++e++
  KOO24583.1 59 EDLRQRFTELDADRSGKVDMNEYI 82
                556666666799999******986 PP

  == domain 3  score: 7.8 bits;  conditional E-value: 0.0022
   EF-hand_4  45 lekiwdladidedgkldfeefciamr 70 
                 ++ ++d  did+dg+ld++e+  ++r
  KOO24583.1 135 IDLVFDDFDIDKDGTLDYNELNTMLR 160
                 66788999************988877 PP

  == domain 4  score: -3.8 bits;  conditional E-value: 9
   EF-hand_4  29 dkvapvlknskle 41 
                 +++ +vl++  ++
  KOO24583.1 215 QQLQQVLRDNAVR 227
                 3344444444433 PP

  == domain 5  score: -2.6 bits;  conditional E-value: 3.8
   EF-hand_4  41 eedklekiwdladidedgkldfeef 65 
                 + + ++ +++l d d  g++++ e+
  KOO24583.1 260 PREDVDAVFSLFDEDGSGMIEYGEL 284
                 4567788888888888888888775 PP

  == domain 6  score: 10.2 bits;  conditional E-value: 0.00041
   EF-hand_4  35 lknskleedklekiwdladidedgkldfeefciamrl 71 
                 l++ +l++ +l  +w+  did  g +d  e+   mr+
  KOO24583.1 408 LREKHLSQTQLLALWKKLDIDATGFIDAGELSRFMRI 444
                 67889**************************999997 PP

>> IQ  IQ calmodulin-binding motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.1   0.1   1.1e-06    0.0016       2      20 ..     588     606 ..     587     607 .. 0.92

  Alignments for each domain:
  == domain 1  score: 18.1 bits;  conditional E-value: 1.1e-06
                 HHHHHHHHHHHHHHHHHHH CS
          IQ   2 kaaikIQaawRGylaRkry 20 
                 ++a k Qaa RG++aRk+y
  KOO24583.1 588 ESAAKVQAAARGHQARKEY 606
                 6899**************9 PP

>> Caleosin  Caleosin related protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.0       2.1   2.9e+03      86     109 ..      52      75 ..      26      87 .. 0.56
   2 ?    6.0   0.0    0.0076        10      13      39 ..     104     130 ..     100     138 .. 0.91
   3 ?    1.1   0.0      0.25   3.4e+02      95     124 ..     135     164 ..     130     182 .. 0.79
   4 ?    2.5   0.0     0.086   1.2e+02      13      37 ..     235     259 ..     232     268 .. 0.92
   5 ?   -1.8   0.0       1.9   2.6e+03      94     122 ..     377     405 ..     371     422 .. 0.83

  Alignments for each domain:
  == domain 1  score: -2.0 bits;  conditional E-value: 2.1
    Caleosin  86 eeGrfvpqkfeeifskyakekkda 109
                 eeG+++ + + + f++ +++++++
  KOO24583.1  52 EEGEHTDEDLRQRFTELDADRSGK 75 
                 345555555555555555555555 PP

  == domain 2  score: 6.0 bits;  conditional E-value: 0.0076
    Caleosin  13 fDrdkdGiiypldtyrgfralgfnvll 39 
                 +D+d  G+i   +  r++ralgf+++ 
  KOO24583.1 104 WDEDGSGVIERKEFRRAIRALGFDFIH 130
                 ***********************9985 PP

  == domain 3  score: 1.1 bits;  conditional E-value: 0.25
    Caleosin  95 feeifskyakekkdaltlkevlellkgqre 124
                  + +f+ ++ +k+++l ++e++++l++   
  KOO24583.1 135 IDLVFDDFDIDKDGTLDYNELNTMLRQGAS 164
                 677899999999999999999999987554 PP

  == domain 4  score: 2.5 bits;  conditional E-value: 0.086
    Caleosin  13 fDrdkdGiiypldtyrgfralgfnv 37 
                 +D+d dG++   +  +++ alg+++
  KOO24583.1 235 WDEDGDGLVSKKEFRNAVSALGYQA 259
                 9********************9975 PP

  == domain 5  score: -1.8 bits;  conditional E-value: 1.9
    Caleosin  94 kfeeifskyakekkdaltlkevlellkgq 122
                 +f  +f+  +k+ ++ +t++e+  l++++
  KOO24583.1 377 HFFTLFKSVDKNGSGRITFEELGVLVRQK 405
                 57788999999999999999988877765 PP

>> Milton  Kinesin associated protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.4   3.3e-05     0.045      62     125 ..     542     607 ..     462     648 .. 0.73

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 3.3e-05
      Milton  62 d...sgeeepkkaGvPGapGakdLeaALrrLslrrenylserrffevereRkllalaagtysydeee 125
                 d    g e +++aG PGap  ++L  AL++  +r  +  + +  +e e   k++a a g +   e e
  KOO24583.1 542 DgllVGGEDDEQAGWPGAPPRQELTNALQQRRER-VQMQAKQAHLEKESAAKVQAAARGHQARKEYE 607
                 246645568899*****************98888.6677888999***9999999998877766655 PP

>> DUF357  Protein of unknown function (DUF357)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.2   0.0      0.77   1.1e+03      24      56 ..      91     123 ..      86     126 .. 0.84
   2 ?   10.8   0.0    0.0003      0.41      13      59 ..     211     257 ..     206     258 .. 0.92

  Alignments for each domain:
  == domain 1  score: -0.2 bits;  conditional E-value: 0.77
                 -HHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHH CS
      DUF357  24 geaaeevlemaesYleDakyflekgdlvnAlas 56 
                  +   +v+++ +++ eD+   +e++++ +A+ +
  KOO24583.1  91 ARSSARVIDLFRQWDEDGSGVIERKEFRRAIRA 123
                 55668899******************9999766 PP

  == domain 2  score: 10.8 bits;  conditional E-value: 0.0003
                 HH.....TS---HHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHH CS
      DUF357  13 vkiapdeesplgeaaeevlemaesYleDakyflekgdlvnAlasfsY 59 
                 ++++++ ++ l+++a +v+++ + + eD+   ++k+++ nA++++ Y
  KOO24583.1 211 LSVQQQLQQVLRDNAVRVIDIFREWDEDGDGLVSKKEFRNAVSALGY 257
                 66778888999*********************************999 PP

>> EF-hand_9  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.8   0.1      0.22   3.1e+02      47      65 ..      34      51 ..      26      51 .. 0.81
   2 ?    1.2   0.0      0.35   4.8e+02       4      63 ..      65     122 ..      63     124 .. 0.76
   3 ?    4.4   0.0     0.035        48       2      29 ..     137     164 ..     136     171 .. 0.90
   4 ?    1.6   0.0      0.25   3.4e+02       1      25 [.     265     289 ..     265     303 .. 0.79

  Alignments for each domain:
  == domain 1  score: 1.8 bits;  conditional E-value: 0.22
   EF-hand_9 47 dgedasvdldtflrvmrew 65
                d+ d+++d+d f++++r++
  KOO24583.1 34 DN-DNKLDFDEFCAMVRDR 51
                44.488*********9985 PP

  == domain 2  score: 1.2 bits;  conditional E-value: 0.35
   EF-hand_9   4 FevcDtqktGrVpvsrlidy.LravtaqdpeeseLeelakelDPdgedasvdldtflrvmr 63 
                 F   D ++ G+V + + i   Lr  +  + + +++ +l ++ D dg  + ++   f r +r
  KOO24583.1  65 FTELDADRSGKVDMNEYIRWaLRD-AL-ARSSARVIDLFRQWDEDGS-GVIERKEFRRAIR 122
                 66789999****999988762554.44.4566788999999999998.8888888888776 PP

  == domain 3  score: 4.4 bits;  conditional E-value: 0.035
   EF-hand_9   2 tvFevcDtqktGrVpvsrlidyLravta 29 
                  vF+ +D++k G+    +l ++Lr+ ++
  KOO24583.1 137 LVFDDFDIDKDGTLDYNELNTMLRQGAS 164
                 5899********************9875 PP

  == domain 4  score: 1.6 bits;  conditional E-value: 0.25
   EF-hand_9   1 etvFevcDtqktGrVpvsrlidyLr 25 
                 ++vF+++D +  G +   +l+  L 
  KOO24583.1 265 DAVFSLFDEDGSGMIEYGELKRALD 289
                 689***********99888877665 PP

>> Methyltransf_24  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.9   0.00016      0.23      34     106 .]      73     170 ..      29     170 .. 0.63

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 0.00016
  Methyltransf_24  34 g..........aeeaaalare.aglddrvrlikadseealasla...............agsiDllfiDgghaaeavledleallprlapggvv 101
                                 ++  +alar+ a + d +r++ +d + ++++ +                ++iDl+f D++ +++ +l+ ++ l  +l++g+ v
       KOO24583.1  73 SgkvdmneyirWALRDALARSsARVIDLFRQWDEDGSGVIERKEfrrairalgfdfihdVSEIDLVFDDFDIDKDGTLD-YNELNTMLRQGASV 165
                      34444444444333444555455555566666555533333222223333444555565568*********99999987.99************ PP

  Methyltransf_24 102 lfdDi 106
                      ++dD+
       KOO24583.1 166 ILDDA 170
                      ****5 PP

>> SPARC_Ca_bdg  Secreted protein acidic and rich in cysteine Ca binding region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.2   1.1    0.0088        12      55     111 ..      23      82 ..       5      84 .. 0.76
   2 ?    3.5   0.0     0.063        87      50     111 ..      55     118 ..      48     120 .. 0.84
   3 ?    4.5   0.2     0.031        43      55      79 ..     134     158 ..     127     163 .. 0.88
   4 ?    2.6   0.0      0.12   1.6e+02      50      78 ..     222     250 ..     183     260 .. 0.73
   5 ?   -2.6   0.0       4.9   6.8e+03      92     110 ..     380     398 ..     375     401 .. 0.80
   6 ?   -1.9   0.0         3   4.1e+03      56      78 ..     418     440 ..     403     446 .. 0.78
   7 ?   -3.3   0.4       8.3   1.1e+04      31      52 ..     588     609 ..     564     619 .. 0.41

  Alignments for each domain:
  == domain 1  score: 6.2 bits;  conditional E-value: 0.0088
  SPARC_Ca_bdg  55 pvawkFsklDtnsdkvlsksELaplraplvklehC...ikpflescDadkdkkislkEwc 111
                     a  F  +D+++d+ l+  E  ++  +  + eh     ++ +++ Dad+ +k++++E++
    KOO24583.1  23 RKAQDFAAVDVDNDNKLDFDEFCAMVRDREEGEHTdedLRQRFTELDADRSGKVDMNEYI 82 
                   4455899***************999888887777622245669999***********996 PP

  == domain 2  score: 3.5 bits;  conditional E-value: 0.063
  SPARC_Ca_bdg  50 keckepvawkFsklDtnsdkvlsksELa..plraplvklehCikpflescDadkdkkislkEwc 111
                   +++ e ++ +F++lD ++ + ++ +E    +lr  l +    +  ++++ D d  + i++kE+ 
    KOO24583.1  55 EHTDEDLRQRFTELDADRSGKVDMNEYIrwALRDALARSSARVIDLFRQWDEDGSGVIERKEFR 118
                   5667778889*******999999999863369999999999999999999*9999999999985 PP

  == domain 3  score: 4.5 bits;  conditional E-value: 0.031
  SPARC_Ca_bdg  55 pvawkFsklDtnsdkvlsksELapl 79 
                   ++   F+++D ++d++l+ +EL+ +
    KOO24583.1 134 EIDLVFDDFDIDKDGTLDYNELNTM 158
                   67788*****************987 PP

  == domain 4  score: 2.6 bits;  conditional E-value: 0.12
  SPARC_Ca_bdg  50 keckepvawkFsklDtnsdkvlsksELap 78 
                   +     v   F ++D + d+++sk+E ++
    KOO24583.1 222 RDNAVRVIDIFREWDEDGDGLVSKKEFRN 250
                   44444455568899999999999998765 PP

  == domain 5  score: -2.6 bits;  conditional E-value: 4.9
  SPARC_Ca_bdg  92 pflescDadkdkkislkEw 110
                   ++++s D +  ++i+ +E 
    KOO24583.1 380 TLFKSVDKNGSGRITFEEL 398
                   5788899999999988885 PP

  == domain 6  score: -1.9 bits;  conditional E-value: 3
  SPARC_Ca_bdg  56 vawkFsklDtnsdkvlsksELap 78 
                   +   ++klD +  ++++  EL+ 
    KOO24583.1 418 LLALWKKLDIDATGFIDAGELSR 440
                   4456899****999*99999986 PP

  == domain 7  score: -3.3 bits;  conditional E-value: 8.3
  SPARC_Ca_bdg  31 eeekehleelekkeeeknlkec 52 
                   e+  + +++ + ++ +k++++ 
    KOO24583.1 588 ESAAKVQAAARGHQARKEYEAR 609
                   1111233333444444455555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1016 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1057  (0.0589548); expected 358.6 (0.02)
Passed bias filter:                      580  (0.0323498); expected 358.6 (0.02)
Passed Vit filter:                        51  (0.00284455); expected 17.9 (0.001)
Passed Fwd filter:                        15  (0.000836633); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 0.79u 0.30s 00:00:01.09 Elapsed: 00:00:00.43
# Mc/sec: 7103.69
//
Query:       KOO24584.1  [L=370]
Description: hypothetical protein Ctob_007017 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.021   15.4   0.1      0.037   14.6   0.1    1.4  1  PrmC_N    PrmC N-terminal domain


Domain annotation for each model (and alignments):
>> PrmC_N  PrmC N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.6   0.1   2.1e-06     0.037       2      57 ..     214     268 ..     213     280 .. 0.93

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 2.1e-06
      PrmC_N   2 aLreaearLkaagieeaeldAelLlahvlglsrsdlllrgerelteeqlerfeeli 57 
                 aLr+   +L+aa i +a+   +lL+  v+ +s + l l+++ +++ + ++r++el 
  KOO24584.1 214 ALRRFLTALRAA-IGTARGQPRLLWLTVTAVSDAKLPLWKRPRMSTALARRYNELA 268
                 78999999****.*****************************************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (370 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       219  (0.0122148); expected 358.6 (0.02)
Passed bias filter:                      190  (0.0105974); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.25s 00:00:00.68 Elapsed: 00:00:00.41
# Mc/sec: 2677.34
//
Query:       KOO24585.1  [L=560]
Description: amine oxidase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
      1e-31  110.7   0.5    7.4e-30  104.6   0.2    2.3  2  Amino_oxidase  Flavin containing amine oxidoreductase
  ------ inclusion threshold ------
      0.053   13.4   0.2       0.14   12.1   0.2    1.7  1  Tudor-knot     RNA binding activity-knot of a chromodomain
       0.14   11.8   0.0       0.26   10.9   0.0    1.4  1  Tudor_4        Histone methyltransferase Tudor domain


Domain annotation for each model (and alignments):
>> Amino_oxidase  Flavin containing amine oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    3.9   0.0    0.0046        27      40     102 ..      71     135 ..      62     159 .. 0.81
   2 !  104.6   0.2   1.2e-33   7.4e-30     339     447 ..     227     336 ..     193     338 .. 0.92

  Alignments for each domain:
  == domain 1  score: 3.9 bits;  conditional E-value: 0.0046
                    EESS--EEET...TTHHHHHHHHHTTCCCCEE...EESCCGCEEEEETTEECCTTEECHH.HHHHHHHHH CS
  Amino_oxidase  40 ielGamwftg...agnpllellkelgledsls...lpdpgapkrvlskggrefpgdlspv.paewealle 102
                    +elGa ++ g   +gnpl +l+ ++g++ +     +p+++       +gg   p+d     ++++++lle
     KOO24585.1  71 VELGAAVLMGdvrGGNPLARLCSKYGVPMHKLdghCPLHD-----AANGGALLPEDADTQaEKLFNRLLE 135
                    8***************************888777777777.....3345666688887776666888888 PP

  == domain 2  score: 104.6 bits;  conditional E-value: 1.2e-33
                    E..EEEEEECHHHHHHHTTS-HHHHHHHHHHHHHHHHTGTSSTCSEEEEEECCTETTTSSSEEE.BTTHHHHHHHHHHCHHCSTTEEE.SGGGCTT CS
  Amino_oxidase 339 l..vllvyvggdaaneleslsdeelvqavlrdLrklfgeevpepkatlvtrWhtdplargsysyvsvgpghedydplakpegdprlffAGehtsre 432
                    l  vll++ +g aa ele  +de + + +l+ Lr++fg++vp p +t+vtrW++d++argsysyv+vg++++dy  l +p    rl+fAGeht++e
     KOO24585.1 227 LeqVLLALAAGAAAVELEESDDETITESALEALRSMFGSSVPPPTRTVVTRWGADKFARGSYSYVHVGASGQDYATLGEP-VGERLYFAGEHTIME 321
                    2558****************************************************************************.999************ PP

                    TTTSHHHHHHHHHHH CS
  Amino_oxidase 433 ypgtvegAilSGlra 447
                    +p+tv gA+lSG ra
     KOO24585.1 322 HPATVVGAYLSGVRA 336
                    *************98 PP

>> Tudor-knot  RNA binding activity-knot of a chromodomain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.2   2.3e-05      0.14       2      46 ..     161     205 ..     160     214 .. 0.85

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 2.3e-05
                 -TTTEEEEEETTSCEEEEEEEEEEE.TSSCEEEEEEETTS-CCC-E CS
  Tudor-knot   2 evgckvlvrkkdgelrkAeilsire.kkgkyeYYVHYeefNkRlDe 46 
                 +vg+ + ++  dg+++ ++++ +   +    e   HY ++ k +De
  KOO24585.1 161 VVGTALECEF-DGKWYTGRVVAVEHpDTRAAEVLFHYNGWSKKYDE 205
                 5788888888.************9977777999**********986 PP

>> Tudor_4  Histone methyltransferase Tudor domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   4.3e-05      0.26       4      24 ..     163     183 ..     161     199 .. 0.82

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 4.3e-05
     Tudor_4   4 gqtvktelnGkWlkarvlkVD 24 
                 g  ++ e++GkW++ rv+ V 
  KOO24585.1 163 GTALECEFDGKWYTGRVVAVE 183
                 567899************994 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (560 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       434  (0.0242066); expected 358.6 (0.02)
Passed bias filter:                      256  (0.0142785); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.50u 0.26s 00:00:00.76 Elapsed: 00:00:00.41
# Mc/sec: 4114.51
//
Query:       KOO24586.1  [L=78]
Description: hypothetical protein Ctob_007014 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (78 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       150  (0.00836633); expected 358.6 (0.02)
Passed bias filter:                      108  (0.00602376); expected 358.6 (0.02)
Passed Vit filter:                         3  (0.000167327); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.21s 00:00:00.56 Elapsed: 00:00:00.38
# Mc/sec: 615.45
//
Query:       KOO24587.1  [L=454]
Description: hypothetical protein Ctob_007015 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    7.3e-14   52.1   0.0    1.1e-13   51.6   0.0    1.2  1  DENN      DENN (AEX-3) domain
  ------ inclusion threshold ------
      0.034   14.9   0.0      0.063   14.0   0.0    1.4  1  uDENN     uDENN domain


Domain annotation for each model (and alignments):
>> DENN  DENN (AEX-3) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.6   0.0   1.2e-17   1.1e-13      82     185 ..     161     271 ..     131     272 .. 0.86

  Alignments for each domain:
  == domain 1  score: 51.6 bits;  conditional E-value: 1.2e-17
        DENN  82 edvdlkelfrcLsienilqlfeavLlErriillSeklarLtsvaealvallyPlkWqhiyiPvlpaslld...vl..eaPtPfiiGvesslle..leek 173
                 +++ l +l r+L++  +l+ + a+L+E+r++l+ +++ +L  +aeal++ l Pl + +  +P+lp  l     +l  ea  P+i+G++  + +    e 
  KOO24587.1 161 RESALATLCRTLRPTGLLNALLALLSEERVLLVGSDPLVLFRAAEALASALAPLDFCGALVPILPDGLHPeapTLlnEAVEPYIVGLHTVHHAklKAEL 259
                 678899************************************************************997422222357778*******99988755677 PP

        DENN 174 pledvvlvDldk 185
                 + ++++ +Dld+
  KOO24587.1 260 DDDEILTIDLDT 271
                 888999*****8 PP

>> uDENN  uDENN domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.0   7.1e-06     0.063      20      64 ..      42      76 ..      31      77 .. 0.86

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 7.1e-06
       uDENN 20 vplFcfPeglewsssteksserpepefFsFvLTdedgsrvYGaCl 64
                +plFc P  l w           +p+ + F  T  +g+r++G+++
  KOO24587.1 42 LPLFCWPPAL-WLE---------RPTPHAFATTTNSGTRRFGFAI 76
                89******98.555.........5788***************985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (454 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       429  (0.0239277); expected 358.6 (0.02)
Passed bias filter:                      286  (0.0159518); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.45u 0.23s 00:00:00.68 Elapsed: 00:00:00.38
# Mc/sec: 3587.51
//
Query:       KOO24588.1  [L=181]
Description: hypothetical protein Ctob_007016 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.011   15.9   0.0      0.017   15.3   0.0    1.2  1  RPN13_C   UCH-binding domain
       0.12   11.1   0.0       0.17   10.7   0.0    1.1  1  DUF3443   Protein of unknown function (DUF3443)


Domain annotation for each model (and alignments):
>> RPN13_C  UCH-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.3   0.0   1.9e-06     0.017      36      84 ..      27      74 ..      13      80 .. 0.86

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 1.9e-06
     RPN13_C 36 dpevveeLashLPeegeateeelretlrSPqfrqalsslsqALqsgqlg 84
                +  v ++L ++ Pe ++  ++ + +++  Pqf+++l++  +AL + + +
  KOO24588.1 27 ERTVKKNLGEFVPE-TQTLPDGVTKMMDFPQFKRSLETAGNALTEQEAM 74
                5667899*******.99999***********************876654 PP

>> DUF3443  Protein of unknown function (DUF3443)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   1.8e-05      0.17     131     178 ..     133     180 ..     124     181 .] 0.88

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 1.8e-05
     DUF3443 131 lekaatvadlganGilGiglateDcgaacaqsaanslYyaCtsssCts 178
                   + ++ ++lg  Gi G g  ++D g+++a+ a+++  y  +++ Ct 
  KOO24588.1 133 GGNLSNRSSLGQGGIFGGGAYEADAGGKAAARAQPPPVYVSAAGRCTG 180
                 45668999**************************99999999999985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (181 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       300  (0.0167327); expected 358.6 (0.02)
Passed bias filter:                      251  (0.0139997); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.38u 0.26s 00:00:00.64 Elapsed: 00:00:00.41
# Mc/sec: 1320.52
//
Query:       KOO24589.1  [L=43]
Description: hypothetical protein Ctob_007011 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (43 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       238  (0.0132746); expected 358.6 (0.02)
Passed bias filter:                      144  (0.00803168); expected 358.6 (0.02)
Passed Vit filter:                         4  (0.000223102); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.25s 00:00:00.59 Elapsed: 00:00:00.41
# Mc/sec: 316.17
//
Query:       KOO24590.1  [L=457]
Description: hypothetical protein Ctob_007013 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    9.6e-54  181.7   0.7    1.5e-53  181.1   0.7    1.3  1  RPN7      26S proteasome subunit RPN7
    4.8e-15   56.0   0.6    1.5e-14   54.4   0.1    2.0  2  PCI       PCI domain
     0.0039   17.2   1.6        0.1   12.8   0.2    2.9  2  TPR_2     Tetratricopeptide repeat
  ------ inclusion threshold ------
      0.026   14.4   0.9      0.058   13.2   0.1    2.1  2  TPR_1     Tetratricopeptide repeat
      0.055   12.9   1.1       0.14   11.6   1.2    1.6  1  SNAP      Soluble NSF attachment protein, SNAP
      0.066   12.9   0.6       0.14   11.9   0.1    1.8  2  TPR_11    TPR repeat


Domain annotation for each model (and alignments):
>> RPN7  26S proteasome subunit RPN7
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  181.1   0.7   4.9e-57   1.5e-53       1     174 []      88     263 ..      88     263 .. 0.99

  Alignments for each domain:
  == domain 1  score: 181.1 bits;  conditional E-value: 4.9e-57
                 -HHHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHCT-HHHHHHHHHTCCCC--SHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHH CS
        RPN7   1 DekwveelrkknekeleeLdaelkdakenlgkeeirrakldlaehYlkigdleeAlkaysrireyctslkhkidmllnlirvaiffndwdlvskyleka 99 
                 D +wve++++k++++le+L+++l+++k+ l+ke+ir ++++l+++Y++ g+++ Alk+y r+r+yct++kh+i m++n++r +i+++++ +v +y+ ka
  KOO24590.1  88 DSAWVEQVDRKAAQRLEKLESDLNQHKTSLVKESIRFGHNELGDFYYERGEFNTALKCYVRTRDYCTTSKHIIAMCVNVVRASIAMGNFTHVANYVTKA 186
                 899************************************************************************************************ PP

                 HCSSS---.HHHHHHHHHHHHHHHHHTT-HHHHHHHHCTS-GGGT...TTT--HHHHHHHHHHHHHHH--HHHHHHH CS
        RPN7 100 kellekggdwerknrlkvyeGlallairkfkeAaellldilstfts..kellsyedlavyavlcalatldRkdLkak 174
                 +++ ++  d     +l+ ++Gl +l+ +k+k+Aa+++l+i ++++    e+ s +d+a+y++lcala++dR+dL++k
  KOO24590.1 187 ESTPDSVSDAALASQLRLASGLSCLEGKKYKQAARKFLEISADHAPsyAEIASAQDVALYGGLCALASFDRADLRTK 263
                 ********************************************7799**************************986 PP

>> PCI  PCI domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.0      0.94   2.8e+03      18      37 ..      67      86 ..      50     123 .. 0.52
   2 !   54.4   0.1     5e-18   1.5e-14       2     102 ..     279     379 ..     278     381 .. 0.96

  Alignments for each domain:
  == domain 1  score: -1.2 bits;  conditional E-value: 0.94
                HHHHHHHHHHHHHHHTTHHH CS
         PCI 18 fseelkdleeelladdglaq 37
                  +el + +e l+add + +
  KOO24590.1 67 LFQELVQISESLCADDSVVP 86
                33344444466666655544 PP

  == domain 2  score: 54.4 bits;  conditional E-value: 5e-18
                 HHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHCESEEEHHHHHHHHTSSHHHHHHHHHHHHHTTSSSEEEETTTTE CS
         PCI   2 sysdllkalrsgnlsgfseelkdleeelladdglaqllesLekkvrerllrqvskiyssislerlaklldlsvdevEkilvklIrdgeirakidqesgi 100
                 ++++ l ++  ++++++  +l +l+ +ll d +l++++e+L+  +r ++l q++ ++ ++++  +a+++++ v+ +E+ l+klI  g+i+a+id+++++
  KOO24590.1 279 QVREALHDFFHSRYASCLALLDKLKPDLLLDLHLHDHVEQLYTDIRSKALVQYFSPFVTVDMRLMASAFNVGVEGLEQELAKLIMAGQIKARIDSQAKV 377
                 6788899999999***********************************************************************************999 PP

                 EE CS
         PCI 101 vv 102
                 ++
  KOO24590.1 378 LH 379
                 85 PP

>> TPR_2  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.8   0.2   3.3e-05       0.1       3      26 ..     125     148 ..     124     153 .. 0.91
   2 ?    2.0   0.1     0.096   2.9e+02       8      26 ..     207     225 ..     204     228 .. 0.87

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 3.3e-05
       TPR_2   3 alynlGlayyklgdyeeAleafek 26 
                 ++++lG+ yy++g+++ Al+++ +
  KOO24590.1 125 GHNELGDFYYERGEFNTALKCYVR 148
                 699*******************65 PP

  == domain 2  score: 2.0 bits;  conditional E-value: 0.096
       TPR_2   8 GlayyklgdyeeAleafek 26 
                 Gl++++ ++y++A++ f +
  KOO24590.1 207 GLSCLEGKKYKQAARKFLE 225
                 8899999******999976 PP

>> TPR_1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.1   1.9e-05     0.058       4      25 ..     126     147 ..     124     149 .. 0.92
   2 ?   -2.6   0.1       1.9   5.8e+03       8      20 ..     207     219 ..     207     221 .. 0.79

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 1.9e-05
                 HHHHHHHHHHTT-HHHHHHHHH CS
       TPR_1   4 lynlGnayfklgkydeAleyye 25 
                 ++ lG  y++ g+++ Al++y 
  KOO24590.1 126 HNELGDFYYERGEFNTALKCYV 147
                 899******************6 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 1.9
                 HHHHHHTT-HHHH CS
       TPR_1   8 GnayfklgkydeA 20 
                 G+ +++ +ky++A
  KOO24590.1 207 GLSCLEGKKYKQA 219
                 6777888999999 PP

>> SNAP  Soluble NSF attachment protein, SNAP
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   1.2   4.6e-05      0.14     149     219 ..     192     264 ..     131     271 .. 0.75

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 4.6e-05
                 T-HHHHHHHHHHHH.HHHHHTT.-HHHHHHHHHHHHHTTSS-TTTGGGHHHHHHHHHHHHHHTT-HHHHHHHH CS
        SNAP 149 eakalankcllkvA.elsaele.kyekAieiyekvakkslennllkysvkeyflkaglcrLaagDvvaakral 219
                 +++ +a   +l++A  ls+ ++ ky++A+  + ++  + + +     s+++  l  glc+La+ D  + +++l
  KOO24590.1 192 SVSDAALASQLRLAsGLSCLEGkKYKQAARKFLEISADHAPSYAEIASAQDVALYGGLCALASFDRADLRTKL 264
                 33334444555566478999988****************************************9998887766 PP

>> TPR_11  TPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.1   4.6e-05      0.14       1      18 [.     130     147 ..     130     148 .. 0.93
   2 ?   -3.5   0.1       2.9   8.7e+03      16      20 ..     215     219 ..     209     222 .. 0.73

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 4.6e-05
      TPR_11   1 GdayyeqGkyeeAieaYk 18 
                 Gd yye+G+++ A+++Y 
  KOO24590.1 130 GDFYYERGEFNTALKCYV 147
                 899**************5 PP

  == domain 2  score: -3.5 bits;  conditional E-value: 2.9
      TPR_11  16 aYkkA 20 
                 +Yk+A
  KOO24590.1 215 KYKQA 219
                 67777 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (457 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       617  (0.0344135); expected 358.6 (0.02)
Passed bias filter:                      482  (0.0268838); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.51u 0.26s 00:00:00.77 Elapsed: 00:00:00.40
# Mc/sec: 3417.13
//
Query:       KOO24591.1  [L=616]
Description: selenoprotein o [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    9.4e-93  311.5   0.0    1.2e-92  311.2   0.0    1.0  1  UPF0061    Uncharacterized ACR, YdiU/UPF0061 family
  ------ inclusion threshold ------
      0.061   13.8   0.0       0.13   12.7   0.0    1.5  1  DUF5610    Domain of unknown function (DUF5610)
       0.13   12.3   0.2       0.36   10.9   0.2    1.7  1  Phage_Cox  Regulatory phage protein cox


Domain annotation for each model (and alignments):
>> UPF0061  Uncharacterized ACR, YdiU/UPF0061 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  311.2   0.0   1.9e-96   1.2e-92      13     466 ..      80     582 ..      71     584 .. 0.88

  Alignments for each domain:
  == domain 1  score: 311.2 bits;  conditional E-value: 1.9e-96
     UPF0061  13 slgsdfydeveaaefpkkilrvrndalleelgldeeevkdeelieifgke..kgiepflalrYhGyQFGeynpqLGDGRgfllgqvrdkdgelydfglK 109
                  +g+++++  ++ ++++ +l++++ +++++lgl+++e++++ +++ fg+   +++e + a++Y     G+y +q GDGR++  gq+++      + +lK
  KOO24591.1  80 VTGAHYVSVRPTVNASEPTLIIHSAEVAASLGLSADECESDAFLKTFGGApaENVECW-ATAYGASFAGSYGGQRGDGRAISIGQLKN----GLEVQLK 173
                 5789999999999************************************998888999.****99999******************99....6899*** PP

     UPF0061 110 GsGlTPySRsaDGrlvLksgvREvlasealhklgvrtsralslietgekllRe.......dePspersavvvRlarshiRfGtferlkylkrldllkkL 201
                 G+G TP+SR  DGr+vL+s vRE+lasea+++lg++t+ral+++ tgek+ R+       +   +e +av  R+a+s++RfG++e++  +++++ll++L
  KOO24591.1 174 GAGVTPFSRRFDGRAVLRSCVREFLASEAMAALGIPTTRALCVVATGEKVRRSwyddngmERAMMEAGAVGTRVAKSFLRFGQMELFFQRDEMALLREL 272
                 ****************************************************88843333334457899****************************** PP

     UPF0061 202 ldyvieeyypeladee......ekyaqfyaelvervAelvAqWmaaGFchgVlNTDNmsilGeslDYGPyaFldkydpkftaayfDyagrYsyanQpsi 294
                 +++++e  +++l  ++      e + ++++e+  r+A+lvA+W  +G+c+g lN DN ++ G +lDYGP+aF+++++  + +        Ys+a+Qp+ 
  KOO24591.1 273 AEHCLEREFSHLLVQHpteprsELFVRMFDEVAARQASLVAEWLRVGYCQGNLNSDNSALGGVTLDYGPFAFMERFNLLYNPWV-GGGLPYSFAKQPQA 370
                 ************55555666669999******************************************************9965.56679********* PP

     UPF0061 295 ilwNLeqlaeplalli............eaeeleeale.....eykevyttkYaqlmlkkLGleklsekekefdselleellelLqetqvdYneffveL 376
                   +NL  la+++ +l+            ++++l+e+++     ++ +++++++ +  ++kLGl+k + ++    +el + + +   e  +d++ ff++L
  KOO24591.1 371 LATNLVGLAQAFLALVeqgakaegrsekDINALSERVRgavsgTFVDTFNARHDENCRAKLGLSKWDDEADALFTELTQLMGRSTGEAGMDFTLFFRAL 469
                 ***************988888888877766667666669999*********************87777777766666666666667789********** PP

     UPF0061 377 aeskskkwrdeaesileese..kelee..........................ekleeWrelYkklleeleedeleeraerlkkvNpktvllrplieev 447
                  +   + ++ + +     ++  +                              +++++W ++Y+++++      +eer++ ++++Npk++l+++++ e+
  KOO24591.1 470 GTASAEAAAARLSPSAGAAAsgD---AaetalresavgasalqpleqwpsehrDAWRAWLRRYTARVAAD-GRPTEERQAEMRQANPKYILRNSMALEA 564
                 99988887744444322222332...123466779999999999********9***************65.6699************************ PP

     UPF0061 448 iekiaeeddlsplkkllek 466
                 +e+ a++ d+s +++l+  
  KOO24591.1 565 YEA-AAKGDYSVVRELHAV 582
                 ***.9*********99875 PP

>> DUF5610  Domain of unknown function (DUF5610)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   2.2e-05      0.13      36      79 ..     364     411 ..     346     415 .. 0.93

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 2.2e-05
                 ------HHHHHHHHHHHHHHH....HT-TTS-HHHHHHHHHHHHHHHH CS
     DUF5610  36 fdfsPeavAdrilsfvtgrle....sakadgaseeklqslleqarkGv 79 
                 f  +P+a A + ++ ++++l+     aka+g+se+ +++l e +r++v
  KOO24591.1 364 FAKQPQALATNLVGLAQAFLAlveqGAKAEGRSEKDINALSERVRGAV 411
                 4568********************9********************998 PP

>> Phage_Cox  Regulatory phage protein cox
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.2   6.1e-05      0.36      47      86 ..     488     527 ..     483     528 .. 0.88

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 6.1e-05
                 -------EEEEEHHHHHHHHHHHHHHS-HHHHHHGGGGGT CS
   Phage_Cox  47 kaagrrgEyyvvlsewnkglklayesrPkelrdgWlkWlg 86 
                 +a+g ++E  +  s+  + + +  e+ P e rd+W +Wl 
  KOO24591.1 488 AASGDAAETALRESAVGASALQPLEQWPSEHRDAWRAWLR 527
                 578888999999999999999999**************95 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (616 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       460  (0.0256568); expected 358.6 (0.02)
Passed bias filter:                      348  (0.0194099); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.55u 0.28s 00:00:00.83 Elapsed: 00:00:00.44
# Mc/sec: 4224.38
//
Query:       KOO24592.1  [L=409]
Description: ectonucleoside triphosphate diphosphohydrolase 1 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    5.7e-44  150.4   0.0    7.2e-44  150.1   0.0    1.1  1  GDA1_CD39    GDA1/CD39 (nucleoside phosphatase) family
  ------ inclusion threshold ------
        1.7    9.0   5.5        5.2    7.4   3.7    2.3  2  Pelovaterin  Pelovaterin


Domain annotation for each model (and alignments):
>> GDA1_CD39  GDA1/CD39 (nucleoside phosphatase) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  150.1   0.0   8.1e-48   7.2e-44      95     411 ..       1     316 [.       1     326 [. 0.90

  Alignments for each domain:
  == domain 1  score: 150.1 bits;  conditional E-value: 8.1e-48
   GDA1_CD39  95 lRLlkeekkekilkalrnklkklsefkved.qgiriidGeeEGiYgWiaiNYllGkfnkeapevskqetvgvlDlGGaStQiafepqeeseiaekvedi 192
                 +RLl   ++  i +++r+ + +++ f +   + +r + Ge EG++ W+a+  +lG              +g lDlGGaStQi+fep      +   +d 
  KOO24592.1   1 MRLLSASRQRPIWNSVRASVLNHTRFAFLPaEDARTLSGEYEGLFNWMALRHILGDTAPA--------LFGGLDLGGASTQITFEPP---DVGGILQDS 88 
                 9***************************9889***********************86665........7******************...566667777 PP

   GDA1_CD39 193 eelklqekledkkyklyvtsfLgyGanealrkklaklikkasee..............vlkdpClprglektvevkdle....fkqfaikgtgnyeqCr 273
                   ++++ ++   +  +y++s++  G++ea+r+  ++l    +                 + +pC++rg+e+ v+v         ++ +  g gn+++Cr
  KOO24592.1  89 -YYVRDRNEARPDVRVYSHSYMRAGKDEAQRRLFEQLAVAVPALdysslypasmapepRIANPCMNRGYEREVSVGCGGgagaCRTVRFTGLGNWDECR 186
                 .5999**************************98887765555445889*************************9987767777899999********** PP

   GDA1_CD39 274 ksikellnknakCkaeeClfngvfapsidllqklfgaseyfYtvsdvlklggek....vklekltealrkfCkknweeikaeskkskeksiseeeaCfk 368
                 +++++ll+ + +C  ++C++ gv++p+ +  +++f as++f+ v + ++l++ +     +  +++ a r fC ++w+e+ ++++          ++Cf 
  KOO24592.1 187 RLVDSLLHLDYECVLPPCALSGVYQPT-PTGVRFF-ASDFFFYVANGIGLVSWNgrweGSWAEFAAAGRAFCGRRWDEVASKYA-------A--DFCFG 274
                 **************************9.7788777.67777777789999988878778999*****************99875.......3..6**** PP

   GDA1_CD39 369 gayvlslLhdGfdldktveelqsvekiaekelgWtLGamlnll 411
                 +ayv + L+  + ++++   ++ v+++++ ++gWtLGaml  l
  KOO24592.1 275 SAYVPA-LLGAYGIPADSTAVTYVRELEGFDVGWTLGAMLFEL 316
                 ****99.7789****************************9654 PP

>> Pelovaterin  Pelovaterin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.4   3.7   0.00058       5.2      28      40 ..     160     172 ..     158     174 .. 0.92
   2 ?    0.5   0.0     0.082   7.3e+02       9      23 ..     178     192 ..     175     200 .. 0.84

  Alignments for each domain:
  == domain 1  score: 7.4 bits;  conditional E-value: 0.00058
                  B-SSS-TTEEB-B CS
  Pelovaterin  28 vtvGCsGGfGCCr 40 
                  v vGC GG G Cr
   KOO24592.1 160 VSVGCGGGAGACR 172
                  89**********9 PP

  == domain 2  score: 0.5 bits;  conditional E-value: 0.082
                  TTSSB-S-EEGGG-- CS
  Pelovaterin   9 GsGGWGPClPivdll 23 
                  G G W  C  +vd l
   KOO24592.1 178 GLGNWDECRRLVDSL 192
                  7899********966 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (409 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       405  (0.0225891); expected 358.6 (0.02)
Passed bias filter:                      331  (0.0184617); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.48u 0.27s 00:00:00.75 Elapsed: 00:00:00.43
# Mc/sec: 2827.56
//
Query:       KOO24593.1  [L=112]
Description: hypothetical protein Ctob_005261 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (112 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       215  (0.0119917); expected 358.6 (0.02)
Passed bias filter:                      201  (0.0112109); expected 358.6 (0.02)
Passed Vit filter:                        11  (0.000613531); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.26s 00:00:00.62 Elapsed: 00:00:00.41
# Mc/sec: 826.60
//
Query:       KOO24594.1  [L=1886]
Description: morc family cw-type zinc finger protein 1, partial [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    3.3e-15   56.8   0.0    9.8e-15   55.2   0.0    1.8  1  DUF563       Protein of unknown function (DUF563)
    1.7e-09   37.9   0.0    1.7e-05   24.9   0.0    2.4  2  Morc6_S5     Morc6 ribosomal protein S5 domain 2-like
    8.4e-07   28.9   0.0      4e-06   26.7   0.0    2.0  1  HATPase_c_3  Histidine kinase-, DNA gyrase B-, and HSP90-like
    8.7e-05   22.8   0.0        6.4    7.4   0.1    4.2  5  LRR_4        Leucine Rich repeats (2 copies)
     0.0002   21.1   3.0        2.1    8.6   0.2    5.3  6  LRR_6        Leucine Rich repeat


Domain annotation for each model (and alignments):
>> DUF563  Protein of unknown function (DUF563)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.2   0.0   2.7e-18   9.8e-15     114     204 ..     699     796 ..     679     801 .. 0.78

  Alignments for each domain:
  == domain 1  score: 55.2 bits;  conditional E-value: 2.7e-18
      DUF563 114 kagsRrilNeeevlkllp..krgfevvd..peslsfeeqiklfssakvivgphGsgltnliFmppgttvielvppnrldns...fenlaallglkyay 204
                 ++g+R +lNe+ev+++l   + g  v+   p++l++++q++lf+s +v+v+ +Gs+l  ++Fm+p+++v+el++ ++   +   + +l   lgl y +
  KOO24594.1 699 SKGRRALLNEDEVIAALItvSAGTCVFTanPGTLPLAQQVMLFRSMDVLVAASGSALIGMFFMRPRAVVVELLSFQGTSVPdttWHELGISLGLTYKV 796
                 4579**********6666245554444456******************************************76544433344466666666666655 PP

>> Morc6_S5  Morc6 ribosomal protein S5 domain 2-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.4   0.0   0.00014      0.51       2      41 ..    1255    1301 ..    1254    1320 .. 0.73
   2 !   24.9   0.0   4.6e-09   1.7e-05      64     135 ..    1377    1459 ..    1335    1462 .. 0.84

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00014
    Morc6_S5    2 sLrayasiLYlklp.......ekfkiilrgkkvethkiakdlklkek 41  
                  sLray+ +LYl+ p       + +ki+lrg++v+ ++    l   ++
  KOO24594.1 1255 SLRAYCELLYLHAPsatpplvPVLKIVLRGREVRYRNWDAYLCDLRH 1301
                  9**********9762222222579*********99987776665555 PP

  == domain 2  score: 24.9 bits;  conditional E-value: 4.6e-09
    Morc6_S5   64 keakkvdvqGfnvYhknRLikpfwrvvaqa...........sskgrgviGvleanfiePahdkqdFertklyqrlearLkeml 135 
                  k a + +++Gf  Yh+ RLi+  +++v +a           ++ g+g+ G +  n++ P h+k  ++r++l++ l++ +k+  
  KOO24594.1 1377 KRAVTEEQTGFAFYHNGRLIRILEKLVLAAsnsiatstrriTHYGQGLTGYVSENYLAPEHNKAVYKRAELFASLKNAVKRSC 1459
                  66677899**************999876544444444444455699******************************9998765 PP

>> HATPase_c_3  Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.7   0.0   1.1e-09     4e-06       6     101 ..    1004    1133 ..     999    1164 .. 0.72

  Alignments for each domain:
  == domain 1  score: 26.7 bits;  conditional E-value: 1.1e-09
  HATPase_c_3    6 AlaelvdNsldAdaen....................................vkievnknrgktgeivieDdGkGmseeelknal.rlatsskeak 64  
                   A  +l+dN+ +++a+                                     v+  + +   ++ ++v eDdG+Gmse  ++ +l +++++sk+  
   KOO24594.1 1004 AFGDLIDNARESEATMmridirkhprpaearagmggahdgvsrpqasishgtVSGRMRTT-LADLMLVLEDDGHGMSEGIVRMGLgSIGHTSKSL- 1097
                   666888888888888866666666666666666666666666666444444433333343.35699*****************8857***99995. PP

  HATPase_c_3   65 rkstslG.kkGiGlklAslslgkkltvitkkegesstl 101 
                     s   G  +G+G k+A  +l++   ++t++eg   t+
   KOO24594.1 1098 --SGGSGlHYGFGSKTALSKLAEFCLIFTRAEGGHRTV 1133
                   ..4444426***********************665543 PP

>> LRR_4  Leucine Rich repeats (2 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.0   0.0     0.042   1.5e+02      10      39 ..     195     230 ..     193     233 .. 0.72
   2 ?    2.2   0.0     0.076   2.7e+02       1      37 [.     215     258 ..     215     264 .. 0.75
   3 ?    4.7   0.2     0.012        43       5      37 ..     249     288 ..     245     296 .. 0.68
   4 !    7.4   0.1    0.0018       6.4       1      38 [.     275     319 ..     275     324 .. 0.82
   5 !    6.1   0.0    0.0043        15       2      40 ..     336     380 ..     335     383 .. 0.83

  Alignments for each domain:
  == domain 1  score: 3.0 bits;  conditional E-value: 0.042
                 SS---E-S-...HH....H-TT--EEE-.-S-----G CS
       LRR_4  10 nNqltdipl...le....klpnLkeLdLsgNnlitdl 39 
                 +Nq++d ++   l+    ++p+L +L++ +N +it +
  KOO24594.1 195 DNQIRDGGFraiLSaavhSMPKLAKLWVESN-QITAV 230
                 5777776664443367767*********666.99865 PP

  == domain 2  score: 2.2 bits;  conditional E-value: 0.076
                 SS--EEE--SS---E-S-HH.......H.-TT--EEE-.-S---- CS
       LRR_4   1 pnLevLdLsnNqltdiplle.......k.lpnLkeLdLsgNnlit 37 
                 p+L +L+  +Nq+t ++  +       + l +L +L ++ N l+ 
  KOO24594.1 215 PKLAKLWVESNQITAVGVDAmaksiraGaLSKLSHLGINAN-LLA 258
                 67888999999999999944444556766999999999666.665 PP

  == domain 3  score: 4.7 bits;  conditional E-value: 0.012
                 EEE--SS---E-S-..HH.....H.-TT--EEE-.-S---- CS
       LRR_4   5 vLdLsnNqltdipl..le.....k.lpnLkeLdLsgNnlit 37 
                 +L ++ N l d +   l+     + lp+L+ L L +N++it
  KOO24594.1 249 HLGINANLLADAGVvsLAhlsadGfLPKLRLLFL-HNSQIT 288
                 55555456666555552244467779********.998997 PP

  == domain 4  score: 7.4 bits;  conditional E-value: 0.0018
                 SS--EEE--SS---E-S-..HH.....H.-TT--EEE-.-S----- CS
       LRR_4   1 pnLevLdLsnNqltdipl..le.....k.lpnLkeLdLsgNnlitd 38 
                 p+L+ L L+n q+t  ++  l+     + ++ L+eL++ g+nl++d
  KOO24594.1 275 PKLRLLFLHNSQITREGFagLSlacarGaFKVLEELSI-GFNLLGD 319
                 79*******99***999977335678866999******.7779987 PP

  == domain 5  score: 6.1 bits;  conditional E-value: 0.0043
                 S--EEE--SS---E-S-..HH.....H.-TT--EEE-.-S-----GG CS
       LRR_4   2 nLevLdLsnNqltdipl..le.....k.lpnLkeLdLsgNnlitdld 40 
                 +L+ L ++ + + d+++  l+     k lp+L  +dL ++n+i +ld
  KOO24594.1 336 QLRQLFFQRCAIGDVGFqsLAdslgrKaLPKLSAIDL-QMNPI-SLD 380
                 7999*************88446677977*********.88899.665 PP

>> LRR_6  Leucine Rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.0      0.93   3.3e+03      12      22 ..     195     205 ..     194     207 .. 0.80
   2 ?    3.4   0.0     0.027        97       5      24 .]     217     236 ..     213     236 .. 0.81
   3 ?    2.6   0.3     0.049   1.8e+02       3      24 .]     245     266 ..     243     266 .. 0.92
   4 !    8.6   0.2    0.0006       2.1       5      24 .]     307     326 ..     306     326 .. 0.94
   5 ?    1.2   0.0      0.14   5.1e+02       5      24 .]     337     356 ..     334     356 .. 0.80
   6 ?   -2.9   0.0         3   1.1e+04       3      16 ..     365     378 ..     364     379 .. 0.85

  Alignments for each domain:
  == domain 1  score: -1.4 bits;  conditional E-value: 0.93
       LRR_6  12 gNdIgDeGaea 22 
                 +N+I D G  a
  KOO24594.1 195 DNQIRDGGFRA 205
                 8*****99666 PP

  == domain 2  score: 3.4 bits;  conditional E-value: 0.027
       LRR_6   5 LteLdLsgNdIgDeGaeaLa 24 
                 L +L + +N+I+ +G+ a+a
  KOO24594.1 217 LAKLWVESNQITAVGVDAMA 236
                 66666889********9986 PP

  == domain 3  score: 2.6 bits;  conditional E-value: 0.049
       LRR_6   3 thLteLdLsgNdIgDeGaeaLa 24 
                 ++L +L ++ N + D+G+ +La
  KOO24594.1 245 SKLSHLGINANLLADAGVVSLA 266
                 7899****************98 PP

  == domain 4  score: 8.6 bits;  conditional E-value: 0.0006
       LRR_6   5 LteLdLsgNdIgDeGaeaLa 24 
                 L+eL++ +N +gD G+ a++
  KOO24594.1 307 LEELSIGFNLLGDNGILAFS 326
                 89**************9985 PP

  == domain 5  score: 1.2 bits;  conditional E-value: 0.14
       LRR_6   5 LteLdLsgNdIgDeGaeaLa 24 
                 L+ L  + + IgD+G ++La
  KOO24594.1 337 LRQLFFQRCAIGDVGFQSLA 356
                 66666789*******88887 PP

  == domain 6  score: -2.9 bits;  conditional E-value: 3
       LRR_6   3 thLteLdLsgNdIg 16 
                 ++L + dL+ N I+
  KOO24594.1 365 PKLSAIDLQMNPIS 378
                 578899*****996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1886 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       550  (0.0306766); expected 358.6 (0.02)
Passed bias filter:                      332  (0.0185175); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.95u 0.31s 00:00:01.26 Elapsed: 00:00:00.45
# Mc/sec: 12531.67
//
Query:       KOO24595.1  [L=220]
Description: hypothetical protein Ctob_005263 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (220 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       724  (0.0403815); expected 358.6 (0.02)
Passed bias filter:                      393  (0.0219198); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.42u 0.25s 00:00:00.67 Elapsed: 00:00:00.40
# Mc/sec: 1640.83
//
Query:       KOO24596.1  [L=643]
Description: hypothetical protein Ctob_005262 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
     0.0099   16.2   0.8         29    5.1   0.0    4.0  4  Mto2_bdg  Micro-tubular organiser Mto1 C-term Mto2-binding re


Domain annotation for each model (and alignments):
>> Mto2_bdg  Micro-tubular organiser Mto1 C-term Mto2-binding region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    3.8   0.1    0.0041        74      29      43 ..      43      57 ..      39      63 .. 0.91
   2 ?    0.8   0.0     0.034     6e+02      29      51 ..     451     473 ..     447     474 .. 0.86
   3 ?    0.9   0.0     0.032   5.8e+02      28      51 ..     483     506 ..     480     507 .. 0.86
   4 !    5.1   0.0    0.0016        29      27      52 .]     515     540 ..     513     540 .. 0.91

  Alignments for each domain:
  == domain 1  score: 3.8 bits;  conditional E-value: 0.0041
    Mto2_bdg 29 erLeelkaeNrlLka 43
                e+L++l+ +N +Lka
  KOO24596.1 43 EELQQLRVQNVELKA 57
                89************9 PP

  == domain 2  score: 0.8 bits;  conditional E-value: 0.034
    Mto2_bdg  29 erLeelkaeNrlLkaeLerdrsh 51 
                 er+   +a N+ L a L++ +++
  KOO24596.1 451 ERIHAHEAANEPLPADLALWKKR 473
                 89999************998776 PP

  == domain 3  score: 0.9 bits;  conditional E-value: 0.032
    Mto2_bdg  28 rerLeelkaeNrlLkaeLerdrsh 51 
                  er+   +a N+ L a L++ +++
  KOO24596.1 483 WERIHAHEAANEPLPADLALWKKR 506
                 589999************998776 PP

  == domain 4  score: 5.1 bits;  conditional E-value: 0.0016
    Mto2_bdg  27 arerLeelkaeNrlLkaeLerdrshs 52 
                 +rer+   +a N+ L a L++ +++s
  KOO24596.1 515 IRERIHAHEAANEPLPADLALFKERS 540
                 8*******************998875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (643 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       637  (0.035529); expected 358.6 (0.02)
Passed bias filter:                      447  (0.0249317); expected 358.6 (0.02)
Passed Vit filter:                        48  (0.00267723); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.55u 0.26s 00:00:00.81 Elapsed: 00:00:00.42
# Mc/sec: 4632.66
//
Query:       KOO24597.1  [L=305]
Description: xyloside xylosyltransferase 1 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
  ------ inclusion threshold ------
       0.11   12.1   0.0       0.13   11.8   0.0    1.4  1  Glyco_transf_8  Glycosyl transferase family 8


Domain annotation for each model (and alignments):
>> Glyco_transf_8  Glycosyl transferase family 8
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   7.2e-06      0.13      93     175 ..      82     159 ..       4     220 .. 0.76

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 7.2e-06
  Glyco_transf_8  93 Rlylpelf.pkldkilylDaDvvvqgdlseLwd.ldlk..gkvlaavedkrfkkylnksepliaenfkpeacyFnaGvllfdldewr 175
                     +  l  ++ ++l++++ lD D + ++dl  Lw+  d    g++l++  +         + p  +e  +    +Fn Gv l+ l+e r
      KOO24597.1  82 KPLLHLVLpKSLSRVIVLDTDLFLFEDLLGLWReFDRFrqGELLGVAAE---------QCPSYQEVRSLGGLGFNGGVQLLALAEMR 159
                     55555566688*********************62332223566655555.........45555555555556666666666666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (305 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       327  (0.0182386); expected 358.6 (0.02)
Passed bias filter:                      307  (0.0171231); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.28s 00:00:00.75 Elapsed: 00:00:00.45
# Mc/sec: 2039.28
//
Query:       KOO24598.1  [L=76]
Description: hypothetical protein Ctob_010932 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
  ------ inclusion threshold ------
       0.13   12.3   0.8        0.2   11.7   0.2    1.6  2  Orexin_rec2  Orexin receptor type 2


Domain annotation for each model (and alignments):
>> Orexin_rec2  Orexin receptor type 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.2   1.1e-05       0.2       8      36 ..      25      53 ..      20      56 .. 0.87
   2 ?   -2.0   0.0      0.22   3.9e+03      20      26 ..      63      69 ..      54      72 .. 0.69

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 1.1e-05
  Orexin_rec2  8 lvRGraSTESRKSLTTQisnfDnvsklsE 36
                 l R  + TESRK     +s  D +++  E
   KOO24598.1 25 LDRATMGTESRKAVQSSLSALDTAARKKE 53
                 5688899****************998655 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 0.22
  Orexin_rec2 20 SLTTQis 26
                  LTT +s
   KOO24598.1 63 KLTTELS 69
                 3677766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (76 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       699  (0.0389871); expected 358.6 (0.02)
Passed bias filter:                      398  (0.0221987); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.35u 0.26s 00:00:00.61 Elapsed: 00:00:00.41
# Mc/sec: 553.85
//
Query:       KOO24599.1  [L=299]
Description: carbonyl reductase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    6.3e-32  110.6   0.0    7.7e-26   90.8   0.0    2.1  2  adh_short     short chain dehydrogenase
    2.4e-23   82.9   0.0    1.2e-15   57.7   0.0    2.1  2  adh_short_C2  Enoyl-(Acyl carrier protein) reductase
    6.3e-06   26.2   0.1      1e-05   25.5   0.0    1.4  1  KR            KR domain


Domain annotation for each model (and alignments):
>> adh_short  short chain dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   90.8   0.0   1.3e-29   7.7e-26       1     142 [.      21     175 ..      21     182 .. 0.88
   2 !   17.9   0.0   2.7e-07    0.0016     146     188 ..     217     257 ..     205     263 .. 0.87

  Alignments for each domain:
  == domain 1  score: 90.8 bits;  conditional E-value: 1.3e-29
                 SEEEEESTTSHHHHHHHHHHHHT.T-EEEEEESCHHHHHHHHHHHHHT......TSEEEEEE-TTTSHHHHHHHHHHHHHHHSSESEEEE---S..... CS
   adh_short   1 kvvlvtGassGIGraiakelake.Gakvvvvdrseekleevakelkee......gakalaiqvDvtdreevealvekavkklgkldvLvnNAGi..... 87 
                 kv+l+tG  +GIG++ia++la+  +++v++  r+ e  +++akel ++      +a++ + ++D++d + +ea+ +++++++g+ldvLvnNA+i     
  KOO24599.1  21 KVALITGSNKGIGKEIARKLAATpDMTVILGCRNLELGAAAAKELAACawpppkQADVAVQRIDLADLATIEAARDAIASEYGRLDVLVNNAAIcfndp 119
                 89******************876367888899999************999987667799999********************************99887 PP

                 S--SSGGGCSHHH.HHHHHHHHTHHHHHHHHHHHHHHHHCTTEEEEEEEEGGGTSB CS
   adh_short  88 tgsgpfselseee.wervievNltgvflltravlpamlkqssGrIvnvsSvagkvp 142
                 t  g +  +  e+    ++++N++g++ ltra+lp + ++ s rI+nv+S ag+ +
  KOO24599.1 120 TLYGRTRYTPFEQqASITLQTNFFGTLALTRAMLPLLRASPSPRIINVASAAGRLR 175
                 444555555555547778***********************************754 PP

  == domain 2  score: 17.9 bits;  conditional E-value: 2.7e-07
                 BHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBSSHHHH CS
   adh_short 146 vaaYsAsKaavagltrslakelaptgirvnavaPGlvdTdmak 188
                  ++Y+ sK ++++++r la++     i vn+v PG+++Td + 
  KOO24599.1 217 NTCYGVSKMGLIAMSRVLARDEPA--IMVNSVDPGYCATDQND 257
                 479*****************9876..9************9876 PP

>> adh_short_C2  Enoyl-(Acyl carrier protein) reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.7   0.0     2e-19   1.2e-15       3     133 ..      29     174 ..      26     187 .. 0.84
   2 !   23.2   0.0   6.9e-09   4.1e-05     132     187 ..     212     263 ..     195     284 .. 0.79

  Alignments for each domain:
  == domain 1  score: 57.7 bits;  conditional E-value: 2e-19
                   TTSHHHHHHHHHHHT.T-EEEEEESSGGH.HHHHHHHHHHTT.....SEE..EE--TTSHHHHHHHHHHHHHHHSSEEEEEE-----EG...CSS-G CS
  adh_short_C2   3 asgIGraiAkalaee.Gaevvltdlneea.kkrveelaeelg.....aev..lecDVtdeeqvealveevvekfgklDilvnnagiapk...lkgpf 87 
                    +gIG++iA++la+   ++v+l  +n e+ +++++ela+        a+v   ++D +d +++ea+ +++++++g+lD+lvnna+i+ +   l g++
    KOO24599.1  29 NKGIGKEIARKLAATpDMTVILGCRNLELgAAAAKELAACAWpppkqADVavQRIDLADLATIEAARDAIASEYGRLDVLVNNAAICFNdptLYGRT 125
                   58********99875499********9998889999987432344333334599*********************************9989988888 PP

                   GGH.-HHHHHHHHHHHTHHHHHHHHHHHHHCTSC..CEEEEEEEGGGTS CS
  adh_short_C2  88 let.sreefdraldvnlyslfllakaalplmkeg..gsivnlssvgaer 133
                     t  +++   +l++n+ ++++l++a+lpl++++   +i+n++s +++ 
    KOO24599.1 126 RYTpFEQQASITLQTNFFGTLALTRAMLPLLRASpsPRIINVASAAGRL 174
                   888346678899*****************998887799******98865 PP

  == domain 2  score: 23.2 bits;  conditional E-value: 6.9e-09
                   TSBSTTTTHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEE--BHCTGGGGSTTHHH CS
  adh_short_C2 132 ervvpnynaygaaKaalealtrylAvelgpkgiRvNavspgpikTlaasgikgfde 187
                    r++pn + yg++K +l+a++r lA++  +  i vN+v pg+ +T+ +++    ++
    KOO24599.1 212 ARGWPN-TCYGVSKMGLIAMSRVLARDEPA--IMVNSVDPGYCATDQNDHQG-YES 263
                   455665.69******************766..*************9977654.333 PP

>> KR  KR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.5   0.0   1.7e-09     1e-05       3      92 ..      23     115 ..      22     181 .. 0.88

  Alignments for each domain:
  == domain 1  score: 25.5 bits;  conditional E-value: 1.7e-09
                 EEEETTTSHHHHHHHHHHHHHHS-EEEEE-SS..--HHHHHHHHHHHH...TT-EEEE----TT-HHHHHHHHHHHHHHSS---EEEE----- CS
          KR   3 ylitGGlGgLGlelarwlaekgarhlvllsRsaaadedskaliaelea...lgaevevvaaDvsdkdavealleeikaeeppikGvihaAgvl 92 
                  litG   g+G+e+ar la+    +++l  R+ +  +++++++a+++    ++a+v v ++D++d + +ea+ ++i +e +++   ++ A + 
  KOO24599.1  23 ALITGSNKGIGKEIARKLAATPDMTVILGCRNLELGAAAAKELAACAWpppKQADVAVQRIDLADLATIEAARDAIASEYGRLDVLVNNAAIC 115
                 59******************************9888888888888775333699*************************9**99988877654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (299 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       297  (0.0165653); expected 358.6 (0.02)
Passed bias filter:                      266  (0.0148363); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.45u 0.26s 00:00:00.71 Elapsed: 00:00:00.42
# Mc/sec: 2146.52
//
Query:       KOO24600.1  [L=130]
Description: zinc phosphodiesterase elac protein 1 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    4.9e-08   33.2   0.0      5e-08   33.2   0.0    1.2  1  Lactamase_B    Metallo-beta-lactamase superfamily
      8e-07   28.8   0.0    9.5e-07   28.5   0.0    1.1  1  Lactamase_B_2  Beta-lactamase superfamily domain
    1.6e-05   24.4   0.0    2.3e-05   24.0   0.0    1.2  1  Lactamase_B_4  tRNase Z endonuclease


Domain annotation for each model (and alignments):
>> Lactamase_B  Metallo-beta-lactamase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.2   0.0   8.3e-12     5e-08       4      64 ..      17      72 ..      14     118 .. 0.93

  Alignments for each domain:
  == domain 1  score: 33.2 bits;  conditional E-value: 8.3e-12
                 CSSEEEEEEETTCEEEES--SCHHHHHHHHHHHHHTSGGGGEEEEE-SBSSHHHHTTGGGC CS
  Lactamase_B  4 dpvnsyliegdggviLiDtGtsteaaraalelaalglkpkdvdavilTHlHlDHiGglggl 64
                 ++++++ ++  ++  L+D G +t+ ++++       + p ++d +++TH+H DH++gl+gl
   KOO24600.1 17 RGASCTALRVRDSYWLFDVGEGTQVQLQR-----CWVRPSKIDKIFITHAHGDHAFGLPGL 72
                 678999999999999***********998.....79***********************98 PP

>> Lactamase_B_2  Beta-lactamase superfamily domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.5   0.0   1.6e-10   9.5e-07       4      91 ..      32     120 ..      30     128 .. 0.76

  Alignments for each domain:
  == domain 1  score: 28.5 bits;  conditional E-value: 1.6e-10
                    EES--TTHHHHHTCGGS--SSS--..SEEEEE-SS--HHHHGGGGCCCC....C--EE...EEEEEEHHHHHHCCTTCGHHHCHTTTTEEEEEE- CS
  Lactamase_B_2   4 LiDagpdlrqqalralqPvelrdelppidaVllthaHyDHlaglltlre....lrpkk...lplyapkgvlavleanfvylaleeepavnvheld 91 
                    L+D g ++  q++r       + ++++id +++thaH DH  gl+ l      +rpk+   l++y+p g++a ++ ++++  + + pa  vhel+
     KOO24600.1  32 LFDVGEGTQVQLQRC------WVRPSKIDKIFITHAHGDHAFGLPGLLClianGRPKNappLEIYGPHGLRAFIRVSLSFTGTRKLPAYVVHELH 120
                    566666655553333......44566***************8888877777798888899999********999999888777666666666665 PP

>> Lactamase_B_4  tRNase Z endonuclease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.0   0.0   3.9e-09   2.3e-05      13      56 ..      20      62 ..      12      68 .. 0.89

  Alignments for each domain:
  == domain 1  score: 24.0 bits;  conditional E-value: 3.9e-09
  Lactamase_B_4 13 PlllLqldskrYlfGkvgEgtQRavneqkvrlsklesiFLtgkv 56
                   ++ +L+ ++  +lf +vgEgtQ  +    vr sk+++iF+t+ +
     KOO24600.1 20 SCTALRVRDSYWLF-DVGEGTQVQLQRCWVRPSKIDKIFITHAH 62
                   67889999999***.**************************988 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (130 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       226  (0.0126053); expected 358.6 (0.02)
Passed bias filter:                      210  (0.0117129); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.37u 0.23s 00:00:00.60 Elapsed: 00:00:00.39
# Mc/sec: 994.06
//
Query:       KOO24601.1  [L=447]
Description: hypothetical protein Ctob_010928 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (447 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       577  (0.0321825); expected 358.6 (0.02)
Passed bias filter:                      370  (0.020637); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.50u 0.28s 00:00:00.78 Elapsed: 00:00:00.43
# Mc/sec: 3148.31
//
Query:       KOO24602.1  [L=211]
Description: ras-related protein ara-3 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.9e-61  206.4   0.3    2.2e-61  206.2   0.3    1.0  1  Ras          Ras family
    1.9e-32  112.0   0.3    2.7e-32  111.5   0.3    1.2  1  Roc          Ras of Complex, Roc, domain of DAPkinase
    1.4e-15   57.2   0.1    1.7e-15   56.9   0.1    1.0  1  Arf          ADP-ribosylation factor family
    7.3e-06   25.5   0.1      1e-05   25.0   0.1    1.2  1  Gtr1_RagA    Gtr1/RagA G protein conserved region
    3.1e-05   24.0   0.1    6.8e-05   22.9   0.1    1.5  2  MMR_HSR1     50S ribosome-binding GTPase
    9.2e-05   22.1   0.1    0.00017   21.2   0.1    1.4  1  GTP_EFTU     Elongation factor Tu GTP binding domain
     0.0015   19.0   0.0     0.0025   18.2   0.0    1.6  1  AAA_16       AAA ATPase domain
     0.0082   15.9   0.0      0.088   12.6   0.0    2.4  2  AAA_29       P-loop containing region of AAA domain
  ------ inclusion threshold ------
      0.013   15.4   0.0       0.28   11.1   0.0    2.1  2  RsgA_GTPase  RsgA GTPase
      0.016   14.8   0.1        4.7    6.8   0.0    2.3  2  AAA_25       AAA domain
      0.026   14.5   0.0      0.046   13.7   0.0    1.4  1  AAA_5        AAA domain (dynein-related subfamily)
      0.032   13.6   0.0      0.055   12.9   0.0    1.3  1  TniB         Bacterial TniB protein
      0.032   13.7   0.0      0.056   12.9   0.0    1.4  1  AAA_7        P-loop containing dynein motor region
      0.037   13.1   0.0      0.096   11.8   0.0    1.6  2  MCM          MCM P-loop domain
      0.068   13.4   0.0       0.27   11.5   0.0    2.0  1  AAA_22       AAA domain
       0.11   12.0   0.1       0.14   11.5   0.1    1.2  1  SRPRB        Signal recognition particle receptor beta subuni


Domain annotation for each model (and alignments):
>> Ras  Ras family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  206.2   0.3   1.9e-64   2.2e-61       1     161 [.      18     182 ..      18     183 .. 0.99

  Alignments for each domain:
  == domain 1  score: 206.2 bits;  conditional E-value: 1.9e-64
                 EEEEEESTTSSHHHHHHHHHHSSCSSSCTTTSSEEEEEEEEEETTEEEEEEEEEETTSGGGHHHHHHHHTTESEEEEEEETTBHHHHHTHHHHHHHHHH CS
         Ras   1 KlvlvGdsavGKtslllrfvkdkFkeeyesTigvdfytkeievdgkevkleiwDTAGqeefkslrelyyrdaegillvyditsresfenvkkwveeikr 99 
                 Kl+l+Gds+vGK+++l+rf++d+F++++++Tig+df++++i++dgk++kl+iwDTAGqe+fk+++++yyr+a+gillvyd+t++ sf n+++w+  i++
  KOO24602.1  18 KLLLIGDSGVGKSAILMRFADDSFTTSFITTIGIDFKIRTITLDGKRIKLQIWDTAGQERFKTITTAYYRGAMGILLVYDVTNEGSFANINQWMLAIQQ 116
                 89************************************************************************************************* PP

                 HSTTTSEEEEEEETTTGGG....G-SS-HHHHHHHHHHHTSEEEEEBTTTTCTHHHHHHHHHHHHH CS
         Ras 100 vaeenvpivLvGnKvDlee....kravsteegeelakelglkfletSAktnenveeafeellreil 161
                 +a+++v+ vL+GnK+D +     krav t++g++la+++g++f+etSAk++ n+eeaf +++r+i+
  KOO24602.1 117 HASDSVNKVLLGNKADTSGplvsKRAVATARGQALADQHGIRFFETSAKNSINIEEAFSTITRDIK 182
                 ****************9988888****************************************997 PP

>> Roc  Ras of Complex, Roc, domain of DAPkinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  111.5   0.3   2.4e-35   2.7e-32       1     119 [.      18     132 ..      18     133 .. 0.91

  Alignments for each domain:
  == domain 1  score: 111.5 bits;  conditional E-value: 2.4e-35
                 EEEEESSTTSSHHHHHHCHCT-CCC-EEETTTTEEEEEEECGGSGGCTTBTTTTCEEEEEEEE-SGGCTTTT-HHHHCTSCEEEEEEE...GHHHHCHH CS
         Roc   1 KvvlvGdsgvGKtsllkrfvedkfsekekstigvdfltkevtkikgvendkkvkkvklniWDtaGqerfrslhplylreaalailvyd...srssenlk 96 
                 K++l+GdsgvGK+ +l rf +d+f+++  +tig+df+ +++ +++g       k++kl+iWDtaGqerf+++++ y+r+a  ++lvyd   + s++n++
  KOO24602.1  18 KLLLIGDSGVGKSAILMRFADDSFTTSFITTIGIDFKIRTI-TLDG-------KRIKLQIWDTAGQERFKTITTAYYRGAMGILLVYDvtnEGSFANIN 108
                 89**********************************99876.4544.......689********************************65333679*** PP

                 HHHHHHHHHCSSS.-EEEEEE-TT CS
         Roc  97 eWlkelkkvagks.pvilvgnkiD 119
                 +W+  ++++a++s + +l+gnk+D
  KOO24602.1 109 QWMLAIQQHASDSvNKVLLGNKAD 132
                 **********9884789*****99 PP

>> Arf  ADP-ribosylation factor family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.9   0.1   1.5e-18   1.7e-15      14     174 ..      16     180 ..       9     181 .. 0.89

  Alignments for each domain:
  == domain 1  score: 56.9 bits;  conditional E-value: 1.5e-18
                 EEEEEEEESTTSSHHHHHHHHHHSSCEE.CSSSSS..EEEEEEEE..TTEEEEEEEE-SSGGGGGGGGGGCTTESEEEEEEETT-CTTHHHHHHHHHHH CS
         Arf  14 elrilllGLDnaGKtTilkklkleelvt.tvPTig..fnveelei..knlkftvwDvGGqeklRplWknYfektdavifvvDsadreRleeakeeLkal 107
                  +++ll+G  + GK+ il ++ +++++t  + Tig  f++++++   k +k+++wD  Gqe+ + +   Y++   +++ v D++++  +++ ++ + a+
  KOO24602.1  16 LIKLLLIGDSGVGKSAILMRFADDSFTTsFITTIGidFKIRTITLdgKRIKLQIWDTAGQERFKTITTAYYRGAMGILLVYDVTNEGSFANINQWMLAI 114
                 589**********************999545666533788888776699*******************************************9999886 PP

                 CTSGCCTTSEEEEEEE-TTSTTSS-HHHHHHHTTGGGSSSSSSEEEEEEBTTTTBTHHHHHHHHHHH CS
         Arf 108 leeeelkevallvlaNKqDlpealseeelrellgleelkgkrkleiqkcsavkgeglkeglewlses 174
                  +++   +v  ++l+NK D+++ l ++   ++   + l  ++ +  +++sa +  +++e+++ ++++
  KOO24602.1 115 -QQHASDSVNKVLLGNKADTSGPLVSKRAVATARGQALADQHGIRFFETSAKNSINIEEAFSTITRD 180
                 .556678899999*********998888888888899999********************9998765 PP

>> Gtr1_RagA  Gtr1/RagA G protein conserved region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.0   0.1   9.1e-09     1e-05       1     175 [.      18     181 ..      18     185 .. 0.71

  Alignments for each domain:
  == domain 1  score: 25.0 bits;  conditional E-value: 9.1e-09
   Gtr1_RagA   1 kvLLmGksgsGKtsmrsiiFdnylardtlrlgatidveksevrfl.gnltlnlwDcgGqeafveeylssqkeeifrnvgvliyVfDvesreleedletl 98 
                 k+LL+G sg GK+++     d    +     ++ id +  ++ +  + ++l++wD  Gqe+f + +        +r    ++ V Dv+    e +++++
  KOO24602.1  18 KLLLIGDSGVGKSAILMRFADDS-FTTSFITTIGIDFKIRTITLDgKRIKLQIWDTAGQERFKTIT-----TAYYRGAMGILLVYDVT---NEGSFANI 107
                 89************987755444.3333344455555555555541679************98876.....455666667788****9...78899999 PP

   Gtr1_RagA  99 keilealrqyspeakvfvli.hKmDliqedereeifeerkeeireeieklekeeiqffaTSiwde.slykAfssivqkl 175
                 ++ + a++q+  +   +vl+ +K D       ++++ + + +    +++++   i+ff TS  +   + +Afs i +++
  KOO24602.1 108 NQWMLAIQQHASDSVNKVLLgNKADTSGPLVSKRAVATARGQ--ALADQHG---IRFFETSAKNSiNIEEAFSTITRDI 181
                 9*******9999998888886799988655544444333322..2233444...9999999976536789999998765 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.9   0.1   6.1e-08   6.8e-05       2     102 ..      19     116 ..      18     130 .. 0.74
   2 ?   -2.1   0.0       3.5   3.9e+03      62      71 ..     166     175 ..     128     189 .. 0.56

  Alignments for each domain:
  == domain 1  score: 22.9 bits;  conditional E-value: 6.1e-08
                 EEEEESTTSSHHHHHHHHHTSTEEESSSTTSSSSEEEEEEEETT..EEEEEEECGGCSSHHHHHHHHHHHHHHHHCTSEEEEEEETTTT.CSHHHHHHH CS
    MMR_HSR1   2 vaivGrpNvGKStLinaltgekaivsdkpgtTrdinegrvklkg..keielvDtpGliegaseekglgkaflaleeadlillvvdasee.klkpldeel 97 
                  +++G + vGKS ++ +  ++   +s +    +d + ++++l+g   +++++Dt+G  e   + k ++ a+ +   a  illv d+++e +++++++ +
  KOO24602.1  19 LLLIGDSGVGKSAILMRFADDSFTTSFITTIGIDFKIRTITLDGkrIKLQIWDTAG-QE---RFKTITTAYYR--GAMGILLVYDVTNEgSFANINQWM 111
                 579*****************999999999888888888888776446789******.44...33356666663..5899******88443666666666 PP

                 HHHHH CS
    MMR_HSR1  98 eelle 102
                  ++++
  KOO24602.1 112 LAIQQ 116
                 66554 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 3.5
                 HHHHHHHHHH CS
    MMR_HSR1  62 eekglgkafl 71 
                 ++ ++++af 
  KOO24602.1 166 NSINIEEAFS 175
                 2224444443 PP

>> GTP_EFTU  Elongation factor Tu GTP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.2   0.1   1.5e-07   0.00017      53     190 ..      50     179 ..      39     183 .. 0.71

  Alignments for each domain:
  == domain 1  score: 21.2 bits;  conditional E-value: 1.5e-07
                 TSCSSCEEEEEETTCSSEEEEEEEESSSGGGHHHHHHHHHT-SEEEEEEETTTB....STHHHHHHHHHHHHTTTEEEEEEESCGSTHHHHHH.HHHHH CS
    GTP_EFTU  53 giTiksaaisleketkkylinliDtPGHvdFskevirglrvlDgavlvvdaveG....vepqteevlrlalkegvpiivfiNKmDrlkaelke.iveev 146
                 gi  k+ +i+l+  +k+ ++++ Dt G + F   +++ +r + g +lv d+++       +q    +++  +  v+ +++ NK+D  +  +++  v ++
  KOO24602.1  50 GIDFKIRTITLD--GKRIKLQIWDTAGQERFKTITTAYYRGAMGILLVYDVTNEgsfaNINQWMLAIQQHASDSVNKVLLGNKADTSGPLVSKrAVATA 146
                 566677777777..************************************98652433334444445555556677*********99544433033333 PP

                 HHHHHHHHHHHHHHHHTTTTTEEEEEEBTTTTBTHHHHHHHHHH CS
    GTP_EFTU 147 kqklsrkeeklekygekgekevpvvfgSalkgegvktllealve 190
                 + +            +++ + + ++ +Sa++  ++++ ++++++
  KOO24602.1 147 RGQA----------LADQ-HGIRFFETSAKNSINIEEAFSTITR 179
                 3222..........2333.3577888888888888777777765 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.2   0.0   2.2e-06    0.0025      27      88 ..      19      84 ..      18     203 .. 0.67

  Alignments for each domain:
  == domain 1  score: 18.2 bits;  conditional E-value: 2.2e-06
      AAA_16 27 vllsGesGvGKsslvrellr.alekd...........ggiflrgkcdqlesaipysalaqalareellrqllde 88
                +ll+G+sGvGKs+++ ++++ +++++           + i+l gk  +l       ++++++ + e ++ + ++
  KOO24602.1 19 LLLIGDSGVGKSAILMRFADdSFTTSfittigidfkiRTITLDGKRIKL-------QIWDTAGQ-ERFKTITTA 84
                79*************9998725555555555555544444444444444.......56666644.666666555 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.6   0.0   7.8e-05     0.088      25      39 ..      19      33 ..       9      36 .. 0.89
   2 ?    0.3   0.0      0.54   6.1e+02       5      22 ..      97     115 ..      93     131 .. 0.81

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 7.8e-05
      AAA_29 25 tlltGpsGsGKSTll 39
                 ll+G+sG+GKS++l
  KOO24602.1 19 LLLIGDSGVGKSAIL 33
                69**********997 PP

  == domain 2  score: 0.3 bits;  conditional E-value: 0.54
      AAA_29   5 qlvNWgtfdg.htieidlk 22 
                 ++ N g+f + +++++  +
  KOO24602.1  97 DVTNEGSFANiNQWMLAIQ 115
                 6889999999999988755 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   0.00025      0.28     103     121 ..      20      38 ..      11      60 .. 0.86
   2 ?    2.2   0.0      0.13   1.5e+02      43      97 ..     118     177 ..      90     190 .. 0.64

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00025
                  EEECSTTSSHHHHHHHHCT CS
  RsgA_GTPase 103 vlvGqSGvGKStLinallp 121
                  +l+G SGvGKS+++ +++ 
   KOO24602.1  20 LLIGDSGVGKSAILMRFAD 38 
                  79**********9987765 PP

  == domain 2  score: 2.2 bits;  conditional E-value: 0.13
                  HHTT-EEEEEEE-GGG--HHH.....HHHHHHHHHHHTTSEEEE--TTTHTTHHHHHHHC CS
  RsgA_GTPase  43 eekgiepvivlnKiDlleeee.....eleelkeelealgyevllvsaktkegleelkell 97 
                   +  ++ v++ nK+D           ++ + ++   + g++++ +sak++ ++ee  + +
   KOO24602.1 118 ASDSVNKVLLGNKADTSGPLVskravATARGQALADQHGIRFFETSAKNSINIEEAFSTI 177
                  345678888888888654443333345555566778889999999999988887765555 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.8   0.0    0.0082       9.2      37      54 ..      20      37 ..      17      47 .. 0.87
   2 ?    6.8   0.0    0.0042       4.7      77     129 ..      98     150 ..      93     187 .. 0.62

  Alignments for each domain:
  == domain 1  score: 5.8 bits;  conditional E-value: 0.0082
      AAA_25 37 llaGapgtGKttlaldla 54
                ll+G++g+GK+++++  a
  KOO24602.1 20 LLIGDSGVGKSAILMRFA 37
                89***********99877 PP

  == domain 2  score: 6.8 bits;  conditional E-value: 0.0042
      AAA_25  77 vsaEdsedelrrRlravgealrddarllvldlagv.eslpLfakdrggtlltad 129
                 v +E+s +++++++ a+ ++++d  +  +l + +  +s pL++k++  t++ ++
  KOO24602.1  98 VTNEGSFANINQWMLAIQQHASDSVNKVLL-GNKAdTSGPLVSKRAVATARGQA 150
                 789*****************9554444333.33344556666555444443332 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.0   4.1e-05     0.046       2      21 ..      19      38 ..      18      58 .. 0.88

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 4.1e-05
                EEEE--SSSSHHHHHHHGGG CS
       AAA_5  2 vlLvGppGtgKselaerlaa 21
                +lL+G++G+gKs + +r+a 
  KOO24602.1 19 LLLIGDSGVGKSAILMRFAD 38
                89***************986 PP

>> TniB  Bacterial TniB protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   4.9e-05     0.055      37      59 ..      18      40 ..      12      49 .. 0.90

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 4.9e-05
        TniB 37 nlllvGdsnnGKtmivekFarlh 59
                +lll+Gds +GK++i+ +Fa++ 
  KOO24602.1 18 KLLLIGDSGVGKSAILMRFADDS 40
                689****************9875 PP

>> AAA_7  P-loop containing dynein motor region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0     5e-05     0.056      35      73 ..      18      57 ..       9      66 .. 0.82

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 5e-05
       AAA_7 35 pvllvGptGtGKtviikd.llkkldkekylsltinfsaqt 73
                ++ll+G++G+GK++i+++   +++ ++ ++++ i f+ +t
  KOO24602.1 18 KLLLIGDSGVGKSAILMRfADDSFTTSFITTIGIDFKIRT 57
                789***************6666777777788888888877 PP

>> MCM  MCM P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   8.6e-05     0.096      58      86 ..      17      45 ..       9      53 .. 0.78
   2 ?   -2.5   0.0         2   2.2e+03      51      67 ..      83      99 ..      66     104 .. 0.74

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 8.6e-05
                -EEEEEESSTSTHHHHHHHHHHHSSSEEE CS
         MCM 58 invllvgdpgtaKsqlLkyveklapravy 86
                i++ll+gd+g++Ks++L + ++ + ++ +
  KOO24602.1 17 IKLLLIGDSGVGKSAILMRFADDSFTTSF 45
                899************99887665544444 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 2
                SSBBCSS-EEEEEESST CS
         MCM 51 ktklrgdinvllvgdpg 67
                 + +rg + +llv d+ 
  KOO24602.1 83 TAYYRGAMGILLVYDVT 99
                35689999999998875 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   0.00024      0.27       8      29 ..      19      40 ..      18     173 .. 0.72

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.00024
      AAA_22  8 lvvtGesGtGKTtllrrlleql 29
                l+++G sG+GK+  l r+++  
  KOO24602.1 19 LLLIGDSGVGKSAILMRFADDS 40
                689************9999865 PP

>> SRPRB  Signal recognition particle receptor beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.1   0.00013      0.14       6      86 ..      19      99 ..      15     140 .. 0.73

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.00013
                EEEE-STTSSHHHHHHHHHHSS---B---S...S-EEETTG...GGTT-SEEEETT-GCCSHHHHHHHHHHGGEEEEEEEEETT CS
       SRPRB  6 vllvGlsdsGKTslftrLttdsvkktvtSq...essaalkvksekgskltliDfPGheklrqklleklkaksslkglvfvvDSt 86
                +ll+G s  GK +++ r   ds++++ +     + ++ + + + k  kl++ D  G+e++++  +    + + + g++ v D t
  KOO24602.1 19 LLLIGDSGVGKSAILMRFADDSFTTSFITTigiDFKIRTITLDGKRIKLQIWDTAGQERFKTITT---AYYRGAMGILLVYDVT 99
                79*******************888766544321444433335678889999*******9986433...3577788888888876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (211 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       611  (0.0340789); expected 358.6 (0.02)
Passed bias filter:                      522  (0.0291148); expected 358.6 (0.02)
Passed Vit filter:                        56  (0.00312343); expected 17.9 (0.001)
Passed Fwd filter:                        16  (0.000892409); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              16  [number of targets reported over threshold]
# CPU time: 0.46u 0.24s 00:00:00.70 Elapsed: 00:00:00.39
# Mc/sec: 1614.83
//
Query:       KOO24603.1  [L=147]
Description: hypothetical protein Ctob_010924, partial [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (147 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       242  (0.0134977); expected 358.6 (0.02)
Passed bias filter:                      230  (0.0128284); expected 358.6 (0.02)
Passed Vit filter:                        11  (0.000613531); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.22s 00:00:00.56 Elapsed: 00:00:00.36
# Mc/sec: 1208.83
//
Query:       KOO24604.1  [L=142]
Description: superoxide dismutase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.1e-45  153.4   1.2      5e-45  153.2   1.2    1.0  1  Sod_Cu    Copper/zinc superoxide dismutase (SODC)


Domain annotation for each model (and alignments):
>> Sod_Cu  Copper/zinc superoxide dismutase (SODC)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  153.2   1.2   2.8e-49     5e-45      23     142 .]       7     138 ..       3     138 .. 0.97

  Alignments for each domain:
  == domain 1  score: 153.2 bits;  conditional E-value: 2.8e-49
                 CEEEEEEEECSS-STEEEEEEEESSTTTTTTTGGG-SB-STT-.CSSTTTTTCS-TTEEEEEEESTTSEEEEEEEEESC.BCSTTTBCTTEEEEEESS- CS
      Sod_Cu  23 gsvevtvevkglppggkhgfHiHengdcsagfksagghfnptgkkhgapndeerhaGDLgnievdadgtakleittdklvslkgensilgralvihaga 121
                 +++++t++v+gl+pg +hgfH+He++d s+g+ sag+h+np++k+hgap+de+rh+GDLgni++dadg+a+  i  d+l++l+g+ s++gr++++ha++
  KOO24604.1   7 DTCQITYRVTGLTPG-AHGFHVHEKADFSNGCLSAGPHYNPFNKNHGAPTDEDRHVGDLGNIVADADGVAEGVII-DHLIKLSGPYSVVGRSMMVHADP 103
                 4699*********97.6*******************************************************998.*********************** PP

                 --TT..............SCHHHTTSSSEEEEEEE CS
      Sod_Cu 122 Ddlg..............eskptgnagariacGvI 142
                 Ddlg               sk tgnagariacG I
  KOO24604.1 104 DDLGkgdnsqpsppvngkASKVTGNAGARIACGEI 138
                 *****************99**************87 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (142 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       205  (0.011434); expected 358.6 (0.02)
Passed bias filter:                      182  (0.0101512); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.31u 0.24s 00:00:00.55 Elapsed: 00:00:00.36
# Mc/sec: 1195.45
//
Query:       KOO24605.1  [L=401]
Description: cyclin-dependent kinase 10 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    5.1e-63  212.9   0.0    6.2e-63  212.6   0.0    1.1  1  Pkinase        Protein kinase domain
    1.3e-27   96.7   0.0    2.1e-27   96.1   0.0    1.2  1  Pkinase_Tyr    Protein tyrosine kinase
  ------ inclusion threshold ------
      0.012   14.6   0.0       0.02   13.8   0.0    1.3  1  Haspin_kinase  Haspin like kinase domain
       0.03   13.7   0.1      0.066   12.6   0.1    1.5  1  Kdo            Lipopolysaccharide kinase (Kdo/WaaP) family
      0.035   13.4   0.0        0.1   11.9   0.0    1.8  3  Kinase-like    Kinase-like


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  212.6   0.0   1.7e-66   6.2e-63       2     264 .]      16     312 ..      15     312 .. 0.92

  Alignments for each domain:
  == domain 1  score: 212.6 bits;  conditional E-value: 1.7e-66
                 EEEEEEEEESSEEEEEEEETTTTEEEEEEEEECHCHCHHHH...HHHHHHHHHHHHHSCTTB--EEEEEEE..SSEEEEEEE--TTEBHHHHHHHHSS. CS
     Pkinase   2 ekleklGeGsfGkVykaveketgkivAvKkikkekakkkke...kkvlrEikilkklkhpnivrlyevfee..kdelylvleyveggeladllerkgs. 94 
                 +k  klGeG++G+Vy a++k++g+ vA+K++k   +  ++e    + lrEi++l++l+hpni+ l++v+     d+++lv+e++  + la+++ + g+ 
  KOO24605.1  16 SKGDKLGEGTYGSVYTAIDKASGQRVALKRVKLTGEGFEREgmpLTSLREISLLRQLQHPNIISLLDVVVGsrADSVFLVFEFCAFD-LARVIDTMGKp 113
                 6789*****************************99988887788999********************99765599**********77.*****977767 PP

                 --HHHHHHHHHHHHHHHHHHHHTTEE-SS-SGGGEEEETTTEEEE-SGTTSEESSSSCS........BCTTTSCGGGS-HHHH.TTSCBSHHHHHHHHH CS
     Pkinase  95 lseeeakkiakqilegleylHskgiiHrDlKpeNiLidekgelKitDFGlakelesssk........ltsfvgtseYlAPEvl.keneyskkvDvWslG 184
                 +++ e+k +++++++++ey+H++ +iHrD+K +NiL+  +g lK++DFGla+    + +        +t +v+t +Y+APE+l ++++y++++D+Ws+G
  KOO24605.1 114 FAHGEVKWMMSELVHAVEYIHANLVIHRDIKMSNILLAADGTLKLCDFGLARGRCACGPghsgdgeaYTPRVVTLWYRAPELLlGATRYGPAIDMWSVG 212
                 ***************************************************9887777778899*******************99************** PP

                 HHHHHHHHSS-STTTSSHHHHHHHHHHTHHHHHHHCT.SHH...HHHTTS.........................-HHHHHHHH.HHT-SSGCCSTTHH CS
     Pkinase 185 vilyelltgkppfsgekgkekvekeldqlekilkilg.etkeklpeasei.........................seeakdllk.kllkkdpkkRltae 256
                 +il ell  +p+++        ++e+ ql +i++++g +++  +p  +e+                          e a+dll+  ll++dpk+R +a+
  KOO24605.1 213 CILGELLLHRPLLP---A----STEIAQLIAICDLIGtPSERIWPDVKELplwskvqlpaqpyndvaqtfakvrpGEAAIDLLTyGLLTYDPKQRSSAT 304
                 **************...3....3478888889999987778888888888999999*******************88889988647************* PP

                 HHHTSGGG CS
     Pkinase 257 ellqhpyl 264
                 e l+++y+
  KOO24605.1 305 ETLKQRYF 312
                 *****998 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   96.1   0.0   5.8e-31   2.1e-27       3     199 ..      17     219 ..      15     233 .. 0.82

  Alignments for each domain:
  == domain 1  score: 96.1 bits;  conditional E-value: 5.8e-31
                  EEEEEEEESSEEEEEEEEETTTTSSEEEEEEEEESTTSSHHH....HHHHHHHHHHHHTS-BTTB--EEEEEE..SSSSEEEEEE--TTEBHHHHHHH CS
  Pkinase_Tyr   3 lgkklGeGafGkVvegtlkgekekkevkVavKtlkeeateee....keelleeakimkklkhpnivkllgvct..keepllivteyvkgGdLlkfLrk 94 
                   g+klGeG++G+V+ +  k     + ++Va+K +k + +  e        l+e++++++l+hpni++ll v++  +++++++v+e+++  dL   + +
   KOO24605.1  17 KGDKLGEGTYGSVYTAIDK----ASGQRVALKRVKLTGEGFEregmPLTSLREISLLRQLQHPNIISLLDVVVgsRADSVFLVFEFCAF-DLARVIDT 109
                  5789************999....77888999888765554440012345689*********************877788********98.9******* PP

                  TCTTTSBHHHHHHHHHHHHHHHHHHHHTTEEEST-SGGGEEEEETTEEEE-STTTHEETTTSSEE.....EETTSSTSGGGGS-HHHHHHSE.EEHHH CS
  Pkinase_Tyr  95 kekekltlkdllsfalqvAkGmeyLeskklvHrdlaarNvLlsenkvvkisDfGLardiekddey.....vkkeeaklpvkWmapEslkekk.ftsks 186
                     +++   ++  ++ ++ +++ey++++ ++Hrd+   N+Ll+ + + k++DfGLar             ++ + + + + + apE l   + +  + 
   KOO24605.1 110 M-GKPFAHGEVKWMMSELVHAVEYIHANLVIHRDIKMSNILLAADGTLKLCDFGLARGRCACGPGhsgdgEAYTPRVVTLWYRAPELLLGATrYGPAI 206
                  9.*******************************************************88443333111113333444555566***9876544***** PP

                  HHHHHHHHHHHHH CS
  Pkinase_Tyr 187 DvWsfGvllwEif 199
                  D+Ws G +l E++
   KOO24605.1 207 DMWSVGCILGELL 219
                  *********9997 PP

>> Haspin_kinase  Haspin like kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.0   5.7e-06      0.02     109     256 ..      22     166 ..       9     177 .. 0.64

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 5.7e-06
  Haspin_kinase 109 seklssevyqtke..kdkevvlKviplevledvtiskelslkelkslklvkgtypglllllqdkvlkekpdfyseqqlflvlllkdkGtdLeev.. 200
                    +e+ ++ vy + +  + + v+lK + l + e ++ +  + l  l+++ l+++     ++ l d v+ ++         ++ l++++   dL++v  
     KOO24605.1  22 GEGTYGSVYTAIDkaSGQRVALKRVKL-TGEGFERE-GMPLTSLREISLLRQLQHPNIISLLDVVVGSR-------ADSVFLVFEFCAFDLARVid 108
                    666677777766655566777777777.44444443.55566666666665554444445555555555.......34555666666666666654 PP

  Haspin_kinase 201 klkswkqalsifwqivkiLyvaEtkfe..FEHRdLhldniLvdknlnvtlidlklsRl 256
                     + +     ++ w + + ++++E        HRd+++ niL+ + ++  l+d+ l+R 
     KOO24605.1 109 TMGKPFAHGEVKWMMSELVHAVEYIHAnlVIHRDIKMSNILLAADGTLKLCDFGLARG 166
                    3444444456667777777666643322256*************************96 PP

>> Kdo  Lipopolysaccharide kinase (Kdo/WaaP) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.1   1.8e-05     0.066      56     171 ..      60     166 ..      47     171 .. 0.79

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 1.8e-05
         Kdo  56 travrEfrllkrLeeagvavpkpvaagavkvgleyrAlllterlegaqdLedllakwae.laeelkrallkavgrliaklhragvnHadlyaknillqq 153
                 +++ rE++ll++L++  +  +  v  g +++ +    +l+ e    a dL+ ++ +  + +a+   + ++ ++  +++ +h+  v H+d+ + nill +
  KOO24605.1  60 LTSLREISLLRQLQHPNIISLLDVVVGSRADSV----FLVFEFC--AFDLARVIDTMGKpFAHGEVKWMMSELVHAVEYIHANLVIHRDIKMSNILLAA 152
                 678899999999998888888888888887766....5677754..467887777777776666677778888899*********************** PP

         Kdo 154 eeeeeaeiwliDldkarl 171
                 ++    ++ l D+  ar 
  KOO24605.1 153 DG----TLKLCDFGLARG 166
                 *9....888888866655 PP

>> Kinase-like  Kinase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.0      0.87   3.1e+03      16      47 ..      17      48 ..      14      71 .. 0.81
   2 ?   11.9   0.0   2.9e-05       0.1     151     211 ..     124     185 ..      93     232 .. 0.78
   3 ?   -2.8   0.0      0.83     3e+03     261     288 .]     268     300 ..     240     300 .. 0.72

  Alignments for each domain:
  == domain 1  score: -2.8 bits;  conditional E-value: 0.87
  Kinase-like 16 rgellkkgdrsvvfevkdqetgeplavkvfll 47
                 +g+ l++g  + v+ + d++ g+ +a+k   l
   KOO24605.1 17 KGDKLGEGTYGSVYTAIDKASGQRVALKRVKL 48
                 56678888899999999999999999986654 PP

  == domain 2  score: 11.9 bits;  conditional E-value: 2.9e-05
  Kinase-like 151 lqlirlaanLqakglvhgkftvdnllldekgglmlggftaLvragtkvvl.sevekgfaPpE 211
                   +l+  + +++a+ ++h +++  n+ll  +g l+l +f+  +   + ++  s   +++ P+ 
   KOO24605.1 124 SELVHAVEYIHANLVIHRDIKMSNILLAADGTLKLCDFGLARGRCACGPGhSGDGEAYTPRV 185
                  5789999*******************************865555555554445556666665 PP

  == domain 3  score: -2.8 bits;  conditional E-value: 0.83
  Kinase-like 261 w.....kfklckkipekvkaLlkkfLqlsqedR 288
                  +      f ++++   ++ +L +++L ++ ++R
   KOO24605.1 268 YndvaqTFAKVRPGEAAIDLLTYGLLTYDPKQR 300
                  144444789999999999999999999998877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (401 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       323  (0.0180155); expected 358.6 (0.02)
Passed bias filter:                      300  (0.0167327); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.46u 0.24s 00:00:00.70 Elapsed: 00:00:00.38
# Mc/sec: 3189.60
//
Query:       KOO24606.1  [L=210]
Description: hypothetical protein Ctob_010927 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (210 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       301  (0.0167884); expected 358.6 (0.02)
Passed bias filter:                      296  (0.0165096); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.41u 0.21s 00:00:00.62 Elapsed: 00:00:00.39
# Mc/sec: 1619.55
//
Query:       KOO24607.1  [L=335]
Description: alteRNAtive oxidase, partial [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    9.3e-37  126.7   0.0    1.2e-36  126.3   0.0    1.1  1  AOX       Alternative oxidase


Domain annotation for each model (and alignments):
>> AOX  Alternative oxidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  126.3   0.0   6.9e-41   1.2e-36       9     140 ..      84     216 ..      73     221 .. 0.94

  Alignments for each domain:
  == domain 1  score: 126.3 bits;  conditional E-value: 6.9e-41
         AOX   9 vklahrepktlsDkvaiglvk.llRwlaDlvtrekkleltekkylhRaifLetvAgvpgmvaavlrhLrslrlmkrdkgwirtlleeaenermHllvll 106
                     h++p tl Dk+a+g++   l   ++++t+++k   +++ +  R+i+Le+ Agvpg+vaa +rh+rslr ++rd+gwi+tlleeaenermHllv+l
  KOO24607.1  84 TAQDHHTPITLPDKLAYGVMYyGLYHPFNFITGYTKNDPSPRAIEWRLIVLESFAGVPGFVAAGFRHFRSLRSLRRDHGWIHTLLEEAENERMHLLVCL 182
                 5678*************976516999************************************************************************* PP

         AOX 107 klaeptlleRllvllaqgvffniflllYllsPrv 140
                 ++ + + ++Rl+v++aq     +++l+Y+++Prv
  KOO24607.1 183 TMFKAGPITRLMVVGAQFALSPFLFLTYMIYPRV 216
                 *********************************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (335 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       498  (0.0277762); expected 358.6 (0.02)
Passed bias filter:                      366  (0.0204139); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.26s 00:00:00.72 Elapsed: 00:00:00.42
# Mc/sec: 2391.42
//
Query:       KOO24608.1  [L=665]
Description: dynamin like protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.3e-72  242.7   0.0      7e-72  242.0   0.0    1.3  1  Dynamin_M  Dynamin central region
    3.3e-50  170.4   0.0    5.2e-50  169.8   0.0    1.3  1  Dynamin_N  Dynamin family
    5.1e-26   90.7   1.1    8.5e-26   89.9   1.1    1.4  1  GED        Dynamin GTPase effector domain
    0.00058   19.9   0.0     0.0027   17.8   0.0    2.1  1  MMR_HSR1   50S ribosome-binding GTPase
  ------ inclusion threshold ------
       0.23   11.7   0.0       0.52   10.5   0.0    1.6  1  Roc        Ras of Complex, Roc, domain of DAPkinase


Domain annotation for each model (and alignments):
>> Dynamin_M  Dynamin central region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  242.0   0.0   1.9e-75     7e-72       1     257 [.     238     502 ..     238     504 .. 0.96

  Alignments for each domain:
  == domain 1  score: 242.0 bits;  conditional E-value: 1.9e-75
   Dynamin_M   1 vvdilenkvipLklGYvgVvnRsqkdInkkksieealkkEkaFFeshpayrkladkaGtpyLakkLnqiLvehIrkslPelkkkineklqklekeleel 99 
                 ++ +l+++vipLk+G+vgVvnRsq+d  ++ks ++a+++E++FF +hp+y+++a ++G +yLa++Ln++L++h+r +lP l++k++ +l+++++el+ +
  KOO24608.1 238 ALAVLQGRVIPLKRGFVGVVNRSQQDLFDGKSPQAAREHEARFFANHPQYQSIAARMGSRYLAHRLNELLLSHVRATLPALHQKVSGSLSSARAELRDF 336
                 5789*********************************************************************************************** PP

   Dynamin_M 100 geskpsde.ektklllqlitkfkedfkklieGe.....sevs.tkelsggarireiFnetlekslekidpleelsdeeirtairnsrGrelplfvpeka 191
                 g+++ +   ++++++lq+i+kf+++++++++G+     +    + el gga+i+++F  +++++++++d++ +ls+ +i  air+++G+++plfvpe a
  KOO24608.1 337 GDERLEGRsHQGAFVLQMIHKFCTNYSEALDGTsvmvqDAARgSGELLGGAKINDVFRTQFHEAMRSVDACYGLSEADIARAIRQATGTRTPLFVPEGA 435
                 *98888888************************7766433556888***************************************************** PP

   Dynamin_M 192 FealvkkqikkleepalkcvelVyeelekiveklek.elkrFpnLreeikevvedllreqeeptkem 257
                 Fe+l+++qi+ l++++lk velV  e+++++  + +  ++r+ +L+ +i+   e+ l+++e+++ em
  KOO24608.1 436 FESLARQQIQLLRPHCLKAVELVLAEMMRLLPACLPpPVSRYAALQLRIQACGERSLSRREQKAAEM 502
                 *********************************88889*************************9987 PP

>> Dynamin_N  Dynamin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  169.8   0.0   1.4e-53   5.2e-50       1     167 [.      42     228 ..      42     229 .. 0.96

  Alignments for each domain:
  == domain 1  score: 169.8 bits;  conditional E-value: 1.4e-53
                 EEEEEBTTTTHHHHHHHHHTS--S---SSS---S-EEEEE......CCT---CCS...SSEEEE....T-EB--CHHHHHHHHHHHHHHHTSSSS--SS CS
   Dynamin_N   1 iavvGsqSsGKSSvlnaLlgedilprgpnptTrrplelql......geeeeaseravkeelkek....ekkledfsevreeieketekiagankgiskk 89 
                 i+v+GsqSsGKSSvl++ +g+d+lprg++++Trrpl+lql      g++ +a+++ +++e++e+     +++++f+++r eie+ete++ g+ k++s +
  KOO24608.1  42 IVVIGSQSSGKSSVLESFVGRDFLPRGTGIVTRRPLVLQLvrtaadGDTASATDEGATVEWGEFlhapGRRFTSFEAIRAEIEAETERKLGKSKSVSAD 140
                 89**************************************7777766666666999******************************************* PP

                 -EEEEEEETTS-SEEEEE---B-SSSGTTS.........HHHHHHH.STTEEEEEEEETTS-CCC-CHHHHHHHHSTTBTTEEEEEE- CS
   Dynamin_N  90 villkilsllvkgltlvDlPGldsvnkrdq.........elvkeyi.kkadiilavtsanhdlsnsealflarevdpkgkrtivvltk 167
                 +i l i+s++v +l+lvDlPG+++v+  dq         +++ +yi  ++++ilav++an dl++s+a +lar vdp+g rti+vltk
  KOO24608.1 141 PIRLAIYSPHVVDLSLVDLPGMTKVPIADQpanieeqlrAMALTYIePEESLILAVSAANADLATSDAIQLARRVDPEGLRTIGVLTK 228
                 ***************************************************************************************9 PP

>> GED  Dynamin GTPase effector domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   89.9   1.1   2.4e-29   8.5e-26       1      90 [.     557     646 ..     557     648 .. 0.98

  Alignments for each domain:
  == domain 1  score: 89.9 bits;  conditional E-value: 2.4e-29
                 XXXXXTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHCCCCCHHHCCTTSGGGHHHHT---SCHCCCCHHHHHHHHHHHHHCCCCC CS
         GED   1 reeseveeirslvksYfnivrktiadqiPkaimhllvneakeslqkellakLykkedldeLLkEdeeiaekRkelkkrlealkkAreils 90 
                 re++e+e irsl+ sY+ ivrk++ d++Pkaimh+lvn ++ +lq+ l+ +Ly+++++ e+L+E+e+ +++R e+   +e l++A+ +++
  KOO24608.1 557 REQLETEIIRSLLISYYGIVRKNLLDSVPKAIMHFLVNAVRANLQEDLIMELYREDQFGEMLQEEESAVRRRAECVALIEKLERAQTVID 646
                 6899**********************************************************************************9996 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.8   0.0   7.5e-07    0.0027       1      90 [.      41     203 ..      41     228 .. 0.73

  Alignments for each domain:
  == domain 1  score: 17.8 bits;  conditional E-value: 7.5e-07
                 EEEEEESTTSSHHHHHHHHHTSTEEESSSTTSSSSEEEEEEE...ETTEE................................................. CS
    MMR_HSR1   1 evaivGrpNvGKStLinaltgekaivsdkpgtTrdinegrvk...lkgke................................................. 47 
                 +++++G   +GKS+++ + +g+      +  +Tr +   ++        +                                                 
  KOO24608.1  41 QIVVIGSQSSGKSSVLESFVGRDFLPRGTGIVTRRPLVLQLVrtaA---Dgdtasatdegatvewgeflhapgrrftsfeairaeieaeterklgksks 136
                 589*******************999999999999998887762321...24567788889999999999999999999********************* PP

                 .................EEEEECGGCSS......HHHHHHHHHHHHHHHHC.TSEEEEEEETTTTCS CS
    MMR_HSR1  48 .................ielvDtpGlie......gaseekglgkaflalee.adlillvvdaseekl 90 
                                  + lvD+pG+ +       a+ e++l+   l  +e  + ++l v+a++++l
  KOO24608.1 137 vsadpirlaiysphvvdLSLVDLPGMTKvpiadqPANIEEQLRAMALTYIEpEESLILAVSAANADL 203
                 *************************743332223333333343333334443344555554442323 PP

>> Roc  Ras of Complex, Roc, domain of DAPkinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.0   0.00014      0.52       2      26 ..      42      66 ..      41      81 .. 0.90

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00014
                EEEESSTTSSHHHHHHCHCT-CCC- CS
         Roc  2 vvlvGdsgvGKtsllkrfvedkfse 26
                +v++G +++GK+s l++fv ++f +
  KOO24608.1 42 IVVIGSQSSGKSSVLESFVGRDFLP 66
                89*****************999865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (665 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       561  (0.0312901); expected 358.6 (0.02)
Passed bias filter:                      482  (0.0268838); expected 358.6 (0.02)
Passed Vit filter:                        56  (0.00312343); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.63u 0.27s 00:00:00.90 Elapsed: 00:00:00.43
# Mc/sec: 4669.73
//
Query:       KOO24609.1  [L=172]
Description: hypothetical protein Ctob_011145, partial [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (172 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       249  (0.0138881); expected 358.6 (0.02)
Passed bias filter:                      159  (0.00886831); expected 358.6 (0.02)
Passed Vit filter:                         8  (0.000446204); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.24s 00:00:00.62 Elapsed: 00:00:00.39
# Mc/sec: 1307.88
//
Query:       KOO24610.1  [L=823]
Description: glycosyltransferase family 77 protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.7e-18   66.3   0.0    5.7e-18   65.7   0.0    1.2  1  Nucleotid_trans  Nucleotide-diphospho-sugar transferase


Domain annotation for each model (and alignments):
>> Nucleotid_trans  Nucleotide-diphospho-sugar transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.7   0.0   3.2e-22   5.7e-18       4     201 ..     245     495 ..     242     504 .. 0.88

  Alignments for each domain:
  == domain 1  score: 65.7 bits;  conditional E-value: 3.2e-22
  Nucleotid_trans   4 enllvvAlDeealerckelgvpvlyltsk.........gkdsakkdeefksktykkmswrkvrlllellklGynvllsDvDvvWlrnpfpllky 88 
                      ++ ++++lD+e   +  ++++p++    +         + + + + +++ +  + + + +k+ ++  ll+ G +v +sDvD+ W+  p  l+++
       KOO24610.1 245 DRAVIASLDAEGVAMFTKRKLPTMSTSGFggitfdtrgAFKGQMDGFRWRTGAFREYGVTKAAVIIWLLRSGRDVCMSDVDAAWISTPYALMQT 338
                      67899999999999999999998888888999998887666667799*********************************************55 PP

  Nucleotid_trans  89 .edaDvlvssDsldgttadelknli....................NsGfffvrateatkallkkwaeelasesglw...Dqdvfnlllregaak 158
                       ++aDvl+ +D+l  +  +++++ +                    N+G++++ra  +t++l+ +w + + s +g     Dq +fn+l    +a+
       KOO24610.1 339 vPEADVLSGTDCLHVP--WDADRSPrkntvkncghqsgsdasawfNTGVMIFRARARTIDLMIEWRDLMDSIKGDAqidDQLTFNQLIGTVWAQ 430
                      7************955..556656667999***********************************99999986655788***********9988 PP

  Nucleotid_trans 159 e...........................sglkvrvLdtalfvngkgyfvq.vrdeeevktkkkpvavhany 201
                                                  ++ +v++ +++ f+++++y vq + d +       + ++h+++
       KOO24610.1 431 GrnlkdrfkqfyplkpasadgrvvfdgnGTRRVHAVPASAFCSAHVYHVQqSADPK------ACLVLHLTF 495
                      8**************************999********************322222......234567666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (823 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       580  (0.0323498); expected 358.6 (0.02)
Passed bias filter:                      356  (0.0198561); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.67u 0.26s 00:00:00.93 Elapsed: 00:00:00.44
# Mc/sec: 5573.19
//
Query:       KOO24611.1  [L=786]
Description: hypothetical protein Ctob_011146 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    0.00017   22.0   0.2     0.0004   20.8   0.2    1.7  1  Lipase_GDSL_2  GDSL-like Lipase/Acylhydrolase family


Domain annotation for each model (and alignments):
>> Lipase_GDSL_2  GDSL-like Lipase/Acylhydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.8   0.2   2.2e-08    0.0004       2     177 ..      57     263 ..      56     265 .. 0.72

  Alignments for each domain:
  == domain 1  score: 20.8 bits;  conditional E-value: 2.2e-08
                    EESHHHHTCTTB.....CCHCHHCCCCCCCHHHTT....-EEEEE.EEHCCH-H..HHHHHHHHCTGGG-TSEEEEE--CCCCCTT--HHHHHHH. CS
  Lipase_GDSL_2   2 lGDSiTaGygad.....gggrsypaylarllaarl....gldvvnnlgvsGattallrllerlrdllrlkpdlvtiliGtNDlgrgvpaaaaaand 88 
                    +G SiTaG+        +++  y++ +a +l++r+    g++ +n  gv+G+ +  + ++  + d l+++  lv++   +N    + ++a      
     KOO24611.1  57 VGGSITAGSSYAagsgsAADFLYHRKVAFALNKRFpvagGHAHHN-GGVPGTGP--TYMEHCVHDHLAADVELVLLEYAVNT---DRSPAS----- 141
                    666777765555666668888999998999999999996777777.******99..99999999**************9997...344444..... PP

                    .HHHHHHHHCCC.....GEEE.................CEEEEE-TTT-TTSTCCHHHHHHHHHHH............HHHHHHHCT-EEE-H... CS
  Lipase_GDSL_2  89 nleelidalraa..apgaril.................vlgplpptpeaaadarelnaviaaynea............lrevaaeegvpfvDl... 150
                     +e+l+++l ++  ap   ++                 ++ + +p + a++++++++++  ++n +            +++++++++vp+v +   
     KOO24611.1 142 -FERLLRKLLSHprAPALIVVnahrwrairphdgrtdkCWSRKWPLDMARNRTQWAAQTMGKINHVgkpdnlaadedeIAALCRHYDVPLVSMraa 236
                    .66666766666335555555*****************5555555555555555555555555555555555555555***************666 PP

                    .HHHHHHCCCCCGGBBTTS.SSB-HHHH CS
  Lipase_GDSL_2 151 .hdaladsgerladlladdglHPnaaGy 177
                      +a++++    ++ ++d   HPn+ G+
     KOO24611.1 237 lVGAVRAGVIAIPTFMNDC-KHPNGVGH 263
                    6555555555555555555.88888888 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (786 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       551  (0.0307323); expected 358.6 (0.02)
Passed bias filter:                      329  (0.0183502); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.58u 0.27s 00:00:00.85 Elapsed: 00:00:00.41
# Mc/sec: 5744.13
//
Query:       KOO24612.1  [L=280]
Description: 3-hydroxyphenylpropionic transporter [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.4e-16   59.2   8.2    3.4e-16   59.2   8.2    1.5  1  Sugar_tr  Sugar (and other) transporter
    1.1e-14   54.2  20.4    1.4e-14   53.8  20.4    1.1  1  MFS_1     Major Facilitator Superfamily


Domain annotation for each model (and alignments):
>> Sugar_tr  Sugar (and other) transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.2   8.2   3.8e-20   3.4e-16      49     204 ..     114     268 ..      99     276 .. 0.93

  Alignments for each domain:
  == domain 1  score: 59.2 bits;  conditional E-value: 3.8e-20
                 HHHHHTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH-TTTTSS-TGGGGGHHHHHHHHHHHHHHHHHHHHTTS-SCCHHHHHHHHHHHH CS
    Sugar_tr  49 glivsiflvGaiiGslfagllgdrfGRkkslliaavlfvigavlqaaakgknsvevlivgRvlvGigvGlasvlvPmyisEiApkklRgalvslyqlai 147
                  l+ s++++G i G+l++g++gdr+GRk + + +++++++g + +++++ + s  +l+ +R l+Gig+G+ ++ + +++ E + ++  g + + + +++
  KOO24612.1 114 ALSKSLVFFGWIPGALLGGPAGDRLGRKRAAVLFSLVASVGLLATGLTP-AGSCAALLGSRALTGIGIGGMYAPSFTLLVESSDPNRKGSIATTWTWGY 211
                 6777999******************************************.55*********************************************** PP

                 HHHHHHHHHHHHHHHTSS-TTHHHHHHHCCHHHHHHHHHHG.GGS---HHHHHHTT-H CS
    Sugar_tr 148 tfGilvaaifglglnktsnadgwrillglqlvpallllill.lflPESPrylvekgke 204
                 ++G  +  ++ +g++   + + wr  + l  ++ ++++++  +++ ESP yl+  g +
  KOO24612.1 212 VAGVAILCGLHYGTSALLS-WDWRAEMLLLGAWGITFALVTqMLVTESPKYLIASGAT 268
                 ***9999999999988888.**************999988879**********99855 PP

>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.8  20.4   1.6e-18   1.4e-14       3     180 ..      81     263 ..      79     275 .. 0.86

  Alignments for each domain:
  == domain 1  score: 53.8 bits;  conditional E-value: 1.6e-18
       MFS_1   3 laaflsalarsilgpalpl.alaedlgispseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllllfa.sslw.lllvlrvlqGlg 98 
                 ++a+ s +a+++l+ ++    +a+dl + +  + l  +l+++g + ++l++G+ +dr+Gr+r  +l  l+ ++gll+  ++ +++  +ll +r+l+G+g
  KOO24612.1  81 IVALHSLMAFGTLTGIFLDsSIARDLALPVELVALSKSLVFFGWIPGALLGGPAGDRLGRKRAAVLFSLVASVGLLATGLTpAGSCaALLGSRALTGIG 179
                 67777899999999999999******************************************55555555555523333545777779*********** PP

       MFS_1  99 agalfpagaaliadwfpkeergraigllsagfslGailgpllggllasslg..Wravfyilaivsllafvlfllllpeepperk 180
                  g++++ + +l+++ + ++++g+    ++ g+ +G+++  +l    +++l+  Wra +++l++ ++ ++++  +l++e+p+   
  KOO24612.1 180 IGGMYAPSFTLLVESSDPNRKGSIATTWTWGYVAGVAILCGLHYGTSALLSwdWRAEMLLLGAWGITFALVTQMLVTESPKYLI 263
                 ************************************999999987776666569999*************99999999998765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (280 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       447  (0.0249317); expected 358.6 (0.02)
Passed bias filter:                      299  (0.0166769); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.46u 0.19s 00:00:00.65 Elapsed: 00:00:00.38
# Mc/sec: 2225.03
//
Query:       KOO24613.1  [L=85]
Description: hypothetical protein Ctob_000660 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (85 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       242  (0.0134977); expected 358.6 (0.02)
Passed bias filter:                      192  (0.0107089); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.25s 00:00:00.59 Elapsed: 00:00:00.40
# Mc/sec: 631.08
//
Query:       KOO24614.1  [L=320]
Description: necap-like protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.4e-47  159.5   0.0    5.6e-47  159.2   0.0    1.1  1  DUF1681   Protein of unknown function (DUF1681)


Domain annotation for each model (and alignments):
>> DUF1681  Protein of unknown function (DUF1681)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  159.2   0.0   3.1e-51   5.6e-47       2     144 ..      15     167 ..      14     169 .. 0.89

  Alignments for each domain:
  == domain 1  score: 159.2 bits;  conditional E-value: 3.1e-51
     DUF1681   2 ervllvakevhvYkippltsskgyraadwtlekeiftgrlrvlekgekvdikLedkstgelfaaapve..tkeaavekvlDSsRyFvlrvedekgrkav 98 
                 e++l v +++ vYk+pp+ s++g+++adw ++++iftgr+ +++ g++++ikL d++tg+lfa++p++  + e +ve+v+DSsRyFvlrv+d +gr+a+
  KOO24614.1  15 EQTLSVLNTAQVYKLPPRPSTAGWQCADWPKTNHIFTGRVMIVALGKQCTIKLIDPNTGTLFAQCPLDndKPELSVEPVVDSSRYFVLRVSDGSGRSAF 113
                 79999**************************************************************96555667************************ PP

     DUF1681  99 lGigFeeRseafdfnvaLqearkvlkkekea..eekk........dysLkeGetik 144
                 lGigF eRs+af+fnv+Lq++ k+lk+e ea              d+sL    +i+
  KOO24614.1 114 LGIGFLERSDAFEFNVTLQDHVKRLKNEVEAakV--AseppppakDLSLSGSIKIS 167
                 **************************87665331..23456666699998765555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (320 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       365  (0.0203581); expected 358.6 (0.02)
Passed bias filter:                      270  (0.0150594); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.26s 00:00:00.73 Elapsed: 00:00:00.44
# Mc/sec: 2196.05
//
Query:       KOO24615.1  [L=395]
Description: hypothetical protein Ctob_000662 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      9e-06   25.8   1.9    1.9e-05   24.7   1.9    1.5  1  AAA_lid_6  AAA lid domain


Domain annotation for each model (and alignments):
>> AAA_lid_6  AAA lid domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.7   1.9   1.1e-09   1.9e-05       7      55 ..     159     207 ..     154     212 .. 0.85

  Alignments for each domain:
  == domain 1  score: 24.7 bits;  conditional E-value: 1.1e-09
   AAA_lid_6   7 lrellerrrrdenfGNARfVRnllekairrqadRlattddseltredlm 55 
                 + + l r+r+++ fGNA+ V+  l +a++r++ Rl++t   e+  +dl 
  KOO24615.1 159 AVANLARERMNPQFGNAGAVDSALTRAKERMQSRLTNTLAAEPAAADLR 207
                 45678899*****************************966677666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (395 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       482  (0.0268838); expected 358.6 (0.02)
Passed bias filter:                      366  (0.0204139); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.28s 00:00:00.74 Elapsed: 00:00:00.42
# Mc/sec: 2813.28
//
Query:       KOO24616.1  [L=468]
Description: calcium-dependent protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.2e-61  207.5   0.0      3e-61  207.1   0.0    1.2  1  Pkinase         Protein kinase domain
    9.6e-34  116.8   0.0    1.4e-33  116.3   0.0    1.2  1  Pkinase_Tyr     Protein tyrosine kinase
    3.2e-33  110.8   6.4    2.3e-08   33.0   0.2    5.1  5  EF-hand_1       EF hand
    2.9e-29   98.4   1.2    3.2e-07   29.8   0.0    4.5  4  EF-hand_6       EF-hand domain
    1.6e-28   99.0   0.0    3.8e-15   56.1   0.0    2.5  2  EF-hand_7       EF-hand domain pair
    4.1e-23   81.0   1.5      5e-11   42.3   0.0    4.3  4  EF-hand_8       EF-hand domain pair
      3e-21   73.9   7.3    1.2e-06   27.7   0.1    4.3  4  EF-hand_5       EF hand
    5.2e-08   33.2   0.0     0.0077   16.5   0.0    2.3  2  SPARC_Ca_bdg    Secreted protein acidic and rich in cysteine 
    1.3e-07   31.5   0.1      0.078   12.9   0.0    3.6  3  EF-hand_4       Cytoskeletal-regulatory complex EF hand
    2.4e-07   29.9   0.0    3.6e-07   29.3   0.0    1.2  1  Pkinase_fungal  Fungal protein kinase
    0.00014   22.1   0.0       0.24   11.8   0.0    3.2  2  EF-hand_9       EF-hand domain
    0.00043   19.7   0.0    0.00071   19.0   0.0    1.3  1  Kdo             Lipopolysaccharide kinase (Kdo/WaaP) family
    0.00066   19.1   0.0    0.00099   18.5   0.0    1.4  1  Kinase-like     Kinase-like
  ------ inclusion threshold ------
      0.029   14.3   0.1      0.069   13.1   0.1    1.7  1  APH             Phosphotransferase enzyme family
      0.031   14.5   0.0       0.93    9.6   0.1    2.3  2  p25-alpha       p25-alpha
       0.16   11.9   0.4         16    5.5   0.0    2.8  3  TerB            Tellurite resistance protein TerB


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  207.1   0.0   2.7e-64     3e-61       5     264 .]       3     258 ..       1     258 [. 0.92

  Alignments for each domain:
  == domain 1  score: 207.1 bits;  conditional E-value: 2.7e-64
                 EEEEEESSEEEEEEEETTTTEEEEEEEEECHCHCHHHHHHHHHHHHHHHHHS.CTTB--EEEEEEESSEEEEEEE--TTEBHHHHHHHHSS--HHHHHH CS
     Pkinase   5 eklGeGsfGkVykaveketgkivAvKkikkekakkkkekkvlrEikilkklk.hpnivrlyevfeekdelylvleyveggeladllerkgslseeeakk 102
                 ++lGeG+f++V +a+ek+tg   A+K ++k++ +k    ++ rE+++++    h++iv l++ fe ++   lvle+v+gge++d++ + g +se++a  
  KOO24616.1   3 RTLGEGAFAVVKEATEKATGIVRAIKLVDKKNSDK---AALEREMNVMRVAGrHRHIVSLVDEFELPNAWALVLELVKGGEVFDRICEGGLYSEADAAG 98 
                 78****************************98887...4589********999********************************************** PP

                 HHHHHHHHHHHHHHTTEE-SS-SGGGEEEETTTE...EEE-SGTTSEESSSSCS.BCTTTSCGGGS-HHHHTTSCBSHHHHHHHHHHHHHHHHHSS-ST CS
     Pkinase 103 iakqilegleylHskgiiHrDlKpeNiLidekge...lKitDFGlakelesssk.ltsfvgtseYlAPEvlkeneyskkvDvWslGvilyelltgkppf 197
                 ++ q++++le+lH +gi+HrDlKpeN+L+ +k +   +K++DFGla+ + ++ + +  ++gt  Y+APE+l ++ y+++vD+W+lGvil+ ll g +pf
  KOO24616.1  99 VVLQVARALEHLHGRGIVHRDLKPENLLLVDKSQhsdIKLCDFGLAQFFGEGMPdMVGRTGTIAYMAPEMLAGKAYDEAVDLWALGVILFILLGGYHPF 197
                 ***************************9984444488*************99988999***************************************** PP

                 TTSSHHHHHHHHHHTHHHHHHHCT.SHH...HHHTTS-HHHHHHHHHHT-SSGCCSTTHHHHHTSGGG CS
     Pkinase 198 sgekgkekvekeldqlekilkilg.etkeklpeaseiseeakdllkkllkkdpkkRltaeellqhpyl 264
                    +g +  e+ +++      + +  ++++ p ++ +s++ak+++ +ll+ dp+kR  +++ll++p++
  KOO24616.1 198 D-PQGATPDEEVARR------VQRgAWSFEDPAWKPVSSDAKSIILSLLAPDPTKRARVADLLASPWV 258
                 *.4444433333333......333488999*************************************6 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  116.3   0.0   1.3e-36   1.4e-33       4     256 ..       2     253 ..       1     255 [. 0.87

  Alignments for each domain:
  == domain 1  score: 116.3 bits;  conditional E-value: 1.3e-36
                  EEEEEEESSEEEEEEEEETTTTSSEEEEEEEEESTTSSHHHHHHHHHHHHHHHTS.-BTTB--EEEEEESSSSEEEEEE--TTEBHHHHHHHTCTTTS CS
  Pkinase_Tyr   4 gkklGeGafGkVvegtlkgekekkevkVavKtlkeeateeekeelleeakimkkl.khpnivkllgvctkeepllivteyvkgGdLlkfLrkkekekl 100
                  g++lGeGaf+ V e+t k     + +  a+K +++++++  k++l +e+++m+   +h++iv+l+      +   +v+e+vkgG++ + + +      
   KOO24616.1   2 GRTLGEGAFAVVKEATEK----ATGIVRAIKLVDKKNSD--KAALEREMNVMRVAgRHRHIVSLVDEFELPNAWALVLELVKGGEVFDRICEG--GLY 91 
                  789*************99....889999*****665554..59**************************99*******************997..999 PP

                  BHHHHHHHHHHHHHHHHHHHHTTEEEST-SGGGEEEEE...TTEEEE-STTTHEETTTSSEEEETTSSTSGGGGS-HHHHHHSEEEHHHHHHHHHHHH CS
  Pkinase_Tyr 101 tlkdllsfalqvAkGmeyLeskklvHrdlaarNvLlse...nkvvkisDfGLardiekddeyvkkeeaklpvkWmapEslkekkftsksDvWsfGvll 195
                  +  d   ++lqvA+++e+L+ + +vHrdl   N Ll +   ++ +k++DfGLa+     + + +  +++  + +mapE+l  k + ++ D W+ Gv+l
   KOO24616.1  92 SEADAAGVVLQVARALEHLHGRGIVHRDLKPENLLLVDksqHSDIKLCDFGLAQFF--GEGMPDMVGRTGTIAYMAPEMLAGKAYDEAVDLWALGVIL 187
                  9*********************************9976343568**********99..7777888889999*************************** PP

                  HHHHTTSSGTTTTS...HHHHHHHHHHTTEE.S-BB..TTSBHHHHHHHHHHT-SSGGGS--HHHHH CS
  Pkinase_Tyr 196 wEiftlgespypgl...kneevleklkegkr.lekp..ekcpeelyelmkkcweedpeeRptfselv 256
                  + ++  g +p+       +eev++++++g    e p  + ++++ ++++ + ++ dp++R++ ++l+
   KOO24616.1 188 FILLG-GYHPFDPQgatPDEEVARRVQRGAWsFEDPawKPVSSDAKSIILSLLAPDPTKRARVADLL 253
                  *7766.888764332238999*****9987624444115567899999***********99988875 PP

>> EF-hand_1  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.5   0.0       1.1   1.2e+03       4      14 ..      25      35 ..      23      37 .. 0.83
   2 !   32.3   0.0   3.4e-11   3.8e-08       1      29 []     324     352 ..     324     352 .. 0.96
   3 !   11.5   0.0   0.00015      0.17       5      26 ..     362     383 ..     359     384 .. 0.89
   4 !   33.0   0.1   2.1e-11   2.3e-08       2      29 .]     394     421 ..     393     421 .. 0.95
   5 !   33.0   0.2     2e-11   2.3e-08       2      28 ..     433     459 ..     432     460 .. 0.94

  Alignments for each domain:
  == domain 1  score: -0.5 bits;  conditional E-value: 1.1
                HHHHHHTTTSS CS
   EF-hand_1  4 eiFrefDkDgd 14
                ++++++Dk ++
  KOO24616.1 25 RAIKLVDKKNS 35
                799*****998 PP

  == domain 2  score: 32.3 bits;  conditional E-value: 3.4e-11
                 HHHHHHHHHTTTSSSEEEHHHHHHHHHHH CS
   EF-hand_1   1 elkeiFrefDkDgdGkIdfeEfkellkkl 29 
                 elk +F+ fD Dg+G+I++eE+++++++l
  KOO24616.1 324 ELKAAFQTFDLDGSGTIELEELRKVMRSL 352
                 79************************986 PP

  == domain 3  score: 11.5 bits;  conditional E-value: 0.00015
                 HHHHHTTTSSSEEEHHHHHHHH CS
   EF-hand_1   5 iFrefDkDgdGkIdfeEfkell 26 
                 +F+ +D+ ++G I+feEf++++
  KOO24616.1 362 VFKAADVLNTGNITFEEFCAAV 383
                 69999999***********986 PP

  == domain 4  score: 33.0 bits;  conditional E-value: 2.1e-11
                 HHHHHHHHTTTSSSEEEHHHHHHHHHHH CS
   EF-hand_1   2 lkeiFrefDkDgdGkIdfeEfkellkkl 29 
                 lk++F++fD+Dg+G+Id +E++ +++kl
  KOO24616.1 394 LKRAFNVFDQDGNGTIDQQELRVMMTKL 421
                 799**********************986 PP

  == domain 5  score: 33.0 bits;  conditional E-value: 2e-11
                 HHHHHHHHTTTSSSEEEHHHHHHHHHH CS
   EF-hand_1   2 lkeiFrefDkDgdGkIdfeEfkellkk 28 
                 ++++F+++D+Dg+GkI+feEf++l+k+
  KOO24616.1 433 IQQLFNLADTDGNGKITFEEFVSLFKS 459
                 789*********************986 PP

>> EF-hand_6  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.8   0.0   2.8e-10   3.2e-07       1      31 []     324     353 ..     324     353 .. 0.96
   2 !   10.3   0.0    0.0005      0.56       5      26 ..     362     383 ..     359     388 .. 0.92
   3 !   28.1   0.0   9.8e-10   1.1e-06       2      28 ..     394     420 ..     393     424 .. 0.92
   4 !   25.7   0.1   5.8e-09   6.5e-06       2      27 ..     433     458 ..     432     461 .. 0.93

  Alignments for each domain:
  == domain 1  score: 29.8 bits;  conditional E-value: 2.8e-10
   EF-hand_6   1 elreaFklfDkdgdGkidaeElrkalrkalg 31 
                 el++aF+ fD dg+G+i  eElrk++r +lg
  KOO24616.1 324 ELKAAFQTFDLDGSGTIELEELRKVMR-SLG 353
                 699************************.887 PP

  == domain 2  score: 10.3 bits;  conditional E-value: 0.0005
   EF-hand_6   5 aFklfDkdgdGkidaeElrkal 26 
                 +Fk+ D+ ++G i++eE+ +a 
  KOO24616.1 362 VFKAADVLNTGNITFEEFCAAV 383
                 7*****************9985 PP

  == domain 3  score: 28.1 bits;  conditional E-value: 9.8e-10
   EF-hand_6   2 lreaFklfDkdgdGkidaeElrkalrk 28 
                 l++aF+ fD+dg+G+id++Elr +++k
  KOO24616.1 394 LKRAFNVFDQDGNGTIDQQELRVMMTK 420
                 799********************9994 PP

  == domain 4  score: 25.7 bits;  conditional E-value: 5.8e-09
   EF-hand_6   2 lreaFklfDkdgdGkidaeElrkalr 27 
                 ++++F+l D+dg+Gki++eE++++++
  KOO24616.1 433 IQQLFNLADTDGNGKITFEEFVSLFK 458
                 789*******************9998 PP

>> EF-hand_7  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.6   0.0   2.3e-13   2.6e-10       2      70 ..     323     383 ..     322     384 .. 0.94
   2 !   56.1   0.0   3.4e-18   3.8e-15       3      70 ..     393     457 ..     391     458 .. 0.93

  Alignments for each domain:
  == domain 1  score: 40.6 bits;  conditional E-value: 2.3e-13
   EF-hand_7   2 eklkeaFkelDtdgdgyldkeellrllrkifqgagegsklsdeelellfkefDtdkdGvisfdEFlkly 70 
                 e+lk aF+ +D dg+g ++ eel++++r      + g +  + + el+fk  D  + G i+f+EF++++
  KOO24616.1 323 EELKAAFQTFDLDGSGTIELEELRKVMR------SLGAP--EGQAELVFKAADVLNTGNITFEEFCAAV 383
                 789*************************......99999..55789********************985 PP

  == domain 2  score: 56.1 bits;  conditional E-value: 3.4e-18
   EF-hand_7   3 klkeaFkelDtdgdgyldkeellrllrkifqgagegsklsdeelellfkefDtdkdGvisfdEFlkly 70 
                 +lk+aF+ +D+dg+g +d++el+ +++k+        ++++e +++lf+  Dtd++G+i+f+EF+ l+
  KOO24616.1 393 ALKRAFNVFDQDGNGTIDQQELRVMMTKLR---VVPADVTPETIQQLFNLADTDGNGKITFEEFVSLF 457
                 79*********************9999988...78888899***********************9887 PP

>> EF-hand_8  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.3   0.0   2.4e-05     0.026      26      52 ..     323     349 ..     309     352 .. 0.85
   2 !   20.6   0.0   2.5e-07   0.00028       3      51 ..     338     382 ..     337     383 .. 0.94
   3 !   17.5   0.1   2.4e-06    0.0027      32      54 ..     398     420 ..     396     421 .. 0.95
   4 !   42.3   0.0   4.4e-14     5e-11       5      53 ..     409     458 ..     409     459 .. 0.90

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 2.4e-05
   EF-hand_8  26 eevdilfrefDtdgdGkisfeEFcvll 52 
                 ee+ + f +fD+dg+G+i +eE   ++
  KOO24616.1 323 EELKAAFQTFDLDGSGTIELEELRKVM 349
                 789999****************98877 PP

  == domain 2  score: 20.6 bits;  conditional E-value: 2.5e-07
   EF-hand_8   3 gkItreelrrilrilglkkglseeevdilfrefDtdgdGkisfeEFcvl 51 
                 g I  eelr+ +r+lg      e +++ +f+++D  + G i+feEFc+ 
  KOO24616.1 338 GTIELEELRKVMRSLG----APEGQAELVFKAADVLNTGNITFEEFCAA 382
                 8999******999998....88*************************86 PP

  == domain 3  score: 17.5 bits;  conditional E-value: 2.4e-06
   EF-hand_8  32 frefDtdgdGkisfeEFcvller 54 
                 f+ fD+dg+G+i++ E  v++++
  KOO24616.1 398 FNVFDQDGNGTIDQQELRVMMTK 420
                 9********************87 PP

  == domain 4  score: 42.3 bits;  conditional E-value: 4.4e-14
   EF-hand_8   5 Itreelrrilrilglkk...glseeevdilfrefDtdgdGkisfeEFcvlle 53 
                 I+++elr ++++l       ++++e ++ lf+++Dtdg+Gki+feEF+ l++
  KOO24616.1 409 IDQQELRVMMTKLR--VvpaDVTPETIQQLFNLADTDGNGKITFEEFVSLFK 458
                 899*****998884..23479****************************997 PP

>> EF-hand_5  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.7   0.1   1.1e-09   1.2e-06       1      25 []     325     349 ..     325     349 .. 0.95
   2 ?    0.5   0.0      0.42   4.7e+02       5      21 ..     363     379 ..     360     382 .. 0.72
   3 !   22.1   0.2   6.5e-08   7.3e-05       1      25 []     394     418 ..     394     418 .. 0.90
   4 !   24.4   0.3   1.2e-08   1.3e-05       1      23 [.     433     455 ..     433     458 .. 0.90

  Alignments for each domain:
  == domain 1  score: 27.7 bits;  conditional E-value: 1.1e-09
                 HHHHHHHH-SS-SSCE-HHHHHHHH CS
   EF-hand_5   1 lkdtFqaiDlNgDGkIskeELktlv 25 
                 lk++Fq +Dl+g+G+I  eEL++++
  KOO24616.1 325 LKAAFQTFDLDGSGTIELEELRKVM 349
                 7899******************987 PP

  == domain 2  score: 0.5 bits;  conditional E-value: 0.42
                 HHHH-SS-SSCE-HHHH CS
   EF-hand_5   5 FqaiDlNgDGkIskeEL 21 
                 F+a+D+ + G I++eE+
  KOO24616.1 363 FKAADVLNTGNITFEEF 379
                 55555544588999998 PP

  == domain 3  score: 22.1 bits;  conditional E-value: 6.5e-08
                 HHHHHHHH-SS-SSCE-HHHHHHHH CS
   EF-hand_5   1 lkdtFqaiDlNgDGkIskeELktlv 25 
                 lk +F+ +D +g G+I+ +EL+ ++
  KOO24616.1 394 LKRAFNVFDQDGNGTIDQQELRVMM 418
                 5668*****************9876 PP

  == domain 4  score: 24.4 bits;  conditional E-value: 1.2e-08
                 HHHHHHHH-SS-SSCE-HHHHHH CS
   EF-hand_5   1 lkdtFqaiDlNgDGkIskeELkt 23 
                 ++++F+ +D++g GkI++eE+  
  KOO24616.1 433 IQQLFNLADTDGNGKITFEEFVS 455
                 6889*****************65 PP

>> SPARC_Ca_bdg  Secreted protein acidic and rich in cysteine Ca binding region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.3   0.0   3.5e-05     0.039      48     112 ..     317     381 ..     271     382 .. 0.85
   2 !   16.5   0.0   6.8e-06    0.0077      56     111 ..     394     454 ..     386     455 .. 0.81

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 3.5e-05
  SPARC_Ca_bdg  48 nlkeckepvawkFsklDtnsdkvlsksELaplraplvklehCikpflescDadkdkkislkEwce 112
                     +   e+++  F+++D +  ++++ +EL+++  +l   e   +  ++++D+ + ++i+ +E+c 
    KOO24616.1 317 LPPGALEELKAAFQTFDLDGSGTIELEELRKVMRSLGAPEGQAELVFKAADVLNTGNITFEEFCA 381
                   555667788889***************************************************96 PP

  == domain 2  score: 16.5 bits;  conditional E-value: 6.8e-06
  SPARC_Ca_bdg  56 vawkFsklDtnsdkvlsksELaplrapl..vkle...hCikpflescDadkdkkislkEwc 111
                   ++  F+ +D++ +++++++EL+ + ++l  v+ +   + i+++++ +D+d ++ki+ +E++
    KOO24616.1 394 LKRAFNVFDQDGNGTIDQQELRVMMTKLrvVPADvtpETIQQLFNLADTDGNGKITFEEFV 454
                   66689*****************998776334444222789*******************97 PP

>> EF-hand_4  Cytoskeletal-regulatory complex EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.9   0.0     7e-05     0.078      25      69 ..     339     383 ..     323     389 .. 0.85
   2 ?    2.2   0.0      0.15   1.7e+02      43      70 ..     392     419 ..     385     428 .. 0.87
   3 !   11.8   0.0   0.00015      0.17      42      67 ..     430     455 ..     423     459 .. 0.87

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 7e-05
   EF-hand_4  25 kltgdkvapvlknskleedklekiwdladidedgkldfeefciam 69 
                 ++  +++  v+++   +e + e +++ ad+ + g++ feefc a+
  KOO24616.1 339 TIELEELRKVMRSLGAPEGQAELVFKAADVLNTGNITFEEFCAAV 383
                 56667888999999999*************************986 PP

  == domain 2  score: 2.2 bits;  conditional E-value: 0.15
   EF-hand_4  43 dklekiwdladidedgkldfeefciamr 70 
                   l++ +++ d d +g++d +e+ ++m 
  KOO24616.1 392 MALKRAFNVFDQDGNGTIDQQELRVMMT 419
                 5688999999*************99995 PP

  == domain 3  score: 11.8 bits;  conditional E-value: 0.00015
   EF-hand_4  42 edklekiwdladidedgkldfeefci 67 
                  + ++++++lad d +gk+ feef+ 
  KOO24616.1 430 PETIQQLFNLADTDGNGKITFEEFVS 455
                 567899******************85 PP

>> Pkinase_fungal  Fungal protein kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.3   0.0   3.2e-10   3.6e-07     311     391 ..      99     174 ..      91     191 .. 0.80

  Alignments for each domain:
  == domain 1  score: 29.3 bits;  conditional E-value: 3.2e-10
  Pkinase_fungal 311 alrDaIkghrsLflkagiLHrDiSenNilitdskkegerkglLiDLDlakelsddssesgarertGTleFmaievlkgeeH 391
                     ++ ++ ++++ L+   gi+HrD   +N+l++d+   ++    L D+ la   ++     +   rtGT+++ma e+l g+  
      KOO24616.1  99 VVLQVARALEHLH-GRGIVHRDLKPENLLLVDK--SQHSDIKLCDFGLAQFFGE--GMPDMVGRTGTIAYMAPEMLAGKAY 174
                     67888899*****.*****************65..5567888***********6..5555679*************98654 PP

>> EF-hand_9  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.6   0.0    0.0089        10       2      36 ..     327     358 ..     326     383 .. 0.73
   2 !   11.8   0.0   0.00021      0.24       2      60 ..     396     455 ..     395     459 .. 0.80

  Alignments for each domain:
  == domain 1  score: 6.6 bits;  conditional E-value: 0.0089
   EF-hand_9   2 tvFevcDtqktGrVpvsrlidyLravtaqdpeese 36 
                 + F+ +D +  G++ + +l +++r  +a   +e +
  KOO24616.1 327 AAFQTFDLDGSGTIELEELRKVMRSLGA---PEGQ 358
                 679*****************99999998...3444 PP

  == domain 2  score: 11.8 bits;  conditional E-value: 0.00021
   EF-hand_9   2 tvFevcDtqktGrVpvsrl...idyLravtaqdpeeseLeelakelDPdgedasvdldtflr 60 
                 + F+v+D +  G++  ++l   ++ Lr v a d +   +++l +++D dg+ +++ ++ f  
  KOO24616.1 396 RAFNVFDQDGNGTIDQQELrvmMTKLRVVPA-DVTPETIQQLFNLADTDGN-GKITFEEFVS 455
                 68************76654222788888888.444458*************.9*****9976 PP

>> Kdo  Lipopolysaccharide kinase (Kdo/WaaP) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.0   0.0   6.3e-07   0.00071     115     166 ..      91     141 ..      61     146 .. 0.81

  Alignments for each domain:
  == domain 1  score: 19.0 bits;  conditional E-value: 6.3e-07
         Kdo 115 laeelkrallkavgrliaklhragvnHadlyaknillqqeeeeeaeiwliDl 166
                 ++e+  +  + +v+r+ + lh +g+ H+dl + n+ll  +  ++  i l D+
  KOO24616.1  91 YSEADAAGVVLQVARALEHLHGRGIVHRDLKPENLLLVDKS-QHSDIKLCDF 141
                 67777777889*************************99996.9999999999 PP

>> Kinase-like  Kinase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.5   0.0   8.9e-07   0.00099     141     253 ..      93     200 ..       4     245 .. 0.81

  Alignments for each domain:
  == domain 1  score: 18.5 bits;  conditional E-value: 8.9e-07
  Kinase-like 141 letiarlllTlqlirlaanLqakglvhgkftvdnlll...dekgglmlggftaLvragtkvvlseve....kgfaPpEllgsrggytrknktkmthkl 231
                  ++++a  +l  q+ r   +L+ +g+vh +++++nlll    ++  ++l +f+     g+ ++  +v      ++  pE+l+ ++ y          ++
   KOO24616.1  93 EADAAGVVL--QVARALEHLHGRGIVHRDLKPENLLLvdkSQHSDIKLCDFGLAQFFGEGMP-DMVGrtgtIAYMAPEMLAGKA-Y--------DEAV 178
                  555555555..99***********************9333355789*****98888888888.777755567899999999843.3........4589 PP

  Kinase-like 232 daWqlGlviyriwclklPltla 253
                  d W+lG+  + +   + P++ +
   KOO24616.1 179 DLWALGVILFILLGGYHPFDPQ 200
                  ********99999999998865 PP

>> APH  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.1   6.1e-05     0.069     149     181 ..     100     128 ..      36     145 .. 0.79

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 6.1e-05
                 HHHHHHHHHHH--SSS-EEEE-SS-SGGGEEEC CS
         APH 149 eeqvlaalaallpgelptvllHgDlhpgNllvd 181
                   qv++  +++l+g   ++++H+Dl+p Nll+ 
  KOO24616.1 100 VLQVAR-ALEHLHG---RGIVHRDLKPENLLLV 128
                 343555.4558886...*************987 PP

>> p25-alpha  p25-alpha
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.2   0.0      0.16   1.8e+02      43      69 ..     358     384 ..     327     392 .. 0.84
   2 ?    9.6   0.1   0.00083      0.93       6      69 ..     397     458 ..     394     467 .. 0.88

  Alignments for each domain:
  == domain 1  score: 2.2 bits;  conditional E-value: 0.16
   p25-alpha  43 dvDiiFsKvkaksarkitfeqfkeale 69 
                 +++++F+     ++ +itfe+f++a+ 
  KOO24616.1 358 QAELVFKAADVLNTGNITFEEFCAAVG 384
                 68899999999999*********9986 PP

  == domain 2  score: 9.6 bits;  conditional E-value: 0.00083
   p25-alpha   6 aFakfgdtkktgkemdnknfsKlckDckiidkkvtstdvDiiFsKvkaksarkitfeqfkeale 69 
                 aF +f+  ++++ ++d++++  +++   ++   vt + +  +F+   + ++ kitfe+f    +
  KOO24616.1 397 AFNVFD--QDGNGTIDQQELRVMMTKLRVVPADVTPETIQQLFNLADTDGNGKITFEEFVSLFK 458
                 566665..566889*********************************************98765 PP

>> TerB  Tellurite resistance protein TerB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.1       4.4   4.9e+03      72      97 ..      11      37 ..       8      49 .. 0.69
   2 ?    5.5   0.0     0.014        16      48      94 ..     341     386 ..     337     418 .. 0.77
   3 ?    3.7   0.0      0.05        56      42      99 ..     407     463 ..     405     467 .. 0.74

  Alignments for each domain:
  == domain 1  score: -2.6 bits;  conditional E-value: 4.4
        TerB 72 elfeeaeeeavdleqftralkrkls.p 97
                ++ +ea e+a++  ++++ + +k s  
  KOO24616.1 11 AVVKEATEKATGIVRAIKLVDKKNSdK 37
                677888888999988888887775532 PP

  == domain 2  score: 5.5 bits;  conditional E-value: 0.014
        TerB  48 Erqafrellksrfglspeeakallelfeeaeeeavdleqftralkrk 94 
                 E + +r+++ +++g ++ +a+ ++++++ + + ++ +e+f++a++  
  KOO24616.1 341 ELEELRKVM-RSLGAPEGQAELVFKAADVLNTGNITFEEFCAAVGPI 386
                 556666666.666****************************998765 PP

  == domain 3  score: 3.7 bits;  conditional E-value: 0.05
        TerB  42 gqvsesErqafrellks.rfglspeeakallelfeeaeeeavdleqftralkrklspeq 99 
                 g+++++E + +++ l+    +++pe +++l+ l++   + ++ +e+f++ +k+   p++
  KOO24616.1 407 GTIDQQELRVMMTKLRVvPADVTPETIQQLFNLADTDGNGKITFEEFVSLFKSD--PKE 463
                 6778888887777664313567788888888888888888*********99986..544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (468 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       430  (0.0239835); expected 358.6 (0.02)
Passed bias filter:                      416  (0.0232026); expected 358.6 (0.02)
Passed Vit filter:                        59  (0.00329076); expected 17.9 (0.001)
Passed Fwd filter:                        16  (0.000892409); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              16  [number of targets reported over threshold]
# CPU time: 0.53u 0.28s 00:00:00.81 Elapsed: 00:00:00.42
# Mc/sec: 3367.99
//
Query:       KOO24617.1  [L=73]
Description: hypothetical protein Ctob_000666 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (73 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1770  (0.0987227); expected 358.6 (0.02)
Passed bias filter:                      668  (0.0372581); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.23s 00:00:00.59 Elapsed: 00:00:00.37
# Mc/sec: 598.36
//
Query:       KOO24618.1  [L=542]
Description: armadillo repeat-containing protein 2 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    9.4e-09   35.0  20.8      0.054   13.5   0.3    7.3  7  Arm       Armadillo/beta-catenin-like repeat
     0.0031   18.0   1.4     0.0031   18.0   1.4    4.2  5  HEAT_EZ   HEAT-like repeat
  ------ inclusion threshold ------
      0.022   14.2   0.0        3.5    7.0   0.0    2.8  3  Arm_2     Armadillo-like
       0.16   11.2   5.3        1.6    7.9   0.3    3.1  3  PUL       PUL domain
        0.2   11.7   0.6       0.42   10.7   0.6    1.5  1  Nup54     Nucleoporin complex subunit 54


Domain annotation for each model (and alignments):
>> Arm  Armadillo/beta-catenin-like repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.1   0.1      0.13   4.6e+02      12      34 ..      72      96 ..      64     102 .. 0.69
   2 !    8.9   0.0   0.00043       1.6       1      29 [.     149     176 ..     149     179 .. 0.91
   3 !    6.6   0.2    0.0023       8.4      16      40 ..     276     304 ..     273     305 .. 0.96
   4 !   13.4   0.0   1.7e-05     0.061      16      41 .]     323     348 ..     323     348 .. 0.94
   5 !   13.5   0.3   1.5e-05     0.054       6      41 .]     354     389 ..     350     389 .. 0.83
   6 ?   -0.2   0.0      0.33   1.2e+03       1      21 [.     390     410 ..     390     419 .. 0.83
   7 ?   -2.0   1.2       1.2   4.3e+03      32      40 ..     441     449 ..     440     450 .. 0.90

  Alignments for each domain:
  == domain 1  score: 1.1 bits;  conditional E-value: 0.13
                THHHHHHHHTT..TSSHHHHHHHHH CS
         Arm 12 GavppLvrLLs..sedeevqeeAaw 34
                 +v+ L++LL+    + e++ ++ +
  KOO24618.1 72 SCVEELCALLRaaPHHAELCLNVSR 96
                499*******977666666666555 PP

  == domain 2  score: 8.9 bits;  conditional E-value: 0.00043
                 SHHHHHHHHHTTHHHHHHHHTTTSSHHHH CS
         Arm   1 nsenkdavieaGavppLvrLLssedeevq 29 
                 +++n++a+ ++ a+p+L+ LL+s  ee++
  KOO24618.1 149 HPPNREAIARL-ALPRLLGLLESHAEELL 176
                 589********.**********9988875 PP

  == domain 3  score: 6.6 bits;  conditional E-value: 0.0023
                 HHHHHTT....TSSHHHHHHHHHHHHHHT CS
         Arm  16 pLvrLLs....sedeevqeeAawALsNLa 40 
                 +L+rLL+     +d+e+  ++++A++NL+
  KOO24618.1 276 ALLRLLQgtrmAGDDELHLNVVSAVTNLS 304
                 79**************************8 PP

  == domain 4  score: 13.4 bits;  conditional E-value: 1.7e-05
                 HHHHHTTTSSHHHHHHHHHHHHHHTT CS
         Arm  16 pLvrLLssedeevqeeAawALsNLaa 41 
                 +Lv  L+ ++ e q eAa+AL+NL++
  KOO24618.1 323 ALVPALTFPNAEGQVEAARALGNLSR 348
                 6999999*****************97 PP

  == domain 5  score: 13.5 bits;  conditional E-value: 1.5e-05
                 HHHHHTTHHHHHHHHTTTSSHHHHHHHHHHHHHHTT CS
         Arm   6 davieaGavppLvrLLssedeevqeeAawALsNLaa 41 
                  ++++  + ++L+ LL++ +  v e+A++AL NLaa
  KOO24618.1 354 HTICRVRVHEALLLLLDHSSSHVAEAACGALINLAA 389
                 5666666668999******************99986 PP

  == domain 6  score: -0.2 bits;  conditional E-value: 0.33
                 SHHHHHHHHHTTHHHHHHHHT CS
         Arm   1 nsenkdavieaGavppLvrLL 21 
                 +++ + a+ie G+   L  LL
  KOO24618.1 390 DPPMRAALIEVGGAAKLAGLL 410
                 68899*******988888777 PP

  == domain 7  score: -2.0 bits;  conditional E-value: 1.2
                 HHHHHHHHT CS
         Arm  32 AawALsNLa 40 
                 Aa +L+NL+
  KOO24618.1 441 AAKTLCNLC 449
                 7889****9 PP

>> HEAT_EZ  HEAT-like repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.2   0.2      0.42   1.5e+03      24      40 ..     155     170 ..     137     180 .. 0.51
   2 ?   -3.4   0.1       4.3   1.6e+04      40      50 ..     209     219 ..     208     219 .. 0.82
   3 ?    2.7   0.0     0.054   1.9e+02      32      55 .]     323     346 ..     323     346 .. 0.88
   4 !   18.0   1.4   8.7e-07    0.0031       5      55 .]     337     387 ..     336     387 .. 0.75
   5 ?   -1.9   0.4       1.4   5.2e+03      37      52 ..     414     431 ..     403     441 .. 0.65

  Alignments for each domain:
  == domain 1  score: -0.2 bits;  conditional E-value: 0.42
     HEAT_EZ  24 plvpeilpaLlalLndd 40 
                      +lp Ll lL+ +
  KOO24618.1 155 AIARLALPRLLGLLE-S 170
                 333334444444443.3 PP

  == domain 2  score: -3.4 bits;  conditional E-value: 4.3
     HEAT_EZ  40 dsdeVRaaAag 50 
                 d++++R+ Aag
  KOO24618.1 209 DDASTRELAAG 219
                 67799999996 PP

  == domain 3  score: 2.7 bits;  conditional E-value: 0.054
     HEAT_EZ  32 aLlalLnddsdeVRaaAagaLgnl 55 
                 aL+++L+ +++e +  Aa+aLgnl
  KOO24618.1 323 ALVPALTFPNAEGQVEAARALGNL 346
                 5899999999999999*****997 PP

  == domain 4  score: 18.0 bits;  conditional E-value: 8.7e-07
     HEAT_EZ   5 raAawaLGr...laggepellqplvpeilpaLlalLnddsdeVRaaAagaLgnl 55 
                   Aa+aLG+   l++ +   ++    ++  aLl lL ++s++V +aA+gaL nl
  KOO24618.1 337 VEAARALGNlsrLPEARHTICR---VRVHEALLLLLDHSSSHVAEAACGALINL 387
                 5799999998666633333344...4488888888899999**********987 PP

  == domain 5  score: -1.9 bits;  conditional E-value: 1.4
     HEAT_EZ  37 Lnddsd.eV.RaaAagaL 52 
                 L++ ++ +V  aaAa a+
  KOO24618.1 414 LSSAPPvPVdEAAAAEAI 431
                 444334466777777766 PP

>> Arm_2  Armadillo-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.1   0.0     0.015        55      11      53 ..     115     159 ..     103     171 .. 0.78
   2 ?   -1.5   0.0      0.39   1.4e+03     113     151 ..     275     315 ..     271     324 .. 0.81
   3 ?    7.0   0.0   0.00097       3.5     108     180 ..     332     406 ..     321     412 .. 0.79

  Alignments for each domain:
  == domain 1  score: 3.1 bits;  conditional E-value: 0.015
       Arm_2  11 pkelekllalLks.sedpliqeialltlgn.saaysvnqdiirdl 53 
                  ++l+ ll+ L + s+d  +  +   +lgn saa++ n++ i  l
  KOO24618.1 115 EEHLDALLQALALhSQDRPLLIRLCFILGNlSAAHPPNREAIARL 159
                 468999999886437777777777888888689*******99766 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 0.39
       Arm_2 113 lagLkll..tnlsvtneyqhllvsyisellsLLskGnekik 151
                 la L+ll  t ++  +e +  +vs +++l + L+ G++ ++
  KOO24618.1 275 LALLRLLqgTRMAGDDELHLNVVSAVTNLSYYLVDGSVLLR 315
                 67788886668999999999999999999999999998776 PP

  == domain 3  score: 7.0 bits;  conditional E-value: 0.00097
       Arm_2 108 NsevQlagLklltnlsvtneyqhll.vsyi.sellsLLskGnekikvqvLkvllnlseNpamtrellsakvlssl 180
                 N+e Q+++ + l+nls   e +h +    + + ll LL + + ++       l+nl++ p m   l+++ + + l
  KOO24618.1 332 NAEGQVEAARALGNLSRLPEARHTIcRVRVhEALLLLLDHSSSHVAEAACGALINLAADPPMRAALIEVGGAAKL 406
                 899999999999999987776665523344156888888999999999999999999999999999988776665 PP

>> PUL  PUL domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.9   0.3   0.00044       1.6     181     246 ..      88     158 ..      54     173 .. 0.82
   2 ?    1.8   0.2     0.032   1.2e+02     162     252 ..     278     360 ..     249     380 .. 0.68
   3 ?    1.9   0.0     0.031   1.1e+02      88     140 ..     388     448 ..     386     451 .. 0.68

  Alignments for each domain:
  == domain 1  score: 7.9 bits;  conditional E-value: 0.00044
         PUL 181 atlllNlavllhk....skdelseedqvellaallealeeeeedsEalyRlLvAlGtlvyaape.gealad 246
                 a l lN++  l k    ++ ++  +++ e l+all+al+  ++d   l Rl + lG+l  a p+  ea a+
  KOO24618.1  88 AELCLNVSRVLAKlslhEDVRQRLDAREEHLDALLQALALHSQDRPLLIRLCFILGNLSAAHPPnREAIAR 158
                 56778888888777664346699999************888******************998875665544 PP

  == domain 2  score: 1.8 bits;  conditional E-value: 0.032
         PUL 162 eslltssllssnknlrialatlllNlavllhkskdelseedqvellaallealeeeeedsEalyRlLvAlGtlvyaapegealadlarvld 252
                  +ll+    + +  l++ + +++ Nl+ +l     +       +l+ al+ al  +  ++E    +  AlG+l    p  ea+ +++rv  
  KOO24618.1 278 LRLLQGTRMAGDDELHLNVVSAVTNLSYYLVD--GSVLLRSHETLCMALVPAL--TFPNAEGQVEAARALGNLSRL-P--EARHTICRV-R 360
                 44444444577788888889999999999973..2244445567777788888..578888888999999999844.4..567777777.4 PP

  == domain 3  score: 1.9 bits;  conditional E-value: 0.031
         PUL  88 lldprvsayfaeeeggktissllslllssals.ssap.......kalennrmlalRllaNl 140
                 ++dp+  a + e  g + ++ ll +llssa   + ++        +    ++la ++l+Nl
  KOO24618.1 388 AADPPMRAALIEVGGAAKLAGLLLYLLSSAPPvPVDEaaaaeaiASDVGAALLAAKTLCNL 448
                 67888888888777777777777777777765422225555554444445**********9 PP

>> Nup54  Nucleoporin complex subunit 54
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.6   0.00012      0.42      73     125 ..      79     131 ..      55     138 .. 0.88

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00012
                 HHHHHHHHHHHHHHHHHHHHHHHHHHTT-SS---SSHHHHHHHHHHHHHHHS- CS
       Nup54  73 rlekakkrhvelshRllrllrkleilrsrgyaldaeEeelrarletleaqlnd 125
                 +l +a+  h+el   + r+l+kl++ +  ++ lda Ee+l a l++l  + +d
  KOO24618.1  79 ALLRAAPHHAELCLNVSRVLAKLSLHEDVRQRLDAREEHLDALLQALALHSQD 131
                 56788899*************************************99876665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (542 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       380  (0.0211947); expected 358.6 (0.02)
Passed bias filter:                      252  (0.0140554); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.54u 0.25s 00:00:00.79 Elapsed: 00:00:00.42
# Mc/sec: 3896.10
//
Query:       KOO24619.1  [L=3212]
Description: helicase conserved c-terminal domain containing protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.6e-08   34.2   0.3    6.8e-08   32.1   0.0    2.2  2  SecA_DEAD    SecA DEAD-like domain
    0.00027   21.0   0.1    0.00096   19.2   0.1    2.0  1  MMR_HSR1     50S ribosome-binding GTPase
    0.00031   21.0   0.0    0.00087   19.6   0.0    1.8  1  Helicase_C   Helicase conserved C-terminal domain
     0.0054   16.6   0.1      0.015   15.2   0.1    1.7  1  RsgA_GTPase  RsgA GTPase
  ------ inclusion threshold ------
      0.023   14.0   0.0      0.045   13.0   0.0    1.3  1  Septin       Septin
      0.024   15.1   0.0       0.12   12.9   0.0    2.2  1  ABC_tran     ABC transporter
       0.12   12.4   0.1        1.2    9.1   0.0    2.8  3  ResIII       Type III restriction enzyme, res subunit


Domain annotation for each model (and alignments):
>> SecA_DEAD  SecA DEAD-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.3       1.5   3.9e+03      13      70 ..     677     738 ..     671     748 .. 0.68
   2 !   32.1   0.0   2.7e-11   6.8e-08      88     147 ..    2393    2452 ..    2305    2459 .. 0.87

  Alignments for each domain:
  == domain 1  score: -3.2 bits;  conditional E-value: 1.5
                 xxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxx RF
   SecA_DEAD  13 lkklkkiv.eeineleeelkalsdeeLrakteelkerlaegea...ldellpeafalvreaa 70 
                 +k+ +kiv ++   +++++ka  +e+L+ ++e+l + l+e +    ld+   +af+  r + 
  KOO24619.1 677 VKEATKIViAQYVLAKDKVKARIEEQLKLRMERLGNALSETNLssqLDQEALHAFSWARRCL 738
                 55555554155666788999999999999999999999887652236666667777776654 PP

  == domain 2  score: 32.1 bits;  conditional E-value: 2.7e-11
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   SecA_DEAD   88 vlhegkiaemkTGEGKtlvatlpaylnaltgkgvhvvtvndYLakrdaewmgpvyeflGl 147 
                  v  e ++ae+ TGEGK+lv +++a++ al +  v+ v  ++ L++rd++ ++ ++ +lGl
  KOO24619.1 2393 VHLENHLAEVPTGEGKSLVLAVTAATLALYDYHVDCVCYSNNLSSRDHDAFKDLFGALGL 2452
                  336889*****************************************************9 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.2   0.1   3.8e-07   0.00096       2      58 ..     324     403 ..     323     473 .. 0.67

  Alignments for each domain:
  == domain 1  score: 19.2 bits;  conditional E-value: 3.8e-07
                 EEEEESTTSSHHHHHHHHHT.................STEEESSSTTSSSSEEEEEEE.......ETTEEEEEEECGGCSS CS
    MMR_HSR1   2 vaivGrpNvGKStLinaltg.................ekaivsdkpgtTrdinegrvk.......lkgkeielvDtpGlie 58 
                 v+++G + vGKSt++  l+g                 ++ i ++k g T++ +++  +       ++++ + l+DtpG + 
  KOO24619.1 324 VMLLGLTGVGKSTMMHILSGnqmylfdngtnkyvsvkDEQIQGSKIGLTTNSETKMANairiqvpFSDPTWLLIDTPG-FG 403
                 899****************777777777777777664355666666666666666555555557677899********.64 PP

>> Helicase_C  Helicase conserved C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.6   0.0   3.4e-07   0.00087      15     111 .]    2762    2870 ..    2746    2870 .. 0.76

  Alignments for each domain:
  == domain 1  score: 19.6 bits;  conditional E-value: 3.4e-07
                  TTSEEEEEESSHHHHHH...HHHHHHHT.TSTEEEESTTSTHHHHHHHHHHHHTTSSSEEEESGGGTSSSTST.TESEEE.ESSSS.......SSHH CS
  Helicase_C   15 eggkilifvntidrlek...vklllekk.gikvavlhgelpqnereeileqfnkgesdvLiatdvaerGidip.kvnlVi.nfdlp.......rnvt 98  
                   ++ +l+f ++i++l++    +++ + k g + ++     + +er+  +++    + ++ +at+v +rG+d+  + ++++   +l        r+v+
  KOO24619.1 2762 GKRAVLVFFESIEELDRfynSSYFARLKdGANLLTEVTAKEPEERDSLVSKA-TRQGQITLATRVFGRGVDFIvDDEHMVtCGGLHvlltffpRDVQ 2857
                  56678********99877777777444458888888888999********99.55777*************8533444442333335555666**** PP

                  HHHHHHTTSSSTT CS
  Helicase_C   99 syiqriGRtgRag 111 
                  + +q +GR gR g
  KOO24619.1 2858 EEVQIMGRSGRQG 2870
                  ***********75 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.1     6e-06     0.015      93     163 ..     314     404 ..     302     407 .. 0.68

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 6e-06
                  HHHHCTT.SEEEEECSTTSSHHHHHHHHCTT............-----S--------------SEEEEEETT........TEEEESS-SSSS CS
  RsgA_GTPase  93 lkellkd.ktsvlvGqSGvGKStLinallpe............lelktgevseklgrGkhTTtavellelae........gglliDtPGfre 163
                  lk++ ++   ++l+G +GvGKSt++  l ++             ++k ++++  ++ G  T  ++++ +  +          lliDtPGf  
   KOO24619.1 314 LKSQAAGlPAVMLLGLTGVGKSTMMHILSGNqmylfdngtnkyVSVKDEQIQG-SKIGLTTNSETKMANAIRiqvpfsdpTWLLIDTPGFGD 404
                  555566656789******************98999988877663333333333.344555544444443322333445568999*****975 PP

>> Septin  Septin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.0   1.8e-05     0.045       7      75 ..     324     405 ..     321     421 .. 0.67

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 1.8e-05
                 EEEEEBTTSSCCCCCCTTSSSS----....--------..------S-EEEEEEEEETTCEEEEE.......EEE---BSSS CS
      Septin   7 lmvvGesglGkttlintlfetdliee....ekleease..kkkktveikkkkvvieedgvklnlt.......viDtpgfGda 75 
                 +m+ G  g+Gk+t++  l  ++++      +k+ + ++   + +++ +++++++   + +++++        +iDtpgfGd+
  KOO24619.1 324 VMLLGLTGVGKSTMMHILSGNQMYLFdngtNKYVSVKDeqIQGSKIGLTTNSETKMANAIRIQVPfsdptwlLIDTPGFGDT 405
                 8******************999987766773333333411333445555555555566677766322333448*******97 PP

>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   4.5e-05      0.12      14      62 ..     324     370 ..     311     422 .. 0.77

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 4.5e-05
                 EEEEESTTSSHHHHHHHHTTSS--..SEEEEEETTCEGGGB-HHHCCHCEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  14 vaivGenGaGKStLlkllagllkp..teGeilldgkdlkeqeleslrkeig 62 
                 v ++G +G GKSt++ +l+g+     ++G+     k ++ +++++  ++ig
  KOO24619.1 324 VMLLGLTGVGKSTMMHILSGNQMYlfDNGTN----KYVSVKDEQIQGSKIG 370
                 789*****************99877766654....2222233444444444 PP

>> ResIII  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.1   0.1       5.5   1.4e+04      31      41 ..     328     338 ..     314     342 .. 0.78
   2 ?   -2.5   0.0       1.7   4.4e+03      64      90 ..    1382    1409 ..    1379    1452 .. 0.63
   3 ?    9.1   0.0   0.00047       1.2      25     140 ..    2396    2511 ..    2371    2515 .. 0.71

  Alignments for each domain:
  == domain 1  score: -4.1 bits;  conditional E-value: 5.5
                 ESTTSTHHHHH CS
      ResIII  31 maTGtGKTlva 41 
                   TG+GK+ ++
  KOO24619.1 328 GLTGVGKSTMM 338
                 569****9998 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 1.7
                  HHHHHHHHHHGGGGTGG.....GEEEES CS
      ResIII   64 kslleqtleefkkflseayke.igkkvs 90  
                  +s+l qtl+ef+ +l+ ++   +g k++
  KOO24619.1 1382 QSVLTQTLKEFEGVLPATDVMvAGLKKD 1409
                  68999******99999875434222222 PP

  == domain 3  score: 9.1 bits;  conditional E-value: 0.00047
                  SEEEEEESTTSTHHHHHHHHHHHH-S.....-EEEEESSHHHHHHHHHHGGGGTGG.......GEEEESSS-B--.......-SEEEEEHHHHHHTH CS
      ResIII   25 krglikmaTGtGKTlvaaklierllkkgkeekflflvprkslleqtleefkkflseayke...igkkvsgdkkkakekdstnkkilvttiqsldads 118 
                  ++ l + +TG GK+lv+a +++ l+   +  ++  ++ +++l ++  ++fk+++            +  g  ++  +++  + k  ++ +q+l + +
  KOO24619.1 2396 ENHLAEVPTGEGKSLVLAVTAATLALYDY--HVDCVCYSNNLSSRDHDAFKDLFGALGLYdesSPRIRYGTFEQL-SERLMTEKHGLIREQMLASLQ 2489
                  5778999*****************99766..9*******************999865332333333333433333.566677777777788887777 PP

                  ........HHHTTT-SEEEEET CS
      ResIII  119 eeeeeeseellrdrfdviiiDE 140 
                   ++  +++ +++    v++iDE
  KOO24619.1 2490 GKKLAADKLAKPAIRRVLLIDE 2511
                  6666666667777777888888 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (3212 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       872  (0.0486363); expected 358.6 (0.02)
Passed bias filter:                      646  (0.036031); expected 358.6 (0.02)
Passed Vit filter:                        59  (0.00329076); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 1.56u 0.33s 00:00:01.89 Elapsed: 00:00:00.53
# Mc/sec: 18227.56
//
Query:       KOO24620.1  [L=262]
Description: protein notum-like protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    7.7e-37  127.2   0.0      1e-36  126.8   0.0    1.2  1  PAE       Pectinacetylesterase


Domain annotation for each model (and alignments):
>> PAE  Pectinacetylesterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  126.8   0.0   5.7e-41     1e-36      99     353 ..       2     244 ..       1     246 [. 0.90

  Alignments for each domain:
  == domain 1  score: 126.8 bits;  conditional E-value: 5.7e-41
         PAE  99 NrvkvrYCdgasfsGdve.evdkstklyFrGqrilqaviedLlekglkkakkvlLsGcSAGglaailhcdklrellpkeakvkclsdaGfFldakdisg 196
                 Nrv+v+YC+++ ++G++  ++d++  ++F G+ +l+ v++ L + gl+ a+ ++L+G SAGg++++ h+d l++++p +akv + + aG+++ a  ++g
  KOO24620.1   2 NRVYVPYCSQDLWTGQRVaASDETFGYFFSGHYVLEGVLDALDALGLAGAHDIILTGESAGGIGVWPHLDWLAARYP-KAKVTGAPLAGYYFFAVPYTG 99 
                 9***************998999999****************************************************.677****************** PP

         PAE 197 ketlksiye........evvklqgvaknlpesctsklkpekCffpqyvleqiktplFilnsayDswqiknilapsvadpkgswknckldikkcsssqlk 287
                 + +++s ++        +  + + ++++++ sc   ++p++C++ +y++++i+t +Fi++++ D++q++           ++w   + d    s+  l+
  KOO24620.1 100 PGHTSSSLAdfredawpG--HYSLWNSTVDASCAAAIEPWRCMLSNYSFPYIETRVFIIEAQTDKVQLEA----------HDWVPSSQDP-FWSAPVLD 185
                 ******999444433222..234478888***************************************98..........5676666444.4588899* PP

         PAE 288 ilqefrsellkalkevk.kskkkgvFinscfaHcqsesqstwlaeespriknktiakavgdWyfdrs 353
                 ++ e+ +++  al+      + +gvF ++cf+H     ++ w    ++ ik+ ++  a++ Wyfd +
  KOO24620.1 186 YFGEWSHNMSVALSPSMaVGHPNGVFSPACFIH-----TDGWE---TTLIKGINYLTAFDRWYFDDE 244
                 *************998868899***********.....78898...88999*************965 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (262 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       356  (0.0198561); expected 358.6 (0.02)
Passed bias filter:                      314  (0.0175135); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.24s 00:00:00.69 Elapsed: 00:00:00.42
# Mc/sec: 1879.18
//
Query:       KOO24621.1  [L=373]
Description: voltage-gated ion channel superfamily [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.3e-39  134.6   2.3    4.2e-39  134.2   2.3    1.0  1  Ion_trans      Ion transport protein
    2.3e-13   49.9   3.1    2.3e-13   49.9   3.1    2.0  3  Ion_trans_2    Ion channel
     0.0032   17.5   2.0     0.0045   17.0   2.0    1.2  1  Pol_alpha_B_N  DNA polymerase alpha subunit B N-terminal
  ------ inclusion threshold ------
      0.012   15.4   0.7      0.023   14.5   0.7    1.4  1  IRK            Inward rectifier potassium channel transmembra
      0.038   13.8   0.0       0.06   13.2   0.0    1.3  1  Lig_chan       Ligand-gated ion channel
      0.046   14.3   9.0      0.056   14.0   0.0    3.3  3  OAD_gamma      Oxaloacetate decarboxylase, gamma chain
       0.11   12.3   2.3       0.25   11.2   2.3    1.5  1  DUF4605        Domain of unknown function (DUF4605)
       0.54   10.4   5.6       0.18   11.9   2.3    1.8  2  DUF2614        Zinc-ribbon containing domain
       0.94   10.4   4.2        4.7    8.1   0.5    2.1  2  CDC37_N        Cdc37 N terminal kinase binding


Domain annotation for each model (and alignments):
>> Ion_trans  Ion transport protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  134.2   2.3   2.1e-42   4.2e-39      30     242 ..      20     226 ..       6     229 .. 0.90

  Alignments for each domain:
  == domain 1  score: 134.2 bits;  conditional E-value: 2.1e-42
                 HHCHHHHHHHHHHHHHHHHHHHHHHHH..HTHHHHHHHCHSHHHHHHHHHHHHHHHHHHHHH...HHHHHHHHHHHHGGGGGGHHHCHSHHHHHHHHHH CS
   Ion_trans  30 lektileilelvftaiftlemllkila..lgllikkrYlrdpwnilDflvvlpsllslvlse...esllllsvlrlfrvlrllklisrleglrtlvtal 123
                 ++ t++  +e++++++ft+e +l++++  +g+ + ++Yl ++ ni+Df++++p +++  l     ++l++l+++rl r+ r++k+ ++++g+ +l+t+l
  KOO24621.1  20 NR-TPFGEIETFCIMVFTVEYILRLFTspAGP-GVLKYLINLANIVDFISIIPWYIERSLPGgspQVLSVLRLIRLTRITRIFKMSKSFQGIIMLLTTL 116
                 22.88999*******************55444.88*********************99544455678999***************************** PP

                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCCCCSCCSTSSSTTTSSSSSSHHHHHHHHHHHHTTSSHHHHHHHHHHHSHHHHHHHHHHHHHHHH CS
   Ion_trans 124 irsvkdllnvlllllvvlfifaligvqlfkgklreknecaktwenpnngntnFdnfftallwlfrlmttegwgdilyatldekskvaliyfvifiilgs 222
                  +s+ +ll ++ ++ v+ ++fa + + + +g +    e +k+   p+ +++ +++++t+++w++++mtt+g+gd +++t+ +k      ++++f ++++
  KOO24621.1 117 RKSATALLMLFAFMGVFSLLFATLIYTFEMGEYD---EIRKQYVRPDGSRSPYESIPTSMWWTIVTMTTVGYGDQFPVTELGK------LVAVFTMFSG 206
                 *********************************9...666677888888888*******************************......********** PP

                 HHHHHHHHHHHHHHHHHHHH CS
   Ion_trans 223 flllNlliaviadnfqelte 242
                 +++l+l+i +i  nf++ ++
  KOO24621.1 207 LIVLSLPITIIGANFDSEYR 226
                 ****************9987 PP

>> Ion_trans_2  Ion channel
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.9   0.1       6.9   1.4e+04      33      38 ..      32      36 ..      24      44 .. 0.54
   2 ?   -2.4   0.0       2.4   4.8e+03      50      75 ..      96     121 ..      92     125 .. 0.70
   3 !   49.9   3.1   1.2e-16   2.3e-13       4      75 ..     132     219 ..     123     222 .. 0.87

  Alignments for each domain:
  == domain 1  score: -3.9 bits;  conditional E-value: 6.9
                 HHHHTT CS
  Ion_trans_2 33 fvtltT 38
                 +  ++T
   KOO24621.1 32 I-MVFT 36
                 2.2222 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 2.4
                  ---HHHHHHHHHHHHHHHHHHHHHHH CS
  Ion_trans_2  50 agrlftivyillGlalfalflavlgk 75 
                  ++r+f +   + G+++++++l + ++
   KOO24621.1  96 ITRIFKMSKSFQGIIMLLTTLRKSAT 121
                  55777777778888888888777665 PP

  == domain 3  score: 49.9 bits;  conditional E-value: 1.2e-16
                  HHTCHHHHHHHHT......................T---HHHHHHHHHHHHTTS----SSTT-----HHHHHHHHHHHHHHHHHHHHHHH CS
  Ion_trans_2   4 llvlifgaviysl..................eegwekwsfldalYfsfvtltTiGYGdivpetdagrlftivyillGlalfalflavlgk 75 
                  ++ l+f+++iy++                  ++     s+ +++++++vt+tT+GYGd  p+t++g+l+++++++ Gl++++l ++++g 
   KOO24621.1 132 VFSLLFATLIYTFemgeydeirkqyvrpdgsRSP--YESIPTSMWWTIVTMTTVGYGDQFPVTELGKLVAVFTMFSGLIVLSLPITIIGA 219
                  5667888888888888999999999999864444..489*******************************************99999885 PP

>> Pol_alpha_B_N  DNA polymerase alpha subunit B N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.0   2.0   2.3e-06    0.0045      45     129 ..     225     308 ..     222     344 .. 0.60

  Alignments for each domain:
  == domain 1  score: 17.0 bits;  conditional E-value: 2.3e-06
                    XXXXXXXXXXXXXX..XXXXX..XXXXXXXXX..XXXX........XXXX...XXXXXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
  Pol_alpha_B_N  45 lrefkkdlqdqlek..rakss..kkpktekks.aaatpraaakngdlfgmldglipstpal.kkrklssakrksafetpsrskssssklef 129
                     refkk  q++le+  ra+++  + ++++++   + +p     ++ l g+   l p +p++ kk+ +s     ++  tp + +++++++e 
     KOO24621.1 225 YREFKKAKQEELERkrRARKAqeEAAEAARRAaEQLSP--DGPKKRLSGLGSLLLPTAPSTpKKEGAS-----AQPPTPGSVAAKKEEAEK 308
                    59************543332222333333333224455..4455567777555567777763333333.....233444444344333332 PP

>> IRK  Inward rectifier potassium channel transmembrane domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.5   0.7   1.1e-05     0.023      33     128 ..     117     210 ..      94     222 .. 0.69

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 1.1e-05
         IRK  33 kwryllllfvlsfvlsw.llfallwylialahgDleeeekeeekepCvanvksftsallfslEtqttigyGsrvvteeCpeailllviqsivgllid 128
                 +   + ll++++f+  + llfa+l y+  + + D   +++    +   +  +s+ + + +++ t tt+gyG +++ +e  + ++++   +  gl++ 
  KOO24621.1 117 RKSATALLMLFAFMGVFsLLFATLIYTFEMGEYDEI-RKQYVRPDGSRSPYESIPTSMWWTIVTMTTVGYGDQFPVTELGKLVAVF--TMFSGLIVL 210
                 555556677778886653789999999999888844.5666666677788999********************9988866544433..333344443 PP

>> Lig_chan  Ligand-gated ion channel
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.0     3e-05      0.06       7      87 ..     129     211 ..     123     261 .. 0.87

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 3e-05
                 XXXTXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXHHHHHHHHHHHHHHHHHHH.HXXXXXXXXXXXXXXXXXXXXXXXXX CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxx RF
    Lig_chan   7 svlvalilvsivlflverfspyewrepeea.aetveneftlsnslwfslgalvqqG.cdesprsvsgRivvavWwffvlills 87 
                 ++ v+ +l + +++ +e     e+r++  + + ++++  ++ +s+w ++ +++  G +d+ p +  g++v+++ +f  li+ls
  KOO24621.1 129 FMGVFSLLFATLIYTFEMGEYDEIRKQYVRpDGSRSPYESIPTSMWWTIVTMTTVGyGDQFPVTELGKLVAVFTMFSGLIVLS 211
                 566677778888888888888888888777677799999*****************99999******************9998 PP

>> OAD_gamma  Oxaloacetate decarboxylase, gamma chain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   1.8       3.8   7.5e+03       5      19 ..     123     137 ..     120     148 .. 0.62
   2 ?   14.0   0.0   2.8e-05     0.056       8      60 ..     197     249 ..     196     264 .. 0.62
   3 ?    4.6   0.2     0.024        48      35      75 ..     283     321 ..     269     323 .. 0.61

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 3.8
   OAD_gamma   5 lltllGmgvVFvvLi 19 
                 ll+l+++  VF  L+
  KOO24621.1 123 LLMLFAFMGVFSLLF 137
                 455555555665553 PP

  == domain 2  score: 14.0 bits;  conditional E-value: 2.8e-05
   OAD_gamma   8 llGmgvVFvvLilLslvislfskiikkkakkkkkkakaaaaaaaaaaaaaeld 60 
                 l+++ + F +Li+Lsl i+++++ +  +  + kk+++++ + ++ a +a+e++
  KOO24621.1 197 LVAVFTMFSGLIVLSLPITIIGANFDSEYREFKKAKQEELERKRRARKAQEEA 249
                 5678899*************999888774433333333333333333332222 PP

  == domain 3  score: 4.6 bits;  conditional E-value: 0.024
   OAD_gamma  35 kakkkkkkakaaaaaaaaaaaaaeldddeelvAvIaaAiaa 75 
                   kk+ + a+++++ + aa++  e++++ + + +I + i++
  KOO24621.1 283 TPKKEGASAQPPTPGSVAAKK--EEAEKKDPIKIIQTIIHE 321
                 345555555555555555544..567788888888888886 PP

>> DUF4605  Domain of unknown function (DUF4605)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   2.3   0.00013      0.25      32      54 ..     122     144 ..     119     146 .. 0.90

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00013
     DUF4605  32 lllllllflGlrGlllvgllcfv 54 
                 +ll+l++f+G++ ll++ l++ +
  KOO24621.1 122 ALLMLFAFMGVFSLLFATLIYTF 144
                 68999***************987 PP

>> DUF2614  Zinc-ribbon containing domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   2.3   8.9e-05      0.18      10      57 ..      98     144 ..      91     154 .. 0.84
   2 ?   -2.4   0.1       2.6   5.1e+03      13      26 ..     199     212 ..     195     225 .. 0.61

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 8.9e-05
     DUF2614  10 rtfalllvfiglivmyigllfkeselllvlflllGlllvlastvvyfw 57 
                 r f ++  f g+i m ++ l k+++ ll+lf  +G++ +l++t++y +
  KOO24621.1  98 RIFKMSKSFQGII-MLLTTLRKSATALLMLFAFMGVFSLLFATLIYTF 144
                 6788999999976.667777899999999*****************76 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 2.6
     DUF2614  13 alllvfiglivmyi 26 
                 a++ +f gliv+ +
  KOO24621.1 199 AVFTMFSGLIVLSL 212
                 45555666665544 PP

>> CDC37_N  Cdc37 N terminal kinase binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.1   0.5    0.0024       4.7      27      62 ..     226     261 ..     220     272 .. 0.89
   2 ?    3.5   0.2     0.064   1.3e+02      40      79 ..     304     344 ..     299     365 .. 0.61

  Alignments for each domain:
  == domain 1  score: 8.1 bits;  conditional E-value: 0.0024
     CDC37_N  27 rsfirwKqrdihekreqrkaeikklklereindkll 62 
                 r f ++Kq++  +kr +rka+ ++ ++ r+  ++l 
  KOO24621.1 226 REFKKAKQEELERKRRARKAQEEAAEAARRAAEQLS 261
                 78899*********************9999988876 PP

  == domain 2  score: 3.5 bits;  conditional E-value: 0.064
     CDC37_N  40 kreqrkaeikklkle.reindkllkridkllealkekevee 79 
                 + +++k+ ik +++  +e n +ll++id+lle  ++k  ++
  KOO24621.1 304 EEAEKKDPIKIIQTIiHESNYQLLAEIDELLERHENKLRAQ 344
                 55666666666665435677777777777777755444443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (373 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1590  (0.0886831); expected 358.6 (0.02)
Passed bias filter:                      910  (0.0507558); expected 358.6 (0.02)
Passed Vit filter:                       102  (0.00568911); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.62u 0.26s 00:00:00.88 Elapsed: 00:00:00.42
# Mc/sec: 2684.69
//
Query:       KOO24622.1  [L=814]
Description: chaperone protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.1e-19   70.2   0.1    1.8e-19   69.6   0.1    1.3  1  DnaJ      DnaJ domain
    1.4e-07   31.2   0.0    3.3e-07   30.0   0.0    1.6  1  PDZ_6     PDZ domain
    2.1e-06   28.0   0.0    6.7e-06   26.4   0.0    1.9  2  fn3       Fibronectin type III domain
    1.2e-05   25.6   0.0    2.5e-05   24.6   0.0    1.6  1  PDZ       PDZ domain
     0.0047   17.2   0.0     0.0099   16.2   0.0    1.5  1  PDZ_2     PDZ domain
  ------ inclusion threshold ------
        0.1   13.2   0.0        7.3    7.2   0.0    2.4  2  PhoD_N    PhoD-like phosphatase, N-terminal domain


Domain annotation for each model (and alignments):
>> DnaJ  DnaJ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.6   0.1   6.1e-23   1.8e-19       2      63 .]       8      69 ..       7      69 .. 0.99

  Alignments for each domain:
  == domain 1  score: 69.6 bits;  conditional E-value: 6.1e-23
                HHHHHTSSTTG-HHHHHHHHHHHHHHHSTTTSCCHHHHHHHHHHHHHHHHHHTSHHHHHHHH CS
        DnaJ  2 yYeiLgvskdasedeIkkaYrklalkyHPDknpkdpeaeekFkeineAyevLsdpekRkqYD 63
                +Y  Lgv+ da+e+ Ikka+rkl+lk+HPD+np+d++a++kF+ +n  y  Ls+  +R+qYD
  KOO24622.1  8 FYHALGVTFDADEQAIKKAFRKLSLKLHPDRNPGDESAKDKFQIVNSSYACLSETPRREQYD 69
                7************************************************************9 PP

>> PDZ_6  PDZ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.0   0.0   1.1e-10   3.3e-07       1      42 [.     515     554 ..     515     563 .. 0.94

  Alignments for each domain:
  == domain 1  score: 30.0 bits;  conditional E-value: 1.1e-10
       PDZ_6   1 vVtaVdpgsPAdrAGlrvGDiilsvNGqpveglsladvaall 42 
                 vV +V+++s A++AGlrvG ++  v G+pv  ++++ + +ll
  KOO24622.1 515 VVCEVKANSAAEKAGLRVGERLYTVAGKPV--MNTDNAFDLL 554
                 699***************************..***9999987 PP

>> fn3  Fibronectin type III domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.0   0.0         6   1.8e+04      60      78 ..      88     106 ..      84     110 .. 0.83
   2 !   26.4   0.0   2.3e-09   6.7e-06      12      79 ..     697     768 ..     687     775 .. 0.85

  Alignments for each domain:
  == domain 1  score: -4.0 bits;  conditional E-value: 6
                 EESSSTTEEEEEEEEEEET CS
         fn3  60 ltgLkpgteYevrVqavng 78 
                 l+ L+ +++Y + V  v++
  KOO24622.1  88 LRELELDANYMFPVLGVKT 106
                 77899999**999988876 PP

  == domain 2  score: 26.4 bits;  conditional E-value: 2.3e-09
                 SSSEEEEEEE-CS...SSSSTEEEEEEEEEETTSTSTEEEEEECST..SSEEEEESSSTTEEEEEEEEEEETS CS
         fn3  12 tstsltvsWeppk...dgggpitgYeveyrekgseeewneftvprt..ttsvtltgLkpgteYevrVqavngg 79 
                  +++l v+W+ p    d  g + +Ye+++r++++   w+  + +rt   t++ l+gL+p + Y +rV+++ ++
  KOO24622.1 697 EGSELLVEWQLPVwagDSAGAVHHYELQWRNEEEDW-WTASSSSRTiaLTRARLRGLRPASAYWLRVRSIGAD 768
                 67899*******99889999************7776.9999999997755*****************987555 PP

>> PDZ  PDZ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.6   0.0   8.3e-09   2.5e-05       2      80 ..     490     564 ..     489     566 .. 0.84

  Alignments for each domain:
  == domain 1  score: 24.6 bits;  conditional E-value: 8.3e-09
                 EEEETS.TTSESSEEEEEETTSSSSSSEEEEEECTTSHHHHHTSSTTEEEEEETTEETTTSHHHHHHHHHHTTTSEEEEE CS
         PDZ   2 vsleke.grgglGfslkggsdqrgdkgifvsevlpggaaeadglkvGDkIlsvNgvdvenvsheeavqaikgskgkvtLt 80 
                 ++l+k+ ++++lG+ ++ gs  +    ++v+ev +++aae++gl+vG ++  v g++v n   + a +++  + g ++Lt
  KOO24622.1 490 LTLNKPmQGSRLGLDIEQGSLPD---VVVVCEVKANSAAEKAGLRVGERLYTVAGKPVMNT--DNAFDLLCDAIGDIKLT 564
                 6788888***********99985...********************************887..66666666665555555 PP

>> PDZ_2  PDZ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.0   3.3e-06    0.0099       3      50 ..     501     548 ..     499     559 .. 0.83

  Alignments for each domain:
  == domain 1  score: 16.2 bits;  conditional E-value: 3.3e-06
                 ..XX------..-EEEEEE-TTSGGGGT.--TT-EEEEETTB--SSHH CS
       PDZ_2   3 lGvsvsdeedtggvlvvsVkeggPaakaglkagDvilkvdgkkvksle 50 
                 lG  +++ +    v+v +Vk ++ a+kagl+ g +++ v gk+v +++
  KOO24622.1 501 LGLDIEQGSLPDVVVVCEVKANSAAEKAGLRVGERLYTVAGKPVMNTD 548
                 66666666666689999**************************96655 PP

>> PhoD_N  PhoD-like phosphatase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.2   0.0    0.0024       7.3      53      78 ..     739     767 ..     724     778 .. 0.75
   2 ?    3.3   0.0     0.039   1.2e+02      50      73 ..     789     812 ..     781     812 .. 0.89

  Alignments for each domain:
  == domain 1  score: 7.2 bits;  conditional E-value: 0.0024
      PhoD_N  53 seldytvkvevtgLkpgqeyfYrfr...a 78 
                 s++    +++++gL+p++ y+ r+r   a
  KOO24622.1 739 SRTIALTRARLRGLRPASAYWLRVRsigA 767
                 4444556899**************96553 PP

  == domain 2  score: 3.3 bits;  conditional E-value: 0.039
      PhoD_N  50 latseldytvkvevtgLkpgqeyf 73 
                 +a +++d +v+v ++ L+p+ +y+
  KOO24622.1 789 QAFANSDGSVHVFLEPLPPFATYY 812
                 566889*****************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (814 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       362  (0.0201908); expected 358.6 (0.02)
Passed bias filter:                      279  (0.0155614); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.58u 0.25s 00:00:00.83 Elapsed: 00:00:00.41
# Mc/sec: 5926.84
//
Query:       KOO24623.1  [L=512]
Description: transmembrane protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.4e-05   24.9   1.0       0.21   11.9   0.2    2.8  2  TPR_8     Tetratricopeptide repeat
    6.7e-05   22.4   0.1    0.00015   21.2   0.1    1.6  1  START     START domain
    0.00088   19.0   4.5      0.072   12.9   0.3    2.7  3  TPR_1     Tetratricopeptide repeat
     0.0019   18.2   6.5       0.03   14.4   0.2    3.4  3  TPR_2     Tetratricopeptide repeat
     0.0022   18.7   2.1       0.69   10.9   0.0    3.9  4  TPR_14    Tetratricopeptide repeat
     0.0051   16.7   0.3        3.4    7.9   0.1    3.4  3  TPR_7     Tetratricopeptide repeat
  ------ inclusion threshold ------
       0.05   13.3   0.1         16    5.3   0.1    2.6  2  TPR_11    TPR repeat


Domain annotation for each model (and alignments):
>> TPR_8  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.9   0.2   8.4e-05      0.21      13      33 ..      49      69 ..      40      70 .. 0.91
   2 !   10.9   0.0   0.00017      0.44       7      32 ..      76     101 ..      71     103 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 8.4e-05
                HTT-HHHHHHHHHHHHHHHHH CS
       TPR_8 13 klgdyeeAkeyyekaleldpd 33
                k g++++A e++e a++l+p+
  KOO24623.1 49 KEGKFKKACECIEAAIKLQPK 69
                78*****************97 PP

  == domain 2  score: 10.9 bits;  conditional E-value: 0.00017
                 HHHHHHHTT-HHHHHHHHHHHHHHHH CS
       TPR_8   7 lgsiylklgdyeeAkeyyekaleldp 32 
                  +++ lklgd++ A+e+y+ ++ l+ 
  KOO24623.1  76 AANLRLKLGDHHLAIEAYRGVIALKG 101
                 578889*************9998875 PP

>> START  START domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.2   0.1   5.9e-08   0.00015      49     206 ..     277     437 ..     264     440 .. 0.74

  Alignments for each domain:
  == domain 1  score: 21.2 bits;  conditional E-value: 5.9e-08
                 EEEECCSCHHHHHHHHHCCCGGGTTCT-TT-SEEEEEEEECTT..EEEEEEEE--TT..-SS-EEEEEEEEEEE...TTS-EEEEEEEEE-TTS--... CS
       START  49 raigvvdmvaallveellkdaeyraqWdktlasaetvevissg..galqlyvaelvalsplspRdfvflRsire..lgdgsyvivdrSvtseqnppe.. 141
                 r+ g + +++ l ++ + + ae  ++W   + +ae++ +is+   +++++    + + +p+  R  ++  si    +++ s ++++ S+   ++++   
  KOO24623.1 277 RIDGELSGASLLHASAVAHEAELWPKWMPFCGAAEVLTHISPYerTTYVQ----FDL-TPMMKRGALIHWSISDslQERQSILLLGASLGDAAPVEVpa 370
                 55666677777777778888887888999999999999999995422222....233.45566777777777767779999********9999999887 PP

                 -TTSEE.-EESSEEEEEEEECTCEEEEEEEEXEEXX.SSXXHHHHHHHHHHHHHHHHHHHHHHTXXX CS
       START 142 sssvvR.aellpSgilieplgnghskvtwvehvdlk.gwlpkwllrslvksglaegaktwvatlqrl 206
                 s+++++ a   +   li+pl +  ++v wv+hvdlk g+lp+ l+  + ++ ++  ++t+++  q+ 
  KOO24623.1 371 SAEGIKlASFKCIKVLIHPLTKTSCRVRWVSHVDLKaGSLPQTLVSMVTNKVAGSLLSTLMREAQKA 437
                 777776466677788999999999***********94456677777777777777777776666665 PP

>> TPR_1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.9   0.3   2.8e-05     0.072       1      33 [.      37      69 ..      37      70 .. 0.93
   2 !    7.3   0.0    0.0017       4.3       8      25 ..      77      94 ..      76     101 .. 0.90
   3 ?   -3.7   0.1         5   1.3e+04      23      30 ..     119     126 ..     112     128 .. 0.54

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 2.8e-05
                HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT CS
       TPR_1  1 akalynlGnayfklgkydeAleyyekALelnPn 33
                a+ l+ ++  + k gk+++A e+ e A++l+P+
  KOO24623.1 37 AEELFDRAKQFNKEGKFKKACECIEAAIKLQPK 69
                6778999999**********************7 PP

  == domain 2  score: 7.3 bits;  conditional E-value: 0.0017
                HHHHHHTT-HHHHHHHHH CS
       TPR_1  8 GnayfklgkydeAleyye 25
                +n+ +klg++  A+e+y+
  KOO24623.1 77 ANLRLKLGDHHLAIEAYR 94
                68889************7 PP

  == domain 3  score: -3.7 bits;  conditional E-value: 5
                 HHHHHHHH CS
       TPR_1  23 yyekALel 30 
                    +A+el
  KOO24623.1 119 KLVEAIEL 126
                 44456655 PP

>> TPR_2  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.4   0.2   1.2e-05      0.03       2      33 ..      38      69 ..      37      70 .. 0.86
   2 ?    5.2   0.1      0.01        26       8      30 ..      77      99 ..      75     103 .. 0.86
   3 ?   -0.2   0.2      0.59   1.5e+03      16      31 ..     112     127 ..     110     129 .. 0.79

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 1.2e-05
       TPR_2  2 ealynlGlayyklgdyeeAleafekAleldPn 33
                e l+ +++   k g++++A e+ e+A++l P+
  KOO24623.1 38 EELFDRAKQFNKEGKFKKACECIEAAIKLQPK 69
                6677777777799*****************97 PP

  == domain 2  score: 5.2 bits;  conditional E-value: 0.01
       TPR_2  8 GlayyklgdyeeAleafekAlel 30
                +++ +klgd+  A+ea++ +++l
  KOO24623.1 77 ANLRLKLGDHHLAIEAYRGVIAL 99
                78889************988877 PP

  == domain 3  score: -0.2 bits;  conditional E-value: 0.59
       TPR_2  16 dyeeAleafekAleld 31 
                 ++e A++ + +A+el+
  KOO24623.1 112 ELEMAERKLVEAIELA 127
                 5788999999999987 PP

>> TPR_14  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.0       5.1   1.3e+04      23      41 ..       3      21 ..       1      23 [. 0.79
   2 !   10.9   0.0   0.00027      0.69       2      37 ..      38      73 ..      37      77 .. 0.89
   3 ?    5.2   0.1     0.019        48       7      35 ..      76     104 ..      72     107 .. 0.81
   4 ?   -2.2   0.2       4.3   1.1e+04      12      27 ..     115     130 ..     112     142 .. 0.72

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 5.1
      TPR_14 23 llrralalaPddaeawlll 41
                 lr+ +a a d+a+++++ 
  KOO24623.1  3 RLRQGIASAADNARTLTMQ 21
                5899999999999988875 PP

  == domain 2  score: 10.9 bits;  conditional E-value: 0.00027
      TPR_14  2 eallalaeallalGdpdeAiallrralalaPddaea 37
                e l ++a+ +   G++++A ++ ++a++l+P+   a
  KOO24623.1 38 EELFDRAKQFNKEGKFKKACECIEAAIKLQPKISMA 73
                66889**************************97655 PP

  == domain 3  score: 5.2 bits;  conditional E-value: 0.019
      TPR_14   7 laeallalGdpdeAiallrralalaPdda 35 
                 +a + l lGd+  Ai+++r ++al  +d+
  KOO24623.1  76 AANLRLKLGDHHLAIEAYRGVIALKGQDP 104
                 67778899***********9999766654 PP

  == domain 4  score: -2.2 bits;  conditional E-value: 4.3
      TPR_14  12 lalGdpdeAiallrra 27 
                 +a +++ eAi+l+r+ 
  KOO24623.1 115 MAERKLVEAIELARQQ 130
                 5666677888887764 PP

>> TPR_7  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.9   0.0     0.012        31      11      32 ..      49      68 ..      46      71 .. 0.83
   2 !    7.9   0.1    0.0013       3.4       6      29 ..      77     100 ..      74     131 .. 0.88
   3 ?   -3.3   0.0         5   1.3e+04      19      32 ..     146     160 ..     144     161 .. 0.76

  Alignments for each domain:
  == domain 1  score: 4.9 bits;  conditional E-value: 0.012
       TPR_7 11 rlGdyeeAielyeqsLaltkdp 32
                ++G++++A e+ e+  a+  +p
  KOO24623.1 49 KEGKFKKACECIEA--AIKLQP 68
                58************..777665 PP

  == domain 2  score: 7.9 bits;  conditional E-value: 0.0013
       TPR_7   6 arlysrlGdyeeAielyeqsLalt 29 
                 a+l+ +lGd+  Aie y+ ++al 
  KOO24623.1  77 ANLRLKLGDHHLAIEAYRGVIALK 100
                 8999**************977665 PP

  == domain 3  score: -3.3 bits;  conditional E-value: 5
       TPR_7  19 ielyeqsL.altkdp 32 
                 +  y ++L +l +d 
  KOO24623.1 146 ANWYAAQLdELSEDL 160
                 677999999988875 PP

>> TPR_11  TPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.3   0.1    0.0063        16       3      26 ..      46      69 ..      44      69 .. 0.91
   2 ?    5.2   0.0    0.0066        17       2      28 ..      78     104 ..      77     105 .. 0.86

  Alignments for each domain:
  == domain 1  score: 5.3 bits;  conditional E-value: 0.0063
      TPR_11  3 ayyeqGkyeeAieaYkkAlkldPd 26
                 + + Gk+++A e+ ++A+kl P+
  KOO24623.1 46 QFNKEGKFKKACECIEAAIKLQPK 69
                67899****************995 PP

  == domain 2  score: 5.2 bits;  conditional E-value: 0.0066
      TPR_11   2 dayyeqGkyeeAieaYkkAlkldPdna 28 
                 ++  ++G+   AieaY+  ++l+ +++
  KOO24623.1  78 NLRLKLGDHHLAIEAYRGVIALKGQDP 104
                 677899**************9987766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (512 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       674  (0.0375927); expected 358.6 (0.02)
Passed bias filter:                      577  (0.0321825); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.56u 0.28s 00:00:00.84 Elapsed: 00:00:00.43
# Mc/sec: 3551.86
//
Query:       KOO24624.1  [L=407]
Description: hypothetical protein Ctob_000657 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.9e-36  125.6  16.1    1.9e-36  125.6  16.1    1.8  2  LrgB      LrgB-like family
     0.0042   17.0  17.1      0.035   14.1   3.5    3.5  3  LrgA      LrgA family
  ------ inclusion threshold ------
       0.82    9.6   2.5         11    5.9   0.1    2.3  2  MgsA_C    MgsA AAA+ ATPase C terminal


Domain annotation for each model (and alignments):
>> LrgB  LrgB-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.3      0.58   3.5e+03      77     106 ..      75     102 ..      51     114 .. 0.65
   2 !  125.6  16.1   3.1e-40   1.9e-36       2     210 ..     157     390 ..     156     393 .. 0.88

  Alignments for each domain:
  == domain 1  score: -2.7 bits;  conditional E-value: 0.58
        LrgB  77 llaillgllvgslvsllsavllakllglse 106
                 l +i ++l +g+ +sl+sa ++  +lg+ +
  KOO24624.1  75 LSKIGIVLGLGMPFSLFSAGVI--VLGIRR 102
                 4556666666666666666554..344444 PP

  == domain 2  score: 125.6 bits;  conditional E-value: 3.1e-40
        LrgB   2 llaYllakalykklkkpllnPvlvaivliillllllgis.............yetYke.........gakllsllLgpatVaLAvpLYkqrellkknll 78 
                 lla+ ++ +++  ++ +ll P++   v+  +++ ++g+              ++tY +         ++++l+ +Lg+++ ++++ +Y qr+ll ++++
  KOO24624.1 157 LLAWTVGGLIFGSIPPALLAPLMPHPVVATAVCATIGVAcagqltgegyyttLKTYLTkgkdgkpkgSGDVLMSFLGVVVLTFGFHIYGQRALLVRHAA 255
                 56777777777777778888888888888888777777777777776666666666666666666666677777************************* PP

        LrgB  79 aillgllvgslvsllsavllakllglseelllsllpkSvTtpiAmevseelgGips...ltavlviltGilGallgelllkllrikdpvarGlalGtas 174
                 +i+   +++sl+s+l+++ +a++lgl+++l+l+l+p+SvT+++Am+++++lg  +s   + a+ v++tG++Ga+l+++ll+l +  dp++rGla+++++
  KOO24624.1 256 EIVGCAAISSLLSMLVTASAARALGLTPDLTLALVPRSVTVALAMPIAQQLGTPESnipICAASVLVTGLVGAVLCQRLLTLGGFVDPLVRGLATAASC 354
                 ****************************************************876544499************************************** PP

        LrgB 175 haiGtakalelgeeagafsslamvlaGiltallapl 210
                 h++Gta+++ +++ a  f++l+++l+Gi+ +l+a +
  KOO24624.1 355 HGFGTAALAATEPAALPFAALGYGLTGIAASLWAAV 390
                 ********************************9865 PP

>> LrgA  LrgA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.1   3.5   5.8e-06     0.035      11      92 ..       4      95 ..       1      97 [. 0.76
   2 !    9.9   0.5   0.00012       0.7      41      92 ..     223     274 ..     205     277 .. 0.92
   3 ?    1.5   0.4     0.048   2.8e+02      45      89 ..     280     326 ..     274     331 .. 0.67

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 5.8e-06
        LrgA 11 lplpiPgsviGlllLlllLl...........tkivklekveeaadfllkhlallFvPagvgvmeyldllka.ellailvalvvstllvlvvtgl 92
                 ++++P s++G++ +l  L                 ++   +a +++ ++l+l++vPa v +   +++l++ el +i ++l +++ ++l+ +g+
  KOO24624.1  4 ADIKFPPSLLGMFGILGGLWglsasgnlaaaE--SIVAAAAPALKWVGRYLPLFYVPALVVLPLAVEALSSsELSKIGIVLGLGMPFSLFSAGV 95
                57899**************9999*97665431..234455667789999*************99998886515667777777777777776666 PP

  == domain 2  score: 9.9 bits;  conditional E-value: 0.00012
        LrgA  41 eaadfllkhlallFvPagvgvmeyldllkaellailvalvvstllvlvvtgl 92 
                   +d+l++ l +  +  g  +  +  ll +++++i+ + ++s ll+++vt+ 
  KOO24624.1 223 GSGDVLMSFLGVVVLTFGFHIYGQRALLVRHAAEIVGCAAISSLLSMLVTAS 274
                 67899*********************************************96 PP

  == domain 3  score: 1.5 bits;  conditional E-value: 0.048
        LrgA  45 fllkhlallFvPagvgvmeyldllkaella..ilvalvvstllvlvv 89 
                 +l+  l+l +vP  v v   + + ++ + +   + ++++s+l++ +v
  KOO24624.1 280 GLTPDLTLALVPRSVTVALAMPIAQQLGTPesNIPICAASVLVTGLV 326
                 677889999******99999999888876521233444444444444 PP

>> MgsA_C  MgsA AAA+ ATPase C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.6   0.9    0.0023        14      28      76 ..     250     299 ..     246     301 .. 0.91
   2 ?    5.9   0.1    0.0019        11      43      72 ..     292     321 ..     283     324 .. 0.77

  Alignments for each domain:
  == domain 1  score: 5.6 bits;  conditional E-value: 0.0023
                 HHHHHHHTTGGGSTTHHHHHHHHHHHHHHH-T.TTTHHHHHHHHHHHHCS CS
      MgsA_C  28 lviiAseDiGlAdpqalqlavaaaeaveriGl.pEariaLaqavvylala 76 
                 lv++A+e +G A  + l  +  +a+a++ +Gl p+  +aL    v +ala
  KOO24624.1 250 LVRHAAEIVGCAAISSLLSMLVTASAARALGLtPDLTLALVPRSVTVALA 299
                 789****************************6599999999988888887 PP

  == domain 2  score: 5.9 bits;  conditional E-value: 0.0019
                 HHHHHHHHHHHHHHH-TTTTHHHHHHHHHH CS
      MgsA_C  43 alqlavaaaeaveriGlpEariaLaqavvy 72 
                   +++  a+  ++++G pE++i++  a v 
  KOO24624.1 292 RSVTVALAMPIAQQLGTPESNIPICAASVL 321
                 44566678999*************998876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (407 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       557  (0.031067); expected 358.6 (0.02)
Passed bias filter:                      268  (0.0149478); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.46u 0.24s 00:00:00.70 Elapsed: 00:00:00.39
# Mc/sec: 3131.86
//
Query:       KOO24625.1  [L=821]
Description: flagellar calcium-binding protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.8e-09   36.5   0.0     0.0071   15.8   0.0    3.9  4  EF-hand_1  EF hand
    1.5e-08   33.9   0.0     0.0064   16.3   0.0    4.3  4  EF-hand_6  EF-hand domain
    2.6e-07   29.8   0.1       0.04   13.4   0.0    3.8  3  EF-hand_5  EF hand
      3e-07   30.8   0.1       0.12   12.9   0.0    3.7  3  EF-hand_7  EF-hand domain pair
    1.5e-05   24.8   0.1      0.085   12.7   0.0    2.8  3  EF-hand_8  EF-hand domain pair
  ------ inclusion threshold ------
        1.6    8.5  17.1        5.6    6.8   0.8    4.8  5  SHOCT      Short C-terminal domain
        7.7    6.7   9.9         84    3.3   9.9    2.5  1  DehI       Halocarboxylic acid dehydrogenase DehI


Domain annotation for each model (and alignments):
>> EF-hand_1  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.0   5.4e-06     0.014       5      22 ..     617     634 ..     615     638 .. 0.88
   2 ?   -0.1   0.0      0.35   8.9e+02      12      26 ..     689     703 ..     686     704 .. 0.86
   3 ?   -3.4   0.0       3.8   9.7e+03      14      26 ..     746     758 ..     745     759 .. 0.84
   4 !   15.8   0.0   2.8e-06    0.0071       6      27 ..     782     803 ..     781     805 .. 0.94

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 5.4e-06
                 HHHHHTTTSSSEEEHHHH CS
   EF-hand_1   5 iFrefDkDgdGkIdfeEf 22 
                 +F+ fD +++G+I++ E 
  KOO24625.1 617 LFDRFDANHNGYISLAEC 634
                 79*************996 PP

  == domain 2  score: -0.1 bits;  conditional E-value: 0.35
                 TSSSEEEHHHHHHHH CS
   EF-hand_1  12 DgdGkIdfeEfkell 26 
                 D d ++++ Ef+ l+
  KOO24625.1 689 DDDDYVTRPEFRLLI 703
                 8899*******9875 PP

  == domain 3  score: -3.4 bits;  conditional E-value: 3.8
                 SSEEEHHHHHHHH CS
   EF-hand_1  14 dGkIdfeEfkell 26 
                 d +I ++E+ ++l
  KOO24625.1 746 DNRIQRDEWEKAL 758
                 788999**99876 PP

  == domain 4  score: 15.8 bits;  conditional E-value: 2.8e-06
                 HHHHTTTSSSEEEHHHHHHHHH CS
   EF-hand_1   6 FrefDkDgdGkIdfeEfkellk 27 
                 F+++Dk++ G+I+f Ef+e+l+
  KOO24625.1 782 FDVIDKNRGGHISFPEFCEWLE 803
                 899****************997 PP

>> EF-hand_6  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.0   2.5e-06    0.0064       4      24 ..     616     636 ..     612     644 .. 0.85
   2 ?    0.7   0.0      0.26   6.6e+02      12      27 ..     689     704 ..     688     706 .. 0.87
   3 ?   -0.7   0.0      0.76   1.9e+03      14      27 ..     746     759 ..     745     765 .. 0.87
   4 !   10.3   0.0   0.00021      0.54       6      27 ..     782     803 ..     780     810 .. 0.93

  Alignments for each domain:
  == domain 1  score: 16.3 bits;  conditional E-value: 2.5e-06
   EF-hand_6   4 eaFklfDkdgdGkidaeElrk 24 
                  +F+ fD +++G+i+ +E+ +
  KOO24625.1 616 VLFDRFDANHNGYISLAECGA 636
                 58****************987 PP

  == domain 2  score: 0.7 bits;  conditional E-value: 0.26
   EF-hand_6  12 dgdGkidaeElrkalr 27 
                 d+d ++++ E+r +++
  KOO24625.1 689 DDDDYVTRPEFRLLIS 704
                 899********98876 PP

  == domain 3  score: -0.7 bits;  conditional E-value: 0.76
   EF-hand_6  14 dGkidaeElrkalr 27 
                 d+ i ++E+ kal 
  KOO24625.1 746 DNRIQRDEWEKALP 759
                 789********996 PP

  == domain 4  score: 10.3 bits;  conditional E-value: 0.00021
   EF-hand_6   6 FklfDkdgdGkidaeElrkalr 27 
                 F+ +Dk++ G+i++ E+  +l 
  KOO24625.1 782 FDVIDKNRGGHISFPEFCEWLE 803
                 99****************9997 PP

>> EF-hand_5  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.4   0.0   1.5e-05      0.04       4      20 ..     617     633 ..     613     634 .. 0.89
   2 ?   -0.1   0.0      0.29   7.4e+02      13      23 ..     746     756 ..     746     758 .. 0.87
   3 !   10.9   0.0    0.0001      0.26       3      21 ..     781     798 ..     780     802 .. 0.94

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 1.5e-05
                 HHHHH-SS-SSCE-HHH CS
   EF-hand_5   4 tFqaiDlNgDGkIskeE 20 
                 +F+++D+N+ G+Is  E
  KOO24625.1 617 LFDRFDANHNGYISLAE 633
                 7*************988 PP

  == domain 2  score: -0.1 bits;  conditional E-value: 0.29
                 SSCE-HHHHHH CS
   EF-hand_5  13 DGkIskeELkt 23 
                 D +I ++E+++
  KOO24625.1 746 DNRIQRDEWEK 756
                 889******86 PP

  == domain 3  score: 10.9 bits;  conditional E-value: 0.0001
                 HHHHHH-SS-SSCE-HHHH CS
   EF-hand_5   3 dtFqaiDlNgDGkIskeEL 21 
                 d F+ iD+N+ G+Is+ E+
  KOO24625.1 781 D-FDVIDKNRGGHISFPEF 798
                 6.****************9 PP

>> EF-hand_7  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.9   0.0   4.6e-05      0.12      36      65 ..     604     633 ..     579     637 .. 0.74
   2 ?    1.1   0.0      0.21   5.4e+02      55      67 ..     688     700 ..     684     704 .. 0.85
   3 !   11.9   0.0   9.1e-05      0.23      50      70 ..     782     802 ..     745     803 .. 0.90

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 4.6e-05
   EF-hand_7  36 gegsklsdeelellfkefDtdkdGvisfdE 65 
                 + +++ +    + lf+ fD +++G+is+ E
  KOO24625.1 604 EKDNEEHARMRQVLFDRFDANHNGYISLAE 633
                 444444444588999999999999999887 PP

  == domain 2  score: 1.1 bits;  conditional E-value: 0.21
   EF-hand_7  55 tdkdGvisfdEFl 67 
                 +d+d+++++ EF+
  KOO24625.1 688 LDDDDYVTRPEFR 700
                 799*********7 PP

  == domain 3  score: 11.9 bits;  conditional E-value: 9.1e-05
   EF-hand_7  50 fkefDtdkdGvisfdEFlkly 70 
                 f+ +D+++ G isf EF+++ 
  KOO24625.1 782 FDVIDKNRGGHISFPEFCEWL 802
                 6779**************996 PP

>> EF-hand_8  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.7   0.0   3.3e-05     0.085      29      47 ..     615     633 ..     615     634 .. 0.95
   2 ?   -3.4   0.0       3.5     9e+03      38      48 ..     689     699 ..     688     700 .. 0.79
   3 !    8.8   0.0   0.00055       1.4      32      52 ..     782     802 ..     782     804 .. 0.90

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 3.3e-05
   EF-hand_8  29 dilfrefDtdgdGkisfeE 47 
                 ++lf++fD +++G+is+ E
  KOO24625.1 615 QVLFDRFDANHNGYISLAE 633
                 79**************998 PP

  == domain 2  score: -3.4 bits;  conditional E-value: 3.5
   EF-hand_8  38 dgdGkisfeEF 48 
                 d+d +++  EF
  KOO24625.1 689 DDDDYVTRPEF 699
                 88889998888 PP

  == domain 3  score: 8.8 bits;  conditional E-value: 0.00055
   EF-hand_8  32 frefDtdgdGkisfeEFcvll 52 
                 f+ +D ++ G+isf EFc+ l
  KOO24625.1 782 FDVIDKNRGGHISFPEFCEWL 802
                 899***************865 PP

>> SHOCT  Short C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.1   0.3     0.016        42       2      19 ..     386     403 ..     385     403 .. 0.93
   2 ?    6.5   0.9    0.0028       7.1       2      19 ..     438     455 ..     437     455 .. 0.95
   3 ?    6.8   0.8    0.0022       5.6       2      19 ..     470     487 ..     469     487 .. 0.95
   4 ?   -1.3   0.1      0.77     2e+03       8      19 ..     530     541 ..     529     541 .. 0.85
   5 ?   -2.9   0.0       2.5   6.3e+03      17      27 ..     607     617 ..     606     617 .. 0.85

  Alignments for each domain:
  == domain 1  score: 4.1 bits;  conditional E-value: 0.016
       SHOCT   2 aLekLkeLyarGeIteEE 19 
                 +L++L+++ a+G +t +E
  KOO24625.1 386 RLAELRRRQAAGQLTNAE 403
                 89*************988 PP

  == domain 2  score: 6.5 bits;  conditional E-value: 0.0028
       SHOCT   2 aLekLkeLyarGeIteEE 19 
                 +L++L+++ a+G +t++E
  KOO24625.1 438 RLAELRRRQAAGQLTDAE 455
                 89**************99 PP

  == domain 3  score: 6.8 bits;  conditional E-value: 0.0022
       SHOCT   2 aLekLkeLyarGeIteEE 19 
                 +L++L+++ a+G +t++E
  KOO24625.1 470 RLAELRKRQAAGQLTDAE 487
                 89**************99 PP

  == domain 4  score: -1.3 bits;  conditional E-value: 0.77
       SHOCT   8 eLyarGeIteEE 19 
                 ++ a+G +t++E
  KOO24625.1 530 RRQAAGQLTDAE 541
                 6779******99 PP

  == domain 5  score: -2.9 bits;  conditional E-value: 2.5
       SHOCT  17 eEEFeakKakL 27 
                  EE  ++++ L
  KOO24625.1 607 NEEHARMRQVL 617
                 69*****9987 PP

>> DehI  Halocarboxylic acid dehydrogenase DehI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.3   9.9     0.033        84       5      59 ..      13      75 ..      10     176 .. 0.64

  Alignments for each domain:
  == domain 1  score: 3.3 bits;  conditional E-value: 0.033
        DehI  5 fiFralAnypeflrlawqqlkpaletkeFeaaAaalreevls.dveeerkvasia.......l 59
                + +r +A     +++ w++l+ a +++++ea Aaal+++ l+ +ve+  ++a  +       l
  KOO24625.1 13 VAWREVARRTRMIAAQWKRLYIAEQSAAAEAKAAALQQKELRkKVEQDLNIALRQseaaaqsL 75
                789*********************************998765257777776665544444443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (821 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1304  (0.0727313); expected 358.6 (0.02)
Passed bias filter:                      475  (0.0264934); expected 358.6 (0.02)
Passed Vit filter:                        60  (0.00334653); expected 17.9 (0.001)
Passed Fwd filter:                        17  (0.000948185); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.76u 0.32s 00:00:01.08 Elapsed: 00:00:00.46
# Mc/sec: 5322.65
//
Query:       KOO24626.1  [L=326]
Description: putative calcium-binding protein cml20-like protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    3.2e-14   51.6   0.3    3.5e-06   26.5   0.0    2.9  2  EF-hand_6     EF-hand domain
    8.1e-13   46.9   0.4    5.3e-05   22.5   0.1    2.7  2  EF-hand_1     EF hand
    1.8e-10   41.1   0.2    1.8e-10   41.1   0.2    2.3  2  EF-hand_7     EF-hand domain pair
    1.2e-08   34.6   0.1    7.1e-07   29.0   0.1    1.9  2  EF-hand_8     EF-hand domain pair
      1e-07   31.1   0.3     0.0024   17.3   0.1    2.7  2  EF-hand_5     EF hand
     0.0062   16.9   0.1     0.0062   16.9   0.1    3.2  3  EF-hand_14    EF-hand domain
  ------ inclusion threshold ------
      0.072   13.7   0.0      0.072   13.7   0.0    3.4  1  PIG-L         GlcNAc-PI de-N-acetylase
       0.16   11.0   3.3         14    4.7   3.3    2.2  1  GATase_5      CobB/CobQ-like glutamine amidotransferase domai
       0.19   11.3  17.2       0.43   10.1  17.2    1.6  1  Exonuc_VII_L  Exonuclease VII, large subunit
       0.85    9.7  14.9       0.55   10.3   3.0    2.8  2  DUF1664       Protein of unknown function (DUF1664)
          2    8.8  37.1      0.062   13.7  26.3    2.6  3  Fez1          Fez1
        4.6    7.2  31.7    5.7e+02    0.4  31.7    2.4  1  Rootletin     Ciliary rootlet component, centrosome cohesion
        5.5    7.3   9.9       0.27   11.5   0.3    3.0  4  DUF3135       Protein of unknown function (DUF3135)


Domain annotation for each model (and alignments):
>> EF-hand_6  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.5   0.0   2.6e-09   3.5e-06       2      31 .]      48      76 ..      47      78 .. 0.92
   2 !   22.1   0.0   6.4e-08   8.8e-05       2      26 ..      84     108 ..      83     112 .. 0.91

  Alignments for each domain:
  == domain 1  score: 26.5 bits;  conditional E-value: 2.6e-09
   EF-hand_6  2 lreaFklfDkdgdGkidaeElrkalrkalg 31
                l+ +F+++D d +G+i+++E+r+al+  lg
  KOO24626.1 48 LKTLFEMWDEDASGTISQKEFRAALK-TLG 76
                889***********************.565 PP

  == domain 2  score: 22.1 bits;  conditional E-value: 6.4e-08
   EF-hand_6   2 lreaFklfDkdgdGkidaeElrkal 26 
                 ++++F+++Dkd++G++d++E++ka 
  KOO24626.1  84 MNALFDKLDKDKSGQVDYKEMVKAV 108
                 789******************9986 PP

>> EF-hand_1  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.0   0.0   5.4e-08   7.5e-05       2      29 .]      48      75 ..      47      75 .. 0.93
   2 !   22.5   0.1   3.9e-08   5.3e-05       3      26 ..      85     108 ..      83     110 .. 0.90

  Alignments for each domain:
  == domain 1  score: 22.0 bits;  conditional E-value: 5.4e-08
                HHHHHHHHTTTSSSEEEHHHHHHHHHHH CS
   EF-hand_1  2 lkeiFrefDkDgdGkIdfeEfkellkkl 29
                lk +F++ D D +G+I+ +Ef+++lk+l
  KOO24626.1 48 LKTLFEMWDEDASGTISQKEFRAALKTL 75
                7899*********************985 PP

  == domain 2  score: 22.5 bits;  conditional E-value: 3.9e-08
                 HHHHHHHTTTSSSEEEHHHHHHHH CS
   EF-hand_1   3 keiFrefDkDgdGkIdfeEfkell 26 
                 + +F+++DkD++G++d++E+++++
  KOO24626.1  85 NALFDKLDKDKSGQVDYKEMVKAV 108
                 679******************987 PP

>> EF-hand_7  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.1   0.2   1.3e-13   1.8e-10       2      70 ..      46     108 ..      45     109 .. 0.97
   2 ?   -1.2   0.5       2.2     3e+03      36      36 ..     254     254 ..     209     298 .. 0.59

  Alignments for each domain:
  == domain 1  score: 41.1 bits;  conditional E-value: 1.3e-13
   EF-hand_7   2 eklkeaFkelDtdgdgyldkeellrllrkifqgagegsklsdeelellfkefDtdkdGvisfdEFlkly 70 
                 eklk+ F++ D d +g +++ e++ +l+        g+  sd ++ +lf+++D+dk+G++++ E++k++
  KOO24626.1  46 EKLKTLFEMWDEDASGTISQKEFRAALK------TLGFTASDAHMNALFDKLDKDKSGQVDYKEMVKAV 108
                 79**********************9999......99******************************986 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 2.2
   EF-hand_7  36 g 36 
                 +
  KOO24626.1 254 R 254
                 1 PP

>> EF-hand_8  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.2   0.0   0.00019      0.26      27      53 ..      47      73 ..      44      75 .. 0.86
   2 !   29.0   0.1   5.2e-10   7.1e-07       2      52 ..      60     108 ..      59     109 .. 0.90

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00019
   EF-hand_8 27 evdilfrefDtdgdGkisfeEFcvlle 53
                ++ +lf   D+d +G+is++EF + l+
  KOO24626.1 47 KLKTLFEMWDEDASGTISQKEFRAALK 73
                567899999*************99886 PP

  == domain 2  score: 29.0 bits;  conditional E-value: 5.2e-10
   EF-hand_8   2 kgkItreelrrilrilglkkglseeevdilfrefDtdgdGkisfeEFcvll 52 
                 +g I++ e+r +l++lg     s+  + +lf+++D d++G ++++E +  +
  KOO24626.1  60 SGTISQKEFRAALKTLGFT--ASDAHMNALFDKLDKDKSGQVDYKEMVKAV 108
                 799**********999977..88888********************87765 PP

>> EF-hand_5  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.3   0.0   0.00014      0.19       1      23 [.      48      70 ..      48      73 .. 0.89
   2 !   17.3   0.1   1.7e-06    0.0024       1      21 [.      84     104 ..      84     108 .. 0.90

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00014
                HHHHHHHH-SS-SSCE-HHHHHH CS
   EF-hand_5  1 lkdtFqaiDlNgDGkIskeELkt 23
                lk +F++ D + +G+Is  E+++
  KOO24626.1 48 LKTLFEMWDEDASGTISQKEFRA 70
                6779999**************97 PP

  == domain 2  score: 17.3 bits;  conditional E-value: 1.7e-06
                 HHHHHHHH-SS-SSCE-HHHH CS
   EF-hand_5   1 lkdtFqaiDlNgDGkIskeEL 21 
                 ++++F+++D++++G+++  E 
  KOO24626.1  84 MNALFDKLDKDKSGQVDYKEM 104
                 689**************9997 PP

>> EF-hand_14  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   0.1   4.5e-06    0.0062       4      54 ..      50     100 ..      48     130 .. 0.85
   2 ?   -2.5   0.0         5     7e+03      80      88 ..     191     199 ..     158     200 .. 0.54
   3 ?   -0.6   1.7       1.3   1.7e+03      39      68 ..     265     288 ..     224     316 .. 0.62

  Alignments for each domain:
  == domain 1  score: 16.9 bits;  conditional E-value: 4.5e-06
  EF-hand_14   4 llfdlfkdeetdklsvakllkaLaetGirkdDpRLkellkklkkvekekse 54 
                  lf++++++ ++++s +++ +aL++ G + +D  ++ l++kl k +  + +
  KOO24626.1  50 TLFEMWDEDASGTISQKEFRAALKTLGFTASDAHMNALFDKLDKDKSGQVD 100
                 69****************************************998877653 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 5
  EF-hand_14  80 akaLknqlv 88 
                 +ka ++ql+
  KOO24626.1 191 SKAVQEQLI 199
                 455555555 PP

  == domain 3  score: -0.6 bits;  conditional E-value: 1.3
  EF-hand_14  39 kellkklkkvekekseaeesetleldretF 68 
                 +++ ++++++       ++ + +e++r + 
  KOO24626.1 265 EKMRQAFEQE------RQQWKAKEIERVEL 288
                 2222222222......23333344444443 PP

>> PIG-L  GlcNAc-PI de-N-acetylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.0   5.2e-05     0.072      29      84 ..      38      93 ..      29     111 .. 0.80

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 5.2e-05
                EEEECE--TT---STTTTHH-HHHHHHHHHHHHHHHHCTE..EEEEECCCBTT-ST CS
       PIG-L 29 kivcltaGdagsplatleekeelaeiRekEaraaakhlgvadedvffldfpDgsle 84
                + v++ +G++ ++l+++++++  ++i +kE raa+k lg +++d+++  + D+  +
  KOO24626.1 38 REVIMDNGEKLKTLFEMWDEDASGTISQKEFRAALKTLGFTASDAHMNALFDKLDK 93
                5588999*********************************9777776666665544 PP

>> GATase_5  CobB/CobQ-like glutamine amidotransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.7   3.3    0.0099        14      11      40 ..      61      90 ..      58     179 .. 0.66

  Alignments for each domain:
  == domain 1  score: 4.7 bits;  conditional E-value: 0.0099
    GATase_5 11 GvngeyemaaafekaGfeavdvhmsdlleg 40
                G+ ++ e  aa+++ Gf+a d hm+ l ++
  KOO24626.1 61 GTISQKEFRAALKTLGFTASDAHMNALFDK 90
                777888888888888888888888877543 PP

>> Exonuc_VII_L  Exonuclease VII, large subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1  17.2   0.00031      0.43     127     245 ..     148     295 ..     144     324 .. 0.46

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.00031
  Exonuc_VII_L 127 rapTPtaaAelvvpdkaeleeqleelerrlekaikrll...........................eekkqrleklasrl...kspeellerkrqrld 193
                    a+  ta+A +v + kae ++q++el+++le a +++                            +e + +l++l+++    +++++ ++r+ +rl+
    KOO24626.1 148 EAAISTAVAAAVEQAKAEAQQQVQELQEQLEAARASAGgaspaskavqeqlivieeekraikleaTELRDELDQLRRTTgklERSDAEYRRQLKRLE 244
                   566669**********************999987553333333333333335554444444444422223333333222111333333333333333 PP

  Exonuc_VII_L 194 eleerlera.lkkqlkkkrerleelkerl.kekleekkerlkklkerle...lleek 245
                   e    le++ l+++l++k+++le++++++ +e+ + k+++++++    e   ++++k
    KOO24626.1 245 EE--ALEAKaLREALEAKSAELEKMRQAFeQERQQWKAKEIERV----ElvqQVQQK 295
                   31..2221114444556666666666555333333333333222....111111111 PP

>> DUF1664  Protein of unknown function (DUF1664)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   3.0    0.0004      0.55      52     120 ..     154     222 ..     145     233 .. 0.64
   2 ?    4.5   3.8     0.025        34      37      95 ..     251     313 ..     247     321 .. 0.70

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.0004
     DUF1664  52 qvseslaatkrhLssridrvdkkldeqkeiskeikeevtevredlseigedvesvkeavegleskleri 120
                  v ++++++k + ++++++++++l++  + +   +   ++v+e+l  i+e+ +++k   ++l  +l+++
  KOO24626.1 154 AVAAAVEQAKAEAQQQVQELQEQLEAARASAGGASPASKAVQEQLIVIEEEKRAIKLEATELRDELDQL 222
                 466777788888888888888888877776666666666666666666666666665555555555554 PP

  == domain 2  score: 4.5 bits;  conditional E-value: 0.025
     DUF1664  37 rslsdavesvskqleqvseslaatkrhLs....sridrvdkkldeqkeiskeikeevtevred 95 
                 + l++a+e  s +le++ ++ ++ +++ +    +r++ v++ +++ +e s++ + ev++++e+
  KOO24626.1 251 KALREALEAKSAELEKMRQAFEQERQQWKakeiERVELVQQVQQKASEWSQQKAGEVKRIEEQ 313
                 678899999999999999888888877752111455555666666777777777777777665 PP

>> Fez1  Fez1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.9   7.0       0.2   2.7e+02      67     149 ..      83     182 ..      26     188 .. 0.58
   2 ?   13.7  26.3   4.5e-05     0.062      48     172 ..     164     286 ..     156     297 .. 0.74
   3 ?   -2.2   0.1       3.5   4.8e+03       6      18 ..     301     313 ..     296     316 .. 0.75

  Alignments for each domain:
  == domain 1  score: 1.9 bits;  conditional E-value: 0.2
        Fez1  67 elevcenelqrkkseaellrekvekleeelkelreelselsleeeeaalesdeakaqrqe...................aeeleelkreverlraeLke 146
                  ++ + ++l++ ks +   +e v+++e   k+ +e+++   +  ee  ++++ea + r++                   +++ +e +++v++l+++L+ 
  KOO24626.1  83 HMNALFDKLDKDKSGQVDYKEMVKAVEGAGKKGKEKIALERKLLEE--KRAREAAEARAAagggaaveaaistavaaavEQAKAEAQQQVQELQEQLEA 179
                 3444444555555554445555555555554444444332211111..122222222222566666666666666666667778889999999999998 PP

        Fez1 147 erq 149
                  r 
  KOO24626.1 180 ARA 182
                 876 PP

  == domain 2  score: 13.7 bits;  conditional E-value: 4.5e-05
        Fez1  48 eekeeeikeleesleektlelevcenelqrkkseaellrekvekleeelkelreelselsleeeeaalesdeakaqrqeaeeleelkreverlraeLke 146
                  e +++++el+e+le   ++        +  +++  +++e+ ++++ e +elr+el +l ++  + +le ++a+ +rq  ++lee+  e + lr++L+ 
  KOO24626.1 164 AEAQQQVQELQEQLEAARASAGGASPASKAVQEQLIVIEEEKRAIKLEATELRDELDQLRRT--TGKLERSDAEYRRQL-KRLEEEALEAKALREALEA 259
                 45566777777777777777666666666667777788888888899999999999886544..444566665666655.89999999*********** PP

        Fez1 147 erqkkeeqassFeqERrtWq.eeKekV 172
                 +  + e+++++FeqER++W+ +e e+V
  KOO24626.1 260 KSAELEKMRQAFEQERQQWKaKEIERV 286
                 *******************73677887 PP

  == domain 3  score: -2.2 bits;  conditional E-value: 3.5
        Fez1   6 cQksGEislLKqQ 18 
                 +Qk+GE+  + +Q
  KOO24626.1 301 QQKAGEVKRIEEQ 313
                 6999999777666 PP

>> Rootletin  Ciliary rootlet component, centrosome cohesion
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.4  31.7      0.41   5.7e+02      27     150 ..     165     296 ..      89     325 .. 0.58

  Alignments for each domain:
  == domain 1  score: 0.4 bits;  conditional E-value: 0.41
   Rootletin  27 qYkkrcseleqrllektselektkltlllssareleeeesadl...............................eealakLeeErqrseklaqvnslLr 94 
                 + +++++el+++l++                                                            e++ +L++ r+ + kl++  + +r
  KOO24626.1 165 EAQQQVQELQEQLEAA--------------------------RasaggaspaskavqeqlivieeekraikleaTELRDELDQLRRTTGKLERSDAEYR 237
                 2222333333333331..........................022222222222222223333333333344548999********************* PP

   Rootletin  95 eql...eearqaneaLtedlqkltkdwerlreeleqkekewreeeeafneylssehsrl 150
                  ql   ee+  + +aL+e l+  ++++e++r+  eq+ ++w+ +e +  e +++ +++ 
  KOO24626.1 238 RQLkrlEEEALEAKALREALEAKSAELEKMRQAFEQERQQWKAKEIERVELVQQVQQKA 296
                 *9733366777899*****************************9998888888877775 PP

>> DUF3135  Protein of unknown function (DUF3135)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.3   0.00019      0.27      20      58 ..     148     186 ..     145     200 .. 0.83
   2 ?   -1.7   0.0       2.7   3.7e+03      18      45 ..     218     243 ..     214     246 .. 0.68
   3 ?   -1.2   2.8       1.8   2.5e+03      17      35 ..     269     287 ..     238     302 .. 0.56
   4 ?   -0.4   1.6         1   1.4e+03      17      39 ..     269     291 ..     253     325 .. 0.75

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.00019
     DUF3135  20 ealrqelieelIesapeemqrrLrglqfqiDmqlsrakn 58 
                 ea+  +++ +++e+a++e q++ ++lq q++  +++a  
  KOO24626.1 148 EAAISTAVAAAVEQAKAEAQQQVQELQEQLEAARASAGG 186
                 6666788999***********************998865 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 2.7
     DUF3135  18 alealrqelieelIesapeemqrrLrgl 45 
                 +l++lr++  +  +e++ +e++r+L++l
  KOO24626.1 218 ELDQLRRTTGK--LERSDAEYRRQLKRL 243
                 56666665443..567777888888876 PP

  == domain 3  score: -1.2 bits;  conditional E-value: 1.8
     DUF3135  17 ealealrqelieelIesap 35 
                 +a+e+ rq+   + Ie+++
  KOO24626.1 269 QAFEQERQQWKAKEIERVE 287
                 3455555555555554443 PP

  == domain 4  score: -0.4 bits;  conditional E-value: 1
     DUF3135  17 ealealrqelieelIesapeemq 39 
                 +a+e+ rq+   + Ie+++  +q
  KOO24626.1 269 QAFEQERQQWKAKEIERVELVQQ 291
                 56777777777776666654444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (326 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      3483  (0.194266); expected 358.6 (0.02)
Passed bias filter:                      748  (0.0417201); expected 358.6 (0.02)
Passed Vit filter:                       132  (0.00736237); expected 17.9 (0.001)
Passed Fwd filter:                        52  (0.00290033); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 1.00u 0.34s 00:00:01.34 Elapsed: 00:00:00.49
# Mc/sec: 1994.52
//
Query:       KOO24627.1  [L=97]
Description: hypothetical protein Ctob_000659 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.5e-35  121.2   0.0    1.8e-35  120.9   0.0    1.1  1  Ribosomal_S21e  Ribosomal protein S21e


Domain annotation for each model (and alignments):
>> Ribosomal_S21e  Ribosomal protein S21e
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  120.9   0.0     1e-39   1.8e-35       2      74 ..      16      88 ..      15      90 .. 0.98

  Alignments for each domain:
  == domain 1  score: 120.9 bits;  conditional E-value: 1e-39
  Ribosomal_S21e  2 qndagelVdlYiPrkcsatnrlItakDhasvqinvaevdetGratgesttyalsgairrkGesddslnrlakk 74
                    +n++g+++dlYiPrkcsatnrlI+akD+as+qin+++v+++G++tge+tt+al+g+ir++Ge+d +l+rl++k
      KOO24627.1 16 HNSEGVNIDLYIPRKCSATNRLIEAKDKASIQINIGHVNADGVYTGEFTTMALCGFIRSMGEADGALDRLWTK 88
                    699********************************************************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (97 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       320  (0.0178482); expected 358.6 (0.02)
Passed bias filter:                      296  (0.0165096); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.35u 0.26s 00:00:00.61 Elapsed: 00:00:00.40
# Mc/sec: 722.33
//
Query:       KOO24628.1  [L=335]
Description: hypothetical protein Ctob_000658 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.4e-23   83.3   0.0    2.1e-23   82.8   0.0    1.3  1  Methyltransf_31  Methyltransferase domain
    2.1e-23   82.8   0.0    4.2e-23   81.8   0.0    1.5  1  Methyltransf_11  Methyltransferase domain
    2.2e-23   82.8   0.0      4e-23   81.9   0.0    1.5  1  Methyltransf_25  Methyltransferase domain
    3.8e-21   75.6   0.0      6e-21   75.0   0.0    1.2  1  Methyltransf_23  Methyltransferase domain
      8e-17   61.8   0.0    1.5e-16   60.9   0.0    1.5  1  Methyltransf_12  Methyltransferase domain
    2.4e-13   50.0   0.0    3.2e-13   49.6   0.0    1.1  1  CMAS             Mycolic acid cyclopropane synthetase
    3.1e-12   46.4   0.0    4.9e-12   45.7   0.0    1.2  1  Ubie_methyltran  ubiE/COQ5 methyltransferase family
    3.2e-08   32.6   0.0    4.8e-08   32.0   0.0    1.2  1  Methyltransf_29  Putative S-adenosyl-L-methionine-dependent m
    1.2e-06   28.1   0.0    0.00037   20.0   0.0    2.4  2  Methyltransf_4   Putative methyltransferase
    1.3e-05   24.8   0.0    2.4e-05   24.0   0.0    1.3  1  Methyltransf_PK  AdoMet dependent proline di-methyltransferas
    2.8e-05   23.7   0.0    5.6e-05   22.8   0.0    1.5  1  MTS              Methyltransferase small domain
    7.9e-05   22.5   0.0    0.00012   21.9   0.0    1.2  1  PCMT             Protein-L-isoaspartate(D-aspartate) O-methyl
    0.00013   21.5   0.0    0.00017   21.1   0.0    1.1  1  NAS              Nicotianamine synthase protein
    0.00017   21.5   0.0    0.00046   20.1   0.0    1.7  1  Methyltransf_8   Hypothetical methyltransferase
     0.0004   19.6   0.0    0.00091   18.4   0.0    1.5  2  DREV             DREV methyltransferase
     0.0013   18.7   0.0      0.002   18.1   0.0    1.3  1  Methyltransf_32  Methyltransferase domain
     0.0024   17.5   0.0     0.0038   16.8   0.0    1.2  1  MetW             Methionine biosynthesis protein MetW
     0.0086   15.7   0.0      0.013   15.1   0.0    1.2  1  NodS             Nodulation protein S (NodS)
  ------ inclusion threshold ------
      0.012   15.6   0.0      0.025   14.6   0.0    1.5  1  ADH_zinc_N       Zinc-binding dehydrogenase
      0.017   14.6   0.0      0.039   13.4   0.0    1.7  1  TehB             Tellurite resistance protein TehB
       0.02   14.2   0.0      0.053   12.8   0.0    1.6  1  Methyltransf_2   O-methyltransferase domain
      0.023   13.6   0.0       0.03   13.2   0.0    1.1  1  Methyltransf_9   Protein of unknown function (DUF1698)
      0.024   14.8   0.0      0.079   13.1   0.0    1.8  1  FtsJ             FtsJ-like methyltransferase
      0.086   12.2   0.0       0.14   11.6   0.0    1.2  1  DUF5305          Family of unknown function (DUF5305)
        0.1   12.3   0.0       0.17   11.6   0.0    1.3  1  DUF938           Protein of unknown function (DUF938)
       0.18   11.9   0.0       0.28   11.3   0.0    1.2  1  Shikimate_DH     Shikimate / quinate 5-dehydrogenase
       0.22   11.0   0.0        6.8    6.1   0.0    2.1  2  Methyltransf_5   MraW methylase family


Domain annotation for each model (and alignments):
>> Methyltransf_31  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   82.8   0.0   3.1e-26   2.1e-23       4     115 ..     112     220 ..     109     268 .. 0.89

  Alignments for each domain:
  == domain 1  score: 82.8 bits;  conditional E-value: 3.1e-26
  Methyltransf_31   4 glrvlDlGCGtGeltfelaeelgpkaevvGiDiseeaielArenaqklgldnveFeqgdieeleklledekfDlilsnevlnaladpdkileei 97 
                       l+vlD+GCG G  +  +a + +pka+v+Gi is+e  ++A++ a++ g++n++Fe++d+ ++   +ed++fDl+ + e   +++d+ k+ ee+
       KOO24628.1 112 PLKVLDVGCGIGGTSRYIA-KKFPKATVTGITISPEQQRRATALAAERGVSNAKFEVCDALDMT--YEDNTFDLVWACESGEHMPDKVKYVEEM 202
                      579****************.889*****************************************..***********9999************* PP

  Methyltransf_31  98 ervlkpggilliedprll 115
                       rvlkpgg+++i++ +  
       KOO24628.1 203 ARVLKPGGRIVIATWCQR 220
                      ************998833 PP

>> Methyltransf_11  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   81.8   0.0   6.3e-26   4.2e-23       1      96 []     116     214 ..     116     214 .. 0.98

  Alignments for each domain:
  == domain 1  score: 81.8 bits;  conditional E-value: 6.3e-26
                      EEET-TTSHHHHHHHHTT..SEEEEEES-HHHHHHHHHHCCHHT-.EEEETTEECCCTSS-TT-EEEEEEES-CCC-CCHHHHHHHHHHHEEEE CS
  Methyltransf_11   1 LdvGcGtGrlaealakrg..arvvgvDlskemlklakekaseegl.kvefvvadaeklpfednsfDlvvssevlhhvedpekalkeiaRvLkpg 91 
                      LdvGcG G  ++++ak++  a+v+g+ +s+e+ ++a + a e+g+ + +f v+da ++ +edn+fDlv++ e+ +h++d  k+++e+aRvLkpg
       KOO24628.1 116 LDVGCGIGGTSRYIAKKFpkATVTGITISPEQQRRATALAAERGVsNAKFEVCDALDMTYEDNTFDLVWACESGEHMPDKVKYVEEMARVLKPG 209
                      8**************9999***************************99********************************************** PP

                      EEEEE CS
  Methyltransf_11  92 Gllvi 96 
                      G++vi
       KOO24628.1 210 GRIVI 214
                      **986 PP

>> Methyltransf_25  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   81.9   0.0     6e-26     4e-23       1      97 []     115     210 ..     115     210 .. 0.97

  Alignments for each domain:
  == domain 1  score: 81.9 bits;  conditional E-value: 6e-26
                      EEEET-TTSHHHHHHHCTSTSSEEEEEESSHHHHHHHHHHHHHTTT.TEEEEESBCCGBSSSTTTEEEEEEESTGGGSSHHHHHHHHHHHHHHE CS
  Methyltransf_25   1 vLdlGcGtGrltlalakrlgkakvtgvDiseemleaareraeeegl.nvefvqgdaedlpfedgsfDlvvssgalhhlsdedlekalkeiarvL 93 
                      vLd+GcG G +++++ak+++ka+vtg+ is+e+ ++a + a+e+g+ n++f+++da d+ +ed++fDlv+++ + +h++  d  k+++e+arvL
       KOO24628.1 115 VLDVGCGIGGTSRYIAKKFPKATVTGITISPEQQRRATALAAERGVsNAKFEVCDALDMTYEDNTFDLVWACESGEHMP--DKVKYVEEMARVL 206
                      9******************99**************************************************88899987..678********** PP

                      EEEE CS
  Methyltransf_25  94 kpgG 97 
                      kpgG
       KOO24628.1 207 KPGG 210
                      ***9 PP

>> Methyltransf_23  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   75.0   0.0     9e-24     6e-21       8     159 ..      98     261 ..      89     262 .. 0.88

  Alignments for each domain:
  == domain 1  score: 75.0 bits;  conditional E-value: 9e-24
  Methyltransf_23   8 elsdklerllpklraggrvLdiGcGtGillevlrengf..svtgvDlspeaveiae......kakkaqkdqfdeqeaaepqgkfdlIvlrevle 93 
                       + dk +++++  +a+ +vLd+GcG G +++++++++   +vtg+ +spe++ +a       + ++a+++  d+ + ++++++fdl+ + e+ e
       KOO24628.1  98 DFIDKMLEFSQ-AQAPLKVLDVGCGIGGTSRYIAKKFPkaTVTGITISPEQQRRATalaaerGVSNAKFEVCDALDMTYEDNTFDLVWACESGE 190
                      45566677775.89999****************88876689*************999999999999999999999999**************** PP

  Methyltransf_23  94 hvpdppellrqiatllkpgGylllseplasl.......kedrllldwlylvpagrhisffsarslkelleeaG 159
                      h+pd  +++  +a+ lkpgG++++ ++ ++        + +r+ ld+ly     +h +f+s +++++++++ G
       KOO24628.1 191 HMPDKVKYVEEMARVLKPGGRIVIATWCQREegdkpftPKERDTLDYLYGE--WTHPYFISIEEYGRIMQRTG 261
                      ***************************888788888766666666666644..49***************988 PP

>> Methyltransf_12  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.9   0.0   2.3e-19   1.5e-16       1      99 []     116     212 ..     116     212 .. 0.84

  Alignments for each domain:
  == domain 1  score: 60.9 bits;  conditional E-value: 2.3e-19
  Methyltransf_12   1 LeiGcGtGsllralleklpdieytgvDispsaiedakeklakrennnnnnvelealdlldldgg.ssfDlvvasnvlhhlkdirevldnirklL 93 
                      L++GcG G ++r++++k+p +++tg+ isp++  ++++ la++++ +  n ++e++d+ld   + ++fDlv+a++  +h++d+ +++++++++L
       KOO24628.1 116 LDVGCGIGGTSRYIAKKFPKATVTGITISPEQQ-RRATALAAERGVS--NAKFEVCDALDMTYEdNTFDLVWACESGEHMPDKVKYVEEMARVL 206
                      8********************************.7777777777655..44444444444443346**************************** PP

  Methyltransf_12  94 kpgGrl 99 
                      kpgGr+
       KOO24628.1 207 KPGGRI 212
                      ****96 PP

>> CMAS  Mycolic acid cyclopropane synthetase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.6   0.0   4.8e-16   3.2e-13      45     175 ..      94     225 ..      88     282 .. 0.84

  Alignments for each domain:
  == domain 1  score: 49.6 bits;  conditional E-value: 4.8e-16
                 HHHHHHHHHHHTTTT--TT-EEEEES-TTSHHHHHHHHHH.--EEEEEES-HHHHHHHHHHHHTS-SSS-EEEEES-GGG---...--SEEEEES-GGG CS
        CMAS  45 eAqlaKldlileklelkpGmtlLdiGcGWGslvrravery.dvkvvglTlSkeqaklakkrvdeldlerkvevklldyedlde...kvdrvvsvgafeh 139
                 eA+++ +d +le  + ++  ++Ld+GcG G++ r+ ++++  + v g+T+S eq+++a +  +e+++++ ++ +++d  d+      +d v + +  eh
  KOO24628.1  94 EAKYDFIDKMLEFSQAQAPLKVLDVGCGIGGTSRYIAKKFpKATVTGITISPEQQRRATALAAERGVSN-AKFEVCDALDMTYednTFDLVWACESGEH 191
                 7888889999999999999*********************6799********************99754.55666666666433449************ PP

                 TSGGGHHHHHHHHHHHS-TT-EEEEEEEEE--HHHH CS
        CMAS 140 vgkenydtffkklkkllkedGllllhtitslhkkel 175
                 +  +   ++++++ ++lk++G++++ t  ++++  +
  KOO24628.1 192 MPDK--VKYVEEMARVLKPGGRIVIATWCQREEGDK 225
                 9876..58*****************99887776555 PP

>> Ubie_methyltran  ubiE/COQ5 methyltransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.7   0.0   7.3e-15   4.9e-12      38     152 ..     102     215 ..      94     223 .. 0.91

  Alignments for each domain:
  == domain 1  score: 45.7 bits;  conditional E-value: 7.3e-15
                      HHHHH--S--TTEEEEES-TT-HHHHHHHHHHHHHHEEEEEES-HHHHHHHHHHHHHHTSSTEEEEE--TTT-TTS-T-EEEEEEES-GGG-S- CS
  Ubie_methyltran  38 fveklvavkrgakvlDvagGtgDlafklsdsvgekgkvvvlDinenmLkvgekklkeegkinieflqanaeeLpfeddsfDvvtvsfGlrnvtD 131
                      ++ + +  + + kvlDv +G g  +  ++++   k +v+++ i+++  + + + + e+g++n +f + +a ++ +ed++fD+v        ++D
       KOO24628.1 102 KMLEFSQAQAPLKVLDVGCGIGGTSRYIAKKF-PKATVTGITISPEQQRRATALAAERGVSNAKFEVCDALDMTYEDNTFDLVWACESGEHMPD 194
                      556677788999***********999888886.5789**********************************************9999999**** PP

                      HHHHHHHHHHHEEEEEEEEEE CS
  Ubie_methyltran 132 klkaLkeayrvlkpGGrlvvl 152
                      k k ++e+ rvlkpGGr+v+ 
       KOO24628.1 195 KVKYVEEMARVLKPGGRIVIA 215
                      *****************9975 PP

>> Methyltransf_29  Putative S-adenosyl-L-methionine-dependent methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.0   0.0   7.2e-11   4.8e-08      90     219 ..      88     216 ..      79     236 .. 0.75

  Alignments for each domain:
  == domain 1  score: 32.0 bits;  conditional E-value: 7.2e-11
  Methyltransf_29  90 ggtqfkkgadkYidklaelipliaaggkvrtvlDvGCgvasfgayllsr....dvltlslapkDeheaqvqfaLeRgvp.ailavlgtkrlpyP 178
                      gg  f +   ++idk+ e  ++    +   +vlDvGCg+   + y+ ++     v+ + ++p+ + +a   +a eRgv  a   v  +  ++y 
       KOO24628.1  88 GGKDFIEAKYDFIDKMLEFSQA----QAPLKVLDVGCGIGGTSRYIAKKfpkaTVTGITISPEQQRRAT-ALAAERGVSnAKFEVCDALDMTYE 176
                      5556666666666655555444....445569*****998766666543222378899****9988876.6899****63789999******** PP

  Methyltransf_29 179 srsfdlihCsrCridwteedgilllevdRvlRpgGyfvlsa 219
                       ++fdl+       ++  ++ +++ e+ Rvl+pgG  v+++
       KOO24628.1 177 DNTFDLVWACESG-EHMPDKVKYVEEMARVLKPGGRIVIAT 216
                      ******9865544.56677889*************999876 PP

>> Methyltransf_4  Putative methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.0   0.0   5.5e-07   0.00037       5      63 ..     115     173 ..     111     182 .. 0.92
   2 ?    5.4   0.0     0.017        11      98     117 ..     197     216 ..     195     222 .. 0.90

  Alignments for each domain:
  == domain 1  score: 20.0 bits;  conditional E-value: 5.5e-07
                     EEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHCTTSSEEEEES-CCCH CS
  Methyltransf_4   5 vleiGcGkGeflvalAkknPdknflGiEirvkvvakvlkkiealelkNlrilrgdalkv 63 
                     vl++GcG G+    +Akk+P+ ++ Gi i+ +  +++ + +++++++N +    dal++
      KOO24628.1 115 VLDVGCGIGGTSRYIAKKFPKATVTGITISPEQQRRATALAAERGVSNAKFEVCDALDM 173
                     89**********************************************99999999664 PP

  == domain 2  score: 5.4 bits;  conditional E-value: 0.017
                     HHHHHHHHHEEEEEEEEEEE CS
  Methyltransf_4  98 ellkelarvLkkgGvlelaT 117
                     + ++e+arvLk+gG +++aT
      KOO24628.1 197 KYVEEMARVLKPGGRIVIAT 216
                     6799*************999 PP

>> Methyltransf_PK  AdoMet dependent proline di-methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.0   0.0   3.6e-08   2.4e-05      37     166 ..      95     221 ..      75     232 .. 0.77

  Alignments for each domain:
  == domain 1  score: 24.0 bits;  conditional E-value: 3.6e-08
  Methyltransf_PK  37 gsrkflkklkkeslpgkrevkvaldcGaGiGrvtknlLlkllskvDlve.pvekflekakeelaeekk.kvgkvyvvglqeftPeegrYdliWi 128
                      +   f++k+++    +++  + +ld+G+GiG  ++ +  k + k  +    ++   ++  + la e+    +k+ v+   + t e++ +dl+W 
       KOO24628.1  95 AKYDFIDKMLEF--SQAQAPLKVLDVGCGIGGTSRYIA-KKFPKATVTGiTISPEQQRRATALAAERGvSNAKFEVCDALDMTYEDNTFDLVWA 185
                      455677777765..56888899*********9776665.55555555541455566666677887655144556677889************** PP

  Methyltransf_PK 129 qWcvghLtDedlvaflkrckkalkpnGlivvkenvake 166
                           h++D+  v++++  ++ lkp+G iv+     +e
       KOO24628.1 186 CESGEHMPDK--VKYVEEMARVLKPGGRIVIATWCQRE 221
                      **99****98..9*****************98766555 PP

>> MTS  Methyltransferase small domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.8   0.0   8.4e-08   5.6e-05      30     136 ..     110     213 ..      92     220 .. 0.76

  Alignments for each domain:
  == domain 1  score: 22.8 bits;  conditional E-value: 8.4e-08
                 CTCSEEEEET-TTSHHHHHHHHHTTC.EEEEEESBHHHHHHHHHHHHHTTGC.EEEEE-STTTTS.TTS-EEEEEE---STTTCHCHHHHHHHHHHHHH CS
         MTS  30 elsgkvlDlGcGaGvlgaalakespeaevtlvdvdarAlesakenleankle.vevvasdvleev.eekkfdlivsNPPfhagkatelavaeeliaeAk 126
                 ++  kvlD+GcG+G  +  +ak+ p+a+vt + ++ +  + a++ +++ +++ +++  +d+l+ + e++ fdl+       +g+++ ++   + ++e +
  KOO24628.1 110 QAPLKVLDVGCGIGGTSRYIAKKFPKATVTGITISPEQQRRATALAAERGVSnAKFEVCDALDMTyEDNTFDLVWA---CESGEHMPDK--VKYVEEMA 203
                 45558***************************99999999999999999998899999999986515889999865...2344443322..34566666 PP

                 HHEEEEEEEE CS
         MTS 127 eaLkegGeLl 136
                 ++Lk+gG+++
  KOO24628.1 204 RVLKPGGRIV 213
                 6666666665 PP

>> PCMT  Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.9   0.0   1.8e-07   0.00012      63     171 ..     101     214 ..      89     232 .. 0.88

  Alignments for each domain:
  == domain 1  score: 21.9 bits;  conditional E-value: 1.8e-07
                 HHHHHHTT--TT-EEEEES-TTSHHHHHHHHHHCTTCEEEEEESBHHHHHHHHHHHHHCTTCSEEEEES-GGGTTGGG-SEEEEEESSBBSS--..... CS
        PCMT  63 alalellelkkgarvLevGsGsGyltavlarlvgekgrvvsierikelveeakrnlkkldlenvivvvgDGrkGyeekaPYdaihvgaaapeiP..... 156
                  ++le+ + ++  +vL+vG+G G  +  +a+ + + + v +i  ++e +++a++   + +++n ++ v D      e   +d ++   + +++P     
  KOO24628.1 101 DKMLEFSQAQAPLKVLDVGCGIGGTSRYIAKKFPKAT-VTGITISPEQQRRATALAAERGVSNAKFEVCDALDMTYEDNTFDLVWACESGEHMPdkvky 198
                 579999999999*************999999997766.*********************************988888889**************44444 PP

                 .HHHHHTEEEEEEEEE CS
        PCMT 157 .ealidQLkeGGrlvv 171
                  e++ + Lk+GGr+v+
  KOO24628.1 199 vEEMARVLKPGGRIVI 214
                 4457889*******98 PP

>> NAS  Nicotianamine synthase protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.1   0.0   2.5e-07   0.00017     116     228 ..     107     214 ..      85     234 .. 0.85

  Alignments for each domain:
  == domain 1  score: 21.1 bits;  conditional E-value: 2.5e-07
         NAS 116 kvtevPtkvaFiGsGPlPltslvlaskhlsktifdnlDkdglandkasklvsadedlssrmsfhtadvldvteelkaydvvflAAlvGmakeeKakvie 214
                   +++P kv  +G G +  ts  +a+k+ +k++++ + + ++ + +a++l + ++++s+  +f+  d+ld+t e + +d+v+ A   G +  +K+k +e
  KOO24628.1 107 SQAQAPLKVLDVGCG-IGGTSRYIAKKF-PKATVTGITISPEQQRRATALAA-ERGVSN-AKFEVCDALDMTYEDNTFDLVW-ACESGEHMPDKVKYVE 200
                 445688999999998.667887777765.7788999***********98877.778865.69*******************9.899************* PP

         NAS 215 hlakkmakGavlvl 228
                  +a+++++G ++v+
  KOO24628.1 201 EMARVLKPGGRIVI 214
                 **********9987 PP

>> Methyltransf_8  Hypothetical methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.1   0.0   6.9e-07   0.00046     104     162 ..     161     220 ..      97     231 .. 0.83

  Alignments for each domain:
  == domain 1  score: 20.1 bits;  conditional E-value: 6.9e-07
                     SSTTEEES-TTS-S--TT-EEEEEEES--.-SS-HHHHHHHHHHHEEEEEEEEEEEEGGG CS
  Methyltransf_8 104 vnervvacdlakvPledesvdvavfclsl.mgtnladflkeanrvlkvGGllkvaevksr 162
                      n + ++cd   +  ed++ d++  c s     +  ++++e+ rvlk+GG + +a    r
      KOO24628.1 161 SNAKFEVCDALDMTYEDNTFDLVWACESGeHMPDKVKYVEEMARVLKPGGRIVIATWCQR 220
                     578899********************9952334667899***************976555 PP

>> DREV  DREV methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.4   0.0   1.4e-06   0.00091      89     187 ..     106     215 ..      86     218 .. 0.82
   2 ?   -3.4   0.0       6.3   4.2e+03      55      70 ..     312     327 ..     299     329 .. 0.76

  Alignments for each domain:
  == domain 1  score: 18.4 bits;  conditional E-value: 1.4e-06
        DREV  89 pasdqedkklldlGaGdGeitkrvaptfee.............vyatelsetmrdrlkkkkynvlsalelqetdvkldlilclnlldrcfdplklledi 174
                 ++  q + k+ld+G G G  ++ +a+ f +               at l+      ++  k++v  al++   d  +dl+ + +  + + d +k +e++
  KOO24628.1 106 FSQAQAPLKVLDVGCGIGGTSRYIAKKFPKatvtgitispeqqRRATALAA--ERGVSNAKFEVCDALDMTYEDNTFDLVWACESGEHMPDKVKYVEEM 202
                 34567899********************99776666555544433443333..3457899*************************************** PP

        DREV 175 rsalepngrviva 187
                   +l+p gr+++a
  KOO24628.1 203 ARVLKPGGRIVIA 215
                 ***********98 PP

  == domain 2  score: -3.4 bits;  conditional E-value: 6.3
        DREV  55 fmsktdinGllgrGsm 70 
                 +m ++  nGl+++G m
  KOO24628.1 312 IMHRAFTNGLMQYGMM 327
                 7888889999999988 PP

>> Methyltransf_32  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.1   0.0     3e-06     0.002       6      82 ..      93     163 ..      91     208 .. 0.86

  Alignments for each domain:
  == domain 1  score: 18.1 bits;  conditional E-value: 3e-06
  Methyltransf_32   6 verlaelvakllkelakesgaltvvDvGaGkgYLsfvlalkeke.yklkvvgidakeelvekaekraeklgkkfnkrl 82 
                      +e  + +++k+l+  ++++++l+v+DvG+G g  s+ +a    +  k  v+gi ++ e  ++a ++a++ g  + ++ 
       KOO24628.1  93 IEAKYDFIDKMLEF-SQAQAPLKVLDVGCGIGGTSRYIAK---KfPKATVTGITISPEQQRRATALAAERG--V-SNA 163
                      5677899***9999.69999******************99...5479********************9999..3.333 PP

>> MetW  Methionine biosynthesis protein MetW
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   0.0   5.7e-06    0.0038      15     101 ..     113     205 ..      98     216 .. 0.74

  Alignments for each domain:
  == domain 1  score: 16.8 bits;  conditional E-value: 5.7e-06
        MetW  15 srvldlGcGdGellellkee...kqvdgrGl..eldeegvaecvakGlsviqgdldkdle.nfedksfdyvvlsqtlqatrnpkevldellri 101
                  +vld+GcG G   ++++++     v+g  +  e+++++ a + ++G+s  + ++ + l+ ++ed++fd+v    +   + +  + ++e+ r+
  KOO24628.1 113 LKVLDVGCGIGGTSRYIAKKfpkATVTGITIspEQQRRATALAAERGVSNAKFEVCDALDmTYEDNTFDLVWACESGEHMPDKVKYVEEMARV 205
                 58*******998888776542214566655554566677788889*********99999736********98877776666666667777776 PP

>> NodS  Nodulation protein S (NodS)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.0     2e-05     0.013      32     144 ..     101     214 ..      91     221 .. 0.81

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 2e-05
        NodS  32 aqilrlslaqgsiadalevGcaaGalterlapyckrltv..vdvveeaiararerv..kesshiswivsdvqqfst.dekfdlivvaevlyyiedvael 125
                  ++l++s aq  + ++l+vGc  G  +  +a    + tv  + + +e   ra      + +s+ ++ v+d   +   d+ fdl+  +e   ++ d+++ 
  KOO24628.1 101 DKMLEFSQAQAPL-KVLDVGCGIGGTSRYIAKKFPKATVtgITISPEQQRRATALAaeRGVSNAKFEVCDALDMTYeDNTFDLVWACESGEHMPDKVKY 198
                 5899***999998.69***************9988877733566677766665543115689999*****9999852678*********9999999874 PP

        NodS 126 raavrnlvsllapdgqlvf 144
                    v+++ ++l+p+g++v 
  KOO24628.1 199 ---VEEMARVLKPGGRIVI 214
                 ...8999999999999886 PP

>> ADH_zinc_N  Zinc-binding dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.6   0.0   3.7e-05     0.025       2      90 ..     122     217 ..     121     244 .. 0.79

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 3.7e-05
                 HHHHHHHHHH.HTT-EEEEEESSHHHHHHHHHTTESEEEETTTCHHHHHHHHHTTTSSEEEEEESSC......SHHHHHHHHHCEEEEEEEEECSC CS
  ADH_zinc_N   2 vGlaavqlAk.alGaeviavdsseeklelakklGadevinykeadlverikeltggegvdvvfecvG......sgatleaalkllkpgGrlvvvGg 90 
                 +G     +Ak   +a+v+++ +s+e+ + a  l a++ + + + ++ +++ +  +++ +d+v  c          + +e+  ++lkpgGr+v+   
  KOO24628.1 122 IGGTSRYIAKkFPKATVTGITISPEQQRRATALAAERGVSNAKFEVCDALDMTYEDNTFDLVWACESgehmpdKVKYVEEMARVLKPGGRIVIATW 217
                 666666677734478*******************999999945499999999999********997734444444568889999*******99866 PP

>> TehB  Tellurite resistance protein TehB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.0   5.9e-05     0.039       6      51 ..      90     132 ..      86     243 .. 0.74

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 5.9e-05
                 CCHHHHHHT-----HHHHHHCCCS-S-EEEEES-TTSHHHHHHHHT CS
        TehB   6 edyfskkynltathsevveavkivkpgkvldlgcgqgrnslylsll 51 
                 +d+ + ky+       ++e  +   p kvld+gcg g  s y++ +
  KOO24628.1  90 KDFIEAKYDFIDK---MLEFSQAQAPLKVLDVGCGIGGTSRYIAKK 132
                 6888888888765...455556678*****************9854 PP

>> Methyltransf_2  O-methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0     8e-05     0.053      53     175 ..     102     225 ..      92     238 .. 0.69

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 8e-05
                     HHHHSS-GGG-SEEEEET-TTSHHHHHHHHH-TT-EEEEEE-HHHHHHHHHHS.-----TTEEEEES-TTTS-----SEEEEESSGGGS-HH.HH CS
  Methyltransf_2  53 kvleafdleglkslvDvGGGtGalakaivsayPtikvivfDlpeVveaAkehl.sageeervefvgGdffkdslPeaDaillkrvlhDwsde.kc 145
                     k+le ++ +   +++DvG G+G + + i++++P+ +v+   ++   ++  + l      ++ +f   d   d   e   + l++ +   ++  + 
      KOO24628.1 102 KMLEFSQAQAPLKVLDVGCGIGGTSRYIAKKFPKATVTGITISPEQQRRATALaAERGVSNAKFEVCDAL-DMTYEDNTFDLVWACESGEHMpDK 195
                     566666666666789********************99988886555544444423333455566666666.555667777788887755543244 PP

                     HHHHHHHHHH--TT-EEEEEE----TTS-- CS
  Methyltransf_2 146 vklLkrvkkalpagGkvivveavlgadpsg 175
                     vk ++++ + l++gG+++++     +++++
      KOO24628.1 196 VKYVEEMARVLKPGGRIVIATWCQREEGDK 225
                     567788888888888888877666665555 PP

>> Methyltransf_9  Protein of unknown function (DUF1698)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.0   4.6e-05      0.03     117     245 ..     113     248 ..      80     286 .. 0.70

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 4.6e-05
                     -EEEEET-TTSHHHHHHHHCT-.SEEEEE---HHHHHHHHHHHCCTTTTSSEEEE---GGGS-T---EEEEEEES-GGG-S-HHHHHHHHHCTEE CS
  Methyltransf_9 117 rtildvGcgnGyhlwrmvgega.klvvGidPselfliqfeavrkllgedqrahllplgieqlpeleafdtvfsmGvlyhrrsPldhllqlkdqlv 210
                      ++ldvGcg G     ++ + + ++v Gi  s        a+    g  + ++++  +++   e ++fd v++     h    +  + ++   l+
      KOO24628.1 113 LKVLDVGCGIGGTSRYIAKKFPkATVTGITISPEQQRRATALAAERGVSNAKFEVCDALDMTYEDNTFDLVWACESGEHMPDKVKYVEEMARVLK 207
                     469******9975533333333134556655555555666777777778888899889999999******************************* PP

                     EEEEEEEEEE-BSS-TT-EE--SS-......BTTBSS---E CS
  Methyltransf_9 211 kgGelvletlvieGdenavlvPedr......yakmrnvyfi 245
                      gG +v+ t     + ++ ++P++r      y++    yfi
      KOO24628.1 208 PGGRIVIATWCQREEGDKPFTPKERdtldylYGEWTHPYFI 248
                     *********99887777888888874444444555555555 PP

>> FtsJ  FtsJ-like methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.0   0.00012     0.079      13      60 ..     101     149 ..      92     228 .. 0.72

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 0.00012
                 HHHHT-S-TT-E...EEECT-TTSHHHHHHCCT.T.-SEEEEEESSSSHHH CS
        FtsJ  13 dekfklfkpgkt...vvDlgaaPGgwsqvllqrlgakgkvvavDlqpmapl 60 
                 d+  + f++ ++   v+D+g++ Gg s ++++++ + + v ++++ p +++
  KOO24628.1 101 DKMLE-FSQAQAplkVLDVGCGIGGTSRYIAKKFPK-ATVTGITISPEQQR 149
                 34444.333333455******************975.9*******998544 PP

>> DUF5305  Family of unknown function (DUF5305)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0    0.0002      0.14     113     165 ..      13      62 ..       5      66 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 0.0002
     DUF5305 113 lae.gilliilgllaliglvvlirriiftsskaekyelelekilkeYdewIvkg 165
                 la+ g+l+++++++al++++++++     +++   y++e + + +eYd w ++g
  KOO24628.1  13 LANrGMLGAVCAVVALAFAWLARVL----NTPSRVYDKEANSVGREYDAWTSEG 62 
                 45568999*************9777....66777****************8876 PP

>> DUF938  Protein of unknown function (DUF938)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   0.00025      0.17      24      86 ..     108     174 ..      96     190 .. 0.81

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 0.00025
      DUF938  24 ktte..rvLEiasGtGqHAvffApalpnlkwqpsdqdeelresiaawadelalsnlkpPl..eldvt 86 
                 +++   +vL+++ G G    ++A+++p+++       +e++   +a a+e ++sn k+ +  +ld+t
  KOO24628.1 108 QAQAplKVLDVGCGIGGTSRYIAKKFPKATVTGITISPEQQRRATALAAERGVSNAKFEVcdALDMT 174
                 3333459***********************999999998888999999999**99998773345555 PP

>> Shikimate_DH  Shikimate / quinate 5-dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   0.00042      0.28      19      99 ..     121     203 ..     106     214 .. 0.81

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00042
                   S-SHHHHHHHHHHHCCT-CEEEEEESSHHHHHHHHHHH..T.ET-EEEEGCGHHHHHHT-SEEEE-SSSSS-SB-HHHHHCCH CS
  Shikimate_DH  19 GaGemaelvakhLlakgvkkvvvaNRtlerakelaeel..kgeeiealkleelkellaeadvvisataseepilekeeveeal 99 
                   G G +++ +ak++ +++v+ +++   +++ra +la e   +++++e+++  +++   + +d+v ++ + e++  + + vee+ 
    KOO24628.1 121 GIGGTSRYIAKKFPKATVTGITISPEQQRRATALAAERgvSNAKFEVCDALDMTYEDNTFDLVWACESGEHMPDKVKYVEEMA 203
                   678999*****************************997335666777888888888888999999988888777777776665 PP

>> Methyltransf_5  MraW methylase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.1   0.0      0.01       6.8      11      62 ..     102     153 ..      98     180 .. 0.84
   2 ?    2.7   0.0      0.11        76     222     246 ..     198     222 ..     192     225 .. 0.89

  Alignments for each domain:
  == domain 1  score: 6.1 bits;  conditional E-value: 0.01
                     HHHHHT---TT-EEEES--TTSHHHHHHHTT--TTEEEEEES-HHHHHHHTT CS
  Methyltransf_5  11 evvellepkedgvyiDaTlGaggHsealLeqlselrligidrDksalarake 62 
                     +++e+ + ++    +D+  G gg s+++ +++++ +++gi + ++   ra++
      KOO24628.1 102 KMLEFSQAQAPLKVLDVGCGIGGTSRYIAKKFPKATVTGITISPEQQRRATA 153
                     556666667778889*************************999999998887 PP

  == domain 2  score: 2.7 bits;  conditional E-value: 0.11
                     HHHHHHHHEEEEEEEEEEESSHHHH CS
  Methyltransf_5 222 lleaalellakggrlavisFhSled 246
                      +e++ ++l++ggr+++ +++ +e+
      KOO24628.1 198 YVEEMARVLKPGGRIVIATWCQREE 222
                     5788999*************99986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (335 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       678  (0.0378158); expected 358.6 (0.02)
Passed bias filter:                      565  (0.0315132); expected 358.6 (0.02)
Passed Vit filter:                        71  (0.00396006); expected 17.9 (0.001)
Passed Fwd filter:                        27  (0.00150594); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              27  [number of targets reported over threshold]
# CPU time: 0.52u 0.30s 00:00:00.82 Elapsed: 00:00:00.44
# Mc/sec: 2304.16
//
Query:       KOO24629.1  [L=235]
Description: hypothetical protein Ctob_000655 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
     0.0032   17.5   0.5        0.2   11.8   0.0    3.1  3  TPR_2     Tetratricopeptide repeat
  ------ inclusion threshold ------
       0.02   14.8   2.4       0.11   12.4   0.4    2.7  2  TPR_10    Tetratricopeptide repeat
       0.02   15.1   0.1       0.75   10.2   0.0    2.8  3  TPR_8     Tetratricopeptide repeat
        1.8    7.5   8.8        2.7    7.0   0.1    2.2  2  SAP130_C  Histone deacetylase complex subunit SAP130 C-termin


Domain annotation for each model (and alignments):
>> TPR_2  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.1   0.0      0.12   5.5e+02       8      29 ..      30      51 ..      25      52 .. 0.88
   2 !   11.8   0.0   4.6e-05       0.2       5      33 ..     105     133 ..     103     134 .. 0.95
   3 ?    0.3   0.0      0.22   9.8e+02       4      21 ..     138     155 ..     136     160 .. 0.88

  Alignments for each domain:
  == domain 1  score: 1.1 bits;  conditional E-value: 0.12
       TPR_2  8 GlayyklgdyeeAleafekAle 29
                ++a++   ++++Al a e Ale
  KOO24629.1 30 ADALLCEFEPAQALSAIESALE 51
                7888899999********9997 PP

  == domain 2  score: 11.8 bits;  conditional E-value: 4.6e-05
       TPR_2   5 ynlGlayyklgdyeeAleafekAleldPn 33 
                 +n+++++  ++++ eA+e + ++++l+P+
  KOO24629.1 105 NNRACLLTCMDRFGEAEEELLQCVRLAPT 133
                 699*************************7 PP

  == domain 3  score: 0.3 bits;  conditional E-value: 0.22
       TPR_2   4 lynlGlayyklgdyeeAl 21 
                 ++nl+l+ ++ g+ + A+
  KOO24629.1 138 NFNLALLRWQVGEKDAAA 155
                 699**********99997 PP

>> TPR_10  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.4   2.4e-05      0.11       3      31 ..     102     130 ..     101     131 .. 0.91
   2 ?    1.0   0.1     0.095   4.3e+02       7      22 ..     140     155 ..     140     156 .. 0.92

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 2.4e-05
      TPR_10   3 sslnNLanalrqrgrydeAealleealai 31 
                 + +nN a++l+ + r+ eAe+ l +++++
  KOO24629.1 102 RRRNNRACLLTCMDRFGEAEEELLQCVRL 130
                 568***********************985 PP

  == domain 2  score: 1.0 bits;  conditional E-value: 0.095
      TPR_10   7 NLanalrqrgrydeAe 22 
                 NLa + +q+g+ d+A 
  KOO24629.1 140 NLALLRWQVGEKDAAA 155
                 99***********996 PP

>> TPR_8  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.2         4   1.8e+04       1      11 [.       7      17 ..       7      17 .. 0.80
   2 ?   10.2   0.0   0.00017      0.75       4      33 ..     104     133 ..     101     134 .. 0.89
   3 ?    1.7   0.0     0.085   3.8e+02       5      20 ..     139     154 ..     137     156 .. 0.92

  Alignments for each domain:
  == domain 1  score: -3.5 bits;  conditional E-value: 4
                CCHHHHHHHHH CS
       TPR_8  1 aeayynlgsiy 11
                a+a++ l +iy
  KOO24629.1  7 AHALLELLHIY 17
                57888899998 PP

  == domain 2  score: 10.2 bits;  conditional E-value: 0.00017
                 HHHHHHHHHHTT-HHHHHHHHHHHHHHHHH CS
       TPR_8   4 yynlgsiylklgdyeeAkeyyekaleldpd 33 
                  +n ++++  + ++ eA+e + ++++l+p+
  KOO24629.1 104 RNNRACLLTCMDRFGEAEEELLQCVRLAPT 133
                 57899999999*****************96 PP

  == domain 3  score: 1.7 bits;  conditional E-value: 0.085
                 HHHHHHHHHTT-HHHH CS
       TPR_8   5 ynlgsiylklgdyeeA 20 
                 +nl+++ ++ g++++A
  KOO24629.1 139 FNLALLRWQVGEKDAA 154
                 89************99 PP

>> SAP130_C  Histone deacetylase complex subunit SAP130 C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.2   5.2     0.017        77      95     158 ..      21      84 ..      16      87 .. 0.87
   2 ?    7.0   0.1   0.00061       2.7     353     393 ..      86     126 ..      84     130 .. 0.88

  Alignments for each domain:
  == domain 1  score: 2.2 bits;  conditional E-value: 0.017
    SAP130_C  95 paqaiptllaaaa.ppsqpsavlsalpaavavtppvpaslanvvasptqpaasstaaaavssvvp 158
                 +++a++ l+a a     +p+ +lsa+ +a++ tp v a +++   ++  pa + t+aaa +++ p
  KOO24629.1  21 HSAALSDLVADALlCEFEPAQALSAIESALE-TPRVTARVTTGFDTSHAPAVAHTPAAAHAPTAP 84 
                 678889988888768889***********98.89999999999999999*****99999998887 PP

  == domain 2  score: 7.0 bits;  conditional E-value: 0.00061
    SAP130_C 353 pkkkaaadddlhrineliqGnmqrckl.vmdqiteardsmlk 393
                 pk  aa+d dl r  el + n + c l  md+  ea + +l+
  KOO24629.1  86 PKASAATDADLRR-TELRRRNNRACLLtCMDRFGEAEEELLQ 126
                 8999*******88.69*********9946*******999886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (235 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       397  (0.0221429); expected 358.6 (0.02)
Passed bias filter:                      280  (0.0156172); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.42u 0.25s 00:00:00.67 Elapsed: 00:00:00.40
# Mc/sec: 1749.33
//
Query:       KOO24630.1  [L=84]
Description: hypothetical protein Ctob_007493, partial [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (84 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       169  (0.00942607); expected 358.6 (0.02)
Passed bias filter:                      149  (0.00831056); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.23s 00:00:00.57 Elapsed: 00:00:00.39
# Mc/sec: 646.56
//
Query:       KOO24631.1  [L=349]
Description: hypothetical protein Ctob_007490 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (349 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       311  (0.0173462); expected 358.6 (0.02)
Passed bias filter:                      190  (0.0105974); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.46u 0.28s 00:00:00.74 Elapsed: 00:00:00.45
# Mc/sec: 2321.21
//
Query:       KOO24632.1  [L=120]
Description: hypothetical protein Ctob_007491 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
     0.0029   16.6   1.4     0.0036   16.2   0.9    1.4  1  Sugar_tr        Sugar (and other) transporter
  ------ inclusion threshold ------
       0.23   10.4  14.6       0.07   12.0  10.1    1.9  2  MFS_1           Major Facilitator Superfamily
        1.2    9.1  11.6       0.78    9.7   0.3    3.2  3  Transport_MerF  Membrane transport protein MerF


Domain annotation for each model (and alignments):
>> Sugar_tr  Sugar (and other) transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.9     6e-07    0.0036      43      96 ..      57     110 ..      24     114 .. 0.78

  Alignments for each domain:
  == domain 1  score: 16.2 bits;  conditional E-value: 6e-07
                 H...HHHHHHHTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH-T CS
    Sugar_tr  43 essvlsglivsiflvGaiiGslfagllgdrfGRkkslliaavlfvigavlqaaa 96 
                  +s+l+g++  ++++ ++ G++f+g+l d +GR  + +++ v+++ +a l a+ 
  KOO24632.1  57 LASLLYGATSVFAVIAGASGQYFTGWLLDHYGRDFTPIFVLVVLIEAAGLVAWN 110
                 26899***********************************99999888877775 PP

>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.2   3.3     0.046   2.8e+02     134     165 ..      12      43 ..       1      49 [. 0.42
   2 ?   12.0  10.1   1.2e-05      0.07       6      86 ..      32     113 ..      28     119 .. 0.65

  Alignments for each domain:
  == domain 1  score: 0.2 bits;  conditional E-value: 0.046
       MFS_1 134 ailgpllggllasslgWravfyilaivsllaf 165
                 a+l +++gg+l+s    +a+f+ + ++s++a+
  KOO24632.1  12 ALLSAGVGGVLLSRDEAEALFIGAVGMSAFAA 43 
                 22333333333333335555555544444443 PP

  == domain 2  score: 12.0 bits;  conditional E-value: 1.2e-05
       MFS_1   6 flsalarsilgpalplalaedlgispseigllltl...yal.gaavaslplGrlsdrfGrrr..vlllglllfalglllllfasslw 86 
                 f+ a ++s++++a   + a+d  is+  ++ll+++   +a+ + a +++++G+l d +Gr    +++l +l+ a+g l+++  + +w
  KOO24632.1  32 FIGAVGMSAFAAAGYGCGAQD--ISARLASLLYGAtsvFAViAGASGQYFTGWLLDHYGRDFtpIFVLVVLIEAAG-LVAW--NRWW 113
                 566666666555555455566..88999999666633244434499999999999999988763555555555555.7777..6655 PP

>> Transport_MerF  Membrane transport protein MerF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.5       0.4   2.4e+03      27      34 ..       5      11 ..       4      19 .. 0.47
   2 ?    6.1   0.7    0.0017        10       6      17 ..      31      42 ..      30      46 .. 0.81
   3 ?    9.7   0.3   0.00013      0.78       3      17 ..      96     110 ..      92     113 .. 0.81

  Alignments for each domain:
  == domain 1  score: -1.5 bits;  conditional E-value: 0.4
  Transport_MerF 27 aLaifigL 34
                    +La+++ L
      KOO24632.1  5 LLAMLV-L 11
                    444443.2 PP

  == domain 2  score: 6.1 bits;  conditional E-value: 0.0017
  Transport_MerF  6 illGvvGLsAlv 17
                    +++G+vG+sA++
      KOO24632.1 31 LFIGAVGMSAFA 42
                    79*******985 PP

  == domain 3  score: 9.7 bits;  conditional E-value: 0.00013
  Transport_MerF   3 vLVillGvvGLsAlv 17 
                     vLV+l+++ GL A+ 
      KOO24632.1  96 VLVVLIEAAGLVAWN 110
                     699**********96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (120 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       563  (0.0314016); expected 358.6 (0.02)
Passed bias filter:                      329  (0.0183502); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.38u 0.26s 00:00:00.64 Elapsed: 00:00:00.40
# Mc/sec: 900.65
//
Query:       KOO24633.1  [L=82]
Description: hypothetical protein Ctob_007492 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (82 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       537  (0.0299515); expected 358.6 (0.02)
Passed bias filter:                      300  (0.0167327); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.22s 00:00:00.56 Elapsed: 00:00:00.37
# Mc/sec: 663.63
//
Query:       KOO24634.1  [L=674]
Description: hypothetical protein Ctob_007494 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.015   15.1  20.3       0.15   11.8   6.6    3.4  3  Mntp      Putative manganese efflux pump


Domain annotation for each model (and alignments):
>> Mntp  Putative manganese efflux pump
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.9   0.9   0.00027       4.9      64     112 ..     128     174 ..     120     212 .. 0.78
   2 ?    5.1   1.0   0.00098        18      75     103 ..     286     314 ..     271     325 .. 0.77
   3 ?   11.8   6.6   8.2e-06      0.15       8     133 ..     316     440 ..     312     446 .. 0.92

  Alignments for each domain:
  == domain 1  score: 6.9 bits;  conditional E-value: 0.00027
        Mntp  64 eeekkekeelslksllllaiatSiDAlavGlsLallkvnillavlliGl 112
                 + + +++++l++++ll++++  S+D lav +sL l ++ ++ ++ l+G+
  KOO24634.1 128 D-DGDAAKDLTARALLVVSVLGSLDDLAVQISLLLAGTFTWAQL-LLGV 174
                 3.333447999**********************99988665554.3443 PP

  == domain 2  score: 5.1 bits;  conditional E-value: 0.00098
        Mntp  75 lksllllaiatSiDAlavGlsLallkvni 103
                  ++ ++l+++ S D +a+G sL++ ++ +
  KOO24634.1 286 YRTAAVLSLGSSTDNFAIGASLGIAGLML 314
                 567889*****************997744 PP

  == domain 3  score: 11.8 bits;  conditional E-value: 8.2e-06
        Mntp   8 lkialifGlfqalmpliGwllGkllselieavdhwiafllLlllGlkmivealkeeeeekkekeelslksllllaiatSiDAlavGlsLallkvnilla 106
                 lk+ ++++  + + +l+  + G+++ ++ +++  wia+ ++++l ++   + +  e ++    + ++  + l la+   +  la G++ +++++  lla
  KOO24634.1 316 LKFNALIAAANGVGALVAAAGGHAIGQVADSFGLWIAASVFAYLAWQEGGSLWAGEPASPLL-KLAERGVALQLAVPMTLNNLAGGIAGGVVGIGPLLA 413
                 6788889999999999********************************99999999999997.5667788899************************** PP

        Mntp 107 vlliGlvtlvlsllGlllGrklgsllg 133
                  +   +++++++++G+++G++l s+l+
  KOO24634.1 414 GTSAFCASFAMMATGFFVGQRLHSVLR 440
                 ***99*****************99764 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (674 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       807  (0.0450109); expected 358.6 (0.02)
Passed bias filter:                      413  (0.0230353); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.63u 0.26s 00:00:00.89 Elapsed: 00:00:00.41
# Mc/sec: 4895.50
//
Query:       KOO24635.1  [L=216]
Description: hypothetical protein Ctob_007495 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    4.3e-08   33.1   2.1    5.7e-08   32.7   2.1    1.2  1  GCIP         Grap2 and cyclin-D-interacting
     0.0082   15.7   5.7      0.012   15.2   5.7    1.3  1  Mu-like_Pro  Mu-like prophage I protein
  ------ inclusion threshold ------
      0.034   14.2   0.1        0.1   12.7   0.1    1.7  1  NADH_4Fe-4S  NADH-ubiquinone oxidoreductase-F iron-sulfur bin
      0.048   13.9   5.9        1.4    9.1   0.7    2.9  3  I_LWEQ       I/LWEQ domain
      0.064   13.6   0.2        0.2   12.0   0.2    1.9  1  MbeB_N       MbeB-like, N-term conserved region
      0.069   12.9   0.2       0.18   11.6   0.2    1.8  1  MotA_ExbB    MotA/TolQ/ExbB proton channel family
       0.12   12.1   0.4       0.53   10.0   0.4    2.0  1  DUF842       Eukaryotic protein of unknown function (DUF842)


Domain annotation for each model (and alignments):
>> GCIP  Grap2 and cyclin-D-interacting
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.7   2.1   2.2e-11   5.7e-08      69     259 ..       7     182 ..       2     184 .. 0.79

  Alignments for each domain:
  == domain 1  score: 32.7 bits;  conditional E-value: 2.2e-11
                 HHHHHHHHHHHHHHH--.--------------HHHHHHHTTTTS-SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH....S------------------ CS
        GCIP  69 kevvdsvaqLleeivssepsqskeeetlistGvVWeaCdalkklpkdNktAilraieevlglvkDaleEmkelleeedeeedededdldddedeergnq 167
                 k+v   + ++l+ ++  ++ +sk+  +   +G+V ea+ al++l  +  +A  +a+++ + lv Dal+E+ e ++e   +  e+ d++++        +
  KOO24635.1   7 KRVCTACWRVLQGVLTILERSSKASVQPSDVGLVEEAVRALATLEVSGAGACKQALQNASRLVADALRELRESVDE---ALAEAADEEGNA------FE 96 
                 556666666777777766666667777777**********************************************...444444444444......34 PP

                 TTS--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--TT...-HHHHHHHHHHHHHHHHHHHHHHHHHSSS--HHHHHHHHHHHHHHHHHH CS
        GCIP 168 drklseeekevikavlkllkatvallkklsrsiteegkkdskeqvaqldklldlskeiseqvDdLaaslYPpqnisavkaqvekLasvlkkv 259
                 d+     + +v+ +  +ll+ t+  l  ++   t +  +++   +a l  l++++++++ qvD L++s   + +++av +++++L + l k+
  KOO24635.1  97 DEATVLTDSAVTTPLIALLQGTLDSLALAT---T-TALDQAAPDLA-LNPLITCAQAMAAQVDTLVSSCD-DEELEAVLEHAAALGKLLGKL 182
                 556677889999999999998887777553...3.34455567788.9********************97.999999999999998888876 PP

>> Mu-like_Pro  Mu-like prophage I protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   5.7   4.5e-06     0.012     149     267 ..      75     193 ..      20     211 .. 0.70

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 4.5e-06
  Mu-like_Pro 149 ellkkllaaLgleedateeqilaalkalkeekaavaealglkagaktaeasaevaaLsakavDlakyvpveaaqalqaelaalkakiaekeaealiek 246
                  el + + +aL  ++d++ ++++++ + l++ +   +  + l +g+  + a a+ +aL ++a+Dla    ++ aqa++a++ +l +  +++e+ea++e+
   KOO24635.1  75 ELRESVDEALAEAADEEGNAFEDEATVLTDSA-VTTPLIALLQGTLDSLALATTTALDQAAPDLALNPLITCAQAMAAQVDTLVSSCDDEELEAVLEH 171
                  33333333333333444444455554444444.55566677778888889999999*9999****9999***************************** PP

  Mu-like_Pro 247 AlkeGkltpalkd.waralakk 267
                  A + Gkl+  l++  a ++a k
   KOO24635.1 172 AAALGKLLGKLHSvLADQCALK 193
                  *******998877345566655 PP

>> NADH_4Fe-4S  NADH-ubiquinone oxidoreductase-F iron-sulfur binding region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.1   3.9e-05       0.1      18      83 ..      10      81 ..       8      83 .. 0.88

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 3.9e-05
                 -HHHHIIIIHHHHHHHHHTBT---HHHHHHHHHHHHHHS.....S--SST.HHHHHHHHHHHHHHHHHHHHH CS
  NADH_4Fe-4S 18 CtpCreGtkrllelleriaagegteedldlleelaetik.....gtslCa.lgdsaanpvlsalrkFreefe 83
                 Ct C   ++ +l +ler  + + +++d+ l+ee  + ++     g+++C+   ++a ++v +alr+ re ++
   KOO24635.1 10 CTACWRVLQGVLTILERSSKASVQPSDVGLVEEAVRALAtlevsGAGACKqALQNASRLVADALRELRESVD 81
                 ***************************999888888888666778****725699***********999887 PP

>> I_LWEQ  I/LWEQ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.1   0.0      0.39     1e+03      74     103 ..       2      31 ..       1      52 [. 0.75
   2 ?    9.1   0.7   0.00056       1.4      70     103 ..      58      91 ..      43     110 .. 0.77
   3 ?    6.2   0.3    0.0043        11      11      30 ..     142     161 ..     120     212 .. 0.76

  Alignments for each domain:
  == domain 1  score: -0.1 bits;  conditional E-value: 0.39
      I_LWEQ  74 LeaaskaVkkatkelvkavkeakekqeeee 103
                 L aa k V +a+ ++++ v ++ e+++++ 
  KOO24635.1   2 LPAARKRVCTACWRVLQGVLTILERSSKAS 31 
                 668899999999999999999998877753 PP

  == domain 2  score: 9.1 bits;  conditional E-value: 0.00056
      I_LWEQ  70 slkrLeaaskaVkkatkelvkavkeakekqeeee 103
                  +++L++as+ V++a +el ++v ea +++ +ee
  KOO24635.1  58 CKQALQNASRLVADALRELRESVDEALAEAADEE 91 
                 56799*****************999999888865 PP

  == domain 3  score: 6.2 bits;  conditional E-value: 0.0043
      I_LWEQ  11 LisAAkaVaaaanlLveaad 30 
                 Li +A+a+aa++++Lv+++d
  KOO24635.1 142 LITCAQAMAAQVDTLVSSCD 161
                 55555555555555555554 PP

>> MbeB_N  MbeB-like, N-term conserved region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.2     8e-05       0.2      16      45 ..      59      88 ..      57      90 .. 0.89

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 8e-05
      MbeB_N 16 keqaeSteemvksafekheksvkeaLkese 45
                k+  +  ++ v+ a++++++sv+eaL+e++
  KOO24635.1 59 KQALQNASRLVADALRELRESVDEALAEAA 88
                6777888999*****************986 PP

>> MotA_ExbB  MotA/TolQ/ExbB proton channel family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.2   6.9e-05      0.18       7      64 ..      66     118 ..      56     151 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 6.9e-05
                 HHHHHHHHHHHT-HHHHHHHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHH.HH CS
   MotA_ExbB   7 drilkaglqeklvdgaepeelrraleealsreeerlekglsilatigslaPllGLl.GT 64 
                 +r+++ +l+      + +e++++al ea+++e +  e ++++l   + ++Pl+ Ll GT
  KOO24635.1  66 SRLVADALR------ELRESVDEALAEAADEEGNAFEDEATVLTDSAVTTPLIALLqGT 118
                 444555555......5789***********************************98566 PP

>> DUF842  Eukaryotic protein of unknown function (DUF842)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   0.4   0.00021      0.53      52     106 ..      57     111 ..      53     177 .. 0.79

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.00021
      DUF842  52 kCseplqkaqkvvqqEleqfqerLqrcvmvCqdkakdklgpnssekqtakaekel 106
                  C++ lq+a+++v   l ++ e++ +++ ++ d+  ++++ +++  + +++++ l
  KOO24635.1  57 ACKQALQNASRLVADALRELRESVDEALAEAADEEGNAFEDEATVLTDSAVTTPL 111
                 6**********************************99996655555555555544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (216 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       758  (0.0422779); expected 358.6 (0.02)
Passed bias filter:                      484  (0.0269954); expected 358.6 (0.02)
Passed Vit filter:                        50  (0.00278878); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.43u 0.23s 00:00:00.66 Elapsed: 00:00:00.38
# Mc/sec: 1707.99
//
Query:       KOO24636.1  [L=709]
Description: trans-2-enoyl- mitochondrial [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.6e-15   56.9   0.1    3.8e-15   55.8   0.1    1.7  1  DnaJ        DnaJ domain
    1.7e-12   47.4   0.0    4.1e-12   46.2   0.0    1.6  1  ADH_zinc_N  Zinc-binding dehydrogenase
    2.3e-05   24.8   0.1    0.00022   21.6   0.1    2.6  1  SAM_1       SAM domain (Sterile alpha motif)
      0.003   17.6   0.2      0.029   14.5   0.2    2.7  1  SAM_2       SAM domain (Sterile alpha motif)


Domain annotation for each model (and alignments):
>> DnaJ  DnaJ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.8   0.1   8.4e-19   3.8e-15       1      63 []       3      61 ..       3      61 .. 0.97

  Alignments for each domain:
  == domain 1  score: 55.8 bits;  conditional E-value: 8.4e-19
                HHHHHHTSSTTG-HHHHHHHHHHHHHHHSTTTSCCHHHHHHHHHHHHHHHHHHTSHHHHHHHH CS
        DnaJ  1 dyYeiLgvskdasedeIkkaYrklalkyHPDknpkdpeaeekFkeineAyevLsdpekRkqYD 63
                d+Y++Lgv+k+a++d+I+ aY+++a+k HPD+        e  + i++A++ Lsd ++R+ YD
  KOO24636.1  3 DHYAVLGVKKTATTDDIRTAYKEKAMKNHPDRG----GDVEVWQAIQKAFDALSDLQRRALYD 61
                89*******************************....67799********************9 PP

>> ADH_zinc_N  Zinc-binding dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.2   0.0   9.2e-16   4.1e-12       1     117 [.     386     504 ..     386     522 .. 0.85

  Alignments for each domain:
  == domain 1  score: 46.2 bits;  conditional E-value: 9.2e-16
                 HHHHHHHHHHHHTT-EEEEEESSHHHH....HHHHHTTESEEEETTTCHHHHHHHHHTTTSSEEEEEESSCSHHHHHHHHHCEEEEEEEEECSCTSSEE CS
  ADH_zinc_N   1 gvGlaavqlAkalGaeviavdsseekl....elakklGadevinykeadlverikeltggegvdvvfecvGsgatleaalkllkpgGrlvvvGggkgee 95 
                 + G+a +ql+++l++++i  + +++ +    el+++lGa++v+  ++ +++e + +l     + ++++++G g++ ++   +l+pgG+lv+  + +g+ 
  KOO24636.1 386 PTGQAIIQLCNMLKIRTINLVTDDDGFehskELLMQLGATHVLRDNS-KISEFLDALG-AAMPRLALDALG-GEAGKRLAIALRPGGTLVIHQIQTGQV 481
                 579************9999888877553444888889********66.8999998888.88**********.**********************66666 PP

                 E.EEHHHHHHTT-EEEEE-SSCH CS
  ADH_zinc_N  96 e.fdlrnlllkeksilGsllgsl 117
                 + ++++ l+++++si G++l+++
  KOO24636.1 482 PqISPSLLMYQQISIFGFNLAQW 504
                 66*****************9993 PP

>> SAM_1  SAM domain (Sterile alpha motif)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.6   0.1   4.9e-08   0.00022      10      60 ..     645     705 ..     640     708 .. 0.84

  Alignments for each domain:
  == domain 1  score: 21.6 bits;  conditional E-value: 4.9e-08
                 HHHHHTTSGGGHHHH.HTTTSSHHHHTTSCHHH.........HHHCTTTSHHHHHHHHHHH CS
       SAM_1  10 eWLesiglgqYadlF.rageidgdaLllltedd.........LeklgvtllGHrkkIlyaI 60 
                   L +++l+ Y+ +F ++++++   L ++             L+++g++++GHr++I+ a+
  KOO24636.1 645 ALLTELKLEAYIPQFvEEEMTSISLLEEIVGRAegerelmeaLKEMGIKKMGHRQSIVGAV 705
                 56999************************85444455566669**************9887 PP

>> SAM_2  SAM domain (Sterile alpha motif)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.5   0.2   6.4e-06     0.029      12      59 ..     646     702 ..     641     706 .. 0.82

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 6.4e-06
                 HHHHTTTGGGHHHHHHTTCSHHHHH.........TTSCHHHHHHTTHHHHHHHHHHH CS
       SAM_2  12 WLrsiglkqytdnFrdagitgaell.........lrlteedLkrlGitsvghrkkil 59 
                  L +++l+ y + F + ++t+++ll         +r  +e Lk++Gi ++ghr+ i 
  KOO24636.1 646 LLTELKLEAYIPQFVEEEMTSISLLeeivgraegERELMEALKEMGIKKMGHRQSIV 702
                 58899999*************9999999888555555566679***********885 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (709 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       426  (0.0237604); expected 358.6 (0.02)
Passed bias filter:                      368  (0.0205254); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.60u 0.25s 00:00:00.85 Elapsed: 00:00:00.42
# Mc/sec: 5088.17
//
Query:       KOO24637.1  [L=204]
Description: 60s ribosomal protein l15 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.2e-83  279.6   9.9    1.4e-83  279.4   9.9    1.0  1  Ribosomal_L15e  Ribosomal L15


Domain annotation for each model (and alignments):
>> Ribosomal_L15e  Ribosomal L15
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  279.4   9.9   7.5e-88   1.4e-83       1     190 [.       2     190 ..       2     191 .. 0.98

  Alignments for each domain:
  == domain 1  score: 279.4 bits;  conditional E-value: 7.5e-88
                     -SHHHHHHHTTSTTSHHHHHHHHHHHHHHTTS-SEEEESS-SSHHHHHHHT--SSTTEEEEEEEEE-SS---..---SS---GGGG-SSS---SS CS
  Ribosomal_L15e   1 gaykylrelwkkkqsdvlrellrerlweyrqepavvrverptrldrArrLGYkakqGivvvrvrvrrGgrkkkvskgktgrkpkrqgvnklkpak 95 
                     ga++yl+elwkkkqsd++ +llr+r+weyr++p+++r+ rptr+d+Ar+LGYkakqG++++rvrv+rG+rk   skg +++kp++ g++k k ++
      KOO24637.1   2 GAFRYLNELWKKKQSDTICFLLRVRCWEYRNLPVIHRAARPTRPDKARNLGYKAKQGFCIYRVRVKRGSRKMVKSKGHNNGKPRNCGIRKHKWRR 96 
                     6899******************************************************************************************* PP

                     -HHHHHHHHHHHHSTTSEEEEEEEEEEESSEEEEEEEEE-TTSHHHHT-TTTGGGGSGGGTTGGGGT-SHHHHHHTT-S-SS.TT-TTTSS-TGG CS
  Ribosomal_L15e  96 slqaiaeervgrklpnlrvLnSYwvgeDgtykyyEvilvDpshkairndkkinwickkvhkhRelrGltsagkksRGlrkkglkgaekirgsrra 190
                     ++++ aeervgr + +lrvLnSYwv++D +ykyyEvi+vD++hka+r+d+++nw+c++vhkhRelrGltsag+++RGlr +  +ga+kir+s+ra
      KOO24637.1  97 NHRSKAEERVGRACAGLRVLNSYWVAQDTMYKYYEVIMVDTHHKAVRTDPRVNWLCNHVHKHRELRGLTSAGRQGRGLRVRN-HGASKIRPSKRA 190
                     ******************************************************************************8888.999999****98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (204 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       548  (0.030565); expected 358.6 (0.02)
Passed bias filter:                      323  (0.0180155); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.24s 00:00:00.67 Elapsed: 00:00:00.43
# Mc/sec: 1441.21
//
Query:       KOO24638.1  [L=272]
Description: tropomodulin isoform cra_a [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.5e-08   32.0   0.9    1.7e-05   24.5   0.2    3.1  2  LRR_6     Leucine Rich repeat


Domain annotation for each model (and alignments):
>> LRR_6  Leucine Rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.0   0.0    0.0017        30       2      18 ..      54      70 ..      53      76 .. 0.78
   2 !   24.5   0.2   9.3e-10   1.7e-05       1      24 []      81     104 ..      81     104 .. 0.96

  Alignments for each domain:
  == domain 1  score: 5.0 bits;  conditional E-value: 0.0017
       LRR_6  2 nthLteLdLsgNdIgDe 18
                nth  eL + +++IgD+
  KOO24638.1 54 NTHCLELIMEDCNIGDK 70
                67777899********8 PP

  == domain 2  score: 24.5 bits;  conditional E-value: 9.3e-10
       LRR_6   1 snthLteLdLsgNdIgDeGaeaLa 24 
                 +n++L +Ld++ N I DeG++aLa
  KOO24638.1  81 TNNTLVHLDVQNNRIKDEGGTALA 104
                 59*********************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (272 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       435  (0.0242624); expected 358.6 (0.02)
Passed bias filter:                      307  (0.0171231); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.24s 00:00:00.67 Elapsed: 00:00:00.41
# Mc/sec: 2010.56
//
Query:       KOO24639.1  [L=688]
Description: hypothetical protein Ctob_007499 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (688 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       267  (0.0148921); expected 358.6 (0.02)
Passed bias filter:                      208  (0.0116013); expected 358.6 (0.02)
Passed Vit filter:                        12  (0.000669307); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.54u 0.25s 00:00:00.79 Elapsed: 00:00:00.42
# Mc/sec: 4906.37
//
Query:       KOO24640.1  [L=270]
Description: metallophosphoesterase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.2e-06   29.2   0.0    2.7e-06   28.0   0.0    1.5  1  Metallophos    Calcineurin-like phosphoesterase
      3e-05   24.3   0.0    5.8e-05   23.3   0.0    1.5  1  Metallophos_2  Calcineurin-like phosphoesterase superfamily d


Domain annotation for each model (and alignments):
>> Metallophos  Calcineurin-like phosphoesterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.0   0.0     3e-10   2.7e-06       4     204 .]      64     228 ..      61     228 .. 0.57

  Alignments for each domain:
  == domain 1  score: 28.0 bits;  conditional E-value: 3e-10
                  EEEESBTBTTCCTHHHHHHHHHHHHHHHTTESEEEEEST..SSSSS...HHHHHHHHHHHHHHHHTSEEEEEC-TTSCHHHHHHHHHHHHHHHHHHHE CS
  Metallophos   4 lvigDlHlalgggqlddllkllddllreekpdlvllaGD..lvdrg...dlekellellaalvkypipvylllGNHegfeeellnkygylgifsepwr 96 
                  ++i+D+H     ++l+ l+            d+++++GD  +   g    le  ++e +a+l +  +++++++GNH+    + l + g+ +  ++   
   KOO24640.1  64 VFISDTH-----AHLEGLQLP--------MGDVLVHTGDitFCAQGglaALEG-FNEAMAKLPH--THKVVIAGNHD----KRLLQLGKVE--ARKVL 139
                  6777777.....666666664........57********88666666999999.9999999999..899********....3333333222..22222 PP

                  HHHCEEETSEEEEEETTE..EEEEEEESECEEETHHHHHHHHHHHSCHHHHCCHHHHHHHHHHTTCSEEEEEESSESSCSSSCSCCHHHHHHHHHHTT CS
  Metallophos  97 sdaevfnnlplaslgsgs..lkvlllhGgspellvsldklgslnleleapepgdewlkdlekrekadwvivlgHsplyrgsgylfgdealedllkkyg 192
                  s + +++n  +   g  +    +   h           + ++   + e+ +    +++     +++d++++l+H           +++ l+    + +
   KOO24640.1 140 SACHYLENSGVKLCGLHFwgSPFSARHKK--------RSSNTAFQYSEELQ--RTIWRY----TPNDVDVLLTHGASA-------PSPLLRAAIARIQ 216
                  22222222111111111122223333333........22222222222222..677777....888888888888888.......6666665555666 PP

                  ESEEEEESSSSE CS
  Metallophos 193 vdlvisGHtHvy 204
                  + l  +GH+H+y
   KOO24640.1 217 PYLHAHGHEHEY 228
                  666678888876 PP

>> Metallophos_2  Calcineurin-like phosphoesterase superfamily domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.3   0.0   6.5e-09   5.8e-05       3     130 ..      63     228 ..      61     234 .. 0.69

  Alignments for each domain:
  == domain 1  score: 23.3 bits;  conditional E-value: 6.5e-09
  Metallophos_2   3 laiiSDlHsnldaleavlealkevgvdaiihaGDl...eeeepevleellela......pvlaVrGNnD........................... 62 
                     ++iSD+H++l+ l       +    d ++h+GD+    ++ + +le + e          +++ GN+D                           
     KOO24640.1  63 CVFISDTHAHLEGL-------QLPMGDVLVHTGDItfcAQGGLAALEGFNEAMaklphtHKVVIAGNHDkrllqlgkvearkvlsachylensgvk 151
                    57899999444444.......433346788888866554445555666655555567778899***************************999999 PP

  Metallophos_2  63 ...........eevveedvlreaaelgtdlpeeaelel.....agekvlliHgdplgvkdalaellkeaeegsdvvvcGHtHvp 130
                               +  ++++ ++ a +++++l+     ++     ++++vll+Hg  ++ +  l++++ +   + ++ ++GH H+ 
     KOO24640.1 152 lcglhfwgspfSARHKKRSSNTAFQYSEELQ----RTIwrytpNDVDVLLTHGA-SAPSPLLRAAIAR--IQPYLHAHGHEHEY 228
                    9999988644333345555555555555553....333344568888******9.3555555555555..5566********86 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (270 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       244  (0.0136092); expected 358.6 (0.02)
Passed bias filter:                      232  (0.0129399); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.42u 0.25s 00:00:00.67 Elapsed: 00:00:00.40
# Mc/sec: 2049.87
//
Query:       KOO24641.1  [L=281]
Description: hypothetical protein Ctob_003740, partial [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (281 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1070  (0.0596798); expected 358.6 (0.02)
Passed bias filter:                      333  (0.0185733); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.41u 0.24s 00:00:00.64 Elapsed: 00:00:00.38
# Mc/sec: 2227.01
//
Query:       KOO24642.1  [L=268]
Description: hypothetical protein Ctob_003741 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.4e-34  118.5   0.1    1.1e-30  107.0   0.0    2.0  2  PAE       Pectinacetylesterase


Domain annotation for each model (and alignments):
>> PAE  Pectinacetylesterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  107.0   0.0   6.1e-35   1.1e-30      19     153 ..      20     159 ..      16     169 .. 0.90
   2 !    9.8   0.1   2.2e-05       0.4     305     350 ..     169     211 ..     160     215 .. 0.87

  Alignments for each domain:
  == domain 1  score: 107.0 bits;  conditional E-value: 6.1e-35
         PAE  19 akgAvClDGsppgYylkrgf.gsgaknwlihleGGgwcnnvesclsrkktrlgSskkmekql.kfsgilsnkqeenpdfynwNrvkvrYCdgasfsGdv 115
                 a gA ClDG+ pg++++ +  ++ a++wli+l+GG+wc + +sc+sr++   gS++  +k+   + g + ++++ np f +  r++++YCdgasf+Gd+
  KOO24642.1  20 ALGAYCLDGTVPGFWYQAANsAATARSWLIFLDGGAWCYDQHSCESRARGFKGSTSSAPKSFwPYAGPMDENDAVNPGFASFHRLHLHYCDGASFAGDR 118
                 679***********99986537889*****************************999988752799********************************9 PP

         PAE 116 e.ev..dkstklyFrGqrilqaviedLlekglkkakkvlLs 153
                 + ++   +++ ly rG+r++ a i   le gl++a++vl +
  KOO24642.1 119 AtPItmADGKLLYLRGRRVFAAQIAAALELGLRDADEVLFT 159
                 96443367778999************************987 PP

  == domain 2  score: 9.8 bits;  conditional E-value: 2.2e-05
         PAE 305 kskkkgvFinscfaHcqsesqstwlaeespriknktiakavgdWyf 350
                 +++  g+Fi+sc +H+   s++ +      ri ++t+++a+  W  
  KOO24642.1 169 ERRGCGAFITSCNEHVAGLSTKAFI---GYRIGGTTMQQALWAWWT 211
                 566789*********9999999999...99************9965 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (268 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       398  (0.0221987); expected 358.6 (0.02)
Passed bias filter:                      287  (0.0160076); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.27s 00:00:00.69 Elapsed: 00:00:00.42
# Mc/sec: 1918.08
//
Query:       KOO24643.1  [L=453]
Description: aldo keto reductase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    3.1e-52  177.6   0.0    4.1e-52  177.2   0.0    1.1  1  Aldo_ket_red  Aldo/keto reductase family


Domain annotation for each model (and alignments):
>> Aldo_ket_red  Aldo/keto reductase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  177.2   0.0   2.3e-56   4.1e-52       3     291 ..      25     385 ..      23     388 .. 0.93

  Alignments for each domain:
  == domain 1  score: 177.2 bits;  conditional E-value: 2.3e-56
                   EEE-SSS-ST.TS-HHHHHHHHHHHHHTT--EEE--TT-.....TTTHHHHHHHHHHHH....-TTTGGG-EEEEEE..................-- CS
  Aldo_ket_red   3 glGtwqlgskeeiskeealellrraleaGinffDtAevY.....gkgqseellGealkk....srkkreeviiatKv..................dl 72 
                   ++Gt+++gs  + ++eea++ l++a+e G nffDtAe+Y        + e ++G++l +     + kr+++ iatK+                  ++
    KOO24643.1  25 CIGTMTWGSF-NGKEEEAFAQLDKAVEMGANFFDTAELYpvafnYGKTTEAWMGKWLTArtreGKIKRQDLYIATKCnpsriggpdwiegvdgpgKN 120
                   99******96.77889999*******************99998544566778********999999***************************9999 PP

                   SSSTTSSSS-HHHHHHHHHHHHHHHT-S-EEEEEE-S--TTS-...............................HHHHHHHHHHHHHTTSEEEEEEE CS
  Aldo_ket_red  73 rdaeiksglskeniresleeslkrLgtdyvDllllHrpdpslp..............................sieevldaleelvkeGkiraiGvS 139
                   ++a ++ +++++ +++s+++s +rL   y+Dl++lH+p++++p                                e +l a++ l ++G+i+++G+S
    KOO24643.1 121 MPAGYCHSYEADILEKSCRASIERLCCGYIDLYQLHWPTRDCPifgcfsfspagvnrpmphantlapgepgyaVFERQLLAIKRLLDAGLIKNWGLS 217
                   999999999999************************************************************999********************** PP

                   S--.HHHHHHH...HHTTT--EEEEE-B-BTT-HHHHTTHHHHHHHTT-EEEEBSTTGGGTTGTTTSS---SSSCCC-------............. CS
  Aldo_ket_red 140 nfs.veqleka...kkkkkvkivavqveynllreleeegllelckkkgvpliaysplggGlltgkyqseedkedkeprkdlkrd............. 219
                   n++  ++   +    k +  ++v+ q+ ++ll++  e+ + e+++  gv   +y++l+gG ltgky + ++  +  ++++   d             
    KOO24643.1 218 NENaFGITMFCtlaDKLGMARPVSCQNDFSLLNRTYESDTWEAAYRFGVVGLPYGCLAGGVLTGKYFDGTKWSQAAAADRPL-Dlcrmrkekdfqpr 313
                   **9777777778888888889*********************************************9988877555554433.25899999999999 PP

                   TS-HHHHHHHHHHHHHHHHTT--HHHHHHHHHTTSTT-SEEEE--SSHHHHHHHHGGGG----HHHHHHHHH CS
  Aldo_ket_red 220 ertsknldaaeelselakehgvslaqlalryalsqpavgivipgasnieqlednldalelklseeevaelde 291
                     ++ +++aa e+ +la+++g+++++lal++a +++ ++++i g++++ q+e+ ++a++++l+ee ++++d 
    KOO24643.1 314 YGMPMAMLAAAEYIKLAEQYGITPTELALSWARQRQCNTSIITGTTTVLQMEECINAFKIELPEELMKAVDV 385
                   ********************************************************************9985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (453 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       463  (0.0258241); expected 358.6 (0.02)
Passed bias filter:                      378  (0.0210832); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.25s 00:00:00.74 Elapsed: 00:00:00.39
# Mc/sec: 3451.71
//
Query:       KOO24644.1  [L=580]
Description: hypothetical protein Ctob_003743 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (580 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       303  (0.0169); expected 358.6 (0.02)
Passed bias filter:                      223  (0.0124379); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.49u 0.22s 00:00:00.71 Elapsed: 00:00:00.38
# Mc/sec: 4597.36
//
Query:       KOO24645.1  [L=946]
Description: coatomer subunit beta-1-like protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.4e-95  319.6   8.7    4.8e-95  319.1   8.7    1.1  1  Adaptin_N        Adaptin N terminal region
    1.4e-55  186.8   0.0      3e-55  185.6   0.0    1.6  1  Coatomer_b_Cpla  Coatomer beta subunit appendage platform
    2.6e-49  166.7   0.1    5.6e-49  165.7   0.1    1.6  1  Coatamer_beta_C  Coatomer beta C-terminal region
      7e-08   32.7   5.9    8.4e-07   29.2   0.7    2.5  2  Cnd1             non-SMC mitotic condensation complex subunit
  ------ inclusion threshold ------
      0.055   13.7   0.3         20    5.4   0.4    2.9  2  DUF5071          Domain of unknown function (DUF5071)
      0.095   13.0   2.9        3.1    8.3   0.0    3.9  4  HEAT             HEAT repeat
       0.67    9.3   5.8        1.2    8.5   3.0    2.5  3  DUF5578          Family of unknown function (DUF5578)
       0.91    9.6   5.4        8.7    6.4   0.7    3.6  4  ParcG            Parkin co-regulated protein


Domain annotation for each model (and alignments):
>> Adaptin_N  Adaptin N terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  319.1   8.7   2.1e-98   4.8e-95       6     453 ..      23     470 ..      20     490 .. 0.96

  Alignments for each domain:
  == domain 1  score: 319.1 bits;  conditional E-value: 2.1e-98
                 CHHHHHHCCSSS-SCHHHHHHHHHHHHHHHCT---GHHHHHHHCCCC.SS-CHHHHHHHHHHHHHCTTSCC.....HHCCCCHHHHHHCCSSSHHHHHH CS
   Adaptin_N   6 qqelaeilnsnkdddekkkeavkkliylialGedvsflffevvklva.skdfelKrlvYlylellaeesed.....lalLvtnslqkDlkdpnqlirgl 98 
                 ++el+e l+s+  d ekk   +kkli l+++Ge+++ +++ v+++   ++d+++K+l+ +y+e++ +  +d     +++Lvtn++++Dl +p++ +rg 
  KOO24645.1  23 EEELREELESK--DIEKKVVGLKKLISLLLNGESMPKMLMVVIRFCVtCDDHKIKKLLLIYWEVCEKHGPDgkllpEMILVTNAIRNDLVHPSEWVRGC 119
                 67899999999..*******************************9877*************************************************** PP

                 HHHHHCCC--CCCHHHHHHHHHHHHT-SSHHHHHHHHHHHHHCCCCCHHCCCCCHHHHHHHCT..T-SSHHHHHHHHHHHHHHHCCCCCCCHHHHHHHC CS
   Adaptin_N  99 ALrvLssirvpelaedlapaikkllkdrspyvrkkAalailklykkdpdllrkqlveeikell..sdkdpgvvlaAvalleeikkndrlllkllpklvr 195
                 +Lr++++++++e++e l p +k+ l++r++yvr++A+la++ ++k+ ++ +++   +e++e++  ++ dp+++++A+ +l ++   d++  ++++ l++
  KOO24645.1 120 TLRFMCKLKEAEILEPLIPVVKNNLEHRHAYVRRNAVLAVFLIFKNFEHMIPD--GPELVEKVlqAEADPSCKRNAFLMLFSC---DQE--RAVHFLSN 211
                 ***************************************************99..58888888799999**************...999..******** PP

                 CHHHHHHCS-HHHHHHHHHHHCC---SSHHHH..HHHHHHHCGGCGCSSCHHHHHHHHHCCHCCCCSTHHHCCHHCHHHHHH.SSCCTCHHHHHCHHHH CS
   Adaptin_N 196 rLcnllteldpwlqvkiiklltrlarqepeerskkellesllnllqssnnaVlletvnlivelapknelivlavnaLvrlls.skdenlryvaLrtllk 293
                 +L+++  + ++ lq+++++l++++++++p ++  +++++++l+l++ss+ aV++e++ +++ l++++++i++a++ + +ll  ++d+n+++++L++l+ 
  KOO24645.1 212 NLDQV-ANYSDTLQLVVLELIRKVVKSNPLDK--SKYVRCILTLFNSSSSAVVYECASTMIALSSSATAIKAAASSYTQLLAtQSDNNIKLIVLERLQD 307
                 ***98.999999********************..66*********************************************999*************** PP

                 HHHHXXTTTTTTTCCCCSXXTTSXHHHHHHHHHHHCCCXXTTTHHHHHHHHHHHTTSSXXHH......HHHHHHHHHHHHHHHSCCHHHHHHHHHHHHH CS
   Adaptin_N 294 ivkkepkavqhldlkifllktdddvsirlkaldlllklvdesNvkeivkeLkkyvkevaded......fksklvkaIgrlaekfatdaewvldvllell 386
                 + k++pk +++l ++i +  ++ + +ir+k+ld+ l+lv+   + e+++ Lkk+v+++a ed      +++ l+++I++ ++kf++ +++v+++l+++l
  KOO24645.1 308 LKKQHPKVLSELIMDILRALASANLDIRKKTLDIILDLVTPATIPEVMQVLKKEVAKTAGEDgdksaeYRAILISSIHKSTTKFPEAVSTVVPILMDFL 406
                 *****99999*********************************************77777778899********************************* PP

                 TTXXHHHHHHHHHHHHHHHHHSTTTSTTCHHHHCCTCCGXXSHHHHHHHHHHHHHTTTTXTT...HH CS
   Adaptin_N 387 slsgesvkdeivevirdliqkvpelheeiiekLaellekieseearaaaiWllGeygelvsntesas 453
                  +s++  + +++  +r++++++p l+e + +kL++ + +i s  + ++a+Wl+Gey++++++   ++
  KOO24645.1 407 GDSNQASAVDVILYVREIVETYPHLREATMRKLLQSFPTIHSSRVARVALWLVGEYCTEAQD---VA 470
                 **********************************************************9998...43 PP

>> Coatomer_b_Cpla  Coatomer beta subunit appendage platform
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  185.6   0.0   1.3e-58     3e-55       1     128 []     806     933 ..     806     933 .. 0.99

  Alignments for each domain:
  == domain 1  score: 185.6 bits;  conditional E-value: 1.3e-58
  Coatomer_b_Cpla   1 drnvvilndikidimdyikpakiseeeFremWaefeWEnkiavktkltdlkeyleelvkktnmklltpeeeleeeaeflsanlyaksvfgedal 94 
                      drn+v+lndi+idimdyi+ a++++  Fr mWaefeWEnk+a++t++td++ +l +lv++t+mk+ltp+++le+e++fl+anlyaks+fgedal
       KOO24645.1 806 DRNCVVLNDIHIDIMDYINAASCTDLAFRAMWAEFEWENKVAIDTDITDVHVFLAHLVTSTKMKCLTPASALEGESRFLAANLYAKSTFGEDAL 899
                      79******************************************************************************************** PP

  Coatomer_b_Cpla  95 anvsiekeeegkisgvvRiRsktqgialslgdki 128
                      +nvs+ek++ g++ g++RiRsktqgialslgdk+
       KOO24645.1 900 VNVSLEKRSAGSLCGYIRIRSKTQGIALSLGDKL 933
                      ********************************96 PP

>> Coatamer_beta_C  Coatomer beta C-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  165.7   0.1   2.5e-52   5.6e-49       2     139 ..     660     797 ..     659     798 .. 0.91

  Alignments for each domain:
  == domain 1  score: 165.7 bits;  conditional E-value: 2.5e-52
  Coatamer_beta_C   2 ddlisfrqlkekkelseeeee.dlveedlsqatgakkkeeefasklkkvvqLtGfsDpvYaEayvkvnqfDivLdvlivNqtketLqnltvela 94 
                      ddlis+rql+ + ++ +  +  d  ++  s+atg+ + +e+fa++lk+v+qLtG+sD vYaEayv+v+++Di+Ld+l++Nq+ket+ n+++ela
       KOO24645.1 660 DDLISVRQLRGRAQDPTFMDLdDDDDAAFSKATGGGA-KEDFAERLKRVTQLTGLSDTVYAEAYVTVHSYDIMLDLLLINQSKETMYNMCLELA 752
                      9*********998777665541446666777776666.899***************************************************** PP

  Coatamer_beta_C  95 tlgdlklvekpqsvtlaphdfakikatvkvsstetGvifGnivYd 139
                      t+gdlkl+++pqs+tl++ ++++ik+++kvsstetG++fG+ivYd
       KOO24645.1 753 TVGDLKLCDRPQSYTLKAGESKHIKTNIKVSSTETGIVFGTIVYD 797
                      ********************************************9 PP

>> Cnd1  non-SMC mitotic condensation complex subunit 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.2   0.7   3.8e-10   8.4e-07       2     159 ..     116     267 ..     115     270 .. 0.84
   2 !    5.7   0.5    0.0062        14      15     154 ..     312     452 ..     280     457 .. 0.66

  Alignments for each domain:
  == domain 1  score: 29.2 bits;  conditional E-value: 3.8e-10
        Cnd1   2 iRalairtlgcirvpnlveylvepLrkrLkDedpyVRktaaivvakLiln.dmvkekgflselakll.eDenprVvanalaalteiseksenaiynllp 98 
                 +R+  +r ++ ++  +++e+l++ +++ L+ +++yVR++a+++v  +++n + ++  g  + ++k l  + +p+   na ++l  + ++    +++++ 
  KOO24645.1 116 VRGCTLRFMCKLKEAEILEPLIPVVKNNLEHRHAYVRRNAVLAVFLIFKNfEHMIPDG-PELVEKVLqAEADPSCKRNAFLMLFSCDQERAVHFLSNNL 213
                 89******************************************99966624444444.566777776789999************9998666666666 PP

        Cnd1  99 diisklsdalnecsewgqitilefLlsyipkdkqeaeslveklcprlqhansavvlaaikv 159
                 d + ++s          q ++le++ + ++++  +  + v  +   ++ + savv ++ + 
  KOO24645.1 214 DQVANYS-------DTLQLVVLELIRKVVKSNPLDKSKYVRCILTLFNSSSSAVVYECAST 267
                 6666666.......568999***********999999999999999999999999988765 PP

  == domain 2  score: 5.7 bits;  conditional E-value: 0.0062
        Cnd1  15 vpnlveylvepLrkrLkDedpyVRktaaivvakLilndmvk.ekg.flselakll.eDenprVvanalaalteiseksenaiynllpdiisklsdalne 110
                  p+++ +l+ ++ ++L   +  +Rk ++ +++ L+++ ++  + + + +e+ak   eD ++  +a  +a+l    +ks++++ + +++++  l d l +
  KOO24645.1 312 HPKVLSELIMDILRALASANLDIRKKTLDIILDLVTPATIPeVMQvLKKEVAKTAgEDGDK--SAEYRAILISSIHKSTTKFPEAVSTVVPILMDFLGD 408
                 5788888888888899999999999999999999777655414444556666666433333..233333333333333345555555555555555556 PP

        Cnd1 111 csewgqitilefLlsyipkdkqeaeslveklcprlqhansavvl 154
                  ++++ + ++ ++ + ++   +  e  + kl + + +  s++v 
  KOO24645.1 409 SNQASAVDVILYVREIVETYPHLREATMRKLLQSFPTIHSSRVA 452
                 67777777777777777777777778888888888877777775 PP

>> DUF5071  Domain of unknown function (DUF5071)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.4   0.4    0.0091        20      12      67 ..     305     361 ..     301     369 .. 0.86
   2 ?    4.6   0.0     0.016        37      19      55 ..     391     427 ..     381     442 .. 0.84

  Alignments for each domain:
  == domain 1  score: 5.4 bits;  conditional E-value: 0.0091
                 HHHHTT--HHHHGGGHHHHHGGGS-TTSTTHHHHHHHHHHT.GGGTHHHHHHHHHSS CS
     DUF5071  12 vrkLkelvaeelkplvpeLLeWlqDlNwPiaspiaelLarf.peelvkeiaeiLekn 67 
                 +++Lk++  + l++l+ ++L  l+ +N  i ++ ++++ +    ++++e++++L+k+
  KOO24645.1 305 LQDLKKQHPKVLSELIMDILRALASANLDIRKKTLDIILDLvTPATIPEVMQVLKKE 361
                 6889999999999*****************999999877763778899999999874 PP

  == domain 2  score: 4.6 bits;  conditional E-value: 0.016
                 -HHHHGGGHHHHHGGGS-TTSTTHHHHHHHHHHTGGG CS
     DUF5071  19 vaeelkplvpeLLeWlqDlNwPiaspiaelLarfpee 55 
                   e ++ +vp L+++l D N   a +++ ++++++e+
  KOO24645.1 391 FPEAVSTVVPILMDFLGDSNQASAVDVILYVREIVET 427
                 4789999********************9999998876 PP

>> HEAT  HEAT repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.3   0.0    0.0014       3.1       1      24 [.     136     159 ..     136     166 .. 0.91
   2 ?    2.6   0.1     0.091     2e+02       3      29 ..     247     273 ..     246     275 .. 0.90
   3 ?   -3.2   0.1       7.1   1.6e+04       5      24 ..     323     342 ..     321     346 .. 0.75
   4 ?   -3.3   0.0       7.6   1.7e+04      13      28 ..     448     463 ..     438     464 .. 0.79

  Alignments for each domain:
  == domain 1  score: 8.3 bits;  conditional E-value: 0.0014
                 HHHHHHHHHT-SSHHHHHHHHHHH CS
        HEAT   1 llPlllkllsDpspeVReaAakaL 24 
                 l+P++ ++l++ ++ VR++A++a+
  KOO24645.1 136 LIPVVKNNLEHRHAYVRRNAVLAV 159
                 79*******************996 PP

  == domain 2  score: 2.6 bits;  conditional E-value: 0.091
                 HHHHHHHT-SSHHHHHHHHHHHHHHHH CS
        HEAT   3 PlllkllsDpspeVReaAakaLgalae 29 
                  ++l+l +++s+ V + +a ++ al++
  KOO24645.1 247 RCILTLFNSSSSAVVYECASTMIALSS 273
                 5899*9***************999986 PP

  == domain 3  score: -3.2 bits;  conditional E-value: 7.1
                 HHHHHT-SSHHHHHHHHHHH CS
        HEAT   5 llkllsDpspeVReaAakaL 24 
                 +l++l + + ++R+ ++  +
  KOO24645.1 323 ILRALASANLDIRKKTLDII 342
                 57778899999999887665 PP

  == domain 4  score: -3.3 bits;  conditional E-value: 7.6
                 SHHHHHHHHHHHHHHH CS
        HEAT  13 speVReaAakaLgala 28 
                 s++V + A++ +g+ +
  KOO24645.1 448 SSRVARVALWLVGEYC 463
                 6788899999999876 PP

>> DUF5578  Family of unknown function (DUF5578)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.7   0.3     0.065   1.5e+02     200     252 ..     222     274 ..     209     291 .. 0.66
   2 ?    8.5   3.0   0.00055       1.2     157     254 ..     254     350 ..     243     364 .. 0.68
   3 ?   -2.0   0.0      0.83   1.9e+03     204     262 ..     379     439 ..     369     460 .. 0.68

  Alignments for each domain:
  == domain 1  score: 1.7 bits;  conditional E-value: 0.065
     DUF5578 200 kaqqlalqtlrvvqeivkeakpsivepllelLkslhlevqyeaielikelmst 252
                 + q ++l+ +r v ++ +  k++ v ++l+l +s  + v ye  + + +l s+
  KOO24645.1 222 TLQLVVLELIRKVVKSNPLDKSKYVRCILTLFNSSSSAVVYECASTMIALSSS 274
                 44445556667777777777778888888888888888888877766666644 PP

  == domain 2  score: 8.5 bits;  conditional E-value: 0.00055
     DUF5578 157 akskseetqeeaqkllesla.egnPkyqkqvykgliallacsspkaqq.lalqtlrvvqeivkeakpsivepllelLkslhlevqyeaielikelmste 253
                  +s+s+ + e a++++   +     k     y +l+a    +s +  + ++l+ l+ ++++ +++ + ++  +l +L+s++l+++++++++i +l++  
  KOO24645.1 254 NSSSSAVVYECASTMIALSSsATAIKAAASSYTQLLAT---QSDNNIKlIVLERLQDLKKQHPKVLSELIMDILRALASANLDIRKKTLDIILDLVTPA 349
                 55555555555555554332023345555566666654...5555555056699*****************************************8754 PP

     DUF5578 254 v 254
                  
  KOO24645.1 350 T 350
                 3 PP

  == domain 3  score: -2.0 bits;  conditional E-value: 0.83
     DUF5578 204 lalqtlrvvqeivkeakpsivepllelLkslhlevqyeaielikelmst..evraallkgl 262
                 + +++++   ++ +ea +++v  l++ L   ++    ++i +++e+++t  ++r+a +++l
  KOO24645.1 379 ILISSIHKSTTKFPEAVSTVVPILMDFLGDSNQASAVDVILYVREIVETypHLREATMRKL 439
                 4556666777777777777777777777777777777777777776644334555544444 PP

>> ParcG  Parkin co-regulated protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.1       0.9     2e+03      85     118 ..      26      59 ..      25      66 .. 0.84
   2 ?    2.4   0.0     0.064   1.4e+02      82     138 ..     102     156 ..      83     185 .. 0.76
   3 ?   -2.0   0.0       1.5   3.3e+03      81     129 ..     245     292 ..     230     300 .. 0.74
   4 ?    6.4   0.7    0.0039       8.7      72     109 ..     310     347 ..     297     363 .. 0.84

  Alignments for each domain:
  == domain 1  score: -1.3 bits;  conditional E-value: 0.9
       ParcG  85 lkeaLntrdeeviesaLkvlqklvkaseligeaL 118
                 l+e L+++d e   + Lk l  l+  +e++ + L
  KOO24645.1  26 LREELESKDIEKKVVGLKKLISLLLNGESMPKML 59 
                 899***************9999988777766665 PP

  == domain 2  score: 2.4 bits;  conditional E-value: 0.064
       ParcG  82 ilplkeaLntrdeeviesaLkvlqklvkaseligeaLvpyyrqlLpvlnlfknkrvn 138
                   +++++L + +e v   +L+ + kl   +  i e L+p  ++ L +  ++ +++  
  KOO24645.1 102 TNAIRNDLVHPSEWVRGCTLRFMCKL--KEAEILEPLIPVVKNNLEHRHAYVRRNAV 156
                 34689999999999999999999999..77789999999999999998888887754 PP

  == domain 3  score: -2.0 bits;  conditional E-value: 1.5
       ParcG  81 lilplkeaLntrdeeviesaLkvlqklvkaseligeaLvpyyrqlLpvl 129
                  +  + + +n+++++v+  + +++  l ++ + i +a  + y qlL++ 
  KOO24645.1 245 YVRCILTLFNSSSSAVVYECASTMIALSSSATAIKAA-ASSYTQLLATQ 292
                 5666677788999999999999999995555556555.55556777665 PP

  == domain 4  score: 6.4 bits;  conditional E-value: 0.0039
       ParcG  72 ekilpvlpklilplkeaLntrdeeviesaLkvlqklvk 109
                 ++  +vl +li+ + +aL + + ++ +++L+++  lv+
  KOO24645.1 310 KQHPKVLSELIMDILRALASANLDIRKKTLDIILDLVT 347
                 4556899**************************99976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (946 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       673  (0.037537); expected 358.6 (0.02)
Passed bias filter:                      470  (0.0262145); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.72u 0.29s 00:00:01.01 Elapsed: 00:00:00.44
# Mc/sec: 6511.99
//
Query:       KOO24646.1  [L=96]
Description: hypothetical protein Ctob_003745 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (96 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       300  (0.0167327); expected 358.6 (0.02)
Passed bias filter:                      253  (0.0141112); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.23s 00:00:00.56 Elapsed: 00:00:00.37
# Mc/sec: 775.21
//
Query:       KOO24647.1  [L=314]
Description: hypothetical protein Ctob_003746 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.054   13.4   0.4       0.14   12.0   0.4    1.7  1  Wzy_C_2   Virulence factor membrane-bound polymerase, C-termi


Domain annotation for each model (and alignments):
>> Wzy_C_2  Virulence factor membrane-bound polymerase, C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.4     8e-06      0.14     121     172 ..      61     114 ..      49     124 .. 0.83

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 8e-06
     Wzy_C_2 121 lspenlaaklalarkl..ihlsPepavierlilslallGdedeAeqilararal 172
                 ++ e+++++ a+a+++  + +sP+p v+e  i +la +G+ d+A+++l +a ++
  KOO24647.1  61 VNSEMAKRMTAAAQAMkdLVTSPTPIVMEGKIAALARQGRIDDALMQLLEANKQ 114
                 566778888888776644778***************************999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (314 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1204  (0.0671538); expected 358.6 (0.02)
Passed bias filter:                      442  (0.0246528); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.25s 00:00:00.69 Elapsed: 00:00:00.38
# Mc/sec: 2448.64
//
Query:       KOO24648.1  [L=62]
Description: hypothetical protein Ctob_003747 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (62 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       370  (0.020637); expected 358.6 (0.02)
Passed bias filter:                      227  (0.0126611); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.23s 00:00:00.55 Elapsed: 00:00:00.37
# Mc/sec: 507.39
//
Query:       KOO24649.1  [L=703]
Description: kinesin-like protein kif2b [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
      2e-84  283.4   0.0    2.5e-84  283.1   0.0    1.1  1  Kinesin      Kinesin motor domain
    8.1e-16   58.3   0.0    1.3e-15   57.6   0.0    1.3  1  Microtub_bd  Microtubule binding
  ------ inclusion threshold ------
       0.22   11.2   3.4       0.42   10.3   3.4    1.3  1  Casc1_N      Cancer susceptibility candidate 1 N-terminus


Domain annotation for each model (and alignments):
>> Kinesin  Kinesin motor domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  283.1   0.0   4.2e-88   2.5e-84       1     333 []     129     464 ..     129     464 .. 0.92

  Alignments for each domain:
  == domain 1  score: 283.1 bits;  conditional E-value: 4.2e-88
                 EE-SSSHHHHTTTTEBCEEEEC..TCTCEEEEEEEEECTTSCEEEEESEEEETTS-HHHHHHHHHHHHHHHHHT.TSEEEEEEEESTTSSHHHHHTBC. CS
     Kinesin   1 RvRplnekekeeeeeeevevee..ekkeeekkskkenkeeeekkfkFdkvfdeeatqeevyeetakplvesvle.GynatifaYGqtgsGKTyTmegk. 95 
                 R Rpl ++e +++e ++++     +  ++++++ + ++  e+++f+Fd+vfde+a +e vy  ta+plv+ vl  G  +t+faYGqtgsGKTyTmeg  
  KOO24649.1 129 RKRPLLPSELQANEFDVITAFGrrAVLHQTRRRVNLERCLENHSFTFDAVFDEAAGTEAVYAATARPLVRGVLTaGGRMTCFAYGQTGSGKTYTMEGGg 227
                 889*****999999999987764455667777778888899*******************************95499*******************997 PP

                 TTTSBSHHHHHHHHHHHHHHHCTTTHEEEEEEEEEEEEEETTEEEETTSTTTTSTSSEBEEEECTTSCCEEETTS--EEESSHHHHHHHHHHHHHHHTS CS
     Kinesin  96 eeeeeGiipraleelFesikkekeekekefsvkvsylEiYneeiyDLLeskkskkkkklkiredskkgevyvkgltevevksaeevlellekgeknrkv 194
                   +e+G++  + ++ F  +++  +   + +++++s++EiY e+++D L++++  +++k+++ ed+ ++ v++ glte++  +ae+v  lle++++ r++
  KOO24649.1 228 GGAESGLYSLVARDCFAAVEAAAAA-GTPLRLSMSMFEIYRETVFDILTPQP--STSKVSVLEDAASE-VQLVGLTEQRPADAEQVAALLETARAVRRT 322
                 67899**************998887.889*********************95..56679*******86.****************************** PP

                 TTSSCTSHHCCSEEEEEEEEEEEETTTTTC.EEEEEEEEEEEEEEECCCHHHHSS...TCHHHHHHHHHHHHHHHHHHHHHHHHHHTCCTSTSCGGGSH CS
     Kinesin 195 aetklneeSSRSHavftitleqknlkeete.ekvkisklnLvDLAGsErasktga...aegerlkEaaniNkSLlaLgrvisaLaekkkskhipYRdSk 289
                 ++  +ne+SSRSHav++  l+++++++e      + +k++LvDLAGsEra++t +    + +   E+a+iN+SLl L+++i+a+ +   ++h+p+R Sk
  KOO24649.1 323 GSNGVNERSSRSHAVVQFVLRAESTAAEGAtLGATLGKITLVDLAGSERAADTMEarsGDARVHAEGAAINQSLLSLKECIRAMEKG--AHHVPFRGSK 419
                 ************************9998885559*****************99986544456679**********************..********** PP

                 HHHHTGGGHSS.SSEEEEEEEE-TBGGGHHHHHHHHHHHHHHCTT CS
     Kinesin 290 LTrlLqdsLgG.nsktlmivtvspssenleetlstlkfaerakei 333
                 LT++L+ds+    s+t+mi++v p++ + e  l+tl++aer k +
  KOO24649.1 420 LTQVLRDSFLAdASTTVMIAHVAPANCTSESALNTLRYAERLKAV 464
                 *******976527889*************************9975 PP

>> Microtub_bd  Microtubule binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.6   0.0   2.2e-19   1.3e-15      23     149 .]     125     274 ..     122     274 .. 0.83

  Alignments for each domain:
  == domain 1  score: 57.6 bits;  conditional E-value: 2.2e-19
                  EEEEEEECCCS-T.EEEETTT......................TTTEEEE-SEEEECTTHCCCCC.CCCHHHHHHHH.TT--EEEEEEES........ CS
  Microtub_bd  23 Rvfarvrpelesekakikfpe...................eekkkkkefsFdrvfeseseqeevf.eeisqlvqsal.dgynvcifaygqTGsGKtyT 99 
                  Rv +r rp l se  + +f+                    e   ++++f+Fd vf++ + +e v+    + lv  +l  g  ++ faygqTGsGKtyT
   KOO24649.1 125 RVCVRKRPLLPSELQANEFDVitafgrravlhqtrrrvnlERCLENHSFTFDAVFDEAAGTEAVYaATARPLVRGVLtAGGRMTCFAYGQTGSGKTYT 222
                  788888888888753333331223444556666677777777889**************666665166789******99******************* PP

                  ..........ST-HCHHHHHHHHHHCCTSCCCCEEEEEEEEEEESS-EEETT CS
  Microtub_bd 100 meg..eeeeagmipraveeifetiselkekgwkyeielqfveiynekvqDlL 149
                  meg    +e+g    + +  f  ++     g   ++++++ eiy e+v D+L
   KOO24649.1 223 MEGggGGAESGLYSLVARDCFAAVEAAAAAGTPLRLSMSMFEIYRETVFDIL 274
                  ***9889999****************************************98 PP

>> Casc1_N  Cancer susceptibility candidate 1 N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   3.4     7e-05      0.42      10      78 ..      59     127 ..      54     143 .. 0.82

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 7e-05
     Casc1_N  10 RlraeeeererleeerrekeereqlaaeqarrkeeleelkplleerkealeklkaeareaaeWeryvec 78 
                 Rl   + e++rlee+rr ++ ++  a e+a + +e+ e k+++  ++e++ +   +a +aa+ er   c
  KOO24649.1  59 RLSPCAREAQRLEEKRRLRRLEQDTARERAALTDETSEFKEMITLFREKNVTDAVAAGAAASAERLRVC 127
                 67777899********998877777************************99988888887777776555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (703 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       788  (0.0439511); expected 358.6 (0.02)
Passed bias filter:                      358  (0.0199677); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.61u 0.29s 00:00:00.89 Elapsed: 00:00:00.43
# Mc/sec: 4878.93
//
Query:       KOO24650.1  [L=581]
Description: hypothetical protein Ctob_003749 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (581 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       303  (0.0169); expected 358.6 (0.02)
Passed bias filter:                      285  (0.015896); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.52u 0.24s 00:00:00.76 Elapsed: 00:00:00.40
# Mc/sec: 4328.87
//
Query:       KOO24651.1  [L=24]
Description: hypothetical protein Ctob_003735 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (24 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                        85  (0.00474092); expected 358.6 (0.02)
Passed bias filter:                       56  (0.00312343); expected 358.6 (0.02)
Passed Vit filter:                         1  (5.57756e-05); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.25s 00:00:00.54 Elapsed: 00:00:00.40
# Mc/sec: 180.58
//
Query:       KOO24652.1  [L=41]
Description: hypothetical protein Ctob_003734, partial [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (41 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       109  (0.00607954); expected 358.6 (0.02)
Passed bias filter:                       86  (0.0047967); expected 358.6 (0.02)
Passed Vit filter:                         4  (0.000223102); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.24s 00:00:00.55 Elapsed: 00:00:00.37
# Mc/sec: 329.45
//
Query:       KOO24653.1  [L=169]
Description: hypothetical protein Ctob_003737 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (169 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       474  (0.0264376); expected 358.6 (0.02)
Passed bias filter:                      268  (0.0149478); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.23s 00:00:00.60 Elapsed: 00:00:00.38
# Mc/sec: 1330.18
//
Query:       KOO24654.1  [L=257]
Description: hypothetical protein Ctob_003736 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.15   12.4   0.0       0.26   11.6   0.0    1.5  1  Rap1a     Rap1a immunity proteins


Domain annotation for each model (and alignments):
>> Rap1a  Rap1a immunity proteins
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   1.5e-05      0.26      18      57 ..      81     120 ..      62     130 .. 0.91

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 1.5e-05
       Rap1a  18 teWCsarrvkpselreivyeylkklpaerlkerAaslvve 57 
                  +WC++r+++p ++ + + ++l+   + +l ++A  l+v 
  KOO24654.1  81 VSWCTKRGAMPVDIGSQLRQWLAVPHNHQLLTNAGLLIVC 120
                 57*********************************99985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (257 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       343  (0.019131); expected 358.6 (0.02)
Passed bias filter:                      316  (0.0176251); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.28s 00:00:00.67 Elapsed: 00:00:00.42
# Mc/sec: 1855.54
//
Query:       KOO24655.1  [L=2018]
Description: small gtp-binding protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.4e-17   61.6  59.4    1.1e-05   25.7   4.7   11.2 11  LRR_4     Leucine Rich repeats (2 copies)
    1.6e-16   59.8  49.6    3.7e-09   36.2   9.1    9.1 11  LRR_8     Leucine rich repeat
    4.8e-11   42.9   0.0    9.3e-11   42.0   0.0    1.5  1  Roc       Ras of Complex, Roc, domain of DAPkinase
    1.6e-07   30.8  69.9      0.021   14.9   0.1   15.8 18  LRR_6     Leucine Rich repeat
    0.00037   20.1   0.0    0.00076   19.1   0.0    1.5  1  Ras       Ras family
     0.0092   16.4  41.8         12    6.9   0.1   13.1 14  LRR_1     Leucine Rich Repeat
  ------ inclusion threshold ------
      0.084   12.3   0.1       0.47    9.9   0.0    2.0  2  DUF1256   Protein of unknown function (DUF1256)
       0.34   10.4   5.2       0.24   10.9   2.3    2.3  2  LRR_9     Leucine-rich repeat


Domain annotation for each model (and alignments):
>> LRR_4  Leucine Rich repeats (2 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.5   2.4   0.00014      0.32       3      35 ..       8      48 ..       7      54 .. 0.84
   2 !   10.6   0.4   0.00027      0.61       2      33 ..      37      74 ..      36      83 .. 0.78
   3 ?   -1.3   0.0       1.5   3.4e+03      23      38 ..     169     184 ..     162     188 .. 0.72
   4 !   13.4   3.3   3.6e-05     0.081       2      36 ..     399     440 ..     398     444 .. 0.83
   5 !   13.2   2.6   4.2e-05     0.094       1      38 [.     428     467 ..     428     470 .. 0.79
   6 ?    4.1   0.1      0.03        68      25      37 ..     555     566 ..     525     572 .. 0.68
   7 ?   -0.1   0.2      0.61   1.4e+03       7      39 ..     636     673 ..     631     676 .. 0.56
   8 ?    3.8   1.0     0.036        81       4      33 ..     661     693 ..     658     702 .. 0.64
   9 !   14.2   0.7     2e-05     0.044      16      40 ..     765     788 ..     762     794 .. 0.65
  10 !   25.7   4.7   4.9e-09   1.1e-05       2      37 ..     796     831 ..     795     840 .. 0.80
  11 !   11.1   0.2   0.00019      0.42       2      36 ..     842     876 ..     842     879 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.00014
                --EEE--SS---E-S-.HH......H.-TT--EEE-.-S-- CS
       LRR_4  3 LevLdLsnNqltdipl.le......k.lpnLkeLdLsgNnl 35
                L +L+Ls+N l d+ + l+      + ++ L++Ld+s+Nnl
  KOO24655.1  8 LVSLNLSGNLLGDLKGyLRpfgrglGaNKTLTQLDVSNNNL 48
                779*************955566888559********99975 PP

  == domain 2  score: 10.6 bits;  conditional E-value: 0.00027
                S--EEE--SS-.....--.E-S-HHH-TT--EEE-.-S CS
       LRR_4  2 nLevLdLsnNq.....lt.diplleklpnLkeLdLsgN 33
                 L+ Ld snN+     ++   + l+ ++ Lk Ld+s N
  KOO24655.1 37 TLTQLDVSNNNlmpdgIKiVCNALRTCTALKRLDVSYN 74
                699*****999555555533333779*********999 PP

  == domain 3  score: -1.3 bits;  conditional E-value: 1.5
                 TT--EEE-.-S----- CS
       LRR_4  23 pnLkeLdLsgNnlitd 38 
                   Lk+L++  N  ++d
  KOO24655.1 169 STLKTLNIAANGSLGD 184
                 4599999988855555 PP

  == domain 4  score: 13.4 bits;  conditional E-value: 3.6e-05
                 S--EEE--SS---E-S-.......HHH.-TT--EEE-.-S--- CS
       LRR_4   2 nLevLdLsnNqltdipl.......lek.lpnLkeLdLsgNnli 36 
                  L +L+L++N+lt+ +        l++ + nL++Ld+++N li
  KOO24655.1 399 MLHTLCLGSNKLTSNSIgplvvevLRQdNCNLTSLDINSN-LI 440
                 599***********99998666555577*********777.66 PP

  == domain 5  score: 13.2 bits;  conditional E-value: 4.2e-05
                 SS--EEE--SS---E-S-.HH...H.-TT--EEE-.-S----- CS
       LRR_4   1 pnLevLdLsnNqltdipl.le...k.lpnLkeLdLsgNnlitd 38 
                 +nL++Ld+++N +    + +    k +++L+eL+++gN +++d
  KOO24655.1 428 CNLTSLDINSNLIGG--PvITqaiKfNKSLTELNITGN-PLED 467
                 69********9*886..3333456779********999.6654 PP

  == domain 6  score: 4.1 bits;  conditional E-value: 0.03
                 --EEE-.-S---- CS
       LRR_4  25 LkeLdLsgNnlit 37 
                 Lk+LdL++N +++
  KOO24655.1 555 LKTLDLNSN-PLS 566
                 566666444.332 PP

  == domain 7  score: -0.1 bits;  conditional E-value: 0.61
                 E--SS---E-S-......HHH-TT--EEE-.-S-----G CS
       LRR_4   7 dLsnNqltdipl......leklpnLkeLdLsgNnlitdl 39 
                 dLs  +l+ ++       le +   +eL+L+ N  +t+l
  KOO24655.1 636 DLSRRNLSYLSAiflgtlLEMNSTITELSLHTN-ELTPL 673
                 666334555555443443444445999999555.66655 PP

  == domain 8  score: 3.8 bits;  conditional E-value: 0.036
                 -EEE--SS---E-S-....HHH.-TT--EEE-.-S CS
       LRR_4   4 evLdLsnNqltdipl....lek.lpnLkeLdLsgN 33 
                 ++L+L+ N lt ++          p+Lk+LdL +N
  KOO24655.1 661 TELSLHTNELTPLGAkmvvE-RlQPSLKSLDL-NN 693
                 56666644666666666531.22699999999.55 PP

  == domain 9  score: 14.2 bits;  conditional E-value: 2e-05
                 -S-HHH-TT--EEE-.-S-----GG CS
       LRR_4  16 iplleklpnLkeLdLsgNnlitdld 40 
                 i+ l++l nLk+L+L  Nn++t+l+
  KOO24655.1 765 ISTLGQLINLKTLSL-ANNRLTSLP 788
                 566666777777777.555776663 PP

  == domain 10  score: 25.7 bits;  conditional E-value: 4.9e-09
                 S--EEE--SS---E-S-.HHH-TT--EEE-.-S---- CS
       LRR_4   2 nLevLdLsnNqltdipl.leklpnLkeLdLsgNnlit 37 
                  L+vL+L+nN+lt++p  +++l +L++LdL +N ++t
  KOO24655.1 796 GLKVLSLHNNKLTELPIsIGQLESLEKLDLKSN-NLT 831
                 7****************6667*********666.233 PP

  == domain 11  score: 11.1 bits;  conditional E-value: 0.00019
                 S--EEE--SS---E-S-HH.H-TT--EEE-.-S--- CS
       LRR_4   2 nLevLdLsnNqltdiplle.klpnLkeLdLsgNnli 36 
                 +L++Ld s+N+l +++     l n ++L   +N ++
  KOO24655.1 842 SLKILDASDNKLASLDASIcDLMNIEKLEFKDN-PL 876
                 69***************5524*******99656.55 PP

>> LRR_8  Leucine rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.4   4.3      0.43   9.7e+02      24      59 ..      35      74 ..       7      75 .. 0.48
   2 ?   -2.9   0.0       2.6   5.9e+03      25      35 ..     169     179 ..     164     188 .. 0.59
   3 !   11.2   1.3   0.00011      0.24      23      61 .]     425     465 ..     398     465 .. 0.83
   4 ?    0.5   0.0      0.24   5.4e+02      27      37 ..     555     565 ..     548     567 .. 0.59
   5 ?   -1.9   0.1       1.3     3e+03      17      41 ..     621     646 ..     608     653 .. 0.67
   6 ?    1.0   0.2      0.16   3.7e+02       3      34 ..     660     693 ..     658     694 .. 0.77
   7 ?   -2.0   0.0       1.4   3.1e+03      44      61 .]     738     755 ..     732     755 .. 0.84
   8 !   16.3   6.2   2.7e-06     0.006       4      61 .]     746     807 ..     743     807 .. 0.61
   9 !   36.2   9.1   1.6e-12   3.7e-09       2      61 .]     773     830 ..     772     830 .. 0.98
  10 !   34.1   7.3   7.8e-12   1.7e-08       2      61 .]     796     853 ..     795     853 .. 0.97
  11 !   21.3   3.3   7.7e-08   0.00017       2      60 ..     819     875 ..     818     876 .. 0.72

  Alignments for each domain:
  == domain 1  score: -0.4 bits;  conditional E-value: 0.43
                -TT--EEE--SS--....-GGGGGGGTT--S-.EEE--SS CS
       LRR_8 24 lsnLkvLdLsnNll....ttlspgafsgLpsLrsLdLsgN 59
                ++ L+ Ld snN+l      +  +a++ +++L+ Ld+s+N
  KOO24655.1 35 NKTLTQLDVSNNNLmpdgIKIVCNALRTCTALKRLDVSYN 74
                5566666666666522221333455555556666655555 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 2.6
                 TT--EEE--SS CS
       LRR_8  25 snLkvLdLsnN 35 
                 s Lk+L++  N
  KOO24655.1 169 STLKTLNIAAN 179
                 44555555555 PP

  == domain 3  score: 11.2 bits;  conditional E-value: 0.00011
                 T.-TT--EEE--SS---G.GGGGGGTT--S-.EEE--SS-- CS
       LRR_8  23 g.lsnLkvLdLsnNlltt.lspgafsgLpsLrsLdLsgNrL 61 
                 + + nL++Ld+++Nl+   +  +a+   +sL++L+++gN+L
  KOO24655.1 425 QdNCNLTSLDINSNLIGGpVITQAIKFNKSLTELNITGNPL 465
                 44779************99889*****************97 PP

  == domain 4  score: 0.5 bits;  conditional E-value: 0.24
                 --EEE--SS-- CS
       LRR_8  27 LkvLdLsnNll 37 
                 Lk+LdL++N l
  KOO24655.1 555 LKTLDLNSNPL 565
                 44555555433 PP

  == domain 5  score: -1.9 bits;  conditional E-value: 1.3
                 -TTSSTT.-TT--EEE--SS---GGG CS
       LRR_8  17 ddeaFkg.lsnLkvLdLsnNllttls 41 
                 + ++ kg + ++k +dLs+ +l+ ls
  KOO24655.1 621 PVTSLKGsNLKVKAIDLSRRNLSYLS 646
                 44444444566888999988888876 PP

  == domain 6  score: 1.0 bits;  conditional E-value: 0.16
                 -SEEE-TTS--SEE-TTSSTT..-TT--EEE--S CS
       LRR_8   3 LtsLdLsnNrltslddeaFkg..lsnLkvLdLsn 34 
                  t+L+L+ N lt l+ ++      ++Lk+LdL+n
  KOO24655.1 660 ITELSLHTNELTPLGAKMVVErlQPSLKSLDLNN 693
                 6788888888888888887776668899998876 PP

  == domain 7  score: -2.0 bits;  conditional E-value: 1.4
                 GGTT--S-.EEE--SS-- CS
       LRR_8  44 afsgLpsLrsLdLsgNrL 61 
                 a + L sL++L++++++L
  KOO24655.1 738 AVMKLGSLEKLTMDRDHL 755
                 667899*******99987 PP

  == domain 8  score: 16.3 bits;  conditional E-value: 2.7e-06
                 SEEE-TTS--SEE-TT.....SSTT-TT--EEE--SS---GGGGGGGTT--S-.EEE--SS-- CS
       LRR_8   4 tsLdLsnNrltsldde.....aFkglsnLkvLdLsnNllttlspgafsgLpsLrsLdLsgNrL 61 
                 ++L  ++ +l +l+++     +  +l nLk+L+L nN+lt+l p+ +   + L+ L L +N+L
  KOO24655.1 746 EKLTMDRDHLLDLRPDrdsisTLGQLINLKTLSLANNRLTSL-PEDLCLAKGLKVLSLHNNKL 807
                 555555555555555322222666677777777777777777.67777777777777777765 PP

  == domain 9  score: 36.2 bits;  conditional E-value: 1.6e-12
                 T-SEEE-TTS--SEE-TTSSTT-TT--EEE--SS---GGGGGGGTT--S-.EEE--SS-- CS
       LRR_8   2 nLtsLdLsnNrltslddeaFkglsnLkvLdLsnNllttlspgafsgLpsLrsLdLsgNrL 61 
                 nL++L+L nNrltsl+ +     ++LkvL+L nN+lt l p ++ +L+sL++LdL +N+L
  KOO24655.1 773 NLKTLSLANNRLTSLPEDLCL-AKGLKVLSLHNNKLTEL-PISIGQLESLEKLDLKSNNL 830
                 8********************.7****************.9*****************98 PP

  == domain 10  score: 34.1 bits;  conditional E-value: 7.8e-12
                 T-SEEE-TTS--SEE-TTSSTT-TT--EEE--SS---GGGGGGGTT--S-.EEE--SS-- CS
       LRR_8   2 nLtsLdLsnNrltslddeaFkglsnLkvLdLsnNllttlspgafsgLpsLrsLdLsgNrL 61 
                 +L++L+L+nN+lt+l+ +  + l++L+ LdL++N+lt+l p ++s+L sL+ Ld s+N+L
  KOO24655.1 796 GLKVLSLHNNKLTELPISIGQ-LESLEKLDLKSNNLTFL-PTSISQLMSLKILDASDNKL 853
                 69**************99999.*****************.9*****************98 PP

  == domain 11  score: 21.3 bits;  conditional E-value: 7.7e-08
                 T-SEEE-TTS--SEE-TTSSTT-TT--EEE--SS---GGGGGGGTT--S-.EEE--SS- CS
       LRR_8   2 nLtsLdLsnNrltslddeaFkglsnLkvLdLsnNllttlspgafsgLpsLrsLdLsgNr 60 
                 +L++LdL +N+lt l+ +  + l +Lk+Ld s+N+l +l+  ++ +L ++++L   +N+
  KOO24655.1 819 SLEKLDLKSNNLTFLPTSISQ-LMSLKILDASDNKLASLD-ASICDLMNIEKLEFKDNP 875
                 577788888888888777777.788888888888888884.777777777777777766 PP

>> Roc  Ras of Complex, Roc, domain of DAPkinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.0   0.0   4.1e-14   9.3e-11       1     120 []     910    1033 ..     910    1033 .. 0.80

  Alignments for each domain:
  == domain 1  score: 42.0 bits;  conditional E-value: 4.1e-14
                  EEEEESSTTSSHHHHHHCHCT-CCC-E..EETTTTEEEEEEECGGSGGCTTBTTTTCEEEEEEEE-SGGCTTTT-HHHHCTSCEEEEEE...E.... CS
         Roc    1 KvvlvGdsgvGKtsllkrfvedkfsek..ekstigvdfltkevtkikgvendkkvkkvklniWDtaGqerfrslhplylreaalailvy...d.... 88  
                  ++vl+G +++GKtsl + +  +  +++   + ti++d+++  +    ++    + ++v l++WD+aGq ++ +  + y+ + +l++l +   d    
  KOO24655.1  910 RLVLLGHGEAGKTSLQRGLRARAPRPSavDDRTIQLDIYSLVLG---EM---GTPRQVVLSMWDLAGQPQYAAGLQPYIVDGSLYLLTVpalDvhsl 1000
                  589************99888776655422789999999987543...32...3447899***************************97632245554 PP

                  .GHHHHCHHHHHHHHHHHCSSS-EEEEEE-TTT CS
         Roc   89 .srssenlkeWlkelkkvagkspvilvgnkiDl 120 
                   +++s+ l +Wl+ l+  a++++v+ v +k+D+
  KOO24655.1 1001 nASHSDYLGRWLNYLEVGAPNAIVLPVLTKCDM 1033
                  3334567889*********************96 PP

>> LRR_6  Leucine Rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.9   1.0     0.031        70       5      17 ..       8      20 ..       6      21 .. 0.93
   2 !    9.2   0.1   0.00062       1.4       2      20 ..      35      53 ..      34      54 .. 0.89
   3 ?    1.5   0.0      0.18   3.9e+02       2      13 ..      63      74 ..      62      75 .. 0.87
   4 !    5.6   0.1    0.0089        20       2      17 ..     168     184 ..     167     184 .. 0.92
   5 ?   -1.4   0.1       1.6   3.5e+03       2      12 ..     244     254 ..     243     254 .. 0.89
   6 ?   -0.6   0.2      0.87     2e+03       1      10 [.     269     278 ..     269     279 .. 0.89
   7 ?    5.0   0.0     0.013        29       2      21 ..     367     386 ..     366     389 .. 0.88
   8 ?   -0.6   0.4      0.83   1.9e+03       1      17 [.     396     412 ..     396     418 .. 0.85
   9 !   10.2   0.9   0.00029      0.66       2      17 ..     427     442 ..     426     443 .. 0.93
  10 !   14.9   0.1   9.3e-06     0.021       2      20 ..     452     470 ..     451     473 .. 0.95
  11 ?    1.0   0.0      0.27     6e+02       3      18 ..     525     540 ..     523     546 .. 0.80
  12 !   10.6   0.1   0.00022       0.5       4      19 ..     554     569 ..     551     570 .. 0.93
  13 ?    3.0   0.0     0.061   1.4e+02       2      22 ..     657     677 ..     657     679 .. 0.93
  14 ?   -1.3   0.0       1.4   3.2e+03       3      11 ..     684     692 ..     683     693 .. 0.86
  15 ?    1.9   0.6      0.14     3e+02       4      16 ..     773     785 ..     770     786 .. 0.88
  16 ?   -3.2   0.1       5.8   1.3e+04       1       8 [.     803     810 ..     798     812 .. 0.89
  17 ?    4.6   0.3     0.018        41       4      16 ..     819     831 ..     816     831 .. 0.89
  18 ?   -2.5   0.0       3.5   7.8e+03       3      15 ..     841     853 ..     839     854 .. 0.84

  Alignments for each domain:
  == domain 1  score: 3.9 bits;  conditional E-value: 0.031
       LRR_6  5 LteLdLsgNdIgD 17
                L +L+LsgN +gD
  KOO24655.1  8 LVSLNLSGNLLGD 20
                789*********9 PP

  == domain 2  score: 9.2 bits;  conditional E-value: 0.00062
       LRR_6  2 nthLteLdLsgNdIgDeGa 20
                n +Lt Ld+s N++  +G+
  KOO24655.1 35 NKTLTQLDVSNNNLMPDGI 53
                99***********988886 PP

  == domain 3  score: 1.5 bits;  conditional E-value: 0.18
       LRR_6  2 nthLteLdLsgN 13
                +t L+ Ld+s+N
  KOO24655.1 63 CTALKRLDVSYN 74
                6779*******9 PP

  == domain 4  score: 5.6 bits;  conditional E-value: 0.0089
       LRR_6   2 nthLteLdLsgNd.IgD 17 
                 n++L++L+++ N+ +gD
  KOO24655.1 168 NSTLKTLNIAANGsLGD 184
                 9*********9999988 PP

  == domain 5  score: -1.4 bits;  conditional E-value: 1.6
       LRR_6   2 nthLteLdLsg 12 
                 n+++t+L Ls+
  KOO24655.1 244 NPTITSLTLSS 254
                 9******9996 PP

  == domain 6  score: -0.6 bits;  conditional E-value: 0.87
       LRR_6   1 snthLteLdL 10 
                 +nt+L+eL L
  KOO24655.1 269 TNTTLRELRL 278
                 59******88 PP

  == domain 7  score: 5.0 bits;  conditional E-value: 0.013
       LRR_6   2 nthLteLdLsgNdIgDeGae 21 
                 +++L+ LdL+g ++gD G+ 
  KOO24655.1 367 KSTLRVLDLTGIGLGDRGGV 386
                 58**************9986 PP

  == domain 8  score: -0.6 bits;  conditional E-value: 0.83
       LRR_6   1 snthLteLdLsgNdIgD 17 
                 s++ L +L L +N+++ 
  KOO24655.1 396 SCSMLHTLCLGSNKLTS 412
                 589999*******9986 PP

  == domain 9  score: 10.2 bits;  conditional E-value: 0.00029
       LRR_6   2 nthLteLdLsgNdIgD 17 
                 n++Lt+Ld+++N Ig+
  KOO24655.1 427 NCNLTSLDINSNLIGG 442
                 9*************97 PP

  == domain 10  score: 14.9 bits;  conditional E-value: 9.3e-06
       LRR_6   2 nthLteLdLsgNdIgDeGa 20 
                 n +LteL+++gN + DeG+
  KOO24655.1 452 NKSLTELNITGNPLEDEGL 470
                 89****************7 PP

  == domain 11  score: 1.0 bits;  conditional E-value: 0.27
       LRR_6   3 thLteLdLsgNdIgDe 18 
                 t++t L+Ls+ +I   
  KOO24655.1 525 TSVTNLNLSSAGIEPT 540
                 789*******999876 PP

  == domain 12  score: 10.6 bits;  conditional E-value: 0.00022
       LRR_6   4 hLteLdLsgNdIgDeG 19 
                 +L++LdL++N ++D G
  KOO24655.1 554 TLKTLDLNSNPLSDPG 569
                 9*************98 PP

  == domain 13  score: 3.0 bits;  conditional E-value: 0.061
       LRR_6   2 nthLteLdLsgNdIgDeGaea 22 
                 n+++teL+L  N+++  Ga+ 
  KOO24655.1 657 NSTITELSLHTNELTPLGAKM 677
                 99****************986 PP

  == domain 14  score: -1.3 bits;  conditional E-value: 1.4
       LRR_6   3 thLteLdLs 11 
                 ++L++LdL+
  KOO24655.1 684 PSLKSLDLN 692
                 68*****96 PP

  == domain 15  score: 1.9 bits;  conditional E-value: 0.14
       LRR_6   4 hLteLdLsgNdIg 16 
                 +L++L+L+ N ++
  KOO24655.1 773 NLKTLSLANNRLT 785
                 8*********987 PP

  == domain 16  score: -3.2 bits;  conditional E-value: 5.8
       LRR_6   1 snthLteL 8  
                 +n++LteL
  KOO24655.1 803 HNNKLTEL 810
                 79999998 PP

  == domain 17  score: 4.6 bits;  conditional E-value: 0.018
       LRR_6   4 hLteLdLsgNdIg 16 
                 +L++LdL++N+++
  KOO24655.1 819 SLEKLDLKSNNLT 831
                 89*********96 PP

  == domain 18  score: -2.5 bits;  conditional E-value: 3.5
       LRR_6   3 thLteLdLsgNdI 15 
                 ++L+ Ld s+N++
  KOO24655.1 841 MSLKILDASDNKL 853
                 79*****999986 PP

>> Ras  Ras family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.1   0.0   3.4e-07   0.00076       1     117 [.     910    1034 ..     910    1063 .. 0.72

  Alignments for each domain:
  == domain 1  score: 19.1 bits;  conditional E-value: 3.4e-07
                  EEEEEESTTSSHHHHHHHHHHS..SCSSSCTTTSSEEEEEEEEEET..TEEEEEEEEEETTSGGGHHHHHHHHTTESEEEEEEETTBHHHHHTHH.H CS
         Ras    1 KlvlvGdsavGKtslllrfvkd..kFkeeyesTigvdfytkeievd..gkevkleiwDTAGqeefkslrelyyrdaegillvyditsresfenvk.k 92  
                  +lvl+G +  GKtsl         + +   + Ti  d y+  +      ++v l++wD AGq ++ +  + y+ d++  ll+    + +s++  + +
  KOO24655.1  910 RLVLLGHGEAGKTSLQRGLRARapRPSAVDDRTIQLDIYSLVLGEMgtPRQVVLSMWDLAGQPQYAAGLQPYIVDGSLYLLTVPALDVHSLNASHsD 1006
                  58*************97665541155667789**99988876644433899*****************9******9999998766666666655444 PP

                  HHHHHHHHST...TTSEEEEEEETTTGG CS
         Ras   93 wveeikrvae...envpivLvGnKvDle 117 
                  ++    ++ e    n  ++ v +K+D+ 
  KOO24655.1 1007 YLGRWLNYLEvgaPNAIVLPVLTKCDML 1034
                  4444444444332245555578888875 PP

>> LRR_1  Leucine Rich Repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.4   0.1      0.33   7.5e+02       2      14 ..       8      20 ..       7      29 .. 0.83
   2 ?    1.3   0.0      0.36   8.1e+02       2      12 ..      38      48 ..      37      62 .. 0.78
   3 ?    3.3   0.0     0.083   1.9e+02       2      14 ..      66      78 ..      65      86 .. 0.85
   4 ?   -2.8   0.0         8   1.8e+04       2      10 ..     171     179 ..     170     186 .. 0.76
   5 ?   -1.6   0.0       3.4   7.5e+03       2       9 ..     370     377 ..     369     392 .. 0.77
   6 ?   -1.1   0.1       2.3   5.1e+03       2      20 ..     400     415 ..     399     418 .. 0.77
   7 ?    2.7   0.1      0.13     3e+02       1      13 [.     429     441 ..     429     447 .. 0.85
   8 !    6.9   0.1    0.0053        12       1      21 [.     454     474 ..     454     483 .. 0.84
   9 !    6.1   0.0    0.0099        22       2      13 ..     555     566 ..     554     575 .. 0.84
  10 ?   -1.1   0.2       2.4   5.3e+03       1       9 [.     685     693 ..     685     695 .. 0.88
  11 ?    5.0   0.8     0.023        51       1      16 [.     773     788 ..     773     793 .. 0.86
  12 ?    1.8   0.1      0.26   5.9e+02       2      17 ..     797     812 ..     796     816 .. 0.87
  13 ?    4.8   0.4     0.026        58       1      22 [.     819     839 ..     819     840 .. 0.83
  14 ?    0.7   0.0      0.59   1.3e+03       2      15 ..     843     856 ..     842     884 .. 0.62

  Alignments for each domain:
  == domain 1  score: 1.4 bits;  conditional E-value: 0.33
       LRR_1  2 LrhLdLsnnpllg 14
                L +L+Ls+n l++
  KOO24655.1  8 LVSLNLSGNLLGD 20
                779******9954 PP

  == domain 2  score: 1.3 bits;  conditional E-value: 0.36
       LRR_1  2 LrhLdLsnnpl 12
                L+ Ld+snn+l
  KOO24655.1 38 LTQLDVSNNNL 48
                889*******8 PP

  == domain 3  score: 3.3 bits;  conditional E-value: 0.083
       LRR_1  2 LrhLdLsnnpllg 14
                L++Ld+s+n++++
  KOO24655.1 66 LKRLDVSYNSPGR 78
                9*********954 PP

  == domain 4  score: -2.8 bits;  conditional E-value: 8
       LRR_1   2 LrhLdLsnn 10 
                 L++L++  n
  KOO24655.1 171 LKTLNIAAN 179
                 9****9655 PP

  == domain 5  score: -1.6 bits;  conditional E-value: 3.4
       LRR_1   2 LrhLdLsn 9  
                 Lr+LdL++
  KOO24655.1 370 LRVLDLTG 377
                 9*****87 PP

  == domain 6  score: -1.1 bits;  conditional E-value: 2.3
       LRR_1   2 LrhLdLsnnpllglppnsf 20 
                 L +L L++n l+   +ns+
  KOO24655.1 400 LHTLCLGSNKLT---SNSI 415
                 889******984...5555 PP

  == domain 7  score: 2.7 bits;  conditional E-value: 0.13
       LRR_1   1 nLrhLdLsnnpll 13 
                 nL++Ld+++n ++
  KOO24655.1 429 NLTSLDINSNLIG 441
                 8*********874 PP

  == domain 8  score: 6.9 bits;  conditional E-value: 0.0053
       LRR_1   1 nLrhLdLsnnpllglppnsfq 21 
                 +L++L++++npl++ + + + 
  KOO24655.1 454 SLTELNITGNPLEDEGLWLIG 474
                 69**********887777665 PP

  == domain 9  score: 6.1 bits;  conditional E-value: 0.0099
       LRR_1   2 LrhLdLsnnpll 13 
                 L++LdL++npl+
  KOO24655.1 555 LKTLDLNSNPLS 566
                 9*********94 PP

  == domain 10  score: -1.1 bits;  conditional E-value: 2.4
       LRR_1   1 nLrhLdLsn 9  
                 +L++LdL+n
  KOO24655.1 685 SLKSLDLNN 693
                 69*****86 PP

  == domain 11  score: 5.0 bits;  conditional E-value: 0.023
       LRR_1   1 nLrhLdLsnnpllglp 16 
                 nL++L L nn+l++lp
  KOO24655.1 773 NLKTLSLANNRLTSLP 788
                 8***********8776 PP

  == domain 12  score: 1.8 bits;  conditional E-value: 0.26
       LRR_1   2 LrhLdLsnnpllglpp 17 
                 L++L L nn l+ lp+
  KOO24655.1 797 LKVLSLHNNKLTELPI 812
                 9**********87775 PP

  == domain 13  score: 4.8 bits;  conditional E-value: 0.026
       LRR_1   1 nLrhLdLsnnpllglppnsfqn 22 
                 +L++LdL +n+l  ++p s++ 
  KOO24655.1 819 SLEKLDLKSNNL-TFLPTSISQ 839
                 69**********.688888765 PP

  == domain 14  score: 0.7 bits;  conditional E-value: 0.59
       LRR_1   2 LrhLdLsnnpllgl 15 
                 L+ Ld s+n l +l
  KOO24655.1 843 LKILDASDNKLASL 856
                 77788777777322 PP

>> DUF1256  Protein of unknown function (DUF1256)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   0.0   0.00021      0.47      30      57 ..     402     429 ..     388     435 .. 0.90
   2 ?   -1.1   0.0      0.48   1.1e+03      91     114 ..     854     877 ..     845     885 .. 0.86

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.00021
     DUF1256  30 ivciGtdrstgdsLgPlvGtllkekkip 57 
                  +c+G++++t +s+gPlv ++l++ + +
  KOO24655.1 402 TLCLGSNKLTSNSIGPLVVEVLRQDNCN 429
                 59********************999887 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 0.48
     DUF1256  91 iaidaclgeeknigkiviknkplk 114
                   +da++ +  ni+k+  k++pl+
  KOO24655.1 854 ASLDASICDLMNIEKLEFKDNPLQ 877
                 568*******************98 PP

>> LRR_9  Leucine-rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.1       1.6   3.7e+03      23      88 ..     612     672 ..     609     699 .. 0.55
   2 ?   10.9   2.3   0.00011      0.24      60     125 ..     768     830 ..     740     867 .. 0.71

  Alignments for each domain:
  == domain 1  score: -2.7 bits;  conditional E-value: 1.6
       LRR_9  23 eldlrgykipvienlGatldqfdtidlsdndirkldgfPllkrlktlllnnnrivriaegleevlP 88 
                 el l g k+pv    G+ l +  +idls  ++  l  +     l tll  n  i+ ++   +e  P
  KOO24655.1 612 ELTLEGGKLPVTSLKGSNL-KVKAIDLSRRNLSYLSAIF----LGTLLEMNSTITELSLHTNELTP 672
                 7778888888765555555.6788888887777776643....23333333333333333333333 PP

  == domain 2  score: 10.9 bits;  conditional E-value: 0.00011
       LRR_9  60 fPllkrlktlllnnnrivriaegleevlPnleelvltnnelqeladldPlaslkklellsllknpv 125
                 +  l  lktl+l+nnr++ + e+l      l+ l l nn+l+el     + +l++le l l +n +
  KOO24655.1 768 LGQLINLKTLSLANNRLTSLPEDLC-LAKGLKVLSLHNNKLTELPI--SIGQLESLEKLDLKSNNL 830
                 5556778888889999888888886.45678888888888888853..344444444444444443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (2018 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       669  (0.0373138); expected 358.6 (0.02)
Passed bias filter:                      521  (0.0290591); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 1.06u 0.29s 00:00:01.35 Elapsed: 00:00:00.46
# Mc/sec: 13071.14
//
Query:       KOO24656.1  [L=1553]
Description: hypothetical protein Ctob_003738 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
     0.0092   15.9   0.1      0.043   13.7   0.1    2.2  1  NACHT     NACHT domain
  ------ inclusion threshold ------
      0.049   14.0   0.2       0.27   11.6   0.0    2.2  2  AAA_19    AAA domain
      0.057   13.9   0.0       0.19   12.2   0.0    1.9  1  AAA       ATPase family associated with various cellular acti
      0.088   12.1   0.6       0.22   10.8   0.6    1.6  1  DUF512    Protein of unknown function (DUF512)


Domain annotation for each model (and alignments):
>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.7   0.1   9.5e-06     0.043       3     158 ..     599     760 ..     597     766 .. 0.64

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 9.5e-06
                 EEEEC-TTTCHHHHHHHHHHHHCTS-SCCCC.....-SEEEEEETTTT...TTS-.....-HCHHHCCCCTS--SSS-C...CHHHHC.CSCCCEE.EE CS
       NACHT   3 vilqGeaGsGKTtLlqklalawaegklpqga.....fklvFflslrel...srsgna..rsladllfsqlpepaapvse...vwavll.elperlL.li 86 
                 v+++  +G GKT ++++ ++++a++ l +         ++++++++++    r+  a   s  + l   + e+    ++      +l+ + + r+L  +
  KOO24656.1 599 VLVRAGPGTGKTWMAKQAVFTLADRLLRGAGandgiRLVPIVVFVQRIiylLREASAsnQSKHQSLLGRYIESMYSGKKfqsWCDMLMqAYEMRALiVL 697
                 566667899999999998888888877664455565455555555553111222222454444444444444444433344333444404455666478 PP

                 EE-STT-SS-TCH.........HHHHHCTTTTT.--EEEEEEECCCHHHHCTTSSCE..EEEE--TCCHHHHH CS
       NACHT  87 lDglDelvtdlgqkekqpvrtlLselirkkllp.easllltvrpralrdleeqleeaivlevegfsesrrkql 158
                 lDg+De++   +q         + e + k ++p ++++l+t+rp++   l +++++  v+ +  ++ ++ +++
  KOO24656.1 698 LDGVDEAAGLREQ---------IDEFVHKDIVPsGNRVLVTTRPEGI-LLSSYIKTFVVMNLCQLTNEQQRRV 760
                 9*******98888.........9****999876379*********98.7888888887777777777776665 PP

>> AAA_19  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0     6e-05      0.27       9      35 ..     595     621 ..     589     655 .. 0.87
   2 ?   -1.2   0.1       0.5   2.2e+03      82     136 ..     929     980 ..     844     991 .. 0.71

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 6e-05
      AAA_19   9 kekvllvtaGpGtGKTrvlkhivallv 35 
                 ++ ++lv aGpGtGKT + k++v  l 
  KOO24656.1 595 PALPVLVRAGPGTGKTWMAKQAVFTLA 621
                 56689***********99998886665 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 0.5
      AAA_19  82 dlltealelleeaeeekklqeeellivDEfqdvdelqyrLlkallgekkklllvG 136
                 +++ +a e+le  +  + + ++ +   DE+ +v e +  ++k+++  k  ++ vG
  KOO24656.1 929 KKEIQAKEALEV-KAAEAMWKTMCQRTDEIYMVAEHMEPVFKKVV-AKL-VTEVG 980
                 333344555553.33444436667788999999999999999988.333.55566 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   4.2e-05      0.19       2      85 ..     600     719 ..     599     725 .. 0.70

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 4.2e-05
                 EEESSTTSSHHHHHHHHHHHH........THE...................EEEEETTTCSSS..............STTHHHHHHHHHHHHHHHTSTS CS
         AAA   2 llyGppGtGKTllakavakel........gve...................fleisgsellsk..............yvgesekkirelfkeakekakp 59 
                 l+   pGtGKT +ak+ + +l        g                     + e s+s+   +              y g++ ++  +++ +a e++  
  KOO24656.1 600 LVRAGPGTGKTWMAKQAVFTLadrllrgaG-AndgirlvpivvfvqriiylLREASASN---QskhqsllgryiesmYSGKKFQSWCDMLMQAYEMR-A 693
                 66677**********999997343344331.0355556666665555555433333333...134577777788888***************99998.8 PP

                 EEEEEETGGGHHHHHTTCCCHHHHHH CS
         AAA  60 silfiDEidalaksrsgseseeeerv 85 
                  i+++D +d+ a+ r++ ++ +++++
  KOO24656.1 694 LIVLLDGVDEAAGLREQIDEFVHKDI 719
                 ***********999966566666555 PP

>> DUF512  Protein of unknown function (DUF512)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.6   4.8e-05      0.22       9      59 ..     914     964 ..     910     970 .. 0.93

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 4.8e-05
      DUF512   9 reglaelepftkeearevieqveklqkkllkelgtrfvflsDEfYllAere 59 
                 +e+l++le++t+++ ++ i++ e+l+ k+ + + ++++   DE Y++Ae+ 
  KOO24656.1 914 KEELQKLEATTDKKKKKEIQAKEALEVKAAEAMWKTMCQRTDEIYMVAEHM 964
                 6899********************************************975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1553 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       969  (0.0540465); expected 358.6 (0.02)
Passed bias filter:                      566  (0.031569); expected 358.6 (0.02)
Passed Vit filter:                        49  (0.002733); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.99u 0.30s 00:00:01.29 Elapsed: 00:00:00.47
# Mc/sec: 9929.53
//
Query:       KOO24657.1  [L=278]
Description: 2 -cyclic nucleotide 3 -phosphodiesterase family protein, partial [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.8e-12   47.7   0.1    2.8e-12   47.0   0.1    1.3  1  AAA_33           AAA domain
     0.0053   17.3   0.0       0.01   16.4   0.0    1.4  1  AAA_18           AAA domain
  ------ inclusion threshold ------
      0.018   14.8   0.0      0.025   14.3   0.0    1.3  1  Viral_helicase1  Viral (Superfamily 1) RNA helicase
      0.021   15.1   0.0      0.043   14.1   0.0    1.5  1  AAA_22           AAA domain
      0.037   13.5   0.0        7.9    5.8   0.0    2.2  2  KTI12            Chromatin associated protein KTI12


Domain annotation for each model (and alignments):
>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.0   0.1   7.7e-16   2.8e-12       4     142 ..       1     173 [.       1     175 [. 0.79

  Alignments for each domain:
  == domain 1  score: 47.0 bits;  conditional E-value: 7.7e-16
      AAA_33   4 lvGlpGsGKstlaerllkklgavllssdt...............................lrrrlfg..tdqqskt...........dytrvldr.... 54 
                 + GlpG+GKst  ++ll+  +++ll+s +                               +++ ++   +                 d      r    
  KOO24657.1   1 MRGLPGCGKSTATRQLLA--AWELLASQSshvssrtavcsadvffengagltrrqlhelaASKGMRSpdE-----AaqhggiyrlcfD------Rsklg 86 
                 79**************94..57777666667776669999999999999986666665554444444333.....1444555555543......33344 PP

      AAA_33  55 .lyqilnelarkalsagrn.vildatnlsrrerarflklarrlgvpvrivvvetdee..tlkeRlakRaangddrsevpeealdrqkarfer 142
                  +++  ++ ++ al+a+ + vi+d+tn++ +e +++ + arr g++v++v +++++e    +++l++R+ +g     vp+e+l +++ar e+
  KOO24657.1  87 aAHESCRRAFENALRARTGlVIVDNTNTQLKEYDNYKHTARREGYAVAVVELRCPDEpgIFEQQLHARNTHG-----VPMEVLRTMIARWEP 173
                 48888899999999999998999********************************9855799********84.....9**********9886 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   0.0   2.9e-06      0.01       5     104 ..       3     143 ..       2     146 .. 0.71

  Alignments for each domain:
  == domain 1  score: 16.4 bits;  conditional E-value: 2.9e-06
      AAA_18   5 GtpGvGKttlakeL..........skrlgf......................gvnlrdvakenglllevdpealdeskrldedkldklldaleenss.. 69 
                 G pG+GK+t ++ L          s    +                       ++l ++a+ +g++ +++++++    rl  d+  kl  a+e +++  
  KOO24657.1   3 GLPGCGKSTATRQLlaawellasqS----ShvssrtavcsadvffengagltRRQLHELAASKGMRSPDEAAQHGGIYRLCFDR-SKLGAAHESCRRaf 96 
                 99************88766666541....0445566668899999999988888888888888888888888333333333333.34444444444477 PP

      AAA_18  70 ...aleegknlvidghlaeleseaakdikk.........vvLtaspe 104
                     ++  + +++d    +l ++++ ++           v L++++e
  KOO24657.1  97 enaLRARTGLVIVDNTNTQLKEYDNYKHTArregyavavVELRCPDE 143
                 77667777888999999999988776544489999999999999997 PP

>> Viral_helicase1  Viral (Superfamily 1) RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   0.0   6.9e-06     0.025       4      22 ..       2      20 ..       1      83 [. 0.83

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 6.9e-06
  Viral_helicase1  4 hGvpGcGKStlirkllrts 22
                      G pGcGKSt+ r+ll   
       KOO24657.1  2 RGLPGCGKSTATRQLLAAW 20
                     599************9764 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   0.0   1.2e-05     0.043      12     100 ..       3     112 ..       2     128 .. 0.69

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 1.2e-05
      AAA_22  12 GesGtGKTtllrrlleqldeeakaee...erpevv.fvtlpsst....sskdllrellralglelka....................erlsseelleal 82 
                 G +G+GK+t  r+ll   +  a++       ++ v + ++  ++    ++++l +  +++      +                     ++  e +++a+
  KOO24657.1   3 GLPGCGKSTATRQLLAAWELLASQSShvsS-RTAVcSADVFFENgaglTRRQLHELAASKGM----RspdeaaqhggiyrlcfdrskLGAAHESCRRAF 96 
                 88***********99986555444446532.2222333333333222245555444444333....244469*************98888899999*** PP

      AAA_22  83 eqalraravielliiDEa 100
                 e+alrar    l+i+D+ 
  KOO24657.1  97 ENALRARTG--LVIVDNT 112
                 **9999977..*****85 PP

>> KTI12  Chromatin associated protein KTI12
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.8   0.0    0.0022       7.9       7      32 ..       2      27 ..       1      64 [. 0.73
   2 ?    5.5   0.0    0.0027       9.8      56     138 ..      88     172 ..      76     182 .. 0.75

  Alignments for each domain:
  == domain 1  score: 5.8 bits;  conditional E-value: 0.0022
                E--TTSSHHHHHHHHHHHHHHTT--E CS
       KTI12  7 tGlPssGKstrakeLakaleeekrsv 32
                 GlP  GKst++++L  a e    + 
  KOO24657.1  2 RGLPGCGKSTATRQLLAAWELLASQS 27
                69*************88877633333 PP

  == domain 2  score: 5.5 bits;  conditional E-value: 0.0027
                 HHHHHHHHHHHHHT.T.SEEEE-S---SHHHHHHHH.HHHHHTT-EEEEEEEE--HHH.HHHHHHHTT-S..S-HHHHHHHHHH-- CS
       KTI12  56 lRsslrsavkrdLs.kekvVIvDslnyikgfRYeLy.ciakaakttlcvvyvvapldv.lvkwneereekeeyekelldaLiqRye 138
                 + +s r+a + +L  ++ +VIvD++n  +   Y+ y   a+     ++vv + +p +  +++ + +  + ++ + e+l  +i R+e
  KOO24657.1  88 AHESCRRAFENALRaRTGLVIVDNTNT-QLKEYDNYkHTARREGYAVAVVELRCPDEPgIFEQQLHARNTHGVPMEVLRTMIARWE 172
                 5667777777888526679******95.44556666247899999999**9999977515555555666678999*******9998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (278 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       395  (0.0220313); expected 358.6 (0.02)
Passed bias filter:                      320  (0.0178482); expected 358.6 (0.02)
Passed Vit filter:                        47  (0.00262145); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.44u 0.26s 00:00:00.70 Elapsed: 00:00:00.42
# Mc/sec: 2005.39
//
Query:       KOO24658.1  [L=667]
Description: glucosylceramidase, partial [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.2e-71  240.7   0.4      3e-71  240.2   0.4    1.2  1  Glyco_hydro_30   Glycosyl hydrolase family 30 TIM-barrel doma
    6.9e-06   25.5   0.6    1.2e-05   24.7   0.6    1.3  1  Glyco_hydro_59   Glycosyl hydrolase family 59
    1.6e-05   25.5   0.0     0.0003   21.4   0.1    2.6  2  RicinB_lectin_2  Ricin-type beta-trefoil lectin domain-like
    1.6e-05   25.1   0.0     0.0085   16.3   0.0    2.9  2  Ricin_B_lectin   Ricin-type beta-trefoil lectin domain
    3.5e-05   23.9   0.1    7.1e-05   22.9   0.1    1.6  1  Glyco_hydro_30C  Glycosyl hydrolase family 30 beta sandwich d


Domain annotation for each model (and alignments):
>> Glyco_hydro_30  Glycosyl hydrolase family 30 TIM-barrel domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  240.2   0.4   8.3e-75     3e-71       2     348 .]      71     434 ..      70     434 .. 0.85

  Alignments for each domain:
  == domain 1  score: 240.2 bits;  conditional E-value: 8.3e-75
                     -EEEEE--HHHHHHHHTS-HHHHHHHHHHHHS...TTTT---EEEEEES--SSSSS---ST-STT-TT-TT----.HHHH.TTHHHHHHHHHHH- CS
  Glyco_hydro_30   2 kGfGstlsdasganlkslsdkladlllkqyfs...deGlnlqigrvpiastdfssrvytyddtaddyslanfslt.kedt.klkipyikraqkyn 91 
                      GfG+++++a+++n ksls + +  +++ yf+   + Gl++ +grvpi s+dfs+  yt+dd+  d +l +f+ t + d+ +  ip++  aq+  
      KOO24658.1  71 AGFGGAFTEAAALNWKSLSSEDQAEIIRLYFAspaEGGLGYTLGRVPINSCDFSVESYTFDDVEGDVDLVHFDNTvQHDVdNSMIPFMAAAQQKV 165
                     69*****************************644478***********************************743255551678*******9865 PP

                     SS....-EEEEEES---GGGBTTSSS....SSS-BBS.S-TTS...HHHHHHHHHHHHHHHHHHHTT--ESEEESSSSGGGGGSTT-SSS--B-- CS
  Glyco_hydro_30  92 qd....lkllaapwaapgwlkttkav....kGkGalk.Gkagd...iyhkayakyfvkfleeyaksklsfwglsteneptaGsdkktklqslgft 174
                     +     lklla+pw+ p+w+k    v    k +  ++  +++       + +akyf k++ +y+ +++ +w+++ +nep a      + +++++t
      KOO24658.1 166 KArgaeLKLLASPWSPPAWMKVPVPVwwdaKNQSQVRsARPNGllpEMQRPWAKYFSKWITAYKSHGIDIWAVTVQNEPEAAP----NWEAMLWT 256
                     422345***************875441111333333313333322257899****************************9865....57899*** PP

                     HHHHHHHHHHTHHHHHHTSTT.TTSEEEEEEEEGGGTTHHHHHHHTSHHHHTTEEEEEEEETTTS-HHHHHHHHHHHSTTSEEEEEEEES..S-S CS
  Glyco_hydro_30 175 aetqrdfikrdlGpalaassagknvkllilddnrgnlpkwadvvlndkdaakyvsGiavhayqdaeadkhldethkkfpnvlllgtease..Gsk 267
                     +e+   f++  lGp l+a      v ++ +d n+  +  w++ + +d+ a ky+ G+avh+y      ++ld +h   p+  +l+tea++  G  
      KOO24658.1 257 PEFMATFVRDHLGPVLEADHP--SVGIFGFDHNKDHVVGWTQGLYADEAAKKYMRGVAVHWYGGL-NGANLDAAHAIAPEKEILATEACNciGNV 348
                     ****************99876..9**************************************865.5678******************8722555 PP

                     TTS-SS-TT-HHHHHHHHHHHHHHHHTTEEEEEEEESEB-TTS---TT---B--SEEEEGGGTE.....EEE-HHHHHHHHHHTTS CS
  Glyco_hydro_30 268 skdqsvdyGsfdraadyasdildnlnnwvvGwternlvldaeGGpswvsdfvdapviafialaq.....fykqpmfyalahfskfi 348
                        +      + ra+  a d++++l++w +Gw ++nl++ ++GGp+ +++ +da +ia++   +     f kq  fy ++ fs+++
      KOO24658.1 349 VLRTPSLAAWWTRAELLALDMIEDLKHWATGWIDWNLIVSPQGGPNHLKNLCDANIIADPQNTTgfgtnFIKQASFYYMGQFSRYL 434
                     566666667799***********************************************987533333399************986 PP

>> Glyco_hydro_59  Glycosyl hydrolase family 59
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.7   0.6   3.3e-09   1.2e-05      81     221 ..     163     350 ..     148     399 .. 0.72

  Alignments for each domain:
  == domain 1  score: 24.7 bits;  conditional E-value: 3.3e-09
  Glyco_hydro_59  81 keAkkrnpdikldileWgaPgwlk.....................ksaekasektaeylkswlkgakktygldidyiaglrnek........... 143
                     + +k+r  ++kl + +W+ P+w+k                     +   ++++  a+y+++w+++  k++g+di  +  ++ne            
      KOO24658.1 163 QKVKARGAELKLLASPWSPPAWMKvpvpvwwdaknqsqvrsarpnGLLPEMQRPWAKYFSKWITAY-KSHGIDIWAV-TVQNEPeaapnweamlw 255
                     5679999**************************99999888766433345566679*******665.88********.65555534444433333 PP

  Glyco_hydro_59 144 ..eydkdy.vktlrkaLdkngykkvklvaadeaat..wsiakelakdselkdavdvvglHytt.....eksssn....aealgkplwasEd.... 220
                       e  +++  ++l ++L ++++ +v + + d++++  +  ++ l +d++ k+ +  v++H+       +         a a +k++ a+E+    
      KOO24658.1 256 tpEFMATFvRDHLGPVL-EADHPSVGIFGFDHNKDhvVGWTQGLYADEAAKKYMRGVAVHWYGglngaN----LdaahAIAPEKEILATEAcnci 345
                     33334555234555554.57899********5555579999*******************888664422....1234477888889999995554 PP

  Glyco_hydro_59 221 ....l 221
                         l
      KOO24658.1 346 gnvvL 350
                     44440 PP

>> RicinB_lectin_2  Ricin-type beta-trefoil lectin domain-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.8   0.0      0.24   8.5e+02      30      64 ..     456     491 ..     435     505 .. 0.64
   2 !   21.4   0.1   8.4e-08    0.0003       2      74 ..     544     623 ..     543     628 .. 0.87

  Alignments for each domain:
  == domain 1  score: 0.8 bits;  conditional E-value: 0.24
                      CCTBCTTEEEEEE-TT.T-GGCEEEEECCESSEEEE CS
  RicinB_lectin_2  30 ggstanganvqqwtcs.gaanqqWrledtgdgtyri 64 
                      ++  +nga ++  +c  ++a q++rl+  ++gt+ +
       KOO24658.1 456 SADIKNGAGLVFMPCEkDSAVQLFRLTHRDSGTFIV 491
                      555556666666677666677778777666666544 PP

  == domain 2  score: 21.4 bits;  conditional E-value: 8.4e-08
                      CGEEEECETTTTEEEEECTSSSEEE.ECGCCTBC.........TTEEEEEE-TTT-GGCEEEEECCESSEEEEEETTTTEEEE CS
  RicinB_lectin_2   2 nQqWtlgsggdgyytiknvasgkvL.dvaggsta.........nganvqqwtcsgaanqqWrledtgdgtyrivnkasgkvLd 74 
                      nQ W+++   dg  +i+n a gk+L +v+ ++ +         +ga++ +++ +g++nq++ +   g+g ++++++  g +L 
       KOO24658.1 544 NQAWEVK-AVDGGSQIVNPAIGKCLtAVKTAGWTvgldaglqvTGAQAFPCYPAGTKNQTFVI--SGEGDVTVKSADDGNCLA 623
                      9*****4.56788************97777776679999999999*******9*********9..57779********99996 PP

>> Ricin_B_lectin  Ricin-type beta-trefoil lectin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.0   2.4e-06    0.0085      23     105 ..     462     571 ..     454     581 .. 0.78
   2 !    5.1   0.0    0.0073        26      26      59 ..     588     623 ..     579     631 .. 0.76

  Alignments for each domain:
  == domain 1  score: 16.3 bits;  conditional E-value: 2.4e-06
                     TEBEEEEE-TSCCGGGEEEEE..TTSEEEETT.............TTEEEEES..SSSTTSBEEEEETTT.........TSGGGCEEEET..TTT CS
  Ricin_B_lectin  23 gapvglydChgskgkQlwtlt..kdgeirska............qselCldvs..staegakvvlakChk.........gkgnqrWefdk..dgt 90 
                     ga ++  +C++ ++ Ql++lt  + g++ + a             ++ C+++   ++    k++l++C++         ++gnq We++    g+
      KOO24658.1 462 GAGLVFMPCEKDSAVQLFRLThrDSGTFIVAAgtneapgsdgygMGGECVEICisGECWFPKIQLWTCKQesnpdalhgATGNQAWEVKAvdGGS 556
                     77788889988855599999964447777666777778888888788888877777888899*******9*******96666*****87522677 PP

                     EEEETTTSEEEEEST CS
  Ricin_B_lectin  91 qirhkksgkCLdvkg 105
                     qi+++  gkCL++ +
      KOO24658.1 557 QIVNPAIGKCLTAVK 571
                     7**********9865 PP

  == domain 2  score: 5.1 bits;  conditional E-value: 0.0073
                     EEEEE-TSCCGG.GEEEEETTSEEEETT..TTEEEE CS
  Ricin_B_lectin  26 vglydChgskgk.Qlwtltkdgeirska.qselCld 59 
                     ++ ++C  +++k Q + ++++g++ +k+ +++ Cl+
      KOO24658.1 588 AQAFPCYPAGTKnQTFVISGEGDVTVKSaDDGNCLA 623
                     566788444444499999999999998888999996 PP

>> Glyco_hydro_30C  Glycosyl hydrolase family 30 beta sandwich domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.9   0.1     2e-08   7.1e-05      16      49 ..     631     665 ..     611     667 .] 0.87

  Alignments for each domain:
  == domain 1  score: 22.9 bits;  conditional E-value: 2e-08
  Glyco_hydro_30C  16 nvetvAFlnp.DGsivvvilNrsessvtitvsdss 49 
                       +++vAF  p DG +++v++N+++++ +it++d +
       KOO24658.1 631 HFDAVAFEHPdDGEVAMVVMNTNDDAMDITIKDAT 665
                      589******8359999***************9964 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (667 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       446  (0.0248759); expected 358.6 (0.02)
Passed bias filter:                      399  (0.0222544); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.57u 0.25s 00:00:00.82 Elapsed: 00:00:00.41
# Mc/sec: 4861.95
//
Query:       KOO24659.1  [L=426]
Description: zinc carboxypeptidase family protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.8e-19   70.7   0.0    2.7e-18   66.8   0.0    2.4  3  Peptidase_M14  Zinc carboxypeptidase
  ------ inclusion threshold ------
      0.058   12.5   0.1      0.087   11.9   0.1    1.3  1  AstE_AspA      Succinylglutamate desuccinylase / Aspartoacyla


Domain annotation for each model (and alignments):
>> Peptidase_M14  Zinc carboxypeptidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.8   0.0     3e-22   2.7e-18      22     137 ..      44     171 ..      35     206 .. 0.93
   2 ?    0.6   0.0     0.043   3.9e+02     240     266 ..     251     277 ..     241     296 .. 0.83
   3 ?   -2.5   0.0       0.4   3.6e+03     203     250 ..     319     379 ..     277     387 .. 0.59

  Alignments for each domain:
  == domain 1  score: 66.8 bits;  conditional E-value: 3e-22
                    EE-TTS-EEEEEEE-SSTT...........................STTST-CEEEEEE-SSTT-HHHHHHHHHHHHHHHHHTTTSHHHHHHHHHE CS
  Peptidase_M14  22 GkSvegRplkvlkisssat...........................eaeegkpvvlidggiHarEwigsalllylleqLlsaYgedeeikellddt 90 
                     +S egR +++++i+  ++                           +a ++kpvvl+++++H++E+ +s++l  ll  L+++  +d+++  l++++
     KOO24659.1  44 CRSLEGRRIDLITITGTNGlpeaepeaplpapllpeassrdgharpHAFPNKPVVLVSARVHPGETPASHVLDGLLAFLVRT--DDPRAAALRERF 137
                    58*************9988***************************9**********************************9..************ PP

                    EEEEES-STHHHHHHHHHT-TTTTST-SBCTTSSSBS--GGGSSSSS CS
  Peptidase_M14  91 diyilpvlNPDGyeysstedrlwrknrsnakessceGvDlnRnFpdl 137
                    ++ ++p+lNPDG+ + ++        r +++     Gv+lnR + + 
     KOO24659.1 138 VFKLIPMLNPDGVFRGHY--------RTDTR-----GVNLNRVYLEA 171
                    *****************7........99999.....******99554 PP

  == domain 2  score: 0.6 bits;  conditional E-value: 0.043
                    ---SS-HHHHHHHHTT-SEEEEEEESS CS
  Peptidase_M14 240 yeasggmddwayertgvkfeytlelrd 266
                     +++g+++  +y++tg+++ ytle   
     KOO24659.1 251 QRMEGSARAAVYKHTGLPTVYTLECNY 277
                    578899999**************9875 PP

  == domain 3  score: -2.5 bits;  conditional E-value: 0.4
                    TTHHHHHHHHHHHHHHHCHTTT..............TEEE-EEEEEHHHHT---SS-HHHHH CS
  Peptidase_M14 203 pddeelkslarkyaealqkmvr..............gteylsegitngaliyeasggmddwa 250
                     d++ +++++++ a a   m +              +t++ ++ + +++ + +++g++++wa
     KOO24659.1 319 YDEACYQEIGKALALAVLDMAAanpasrlgprdsweDTSEETV-RYYYKGLAKTRGAIRQWA 379
                    3333366666666666666655555444544333222221112.233334666666666665 PP

>> AstE_AspA  Succinylglutamate desuccinylase / Aspartoacylase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.1   9.7e-06     0.087       3      73 ..      96     174 ..      94     219 .. 0.78

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 9.7e-06
                 -EEEEEE-SSTT-HHHHHHHHHHHHHHHCCC.....ESCCEE...EEEESSHHHHHCTSSSSSTT-S-CTTTTTCCCCC CS
   AstE_AspA   3 pkvlisAGvHGnElaGvellrqllkqleead.....ilgeit...lvplaNppAiaagsRyipidredLNRaFpgrslg 73 
                 p vl+sA vH  E+ + ++l+ ll  l + d      l+e+    l+p+ Np ++ +g+ + ++   +LNR++ + s  
  KOO24659.1  96 PVVLVSARVHPGETPASHVLDGLLAFLVRTDdpraaALRERFvfkLIPMLNPDGVFRGHYRTDTRGVNLNRVYLEASAA 174
                 7899*****************999999998876556445554234679******999996666699*******877665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (426 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       484  (0.0269954); expected 358.6 (0.02)
Passed bias filter:                      419  (0.02337); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.49u 0.26s 00:00:00.75 Elapsed: 00:00:00.42
# Mc/sec: 3070.99
//
Query:       KOO24660.1  [L=153]
Description: hypothetical protein Ctob_001896, partial [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    0.00048   20.6   0.0    0.00073   20.0   0.0    1.3  1  PH        PH domain


Domain annotation for each model (and alignments):
>> PH  PH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.0   0.0   4.1e-08   0.00073      15     101 ..      60     143 ..      41     147 .. 0.77

  Alignments for each domain:
  == domain 1  score: 20.0 bits;  conditional E-value: 4.1e-08
                 SC...SEEEEEEEEETTE.EEEESSTTCTTESSE...EEEEESTTEEEEEEECTTSSSSTSEEEEEESTSSSTEEEEEEES..SHHHHHHHHHHHH CS
          PH  15 kk...swkkrwfvLkdse.llyykndksekdkep...kgsislsncevvevvatedpkrkfcfelriverngsrtyllqas..seeerkeWikaiq 101
                 +k    w+ r++vL d++ +++y+     ++ ep   +g i+l+n+++ve     +     +f+++ +    +++yl++ +  +e  +++Wi ai+
  KOO24660.1  60 AKdelEWETRYVVLYDTRkMCLYDGM---QNGEPvgdRGLIDLENIQSVE-----KVLGVPTFVMKGY----KKVYLFKLEphDEVLMHTWIGAIS 143
                 336779*********9999*******...888887779999999999998.....6788888888777....467777666547777899998886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (153 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       283  (0.0157845); expected 358.6 (0.02)
Passed bias filter:                      274  (0.0152825); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.23s 00:00:00.63 Elapsed: 00:00:00.40
# Mc/sec: 1135.51
//
Query:       KOO24661.1  [L=224]
Description: hypothetical protein Ctob_001897 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (224 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       427  (0.0238162); expected 358.6 (0.02)
Passed bias filter:                      294  (0.016398); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.40u 0.24s 00:00:00.64 Elapsed: 00:00:00.39
# Mc/sec: 1713.74
//
Query:       KOO24662.1  [L=395]
Description: hypothetical protein Ctob_001894, partial [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.12   12.1   0.2        1.2    9.0   0.0    2.7  3  DUF3368   Domain of unknown function (DUF3368)


Domain annotation for each model (and alignments):
>> DUF3368  Domain of unknown function (DUF3368)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.0     0.073   1.3e+03       5      15 ..      13      23 ..      12      24 .. 0.88
   2 ?   -1.7   0.0      0.15   2.6e+03      19      28 ..     213     222 ..     210     224 .. 0.78
   3 ?    9.0   0.0   6.7e-05       1.2      13      44 ..     244     273 ..     239     275 .. 0.80

  Alignments for each domain:
  == domain 1  score: -0.8 bits;  conditional E-value: 0.073
     DUF3368  5 LGiLllAKqrG 15
                LG+L +A++r 
  KOO24662.1 13 LGLLAWAYRRH 23
                9*******985 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 0.15
     DUF3368  19 svkplldaLi 28 
                 +v++++daL 
  KOO24662.1 213 KVQEIIDALS 222
                 4899999993 PP

  == domain 3  score: 9.0 bits;  conditional E-value: 6.7e-05
     DUF3368  13 qrGlIpsvkplldaLiqaGfrispklyaevLr 44 
                 +++++p  + +ld+++++Gfr++++ +  +L 
  KOO24662.1 244 EQRILP--NGALDRITEQGFRLPADEVGALLD 273
                 556666..789*************99988876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (395 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       703  (0.0392102); expected 358.6 (0.02)
Passed bias filter:                      497  (0.0277205); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.50u 0.24s 00:00:00.74 Elapsed: 00:00:00.41
# Mc/sec: 2887.64
//
Query:       KOO24663.1  [L=100]
Description: hypothetical protein Ctob_001895 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (100 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       258  (0.0143901); expected 358.6 (0.02)
Passed bias filter:                      230  (0.0128284); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.25s 00:00:00.59 Elapsed: 00:00:00.39
# Mc/sec: 774.23
//
Query:       KOO24664.1  [L=468]
Description: hypothetical protein Ctob_001885 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.2e-07   31.5   0.6    3.9e-07   29.8   0.0    2.0  2  Cupin_4       Cupin superfamily protein
    8.3e-07   29.0   0.0    3.5e-06   26.9   0.0    1.9  2  Cupin_8       Cupin-like domain
  ------ inclusion threshold ------
      0.062   13.2   0.1       0.16   11.8   0.0    1.8  2  AraC_binding  AraC-like ligand binding domain


Domain annotation for each model (and alignments):
>> Cupin_4  Cupin superfamily protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.2      0.22   1.3e+03       2      13 ..      16      27 ..      15      29 .. 0.87
   2 !   29.8   0.0   6.6e-11   3.9e-07     114     210 ..     111     225 ..      93     255 .. 0.81

  Alignments for each domain:
  == domain 1  score: -1.5 bits;  conditional E-value: 0.22
                HHHHHHTTTTS- CS
     Cupin_4  2 eeFlreyWqkkp 13
                 +Flr++W+++p
  KOO24664.1 16 PAFLRDHWNQRP 27
                58********99 PP

  == domain 2  score: 29.8 bits;  conditional E-value: 6.6e-11
                 EEEEEEEE-TTBBSS-SEE-SSEEEEEEEEC-EEEEEE-...................SCCCTTSSSEE--TTCCG--S-SEEEEE-TT-EEEE-TT-E CS
     Cupin_4 114 vgsnvYatpggsqgvgpHyDdyDVfllQleGrkrWrvyk...................ptvpelelkseeplkildefepvedfvLepGDlLYlPrgvi 193
                   + +Y++  g +    H D +  f +Ql G k W+  +                   +  ++l++k + +    + f+  e f L +G lLYlP+g +
  KOO24664.1 111 IEVGLYISRTGGDVAEWHCDAVHNFTIQLRGSKEWQHLAatkpatadvtsrglfdrarNRAEQLAEKDSLARAVPQGFTGAERFDLIAGSLLYLPPGHW 209
                 46778999999888899*******************98889**************98756666666666666677888*9******************* PP

                 EEEEBBT-CCEEEEEEC CS
     Cupin_4 194 HqgvaedesltlSvglr 210
                 H+  +   + +lS+ +r
  KOO24664.1 210 HRVTPVV-GNSLSIDVR 225
                 **99887.444444444 PP

>> Cupin_8  Cupin-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.6   0.0       1.2   7.2e+03      17      32 ..       8      25 ..       8      35 .. 0.72
   2 !   26.9   0.0   5.8e-10   3.5e-06     132     241 ..     112     221 ..      66     227 .. 0.76

  Alignments for each domain:
  == domain 1  score: -3.6 bits;  conditional E-value: 1.2
     Cupin_8 17 ikgalkdwpalqk..wtd 32
                i++++ dwpa+ +  w++
  KOO24664.1  8 ITDLIPDWPAFLRdhWNQ 25
                789999***876544774 PP

  == domain 2  score: 26.9 bits;  conditional E-value: 5.8e-10
     Cupin_8 132 avnlWlGnsa.svsslHkDhyeNlycvvrGrKkftLfpPsdapflyeaslsptedgtvvssvdveepdlekfprlkda.....kkalevtlnaGevLyl 224
                 +v l++++ +  v   H D+++N+ +++rG K++  +  ++     ++s      +  + +   ++ +l ++ +l +a     + a +++l aG  Lyl
  KOO24664.1 112 EVGLYISRTGgDVAEWHCDAVHNFTIQLRGSKEWQHLAATKPATADVTS------RGLFDRARNRAEQLAEKDSLARAvpqgfTGAERFDLIAGSLLYL 204
                 5668999887689********************9877777666666665......23455555556666666666666666777899************ PP

     Cupin_8 225 PalWfHeVkslaeeplh 241
                 P + +H+V+   ++ l+
  KOO24664.1 205 PPGHWHRVTPVVGNSLS 221
                 ********987555555 PP

>> AraC_binding  AraC-like ligand binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   2.7e-05      0.16      40      70 ..     191     221 ..     188     295 .. 0.86
   2 ?   -2.9   0.0      0.98   5.9e+03      81     115 ..     361     395 ..     358     396 .. 0.77

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 2.7e-05
                   TEEEEE-TT-EEEE-TTS-EEEEE-TTSEEE CS
  AraC_binding  40 grtydlgpGdlfLlppgepHdyesdsedgwe 70 
                    +++dl +G+l+ lppg++H+  +  +++++
    KOO24664.1 191 AERFDLIAGSLLYLPPGHWHRVTPVVGNSLS 221
                   589*******************998877655 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 0.98
                   GGGGGG---EEETTEEE..E---TTTHHHHHHHHH CS
  AraC_binding  81 leriledssilagapllpalledeelaqllralfr 115
                   + r+l++s+ +a+  l++a++ d +l+ +l +l++
    KOO24664.1 361 VVRLLASSPLSAMDYLRFAVVCDAQLQPALARLIA 395
                   56778888888887777778999999999998875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (468 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       299  (0.0166769); expected 358.6 (0.02)
Passed bias filter:                      260  (0.0145016); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.49u 0.27s 00:00:00.76 Elapsed: 00:00:00.42
# Mc/sec: 3324.04
//
Query:       KOO24665.1  [L=715]
Description: ubiquitin-protein ligase e3a isoform 2 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.8e-88  296.4   0.0    3.7e-88  295.9   0.0    1.2  1  HECT      HECT-domain (ubiquitin-transferase)
    1.8e-13   50.5   1.6    4.4e-13   49.2   1.6    1.7  1  AZUL      Amino-terminal Zinc-binding domain of ubiquitin lig


Domain annotation for each model (and alignments):
>> HECT  HECT-domain (ubiquitin-transferase)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  295.9   0.0   4.2e-92   3.7e-88       2     306 ..     418     714 ..     417     715 .] 0.96

  Alignments for each domain:
  == domain 1  score: 295.9 bits;  conditional E-value: 4.2e-92
                 HHHHHHT-GGGSSEEESSTTSSSEEE-TTHHHHS....HHHHHHHHHHHHHTT--BSS-B-HHHHHHHTT-.---TCHHHHH-HHHHHHHHHHH..HS- CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        HECT   2 llskelldpklglfeeesedsgtlypkpssseeellklfeflGkvlGkaiyeeilldlpfsraflkfllgeekitledleeidpelakslkellslesn 100
                 l+ ++++d ++g+f + +++s+ +++++ s e+e  + fe++G++lG aiy++++ld +f+++++k+l+g +++ l+dl+   p la+s+++ll+++s+
  KOO24665.1 418 LIFAKIFDVSYGMFVY-DDESRFFWFNRASLENE--REFELIGMILGAAIYNGVVLDARFPHIVYKKLMG-QPVGLDDLAIAFPLLARSFQQLLDMQSD 512
                 78899*********75.88999*****9975554..48********************************.7************************887 PP

                 GGG...GT-BSEEEEE.TTEEEEEESSTTGGGSB--TTTHHHHHHHHHHHHHTGGGHHHHHHHHHHHHTTS-HHHHTTS-HHHHHHHHBCSSS.--HHH CS
                 xxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        HECT 101 teevedlaLtFtipen.agasatieLipnGanipVtnenkkeYiklyvnyllkksvekqleaflkGfsevipskalklfdaeelellisGedelidved 198
                 + ++++l+L  +++++ +g+++t++L+ nG n+ Vt +n++eY++lyv+yll++s+++q+ +f++Gf+ v+  + l+lf++eelelli+G+  ++d+e 
  KOO24665.1 513 D-DIDSLGLVMQVSFEqWGEQKTFDLVLNGGNVAVTLANRDEYVRLYVQYLLDDSIARQFGSFQRGFHLVCGGECLQLFRWEELELLICGSP-VLDFEA 609
                 7.6*********999999**************************************************************************.7***** PP

                 HHHTEEEETT--TTSHHHHHHHHHHHHS-HHHHHHHHHHHHSSSS--TTCGGG-B--EEEEE-S..-TTS--EEEGGGTEEEE---SSHHHHHHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        HECT 199 lrrnteykggynaesetiewlweilkefspeekrlfLqFvTgssrlPlgGfaelhpkftierkskedetrLPtahTCfnlLklpdYsskeilkekLltA 297
                 ++r+++y++g+++e++t++++we+++ +s e+k++fL F+Tgs+r+P++G+ +l  +f+i+r++ +de+rLP+ahTCfn+L lp+Y+ske+lk++Ll A
  KOO24665.1 610 FERVAQYDDGFSREHPTVRLMWEVIHALSFEMKKRFLFFCTGSDRVPIKGLGNL--NFVISRNG-TDEERLPSAHTCFNHLLLPEYKSKEKLKDQLLKA 705
                 ******************************************************..******88.********************************** PP

                 HHHHH--XX CS
                 xxxxxxxxx RF
        HECT 298 ieetegFel 306
                 i  tegF++
  KOO24665.1 706 IVDTEGFHI 714
                 *******96 PP

>> AZUL  Amino-terminal Zinc-binding domain of ubiquitin ligase E3A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.2   1.6     5e-17   4.4e-13       3      59 .]       9      63 ..       8      63 .. 0.94

  Alignments for each domain:
  == domain 1  score: 49.2 bits;  conditional E-value: 5e-17
        AZUL  3 klveqYfyQLthGCgsknCtnptCassrkapvrrltpnsAaalAleLakqdeeagLC 59
                 lv++Yf QLt+GCg+k C n +C+s+ + p  +l+ ++Aa  +leLa+     +LC
  KOO24665.1  9 NLVRRYFMQLTQGCGRKGCPNRYCFSCADGP-GQLDRTAAALRSLELAQGA-VHHLC 63
                59*****************************.89**************996.78888 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (715 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       355  (0.0198003); expected 358.6 (0.02)
Passed bias filter:                      320  (0.0178482); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.55u 0.26s 00:00:00.81 Elapsed: 00:00:00.40
# Mc/sec: 5301.80
//
Query:       KOO24666.1  [L=326]
Description: nicotinate-nucleotide pyrophosphorylase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.2e-52  178.1   0.0    1.9e-52  177.5   0.0    1.3  1  QRPTase_C  Quinolinate phosphoribosyl transferase, C-terminal
      6e-17   61.5   0.0    1.4e-16   60.3   0.0    1.7  1  QRPTase_N  Quinolinate phosphoribosyl transferase, N-terminal


Domain annotation for each model (and alignments):
>> QRPTase_C  Quinolinate phosphoribosyl transferase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  177.5   0.0   2.1e-56   1.9e-52       1     169 []     117     287 ..     117     287 .. 0.98

  Alignments for each domain:
  == domain 1  score: 177.5 bits;  conditional E-value: 2.1e-56
                 HHHHHHHHHHHHHCT..SSEEEE-S---TTTHHHHHHHHHHTTSB--TSSTTTSEEE-HHHHHHHSSHHHHHHHHHHHHTTTSEEEEEESSHHHHHHHH CS
   QRPTase_C   1 iAtltarmveaaksa..kvrildTRkttPglrllekyAvliGGgdnhrlgLsdmvlikdnhiaaagsiveavksvreavdkevkievevesleeleevl 97 
                 +A+++++++  a+++  + ++++TRkttPg+ ++eky +l+GG+d+hr++Ls+mv++kdnhi+ +gsi+  v ++r+a+++  kieve+ s++++ e+ 
  KOO24666.1 117 VASAAHAAMGIAREHgwHGKVAGTRKTTPGFGIVEKYGLLVGGADTHRMDLSNMVMLKDNHIWSTGSITASVAKARAACGFSTKIEVECTSEQDACEAC 215
                 799999999999999999********************************************************************************* PP

                 HHT-SEEEEES--HHHHHHHHHHHHHHSTTSEEEEESS--TTTHHHHHCTT-SEEEECHHCHTB----EEEE CS
   QRPTase_C  98 eaeadiimLDnfsveelkkaveelkeknkrvlievSGgvtlenveeyaksgvdvisvgalthsvkalDislk 169
                  a+ diimLDn  + elk+++ ++k+++++v+ie+SGg+t  ++ ++ +++vd+is galt++  ++D+slk
  KOO24666.1 216 TAGCDIIMLDNYAPAELKQVAARVKQRWPHVIIEASGGITSATMPAFFSEHVDIISQGALTQGYGVVDFSLK 287
                 **********************************************************************97 PP

>> QRPTase_N  Quinolinate phosphoribosyl transferase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.3   0.0   1.6e-20   1.4e-16      11      89 .]      33     115 ..      25     115 .. 0.86

  Alignments for each domain:
  == domain 1  score: 60.3 bits;  conditional E-value: 1.6e-20
                 HGCTTSEEEEEEEESSSEEE-SHHHHHHHHHHHTTTEEEESS-TT-EEE.....TTEEEEEEEEEHHHHHHHHHHHHHHHHHHH CS
   QRPTase_N  11 lipeekkakaeiiakeegvvaGlevaeevfellpglevellvkDGerve.....kgdvlleieGnarallsaERvaLnllqrlS 89 
                 ++ +++   a ++ k+egv+aG+++a+ vfe++ gl+ve+l+++G +++     +++ +++++G++r+ll aER+aLn l r+S
  KOO24666.1  33 FVVGDAPHYAMLLGKSEGVLAGVPFANFVFEYV-GLTVEWLKPEGHYITaeeaaAKTPVAKVSGPTRKLLVAERTALNTLARCS 115
                 6677888889999********************.***********8776111115789************************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (326 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       658  (0.0367003); expected 358.6 (0.02)
Passed bias filter:                      494  (0.0275531); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.45u 0.22s 00:00:00.67 Elapsed: 00:00:00.38
# Mc/sec: 2559.22
//
Query:       KOO24667.1  [L=191]
Description: hypothetical protein Ctob_001889 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (191 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       346  (0.0192983); expected 358.6 (0.02)
Passed bias filter:                      305  (0.0170115); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.41u 0.25s 00:00:00.65 Elapsed: 00:00:00.42
# Mc/sec: 1377.49
//
Query:       KOO24668.1  [L=405]
Description: hypothetical protein Ctob_001888 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.4e-17   62.1   0.0    4.4e-12   46.0   0.0    2.3  2  DUF3110          Protein of unknown function (DUF3110)
    0.00065   20.2   0.4      0.002   18.7   0.4    1.7  1  Metallophos      Calcineurin-like phosphoesterase
  ------ inclusion threshold ------
        0.2   11.8   1.1       0.57   10.3   0.0    2.2  2  Antimicrobial_6  Diapausin family of antimicrobial peptide


Domain annotation for each model (and alignments):
>> DUF3110  Protein of unknown function (DUF3110)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.0   0.0   7.3e-16   4.4e-12       2      48 ..     216     265 ..     215     270 .. 0.91
   2 !   13.8   0.0   8.2e-06     0.049      51      83 ..     306     338 ..     293     339 .. 0.87

  Alignments for each domain:
  == domain 1  score: 46.0 bits;  conditional E-value: 7.3e-16
     DUF3110   2 yvLlFnagteneGihtle...lkdrnvvlaFeseddAtryallLeaqdfp 48 
                 yvL+Fnag+++eG++tl+   ++ r  vlaFe  ddA+r+a+lL a++f 
  KOO24668.1 216 YVLIFNAGRQDEGVYTLQarvSQARANVLAFELDDDAKRFAQLLCADGFV 265
                 9*****************77556699********************9996 PP

  == domain 2  score: 13.8 bits;  conditional E-value: 8.2e-06
     DUF3110  51 tveaidaeeieefcesagyelelveegellvPP 83 
                 t  a +a  + +fc++  +e+ lv++g+l++PP
  KOO24668.1 306 TSTAWEAGTLDKFCTTGSFEISLVPKGTLIMPP 338
                 555678889***********************9 PP

>> Metallophos  Calcineurin-like phosphoesterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.7   0.4   3.3e-07     0.002      30     107 ..      10      80 ..       1     112 [. 0.71

  Alignments for each domain:
  == domain 1  score: 18.7 bits;  conditional E-value: 3.3e-07
                  HHTTESEEEEESTSSSSS.HHHHHHHHHHHHHHHHTSEEEEEC-TTSCHHHHHHHHHHHHHHHHHHHEHHHCEEETSEE CS
  Metallophos  30 reekpdlvllaGDlvdrg.dlekellellaalvkypipvylllGNHegfeeellnkygylgifsepwrsdaevfnnlpl 107
                  ++ ++d+++laGD+     +l + l  l+  + +    v++++GNH+     +ln+++ +  f+++ + +++ + +  +
   KOO24668.1  10 ERFGNDVLILAGDVSANDeVLRTTLSSLVGSFAM----VFFTPGNHD----LWLNPEKRFLFFPNLAKACGSDMLFARI 80 
                  34589********777767888878888888888....9********....6666666666666777766665555554 PP

>> Antimicrobial_6  Diapausin family of antimicrobial peptide
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.7      0.59   3.5e+03      14      21 ..     294     301 ..     289     303 .. 0.71
   2 ?   10.3   0.0   9.5e-05      0.57      10      38 ..     363     391 ..     362     392 .. 0.81

  Alignments for each domain:
  == domain 1  score: -1.8 bits;  conditional E-value: 0.59
  Antimicrobial_6  14 ERneCCrA 21 
                        n CCr 
       KOO24668.1 294 AWNICCRS 301
                      55779985 PP

  == domain 2  score: 10.3 bits;  conditional E-value: 9.5e-05
  Antimicrobial_6  10 RsveERneCCrAHGyqGmiRGaCtggrAf 38 
                      R v+ERn+   AHGy     G  ++ + f
       KOO24668.1 363 RGVQERNDLAGAHGYAPSEEGRSIDTSSF 391
                      89*************87777776666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (405 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       346  (0.0192983); expected 358.6 (0.02)
Passed bias filter:                      285  (0.015896); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.43u 0.26s 00:00:00.69 Elapsed: 00:00:00.39
# Mc/sec: 3093.51
//
Query:       KOO24669.1  [L=359]
Description: hypothetical protein Ctob_001891 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (359 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       288  (0.0160634); expected 358.6 (0.02)
Passed bias filter:                      215  (0.0119917); expected 358.6 (0.02)
Passed Vit filter:                        11  (0.000613531); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.41u 0.21s 00:00:00.62 Elapsed: 00:00:00.36
# Mc/sec: 3019.99
//
Query:       KOO24670.1  [L=306]
Description: hypothetical protein Ctob_007513 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.12   12.7   0.2       0.33   11.3   0.0    1.8  2  ParBc     ParB-like nuclease domain


Domain annotation for each model (and alignments):
>> ParBc  ParB-like nuclease domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.1      0.24   4.3e+03      48      63 ..     140     155 ..     134     167 .. 0.77
   2 ?   11.3   0.0   1.8e-05      0.33      33      64 ..     205     238 ..     179     257 .. 0.79

  Alignments for each domain:
  == domain 1  score: -1.9 bits;  conditional E-value: 0.24
       ParBc  48 ryeiiaGerRlrAakr 63 
                 +  +i+ +rRl  +++
  KOO24670.1 140 LLAVIGACRRLGITHI 155
                 6778999999977766 PP

  == domain 2  score: 11.3 bits;  conditional E-value: 1.8e-05
       ParBc  33 kGllqPiivrktr..qgryeiiaGerRlrAakrl 64 
                   +l P +vrk    + +  i++Ge R++A+   
  KOO24670.1 205 GSVLVPELVRKAShtERLAVIFDGEKRHKAYRTY 238
                 6788999*****999999************9865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (306 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       484  (0.0269954); expected 358.6 (0.02)
Passed bias filter:                      364  (0.0203023); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.23s 00:00:00.64 Elapsed: 00:00:00.36
# Mc/sec: 2531.28
//
Query:       KOO24671.1  [L=368]
Description: methylenetetrahydrofolate dehydrogenase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.7e-23   83.1   0.0    3.3e-23   82.1   0.0    1.5  1  THF_DHG_CYH    Tetrahydrofolate dehydrogenase/cyclohydrolase,
    3.3e-15   55.8   2.1    2.2e-12   46.6   2.1    3.0  1  THF_DHG_CYH_C  Tetrahydrofolate dehydrogenase/cyclohydrolase,
  ------ inclusion threshold ------
       0.19   11.6   0.0       0.33   10.8   0.0    1.3  1  CdiI_N         CdiI N-terminal domain


Domain annotation for each model (and alignments):
>> THF_DHG_CYH  Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   82.1   0.0   5.6e-27   3.3e-23       6     116 .]      13     120 ..      10     120 .. 0.93

  Alignments for each domain:
  == domain 1  score: 82.1 bits;  conditional E-value: 5.6e-27
                  HHHHHHHHHHHHHHHHHHHH.T---EEEEEEES--HHHHHHHHHHHHHHHHTT-EEEEEEE-TT--HHHHHHHHHHHHH-TT--EEEE-SS-STTS-H CS
  THF_DHG_CYH   6 alakeireelkeeveklkek.gvkpkLavilvgddpasevYvrnkkkaceevGieseliklpedvseeellklieelneddsvdGilvqlPlpkhide 102
                  a+a++++ e+++ v+kl +  + +pkL+++l ++dpa evY+r++++ace+ Gi +el++        el +++ ++ned++v+Gi+v++P+    ++
   KOO24671.1  13 AVAEAFNLEIRDTVAKLVSAgKGHPKLVGFLSNEDPAGEVYARMTSRACEKNGIAYELRRP----GRHELESAVIAANEDPDVHGIIVYYPVFGTQKD 106
                  79999***********99974459***********************************99....5688999********************77779* PP

                  HHHHCCS-GGGBTT CS
  THF_DHG_CYH 103 kaileaispeKDVD 116
                   ++ +++s eKDV+
   KOO24671.1 107 MYLRDVVSFEKDVE 120
                  *************8 PP

>> THF_DHG_CYH_C  Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.6   2.1   3.6e-16   2.2e-12      10     111 ..     154     284 ..     145     320 .. 0.72

  Alignments for each domain:
  == domain 1  score: 46.6 bits;  conditional E-value: 3.6e-16
                    TT--SS--HHHHHHHHHHHHCT--.........-TT-EEEEE---TTTHHHHHHHHHCT....................T-EEEEE-TTSCCHHHH CS
  THF_DHG_CYH_C  10 kgeeallpctpkgvvellketgie.........legkkvvvvGrsnivgkplallLlek....................natVtvchsktkdlaei 76 
                    + ++++lpctp ++v+ll++ g           l+g++++v +rs++vg+pla++L+++                      t++ +++ + + ++ 
     KOO24671.1 154 EPKKCVLPCTPLACVKLLEDLGAYdkaapvrkqLAGRTCIVFNRSEVVGRPLAAMLANDgatvysvdehgmqvftagavSGTIK-VEETSVEQKDA 248
                    4589**************9865422333344449************************73334444444444444432122222.23333567889 PP

                    HCCSSEEEE-SS-TT-.B-GGGS-TT-EEEE---EE CS
  THF_DHG_CYH_C  77 treadivvvavGkpel.ikaemvkegavviDvGinr 111
                    + +ad+v+++v ++++ i a+ +k+ga+ i+v  + 
     KOO24671.1 249 LASADVVISGVPVKSFtIAADAMKPGAIAINVSQHM 284
                    99**********9987699************98665 PP

>> CdiI_N  CdiI N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   5.6e-05      0.33      27      79 ..      77     128 ..      70     142 .. 0.81

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 5.6e-05
      CdiI_N  27 eaesCliasitdpeesnfifiWplyreaddvhvqnsilfleeleeefepqeiy 79 
                 e es +ia+  dp++ ++i+++p++ + +d+++++ + f +++e+ ++ +  y
  KOO24671.1  77 ELESAVIAANEDPDVHGIIVYYPVFGTQKDMYLRDVVSFEKDVEG-LNHRYRY 128
                 56899*******************************999999864.4544444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (368 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       522  (0.0291148); expected 358.6 (0.02)
Passed bias filter:                      341  (0.0190195); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.43u 0.23s 00:00:00.66 Elapsed: 00:00:00.37
# Mc/sec: 2974.22
//
Query:       KOO24672.1  [L=162]
Description: calcium-binding pollen allergen [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
      5e-15   54.1   0.2    4.6e-07   29.3   0.0    2.4  2  EF-hand_6     EF-hand domain
    1.7e-13   49.1   0.5    7.6e-06   25.1   0.0    2.3  2  EF-hand_1     EF hand
      2e-13   49.2   0.7    1.8e-06   27.2   0.0    2.4  2  EF-hand_5     EF hand
    8.1e-10   39.0   0.0     0.0017   18.7   0.0    2.2  2  EF-hand_7     EF-hand domain pair
    1.3e-08   34.6   0.3    0.00024   20.9   0.0    2.3  2  EF-hand_8     EF-hand domain pair
  ------ inclusion threshold ------
       0.12   12.8   0.0         10    6.5   0.0    2.2  2  SPARC_Ca_bdg  Secreted protein acidic and rich in cysteine Ca
       0.24   11.4   0.0       0.34   10.9   0.0    1.2  1  EF-hand_4     Cytoskeletal-regulatory complex EF hand


Domain annotation for each model (and alignments):
>> EF-hand_6  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.3   0.0   1.8e-10   4.6e-07       2      31 .]      14      42 ..      13      43 .. 0.93
   2 !   22.7   0.1   2.3e-08   5.8e-05       2      28 ..      51      77 ..      50      88 .. 0.88

  Alignments for each domain:
  == domain 1  score: 29.3 bits;  conditional E-value: 1.8e-10
   EF-hand_6  2 lreaFklfDkdgdGkidaeElrkalrkalg 31
                ++++F+ fD++gdG i+++E+ ++l+ +lg
  KOO24672.1 14 VMDVFRSFDRNGDGRISRSECAQVLS-MLG 42
                679***********************.776 PP

  == domain 2  score: 22.7 bits;  conditional E-value: 2.3e-08
   EF-hand_6  2 lreaFklfDkdgdGkidaeElrkalrk 28
                ++  F+++D d++G++d++El ++lr+
  KOO24672.1 51 MEGMFDALDADRSGTLDFHELDRLLRR 77
                5668*********************95 PP

>> EF-hand_1  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.1   0.0     3e-09   7.6e-06       2      28 ..      14      40 ..      13      41 .. 0.91
   2 !   22.3   0.2   2.4e-08   6.1e-05       1      28 [.      50      77 ..      50      78 .. 0.91

  Alignments for each domain:
  == domain 1  score: 25.1 bits;  conditional E-value: 3e-09
                HHHHHHHHTTTSSSEEEHHHHHHHHHH CS
   EF-hand_1  2 lkeiFrefDkDgdGkIdfeEfkellkk 28
                + ++Fr fD++gdG+I+++E  ++l++
  KOO24672.1 14 VMDVFRSFDRNGDGRISRSECAQVLSM 40
                6789*****************999986 PP

  == domain 2  score: 22.3 bits;  conditional E-value: 2.4e-08
                HHHHHHHHHTTTSSSEEEHHHHHHHHHH CS
   EF-hand_1  1 elkeiFrefDkDgdGkIdfeEfkellkk 28
                e++ +F+ +D D++G++df E+ +ll++
  KOO24672.1 50 EMEGMFDALDADRSGTLDFHELDRLLRR 77
                5678******************999986 PP

>> EF-hand_5  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.2   0.0   7.1e-10   1.8e-06       3      20 ..      16      33 ..      14      38 .. 0.90
   2 !   20.2   0.2   1.1e-07   0.00028       4      24 ..      54      74 ..      51      75 .. 0.90

  Alignments for each domain:
  == domain 1  score: 27.2 bits;  conditional E-value: 7.1e-10
                HHHHHH-SS-SSCE-HHH CS
   EF-hand_5  3 dtFqaiDlNgDGkIskeE 20
                d+F+ +D NgDG+Is++E
  KOO24672.1 16 DVFRSFDRNGDGRISRSE 33
                89***************9 PP

  == domain 2  score: 20.2 bits;  conditional E-value: 1.1e-07
                HHHHH-SS-SSCE-HHHHHHH CS
   EF-hand_5  4 tFqaiDlNgDGkIskeELktl 24
                +F+a+D++++G++++ EL +l
  KOO24672.1 54 MFDALDADRSGTLDFHELDRL 74
                7*****************987 PP

>> EF-hand_7  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.7   0.0   6.7e-07    0.0017       3      28 ..      13      38 ..      11      44 .. 0.73
   2 !   18.4   0.0   8.4e-07    0.0022       4      30 ..      51      77 ..      48     123 .. 0.87

  Alignments for each domain:
  == domain 1  score: 18.7 bits;  conditional E-value: 6.7e-07
   EF-hand_7  3 klkeaFkelDtdgdgyldkeellrll 28
                +++++F+++D++gdg+++++e  ++l
  KOO24672.1 13 RVMDVFRSFDRNGDGRISRSECAQVL 38
                56788888888888888888855555 PP

  == domain 2  score: 18.4 bits;  conditional E-value: 8.4e-07
   EF-hand_7  4 lkeaFkelDtdgdgyldkeellrllrk 30
                ++ +F++lD d++g ld  el rllr+
  KOO24672.1 51 MEGMFDALDADRSGTLDFHELDRLLRR 77
                5679*********************97 PP

>> EF-hand_8  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.0   0.0   5.6e-05      0.14      31      47 ..      17      33 ..      14      39 .. 0.87
   2 !   20.9   0.0   9.6e-08   0.00024      14      48 ..      38      71 ..      36      77 .. 0.90

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 5.6e-05
   EF-hand_8 31 lfrefDtdgdGkisfeE 47
                +fr fD++gdG+is  E
  KOO24672.1 17 VFRSFDRNGDGRISRSE 33
                79************988 PP

  == domain 2  score: 20.9 bits;  conditional E-value: 9.6e-08
   EF-hand_8 14 lrilglkkglseeevdilfrefDtdgdGkisfeEF 48
                l++lgl++ +++ e++ +f+++D d++G+++f E 
  KOO24672.1 38 LSMLGLPQ-YGAAEMEGMFDALDADRSGTLDFHEL 71
                47899996.***********************985 PP

>> SPARC_Ca_bdg  Secreted protein acidic and rich in cysteine Ca binding region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.3   0.0     0.019        49      79     110 ..       3      34 ..       1      41 [. 0.66
   2 ?    6.5   0.0    0.0041        10      57      79 ..      52      74 ..      43      79 .. 0.87

  Alignments for each domain:
  == domain 1  score: 4.3 bits;  conditional E-value: 0.019
  SPARC_Ca_bdg  79 lraplvklehCikpflescDadkdkkislkEw 110
                   +ra+l ++   +   ++s D + d++is++E 
    KOO24672.1   3 IRAQLLQNLPRVMDVFRSFDRNGDGRISRSEC 34 
                   55666666666666777777777777777764 PP

  == domain 2  score: 6.5 bits;  conditional E-value: 0.0041
  SPARC_Ca_bdg 57 awkFsklDtnsdkvlsksELapl 79
                  + +F+ lD ++ ++l+ +EL+ l
    KOO24672.1 52 EGMFDALDADRSGTLDFHELDRL 74
                  569*****************987 PP

>> EF-hand_4  Cytoskeletal-regulatory complex EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   0.00013      0.34      12      65 ..      14      71 ..       7      86 .. 0.80

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00013
   EF-hand_4 12 yweifsglk.pednkltgdkvapvlknsklee...dklekiwdladidedgkldfeef 65
                  ++f++ + + d +++ ++ a+vl    l++    ++e ++d  d d  g+ldf+e+
  KOO24672.1 14 VMDVFRSFDrNGDGRISRSECAQVLSMLGLPQygaAEMEGMFDALDADRSGTLDFHEL 71
                56788887526789999999999998887775332789999***************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (162 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       404  (0.0225333); expected 358.6 (0.02)
Passed bias filter:                      303  (0.0169); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.40u 0.26s 00:00:00.66 Elapsed: 00:00:01.11
# Mc/sec: 442.34
//
Query:       KOO24673.1  [L=751]
Description: DNA replication licensing factor mcm9 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.7e-74  249.7   0.1    2.6e-74  249.1   0.1    1.2  1  MCM              MCM P-loop domain
    9.2e-26   90.2   1.0    1.8e-25   89.2   1.0    1.4  1  MCM_OB           MCM OB domain
    5.8e-18   65.1   2.5    1.4e-17   63.9   2.5    1.7  1  MCM_lid          MCM AAA-lid domain
    3.3e-08   33.2   0.2      3e-05   23.5   0.0    2.7  2  Mg_chelatase     Magnesium chelatase, subunit ChlI
    9.1e-08   32.2   0.0    1.9e-07   31.2   0.0    1.6  1  AAA_5            AAA domain (dynein-related subfamily)
    3.7e-05   23.5   0.1     0.0019   18.0   0.1    2.5  1  Sigma54_activat  Sigma-54 interaction domain
    0.00082   19.2   0.0      0.002   18.0   0.0    1.6  1  AAA_3            ATPase family associated with various cellul
  ------ inclusion threshold ------
      0.012   15.9   0.1      0.043   14.1   0.1    1.9  1  C1_4             TFIIH C1-like domain
      0.018   14.8   1.0      0.066   12.9   1.0    1.9  1  AAA_30           AAA domain
      0.056   13.7   0.5       0.35   11.1   0.1    2.4  2  AAA_22           AAA domain
      0.058   13.8   0.5      0.058   13.8   0.5    2.9  2  AAA_16           AAA ATPase domain
      0.065   13.8   0.1          1    9.9   0.0    2.5  2  AAA_18           AAA domain
      0.077   13.4   0.1       0.23   11.9   0.1    1.8  1  AAA              ATPase family associated with various cellul
      0.078   12.9   0.1       0.23   11.4   0.1    1.7  1  VWA_3            von Willebrand factor type A domain
       0.18   11.3   0.1        0.4   10.2   0.1    1.5  1  AAA_7            P-loop containing dynein motor region


Domain annotation for each model (and alignments):
>> MCM  MCM P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  249.1   0.1   2.2e-77   2.6e-74      16     222 ..     324     529 ..     315     531 .. 0.97

  Alignments for each domain:
  == domain 1  score: 249.1 bits;  conditional E-value: 2.2e-77
                 HHHHHHSSTTSSS-HHHHHHHHHHHH---EBBBSSSSBBCSS-EEEEEESSTSTHHHHHHHHHHHSSSEEEEESSSSSSSHSSSEEEEESSSSSEEEEE CS
         MCM  16 eklvksiapsiyghedvkkaillqlfggvkkkledktklrgdinvllvgdpgtaKsqlLkyveklapravytsgkgssaagLtaavvrdeetgefvlea 114
                 + l+++++ps+ g+  vk a ll+l+ggv +++++++++rg+ ++llvgd g++Ksq+L+y++kl+pr+v t+g gs+aagLt++ v+d+ +ge++lea
  KOO24673.1 324 DWLLHQMCPSLSGMYLVKLATLLTLIGGVGHTDSSGMRVRGESHMLLVGDAGVGKSQVLRYAAKLSPRSVLTTGIGSTAAGLTCTAVKDT-SGEWMLEA 421
                 568999*********************************************************************************997.789***** PP

                 THHHHTTTSEEEEESGGGSTCHHHHHHHHHHHHSEEEEESSSCEEEEE--EEEEEEE--SSSSCCTTS-HHHHSSSSHHHHHHSSEEEEE-SSTTHHHH CS
         MCM 115 GalvladkGvcciDefdkmkeedrsalhEamEqqtisiaKaGivatLnartsvlaAanpkagrydkkksvaeninlsaalLsrFDlifvllDkvdeekD 213
                 Galvlad+G+cc+Defd +k+++r+a++EamEqqtis+aKaG+v++L+++++v+aA+npk g+ dk+  ++++  ls++l+srFD++++l D +d+++D
  KOO24673.1 422 GALVLADGGLCCVDEFDSIKNDERTAVLEAMEQQTISVAKAGMVCKLRTKCTVIAATNPKSGKMDKHVALHSQTGLSTPLISRFDIVLLLSDAHDDDRD 520
                 *************************************************************************************************** PP

                 HHHHHHHHH CS
         MCM 214 eelaehivs 222
                 ++++ hi+ 
  KOO24673.1 521 KRISAHILA 529
                 *******86 PP

>> MCM_OB  MCM OB domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   89.2   1.0   1.5e-28   1.8e-25       4     123 ..     134     265 ..     131     267 .. 0.91

  Alignments for each domain:
  == domain 1  score: 89.2 bits;  conditional E-value: 1.5e-28
                 G--GGGTTSEEEEEEEEEEE---EEEEEEEEEEETTT-.-EEE..S---......-SB-.......TTT-HHH-EEE-GGGSEEEEEEEEEEE------ CS
      MCM_OB   4 dlrsehigklvkveGivtrasevkpklkkavfeckkcgktvev..elee......PrkCe.....ekeCeskdpfkletekskfvdfqklklQEspeev 89 
                 ++r+++i++l +v+G+v+r+  vk   ++  ++c+kc++   v  +le+      P +C+      + C    +f+ ++   +++d+q++++QE+  ++
  KOO24673.1 134 SIRAADINRLLSVSGTVIRTGVVKMVHQRREYMCTKCKHRFAVecDLEQrnsmplPLECPsdglaARPCA-GFKFEPVPGTEVCRDYQEVRIQEQVHRL 231
                 799************************************888744344477888899**98888877898.679999999******************* PP

                 -------EEEEEEEGGGTT---TT-EEEEEEEEE CS
      MCM_OB  90 paGelPrslevileddlvdkvkPGdrvevtGiyr 123
                  +G +Prs+++il+ddlvd++kPGd v+v+G++r
  KOO24673.1 232 TVGAIPRSITLILQDDLVDRCKPGDDVTVVGVLR 265
                 ********************************98 PP

>> MCM_lid  MCM AAA-lid domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.9   2.5   1.2e-20   1.4e-17       2      84 ..     562     641 ..     561     644 .. 0.95

  Alignments for each domain:
  == domain 1  score: 63.9 bits;  conditional E-value: 1.2e-20
                 HHHHHHHHHHHTT--BETCHHHHHHHHHHHHHHHHHTSSTSSSST--HHHHHHHHHHHHHHHHHHTSSSE-HHHHHHHHHHHH CS
     MCM_lid   2 llrkYiayarekikPklseeakeklseaYvelRkeeedskrksipitvRqLesliRLseAlAklrlsevvteedveeairllk 84 
                 +lrkYi+y +++  P+lse a+  l+ +Y ++R ++   +r++ + t R+Le+l+RL++A+A+l ++++v+  d+ +ai l++
  KOO24673.1 562 KLRKYIEYVKATRLPTLSEPAQRVLQAYYSRMRATA---DRDASRSTIRMLEALVRLAQAHARLMFQHEVSLVDACHAILLME 641
                 79********************************77...37899***********************************9997 PP

>> Mg_chelatase  Magnesium chelatase, subunit ChlI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.8   0.0    0.0034         4      19      48 ..     362     391 ..     354     403 .. 0.85
   2 !   23.5   0.0   2.5e-08     3e-05      93     199 ..     415     511 ..     401     518 .. 0.84

  Alignments for each domain:
  == domain 1  score: 6.8 bits;  conditional E-value: 0.0034
  Mg_chelatase  19 aaGgHnlllvGppGsGKtmlakrlpsllpp 48 
                   + G+ ++llvG +G GK+ + +  ++l p+
    KOO24673.1 362 VRGESHMLLVGDAGVGKSQVLRYAAKLSPR 391
                   56999*************998877777665 PP

  == domain 2  score: 23.5 bits;  conditional E-value: 2.5e-08
  Mg_chelatase  93 ggskpkpGeislahnGvLfLDElpefkrkvlevLRePledgevtisrakakvefparfqlvaamNpcpcgklkdkekectcsekeierYlsklsgpl 189
                   g    + G++ la  G+  +DE+  +k++   ++ e +e++++++++a   ++  ++++++aa+Np  +gk+++   +++       + ++ ls pl
    KOO24673.1 415 GEWMLEAGALVLADGGLCCVDEFDSIKNDERTAVLEAMEQQTISVAKAGMVCKLRTKCTVIAATNPK-SGKMDK---HVA------LHSQTGLSTPL 501
                   5557889***********************************************************5.566552...222......23356799999 PP

  Mg_chelatase 190 ldRidlqvev 199
                   + R+d+ + +
    KOO24673.1 502 ISRFDIVLLL 511
                   9999998765 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.2   0.0   1.6e-10   1.9e-07       1     138 []     367     505 ..     367     505 .. 0.85

  Alignments for each domain:
  == domain 1  score: 31.2 bits;  conditional E-value: 1.6e-10
                 EEEEE--SSSSHHHHHHHGGGGBS--EEEEE--TT--HHHHH--B--..........--------G-SEEEEESGGG--HHHHHHHHHHHHSSEEE..- CS
       AAA_5   1 dvlLvGppGtgKselaerlaaalnreveyvqltrdtteedlkgrreik.ngttslvdsplvraaregeilvlDEveraesevlnsLlslleerrlllee 98 
                 ++lLvG+ G+gKs++ ++ a++  r+v++  + +  t++ l+     + +g+  l+ ++lv     g ++++DE++ ++ +   ++l  +e++++++++
  KOO24673.1 367 HMLLVGDAGVGKSQVLRYAAKLSPRSVLTTGIGS--TAAGLTCTAVKDtSGEWMLEAGALV--LADGGLCCVDEFDSIKNDERTAVLEAMEQQTISVAK 461
                 78***************************99987..7777777666446888889999999..89**************99999999************ PP

                 SSSEEE---......-EEEEEESS--..........-TT-TTHHHHTT- CS
       AAA_5  99 ggelvkaknddllerfrviatanpld.........rslnelspalrsRf 138
                  g ++k + +      +via++np +         +s+  ls +l+sRf
  KOO24673.1 462 AGMVCKLRTK-----CTVIAATNPKSgkmdkhvalHSQTGLSTPLISRF 505
                 *****99997.....9********9976666555555566666666665 PP

>> Sigma54_activat  Sigma-54 interaction domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.0   0.1   1.6e-06    0.0019      21     147 ..     364     484 ..     355     494 .. 0.79

  Alignments for each domain:
  == domain 1  score: 18.0 bits;  conditional E-value: 1.6e-06
                      SSS-EEEECSTTSSHHHHHHHHHHHSTTTTS-EEEEETTTS-TTCHHHHHHEBSSSSSTTTSS-BEHHHHHTTTSEEEEETGGGS-HHHHHHHH CS
  Sigma54_activat  21 tdlsvlitGesGtGKellaraiheaskrkekpfvavncaaipeelleseLFGhekGaFtGAekekkGlfekadgGtlfLDeigelplelQekLl 114
                       ++++l++G+ G+GK+ + r   + s+r+   +++  ++++++ l  + +        +G    ++G++  adgG   +De  +++ +  + +l
       KOO24673.1 364 GESHMLLVGDAGVGKSQVLRYAAKLSPRS---VLTTGIGSTAAGLTCTAV-----KDTSGEWMLEAGALVLADGGLCCVDEFDSIKNDERTAVL 449
                      56789999999999999988888888854...567777777777665533.....22245666788**************************** PP

                      HHHHHSEE..ESBTSSSEEE--EEEEEEESS-HHH CS
  Sigma54_activat 115 rvlqegev..ervGsskeikvdvriiaatnedlee 147
                      ++++++++   + G   + ++++ +iaatn +  +
       KOO24673.1 450 EAMEQQTIsvAKAGMVCKLRTKCTVIAATNPKSGK 484
                      ****99762269999**************977655 PP

>> AAA_3  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.0   0.0   1.6e-06     0.002       1     113 [.     367     481 ..     367     487 .. 0.73

  Alignments for each domain:
  == domain 1  score: 18.0 bits;  conditional E-value: 1.6e-06
       AAA_3   1 hvllegvPGlaktllvkalakaldlefkriqftpdllPsdilGtevfeekekefefkkGpvf.an..llladeinrappktqsalleameerqvtveg. 95 
                 h+ll g  G++k ++ +  ak    ++    +      + ++ t v ++++ e+ +++G+++ a+  l  +de +  +   ++a+leame+++++v++ 
  KOO24673.1 367 HMLLVGDAGVGKSQVLRYAAKLSPRSVLTTGIG--STAAGLTCTAV-KDTSGEWMLEAGALVlADggLCCVDEFDSIKNDERTAVLEAMEQQTISVAKa 462
                 888888888888888887776654443322222..23445555554.556788999999865243448999*********************9998761 PP

       AAA_3  96 .ethklpepflvlatqnPi 113
                     kl ++ +v+a+ nP 
  KOO24673.1 463 gMVCKLRTKCTVIAATNPK 481
                 15679************95 PP

>> C1_4  TFIIH C1-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   0.1   3.6e-05     0.043      22      41 ..     161     180 ..     147     186 .. 0.83

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 3.6e-05
        C1_4  22 tssryrCekCkndFCiDCDv 41 
                 +   y C kCk+ F ++CD+
  KOO24673.1 161 QRREYMCTKCKHRFAVECDL 180
                 4567***************7 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   1.0   5.5e-05     0.066      18     122 ..     365     462 ..     359     465 .. 0.74

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 5.5e-05
      AAA_30  18 drvavltGpAGtGKttalkalreaweaaggrviglAptgkaAkvLaeelgieastiakllkrlkgrarlepgtllivDEagmvdtkqlaallkaaekag 116
                 +  ++l+G AG GK+ +l+ ++++  ++    ++ +  g  A+ L+  + +  +t  +++ +  g+  l++g l  vDE   + +++ +a+l+a+e++ 
  KOO24673.1 365 ESHMLLVGDAGVGKSQVLRYAAKLSPRS----VLTTGIGSTAAGLT--CTAVKDTSGEWMLEA-GALVLADGGLCCVDEFDSIKNDERTAVLEAMEQQT 456
                 45689**************999998855....44555555566666..333345555555333.44678889************************998 PP

      AAA_30 117 akvilv 122
                 ++v  +
  KOO24673.1 457 ISVAKA 462
                 888755 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.1    0.0003      0.35       4      29 ..     364     389 ..     360     420 .. 0.82
   2 ?   -0.6   0.0       1.2   1.5e+03      44     101 ..     569     635 ..     549     648 .. 0.70

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.0003
      AAA_22   4 tagilvvtGesGtGKTtllrrlleql 29 
                 ++++++++G +G+GK+ +lr  ++  
  KOO24673.1 364 GESHMLLVGDAGVGKSQVLRYAAKLS 389
                 789****************9887765 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 1.2
      AAA_22  44 fvtlpsstsskdllrellralglelka.....erlsseellealeqalrarav....ielliiDEaq 101
                 +v+++ + ++++ ++++l+a+ ++  a     +  s+ ++leal + ++a+a+    +e+ ++D  +
  KOO24673.1 569 YVKATRLPTLSEPAQRVLQAYYSRMRAtadrdASRSTIRMLEALVRLAQAHARlmfqHEVSLVDACH 635
                 6666666666666666666666666666666666788888888888888888877776666666555 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.5   4.8e-05     0.058      22      51 ..     364     392 ..     346     416 .. 0.81
   2 ?    0.7   1.2       0.5   5.9e+02      81     131 ..     566     616 ..     445     644 .. 0.56

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 4.8e-05
      AAA_16  22 grpelvllsGesGvGKsslvrellralekd 51 
                 g+ + +ll+G++GvGKs ++r +++   ++
  KOO24673.1 364 GE-SHMLLVGDAGVGKSQVLRYAAKLSPRS 392
                 33.899***************999644443 PP

  == domain 2  score: 0.7 bits;  conditional E-value: 0.5
      AAA_16  81 llrqlldeaesaeleawrekleealaavpelagaeasrllellkrllalls 131
                 +++ +++    ++ e++++ l++ ++  ++ a+ +asr    + ++l++l+
  KOO24673.1 566 YIEYVKATRLPTLSEPAQRVLQAYYSRMRATADRDASRSTIRMLEALVRLA 616
                 222222222223334444444444444444444444555555555553333 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   0.0   0.00084         1       2      67 ..     369     455 ..     368     493 .. 0.72
   2 ?    0.7   0.0      0.58     7e+02      28      88 ..     582     640 ..     561     646 .. 0.79

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.00084
      AAA_18   2 lltGtpGvGKttlakeLskrl.gf..................gvnlrdvakenglllevdpe..aldeskrldedkldklldaleen 67 
                 ll G +GvGK+++ ++ +k+   +                   + +++   e g l   d     +de++ ++ d + ++l+a+e++
  KOO24673.1 369 LLVGDAGVGKSQVLRYAAKLSpRSvlttgigstaagltctavKDTSGEWMLEAGALVLADGGlcCVDEFDSIKNDERTAVLEAMEQQ 455
                 689**************9984333566666667666666666555555555555555555557777777777777777777777765 PP

  == domain 2  score: 0.7 bits;  conditional E-value: 0.58
      AAA_18  28 lrdvakenglllevdpealdeskrldedkldklldaleenssaleegknlvidghlaeles 88 
                  + v++  +++   +++  ++  r  + +l++l+++ +++++ + ++++ ++d ++a l+ 
  KOO24673.1 582 AQRVLQAYYSRMRATAD--RDASRSTIRMLEALVRLAQAHARLMFQHEVSLVDACHAILLM 640
                 55666666667777777..8889999999999999999999999999999*****998875 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.1    0.0002      0.23       1     116 [.     368     486 ..     368     495 .. 0.71

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 0.0002
                 EEEESSTTSSHHHHHHHHHHHHTHEEEEEETTTCSSSSTTHHHHHHHHHHHHHHHTS......TSEEEEEETGGGHHHHHTTCCCHHHHHHHHHHHHHH CS
         AAA   1 vllyGppGtGKTllakavakelgvefleisgsellskyvgesekkirelfkeakeka......kpsilfiDEidalaksrsgseseeeervvnqLltel 93 
                 +ll+G  G+GK+ + +  ak + +++l++   +      g +   ++++  e   +a      +     +DE+d++ +++       ++ v++++ ++ 
  KOO24673.1 368 MLLVGDAGVGKSQVLRYAAKLSPRSVLTTGIGSTA---AGLTCTAVKDTSGEWMLEAgalvlaDGGLCCVDEFDSIKNDE-------RTAVLEAMEQQT 456
                 89*******************99999888888888...55555555555555322223366754488999******7666.......444555555554 PP

                 HHTTTS......SSTEEEEEEESS.GGGST CS
         AAA  94 dgvkkk......eskvivigatnr.pdkld 116
                   v k       + k++vi+atn    k+d
  KOO24673.1 457 ISVAKAgmvcklRTKCTVIAATNPkSGKMD 486
                 444444888888888********7555555 PP

>> VWA_3  von Willebrand factor type A domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.1   0.00019      0.23      61     125 ..     468     533 ..     449     542 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00019
       VWA_3  61 lqealqkikelelslgasnlegaLk..ealrqpakpgevrsvilltDgssaqgeervsdlisrarek 125
                 l+  +  i++  +++g ++++ aL   + l++p    +++ v+ll+D +++  ++r+s+ i +a+++
  KOO24673.1 468 LRTKCTVIAATNPKSGKMDKHVALHsqTGLSTP-LISRFDIVLLLSDAHDDDRDKRISAHILAATAA 533
                 56667788999999**********965556665.7788***********************988755 PP

>> AAA_7  P-loop containing dynein motor region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.1   0.00033       0.4      30      62 ..     362     393 ..     358     412 .. 0.77

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.00033
       AAA_7  30 lknkkpvllvGptGtGKtviikdllkkldkeky 62 
                 ++ + ++llvG++G+GK+ +++    kl+++++
  KOO24673.1 362 VRGESHMLLVGDAGVGKSQVLRY-AAKLSPRSV 393
                 56789*************99874.444444555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (751 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       698  (0.0389313); expected 358.6 (0.02)
Passed bias filter:                      510  (0.0284455); expected 358.6 (0.02)
Passed Vit filter:                        64  (0.00356964); expected 17.9 (0.001)
Passed Fwd filter:                        16  (0.000892409); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              15  [number of targets reported over threshold]
# CPU time: 0.68u 0.30s 00:00:00.98 Elapsed: 00:00:00.47
# Mc/sec: 4801.78
//
Query:       KOO24674.1  [L=325]
Description: ubiquitin thioesterase otu1-like protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.9e-08   33.3   0.0      9e-08   32.7   0.0    1.3  1  OTU        OTU-like cysteine protease
  ------ inclusion threshold ------
      0.077   13.0   1.7       0.15   12.1   1.7    1.5  1  UIM        Ubiquitin interaction motif
       0.15   12.4   0.1       0.27   11.6   0.1    1.3  1  zf-C2H2_2  C2H2 type zinc-finger (2 copies)


Domain annotation for each model (and alignments):
>> OTU  OTU-like cysteine protease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.7   0.0   1.5e-11     9e-08       2     100 ..     129     222 ..     128     243 .. 0.75

  Alignments for each domain:
  == domain 1  score: 32.7 bits;  conditional E-value: 1.5e-11
                 -SS-HHHHHHHHCCCSS.SHCCHHHHHHHHHCHHHHHHTSSHHCCHHHHC.CHHHHHHHTTSTTHHHHHHHHHHHHHHCTS-EEEETTSSSSEEEE-TT CS
         OTU   2 gDGnCLlravsqqlwgvsdelrkakvseLreklaeylrehseelelflee.eeegylkeiektaawggeleifalahiLrrpIiVlksesgeelvglkf 99 
                 +D  CL++av++++ g +  +r+     Lr+ +a ++r    ++++ + + + + y+  i  +  wgg++e+ +l++ + + I     + ++    + +
  KOO24674.1 129 ADNSCLFAAVAHAMHGSA--GRRERADGLRQVVAGAVRADPIQFSEAMLGqDPDAYCAWITRQDTWGGHIELAILSKHFGVEIAAFDIQTTR----VDV 221
                 6889**********8776..8888899***********88888877666505566*************************999883333333....233 PP

                 - CS
         OTU 100 e 100
                 +
  KOO24674.1 222 Y 222
                 3 PP

>> UIM  Ubiquitin interaction motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   1.7   2.5e-05      0.15       2      14 ..      89     101 ..      89     104 .. 0.93

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 2.5e-05
         UIM   2 EdedLqrAlalSl 14 
                 Ede++q AlalSl
  KOO24674.1  89 EDEEMQIALALSL 101
                 9***********9 PP

>> zf-C2H2_2  C2H2 type zinc-finger (2 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.1   4.5e-05      0.27      29      78 ..     272     321 ..     254     324 .. 0.79

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 4.5e-05
   zf-C2H2_2  29 ereylvdleglleylrekieekleClyCekefkslealreHmkkkgHcki 78 
                 e+++lv  ++ l++ +++ + +l+Cl+C+k     +   eH k+ gH ++
  KOO24674.1 272 EAHSLVAEQHGLRKFTDTSKFTLRCLVCQKGLVGEAGALEHAKSTGHANF 321
                 5667776666677777777778********9889999**********875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (325 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       435  (0.0242624); expected 358.6 (0.02)
Passed bias filter:                      360  (0.0200792); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.44u 0.27s 00:00:00.71 Elapsed: 00:00:00.43
# Mc/sec: 2285.23
//
Query:       KOO24675.1  [L=209]
Description: elongation factor-2 kinase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.8e-10   40.8   0.0    4.3e-10   40.2   0.0    1.2  1  VWA_2      von Willebrand factor type A domain
    5.3e-08   33.3   0.0    6.4e-08   33.0   0.0    1.1  1  VWA        von Willebrand factor type A domain
    0.00039   18.5   0.0    0.00046   18.3   0.0    1.0  1  TssR       Type VI secretion system, TssR
     0.0066   16.3   0.0      0.014   15.2   0.0    1.7  1  Med25_VWA  Mediator complex subunit 25 von Willebrand factor 
  ------ inclusion threshold ------
      0.022   14.7   0.0      0.033   14.1   0.0    1.3  1  VWA_3      von Willebrand factor type A domain


Domain annotation for each model (and alignments):
>> VWA_2  von Willebrand factor type A domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.2   0.0   1.2e-13   4.3e-10       2     106 ..      50     161 ..      49     162 .. 0.84

  Alignments for each domain:
  == domain 1  score: 40.2 bits;  conditional E-value: 1.2e-13
       VWA_2   2 vfvlDtSgSmrngdygptrleaakdaveallksl....p.gdrvglvtfsdgp.......evlipltkdkakilnalrnleak...gggtnlaaaLqla 85 
                  fv+D++gSm+++      ++aak+ +ea++++l      ++r+glv+++d+p       ++ + ++ d + +++ l  l a    +g   ++a+L+ a
  KOO24675.1  50 CFVMDVTGSMGSY------IAAAKQDIEAISDRLaaseGyDVRFGLVAYRDHPpqdqsfvTRQFAFSADVQVMKQNLSTLSANgggDGPEAVEAGLKSA 142
                 69**********8......*************9966543244*********8745544446666678***************987777799******** PP

       VWA_2  86 rkalkkrrkgekrvivlitDg 106
                  +a +++  ++ +v+vli+D+
  KOO24675.1 143 LEAPWRD--NAMKVVVLIADA 161
                 **99977..6*********97 PP

>> VWA  von Willebrand factor type A domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.0   0.0   1.8e-11   6.4e-08       1     117 [.      48     165 ..      48     200 .. 0.81

  Alignments for each domain:
  == domain 1  score: 33.0 bits;  conditional E-value: 1.8e-11
                 EEEEEEE-STTSCHHHHHHHHHHHHHHHHHHT.BTTTTEEEEEEEESSS.......EEEEEETTSHC...HHHHHHHHHHTGSGGGGSSC-HHHHHHHH CS
         VWA   1 DivfvlDgSgsmgeenfekvkefikklvekle.vgpegtrvglvqfsse.......vktefslndys...skeellsalnnlkysgggttntgkalkya 88 
                 D+ fv+D+ gsm ++ +  +k+ i+ + ++l  +  +++r+glv + ++       v+ +f         + + ++++l++l+  ggg+    +a++++
  KOO24675.1  48 DLCFVMDVTGSM-GSYIAAAKQDIEAISDRLAaSEGYDVRFGLVAYRDHppqdqsfVTRQF-----AfsaDVQVMKQNLSTLSANGGGDG--PEAVEAG 138
                 99**********.99*****************66999**********99654444444444.....3555779********977777776..8899999 PP

                 HHHHHHHHGTSSTTSEEEEEEEESS--CS CS
         VWA  89 leklfkssagaRenakkviilltdGksnd 117
                 l++++++  +  +na kv++l++d  +++
  KOO24675.1 139 LKSALEAPWR--DNAMKVVVLIADAPPHG 165
                 9976666555..9***********76654 PP

>> TssR  Type VI secretion system, TssR
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.3   0.0   1.3e-07   0.00046     303     400 ..      48     144 ..      35     158 .. 0.83

  Alignments for each domain:
  == domain 1  score: 18.3 bits;  conditional E-value: 1.3e-07
        TssR 303 NivFvidgssemkkylpqlvnliqsLetkfekssrktsvkfGavvykddrgnkkpgtsslst...dykkllsfLekeakskraeseskeepvwealkka 398
                  + Fv+d   +m +y+++ ++ i+ ++ +++  s++++v+fG v y+d++ +++ ++++      d++ + + L++ +++      +++e v  +lk+a
  KOO24675.1  48 DLCFVMDVTGSMGSYIAAAKQDIEAISDRLAA-SEGYDVRFGLVAYRDHPPQDQSFVTRQFAfsaDVQVMKQNLSTLSAN---GGGDGPEAVEAGLKSA 142
                 578***************************99.89**************9999988877554555888888888888887...4445556678888887 PP

        TssR 399 le 400
                 le
  KOO24675.1 143 LE 144
                 76 PP

>> Med25_VWA  Mediator complex subunit 25 von Willebrand factor type A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.0     4e-06     0.014      42     150 ..      73     173 ..      43     198 .. 0.77

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 4e-06
   Med25_VWA  42 ieerdllsesastlyglvvykaadslpeplvql.sgptssvekllqwldkiefsGgggesvaliaEGLatalqlfddlkqirepssavqkhciLvcnsp 139
                 i +r + se     +glv y+ +    ++ v++ ++   +v+ + q+l+ ++  Ggg +  a +  GL +al++       r+   ++ k+++L++  p
  KOO24675.1  73 ISDRLAASEGYDVRFGLVAYRDHPPQDQSFVTRqFAFSADVQVMKQNLSTLSANGGGDGPEA-VEAGLKSALEAP-----WRD---NAMKVVVLIADAP 162
                 566888899999999*****9998777776655167777999999*****************.999******974.....333...57799******** PP

   Med25_VWA 140 Pyrlpvvesvk 150
                 P+ l+ +e   
  KOO24675.1 163 PHGLAGPELFM 173
                 **998777654 PP

>> VWA_3  von Willebrand factor type A domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   0.0   9.1e-06     0.033       2     135 ..      48     193 ..      47     202 .. 0.69

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 9.1e-06
       VWA_3   2 evvivvDvsssmsaenklvkdaLsvalrqLptndkiavllfgt..kprplfpg......sravsaaelqealqkikelels...lgasnlegaLkealr 89 
                 ++ +v+Dv+ sm + ++++k+ + ++   L  ++ + v+   +  ++ p   +       + + +a++q ++q + +l+++   +g + +e+ Lk al+
  KOO24675.1  48 DLCFVMDVTGSMGSYIAAAKQDIEAISDRLAASEGYDVRFGLVayRDHPP--QdqsfvtRQFAFSADVQVMKQNLSTLSANgggDGPEAVEAGLKSALE 144
                 688999*****99877999999**99999999999888743332222222..222333333344589*************9666677889999****** PP

       VWA_3  90 qpakpgevrsvilltDgssaq..geervsdlis.rarekirfhalglgs 135
                 +p +    + v+l+ D  +    g e ++++ + +++++++f++ ++ +
  KOO24675.1 145 APWRDNAMKVVVLIADAPPHGlaGPELFMEAERgDEAQAATFISATISP 193
                 **99999999999999876442222333333332344556666655555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (209 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       428  (0.0238719); expected 358.6 (0.02)
Passed bias filter:                      379  (0.0211389); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.42u 0.23s 00:00:00.65 Elapsed: 00:00:00.39
# Mc/sec: 1600.46
//
Query:       KOO24676.1  [L=446]
Description: ATP-dependent RNA helicase ded1, partial [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.9e-31  108.1   0.0    3.1e-29  102.0   0.0    2.5  3  DEAD        DEAD/DEAH box helicase
    2.4e-19   69.7   0.0    1.1e-18   67.6   0.0    1.9  2  Helicase_C  Helicase conserved C-terminal domain
  ------ inclusion threshold ------
      0.026   14.9   3.2      0.072   13.5   3.2    1.8  1  IATP        Mitochondrial ATPase inhibitor, IATP
       0.45   10.5   1.0        2.3    8.2   0.1    2.1  2  DUF3926     Protein of unknown function (DUF3926)


Domain annotation for each model (and alignments):
>> DEAD  DEAD/DEAH box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.8   0.0       2.1   9.2e+03      57      79 ..      90     112 ..      89     118 .. 0.79
   2 !  102.0   0.0   6.9e-33   3.1e-29       1     113 [.     149     270 ..     149     276 .. 0.96
   3 !    7.6   0.0   0.00068       3.1     139     175 ..     266     297 ..     265     298 .. 0.78

  Alignments for each domain:
  == domain 1  score: -3.8 bits;  conditional E-value: 2.1
                 HHHHHHHHHHHHHHTTTSTSEEE CS
                 xxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD  57 reLaeqtlnnlkkfkkyidlrvl 79 
                 ++L  q+ ++  +f ky+d++v+
  KOO24676.1  90 KALFAQQGSQGIQFDKYADIKVE 112
                 67888999999999999888875 PP

  == domain 2  score: 102.0 bits;  conditional E-value: 6.9e-33
                 -HHHHHHHHHHHTTCEEEEEESTTSSHHHHHHHHHHHHHHHS.........TTSTS-EEEEEESSHHHHHHHHHHHHHHTTTSTSEEEEEETTSSHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.........xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD   1 tdiQaeaiplilgggdvlvaaeTGsGKTlaflipvlqivyet.........kgktgpkalivePtreLaeqtlnnlkkfkkyidlrvlliiggvaardq 90 
                 t+iQ++a+pl+l g d++++a+TGsGKT+aflipv++++++           g  +p+a+i++PtreLa q+  +++k+++   lr ++++gg ++r+q
  KOO24676.1 149 TPIQRHAVPLALAGCDLMCCAQTGSGKTAAFLIPVCSSLSSPaaggttvgqPGAAKPRAVIMAPTRELASQIGLEAQKLTNRSPLRSVAVYGGADQRKQ 247
                 89*************************************87799999999889999*************************999*************** PP

                 HHHHHTTCSEEEEEHHHHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD  91 lskldngvdivvgtpgrlddlls 113
                  ++l  gvd++v+tpgrl d+++
  KOO24676.1 248 ARELALGVDLIVATPGRLNDFIR 270
                 ********************874 PP

  == domain 3  score: 7.6 bits;  conditional E-value: 0.00068
                 HHHHHHHHHHSHHHCTTSTTTSEEEEEESSBSHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD 139 sdfinrilnqlpqitcdgklqrqvivlSATlpkdvkk 175
                  dfi+ri++++p +     ++r+++++SAT+p  +++
  KOO24676.1 266 NDFIRRIVRTMPAA-----AERHTLLFSATFPAPIQQ 297
                 58999999999644.....44669*******987765 PP

>> Helicase_C  Helicase conserved C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.0      0.56   2.5e+03      17      56 ..     205     248 ..     202     261 .. 0.73
   2 !   67.6   0.0   2.4e-22   1.1e-18       5      96 ..     338     439 ..     333     445 .. 0.84

  Alignments for each domain:
  == domain 1  score: -1.2 bits;  conditional E-value: 0.56
                 SEEEEEESSHHHHHH....HHHHHHHTTSTEEEESTTSTHHHHH CS
  Helicase_C  17 gkilifvntidrlek....vklllekkgikvavlhgelpqnere 56 
                  +++i+++t++ +++    ++ l++++ +++++++g   q+++ 
  KOO24676.1 205 PRAVIMAPTRELASQigleAQKLTNRSPLRSVAVYGGADQRKQA 248
                 57889999999555556666777777789999999977777665 PP

  == domain 2  score: 67.6 bits;  conditional E-value: 2.4e-22
                 HHHHHHHHTTTTSEEEEEESSHHHHHH.HHHH..........HHHT.TSTEEEESTTSTHHHHHHHHHHHHTTSSSEEEESGGGTSSSTSTTESEEEES CS
  Helicase_C   5 allellkleeeggkilifvntidrlek.vkll..........lekk.gikvavlhgelpqnereeileqfnkgesdvLiatdvaerGidipkvnlVinf 91 
                  +++ l    + g++l+fv++++++    k l          +e++  i +  +hg+ +q++re++l++f++g+++vL+atdva+rG+d+p+v++Vin+
  KOO24676.1 338 LVVKAL--ADRSGRSLVFVEKKRTATWlKKTLrhggpaeggeEERFePIAAEDIHGDRSQSQREAALAAFRSGSCRVLVATDVAARGLDVPGVEHVINM 434
                 444554..7899***********9954444447788888876555577*************************************************** PP

                 SSSSS CS
  Helicase_C  92 dlprn 96 
                 dlp+ 
  KOO24676.1 435 DLPFA 439
                 **975 PP

>> IATP  Mitochondrial ATPase inhibitor, IATP
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   3.2   1.6e-05     0.072      31      96 ..      14      92 ..       8      94 .. 0.83

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 1.6e-05
        IATP 31 gdsGapkgtGggGsi.......reagdafgkrEaA......sEeeyirqrekekLaeLkeklaeqkeHleeleeHieai 96
                 d Gap+g G gG +       +++   ++k+ aA      sE+ey++q +++ L++   k a      +e ++H++a+
  KOO24676.1 14 ADRGAPPGRGRGGGVgaplgrqDRKESKWSKQQAAeaardrSEDEYFKQCQAQALRSGEAKKAAAGLTGQEADAHEKAL 92
                689************9****98666667888766633355569*************99999998888889999998876 PP

>> DUF3926  Protein of unknown function (DUF3926)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.3   0.1      0.16     7e+02       8      15 ..     148     155 ..     146     158 .. 0.87
   2 ?    8.2   0.1   0.00052       2.3       7      19 ..     291     303 ..     289     304 .. 0.89

  Alignments for each domain:
  == domain 1  score: 0.3 bits;  conditional E-value: 0.16
     DUF3926   8 PaPIQQSA 15 
                 P+PIQ  A
  KOO24676.1 148 PTPIQRHA 155
                 9****876 PP

  == domain 2  score: 8.2 bits;  conditional E-value: 0.00052
     DUF3926   7 LPaPIQQSAkkvL 19 
                  PaPIQQ Ak  L
  KOO24676.1 291 FPAPIQQLAKEFL 303
                 6*********987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (446 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       508  (0.028334); expected 358.6 (0.02)
Passed bias filter:                      344  (0.0191868); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.52u 0.26s 00:00:00.78 Elapsed: 00:00:00.43
# Mc/sec: 3089.37
//
Query:       KOO24677.1  [L=289]
Description: hypothetical protein Ctob_012394 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (289 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       778  (0.0433934); expected 358.6 (0.02)
Passed bias filter:                      375  (0.0209158); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.45u 0.24s 00:00:00.69 Elapsed: 00:00:00.40
# Mc/sec: 2175.59
//
Query:       KOO24678.1  [L=351]
Description: chaperone protein DNAk (heat shock protein 70) (heat shock 70 kda protein) [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    8.6e-66  222.4   0.0    1.8e-64  218.0   0.0    2.0  2  HSP70     Hsp70 protein
    2.7e-14   52.8   0.4    4.1e-12   45.6   0.0    2.5  3  MreB_Mbl  MreB/Mbl protein
  ------ inclusion threshold ------
       0.01   16.2   0.0        2.5    8.6   0.0    2.6  2  FtsA      Cell division protein FtsA


Domain annotation for each model (and alignments):
>> HSP70  Hsp70 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  218.0   0.0     3e-68   1.8e-64       2     244 ..      34     275 ..      33     305 .. 0.95
   2 !    2.4   0.0    0.0056        34     325     342 ..     325     342 ..     320     350 .. 0.86

  Alignments for each domain:
  == domain 1  score: 218.0 bits;  conditional E-value: 3e-68
                 EEEEEXSSEEEEEEEETTEEEEEXXTTSXSSEESEEEEXTT.SEEETHHHHHCTTTTGGGEEEXGGGTTTXBTTSHHHHHHHTTXSSEEEEETTSBEEE CS
       HSP70   2 iGiDLGttnsvvavmeggkievianeegnrttPsvvaFtkk.erlvGeaAkrqavtnpkntvfsvKrliGrkfsdpevqkeikelpykvvkkengkavv 99 
                 +GiDLGttns++a++ +g +e++ n+ g+ ttPsvv++  +   +vG+ A  +    + ntv+++Kr+iGr fs   vq+ +      v + + g++v 
  KOO24678.1  34 VGIDLGTTNSAIAILTDGAPEIVPNSRGELTTPSVVSYRADgSVIVGADAVVEPSCHVLNTVYAAKRFIGRPFSS--VQAYKAAAGAAVREGNAGEPVF 130
                 8****************************************999******************************8..9999999********9999987 PP

                 EEEET.TEEEEHHHHHHHHHHHHHHHHHHHHTSBEEEEEEEEXTTXXHHHHHHHHHHHHHTTXEEEEEEEHHHHHHHHHHTCCSSSCEEEEEEEEXSSX CS
       HSP70 100 eveaa.gekftpeqisamvLkklketaeaylgkkvtdavitvPaYfndaqRqatkdAgkiAGLnvlRivNepTAaalaYGldkkdkernvlvyDlGggt 197
                    a  +e+  pe++sa+vL+ l ++ae ++g + + av+++PaYf+++qR at  A+++AGL  + ++ ep Aa +a  l+      ++lv+DlG gt
  KOO24678.1 131 VLPARpDERIRPEEVSAQVLRALLDDAERHTGLRAERAVVAIPAYFDEQQRFATLTAARLAGLSEVQLLAEPVAACVAHQLKGGT--GTILVFDLGAGT 227
                 77665377*************************************************************************9887..9*********** PP

                 EEEEEEEEE.TTEEEEEEEEEETTXSHHHHHHHHHHHHHHHHHHHHSX CS
       HSP70 198 fdvSilele.kGvfevkaTagDthlGGedfDealvehlveefkkkegi 244
                 +dvS+l++  +G +ev+aT+gD +lGG+dfD+al+ +l++e + + g 
  KOO24678.1 228 YDVSVLRVTpSGALEVVATSGDARLGGNDFDAALLGWLRKERQARLGT 275
                 ********879*****************************98877655 PP

  == domain 2  score: 2.4 bits;  conditional E-value: 0.0056
                 GGCSEEEEESGGGGSHHH CS
       HSP70 325 eeidevvlvGGstRiPkv 342
                 + +de+vlvGG t + +v
  KOO24678.1 325 SPVDEIVLVGGGTHMVAV 342
                 569**********99887 PP

>> MreB_Mbl  MreB/Mbl protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.9   0.1    0.0016       9.6       3      37 ..      33      76 ..      31     120 .. 0.72
   2 !   45.6   0.0   6.9e-16   4.1e-12      72     199 ..     144     276 ..     130     283 .. 0.86
   3 ?   -3.2   0.2      0.47   2.8e+03     149     161 ..     330     342 ..     324     343 .. 0.73

  Alignments for each domain:
  == domain 1  score: 4.9 bits;  conditional E-value: 0.0016
                EEEEEE-SSEEEEEETTTE...EE......EEEES-EEEETTT- CS
    MreB_Mbl  3 dlgiDLGtantlvyvkgkg...iv......lnepsvvAikkktk 37
                ++giDLGt+n  + +   g   iv      l+ psvv ++ + +
  KOO24678.1 33 TVGIDLGTTNSAIAILTDGapeIVpnsrgeLTTPSVVSYRADGS 76
                79********9886554442334533333345688887777644 PP

  == domain 2  score: 45.6 bits;  conditional E-value: 6.9e-16
                 HHHHHHHHHHHHHHHTSS-SS--EEEEEE-SS--HHHHHHHHHHHHHTT-SEEEEEEHHHHHHHHTT--TTSSS-E.EEEEE-SS-EEEEEE......E CS
    MreB_Mbl  72 evaeellkyfikkvkkkkslskprvvicvPsgiteverrAvkeaakkaGarevllieeplaAAiGaglpveepsgn.mvvdiGggttevavi......s 163
                 ev +++l+ +++++++++ l+ +r v+++P   +e +r A   aa+ aG +ev+l+ ep+aA +  +l+    +g+ +v d+G+gt +v+v+      +
  KOO24678.1 144 EVSAQVLRALLDDAERHTGLRAERAVVAIPAYFDEQQRFATLTAARLAGLSEVQLLAEPVAACVAHQLK--GGTGTiLVFDLGAGTYDVSVLrvtpsgA 240
                 78899**********************************************************988775..556652788***********94433222 PP

                 TTEEEEEEEES-SHHHHHHHHHHHHHHHHSEE--HH CS
    MreB_Mbl 164 lggivtsksvrvaGdeldeaiikyirkkynlliGer 199
                 l  + ts   r++G+++d a++ ++rk+ +  +G++
  KOO24678.1 241 LEVVATSGDARLGGNDFDAALLGWLRKERQARLGTA 276
                 3445677889*****************999888865 PP

  == domain 3  score: -3.2 bits;  conditional E-value: 0.47
                 EEEE-SS-EEEEE CS
    MreB_Mbl 149 vvdiGggttevav 161
                 +v +Gggt  vav
  KOO24678.1 330 IVLVGGGTHMVAV 342
                 5667777777776 PP

>> FtsA  Cell division protein FtsA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.6   0.0   0.00042       2.5       1      61 [.      34     142 ..      34     213 .. 0.62
   2 ?    5.2   0.0    0.0048        28       2      29 ..     220     253 ..     219     280 .. 0.80

  Alignments for each domain:
  == domain 1  score: 8.6 bits;  conditional E-value: 0.00042
                 EEEEE-SSSEEEEEEETTEEEE..........EEEES-...-HHHHHHH...............HHHHHT--HHHHHHHHHHH--S--........... CS
                 xxxxxxxxxxxxxxxxxxxxxx..........xxxxxx...xxxxxxxx...............xxxxxxxxxxxxxxxxxxxxxxxx........... RF
        FtsA   1 alvDiGagktdvavaedgalvh..........lrvigv...ggngitkd...............iakalrtaveeAerikikyGsala........... 60 
                 +++D+G++ + +a++ dga+             +v+ +   g+  +  d               +++ ++ ++++ +  k   G+a++           
  KOO24678.1  34 VGIDLGTTNSAIAILTDGAPEIvpnsrgelttPSVVSYradGSVIVGADavvepschvlntvyaAKRFIGRPFSSVQAYKAAAGAAVRegnagepvfvl 132
                 68****************855445556665555555555554444444466666777777788888888888888888888888887766666666666 PP

                 .........E CS
                 .........x RF
        FtsA  61 .........e 61 
                          +
  KOO24678.1 133 parpderirP 142
                 6666444443 PP

  == domain 2  score: 5.2 bits;  conditional E-value: 0.0048
                 EEEE-SSSEEEEEEETTEEEEEEEES-......- CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxx......x RF
        FtsA   2 lvDiGagktdvavaedgalvhlrvigv......g 29 
                 + D+Gag+ dv+v++     +l+v+ +      g
  KOO24678.1 220 VFDLGAGTYDVSVLRVTPSGALEVVATsgdarlG 253
                 56**************877779999985444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (351 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       285  (0.015896); expected 358.6 (0.02)
Passed bias filter:                      244  (0.0136092); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.47u 0.21s 00:00:00.68 Elapsed: 00:00:00.40
# Mc/sec: 2659.08
//
Query:       KOO24679.1  [L=1007]
Description: 2-oxoglutarate e1 subunit [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.4e-66  221.9   0.0    9.2e-66  220.9   0.0    1.6  1  Transket_pyr     Transketolase, pyrimidine binding domain
    3.3e-65  220.0   0.0    5.2e-65  219.4   0.0    1.2  1  E1_dh            Dehydrogenase E1 component
    5.4e-52  175.5   0.0    9.5e-52  174.7   0.0    1.4  1  OxoGdeHyase_C    2-oxoglutarate dehydrogenase C-terminal
    3.3e-19   68.2   0.6    7.4e-19   67.1   0.6    1.7  1  2-oxogl_dehyd_N  2-oxoglutarate dehydrogenase N-terminus
  ------ inclusion threshold ------
      0.078   12.4   0.1       0.34   10.4   0.0    2.0  2  PI-TkoII_IV      DNA polymerase II intein Domain IV


Domain annotation for each model (and alignments):
>> Transket_pyr  Transketolase, pyrimidine binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  220.9   0.0   2.6e-69   9.2e-66       2     177 ..     640     856 ..     639     857 .. 0.99

  Alignments for each domain:
  == domain 1  score: 220.9 bits;  conditional E-value: 2.6e-69
                   EEEHHHHHHHHHHHHHCTTTTEEEEESSTHHHHTTCHCCHHEGGT.................TEGEEE--S-HHHHHHHHHHHHHHCT.TEEEEEEE CS
  Transket_pyr   2 kiawrkaeaealaellkedpevvligaDvaggtfsvrkgllhdqg.................egrvidsgisEqavlgfavGaalagp.llviveaq 80 
                   +i+w+ ae++a ++ll e+++v+++g+Dv++gtfs+r+ + hdq+                 +++ ++s++sE+avlgf++G++l++p +l+++eaq
    KOO24679.1 640 GIDWALAEQLAWGTLLVEGNHVRISGQDVERGTFSHRHCVIHDQKnfpnkytplahikptqaQFQACNSSLSEFAVLGFELGYSLENPnALIMWEAQ 736
                   69*********************************************************************************************** PP

                   EHHHHGGGHHGGHHHHHCHHHHHT--EEEEESBSGGGSTTGTTTSBSSHHHHHHTSTT.......................EEEE--SSHHHHHHHH CS
  Transket_pyr  81 FgdFangAqiyadqairsgeakgklkvgvvtrlpigvgedGpehqsaeleaflrlipg.......................lkvvrPsdpaetkhll 154
                   FgdFan+Aq+++dq+i+sge+k+ +++g+v++lp+g++++Gpeh+sa+le+fl+ +++                       ++v++ ++pa+++hll
    KOO24679.1 737 FGDFANTAQCMIDQFISSGEQKWLRQSGLVMMLPHGYEGQGPEHSSARLERFLQGCDDdedvfpdlstyvngkqtriqhanWQVCNVTTPANYFHLL 833
                   ************************************************************************************************* PP

                   HHHHHSSS.SEEEEEE-SSEEC. CS
  Transket_pyr 155 rrairredrkPvvlrlpksllrh 177
                   rr++ re+rkP++++ pksllrh
    KOO24679.1 834 RRQVWREFRKPLIVMSPKSLLRH 856
                   *********************98 PP

>> E1_dh  Dehydrogenase E1 component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  219.4   0.0   1.4e-68   5.2e-65       7     296 ..     252     572 ..     246     575 .. 0.91

  Alignments for each domain:
  == domain 1  score: 219.4 bits;  conditional E-value: 1.4e-68
                 HHHHHHHHHHHHTTSS-S-----TT-HHHHHHHHHTS-TT.SEEEES..S--HHHHHHTT--..HHHHHHHHTT-T.........TTSSGTT-..-E.. CS
       E1_dh   7 rrvedaldalykrkkrigfyhlsagqealkvgiaaaleke.Dliite..YReagvllargls..leeilaeltgkv.........kgkggsrh.elmy. 89 
                   +e++l+++y+  kr+g++ +++++  +k +i+ a e++ + i+++  +R++ ++la++++  +e+i+ e++g +         +g+g++++  +m  
  KOO24679.1 252 DHFESFLANKYSTAKRFGLEGCEVLIVGMKELIDTATEHGvENIVMGmpHRGRLNVLANVVRkpMEQIFNEFQGVAtpdaneqdfSGSGDVKYhLGMSy 350
                 578999**********************************988887779************999**********999********66666665544431 PP

                 ......BTT..BEEE-SSTTTH..HHHHHHHHHHHH.....HHTS---EEEEEEGGG.TT-HHHHHHHHHHHHTT--E...EEEEEEESEETTEEHHHH CS
       E1_dh  90 .....aekesrilggngivgaq..vplvaGialaak.....iegkkevailliGDgA.anqGdvyealnlaalwklpv...ifvveNNkygisTeaeka 172
                      + k +++    ++++++  +p+v+G ++ ++     ++ + ++++ll+GD+A ++qG v+e++ l++l+++++   +++v+NN++g++T+++ +
  KOO24679.1 351 srpthSGKHVHLSLVANPSHLEavNPVVEGKTRVKQhylgdVDRTGSMSLLLHGDAAfSGQGVVFETMGLSDLHNYTTggtVHIVVNNQIGFTTDPRSS 449
                 1111044556777777777777779********999*************************************************************** PP

                 -S---GGG..TTTTS-EEEEETTSHHHHHHHHHHHHHHHHTTT--EEEEEEE--SS-SSTTSHSHSSSHHHHHHHHHHHH-HHHHHHHHHHHTTSS-HH CS
       E1_dh 173 saskeladrargvgipglrVdgnDplavyeAvkfAaeraregkgpllielvtYRyggHsesDdpstyrtreeveevrkkkdpiqrlkelLvkkgvvsee 271
                 ++s++ +d+a++ ++p+++V+g+D++ v  ++k Aa +++++k++++i++v+YR +gH+e D p++++ ++++ ++ + k+  q++ e+Lv++gv++ e
  KOO24679.1 450 RSSPYCTDVAKAIQAPIFHVNGDDVESVARVCKLAALWRQRFKRDVVIDIVCYRKHGHNELDQPMFTQ-PQMYTAIGQMKPTFQKYSEQLVSEGVITTE 547
                 ********************************************************************.****************************** PP

                 HHHHHHHHHHHHHHHHHHHHHHS-- CS
       E1_dh 272 elkeiekevrkeveeavkkaeskke 296
                 e+k++ ++v +e  + ++ + ++k 
  KOO24679.1 548 EVKALSDRVYAEMSQKLEASRDYKP 572
                 ***************9999998875 PP

>> OxoGdeHyase_C  2-oxoglutarate dehydrogenase C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  174.7   0.0   2.7e-55   9.5e-52       1     152 []     860    1006 ..     860    1006 .. 0.96

  Alignments for each domain:
  == domain 1  score: 174.7 bits;  conditional E-value: 2.7e-55
  OxoGdeHyase_C    1 rSsleelaegtsFqrvledeeeealkepekvkrvvlcsGkvyydLlkerekkekekdvaivriEqlyPfpfeelkeelekYpnakelvWvQeEp 94  
                     +S+++++ +gt+F+rvl+d+ e  l +p+kv++vvlc+Gkvy+dLl++r++k+ ++dvai+riEq++Pfpf+ ++ee++kYp  +e+vW+QeEp
     KOO24679.1  860 KSDVSDFLSGTRFNRVLPDTGE-GLVAPDKVRKVVLCTGKVYFDLLQARTDKG-INDVAITRIEQISPFPFDMVQEEVRKYPG-AEVVWCQEEP 950 
                     599*******************.6899***********************875.5****************************.7********* PP

  OxoGdeHyase_C   95 kNqGawsfveprletvlkekkkkkkklryvgreasaspAtGskkvhkkeqealleeaf 152 
                     kN+Gaw++++pr+ t++++   ++ +++y+gr+++as+AtG+ + h+ke ea+l++a+
     KOO24679.1  951 KNAGAWQYARPRIVTAARDV--RSVTPKYAGRAPAASTATGYGAWHTKEIEAFLATAL 1006
                     *****************965..7789****************************9986 PP

>> 2-oxogl_dehyd_N  2-oxoglutarate dehydrogenase N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.1   0.6   2.1e-22   7.4e-19       1      40 [.      38      77 ..      38      78 .. 0.96

  Alignments for each domain:
  == domain 1  score: 67.1 bits;  conditional E-value: 2.1e-22
  2-oxogl_dehyd_N  1 dsfLsgtnaaYiEelYeayleDPsSVdesWrayFknledg 40
                     +sfL+g++a Yi+++Y a++eDP+SV+ sW+++F ++++g
       KOO24679.1 38 ESFLNGNSAPYIDDMYHAWKEDPKSVHVSWQSVFSKMDAG 77
                     59***********************************998 PP

>> PI-TkoII_IV  DNA polymerase II intein Domain IV
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.0      0.39   1.4e+03      14      66 ..     193     249 ..     188     275 .. 0.66
   2 ?   10.4   0.0   9.5e-05      0.34       4      56 ..     269     323 ..     266     332 .. 0.78

  Alignments for each domain:
  == domain 1  score: -1.4 bits;  conditional E-value: 0.39
                  HHHHHHTS-GGGCTTE...EEEEESTT-TTHHHHHHHH.HHHHTTSS---TTHHHHH CS
  PI-TkoII_IV  14 lvelllklpeeetadi...vltipvkGrknffkGmlrt.lrwifgeekrirtarryl 66 
                  l +ll +l +  t +i    + i  + + n+++  + t  + if +e+++r ++r  
   KOO24679.1 193 LRDLLNRLQDIYTGKIgveYMHIWDHEQVNWIREQIETpNKHIFSKEQKLRMLDRLC 249
                  556666666666665533336667777778888887773578999999999999853 PP

  == domain 2  score: 10.4 bits;  conditional E-value: 9.5e-05
                  -------.EEEHHHHHHTS-GGGCTTEEEEEESTT-TTHHHHHHHH.HHHHTTSS CS
  PI-TkoII_IV   4 klperee.vlnlvelllklpeeetadivltipvkGrknffkGmlrt.lrwifgee 56 
                   l++ e  ++ + el+ +  e+  ++iv+ +p +Gr n +  ++r  +  if+e 
   KOO24679.1 269 GLEGCEVlIVGMKELIDTATEHGVENIVMGMPHRGRLNVLANVVRKpMEQIFNEF 323
                  555555414568999*9**********************9998874378888875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1007 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       494  (0.0275531); expected 358.6 (0.02)
Passed bias filter:                      464  (0.0258799); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.71u 0.29s 00:00:01.00 Elapsed: 00:00:00.44
# Mc/sec: 6809.43
//
Query:       KOO24680.1  [L=1346]
Description: wd40 repeat-like protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    2.3e-61  202.3  32.0    1.2e-08   35.5   0.3    8.7  8  WD40         WD domain, G-beta repeat
      2e-14   53.3   8.2        0.2   10.6   0.1    6.2  6  Ge1_WD40     WD40 region of Ge1, enhancer of mRNA-decapping p
    5.8e-14   52.2   7.2        0.3   11.4   0.0    7.6  7  ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain
    1.9e-10   40.4   4.5        7.2    6.7   0.0    6.6  6  PD40         WD40-like Beta Propeller Repeat
    8.2e-08   32.8   0.1      2e-07   31.6   0.1    1.7  1  AAA_16       AAA ATPase domain
    2.4e-06   27.6   0.0    4.6e-06   26.6   0.0    1.4  1  NACHT        NACHT domain
    2.5e-05   24.3   0.1    8.8e-05   22.5   0.0    1.9  2  APAF1_C      APAF-1 helical domain
    0.00022   19.7   0.0        3.2    5.9   0.0    3.8  4  Frtz         WD repeat-containing and planar cell polarity ef
    0.00067   19.1   4.5        6.8    5.9   0.0    4.7  5  Nbas_N       Neuroblastoma-amplified sequence, N terminal
  ------ inclusion threshold ------
      0.036   13.4   1.5        5.9    6.1   0.0    4.3  4  WD40_like    WD40-like domain
      0.043   13.8   2.2    2.5e+02    1.7   0.0    5.8  7  WD40_3       WD domain, G-beta repeat
      0.058   12.6   0.0       0.44    9.7   0.0    2.0  2  KAP_NTPase   KAP family P-loop domain


Domain annotation for each model (and alignments):
>> WD40  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.4   0.2      0.22   3.2e+02       3      38 .]     883     915 ..     881     915 .. 0.73
   2 !   13.1   0.0   9.5e-05      0.14      19      38 .]     948     967 ..     920     967 .. 0.74
   3 !   33.3   0.2   3.9e-11   5.9e-08       8      38 .]     979    1010 ..     973    1010 .. 0.89
   4 !   35.4   0.1   8.2e-12   1.2e-08       8      38 .]    1022    1053 ..    1015    1053 .. 0.90
   5 !   34.6   0.4   1.5e-11   2.2e-08       8      38 .]    1114    1145 ..    1108    1145 .. 0.90
   6 !   35.5   0.3   7.7e-12   1.2e-08       8      38 .]    1157    1188 ..    1150    1188 .. 0.90
   7 !   33.1   0.3   4.4e-11   6.5e-08       8      38 .]    1200    1231 ..    1193    1231 .. 0.91
   8 !   32.9   0.1   4.9e-11   7.4e-08       8      38 .]    1243    1274 ..    1236    1274 .. 0.89

  Alignments for each domain:
  == domain 1  score: 2.4 bits;  conditional E-value: 0.22
                 EEEEEESSSS.EEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40   3 clrtltGHss.vtslafspdgawlasGsdDgtvriWd 38 
                 c++tl+ H+s v+s+a     + ++sGs  +++ ++d
  KOO24680.1 883 CIGTLS-HKSvVSSVA--VGYTRIVSGS-GNSIFVYD 915
                 889995.988569993..2444488999.99999887 PP

  == domain 2  score: 13.1 bits;  conditional E-value: 9.5e-05
                 ETTSSEEEEEETTSEEEEEE CS
        WD40  19 spdgawlasGsdDgtvriWd 38 
                 +++++++++G +Dgt+++Wd
  KOO24680.1 948 NQSKSLIVAGFKDGTIKVWD 967
                 556677999**********9 PP

  == domain 3  score: 33.3 bits;  conditional E-value: 3.9e-11
                  ESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40    8 tGH.ssvtslafspdgawlasGsdDgtvriWd 38  
                   +H ++++s+afspdg+ ++sGs+D+t+++Wd
  KOO24680.1  979 NAHsDNISSVAFSPDGTKIVSGSYDKTIKVWD 1010
                  489555*************************9 PP

  == domain 4  score: 35.4 bits;  conditional E-value: 8.2e-12
                  ESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40    8 tGH.ssvtslafspdgawlasGsdDgtvriWd 38  
                   +H  +++s+afspdg+ ++sGsdD+t+++Wd
  KOO24680.1 1022 NAHsRDINSVAFSPDGTNIVSGSDDKTIKVWD 1053
                  489555*************************9 PP

  == domain 5  score: 34.6 bits;  conditional E-value: 1.5e-11
                  ESSSS.EEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40    8 tGHss.vtslafspdgawlasGsdDgtvriWd 38  
                   +Hs+ ++s+afspdg+ ++sGs+D+t+++Wd
  KOO24680.1 1114 NAHSDtIWSVAFSPDGTKIVSGSRDKTIKVWD 1145
                  489556*************************9 PP

  == domain 6  score: 35.5 bits;  conditional E-value: 7.7e-12
                  ESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40    8 tGH.ssvtslafspdgawlasGsdDgtvriWd 38  
                   +H ++++s+afspdg+ ++sGsdD+t+++Wd
  KOO24680.1 1157 NAHsDWIRSVAFSPDGTKIVSGSDDKTIKVWD 1188
                  489566*************************9 PP

  == domain 7  score: 33.1 bits;  conditional E-value: 4.4e-11
                  ESSSS.EEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40    8 tGHss.vtslafspdgawlasGsdDgtvriWd 38  
                   +Hs+ ++s+afspdg+ ++sGs+D+t+++Wd
  KOO24680.1 1200 NAHSHlISSVAFSPDGTKIVSGSWDQTIKVWD 1231
                  4898889************************9 PP

  == domain 8  score: 32.9 bits;  conditional E-value: 4.9e-11
                  ESSSS.EEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40    8 tGHss.vtslafspdgawlasGsdDgtvriWd 38  
                   +Hs+ ++s+afspdg+ ++sGs D+t+++Wd
  KOO24680.1 1243 NAHSDtIRSVAFSPDGTKIVSGSTDKTIKVWD 1274
                  489556*************************9 PP

>> Ge1_WD40  WD40 region of Ge1, enhancer of mRNA-decapping protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.5   0.0   0.00014      0.21     162     216 ..     953    1011 ..     914    1021 .. 0.78
   2 !   10.6   0.1   0.00013       0.2     186     264 ..    1023    1096 ..    1013    1100 .. 0.78
   3 !    9.5   0.0   0.00028      0.41     182     215 ..    1111    1145 ..    1080    1157 .. 0.72
   4 !    6.6   0.0    0.0021       3.2     185     215 ..    1157    1188 ..    1146    1194 .. 0.86
   5 !    7.8   0.0   0.00097       1.4     185     214 ..    1200    1230 ..    1188    1236 .. 0.86
   6 !    8.7   0.0   0.00049      0.73     185     215 ..    1243    1274 ..    1232    1285 .. 0.86

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00014
    Ge1_WD40  162 miaskygsgelsveeiee.gll..kieehs.liveaafspdGtalatasedGevkffqv 216 
                   i++ ++ g ++v + +  gll  k + hs +i++ afspdGt +   s d ++k + +
  KOO24680.1  953 LIVAGFKDGTIKVWDSDAlGLLseKTNAHSdNISSVAFSPDGTKIVSGSYDKTIKVWDL 1011
                  56666666666666665545552234456667***********************9975 PP

  == domain 2  score: 10.6 bits;  conditional E-value: 0.00013
    Ge1_WD40  186 ehs.liveaafspdGtalatasedGevkffqvyledeeeprCLheWkPhdGkslssllfldnhkeesdeqfWrfaitgad 264 
                   hs  i + afspdGt +   s d ++k +        +p+   eW   d k+l    f d+  e   e++Wr  itg +
  KOO24680.1 1023 AHSrDINSVAFSPDGTNIVSGSDDKTIKVWDAIN---FRPHVESEWGSFD-KTLHYAEFSDEEDEV--ETWWRNKITGQE 1096
                  566579999*******************998653...4566777888887.778888888876654..478888888876 PP

  == domain 3  score: 9.5 bits;  conditional E-value: 0.00028
    Ge1_WD40  182 lkieehs.liveaafspdGtalatasedGevkffq 215 
                   k + hs +i + afspdGt +   s d ++k + 
  KOO24680.1 1111 EKTNAHSdTIWSVAFSPDGTKIVSGSRDKTIKVWD 1145
                  355667779***********************985 PP

  == domain 4  score: 6.6 bits;  conditional E-value: 0.0021
    Ge1_WD40  185 eehs.liveaafspdGtalatasedGevkffq 215 
                  + hs  i + afspdGt +   s d ++k + 
  KOO24680.1 1157 NAHSdWIRSVAFSPDGTKIVSGSDDKTIKVWD 1188
                  4566579999*******************985 PP

  == domain 5  score: 7.8 bits;  conditional E-value: 0.00097
    Ge1_WD40  185 eehs.liveaafspdGtalatasedGevkff 214 
                  + hs li++ afspdGt +   s d ++k +
  KOO24680.1 1200 NAHShLISSVAFSPDGTKIVSGSWDQTIKVW 1230
                  5677579999*******************98 PP

  == domain 6  score: 8.7 bits;  conditional E-value: 0.00049
    Ge1_WD40  185 eehs.liveaafspdGtalatasedGevkffq 215 
                  + hs +i + afspdGt +   s+d ++k + 
  KOO24680.1 1243 NAHSdTIRSVAFSPDGTKIVSGSTDKTIKVWD 1274
                  56776899*********************996 PP

>> ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.1   0.1      0.32   4.8e+02      55      84 ..     904     931 ..     842     938 .. 0.71
   2 !    8.8   0.0    0.0013         2       8      73 ..     952    1017 ..     947    1024 .. 0.80
   3 !    9.1   0.0    0.0011       1.6      29      69 ..    1008    1056 ..    1007    1071 .. 0.86
   4 !    7.3   0.0    0.0038       5.7      34      75 ..    1113    1154 ..    1098    1161 .. 0.86
   5 !   11.4   0.0    0.0002       0.3      35      89 ..    1157    1211 ..    1150    1214 .. 0.84
   6 !    6.7   0.1    0.0057       8.6      35      75 ..    1200    1240 ..    1195    1247 .. 0.86
   7 !   11.2   0.0   0.00023      0.34      30      76 ..    1230    1284 ..    1227    1294 .. 0.82

  Alignments for each domain:
  == domain 1  score: 1.1 bits;  conditional E-value: 0.32
  ANAPC4_WD40  55 vaysdgevrlldaesgkvvhslsvksekav 84 
                  v+ s +++ ++daes++++++++ +se  v
   KOO24680.1 904 VSGSGNSIFVYDAESQELIEEIEGTSE--V 931
                  344678999999999999999987776..4 PP

  == domain 2  score: 8.8 bits;  conditional E-value: 0.0013
  ANAPC4_WD40    8 DLiAlatedgellvfRlngqrvwtleedkedsevrsLaWkpdgklLavaysdgevrlldaesgkvv 73  
                    Li  + +dg + v   +   + + ++++++ +++s+a++pdg+ ++ +  d ++++ d  + +++
   KOO24680.1  952 SLIVAGFKDGTIKVWDSDALGLLSEKTNAHSDNISSVAFSPDGTKIVSGSYDKTIKVWDLGKLELL 1017
                   5666677777777777777777777999999*************************9998777666 PP

  == domain 3  score: 9.1 bits;  conditional E-value: 0.0011
  ANAPC4_WD40   29 vwtl........eedkedsevrsLaWkpdgklLavaysdgevrlldaes 69  
                   vw+l        e++++++ ++s+a++pdg+ ++ + +d ++++ da +
   KOO24680.1 1008 VWDLgklellseETNAHSRDINSVAFSPDGTNIVSGSDDKTIKVWDAIN 1056
                   6766667777767889999*************************99866 PP

  == domain 4  score: 7.3 bits;  conditional E-value: 0.0038
  ANAPC4_WD40   34 edkedsevrsLaWkpdgklLavaysdgevrlldaesgkvvhs 75  
                   +++++ ++ s+a++pdg+ ++ +  d ++++ d+ + +++++
   KOO24680.1 1113 TNAHSDTIWSVAFSPDGTKIVSGSRDKTIKVWDSDKLELLSE 1154
                   567788999*************************99998876 PP

  == domain 5  score: 11.4 bits;  conditional E-value: 0.0002
  ANAPC4_WD40   35 dkedsevrsLaWkpdgklLavaysdgevrlldaesgkvvhslsvksekavtclgW 89  
                   ++++  +rs+a++pdg+ ++ + +d ++++ d+ + +++++ + ++++ ++++ +
   KOO24680.1 1157 NAHSDWIRSVAFSPDGTKIVSGSDDKTIKVWDSDKLELLSEKTNAHSHLISSVAF 1211
                   5677789******************************998877666666888776 PP

  == domain 6  score: 6.7 bits;  conditional E-value: 0.0057
  ANAPC4_WD40   35 dkedsevrsLaWkpdgklLavaysdgevrlldaesgkvvhs 75  
                   +++++ ++s+a++pdg+ ++ +  d ++++ d+ + +++++
   KOO24680.1 1200 NAHSHLISSVAFSPDGTKIVSGSWDQTIKVWDSDKLELLSE 1240
                   5678899**************************99998876 PP

  == domain 7  score: 11.2 bits;  conditional E-value: 0.00023
  ANAPC4_WD40   30 wtl........eedkedsevrsLaWkpdgklLavaysdgevrlldaesgkvvhsl 76  
                   w+         ++++++ ++rs+a++pdg+ ++ +  d ++++ d+ s +++++ 
   KOO24680.1 1230 WDSdklellseKTNAHSDTIRSVAFSPDGTKIVSGSTDKTIKVWDSDSFNLLETR 1284
                   555555555556788999****************************998888765 PP

>> PD40  WD40-like Beta Propeller Repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.7   0.0    0.0048       7.2      11      24 ..     985     998 ..     977     998 .. 0.82
   2 !    6.0   0.0     0.008        12       8      24 ..    1025    1041 ..    1022    1041 .. 0.81
   3 ?    5.2   0.0     0.014        20      15      24 ..    1124    1133 ..    1122    1133 .. 0.90
   4 !    6.0   0.0    0.0081        12      14      24 ..    1166    1176 ..    1157    1176 .. 0.86
   5 !    5.9   0.0    0.0083        12      14      24 ..    1209    1219 ..    1201    1219 .. 0.85
   6 !    5.7   0.0    0.0097        14      14      24 ..    1252    1262 ..    1247    1262 .. 0.87

  Alignments for each domain:
  == domain 1  score: 6.7 bits;  conditional E-value: 0.0048
                 EEEEEE-TTSSEEE CS
        PD40  11 egaPsfSPDGkrla 24 
                 + + +fSPDG++++
  KOO24680.1 985 ISSVAFSPDGTKIV 998
                 66779*******96 PP

  == domain 2  score: 6.0 bits;  conditional E-value: 0.008
                  SS.EEEEEE-TTSSEEE CS
        PD40    8 pgnegaPsfSPDGkrla 24  
                  + ++ + +fSPDG+ ++
  KOO24680.1 1025 SRDINSVAFSPDGTNIV 1041
                  66777889******996 PP

  == domain 3  score: 5.2 bits;  conditional E-value: 0.014
                  EE-TTSSEEE CS
        PD40   15 sfSPDGkrla 24  
                  +fSPDG++++
  KOO24680.1 1124 AFSPDGTKIV 1133
                  8*******96 PP

  == domain 4  score: 6.0 bits;  conditional E-value: 0.0081
                  EEE-TTSSEEE CS
        PD40   14 PsfSPDGkrla 24  
                   +fSPDG++++
  KOO24680.1 1166 VAFSPDGTKIV 1176
                  69*******96 PP

  == domain 5  score: 5.9 bits;  conditional E-value: 0.0083
                  EEE-TTSSEEE CS
        PD40   14 PsfSPDGkrla 24  
                   +fSPDG++++
  KOO24680.1 1209 VAFSPDGTKIV 1219
                  69*******96 PP

  == domain 6  score: 5.7 bits;  conditional E-value: 0.0097
                  EEE-TTSSEEE CS
        PD40   14 PsfSPDGkrla 24  
                   +fSPDG++++
  KOO24680.1 1252 VAFSPDGTKIV 1262
                  58*******96 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.6   0.1   1.3e-10     2e-07       6     161 ..     105     249 ..     103     261 .. 0.70

  Alignments for each domain:
  == domain 1  score: 31.6 bits;  conditional E-value: 1.3e-10
      AAA_16   6 eeeleqLlsalervrsgrpelvllsGesGvGKsslvrellralekdggiflrgkcdqlesaipysalaqalareellrqlldeaesaeleawrekleea 104
                 e   +++l  l++ +s+  +l  l G  G+GKs l  ell+++  + + +  ++ d           aq +    llr l+++++   l+ ++ekle++
  KOO24680.1 105 EWAFAEILKWLNDPASP--QLFWLMGGGGTGKSVLTAELLDRVINRTVAWHFCRHDNP---------AQSAPG-PLLRSLAAMLAH-RLQGYKEKLEAT 190
                 55555556666655544..899******************999999666677777666.........777856.99****999777.666677766665 PP

      AAA_16 105 laavpelagaeasrllellkrll..allsrderplvlvlDdlqwadeaslql.laaLlrl 161
                   ++ ++++ + + + +l+   l  ++ + +erpl+++lD l+ +  +s++  la +++ 
  KOO24680.1 191 GVPGEAMDDPA-ELFKALFETPLllSKVQAPERPLLIILDALDELPKESQKPlLAVIASQ 249
                 44333333332.44444444433348888899*************999999856655554 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.6   0.0   3.1e-09   4.6e-06       2     141 ..     123     275 ..     122     293 .. 0.87

  Alignments for each domain:
  == domain 1  score: 26.6 bits;  conditional E-value: 3.1e-09
                 CEEEEC-TTTCHHHHHHHHHHHHCTS-SCCCC-SEEEEEETTTTTTS-........-HCHHHCCCCTS--SSS-C.......................C CS
       NACHT   2 lvilqGeaGsGKTtLlqklalawaegklpqgafklvFflslrelsrsgna.....rsladllfsqlpepaapvse.......................v 72 
                 l +l G  G GK++L ++l +    ++        v ++++r ++  + a     rsla +l+  l+  +++ +                         
  KOO24680.1 123 LFWLMGGGGTGKSVLTAELLDRVINRT--------VAWHFCRHDNPAQSApgpllRSLAAMLAHRLQGYKEKLEAtgvpgeamddpaelfkalfetplL 213
                 5799***************99988877........6799999999999999999*********9999999999889********************999 PP

                 HHHHCCSCCCEEEEEE-STT-SS-TCH.........HHHHHCTTTTT--EEEEEEECCCHHHHCTTSSC CS
       NACHT  73 wavllelperlLlilDglDelvtdlgqkekqpvrtlLselirkkllpeasllltvrpralrdleeqlee 141
                  + +++ ++ lL+ilD+lDel+++ ++    p+  ++++ +++ l++  +l++t+r +    + + l +
  KOO24680.1 214 LSKVQAPERPLLIILDALDELPKESQK----PLLAVIASQLSR-LPQWLKLFVTSREEPQ--ITRALNS 275
                 999999999999**********95555....************.8888888888887654..6666655 PP

>> APAF1_C  APAF-1 helical domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.1       4.7   7.1e+03      27      47 ..     581     603 ..     574     606 .. 0.60
   2 !   22.5   0.0   5.9e-08   8.8e-05      52     130 ..     783     860 ..     770     865 .. 0.90

  Alignments for each domain:
  == domain 1  score: -3.1 bits;  conditional E-value: 4.7
     APAF1_C  27 ddlywysy.leyHlak.anlvee 47 
                 + l++y y l +Hl++ a++ +e
  KOO24680.1 581 EGLFLYAYmLSQHLESeAKKGQE 603
                 44555655268899852555555 PP

  == domain 2  score: 22.5 bits;  conditional E-value: 5.9e-08
     APAF1_C  52 lldldwieakvkltgpsslledyvkyrkileendeeeledfeeflsvnahlleekpfpdiiQlalsqpessevyqqAkk 130
                  +dl  ++ +v   ++ss+ +dy + r++ +  +     ++ +f+ +   +l++++   ++Qlal qp  s v+ +A +
  KOO24680.1 783 ATDLALLRERVDRGLLSSVAKDYLELRRV-DGVNLTDATEMRQFVGKYMDVLQRDKGAAVMQLALQQPDASAVFREAAS 860
                 589***********************986.55788889999**********************************9975 PP

>> Frtz  WD repeat-containing and planar cell polarity effector protein Fritz
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.1   0.0     0.015        23     261     327 ..     984    1053 ..     980    1059 .. 0.72
   2 !    5.9   0.0    0.0022       3.2     262     327 ..    1120    1188 ..    1115    1205 .. 0.75
   3 !    5.1   0.0     0.004         6     262     327 ..    1163    1231 ..    1147    1246 .. 0.73
   4 !    5.2   0.0    0.0036       5.3     262     327 ..    1206    1274 ..    1198    1280 .. 0.73

  Alignments for each domain:
  == domain 1  score: 3.1 bits;  conditional E-value: 0.015
        Frtz  261 qvislafnpdedkLllGceDssviLydeerk..itklvkaevv.PsliswhpdsaillvasergelqifD 327 
                  ++ s+af+pd  k++ G+ D+++ ++d  +   + + ++a+ +  + +++ pd++ ++ +s+   ++++D
  KOO24680.1  984 NISSVAFSPDGTKIVSGSYDKTIKVWDLGKLelLSEETNAHSRdINSVAFSPDGTNIVSGSDDKTIKVWD 1053
                  57899********************998653112222333322135677888888888888888888877 PP

  == domain 2  score: 5.9 bits;  conditional E-value: 0.0022
        Frtz  262 vislafnpdedkLllGceDssviLydeerkitklvkaevvPsl...iswhpdsaillvasergelqifD 327 
                  + s+af+pd  k++ G++D+++ ++d+++   +  k++   +    +++ pd++ ++ +s+   ++++D
  KOO24680.1 1120 IWSVAFSPDGTKIVSGSRDKTIKVWDSDKLELLSEKTNAHSDWirsVAFSPDGTKIVSGSDDKTIKVWD 1188
                  779999****************99999875555556666665511156788999999999999999988 PP

  == domain 3  score: 5.1 bits;  conditional E-value: 0.004
        Frtz  262 vislafnpdedkLllGceDssviLydeerkitklvkaevvPsli...swhpdsaillvasergelqifD 327 
                  + s+af+pd  k++ G+ D+++ ++d+++   +  k++   +li   ++ pd++ ++ +s    ++++D
  KOO24680.1 1163 IRSVAFSPDGTKIVSGSDDKTIKVWDSDKLELLSEKTNAHSHLIssvAFSPDGTKIVSGSWDQTIKVWD 1231
                  557889999999999999999999988765444446666555541115677777777777777777776 PP

  == domain 4  score: 5.2 bits;  conditional E-value: 0.0036
        Frtz  262 vislafnpdedkLllGceDssviLydeerkitklvkaevvPsl...iswhpdsaillvasergelqifD 327 
                  + s+af+pd  k++ G+ D+++ ++d+++   +  k++   ++   +++ pd++ ++ +s    ++++D
  KOO24680.1 1206 ISSVAFSPDGTKIVSGSWDQTIKVWDSDKLELLSEKTNAHSDTirsVAFSPDGTKIVSGSTDKTIKVWD 1274
                  567899999999999999999999998865444445555554411155778888888888888888777 PP

>> Nbas_N  Neuroblastoma-amplified sequence, N terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.9   0.0    0.0045       6.8     224     264 ..     977    1017 ..     959    1027 .. 0.84
   2 !    4.8   0.1    0.0099        15     219     263 ..    1106    1151 ..    1022    1161 .. 0.69
   3 ?    1.2   0.1      0.12   1.8e+02     219     263 ..    1149    1194 ..    1133    1209 .. 0.76
   4 ?    2.1   0.1     0.069     1e+02     217     262 ..    1190    1236 ..    1155    1245 .. 0.63
   5 ?    4.4   0.1     0.013        19     219     264 ..    1235    1281 ..    1221    1293 .. 0.80

  Alignments for each domain:
  == domain 1  score: 5.9 bits;  conditional E-value: 0.0045
      Nbas_N  224 rkaeekdgvfkmslspdgtllavihfsgklsiwdipslkqr 264 
                  +++   d +  +++spdgt++    +   + +wd+  l++ 
  KOO24680.1  977 KTNAHSDNISSVAFSPDGTKIVSGSYDKTIKVWDLGKLELL 1017
                  4567889***************************9988765 PP

  == domain 2  score: 4.8 bits;  conditional E-value: 0.0099
      Nbas_N  219 lklys.rkaeekdgvfkmslspdgtllavihfsgklsiwdipslkq 263 
                  l l s +++   d ++ +++spdgt++        + +wd   l++
  KOO24680.1 1106 LGLLSeKTNAHSDTIWSVAFSPDGTKIVSGSRDKTIKVWDSDKLEL 1151
                  445551456789**************99999999999999877765 PP

  == domain 3  score: 1.2 bits;  conditional E-value: 0.12
      Nbas_N  219 lklysrk.aeekdgvfkmslspdgtllavihfsgklsiwdipslkq 263 
                  l+l s k +   d +  +++spdgt++        + +wd   l++
  KOO24680.1 1149 LELLSEKtNAHSDWIRSVAFSPDGTKIVSGSDDKTIKVWDSDKLEL 1194
                  5666654156778999999******999988888999998777665 PP

  == domain 4  score: 2.1 bits;  conditional E-value: 0.069
      Nbas_N  217 lslklysrkae.ekdgvfkmslspdgtllavihfsgklsiwdipslk 262 
                   +l+l s k++     +  +++spdgt++    +   + +wd   l+
  KOO24680.1 1190 DKLELLSEKTNaHSHLISSVAFSPDGTKIVSGSWDQTIKVWDSDKLE 1236
                  34455554444044456678889999999888888888888876665 PP

  == domain 5  score: 4.4 bits;  conditional E-value: 0.013
      Nbas_N  219 lklysr.kaeekdgvfkmslspdgtllavihfsgklsiwdipslkqr 264 
                  l+l s  ++   d +  +++spdgt++        + +wd  s+++ 
  KOO24680.1 1235 LELLSEkTNAHSDTIRSVAFSPDGTKIVSGSTDKTIKVWDSDSFNLL 1281
                  55666415667899999************9999*******9999764 PP

>> WD40_like  WD40-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.1       1.8   2.7e+03     117     153 ..     886     922 ..     879     934 .. 0.81
   2 ?    0.0   0.0      0.29   4.3e+02       2      39 ..     984    1021 ..     983    1034 .. 0.86
   3 ?   -0.8   0.0       0.5   7.5e+02       2      31 ..    1027    1056 ..    1026    1081 .. 0.77
   4 ?    6.1   0.0     0.004       5.9       3     110 ..    1120    1233 ..    1118    1280 .. 0.58

  Alignments for each domain:
  == domain 1  score: -2.6 bits;  conditional E-value: 1.8
   WD40_like 117 llgqsseIkeikiennkiysLsesafivfdlfsqnie 153
                 +l+++s + ++ +   +i s s +   v+d++sq++ 
  KOO24680.1 886 TLSHKSVVSSVAVGYTRIVSGSGNSIFVYDAESQELI 922
                 6789999999999999999999999999999998764 PP

  == domain 2  score: 0.0 bits;  conditional E-value: 0.29
   WD40_like    2 eiYsidiskkgslilyGgkddkctvlkleslesvsive 39  
                  +i s+ +s++g+ i+ G+ d++++v +l  le+ s ++
  KOO24680.1  984 NISSVAFSPDGTKIVSGSYDKTIKVWDLGKLELLSEET 1021
                  57799**********************99988877655 PP

  == domain 3  score: -0.8 bits;  conditional E-value: 0.5
   WD40_like    2 eiYsidiskkgslilyGgkddkctvlkles 31  
                  +i s+ +s++g+ i+ G++d++++v +  +
  KOO24680.1 1027 DINSVAFSPDGTNIVSGSDDKTIKVWDAIN 1056
                  57899******************9988655 PP

  == domain 4  score: 6.1 bits;  conditional E-value: 0.004
   WD40_like    3 iYsidiskkgslilyGgkddkctvlkleslesvsives.fedSvifvkllddd.lilvvtlDGtillsllenee.evenekieed...istvkvi.. 91  
                  i+s+ +s++g+ i+ G++d++++v + + le+ s  ++  +d +  v +  d  +i+ ++ D ti  ++   ++ e  +ek +     is v     
  KOO24680.1 1120 IWSVAFSPDGTKIVSGSRDKTIKVWDSDKLELLSEKTNaHSDWIRSVAFSPDGtKIVSGSDDKTI--KVWDSDKlELLSEKTNAHshlISSVAFSpd 1214
                  78889999999999999999999999888888776544156666666665554255555666666..444444443333333332122555554311 PP

   WD40_like   92 ddklliGtnkGsiyvfskd 110 
                  + k++ G+   +i v++ d
  KOO24680.1 1215 GTKIVSGSWDQTIKVWDSD 1233
                  3466666666666666655 PP

>> WD40_3  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.6   0.0      0.19   2.9e+02      28      57 .]     908     938 ..     896     938 .. 0.84
   2 ?    1.1   0.0      0.26   3.9e+02       6      23 ..     981     998 ..     979     999 .. 0.94
   3 ?   -2.5   0.0       3.5   5.2e+03       6      23 ..    1024    1041 ..    1023    1055 .. 0.86
   4 ?   -1.2   0.0       1.4   2.1e+03       6      23 ..    1116    1133 ..    1115    1134 .. 0.93
   5 ?    0.6   0.0      0.38   5.7e+02       6      23 ..    1159    1176 ..    1157    1184 .. 0.90
   6 ?   -0.6   0.0      0.91   1.4e+03       6      23 ..    1202    1219 ..    1201    1220 .. 0.93
   7 ?    1.7   0.0      0.17   2.5e+02       6      23 ..    1245    1262 ..    1243    1266 .. 0.94

  Alignments for each domain:
  == domain 1  score: 1.6 bits;  conditional E-value: 0.19
      WD40_3  28 kgdgfvynPvseell.eipdfpstvkgvLWD 57 
                  ++ fvy + s+el+ ei+++++ ++  +WD
  KOO24680.1 908 GNSIFVYDAESQELIeEIEGTSEVMSVAIWD 938
                 5789*******99883589999999999998 PP

  == domain 2  score: 1.1 bits;  conditional E-value: 0.26
      WD40_3   6 HsvgIkklfpnpsGtrlv 23 
                 Hs++I ++   p+Gt++v
  KOO24680.1 981 HSDNISSVAFSPDGTKIV 998
                 9**************998 PP

  == domain 3  score: -2.5 bits;  conditional E-value: 3.5
      WD40_3    6 HsvgIkklfpnpsGtrlv 23  
                  Hs  I ++   p+Gt +v
  KOO24680.1 1024 HSRDINSVAFSPDGTNIV 1041
                  899999*********998 PP

  == domain 4  score: -1.2 bits;  conditional E-value: 1.4
      WD40_3    6 HsvgIkklfpnpsGtrlv 23  
                  Hs+ I ++   p+Gt++v
  KOO24680.1 1116 HSDTIWSVAFSPDGTKIV 1133
                  99*************998 PP

  == domain 5  score: 0.6 bits;  conditional E-value: 0.38
      WD40_3    6 HsvgIkklfpnpsGtrlv 23  
                  Hs+ I+++   p+Gt++v
  KOO24680.1 1159 HSDWIRSVAFSPDGTKIV 1176
                  9999************98 PP

  == domain 6  score: -0.6 bits;  conditional E-value: 0.91
      WD40_3    6 HsvgIkklfpnpsGtrlv 23  
                  Hs+ I ++   p+Gt++v
  KOO24680.1 1202 HSHLISSVAFSPDGTKIV 1219
                  99*************998 PP

  == domain 7  score: 1.7 bits;  conditional E-value: 0.17
      WD40_3    6 HsvgIkklfpnpsGtrlv 23  
                  Hs+ I+++   p+Gt++v
  KOO24680.1 1245 HSDTIRSVAFSPDGTKIV 1262
                  9***************98 PP

>> KAP_NTPase  KAP family P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   0.0    0.0003      0.44       9      88 ..     112     187 ..     107     206 .. 0.84
   2 ?    0.1   0.0      0.26   3.8e+02     171     197 ..     220     246 ..     201     275 .. 0.86

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 0.0003
  KAP_NTPase   9 adilseptlatpivvgLygkWGsGKssllnkledelkefakpvrflfaefnawsfkggddavaellaaLadaleeeygql 88 
                  + l++p  a p  + L g  G+GKs l ++l d   ++  +v ++f++ +  +++    ++++l a La+ l+  +++l
  KOO24680.1 112 LKWLNDP--ASPQLFWLMGGGGTGKSVLTAELLDRVINR--TVAWHFCRHDNPAQSAPGPLLRSLAAMLAHRLQGYKEKL 187
                 5667777..7899999***********************..********9998888878888888888888777666655 PP

  == domain 2  score: 0.1 bits;  conditional E-value: 0.26
  KAP_NTPase 171 lqkrlVvviDdLDrceteevlqlleav 197
                  +++l++++D+LD + +e  + ll ++
  KOO24680.1 220 PERPLLIILDALDELPKESQKPLLAVI 246
                 5789**********9999888888777 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1346 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       590  (0.0329076); expected 358.6 (0.02)
Passed bias filter:                      503  (0.0280551); expected 358.6 (0.02)
Passed Vit filter:                        60  (0.00334653); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.92u 0.31s 00:00:01.23 Elapsed: 00:00:00.49
# Mc/sec: 8268.95
//
Query:       KOO24681.1  [L=386]
Description: NHL repeat containing protein, partial [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    5.7e-25   86.1   0.4    2.4e-06   27.3   0.0    5.4  5  NHL            NHL repeat
    4.5e-09   36.3   0.1     0.0005   19.7   0.1    3.9  3  SGL            SMP-30/Gluconolactonase/LRE-like region
    0.00035   20.6   0.0        1.8    8.5   0.0    3.5  4  Phytase-like   Esterase-like activity of phytase
  ------ inclusion threshold ------
       0.71   10.5   8.1        1.3    9.6   1.0    2.8  2  Ribosomal_60s  60s Acidic ribosomal protein


Domain annotation for each model (and alignments):
>> NHL  NHL repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.0   3.5e-06     0.016       1      26 [.      75     100 ..      75     102 .. 0.94
   2 !    9.3   0.0   0.00027       1.2       3      26 ..     151     174 ..     149     176 .. 0.92
   3 !   27.3   0.0   5.3e-10   2.4e-06       1      26 [.     203     228 ..     203     229 .. 0.95
   4 !   24.5   0.0   4.1e-09   1.8e-05       3      27 ..     259     283 ..     257     284 .. 0.95
   5 ?    3.4   0.0      0.02        90       1      26 [.     311     335 ..     311     337 .. 0.84

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 3.5e-06
                 BSSEEEEEEETTTEEEEEECCCTEEE CS
         NHL   1 fnyPhGvavdsnGdiyVaDsenhrvq 26 
                 fn P+G+ +  +G ++V+Ds n r++
  KOO24681.1  75 FNGPTGLGIAADGSLLVSDSDNRRLR 100
                 99********************9987 PP

  == domain 2  score: 9.3 bits;  conditional E-value: 0.00027
                 SEEEEEEETTTEEEEEECCCTEEE CS
         NHL   3 yPhGvavdsnGdiyVaDsenhrvq 26 
                 +P+G++ ++ G  +++Ds++h+v+
  KOO24681.1 151 DPQGIVSTKEGVTFITDSGSHTVR 174
                 8*********************97 PP

  == domain 3  score: 27.3 bits;  conditional E-value: 5.3e-10
                 BSSEEEEEEETTTEEEEEECCCTEEE CS
         NHL   1 fnyPhGvavdsnGdiyVaDsenhrvq 26 
                 f +P G+++ s+G +yVaDs+nhr++
  KOO24681.1 203 FDHPYGLTIGSDGTLYVADSGNHRIR 228
                 78999*******************96 PP

  == domain 4  score: 24.5 bits;  conditional E-value: 4.1e-09
                 SEEEEEEETTTEEEEEECCCTEEEE CS
         NHL   3 yPhGvavdsnGdiyVaDsenhrvqv 27 
                 yP G+a+ds G +yV+D+ nhr+++
  KOO24681.1 259 YPVGIAMDSEGCLYVTDRANHRIRK 283
                 8**********************86 PP

  == domain 5  score: 3.4 bits;  conditional E-value: 0.02
                 BSSEEEEEEETTTEEEEEECCCTEEE CS
         NHL   1 fnyPhGvavdsnGdiyVaDsenhrvq 26 
                 f++P+ +a+ +   iyV+D+ ++r++
  KOO24681.1 311 FSFPNAIAL-DRAAIYVSDTFTFRIR 335
                 889999999.6999*****9777776 PP

>> SGL  SMP-30/Gluconolactonase/LRE-like region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.1   0.0    0.0016         7     136     216 ..      78     182 ..      73     185 .. 0.74
   2 !   19.7   0.1   1.1e-07    0.0005     138     216 ..     208     290 ..     198     295 .. 0.79
   3 !    5.0   0.0    0.0036        16     132     169 ..     310     345 ..     304     348 .. 0.83

  Alignments for each domain:
  == domain 1  score: 6.1 bits;  conditional E-value: 0.0016
         SGL 136 pNGlawspdgktlYlaDsltrkiwayd..vdaeggklsnrrvfadlkkge.......................gepDGlavDaeGnvwvAvwgggkvvr 209
                 p Gl++ +dg+ l   Ds +r++ +++  + +++    +   +a +  ++                         p G++ ++eG  +++  g+++v+r
  KOO24681.1  78 PTGLGIAADGSLLV-SDSDNRRLRKVSvmYVKPEAVPAEGASWASFVSYGavstivgngdpgiregrgnisalVDPQGIVSTKEGVTFITDSGSHTVRR 175
                 67788888887665.78887776665511344555566666677777777777888888888888887787664499********************** PP

         SGL 210 fdpdGkl 216
                 ++p+G++
  KOO24681.1 176 VAPNGEI 182
                 *****97 PP

  == domain 2  score: 19.7 bits;  conditional E-value: 1.1e-07
         SGL 138 GlawspdgktlYlaDsltrkiwaydvdaeggklsnrrvfadlkkge.......gepDGlavDaeGnvwvAvwgggkvvrfdpdGkl 216
                 Gl + +dg tlY+aDs +++i  ++ + + ++l        + k++        +p G+a+D+eG+++v+  +++++++++++G++
  KOO24681.1 208 GLTIGSDG-TLYVADSGNHRIRTVSQQGDVKTLAGTGAP--GHKDGsggaaqfFYPVGIAMDSEGCLYVTDRANHRIRKVTTKGTV 290
                 66666665.79**********999888777766655533..22222356688878*****************************97 PP

  == domain 3  score: 5.0 bits;  conditional E-value: 0.0036
         SGL 132 dltipNGlawspdgktlYlaDsltrkiwaydvdaeggk 169
                  +++pN++a+  d   +Y+ D+ t++i ++  d ++ +
  KOO24681.1 310 AFSFPNAIAL--DRAAIYVSDTFTFRIRRILKDGQTRT 345
                 5789999998..6789***********99988777765 PP

>> Phytase-like  Esterase-like activity of phytase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.2   0.0    0.0019       8.7      66     100 ..     148     182 ..      80     187 .. 0.78
   2 !    8.5   0.0   0.00039       1.8      72     101 ..     208     237 ..     187     256 .. 0.86
   3 ?    1.1   0.0      0.07   3.1e+02      72     100 ..     262     290 ..     258     302 .. 0.92
   4 ?   -2.5   0.0      0.86   3.9e+03      73     101 ..     317     344 ..     314     362 .. 0.77

  Alignments for each domain:
  == domain 1  score: 6.2 bits;  conditional E-value: 0.0019
  Phytase-like  66 kglDpEgiavapdgtfwvssEggpfilefdadGkl 100
                     +Dp gi+ +++g  ++++ g + ++++ ++G++
    KOO24681.1 148 ALVDPQGIVSTKEGVTFITDSGSHTVRRVAPNGEI 182
                   456******************************97 PP

  == domain 2  score: 8.5 bits;  conditional E-value: 0.00039
  Phytase-like  72 giavapdgtfwvssEggpfilefdadGkll 101
                   g+++ +dgt++v++ g+++i+ ++ +G ++
    KOO24681.1 208 GLTIGSDGTLYVADSGNHRIRTVSQQGDVK 237
                   89999*********************9986 PP

  == domain 3  score: 1.1 bits;  conditional E-value: 0.07
  Phytase-like  72 giavapdgtfwvssEggpfilefdadGkl 100
                   gia++++g ++v++  +++i++++ +G++
    KOO24681.1 262 GIAMDSEGCLYVTDRANHRIRKVTTKGTV 290
                   89999*******************99987 PP

  == domain 4  score: -2.5 bits;  conditional E-value: 0.86
  Phytase-like  73 iavapdgtfwvssEggpfilefdadGkll 101
                   ia+ ++  ++vs+ +  +i+++ +dG+ +
    KOO24681.1 317 IAL-DRAAIYVSDTFTFRIRRILKDGQTR 344
                   666.7788999999999999999999883 PP

>> Ribosomal_60s  60s Acidic ribosomal protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.0   1.0     0.017        74      54      84 ..       5      35 ..       1      37 [. 0.43
   2 ?    9.6   1.0    0.0003       1.3      38      73 ..     337     381 ..     320     386 .] 0.51

  Alignments for each domain:
  == domain 1  score: 4.0 bits;  conditional E-value: 0.017
                   XXXXXXXXXXXXXXXXXXXXXX.XX--SS-- CS
  Ribosomal_60s 54 aaaaaaaaaaaaaeekkkeeeeeEeedddmG 84
                    ++++a+ + a+a+e  ++ ++ E+e+   G
     KOO24681.1  5 LPSEGAGPSRAPAAEPRAKRPKVEHEEASWG 35
                   3444444444444444444443355555555 PP

  == domain 2  score: 9.6 bits;  conditional E-value: 0.0003
                    XXXXXXXXXX.........XXXXXXXXXXXXXXXXXXXXXXXXXX CS
  Ribosomal_60s  38 llangaakla.........aaaaaaaaaaaaaaaaaaaeekkkee 73 
                    +l++g++  +         +++aa+aa+aa+   ++a ++ k  +
     KOO24681.1 337 ILKDGQTRTLaigfpppaaPVGAAPAASAAPPTTKPAPAAPKSAP 381
                    555555554456665555533333333333333333333333322 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (386 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       341  (0.0190195); expected 358.6 (0.02)
Passed bias filter:                      231  (0.0128842); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.50u 0.27s 00:00:00.77 Elapsed: 00:00:00.44
# Mc/sec: 2643.03
//
Query:       KOO24682.1  [L=1230]
Description: trehalose-phosphatase synthase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.3e-96  323.3   0.0    7.7e-58  196.3   0.0    3.2  3  Glyco_transf_20  Glycosyltransferase family 20
    7.2e-32  110.4   0.0    1.1e-31  109.8   0.0    1.3  1  Trehalose_PPase  Trehalose-phosphatase


Domain annotation for each model (and alignments):
>> Glyco_transf_20  Glycosyltransferase family 20
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.4   0.0     7e-11   6.3e-07       2     113 ..      14     129 ..      13     139 .. 0.69
   2 !  196.3   0.0   8.6e-62   7.7e-58     114     305 ..     175     369 ..     167     373 .. 0.94
   3 !   94.6   0.0   5.9e-31   5.3e-27     323     472 ..     412     557 ..     396     559 .. 0.90

  Alignments for each domain:
  == domain 1  score: 28.4 bits;  conditional E-value: 7e-11
                      -EEEEEEE-SECEEE-S.SCG..EEECCGSSH...HHHHCCCHHCC...C-EEEEEEECCES-CCC..HCCCCHHHCC.CCCEEEEEE-HHHHH CS
  Glyco_transf_20   2 klvvvsnrlplklereseeekeeyelkkssgg...lvsalkglkee...tevvwvgwlgvevdeseeakekvskelee.kfsvvpvflsdekve 88 
                      ++vvvs+ lp++l +  +++ ++  ++++ +     +s + +l  +   t v++vg++++ v+ +e  +++v+  +e+  + +v+v++++  + 
       KOO24682.1  14 RVVVVSHSLPITLTKCASTGGWTAAWDREIARpetAISRYVSLGVRsldTPVIFVGSPNIYVPVEE--RAAVEAAIESaGIAAVVVYVDKVVAS 105
                      68999******97766656665555554433211123322222222344888**************..777776665515889999******** PP

                      HHCCCHHHHCHHHHHTT-GG....G CS
  Glyco_transf_20  89 eyyngfsksvLWpllHYklpdssee 113
                      ++y+g++ks+LWp+lH  ++   ++
       KOO24682.1 106 RFYQGYCKSTLWPILHNVID-VYNS 129
                      ****************6665.4444 PP

  == domain 2  score: 196.3 bits;  conditional E-value: 8.6e-62
                      ----HHHHHHHHHHHHHHHHHHHCC--TT-EEEEESGGGTTHHHHH.HHCCTTSEEEEEE-S----HHHHTTSTTHHHHHHHHTTSSEEEESSH CS
  Glyco_transf_20 114 kefersawdaYvkvnklFAdkiveeikdgdliwvhDYhLmllPell.RkkledakigfflHiPFPsseifriLpvreeilegllgadliGFhte 206
                      +e  ++ w++Y kvn++ A ++ve+ ++gdliw++ YhLmllP+ l Rk  + a+igf  H PFPsseifr+L +ree+l+g+l ad iGFh +
       KOO24682.1 175 TEAAETCWQDYCKVNRIVAAAVVENFQEGDLIWIQHYHLMLLPSELaRKLRNSANIGFCFHQPFPSSEIFRCLTNREELLRGMLCADHIGFHLF 268
                      5667899************************************9883555666***************************************** PP

                      HHHHHHHHHHHHHSSEEEECTTE...EEEETTEEEEEEE------HHHHHHHCCSCHHHHHHHHHHHHT.TTSEEEEEEEEC-GGG-HHHHHHH CS
  Glyco_transf_20 207 dyarhFlsccsrllgleveskrg...gveykgrkvsvkalpigidverlesalkkesvsekvkelkerfenkkklilgvDrlDyikGvkqklla 297
                      + a++F++cc+rll  + eskrg   +++y+gr++ +  ++ gid++ l sal +e+v e+v+ l+ + +    +i + D l+ +kGv+ kl a
       KOO24682.1 269 EWAQNFIACCRRLLSCSSESKRGgglTLHYEGRQIALTCTHMGIDPPLLLSALPSEAVGERVAALRAQHGT-HTVICSIDLLEGLKGVPLKLPA 361
                      *********************9998999*****************************************88.5********************* PP

                      HHHHHHH- CS
  Glyco_transf_20 298 ferfLeey 305
                      fe++L+ +
       KOO24682.1 362 FEHLLHSQ 369
                      *****875 PP

  == domain 3  score: 94.6 bits;  conditional E-value: 5.9e-31
                      TTSHHHHHHHHHHHHHHHHHHHHH.-BTTB-SEEEEES---HHHHHHHHHH-SEEEE--SSBSS-CHHHHHHHCSTTT--EEEEETTBGGGGT- CS
  Glyco_transf_20 323 edveeyqelekeveelvgrINgef.gtldytPvvylersldfeeliallaaadvllvtslRdGmnlvakeyvvcqqekkgvLiLSeFaGaaqsL 415
                       + e+  +++++v  lv rIN++f g + ++        ++  e +all++++vllvts+R+G+nl+++ey  +++ + g+L++SeF   a++L
       KOO24682.1 412 ARPEDHARVTADVRALVSRINSRFpGAVHFECC----AAMPLYERLALLRVTEVLLVTSVREGLNLLPLEYLLTNEANPGSLVVSEFCSLARVL 501
                      4455668999**************666666655....4578899************************************************** PP

                      TTTSEEE-TT-HHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHT-HHHHHHHHHHHH CS
  Glyco_transf_20 416 kdaailvNPwdieevaeaikeaLkmseeerkkrekkllkqvskhdvqsWaesflsel 472
                      + +a+l NPw + ++++ai++aL+++   r+ r  + ++   +++++ Wa+ ++ ++
       KOO24682.1 502 S-GAVLCNPWSVRKMSAAIQRALSLDGPTRAARLARDIDWCRSNTAAAWARRMVADV 557
                      *.88************************************************99886 PP

>> Trehalose_PPase  Trehalose-phosphatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  109.8   0.0   1.3e-35   1.1e-31      13     232 ..     715     946 ..     709     947 .. 0.95

  Alignments for each domain:
  == domain 1  score: 109.8 bits;  conditional E-value: 1.3e-35
                      SSGGG--B-TTHHHHHHHHHTTS-..EEEE-SS-HHH.HHHHH---SSEEEEGGGTEEE-TT.--EEE-............HHHHTTHHHHHHH CS
  Trehalose_PPase  13 edpdaavpssellslLkkLasdpknvvaivSGrslke.eellvkvpelglaaeHGaeirsps.gedwen............qaevedlewlkev 92 
                      ++p a +ps+ ++++L+ +++d++n+v ++S + ++e ++ +++vp+  l a +G+++ + +  + we+            q+ v+d  w++ +
       KOO24682.1 715 KRPRAPPPSATVRNALEVVCADSRNTVLVMSTSPREElASSFGSVPGCSLGADNGMYVAWSGlHGRWEMaggvswelseamQQGVTDEGWRELA 808
                      6688999****************************************************9973568888***********9999********** PP

                      HHHHHHHHTTSTT-EEEEETTEEEEE-TT--TT....THHHHHHHHHHHHHHH.--EEEE-SSEEEEE-S---HHHHHHHHHHTS--------E CS
  Trehalose_PPase  93 keileektertpGsyiEekkfalsvHyrnadde..elqakelaehlesvltdkpdlevtqgkkvvevrpqgvsKGkaverlleslgsadseddf 184
                        i ++++ert G++ E     +++H+++ad+e  ++qakel +hl +vl+d   +ev      + v p+gv KG+  ++ l++ +     +df
       KOO24682.1 809 MSIVKTYAERTCGAFAECGANYVAFHFQQADPEfgRMQAKELHNHLTEVLRDT-AVEVVSKPFRLHVGPRGVDKGSLMRQALNAVR-----PDF 896
                      *****************************************************.**********************9999988887.....78* PP

                      EEEEE-SSTTHHHHTTS-TT.....-EEEEE--TTS---EES-SEEESSH CS
  Trehalose_PPase 185 vlciGDdrtDedmFsvlrktk..esgvsievsavevgskpskakysldsk 232
                      vl++GDd tDe +Fs+l +    + ++    +a++vg+kps a++++d++
       KOO24682.1 897 VLVVGDDSTDEPAFSELAEFRsrHAHLANHCYACTVGRKPSRATFFVDDQ 946
                      ******************99999999********************9985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1230 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       573  (0.0319594); expected 358.6 (0.02)
Passed bias filter:                      371  (0.0206927); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.78u 0.28s 00:00:01.06 Elapsed: 00:00:00.44
# Mc/sec: 8358.69
//
Query:       KOO24683.1  [L=323]
Description: hemolysin-III channel protein Izh2 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    7.9e-19   68.3  12.4    9.7e-19   68.0  12.4    1.1  1  HlyIII    Haemolysin-III related
  ------ inclusion threshold ------
      0.022   14.3   1.4      0.034   13.6   1.4    1.2  1  DUF1129   Protein of unknown function (DUF1129)


Domain annotation for each model (and alignments):
>> HlyIII  Haemolysin-III related
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   68.0  12.4   1.1e-22   9.7e-19       2     222 ..      76     293 ..      75     295 .. 0.85

  Alignments for each domain:
  == domain 1  score: 68.0 bits;  conditional E-value: 1.1e-22
      HlyIII   2 slhnEtlniwtHllgailfivlailllslaevkensklakvvvlvfllgallcllcSalyHtlsihseeklrkffaklDysgIslliagsylplilyal 100
                 + h Et+niw+Hl+g +l ++ ++ ++     +       +v+ v  +  ++c ++S+++H+ ++     + + + +lDy+  +l  +     l+ + +
  KOO24683.1  76 RGHSETVNIWSHLAGSLLLLPCLFGDYYAHWPWL-----STVLRVHAAIGICCGFASVIFHISESFPL-DVYNRCIQLDYAFAFLATVSHSALLAAVFF 168
                 6699***************888888888776665.....5888888888999**********999888.9***************************** PP

      HlyIII 101 akapkagllylslilalgvlgiisklvplfsr.........pearplrav.lfillgllgvipllhlllvltqlgeaaelalvllvlggvlylvGavfY 189
                  ++p+    +l+l+l++ vlg+ + +                +   +r++ ++++  ll+v   +h+ll+ +++g       +++++ ++++ v+a+ +
  KOO24683.1 169 RETPQVAVPLLALLLLISVLGVRLFVAQTD-AdatntqrhaDRGSTIRVAgIMLAPVLLAVPICAHVLLFDPDFG-------PVVLSWMLSFAVAALAW 259
                 *********************988777763.34778887765566666653666667777777788777777666.......89999999********* PP

      HlyIII 190 alrvPErlk.pgkfdivghsHqiFHvfvvlgalf 222
                  +++PErl+ pg fd+vg+sH++ Hv+v++ +lf
  KOO24683.1 260 LFKLPERLFpPGTFDYVGNSHNVMHVMVLVTFLF 293
                 *******883577****************98876 PP

>> DUF1129  Protein of unknown function (DUF1129)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   1.4   3.8e-06     0.034      80     192 ..     145     260 ..     127     263 .. 0.84

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 3.8e-06
     DUF1129  80 malDnsLlllalfallfgilalfskkkqtasiGlitlllvalvgGlamvlvyrlltre..kkkkkrpplwkrllilllllvvwlvlftlvallpaviNp 176
                 + lD ++ +la ++    + a+f +++ + ++ l++lll+  v G+ +++ ++  + +  +++ +r ++++++ i+l+ +++ + +++ v l+ + + p
  KOO24683.1 145 IQLDYAFAFLATVSHSALLAAVFFRETPQVAVPLLALLLLISVLGVRLFVAQTDADATntQRHADRGSTIRVAGIMLAPVLLAVPICAHVLLFDPDFGP 243
                 56999999999998877777888887888889****9999999999888877766655569999*****************999999999999999998 PP

     DUF1129 177 v.Lpplvliiigviafv 192
                 v L+++ +++++++a  
  KOO24683.1 244 VvLSWMLSFAVAALAWL 260
                 63778888999999865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (323 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       604  (0.0336884); expected 358.6 (0.02)
Passed bias filter:                      373  (0.0208043); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.48u 0.26s 00:00:00.74 Elapsed: 00:00:00.42
# Mc/sec: 2313.30
//
Query:       KOO24684.1  [L=1677]
Description: class vii unconventional myosin [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
   7.1e-151  503.7   0.0    4.3e-68  230.1   0.0    3.0  3  Myosin_head    Myosin head (motor domain)
    2.7e-10   40.2   5.0    1.7e-07   31.2   0.5    2.7  2  WW             WW domain
     0.0013   18.3  18.5     0.0053   16.4   1.6    4.9  4  IQ             IQ calmodulin-binding motif
     0.0058   17.0   0.1      0.027   14.9   0.1    2.2  2  AAA_16         AAA ATPase domain
  ------ inclusion threshold ------
      0.053   13.8   0.1       0.33   11.2   0.1    2.3  2  AAA_22         AAA domain


Domain annotation for each model (and alignments):
>> Myosin_head  Myosin head (motor domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  230.1   0.0   1.2e-71   4.3e-68       2     205 ..      46     276 ..      45     281 .. 0.93
   2 !  200.6   0.0   1.1e-62   3.8e-59     225     511 ..     341     635 ..     304     639 .. 0.88
   3 !   71.3   0.0   1.4e-23   4.9e-20     545     677 .]     636     767 ..     629     767 .. 0.89

  Alignments for each domain:
  == domain 1  score: 230.1 bits;  conditional E-value: 1.2e-71
                  SBGCGSSS-SHHHHHHHHHHHHHTT--EEEETTEEEEE--SS--S.TSSHHHHHHHTTS-GGGSSSSHHHHHHHHHHHHHHHTSEEEEEEESSTTSSH CS
  Myosin_head   2 edlveLsllneasvlenlkkRykkdliYtysglvlvavnPykklk.iysedvikaykgkkreelpPHifaiadeayrslledkenqsilisGEsGAGK 98 
                   d+++L +l+e+sv++n   R+++d+iYt++g vl+avnPyk ++ +y e  ++a++  ++ e pPHi+a+ + ayr+ ++   nq+++isGEsGAGK
   KOO24684.1  46 SDVTQLLTLTEESVMQNTMVRFSRDEIYTFVGSVLLAVNPYKVIPaLYGEAAMEAFQHVSMLEAPPHIYALMEGAYRKAVNGGGNQCLIISGESGAGK 143
                  799*********************************************************************************************** PP

                  HHHHHHHHHHHHHHSSSSSC....................TCTTHHHHHHHHHHHHHHHHHEEEESSETTEESSEEEEEEEEET.TSSEEEEEEEEEC CS
  Myosin_head  99 teatKkvlqylasvaeskek....................veeeeleekilqsnPilEafGnAktvrndnssRFGKfieiefda.kgkiagakietYL 175
                  te+tK+ l+yl      +++                    ++ ++l + ilq+nP++EafGnA t rn nssRFGK ++++ da +g + g+++etYL
   KOO24684.1 144 TESTKHALSYLVWRMRFATSvgatgasssssspdssdgtsASGARLTTSILQANPLMEAFGNACTSRNSNSSRFGKCVRLTLDAeRGYLLGGQVETYL 241
                  ***********9887777777889999************99999**************************************973699********** PP

                  E-GGGGT--.....-TT--SBHHHHHHHHCSTHHH CS
  Myosin_head 176 LEksRvvkq.....akeERnyHiFYqllagaseee 205
                  LEksRv        a++ERn+H FYql+ag++e +
   KOO24684.1 242 LEKSRVTSGmadhfASGERNFHAFYQLVAGVAEAQ 276
                  ******96522222689*************98765 PP

  == domain 2  score: 200.6 bits;  conditional E-value: 1.1e-62
                  SSSBTTS-HHHHHHHHHHHHHHHT--HHHHHHHHHHHHHHHHHCTSSEEEECTTSSEEESSHHHHHHHHHHHTS-HHHHHHHHHSEEEEETTEEEEEE CS
  Myosin_head 225 eltvdgiddseefketkkaldilglseeeqkeifrivaailhlGniefkkeakdeqavledeeklekaaellgvdaeelekalvkrriktgkevvska 322
                    ++ g+dd++ f++t+ al  lg s +e++++f+++aa+lhlGn ef+++a++ +   +   +++ aa+   + + +l+  l++r++k+g e++   
   KOO24684.1 341 AAKARGLDDAAAFRKTCAALCDLGCSRDEIRSLFSLLAALLHLGNGEFEDDATGIARPAPGLGAAALAAASRALRCPQLADLLLHRSLKVGGEMMRID 438
                  45669***********************************************99877778888899999999999*********************** PP

                  -BHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSS.........-S-SEEEEEEEEE-B---SSB-HHHHHHHHHHHHHHHHHHHHHCHHHHHHHH CS
  Myosin_head 323 lnveqaevardalakaiyerlFdwlverinkslekkk.........eekksfiGvLDiaGFEifeknsFEqlcinyvnEkLqqlFnelvlklEqeeYv 411
                  l  eqa++    + k +y   F w+++r+n++l++           ++   ++ vLDi+GFE f  nsFEqlcin++nEkL qlF ++++k+E    +
   KOO24684.1 439 LRAEQADNLLRGILKSLYTLGFGWILRRVNSVLRAGGaeptapsrdSAGVVVLDVLDIFGFENFASNSFEQLCINFANEKLHQLFLKTMFKAEEAVVA 536
                  *********************************986645555554344567889******************************************** PP

                  HTTSSGCGS-GGGCCHHHHHHHHSSSTSHHHHHHHHHTSTTS-HHHHHHHHHHHHTTSTTEEET.TSTTTTTEEEEEETTCEEEEE-TTHHHHHH--- CS
  Myosin_head 412 rEgiewkfidfgldnqaiidLiekkplGilslLdeecllpkatdetfleklvkafskhakfeks.rlkkgeakFiikHyAgkveYevegfleKnkDtl 508
                  rE ++   i++ +dnq ++ ++e+ p Gi+ +Ld  c++ +a+  +f+ +++  +++++ +  s + ++++ +F+++H+Ag+v+Y+ve+f +Kn +t+
   KOO24684.1 537 RERLTLPPIEY-CDNQRCLAMLEDAPRGIFHVLDTCCRV-HASAASFCLQVHAWHAECEFLVLSmNGTNEDRTFTVRHFAGDVCYHVEEFSSKNTETM 632
                  ***********.8********************987765.788999****9999988774444414479999************************99 PP

                  -HH CS
  Myosin_head 509 ned 511
                  +++
   KOO24684.1 633 ESQ 635
                  876 PP

  == domain 3  score: 71.3 bits;  conditional E-value: 1.4e-23
                  .CSSSECCCCCSBHHHHHHHHHHHHHHHHCTSEEEEEEEE-SSSS--TT---HHHHHHHHHHTTHHHHHHHHHHSSSEEEEHHHHHHHHGGGSTTSS- CS
  Myosin_head 545 kkkkkkkkkkfktvgskfkeslaeLmktlestnphfvRCikpnekkkakkldeslvleqlrclGvlegirirraGfpnRitfeefvqrYkllakkelk 642
                  ++++ +  ++ +++g++f +++++Lm++l + ++hfv C+kpn  ++++ l+ ++v+eql+ lG+le+++++  G+p Ri++e++++rY   +++   
   KOO24684.1 636 TRQRGEAGRMASSTGKRFLRDMGRLMASLLASSSHFVHCVKPNGMEQPELLSYEMVAEQLTSLGTLETVQLMGLGYPVRIKYEQLRRRYLPRLANIP- 732
                  23333344567899***************************************************************************88777764. PP

                  SS.SSSHHHHHHHHHHHTTS-GCGEEECSSEEEET CS
  Myosin_head 643 kllkedakkaveailkeleldkeeykiGktKiFfr 677
                    +  + k +ve+il+  ++   +yk+G t++F+r
   KOO24684.1 733 GAVLLSPKLFVEMILEVCDTPPGDYKLGVTRLFLR 767
                  5567999**************************98 PP

>> WW  WW domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.2   0.5   4.7e-11   1.7e-07       2      31 .]    1107    1135 ..    1106    1135 .. 0.97
   2 !   10.2   0.4   0.00017      0.62      16      31 .]    1150    1165 ..    1148    1165 .. 0.90

  Alignments for each domain:
  == domain 1  score: 31.2 bits;  conditional E-value: 4.7e-11
                  -TTEEEEE-TTTT-EEEEETTT--EESS-- CS
          WW    2 PpGWeeqwdpdsGrvYYyNheTgetqWekP 31  
                  P GW+  ++ d Gr+Y++N++T+ tqWe+P
  KOO24684.1 1107 PVGWRRFSSLD-GRPYFFNPNTNGTQWEPP 1135
                  88*********.*****************9 PP

  == domain 2  score: 10.2 bits;  conditional E-value: 0.00017
                  EEEEETTT--EESS-- CS
          WW   16 vYYyNheTgetqWekP 31  
                  +Y+y++ T++t+W  P
  KOO24684.1 1150 YYFYDPLTRRTSWIEP 1165
                  9************766 PP

>> IQ  IQ calmodulin-binding motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.9   2.2    0.0075        27       6      21 .]     825     840 ..     821     840 .. 0.86
   2 ?    0.3   0.1      0.24   8.5e+02       6      19 ..     848     861 ..     845     863 .. 0.87
   3 !   16.4   1.6   1.5e-06    0.0053       3      20 ..     871     888 ..     869     889 .. 0.93
   4 ?    4.2   0.0     0.013        45       2      12 ..     893     903 ..     892     904 .. 0.93

  Alignments for each domain:
  == domain 1  score: 4.9 bits;  conditional E-value: 0.0075
                 HHHHHHHHHHHHHHHH CS
          IQ   6 kIQaawRGylaRkryk 21 
                 + Q++ R++la +r+k
  KOO24684.1 825 IAQKYLRMWLALRRFK 840
                 56************97 PP

  == domain 2  score: 0.3 bits;  conditional E-value: 0.24
                 HHHHHHHHHHHHHH CS
          IQ   6 kIQaawRGylaRkr 19 
                 +IQ a+R +++R +
  KOO24684.1 848 TIQHAVRSHRVRLA 861
                 6999********76 PP

  == domain 3  score: 16.4 bits;  conditional E-value: 1.5e-06
                 HHHHHHHHHHHHHHHHHH CS
          IQ   3 aaikIQaawRGylaRkry 20 
                 aai++Q++ RG++a+++y
  KOO24684.1 871 AAIRLQKHLRGWVAMRQY 888
                 9****************9 PP

  == domain 4  score: 4.2 bits;  conditional E-value: 0.013
                 HHHHHHHHHHH CS
          IQ   2 kaaikIQaawR 12 
                 +aa +IQaa+R
  KOO24684.1 893 DAASTIQAAYR 903
                 79********9 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.1   7.5e-06     0.027      13      49 ..     118     155 ..     112     216 .. 0.83
   2 ?   -3.7   0.0       3.9   1.4e+04     103     137 ..     630     671 ..     615     673 .. 0.60

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 7.5e-06
      AAA_16  13 lsalervrsgrp.elvllsGesGvGKsslvrellrale 49 
                 + a++++  g++ +++++sGesG GK+   +++l +l 
  KOO24684.1 118 EGAYRKAVNGGGnQCLIISGESGAGKTESTKHALSYLV 155
                 7789977778777**************99999987665 PP

  == domain 2  score: -3.7 bits;  conditional E-value: 3.9
      AAA_16 103 eala.......avpelagaeasrllellkrll.allsrderpl 137
                 e+++       +++ +a++  +r+l+ + rl+ +ll++ ++ +
  KOO24684.1 630 ETMEsqtrqrgEAGRMASSTGKRFLRDMGRLMaSLLASSSH-F 671
                 44442222222333444444499999999999888877666.5 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.1   9.1e-05      0.33       4      28 ..     129     153 ..     125     212 .. 0.84
   2 ?   -2.1   0.0       1.2   4.1e+03      15      34 ..    1324    1343 ..    1322    1406 .. 0.75

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 9.1e-05
      AAA_22   4 tagilvvtGesGtGKTtllrrlleq 28 
                 + ++l++ GesG+GKT + +  l+ 
  KOO24684.1 129 GNQCLIISGESGAGKTESTKHALSY 153
                 579***************9987765 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 1.2
      AAA_22   15 GtGKTtllrrlleqldeeak 34  
                  GtG+T +++ l ++++  ++
  KOO24684.1 1324 GTGRTITIQDLEREYPPLKS 1343
                  99********9999875444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1677 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       523  (0.0291706); expected 358.6 (0.02)
Passed bias filter:                      426  (0.0237604); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.94u 0.28s 00:00:01.22 Elapsed: 00:00:00.43
# Mc/sec: 11617.31
//
Query:       KOO24685.1  [L=661]
Description: cell division protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    4.9e-31  108.5   0.1    1.5e-30  106.9   0.1    1.8  1  Tubulin        Tubulin/FtsZ family, GTPase domain
    0.00014   22.1   2.4    0.00039   20.7   0.0    2.8  3  FtsZ_C         FtsZ family, C-terminal domain
     0.0083   15.3   0.8       0.39    9.8   0.8    2.2  1  Tubulin_2      Tubulin like
  ------ inclusion threshold ------
      0.025   14.7   0.1      0.025   14.7   0.1    2.8  3  CO_deh_flav_C  CO dehydrogenase flavoprotein C-terminal domai


Domain annotation for each model (and alignments):
>> Tubulin  Tubulin/FtsZ family, GTPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  106.9   0.1   3.3e-34   1.5e-30       1     196 [.     244     447 ..     244     448 .. 0.82

  Alignments for each domain:
  == domain 1  score: 106.9 bits;  conditional E-value: 3.3e-34
                 EEEEEEEHHHHHHHHHHHHH...HHHCH............HHHT.....TTEEEEE....EEES....BHHHHHTS-GS...........EEEE--CCC CS
     Tubulin   1 eiivigvGqcGnqignelwellakehgiqsdg........dslesfFsesgkveyiprsvaidt....dpqvlneikags.....elfnpnklllgkeg 82 
                 +i+++gvG++G++++ ++ + l +   ++  g         +le    +++ v+ +  s a+ t    d+ + +++++       +    ++++lg ++
  KOO24685.1 244 KILIFGVGGGGGNTVARIPSALSSM--LSGMGeaadsatsATLEMCLLNTD-VQALTISAAAATrasaDAAAASNSRNPRsegaaDAVVISSVQLGASS 339
                 5999*************99955544..322234566666533333333344.554445555555444466667666666677777788889999***** PP

                 CTTC--TT-HHHHHHHHHHTHHHHHHHHTT-SE.SEEEEEEETTSSHHHHHHHHHHHHHHHTSTTSEEEEEEEE--GG.G-HHHHHHHHHHHHHHHHT- CS
     Tubulin  83 agnngaggypevgkeaaeeileeirkevekcdslqgffitaslgGGTGSGlgpvilevlkeeypkalvvtvvvlPsefsevvvepynailalkeliees 181
                  +++gagg pe +++aaee ++ ir ++ ++d+   +f+ta++gGGTGSG++pv++++++e   +alvv+vv +P++f e+ ++   a  a++el +++
  KOO24685.1 340 LRGLGAGGVPERARRAAEEEADAIRSRLIGADL---VFLTAGMGGGTGSGAAPVVARLARES--GALVVAVVSTPFGF-EGGTRHDTAQAAIEELGKHV 432
                 *********************************...**************************..**************.******************** PP

                 SEEEEEEHHHHHCCS CS
     Tubulin 182 davividNdaLlkil 196
                 d+++v++N++L++il
  KOO24685.1 433 DVLVVVHNEKLIQIL 447
                 ************996 PP

>> FtsZ_C  FtsZ family, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.1      0.73   3.3e+03      15      34 ..     275     294 ..     267     304 .. 0.75
   2 ?   -0.8   0.0      0.44     2e+03       7      33 ..     343     372 ..     338     380 .. 0.63
   3 !   20.7   0.0   8.7e-08   0.00039      55      94 ..     470     510 ..     463     511 .. 0.85

  Alignments for each domain:
  == domain 1  score: -1.5 bits;  conditional E-value: 0.73
                 HHHHHHHHHHTSGGGT--GG CS
      FtsZ_C  15 raeeaaeaaisspLLdvdls 34 
                  a++a+ a+++  LL++d++
  KOO24685.1 275 AADSATSATLEMCLLNTDVQ 294
                 46678888899999998876 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 0.44
                 EEEEESTTHHHHHHH...HHHTSGGGT--G CS
      FtsZ_C   7 vGeasgedraeeaae...aaisspLLdvdl 33 
                 +G     +ra++aae   +ai+s L+ +dl
  KOO24685.1 343 LGAGGVPERARRAAEeeaDAIRSRLIGADL 372
                 555555555555554111689998887665 PP

  == domain 3  score: 20.7 bits;  conditional E-value: 8.7e-08
                 HHHHHHHHHHS-TTSEEEEEEEE-TT-.-SEEEEEEEEES- CS
      FtsZ_C  55 eevaetireevdeeanvivGavideel.edeirvtvvatgl 94 
                  ev+e+++  + ++anvi+G++id++l +de+ v+ +atg+
  KOO24685.1 470 REVGEALSPLLVDDANVIFGTSIDPSLpDDEVIVSLIATGF 510
                 4677777778889*************95579*********8 PP

>> Tubulin_2  Tubulin like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.8   0.8   8.8e-05      0.39     115     182 ..     343     397 ..     246     422 .. 0.53

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 8.8e-05
   Tubulin_2 115 eGAGqiRtvGRlalfanleeirealrdaikrlrgsageeeglnvfVvgSLaGGTGSGiflDvayllrk 182
                  GAG+++   R a  ++++ ir++l  a               vf+  ++ GGTGSG +  va l r+
  KOO24685.1 343 LGAGGVPERARRAAEEEADAIRSRLIGA-------------DLVFLTAGMGGGTGSGAAPVVARLARE 397
                 4555555555555555544444443221.............259*************99988888775 PP

>> CO_deh_flav_C  CO dehydrogenase flavoprotein C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.1       1.2   5.4e+03      60      86 ..     102     129 ..      72     137 .. 0.61
   2 ?   -2.7   0.2       1.5   6.8e+03      47      74 ..     281     309 ..     265     318 .. 0.54
   3 ?   14.7   0.1   5.6e-06     0.025      38      72 ..     614     648 ..     613     658 .. 0.86

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 1.2
                    SH.HHHHHHHHHHHTTCHHHTCTTC-HH CS
  CO_deh_flav_C  60 se.elleeaakaleeelspasdprasae 86 
                    s+ + +e+a ++ + +++ +sd+r++  
     KOO24685.1 102 SAsDGVEKAEETPAGDAKAESDVRGQVR 129
                    3335566666666677777777776665 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 1.5
                    -HHHHHHHTTSBSSHHHHHHHH.HHHHTT CS
  CO_deh_flav_C  47 aekaeaaLiGkplseelleeaa.kaleee 74 
                       +e  L  +++++ ++++aa ++++++
     KOO24685.1 281 SATLEMCLLNTDVQALTISAAAaTRASAD 309
                    34456777777777755444440444444 PP

  == domain 3  score: 14.7 bits;  conditional E-value: 5.6e-06
                    ESSSSS-EE-HHHHHHHTTSBSSHHHHHHHHHHHH CS
  CO_deh_flav_C  38 ggvaptpvraekaeaaLiGkplseelleeaakale 72 
                    gg+aptp++a+ ae++L G ++ ++++++ +ka +
     KOO24685.1 614 GGAAPTPTTAPTAEEQLEGARWYDSIVARKLKAER 648
                    8************************9998887755 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (661 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       621  (0.0346366); expected 358.6 (0.02)
Passed bias filter:                      328  (0.0182944); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.58u 0.25s 00:00:00.83 Elapsed: 00:00:00.40
# Mc/sec: 4940.42
//
Query:       KOO24686.1  [L=181]
Description: ribosome biogenesis protein nop8 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.5e-13   50.4   2.0    3.6e-09   37.1   0.2    2.2  2  Ank_2     Ankyrin repeats (3 copies)
    3.6e-11   43.3   1.7    3.7e-06   27.4   0.1    3.5  4  Ank_4     Ankyrin repeats (many copies)
    3.9e-09   36.0   1.9    0.00027   21.1   0.0    4.6  5  Ank_3     Ankyrin repeat
    2.6e-08   34.0   3.7      0.002   18.5   0.0    3.7  4  Ank       Ankyrin repeat
    8.2e-05   22.8   2.8     0.0096   16.2   0.1    3.5  3  Ank_5     Ankyrin repeats (many copies)


Domain annotation for each model (and alignments):
>> Ank_2  Ankyrin repeats (3 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.8   0.2     5e-07    0.0018       2      73 ..       2     101 ..       1     104 [. 0.67
   2 !   37.1   0.2   9.9e-13   3.6e-09       1      70 [.      82     171 ..      82     176 .. 0.72

  Alignments for each domain:
  == domain 1  score: 18.8 bits;  conditional E-value: 5e-07
       Ank_2   2 hlAakn.gnlelvklLl..egadpn..k.ngktaLhyAakngnle........ivklLleh............adndgrtpLhyAars...ghleivkl 71 
                 h Aa   + +  v+ Ll   ++d+n  +  ++t+L + a+n + +        +++ Ll++             d++g + Lh+Aa     + + ++k 
  KOO24686.1   2 HKAAALlK-FAEVDALLaaGSKDVNtgDvLDQTPLTLLARNHYDNedvpkavaMIEKLLAAgaalvdeegkmkRDKYGDSLLHLAAMAsgrNGPAVIKA 99 
                 66777435.4468888885558888764888*********8533245666665566666533556555666666699*********8875423578887 PP

       Ank_2  72 Ll 73 
                 L+
  KOO24686.1 100 LV 101
                 77 PP

  == domain 2  score: 37.1 bits;  conditional E-value: 9.9e-13
       Ank_2   1 LhlAak....ngnlelvklLl....eg..........adpn.k.ngktaLhyAakngnleivklLleh......adndgrtpLhyAarsghleivk 70 
                 LhlAa+    ng + ++k L+     g          a  + k +g+taLh+A+ ngn+e+++lL+e+      ++++ +++L yA ++   e vk
  KOO24686.1  82 LHLAAMasgrNG-PAVIKALVdalpTGgpytkvqlvsA--RcKnFGNTALHWATLNGNVEACRLLIEAgtrldrLNRQKESILDYANKY---EHVK 171
                 899999743223.4799999986542256655444221..2326**********************97777666669999******543...5555 PP

>> Ank_4  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.1   0.0      0.18   6.6e+02       6      45 ..       2      41 ..       1      59 [. 0.70
   2 !    6.4   0.0    0.0039        14      30      50 ..      74      96 ..      63     101 .. 0.74
   3 !   20.3   0.1   1.7e-07   0.00062      29      55 .]     118     144 ..     111     144 .. 0.88
   4 !   27.4   0.1     1e-09   3.7e-06       2      48 ..     125     170 ..     124     172 .. 0.92

  Alignments for each domain:
  == domain 1  score: 1.1 bits;  conditional E-value: 0.18
       Ank_4  6 hyaaisgrlelvrlLlekg.adinaqdnrsGetalhiAakr 45
                h+aa+  ++  v+ Ll+ g +d+n   +  ++t+l   a++
  KOO24686.1  2 HKAAALLKFAEVDALLAAGsKDVNTG-DVLDQTPLTLLARN 41
                56666666666888998854999886.77777887766655 PP

  == domain 2  score: 6.4 bits;  conditional E-value: 0.0039
       Ank_4 30 qdnrsGetalhiAakrg..n.vei 50
                + +++G+++lh Aa+ +  n + +
  KOO24686.1 74 R-DKYGDSLLHLAAMASgrNgPAV 96
                5.899*********6543244444 PP

  == domain 3  score: 20.3 bits;  conditional E-value: 1.7e-07
       Ank_4  29 aqdnrsGetalhiAakrgnveilklLl 55 
                 a++ + G+talh A ++gnve+ +lL+
  KOO24686.1 118 ARCKNFGNTALHWATLNGNVEACRLLI 144
                 555789*******************98 PP

  == domain 4  score: 27.4 bits;  conditional E-value: 1e-09
       Ank_4   2 ltaLhyaaisgrlelvrlLlekgadinaqdnrsGetalhiAakrgnv 48 
                 +taLh+a   g++e++rlL+e g  +++  nr+ e+ l++A k ++v
  KOO24686.1 125 NTALHWATLNGNVEACRLLIEAGTRLDRL-NRQKESILDYANKYEHV 170
                 89**************************9.**********9777766 PP

>> Ank_3  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.2   0.0      0.23   8.2e+02       9      30 ..       5      25 ..       1      26 [. 0.66
   2 ?    0.0   0.1      0.55     2e+03       3      12 ..      32      41 ..      31      65 .. 0.59
   3 !    8.6   0.0   0.00092       3.3       1      23 [.      77     102 ..      77     107 .. 0.78
   4 !   21.1   0.0   7.5e-08   0.00027       2      26 ..     124     147 ..     123     151 .. 0.90
   5 ?   -2.4   0.0       3.3   1.2e+04       3      16 ..     158     171 ..     157     174 .. 0.72

  Alignments for each domain:
  == domain 1  score: 1.2 bits;  conditional E-value: 0.23
       Ank_3  9 AarsgnleivkfLlenkgadvn 30
                Aa+    e v++Ll     dvn
  KOO24686.1  5 AALLKFAE-VDALLAAGSKDVN 25
                34444446.99**998888888 PP

  == domain 2  score: 0.0 bits;  conditional E-value: 0.55
       Ank_3  3 etpLhlAars 12
                +tpL l ar+
  KOO24686.1 32 QTPLTLLARN 41
                5777777766 PP

  == domain 3  score: 8.6 bits;  conditional E-value: 0.00092
       Ank_3   1 nGetpLhlAarsgnl...eivkfLle 23 
                 +G ++LhlAa++      +++k+L++
  KOO24686.1  77 YGDSLLHLAAMASGRngpAVIKALVD 102
                 699****9999888745338988887 PP

  == domain 4  score: 21.1 bits;  conditional E-value: 7.5e-08
       Ank_3   2 GetpLhlAarsgnleivkfLlenkg 26 
                 G+t+Lh+A ++gn+e +++L+e  g
  KOO24686.1 124 GNTALHWATLNGNVEACRLLIE-AG 147
                 9********************9.56 PP

  == domain 5  score: -2.4 bits;  conditional E-value: 3.3
       Ank_3   3 etpLhlAarsgnle 16 
                 e++L +A ++ +++
  KOO24686.1 158 ESILDYANKYEHVK 171
                 67888888877765 PP

>> Ank  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.0       1.5   5.4e+03      19      28 ..      14      25 ..       4      29 .. 0.62
   2 ?    2.1   0.0     0.087   3.1e+02       3      25 ..      32      63 ..      31      67 .. 0.67
   3 !   12.3   0.1     5e-05      0.18       1      22 [.      77     101 ..      77     107 .. 0.78
   4 !   18.5   0.0   5.7e-07     0.002       2      25 ..     124     148 ..     123     155 .. 0.85

  Alignments for each domain:
  == domain 1  score: -1.8 bits;  conditional E-value: 1.5
                HHHH.TT.TSTT CS
         Ank 19 klLL.hG.Anln 28
                 +LL  G  ++n
  KOO24686.1 14 DALLaAGsKDVN 25
                457755645666 PP

  == domain 2  score: 2.1 bits;  conditional E-value: 0.087
                BBHHHHHHHHTT.........HHHHHHHH.TTT CS
         Ank  3 nTPLHlAatngk.........kriiklLL.hGA 25
                 TPL l a +++         + +i+ LL  GA
  KOO24686.1 32 QTPLTLLA-RNHydnedvpkaVAMIEKLLaAGA 63
                59999878.344355777777777777776675 PP

  == domain 3  score: 12.3 bits;  conditional E-value: 5e-05
                 TSBBHHHHHH..HHTT...HHHHHHHH CS
         Ank   1 dGnTPLHlAa..tngk...kriiklLL 22 
                 +G++ LHlAa  +  +   + +ik+L+
  KOO24686.1  77 YGDSLLHLAAmaS--GrngPAVIKALV 101
                 69*******9551..345599****98 PP

  == domain 4  score: 18.5 bits;  conditional E-value: 5.7e-07
                 SBBHHHHHHHHTTHHHHHHHH.TTT CS
         Ank   2 GnTPLHlAatngkkriiklLL.hGA 25 
                 GnT+LH+A  ng+++ ++lL+  G 
  KOO24686.1 124 GNTALHWATLNGNVEACRLLIeAGT 148
                 9******99***********96674 PP

>> Ank_5  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.0   0.1     0.018        66       1      27 [.      16      42 ..      16      46 .. 0.89
   2 ?    0.1   0.0       0.3   1.1e+03      45      56 .]      74      85 ..      51      85 .. 0.74
   3 !   16.2   0.1   2.7e-06    0.0096      14      56 .]     122     164 ..     116     164 .. 0.74

  Alignments for each domain:
  == domain 1  score: 4.0 bits;  conditional E-value: 0.018
       Ank_5  1 LlehgpadvnrldgggntpLhvAakyg 27
                Ll++g+ dvn+ d   +tpL + a+++
  KOO24686.1 16 LLAAGSKDVNTGDVLDQTPLTLLARNH 42
                899*****************8888876 PP

  == domain 2  score: 0.1 bits;  conditional E-value: 0.3
       Ank_5 45 tdsrGltaldlA 56
                +d++G+++l+lA
  KOO24686.1 74 RDKYGDSLLHLA 85
                566777777766 PP

  == domain 3  score: 16.2 bits;  conditional E-value: 2.7e-06
       Ank_5  14 gggntpLhvAakygaadvvrlLlargadlnltdsrGltaldlA 56 
                 ++gnt+Lh+A  +g+ + +rlL++ g  l+  + + ++ ld+A
  KOO24686.1 122 NFGNTALHWATLNGNVEACRLLIEAGTRLDRLNRQKESILDYA 164
                 5799*******************44444444444446666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (181 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       413  (0.0230353); expected 358.6 (0.02)
Passed bias filter:                      360  (0.0200792); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.39u 0.24s 00:00:00.63 Elapsed: 00:00:00.37
# Mc/sec: 1463.61
//
Query:       KOO24687.1  [L=369]
Description: f-box only protein 11 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      1e-20   74.2  12.4    2.8e-17   63.0   5.6    2.3  2  Beta_helix  Right handed beta helix region
    2.1e-13   50.1   0.2    1.4e-07   31.0   0.0    2.1  2  NosD        Periplasmic copper-binding protein (NosD)
    2.7e-05   23.6   1.9      0.057   12.8   0.0    2.6  2  DUF1565     Protein of unknown function (DUF1565)
  ------ inclusion threshold ------
       0.13   12.2   0.0          3    7.8   0.0    2.4  2  Big_11      Bacterial Ig-like domain


Domain annotation for each model (and alignments):
>> Beta_helix  Right handed beta helix region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.0   5.6   6.4e-21   2.8e-17       3     158 .]     169     323 ..     144     323 .. 0.89
   2 !   23.1   0.5   1.2e-08   5.5e-05      14      78 ..     273     338 ..     267     355 .. 0.50

  Alignments for each domain:
  == domain 1  score: 63.0 bits;  conditional E-value: 6.4e-21
                 EEE-SS-E..EEESEEEES-SS-SEEE-SSS-.EEES-EEES-SS-SEEE-TT-S-EEES-EEE---SEEE-TT--S--EEES-EEES-SS-SEE-TT- CS
  Beta_helix   3 isingssn.vtiknntisnsggyGiylrgssnvvienneiannsgsGiyilgssnntisnntisdnngggialfgasnnlienneitdnggsGiylnys 100
                 i+i+g ++   i  n +sn +g Gi + +  + +ie+n++ +ns  G++il+++n +++ n+i+ +++ g+ +++ ++  ie n+i+ n ++G+ +   
  KOO24687.1 169 IVIKGMDScGYILHNMVSNGKGVGILVCDHARGLIEDNDVVGNSRAGVAILSGANPVVRLNRIHAGKDAGVLVSEKGRGRIEENDIFANLRAGVAILRE 267
                 44444444334778888888888888888888******************************************************************* PP

                 S--EEES-EEESTT--SEE---TT---EEES-EEES-SSEEEE-TT-SS--EEES-E. CS
  Beta_helix 101 snntienNiidnnagsGividdsssnvtvtnNtitnnkgaGiavvgsssnvtvrnNti 158
                  +  +++N+i +   sG+ + +++ +  v +N i+ n  aG+a+ ++++  tv++Nti
  KOO24687.1 268 GSPFVSRNRIFDGFDSGVLVCEQG-KGSVVDNDIYANQMAGVAIGHGGA-STVKGNTI 323
                 ************************.77778999998888***9999999.******97 PP

  == domain 2  score: 23.1 bits;  conditional E-value: 1.2e-08
                 ESEEEES-SS-SEEE-SSS-.EEES-EEES-SS-SEEE-TT-S-EEES-EEE---.SEEE-TT--S CS
  Beta_helix  14 knntisnsggyGiylrgssnvvienneiannsgsGiyilgssnntisnntisdnn.gggialfgas 78 
                 + n i +  ++G+ + ++++  + +n+i+ n++ G++i  +  +t+++nti+d+  g+ ++l+  s
  KOO24687.1 273 SRNRIFDGFDSGVLVCEQGKGSVVDNDIYANQMAGVAIGHGGASTVKGNTIRDGSgGSLLCLSTHS 338
                 333333334555555555554444455555555555555555555555555555533333333444 PP

>> NosD  Periplasmic copper-binding protein (NosD)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.0   0.0   3.2e-11   1.4e-07      72     159 ..     179     268 ..     143     279 .. 0.67
   2 !   20.5   0.0   5.1e-08   0.00023      82     167 ..     259     345 ..     254     356 .. 0.43

  Alignments for each domain:
  == domain 1  score: 31.0 bits;  conditional E-value: 3.2e-11
        NosD  72 tiedntlssne.sGialmsssnntlenNtisnnenyGillsdssnntisnNtis.nnnkGiflensssntitgNriesnqkiGilllsss 159
                 +i  n +s+ +  Gi++ +  +  +e+N + +n+++G+ +   +n  ++ N+i   +++G+ ++++ + +i++N i +n   G+ +l ++
  KOO24687.1 179 YILHNMVSNGKgVGILVCDHARGLIEDNDVVGNSRAGVAILSGANPVVRLNRIHaGKDAGVLVSEKGRGRIEENDIFANLRAGVAILREG 268
                 445555555555777777777777777777777777776666666777777777777777777777777777777777777777755544 PP

  == domain 2  score: 20.5 bits;  conditional E-value: 5.1e-08
        NosD  82 esGialmsssnntlenNtisnnenyGillsdssnntisnNtis.nnnkGiflensssntitgNriesnqkiGilllsssegntiynN 167
                 ++G+a+ ++   +++ N+i +  + G+l+ ++ + ++ +N i  n+ +G+ +     +t++gN+i +  +  +l ls+ ++ +i  N
  KOO24687.1 259 RAGVAILREGSPFVSRNRIFDGFDSGVLVCEQGKGSVVDNDIYaNQMAGVAIGHGGASTVKGNTIRDGSGGSLLCLSTHSRGLICAN 345
                 344444444433444444444444444444444444444444444444444444444444444444443333333344444444444 PP

>> DUF1565  Protein of unknown function (DUF1565)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.8   0.0   1.3e-05     0.057      15      50 ..      61      96 ..      54     105 .. 0.87
   2 !    8.5   1.5   0.00026       1.2      66     162 ..     182     288 ..     168     351 .. 0.67

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 1.3e-05
     DUF1565 15 fktiTkAlllakageviqlapGtYseatgEtFPlvi 50
                f +i  A++ ak+++++ +apGtY e      P+ i
  KOO24687.1 61 FSSIRAAIACAKPQDTVLIAPGTYRERLDIDKPIDI 96
                88999*******************998877777765 PP

  == domain 2  score: 8.5 bits;  conditional E-value: 0.00026
     DUF1565  66 skslyagkkvgplisgggddlsgvqnvtivlaneatiaGvtitNp.......nilkgtgvliesa.sakianNtitgniadGiev....siyeaktgag 152
                 ++++  gk vg+l+  ++  l   + + +v++++a +a +   Np       +  k+ gvl+++    +i++N i +n++ G+      s + +++ + 
  KOO24687.1 182 HNMVSNGKGVGILVCDHARGLI--EDNDVVGNSRAGVAILSGANPvvrlnriHAGKDAGVLVSEKgRGRIEENDIFANLRAGVAIlregSPFVSRNRIF 278
                 5677788899998888888876..556899999999999999999999976544789999999997889****99999999987755553333333333 PP

     DUF1565 153 gniisGnsil 162
                 +   sG  + 
  KOO24687.1 279 DGFDSGVLVC 288
                 3333333333 PP

>> Big_11  Bacterial Ig-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.8   0.0     0.052   2.3e+02      31      65 ..     234     268 ..     231     277 .. 0.85
   2 ?    7.8   0.0   0.00067         3      29      60 ..     278     309 ..     275     324 .. 0.86

  Alignments for each domain:
  == domain 1  score: 1.8 bits;  conditional E-value: 0.052
      Big_11  31 GiekevtinedGsvtipnseLpeedttgeatikep 65 
                 G++  v + e G + i ++++  +   g a+ +e+
  KOO24687.1 234 GKDAGVLVSEKGRGRIEENDIFANLRAGVAILREG 268
                 89999**************9988888888887776 PP

  == domain 2  score: 7.8 bits;  conditional E-value: 0.00067
      Big_11  29 lpGiekevtinedGsvtipnseLpeedttgea 60 
                 ++G++  v + e+G++++ ++++  +++ g a
  KOO24687.1 278 FDGFDSGVLVCEQGKGSVVDNDIYANQMAGVA 309
                 79********************9998888876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (369 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       258  (0.0143901); expected 358.6 (0.02)
Passed bias filter:                      215  (0.0119917); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.46u 0.25s 00:00:00.71 Elapsed: 00:00:00.39
# Mc/sec: 2840.92
//
Query:       KOO24688.1  [L=291]
Description: hypothetical protein Ctob_007951 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    8.9e-08   32.0   0.0    7.4e-07   29.0   0.0    2.1  2  NT-C2     N-terminal C2 in EEIG1 and EHBP1 proteins


Domain annotation for each model (and alignments):
>> NT-C2  N-terminal C2 in EEIG1 and EHBP1 proteins
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.0   0.0   4.1e-11   7.4e-07      66     138 ..       1      69 [.       1      77 [. 0.76
   2 ?    0.5   0.0     0.026   4.6e+02      39      71 ..     223     259 ..     201     273 .. 0.80

  Alignments for each domain:
  == domain 1  score: 29.0 bits;  conditional E-value: 4.1e-11
       NT-C2  66 lflnkkgkkfeeKllelsvysvlskskkkkelGkvelnlaeyvnedeepttsrfllkkskkvnsilslsiqlk 138
                 +++n k++ fe+K  ++s++++  + k+ k++G++ ++l++y+ +d+++ ++++ + +    +  l+l+++ +
  KOO24688.1   1 MYKNAKTGAFESKSASFSLREEGADGKE-KKIGSAAIDLSSYATSDKTSERVELGFLNG---KIRLHLTLTTH 69 
                 79999*****************755555.5**************886666666655555...55555555444 PP

  == domain 2  score: 0.5 bits;  conditional E-value: 0.026
       NT-C2  39 s....ssgttekakvqngraewneelkipvtlflnkk 71 
                 +     + +te  + ++ ra+ +e+l++  +  l++ 
  KOO24688.1 223 RdeviLQLETELYQEHHERADMEENLSRAFRSVLDDA 259
                 134456789999999***********99888777755 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (291 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1085  (0.0605165); expected 358.6 (0.02)
Passed bias filter:                      498  (0.0277762); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.23s 00:00:00.66 Elapsed: 00:00:00.37
# Mc/sec: 2336.43
//
Query:       KOO24689.1  [L=154]
Description: nickel import ATP-binding protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    9.6e-05   22.9   0.0    0.00026   21.5   0.0    1.7  2  ABC_tran  ABC transporter
  ------ inclusion threshold ------
       0.15   11.5   0.0        0.2   11.1   0.0    1.2  1  SMC_N     RecF/RecN/SMC N terminal domain


Domain annotation for each model (and alignments):
>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.5   0.0   2.9e-08   0.00026     107     135 ..      23      51 ..       6      53 .. 0.86
   2 ?   -1.8   0.0      0.45     4e+03      49      69 ..     111     131 ..      88     149 .. 0.61

  Alignments for each domain:
  == domain 1  score: 21.5 bits;  conditional E-value: 2.9e-08
                 GGS-HHHHHHHHHHHHHHHTSSEEEEEST CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran 107 ssLSgGqkqrvalarallkkpkllllDEp 135
                  +LSgGq+  v l  +l+++p++l++DE+
  KOO24689.1  23 GELSGGQRHLVYLLSVLASRPRVLICDEC 51 
                 89**************************7 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 0.45
                 GGGB-HHHCCHCEEEE-SS-- CS
                 xxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  49 lkeqeleslrkeigvlpqepq 69 
                  ++ e+++ +  + +++q ++
  KOO24689.1 111 HDMVERPQRKDTLVYITQCTE 131
                 444555666666666666533 PP

>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   2.2e-05       0.2     131     194 ..      19      78 ..      11     103 .. 0.78

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 2.2e-05
                 T-STTCS-HHHHHHHHHHHHHHHHCCS--SEEEECTTTTTS-HHHHHHHHHHHHHHCTTSEEEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N 131 giskelLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvkkvaellkeksknaQfiv 194
                 g++  +LSgG++ Lv l   +++ + +p+ l + De    LD  + + + +ll++ + ++ + +
  KOO24689.1  19 GLTCGELSGGQRHLVYL---LSVLASRPRVL-ICDECLCSLDIDRQSSMLKLLQRLQLKFGLAI 78 
                 667778********986...56666778765.67***************999998876655544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (154 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       453  (0.0252663); expected 358.6 (0.02)
Passed bias filter:                      361  (0.020135); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.39u 0.24s 00:00:00.63 Elapsed: 00:00:00.40
# Mc/sec: 1146.34
//
Query:       KOO24690.1  [L=620]
Description: hypothetical protein Ctob_007948 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.3e-06   26.9  13.3    4.3e-06   26.9  13.3    2.2  2  EamA             EamA-like transporter family
    0.00078   19.9   0.0     0.0013   19.2   0.0    1.3  1  Sulfotransfer_3  Sulfotransferase family
  ------ inclusion threshold ------
       0.18   11.2   0.0       0.29   10.6   0.0    1.2  1  Sulfotransfer_1  Sulfotransferase domain


Domain annotation for each model (and alignments):
>> EamA  EamA-like transporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.9  13.3   7.2e-10   4.3e-06       3     135 ..     266     410 ..     264     412 .. 0.85
   2 ?   -0.7  14.3      0.25   1.5e+03       3     132 ..     430     570 ..     428     574 .. 0.70

  Alignments for each domain:
  == domain 1  score: 26.9 bits;  conditional E-value: 7.2e-10
        EamA   3 gillallaalfwaiyfvls.killrkvspltltfvrfliagilllii.........allkegklaklslkdwllllllgllgtvlaf...llffyalkk 88 
                 g ll++ ++l+w +y+ +   i++ +++   ++++ +  + ++ll++         ++ +e+++ + +lk+ l  l lgll +vl++     ++ +l+ 
  KOO24690.1 266 GSLLIFSSVLIWVVYAEMLqNIASDEWNKPYTLAIVLKSSWVFLLPLwyvlhtcqeSVQTEITF-RRPLKPTLKTLQLGLLMMVLTQaasATWIASLSL 363
                 889************97664888****999999999999*****99999999999988888888.666666666666666665555433389******* PP

        EamA  89 tsasnaslitslePvftlilsvlllgekltlkqllgivlillGvlli 135
                 ts+s+ + + ++ P+++ ++s+ ll+++ltl+++l+++ +++++ ++
  KOO24690.1 364 TSVSINTAVYNVNPLLVYVFSIPLLKQPLTLTSMLAVLGAMIATSIV 410
                 **************************************999988766 PP

  == domain 2  score: -0.7 bits;  conditional E-value: 0.25
        EamA   3 gillallaalfwaiyfvlskillrkvspltltfvrfliagill...........liiallkegkl...aklslkdwllllllgllgtvlafllffyalk 87 
                 g++++l++a ++++  v+ k+++ +vs   + f  +l+  ++            ++++ +++  +   ++++ +  +++ l++ l +++++ +++ a+ 
  KOO24690.1 430 GVVTVLASATIYSFKEVIFKKVFPSVSVSLTPFTDSLLVVAIIgfasvvtmgpmIALLHYSG--FepfEVPPIELTKSYGLVA-LLMAAYQTCLLAAIA 525
                 88999999999999999999997777444333322222222220011122332122233333..2357778887788888888.789************ PP

        EamA  88 ktsasnaslitslePvftlilsvlllgekltlkqllgivlillGv 132
                  t+++++++   l++  ++ + ++  g  + +++  giv i+l+ 
  KOO24690.1 526 LTTPTFVAVGAMLSVPASITYDFFARGYVVPVLSRWGIVGIILSF 570
                 ***********9999999999999999999999988888888875 PP

>> Sulfotransfer_3  Sulfotransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.2   0.0   2.1e-07    0.0013      75     216 ..      30     172 ..       8     173 .. 0.75

  Alignments for each domain:
  == domain 1  score: 19.2 bits;  conditional E-value: 2.1e-07
                      HHHHHHHHHHTT-BHHHHHHHHHHHTTTSEEEEEESSGGG...-HHHHHHHB..SSEEEEE..EE--H.HHHHHH.HHHTT----------..- CS
  Sulfotransfer_3  75 epeedlqllraalasvilealarvpsyarwlvdKsPshlf...rldlllelf..PdAkfih..lvRdpvdtvlss.yvslfgkkresysedsld 160
                      ++++++ ++ +++a+++++   +++s++++l+ K+ +++f   ++  +++++     k++h  ++R+p+++++s  y+s + ++++ y+  ++d
       KOO24690.1  30 AEDRRVAATFSSVAQRLWHD--PLKSGKKYLFSKNLTYYFaphCIPSMHAMLggDYSKVVHsfIIRHPAKAIVSLyYKSCIDNEKTGYT--HFD 119
                      44455566677888888876..999999*******999995556666677767778899976689***888888744777777777787..555 PP

                      HHHHHHHHHHHHHHHHHHH.HHHS-TTSEEEEEHHHHHH-HHHHHHHHHHHHT---- CS
  Sulfotransfer_3 161 eledaleewarayerllaa.rarlppdrfldvrYedLvadpegtlrriyeflglpwd 216
                      ++e      + +++++l++ +++ +   ++ ++ +dL +dpeg +++ ++ +glp++
       KOO24690.1 120 PAE----AGYTSMRDILDHvEQQKGCLPVVIIDADDLLEDPEGLMTEYCAAVGLPFK 172
                      554....5555555555553666777789**************************97 PP

>> Sulfotransfer_1  Sulfotransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0   4.8e-05      0.29     110     201 ..      91     174 ..      79     205 .. 0.87

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 4.8e-05
                      EE--HHHHHHHHHHHHHHBTTSTTT-S-HHHHHHHHHTTHSTTC-HHHHHHHHHHHTTTTTEEEEEHHHHHHHHHHHHHHHHHHTT--..HH CS
  Sulfotransfer_1 110 lvRnpkdvavSryhfsrslkklkepetpfeeffdlflegrvvcgsyfdhvkswlklrkkgnvlflrYEdlkkdpakeikkiaeFlGipltee 201
                      ++R p+ ++vS y+ s +++ +++ ++   + fd   +g +++ +++dhv+   +++    v +++ +dl +dp++ + + +   G+p+++ 
       KOO24690.1  91 IIRHPAKAIVSLYYKS-CID-NEKTGY---THFDPAEAGYTSMRDILDHVE---QQKGCLPVVIIDADDLLEDPEGLMTEYCAAVGLPFKPS 174
                      79************99.444.577788...468999999999999999999...8888999**********************999998854 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (620 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       606  (0.0338); expected 358.6 (0.02)
Passed bias filter:                      341  (0.0190195); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.54u 0.24s 00:00:00.78 Elapsed: 00:00:00.40
# Mc/sec: 4690.72
//
Query:       KOO24691.1  [L=731]
Description: hypothetical protein Ctob_007946 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.7e-19   69.5   0.0    3.7e-19   68.4   0.0    1.6  1  Sec20         Sec20
    3.2e-10   39.7   0.0      0.004   16.5   0.0    3.3  3  DUF5561       Family of unknown function (DUF5561)
  ------ inclusion threshold ------
       0.48   11.0   4.4         15    6.2   0.7    2.9  2  Syntaxin-6_N  Syntaxin 6, N-terminal


Domain annotation for each model (and alignments):
>> Sec20  Sec20
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   68.4   0.0   6.1e-23   3.7e-19       2      92 .]     147     237 ..     146     237 .. 0.98

  Alignments for each domain:
  == domain 1  score: 68.4 bits;  conditional E-value: 6.1e-23
       Sec20   2 qakqiTeslraisqllsqevqqSeenleeldastkslekleeeykqvedvlsrskklvkklerrdktdkllvflalglflacvvyvvkkRi 92 
                  a+++Teslr+ ++l+++e q+ e +l +ld++ k+l  + +e+ +++++l  +++ ++ le rd+tdk+l  la+g+f+++v+++v kR+
  KOO24691.1 147 AARDVTESLRRTRALMANELQRTEATLRSLDEQGKKLRGTLNEHRGIDGTLASGRRKLNRLETRDMTDKVLFALAFGFFVCVVLHIVNKRL 237
                 5789**************************************************************************************7 PP

>> DUF5561  Family of unknown function (DUF5561)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.0   0.0    0.0044        26      18      75 ..     272     328 ..     256     338 .. 0.72
   2 !   16.5   0.0   6.7e-07     0.004      80     109 ..     401     431 ..     366     440 .. 0.71
   3 !   15.2   0.0   1.6e-06    0.0098     161     187 ..     558     584 ..     542     618 .. 0.85

  Alignments for each domain:
  == domain 1  score: 4.0 bits;  conditional E-value: 0.0044
     DUF5561  18 eskeesnpskllqlytqavlditffeenkLvdedFpedsslqkvkelikilsepealv 75 
                    + s   ++  ++ + +l+ tf  e+++vde F++   +  ++ ++++l+  +a++
  KOO24691.1 272 AALKLSDLKTMTTEWIHGMLEATFPLESNIVDEGFADGD-ELALRVVLAALDGAHAVA 328
                 4556666778899999*******************8753.344566666666666665 PP

  == domain 2  score: 16.5 bits;  conditional E-value: 6.7e-07
     DUF5561  80 eeklevLGaelleCllWRrGal.lYmyChtv 109
                  ++l+v Ga+l e llWRrGal +Ym  ++v
  KOO24691.1 401 VDELQVFGADLWEALLWRRGALrFYMASTAV 431
                 35699*****************667766655 PP

  == domain 3  score: 15.2 bits;  conditional E-value: 1.6e-06
     DUF5561 161 lseGifsDthlLalmYsGelCyWglky 187
                 l+ Gi+s thlL+l +  el yW+   
  KOO24691.1 558 LRYGIYSTTHLLGLAFLSELSYWRWAA 584
                 889********************8655 PP

>> Syntaxin-6_N  Syntaxin 6, N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.2   0.7    0.0025        15       3      72 ..      36     103 ..      35     113 .. 0.85
   2 ?    5.0   0.2    0.0062        37       5      52 ..     146     189 ..     137     194 .. 0.76

  Alignments for each domain:
  == domain 1  score: 6.2 bits;  conditional E-value: 0.0025
  Syntaxin-6_N   3 FfevkeeVqkslnkaeslyrrwerlledtss.stseeldetrteLrkalrsiewdledLeetvriveknps 72 
                   F  + + V+ sl++ ++ ++  e+l  +++  s++ee++ + +  r++ ++++  l++L   vr   +++s
    KOO24691.1  36 FEAASSGVRASLRRHAEQVDALEQLAAVQDRpSEEEEVRALVRRHRAEAGTLSMSLRELAAKVR---SDRS 103
                   6677788999************999999999889**************************9994...4433 PP

  == domain 2  score: 5.0 bits;  conditional E-value: 0.0062
  Syntaxin-6_N   5 evkeeVqkslnkaeslyrrwerlledtssstseeldetrteLrkalrs 52 
                   +++++V +sl+++++l+++  +  +++  +t  +lde+ ++Lr +l++
    KOO24691.1 146 QAARDVTESLRRTRALMANELQ--RTE--ATLRSLDEQGKKLRGTLNE 189
                   5788899999999999887543..333..3478888888888888875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (731 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       830  (0.0462937); expected 358.6 (0.02)
Passed bias filter:                      364  (0.0203023); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.60u 0.29s 00:00:00.88 Elapsed: 00:00:00.44
# Mc/sec: 5005.08
//
Query:       KOO24692.1  [L=232]
Description: hypothetical protein Ctob_007947 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
        4.2    6.8   4.5        5.8    6.3   4.5    1.1  1  CAP_N     Adenylate cyclase associated (CAP) N terminal


Domain annotation for each model (and alignments):
>> CAP_N  Adenylate cyclase associated (CAP) N terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.3   4.5   0.00032       5.8     247     272 ..      19      44 ..       3      53 .. 0.48

  Alignments for each domain:
  == domain 1  score: 6.3 bits;  conditional E-value: 0.00032
                 ....XXXXXXXX.....XXXXXXXXX CS
       CAP_N 247 pppPpPpPppasvfeeesaaasasaa 272
                  ++PpPpP+p  + +++++aa+a++a
  KOO24692.1  19 NAAPPPPPAPDTPNTAAAKAAAAAEA 44 
                 23344444444333333322333322 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (232 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       487  (0.0271627); expected 358.6 (0.02)
Passed bias filter:                      354  (0.0197445); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.24s 00:00:00.67 Elapsed: 00:00:00.40
# Mc/sec: 1726.27
//
Query:       KOO24693.1  [L=469]
Description: voltage-gated ion channel superfamily [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    7.4e-16   58.1   7.7    1.1e-15   57.5   7.7    1.2  1  Ion_trans  Ion transport protein


Domain annotation for each model (and alignments):
>> Ion_trans  Ion transport protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.5   7.7   6.4e-20   1.1e-15       4     225 ..      94     369 ..      91     382 .. 0.73

  Alignments for each domain:
  == domain 1  score: 57.5 bits;  conditional E-value: 6.4e-20
                 HHHHHHHHHHHHHHHHHCCCSSSSHHHHC.HHHHHHHHHHHHHHHHHHHHHHHHHTH.......................HHHHHHCHSHHHHHHHHHH CS
   Ion_trans   4 felfilllillncvflaletyfpedelek.tileilelvftaiftlemllkilalgl.......................likkrYlrdpwnilDflvv 78 
                 ++++  l +l ++++ ++e +f  + ++  ++++i++ v++ if+++m+l+++ ++                         i+++Yl    + +D++++
  KOO24693.1  94 WDIVTALALLFTATLTPFEIAFIDQAESPaNAWFIVNRVVDLIFIVDMVLQFFIAYEdrqknkahgkgffytreviwdrrRIWRHYLLGS-FSVDLVSI 191
                 8999999999************99777779************************88889999***************************7.******** PP

                 HHHHHHH.......HHHH........HHHHHHHHHHHHGGGGGGHHHCHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCC... CS
   Ion_trans  79 lpsllsl.......vlse........esllllsvlrlfrvlrllklisrleglrtlvtalirsvkdllnvlllllvvlfifaligvqlfkgklrek... 159
                 lps+l++       +  +         +l +l++++l+r++r+ ++isr+++   + ++    +  l+ +ll++++ ++i al +   f+ +l  +   
  KOO24693.1 192 LPSFLDVlplmtqeF--NigidtramRALRVLRLIKLIRLMRAQRVISRVSSRISISHTSQTLISCLVAILLASHWYACIMALQA--SFHPSLSDTflg 286
                 *******88765550..15555555667888888888888888888888888555555666666666666666666666666655..553444433554 PP

                 .............CCSCCSTSSSTTTSSSSSS.......................HHHHHHHHHHHHTTSSHHHHHHHHHHHSHHHHHHHHHHHHHHHH CS
   Ion_trans 160 .............necaktwenpnngntnFdn.......................fftallwlfrlmttegwgdilyatldekskvaliyfvifiilgs 222
                              +            +    +                       ++ a+ w+  ++t+ g +d ++   +       +++v+f+++++
  KOO24693.1 287 tfgycddsfatstE-----------AT----TesgggvlarklarecpgldlaqwYIAAFSWSSMVITGTGGTDAYPSKNSVA----ETILVVFLVIFG 366
                 44333333333330...........22....133445555666666666777777*****999999**998888887766655....456666666665 PP

                 HHH CS
   Ion_trans 223 fll 225
                  ll
  KOO24693.1 367 ALL 369
                 555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (469 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       672  (0.0374812); expected 358.6 (0.02)
Passed bias filter:                      432  (0.024095); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.50u 0.27s 00:00:00.77 Elapsed: 00:00:00.42
# Mc/sec: 3378.98
//
Query:       KOO24694.1  [L=201]
Description: ataxin-10-like protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.9e-26   92.0   0.1    2.8e-26   91.4   0.1    1.3  1  Atx10homo_assoc  Spinocerebellar ataxia type 10 protein domai
  ------ inclusion threshold ------
      0.023   14.2   0.0      0.031   13.8   0.0    1.1  1  Arm_2            Armadillo-like


Domain annotation for each model (and alignments):
>> Atx10homo_assoc  Spinocerebellar ataxia type 10 protein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   91.4   0.1   3.2e-30   2.8e-26       3      98 ..      90     188 ..      88     189 .. 0.95

  Alignments for each domain:
  == domain 1  score: 91.4 bits;  conditional E-value: 3.2e-30
  Atx10homo_assoc   3 relvrllgnlvyknkevqdkvreldgleliLsqcniDdnnPfirewailairnLlegneenqelvaeLe..akgvvdeevLeelgleveided. 93 
                      +e +rl++++++ + +v+d+vrel+gl ++L++c++D+ nP i+ewa++airnL+e++++n+e++a++e  +++v++  vLe++ lev ++ + 
       KOO24694.1  90 QEAIRLIAFMAHGSVAVRDRVRELGGLFTVLQRCQLDEANPNIKEWAVFAIRNLTENSQANREFLAQIEraPCSVANPGVLEQADLEVGVNRQt 183
                      689******************************************************************7778889**************9888 PP

  Atx10homo_assoc  94 gklkl 98 
                      gkl++
       KOO24694.1 184 GKLEV 188
                      99875 PP

>> Arm_2  Armadillo-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.0   3.4e-06     0.031      21      95 ..      81     157 ..      72     165 .. 0.80

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 3.4e-06
       Arm_2  21 Lkssedpliqeialltlgnsaaysvnqdiirdlggitiian..llsksnaevkekalnalnnlsenvenqkkikvyv 95 
                 L   + ++ qe++ l+   +    + +d +r+lgg+ ++ +   l + n+++ke a+ a+ nl en++ +++  + +
  KOO24694.1  81 LAVPTHSMEQEAIRLIAFMAHGSVAVRDRVRELGGLFTVLQrcQLDEANPNIKEWAVFAIRNLTENSQANREFLAQI 157
                 556667788888877777777777889********98886523699*********************9988766555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (201 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       487  (0.0271627); expected 358.6 (0.02)
Passed bias filter:                      379  (0.0211389); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.39u 0.26s 00:00:00.65 Elapsed: 00:00:00.40
# Mc/sec: 1491.89
//
Query:       KOO24695.1  [L=347]
Description: hypothetical protein Ctob_006777 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (347 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       402  (0.0224218); expected 358.6 (0.02)
Passed bias filter:                      276  (0.0153941); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.44u 0.23s 00:00:00.67 Elapsed: 00:00:00.38
# Mc/sec: 2738.90
//
Query:       KOO24696.1  [L=796]
Description: troponin skeletal muscle [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.9e-12   46.1   8.8    4.2e-06   26.4   0.1    6.7  6  LRR_6      Leucine Rich repeat
    1.6e-10   39.8   1.5    3.6e-05   23.0   0.0    2.6  2  EF-hand_1  EF hand
      5e-09   36.5   0.2    1.2e-08   35.3   0.2    1.6  1  EF-hand_7  EF-hand domain pair
    4.2e-08   32.5   0.4     0.0018   18.0   0.3    2.8  2  EF-hand_6  EF-hand domain
    1.1e-05   25.7   0.0    2.9e-05   24.3   0.0    1.7  1  EF-hand_9  EF-hand domain
      3e-05   23.3   3.0      0.025   14.1   0.0    2.7  3  EF-hand_5  EF hand
      5e-05   23.1   2.0    0.00013   21.7   0.6    2.4  2  EF-hand_8  EF-hand domain pair
     0.0013   19.0   5.3        7.2    7.6   0.0    6.0  6  LRR_1      Leucine Rich Repeat
      0.002   18.2   0.0      0.011   15.9   0.0    2.3  3  SAM_2      SAM domain (Sterile alpha motif)
     0.0047   17.3   0.4         44    4.7   0.0    5.1  5  LRR_4      Leucine Rich repeats (2 copies)
     0.0052   17.2   0.0       0.11   13.0   0.0    2.7  2  SAM_1      SAM domain (Sterile alpha motif)
  ------ inclusion threshold ------
       0.11   12.6   0.0       0.24   11.6   0.0    1.4  1  UPF0561    Uncharacterised protein family UPF0561


Domain annotation for each model (and alignments):
>> LRR_6  Leucine Rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.0       2.4   3.6e+03       6      15 ..     145     154 ..     145     155 .. 0.86
   2 !    7.6   0.0     0.003       4.4       5      24 .]     212     231 ..     210     231 .. 0.84
   3 !   26.4   0.1   2.8e-09   4.2e-06       1      24 []     236     259 ..     236     259 .. 0.96
   4 ?    4.4   0.0     0.031        47       1      24 []     480     502 ..     480     502 .. 0.87
   5 ?    3.6   0.0     0.058        87       5      17 ..     551     564 ..     551     567 .. 0.88
   6 ?    3.2   0.0     0.079   1.2e+02       2      16 ..     578     592 ..     577     593 .. 0.89

  Alignments for each domain:
  == domain 1  score: -1.5 bits;  conditional E-value: 2.4
       LRR_6   6 teLdLsgNdI 15 
                 +++dL+ N I
  KOO24696.1 145 KYVDLTNNVI 154
                 689*****98 PP

  == domain 2  score: 7.6 bits;  conditional E-value: 0.003
       LRR_6   5 LteLdLsgNdIgDeGaeaLa 24 
                 L +L+L++  IgDeGa aLa
  KOO24696.1 212 LSSLELAFDSIGDEGAVALA 231
                 6778888888*********8 PP

  == domain 3  score: 26.4 bits;  conditional E-value: 2.8e-09
       LRR_6   1 snthLteLdLsgNdIgDeGaeaLa 24 
                 +nthLt++dLsgN+Ig  Ga+aL+
  KOO24696.1 236 QNTHLTAVDLSGNNIGARGATALM 259
                 69********************96 PP

  == domain 4  score: 4.4 bits;  conditional E-value: 0.031
       LRR_6   1 snthLteLdLsgNdIgDeGaeaLa 24 
                 +n++L+ L L g+ IgD G+e L+
  KOO24696.1 480 HNRSLKRLYL-GCRIGDMGVENLC 502
                 7899999999.689***9999998 PP

  == domain 5  score: 3.6 bits;  conditional E-value: 0.058
       LRR_6   5 LteLdLsgNd.IgD 17 
                 L+eL LsgN+ +g+
  KOO24696.1 551 LRELRLSGNHgLGG 564
                 89*******98886 PP

  == domain 6  score: 3.2 bits;  conditional E-value: 0.079
       LRR_6   2 nthLteLdLsgNdIg 16 
                 +++L+ L+L g++++
  KOO24696.1 578 HQSLRVLHLDGCGLT 592
                 689*********997 PP

>> EF-hand_1  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.3   6.8e-06      0.01       2      28 ..      10      36 ..       9      37 .. 0.92
   2 !   23.0   0.0   2.4e-08   3.6e-05       6      26 ..      50      70 ..      47      73 .. 0.91

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 6.8e-06
                HHHHHHHHTTTSSSEEEHHHHHHHHHH CS
   EF-hand_1  2 lkeiFrefDkDgdGkIdfeEfkellkk 28
                +++ F++fD+Dg G +d+ E+  +++ 
  KOO24696.1 10 WEQTFKMFDRDGGGDVDLRELGLMFRQ 36
                6789*******************9986 PP

  == domain 2  score: 23.0 bits;  conditional E-value: 2.4e-08
                HHHHTTTSSSEEEHHHHHHHH CS
   EF-hand_1  6 FrefDkDgdGkIdfeEfkell 26
                ++e+D Dg+G++dfeEf+ l+
  KOO24696.1 50 IEEVDADGSGTVDFEEFCCLM 70
                799***************999 PP

>> EF-hand_7  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.3   0.2     8e-12   1.2e-08       6      70 ..      12      70 ..       8      71 .. 0.93

  Alignments for each domain:
  == domain 1  score: 35.3 bits;  conditional E-value: 8e-12
   EF-hand_7  6 eaFkelDtdgdgyldkeellrllrkifqgagegsklsdeelellfkefDtdkdGvisfdEFlkly 70
                + Fk++D+dg g +d +el  ++r        g  +++ ++ ll++e+D d++G+++f+EF+ l+
  KOO24696.1 12 QTFKMFDRDGGGDVDLRELGLMFR------QLGQTPTERQMLLLIEEVDADGSGTVDFEEFCCLM 70
                56******************8999......788888999***********************998 PP

>> EF-hand_6  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.0   0.3   1.2e-06    0.0018       2      31 .]      10      38 ..       9      40 .. 0.90
   2 !   11.4   0.0   0.00017      0.25       9      26 ..      53      70 ..      50      79 .. 0.83

  Alignments for each domain:
  == domain 1  score: 18.0 bits;  conditional E-value: 1.2e-06
   EF-hand_6  2 lreaFklfDkdgdGkidaeElrkalrkalg 31
                +++ Fk+fD+dg G +d  El  ++r  lg
  KOO24696.1 10 WEQTFKMFDRDGGGDVDLRELGLMFR-QLG 38
                5689*********************9.455 PP

  == domain 2  score: 11.4 bits;  conditional E-value: 0.00017
   EF-hand_6  9 fDkdgdGkidaeElrkal 26
                 D dg+G++d+eE+  ++
  KOO24696.1 53 VDADGSGTVDFEEFCCLM 70
                69************8744 PP

>> EF-hand_9  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.3   0.0   1.9e-08   2.9e-05       1      63 [.      11      71 ..      11      73 .. 0.96

  Alignments for each domain:
  == domain 1  score: 24.3 bits;  conditional E-value: 1.9e-08
   EF-hand_9  1 etvFevcDtqktGrVpvsrlidyLravtaqdpeeseLeelakelDPdgedasvdldtflrvmr 63
                e +F+++D++  G V + +l  + r+ ++ +p+e ++  l +e+D dg  ++vd++ f+  m 
  KOO24696.1 11 EQTFKMFDRDGGGDVDLRELGLMFRQLGQ-TPTERQMLLLIEEVDADGS-GTVDFEEFCCLML 71
                579**************************.*******************.*********9995 PP

>> EF-hand_5  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.4   0.6     0.001       1.5       3      22 ..      12      31 ..      11      34 .. 0.89
   2 !   14.1   0.0   1.6e-05     0.025       6      21 ..      51      66 ..      49      73 .. 0.92
   3 ?   -3.4   0.0       5.5   8.2e+03      16      22 ..     162     168 ..     161     170 .. 0.80

  Alignments for each domain:
  == domain 1  score: 8.4 bits;  conditional E-value: 0.001
                HHHHHH-SS-SSCE-HHHHH CS
   EF-hand_5  3 dtFqaiDlNgDGkIskeELk 22
                +tF+++D +g G ++  EL 
  KOO24696.1 12 QTFKMFDRDGGGDVDLRELG 31
                69****************96 PP

  == domain 2  score: 14.1 bits;  conditional E-value: 1.6e-05
                HHH-SS-SSCE-HHHH CS
   EF-hand_5  6 qaiDlNgDGkIskeEL 21
                +++D++g+G++++eE+
  KOO24696.1 51 EEVDADGSGTVDFEEF 66
                679************9 PP

  == domain 3  score: -3.4 bits;  conditional E-value: 5.5
                 E-HHHHH CS
   EF-hand_5  16 IskeELk 22 
                 +s++EL 
  KOO24696.1 162 LSRDELL 168
                 89***95 PP

>> EF-hand_8  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   0.2      0.84   1.3e+03      32      47 ..      14      29 ..      14      36 .. 0.86
   2 !   21.7   0.6   8.7e-08   0.00013      15      55 .]      35      73 ..      21      73 .. 0.82

  Alignments for each domain:
  == domain 1  score: -0.6 bits;  conditional E-value: 0.84
   EF-hand_8 32 frefDtdgdGkisfeE 47
                f+ fD+dg G +++ E
  KOO24696.1 14 FKMFDRDGGGDVDLRE 29
                788******9999877 PP

  == domain 2  score: 21.7 bits;  conditional E-value: 8.7e-08
   EF-hand_8 15 rilglkkglseeevdilfrefDtdgdGkisfeEFcvllerr 55
                r lg+    +e ++  l+ e+D dg+G+++feEFc l+ r+
  KOO24696.1 35 RQLGQT--PTERQMLLLIEEVDADGSGTVDFEEFCCLMLRQ 73
                667777..888888899******************999875 PP

>> LRR_1  Leucine Rich Repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.0       4.9   7.3e+03       3      12 ..     145     154 ..     145     174 .. 0.78
   2 ?    1.2   0.0      0.59   8.9e+02       2      12 ..     240     250 ..     239     268 .. 0.74
   3 ?   -0.3   0.2       1.9   2.8e+03       2      13 ..     294     310 ..     294     322 .. 0.70
   4 ?   -1.2   0.0       3.6   5.4e+03       1      12 [.     483     493 ..     483     503 .. 0.70
   5 !    7.6   0.0    0.0048       7.2       2      20 ..     551     569 ..     550     572 .. 0.93
   6 ?    5.4   0.0     0.024        37       1      22 [.     580     611 ..     580     612 .. 0.84

  Alignments for each domain:
  == domain 1  score: -1.6 bits;  conditional E-value: 4.9
       LRR_1   3 rhLdLsnnpl 12 
                 ++ dL+nn +
  KOO24696.1 145 KYVDLTNNVI 154
                 6789***987 PP

  == domain 2  score: 1.2 bits;  conditional E-value: 0.59
       LRR_1   2 LrhLdLsnnpl 12 
                 L+  dLs+n++
  KOO24696.1 240 LTAVDLSGNNI 250
                 8889*****98 PP

  == domain 3  score: -0.3 bits;  conditional E-value: 1.9
       LRR_1   2 LrhLdLsnnpl.....l 13 
                 L++L L +np+     +
  KOO24696.1 294 LKVLLLDDNPIpaqlaI 310
                 899*******8655553 PP

  == domain 4  score: -1.2 bits;  conditional E-value: 3.6
       LRR_1   1 nLrhLdLsnnpl 12 
                 +L++L+L ++++
  KOO24696.1 483 SLKRLYL-GCRI 493
                 69****9.5555 PP

  == domain 5  score: 7.6 bits;  conditional E-value: 0.0048
       LRR_1   2 LrhLdLsnnpllglppnsf 20 
                 Lr+L Ls+n++lg ++++f
  KOO24696.1 551 LRELRLSGNHGLGGGAACF 569
                 9**************9999 PP

  == domain 6  score: 5.4 bits;  conditional E-value: 0.024
       LRR_1   1 nLrhLdLsnnpl..........lglppnsfqn 22 
                 +Lr+L+L ++ l          ++ + ++++ 
  KOO24696.1 580 SLRVLHLDGCGLtkmdmgslvdICHEVWCLHE 611
                 69*********988888888888888888876 PP

>> SAM_2  SAM domain (Sterile alpha motif)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.0       3.6   5.3e+03      28      45 ..     151     168 ..     149     176 .. 0.80
   2 ?   -3.6   0.0       8.4   1.3e+04      45      54 ..     494     503 ..     476     504 .. 0.74
   3 !   15.9   0.0   7.1e-06     0.011       3      65 ..     699     759 ..     697     760 .. 0.93

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 3.6
                 TTCSHHHHHTTSCHHHHH CS
       SAM_2  28 agitgaelllrlteedLk 45 
                 +++  ++++ +l+ ++L 
  KOO24696.1 151 NNVIQCRAIDQLSRDELL 168
                 78888999*******995 PP

  == domain 2  score: -3.6 bits;  conditional E-value: 8.4
                 HHTTHHHHHH CS
       SAM_2  45 krlGitsvgh 54 
                  ++G+++++h
  KOO24696.1 494 GDMGVENLCH 503
                 4899999998 PP

  == domain 3  score: 15.9 bits;  conditional E-value: 7.1e-06
                 GHHHHHHHHHHHHTTTGGGHHHHHHTTCSHHHHHTTSCHHHHHHTTHHHHHHHHHHHHHHHHH CS
       SAM_2   3 swsledvaeWLrsiglkqytdnFrdagitgaelllrlteedLkrlGitsvghrkkilkkiqel 65 
                  w + + a+++ + g+++y+  F   ++ g  +l+ lt   L++lG++   ++  i+ +i++l
  KOO24696.1 699 RWQSASCAQFVVNAGFPHYKSTFA-FNLRG-PMLATLTTASLTQLGVHEHREQIAIMEAIRSL 759
                 69999******************7.67999.9***************************9987 PP

>> LRR_4  Leucine Rich repeats (2 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.7   0.0     0.029        44      19      34 ..     234     249 ..     210     252 .. 0.68
   2 ?   -3.1   0.0       8.2   1.2e+04       3      10 ..     428     435 ..     426     437 .. 0.59
   3 ?    1.1   0.0      0.41   6.1e+02      22      39 ..     481     496 ..     473     507 .. 0.76
   4 ?    1.2   0.0      0.37   5.5e+02       2      30 ..     483     517 ..     482     524 .. 0.54
   5 ?    3.6   0.1     0.063        94       3      36 ..     551     591 ..     550     599 .. 0.57

  Alignments for each domain:
  == domain 1  score: 4.7 bits;  conditional E-value: 0.029
                 HHH-TT--EEE-.-S- CS
       LRR_4  19 leklpnLkeLdLsgNn 34 
                 l+++++L+ +dLsgNn
  KOO24696.1 234 LRQNTHLTAVDLSGNN 249
                 4578888888888884 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 8.2
                 --EEE--S CS
       LRR_4   3 LevLdLsn 10 
                 L++L+L++
  KOO24696.1 428 LQSLHLGG 435
                 66666665 PP

  == domain 3  score: 1.1 bits;  conditional E-value: 0.41
                 -TT--EEE-.-S-----G CS
       LRR_4  22 lpnLkeLdLsgNnlitdl 39 
                 + +Lk L+L g+ +i+d 
  KOO24696.1 481 NRSLKRLYL-GC-RIGDM 496
                 567888888.88.77665 PP

  == domain 4  score: 1.2 bits;  conditional E-value: 0.37
                 S--EEE--SS---E-S-HH......H.-TT--EEE- CS
       LRR_4   2 nLevLdLsnNqltdiplle......k.lpnLkeLdL 30 
                 +L+ L+L+ +++ d +  +      +  + L++L+L
  KOO24696.1 483 SLKRLYLG-CRIGDMGVENlchairSpGTALEVLHL 517
                 56666776.466665553322333333455666655 PP

  == domain 5  score: 3.6 bits;  conditional E-value: 0.063
                 --EEE--SS-........--E-S-HHH-TT--EEE-.-S--- CS
       LRR_4   3 LevLdLsnNq........ltdiplleklpnLkeLdLsgNnli 36 
                 L++L Ls+N+           ++ l+   +L++L+L g+  +
  KOO24696.1 551 LRELRLSGNHglgggaacFAILGALQAHQSLRVLHLDGC-GL 591
                 677777777665555555223333333666777777666.44 PP

>> SAM_1  SAM domain (Sterile alpha motif)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.7   0.0       0.5   7.4e+02      19      43 ..     145     168 ..     142     177 .. 0.85
   2 !   13.0   0.0   7.1e-05      0.11       3      57 ..     700     751 ..     698     759 .. 0.80

  Alignments for each domain:
  == domain 1  score: 0.7 bits;  conditional E-value: 0.5
                 GGHHHHHTTTSSHHHHTTSCHHHHH CS
       SAM_1  19 qYadlFrageidgdaLlllteddLe 43 
                 +Y+dl  ++ i ++a+ +l+ d+L+
  KOO24696.1 145 KYVDLT-NNVIQCRAIDQLSRDELL 168
                 677777.999*************85 PP

  == domain 2  score: 13.0 bits;  conditional E-value: 7.1e-05
                 TTHSSHHHHHHHTTSGGGHHHHHTTTSSHHHHTTSCHHHHHHCTTTSHHHHHHHH CS
       SAM_1   3 wsvedVgeWLesiglgqYadlFrageidgdaLlllteddLeklgvtllGHrkkIl 57 
                 w   + +++    g+++Y+++F+ +   g +L++lt   L +lgv    Hr+ I+
  KOO24696.1 700 WQSASCAQFVVNAGFPHYKSTFAFNL-RGPMLATLTTASLTQLGVHE--HREQIA 751
                 7777788889999*********8888.9*****************88..665543 PP

>> UPF0561  Uncharacterised protein family UPF0561
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   0.00016      0.24      18     114 ..     373     470 ..     363     475 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 0.00016
     UPF0561  18 mshgflrhirrnqiarddydkevkqak.ekqrrrhtttprrprrpdlqvylprsrdgsepgsnaeaeesnessssteaettgvelfwldyeadsgdit 114
                 +sh  ++h+r++   r d    v  ak ek++    t+ r           p s   s + + ++a + +  + ++  + +g++l +l    d+gd+ 
  KOO24696.1 373 LSHAHVHHLRKELNDRKDKASVVFSAKkEKEKAERETAAREAAAAAATASMPPSALQSLHLGGTQAGNATAGACAAALKLPGARLECLCISGDAGDVG 470
                 79*****************99999865166666666667777777888889999999999999999999999999999999****9999999999986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (796 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       726  (0.0404931); expected 358.6 (0.02)
Passed bias filter:                      529  (0.0295053); expected 358.6 (0.02)
Passed Vit filter:                        49  (0.002733); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.69u 0.30s 00:00:00.99 Elapsed: 00:00:00.46
# Mc/sec: 5229.55
//
Query:       KOO24697.1  [L=453]
Description: amino acid transporter [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    8.5e-64  215.8  15.7    1.5e-63  214.9  15.7    1.4  1  Aa_trans      Transmembrane amino acid transporter protein
    1.4e-07   31.0   6.1    3.3e-07   29.7   6.1    1.6  1  Trp_Tyr_perm  Tryptophan/tyrosine permease family


Domain annotation for each model (and alignments):
>> Aa_trans  Transmembrane amino acid transporter protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  214.9  15.7   1.7e-67   1.5e-63       2     378 ..      23     425 ..      22     451 .. 0.84

  Alignments for each domain:
  == domain 1  score: 214.9 bits;  conditional E-value: 1.7e-67
    Aa_trans   2 tssalsavlnlikaivGaGvLaLPyAfkqlGlivGlillllvallslytlllLvkcsktlasgkrnksYgdlg...yrllG.pkgkliidlailvqlfG 96 
                 ++s+  ++++l+++i GaG+L+LP+Af++ G  +G+++l+l+a +s+ +l lL++c++++   ++   + d++      lG +++  +id   +++++G
  KOO24697.1  23 KGSVEAGTAVLANTILGAGMLGLPFAFASCGFALGPLMLMLFATCSMSALILLSRCADKVG-REQFPIFYDVAslaGNKLGlTNVGTVIDCFVAIKCLG 120
                 5788999****************************************************97.6777777787777744444244566************ PP

    Aa_trans  97 vgvsyliligdllpaifesffdt.lllsnvyfilisaliiipLslipnlskLsylSllalvsslyyivilvlvvaelvklelkgvseetv......kka 188
                 v++syli++gd++p+ +esf    +ll++++++l +  i   L+ ++++s+L+ +Sl+al+++l+++ ++ l+ ++    ++  +  e+       +  
  KOO24697.1 121 VATSYLIVVGDSIPKALESFGVVgMLLNRTVWSLWALCIGGSLACMKDISSLKPFSLIALSCVLCIVFLITLFAFKVFDPCADHILPEDGpcrgkiELV 219
                 ******************975547888*************************************97555555555555555555544444677667788 PP

    Aa_trans 189 sklkglflaigiivFAftghavlleiqnelk..........dpskfk...kmtkvlllsiilatvlyilvGlvGYltFGnevkgnillnlpkssilivi 274
                 ++  +++ a++ +vF++t+h +++ei n+l+          dp+  k   k+ +++  ++ la+ +y+++G +GY+tFGn v  n+l ++p+s  + ++
  KOO24697.1 220 TEPITIIRALPLFVFSYTCHQNIFEIGNDLHraasdgkfvpDPQG-KnpdKIIRIVFQAVGLAFCVYMVLGSAGYYTFGNLVTKNVLVSYPESY-VVAV 316
                 88889************************9833333322223333.246778899999999******************************998.**** PP

    Aa_trans 275 vnlllvlhlilsfplqlhplrqvvenllikk.....eavagasekeapkskllrlvirlllvvityliAlsvpslakvlslvGatsstplsfilPalfh 368
                 +++++ l ++  +plq+hp+r+ + +++           +  ++ ++p   +l  +i+++++++t ++A+ v  l+ vls+vGat+st++s+i P+   
  KOO24697.1 317 ARIAISLVVTACYPLQAHPARKCLTTIVGVArgaqgTLLEDLKNPNTPEGEKLMRWITSFVILFTGCVAIAVHDLGLVLSVVGATGSTMISYIVPGASS 415
                 ****************************9989999878888899999999999*******************************************999 PP

    Aa_trans 369 lkliktekks 378
                 + l++ +  +
  KOO24697.1 416 FILLEGPQRW 425
                 9988777533 PP

>> Trp_Tyr_perm  Tryptophan/tyrosine permease family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.7   6.1   3.6e-11   3.3e-07       4     206 ..      25     245 ..      23     258 .. 0.69

  Alignments for each domain:
  == domain 1  score: 29.7 bits;  conditional E-value: 3.6e-11
  Trp_Tyr_perm   4 sllggvlliagtviGaGmlalPvatagagfipsllllilswvlmlasgllllEvllaake.....easfttlakkllG..kkgniivalvllfllyi 93 
                   s+ +g+ ++a t+ GaGml+lP a a  gf    l+l+l + +++++ +ll  +  ++          +++la + lG  ++g +i ++v +  l +
    KOO24697.1  25 SVEAGTAVLANTILGAGMLGLPFAFASCGFALGPLMLMLFATCSMSALILLSRCADKVGReqfpiFYDVASLAGNKLGltNVGTVIDCFVAIKCLGV 121
                   56789***************************************99999999999999887777767889999888885477899999998888876 PP

  Trp_Tyr_perm  94 LlvAyisggGsilselleeasg..ialsarlavliftlvlgalvvlstk.avdrinrv..llflklvafvlll.alllskvksdvLls.....aksd 179
                    +  y+   G+ + ++le+     + l++++  l    + g+l +++       ++ +   ++l +v+++ l+ + ++   + ++L +     +k +
    KOO24697.1 122 AT-SYLIVVGDSIPKALESFGVvgMLLNRTVWSLWALCIGGSLACMKDIsSLKPFSLIalSCVLCIVFLITLFaFKVFDPCADHILPEdgpcrGKIE 217
                   55.5666666666676777665334455555555566666677766543233333322102233333333333034445556666666888775545 PP

  Trp_Tyr_perm 180 t.skvslvlsalPvlllsfGFhgivpsl 206
                     ++  +++ alP+++ s+  h+++  +
    KOO24697.1 218 LvTEPITIIRALPLFVFSYTCHQNIFEI 245
                   41455578899********999998665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (453 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       538  (0.0300073); expected 358.6 (0.02)
Passed bias filter:                      262  (0.0146132); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.47u 0.27s 00:00:00.74 Elapsed: 00:00:00.39
# Mc/sec: 3494.07
//
Query:       KOO24698.1  [L=102]
Description: hypothetical protein Ctob_008932 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.11   12.2   0.0       0.14   11.9   0.0    1.1  1  DUF1780   Putative endonuclease, protein of unknown function 


Domain annotation for each model (and alignments):
>> DUF1780  Putative endonuclease, protein of unknown function (DUF1780)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   7.6e-06      0.14      78     119 ..      38      77 ..      22      83 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 7.6e-06
                 ----------------------------EEEEHHHHHHTTHH CS
     DUF1780  78 lneewreelerrrsalslaqlvrreerpkripaaelqarlap 119
                   eewr+ l rr +a+ l+  +  + +pk + aaelqar  p
  KOO24698.1  38 RTEEWRAPLPRRVEAY-LRA-LPADFHPKSLKAAELQARRGP 77 
                 479*******999886.554.57899************9876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (102 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       289  (0.0161191); expected 358.6 (0.02)
Passed bias filter:                      246  (0.0137208); expected 358.6 (0.02)
Passed Vit filter:                        10  (0.000557756); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.32u 0.26s 00:00:00.58 Elapsed: 00:00:00.39
# Mc/sec: 784.08
//
Query:       KOO24699.1  [L=272]
Description: hypothetical protein Ctob_008933 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    8.8e-08   32.4   0.0    1.3e-07   31.8   0.0    1.2  1  Nucleotid_trans  Nucleotide-diphospho-sugar transferase


Domain annotation for each model (and alignments):
>> Nucleotid_trans  Nucleotide-diphospho-sugar transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.8   0.0   7.5e-12   1.3e-07       5     101 ..      28     131 ..      25     158 .. 0.87

  Alignments for each domain:
  == domain 1  score: 31.8 bits;  conditional E-value: 7.5e-12
  Nucleotid_trans   5 nllvvAlDeealerckelgvpvlyltsk.....gkdsakkdeefksktykkmswrkvrlllellklGynvllsDvDvvWlrnpfpllky..eda 91 
                      ++lv+A D+ +++r+ e+ + v  + ++     + +s+    +f ++      +rkv l + +l+ G nvl +D D+vW+ +p pl+k+  +d 
       KOO24699.1  28 HMLVLAPDRPVCQRLWEVLPDVACVWWPsqwarQRPSSLYNDNFPRQALALYEARKVLLERLVLDHGLNVLHLDGDTVWFADPYPLFKSafKDR 121
                      899************999888777777778988777777888999999999999*********************************556699* PP

  Nucleotid_trans  92 DvlvssDsld 101
                       +++++D+  
       KOO24699.1 122 QLVFQQDNPF 131
                      ******9864 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (272 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       218  (0.0121591); expected 358.6 (0.02)
Passed bias filter:                      191  (0.0106531); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.27s 00:00:00.66 Elapsed: 00:00:00.40
# Mc/sec: 2017.17
//
Query:       KOO24700.1  [L=814]
Description: ion channel dmi1- chloroplast expressed [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.2e-29  102.3   0.0    7.6e-28   96.5   0.0    2.4  2  Castor_Poll_mid  Castor and Pollux, part of voltage-gated ion
     0.0064   16.3   0.0      0.033   14.0   0.0    2.3  1  TrkA_C           TrkA-C domain
  ------ inclusion threshold ------
      0.024   14.9   1.9      0.056   13.7   0.2    2.4  2  TrkA_N           TrkA-N domain


Domain annotation for each model (and alignments):
>> Castor_Poll_mid  Castor and Pollux, part of voltage-gated ion channel
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   96.5   0.0   1.3e-31   7.6e-28       1      96 [.     190     289 ..     190     296 .. 0.93
   2 ?    3.2   0.0     0.014        85      50      95 ..     759     806 ..     735     813 .. 0.65

  Alignments for each domain:
  == domain 1  score: 96.5 bits;  conditional E-value: 1.3e-31
  Castor_Poll_mid   1 edvisrllvqcsrqkGLakiyedlLnfeknefylkelpelegkkyedvllafqeavviGikvassg....kiylnPeddevlqegdkllviaed 90 
                      +d+i+rl++qc+rq+ La++y++l++f++ efy    p+l g+ ++ vl++f++a+++G+ + ++g     ++lnP+dd++l+e+d+l+viaed
       KOO24700.1 190 HDIIGRLMIQCARQPNLAEVYHKLIGFDGMEFYHAPQPALVGQPWRAVLTSFEHAIPVGLLQPREGggraALHLNPDDDYILREQDELIVIAED 283
                      79**********************************************************999984344469********************** PP

  Castor_Poll_mid  91 ddtkkp 96 
                      ddt+++
       KOO24700.1 284 DDTYTA 289
                      ***986 PP

  == domain 2  score: 3.2 bits;  conditional E-value: 0.014
  Castor_Poll_mid  50 lafqeavviGikvass.gkiylnPedde...vlqegdkllviaedddtkk 95 
                       +    + iG    +  g+++lnP d +   + ++gd l+v+++ ++++ 
       KOO24700.1 759 ARSRGDIAIGY--LRGgGEVQLNPPDKNqslLWTKGDFLVVLGDASTKRD 806
                      44445566666..44449*****987542223478999999998877664 PP

>> TrkA_C  TrkA-C domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.0   0.0   5.6e-06     0.033      37      62 ..     261     286 ..     224     289 .. 0.80

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 5.6e-06
                 EEES--TT-B--TT-EEEEEEEHHHH CS
      TrkA_C  37 eliipsgdtvLeeGDvllvvgspsdl 62 
                   ++p++d++L+e D+l+v+++++d+
  KOO24700.1 261 LHLNPDDDYILREQDELIVIAEDDDT 286
                 6789******************9985 PP

>> TrkA_N  TrkA-N domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.2   9.3e-06     0.056      29     106 ..      75     166 ..      44     173 .. 0.78
   2 ?   -1.2   0.1      0.39   2.3e+03      68      95 ..     414     438 ..     392     456 .. 0.71

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 9.3e-06
                 SSHHHHHHHHHTTSE.....EEES-TTSHHHHHHTTGGGESEEEE-SS.......SHHHHHHHHHHHHHHTSS..SEEEEEESSGGGHHHHH CS
      TrkA_N  29 kdeerveelreegle.....vvvgdatdeevLeeagiekadaviaatg.......ddeanilavllakelnpk..kkiiaraqdpehaellk 106
                  de +++el++e+++     + +gd+ + + L++  +++a+a++ +++       +d+  + avl+++   ++   +i+++ +d +++ ll 
  KOO24700.1  75 MDEMVANELSAEEMRgtrvvCRHGDPVSVASLRKVAAQTARAIVFLANervlpdlSDALAVRAVLALRAGLEHlsGHIVVELRDCDNQPLLD 166
                 56667777777763333433667*************************9***9999999999999998877776777999999988888775 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 0.39
                 E-SSSHHHHHHHHHHHHHHTSSSEEEEE CS
      TrkA_N  68 aatgddeanilavllakelnpkkkiiar 95 
                 a+  +d +n+ ++ll+++++     +ar
  KOO24700.1 414 ATSASDSKNLTTLLLVRDIRRC---MAR 438
                 5666999999999999986654...333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (814 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       531  (0.0296168); expected 358.6 (0.02)
Passed bias filter:                      379  (0.0211389); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.66u 0.27s 00:00:00.93 Elapsed: 00:00:00.45
# Mc/sec: 5433.40
//
Query:       KOO24701.1  [L=123]
Description: hypothetical protein Ctob_008937 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (123 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       375  (0.0209158); expected 358.6 (0.02)
Passed bias filter:                      196  (0.010932); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.25s 00:00:00.63 Elapsed: 00:00:00.41
# Mc/sec: 900.49
//
Query:       KOO24702.1  [L=194]
Description: hypothetical protein Ctob_008934 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.16   12.2   1.2        6.1    7.0   0.0    2.2  2  Prok-E2_C  Prokaryotic E2 family C


Domain annotation for each model (and alignments):
>> Prok-E2_C  Prokaryotic E2 family C
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.1   0.2    0.0027        48     107     130 ..      21      44 ..       9      47 .. 0.87
   2 ?    7.0   0.0   0.00034       6.1       3      55 ..      92     147 ..      90     158 .. 0.74

  Alignments for each domain:
  == domain 1  score: 4.1 bits;  conditional E-value: 0.0027
   Prok-E2_C 107 ssllaygagaaaciaaanlfrtif 130
                 +++ a+g gaaa +a a  +r i+
  KOO24702.1  21 AAQSAFGPGAAATMAMAGGMRSIM 44 
                 56789**********999999886 PP

  == domain 2  score: 7.0 bits;  conditional E-value: 0.00034
   Prok-E2_C   3 deqaascategrasldllvrl...larlypvlallplgeeakklakalerlaksin 55 
                 d q+a  a+ g+  + l   l   + r   v+ +lp+g + k l +a + la s+ 
  KOO24702.1  92 DSQTALAACSGKNDFILFEPLdeaMRRGQAVVLVLPMGASRKELNQAQAYLAESLA 147
                 6677666667777665544332226788899****************999999986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (194 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       456  (0.0254337); expected 358.6 (0.02)
Passed bias filter:                      389  (0.0216967); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.25s 00:00:00.65 Elapsed: 00:00:00.40
# Mc/sec: 1468.72
//
Query:       KOO24703.1  [L=442]
Description: NHL repeat containing protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.7e-07   29.9   9.0       0.01   15.9   0.0    5.9  6  NHL        NHL repeat
     0.0022   17.3   0.0     0.0071   15.7   0.0    1.8  2  Lactonase  Lactonase, 7-bladed beta-propeller
  ------ inclusion threshold ------
        0.1   13.1   3.4        2.1    8.9   0.0    3.7  4  PQQ_3      PQQ-like domain


Domain annotation for each model (and alignments):
>> NHL  NHL repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.9   0.2    0.0025        15       5      17 ..     167     179 ..     166     183 .. 0.92
   2 ?    0.4   0.0      0.13   7.9e+02       1      10 [.     235     244 ..     235     248 .. 0.83
   3 ?    3.3   0.4     0.016        96      15      28 .]     266     279 ..     265     279 .. 0.89
   4 !   15.9   0.0   1.7e-06      0.01      12      28 .]     310     326 ..     303     326 .. 0.84
   5 !    4.1   0.0    0.0087        52       2      19 ..     343     361 ..     342     365 .. 0.81
   6 ?   -2.7   0.0       1.3   7.9e+03      15      20 ..     424     429 ..     423     431 .. 0.82

  Alignments for each domain:
  == domain 1  score: 5.9 bits;  conditional E-value: 0.0025
                 EEEEEETTTEEEE CS
         NHL   5 hGvavdsnGdiyV 17 
                 +Gvavd +G +yV
  KOO24703.1 167 RGVAVDRDGAVYV 179
                 69**********9 PP

  == domain 2  score: 0.4 bits;  conditional E-value: 0.13
                 BSSEEEEEEE CS
         NHL   1 fnyPhGvavd 10 
                 +++P+G+++ 
  KOO24703.1 235 LAFPSGLCLH 244
                 689*****96 PP

  == domain 3  score: 3.3 bits;  conditional E-value: 0.016
                 EEEEECCCTEEEEE CS
         NHL  15 iyVaDsenhrvqvF 28 
                 ++V+D  nhrv+++
  KOO24703.1 266 LFVSDVFNHRVVQY 279
                 7899*******987 PP

  == domain 4  score: 15.9 bits;  conditional E-value: 1.7e-06
                 TTEEEEEECCCTEEEEE CS
         NHL  12 nGdiyVaDsenhrvqvF 28 
                 +  +yVaD++n+r+ +F
  KOO24703.1 310 GRTLYVADNGNNRISCF 326
                 6789************9 PP

  == domain 5  score: 4.1 bits;  conditional E-value: 0.0087
                 SSEEEEEEE.TTTEEEEEE CS
         NHL   2 nyPhGvavd.snGdiyVaD 19 
                  +P++va++ s+  ++V++
  KOO24703.1 343 VQPRDVALVrSGEAVIVSE 361
                 69*******8888888876 PP

  == domain 6  score: -2.7 bits;  conditional E-value: 1.3
                 EEEEEC CS
         NHL  15 iyVaDs 20 
                 ++VaD+
  KOO24703.1 424 VFVADN 429
                 89***7 PP

>> Lactonase  Lactonase, 7-bladed beta-propeller
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.0      0.41   2.5e+03      27      50 ..      83     106 ..      75     133 .. 0.72
   2 !   15.7   0.0   1.2e-06    0.0071     252     310 ..     307     362 ..     305     381 .. 0.84

  Alignments for each domain:
  == domain 1  score: -2.6 bits;  conditional E-value: 0.41
                 EEEEEEEEESS---SEEE-TTSSE CS
   Lactonase  27 ltplelvaelenPsyLalspdgkt 50 
                   pl l+++l++P yLa  +dg+ 
  KOO24703.1  83 AAPLPLTDKLAQPLYLAARDDGSL 106
                 456666777888888887555543 PP

  == domain 2  score: 15.7 bits;  conditional E-value: 1.2e-06
                 -TTSSEEEEEETSSTEEEEEEE-TTT--EEEEEEEE-SSS.--EEEE-TTSSEEEEEET CS
   Lactonase 252 spdgkflyvSnRgadsiavfavdeadgtltlveevstegkfPRdfaldpsgklllvanq 310
                 ++ g+ lyv++ g++ i++f++ +++   + +++ +    +PRd al +sg+ ++v++ 
  KOO24703.1 307 ASHGRTLYVADNGNNRISCFDI-PSGRARRPIGQGWL--VQPRDVALVRSGEAVIVSEC 362
                 678*******************.99888888888888..78***************864 PP

>> PQQ_3  PQQ-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.0       1.2   7.2e+03      25      35 ..      97     108 ..      88     113 .. 0.68
   2 ?    2.6   0.1     0.035   2.1e+02      13      29 ..     165     182 ..     156     185 .. 0.71
   3 ?   -3.1   0.0       2.2   1.3e+04      21      38 ..     263     281 ..     256     282 .. 0.71
   4 ?    8.9   0.0   0.00035       2.1      15      38 ..     304     328 ..     292     330 .. 0.87

  Alignments for each domain:
  == domain 1  score: -2.3 bits;  conditional E-value: 1.2
       PQQ_3  25 yvgtg.dGtlyA 35 
                 y ++  dG+l+A
  KOO24703.1  97 YLAARdDGSLVA 108
                 555555666666 PP

  == domain 2  score: 2.6 bits;  conditional E-value: 0.035
       PQQ_3  13 vnsspavd.gglvyvgtg 29 
                 + +++avd +g vyv+  
  KOO24703.1 165 ALRGVAVDrDGAVYVVHR 182
                 447889987899999875 PP

  == domain 3  score: -3.1 bits;  conditional E-value: 2.2
       PQQ_3  21 gglvyvgtg.dGtlyAlDa 38 
                 g  ++v++  +++++ +D+
  KOO24703.1 263 GSSLFVSDVfNHRVVQYDT 281
                 4457777778888888875 PP

  == domain 4  score: 8.9 bits;  conditional E-value: 0.00035
       PQQ_3  15 sspavdgglvyvgtg.dGtlyAlDa 38 
                 +++a  g+++yv++  ++++ ++D 
  KOO24703.1 304 YGLASHGRTLYVADNgNNRISCFDI 328
                 567999*****************95 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (442 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       257  (0.0143343); expected 358.6 (0.02)
Passed bias filter:                      207  (0.0115455); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.47u 0.20s 00:00:00.67 Elapsed: 00:00:00.38
# Mc/sec: 3480.45
//
Query:       KOO24704.1  [L=324]
Description: leucine-rich repeat:na-ca exchanger integrin-beta4: ig [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      3e-10   40.2   1.7    2.5e-05   24.5   0.0    2.7  3  LRR_4     Leucine Rich repeats (2 copies)
    2.2e-08   33.8   0.1    5.1e-08   32.6   0.1    1.6  1  LRR_8     Leucine rich repeat
     0.0031   17.4   0.3       0.28   11.3   0.0    3.5  3  LRR_6     Leucine Rich repeat
  ------ inclusion threshold ------
      0.013   16.0   0.5       0.46   11.2   0.0    3.3  3  LRR_1     Leucine Rich Repeat
      0.061   13.2   0.4       0.13   12.1   0.4    1.5  1  DUF5362   Family of unknown function (DUF5362)
        0.1   11.3   0.2       0.14   10.8   0.2    1.1  1  TRP       Transient receptor potential (TRP) ion channel


Domain annotation for each model (and alignments):
>> LRR_4  Leucine Rich repeats (2 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.5   0.4   3.7e-08   0.00011       9      37 ..      95     124 ..      90     130 .. 0.82
   2 !   24.5   0.0   8.4e-09   2.5e-05       1      32 [.     110     143 ..     110     150 .. 0.87
   3 ?   -2.6   0.1       2.9   8.7e+03       6      12 ..     171     177 ..     171     180 .. 0.72

  Alignments for each domain:
  == domain 1  score: 22.5 bits;  conditional E-value: 3.7e-08
                 -SS---E-S-.HHH-TT--EEE-.-S---- CS
       LRR_4   9 snNqltdipl.leklpnLkeLdLsgNnlit 37 
                 snN + ++++ l  lp+L++LdLsgN l +
  KOO24704.1  95 SNNLIGSLDGaLCELPSLQHLDLSGNALTG 124
                 79********8555************4444 PP

  == domain 2  score: 24.5 bits;  conditional E-value: 8.4e-09
                 SS--EEE--SS---.E-S-HHH.-TT--EEE-.- CS
       LRR_4   1 pnLevLdLsnNqlt.dipllek.lpnLkeLdLsg 32 
                 p+L++LdLs+N lt ++p+ +   p L++LdL++
  KOO24704.1 110 PSLQHLDLSGNALTgSLPSAADcWPRLTYLDLTQ 143
                 79*****************8866*********55 PP

  == domain 3  score: -2.6 bits;  conditional E-value: 2.9
                 EE--SS- CS
       LRR_4   6 LdLsnNq 12 
                 L+L+nN 
  KOO24704.1 171 LHLANNA 177
                 7888886 PP

>> LRR_8  Leucine rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.6   0.1   1.7e-11   5.1e-08       7      59 ..      92     144 ..      88     145 .. 0.87

  Alignments for each domain:
  == domain 1  score: 32.6 bits;  conditional E-value: 1.7e-11
                 E-TTS-.-SEE-TTSSTT-TT--EEE--SS---GGGGGGGTT--S-.EEE--SS CS
       LRR_8   7 dLsnNr.ltslddeaFkglsnLkvLdLsnNllttlspgafsgLpsLrsLdLsgN 59 
                  L +N+ + sld    + l++L++LdLs N lt   p a ++ p+L++LdL+++
  KOO24704.1  92 LLPSNNlIGSLDGALCE-LPSLQHLDLSGNALTGSLPSAADCWPRLTYLDLTQT 144
                 55666659999998888.****************99***************976 PP

>> LRR_6  Leucine Rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.3   0.0   9.5e-05      0.28       3      17 ..     110     124 ..     108     125 .. 0.89
   2 ?    1.8   0.0      0.11   3.3e+02       4      12 ..     135     143 ..     134     154 .. 0.73
   3 ?   -1.1   0.0      0.94   2.8e+03       8      17 ..     171     180 ..     171     181 .. 0.90

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 9.5e-05
       LRR_6   3 thLteLdLsgNdIgD 17 
                 ++L++LdLsgN +++
  KOO24704.1 110 PSLQHLDLSGNALTG 124
                 79*********9986 PP

  == domain 2  score: 1.8 bits;  conditional E-value: 0.11
       LRR_6   4 hLteLdLsg 12 
                  Lt+LdL+ 
  KOO24704.1 135 RLTYLDLTQ 143
                 69*****86 PP

  == domain 3  score: -1.1 bits;  conditional E-value: 0.94
       LRR_6   8 LdLsgNdIgD 17 
                 L+L+ N ++D
  KOO24704.1 171 LHLANNAFDD 180
                 89****9999 PP

>> LRR_1  Leucine Rich Repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.0       2.8   8.5e+03       8      21 ..      94     107 ..      81     109 .. 0.66
   2 ?   11.2   0.0   0.00016      0.46       1      19 [.     111     129 ..     111     132 .. 0.85
   3 ?    0.7   0.0      0.43   1.3e+03       1      11 [.     135     145 ..     135     167 .. 0.78

  Alignments for each domain:
  == domain 1  score: -1.8 bits;  conditional E-value: 2.8
       LRR_1   8 snnpllglppnsfq 21 
                  +n+l+g ++ +++
  KOO24704.1  94 PSNNLIGSLDGALC 107
                 46677677766665 PP

  == domain 2  score: 11.2 bits;  conditional E-value: 0.00016
       LRR_1   1 nLrhLdLsnnpllglppns 19 
                 +L+hLdLs+n l+g +p++
  KOO24704.1 111 SLQHLDLSGNALTGSLPSA 129
                 69**********8887765 PP

  == domain 3  score: 0.7 bits;  conditional E-value: 0.43
       LRR_1   1 nLrhLdLsnnp 11 
                 +L++LdL++ +
  KOO24704.1 135 RLTYLDLTQTR 145
                 699****7654 PP

>> DUF5362  Family of unknown function (DUF5362)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.4   4.4e-05      0.13      13      39 ..     279     306 ..     273     310 .. 0.85

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 4.4e-05
     DUF5362  13 vlliilGaltcLsIigii.igvllIivg 39 
                  ++i++G l+ L+Iig +  g++lIi  
  KOO24704.1 279 TFMILVGHLQTLTIIGSMqLGWPLIIQE 306
                 689*************8747*****975 PP

>> TRP  Transient receptor potential (TRP) ion channel
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.2   4.8e-05      0.14       4      64 ..     244     306 ..     241     312 .. 0.78

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 4.8e-05
         TRP   4 vtaviaglallasnasavastl..gnsnaaahvaasvlslflyfQsvafigmlsvnyPpvlaa 64 
                 v ++ia++ ll+   + ++  +   ++++a+   a+++ l++ +Q++ +ig +++ +P +++ 
  KOO24704.1 244 VGCGIAFIVLLLMRLLGLYTRFmrDYPEHAKTHFATFMILVGHLQTLTIIGSMQLGWPLIIQE 306
                 556788888888666666644411456688888889***********************9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (324 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       485  (0.0270511); expected 358.6 (0.02)
Passed bias filter:                      366  (0.0204139); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.47u 0.24s 00:00:00.71 Elapsed: 00:00:00.42
# Mc/sec: 2314.38
//
Query:       KOO24705.1  [L=329]
Description: hypothetical protein Ctob_008939, partial [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (329 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1074  (0.059903); expected 358.6 (0.02)
Passed bias filter:                      654  (0.0364772); expected 358.6 (0.02)
Passed Vit filter:                        48  (0.00267723); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.50u 0.25s 00:00:00.75 Elapsed: 00:00:00.41
# Mc/sec: 2434.96
//
Query:       KOO24706.1  [L=460]
Description: cyclin-dependent kinase g-2-like protein, partial [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.1e-56  190.7   0.0      4e-56  190.3   0.0    1.1  1  Pkinase        Protein kinase domain
    9.6e-30  103.7   0.0    1.4e-29  103.2   0.0    1.1  1  Pkinase_Tyr    Protein tyrosine kinase
    1.8e-05   23.9   0.0    2.4e-05   23.4   0.0    1.1  1  Haspin_kinase  Haspin like kinase domain
    7.1e-05   22.0   0.2    0.00028   20.1   0.1    1.8  2  Seadorna_VP7   Seadornavirus VP7
    0.00017   21.0   0.1      0.015   14.7   0.1    2.3  2  Kinase-like    Kinase-like
    0.00024   20.7   0.0    0.00037   20.1   0.0    1.2  1  RIO1           RIO1 family
  ------ inclusion threshold ------
      0.029   14.3   0.2      0.065   13.1   0.2    1.6  1  APH            Phosphotransferase enzyme family
       0.24   10.7   0.0       0.37   10.1   0.0    1.2  1  Kdo            Lipopolysaccharide kinase (Kdo/WaaP) family


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  190.3   0.0   1.8e-59     4e-56       1     233 [.     174     411 ..     174     445 .. 0.89

  Alignments for each domain:
  == domain 1  score: 190.3 bits;  conditional E-value: 1.8e-59
                 EEEEEEEEEESSEEEEEEEETTTTEEEEEEEEECHCHCHHHH........HHHHHHHHHHHHHSCTTB--EEEEEEESSEEEEEEE--TTEBHHHHHH. CS
     Pkinase   1 yekleklGeGsfGkVykaveketgkivAvKkikkekakkkke........kkvlrEikilkklkhpnivrlyevfeekdelylvleyveggeladlle. 90 
                 ye+l  +G+G+f k+yka+++etg+ vA+K ++    +++ +         +++rE++il +++hpniv++ ev+ ++++++lv+e+v+ + l  lle 
  KOO24706.1 174 YENLGLVGRGAFNKIYKARHRETGEVVALKAMQLAALEQSGHvqgdegvaLEMMREMSILLSIRHPNIVTVHEVVMDPTQMFLVMELVDFD-LGLLLEh 271
                 678899**************************99988888778888899889*************************************87.6666663 PP

                 HHSS--HHHHHHHHHHHHHHHHHHHHTTEE-SS-SGGGEEEETTTEEEE-SGTTSEESSSSCS.BCTTTSCGGGS-HHHH.TTSCBSHHHHHHHHHHHH CS
     Pkinase  91 rkgslseeeakkiakqilegleylHskgiiHrDlKpeNiLidekgelKitDFGlakelesssk.ltsfvgtseYlAPEvl.keneyskkvDvWslGvil 187
                  k+ +se+++k +a q+l++l+ +H+  ++HrDlKp N+L+d++g+lK++DFGla++ +   k  t  v + +Y+APE+l +e+ y+++vD+Ws G+i+
  KOO24706.1 272 MKQPFSEAQVKCLAMQLLSALSAVHECFVLHRDLKPTNLLLDKNGVLKLCDFGLARRCSGFGKaCTPNVTSLWYRAPEILlGETVYGSAVDMWSFGCIF 370
                 4567*******************************************************9888677888899********999**************** PP

                 HHHHHSS-STTTSSHHHHHHHHHHTHHHHHHHCT.SHH...HHHTTS CS
     Pkinase 188 yelltgkppfsgekgkekvekeldqlekilkilg.etkeklpeasei 233
                 +e l   +p+   +g+     e+dq+ +i+k++g +++ ++p+  ++
  KOO24706.1 371 AEWLQLGEPLV--QGTG----EIDQINSIFKLVGtPSEYSWPKFPSL 411
                 **998777777..2444....8999999***9998788888887766 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  103.2   0.0   6.4e-33   1.4e-29       7     211 ..     180     386 ..     175     402 .. 0.83

  Alignments for each domain:
  == domain 1  score: 103.2 bits;  conditional E-value: 6.4e-33
                  EEEESSEEEEEEEEETTTTSSEEEEEEEEESTTSSHHH.........HHHHHHHHHHHHTS-BTTB--EEEEEESSSSEEEEEE--TTEBHHHHHHHT CS
  Pkinase_Tyr   7 lGeGafGkVvegtlkgekekkevkVavKtlkeeateee.........keelleeakimkklkhpnivkllgvctkeepllivteyvkgGdLlkfLrkk 95 
                  +G+Gaf k+++++ +    ++ + Va+K ++  a e++           e+++e++i+ +++hpniv ++ v+++  ++++v+e+v+  dL   L++ 
   KOO24706.1 180 VGRGAFNKIYKARHR----ETGEVVALKAMQLAALEQSghvqgdegvALEMMREMSILLSIRHPNIVTVHEVVMDPTQMFLVMELVDF-DLGLLLEHM 272
                  79***********99....7888899999864333332222222244679************************************87.777777777 PP

                  CTTTSBHHHHHHHHHHHHHHHHHHHHTTEEEST-SGGGEEEEETTEEEE-STTTHEETTTSSEEEETTSSTSGGGGS-HHHHHHSE.EEHHHHHHHHH CS
  Pkinase_Tyr  96 ekekltlkdllsfalqvAkGmeyLeskklvHrdlaarNvLlsenkvvkisDfGLardiekddeyvkkeeaklpvkWmapEslkekk.ftsksDvWsfG 192
                   k++++  ++ ++a+q+ ++++ +++  ++Hrdl   N Ll++n v k++DfGLar+   +   ++ + + +++ + apE+l  ++ + s+ D+WsfG
   KOO24706.1 273 -KQPFSEAQVKCLAMQLLSALSAVHECFVLHRDLKPTNLLLDKNGVLKLCDFGLARRC--SGFGKACTPNVTSLWYRAPEILLGETvYGSAVDMWSFG 367
                  .889******************************************************..33334455556666667***98755449********** PP

                  HHHHHHHTTSSGTTTTSHH CS
  Pkinase_Tyr 193 vllwEiftlgespypglkn 211
                   +  E ++lge  ++g  +
   KOO24706.1 368 CIFAEWLQLGEPLVQGTGE 386
                  **********987777654 PP

>> Haspin_kinase  Haspin like kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.4   0.0   1.1e-08   2.4e-05     108     256 ..     176     328 ..     143     342 .. 0.75

  Alignments for each domain:
  == domain 1  score: 23.4 bits;  conditional E-value: 1.1e-08
  Haspin_kinase 108 d....seklssevyqtke..kdkevvlKviplevledvtiskelslkelkslklvkgtypglllllqdkvlkekpdfyseqqlflvlllkd..kGt 195
                    +    +++ ++++y++++  + + v+lK + l +le    s +++  e   l++++   + ll + + +++  +  +++ +q+flv++l d   G 
     KOO24706.1 176 NlglvGRGAFNKIYKARHreTGEVVALKAMQLAALE---QSGHVQGDEGVALEMMREM-SILLSIRHPNIVTVHEVVMDPTQMFLVMELVDfdLGL 267
                    155568888999999998645566778888774443...3444444555555556665.4555555555555555677789*****99975227** PP

  Haspin_kinase 196 dLeev.klkswkqalsifwqivkiLyvaEtkfeFEHRdLhldniLvdknlnvtlidlklsRl 256
                     Le++ +  s +q++ +  q ++ L+++ + f + HRdL+  n L+dkn+   l+d+ l+R 
     KOO24706.1 268 LLEHMkQPFSEAQVKCLAMQLLSALSAVHECFVL-HRDLKPTNLLLDKNGVLKLCDFGLARR 328
                    *****667899*******************9987.*************************95 PP

>> Seadorna_VP7  Seadornavirus VP7
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   0.0      0.25   5.6e+02     134     197 ..     186     249 ..     183     259 .. 0.75
   2 !   20.1   0.1   1.2e-07   0.00028     126     186 ..     262     322 ..     252     326 .. 0.80

  Alignments for each domain:
  == domain 1  score: -0.6 bits;  conditional E-value: 0.25
  Seadorna_VP7 134 ekCykirvltvniivaglkdLmdfhsestnllhGDcnpenlmcDknGy.lklvDPvsLlertvvy 197
                   +k yk r   +  +va lk+++    e+++ + GD  +   m  ++   l +  P  +  + vv+
    KOO24706.1 186 NKIYKARHRETGEVVA-LKAMQLAALEQSGHVQGDEGVALEMMREMSIlLSIRHPNIVTVHEVVM 249
                   5778999999999999.*******99*********998876665555414555666555555655 PP

  == domain 2  score: 20.1 bits;  conditional E-value: 1.2e-07
  Seadorna_VP7 126 nyeyGiilekCykirvlt.vniivag.lkdLmdfhsestnllhGDcnpenlmcDknGylklvD 186
                   +++ G++le+  ++     v  + +  l++L  +h  + ++lh D +p nl+ DknG+lkl D
    KOO24706.1 262 DFDLGLLLEHMKQPFSEAqVKCLAMQlLSALSAVH--ECFVLHRDLKPTNLLLDKNGVLKLCD 322
                   58999999999988665414444443278899999..89**********************99 PP

>> Kinase-like  Kinase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.6   0.0    0.0075        17      19      91 ..     179     249 ..     172     254 .. 0.68
   2 !   14.7   0.1   6.5e-06     0.015     111     194 ..     252     329 ..     242     373 .. 0.75

  Alignments for each domain:
  == domain 1  score: 4.6 bits;  conditional E-value: 0.0075
  Kinase-like  19 llkkgdrsvvfevkdqetgeplavkvfllps.easkkdlerlkeqelairllrgknpeqAkdhlrlllpfdlvk 91 
                  l+++g ++++++++  etge +a+k   l + e s + ++   ++  a++ +r+ +     +h  ++  +++v 
   KOO24706.1 179 LVGRGAFNKIYKARHRETGEVVALKAMQLAAlEQSGH-VQ--GDEGVALEMMREMSILLSIRHPNIVTVHEVVM 249
                  678999*******************998887555443.22..34444555555555555555555555555555 PP

  == domain 2  score: 14.7 bits;  conditional E-value: 6.5e-06
  Kinase-like 111 vnallllpaasvdleilnkvlqkrsethkkletiarlllTlqlirlaanLqakglvhgkftvdnllldekgglmlggftaLvra 194
                    ++l++  +  dl++l + +++  ++ ++ + +a +ll           ++  ++h +++++nllld++g l+l +f+  +r 
   KOO24706.1 252 TQMFLVMELVDFDLGLLLEHMKQPFSE-AQVKCLAMQLL-----SALSAVHECFVLHRDLKPTNLLLDKNGVLKLCDFGLARRC 329
                  567999999999999999888765544.34445555555.....557789999*************************876665 PP

>> RIO1  RIO1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.1   0.0   1.7e-07   0.00037      15     149 ..     186     323 ..     174     328 .. 0.79

  Alignments for each domain:
  == domain 1  score: 20.1 bits;  conditional E-value: 1.7e-07
                 EEEE-S---SS-HHHHCTTTSTTSTCG--GS-HHHHHHHHHHHHHHHHHHHHHTT.--S--EE.EEETTEEEEE--E.ETTEEGGBHHHCG-HHHHHHH CS
        RIO1  15 iKiyktstteFkkrkkyvsgekrfkdrksktnprklvklwaekEfrnLkrleeag.vpvPkpi.elkrhvlvmefig.edgvaapklkdveeeeeaeel 110
                  Kiyk  ++e  ++ + +  +    ++  + +  + v l   +E+++L  +++ + v v +++ +  +  lvme+++ + g+ + ++k+  +e++ ++l
  KOO24706.1 186 NKIYKARHRETGEVVALKAMQLAALEQSGHVQGDEGVALEMMREMSILLSIRHPNiVTVHEVVmDPTQMFLVMELVDfDLGLLLEHMKQPFSEAQVKCL 284
                 678888887777755555544444455567777888899999******9999888688888752678889*******8889999999998889999999 PP

                 HHHHHHHHHHHHHTSTEEESS-STTSEEEETT.EEEE--G CS
        RIO1 111 yeevleemrklykeaglvHaDLSeyNvlvded.kvviIDv 149
                 + ++l++   +++e+ + H DL   N+l+d++  + + D+
  KOO24706.1 285 AMQLLSA-LSAVHECFVLHRDLKPTNLLLDKNgVLKLCDF 323
                 9999996.55667******************944456665 PP

>> APH  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.2   2.9e-05     0.065     163     196 ..     294     326 ..     181     328 .. 0.76

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 2.9e-05
                 SS-EEEE.-SS-SGGGEEEC..TTEEEEE---TT- CS
         APH 163 elptvll.HgDlhpgNllvdpddgrvtGviDfeda 196
                 +++++++ H+Dl+p Nll+d  ++ v  + Df++a
  KOO24706.1 294 AVHECFVlHRDLKPTNLLLD--KNGVLKLCDFGLA 326
                 46666655************..5555578888887 PP

>> Kdo  Lipopolysaccharide kinase (Kdo/WaaP) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.0   0.00017      0.37      75     166 ..     238     323 ..     222     343 .. 0.81

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.00017
         Kdo  75 vpkpvaagavkvgleyrAlllterlegaqdLedllakwae.laeelkrallkavgrliaklhragvnHadlyaknillqqeeeeeaeiwliDl 166
                  p++v   +v +++  + +l++e ++   dL  ll++ ++ ++e+  + l +++  + +  h+  v H+dl + n+ll++++     + l D+
  KOO24706.1 238 HPNIVTVHEVVMDPT-QMFLVMELVD--FDLGLLLEHMKQpFSEAQVKCLAMQLLSALSAVHECFVLHRDLKPTNLLLDKNG----VLKLCDF 323
                 566666666666664.6788888887..588889998888899999999999***************************998....5556666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (460 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       342  (0.0190752); expected 358.6 (0.02)
Passed bias filter:                      265  (0.0147805); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.53u 0.22s 00:00:00.75 Elapsed: 00:00:00.40
# Mc/sec: 3481.23
//
Query:       KOO24707.1  [L=281]
Description: hypothetical protein Ctob_005429 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
     0.0023   17.7   0.1     0.0052   16.5   0.1    1.6  1  Herpes_UL51  Herpesvirus UL51 protein


Domain annotation for each model (and alignments):
>> Herpes_UL51  Herpesvirus UL51 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.1   2.9e-07    0.0052      22      63 ..     130     171 ..     115     202 .. 0.87

  Alignments for each domain:
  == domain 1  score: 16.5 bits;  conditional E-value: 2.9e-07
  Herpes_UL51  22 deallrlqealaavnallPaPitledalasaddtrrlvraqa 63 
                   +a++ l eal+ +  +lP P  l +al+++d++  lvra  
   KOO24707.1 130 VKAMRWLAEALTELSFVLPKPTRLPEALGAVDEALALVRATG 171
                  5899***********************************975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (281 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       607  (0.0338558); expected 358.6 (0.02)
Passed bias filter:                      381  (0.0212505); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.22s 00:00:00.65 Elapsed: 00:00:00.39
# Mc/sec: 2186.13
//
Query:       KOO24708.1  [L=300]
Description: vacuolar protein sorting-associated protein 26 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
   1.3e-113  378.6   2.1   1.5e-113  378.4   2.1    1.0  1  Vps26       Vacuolar protein sorting-associated protein 26
    1.8e-06   28.1   1.1      0.012   15.6   0.1    3.1  3  Arrestin_N  Arrestin (or S-antigen), N-terminal domain


Domain annotation for each model (and alignments):
>> Vps26  Vacuolar protein sorting-associated protein 26
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  378.4   2.1  1.6e-117  1.5e-113       3     275 .]      11     286 ..       9     286 .. 0.97

  Alignments for each domain:
  == domain 1  score: 378.4 bits;  conditional E-value: 1.6e-117
                 TSEEEEEEETTTTTS-EEEEE-GGG-EEEEEEE-TT--EEEEEEEEESST--EEESEEEEEEEEEEEETTTGGGEEEEEEEEEEEE-SEEESS-EEEEE CS
       Vps26   3 ttidieikldneeerktvdvktekgkkeklkvyedgeslsGvvtirlkdskkvehqGikveliGqiellydkgnsvdfislvkdlakpGelqesksfpf 101
                 +++ + +k+++ ++r+tv v++ +g+ e+++++++ + ++G+v+++++ s+k+eh+G+kveliG ie+l+d++n+++f+slv++l +pGel+ sk +pf
  KOO24708.1  11 SAARLVVKFSDADTRQTVSVRQSDGRDEEQYLFSATDNITGMVEVEVQGSRKLEHTGVKVELIGMIEMLQDRSNTYEFTSLVRELEPPGELSGSKAYPF 109
                 56667899******************************************************************************************* PP

                 EETS----S--EE-SSEEEEEEEEEEEE-SS.S-EEEEEEEEE-.--B---S----EEEEEEETTTEEEEEEES-SEEETT-EEEEEEEEEEE-S-EEE CS
       Vps26 102 efkklekryesYkGknvklrYvlrvtvvRkl.kditkekdlivh.efttaPevnksvklevGiedclhiefeyskskyhLkdvivGkiyfllvrikiks 198
                 ef++ ek+yesY G nv+lrY++rvtv R++   it+e  + v+ ++ ++Pe+n+s+k+evGiedclhiefey++skyhLkd ++Gki+fllvrikik+
  KOO24708.1 110 EFNQAEKNYESYDGINVRLRYFVRVTVNRQYsGKITHEETIRVFvSLPEEPETNNSIKMEVGIEDCLHIEFEYNRSKYHLKDAVLGKIFFLLVRIKIKH 208
                 ******************************9889*****9999746799************************************************** PP

                 EEEEEEEEEEESSTTCEEEEEEEEEEEEEEES---TT-EEEEEEEGGGG-.----EEEETTTEEEEEEEEEEEEETTS CS
       Vps26 199 melslikrestGlaenvakdsetiakyeimDGasvrgesiPirlflsgyd.ltPtlrdvnkkfsvkyylnlvlvdedd 275
                 me+++ikrestG+++n++++set+ak+eimDGa+vrgesiPirlfl g+d ltPt+r+vn+kfsvky+lnlvl+de+d
  KOO24708.1 209 MEIAIIKRESTGTGANTYNESETVAKFEIMDGAPVRGESIPIRLFLGGFDtLTPTFRNVNNKFSVKYFLNLVLIDEED 286
                 *************************************************846************************97 PP

>> Arrestin_N  Arrestin (or S-antigen), N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.2   0.0   0.00013       1.2       6      52 ..      37      85 ..      35      95 .. 0.81
   2 !   15.6   0.1   1.4e-06     0.012      89     139 ..     102     152 ..      93     157 .. 0.86
   3 ?   -0.4   0.0      0.12   1.1e+03       2      25 ..     177     200 ..     176     235 .. 0.72

  Alignments for each domain:
  == domain 1  score: 9.2 bits;  conditional E-value: 0.00013
                S-SEEEEETT--EEEEEEE-CC..CCTT.CEEEEEEEEEEEESSSSTTT CS
  Arrestin_N  6 dkrdevyhpgetvdGkvllete..elkkarkvkielsgkartgweesev 52
                d++++ +++ ++++G+v +e +  ++++ ++vk+el g +++ ++ s++
  KOO24708.1 37 DEEQYLFSATDNITGMVEVEVQgsRKLEHTGVKVELIGMIEMLQDRSNT 85
                789999**********999654117778899*******99988876655 PP

  == domain 2  score: 15.6 bits;  conditional E-value: 1.4e-06
                 H-TTEEEEEE---TTS--SECSGEEEEEEEEEEEEECCCE--C.CCEEEEE CS
  Arrestin_N  89 kGehafpFsfelPknlpsSfeGkaggvrYevkvtldrpwkidkkkkkvftV 139
                 +G+ a+pF f+ +++   S  G   + rY+v+vt++r++  + ++++ + V
  KOO24708.1 102 SGSKAYPFEFNQAEKNYESYDGINVRLRYFVRVTVNRQYSGKITHEETIRV 152
                 599***********************************9666555555544 PP

  == domain 3  score: -0.4 bits;  conditional E-value: 0.12
                 EEEES-SEEEEETT--EEEEEEE- CS
  Arrestin_N   2 tieldkrdevyhpgetvdGkvlle 25 
                 +ie++ ++  yh  ++v Gk+ + 
  KOO24708.1 177 HIEFEYNRSKYHLKDAVLGKIFFL 200
                 678887788899999999999764 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (300 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       462  (0.0257683); expected 358.6 (0.02)
Passed bias filter:                      338  (0.0188521); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.43u 0.23s 00:00:00.66 Elapsed: 00:00:00.38
# Mc/sec: 2372.01
//
Query:       KOO24709.1  [L=360]
Description: suppressor of g2 allele of skp1-like protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.8e-29   99.8   6.8    1.6e-28   98.6   6.8    1.7  1  SGS       SGS domain
    1.8e-15   57.7   1.1    2.8e-15   57.1   1.1    1.3  1  CS        CS domain
    6.3e-12   44.8   7.6    0.00018   21.2   0.2    3.7  4  TPR_1     Tetratricopeptide repeat
    2.5e-11   42.8  10.2    5.6e-05   22.9   0.7    3.9  3  TPR_2     Tetratricopeptide repeat
    3.6e-11   42.6   4.3    2.7e-07   30.1   0.3    2.6  2  TPR_11    TPR repeat
    2.8e-08   34.3  11.0    1.8e-06   28.5   0.7    3.1  3  TPR_16    Tetratricopeptide repeat
    8.8e-08   32.5   3.6    0.00014   22.3   0.3    2.5  2  TPR_19    Tetratricopeptide repeat
    1.2e-07   31.4   6.1    0.00024   21.1   0.1    4.2  4  TPR_8     Tetratricopeptide repeat
     0.0002   21.9   6.8       0.14   13.0   0.7    3.5  3  TPR_14    Tetratricopeptide repeat
    0.00077   19.7   6.6       0.33   11.3   0.8    2.9  2  TPR_12    Tetratricopeptide repeat
      0.001   19.3   2.9      0.002   18.3   2.9    1.5  1  ANAPC3    Anaphase-promoting complex, cyclosome, subunit 3
     0.0019   18.4   0.7     0.0078   16.5   0.1    2.2  2  TPR_17    Tetratricopeptide repeat
     0.0034   17.5   3.1       0.52   10.5   0.5    2.4  2  TPR_9     Tetratricopeptide repeat
  ------ inclusion threshold ------
      0.053   13.9   6.7       0.23   11.8   2.8    3.3  3  TPR_20    Tetratricopeptide repeat
      0.055   13.5   5.1          9    6.6   0.2    3.5  3  TPR_7     Tetratricopeptide repeat
       0.17   12.1   1.1        6.2    7.1   0.1    2.4  2  DUF4241   Protein of unknown function (DUF4241)
       0.24   11.3   1.5         11    6.0   0.4    2.7  2  TPR_10    Tetratricopeptide repeat
          3    8.7   5.7        8.2    7.3   0.9    3.2  3  TPR_6     Tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> SGS  SGS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   98.6   6.8   1.6e-31   1.6e-28       1      83 []     277     359 ..     277     359 .. 0.97

  Alignments for each domain:
  == domain 1  score: 98.6 bits;  conditional E-value: 1.6e-31
         SGS   1 kdWdklekelekeekeekkeeegeaalnklFkklYadadedtrrammKSyveSnGtvLstnWeevkkkkve..tkpPegmeakkw 83 
                 kdWd++e++l+kee++ek+e  ge+alnklF+++Y  +de trram+KS+++S+GtvLstnW+ev +k++e   ++P+g+e+kkw
  KOO24709.1 277 KDWDAVESKLKKEEEDEKPE--GEEALNKLFRDIYGRSDETTRRAMNKSFQTSGGTVLSTNWKEVAEKDYEkdRSAPDGQEWKKW 359
                 7**********999999987..************************************************97789*********9 PP

>> CS  CS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.1   1.1   2.8e-18   2.8e-15       2      76 .]     156     231 ..     155     231 .. 0.88

  Alignments for each domain:
  == domain 1  score: 57.1 bits;  conditional E-value: 2.8e-18
                 SCEEEEETTEEEEEEE-TTCTTTTTCEEEEEETTEEEEEE..TS.CEEEEECEBSS-BETTTEEEEEETTEEEEEEEB CS
          CS   2 kydWyQtldeVvvtiyvkkvnikkkdvkvefkerslkvki..gk.eklliegeLfgpIdpeesswtieskkveitLkK 76 
                 +++WyQt +eVvv++ + +v  + ++v+v+f e  + v+i  ++  + +   +Lf++I+pe+s++++ ++k+e++LkK
  KOO24709.1 156 RHEWYQTQSEVVVSVLARNV--SPEKVQVDFHEAEVDVSIklESgAEYIHTFSLFHKIVPEQSKYSVGASKIELKLKK 231
                 89*****************9..99**********9666665555566666777************************9 PP

>> TPR_1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   0.1   5.7e-06    0.0057       8      34 .]       4      30 ..       4      30 .. 0.94
   2 !   10.1   0.0   0.00056      0.56       1      23 [.      31      53 ..      31      60 .. 0.91
   3 !   21.2   0.2   1.8e-07   0.00018       1      30 [.      64      93 ..      64      96 .. 0.94
   4 ?   -2.9   0.2       7.2   7.2e+03      20      26 ..     340     346 ..     340     346 .. 0.83

  Alignments for each domain:
  == domain 1  score: 16.4 bits;  conditional E-value: 5.7e-06
                HHHHHHTT-HHHHHHHHHHHHHHSTTH CS
       TPR_1  8 GnayfklgkydeAleyyekALelnPnn 34
                Gna f  ++y+ A+ +y+kA+  nP++
  KOO24709.1  4 GNAAFVDEEYETAISHYSKAIAANPED 30
                89999999*****************86 PP

  == domain 2  score: 10.1 bits;  conditional E-value: 0.00056
                HHHHHHHHHHHHHTT-HHHHHHH CS
       TPR_1  1 akalynlGnayfklgkydeAley 23
                a+a+  +++a+++l++y eA+ +
  KOO24709.1 31 ADAFSKRAAAHLRLKRYTEAVSD 53
                899*****************865 PP

  == domain 3  score: 21.2 bits;  conditional E-value: 1.8e-07
                HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH CS
       TPR_1  1 akalynlGnayfklgkydeAleyyekALel 30
                +ka+ ++G+a f lg+y+ A +++ kALel
  KOO24709.1 64 PKAFQRKGQASFALGEYEAARAAFAKALEL 93
                58999************************9 PP

  == domain 4  score: -2.9 bits;  conditional E-value: 7.2
                 HHHHHHH CS
       TPR_1  20 Aleyyek 26 
                 A+++yek
  KOO24709.1 340 AEKDYEK 346
                 8899997 PP

>> TPR_2  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.4   0.1   3.1e-05     0.031       8      34 .]       4      30 ..       2      30 .. 0.95
   2 !   10.2   0.1   0.00069      0.69       1      25 [.      31      55 ..      31      61 .. 0.84
   3 !   22.9   0.7   5.7e-08   5.6e-05       2      31 ..      65      94 ..      64      96 .. 0.92

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 3.1e-05
       TPR_2  8 GlayyklgdyeeAleafekAleldPnn 34
                G+a++   +ye A+ ++ kA++ +P++
  KOO24709.1  4 GNAAFVDEEYETAISHYSKAIAANPED 30
                8999999******************86 PP

  == domain 2  score: 10.2 bits;  conditional E-value: 0.00069
       TPR_2  1 aealynlGlayyklgdyeeAleafe 25
                a+a   ++ a+++l++y eA+ +  
  KOO24709.1 31 ADAFSKRAAAHLRLKRYTEAVSDAT 55
                688999**************98765 PP

  == domain 3  score: 22.9 bits;  conditional E-value: 5.7e-08
       TPR_2  2 ealynlGlayyklgdyeeAleafekAleld 31
                +a  + G+a ++lg+ye A++af kAlel 
  KOO24709.1 65 KAFQRKGQASFALGEYEAARAAFAKALELS 94
                78899***********************96 PP

>> TPR_11  TPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.1   0.3   2.7e-10   2.7e-07       2      41 ..       5      44 ..       4      45 .. 0.89
   2 !   13.5   0.4   4.3e-05     0.043       1      24 [.      71      94 ..      71      97 .. 0.93

  Alignments for each domain:
  == domain 1  score: 30.1 bits;  conditional E-value: 2.7e-10
      TPR_11  2 dayyeqGkyeeAieaYkkAlkldPdnaeayynLGlayykq 41
                +a +   +ye Ai +Y+kA++ +P++a+a++++++a++++
  KOO24709.1  5 NAAFVDEEYETAISHYSKAIAANPEDADAFSKRAAAHLRL 44
                55566679*****************************986 PP

  == domain 2  score: 13.5 bits;  conditional E-value: 4.3e-05
      TPR_11  1 GdayyeqGkyeeAieaYkkAlkld 24
                G+a +++G+ye+A +a+ kAl+l+
  KOO24709.1 71 GQASFALGEYEAARAAFAKALELS 94
                8899******************96 PP

>> TPR_16  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.5   0.7   1.8e-09   1.8e-06       3      56 ..       3      54 ..       1      60 [. 0.93
   2 !   11.9   0.5   0.00028      0.28      40      64 ..      70      94 ..      63     104 .. 0.73
   3 ?   -2.3   0.2       7.7   7.7e+03      39      64 ..     242     267 ..     240     269 .. 0.68

  Alignments for each domain:
  == domain 1  score: 28.5 bits;  conditional E-value: 1.8e-09
      TPR_16  3 laraalragdyddAaaaleaalkrdpssPdaaeAllllgdaalrqgrlaeAa.al 56
                 ++aa+   +y+ A+  +  a++++   P++a+A   ++ a+lr++r++eA+ ++
  KOO24709.1  3 FGNAAFVDEEYETAISHYSKAIAAN---PEDADAFSKRAAAHLRLKRYTEAVsDA 54
                699**********************...***********************9666 PP

  == domain 2  score: 11.9 bits;  conditional E-value: 0.00028
      TPR_16 40 lgdaalrqgrlaeAaalyraalraa 64
                +g+a +++g++++A+a++++al+ +
  KOO24709.1 70 KGQASFALGEYEAARAAFAKALELS 94
                5777777777777777777777654 PP

  == domain 3  score: -2.3 bits;  conditional E-value: 7.7
      TPR_16  39 llgdaalrqgrlaeAaalyraalraa 64 
                 ++gda   +g l +  a+ ++al+ a
  KOO24709.1 242 GSGDAEVIAGALNAEPAVADEALKPA 267
                 56677777777777778888888654 PP

>> TPR_19  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.3   0.3   1.4e-07   0.00014       5      45 ..      11      51 ..       7      52 .. 0.95
   2 !   10.8   0.3   0.00054      0.54       3      34 ..      76     107 ..      64     115 .. 0.78

  Alignments for each domain:
  == domain 1  score: 22.3 bits;  conditional E-value: 1.4e-07
      TPR_19  5 gdyaeAlalleqalqedpknaearllLAeallalgqldeAe 45
                + y+ A++++++a++++p++a+a    A a+l l++++eA 
  KOO24709.1 11 EEYETAISHYSKAIAANPEDADAFSKRAAAHLRLKRYTEAV 51
                689************************************95 PP

  == domain 2  score: 10.8 bits;  conditional E-value: 0.00054
      TPR_19   3 aegdyaeAlalleqalqedpknaearllLAea 34 
                 a g y++A a++++al+ + +  e++ ++ ++
  KOO24709.1  76 ALGEYEAARAAFAKALELSGDGRELKRWMRKC 107
                 56888888888888888888888888888544 PP

>> TPR_8  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.7   0.1    0.0094       9.4      16      34 .]      12      30 ..       4      30 .. 0.92
   2 ?    4.1   0.0     0.067        67       3      28 ..      33      58 ..      31      60 .. 0.77
   3 !   21.1   0.1   2.4e-07   0.00024       2      31 ..      65      94 ..      64      96 .. 0.92
   4 ?   -1.0   0.1       2.8   2.8e+03      14      26 ..     334     346 ..     332     346 .. 0.83

  Alignments for each domain:
  == domain 1  score: 6.7 bits;  conditional E-value: 0.0094
                -HHHHHHHHHHHHHHHHH. CS
       TPR_8 16 dyeeAkeyyekaleldpdn 34
                +ye A++ y ka+ ++p++
  KOO24709.1 12 EYETAISHYSKAIAANPED 30
                79***************85 PP

  == domain 2  score: 4.1 bits;  conditional E-value: 0.067
                HHHHHHHHHHHTT-HHHHHHHHHHHH CS
       TPR_8  3 ayynlgsiylklgdyeeAkeyyekal 28
                a  + + ++l l++y eA++     +
  KOO24709.1 33 AFSKRAAAHLRLKRYTEAVSDATLSV 58
                666778899*********99766655 PP

  == domain 3  score: 21.1 bits;  conditional E-value: 2.4e-07
                CHHHHHHHHHHHTT-HHHHHHHHHHHHHHH CS
       TPR_8  2 eayynlgsiylklgdyeeAkeyyekaleld 31
                +a +++g++ + lg+ye+A +++ kalel+
  KOO24709.1 65 KAFQRKGQASFALGEYEAARAAFAKALELS 94
                68899***********************98 PP

  == domain 4  score: -1.0 bits;  conditional E-value: 2.8
                 TT-HHHHHHHHHH CS
       TPR_8  14 lgdyeeAkeyyek 26 
                 ++ +e A++ yek
  KOO24709.1 334 TNWKEVAEKDYEK 346
                 6788999999998 PP

>> TPR_14  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.9   0.6    0.0031       3.1      15      38 ..      11      34 ..       3      44 .. 0.85
   2 ?    2.9   0.3      0.26   2.6e+02       2      21 ..      32      51 ..      31      52 .. 0.89
   3 !   13.0   0.7   0.00014      0.14       1      33 [.      64      96 ..      64     104 .. 0.87

  Alignments for each domain:
  == domain 1  score: 8.9 bits;  conditional E-value: 0.0031
      TPR_14 15 GdpdeAiallrralalaPddaeaw 38
                +++++Ai ++ +a+a++P+da+a 
  KOO24709.1 11 EEYETAISHYSKAIAANPEDADAF 34
                6899****************9875 PP

  == domain 2  score: 2.9 bits;  conditional E-value: 0.26
      TPR_14  2 eallalaeallalGdpdeAi 21
                +a  ++a+a+l+l ++ eA+
  KOO24709.1 32 DAFSKRAAAHLRLKRYTEAV 51
                678899************97 PP

  == domain 3  score: 13.0 bits;  conditional E-value: 0.00014
      TPR_14  1 peallalaeallalGdpdeAiallrralalaPd 33
                p+a ++ ++a +alG++++A+a++ +al+l  d
  KOO24709.1 64 PKAFQRKGQASFALGEYEAARAAFAKALELSGD 96
                57889999*********************9876 PP

>> TPR_12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.3   0.8   0.00033      0.33      10      66 ..       4      52 ..       1      61 [. 0.82
   2 !   10.1   0.6   0.00078      0.78      10      33 ..      71      94 ..      63     105 .. 0.79

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00033
      TPR_12 10 aavlrrlgrydeAlellekaleiarrllGpdhpltattlrnLgrlyralgryeeAle 66
                +++ +  ++y+ A++++ ka+++      p+    a +    + ++++l+ry eA++
  KOO24709.1  4 GNAAFVDEEYETAISHYSKAIAAN-----PE---DADAFSKRAAAHLRLKRYTEAVS 52
                677777899999999999996666.....65...699******************86 PP

  == domain 2  score: 10.1 bits;  conditional E-value: 0.00078
      TPR_12 10 aavlrrlgrydeAlellekaleia 33
                +++ ++lg+y+ A++ + kale+ 
  KOO24709.1 71 GQASFALGEYEAARAAFAKALELS 94
                666678899999999999999876 PP

>> ANAPC3  Anaphase-promoting complex, cyclosome, subunit 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.3   2.9     2e-06     0.002       4      81 ..      12      89 ..      10      90 .. 0.89

  Alignments for each domain:
  == domain 1  score: 18.3 bits;  conditional E-value: 2e-06
                -HHHHHHHHHHHH.HHH--HHHHHHHHHHHHHTT-HHHHHHHHHCTSHHHC-HHHHHHHHHHHHHTT-HHHHHHHH-S CS
      ANAPC3  4 nyknAiflaerllaaetespedayllAlclylngqykrAyellrkaklnskslgcrylfAqcllkLkkyeeAiaaLek 81
                 y++Ai +++++ aa++e++++    A +++++++y++A   +  + +   ++++   ++q++++L++ye A+aa+ k
  KOO24709.1 12 EYETAISHYSKAIAANPEDADAFSKRAAAHLRLKRYTEAVSDATLSVKLLATPKAFQRKGQASFALGEYEAARAAFAK 89
                79***********8888888888888**************999888555778889999****************9976 PP

>> TPR_17  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.1   7.8e-06    0.0078       2      33 ..      20      51 ..      19      52 .. 0.94
   2 ?   -1.0   0.0       3.1   3.1e+03      15      33 ..      66      84 ..      64      85 .. 0.81

  Alignments for each domain:
  == domain 1  score: 16.5 bits;  conditional E-value: 7.8e-06
      TPR_17  2 ylkaleldPnnadaynnLAelllknGdlmtAr 33
                y ka++ +P +ada+  +A ++l+++++ +A+
  KOO24709.1 20 YSKAIAANPEDADAFSKRAAAHLRLKRYTEAV 51
                99**************************9995 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 3.1
      TPR_17 15 aynnLAelllknGdlmtAr 33
                a++ ++++   +G+++ Ar
  KOO24709.1 66 AFQRKGQASFALGEYEAAR 84
                6777889999999999998 PP

>> TPR_9  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.1   0.1    0.0058       5.8       7      51 ..       9      53 ..       4      56 .. 0.88
   2 !   10.5   0.5   0.00053      0.52      34      66 ..      69     101 ..      62     106 .. 0.86

  Alignments for each domain:
  == domain 1  score: 7.1 bits;  conditional E-value: 0.0058
       TPR_9  7 reedweralavverllllaPddpeerrdRGlllaqlGclsaAlad 51
                  e++e a+  +   ++ +P+d++    R+ ++ +l ++ +A+ d
  KOO24709.1  9 VDEEYETAISHYSKAIAANPEDADAFSKRAAAHLRLKRYTEAVSD 53
                567888889999999999************************987 PP

  == domain 2  score: 10.5 bits;  conditional E-value: 0.00053
       TPR_9  34 dRGlllaqlGclsaAladLeaylalapdapdae 66 
                   G++ + lG ++aA+a++  +l+l++d ++  
  KOO24709.1  69 RKGQASFALGEYEAARAAFAKALELSGDGRELK 101
                 5799999*******************9988765 PP

>> TPR_20  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   2.8   0.00024      0.23       7      82 ..      16     105 ..      11     107 .. 0.81
   2 ?    0.8   0.0      0.62   6.2e+02      22      62 ..     185     225 ..     179     229 .. 0.90
   3 ?   -0.3   0.2       1.4   1.4e+03      21      21 ..     292     292 ..     241     325 .. 0.52

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 0.00024
      TPR_20   7 elaeleaalaanpddldarldlAlallaagryeeAleqL...leilkrdrkw...........eddaarkqllkifealgsqdplvakyR 82 
                  ++   +a+aanp+d da  + A a l  +ry eA++     +++l++ +++           e +aar ++ k +e+ g++ +l + +R
  KOO24709.1  16 AISHYSKAIAANPEDADAFSKRAAAHLRLKRYTEAVSDAtlsVKLLATPKAFqrkgqasfalgEYEAARAAFAKALELSGDGRELKRWMR 105
                 5778889*****************************876212345555555599999999999999999999999999999888776666 PP

  == domain 2  score: 0.8 bits;  conditional E-value: 0.62
      TPR_20  22 ldarldlAlallaagryeeAleqLleilkrdrkweddaark 62 
                 ++a++d++ +l ++ +y   ++++ +i+ +++k++ +a + 
  KOO24709.1 185 HEAEVDVSIKLESGAEYIHTFSLFHKIVPEQSKYSVGASKI 225
                 7999******************************9998875 PP

  == domain 3  score: -0.3 bits;  conditional E-value: 1.4
      TPR_20  21 d 21 
                 d
  KOO24709.1 292 D 292
                 2 PP

>> TPR_7  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.2   0.1     0.012        12      13      35 ..      11      31 ..       5      32 .. 0.86
   2 ?    0.5   0.1      0.78   7.8e+02       6      20 ..      38      52 ..      33      54 .. 0.87
   3 ?    6.6   0.2    0.0091         9       6      29 ..      71      94 ..      66     100 .. 0.80

  Alignments for each domain:
  == domain 1  score: 6.2 bits;  conditional E-value: 0.012
       TPR_7 13 GdyeeAielyeqsLaltkdpeda 35
                 +ye+Ai++y +  a++  peda
  KOO24709.1 11 EEYETAISHYSK--AIAANPEDA 31
                59**********..888888775 PP

  == domain 2  score: 0.5 bits;  conditional E-value: 0.78
       TPR_7  6 arlysrlGdyeeAie 20
                a ++ rl +y eA++
  KOO24709.1 38 AAAHLRLKRYTEAVS 52
                789**********96 PP

  == domain 3  score: 6.6 bits;  conditional E-value: 0.0091
       TPR_7  6 arlysrlGdyeeAielyeqsLalt 29
                +++ ++lG+ye A   + ++L+l 
  KOO24709.1 71 GQASFALGEYEAARAAFAKALELS 94
                788889*************66664 PP

>> DUF4241  Protein of unknown function (DUF4241)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.1   0.1    0.0062       6.2      90     132 ..       4      46 ..       1      71 [. 0.69
   2 ?    3.9   0.1     0.058        58     105     145 ..     281     322 ..     205     349 .. 0.76

  Alignments for each domain:
  == domain 1  score: 7.1 bits;  conditional E-value: 0.0062
     DUF4241  90 GlacffDakafealsefeeslleeepkkdeyddyfeelfekka 132
                 G+a+f+D+++  a+s++++ + ++ +++d+ ++  +++++ k 
  KOO24709.1   4 GNAAFVDEEYETAISHYSKAIAANPEDADAFSKRAAAHLRLKR 46 
                 99*****************444444444455555555444443 PP

  == domain 2  score: 3.9 bits;  conditional E-value: 0.058
     DUF4241 105 efeeslleeepkkd.eyddyfeelfekkaeaepkyqsesgdw 145
                 ++e +l++ee++++ e ++++++lf++ +  ++++ + +++ 
  KOO24709.1 281 AVESKLKKEEEDEKpEGEEALNKLFRDIYGRSDETTRRAMNK 322
                 333355555555557777777887777777777777666654 PP

>> TPR_10  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.2   0.0     0.084        84       7      24 ..      36      53 ..      31      59 .. 0.82
   2 ?    6.0   0.4     0.011        11      10      31 ..      72      93 ..      71      94 .. 0.87

  Alignments for each domain:
  == domain 1  score: 3.2 bits;  conditional E-value: 0.084
      TPR_10  7 NLanalrqrgrydeAeal 24
                  a+a+ +++ry+eA+ +
  KOO24709.1 36 KRAAAHLRLKRYTEAVSD 53
                5699***********976 PP

  == domain 2  score: 6.0 bits;  conditional E-value: 0.011
      TPR_10 10 nalrqrgrydeAealleealai 31
                 a +++g+y++A+a + +al++
  KOO24709.1 72 QASFALGEYEAARAAFAKALEL 93
                566899**************86 PP

>> TPR_6  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.4   0.0       1.3   1.3e+03      15      32 ..      12      29 ..       4      30 .. 0.81
   2 ?    1.0   0.1      0.87   8.7e+02       2      20 ..      33      51 ..      32      55 .. 0.85
   3 ?    7.3   0.9    0.0083       8.2       5      28 ..      69      92 ..      65      95 .. 0.86

  Alignments for each domain:
  == domain 1  score: 0.4 bits;  conditional E-value: 1.3
                HHHHHHHHHHHHHHH-TT CS
       TPR_6 15 dtdkAlealerlikeYPd 32
                ++++A+  + + i   P+
  KOO24709.1 12 EYETAISHYSKAIAANPE 29
                799999999999998885 PP

  == domain 2  score: 1.0 bits;  conditional E-value: 0.87
                HHHHHHHHHHHHHHHHHHH CS
       TPR_6  2 AlyklalsyrklgdtdkAl 20
                A+ k+a ++++l+++++A+
  KOO24709.1 33 AFSKRAAAHLRLKRYTEAV 51
                6668999****99*****8 PP

  == domain 3  score: 7.3 bits;  conditional E-value: 0.0083
                HHHHHHHHHHHHHHHHHHHHHHHH CS
       TPR_6  5 klalsyrklgdtdkAlealerlik 28
                + +++ ++lg++++A++a+ + ++
  KOO24709.1 69 RKGQASFALGEYEAARAAFAKALE 92
                6789999999**********9886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (360 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       828  (0.0461822); expected 358.6 (0.02)
Passed bias filter:                      512  (0.0285571); expected 358.6 (0.02)
Passed Vit filter:                        62  (0.00345808); expected 17.9 (0.001)
Passed Fwd filter:                        18  (0.00100396); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              18  [number of targets reported over threshold]
# CPU time: 0.47u 0.25s 00:00:00.72 Elapsed: 00:00:00.39
# Mc/sec: 2756.34
//
Query:       KOO24710.1  [L=822]
Description: kif3c type kinesin-like protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    6.5e-56  189.7   0.0    8.4e-56  189.3   0.0    1.1  1  Kinesin       Kinesin motor domain
    3.7e-10   39.9   0.0    6.5e-10   39.1   0.0    1.4  1  Microtub_bd   Microtubule binding
    0.00014   21.6   7.8    0.00028   20.7   7.8    1.4  1  zf-C3HC4_3    Zinc finger, C3HC4 type (RING finger)
    0.00024   20.9   8.8    0.00024   20.9   8.8    2.0  2  zf-C3HC4_2    Zinc finger, C3HC4 type (RING finger)
    0.00059   19.6   8.0     0.0013   18.5   8.0    1.6  1  zf-C3HC4      Zinc finger, C3HC4 type (RING finger)
    0.00082   19.7   8.4     0.0022   18.3   8.4    1.8  1  zf-RING_2     Ring finger domain
     0.0015   18.5   6.5     0.0035   17.3   6.5    1.7  1  zf-RING_5     zinc-RING finger domain
     0.0037   17.1   4.9     0.0082   16.0   4.9    1.5  1  zf-RING_6     zf-RING of BARD1-type protein
  ------ inclusion threshold ------
       0.06   13.4   3.6       0.15   12.1   3.6    1.7  1  DZR           Double zinc ribbon
      0.073   12.9   8.3       0.14   12.0   8.3    1.5  1  Prok-RING_4   Prokaryotic RING finger family 4
      0.097   12.3   3.2       0.18   11.4   3.2    1.4  1  TackOD1       Thaumarchaeal output domain 1
       0.14   12.4   3.4       0.43   10.9   3.4    1.8  1  zf-rbx1       RING-H2 zinc finger domain
       0.25   11.4   6.8      0.078   13.0   3.3    2.0  1  zf-RING_UBOX  RING-type zinc-finger


Domain annotation for each model (and alignments):
>> Kinesin  Kinesin motor domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  189.3   0.0   6.1e-59   8.4e-56      66     331 ..       1     273 [.       1     275 [. 0.89

  Alignments for each domain:
  == domain 1  score: 189.3 bits;  conditional E-value: 6.1e-59
                 HHHHHHTTSEEEEEEEESTTSSHHHHHTBC.....TTTSBSHHHHHHHHHHHHHHHCTTTH..EEEEEEEEEEEEEETTEEEETTSTTTTSTSSEBEEE CS
     Kinesin  66 lvesvleGynatifaYGqtgsGKTyTmegk.....eeeeeGiipraleelFesikkekeek..ekefsvkvsylEiYneeiyDLLeskkskkkkklkir 157
                 ++es+l+G  +++faYGqtg+GKT++m g      +++ +G++p +++elF+++++ ++++  + +f +  +++Ei   +iyDLL++++++ ++     
  KOO24710.1   1 MIESALKGRDSLLFAYGQTGAGKTFSMYGAeggknPSKLDGVVPATVSELFRRTMAIEKDTvgMVKFALFATLVEIQGKNIYDLLAPSDKEGNQ----P 95 
                 799***************************9999988899************99987766555899*********************9655544....2 PP

                 ECTTSCCEEETTS--EEESSHHHHHHHHHHHHHHHTSTTSSCTSHHCCSEEEEEEEEEEEETTTTTCEE...........EEEEEEEEEEEEECCCHHH CS
     Kinesin 158 edskkgevyvkgltevevksaeevlellekgeknrkvaetklneeSSRSHavftitleqknlkeeteek...........vkisklnLvDLAGsErask 245
                 +    g   + g + +++ s++ +++++e+g + r++a+  + e+SSRSH+ +++ le++++k++++++           +++s++ ++DLAGsE  + 
  KOO24710.1  96 QCGLLG-SSLLGNRIERIYSSRSLTHTIERGMATRTTAANLMHEHSSRSHCFLQLILERSQSKRGATTReqikdglaeseKTTSNFYMIDLAGSETFRY 193
                 222223.5578899999******************************************999988773346899****9999*************8777 PP

                 HSSTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCCTSTSCGGGSHHHHHTGGGHSSS..SEEEEEEEE-TBGGGHHHHHHHHHHHHHHC CS
     Kinesin 246 tgaaegerlkEaaniNkSLlaLgrvisaLaekkkskhipYRdSkLTrlLqdsLgGn..sktlmivtvspssenleetlstlkfaerak 331
                 + +      +    iN  L+aLgrv+ a+++k  ++h+pYRdS +T+lL + LgG+  + t m++++sp+s  ++et +tl++a r+ 
  KOO24710.1 194 QDD------QPLRGINAGLVALGRVLMAMSDK--AAHVPYRDSVVTQLLSSVLGGDkpCLTEMLCCISPNSAFAHETKCTLEYARRTA 273
                 763......35679******************..*********************7336789**********************9975 PP

>> Microtub_bd  Microtubule binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.1   0.0   4.7e-13   6.5e-10      75     149 .]       2      85 ..       1      85 [. 0.86

  Alignments for each domain:
  == domain 1  score: 39.1 bits;  conditional E-value: 4.7e-13
                  HHHHHTT--EEEEEEES......................ST-HCHHHHHHHHHHCCTS...CCCCEEEEEEEEEEESS-EEETT CS
  Microtub_bd  75 vqsaldgynvcifaygqTGsGKtyTmeg......eeeeagmipraveeifetiselke...kgwkyeielqfveiynekvqDlL 149
                  ++sal+g +  +faygqTG+GKt+ m g       ++ +g++p +v+e+f+ +   ++      k+++ +++vei+ ++++DlL
   KOO24710.1   2 IESALKGRDSLLFAYGQTGAGKTFSMYGaeggknPSKLDGVVPATVSELFRRTMAIEKdtvGMVKFALFATLVEIQGKNIYDLL 85 
                  789************************999887556779***********976554441225689******************8 PP

>> zf-C3HC4_3  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.7   7.8     2e-07   0.00028       3      46 ..     480     523 ..     478     525 .. 0.92

  Alignments for each domain:
  == domain 1  score: 20.7 bits;  conditional E-value: 2e-07
                 SB-TTTSSS.BS-EEETTEEEEEE-HHHHHHHHHTT-B-TTT--B CS
  zf-C3HC4_3   3 eeCviCler.prnvvllpCgHlvlCeeCaekllkrkkkCpiCrrp 46 
                 ++C++C++   r + l+ C+H+ lC  C+e+    ++ Cp+C +p
  KOO24710.1 480 TLCSLCKSPlLRPTRLVACRHV-LCALCVERSILYHRVCPVCATP 523
                 78******768889999*****.*********99********987 PP

>> zf-C3HC4_2  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.3       3.8   5.3e+03      20      34 ..     139     154 ..     137     156 .. 0.75
   2 !   20.9   8.8   1.7e-07   0.00024       2      40 .]     482     520 ..     481     520 .. 0.99

  Alignments for each domain:
  == domain 1  score: -2.6 bits;  conditional E-value: 3.8
  zf-C3HC4_2  20 HvfCqkCilr.sLeek 34 
                 H+  + C+l+  Le++
  KOO24710.1 139 HSSRSHCFLQlILERS 154
                 888899**99666665 PP

  == domain 2  score: 20.9 bits;  conditional E-value: 1.7e-07
  zf-C3HC4_2   2 CpiCldmlkdpsvvtpCgHvfCqkCilrsLeekneCPlC 40 
                 C +C   l  p+++ +C Hv C+ C+ rs+  +  CP+C
  KOO24710.1 482 CSLCKSPLLRPTRLVACRHVLCALCVERSILYHRVCPVC 520
                 *************************************** PP

>> zf-C3HC4  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.5   8.0   9.6e-07    0.0013       1      41 []     482     520 ..     482     520 .. 0.96

  Alignments for each domain:
  == domain 1  score: 18.5 bits;  conditional E-value: 9.6e-07
                 -TTT-S--SS-E.E-TTS--B-CHHHHHHHHCTSSB--TTT CS
    zf-C3HC4   1 CpiCleeakepnelleCkHsfCskCirkilksrkkvkCPlC 41 
                 C++C++ +  p++l  C+H +C  C+++ +    ++ CP+C
  KOO24710.1 482 CSLCKSPLLRPTRLVACRHVLCALCVERSIL--YHRVCPVC 520
                 *******************************..6777**** PP

>> zf-RING_2  Ring finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.3   8.4   1.6e-06    0.0022       3      43 ..     482     520 ..     480     521 .. 0.90

  Alignments for each domain:
  == domain 1  score: 18.3 bits;  conditional E-value: 1.6e-06
   zf-RING_2   3 CpICleelssadsvlllpCgHvfhreClerwlrssstCPlC 43 
                 C++C ++l ++ +++   C+Hv +  C+er +  ++ CP+C
  KOO24710.1 482 CSLCKSPLLRPTRLV--ACRHVLCALCVERSILYHRVCPVC 520
                 ********9766665..7**************9******** PP

>> zf-RING_5  zinc-RING finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   6.5   2.5e-06    0.0035       2      43 ..     482     521 ..     481     522 .. 0.95

  Alignments for each domain:
  == domain 1  score: 17.3 bits;  conditional E-value: 2.5e-06
   zf-RING_5   2 CnkCfeklskeekfyltsCgHifCekClkkllekeavCpiCr 43 
                 C+ C ++l   ++  l++C H++C  C+ ++    +vCp+C 
  KOO24710.1 482 CSLCKSPL--LRPTRLVACRHVLCALCVERSILYHRVCPVCA 521
                 99999999..999******************9999******6 PP

>> zf-RING_6  zf-RING of BARD1-type protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   4.9     6e-06    0.0082      10      50 ..     482     524 ..     472     530 .. 0.88

  Alignments for each domain:
  == domain 1  score: 16.0 bits;  conditional E-value: 6e-06
   zf-RING_6  10 csrctdilrepvclggcehifcsnci..sdcfgsgcpvcytpa 50 
                 cs c   l  p  l  c h++c+ c+  s  +   cpvc tp 
  KOO24710.1 482 CSLCKSPLLRPTRLVACRHVLCALCVerSILYHRVCPVCATPN 524
                 *************************944556899*******95 PP

>> DZR  Double zinc ribbon
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   3.6   0.00011      0.15      12      48 ..     479     520 ..     472     521 .. 0.90

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 0.00011
         DZR  12 arfCseCgtklkavaa.....edrCpsCgekvdpearfCpeC 48 
                 +  Cs C+++l ++++     +  C  C e   + +r+Cp C
  KOO24710.1 479 QTLCSLCKSPLLRPTRlvacrHVLCALCVERSILYHRVCPVC 520
                 568*******9877779************************* PP

>> Prok-RING_4  Prokaryotic RING finger family 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   8.3    0.0001      0.14       1      38 [.     482     522 ..     482     526 .. 0.82

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 0.0001
  Prok-RING_4   1 CvlCgeq.ekkailepCgHlvCkeCfdsk..dlssCPlCqr 38 
                  C lC++   +  +l+ C H++C  C + +   +  CP+C +
   KOO24710.1 482 CSLCKSPlLRPTRLVACRHVLCALCVERSilYHRVCPVCAT 522
                  78888774566799*************9965555*****75 PP

>> TackOD1  Thaumarchaeal output domain 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   3.2   0.00013      0.18      40      97 ..     465     524 ..     451     542 .. 0.85

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00013
     TackOD1  40 pllealskekeeseelleelvkrglle.eelv.drirlCpsCksghlnvrevCpkCkSid 97 
                 +l++al   ++e  ++l +l+k+ ll+ ++lv  r++lC  C   ++ ++ vCp C   +
  KOO24710.1 465 KLAKALLRRQRELAQTLCSLCKSPLLRpTRLVaCRHVLCALCVERSILYHRVCPVCATPN 524
                 678888888889***************9666516999*******************8766 PP

>> zf-rbx1  RING-H2 zinc finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   3.4   0.00031      0.43      11      54 ..     479     520 ..     474     521 .. 0.89

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00031
     zf-rbx1  11 eeacieckapgdeecpvvlGeCgHaFHlhCiskWlktrkvCPlc 54 
                 +  c  ck+p  +  p  l +C+H+    C+++ +  ++vCP+c
  KOO24710.1 479 QTLCSLCKSPLLR--PTRLVACRHVLCALCVERSILYHRVCPVC 520
                 6789999999998..888889*********************** PP

>> zf-RING_UBOX  RING-type zinc-finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   3.3   5.7e-05     0.078       1      31 [.     482     510 ..     482     518 .. 0.76

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 5.7e-05
  zf-RING_UBOX   1 CpIClelftdP..lvlpCGHtFCreClwelsks 31 
                   C+ C++++ +P  lv  C H++C  C+    +s
    KOO24710.1 482 CSLCKSPLLRPtrLV-ACRHVLCALCV---ERS 510
                   ***********5433.8*********9...333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (822 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       639  (0.0356406); expected 358.6 (0.02)
Passed bias filter:                      456  (0.0254337); expected 358.6 (0.02)
Passed Vit filter:                        58  (0.00323498); expected 17.9 (0.001)
Passed Fwd filter:                        13  (0.000725082); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 0.66u 0.24s 00:00:00.90 Elapsed: 00:00:00.41
# Mc/sec: 5968.28
//
Query:       KOO24711.1  [L=1661]
Description: hypothetical protein Ctob_005435 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      5e-09   36.2  22.8      5e-05   23.2   9.3    3.0  2  PqiA      Paraquat-inducible protein A


Domain annotation for each model (and alignments):
>> PqiA  Paraquat-inducible protein A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.2   9.3   2.8e-09     5e-05      36     117 ..    1220    1301 ..    1216    1351 .. 0.89
   2 !   17.3   5.6   1.8e-07    0.0033      50     127 ..    1510    1584 ..    1494    1587 .. 0.87

  Alignments for each domain:
  == domain 1  score: 23.2 bits;  conditional E-value: 2.8e-09
        PqiA   36 tllsgvlalweegswlvAllvflasilvPllklllllllllslklgrrprgsrrllrlleflgrWsMldVfvvgilvalvkl 117 
                  tl++ v  +w+++ + +A++++++s +   lkl+l+++l++   ++++pr++  +lr+l++ g+W+ +d  ++ +l+ ++++
  KOO24711.1 1220 TLFNSVSDFWKSKAYWLAIIIVICSGIWTYLKLILMMFLWWVPPRRFSPRSRGAVLRVLDATGKWCLVDSAMLILLMIAMHF 1301
                  99*****************************************999999999*****************9999988766665 PP

  == domain 2  score: 17.3 bits;  conditional E-value: 1.8e-07
        PqiA   50 wlvAllvflasilvPllklllllllllslklgrrprgsrrllrlleflgrWsMldVfvvgilvalvklgdlasiepgp 127 
                  w +    +++ +++Pll ++l l+++l      rp  +r +l + e++  W+ ldV +v i+++l ++ ++a++ +g 
  KOO24711.1 1510 WGLTGFYAILCLVLPLLWIVLALIIWLVP---MRPDTLRSMLVFAETVYAWASLDVMLVVIAISLLEIDQVAKFILGS 1584
                  6666677888999****998888777766...357899**********************************998875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1661 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       587  (0.0327403); expected 358.6 (0.02)
Passed bias filter:                      340  (0.0189637); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.86u 0.29s 00:00:01.14 Elapsed: 00:00:00.45
# Mc/sec: 11081.81
//
Query:       KOO24712.1  [L=267]
Description: 20s proteasome alpha subunit f [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    5.9e-52  175.9   0.1      7e-52  175.7   0.1    1.1  1  Proteasome      Proteasome subunit
    2.7e-12   46.1   0.0    4.7e-12   45.3   0.0    1.4  1  Proteasome_A_N  Proteasome subunit A N-terminal signature


Domain annotation for each model (and alignments):
>> Proteasome  Proteasome subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  175.7   0.1   7.8e-56     7e-52       1     189 [.      29     214 ..      29     215 .. 0.97

  Alignments for each domain:
  == domain 1  score: 175.7 bits;  conditional E-value: 7.8e-56
                 HHHS-EEEEEEETTEEEEEEEEEEEETTEEEESSSSTSEEEEETTEEEEEEESHHHHHHHHHHHHHHHHHHHHHHSSGTCHHHHHHHHHHHHHHHHHHC CS
  Proteasome   1 vkkGttvvGikgkdgvvlaadkratagskllskstveKifkiddhigvafaGlaaDartlvrraraeaqlyrlrygrpipverlvarvaaklqaytqrs 99 
                 vk+G++++G++++ ++++a+ kr++  s+l s+ + +Kifkidd++g+++aGl+aDar++++++r e+ ++r+ y+ p++v rlv +va+k q  tq+ 
  KOO24712.1  29 VKQGSAAIGLRSNAFALVATLKRSS--SEL-SSYQ-KKIFKIDDNMGIGIAGLVADARVIAKYMRTECINHRYVYDAPMQVGRLVVQVADKSQIGTQQV 123
                 799**********************..999.9997.*************************************************************** PP

                 TTTTTSEEEEEEEEETTTEEEEEEEETTSEEEEESSEEEESTTHHHHHHHHHHHH..STTBSHHHHHHHHHHHHHHHHH.HBTTSCSSEEEEE CS
  Proteasome 100 grrpfgvslliagvdeeggpeLyqidpsGsyieekdavaiGsgseaaktalekey..kedltleeavelavkalkeale.rdklsgknievav 189
                 grrp+gv+ll++g d +g p+L++++psG+y+e+k a+aiG +s+a +t+lek++  +++l l++++++a+ al+e+l  +++l+  n+ v++
  KOO24712.1 124 GRRPYGVGLLVVGSDGTG-PHLFETQPSGQYFEYK-AMAIGARSQAGRTYLEKHFeeFPELGLDDLIKHALLALRETLStGQELTAANVAVGY 214
                 ***************888.***************8.********************99*******************9548999999998875 PP

>> Proteasome_A_N  Proteasome subunit A N-terminal signature
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.3   0.0   5.2e-16   4.7e-12       1      23 []       6      28 ..       6      28 .. 0.99

  Alignments for each domain:
  == domain 1  score: 45.3 bits;  conditional E-value: 5.2e-16
  Proteasome_A_N  1 YDrslttFSPdGRLfQVEYAmkA 23
                    YD+++ t+SP GR++Q+EYAm+A
      KOO24712.1  6 YDTDCITWSPAGRIHQIEYAMEA 28
                    **********************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (267 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       475  (0.0264934); expected 358.6 (0.02)
Passed bias filter:                      450  (0.025099); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.44u 0.24s 00:00:00.68 Elapsed: 00:00:00.41
# Mc/sec: 1977.36
//
Query:       KOO24713.1  [L=303]
Description: hypothetical protein Ctob_005432 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (303 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       347  (0.0193541); expected 358.6 (0.02)
Passed bias filter:                      298  (0.0166211); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.45u 0.21s 00:00:00.66 Elapsed: 00:00:00.39
# Mc/sec: 2316.63
//
Query:       KOO24714.1  [L=222]
Description: hypothetical protein Ctob_005434 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (222 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       268  (0.0149478); expected 358.6 (0.02)
Passed bias filter:                      135  (0.0075297); expected 358.6 (0.02)
Passed Vit filter:                        10  (0.000557756); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.21s 00:00:00.59 Elapsed: 00:00:00.37
# Mc/sec: 1799.58
//
Query:       KOO24715.1  [L=1180]
Description: hypothetical protein Ctob_010977 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.15   12.4   1.5         26    5.1   0.2    3.6  3  DUF2267   Uncharacterized conserved protein (DUF2267)


Domain annotation for each model (and alignments):
>> DUF2267  Uncharacterized conserved protein (DUF2267)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   0.0     0.087   1.6e+03      38      74 ..     126     161 ..     116     199 .. 0.78
   2 ?    5.1   0.2    0.0014        26      22      71 ..     604     673 ..     602     698 .. 0.75
   3 ?    3.3   0.0    0.0054        97      47      98 ..    1097    1144 ..    1045    1157 .. 0.76

  Alignments for each domain:
  == domain 1  score: -0.6 bits;  conditional E-value: 0.087
                 HHHHHHHTTS..-HHHHHHHHTT--TTS-----SHHHHH CS
     DUF2267  38 eeaadlaaqL..Peelrgllrdgwppvepgkrfdreefl 74 
                 e+a+++ + L  P el +++ ++      +k  +r+efl
  KOO24715.1 126 ENAEQINDTLdaPAELGRVFARHPTM---EKTKTRDEFL 161
                 788999999999********988644...3356677775 PP

  == domain 2  score: 5.1 bits;  conditional E-value: 0.0014
                 HHHHHHHHHHHTTS-HHHHHHHHTTS...............-HHHHHHHHTT--TTS....---.--SHH CS
     DUF2267  22 ratravLrtLrdrlteeeaadlaaqL...............Peelrgllrdgwppve....pgk.rfdre 71 
                 ++++a L  Lr+r+ e++  + ++qL                 +l++ll++++ + +      k  ++++
  KOO24715.1 604 KMVHALLVSLRERIREGNVLHTEEQLivfrgcsrrdvdsanSALLADLLEAKNVDPShvasLVKfVLGER 673
                 57899*********************99999999999999988888888777744223444333344444 PP

  == domain 3  score: 3.3 bits;  conditional E-value: 0.0054
                  S-HHHHHHHHTT--TTS-----SHHHHHHHHHHTS.....EHHHHHHHHHHH CS
     DUF2267   47 LPeelrgllrdgwppvepgkrfdreeflervaeelgvdpedaeqaaraVfaa 98  
                  LP+elrgl++ + p++  g +++  + + rv  ++      +   +ra+++a
  KOO24715.1 1097 LPNELRGLWNHKLPDAPDGTKRTFGDAILRVVSDA----VGPSITTRAIVEA 1144
                  7********99997765666777777777777777....3455555555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1180 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       330  (0.0184059); expected 358.6 (0.02)
Passed bias filter:                      301  (0.0167884); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.70u 0.24s 00:00:00.94 Elapsed: 00:00:00.43
# Mc/sec: 8317.54
//
Query:       KOO24716.1  [L=816]
Description: kinesin heavy chain [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
      2e-82  276.8   0.0    6.5e-82  275.1   0.0    1.9  1  Kinesin        Kinesin motor domain
    1.4e-26   93.2   0.0      4e-26   91.7   0.0    1.8  1  Microtub_bd    Microtubule binding
  ------ inclusion threshold ------
      0.072   13.2   0.1        0.2   11.7   0.1    1.7  1  AdoHcyase_NAD  S-adenosyl-L-homocysteine hydrolase, NAD bindi
        6.4    6.5   9.0        0.3   10.9   2.8    2.0  2  TIR            TIR domain


Domain annotation for each model (and alignments):
>> Kinesin  Kinesin motor domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  275.1   0.0   1.5e-85   6.5e-82       1     333 []     312     671 ..     312     671 .. 0.92

  Alignments for each domain:
  == domain 1  score: 275.1 bits;  conditional E-value: 1.5e-85
                 EE-SSSHHHHTTTTEBCEEEECTCTCEEEEEEEEECTTSCEEEEESEEEETTS-HHHHHHHHHHHHHHHHHTTSEEEEEEEESTTSSHHHHHTBCTTTS CS
     Kinesin   1 RvRplnekekeeeeeeeveveeekkeeekkskkenkeeeekkfkFdkvfdeeatqeevyeetakplvesvleGynatifaYGqtgsGKTyTmegkeeee 99 
                 R Rpl+++e  + e+ +v+v + +    +     + + ++ + +Fd++f++ +t++++y+e+ +p ++svl+G+ ++++aYGqtg+GK+yTm+g   +e
  KOO24716.1 312 RARPLSATEIGKGESPVVSVPAYNLIALQAPPPPDGDGARVECAFDACFGSVCTTQQLYDEV-SPAITSVLQGQYVCVMAYGQTGAGKSYTMQGA-GSE 408
                 88999999999999999999988888888888899999999********************6.*******************************8.999 PP

                 BSHHHHHHHHHHHHHHHCTTTH.....EEEEEEEEEEEEEETTEEEETTSTTT......TSTSSEBEEEECTTSCCEEETTS--EEESSHHHHHHHHHH CS
     Kinesin 100 eGiipraleelFesikkekeek.....ekefsvkvsylEiYneeiyDLLeskk......skkkkklkiredskkgevyvkgltevevksaeevlellek 187
                 +G++  a++el ++ +  +ee        e+ +++s+lE+Yne++ DLL++k       +  +  l++r  ++ g+v v  lt+  ++s e v e l  
  KOO24716.1 409 PGLVHLACDELLREARLLEEEYarraePLEVLFTCSMLEVYNEKVLDLLHEKIhdergrEVVADALEVRAAAD-GTVSVPHLTTLPFESGEAVAEHLTA 506
                 *************998777655555557789999****************99877665544445999999999.67*********************** PP

                 HHHHHTSTTSSCTSHHCCSEEEEEEEEEEEETTTTTCEEEEEEEEEEEEEEECCCHHHHSSTCHHHHHHHHHHHHHHHHHHHHHHHHHHT......... CS
     Kinesin 188 geknrkvaetklneeSSRSHavftitleqknlkeeteekvkisklnLvDLAGsErasktgaaegerlkEaaniNkSLlaLgrvisaLaek......... 277
                 + k+r++++t +n++SSRSH v+t++++ +n+ ++te   +++kl+LvDLAGsEr+ k+g  +ge+l+Ea++iNkSL+aL+ v+++L e+         
  KOO24716.1 507 AGKRRHTHATLMNAASSRSHLVLTVHVTLRNTRDDTE---RTGKLHLVDLAGSERVGKSGV-QGEQLREAQHINKSLSALELVMTSLHERsrkalgkeg 601
                 *******************************998777...99******************6.6888********************************* PP

                 ...........CCTSTSCGGGSHHHHHTGGGHSSS...SEEEEEEEE-TBGGGHHHHHHHHHHHHHHCTT CS
     Kinesin 278 ...........kkskhipYRdSkLTrlLqdsLgGn...sktlmivtvspssenleetlstlkfaerakei 333
                                hipYR+SkLT lL d+Lg +   +kt+mi++ sp++ n+ e+l+tl+f+er++ +
  KOO24716.1 602 aggeeggakegGGGVHIPYRNSKLTLLLSDALGAKgscAKTIMIMQASPAACNAVESLRTLRFGERCQAV 671
                 ********9998999*****************97633369**************************9875 PP

>> Microtub_bd  Microtubule binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   91.7   0.0     9e-30     4e-26       4     149 .]     289     457 ..     286     457 .. 0.85

  Alignments for each domain:
  == domain 1  score: 91.7 bits;  conditional E-value: 9e-30
                  HHHHHHHCHHHHHHHCTB-EEEEEEECCCS-T.............EEEETTT.............TTTEEEE-SEEEECTTHCCCCCCCCHHHHHHHH CS
  Microtub_bd   4 eetlRrkleNtiqelkGniRvfarvrpelesek............akikfpe..........eekkkkkefsFdrvfeseseqeevfeeisqlvqsal 79 
                     +Rr+  N++qe  G iRv +r rp + +e             +     +          + +  + e  Fd +f s ++++++++e+s  ++s+l
   KOO24716.1 289 MAVRRREACNKLQEASGAIRVLCRARPLSATEIgkgespvvsvpaY-----NlialqappppDGDGARVECAFDACFGSVCTTQQLYDEVSPAITSVL 381
                  5689***************************987777755444330.....14555567788778999****************************** PP

                  TT--EEEEEEES................ST-HCHHHHHHHHHHCCTS......CCCCEEEEEEEEEEESS-EEETT CS
  Microtub_bd  80 dgynvcifaygqTGsGKtyTmegeeeeagmipraveeifetiselke......kgwkyeielqfveiynekvqDlL 149
                  +g  vc++aygqTG+GK+yTm+g  +e+g ++ a +e++++++ l+e      +  ++ ++++++e+ynekv DlL
   KOO24716.1 382 QGQYVCVMAYGQTGAGKSYTMQGAGSEPGLVHLACDELLREARLLEEeyarraEPLEVLFTCSMLEVYNEKVLDLL 457
                  ***************************************99987765211111334567899*************8 PP

>> AdoHcyase_NAD  S-adenosyl-L-homocysteine hydrolase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.1   4.4e-05       0.2       5      47 ..     365     407 ..     362     414 .. 0.91

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 4.4e-05
                    HCCCCCHHHHHHH-S--TTSEEEEE--SHHHHHHHHHHHHCT- CS
  AdoHcyase_NAD   5 creslvdgikratdvllaGkvavvaGyGdvGkGcaaslkglGa 47 
                    + + l d +  a   +l G+ ++v+ yG+ G G + +++g+G+
     KOO24716.1 365 TTQQLYDEVSPAITSVLQGQYVCVMAYGQTGAGKSYTMQGAGS 407
                    56789999999*****************************997 PP

>> TIR  TIR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   2.8   6.7e-05       0.3     112     166 ..      72     125 ..      61     132 .. 0.85
   2 ?   -3.2   0.2       1.4   6.4e+03      76      92 ..     239     255 ..     209     290 .. 0.56

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 6.7e-05
                 HHHHCHCCCCCCHHTTTHHHHHHHHHHSTTTTCCHHHHHHCCCCSHHHHCH-XXX CS
         TIR 112 slgeafkklkkvlkeekvlkWrealteksvkdeskfikkirkaikseklkkttts 166
                 +l+ ++++++++  ++++++Wr+al + s ++ +k +++++ ++ks+++k+ t +
  KOO24716.1  72 ELAASLQEAQRQAAQQQAHEWRAALLQAS-QEHAKVVEQLQAQLKSSEEKQLTLQ 125
                 688999*******999********88877.8899**********88888887766 PP

  == domain 2  score: -3.2 bits;  conditional E-value: 1.4
                 CHHHHHHHCHHH-CTST CS
         TIR  76 leElekilecalvekgq 92 
                 + El+++l  a+ ++++
  KOO24716.1 239 VAELQAALRAARQSSEA 255
                 33444444444433333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (816 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      3315  (0.184896); expected 358.6 (0.02)
Passed bias filter:                      733  (0.0408835); expected 358.6 (0.02)
Passed Vit filter:                       160  (0.00892409); expected 17.9 (0.001)
Passed Fwd filter:                        65  (0.00362541); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 1.56u 0.39s 00:00:01.95 Elapsed: 00:00:00.58
# Mc/sec: 4261.52
//
Query:       KOO24717.1  [L=1495]
Description: hypothetical protein Ctob_010975 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.9e-08   32.8   0.0    1.5e-07   31.7   0.0    1.6  1  EF-hand_7  EF-hand domain pair
    8.3e-08   31.6   0.6      7e-05   22.4   0.1    2.6  2  EF-hand_6  EF-hand domain
    1.4e-06   27.4   0.0    0.00013   21.3   0.0    2.5  2  EF-hand_1  EF hand
    0.00011   21.5   0.1    0.00034   20.0   0.0    1.9  2  EF-hand_5  EF hand


Domain annotation for each model (and alignments):
>> EF-hand_7  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.7   0.0   3.4e-11   1.5e-07       6      71 .]    1239    1298 ..    1236    1298 .. 0.94

  Alignments for each domain:
  == domain 1  score: 31.7 bits;  conditional E-value: 3.4e-11
   EF-hand_7    6 eaFkelDtdgdgyldkeellrllrkifqgagegsklsdeelellfkefDtdkdGvisfdEFlklyr 71  
                  +aF+ +D d++g++d++el+++l+      + g +ls     +++   D + dG+++++EF +l+r
  KOO24717.1 1239 QAFDRFDADHSGFIDRAELHEALH------HYGIDLSGPGTAAVLARYDDTPDGQMDLSEFAELVR 1298
                  68**********************......899999999999*******************99875 PP

>> EF-hand_6  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.4   0.1   1.6e-08     7e-05       3      28 ..    1238    1263 ..    1236    1270 .. 0.88
   2 !    6.8   0.1    0.0016       7.3       8      29 ..    1279    1299 ..    1275    1305 .. 0.87

  Alignments for each domain:
  == domain 1  score: 22.4 bits;  conditional E-value: 1.6e-08
   EF-hand_6    3 reaFklfDkdgdGkidaeElrkalrk 28  
                   +aF+ fD d++G+id++El  al +
  KOO24717.1 1238 VQAFDRFDADHSGFIDRAELHEALHH 1263
                  68*********************984 PP

  == domain 2  score: 6.8 bits;  conditional E-value: 0.0016
   EF-hand_6    8 lfDkdgdGkidaeElrkalrka 29  
                   +D + dG+ d +E+  + r +
  KOO24717.1 1279 RYDDTPDGQMDLSEFAELVR-D 1299
                  79*************99998.4 PP

>> EF-hand_1  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.3   0.0   2.8e-08   0.00013       4      28 ..    1239    1263 ..    1236    1264 .. 0.90
   2 ?    3.6   0.0     0.013        57      14      28 ..    1285    1299 ..    1276    1300 .. 0.88

  Alignments for each domain:
  == domain 1  score: 21.3 bits;  conditional E-value: 2.8e-08
                  HHHHHHTTTSSSEEEHHHHHHHHHH CS
   EF-hand_1    4 eiFrefDkDgdGkIdfeEfkellkk 28  
                  ++F+ fD D++G+Id+ E+ e+l +
  KOO24717.1 1239 QAFDRFDADHSGFIDRAELHEALHH 1263
                  89******************99975 PP

  == domain 2  score: 3.6 bits;  conditional E-value: 0.013
                  SSEEEHHHHHHHHHH CS
   EF-hand_1   14 dGkIdfeEfkellkk 28  
                  dG++d++Ef el+++
  KOO24717.1 1285 DGQMDLSEFAELVRD 1299
                  9**********9986 PP

>> EF-hand_5  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.0   0.0   7.6e-08   0.00034       3      23 ..    1239    1259 ..    1237    1262 .. 0.86
   2 ?   -2.5   0.0      0.95   4.3e+03      13      25 .]    1285    1297 ..    1279    1297 .. 0.88

  Alignments for each domain:
  == domain 1  score: 20.0 bits;  conditional E-value: 7.6e-08
                  HHHHHH-SS-SSCE-HHHHHH CS
   EF-hand_5    3 dtFqaiDlNgDGkIskeELkt 23  
                  ++F+++D++++G+I++ EL +
  KOO24717.1 1239 QAFDRFDADHSGFIDRAELHE 1259
                  56****************965 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 0.95
                  SSCE-HHHHHHHH CS
   EF-hand_5   13 DGkIskeELktlv 25  
                  DG+ + +E+ +lv
  KOO24717.1 1285 DGQMDLSEFAELV 1297
                  899999***9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1495 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1487  (0.0829383); expected 358.6 (0.02)
Passed bias filter:                      412  (0.0229795); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 1.01u 0.27s 00:00:01.28 Elapsed: 00:00:00.48
# Mc/sec: 9325.05
//
Query:       KOO24718.1  [L=288]
Description: hypothetical protein Ctob_002956 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (288 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       444  (0.0247643); expected 358.6 (0.02)
Passed bias filter:                      238  (0.0132746); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.44u 0.24s 00:00:00.68 Elapsed: 00:00:00.40
# Mc/sec: 2138.40
//
Query:       KOO24719.1  [L=270]
Description: hypothetical protein Ctob_002957 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    5.3e-05   23.3   0.0    8.4e-05   22.7   0.0    1.5  1  Methyltransf_21  Methyltransferase FkbM domain


Domain annotation for each model (and alignments):
>> Methyltransf_21  Methyltransferase FkbM domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.7   0.0   4.7e-09   8.4e-05      74     156 ..     147     233 ..      86     263 .. 0.76

  Alignments for each domain:
  == domain 1  score: 22.7 bits;  conditional E-value: 4.7e-09
  Methyltransf_21  74 avgdtngfstssvlggedaryievpvvtldsfleei.kksrid..llkiDvEGaElevL.....eGaqkglkrcqpnlivvEvhkfk.efet 156
                      a+ +  +f+ +   g++ + +++++++  ++fle   + +  d  ++k+DvEG+E+++       G   +++      i++Evh  + + ++
       KOO24719.1 147 ATFSRRHFFLQAFIGSRSKPETTPSTIGFSDFLETTlGLQPADavVVKMDVEGYEFDIVqtllaDGTHALIDE-----IMLEVHYGHpYMRQ 233
                      444444455554444777888999999999**99999666666559*************77766666777777.....78999998866555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (270 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       259  (0.0144459); expected 358.6 (0.02)
Passed bias filter:                      235  (0.0131073); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.25s 00:00:00.67 Elapsed: 00:00:00.41
# Mc/sec: 1959.82
//
Query:       KOO24720.1  [L=196]
Description: hypothetical protein Ctob_002955 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.014   15.8   0.0       0.14   12.6   0.0    2.0  2  EF-hand_7  EF-hand domain pair
       0.02   14.4   0.3      0.065   12.7   0.0    2.0  2  EF-hand_5  EF hand


Domain annotation for each model (and alignments):
>> EF-hand_7  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   1.6e-05      0.14      36      68 ..      85     117 ..      46     120 .. 0.77
   2 ?    1.0   0.0     0.066   5.9e+02      36      61 ..     159     188 ..     141     190 .. 0.66

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 1.6e-05
   EF-hand_7  36 gegsklsdeelellfkefDtdkdGvisfdEFlk 68 
                 ++ +++   +l++l+  +D d  G+is++E+++
  KOO24720.1  85 SRRDEVAVVSLQRLMLAIDADAEGSISRSELRT 117
                 5555557778********************986 PP

  == domain 2  score: 1.0 bits;  conditional E-value: 0.066
   EF-hand_7  36 gegsklsdee....lellfkefDtdkdGvi 61 
                 +++ kl  ++     e ++ e+ ++ dG++
  KOO24720.1 159 ERQQKLAVQQgereFEFFWSELKKNADGRV 188
                 445555554433337888888899999998 PP

>> EF-hand_5  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   7.3e-06     0.065       5      23 ..      99     117 ..      95     120 .. 0.84
   2 ?   -1.9   0.1      0.31   2.8e+03      10      16 ..     182     188 ..     182     189 .. 0.85

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 7.3e-06
                 HHHH-SS-SSCE-HHHHHH CS
   EF-hand_5   5 FqaiDlNgDGkIskeELkt 23 
                   aiD++  G Is++EL+t
  KOO24720.1  99 MLAIDADAEGSISRSELRT 117
                 569**************98 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 0.31
                 SS-SSCE CS
   EF-hand_5  10 lNgDGkI 16 
                 +N DG++
  KOO24720.1 182 KNADGRV 188
                 699**97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (196 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       573  (0.0319594); expected 358.6 (0.02)
Passed bias filter:                      397  (0.0221429); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.38u 0.26s 00:00:00.64 Elapsed: 00:00:00.39
# Mc/sec: 1510.61
//
Query:       KOO24721.1  [L=177]
Description: hypothetical protein Ctob_002959 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    3.5e-10   38.7   0.2    1.7e-05   24.0   0.0    2.3  2  EF-hand_1     EF hand
    4.4e-09   35.4   1.1     0.0031   16.9   0.1    2.5  2  EF-hand_5     EF hand
    1.1e-08   35.4   0.3    2.3e-08   34.3   0.3    1.5  1  EF-hand_7     EF-hand domain pair
    5.8e-07   28.9   0.2      0.038   13.9   0.0    2.3  2  EF-hand_6     EF-hand domain
    2.5e-05   24.1   0.8     0.0034   17.2   0.1    2.3  2  EF-hand_8     EF-hand domain pair
     0.0056   17.0   0.1     0.0079   16.5   0.1    1.1  1  SPARC_Ca_bdg  Secreted protein acidic and rich in cysteine Ca


Domain annotation for each model (and alignments):
>> EF-hand_1  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.6   0.0   2.5e-05     0.075       6      24 ..     114     132 ..     113     135 .. 0.91
   2 !   24.0   0.0   5.7e-09   1.7e-05       2      28 ..     143     169 ..     142     170 .. 0.94

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 2.5e-05
                 HHHHTTTSSSEEEHHHHHH CS
   EF-hand_1   6 FrefDkDgdGkIdfeEfke 24 
                 F+++D+D++G+++  E+ +
  KOO24721.1 114 FEKIDTDRSGTLEVTELND 132
                 99**************965 PP

  == domain 2  score: 24.0 bits;  conditional E-value: 5.7e-09
                 HHHHHHHHTTTSSSEEEHHHHHHHHHH CS
   EF-hand_1   2 lkeiFrefDkDgdGkIdfeEfkellkk 28 
                 ++e+++ +D +gdG++df+E+++++k+
  KOO24721.1 143 CDELMQSIDNNGDGRVDFNEYVSWVKR 169
                 699*********************997 PP

>> EF-hand_5  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   0.1   1.1e-06    0.0031       4      22 ..     113     131 ..     109     133 .. 0.88
   2 !   16.9   0.1   1.1e-06    0.0032       4      21 ..     146     163 ..     144     168 .. 0.88

  Alignments for each domain:
  == domain 1  score: 16.9 bits;  conditional E-value: 1.1e-06
                 HHHHH-SS-SSCE-HHHHH CS
   EF-hand_5   4 tFqaiDlNgDGkIskeELk 22 
                  F++iD++++G++ + EL 
  KOO24721.1 113 RFEKIDTDRSGTLEVTELN 131
                 5****************95 PP

  == domain 2  score: 16.9 bits;  conditional E-value: 1.1e-06
                 HHHHH-SS-SSCE-HHHH CS
   EF-hand_5   4 tFqaiDlNgDGkIskeEL 21 
                 + q iD NgDG++++ E 
  KOO24721.1 146 LMQSIDNNGDGRVDFNEY 163
                 7899***********996 PP

>> EF-hand_7  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.3   0.3   7.8e-12   2.3e-08       7      70 ..     113     167 ..     110     168 .. 0.84

  Alignments for each domain:
  == domain 1  score: 34.3 bits;  conditional E-value: 7.8e-12
   EF-hand_7   7 aFkelDtdgdgyldkeellrllrkifqgagegsklsdeelellfkefDtdkdGvisfdEFlkly 70 
                 +F+++Dtd++g l+++el ++  +i     e+ +  d    +l++ +D ++dG+++f+E++ ++
  KOO24721.1 113 RFEKIDTDRSGTLEVTELNDAGMCI----LEDGS-CD----ELMQSIDNNGDGRVDFNEYVSWV 167
                 7******************744443....55555.44....9******************9987 PP

>> EF-hand_6  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.9   0.0   1.3e-05     0.038       6      25 ..     114     133 ..     113     135 .. 0.94
   2 !   12.7   0.0   3.1e-05     0.093       7      27 ..     148     168 ..     143     173 .. 0.84

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 1.3e-05
   EF-hand_6   6 FklfDkdgdGkidaeElrka 25 
                 F+++D+d++G++   El +a
  KOO24721.1 114 FEKIDTDRSGTLEVTELNDA 133
                 99***************886 PP

  == domain 2  score: 12.7 bits;  conditional E-value: 3.1e-05
   EF-hand_6   7 klfDkdgdGkidaeElrkalr 27 
                 + +D++gdG +d++E +++ +
  KOO24721.1 148 QSIDNNGDGRVDFNEYVSWVK 168
                 679************887766 PP

>> EF-hand_8  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.2   0.0    0.0063        19      32      47 ..     114     129 ..     113     133 .. 0.88
   2 !   17.2   0.1   1.1e-06    0.0034      26      54 ..     141     169 ..     134     170 .. 0.87

  Alignments for each domain:
  == domain 1  score: 5.2 bits;  conditional E-value: 0.0063
   EF-hand_8  32 frefDtdgdGkisfeE 47 
                 f ++Dtd++G++  +E
  KOO24721.1 114 FEKIDTDRSGTLEVTE 129
                 6789*******99888 PP

  == domain 2  score: 17.2 bits;  conditional E-value: 1.1e-06
   EF-hand_8  26 eevdilfrefDtdgdGkisfeEFcvller 54 
                   +d+l+  +D +gdG+++f+E++  ++r
  KOO24721.1 141 GSCDELMQSIDNNGDGRVDFNEYVSWVKR 169
                 569********************987776 PP

>> SPARC_Ca_bdg  Secreted protein acidic and rich in cysteine Ca binding region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.1   2.7e-06    0.0079      59     111 ..     113     164 ..     109     166 .. 0.91

  Alignments for each domain:
  == domain 1  score: 16.5 bits;  conditional E-value: 2.7e-06
  SPARC_Ca_bdg  59 kFsklDtnsdkvlsksELaplraplvklehCikpflescDadkdkkislkEwc 111
                   +F+k+Dt++ ++l+ +EL++  + + +  +C +++++s D + d++++ +E++
    KOO24721.1 113 RFEKIDTDRSGTLEVTELNDAGMCILEDGSC-DELMQSIDNNGDGRVDFNEYV 164
                   79*********************87777777.789****************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (177 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       289  (0.0161191); expected 358.6 (0.02)
Passed bias filter:                      252  (0.0140554); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.38u 0.23s 00:00:00.61 Elapsed: 00:00:00.38
# Mc/sec: 1408.01
//
Query:       KOO24722.1  [L=535]
Description: ubiquitin-protein pub49 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    6.9e-50  169.4   0.0    1.5e-49  168.3   0.0    1.6  1  Pro_isomerase  Cyclophilin type peptidyl-prolyl cis-trans iso
    2.1e-05   24.0   0.3    9.9e-05   21.8   0.1    2.1  2  Rtf2           Rtf2 RING-finger
    0.00046   20.3   0.1      0.002   18.2   0.0    2.1  2  zf-NOSIP       Zinc-finger of nitric oxide synthase-interacti


Domain annotation for each model (and alignments):
>> Pro_isomerase  Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  168.3   0.0   2.5e-53   1.5e-49       1     155 [.     265     413 ..     265     416 .. 0.93

  Alignments for each domain:
  == domain 1  score: 168.3 bits;  conditional E-value: 2.5e-53
  Pro_isomerase   1 lvdietsskGrivieLfadkaPktvenFlklvkegfYdgttFhRvikgfmvqgGdptgktsageqekkggesiraipdEitsklkh.krGalamar 95 
                    +v+++ts +G++++eL  d aP t++nFl+l+++g+Ydgt+FhR+i++fm+qgGdptg++s ge+   gg    +++dEi+ klkh  rG+l+ma+
     KOO24722.1 265 YVQLRTS-HGTLNLELRVDCAPRTCDNFLQLIERGYYDGTSFHRLIRNFMLQGGDPTGTGSGGES-AWGG----KFADEISGKLKHdGRGVLSMAN 354
                    6899**6.***************************************************885553.3333....599****9999999******** PP

  Pro_isomerase  96 tgkepnsagsqFfItlkeaphldgkytvFGkVveGmdvvekiekvetde.erpkknvkivs 155
                    +g  pns+gsqFf+t+k a hldgk+tvFG Vv G+d++ +ie+++td+ +rp ++v++  
     KOO24722.1 355 SG--PNSNGSQFFLTFKSAAHLDGKHTVFGSVVGGLDTLARIEALPTDKdDRPLEPVTLLG 413
                    *8..8**************************************************999865 PP

>> Rtf2  Rtf2 RING-finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.8   0.1   1.7e-08   9.9e-05     108     222 ..      96     236 ..      37     273 .. 0.67
   2 ?   -1.0   0.0      0.15   9.1e+02     166     204 ..     416     454 ..     412     516 .. 0.68

  Alignments for each domain:
  == domain 1  score: 21.8 bits;  conditional E-value: 1.7e-08
        Rtf2 108 kdtkeapfiCpltglemngktkfvalrkCGcVfsekalkevk....sev.ClvCgkeykeedvipln.ptkeelellkarl...eeekakkkkkkkakk 197
                 + ++e +++Cp+  + +  +t+ va+++ G V+   a+k++     +    l  + +++ +dv  +  pt++e  +l++        + + k +   ++
  KOO24722.1  96 HRNAEGQYACPVLFKPFTQHTHIVAIKTTGNVYCYDAVKQMNlktnD-LrDLLDQMPFTRADVLHIQdPTNSERRELEHFNhvnAGLEVELKDSGGVRH 193
                 567899**********************************9754441.13567899*******999635565666665433000333334444444555 PP

        Rtf2 198 kkkakakgskaeaeaaskssseas..................e 222
                 +++++ + ++  a++as+++sea                   +
  KOO24722.1 194 NEATARIMQQVAAASASATPSEAAikttgaasasftstsvpvQ 236
                 5555555555555555555544444555444333333333321 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 0.15
        Rtf2 166 iplnptkeelellkarleeekakkkkkkkakkkkkakak 204
                 i +np  + ++++ a+l e++    ++ ++k+k +a+++
  KOO24722.1 416 IFVNPFADIDAKMDAALAEKANPGAAAAAEKAKRAAEDA 454
                 677887777777777777766665555544444444333 PP

>> zf-NOSIP  Zinc-finger of nitric oxide synthase-interacting protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.2   0.0   3.4e-07     0.002      24      71 ..      25      72 ..       5      75 .. 0.82
   2 ?   -2.9   0.0       1.3   7.6e+03       6      16 ..     123     133 ..     121     138 .. 0.73

  Alignments for each domain:
  == domain 1  score: 18.2 bits;  conditional E-value: 3.4e-07
    zf-NOSIP 24 gygtqsvrlikdavkdfdccslslqacrdpvltedgylyekeaileyi 71
                g g qs+         fdcc++s+++ + p+ t+dg ++e   ++ y+
  KOO24722.1 25 GAGKQSMARLPYKTLPFDCCAISFRPFETPLCTDDGIIFELLNVVPYL 72
                6677777666666668***********************988887775 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 1.3
    zf-NOSIP   6 tagavytyhek 16 
                 t+g vy y   
  KOO24722.1 123 TTGNVYCYDAV 133
                 77888988754 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (535 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       743  (0.0414412); expected 358.6 (0.02)
Passed bias filter:                      511  (0.0285013); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.54u 0.25s 00:00:00.79 Elapsed: 00:00:00.39
# Mc/sec: 4131.25
//
Query:       KOO24723.1  [L=436]
Description: hypothetical protein Ctob_002960 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
     0.0015   18.3   0.0     0.0022   17.8   0.0    1.2  1  PC-Esterase  GDSL/SGNH-like Acyl-Esterase family found in Pmr


Domain annotation for each model (and alignments):
>> PC-Esterase  GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.8   0.0   1.2e-07    0.0022     225     281 ..     376     426 ..     349     428 .. 0.83

  Alignments for each domain:
  == domain 1  score: 17.8 bits;  conditional E-value: 1.2e-07
  PC-Esterase 225 ktrvellditklselRkDgHpsvyrkkkekakaeksqnDClHWCLpGvpDtWnelLl 281
                  + ++++l++t++s+ R+D+ + +  + +      + +  C  +C pG+p +W e+L 
   KOO24723.1 376 RAKLSILNLTHMSATRADALIPTAAGGQ------HPRGACEAYCYPGMPHVWAEMLT 426
                  67899**************988888864......45678****************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (436 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       345  (0.0192426); expected 358.6 (0.02)
Passed bias filter:                      243  (0.0135535); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.26s 00:00:00.70 Elapsed: 00:00:00.39
# Mc/sec: 3329.22
//
Query:       KOO24724.1  [L=661]
Description: leucine rich repeat family protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.031   13.9   0.1        1.2    8.8   0.0    2.5  2  DUF3291   Domain of unknown function (DUF3291)


Domain annotation for each model (and alignments):
>> DUF3291  Domain of unknown function (DUF3291)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.4   0.0    0.0065   1.2e+02      38      72 ..     155     193 ..     137     203 .. 0.69
   2 ?    8.8   0.0   6.9e-05       1.2      81     121 ..     381     420 ..     330     430 .. 0.79

  Alignments for each domain:
  == domain 1  score: 2.4 bits;  conditional E-value: 0.0065
     DUF3291  38 fvwrleeeegdatalrafeddl..liv.....nlsvWeslea 72 
                 fv r + ee     +++ e+++  ++v     ++svW++ e+
  KOO24724.1 155 FVIREQVEEVV---IKVAEKPKakVVVerwnlSMSVWAEREK 193
                 67777666666...444444443333355555*****99875 PP

  == domain 2  score: 8.8 bits;  conditional E-value: 6.9e-05
     DUF3291  81 ehaevlrrrrewfekleeaalvlWwvpaghrPtveeaverL 121
                    +++ +rrew+e l     v+ +v++g++ +v++a+ rL
  KOO24724.1 381 VNPNAMLNRREWMEMLV-RVCVMRYVQTGEMSDVSDALGRL 420
                 56789999*****9887.679******************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (661 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       673  (0.037537); expected 358.6 (0.02)
Passed bias filter:                      511  (0.0285013); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.59u 0.27s 00:00:00.86 Elapsed: 00:00:00.43
# Mc/sec: 4639.80
//
Query:       KOO24725.1  [L=329]
Description: methyltransferase family, partial [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      1e-11   45.2   0.0    1.7e-11   44.5   0.0    1.3  1  Methyltransf_21  Methyltransferase FkbM domain
  ------ inclusion threshold ------
      0.013   15.5   1.1      0.023   14.7   0.4    1.7  2  LRV_FeS          LRV protein FeS4 cluster


Domain annotation for each model (and alignments):
>> Methyltransf_21  Methyltransferase FkbM domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.5   0.0   1.9e-15   1.7e-11       4     151 ..     106     249 ..     103     277 .. 0.76

  Alignments for each domain:
  == domain 1  score: 44.5 bits;  conditional E-value: 1.9e-15
  Methyltransf_21   4 anigvwdsfanltarlcggggevlaiEPvpns.lpkfeklranlltlavgndvglyelivegksggkyfpfavgdtngfstssvlggedaryie 96 
                       n+  w+s++++ ++ +g++g    iEP+p + ++  ++ +++l + +v++   ++e+i+++     + ++a     + s  +   +++++ ++
       KOO24725.1 106 SNDAMWASNTYFLEQCLGWRGLC--IEPNPVHhERIRAERKCTLVPSCVSDAAKTIEMILPDS----FHGGAARVVKQQSDLRL--ARNKKPVQ 191
                      67888*******99999999977..********777777779999***************888....33333333333333333..489***** PP

  Methyltransf_21  97 vpvvtldsfleeikksridllkiDvEGaElevL......eGaqkglkrcqpnlivvEvhkf 151
                      ++++tl s+l e+k ++id++ +D+EG+E e++       G+++g+++    +++ E +++
       KOO24725.1 192 MECRTLRSILHEHKVKHIDFMSLDIEGHEPEAMstlkldHGGEHGVTI---DVVSAETNSS 249
                      *****************************9988666776666666655...4555565555 PP

>> LRV_FeS  LRV protein FeS4 cluster
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.7   0.4   2.6e-06     0.023       2      37 ..     122     156 ..     121     161 .. 0.90
   2 ?   -2.7   0.0      0.72   6.4e+03      24      41 ..     193     210 ..     191     212 .. 0.84

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 2.6e-06
     LRV_FeS   2 ldWqGeevdCasCehrellaeGrCelgkaCvadrya 37 
                 l W+G  ++ +  +h+ ++ae +C+l  +Cv d+ a
  KOO24725.1 122 LGWRGLCIEPNPVHHERIRAERKCTLVPSCVSDA-A 156
                 78******************************97.4 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 0.72
     LRV_FeS  24 rCelgkaCvadryarrid 41 
                 +C+  ++ +++ + ++id
  KOO24725.1 193 ECRTLRSILHEHKVKHID 210
                 589999999999999998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (329 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       503  (0.0280551); expected 358.6 (0.02)
Passed bias filter:                      387  (0.0215851); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.47u 0.23s 00:00:00.70 Elapsed: 00:00:00.41
# Mc/sec: 2397.04
//
Query:       KOO24726.1  [L=303]
Description: hypothetical protein Ctob_002965 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (303 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      3608  (0.201238); expected 358.6 (0.02)
Passed bias filter:                      701  (0.0390987); expected 358.6 (0.02)
Passed Vit filter:                       157  (0.00875676); expected 17.9 (0.001)
Passed Fwd filter:                        50  (0.00278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 1.10u 0.35s 00:00:01.45 Elapsed: 00:00:00.56
# Mc/sec: 1616.69
//
Query:       KOO24727.1  [L=268]
Description: hypothetical protein Ctob_002966 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
  ------ inclusion threshold ------
       0.01   15.4  43.6      0.027   14.0  20.6    3.5  3  Filament         Intermediate filament protein
      0.028   14.4   0.4      0.028   14.4   0.4    3.5  4  DUF1664          Protein of unknown function (DUF1664)
      0.069   13.2  40.0       0.62   10.1   9.0    4.2  5  TMF_DNA_bd       TATA element modulatory factor 1 DNA binding
       0.44   10.6  24.5        1.5    8.8   6.7    3.9  4  Baculo_PEP_C     Baculovirus polyhedron envelope protein, PEP
       0.46   11.1  21.6        1.9    9.1   4.2    3.4  3  YabA             Initiation control protein YabA
        0.5   10.6   0.2        0.5   10.6   0.2    4.4  3  cwf21            cwf21 domain
       0.64   10.2  55.7      0.095   12.9  25.3    3.2  3  ATG16            Autophagy protein 16 (ATG16)
        2.5    8.4  25.2        0.7   10.1   0.6    4.8  5  T3SS_needle_F    Type III secretion needle MxiH, YscF, SsaG, 
        5.4    7.2  13.2        1.3    9.2   5.8    2.2  2  XLF              XLF-Cernunnos, XRcc4-like factor, NHEJ compo
        8.5    6.7   9.0       0.89    9.9   2.0    2.5  3  CHMI             5-carboxymethyl-2-hydroxymuconate isomerase
        9.5    6.8  11.2         37    4.9   0.1    3.7  4  Glucosaminidase  Mannosyl-glycoprotein endo-beta-N-acetylgluc


Domain annotation for each model (and alignments):
>> Filament  Intermediate filament protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0  20.6   1.7e-05     0.027     169     297 ..      33     161 ..      26     164 .. 0.83
   2 ?    9.7   6.1   0.00035      0.57     238     301 ..     155     218 ..     150     221 .. 0.94
   3 ?    6.4   6.0    0.0035       5.6     235     281 ..     205     251 ..     201     262 .. 0.88

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 1.7e-05
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-HHHHHHHHHHHHHHHHHHHHHH.HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
    Filament 169 eilkeiraqyeelaeknreeaeewykskleelqeaaeknsealrsakeeitelrrqiqsleieleslk.kqkasleaqlaeleerleaeleklqeklse 266
                 e+l+  r+  e+ +++ r+++ +  ksk e +++  e   ++l++++ + +e++r +++  ++ e++  +++asle++la ++++ +++ e lq+++ e
  KOO24727.1  33 EALRAARRALEADVANLRDDLAASAKSKSEAAKQ-LEVARAELETVRAQRSEAQRALERTVADKEAQLaAAQASLETRLARTQAQSSEAQEALQKMVGE 130
                 689999**********************988765.455555666666666666666666666555443145789************************* PP

                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
    Filament 267 leeelaeireemarqlreYqeLLdvKlaLdi 297
                  e++l+ ++ee+ + l+e + L   + aL++
  KOO24727.1 131 REAQLTAAQEELRKSLEETSCLVAAQAALET 161
                 ***********************99999997 PP

  == domain 2  score: 9.7 bits;  conditional E-value: 0.00035
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
    Filament 238 qkasleaqlaeleerleaeleklqeklseleeelaeireemarqlreYqeLLdvKlaLdiEIat 301
                 ++a+le++lae  ++ +++ + l e+++e+e +la +ree+  +++e  +L   + aL+  +a+
  KOO24727.1 155 AQAALETKLAESRDQSSKAQAALLEQVAEKEVQLAAAREELRWNVEEKASLAAAQAALEARVAA 218
                 6899************************************************999999998876 PP

  == domain 3  score: 6.4 bits;  conditional E-value: 0.0035
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
    Filament 235 lkkqkasleaqlaeleerleaeleklqeklseleeelaeireemarq 281
                 l +++a+lea++a +e++ +++ + l ++++e+e++lae+++ ++r 
  KOO24727.1 205 LAAAQAALEARVAATEAQSSQAQAALSRQVAEKEAQLAEAQAALERL 251
                 66788999******************************999999986 PP

>> DUF1664  Protein of unknown function (DUF1664)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.4   0.4   1.7e-05     0.028      45     110 ..      23      88 ..      18      95 .. 0.90
   2 ?    5.4   3.3     0.011        18      49     118 ..      91     164 ..      82     170 .. 0.65
   3 ?    2.4   1.5      0.09   1.5e+02      39     102 ..     135     201 ..     132     221 .. 0.50
   4 ?    1.8   2.2      0.14   2.2e+02      54      92 ..     202     241 ..     166     257 .. 0.59

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 1.7e-05
     DUF1664  45 svskqleqvseslaatkrhLssridrvdkkldeqkeiskeikeevtevredlseigedvesvkeav 110
                  v  ++e   e+l+a++r L+++++++ + l ++++ ++e +++++ +r +l++++ + ++ ++a 
  KOO24727.1  23 WVYAEMEGRVEALRAARRALEADVANLRDDLAASAKSKSEAAKQLEVARAELETVRAQRSEAQRAL 88 
                 5778899999*********************************************99887777665 PP

  == domain 2  score: 5.4 bits;  conditional E-value: 0.011
     DUF1664  49 qleqvseslaatkrhLssridrvdkkldeqkeiskei....keevtevredlseigedvesvkeavegleskle 118
                  + +  ++laa++  L+ r++r +++  e +e+ +++    ++++t+++e+l++  e+ + + +a   le+kl+
  KOO24727.1  91 TVADKEAQLAAAQASLETRLARTQAQSSEAQEALQKMvgerEAQLTAAQEELRKSLEETSCLVAAQAALETKLA 164
                 55556688999999999999998877655544433332222556777777777777777777777778888876 PP

  == domain 3  score: 2.4 bits;  conditional E-value: 0.09
     DUF1664  39 lsdavesvskqleqvseslaatkrhLssridr.vdkkldeqkeiskeikee...vtevredlseiged 102
                 l+ a e++ k+le+ s  +a ++  L+ ++++  d++ ++q+++ ++++e+   ++++re+l+   e+
  KOO24727.1 135 LTAAQEELRKSLEETSCLVA-AQAALETKLAEsRDQSSKAQAALLEQVAEKevqLAAAREELRWNVEE 201
                 56677777788887765444.45556555543144555555555555554311133334444433344 PP

  == domain 4  score: 1.8 bits;  conditional E-value: 0.14
     DUF1664  54 seslaatkrhLssridrvdkkl.deqkeiskeikeevtev 92 
                 ++slaa++  L++r++  +++  ++q+++s++++e+ +++
  KOO24727.1 202 KASLAAAQAALEARVAATEAQSsQAQAALSRQVAEKEAQL 241
                 3566666666666666655443133344444444433332 PP

>> TMF_DNA_bd  TATA element modulatory factor 1 DNA binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   2.4   0.00039      0.64      22      73 ..      33      84 ..      27      85 .. 0.89
   2 ?   10.1   9.0   0.00038      0.62       3      68 ..      88     154 ..      86     160 .. 0.91
   3 ?    2.8   3.9     0.073   1.2e+02      23      66 ..     162     205 ..     160     213 .. 0.67
   4 ?    6.1   9.4    0.0069        11       3      71 ..     177     249 ..     175     251 .. 0.79
   5 ?    7.3   1.9    0.0028       4.6      25      60 ..     217     252 ..     214     261 .. 0.80

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.00039
  TMF_DNA_bd 22 ekLskkelklnntikkLrkknkelekeikelkkkleklekeleeleerlkea 73
                e+L++  ++l++ + +Lr +++ + k+ +e  k+le    ele+ ++  +ea
  KOO24727.1 33 EALRAARRALEADVANLRDDLAASAKSKSEAAKQLEVARAELETVRAQRSEA 84
                8899999999999************************999999988766665 PP

  == domain 2  score: 10.1 bits;  conditional E-value: 0.00038
  TMF_DNA_bd   3 lekklkeKDeqIaqLmeEGe.kLskkelklnntikkLrkknkelekeikelkkkleklekeleelee 68 
                 le +++ K++q+a+ ++ +e +L+ ++ + ++++  L+k + e e +++  +++l+k+ +e + l +
  KOO24727.1  88 LERTVADKEAQLAAAQASLEtRLARTQAQSSEAQEALQKMVGEREAQLTAAQEELRKSLEETSCLVA 154
                 78899*************9857**************************************9987765 PP

  == domain 3  score: 2.8 bits;  conditional E-value: 0.073
  TMF_DNA_bd  23 kLskkelklnntikkLrkknkelekeikelkkkleklekeleel 66 
                 kL+ + ++ ++++  L ++++e e +++   ++l+  ++e ++l
  KOO24727.1 162 KLAESRDQSSKAQAALLEQVAEKEVQLAAAREELRWNVEEKASL 205
                 67777777777777777777777777777777776666666665 PP

  == domain 4  score: 6.1 bits;  conditional E-value: 0.0069
  TMF_DNA_bd   3 lekklkeKDeqIaqLmeEGekLskkelklnntikkLrkknkelekeikelk....kkleklekeleeleerlk 71 
                 l+++++eK+ q+a+ +eE+     +   l +++  L + ++ +e + ++ +    ++++++e +l+e ++ l+
  KOO24727.1 177 LLEQVAEKEVQLAAAREELRWNVEEKASLAAAQAALEARVAATEAQSSQAQaalsRQVAEKEAQLAEAQAALE 249
                 7899***************999999999999999999999998855555542233888888888888777665 PP

  == domain 5  score: 7.3 bits;  conditional E-value: 0.0028
  TMF_DNA_bd  25 skkelklnntikkLrkknkelekeikelkkklekle 60 
                 +++e + ++++  L  +++e e +++e +  le+l+
  KOO24727.1 217 AATEAQSSQAQAALSRQVAEKEAQLAEAQAALERLV 252
                 578889999999999999999999999888888765 PP

>> Baculo_PEP_C  Baculovirus polyhedron envelope protein, PEP, C terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.7   0.1      0.15   2.5e+02      48      79 ..      36      67 ..      18      80 .. 0.43
   2 ?    8.8   6.7   0.00095       1.5      22      90 ..      74     149 ..      61     157 .. 0.74
   3 ?    1.8   6.1      0.14   2.2e+02      25      80 ..     113     167 ..     110     209 .. 0.73
   4 ?    8.4   2.7    0.0013       2.1      22      66 ..     216     260 ..     207     265 .. 0.85

  Alignments for each domain:
  == domain 1  score: 1.7 bits;  conditional E-value: 0.15
  Baculo_PEP_C 48 nalsedlksllaeldtrldtlltnLtdalnal 79
                   a   +l++ +a+l+++l+++++  ++a ++l
    KOO24727.1 36 RAARRALEADVANLRDDLAASAKSKSEAAKQL 67
                  22222233333333334444444444444444 PP

  == domain 2  score: 8.8 bits;  conditional E-value: 0.00095
  Baculo_PEP_C  22 LnairlqnvqilaqlatlldaietqLnalsedlksllaeldt.......rldtlltnLtdalnalqdtlrneLtnl 90 
                   L+++r+q ++   +l++++++ e qL a +++l+  la  ++       +l++++ + +++l a q++lr+ L+ +
    KOO24727.1  74 LETVRAQRSEAQRALERTVADKEAQLAAAQASLETRLARTQAqsseaqeALQKMVGEREAQLTAAQEELRKSLEET 149
                   899999***9999**************9999999999988884444444455555555555555557788777765 PP

  == domain 3  score: 1.8 bits;  conditional E-value: 0.14
  Baculo_PEP_C  25 irlqnvqilaqlatlldaietqLnalsedlksllaeldtrldtlltnLtdalnalq 80 
                    ++q+++   +l++++ + e qL+a +e+l+++l+e  + l ++ ++L+++l++  
    KOO24727.1 113 TQAQSSEAQEALQKMVGEREAQLTAAQEELRKSLEET-SCLVAAQAALETKLAESR 167
                   5677777778888888888888888888888866654.356666666666666544 PP

  == domain 4  score: 8.4 bits;  conditional E-value: 0.0013
  Baculo_PEP_C  22 LnairlqnvqilaqlatlldaietqLnalsedlksllaeldtrld 66 
                   ++a  +q++q  a+l++++++ e qL + +++l++l+a+ + +l+
    KOO24727.1 216 VAATEAQSSQAQAALSRQVAEKEAQLAEAQAALERLVAAKEVELT 260
                   677889999**************************9998776665 PP

>> YabA  Initiation control protein YabA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.8   0.6     0.013        22      26      75 ..      27      76 ..      17      91 .. 0.81
   2 ?    9.1   4.2    0.0012       1.9       5      53 ..      98     157 ..      93     177 .. 0.71
   3 ?    6.4   3.3    0.0084        14      12      61 ..     176     236 ..     167     254 .. 0.71

  Alignments for each domain:
  == domain 1  score: 5.8 bits;  conditional E-value: 0.013
                HHHHHHHHHHHHHHHHHHHHHHHHHHHXXXXXXXXXXXXXXXXXXXXXXX CS
        YabA 26 elkeelaelleenaeLeleneklrerleeeekkekekkkelsegkenLar 75
                e++ ++++l    ++Le++  +lr+ l+ + k+++e  k+l+ ++ +L+ 
  KOO24727.1 27 EMEGRVEALRAARRALEADVANLRDDLAASAKSKSEAAKQLEVARAELET 76
                56667777888888999999999999988888888888888888888875 PP

  == domain 2  score: 9.1 bits;  conditional E-value: 0.0012
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH.HHHHHHHHHHHHHHHHH..........X CS
        YabA   5 elfdkleeleeqleelleeleelkeelaell.eenaeLeleneklrerl..........e 53 
                 +l ++ ++le++l++++++ +e +e+l++++ e++a+L++ +e+lr+ l          +
  KOO24727.1  98 QLAAAQASLETRLARTQAQSSEAQEALQKMVgEREAQLTAAQEELRKSLeetsclvaaqA 157
                 566777899******************9998355789************66555554431 PP

  == domain 3  score: 6.4 bits;  conditional E-value: 0.0084
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH...........XXXXXXXXX CS
        YabA  12 eleeqleelleeleelkeelaelleenaeLeleneklrerl...........eeeekkeke 61 
                 +l eq++e   +l++ +eel   +ee a+L + +  l  r+           +  +++ +e
  KOO24727.1 176 ALLEQVAEKEVQLAAAREELRWNVEEKASLAAAQAALEARVaateaqssqaqAALSRQVAE 236
                 67789999999******************************65554444333222333333 PP

>> cwf21  cwf21 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.5   0.0      0.89   1.4e+03      29      39 ..      27      37 ..      26      38 .. 0.86
   2 ?   10.6   0.2   0.00031       0.5       6      41 ..      39      74 ..      36      76 .. 0.91
   3 ?   -2.0   5.3       2.5   4.1e+03      18      18 ..     168     168 ..      82     259 .. 0.73

  Alignments for each domain:
  == domain 1  score: -0.5 bits;  conditional E-value: 0.89
       cwf21 29 eIeervdelRe 39
                e e rv++lR+
  KOO24727.1 27 EMEGRVEALRA 37
                7899******6 PP

  == domain 2  score: 10.6 bits;  conditional E-value: 0.00031
       cwf21  6 rReIEvkvlelrdeLEeeglseeeIeervdelRekL 41
                rR+ E  v  lrd L  +  s+ e  ++++  R++L
  KOO24727.1 39 RRALEADVANLRDDLAASAKSKSEAAKQLEVARAEL 74
                9**************999779999999999999988 PP

  == domain 3  score: -2.0 bits;  conditional E-value: 2.5
       cwf21  18 d 18 
                 d
  KOO24727.1 168 D 168
                 1 PP

>> ATG16  Autophagy protein 16 (ATG16)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9  25.3   5.8e-05     0.095      74     185 ..      37     153 ..      26     153 .. 0.82
   2 ?    1.8  19.1      0.14   2.4e+02      72     155 ..      99     180 ..      90     183 .. 0.65
   3 ?   -3.0  29.4       4.5   7.3e+03      30     148 ..     131     261 ..     130     266 .. 0.49

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 5.8e-05
       ATG16  74 akiqsleqklaqlreelaelyksrgelaqrllelneelqkleeklkedeerlaeleae.raaletklkdreeelrekeklvqdlqDElsaL....qlql 167
                 a   +le+ +a lr++la++ ks++e a++l  + +el++ +++ +e +++l++  a+  a+l  + +++e +l+  ++   + q++l+ +    + ql
  KOO24727.1  37 AARRALEADVANLRDDLAASAKSKSEAAKQLEVARAELETVRAQRSEAQRALERTVADkEAQLAAAQASLETRLARTQAQSSEAQEALQKMvgerEAQL 135
                 566799*****************************************9999987665415678888888888888888888888887776544447899 PP

       ATG16 168 nqaEeklrklekENkeLv 185
                 + a e+lrk  +E + Lv
  KOO24727.1 136 TAAQEELRKSLEETSCLV 153
                 999999999888887776 PP

  == domain 2  score: 1.8 bits;  conditional E-value: 0.14
       ATG16  72 qsakiqsleqklaqlreelaelyksrgelaqrllelneelqkleeklkedeerlaeleaeraaletklkd.reeelrekeklvqd 155
                  +a  +sle++la+++++ +e+   ++ l++++ e +++l + +e+l++  e+   l a  aaletkl++ r++  + +++l+++
  KOO24727.1  99 LAAAQASLETRLARTQAQSSEA---QEALQKMVGEREAQLTAAQEELRKSLEETSCLVAAQAALETKLAEsRDQSSKAQAALLEQ 180
                 3445556666666666666665...567888888888888888888888888888888888888888765155555666666655 PP

  == domain 3  score: -3.0 bits;  conditional E-value: 4.5
       ATG16  30 rtsaleaenaklekaaasaks....sksskksakekeasasq.......snskqsakiqsleqklaqlreelaelyksrgelaqrllelneelqklee. 116
                 r ++l a +++l+k+ ++++     +++ +++  e+++++s+       + ++++ ++++  ++l    ee a l  +++ l+ r+ +++++ ++ ++ 
  KOO24727.1 131 REAQLTAAQEELRKSLEETSClvaaQAALETKLAESRDQSSKaqaalleQVAEKEVQLAAAREELRWNVEEKASLAAAQAALEARVAATEAQSSQAQAa 229
                 445555555555555444444533311211111111112222112223334445556666666666666666777777777777777777776666652 PP

       ATG16 117 klkedeerlaeleaeraaletklkdreeelre 148
                  +++ +e+ a+l +  aale+ ++ +e el e
  KOO24727.1 230 LSRQVAEKEAQLAEAQAALERLVAAKEVELTE 261
                 34455555666666666666666666666655 PP

>> T3SS_needle_F  Type III secretion needle MxiH, YscF, SsaG, EprI, PscF, EscF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.0       1.2   1.9e+03      21      32 ..      37      48 ..      29      69 .. 0.58
   2 ?    3.1   1.0     0.066   1.1e+02      16      47 ..      78     110 ..      68     120 .. 0.61
   3 ?   10.1   0.6   0.00043       0.7       5      43 ..     121     159 ..     117     161 .. 0.93
   4 ?    7.2   2.2    0.0035       5.6       5      55 ..     174     224 ..     171     228 .. 0.91
   5 ?    2.3   1.0      0.12     2e+02       5      27 ..     227     249 ..     224     256 .. 0.77

  Alignments for each domain:
  == domain 1  score: -0.9 bits;  conditional E-value: 1.2
                   HHHHHHHHSTTX CS
  T3SS_needle_F 21 dalealkadpsd 32
                   +a +al+ad+ +
     KOO24727.1 37 AARRALEADVAN 48
                   344444433332 PP

  == domain 2  score: 3.1 bits;  conditional E-value: 0.066
                    HHHHHHHHHHHHHST.TXHHHHHHHHHHHHCHH CS
  T3SS_needle_F  16 ekelqdalealkadp.sdPaaLakvQfklqqYs 47 
                    + + ++a++al+  + +  a+La +Q++l    
     KOO24727.1  78 RAQRSEAQRALERTVaDKEAQLAAAQASLETRL 110
                    444445555555544266778888888887555 PP

  == domain 3  score: 10.1 bits;  conditional E-value: 0.00043
                    HHHHHCCTHHHHHHHHHHHHHHHHSTTXHHHHHHHHHHH CS
  T3SS_needle_F   5 asalsqkvskaekelqdalealkadpsdPaaLakvQfkl 43 
                    ++al+++v + e +l++a+e l + ++ ++ L+ +Q++l
     KOO24727.1 121 QEALQKMVGEREAQLTAAQEELRKSLEETSCLVAAQAAL 159
                    689*********************************998 PP

  == domain 4  score: 7.2 bits;  conditional E-value: 0.0035
                    HHHHHCCTHHHHHHHHHHHHHHHHSTTXHHHHHHHHHHHHCHHHHHCHHHH CS
  T3SS_needle_F   5 asalsqkvskaekelqdalealkadpsdPaaLakvQfklqqYsvfinaqSt 55 
                    + al ++v + e +l +a e l  +++  a+La +Q++l    + + aqS+
     KOO24727.1 174 QAALLEQVAEKEVQLAAAREELRWNVEEKASLAAAQAALEARVAATEAQSS 224
                    5678899999************99****************99999999997 PP

  == domain 5  score: 2.3 bits;  conditional E-value: 0.12
                    HHHHHCCTHHHHHHHHHHHHHHH CS
  T3SS_needle_F   5 asalsqkvskaekelqdalealk 27 
                    + als++v + e +l +a++al+
     KOO24727.1 227 QAALSRQVAEKEAQLAEAQAALE 249
                    56788888888888888888884 PP

>> XLF  XLF-Cernunnos, XRcc4-like factor, NHEJ component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.7   2.8     0.076   1.2e+02      73     156 ..      50     148 ..      32     152 .. 0.62
   2 ?    9.2   5.8    0.0008       1.3      45     162 ..     142     260 ..     130     263 .. 0.75

  Alignments for each domain:
  == domain 1  score: 2.7 bits;  conditional E-value: 0.076
         XLF  73 rkaldgskkssaefslnlss........kaeed....sLtlkl...tieLpgplspleWefslvkepsssltkeLvlpllqasaelkrqveeLieilke 156
                 r+ l +s ks+ e++++l+         +a+++     L+ ++   +++L++  + le ++ +++++ss+ +++L   + + +a+l+  +eeL++ l+e
  KOO24727.1  50 RDDLAASAKSKSEAAKQLEVaraeletvRAQRSeaqrALERTVadkEAQLAAAQASLETRLARTQAQSSEAQEALQKMVGEREAQLTAAQEELRKSLEE 148
                 333333333333332222222233333422222333345544455567888888889999999999999999999999888999999999999888876 PP

  == domain 2  score: 9.2 bits;  conditional E-value: 0.0008
         XLF  45 ilkrakeentsidpsedeeqlavlleklrkaldgskkssaef.slnlss....kaeedsLtlkl..tieLpgplspleWefslvkepsssltkeLvlpl 136
                 + k  +e+++ +      +  a+l  kl++++d+s k++a   ++  ++     a +++L+ ++  ++ L++  + le ++  + ++ss+ + +L +++
  KOO24727.1 142 LRKSLEETSCLV------AAQAALETKLAESRDQSSKAQAALlEQVAEKevqlAAAREELRWNVeeKASLAAAQAALEARVAATEAQSSQAQAALSRQV 234
                 333334444444......455666677888887777776666633333334445555688888888999****************************** PP

         XLF 137 lqasaelkrqveeLieilkeKDavIs 162
                  + +a+l++ ++ L +++ +K  +++
  KOO24727.1 235 AEKEAQLAEAQAALERLVAAKEVELT 260
                 *********************98885 PP

>> CHMI  5-carboxymethyl-2-hydroxymuconate isomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   2.0   0.00054      0.89      36     104 ..      77     146 ..      43     158 .. 0.82
   2 ?   -1.0   0.1       1.3   2.1e+03      64      97 ..     160     192 ..     154     221 .. 0.65
   3 ?    0.1   0.2       0.6   9.7e+02      78     114 ..     206     242 ..     196     252 .. 0.70

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.00054
                 GGG-EEEEEEESSEEETTSS-T-EEEEEEEEEES---HHHHHHHHHHHHHHHHHHHHHHHT.TS-EEEEE CS
        CHMI  36 lgGiRvrairlddyavADgkeddaFvhltlkigaGRseevkkeagealfaalkahlaelfa.krylalsl 104
                 + + R+ a r+ +  vAD++++ a  +++l     R++++ +ea eal +++ +  a+l+a +++l  sl
  KOO24727.1  77 VRAQRSEAQRALERTVADKEAQLAAAQASLETRLARTQAQSSEAQEALQKMVGEREAQLTAaQEELRKSL 146
                 566799999*****************************************99887777665145555555 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 1.3
                 EEEEES---HHHHHHHHHHHHHHHHHHHHHHHTT CS
        CHMI  64 tlkigaGRseevkkeagealfaalkahlaelfak 97 
                 + k+++ R+++ k++a+  l +++++ ++   a+
  KOO24727.1 160 ETKLAESRDQSSKAQAA-LLEQVAEKEVQLAAAR 192
                 55667777766665543.3444445544444444 PP

  == domain 3  score: 0.1 bits;  conditional E-value: 0.6
                 HHHHHHHHHHHHHHHHHHTTS-EEEEEEEEEE-GGGE CS
        CHMI  78 eagealfaalkahlaelfakrylalsleieeideels 114
                 +a++a ++a  a+ +++ ++ + als ++ e +++l 
  KOO24727.1 206 AAAQAALEARVAATEAQSSQAQAALSRQVAEKEAQLA 242
                 4555566666667777888888899999888887765 PP

>> Glucosaminidase  Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.5   0.2     0.061     1e+02      14      31 ..      96     113 ..      81     126 .. 0.75
   2 ?    4.9   0.1     0.023        37      17      34 ..     152     169 ..     136     177 .. 0.78
   3 ?    4.1   0.6     0.042        68      14      29 ..     202     217 ..     188     231 .. 0.69
   4 ?   -2.2   0.1       3.7     6e+03      15      25 ..     239     249 ..     224     249 .. 0.76

  Alignments for each domain:
  == domain 1  score: 3.5 bits;  conditional E-value: 0.061
                      -HHHHHHHHHHHHTTTTC CS
  Glucosaminidase  14 ppsvalaqaalEsgwgts 31 
                       +++a+aqa lE+   ++
       KOO24727.1  96 EAQLAAAQASLETRLART 113
                      4689*********97733 PP

  == domain 2  score: 4.9 bits;  conditional E-value: 0.023
                      HHHHHHHHHHTTTTCHHH CS
  Glucosaminidase  17 valaqaalEsgwgtsrla 34 
                      +++aqaalE+   +sr +
       KOO24727.1 152 LVAAQAALETKLAESRDQ 169
                      689*******99877644 PP

  == domain 3  score: 4.1 bits;  conditional E-value: 0.042
                      -HHHHHHHHHHHHTTT CS
  Glucosaminidase  14 ppsvalaqaalEsgwg 29 
                       +s+a+aqaalE    
       KOO24727.1 202 KASLAAAQAALEARVA 217
                      469*********8755 PP

  == domain 4  score: -2.2 bits;  conditional E-value: 3.7
                      HHHHHHHHHHH CS
  Glucosaminidase  15 psvalaqaalE 25 
                      +++a aqaalE
       KOO24727.1 239 AQLAEAQAALE 249
                      57888999998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (268 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      3281  (0.183); expected 358.6 (0.02)
Passed bias filter:                      651  (0.0363099); expected 358.6 (0.02)
Passed Vit filter:                       140  (0.00780858); expected 17.9 (0.001)
Passed Fwd filter:                        72  (0.00401584); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 1.28u 0.35s 00:00:01.63 Elapsed: 00:00:00.53
# Mc/sec: 1534.12
//
Query:       KOO24728.1  [L=1879]
Description: calmodulin 2-like protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.6e-22   77.4   0.1    0.00017   21.3   0.0    4.7  4  EF-hand_6     EF-hand domain
    1.7e-18   64.7   1.0    0.00044   19.6   0.0    4.6  4  EF-hand_1     EF hand
    6.2e-17   61.8   5.0    4.9e-07   30.1   0.1    4.6  5  EF-hand_7     EF-hand domain pair
    1.8e-08   33.5   7.3     0.0035   16.8   0.1    4.3  4  EF-hand_5     EF hand
    6.6e-08   32.3   1.6       0.32   10.9   0.0    3.9  3  EF-hand_8     EF-hand domain pair
      0.004   16.8   0.0         36    4.2   0.0    4.8  4  NCE101        Non-classical export protein 1


Domain annotation for each model (and alignments):
>> EF-hand_6  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.3   0.0   5.7e-08   0.00017       4      31 .]    1359    1385 ..    1356    1385 .. 0.90
   2 !   12.9   0.0   2.8e-05     0.082       3      27 ..    1394    1418 ..    1392    1421 .. 0.93
   3 !   19.5   0.0     2e-07   0.00061       2      31 .]    1453    1481 ..    1452    1481 .. 0.90
   4 !   17.8   0.0   7.5e-07    0.0022       2      27 ..    1489    1514 ..    1488    1518 .. 0.94

  Alignments for each domain:
  == domain 1  score: 21.3 bits;  conditional E-value: 5.7e-08
   EF-hand_6    4 eaFklfDkdgdGkidaeElrkalrkalg 31  
                  ++F+ +DkdgdG+++++E+rka+  alg
  KOO24728.1 1359 DLFRSWDKDGDGEVSKAEFRKAIP-ALG 1385
                  79********************97.665 PP

  == domain 2  score: 12.9 bits;  conditional E-value: 2.8e-05
   EF-hand_6    3 reaFklfDkdgdGkidaeElrkalr 27  
                  +e+F+++D dg G++ ++El+k+l+
  KOO24728.1 1394 DELFDMWDADGGGSLAPKELKKLLS 1418
                  79********************997 PP

  == domain 3  score: 19.5 bits;  conditional E-value: 2e-07
   EF-hand_6    2 lreaFklfDkdgdGkidaeElrkalrkalg 31  
                  ++++F+ +D+dgdG+++++E+ +a+  alg
  KOO24728.1 1453 VMDLFRSWDRDGDGEVSKAEFENAFP-ALG 1481
                  679********************997.665 PP

  == domain 4  score: 17.8 bits;  conditional E-value: 7.5e-07
   EF-hand_6    2 lreaFklfDkdgdGkidaeElrkalr 27  
                  ++e+F+l+D dg Gk++++El+k+l+
  KOO24728.1 1489 VYELFNLWDSDGGGKLNYKELKKILS 1514
                  689*********************97 PP

>> EF-hand_1  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.6   0.0   1.5e-07   0.00044       4      26 ..    1359    1381 ..    1356    1384 .. 0.89
   2 !    8.0   0.0   0.00075       2.2       2      27 ..    1393    1418 ..    1392    1420 .. 0.93
   3 !   17.4   0.0   7.3e-07    0.0022       2      26 ..    1453    1477 ..    1452    1480 .. 0.89
   4 !   15.0   0.0   4.2e-06     0.013       2      27 ..    1489    1514 ..    1488    1515 .. 0.92

  Alignments for each domain:
  == domain 1  score: 19.6 bits;  conditional E-value: 1.5e-07
                  HHHHHHTTTSSSEEEHHHHHHHH CS
   EF-hand_1    4 eiFrefDkDgdGkIdfeEfkell 26  
                  ++Fr  DkDgdG +++ Ef++++
  KOO24728.1 1359 DLFRSWDKDGDGEVSKAEFRKAI 1381
                  78******************987 PP

  == domain 2  score: 8.0 bits;  conditional E-value: 0.00075
                  HHHHHHHHTTTSSSEEEHHHHHHHHH CS
   EF-hand_1    2 lkeiFrefDkDgdGkIdfeEfkellk 27  
                  ++e+F++ D Dg G +  +E+k+ll+
  KOO24728.1 1393 VDELFDMWDADGGGSLAPKELKKLLS 1418
                  79********************9986 PP

  == domain 3  score: 17.4 bits;  conditional E-value: 7.3e-07
                  HHHHHHHHTTTSSSEEEHHHHHHHH CS
   EF-hand_1    2 lkeiFrefDkDgdGkIdfeEfkell 26  
                  + ++Fr  D+DgdG +++ Ef +++
  KOO24728.1 1453 VMDLFRSWDRDGDGEVSKAEFENAF 1477
                  5789*****************9987 PP

  == domain 4  score: 15.0 bits;  conditional E-value: 4.2e-06
                  HHHHHHHHTTTSSSEEEHHHHHHHHH CS
   EF-hand_1    2 lkeiFrefDkDgdGkIdfeEfkellk 27  
                  + e+F++ D Dg Gk++++E+k++l+
  KOO24728.1 1489 VYELFNLWDSDGGGKLNYKELKKILS 1514
                  6799*******************985 PP

>> EF-hand_7  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.1       4.4   1.3e+04      30      53 ..     342     365 ..     327     367 .. 0.70
   2 !   15.3   0.0   6.9e-06     0.021      45      69 ..    1356    1380 ..    1340    1382 .. 0.86
   3 !   20.9   0.1   1.3e-07   0.00037       4      68 ..    1357    1415 ..    1354    1418 .. 0.88
   4 !   24.3   0.1   1.1e-08   3.3e-05       6      70 ..    1395    1477 ..    1390    1478 .. 0.82
   5 !   30.1   0.1   1.6e-10   4.9e-07       3      69 ..    1452    1512 ..    1450    1514 .. 0.89

  Alignments for each domain:
  == domain 1  score: -3.3 bits;  conditional E-value: 4.4
   EF-hand_7  30 kifqgagegsklsdeelellfkef 53 
                 +++++ ++++k  ++ +++l++++
  KOO24728.1 342 QLIEQREREEKEKEKRVQHLSEMI 365
                 444444677776777799999886 PP

  == domain 2  score: 15.3 bits;  conditional E-value: 6.9e-06
   EF-hand_7   45 elellfkefDtdkdGvisfdEFlkl 69  
                   + +lf+ +D+d+dG++s  EF+k+
  KOO24728.1 1356 RVTDLFRSWDKDGDGEVSKAEFRKA 1380
                  3889******************997 PP

  == domain 3  score: 20.9 bits;  conditional E-value: 1.3e-07
   EF-hand_7    4 lkeaFkelDtdgdgyldkeellrllrkifqgagegsklsdeelellfkefDtdkdGvisfdEFlk 68  
                  + + F++ D+dgdg ++k+e+++++         g ++++  +++lf+++D d+ G++   E++k
  KOO24728.1 1357 VTDLFRSWDKDGDGEVSKAEFRKAIP------ALGIVVDECYVDELFDMWDADGGGSLAPKELKK 1415
                  5678******************9999......9999999999*************9987666665 PP

  == domain 4  score: 24.3 bits;  conditional E-value: 1.1e-08
   EF-hand_7    6 eaFkelDtdgdgyldkeellrllrkifqga....................gegsklsdee..lellfkefDtdkdGvisfdEFlkly 70  
                  e F++ D dg g+l + el++ll     g+                      +++l +++  + +lf+ +D d+dG++s  EF++++
  KOO24728.1 1395 ELFDMWDADGGGSLAPKELKKLLS----GKpppekkklrkldpadgpmsdQLADVLKSQStrVMDLFRSWDRDGDGEVSKAEFENAF 1477
                  68*******************887....345777877777777778888855555555555599*******************9875 PP

  == domain 5  score: 30.1 bits;  conditional E-value: 1.6e-10
   EF-hand_7    3 klkeaFkelDtdgdgyldkeellrllrkifqgagegsklsdeelellfkefDtdkdGvisfdEFlkl 69  
                  ++++ F++ D+dgdg ++k+e+++++         g ++++  + +lf+ +D+d+ G++++ E++k+
  KOO24728.1 1452 RVMDLFRSWDRDGDGEVSKAEFENAFP------ALGIDVPKLDVYELFNLWDSDGGGKLNYKELKKI 1512
                  6899********************999......6666666667********************9987 PP

>> EF-hand_5  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   0.1   1.2e-06    0.0035       3      23 ..    1359    1379 ..    1357    1381 .. 0.91
   2 ?   -0.4   0.0      0.31   9.1e+02       2      24 ..    1394    1416 ..    1393    1417 .. 0.85
   3 !   15.0   0.3   4.2e-06     0.013       3      23 ..    1455    1475 ..    1453    1477 .. 0.90
   4 ?    2.4   0.0      0.04   1.2e+02       4      24 ..    1492    1512 ..    1489    1513 .. 0.87

  Alignments for each domain:
  == domain 1  score: 16.8 bits;  conditional E-value: 1.2e-06
                  HHHHHH-SS-SSCE-HHHHHH CS
   EF-hand_5    3 dtFqaiDlNgDGkIskeELkt 23  
                  d+F+  D++gDG +sk E+++
  KOO24728.1 1359 DLFRSWDKDGDGEVSKAEFRK 1379
                  689999*************96 PP

  == domain 2  score: -0.4 bits;  conditional E-value: 0.31
                  HHHHHHH-SS-SSCE-HHHHHHH CS
   EF-hand_5    2 kdtFqaiDlNgDGkIskeELktl 24  
                  +++F++ D++g G + + ELk+l
  KOO24728.1 1394 DELFDMWDADGGGSLAPKELKKL 1416
                  4589999****999999999997 PP

  == domain 3  score: 15.0 bits;  conditional E-value: 4.2e-06
                  HHHHHH-SS-SSCE-HHHHHH CS
   EF-hand_5    3 dtFqaiDlNgDGkIskeELkt 23  
                  d+F+  D +gDG +sk E+++
  KOO24728.1 1455 DLFRSWDRDGDGEVSKAEFEN 1475
                  789999*************86 PP

  == domain 4  score: 2.4 bits;  conditional E-value: 0.04
                  HHHHH-SS-SSCE-HHHHHHH CS
   EF-hand_5    4 tFqaiDlNgDGkIskeELktl 24  
                  +F+  D +g Gk++  ELk++
  KOO24728.1 1492 LFNLWDSDGGGKLNYKELKKI 1512
                  68888*************986 PP

>> EF-hand_8  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.9   0.0   0.00011      0.32       2      43 ..    1369    1408 ..    1355    1417 .. 0.78
   2 !    8.3   0.1   0.00067         2      30      48 ..    1455    1473 ..    1450    1478 .. 0.90
   3 !    9.6   0.0   0.00027      0.81      18      49 ..    1481    1510 ..    1474    1513 .. 0.86

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00011
   EF-hand_8    2 kgkItreelrrilrilglkkglseeevdilfrefDtdgdGki 43  
                  +g+++++e+r+++ +lg+   + e  vd+lf+  D dg G +
  KOO24728.1 1369 DGEVSKAEFRKAIPALGIV--VDECYVDELFDMWDADGGGSL 1408
                  7888888889888555888..888888888888888888877 PP

  == domain 2  score: 8.3 bits;  conditional E-value: 0.00067
   EF-hand_8   30 ilfrefDtdgdGkisfeEF 48  
                  +lfr  D+dgdG +s+ EF
  KOO24728.1 1455 DLFRSWDRDGDGEVSKAEF 1473
                  69999************** PP

  == domain 3  score: 9.6 bits;  conditional E-value: 0.00027
   EF-hand_8   18 glkkglseeevdilfrefDtdgdGkisfeEFc 49  
                  g+   + + +v +lf++ D dg Gk++++E  
  KOO24728.1 1481 GID--VPKLDVYELFNLWDSDGGGKLNYKELK 1510
                  555..78999*******************975 PP

>> NCE101  Non-classical export protein 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.8   0.0     0.032        96       9      31 ..     261     283 ..     257     288 .. 0.87
   2 ?   -2.5   0.1       1.4   4.3e+03      24      42 ..     345     368 ..     335     369 .. 0.46
   3 ?    4.2   0.0     0.012        36       9      31 ..     405     427 ..     401     433 .. 0.87
   4 ?    2.8   0.0     0.032        97       9      31 ..     546     568 ..     541     573 .. 0.83

  Alignments for each domain:
  == domain 1  score: 2.8 bits;  conditional E-value: 0.032
      NCE101   9 PlLaifiGvaaYylyEkrterpe 31 
                 P La f+G++a y  E r+++ e
  KOO24728.1 261 PALANFFGMWASYSIEARHNKSE 283
                 999***************98765 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 1.4
      NCE101  24 Ek..rterpegh...rLneLlkkk 42 
                 E+  r+e+++++   +L+e++ ++
  KOO24728.1 345 EQreREEKEKEKrvqHLSEMIARR 368
                 553333444444012666666665 PP

  == domain 3  score: 4.2 bits;  conditional E-value: 0.012
      NCE101   9 PlLaifiGvaaYylyEkrterpe 31 
                 P La f+G++a y  E r+++ e
  KOO24728.1 405 PALANFFGTWASYSIEARHNKSE 427
                 999***************98765 PP

  == domain 4  score: 2.8 bits;  conditional E-value: 0.032
      NCE101   9 PlLaifiGvaaYylyEkrterpe 31 
                 P La f+G++a y  E r+++ e
  KOO24728.1 546 PELANFFGTWASYSIEARHNKSE 568
                 77999*************98765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1879 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2408  (0.134308); expected 358.6 (0.02)
Passed bias filter:                      453  (0.0252663); expected 358.6 (0.02)
Passed Vit filter:                        83  (0.00462937); expected 17.9 (0.001)
Passed Fwd filter:                        39  (0.00217525); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 1.81u 0.38s 00:00:02.19 Elapsed: 00:00:00.54
# Mc/sec: 10505.37
//
Query:       KOO24729.1  [L=382]
Description: glucose-6-phosphate phosphate and phosphoenolpyruvate phosphate antiporter [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      4e-09   36.2  14.2    1.6e-08   34.3  14.2    1.8  1  TPT       Triose-phosphate Transporter family
  ------ inclusion threshold ------
        2.1    8.5  25.2        4.2    7.5  10.8    2.5  2  EamA      EamA-like transporter family


Domain annotation for each model (and alignments):
>> TPT  Triose-phosphate Transporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.3  14.2   1.8e-12   1.6e-08      18     289 ..      64     376 ..      47     377 .. 0.80

  Alignments for each domain:
  == domain 1  score: 34.3 bits;  conditional E-value: 1.8e-12
         TPT  18 nilnKkilnvf..pyPltvsavqllvgsvlilvlwal..glkk......................................rpkisse.flkailplal 73 
                  ++n  iln +  p+Pl++sa+  +v+s +++ + +l  ++++                                      +   + +  l++++p++ 
  KOO24729.1  64 VLVNARILNELhfPFPLFLSALGQVVTSFYCAGVIHLqpRVERlwrrwtkprattapklgiepvpittpkasgggeaaeggIGSTTFQfWLWNMIPIGA 162
                 56677777765456777777777777776665444442344447777777777777777777777777777777777766655555555789******* PP

         TPT  74 vktlghvlavvslskvaVSfthtvKasePiFtvilsrlllgeklsllvylsLlpivgGvalasvtElsFnligfisAlisnltfslrnifsKkllkklk 172
                 ++ l+  +++ +    ++  t+++ +  P  t +l  +   e +++   +++  i  G+a+as  E +  lig+    +  +++++r ++  +llk+ k
  KOO24729.1 163 AQGLTFAMTNAAYMYLTITLTQMLASFTPTVTLVLLYVTGVEIPTTRATVCVCLIGLGCAIASYGEGQLSLIGMAFRSVGIVAEATRLVLLQRLLKNFK 261
                 **************************************999********************************************************87 PP

         TPT 173 dldalnlfaiitilslllllPvallvegvlktpsllkstkvs.lkevllllllsgvlfhlynqvaymvLervspvthsvantvKrvvvIvlsvlvfknp 270
                  l  l+ + + +  ++++ll  al++e     p+  +++ ++ + +  +l  +s++l  + +++++ v++ ++ vt  v nt + +  +  +v+++++p
  KOO24729.1 262 -LGVLESQYFFAPTAAAFLLVGALFTEA----PQFREKGGFAtMAAHPILFTASSLLGVVASMLTFIVIKLTNSVTLKVINTGRNAAFVLYTVVIMGEP 355
                 .555555555555555555556788888....777777764436677778888999999**************************************** PP

         TPT 271 vsllnaiGtavai..vGvflY 289
                  ++++++G ++++  + ++lY
  KOO24729.1 356 ATTIQIFGYSISLafFSIYLY 376
                 ********9886511556665 PP

>> EamA  EamA-like transporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.5   6.4   0.00099       8.8      64     136 ..     153     225 ..     143     226 .. 0.87
   2 ?    7.5  10.8   0.00047       4.2      41     130 ..     275     369 ..     234     377 .. 0.77

  Alignments for each domain:
  == domain 1  score: 6.5 bits;  conditional E-value: 0.00099
        EamA  64 wllllllgllgtvlafllffyalkktsasnaslitslePvftlilsvlllgekltlkqllgivlillGvllil 136
                 wl+ ++    +  l+f + + a  +++ +   ++ s++P +tl+l ++   e +t +  + ++li lG+++ +
  KOO24729.1 153 WLWNMIPIGAAQGLTFAMTNAAYMYLTITLTQMLASFTPTVTLVLLYVTGVEIPTTRATVCVCLIGLGCAIAS 225
                 666644444566788899999************************************************9876 PP

  == domain 2  score: 7.5 bits;  conditional E-value: 0.00047
        EamA  41 agillliiallkegkl.....aklslkdwllllllgllgtvlafllffyalkktsasnaslitslePvftlilsvlllgekltlkqllgivlill 130
                 a+++ll+ al++e ++        +  +  +l+  + l +v+a +l f+ +k t++ +  +i++   +  +++ v++ ge+ t +q++g  ++l+
  KOO24729.1 275 AAAFLLVGALFTEAPQfrekgGFATMAAHPILFTASSLLGVVASMLTFIVIKLTNSVTLKVINTGRNAAFVLYTVVIMGEPATTIQIFGYSISLA 369
                 33444444444444443333334777778899999999**************************************************9777664 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (382 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       701  (0.0390987); expected 358.6 (0.02)
Passed bias filter:                      311  (0.0173462); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.48u 0.23s 00:00:00.71 Elapsed: 00:00:00.40
# Mc/sec: 2897.52
//
Query:       KOO24730.1  [L=1562]
Description: wd repeat-containing protein 96 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.5e-06   28.8   3.4       0.13   13.2   0.0    4.9  6  WD40          WD domain, G-beta repeat
    7.6e-05   21.8   0.3          1    8.2   0.1    3.8  4  Ge1_WD40      WD40 region of Ge1, enhancer of mRNA-decapping 
     0.0023   18.2   0.0        1.3    9.3   0.0    4.6  5  ANAPC4_WD40   Anaphase-promoting complex subunit 4 WD40 domai
  ------ inclusion threshold ------
        0.1   13.1   9.2         33    5.2   0.1    5.3  5  PQQ_3         PQQ-like domain


Domain annotation for each model (and alignments):
>> WD40  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.0       1.4   6.4e+03      19      34 ..     248     263 ..     229     264 .. 0.76
   2 ?    0.6   0.1      0.28   1.2e+03      24      35 ..     354     371 ..     334     374 .. 0.60
   3 ?   -3.4   0.0         4   1.8e+04      28      37 ..     407     416 ..     397     417 .. 0.74
   4 !   11.0   0.0   0.00015      0.65      12      32 ..     438     458 ..     428     464 .. 0.83
   5 !   13.2   0.0   2.8e-05      0.13       2      32 ..     578     609 ..     577     613 .. 0.89
   6 ?   -3.6   0.1         4   1.8e+04      20      32 ..     650     662 ..     648     663 .. 0.81

  Alignments for each domain:
  == domain 1  score: -1.7 bits;  conditional E-value: 1.4
                 ETTSSEEEEEETTSEE CS
        WD40  19 spdgawlasGsdDgtv 34 
                   dg+ ++ G+ Dg+v
  KOO24730.1 248 VTDGTHMTVGCADGSV 263
                 568888888999**98 PP

  == domain 2  score: 0.6 bits;  conditional E-value: 0.28
                 E......EEEEETTSEEE CS
        WD40  24 w......lasGsdDgtvr 35 
                        ++++s+Dgt r
  KOO24730.1 354 GggkghdIITCSEDGTMR 371
                 233444456899999987 PP

  == domain 3  score: -3.4 bits;  conditional E-value: 4
                 EETTSEEEEE CS
        WD40  28 GsdDgtvriW 37 
                 Gs Dg ++++
  KOO24730.1 407 GSADGVLHLY 416
                 899**99987 PP

  == domain 4  score: 11.0 bits;  conditional E-value: 0.00015
                 SEEEEEEETTSSEEEEEETTS CS
        WD40  12 svtslafspdgawlasGsdDg 32 
                  vt lafs dga+la+++ Dg
  KOO24730.1 438 AVTRLAFSADGAYLAASCADG 458
                 49************9887798 PP

  == domain 5  score: 13.2 bits;  conditional E-value: 2.8e-05
                 EEEEEEESS.SSEEEEEEETTSSEEEEEETTS CS
        WD40   2 qclrtltGH.ssvtslafspdgawlasGsdDg 32 
                 q+l +++ H +  t+la spdg+++a++ +Dg
  KOO24730.1 578 QPLSSYSSHeKMPTALALSPDGNFVATAAKDG 609
                 7899*****5547***************9998 PP

  == domain 6  score: -3.6 bits;  conditional E-value: 4
                 TTSSEEEEEETTS CS
        WD40  20 pdgawlasGsdDg 32 
                 p +a++ s++ Dg
  KOO24730.1 650 PGSALVYSCGADG 662
                 6778899999898 PP

>> Ge1_WD40  WD40 region of Ge1, enhancer of mRNA-decapping protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    3.4   0.0     0.007        31     194     216 ..     246     268 ..     239     277 .. 0.85
   2 ?   -1.8   0.0      0.26   1.1e+03     196     219 ..     398     421 ..     393     431 .. 0.83
   3 !    8.2   0.1   0.00023         1     189     216 ..     438     465 ..     432     477 .. 0.84
   4 !    4.8   0.0    0.0025        11     191     210 ..     591     610 ..     551     628 .. 0.83

  Alignments for each domain:
  == domain 1  score: 3.4 bits;  conditional E-value: 0.007
    Ge1_WD40 194 afspdGtalatasedGevkffqv 216
                 a+ +dGt + + ++dG v +f +
  KOO24730.1 246 ALVTDGTHMTVGCADGSVSWFLL 268
                 6789**************99965 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 0.26
    Ge1_WD40 196 spdGtalatasedGevkffqvyle 219
                 s+   ++a  s+dG+++++q +le
  KOO24730.1 398 SAASLVIALGSADGVLHLYQRHLE 421
                 6677799*************8876 PP

  == domain 3  score: 8.2 bits;  conditional E-value: 0.00023
    Ge1_WD40 189 liveaafspdGtalatasedGevkffqv 216
                  ++  afs+dG+ la++++dG+   f +
  KOO24730.1 438 AVTRLAFSADGAYLAASCADGLTVVFEL 465
                 688899***************9887776 PP

  == domain 4  score: 4.8 bits;  conditional E-value: 0.0025
    Ge1_WD40 191 veaafspdGtalatasedGe 210
                 +  a+spdG  +ata++dG+
  KOO24730.1 591 TALALSPDGNFVATAAKDGF 610
                 4458***************7 PP

>> ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.1   0.0      0.26   1.2e+03      48      64 ..     249     265 ..     239     275 .. 0.81
   2 ?   -1.3   0.0      0.64   2.9e+03      38      70 ..     284     316 ..     275     332 .. 0.73
   3 !    9.3   0.0    0.0003       1.3      33      67 ..     431     465 ..     401     492 .. 0.58
   4 ?    1.2   0.0       0.1   4.6e+02      40      61 ..     589     610 ..     564     621 .. 0.81
   5 ?   -3.2   0.0       2.4   1.1e+04      18      54 ..     704     740 ..     699     749 .. 0.78

  Alignments for each domain:
  == domain 1  score: -0.1 bits;  conditional E-value: 0.26
  ANAPC4_WD40  48 pdgklLavaysdgevrl 64 
                   dg+ + v+++dg+v+ 
   KOO24730.1 249 TDGTHMTVGCADGSVSW 265
                  699**********9975 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 0.64
  ANAPC4_WD40  38 dsevrsLaWkpdgklLavaysdgevrlldaesg 70 
                   s  rsL   pd   L   ++dge++l+    +
   KOO24730.1 284 RSALRSLVMAPDYGRLLATTADGEMHLIAYTAE 316
                  566788888888777788899***999865444 PP

  == domain 3  score: 9.3 bits;  conditional E-value: 0.0003
  ANAPC4_WD40  33 eedkedsevrsLaWkpdgklLavaysdgevrllda 67 
                          v+ La++ dg  La +++dg   +++ 
   KOO24730.1 431 RGRLGAAAVTRLAFSADGAYLAASCADGLTVVFEL 465
                  44556689********************7666543 PP

  == domain 4  score: 1.2 bits;  conditional E-value: 0.1
  ANAPC4_WD40  40 evrsLaWkpdgklLavaysdge 61 
                    ++La +pdg++ a a +dg 
   KOO24730.1 589 MPTALALSPDGNFVATAAKDGF 610
                  45799***************95 PP

  == domain 5  score: -3.2 bits;  conditional E-value: 2.4
  ANAPC4_WD40  18 ellvfRlngqrvwtleedkedsevrsLaWkpdgklLa 54 
                  e+++ R n     ++++d+   +v++L+ + dg l a
   KOO24730.1 704 EIAAERANAPVAESAARDALAAKVQALKHELDGLLAA 740
                  567777777777777889999999***9999996544 PP

>> PQQ_3  PQQ-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.2   0.1    0.0073        33      22      36 ..     214     228 ..     207     228 .. 0.92
   2 ?   -0.5   0.1      0.42   1.9e+03      13      33 ..     243     263 ..     235     264 .. 0.85
   3 ?    4.5   0.0     0.012        54       3      34 ..     276     309 ..     275     312 .. 0.83
   4 ?    4.3   0.0     0.013        59      12      40 .]     342     377 ..     336     377 .. 0.82
   5 ?   -1.8   0.1       1.1     5e+03       5      31 ..     430     458 ..     427     464 .. 0.70

  Alignments for each domain:
  == domain 1  score: 5.2 bits;  conditional E-value: 0.0073
       PQQ_3  22 glvyvgtgdGtlyAl 36 
                 g++y+g++ Gt++Al
  KOO24730.1 214 GTLYAGAESGTVTAL 228
                 9*************8 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 0.42
       PQQ_3  13 vnsspavdgglvyvgtgdGtl 33 
                 +++++++dg +  vg+ dG++
  KOO24730.1 243 AVRALVTDGTHMTVGCADGSV 263
                 4467899************87 PP

  == domain 3  score: 4.5 bits;  conditional E-value: 0.012
       PQQ_3   3 vlWsvqlpgpvnsspavdg..glvyvgtgdGtly 34 
                 +lW+v+l+  + +s++++   g++ ++t dG ++
  KOO24730.1 276 PLWTVSLGRSALRSLVMAPdyGRLLATTADGEMH 309
                 79******99999**88752478********876 PP

  == domain 4  score: 4.3 bits;  conditional E-value: 0.013
       PQQ_3  12 pvnssp....avdggl...vyvgtgdGtlyAlDaet 40 
                 pv++++    a++gg+   + + ++dGt+++ Da+t
  KOO24730.1 342 PVVCAAmlphAAGGGKghdIITCSEDGTMRCTDART 377
                 56655567788899888889999***********98 PP

  == domain 5  score: -1.8 bits;  conditional E-value: 1.1
       PQQ_3   5 Wsvqlpgpvnsspavdgglvyvgtg..dG 31 
                 W+ +l++++++ +a++ +  y +++  dG
  KOO24730.1 430 WRGRLGAAAVTRLAFSADGAYLAAScaDG 458
                 99999998888897765555555543355 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1562 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1150  (0.0641419); expected 358.6 (0.02)
Passed bias filter:                      513  (0.0286129); expected 358.6 (0.02)
Passed Vit filter:                        58  (0.00323498); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.99u 0.27s 00:00:01.26 Elapsed: 00:00:00.46
# Mc/sec: 10281.95
//
Query:       KOO24731.1  [L=298]
Description: glyceraldehyde-3-phosphate dehydrogenase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    9.1e-24   83.8   0.0    1.3e-23   83.3   0.0    1.2  1  Gp_dh_C   Glyceraldehyde 3-phosphate dehydrogenase, C-termina
    4.9e-18   65.3   0.0      8e-18   64.7   0.0    1.3  1  Gp_dh_N   Glyceraldehyde 3-phosphate dehydrogenase, NAD bindi


Domain annotation for each model (and alignments):
>> Gp_dh_C  Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   83.3   0.0   1.4e-27   1.3e-23       1     155 [.     135     297 ..     135     298 .] 0.91

  Alignments for each domain:
  == domain 1  score: 83.3 bits;  conditional E-value: 1.4e-27
                 HHHHHHHHHHHHEEEEEEEEE..EEECTTTSBSSSS--....SSTTTTSBTTCSSEEEE-THHHHHHHHSGGGTTTEEEEEEEESSSSE..EEEEEEEE CS
     Gp_dh_C   1 Laplakvlndkfgikkglmtt..vhaytndQkllDgps...kkdlrraraaaeniiptstgaakavglVlpelkgkldglAvrVPtpnv..svvdlvve 92 
                 La ++kv++d+fgi  + + +  v ++ + Q+++ gp+     d+r++   ++++ipt   a  av + lp+l+ +l g A+rVP  ++  sv+dl+ve
  KOO24731.1 135 LALFIKVVEDAFGIALASASVlqVCSTQELQQVCAGPAgenGLDWRSSTGGSKDVIPTVAEAVGAVRSMLPDLADNLFGAAFRVPAADGsaSVIDLTVE 233
                 67899*********87766651166777889999998854467********************************************9733689***** PP

                 ESSTS-HHHHHHHHHHHHH.TTTTTTEEEEHSHHHGGGGTTGCSSEEEEGGGCEEETTTEEEEE CS
     Gp_dh_C  93 lekevtveevnaalkeaae.galkgilsyteeelvssDlvgdphssifdaketivveenlvkvv 155
                 l+  +  e++ aa+++aa  ++++g l+++++++  sD+  d +s+ifd +++++++ ++vk+v
  KOO24731.1 234 LKTGADLEQIRAAVSAAAScEPMRGRLGFRDDDVDGSDFEADGRSAIFDGRASMALSPTFVKLV 297
                 *****************9999*****************************************97 PP

>> Gp_dh_N  Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.7   0.0   8.9e-22     8e-18      21     100 ..       2      83 ..       1      84 [. 0.94

  Alignments for each domain:
  == domain 1  score: 64.7 bits;  conditional E-value: 8.9e-22
                 HHTTCEEEEEE-.TS-HHHHHHHHHEETTTEC-SS-EEEE.TTEEEETTEEEEEE--SSGGGS-CHHHTSSEEEE-SSS--S CS
     Gp_dh_N  21 eekelevvaind.ltdletlayllkyDsvhgrfkgeveae.eealvvngkkikvlaekdpeelpwkelgvdlVvestGvftd 100
                 e++ ++++aind  +d+e++ay+l++D vhg ++++vea   ++l++ng++++++++++p++++w++ g+ +++e++G ft+
  KOO24731.1   2 ETDGVDLIAINDpYVDAEYMAYMLQHDEVHGPCRHTVEAPdRHTLIINGRQVTLMNTREPSKVDWRSGGARYIIEASGRFTS 83 
                 567899******99*************************95667************************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (298 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       367  (0.0204696); expected 358.6 (0.02)
Passed bias filter:                      310  (0.0172904); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.42u 0.26s 00:00:00.68 Elapsed: 00:00:00.40
# Mc/sec: 2219.38
//
Query:       KOO24732.1  [L=783]
Description: isopentenyl-diphosphate delta-isomerase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    9.3e-28   97.4   0.0    4.8e-27   95.1   0.0    2.0  2  SQS_PSY   Squalene/phytoene synthase
    1.1e-16   61.1   0.0    2.3e-16   60.0   0.0    1.6  1  NUDIX     NUDIX domain


Domain annotation for each model (and alignments):
>> SQS_PSY  Squalene/phytoene synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.0      0.11     1e+03     192     246 ..     110     200 ..      96     208 .. 0.72
   2 !   95.1   0.0   5.4e-31   4.8e-27       3     261 ..     367     691 ..     365     692 .. 0.86

  Alignments for each domain:
  == domain 1  score: -1.0 bits;  conditional E-value: 0.11
                 .-SHHHHHHHHHHHHHHHHHHHHHHHTGGG.....................................S.-HHHHHHHHHHHHHHHHHHHHHH CS
     SQS_PSY 192 vrsaelrallrrlaerArelldearellkq.....................................lpdrrarpalllavalyrailerie 246
                  ++a++r+l ++l ++A +l +e  +++++                                     l  ++a   +++ +++++++ +r+e
  KOO24732.1 110 IKHAAVRKLRHELGTKAGALKAENFKYMGRvhywaadsvthgpntpwgeheidylllyqmppgttleL-APNADEVMAVDWVTAAELTRRME 200
                 56788999999999999999999999999977777777777777666666666666666666666665.44566666777777777777666 PP

  == domain 2  score: 95.1 bits;  conditional E-value: 5.4e-31
                 HH-HHHHHHHTTS-HHHHHHHHHHHHHHHHHT-.-----.........------------...............---------THHHHHHHHHHHT.- CS
     SQS_PSY   3 aasksfylaslllppelRdalgalYafcreaddlvDdvseplqara.rldwwrdavdavya.............edklkpprepvlralaqlirtyk.l 86 
                 ++s+sf++++++lp +l  +++ +Y + r +d+++Dd +  + ++  + +++r+  ++ +              e++l + + +v+r++ +l + ++ +
  KOO24732.1 367 EVSRSFAAVIRQLPSDLAVDILIFYIVLRGLDTVEDDMTAFKGKEHvKCEHLRAFGREYLGdekwsmsgvgegaERELLEGFGAVSRVFNRLPKSSQdV 465
                 689***********************************9433333335555555444333345577777665544899****************9999* PP

                 -HHHHHHHHHHTS--SS-.....--SHHHHHHHHHHHHHHHHHHHHHHH-S.......................S-HHHHHHHHHHHHHHHHHHHHHT- CS
     SQS_PSY  87 pkellleliegmeadleftr...yetlddLeeYcyrvagvVgelclrllgar......................rsdralaeaarrlGkalQltnilRd 160
                 ++++  ++ +gm+ +++ +     ++ +++ +Yc+ vag Vge +  ++ +r                      +++++++  a+++G++lQ tnilRd
  KOO24732.1 466 IRDITIQMGDGMADFVSVDMgqgTVSCEAYARYCHMVAGLVGEGLSLIFVGRgmeteaclgqgvfvwpfckapaDKPANTLGIANSMGLFLQKTNILRD 564
                 *****************955554889*************************999999999999999999998885556899999*************** PP

                 --SHHHHTT..S-HHHHHHHT--HH..HHHHT-..........................-SHHHHHHHHHHHHHHHHHHHHHHHTGGGS.-HHHHHHHH CS
     SQS_PSY 161 vpeDaergrvyLPadvlkefgvsee..dllrkg.........................vrsaelrallrrlaerArelldearellkqlpdrrarpall 232
                 + eD   +r ++P+dv k+f  + +  + +r +                          + +   ++l++l++ A el  ++ ++l+ l+ +++ ++++
  KOO24732.1 565 YLEDYVDNRAFWPQDVRKKFARTNDlgEFARPTahgagakkgafdakadplgaqivgmGTRTTGLDCLNFLVADALELVPDCLTYLEMLKTPEVFRFCA 663
                 ****99*************866655444444449999*******************984444577899******************************* PP

                 HHHHHHHHHHHHHHHTTT-TTT------H CS
     SQS_PSY 233 lavalyrailerieaadydvlsrrvklsl 261
                 ++ +++ a+le++ ++++ v+++ vk+++
  KOO24732.1 664 IPQVMAIATLEEVFDNPK-VFTGVVKIRK 691
                 ***************999.6788888775 PP

>> NUDIX  NUDIX domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.0   0.0   2.6e-20   2.3e-16       3     128 ..      50     207 ..      48     210 .. 0.82

  Alignments for each domain:
  == domain 1  score: 60.0 bits;  conditional E-value: 2.6e-20
                 EEEEEEEEEETTSEEEEEEES..SSSTTT.E....E.SS.............EEECBTTSHHHHHHHHHHHHHHS.....EEEEEEEEEEEEEEEEEEE CS
       NUDIX   3 rravgvvllnekgevLlvrrs..kkpfpg.W....e.lP.............gGkvepgEtpeeAArREleEEtG.....leaellellgrlhylapyd 75 
                 +ra++v+l+++kg++Ll++r+  k +fp+ W    + +P              Gk ep   ++ AA+R+l++E+G     l+ae+ +++gr+hy+a + 
  KOO24732.1  50 HRAFSVMLFDDKGRLLLQQRAasKITFPHvWtntcCsHPlhgqtppevdevyDGKTEPM-GIKHAAVRKLRHELGtkagaLKAENFKYMGRVHYWAADS 147
                 99****************************98886357788888889777777777754.5668***********77777788999***********99 PP

                 EEEEE.....EEEEEEEEE..EEECSGCSST..STTTEEEEEEEEHHHHHHHHTHCTHHHHH CS
       NUDIX  76 gpygd.....eheilyvfl..eevegelepn..denevsevrwvpleellkeklaaesrkll 128
                   +g+     ehei+y++l    + g+      + +ev +v wv+ +el   +++++   + 
  KOO24732.1 148 VTHGPntpwgEHEIDYLLLyqM-PPGTTLELapNADEVMAVDWVTAAEL-TRRMEDPTLLWS 207
                 99999999*******9999953.44433333366***************.666666555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (783 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       560  (0.0312343); expected 358.6 (0.02)
Passed bias filter:                      484  (0.0269954); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.65u 0.28s 00:00:00.93 Elapsed: 00:00:00.43
# Mc/sec: 5411.21
//
Query:       KOO24733.1  [L=631]
Description: lysyl-tRNA synthetase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    7.3e-78  261.8   0.0    9.6e-78  261.4   0.0    1.1  1  tRNA-synt_2      tRNA synthetases class II (D, K and N)
    9.7e-16   57.5   0.0    1.1e-14   54.2   0.0    2.2  2  tRNA_anti-codon  OB-fold nucleic acid binding domain
    2.6e-10   40.3   4.5    5.5e-10   39.2   4.5    1.6  1  WHEP-TRS         WHEP-TRS domain
    0.00068   19.2   0.0        0.2   11.1   0.0    2.3  2  tRNA-synt_2d     tRNA synthetases class II core domain (F)
     0.0092   15.0   2.1      0.014   14.4   2.1    1.2  1  DEC-1_N          DEC-1 protein, N-terminal region
  ------ inclusion threshold ------
      0.018   14.9   0.7      0.066   13.1   0.5    1.9  2  RuvC             Crossover junction endodeoxyribonuclease Ruv
       0.51   10.4   3.1        3.7    7.6   0.8    2.7  2  DUF4054          Protein of unknown function (DUF4054)


Domain annotation for each model (and alignments):
>> tRNA-synt_2  tRNA synthetases class II (D, K and N)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  261.4   0.0   3.7e-81   9.6e-78       2     313 ..     283     627 ..     282     628 .. 0.92

  Alignments for each domain:
  == domain 1  score: 261.4 bits;  conditional E-value: 3.7e-81
                  CCHHHHTHHHHC.CSHHHHHHHHHHHHHHHHHHHHHHHTT-EE----SEESS--SSSS--EEEEETTT.TEEE-E-S-SHHHHHHHHHCTHSEEEEEE CS
                  xxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  tRNA-synt_2   2 eelrlknryldl.rtekvskvlrlrstvtkavrkyleengfieietPiLsksdteegarlFkvksrekekeffaLtqspqlylellivagidrvfqia 98 
                  ++ r+++ryld+  +++v++++ +r+++t+ +r++++e+gf+eietP+L+++ ++++a++F + +++    +  L+++++lyl++liv+g+drv++++
   KOO24733.1 283 VNKRYRQRYLDMiVNPSVRQTFATRARITSFIRRHMDERGFLEIETPCLQSEPGGAEAKPFETFHNALGMPLT-LRIATELYLKRLIVGGFDRVYELG 379
                  67899**********************************************************9999965776.************************ PP

                  EEE--S--BTTB-S-CEEEEEEEEET-SCHHHHHHHHHHHHHHHHHHHHCSCCCCCHTTTTTSEE-SSS-EEEEHHHHHHHHHTS..........-SS CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..........xxx RF
  tRNA-synt_2  99 raFRaEdsrtdrhlaEFtqieaemsfieeedimqvleelikslvkevlessakdiefvirrnskdlkkpfkrltykeaieklnei..........gkd 186
                  r FR+E ++t++++ EFt+ie++ +++++ d+m+++e li   +k+v ++    +  + + ++ dl+ p++r+t+++ ++++  +          + d
   KOO24733.1 380 RIFRNEGISTRHNP-EFTSIELYQAYADYTDMMDLAEALIAGAAKQV-TGG---TVVQYQGTTVDLTPPWRRVTMSDLVREAMPNgfdfaaltgaEGD 472
                  **************.********************************.433...3444455556*****************77778888888888666 PP

                  --HHHHHHHHH........................HS--SEEEEEEEBGGGSTTCBBBSTTSTTBBSEEEEEETTEEEEEEEEB--SHHHHHHHHHHC CS
                  xxxxxxxxxxx........................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  tRNA-synt_2 187 ldkaderalvk........................keknepvfvtdfPaelkpFyarkeeddkkltesyDllingvElvgGslRiedpeeleeklksk 260
                  l +a e a                            +  +p+fvt++P e++p++++++++ + +te+++l++ g El+++ +++ dp  ++++++++
   KOO24733.1 473 LARAREAAAAAgvpnvnecqtvgkvlalcfdelceGNLIQPTFVTEYPTEISPLAKPHRSK-PGVTERFELFVVGRELANAFSELTDPVDQRQRFEAQ 569
                  666666666668889999999999999999999988899**********************.9*********************************** PP

                  CHH.....SSSGGGGHHHHHHHHCT--SEEEEEEEHHHHHHHHCT-SSGGGCSSS-XX CS
                  xxx.....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  tRNA-synt_2 261 gld.....eeaeekfswylealeyGapphgGlglGldRlvmlllgsesIrdviaFPkl 313
                    +     eea   ++++l+ale G+pp gG+g+G+dRl+mll++s sI+dviaFP l
   KOO24733.1 570 AAKkaagdEEACGVDEDFLNALEHGMPPCGGMGIGIDRLIMLLTDSASIKDVIAFPLL 627
                  9999999999999*******************************************75 PP

>> tRNA_anti-codon  OB-fold nucleic acid binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.2   0.0   4.2e-18   1.1e-14       1      76 []     189     266 ..     189     266 .. 0.97
   2 ?    0.6   0.0      0.21   5.5e+02      31      64 ..     402     436 ..     395     443 .. 0.84

  Alignments for each domain:
  == domain 1  score: 54.2 bits;  conditional E-value: 4.2e-18
                      EEEEEEEEEEEEEEETTEEEEEEEETTEEEEEEEET....HHHHHHHTTS-TTSEEEEEEEEEECTTSSEEEEEEEEEEE CS
  tRNA_anti-codon   1 VtvaGrvtsisdrsggkvifidlrDgtgriqvvlfr....eeatklaenlkeGdvvrvtGrvkrrpggelelkveeiell 76 
                      V v Gr+ ++  r  gk++f++++D +g++q++l +    e++++l++  + Gd+v+++G vkr+++gel++++ e+++l
       KOO24733.1 189 VAVTGRILTR--RIFGKLAFFTIQDASGTLQLYLEKkrlgEGFESLLSLTDAGDIVGARGSVKRTDKGELSVYAREWTML 266
                      7899******..****************************************************************9975 PP

  == domain 2  score: 0.6 bits;  conditional E-value: 0.21
                      EEEEETHHHHHHHTTS-TTSEEEEE.EEEEECTTS CS
  tRNA_anti-codon  31 qvvlfreeatklaenlkeGdvvrvt.Grvkrrpgg 64 
                      q++++ +++++lae l  G   +vt G+v  ++g 
       KOO24733.1 402 QAYADYTDMMDLAEALIAGAAKQVTgGTVVQYQGT 436
                      66677789999999999********9999999876 PP

>> WHEP-TRS  WHEP-TRS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.2   4.5   2.2e-13   5.5e-10       1      39 [.      52      94 ..      52     107 .. 0.84

  Alignments for each domain:
  == domain 1  score: 39.2 bits;  conditional E-value: 2.2e-13
    WHEP-TRS  1 LnekiaaQGelVRkLKaek....apkdeidaaVkkLLaLKaqy 39
                L+++ia+QGe V++LKa+     a+k+e+daaV+ LL+LKa+ 
  KOO24733.1 52 LESEIAEQGERVKELKAAAkvgkAEKAEVDAAVQLLLELKAKA 94
                789*************9855566*****************986 PP

>> tRNA-synt_2d  tRNA synthetases class II core domain (F)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.1   0.0   7.9e-05       0.2     104     143 ..     375     415 ..     372     449 .. 0.73
   2 !    5.7   0.0    0.0034       8.8     210     234 ..     597     621 ..     580     626 .. 0.81

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 7.9e-05
                   EEEEEEEEBSST-SSSB-SEEEEEEEEEEETT.--HHHHHH CS
  tRNA-synt_2d 104 iisigrvfRrdavDathlaeFhqveglvvden.vsladlkg 143
                   +  +gr+fR++ +  +h +eF+++e   +  +   + dl  
    KOO24733.1 375 VYELGRIFRNEGISTRHNPEFTSIELYQAYADyTDMMDLAE 415
                   56689********************9865444044655544 PP

  == domain 2  score: 5.7 bits;  conditional E-value: 0.0034
                   EEEEEEEEHHHHHHHHHT-SSGHHH CS
  tRNA-synt_2d 210 sgfafGlGveRlamlkygieDiRel 234
                   ++ ++G+G++Rl ml ++   i+++
    KOO24733.1 597 PCGGMGIGIDRLIMLLTDSASIKDV 621
                   56789***********999988876 PP

>> DEC-1_N  DEC-1 protein, N-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.4   2.1   5.5e-06     0.014      93     146 ..      69     124 ..      25     164 .. 0.77

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 5.5e-06
     DEC-1_N  93 gpqvGaalqsl..lplqsldgllGaaapapalaaapppapapvpddpapapaapqa 146
                  ++vG+a +     ++q l +l  +aap pa + +  p+p+ ++ +pap+p    a
  KOO24733.1  69 AAKVGKAEKAEvdAAVQLLLELKAKAAPTPAASKPTKPPPTTTTKEPAPTPTKRAA 124
                 4667766543335678889999999******999999**************87632 PP

>> RuvC  Crossover junction endodeoxyribonuclease RuvC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.5   2.6e-05     0.066      86     139 ..      48     100 ..      33     102 .. 0.71
   2 ?   -1.8   0.0         1   2.6e+03      98     132 ..     114     150 ..     110     154 .. 0.75

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 2.6e-05
                 HHHHHTTT--EEEEEHHHHHHHHTSSTT--HHHHHHHHHHHTT----SS.S-TH CS
        RuvC  86 ilaalereisvaeytpsqvkkavtGigkaekeqvqalvkrlLklkakpkpadaa 139
                  la le ei  +    +++k a   +gkaek+ v a v+ lL+lkak  p+ aa
  KOO24733.1  48 HLAELESEIAEQGERVKELK-AAAKVGKAEKAEVDAAVQLLLELKAKAAPTPAA 100
                 33444444333333444555.55789*********************9998776 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 1
                 EEEHHHHHHHHTSSTT--HH.HH.HHHHHHHTT---- CS
        RuvC  98 eytpsqvkkavtGigkaeke.qv.qalvkrlLklkak 132
                 e +p+  k+a   +++ae e  v + +v+rl k+++ 
  KOO24733.1 114 EPAPTPTKRAAPSNADAEEElSVdELMVRRLAKVQQM 150
                 5577888999999999987633435799999999875 PP

>> DUF4054  Protein of unknown function (DUF4054)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.6   0.8    0.0014       3.7      16      72 ..      18      79 ..       5      94 .. 0.73
   2 ?    1.6   0.1      0.11   2.8e+02      28      66 ..     148     193 ..     144     206 .. 0.63

  Alignments for each domain:
  == domain 1  score: 7.6 bits;  conditional E-value: 0.0014
     DUF4054 16 iqawldlAallvsakrfgklreqalallaAHll.....aadgraaaaggaggaaagrvtsas 72
                 qa+l  A++ + +    ++r+ a ++++ Hl+      a++    ++ +++a +g++ +a+
  KOO24733.1 18 PQAVLVRATARMLPAVLAARRPTARMMCTVHLAeleseIAEQGERVKELKAAAKVGKAEKAE 79
                58899999999999*******************55554444444444444444444444444 PP

  == domain 2  score: 1.6 bits;  conditional E-value: 0.11
     DUF4054  28 sakrfgklreqalallaAHll.......aadgraaaaggaggaaag 66 
                 ++ r +  +++a  + a Hl+       a  ++ ++++ a++a +g
  KOO24733.1 148 QQMRDDGVEPYAYSYTATHLAmklaadfATLQNGEEEAAADVAVTG 193
                 5667777899999999****97774444344444444444444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (631 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       736  (0.0410508); expected 358.6 (0.02)
Passed bias filter:                      545  (0.0303977); expected 358.6 (0.02)
Passed Vit filter:                        64  (0.00356964); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.62u 0.30s 00:00:00.92 Elapsed: 00:00:00.44
# Mc/sec: 4351.40
//
Query:       KOO24734.1  [L=334]
Description: gamma-glutamyltransferase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.7e-55  188.8   0.0    9.5e-55  186.3   0.0    1.8  1  G_glu_transpept  Gamma-glutamyltranspeptidase


Domain annotation for each model (and alignments):
>> G_glu_transpept  Gamma-glutamyltranspeptidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  186.3   0.0   5.3e-59   9.5e-55     225     510 ..       1     315 [.       1     316 [. 0.89

  Alignments for each domain:
  == domain 1  score: 186.3 bits;  conditional E-value: 5.3e-59
                      E-TTCSHHHHHHHHHHHHCTTTGGGCTTTCHHHHHHHHHHHHHHHHHHHHH-SSTTTSSSGHCHHHHHT-HHHHHHHHTT.BTTB..SG..... CS
  G_glu_transpept 225 epppssggivllqiLnilegfdlkslssnsaetlhllvEamklayadRsrylgDpdfvknptelveellskeyakeraklIkdkaatps..... 313
                      ++ppssgg+++l++Ln+l+  ++ + ++ +++++ ++++a  la+adR++ylgD dfv++p   ++ lls++ya+era+ I ++   ++     
       KOO24734.1   1 MAPPSSGGVATLLALNTLDAARKLEGGPSDVASWARMIDAQNLAFADRNEYLGDADFVDVP---IDGLLSPAYAAERARAIFRTDGRAAptpip 91 
                      589*******************99999999****************************988...*****************9998888888*** PP

                      ........GGCSCGGCSCG.TTEEEEEEEEETTS-EEEEEEEESSTTTTSEBETTTTEBE--GGGGSBS.TS..TTSCSTTSTT.......... CS
  G_glu_transpept 314 ........seyykaaeaaeesggTthlsvvDregnaVSltstinllFGsgvvvpgtGilLnnemddfst.gvenafgldpspan.......... 388
                              ++ ++ a + ++++gT h+s+v + +  V++t+t++++ Gsgvv pg G lLn+e+ddf++ gv  +    +  an          
       KOO24734.1  92 fgvppgaeHSGGRYASSRAPEHGTMHYSIVTE-RHLVAVTTTVQSGMGSGVVLPGRGLLLNDELDDFDAlGVDPTT--RKPYANgpeggkkprr 182
                      *****965444455555556**********75.59*********************************66443332..2222335569999*** PP

                      ........B--TT----B----EEEEE.....TTEEEEEEEEESGGGHHHHHHHHHHHHHTT-S-HHHHHHS--EEESSSSTEEEESTTS.HHH CS
  G_glu_transpept 389 ........aiePgkRplssmaPtivlk.....dgkpvlvlGaaGGsriisavlqvlvnvldlgldlqeavdaprihhqllpdkvevEegfseev 469
                              +   gkRp+ssm+P++v++       +p++++Ga+GG++ii +vl+ l+n+l++++d q+a+dapr + q       +E+++ + +
       KOO24734.1 183 taldpadaQSLGGKRPRSSMSPMLVFNrtldgSLTPWMAIGAMGGATIIGSVLHGLINTLAWQMDAQAAIDAPRAYPQ-NEVDQPLEPALYARF 275
                      *99999988889***************998444479*****************************************9.3335679******** PP

                      HHHHHHTTSEEEESSSTCCCEEEEEEEETTTEEEEEE-TTT CS
  G_glu_transpept 470 veeLearGhkvkevedsssvvaavavakekgvleaasDprk 510
                       ++L+a+G++ ++ +   ++  ++++   +g +++a+D+ +
       KOO24734.1 276 GAQLRALGYNATRGDLLDHYLYIAQIC-ADGLYRGAADTTR 315
                      ***************999999999998.9999****99865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (334 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       312  (0.017402); expected 358.6 (0.02)
Passed bias filter:                      271  (0.0151152); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.24s 00:00:00.71 Elapsed: 00:00:00.42
# Mc/sec: 2374.62
//
Query:       KOO24735.1  [L=1143]
Description: leucine-rich repeat-containing protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.2e-28   95.3  14.3     0.0016   18.3   0.2    9.7  9  LRR_6     Leucine Rich repeat
    3.6e-13   49.6   0.5    6.9e-13   48.7   0.5    1.5  1  DUF4476   Domain of unknown function (DUF4476)
     0.0068   16.8   6.1        5.3    7.6   0.5    4.1  4  LRR_4     Leucine Rich repeats (2 copies)
  ------ inclusion threshold ------
        0.3   10.9  11.2         11    5.8   1.8    5.2  5  LRR_8     Leucine rich repeat


Domain annotation for each model (and alignments):
>> LRR_6  Leucine Rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.6   0.0      0.17   7.7e+02       7      24 .]     485     502 ..     484     502 .. 0.87
   2 !   11.3   0.1   6.3e-05      0.28       2      19 ..     508     525 ..     507     530 .. 0.88
   3 !   18.3   0.2   3.6e-07    0.0016       2      24 .]     536     558 ..     535     558 .. 0.95
   4 !   10.3   0.0   0.00014      0.61       1      24 []     563     586 ..     563     586 .. 0.90
   5 !    8.3   0.0   0.00061       2.7       2      20 ..     592     610 ..     591     614 .. 0.84
   6 !   12.7   0.1   2.2e-05       0.1       2      24 .]     620     642 ..     619     642 .. 0.95
   7 !   13.4   0.0   1.4e-05     0.061       1      24 []     647     670 ..     647     670 .. 0.94
   8 !   15.7   0.0   2.5e-06     0.011       5      24 .]     679     698 ..     675     698 .. 0.92
   9 !    4.8   0.1    0.0075        34       1      16 [.     703     718 ..     703     720 .. 0.91

  Alignments for each domain:
  == domain 1  score: 0.6 bits;  conditional E-value: 0.17
       LRR_6   7 eLdLsgNdIgDeGaeaLa 24 
                 + +L+++++g +Ga + a
  KOO24735.1 485 HINLRHHGMGVKGALSVA 502
                 78***********98765 PP

  == domain 2  score: 11.3 bits;  conditional E-value: 6.3e-05
       LRR_6   2 nthLteLdLsgNdIgDeG 19 
                 nt +++L+L +N + D+G
  KOO24735.1 508 NTQIRSLNLGDNWLRDDG 525
                 999**************9 PP

  == domain 3  score: 18.3 bits;  conditional E-value: 3.6e-07
       LRR_6   2 nthLteLdLsgNdIgDeGaeaLa 24 
                 n +Lt+L+L++N Ig  G+++++
  KOO24735.1 536 NASLTSLNLADNRIGLPGIMSIC 558
                 99*******************98 PP

  == domain 4  score: 10.3 bits;  conditional E-value: 0.00014
       LRR_6   1 snthLteLdLsgNdIgDeGaeaLa 24 
                 +n++L eL+L+gN+++D  a  La
  KOO24735.1 563 QNSTLAELSLRGNELNDRAAAPLA 586
                 69***************9888776 PP

  == domain 5  score: 8.3 bits;  conditional E-value: 0.00061
       LRR_6   2 nthLteLdLsgNdIgDeGa 20 
                 +++Lt++dLs+N +g e +
  KOO24735.1 592 SSSLTKVDLSYNAFGEEAG 610
                 799**********997765 PP

  == domain 6  score: 12.7 bits;  conditional E-value: 2.2e-05
       LRR_6   2 nthLteLdLsgNdIgDeGaeaLa 24 
                 ++hL  ++L++N +  +Ga+a+a
  KOO24735.1 620 HSHLLDVNLKWNALKAKGATAIA 642
                 68*******************98 PP

  == domain 7  score: 13.4 bits;  conditional E-value: 1.4e-05
       LRR_6   1 snthLteLdLsgNdIgDeGaeaLa 24 
                 +n+ L  +dL +N++ D+G+ a+a
  KOO24735.1 647 QNSVLNRVDLGWNGLEDAGIAAIA 670
                 5899******************98 PP

  == domain 8  score: 15.7 bits;  conditional E-value: 2.5e-06
       LRR_6   5 LteLdLsgNdIgDeGaeaLa 24 
                 Lt+Ld+s+N ++ +G+e+La
  KOO24735.1 679 LTHLDVSHNRVNPAGCEKLA 698
                 9*****************98 PP

  == domain 9  score: 4.8 bits;  conditional E-value: 0.0075
       LRR_6   1 snthLteLdLsgNdIg 16 
                 +n++L +L+L +N +g
  KOO24735.1 703 NNHNLLSLELGFNPMG 718
                 79***********876 PP

>> DUF4476  Domain of unknown function (DUF4476)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.7   0.5   1.5e-16   6.9e-13       2      87 ..    1004    1093 ..    1003    1097 .. 0.89

  Alignments for each domain:
  == domain 1  score: 48.7 bits;  conditional E-value: 1.5e-16
     DUF4476    2 msdksfeqlveklk....kasfdddklklleqalankaftcsqvvqllklfsfdddrlkalkllapnivDkqnsetiidsftfssdkkka 87  
                  m++ksfe l+++l+    ++  d+dk++l++qa+ +++f++ qv++l++++s+ + +++a+ ll+p+++D  n++  ++s++ +sd++++
  KOO24735.1 1004 MKPKSFEILIQTLSvqgtHKCSDFDKVNLIKQASMRNYFSSTQVKALIDTVSYRKGKIEAAVLLHPRTTDQANFHHALKSLDKDSDRQDI 1093
                  78899999999887333255679***************************************************************9986 PP

>> LRR_4  Leucine Rich repeats (2 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.6   0.5    0.0012       5.3       2      36 ..     510     549 ..     509     554 .. 0.72
   2 !    6.7   0.3    0.0024        11       2      33 ..     538     575 ..     537     587 .. 0.68
   3 ?    1.9   0.1     0.076   3.4e+02       5      33 ..     569     603 ..     565     608 .. 0.65
   4 !    7.0   0.1    0.0019       8.4       3      33 ..     679     715 ..     677     719 .. 0.68

  Alignments for each domain:
  == domain 1  score: 7.6 bits;  conditional E-value: 0.0012
                 S--EEE--SS---E-S-......HHH-TT--EEE-.-S--- CS
       LRR_4   2 nLevLdLsnNqltdipl......leklpnLkeLdLsgNnli 36 
                 + ++L+L++N l+d +       l  + +L++L+L +N +i
  KOO24735.1 510 QIRSLNLGDNWLRDDGThaiakvLVTNASLTSLNLADN-RI 549
                 67899999999997444565444447899999999777.54 PP

  == domain 2  score: 6.7 bits;  conditional E-value: 0.0024
                 S--EEE--SS---E-S-....HH...H-TT--EEE-.-S CS
       LRR_4   2 nLevLdLsnNqltdipl....le...klpnLkeLdLsgN 33 
                 +L++L+L++N++  +p+    ++   ++  L eL+L gN
  KOO24735.1 538 SLTSLNLADNRIG-LPGimsiCKhmqQNSTLAELSLRGN 575
                 79**********9.9985432223322333777777666 PP

  == domain 3  score: 1.9 bits;  conditional E-value: 0.076
                 EEE--SS---E-S-..HH...H.-TT--EEE-.-S CS
       LRR_4   5 vLdLsnNqltdipl..le...k.lpnLkeLdLsgN 33 
                 +L+L++N l d     l+   k   +L+++dLs N
  KOO24735.1 569 ELSLRGNELNDRAAapLAeafKaSSSLTKVDLSYN 603
                 67777777775444553345543777888888887 PP

  == domain 4  score: 7.0 bits;  conditional E-value: 0.0019
                 --EEE--SS-........--E-S-HH....H-TT--EEE-.-S CS
       LRR_4   3 LevLdLsnNq........ltdiplle....klpnLkeLdLsgN 33 
                 L++Ld s+N+        l      +    ++ nL +L L +N
  KOO24735.1 679 LTHLDVSHNRvnpagcekL------AegikNNHNLLSLELGFN 715
                 9*********444443333......244437999999999445 PP

>> LRR_8  Leucine rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.8   0.5    0.0054        24      27      61 .]     511     549 ..     503     549 .. 0.64
   2 ?    5.8   1.8    0.0025        11       2      60 ..     538     604 ..     537     605 .. 0.69
   3 ?    4.9   0.5    0.0048        22       3      37 ..     567     605 ..     565     633 .. 0.73
   4 ?    2.9   0.0     0.021        95      49      60 ..     677     688 ..     666     691 .. 0.72
   5 ?   -1.8   0.1      0.62   2.8e+03      22      35 ..     702     715 ..     698     718 .. 0.80

  Alignments for each domain:
  == domain 1  score: 4.8 bits;  conditional E-value: 0.0054
                 --EEE--SS---GGGGGGGTT....--S-.EEE--SS-- CS
       LRR_8  27 LkvLdLsnNllttlspgafsg....LpsLrsLdLsgNrL 61 
                  ++L+L++N l+    +a++      +sL+sL+L +Nr+
  KOO24735.1 511 IRSLNLGDNWLRDDGTHAIAKvlvtNASLTSLNLADNRI 549
                 567777777776665555443111168888888888886 PP

  == domain 2  score: 5.8 bits;  conditional E-value: 0.0025
                 T-SEEE-TTS--S.....EE-TTSSTT-TT--EEE--SS---GGG....GGGGTT--S-.EEE--SS- CS
       LRR_8   2 nLtsLdLsnNrlt.....slddeaFkglsnLkvLdLsnNllttls....pgafsgLpsLrsLdLsgNr 60 
                 +LtsL+L +Nr+      s+++++ + +s L +L+L+ N+l+       ++af   +sL++ dLs+N 
  KOO24735.1 538 SLTSLNLADNRIGlpgimSICKHMQQ-NSTLAELSLRGNELNDRAaaplAEAFKASSSLTKVDLSYNA 604
                 58888888888754555578888877.58899999999988874311124788888888888888875 PP

  == domain 3  score: 4.9 bits;  conditional E-value: 0.0048
                 -SEEE-TTS--SEE-....TTSSTT-TT--EEE--SS-- CS
       LRR_8   3 LtsLdLsnNrltsld....deaFkglsnLkvLdLsnNll 37 
                 L +L+L+ N l++       eaFk  s+L+  dLs+N  
  KOO24735.1 567 LAELSLRGNELNDRAaaplAEAFKASSSLTKVDLSYNAF 605
                 556666666655554222247899999999999999965 PP

  == domain 4  score: 2.9 bits;  conditional E-value: 0.021
                 -S-.EEE--SS- CS
       LRR_8  49 psLrsLdLsgNr 60 
                 ++L++Ld+s+Nr
  KOO24735.1 677 AALTHLDVSHNR 688
                 567777777776 PP

  == domain 5  score: -1.8 bits;  conditional E-value: 0.62
                 TT-TT--EEE--SS CS
       LRR_8  22 kglsnLkvLdLsnN 35 
                 k+++nL +L+L+ N
  KOO24735.1 702 KNNHNLLSLELGFN 715
                 78889999999877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1143 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1698  (0.0947069); expected 358.6 (0.02)
Passed bias filter:                      407  (0.0227007); expected 358.6 (0.02)
Passed Vit filter:                        86  (0.0047967); expected 17.9 (0.001)
Passed Fwd filter:                        21  (0.00117129); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 1.19u 0.33s 00:00:01.52 Elapsed: 00:00:00.52
# Mc/sec: 6555.55
//
Query:       KOO24736.1  [L=215]
Description: hypothetical protein Ctob_009126 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (215 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       367  (0.0204696); expected 358.6 (0.02)
Passed bias filter:                      322  (0.0179597); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.40u 0.26s 00:00:00.66 Elapsed: 00:00:00.40
# Mc/sec: 1619.18
//
Query:       KOO24737.1  [L=338]
Description: ribosomal protein l1 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    3.7e-48  164.0   0.0    6.3e-48  163.2   0.0    1.4  1  Ribosomal_L1  Ribosomal protein L1p/L10e family


Domain annotation for each model (and alignments):
>> Ribosomal_L1  Ribosomal protein L1p/L10e family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  163.2   0.0   3.5e-52   6.3e-48      13     204 .]     134     327 ..     111     327 .. 0.88

  Alignments for each domain:
  == domain 1  score: 163.2 bits;  conditional E-value: 3.5e-52
                   EEEEEEESSS-TTSGGG-....-EEEEE-STSTSSC..S-EEEEE-HHHHH...HHHHTT..-SEEETCHHHHHHT-HHHHHHTCCH-SEEEEEGGG CS
  Ribosomal_L1  13 veialnlttkkpkkadqr....kpgkipLphplgke..vkiclitkdpqaeyakeakeagriakviglkklkkkyksfeakrkllkefdlfladdri 103
                    ++++ l+tk ++ka  +    kp  + Lphp+ +   ++iclitkdpq+ey++++++ g  akvig++klkkk+k++eakr+ll  +++flad r+
    KOO24737.1 134 PPVHVLLSTKTMPKAIGKakasKPVPLGLPHPYMSLetAEICLITKDPQREYKDKLAALGVRAKVIGVSKLKKKHKEYEAKRALLRAYEVFLADARV 230
                   4677777777777665555677**********654446*********************************************************** PP

                   HHHHHHHCHHHHGGGT-S-ECC..CT.BTS-HHHHHHHHCTTEEEEE-TTTSEEEEEEEETTSSHHHHHHHHHHHHHHHHHTSTTTSGSEEEEEEEE CS
  Ribosomal_L1 104 mpllpklLGkvfgkrkkmPipvltkgtvkedvkkevekalkstvvvrldkgtclsvkvGklsftaeelaeNieavvkalvekvpkkwkniksiylkt 200
                   +p+lp lLGk f+ + k+P++v+ +   k+d++ e+ek + s++ +r   gt+ s++vG++ +t+++l+eN+ a+v++ v+ +p+kw+n++s++l t
    KOO24737.1 231 LPMLPPLLGKGFFVKRKLPVAVDLT---KKDLRGELEKGVCSAL-YRHGAGTSNSMQVGTCVQTPAQLVENVVAAVEQAVRLIPGKWSNVQSLSLRT 323
                   **********************554...78********999675.555************************************************* PP

                   TTS- CS
  Ribosomal_L1 201 tmsp 204
                   t+s+
    KOO24737.1 324 TNSV 327
                   **97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (338 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       698  (0.0389313); expected 358.6 (0.02)
Passed bias filter:                      449  (0.0250432); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.23s 00:00:00.68 Elapsed: 00:00:00.38
# Mc/sec: 2673.91
//
Query:       KOO24738.1  [L=539]
Description: hypothetical protein Ctob_009124 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    9.2e-10   37.4   7.7    2.4e-05   23.5   0.1    4.8  5  EF-hand_1  EF hand
    5.6e-08   31.9   0.8     0.0079   15.7   0.0    3.2  3  EF-hand_5  EF hand
    1.3e-07   32.0   1.4    1.5e-06   28.6   0.0    3.0  2  EF-hand_7  EF-hand domain pair
    1.4e-07   30.9   0.1      0.091   12.7   0.0    4.3  3  EF-hand_6  EF-hand domain
    3.1e-05   23.7   0.1        0.2   11.5   0.0    2.9  2  EF-hand_8  EF-hand domain pair
  ------ inclusion threshold ------
      0.056   13.4   0.1       0.13   12.2   0.1    1.6  1  TerB       Tellurite resistance protein TerB
       0.38   10.7   3.1       0.96    9.4   0.0    3.0  3  EF-hand_4  Cytoskeletal-regulatory complex EF hand


Domain annotation for each model (and alignments):
>> EF-hand_1  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.6   0.1       4.5   1.2e+04       1       9 [.     164     172 ..     164     175 .. 0.76
   2 !   14.0   0.0   1.1e-05     0.028       5      27 ..     231     253 ..     227     255 .. 0.88
   3 !   23.5   0.1   9.4e-09   2.4e-05       1      28 [.     263     290 ..     263     291 .. 0.94
   4 ?   -1.6   0.1         1   2.7e+03      17      28 ..     429     440 ..     427     441 .. 0.84
   5 ?    0.5   0.1      0.22   5.8e+02      17      26 ..     477     486 ..     471     488 .. 0.86

  Alignments for each domain:
  == domain 1  score: -3.6 bits;  conditional E-value: 4.5
                 HHHHHHHHH CS
   EF-hand_1   1 elkeiFref 9  
                 ++++iF+ +
  KOO24738.1 164 DIDRIFQRA 172
                 589999976 PP

  == domain 2  score: 14.0 bits;  conditional E-value: 1.1e-05
                 HHHHHTTTSSSEEEHHHHHHHHH CS
   EF-hand_1   5 iFrefDkDgdGkIdfeEfkellk 27 
                 +F+++D Dg+G ++ +E  ++  
  KOO24738.1 231 LFKKADLDGSGAVSTSEVEQMAV 253
                 7****************999865 PP

  == domain 3  score: 23.5 bits;  conditional E-value: 9.4e-09
                 HHHHHHHHHTTTSSSEEEHHHHHHHHHH CS
   EF-hand_1   1 elkeiFrefDkDgdGkIdfeEfkellkk 28 
                 elk++++e+D Dg+G +dfeE +++l++
  KOO24738.1 263 ELKKLIAEADADGSGELDFEEIVNVLMA 290
                 79*********************99975 PP

  == domain 4  score: -1.6 bits;  conditional E-value: 1
                 EEHHHHHHHHHH CS
   EF-hand_1  17 IdfeEfkellkk 28 
                 ++f+E++ ++k+
  KOO24738.1 429 MSFSELLFMFKT 440
                 6899*9999985 PP

  == domain 5  score: 0.5 bits;  conditional E-value: 0.22
                 EEHHHHHHHH CS
   EF-hand_1  17 IdfeEfkell 26 
                 ++f+Efk ++
  KOO24738.1 477 LNFSEFKMMV 486
                 89****9986 PP

>> EF-hand_5  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.0   3.1e-06    0.0079       4      24 ..     231     251 ..     228     252 .. 0.87
   2 !   13.5   0.1   1.5e-05     0.039       1      23 [.     264     286 ..     264     289 .. 0.85
   3 ?   -3.1   0.1       2.7   6.9e+03      16      25 .]     477     486 ..     476     486 .. 0.76

  Alignments for each domain:
  == domain 1  score: 15.7 bits;  conditional E-value: 3.1e-06
                 HHHHH-SS-SSCE-HHHHHHH CS
   EF-hand_5   4 tFqaiDlNgDGkIskeELktl 24 
                 +F+++Dl+g+G +s +E +++
  KOO24738.1 231 LFKKADLDGSGAVSTSEVEQM 251
                 7***************98775 PP

  == domain 2  score: 13.5 bits;  conditional E-value: 1.5e-05
                 HHHHHHHH-SS-SSCE-HHHHHH CS
   EF-hand_5   1 lkdtFqaiDlNgDGkIskeELkt 23 
                 lk++  ++D++g+G +++eE  +
  KOO24738.1 264 LKKLIAEADADGSGELDFEEIVN 286
                 6778889*************765 PP

  == domain 3  score: -3.1 bits;  conditional E-value: 2.7
                 E-HHHHHHHH CS
   EF-hand_5  16 IskeELktlv 25 
                 ++++E+k +v
  KOO24738.1 477 LNFSEFKMMV 486
                 5789999875 PP

>> EF-hand_7  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.6   0.0   5.7e-10   1.5e-06       1      68 [.     225     286 ..     225     289 .. 0.93
   2 ?    0.2   0.8      0.41   1.1e+03      19      67 ..     448     483 ..     426     487 .. 0.54

  Alignments for each domain:
  == domain 1  score: 28.6 bits;  conditional E-value: 5.7e-10
   EF-hand_7   1 eeklkeaFkelDtdgdgyldkeellrllrkifqgagegsklsdeelellfkefDtdkdGvisfdEFlk 68 
                 +ekl+  Fk+ D dg+g ++ +e++++          + ++ + el++l+ e D d++G+++f+E ++
  KOO24738.1 225 REKLEPLFKKADLDGSGAVSTSEVEQMAV------KLKIDIKPAELKKLIAEADADGSGELDFEEIVN 286
                 5899*********************9999......889999999*********************876 PP

  == domain 2  score: 0.2 bits;  conditional E-value: 0.41
   EF-hand_7  19 ldkeellrllrkifqgagegsklsdeelellfkef........DtdkdG.visfdEFl 67 
                 l+++                       l ++f  +         +d+dG +++f+EF+
  KOO24738.1 448 LTVAR----------------------LTEIFAQVnaqaddegEKDDDGdELNFSEFK 483
                 33333......................3333333333333333344443366666665 PP

>> EF-hand_6  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.9   0.0   6.8e-05      0.17       5      25 ..     231     251 ..     227     256 .. 0.89
   2 !   12.7   0.0   3.5e-05     0.091       2      27 ..     264     289 ..     263     293 .. 0.85
   3 ?   -0.1   0.0      0.46   1.2e+03      11      25 ..     470     485 ..     470     489 .. 0.81

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 6.8e-05
   EF-hand_6   5 aFklfDkdgdGkidaeElrka 25 
                 +Fk+ D dg+G ++++E+ ++
  KOO24738.1 231 LFKKADLDGSGAVSTSEVEQM 251
                 8*****************886 PP

  == domain 2  score: 12.7 bits;  conditional E-value: 3.5e-05
   EF-hand_6   2 lreaFklfDkdgdGkidaeElrkalr 27 
                 l+++  + D dg+G++d+eE++++l 
  KOO24738.1 264 LKKLIAEADADGSGELDFEEIVNVLM 289
                 56666778***************996 PP

  == domain 3  score: -0.1 bits;  conditional E-value: 0.46
   EF-hand_6  11 kdgdG.kidaeElrka 25 
                 kd+dG +++++E++ +
  KOO24738.1 470 KDDDGdELNFSEFKMM 485
                 5778889******875 PP

>> EF-hand_8  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.4   0.0   0.00035      0.89      28      48 ..     228     248 ..     225     255 .. 0.81
   2 !   11.5   0.0     8e-05       0.2      18      51 ..     256     287 ..     248     289 .. 0.82

  Alignments for each domain:
  == domain 1  score: 9.4 bits;  conditional E-value: 0.00035
   EF-hand_8  28 vdilfrefDtdgdGkisfeEF 48 
                 ++ lf+++D+dg+G++s  E 
  KOO24738.1 228 LEPLFKKADLDGSGAVSTSEV 248
                 5669************98775 PP

  == domain 2  score: 11.5 bits;  conditional E-value: 8e-05
   EF-hand_8  18 glkkglseeevdilfrefDtdgdGkisfeEFcvl 51 
                 ++  ++ + e+  l+ e+D dg+G ++feE +++
  KOO24738.1 256 KI--DIKPAELKKLIAEADADGSGELDFEEIVNV 287
                 33..388999999*****************9986 PP

>> TerB  Tellurite resistance protein TerB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.1   5.1e-05      0.13      42     100 ..     241     297 ..     233     327 .. 0.88

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 5.1e-05
        TerB  42 gqvsesErqafrellksrfglspeeakallelfeeaeeeavdleqftralkrklspeqr 100
                 g vs sE+++++  l  + +++p+e+k+l++++++  + + d+e++++ l +k ++e++
  KOO24738.1 241 GAVSTSEVEQMAVKL--KIDIKPAELKKLIAEADADGSGELDFEEIVNVLMAKSREEKK 297
                 789999999999888..99*********************************9775543 PP

>> EF-hand_4  Cytoskeletal-regulatory complex EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.0      0.62   1.6e+03      43      73 ..     226     257 ..     222     262 .. 0.74
   2 ?    9.4   0.0   0.00038      0.96      39      66 ..     258     285 ..     239     292 .. 0.79
   3 ?   -0.9   0.5       0.6   1.5e+03      54      67 ..     470     484 ..     408     489 .. 0.73

  Alignments for each domain:
  == domain 1  score: -0.9 bits;  conditional E-value: 0.62
   EF-hand_4  43 dklekiwdladidedgkldfeef.ciamrlif 73 
                 +kle +++ ad+d  g +   e   +a++l  
  KOO24738.1 226 EKLEPLFKKADLDGSGAVSTSEVeQMAVKLKI 257
                 6899999*******999877665234555555 PP

  == domain 2  score: 9.4 bits;  conditional E-value: 0.00038
   EF-hand_4  39 kleedklekiwdladidedgkldfeefc 66 
                  ++  +l+k+   ad d  g+ldfee +
  KOO24738.1 258 DIKPAELKKLIAEADADGSGELDFEEIV 285
                 56778999******************87 PP

  == domain 3  score: -0.9 bits;  conditional E-value: 0.6
   EF-hand_4  54 idedg.kldfeefci 67 
                  d+dg +l+f ef +
  KOO24738.1 470 KDDDGdELNFSEFKM 484
                 345542688888865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (539 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       616  (0.0343577); expected 358.6 (0.02)
Passed bias filter:                      519  (0.0289475); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.58u 0.22s 00:00:00.80 Elapsed: 00:00:00.39
# Mc/sec: 4154.87
//
Query:       KOO24739.1  [L=519]
Description: hypothetical protein Ctob_009125 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.2e-05   25.4   0.0    0.00024   21.1   0.0    2.2  2  CIA30     Complex I intermediate-associated protein 30 (CIA30


Domain annotation for each model (and alignments):
>> CIA30  Complex I intermediate-associated protein 30 (CIA30)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.1   0.0   1.4e-08   0.00024       3      77 ..      21      96 ..      19      99 .. 0.85
   2 ?    1.8   0.0     0.012   2.1e+02      95     125 ..     434     464 ..     423     477 .. 0.81

  Alignments for each domain:
  == domain 1  score: 21.1 bits;  conditional E-value: 1.4e-08
       CIA30  3 Fkspe..sldkwtllsDrvmGGvStaslklskkdktalFsGnlstel.inrgGFasvrtkkrkrkldlssyegleLrv 77
                Fk ++   ++ w+  +D vmGG S +++ +  +++++ F+G+  +   ++  GF++    ++ + +d+s++egl+++ 
  KOO24739.1 21 FKGSDpkLTHTWKPNNDPVMGGQSYSTVVV--QNEVLNFTGKCAIVPsLQAPGFITAVNSDKAPWVDVSGCEGLKITS 96
                55544326778*******************..689*******9998889******99887888889*******99875 PP

  == domain 2  score: 1.8 bits;  conditional E-value: 0.012
       CIA30  95 qsglsyqadfetkkgewetvkipfsdfvptf 125
                  s l y+adf+ + ++  +v +pf++f+  +
  KOO24739.1 434 LSLLCYKADFHPPLNTMGSVYVPFNNFTDFW 464
                 56678******99999*********998654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (519 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       672  (0.0374812); expected 358.6 (0.02)
Passed bias filter:                      504  (0.0281109); expected 358.6 (0.02)
Passed Vit filter:                        51  (0.00284455); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.56u 0.27s 00:00:00.83 Elapsed: 00:00:00.43
# Mc/sec: 3619.49
//
Query:       KOO24740.1  [L=552]
Description: hypothetical protein Ctob_009122 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.1e-07   29.0   0.1    8.4e-07   28.5   0.1    1.1  1  Zip       ZIP Zinc transporter
     0.0013   17.8   0.5     0.0018   17.3   0.5    1.2  1  MFS_1     Major Facilitator Superfamily
     0.0021   18.0   0.0      0.034   14.2   0.0    2.8  2  NHL       NHL repeat
  ------ inclusion threshold ------
      0.069   12.9   0.2       0.11   12.2   0.2    1.2  1  HlyIII    Haemolysin-III related
        0.2   11.3   0.2       0.31   10.7   0.2    1.2  1  NEMP      NEMP family


Domain annotation for each model (and alignments):
>> Zip  ZIP Zinc transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.5   0.1   2.3e-10   8.4e-07       8      98 ..      10      98 ..       8     144 .. 0.71

  Alignments for each domain:
  == domain 1  score: 28.5 bits;  conditional E-value: 2.3e-10
         Zip  8 iiaililsllgllgpllvpkiskl..lsklllslllafavGvllgtaflhLlPealealeesqleeehthplagllvllGflllllveklltm 98
                i a++ ls++++++   +  + ++  +  ++ s+l  + +G+l+g a+l++lPea+ +l+e   ++      + ++++++  +++++e+++  
  KOO24740.1 10 ISAMVPLSIAVGVITTSFGIWFSRqkHRPYRGSVLGTLTAGILVGIALLSMLPEAIDQLKECGWHT----STVIFMCIGAGGFIFFLENVVLP 98
                556666677777777666666666678899999****************************88776....67777777778888888888754 PP

>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   0.5   4.9e-07    0.0018      91     186 ..      12     106 ..       2     168 .. 0.81

  Alignments for each domain:
  == domain 1  score: 17.3 bits;  conditional E-value: 4.9e-07
       MFS_1  91 lrvlqGlgagalfpagaaliadwfpkeergraigllsagfslGailgpllggllasslg..Wravfyilaivsllafvlfllllpeepperkrkspke 186
                 + v  +++ g+++++ ++++++  +++ rg+++g l+ag+ +G++l  +l  ++ ++    W+ + +i+  +++ +f+   ++l     +++  ++ +
  KOO24740.1  12 AMVPLSIAVGVITTSFGIWFSRQKHRPYRGSVLGTLTAGILVGIALLSMLPEAIDQLKEcgWHTSTVIFMCIGAGGFI---FFLENVVLPHEHITSGR 106
                 5566789999********************************************9443355***************99...67644444444444433 PP

>> NHL  NHL repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.2   0.0   9.5e-06     0.034       1      25 [.     401     426 ..     401     427 .. 0.92
   2 ?    0.1   0.0      0.28     1e+03      16      28 .]     534     546 ..     532     546 .. 0.91

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 9.5e-06
                 BSSEEEEEEE.TTTEEEEEECCCTEE CS
         NHL   1 fnyPhGvavd.snGdiyVaDsenhrv 25 
                 f +Ph++a+   +G ++VaD+e  ++
  KOO24740.1 401 FHNPHSIALHaRSGLLLVADREDAQL 426
                 789******************98776 PP

  == domain 2  score: 0.1 bits;  conditional E-value: 0.28
                 EEEECCCTEEEEE CS
         NHL  16 yVaDsenhrvqvF 28 
                 +VaD  +++v  F
  KOO24740.1 534 LVADVPHSTVLRF 546
                 7********9987 PP

>> HlyIII  Haemolysin-III related
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.2     3e-05      0.11     115     192 ..      16      91 ..       5     102 .. 0.78

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 3e-05
      HlyIII 115 lalgvlgiisklvplfsrpearplravlfillgllgvipllhlllvltqlgeaa.elalvllvlggvlylvGavfYalr 192
                 l ++v  i +++  +fsr+++rp+r ++   l + g++  + ll +l+++   +  +   ++ ++++++ +Ga+ ++++
  KOO24740.1  16 LSIAVGVITTSFGIWFSRQKHRPYRGSVLGTL-TAGILVGIALLSMLPEAI--DqLKECGWHTSTVIFMCIGAGGFIFF 91 
                 4456667778888999***********99998.556666566588888655..335779**************988876 PP

>> NEMP  NEMP family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.2   8.6e-05      0.31      41     111 ..      17      90 ..      15     101 .. 0.82

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 8.6e-05
        NEMP  41 gmalGillsllivlfqlmkllpkkslfylllygswgvslyllqqlsenlksileey...rifvlvyvllvgvis 111
                 ++a+G++ +   + f  +k+ p + +++ +l +++ v++ ll +l e ++++ e     ++++++ +   g+i 
  KOO24740.1  17 SIAVGVITTSFGIWFSRQKHRPYRGSVLGTLTAGILVGIALLSMLPEAIDQLKECGwhtSTVIFMCIGAGGFIF 90 
                 79***********************************************9998877332333334444444554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (552 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       306  (0.0170673); expected 358.6 (0.02)
Passed bias filter:                      256  (0.0142785); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.52u 0.23s 00:00:00.75 Elapsed: 00:00:00.40
# Mc/sec: 4101.97
//
Query:       KOO24741.1  [L=135]
Description: methionine sulfoxide reductase b [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    8.1e-38  129.2   1.4      1e-37  128.9   1.4    1.0  1  SelR            SelR domain
  ------ inclusion threshold ------
      0.023   14.4   0.9        0.3   10.8   0.1    2.3  2  zinc_ribbon_10  Predicted integral membrane zinc-ribbon metal
      0.082   13.1   1.6        0.2   11.9   1.6    1.7  1  Yippee-Mis18    Yippee zinc-binding/DNA-binding /Mis18, centr
       0.11   12.6   0.3       0.11   12.6   0.3    2.4  3  zf-Mss51        Zinc-finger of mitochondrial splicing suppres
        1.1    8.8   7.1         12    5.5   0.2    3.6  4  zf-ribbon_3     zinc-ribbon domain
        1.3    9.2   7.4        0.2   11.9   2.3    2.2  2  Ribosomal_L37e  Ribosomal protein L37e
        1.7    8.9   4.1        8.9    6.7   2.7    2.3  2  DUF2757         Protein of unknown function (DUF2757)


Domain annotation for each model (and alignments):
>> SelR  SelR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  128.9   1.4   3.9e-41     1e-37       5     120 ..       6     120 ..       3     121 .. 0.96

  Alignments for each domain:
  == domain 1  score: 128.9 bits;  conditional E-value: 3.9e-41
                 TSHCCHHHHHHHTT-SSTTSSSTSS--.SSCEEEETTTS-EEEECCCCE-STTSSSEESS-STTTTEEEEEEECTTSEEEEEEETTCECEEEEEECTSS CS
        SelR   5 kLtpeqyevlrekgterpftgeyekek.ekGvyecavcgepLfssetkfdsgcGwpsFaeaikeeavkekkdtslgmertevvcakcdahlGhvFedgp 102
                  Lt+ + +vl++kgte++ tg+ye ++ ++G+++c+ cg+p++s+++kf+sgcGwp+F +++++ av+++ +t+ g+er+e+vca+c++hlGh+F  + 
  KOO24741.1   6 ALTDAEKYVLEQKGTEAAGTGTYEGFFpTDGYFACRKCGAPIYSAKSKFESGCGWPAFDKCYEG-AVEHRVETD-GTERIEIVCAHCKGHLGHIFMGEA 102
                 7999********************987589*********************************9.9**999999.************************ PP

                 SSS.SEEEEE-CCCEEEE CS
        SelR 103 kpttgkrycinsvslkfk 120
                 k+ tg+r+c ns +l+f+
  KOO24741.1 103 KTATGERHCANSRALQFV 120
                 *****************7 PP

>> zinc_ribbon_10  Predicted integral membrane zinc-ribbon metal-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.2   0.1     0.058   1.5e+02      44      52 ..      37      45 ..      25      47 .. 0.78
   2 ?   10.8   0.1   0.00012       0.3      18      36 ..      80      98 ..      69     118 .. 0.77

  Alignments for each domain:
  == domain 1  score: 2.2 bits;  conditional E-value: 0.058
  zinc_ribbon_10 44 kyrCpkCga 52
                     + C kCga
      KOO24741.1 37 YFACRKCGA 45
                    599****97 PP

  == domain 2  score: 10.8 bits;  conditional E-value: 0.00012
  zinc_ribbon_10 18 knryalICskChshnGlap 36
                    ++r  ++C +C+ h G   
      KOO24741.1 80 TERIEIVCAHCKGHLGHIF 98
                    7899**********99775 PP

>> Yippee-Mis18  Yippee zinc-binding/DNA-binding /Mis18, centromere assembly
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   1.6   7.6e-05       0.2       2      84 ..      37     111 ..      36     130 .. 0.69

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 7.6e-05
                   EEEETTTS-EEEECCCEEEEECC...CEEEES---CCCEEEECEEEETTSTTEEEEEEEETTT--EEEEEEEECSCCCCCCCTCEE CS
  Yippee-Mis18   2 vfqCkkCktilgdslqlvsegra...lnivvlkkvtrnvvvgkelvtdeegkctystlsCkgCnsvlGwkYksteeelkykrglfi 84 
                   +f C+kC +++  + + +++g      +  +  +v+++v ++ +  ++         + C++C+ +lG ++    +  +  r  ++
    KOO24741.1  37 YFACRKCGAPIYSAKSKFESGCGwpaFDKCYEGAVEHRVETDGTERIE---------IVCAHCKGHLGHIFMGEAKTATGER--HC 111
                   688999999888777777744443335556666788888888888888.........************9987666554444..45 PP

>> zf-Mss51  Zinc-finger of mitochondrial splicing suppressor 51
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.3   4.3e-05      0.11      16      34 ..      37      55 ..      16      59 .. 0.87
   2 ?   -0.5   0.0      0.53   1.4e+03      21      27 ..      57      63 ..      51      86 .. 0.83
   3 ?   -0.8   0.3      0.65   1.7e+03      18      22 ..      86      90 ..      72     115 .. 0.72

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 4.3e-05
    zf-Mss51 16 dfeCpdCGiptycseehwe 34
                 f C +CG p+y  + ++e
  KOO24741.1 37 YFACRKCGAPIYSAKSKFE 55
                699**********999887 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 0.53
    zf-Mss51 21 dCGipty 27
                 CG+p +
  KOO24741.1 57 GCGWPAF 63
                5999974 PP

  == domain 3  score: -0.8 bits;  conditional E-value: 0.65
    zf-Mss51 18 eCpdC 22
                 C +C
  KOO24741.1 86 VCAHC 90
                55555 PP

>> zf-ribbon_3  zinc-ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.5   0.2    0.0046        12      18      26 .]      39      47 ..      33      47 .. 0.82
   2 ?   -1.3   0.1      0.63   1.6e+03       8      11 ..      58      61 ..      56      64 .. 0.78
   3 ?    4.7   0.1    0.0081        21      17      24 ..      85      92 ..      83      94 .. 0.82
   4 ?    0.1   0.0      0.23   5.8e+02      11      21 ..     103     113 ..     100     113 .. 0.75

  Alignments for each domain:
  == domain 1  score: 5.5 bits;  conditional E-value: 0.0046
  zf-ribbon_3 18 vCpyCGtkl 26
                 +C +CG+++
   KOO24741.1 39 ACRKCGAPI 47
                 699999886 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 0.63
  zf-ribbon_3  8 CGap 11
                 CG+p
   KOO24741.1 58 CGWP 61
                 9998 PP

  == domain 3  score: 4.7 bits;  conditional E-value: 0.0081
  zf-ribbon_3 17 nvCpyCGt 24
                 +vC++C +
   KOO24741.1 85 IVCAHCKG 92
                 79****76 PP

  == domain 4  score: 0.1 bits;  conditional E-value: 0.23
  zf-ribbon_3  11 plssddnvCpy 21 
                  + +++ ++C++
   KOO24741.1 103 KTATGERHCAN 113
                  66789999987 PP

>> Ribosomal_L37e  Ribosomal protein L37e
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   2.3   7.8e-05       0.2      15      41 ..      36      62 ..      17      66 .. 0.83
   2 ?   -1.0   0.2      0.82   2.1e+03      17      22 ..      85      90 ..      79      97 .. 0.71

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 7.8e-05
  Ribosomal_L37e 15 tHilCrrCgkrsyhvqkktCascGyps 41
                     +  Cr+Cg   y  + k  + cG+p+
      KOO24741.1 36 GYFACRKCGAPIYSAKSKFESGCGWPA 62
                    5789*********************96 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 0.82
  Ribosomal_L37e 17 ilCrrC 22
                    i+C +C
      KOO24741.1 85 IVCAHC 90
                    677777 PP

>> DUF2757  Protein of unknown function (DUF2757)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.7   2.7    0.0035       8.9       5      62 ..      38      94 ..      36      97 .. 0.68
   2 ?    5.6   0.6    0.0076        20       3      23 ..      83     103 ..      81     127 .. 0.77

  Alignments for each domain:
  == domain 1  score: 6.7 bits;  conditional E-value: 0.0035
                EEETTT--BTT-SSTTT---SS---SSSSHHHHHHT.SSS-TT-S-EEEE--HHHHHHH CS
     DUF2757  5 YrCrhCgkkigtlekkeieeealgfnkLteeerqdm.ieyeengdikvkviCedCqeal 62
                + Cr+Cg+ i + ++ + e+   g   +++     +  ++e++g  +++++C +C+ +l
  KOO24741.1 38 FACRKCGAPIYSAKS-KFES-GCGWPAFDKCYEGAVeHRVETDGTERIEIVCAHCKGHL 94
                679999999988775.4444.366666665443333134678899999*******9877 PP

  == domain 2  score: 5.6 bits;  conditional E-value: 0.0076
                 -EEEETTT--BTT-SSTTT-- CS
     DUF2757   3 ihYrCrhCgkkigtlekkeie 23 
                 i+  C hC+ ++g++   e++
  KOO24741.1  83 IEIVCAHCKGHLGHIFMGEAK 103
                 556799999999999876655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (135 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       457  (0.0254894); expected 358.6 (0.02)
Passed bias filter:                      323  (0.0180155); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.38u 0.23s 00:00:00.61 Elapsed: 00:00:00.39
# Mc/sec: 1028.60
//
Query:       KOO24742.1  [L=224]
Description: hypothetical protein Ctob_009120 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.2e-26   91.1   0.0    5.5e-25   88.0   0.0    1.9  1  SPC25     Microsomal signal peptidase 25 kDa subunit (SPC25)


Domain annotation for each model (and alignments):
>> SPC25  Microsomal signal peptidase 25 kDa subunit (SPC25)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   88.0   0.0     3e-29   5.5e-25       2     161 ..      23     206 ..      22     207 .. 0.85

  Alignments for each domain:
  == domain 1  score: 88.0 bits;  conditional E-value: 3e-29
       SPC25   2 lKntlDdalkeyltdlg........fkeshtltdvrLalGylavaiaavaflydykveFeeskpvlaiavvlYfilsgiltlystfvekntifvgkrkt 92 
                 +K+ lDda++e+l d++        f+e++ +++++L++G++av  ++ +++++   +F+ +   l++++  Yf+ sg+l+l   fve + i+  +r++
  KOO24742.1  23 IKRMLDDAVVEVLLDSEddsglhtmFVEDTSMSNMKLFVGFSAVGASLPSHVFPA--PFPHNWWCLLFCCTYYFAASGVLQLLLSFVELESILLLTRRK 119
                 79************99556778899*****************************9..*******************************99999999999 PP

       SPC25  93 gskrie..kitissslkklsptytltvsykdksnkgkslkak.................eleksvgewFdedGylveeefeqwlakll 161
                 ++ +++   + is+++++++ tytl ++         sl++                  + +++v+++Fde+G+++ee f + +a++l
  KOO24742.1 120 DAPKVPvpGLNISTHFPRFQSTYTLGITPIPGGAI-TSLAKApafqpeveggntskhsmQRSWKVEHYFDEEGVFAEEDFMKSVADFL 206
                 9888999*************666666665444433.222222355555555555555567789*******************999865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (224 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       411  (0.0229238); expected 358.6 (0.02)
Passed bias filter:                      366  (0.0204139); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.26s 00:00:00.69 Elapsed: 00:00:00.43
# Mc/sec: 1552.65
//
Query:       KOO24743.1  [L=143]
Description: hypothetical protein Ctob_009121 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    0.00021   21.9   0.0    0.00035   21.2   0.0    1.4  1  Methyltransf_11  Methyltransferase domain
  ------ inclusion threshold ------
      0.015   15.1   0.0      0.017   14.9   0.0    1.2  1  Methyltransf_31  Methyltransferase domain
      0.073   13.8   0.0       0.13   12.9   0.0    1.5  1  Methyltransf_25  Methyltransferase domain


Domain annotation for each model (and alignments):
>> Methyltransf_11  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.2   0.0   5.8e-08   0.00035      58      95 ..       3      43 ..       1      44 [. 0.92

  Alignments for each domain:
  == domain 1  score: 21.2 bits;  conditional E-value: 5.8e-08
                     -TT-EEEEEEES-CCC-...CCHHHHHHHHHHHEEEEEEEE CS
  Methyltransf_11 58 ednsfDlvvssevlhhv...edpekalkeiaRvLkpgGllv 95
                     + +sfD+v+ + +++ v    ++ ++++e++R L+pgG+ v
       KOO24743.1  3 QHASFDAVLDTGTFDKVgasGNLGRFIEEAWRALRPGGMYV 43
                     679**************98879****************987 PP

>> Methyltransf_31  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.9   0.0   2.9e-06     0.017      71     115 ..       3      52 ..       1     101 [. 0.84

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 2.9e-06
  Methyltransf_31  71 edekfDlilsnevl...naladpdkileeiervlkpggilliedpr..ll 115
                      + ++fD +l+ +++    a  ++  ++ee+ r+l+pgg +++ + +  ++
       KOO24743.1   3 QHASFDAVLDTGTFdkvGASGNLGRFIEEAWRALRPGGMYVMISSSerAA 52 
                      4589*******99988888999999*****************99994433 PP

>> Methyltransf_25  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   2.2e-05      0.13      62      97 .]       4      40 ..       1      40 [. 0.85

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 2.2e-05
                     TTTEEEEEEESTGGG.SSHHHHHHHHHHHHHHEEEEE CS
  Methyltransf_25 62 dgsfDlvvssgalhh.lsdedlekalkeiarvLkpgG 97
                     ++sfD+v+ +g++       +l ++++e++r+L+pgG
       KOO24743.1  4 HASFDAVLDTGTFDKvGASGNLGRFIEEAWRALRPGG 40
                     689******9889883456799**************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (143 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       240  (0.0133861); expected 358.6 (0.02)
Passed bias filter:                      222  (0.0123822); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.38u 0.24s 00:00:00.62 Elapsed: 00:00:00.40
# Mc/sec: 1081.26
//
Query:       KOO24744.1  [L=247]
Description: tRNA rRNA methyltransferase family protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.6e-24   86.7   0.0    1.4e-23   83.7   0.0    1.9  2  SpoU_methylase  SpoU rRNA Methylase family


Domain annotation for each model (and alignments):
>> SpoU_methylase  SpoU rRNA Methylase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   83.7   0.0   7.6e-28   1.4e-23       3     142 .]      17     154 ..      15     154 .. 0.88
   2 ?    0.8   0.0     0.028     5e+02       9      46 ..     178     215 ..     177     233 .. 0.87

  Alignments for each domain:
  == domain 1  score: 83.7 bits;  conditional E-value: 7.6e-28
                     EEEEES-SSHHHHHHHHHHHHHTT-SEEEEESGSSCTCGSHHHHHHCTTHHHHHHEEEESSHHHHHHHHCCC.TEEEEEEST..T-SEGCCSHHH CS
  SpoU_methylase   3 ivvlveiedpgNlGaiaRtakafgaselvlvkprsadllnpeakraaagalevlelkvvdsleealkelkee.gfalvatsl..kgkslseidlk 94 
                     i+vl ++++++N+G ++Rta+a+g+ e+++v+ ++    n      ++g+  ++++ ++d +++a++ ++ + g +l++++   ++ ++++  ++
      KOO24744.1  17 ILVLHNVSKKKNFGELIRTAAALGVCEIIIVGAQKL---N---SFGSHGTCGHMRFSHFDRFADAVAYVRSVrGARLCGVEItaDAAPVQTHPFS 105
                     79****************************994443...3...34578888899999999999999999998779998887766888999***** PP

                     TTEEEEEEBTTTBS-HHHHCTSSEEEE---.-TTSSS--HHHHHHHHHH CS
  SpoU_methylase  95 ekvalvfGnEdkGlsnelleladrlvkIpm.sgeveSLNvavAvailly 142
                     + +a+++GnE++Gl++  l+++d++v+Ip+ s  + SLNv  A+a++l+
      KOO24744.1 106 GTTAFLMGNEGHGLTPPQLAACDHFVYIPQhSDATASLNVNAACAVVLH 154
                     ******************************555569**********985 PP

  == domain 2  score: 0.8 bits;  conditional E-value: 0.028
                     -SSHHHHHHHHHHHHHTT-SEEEEESGSSCTCGSHHHH CS
  SpoU_methylase   9 iedpgNlGaiaRtakafgaselvlvkprsadllnpeak 46 
                     +++  N G+ +  +k++ a++ v+ ++r+ +++++ea+
      KOO24744.1 178 PSSTPNSGMGLKQMKTLAADGSVVPRRRGPSVDEEEAQ 215
                     5677899*****************99999988888875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (247 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       408  (0.0227564); expected 358.6 (0.02)
Passed bias filter:                      343  (0.019131); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.24s 00:00:00.63 Elapsed: 00:00:00.37
# Mc/sec: 1977.61
//
Query:       KOO24745.1  [L=392]
Description: hypothetical protein Ctob_011252, partial [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.4e-06   28.4  58.9      0.057   13.3  11.6    4.7  5  CortBP2         Cortactin-binding protein-2
  ------ inclusion threshold ------
      0.019   15.5  10.6         24    5.5   0.0    6.4  9  Csd3_N          Csd3 N-terminal
      0.036   14.6  66.2       0.77   10.3  13.4    4.6  3  APG6_N          Apg6 coiled-coil region
      0.089   12.6  19.9        4.5    7.0   0.3    6.3  6  MCPVI           Minor capsid protein VI
       0.61   10.4  38.5        3.9    7.8   1.0    8.9  9  TetR_C_24       Tetracyclin repressor-like, C-terminal domain
        4.8    7.7  60.8        2.1    8.9   1.8    9.0 13  EspB_PE         ESX-1 secreted protein B PE domain


Domain annotation for each model (and alignments):
>> CortBP2  Cortactin-binding protein-2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.3  11.6   1.9e-05     0.057      87     178 ..      10     100 ..       6     106 .. 0.91
   2 !   10.5   7.2   0.00014      0.43     101     178 ..     107     184 ..      99     190 .. 0.93
   3 !    7.2  13.3    0.0014       4.3      81     176 ..     172     266 ..     159     274 .. 0.67
   4 !   10.0  12.5   0.00021      0.61      81     178 ..     256     352 ..     242     358 .. 0.78
   5 !    8.6   2.6   0.00054       1.6     102     173 ..     318     389 ..     317     391 .. 0.95

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 1.9e-05
     CortBP2  87 ekliekqreaqermleqLaaaekrhrkvleeLeeekrkheedtaqgddvtylLekererLkqeleqekaqkkklekelkkllekleeerkkq 178
                 ekl ++q e+ e ++ +L+a+ k h+++  e +eek kh  +++ + ++ +  ++e+ +L   ++ + +++++ ++e++kl+++++   + +
  KOO24745.1  10 EKLATTQAECDEETR-KLVASVKAHAETQVECDEEKAKHVASVKAHAETQVECDEEKAKLAASVKAHAETHAECDEEKAKLVASVKAHAETH 100
                 688888888888876.57777899************************************************************99887765 PP

  == domain 2  score: 10.5 bits;  conditional E-value: 0.00014
     CortBP2 101 leqLaaaekrhrkvleeLeeekrkheedtaqgddvtylLekererLkqeleqekaqkkklekelkkllekleeerkkq 178
                 +++L+a+ k h+++ +e +eek k + +++ + ++ +  ++e  +L   ++ + +++++ ++e++kl+++++   + +
  KOO24745.1 107 KAKLVASVKAHAETHAECNEEKAKLAASVKVHTETQVTCDEETAKLVASVKAHAETHAECDEEKAKLVASVKAHAETH 184
                 57899999**************************************************************99887765 PP

  == domain 3  score: 7.2 bits;  conditional E-value: 0.0014
     CortBP2  81 kqlaeLekliekqreaqermleqLaaaekrhrkvleeLeeekrkheedtaqgddvtylLekererLkqeleqekaqkkklekelkkllekleeerk 176
                 k +a+ ++  e++ e+ e  +++Laa+ k h+++ +e +ee rk   +++ + ++ +  ++e+ +L   ++ + +++   ++e +kl+++++   +
  KOO24745.1 172 KLVASVKAHAETHAECDEE-KAKLAASVKAHAETHAECDEETRKLVASVKAHAETQVKCDEEKAKLAASVKAHAETQVTCHEETRKLVASVKAHAE 266
                 3334444444444444433.5668888888888888888888888888888888888888888888888888888888888888888888777665 PP

  == domain 4  score: 10.0 bits;  conditional E-value: 0.00021
     CortBP2  81 kqlaeLekliekqreaqermleqLaaaekrhrkvleeLeeekrkheedtaqgddvtylLekererLkqeleqekaqkkklekelkkllekleeerkkq 178
                 k +a+ ++  e++ e+ e  +++L+a+ k h+++ +e +eek k + +++ + ++    ++e+ +L   ++ + +++++ ++e +kl+++++   + +
  KOO24745.1 256 KLVASVKAHAETHAECDEE-KAKLVASVKAHAETHAECDEEKAKLAASVKAHAETHAECDEEKAKLAASVKAHAETHAECDEETRKLVASVKAHAETH 352
                 5555555555666666554.567888999999999999999999999999999999999999999999999999999999999999999999877765 PP

  == domain 5  score: 8.6 bits;  conditional E-value: 0.00054
     CortBP2 102 eqLaaaekrhrkvleeLeeekrkheedtaqgddvtylLekererLkqeleqekaqkkklekelkklleklee 173
                 ++Laa+ k h+++ +e +ee rk   +++ + ++    + e  +L   ++ + +++   ++e++kl+++++ 
  KOO24745.1 318 AKLAASVKAHAETHAECDEETRKLVASVKAHAETHAECDVETRKLVASVKAHAETQVAYDEEKAKLVASVKA 389
                 6799999***********************************************************999875 PP

>> Csd3_N  Csd3 N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.8   0.1      0.12   3.5e+02      27      68 ..      19      60 ..      12      72 .. 0.78
   2 ?   -0.3   0.0      0.53   1.6e+03      25      50 ..      59      84 ..      43      99 .. 0.68
   3 ?    4.2   0.1     0.021        62      21      68 ..      97     144 ..      76     153 .. 0.83
   4 ?    0.3   0.0      0.35     1e+03      22      50 ..     161     189 ..     146     205 .. 0.67
   5 ?    5.5   0.0    0.0081        24      22      72 ..     203     253 ..     195     261 .. 0.86
   6 ?   -0.0   0.0      0.43   1.3e+03      22      50 ..     266     294 ..     253     308 .. 0.70
   7 ?    0.5   0.0      0.29   8.8e+02      22      49 ..     287     314 ..     267     331 .. 0.63
   8 ?   -0.0   0.0      0.43   1.3e+03      23      51 ..     309     337 ..     300     351 .. 0.67
   9 ?    1.0   0.0      0.21   6.2e+02      22      51 ..     350     379 ..     343     387 .. 0.81

  Alignments for each domain:
  == domain 1  score: 1.8 bits;  conditional E-value: 0.12
      Csd3_N 27 ldeedkellseiragvkyyelrddkgellqalipvneelQih 68
                 dee ++l++ ++a ++ ++  d++     a +   +e+Q+ 
  KOO24745.1 19 CDEETRKLVASVKAHAETQVECDEEKAKHVASVKAHAETQVE 60
                688999999999999999999997776666677777777775 PP

  == domain 2  score: -0.3 bits;  conditional E-value: 0.53
      Csd3_N 25 ynldeedkellseiragvkyyelrdd 50
                 + dee  +l++ ++a ++ +   d+
  KOO24745.1 59 VECDEEKAKLAASVKAHAETHAECDE 84
                56677778888888887766555443 PP

  == domain 3  score: 4.2 bits;  conditional E-value: 0.021
      Csd3_N  21 eklyynldeedkellseiragvkyyelrddkgellqalipvneelQih 68 
                 +++  + dee  +l++ ++a ++ +   +++   l a + v  e+Q+ 
  KOO24745.1  97 AETHAECDEEKAKLVASVKAHAETHAECNEEKAKLAASVKVHTETQVT 144
                 567778899999999999999999888888888888999999999986 PP

  == domain 4  score: 0.3 bits;  conditional E-value: 0.35
      Csd3_N  22 klyynldeedkellseiragvkyyelrdd 50 
                 ++  + dee  +l++ ++a ++ +   d+
  KOO24745.1 161 ETHAECDEEKAKLVASVKAHAETHAECDE 189
                 55666677777788888777766555553 PP

  == domain 5  score: 5.5 bits;  conditional E-value: 0.0081
      Csd3_N  22 klyynldeedkellseiragvkyyelrddkgellqalipvneelQihifkd 72 
                 ++  + dee ++l++ ++a ++ ++  d++   l a +   +e+Q+  +++
  KOO24745.1 203 ETHAECDEETRKLVASVKAHAETQVKCDEEKAKLAASVKAHAETQVTCHEE 253
                 66778899*******************999999999999999999987665 PP

  == domain 6  score: -0.0 bits;  conditional E-value: 0.43
      Csd3_N  22 klyynldeedkellseiragvkyyelrdd 50 
                 ++  + dee  +l++ ++a ++ +   d+
  KOO24745.1 266 ETHAECDEEKAKLVASVKAHAETHAECDE 294
                 55667778888888888888776655554 PP

  == domain 7  score: 0.5 bits;  conditional E-value: 0.29
      Csd3_N  22 klyynldeedkellseiragvkyyelrd 49 
                 ++  + dee  +l++ ++a ++ +   d
  KOO24745.1 287 ETHAECDEEKAKLAASVKAHAETHAECD 314
                 4455556666666666666665554444 PP

  == domain 8  score: -0.0 bits;  conditional E-value: 0.43
      Csd3_N  23 lyynldeedkellseiragvkyyelrddk 51 
                 +  + dee  +l++ ++a ++ +   d++
  KOO24745.1 309 THAECDEEKAKLAASVKAHAETHAECDEE 337
                 55666777778888888877766555543 PP

  == domain 9  score: 1.0 bits;  conditional E-value: 0.21
      Csd3_N  22 klyynldeedkellseiragvkyyelrddk 51 
                 ++  + d e ++l++ ++a ++ ++ +d++
  KOO24745.1 350 ETHAECDVETRKLVASVKAHAETQVAYDEE 379
                 56677889999***********99999965 PP

>> APG6_N  Apg6 coiled-coil region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.9  20.1     0.006        18      29     130 ..      24     139 ..       9     143 .. 0.77
   2 ?   10.3  13.4   0.00026      0.77      44     129 ..     155     243 ..     140     248 .. 0.88
   3 ?    6.3  17.3    0.0045        14      21     122 ..     268     362 ..     246     391 .. 0.59

  Alignments for each domain:
  == domain 1  score: 5.9 bits;  conditional E-value: 0.006
      APG6_N  29 eeflkklkkekkeeek..............qdeeleeleeeleklekeeeelleeLkelekereeleaelaaleeelealeeeeerfwreynelqlell 113
                 ++  + +k++++++ +              + e   e +ee +kl +  ++  e  +e ++e+++l a ++a +e++++ +ee+++ + + ++++ +++
  KOO24745.1  24 RKLVASVKAHAETQVEcdeekakhvasvkaHAETQVECDEEKAKLAASVKAHAETHAECDEEKAKLVASVKAHAETHAECDEEKAKLVASVKAHAETHA 122
                 33333444443332225555556666666677778899999********************************************************** PP

      APG6_N 114 eleeeldsleaqyehaq 130
                 e++ee+++l+a+++ ++
  KOO24745.1 123 ECNEEKAKLAASVKVHT 139
                 **********9998765 PP

  == domain 2  score: 10.3 bits;  conditional E-value: 0.00026
      APG6_N  44 k...qdeeleeleeeleklekeeeelleeLkelekereeleaelaaleeelealeeeeerfwreynelqlelleleeeldsleaqyeha 129
                 +   + e ++e +ee +kl +  ++  e  +e ++e+++l+a ++a +e++++ +ee ++ + + ++++ ++ +++ee+++l+a+++ +
  KOO24745.1 155 SvkaHAETHAECDEEKAKLVASVKAHAETHAECDEEKAKLAASVKAHAETHAECDEETRKLVASVKAHAETQVKCDEEKAKLAASVKAH 243
                 033367899*************************************************************************9998754 PP

  == domain 3  score: 6.3 bits;  conditional E-value: 0.0045
      APG6_N  21 aekerdaYeeflkklkkekkeeek..........qdeeleeleeeleklekeeeelleeLkelekereeleaelaaleeelealeeeeerfwreynelq 109
                   ++ +                 +          + e ++e +ee +kl +  ++  e  +e ++e+++l+a ++a +e++++ +ee ++ + + ++++
  KOO24745.1 268 HAECDE-----------------EkaklvasvkaHAETHAECDEEKAKLAASVKAHAETHAECDEEKAKLAASVKAHAETHAECDEETRKLVASVKAHA 349
                 111111.................0222233333345566666666666666666666666666666666666666666666666666666666666666 PP

      APG6_N 110 lelleleeeldsl 122
                  +++e++ e ++l
  KOO24745.1 350 ETHAECDVETRKL 362
                 6666666666555 PP

>> MCPVI  Minor capsid protein VI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.9   0.3    0.0069        21     108     157 ..      12      61 ..       6      76 .. 0.81
   2 ?    3.2   0.4     0.023        69     105     133 ..      93     121 ..      55     146 .. 0.57
   3 ?    3.1   0.2     0.024        72     106     146 ..     136     176 ..     127     196 .. 0.69
   4 ?    7.0   0.3    0.0015       4.5     105     156 ..     198     249 ..     186     265 .. 0.83
   5 ?    1.9   0.2     0.056   1.7e+02     106     145 ..     262     301 ..     253     340 .. 0.73
   6 ?    2.9   0.2     0.028        84     106     142 ..     346     382 ..     303     392 .] 0.68

  Alignments for each domain:
  == domain 1  score: 4.9 bits;  conditional E-value: 0.0069
                 XXXXXXXXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
       MCPVI 108 lGeerpatqeeleaLiaaldpkdeeavkqgeptvePiaPeaksvlvPvtl 157
                 l   +   +ee ++L+a+++++ e  v+  e+ ++ +a   + + + v+ 
  KOO24745.1  12 LATTQAECDEETRKLVASVKAHAETQVECDEEKAKHVASVKAHAETQVEC 61 
                 55667788999999******999999999999999998887777766665 PP

  == domain 2  score: 3.2 bits;  conditional E-value: 0.023
                 XXXXXXXXXXXXXX.XXXXXXXXXXXXXX CS
       MCPVI 105 rkalGeerpatqeeleaLiaaldpkdeea 133
                  ka  e +   +ee ++L+a+++++ e  
  KOO24745.1  93 VKAHAETHAECDEEKAKLVASVKAHAETH 121
                 34444445555555555555555555544 PP

  == domain 3  score: 3.1 bits;  conditional E-value: 0.024
                 XXXXXXXXXXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXX CS
       MCPVI 106 kalGeerpatqeeleaLiaaldpkdeeavkqgeptvePiaP 146
                 k+  e + + +ee ++L+a+++++ e   +  e+ ++ +a 
  KOO24745.1 136 KVHTETQVTCDEETAKLVASVKAHAETHAECDEEKAKLVAS 176
                 66667777778888888888888777766666665555444 PP

  == domain 4  score: 7.0 bits;  conditional E-value: 0.0015
                 XXXXXXXXXXXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
       MCPVI 105 rkalGeerpatqeeleaLiaaldpkdeeavkqgeptvePiaPeaksvlvPvt 156
                  ka  e +   +ee ++L+a+++++ e  vk  e+ ++ +a   + + + vt
  KOO24745.1 198 VKAHAETHAECDEETRKLVASVKAHAETQVKCDEEKAKLAASVKAHAETQVT 249
                 57788899999*********************99999988877766665555 PP

  == domain 5  score: 1.9 bits;  conditional E-value: 0.056
                 XXXXXXXXXXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXX CS
       MCPVI 106 kalGeerpatqeeleaLiaaldpkdeeavkqgeptvePia 145
                 ka  e +   +ee ++L+a+++++ e   +  e+ ++ +a
  KOO24745.1 262 KAHAETHAECDEEKAKLVASVKAHAETHAECDEEKAKLAA 301
                 6666777778888888888888887777666666555444 PP

  == domain 6  score: 2.9 bits;  conditional E-value: 0.028
                 XXXXXXXXXXXXX.XXXXXXXXXXXXXXXXXXXXXXX CS
       MCPVI 106 kalGeerpatqeeleaLiaaldpkdeeavkqgeptve 142
                 ka  e +   + e ++L+a+++++ e  v+  e+ ++
  KOO24745.1 346 KAHAETHAECDVETRKLVASVKAHAETQVAYDEEKAK 382
                 4555556666666666666666666666666665554 PP

>> TetR_C_24  Tetracyclin repressor-like, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.1       1.9   5.7e+03       6      21 ..      24      39 ..       7      51 .. 0.62
   2 ?    4.4   0.4     0.014        43       5      40 ..      65     100 ..      61     103 .. 0.79
   3 ?    2.2   0.1     0.068     2e+02       5      26 ..     107     128 ..     103     144 .. 0.81
   4 ?    2.7   0.1      0.05   1.5e+02       7      41 ..     130     164 ..     124     170 .. 0.53
   5 ?    4.0   0.3     0.019        57       4      40 ..     148     184 ..     145     189 .. 0.77
   6 ?    5.8   0.2    0.0053        16       5      35 ..     191     221 ..     187     228 .. 0.84
   7 ?    4.1   0.6     0.018        53       5      42 ..     233     270 ..     229     279 .. 0.82
   8 ?    2.1   0.1     0.074   2.2e+02       5      24 ..     296     315 ..     292     317 .. 0.86
   9 ?    7.8   1.0    0.0013       3.9       5      48 ..     317     360 ..     313     385 .. 0.84

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 1.9
                HHHHHHHHHHHHHHHH CS
   TetR_C_24  6 erLralvrahveviae 21
                 +L a v+ah+e+ +e
  KOO24745.1 24 RKLVASVKAHAETQVE 39
                3555555555555444 PP

  == domain 2  score: 4.4 bits;  conditional E-value: 0.014
                 HHHHHHHHHHHHHHHHHTHHHHHHHHHHGGGS-HHH CS
   TetR_C_24   5 aerLralvrahveviaeereeaavllrelraLspeh 40 
                 +++L+a v+ah+e++ae +ee a l+ +++a  + h
  KOO24745.1  65 KAKLAASVKAHAETHAECDEEKAKLVASVKAHAETH 100
                 689*************99998887777777666655 PP

  == domain 3  score: 2.2 bits;  conditional E-value: 0.068
                 HHHHHHHHHHHHHHHHHTHHHH CS
   TetR_C_24   5 aerLralvrahveviaeereea 26 
                 +++L a v+ah+e++ae +ee 
  KOO24745.1 107 KAKLVASVKAHAETHAECNEEK 128
                 689*************988765 PP

  == domain 4  score: 2.7 bits;  conditional E-value: 0.05
                 HHHHHHHHHHHHHHHTHHHHHHHHHHGGGS-HHHH CS
   TetR_C_24   7 rLralvrahveviaeereeaavllrelraLspehr 41 
                 +L+a v+ h+e+ ++ +ee+a l+ +++a  + h+
  KOO24745.1 130 KLAASVKVHTETQVTCDEETAKLVASVKAHAETHA 164
                 55555555555555555555555555444443333 PP

  == domain 5  score: 4.0 bits;  conditional E-value: 0.019
                 HHHHHHHHHHHHHHHHHHTHHHHHHHHHHGGGS-HHH CS
   TetR_C_24   4 paerLralvrahveviaeereeaavllrelraLspeh 40 
                  +++L a v+ah+e++ae +ee a l+ +++a  + h
  KOO24745.1 148 ETAKLVASVKAHAETHAECDEEKAKLVASVKAHAETH 184
                 5789999999999999999988877777777665555 PP

  == domain 6  score: 5.8 bits;  conditional E-value: 0.0053
                 HHHHHHHHHHHHHHHHHTHHHHHHHHHHGGG CS
   TetR_C_24   5 aerLralvrahveviaeereeaavllrelra 35 
                 +++L+a v+ah+e++ae +ee++ l+ +++a
  KOO24745.1 191 KAKLAASVKAHAETHAECDEETRKLVASVKA 221
                 78******************99988877766 PP

  == domain 7  score: 4.1 bits;  conditional E-value: 0.018
                 HHHHHHHHHHHHHHHHHTHHHHHHHHHHGGGS-HHHHH CS
   TetR_C_24   5 aerLralvrahveviaeereeaavllrelraLspehre 42 
                 +++L+a v+ah+e+ ++ +ee++ l+ +++a  + h+e
  KOO24745.1 233 KAKLAASVKAHAETQVTCHEETRKLVASVKAHAETHAE 270
                 68999**********99999999999998887666654 PP

  == domain 8  score: 2.1 bits;  conditional E-value: 0.074
                 HHHHHHHHHHHHHHHHHTHH CS
   TetR_C_24   5 aerLralvrahveviaeere 24 
                 +++L+a v+ah+e++ae +e
  KOO24745.1 296 KAKLAASVKAHAETHAECDE 315
                 78*************99765 PP

  == domain 9  score: 7.8 bits;  conditional E-value: 0.0013
                 HHHHHHHHHHHHHHHHHTHHHHHHHHHHGGGS-HHHHHHHHHHH CS
   TetR_C_24   5 aerLralvrahveviaeereeaavllrelraLspehreeiralr 48 
                 +++L+a v+ah+e++ae +ee++ l+ +++a  + h+e  ++ r
  KOO24745.1 317 KAKLAASVKAHAETHAECDEETRKLVASVKAHAETHAECDVETR 360
                 789**********************9999998887777555555 PP

>> EspB_PE  ESX-1 secreted protein B PE domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.1   0.4     0.021        62      43      76 ..      10      43 ..       6      44 .. 0.92
   2 ?    6.6   1.3    0.0035        10      42      76 ..      51      85 ..      48      86 .. 0.87
   3 ?    1.7   0.5      0.12   3.7e+02      37      76 ..      88     127 ..      86     128 .. 0.88
   4 ?    2.1   0.2     0.091   2.7e+02      36      63 ..     108     135 ..     103     139 .. 0.89
   5 ?    4.0   0.5     0.023        70      37      76 ..     130     169 ..     127     170 .. 0.92
   6 ?    8.7   1.7   0.00077       2.3      37      76 ..     172     211 ..     170     212 .. 0.94
   7 ?    5.4   0.6    0.0082        25      36      68 ..     213     245 ..     210     254 .. 0.91
   8 ?    6.6   1.2    0.0035        11      36      76 ..     234     274 ..     230     275 .. 0.95
   9 ?    5.7   0.7    0.0069        21      35      76 ..     254     295 ..     249     296 .. 0.92
  10 ?    8.9   1.8    0.0007       2.1      37      76 ..     277     316 ..     275     317 .. 0.94
  11 ?    8.7   2.9   0.00081       2.4      36      76 ..     297     337 ..     296     338 .. 0.95
  12 ?    3.1   0.7     0.044   1.3e+02      36      74 ..     318     356 ..     317     360 .. 0.86
  13 ?    0.8   0.3      0.23     7e+02      36      67 ..     360     391 ..     356     392 .] 0.88

  Alignments for each domain:
  == domain 1  score: 4.1 bits;  conditional E-value: 0.021
                HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC CS
     EspB_PE 43 ealrkylaageaErerLAesLrnaAkaYeevDea 76
                e+l++++a +++E ++L +s+++ A++  e De+
  KOO24745.1 10 EKLATTQAECDEETRKLVASVKAHAETQVECDEE 43
                789**********************999999987 PP

  == domain 2  score: 6.6 bits;  conditional E-value: 0.0035
                HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC CS
     EspB_PE 42 AealrkylaageaErerLAesLrnaAkaYeevDea 76
                 +a ++++  +++E+++LA+s+++ A++  e De+
  KOO24745.1 51 VKAHAETQVECDEEKAKLAASVKAHAETHAECDEE 85
                55667788889**********************98 PP

  == domain 3  score: 1.7 bits;  conditional E-value: 0.12
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC CS
     EspB_PE  37 qLnasAealrkylaageaErerLAesLrnaAkaYeevDea 76 
                 +L as +a +++ a +++E+++L +s+++ A++  e  e+
  KOO24745.1  88 KLVASVKAHAETHAECDEEKAKLVASVKAHAETHAECNEE 127
                 7899999999999***************999998887776 PP

  == domain 4  score: 2.1 bits;  conditional E-value: 0.091
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
     EspB_PE  36 eqLnasAealrkylaageaErerLAesL 63 
                 ++L as +a +++ a +++E+++LA+s+
  KOO24745.1 108 AKLVASVKAHAETHAECNEEKAKLAASV 135
                 579999999999999**********986 PP

  == domain 5  score: 4.0 bits;  conditional E-value: 0.023
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC CS
     EspB_PE  37 qLnasAealrkylaageaErerLAesLrnaAkaYeevDea 76 
                 +L+as +   +++  +++E ++L +s+++ A++  e De+
  KOO24745.1 130 KLAASVKVHTETQVTCDEETAKLVASVKAHAETHAECDEE 169
                 78889998999999************************98 PP

  == domain 6  score: 8.7 bits;  conditional E-value: 0.00077
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC CS
     EspB_PE  37 qLnasAealrkylaageaErerLAesLrnaAkaYeevDea 76 
                 +L as +a +++ a +++E+++LA+s+++ A++  e De+
  KOO24745.1 172 KLVASVKAHAETHAECDEEKAKLAASVKAHAETHAECDEE 211
                 7999999999****************************97 PP

  == domain 7  score: 5.4 bits;  conditional E-value: 0.0082
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
     EspB_PE  36 eqLnasAealrkylaageaErerLAesLrnaAk 68 
                 ++L as +a ++++  +++E+++LA+s+++ A+
  KOO24745.1 213 RKLVASVKAHAETQVKCDEEKAKLAASVKAHAE 245
                 78999**********************999886 PP

  == domain 8  score: 6.6 bits;  conditional E-value: 0.0035
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC CS
     EspB_PE  36 eqLnasAealrkylaageaErerLAesLrnaAkaYeevDea 76 
                 ++L+as +a ++++  +++E ++L +s+++ A++  e De+
  KOO24745.1 234 AKLAASVKAHAETQVTCHEETRKLVASVKAHAETHAECDEE 274
                 689************************************98 PP

  == domain 9  score: 5.7 bits;  conditional E-value: 0.0069
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC CS
     EspB_PE  35 veqLnasAealrkylaageaErerLAesLrnaAkaYeevDea 76 
                 +++L as +a +++ a +++E+++L +s+++ A++  e De+
  KOO24745.1 254 TRKLVASVKAHAETHAECDEEKAKLVASVKAHAETHAECDEE 295
                 67899999999*****************************98 PP

  == domain 10  score: 8.9 bits;  conditional E-value: 0.0007
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC CS
     EspB_PE  37 qLnasAealrkylaageaErerLAesLrnaAkaYeevDea 76 
                 +L as +a +++ a +++E+++LA+s+++ A++  e De+
  KOO24745.1 277 KLVASVKAHAETHAECDEEKAKLAASVKAHAETHAECDEE 316
                 7999999999****************************98 PP

  == domain 11  score: 8.7 bits;  conditional E-value: 0.00081
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC CS
     EspB_PE  36 eqLnasAealrkylaageaErerLAesLrnaAkaYeevDea 76 
                 ++L+as +a +++ a +++E+++LA+s+++ A++  e De+
  KOO24745.1 297 AKLAASVKAHAETHAECDEEKAKLAASVKAHAETHAECDEE 337
                 5899***********************************97 PP

  == domain 12  score: 3.1 bits;  conditional E-value: 0.044
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
     EspB_PE  36 eqLnasAealrkylaageaErerLAesLrnaAkaYeevD 74 
                 ++L+as +a +++ a +++E ++L +s+++ A++  e D
  KOO24745.1 318 AKLAASVKAHAETHAECDEETRKLVASVKAHAETHAECD 356
                 578999999999999999999999999999999888877 PP

  == domain 13  score: 0.8 bits;  conditional E-value: 0.23
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
     EspB_PE  36 eqLnasAealrkylaageaErerLAesLrnaA 67 
                 ++L as +a ++++ a ++E+++L +s+++ A
  KOO24745.1 360 RKLVASVKAHAETQVAYDEEKAKLVASVKAHA 391
                 6899999999*************999988766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (392 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1766  (0.0984996); expected 358.6 (0.02)
Passed bias filter:                      263  (0.014669); expected 358.6 (0.02)
Passed Vit filter:                        96  (0.00535445); expected 17.9 (0.001)
Passed Fwd filter:                        64  (0.00356964); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 1.62u 0.32s 00:00:01.94 Elapsed: 00:00:00.52
# Mc/sec: 2288.76
//
Query:       KOO24746.1  [L=317]
Description: hypothetical protein Ctob_011255 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
  ------ inclusion threshold ------
      0.082   13.0   1.7       0.24   11.5   1.7    1.8  1  Antirestrict  Antirestriction protein
       0.21   11.8   0.3       0.31   11.3   0.3    1.4  1  DUF4263       Domain of unknown function (DUF4263)
       0.96    9.6  23.0       0.86    9.8   6.3    2.2  2  DUF3347       Protein of unknown function (DUF3347)
        1.1    9.1   7.9        1.4    8.9   7.9    1.0  1  TFIIA         Transcription factor IIA, alpha/beta subunit
        4.9    4.9  11.1        6.5    4.5  11.1    1.0  1  V_ATPase_I    V-type ATPase 116kDa subunit family


Domain annotation for each model (and alignments):
>> Antirestrict  Antirestriction protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   1.7   6.7e-05      0.24      37      85 ..     145     193 ..     138     197 .. 0.91

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 6.7e-05
  Antirestrict  37 fegevSadAaGiivtllalshlaeeteedalaeryerLreyalqHpeaa 85 
                    ++e+ a+Aa    tl a ++ a+  e+++l+e yerLr+ a+q +ea+
    KOO24746.1 145 ARQEMAAEAAAALETLKAKAAEAAASEKEELTETYERLRAEAAQVAEAE 193
                   689**************999999999*****************999986 PP

>> DUF4263  Domain of unknown function (DUF4263)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.3   8.7e-05      0.31      56     107 ..     198     248 ..     170     307 .. 0.76

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 8.7e-05
     DUF4263  56 knlltkekkkgniapseelsgaisQikkylllldknkek.geeladlrntsel 107
                  +l+++++   + + ++el +a+sQ++++l+ ++ ++++  e la  r+ +e 
  KOO24746.1 198 RELFEAKTAAATAVAAAELADALSQAEERLAAAKAAAAEeSETLA--REAAEA 248
                 567775555599999***************999977666444444..333333 PP

>> DUF3347  Protein of unknown function (DUF3347)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   6.3   0.00024      0.86      69     135 ..     147     210 ..     140     217 .. 0.73
   2 ?    4.7  10.0    0.0086        31      59     141 ..     215     300 ..     205     307 .. 0.76

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.00024
     DUF3347  69 akeakkaakkleeklkavdtsklkekekkelkeiseelkekaekiaeskdieeqReaFkklsedlik 135
                 ++ a++aa++le+ lka  +++  ++ek+el+e  e l+++a ++ae+ +++ qRe F+  ++  ++
  KOO24746.1 147 QEMAAEAAAALET-LKAK-AAEAAASEKEELTETYERLRAEAAQVAEA-ELDRQRELFEAKTAAATA 210
                 3444555555444.4443.46667888899*****************9.*********987666555 PP

  == domain 2  score: 4.7 bits;  conditional E-value: 0.0086
     DUF3347  59 klkdALvaddak..eakkaakkleeklkavdtsklkeke.kkelkeiseelkekaekiaeskdieeqReaFkklsedliklvkafg 141
                 +l dAL ++++   +ak+aa++ +e+l+   +++lk+ + +++ +   ++l+ ++  i+++++++  R+aF    ++l+k +++++
  KOO24746.1 215 ELADALSQAEERlaAAKAAAAEESETLAREAAEALKTAQaRAAAEVEAAKLALEMGRIKAEEELAMARSAFLAEKQELVKSLREAE 300
                 688999888775115666677777888888899996555055556667899999*****************998888888877655 PP

>> TFIIA  Transcription factor IIA, alpha/beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.9   7.9   0.00038       1.4      85     285 ..      65     290 ..      28     315 .. 0.33

  Alignments for each domain:
  == domain 1  score: 8.9 bits;  conditional E-value: 0.00038
       TFIIA  85 stsqslpslvipagksvqslt.anssaataatfslpakleppvqipagvtlqtasg......qlykvnv.qasgaqqiaaqplqqvvqqsqgsaaqssv 175
                 s+++s+  ++ +a  +v+ +  + s+ ++a+ + + a   p+    ag t+++a+       ++  v v  +++ ++ia ++ q++     ++ a++++
  KOO24746.1  65 SAASSTVRVTRSALGEVRVFVrTASADGDAKGTVMGAVAAPEAAALAGNTTSVANRtdasavTAARVAVlGPQALREIA-RARQEM-----AAEAAAAL 157
                 3334444444444445555553344544444444555566777778888888888754443322233334333333333.222233.....23333333 PP

       TFIIA 176 aalqaqsqqaqalaepqqqlekq.......qqqqqqqqqqqqqqqvqqqqqe...................esqqaqqasqeqvagsqvessqtdgaed 248
                 + l+a+  +a+a+a ++++l++        ++q         ++  ++q +                            sq +   ++++++  +++e 
  KOO24746.1 158 ETLKAK--AAEAAASEKEELTETyerlraeAAQ-------VAEAELDRQRELfeaktaaatavaaaeladaL-------SQAEERLAAAKAAAAEESET 240
                 333333..2222222222211111112211111.......11111111111121111112222222211110.......11111111111111111111 PP

       TFIIA 249 aleeespv...legelsaeeeagaqkeelsreeidrire.....................e 285
                  ++e++++    +++ +ae ea++              e                     +
  KOO24746.1 241 LAREAAEAlktAQARAAAEVEAAKLAL-----------EmgrikaeeelamarsaflaekQ 290
                 111111111112222222222222222...........03333333334445555533331 PP

>> V_ATPase_I  V-type ATPase 116kDa subunit family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.5  11.1    0.0018       6.5      44     200 ..     147     307 ..     136     313 .. 0.48

  Alignments for each domain:
  == domain 1  score: 4.5 bits;  conditional E-value: 0.0018
  V_ATPase_I  44 eeieklekavikeeeaeesleapeekeldeleeelekleeelkelnenleklkkelnelvelkavlekakefleeeeeeeeeeeseeeeee.......k 135
                 +e++ ++ a  ++   +++ +++ ++e +el+e+ e+l +e  ++ e + + ++el e++ + a    a+e+ ++ ++ ee+  + +++++       +
  KOO24746.1 147 QEMAAEAAAALETL--KAKAAEAAASEKEELTETYERLRAEAAQVAEAELDRQRELFEAKTAAATAVAAAELADALSQAEERLAAAKAAAAeesetlaR 243
                 33333222222222..33444444445555555555555555555555554444444444444444444444332222111111111111111111111 PP

  V_ATPase_I 136 eeeeeeeseeeeeeelleeeee.........lsfvaGvikrekveaferilwralrgnlflrqaeieepledpe 200
                 e++e+ +++ ++         +         l   +G ik+e+  a+ r  + a +++l+ +  e ee+ e ++
  KOO24746.1 244 EAAEALKTA-QA---------RaaaeveaakLALEMGRIKAEEELAMARSAFLAEKQELVKSLREAEERAEKAK 307
                 111111111.11.........12233444448889*************************99999999766543 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (317 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2529  (0.141056); expected 358.6 (0.02)
Passed bias filter:                      553  (0.0308439); expected 358.6 (0.02)
Passed Vit filter:                        77  (0.00429472); expected 17.9 (0.001)
Passed Fwd filter:                        17  (0.000948185); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.68u 0.28s 00:00:00.96 Elapsed: 00:00:00.44
# Mc/sec: 2182.91
//
Query:       KOO24747.1  [L=219]
Description: hypothetical protein Ctob_011254 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.9e-11   44.0   0.0    3.7e-11   43.7   0.0    1.1  1  NYN       NYN domain


Domain annotation for each model (and alignments):
>> NYN  NYN domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.7   0.0   2.1e-15   3.7e-11       3     129 ..       2     140 ..       1     154 [. 0.74

  Alignments for each domain:
  == domain 1  score: 43.7 bits;  conditional E-value: 2.1e-15
         NYN   3 avfiDgenlpvpak......gke.vdyrklleeirs....kgelvraraygnwedeeqnkfqdalsstgikvkhkplkkrg.gsgkkavDvelavdale 89 
                 av +D+ +l+v+ k      ++    ++k l         +g +v ++a  + +++  n ++ al+s g++++  p k  +   g  +vDv++++ a+ 
  KOO24747.1   2 AVVVDVHYLQVAVKafslsgSWSiSAFEKALV---AacggTGTIVKRFACDSSKEGGANPLHAALASEGYELVLSPPKPSNgMQGATDVDVACCIFAVA 97 
                 899**********9776655444334443333...24446888988888888888889************7777777655556677899999****999 PP

         NYN  90 laydnky..dtivLvsgDgDFaplveklrergkrVevlla.ee 129
                  a+  ++  dt+vL++gD+DF p++ ++   g+   v  + e+
  KOO24747.1  98 GAFAAQPvaDTLVLIAGDSDFRPALVAALGSGRSLQVAVVaES 140
                 999998899**************98887766654444443243 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (219 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       252  (0.0140554); expected 358.6 (0.02)
Passed bias filter:                      182  (0.0101512); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.25s 00:00:00.64 Elapsed: 00:00:00.39
# Mc/sec: 1666.53
//
Query:       KOO24748.1  [L=140]
Description: hypothetical protein Ctob_011256 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
     0.0078   14.8   0.8      0.015   13.9   0.0    1.7  2  Het-C       Heterokaryon incompatibility protein Het-C
  ------ inclusion threshold ------
        1.1    8.3   7.1        1.2    8.1   7.1    1.1  1  DUF1501     Protein of unknown function (DUF1501)
        4.7    7.3  19.1        6.4    6.9  19.1    1.1  1  TPR_MLP1_2  TPR/MLP1/MLP2-like protein


Domain annotation for each model (and alignments):
>> Het-C  Heterokaryon incompatibility protein Het-C
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.9   0.0   2.5e-06     0.015      29      90 ..       3      68 ..       1      75 [. 0.82
   2 ?   -0.6   0.2     0.059   3.5e+02      23      48 ..      96     121 ..      68     137 .. 0.43

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 2.5e-06
       Het-C 29 vegknwRhGDiedvlktlallkgkkftkld....vkrvYfGnWLrDysqavDvgtlkkvsaetiri 90
                 eg ++R GD+ +v  ++ + +g+k  +      + +   G W rDy+ a+    l + + ++ r+
  KOO24748.1  3 TEGDSFREGDVFNVNVNVEFGEGQKVRGAAaddaLAHYLDGAWRRDYADALSAQQLAATQRDAARA 68
                599**********************987751111344445************99999999988775 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 0.059
       Het-C  23 iasiskvegknwRhGDiedvlktlal 48 
                  a  +++e  +    D+e++ +++a+
  KOO24748.1  96 AAKAATIEQAASEKLDMEEMAAAVAK 121
                 22233333333333333333333332 PP

>> DUF1501  Protein of unknown function (DUF1501)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.1   7.1   0.00021       1.2     148     229 ..      50     131 ..      24     138 .. 0.81

  Alignments for each domain:
  == domain 1  score: 8.1 bits;  conditional E-value: 0.00021
     DUF1501 148 vldlsppagvteerqrrrldllkklnqehlqrkndeeleariasyelafralmqseapeafdlsdeteatreaygrdaketk 229
                  ++ls ++    +r+++r++++++ +++ ++ + +e++ a++++   a +a  +++a+e +d++++++a+++a  r++k+++
  KOO24748.1  50 ADALSAQQLAATQRDAARAEIAAAKAEMEAEVEAAEQIFAAAKAAAAAKAATIEQAASEKLDMEEMAAAVAKANERAEKAKA 131
                 5677888888889999999999988888889999999999999999999999******************999999985433 PP

>> TPR_MLP1_2  TPR/MLP1/MLP2-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.9  19.1    0.0011       6.4       7      87 ..      53     133 ..      48     138 .. 0.93

  Alignments for each domain:
  == domain 1  score: 6.9 bits;  conditional E-value: 0.0011
  TPR_MLP1_2   7 eeeikslkeekeeaeaklqklqedlekqaeiakeaqqkYerelvkhaedvkelqalreelnelkaeiaelkaeaesakael 87 
                  + ++ + ++ ++a+a++++++ ++e++ e a++     +     +a+++++ ++ + +++e+ a +a+++++ae+aka+ 
  KOO24748.1  53 LSAQQLAATQRDAARAEIAAAKAEMEAEVEAAEQIFAAAKAAAAAKAATIEQAASEKLDMEEMAAAVAKANERAEKAKAAA 133
                 67788889999*******************************************************************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (140 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2163  (0.120643); expected 358.6 (0.02)
Passed bias filter:                      598  (0.0333538); expected 358.6 (0.02)
Passed Vit filter:                        73  (0.00407162); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.44u 0.25s 00:00:00.69 Elapsed: 00:00:00.40
# Mc/sec: 1054.15
//
Query:       KOO24749.1  [L=644]
Description: methyltransferase type 11 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.9e-33  115.2   0.1      7e-33  114.4   0.1    1.4  1  Cofac_haem_bdg   Haem-binding uptake, Tiki superfamily, ChaN
    4.8e-20   72.0   0.2    3.6e-19   69.2   0.1    2.5  2  Methyltransf_11  Methyltransferase domain
    1.3e-19   70.5   0.0    2.2e-19   69.7   0.0    1.4  1  Methyltransf_31  Methyltransferase domain
    8.7e-19   68.0   0.3    5.7e-18   65.4   0.1    2.4  2  Methyltransf_25  Methyltransferase domain
    6.2e-11   42.1   0.0    1.4e-10   40.9   0.0    1.5  2  Ubie_methyltran  ubiE/COQ5 methyltransferase family
    4.4e-09   37.0   0.0    8.9e-09   36.0   0.0    1.6  1  Methyltransf_12  Methyltransferase domain
    1.4e-07   31.5   0.0    2.8e-07   30.5   0.0    1.5  1  Methyltransf_23  Methyltransferase domain
      2e-06   27.3   0.0      3e-06   26.7   0.0    1.2  1  CMAS             Mycolic acid cyclopropane synthetase
    1.2e-05   25.1   0.1    5.4e-05   23.0   0.0    1.9  2  PCMT             Protein-L-isoaspartate(D-aspartate) O-methyl
    0.00015   21.7   0.0    0.00025   21.0   0.0    1.2  1  Methyltransf_8   Hypothetical methyltransferase
    0.00048   20.2   0.0    0.00092   19.2   0.0    1.4  1  Methyltransf_32  Methyltransferase domain
     0.0052   16.2   0.1     0.0081   15.6   0.1    1.2  1  PrmA             Ribosomal protein L11 methyltransferase (Prm
  ------ inclusion threshold ------
       0.02   14.4   0.0      0.031   13.8   0.0    1.2  1  DOT1             Histone methylation protein DOT1
      0.047   13.2   0.0        0.1   12.1   0.0    1.5  1  MTS              Methyltransferase small domain
        0.1   12.3   0.0       0.19   11.4   0.0    1.4  1  UPF0020          Putative RNA methylase family UPF0020


Domain annotation for each model (and alignments):
>> Cofac_haem_bdg  Haem-binding uptake, Tiki superfamily, ChaN
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  114.4   0.1   5.8e-36     7e-33       3     214 .]      73     276 ..      72     276 .. 0.90

  Alignments for each domain:
  == domain 1  score: 114.4 bits;  conditional E-value: 5.8e-36
                     HHHTT-SEEEEEE-TT-HHHHHHHHHHHHHH..HTT--EEEEEEEEEGGGHHHHHHHHHT.HHH......TT--TTS-..GGGTHHHHHHHH..T CS
  Cofac_haem_bdg   3 kelaqadvvllGEkHdnpdhhalqlellkaLa.aagarlalglEmferdqqpaLdrylagkideeellealewekrWgydwalYrpllefar..e 94 
                     +++++a++v++GE H+ p   +lq ++  a+  + +  l+++lE+++ +qqp+Ld+y++g++  +elle++    + g+d+  Y+pll++ r  +
      KOO24749.1  73 RAISEARLVVVGEIHSVPPCIELQRRTAVAMMaEGRGLLHIVLEHLNFEQQPLLDAYADGTLGMAELLEQYRQ-GTEGHDLVPYEPLLALGRlhR 166
                     67899**********************999985334589*******************************955.45569************9777 PP

                     SS--EEEEE--HHHHHHHHTT......------SSSS........-HHHHHHHHHHHHHHHT-....TTTHHHHHHHHHHHHHHHHHHHHHHHH- CS
  Cofac_haem_bdg  95 aglplvalnlprelvrkvareGleslseeeereraslpaeseileseeyraaleevlaehhcg....eakeealerfveaQvlwDetMAesiaaa 185
                     a ++l+a+++pr+++r v+re  e+  + ++r++ ++  + +++ ++++++++e++l + + +    +a+ +++++++ aQv++D++MA+++   
      KOO24749.1 167 AAVRLHAGFIPRSYARMVMRESPEAALA-AARDKGYVSDAESLDATDAHYDFFESLLTGRNRHatppMAPTDKFRKMFPAQVIKDAAMAHKV--- 257
                     799*****************99777766.6777778876666699************99998899999*********************987... PP

                     SS.E.....EEEEEEHHHH-TTTSHHHHH CS
  Cofac_haem_bdg 186 lkarnpgklvvviaGsgHveyglGiparl 214
                               +vi+G gH+ y +G+p+r+
      KOO24749.1 258 ----------LVICGVGHSGYSHGVPERI 276
                     ..........69**************997 PP

>> Methyltransf_11  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.0       2.5     3e+03      38      65 ..     196     218 ..     175     223 .. 0.73
   2 !   69.2   0.1     3e-22   3.6e-19       2      96 .]     428     531 ..     427     531 .. 0.90

  Alignments for each domain:
  == domain 1  score: -1.0 bits;  conditional E-value: 2.5
                      CCHHT-EEEETTEECCCTSS-TT-EEEE CS
  Methyltransf_11  38 aseeglkvefvvadaeklpfednsfDlv 65 
                      a+++g      v+dae+l   d+ +D+ 
       KOO24749.1 196 ARDKG-----YVSDAESLDATDAHYDFF 218
                      33444.....799*********999985 PP

  == domain 2  score: 69.2 bits;  conditional E-value: 3e-22
                      EET-TTSHHHHHHH...HTT...SEEEEEES-HHHHHHHHHHCCHHT-...EEEETTEECCCTSS-TT-EEEEEEES-CCC-CCHHHHHHHHHH CS
  Methyltransf_11   2 dvGcGtGrlaeala...krg...arvvgvDlskemlklakekaseegl...kvefvvadaeklpfednsfDlvvssevlhhvedpekalkeiaR 86 
                      d+G+G G+ +   a    +g   ++vvg+Dl+++ ++ a ++a  +gl    v+f v+d+e+lp++d+s D+v+s+ +++ v++ + a++e+ R
       KOO24749.1 428 DLGSGLGIDSFIAAaavTAGgarGSVVGIDLAEKEVRHATARAAARGLvetAVRFAVGDLERLPLADESADAVISNGAFCLVPNKATAFAEVFR 521
                      889998887777775453337889************99999999999999*9****************************************** PP

                      HEEEEEEEEE CS
  Methyltransf_11  87 vLkpgGllvi 96 
                      +LkpgG+++i
       KOO24749.1 522 ILKPGGRFAI 531
                      *******986 PP

>> Methyltransf_31  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.7   0.0   1.9e-22   2.2e-19       3     119 ..     422     541 ..     420     573 .. 0.90

  Alignments for each domain:
  == domain 1  score: 69.7 bits;  conditional E-value: 1.9e-22
  Methyltransf_31   3 kglrvlDlGCGtGeltfelae...elgpkaevvGiDiseeaielArenaqklgld..nveFeqgdieeleklledekfDlilsnevlnaladpd 91 
                       g rv+DlG+G G ++f +a      g ++ vvGiD  e+ +++A+++a+  gl    v+F +gd e l+  l+de+ D ++sn++++++++++
       KOO24749.1 422 PGERVVDLGSGLGIDSFIAAAavtAGGARGSVVGIDLAEKEVRHATARAAARGLVetAVRFAVGDLERLP--LADESADAVISNGAFCLVPNKA 513
                      6789****************97744455888**********************98789************..99******************** PP

  Methyltransf_31  92 kileeiervlkpggilliedprllaelp 119
                       ++ e++r lkpgg+++i++  +l+ l 
       KOO24749.1 514 TAFAEVFRILKPGGRFAIATSVVLQPLE 541
                      *******************999666554 PP

>> Methyltransf_25  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.0       2.5   2.9e+03      49      68 ..     199     218 ..     178     234 .. 0.76
   2 !   65.4   0.1   4.7e-21   5.7e-18       1      97 []     426     527 ..     426     527 .. 0.94

  Alignments for each domain:
  == domain 1  score: -1.0 bits;  conditional E-value: 2.5
                      EEEESBCCGBSSSTTTEEEE CS
  Methyltransf_25  49 efvqgdaedlpfedgsfDlv 68 
                      + ++ dae+l+  d+++D+ 
       KOO24749.1 199 KGYVSDAESLDATDAHYDFF 218
                      45789999999999999985 PP

  == domain 2  score: 65.4 bits;  conditional E-value: 4.7e-21
                      EEEET-TTSHHHHHHHCTS...T.SSEEEEEESSHHHHHHHHHHHHHTTT...TEEEEESBCCGBSSSTTTEEEEEEESTGGGSSHHHHHHHHH CS
  Methyltransf_25   1 vLdlGcGtGrltlalakrl...g.kakvtgvDiseemleaareraeeegl...nvefvqgdaedlpfedgsfDlvvssgalhhlsdedlekalk 87 
                      v+dlG G G +++ +a+++   g +++v+g+D++e+ +++a +ra+++gl    v+f +gd+e+lp++d+s D+v+s+ga++++++   ++a++
       KOO24749.1 426 VVDLGSGLGIDSFIAAAAVtagGaRGSVVGIDLAEKEVRHATARAAARGLvetAVRFAVGDLERLPLADESADAVISNGAFCLVPN--KATAFA 517
                      89**********9999998885489**********************999999************************988999985..5699** PP

                      HHHHHEEEEE CS
  Methyltransf_25  88 eiarvLkpgG 97 
                      e++r+LkpgG
       KOO24749.1 518 EVFRILKPGG 527
                      *********9 PP

>> Ubie_methyltran  ubiE/COQ5 methyltransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.9   0.0   1.2e-13   1.4e-10      46     151 ..     421     531 ..     414     552 .. 0.84
   2 ?   -2.8   0.0       2.7   3.3e+03     195     218 ..     549     572 ..     534     576 .. 0.85

  Alignments for each domain:
  == domain 1  score: 40.9 bits;  conditional E-value: 1.2e-13
                      --TTEEEEES-TT-.H..HHHHHHHHHHHHHEEEEEES-HHHHHHHHHHHHHHTSS..TEEEEE--TTT-TTS-T-EEEEEEES-GGG-S-HHH CS
  Ubie_methyltran  46 krgakvlDvagGtg.D..lafklsdsvgekgkvvvlDinenmLkvgekklkeegki..nieflqanaeeLpfeddsfDvvtvsfGlrnvtDklk 134
                      ++g++v+D+ +G g D  +a++   + g++g vv++D+ e+ ++ + +++  +g +   ++f +++ e+Lp  d+s D v     +  v++k +
       KOO24749.1 421 QPGERVVDLGSGLGiDsfIAAAAVTAGGARGSVVGIDLAEKEVRHATARAAARGLVetAVRFAVGDLERLPLADESADAVISNGAFCLVPNKAT 514
                      67899*****999833224555556667888***********************98789*******************98655557789***** PP

                      HHHHHHHHEEEEEEEEE CS
  Ubie_methyltran 135 aLkeayrvlkpGGrlvv 151
                      a+ e++r+lkpGGr+ +
       KOO24749.1 515 AFAEVFRILKPGGRFAI 531
                      **************975 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 2.7
                      HHHS--HHHHHHHHHHTTEEEEEE CS
  Ubie_methyltran 195 irafPdqetlkeliedaGfksvey 218
                      +r+f + + l+ l   aGf+s+e 
       KOO24749.1 549 MRMFSELHSLRPLATAAGFTSIEL 572
                      7999999************99875 PP

>> Methyltransf_12  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.0   0.0   7.4e-12   8.9e-09       1      99 []     427     529 ..     427     529 .. 0.92

  Alignments for each domain:
  == domain 1  score: 36.0 bits;  conditional E-value: 7.4e-12
  Methyltransf_12   1 LeiGcGtGsllrallekl....pdieytgvDispsaiedakeklakrennnnnnvelealdlldldgg.ssfDlvvasnvlhhlkdirevldni 89 
                      +++G+G G  ++  +++      + +++g+D+ ++ + +a ++ a+r+ +  + v++ + dl+ l+   +s D+v+++++++ +++++ +++++
       KOO24749.1 427 VDLGSGLGIDSFIAAAAVtaggARGSVVGIDLAEKEVRHATARAAARG-LVETAVRFAVGDLERLPLAdESADAVISNGAFCLVPNKATAFAEV 519
                      599*********999999*******************66666666655.799*********99888889************************* PP

  Methyltransf_12  90 rklLkpgGrl 99 
                       + LkpgGr+
       KOO24749.1 520 FRILKPGGRF 529
                      ********96 PP

>> Methyltransf_23  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.5   0.0   2.4e-10   2.8e-07      19     134 ..     419     546 ..     408     572 .. 0.67

  Alignments for each domain:
  == domain 1  score: 30.5 bits;  conditional E-value: 2.4e-10
  Methyltransf_23  19 klraggrvLdiGcGtGillevlrengf......svtgvDlspeaveiae........kakkaqkdqfdeqeaaepqgkfdlIvlrevlehvpdp 98 
                      +l++g rv+d+G G Gi + ++++ ++      sv+g+Dl ++ v  a              ++   d +  +  +++ d ++++  ++ vp+ 
       KOO24749.1 419 RLQPGERVVDLGSGLGIDSFIAAAAVTaggargSVVGIDLAEKEVRHATaraaarglVETAVRFAVGDLERLPLADESADAVISNGAFCLVPNK 512
                      578999**********98666655433333488*******9988888755555555422222222222223333666***************** PP

  Methyltransf_23  99 pellrqiatllkpgGylllseplaslkedrllldwl 134
                      + +++ ++++lkpgG++ + ++ + ++ ++   +w+
       KOO24749.1 513 ATAFAEVFRILKPGGRFAIATSVVLQPLEEG--QWP 546
                      *****************99997544332222..343 PP

>> CMAS  Mycolic acid cyclopropane synthetase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.7   0.0   2.5e-09     3e-06      52     171 ..     412     538 ..     392     545 .. 0.77

  Alignments for each domain:
  == domain 1  score: 26.7 bits;  conditional E-value: 2.5e-09
                 HHHHTTTT--TT-EEEEES-TTSH...HHHHHHHHH--..EEEEEES-HHHHHHHHHHHHTS-SSS.-EEEEES-GGG-...----SEEEEES-GGGTS CS
        CMAS  52 dlileklelkpGmtlLdiGcGWGs...lvrraverydv..kvvglTlSkeqaklakkrvdeldler.kvevklldyedl...dekvdrvvsvgafehvg 141
                     + ++l+pG++++d+G G G    ++  av   ++  +vvg+ l +++ ++a +r ++++l +  v+  + d e l   de  d+v+s gaf  v 
  KOO24749.1 412 ASPHQHARLQPGERVVDLGSGLGIdsfIAAAAVTAGGArgSVVGIDLAEKEVRHATARAAARGLVEtAVRFAVGDLERLplaDESADAVISNGAFCLVP 510
                 45567899***************722233344444444447**********************8551678999999988333469**********9886 PP

                 GGGHHHHHHHHHHHS-TT-EEEEEEEEE-- CS
        CMAS 142 kenydtffkklkkllkedGllllhtitslh 171
                 ++  +t f++++++lk++G++++ t + l+
  KOO24749.1 511 NK--ATAFAEVFRILKPGGRFAIATSVVLQ 538
                 55..6789**************99987765 PP

>> PCMT  Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.0       1.2   1.4e+03     123     142 ..     254     273 ..     244     277 .. 0.77
   2 !   23.0   0.0   4.5e-08   5.4e-05      56     133 ..     405     487 ..     381     541 .. 0.69

  Alignments for each domain:
  == domain 1  score: -1.2 bits;  conditional E-value: 1.2
                 TCSEEEEES-GGGTTGGG-S CS
        PCMT 123 lenvivvvgDGrkGyeekaP 142
                 +++v v++g G+ Gy +  P
  KOO24749.1 254 AHKVLVICGVGHSGYSHGVP 273
                 459************97666 PP

  == domain 2  score: 23.0 bits;  conditional E-value: 4.5e-08
                 E--HHHHHHHHHHTT--TT-EEEEES-TTSHHHHHHHHHHCTTC...EEEEEESBHHHHHHHHHHHHHCTTC..SEEEEES-G CS
        PCMT  56 iSaphmvalalellelkkgarvLevGsGsGyltavlarlvgekg...rvvsierikelveeakrnlkkldle..nvivvvgDG 133
                 + + + va   ++ +l++g+rv+++GsG G+ + + a  v + g    vv+i+  ++ v++a+++  + +l    v + vgD 
  KOO24749.1 405 SANFQGVASPHQHARLQPGERVVDLGSGLGIDSFIAAAAVTAGGargSVVGIDLAEKEVRHATARAAARGLVetAVRFAVGDL 487
                 444556777788889*****************9999999965444449************99999988887745777777774 PP

>> Methyltransf_8  Hypothetical methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.0   0.0   2.1e-07   0.00025     100     157 ..     474     532 ..     450     538 .. 0.81

  Alignments for each domain:
  == domain 1  score: 21.0 bits;  conditional E-value: 2.1e-07
                     ESS-SSTTEEES-TTS-S--TT-EEEEEEES--.-SS-HHHHHHHHHHHEEEEEEEEEE CS
  Methyltransf_8 100 dlvavnervvacdlakvPledesvdvavfclsl.mgtnladflkeanrvlkvGGllkva 157
                      lv    r  + dl ++Pl+des+d ++   ++ ++ n a+   e+ r+lk+GG + +a
      KOO24749.1 474 GLVETAVRFAVGDLERLPLADESADAVISNGAFcLVPNKATAFAEVFRILKPGGRFAIA 532
                     566677788899*************9996544325789999999************998 PP

>> Methyltransf_32  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.2   0.0   7.7e-07   0.00092      24      90 ..     421     488 ..     408     517 .. 0.84

  Alignments for each domain:
  == domain 1  score: 19.2 bits;  conditional E-value: 7.7e-07
  Methyltransf_32  24 sgaltvvDvGaGkgYLsfvlal..kekeyklkvvgidakeelvekaekraeklgkkfnkrlsfaelsie 90 
                      ++ ++vvD+G+G g  sf+ a   ++   + +vvgid+ e+ v++a +ra++ g  +++ ++fa ++ e
       KOO24749.1 421 QPGERVVDLGSGLGIDSFIAAAavTAGGARGSVVGIDLAEKEVRHATARAAARG-LVETAVRFAVGDLE 488
                      56789****************97444459*********************9999.67777777766655 PP

>> PrmA  Ribosomal protein L11 methyltransferase (PrmA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.1   6.8e-06    0.0081     158     257 ..     419     530 ..     415     539 .. 0.68

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 6.8e-06
        PrmA 158 lvkegeevlDvGtGSGiLa.iaaakLga....kkvvavDiDevAvkvakeNaelNkvea...klevalseell.keekadvivaN...ILaevlielae 244
                  +++ge+v+D+G G Gi + iaaa + a     +vv++D+ e  v+ a + a+  ++ +   ++ v   e+l+ ++e+ad +++N    L         
  KOO24749.1 419 RLQPGERVVDLGSGLGIDSfIAAAAVTAggarGSVVGIDLAEKEVRHATARAAARGLVEtavRFAVGDLERLPlADESADAVISNgafCLVPNKATAFA 517
                 57999************876677766552223489***********99888777655542224444334444444899*****9943334333344555 PP

        PrmA 245 dikklvkegglli 257
                 ++ +++k+gg+++
  KOO24749.1 518 EVFRILKPGGRFA 530
                 6777777777765 PP

>> DOT1  Histone methylation protein DOT1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.0   2.6e-05     0.031      32     130 ..     412     511 ..     405     539 .. 0.71

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 2.6e-05
                 HHHHHHTT--TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE--HHHHHHHHHHHHHHHHHHHHTTB----EEEESS-S....TT-HHHHHHGGG-SEE CS
        DOT1  32 sevldkvnlkkedvFvDLGSGvGnvvlqaalevgcklsvGvEimdnaselaekqkeelkkrlklfGkklakiefirksF....venekveeiieeadvi 126
                 ++  ++  l++ +  vDLGSG+G   + aa++v      G   +    +laek+ +  ++r++  G+  ++++f+ ++     + +e    +i++    
  KOO24749.1 412 ASPHQHARLQPGERVVDLGSGLGIDSFIAAAAVTAG---GARGSVVGIDLAEKEVRHATARAAARGLVETAVRFAVGDLerlpLADESADAVISNGAFC 507
                 55568999***************9999999888766...777777788899999999999999999999999998888622223344444444444444 PP

                 EE-- CS
        DOT1 127 lvNN 130
                 lv N
  KOO24749.1 508 LVPN 511
                 4443 PP

>> MTS  Methyltransferase small domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   8.7e-05       0.1      31     136 ..     422     530 ..     415     541 .. 0.71

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 8.7e-05
                 TCSEEEEET-TTSH...HHHHHHHH.TTC.EEEEEESBHHHHHHHHHHHHHTTGC...EEEEE-STTT.TSTTS-EEEEEE---STTTCHCHHHHHHHH CS
         MTS  31 lsgkvlDlGcGaGv...lgaalake.speaevtlvdvdarAlesakenleankle...vevvasdvle.eveekkfdlivsNPPfhagkatelavaeel 121
                   ++v+DlG+G G+   ++aa+  +   + +v+ +d   + ++ a++ ++a +l    v++   d+    +++++ d+++sN  f    ++      + 
  KOO24749.1 422 PGERVVDLGSGLGIdsfIAAAAVTAgGARGSVVGIDLAEKEVRHATARAAARGLVetaVRFAVGDLERlPLADESADAVISNGAFCLVPNK-----ATA 515
                 5678*********733344443333145566999**********99999999887788899999987635679*********888665552.....223 PP

                 HHHHHHHEEEEEEEE CS
         MTS 122 iaeAkeaLkegGeLl 136
                 +ae  ++Lk+gG++ 
  KOO24749.1 516 FAEVFRILKPGGRFA 530
                 344445666666655 PP

>> UPF0020  Putative RNA methylase family UPF0020
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   0.00016      0.19      75     128 ..     449     503 ..     414     508 .. 0.87

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00016
                 HH--EEEEES-HHHHHHHHHHHHHTT.-GGGEEEEE--GGG--STTS---EEEE- CS
     UPF0020  75 aelklygsDldrrvvqgareNaekag.vgdliefsqadaakLrlkegevdvivtn 128
                 a+ +++g+Dl ++ v+ a   a + g v+  + f + d   L+l++++ d++++n
  KOO24749.1 449 ARGSVVGIDLAEKEVRHATARAAARGlVETAVRFAVGDLERLPLADESADAVISN 503
                 55679*************99988776368889***********9999*******9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (644 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       470  (0.0262145); expected 358.6 (0.02)
Passed bias filter:                      352  (0.019633); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                        15  (0.000836633); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              15  [number of targets reported over threshold]
# CPU time: 0.55u 0.25s 00:00:00.80 Elapsed: 00:00:00.38
# Mc/sec: 5054.19
//
Query:       KOO24750.1  [L=288]
Description: hypothetical protein Ctob_003435 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
     0.0017   18.1   0.3       0.04   13.7   0.0    2.5  3  RRM_1     RNA recognition motif. (a.k.a. RRM, RBD, or RNP dom
  ------ inclusion threshold ------
      0.015   14.6   0.1       0.02   14.2   0.1    1.1  1  DUF1329   Protein of unknown function (DUF1329)
          2    9.0   6.9        1.5    9.4   1.2    2.7  2  NuDC      Nuclear distribution C domain


Domain annotation for each model (and alignments):
>> RRM_1  RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.9   0.0     0.033   1.9e+02       2      25 ..      52      75 ..      51      94 .. 0.78
   2 !   13.7   0.0   6.7e-06      0.04      33      66 ..      96     130 ..      86     132 .. 0.88
   3 ?   -2.7   0.1      0.88   5.3e+03      49      62 ..     186     199 ..     183     203 .. 0.64

  Alignments for each domain:
  == domain 1  score: 1.9 bits;  conditional E-value: 0.033
                EEESETTTSSHHHHHHHHHTTSCE CS
       RRM_1  2 fVgnLppdvteeeLkelFskfGpi 25
                + + +pp ++ ++L+ l+++ G  
  KOO24750.1 52 YFSRIPPFMKPNKLRNLLEGMGTE 75
                55789***************9976 PP

  == domain 2  score: 13.7 bits;  conditional E-value: 6.7e-06
                 E.TTTSEEEEEEEEESSHHHHHHHHHHHTTEEETT CS
       RRM_1  33 d.etgkskgfafVeFeskedAekAlealngkklgg 66 
                   +++k+   a VeF++k+ A+++ ++ln++ +gg
  KOO24750.1  96 GgNKKKNFTEAWVEFDNKRRAKRIASTLNNTPIGG 130
                 4578999999*********************9987 PP

  == domain 3  score: -2.7 bits;  conditional E-value: 0.88
                 HHHHHHHHHHHTTE CS
       RRM_1  49 kedAekAlealngk 62 
                 k + +kA++a+  +
  KOO24750.1 186 KVEQAKAIDAMEDR 199
                 55667788877654 PP

>> DUF1329  Protein of unknown function (DUF1329)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   0.1   3.3e-06      0.02     140     231 ..      73     163 ..      39     193 .. 0.79

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 3.3e-06
     DUF1329 140 lryyllavtaParlaGtallvhetldqkkeprqawlYlpgqRRVRraPelayDtpqaasgglltvDdadmfnGapdrydwklvgkkemyvpy 231
                  + +l  ++aP++ +  a  v+   ++kk++ +aw+ +   RR +r+++    tp  + + ++++ d++ ++  + r++w  +  k  y + 
  KOO24750.1  73 GTEVLRVYLAPEDASARAGRVRAGGNKKKNFTEAWVEFDNKRRAKRIASTLNNTPIGGGNRDFYAHDLWNVK-YLHRFKWAHLTEKIAYEAR 163
                 456677899********************************************9999999999999999876.899******9999888655 PP

>> NuDC  Nuclear distribution C domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   1.2   0.00025       1.5      18      53 ..     167     203 ..     165     213 .. 0.78
   2 ?    1.4   0.4      0.08   4.8e+02      50      63 ..     239     252 ..     222     254 .. 0.44

  Alignments for each domain:
  == domain 1  score: 9.4 bits;  conditional E-value: 0.00025
        NuDC  18 ekLQlElDqkKkkeekekqakaesaaekkkdkae.ee 53 
                 +k+Q+El q+Kk+     q+ ++++a + +++ + + 
  KOO24750.1 167 DKMQAELSQAKKETSFYLQKVEQAKAIDAMEDRKrKR 203
                 69**********9998888888888888887776333 PP

  == domain 2  score: 1.4 bits;  conditional E-value: 0.08
        NuDC  50 aeeekseseeeEDE 63 
                         eeeEDE
  KOO24750.1 239 PRRSRVATEEEEDE 252
                 12333444555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (288 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       968  (0.0539907); expected 358.6 (0.02)
Passed bias filter:                      391  (0.0218082); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.48u 0.23s 00:00:00.71 Elapsed: 00:00:00.41
# Mc/sec: 2116.98
//
Query:       KOO24751.1  [L=548]
Description: hypothetical protein Ctob_003432 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.6e-06   27.8   0.5    8.3e-06   26.2   0.5    2.0  1  AAA_19         AAA domain
     0.0026   17.3   0.0     0.0047   16.5   0.0    1.4  1  UvrD-helicase  UvrD/REP helicase N-terminal domain
  ------ inclusion threshold ------
       0.12   12.7   0.0       0.45   10.8   0.0    2.0  2  AAA_22         AAA domain


Domain annotation for each model (and alignments):
>> AAA_19  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.2   0.5   1.4e-09   8.3e-06      13      69 ..       6      69 ..       2     348 .. 0.80

  Alignments for each domain:
  == domain 1  score: 26.2 bits;  conditional E-value: 1.4e-09
      AAA_19 13 llvtaGpGtGKTrvlkhi...vallvelggvkpeeillvaftgrAakelrerlaalgae....a 69
                +++++G GtGKT +  ++   +  l +  g++ +++l+ +ft+r ak+++  l+++ ++     
  KOO24751.1  6 VVIVGGSGTGKTMCALAKaygIVKLARHAGRAHARCLVSTFTRRNAKRIKRLLRSMHVSdffdV 69
                799*********9987651222233344445569****************99998887665553 PP

>> UvrD-helicase  UvrD/REP helicase N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.0   7.9e-07    0.0047      16      67 ..       6      60 ..       3     105 .. 0.77

  Alignments for each domain:
  == domain 1  score: 16.5 bits;  conditional E-value: 7.9e-07
                   EEEEE-TTSSHHHHHHHH...HHHHHHTSSSTGGGEEEEESSHHHHHHHHHHHHH CS
  UvrD-helicase 16 ilveAsAGsGKTfvlaer...ilrlikeeeiepdrilvvTFTnkAaeElkeRiee 67
                   ++++ + G+GKT    ++   i++l ++++    r lv+TFT++ a+ +k  +++
     KOO24751.1  6 VVIVGGSGTGKTMCALAKaygIVKLARHAGRAHARCLVSTFTRRNAKRIKRLLRS 60
                   7899********97655523367777777799999*************9987776 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   7.5e-05      0.45       8      47 ..       6      48 ..       2     103 .. 0.68
   2 ?   -2.2   0.0      0.79   4.7e+03      23      60 ..     305     338 ..     299     385 .. 0.74

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 7.5e-05
      AAA_22  8 lvvtGesGtGKTtllrrlleqldeeakaee.erpevv..fvtl 47
                +v++G sGtGKT+++   ++  ++ a ++  ++++++  ++t 
  KOO24751.1  6 VVIVGGSGTGKTMCALAKAYGIVKLARHAGrAHARCLvsTFTR 48
                69************98888887666555557555554223333 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 0.79
      AAA_22  23 rrlleqldeeakaee..erpevvfvtlpsstsskdllrel 60 
                 r++l+q++      +  e++++++v++ ++ + + +++e 
  KOO24751.1 305 RNYLSQNE------RlrENVDYLRVQAFHPDTKSVIYSEA 338
                 55555553......13368888888888888777777664 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (548 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       431  (0.0240393); expected 358.6 (0.02)
Passed bias filter:                      404  (0.0225333); expected 358.6 (0.02)
Passed Vit filter:                        60  (0.00334653); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.56u 0.25s 00:00:00.81 Elapsed: 00:00:00.44
# Mc/sec: 3704.15
//
Query:       KOO24752.1  [L=421]
Description: transcription factor 25-like protein, partial [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      2e-37  129.1   0.0    2.4e-37  128.8   0.0    1.1  1  Tcf25     Transcriptional repressor TCF25


Domain annotation for each model (and alignments):
>> Tcf25  Transcriptional repressor TCF25
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  128.8   0.0   1.3e-41   2.4e-37       1     273 [.     129     419 ..     129     421 .] 0.87

  Alignments for each domain:
  == domain 1  score: 128.8 bits;  conditional E-value: 1.3e-41
       Tcf25   1 FkfekskeykeaqnlFlqlv.dshDpealinllkkyPYHvdtLLqlsevyresedlevAndlieraLfalerafhisFhenllnltsgeirldyelveN 98 
                 F+f  s ey + q+   +lv  s Dp+ l++ll + P H+ +LLql +v++++++ e A++l++ra+++ e a+ + F +       g +r+  +l  N
  KOO24752.1 129 FEFVWSDEYVRLQRTLESLVlASADPNMLMELLHHEPCHIGALLQLHDVATHTGQVELASELLQRAIWCHEAAVTPGFVNA---WLAGGARMLGSLPAN 224
                 778888999999999987652799******************************************************443...3457899999***** PP

       Tcf25  99 RalflalfrhilslerrgctrTaleiaKlllsldpaeDplgillfiDflalksneye..fLiklseefeiqrvqsvllfelselpnfafslaLalylke 195
                 R +f al+++ + ++rrgc + a+  a lllsld + Dp  i++++D l+l++ e +  +L  l +     +        +  lp+fa+s aLal+ + 
  KOO24752.1 225 RPFFHALHKYTVAVSRRGCPKAAVALASLLLSLDRT-DPTRIRCWLDILCLRASEPArvWLHALESP----E-------ACDRLPGFALSHALALHELA 311
                 *********************************976.****************99753377666655....2.......23457************776 PP

       Tcf25 196 n.......................kkklslsekakeaLqrAllrfPsvlqlLleklnvktt..vkvt..seslfkd...ssessfseeeelellqklYl 264
                                          + +s  +  +++L  All+fP+ l++ l+ +  ++   +k++    ++f +     +++ + +  l+ l +lY 
  KOO24752.1 312 AaaqegapntalahtpfeaaappaGQAPSWADGGRAQLSTALLTFPQLLPTALQACAASSApaTKLAarWRRVFGEvlrTVPNTARPNGTLDHLITLYF 410
                 69*******************99878999*****************************99955333222344555599866677778999999999*** PP

       Tcf25 265 ersnilwke 273
                 er+++lw  
  KOO24752.1 411 ERAAELWAR 419
                 *******76 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (421 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       496  (0.0276647); expected 358.6 (0.02)
Passed bias filter:                      354  (0.0197445); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.26s 00:00:00.75 Elapsed: 00:00:00.42
# Mc/sec: 2999.07
//
Query:       KOO24753.1  [L=771]
Description: phosphatidylinositol -trisphosphate 3-phosphatase TPTe2-like protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    7.9e-09   35.1   6.6    1.2e-08   34.5   6.6    1.2  1  Ion_trans        Ion transport protein
    6.5e-06   26.0   0.0    1.2e-05   25.1   0.0    1.4  1  DSPc             Dual specificity phosphatase, catalytic doma
    4.5e-05   23.6   0.0    9.5e-05   22.6   0.0    1.5  1  PTPlike_phytase  Inositol hexakisphosphate
    7.2e-05   22.5   0.0    0.00011   21.8   0.0    1.2  1  Y_phosphatase    Protein-tyrosine phosphatase
    0.00026   20.7   0.1     0.0036   17.1   0.0    2.2  2  PTEN_C2          C2 domain of PTEN tumour-suppressor protein
     0.0007   19.6   0.0     0.0012   18.9   0.0    1.3  1  Y_phosphatase3   Tyrosine phosphatase family
  ------ inclusion threshold ------
      0.061   12.0   4.0        0.1   11.2   4.0    1.2  1  PKD_channel      Polycystin cation channel
       0.11   12.8   7.9       0.22   11.8   7.9    1.4  1  SCAMP            SCAMP family
       0.11   12.4   0.1       0.11   12.4   0.1    2.5  2  UL42             HCMV UL42
       0.29   11.2   2.0       0.31   11.1   0.1    2.1  2  DUF3043          Protein of unknown function (DUF3043)


Domain annotation for each model (and alignments):
>> Ion_trans  Ion transport protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.5   6.6   6.9e-12   1.2e-08       4     107 ..     110     228 ..     108     242 .. 0.80

  Alignments for each domain:
  == domain 1  score: 34.5 bits;  conditional E-value: 6.9e-12
                 HHHHHHHHHHHHHHHHHCCCSSSSHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHCHSHHHHHHHHHHHHHHHHH............HHHH. CS
   Ion_trans   4 felfilllillncvflaletyfpedelektileilelvftaiftlemllkilalgllikkrYlrdpwnilDflvvlpsllsl............vlse. 89 
                 ++lf l++ ++ +++l +e    +  +   ++ ++ +v++ if+++++++++a+++    + ++++w+++Df+vv +s++ +            v    
  KOO24753.1 110 WQLFLLVVAIIDIAMLFVELNAGPGAM--IPVAVVTFVVLFIFVVDLIIRYYAFRN----KLFSSFWFWFDFFVVAFSIVLFliglgfgstdaeV--Gq 200
                 8999999***********999999443..7999********************999....********************998888777665551..05 PP

                 ..........HHHHHHHHHHHHGGGGGG CS
   Ion_trans  90 ..........esllllsvlrlfrvlrll 107
                              +++ +lr++r +rl+
  KOO24753.1 201 sgstaarggkALRGMIVALRWLRAARLV 228
                 5566676666566667777777776664 PP

>> DSPc  Dual specificity phosphatase, catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.1   0.0   6.8e-09   1.2e-05      52     117 ..     332     400 ..     290     409 .. 0.74

  Alignments for each domain:
  == domain 1  score: 25.1 bits;  conditional E-value: 6.8e-09
                 TSCCGGGHHHHHHHHHHH..HHTT-EEEEEESSSSSHHHHHHHHHHHHHHTS.CHHHHHHHHHHHSTT- CS
        DSPc  52 etkiskyleeavefidka..kqkgkkvlVHCqaGisRSatliiaYlmktknl.slneayeflkerrpai 117
                 ++ + + + + v+f++++  k   ++ ++HC+ G  R++++++a+l++++ + ++++a+ ++  +r  +
  KOO24753.1 332 QDHTPPNMLQFVSFLNSMrhKPASHTLAIHCRGGKGRTGSMCCAWLLYSRAClDADDALTHFALERTEL 400
                 344455566778888888435568899********************9987779****99987777665 PP

>> PTPlike_phytase  Inositol hexakisphosphate
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.6   0.0   5.3e-08   9.5e-05     103     150 ..     327     374 ..     322     379 .. 0.89

  Alignments for each domain:
  == domain 1  score: 22.6 bits;  conditional E-value: 5.3e-08
                      EEEEE-TTS---HHHHHHHHHHHHTS-TT-EEEEE-SSSSHHHHHHHH CS
  PTPlike_phytase 103 aRipitdekapeeedfdalvsilkeapektalvfnCqmGrgRTTtamv 150
                      +R+ i+d++ p+  +f ++++ +++ p +  l ++C+ G+gRT  + +
       KOO24753.1 327 VRFDIQDHTPPNMLQFVSFLNSMRHKPASHTLAIHCRGGKGRTGSMCC 374
                      6999**************************************986543 PP

>> Y_phosphatase  Protein-tyrosine phosphatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.8   0.0   6.3e-08   0.00011     147     231 ..     334     421 ..     330     424 .. 0.80

  Alignments for each domain:
  == domain 1  score: 21.8 bits;  conditional E-value: 6.3e-08
                    SSGSCCHHHHHHHHHHHHHHSTTSS-EEEECSSSSHHHHHHHHHHHHHHHHHHHSE.....EEHHHHHHHHHTTSTTSS-SHHHHHHHHH CS
  Y_phosphatase 147 gvpesaksllklirkvekskeaksgpvvVhCsaGvgRtgtfvaldillqqleaeee.....vdvlqivkelrkqRpgmvqtleqyiflye 231
                     +p++  ++++++++++++    s+ + +hC  G gRtg+++++ +l++++  + +     + + ++  +l k++++ v+t +q  ++++
     KOO24753.1 334 HTPPNMLQFVSFLNSMRHKP--ASHTLAIHCRGGKGRTGSMCCAWLLYSRACLDADdalthFALERTELSLGKKKIQGVDTPSQRRYVHQ 421
                    358899999********999..99*******************99999887664333455566667777888888888888888777765 PP

>> PTEN_C2  C2 domain of PTEN tumour-suppressor protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.1   0.0      0.17   3.1e+02      62      79 ..     557     574 ..     540     584 .. 0.78
   2 !   17.1   0.0     2e-06    0.0036      84     133 ..     630     677 ..     617     679 .. 0.85

  Alignments for each domain:
  == domain 1  score: 1.1 bits;  conditional E-value: 0.17
                 EEEEE-SEEEEEEEEEEE CS
     PTEN_C2  62 krvpveGDvlveflhkds 79 
                  +v v GDv+v ++  d+
  KOO24753.1 557 AGVDVDGDVRVSVFALDD 574
                 46789********98774 PP

  == domain 2  score: 17.1 bits;  conditional E-value: 2e-06
                 -EEEEEEEEEGGGS-TT--EEEEEGGG-BS---G...GGS-TT-EEEEEE CS
     PTEN_C2  84 kekmfrvwfnTsfieknqnvltltkneLDkalkdkadkkfsknfkvelvf 133
                 + + f + f+T+f++ ++  + ++ + +Dka k+ + kk+ ++   +l f
  KOO24753.1 630 SGCKFFLLFHTGFVS-STGEMPVPLKMMDKAFKN-KGKKYRPEGVATLRF 677
                 456899*********.******************.788888887776666 PP

>> Y_phosphatase3  Tyrosine phosphatase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.9   0.0   6.6e-07    0.0012     109     195 ..     341     434 ..     329     442 .. 0.77

  Alignments for each domain:
  == domain 1  score: 18.9 bits;  conditional E-value: 6.6e-07
  Y_phosphatase3 109 ayrkvfealadee...pvlfHCtaGKDRTGvl..aalllsllGvdeedivaDYlltneyleelrerlkakleeellaea...leellsvrpeyle 195
                     ++  +++ +++++   ++ +HC  GK RTG +  a ll+s + +d +d +  ++l ++ l   ++++ + ++   +++    l++ll+++ +yl 
      KOO24753.1 341 QFVSFLNSMRHKPashTLAIHCRGGKGRTGSMccAWLLYSRACLDADDALTHFALERTELSLGKKKI-QGVDTPSQRRYvhqLDALLRAQSAYLT 434
                     566777888883357899************76225688899999**********9999999888888.444444333335678999999988886 PP

>> PKD_channel  Polycystin cation channel
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   4.0   5.8e-05       0.1     211     262 ..     136     187 ..     121     190 .. 0.85

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 5.8e-05
                  HHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHH CS
  PKD_channel 211 lllievvfvvfvlyfvveeilkirkerasylrsvwnlldlaivvlsvvlivl 262
                  ++ + vv  v+++ fvv+ i+++   r + ++s+w   d+++v++s+vl ++
   KOO24753.1 136 MIPVAVVTFVVLFIFVVDLIIRYYAFRNKLFSSFWFWFDFFVVAFSIVLFLI 187
                  444567777888899*********************************9876 PP

>> SCAMP  SCAMP family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   7.9   0.00012      0.22      31     136 ..     101     222 ..      94     235 .. 0.65

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 0.00012
       SCAMP  31 vklayylwlvlvltlvlNiiavlallisgssekkflglailylllftpasfvlwyrplYkafrsdssfnflvfffvfffqlvfsiiqavGip....... 122
                  + ++  w + +++lv+ ii + +l++  ++  +  ++ + ++++++ + fv+     Y afr+ + f+ ++f f ff+ +   +++++G+        
  KOO24753.1 101 ARWMIEGWKWQLFLLVVAIIDIAMLFVELNAGPGA-MIPVAVVTFVVLFIFVVDLIIRYYAFRN-KLFSSFWFWFDFFVVAFSIVLFLIGLGfgstdae 197
                 57778888888999999998777777777664344.5555555577778888999999*****6.5555566666666666666677778555555564 PP

       SCAMP 123 ...........gsglaGlitaislf 136
                            g+ l G+i+a++ +
  KOO24753.1 198 vgqsgstaargGKALRGMIVALRWL 222
                 5545555555556666666666555 PP

>> UL42  HCMV UL42
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.1   6.4e-05      0.11      79     103 ..     103     127 ..      93     132 .. 0.85
   2 ?   -2.7   0.5       3.1   5.5e+03      33      57 ..     472     496 ..     454     511 .. 0.71

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 6.4e-05
        UL42  79 yfdngwkwtfallvvailgiiflav 103
                 ++ +gwkw + llvvai+ i +l v
  KOO24753.1 103 WMIEGWKWQLFLLVVAIIDIAMLFV 127
                 5668***************998876 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 3.1
        UL42  33 ppppppdcspppyrppyclvsspsp 57 
                 p      c  p  rp   lv  p+ 
  KOO24753.1 472 PDGTDGSCRSPNGRPAGSLVRPPAC 496
                 4444556888888888888877753 PP

>> DUF3043  Protein of unknown function (DUF3043)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.1   0.00017      0.31      23     133 ..      60     165 ..      52     170 .. 0.66
   2 ?   -3.2   0.3       4.2   7.5e+03      36      57 ..     436     457 ..     410     463 .. 0.59

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00017
     DUF3043  23 pktrkearkrareaarerrerareamraGderylpardrgpvRryvRDlVDsrrnlgelflplalvvlvlllvslvkvpevqavvsllllvllllvvid 121
                 pk++ e+++   e+ r++r+++ ea++a   ++     r+  R+ +R ++   ++   ++l++a++ +++l+v+l++ p +   v+++++v+l+++v+d
  KOO24753.1  60 PKDEDEEAQL--EELRRKRQEKLEAVQALGGHAA--GKRMTGRQRARWMIEG-WKWQLFLLVVAIIDIAMLFVELNAGPGAMIPVAVVTFVVLFIFVVD 153
                 4444444333..3444444444444444333333..3444445556767754.777778889999888888888889999999**************** PP

     DUF3043 122 gillgrkvkkkv 133
                  i+    +++k+
  KOO24753.1 154 LIIRYYAFRNKL 165
                 **9887777665 PP

  == domain 2  score: -3.2 bits;  conditional E-value: 4.2
     DUF3043  36 aarerrerareamraGderylp 57 
                   r+rr+ a +  ++G+e++  
  KOO24753.1 436 PTRRRRAPASTSDAQGEESATS 457
                 3444455555555555555544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (771 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1009  (0.0562775); expected 358.6 (0.02)
Passed bias filter:                      541  (0.0301746); expected 358.6 (0.02)
Passed Vit filter:                        68  (0.00379274); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.72u 0.27s 00:00:00.99 Elapsed: 00:00:00.45
# Mc/sec: 5123.98
//
Query:       KOO24754.1  [L=791]
Description: fructose- -bisphosphatase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.3e-61  207.4   0.1    3.2e-61  206.1   0.1    1.6  1  FBPase    Fructose-1-6-bisphosphatase, N-terminal domain
      5e-18   65.5   0.4    6.3e-14   52.0   0.4    3.2  1  NPL4      NPL4 family
    1.5e-05   25.4   0.0    0.00013   22.3   0.0    2.4  1  UN_NPL4   Nuclear pore localisation protein NPL4


Domain annotation for each model (and alignments):
>> FBPase  Fructose-1-6-bisphosphatase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  206.1   0.1   5.4e-65   3.2e-61      17     188 ..     476     649 ..     466     650 .. 0.96

  Alignments for each domain:
  == domain 1  score: 206.1 bits;  conditional E-value: 5.4e-65
      FBPase  17 atgeltallsalklalkiisskvrkaelvnllGlagaeNvtGdeqkklDvladeiliealkaseevkvlvSEEeeelivlerekegkyvvafDPlDGSS 115
                   +elt+l++ l+la+k+ s++  ka+++nl+G+ g++N+ Gd+qkklDvl+++i+i+al +s+ ++vlvSEE+ee i++ +e  g+++vafDPlDGSS
  KOO24754.1 476 KDKELTVLMAQLALACKATSRACAKAGIANLFGMYGEQNSSGDDQKKLDVLSNDIFINALLKSGSCCVLVSEENEEPIIVPEELAGRFCVAFDPLDGSS 574
                 4578****************************************************************************9999*************** PP

      FBPase 116 nidtnvsvGtifsiyrkksedeetti.dvlqpGkeqvAAgyvvYGsstmlVltlgaG.vngFtlDpslgefiltk 188
                 nid+nvs Gtif++y++ s+   +t+ d+l++G++ v Agy++YG++t lVl  ++G v+ F lDpslgefi+t+
  KOO24754.1 575 NIDCNVSTGTIFAVYERLSTSPLGTVeDILRTGNDIVVAGYCMYGAATELVLCFKQGkVERFALDPSLGEFIHTH 649
                 ********************9999999*****************************879**************98 PP

>> NPL4  NPL4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.0   0.4   1.1e-17   6.3e-14       1     295 [.     166     426 ..     166     439 .. 0.80

  Alignments for each domain:
  == domain 1  score: 52.0 bits;  conditional E-value: 1.1e-17
        NPL4   1 RlgylyGryekydevPlGikavveaiyEPpqedeldgltlled.eeekevdeiakklglekvGviftDlldagakdgtvlckRhkdsyflsslEvilaa 98 
                 R+gylyGr  + d v     + v++iyEP qe++ + ++ll+d e ++++ ++a++lgl +vGvi                   +  y  + +E++la+
  KOO24754.1 166 RIGYLYGRWVT-DAVTGDEGVQVHTIYEPAQECTSEDVQLLPDaEGDAKLAQVAAMLGLVQVGVIIGH---------------PAREYAFTINEIMLAS 248
                 99******975.5565555678******************87758899****************9642...............234599999******9 PP

        NPL4  99 klqlkhpnvtkysetgkfsskFvtvvvsgde..egeieiesyqvsneaealvradiiepstd.PslayvresseerYvpevfYkkkneyglevkenakP 194
                 +l +     + ++ + +++ +F   v+  ++  +g   +e+yq+  ++++lv+ +  + s++ P +a   +  +  ++ e    +k ++ + +   a+ 
  KOO24754.1 249 QLHA-----AALAADPEHGKRFARPVLRSETeiDGVATVEAYQMTDQCVELVSKEAFSQSKTdPRVAKTAK--DCCFLVEKKEVRKASFEMFI---AR- 336
                 8754.....56788899999**99999776512466789******************99987699886655..55555554444444444433...33. PP

        NPL4 195 alPveyLlvslthgfpkepkplFkkkakfpienRealgelqdlkelakylkssakkeleealsdfHlllylakleils.keelkllleavkekdeekll 292
                        + ++  ++  +p   F   + f+ienR +  e qd +++++yl++++k+ + +++sd H+ll+la+   l+ k++l +l+  v e++ ++l+
  KOO24754.1 337 -------VFDVGRALDGKPFNSF-LGSGFAIENRPT--EPQDAAKMTSYLRNRRKEPFLRTVSDLHFLLFLANF--LDvKSDLPVLCAKVVENKGDELE 423
                 .......36889999999999**.99********96..889******************************864..66578999999999998888877 PP

        NPL4 293 elv 295
                  ++
  KOO24754.1 424 GFQ 426
                 764 PP

>> UN_NPL4  Nuclear pore localisation protein NPL4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.3   0.0   2.2e-08   0.00013       6      78 ..       3      82 ..       1      84 [. 0.74

  Alignments for each domain:
  == domain 1  score: 22.3 bits;  conditional E-value: 2.2e-08
                EEEEEETTEEEEEEE-TTSBHHHHHHHHHHHSS-STTT-EEESSTT.....CGCCCS..SSSSSCCCTCH--TT-EEEEE CS
     UN_NPL4  6 iiRvqSadGikRieisekstlktllekvaeelkfsengfslylern.....kttelv..ssssksvkevglkhGdmlyLk 78
                ++Rv+ +dG+ R++++   tl++   ++++elk++  +  l +  +     k++     s++   ++ +g+  Gdm++L+
  KOO24754.1  3 VLRVRTKDGTERLTVPAGATLGDVRAQIENELKVPRTQATLARSDQagpvaKKGAPFspSDDLLPLSALGVANGDMVFLD 82
                89*********************************999999775441111112222211333345788888888888886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (791 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       487  (0.0271627); expected 358.6 (0.02)
Passed bias filter:                      456  (0.0254337); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.69u 0.24s 00:00:00.93 Elapsed: 00:00:00.42
# Mc/sec: 5644.50
//
Query:       KOO24755.1  [L=447]
Description: ll-diaminopimelate aminotransferase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.4e-33  116.6   0.0    2.9e-33  115.5   0.0    1.5  1  Aminotran_1_2  Aminotransferase class I and II
     0.0014   17.6   0.0     0.0042   16.0   0.0    1.7  1  Alliinase_C    Allinase


Domain annotation for each model (and alignments):
>> Aminotran_1_2  Aminotransferase class I and II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  115.5   0.0   3.2e-37   2.9e-33       2     362 ..      71     440 ..      70     441 .. 0.85

  Alignments for each domain:
  == domain 1  score: 115.5 bits;  conditional E-value: 3.2e-37
                    EEEESSSSSTTSTTSSHHHHHHHHHHHH...HHHHHTSTTST-BTTHHHHHHHHHHHHHCTCTTCHTTGGEGEEEESHHHHHHHHHHHHHHHTTT- CS
  Aminotran_1_2   2 dvinLgsneylgdsgkptlpevakaeke...galaggtlneygpidglpeleealakflgrseklklkreaavvvgsGagaliealifllklnpgd 94 
                    ++i Lg+++ +      ++++++   k     ++ +++++ ygp +g ++l++++ak l      k++++ +v v+ G++  i  l +++    ++
     KOO24755.1  71 PIISLGIGDTTLP----VPEHILNGLKAgaaKLGTKEGYTGYGPEQGIAQLRSKIAKNLY---DDKIDPS-EVFVSDGSKCDIGRLQMMFG--SST 156
                    5788999999887....555555444446667899999*******************999...6789999.*********99999999998..999 PP

                    EEEEEESS-THHHHHHHHTTSE.EEEEEBEET........TTTEE-HHHHHHHHTTHHCTTETEEEEEEESS-TTT--B--HHHHHHHHHHHHHTT CS
  Aminotran_1_2  95 eilvpdptyasyknilrlsgge.vvryplyse........edfhldlealeealkeapegnkktkvilvesphNPtGtvatleeleklldlakkyn 181
                    +  v dp+y+ y +   ++g + ++  + ++         +  ++ + +l++     p    +  +i+++sp+NPtG++a++++l++l++ a+k +
     KOO24755.1 157 KTAVQDPSYPVYVDTSVIMGQTgLMNQERKQYenivympcNPGNNWFPDLKN----TP----RADIIYFCSPNNPTGAAASRAQLTELVNWANKMG 244
                    ************9877777666566555333344554444444444555555....22....4569****************************** PP

                    EEEEEEETTTTCBSSSSHTHHHHGGSTTSTT.EEEEEESSSTTSSGGG-EEEEEEEH.........HHHHHHHHHHHHHTS.SHHHHHHHHHHHHH CS
  Aminotran_1_2 182 lllfvDeaYagfvfgsldavatranveeepn.llivgslsKafGlaGeRvGyilgna.........avvsqlrklsrpfls.ssllqaavaaalsd 266
                     ++++D aYa f    +d+ + ++++  +    + v+s+sK  G +G R+G++++ +           +++ r++ ++f+  s+++q  v+aal+ 
     KOO24755.1 245 SIIVFDAAYAPFIRS-PDVPKSIFEIPGARTcSIEVNSFSKYAGFTGVRLGWTVVPKeltfadgspVAADYNRIMCTAFNGaSNIVQSGVLAALDP 339
                    **************9.666555666666666789*********************777********99***************************9 PP

                    HHHHHH....HHHHHHHHHHHHHHHHHHHHHHSTEEEECCSCSSEEEEEETHHCHHHHHHHHHHTCTEEEEEGGGGTS..TTEEEEECTTS-HHHH CS
  Aminotran_1_2 267 allkqs....eleemrqrlqkrrkelrdeLaelglkvlasqsgmflltdlsaetakelskkLleevgvyvtpgtsftv..pgrlRitvAglteeel 356
                    + l +     e++ m + + ++++ l++ + ++g +v + +++ + +++l+ ++  +++ k+l e  v+ +pg  f+   +g+lR++    +++ +
     KOO24755.1 340 EGLAEIkalaEIKVMIDYYMENARILKETMLDIGMEVHGGDNAPYIFVGLKGQSSWDMFSKILSEAQVVTIPGAGFGPggEGFLRLSA-FAPRDSC 434
                    9876558999*******************************************9999******************************9.5555556 PP

                    HHHHHH CS
  Aminotran_1_2 357 eelvea 362
                     e++++
     KOO24755.1 435 IEACKR 440
                    666655 PP

>> Alliinase_C  Allinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.0   4.7e-07    0.0042     134     210 ..     208     300 ..     163     307 .. 0.71

  Alignments for each domain:
  == domain 1  score: 16.0 bits;  conditional E-value: 4.7e-07
                  S..S-EEEEEESS-TTT---..-----......-TT-EEEEEE-TT-....STT....TS---S-B--SEEEEEHHHHHS-GGG-EEEEEES- CS
  Alliinase_C 134 knpeefielvtsPnnPdgll..reavv......kgseakviyDlayY....WPh....ytpitskadedimLftlskltGhaGsrlGWalvkd 210
                  ++p+  i    sPnnP g+   r ++       ++  +++++D ay      P+      +i  +    i + ++sk++G +G rlGW++v  
   KOO24755.1 208 NTPRADIIYFCSPNNPTGAAasRAQLTelvnwaNKMGSIIVFDAAYApfirSPDvpksIFEIPGARTCSIEVNSFSKYAGFTGVRLGWTVVPK 300
                  45666677789*****99642122222333575566667788888742222232111234688888999********************9954 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (447 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       264  (0.0147247); expected 358.6 (0.02)
Passed bias filter:                      261  (0.0145574); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.49u 0.27s 00:00:00.76 Elapsed: 00:00:00.41
# Mc/sec: 3290.74
//
Query:       KOO24756.1  [L=137]
Description: hypothetical protein Ctob_003436 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (137 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       270  (0.0150594); expected 358.6 (0.02)
Passed bias filter:                      255  (0.0142228); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.23s 00:00:00.57 Elapsed: 00:00:00.36
# Mc/sec: 1136.97
//
Query:       KOO24757.1  [L=304]
Description: alpha-1,3-mannosyl-glycoprotein 4-beta-n- family gt54 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (304 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       539  (0.030063); expected 358.6 (0.02)
Passed bias filter:                      402  (0.0224218); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.44u 0.28s 00:00:00.72 Elapsed: 00:00:00.42
# Mc/sec: 2155.14
//
Query:       KOO24758.1  [L=167]
Description: hypothetical protein Ctob_003442 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
  ------ inclusion threshold ------
       0.01   14.5   1.0     0.0091   14.6   1.0    1.1  1  Glyco_transf_18  Glycosyltransferase family 18


Domain annotation for each model (and alignments):
>> Glyco_transf_18  Glycosyltransferase family 18
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.6   1.0   5.1e-07    0.0091     472     558 .]      72     162 ..       9     162 .. 0.85

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 5.1e-07
  Glyco_transf_18 472 vlkaeegqsCkeaCqekelvCepaffkllnkkealarlevkcestesevnh....l....fPaysekereCllqsdalLfsCagseeklrrlCP 557
                      v++a++   C+++C +++  C  +  +++n  ++l+   +kc++ e +       l    +Pa ++k r Cl+ ++a    C g ++ ++rlC 
       KOO24758.1  72 VFVAKQSADCEATCAASGKRCSEEGLRAINVCSELE-KYLKCQGCEVSFGAdqpaLvsedAPA-ESKPRMCLVNTEAP--TCLGFHKLTTRLCA 161
                      778899999**************************5.56788666655443000132222455.56678999999985..8************9 PP

  Glyco_transf_18 558 C 558
                      C
       KOO24758.1 162 C 162
                      9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (167 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       673  (0.037537); expected 358.6 (0.02)
Passed bias filter:                      402  (0.0224218); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.25s 00:00:00.65 Elapsed: 00:00:00.41
# Mc/sec: 1233.88
//
Query:       KOO24759.1  [L=192]
Description: hypothetical protein Ctob_003441 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    7.6e-38  129.6   0.0      1e-37  129.2   0.0    1.1  1  DUF3119   Protein of unknown function (DUF3119)


Domain annotation for each model (and alignments):
>> DUF3119  Protein of unknown function (DUF3119)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  129.2   0.0   5.6e-42     1e-37       3     124 ..      30     187 ..      29     189 .. 0.90

  Alignments for each domain:
  == domain 1  score: 129.2 bits;  conditional E-value: 5.6e-42
     DUF3119   3 lepsyrlplvllllglallll..........qlvlgllvallglfllvQtvrlrlqfteealevvrv...dsgenvirGgenrfpydsfvnweiffpsv 88 
                 ++psy l+++ +llg  + l+             lg+l+a++glf+++Qt++lr++f+e+++ +v+    ++genv++Ggen ++yd+fvnw++ fps 
  KOO24759.1  30 INPSYDLAIGSVLLGGVFGLPsrapslasraGYALGALCAVFGLFIAFQTTTLRFTFDETSFALVKAdgsSTGENVVVGGENVWRYDEFVNWDF-FPSE 127
                 89*************8888886666555544444********************************999999**********************.5554 PP

     DUF3119  89 ..PiLvYFketqskp......................eGqiHflPilfdakqLkeeleer 124
                   PiLvYFketq+ +                      +Gq+Hf+P+++ +++Lk+ ++++
  KOO24759.1 128 sfPILVYFKETQTPEqfwnvgpgeqanspealargakPGQVHFFPAIARVDELKASFKTH 187
                 46***********448****************************************9976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (192 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       316  (0.0176251); expected 358.6 (0.02)
Passed bias filter:                      269  (0.0150036); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.24s 00:00:00.65 Elapsed: 00:00:00.42
# Mc/sec: 1388.01
//
Query:       KOO24760.1  [L=95]
Description: hypothetical protein Ctob_003440 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
     0.0062   15.9   0.2     0.0076   15.6   0.2    1.1  1  RNA_pol_Rpb1_1  RNA polymerase Rpb1, domain 1


Domain annotation for each model (and alignments):
>> RNA_pol_Rpb1_1  RNA polymerase Rpb1, domain 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.2   4.2e-07    0.0076      56      83 ..      59      95 .]      49      95 .] 0.76

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 4.2e-07
                    TSTTTSSTTTT---..........--EEEEEECEEE-H CS
                    xxxxxxxxxxxxxx..........xxxxxxxxxxxxxx RF
  RNA_pol_Rpb1_1 56 eCetCgkkkkeCeg..........hfGhieLakPvfhi 83
                    +C tC   ++              hfGh+eL+kP++h+
      KOO24760.1 59 TC-TCRSARAAHRAvirgyhlhppHFGHLELTKPMYHV 95
                    56.777666633335677888888*************7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (95 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       265  (0.0147805); expected 358.6 (0.02)
Passed bias filter:                      187  (0.01043); expected 358.6 (0.02)
Passed Vit filter:                         9  (0.00050198); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.23s 00:00:00.59 Elapsed: 00:00:00.39
# Mc/sec: 725.17
//
Query:       KOO24761.1  [L=180]
Description: amp deaminase 2 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.1e-05   25.0   0.0    1.4e-05   24.6   0.0    1.2  1  A_deaminase  Adenosine/AMP deaminase


Domain annotation for each model (and alignments):
>> A_deaminase  Adenosine/AMP deaminase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.6   0.0   7.6e-10   1.4e-05     287     327 ..       7      47 ..       1      48 [. 0.95

  Alignments for each domain:
  == domain 1  score: 24.6 bits;  conditional E-value: 7.6e-10
                  HHHHHHHHHHHT--HHHHHHHHHHHHHCSSS-HHHHHHHCH CS
  A_deaminase 287 ieeYaiaaqvfklseedlaelarNsvkqsflsadekkklld 327
                  +eeY  a++++ l+  dl e+arNsv+ s + ++ +++l++
   KOO24761.1   7 MEEYITAKHAWSLTMTDLSEIARNSVLISSARHELREELIG 47 
                  89************************************997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (180 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       327  (0.0182386); expected 358.6 (0.02)
Passed bias filter:                      281  (0.0156729); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.35u 0.24s 00:00:00.59 Elapsed: 00:00:00.37
# Mc/sec: 1474.47
//
Query:       KOO24762.1  [L=995]
Description: actin binding [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.4e-59  198.5   0.0    8.7e-20   71.5   0.0    7.4  7  Filamin        Filamin/ABP280 repeat
      2e-19   69.7   1.5    0.00049   20.4   0.0    6.2  7  Invasin_D3     Invasin, domain 3
      6e-05   23.6   0.2       0.14   12.8   0.0    3.4  3  YtkA           YtkA-like
    0.00044   20.5   0.0     0.0013   18.9   0.0    1.9  1  SH3_3          Bacterial SH3 domain
     0.0025   17.8   0.2        1.4    8.9   0.0    3.9  4  Y_Y_Y          Y_Y_Y domain
  ------ inclusion threshold ------
      0.034   14.0   0.0        1.4    8.8   0.0    3.5  4  BclA_C         BclA C-terminal domain
      0.098   13.0   0.0         17    5.8   0.0    3.8  4  PCC_BT         Propionyl-coenzyme A carboxylase BT domain
       0.15   11.5   0.1          2    7.8   0.0    2.2  2  Neurexophilin  Neurexophilin
       0.16   11.5   0.0       0.31   10.6   0.0    1.3  1  DUF1933        Domain of unknown function (DUF1933)
        4.6    7.4   4.8         26    5.0   0.2    3.4  4  DUF5011        Domain of unknown function (DUF5011)


Domain annotation for each model (and alignments):
>> Filamin  Filamin/ABP280 repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   71.5   0.0   4.9e-23   8.7e-20       3     102 ..       3      94 ..       1      95 [. 0.94
   2 !   10.4   0.0    0.0005       0.9       2      48 ..     103     147 ..     102     254 .. 0.82
   3 !   12.2   0.0   0.00014      0.25      70     103 .]     502     537 ..     423     537 .. 0.92
   4 !   24.2   0.0   2.5e-08   4.5e-05      18     102 ..     562     639 ..     542     640 .. 0.86
   5 !   17.3   0.0   3.6e-06    0.0065       2      93 ..     648     752 ..     647     768 .. 0.71
   6 !   25.4   0.0   1.1e-08   1.9e-05      15     102 ..     792     873 ..     772     874 .. 0.85
   7 !   27.7   0.0   2.1e-09   3.8e-06       6      97 ..     886     968 ..     881     971 .. 0.89

  Alignments for each domain:
  == domain 1  score: 71.5 bits;  conditional E-value: 4.9e-23
                 STTSEEEESGGGTEEETTS-EEEEEEESSSTSCCCSTTS..EEEEE..ESSTS.....EEEEEEEE-SSSEEEEEE--SSSCEEEEEEEETTCE-TTSS CS
     Filamin   3 dpskskvnGpGieasvagesltFtvytkdakgeksevggdelqvrivtgsphgaatkssvkievvdnedgtytvsYtpeepgtyrvsvkldgkhiggsP 101
                  +++++v+G+G++ + a +s++Ft++++da+g + + ggd + v i  ++++      +v+++v dnedg+y+v+Y+p+++g y vsv+l+g + + sP
  KOO24762.1   3 VARMCVVSGDGLHLAMARQSASFTIEARDAEGVRQQAGGDVFMVAI--RGSS------KVNAKVADNEDGSYKVEYKPSTSGSYAVSVSLNGVPLPDSP 93 
                 689*******************************************..5552......46788************************************ PP

                 E CS
     Filamin 102 f 102
                 f
  KOO24762.1  94 F 94 
                 9 PP

  == domain 2  score: 10.4 bits;  conditional E-value: 0.0005
                 CSTTSEEEESGGGTEEETTS-EEEEEEESSSTSCCCSTTS..EEEEE CS
     Filamin   2 vdpskskvnGpGieasvagesltFtvytkdakgeksevggdelqvri 48 
                  d+ ++++ G+ + ++ a e +tF+++  +a g++ +   +e++v +
  KOO24762.1 103 PDAVRCVLRGDALTKASARELATFEIEFMNAMGQPARA--EEIDVWV 147
                 699**********9999*****************7665..6777655 PP

  == domain 3  score: 12.2 bits;  conditional E-value: 0.00014
                 SSSEEEEEE--SSSCEEEEEEEETTCE-..TTSSEE CS
     Filamin  70 edgtytvsYtpeepgtyrvsvkldgkhi..ggsPfd 103
                 +  t+t+sY + ++g y+++v l+++ i  +gsPfd
  KOO24762.1 502 NVKTHTASYSIGAAGHYKLHVGLRNQAIalPGSPFD 537
                 55799********************965338***97 PP

  == domain 4  score: 24.2 bits;  conditional E-value: 2.5e-08
                 ETT.S-E.EEEEEESSSTSCCCSTTS..EEEEE..ESSTS.....EEEEEEEE-SSSEEEEEE--SSSCEEEEEEEETTCE-TTSSE CS
     Filamin  18 vag.esl.tFtvytkdakgeksevggdelqvrivtgsphgaatkssvkievvdnedgtytvsYtpeepgtyrvsvkldgkhiggsPf 102
                 v+g ++  t t ++ d  g++++ g+ ++ v+   g++        v ++++dnedg+yt +++ + +g +r +v++dg h+ gsP 
  KOO24762.1 562 VVGdDWScTCTLHAADRMGNRCTAGKAKIVVDC--GKD-------PVATRCTDNEDGSYTLQWKGKVAGLFRTQVRIDGAHVIGSPL 639
                 55544445889999***********99999999..555.......45678************************************6 PP

  == domain 5  score: 17.3 bits;  conditional E-value: 3.6e-06
                 CSTTSEEEESGGGTEEETTS-EEEEEEESSSTSCCCSTTS..EE.......EEE....ESSTS................EEEEEEEE-SSSEEEEEE-- CS
     Filamin   2 vdpskskvnGpGieasvagesltFtvytkdakgeksevggdelq.......vriv..tgsphgaatks...........svkievvdnedgtytvsYtp 80 
                  d  k+ + G+G++++vag+++ +++ +kd   +++    d lq       +       + +g+a +                + +d e + +++ Yt+
  KOO24762.1 648 PDITKCEIAGSGLRNAVAGQQALVQITCKDRFANPLSA--DSLQgaslsfgL--AliLPGAEGKAASAtvesmpfeggwV---KSTDVEGQCFEIAYTA 739
                 6899*************************999997775..677764444443..14445555554442333333332220...48999999******** PP

                 SSSCEEEEEEEET CS
     Filamin  81 eepgtyrvsvkld 93 
                 +e+g++ + v +d
  KOO24762.1 740 KEAGDFDLYVWCD 752
                 ********99997 PP

  == domain 6  score: 25.4 bits;  conditional E-value: 1.1e-08
                 TEEETTS-EEEEEEESSSTSCCCSTTS..EEEEE..ESSTS.....EEEEE.EEE-SSSEEEEEE--SSSCEEEEEEEETTCE-TTSSE CS
     Filamin  15 easvagesltFtvytkdakgeksevggdelqvrivtgsphgaatkssvkie.vvdnedgtytvsYtpeepgtyrvsvkldgkhiggsPf 102
                 ++ +age +  + +++d+ g+ s   + ++qv i  + p+g       k++  + ++ g y+vsY ++ +g+++++  l+g+hi+gsP 
  KOO24762.1 792 NTMTAGETVILKPQLRDQFGNASSAAEGDFQVFI--EAPDGM-----HKVNhRSLKGLGAYEVSYEVQIKGKHQMQFLLRGEHIQGSPV 873
                 44478888888889**********9999******..*****8.....355536677789*****************************6 PP

  == domain 7  score: 27.7 bits;  conditional E-value: 2.1e-09
                 SEEEESGGGTEEETTS-EEEEEEESSSTSCCCSTTS..EEEEE..ESSTS.....EEEEEEEE-SSSEEEEEE--SSSCEEEEEEEETTCE- CS
     Filamin   6 kskvnGpGieasvagesltFtvytkdakgeksevggdelqvrivtgsphgaatkssvkievvdnedgtytvsYtpeepgtyrvsvkldgkhi 97 
                 k++++ p +e+ +++++ ++  ++ d +g+k+  gg++++ r   ++p  +       +  +d+++gty +++ ++ +g++rv+v++d+ + 
  KOO24762.1 886 KCRLF-PPVEPPIIKQPCEIMLEAIDRYGNKLDRGGQRIDARA--NGPGVS------GCTTDDKGNGTYIITFSAAVVGECRVTVRVDNVEM 968
                 66664.4569999******************************..999665......689****************************9765 PP

>> Invasin_D3  Invasin, domain 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.4   0.0   2.7e-07   0.00049      21      86 ..      22      90 ..      15      99 .. 0.79
   2 ?   -1.9   0.4       2.3   4.2e+03      29      37 ..     157     165 ..     153     231 .. 0.62
   3 ?   -3.7   0.0       8.5   1.5e+04      30      54 ..     343     368 ..     342     375 .. 0.52
   4 !   18.0   0.0   1.5e-06    0.0026      23      94 ..     570     644 ..     564     646 .. 0.82
   5 ?    1.3   0.0      0.24   4.3e+02      20      41 ..     667     688 ..     662     715 .. 0.79
   6 ?    3.5   0.0      0.05        90      21      83 ..     799     867 ..     791     880 .. 0.71
   7 !   18.7   0.0   8.9e-07    0.0016      24      84 ..     904     967 ..     899     977 .. 0.77

  Alignments for each domain:
  == domain 1  score: 20.4 bits;  conditional E-value: 2.7e-07
  Invasin_D3 21 tstltvtlkDangnp..vsgltvtfsttsag.tlsavtdngdGtytatLtattagtatitptvnGvaia 86
                ++  t+ ++Da+g    ++g+   ++ + +  +  +v dn+dG y+++ + +t+g++ +++++nGv   
  KOO24762.1 22 SASFTIEARDAEGVRqqAGGDVFMVAIRGSSkVNAKVADNEDGSYKVEYKPSTSGSYAVSVSLNGVPLP 90
                56789********9986666664444442233567899***************************7655 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 2.3
  Invasin_D3  29 kDangnpvs 37 
                 kDa+gnp+ 
  KOO24762.1 157 KDADGNPLP 165
                 777777743 PP

  == domain 3  score: -3.7 bits;  conditional E-value: 8.5
  Invasin_D3  30 Dangnp..vsgltvtfstt.sagtlsav 54 
                 Da+g p  +s +  +f++t s    s++
  KOO24762.1 343 DAFGMPlpTSTERAHFASTrS-N-ASTA 368
                 777777545555577777732.2.2222 PP

  == domain 4  score: 18.0 bits;  conditional E-value: 1.5e-06
  Invasin_D3  23 tltvtlkDangnpvsgltvtfsttsag...tlsavtdngdGtytatLtattagtatitptvnG.vaiaatatvtlt 94 
                 t t+ + D  gn  +  + ++  +  g   + +  tdn+dG yt + +++ ag    ++ ++G  +i+++ ++++ 
  KOO24762.1 570 TCTLHAADRMGNRCTAGKAKIVVD-CGkdpVATRCTDNEDGSYTLQWKGKVAGLFRTQVRIDGaHVIGSPLNIKMH 644
                 6899*********66666677766.444468899*****************************8777777777665 PP

  == domain 5  score: 1.3 bits;  conditional E-value: 0.24
  Invasin_D3  20 ststltvtlkDangnpvsgltv 41 
                 +++++++t kD + np+s ++ 
  KOO24762.1 667 QQALVQITCKDRFANPLSADSL 688
                 56789***********776653 PP

  == domain 6  score: 3.5 bits;  conditional E-value: 0.05
  Invasin_D3  21 tstltvtlkDangnpvsgltvtfstt...sag..tlsavtdngdGtytatLtattagtatitptvnG.v 83 
                 t  l+ +l+D++gn+ s ++  f+      +g  +++  + +g G y++    + +g+ + ++ + G  
  KOO24762.1 799 TVILKPQLRDQFGNASSAAEGDFQVFieaPDGmhKVNHRSLKGLGAYEVSYEVQIKGKHQMQFLLRGeH 867
                 6778889********666665555222235777777777788889999988888888888888888843 PP

  == domain 7  score: 18.7 bits;  conditional E-value: 8.9e-07
  Invasin_D3  24 ltvtlkDangnp..vsgltvtfsttsag.tlsavtdngdGtytatLtattagtatitptvnGva 84 
                 + + + D  gn    +g+ +   ++  g +  + +d+g+Gty+ t++a+ +g+  +t+ v++v+
  KOO24762.1 904 IMLEAIDRYGNKldRGGQRIDARANGPGvSGCTTDDKGNGTYIITFSAAVVGECRVTVRVDNVE 967
                 56778899999975566778888774443333566999**********************9843 PP

>> YtkA  YtkA-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.8   0.0   7.8e-05      0.14      45      85 ..      44      82 ..      32      83 .. 0.84
   2 ?   -3.4   0.0         9   1.6e+04      61      82 ..     603     624 ..     597     627 .. 0.70
   3 !    6.7   0.0    0.0062        11      18      84 ..     795     860 ..     789     861 .. 0.77

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 7.8e-05
        YtkA 45 wmpameGmeemttkvelkesedGvYeaevnfsmeGtWqvql 85
                +m a  G +  ++++++ + edG Y++e++ s +G + v++
  KOO24762.1 44 FMVAIRGSS--KVNAKVADNEDGSYKVEYKPSTSGSYAVSV 82
                566656666..578888889******************997 PP

  == domain 2  score: -3.4 bits;  conditional E-value: 9
        YtkA  61 lkesedGvYeaevnfsmeGtWq 82 
                 +++ edG Y ++ + + +G  +
  KOO24762.1 603 CTDNEDGSYTLQWKGKVAGLFR 624
                 5677999999887766666655 PP

  == domain 3  score: 6.7 bits;  conditional E-value: 0.0062
        YtkA  18 kagentivv.t.vtqggkpVedadvkvefwmpameGmeemttkvelkesedGvYeaevnfsmeGtWqvq 84 
                 +age+ i   + ++q g++ ++a+ +++++ +a++Gm++   + +l  ++ G Ye+ +    +G+ q+q
  KOO24762.1 795 TAGETVILKpQlRDQFGNASSAAEGDFQVFIEAPDGMHK-VNHRSL--KGLGAYEVSYEVQIKGKHQMQ 860
                 56666554444588888888999999************5.344444..47**************99887 PP

>> SH3_3  Bacterial SH3 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.9   0.0   7.5e-07    0.0013       3      31 ..     276     304 ..     274     337 .. 0.89

  Alignments for each domain:
  == domain 1  score: 18.9 bits;  conditional E-value: 7.5e-07
       SH3_3   3 lnvRsgPstssevigtlpyGekVevleet 31 
                 l +Rs+++++s+v+++l +G+ V+v+ee+
  KOO24762.1 276 LIMRSEARLDSPVVTVLAPGQLVTVIEER 304
                 789************************96 PP

>> Y_Y_Y  Y_Y_Y domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.5   0.1      0.16   2.9e+02      26      45 ..      63      82 ..      52      85 .. 0.76
   2 ?    1.8   0.0      0.13   2.4e+02      29      45 ..     504     522 ..     491     528 .. 0.82
   3 ?   -3.5   0.0       5.9   1.1e+04      36      44 ..     606     614 ..     604     618 .. 0.75
   4 !    8.9   0.0    0.0008       1.4      16      49 ..     717     752 ..     715     759 .. 0.88

  Alignments for each domain:
  == domain 1  score: 1.5 bits;  conditional E-value: 0.16
                STS.EEEEES--SEEEEEEE CS
       Y_Y_Y 26 dysqeasytnlppGdYtlkV 45
                d s++++y++  +G+Y + V
  KOO24762.1 63 DGSYKVEYKPSTSGSYAVSV 82
                33339***********9877 PP

  == domain 2  score: 1.8 bits;  conditional E-value: 0.13
                 ...EEEEES--SEEEEEEE CS
       Y_Y_Y  29 q..easytnlppGdYtlkV 45 
                 +  +asy+   +G+Y+l+V
  KOO24762.1 504 KthTASYSIGAAGHYKLHV 522
                 24589************99 PP

  == domain 3  score: -3.5 bits;  conditional E-value: 5.9
                 --SEEEEEE CS
       Y_Y_Y  36 lppGdYtlk 44 
                 ++ G+Ytl+
  KOO24762.1 606 NEDGSYTLQ 614
                 6789***98 PP

  == domain 4  score: 8.9 bits;  conditional E-value: 0.0008
                 TTESSEEEESSTS....EEEEES--SEEEEEEEEEEE CS
       Y_Y_Y  16 gidkeWveasdysq...easytnlppGdYtlkVkakd 49 
                 ++++ Wv+++d      e+ yt +++Gd+ l+V + d
  KOO24762.1 717 PFEGGWVKSTDVEGqcfEIAYTAKEAGDFDLYVWC-D 752
                 58899******9778******************98.4 PP

>> BclA_C  BclA C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.8   0.0    0.0008       1.4      43      77 ..      61      93 ..      48     122 .. 0.84
   2 ?   -0.8   0.0      0.75   1.3e+03      41      79 ..     604     640 ..     588     672 .. 0.79
   3 ?   -1.9   0.0       1.6     3e+03      46      56 ..     843     853 ..     838     878 .. 0.79
   4 ?   -1.8   0.0       1.5   2.8e+03      46      65 ..     943     962 ..     941     968 .. 0.70

  Alignments for each domain:
  == domain 1  score: 8.8 bits;  conditional E-value: 0.0008
      BclA_C 43 neaGrYyisYqvnttaallvslrllvngvavpgst 77
                ne G Y+++Y+  t+ + +vs++  +ngv++p s 
  KOO24762.1 61 NEDGSYKVEYKPSTSGSYAVSVS--LNGVPLPDSP 93
                899**************998865..6999999884 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 0.75
      BclA_C  41 tvneaGrYyisYqvnttaallvslrllvngvavpgstvt 79 
                 t ne G Y ++++    +a l+++++ ++g+ v gs ++
  KOO24762.1 604 TDNEDGSYTLQWK--GKVAGLFRTQVRIDGAHVIGSPLN 640
                 5567777776654..456679999******999998554 PP

  == domain 3  score: -1.9 bits;  conditional E-value: 1.6
      BclA_C  46 GrYyisYqvnt 56 
                 G Y++sY+v+ 
  KOO24762.1 843 GAYEVSYEVQI 853
                 99*****9986 PP

  == domain 4  score: -1.8 bits;  conditional E-value: 1.5
      BclA_C  46 GrYyisYqvnttaallvslr 65 
                 G+Y i++++       v++r
  KOO24762.1 943 GTYIITFSAAVVGECRVTVR 962
                 88888888776666555555 PP

>> PCC_BT  Propionyl-coenzyme A carboxylase BT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.0         5     9e+03      36      40 ..      46      50 ..      17      82 .. 0.51
   2 ?    1.4   0.0      0.22   3.9e+02      57      89 ..     268     300 ..     243     306 .. 0.90
   3 ?    5.8   0.0    0.0093        17      74     107 ..     586     619 ..     578     628 .. 0.84
   4 ?   -0.6   0.0      0.87   1.6e+03      19      63 ..     806     856 ..     803     877 .. 0.68

  Alignments for each domain:
  == domain 1  score: -3.0 bits;  conditional E-value: 5
      PCC_BT 36 vtvdg 40
                v + g
  KOO24762.1 46 VAIRG 50
                22322 PP

  == domain 2  score: 1.4 bits;  conditional E-value: 0.22
      PCC_BT  57 evkvdgksvkvssdwklgqplirgtvdgesvtv 89 
                 +v+v+ k++ ++s+ +l +p++++   g+ vtv
  KOO24762.1 268 RVQVGDKPLIMRSEARLDSPVVTVLAPGQLVTV 300
                 78999******************9999998887 PP

  == domain 3  score: 5.8 bits;  conditional E-value: 0.0093
      PCC_BT  74 gqplirgtvdgesvtvqvlskkaggfrLqykGtk 107
                 g+  i + +++ +v++++++++ g+++Lq+kG +
  KOO24762.1 586 GKAKIVVDCGKDPVATRCTDNEDGSYTLQWKGKV 619
                 556677788999******9999999*******75 PP

  == domain 4  score: -0.6 bits;  conditional E-value: 0.87
      PCC_BT  19 isnqlrtkeakeekdwvvtvdgedetvtvkve......eaadevevkvdgk 63 
                 +++q  + + ++e d++v+++  d  ++v+ +        + ++ev+++gk
  KOO24762.1 806 LRDQFGNASSAAEGDFQVFIEAPDGMHKVNHRslkglgAYEVSYEVQIKGK 856
                 566667788888999999999988888887653322212223455555554 PP

>> Neurexophilin  Neurexophilin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.8   0.0    0.0011         2      76     107 ..      53      84 ..      32      90 .. 0.90
   2 ?    0.7   0.0      0.17     3e+02      83     106 ..     939     962 ..     930     976 .. 0.88

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 0.0011
  Neurexophilin  76 livGkvvDhgnGtfsvffrhnstGqgnvsvsL 107
                     +  kv D ++G+++v ++  ++G   vsvsL
     KOO24762.1  53 KVNAKVADNEDGSYKVEYKPSTSGSYAVSVSL 84 
                    56789**************************9 PP

  == domain 2  score: 0.7 bits;  conditional E-value: 0.17
  Neurexophilin  83 DhgnGtfsvffrhnstGqgnvsvs 106
                    D gnGt+ + f     G+ +v+v 
     KOO24762.1 939 DKGNGTYIITFSAAVVGECRVTVR 962
                    89****************999985 PP

>> DUF1933  Domain of unknown function (DUF1933)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0   0.00017      0.31      83     111 ..     805     832 ..     791     845 .. 0.82

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00017
     DUF1933  83 lirdklGsailslaeGdyclfiedkkGtl 111
                 + rd++G+a  s aeGd+ +fie  +G  
  KOO24762.1 805 QLRDQFGNAS-SAAEGDFQVFIEAPDGMH 832
                 789*****86.89**********988865 PP

>> DUF5011  Domain of unknown function (DUF5011)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.0   0.2     0.015        26      36      60 ..      53      77 ..      40      83 .. 0.83
   2 ?   -3.3   0.0       5.7     1e+04      19      41 ..     597     619 ..     586     620 .. 0.60
   3 ?    2.3   0.0      0.11   1.9e+02      46      60 ..     842     856 ..     832     861 .. 0.81
   4 ?   -1.2   0.0       1.2   2.2e+03      42      56 ..     938     952 ..     932     962 .. 0.77

  Alignments for each domain:
  == domain 1  score: 5.0 bits;  conditional E-value: 0.015
                EEES---TTS-EEEEEEEEEE-TTS CS
     DUF5011 36 kvtgsVdtskvGtYtitYtvtdssg 60
                kv+ +V  ++ G+Y++ Y+ + s  
  KOO24762.1 53 KVNAKVADNEDGSYKVEYKPSTSGS 77
                68889999**********9886655 PP

  == domain 2  score: -3.3 bits;  conditional E-value: 5.7
                 ---EEEEETTEE-GGG-EEES-- CS
     DUF5011  19 epGatatdddgditskvkvtgsV 41 
                 +p at   d++d + +++ +g+V
  KOO24762.1 597 DPVATRCTDNEDGSYTLQWKGKV 619
                 56666666666666666666665 PP

  == domain 3  score: 2.3 bits;  conditional E-value: 0.11
                 -EEEEEEEEEE-TTS CS
     DUF5011  46 vGtYtitYtvtdssg 60 
                 +G Y++ Y+v+ + +
  KOO24762.1 842 LGAYEVSYEVQIKGK 856
                 79********97655 PP

  == domain 4  score: -1.2 bits;  conditional E-value: 1.2
                 -TTS-EEEEEEEEEE CS
     DUF5011  42 dtskvGtYtitYtvt 56 
                 d +  GtY it ++ 
  KOO24762.1 938 DDKGNGTYIITFSAA 952
                 67778******9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (995 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       555  (0.0309554); expected 358.6 (0.02)
Passed bias filter:                      374  (0.0208601); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.68u 0.25s 00:00:00.93 Elapsed: 00:00:00.41
# Mc/sec: 7358.91
//
Query:       KOO24763.1  [L=507]
Description: hypothetical protein Ctob_012268 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (507 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       882  (0.049194); expected 358.6 (0.02)
Passed bias filter:                      544  (0.0303419); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.56u 0.26s 00:00:00.82 Elapsed: 00:00:00.43
# Mc/sec: 3546.14
//
Query:       KOO24764.1  [L=149]
Description: hypothetical protein Ctob_012267 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
  ------ inclusion threshold ------
      0.023   14.1   0.0      0.038   13.3   0.0    1.3  1  Lectin_leg-like  Legume-like lectin family


Domain annotation for each model (and alignments):
>> Lectin_leg-like  Legume-like lectin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.0   2.1e-06     0.038      35      70 ..      70     106 ..      62     112 .. 0.91

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 2.1e-06
                      SEEEEE-SSTTEEEEEEESS-BEE.SSEEEEEEEEEE CS
  Lectin_leg-like  35 nqirltsdeqskkGslwtkspval.eswevevsFrvt 70 
                      +++rlt++eq ++G+ w +   +l + +e+ +sF++ 
       KOO24764.1  70 EKLRLTPSEQFRRGAAWHRATQRLvDGFEILFSFQID 106
                      5789***************9999889********985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (149 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       317  (0.0176809); expected 358.6 (0.02)
Passed bias filter:                      299  (0.0166769); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.22s 00:00:00.60 Elapsed: 00:00:00.37
# Mc/sec: 1205.97
//
Query:       KOO24765.1  [L=866]
Description: urease [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    4.6e-67  226.8   0.3    6.9e-67  226.2   0.3    1.3  1  Amidohydro_1  Amidohydrolase family
      4e-50  169.2   2.4    7.1e-50  168.4   2.4    1.4  1  Urease_alpha  Urease alpha-subunit, N-terminal domain
    7.2e-41  138.5   0.1    7.2e-41  138.5   0.1    2.2  3  Urease_gamma  Urease, gamma subunit
      2e-39  133.6   0.1    6.1e-39  132.0   0.1    1.9  1  Urease_beta   Urease beta subunit
      2e-05   24.3   0.2    0.00017   21.2   0.0    2.2  2  Amidohydro_3  Amidohydrolase family
  ------ inclusion threshold ------
      0.046   13.4   0.6       0.11   12.1   0.2    1.8  2  LamB_YcsF     LamB/YcsF family


Domain annotation for each model (and alignments):
>> Amidohydro_1  Amidohydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  226.2   0.3   2.3e-70   6.9e-67       1     339 [.     423     752 ..     423     783 .. 0.96

  Alignments for each domain:
  == domain 1  score: 226.2 bits;  conditional E-value: 2.3e-70
                   EEEE-EEEEEEECETTECSSSGHHHHHSTTHHHHHHHHHHHHHHHHTTEEEEEEEEHSSTH....HHHHHHHHHHTSSSEEEEEEESSEGGSGCCCS CS
  Amidohydro_1   1 ivlPGlIDaHvHleqsllrgatledwlvppetaaealesgiktalksGtttvadmgattst....giealleaaeelplglrilggkvsldrgsaet 93 
                   iv++G+ D+HvH+              ++p+ + eal+sg++t+ ++Gt++  ++ att+t     i+ +l+a++e+p+++++  +      g+++ 
    KOO24765.1 423 IVTAGGLDTHVHF--------------ICPQLVPEALASGVTTLYGGGTGPNHGTLATTITpapsQIQMMLQATDEMPMNFGFSSK------GNTSD 499
                   79***********..............*********************************************************99......***** PP

                   HHHHHHHHHHHHHHHHHHCTTTCEEEEEEECGTCCSHHHHHHHHHHHHHHHTTEEEEEE..TSSCHHHHHHHHHHTTTEEEETTTTSTCCHHTTTHC CS
  Amidohydro_1  94 skasreklkagaaetikgkadgvvkvalapheapafsdeelkealkeakkrdlpvaiHa..letkgevedaeaafgetiehgthlevaeslglldei 188
                   +   +  ++aga             ++++ he+++++++ ++++l  a+++d+ v+iH+  l+++g v d++aa++++++h++h e+a++++++d+i
    KOO24765.1 500 PAGMYACIEAGA-------------AGFKLHEDWGTTPSSIDACLTFAEQHDVAVTIHTdtLNESGYVDDSIAAIKGRTMHTYHSEGAGGGHAPDII 583
                   ***********9.............************************************************************************ PP

                   CEEEHCTCEEE...HH...HHHHHHHHHHHHCEE.........HHHHHHHHSEHHHHHHHHHHHH.TSCEEEEEECTTSSCCGGHHHH...HHHHHH CS
  Amidohydro_1 189 klilahgvhlt...pt...eaellkerlkeagva.........hcpfsnsilrsgrealrkalde.GvkvglgtDgaasgnslnllee...lrlalk 266
                   k++ + +v+++   pt   ++++++e+l++ +v+         +++f++s++r +++a+++ l++ G++++++tD++a+g++++l+++   ++ ++k
    KOO24765.1 584 KVCSEPNVLPSstnPTrpfTVNTVDEHLDMLMVChhldknipeDVAFAESRIRGETIAAEDILHDlGAISIMATDSQAMGRVGELVTRtwqTASKMK 680
                   ***********76655999****************************************************************************** PP

                   HHHHCCTT...TTHCHCHHHHHHHHHTHHHHHHTT-TTTSSSS-TTSB--EEEECCCTCGGGTTTCTSEEEEEEEE CS
  Amidohydro_1 267 lqrgllye...deegglslkealrmaTingAkalglddkvGsievGkdADlvvvdldilaafvglkkdgnvkkviv 339
                    qrg l e    +++++++k++l+++Tin+A+a+g+++ +Gs+++G+ ADlv++    +++++g k+ +  k++ v
    KOO24765.1 681 QQRGPLPEdkdTGNDNFRIKRYLAKYTINPAIAHGMSHLIGSVQPGRLADLVLW----KPSLFGAKPEMILKGGTV 752
                   ********999889****************************************....******999998877665 PP

>> Urease_alpha  Urease alpha-subunit, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  168.4   2.4   2.4e-53   7.1e-50       3     120 ..     298     416 ..     296     417 .. 0.98

  Alignments for each domain:
  == domain 1  score: 168.4 bits;  conditional E-value: 2.4e-53
  Urease_alpha   3 lsreeyaelyGptvgDrvrLadtellievekDltvyGeevkfGggkviRdgmgqssaakeeealDlvitnavilDa.tgivkadigikdgrivaiGk 98 
                   l+r+eya+++Gpt+gDrv L+dt l+++ve D+tvyG+e+kfGggk++R+gmgqss a + ealDlv+tna+ilD   gi+kadigik  riv+iGk
    KOO24765.1 298 LTRAEYAAMFGPTTGDRVTLGDTGLVVQVEADHTVYGDECKFGGGKTLREGMGQSSGADAGEALDLVVTNALILDPvLGIIKADIGIKGNRIVGIGK 394
                   789************************************************************************989******************* PP

  Urease_alpha  99 agnpdvmdgvdeelvigastev 120
                   agnpdvm gv++++++g++te+
    KOO24765.1 395 AGNPDVMAGVTPGMTVGVTTEA 416
                   ********************97 PP

>> Urease_gamma  Urease, gamma subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  138.5   0.1   2.4e-44   7.2e-41       1      99 []      34     132 ..      34     132 .. 1.00
   2 ?   -3.7   0.0       5.3   1.6e+04      15      32 ..     209     226 ..     206     228 .. 0.78
   3 ?   -2.9   0.0         3   8.8e+03      32      77 ..     363     408 ..     356     425 .. 0.55

  Alignments for each domain:
  == domain 1  score: 138.5 bits;  conditional E-value: 2.4e-44
                   ----HHHHHHHHHHHHHHHHHHHHHTT--B-HHHHHHHHHHHHHHHHHCTS-HHHHHHHHCCSS-CCCB-TTCHHH-SEEEEEEEETTEEEEEEEES CS
  Urease_gamma   1 mkLtpreldkLllfaaaelAqkrlarGlkLnhpEavaliasevlelardgksvaelmelgkklLtredvldgvaelleevqveatfpdgtkLvtvhd 97 
                   m+L+pre+d++ ++++++lAqkrlarGlkLnhpEav lia+++le++rdg+sva lm++g++lL+r++ ++gva+l++evqve+tfpdgtkL+t+h+
    KOO24765.1  34 MHLSPREIDHIQIVQVGQLAQKRLARGLKLNHPEAVGLIAAQMLEMIRDGESVAALMTKGQRLLGRRQLMPGVASLIHEVQVEGTFPDGTKLLTIHS 130
                   9************************************************************************************************ PP

                   -S CS
  Urease_gamma  98 pi 99 
                   pi
    KOO24765.1 131 PI 132
                   *9 PP

  == domain 2  score: -3.7 bits;  conditional E-value: 5.3
                   HHHHHHHHHHHTT--B-H CS
  Urease_gamma  15 aaaelAqkrlarGlkLnh 32 
                   +aa +  +  a G++Ln 
    KOO24765.1 209 NAALVFDRAAAYGMRLNV 226
                   567777788899****96 PP

  == domain 3  score: -2.9 bits;  conditional E-value: 3
                   HHHHHHHHHHHHHHHHHCTS-HHHHHHHHCCSS-CCCB-TTCHHH- CS
  Urease_gamma  32 hpEavaliasevlelardgksvaelmelgkklLtredvldgvaell 77 
                      + ali + vl  ++    ++    +g    ++ dv+ gv+  +
    KOO24765.1 363 LVVTNALILDPVLGIIKADIGIKGNRIVGIGKAGNPDVMAGVTPGM 408
                   5556667777777766655444444444444457788888886544 PP

>> Urease_beta  Urease beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  132.0   0.1     2e-42   6.1e-39       1      97 [.     166     262 ..     166     263 .. 0.97

  Alignments for each domain:
  == domain 1  score: 132.0 bits;  conditional E-value: 2e-42
                  TT-EE-SSSEEETTTT---EEEEEEE-SSS-EEEETTS-GGGS-TTEES-HHHHTTEEE-SSTT-EEEE-TT-EEEEEEEE-STT-EE-STTSS--E CS
  Urease_beta   1 pgeiiteegeielnagretiklkvantgdrpiqvgshyhflevnkaLefdRekalGlrldipagtavrfepgeekevelvelaGerkvyGlnglvng 97 
                  pg++ + +g ieln+gr+ i++ v+n+gdrpiqvgshyhfle+n+aL fdR++a+G+rl+++ag +vrfepg++k+v+lve+aG +kv   n+l++g
   KOO24765.1 166 PGTVSFGKGGIELNQGRKLIEVAVVNSGDRPIQVGSHYHFLETNAALVFDRAAAYGMRLNVAAGSSVRFEPGDAKTVTLVEIAGLKKVVSGNRLIDG 262
                  79999999**********************************************************************************9999876 PP

>> Amidohydro_3  Amidohydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.3   0.0      0.13   3.7e+02       9      22 ..     423     436 ..     420     451 .. 0.87
   2 !   21.2   0.0   5.8e-08   0.00017     403     455 ..     692     744 ..     628     753 .. 0.79

  Alignments for each domain:
  == domain 1  score: 0.3 bits;  conditional E-value: 0.13
  Amidohydro_3   9 lvlPGFvDsHtHla 22 
                   +v++G+ D H H +
    KOO24765.1 423 IVTAGGLDTHVHFI 436
                   79**********76 PP

  == domain 2  score: 21.2 bits;  conditional E-value: 5.8e-08
  Amidohydro_3 403 rpdeelsleealalyTrgpAkalgledrkGtLevGadADlvvldadpldvdpp 455
                   + +  + +   la yT +pA a g+++  G++++G  ADlv++   ++ ++p+
    KOO24765.1 692 TGNDNFRIKRYLAKYTINPAIAHGMSHLIGSVQPGRLADLVLWKPSLFGAKPE 744
                   45556788889********************************9999888876 PP

>> LamB_YcsF  LamB/YcsF family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.2   3.8e-05      0.11      43     121 ..       2      81 ..       1     112 [. 0.80
   2 ?   -2.9   0.0       1.5   4.4e+03      39      60 ..     523     544 ..     521     549 .. 0.86

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 3.8e-05
                 HHHHHHHHHHTT-EEEEE--.-S-TTTTT-S-----HHHHHHHHHHHHHHHHHHHHHTT----EE---HHHHHHHHH-HH CS
   LamB_YcsF  43 mrktvelakekgVaiGAhpg.ypDlegFGRremelspeelealvlyQigaLkafakaegvklshvkpHGaLynqaakdee 121
                 mrk+v++a+++  +  A p  ++     G r+m+lsp+e+ ++ + Q+g+L++   a g+kl+h  + G +  q+ +  +
  KOO24765.1   2 MRKVVRVAAASRCSSLARPEvLRLSTAAGVRRMHLSPREIDHIQIVQVGQLAQKRLARGLKLNHPEAVGLIAAQMLEMIR 81 
                 7888888888888888888624555678************************************9998888877765444 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 1.5
                 -HHHHHHHHHHHHHTT-EEEEE CS
   LamB_YcsF  39 dpevmrktvelakekgVaiGAh 60 
                 +p+++++ ++ a++++Va+  h
  KOO24765.1 523 TPSSIDACLTFAEQHDVAVTIH 544
                 57889999999******99988 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (866 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       251  (0.0139997); expected 358.6 (0.02)
Passed bias filter:                      234  (0.0130515); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.60u 0.28s 00:00:00.88 Elapsed: 00:00:00.44
# Mc/sec: 5879.53
//
Query:       KOO24766.1  [L=224]
Description: hypothetical protein Ctob_003854 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
     0.0062   16.5   0.9        1.3    9.0   0.2    2.3  2  CX9C      CHCH-CHCH-like Cx9C, IMS import disulfide relay-sys


Domain annotation for each model (and alignments):
>> CX9C  CHCH-CHCH-like Cx9C, IMS import disulfide relay-system,
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.1   0.0   0.00062        11      10      37 ..      89     118 ..      88     119 .. 0.85
   2 !    9.0   0.2   7.5e-05       1.3      10      37 ..     178     205 ..     177     206 .. 0.86

  Alignments for each domain:
  == domain 1  score: 6.1 bits;  conditional E-value: 0.00062
        CX9C  10 kefeaYhkCvssn.qs.wpekCkeqkkeLa 37 
                 k+ + ++ Cv +  ++   e Cke+  +L+
  KOO24766.1  89 KQIMLFEGCVVDDdEEgSMERCKELDAALS 118
                 899*********966689999*99988776 PP

  == domain 2  score: 9.0 bits;  conditional E-value: 7.5e-05
        CX9C  10 kefeaYhkCvssnqswpekCkeqkkeLa 37 
                 ++ + +++C+  +     kC e+++++a
  KOO24766.1 178 QQQLLFGQCMLEEDGSSVKCSELQVSIA 205
                 67788********889999*****9865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (224 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       480  (0.0267723); expected 358.6 (0.02)
Passed bias filter:                      368  (0.0205254); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.24s 00:00:00.64 Elapsed: 00:00:00.39
# Mc/sec: 1705.75
//
Query:       KOO24767.1  [L=457]
Description: protein phosphatase 2a regulatory b subunit [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    7.7e-15   55.0   4.8     0.0069   17.2   0.0    6.4  6  WD40      WD domain, G-beta repeat


Domain annotation for each model (and alignments):
>> WD40  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.8   0.0   0.00035       6.3      13      37 ..      27      51 ..      15      52 .. 0.87
   2 !    5.2   0.0    0.0025        44      24      38 .]     120     133 ..      89     133 .. 0.77
   3 !   17.2   0.0   3.9e-07    0.0069       4      38 .]     183     218 ..     180     218 .. 0.86
   4 ?   -1.0   0.0      0.22     4e+03      12      36 ..     250     267 ..     241     269 .. 0.71
   5 !   11.2   0.0     3e-05      0.54      14      38 .]     305     328 ..     292     328 .. 0.87
   6 !    9.0   0.4   0.00015       2.7      16      38 .]     364     386 ..     333     386 .. 0.70

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 0.00035
                EEEEEEETTSSEEEEEETTSEEEEE CS
        WD40 13 vtslafspdgawlasGsdDgtvriW 37
                +++++f+  g++la+G++ g v i+
  KOO24767.1 27 ISAVQFDGTGDYLATGDRGGRVVIF 51
                899*************999999886 PP

  == domain 2  score: 5.2 bits;  conditional E-value: 0.0025
                 EEEEEETTSEEEEEE CS
        WD40  24 wlasGsdDgtvriWd 38 
                 +l+s   D+t+++W+
  KOO24767.1 120 FLLSTN-DKTIKFWK 133
                 377656.*******6 PP

  == domain 3  score: 17.2 bits;  conditional E-value: 3.9e-07
                 EEEEE.SS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40   4 lrtlt.GH.ssvtslafspdgawlasGsdDgtvriWd 38 
                  rt++ GH  +++sl+fspdg   +s++ D  + +W+
  KOO24767.1 183 KRTFSnGHaYHINSLSFSPDGETYLSAD-DLRINLWN 218
                 578877**777************88877.*******8 PP

  == domain 4  score: -1.0 bits;  conditional E-value: 0.22
                 SEEEEEEETTSSEEEEEETTSEEEE CS
        WD40  12 svtslafspdgawlasGsdDgtvri 36 
                 +++s       +++ s+s +g vr+
  KOO24767.1 250 PICSS------QLIYSSS-KGLVRM 267
                 45433......6788999.999986 PP

  == domain 5  score: 11.2 bits;  conditional E-value: 3e-05
                 EEEEEETTSSEEEEEETTSEEEEEE CS
        WD40  14 tslafspdgawlasGsdDgtvriWd 38 
                 ++++fs+dg++++ + d  t++iWd
  KOO24767.1 305 SDVKFSRDGRYVM-ARDYMTLKIWD 328
                 5788********9.799*******9 PP

  == domain 6  score: 9.0 bits;  conditional E-value: 0.00015
                 EEEETTSSEEEEEETTSEEEEEE CS
        WD40  16 lafspdgawlasGsdDgtvriWd 38 
                 +++ +d + ++sG++D ++ +Wd
  KOO24767.1 364 CSWGHDDRHVCSGTYDSKLLVWD 386
                 3499999******99*******9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (457 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       413  (0.0230353); expected 358.6 (0.02)
Passed bias filter:                      349  (0.0194657); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.25s 00:00:00.73 Elapsed: 00:00:00.41
# Mc/sec: 3367.63
//
Query:       KOO24768.1  [L=131]
Description: transport protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.5e-19   70.1   1.2    2.5e-19   70.1   1.2    1.8  2  Sm_multidrug_ex  Putative small multi-drug export protein
  ------ inclusion threshold ------
       0.21   11.4   2.2       0.13   12.0   0.5    1.6  2  HCV_NS4a         Hepatitis C virus non-structural protein NS4


Domain annotation for each model (and alignments):
>> Sm_multidrug_ex  Putative small multi-drug export protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.1   1.2   2.7e-23   2.5e-19      47     121 .]       6      82 ..       1      82 [. 0.89
   2 ?   -0.5   0.3      0.21   1.8e+03      76      92 ..      94     110 ..      87     114 .. 0.71

  Alignments for each domain:
  == domain 1  score: 70.1 bits;  conditional E-value: 2.7e-23
  Sm_multidrug_ex  47 kkkllkklfekleekaekkseki..ekygflGLllFvaiPLpgTGawtGsliasllglkkkkallaillGvliaglI 121
                      +++++k+l + l ++aek s ++   +  +l L+lF+++P pgTGawtG++ia+ll++++ +a+ +i+ Gv++aglI
       KOO24768.1   6 RSNFFKRLAAPLLKRAEKISAGLptGQSRWLTLALFIGVPAPGTGAWTGAIIAYLLDMPFSSAMSSIFSGVVLAGLI 82 
                      456788888888888888777777569************************************************98 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 0.21
  Sm_multidrug_ex  76 GLllFvaiPLpgTGawt 92 
                      +L+++ a+ L gTGa++
       KOO24768.1  94 ALIALGAMLLAGTGAVV 110
                      56666666688899876 PP

>> HCV_NS4a  Hepatitis C virus non-structural protein NS4a
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.0      0.88   7.9e+03      19      23 ..      52      56 ..      51      60 .. 0.54
   2 ?   12.0   0.5   1.5e-05      0.13       2      40 ..      75     111 ..      74     126 .. 0.78

  Alignments for each domain:
  == domain 1  score: -3.3 bits;  conditional E-value: 0.88
    HCV_NS4a 19 ttGSv 23
                +tG++
  KOO24768.1 52 WTGAI 56
                55554 PP

  == domain 2  score: 12.0 bits;  conditional E-value: 1.5e-05
    HCV_NS4a   2 pvvlvGlalAglAiyalttGSvvvvtrwsvnGkgppvvv 40 
                  vvl+Gl++  l + a  tG+++  + + + G g  vv 
  KOO24768.1  75 GVVLAGLIMTILTL-AGKTGALIALGAMLLAGTG-AVVK 111
                 69*******99887.*******************.3333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (131 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       756  (0.0421663); expected 358.6 (0.02)
Passed bias filter:                      388  (0.0216409); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.37u 0.22s 00:00:00.59 Elapsed: 00:00:00.37
# Mc/sec: 1061.41
//
Query:       KOO24769.1  [L=687]
Description: pantetheinase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    6.4e-15   55.2   0.0      1e-14   54.5   0.0    1.2  1  CN_hydrolase   Carbon-nitrogen hydrolase
    5.6e-10   39.3   0.2    1.8e-09   37.7   0.2    1.9  1  NAD_binding_8  NAD(P)-binding Rossmann-like domain
    7.4e-08   32.1   0.1    1.9e-06   27.5   0.0    2.2  2  Amino_oxidase  Flavin containing amine oxidoreductase
     0.0075   16.3   0.0      0.016   15.2   0.0    1.6  1  NAD_binding_9  FAD-NAD(P)-binding


Domain annotation for each model (and alignments):
>> CN_hydrolase  Carbon-nitrogen hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.5   0.0   2.3e-18     1e-14      20     158 ..      48     198 ..      21     228 .. 0.84

  Alignments for each domain:
  == domain 1  score: 54.5 bits;  conditional E-value: 2.3e-18
                   HHHHHHHHHHHTTESEEEEETTTTTBS..........................SSHHHHHHHHBHSSSHHHHHHHHHHHHHTEEEEEEEEEEECCTT CS
  CN_hydrolase  20 klleliaeAarkgadLivlPElfitgy..........................keeahfleaAeaglgetlallaalarkngiavvigliereltng 90 
                     +e+i++A r ga+L+v+PE++itg+                          +  + + ++A    ++++  l+ +a+k+giavv+ l+    ++ 
    KOO24769.1  48 DYAEYIEQAGRAGASLVVFPEYGITGFssypksswvsggyveavpavpsgrrvVPCDSPSTFAN---APSVVSLSCVAKKHGIAVVANLMDY--DGH 139
                   5679***********************9999999999999998888888888755566666666...59***********************..9** PP

                   EEEEEEEEEEEETTSEEEEEEE-SS--EECTTSCECCGHHTSCS-SSS-EEEETTE.EEEEEEGGGGGS CS
  CN_hydrolase  91 klqayntavlldldgklvgkyrKlhLfpgeprpptaverelfepgdgipvfdtpvg.kiGaaiCyeigf 158
                   ++  ynt v ld dg +++ky K +L+       + ++  ++++   ++ f t++   +G+  C + ++
    KOO24769.1 140 NM--YNTDVALDTDGAFLAKYPKQNLW-------GERNVDIPQSCP-MASFTTSFNvTFGLITCADLIY 198
                   **..**********************9.......566666666633.6666777766678888877766 PP

>> NAD_binding_8  NAD(P)-binding Rossmann-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.7   0.2   4.1e-13   1.8e-09       1      54 [.     246     304 ..     246     313 .. 0.89

  Alignments for each domain:
  == domain 1  score: 37.7 bits;  conditional E-value: 4.1e-13
                    EE--SHHHHHHHHHHHCC.TE....EEEEE-SSSSSSGGG-EECETTCEECTS---EEE CS
  NAD_binding_8   1 IvGaGlsGlvaAylLaka.gf....dvlllekrdrlGGraasyevpgvrvdygahifhg 54 
                    +vGaG +G +aA++L  + g+    d  l+e+r ++GGr +s++v+g +vd+ga  f +
     KOO24769.1 246 VVGAGWAGIYAAWRLVVDaGAlapgDLCLFEARGKPGGRTYSVQVEGLVVDVGAYRFSK 304
                    8**************8654666777*****************************99977 PP

>> Amino_oxidase  Flavin containing amine oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.5   0.0   4.2e-10   1.9e-06       2      52 ..     252     308 ..     251     337 .. 0.84
   2 ?    2.8   0.0     0.013        58     169     305 ..     317     486 ..     307     531 .. 0.63

  Alignments for each domain:
  == domain 1  score: 27.5 bits;  conditional E-value: 4.2e-10
                    HHHHHHHHH.HHTT....EEEEEEESSSSSBTTS-EEEETTEEEESS--EEET.TTH CS
  Amino_oxidase   2 aGLaaArqL.lsaG....fdVtvlEardrvGGRirtvrsdGylielGamwftg.agn 52 
                    aG+ aA++L  +aG     d+ ++Ear+ +GGR ++v+ +G ++++Ga +f+  ++ 
     KOO24769.1 252 AGIYAAWRLvVDAGalapGDLCLFEARGKPGGRTYSVQVEGLVVDVGAYRFSKqQHL 308
                    8********9788888889********************************995444 PP

  == domain 2  score: 2.8 bits;  conditional E-value: 0.013
                    HHHHHHCHTSTT.TTCBHHHHTCCCCHHHHHTSCCCEETTHTHHHHHHHHHTTTTEEEETSEEEEEEEE....................ETTCEEE CS
  Amino_oxidase 169 lefasglfagdp.selsaklalpllwelegfggslllprgGlsqlpealaeelrgldirlntrVkeikr....................egdgvtv 243
                    le+  + ++ d+ ++++ + +l++  +++g  ++ ++p   ++++  +l++   g ++ +++r++ +                      +g+  ++
     KOO24769.1 317 LELPTACYEPDCkPDAEFNQTLFKIVDTKGRNAGYVTP---IRTMLAQLEA--AGARVFFGHRLTGVYAngaapttrgggssgaltsavSGSSSSL 407
                    55556666666666666666666777777777776766...7777777766..8888888888888877777777766654444444444445778 PP

                    EETTSTEEEESEEEE-S-HHHHH............SSEEESCCSHHHHHHHHHS............EEEEEEEEEEEESSGGSGCS CS
  Amino_oxidase 244 tledgevveaDaVvvTvplgvlk............ailfsPplpdekaeairnl............gfgsvnkvilefdrkfwedn 305
                    ++  g+vv+a aV++ +p  vl+            +        +  ++ ++n+            +   ++kv+ ++d ++w  +
     KOO24769.1 408 HFAGGQVVTASAVLLNLPRLVLQrldpasivfptdT-------TQLSWQLLKNCtpcfdpsagsavPNWLAVKVYTQYDDPWWITK 486
                    88899999**********999996666533333331.......2233444444344444433333355566677777777776654 PP

>> NAD_binding_9  FAD-NAD(P)-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.0   3.6e-06     0.016       1      45 [.     245     289 ..     245     313 .. 0.84

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 3.6e-06
  NAD_binding_9   1 aivGaGprGlavlerLlarakkkspleitlfdp.sepgagrvwrtd 45 
                    a+vGaG +G++++ rL+  a   +p ++ lf+   +pg gr ++ +
     KOO24769.1 245 AVVGAGWAGIYAAWRLVVDAGALAPGDLCLFEArGKPG-GRTYSVQ 289
                    89******************899**********44559.9999865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (687 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       273  (0.0152267); expected 358.6 (0.02)
Passed bias filter:                      215  (0.0119917); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.58u 0.28s 00:00:00.86 Elapsed: 00:00:00.45
# Mc/sec: 4560.72
//
Query:       KOO24770.1  [L=515]
Description: hypothetical protein Ctob_003850 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    5.9e-38  130.6   0.0    1.9e-37  129.0   0.0    1.7  1  Pkinase_Tyr      Protein tyrosine kinase
    4.4e-37  127.9   0.0    6.9e-37  127.2   0.0    1.2  1  Pkinase          Protein kinase domain
     0.0028   17.0   3.7     0.0065   15.9   3.7    1.6  1  SKG6             Transmembrane alpha-helix domain
  ------ inclusion threshold ------
      0.017   14.9   0.4      0.031   14.1   0.4    1.4  1  Adeno_E3_CR2     Adenovirus E3 region protein CR2
      0.044   13.7   0.4      0.095   12.7   0.4    1.6  1  Gram_pos_anchor  LPXTG cell wall anchor motif
      0.055   13.4   1.8       0.12   12.3   1.8    1.5  1  Syndecan         Syndecan domain
       0.09   12.4   0.0       0.16   11.5   0.0    1.3  1  RIO1             RIO1 family
       0.11   12.1   0.1       0.38   10.4   0.1    1.9  2  Wzy_C            O-Antigen ligase
       0.13   12.2   0.8       0.26   11.2   0.8    1.5  1  DUF2755          Protein of unknown function (DUF2755)
       0.15   11.6   0.0       0.27   10.8   0.0    1.3  1  MASE3            Membrane-associated sensor domain
       0.19   12.7   0.1        0.4   11.6   0.1    1.5  1  EphA2_TM         Ephrin type-A receptor 2 transmembrane domai
       0.28   10.6   5.4       0.59    9.6   5.4    1.5  1  MtrF             Tetrahydromethanopterin S-methyltransferase,
       0.32   11.3   2.1        0.6   10.4   1.3    1.8  1  Glycophorin_A    Glycophorin A


Domain annotation for each model (and alignments):
>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  129.0   0.0   1.4e-40   1.9e-37       3     252 ..     119     382 ..     117     385 .. 0.83

  Alignments for each domain:
  == domain 1  score: 129.0 bits;  conditional E-value: 1.4e-40
                  EEEEEEEESSEEEEEEEEETTTTSSEEEEEEEEEST..............TSSHHHHHHHHHHHHHHHTS-BTTB--EEEEEESSSSEEEEEE--TTE CS
  Pkinase_Tyr   3 lgkklGeGafGkVvegtlkgekekkevkVavKtlke..............eateeekeelleeakimkklkhpnivkllgvctkeepllivteyvkgG 86 
                  l+k+lGeG  G Vv+g ++       ++Va+K+ +                a ++ +++l +e++ +++++hpn++kl+gvc      ++++ y+++G
   KOO24770.1 119 LEKQLGEGGQGVVVRGLWH------GIEVAIKQPRPpkgsrgkqnafgstLALDSYNQALRREVRALSRVRHPNVIKLHGVCFGPA-PMLLMSYAPSG 209
                  689****************......67777777643222222222222212334458999***********************655.59********* PP

                  BHHHHHHHTCTTTSBHHHHHHHHHHHHHHHHHHHHTTEEEST-SGGGEEEEETTEEEE-STTTHEETTTSSEEEETTSSTSGGGGS-HHHHHHSE.EE CS
  Pkinase_Tyr  87 dLlkfLrkkekekltlkdllsfalqvAkGmeyLeskklvHrdlaarNvLlsenkvvkisDfGLardiekddeyvkkeeaklpvkWmapEslkekk.ft 183
                  +L++ L ++  +  t  +++++ + +A+Gme ++++k++H dl   NvL+   +v  i+DfGL+ + + ++  +++ +++  + + apE + +   + 
   KOO24770.1 210 TLQDALDNQ--KFQTSLEMVRLLAGIARGMEAVHAHKIIHLDLKPENVLIGPLDVPWITDFGLSTSANMTSISQSTAGGRGTLPFKAPELFAHPPwVG 305
                  *******98..666777899***********************************************999999******************9988688 PP

                  HHHHHHHHHHHHHHHHTTSSGTTTTS..HHHHHHHHHHTTEE..S-BBT.....TSBHHHHHHHHHHT-SSGGGS--H CS
  Pkinase_Tyr 184 sksDvWsfGvllwEiftlgespypgl..kneevleklkegkr..lekpe.....kcpeelyelmkkcweedpeeRptf 252
                   ++Dv++f++l w +++ ge+py+++   ++++ +++ +g r  l+ p+     k++  + +l++ cw+++ ++Rptf
   KOO24770.1 306 PEADVYAFAILAWIVVC-GEQPYANMhaAATSLPQAVAQGVRptLADPSeewqdKTTLPMVRLIEGCWHAEYAQRPTF 382
                  9************7777.********6445667888899998665555411111445568899**************9 PP

>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  127.2   0.0     5e-40   6.9e-37       4     255 ..     120     382 ..     117     388 .. 0.87

  Alignments for each domain:
  == domain 1  score: 127.2 bits;  conditional E-value: 5e-40
                 EEEEEEESSEEEEEEEETTTTEEEEEEEEECHCHCHHHH.............HHHHHHHHHHHHHSCTTB--EEEEEEESSEEEEEEE--TTEBHHHHH CS
     Pkinase   4 leklGeGsfGkVykaveketgkivAvKkikkekakkkke.............kkvlrEikilkklkhpnivrlyevfeekdelylvleyveggeladll 89 
                 +++lGeG+ G+V++++  + g +vA+K+ +  k +  k+             ++++rE++ l +++hpn+++l +v+  +  + l++ y++ g+l+d+l
  KOO24770.1 120 EKQLGEGGQGVVVRGL--WHGIEVAIKQPRPPKGSRGKQnafgstlaldsynQALRREVRALSRVRHPNVIKLHGVCFGPAPM-LLMSYAPSGTLQDAL 215
                 689*************..9**********9999888888899*********9999**********************977766.5899*********** PP

                 HHHSS--HHHHHHHHHHHHHHHHHHHHTTEE-SS-SGGGEEEETTTEEEE-SGTTSEESSSSCS...BCTTTSCGGGS-HHHHTTSCB.SHHHHHHHHH CS
     Pkinase  90 erkgslseeeakkiakqilegleylHskgiiHrDlKpeNiLidekgelKitDFGlakelesssk...ltsfvgtseYlAPEvlkeney.skkvDvWslG 184
                  +++  ++ e+ ++++ i++g+e +H+++iiH DlKpeN+Li   ++  itDFGl++ ++ +s    +    gt  + APE+  + +  ++++Dv++ +
  KOO24770.1 216 DNQKFQTSLEMVRLLAGIARGMEAVHAHKIIHLDLKPENVLIGPLDVPWITDFGLSTSANMTSIsqsTAGGRGTLPFKAPELFAHPPWvGPEADVYAFA 314
                 *99999999**********************************9999*********99998776555777899**********888887********** PP

                 HHHHHHHHSS-STTTSSHHHHHHHHHHTHHHHHHHCT..SHH...HHHTTS-HHHHHHHHHHT-SSGCCSTTH CS
     Pkinase 185 vilyelltgkppfsgekgkekvekeldqlekilkilg..etkeklpeaseiseeakdllkkllkkdpkkRlta 255
                 ++ + +++g++p+++ +    +++ l q  ++++ ++    + + +++++    + +l++ +++ +  +R+t+
  KOO24770.1 315 ILAWIVVCGEQPYANMHA---AATSLPQ--AVAQGVRptLADPSEEWQDKTTLPMVRLIEGCWHAEYAQRPTF 382
                 **************4443...3444444..222222232234555666677889*****************97 PP

>> SKG6  Transmembrane alpha-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   3.7   4.7e-06    0.0065      16      38 .]      23      45 ..      15      45 .. 0.88

  Alignments for each domain:
  == domain 1  score: 15.9 bits;  conditional E-value: 4.7e-06
        SKG6 16 VaVPVaViiivLlailifvrRRk 38
                ++V V+Vi++++la+li++rRR+
  KOO24770.1 23 IGVIVGVILLLVLALLILYRRRR 45
                56679*****************6 PP

>> Adeno_E3_CR2  Adenovirus E3 region protein CR2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   0.4   2.2e-05     0.031       7      34 ..      20      46 ..      16      51 .. 0.66

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 2.2e-05
  Adeno_E3_CR2  7 aIivaVvvGlaiIiicmlyYaCcYrkhr 34
                  +Ii +V+vG++++ +++ + + ++r+ +
    KOO24770.1 20 GIIIGVIVGVILL-LVLALLILYRRRRE 46
                  8********8766.55555555555544 PP

>> Gram_pos_anchor  LPXTG cell wall anchor motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.4   6.9e-05     0.095      13      41 ..      17      46 ..      15      48 .. 0.78

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 6.9e-05
                     XXXXXXXXXXXXXXXXXXXXXX.XXXXXXX CS
  Gram_pos_anchor 13 GengnifltaaGllallggllL.lvkrRKk 41
                     G++g i+  ++G+++ll+ +lL l++rR++
       KOO24770.1 17 GSTGIIIGVIVGVILLLVLALLiLYRRRRE 46
                     8899999*****666666666659999997 PP

>> Syndecan  Syndecan domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   1.8   8.6e-05      0.12      11      35 ..      20      44 ..      15      46 .. 0.91

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 8.6e-05
    Syndecan 11 aviggvvvgllfaillvlflvYRmr 35
                ++i gv+vg++++ +l l+++YR r
  KOO24770.1 20 GIIIGVIVGVILLLVLALLILYRRR 44
                89*********************76 PP

>> RIO1  RIO1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   0.00012      0.16      53     153 ..     170     272 ..     153     280 .. 0.80

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.00012
                 HHHHHHHHHHHHHHHTT.--S--EEEEETTEEEEE--EETTEEGGBHHHCG.-.HHHHHHHHHHHHHHHHHHHHTSTEEESS-STTSEEEETT.EEEE- CS
        RIO1  53 lwaekEfrnLkrleeag.vpvPkpielkrhvlvmefigedgvaapklkdve.e.eeeaeelyeevleemrklykeaglvHaDLSeyNvlvded.kvviI 147
                  + ++E+r+L+r+++ + ++   ++     +l+m++    g+    l++ + + + e+ +l++ + + m+++   ++++H DL   Nvl+     ++i 
  KOO24770.1 170 QALRREVRALSRVRHPNvIKLHGVCFGPAPMLLMSYAP-SGTLQDALDNQKfQtSLEMVRLLAGIARGMEAVH-AHKIIHLDLKPENVLIGPLdVPWIT 266
                 56678888888887766456666666677899999998.7888888888876568899999999999888766.****************986589999 PP

                 -GTTEE CS
        RIO1 148 DvsQav 153
                 D++ ++
  KOO24770.1 267 DFGLST 272
                 998665 PP

>> Wzy_C  O-Antigen ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.1   0.00028      0.38      13      53 ..      16      59 ..       7     113 .. 0.65
   2 ?   -2.6   0.0       2.7   3.8e+03     100     116 ..     376     391 ..     310     403 .. 0.65

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00028
       Wzy_C 13 stsRsgiigl....lvalivlliifykrripfllllgilvgvill 53
                s+s + iig+    +++l+++l+i+y+rr+   + ++i+v  +++
  KOO24770.1 16 SGSTGIIIGVivgvILLLVLALLILYRRRR-ETRRKLIVVTPAVA 59
                556666665544337778888899999999.55555555555554 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 2.7
       Wzy_C 100 ikdspilGtGvfdfpqg 116
                 + ++p +G G +  p g
  KOO24770.1 376 YAQRPTFGSG-SAPPGG 391
                 4566777777.555555 PP

>> DUF2755  Protein of unknown function (DUF2755)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.8   0.00019      0.26      60     100 .]       8      45 ..       5      45 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00019
     DUF2755  60 sarpqveislavGtlfglvpflaGlvilgvlalilrlrrrr 100
                 ++  +ve s + G++ g+   ++G+++l vlal++ +rrrr
  KOO24770.1   8 TGTSAVETSGSTGIIIGV---IVGVILLLVLALLILYRRRR 45 
                 667789999999998775...79***************997 PP

>> MASE3  Membrane-associated sensor domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0    0.0002      0.27     133     172 ..      13      52 ..       7      67 .. 0.89

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.0002
       MASE3 133 iegsGlTpfkiisEyliilllllalllllrrrkkfekkvl 172
                 +e sG T + i + + +illl+lall+l+rrr+++++k +
  KOO24770.1  13 VETSGSTGIIIGVIVGVILLLVLALLILYRRRRETRRKLI 52 
                 7899*****************************9998765 PP

>> EphA2_TM  Ephrin type-A receptor 2 transmembrane domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.1   0.00029       0.4       1      31 [.      21      50 ..      20      82 .. 0.69

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 0.00029
    EphA2_TM  1 iiaaavaglvllvilvilvlvlvrrrsknrk 31
                ii+++++g++ll++l +  ++ +rrr+ +rk
  KOO24770.1 21 IIIGVIVGVILLLVLAL-LILYRRRRETRRK 50
                68888999999988444.4444445544443 PP

>> MtrF  Tetrahydromethanopterin S-methyltransferase, F subunit (MtrF)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   5.4   0.00043      0.59      34      61 ..      10      38 ..       9      39 .. 0.88

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 0.00043
        MtrF 34 dSGvsatgivGfaiGfvlAllLvv.lPvl 61
                +S+v+++g +G++iG+++ ++L++ l++l
  KOO24770.1 10 TSAVETSGSTGIIIGVIVGVILLLvLALL 38
                59*****************9999967665 PP

>> Glycophorin_A  Glycophorin A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   1.3   0.00044       0.6      61     100 ..      19      61 ..      11      67 .. 0.82

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00044
                    HHHHHHHHHHHHHHH...HHHHHHHHTHSXXXXXXXXXXXXXX CS
  Glycophorin_A  61 tliifgvmAgvigti...llisYlirRliKKssvdvkplespD 100
                    t+ii+gv+ gvi+ +   lli Y  rR +++ + +v p  +p 
     KOO24770.1  19 TGIIIGVIVGVILLLvlaLLILYRRRRETRRKLIVVTPAVAPT 61 
                    78999999999876533379***********999999987775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (515 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1137  (0.0634168); expected 358.6 (0.02)
Passed bias filter:                      808  (0.0450667); expected 358.6 (0.02)
Passed Vit filter:                       110  (0.00613531); expected 17.9 (0.001)
Passed Fwd filter:                        13  (0.000725082); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 0.65u 0.30s 00:00:00.95 Elapsed: 00:00:00.43
# Mc/sec: 3635.83
//
Query:       KOO24771.1  [L=275]
Description: hypothetical protein Ctob_003851 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
     0.0016   18.9   0.0      0.025   15.0   0.0    2.1  2  CRC_subunit  Chromatin remodelling complex Rsc7/Swp82 subunit


Domain annotation for each model (and alignments):
>> CRC_subunit  Chromatin remodelling complex Rsc7/Swp82 subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.5   0.0     0.021   3.8e+02      71      95 ..      24      48 ..      20      57 .. 0.89
   2 !   15.0   0.0   1.4e-06     0.025      66     116 ..     163     215 ..     138     222 .. 0.91

  Alignments for each domain:
  == domain 1  score: 1.5 bits;  conditional E-value: 0.021
  CRC_subunit 71 llkllatqeekedLiergllpsslk 95
                 ll+++a++++  +Li+r++++++++
   KOO24771.1 24 LLPMEASSSKLMQLIKREFVKDKYR 48
                 78999****************9998 PP

  == domain 2  score: 15.0 bits;  conditional E-value: 1.4e-06
  CRC_subunit  66 kknpqllkllatqeekedLiergllpsslksrqiklvta..rsvFlefGarii 116
                  + ++ql+k+l +q e e L++ ++ +++ +  +i++v+a  ++ Fl+fG + +
   KOO24771.1 163 RAHKQLRKMLKEQCEDEYLVHCEMTKEKARDGSIEFVSAgsKERFLHFGQQAL 215
                  689***********************************955778*****8865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (275 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       680  (0.0379274); expected 358.6 (0.02)
Passed bias filter:                      437  (0.0243739); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.24s 00:00:00.68 Elapsed: 00:00:00.39
# Mc/sec: 2111.07
//
Query:       KOO24772.1  [L=128]
Description: hypothetical protein Ctob_003852 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
     0.0081   15.0   0.1     0.0092   14.8   0.1    1.0  1  Peptidase_S9_N  Prolyl oligopeptidase, N-terminal beta-propel
  ------ inclusion threshold ------
       0.67   11.0   4.3       0.94   10.5   4.3    1.3  1  FKBP_N          Domain amino terminal to FKBP-type peptidyl-p


Domain annotation for each model (and alignments):
>> Peptidase_S9_N  Prolyl oligopeptidase, N-terminal beta-propeller domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.1     1e-06    0.0092     296     395 ..      12     108 ..       2     113 .. 0.77

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 1e-06
                     TT-TT-EEEEEETTSSSGGGEEEEE--.SSCEEEEEEECTTEEEEEEEETTEEEEEEEETTTS-.EEEEEB-SSSSEEEEEE--TT-SEEEEEEE CS
  Peptidase_S9_N 296 dgapnfrlvsvdlndpspsewkelvperekvvleeitvfknylvvsyrkdvlsrvqvvdlkngkvllfevplpgvgsvssasgekedselfysfs 390
                     ++++n rl + + + +++++   ++ er++v++ + ++ + +l + +r+d+ +rvq+++ + ++  ++ev+      +++a++++  +++ +s +
      KOO24772.1  12 NTFVNSRLGQEQKQRQQEVHAAAVITERASVFEGKKRIEDARL-AQERRDAATRVQAHQRRRQE--QREVERTRREAAEAAAATQAATRMVISAT 103
                     56889999999999999999999*********76666666665.788************77777..66666666666666666666666777666 PP

                     ETTCE CS
  Peptidase_S9_N 391 SfltP 395
                     + l P
      KOO24772.1 104 GKLAP 108
                     66555 PP

>> FKBP_N  Domain amino terminal to FKBP-type peptidyl-prolyl isomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   4.3   0.00011      0.94      11      72 ..      18      85 ..       6     103 .. 0.64

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00011
      FKBP_N 11 sigqqlkaqgkeldkdavlaGlkdalkgkskltdeeiqev.......lqalqeklqekq.....eeeaeknkae 72
                 +gq++k+ ++e+  +av+   +++++gk++++d  + +        +qa q ++qe++     +      +++
  KOO24772.1 18 RLGQEQKQRQQEVHAAAVITERASVFEGKKRIEDARLAQErrdaatrVQAHQRRRQEQRevertR------REA 85
                5799999*********************9998655433331111111444455555555332221......222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (128 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2326  (0.129734); expected 358.6 (0.02)
Passed bias filter:                      629  (0.0350828); expected 358.6 (0.02)
Passed Vit filter:                        59  (0.00329076); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.42u 0.26s 00:00:00.68 Elapsed: 00:00:00.40
# Mc/sec: 949.97
//
Query:       KOO24773.1  [L=558]
Description: hypothetical protein Ctob_003853, partial [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      8e-11   42.3   0.1      1e-09   38.8   0.0    2.6  2  Glyco_tranf_2_4  Glycosyl transferase family 2


Domain annotation for each model (and alignments):
>> Glyco_tranf_2_4  Glycosyl transferase family 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.8   0.0   5.8e-14     1e-09       7      88 ..      68     172 ..      65     177 .. 0.76
   2 ?    0.0   0.0     0.071   1.3e+03      29      60 ..     499     530 ..     478     542 .. 0.81

  Alignments for each domain:
  == domain 1  score: 38.8 bits;  conditional E-value: 5.8e-14
  Glyco_tranf_2_4   7 LpeflahhlalgfdrilvydndstDgtrailkelpe..vkllhvd..........ksy..........ederrqvellkallarya..eadwvl 76 
                      L +f+ ++l +gf+r+++y +d+ D +  + +++p   v++   d                       e ++rq+   ++++ar +   ++w+l
       KOO24773.1  68 LDSFICYYLHVGFSRLYLYLDDPNDASVGVARRYPTdrVTVRVRDaafeceweglP-SwsrlrlyaatEVQARQMLNCEHAIARCReqGDEWLL 160
                      7899*****************************85534777777755665555551.055555556546789998877777776541157**** PP

  Glyco_tranf_2_4  77 vvDaDEflvvpd 88 
                      +vD+DE+l+ p 
       KOO24773.1 161 HVDSDELLHLPG 172
                      ********9986 PP

  == domain 2  score: 0.0 bits;  conditional E-value: 0.071
  Glyco_tranf_2_4  29 stDgtrailkelpevkllhvdksyederrqve 60 
                       +D+t+ +l+e++ v+  + ++++++e+ +++
       KOO24773.1 499 ADDRTMGLLAEQALVEATRLTHAMASEAIAMA 530
                      58999*****9999998888887776666654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (558 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       507  (0.0282782); expected 358.6 (0.02)
Passed bias filter:                      285  (0.015896); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.50u 0.22s 00:00:00.72 Elapsed: 00:00:00.39
# Mc/sec: 4243.34
//
Query:       KOO24774.1  [L=4551]
Description: flagellar outer dynein arm heavy chain beta [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   1.9e-143  479.1   0.0   4.5e-143  477.9   0.0    1.7  1  DHC_N1           Dynein heavy chain, N-terminal region 1
   1.7e-132  441.4   0.0   4.1e-131  436.8   0.0    2.5  2  AAA_6            Hydrolytic ATP binding site of dynein motor 
    1.3e-95  320.8   3.4    1.3e-95  320.8   3.4    3.1  3  DHC_N2           Dynein heavy chain, N-terminal region 2
    1.9e-95  319.1   0.0    4.5e-95  317.9   0.0    1.6  1  AAA_8            P-loop containing dynein motor region D4
      2e-81  273.6   0.0    8.5e-80  268.2   0.0    2.6  2  Dynein_C         Dynein heavy chain C-terminal domain
    3.1e-79  266.5   5.3    5.9e-79  265.6   5.3    1.5  1  MT               Microtubule-binding stalk of dynein motor
    4.2e-62  209.1   0.1    3.1e-61  206.3   0.0    2.5  2  AAA_9            ATP-binding dynein motor region
      1e-60  204.4   0.2    1.9e-58  197.0   0.0    3.0  3  AAA_7            P-loop containing dynein motor region
    2.2e-44  151.2   0.0    4.7e-44  150.1   0.0    1.6  1  AAA_lid_11       Dynein heavy chain AAA lid domain
      4e-32  110.8   0.0    1.6e-31  108.9   0.0    2.1  1  Dynein_heavy     Dynein heavy chain region D6 P-loop domain
    4.7e-26   90.9   0.2    2.6e-25   88.5   0.1    2.4  2  AAA_lid_1        AAA+ lid domain
      4e-22   78.7   0.0    1.3e-21   77.0   0.0    2.0  1  Dynein_AAA_lid   Dynein heavy chain AAA lid domain
    8.6e-17   61.4   0.0    5.4e-06   26.5   0.0    5.4  4  AAA_5            AAA domain (dynein-related subfamily)
  ------ inclusion threshold ------
      0.011   16.2   0.0         10    6.6   0.0    3.7  3  AAA              ATPase family associated with various cellul
       0.68    9.5   3.0        2.9    7.5   0.1    2.7  2  Fur_reg_FbpB     Fur-regulated basic protein B
       0.86    9.4   4.5        6.4    6.6   1.0    3.1  2  PPR_1            PPR repeat


Domain annotation for each model (and alignments):
>> DHC_N1  Dynein heavy chain, N-terminal region 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  477.9   0.0    4e-146  4.5e-143       1     558 [.     195     773 ..     195     776 .. 0.97

  Alignments for each domain:
  == domain 1  score: 477.9 bits;  conditional E-value: 4e-146
      DHC_N1   1 vnaleslvieWikqIkevlkedsd........grke....gplaEieFWrsreanLssieeqlkspevkkvlkvLkaakssyleafkaldtelkkalee 87 
                 v+ les+v  W++ I+++l++d++                gp   i+FW+s++ +L  i eql sp + kv+kvL+  +s y  +fkal t+l+    e
  KOO24774.1 195 VHVLESAVVMWTERINTALNRDPEsvfgnvgtK--DelfpGPILCIDFWQSKAIDLGDILEQLSSPHIVKVIKVLEIIRSPYHGSFKALATQLSIRHME 291
                 688********************9999988640..24566*********************************************************** PP

      DHC_N1  88 AkdnvkyLktLekpledLestdleeikellpsllnairliwkiSryYntperivsLlekisnqlieqckkylnpee.lfgqeveeaikklkeaiellea 185
                 Akdnvk+L++L+  + +L+++d++e+   ++++++ + +iwk+S+++ntp  +  +++ ++n++ie+++++l + + +fg e+++a +k+++ ++++++
  KOO24774.1 292 AKDNVKFLESLRAKFIELLQSDFSEVSMRFKPIMHMLLMIWKHSKFFNTPPALALMVRTLCNDVIEKARDFLGGTGeIFGAEPKDACEKINAVLDVCRS 390
                 *************************************************************************9999**98****************** PP

      DHC_N1 186 wkeeyeektrekleespkekpwefdeksiFarldafleRlekllelfetieqfsklekv..ggtkgkelegqieeileefeeaveklksksydvLdvsa 282
                  k  y   + +  +++ +++pw  d+ ++F+rld f++R+e+ll+l++t++qf+kl +v  gg+ g  l++  e+i ++f  a++k+++++ydvLdv+ 
  KOO24774.1 391 LKADY-YMYYAVAKTQCEHNPWMADRGNMFKRLDLFITRCEDLLHLCRTAQQFEKLITVviGGIAGAILTQDSEDIAKQFALALNKMRELQYDVLDVQM 488
                 *****.588878888889*******************************************9************************************* PP

      DHC_N1 283 eefeadfkeFkerikdlerrlqaiinqafedasslesalellrkfesllerpkikaaleekytdllqmykeeleavkklfekqkenps..........a 371
                 ++fead+++F   +k le+r+++++ q fed+ ++ ++++l+++f+ ller+ i+a+le k+ dl++ y++el++v+++f + ++  +          +
  KOO24774.1 489 TQFEADITRFTVAVKALETRVGKVLGQGFEDCDTVGKGFKLVDSFGDLLERDFIQADLEAKQIDLIRIYADELKQVQEIFSRDRNGSNsrgkfferdgP 587
                 **********************************************************************************98885568999****** PP

      DHC_N1 372 plaknmPpvaGaiiwarqlerrieepmekfeeegegllkteegkkvkkkynelakkLkeyerklfeeWleeveekseeklkrpLLvredettkllevNF 470
                 pl+ n+Ppv+Ga++w+  l +r+eepm+ +    + +++t e ++vk+ y++++k L+eye+ +f++W+e+++++  ekl  pLL+r d +++ + vNF
  KOO24774.1 588 PLYTNQPPVSGALAWVSGLIKRLEEPMKALTPVLRIMEDTDEVRDVKRMYESIMKVLQEYEEAMFSAWKESIDATLGEKLTLPLLTR-DGKSQEIAVNF 685
                 *******************************8558999*************************************************.55888899*** PP

      DHC_N1 471 dpellallrEvkylqrlgfevPesakniakqeeklrkyaesLellvreynrilesllpverpLlaeelkeldaklepGltklnWnslg 558
                 dp+l++ll E+ky+ + + ++P+ a+++++ +e +r ++ +L+l+ ++yn++l+ +l+ve+pLl++ +k++d++l +Gl+ l W+s +
  KOO24774.1 686 DPQLIKLLSECKYFVMQRKKIPDVAQKMYEGAEMFRVHTANLTLVQNMYNEMLRIMLDVEKPLLKGSMKAIDKVLDRGLKGLVWKSPN 773
                 *************************************************************************************987 PP

>> AAA_6  Hydrolytic ATP binding site of dynein motor region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  436.8   0.0  3.7e-134  4.1e-131       3     327 .]    1833    2168 ..    1832    2168 .. 0.97
   2 ?    1.5   0.0       0.1   1.2e+02     206     263 ..    2696    2756 ..    2671    2773 .. 0.74

  Alignments for each domain:
  == domain 1  score: 436.8 bits;  conditional E-value: 3.7e-134
       AAA_6    3 yeYlgnserLviTpltdrcyltltqAlklklggapaGpagtGKtEtvkdLakalakqvvvfncsdqldykslgkifkGlaqsGaWgCfdeFnriele 99  
                  +eY+gn +rLviT ltdrcy+tl qAl+l +ggap+GpagtGKtEt+kdL++ l+ +v+v ncsdq++ k  g++f+Glaq+GaWgCfdeFnri++e
  KOO24774.1 1833 HEYVGNPGRLVITALTDRCYITLSQALRLMMGGAPQGPAGTGKTETTKDLGRGLSIWVIVSNCSDQMNNKVTGNFFSGLAQTGAWGCFDEFNRITVE 1929
                  69*********************************************************************************************** PP

       AAA_6  100 vLSvvaqqiktiqqalkekkkkfvfegkeiklnksvgifitmnpgyagrteLPdnLkalfRpvammvPdlelIaeimLfseGfkeakelakklvtly 196 
                  vLSvva+q  +i+q +++ k +fvfe++ei+l +++g++itmnpgyagr+eLP+nLkalfRp+am++P++e Iaei L+ eGf+++k+la+k+vt+y
  KOO24774.1 1930 VLSVVATQYGSILQGIRAGKARFVFEEEEINLVTTIGAWITMNPGYAGRAELPENLKALFRPCAMVTPNFENIAEINLAGEGFNDSKNLANKFVTMY 2026
                  ************************************************************************************************* PP

       AAA_6  197 kllseqlskqdhydfglralksvlkaagelkreepeeseeelllralrdvnlpklvaeDvplfkglisdlFpgvelpesdyeeleeaieevlkek.. 291 
                   ++ + lskq hyd+glra+  vl++ag +kr++pe+se+++l+ra+rd+nlpk+v++D  +f g+i+dl+p+v++p+  + +l++ai +v+++k  
  KOO24774.1 2027 YVCGQLLSKQMHYDWGLRAMSGVLRIAGGMKRADPEKSEQQILMRAMRDTNLPKFVQADFGIFLGVITDLYPKVDCPAIINPDLKKAIMDVIADKet 2123
                  *****************************************************************************************99987533 PP

       AAA_6  292 .........klqleekfvekviqlyetlkvrhgvmlvGetgsgKt 327 
                           +lq+ee+fv k+i+l+e l+vrh+v+++G++g++K+
  KOO24774.1 2124 sywgtlgrpRLQAEENFVIKTINLFEALSVRHCVFVLGTAGAAKS 2168
                  33333333357899*****************************97 PP

  == domain 2  score: 1.5 bits;  conditional E-value: 0.1
       AAA_6  206 qdhydfglralksvlkaagelkre...epeeseeelllralrdvnlpklvaeDvplfkgli 263 
                  + hy+++lra+ sv +    ++     +p    + ll +a r      + ++D++ f++li
  KOO24774.1 2696 KFHYQWNLRAMASVFQGLIITQPGtykDPLRMARLLLHEAYRVYSDRMVFESDCEKFQELI 2756
                  56************98776665431113444455566666666666666677888888876 PP

>> DHC_N2  Dynein heavy chain, N-terminal region 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.1       1.5   1.7e+03      14      91 ..     965    1045 ..     953    1082 .. 0.64
   2 !  320.8   3.4   1.2e-98   1.3e-95       2     385 ..    1288    1681 ..    1287    1693 .. 0.96
   3 ?   -2.6   0.0         2   2.2e+03     253     284 ..    2247    2280 ..    2246    2287 .. 0.77

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 1.5
                  XXXXXXXXXX.XXXXX.....XXXXXXXXXXXXXXXXXXXXXXXX.XXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
      DHC_N2   14 lwdlvsewqe.kleewkktpfkeldveeleeevkellkklkklpk.alke.wevakelkekieefkevlplieelrnpalr 91  
                  l++ ++  +   l+e+++ ++  ++v+++ +e+++ +k+++ l    lk+    ak+++ ++e f+e   + ++  np +r
  KOO24774.1  965 LFKRLDRTEGdFLKEMEENELVRFHVHRIVDELESNQKAARDLRApMLKHrSLWAKNINHTLEAFLEEATVAADENNPLIR 1045
                  333333332212222444555666888888888888888888887455553445677888888888888888887777776 PP

  == domain 2  score: 320.8 bits;  conditional E-value: 1.2e-98
                  XXXXXXXXXXXXXXXXXXXXXXXXXXX.....XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
      DHC_N2    2 eeikkelellkklwdlvsewqekleewkktpfkeldveeleeevkellkklkklpkalkewevakelkekieefkevlplieelrnpalrerHwkel 98  
                  ++i++el+llk  wd v+ +q  + ++  t ++ +dve++ + +k+l+k++k l+ka+++w+v   l + + +++ +l+++ elr +a+rerHwk+l
  KOO24774.1 1288 KTIRTELTLLKLSWDFVQYVQDIFGSFRATLWTAVDVEAMTDVTKKLQKEVKMLNKAIHKWDVHIGLTALVASMSISLEVVGELRDEAMRERHWKQL 1384
                  7899********************************************************************************************* PP

                  XXXX..XXXXXXXX.XXXXXXXXXXX..XXXXXXXXXXXXXX-HHHHHHHHHHHHHHTS---EEEE-SSS.TEEE..THHHHHHHHHHHHHHHHTCS CS
      DHC_N2   99 sellgvikdpdseesltlgdllelgl..leeeieeisekAtkEaslekalkkieeewkelefelteykdsgvfilkgvdeiielledhivklqsmks 193 
                  +  +++  +   +++++l+ l +l+l  ++e + ei+e+A++E ++  +l+ki ++w+ l + + +yk+sgv il++  +++e+l+d+ v lq+m++
  KOO24774.1 1385 MVVCKQ--TFVVDDKMQLDTLYKLELdkHREPVSEIVERARAEIKIDLQLQKIINTWAGLFLFYRPYKTSGVQILEQPGDVFEALDDNEVVLQNMMG 1479
                  ****85..34455779**********988******************************************************************** PP

                  SSTT..THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT.T.HHHHHHTHHHHHHHHHHHHHHHHHHHHHHTTSGGGG...STTHHHHHHHHHH CS
      DHC_N2  194 spyvkpfeeeveewekklsrlqeildewlkvQrkWlyLepifss.edirkqlpeeakrFksvdkewkkimkevskdpnvleatskpgllekleelne 289 
                  +++v++fe++v++w++kl +++ +ld+w++vQr+W  Le+if + edir+qlpe+akrF+ +d+++++ m ++ +++n +e++s +g+le +e++  
  KOO24774.1 1480 NRFVGFFEATVSSWKSKLGNTRAVLDVWIEVQRSWTQLESIFLAsEDIREQLPEDAKRFDGIDSSFREQMVDACQNSNPIEVCSAQGRLEVFEKNFR 1576
                  ****99**************************************77***************************9999******************** PP

                  HHHHHHHHHHHHHHHHHHHSTTHHHH-HHHHHHHHHTTTTSGGGHHHHHHHHSSEEEESE...........EEEEEETTS-EEEEE.....E.EEEH CS
      DHC_N2  290 qlekiqksLneyLekkRlafpRFyFlsddeLleilsqskdpsavqphlkkcFegiaslefee......kkeitgmiskegEkvelse...argnvee 377 
                   le +qksL++yLe k+++fpRFyF+s  +L++ils+++   avqph++k  ++   ++ +       +  + g++s +gEk++ se   ++g+ve+
  KOO24774.1 1577 DLELCQKSLSDYLEVKKKKFPRFYFISSADLVDILSKGRYAPAVQPHFSKFTDATGFIDWAPdadgklTGLARGCQSIDGEKFAYSEhllCEGAVED 1673
                  **********************************************************998899998888899************99********** PP

                  HHHHHHHH CS
      DHC_N2  378 WLneleee 385 
                  WL  l + 
  KOO24774.1 1674 WLLVLMKH 1681
                  *9987665 PP

  == domain 3  score: -2.6 bits;  conditional E-value: 2
                  HHHHHHHHHHHHHHTTSGGGG...STT..HHHHH CS
      DHC_N2  253 svdkewkkimkevskdpnvleatskpg..llekl 284 
                  ++d ew + m+ v +d+++l++t++++  l +++
  KOO24774.1 2247 DIDAEWIESMNTVMDDNRILTLTTNERipLTKSM 2280
                  69*************999***9877764444444 PP

>> AAA_8  P-loop containing dynein motor region D4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  317.9   0.0     4e-98   4.5e-95       1     258 [.    2821    3078 ..    2821    3079 .. 0.99

  Alignments for each domain:
  == domain 1  score: 317.9 bits;  conditional E-value: 4e-98
       AAA_8    1 ldLvlfedaiehlarilRvlrqprghaLlvGvgGsGrqsltkLAafiaelelfqievtkkykekefredlkkllkkagikqkevvfllsdnqiiees 97  
                  ++Lvlf++a+eh++ri+R++++prg+ LlvGvgGsG+qslt+LAafi ++e+f+i++t++y+ ++f+edl++++ k+g+k  ++vfl++d+qi +e+
  KOO24774.1 2821 MNLVLFNQAMEHISRISRIIDNPRGNGLLVGVGGSGKQSLTRLAAFIGGCEIFSIKLTSSYNAADFKEDLRNIYLKTGVKAIPTVFLFTDQQIFHEN 2917
                  9************************************************************************************************ PP

       AAA_8   98 fledinnlLntGevpnLfskeekeeiieelrkeakkqgvedskesllnffikrvrenLhivlcmspvgeafrsrlrkfpsLvncttidwfqeWPeea 194 
                   l  +n++L+ G  p Lf++e+++ i++ +r++ak++g+ dske+l++ffi+rvr  Lhi+lcmspvg+++r+r+rkfp+L +ctt dwf +WP++a
  KOO24774.1 2918 ALIFLNDILSLGYPPGLFAEEDRDTICNGVRNDAKQAGYMDSKEQLWEFFINRVRAMLHICLCMSPVGDKMRNRCRKFPALTSCTTCDWFFNWPQQA 3014
                  ************************************************************************************************* PP

       AAA_8  195 LleVaekvleeeeeieeelkesivkvlvevhssveelsekfleelkrkiyvtpksylellktyk 258 
                  L +Vae++l++    + e+k++  +++++vh+sv  ++e++ ++ +r++y+tpksylel+ +yk
  KOO24774.1 3015 LISVAERFLSDIPMESPEVKKATGDHMAFVHESVGVAAEEYRASERREVYTTPKSYLELIALYK 3078
                  ***********9999999*********************************************9 PP

>> Dynein_C  Dynein heavy chain C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.4   0.0     0.067        75     202     232 ..    3375    3412 ..    3347    3418 .. 0.68
   2 !  268.2   0.0   7.6e-83   8.5e-80       2     307 .]    4246    4548 ..    4245    4548 .. 0.93

  Alignments for each domain:
  == domain 1  score: 2.4 bits;  conditional E-value: 0.067
                  ..............-EEE-SEEEESSEE..ETTCEE-S CS
    Dynein_C  202 a.......eeepedGvyihGLfleGarwdkkegvLaes 232 
                  +       +++     +i+GL  eG rw+++ g+L+e+
  KOO24774.1 3375 VtkaeatqKRANLANRLINGLSSEGKRWKEDVGKLDEQ 3412
                  03322221233334789******************997 PP

  == domain 2  score: 268.2 bits;  conditional E-value: 7.6e-83
                  HHHHHHHHHHHHCCCTTT-------..CCH--------------..----..........-HHHHHHHHHHHHHHHHHHHHHHHHHHHHC------- CS
    Dynein_C    2 keteellstllslqpressssgsggssreekvlelaadileklpelfdleeaekkpteyeeplntvllqElerfnkLleeirrsLkelqkaikGevv 98  
                   ++++l++ + +l p+  +++g+gg s +ekv+ +++dileklp+lf + e ++ ++e+ +p++ v+lqEler+n L+ e+rrsL el+ ++kG + 
  KOO24774.1 4246 MQANQLFTDISNLSPKG-GGGGEGGLSMTEKVKLVLDDILEKLPDLFPMLEIME-RVEDVTPYTGVFLQELERMNDLIFEVRRSLIELDSGLKGDLS 4340
                  5899************5.56667888899***************9887665444.599*************************************** PP

                  --HHHHHHHHHHHHTS--GGG.-----SS--HHHHHHHHHHHHHHHHHHH---.....B-GGGSS-HHHHHHHHHHHHHHHTT-----EE--EE--- CS
    Dynein_C   99 mseeleelansllngkvPesWakksypslkplgsWvrdLleRvkqlqkwleeegkPkvfwLsgfffPqaFLtavlqnyarknkipideltfefevtk 195 
                  ++e +e ++ +l +gkvP +W+k ++ s+ pl++W+++Ll R  ql +w+ +  +Pkv w+  +f+ qaF +av+q ++rkn +p+++l   ++vtk
  KOO24774.1 4341 ITEPMELIMYALADGKVPMKWEKLAWASRDPLSAWIANLLLRQGQLLTWTGDLAQPKVTWVAYLFNAQAFENAVKQVTSRKNDWPLNKLVTIVDVTK 4437
                  *********************999**************************44468****************************************** PP

                  .............-EEE-SEEEESSEE..ETTCEE-SS...SEEEES-EEEE-E----TS.....EEEEEESSTT--SE.........EEEEEE... CS
    Dynein_C  196 kekeeeaeeepedGvyihGLfleGarwdkkegvLaesepkelfselPvihlkpveakkkekkkkkyecPvYktseRrgvlstthstnfvfsvdLptk 292 
                  k+++ee++ + +dG+y+ GLf+eGarwd+ +g+L+++ +k+l+ ++Pvi +k++ a+k+ +++  y cPvYk++eR+   + t  + fvf ++L+tk
  KOO24774.1 4438 KMSPEEVDVQTRDGAYVFGLFMEGARWDSGAGCLEDAFMKDLYPKMPVILMKAILAEKE-DRRGVYLCPVYKQTERATPGTATPGSGFVFMMQLKTK 4533
                  *****************************************************987776.44446***********9765555899*********** PP

                  ..-BHHHTTT-EEES CS
    Dynein_C  293 kpeehwilrgvalll 307 
                  +p  +w+++gva+ll
  KOO24774.1 4534 QPAAKWTMAGVAMLL 4548
                  *************96 PP

>> MT  Microtubule-binding stalk of dynein motor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  265.6   5.3   5.2e-82   5.9e-79       2     342 ..    3094    3448 ..    3093    3450 .. 0.93

  Alignments for each domain:
  == domain 1  score: 265.6 bits;  conditional E-value: 5.2e-82
          MT    2 rlengllklqstaaqvddlkaklaaqevelkqknedadkliqvvgvetekvskekaiadeeekkvavinkevkkkqkdceedlakaepallaaqeal 98  
                  +l +gl+kl  + +qv d++  l  + + ++ k +++d+li vvg e+   + e a a  ee  va i k v++ q + ++dla aepa+  a +al
  KOO24774.1 3094 QLAEGLIKLADAEQQVADMQITLKEESAFVAVKSKETDELIIVVGKESIVATEEGAKAAIEEAEVAEIAKGVAEFQVQANKDLAAAEPAIQKAMAAL 3190
                  6889********************************************************************************************* PP

          MT   99 ntlnktnltelksfgsppdavvnvaaavmvllaprgkvpk..drswkaakivmakvdafldslinfdkenihenclkaikey.........lnd... 181 
                    lnk+ l elk +gspp av++v+aav  +lap+g   k  d +w  ak +m+   afl  l+n+dk+  + +  ka+ e           ++   
  KOO24774.1 3191 GGLNKAALGELKGLGSPPAAVLDVTAAVSYMLAPKGANLKklDITWNGAKKMMGDPAAFLVLLQNYDKDGFDLAA-KAMGENpmgltmghpSGNgda 3286
                  ************************************86654689************************9876443.444322111111111111234 PP

          MT  182 .pefepefikskslaaaglcswvinivrfyevycdvepkrqalekanaelaaaqeklaaikakiaelnanlaeltaafekatadklkcqqeaeatar 277 
                   p+f+  ++++ks aaaglc w++ni  ++++y dv+pkr  l++a+a+laaa++kla ++a++  l++ +a lt ++e at++k     +aeat++
  KOO24774.1 3287 cPTFNFAYMAGKSSAAAGLCDWIVNICIYHDIYLDVAPKRAKLNQAEADLAAANKKLAGVRAHVKALDDRMAFLTNQLETATSEKNALVTKAEATQK 3383
                  599********************************************************************************************** PP

          MT  278 tislanrlvgglasenvrwaeavenfksqektlcgdvllitafvsyvgfftkkyrqelldrlwlp 342 
                     lanrl+ gl+se  rw e v ++ +q + l gdvll ++fv+y+  f++++r+ l+d  w+p
  KOO24774.1 3384 RANLANRLINGLSSEGKRWKEDVGKLDEQMRLLVGDVLLSSSFVAYIAPFSRQFRDALVDEKWRP 3448
                  ****************************************************************9 PP

>> AAA_9  ATP-binding dynein motor region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.1      0.81   9.1e+02      53     177 ..     726     852 ..     650     864 .. 0.72
   2 !  206.3   0.0   2.8e-64   3.1e-61       3     220 .]    3476    3709 ..    3474    3709 .. 0.89

  Alignments for each domain:
  == domain 1  score: -1.2 bits;  conditional E-value: 0.81
                 STT..STTHHHHHHHHHHTTSEEEESTT.SSHHSTTHHHHTTCCEE....CEEEESSSE.EE--SSCEEEEEESSTTSHHHHHHHHHSEEEE---SSHH CS
       AAA_9  53 kls..dkkflktLenairfGkplliedvgeeldpiLepvLekeiikk.g.rkliklgdkeieysenFrLylttklsnphyspeiaakvtlinFtvteeG 147
                 +l+  ++ + + L   +   kpll   + + +d++L+  L+  + k+ +  +   +++    ++e F++  +  ++n++    i a+     F++  + 
  KOO24774.1 726 NLTlvQNMYNEMLRIMLDVEKPLLKGSM-KAIDKVLDRGLKGLVWKSpNpDQDAFIAEAMGLVEEAFKML-HEMKKNMNSVHAILARWVATPFITRASM 822
                 3334466778889999999999999888.99999999999999999643444555566666778888874.5555666667777777777777655444 PP

                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
       AAA_9 148 LedqlLaevvkkerpeleekkeeliqeeae 177
                  +   La  +++  + le ++++++   ++
  KOO24774.1 823 NKTYNLAAYMEEHMRYLEVRQKDITDGAKD 852
                 445567777777777777776666665555 PP

  == domain 2  score: 206.3 bits;  conditional E-value: 2.8e-64
                  HH.HT--STHHHHHHHHHHH..SSEEEEESSSTTHHHHHHH.......HEESTTSTTHHHHHHHHHHTTSEEEESTT.SSHHSTTHHHHTTCCEE.. CS
       AAA_9    3 WnlqgLPsDelsieNaiivtkserwPlliDPqgqankwiknkekek.lkviklsdkkflktLenairfGkplliedvgeeldpiLepvLekeiikkg 98  
                  W+ +gLP+D ls++Na i++k++r+Pl+iDPq+qa++wi+ +ek + l ++    k +l+++ +a++ G pll+e++++ +++iL++++++++++kg
  KOO24774.1 3476 WQAEGLPADPLSTQNASIICKCARFPLIIDPQMQAVAWINGREKPNgLVTTVPGAKGWLNKVAKALEEGLPLLLENLNSVVEAILDNLVARAYVRKG 3572
                  *****************************************977774777777799***************************************85 PP

                  .CEEEES..............SSE.EE-.-SSCEEEEEESSTTSHHHHHHHHHSEEEE---SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
       AAA_9   99 .rklikl..............gdkeiey.senFrLylttklsnphyspeiaakvtlinFtvteeGLedqlLaevvkkerpeleekkeeliqeeaenk 179 
                   + ++ l              g   +e  ++n + y++++l+nphy pe++a++tl+nFtvte+GLedqlL++vv +erp+l ++ +el++ ++ ++
  KOO24774.1 3573 tKVQVYLgdmcvdlclkkgpdGLA-LESgEPNIKVYMQSRLPNPHYIPEVQAQTTLVNFTVTEKGLEDQLLSTVVGHERPDLLKEAKELVEMQNGFT 3668
                  555555533333335555432222.2223789999************************************************************** PP

                  HHHHHHHHHHHHHHHHSSSSSSTHHHHHHHHHHHHHHHHHH CS
       AAA_9  180 kqlkeledklLeeLseaegniLedeelietLeksKktaeei 220 
                  ++lkel d+lL  L++a+g+iL +e+li tLe++K t  ei
  KOO24774.1 3669 IKLKELGDNLLYLLATAQGDILANEALIVTLEETKVTVGEI 3709
                  ***********************************997765 PP

>> AAA_7  P-loop containing dynein motor region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.0   0.0     0.028        32      28      77 ..    1857    1903 ..    1841    1911 .. 0.72
   2 ?   -2.6   0.0         3   3.4e+03      30      54 ..    2151    2175 ..    2144    2181 .. 0.82
   3 !  197.0   0.0   1.7e-61   1.9e-58       1     181 []    2465    2644 ..    2465    2644 .. 0.98

  Alignments for each domain:
  == domain 1  score: 4.0 bits;  conditional E-value: 0.028
       AAA_7   28 lllknkkpvllvGptGtGKtviikdllkkldkekylsltinfsaqtsanq 77  
                  + l+  +     Gp+GtGKt ++kdl + l+   + +++ n+s q++ + 
  KOO24774.1 1857 QALRLMMGGAPQGPAGTGKTETTKDLGRGLS---IWVIVSNCSDQMNNKV 1903
                  555555555567***************9999...7777777887777665 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 3
       AAA_7   30 lknkkpvllvGptGtGKtviikdll 54  
                  l+ ++ v++ G++G +K+ + k+l 
  KOO24774.1 2151 LSVRHCVFVLGTAGAAKSELWKTLA 2175
                  6778999***********9988765 PP

  == domain 3  score: 197.0 bits;  conditional E-value: 1.7e-61
       AAA_7    1 feideeakfseilVptvdtvrysyllelllknkkpvllvGptGtGKtviikdllkkldkekylsltinfsaqtsanqlqdiiesklekrrkgvygPp 97  
                  +++d+  ++ +i+Vpt d++r+ ++ +++lk kkp+++vG++G++Ktvi++ ll+ ld++ +++++i+f++ t a++lq ++e++lek++++++gPp
  KOO24774.1 2465 YTHDRAESYARIFVPTLDSTRLLWFSTTMLKLKKPIMYVGNSGSAKTVIANVLLRGLDEDVWMYNIISFNSFTIAASLQGMLEAPLEKKTGTIFGPP 2561
                  57888999***************************************************************************************** PP

       AAA_7   98 ggkklvvFvDDlnmpakekygaqppiellRqlldyggwYdrkklefkeikdvqlvaamgppgggrneitpRllrhfnvlaitep 181 
                  g kkl++F+DD+nmp ++kyg+q+ i ll ql dygg+Yd+k l +k+i ++ +vaam+p +g+ + ++ R++rhf++la ++p
  KOO24774.1 2562 GIKKLIYFIDDFNMPSPDKYGNQSSISLLNQLKDYGGFYDLKGLRMKRIDNTLVVAAMNPSSGS-FYVQDRMQRHFCTLATPFP 2644
                  ****************************************************************.**************99876 PP

>> AAA_lid_11  Dynein heavy chain AAA lid domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  150.1   0.0   4.2e-47   4.7e-44       1     164 []    4080    4239 ..    4080    4239 .. 0.91

  Alignments for each domain:
  == domain 1  score: 150.1 bits;  conditional E-value: 4.2e-47
                  HHHHHHHHCT.-HHHHT............HHHHHHHHHHHHHHHHHGGGGTTTS-SS-----HHHHHHHHHHHHHHHHHCSSGGS-HHHHHHHHHHT CS
  AAA_lid_11    1 kanllraysn.esekideeffee..keeefkkllfsLcffHavvqeRrkFgplGwnipYeFnesdleisvevlkmyldeyeekevpwealkyligei 94  
                  kanl+ray n  +     + +e   k++efk ++fsLcffH+vv eRrkFgplGwn  Y F  +dl+ s+ v ++yl+      +pw +l+yl+ge+
  KOO24774.1 4080 KANLKRAYLNfGE-----SLWEAssKQSEFKAIVFSLCFFHSVVCERRKFGPLGWNRAYPFAPGDLKDSIAVANNYLEAGG--AIPWADLRYLFGEV 4169
                  89******88533.....3333335999*************************************************9988..************** PP

                  TTSTT--SHHHHHHHHHHHHHHSSGGGGSTT...-T...E---SSHHHHHHHHCTS-SS--CCCCTS-TTH CS
  AAA_lid_11   95 nYGGrvtDdwDrrllktyleeffseevleeeyk.sgeykipeeksleeyleyieslpladspevfglhena 164 
                  +YGG++tD++Dr l+++yl  +++ e+le   +   ++  p + +++ yley+++  + ++p ++glh+na
  KOO24774.1 4170 FYGGHITDNYDRALCEAYLAVYLRFELLEGI-AmFPGFASPPTLTYKGYLEYLDEGLDRETPIAYGLHPNA 4239
                  ****************************644.434578889999**********9888************8 PP

>> Dynein_heavy  Dynein heavy chain region D6 P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  108.9   0.0   1.4e-34   1.6e-31       2     119 .]    3955    4079 ..    3954    4079 .. 0.95

  Alignments for each domain:
  == domain 1  score: 108.9 bits;  conditional E-value: 1.4e-34
                    TTS-EEEEE-TT--THHHHHHHHHHT........T--EEEEETTSHHHHHHHHHHHHHHHHT-EEEEE-GGG-CCCHHHHHHH.......HHTT- CS
  Dynein_heavy    2 pttPvlfilspgadptesleklakkl........kklvksvslGqgqeeeaekalekaakegsWvlLqNchlapswlkeLekileeleeklhssf 88  
                    p++P++f+lspg+d+t+++  l++ +        ++l  +vslGqgqe++aekal++ ++eg+W +L+N+ l++ wl++Lek le le++ ++ f
    KOO24774.1 3955 PAVPIFFLLSPGVDATQEVRVLGNAQpikmnedaGRL-ITVSLGQGQEPVAEKALDRMHTEGGWAMLENIELVAGWLPKLEKKLEALETDGDPLF 4048
                    689*********************8888888886556.9**********************************************999999**** PP

                    EEEEEEES-TTS-HHHHHTSEEEEE---SSH CS
  Dynein_heavy   89 RlwltsepspkfPislLqssikvtnepPkgl 119 
                    R++l+++p+p +P+ +Lq+sik+tnepP+gl
    KOO24774.1 4049 RVFLSAMPQPVVPVPILQKSIKLTNEPPTGL 4079
                    ****************************997 PP

>> AAA_lid_1  AAA+ lid domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.0       4.6   5.1e+03      46      64 ..     546     564 ..     540     570 .. 0.80
   2 !   88.5   0.1   2.4e-28   2.6e-25       1      98 [.    2675    2772 ..    2675    2774 .. 0.97

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 4.6
   AAA_lid_1  46 vlkapldlirlylheserv 64 
                 +    +dlir+y  e ++v
  KOO24774.1 546 LEAKQIDLIRIYADELKQV 564
                 556689******9998887 PP

  == domain 2  score: 88.5 bits;  conditional E-value: 2.4e-28
   AAA_lid_1    1 lvaaalalhkkiaatflptaikfhyvfnlrdlsnifqgllfssaevlkapldlirlylheservygdkmveekdlellekvtlevakkffddvedev 97  
                  l++  +alh+++a+ f+p+a+kfhy +nlr ++ +fqgl+ + +   k pl + rl lhe+ rvy d+mv e d e+++ + ++ +k+f+ d+++e+
  KOO24774.1 2675 LISFQVALHNQVAENFVPSAVKFHYQWNLRAMASVFQGLIITQPGTYKDPLRMARLLLHEAYRVYSDRMVFESDCEKFQELIIKNVKQFLGDLDQEA 2771
                  678899*****************************************************************************************98 PP

   AAA_lid_1   98 l 98  
                  l
  KOO24774.1 2772 L 2772
                  7 PP

>> Dynein_AAA_lid  Dynein heavy chain AAA lid domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   77.0   0.0   1.2e-24   1.3e-21       1     123 [.    2332    2449 ..    2332    2460 .. 0.90

  Alignments for each domain:
  == domain 1  score: 77.0 bits;  conditional E-value: 1.2e-24
  Dynein_AAA_lid    1 leelfeklvepclefv.rkkckeivpvtdlnlvqslcrllealldefeekeeesadeeleeeeleevleklflfalvWSiGatldeds....r 88  
                      le+lf++lv p+l ++ ++k+++++p+ dl +v+ +cr+lea+l++          e+  + + +ev+e+ f fa vW+iG+++ +d+    r
      KOO24774.1 2332 LEQLFDTLVAPTLSMIkKEKWNHVTPLKDLGIVEVICRILEAVLTP----------EACPPGSEREVYEAFFQFAAVWGIGGAFGSDKgadfR 2414
                      79**************77889*************************..........356788899********************9999**** PP

  Dynein_AAA_lid   89 ekfdeflrellee.alklppeegtvyDyffdketgk 123 
                      ++fd+++r+ +++ ++++p +eg+++Dy++d++t+k
      KOO24774.1 2415 KQFDSYWRTEFAKlTMRFP-DEGSIFDYYIDPTTKK 2449
                      **********88889***9.***********99764 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.7   0.1      0.22   2.4e+02       6      36 ..    1869    1899 ..    1868    1989 .. 0.60
   2 !   26.5   0.0   4.8e-09   5.4e-06       2     107 ..    2157    2278 ..    2156    2300 .. 0.87
   3 !   16.4   0.0   6.2e-06    0.0069       3     128 ..    2501    2626 ..    2499    2636 .. 0.83
   4 !    9.5   0.0   0.00083      0.93       3      46 ..    2848    2891 ..    2846    2926 .. 0.84

  Alignments for each domain:
  == domain 1  score: 1.7 bits;  conditional E-value: 0.22
                  --SSSSHHHHHHHGGGGBS--EEEEE--TT- CS
       AAA_5    6 GppGtgKselaerlaaalnreveyvqltrdt 36  
                  Gp GtgK+e ++ l + l   v + ++++++
  KOO24774.1 1869 GPAGTGKTETTKDLGRGLSIWVIVSNCSDQM 1899
                  7777777777666655554444444444443 PP

  == domain 2  score: 26.5 bits;  conditional E-value: 4.8e-09
                  EEEE--SSSSHHHHHHHGGGGB......S--EEEE.E--TT--HHHHH--B--.........--------..............G-SEEEEESGGG- CS
       AAA_5    2 vlLvGppGtgKselaerlaaal......nreveyv.qltrdtteedlkgrreikngttslvdsplvraar..............egeilvlDEvera 77  
                  v+++G  G +Ksel++ laaa       + +++y  ++++  t+++l g ++  + t++  d+++ + +r               ++++++++++  
  KOO24774.1 2157 VFVLGTAGAAKSELWKTLAAAQsftsmgGGNTLYNpLNPKAVTSNELYGYVH--PVTKEPYDGVIAKIMRdfaavppdhknanvPKWMVLDGDID-- 2249
                  799******************9999***66666661556899**********..6*****************************9**********.. PP

                  -HHHHHHHHHHHHSSEEE..-SSSEEE--- CS
       AAA_5   78 esevlnsLlslleerrllleeggelvkakn 107 
                    e+++s++++++++r+l+   +e++   +
  KOO24774.1 2250 -AEWIESMNTVMDDNRILTLTTNERIPLTK 2278
                  .*****************999999987655 PP

  == domain 3  score: 16.4 bits;  conditional E-value: 6.2e-06
                  EEE--SSSSHHHHHHHGGGGB...S--EEEEE--TT--HHHHH--B--.........--------G-SEEEEESGGG--HHHHHHHHHHHHSSEEE. CS
       AAA_5    3 lLvGppGtgKselaerlaaal...nreveyvqltrdtteedlkgrreikngttslvdsplvraaregeilvlDEveraesevlnsLlslleerrlll 96  
                  + vG++G++K+ +a  l++ l    + ++++ ++++t ++ l+g +e     ++ +  ++   + ++ i+++D++++ +++  +   s+   ++l  
  KOO24774.1 2501 MYVGNSGSAKTVIANVLLRGLdedVWMYNIISFNSFTIAASLQGMLEA--PLEKKTGTIFGPPGIKKLIYFIDDFNMPSPDKYGNQSSISLLNQLK- 2594
                  669******************9888999999****************4..666666777777788******************9999998888888. PP

                  .-SSSEEE---.........-EEEEEESS--.-TT CS
       AAA_5   97 eeggelvkaknddller...frviatanpldrsln 128 
                  + gg++  +     ++r   + v+a++np + ++ 
  KOO24774.1 2595 DYGGFYDLKGLR--MKRidnTLVVAAMNPSS-GSF 2626
                  788888877774..455555********998.444 PP

  == domain 4  score: 9.5 bits;  conditional E-value: 0.00083
                  EEE--SSSSHHHHHHHGGGGBS--EEEEE--TT--HHHHH--B- CS
       AAA_5    3 lLvGppGtgKselaerlaaalnreveyvqltrdtteedlkgrre 46  
                  lLvG  G+gK +l++  a   ++e++ + lt++++++d+k  ++
  KOO24774.1 2848 LLVGVGGSGKQSLTRLAAFIGGCEIFSIKLTSSYNAADFKEDLR 2891
                  8************99888888*****************998765 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6   0.0    0.0091        10       5      41 ..    1869    1906 ..    1868    1940 .. 0.87
   2 ?    3.0   0.0      0.11   1.2e+02       2      94 ..    2501    2594 ..    2500    2636 .. 0.70
   3 ?    1.5   0.0      0.34   3.8e+02       2      67 ..    2848    2925 ..    2847    2941 .. 0.75

  Alignments for each domain:
  == domain 1  score: 6.6 bits;  conditional E-value: 0.0091
                  SSTTSSHHHHHHHHHHHHTHEEEEEETTTCS.SSSTTH CS
         AAA    5 GppGtGKTllakavakelgvefleisgsell.skyvge 41  
                  Gp GtGKT + k + + l++ ++  ++s+ + +k+ g+
  KOO24774.1 1869 GPAGTGKTETTKDLGRGLSIWVIVSNCSDQMnNKVTGN 1906
                  9***************************9996665554 PP

  == domain 2  score: 3.0 bits;  conditional E-value: 0.11
                  EEESSTTSSHHHHHHHHHHHHT.....HEEEEEETTTCSSSSTTHHHHHHHHHHHHHHHTS..TSEEEEEETGGGHHHHHTTCCCHHHHHHHHHHHH CS
         AAA    2 llyGppGtGKTllakavakelg.....vefleisgsellskyvgesekkirelfkeakeka..kpsilfiDEidalaksrsgseseeeervvnqLlt 91  
                  + +G+ G  KT +a+ + + l+      ++++++  ++  +++g  e+ +++   ++      k+ i fiD++    +++       +++    Ll+
  KOO24774.1 2501 MYVGNSGSAKTVIANVLLRGLDedvwmYNIISFNSFTIAASLQGMLEAPLEKKTGTIFGPPgiKKLIYFIDDFNMPSPDK------YGNQSSISLLN 2591
                  5689****************974444466777777777766666666666666655544447878999999999888888......44444444455 PP

                  HHH CS
         AAA   92 eld 94  
                  +l+
  KOO24774.1 2592 QLK 2594
                  444 PP

  == domain 3  score: 1.5 bits;  conditional E-value: 0.34
                  EEESSTTSSHHHHHHHHHHHHTHEEEEEETTTCSSS..........STTHHHHHHHHHHHHHHHTS..TSEEEEEETG CS
         AAA    2 llyGppGtGKTllakavakelgvefleisgsellsk..........yvgesekkirelfkeakeka..kpsilfiDEi 67  
                  ll+G  G GK +l +  a   g e+++i++++  +           y++ + k i  +f    ++   +   +f+ +i
  KOO24774.1 2848 LLVGVGGSGKQSLTRLAAFIGGCEIFSIKLTSSYNAadfkedlrniYLKTGVKAIPTVFLFTDQQIfhENALIFLNDI 2925
                  89******************9*********999965566666666666666666666664444333544466666555 PP

>> Fur_reg_FbpB  Fur-regulated basic protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.3   0.5      0.22   2.5e+02       8      22 ..    2752    2766 ..    2750    2772 .. 0.88
   2 ?    7.5   0.1    0.0026       2.9       6      29 ..    3068    3091 ..    3060    3097 .. 0.86

  Alignments for each domain:
  == domain 1  score: 1.3 bits;  conditional E-value: 0.22
  Fur_reg_FbpB    8 FeeLVeeNKkeLlnD 22  
                    F+eL+ +N k+ l D
    KOO24774.1 2752 FQELIIKNVKQFLGD 2766
                    **********99987 PP

  == domain 2  score: 7.5 bits;  conditional E-value: 0.0026
  Fur_reg_FbpB    6 lsFeeLVeeNKkeLlnDpeamekI 29  
                    +s+ eL++ +K+eLl++++ + ++
    KOO24774.1 3068 KSYLELIALYKDELLKNRSTLQVL 3091
                    8999**************999877 PP

>> PPR_1  PPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6   1.0    0.0057       6.4      21      34 .]     785     798 ..     784     798 .. 0.94
   2 ?    2.4   0.1      0.11   1.3e+02      18      34 .]    1748    1764 ..    1748    1764 .. 0.96

  Alignments for each domain:
  == domain 1  score: 6.6 bits;  conditional E-value: 0.0057
                 S-HHHHHHHHHHHH CS
       PPR_1  21 GrvdeAfelfdeMe 34 
                 G+v+eAf+++ eM+
  KOO24774.1 785 GLVEEAFKMLHEMK 798
                 99***********7 PP

  == domain 2  score: 2.4 bits;  conditional E-value: 0.11
                  HHTS-HHHHHHHHHHHH CS
       PPR_1   18 CkaGrvdeAfelfdeMe 34  
                  Ck+G++  A  ++ eM+
  KOO24774.1 1748 CKKGLLAYAAMVLGEMS 1764
                  ****************5 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (4551 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       726  (0.0404931); expected 358.6 (0.02)
Passed bias filter:                      558  (0.0311228); expected 358.6 (0.02)
Passed Vit filter:                        69  (0.00384851); expected 17.9 (0.001)
Passed Fwd filter:                        21  (0.00117129); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              16  [number of targets reported over threshold]
# CPU time: 1.91u 0.34s 00:00:02.25 Elapsed: 00:00:00.55
# Mc/sec: 24693.10
//
Query:       KOO24775.1  [L=662]
Description: hypothetical protein Ctob_006309 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
     0.0017   18.3   1.9     0.0038   17.2   1.9    1.5  1  PAN_1     PAN domain


Domain annotation for each model (and alignments):
>> PAN_1  PAN domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   1.9   2.1e-07    0.0038      23      73 ..     217     262 ..     203     268 .. 0.82

  Alignments for each domain:
  == domain 1  score: 17.2 bits;  conditional E-value: 2.1e-07
                 SHHHHHHHHHHSTTS--SEEEEETTTTEEEEEESSSSSCSSEEEEEEEEEE CS
       PAN_1  23 saeeCaerCseekkfrCrsftfnnstkeCylksedktsltprltpksqkvd 73 
                  ++ C+ +Cs  ++  Cr+++f ++ k C +++   ts   +l+++ ++++
  KOO24775.1 217 ALRACLDHCSRCAR--CRFVSFSQQWKDCSWYHTCNTS---SLQRDVPNFQ 262
                 6789**********..****************998887...5555544444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (662 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       542  (0.0302304); expected 358.6 (0.02)
Passed bias filter:                      337  (0.0187964); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.56u 0.28s 00:00:00.84 Elapsed: 00:00:00.44
# Mc/sec: 4489.58
//
Query:       KOO24776.1  [L=215]
Description: hypothetical protein Ctob_006308 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (215 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       634  (0.0353617); expected 358.6 (0.02)
Passed bias filter:                      290  (0.0161749); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.42u 0.22s 00:00:00.64 Elapsed: 00:00:00.39
# Mc/sec: 1655.03
//
Query:       KOO24777.1  [L=863]
Description: hypothetical protein Ctob_006310 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.096   13.1   0.0       0.27   11.6   0.0    1.7  1  OmpA      OmpA family


Domain annotation for each model (and alignments):
>> OmpA  OmpA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   1.5e-05      0.27      17      77 ..     555     635 ..     548     657 .. 0.69

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 1.5e-05
                 HHHHHHHHH.S-S--EEEEE---S---HHH.................HHHHHHHHHHHHHHHHHHTTSSGGGEEE..EE-T CS
        OmpA  17 ldkiaellk.kpeqkitveGhtdaagseer.................nweLSqkRAeaVanylqnegvppsrisv..sgyG 77 
                 l+ ia++lk  p+   +v G t++a s++                     L+ kRA+a  ++l++egvp++++ v  +g+G
  KOO24777.1 555 LQGIARILKeYPQVLCEVHGETGRANSAPMplaellrldpvrdvakcMGILAHKRAQACLDALVAEGVPQEQLFVthKGMG 635
                 666777777333333777777777444444444444444444455557789**********************87334554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (863 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       262  (0.0146132); expected 358.6 (0.02)
Passed bias filter:                      210  (0.0117129); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.59u 0.23s 00:00:00.82 Elapsed: 00:00:00.40
# Mc/sec: 6440.01
//
Query:       KOO24778.1  [L=617]
Description: hypothetical protein Ctob_006307 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.6e-56  191.2   1.5    2.6e-56  191.2   1.5    1.5  2  PfkB            pfkB family carbohydrate kinase
    7.4e-45  152.7   0.0    1.1e-44  152.1   0.0    1.3  1  Rib_5-P_isom_A  Ribose 5-phosphate isomerase A (phosphoribois
      4e-07   29.7   0.0    7.5e-07   28.8   0.0    1.4  1  Phos_pyr_kin    Phosphomethylpyrimidine kinase
  ------ inclusion threshold ------
      0.034   14.1   0.1        8.5    6.3   0.0    2.7  2  DeoRC           DeoR C terminal sensor domain
      0.066   12.9   0.2       0.22   11.2   0.1    1.9  2  MoCF_biosynth   Probable molybdopterin binding domain


Domain annotation for each model (and alignments):
>> PfkB  pfkB family carbohydrate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  191.2   1.5   7.1e-60   2.6e-56       1     292 [.       1     293 [.       1     300 [. 0.90
   2 ?   -3.8   0.0       1.6   5.9e+03     207     243 ..     527     568 ..     521     573 .. 0.61

  Alignments for each domain:
  == domain 1  score: 191.2 bits;  conditional E-value: 7.1e-60
                 EEEEEEEEEEEEEEEEECSSH..TTSEEEESEEEEEEESHHHHHHHHHHHTT-EEEEEEEEESSHHHHHHHHHHHHTTEEETTEEEESSSEEEEEEEEE CS
        PfkB   1 mtkvvviGealidliavsekl..egelvevktveksaGGagaNvAvalarlgadvafigavGdDnfGeflleelkkegvdtdyvkidedtrtglalivv 97 
                 m+ v v+G+a++dl+ +  +   +ge+ ++ ++e+ +GG+gaN+Ava+a lg +v+++ ++G D +Ge  l+++k+ gvdt+++  ++d+  g+a+ivv
  KOO24778.1   1 MKGVIVVGSANVDLVTNAPRMpnPGETLHGTRFEQLFGGKGANQAVAAALLGSSVTMVAKLGEDSLGEASLANFKALGVDTSFISTTPDAASGVAAIVV 99 
                 67799*****************999999*********************************************************************** PP

                 TTTSEEEEEEEEGGGGGHHHHHHHHHHHHHGCTSEEEEES..EECTTSHHHHHHHHHHHHHHTTEEEEEECESSSHHHHHHHHHHHCTESEEEEEHHHH CS
        PfkB  98 dedgertivfnrgaaadltkeeleededlleeadllyisg..llsselpeavleelaeaaknggtfdpnlldplgaqfkeallellaladllkpneeEl 194
                 d+ g+++iv+  ga+  l+        d  ++a  +  sg  l + e+p a+  ++  a + +g ++   ++p+++   +  +el  l+d+++pne+E 
  KOO24778.1 100 DSSGQNEIVIVAGANGLLSAM------DVAAAAPAFERSGvlLTQLEVPLATTIAALRAGRRAGLVTVFNSAPAPS--EPLPDELYMLCDIICPNETET 190
                 ********************4......6677888888888777788888888888888888888655455666665..68889999************* PP

                 HHHHTSCTHSHHHHHHHHHHHHHTTSSEEEEEEGGGEEEEEE..TTEEEEEEE....SSSS-SBGTTHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHH CS
        PfkB 195 ealtgekledieealaalhklkakgaktvvvtlGkeGalvve..kdgelkvpav...pkvkvvDttGAGDsfvggflaallegksleealrfanavAal 288
                 + ltg++ ++ e++ aa+ ++++kgak vv tlG++G+ +v   ++  l+vp     + +kv DttGAGD f gg++   ++g +l +al  a++vA++
  KOO24778.1 191 ALLTGMPTNTLEQCEAAARAIIKKGAKSVVLTLGERGCMLVRegNVPALHVPVPedmRDIKVLDTTGAGDGFLGGLAHLVASGLPLVDALPGAVRVASI 289
                 *****************************************9865555555543334679*************************************** PP

                 HHTS CS
        PfkB 289 vvqk 292
                 ++  
  KOO24778.1 290 SAAA 293
                 9865 PP

  == domain 2  score: -3.8 bits;  conditional E-value: 1.6
                 HHHHHHHHHHHT.TS.SEEEEEEGGGEEEEEE...TTEEEEE CS
        PfkB 207 ealaalhklkak.ga.ktvvvtlGkeGalvve...kdgelkv 243
                 +++aa+ +lka+ g+ ++ ++ +G++ +l+v+   ++ ++  
  KOO24778.1 527 DVAAAAAELKATvGVvEHGLFVRGANSVLLVStpaGVSTVAP 568
                 555555555544144788888888888888886555544444 PP

>> Rib_5-P_isom_A  Ribose 5-phosphate isomerase A (phosphoriboisomerase A)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  152.1   0.0     3e-48   1.1e-44       2     168 ..     378     556 ..     377     562 .. 0.94

  Alignments for each domain:
  == domain 1  score: 152.1 bits;  conditional E-value: 3e-48
                     EEESSHHHHHHHHHTT--BE-GGCCSSEEEEEE--SEEETTS-EE--TTS-HHHHHHHHHTEEEEEEEEEGGGBESSTT.SS-EEEEE-GGGHHH CS
  Rib_5-P_isom_A   2 gvptSeqteelaeelgipllsldeveeidlaiDGaDevdedlnliKGgGgallrEKivaaaakkfiviadesKlveklg.kfpvPveVlpfalea 95 
                     +vp+S +te++++e g+p +s ++ + i +ai  aD vd + n+iKGg+gallrEK++   a ++iv +de Kl++klg + p+PveV pf +++
      KOO24778.1 378 AVPSSAKTERKLREKGVPCVSSETQPAIAVAIGSADAVDAEGNVIKGGKGALLREKLLRDQATRYIVAVDEAKLCSKLGaSYPIPVEVAPFYAQR 472
                     79*****************************************************************************77************** PP

                     HHHHHHHT...TT-EEEE-TE........TTTTEE-B-TTS-EEEEEESSSBSSSHHHHHHHHHTSTTEEEESEE-S--SEEEE CS
  Rib_5-P_isom_A  96 varelekl...lggkpelRea........kgkdgpvvTdngnlilDvkfeekiedpeelekelksipGVvetGlFlgladkvlv 168
                     + r++ +l   + ++++lR +         g+  p+vTdngnli+D+  +++++d+++ ++elk+++GVve+GlF++ a++vl+
      KOO24778.1 473 TVRSIMALpslHPCDAQLRFGdsptgmpgVGSITPFVTDNGNLIVDIFRTTPLKDVAAAAAELKATVGVVEHGLFVRGANSVLL 556
                     *****97777677899***999999998877889*************9999999**********************98888765 PP

>> Phos_pyr_kin  Phosphomethylpyrimidine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.8   0.0   2.1e-10   7.5e-07     112     224 ..     172     283 ..     164     298 .. 0.70

  Alignments for each domain:
  == domain 1  score: 28.8 bits;  conditional E-value: 2.1e-10
                   HHHHTGGG-SEEE-BHHHHHHHHT---SSHHHHHHHHHHHHHTT-SEEEEEEGGS-SSSEEEEEEEETSSEEEEE......EEE----S--BTHHHH CS
  Phos_pyr_kin 112 lkeeLlplatvitPNlpEaeaLlgekikteedmkeaakkllklgakaVlikGghlegeeavvtdvlydgeeveel......eaerietknthGtGCt 202
                   l +eL  l+++i PN  E++ L+g++ +t+e++++aa++++k gak+V+++ g+          +l+++++v  l      + + i+  +t G+G+ 
    KOO24778.1 172 LPDELYMLCDIICPNETETALLTGMPTNTLEQCEAAARAIIKKGAKSVVLTLGERGC-------MLVREGNVPALhvpvpeDMRDIKVLDTTGAGDG 261
                   6688999*******************************************9887422.......222222222220000002334555567788877 PP

                   HHHHHHHHHHCTSSHHHHHHHH CS
  Phos_pyr_kin 203 lssaiaaelakgesleeAvkkA 224
                   +   +a  +a g +l +A+  A
    KOO24778.1 262 FLGGLAHLVASGLPLVDALPGA 283
                   6666666666666666665554 PP

>> DeoRC  DeoR C terminal sensor domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.9   0.0    0.0063        22       4      41 ..     329     367 ..     326     393 .. 0.85
   2 ?    6.3   0.0    0.0024       8.5      93     139 ..     405     451 ..     396     459 .. 0.91

  Alignments for each domain:
  == domain 1  score: 4.9 bits;  conditional E-value: 0.0063
       DeoRC   4 eeKrrIAkaAae.liedgdtifldaGtTtlelaraLaek 41 
                 + Kr+ A  A++ ++++g+ + +++G T+++ +++L+e+
  KOO24778.1 329 RLKRAAAYHAIDtYVQSGMLVGIGTGDTAEYAIQRLKER 367
                 56888888887538**********************987 PP

  == domain 2  score: 6.3 bits;  conditional E-value: 0.0024
       DeoRC  93 vdkaflgangidaegglttsdeeeaevkralieaarrvillaDssKf 139
                 + +a+ +a+++daeg++++        ++ l ++a+r i+++D+ K+
  KOO24778.1 405 IAVAIGSADAVDAEGNVIKGGKGALLREKLLRDQATRYIVAVDEAKL 451
                 678999**************************************997 PP

>> MoCF_biosynth  Probable molybdopterin binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.1   6.1e-05      0.22      11      68 ..      59     116 ..      49     162 .. 0.83
   2 ?   -2.4   0.0      0.96   3.4e+03      68     103 ..     351     404 ..     349     482 .. 0.45

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 6.1e-05
                    TTSSGBHHHHHHHHHHHTTSEEEEEEEEE-SSHHHHHHHHHHHHHTSSEEEEESS-SS CS
  MoCF_biosynth  11 sgkieDtngpllaellkelgvevskytvvpDdeeeikeallaaleeadviittGGtGp 68 
                    ++  eD+ g    + +k+lgv++s +++ pD  + +++ + ++  +++++i+ G  G+
     KOO24778.1  59 AKLGEDSLGEASLANFKALGVDTSFISTTPDAASGVAAIVVDSSGQNEIVIVAGANGL 116
                    666789999999999*************************8887777*******9885 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 0.96
                    SSTT--HHHHHHHHHSEE-HHHHHHHHHHHHHHCC.....................T CS
  MoCF_biosynth  68 ptpdDvtpealaklfekelegfeeafrrvslkpgk.....................p 103
                    ++  D    a+++l e+ + g    ++rvs+ p +                      
     KOO24778.1 351 IGTGDTAEYAIQRLKERLASGA---LERVSAVPSSakterklrekgvpcvssetqpA 404
                    5555555555555555533332...23332222222223334433333333333330 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (617 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       459  (0.025601); expected 358.6 (0.02)
Passed bias filter:                      313  (0.0174578); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.52u 0.25s 00:00:00.77 Elapsed: 00:00:00.40
# Mc/sec: 4675.04
//
Query:       KOO24779.1  [L=128]
Description: hypothetical protein Ctob_006306 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
     0.0014   18.3   6.8     0.0019   17.9   6.8    1.1  1  DUF4203          Domain of unknown function (DUF4203)
  ------ inclusion threshold ------
      0.076   13.1   5.1       0.21   11.6   5.1    1.8  1  Phage_holin_3_6  Putative Actinobacterial Holin-X, holin supe
        2.5    8.1   4.9          4    7.4   4.9    1.3  1  SLATT_fungal     SMODS and SLOG-associating 2TM effector doma


Domain annotation for each model (and alignments):
>> DUF4203  Domain of unknown function (DUF4203)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.9   6.8   3.1e-07    0.0019     111     201 .]      10      96 ..       2      96 .. 0.76

  Alignments for each domain:
  == domain 1  score: 17.9 bits;  conditional E-value: 3.1e-07
     DUF4203 111 iflvivvlgllgavlslklqklllivatsvvGaaavvlgiDyfvgaglkefll..nlfpratvalltypltrgdwvllalwivlalvGvlvQf 201
                  fl+i++ gllga l +k+q+ l +vats +Ga  +v++  + + +    fl   ++  r++ + ++++++++      ++ vl+l+G++vQ+
  KOO24779.1  10 QFLSIMIGGLLGAGLVVKFQQNLFMVATSALGACGTVAATALLLAHVDPRFLSslHMSIRIN-GSYDFVWPQA-----LAVFVLFLLGIFVQC 96 
                 34789***************************************998555554444443333.3444444444.....56668889******8 PP

>> Phage_holin_3_6  Putative Actinobacterial Holin-X, holin superfamily III
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   5.1   3.6e-05      0.21      40      94 ..      37     106 ..       8     117 .. 0.70

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 3.6e-05
  Phage_holin_3_6  40 lgaagvlallalllllvala...........lalaa.....lwlaalivaavllvlagvlalvglkklkka 94 
                        a g+++ +a+++ll+a +           + +        w  al v++++l+   v  +++ +k k++
       KOO24779.1  37 TSALGACGTVAATALLLAHVdprflsslhmsIRI-NgsydfVWPQALAVFVLFLLGIFVQCRMAARKRKRM 106
                      2233444444444444444488777666644222.244678****************99999999988874 PP

>> SLATT_fungal  SMODS and SLOG-associating 2TM effector domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.4   4.9   0.00067         4      22      64 ..       8      52 ..       2      57 .. 0.80

  Alignments for each domain:
  == domain 1  score: 7.4 bits;  conditional E-value: 0.00067
  SLATT_fungal 22 laiglQvllgAlltaLgalssgr..tqvaitvLGalnTviAglLA 64
                  l+ +l +++g ll a   ++ ++    va+++LGa +Tv A+ L 
    KOO24779.1  8 LMQFLSIMIGGLLGAGLVVKFQQnlFMVATSALGACGTVAATALL 52
                  566788889988877777766555899**************9885 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (128 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       844  (0.0470746); expected 358.6 (0.02)
Passed bias filter:                      526  (0.0293379); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.42u 0.26s 00:00:00.68 Elapsed: 00:00:00.41
# Mc/sec: 931.67
//
Query:       KOO24780.1  [L=509]
Description: beta-n-acetylhexosaminidase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.7e-59  200.9   0.0    4.9e-59  200.5   0.0    1.1  1  Glyco_hydro_20   Glycosyl hydrolase family 20, catalytic doma
    8.1e-06   26.5   0.0    1.9e-05   25.3   0.0    1.7  1  Glycohydro_20b2  beta-acetyl hexosaminidase like
  ------ inclusion threshold ------
      0.031   14.1   3.8       0.26   11.1   2.0    2.3  2  GspL_C           GspL periplasmic domain


Domain annotation for each model (and alignments):
>> Glyco_hydro_20  Glycosyl hydrolase family 20, catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  200.5   0.0   8.2e-63   4.9e-59       1     286 [.      59     371 ..      59     407 .. 0.89

  Alignments for each domain:
  == domain 1  score: 200.5 bits;  conditional E-value: 8.2e-63
  Glyco_hydro_20   1 fkyRGlmlDvaRhflsvee.ikrliDamaaaKlNvlHwHltDdqgwrleikkyPeLtekgakreskeseeelsgfYtkedireiveYAaergieV 94 
                     +++RG++lD+aRhf+++e+ ++ l+D maa KlNvlHwHl+D+++ +l  +++      ga ++s         +Y+ +d+r +v+ A ergi+V
      KOO24780.1  59 YSHRGVLLDTARHFYPLETaVLPLLDGMAALKLNVLHWHLSDAHSAPLGSTALA----SGALHPSL--------MYSASDMRAVVAAAFERGIRV 141
                     89**************986599**************************998864....69999988........********************* PP

  Glyco_hydro_20  95 ipEidmPgHaraalkaypelvtkekae.qsveqsvqvevkesvlnptneetyeflekvldevaelfpseyvHiGGDEvkkkqwkkspeiqalike 188
                     +pE+dmP+H++a++  +pe v + +++ +   +  + + ++  l+p  e tye ++++l+e+a +fp+ey+H+GGDEv  ++w ++  i+a+ ++
      KOO24780.1 142 VPELDMPAHTSAWAFGLPEAVVTCPKRvTADVEGLEHGANKAALHPLREATYEAVSTLLHELAAIFPDEYLHLGGDEVDGECWLSDADIRAWASQ 236
                     *******************99883333033344778999999************************************************99987 PP

  Glyco_hydro_20 189 eglks...................veelqsyfvkrvekilkekgkkligWdeilekgka...................sklakknttvqsWrele 245
                        ++                   +++lq++f++rv +  ++ gk++++Wde le ++                    +++   ++t+ +Wr++ 
      KOO24780.1 237 FSEQEqqqqrtgnrrrrpfpptewTHALQAQFTRRVGRLAASMGKRVVMWDEALEVAQLledgplhageaqasldggaATFGRTDVTIDVWRDWI 331
                     66444567899*********************************************99457899*************99999999********** PP

  Glyco_hydro_20 246 keaaeklakkgydvilspadalYlDfgqekkeeeegleiat 286
                     +   +++++ g+dv+ s+   +YlD + +++e+ +++e   
      KOO24780.1 332 HGRRQRALHDGHDVVWSS-LKWYLDLPGNTWEAMYQVELPA 371
                     99***************8.69********999988776544 PP

>> Glycohydro_20b2  beta-acetyl hexosaminidase like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.3   0.0   3.3e-09   1.9e-05     102     137 .]       1      36 [.       1      36 [. 0.91

  Alignments for each domain:
  == domain 1  score: 25.3 bits;  conditional E-value: 3.3e-09
  Glycohydro_20b2 102 vdEsYtLsvksasg.sakisansvlGalhGLeTlqQL 137
                      +dEsYtL++   +g   +++a s +Gal+G e++ QL
       KOO24780.1   1 MDESYTLEL-GVDGsDGTLTAISEWGALRGIESFVQL 36 
                      59*******.555559********************8 PP

>> GspL_C  GspL periplasmic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   2.0   4.3e-05      0.26      27      92 ..     232     297 ..     228     308 .. 0.79
   2 ?    2.2   0.0     0.024   1.4e+02      20      54 ..     473     507 ..     457     509 .] 0.82

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 4.3e-05
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXX---HHHHHHHHHHHHHHH CS
      GspL_C  27 lqlyqlerqaqalraqseeiyqqlfPeekrildlraqmrkqlrrl.agkasgdallkllaalqtale 92 
                 ++++q ++q+q+ ++   ++ ++ fP+++ ++ l+aq+++++ rl a+ ++ + + + +  ++++le
  KOO24780.1 232 AWASQFSEQEQQQQRTGNRR-RRPFPPTEWTHALQAQFTRRVGRLaASMGKRVVMWDEALEVAQLLE 297
                 57889999999988877776.599*********************5555566666777777777766 PP

  == domain 2  score: 2.2 bits;  conditional E-value: 0.024
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
      GspL_C  20 vvvaerllqlyqlerqaqalraqseeiyqqlfPee 54 
                 ++ a  ++++ +l +  ++l++q  + + +++P++
  KOO24780.1 473 LLNALLVYAIVRLVKRVDRLSRQNGQPLTKAMPQK 507
                 44556788999**********************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (509 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       526  (0.0293379); expected 358.6 (0.02)
Passed bias filter:                      409  (0.0228122); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.52u 0.25s 00:00:00.77 Elapsed: 00:00:00.41
# Mc/sec: 3705.68
//
Query:       KOO24781.1  [L=649]
Description: hypothetical protein Ctob_006304 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
  ------ inclusion threshold ------
        1.1    9.5   3.7         28    5.0   0.1    3.6  4  Phenyl_P_gamma  Phenylphosphate carboxylase gamma subunit (Ph


Domain annotation for each model (and alignments):
>> Phenyl_P_gamma  Phenylphosphate carboxylase gamma subunit (Phenyl_P_gamma)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.0      0.13   2.3e+03      18      58 ..     100     140 ..      95     153 .. 0.77
   2 ?    5.0   0.1    0.0015        28      37      77 ..     180     220 ..     162     224 .. 0.86
   3 ?   -2.8   0.0       0.4   7.1e+03      42      57 ..     325     340 ..     317     341 .. 0.79
   4 ?    2.8   0.2    0.0072   1.3e+02      10      63 ..     366     418 ..     363     428 .. 0.81

  Alignments for each domain:
  == domain 1  score: -1.2 bits;  conditional E-value: 0.13
  Phenyl_P_gamma  18 elelsvrtlndglkkytyqrvkvelsskldkfpdrlqvrlg 58 
                     e  l+  +l+    k + ++ + +l sk+d+  d+++ rl 
      KOO24781.1 100 EKALTALALETQRDKAAMEKRQEQLDSKMDHAFDKVDQRLE 140
                     55666677777777888888888999999999999888875 PP

  == domain 2  score: 5.0 bits;  conditional E-value: 0.0015
  Phenyl_P_gamma  37 rvkvelsskldkfpdrlqvrlgrgqlsdrrfsirvierver 77 
                      vk el++++d f  + + r+ r + s +  + r++   +r
      KOO24781.1 180 DVKKELTQRVDSFEKTTEARFDRNEASTESNTKRIMSLEQR 220
                     699**********************9999999998876666 PP

  == domain 3  score: -2.8 bits;  conditional E-value: 0.4
  Phenyl_P_gamma  42 lsskldkfpdrlqvrl 57 
                     +s+kldk+ ++ + r+
      KOO24781.1 325 VSEKLDKYIETNDTRF 340
                     899***9988877776 PP

  == domain 4  score: 2.8 bits;  conditional E-value: 0.0072
  Phenyl_P_gamma  10 laelaegkelelsvrtlndglkkytyqrvkvelsskldkfpdrlqvrlgrgqls 63 
                     l +l  g  + l +r l + l++ t  rv++ l ++ld+   +l  +l   q  
      KOO24781.1 366 LEQLIGGCAMRLEMRELMESLRQETTSRVRM-LKERLDRTDRELLRQLEESQNN 418
                     5678889999*******************96.7889998777776666666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (649 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2253  (0.125662); expected 358.6 (0.02)
Passed bias filter:                      496  (0.0276647); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.80u 0.29s 00:00:01.09 Elapsed: 00:00:00.46
# Mc/sec: 4225.11
//
Query:       KOO24782.1  [L=594]
Description: tripeptidyl peptidase i [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.5e-19   70.7   0.0    2.4e-19   70.1   0.0    1.2  1  Pro-kuma_activ  Pro-kumamolisin, activation domain
    0.00013   21.4   0.1    0.00019   20.8   0.1    1.3  1  Peptidase_S8    Subtilase family


Domain annotation for each model (and alignments):
>> Pro-kuma_activ  Pro-kumamolisin, activation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.1   0.0   2.6e-23   2.4e-19       2     136 ..      56     195 ..      55     202 .. 0.87

  Alignments for each domain:
  == domain 1  score: 70.1 bits;  conditional E-value: 2.6e-23
  Pro-kuma_activ   2 gwtkrgraasstllpvrigL..kqnnlekledflmdvsdpkspn.ygkhltaeevaelfapseeaidaVrnwLessgiaasrhsdtkgwiafsat 93 
                      w+++g+a+ ++ ++++++L  + ++ +kle+++++vs+p + n y+++l+++++++l+a   e +++V++++ ssg ++ ++s++++++++s+ 
      KOO24782.1  56 SWVNNGAAPREEMMTLTVALtiNAEQRDKLEAAFWAVSTPTKVNtYRQFLNKDDLKNLLAVPTERVERVKEYFLSSGASDVKVSPYNDMLTVSMR 150
                     6999999999999888888822455569************87544************************************************** PP

  Pro-kuma_activ  94 vaqverllktsfeaYshkkgss.slarcde.yslPealknyvdyi 136
                     va+ver+l t+++a++h+++    l+r++  ys+P++l+  v+++
      KOO24782.1 151 VAEVERALATRISAFTHNERTGfRLLRASMgYSVPASLSGDVSMV 195
                     ****************985444356666657************99 PP

>> Peptidase_S8  Subtilase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.8   0.1   2.1e-08   0.00019     111     266 ..     332     531 ..     300     580 .. 0.69

  Alignments for each domain:
  == domain 1  score: 20.8 bits;  conditional E-value: 2.1e-08
                   HHHHHHHHHCT-S.....EEEE-EESCETTCHHCHHHHHH..HHHHHH.CCT-EEEEE--SS-T-HH.........EEE-TTCEECTTTSTTCEEEE CS
                   xxxxxxxxxxxxx.....xxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxx.........xxxxxxxxxxxxxxxxxxxxx RF
  Peptidase_S8 111 iraieeaaedkvd.....vinmslgestslpktgrsieal..ainravnkkgvlvviSaGNngktgs.........slqagspvgtpstsknvitvg 191
                   ++ +++a+e  +      + ++s+g++  +++ +   e +  a+++a    g  + +++G +g +g           ++   p+g+p      ++vg
    KOO24782.1 332 YSLLNWANELMALpeptlINSVSYGNDEAQQTGVAYMESVntAFMKAG-TMGLSILFASGDQGVCGRegcgegprkRFKPDFPGGSPY----QTSVG 423
                   4455555554444677778889***44444444444443377777777.6799**********9999999996666555555555555....57799 PP

                   EES............................................TTSSB-TT--B-TT.......-EEEE-S-CCCCCCCCCHHHTTTHH.EEE CS
                   xxx............................................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxx RF
  Peptidase_S8 192 ayt............................................tegkiapfSsrGpssdgklkpdivapGgnivstwsrqsnnsaglss.yqs 243
                   +++                                               + + +  +G        pd++a Gg     ++ +        +    
    KOO24782.1 424 GTDfygttigeetawrsggggfsdtfpipayqkdavasykkdlaaagLLPDASLYNDTGRG-----YPDVAALGGT-KDPYCINI-------GrWAG 507
                   9999999999999999999999988888888888877777777744422222333333333.....3788888887.33333333.......13678 PP

                   E-SHHHCHHHHHHHHHHHHH.HHT CS
                   xxxxxxxxxxxxxxxxxxxx.xxx RF
  Peptidase_S8 244 msGTSmAsPnaagaaAllls.alp 266
                   + GTS+A+P++++++A l s  l 
    KOO24782.1 508 VAGTSAACPVVSAIFARLNSiLLA 531
                   9****************9995554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (594 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       333  (0.0185733); expected 358.6 (0.02)
Passed bias filter:                      309  (0.0172346); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.53u 0.28s 00:00:00.81 Elapsed: 00:00:00.43
# Mc/sec: 4155.50
//
Query:       KOO24783.1  [L=241]
Description: hypothetical protein Ctob_006302 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    9.3e-06   26.3   8.0     0.0017   19.1   2.2    2.8  2  KIAA1430        KIAA1430 homologue
  ------ inclusion threshold ------
      0.041   14.0   4.4         11    6.2   0.2    3.4  3  NYD-SP28_assoc  Sperm tail C-terminal domain
      0.045   13.1   1.0      0.069   12.4   1.0    1.5  1  DUF4763         Domain of unknown function (DUF4763)
       0.27   11.9   4.5        3.3    8.4   0.6    2.8  2  SlyX            SlyX
       0.41   11.1   5.7       0.82   10.1   0.7    2.7  2  YgaB            YgaB-like protein
        4.3    6.9   7.9       0.61    9.7   2.9    1.8  2  Borrelia_orfA   Borrelia ORF-A
        4.6    7.1  14.8       0.19   11.6   6.8    2.2  2  DASH_Spc19      Spc19
        5.4    7.7   8.2        9.2    7.0   0.4    3.2  4  YabA            Initiation control protein YabA
        5.6    7.4  15.3        4.3    7.7  13.7    1.7  1  Fez1            Fez1


Domain annotation for each model (and alignments):
>> KIAA1430  KIAA1430 homologue
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.0   1.3   3.3e-05     0.065       1     101 [.      20     122 ..      20     123 .. 0.71
   2 !   19.1   2.2   8.7e-07    0.0017       3     101 ..     120     226 ..     119     227 .. 0.67

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 3.3e-05
    KIAA1430   1 Hlnklknikssidnkapkkpsh.......lskkkkklqleeerlkeiereNqiLleklseimrrkgkkksassqsqksktaskslnaenrkkelqkIee 92 
                 H+ +l+++k+ +d+    ++++           +++ ++e++r + +++   +L +k + i+   ++   +  +  +  +a +s   ++++ e ++I +
  KOO24783.1  20 HKSHLEHMKPVVDSVMDTEIAAiaraelaAASAARRAEMEAKRKAAVKEYYALLKSKTTVIDDLMDT---EAAAIARGRMAAESS--ARKETESAEIRR 113
                 8999999999977776555555444555555558888888888888888888888888888887742...222333333344444..788999****** PP

    KIAA1430  93 ENqkllkRl 101
                 EN +++kRl
  KOO24783.1 114 ENAEMKKRL 122
                 ********9 PP

  == domain 2  score: 19.1 bits;  conditional E-value: 8.7e-07
    KIAA1430   3 nklknikssidnkapkkpshlskkkkklqleeerlkeier...eNqiLleklseimrrkgk.............kksassqsqksktasksl....... 78 
                 ++lkn+k s+d++   +++   ++ +  + +++r+++ie+   eN+ + ++ls+++ + +                         +     l       
  KOO24783.1 120 KRLKNVKTSLDTDITDEIAGAAREERAAAAMARRAAKIEKikaENEAMRQRLSNTKAKTDDdvlddelagggniA----------A-----Lrdkkaad 203
                 89***********999888766666666666666666666666****************6666655554443221..........1.....12211111 PP

    KIAA1430  79 naenrkkelqkIeeENqkllkRl 101
                 ++  +   ++ +++EN ++ kR+
  KOO24783.1 204 SKDSKAAVAKVLKSENSAMGKRI 226
                 22333444888999999999998 PP

>> NYD-SP28_assoc  Sperm tail C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.9   0.0     0.028        56      24      41 ..      65      82 ..      61      88 .. 0.87
   2 ?    6.2   0.2    0.0055        11      38      58 ..     104     124 ..     100     125 .. 0.86
   3 ?    3.7   0.1     0.034        67      40      57 ..     155     172 ..     148     174 .. 0.86

  Alignments for each domain:
  == domain 1  score: 3.9 bits;  conditional E-value: 0.028
  NYD-SP28_assoc 24 aLekYhevLteRakliee 41
                    a+++Y+++L+ + ++i++
      KOO24783.1 65 AVKEYYALLKSKTTVIDD 82
                    789*********999976 PP

  == domain 2  score: 6.2 bits;  conditional E-value: 0.0055
  NYD-SP28_assoc  38 lieetesLekqNeeLrnlLkq 58 
                       +e  +++++N+e++++Lk+
      KOO24783.1 104 KETESAEIRRENAEMKKRLKN 124
                     5678899************96 PP

  == domain 3  score: 3.7 bits;  conditional E-value: 0.034
  NYD-SP28_assoc  40 eetesLekqNeeLrnlLk 57 
                     +++e+++++Ne +r++L 
      KOO24783.1 155 AKIEKIKAENEAMRQRLS 172
                     6789***********996 PP

>> DUF4763  Domain of unknown function (DUF4763)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   1.0   3.5e-05     0.069      44     119 ..     101     174 ..      24     184 .. 0.70

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 3.5e-05
     DUF4763  44 eeeeeldLdeiydelekiKqrvlelrskLalnvpecPeidecvdedlelelltseqpeileLqrnnhkLrqqlael 119
                  + +e++  ei  e  ++K+r++ ++ +L +++ +    +  + e+  + +      +i +++ +n  +rq+l++ 
  KOO24783.1 101 SARKETESAEIRRENAEMKKRLKNVKTSLDTDITDEI--AGAAREERAAAAMARRAAKIEKIKAENEAMRQRLSNT 174
                 5556666667777777777777777777777777655..3333333333333346777777777777777777764 PP

>> SlyX  SlyX
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.4   0.3      0.03        60      28      57 ..     103     132 ..      98     145 .. 0.81
   2 ?    8.4   0.6    0.0017       3.3      25      57 ..     149     181 ..     144     187 .. 0.84

  Alignments for each domain:
  == domain 1  score: 4.4 bits;  conditional E-value: 0.03
                 HHHHHHHHHHHHHHHHHHT-XXXXXXXXXX CS
        SlyX  28 eqqqqidrlqrqlrllaerlkeleessgas 57 
                 + + + ++++r+ +++++rlk++++s  ++
  KOO24783.1 103 RKETESAEIRRENAEMKKRLKNVKTSLDTD 132
                 667788899999********9999987654 PP

  == domain 2  score: 8.4 bits;  conditional E-value: 0.0017
                 HHHHHHHHHHHHHHHHHHHHHT-XXXXXXXXXX CS
        SlyX  25 vvaeqqqqidrlqrqlrllaerlkeleessgas 57 
                 ++a+ + +i++++++ +++++rl++ ++++ ++
  KOO24783.1 149 AMARRAAKIEKIKAENEAMRQRLSNTKAKTDDD 181
                 789999*****************9998887654 PP

>> YgaB  YgaB-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.7   0.00041      0.82      36      68 ..     102     134 ..      72     144 .. 0.89
   2 ?    2.7   0.5     0.087   1.7e+02      36      58 ..     151     173 ..     141     178 .. 0.85

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.00041
        YgaB  36 lekeaklesiqeeikrkkkeLkeiqkvFekQte 68 
                  +ke++  +i+ e +++kk+Lk++++  ++ + 
  KOO24783.1 102 ARKETESAEIRRENAEMKKRLKNVKTSLDTDIT 134
                 5799********************998877654 PP

  == domain 2  score: 2.7 bits;  conditional E-value: 0.087
        YgaB  36 lekeaklesiqeeikrkkkeLke 58 
                  ++ ak+e+i++e + ++++L +
  KOO24783.1 151 ARRAAKIEKIKAENEAMRQRLSN 173
                 56789**************9986 PP

>> Borrelia_orfA  Borrelia ORF-A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   2.9   0.00031      0.61     105     223 ..      55     179 ..      42     187 .. 0.83
   2 ?   -0.5   0.2      0.38   7.6e+02     100     127 ..     195     222 ..     193     237 .. 0.69

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 0.00031
  Borrelia_orfA 105 Kedliekikkrvnnyikkelnknnsvkklecinniaknksneeekkksiekeqlkkyikkkkkkskkslsilnlnikkdikiklikiikkeeiaie 200
                    ++++  k k +v++y++  ++k   +++l +++  a   + +   ++s  ke  +  i + + + kk l + + +++ di+ ++   +++e  a  
     KOO24783.1  55 RAEMEAKRKAAVKEYYALLKSKTTVIDDLMDTEAAAIA-RGRMAAESSARKETESAEIRRENAEMKKRLKNVKTSLDTDITDEIAGAAREERAAAA 149
                    56677788999999999999999999999988886544.456667777888888889999999999999999999999999999988888777666 PP

  Borrelia_orfA 201 .......ikklknkqktlkniLrnlkkaLe 223
                           i+k+k +++ +++ L+n+k + +
     KOO24783.1 150 marraakIEKIKAENEAMRQRLSNTKAKTD 179
                    8899**9******************98766 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 0.38
  Borrelia_orfA 100 yfkekKedliekikkrvnnyikkelnkn 127
                     +++kK+   ++ k +v +++k e ++ 
     KOO24783.1 195 ALRDKKAADSKDSKAAVAKVLKSENSAM 222
                    5889997768899999998886554443 PP

>> DASH_Spc19  Spc19
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.8   2.8       0.2   3.9e+02      93     146 ..      92     125 ..      19     130 .. 0.48
   2 ?   11.6   6.8   9.7e-05      0.19      50     152 ..     122     224 ..     119     228 .. 0.73

  Alignments for each domain:
  == domain 1  score: 0.8 bits;  conditional E-value: 0.2
                 HHHHHHH......HHHHT-XXXXXXXXXXXX....XXXXXXXXXXXXXXXXXXX CS
  DASH_Spc19  93 qegrlsnaesskkeeeeseeskeeeeeeenkeeekskkkltkeelerlkkLkqk 146
                  +gr+  ++s +ke+e++e                      +e++e  k+Lk+ 
  KOO24783.1  92 ARGRMAAESSARKETESAE--------------------IRRENAEMKKRLKNV 125
                 2222222211111111111....................333333333334433 PP

  == domain 2  score: 11.6 bits;  conditional E-value: 9.7e-05
                 HHHHHHHHHHHTTTHHH..HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH......HHHHT-XXXXXXXXXXXX....XXXXXXXXXXXXXXXXXXX CS
  DASH_Spc19  50 leaakaslaeeiePqie..ellekaekeleklerreetLkaklelqegrlsnaesskkeeeeseeskeeeeeeenkeeekskkkltkeelerlkkLkqk 146
                 l++ k+sl  +i+ +i+     e+a + +++ + + e++ka+ e  ++rlsn++++++++   +e +   +   +  ++k++++++ ++++ +k Lk++
  KOO24783.1 122 LKNVKTSLDTDITDEIAgaAREERAAAAMARRAAKIEKIKAENEAMRQRLSNTKAKTDDDVLDDELAGGGN--IAALRDKKAADSKDSKAAVAKVLKSE 218
                 78899***********72256789****************************7555555554444444333..33333444445888888999999888 PP

                 XXXXXX CS
  DASH_Spc19 147 KerLky 152
                   ++ +
  KOO24783.1 219 NSAMGK 224
                 777665 PP

>> YabA  Initiation control protein YabA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.0       1.7   3.4e+03      23      38 ..      23      38 ..       8      81 .. 0.49
   2 ?    4.2   0.5     0.035        69      34      58 ..     104     128 ..      77     152 .. 0.69
   3 ?    7.0   0.4    0.0046       9.2      35      61 ..     154     180 ..     142     216 .. 0.76
   4 ?   -1.5   0.0         2     4e+03      39      56 ..     213     230 ..     192     237 .. 0.66

  Alignments for each domain:
  == domain 1  score: -1.3 bits;  conditional E-value: 1.7
                HHHHHHHHHHHHHHHH CS
        YabA 23 eleelkeelaelleen 38
                +le++k  + ++++ +
  KOO24783.1 23 HLEHMKPVVDSVMDTE 38
                4444444444444332 PP

  == domain 2  score: 4.2 bits;  conditional E-value: 0.035
                 HHHHHHHHHHHHHHHHHHHXXXXXX CS
        YabA  34 lleenaeLeleneklrerleeeekk 58 
                    e ae++ en ++++rl++ +++
  KOO24783.1 104 KETESAEIRRENAEMKKRLKNVKTS 128
                 4557778888888888888443332 PP

  == domain 3  score: 7.0 bits;  conditional E-value: 0.0046
                 HHHHHHHHHHHHHHHHHHXXXXXXXXX CS
        YabA  35 leenaeLeleneklrerleeeekkeke 61 
                   + +++++ene +r+rl+++++k+++
  KOO24783.1 154 AAKIEKIKAENEAMRQRLSNTKAKTDD 180
                 5566899***********655555443 PP

  == domain 4  score: -1.5 bits;  conditional E-value: 2
                 HHHHHHHHHHHHHHXXXX CS
        YabA  39 aeLeleneklrerleeee 56 
                 + L+ en+ + +r+++++
  KOO24783.1 213 KVLKSENSAMGKRIANTH 230
                 456677777777764444 PP

>> Fez1  Fez1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.7  13.7    0.0022       4.3      28     153 ..      53     180 ..      38     187 .. 0.78

  Alignments for each domain:
  == domain 1  score: 7.7 bits;  conditional E-value: 0.0022
        Fez1  28 qklsei.valkaqlrelrakleekeeeikeleesleektlelevcenelqrkkseaellrekvekleeelkelreelselsleeeeaalesde.akaqr 124
                 ++  e+  + ka ++e  a l++k + i++l ++     +      +  +rk++e+  +r +  ++++ lk+++++l +  ++e   a++ ++ a a  
  KOO24783.1  53 ARRAEMeAKRKAAVKEYYALLKSKTTVIDDLMDTEAAAIARGRMAAESSARKETESAEIRRENAEMKKRLKNVKTSLDTDITDEIAGAAREERaAAAMA 151
                 4444551456899******************999998888888888888899999999999999***********999977666555533333033334 PP

        Fez1 125 qeaeeleelkreverlraeLkeerqkkee 153
                 ++a ++e+ k+e e +r++L++ + k+++
  KOO24783.1 152 RRAAKIEKIKAENEAMRQRLSNTKAKTDD 180
                 44679999999999999999999988765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (241 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2057  (0.11473); expected 358.6 (0.02)
Passed bias filter:                      478  (0.0266607); expected 358.6 (0.02)
Passed Vit filter:                        60  (0.00334653); expected 17.9 (0.001)
Passed Fwd filter:                        23  (0.00128284); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.64u 0.26s 00:00:00.90 Elapsed: 00:00:00.42
# Mc/sec: 1707.71
//
Query:       KOO24784.1  [L=106]
Description: hypothetical protein Ctob_006301 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (106 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       343  (0.019131); expected 358.6 (0.02)
Passed bias filter:                      208  (0.0116013); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.25s 00:00:00.61 Elapsed: 00:00:00.41
# Mc/sec: 774.36
//
Query:       KOO24785.1  [L=156]
Description: 50s ribosomal protein l17 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.8e-30  104.6   0.0    5.1e-30  104.2   0.0    1.2  1  Ribosomal_L17  Ribosomal protein L17


Domain annotation for each model (and alignments):
>> Ribosomal_L17  Ribosomal protein L17
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  104.2   0.0   2.8e-34   5.1e-30       1      93 [.      60     155 ..      60     156 .] 0.97

  Alignments for each domain:
  == domain 1  score: 104.2 bits;  conditional E-value: 2.8e-34
                    HHHHHHHHHHHHSEEEEEHHHHHHHHHHHHHHHHHHHH-SHHHHHHHHHHS-...HHHHHHHTHHHHTSS--S--EEEEEEEE-TTTH-EEEEEEE CS
  Ribosomal_L17   1 LlrnlvtsLleherIetTlakAkelrklaeklitlakkgelaarrkalayla...lvkkLfeelapryadrngGYtRilklgprrgDaaemailel 93 
                    Llr l+t+L++h+rI++Tla  k++rk+a++++tlak+g+l+arr+al y++   lv+ Lfe++ +rya+r+gGYtR+l+ g rrgD++em ++el
     KOO24785.1  60 LLRGLTTELIRHGRIRSTLAHVKAVRKTADHMVTLAKDGSLHARRQALGYIYdkqLVHALFEQVPERYANRDGGYTRVLRDGFRRGDNSEMGVIEL 155
                    89*************************************************44559***************************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (156 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       429  (0.0239277); expected 358.6 (0.02)
Passed bias filter:                      371  (0.0206927); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.24s 00:00:00.62 Elapsed: 00:00:00.38
# Mc/sec: 1227.56
//
Query:       KOO24786.1  [L=552]
Description: hypothetical protein Ctob_008514 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (552 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       823  (0.0459033); expected 358.6 (0.02)
Passed bias filter:                      389  (0.0216967); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.53u 0.24s 00:00:00.77 Elapsed: 00:00:00.39
# Mc/sec: 4225.32
//
Query:       KOO24787.1  [L=140]
Description: hypothetical protein Ctob_008515, partial [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      5e-07   29.8   0.0    7.7e-07   29.2   0.0    1.3  1  DnaJ      DnaJ domain


Domain annotation for each model (and alignments):
>> DnaJ  DnaJ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.2   0.0   4.3e-11   7.7e-07       2      34 ..     104     138 ..     103     140 .] 0.88

  Alignments for each domain:
  == domain 1  score: 29.2 bits;  conditional E-value: 4.3e-11
                 HHHHHTSSTTG..-HHHHHHHHHHHHHHHSTTTSC CS
        DnaJ   2 yYeiLgvskda..sedeIkkaYrklalkyHPDknp 34 
                  Y++Lgv+++   + d++k ++rk++lk+HPDkn 
  KOO24787.1 104 AYDFLGVKQEDrgNLDKVKMRFRKMSLKWHPDKNM 138
                 6********96347899****************94 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (140 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       234  (0.0130515); expected 358.6 (0.02)
Passed bias filter:                      198  (0.0110436); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.35u 0.21s 00:00:00.55 Elapsed: 00:00:00.36
# Mc/sec: 1158.68
//
Query:       KOO24788.1  [L=127]
Description: hypothetical protein Ctob_008510 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
     0.0082   15.5   2.3       0.01   15.2   2.3    1.2  1  GAS         Growth-arrest specific micro-tubule binding
  ------ inclusion threshold ------
      0.039   14.6   2.3      0.045   14.4   2.3    1.1  1  Ino80_Iec3  IEC3 subunit of the Ino80 complex, chromatin re-m
      0.095   13.1   6.2       0.11   12.9   6.2    1.1  1  Fez1        Fez1
        9.6    4.4  10.5         11    4.3  10.5    1.1  1  MAD         Mitotic checkpoint protein


Domain annotation for each model (and alignments):
>> GAS  Growth-arrest specific micro-tubule binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   2.3   2.3e-06      0.01      22     108 ..      17     103 ..       6     111 .. 0.89

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 2.3e-06
         GAS  22 rnNLelIkslKeeieelkkkeernekelseisqenkrlkepLkkaeeeveeLrkqlknyekdkqslknlkarlkelekelkdlkweh 108
                 ++ L+  + l+ +++   +++e++e  l+ + +e ++ +  L +a+ e ++Lr +++  e    + + + a   e e +++++  e+
  KOO24788.1  17 AEALAAADALRADLAATTARAEAAEVSLATAREEASNTRASLDAATSEAAKLRDAAASAEARATKSEVAAASAAEREAQMRRVISEQ 103
                 567888899*************************************************99999999999999999999998876665 PP

>> Ino80_Iec3  IEC3 subunit of the Ino80 complex, chromatin re-modelling
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.4   2.3   9.9e-06     0.045      58     146 ..      22     122 ..      14     127 .] 0.76

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 9.9e-06
  Ino80_Iec3  58 ipsslRydLslps.......vpsllspeeaaipsleadakgae.aklkeakee....laageitaedlreleeslkkskafapkkslasLlskvphtsl 144
                     lR dL++++       v+ ++  eea+++ ++ da++ e akl++a ++    +++ e++a + +e+e+++++  + + +k+ asL +   h   
  KOO24788.1  22 AADALRADLAATTaraeaaeVSLATAREEASNTRASLDAATSEaAKLRDAAASaearATKSEVAAASAAEREAQMRRVISEQVAKQVASLGKIAGHLAH 120
                 56679999999999999999888889999999998888888877777776555000045566777788999******9999999****99988888665 PP

  Ino80_Iec3 145 ea 146
                 +a
  KOO24788.1 121 AA 122
                 54 PP

>> Fez1  Fez1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   6.2   2.5e-05      0.11      44     135 ..      13     109 ..       4     122 .. 0.72

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 2.5e-05
        Fez1  44 rakleekeeeikeleesleektlelevcenelqrkkseaellrekvekleeelkelreelselsleeeeaalesdeakaqrqe.....aeeleelkr 135
                  a+l e  ++++ l++ l   t+  e  e  l+ +++ea+++r  ++++ +e ++lr+++++++++++++++++ +a +++++     +e++++  +
  KOO24788.1  13 AAALAEALAAADALRADLAATTARAEAAEVSLATAREEASNTRASLDAATSEAAKLRDAAASAEARATKSEVAAASAAEREAQmrrviSEQVAKQVA 109
                 4567788888999999999***************************************999888777776654444444433322222333333333 PP

>> MAD  Mitotic checkpoint protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.3  10.5    0.0024        11      16     115 ..       3     102 ..       1     113 [. 0.69

  Alignments for each domain:
  == domain 1  score: 4.3 bits;  conditional E-value: 0.0024
         MAD  16 nelkqkelehkrarielekkasalkrqleeesdrnqelqkrikllekreeekeealr.eqiElarlkkknlealnkkekekesklaearevisalknel 113
                  + ++ e  h  a++e+ ++a al+ +l+ + +r ++ +  +   +++ ++  ++l  ++ E a+ ++   ++++ ++   e   a+a e + +++  +
  KOO24788.1   3 TDQAKAEERHAAALAEALAAADALRADLAATTARAEAAEVSLATAREEASNTRASLDaATSEAAK-LRDAAASAEARATKSEVAAASAAEREAQMRRVI 100
                 57788899999999999999999999999999999999999999999885555555505556665.444444555555555555555655555555555 PP

         MAD 114 ae 115
                 +e
  KOO24788.1 101 SE 102
                 54 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (127 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2203  (0.122874); expected 358.6 (0.02)
Passed bias filter:                      676  (0.0377043); expected 358.6 (0.02)
Passed Vit filter:                        86  (0.0047967); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.44u 0.26s 00:00:00.70 Elapsed: 00:00:00.38
# Mc/sec: 993.32
//
Query:       KOO24789.1  [L=113]
Description: hypothetical protein Ctob_008511 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (113 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       292  (0.0162865); expected 358.6 (0.02)
Passed bias filter:                      241  (0.0134419); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.23s 00:00:00.59 Elapsed: 00:00:00.38
# Mc/sec: 881.96
//
Query:       KOO24790.1  [L=552]
Description: aldo-keto reductase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.2e-42  146.2   0.0    2.5e-42  145.1   0.0    1.5  1  Aldo_ket_red     Aldo/keto reductase family
  ------ inclusion threshold ------
      0.049   13.9   2.1       0.12   12.7   2.1    1.7  1  Val_tRNA-synt_C  Valyl tRNA synthetase tRNA binding arm
      0.099   11.8   0.0       0.14   11.2   0.0    1.1  1  Tmemb_cc2        Predicted transmembrane and coiled-coil 2 pr
        1.5    9.1   4.7        2.9    8.2   4.7    1.4  1  DUF5517          Family of unknown function (DUF5517)
        2.9    8.0  11.1       0.91    9.6   7.1    2.3  2  Strep_SA_rep     Streptococcal surface antigen repeat


Domain annotation for each model (and alignments):
>> Aldo_ket_red  Aldo/keto reductase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  145.1   0.0   6.9e-46   2.5e-42      17     292 ..     241     527 ..     233     529 .. 0.92

  Alignments for each domain:
  == domain 1  score: 145.1 bits;  conditional E-value: 6.9e-46
                   HHHHHHHHHHHHHTT--EEE--TT-TTTHHHHHHHHHHHH....-TTTGGG-EEEEEE--SSSTTSSSS-HHHHHHHHHHHHHHHT-S-EEEEEE-S CS
  Aldo_ket_red  17 keealellrraleaGinffDtAevYgkgqseellGealkk....srkkreeviiatKvdlrdaeiksglskeniresleeslkrLgtdyvDllllHr 109
                     +a +++ +al +G++++DtA +Y   + e ++G+al++      ++r ev+i+tK       ++  +  e    +l++sl+rL++dyvD + +H+
    KOO24790.1 241 GTQACKAVAAALRNGYRLVDTAYIYAGEKTEAEVGKALASafaaGTVSRSEVFITTKH------WRKFHGYEPALGCLQRSLQRLQLDYVDCWMMHW 331
                   578999*******************99999999*******99999*************......9999999************************** PP

                   --TTS-..............................HHHHHHHHHHHHHTTSEEEEEEES--HHHHHHH.HHTTT--EEEEE-B-BTT-HHHHTTHH CS
  Aldo_ket_red 110 pdpslp.............................sieevldaleelvkeGkiraiGvSnfsveqleka.kkkkkvkivavqveynllreleeegll 176
                   p p++                               ++e+++a+ee  + Gk+r+i+vSnf+v++le + ++    +++++qve+++l    +++l+
    KOO24790.1 332 PGPAWRtmnrrndeltehgrwhyamdghaeteivaLRAETWRAMEEALRTGKARSIAVSNFTVAHLETLkQTATIWPPAVNQVEMHPL--YPQAELR 426
                   ***********************************9*********************************77777889***********..******* PP

                   HHHHHTT-EEEEBSTTGG..GTTGTTTSS---SSSCCC-------TS-HHHHHHHHHHHHHHHHTT--HHHHHHHHHTTSTT-SEEEE--SSHHHHH CS
  Aldo_ket_red 177 elckkkgvpliaysplgg..Glltgkyqseedkedkeprkdlkrdertsknldaaeelselakehgvslaqlalryalsqpavgivipgasnieqle 271
                    +c+ +g+ l ay  lgg  G+  ++    ++                  +  a+ ++++  ++   ++aq+ lr+al  +++  v p++ + +++ 
    KOO24790.1 427 AYCEREGIVLQAYASLGGqdGSKAKWASLGGHL----------------LEAPAVLDACRAHASVHATPAQVLLRWAL--QKGAAVCPKTASEARMA 505
                   *****************8545554444444444................345777888888888888***********..9**************** PP

                   HHHGGG.G----HHHHHHHHHH CS
  Aldo_ket_red 272 dnldal.elklseeevaeldel 292
                   +n + + +++ls+ e+ ++d+l
    KOO24790.1 506 ENGACVgHFTLSDAEMGAIDAL 527
                   **9999788***********87 PP

>> Val_tRNA-synt_C  Valyl tRNA synthetase tRNA binding arm
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   2.1   3.2e-05      0.12       1      29 [.      38      66 ..      38      68 .. 0.96

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 3.2e-05
  Val_tRNA-synt_C  1 DvekeraRLeKeLaklekeiervqkKLan 29
                     D+e+e +RL+++Lak+++ ++  +kK+a 
       KOO24790.1 38 DLEAENTRLKRKLAKYKAKMAAYEKKIAA 66
                     9**************************96 PP

>> Tmemb_cc2  Predicted transmembrane and coiled-coil 2 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0     4e-05      0.14      63     151 ..      44     142 ..      40     173 .. 0.77

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 4e-05
   Tmemb_cc2  63 aqLqkKLeqyekrlkelelkeqksskssrqskevlrdvgqglkdvggnirdgisglsgae..............kktvvskprefahliknkfGSADni 147
                 ++L++KL +y+ ++  +e k   +++  ++ k++ +d++  ++++   ird + ++  ae              +++v  + +++a+  k ++  A n 
  KOO24790.1  44 TRLKRKLAKYKAKMAAYEKK--IAAELVDENKSIYKDLDYDISEYFVRIRDYVCASVPAEvcapsnctitlkmfPQFVNGNTNSVAQKTKCTI--ARNN 138
                 589***************53..3444448999*******************977777666789999999999988888888888887777666..6665 PP

   Tmemb_cc2 148 nslk 151
                 n + 
  KOO24790.1 139 NAMI 142
                 5555 PP

>> DUF5517  Family of unknown function (DUF5517)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.2   4.7   0.00081       2.9      35      88 ..      24      80 ..      11      90 .. 0.77

  Alignments for each domain:
  == domain 1  score: 8.2 bits;  conditional E-value: 0.00081
                EEEEEETTTEEEEEEEESTT--HHHHHHHHHHH...HHHHTT--STTHHHHHHHHHH CS
     DUF5517 35 hikieldedeklekeiyadniklenelrqlkrl...yevyqsveiddaqkaiqkeal 88
                 +  + dede++e ++ a+n +l+ +l + k     ye   + e+ d +k+i k+  
  KOO24790.1 24 EVDEDEDEDEQFEGDLEAENTRLKRKLAKYKAKmaaYEKKIAAELVDENKSIYKDLD 80
                34445678899****************9999751226666789999*****999865 PP

>> Strep_SA_rep  Streptococcal surface antigen repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   7.1   0.00025      0.91       6      23 ..      49      66 ..      48      67 .. 0.89
   2 ?   -2.0   0.1       1.1   3.9e+03      11      17 ..     422     428 ..     422     430 .. 0.87

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 0.00025
                  HHHHHHHHHHHHHHHHHH CS
  Strep_SA_rep  6 KLakYeaeLAaVQKanad 23
                  KLakY a +Aa+ K++a+
    KOO24790.1 49 KLAKYKAKMAAYEKKIAA 66
                  899999999999999998 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 1.1
                   HHHHHHH CS
  Strep_SA_rep  11 eaeLAaV 17 
                   +aeL a+
    KOO24790.1 422 QAELRAY 428
                   8999998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (552 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       851  (0.047465); expected 358.6 (0.02)
Passed bias filter:                      533  (0.0297284); expected 358.6 (0.02)
Passed Vit filter:                        64  (0.00356964); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.58u 0.26s 00:00:00.84 Elapsed: 00:00:00.40
# Mc/sec: 4120.45
//
Query:       KOO24791.1  [L=162]
Description: hypothetical protein Ctob_008513 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.1e-19   70.9   1.3    1.2e-19   70.7   1.3    1.0  1  TPT       Triose-phosphate Transporter family
     0.0018   18.4   8.4     0.0024   18.0   8.4    1.2  1  EamA      EamA-like transporter family


Domain annotation for each model (and alignments):
>> TPT  Triose-phosphate Transporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.7   1.3   1.4e-23   1.2e-19     150     289 ..       4     142 ..       1     143 [. 0.88

  Alignments for each domain:
  == domain 1  score: 70.7 bits;  conditional E-value: 1.4e-23
         TPT 150 AlisnltfslrnifsKkllkklkd.....ldalnlfaiitilslllllPvallvegvlktpsllkstkvslkevllllllsgvlfhlynqvaymvLerv 243
                 Al+snl+fs r ++ K l +++        +   lf+ ++ ++l +l+P al+++      + l+s+ +   ++ lllll+g+ + lyn v+++vL++v
  KOO24791.1   4 ALASNLAFSGRAVLTKLLKRDH-PgaqvtKSDACLFFHVSRCGLCILVPCALVLDA----GAWLASG-ADPVRLGLLLLLNGMAHALYNGVSFAVLAKV 96 
                 99************98776662.2355445567799*******************9....5555665.5678999************************ PP

         TPT 244 spvthsvantvKrvvvIvlsvlvfknpvsllnaiGtavaivGvflY 289
                 s  th+v n v+rv+vI+++  vf +pvs  n  G +++++Gv+ +
  KOO24791.1  97 SIATHAVLNIVRRVLVIAVAAAVFATPVSAFNGSGFVLSVLGVLAF 142
                 *******************************************865 PP

>> EamA  EamA-like transporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.0   8.4   2.7e-07    0.0024       6     133 ..       3     140 ..       1     143 [. 0.82

  Alignments for each domain:
  == domain 1  score: 18.0 bits;  conditional E-value: 2.7e-07
        EamA   6 lallaalfwaiyfvlskillrkv.........spltltfvrfliagillliiallkegkl.aklslkdwllllllgllgtvlafllffyalkktsasna 94 
                 lal++ l ++  +vl+k l r++           l++ + r+ ++ ++ +++ l  + +l +  ++  + lllll  ++ +l++++ f  l k+s ++ 
  KOO24791.1   3 LALASNLAFSGRAVLTKLLKRDHpgaqvtksdACLFFHVSRCGLCILVPCALVLDAGAWLaSGADPVRLGLLLLLNGMAHALYNGVSFAVLAKVSIATH 101
                 67777778888888888776666444444432333555577777777777777777777799999999******************************* PP

        EamA  95 slitslePvftlilsvlllgekltlkqllgivlillGvl 133
                 ++++ +  v+++  +++++  +++ +   g+vl++lGvl
  KOO24791.1 102 AVLNIVRRVLVIAVAAAVFATPVSAFNGSGFVLSVLGVL 140
                 *************************************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (162 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       739  (0.0412181); expected 358.6 (0.02)
Passed bias filter:                      378  (0.0210832); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.41u 0.23s 00:00:00.64 Elapsed: 00:00:00.40
# Mc/sec: 1222.63
//
Query:       KOO24792.1  [L=104]
Description: hypothetical protein Ctob_008507, partial [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (104 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       280  (0.0156172); expected 358.6 (0.02)
Passed bias filter:                      216  (0.0120475); expected 358.6 (0.02)
Passed Vit filter:                        11  (0.000613531); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.25s 00:00:00.61 Elapsed: 00:00:00.41
# Mc/sec: 769.87
//
Query:       KOO24793.1  [L=368]
Description: cof-like hydrolase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
      1e-19   71.3   0.1    1.4e-19   70.9   0.1    1.2  1  Hydrolase_3  haloacid dehalogenase-like hydrolase
    0.00011   21.7   0.0    0.00031   20.2   0.0    1.8  1  Tic22        Tic22-like family
     0.0013   19.0   0.0     0.0029   17.9   0.0    1.6  1  Hydrolase    haloacid dehalogenase-like hydrolase
  ------ inclusion threshold ------
      0.087   13.0   2.2       0.14   12.3   1.5    1.7  2  DUF4232      Protein of unknown function (DUF4232)
       0.16   11.5   0.0       0.22   11.0   0.0    1.2  1  S6PP         Sucrose-6F-phosphate phosphohydrolase


Domain annotation for each model (and alignments):
>> Hydrolase_3  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.9   0.1   3.8e-23   1.4e-19     197     255 .]       3      61 ..       1      61 [. 0.96

  Alignments for each domain:
  == domain 1  score: 70.9 bits;  conditional E-value: 3.8e-23
                  HHCT--GGGEEEEESSGGGHHHHHHSSEEEEETTS-HHHHHHSSEEE--GGGTHHHHHH CS
  Hydrolase_3 197 kelnisleeviafGDgeNDieMLeaaglgvAmgnaseevkkaAdyvtksnnedGVakal 255
                    l++ ++ v+a+GDgeND+eML  +g+ vAmgna  +vkk+A++v+ sn+ dGVa+a+
   KOO24793.1   3 RSLGVRPSSVMAVGDGENDLEMLRLVGYPVAMGNAVASVKKVARHVVSSNAADGVAEAI 61 
                  67999****************************************************98 PP

>> Tic22  Tic22-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.2   0.0   8.6e-08   0.00031      33     193 ..     128     298 ..     100     348 .. 0.65

  Alignments for each domain:
  == domain 1  score: 20.2 bits;  conditional E-value: 8.6e-08
       Tic22  33 pfasisqeaegaaaataLssdevaktLaGvpvytvsnsnnefvlvsdpdgeksigllcfrqedAeafLaqvkkrkrelrsqakvvpvaLdkvvkl.... 127
                   a  +  a+ +a ++ Ls ++++ +La vpv +++n +  + l +   ++  +g l +     ea+L+ ++  + +   +a+   v+L +v+      
  KOO24793.1 128 AMAADGGVAAPSAGGVKLSRQQIEAKLAKVPVVALVNEESSPFLTA---NGGRVGYLWLDPS--EALLE-LRVLQ-RTSPEARFKVVTLPEVYFPlvrk 219
                 22222333333344559*************************9964...4556788866555..55554.43333.23446667778999998644664 PP

       Tic22 128 .kve.giaFrflPdpvqv...knAlelkasev.......kdgfdGvPvFqsrlLvvkken.kryiPvffrkediekels 193
                  + + g   r+ P   qv   + Al+ + +e+       ++  + vP+F s+ +  + +    + P+f+ ked++    
  KOO24793.1 220 eQPDlGGELRLRPSKRQVvlaNRALQYNMKEGvllpttlDETKGQVPLFYSERVAFEDKGgGALFPFFLVKEDLDAAYR 298
                 433345679********9333346666666657787775555566*******9999877526899*********97654 PP

>> Hydrolase  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.9   0.0   8.2e-07    0.0029     183     209 ..       2      28 ..       1      29 [. 0.91

  Alignments for each domain:
  == domain 1  score: 17.9 bits;  conditional E-value: 8.2e-07
                 HHHHTSTGGGEEEEESSHHHHHHHHHT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   Hydrolase 183 ireLqgkpeevamVGDgvnDaaalaaA 209
                 +r L+++p+ v++VGDg nD+++l+ +
  KOO24793.1   2 LRSLGVRPSSVMAVGDGENDLEMLRLV 28 
                 6889********************866 PP

>> DUF4232  Protein of unknown function (DUF4232)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   1.5   3.8e-05      0.14      50     124 ..      40     122 ..      23     126 .. 0.67
   2 ?   -3.4   0.0       2.8     1e+04      35      50 ..     154     169 ..     151     175 .. 0.76

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 3.8e-05
     DUF4232  50 qvgaaaeregpaavp.........vtLapGesAyaglrwtnaggdgdgectaaglrvt.pp.dgtksvtvpdlgatgtdvdvgklt 124
                 +v+++a++  ++ ++         v+L   ++A+  ++++n g+d dg++++ + r   pp ++t+++ ++   a+++++++++++
  KOO24793.1  40 SVKKVARHVVSSNAAdgvaeairtVALPNRARASTRMQLRNDGEDEDGPPVSSTRRLDgPPvSSTRRLVLA---AGAAAATSTRAG 122
                 444444433332222344566668****************************7777777999******999...333333344444 PP

  == domain 2  score: -3.4 bits;  conditional E-value: 2.8
     DUF4232  35 ldGyPgVslldadgqq 50 
                 l+  P V+l++++ ++
  KOO24793.1 154 LAKVPVVALVNEESSP 169
                 7788999999887666 PP

>> S6PP  Sucrose-6F-phosphate phosphohydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   6.1e-05      0.22     176     243 ..       4      62 ..       1      66 [. 0.78

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 6.1e-05
                 HHT--GGGEEEEE-SGGGHHHHTSSSEEEE-TT--HHHHHHHHHH--TTE..EE-SS-THHHHHHHHH CS
        S6PP 176 kleleleqilvcGdsgnDeellignvlgVvVgnaqeellqwllenakeneriylaeercaaGilegla 243
                  l++ +++++ +Gd +nD e+l+   + V +gna +      ++ a++       +++ a+G+ e+++
  KOO24793.1   4 SLGVRPSSVMAVGDGENDLEMLRLVGYPVAMGNAVAS----VKKVARHVV-----SSNAADGVAEAIR 62 
                 6788999**************************9998....333333333.....5567778888776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (368 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       325  (0.0181271); expected 358.6 (0.02)
Passed bias filter:                      251  (0.0139997); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.46u 0.27s 00:00:00.73 Elapsed: 00:00:00.42
# Mc/sec: 2601.83
//
Query:       KOO24794.1  [L=736]
Description: hypothetical protein Ctob_008508 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    8.7e-10   38.1   0.8    1.5e-09   37.4   0.8    1.4  1  SAP       SAP domain
    1.4e-09   38.0   0.0    2.3e-09   37.3   0.0    1.2  1  SURF2     Surfeit locus protein 2 (SURF2)


Domain annotation for each model (and alignments):
>> SAP  SAP domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.4   0.8   1.6e-13   1.5e-09       4      32 ..     632     660 ..     629     662 .. 0.91

  Alignments for each domain:
  == domain 1  score: 37.4 bits;  conditional E-value: 1.6e-13
                 --HHHHHHHHHHTT--TTS-HHHHHHHHH CS
         SAP   4 ltVaeLKeeLkkrGLptsGkKaeLieRLk 32 
                 + VaeLKe++++rGL+t GkK +L+eRL+
  KOO24794.1 632 MLVAELKELCEQRGLSTVGKKSVLVERLL 660
                 669************************97 PP

>> SURF2  Surfeit locus protein 2 (SURF2)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.3   0.0   2.6e-13   2.3e-09       3      53 ..     315     365 ..     313     369 .. 0.91

  Alignments for each domain:
  == domain 1  score: 37.3 bits;  conditional E-value: 2.6e-13
       SURF2   3 dvrafLrehpslqllengkvkClltGhellcrlaelqsYtdgkkyrrlsal 53 
                 +  afL    +++ l+ngkv+C+ tGhe++ rl el  + +gkky++l+a 
  KOO24794.1 315 EAHAFLEMVGDYEWLPNGKVRCTTTGHEMWPRLIELICHWNGKKYAKLTAE 365
                 5678999999**************************************875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (736 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       818  (0.0456244); expected 358.6 (0.02)
Passed bias filter:                      300  (0.0167327); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.65u 0.32s 00:00:00.97 Elapsed: 00:00:00.45
# Mc/sec: 4919.26
//
Query:       KOO24795.1  [L=294]
Description: peptidase s8 s53 subtilisin kexin sedolisin [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.055   13.6   0.5       0.24   11.5   0.1    2.1  2  Sigma70_r3  Sigma-70 region 3
       0.15   12.4   0.2          2    8.8   0.1    2.2  2  ArsD        Arsenical resistance operon trans-acting represso
          2    8.3   4.6        4.3    7.2   4.6    1.6  1  HCV_NS4a    Hepatitis C virus non-structural protein NS4a


Domain annotation for each model (and alignments):
>> Sigma70_r3  Sigma-70 region 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.1   4.1e-05      0.24      21      41 ..      47      67 ..      41      73 .. 0.89
   2 ?   -0.9   0.0       0.3   1.8e+03       4      27 ..     127     150 ..     121     162 .. 0.85

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 4.1e-05
                XXHHHHHHHHTXXHHHHHHHH CS
  Sigma70_r3 21 PtpeEiAeeLglseekVrevl 41
                Pt eE+A+e g+s++++++ +
  KOO24795.1 47 PTMEELAKEAGMSVAEYEKSM 67
                9****************9866 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 0.3
                 HHHHHHHHHHHHHHSSXXXHHHHH CS
  Sigma70_r3   4 nkikraqreLeqelgrePtpeEiA 27 
                 +ki+ a+ + + ++  +P ++E+ 
  KOO24795.1 127 RKIRSATTKKSDTMLIDPQAAELG 150
                 689999999999999999999986 PP

>> ArsD  Arsenical resistance operon trans-acting repressor ArsD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.8   0.1   0.00034         2      81     109 ..      39      67 ..      34      81 .. 0.85
   2 ?    1.1   0.0     0.079   4.7e+02      58      92 ..      92     126 ..      78     147 .. 0.71

  Alignments for each domain:
  == domain 1  score: 8.8 bits;  conditional E-value: 0.00034
        ArsD  81 eivktgrYptreelaewlgleeeeleeke 109
                 ++v +++Ypt eela+ +g++ +e e++ 
  KOO24795.1  39 KVVEEDNYPTMEELAKEAGMSVAEYEKSM 67 
                 8999*****************99988765 PP

  == domain 2  score: 1.1 bits;  conditional E-value: 0.079
        ArsD  58 nkavkellekkgaeaLPlvlvdgeivktgrYptre 92 
                 +k+++++ + +g+e  P + vd e + + +  + e
  KOO24795.1  92 KKVINNMRSASGVEFAPWMKVDAEAIAKAKMERAE 126
                 56777788888999999999998876665554444 PP

>> HCV_NS4a  Hepatitis C virus non-structural protein NS4a
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.2   4.6   0.00072       4.3       2      23 ..     257     277 ..     256     279 .. 0.88

  Alignments for each domain:
  == domain 1  score: 7.2 bits;  conditional E-value: 0.00072
    HCV_NS4a   2 pvvlvGlalAglAiyalttGSv 23 
                   vlvG+ +AglA+ al +G v
  KOO24795.1 257 QTVLVGVLIAGLAL-ALVVGGV 277
                 679**********9.**99975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (294 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       894  (0.0498633); expected 358.6 (0.02)
Passed bias filter:                      568  (0.0316805); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.49u 0.26s 00:00:00.75 Elapsed: 00:00:00.44
# Mc/sec: 2025.10
//
Query:       KOO24796.1  [L=73]
Description: hypothetical protein Ctob_005958 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      6e-07   29.1   3.5    7.5e-07   28.8   3.5    1.1  1  CorA      CorA-like Mg2+ transporter protein


Domain annotation for each model (and alignments):
>> CorA  CorA-like Mg2+ transporter protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.8   3.5   4.2e-11   7.5e-07     246     287 ..      18      58 ..      17      64 .. 0.72

  Alignments for each domain:
  == domain 1  score: 28.8 bits;  conditional E-value: 4.2e-11
        CorA 246 PlTlitGiyGmNfkglPelewsygypfvlllglmallailll 287
                 P T+ tG+yGmNf+ lPel++++ y++ + ++ +  l  l++
  KOO24796.1  18 P-TFFTGLYGMNFDVLPELHNENSYFALWGCFWIWWLGWLIF 58 
                 6.*******************998877755544433333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (73 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       383  (0.021362); expected 358.6 (0.02)
Passed bias filter:                      177  (0.00987227); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.33u 0.25s 00:00:00.58 Elapsed: 00:00:00.39
# Mc/sec: 567.56
//
Query:       KOO24797.1  [L=539]
Description: hypothetical protein Ctob_005964 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.1e-32  112.5  26.3    2.6e-32  112.2  26.3    1.1  1  AA_permease_2  Amino acid permease
    4.2e-11   42.1  25.7    3.2e-10   39.2  25.7    2.3  1  AA_permease    Amino acid permease


Domain annotation for each model (and alignments):
>> AA_permease_2  Amino acid permease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  112.2  26.3   2.9e-36   2.6e-32       9     418 ..      10     444 ..       1     454 [. 0.82

  Alignments for each domain:
  == domain 1  score: 112.2 bits;  conditional E-value: 2.9e-36
  AA_permease_2   9 lvigsvigsgifvknlaasggpa.lilwvwiavligslavllvyaElssalprsgGiyvytkaafgkkvaflsawfnwfayvpvlasilsvaasyl 103
                     v+g ++gs  +    + s gp+  i+ +++++l++s++++ + aEls+a+p +gG + +++aafg +++   ++++wf+ v+ +a++ +++ ++ 
     KOO24797.1  10 NVSGGPLGSEQV----VSSCGPIiGITLLCVFALCFSVPQAMITAELSTAFPYNGGYSLWVQAAFGTFWGVQESYYSWFSGVVDTALYPVLLYAAA 101
                    333344444444....55777765889999****************************************99999999999999999865555555 PP

  AA_permease_2 104 lnalgpdlqgn..........................................twltyliaiaililvalinirgikesakiqnilgilkillpli 157
                    +++l++ ++++                                            l y+i  +il++++l n+++ k ++ + + l  + +  p  
     KOO24797.1 102 QQLLSGLGFNTglvpnngatcinnstaaaaadddddepgarnlwlcmfepqsgCALEYGIKLGILVFFCLPNLISSKVVGDFLTLLCAFAL-AP-- 194
                    55554422333455558999999***************************9975588************************9999999999.69.. PP

  AA_permease_2 158 iliilglitvdgggfsslstetdtffpngwpgvllglli.vlwsfdGfesaanvseevkk..kdvpkaifigllivlvlyllvniaflgvvpddei 250
                    +++++++ + + ++ +         + +  +  +++ll    ws++Gf++a+ ++ ev++  k++p+a+f+g+++v++ + +  + ++++ p  + 
     KOO24797.1 195 FFVLCAVGLPQMSMGN--------LMREPPQYDWGTLLStLYWSMTGFDCASTIAGEVERpgKTIPRALFLGVAMVGLATGGPLLIAAAADPGWNC 282
                    8999999999888886........466666666777666357***************998889*************99988886666665555555 PP

  AA_permease_2 251 anlsnlgsvaalffeavggkvvaiivvilialsllgaintavigssrvlealardgvlPrffakvn.kfgspiraiiltaivslillllfllassa 345
                     + +++   +   +  vgg+++ + +    +ls +g   + ++  s++l  +a+ g  Prffa+v+ ++g+pi+ai +++++    ++l++l    
     KOO24797.1 283 WQ-DGS---LVTAATVVGGSWLGAWMLGTSILSNWGLFASELLEDSYQLLGMAEMGLAPRFFASVSpRTGTPINAILFQFVII---AVLISL---- 367
                    43.443...34678889999************************************************************995...345555.... PP

  AA_permease_2 346 aynfllsvsslgliisyllliigalilrkkrphlkrpgkilvaiigalfllfll....valffppkgpatqssliyt 418
                    ++n ++ + ++++     l +++ + lr+krp+  rp+ki++++ g+ ++l++      ++++++++ ++qs   ++
     KOO24797.1 368 DFNSIMCIDNFFSAAQGVLEFAAIVRLRIKRPEMARPYKIPLSTAGLALFLIVPicwsLLICYVTVTDSVQSAATIS 444
                    8**************************************99999887666666444556666767666666654444 PP

>> AA_permease  Amino acid permease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.2  25.7   3.5e-14   3.2e-10      18     430 ..      17     435 ..      13     460 .. 0.79

  Alignments for each domain:
  == domain 1  score: 39.2 bits;  conditional E-value: 3.5e-14
  AA_permease  18 glgvvlsqaGpl.gallayllagvviflvmlslgeiatngpksggfytyasrflgpelGfviGlnylfswitvlale....ltaasiliqfwelvtd. 109
                  g+  v+s++Gp+ g+ l  ++a  +++  +++++e++t++p +gg++ +++   g  +G+  ++  +fs+++  al     ++aa+ l++ ++++t  
   KOO24797.1  17 GSEQVVSSCGPIiGITLLCVFALCFSVPQAMITAELSTAFPYNGGYSLWVQAAFGTFWGVQESYYSWFSGVVDTALYpvllYAAAQQLLSGLGFNTGl 114
                  6667888888861559999999999999*******************************************999875222266778888888885541 PP

  AA_permease 110 lpkawvt........................................gavflvvlliinlvgvkvygeaefilalikiiaiiafiivgiillaggkpn 167
                  +p   +t                                         + +lv++++ nl++ kv g + ++l+ +++  +  +  vg   ++ g++ 
   KOO24797.1 115 VPNNGATcinnstaaaaadddddepgarnlwlcmfepqsgcaleygiKLGILVFFCLPNLISSKVVGDFLTLLCAFALAPFFVLCAVGLPQMSMGNLM 212
                  4544455**************************************99677999999************777777777777777777775455555555 PP

  AA_permease 168 kgagfrflgdngsifknnlppgfakeeegafknfisvfvivvfaftGielvaiiagEvkdPeksiPkailqvviritifYvlsllligllvp.rndlg 264
                  ++                 pp+         +++  ++++++ ++tG+    +iagEv+ P k+iP+a    v +++++  + ll++ +  p +n  +
   KOO24797.1 213 RE-----------------PPQ---------YDWGTLLSTLYWSMTGFDCASTIAGEVERPGKTIPRALFLGVAMVGLATGGPLLIAAAADPgWNCWQ 284
                  55.................344.........69***************************************99999987665555555544144433 PP

  AA_permease 265 llndsasaaspfvifikesgvsvlaplinaviltaalssansslysasRvlyslakdglaP.kvlkkvskrgvPlraillsmiisllalllaslnlaa 361
                             +v++ +  g s l+  +  +++++ ++   s l   s +l  +a+ glaP ++++++ + g P++ail+ ++i ++++    +n++ 
   KOO24797.1 285 DG--------SLVTAATVVGGSWLGAWMLGTSILSNWGLFASELLEDSYQLLGMAEMGLAPrFFASVSPRTGTPINAILFQFVIIAVLI-SLDFNSI- 372
                  33........46777888999****************************************99999999***************99998.9999999. PP

  AA_permease 362 pivfnfllaisaliglivwlliilsylrfRkalkyqgrsieelgfkaallplgvilvlaaliiillila 430
                    + nf++a+ ++  ++  +   ++ +       ++  +i ++ + +al+   +i ++ +li ++++++
   KOO24797.1 373 MCIDNFFSAAQGVLEFAAIVRLRIKRPE-----MARPYKIPLSTAGLALFLIVPI-CWSLLICYVTVTD 435
                  88999****9999999754444444442.....2333333333333333333333.3344444444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (539 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       653  (0.0364214); expected 358.6 (0.02)
Passed bias filter:                      386  (0.0215294); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.54u 0.25s 00:00:00.79 Elapsed: 00:00:00.40
# Mc/sec: 4084.82
//
Query:       KOO24798.1  [L=351]
Description: hypothetical protein Ctob_005965 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.1e-13   50.0   5.4    4.7e-07   29.0   0.4    2.6  2  EF-hand_5       EF hand
    7.2e-12   44.0   9.4    6.1e-06   25.4   1.1    2.4  2  EF-hand_1       EF hand
    6.7e-11   41.2   7.2    1.4e-05   24.7   0.6    2.4  2  EF-hand_6       EF-hand domain
    1.3e-09   38.3   5.1    3.8e-09   36.9   5.0    1.8  1  EF-hand_7       EF-hand domain pair
    7.7e-06   25.7   7.4      0.023   14.5   0.8    2.5  2  EF-hand_8       EF-hand domain pair
     0.0004   21.1  26.5       0.23   12.2   0.4    4.2  3  KIAA1430        KIAA1430 homologue
     0.0073   16.2   3.8        1.9    8.5   0.7    2.7  2  EF-hand_4       Cytoskeletal-regulatory complex EF hand
  ------ inclusion threshold ------
        1.6    8.0   9.9        3.3    7.0   9.9    1.5  1  CorA            CorA-like Mg2+ transporter protein


Domain annotation for each model (and alignments):
>> EF-hand_5  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.0   0.4   2.1e-10   4.7e-07       1      25 []      17      41 ..      17      41 .. 0.94
   2 !   22.8   0.7   1.9e-08   4.3e-05       4      24 ..      61      81 ..      58      82 .. 0.93

  Alignments for each domain:
  == domain 1  score: 29.0 bits;  conditional E-value: 2.1e-10
                HHHHHHHH-SS-SSCE-HHHHHHHH CS
   EF-hand_5  1 lkdtFqaiDlNgDGkIskeELktlv 25
                l++tF+++D +g+G+I++eEL +l+
  KOO24798.1 17 LRKTFDRFDIDGSGTIDMEELLALM 41
                789******************9886 PP

  == domain 2  score: 22.8 bits;  conditional E-value: 1.9e-08
                HHHHH-SS-SSCE-HHHHHHH CS
   EF-hand_5  4 tFqaiDlNgDGkIskeELktl 24
                +F ++D+N DG +++eE+k++
  KOO24798.1 61 MFARFDVNDDGVLDFEEFKQF 81
                79*****************98 PP

>> EF-hand_1  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.4   1.1   2.7e-09   6.1e-06       2      27 ..      17      42 ..      16      44 .. 0.92
   2 !   22.9   1.7   1.7e-08   3.8e-05       4      25 ..      60      81 ..      57      81 .. 0.93

  Alignments for each domain:
  == domain 1  score: 25.4 bits;  conditional E-value: 2.7e-09
                HHHHHHHHTTTSSSEEEHHHHHHHHH CS
   EF-hand_1  2 lkeiFrefDkDgdGkIdfeEfkellk 27
                l++ F+ fD Dg+G+Id eE+++l+ 
  KOO24798.1 17 LRKTFDRFDIDGSGTIDMEELLALMD 42
                799********************996 PP

  == domain 2  score: 22.9 bits;  conditional E-value: 1.7e-08
                HHHHHHTTTSSSEEEHHHHHHH CS
   EF-hand_1  4 eiFrefDkDgdGkIdfeEfkel 25
                ++F+ fD++ dG +dfeEfk++
  KOO24798.1 60 QMFARFDVNDDGVLDFEEFKQF 81
                8******************986 PP

>> EF-hand_6  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.7   0.6     6e-09   1.4e-05       2      29 ..      17      43 ..      16      47 .. 0.91
   2 !   19.5   1.0   2.8e-07   0.00063       5      26 ..      61      82 ..      58      88 .. 0.91

  Alignments for each domain:
  == domain 1  score: 24.7 bits;  conditional E-value: 6e-09
   EF-hand_6  2 lreaFklfDkdgdGkidaeElrkalrka 29
                lr+ F+ fD dg+G+id+eEl +++  +
  KOO24798.1 17 LRKTFDRFDIDGSGTIDMEELLALMD-D 43
                899********************998.4 PP

  == domain 2  score: 19.5 bits;  conditional E-value: 2.8e-07
   EF-hand_6  5 aFklfDkdgdGkidaeElrkal 26
                 F  fD+++dG +d+eE++++ 
  KOO24798.1 61 MFARFDVNDDGVLDFEEFKQFH 82
                7******************986 PP

>> EF-hand_7  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.9   5.0   1.7e-12   3.8e-09       4      69 ..      17      81 ..      14      82 .. 0.77

  Alignments for each domain:
  == domain 1  score: 36.9 bits;  conditional E-value: 1.7e-12
   EF-hand_7  4 lkeaFkelDtdgdgyldkeellrllrkifqgagegsklsd...eelellfkefDtdkdGvisfdEFlkl 69
                l+  F+ +D dg+g +d+eell l+  +    g   +l +   +   ++f  fD ++dGv++f+EF+++
  KOO24798.1 17 LRKTFDRFDIDGSGTIDMEELLALMDDM----GLLRDLKSdpvDFASQMFARFDVNDDGVLDFEEFKQF 81
                7788****************99877755....344444441124466889999*************997 PP

>> EF-hand_8  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.1   1.0   1.4e-05     0.032      32      53 ..      21      42 ..      20      43 .. 0.94
   2 !   14.5   0.8     1e-05     0.023      31      51 ..      61      81 ..      57      83 .. 0.93

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 1.4e-05
   EF-hand_8 32 frefDtdgdGkisfeEFcvlle 53
                f++fD+dg+G+i+ eE ++l+ 
  KOO24798.1 21 FDRFDIDGSGTIDMEELLALMD 42
                89*****************996 PP

  == domain 2  score: 14.5 bits;  conditional E-value: 1e-05
   EF-hand_8 31 lfrefDtdgdGkisfeEFcvl 51
                +f +fD ++dG+++feEF ++
  KOO24798.1 61 MFARFDVNDDGVLDFEEFKQF 81
                999***************875 PP

>> KIAA1430  KIAA1430 homologue
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.6   0.1   0.00017      0.37      70     101 ..     113     147 ..      90     148 .. 0.71
   2 !   12.2   0.4    0.0001      0.23      78     101 ..     172     198 ..     150     199 .. 0.72
   3 ?    0.6  16.0      0.42   9.4e+02      29     101 ..     217     342 ..     202     343 .. 0.71

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 0.00017
    KIAA1430  70 ksktasksl...naenrkkelqkIeeENqkllkRl 101
                 ++++a+ ++   +a+++  e+++I +EN +l+ Rl
  KOO24798.1 113 EQQAARRKVaeeKARKKALEADRIRKENAALKARL 147
                 33444444422233444556**************9 PP

  == domain 2  score: 12.2 bits;  conditional E-value: 0.0001
    KIAA1430  78 l...naenrkkelqkIeeENqkllkRl 101
                 l    ae + +e+++Ie EN +l++R+
  KOO24798.1 172 LakqRAETKAREAARIEAENAALKQRI 198
                 233367889999**************9 PP

  == domain 3  score: 0.6 bits;  conditional E-value: 0.42
    KIAA1430  29 klqleeerlkeiereNqiLleklseimrrkgk..............kksassqsqksktasksl................................... 78 
                 ++q e+erl++   e q+Lle+ ++  +r                 +                +                                   
  KOO24798.1 217 RMQAEKERLANQAAEKQRLLEHAQQLAERTAAaqavtvnqlsaeenS----------------Mrqqaakqaaeardarltaereaeramkaklnsiga 299
                 67889999999999999999999999999955666655444332221................111112223344556667788888888888899999 PP

    KIAA1430  79 ....................naenrkkelqkIeeENqkllkRl 101
                                      +++++ ++q I+e+N ++ +Rl
  KOO24798.1 300 atvnalspeeeelrrqtaarIEAQNQAKAQAIAEQNLQMSQRL 342
                 9999999997777777777777778888888888888888887 PP

>> EF-hand_4  Cytoskeletal-regulatory complex EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.9   0.2    0.0013         3      38      69 ..      10      41 ..       2      53 .. 0.84
   2 !    8.5   0.7   0.00084       1.9      46      65 ..      59      78 ..      46      84 .. 0.85

  Alignments for each domain:
  == domain 1  score: 7.9 bits;  conditional E-value: 0.0013
   EF-hand_4 38 skleedklekiwdladidedgkldfeefciam 69
                ++ ++  l k +d  did  g++d+ee+   m
  KOO24798.1 10 AEERDRSLRKTFDRFDIDGSGTIDMEELLALM 41
                55678899*******************98776 PP

  == domain 2  score: 8.5 bits;  conditional E-value: 0.00084
   EF-hand_4 46 ekiwdladidedgkldfeef 65
                ++++   d+++dg ldfeef
  KOO24798.1 59 SQMFARFDVNDDGVLDFEEF 78
                5667778************9 PP

>> CorA  CorA-like Mg2+ transporter protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.0   9.9    0.0015       3.3      98     232 ..     130     263 ..     113     266 .. 0.86

  Alignments for each domain:
  == domain 1  score: 7.0 bits;  conditional E-value: 0.0015
        CorA  98 lkdeggkpkspgellyrlldeivdrlfellekleeeldeledeledstkkeilrelaqlrrrlvklrralapnrevlkrllakaddkllddedkeylrd 196
                 +  e ++ ++    l + l + ++   +  + l++e + + +el +++ +  +re a+++ + + l++ + +  ++ +++l+ a++    +++ke+l +
  KOO24798.1 130 AL-EADRIRKENAALKARLKARAEAGGADQKSLDAEYEAARRELAKQRAETKAREAARIEAENAALKQRIGHVSAATENHLSGAHEVARMQAEKERLAN 227
                 44.4566666666666666666777777778899*******************************************99999777777777888***** PP

        CorA 197 lldelerllemlealrerleslqdtyssllserlNr 232
                    e +rlle++++l+er+   q    ++ls + N 
  KOO24798.1 228 QAAEKQRLLEHAQQLAERTAAAQAVTVNQLSAEENS 263
                 *******************************99985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (351 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2492  (0.138993); expected 358.6 (0.02)
Passed bias filter:                      426  (0.0237604); expected 358.6 (0.02)
Passed Vit filter:                        81  (0.00451782); expected 17.9 (0.001)
Passed Fwd filter:                        32  (0.00178482); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.78u 0.32s 00:00:01.10 Elapsed: 00:00:00.46
# Mc/sec: 2294.70
//
Query:       KOO24799.1  [L=937]
Description: hypothetical protein Ctob_005960, partial [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.21   11.2   0.3       0.34   10.4   0.3    1.2  1  TMCO5     TMCO5 family
       0.61   10.3   5.3        0.9    9.8   0.2    3.1  3  DUF4771   Domain of unknown function (DUF4771)


Domain annotation for each model (and alignments):
>> TMCO5  TMCO5 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.3   3.8e-05      0.34      49     137 ..     577     663 ..     562     675 .. 0.83

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 3.8e-05
       TMCO5  49 reedeeenfsenekedalkeLeletaklekkneiLlkevveLqkkisrkeskqddleketlkqkleelkvklqkseescaeqekelakv 137
                 + e  e   s++ +++al+   + ++k+ ++ ++Ll+   +L + + ++ +   + e+  ++++++ +  +l+  e+ + + e+ la +
  KOO24799.1 577 AAEGRE-AESAQARQEALRVTAESSSKFAESAQALLRTTQSLSEAVAELRQSGAKRER-FVEETVDATASRLDTIEKQLRRTEQLLAPL 663
                 444444.567788999****99***************************965555555.99********************99999866 PP

>> DUF4771  Domain of unknown function (DUF4771)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.0      0.33   2.9e+03     114     135 ..     107     128 ..      92     134 .. 0.80
   2 ?    9.8   0.2    0.0001       0.9      78     139 ..     308     369 ..     280     377 .. 0.76
   3 ?    1.2   0.3     0.043   3.9e+02     109     140 ..     510     541 ..     464     549 .. 0.77

  Alignments for each domain:
  == domain 1  score: -1.6 bits;  conditional E-value: 0.33
     DUF4771 114 keyrkklneklleesrllwlam 135
                  ++ +++ +++l++  l+w  +
  KOO24799.1 107 GRFARRMVQRALSKAWLCWVDL 128
                 579999*************866 PP

  == domain 2  score: 9.8 bits;  conditional E-value: 0.0001
     DUF4771  78 kkelkklpslkllklkkkkitfadkkklkkkakklkkeyrkklneklleesrllwlamenyl 139
                 ++++   p ++llk ++  i f + k  +++ak l+k+y  k+ + ll ++  +w a+ +++
  KOO24799.1 308 RRQQLIRPFVNLLKNRTLTIVFRAWKDSTAEAKALRKRYAAKIVHTLLAKTFGAWAALTAQM 369
                 3333334556667777779999************************************9876 PP

  == domain 3  score: 1.2 bits;  conditional E-value: 0.043
     DUF4771 109 akklkkeyrkklneklleesrllwlamenyla 140
                   +l +++  + ++++l ++ l+w a+ +++a
  KOO24799.1 510 RFELTTKFMARYKNAALAKTFLAWVALTAHEA 541
                 336778899999999************99876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (937 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1082  (0.0603492); expected 358.6 (0.02)
Passed bias filter:                      431  (0.0240393); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.75u 0.26s 00:00:01.01 Elapsed: 00:00:00.43
# Mc/sec: 6492.33
//
Query:       KOO24800.1  [L=158]
Description: hypothetical protein Ctob_005966 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (158 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       443  (0.0247086); expected 358.6 (0.02)
Passed bias filter:                      380  (0.0211947); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.41u 0.23s 00:00:00.64 Elapsed: 00:00:00.41
# Mc/sec: 1162.00
//
Query:       KOO24801.1  [L=242]
Description: hypothetical protein Ctob_005967 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.2e-52  178.7   0.0    1.5e-52  178.5   0.0    1.1  1  H2O2_YaaD  Peroxide stress protein YaaA
  ------ inclusion threshold ------
      0.091   13.1   0.0       0.14   12.6   0.0    1.2  1  DUF4413    Domain of unknown function (DUF4413)


Domain annotation for each model (and alignments):
>> H2O2_YaaD  Peroxide stress protein YaaA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  178.5   0.0   1.6e-56   1.5e-52      43     229 ..       3     195 ..       1     199 [. 0.92

  Alignments for each domain:
  == domain 1  score: 178.5 bits;  conditional E-value: 1.6e-56
   H2O2_YaaD  43 eeelkkllkisdklaelnveryqefeealkkkpAilaynGvvYkaldaeslseedleyaqehlrIlSglYGlLrpldliqpYRLemgtklanek..dLy 139
                 +++lk+l+++sd+la+ln++ry++f+e ++ + Ai a++G +Yk++da +l+++dley+  +lrIl+g YG+L p+d i+pYRLem t+la+ +  +Ly
  KOO24801.1   3 KAQLKSLMSLSDSLAALNHARYSAFAE-QEARIAIGAFEGAAYKGMDAPTLKADDLEYLCASLRILCGQYGVLVPTDEIRPYRLEMSTRLAVGEnpNLY 100
                 689**********************76.46788**********************************************************99668*** PP

   H2O2_YaaD 140 efWgekltealne........eevlvnLaSkeyskavkpkklka...kvitvvFkeekngklkvvsvyaKkaRGlmvryiaenriesveeLkef..dee 225
                 ++W++++t  l +         ++++n+aS+ey+kav+ k+l++   +vit vF     g     +v+aK aRG+mvr++a++r++++ eL++f  ++ 
  KOO24801.1 101 KYWSDDITASLCSevldperkVTFVLNVASQEYAKAVDLKRLAQagaQVITAVF----PG----PAVHAKTARGEMVRFCAQRRVTKPGELTAFtgTRG 191
                 *******************9966****************999544669******....45....89****************************55555 PP

   H2O2_YaaD 226 gYrf 229
                 +++f
  KOO24801.1 192 EWAF 195
                 6665 PP

>> DUF4413  Domain of unknown function (DUF4413)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   1.5e-05      0.14      43      81 ..      98     136 ..      77     154 .. 0.74

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 1.5e-05
     DUF4413  43 kfdkywkksnlllaiaviLDPryKlkyvefalkkiyged 81 
                 ++ kyw++   + +++ +LDP+ K+ +v +  ++ y + 
  KOO24801.1  98 NLYKYWSDDITASLCSEVLDPERKVTFVLNVASQEYAKA 136
                 789***87777777889***********99999888554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (242 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       417  (0.0232584); expected 358.6 (0.02)
Passed bias filter:                      320  (0.0178482); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.43u 0.24s 00:00:00.67 Elapsed: 00:00:00.40
# Mc/sec: 1798.78
//
Query:       KOO24802.1  [L=1605]
Description: glucose-6-phosphate isomerase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
   2.9e-238  791.3   0.0   3.7e-238  791.0   0.0    1.1  1  PGI         Phosphoglucose isomerase
    2.6e-21   73.5   6.5    4.5e-05   22.7   0.3    4.7  4  EF-hand_1   EF hand
    2.2e-20   70.8   5.3    1.3e-05   24.7   0.1    4.7  4  EF-hand_6   EF-hand domain
      1e-19   70.8   1.5    9.8e-09   35.5   0.0    3.1  2  EF-hand_7   EF-hand domain pair
    1.7e-14   53.4   5.3    6.3e-06   25.9   0.3    4.8  4  EF-hand_8   EF-hand domain pair
    3.5e-11   43.0   0.0    7.3e-11   41.9   0.0    1.6  1  Ras         Ras family
    6.2e-10   38.1   9.2     0.0034   16.8   0.2    4.4  4  EF-hand_5   EF hand
    3.7e-05   23.9   0.0    7.8e-05   22.9   0.0    1.5  1  Roc         Ras of Complex, Roc, domain of DAPkinase
     0.0001   22.1   0.2         15    5.5   0.0    4.4  4  EF-hand_10  EF hand
     0.0034   17.3   1.9       0.93    9.5   0.1    4.1  4  EF-hand_4   Cytoskeletal-regulatory complex EF hand
     0.0087   15.5   0.0      0.019   14.4   0.0    1.5  1  Arf         ADP-ribosylation factor family
  ------ inclusion threshold ------
      0.015   14.7   0.0      0.028   13.8   0.0    1.4  1  SRPRB       Signal recognition particle receptor beta subunit
       0.17   11.3   0.1        1.4    8.2   0.0    2.4  2  TniB        Bacterial TniB protein


Domain annotation for each model (and alignments):
>> PGI  Phosphoglucose isomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  791.0   0.0  2.7e-241  3.7e-238       1     486 []     751    1242 ..     751    1242 .. 0.99

  Alignments for each domain:
  == domain 1  score: 791.0 bits;  conditional E-value: 2.7e-241
                  E-TTSS--HHHHHHHHHHHHHTTHHHHHHHHHTT---BTTTTB---HHHHT-TT----EETTEESHHHHHHHHHHHHHHHHHHHTT-SB-TTS-B-- CS
         PGI    1 dysknkvddeilealvklaeeaklkaarealfaGekinstenravlhvalrnrsnkpilvdGkdvvpevkevldkmkefsekvrsGewkGatgkait 97  
                  dyskn v+de+++ l ++ +ea++  +++++faGekin te+ravlhvalrnr+n+pi+vdG dv+pev+evl k+  f++kvrsGew G tgk+it
  KOO24802.1  751 DYSKNIVTDETMSLLETMCKEADVLGEAKKMFAGEKINATEKRAVLHVALRNRANTPIIVDGADVMPEVNEVLGKLEVFVNKVRSGEWLGFTGKKIT 847 
                  9************************************************************************************************ PP

                  EEEEE--GGGTHHHHHHHHHTGGG-TT..-EEEEE--SSHHHHHHHHTT--GGGEEEEEE-SSS--HHHHHHHHHHHHHHHHHH--GGGGGGTEEEE CS
         PGI   98 dvvniGiGGsdlGPvlvtealkkeser..lkvafvsnvdgthiaevlkkldpettlfivasktfttaetllnaesakewllkalkedsavakhfval 192 
                  dvvn+GiGGsdlGPv+vtealk++++   lkv+fvsnvdgth++evl+ l+ ettlf++asktftt+et++na +ak wll +l+++ ++akhf+al
  KOO24802.1  848 DVVNLGIGGSDLGPVMVTEALKPYTRGtdLKVHFVSNVDGTHVQEVLRPLNAETTLFLIASKTFTTQETMTNAGTAKAWLLGKLTDPASIAKHFAAL 944 
                  ************************9887799****************************************************************** PP

                  SS-HHHHHHHT--GGGEEE--TTS-GGG-TTSGGGHHHHHHH-HHHHHHHHHHHHHHHHHHHHS-GGG-HHHHHHHHHHHHHHTS---EEEEEES-G CS
         PGI  193 stnaekveefGideknmfefwdwvGGryslwsaiGlsvalsiGfenfeelleGaaaidkhfleaplekniPvllalvgvwyvnflgaeteailpydq 289 
                  stna+ v+ fGid++nmf fwdwvGGrys wsaiG s+al+iG+enf e+l+Ga+++d+hfl+ap+  n+P+lla +gvwy nf+gae++ailpydq
  KOO24802.1  945 STNASAVSAFGIDTSNMFGFWDWVGGRYSSWSAIGTSIALAIGWENFIEFLTGAHEMDNHFLSAPFRSNLPMLLAALGVWYGNFFGAESHAILPYDQ 1041
                  ************************************************************************************************* PP

                  GGTTHHHHHHHHHHHHH---BBTTS-B-SS--S-EEE---TTTGGGTSHHHHHHSSS---EEEEEEEE-S-GGGGHHHHHHHHHHHHHHHHHHH-B- CS
         PGI  290 ylerlaaylqqldmesnGksvtkdgvlvdvetgeiifGeagtngqhafyqlihqGtkliPcdfiaavksqnieiadhhkillsnffaqtealmvGks 386 
                  yl+r+ aylqq+dmesnGk+vt+ g+ v v+tg+ii+Ge+gtngqhafyqlihqGtkliPcdf+a+v +qn  +++hh illsnffaqtealm+Gks
  KOO24802.1 1042 YLHRFGAYLQQGDMESNGKRVTRGGQPVTVSTGPIIWGEPGTNGQHAFYQLIHQGTKLIPCDFLAPVITQN-PVGEHHPILLSNFFAQTEALMMGKS 1137
                  ***********************************************************************.************************* PP

                  HHHHHHHHHHT.....HHHHHGGGG-B-----EEEEEEEE--HHHHHHHHHHHHHHHHHHHHHHTB-TT--GGGHHHHHHHHHHHHHHSSS----SS CS
         PGI  387 eeevkkelaka.....kveklvphktfeGnrPsnsillekltpaelGalialyehkilvqGviwginsfdqwGvelGkelakkilkeleasekvsdf 478 
                  +eev++el+k      +v  l phk+f Gn+P+nsi+++kltp+ lG+lia+yehki+ qG+iw+insfdqwGvelGkelakkil+e+++  +v+++
  KOO24802.1 1138 DEEVRAELSKKgmsadEVAFLAPHKVFPGNKPTNSIMFDKLTPRCLGSLIAMYEHKIFCQGIIWDINSFDQWGVELGKELAKKILPEITSPGEVTSH 1234
                  *******9988899989999***************************************************************************** PP

                  -HHHHHHH CS
         PGI  479 dsstngli 486 
                  d+stngli
  KOO24802.1 1235 DASTNGLI 1242
                  *******8 PP

>> EF-hand_1  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.0   0.2   5.5e-08   7.6e-05       2      27 ..     243     268 ..     242     270 .. 0.94
   2 !   11.7   0.0   0.00011      0.15       5      28 ..     282     305 ..     279     306 .. 0.93
   3 !   22.7   0.3   3.3e-08   4.5e-05       4      27 ..     422     445 ..     419     447 .. 0.90
   4 !   17.4   0.1   1.6e-06    0.0022       1      28 [.     455     482 ..     455     483 .. 0.93

  Alignments for each domain:
  == domain 1  score: 22.0 bits;  conditional E-value: 5.5e-08
                 HHHHHHHHTTTSSSEEEHHHHHHHHH CS
   EF-hand_1   2 lkeiFrefDkDgdGkIdfeEfkellk 27 
                 l+eiF+++D+ gdG +d +Ef+++l+
  KOO24802.1 243 LREIFSMLDTSGDGVLDMDEFLAMLQ 268
                 79*********************996 PP

  == domain 2  score: 11.7 bits;  conditional E-value: 0.00011
                 HHHHHTTTSSSEEEHHHHHHHHHH CS
   EF-hand_1   5 iFrefDkDgdGkIdfeEfkellkk 28 
                 +F+++D D+ G++d  Ef++++++
  KOO24802.1 282 LFALVDNDRGGTVDGAEFVQFVRR 305
                 7********************986 PP

  == domain 3  score: 22.7 bits;  conditional E-value: 3.3e-08
                 HHHHHHTTTSSSEEEHHHHHHHHH CS
   EF-hand_1   4 eiFrefDkDgdGkIdfeEfkellk 27 
                 ++Fr+fD+D+dG Id  Ef+e+++
  KOO24802.1 422 KLFRIFDRDNDGGIDPYEFREICS 445
                 89*******************986 PP

  == domain 4  score: 17.4 bits;  conditional E-value: 1.6e-06
                 HHHHHHHHHTTTSSSEEEHHHHHHHHHH CS
   EF-hand_1   1 elkeiFrefDkDgdGkIdfeEfkellkk 28 
                 e +e+F  +D D+dG+++  Ef +l+k+
  KOO24802.1 455 EARELFVGADEDNDGTLNVAEFTQLIKR 482
                 67999********************997 PP

>> EF-hand_6  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.7   0.1   9.5e-09   1.3e-05       2      27 ..     243     268 ..     242     271 .. 0.94
   2 !   12.4   0.0   8.4e-05      0.12       5      28 ..     282     305 ..     281     313 .. 0.90
   3 !   20.7   0.2   1.9e-07   0.00026       4      29 ..     422     446 ..     419     448 .. 0.89
   4 !   11.9   0.0   0.00013      0.17       2      27 ..     456     481 ..     455     491 .. 0.91

  Alignments for each domain:
  == domain 1  score: 24.7 bits;  conditional E-value: 9.5e-09
   EF-hand_6   2 lreaFklfDkdgdGkidaeElrkalr 27 
                 lre+F ++D++gdG +d++E+ ++l+
  KOO24802.1 243 LREIFSMLDTSGDGVLDMDEFLAMLQ 268
                 89**********************97 PP

  == domain 2  score: 12.4 bits;  conditional E-value: 8.4e-05
   EF-hand_6   5 aFklfDkdgdGkidaeElrkalrk 28 
                 +F l D+d+ G++d +E++++ r+
  KOO24802.1 282 LFALVDNDRGGTVDGAEFVQFVRR 305
                 8*******************9985 PP

  == domain 3  score: 20.7 bits;  conditional E-value: 1.9e-07
   EF-hand_6   4 eaFklfDkdgdGkidaeElrkalrka 29 
                 ++F++fD+d+dG id+ E+r +++ +
  KOO24802.1 422 KLFRIFDRDNDGGIDPYEFREICS-L 446
                 79*******************998.5 PP

  == domain 4  score: 11.9 bits;  conditional E-value: 0.00013
   EF-hand_6   2 lreaFklfDkdgdGkidaeElrkalr 27 
                  re+F   D d+dG+++ +E+ ++++
  KOO24802.1 456 ARELFVGADEDNDGTLNVAEFTQLIK 481
                 6899999***************9998 PP

>> EF-hand_7  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.5   0.0   7.1e-12   9.8e-09       1      71 []     240     304 ..     240     304 .. 0.90
   2 !   32.5   0.7   6.5e-11   8.9e-08       6      70 ..     422     480 ..     417     481 .. 0.93

  Alignments for each domain:
  == domain 1  score: 35.5 bits;  conditional E-value: 7.1e-12
   EF-hand_7   1 eeklkeaFkelDtdgdgyldkeellrllrkifqgagegsklsdeelellfkefDtdkdGvisfdEFlklyr 71 
                 ee+l+e+F +lDt gdg ld++e+l +l+        g+ l+   l +lf  +D d+ G+++  EF++++r
  KOO24802.1 240 EEALREIFSMLDTSGDGVLDMDEFLAMLQ------IIGETLPAAVLPRLFALVDNDRGGTVDGAEFVQFVR 304
                 689********************998999......5566666677889********************986 PP

  == domain 2  score: 32.5 bits;  conditional E-value: 6.5e-11
   EF-hand_7   6 eaFkelDtdgdgyldkeellrllrkifqgagegsklsdeelellfkefDtdkdGvisfdEFlkly 70 
                   F+ +D+d+dg +d+ e+++++         g++ ++ e ++lf   D d+dG+++  EF +l+
  KOO24802.1 422 KLFRIFDRDNDGGIDPYEFREICS------LFGDHATEAEARELFVGADEDNDGTLNVAEFTQLI 480
                 46**********************......999999*************************9987 PP

>> EF-hand_8  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.1   0.1   1.5e-07    0.0002      23      53 ..     238     268 ..     210     269 .. 0.84
   2 ?    2.4   0.0      0.11   1.5e+02      31      54 ..     282     305 ..     273     306 .. 0.92
   3 !    8.0   0.6    0.0018       2.5      31      48 ..     423     440 ..     416     440 .. 0.88
   4 !   25.9   0.3   4.6e-09   6.3e-06       2      51 ..     432     479 ..     432     482 .. 0.93

  Alignments for each domain:
  == domain 1  score: 21.1 bits;  conditional E-value: 1.5e-07
   EF-hand_8  23 lseeevdilfrefDtdgdGkisfeEFcvlle 53 
                  see+++++f+ +Dt gdG+++ +EF+++l+
  KOO24802.1 238 QSEEALREIFSMLDTSGDGVLDMDEFLAMLQ 268
                 699**************************97 PP

  == domain 2  score: 2.4 bits;  conditional E-value: 0.11
   EF-hand_8  31 lfrefDtdgdGkisfeEFcvller 54 
                 lf ++D d+ G+++  EF++++ r
  KOO24802.1 282 LFALVDNDRGGTVDGAEFVQFVRR 305
                 78899**************99875 PP

  == domain 3  score: 8.0 bits;  conditional E-value: 0.0018
   EF-hand_8  31 lfrefDtdgdGkisfeEF 48 
                 lfr fD+d+dG i+  EF
  KOO24802.1 423 LFRIFDRDNDGGIDPYEF 440
                 8***********986555 PP

  == domain 4  score: 25.9 bits;  conditional E-value: 4.6e-09
   EF-hand_8   2 kgkItreelrrilrilglkkglseeevdilfrefDtdgdGkisfeEFcvl 51 
                 +g I++ e+r+i +++g +   +e e+++lf  +D+d+dG+++  EF +l
  KOO24802.1 432 DGGIDPYEFREICSLFGDH--ATEAEARELFVGADEDNDGTLNVAEFTQL 479
                 799********99***977..**************************876 PP

>> Ras  Ras family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.9   0.0   5.3e-14   7.3e-11       2     159 ..     529     688 ..     528     691 .. 0.91

  Alignments for each domain:
  == domain 1  score: 41.9 bits;  conditional E-value: 5.3e-14
                 EEEEESTTSSHHHHHHHHHHSSCSSSCTTTSSEEEEEEEEEETTEEEEEEEEEETTSGGGHHHHHHHHTTESEEEEEEETTBHHHHHTHHHHHHHHHHH CS
         Ras   2 lvlvGdsavGKtslllrfvkdkFkeeyesTigvdfytkeievdgkevkleiwDTAGqeefkslrelyyrdaegillvyditsresfenvkkwveeikrv 100
                 l+++G+s  GKt +l++  +dk ++  +  +gv   +  +++ + +v +++ D  G  ++  l +l+y  +  ++l++d ts esfe ++ +++ ++r 
  KOO24802.1 529 LLIMGSSKSGKTYVLNQVLEDKLPKGCTVSVGVGGIV--LRLGQFSVAVQVIDIPGDPRYAPLGTLFYAATPYVILMFDATSFESFEALQPLLDAFRRA 625
                 789**********************988888777665..66788999*********************************************9999998 PP

                 ST...TTSEEEEEEETTTGGGG-SS-HHHHHHHHHHHT.SEEEEEBTTTTCTHHHHHHHHHHH CS
         Ras 101 ae...envpivLvGnKvDleekravsteegeelakelg.lkfletSAktnenveeafeellre 159
                  +      + ++v+n + +  k+av+   + ++++++g ++f+++  +  +++ ea+  l+++
  KOO24802.1 626 NPacdPAQHACVVANEARVGMKHAVTPGLALQWCEQNGdIPFFNIDPQAPQGILEALRCLADH 688
                 77776667899*********************************9999999988888777665 PP

>> EF-hand_5  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   0.2   2.4e-06    0.0034       1      24 [.     243     266 ..     243     267 .. 0.90
   2 ?    1.0   0.1      0.24   3.3e+02       4      25 .]     282     303 ..     281     303 .. 0.90
   3 !   15.5   0.1   6.5e-06    0.0089       3      23 ..     422     442 ..     421     444 .. 0.92
   4 !    7.4   0.1    0.0023       3.2       8      24 ..     463     479 ..     457     480 .. 0.87

  Alignments for each domain:
  == domain 1  score: 16.8 bits;  conditional E-value: 2.4e-06
                 HHHHHHHH-SS-SSCE-HHHHHHH CS
   EF-hand_5   1 lkdtFqaiDlNgDGkIskeELktl 24 
                 l++ F+++D+ gDG ++++E+ ++
  KOO24802.1 243 LREIFSMLDTSGDGVLDMDEFLAM 266
                 6789*****************876 PP

  == domain 2  score: 1.0 bits;  conditional E-value: 0.24
                 HHHHH-SS-SSCE-HHHHHHHH CS
   EF-hand_5   4 tFqaiDlNgDGkIskeELktlv 25 
                 +F  +D ++ G+++  E+ ++v
  KOO24802.1 282 LFALVDNDRGGTVDGAEFVQFV 303
                 59999*************9986 PP

  == domain 3  score: 15.5 bits;  conditional E-value: 6.5e-06
                 HHHHHH-SS-SSCE-HHHHHH CS
   EF-hand_5   3 dtFqaiDlNgDGkIskeELkt 23 
                 ++F+ +D ++DG I++ E+++
  KOO24802.1 422 KLFRIFDRDNDGGIDPYEFRE 442
                 68*****************97 PP

  == domain 4  score: 7.4 bits;  conditional E-value: 0.0023
                 H-SS-SSCE-HHHHHHH CS
   EF-hand_5   8 iDlNgDGkIskeELktl 24 
                 +D ++DG++++ E+ +l
  KOO24802.1 463 ADEDNDGTLNVAEFTQL 479
                 79************886 PP

>> Roc  Ras of Complex, Roc, domain of DAPkinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.9   0.0   5.7e-08   7.8e-05       2     107 ..     529     627 ..     528     642 .. 0.80

  Alignments for each domain:
  == domain 1  score: 22.9 bits;  conditional E-value: 5.7e-08
                 EEEESSTTSSHHHHHHCHCT-CCC-EEETTTTEEEEEEECGGSGGCTTBTTTTCEEEEEEEE-SGGCTTTT-HHHHCTSCEEEEEEEGHHH...HCHHH CS
         Roc   2 vvlvGdsgvGKtsllkrfvedkfsekekstigvdfltkevtkikgvendkkvkkvklniWDtaGqerfrslhplylreaalailvydsrss...enlke 97 
                 ++++G s++GKt  l++++edk  +  +  +gv  +  ++    +        +v +++ D+ G  r+  l +l++ +   +il++d++s+   e l++
  KOO24802.1 529 LLIMGSSKSGKTYVLNQVLEDKLPKGCTVSVGVGGIVLRL---GQ-------FSVAVQVIDIPGDPRYAPLGTLFYAATPYVILMFDATSFesfEALQP 617
                 789***********************99999999987665...22.......2589*******************************887612245666 PP

                 HHHHHHHHCS CS
         Roc  98 Wlkelkkvag 107
                  l+ +++ ++
  KOO24802.1 618 LLDAFRRANP 627
                 7766666554 PP

>> EF-hand_10  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.6   0.0     0.044        60      24      43 ..     244     263 ..     239     269 .. 0.87
   2 ?    3.0   0.0     0.068        94      26      48 ..     282     304 ..     280     305 .. 0.91
   3 ?    4.1   0.1      0.03        42       6      48 ..     403     445 ..     398     447 .. 0.77
   4 ?    5.5   0.0     0.011        15      23      48 ..     456     481 ..     452     483 .. 0.88

  Alignments for each domain:
  == domain 1  score: 3.6 bits;  conditional E-value: 0.044
  EF-hand_10  24 ekLFkkcDkSksgrLegeEi 43 
                 +++F   D+S +g L+  E+
  KOO24802.1 244 REIFSMLDTSGDGVLDMDEF 263
                 789*************9997 PP

  == domain 2  score: 3.0 bits;  conditional E-value: 0.068
  EF-hand_10  26 LFkkcDkSksgrLegeEieeFyk 48 
                 LF   D+ + g+ +g E+++F +
  KOO24802.1 282 LFALVDNDRGGTVDGAEFVQFVR 304
                 899999***************98 PP

  == domain 3  score: 4.1 bits;  conditional E-value: 0.03
  EF-hand_10   6 EvkrlLreiNievdd.eYAekLFkkcDkSksgrLegeEieeFyk 48 
                 E+ +  r + +   d +YA kLF+  D+ ++g ++  E+ e + 
  KOO24802.1 403 EIHTVVRTLFVSHTDaDYA-KLFRIFDRDNDGGIDPYEFREICS 445
                 6666666666655441677.7*****************999886 PP

  == domain 4  score: 5.5 bits;  conditional E-value: 0.011
  EF-hand_10  23 AekLFkkcDkSksgrLegeEieeFyk 48 
                 A++LF  +D+ ++g+L+  E+ +  k
  KOO24802.1 456 ARELFVGADEDNDGTLNVAEFTQLIK 481
                 99******************987665 PP

>> EF-hand_4  Cytoskeletal-regulatory complex EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.5   0.1   0.00068      0.93      40      73 ..     238     271 ..     234     279 .. 0.88
   2 ?    0.7   0.0      0.37   5.1e+02      40      69 ..     274     303 ..     270     306 .. 0.87
   3 ?    1.3   0.0      0.24   3.2e+02      41      66 ..     416     441 ..     389     453 .. 0.71
   4 ?    1.1   0.0      0.27   3.8e+02      48      70 ..     459     481 ..     450     493 .. 0.81

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 0.00068
   EF-hand_4  40 leedklekiwdladidedgkldfeefciamrlif 73 
                  +e+ l +i+++ d   dg ld++ef  ++++i 
  KOO24802.1 238 QSEEALREIFSMLDTSGDGVLDMDEFLAMLQIIG 271
                 57889**********************9999985 PP

  == domain 2  score: 0.7 bits;  conditional E-value: 0.37
   EF-hand_4  40 leedklekiwdladidedgkldfeefciam 69 
                 l+   l +++ l d d  g++d  ef+  +
  KOO24802.1 274 LPAAVLPRLFALVDNDRGGTVDGAEFVQFV 303
                 7788999*******************8655 PP

  == domain 3  score: 1.3 bits;  conditional E-value: 0.24
   EF-hand_4  41 eedklekiwdladidedgkldfeefc 66 
                 ++   +k++ + d d+dg +d  ef 
  KOO24802.1 416 TDADYAKLFRIFDRDNDGGIDPYEFR 441
                 4566899*************988875 PP

  == domain 4  score: 1.1 bits;  conditional E-value: 0.27
   EF-hand_4  48 iwdladidedgkldfeefciamr 70 
                 ++  ad d+dg+l+  ef+  ++
  KOO24802.1 459 LFVGADEDNDGTLNVAEFTQLIK 481
                 5666999***********86655 PP

>> Arf  ADP-ribosylation factor family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.4   0.0   1.4e-05     0.019      12     106 ..     524     621 ..     519     658 .. 0.86

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 1.4e-05
                 TTEEEEEEEESTTSSHHHHHHHHHHSSCEE...CSSSSSEEEEEEEETTEEEEEEEE-SSGGGGGGGGGGCTTESEEEEEEETT-CTTHHHHHHHHHH CS
         Arf  12 kkelrilllGLDnaGKtTilkklkleelvt...tvPTigfnveeleiknlkftvwDvGGqeklRplWknYfektdavifvvDsadreRleeakeeLka 106
                 +  +++l++G  ++GKt +l+++ +++l +   ++  +g  v +l    + ++v D+ G  +  pl   ++++t  vi + D++  e +e  +  L+a
  KOO24802.1 524 DAMMQLLIMGSSKSGKTYVLNQVLEDKLPKgctVSVGVGGIVLRLGQFSVAVQVIDIPGDPRYAPLGTLFYAATPYVILMFDATSFESFEALQPLLDA 621
                 56799******************9999976543556677778888889999*********************************99999887766665 PP

>> SRPRB  Signal recognition particle receptor beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.0   2.1e-05     0.028       5      61 ..     528     585 ..     524     596 .. 0.87

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 2.1e-05
                 EEEEE-STTSSHHHHHHHHHHSS---.B---S.S-EEETTG...GGTT-SEEEETT-GC CS
       SRPRB   5 avllvGlsdsGKTslftrLttdsvkk.tvtSq.essaalkvksekgskltliDfPGhek 61 
                 ++l++G s+sGKT +++++++d+  k   +S+    ++l++ ++    +++iD+PG+ +
  KOO24802.1 528 QLLIMGSSKSGKTYVLNQVLEDKLPKgCTVSVgVGGIVLRL-GQFSVAVQVIDIPGDPR 585
                 689******************98766256688899999999.999999********866 PP

>> TniB  Bacterial TniB protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.2   0.0     0.001       1.4      32      61 ..     523     552 ..     492     566 .. 0.80
   2 ?   -1.0   0.1      0.69   9.6e+02     108     162 ..     758     813 ..     748     819 .. 0.85

  Alignments for each domain:
  == domain 1  score: 8.2 bits;  conditional E-value: 0.001
        TniB  32 rkrmpnlllvGdsnnGKtmivekFarlhpp 61 
                 ++ m +ll++G s+ GKt ++++  +++ p
  KOO24802.1 523 ADAMMQLLIMGSSKSGKTYVLNQVLEDKLP 552
                 67899****************998877755 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 0.69
        TniB 108 eqqvlrllrelkvrvLiiDEihnllagsarkqreflnalk.sLgnelkipivlvGt 162
                 ++++++ll+++  +  ++ E +++ ag+  +  e  ++l   L n+ + pi++ G 
  KOO24802.1 758 TDETMSLLETMCKEADVLGEAKKMFAGEKINATEKRAVLHvALRNRANTPIIVDGA 813
                 5678899999999999999********99999999999984699999999998876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1605 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       511  (0.0285013); expected 358.6 (0.02)
Passed bias filter:                      490  (0.02733); expected 358.6 (0.02)
Passed Vit filter:                        60  (0.00334653); expected 17.9 (0.001)
Passed Fwd filter:                        13  (0.000725082); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 0.96u 0.31s 00:00:01.27 Elapsed: 00:00:00.50
# Mc/sec: 9626.31
//
Query:       KOO24803.1  [L=566]
Description: RNA-binding protein 28 isoform 1 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    5.3e-56  186.3   0.0    9.6e-22   76.6   0.0    5.4  5  RRM_1         RNA recognition motif. (a.k.a. RRM, RBD, or RNP
      0.003   17.2   0.0       0.24   11.0   0.0    2.4  2  RRM_5         RNA recognition motif. (a.k.a. RRM, RBD, or RNP
     0.0091   16.1   0.3       0.21   11.7   0.0    3.0  4  Limkain-b1    Limkain b1
  ------ inclusion threshold ------
      0.019   15.2   0.0        2.5    8.3   0.0    3.3  3  PHM7_cyt      Cytosolic domain of 10TM putative phosphate tra
      0.044   13.6   0.0         14    5.6   0.0    3.8  4  RRM_occluded  Occluded RNA-recognition motif
      0.085   12.9   0.0        1.6    8.8   0.0    2.4  2  DbpA          DbpA RNA binding domain
       0.16   12.1   0.0        2.9    8.1   0.0    2.8  3  RRM_7         RNA recognition motif


Domain annotation for each model (and alignments):
>> RRM_1  RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   76.6   0.0   3.7e-25   9.6e-22       1      69 [.      26      95 ..      26      96 .. 0.98
   2 !   53.1   0.0   8.3e-18   2.1e-14       1      69 [.     163     231 ..     163     232 .. 0.97
   3 !   26.4   0.0   1.8e-09   4.6e-06       9      57 ..     259     308 ..     257     314 .. 0.92
   4 !    6.6   0.0    0.0027       6.9       2      18 ..     406     422 ..     405     426 .. 0.90
   5 !   16.8   0.0   1.8e-06    0.0046      37      59 ..     458     480 ..     437     483 .. 0.81

  Alignments for each domain:
  == domain 1  score: 76.6 bits;  conditional E-value: 3.7e-25
                EEEESETTTSSHHHHHHHHHTTSCEEEEEEEEE.TTTSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEE CS
       RRM_1  1 lfVgnLppdvteeeLkelFskfGpiksiklvrd.etgkskgfafVeFeskedAekAlealngkklggrel 69
                +fV+nLp+d+t+e L+++Fs++Gp++++ +v+d +t+ s+gf+fV F   + A++A+++lngk+++gr+l
  KOO24803.1 26 VFVRNLPYDATNEALETHFSEVGPVRRAFIVCDkATKVSRGFGFVSFVLADVAQRAVASLNGKEFKGRRL 95
                8*******************************************************************98 PP

  == domain 2  score: 53.1 bits;  conditional E-value: 8.3e-18
                 EEEESETTTSSHHHHHHHHHTTSCEEEEEEEEETTTSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEE CS
       RRM_1   1 lfVgnLppdvteeeLkelFskfGpiksiklvrdetgkskgfafVeFeskedAekAlealngkklggrel 69 
                 l+V+nL++ ++e  L+  F++ G + ++ ++ +++gk+ gf+fV++ s+ + ++A++aln++k+ gr++
  KOO24803.1 163 LIVRNLSFRCDEAALRNAFEPHGTVAEVHVPMKADGKHSGFGFVQMSSQAECDAAVAALNETKIVGRVV 231
                 78**************************************************************99975 PP

  == domain 3  score: 26.4 bits;  conditional E-value: 1.8e-09
                 TSSHHHHHHHHHTTSCEEEEEEEEE.TTTSEEEEEEEEESSHHHHHHHHH CS
       RRM_1   9 dvteeeLkelFskfGpiksiklvrd.etgkskgfafVeFeskedAekAle 57 
                 ++te +++ l++ +Gp + +++vrd +t+ s+g+af  F+++++  +Al 
  KOO24803.1 259 TATEVQIRSLLERYGPLRYVTVVRDpATKLSRGTAFACFTDPRAVLEALL 308
                 6899***************************************9999985 PP

  == domain 4  score: 6.6 bits;  conditional E-value: 0.0027
                 EEESETTTSSHHHHHHH CS
       RRM_1   2 fVgnLppdvteeeLkel 18 
                  V+nLp++v+e +L++l
  KOO24803.1 406 SVRNLPTTVDEAQLRKL 422
                 69*************98 PP

  == domain 5  score: 16.8 bits;  conditional E-value: 1.8e-06
                 SEEEEEEEEESSHHHHHHHHHHH CS
       RRM_1  37 kskgfafVeFeskedAekAleal 59 
                 +s+gf+fV Fes+  A +Al al
  KOO24803.1 458 RSRGFGFVHFESHAHALAALHAL 480
                 79******************987 PP

>> RRM_5  RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.7   0.0     0.017        44      64     100 ..      65     101 ..      12     115 .. 0.72
   2 !   11.0   0.0   9.3e-05      0.24      63     100 ..     200     237 ..     136     255 .. 0.75

  Alignments for each domain:
  == domain 1  score: 3.7 bits;  conditional E-value: 0.017
       RRM_5  64 ketalvqmgdasaveravqHLnnaklfgkrlevalSK 100
                 ++  +v    a  ++rav  Ln+++  g+rl +   K
  KOO24803.1  65 RGFGFVSFVLADVAQRAVASLNGKEFKGRRLSIDGAK 101
                 45567777778889*****************997666 PP

  == domain 2  score: 11.0 bits;  conditional E-value: 9.3e-05
       RRM_5  63 kketalvqmgdasaveravqHLnnaklfgkrlevalSK 100
                   +  +vqm+++ + + av  Ln++k+ g+ + v +S 
  KOO24803.1 200 HSGFGFVQMSSQAECDAAVAALNETKIVGRVVAVDFSL 237
                 456789**************************999995 PP

>> Limkain-b1  Limkain b1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.7   0.0   8.1e-05      0.21       5      75 ..      26      99 ..      23     108 .. 0.75
   2 ?   -2.6   0.0       2.3     6e+03       5      22 ..     163     178 ..     161     182 .. 0.64
   3 ?   -3.7   0.0       5.3   1.4e+04      46      76 ..     206     236 ..     203     246 .. 0.69
   4 ?    0.3   0.0       0.3   7.7e+02       5      16 ..     405     416 ..     401     423 .. 0.79

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 8.1e-05
  Limkain-b1  5 lvvsnLPtnrdk..lkkaikn..rLrrLsdncGGkvlsisgksavlrfanqeaaeralkrleneDvfGnritvse 75
                ++v+nLP +     l+   ++   +rr +  c  k  ++s +   ++f   ++a+ra+  l++ +  G r+++  
  KOO24803.1 26 VFVRNLPYDATNeaLETHFSEvgPVRRAFIVC-DKATKVSRGFGFVSFVLADVAQRAVASLNGKEFKGRRLSIDG 99
                89999997655222333333211466777666.6999***********************************974 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 2.3
  Limkain-b1   5 lvvsnLPtnrdklkkaik 22 
                 l+v+nL   +d  + a++
  KOO24803.1 163 LIVRNLSFRCD--EAALR 178
                 56777777777..44444 PP

  == domain 3  score: -3.7 bits;  conditional E-value: 5.3
  Limkain-b1  46 lrfanqeaaeralkrleneDvfGnritvsek 76 
                 +++++q   + a+  l++  + G  ++v ++
  KOO24803.1 206 VQMSSQAECDAAVAALNETKIVGRVVAVDFS 236
                 5667777777777778888888887777766 PP

  == domain 4  score: 0.3 bits;  conditional E-value: 0.3
  Limkain-b1   5 lvvsnLPtnrdk 16 
                 l v+nLPt  d 
  KOO24803.1 405 LSVRNLPTTVDE 416
                 789*****9995 PP

>> PHM7_cyt  Cytosolic domain of 10TM putative phosphate transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.3   0.0   0.00096       2.5       2      40 ..      24      59 ..      23      81 .. 0.83
   2 ?   -1.3   0.1      0.86   2.2e+03     117     140 ..     196     219 ..     191     254 .. 0.78
   3 ?    2.5   0.0     0.058   1.5e+02     120     166 ..     458     498 ..     436     501 .. 0.64

  Alignments for each domain:
  == domain 1  score: 8.3 bits;  conditional E-value: 0.00096
    PHM7_cyt  2 rTvlvtgiPkelrseeklkeffeelypgkvvesvqivrd 40
                 Tv+v+++P + + +e+l+++f+e+ p    +   ++ +
  KOO24803.1 24 ATVFVRNLPYDAT-NEALETHFSEVGPVR--RAFIVCDK 59
                59***********.778*******99865..34555555 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 0.86
    PHM7_cyt 117 vkkkplgaaFvtfesersaaavak 140
                 ++ k +g +Fv+++s+ + +a+++
  KOO24803.1 196 ADGKHSGFGFVQMSSQAECDAAVA 219
                 466889999****99998888764 PP

  == domain 3  score: 2.5 bits;  conditional E-value: 0.058
    PHM7_cyt 120 kplgaaFvtfesersaaavakqakcaaqiqqssnptl..kpkkwtvelA 166
                 + +g +Fv fes   a+a a+     +++  s np++  +++++ ve+A
  KOO24803.1 458 RSRGFGFVHFESH--AHALAA-----LHA-LSDNPNVlpERRRMLVEFA 498
                 45789*****975..555531.....222.3566666677788888877 PP

>> RRM_occluded  Occluded RNA-recognition motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.6   0.0    0.0055        14      42      70 ..      69      97 ..      24     101 .. 0.81
   2 ?   -2.3   0.0       1.6   4.2e+03      42      60 ..     205     223 ..     165     232 .. 0.48
   3 ?    1.2   0.0      0.13   3.3e+02      12      37 ..     259     283 ..     256     287 .. 0.85
   4 ?    0.9   0.0      0.16   4.1e+02       4      23 ..     405     424 ..     404     441 .. 0.89

  Alignments for each domain:
  == domain 1  score: 5.6 bits;  conditional E-value: 0.0055
  RRM_occluded 42 ivefkdekiagkasLaLdgsefegkklrc 70
                  +v f  +  a +a+ +L+g+ef+g++l++
    KOO24803.1 69 FVSFVLADVAQRAVASLNGKEFKGRRLSI 97
                  577888888999999**********9976 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 1.6
  RRM_occluded  42 ivefkdekiagkasLaLdg 60 
                   +v++++++    a+ aL+ 
    KOO24803.1 205 FVQMSSQAECDAAVAALNE 223
                   3444444433334444444 PP

  == domain 3  score: 1.2 bits;  conditional E-value: 0.13
  RRM_occluded  12 tvnkariralveekegeikkivLvpd 37 
                   t ++ +ir+l+e + g+++ + +v d
    KOO24803.1 259 TATEVQIRSLLERY-GPLRYVTVVRD 283
                   56788*********.***99988765 PP

  == domain 4  score: 0.9 bits;  conditional E-value: 0.16
  RRM_occluded   4 isllplsDtvnkariralve 23 
                   +s+ +l+ tv +a++r+l  
    KOO24803.1 405 LSVRNLPTTVDEAQLRKLAY 424
                   6899************9975 PP

>> DbpA  DbpA RNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.8   0.0   0.00061       1.6      46      70 ..      73      97 ..      62      98 .. 0.89
   2 ?    1.0   0.0      0.16   4.1e+02      49      70 ..     212     233 ..     201     234 .. 0.82

  Alignments for each domain:
  == domain 1  score: 8.8 bits;  conditional E-value: 0.00061
                E-TT-HHHHHHHHTT--SSS----E CS
        DbpA 46 vpkekaeevlkalkkkkikGrkvrv 70
                v +++a++++++l++k++kGr++ +
  KOO24803.1 73 VLADVAQRAVASLNGKEFKGRRLSI 97
                7899******************987 PP

  == domain 2  score: 1.0 bits;  conditional E-value: 0.16
                 T-HHHHHHHHTT--SSS----E CS
        DbpA  49 ekaeevlkalkkkkikGrkvrv 70 
                 ++ + +++al+++ki Gr v v
  KOO24803.1 212 AECDAAVAALNETKIVGRVVAV 233
                 567899***********98876 PP

>> RRM_7  RNA recognition motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.1   0.0    0.0011       2.9       3      29 ..      25      51 ..      23      85 .. 0.85
   2 ?    0.0   0.0      0.36   9.2e+02      13      37 ..     172     197 ..     162     217 .. 0.78
   3 ?   -3.3   0.0         4     1e+04      47      63 ..     287     303 ..     261     315 .. 0.60

  Alignments for each domain:
  == domain 1  score: 8.1 bits;  conditional E-value: 0.0011
       RRM_7  3 kvFvGGlPiDiteeelkatfkefgkvl 29
                 vFv  lP D t+e+l++ f+e g+v+
  KOO24803.1 25 TVFVRNLPYDATNEALETHFSEVGPVR 51
                69**********************997 PP

  == domain 2  score: 0.0 bits;  conditional E-value: 0.36
       RRM_7  13 iteeelkatfkefgkvl.vdwPkkae 37 
                  +e++l ++f+ +g+v+ v  P ka 
  KOO24803.1 172 CDEAALRNAFEPHGTVAeVHVPMKAD 197
                 6899**********984488888854 PP

  == domain 3  score: -3.3 bits;  conditional E-value: 4
       RRM_7  47 kaakgyvflvfedeksv 63 
                 k  +g +f  f+d ++v
  KOO24803.1 287 KLSRGTAFACFTDPRAV 303
                 33456677777777766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (566 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       503  (0.0280551); expected 358.6 (0.02)
Passed bias filter:                      318  (0.0177366); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.53u 0.25s 00:00:00.78 Elapsed: 00:00:00.41
# Mc/sec: 4137.40
//
Query:       KOO24804.1  [L=181]
Description: hypothetical protein Ctob_005961 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.031   13.9   0.4      0.047   13.3   0.4    1.2  1  PP2C      Protein phosphatase 2C
       0.13   12.3   1.3       0.35   10.9   0.0    2.5  3  SapB_1    Saposin-like type B, region 1


Domain annotation for each model (and alignments):
>> PP2C  Protein phosphatase 2C
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.4   5.2e-06     0.047     211     251 ..      75     115 ..      68     118 .. 0.94

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 5.2e-06
                 E-HHHHTTSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHH CS
        PP2C 211 acdGlwdvlsdqeavdlvrdelekkkspeevaeelvdeaia 251
                 acd + ++++ +e+v+l r++ ++++++++v++++++ +++
  KOO24804.1  75 ACDQVMEKVDADELVELLREKKSAGTTAQRVCTKMANVCKK 115
                 9***********************************99975 PP

>> SapB_1  Saposin-like type B, region 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   3.9e-05      0.35      11      35 ..       3      27 ..       1      28 [. 0.79
   2 ?   -2.4   0.1      0.58   5.2e+03       5      13 ..      75      83 ..      74      85 .. 0.63
   3 ?   -3.2   0.0         1     9e+03      32      37 ..     104     109 ..     102     109 .. 0.76

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 3.9e-05
                HHHHHHH-SS--HHHHHHHHHHHHH CS
      SapB_1 11 keveklLkdNkTeeeIieaLekvCs 35
                +e+ k     +T++ ++++Lek+C+
  KOO24804.1  3 HEAVKRAAAMSTQSAVEDMLEKICD 27
                55555556669*************8 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 0.58
                HHHHHHHHH CS
      SapB_1  5 lCefvVkev 13
                +C +v+ +v
  KOO24804.1 75 ACDQVMEKV 83
                476777666 PP

  == domain 3  score: -3.2 bits;  conditional E-value: 1
                 HHHHHS CS
      SapB_1  32 kvCskL 37 
                  vC+k+
  KOO24804.1 104 RVCTKM 109
                 689887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (181 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       701  (0.0390987); expected 358.6 (0.02)
Passed bias filter:                      507  (0.0282782); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.42u 0.25s 00:00:00.67 Elapsed: 00:00:00.41
# Mc/sec: 1321.12
//
Query:       KOO24805.1  [L=152]
Description: mitochondrial substrate carrier family protein b-like protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.7e-38  129.3   0.1    1.5e-25   88.9   0.0    2.0  2  Mito_carr  Mitochondrial carrier protein


Domain annotation for each model (and alignments):
>> Mito_carr  Mitochondrial carrier protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.7   0.0   3.9e-14     7e-10      54      93 ..       3      42 ..       1      46 [. 0.94
   2 !   88.9   0.0   8.4e-30   1.5e-25       8      94 ..      58     144 ..      52     146 .. 0.95

  Alignments for each domain:
  == domain 1  score: 38.7 bits;  conditional E-value: 3.9e-14
                HHHHHHHHHGGGTTHHHHHHHHHHHHHHHHHHHHHHHHHH CS
   Mito_carr 54 kiykeeGlrglyrGllpnllrvapasalkfvlyetlkrll 93
                +i+++eG ++lyrG++p++l+  p+ ++kf++y++lkr+ 
  KOO24805.1  3 TIVRTEGASALYRGATPTVLGALPYEGIKFGTYDVLKRHT 42
                79***********************************975 PP

  == domain 2  score: 88.9 bits;  conditional E-value: 8.4e-30
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSTTTSCSSHHHHHHHHHHHHHHHGGGTTHHHHHHHHHHHHHHHHHHHHHHHHHHC CS
   Mito_carr   8 ellaGglagavatlvttPldvvKtrlqtqkksskksksaaildvlkkiykeeGlrglyrGllpnllrvapasalkfvlyetlkrlll 94 
                 +  +G++a+++a+ +t+P d+++ rlq+q+ +++  ++++ +d++++i+k eG  +lyrGl+++++r++p+++++f++ye +k++++
  KOO24805.1  58 RASCGAFAAMLAHALTYPNDTIRRRLQMQGVNGEPVRYRGWMDCFRQIVKYEGWQSLYRGLGVTMVRSIPNTGIQFAVYEACKDFIF 144
                 5679*******************************************************************************9975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (152 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       294  (0.016398); expected 358.6 (0.02)
Passed bias filter:                      280  (0.0156172); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.22s 00:00:00.60 Elapsed: 00:00:00.38
# Mc/sec: 1191.13
//
Query:       KOO24806.1  [L=500]
Description: hypothetical protein Ctob_006553 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.1e-32  113.4  45.8      2e-25   89.5  25.5    2.2  2  MFS_1      Major Facilitator Superfamily
  ------ inclusion threshold ------
       0.19   12.3   0.5       0.96   10.1   0.3    2.2  3  SelK_SelG  Selenoprotein SelK_SelG


Domain annotation for each model (and alignments):
>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   89.5  25.5   2.2e-29     2e-25      13     234 ..      52     270 ..      39     273 .. 0.77
   2 !   25.6  19.4     6e-10   5.3e-06       5     187 ..     252     471 ..     234     492 .. 0.79

  Alignments for each domain:
  == domain 1  score: 89.5 bits;  conditional E-value: 2.2e-29
       MFS_1  13 silgpalplalaedlgispseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllllfasslw.lllvlrvlqGlgagalfpagaali 110
                 s+++ +l  al  d+gi++++  lll++ al  a++++++G l+d + r r++++++++++l++++ +f s+++ ll+++r l++++ g+++p+++ ++
  KOO24806.1  52 STIAGMLR-ALELDFGIDADQEALLLVISALPLAIFAPVWGLLADSYPRFRLMIVSAIFWGLTTFISAF-SQSFaLLCFSRGLTAVALGGILPISQGIV 148
                 45566666.8999**********************************7778************555559.78888************************ PP

       MFS_1 111 adwfpkeergraigllsagfslGailgpllgg.....llasslgWravfyilaivsllafvlfllllpeepperkrkspkeeekgtgpaplvp.awkal 203
                 ad++p   rgr+++ll+++ ++Ga ++ l++       ++   gWr+vf+ +ai+sl+a++++ +l +e+ ++ k+++   e         v+   +++
  KOO24806.1 149 ADLVPNVYRGRMFALLTVCGGAGAGFALLIATdisteTIYGMRGWRWVFLDIAILSLVAALFITVLAVEPVRKGKTPTLNCE--------TVNrSMSYM 239
                 ********************************766666666667***************99644444444444444433333........222224445 PP

       MFS_1 204 lkdpvlwillialllfffgfsglltllplyl 234
                  + p + +l++ + ++ + +s+++ + pl+l
  KOO24806.1 240 ANVPTFALLVLQAMFGLVPWSAFSGFGPLWL 270
                 5555443333333333445555666666665 PP

  == domain 2  score: 25.6 bits;  conditional E-value: 6e-10
       MFS_1   5 aflsalarsilgpalplalaedlgispseigllltlyalgaavaslplGrlsdrf.......Grrrvlllglllfalglllllfa.....sslw.lllv 90 
                 a++    +s+++ + pl+l +   +s ++i+l+l+++++g +++ l++G l+d         Gr rv  +++ll + + ++ lf+     + ++ ++++
  KOO24806.1 252 AMFGLVPWSAFSGFGPLWL-QYSDLSRDQISLALVCFGVGNGFGELLGGLLGDIAasyapdtGRVRVAQVSVLLGITW-VVTLFCvisdaAKSPsTVMA 348
                 4445555666777777555.4447*****************************5445566669999999999999999.44444223466888999*** PP

       MFS_1  91 lrvlqGlgagalfpag.aaliadwfpkeergraigllsagfslGa.ilgpllgglla.sslg.......................Wravfyilaivsll 163
                 l ++ Gl+++++ +++   ++a+++p     +++g++++   +++ i+g l+ g+la + +g                        +++ +++ +  ++
  KOO24806.1 349 LLFFLGLTGSWVGSGVkTPMLAEIVPSHMMVSVMGVAYGLEHASSsIFGSLVTGVLAqHVFGydtstedvahmpqaqrrsnatalSSSIGWMMVVPWII 447
                 *********9999988356********************9999999***********888889999999999999999999999988888888888888 PP

       MFS_1 164 afvlfllllpeepperkrkspkee 187
                 ++ ++ +  ++ p++r r+   ee
  KOO24806.1 448 CLFIWSAITWTYPKDRDRVLRDEE 471
                 877777777777777777666665 PP

>> SelK_SelG  Selenoprotein SelK_SelG
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.3   0.00011      0.96      14      39 ..      98     123 ..      91     131 .. 0.86
   2 ?   -4.0   0.0         2   1.8e+04      27      43 ..     201     217 ..     196     224 .. 0.75
   3 ?   -1.9   0.0      0.61   5.5e+03      28      66 ..     443     482 ..     425     487 .. 0.59

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.00011
   SelK_SelG  14 spwrlsiitdffwgivnfivlFfqtL 39 
                   +rl i++ +fwg+ +fi  F q++
  KOO24806.1  98 PRFRLMIVSAIFWGLTTFISAFSQSF 123
                 5689******************9986 PP

  == domain 2  score: -4.0 bits;  conditional E-value: 2
   SelK_SelG  27 givnfivlFfqtLlspd 43 
                 +i++++  +f t l+ +
  KOO24806.1 201 AILSLVAALFITVLAVE 217
                 57888889999988765 PP

  == domain 3  score: -1.9 bits;  conditional E-value: 0.61
   SelK_SelG  28 ivnfivlFfqtLlspdlskns.nssssskkrrgggggggg 66 
                 +  +i+lF+ + +  +  k++ +  + ++ r   +g+g+ 
  KOO24806.1 443 VPWIICLFIWSAITWTYPKDRdRVLRDEEARAAAEGEGDN 482
                 5557888888888888777773333333333344444443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (500 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       688  (0.0383736); expected 358.6 (0.02)
Passed bias filter:                      325  (0.0181271); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.55u 0.22s 00:00:00.77 Elapsed: 00:00:00.39
# Mc/sec: 3851.89
//
Query:       KOO24807.1  [L=389]
Description: hypothetical protein Ctob_006550 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (389 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       697  (0.0388756); expected 358.6 (0.02)
Passed bias filter:                      404  (0.0225333); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.45u 0.23s 00:00:00.68 Elapsed: 00:00:00.37
# Mc/sec: 3191.15
//
Query:       KOO24808.1  [L=126]
Description: hypothetical protein Ctob_006551 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (126 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1314  (0.0732891); expected 358.6 (0.02)
Passed bias filter:                      439  (0.0244855); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.41u 0.23s 00:00:00.64 Elapsed: 00:00:00.40
# Mc/sec: 943.50
//
Query:       KOO24809.1  [L=325]
Description: hypothetical protein Ctob_006556 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (325 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       544  (0.0303419); expected 358.6 (0.02)
Passed bias filter:                      308  (0.0171789); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.44u 0.26s 00:00:00.70 Elapsed: 00:00:00.43
# Mc/sec: 2264.96
//
Query:       KOO24810.1  [L=511]
Description: hypothetical protein Ctob_006557 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    8.4e-25   87.8   0.2    1.7e-20   73.8   0.0    2.2  2  DUF3431   Protein of unknown function (DUF3431)


Domain annotation for each model (and alignments):
>> DUF3431  Protein of unknown function (DUF3431)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.8   0.1   8.7e-06      0.16      34      66 ..     252     284 ..     239     294 .. 0.78
   2 !   73.8   0.0   9.3e-25   1.7e-20      40     203 ..     303     464 ..     294     472 .. 0.78

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 8.7e-06
     DUF3431  34 eltvpankGreamaYltyiidnYdsLpdvvvFv 66 
                 +l+    + + a++ l+y++d+Yd+Lp+ ++++
  KOO24810.1 252 KLRDYPRRRHAAVVLLSYLYDEYDALPRALAML 284
                 566667788******************966655 PP

  == domain 2  score: 73.8 bits;  conditional E-value: 9.3e-25
     DUF3431  40 nkGreamaYltyiidnYdsLpdvvvFvhahraawhndaldydnaallrrlrleavqeeGYvnlrckwepgCpaelk.plekeeeekkeeealaeafael 137
                 n  +   +Yl yi  +Y++Lp+ +vF+h+h+++whn   ++ +a+ lr+++l+a+ ++G v    +  ++C  + +  +e  +e      a ++ +a+ 
  KOO24810.1 303 NVFHVHAVYLRYICAFYNDLPKLSVFLHGHHTSWHNT-RSSPAAEKLRQMDLRAAAAKGDVYRSFNDFQECWRDGHgEWE--AEML----AQRHGWARE 394
                 6668889*****************************9.67779999************9888888888889876440232..1222....333334433 PP

     DUF3431 138 f..eeeevpevvaapcCaqFavsrerirkrpreeYvrlrqwllete..lddelsGrvleylWhilFgkea 203
                 +     + p+  +a cC qF vs +rir+rp++ + +l   ll+ e     ++sG vle +W +++g+ +
  KOO24810.1 395 MvgALGQPPRLKEAYCCTQFIVSADRIRRRPLSFWRQLLADLLDGEvpPVCKVSGHVLELTWGYMLGEPP 464
                 322112347777899*****************************883355799************97643 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (511 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       456  (0.0254337); expected 358.6 (0.02)
Passed bias filter:                      322  (0.0179597); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.54u 0.25s 00:00:00.79 Elapsed: 00:00:00.43
# Mc/sec: 3605.13
//
Query:       KOO24811.1  [L=968]
Description: hypothetical protein Ctob_006554 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
  ------ inclusion threshold ------
       0.32   10.9  10.1        4.6    7.1   0.4    3.6  3  FadR_C        FadR C-terminal domain
        1.4    9.3  10.9         26    5.2   0.3    3.8  3  Dynein_light  Dynein light chain type 1
        2.2    8.6   6.0         26    5.1   0.2    3.6  4  RcbX          RbcX protein
        2.9    8.3   9.7         24    5.4   0.7    3.6  3  DUF1677       Protein of unknown function (DUF1677)


Domain annotation for each model (and alignments):
>> FadR_C  FadR C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.1   0.2     0.037   1.6e+02     112     161 ..     218     271 ..     210     274 .. 0.75
   2 ?    6.1   0.4     0.002       9.1     112     160 ..     292     344 ..     289     348 .. 0.77
   3 ?    7.1   0.4     0.001       4.6     112     159 ..     371     422 ..     361     427 .. 0.79

  Alignments for each domain:
  == domain 1  score: 2.1 bits;  conditional E-value: 0.037
      FadR_C 112 eearelalkfYrelkelceeeeaekvaevvrky....gkesgkiWkelkkelpe 161
                 e+a +  l+  +elk l+++e++e+++++ ++y     ++  + Wk+l +++++
  KOO24811.1 218 EKAANSHLELLKELKDLTSKEQQEQAIDLCKDYlgkqHTDKDAAWKKLDEHIEA 271
                 4566667788899*************9999987432234556788888887765 PP

  == domain 2  score: 6.1 bits;  conditional E-value: 0.002
      FadR_C 112 eearelalkfYrelkelceeeeaekvaevvrky....gkesgkiWkelkkelp 160
                 eea +  lkf +elk+l +ee++e+++++ ++y     ++  + Wkel ++++
  KOO24811.1 292 EEAAKKHLKFLEELKKLKSEEQKEQAINLCKDYldktHTDKDAAWKELDEHIE 344
                 67788899*******************99998822213445678888877776 PP

  == domain 3  score: 7.1 bits;  conditional E-value: 0.001
      FadR_C 112 eearelalkfYrelkelceeeeaekvaevvrky....gkesgkiWkelkkel 159
                 +ea e  l+f ++lkel++ee++e+++++ +ky     ++  + Wkel +++
  KOO24811.1 371 KEAAEKHLEFLEKLKELTSEEQKEQAIDLCKKYldkqHTDKDAAWKELTEHI 422
                 67888999*******************9999983222344567788877766 PP

>> Dynein_light  Dynein light chain type 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.4   0.3      0.01        45      10      37 ..     236     261 ..     231     275 .. 0.75
   2 ?    4.2   0.5     0.012        53      10      37 ..     310     335 ..     305     347 .. 0.77
   3 ?    5.2   0.3    0.0058        26       9      34 ..     388     416 ..     382     425 .. 0.76

  Alignments for each domain:
  == domain 1  score: 4.4 bits;  conditional E-value: 0.01
                   -HHHHHHHHHHHHHHHHH-SSHH..HHH CS
  Dynein_light  10 seemqeeaielakealekfkkekekdia 37 
                   s+e qe+ai+l+k+ l k +++k  d+a
    KOO24811.1 236 SKEQQEQAIDLCKDYLGKQHTDK--DAA 261
                   7899************9966655..443 PP

  == domain 2  score: 4.2 bits;  conditional E-value: 0.012
                   -HHHHHHHHHHHHHHHHH-SSHH..HHH CS
  Dynein_light  10 seemqeeaielakealekfkkekekdia 37 
                   see +e+ai+l+k+ l+k++++k  d+a
    KOO24811.1 310 SEEQKEQAINLCKDYLDKTHTDK--DAA 335
                   6899*************977766..444 PP

  == domain 3  score: 5.2 bits;  conditional E-value: 0.0058
                   E-HHHHHHHHHHHHHHHHH-SSHH..... CS
  Dynein_light   9 mseemqeeaielakealekfkkeke...k 34 
                    see +e+ai+l+k+ l+k +++k    k
    KOO24811.1 388 TSEEQKEQAIDLCKKYLDKQHTDKDaawK 416
                   5899*************997776633444 PP

>> RcbX  RbcX protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.3   0.1      0.18   8.1e+02      63     105 ..     205     250 ..     161     255 .. 0.71
   2 ?    3.5   0.1     0.018        81      73     108 ..     289     327 ..     283     330 .. 0.69
   3 ?    5.1   0.2    0.0058        26      73     108 ..     368     406 ..     356     409 .. 0.88
   4 ?   -3.4   0.0       2.5   1.1e+04      66      85 ..     555     569 ..     544     586 .. 0.62

  Alignments for each domain:
  == domain 1  score: 0.3 bits;  conditional E-value: 0.18
                 T-HHHHHHHHHHHHHHHHHHGGGHHHH...HHHHHHHHHHHHHHHH CS
        RcbX  63 enkeLalRiltvRehlaeevleflpel...vrkgiqqaNlehrrql 105
                 e+++ a   l+ Re+ a++ le l+el   ++k+ q+  +++ +++
  KOO24811.1 205 EREKAANSHLEEREKAANSHLELLKELkdlTSKEQQEQAIDLCKDY 250
                 5555566668889*********977651115555555555555555 PP

  == domain 2  score: 3.5 bits;  conditional E-value: 0.018
                 HHHHHHHHHHGGGHHHHHH...HHHHHHHHHHHHHHHHH CS
        RcbX  73 tvRehlaeevleflpelvr...kgiqqaNlehrrqller 108
                 +vRe+ a++ l fl+el +   ++ ++  +++ +++l++
  KOO24811.1 289 KVREEAAKKHLKFLEELKKlksEEQKEQAINLCKDYLDK 327
                 7************88776511144455566666777766 PP

  == domain 3  score: 5.1 bits;  conditional E-value: 0.0058
                 HHHHHHHHHHGGG...HHHHHHHHHHHHHHHHHHHHHHH CS
        RcbX  73 tvRehlaeevlef...lpelvrkgiqqaNlehrrqller 108
                 +vR++ ae+ lef   l+el++++ ++  +++ +++l++
  KOO24811.1 368 KVRKEAAEKHLEFlekLKELTSEEQKEQAIDLCKKYLDK 406
                 79***********77778899999999999999999876 PP

  == domain 4  score: -3.4 bits;  conditional E-value: 2.5
                 HHHHHHHHHHHHHHHHHGGG CS
        RcbX  66 eLalRiltvRehlaeevlef 85 
                 +L +R l+vR+     ++++
  KOO24811.1 555 DLKVRKLKVRD-----TIDH 569
                 44455555554.....4444 PP

>> DUF1677  Protein of unknown function (DUF1677)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.6   0.4      0.04   1.8e+02      44      83 ..     208     247 ..     189     253 .. 0.78
   2 ?    4.5   0.1      0.01        45      49      84 ..     287     322 ..     271     327 .. 0.82
   3 ?    5.4   0.7    0.0054        24      41      86 ..     357     403 ..     353     406 .. 0.74

  Alignments for each domain:
  == domain 1  score: 2.6 bits;  conditional E-value: 0.04
     DUF1677  44 lerskkkisveeAlkahmafckkfksstranpalslieam 83 
                  + +++ ++ e+A ++h ++ k++k  t+++++++ i+  
  KOO24811.1 208 KAANSHLEEREKAANSHLELLKELKDLTSKEQQEQAIDLC 247
                 223567788999*************999999988888765 PP

  == domain 2  score: 4.5 bits;  conditional E-value: 0.01
     DUF1677  49 kkisveeAlkahmafckkfksstranpalslieamr 84 
                 k++  eeA k+h +f +++k+ ++++++++ i+  +
  KOO24811.1 287 KAKVREEAAKKHLKFLEELKKLKSEEQKEQAINLCK 322
                 556679***************999999988887655 PP

  == domain 3  score: 5.4 bits;  conditional E-value: 0.0054
     DUF1677  41 keeler.skkkisveeAlkahmafckkfksstranpalslieamrel 86 
                 +   ++ ++k++  +eA ++h +f +k+k+ t+++++++ i+  ++ 
  KOO24811.1 357 QSTSKQtREKAKVRKEAAEKHLEFLEKLKELTSEEQKEQAIDLCKKY 403
                 555444234555668999**************999999998877665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (968 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2170  (0.121033); expected 358.6 (0.02)
Passed bias filter:                      557  (0.031067); expected 358.6 (0.02)
Passed Vit filter:                        63  (0.00351386); expected 17.9 (0.001)
Passed Fwd filter:                        24  (0.00133861); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.98u 0.30s 00:00:01.28 Elapsed: 00:00:00.45
# Mc/sec: 6395.71
//
Query:       KOO24812.1  [L=318]
Description: putative palmitoyltransferase zdhhc12 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.1e-28   99.9   1.0    4.3e-28   98.1   0.8    1.9  2  DHHC      DHHC palmitoyltransferase


Domain annotation for each model (and alignments):
>> DHHC  DHHC palmitoyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.0      0.11   1.9e+03      95     128 ..      61     100 ..      39     105 .. 0.56
   2 !   98.1   0.8   2.4e-32   4.3e-28       7     132 ..     132     252 ..     128     254 .. 0.84

  Alignments for each domain:
  == domain 1  score: -1.1 bits;  conditional E-value: 0.11
        DHHC  95 lsilllvlsllfllllgllllf.......hlylilrnlTti 128
                   ++++ + ++ +lll l           +l+ +l ++Tt 
  KOO24812.1  61 ARLTWIGFHAFGMLLLYLSG-NlplwpegQLFWTLAGMTTV 100
                 44555555544444433322.23555777777777777765 PP

  == domain 2  score: 98.1 bits;  conditional E-value: 2.4e-32
        DHHC   7 fCstcniykpprskHcrvCnrcvlrfDHhCpwlnnciGerNykyFllfllylllllilalvlllialvklveeekkseflavtllkkllsilllvlsll 105
                  C  c+  + pr+kHc  C+rcv r DHhC w++nc+G  N+++Fl++l++ ++l++ + v+   + ++  +         v+ l+ l+s+ ++ +s +
  KOO24812.1 132 QCTLCQAGQLPRAKHCYDCGRCVNRLDHHCWWVGNCVGVGNHRVFLCYLVCQATLICSFGVFVARGAYTSPTPLG-----PVPVLSGLGSVGCVGMSSV 225
                 69*******************************************999988877776666655555544444333.....3444455679********* PP

        DHHC 106 fllllgllllfhlylilrnlTtieamk 132
                 ++ll ++lllf++ li+r+ Tt+e+++
  KOO24812.1 226 LGLLSVSLLLFQCGLIARGETTWEHLR 252
                 ************************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (318 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       495  (0.0276089); expected 358.6 (0.02)
Passed bias filter:                      302  (0.0168442); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.26s 00:00:00.67 Elapsed: 00:00:00.40
# Mc/sec: 2410.06
//
Query:       KOO24813.1  [L=970]
Description: nucleosome binding protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.9e-21   76.3   3.3    1.9e-21   76.3   3.3    3.3  3  HMG_box    HMG (high mobility group) box
    1.2e-14   54.6   2.0    1.2e-14   54.6   2.0    3.3  2  HMG_box_2  HMG-box domain
      1e-09   38.3   0.0    2.9e-09   36.8   0.0    1.9  1  Med26      TFIIS helical bundle-like domain
    1.2e-09   38.4   0.1    1.2e-09   38.4   0.1    3.9  2  PWWP       PWWP domain
    4.2e-08   33.0   0.1    1.3e-07   31.4   0.0    2.0  2  DEK_C      DEK C terminal domain


Domain annotation for each model (and alignments):
>> HMG_box  HMG (high mobility group) box
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   76.3   3.3   5.2e-25   1.9e-21       1      69 []     520     588 ..     520     588 .. 0.99
   2 ?   -7.3   6.0         5   1.8e+04      50      50 ..     805     805 ..     773     834 .. 0.59
   3 ?   -3.3   0.0       3.5   1.2e+04      33      43 ..     955     965 ..     954     967 .. 0.83

  Alignments for each domain:
  == domain 1  score: 76.3 bits;  conditional E-value: 5.2e-25
                 --SS--HHHHHHHHHHHHHHHHSTTS-HHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
     HMG_box   1 pkRplsafflfskeqraklkaenPelknaeiskklgekWkalseeeKkkYeekaekekaryekekpeyk 69 
                 pkRp +a+++f+   ra +kae+P++   ++sk+++e Wka+ e+++k+Ye++a+++karye+e +++k
  KOO24813.1 520 PKRPANAYMHFMASRRAAVKAEHPTADMGAVSKIVSELWKAMDEDARKPYEQEAAEDKARYERELAAFK 588
                 8***************************************************************99987 PP

  == domain 2  score: -7.3 bits;  conditional E-value: 5
                 H CS
     HMG_box  50 Y 50 
                  
  KOO24813.1 805 A 805
                 1 PP

  == domain 3  score: -3.3 bits;  conditional E-value: 3.5
                 HHHHHHHHHSH CS
     HMG_box  33 kklgekWkals 43 
                 k+l ++Wkal 
  KOO24813.1 955 KMLVDRWKALA 965
                 89999***996 PP

>> HMG_box_2  HMG-box domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.6   2.0   3.4e-18   1.2e-14       4      69 ..     520     584 ..     517     587 .. 0.97
   2 ?   -9.5   9.4         5   1.8e+04      45      64 ..     796     815 ..     778     837 .. 0.51

  Alignments for each domain:
  == domain 1  score: 54.6 bits;  conditional E-value: 3.4e-18
                 .-SS--HHHHHHHTTHHHHHHHT---SSHHHHTGGGHHHHHHS-HHHHHHHHHHHHHHHHHHHH-S CS
   HMG_box_2   4 pkaarnAYalfvqemipelkrkGnpviglaevsklcsekWkalseeeKekYeekAkedkkrydrea 69 
                 pk++ nAY+ f+  +++ +k++  p++ ++ vsk +se Wka+ e+ +++Ye++A edk+ry+re 
  KOO24813.1 520 PKRPANAYMHFMASRRAAVKAE-HPTADMGAVSKIVSELWKAMDEDARKPYEQEAAEDKARYEREL 584
                 9*********************.*****************************************95 PP

  == domain 2  score: -9.5 bits;  conditional E-value: 5
                 HS-HHHHHHHHHHHHHHHHH CS
   HMG_box_2  45 alseeeKekYeekAkedkkr 64 
                  l+ ++Ke  e++A + k++
  KOO24813.1 796 KLKMAQKEVAEREAAAEKAA 815
                 33334444333333333333 PP

>> Med26  TFIIS helical bundle-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.8   0.0   8.1e-13   2.9e-09       2      52 ..     917     964 ..     916     965 .. 0.93

  Alignments for each domain:
  == domain 1  score: 36.8 bits;  conditional E-value: 8.1e-13
                 HHHHS---....HHHHHHSHHHHHHHHHH-TTS-HHHHHHHHHHHHHHHHH CS
       Med26   2 iLaqLeklpittetLkstgIGkvVnalrkhkhetaevktlAksLvekWkka 52 
                 +La+Le +p+t+ +L  +g Gk+Vna++k    + +++ +Ak Lv++Wk++
  KOO24813.1 917 ALAELEVMPMTLALLAASGAGKAVNAIKK--G-ETSLAPRAKMLVDRWKAL 964
                 69*************************55..5.88**************86 PP

>> PWWP  PWWP domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.4   0.1   3.4e-13   1.2e-09       4      94 ..     120     208 ..     118     210 .. 0.85
   2 ?  -13.2  14.2         5   1.8e+04      95      95 ..     777     777 ..     717     868 .. 0.63

  Alignments for each domain:
  == domain 1  score: 38.4 bits;  conditional E-value: 3.4e-13
                 TEEEEEEESSSEEEEEEEEECCCCCCCCHCT---SSSEEEEEETTTTEEEEE-GGGEEE-SHHHHHHHHHTTSS-HHHH.....HHHHHHHHHHHH CS
        PWWP   4 gdlvwakvkgypwWPavvidpeevpekvlkkkekskelylVkFfgdkeyawvkekdlkpfteedeeeylkkkkkkkskk.....kfkkAleeaeea 94 
                 g++ wak+ gy +WPa+v  +e  p+++ + +    ++ +V++fg++++a++  ++ +++ e++ e++lk+ +  ++kk      fk ++eeae++
  KOO24813.1 120 GTVLWAKQVGYVYWPAIVAREERGPDRHMRDG----GWTFVRYFGTNQFAYC--NRTMSWAEGK-EKCLKEAEVAHKKKpasvrGFKLGVEEAEAE 208
                 89*********************999887644....58*******9999999..5569**9999.6677777777766779999********9976 PP

  == domain 2  score: -13.2 bits;  conditional E-value: 5
                 H CS
        PWWP  95 l 95 
                 +
  KOO24813.1 777 A 777
                 1 PP

>> DEK_C  DEK C terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.4   0.0   3.7e-11   1.3e-07       1      53 [.       6      60 ..       6      61 .. 0.92
   2 ?   -3.0   0.1       2.1   7.4e+03      35      50 ..     639     653 ..     632     655 .. 0.69

  Alignments for each domain:
  == domain 1  score: 31.4 bits;  conditional E-value: 3.7e-11
       DEK_C  1 psdeeirkaireiLreaDLdtvTkkkvReqLeeklgvd.Lsek.KafIkalIdei 53
                p+ e i++ +  ++++aDL+tvT k +R++L+ +lg +  +++ K+++k+ +d+i
  KOO24813.1  6 PTLESITSFLNGYIKTADLETVTIKNIRQMLSTELGAEqGTHYeKSWLKESVDQI 60
                677889999999**************************99*977******99976 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 2.1
       DEK_C  35 lgvdLsekKafIkalI 50 
                 +   L+e +++I++l+
  KOO24813.1 639 M-KRLKEAREEIDQLV 653
                 4.33888888998887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (970 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2442  (0.136204); expected 358.6 (0.02)
Passed bias filter:                      664  (0.037035); expected 358.6 (0.02)
Passed Vit filter:                       153  (0.00853366); expected 17.9 (0.001)
Passed Fwd filter:                        66  (0.00368119); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 1.74u 0.37s 00:00:02.11 Elapsed: 00:00:00.53
# Mc/sec: 5499.17
//
Query:       KOO24814.1  [L=373]
Description: hypothetical protein Ctob_006559 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.014   15.0   0.0      0.021   14.4   0.0    1.2  1  LOR       LURP-one-related


Domain annotation for each model (and alignments):
>> LOR  LURP-one-related
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.4   0.0   1.1e-06     0.021      60     185 ..     234     350 ..     224     352 .. 0.81

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 1.1e-06
                 TTS-EEEEEE--------EEEEEETT---G.GGEEEEEE----------E.EEEET..T--...-----SEEEES-TTTT--EEEECC--EEEEEEE-- CS
         LOR  60 ssGkvLltirrKklslhdrWevyrgester.kdpvftvkrssivslktkv.svfskrksnvvvkeektedfeikGsflkrsckivdesgklvAevkrKe 156
                  sG+vLl +++K   ++ ++ ++r +  +r + pv+++ rs  v +  ++ + +++++ n+ v  ++t+  + +Gs++ ++++++   g++vA+v+   
  KOO24814.1 234 MSGEVLLVLQEKFRCMNFEYDLFRIDPRTRmHVPVCKIVRS-CVDNFMRInDKYRIEHYNQ-VGLHGTV--TCSGSWP-NQFTLL-AGGAVVASVN--- 323
                 69**********************997766589*******8.7776666524566644443.4444444..779**66.579999.89*******7... PP

                 --------B-SEEEEE-TTSBHHHHHHHH CS
         LOR 157 tikgvllgkDvfklvvkpevDkaliiaLv 185
                   k++++  ++++++++   D  l +++ 
  KOO24814.1 324 --KQLVSLTETYHVQIAAHTDVLLFVGIA 350
                 ..799********************9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (373 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       606  (0.0338); expected 358.6 (0.02)
Passed bias filter:                      420  (0.0234257); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.24s 00:00:00.72 Elapsed: 00:00:00.41
# Mc/sec: 2753.60
//
Query:       KOO24815.1  [L=143]
Description: glutaredoxin [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.4e-21   75.7   0.1    3.5e-21   75.2   0.1    1.3  1  Glutaredoxin   Glutaredoxin
     0.0024   17.6   0.0     0.0027   17.5   0.0    1.1  1  Thioredoxin_9  Thioredoxin
     0.0067   16.9   0.0     0.0082   16.6   0.0    1.3  1  Thioredoxin_2  Thioredoxin-like domain
  ------ inclusion threshold ------
      0.034   14.5   0.0       0.22   11.8   0.0    2.0  2  GST_N_2        Glutathione S-transferase, N-terminal domain
      0.063   13.7   0.0        0.1   13.0   0.0    1.3  1  GST_N_3        Glutathione S-transferase, N-terminal domain
      0.087   13.3   0.0       0.12   12.8   0.0    1.4  1  DUF836         Glutaredoxin-like domain (DUF836)
      0.089   12.6   2.5       0.95    9.2   0.2    2.2  2  DSBA           DSBA-like thioredoxin domain
      0.091   12.8   0.1       0.21   11.7   0.1    1.6  1  Thioredoxin_3  Thioredoxin domain
       0.23   11.6   1.9        2.1    8.4   0.6    2.3  2  Thioredoxin_4  Thioredoxin


Domain annotation for each model (and alignments):
>> Glutaredoxin  Glutaredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   75.2   0.1   1.8e-24   3.5e-21       1      60 []      60     122 ..      60     122 .. 0.96

  Alignments for each domain:
  == domain 1  score: 75.2 bits;  conditional E-value: 1.8e-24
                   EEEEESTSSHHHHHHHHHHHHTTGGEEEEEGCCSH...HHHHHHHHHHTSSSSSEEEETTEEE CS
  Glutaredoxin   1 vvlftkptCpyCkkakrlLkelgvkfeeidvdkde...eireelkelsgvrtvPqvfidgkhv 60 
                   vv+++k++CpyC+k+k+l++++ vk++ i++d ++   +++e+l +++g++tvP+vf++gkhv
    KOO24815.1  60 VVVYSKSYCPYCAKTKALFDSMDVKYTAIELDLMDdgpKVQEALLSITGQKTVPNVFVGGKHV 122
                   8****************************999986778************************8 PP

>> Thioredoxin_9  Thioredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5   0.0   1.4e-06    0.0027      33     106 ..      48     120 ..      36     143 .] 0.82

  Alignments for each domain:
  == domain 1  score: 17.5 bits;  conditional E-value: 1.4e-06
                    HHHHHT--S-EEEEEE--TT-HHHHHHHHHHHHHHHH-TTEEEEEE-HHHHHHHTTTTTT.-SS--SSEEEEE-T CS
  Thioredoxin_9  33 eekiksiekklkilvltedwCgDaavnvPvlakiaelnpnievkillrdenlelmdqylt.ngaraiPtliilde 106
                    e++ik+   + k++v  + +C+ +a + + ++ +      ie++  l+d+ +++ +  l+  g++++P +++  +
     KOO24815.1  48 EDQIKKTIGSTKVVVYSKSYCPYCAKTKALFDSMDVKYTAIELD--LMDDGPKVQEALLSiTGQKTVPNVFVGGK 120
                    44677888889***********************9888788887..68************99******9998654 PP

>> Thioredoxin_2  Thioredoxin-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   0.0   4.1e-06    0.0082       5      40 ..      56      90 ..      51     139 .. 0.75

  Alignments for each domain:
  == domain 1  score: 16.6 bits;  conditional E-value: 4.1e-06
  Thioredoxin_2  5 gkpvlvvftdpdCpyCkklkkelkelddvtvrvllf 40
                   g   +vv++++ CpyC+k k+ ++++ dv+ + +  
     KOO24815.1 56 GSTKVVVYSKSYCPYCAKTKALFDSM-DVKYTAIEL 90
                   66789***************988888.665554443 PP

>> GST_N_2  Glutathione S-transferase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.5   0.0      0.38   7.5e+02       8      24 ..      38      54 ..      33      64 .. 0.79
   2 ?   11.8   0.0   0.00011      0.22       1      51 [.      67     117 ..      67     143 .] 0.85

  Alignments for each domain:
  == domain 1  score: 0.5 bits;  conditional E-value: 0.38
                HHHHHHHCT--EEEEEE CS
     GST_N_2  8 vlialalkglediisvv 24
                +l+ +a  gled+i++ 
  KOO24815.1 38 TLVQMAAAGLEDQIKKT 54
                66778889*****9974 PP

  == domain 2  score: 11.8 bits;  conditional E-value: 0.00011
                 S-HHHHHHHHHHHHCT--EEEEEEH...-TTSHHHHHHHHCTTTSSSEEE- CS
     GST_N_2   1 aCPwahRvlialalkglediisvvvlepkgfekseefprlnprgtVPvLwd 51 
                 +CP++ ++  +   + + ++ ++++l+++g +  e ++ ++++ tVP  ++
  KOO24815.1  67 YCPYCAKTKALFDSMDVKYTAIELDLMDDGPKVQEALLSITGQKTVPNVFV 117
                 5***********************9999999999*************8887 PP

>> GST_N_3  Glutathione S-transferase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.0   5.1e-05       0.1       2      48 ..      63     113 ..      62     128 .. 0.87

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 5.1e-05
                 ES-TTSHHHHHHHHHHHHHT--EEEE---TTTT....HHHHHHH-TT--SS CS
     GST_N_3   2 ygfpaSpyarrvrlaLnekglpvevvevtpgeh....deellaknplgkvP 48 
                 y+  ++py+ + + + +  +++++  e++  +      e+ll ++++++vP
  KOO24815.1  63 YSKSYCPYCAKTKALFDSMDVKYTAIELDLMDDgpkvQEALLSITGQKTVP 113
                 88999*******************999987774445788899999*****9 PP

>> DUF836  Glutaredoxin-like domain (DUF836)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0   5.9e-05      0.12       1      37 [.      59      93 ..      59     141 .. 0.68

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 5.9e-05
                -EEEEE-TT-HHHHHHHHHHHHHCCCTTEEEEEEETT CS
      DUF836  1 kltLyskpgChlCeqakekLkelkleegleleviDIa 37
                k++ ysk +C+ C + k++   + +  +++  + D  
  KOO24815.1 59 KVVVYSKSYCPYCAKTKALFDSMDV--KYTAIELDLM 93
                6899**************9995544..4444444444 PP

>> DSBA  DSBA-like thioredoxin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.2   0.2   0.00048      0.95       1      33 [.      59      91 ..      59      95 .. 0.87
   2 ?    3.3   0.2     0.031        61     168     187 ..     112     130 ..      98     134 .. 0.80

  Alignments for each domain:
  == domain 1  score: 9.2 bits;  conditional E-value: 0.00048
                EEEEEEBTTBHHHHHHHHHHHHHHHHCCTEEEE CS
        DSBA  1 tvdeffDvlCPyCylgkerleklaarspdvkvv 33
                +v++++  +CPyC   k+ +++++ +++ +++ 
  KOO24815.1 59 KVVVYSKSYCPYCAKTKALFDSMDVKYTAIELD 91
                5899*************9999999988777765 PP

  == domain 2  score: 3.3 bits;  conditional E-value: 0.031
                 SSEEEETTCEEEESSSSHHH CS
        DSBA 168 vPtvvvdgkrmvfGadrldt 187
                 vP v+v+gk  v G+d  + 
  KOO24815.1 112 VPNVFVGGK-HVGGNDATQA 130
                 9********.8999987765 PP

>> Thioredoxin_3  Thioredoxin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.1   0.00011      0.21       3      59 ..      60     121 ..      58     125 .. 0.76

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.00011
                    EEEESSS.STTCHHHHHHHHHHCHCC.TCECEEECC.TTHHHH..HHCT-SSSSEEECTTCE CS
  Thioredoxin_3   3 ikvlgpg.CakCpklekavkeaaaek.gikaevekv.tdfeei..ekygVmsvPalvidgkv 59 
                    + v +++ C++C k+++++ ++  +   i++++ +   +++e   +  g  +vP +++ gk 
     KOO24815.1  60 VVVYSKSyCPYCAKTKALFDSMDVKYtAIELDLMDDgPKVQEAllSITGQKTVPNVFVGGKH 121
                    44544445***********9998888459997776667777766777888999999999986 PP

>> Thioredoxin_4  Thioredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.4   0.6    0.0011       2.1      15      33 ..      58      76 ..      51      99 .. 0.85
   2 ?    2.6   0.0     0.067   1.3e+02     134     154 ..     105     125 ..      78     141 .. 0.78

  Alignments for each domain:
  == domain 1  score: 8.4 bits;  conditional E-value: 0.0011
                   EEEEEEE-TT-HHHHHHHH CS
  Thioredoxin_4 15 vtvieyedlrCphCakfee 33
                    +v++y+   Cp+Cak + 
     KOO24815.1 58 TKVVVYSKSYCPYCAKTKA 76
                   5799***********9765 PP

  == domain 2  score: 2.6 bits;  conditional E-value: 0.067
                    HHHT--SS-EEEETTEEE-TT CS
  Thioredoxin_4 134 kkagiestPtfiingekveep 154
                      +g +++P ++++g+ v ++
     KOO24815.1 105 SITGQKTVPNVFVGGKHVGGN 125
                    56778899*******999655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (143 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       502  (0.0279993); expected 358.6 (0.02)
Passed bias filter:                      410  (0.022868); expected 358.6 (0.02)
Passed Vit filter:                        48  (0.00267723); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.41u 0.27s 00:00:00.68 Elapsed: 00:00:00.43
# Mc/sec: 1008.39
//
Query:       KOO24816.1  [L=392]
Description: lipoic acid synthetase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    2.9e-10   40.8   0.0    6.1e-10   39.7   0.0    1.6  1  Radical_SAM  Radical SAM superfamily
  ------ inclusion threshold ------
      0.089   13.2   0.0       0.19   12.1   0.0    1.6  1  LIAS_N       N-terminal domain of lipoyl synthase of Radical_


Domain annotation for each model (and alignments):
>> Radical_SAM  Radical SAM superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.7   0.0   6.8e-14   6.1e-10       5     166 ..     138     303 ..     134     304 .. 0.90

  Alignments for each domain:
  == domain 1  score: 39.7 bits;  conditional E-value: 6.8e-14
                  SEESS--TTTSCCTTHHHHHHHHHHHHHHHHHHHHHHHHHTTSEEEEEESSTGGGSTTHHHHHHHHHHTC....CCTEEEEEEECSSCHGHHHHHHHH CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx....xxxxxxxxxxxxxxxxxxxxxxxx RF
  Radical_SAM   5 rgCnlrCsfCarpetvrregrgrslsveeileevkelkaekgvkevilgggepllypdfvellerlakla....vpgiritvetngtlpdeeklerll 98 
                    C+++C+fCa+++       ++  + ee  + ++++   +gv++++l++ + ++ pd   + ++         +p +r+ + ++ +  d + ++ l+
   KOO24816.1 138 DTCTRGCKFCAVKT----DAAPEPPDEEEPWNTADAV-TQWGVDYIVLTSVDRDDLPDGGAAHFAQTVGLlklrKPSLRVECLVSDFQGDLKSVAMLA 230
                  67***********5....79999999***********.899***************99999988877766777799************99******** PP

                  HTT-SEEEEEEBSSSHHHHHHHHT.CTSHHHHHHHHHHHHHHTTSET......EEEEEEEBTTTSHHHHHHHHHH CS
                  xxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxx......xxxxxxxxxxxxxxxxxxxxxx RF
  Radical_SAM  99 elgvdrvslgleaaddekvlklmn.rghtfeevlealeklreagikr......vvdrivglpGendeeleellel 166
                  + g+d++++++e++     +  ++ ++ ++++ l +l+ ++++g  +      +++ i+++ Ge+++e+ +++++
   KOO24816.1 231 QSGLDVYAHNIETVER--LQPFVRdKRASYKQSLSVLKEAKRLGELPgaqrvyTKSSIMLGLGETEAEILQTMHD 303
                  ***************9..789998999****************9444456669****************999876 PP

>> LIAS_N  N-terminal domain of lipoyl synthase of Radical_SAM family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   2.2e-05      0.19      72     108 .]      75     119 ..      59     119 .. 0.78

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 2.2e-05
      LIAS_N  72 rLPswlktkiPlGkn..ynkikndlreL......nLhtvCeeaRC 108
                 r P+w     P G+n  ++ +k++l +       +L tvCeea C
  KOO24816.1  75 RRPDWFHVPAPGGANtrFADLKESLEKTahegkpRLATVCEEAQC 119
                 669*********9987799****998653333337*********9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (392 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       403  (0.0224776); expected 358.6 (0.02)
Passed bias filter:                      353  (0.0196888); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.47u 0.24s 00:00:00.71 Elapsed: 00:00:00.39
# Mc/sec: 2977.72
//
Query:       KOO24817.1  [L=4445]
Description: hypothetical protein Ctob_010678, partial [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.7e-43  147.0   0.0    3.1e-12   47.2   0.0    7.0  5  Filamin          Filamin/ABP280 repeat
    4.9e-29   97.9  56.9      0.003   17.5   1.2   13.1 13  LRR_6            Leucine Rich repeat
    4.6e-09   36.5   0.0    6.7e-05   23.1   0.0    4.2  3  Invasin_D3       Invasin, domain 3
    2.2e-07   31.1  15.5        2.5    8.6   0.2    7.0  7  LRR_4            Leucine Rich repeats (2 copies)
    8.5e-05   22.9   0.0     0.0019   18.6   0.0    2.6  2  EF-hand_7        EF-hand domain pair
    0.00019   21.7   0.0    0.00043   20.5   0.0    1.6  1  C2               C2 domain
    0.00039   20.4   0.1     0.0016   18.4   0.1    2.0  2  NACHT            NACHT domain
     0.0024   18.0   0.0         28    4.8   0.0    4.7  5  DUF4030          Protein of unknown function (DUF4030)
     0.0036   17.3   0.0       0.11   12.6   0.0    2.5  2  NDK              Nucleoside diphosphate kinase
  ------ inclusion threshold ------
      0.078   13.0   0.6       0.24   11.4   0.6    1.9  1  KOW              KOW motif
       0.12   12.3   0.1        5.6    7.2   0.0    3.5  2  EF-hand_6        EF-hand domain
       0.13   12.2   0.5         33    4.4   0.0    3.2  3  Glyco_hydro2_C5  Glycoside hydrolase family 2 C-terminal doma
       0.64    9.9   2.8        0.5   10.3   0.1    2.2  3  TFIIIC_delta     Transcription factor IIIC subunit delta N-te
        3.8    7.0   9.2        8.9    5.8   9.2    1.6  1  Miff             Mitochondrial and peroxisomal fission factor


Domain annotation for each model (and alignments):
>> Filamin  Filamin/ABP280 repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.2   0.0   2.4e-15   3.1e-12       4     102 ..    1216    1320 ..    1213    1321 .. 0.80
   2 !   21.9   0.0   1.9e-07   0.00024       3     102 ..    1330    1626 ..    1328    1627 .. 0.78
   3 !   22.6   0.0   1.1e-07   0.00015      31     102 ..    1667    1745 ..    1652    1746 .. 0.72
   4 !   13.3   0.0   8.6e-05      0.11       5     102 ..    1757    2006 ..    1753    2007 .. 0.64
   5 !   26.1   0.0   9.3e-09   1.2e-05      18      99 ..    2039    2112 ..    2022    2114 .. 0.81

  Alignments for each domain:
  == domain 1  score: 47.2 bits;  conditional E-value: 2.4e-15
                  TTSEEEESGGGTEEETTS-EEEEEEESSSTSCCCSTTS........EEEEE......ESSTS.....EEEEEEEE-SSSEEEEEE--SSSCEEEEEE CS
     Filamin    4 pskskvnGpGieasvagesltFtvytkdakgeksevgg......delqvriv....tgsphgaatkssvkievvdnedgtytvsYtpeepgtyrvsv 90  
                   s+++++G G++ + +g  ++F v+t  ++ ++ + +         l vri+    +++++ a     + ++++d++dg++ ++Y+p ++g+y + v
  KOO24817.1 1216 SSRCRASGTGLNVAHVGTLAQFVVNTTPEGDGQPPTEPaggsghPGLTVRIRgrasIKDSQPA----TIRVKIIDRGDGSFMCEYKPWMSGNYVIDV 1308
                  69*************************443333333222444444455999776666666666....88999************************* PP

                  EETTCE-TTSSE CS
     Filamin   91 kldgkhiggsPf 102 
                   l+g+hi+gsPf
  KOO24817.1 1309 LLGGEHIRGSPF 1320
                  ***********9 PP

  == domain 2  score: 21.9 bits;  conditional E-value: 1.9e-07
                  STTSEEEESGGGTEEETTS-EEEEEEESSSTSCCCSTTS..EEEEE..........ESSTS.................................... CS
     Filamin    3 dpskskvnGpGieasvagesltFtvytkdakgeksevggdelqvriv........tgsphgaatk................................ 59  
                  ++s++ v G+G+ a+v  ++ +F+v+  da g++    ++el+v ++        +        k                                
  KOO24817.1 1330 EASRCLVRGDGLYAAVSRKPQKFEVDFVDALGDPAF--AEELDVYVErvgdieaeV--------Ktapaepvalvgaalderlakeakstikpktls 1416
                  79*******************************766..588998887555554440........244555566666666666677777777788888 PP

                  ................................................................................................. CS
     Filamin   60 ................................................................................................. 59  
                                                                                                                   
  KOO24817.1 1417 pawnetfemvgilrkfvasglllkvfdcdnplkpekdeslgraqvsldclrqrdtsqfveslstgsegeiakgkiffgvtwvpptsidspssdvggs 1513
                  8999999*********************************************999999999999999999999999999999999999999999888 PP

                  ..................................................EEEEEEEE-S............................SSEEEEEE- CS
     Filamin   60 .................................................ssvkievvdne............................dgtytvsYt 79  
                                                                   s                                        t+tv Y 
  KOO24817.1 1514 evrssyhpldafarqrhetlwalrtgldkwlaksaaertskkkqfslvpS---------TahelstadpfgfafgglspgllhshgrlSKTHTVLYS 1601
                  88888888888887777777777777766666655555555444444430.........0333334445555555555555555555599******* PP

                  -SSSCEEEEEEEETTCE-..TTSSE CS
     Filamin   80 peepgtyrvsvkldgkhi..ggsPf 102 
                  +  +g+y++++ l+++h+  +gsPf
  KOO24817.1 1602 IGLAGRYKLHIGLRQQHVplPGSPF 1626
                  ***************9873369998 PP

  == domain 3  score: 22.6 bits;  conditional E-value: 1.1e-07
                  SSTSCCCSTTS..EEEEE...........ESSTS.....EEEEEEEE-SSSEEEEEE--SSSCEEEEEEEETTCE-TTSSE CS
     Filamin   31 dakgeksevggdelqvriv.........tgsphgaatkssvkievvdnedgtytvsYtpeepgtyrvsvkldgkhiggsPf 102 
                  d+ g+ +  gg  + v +          + + h ++ +  v+++v d+ dgty+  Y + + g + v+v++dg+++ gsP 
  KOO24817.1 1667 DQLGNACIEGGASVSVGLHkvwlnahpeMDQVHVEN-Q-PVQWRVLDQSDGTYQLDYCCCKLGAFPVEVTVDGEPVCGSPI 1745
                  555555555555555444444444444323333332.2.799**************************************6 PP

  == domain 4  score: 13.3 bits;  conditional E-value: 8.6e-05
                  TSEEEESGGGTEEETTS-EEEEEEESSSTSCCCSTTS...EEEEE..................ESSTS............................. CS
     Filamin    5 skskvnGpGieasvagesltFtvytkdakgeksevgg.delqvriv................tgsphgaatk......................... 59  
                  s+ +++G G++ ++age +t+++++ d  g+    g+   +++ +v                                                   
  KOO24817.1 1757 SRFVLSGAGLKMATAGELATVSIKVHDRFGNVADPGEaPSFGLALVsvdrtmdargarggprA--------Dgksnpktdkgsapppagstfvesrg 1845
                  677788888888888888888888888877755544445566555555565555555554440........03333355555566677777777777 PP

                  ................................................................................................. CS
     Filamin   60 ................................................................................................. 59  
                                                                                                                   
  KOO24817.1 1846 rkddqykgfkgdsmeltserlvdgyvirytpresgtfdlhmwvvvegnvkgservalpgspfpvqvqmgsasaagsfvngtdatpvlgvvptfagek 1942
                  7777777788877777777888777777777777777777777777777777777777777777666666666666666666666655555555555 PP

                  ......................EEEEEEEE-SSSEEEEEE--SSSCEEEEEEEETTCE-TTSSE CS
     Filamin   60 ............s.........svkievvdnedgtytvsYtpeepgtyrvsvkldgkhiggsPf 102 
                              +         ++++   + + g y+v+  p+ +gt++++v l g +i gsP 
  KOO24817.1 1943 livrpqlrdllgNptppvgelvQLETPKPKGGVGAYEVQLEPTIAGTHTLHVQLHGHEISGSPL 2006
                  4444444444430444444444444444555588999999999999999999999999999996 PP

  == domain 5  score: 26.1 bits;  conditional E-value: 9.3e-09
                  ETTS-EEEEEEESSSTSCCCSTTS..EEEEE..ESSTS.....EEEEEEEE-SSSEEEEEE--SSSCEEEEEEEETTCE-TT CS
     Filamin   18 vagesltFtvytkdakgeksevggdelqvrivtgsphgaatkssvkievvdnedgtytvsYtpeepgtyrvsvkldgkhigg 99  
                   ++e  ++     d +g+k+++gg++++ +    +++        ++ ++d +dgty++ +t+++pg+++++vk+ g ++++
  KOO24817.1 2039 DVNEMCMVLLTIIDRYGNKVTKGGHRIEAKG--FGSSA------SPCAIEDLNDGTYKIAFTAAAPGEVKLQVKVEGSEVAP 2112
                  566666777777799******9999999887..44433......479******************************99875 PP

>> LRR_6  Leucine Rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.2   0.0       1.1   1.4e+03       5      13 ..     900     908 ..     900     909 .. 0.93
   2 ?   -0.8   0.0       1.7   2.2e+03       5      17 ..    4005    4017 ..    4003    4025 .. 0.75
   3 !   10.5   0.1   0.00042      0.53       1      23 [.    4029    4051 ..    4029    4052 .. 0.93
   4 !   17.5   1.2   2.4e-06     0.003       1      24 []    4057    4080 ..    4057    4080 .. 0.93
   5 !    9.2   0.1    0.0011       1.4       1      21 [.    4085    4105 ..    4085    4108 .. 0.90
   6 !   17.4   1.0   2.6e-06    0.0033       1      24 []    4159    4182 ..    4159    4182 .. 0.94
   7 !   12.6   0.1   8.7e-05      0.11       1      24 []    4187    4210 ..    4187    4210 .. 0.96
   8 !   17.5   1.2   2.4e-06     0.003       1      24 []    4215    4238 ..    4215    4238 .. 0.93
   9 !    8.7   0.1    0.0016         2       1      21 [.    4243    4263 ..    4243    4266 .. 0.90
  10 !   16.3   0.5   5.8e-06    0.0074       2      24 .]    4318    4340 ..    4317    4340 .. 0.93
  11 !    7.7   0.0    0.0033       4.2       1      20 [.    4345    4364 ..    4345    4366 .. 0.91
  12 ?    1.1   0.3      0.44   5.6e+02      11      24 .]    4369    4382 ..    4369    4382 .. 0.89
  13 !   11.9   0.3   0.00015      0.19       1      23 [.    4387    4409 ..    4387    4410 .. 0.95

  Alignments for each domain:
  == domain 1  score: -0.2 bits;  conditional E-value: 1.1
       LRR_6   5 LteLdLsgN 13 
                 Lt+LdLsg+
  KOO24817.1 900 LTALDLSGC 908
                 8*******9 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 1.7
       LRR_6    5 LteLdLsgNdIgD 17  
                  L +L+L+ N+++D
  KOO24817.1 4005 LASLSLQENKLTD 4017
                  6689******988 PP

  == domain 3  score: 10.5 bits;  conditional E-value: 0.00042
       LRR_6    1 snthLteLdLsgNdIgDeGaeaL 23  
                  +nt+L  LdL gN++g e ++a+
  KOO24817.1 4029 TNTTLAQLDLGGNELGAESGKAM 4051
                  59*****************9996 PP

  == domain 4  score: 17.5 bits;  conditional E-value: 2.4e-06
       LRR_6    1 snthLteLdLsgNdIgDeGaeaLa 24  
                  +nt+Lt L+L++N++gD+G+ aLa
  KOO24817.1 4057 TNTTLTQLNLNSNKLGDAGGCALA 4080
                  59*****************98876 PP

  == domain 5  score: 9.2 bits;  conditional E-value: 0.0011
       LRR_6    1 snthLteLdLsgNdIgDeGae 21  
                  +nt+L  LdL gN++g e ++
  KOO24817.1 4085 TNTTLAQLDLGGNKLGAESGK 4105
                  59***************9987 PP

  == domain 6  score: 17.4 bits;  conditional E-value: 2.6e-06
       LRR_6    1 snthLteLdLsgNdIgDeGaeaLa 24  
                  +n++Lt L+L++N++gD+G+ aLa
  KOO24817.1 4159 HNRSLTQLNLNSNKLGDAGGCALA 4182
                  8******************98876 PP

  == domain 7  score: 12.6 bits;  conditional E-value: 8.7e-05
       LRR_6    1 snthLteLdLsgNdIgDeGaeaLa 24  
                  +n++L  LdL gN++g e ++a+a
  KOO24817.1 4187 TNMTLAQLDLGGNELGAESGKAIA 4210
                  59********************98 PP

  == domain 8  score: 17.5 bits;  conditional E-value: 2.4e-06
       LRR_6    1 snthLteLdLsgNdIgDeGaeaLa 24  
                  +nt+Lt L+L++N++gD+G+ aLa
  KOO24817.1 4215 TNTTLTQLNLNSNKLGDAGGCALA 4238
                  59*****************98876 PP

  == domain 9  score: 8.7 bits;  conditional E-value: 0.0016
       LRR_6    1 snthLteLdLsgNdIgDeGae 21  
                  +nt+L  LdL gN++g e ++
  KOO24817.1 4243 TNTTLAQLDLGGNELGAESGK 4263
                  59***************9887 PP

  == domain 10  score: 16.3 bits;  conditional E-value: 5.8e-06
       LRR_6    2 nthLteLdLsgNdIgDeGaeaLa 24  
                  n++Lt L+L++N++gD+G+ aLa
  KOO24817.1 4318 NRSLTQLNLNSNKLGDAGGCALA 4340
                  9*****************98876 PP

  == domain 11  score: 7.7 bits;  conditional E-value: 0.0033
       LRR_6    1 snthLteLdLsgNdIgDeGa 20  
                  +nt+L  LdL gN++g e +
  KOO24817.1 4345 TNTTLAQLDLGGNELGAEIV 4364
                  59**************9976 PP

  == domain 12  score: 1.1 bits;  conditional E-value: 0.44
       LRR_6   11 sgNdIgDeGaeaLa 24  
                  s+N++gD+G+ aLa
  KOO24817.1 4369 SSNKLGDAGGCALA 4382
                  89*******98876 PP

  == domain 13  score: 11.9 bits;  conditional E-value: 0.00015
       LRR_6    1 snthLteLdLsgNdIgDeGaeaL 23  
                  +nt+L  LdL gN++g e ++aL
  KOO24817.1 4387 TNTTLVQLDLGGNELGVESGKAL 4409
                  59********************9 PP

>> Invasin_D3  Invasin, domain 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.6   0.0     0.063        81      23      83 ..    1660    1738 ..    1652    1748 .. 0.72
   2 ?    3.9   0.0     0.051        65      56      86 ..    1972    2002 ..    1943    2010 .. 0.73
   3 !   23.1   0.0   5.3e-08   6.7e-05      12      86 ..    2034    2110 ..    2025    2119 .. 0.78

  Alignments for each domain:
  == domain 1  score: 3.6 bits;  conditional E-value: 0.063
  Invasin_D3   23 tltvtlkDangnp.vsg.ltvtfstt....sag.tlsavt...........dngdGtytatLtattagtatitptvnGv 83  
                   l + l D+ gn+ + g ++v++       +a   + +v            d++dGty+      + g+  +++tv+G+
  KOO24817.1 1660 GLRLRLSDQLGNAcIEGgASVSVGLHkvwlNAHpEMDQVHvenqpvqwrvlDQSDGTYQLDYCCCKLGAFPVEVTVDGE 1738
                  588999999999996664779999774454222422222233444446677**********999999*99999999994 PP

  == domain 2  score: 3.9 bits;  conditional E-value: 0.051
  Invasin_D3   56 dngdGtytatLtattagtatitptvnGvaia 86  
                  + g G y+++L  t agt t+ +++ G +i+
  KOO24817.1 1972 KGGVGAYEVQLEPTIAGTHTLHVQLHGHEIS 2002
                  3455***********************5544 PP

  == domain 3  score: 23.1 bits;  conditional E-value: 5.3e-08
  Invasin_D3   12 asivAdGkststltvtlkDangnpvsgltvtfstt...sagtlsavtdngdGtytatLtattagtatitptvnG.vaia 86  
                  ++++Ad ++  ++ +t+ D  gn v+     + ++   s+ +  a++d +dGty+  +ta++ g+++++++v+G +   
  KOO24817.1 2034 TEAAADVNEMCMVLLTIIDRYGNKVTKGGHRIEAKgfgSSASPCAIEDLNDGTYKIAFTAAAPGEVKLQVKVEGsE--V 2110
                  567899999999************66555555544223333666999***************************32..3 PP

>> LRR_4  Leucine Rich repeats (2 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.0       6.1   7.8e+03      14      37 ..     937     962 ..     928     966 .. 0.70
   2 ?    3.6   0.1     0.073        94       5      33 ..    4007    4041 ..    4005    4047 .. 0.74
   3 !    8.6   0.2    0.0019       2.5       2      36 ..    4060    4099 ..    4059    4103 .. 0.80
   4 !    6.7   0.2    0.0081        10       2      33 ..    4162    4199 ..    4138    4206 .. 0.72
   5 !    7.7   0.2    0.0038       4.9       2      33 ..    4218    4255 ..    4217    4261 .. 0.80
   6 !    8.3   0.2    0.0025       3.2       2      33 ..    4320    4357 ..    4295    4362 .. 0.68
   7 ?   -1.3   0.0       2.7   3.4e+03      10      33 ..    4370    4399 ..    4369    4404 .. 0.65

  Alignments for each domain:
  == domain 1  score: -2.5 bits;  conditional E-value: 6.1
                 -E-S-..HHH-TT--EEE-.-S---- CS
       LRR_4  14 tdipl..leklpnLkeLdLsgNnlit 37 
                  ++p   ++ +p L e++L g+  ++
  KOO24817.1 937 ATLPVgiFGACPALAEINLAGCEGLS 962
                 5566665667*********9984444 PP

  == domain 2  score: 3.6 bits;  conditional E-value: 0.073
                  EEE--SS---E-S-HH.....H.-TT--EEE-.-S CS
       LRR_4    5 vLdLsnNqltdiplle.....k.lpnLkeLdLsgN 33  
                  +L+L+ N+ltd ++l+     + ++ L +LdL gN
  KOO24817.1 4007 SLSLQENKLTDGEGLKmfaalQtNTTLAQLDLGGN 4041
                  69***9*****999774445533666777999888 PP

  == domain 3  score: 8.6 bits;  conditional E-value: 0.0019
                  S--EEE--SS---E-S-..HH...H.-TT--EEE-.-S--- CS
       LRR_4    2 nLevLdLsnNqltdipl..le...k.lpnLkeLdLsgNnli 36  
                   L+ L+L++N+l d ++  l+   + ++ L +LdL gN ++
  KOO24817.1 4060 TLTQLNLNSNKLGDAGGcaLAvalQtNTTLAQLDLGGN-KL 4099
                  79*************99663366644888******888.55 PP

  == domain 4  score: 6.7 bits;  conditional E-value: 0.0081
                  S--EEE--SS---E-S-..HH.H.-TT..--EEE-.-S CS
       LRR_4    2 nLevLdLsnNqltdipl..le.k.lpn..LkeLdLsgN 33  
                  +L+ L+L++N+l d ++  l+    +n  L +LdL gN
  KOO24817.1 4162 SLTQLNLNSNKLGDAGGcaLAvAlQTNmtLAQLDLGGN 4199
                  68888888888888888543353345533666777666 PP

  == domain 5  score: 7.7 bits;  conditional E-value: 0.0038
                  S--EEE--SS---E-S-..HH...H.-TT--EEE-.-S CS
       LRR_4    2 nLevLdLsnNqltdipl..le...k.lpnLkeLdLsgN 33  
                   L+ L+L++N+l d ++  l+   + ++ L +LdL gN
  KOO24817.1 4218 TLTQLNLNSNKLGDAGGcaLAvalQtNTTLAQLDLGGN 4255
                  79************999663366644888******888 PP

  == domain 6  score: 8.3 bits;  conditional E-value: 0.0025
                  S--EEE--SS---E-S-..HH...H.-TT--EEE-.-S CS
       LRR_4    2 nLevLdLsnNqltdipl..le...k.lpnLkeLdLsgN 33  
                  +L+ L+L++N+l d ++  l+   + ++ L +LdL gN
  KOO24817.1 4320 SLTQLNLNSNKLGDAGGcaLAvalQtNTTLAQLDLGGN 4357
                  57777777777777777552254433666777777666 PP

  == domain 7  score: -1.3 bits;  conditional E-value: 2.7
                  SS---E-S-..HH....H-TT--EEE-.-S CS
       LRR_4   10 nNqltdipl..le....klpnLkeLdLsgN 33  
                  +N+l d ++  l+     ++ L +LdL gN
  KOO24817.1 4370 SNKLGDAGGcaLAvalqTNTTLVQLDLGGN 4399
                  577777777542254424788999999888 PP

>> EF-hand_7  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.9   0.0      0.49   6.2e+02      42      70 ..     250     278 ..     223     279 .. 0.81
   2 !   18.6   0.0   1.5e-06    0.0019       5      69 ..    2142    2201 ..    2140    2203 .. 0.95

  Alignments for each domain:
  == domain 1  score: 0.9 bits;  conditional E-value: 0.49
   EF-hand_7  42 sdeelellfkefDtdkdGvisfdEFlkly 70 
                 ++ e   ++  +D d+ G++s d++++ +
  KOO24817.1 250 PEVEAAMILAAIDVDRFGSVSCDDLRARM 278
                 455677889999************99876 PP

  == domain 2  score: 18.6 bits;  conditional E-value: 1.5e-06
   EF-hand_7    5 keaFkelDtdgdgyldkeellrllrkifqgagegsklsdeelellfkefDtdkdGvisfdEFlkl 69  
                  +eaF +l +dg+ +++ ++l++ l+k     +  sk+s+  ++ l+  +   +dG++  +EF++l
  KOO24817.1 2142 MEAFSMLAKDGRDSISISDLRSTLTK-----DGSSKVSEADIQSLMSQVGVIGDGELRIEEFERL 2201
                  689**********************9.....*******************************986 PP

>> C2  C2 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.5   0.0   3.4e-07   0.00043      30      94 ..    1398    1469 ..    1367    1477 .. 0.74

  Alignments for each domain:
  == domain 1  score: 20.5 bits;  conditional E-value: 3.4e-07
                  E..ECEEEEEE-SCSSSSSSEEEEEEEE.EESC.HTTSEEEEEEEEECS...SSTEEEEEEEEEEGHHHHTT CS
          C2   30 l..dgkqkakTrviknslnPvWnekftf.evae.leeakLeveVfdndr...lskddfiGkveiplstllsg 94  
                  l  + ++ ak+++++++l+P Wne+f++  +     ++ L ++Vfd d+    +kd+ +G+++++l+ l ++
  KOO24817.1 1398 LdeRLAKEAKSTIKPKTLSPAWNETFEMvGILRkFVASGLLLKVFDCDNplkPEKDESLGRAQVSLDCLRQR 1469
                  35555788899989*************953333578999*******99977669999********9985544 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.0       2.6   3.3e+03     118     164 ..    1621    1666 ..    1617    1668 .. 0.84
   2 !   18.4   0.1   1.2e-06    0.0016      12     161 ..    3530    3669 ..    3526    3674 .. 0.72

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 2.6
                  TT--EEEEEEECCCHHHHCTTSSCE..EEEE--TCCHHHHHHHHCTT CS
       NACHT  118 lpeasllltvrpralrdleeqleeaivlevegfsesrrkqlvrkyfs 164 
                  lp++++ l vrp+a + +  ++ +a   e++g++ +  +q +r  +s
  KOO24817.1 1621 LPGSPFALEVRPGAASAILTTIPRA-ERELRGMVDEGWQQGLRLRLS 1666
                  7999999999999999999999999.999999999998887776655 PP

  == domain 2  score: 18.4 bits;  conditional E-value: 1.2e-06
                  CHHHHHHHHHHHHCTS-SCCCC-SEEEEEETTTTTTS-...-HCHHHCCCCTS--SSS-C......CHHHHCC.SCCCEEEEEE-STT-SS-TCH.. CS
       NACHT   12 GKTtLlqklalawaegklpqgafklvFflslrelsrsgnarsladllfsqlpepaapvse......vwavlle.lperlLlilDglDelvtdlgqke 101 
                  GKTtL+ + ++++ ++        ++++++++ l+ +   r   d l+s++ +  a  +       ++ ++++  ++r+Ll+lDglDe+ ++  +  
  KOO24817.1 3530 GKTTLISQAVVLALDRA-----ELVPIVIKVQLLQAR--LRDAPDALASHWNWVDAYLRLtegpalYRMLRQAmMARRALLLLDGLDEAGAKRAE-- 3617
                  78888766555544444.....256666666666665..356778888888888887776778887444443315799************97776.. PP

                  .......HHHHHCTTTTT-.-EEEEEEECCCHHHHCTTSSCE..EEEE--TCCHHHHHHHH CS
       NACHT  102 kqpvrtlLselirkkllpe.asllltvrpralrdleeqleeaivlevegfsesrrkqlvrk 161 
                         +++ + + l p+   +l t+rp ++  +e  ++  + l++++++e + +q + +
  KOO24817.1 3618 -------IEQHVVEVLAPQgHVMLCTSRPAGV--VEARFSGFRLLKLAPLTEAQQEQALLQ 3669
                  .......6666666666650556779******..*******************99998766 PP

>> DUF4030  Protein of unknown function (DUF4030)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.4   0.0       0.5   6.5e+02      88     121 ..    4026    4059 ..    4021    4069 .. 0.90
   2 ?    4.2   0.0     0.035        45      87     127 ..    4081    4121 ..    4077    4134 .. 0.84
   3 ?    0.2   0.0       0.6   7.7e+02      87     121 ..    4183    4217 ..    4168    4227 .. 0.87
   4 ?    4.8   0.0     0.022        28      87     135 ..    4239    4289 ..    4234    4294 .. 0.80
   5 ?   -1.2   0.0       1.6   2.1e+03      87     121 ..    4383    4417 ..    4380    4423 .. 0.90

  Alignments for each domain:
  == domain 1  score: 0.4 bits;  conditional E-value: 0.5
     DUF4030   88 tlaiktkissadsGakelGkkiekevddllktkk 121 
                  +l+ +t++++ d G +elG    k + ++lkt+ 
  KOO24817.1 4026 ALQTNTTLAQLDLGGNELGAESGKAMVKVLKTNT 4059
                  57889***************************86 PP

  == domain 2  score: 4.2 bits;  conditional E-value: 0.035
     DUF4030   87 vtlaiktkissadsGakelGkkiekevddllktkkvkkwie 127 
                  v+l+ +t++++ d G ++lG    ke+ ++lkt++  + + 
  KOO24817.1 4081 VALQTNTTLAQLDLGGNKLGAESGKEMVKVLKTNATLRTVA 4121
                  678999***************************99876654 PP

  == domain 3  score: 0.2 bits;  conditional E-value: 0.6
     DUF4030   87 vtlaiktkissadsGakelGkkiekevddllktkk 121 
                  v+l+ + ++++ d G +elG    k + + lkt+ 
  KOO24817.1 4183 VALQTNMTLAQLDLGGNELGAESGKAIAEALKTNT 4217
                  456667778899*********************86 PP

  == domain 4  score: 4.8 bits;  conditional E-value: 0.022
     DUF4030   87 vtlaiktkissadsGakelGkkiekevddllktkkvkkwi..endsytiei 135 
                  v+l+ +t++++ d G +elG    ke+ + lkt+   + +  ++d  +i +
  KOO24817.1 4239 VALQTNTTLAQLDLGGNELGAESGKEMVEALKTNVTLRSValDGDILSIAV 4289
                  678999***************************977554311556666655 PP

  == domain 5  score: -1.2 bits;  conditional E-value: 1.6
     DUF4030   87 vtlaiktkissadsGakelGkkiekevddllktkk 121 
                  v+l+ +t++ + d G +elG    k + + lkt+ 
  KOO24817.1 4383 VALQTNTTLVQLDLGGNELGVESGKALGEALKTNS 4417
                  678899***************************86 PP

>> NDK  Nucleoside diphosphate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.9   0.0      0.17   2.1e+02       2      33 ..    2272    2303 ..    2271    2328 .. 0.87
   2 !   12.6   0.0   8.3e-05      0.11      85     131 ..    2452    2509 ..    2400    2512 .. 0.76

  Alignments for each domain:
  == domain 1  score: 1.9 bits;  conditional E-value: 0.17
                  EEEEEE-HHHHHTT-HHHHHHHHHHHT-EEEE CS
         NDK    2 rtlvliKPdavkrgligeiisrleekglkiva 33  
                  +++v iKP+a + ++ + + +++ ekg +iv+
  KOO24817.1 2272 EAFVFIKPHANNAEVQNLVRAKFVEKGIEIVS 2303
                  689***************************97 PP

  == domain 2  score: 12.6 bits;  conditional E-value: 8.3e-05
                  HHH--SSTTTSSTTSHHHHH-SSS...........TT-SEEE-SSHHHHHHHHHHHST CS
         NDK   85 eliGatnpaeaapgtiRadfgvsl...........geNlvHgSdseesaereiklfFk 131 
                  +++G+t+p++a p+++R+     +           g+N vH+S+s+ +   e + ++k
  KOO24817.1 2452 NVLGPTDPSKAPPESLRGTLFSGWegfglasapntGDNGVHASASPFEGLCERQNWLK 2509
                  579**************75444444677777888788********9888777777766 PP

>> KOW  KOW motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.6   0.00018      0.24       2      27 ..    3809    3836 ..    3808    3841 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00018
                  TSEEEESSSTTTTCEEEEEEEETTT..T CS
         KOW    2 GdhVkVvsGphkGktGkVvkvdqhk..v 27  
                  G +V+ ++G  kG+ G++vkv++ +  +
  KOO24817.1 3809 GHYVELLDGERKGQRGVIVKVNKTRnpY 3836
                  568999****************998554 PP

>> EF-hand_6  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.1   0.0      0.91   1.2e+03       8      24 ..     260     276 ..     256     282 .. 0.85
   2 ?    7.2   0.0    0.0043       5.6       4      28 ..    2143    2167 ..    2141    2190 .. 0.91

  Alignments for each domain:
  == domain 1  score: -0.1 bits;  conditional E-value: 0.91
   EF-hand_6   8 lfDkdgdGkidaeElrk 24 
                 ++D+d+ G+++ ++lr+
  KOO24817.1 260 AIDVDRFGSVSCDDLRA 276
                 79*************97 PP

  == domain 2  score: 7.2 bits;  conditional E-value: 0.0043
   EF-hand_6    4 eaFklfDkdgdGkidaeElrkalrk 28  
                  eaF ++ kdg  +i++++lr+ l+k
  KOO24817.1 2143 EAFSMLAKDGRDSISISDLRSTLTK 2167
                  89********************995 PP

>> Glyco_hydro2_C5  Glycoside hydrolase family 2 C-terminal domain 5
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.0       4.5   5.8e+03      15      31 ..    1772    1788 ..    1768    1790 .. 0.85
   2 ?    4.1   0.0     0.031        39       9      41 ..    2035    2067 ..    2031    2110 .. 0.88
   3 ?    4.4   0.0     0.026        33      23      53 ..    3460    3490 ..    3457    3499 .. 0.92

  Alignments for each domain:
  == domain 1  score: -2.8 bits;  conditional E-value: 4.5
  Glyco_hydro2_C5   15 kDlafvtvevvDknGnl 31  
                        +la v ++v D+ Gn+
       KOO24817.1 1772 GELATVSIKVHDRFGNV 1788
                       6899***********97 PP

  == domain 2  score: 4.1 bits;  conditional E-value: 0.031
  Glyco_hydro2_C5    9 elkadgkDlafvtvevvDknGnlvpnadnevtf 41  
                       e +ad +++++v ++++D+ Gn v++  ++++ 
       KOO24817.1 2035 EAAADVNEMCMVLLTIIDRYGNKVTKGGHRIEA 2067
                       67899********************99999875 PP

  == domain 3  score: 4.4 bits;  conditional E-value: 0.026
  Glyco_hydro2_C5   23 evvDknGnlvpnadnevtfeveGpGelvgvd 53  
                       +++D  Gn+    ++ v +ev G+++l+gv 
       KOO24817.1 3460 QIFDVSGNPFDALQQCVAIEVMGNADLAGVR 3490
                       789**************************96 PP

>> TFIIIC_delta  Transcription factor IIIC subunit delta N-term
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.6   0.1         7     9e+03      94     125 ..    4057    4089 ..    4042    4098 .. 0.68
   2 ?   -3.5   0.1       6.7   8.6e+03      99     125 ..    4164    4191 ..    4127    4200 .. 0.74
   3 ?   10.3   0.1   0.00039       0.5      95     125 ..    4351    4391 ..    4291    4401 .. 0.77

  Alignments for each domain:
  == domain 1  score: -3.6 bits;  conditional E-value: 7
  TFIIIC_delta   94 aqsqvvaaaWSPlgLsknrrClLav.LtttgeL 125 
                    ++ + +++   ++ L+  + C+Lav L t+ +L
    KOO24817.1 4057 TNTTLTQLNLNSNKLGDAGGCALAVaLQTNTTL 4089
                    55555566666788999999**99746666666 PP

  == domain 2  score: -3.5 bits;  conditional E-value: 6.7
  TFIIIC_delta   99 vaaaWSPlgLsknrrClLav.LtttgeL 125 
                    +++   ++ L+  + C+Lav L t+++L
    KOO24817.1 4164 TQLNLNSNKLGDAGGCALAVaLQTNMTL 4191
                    55555578899999****9757787777 PP

  == domain 3  score: 10.3 bits;  conditional E-value: 0.00039
  TFIIIC_delta   95 q.........sqvvaaaWSPlgLsknrrClLav.LtttgeL 125 
                    q         + +va+ WS++ L+  + C+Lav L t+ +L
    KOO24817.1 4351 QldlggnelgAEIVAMRWSSNKLGDAGGCALAVaLQTNTTL 4391
                    144555555689********************846666665 PP

>> Miff  Mitochondrial and peroxisomal fission factor Mff
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.8   9.2     0.007       8.9     101     230 ..    1076    1217 ..    1075    1240 .. 0.66

  Alignments for each domain:
  == domain 1  score: 5.8 bits;  conditional E-value: 0.007
        Miff  101 rpldfldlekaasasdeneevrssgrlrrersasen.aavrqngqlvrn..dsivtpsae.qvrvcppllsped....ganlysargilsliqsttr 189 
                  rp+ + d++++++ ++e e++ ++ r r+e+ ++++ +a++ n+q +++  ds+v + +  +++ +p+  s+ d    +++  +++g   + + +tr
  KOO24817.1 1076 RPYRVKDMNEEKRRQEEAERAAEELRQRKEKGKKDKdKAKKPNEQTSEAlaDSTVHNAEGmKLEASPAASSAVDpsgtDVEGVASEGTGASTKASTR 1172
                  68888999999999*****99999999999877666488888888887622544443333455666665555557855555568899999999**** PP

        Miff  190 rayqqvlevldenr....lrggsaskssslskhdslreelstlds 230 
                  ra +q  ++    r    +++ + ++ s++++ ++ r+++   +s
  KOO24817.1 1173 RARTQRAQRSRSARktarAKTSQGQNASESPDTEASRAARQLASS 1217
                  *99999988666665655333444444444444455554444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (4445 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1159  (0.0646439); expected 358.6 (0.02)
Passed bias filter:                      517  (0.028836); expected 358.6 (0.02)
Passed Vit filter:                       100  (0.00557756); expected 17.9 (0.001)
Passed Fwd filter:                        27  (0.00150594); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              14  [number of targets reported over threshold]
# CPU time: 2.14u 0.33s 00:00:02.47 Elapsed: 00:00:00.59
# Mc/sec: 22732.19
//
Query:       KOO24818.1  [L=700]
Description: oxidoreductase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.7e-13   49.8   0.0    3.6e-08   33.1   0.0    2.4  2  adh_short     short chain dehydrogenase
    3.1e-10   40.0   0.0    7.2e-05   22.5   0.0    2.5  2  adh_short_C2  Enoyl-(Acyl carrier protein) reductase
  ------ inclusion threshold ------
       0.13   12.0   1.1       0.23   11.2   1.1    1.3  1  Pox_Ag35      Pox virus Ag35 surface protein


Domain annotation for each model (and alignments):
>> adh_short  short chain dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.1   0.0   6.1e-12   3.6e-08       2      90 ..     313     404 ..     312     418 .. 0.85
   2 !   14.1   0.1   3.9e-06     0.023     131     183 ..     582     637 ..     579     649 .. 0.83

  Alignments for each domain:
  == domain 1  score: 33.1 bits;  conditional E-value: 6.1e-12
                 EEEEESTTSHHHHHHHHHHHHTT-EEEEEESCH.HHHHHHHHHHHHT...TSEEEEEE-TTTSHHHHHHHHHHHHHHHSSESEEEE---SS-- CS
   adh_short   2 vvlvtGassGIGraiakelakeGakvvvvdrse.ekleevakelkee...gakalaiqvDvtdreevealvekavkklgkldvLvnNAGitgs 90 
                 v+lvtGa   IG  i  +l++ G++v+++ r + + +++ a+e  ++   + ++++i +D++d + +eal ++    + +ld+++nNA  t +
  KOO24818.1 313 VALVTGARVKIGFRITLKLLRCGCEVIATTRFPiDSVRRFAAEE-DHprwQHRLHIIGADLRDLKGLEALCDALPRLVRRLDIIINNACQTVR 404
                 89**************************7776514455555554.34478999***********************************88554 PP

  == domain 2  score: 14.1 bits;  conditional E-value: 3.9e-06
                 EEEEEEGGG...TSB-TTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBS CS
   adh_short 131 IvnvsSvag...kvpvagvaaYsAsKaavagltrslakelaptgirvnavaPGlvd 183
                 Ivnvs + g   k + +  +    +Kaa++++tr+ a ++a+ +i  +av +G ++
  KOO24818.1 582 IVNVSAMEGrfyKFKQPTHPHTNMAKAALNMMTRTSAADYAKGQIYMTAVDTGWIN 637
                 9999999994333445556666789**************************99886 PP

>> adh_short_C2  Enoyl-(Acyl carrier protein) reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.0   2.3e-06     0.014       4      80 ..     321     402 ..     318     432 .. 0.80
   2 !   22.5   0.0   1.2e-08   7.2e-05     123     183 ..     582     645 ..     569     666 .. 0.80

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 2.3e-06
                   TSHHHHHHHHHHHTT-EEEEEESSGGHHHHHHHHHHHTT.....SEE..EE--TTSHHHHHHHHHHHHHHHSSEEEEEE----- CS
  adh_short_C2   4 sgIGraiAkalaeeGaevvltdlneeakkrveelaeelg.....aev..lecDVtdeeqvealveevvekfgklDilvnnagia 80 
                     IG+ i  +l + G+ev++t +   +  +v+++a+e +     +++  + +D +d + +eal +++ + + +lDi++nna  +
    KOO24818.1 321 VKIGFRITLKLLRCGCEVIATTRFPID--SVRRFAAEEDhprwqHRLhiIGADLRDLKGLEALCDALPRLVRRLDIIINNACQT 402
                   569***************999877666..45555444432223244245*******************************9765 PP

  == domain 2  score: 22.5 bits;  conditional E-value: 1.2e-08
                   EEEEEEGGGTSB...STTTTHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEE--BHCTGGGGST CS
  adh_short_C2 123 ivnlssvgaerv...vpnynaygaaKaalealtrylAvelgpkgiRvNavspgpikTlaasgik 183
                   ivn+s + ++ +    p + + ++aKaal+ +tr+ A+++++ +i   av  g+i+ +  ++ +
    KOO24818.1 582 IVNVSAMEGRFYkfkQPTHPHTNMAKAALNMMTRTSAADYAKGQIYMTAVDTGWINDEKPAAQA 645
                   88999998887654456677***********************************976633333 PP

>> Pox_Ag35  Pox virus Ag35 surface protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   1.1   3.9e-05      0.23      55     133 ..      26     104 ..      10     125 .. 0.59

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 3.9e-05
    Pox_Ag35  55 krattprkkpakkekkkkeeekeeaaeeeeledseedeenendedeseesvqaeeeksnes..teddad.eldeSdLkvate 133
                   + +p k ++ k   +++++++ a    e+++   de++e+ded+ +  ++a ++++++   ++d  d ++    Lkv+++
  KOO24818.1  26 TATVAPAKAAPAKPAVRAPARSQPASLLPEADE---DEDDEEDEDDEQMLPSARQGATASIfgDVDVDDlRTTIATLKVVAQ 104
                 346788888888888888888877776544444...4444444444444444444444443223443331334455666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (700 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       568  (0.0316805); expected 358.6 (0.02)
Passed bias filter:                      409  (0.0228122); expected 358.6 (0.02)
Passed Vit filter:                        60  (0.00334653); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.63u 0.28s 00:00:00.91 Elapsed: 00:00:00.44
# Mc/sec: 4784.44
//
Query:       KOO24819.1  [L=749]
Description: poly ADP-ribose polymerase 2 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.4e-59  200.9   0.0    2.4e-59  200.2   0.0    1.3  1  PARP      Poly(ADP-ribose) polymerase catalytic domain
      2e-37  128.3   0.0    3.3e-37  127.6   0.0    1.4  1  PARP_reg  Poly(ADP-ribose) polymerase, regulatory domain
    1.6e-18   66.5   0.5      4e-18   65.2   0.3    1.8  2  WGR       WGR domain
    1.8e-09   37.1   0.0    4.8e-09   35.8   0.0    1.8  1  SAP       SAP domain
    7.1e-06   26.5   0.0    1.6e-05   25.4   0.0    1.7  1  WWE       WWE domain


Domain annotation for each model (and alignments):
>> PARP  Poly(ADP-ribose) polymerase catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  200.2   0.0   6.7e-63   2.4e-59       7     195 .]     546     746 ..     541     746 .. 0.93

  Alignments for each domain:
  == domain 1  score: 200.2 bits;  conditional E-value: 6.7e-63
                 HHHHHHHTS-TTTT.EEEEEEEEEEEEETTHHHHCGCCGGSS-EEEEEEEE-GGGHHHHHHH-S--S-TTS-GGGSTTSSSEEEBSSHHHHHGGG--BS CS
        PARP   7 iekylkktldstha.yklkileifrvqregeaerfqekkklrnrrlLfHGsrltnvasilsqGLriappeapvtGymfGkGiYfAddaskSanYcktse 104
                 + +yl++t++sth+ y+l +++ f+++regea rf++    +nr+lL+HGsrltn+++i+sqGLriappeap tGymfGkG+YfAd++skSanYc++s+
  KOO24819.1 546 LNRYLQNTHASTHNtYSLVLEQAFEIEREGEAARFTSA--IGNRQLLWHGSRLTNWCGIISQGLRIAPPEAPSTGYMFGKGVYFADMSSKSANYCFASR 642
                 689***********9*********************97..9********************************************************** PP

                 SS-EEEEEEEEEE--SEEEESS--T.G..CCGGTT-SEEEE-EEEEE...GG.EEETT....E--S-EEE-S--SSS...EEE-EEEESSGGGEEEEEE CS
        PARP 105 kkgsglllLaeValGdikeltkady.l..ekakkgkksvkgkgktep...esivekdg....vPlgkssatkyesse...leyneyvvydkeqvrlkYL 190
                 +++ +++lL+eValG+ +  t+a+y +  ++ k++ +s++g+g+t+p   e+++   +    vPlgk+ ++   + +   l yne++vyd++qvr +Y+
  KOO24819.1 643 QEPAAVMLLSEVALGQQYVRTAAEYeAekSCRKAKADSTWGQGRTAPdpsEDTTLPGEphvkVPLGKGAKNTVLGDQptsLLYNEFIVYDTSQVRQRYV 741
                 ****************9999*****9976778999************887555555558899******777776666689******************* PP

                 EEEEE CS
        PARP 191 levkf 195
                 l+vkf
  KOO24819.1 742 LQVKF 746
                 **986 PP

>> PARP_reg  Poly(ADP-ribose) polymerase, regulatory domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  127.6   0.0   9.2e-41   3.3e-37       1     136 []     367     526 ..     367     526 .. 0.93

  Alignments for each domain:
  == domain 1  score: 127.6 bits;  conditional E-value: 9.2e-41
    PARP_reg   1 skLpkevqeLiklifdvelmkkamkeleiDlkkmPLGkLskeqikkgyevLkelselikkkekae....................k...lkeklldlsn 76 
                 skL+++vq+++++i d+++m+++m+e+ +D  kmPLGkL+k++i +gye+L+el e+i+++  a                     +   + +++++lsn
  KOO24819.1 367 SKLDPRVQSFVAQIADIRMMERTMREIGFDPAKMPLGKLKKKTILDGYEALRELGEVIRSNGGAVaggasgkqlegksmgavdvdAsspAYKQIVELSN 465
                 8*********************************************************99998779999999999998887776515679********* PP

    PARP_reg  77 eFytlIPhdfgrkr.ppvidteeelkkklellesLsdievaskllkaekeekeehpldrhY 136
                 +Fy++IPh+  +++  p+i+t+++lk+k+++le+L +ie+as++++++    + hp+d +Y
  KOO24819.1 466 RFYSVIPHTTEKRQrLPPIETAQMLKDKIDMLEALGEIELASRVIDTKGLGCDVHPVDARY 526
                 ********88765547*******************************9999999****999 PP

>> WGR  WGR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.2   0.3   1.1e-21     4e-18       2      79 ..     242     322 ..     241     323 .. 0.88
   2 ?   -3.8   0.0       3.9   1.4e+04      12      20 ..     462     470 ..     458     477 .. 0.77

  Alignments for each domain:
  == domain 1  score: 65.2 bits;  conditional E-value: 1.1e-21
                 EEEEEEEETTTTEEEEEEEEE.EE-TT.S-EEEEEE-S-TTS-..---EEEEESSHHHHHHHHHHHHHHHHSS-STTGGG- CS
         WGR   2 dlyleqtdiarnsnkFYkiqlleddlf.ggyslfvrWGRiGtr..GqtklksfdseeeAikefeklfaeKtkkgyeereef 79 
                 d++l+qtdi++n+nk+Y+iqlle d    +y+++ rWGR+G++   q++      +  A+k+fe +f++Ktk++++er +f
  KOO24819.1 242 DALLNQTDIGQNKNKYYIIQLLETDATpPQYYTWNRWGRVGEErnLQNACRGPMGLGPAKKDFESKFHDKTKNKWQERHDF 322
                 789********************9987257***********76346666666669***********************987 PP

  == domain 2  score: -3.8 bits;  conditional E-value: 3.9
                 TTEEEEEEE CS
         WGR  12 rnsnkFYki 20 
                 + sn+FY +
  KOO24819.1 462 ELSNRFYSV 470
                 5689***86 PP

>> SAP  SAP domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.8   0.0   1.3e-12   4.8e-09       5      34 ..       3      32 ..       3      33 .. 0.97

  Alignments for each domain:
  == domain 1  score: 35.8 bits;  conditional E-value: 1.3e-12
                -HHHHHHHHHHTT--TTS-HHHHHHHHHHH CS
         SAP  5 tVaeLKeeLkkrGLptsGkKaeLieRLkey 34
                tVaeL++eL++ G +tsG+Ka+L++RL e+
  KOO24819.1  3 TVAELRAELAAIGEDTSGLKADLVARLAEA 32
                8**************************986 PP

>> WWE  WWE domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.4   0.0   4.4e-09   1.6e-05       2      68 .]      57     133 ..      56     133 .. 0.75

  Alignments for each domain:
  == domain 1  score: 25.4 bits;  conditional E-value: 4.4e-09
                 EEEEEEET....-TCEEE--HHHHHHHHHHHHTT-SEEEHHHHTTSTTEEEETTTT..........EEEETT.T--EEEEEE CS
         WWE   2 vvWewedd....ggeWeeYspevsellEeayqkkkksvelsfsvagapYtvdfnsm..........vQtnkg.tgtsrrVrR 68 
                 ++W+w +d    ++eW++Y+p+v++ lE+a +++ k+ ++s        +vd++            +Q++ +  + +r+V+R
  KOO24819.1  57 AAWFWASDksptEREWTPYPPDVTAALEAALKAGAKEEKISD-----YHRVDLSGSgpasssvlhfFQYRLDnAKLQRPVCR 133
                 68**********99****************999766665544.....45688777444445555557777765677777777 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (749 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       447  (0.0249317); expected 358.6 (0.02)
Passed bias filter:                      363  (0.0202465); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.59u 0.27s 00:00:00.86 Elapsed: 00:00:00.43
# Mc/sec: 5243.36
//
Query:       KOO24820.1  [L=323]
Description: DNAj-like subfamily c member 28-like protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    2.1e-21   75.9   2.2    6.7e-21   74.2   0.2    2.7  3  DUF1992      Domain of unknown function (DUF1992)
  ------ inclusion threshold ------
      0.075   11.9   0.0       0.11   11.3   0.0    1.2  1  DUF5423      Family of unknown function (DUF5423)
        7.1    6.8  12.1       0.35   11.0   1.7    2.8  3  Cep57_CLD_2  Centrosome localisation domain of PPC89


Domain annotation for each model (and alignments):
>> DUF1992  Domain of unknown function (DUF1992)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   0.0       1.9   1.1e+04       9      16 ..       6      13 ..       5      20 .. 0.77
   2 ?   -0.2   0.0      0.19   1.1e+03      42      66 ..      68      92 ..      56      94 .. 0.84
   3 !   74.2   0.2   1.1e-24   6.7e-21       2      69 ..     130     196 ..     129     197 .. 0.89

  Alignments for each domain:
  == domain 1  score: -3.4 bits;  conditional E-value: 1.9
     DUF1992  9 AierGeFd 16
                A erGe++
  KOO24820.1  6 ALERGELQ 13
                88999984 PP

  == domain 2  score: -0.2 bits;  conditional E-value: 0.19
     DUF1992 42 anrilknagvlPpeielrkeieelk 66
                 ++ l++agv P ++  r+++++++
  KOO24820.1 68 HRQYLTDAGVGPGTMFQRQQAAQQR 92
                4678999*****9999999998876 PP

  == domain 3  score: 74.2 bits;  conditional E-value: 1.1e-24
     DUF1992   2 aEerIreAierGeFdnlpgrGKPLplddendplvpee.erlanrilknagvlPpeielrkeieelkell 69 
                 +E+rI+eA+  G+Fdnlpg+GKPL++++  + + + + + +a+rilknag++P ++e rkei+++ ++ 
  KOO24820.1 130 VENRIQEAMSTGAFDNLPGAGKPLKREE--NVFEQISgDAMAHRILKNAGIAPGWVEQRKEIRAALAKA 196
                 9*************************88..6776654289999********************998765 PP

>> DUF5423  Family of unknown function (DUF5423)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   1.9e-05      0.11     140     182 ..      84     125 ..      77     151 .. 0.82

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 1.9e-05
     DUF5423 140 nreqwkqqkkleqvelaaweshlpkeskssaleevrysprlmk 182
                 +r+q  qq++le  +  a++ h+p+e+k++   e r s   m+
  KOO24820.1  84 QRQQAAQQRRLEIAQSNAFDYHMPQEAKAAREHE-RRSRAKMR 125
                 799*************************866555.55555554 PP

>> Cep57_CLD_2  Centrosome localisation domain of PPC89
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.1       1.3   7.6e+03      46      60 ..       8      22 ..       5      36 .. 0.58
   2 ?    2.4   0.5     0.028   1.7e+02      22      45 ..     116     139 ..     110     141 .. 0.78
   3 ?   11.0   1.7   5.9e-05      0.35      37      62 ..     249     274 ..     247     281 .. 0.87

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 1.3
  Cep57_CLD_2 46 elneLkaevealrkE 60
                 e  eL+a ++ ++++
   KOO24820.1  8 ERGELQADLDLDAGD 22
                 556666666666555 PP

  == domain 2  score: 2.4 bits;  conditional E-value: 0.028
  Cep57_CLD_2  22 heeelkrLnkERdsalrqLgvAye 45 
                  he  +++ ++E+d +++++++A +
   KOO24820.1 116 HERRSRAKMREHDVVENRIQEAMS 139
                  5555555578***********986 PP

  == domain 3  score: 11.0 bits;  conditional E-value: 5.9e-05
  Cep57_CLD_2  37 lrqLgvAyeelneLkaevealrkELk 62 
                   r+L++A ++++eLkae ++lr E +
   KOO24820.1 249 TRALHEAPQRVQELKAERRSLRAEAE 274
                  589*******************9954 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (323 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1002  (0.0558871); expected 358.6 (0.02)
Passed bias filter:                      566  (0.031569); expected 358.6 (0.02)
Passed Vit filter:                        50  (0.00278878); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.50u 0.23s 00:00:00.73 Elapsed: 00:00:00.40
# Mc/sec: 2442.21
//
Query:       KOO24821.1  [L=286]
Description: hypothetical protein Ctob_005533 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
  ------ inclusion threshold ------
      0.032   14.2   0.4      0.059   13.4   0.4    1.4  1  Alpha-2-MRAP_N  Alpha-2-macroglobulin RAP, N-terminal domain
      0.082   12.9   1.4        2.5    8.1   0.9    2.5  3  DUF218          DUF218 domain
       0.12   13.0   0.1       0.28   11.9   0.1    1.5  1  DUF4387         Domain of unknown function (DUF4387)


Domain annotation for each model (and alignments):
>> Alpha-2-MRAP_N  Alpha-2-macroglobulin RAP, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.4   9.9e-06     0.059      53     106 ..      85     139 ..      77     146 .. 0.87

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 9.9e-06
  Alpha-2-MRAP_N  53 ltevklksLysdLkihdkeelawkklkaegldkdgekEae.lrrkligilskYgl 106
                       e + ++L  +   +dk+ ++  ++ a+++ k  e Eae lr+ ++g+l+ Y++
      KOO24821.1  85 YREARARELAAERSSQDKQHENADRVSAQRMAKRAEAEAEfLRKWMQGVLKDYDV 139
                     5678889999999**************************95677899******98 PP

>> DUF218  DUF218 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.0      0.46   2.8e+03      94     106 ..       2      24 ..       1      46 [. 0.55
   2 ?    8.1   0.9   0.00042       2.5      88     118 ..      47      81 ..      25      96 .. 0.65
   3 ?    3.6   0.1      0.01        62      38     106 ..      83     197 ..      70     233 .. 0.67

  Alignments for each domain:
  == domain 1  score: -1.7 bits;  conditional E-value: 0.46
      DUF218  94 mpRalllfrkag..........a 106
                 ++Ra++l+++a+          +
  KOO24821.1   2 SRRAAWLAERASlkmidlgkgkT 24 
                 68999999998433333333332 PP

  == domain 2  score: 8.1 bits;  conditional E-value: 0.00042
      DUF218  88 VTsafHmpRalllfrkag.....aptpsaealsase 118
                 VT + H +Ra++++ +++     + t + +++++++
  KOO24821.1  47 VTEDLHARRAAYVASRVEaakskVRT-EGTSMYQTR 81 
                 9****************644433211.222222222 PP

  == domain 3  score: 3.6 bits;  conditional E-value: 0.01
      DUF218  38 edvseaeamaeylre....lgvp.eeailledrsrnTeenarfskell...............................ker.sillVTsafHmpRall 99 
                 e+++ea+a +  +++    ++ + ++++  ++ ++  e +a+f+++++                               +++ ++ll T ++ + R   
  KOO24821.1  83 EEYREARARELAAERssqdKQHEnADRVSAQRMAKRAEAEAEFLRKWMqgvlkdydvegtastmplrmgsrswlypenmDKKlNMLLMTPKSPVDRWNG 181
                 566666663333333222233344566888888888888888888888888888888888888888888888888888854668999999999999999 PP

      DUF218 100 lfrkag.........a 106
                 ++r+ +         a
  KOO24821.1 182 IARRNQqeeqdeainA 197
                 9988743445555441 PP

>> DUF4387  Domain of unknown function (DUF4387)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.1   4.7e-05      0.28      26      94 ..      81     148 ..      76     151 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 4.7e-05
     DUF4387  26 dkeaYervkesklltkeliaklykieeedivkivefdpalaiKvtikRpvasGslgerDvygaqqhapL 94 
                 ++e+Y++++++  l +e  ++  + e++d v++ ++ +     + + R++++G l + Dv g+   +pL
  KOO24821.1  81 RREEYREARAR-ELAAERSSQDKQHENADRVSAQRMAKRAEAEAEFLRKWMQGVLKDYDVEGTASTMPL 148
                 56788888776.566667777777888889999999999999***********************9998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (286 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1271  (0.0708907); expected 358.6 (0.02)
Passed bias filter:                      533  (0.0297284); expected 358.6 (0.02)
Passed Vit filter:                        47  (0.00262145); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.44u 0.25s 00:00:00.69 Elapsed: 00:00:00.37
# Mc/sec: 2330.42
//
Query:       KOO24822.1  [L=141]
Description: hypothetical protein Ctob_005532 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
     0.0031   17.5   0.1     0.0073   16.3   0.1    1.8  1  Thioredoxin  Thioredoxin
  ------ inclusion threshold ------
      0.099   12.9   0.0       0.11   12.8   0.0    1.1  1  RNA_ligase   RNA ligase


Domain annotation for each model (and alignments):
>> Thioredoxin  Thioredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.1   8.1e-07    0.0073      17      48 ..      29      60 ..      12     118 .. 0.70

  Alignments for each domain:
  == domain 1  score: 16.3 bits;  conditional E-value: 8.1e-07
                 TSSEEEEEEE-TTSHHHHCHHHHHHHHHHHCT CS
  Thioredoxin 17 ekklvlveFyApwCghCkalaPeleklaeelk 48
                 e  l++ve yA+wCg+  a++  l ++   + 
   KOO24822.1 29 EGMLHIVEIYAEWCGPSDAMKNPLSNFHISYV 60
                 46789***********9999877776665554 PP

>> RNA_ligase  RNA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0   1.2e-05      0.11      57     108 ..      27      91 ..       5     137 .. 0.64

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 1.2e-05
                 .....ECCEEEEEEEES.SS..TT.SS........EEEEEEEEEEE.CTTBECE--HHHHHHHHH CS
  RNA_ligase  57 a....neelilyGElighsikygg.lpk.......efyvFdifdir.dkeeqrylspdevealak 108
                 a     + +++y E++g+s  +++ l +       ef   +++ +  + +++ y spde + +++
  KOO24822.1  27 AsegmLHIVEIYAEWCGPSDAMKNpLSNfhisyvcEFKKLRLWKMCaNLKNENYSSPDEQKLFER 91 
                 2333434599*******888777754446677555566667777777777999999999988888 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (141 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       348  (0.0194099); expected 358.6 (0.02)
Passed bias filter:                      300  (0.0167327); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.34u 0.23s 00:00:00.57 Elapsed: 00:00:00.36
# Mc/sec: 1188.25
//
Query:       KOO24823.1  [L=500]
Description: hypothetical protein Ctob_005535 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (500 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2017  (0.112499); expected 358.6 (0.02)
Passed bias filter:                      461  (0.0257125); expected 358.6 (0.02)
Passed Vit filter:                        68  (0.00379274); expected 17.9 (0.001)
Passed Fwd filter:                        19  (0.00105974); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.80u 0.27s 00:00:01.07 Elapsed: 00:00:00.46
# Mc/sec: 3265.53
//
Query:       KOO24824.1  [L=867]
Description: hypothetical protein Ctob_005534 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
        1.9    8.8   8.7       0.29   11.4   1.8    3.1  3  KxDL      Uncharacterized conserved protein


Domain annotation for each model (and alignments):
>> KxDL  Uncharacterized conserved protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   0.1     0.091   1.6e+03      30      53 ..     268     291 ..     265     298 .. 0.80
   2 ?   11.4   1.8   1.6e-05      0.29      13      63 ..     307     357 ..     300     370 .. 0.83
   3 ?   -2.5   0.0      0.37   6.6e+03      34      54 ..     396     416 ..     365     424 .. 0.59

  Alignments for each domain:
  == domain 1  score: -0.6 bits;  conditional E-value: 0.091
        KxDL  30 reLlelnalsqerlaklrarfkqg 53 
                 +e++ l ++++e la+++++ + +
  KOO24824.1 268 EEMKVLVDQANEALAQMQHDCQAY 291
                 577788889999999999988765 PP

  == domain 2  score: 11.4 bits;  conditional E-value: 1.6e-05
        KxDL  13 eilalQaqtsgrlnkknreLlelnalsqerlaklrarfkqgtkllkevkkd 63 
                   +++Q+ t+g+l k++++Lle+++++++ ++ +   +++ + +  + +++
  KOO24824.1 307 GLIDAQRSTMGELAKEEERLLEMQEEANQAMKVALRALAEAKVAHADQQRN 357
                 6799*************************9999888888777666665555 PP

  == domain 3  score: -2.5 bits;  conditional E-value: 0.37
        KxDL  34 elnalsqerlaklrarfkqgt 54 
                 el ++++e l k  ++++q++
  KOO24824.1 396 ELDEEAEEALRKEASEIQQHV 416
                 344555555555555555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (867 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1791  (0.099894); expected 358.6 (0.02)
Passed bias filter:                      376  (0.0209716); expected 358.6 (0.02)
Passed Vit filter:                        54  (0.00301188); expected 17.9 (0.001)
Passed Fwd filter:                        16  (0.000892409); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.88u 0.32s 00:00:01.20 Elapsed: 00:00:00.48
# Mc/sec: 5452.34
//
Query:       KOO24825.1  [L=326]
Description: hypothetical protein Ctob_005537 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    3.3e-09   36.5  10.9    5.1e-09   35.9  10.9    1.3  1  zf-C3HC4_3   Zinc finger, C3HC4 type (RING finger)
    2.2e-05   24.2   0.0    4.2e-05   23.3   0.0    1.4  1  PDZ_6        PDZ domain
    0.00047   20.4   9.9    0.00077   19.8   9.9    1.3  1  zf-RING_2    Ring finger domain
     0.0012   18.6   8.5     0.0029   17.4   8.5    1.6  1  Prok-RING_4  Prokaryotic RING finger family 4
  ------ inclusion threshold ------
      0.018   15.4   0.0      0.043   14.2   0.0    1.6  1  PDZ          PDZ domain
       0.15   12.1   9.8       0.29   11.1   9.8    1.5  1  zf-RING_5    zinc-RING finger domain
        7.5    6.2   7.2        6.7    6.3   4.0    1.9  2  zf-SNAP50_C  snRNA-activating protein of 50kDa MW C terminal


Domain annotation for each model (and alignments):
>> zf-C3HC4_3  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.9  10.9     2e-12   5.1e-09       3      47 ..      34      83 ..      32      85 .. 0.95

  Alignments for each domain:
  == domain 1  score: 35.9 bits;  conditional E-value: 2e-12
                SB-TTTSSSBS-EEETTEEEEEE-HHHHHHHHH......TT-B-TTT--B- CS
  zf-C3HC4_3  3 eeCviClerprnvvllpCgHlvlCeeCaekllk......rkkkCpiCrrpi 47
                +eC++C+e+pr++ +  CgHl++Ce+C  +l +       ++ Cp+Cr++i
  KOO24825.1 34 TECMVCMEAPRKIRF-ACGHLACCEKCTADLIAtadnrvPQNACPMCRAEI 83
                68*************.9**************9999999999********98 PP

>> PDZ_6  PDZ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.3   0.0   1.6e-08   4.2e-05       2      51 ..     161     207 ..     160     211 .. 0.87

  Alignments for each domain:
  == domain 1  score: 23.3 bits;  conditional E-value: 1.6e-08
       PDZ_6   2 VtaVdpgsPAdrAGlrvGDiilsvNGqpveglsladvaallrgsagesvv 51 
                 V+ V  gsPAd  G   G +il vNG++v+g+s a+v +  +   +++++
  KOO24825.1 161 VRDVSFGSPADDLGCPTGGVILHVNGVSVIGMSRAEVLQRTQ---ERPLR 207
                 677888********************************9999...55444 PP

>> zf-RING_2  Ring finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.8   9.9     3e-07   0.00077       2      44 .]      35      80 ..      34      80 .. 0.86

  Alignments for each domain:
  == domain 1  score: 19.8 bits;  conditional E-value: 3e-07
   zf-RING_2  2 eCpICleelssadsvlllpCgHv.fhreClerwlrssst......CPlCr 44
                eC++C+   + +++++   CgH  ++++C ++++++  +      CP+Cr
  KOO24825.1 35 ECMVCM---EAPRKIRFA-CGHLaCCEKCTADLIATADNrvpqnaCPMCR 80
                9****8...777889988.***989*****998777666789999****9 PP

>> Prok-RING_4  Prokaryotic RING finger family 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.4   8.5   1.1e-06    0.0029       1      40 [.      36      83 ..      36      87 .. 0.83

  Alignments for each domain:
  == domain 1  score: 17.4 bits;  conditional E-value: 1.1e-06
  Prok-RING_4  1 CvlCgeqekkailepCgHl.vCkeCfdsk....dls.....sCPlCqrri 40
                 C++C e+++k++++ CgHl  C++C  +     d +     +CP+C+ +i
   KOO24825.1 36 CMVCMEAPRKIRFA-CGHLaCCEKCTADLiataD-NrvpqnACPMCRAEI 83
                 **********9985.****99****988755442.147778******987 PP

>> PDZ  PDZ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   0.0   1.7e-05     0.043       8      72 ..     139     203 ..     134     210 .. 0.81

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 1.7e-05
                 TTSESSEEEEEETTSSSSSSEEEEEECTTSHHHHHTSSTTEEEEEETTEETTTSHHHHHHHHHHT CS
         PDZ   8 grgglGfslkggsdqrgdkgifvsevlpggaaeadglkvGDkIlsvNgvdvenvsheeavqaikg 72 
                 + g++G+sl+      +     v +v+ g++a+  g   G +Il vNgv+v ++s  e+ q +++
  KOO24825.1 139 ESGSVGISLARPWRGPQGLMHSVRDVSFGSPADDLGCPTGGVILHVNGVSVIGMSRAEVLQRTQE 203
                 677788888875555566667899*****8888888********************999988765 PP

>> zf-RING_5  zinc-RING finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   9.8   0.00011      0.29       2      43 ..      36      80 ..      34      81 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00011
   zf-RING_5  2 CnkCfeklskeekfyltsCgHi.fCekClkkll......ekeavCpiCr 43
                C +C+e      + +  +CgH  +CekC   l        +++ Cp+Cr
  KOO24825.1 36 CMVCMEAP----RKIRFACGHLaCCEKCTADLIatadnrVPQNACPMCR 80
                78888888....445569***98999*****99***************9 PP

>> zf-SNAP50_C  snRNA-activating protein of 50kDa MW C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.9   0.2      0.12   3.2e+02     131     158 ..      18      45 ..      12      50 .. 0.84
   2 ?    6.3   4.0    0.0026       6.7     150     176 ..      54      80 ..      40      82 .. 0.89

  Alignments for each domain:
  == domain 1  score: 0.9 bits;  conditional E-value: 0.12
  zf-SNAP50_C 131 drsaYPlrlfkkklrrkkCkvCekfsak 158
                  +r++ Pl+   + +r ++C+vC + + k
   KOO24825.1  18 TRDVLPLTAAISIKRPTECMVCMEAPRK 45 
                  56778999999999********988765 PP

  == domain 2  score: 6.3 bits;  conditional E-value: 0.0026
  zf-SNAP50_C 150 kvCekfsakwvvlndkllpedpsyfCd 176
                   +Cek +a+ + + d+++p++ + +C+
   KOO24825.1  54 ACCEKCTADLIATADNRVPQNACPMCR 80 
                  59************************7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (326 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       505  (0.0281667); expected 358.6 (0.02)
Passed bias filter:                      307  (0.0171231); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.46u 0.24s 00:00:00.70 Elapsed: 00:00:00.42
# Mc/sec: 2323.81
//
Query:       KOO24826.1  [L=261]
Description: hypothetical protein Ctob_005536 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.6e-10   40.9   0.0    2.1e-10   40.5   0.0    1.2  1  NT-C2          N-terminal C2 in EEIG1 and EHBP1 proteins
  ------ inclusion threshold ------
      0.025   14.7   0.0      0.055   13.6   0.0    1.5  1  LSM_int_assoc  LSM-interacting associated unstructured


Domain annotation for each model (and alignments):
>> NT-C2  N-terminal C2 in EEIG1 and EHBP1 proteins
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.5   0.0   2.3e-14   2.1e-10       4     142 ..      10     152 ..       7     156 .. 0.82

  Alignments for each domain:
  == domain 1  score: 40.5 bits;  conditional E-value: 2.3e-14
       NT-C2   4 rpkflldlkihelsnipq....ssgelyvkwrrkdskgtsssgttekakvqngraewneelkipvtlfln.kkgk.kfeeKllelsvysvlskskkk.. 94 
                 ++k+++++++ ++s         + +  v w+++d+      +t   a  + g+a+++eel++++t++ + ++g  ++++K+ ++++       +kk  
  KOO24826.1  10 KFKYHFSVQVRSVSLRDGiallPDVRYRVLWKKGDRA----ASTRDFAASSVGVASYDEELSLVCTMYRDpDRGAaQYLPKEATFTLLCGR--EGKKtg 102
                 677777777777776555666788899999******9....89***************************7444479*************5..444447 PP

       NT-C2  95 ..kelGkvelnlaeyvnedeepttsrfllkkskkvnsilslsiqlkllrg 142
                   + lG+++++la +++++  +    + l ++      l l+++   lr+
  KOO24826.1 103 sfRPLGRAKVDLARHASLEAVSEELMLVLLHDGVPVGDLVLTLSSRWLRN 152
                 99***************998888777777777666777777777666665 PP

>> LSM_int_assoc  LSM-interacting associated unstructured
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.0   6.2e-06     0.055      15      45 ..     218     248 ..     210     260 .. 0.85

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 6.2e-06
  LSM_int_assoc  15 ralgalvprQvyGaRGkGRTQlsllPRaLqR 45 
                      l a++  Q  G RG GR   +l+PR L+ 
     KOO24826.1 218 EELEAMIEEQQRGKRGAGRVLGALMPRHLEL 248
                    5567999********************9975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (261 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       597  (0.033298); expected 358.6 (0.02)
Passed bias filter:                      448  (0.0249875); expected 358.6 (0.02)
Passed Vit filter:                        55  (0.00306766); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.42u 0.27s 00:00:00.69 Elapsed: 00:00:00.40
# Mc/sec: 1977.86
//
Query:       KOO24827.1  [L=836]
Description: hypothetical protein Ctob_005538 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.1e-35  123.6   0.1    3.1e-19   69.2   2.6    4.2  3  Cnd2         Condensin complex subunit 2
     0.0025   17.8  25.3     0.0025   17.8  25.3    2.3  2  Trypan_PARP  Procyclic acidic repetitive protein (PARP)


Domain annotation for each model (and alignments):
>> Cnd2  Condensin complex subunit 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.2   2.6   3.5e-23   3.1e-19      14     269 ..      32     320 ..       9     381 .. 0.79
   2 !   16.9   0.0   2.2e-07     0.002     460     597 ..     513     650 ..     495     661 .. 0.63
   3 !   28.0   0.0   9.5e-11   8.5e-07     668     748 ..     663     726 ..     662     728 .. 0.85

  Alignments for each domain:
  == domain 1  score: 69.2 bits;  conditional E-value: 3.5e-23
        Cnd2  14 iplNDDeaEkakrrksrqalheaqinqikaaatparrrksaaveeaassssprtPktpmkrvpilanfeewmklatdNKInakNsW.nlaLIDyfhdms 111
                 +++NDDe+E++++ ++ + ++ a++++    +tp r+++                         l+ + + mk   dNK+n+kN++ n   ID ++ m 
  KOO24827.1  32 LDENDDENERQEAAQAAVQKQLAKVKSPL-KETPGRQER------------------------RLEGYGDAMKRFMDNKVNKKNAFlNAYNIDDMDRM- 104
                 67888888888888888776666665555.344433222........................39********************966778*******. PP

        Cnd2 112 LLkegd..s.....vNFqkAsctLDgcvKIYtsRVDSvatetgkllsgLadstekkkkdneeeedeeegdeeeeeeegedgeek............... 188
                  +++ d  s       Fqk +  LD+++ I + RVD+      +l   + + ++ k +d ++ee+eeeg +    +++ +g+ +               
  KOO24827.1 105 -IRDMDrnStggtiEIFQKGAMMLDAGSRIIAARVDALEMQQERLRRMIDRPGA-KVDDPADEEEEEEGAKAG--AVDLEGAPEwaeasvveemtalma 199
                 .999995415567667****************************9988877774.444333344333444433..46778877789999********** PP

        Cnd2 189 .......................................kkkkkKkqrsseatlaksfeslqlkklelefavDPLFkkasAdfDeggakglLLNhLsi. 247
                                                        kk+kk k+++  a l+++ ++l++ k el  + DP+F ++sA ++  ga+gl+   L   
  KOO24827.1 200 eakktaspadmheiatqlnlsdakatelfnfvqskivkpKKPKKPKRKNPTAYLETDPSKLNMDKHELGADADPFFYRTSALYGIKGARGLMVHSLDLg 298
                 *************************************8866655566777999*********************************************9 PP

        Cnd2 248 dsegrivfDssddaedaasqte 269
                  + + +v+D+ d +  +a+ ++
  KOO24827.1 299 ADGLTLVLDARDAEVASAAARA 320
                 89999*****996655552222 PP

  == domain 2  score: 16.9 bits;  conditional E-value: 2.2e-07
        Cnd2 460 aakkkrkekepfeidFeapldesvaealftqassnsaislpkkqlkkksrn..lLPddkhfnskqLlklflkPkarlsrr....kee.veegemdeafw 551
                 a   +rk kep+++dF++ ++  ++ +   +  ++ ++ l+k+ l k + +  lL  d++ +   L  lf +P+ r+  +    + +  +++   e  +
  KOO24827.1 513 AGAGARKAKEPVTVDFSNAAALVLELEDAAALDTKGTTILTKTMLSKAKAAetLLKRDFQVQMAALETLFERPSKRIAYErhvqR-QqRQAKRRTESLF 610
                 667899***********999987777777778889999999999988777678**********************9887756642.2233444455555 PP

        Cnd2 552 akqkaeeeaa.....kedeeap.qGdyD.anffadddglpfpqdlgggddddD 597
                    + +++ a     +++  a+ +G+ D               d+ ggdd dD
  KOO24827.1 611 PDADGSQALAngpssSAEPGAAsKGAADgV-------------DAYGGDDGDD 650
                 544444433333333111111123333332.............2223444444 PP

  == domain 3  score: 28.0 bits;  conditional E-value: 9.5e-11
        Cnd2 668 kvDvrrLKeelWklieeellesaaeeeesseeaakskekeekgalkFtevmnnLkkvypkqmm.ediStslaFiclLHLANE 748
                 +vDv +LKe lW l++ +   s                   ++  +F++ +++L++++p  ++ e+iS++ aF+clLHLANE
  KOO24827.1 663 VVDVGKLKEDLWTLLQGDGAGSP------------------TRVVDFQQALHRLPERMPPPAKpESISIAQAFYCLLHLANE 726
                 59999999999999999988532..................45689**********9987654389***************9 PP

>> Trypan_PARP  Procyclic acidic repetitive protein (PARP)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.8         1   9.4e+03      78     106 ..     167     169 ..     149     195 .. 0.49
   2 !   17.8  25.3   2.8e-07    0.0025      72     120 ..     361     410 ..     351     419 .. 0.54

  Alignments for each domain:
  == domain 1  score: -3.5 bits;  conditional E-value: 1
  Trypan_PARP  78 epetepeeepepepepepepepepepepe 106
                  e+                          e
   KOO24827.1 167 EE--------------------------E 169
                  11..........................1 PP

  == domain 2  score: 17.8 bits;  conditional E-value: 2.8e-07
  Trypan_PARP  72 epepepep.etepeeepepepepepepepepepepepepepgaatlksva 120
                   p+ ep++ e epe e e e epepepepepepep pe ep  a+   va
   KOO24827.1 361 RPDGEPDDgEEEPEAELELELEPEPEPEPEPEPEPGPELEPELAAAPEVA 410
                  33444433344455555555555555555555555555555555544554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (836 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       967  (0.053935); expected 358.6 (0.02)
Passed bias filter:                      556  (0.0310112); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.72u 0.30s 00:00:01.02 Elapsed: 00:00:00.45
# Mc/sec: 5640.78
//
Query:       KOO24828.1  [L=570]
Description: glycerol-3-phosphate o-acyltransferase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.7e-18   65.9   0.0    5.4e-09   35.8   0.0    2.3  2  Acyltransferase  Acyltransferase


Domain annotation for each model (and alignments):
>> Acyltransferase  Acyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.8   0.0     3e-13   5.4e-09       1      73 [.     151     227 ..     151     256 .. 0.79
   2 !   27.9   0.0     8e-11   1.4e-06      76     134 ..     393     451 ..     377     452 .. 0.90

  Alignments for each domain:
  == domain 1  score: 35.8 bits;  conditional E-value: 3e-13
  Acyltransferase   1 kvrvtglenlpekgpailvaNHqsy.lDvlllwlllyksngp.rnvviiakkellsipllgflmrllgfifidR.......k 73 
                      ++ v g+en+p+ gpailvaNH    +D ++ +++      p r++ ++ +++  + p++gf++r++ +++++R       +
       KOO24828.1 151 RIDVIGMENIPQHGPAILVANHFNQfIDGMCVMCAC-----PqRRISFLIARKSYTHPIIGFFARAMAAVPVTRpqdvafaG 227
                      57899*****************9999********99.....3366666666665677*****************55444440 PP

  == domain 2  score: 27.9 bits;  conditional E-value: 8e-11
  Acyltransferase  76 araagsleniselleegklvviFPEGtrsregellpfkkGlvrlaakakkgvpivPvai 134
                      +++ ++   ++++l +g  ++iFPEG+    + ll+ k G++ la++a  +vpivPv++
       KOO24828.1 393 GDYDKVFPDVVKALDRGACLGIFPEGGSHDRTDLLELKPGVALLALSAQLQVPIVPVGL 451
                      677788889999*********************************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (570 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       390  (0.0217525); expected 358.6 (0.02)
Passed bias filter:                      237  (0.0132188); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.50u 0.28s 00:00:00.78 Elapsed: 00:00:00.43
# Mc/sec: 3979.42
//
Query:       KOO24829.1  [L=694]
Description: hypothetical protein Ctob_005528 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.045   13.9   3.3         11    6.1   0.1    3.6  3  DUF550    Protein of unknown function (DUF550)
       0.22   11.3   1.6       0.81    9.5   0.2    2.4  2  Scm3      Centromere protein Scm3
        4.1    7.8  10.5        4.6    7.6   1.4    3.0  2  CCDC-167  Coiled-coil domain-containing protein 167
        7.9    7.2  11.9         43    4.8   0.2    4.3  4  DUF4404   Domain of unknown function (DUF4404)


Domain annotation for each model (and alignments):
>> DUF550  Protein of unknown function (DUF550)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.1   0.1    0.0025        11      53      87 ..     349     383 ..     298     391 .. 0.83
   2 ?    4.4   0.2    0.0088        39      63      92 ..     477     506 ..     444     510 .. 0.88
   3 ?    1.5   0.0      0.07   3.1e+02      12      55 ..     574     618 ..     563     625 .. 0.81

  Alignments for each domain:
  == domain 1  score: 6.1 bits;  conditional E-value: 0.0025
      DUF550  53 qrraGisdeqiidaiiakleinkarqWPdpkegep 87 
                 + ra +  +  ++ai+  l+i  ar+W  + ++ +
  KOO24829.1 349 EERAKVVAHLRAQAIKRMLKIELARSWTSWMDTYK 383
                 467777788889******************88755 PP

  == domain 2  score: 4.4 bits;  conditional E-value: 0.0088
      DUF550  63 iidaiiakleinkarqWPdpkegeprkaik 92 
                 +  a++  l+++ ar W ++++  ++++i+
  KOO24829.1 477 LQVAVRRTLKMDLARGWTQWHDVTKHTKIN 506
                 55699999**************99998886 PP

  == domain 3  score: 1.5 bits;  conditional E-value: 0.07
      DUF550  12 tfG.dvraeGpikhlskelleiaadPsDpeewvDvllLlldaqrr 55 
                 ++   v+++ +++ + +el  +  +  D + w  + ++l+  + r
  KOO24829.1 574 KYReAVQTAATLQSVVRELQAVLKEALDASSWSSCRMVLYHEHLR 618
                 45446899999999***********************99988776 PP

>> Scm3  Centromere protein Scm3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.3   0.1      0.21   9.4e+02       2      25 ..     356     384 ..     355     385 .. 0.84
   2 ?    9.5   0.2   0.00018      0.81       6      25 ..     558     577 ..     554     581 .. 0.88

  Alignments for each domain:
  == domain 1  score: -0.3 bits;  conditional E-value: 0.21
                 HHHHHHHHHHH.....HHHHHHHHHHHHS CS
        Scm3   2 allreesderl.....kkrwesifeKYer 25 
                 a lr+++ +r+      ++w s ++ Y+r
  KOO24829.1 356 AHLRAQAIKRMlkielARSWTSWMDTYKR 384
                 667888888888888899******99987 PP

  == domain 2  score: 9.5 bits;  conditional E-value: 0.00018
                 HHHHHHHHHHHHHHHHHHHS CS
        Scm3   6 eesderlkkrwesifeKYer 25 
                 ++++ +l+++we  feKY +
  KOO24829.1 558 RAQLVKLREKWETKFEKYRE 577
                 78999*************86 PP

>> CCDC-167  Coiled-coil domain-containing protein 167
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.6   1.4     0.001       4.6       5      68 ..     271     339 ..     269     367 .. 0.78
   2 ?    3.6   2.2     0.019        85       9      50 ..     418     460 ..     411     484 .. 0.63

  Alignments for each domain:
  == domain 1  score: 7.6 bits;  conditional E-value: 0.001
    CCDC-167   5 eIdkleeklascrerLeaverrlrkeelseeeResle.....eEeaslkeqleenekeLksLrkeNrks 68 
                  Id l++   ++ +r+++    +r++e+s+ + ++++        +++  +l + e +   Lr e + s
  KOO24829.1 271 MIDALQDDAIQFDHRIDEAKAAMRRVEMSKLDERAVYdkqarATAHAMAIELARAEHKIDTLRAELSAS 339
                 599***************************995555533333555666667777777777777775544 PP

  == domain 2  score: 3.6 bits;  conditional E-value: 0.019
    CCDC-167   9 leeklascrerLeaverrlrkeelseee.Resle......eEeaslkeq 50 
                 +  +++ +++++ ++er lrke+  +e  R+ le      eE      +
  KOO24829.1 418 IRRAIEPYKQQIADLERDLRKEKAAHEMtRTMLEaralttEE------E 460
                 566788899999999999999999888654444422222122......2 PP

>> DUF4404  Domain of unknown function (DUF4404)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.0       1.5   6.9e+03       4      35 ..     186     217 ..     183     228 .. 0.81
   2 ?    0.9   0.0      0.17   7.5e+02      51      72 ..     399     420 ..     326     423 .. 0.78
   3 ?    3.3   3.6     0.028   1.3e+02       2      54 ..     426     478 ..     425     484 .. 0.86
   4 ?    4.8   0.2    0.0096        43       3      45 ..     559     604 ..     557     617 .. 0.78

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 1.5
     DUF4404   4 lLekLheeLeqnesldeetralLeslaediee 35 
                 ++++L + L++     +e +  L  la+d e+
  KOO24829.1 186 EMKTLATALREAAMCRTECAHALDHLASDFER 217
                 67788888888888888888888888888876 PP

  == domain 2  score: 0.9 bits;  conditional E-value: 0.17
     DUF4404  51 erlneaverFeeeHPklagvlr 72 
                  +ln+a+++ ++ HP ++++ r
  KOO24829.1 399 GELNKALSTWAQVHPPMSRIRR 420
                 5688889999999998887755 PP

  == domain 3  score: 3.3 bits;  conditional E-value: 0.028
     DUF4404   2 kelLekLheeLeqnesldeetralLeslaedieellaeedaaaeeeelaerln 54 
                 k+++++L+  L++++++ e tr  Le+ a   ee +++  +a++++ ++  l+
  KOO24829.1 426 KQQIADLERDLRKEKAAHEMTRTMLEARALTTEEEMHRRREAEKHHRMQHLLQ 478
                 6899*********************************9999999875554444 PP

  == domain 4  score: 4.8 bits;  conditional E-value: 0.0096
     DUF4404   3 elLekLheeLe...qnesldeetralLeslaedieellaeedaaae 45 
                 ++L kL+e+ e   ++ +   +t+a+L+s+ ++++++l+e  +a++
  KOO24829.1 559 AQLVKLREKWEtkfEKYREAVQTAATLQSVVRELQAVLKEALDASS 604
                 56677777776555566667789****************9988876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (694 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1194  (0.066596); expected 358.6 (0.02)
Passed bias filter:                      493  (0.0274974); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.64u 0.26s 00:00:00.90 Elapsed: 00:00:00.42
# Mc/sec: 4987.01
//
Query:       KOO24830.1  [L=143]
Description: hypothetical protein Ctob_005529 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
     0.0014   18.0   0.1     0.0028   17.0   0.1    1.6  1  DUF3638   Protein of unknown function (DUF3638)


Domain annotation for each model (and alignments):
>> DUF3638  Protein of unknown function (DUF3638)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.0   0.1   1.6e-07    0.0028     124     165 ..       6      48 ..       1      98 [. 0.83

  Alignments for each domain:
  == domain 1  score: 17.0 bits;  conditional E-value: 1.6e-07
     DUF3638 124 eeclkeggvllvqpehilSfkLmglekllskkeek.vakelle 165
                  +c ++gg +  + eh lS++L+g e  ls+k +   a+++ +
  KOO24830.1   6 LRCERNGGAVFFTSEHRLSLQLKGHELRLSEKGSGaNADSFER 48 
                 58*************************9996554344444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (143 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       414  (0.0230911); expected 358.6 (0.02)
Passed bias filter:                      335  (0.0186848); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.29s 00:00:00.64 Elapsed: 00:00:00.41
# Mc/sec: 1052.15
//
Query:       KOO24831.1  [L=96]
Description: hypothetical protein Ctob_011503 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      0.003   17.0   4.3     0.0034   16.8   4.3    1.0  1  DUF3552    Domain of unknown function (DUF3552)
      0.008   16.4   1.3      0.016   15.4   1.3    1.5  1  DUF3618    Protein of unknown function (DUF3618)
  ------ inclusion threshold ------
      0.013   14.4   7.4      0.014   14.3   7.4    1.0  1  Spc7       Spc7 kinetochore protein
      0.038   14.0   0.6      0.087   12.8   0.6    1.5  1  Prp19      Prp19/Pso4-like
       0.17   12.5   5.4       0.21   12.2   5.4    1.1  1  BST2       Bone marrow stromal antigen 2
        0.2   12.0   2.4       0.23   11.8   2.4    1.1  1  PVL_ORF50  PVL ORF-50-like family
       0.35   10.1   0.8       0.38   10.0   0.8    1.0  1  TMPIT      TMPIT-like protein
          3    8.3   6.4        2.3    8.7   1.1    2.0  2  UPF0449    Uncharacterised protein family UPF0449


Domain annotation for each model (and alignments):
>> DUF3552  Domain of unknown function (DUF3552)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   4.3   1.5e-06    0.0034      69     138 ..       5      74 ..       2      90 .. 0.92

  Alignments for each domain:
  == domain 1  score: 16.8 bits;  conditional E-value: 1.5e-06
     DUF3552  69 lekelkerrnelqrlekRllqkeetLdrkeeslekkeesleekekelkqkeqsleekeeeleelveeqrq 138
                 +e+elk r n+l+  ++ l+  e +L r +e l    + l++ e+e+k++ ++  e ++ele++ e+  +
  KOO24831.1   5 TEEELKLRSNQLEITNEMLRATEAELIRNDEVLGITKSMLSKAEEEIKAQARTTAELQKELESTRESLSR 74 
                 89***********************************************************998776555 PP

>> DUF3618  Protein of unknown function (DUF3618)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   1.3   7.2e-06     0.016       1      25 [.      55      79 ..      55      82 .. 0.88

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 7.2e-06
     DUF3618  1 ardpeeIerdIertRaeLaeTvdeL 25
                ar+++e++ + e tR+ L++ +  L
  KOO24831.1 55 ARTTAELQKELESTRESLSRALAGL 79
                69*****************988665 PP

>> Spc7  Spc7 kinetochore protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   7.4   6.4e-06     0.014     165     237 ..       2      73 ..       1      79 [. 0.86

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 6.4e-06
        Spc7 165 ldellpeleeekaeleeeleklqeaaeelesidkeeLeelreelaelkaeieekkkelaelqeqleeleekie 237
                 l++  +el+ + ++le + e+l++ ++el   + e L  +++ l+++++ei+++ + +aelq++le+ +e+++
  KOO24831.1   2 LHATEEELKLRSNQLEITNEMLRATEAELIR-NDEVLGITKSMLSKAEEEIKAQARTTAELQKELESTRESLS 73 
                 5677899999999999999999997777555.4678999****************************999886 PP

>> Prp19  Prp19/Pso4-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.6   3.9e-05     0.087       7      41 ..      42      76 ..      40      77 .. 0.95

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 3.9e-05
                HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
       Prp19  7 slLstlqnEWDalmletfelrkqleqtrqeLsqaL 41
                s+Ls+  +E  a +  t el+k+le+tr+ Ls aL
  KOO24831.1 42 SMLSKAEEEIKAQARTTAELQKELESTRESLSRAL 76
                68999999*************************98 PP

>> BST2  Bone marrow stromal antigen 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   5.4   9.5e-05      0.21      21      87 ..      11      77 ..       3      81 .. 0.84

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 9.5e-05
                HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
        BST2 21 lLerqLtqaqeslreaeaqaatcnqtvvtLkasLekekaqsqkqqakvqelqgeikkLnqkLqdaea 87
                l  +qL  ++e lr +ea+ +  ++++   k+ L k + + + q +   elq+e+++  ++L  a+a
  KOO24831.1 11 LRSNQLEITNEMLRATEAELIRNDEVLGITKSMLSKAEEEIKAQARTTAELQKELESTRESLSRALA 77
                56789**************999888888878888888888888889999******999999998876 PP

>> PVL_ORF50  PVL ORF-50-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   2.4    0.0001      0.23      12      77 ..       5      70 ..       2      83 .. 0.76

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 0.0001
   PVL_ORF50 12 tkreveli.ekygitpelvakrvkdkleldealdarkdsrlkeekekvkskileeekkerklerqrk 77
                t+ e +l  ++ +it e+++    + ++ de+l   k + +k e+e++ ++ +  ++ +++le  r+
  KOO24831.1  5 TEEELKLRsNQLEITNEMLRATEAELIRNDEVLGITKSMLSKAEEEIK-AQARTTAELQKELESTRE 70
                55666654145689*******************999999888777665.566666777777777665 PP

>> TMPIT  TMPIT-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   0.8   0.00017      0.38      15      92 ..       6      82 ..       1      88 [. 0.82

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.00017
       TMPIT 15 eetakeykqkleelsklqskcskeikkqkkrlkelksslkklkksvkeeeeeeveelkeelkerkkvlkevesllpkk 92
                ee+ k   ++le ++++  ++  e+ ++ + l   ks+l+k ++++ + ++++++el++el++++++l++  + lp++
  KOO24831.1  6 EEELKLRSNQLEITNEMLRATEAELIRNDEVLGITKSMLSKAEEEI-KAQARTTAELQKELESTRESLSRALAGLPER 82
                5556666777788888888888888999999999999999999997.58899999************99999999986 PP

>> UPF0449  Uncharacterised protein family UPF0449
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.8   0.8     0.074   1.6e+02      70      96 ..       5      31 ..       1      37 [. 0.74
   2 ?    8.7   1.1     0.001       2.3      52      87 ..      43      78 ..      26      83 .. 0.81

  Alignments for each domain:
  == domain 1  score: 2.8 bits;  conditional E-value: 0.074
     UPF0449 70 lnerLeeakeeLkqkceeLktageeLe 96
                ++e+L+  +++L+   e L++   eL 
  KOO24831.1  5 TEEELKLRSNQLEITNEMLRATEAELI 31
                667788888888888888887777775 PP

  == domain 2  score: 8.7 bits;  conditional E-value: 0.001
     UPF0449 52 dleaeveelYeqvrtylelnerLeeakeeLkqkcee 87
                 l +  ee+  q+rt  el+++Le+++e+L + +  
  KOO24831.1 43 MLSKAEEEIKAQARTTAELQKELESTRESLSRALAG 78
                44556789999*******************987665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (96 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1572  (0.0876792); expected 358.6 (0.02)
Passed bias filter:                      774  (0.0431703); expected 358.6 (0.02)
Passed Vit filter:                        86  (0.0047967); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.39u 0.26s 00:00:00.65 Elapsed: 00:00:00.38
# Mc/sec: 749.44
//
Query:       KOO24832.1  [L=506]
Description: ankyrin repeat and protein kinase domain-containing protein 1 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.1e-21   74.5   3.3    3.2e-06   27.3   0.0    4.5  4  Ank_5     Ankyrin repeats (many copies)
    6.7e-21   74.7   0.0    1.9e-10   41.2   0.0    3.6  3  Ank_2     Ankyrin repeats (3 copies)
    1.2e-20   73.6   2.0    0.00049   20.6   0.1    6.3  7  Ank_4     Ankyrin repeats (many copies)
    1.1e-16   60.4   6.1    0.00057   20.2   0.0    6.7  7  Ank       Ankyrin repeat
    1.1e-14   53.1   2.0       0.42   11.3   0.0    7.8  8  Ank_3     Ankyrin repeat


Domain annotation for each model (and alignments):
>> Ank_5  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.4   0.1   2.7e-07   0.00097       1      50 [.      78     131 ..      78     133 .. 0.96
   2 !   27.3   0.0   8.9e-10   3.2e-06      18      56 .]     132     171 ..     128     171 .. 0.93
   3 !   19.2   0.0   3.2e-07    0.0011      15      55 ..     258     300 ..     243     301 .. 0.84
   4 !   17.3   0.0   1.3e-06    0.0045      12      56 .]     290     335 ..     288     335 .. 0.95

  Alignments for each domain:
  == domain 1  score: 19.4 bits;  conditional E-value: 2.7e-07
       Ank_5   1 Llehg.padvnrldgggn..tpLhvAakygaadvvrlLlargadlnltdsrG.l 50 
                 Ll++g +++  ++d+g+   tpL  A+ ++ +  vrlLl rga+++l+d++G +
  KOO24832.1  78 LLDAGhDVNAMCEDPGWRhkTPLSAAVDGNEPLAVRLLLRRGANPDLRDGDGdR 131
                 89*************************************************955 PP

  == domain 2  score: 27.3 bits;  conditional E-value: 8.9e-10
       Ank_5  18 tpLhvAak.ygaadvvrlLlargadlnltdsrGltaldlA 56 
                  pLh+A++ + + ++++lL+  ga+l+++d++G+t+l++A
  KOO24832.1 132 YPLHWASSfGDHDECAELLVQAGASLDARDAHGQTPLEFA 171
                 7*******999999999999******************98 PP

  == domain 3  score: 19.2 bits;  conditional E-value: 3.2e-07
       Ank_5  15 ggn.tpLhvAakygaadvvrlLlargadlnltdsrG.ltaldl 55 
                 ++  ++L +A+++g ++ +  Ll +gad+nl +++G  t+l++
  KOO24832.1 258 KSRlSALAIASYNGQLRAMASLLRHGADPNLAEAEGgFTPLHF 300
                 44449************************************97 PP

  == domain 4  score: 17.3 bits;  conditional E-value: 1.3e-06
       Ank_5  12 ldgggntpLhvAak.ygaadvvrlLlargadlnltdsrGltaldlA 56 
                 + +gg+tpLh+ ++ + ++   r+Ll+ +a++     +Glt+ld+A
  KOO24832.1 290 EAEGGFTPLHFCVHdADRSAATRVLLEARANPLKPKHDGLTPLDVA 335
                 5689****************************************99 PP

>> Ank_2  Ankyrin repeats (3 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.2   0.0   5.4e-14   1.9e-10       1      83 []      63     161 ..      63     161 .. 0.84
   2 !   12.4   0.0   5.1e-05      0.18      33      81 ..     230     288 ..     227     290 .. 0.75
   3 !   28.8   0.0   3.8e-10   1.4e-06       1      73 [.     264     348 ..     264     358 .. 0.81

  Alignments for each domain:
  == domain 1  score: 41.2 bits;  conditional E-value: 5.4e-14
       Ank_2   1 LhlAakngnlelvklLl.egadpn...k....ngktaLhyAakngnleivklLleh......ad.ndgrtpLhyAars.ghleivklLlekgadinlkd 83 
                 L  Aa++g+   +k Ll +g+d+n   +     +kt+L +A+ ++   +v+lLl         d +  r pLh+A+++ +h e+++lL++ ga+++++d
  KOO24832.1  63 LWRAAEHGDIGRLKMLLdAGHDVNamcEdpgwRHKTPLSAAVDGNEPLAVRLLLRRganpdlRDgDGDRYPLHWASSFgDHDECAELLVQAGASLDARD 161
                 5679999988899**********98762589999*********997778*****9664555433766789******995599*******99***99887 PP

  == domain 2  score: 12.4 bits;  conditional E-value: 5.1e-05
       Ank_2  33 Aakngnleiv.klLleh...ad......ndgrtpLhyAarsghleivklLlekgadinl 81 
                 Aa +g+++++ + L  +   +d      ++  ++L +A+ +g+l+++  Ll +gad+nl
  KOO24832.1 230 AAASGDHKVLeRCLARYrqpVDqprpasKSRLSALAIASYNGQLRAMASLLRHGADPNL 288
                 67777778774555555678334445548888*******************99****97 PP

  == domain 3  score: 28.8 bits;  conditional E-value: 3.8e-10
       Ank_2   1 LhlAakngnlelvklLl.egadpn..k..ngktaLhyAakngnl.eivklLleh.ad.....ndgrtpLhyAarsghleivklLl 73 
                 L +A++ng+l ++  Ll +gadpn  +   g t+Lh++++  ++  + + Lle+ a+      dg tpL +A ++g +e   lL 
  KOO24832.1 264 LAIASYNGQLRAMASLLrHGADPNlaEaeGGFTPLHFCVHDADRsAATRVLLEArANplkpkHDGLTPLDVARKNGCEESGALLA 348
                 679999**9999999999******9736799*********98773558****977444556699********9999988776665 PP

>> Ank_4  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.7   0.0   4.2e-05      0.15       3      36 ..      61      94 ..      60     104 .. 0.82
   2 !   20.0   0.0   2.1e-07   0.00075       7      47 ..     101     142 ..      96     144 .. 0.83
   3 !   16.6   0.0   2.4e-06    0.0086       4      39 ..     133     168 ..     133     171 .. 0.82
   4 !    7.0   0.0    0.0024       8.8       6      49 ..     228     274 ..     224     275 .. 0.86
   5 !   20.6   0.1   1.4e-07   0.00049       2      44 ..     261     303 ..     260     315 .. 0.85
   6 ?    4.2   0.0      0.02        71      16      44 ..     310     337 ..     303     347 .. 0.84
   7 ?    2.1   0.0     0.084     3e+02       2      28 ..     329     355 ..     328     358 .. 0.84

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 4.2e-05
       Ank_4  3 taLhyaaisgrlelvrlLlekgadinaqdnrsGe 36
                t L +aa++g++  ++ Ll+ g d+na + + G+
  KOO24832.1 61 TSLWRAAEHGDIGRLKMLLDAGHDVNAMCEDPGW 94
                6799***********************9655566 PP

  == domain 2  score: 20.0 bits;  conditional E-value: 2.1e-07
       Ank_4   7 yaaisgrlel.vrlLlekgadinaqdnrsGet.alhiAakrgn 47 
                 +aa +g+++l vrlLl +ga+++ + +++G+  +lh A ++g+
  KOO24832.1 101 SAAVDGNEPLaVRLLLRRGANPDLR-DGDGDRyPLHWASSFGD 142
                 688899999967888888*******.8887755********97 PP

  == domain 3  score: 16.6 bits;  conditional E-value: 2.4e-06
       Ank_4   4 aLhyaaisgrlel.vrlLlekgadinaqdnrsGetal 39 
                 +Lh+a ++g+++  ++lL++ ga+++a+ ++ G+t+l
  KOO24832.1 133 PLHWASSFGDHDEcAELLVQAGASLDAR-DAHGQTPL 168
                 79*****666666155888*********.*******9 PP

  == domain 4  score: 7.0 bits;  conditional E-value: 0.0024
       Ank_4   6 hyaaisgrlelvrlLlek.gadinaq..dnrsGetalhiAakrgnve 49 
                  +aa+sg++++++++l++ ++ ++    +++s ++al iA ++g+++
  KOO24832.1 228 WKAAASGDHKVLERCLARyRQPVDQPrpASKSRLSALAIASYNGQLR 274
                 67999***********9889998888667788899*********976 PP

  == domain 5  score: 20.6 bits;  conditional E-value: 1.4e-07
       Ank_4   2 ltaLhyaaisgrlelvrlLlekgadinaqdnrsGetalhiAak 44 
                 l+aL  a + g+l++ ++Ll +gad+n    + G+t+lh+++ 
  KOO24832.1 261 LSALAIASYNGQLRAMASLLRHGADPNLAEAEGGFTPLHFCVH 303
                 678888999*******************96688********96 PP

  == domain 6  score: 4.2 bits;  conditional E-value: 0.02
       Ank_4  16 lvrlLlekgadinaqdnrsGetalhiAak 44 
                 + r Lle +a++ +    +G+t+l+ A k
  KOO24832.1 310 ATRVLLEARANPLKP-KHDGLTPLDVARK 337
                 57899******9998.899****998755 PP

  == domain 7  score: 2.1 bits;  conditional E-value: 0.084
       Ank_4   2 ltaLhyaaisgrlelvrlLlekgadin 28 
                 lt+L+ a + g++e+ +lL +  a i+
  KOO24832.1 329 LTPLDVARKNGCEESGALLASAVARID 355
                 89*************999988766655 PP

>> Ank  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.2   0.0     0.018        66       6      29 ..      63      87 ..      60      89 .. 0.77
   2 !   13.1   0.0   2.9e-05       0.1       3      31 ..      97     126 ..      96     127 .. 0.91
   3 !   20.2   0.0   1.6e-07   0.00057       4      31 ..     132     161 ..     130     162 .. 0.79
   4 ?   -2.8   0.0         3   1.1e+04       1       6 [.     163     168 ..     163     174 .. 0.87
   5 !    8.8   0.2   0.00066       2.4       4      29 ..     262     288 ..     261     290 .. 0.86
   6 !    8.4   0.0   0.00084         3       2      27 ..     294     321 ..     293     324 .. 0.72
   7 ?    1.8   0.0       0.1   3.8e+02       1      13 [.     327     339 ..     327     369 .. 0.67

  Alignments for each domain:
  == domain 1  score: 4.2 bits;  conditional E-value: 0.018
                HHHHH...HHTTHHHHHHHH.TTTSTTC CS
         Ank  6 LHlAa...tngkkriiklLL.hGAnlna 29
                L +Aa    +g    +k+LL  G ++na
  KOO24832.1 63 LWRAAehgDIG---RLKMLLdAGHDVNA 87
                77888555555...******6699***8 PP

  == domain 2  score: 13.1 bits;  conditional E-value: 2.9e-05
                 BBHHHHHHHHTTHHHHHHHH.TTTSTTCBT CS
         Ank   3 nTPLHlAatngkkriiklLL.hGAnlnald 31 
                  TPL  A+ ++ +  ++lLL +GAn++++d
  KOO24832.1  97 KTPLSAAVDGNEPLAVRLLLrRGANPDLRD 126
                 59******8777********88*****998 PP

  == domain 3  score: 20.2 bits;  conditional E-value: 1.6e-07
                 BHHHHHHHHTT.HHHHHHHH.TTTSTTCBT CS
         Ank   4 TPLHlAatngk.kriiklLL.hGAnlnald 31 
                 +PLH+A+++g+  ++++lL+  GA+l+a+d
  KOO24832.1 132 YPLHWASSFGDhDECAELLVqAGASLDARD 161
                 8*****9555538888888855*******9 PP

  == domain 4  score: -2.8 bits;  conditional E-value: 3
                 TSBBHH CS
         Ank   1 dGnTPL 6  
                 +G TPL
  KOO24832.1 163 HGQTPL 168
                 69***9 PP

  == domain 5  score: 8.8 bits;  conditional E-value: 0.00066
                 BHHHHHHHHTTHHHHHHHH.TTTSTTC CS
         Ank   4 TPLHlAatngkkriiklLL.hGAnlna 29 
                 ++L +A++ng++r    LL hGA++n+
  KOO24832.1 262 SALAIASYNGQLRAMASLLrHGADPNL 288
                 57889999999888888999*****96 PP

  == domain 6  score: 8.4 bits;  conditional E-value: 0.00084
                 SBBHHHHHH....HHTTHHHHHHHH.TTTST CS
         Ank   2 GnTPLHlAa....tngkkriiklLL.hGAnl 27 
                 G+TPLH ++    + +    ++ LL  +An+
  KOO24832.1 294 GFTPLHFCVhdadRSA---ATRVLLeARANP 321
                 9******777555434...777888667876 PP

  == domain 7  score: 1.8 bits;  conditional E-value: 0.1
                 TSBBHHHHHHHHT CS
         Ank   1 dGnTPLHlAatng 13 
                 dG TPL +A  ng
  KOO24832.1 327 DGLTPLDVARKNG 339
                 8*****9975444 PP

>> Ank_3  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.4   0.0   0.00024      0.85       4      31 .]      61      87 ..      58      87 .. 0.92
   2 !    8.1   0.0    0.0013       4.6       3      30 ..      97     123 ..      95     124 .. 0.87
   3 !   11.3   0.0   0.00012      0.42       3      30 ..     131     158 ..     129     159 .. 0.89
   4 ?   -1.6   0.0       1.9   6.9e+03       1       9 [.     163     171 ..     163     173 .. 0.85
   5 ?   -0.1   0.0       0.6   2.1e+03       8      24 ..     229     245 ..     227     251 .. 0.81
   6 !    6.9   0.1    0.0032        12       4      30 ..     262     287 ..     260     288 .. 0.92
   7 !    5.7   0.0    0.0081        29       2      28 ..     294     320 ..     293     323 .. 0.83
   8 ?    0.4   0.0      0.41   1.5e+03       1      15 [.     327     341 ..     327     369 .. 0.76

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00024
       Ank_3  4 tpLhlAarsgnleivkfLlenkgadvna 31
                t L +Aa++g++ ++k+Ll+  g dvna
  KOO24832.1 61 TSLWRAAEHGDIGRLKMLLD-AGHDVNA 87
                899*****************.8*99996 PP

  == domain 2  score: 8.1 bits;  conditional E-value: 0.0013
       Ank_3   3 etpLhlAarsgnleivkfLlenkgadvn 30 
                  tpL  A+  + +  v++Ll+ +ga+++
  KOO24832.1  97 KTPLSAAVDGNEPLAVRLLLR-RGANPD 123
                 599998888888889******.9**997 PP

  == domain 3  score: 11.3 bits;  conditional E-value: 0.00012
       Ank_3   3 etpLhlAarsgnle.ivkfLlenkgadvn 30 
                 ++pLh+A ++g+++  +++L++  ga ++
  KOO24832.1 131 RYPLHWASSFGDHDeCAELLVQ-AGASLD 158
                 79***********7799*9999.899887 PP

  == domain 4  score: -1.6 bits;  conditional E-value: 1.9
       Ank_3   1 nGetpLhlA 9  
                 +G+tpL +A
  KOO24832.1 163 HGQTPLEFA 171
                 79****877 PP

  == domain 5  score: -0.1 bits;  conditional E-value: 0.6
       Ank_3   8 lAarsgnleivkfLlen 24 
                  Aa sg++++++ +l  
  KOO24832.1 229 KAAASGDHKVLERCLAR 245
                 699******99999984 PP

  == domain 6  score: 6.9 bits;  conditional E-value: 0.0032
       Ank_3   4 tpLhlAarsgnleivkfLlenkgadvn 30 
                 ++L +A  +g l  +  Ll+ +gad+n
  KOO24832.1 262 SALAIASYNGQLRAMASLLR-HGADPN 287
                 78999*******99******.9****9 PP

  == domain 7  score: 5.7 bits;  conditional E-value: 0.0081
       Ank_3   2 GetpLhlAarsgnle.ivkfLlenkgad 28 
                 G tpLh++++ ++ +   + Lle   a+
  KOO24832.1 294 GFTPLHFCVHDADRSaATRVLLE-ARAN 320
                 88************767999999.5555 PP

  == domain 8  score: 0.4 bits;  conditional E-value: 0.41
       Ank_3   1 nGetpLhlAarsgnl 15 
                 +G tpL +A ++g+ 
  KOO24832.1 327 DGLTPLDVARKNGCE 341
                 588888888777765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (506 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       364  (0.0203023); expected 358.6 (0.02)
Passed bias filter:                      236  (0.013163); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.49u 0.23s 00:00:00.72 Elapsed: 00:00:00.39
# Mc/sec: 3873.22
//
Query:       KOO24833.1  [L=332]
Description: hypothetical protein Ctob_011501 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (332 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       547  (0.0305092); expected 358.6 (0.02)
Passed bias filter:                      388  (0.0216409); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.43u 0.27s 00:00:00.70 Elapsed: 00:00:00.41
# Mc/sec: 2449.21
//
Query:       KOO24834.1  [L=321]
Description: hypothetical protein Ctob_011500 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.9e-07   30.7   0.0    4.5e-07   30.1   0.0    1.3  1  Methyltransf_21  Methyltransferase FkbM domain


Domain annotation for each model (and alignments):
>> Methyltransf_21  Methyltransferase FkbM domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.1   0.0   2.5e-11   4.5e-07      28     173 .]       7     193 ..       1     193 [. 0.75

  Alignments for each domain:
  == domain 1  score: 30.1 bits;  conditional E-value: 2.5e-11
  Methyltransf_21  28 aiEPvpns.............lpkfeklranll..tlavgndv........................glyelivegksggkyfpfavgdtngfs 82 
                      a+EP p++             + + +kl  n+   ++++ n                          g+ e++  ++ +       + +++g++
       KOO24834.1   7 AFEPIPAYqslvrfglslnpgFQRRAKLYSNVVypQAGIYNVSvpqeadvgmkgrgeetveegseadGPQEPQEQAAQSPPPSRRVRRGMAGMQ 100
                      7999999888888888884444444444444447777777666777777788877777777777666556666666655666666777777777 PP

  Methyltransf_21  83 ts.svlg....gedaryievpvvtldsf.leeikksridllkiDvEGaElevLeGaqkglkrcqpnlivvEvhkfkefet......elfdeirq 164
                      +s         g+++++i   ++ +d++ l ++   +   +k+DvEG+E ++L++a k+l r      ++E +kf++  +        +++ ++
       KOO24834.1 101 GSrG-ILkqdaGQRYTTIAAHAISIDEVaLHDE---KLCGIKVDVEGYEAQALQSAAKLLAR------KLELNKFHNGSVhasdqmCATEKTLM 184
                      7742.22588899***************99999...9999***************9999988......4799*999666668888877888899 PP

  Methyltransf_21 165 flrecgyry 173
                      +l+ +gyr+
       KOO24834.1 185 HLEALGYRF 193
                      999999996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (321 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       457  (0.0254894); expected 358.6 (0.02)
Passed bias filter:                      381  (0.0212505); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.25s 00:00:00.73 Elapsed: 00:00:00.44
# Mc/sec: 2192.14
//
Query:       KOO24835.1  [L=537]
Description: phospholipase b [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
   4.3e-151  504.1   0.5   5.7e-151  503.7   0.5    1.0  1  Phospholip_B  Phospholipase B


Domain annotation for each model (and alignments):
>> Phospholip_B  Phospholipase B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  503.7   0.5  3.2e-155  5.7e-151      50     528 ..      38     522 ..      12     524 .. 0.91

  Alignments for each domain:
  == domain 1  score: 503.7 bits;  conditional E-value: 3.2e-155
  Phospholip_B  50 grndlalatfkdsvnetGWgqLevet..qsaysdtvqayaaGllEGaltaeniykhlsNtieavckkseelcksklrefleenlkyvkkqvkekkkt 144
                   ++++ a+atf +s n+tGW++L+ve+   +   d+vqa+aaG++EG lta+ i   + N+  ++         +++++f++en+++v++q++++++ 
    KOO24835.1  38 ATDWSARATFIESNNQTGWSTLTVEAvdAEEAADSVQAFAAGFIEGRLTANLIDLEWVNLQITIS--------ARAKKFVQENTQWVRSQIQAHPE- 125
                   23456*********************9888999**************************987743........33678***************998. PP

  Phospholip_B 145 dpywrqvalllaqldGlvaGynkkvaksekkkeldlsdllllnlagdledlkkal...............l.tkvkeeakcsaLvKllpgvedlllg 225
                   dpyw qv+l++aq+dGlvaGy+++    + + +l+ +++ll+ ++ +l d++ka+               l + v  + +csa++K+lp+ ++l+ +
    KOO24835.1 126 DPYWVQVGLVIAQFDGLVAGYQSAPTWPQGNRSLTSFEILLIGMQPELGDVEKAVnpiarpdyskmtpeaLrEYVYANSHCSAMIKVLPDLSELYSA 222
                   **********************99888899999**********************9999988877766653244459******************** PP

  Phospholip_B 226 httwssyssm.lRiyKkYklreedravvpgtnvsfSsyPgllaSlDDfyitssrLvviettnevfnktLykkikpersvllwvRvmianrlaesgre 321
                   h tw ++s m lR+ K Ykl+++++a    ++vsfS+y+g la +DDfy+ts++Lvviettn+vfn++L++ ++ + +v++wvRv++an+la s+++
    KOO24835.1 223 HNTWTTFSDMgLRLWKVYKLPFATSA---AQTVSFSGYAGKLAGIDDFYVTSQKLVVIETTNSVFNNALFDSVTTS-TVPYWVRVIVANQLAASSPA 315
                   **********99*********65555...68*********************************************.******************** PP

  Phospholip_B 322 WveiFsrensgTynnqwlvldykkfkeskelpsglfwvveQlPgkveaeDvTevlnsegYwasyniPyfkeiynlsgyaaqvekyGdsysyettpra 418
                   W+++F + nsgTynnqw+ +dyk f+++  lp++lfwv eQ+Pg+  a+D+T++l ++g+w+syn+ +++ iyn+sgy++ v+k+G s sy+ +pra
    KOO24835.1 316 WHSVFYKFNSGTYNNQWMTVDYKLFTPKAPLPADLFWVSEQIPGYSAAADQTMAL-QRGHWPSYNVAFYADIYNMSGYPKIVQKFGPSESYQLAPRA 411
                   *******************************************************.***************************************** PP

  Phospholip_B 419 kiferdq.snvtdleslkrlmrynnYkkdplsk..gkpenaiaaRgDLnasggtaafGaiDlKvtsielv.eklqaravsGPttdtqppFdWskskl 511
                    if+rd+ + v+dl+s+k++mr n+Y+  p      +pe+aiaaRgDL + +++   Ga+D+K++s+el   +l+ +a++GP+ d+qp+F+W++ ++
    KOO24835.1 412 PIFRRDAdGMVQDLHSMKTFMRLNKYNATPTDPlfPTPESAIAARGDLMP-KPRL-AGAYDCKIASHELLsAELSTTAIAGPSSDDQPVFSWDAFPM 506
                   ******73689***************876655544588************.4444.7***********98789*********************777 PP

  Phospholip_B 512 levvrhqGlpdvwnFef 528
                   ++  +h+G+p  +nF +
    KOO24835.1 507 DQY-PHYGHPPRFNFAW 522
                   776.***********98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (537 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       483  (0.0269396); expected 358.6 (0.02)
Passed bias filter:                      416  (0.0232026); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.52u 0.28s 00:00:00.80 Elapsed: 00:00:00.41
# Mc/sec: 3886.35
//
Query:       KOO24836.1  [L=431]
Description: hypothetical protein Ctob_011499 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.1e-17   64.2   0.0    1.1e-17   64.2   0.0    1.6  2  Pkinase_Tyr   Protein tyrosine kinase
      3e-16   59.6   1.0    5.7e-16   58.7   0.0    1.8  2  Pkinase       Protein kinase domain
  ------ inclusion threshold ------
      0.014   13.9   4.1      0.047   12.2   5.1    1.4  2  Borrelia_P83  Borrelia P83/100 protein
       0.13   12.2   9.4       0.18   11.7   9.4    1.1  1  SRP-alpha_N   Signal recognition particle, alpha subunit, N-t
        1.9    8.3   7.9        3.8    7.4   7.9    1.5  1  Kei1          Inositolphosphorylceramide synthase subunit Kei
          2    7.3  17.6        3.7    6.4  17.6    1.4  1  NARP1         NMDA receptor-regulated protein 1
        2.6    7.8   8.0         16    5.3   8.0    2.0  1  Coilin_N      Coilin N-terminus
          6    7.4  13.2         10    6.7  13.2    1.3  1  IHABP4_N      Intracellular hyaluronan-binding protein 4 N-te


Domain annotation for each model (and alignments):
>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -5.0   2.1       6.2   1.4e+04      31      31 ..     199     199 ..     164     225 .. 0.51
   2 !   64.2   0.0     5e-21   1.1e-17       4     138 ..     278     414 ..     276     422 .. 0.85

  Alignments for each domain:
  == domain 1  score: -5.0 bits;  conditional E-value: 6.2
                  E CS
  Pkinase_Tyr  31 V 31 
                   
   KOO24836.1 199 A 199
                  2 PP

  == domain 2  score: 64.2 bits;  conditional E-value: 5e-21
                  EEEEEEESSEEEEEEEEETTTTSSEEEEEEEEE..STTSSHHHHHHHHHHHHHHHTS-BTTB--EEEEEE.SSSSEEEEEE--TTEBHHHHHHHT... CS
  Pkinase_Tyr   4 gkklGeGafGkVvegtlkgekekkevkVavKtl..keeateeekeelleeakimkklkhpnivkllgvct.keepllivteyvkgGdLlkfLrkk... 95 
                  +++l++GafG+V  +tl+    +  +++avK+   +++    e  +ll+e ++m +++hpnivk lg+      ++ +++e+++  +L++ ++++   
   KOO24836.1 278 QTTLAKGAFGTVALATLS----QLGMQCAVKIAdvRSGDGLGEALALLNEGSFM-NINHPNIVKTLGITFdAPAKIGLIMELMTC-SLHELIHAQalr 369
                  5789**************....88999999998334555566788999999998.69*************666779*******86.899999999888 PP

                  ..CTTTSBHHHHHHHHHHHHHHHHHHHHTTEEEST-SGGGEEEEE CS
  Pkinase_Tyr  96 ..ekekltlkdllsfalqvAkGmeyLeskklvHrdlaarNvLlse 138
                    ++  +  ++ll +a+++A Gm +L+ ++l+Hrdl   NvL+s 
   KOO24836.1 370 gvRRYVTWADSLLAIATDIAFGMTFLHYHDLIHRDLKPLNVLMSG 414
                  8555556667799*****************************985 PP

>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.8   3.1         6   1.3e+04      24      43 ..     203     222 ..     189     227 .. 0.51
   2 !   58.7   0.0   2.5e-19   5.7e-16       6     132 ..     280     413 ..     277     425 .. 0.88

  Alignments for each domain:
  == domain 1  score: -4.8 bits;  conditional E-value: 6
                 TEEEEEEEEECHCHCHHHHH CS
     Pkinase  24 gkivAvKkikkekakkkkek 43 
                   + A Kk +k+ akk++e+
  KOO24836.1 203 AAQKAAKKAAKKAAKKTEEE 222
                 23334444444444444433 PP

  == domain 2  score: 58.7 bits;  conditional E-value: 2.5e-19
                 EEEEESSEEEEEEEETTTTEEEEEEEEECHCHCHHHH.HHHHHHHHHHHHHSCTTB--EEEE.EEESSEEEEEEE--TTEBHHHHHH.......HHSS- CS
     Pkinase   6 klGeGsfGkVykaveketgkivAvKkikkekakkkke.kkvlrEikilkklkhpnivrlyev.feekdelylvleyveggeladlle.......rkgsl 95 
                 +l +G+fG+V  a+ ++ g + AvK+ ++++ +   e  ++l+E +++ +++hpniv+ +++ f  + ++ l++e++ +  l++l++       r+ + 
  KOO24836.1 280 TLAKGAFGTVALATLSQLGMQCAVKIADVRSGDGLGEaLALLNEGSFM-NINHPNIVKTLGItFDAPAKIGLIMELMTCS-LHELIHaqalrgvRRYVT 376
                 6779**************************999988867788888877.79*******999725669999********87.888888777778777777 PP

                 -HHHHHHHHHHHHHHHHHHHHTTEE-SS-SGGGEEEE CS
     Pkinase  96 seeeakkiakqilegleylHskgiiHrDlKpeNiLid 132
                   + +  ia+ i+ g+ +lH + +iHrDlKp N+L++
  KOO24836.1 377 WADSLLAIATDIAFGMTFLHYHDLIHRDLKPLNVLMS 413
                 778999*****************************97 PP

>> Borrelia_P83  Borrelia P83/100 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   5.1   2.1e-05     0.047     204     302 ..     167     261 ..      67     267 .. 0.66
   2 ?   -3.7   0.0       1.4     3e+03     388     432 ..     363     410 ..     352     421 .. 0.67

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 2.1e-05
  Borrelia_P83 204 keresqedakraqvlkeeldkkqkdadkakkkadtaednadkqrkevreklqeaknlpepadvsskkedkkvaeekkreiekaqkeikkkdeeakka 300
                    e+ + ++ak+a+   +e+  ++   ++a+kka ta ++a  q+   + ++++ak+++e+a+ +++   + +a   +  + +aq +++++  ea ++
    KOO24836.1 167 VEKKAAVAAKKAE---KESAMAAAAYNNAEKKASTAAQKA-AQKAAKKAAKKAAKKTEEEAARKGASGGNSMAPLGQPPATHAQLDTQQQLAEAIRQ 259
                   4777778888887...666666666677777776654444.34555556677788888888888888777777666667777777777776666665 PP

  Borrelia_P83 301 kd 302
                   ++
    KOO24836.1 260 RQ 261
                   55 PP

  == domain 2  score: -3.7 bits;  conditional E-value: 1.4
  Borrelia_P83 388 LresalqtirrrglyerekdLvaiait..sGkaklq...lvdidlknLev 432
                   ++  al+++rr+  +     L+aia++   G + l+   l++ dlk L+v
    KOO24836.1 363 IHAQALRGVRRYVTWAD--SLLAIATDiaFGMTFLHyhdLIHRDLKPLNV 410
                   56678999999988764..6777777743566655322256666666666 PP

>> SRP-alpha_N  Signal recognition particle, alpha subunit, N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   9.4   7.9e-05      0.18      89     195 ..     152     262 ..     133     283 .. 0.65

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 7.9e-05
                  ..HHHHHHHHH..HHHXXXXXXXXX........XXX..XXXXXXXXXX.....XX.XX...........XX....XXXXX...XXXXXXXXXXXXXXX CS
  SRP-alpha_N  89 y.FdeyFdqll..relEasaeaakkskaakepkamksfeeskkskktvksskedkkpegkkkkgakkekda....sddstpsatpetsrpstpsgllt 179
                    ++  F++ l  +++E++a+ a+k+ +++++ a+ ++++++k+++t +++ ++k++++  kk+akk +++    ++++ +s +p  + p+t   +l+
   KOO24836.1 152 SlWTSNFRASLwtSKVEKKAAVAAKKAEKESAMAAAAYNNAEKKASTAAQKAAQKAAKKAAKKAAKKTEEEaarkGASGGNSMAPLGQPPATHA-QLD 248
                  2488999988877899999998877777666666688888888888887777666554333333333222245555555555555555555553.333 PP

                  XX.XXX.XXXXXXXXX CS
  SRP-alpha_N 180 akeagptaedvsrrar 195
                  ++  ++ ae++ +r+ 
   KOO24836.1 249 TQ--QQLAEAIRQRQQ 262
                  33..344677777765 PP

>> Kei1  Inositolphosphorylceramide synthase subunit Kei1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.4   7.9    0.0017       3.8      88     158 ..     153     221 ..     151     265 .. 0.65

  Alignments for each domain:
  == domain 1  score: 7.4 bits;  conditional E-value: 0.0017
        Kei1  88 aytvlF.avdWflvleehdaaaaastagsasaeatagatapaavssaasatsasvsaatssslasavlqqEs 158
                 ++t  F a  W  ++e++ a aa++++++++++a+a  +a++   +a++a+++++++a+++++++a +++E+
  KOO24836.1 153 LWTSNFrASLWTSKVEKKAAVAAKKAEKESAMAAAAYNNAEK---KASTAAQKAAQKAAKKAAKKAAKKTEE 221
                 799999666788887777766666544444444443333333...344444444444444444444444443 PP

>> NARP1  NMDA receptor-regulated protein 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.4  17.6    0.0016       3.7     392     476 ..     175     258 ..     162     263 .. 0.78

  Alignments for each domain:
  == domain 1  score: 6.4 bits;  conditional E-value: 0.0016
                 GGG---HHHHHT-S-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--.......-------------S-SSSTTTT-S-HHHHHHH CS
       NARP1 392 akeeekeeaksaelseaerkklrkkakkaekkaekeeaekaekekekkaaekkakkedeeakkededplgekLvkteepLeeAlk 476
                 ak++eke+a+ a+  ++ +kk+   a+ka++ka+k++a+ka+k++e++aa+k a +  ++  +  + p  ++ + t++ L+eA++
  KOO24836.1 175 AKKAEKESAMAAAAYNNAEKKASTAAQKAAQKAAKKAAKKAAKKTEEEAARKGA-SGGNSMAPLGQPPATHAQLDTQQQLAEAIR 258
                 456667777777888888999999999999999999999999887766665555.55555666777799999999999*****97 PP

>> Coilin_N  Coilin N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.3   8.0     0.007        16      41     132 ..      83     226 ..      76     230 .. 0.64

  Alignments for each domain:
  == domain 1  score: 5.3 bits;  conditional E-value: 0.007
    Coilin_N  41 FklkrpsillLyldgclLpptEsirvlrdndcirV...........................................................klegs 80 
                 ++++r   + L ++gc L+ ++s+++     +  V                                                           k  + 
  KOO24836.1  83 TEINRA--IALEIEGCKLLGKQSLEI-----TMMVplpkelaekflrdelarelppshgaahgtqptsppakppraslwtsnfraslwtskvekKAAVA 174
                 555544..555566666666666665.....44555555566666666666666666666666666666666666666666666665555555556666 PP

    Coilin_N  81 etkleaqesededsresasksasttkqkkkkKrekkqeeqdeqkasqaakdk 132
                 ++k e++++  + + ++a+k+ast+ qk  +K  kk  ++  +k++++a+ k
  KOO24836.1 175 AKKAEKESAMAAAAYNNAEKKASTAAQKAAQKAAKKAAKKAAKKTEEEAARK 226
                 6777777777888888888888888888888888888888777777776655 PP

>> IHABP4_N  Intracellular hyaluronan-binding protein 4 N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.7  13.2    0.0046        10      36      99 ..     175     233 ..     164     286 .. 0.41

  Alignments for each domain:
  == domain 1  score: 6.7 bits;  conditional E-value: 0.0046
    IHABP4_N  36 ekkkkkreekenkgkrkagpkgaksaakaaaakagkkesqkerkkpkkegeeqpekprtpgvdr 99 
                 +kk++k++  ++++  ++++k+a++aa+ aa+ka+kk  +k  kk ++e++++  +     ++ 
  KOO24836.1 175 AKKAEKESAMAAAA-YNNAEKKASTAAQKAAQKAAKKAAKKAAKKTEEEAARKGASG----GNS 233
                 22222222222222.444445555555444444444444444444444333322222....221 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (431 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2215  (0.123543); expected 358.6 (0.02)
Passed bias filter:                      969  (0.0540465); expected 358.6 (0.02)
Passed Vit filter:                       180  (0.0100396); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.74u 0.32s 00:00:01.06 Elapsed: 00:00:00.46
# Mc/sec: 2821.49
//
Query:       KOO24837.1  [L=315]
Description: hypothetical protein Ctob_008802 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.5e-11   44.4   4.9    2.4e-11   43.8   4.9    1.3  1  zf-RING_2     Ring finger domain
      8e-10   38.4   4.3    1.3e-09   37.8   4.3    1.3  1  zf-C3HC4_2    Zinc finger, C3HC4 type (RING finger)
    6.9e-08   32.2   3.7    1.1e-07   31.6   3.7    1.4  1  zf-C3HC4      Zinc finger, C3HC4 type (RING finger)
    2.8e-06   26.8   2.2    5.6e-06   25.9   2.2    1.4  1  Zn_ribbon_17  Zinc-ribbon, C4HC2 type
    2.9e-06   26.9   1.7      5e-06   26.2   1.7    1.4  1  zf-RING_11    RING-like zinc finger
    8.9e-06   25.9   8.3    4.9e-05   23.5   8.3    2.0  1  zf-rbx1       RING-H2 zinc finger domain
      2e-05   24.3   3.2    3.1e-05   23.7   3.2    1.3  1  zf-C3HC4_3    Zinc finger, C3HC4 type (RING finger)
     0.0001   22.2   3.2    0.00017   21.5   3.2    1.4  1  zf-RING_5     zinc-RING finger domain
     0.0006   19.8   5.8     0.0012   18.8   5.8    1.5  1  zf-RING_UBOX  RING-type zinc-finger
     0.0067   15.7   0.9     0.0094   15.2   0.9    1.1  1  DUF2586       Protein of unknown function (DUF2586)
  ------ inclusion threshold ------
      0.013   14.2   2.5      0.017   13.8   2.5    1.1  1  AAA_13        AAA domain
      0.014   15.5   3.2      0.032   14.3   3.2    1.6  1  zf-ANAPC11    Anaphase-promoting complex subunit 11 RING-H2 f
      0.028   14.7   3.2      0.048   14.0   3.2    1.4  1  zf-RING-like  RING-like domain
      0.056   13.2   2.9       0.14   12.0   2.9    1.6  1  zf-RING_4     RING/Ubox like zinc-binding domain
       0.08   13.1   4.6       0.14   12.3   4.6    1.4  1  zf-C3HC4_4    zinc finger of C3HC4-type, RING
       0.19   11.9   2.7       0.29   11.3   2.7    1.3  1  FGase         N-formylglutamate amidohydrolase
       0.24   11.6   4.3       0.94    9.7   4.3    2.1  1  FANCL_C       FANCL C-terminal domain
       0.55   10.4   2.7       0.85    9.8   1.5    2.0  2  Zf_RING       KIAA1045 RING finger
       0.85    9.8   4.4          3    8.0   4.2    2.0  1  RINGv         RING-variant domain
        1.3    9.2   4.5          6    7.1   4.5    2.0  1  zf-UDP        Zinc-binding RING-finger
        3.4    7.6   5.8         15    5.5   5.9    1.9  2  Prok-RING_4   Prokaryotic RING finger family 4
          8    6.6   6.7         22    5.2   6.7    1.8  1  zf-C3H2C3     Zinc-finger


Domain annotation for each model (and alignments):
>> zf-RING_2  Ring finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.8   4.9   2.9e-14   2.4e-11       2      44 .]      54      96 ..      53      96 .. 0.96

  Alignments for each domain:
  == domain 1  score: 43.8 bits;  conditional E-value: 2.9e-14
   zf-RING_2  2 eCpICleelssadsvlllpCgHvfhreClerwlrssst.CPlCr 44
                +C+ICl+ ++s++ v+l  CgH +h +Cl  wl++ ++ CP+Cr
  KOO24837.1 54 TCAICLDIIESSQGVPLS-CGHRYHATCLIPWLQKGNRsCPTCR 96
                7***************88.*****************99*****9 PP

>> zf-C3HC4_2  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.8   4.3   1.6e-12   1.3e-09       2      40 .]      55      95 ..      54      95 .. 0.94

  Alignments for each domain:
  == domain 1  score: 37.8 bits;  conditional E-value: 1.6e-12
  zf-C3HC4_2  2 CpiCldmlkdpsvvt.pCgHvfCqkCilrsLeekn.eCPlC 40
                C+iCld ++    v   CgH++++ C+ ++L+++n +CP+C
  KOO24837.1 55 CAICLDIIESSQGVPlSCGHRYHATCLIPWLQKGNrSCPTC 95
                *********98777679************************ PP

>> zf-C3HC4  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.6   3.7   1.4e-10   1.1e-07       1      41 []      55      95 ..      55      95 .. 0.97

  Alignments for each domain:
  == domain 1  score: 31.6 bits;  conditional E-value: 1.4e-10
                -TTT-S--SS-E..E-TTS--B-CHHHHHHHHCTSSB--TTT CS
    zf-C3HC4  1 CpiCleeakepn.elleCkHsfCskCirkilksrkkvkCPlC 41
                C+iCl+ ++  +  +l C+H+++ +C+  +l+ +++++CP+C
  KOO24837.1 55 CAICLDIIESSQgVPLSCGHRYHATCLIPWLQ-KGNRSCPTC 95
                *********99989******************.********* PP

>> Zn_ribbon_17  Zinc-ribbon, C4HC2 type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.9   2.2   6.9e-09   5.6e-06       3      47 ..      51      94 ..      49      96 .. 0.94

  Alignments for each domain:
  == domain 1  score: 25.9 bits;  conditional E-value: 6.9e-09
  Zn_ribbon_17  3 llksCayCelavkgrvvlcgvCeHvlHasCarewfenddlaeCps 47
                    ++Ca+C   ++ +  ++ +C+H  Ha C+  w+++++  +Cp+
    KOO24837.1 51 EEETCAICLDIIESSQGVPLSCGHRYHATCLIPWLQKGN-RSCPT 94
                  5689***********************************.99*97 PP

>> zf-RING_11  RING-like zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.2   1.7   6.1e-09     5e-06       2      29 .]      55      81 ..      54      81 .. 0.93

  Alignments for each domain:
  == domain 1  score: 26.2 bits;  conditional E-value: 6.1e-09
  zf-RING_11  2 CsICLeefkpgqalfilpCsHtFHfkCI 29
                C+ICL+ ++ +q +  l+C+H +H  C+
  KOO24837.1 55 CAICLDIIESSQGV-PLSCGHRYHATCL 81
                *************9.559*********5 PP

>> zf-rbx1  RING-H2 zinc finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.5   8.3   6.1e-08   4.9e-05      28      55 .]      68      96 ..      50      96 .. 0.73

  Alignments for each domain:
  == domain 1  score: 23.5 bits;  conditional E-value: 6.1e-08
     zf-rbx1 28 vlGeCgHaFHlhCiskWlkt.rkvCPlcr 55
                v  +CgH +H  C+  Wl++ +++CP+cr
  KOO24837.1 68 VPLSCGHRYHATCLIPWLQKgNRSCPTCR 96
                3337****************9999****8 PP

>> zf-C3HC4_3  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.7   3.2   3.8e-08   3.1e-05       2      46 ..      52      98 ..      51     101 .. 0.90

  Alignments for each domain:
  == domain 1  score: 23.7 bits;  conditional E-value: 3.8e-08
                GSB-TTTSS..SBS-EEETTEEEEEE-HHHHHHHHH.TT-B-TTT--B CS
  zf-C3HC4_3  2 deeCviCle..rprnvvllpCgHlvlCeeCaekllk.rkkkCpiCrrp 46
                +e+C iCl+  + ++ v l CgH  +  +C+  +l+  +++Cp Cr +
  KOO24837.1 52 EETCAICLDiiESSQGVPLSCGHR-YHATCLIPWLQkGNRSCPTCRNK 98
                789******7778889********.99*****99988*********86 PP

>> zf-RING_5  zinc-RING finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.5   3.2     2e-07   0.00017       2      44 .]      55      97 ..      54      97 .. 0.95

  Alignments for each domain:
  == domain 1  score: 21.5 bits;  conditional E-value: 2e-07
   zf-RING_5  2 CnkCfeklskeekfyltsCgHifCekClkkll.ekeavCpiCrk 44
                C +C + + ++++ + +sCgH ++ +Cl   l + ++ Cp+Cr+
  KOO24837.1 55 CAICLDII-ESSQGVPLSCGHRYHATCLIPWLqKGNRSCPTCRN 97
                ********.9********************9999********95 PP

>> zf-RING_UBOX  RING-type zinc-finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.8   5.8   1.5e-06    0.0012       1      39 []      55      93 ..      55      95 .. 0.84

  Alignments for each domain:
  == domain 1  score: 18.8 bits;  conditional E-value: 1.5e-06
  zf-RING_UBOX  1 CpIClelft....dPlvlpCGHtFCreClwelskslegafkCP 39
                  C ICl+  +     P + +CGH ++  Cl  +   ++g+++CP
    KOO24837.1 55 CAICLDIIEssqgVP-L-SCGHRYHATCL--IPWLQKGNRSCP 93
                  ******999988888.5.8**********..555777777777 PP

>> DUF2586  Protein of unknown function (DUF2586)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.9   1.2e-05    0.0094      68     184 ..     143     265 ..     126     271 .. 0.81

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 1.2e-05
     DUF2586  68 gqnwsaavlvlaegd.awaeavdaAqetasveavvltepvatkaeiealqakaeellak...y..grrvfflaavagidaetesWseyvealtalqkgv 160
                 +q w a v +l+e++   ++av++A++ +    v   e   ++  +++ q  +++l ++   y  + +++ +a  ++   e + W+ey ++l++l+   
  KOO24837.1 143 NQTWDAWVETLRESEsLKRKAVSKAKALVVRKRVDAGERREAQRLVRQHQGWKSKLQKRkkdYdeSEKQLRIAERQARRDERKVWDEYYDELAKLTGKR 241
                 7999999*99998884567899999999988888888888888889998888888776422242245667777777777799***************** PP

     DUF2586 161 aadqvalvpqlfgndvGvlaGRLc 184
                 +++ v+ v++l g +  vl+ R +
  KOO24837.1 242 TSKLVQAVANLSGFQRSVLTTRKA 265
                 ***************999998865 PP

>> AAA_13  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   2.5   2.1e-05     0.017     305     471 ..     118     285 ..     102     288 .. 0.82

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 2.1e-05
      AAA_13 305 klkavsdeasensafeedkeelkaea.ealeeqLkglqraleaKrkepfksvelesvkakiesikklvaeineliakhNekvanleeeke...eakkkl 399
                  ++++ +  +e+ ++  ++++l++e  ++ +++ ++l++  + Krk ++k ++  +v ++++    +  e+++l+++h    ++l+++k+   e +k+l
  KOO24837.1 118 GYESGYTN-DEDDESGTAHQQLHDEWnQTWDAWVETLRESESLKRKAVSK-AKALVVRKRVD--AGERREAQRLVRQHQGWKSKLQKRKKdydESEKQL 212
                 55555554.45677888999999999567789999999999999998888.88889999999..5667899999***9998888888887222556677 PP

      AAA_13 400 elhlveeleseldeykkkykklekaieklekelkeeeaelkkleeeikeLekqlrdekpaaeeinkeLkaf.G 471
                 +  + +  ++e +  ++ y++l+k   k + +l ++ a+l   +  +   +k + + ++ +  +++eL+++ G
  KOO24837.1 213 RIAERQARRDERKVWDEYYDELAKLTGKRTSKLVQAVANLSGFQRSVLTTRKATDQAQRKVRRVESELARMvG 285
                 77777777777777779999999999*******************************************9988 PP

>> zf-ANAPC11  Anaphase-promoting complex subunit 11 RING-H2 finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   3.2     4e-05     0.032      47      79 ..      67      97 ..      48     100 .. 0.77

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 4e-05
                EEEBTTS-EEEHHHHHHHHHHHSTSSB-TTTSS CS
  zf-ANAPC11 47 lvlGkckhnfhlhcilkwletetskglcpmcrq 79
                 v  +c h +h+ c++ wl++   +  cp cr+
  KOO24837.1 67 GVPLSCGHRYHATCLIPWLQK--GNRSCPTCRN 97
                55568**************86..5678****97 PP

>> zf-RING-like  RING-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   3.2   5.9e-05     0.048       1      43 []      55      95 ..      55      95 .. 0.92

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 5.9e-05
  zf-RING-like  1 CeaCkeivtqGvrCsnesCnvrlHvdCfqhyirthsskkCpkC 43
                  C++C +i+   +  +  sC  r+H  C+   + ++ +++Cp+C
    KOO24837.1 55 CAICLDIIESSQGVP-LSCGHRYHATCLIPWL-QKGNRSCPTC 95
                  999999998888888.89************99.9999****** PP

>> zf-RING_4  RING/Ubox like zinc-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   2.9   0.00017      0.14      13      45 ..      65      97 ..      53      98 .. 0.78

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 0.00017
   zf-RING_4 13 kdlkpCeCgyqiClfCyhrileeeegrCPaCre 45
                ++  p +Cg++    C+   l++ +  CP Cr+
  KOO24837.1 65 SQGVPLSCGHRYHATCLIPWLQKGNRSCPTCRN 97
                3457889*************************7 PP

>> zf-C3HC4_4  zinc finger of C3HC4-type, RING
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   4.6   0.00017      0.14       1      42 []      55      95 ..      55      95 .. 0.88

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 0.00017
  zf-C3HC4_4  1 CPiCldYLe..kPvsleCGhsfClsCisslqkepdgeqllCplC 42
                C iCld +e  + v l+CGh +  +C+  + ++ +    +Cp C
  KOO24837.1 55 CAICLDIIEssQGVPLSCGHRYHATCLIPWLQKGNR---SCPTC 95
                99******8335799*************99999866...6**99 PP

>> FGase  N-formylglutamate amidohydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   2.7   0.00036      0.29      23     127 ..     136     246 ..     123     277 .. 0.75

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00036
                 -HHHHTSTTTS-TTHHHHHH.......HHHHEEESS-TTT--TTS-T.TSTTSS-SEETTEE-GGG.............T--HHHHHHHHHH..THHHH CS
       FGase  23 aldeaellraeDigvdelyrfa.....gaaalqarfsRlviDlNRapddldealpeasglgliprntfdgepiyrr...pldaaeveerier..yyrpY 111
                 ++ ++e  + +D++v+ l +++      +++ +a + R  +D      +++  +  + + +  + + +++++ y++   +l  ae+++r+++  +++ Y
  KOO24837.1 136 QQLHDEWNQTWDAWVETLRESEslkrkAVSKAKALVVRKRVDAGERR-EAQRLV--R-QHQGWKSKLQKRKKDYDEsekQLRIAERQARRDErkVWDEY 230
                 55566777899999999999666776666669999999999985443.344443..2.223344444567788888888888888888887666***** PP

                 HHHHHHHHHHHH.HT- CS
       FGase 112 haalaellarlrarhg 127
                 +++la+l  ++ ++  
  KOO24837.1 231 YDELAKLTGKRTSKLV 246
                 ******9988776644 PP

>> FANCL_C  FANCL C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   4.3    0.0012      0.94       4      45 ..      54      89 ..      51      98 .. 0.76

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 0.0012
                S-SSS--SS-TT-----B--S-TT----B-SGGGHHHHHHHH CS
     FANCL_C  4 eCgiCyayrldsgevpdisCdnekCnkkfHsaCLkeWlrslk 45
                 C iC+    +s+ vp       +C++++H++CL  Wl++ +
  KOO24837.1 54 TCAICLDIIESSQGVP------LSCGHRYHATCLIPWLQKGN 89
                6777776666566666......47**************9754 PP

>> Zf_RING  KIAA1045 RING finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   1.5     0.001      0.85       2      35 ..      49      82 ..      48      98 .. 0.83
   2 ?   -2.8   0.0       8.9   7.2e+03      46      59 ..     274     287 ..     262     289 .. 0.63

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.001
     Zf_RING  2 veedelCeiC.evytaeelypCRvCtkvfHegClr 35
                +ee+e+C iC ++ ++++ +p   C + +H +Cl 
  KOO24837.1 49 PEEEETCAIClDIIESSQGVPL-SCGHRYHATCLI 82
                789*******888888888886.69********96 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 8.9
     Zf_RING  46 lellkrAktetGWs 59 
                   +  +    +GWs
  KOO24837.1 274 RRVESELARMVGWS 287
                 44555556778998 PP

>> RINGv  RING-variant domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.0   4.2    0.0037         3       1      48 []      55      95 ..      55      95 .. 0.75

  Alignments for each domain:
  == domain 1  score: 8.0 bits;  conditional E-value: 0.0037
                ETTTTEE-SSSS--B-SS--STCCCSB-HHHHHHHHHHTCT-SB-TTT CS
       RINGv  1 CriCleeeeeseplispCkCrGslklvHesClekWldekeantqCeiC 48
                C iCl+  e+s+    p +C    +  H +Cl  Wl++   n++C  C
  KOO24837.1 55 CAICLDIIESSQG--VPLSCG---HRYHATCLIPWLQK--GNRSCPTC 95
                7777777777663..344442...467**********9..999**999 PP

>> zf-UDP  Zinc-binding RING-finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.1   4.5    0.0073         6       3      77 ..      47     112 ..      45     113 .. 0.75

  Alignments for each domain:
  == domain 1  score: 7.1 bits;  conditional E-value: 0.0073
      zf-UDP   3 lkdlngqiCqiCgddvgltedgelFvacnecafpvcrpcyeyerkdgnqsCPqCktrykrlkgsprvegdeeedd 77 
                 ++  +++ C iC d ++ ++          c+     +c+    + gn+sCP C+ +  r     r+  d++edd
  KOO24837.1  47 VQPEEEETCAICLDIIESSQGVP-----LSCGHRYHATCLIPWLQKGNRSCPTCRNKPPR----ERLGDDDSEDD 112
                 55667788999999888765432.....467888888888888899*********99988....56666666666 PP

>> Prok-RING_4  Prokaryotic RING finger family 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.1   0.1         1   8.5e+02      28      41 ..      50      63 ..      47      68 .. 0.69
   2 ?    5.5   5.9     0.018        15      13      39 ..      69      98 ..      55     103 .. 0.67

  Alignments for each domain:
  == domain 1  score: -0.1 bits;  conditional E-value: 1
  Prok-RING_4 28 kdlssCPlCqrris 41
                 ++ ++C +C   i+
   KOO24837.1 50 EEEETCAICLDIIE 63
                 55668888887765 PP

  == domain 2  score: 5.5 bits;  conditional E-value: 0.018
  Prok-RING_4 13 lepCgHlvCkeCfdsk..dls..sCPlCqrr 39
                   +CgH    +C+  +  +    sCP C+++
   KOO24837.1 69 PLSCGHRYHATCLIPWlqK-GnrSCPTCRNK 98
                 459**99888888777432.146*****986 PP

>> zf-C3H2C3  Zinc-finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.2   6.7     0.027        22      14      34 ..      69      95 ..      53      96 .. 0.70

  Alignments for each domain:
  == domain 1  score: 5.2 bits;  conditional E-value: 0.027
   zf-C3H2C3 14 aysCkHlvHakC.a.....deevCPkC 34
                  sC H +Ha C        +  CP+C
  KOO24837.1 69 PLSCGHRYHATClIpwlqkGNRSCPTC 95
                569*********432332224679999 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (315 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1823  (0.101679); expected 358.6 (0.02)
Passed bias filter:                      694  (0.0387082); expected 358.6 (0.02)
Passed Vit filter:                        88  (0.00490825); expected 17.9 (0.001)
Passed Fwd filter:                        24  (0.00133861); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              22  [number of targets reported over threshold]
# CPU time: 0.54u 0.29s 00:00:00.83 Elapsed: 00:00:00.44
# Mc/sec: 2137.89
//
Query:       KOO24838.1  [L=1310]
Description: hypothetical protein Ctob_008803 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1310 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       516  (0.0287802); expected 358.6 (0.02)
Passed bias filter:                      407  (0.0227007); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.77u 0.29s 00:00:01.06 Elapsed: 00:00:00.43
# Mc/sec: 9077.45
//
Query:       KOO24839.1  [L=433]
Description: ATPase family aaa domain-containing protein 2b-like protein, partial [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    7.7e-39  133.1   0.0    1.2e-38  132.6   0.0    1.3  1  AAA              ATPase family associated with various cellul
    2.7e-13   49.5   0.4    6.6e-13   48.2   0.4    1.6  1  AAA_lid_3        AAA+ lid domain
    6.3e-06   26.7   0.8    6.4e-05   23.4   0.6    2.3  1  AAA_16           AAA ATPase domain
    2.3e-05   24.1   0.1    6.9e-05   22.6   0.1    1.9  1  Shugoshin_C      Shugoshin C terminus
    6.3e-05   22.8   0.0    0.00011   22.0   0.0    1.3  1  IstB_IS21        IstB-like ATP binding protein
    7.1e-05   23.0   0.0    0.00015   21.9   0.0    1.5  1  AAA_2            AAA domain (Cdc48 subfamily)
    0.00091   19.5   0.3      0.025   14.8   0.3    2.4  1  AAA_22           AAA domain
     0.0022   17.8   0.0     0.0051   16.5   0.0    1.6  1  AAA_30           AAA domain
     0.0032   17.5   0.0      0.013   15.5   0.0    2.1  1  AAA_5            AAA domain (dynein-related subfamily)
     0.0063   16.7   0.0      0.011   15.9   0.0    1.6  1  AAA_33           AAA domain
  ------ inclusion threshold ------
      0.014   15.9   0.0      0.029   14.9   0.0    1.6  1  AAA_18           AAA domain
      0.015   15.1   0.0      0.089   12.5   0.0    2.0  1  RuvB_N           Holliday junction DNA helicase RuvB P-loop d
      0.023   14.8   0.0      0.043   13.9   0.0    1.4  1  Sigma54_activ_2  Sigma-54 interaction domain
      0.023   14.9   0.1      0.053   13.8   0.0    1.7  1  AAA_28           AAA domain
      0.024   14.0   0.1      0.042   13.2   0.1    1.3  1  Mg_chelatase     Magnesium chelatase, subunit ChlI
      0.026   13.8   0.0      0.037   13.2   0.0    1.1  1  TIP49            TIP49 P-loop domain
      0.029   14.0   0.0      0.061   12.9   0.0    1.6  1  AAA_25           AAA domain
      0.034   13.4   0.0      0.051   12.8   0.0    1.2  1  DUF2075          Uncharacterized conserved protein (DUF2075)
      0.042   13.6   0.0      0.078   12.8   0.0    1.4  1  AAA_11           AAA domain
      0.047   13.7   0.0      0.071   13.1   0.0    1.2  1  ResIII           Type III restriction enzyme, res subunit
      0.082   13.3   0.0       0.14   12.6   0.0    1.3  1  RNA_helicase     RNA helicase
      0.095   12.4   0.0       0.23   11.1   0.0    1.6  1  Sigma54_activat  Sigma-54 interaction domain
       0.14   11.7   0.0       0.23   11.0   0.0    1.2  1  AAA_7            P-loop containing dynein motor region
       0.16   11.0   0.0       0.25   10.4   0.0    1.2  1  Parvo_NS1        Parvovirus non-structural protein NS1


Domain annotation for each model (and alignments):
>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  132.6   0.0   1.6e-41   1.2e-38       1     131 [.     225     359 ..     225     360 .. 0.95

  Alignments for each domain:
  == domain 1  score: 132.6 bits;  conditional E-value: 1.6e-41
                 EEEESSTTSSHHHHHHHHHHHHT.....HEEEEEETTTCSSSSTTHHHHHHHHHHHHHHHTSTSEEEEEETGGGHHHHHTTCCCHHHHHHHHHHHHHHH CS
         AAA   1 vllyGppGtGKTllakavakelg.....vefleisgsellskyvgesekkirelfkeakekakpsilfiDEidalaksrsgseseeeervvnqLlteld 94 
                 vl++GppGtGKTl+a+a+a++++     v f+  +g+++lsk+vge+ek++r lf+ea + + p i+f+DE+d la+ rs++++  + ++v++Ll+ +d
  KOO24839.1 225 VLFHGPPGTGKTLVARALASTCSsagrpVAFFMRKGADVLSKWVGEAEKQLRLLFEEATRLQ-PAIIFFDELDGLAPVRSSKQDYIHASIVSTLLALMD 322
                 79*******************965556688*******************************8.************************************ PP

                 HTTTSSSTEEEEEEESSGGGSTHHHHS.TTSSEEEETT CS
         AAA  95 gvkkkeskvivigatnrpdkldpallr.gRfdrkieie 131
                 g++++ ++v++igatnr+d ld+al+r gRfdr+++++
  KOO24839.1 323 GLDSR-GQVLLIGATNRIDALDSALRRpGRFDRELQFS 359
                 ****7.66**************************9986 PP

>> AAA_lid_3  AAA+ lid domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.2   0.4   8.9e-16   6.6e-13       3      38 ..     385     420 ..     384     426 .. 0.91

  Alignments for each domain:
  == domain 1  score: 48.2 bits;  conditional E-value: 8.9e-16
   AAA_lid_3   3 dlkeLAerTeGySGADlaalcreAallAlrrgikei 38 
                 +l++LA+rT+G++GADl+alc eAal+Alr  ++ei
  KOO24839.1 385 QLDALARRTHGFCGADLKALCAEAALRALRGAFPEI 420
                 699***************************988874 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.4   0.6   8.5e-08   6.4e-05      24     132 ..     222     326 ..     213     333 .. 0.59

  Alignments for each domain:
  == domain 1  score: 23.4 bits;  conditional E-value: 8.5e-08
      AAA_16  24 pelvllsGesGvGKsslvrellralekd...ggiflrgkcdqlesaipysalaqalareellrqlldeaesaeleawrekleealaavpelagaea... 116
                 p+ vl++G++G+GK+ ++r+l+   + +    ++f+r  +d l      s ++  + + + lr l +ea+  +++      ++ la   ++++++    
  KOO24839.1 222 PRGVLFHGPPGTGKTLVARALASTCSSAgrpVAFFMRKGADVL------SKWVGEA-E-KQLRLLFEEATRLQPAIIFFDELDGLA---PVRSSKQdyi 309
                 499*******************855555432566688888888......7777777.3.455555555333333333332223233...2222222233 PP

      AAA_16 117 .srllellkrllallsr 132
                   ++  +l +l++ l +
  KOO24839.1 310 hASIVSTLLALMDGLDS 326
                 46666666666655555 PP

>> Shugoshin_C  Shugoshin C terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.6   0.1   9.2e-08   6.9e-05       1      19 [.       4      22 ..       4      23 .. 0.94

  Alignments for each domain:
  == domain 1  score: 22.6 bits;  conditional E-value: 9.2e-08
  Shugoshin_C  1 gRpsRrarkvvsYKEPSLn 19
                 gR++ r++++vsYKEP+L+
   KOO24839.1  4 GRRQTRRKSAVSYKEPNLH 22
                 89****************8 PP

>> IstB_IS21  IstB-like ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.0   0.0   1.5e-07   0.00011      49     130 ..     224     309 ..     218     317 .. 0.83

  Alignments for each domain:
  == domain 1  score: 22.0 bits;  conditional E-value: 1.5e-07
   IstB_IS21  49 nivllGpsGvGKshlaialgveavraglsvlfvr...vedLveelkrarrdgklaralkrllkvdllilDdl.gllpldqaeaell 130
                 ++++ Gp+G+GK+ +a al+     ag  v f+    ++ L + +  a+++ +l  + ++ l+++++  D+l gl p+ + ++ ++
  KOO24839.1 224 GVLFHGPPGTGKTLVARALASTCSSAGRPVAFFMrkgADVLSKWVGEAEKQLRLLFEEATRLQPAIIFFDELdGLAPVRSSKQDYI 309
                 68999*************************99852324557778999999999999999999999999999877888877766665 PP

>> AAA_2  AAA domain (Cdc48 subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.9   0.0   2.1e-07   0.00015       6     105 ..     225     323 ..     221     328 .. 0.78

  Alignments for each domain:
  == domain 1  score: 21.9 bits;  conditional E-value: 2.1e-07
                 EEEE--TTSSHHHHHHHHHHHTT-....-EEEEEGGG-------THHHHHHHHHTTT-..HHHHTTS.....EEEEETGGG-------------HHHHH CS
       AAA_2   6 illlgptgvGktelakalaellfvkkekkliradaselleeeevehlvsrligappgy..vgaeegG.....ivllDEidKihpkessgadvSregVqr 97 
                 +l+ gp g+Gkt++a+ala++ + +  ++++ + +++ +       ++s+ +g+++      +ee       i+++DE+d  +p +ss++d  +  ++ 
  KOO24839.1 225 VLFHGPPGTGKTLVARALASTCS-SAGRPVAFF-MRKGAD------VLSKWVGEAEKQlrLLFEEATrlqpaIIFFDELDGLAPVRSSKQDYIHASIVS 315
                 689*******************9.666666554.555555......45555444443300345666666888*************************** PP

                 HHHHHHH- CS
       AAA_2  98 dLLqileg 105
                  LL +++g
  KOO24839.1 316 TLLALMDG 323
                 ******98 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.3   3.4e-05     0.025       9      29 ..     226     246 ..     221     342 .. 0.75

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 3.4e-05
      AAA_22   9 vvtGesGtGKTtllrrlleql 29 
                 + +G++GtGKT+++r l+++ 
  KOO24839.1 226 LFHGPPGTGKTLVARALASTC 246
                 689**************9885 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.0   6.8e-06    0.0051      19      64 ..     223     266 ..     212     304 .. 0.77

  Alignments for each domain:
  == domain 1  score: 16.5 bits;  conditional E-value: 6.8e-06
      AAA_30  19 rvavltGpAGtGKttalkalreaweaaggrviglAptgkaAkvLae 64 
                 r ++ +Gp+GtGKt + +al+ +  +ag++v+ +    k A+vL++
  KOO24839.1 223 RGVLFHGPPGTGKTLVARALASTCSSAGRPVAFFMR--KGADVLSK 266
                 567889**********************99988754..34555555 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.0   1.7e-05     0.013       2      75 ..     225     296 ..     224     348 .. 0.72

  Alignments for each domain:
  == domain 1  score: 15.5 bits;  conditional E-value: 1.7e-05
                 EEEE--SSSSHHHHHHHGGGGB...S--EEEEE--TT--HHHHH--B--.........--------..G-SEEEEESGG CS
       AAA_5   2 vlLvGppGtgKselaerlaaal...nreveyvqltrdtteedlkgrreikngttslvdsplvraar..egeilvlDEve 75 
                 vl  GppGtgK+ +a+ la+     +r+v   +     + +d++ ++    g+++ +   l ++a+  +++i+++DE++
  KOO24839.1 225 VLFHGPPGTGKTLVARALASTCssaGRPVAFFMR----KGADVLSKWV---GEAEKQLRLLFEEATrlQPAIIFFDELD 296
                 8999***************998654444433332....2366666666...5666666666666666667777777766 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.0   1.5e-05     0.011       2      22 ..     225     245 ..     225     357 .. 0.84

  Alignments for each domain:
  == domain 1  score: 15.9 bits;  conditional E-value: 1.5e-05
      AAA_33   2 vllvGlpGsGKstlaerllkk 22 
                 vl++G+pG+GK+ +a+ l+  
  KOO24839.1 225 VLFHGPPGTGKTLVARALAST 245
                 79***************9843 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.9   0.0   3.9e-05     0.029       1      34 [.     225     259 ..     225     298 .. 0.78

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 3.9e-05
      AAA_18   1 IlltGtpGvGKttlakeLskrlgf.gvnlrdvake 34 
                 +l  G+pG+GKt +a++L++ + + g+ + +  ++
  KOO24839.1 225 VLFHGPPGTGKTLVARALASTCSSaGRPVAFFMRK 259
                 5778**************99984456555555544 PP

>> RuvB_N  Holliday junction DNA helicase RuvB P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   0.00012     0.089      36      98 ..     225     287 ..     219     357 .. 0.70

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 0.00012
      RuvB_N  36 vllyGpPGlGkttlakiiakelgvklkitsgPvlekagd.laalltnleekdvlfideihrlsr 98 
                 vl++GpPG Gkt +a+ +a+   +  +  +   + k +d l+  + + e++  l+ +e  rl++
  KOO24839.1 225 VLFHGPPGTGKTLVARALASTCSSAGRPVAF-FMRKGADvLSKWVGEAEKQLRLLFEEATRLQP 287
                 9**************9999987776655443.34444441333444444444455566666665 PP

>> Sigma54_activ_2  Sigma-54 interaction domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.0   5.8e-05     0.043      24      83 ..     225     287 ..     215     302 .. 0.78

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 5.8e-05
                      EEEEEETT--HHHHHHCC--TTS-EE--..SSTTHHHH-HHHHHHHTTTSE.EEEEE-TT--H CS
  Sigma54_activ_2  24 vfltGekGsgkelvArlLhknsgpwlei..fvverlaklpldlleqakggt.Lylkdiadlsk 83 
                      v+  G++G+gk+lvAr+L++  +    +  f + ++a+  ++++ +a+ ++ L++++   l++
       KOO24839.1 225 VLFHGPPGTGKTLVARALASTCSSAGRPvaFFMRKGADVLSKWVGEAEKQLrLLFEEATRLQP 287
                      8999**************987555544411567899999999998885553377777766665 PP

>> AAA_28  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.0   7.1e-05     0.053       2      35 ..     225     264 ..     224     290 .. 0.72

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 7.1e-05
      AAA_28   2 ivitGgestGKTtlleaLaar....gypvv..pEaareil 35 
                 + + G+++tGKT +++aLa++    g pv    + + ++l
  KOO24839.1 225 VLFHGPPGTGKTLVARALASTcssaGRPVAffMRKGADVL 264
                 6799***************776667777654455555555 PP

>> Mg_chelatase  Magnesium chelatase, subunit ChlI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.1   5.6e-05     0.042      25      44 ..     225     244 ..     218     255 .. 0.89

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 5.6e-05
  Mg_chelatase  25 lllvGppGsGKtmlakrlps 44 
                   +l+ GppG+GKt++a++l+s
    KOO24839.1 225 VLFHGPPGTGKTLVARALAS 244
                   79**************9986 PP

>> TIP49  TIP49 P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.0     5e-05     0.037      51      97 ..     223     272 ..     215     284 .. 0.82

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 5e-05
                 XXXXXXXXXXXXXXXXXXXXXXXXX...XXXXXXXXXXXXXXXXXXXXXX CS
       TIP49  51 ravLlaGpsgtGktalaiaiskelg...edvpfvalsgsevyslevkkte 97 
                 r+vL+ Gp+gtGkt +a a++   +   + v f + +g++v s  v  +e
  KOO24839.1 223 RGVLFHGPPGTGKTLVARALASTCSsagRPVAFFMRKGADVLSKWVGEAE 272
                 89***************999876543227899999999999998776665 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   8.1e-05     0.061      36      71 ..     225     260 ..     219     322 .. 0.86

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 8.1e-05
      AAA_25  36 allaGapgtGKttlaldlalava.tGkpwlgpvapeq 71 
                 +l+ G+pgtGKt +a  la +++  G+p++  +  + 
  KOO24839.1 225 VLFHGPPGTGKTLVARALASTCSsAGRPVAF-FMRKG 260
                 5789******************999999877.33344 PP

>> DUF2075  Uncharacterized conserved protein (DUF2075)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0   6.8e-05     0.051       5      42 ..     226     261 ..     223     294 .. 0.84

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 6.8e-05
     DUF2075   5 lVtGvaGtGKtvvllnllaeleddeeertavylsvNhp 42 
                 l +G +GtGKt+v+ +l+ ++  ++ +r ++++++ ++
  KOO24839.1 226 LFHGPPGTGKTLVARALASTC--SSAGRPVAFFMRKGA 261
                 669******************..888888888776555 PP

>> AAA_11  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0    0.0001     0.078      20      41 ..     225     246 ..     217     278 .. 0.82

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 0.0001
      AAA_11  20 tliqGPPGtgKTktivellsql 41 
                 +l++GPPGtgKT +  +l s  
  KOO24839.1 225 VLFHGPPGTGKTLVARALASTC 246
                 699*********9998888776 PP

>> ResIII  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.0   9.5e-05     0.071      24      75 ..     222     272 ..     195     314 .. 0.82

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 9.5e-05
                 TSEEEEEESTTSTHHHHHHHHHHHH-S.....-EEEEESSHHHHHHHHHHGG CS
      ResIII  24 dkrglikmaTGtGKTlvaaklierllkkgkeekflflvprkslleqtleefk 75 
                  + +l++ + GtGKTlva +l+  ++++g+   ++f+  + ++l+++  e +
  KOO24839.1 222 PRGVLFHGPPGTGKTLVARALASTCSSAGR-PVAFFMRKGADVLSKWVGEAE 272
                 56788*******************999755.577778888899999986654 PP

>> RNA_helicase  RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   0.00019      0.14       1      24 [.     225     248 ..     225     276 .. 0.79

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 0.00019
  RNA_helicase   1 iwlyGpsgeGKStlakeLakallk 24 
                   ++++Gp+g+GK+++a+ La++ ++
    KOO24839.1 225 VLFHGPPGTGKTLVARALASTCSS 248
                   689**************9988774 PP

>> Sigma54_activat  Sigma-54 interaction domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   0.00031      0.23      24      52 ..     224     252 ..     213     262 .. 0.85

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00031
                      -EEEECSTTSSHHHHHHHHHHHSTTTTS- CS
  Sigma54_activat  24 svlitGesGtGKellaraiheaskrkekp 52 
                       vl +G  GtGK+l+ara+ ++ + + +p
       KOO24839.1 224 GVLFHGPPGTGKTLVARALASTCSSAGRP 252
                      69*****************9988777766 PP

>> AAA_7  P-loop containing dynein motor region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   0.00031      0.23      33      58 ..     222     247 ..     212     258 .. 0.82

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00031
       AAA_7  33 kkpvllvGptGtGKtviikdllkkld 58 
                  + vl+ Gp GtGKt++++ l ++++
  KOO24839.1 222 PRGVLFHGPPGTGKTLVARALASTCS 247
                 5789*************999887765 PP

>> Parvo_NS1  Parvovirus non-structural protein NS1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.0   0.00034      0.25     117     140 ..     225     248 ..     218     251 .. 0.88

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00034
   Parvo_NS1 117 vwfyGpantGktnlaeaIakavpl 140
                 v+f+Gp+ tGkt +a+a+a ++ +
  KOO24839.1 225 VLFHGPPGTGKTLVARALASTCSS 248
                 89*****************99875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (433 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       368  (0.0205254); expected 358.6 (0.02)
Passed bias filter:                      337  (0.0187964); expected 358.6 (0.02)
Passed Vit filter:                        76  (0.00423894); expected 17.9 (0.001)
Passed Fwd filter:                        24  (0.00133861); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              24  [number of targets reported over threshold]
# CPU time: 0.60u 0.30s 00:00:00.89 Elapsed: 00:00:00.49
# Mc/sec: 2667.03
//
Query:       KOO24840.1  [L=315]
Description: hypothetical protein Ctob_008806 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.5e-11   44.4   4.9    2.4e-11   43.8   4.9    1.3  1  zf-RING_2     Ring finger domain
      8e-10   38.4   4.3    1.3e-09   37.8   4.3    1.3  1  zf-C3HC4_2    Zinc finger, C3HC4 type (RING finger)
    6.9e-08   32.2   3.7    1.1e-07   31.6   3.7    1.4  1  zf-C3HC4      Zinc finger, C3HC4 type (RING finger)
    2.8e-06   26.8   2.2    5.6e-06   25.9   2.2    1.4  1  Zn_ribbon_17  Zinc-ribbon, C4HC2 type
    2.9e-06   26.9   1.7      5e-06   26.2   1.7    1.4  1  zf-RING_11    RING-like zinc finger
    8.9e-06   25.9   8.3    4.9e-05   23.5   8.3    2.0  1  zf-rbx1       RING-H2 zinc finger domain
      2e-05   24.3   3.2    3.1e-05   23.7   3.2    1.3  1  zf-C3HC4_3    Zinc finger, C3HC4 type (RING finger)
     0.0001   22.2   3.2    0.00017   21.5   3.2    1.4  1  zf-RING_5     zinc-RING finger domain
     0.0006   19.8   5.8     0.0012   18.8   5.8    1.5  1  zf-RING_UBOX  RING-type zinc-finger
     0.0067   15.7   0.9     0.0094   15.2   0.9    1.1  1  DUF2586       Protein of unknown function (DUF2586)
  ------ inclusion threshold ------
      0.013   14.2   2.5      0.017   13.8   2.5    1.1  1  AAA_13        AAA domain
      0.014   15.5   3.2      0.032   14.3   3.2    1.6  1  zf-ANAPC11    Anaphase-promoting complex subunit 11 RING-H2 f
      0.028   14.7   3.2      0.048   14.0   3.2    1.4  1  zf-RING-like  RING-like domain
      0.056   13.2   2.9       0.14   12.0   2.9    1.6  1  zf-RING_4     RING/Ubox like zinc-binding domain
       0.08   13.1   4.6       0.14   12.3   4.6    1.4  1  zf-C3HC4_4    zinc finger of C3HC4-type, RING
       0.19   11.9   2.7       0.29   11.3   2.7    1.3  1  FGase         N-formylglutamate amidohydrolase
       0.24   11.6   4.3       0.94    9.7   4.3    2.1  1  FANCL_C       FANCL C-terminal domain
       0.55   10.4   2.7       0.85    9.8   1.5    2.0  2  Zf_RING       KIAA1045 RING finger
       0.85    9.8   4.4          3    8.0   4.2    2.0  1  RINGv         RING-variant domain
        1.3    9.2   4.5          6    7.1   4.5    2.0  1  zf-UDP        Zinc-binding RING-finger
        3.4    7.6   5.8         15    5.5   5.9    1.9  2  Prok-RING_4   Prokaryotic RING finger family 4
          8    6.6   6.7         22    5.2   6.7    1.8  1  zf-C3H2C3     Zinc-finger


Domain annotation for each model (and alignments):
>> zf-RING_2  Ring finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.8   4.9   2.9e-14   2.4e-11       2      44 .]      54      96 ..      53      96 .. 0.96

  Alignments for each domain:
  == domain 1  score: 43.8 bits;  conditional E-value: 2.9e-14
   zf-RING_2  2 eCpICleelssadsvlllpCgHvfhreClerwlrssst.CPlCr 44
                +C+ICl+ ++s++ v+l  CgH +h +Cl  wl++ ++ CP+Cr
  KOO24840.1 54 TCAICLDIIESSQGVPLS-CGHRYHATCLIPWLQKGNRsCPTCR 96
                7***************88.*****************99*****9 PP

>> zf-C3HC4_2  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.8   4.3   1.6e-12   1.3e-09       2      40 .]      55      95 ..      54      95 .. 0.94

  Alignments for each domain:
  == domain 1  score: 37.8 bits;  conditional E-value: 1.6e-12
  zf-C3HC4_2  2 CpiCldmlkdpsvvt.pCgHvfCqkCilrsLeekn.eCPlC 40
                C+iCld ++    v   CgH++++ C+ ++L+++n +CP+C
  KOO24840.1 55 CAICLDIIESSQGVPlSCGHRYHATCLIPWLQKGNrSCPTC 95
                *********98777679************************ PP

>> zf-C3HC4  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.6   3.7   1.4e-10   1.1e-07       1      41 []      55      95 ..      55      95 .. 0.97

  Alignments for each domain:
  == domain 1  score: 31.6 bits;  conditional E-value: 1.4e-10
                -TTT-S--SS-E..E-TTS--B-CHHHHHHHHCTSSB--TTT CS
    zf-C3HC4  1 CpiCleeakepn.elleCkHsfCskCirkilksrkkvkCPlC 41
                C+iCl+ ++  +  +l C+H+++ +C+  +l+ +++++CP+C
  KOO24840.1 55 CAICLDIIESSQgVPLSCGHRYHATCLIPWLQ-KGNRSCPTC 95
                *********99989******************.********* PP

>> Zn_ribbon_17  Zinc-ribbon, C4HC2 type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.9   2.2   6.9e-09   5.6e-06       3      47 ..      51      94 ..      49      96 .. 0.94

  Alignments for each domain:
  == domain 1  score: 25.9 bits;  conditional E-value: 6.9e-09
  Zn_ribbon_17  3 llksCayCelavkgrvvlcgvCeHvlHasCarewfenddlaeCps 47
                    ++Ca+C   ++ +  ++ +C+H  Ha C+  w+++++  +Cp+
    KOO24840.1 51 EEETCAICLDIIESSQGVPLSCGHRYHATCLIPWLQKGN-RSCPT 94
                  5689***********************************.99*97 PP

>> zf-RING_11  RING-like zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.2   1.7   6.1e-09     5e-06       2      29 .]      55      81 ..      54      81 .. 0.93

  Alignments for each domain:
  == domain 1  score: 26.2 bits;  conditional E-value: 6.1e-09
  zf-RING_11  2 CsICLeefkpgqalfilpCsHtFHfkCI 29
                C+ICL+ ++ +q +  l+C+H +H  C+
  KOO24840.1 55 CAICLDIIESSQGV-PLSCGHRYHATCL 81
                *************9.559*********5 PP

>> zf-rbx1  RING-H2 zinc finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.5   8.3   6.1e-08   4.9e-05      28      55 .]      68      96 ..      50      96 .. 0.73

  Alignments for each domain:
  == domain 1  score: 23.5 bits;  conditional E-value: 6.1e-08
     zf-rbx1 28 vlGeCgHaFHlhCiskWlkt.rkvCPlcr 55
                v  +CgH +H  C+  Wl++ +++CP+cr
  KOO24840.1 68 VPLSCGHRYHATCLIPWLQKgNRSCPTCR 96
                3337****************9999****8 PP

>> zf-C3HC4_3  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.7   3.2   3.8e-08   3.1e-05       2      46 ..      52      98 ..      51     101 .. 0.90

  Alignments for each domain:
  == domain 1  score: 23.7 bits;  conditional E-value: 3.8e-08
                GSB-TTTSS..SBS-EEETTEEEEEE-HHHHHHHHH.TT-B-TTT--B CS
  zf-C3HC4_3  2 deeCviCle..rprnvvllpCgHlvlCeeCaekllk.rkkkCpiCrrp 46
                +e+C iCl+  + ++ v l CgH  +  +C+  +l+  +++Cp Cr +
  KOO24840.1 52 EETCAICLDiiESSQGVPLSCGHR-YHATCLIPWLQkGNRSCPTCRNK 98
                789******7778889********.99*****99988*********86 PP

>> zf-RING_5  zinc-RING finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.5   3.2     2e-07   0.00017       2      44 .]      55      97 ..      54      97 .. 0.95

  Alignments for each domain:
  == domain 1  score: 21.5 bits;  conditional E-value: 2e-07
   zf-RING_5  2 CnkCfeklskeekfyltsCgHifCekClkkll.ekeavCpiCrk 44
                C +C + + ++++ + +sCgH ++ +Cl   l + ++ Cp+Cr+
  KOO24840.1 55 CAICLDII-ESSQGVPLSCGHRYHATCLIPWLqKGNRSCPTCRN 97
                ********.9********************9999********95 PP

>> zf-RING_UBOX  RING-type zinc-finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.8   5.8   1.5e-06    0.0012       1      39 []      55      93 ..      55      95 .. 0.84

  Alignments for each domain:
  == domain 1  score: 18.8 bits;  conditional E-value: 1.5e-06
  zf-RING_UBOX  1 CpIClelft....dPlvlpCGHtFCreClwelskslegafkCP 39
                  C ICl+  +     P + +CGH ++  Cl  +   ++g+++CP
    KOO24840.1 55 CAICLDIIEssqgVP-L-SCGHRYHATCL--IPWLQKGNRSCP 93
                  ******999988888.5.8**********..555777777777 PP

>> DUF2586  Protein of unknown function (DUF2586)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.9   1.2e-05    0.0094      68     184 ..     143     265 ..     126     271 .. 0.81

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 1.2e-05
     DUF2586  68 gqnwsaavlvlaegd.awaeavdaAqetasveavvltepvatkaeiealqakaeellak...y..grrvfflaavagidaetesWseyvealtalqkgv 160
                 +q w a v +l+e++   ++av++A++ +    v   e   ++  +++ q  +++l ++   y  + +++ +a  ++   e + W+ey ++l++l+   
  KOO24840.1 143 NQTWDAWVETLRESEsLKRKAVSKAKALVVRKRVDAGERREAQRLVRQHQGWKSKLQKRkkdYdeSEKQLRIAERQARRDERKVWDEYYDELAKLTGKR 241
                 7999999*99998884567899999999988888888888888889998888888776422242245667777777777799***************** PP

     DUF2586 161 aadqvalvpqlfgndvGvlaGRLc 184
                 +++ v+ v++l g +  vl+ R +
  KOO24840.1 242 TSKLVQAVANLSGFQRSVLTTRKA 265
                 ***************999998865 PP

>> AAA_13  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   2.5   2.1e-05     0.017     305     471 ..     118     285 ..     102     288 .. 0.82

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 2.1e-05
      AAA_13 305 klkavsdeasensafeedkeelkaea.ealeeqLkglqraleaKrkepfksvelesvkakiesikklvaeineliakhNekvanleeeke...eakkkl 399
                  ++++ +  +e+ ++  ++++l++e  ++ +++ ++l++  + Krk ++k ++  +v ++++    +  e+++l+++h    ++l+++k+   e +k+l
  KOO24840.1 118 GYESGYTN-DEDDESGTAHQQLHDEWnQTWDAWVETLRESESLKRKAVSK-AKALVVRKRVD--AGERREAQRLVRQHQGWKSKLQKRKKdydESEKQL 212
                 55555554.45677888999999999567789999999999999998888.88889999999..5667899999***9998888888887222556677 PP

      AAA_13 400 elhlveeleseldeykkkykklekaieklekelkeeeaelkkleeeikeLekqlrdekpaaeeinkeLkaf.G 471
                 +  + +  ++e +  ++ y++l+k   k + +l ++ a+l   +  +   +k + + ++ +  +++eL+++ G
  KOO24840.1 213 RIAERQARRDERKVWDEYYDELAKLTGKRTSKLVQAVANLSGFQRSVLTTRKATDQAQRKVRRVESELARMvG 285
                 77777777777777779999999999*******************************************9988 PP

>> zf-ANAPC11  Anaphase-promoting complex subunit 11 RING-H2 finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   3.2     4e-05     0.032      47      79 ..      67      97 ..      48     100 .. 0.77

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 4e-05
                EEEBTTS-EEEHHHHHHHHHHHSTSSB-TTTSS CS
  zf-ANAPC11 47 lvlGkckhnfhlhcilkwletetskglcpmcrq 79
                 v  +c h +h+ c++ wl++   +  cp cr+
  KOO24840.1 67 GVPLSCGHRYHATCLIPWLQK--GNRSCPTCRN 97
                55568**************86..5678****97 PP

>> zf-RING-like  RING-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   3.2   5.9e-05     0.048       1      43 []      55      95 ..      55      95 .. 0.92

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 5.9e-05
  zf-RING-like  1 CeaCkeivtqGvrCsnesCnvrlHvdCfqhyirthsskkCpkC 43
                  C++C +i+   +  +  sC  r+H  C+   + ++ +++Cp+C
    KOO24840.1 55 CAICLDIIESSQGVP-LSCGHRYHATCLIPWL-QKGNRSCPTC 95
                  999999998888888.89************99.9999****** PP

>> zf-RING_4  RING/Ubox like zinc-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   2.9   0.00017      0.14      13      45 ..      65      97 ..      53      98 .. 0.78

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 0.00017
   zf-RING_4 13 kdlkpCeCgyqiClfCyhrileeeegrCPaCre 45
                ++  p +Cg++    C+   l++ +  CP Cr+
  KOO24840.1 65 SQGVPLSCGHRYHATCLIPWLQKGNRSCPTCRN 97
                3457889*************************7 PP

>> zf-C3HC4_4  zinc finger of C3HC4-type, RING
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   4.6   0.00017      0.14       1      42 []      55      95 ..      55      95 .. 0.88

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 0.00017
  zf-C3HC4_4  1 CPiCldYLe..kPvsleCGhsfClsCisslqkepdgeqllCplC 42
                C iCld +e  + v l+CGh +  +C+  + ++ +    +Cp C
  KOO24840.1 55 CAICLDIIEssQGVPLSCGHRYHATCLIPWLQKGNR---SCPTC 95
                99******8335799*************99999866...6**99 PP

>> FGase  N-formylglutamate amidohydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   2.7   0.00036      0.29      23     127 ..     136     246 ..     123     277 .. 0.75

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00036
                 -HHHHTSTTTS-TTHHHHHH.......HHHHEEESS-TTT--TTS-T.TSTTSS-SEETTEE-GGG.............T--HHHHHHHHHH..THHHH CS
       FGase  23 aldeaellraeDigvdelyrfa.....gaaalqarfsRlviDlNRapddldealpeasglgliprntfdgepiyrr...pldaaeveerier..yyrpY 111
                 ++ ++e  + +D++v+ l +++      +++ +a + R  +D      +++  +  + + +  + + +++++ y++   +l  ae+++r+++  +++ Y
  KOO24840.1 136 QQLHDEWNQTWDAWVETLRESEslkrkAVSKAKALVVRKRVDAGERR-EAQRLV--R-QHQGWKSKLQKRKKDYDEsekQLRIAERQARRDErkVWDEY 230
                 55566777899999999999666776666669999999999985443.344443..2.223344444567788888888888888888887666***** PP

                 HHHHHHHHHHHH.HT- CS
       FGase 112 haalaellarlrarhg 127
                 +++la+l  ++ ++  
  KOO24840.1 231 YDELAKLTGKRTSKLV 246
                 ******9988776644 PP

>> FANCL_C  FANCL C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   4.3    0.0012      0.94       4      45 ..      54      89 ..      51      98 .. 0.76

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 0.0012
                S-SSS--SS-TT-----B--S-TT----B-SGGGHHHHHHHH CS
     FANCL_C  4 eCgiCyayrldsgevpdisCdnekCnkkfHsaCLkeWlrslk 45
                 C iC+    +s+ vp       +C++++H++CL  Wl++ +
  KOO24840.1 54 TCAICLDIIESSQGVP------LSCGHRYHATCLIPWLQKGN 89
                6777776666566666......47**************9754 PP

>> Zf_RING  KIAA1045 RING finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   1.5     0.001      0.85       2      35 ..      49      82 ..      48      98 .. 0.83
   2 ?   -2.8   0.0       8.9   7.2e+03      46      59 ..     274     287 ..     262     289 .. 0.63

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.001
     Zf_RING  2 veedelCeiC.evytaeelypCRvCtkvfHegClr 35
                +ee+e+C iC ++ ++++ +p   C + +H +Cl 
  KOO24840.1 49 PEEEETCAIClDIIESSQGVPL-SCGHRYHATCLI 82
                789*******888888888886.69********96 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 8.9
     Zf_RING  46 lellkrAktetGWs 59 
                   +  +    +GWs
  KOO24840.1 274 RRVESELARMVGWS 287
                 44555556778998 PP

>> RINGv  RING-variant domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.0   4.2    0.0037         3       1      48 []      55      95 ..      55      95 .. 0.75

  Alignments for each domain:
  == domain 1  score: 8.0 bits;  conditional E-value: 0.0037
                ETTTTEE-SSSS--B-SS--STCCCSB-HHHHHHHHHHTCT-SB-TTT CS
       RINGv  1 CriCleeeeeseplispCkCrGslklvHesClekWldekeantqCeiC 48
                C iCl+  e+s+    p +C    +  H +Cl  Wl++   n++C  C
  KOO24840.1 55 CAICLDIIESSQG--VPLSCG---HRYHATCLIPWLQK--GNRSCPTC 95
                7777777777663..344442...467**********9..999**999 PP

>> zf-UDP  Zinc-binding RING-finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.1   4.5    0.0073         6       3      77 ..      47     112 ..      45     113 .. 0.75

  Alignments for each domain:
  == domain 1  score: 7.1 bits;  conditional E-value: 0.0073
      zf-UDP   3 lkdlngqiCqiCgddvgltedgelFvacnecafpvcrpcyeyerkdgnqsCPqCktrykrlkgsprvegdeeedd 77 
                 ++  +++ C iC d ++ ++          c+     +c+    + gn+sCP C+ +  r     r+  d++edd
  KOO24840.1  47 VQPEEEETCAICLDIIESSQGVP-----LSCGHRYHATCLIPWLQKGNRSCPTCRNKPPR----ERLGDDDSEDD 112
                 55667788999999888765432.....467888888888888899*********99988....56666666666 PP

>> Prok-RING_4  Prokaryotic RING finger family 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.1   0.1         1   8.5e+02      28      41 ..      50      63 ..      47      68 .. 0.69
   2 ?    5.5   5.9     0.018        15      13      39 ..      69      98 ..      55     103 .. 0.67

  Alignments for each domain:
  == domain 1  score: -0.1 bits;  conditional E-value: 1
  Prok-RING_4 28 kdlssCPlCqrris 41
                 ++ ++C +C   i+
   KOO24840.1 50 EEEETCAICLDIIE 63
                 55668888887765 PP

  == domain 2  score: 5.5 bits;  conditional E-value: 0.018
  Prok-RING_4 13 lepCgHlvCkeCfdsk..dls..sCPlCqrr 39
                   +CgH    +C+  +  +    sCP C+++
   KOO24840.1 69 PLSCGHRYHATCLIPWlqK-GnrSCPTCRNK 98
                 459**99888888777432.146*****986 PP

>> zf-C3H2C3  Zinc-finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.2   6.7     0.027        22      14      34 ..      69      95 ..      53      96 .. 0.70

  Alignments for each domain:
  == domain 1  score: 5.2 bits;  conditional E-value: 0.027
   zf-C3H2C3 14 aysCkHlvHakC.a.....deevCPkC 34
                  sC H +Ha C        +  CP+C
  KOO24840.1 69 PLSCGHRYHATClIpwlqkGNRSCPTC 95
                569*********432332224679999 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (315 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1823  (0.101679); expected 358.6 (0.02)
Passed bias filter:                      694  (0.0387082); expected 358.6 (0.02)
Passed Vit filter:                        88  (0.00490825); expected 17.9 (0.001)
Passed Fwd filter:                        24  (0.00133861); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              22  [number of targets reported over threshold]
# CPU time: 0.54u 0.28s 00:00:00.82 Elapsed: 00:00:00.45
# Mc/sec: 2107.03
//
Query:       KOO24841.1  [L=2513]
Description: hypothetical protein Ctob_008804 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.4e-05   25.3  22.7      0.044   13.9   3.8    6.9  7  p25-alpha  p25-alpha
     0.0078   16.0   9.6       0.63    9.9   0.1    6.5  7  EF-hand_8  EF-hand domain pair
  ------ inclusion threshold ------
       0.26   11.4   9.7        4.4    7.5   0.2    4.8  6  CH_2       CH-like domain in sperm protein
        9.5    6.1   5.7        4.4    7.2   0.3    2.8  3  MCR_D      Methyl-coenzyme M reductase operon protein D


Domain annotation for each model (and alignments):
>> p25-alpha  p25-alpha
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.9   3.8   9.9e-06     0.044       3     109 ..     283     392 ..     281     398 .. 0.77
   2 ?    3.8   0.0     0.013        57      56      85 ..     603     631 ..     597     651 .. 0.79
   3 !    8.8   0.9   0.00039       1.7       3      62 ..     720     781 ..     718     823 .. 0.84
   4 ?    1.9   0.1      0.05   2.2e+02      56      89 ..    1016    1049 ..    1007    1063 .. 0.80
   5 ?    3.6   0.2     0.015        68       4      57 ..    1133    1189 ..    1131    1205 .. 0.85
   6 ?   -1.8   0.0      0.68     3e+03      57      83 ..    1426    1452 ..    1418    1461 .. 0.84
   7 ?   -1.9   0.0      0.76   3.4e+03      55      78 ..    1820    1843 ..    1814    1858 .. 0.77

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 9.9e-06
   p25-alpha   3 aFkaFakfg...dtkktgkemdnknfsKlckDckiidkkvtstdvDiiFsKvkaksarkitfeqfkealeelaekkfkkkkkeeel.eliekliegkg. 96 
                 +F++++k     d+++++ +m+ ++f  ++kD+ + +k v  t+   iF+K +a+     t e f++ ++e  ++++  +++++e+ e+ ++l++g++ 
  KOO24841.1 283 IFTKYCKGIsgvDSATDALQMELEEFHDFVKDARLETKFVSFTQFSSIFQKANASR----TAEAFEHHVRETRNSQVVMEQEQQEKkEECKRLAKGRQd 377
                 7999999766678999999****************99**************99554....678999999999888776555555554888888888862 PP

   p25-alpha  97 ..Pklqgvtkatkag 109
                       g+ k+ k++
  KOO24841.1 378 rrEGNVGTRKIIKKD 392
                 213333566665555 PP

  == domain 2  score: 3.8 bits;  conditional E-value: 0.013
   p25-alpha  56 arkitfeqfkealeelaekkfkkkkkeeel 85 
                   +i+f++f+e+l  la +k+ +++++e++
  KOO24841.1 603 MATIDFTEFQECLCRLARDKY-GEMPKEHM 631
                 479****************99.55555554 PP

  == domain 3  score: 8.8 bits;  conditional E-value: 0.00039
   p25-alpha   3 aFkaFakfg..dtkktgkemdnknfsKlckDckiidkkvtstdvDiiFsKvkaksarkitfe 62 
                 +F ++ak    +t +++ e++  +f++l+kD+++ ++ ++ +++ +iF+K ++  + k+  +
  KOO24841.1 720 IFAHYAKSVsdTTVEDTMEITMTEFKRLVKDVGLETRDFKWERMQTIFKKANSLHNDKVHAQ 781
                 6888988875355668999***************99**************998888777655 PP

  == domain 4  score: 1.9 bits;  conditional E-value: 0.05
   p25-alpha   56 arkitfeqfkealeelaekkfkkkkkeeelelie 89  
                    +++fe+fke++  + ++kfk   k+++ + + 
  KOO24841.1 1016 MATLDFEEFKECVARCGAEKFKLVTKMSDAQRVA 1049
                  5789***************9*9877777765554 PP

  == domain 5  score: 3.6 bits;  conditional E-value: 0.015
   p25-alpha    4 FkaFakfg...dtkktgkemdnknfsKlckDckiidkkvtstdvDiiFsKvkaksar 57  
                  F a+++     ++++++ em+ ++f+ ++ +ck+ +k v+   +  +F Kv+a ++ 
  KOO24841.1 1133 FLAYCRSVlgsSSAADAIEMEMAEFKDFVDECKLETKFVNFDLMTNMFIKVNAVNSA 1189
                  778887765556677899****************99**************9987665 PP

  == domain 6  score: -1.8 bits;  conditional E-value: 0.68
   p25-alpha   57 rkitfeqfkealeelaekkfkkkkkee 83  
                   +++f++f e+l  +  +k++k ++e 
  KOO24841.1 1426 ETLSFDEFVECLCRMGVDKYHKHVPEV 1452
                  6899**************9*9988765 PP

  == domain 7  score: -1.9 bits;  conditional E-value: 0.76
   p25-alpha   55 sarkitfeqfkealeelaekkfkk 78  
                   +  +++++f+e+l  +a +k++ 
  KOO24841.1 1820 AQAVLDLDEFQECLARVAMSKYSA 1843
                  5567899************98854 PP

>> EF-hand_8  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.0       0.5   2.2e+03       5      15 ..     606     617 ..     604     627 .. 0.82
   2 !    9.9   0.1   0.00014      0.63       2      35 ..     736     770 ..     735     779 .. 0.90
   3 ?    0.2   0.1      0.15   6.8e+02      42      54 ..    1018    1030 ..    1011    1034 .. 0.79
   4 ?   -1.0   0.1      0.36   1.6e+03      42      52 ..    1427    1437 ..    1426    1442 .. 0.78
   5 !    4.0   0.1    0.0099        44       3      34 ..    1558    1587 ..    1556    1588 .. 0.88
   6 ?   -0.9   0.0      0.34   1.5e+03       3      20 ..    1822    1839 ..    1820    1849 .. 0.72
   7 ?   -1.9   0.0       0.7   3.1e+03       5      20 ..    1961    1976 ..    1960    1987 .. 0.80

  Alignments for each domain:
  == domain 1  score: -1.4 bits;  conditional E-value: 0.5
   EF-hand_8   5 Itreelrril.r 15 
                 I+++e++++l r
  KOO24841.1 606 IDFTEFQECLcR 617
                 999999999866 PP

  == domain 2  score: 9.9 bits;  conditional E-value: 0.00014
   EF-hand_8   2 kgkItreelrrilrilglkk.glseeevdilfref 35 
                 +++It++e++r ++ +gl+  ++  e ++++f+++
  KOO24841.1 736 TMEITMTEFKRLVKDVGLETrDFKWERMQTIFKKA 770
                 89*********99999***************9986 PP

  == domain 3  score: 0.2 bits;  conditional E-value: 0.15
   EF-hand_8   42 kisfeEFcvller 54  
                  +++feEF ++++r
  KOO24841.1 1018 TLDFEEFKECVAR 1030
                  6899999999887 PP

  == domain 4  score: -1.0 bits;  conditional E-value: 0.36
   EF-hand_8   42 kisfeEFcvll 52  
                  ++sf+EF+++l
  KOO24841.1 1427 TLSFDEFVECL 1437
                  57888888876 PP

  == domain 5  score: 4.0 bits;  conditional E-value: 0.0099
   EF-hand_8    3 gkItreelrrilrilglkkglseeevdilfre 34  
                  ++++++e+++++  +gl+  +  +++d++ + 
  KOO24841.1 1558 MEMSMDEFHDFVVDIGLE--TKQYKFDVMCNQ 1587
                  899*********888***..*******99665 PP

  == domain 6  score: -0.9 bits;  conditional E-value: 0.34
   EF-hand_8    3 gkItreelrrilrilglk 20  
                   +++ +e++++l+ + + 
  KOO24841.1 1822 AVLDLDEFQECLARVAMS 1839
                  578999****99655544 PP

  == domain 7  score: -1.9 bits;  conditional E-value: 0.7
   EF-hand_8    5 Itreelrrilrilglk 20  
                  ++ ee+++ +r +gl+
  KOO24841.1 1961 MSLEEFKDLARDVGLE 1976
                  6789999988999987 PP

>> CH_2  CH-like domain in sperm protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.5   0.2   0.00098       4.4      35      85 ..     302     352 ..     298     359 .. 0.89
   2 ?   -2.1   0.1      0.96   4.3e+03      40      68 ..     743     771 ..     708     784 .. 0.64
   3 ?    2.6   0.0     0.032   1.4e+02      19      66 ..    1040    1087 ..    1032    1099 .. 0.85
   4 ?    3.6   0.0     0.016        72      36      75 ..    1152    1191 ..    1147    1204 .. 0.78
   5 ?   -3.6   0.0       2.9   1.3e+04      39      69 ..    1563    1594 ..    1559    1607 .. 0.72
   6 ?   -3.6   0.0       2.8   1.3e+04      37      74 ..    2315    2352 ..    2314    2355 .. 0.85

  Alignments for each domain:
  == domain 1  score: 7.5 bits;  conditional E-value: 0.00098
        CH_2  35 ypklvdlhnysngsslaaklnNWetLekvlkklgiklskelieevasekpg 85 
                 + +l ++h + +   l++k   +++++ +++k + + ++e++e+ ++e+++
  KOO24841.1 302 QMELEEFHDFVKDARLETKFVSFTQFSSIFQKANASRTAEAFEHHVRETRN 352
                 567889******************************999999998887765 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 0.96
        CH_2  40 dlhnysngsslaaklnNWetLekvlkklg 68 
                 ++++  +   l+++   We+++ ++kk +
  KOO24841.1 743 EFKRLVKDVGLETRDFKWERMQTIFKKAN 771
                 34444445555666666777777777655 PP

  == domain 3  score: 2.6 bits;  conditional E-value: 0.032
        CH_2   19 rdfsdGvlvAeilkkyypklvdlhnysngsslaaklnNWetLekvlkk 66  
                   ++sd+  vA  +k++  ++   ++  +++ ++a ++NW++L++ lk 
  KOO24841.1 1040 TKMSDAQRVAAFCKNLLGEENTEESMWSATLIKAERYNWKLLSQPLKG 1087
                  679999999******999999999999***************887765 PP

  == domain 4  score: 3.6 bits;  conditional E-value: 0.016
        CH_2   36 pklvdlhnysngsslaaklnNWetLekvlkklgiklskel 75  
                   ++ +++ + ++++l++k  N+++++ ++ k++   s+++
  KOO24841.1 1152 MEMAEFKDFVDECKLETKFVNFDLMTNMFIKVNAVNSAQV 1191
                  5778999*******************99988886555444 PP

  == domain 5  score: -3.6 bits;  conditional E-value: 2.9
        CH_2   39 vdlhnysngsslaaklnNWetL.ekvlkklgi 69  
                   ++h +     l++k++ ++++ ++++k    
  KOO24841.1 1563 DEFHDFVVDIGLETKQYKFDVMcNQFIKANAT 1594
                  57899999999999999999995555544433 PP

  == domain 6  score: -3.6 bits;  conditional E-value: 2.8
        CH_2   37 klvdlhnysngsslaaklnNWetLekvlkklgiklske 74  
                  ++v++h +  ++ l + ++ ++t++  ++k +   +++
  KOO24841.1 2315 EMVEFHDFVIETDLITDQYGFDTMKGQFHKANAGSDDN 2352
                  6799********************99999988776665 PP

>> MCR_D  Methyl-coenzyme M reductase operon protein D
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.2   0.1      0.13     6e+02      90     130 ..     976    1015 ..     965    1023 .. 0.81
   2 ?   -2.4   0.1      0.86   3.8e+03      78     124 ..    1150    1196 ..    1149    1209 .. 0.81
   3 ?    7.2   0.3   0.00098       4.4      78     142 ..    1558    1624 ..    1555    1625 .. 0.90

  Alignments for each domain:
  == domain 1  score: 0.2 bits;  conditional E-value: 0.13
       MCR_D   90 eeiceevlpfsyeikegkfirkkktvsDyakyGeeeadkrl 130 
                  +e c++ ++ ++++ + kf   ++ + D++  G++ +d+  
  KOO24841.1  976 DERCRDKFKATFSMPQAKFAFINSQTLDQMSIGQQ-TDTDS 1015
                  56799**************99999999*******9.55544 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 0.86
       MCR_D   78 leledeeviekieeiceevlpfsyeikegkfirkkktvsDyakyGee 124 
                  +e+e++e+++ ++e   e+  +++++ ++ fi+ ++  s +++ +++
  KOO24841.1 1150 IEMEMAEFKDFVDECKLETKFVNFDLMTNMFIKVNAVNSAQVRDAHH 1196
                  7888999999999988888889***********99888888877666 PP

  == domain 3  score: 7.2 bits;  conditional E-value: 0.00098
       MCR_D   78 leledeeviekieeiceevlpfsyeikegkfirkkktvsDyakyGee..eadkrllGlvDpksklee 142 
                  +e++++e+ + + +i  e+ ++++++  ++fi+ ++t + +++  ++  + d +  G  Dp+ k++e
  KOO24841.1 1558 MEMSMDEFHDFVVDIGLETKQYKFDVMCNQFIKANATNTAQVRAQRQdeKRDAQSRGNDDPNWKKKE 1624
                  688888899999999999999********************9998877899**********999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (2513 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       862  (0.0480785); expected 358.6 (0.02)
Passed bias filter:                      528  (0.0294495); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 1.27u 0.32s 00:00:01.59 Elapsed: 00:00:00.51
# Mc/sec: 14808.18
//
Query:       KOO24842.1  [L=482]
Description: ATPase family aaa domain-containing protein 2b-like protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    9.2e-39  132.9   0.0    1.4e-38  132.3   0.0    1.3  1  AAA              ATPase family associated with various cellul
    3.1e-13   49.3   0.4    7.6e-13   48.0   0.4    1.6  1  AAA_lid_3        AAA+ lid domain
    6.7e-06   26.6   0.6    6.1e-05   23.5   0.5    2.3  1  AAA_16           AAA ATPase domain
    2.4e-05   24.0   0.1    7.8e-05   22.4   0.1    2.0  1  Shugoshin_C      Shugoshin C terminus
    7.6e-05   22.5   0.0    0.00013   21.7   0.0    1.3  1  IstB_IS21        IstB-like ATP binding protein
    8.6e-05   22.7   0.0    0.00019   21.6   0.0    1.5  1  AAA_2            AAA domain (Cdc48 subfamily)
     0.0012   19.1   0.3      0.029   14.6   0.3    2.4  1  AAA_22           AAA domain
     0.0026   17.5   0.0      0.006   16.3   0.0    1.6  1  AAA_30           AAA domain
      0.004   17.1   0.0      0.015   15.3   0.0    2.1  1  AAA_5            AAA domain (dynein-related subfamily)
     0.0071   16.5   0.0      0.013   15.6   0.0    1.6  1  AAA_33           AAA domain
  ------ inclusion threshold ------
      0.016   15.7   0.0      0.034   14.7   0.0    1.6  1  AAA_18           AAA domain
      0.019   14.7   0.1       0.11   12.3   0.1    2.0  1  RuvB_N           Holliday junction DNA helicase RuvB P-loop d
      0.026   14.7   0.0      0.051   13.7   0.0    1.4  1  Sigma54_activ_2  Sigma-54 interaction domain
      0.026   14.7   0.0      0.061   13.6   0.0    1.6  1  AAA_28           AAA domain
      0.027   13.9   0.1      0.048   13.0   0.1    1.3  1  Mg_chelatase     Magnesium chelatase, subunit ChlI
      0.027   13.7   0.0      0.043   13.0   0.0    1.2  1  TIP49            TIP49 P-loop domain
      0.034   13.7   0.0      0.071   12.7   0.0    1.6  1  AAA_25           AAA domain
      0.039   13.2   0.0      0.059   12.6   0.0    1.2  1  DUF2075          Uncharacterized conserved protein (DUF2075)
      0.049   13.4   0.0      0.089   12.6   0.0    1.3  1  AAA_11           AAA domain
      0.055   13.5   0.0      0.085   12.9   0.0    1.2  1  ResIII           Type III restriction enzyme, res subunit
      0.093   13.1   0.0       0.16   12.4   0.0    1.3  1  RNA_helicase     RNA helicase
       0.11   12.2   0.0       0.26   11.0   0.0    1.5  1  Sigma54_activat  Sigma-54 interaction domain
       0.16   11.5   0.0       0.26   10.8   0.0    1.2  1  AAA_7            P-loop containing dynein motor region
       0.18   10.9   0.0       0.29   10.2   0.0    1.2  1  Parvo_NS1        Parvovirus non-structural protein NS1


Domain annotation for each model (and alignments):
>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  132.3   0.0   1.9e-41   1.4e-38       1     131 [.     225     359 ..     225     360 .. 0.95

  Alignments for each domain:
  == domain 1  score: 132.3 bits;  conditional E-value: 1.9e-41
                 EEEESSTTSSHHHHHHHHHHHHT.....HEEEEEETTTCSSSSTTHHHHHHHHHHHHHHHTSTSEEEEEETGGGHHHHHTTCCCHHHHHHHHHHHHHHH CS
         AAA   1 vllyGppGtGKTllakavakelg.....vefleisgsellskyvgesekkirelfkeakekakpsilfiDEidalaksrsgseseeeervvnqLlteld 94 
                 vl++GppGtGKTl+a+a+a++++     v f+  +g+++lsk+vge+ek++r lf+ea + + p i+f+DE+d la+ rs++++  + ++v++Ll+ +d
  KOO24842.1 225 VLFHGPPGTGKTLVARALASTCSsagrpVAFFMRKGADVLSKWVGEAEKQLRLLFEEATRLQ-PAIIFFDELDGLAPVRSSKQDYIHASIVSTLLALMD 322
                 79*******************965556688*******************************8.************************************ PP

                 HTTTSSSTEEEEEEESSGGGSTHHHHS.TTSSEEEETT CS
         AAA  95 gvkkkeskvivigatnrpdkldpallr.gRfdrkieie 131
                 g++++ ++v++igatnr+d ld+al+r gRfdr+++++
  KOO24842.1 323 GLDSR-GQVLLIGATNRIDALDSALRRpGRFDRELQFS 359
                 ****7.66**************************9986 PP

>> AAA_lid_3  AAA+ lid domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.0   0.4     1e-15   7.6e-13       3      38 ..     385     420 ..     384     426 .. 0.91

  Alignments for each domain:
  == domain 1  score: 48.0 bits;  conditional E-value: 1e-15
   AAA_lid_3   3 dlkeLAerTeGySGADlaalcreAallAlrrgikei 38 
                 +l++LA+rT+G++GADl+alc eAal+Alr  ++ei
  KOO24842.1 385 QLDALARRTHGFCGADLKALCAEAALRALRGAFPEI 420
                 699***************************988874 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.5   0.5   8.2e-08   6.1e-05      24     134 ..     222     328 ..     213     340 .. 0.61

  Alignments for each domain:
  == domain 1  score: 23.5 bits;  conditional E-value: 8.2e-08
      AAA_16  24 pelvllsGesGvGKsslvrellralekd...ggiflrgkcdqlesaipysalaqalareellrqlldeaesaeleawrekleealaavpelagaea... 116
                 p+ vl++G++G+GK+ ++r+l+   + +    ++f+r  +d l      s ++  + + + lr l +ea+  +++      ++ la   ++++++    
  KOO24842.1 222 PRGVLFHGPPGTGKTLVARALASTCSSAgrpVAFFMRKGADVL------SKWVGEA-E-KQLRLLFEEATRLQPAIIFFDELDGLA---PVRSSKQdyi 309
                 499*******************855555432566688888888......7777777.3.455556555333333333332233233...2222222333 PP

      AAA_16 117 .srllellkrllallsrde 134
                   ++  +l +l++ l +++
  KOO24842.1 310 hASIVSTLLALMDGLDSRG 328
                 4666666666665555544 PP

>> Shugoshin_C  Shugoshin C terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.4   0.1     1e-07   7.8e-05       1      19 [.       4      22 ..       4      23 .. 0.94

  Alignments for each domain:
  == domain 1  score: 22.4 bits;  conditional E-value: 1e-07
  Shugoshin_C  1 gRpsRrarkvvsYKEPSLn 19
                 gR++ r++++vsYKEP+L+
   KOO24842.1  4 GRRQTRRKSAVSYKEPNLH 22
                 89****************8 PP

>> IstB_IS21  IstB-like ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.7   0.0   1.8e-07   0.00013      49     130 ..     224     309 ..     218     317 .. 0.83

  Alignments for each domain:
  == domain 1  score: 21.7 bits;  conditional E-value: 1.8e-07
   IstB_IS21  49 nivllGpsGvGKshlaialgveavraglsvlfvr...vedLveelkrarrdgklaralkrllkvdllilDdl.gllpldqaeaell 130
                 ++++ Gp+G+GK+ +a al+     ag  v f+    ++ L + +  a+++ +l  + ++ l+++++  D+l gl p+ + ++ ++
  KOO24842.1 224 GVLFHGPPGTGKTLVARALASTCSSAGRPVAFFMrkgADVLSKWVGEAEKQLRLLFEEATRLQPAIIFFDELdGLAPVRSSKQDYI 309
                 68999*************************99852324557778999999999999999999999999999877888877766665 PP

>> AAA_2  AAA domain (Cdc48 subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.6   0.0   2.5e-07   0.00019       6     105 ..     225     323 ..     221     327 .. 0.78

  Alignments for each domain:
  == domain 1  score: 21.6 bits;  conditional E-value: 2.5e-07
                 EEEE--TTSSHHHHHHHHHHHTT-....-EEEEEGGG-------THHHHHHHHHTTT-..HHHHTTS.....EEEEETGGG-------------HHHHH CS
       AAA_2   6 illlgptgvGktelakalaellfvkkekkliradaselleeeevehlvsrligappgy..vgaeegG.....ivllDEidKihpkessgadvSregVqr 97 
                 +l+ gp g+Gkt++a+ala++ + +  ++++ + +++ +       ++s+ +g+++      +ee       i+++DE+d  +p +ss++d  +  ++ 
  KOO24842.1 225 VLFHGPPGTGKTLVARALASTCS-SAGRPVAFF-MRKGAD------VLSKWVGEAEKQlrLLFEEATrlqpaIIFFDELDGLAPVRSSKQDYIHASIVS 315
                 689*******************9.666666554.555555......45555444443300345666666888*************************** PP

                 HHHHHHH- CS
       AAA_2  98 dLLqileg 105
                  LL +++g
  KOO24842.1 316 TLLALMDG 323
                 ******98 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.6   0.3   3.9e-05     0.029       9      29 ..     226     246 ..     221     342 .. 0.75

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 3.9e-05
      AAA_22   9 vvtGesGtGKTtllrrlleql 29 
                 + +G++GtGKT+++r l+++ 
  KOO24842.1 226 LFHGPPGTGKTLVARALASTC 246
                 689**************9885 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.0   8.1e-06     0.006      19      64 ..     223     266 ..     212     303 .. 0.77

  Alignments for each domain:
  == domain 1  score: 16.3 bits;  conditional E-value: 8.1e-06
      AAA_30  19 rvavltGpAGtGKttalkalreaweaaggrviglAptgkaAkvLae 64 
                 r ++ +Gp+GtGKt + +al+ +  +ag++v+ +  +   A+vL++
  KOO24842.1 223 RGVLFHGPPGTGKTLVARALASTCSSAGRPVAFFMRK--GADVLSK 266
                 557889**********************999887543..4555555 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.0     2e-05     0.015       2      75 ..     225     296 ..     224     348 .. 0.72

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 2e-05
                 EEEE--SSSSHHHHHHHGGGGB...S--EEEEE--TT--HHHHH--B--.........--------..G-SEEEEESGG CS
       AAA_5   2 vlLvGppGtgKselaerlaaal...nreveyvqltrdtteedlkgrreikngttslvdsplvraar..egeilvlDEve 75 
                 vl  GppGtgK+ +a+ la+     +r+v   +     + +d++ ++    g+++ +   l ++a+  +++i+++DE++
  KOO24842.1 225 VLFHGPPGTGKTLVARALASTCssaGRPVAFFMR----KGADVLSKWV---GEAEKQLRLLFEEATrlQPAIIFFDELD 296
                 8999***************998654444433332....2356666666...5666666666666666666677766666 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.0   1.8e-05     0.013       2      22 ..     225     245 ..     225     352 .. 0.84

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 1.8e-05
      AAA_33   2 vllvGlpGsGKstlaerllkk 22 
                 vl++G+pG+GK+ +a+ l+  
  KOO24842.1 225 VLFHGPPGTGKTLVARALAST 245
                 79***************9843 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.7   0.0   4.5e-05     0.034       1      34 [.     225     259 ..     225     297 .. 0.77

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 4.5e-05
      AAA_18   1 IlltGtpGvGKttlakeLskrlgf.gvnlrdvake 34 
                 +l  G+pG+GKt +a++L++ + + g+ + +  ++
  KOO24842.1 225 VLFHGPPGTGKTLVARALASTCSSaGRPVAFFMRK 259
                 5778**************99984455555555444 PP

>> RuvB_N  Holliday junction DNA helicase RuvB P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.1   0.00014      0.11      36      98 ..     225     287 ..     219     357 .. 0.70

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 0.00014
      RuvB_N  36 vllyGpPGlGkttlakiiakelgvklkitsgPvlekagd.laalltnleekdvlfideihrlsr 98 
                 vl++GpPG Gkt +a+ +a+   +  +  +   + k +d l+  + + e++  l+ +e  rl++
  KOO24842.1 225 VLFHGPPGTGKTLVARALASTCSSAGRPVAF-FMRKGADvLSKWVGEAEKQLRLLFEEATRLQP 287
                 9**************9999987766655443.34444441333444444444455566666665 PP

>> Sigma54_activ_2  Sigma-54 interaction domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.0   6.8e-05     0.051      24      83 ..     225     287 ..     215     302 .. 0.78

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 6.8e-05
                      EEEEEETT--HHHHHHCC--TTS-EE--..SSTTHHHH-HHHHHHHTTTSE.EEEEE-TT--H CS
  Sigma54_activ_2  24 vfltGekGsgkelvArlLhknsgpwlei..fvverlaklpldlleqakggt.Lylkdiadlsk 83 
                      v+  G++G+gk+lvAr+L++  +    +  f + ++a+  ++++ +a+ ++ L++++   l++
       KOO24842.1 225 VLFHGPPGTGKTLVARALASTCSSAGRPvaFFMRKGADVLSKWVGEAEKQLrLLFEEATRLQP 287
                      8999**************987555544411567899999999998885553377777766665 PP

>> AAA_28  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.0   8.2e-05     0.061       2      35 ..     225     264 ..     224     290 .. 0.72

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 8.2e-05
      AAA_28   2 ivitGgestGKTtlleaLaar....gypvv..pEaareil 35 
                 + + G+++tGKT +++aLa++    g pv    + + ++l
  KOO24842.1 225 VLFHGPPGTGKTLVARALASTcssaGRPVAffMRKGADVL 264
                 6799***************776667777654455555555 PP

>> Mg_chelatase  Magnesium chelatase, subunit ChlI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.1   6.4e-05     0.048      25      44 ..     225     244 ..     218     255 .. 0.89

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 6.4e-05
  Mg_chelatase  25 lllvGppGsGKtmlakrlps 44 
                   +l+ GppG+GKt++a++l+s
    KOO24842.1 225 VLFHGPPGTGKTLVARALAS 244
                   79**************9986 PP

>> TIP49  TIP49 P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.0   5.8e-05     0.043      51      97 ..     223     272 ..     215     284 .. 0.82

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 5.8e-05
                 XXXXXXXXXXXXXXXXXXXXXXXXX...XXXXXXXXXXXXXXXXXXXXXX CS
       TIP49  51 ravLlaGpsgtGktalaiaiskelg...edvpfvalsgsevyslevkkte 97 
                 r+vL+ Gp+gtGkt +a a++   +   + v f + +g++v s  v  +e
  KOO24842.1 223 RGVLFHGPPGTGKTLVARALASTCSsagRPVAFFMRKGADVLSKWVGEAE 272
                 89***************999876543227899999999999998776665 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   9.6e-05     0.071      36      71 ..     225     260 ..     219     318 .. 0.85

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 9.6e-05
      AAA_25  36 allaGapgtGKttlaldlalava.tGkpwlgpvapeq 71 
                 +l+ G+pgtGKt +a  la +++  G+p++  +  + 
  KOO24842.1 225 VLFHGPPGTGKTLVARALASTCSsAGRPVAF-FMRKG 260
                 5789******************999999877.33344 PP

>> DUF2075  Uncharacterized conserved protein (DUF2075)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   7.9e-05     0.059       5      42 ..     226     261 ..     223     294 .. 0.85

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 7.9e-05
     DUF2075   5 lVtGvaGtGKtvvllnllaeleddeeertavylsvNhp 42 
                 l +G +GtGKt+v+ +l+ ++  ++ +r ++++++ ++
  KOO24842.1 226 LFHGPPGTGKTLVARALASTC--SSAGRPVAFFMRKGA 261
                 668******************..888888888776555 PP

>> AAA_11  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   0.00012     0.089      20      41 ..     225     246 ..     217     278 .. 0.82

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 0.00012
      AAA_11  20 tliqGPPGtgKTktivellsql 41 
                 +l++GPPGtgKT +  +l s  
  KOO24842.1 225 VLFHGPPGTGKTLVARALASTC 246
                 699*********9998888776 PP

>> ResIII  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   0.00011     0.085      24      75 ..     222     272 ..     195     313 .. 0.82

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 0.00011
                 TSEEEEEESTTSTHHHHHHHHHHHH-S.....-EEEEESSHHHHHHHHHHGG CS
      ResIII  24 dkrglikmaTGtGKTlvaaklierllkkgkeekflflvprkslleqtleefk 75 
                  + +l++ + GtGKTlva +l+  ++++g+   ++f+  + ++l+++  e +
  KOO24842.1 222 PRGVLFHGPPGTGKTLVARALASTCSSAGR-PVAFFMRKGADVLSKWVGEAE 272
                 56788*******************999755.577778888899999986654 PP

>> RNA_helicase  RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   0.00021      0.16       1      24 [.     225     248 ..     225     275 .. 0.78

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 0.00021
  RNA_helicase   1 iwlyGpsgeGKStlakeLakallk 24 
                   ++++Gp+g+GK+++a+ La++ ++
    KOO24842.1 225 VLFHGPPGTGKTLVARALASTCSS 248
                   689**************9988764 PP

>> Sigma54_activat  Sigma-54 interaction domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   0.00035      0.26      24      52 ..     224     252 ..     213     262 .. 0.85

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00035
                      -EEEECSTTSSHHHHHHHHHHHSTTTTS- CS
  Sigma54_activat  24 svlitGesGtGKellaraiheaskrkekp 52 
                       vl +G  GtGK+l+ara+ ++ + + +p
       KOO24842.1 224 GVLFHGPPGTGKTLVARALASTCSSAGRP 252
                      69*****************9988777766 PP

>> AAA_7  P-loop containing dynein motor region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   0.00035      0.26      33      58 ..     222     247 ..     212     258 .. 0.82

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00035
       AAA_7  33 kkpvllvGptGtGKtviikdllkkld 58 
                  + vl+ Gp GtGKt++++ l ++++
  KOO24842.1 222 PRGVLFHGPPGTGKTLVARALASTCS 247
                 5779*************999887765 PP

>> Parvo_NS1  Parvovirus non-structural protein NS1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.0   0.00038      0.29     117     140 ..     225     248 ..     218     251 .. 0.88

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.00038
   Parvo_NS1 117 vwfyGpantGktnlaeaIakavpl 140
                 v+f+Gp+ tGkt +a+a+a ++ +
  KOO24842.1 225 VLFHGPPGTGKTLVARALASTCSS 248
                 89*****************99875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (482 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       432  (0.024095); expected 358.6 (0.02)
Passed bias filter:                      395  (0.0220313); expected 358.6 (0.02)
Passed Vit filter:                        76  (0.00423894); expected 17.9 (0.001)
Passed Fwd filter:                        24  (0.00133861); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              24  [number of targets reported over threshold]
# CPU time: 0.58u 0.28s 00:00:00.86 Elapsed: 00:00:00.44
# Mc/sec: 3320.36
//
Query:       KOO24843.1  [L=389]
Description: hypothetical protein Ctob_008615 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      2e-15   57.0   8.2    1.6e-07   31.7   0.4    4.5  4  Agenet    Agenet domain


Domain annotation for each model (and alignments):
>> Agenet  Agenet domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.9   0.2   1.8e-07    0.0033       1      48 [.      48     109 ..      48     133 .. 0.86
   2 !    6.4   0.0   0.00071        13      15      37 ..     198     219 ..     190     234 .. 0.80
   3 !    3.0   0.1    0.0079   1.4e+02      10      32 ..     237     261 ..     227     291 .. 0.71
   4 !   31.7   0.4   8.7e-12   1.6e-07       1      51 [.     335     386 ..     335     388 .. 0.84

  Alignments for each domain:
  == domain 1  score: 17.9 bits;  conditional E-value: 1.8e-07
      Agenet   1 GdkVEvlsdeegfrGaWfrAtilkv.kegd...........kylVeYdd.lddddgskpl.e 48 
                 Gd+ E  s +eg+ G+W+   i++v  eg+           ++lV Y++ +d d+++ +l  
  KOO24843.1  48 GDHMELTSLDEGLIGSWYAVEIVEVeQEGEadvgagkpagpRALVTYTAyPDQDQEWVELsY 109
                 8999*********************7333366777778888********9999999988844 PP

  == domain 2  score: 6.4 bits;  conditional E-value: 0.00071
      Agenet  15 GaWfrAtilkvkegdkylVeYdd 37 
                 G W +A +lkv++++++lV Y +
  KOO24843.1 198 G-WNTAEVLKVNDDSTLLVAYLA 219
                 5.99*******8888******98 PP

  == domain 3  score: 3.0 bits;  conditional E-value: 0.0079
      Agenet  10 eegf..rGaWfrAtilkvkegdkyl 32 
                 eeg   +++W +A ++ v +g+++ 
  KOO24843.1 237 EEGNtnQVSWKPAEVVAVLGGGRFR 261
                 555534679********98777654 PP

  == domain 4  score: 31.7 bits;  conditional E-value: 8.7e-12
      Agenet   1 GdkVEvlsdeegfrGaWfrAtilkvkegdkylVeYdd.lddddgskpleEwv 51 
                 G +VEv+  e g++G+W++A +l  ke d ++V Yd+ ++    s+  +E v
  KOO24843.1 335 GMEVEVRGVEVGYEGSWYSAEVLAAKEADFATVVYDElFEAPTASTQAKEEV 386
                 889**********************999*********555555555556655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (389 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       429  (0.0239277); expected 358.6 (0.02)
Passed bias filter:                      349  (0.0194657); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.23s 00:00:00.70 Elapsed: 00:00:00.40
# Mc/sec: 2918.26
//
Query:       KOO24844.1  [L=356]
Description: protein phosphatase 2c 5, partial [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.1e-26   92.1   0.0    5.4e-26   91.8   0.0    1.2  1  PP2C      Protein phosphatase 2C
      3e-09   37.1   0.3    9.2e-08   32.2   0.3    2.2  1  SpoIIE    Stage II sporulation protein E (SpoIIE)


Domain annotation for each model (and alignments):
>> PP2C  Protein phosphatase 2C
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   91.8   0.0     6e-30   5.4e-26      40     252 ..       5     222 ..       1     229 [. 0.85

  Alignments for each domain:
  == domain 1  score: 91.8 bits;  conditional E-value: 6e-30
                 EEEESSSHHHHHHHHHHHHHHH.HHHHCHTTHHHHHHHHHHHHH.HHHHHHHHHHHHCHCCT-EEEEEEEEEETTE..EEEEEESS-EEEEEETTEEE. CS
        PP2C  40 fdghggseaakyarehleeilk.sqksfeelekleqalrksfla.dtdeelksskantepsksGstavvalirgtk..lyvAnvGDSravLcrkgnak. 133
                 +dghgg eaa++  +hl e+l+ +++ ++++  l qa+  +f + +    l    +  e  + G+t +v+li++t+  l ++nvGDS a L+ ++ a  
  KOO24844.1   5 CDGHGGPEAASFVLKHLLELLAeESCGDSSGSALAQAIERTFVRlH--ALLHA--D--ERHTAGTTVTVCLINETRgeLTMGNVGDSAAFLVLANPANs 97 
                 9*****************776615667777779***********33..33333..2..4689*****************************99999999 PP

                 .......EECS---ST.TSHHHHHHHHHTT--EEECCEEETTT...........BSBSB-EE-GGGTCCCCCCSTSB---EEEEEEE-TTEEEEEEE-H CS
        PP2C 134 .......keltedHkp.sdedEreRIeeaggsvsngegrvngs...........LavsRalGDlelkpketeeqlvsaePdvtsvklteedefliLacd 213
                         +lt  H+  +++dEr+R++eagg++   +  v g            +  +Ra+GD +  p        s+ Pd+ + ++ e   ++++a+d
  KOO24844.1  98 akpkqagIRLTSEHRLqESDDERRRVSEAGGKLG--QVVVGGFpngplrafpggVCCARAIGDSDCGP------WLSPVPDTKVMPFPEA-ACVLIASD 187
                 99**99999999998725689*************..555555588899999****************9......********99999765.67788*** PP

                 HHHTTSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHC CS
        PP2C 214 Glwdvlsdqeavdlvrdelekkkspeevaeelvdeaiar 252
                 G+wd l+ ++++  + +  +      e+a+++vdea++ 
  KOO24844.1 188 GVWDALPCETVIKRALKSKD----VHEAAKRIVDEALRA 222
                 *******9999877777666....589*******99864 PP

>> SpoIIE  Stage II sporulation protein E (SpoIIE)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.2   0.3     1e-11   9.2e-08       9     190 ..       2     234 ..       1     235 [. 0.85

  Alignments for each domain:
  == domain 1  score: 32.2 bits;  conditional E-value: 1e-11
                 EEECSSSSHHHHHHHHHHHHHHHHHHHTTTS......HHHHHHHHHHHCHCTTSTT....TTCEEEEEEEETTTTEEEEEEESSSSEEEEETTSTEEEE CS
      SpoIIE   9 vgDvvGhGleAalimgllrsalrelatagle......paevlkrlnralardleee...erfaTavlavydpstgkleyanaGhpppllvrpdggtkll 98 
                  gD+ GhG + a+ +  l+ +l+ la+++        +a++++r+  +l++ l+ +     ++T++++ +++ +g+l++ n+G++  +lv ++  +  +
  KOO24844.1   2 CGDCDGHGGPEAA-SFVLKHLLELLAEESCGdssgsaLAQAIERTFVRLHALLHADerhTAGTTVTVCLINETRGELTMGNVGDSAAFLVLANPANSAK 99 
                 69999*9987665.455677777777666666778887777776666665555555555599******************************8899999 PP

                 E--SS--TTTSSS......................................................T-EEEEEEE--TTEEEEEESCCCCSSSHHHHH CS
      SpoIIE  99 lastglplGilpe......................................................adyetaelelepgdtlllyTDGvtEardsdge 143
                 +++ g+ l                                                             ++t+ +++++   +l+++DGv +a   ++ 
  KOO24844.1 100 PKQAGIRLTSEHRlqesdderrrvseaggklgqvvvggfpngplrafpggvccaraigdsdcgpwlsPVPDTKVMPFPEAACVLIASDGVWDALPCETV 198
                 99999998885559****************************************************99999999********************77666 PP

                 HCCCHHCHHHHCT.....HCCHHHHHHHHHHHHTTSSSSS-EEEEEE CS
      SpoIIE 144 lfgkerllallasaegesleelldalveellelgsgeleDDitllvl 190
                 +   +r+   l+s   ++++e ++++v+e+l++  ++++DDit +++
  KOO24844.1 199 I---KRA---LKS---KDVHEAAKRIVDEALRA--RGMRDDITCVCI 234
                 6...334...443...349*************5..59******9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (356 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       372  (0.0207485); expected 358.6 (0.02)
Passed bias filter:                      311  (0.0173462); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.44u 0.24s 00:00:00.68 Elapsed: 00:00:00.39
# Mc/sec: 2763.97
//
Query:       KOO24845.1  [L=1005]
Description: l-arabinokinase-like protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.8e-10   39.9   0.1    3.2e-08   33.2   0.0    2.3  2  Glyco_trans_1_3  Glycosyl transferase family 1
    6.8e-10   39.0   1.1    3.1e-09   36.9   1.1    2.3  1  GHMP_kinases_N   GHMP kinases N terminal domain
    1.2e-08   35.2   0.1    4.2e-08   33.4   0.1    2.0  1  GHMP_kinases_C   GHMP kinases C terminal
    3.8e-07   29.6   0.3    7.9e-06   25.3   0.0    3.1  3  GalKase_gal_bdg  Galactokinase galactose-binding signature
  ------ inclusion threshold ------
       0.03   14.3   1.9      0.087   12.8   0.7    2.5  2  Glyco_transf_4   Glycosyltransferase Family 4


Domain annotation for each model (and alignments):
>> Glyco_trans_1_3  Glycosyl transferase family 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.2   0.0   8.8e-12   3.2e-08       3     123 ..      16     144 ..      14     176 .. 0.89
   2 !    4.3   0.0    0.0055        20     245     307 ..     270     333 ..     263     345 .. 0.83

  Alignments for each domain:
  == domain 1  score: 33.2 bits;  conditional E-value: 8.8e-12
  Glyco_trans_1_3   3 ilYgvsGeGaGhasRsrvvlehL.arghevkvvvsgraldvL......eke..fdvneivglsivyeenrvrklktllknlqvaaklaknvkal 87 
                       +Y vsG+G G asR+ ++ +hL a gh v++v +   +  L      + +  f    + ++ i ++   v ++k ll   ++ ++ ++ v+a 
       KOO24845.1  16 FVYFVSGQGFGLASRVVEITSHLiAAGHCVHIVGQAPHTIWLqsidcpK-RliFRNALVDSFAIQSDALTVDRMKSLLDFEAIFERQEEIVEAE 108
                      59*********************777*******9988888886655532.323566778999999999***********99************* PP

  Glyco_trans_1_3  88 velvedfrpdlvvtDFealtallakrhkLPvisvdn 123
                         +++ + dlvv D  ++++ +a+r ++ +++v n
       KOO24845.1 109 ATYLREVKADLVVVDIAPMACTAAARAGVRCVAVTN 144
                      ********************************9988 PP

  == domain 2  score: 4.3 bits;  conditional E-value: 0.0055
  Glyco_trans_1_3 245 egFleDLataravi.agagftLmtealyLkkPlLavPvarqFeqvlnalyLerlgyGaavdakd 307
                      + +  DL  a  v+    g+  ++ea+   kP++ v      eq +  + Le+ g+ + ++ +d
       KOO24845.1 270 DEYTPDLIDATDVLlGKVGYGTVSEAVAHLKPFVWVRRDYFNEQPFLLRLLEAHGLAIELHRDD 333
                      557789998888761568******************999999**********999999877666 PP

>> GHMP_kinases_N  GHMP kinases N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.9   1.1   8.8e-13   3.1e-09       2      65 ..     597     682 ..     596     683 .. 0.82

  Alignments for each domain:
  == domain 1  score: 36.9 bits;  conditional E-value: 8.8e-13
                     EEEEESSHTTSSSCHHHHHHHHHHHHHHHHTT.....................EHHHH....HHHHHHHHHHHHHHHHHSHHHHHHHHS CS
  GHMP_kinases_N   2 ivikseiPvgaGLGSSAAlavalvaAllallg.....................lslee....aklaleaerlaqggngsggDvaasvyG 65 
                     i ++s++P g+G +SSA++ va  +All+ +                      +          la+  e+ ++g+ ++ +D+ as++G
      KOO24845.1 597 ILLRSDVPEGKGVSSSASIEVASMCALLQCYApevaavcgpalapgaapgtipI---SgrelGLLAQMVENRVVGAPCGVMDQMASLLG 682
                     789****************************65667777777777777666441...03343668********99************99 PP

>> GHMP_kinases_C  GHMP kinases C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.4   0.1   1.2e-11   4.2e-08       8      82 ..     901     975 ..     885     978 .. 0.89

  Alignments for each domain:
  == domain 1  score: 33.4 bits;  conditional E-value: 1.2e-11
  GHMP_kinases_C   8 gdlellgellnlsqrselkavvgilppeleellealselG....algaklsGaGgGptvfalfkdkdeaeqvaralree 82 
                     +++e lgel+++s++s   + +g  ++  ++l+e+++++G     +gak++G G+G+tv++l+  + +a ++++a+  +
      KOO24845.1 901 RQVEMLGELMYQSHAS--YTACGLGSDGTDRLVELIRRAGvkrgLYGAKITGGGSGGTVAVLG--HVGAGEAVEAVVDQ 975
                     56789**********6..778******************************************..99999999998555 PP

>> GalKase_gal_bdg  Galactokinase galactose-binding signature
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.0      0.39   1.4e+03       9      18 ..     341     352 ..     333     365 .. 0.76
   2 !   25.3   0.0   2.2e-09   7.9e-06      12      48 ..     472     508 ..     465     509 .. 0.91
   3 ?   -0.6   0.0      0.28     1e+03       2      18 ..     975     993 ..     974     999 .. 0.83

  Alignments for each domain:
  == domain 1  score: -1.1 bits;  conditional E-value: 0.39
                      --.-.EEEEEEE CS
  GalKase_gal_bdg   9 ke.p.fvasAPG 18 
                      ++ + ++asAPG
       KOO24845.1 341 QKlEqAYASAPG 352
                      444449*****9 PP

  == domain 2  score: 25.3 bits;  conditional E-value: 2.2e-09
                      EEEEEEEEEEEE--S-TTTT-EEEEEEEEEEEEEEEE CS
  GalKase_gal_bdg  12 fvasAPGRvnLiGEHtDYngGfVlpmAieqdiyiavs 48 
                      ++a+APGR++L+G   DY+g  Vl m i  ++++a++
       KOO24845.1 472 VLARAPGRLDLMGGIADYSGSLVLQMPIREACLVAMQ 508
                      89********************************986 PP

  == domain 3  score: -0.6 bits;  conditional E-value: 0.28
                      HHHHHHS---..EEEEEEE CS
  GalKase_gal_bdg   2 eFqktFgkep..fvasAPG 18 
                      ++++++g++p  f  s+PG
       KOO24845.1 975 QYTREYGHKPyvFTGSSPG 993
                      58899****8678888998 PP

>> Glyco_transf_4  Glycosyltransferase Family 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.7   2.4e-05     0.087       3     136 ..      26     178 ..      26     228 .. 0.63
   2 ?   -2.9   0.0       1.7   6.1e+03      16      34 ..     978     996 ..     965    1001 .. 0.81

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 2.4e-05
  Glyco_transf_4   3 GverhvleLaraLarrGheVtvv..tpgddgpleeev.....................elvvrvprvplpllkrllrslaflrrlrrllkrekpD 74 
                     G +  v+e++ +L ++Gh V++v  +p++     +                        l v+  +  l + + + r    + + +  l++ k D
      KOO24845.1  26 GLASRVVEITSHLIAAGHCVHIVgqAPHT--IWLQSIdcpkrlifrnalvdsfaiqsdALTVDRMKSLLDFEAIFERQEEIVEAEATYLREVKAD 118
                     78889******************664444..4444443466677777777777755432222222222233444444444455667789999*** PP

  Glyco_transf_4  75 vvHahspaalgaallalrrrlgiplVltvHglye....krllkarlkplsrllralerrl..lrradr 136
                     +v +  ++ +  + +a+r   g+++V+   ++++         +    + r++  +e+ +  +++ad 
      KOO24845.1 119 LVVVDIAPMA--CTAAAR--AGVRCVAVTNFSWDyiyaE----YIETQGVRFRAVCEKIAqaYSKADL 178
                     **77775554..444666..7************743330....2223333333333333344555554 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 1.7
  Glyco_transf_4  16 arrGheVtvvtpgddgple 34 
                     ++ Gh+ +v+t +++g+l+
      KOO24845.1 978 REYGHKPYVFTGSSPGALA 996
                     5679999999999888765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1005 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       334  (0.018629); expected 358.6 (0.02)
Passed bias filter:                      300  (0.0167327); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.62u 0.25s 00:00:00.87 Elapsed: 00:00:00.40
# Mc/sec: 7587.34
//
Query:       KOO24846.1  [L=144]
Description: peptidyl-prolyl cis-trans isomerase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      4e-16   59.8   0.0    5.5e-16   59.3   0.0    1.3  1  Rotamase    PPIC-type PPIASE domain
    1.4e-14   54.6   0.0    2.3e-14   53.9   0.0    1.3  1  Rotamase_3  PPIC-type PPIASE domain
  ------ inclusion threshold ------
      0.034   15.0   0.0      0.045   14.6   0.0    1.2  1  Rotamase_2  PPIC-type PPIASE domain


Domain annotation for each model (and alignments):
>> Rotamase  PPIC-type PPIASE domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.3   0.0   9.2e-20   5.5e-16       1      95 [.      35     142 ..      35     144 .] 0.85

  Alignments for each domain:
  == domain 1  score: 59.3 bits;  conditional E-value: 9.2e-20
                 EEEESSCCS...............E----HHHHHHHHHHHHCCTCCCHHHHHHHHCCC-.-CHHHCCTTEEECEETTTS-CCCHHHHCCS-CT-B-S-E CS
    Rotamase   1 HILlkvkek...............asekeraeakakaeeileqlksgedtFeelArkySddknsakngGdlgwvekgqlppefekaafslkkGeisepv 84 
                 H+L+k++ +               + e++ ae ++ +++i+++ +++e+ F+++A+ +S d++s kngGdlg + +g+++++fe+a ++   G is + 
  KOO24846.1  35 HLLIKFSGSrnpvsrrtnestanvSGEAAMAELQTYIDKIAAEGNTEEA-FAKYAEMRS-DCGSFKNGGDLGPFGPGEMQKQFEDATAATPVGGISPIC 131
                 6666666666666666666655556677778889999999999999988.*********.*************************************** PP

                 EETTEEEEEEE CS
    Rotamase  85 etkfGfhiikl 95 
                  ++ G+hii +
  KOO24846.1 132 LSDSGYHIIFR 142
                 ********965 PP

>> Rotamase_3  PPIC-type PPIASE domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.9   0.0   3.9e-18   2.3e-14      11     110 ..      26     140 ..      17     143 .. 0.86

  Alignments for each domain:
  == domain 1  score: 53.9 bits;  conditional E-value: 3.9e-18
  Rotamase_3  11 sakdsvkvshIlistkg................kesrseeeakakadsllaalkegadFaalAkeySdDpaskenGGelgwftkgqmvkeFedavfslk 93 
                 ++  +  ++h+li+ +g                + + + +e +  +d+++a+ +  + Fa+ A+  Sd  +s +nGG+lg f +g+m+k+Feda  +++
  KOO24846.1  26 NEMPKYAARHLLIKFSGsrnpvsrrtnestanvSGEAAMAELQTYIDKIAAEGNTEEAFAKYAEMRSD-CGSFKNGGDLGPFGPGEMQKQFEDATAATP 123
                 444477889999999999999999999888844444455566999*******************8887.888*************************** PP

  Rotamase_3  94 kgeiskvvktdfGyHii 110
                 +g is +  +d GyHii
  KOO24846.1 124 VGGISPICLSDSGYHII 140
                 ****************9 PP

>> Rotamase_2  PPIC-type PPIASE domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.6   0.0   7.5e-06     0.045      34     106 ..      58     143 ..      41     144 .] 0.57

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 7.5e-06
  Rotamase_2  34 vaaeaalalakag.........aekdfaalakgnskk.....aadlgifesasnlpeelakaafalkpgevsgpvetdngyyivkvt 106
                 v+ eaa+a+++           +e++fa+ a   s++      +dlg f    ++ +++++a +a+++g++s++  +d gy+i++ t
  KOO24846.1  58 VSGEAAMAELQTYidkiaaegnTEEAFAKYAEMRSDCgsfknGGDLGPFGP-GEMQKQFEDATAATPVGGISPICLSDSGYHIIFRT 143
                 455555555444411122222233333333333322211111222222222.44667***************99999******9865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (144 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       446  (0.0248759); expected 358.6 (0.02)
Passed bias filter:                      381  (0.0212505); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.35u 0.23s 00:00:00.57 Elapsed: 00:00:00.36
# Mc/sec: 1193.61
//
Query:       KOO24847.1  [L=244]
Description: hypothetical protein Ctob_008619 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
     0.0016   18.6   5.8     0.0024   18.0   0.0    2.6  2  Cys_rich_FGFR  Cysteine rich repeat
  ------ inclusion threshold ------
       0.86    9.3  10.1        1.2    8.8  10.1    1.1  1  YkyA           Putative cell-wall binding lipoprotein


Domain annotation for each model (and alignments):
>> Cys_rich_FGFR  Cysteine rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.8   1.9     0.031   2.8e+02      27      50 ..      21      48 ..      16      56 .. 0.67
   2 !   18.0   0.0   2.7e-07    0.0024      24      53 ..      64      94 ..      62      99 .. 0.88

  Alignments for each domain:
  == domain 1  score: 1.8 bits;  conditional E-value: 0.031
  Cys_rich_FGFR 27 aCkddiekfC..sdi..eegegqvleCL 50
                   +C+dd + +C  +d+    +++ + +CL
     KOO24847.1 21 SCEDDTAAHClcEDEacDMSPEGIDACL 48
                   8*****9977444444555555555555 PP

  == domain 2  score: 18.0 bits;  conditional E-value: 2.7e-07
  Cys_rich_FGFR 24 LqkaCkddiek..fCsdieegegqvleCLeeh 53
                   L+  Ck di+    C++ ++g+g++++CL + 
     KOO24847.1 64 LLAGCKADISGdgVCAA-AHGNGETMPCLLQR 94
                   7889*****7789****.***********875 PP

>> YkyA  Putative cell-wall binding lipoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.8  10.1   0.00013       1.2      25     111 ..     130     218 ..     126     242 .. 0.83

  Alignments for each domain:
  == domain 1  score: 8.8 bits;  conditional E-value: 0.00013
        YkyA  25 ekLtelekkeqelyeeiielgmdefdkikklsdealenveeReellekekesieeakeefek..ikeeieeiedeelkkeaeelieame 111
                 ++++el k+++e+y++ +++++++ +  k++  e    + +Re  +e  k++++ea  + e+  +k  ie    e++k  ae++  +++
  KOO24847.1 130 NEISELNKDDKETYNSWMSKKKKKGKSDKDKEREYAVKAAKRERVIELIKAAVSEAVSAAEEpsVKVAIEAASAEAKKALAEDMTGTLK 218
                 799*********************9999999999999************9999999888875226666888888888888888887766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (244 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1730  (0.0964917); expected 358.6 (0.02)
Passed bias filter:                      713  (0.039768); expected 358.6 (0.02)
Passed Vit filter:                        53  (0.0029561); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.47u 0.27s 00:00:00.74 Elapsed: 00:00:00.41
# Mc/sec: 1776.40
//
Query:       KOO24848.1  [L=293]
Description: hypothetical protein Ctob_008618 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    4.6e-10   38.4  16.9       0.02   14.7   0.1    5.4  5  IQ           IQ calmodulin-binding motif
  ------ inclusion threshold ------
       0.24   11.6   0.7       0.67   10.1   0.7    1.7  1  HHV-5_US34A  Herpesvirus US34A protein family
       0.48    9.1   6.9        0.3    9.8   1.7    2.5  2  Gryzun       Gryzun, putative trafficking through Golgi
       0.52   10.5   5.8       0.19   11.9   0.7    2.6  3  FXR_C1       Fragile X-related 1 protein C-terminal region 2


Domain annotation for each model (and alignments):
>> IQ  IQ calmodulin-binding motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.4   0.3   0.00094       4.2       2      19 ..     102     119 ..     101     119 .. 0.93
   2 !    5.3   0.3    0.0045        20       2      19 ..     137     154 ..     136     156 .. 0.88
   3 !   11.6   0.6   4.2e-05      0.19       2      17 ..     190     205 ..     189     207 .. 0.94
   4 !    8.4   0.0   0.00046       2.1       2      20 ..     245     263 ..     244     264 .. 0.89
   5 !   14.7   0.1   4.4e-06      0.02       2      20 ..     272     290 ..     271     291 .. 0.92

  Alignments for each domain:
  == domain 1  score: 7.4 bits;  conditional E-value: 0.00094
                 HHHHHHHHHHHHHHHHHH CS
          IQ   2 kaaikIQaawRGylaRkr 19 
                 +aa k+Qa  RG + Rk+
  KOO24848.1 102 AAAAKMQALQRGRMERKK 119
                 69**************96 PP

  == domain 2  score: 5.3 bits;  conditional E-value: 0.0045
                 HHHHHHHHHHHHHHHHHH CS
          IQ   2 kaaikIQaawRGylaRkr 19 
                 +aa k+Qaa RG+  Rk 
  KOO24848.1 137 AAAAKMQAARRGHADRKV 154
                 69***********99985 PP

  == domain 3  score: 11.6 bits;  conditional E-value: 4.2e-05
                 HHHHHHHHHHHHHHHH CS
          IQ   2 kaaikIQaawRGylaR 17 
                 +aa+k+Qa  RG +aR
  KOO24848.1 190 AAATKMQAIQRGNMAR 205
                 69*************9 PP

  == domain 4  score: 8.4 bits;  conditional E-value: 0.00046
                 HHHHHHHHHHHHHHHHHHH CS
          IQ   2 kaaikIQaawRGylaRkry 20 
                 +aa k+Qa+ RG + R +y
  KOO24848.1 245 AAAAKLQAVQRGKKERDAY 263
                 69***********999877 PP

  == domain 5  score: 14.7 bits;  conditional E-value: 4.4e-06
                 HHHHHHHHHHHHHHHHHHH CS
          IQ   2 kaaikIQaawRGylaRkry 20 
                 +aa+k+Q+  RG  aRk++
  KOO24848.1 272 AAAVKMQSMQRGKNARKKL 290
                 7****************85 PP

>> HHV-5_US34A  Herpesvirus US34A protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.7   0.00015      0.67      33      51 ..     252     270 ..     249     282 .. 0.86

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.00015
  HHV-5_US34A  33 avqrvkqerdahlrryeer 51 
                  avqr k+erda+l   +er
   KOO24848.1 252 AVQRGKKERDAYLAAKKER 270
                  9************998888 PP

>> Gryzun  Gryzun, putative trafficking through Golgi
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   1.7   6.7e-05       0.3     106     182 ..      50     125 ..      42     207 .. 0.83
   2 ?    1.1   0.2     0.028   1.3e+02     217     257 ..     239     279 ..     230     292 .. 0.74

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 6.7e-05
      Gryzun 106 kgsadLtlkpgqtkvfelaiilreaGeakvasvtlsveeekFdLeytisekeekeavwWaeskkgakkrrvrkdsdt 182
                 +g+  L l+p+ t ++  ++  + +G+ak+  + +  + ++F+   ++++ +  +a++ a  ++g+++r+ r+d+++
  KOO24848.1  50 AGAKGLKLEPEATAALAEQCCYKRPGDAKAFMIEILAAGDAFTEMEVTADADAAAAKMQA-LQRGRMERKKRADAKA 125
                 58889*************************************866666666666666555.6777777777777765 PP

  == domain 2  score: 1.1 bits;  conditional E-value: 0.028
      Gryzun 217 eNeEdeeaevklevrllGesesalkisvldeeeeaeeaeee 257
                  N E ++a +kl+    G++e ++ +++++e+e+a+ + ++
  KOO24848.1 239 SNPETDAAAAKLQAVQRGKKERDAYLAAKKEREAAAVKMQS 279
                 699************************97776666555432 PP

>> FXR_C1  Fragile X-related 1 protein C-terminal region 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.7   4.3e-05      0.19      24      56 ..      92     125 ..      85     127 .. 0.81
   2 ?   -0.2   0.2      0.26   1.2e+03      31      50 ..     134     153 ..     124     160 .. 0.75
   3 ?   -3.0   0.3       1.9   8.6e+03      25      41 ..     163     179 ..     144     182 .. 0.71

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 4.3e-05
      FXR_C1  24 netdqtaDtdasesqlsanRR.RRsRRRRtDeda 56 
                 +e + taD+da+ ++++a  R R  R++R D  a
  KOO24848.1  92 TEMEVTADADAAAAKMQALQRgRMERKKRADAKA 125
                 5999***********9996552667999999765 PP

  == domain 2  score: -0.2 bits;  conditional E-value: 0.26
      FXR_C1  31 DtdasesqlsanRRRRsRRR 50 
                 + da+ ++++a+RR  + R+
  KOO24848.1 134 EMDAAAAKMQAARRGHADRK 153
                 56889999999999777665 PP

  == domain 3  score: -3.0 bits;  conditional E-value: 1.9
      FXR_C1  25 etdqtaDtdasesqlsa 41 
                 e  + a+ +a+e++++a
  KOO24848.1 163 EMAKKAEREAAEAKAAA 179
                 66777788888877766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (293 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2568  (0.143232); expected 358.6 (0.02)
Passed bias filter:                      540  (0.0301188); expected 358.6 (0.02)
Passed Vit filter:                       124  (0.00691617); expected 17.9 (0.001)
Passed Fwd filter:                        40  (0.00223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.95u 0.33s 00:00:01.28 Elapsed: 00:00:00.47
# Mc/sec: 1855.88
//
Query:       KOO24849.1  [L=201]
Description: hypothetical protein Ctob_008617 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
  ------ inclusion threshold ------
      0.033   13.5   0.0      0.047   13.1   0.0    1.1  1  Tropomyosin  Tropomyosin
       0.11   12.2   0.0        0.2   11.4   0.0    1.4  1  Eclosion     Eclosion hormone


Domain annotation for each model (and alignments):
>> Tropomyosin  Tropomyosin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.0   5.2e-06     0.047      15      86 ..      68     140 ..      65     161 .. 0.78

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 5.2e-06
  Tropomyosin  15 erlekakkkleeaekkaekaeaEvaalnrriqlleeelerteerleealekLeeaekaades.erarKvlEnr 86 
                  ++  ++ + l + e++ +  eaEv  +nr i   e+ l++  e  ++ l+ L e++++ +++ +++++++E+ 
   KOO24849.1  68 DAKSDLVNVLSSLEAHWHVLEAEVVEINRDIDYCEQCLRKYGEWFNSPLQYLRELKRSKKNKmKEIIRTMESF 140
                  55666777788889999999**********************************9988777668888888853 PP

>> Eclosion  Eclosion hormone
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   2.3e-05       0.2      14      30 ..      98     114 ..      88     117 .. 0.85

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 2.3e-05
    Eclosion  14 lenCaqCkkmfGefFeG 30 
                 ++ C+qC + +Ge+F+ 
  KOO24849.1  98 IDYCEQCLRKYGEWFNS 114
                 788************85 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (201 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1062  (0.0592336); expected 358.6 (0.02)
Passed bias filter:                      904  (0.0504211); expected 358.6 (0.02)
Passed Vit filter:                        84  (0.00468515); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.46u 0.28s 00:00:00.74 Elapsed: 00:00:00.41
# Mc/sec: 1467.13
//
Query:       KOO24850.1  [L=79]
Description: hypothetical protein Ctob_008616 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    6.8e-09   36.1   1.4    9.5e-06   26.0   0.5    1.6  2  EF-hand_7       EF-hand domain pair
    4.2e-08   32.3   1.0      8e-05   22.0   0.1    2.4  2  EF-hand_5       EF hand
    1.6e-07   30.4   0.1     0.0014   18.0   0.0    2.3  2  EF-hand_1       EF hand
    3.4e-07   29.7   0.2     0.0026   17.6   0.1    2.3  2  EF-hand_6       EF-hand domain
    3.4e-05   23.6   0.0     0.0055   16.5   0.0    2.2  2  EF-hand_8       EF-hand domain pair
  ------ inclusion threshold ------
       0.05   13.9   0.0      0.065   13.6   0.0    1.2  1  T3RM_EcoP15I_C  Type III R-M EcoP15I C-terminal domain


Domain annotation for each model (and alignments):
>> EF-hand_7  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.4   0.0   1.3e-05     0.038      44      62 ..      12      30 ..       3      36 .. 0.64
   2 !   26.0   0.5   3.2e-09   9.5e-06       2      59 ..      12      67 ..      11      73 .. 0.85

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 1.3e-05
   EF-hand_7 44 eelellfkefDtdkdGvis 62
                e l++lf  +Dtd+dG+is
  KOO24850.1 12 ETLKALFTRLDTDGDGKIS 30
                3355666666666666665 PP

  == domain 2  score: 26.0 bits;  conditional E-value: 3.2e-09
   EF-hand_7  2 eklkeaFkelDtdgdgyldkeellr..llrkifqgagegsklsdeelellfkefDtdkdG 59
                e lk  F  lDtdgdg+++   +++  l+  i    +e  + ++e l +lf+ +D+d++G
  KOO24850.1 12 ETLKALFTRLDTDGDGKISAIAYHKehLVIDIL---EELAD-RRERLAELFDAVDKDHNG 67
                678999***************999877444443...78888.999**************9 PP

>> EF-hand_5  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.0   0.1   2.7e-08     8e-05       1      18 [.      14      31 ..      14      31 .. 0.94
   2 !    8.9   0.1   0.00036       1.1       2      14 ..      55      67 ..      54      68 .. 0.87

  Alignments for each domain:
  == domain 1  score: 22.0 bits;  conditional E-value: 2.7e-08
                HHHHHHHH-SS-SSCE-H CS
   EF-hand_5  1 lkdtFqaiDlNgDGkIsk 18
                lk++F ++D++gDGkIs+
  KOO24850.1 14 LKALFTRLDTDGDGKISA 31
                789*************96 PP

  == domain 2  score: 8.9 bits;  conditional E-value: 0.00036
                HHHHHHH-SS-SS CS
   EF-hand_5  2 kdtFqaiDlNgDG 14
                 ++F+a+D+++ G
  KOO24850.1 55 AELFDAVDKDHNG 67
                579********99 PP

>> EF-hand_1  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.0   0.0   4.7e-07    0.0014       2      18 ..      14      30 ..      13      31 .. 0.92
   2 !   10.3   0.0   0.00013       0.4       2      15 ..      54      67 ..      53      71 .. 0.89

  Alignments for each domain:
  == domain 1  score: 18.0 bits;  conditional E-value: 4.7e-07
                HHHHHHHHTTTSSSEEE CS
   EF-hand_1  2 lkeiFrefDkDgdGkId 18
                lk +F  +D+DgdGkI+
  KOO24850.1 14 LKALFTRLDTDGDGKIS 30
                7999************8 PP

  == domain 2  score: 10.3 bits;  conditional E-value: 0.00013
                HHHHHHHHTTTSSS CS
   EF-hand_1  2 lkeiFrefDkDgdG 15
                l e+F+ +DkD++G
  KOO24850.1 54 LAELFDAVDKDHNG 67
                6799*********9 PP

>> EF-hand_6  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.6   0.1   8.5e-07    0.0026       2      19 ..      14      31 ..      13      32 .. 0.92
   2 !   10.3   0.0   0.00018      0.55       2      16 ..      54      68 ..      53      74 .. 0.82

  Alignments for each domain:
  == domain 1  score: 17.6 bits;  conditional E-value: 8.5e-07
   EF-hand_6  2 lreaFklfDkdgdGkida 19
                l+++F  +D+dgdGki+a
  KOO24850.1 14 LKALFTRLDTDGDGKISA 31
                799*************85 PP

  == domain 2  score: 10.3 bits;  conditional E-value: 0.00018
   EF-hand_6  2 lreaFklfDkdgdGk 16
                l e+F++ Dkd++G 
  KOO24850.1 54 LAELFDAVDKDHNGA 68
                779***********4 PP

>> EF-hand_8  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.0   1.8e-06    0.0055      27      44 ..      13      30 ..       7      35 .. 0.89
   2 !    5.1   0.0     0.007        21      30      42 ..      56      68 ..      52      71 .. 0.88

  Alignments for each domain:
  == domain 1  score: 16.5 bits;  conditional E-value: 1.8e-06
   EF-hand_8 27 evdilfrefDtdgdGkis 44
                 + +lf ++DtdgdGkis
  KOO24850.1 13 TLKALFTRLDTDGDGKIS 30
                5679*************8 PP

  == domain 2  score: 5.1 bits;  conditional E-value: 0.007
   EF-hand_8 30 ilfrefDtdgdGk 42
                +lf+++D d++G+
  KOO24850.1 56 ELFDAVDKDHNGA 68
                79*********96 PP

>> T3RM_EcoP15I_C  Type III R-M EcoP15I C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.0   2.2e-05     0.065      44      87 ..       7      50 ..       6      65 .. 0.90

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 2.2e-05
  T3RM_EcoP15I_C 44 kglesealkaLiekldedkefniekivlfgysfeskelreleen 87
                    ++ ++e+lkaL+ +ld+d + +i+ i + ++++ +  l+el++ 
      KOO24850.1  7 PKAQTETLKALFTRLDTDGDGKISAIAYHKEHLVIDILEELADR 50
                    67899***********************************9865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (79 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       660  (0.0368119); expected 358.6 (0.02)
Passed bias filter:                      538  (0.0300073); expected 358.6 (0.02)
Passed Vit filter:                        53  (0.0029561); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.37u 0.26s 00:00:00.63 Elapsed: 00:00:00.41
# Mc/sec: 580.05
//
Query:       KOO24851.1  [L=195]
Description: hypothetical protein Ctob_006601 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (195 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       399  (0.0222544); expected 358.6 (0.02)
Passed bias filter:                      345  (0.0192426); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.39u 0.27s 00:00:00.66 Elapsed: 00:00:00.41
# Mc/sec: 1420.56
//
Query:       KOO24852.1  [L=334]
Description: sphingolipid delta -desaturase des1-like protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.3e-29  103.0  16.2    4.7e-29  102.0  16.2    1.4  1  FA_desaturase  Fatty acid desaturase
    4.1e-17   61.4   0.2    7.3e-17   60.6   0.2    1.4  1  Lipid_DES      Sphingolipid Delta4-desaturase (DES)


Domain annotation for each model (and alignments):
>> FA_desaturase  Fatty acid desaturase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  102.0  16.2   5.2e-33   4.7e-29       2     243 ..      72     292 ..      71     298 .. 0.77

  Alignments for each domain:
  == domain 1  score: 102.0 bits;  conditional E-value: 5.2e-33
  FA_desaturase   2 swlallla.lllglf.llgitgslaHeaaHgalfkkrklnrwlndllgallglplgisysa.wrisHlrHHaytngpdeDpdlaplal.srfeglf 93 
                    sw++++l+ +++g+  ++++ +  +He+aH+ +fk +  nr++  ++   + +p+gi+y++ +r  Hl HH+  + ++ D+d+++l++ +  +g  
     KOO24852.1  72 SWVPYVLVaYVFGATiTQAL-FLAIHELAHNLFFKTPVYNRYF-SFI---ANFPIGIPYTIpFRGYHLEHHKFQGVDGIDTDIPSLLEcKIVRGPV 162
                    79999988899999977777.9************888888888.788...7777777777548**********99999999998666666666666 PP

  FA_desaturase  94 ryllrlllgllvlgwllalvlglwlrrlarrrapsksrrrkwrllawlllllawlglwlalllllglalllwlvplllllfllalvl.nyveHygg 188
                     ++++     l ++         ++  + +++++++      +l+ wl+ ++ + ++++a++++ +l+  +++++++l++ l+ +   ++ eHy  
     KOO24852.1 163 TKVVWACCQILTYA---------LRPMFIKQQEITR-----MHLYNWLAQIA-FDAAFFAAFGWKPLF--YMVFCIFLAGGLHPCAGhFISEHYV- 240
                    66666666666666.........5555555555444.....77788877777.566667777777776..8899999999999999877777774. PP

  FA_desaturase 189 dwgerqvetsasirsaswllnlltgnlnyHieHHlfPgvpwyrLpelhrrlrell 243
                        +  +t+ +++ +   ln+lt+n +yH+eHH fP vpw+rLpel+r+  e++
     KOO24852.1 241 --FPHKSATQETYS-YYGYLNWLTFNVGYHNEHHDFPYVPWSRLPELKRIAPEFY 292
                    ..555555555555.66*******************************9876655 PP

>> Lipid_DES  Sphingolipid Delta4-desaturase (DES)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.6   0.2   8.1e-21   7.3e-17       2      37 .]      14      49 ..      13      49 .. 0.96

  Alignments for each domain:
  == domain 1  score: 60.6 bits;  conditional E-value: 8.1e-21
   Lipid_DES  2 rsDFeWvytdePHasRRkeILkkhPeikkLmGpdpl 37
                r+DF W ++dePHasRRk IL++hPe+ kL Gp+++
  KOO24852.1 14 REDFFWDTSDEPHASRRKLILAAHPEVSKLQGPEWK 49
                89********************************95 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (334 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       555  (0.0309554); expected 358.6 (0.02)
Passed bias filter:                      364  (0.0203023); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.46u 0.24s 00:00:00.70 Elapsed: 00:00:00.40
# Mc/sec: 2528.20
//
Query:       KOO24853.1  [L=1131]
Description: ankyrin-2 isoform 2 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.2e-63  211.7  13.7    6.2e-13   49.1   0.1    9.2  9  Ank_2       Ankyrin repeats (3 copies)
      1e-55  185.4  15.8    3.7e-08   33.7   0.1   12.3 15  Ank_4       Ankyrin repeats (many copies)
    1.9e-47  158.7  24.3    7.6e-07   29.3   0.1   12.6 12  Ank_5       Ankyrin repeats (many copies)
    4.4e-40  134.4  35.9    0.00015   22.1   0.1   17.2 18  Ank         Ankyrin repeat
    1.1e-39  129.8  19.6    2.7e-05   24.2   0.0   17.6 19  Ank_3       Ankyrin repeat
    1.1e-13   51.1  14.9      2e-13   50.3  14.9    1.5  1  FYVE        FYVE zinc finger
  ------ inclusion threshold ------
      0.015   15.6   0.0      0.034   14.4   0.0    1.5  1  BTB         BTB/POZ domain
          2    8.6  12.4        4.8    7.4  12.4    1.6  1  zf-piccolo  Piccolo Zn-finger
        9.7    6.3   7.9         19    5.4   7.9    1.5  1  DHHC        DHHC palmitoyltransferase


Domain annotation for each model (and alignments):
>> Ank_2  Ankyrin repeats (3 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.4   0.2   2.6e-06    0.0052      31      81 ..     346     407 ..     319     409 .. 0.82
   2 !   10.8   0.0   0.00028      0.57      30      77 ..     417     480 ..     411     487 .. 0.73
   3 !   37.1   0.1   1.8e-12   3.5e-09       2      81 ..     494     587 ..     492     589 .. 0.77
   4 !   26.3   0.0   4.2e-09   8.4e-06      27      82 ..     595     656 ..     588     657 .. 0.83
   5 !   35.6   0.0   5.3e-12   1.1e-08      21      79 ..     658     720 ..     653     724 .. 0.87
   6 !   49.1   0.1   3.1e-16   6.2e-13       2      78 ..     732     819 ..     731     824 .. 0.87
   7 !   48.1   0.0   6.6e-16   1.3e-12       1      74 [.     765     850 ..     765     859 .. 0.83
   8 !   22.0   0.3   9.4e-08   0.00019       1      61 [.     832     914 ..     832     924 .. 0.70
   9 !   10.6   0.0   0.00033      0.66      12      57 ..     976    1025 ..     961    1043 .. 0.57

  Alignments for each domain:
  == domain 1  score: 17.4 bits;  conditional E-value: 2.6e-06
       Ank_2  31 hyAakngnleivklLleh...........adndgrtpLhyAarsghleivklLlekgadinl 81 
                 + A +++  ++++++l +           +d+ grtpL +A + + l  +klLl kgad+n+
  KOO24853.1 346 QDALIHNRADVAEFILTKppaalsavlsaLDDLGRTPLEVALSLDDLTNAKLLLSKGADVNA 407
                 556677777888888875555666676667799*********9999********99****97 PP

  == domain 2  score: 10.8 bits;  conditional E-value: 0.00028
       Ank_2  30 LhyAakngnle........i..vklLleh......adndgrtpLhyAarsghleivklLlekga 77 
                 +h A+ +g l+        i  ++lLle+      +++ g+++L +A ++g + +v lLl + a
  KOO24853.1 417 IHSACYAGALHdprksdltIqkMSLLLEYkasvdaMNKRGESALDVALFNGGPSVVGLLLRNHA 480
                 45677776544455555544559****977886655599***********888*******6544 PP

  == domain 3  score: 37.1 bits;  conditional E-value: 1.8e-12
       Ank_2   2 hlAakngnlelvklLl.....egadpn.k..ngktaLhyAakngnleivklLleh......adndgrtpLhyAarsghleivklLlekgadinl 81 
                 h A+  g  ++++  l      g+++n +  n  t+Lh+Aa++g+  +v  Ll+       +++dg tpL +A+r+g l +  lLl+ gad n+
  KOO24853.1 494 HAASTLGRADVLETALgclsvIGVNLNqQdkNRDTPLHIAASKGDAALVAPLLKSkantelQNEDGSTPLGIAVRQGDLPLTSLLLDAGADRNA 587
                 444445767788888864444446666625799***********999998888744566766699*********************99*99775 PP

  == domain 4  score: 26.3 bits;  conditional E-value: 4.2e-09
       Ank_2  27 ktaLh.yAakngnleivklLleh......adndgrtpLhyAarsghleivklLlekgadinlk 82 
                  t+L+ +Aa+   +e+ k+L+++      ad+ grt+L +A++   le+++lL+ kga+++++
  KOO24853.1 595 VTPLIvLAAEIS-NEVTKALVNAgadlnrADSVGRTALEIAVFRRELELAELLVRKGAKPTTR 656
                 599996777754.49******977665566688*********9999********99**99976 PP

  == domain 5  score: 35.6 bits;  conditional E-value: 5.3e-12
       Ank_2  21 dpnkngktaLhyAakngnleivklLleh......adndgrtpLhyAarsghleivklLlekgadi 79 
                 dp  ng+t Lh+A+ n+++ +v+lL+ h      ++++g+tpL++ a+ g++ +v+lLl +ga +
  KOO24853.1 658 DP--NGNTSLHVAVTNQDEGLVRLLVTHraelseQNRQGQTPLIIGAETGQEGVVELLLHSGAPL 720
                 34..69***********9999******9988877779**********************889865 PP

  == domain 6  score: 49.1 bits;  conditional E-value: 3.1e-16
       Ank_2   2 hlAakngnlelvklLl..egadpn...kngktaLhyAakngnlei.vklLleh......adndgrtpLhyAarsghleivklLlekgad 78 
                   A +ng+l+++++Ll  + +d+n   k g + Lh+Aa+ g+ e+ v +Ll+       ++ +g+tpLh+A++ gh  +v+ L+++ga+
  KOO24853.1 732 ERALENGHLKVLQILLqqSIVDVNgitKRGSSLLHLAAELGD-EMrVTFLLSMsaqvdvLNPNGETPLHWACSLGHVAAVRALVQYGAN 819
                 568889*9********977799999744*************8.777*****934566677799*********99**********99997 PP

  == domain 7  score: 48.1 bits;  conditional E-value: 6.6e-16
       Ank_2   1 LhlAakngnlelvklLl.egadpn..k.ngktaLhyAakngnleivklLleh.ad......ndgrtpLhyAars.ghleivklLle 74 
                 LhlAa+ g+   v +Ll  +a ++  + ng+t+Lh+A++ g++ +v++L+++ a+       +g tpLh+A+ s g++ ++ lL++
  KOO24853.1 765 LHLAAELGDEMRVTFLLsMSAQVDvlNpNGETPLHWACSLGHVAAVRALVQYgANtmlhekVQGLTPLHAACGSrGNPAVLALLIQ 850
                 8*****9977789999875555555446**********************9884445567888*********99999888888884 PP

  == domain 8  score: 22.0 bits;  conditional E-value: 9.4e-08
       Ank_2   1 LhlAakn.gnlelvklLlegadpn......k.......ngktaLhyAakng.nl.eivklLleh......adndgrtpLhyAa 61 
                 Lh A+ + gn+ ++ lL++ +++       +       n++t+Lh++ak   +  + v +Lleh      ++ +g+t+Lh+ a
  KOO24853.1 832 LHAACGSrGNPAVLALLIQRCEMMgwqnqpQkcnlldaNKNTPLHTSAKLArHAlKYVPILLEHganpslQNGKGQTVLHLLA 914
                 8999997799988888886655422222221234455799*********64133477******996666555779*****865 PP

  == domain 9  score: 10.6 bits;  conditional E-value: 0.00033
       Ank_2   12 lvklLl.egadpnkngktaLhyAakngnleivklLleh......adndgrtpL 57  
                  lv lL  ++++   +g+taLh+Aa +g++ ++  L+         ++dg +pL
  KOO24853.1  976 LVALLDaQETE---TGNTALHIAAFGGCVPLAVQLVGLcasvalPNKDGFSPL 1025
                  33333222222...557777777777755443333321233445556666666 PP

>> Ank_4  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.1   0.1         9   1.8e+04       6      22 ..     294     310 ..     293     313 .. 0.84
   2 !   22.6   0.1   5.7e-08   0.00011       1      46 [.     379     424 ..     379     428 .. 0.94
   3 !   14.9   0.0   1.5e-05     0.029      18      55 .]     440     476 ..     436     476 .. 0.93
   4 !   14.3   0.0   2.4e-05     0.047       5      48 ..     493     539 ..     489     543 .. 0.79
   5 !    9.5   0.0   0.00074       1.5      20      55 .]     545     579 ..     540     579 .. 0.85
   6 !   14.1   0.0   2.6e-05     0.052       3      55 .]     596     647 ..     595     647 .. 0.88
   7 !   33.5   0.0   2.2e-11   4.3e-08       2      55 .]     662     714 ..     661     714 .. 0.97
   8 !   16.0   0.0     7e-06     0.014      12      55 .]     705     747 ..     704     747 .. 0.94
   9 !   17.0   0.1   3.4e-06    0.0067       1      55 []     727     781 ..     727     781 .. 0.91
  10 !   28.9   0.1   6.1e-10   1.2e-06       2      55 .]     762     814 ..     761     814 .. 0.95
  11 !   33.7   0.1   1.9e-11   3.7e-08       3      55 .]     796     849 ..     794     849 .. 0.94
  12 !   14.4   0.1   2.2e-05     0.044       2      43 ..     829     879 ..     828     883 .. 0.83
  13 !   14.4   0.0   2.1e-05     0.043       2      42 ..     872     913 ..     871     917 .. 0.88
  14 !    7.7   0.0    0.0028       5.6      27      46 ..     980     999 ..     956    1006 .. 0.74
  15 ?   -4.1   0.0         9   1.8e+04      31      40 ..    1017    1026 ..    1012    1027 .. 0.80

  Alignments for each domain:
  == domain 1  score: -4.1 bits;  conditional E-value: 9
       Ank_4   6 hyaaisgrlelvrlLle 22 
                 h aa  g  +l+r++l+
  KOO24853.1 294 HEAADLGASQLLRYCLQ 310
                 77888999999999997 PP

  == domain 2  score: 22.6 bits;  conditional E-value: 5.7e-08
       Ank_4   1 eltaLhyaaisgrlelvrlLlekgadinaqdnrsGetalhiAakrg 46 
                 ++t+L  a +  +l +++lLl+kgad+na +++ + +++h A++ g
  KOO24853.1 379 GRTPLEVALSLDDLTNAKLLLSKGADVNAMASGGDAPLIHSACYAG 424
                 589***************************999999********98 PP

  == domain 3  score: 14.9 bits;  conditional E-value: 1.5e-05
       Ank_4  18 rlLlekgadinaqdnrsGetalhiAakrgnveilklLl 55 
                  lLle++a+++a  n++Ge+al+ A+ +g ++++ lLl
  KOO24853.1 440 SLLLEYKASVDAM-NKRGESALDVALFNGGPSVVGLLL 476
                 5899*********.***************999999887 PP

  == domain 4  score: 14.3 bits;  conditional E-value: 2.4e-05
       Ank_4   5 LhyaaisgrlelvrlLl..ek..gadinaqdnrsGetalhiAakrgnv 48 
                 Lh+a   gr ++++  l   +  g+++n q +++ +t+lhiAa++g+ 
  KOO24853.1 493 LHAASTLGRADVLETALgcLSviGVNLNQQ-DKNRDTPLHIAASKGDA 539
                 66666688888888888642347999****.**************985 PP

  == domain 5  score: 9.5 bits;  conditional E-value: 0.00074
       Ank_4  20 LlekgadinaqdnrsGetalhiAakrgnveilklLl 55 
                 Ll ++a+   q n++G t+l iA++ g++  + lLl
  KOO24853.1 545 LLKSKANTELQ-NEDGSTPLGIAVRQGDLPLTSLLL 579
                 56666666667.*******************99997 PP

  == domain 6  score: 14.1 bits;  conditional E-value: 2.6e-05
       Ank_4   3 taLhyaaisgrlelvrlLlekgadinaqdnrsGetalhiAakrgnveilklLl 55 
                 t+L  +a++   e+ + L++ gad+n+  ++ G+tal iA+ r  +e ++lL+
  KOO24853.1 596 TPLIVLAAEISNEVTKALVNAGADLNRA-DSVGRTALEIAVFRRELELAELLV 647
                 567777777788999************8.999***********9999999985 PP

  == domain 7  score: 33.5 bits;  conditional E-value: 2.2e-11
       Ank_4   2 ltaLhyaaisgrlelvrlLlekgadinaqdnrsGetalhiAakrgnveilklLl 55 
                 +t Lh a+  +++ lvrlL+ ++a++ +q nr+G+t+l+i+a +g+  +++lLl
  KOO24853.1 662 NTSLHVAVTNQDEGLVRLLVTHRAELSEQ-NRQGQTPLIIGAETGQEGVVELLL 714
                 799**************************.**********************98 PP

  == domain 8  score: 16.0 bits;  conditional E-value: 7e-06
       Ank_4  12 grlelvrlLlekgadinaqdnrsGetalhiAakrgnveilklLl 55 
                 g++ +v+lLl +ga ++ + ++s ++al +A+ +g++++l+ Ll
  KOO24853.1 705 GQEGVVELLLHSGAPLHLC-DASNRSALERALENGHLKVLQILL 747
                 67889*****99****999.*********************997 PP

  == domain 9  score: 17.0 bits;  conditional E-value: 3.4e-06
       Ank_4   1 eltaLhyaaisgrlelvrlLlekg.adinaqdnrsGetalhiAakrgnveilklLl 55 
                 +++aL +a + g+l+++++Ll++  +d+n    ++G ++lh Aa  g+  ++ +Ll
  KOO24853.1 727 NRSALERALENGHLKVLQILLQQSiVDVNGI-TKRGSSLLHLAAELGDEMRVTFLL 781
                 5899*****************99879****8.9***********988888888886 PP

  == domain 10  score: 28.9 bits;  conditional E-value: 6.1e-10
       Ank_4   2 ltaLhyaaisgrlelvrlLlekgadinaqdnrsGetalhiAakrgnveilklLl 55 
                 +++Lh aa+ g++  v +Ll+  a+++   n +Get+lh A++ g+v +++ L+
  KOO24853.1 762 SSLLHLAAELGDEMRVTFLLSMSAQVDVL-NPNGETPLHWACSLGHVAAVRALV 814
                 689*************************9.999******************996 PP

  == domain 11  score: 33.7 bits;  conditional E-value: 1.9e-11
       Ank_4   3 taLhyaaisgrlelvrlLlekgad..inaqdnrsGetalhiAa.krgnveilklLl 55 
                 t+Lh+a++ g++ +vr L+++ga+  +++    +G+t+lh A+ +rgn+ +l lL+
  KOO24853.1 796 TPLHWACSLGHVAAVRALVQYGANtmLHEK--VQGLTPLHAACgSRGNPAVLALLI 849
                 89**********************988887..89******************9997 PP

  == domain 12  score: 14.4 bits;  conditional E-value: 2.2e-05
       Ank_4   2 ltaLhyaai.sgrlelvrlLl...ek.gad.....inaqdnrsGetalhiAa 43 
                 lt+Lh+a+   g+  +++lL+   e  g++     +n   +++ +t+lh  a
  KOO24853.1 829 LTPLHAACGsRGNPAVLALLIqrcEMmGWQnqpqkCNLL-DANKNTPLHTSA 879
                 89*******9***********665334666887789998.*********766 PP

  == domain 13  score: 14.4 bits;  conditional E-value: 2.1e-05
       Ank_4   2 ltaLhyaai..sgrlelvrlLlekgadinaqdnrsGetalhiA 42 
                 +t+Lh  a+     l++v +Lle+ga++  q n+ G+t lh  
  KOO24853.1 872 NTPLHTSAKlaRHALKYVPILLEHGANPSLQ-NGKGQTVLHLL 913
                 57888888887888999**************.*********75 PP

  == domain 14  score: 7.7 bits;  conditional E-value: 0.0028
       Ank_4  27 inaqdnrsGetalhiAakrg 46 
                 ++aq  + G+talhiAa +g
  KOO24853.1 980 LDAQETETGNTALHIAAFGG 999
                 56776778*********987 PP

  == domain 15  score: -4.1 bits;  conditional E-value: 9
       Ank_4   31 dnrsGetalh 40  
                  +n++G+++l+
  KOO24853.1 1017 PNKDGFSPLD 1026
                  699*****96 PP

>> Ank_5  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.1   0.0     0.062   1.2e+02      22      42 ..     347     368 ..     342     371 .. 0.85
   2 !    9.2   0.1   0.00078       1.5      11      53 ..     374     416 ..     369     419 .. 0.89
   3 ?    3.5   0.0     0.048        96      35      56 .]     442     463 ..     440     463 .. 0.90
   4 ?   -0.5   0.0      0.84   1.7e+03      19      36 ..     492     509 ..     475     512 .. 0.87
   5 !   26.2   0.0   3.6e-09   7.2e-06       7      56 .]     517     566 ..     514     566 .. 0.93
   6 !   20.3   0.2   2.5e-07   0.00049       1      56 []     578     634 ..     578     634 .. 0.98
   7 !   25.4   0.0   6.5e-09   1.3e-05       8      55 ..     653     700 ..     646     700 .. 0.90
   8 !    8.8   0.0     0.001       2.1       9      56 .]     722     768 ..     712     768 .. 0.82
   9 !   29.3   0.1   3.8e-10   7.6e-07       6      53 ..     784     832 ..     780     833 .. 0.86
  10 ?    5.1   0.0     0.015        29      16      36 ..     828     849 ..     825     856 .. 0.84
  11 !   23.0   0.1   3.5e-08   7.1e-05       5      55 ..     860     912 ..     858     914 .. 0.93
  12 !   10.4   0.0   0.00032      0.63      12      54 ..     984    1026 ..     979    1026 .. 0.90

  Alignments for each domain:
  == domain 1  score: 3.1 bits;  conditional E-value: 0.062
       Ank_5  22 vAakygaadvvrlLl.argadl 42 
                  A  +++adv++++l +++a+l
  KOO24853.1 347 DALIHNRADVAEFILtKPPAAL 368
                 67889**********9999876 PP

  == domain 2  score: 9.2 bits;  conditional E-value: 0.00078
       Ank_5  11 rldgggntpLhvAakygaadvvrlLlargadlnltdsrGltal 53 
                 +ld  g tpL vA +   ++ ++lLl  gad n+  s G+ +l
  KOO24853.1 374 ALDDLGRTPLEVALSLDDLTNAKLLLSKGADVNAMASGGDAPL 416
                 5677888**************************9999999888 PP

  == domain 3  score: 3.5 bits;  conditional E-value: 0.048
       Ank_5  35 LlargadlnltdsrGltaldlA 56 
                 Ll++ a+ ++ ++rG++ald+A
  KOO24853.1 442 LLEYKASVDAMNKRGESALDVA 463
                 669999**************98 PP

  == domain 4  score: -0.5 bits;  conditional E-value: 0.84
       Ank_5  19 pLhvAakygaadvvrlLl 36 
                  Lh A+  g+adv++  l
  KOO24853.1 492 LLHAASTLGRADVLETAL 509
                 5999999******99877 PP

  == domain 5  score: 26.2 bits;  conditional E-value: 3.6e-09
       Ank_5   7 advnrldgggntpLhvAakygaadvvrlLlargadlnltdsrGltaldlA 56 
                 +++n +d+++ tpLh+Aa++g a +v  Ll+  a++ l++++G+t+l +A
  KOO24853.1 517 VNLNQQDKNRDTPLHIAASKGDAALVAPLLKSKANTELQNEDGSTPLGIA 566
                 78899999999***********************************9666 PP

  == domain 6  score: 20.3 bits;  conditional E-value: 2.5e-07
       Ank_5   1 Llehg.padvnrldgggntpLhvAakygaadvvrlLlargadlnltdsrGltaldlA 56 
                 Ll++g +++  + +g  +tpL+v a   + +v + L++ gadln  ds G+tal++A
  KOO24853.1 578 LLDAGaDRNAEWIRGVDVTPLIVLAAEISNEVTKALVNAGADLNRADSVGRTALEIA 634
                 89******************************************************9 PP

  == domain 7  score: 25.4 bits;  conditional E-value: 6.5e-09
       Ank_5   8 dvnrldgggntpLhvAakygaadvvrlLlargadlnltdsrGltaldl 55 
                  + r+d++gnt LhvA+ ++   +vrlL+ ++a l  ++ +G+t+l +
  KOO24853.1 653 PTTRKDPNGNTSLHVAVTNQDEGLVRLLVTHRAELSEQNRQGQTPLII 700
                 56799****************************************976 PP

  == domain 8  score: 8.8 bits;  conditional E-value: 0.001
       Ank_5   9 vnrldgggntpLhvAakygaadvvrlLl.argadlnltdsrGltaldlA 56 
                 +++  ++  ++L  A ++g++ v+++Ll    +d n  ++rG+++l+lA
  KOO24853.1 722 LCDASNR--SALERALENGHLKVLQILLqQSIVDVNGITKRGSSLLHLA 768
                 3333333..9************************************998 PP

  == domain 9  score: 29.3 bits;  conditional E-value: 3.8e-10
       Ank_5   6 padvnrldgggntpLhvAakygaadvvrlLlargadlnltds.rGltal 53 
                 +a+v+ l+++g+tpLh+A++ g+   vr L+ +ga+++l ++ +Glt+l
  KOO24853.1 784 SAQVDVLNPNGETPLHWACSLGHVAAVRALVQYGANTMLHEKvQGLTPL 832
                 489999999******************************9973447776 PP

  == domain 10  score: 5.1 bits;  conditional E-value: 0.015
       Ank_5  16 gntpLhvAak.ygaadvvrlLl 36 
                 g tpLh A+  +g++ v+ lL+
  KOO24853.1 828 GLTPLHAACGsRGNPAVLALLI 849
                 78********999988888777 PP

  == domain 11  score: 23.0 bits;  conditional E-value: 3.5e-08
       Ank_5   5 gpadvnrldgggntpLhvAak..ygaadvvrlLlargadlnltdsrGltaldl 55 
                 +p  +n ld ++ntpLh++ak  ++a+  v++Ll++ga++ l+++ G+t+l+l
  KOO24853.1 860 QPQKCNLLDANKNTPLHTSAKlaRHALKYVPILLEHGANPSLQNGKGQTVLHL 912
                 577799****************9999************************987 PP

  == domain 12  score: 10.4 bits;  conditional E-value: 0.00032
       Ank_5   12 ldgggntpLhvAakygaadvvrlLlargadlnltdsrGltald 54  
                  + + gnt+Lh+Aa +g+ +++  L+   a+  l +++G ++ld
  KOO24853.1  984 ETETGNTALHIAAFGGCVPLAVQLVGLCASVALPNKDGFSPLD 1026
                  567899*******************999999999999999998 PP

>> Ank  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.0   0.1     0.009        18       2      29 ..     379     407 ..     378     409 .. 0.80
   2 ?   -2.4   0.0       4.1   8.1e+03      19      31 ..     440     453 ..     417     454 .. 0.66
   3 ?    4.6   0.0     0.025        51       2      23 ..     456     478 ..     455     482 .. 0.86
   4 ?    5.6   0.1     0.012        24       6      32 .]     493     524 ..     492     524 .. 0.82
   5 !   12.5   0.1   7.9e-05      0.16       3      31 ..     527     556 ..     525     557 .. 0.85
   6 !   11.6   0.0   0.00015       0.3       1      29 [.     558     587 ..     558     588 .. 0.94
   7 !    9.5   0.1   0.00072       1.4       3      31 ..     595     624 ..     594     625 .. 0.87
   8 ?    1.8   0.0      0.19   3.8e+02       2      28 ..     627     654 ..     627     658 .. 0.83
   9 !   14.5   0.0   1.8e-05     0.035       1      31 [.     660     691 ..     660     692 .. 0.90
  10 !   10.5   0.1   0.00034      0.67       2      31 ..     694     724 ..     693     725 .. 0.81
  11 ?    4.8   0.3     0.021        42       5      28 ..     719     755 ..     718     758 .. 0.74
  12 ?    5.6   0.0     0.012        24       2      30 ..     761     790 ..     760     792 .. 0.77
  13 !   22.1   0.1   7.3e-08   0.00015       1      30 [.     793     823 ..     793     825 .. 0.91
  14 !   14.5   0.1   1.8e-05     0.037       2      24 ..     828     851 ..     827     856 .. 0.90
  15 !    9.1   0.2   0.00093       1.9       3      31 ..     872     903 ..     870     903 .. 0.71
  16 ?    2.3   0.0      0.13   2.6e+02       2       9 ..     906     926 ..     905     976 .. 0.73
  17 !   11.3   0.1   0.00019      0.39       2      26 ..     988    1013 ..     987    1019 .. 0.65
  18 ?   -3.7   0.0         9   1.8e+04       1       6 [.    1020    1025 ..    1020    1031 .. 0.88

  Alignments for each domain:
  == domain 1  score: 6.0 bits;  conditional E-value: 0.009
                 SBBHHHHHHHHTTHHHHHHHH.TTTSTTC CS
         Ank   2 GnTPLHlAatngkkriiklLL.hGAnlna 29 
                 G+TPL +A + +++  +klLL +GA++na
  KOO24853.1 379 GRTPLEVALSLDDLTNAKLLLsKGADVNA 407
                 7788888777776667799**88*****8 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 4.1
                 HHHH.TTTSTTCBT CS
         Ank  19 klLL.hGAnlnald 31 
                 +lLL + A+++a +
  KOO24853.1 440 SLLLeYKASVDAMN 453
                 67786678888876 PP

  == domain 3  score: 4.6 bits;  conditional E-value: 0.025
                 SBBHHHHHHHHTTHHHHHHHH.T CS
         Ank   2 GnTPLHlAatngkkriiklLL.h 23 
                 G ++L +A  ng+++++ lLL +
  KOO24853.1 456 GESALDVALFNGGPSVVGLLLrN 478
                 899****99************53 PP

  == domain 4  score: 5.6 bits;  conditional E-value: 0.012
                 HHHHHHHTTHHHHH.HH.....HTTTSTTCBTT CS
         Ank   6 LHlAatngkkriik.lL.....LhGAnlnaldn 32 
                 LH A+t g +++++ +L     + G nln++d+
  KOO24853.1 493 LHAASTLGRADVLEtALgclsvI-GVNLNQQDK 524
                 9*******999998678774544.9******95 PP

  == domain 5  score: 12.5 bits;  conditional E-value: 7.9e-05
                 BBHHHHHHHHTTHHHHHHHH.TTTSTTCBT CS
         Ank   3 nTPLHlAatngkkriiklLL.hGAnlnald 31 
                 +TPLH+Aa+ g++  +  LL + An  +++
  KOO24853.1 527 DTPLHIAASKGDAALVAPLLkSKANTELQN 556
                 7*******99*9999999995669988776 PP

  == domain 6  score: 11.6 bits;  conditional E-value: 0.00015
                 TSBBHHHHHHHHTTHHHHHHHH.TTTSTTC CS
         Ank   1 dGnTPLHlAatngkkriiklLL.hGAnlna 29 
                 dG TPL +A++ g++  ++lLL  GA+ na
  KOO24853.1 558 DGSTPLGIAVRQGDLPLTSLLLdAGADRNA 587
                 8*********************66***998 PP

  == domain 7  score: 9.5 bits;  conditional E-value: 0.00072
                 BBHHH.HHH..HHTTHHHHHHHH.TTTSTTCBT CS
         Ank   3 nTPLH.lAa..tngkkriiklLL.hGAnlnald 31 
                  TPL  lAa  +n    ++k+L+  GA+ln  d
  KOO24853.1 595 VTPLIvLAAeiSNE---VTKALVnAGADLNRAD 624
                 59***999999888...******77*****876 PP

  == domain 8  score: 1.8 bits;  conditional E-value: 0.19
                 SBBHHHHHHHHTTHHHHHHHH.TTTSTT CS
         Ank   2 GnTPLHlAatngkkriiklLL.hGAnln 28 
                 G+T+L +A+ +  ++ ++lL+ +GA ++
  KOO24853.1 627 GRTALEIAVFRRELELAELLVrKGAKPT 654
                 89*****997777889999998899885 PP

  == domain 9  score: 14.5 bits;  conditional E-value: 1.8e-05
                 TSBBHHHHHHHHTTHHHHHHHH.TTTSTTCBT CS
         Ank   1 dGnTPLHlAatngkkriiklLL.hGAnlnald 31 
                 +GnT LH+A+tn ++  ++lL+ h+A+l  ++
  KOO24853.1 660 NGNTSLHVAVTNQDEGLVRLLVtHRAELSEQN 691
                 7*********888888**********998766 PP

  == domain 10  score: 10.5 bits;  conditional E-value: 0.00034
                 SBBHHHHHHHHTTHHHHHHHH.TTTSTTCBT CS
         Ank   2 GnTPLHlAatngkkriiklLL.hGAnlnald 31 
                 G TPL + a  g++ +++lLL +GA l++ d
  KOO24853.1 694 GQTPLIIGAETGQEGVVELLLhSGAPLHLCD 724
                 99*******555555******559*988877 PP

  == domain 11  score: 4.8 bits;  conditional E-value: 0.021
                 HHHHHH............HHTTHHHHHHHH.TT.TSTT CS
         Ank   5 PLHlAa............tngkkriiklLL.hG.Anln 28 
                 PLHl +             ng++ +++ LL ++  ++n
  KOO24853.1 719 PLHL-CdasnrsaleralENGHLKVLQILLqQSiVDVN 755
                 9999.44445555666679999********66766766 PP

  == domain 12  score: 5.6 bits;  conditional E-value: 0.012
                 SBBHHHHHHHHTTHHHHHHHH.TTTSTTCB CS
         Ank   2 GnTPLHlAatngkkriiklLL.hGAnlnal 30 
                 G + LHlAa  g++  + +LL  +A ++ l
  KOO24853.1 761 GSSLLHLAAELGDEMRVTFLLsMSAQVDVL 790
                 7789*****888877999999446766655 PP

  == domain 13  score: 22.1 bits;  conditional E-value: 7.3e-08
                 TSBBHHHHHHHHTTHHHHHHHH.TTTSTTCB CS
         Ank   1 dGnTPLHlAatngkkriiklLL.hGAnlnal 30 
                 +G TPLH+A++ g++  +++L+ +GAn  ++
  KOO24853.1 793 NGETPLHWACSLGHVAAVRALVqYGANTMLH 823
                 7*********************77***8766 PP

  == domain 14  score: 14.5 bits;  conditional E-value: 1.8e-05
                 SBBHHHHHH.HHTTHHHHHHHHTT CS
         Ank   2 GnTPLHlAa.tngkkriiklLLhG 24 
                 G TPLH A+ ++g++ ++ lL+++
  KOO24853.1 828 GLTPLHAACgSRGNPAVLALLIQR 851
                 89********99*********965 PP

  == domain 15  score: 9.1 bits;  conditional E-value: 0.00093
                 BBHHHHHH.....HHTTHHHHHHHH.TTTSTTCBT CS
         Ank   3 nTPLHlAa.....tngkkriiklLL.hGAnlnald 31 
                 nTPLH  a         +  +  LL hGAn+ +++
  KOO24853.1 872 NTPLHTSAklarhA---LKYVPILLeHGANPSLQN 903
                 9****877543222...3366669*******9887 PP

  == domain 16  score: 2.3 bits;  conditional E-value: 0.13
                 SBBHHHH.............H CS
         Ank   2 GnTPLHl.............A 9  
                 G T+LHl             A
  KOO24853.1 906 GQTVLHLlaeravremqeisA 926
                 99****855554444444443 PP

  == domain 17  score: 11.3 bits;  conditional E-value: 0.00019
                  SBBHHHHHHHHTT.HHHHHHHHTT..TS CS
         Ank    2 GnTPLHlAatngk.kriiklLLhG..An 26  
                  GnT+LH+Aa +g  +  ++ L+ G  A+
  KOO24853.1  988 GNTALHIAAFGGCvPLAVQ-LV-GlcAS 1013
                  9********7773544444.55.44455 PP

  == domain 18  score: -3.7 bits;  conditional E-value: 9
                  TSBBHH CS
         Ank    1 dGnTPL 6   
                  dG++PL
  KOO24853.1 1020 DGFSPL 1025
                  8****9 PP

>> Ank_3  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.0       1.8   3.5e+03       7      23 ..     294     310 ..     293     314 .. 0.93
   2 ?   -1.7   0.0       3.7   7.4e+03       9      28 ..     348     367 ..     348     370 .. 0.80
   3 !   10.2   0.0   0.00048      0.95       2      31 .]     379     407 ..     378     407 .. 0.93
   4 ?   -1.9   0.0       4.4   8.7e+03       6      30 ..     417     450 ..     415     451 .. 0.56
   5 ?    5.9   0.0     0.012        25       2      25 ..     456     479 ..     455     482 .. 0.91
   6 ?   -1.4   0.0       2.9   5.7e+03       2      20 ..     489     507 ..     488     520 .. 0.79
   7 !    6.7   0.0    0.0069        14       3      18 ..     527     542 ..     525     551 .. 0.80
   8 !   11.8   0.0   0.00014      0.29       1      31 []     558     587 ..     558     587 .. 0.94
   9 ?    3.3   0.0     0.089   1.8e+02       4      30 ..     596     621 ..     594     622 .. 0.91
  10 ?    5.5   0.0     0.017        34       2      29 ..     627     653 ..     626     655 .. 0.93
  11 !   10.6   0.0   0.00036      0.72       1      27 [.     660     685 ..     660     689 .. 0.89
  12 ?    2.9   0.0      0.12   2.3e+02       2      30 ..     694     721 ..     693     722 .. 0.89
  13 !    9.9   0.0   0.00063       1.3       2      30 ..     727     755 ..     726     756 .. 0.94
  14 !    7.2   0.0    0.0046       9.1       2      29 ..     761     787 ..     760     789 .. 0.86
  15 !   24.2   0.0   1.4e-08   2.7e-05       1      28 [.     793     819 ..     793     820 .. 0.96
  16 !    6.9   0.0    0.0056        11       2      23 ..     828     850 ..     827     853 .. 0.76
  17 !    8.8   0.0    0.0014       2.8       1      30 [.     870     900 ..     870     901 .. 0.88
  18 ?    1.7   0.0      0.29   5.7e+02       2      18 ..     906     921 ..     905     934 .. 0.77
  19 !    6.5   0.0    0.0079        16       2      21 ..     988    1007 ..     987    1014 .. 0.81

  Alignments for each domain:
  == domain 1  score: -0.7 bits;  conditional E-value: 1.8
       Ank_3   7 hlAarsgnleivkfLle 23 
                 h+Aa  g   +++++l+
  KOO24853.1 294 HEAADLGASQLLRYCLQ 310
                 99*************98 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 3.7
       Ank_3   9 AarsgnleivkfLlenkgad 28 
                 A+ +++ ++++f+l ++ a 
  KOO24853.1 348 ALIHNRADVAEFILTKPPAA 367
                 678999999***99977665 PP

  == domain 3  score: 10.2 bits;  conditional E-value: 0.00048
       Ank_3   2 GetpLhlAarsgnleivkfLlenkgadvna 31 
                 G+tpL +A++ ++l+ +k+Ll  kgadvna
  KOO24853.1 379 GRTPLEVALSLDDLTNAKLLLS-KGADVNA 407
                 9*************66******.9****96 PP

  == domain 4  score: -1.9 bits;  conditional E-value: 4.4
       Ank_3   6 LhlAarsgnl......ei....vkfLlenkgadvn 30 
                 +h A+ +g l      ++    + +Lle + a v+
  KOO24853.1 417 IHSACYAGALhdprksDLtiqkMSLLLE-YKASVD 450
                 5777777766443333113355777888.777765 PP

  == domain 5  score: 5.9 bits;  conditional E-value: 0.012
       Ank_3   2 GetpLhlAarsgnleivkfLlenk 25 
                 Ge++L +A+ +g +++v +Ll+n+
  KOO24853.1 456 GESALDVALFNGGPSVVGLLLRNH 479
                 9*********************64 PP

  == domain 6  score: -1.4 bits;  conditional E-value: 2.9
       Ank_3   2 GetpLhlAarsgnleivkf 20 
                 G ++Lh A   g+ ++++ 
  KOO24853.1 489 GGCLLHAASTLGRADVLET 507
                 66899***99999998765 PP

  == domain 7  score: 6.7 bits;  conditional E-value: 0.0069
       Ank_3   3 etpLhlAarsgnleiv 18 
                  tpLh+Aa+ g+ ++v
  KOO24853.1 527 DTPLHIAASKGDAALV 542
                 6*********998754 PP

  == domain 8  score: 11.8 bits;  conditional E-value: 0.00014
       Ank_3   1 nGetpLhlAarsgnleivkfLlenkgadvna 31 
                 +G tpL +A+r+g+l++  +Ll+  gad na
  KOO24853.1 558 DGSTPLGIAVRQGDLPLTSLLLD-AGADRNA 587
                 699********************.8***885 PP

  == domain 9  score: 3.3 bits;  conditional E-value: 0.089
       Ank_3   4 tpLhlAarsgnleivkfLlenkgadvn 30 
                 tpL + a  ++ e+ k+L++  gad+n
  KOO24853.1 596 TPLIVLAAEISNEVTKALVN-AGADLN 621
                 89999999999999******.9***99 PP

  == domain 10  score: 5.5 bits;  conditional E-value: 0.017
       Ank_3   2 GetpLhlAarsgnleivkfLlenkgadv 29 
                 G+t+L +A+    le++++L++ kga +
  KOO24853.1 627 GRTALEIAVFRRELELAELLVR-KGAKP 653
                 9*********************.89976 PP

  == domain 11  score: 10.6 bits;  conditional E-value: 0.00036
       Ank_3   1 nGetpLhlAarsgnleivkfLlenkga 27 
                 nG+t Lh+A+ +++  +v++L+  + a
  KOO24853.1 660 NGNTSLHVAVTNQDEGLVRLLVT-HRA 685
                 7********************99.565 PP

  == domain 12  score: 2.9 bits;  conditional E-value: 0.12
       Ank_3   2 GetpLhlAarsgnleivkfLlenkgadvn 30 
                 G+tpL + a+ g   +v++Ll   ga+++
  KOO24853.1 694 GQTPLIIGAETGQEGVVELLLH-SGAPLH 721
                 9**************9999999.788875 PP

  == domain 13  score: 9.9 bits;  conditional E-value: 0.00063
       Ank_3   2 GetpLhlAarsgnleivkfLlenkgadvn 30 
                 ++++L +A+++g+l++++ Ll++  +dvn
  KOO24853.1 727 NRSALERALENGHLKVLQILLQQSIVDVN 755
                 689*******************9999998 PP

  == domain 14  score: 7.2 bits;  conditional E-value: 0.0046
       Ank_3   2 GetpLhlAarsgnleivkfLlenkgadv 29 
                 G ++LhlAa+ g+  +v fLl  + a v
  KOO24853.1 761 GSSLLHLAAELGDEMRVTFLLS-MSAQV 787
                 889***********99****99.77665 PP

  == domain 15  score: 24.2 bits;  conditional E-value: 1.4e-08
       Ank_3   1 nGetpLhlAarsgnleivkfLlenkgad 28 
                 nGetpLh+A++ g+++ v++L++ +ga+
  KOO24853.1 793 NGETPLHWACSLGHVAAVRALVQ-YGAN 819
                 7**********************.9997 PP

  == domain 16  score: 6.9 bits;  conditional E-value: 0.0056
       Ank_3   2 GetpLhlAarsgnle.ivkfLle 23 
                 G tpLh A+ s   + ++ +L++
  KOO24853.1 828 GLTPLHAACGSRGNPaVLALLIQ 850
                 89*******99988735555554 PP

  == domain 17  score: 8.8 bits;  conditional E-value: 0.0014
       Ank_3   1 nGetpLhlAarsgnle..ivkfLlenkgadvn 30 
                 n +tpLh+ a+ ++++  +v  Lle +ga++ 
  KOO24853.1 870 NKNTPLHTSAKLARHAlkYVPILLE-HGANPS 900
                 579************7457******.8*9985 PP

  == domain 18  score: 1.7 bits;  conditional E-value: 0.29
       Ank_3   2 GetpLhlAarsgnleiv 18 
                 G+t Lhl a+ +  e +
  KOO24853.1 906 GQTVLHLLAERAVRE-M 921
                 9******99988777.4 PP

  == domain 19  score: 6.5 bits;  conditional E-value: 0.0079
       Ank_3    2 GetpLhlAarsgnleivkfL 21  
                  G+t+Lh+Aa  g+++++  L
  KOO24853.1  988 GNTALHIAAFGGCVPLAVQL 1007
                  9********99998865554 PP

>> FYVE  FYVE zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.3  14.9   9.8e-17     2e-13       2      66 ..    1052    1119 ..    1051    1121 .. 0.91

  Alignments for each domain:
  == domain 1  score: 50.3 bits;  conditional E-value: 9.8e-17
                  ---...--SB-TTT--B--SS....S--EE-TTT--EE-STTS-EEE.EEGGGTEEEEEEE-HHHHHHH CS
        FYVE    2 kwkddsevkkCeiCakkFsll....rrrhhCrlCGkvvCekCssklvallekeaeeksvrvCkeClael 66  
                  +w +d+ ++ C+iC+ +Fs +     r+hhCr+CG++vC++C+ k++a + k  ++++ rvC  C + l
  KOO24853.1 1052 SWTPDKMCNACQICKLPFSKTdpkrARKHHCRHCGRCVCSECTPKKMAIP-KFGSNAQERVCLVCERVL 1119
                  7*****************87556669*********************777.9*************9876 PP

>> BTB  BTB/POZ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.4   0.0   1.7e-05     0.034       5      79 ..     159     242 ..     156     271 .. 0.73

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 1.7e-05
                 HHHTTTS-EEEEETTTEEEEE-HHHHHHH..-HHHHHHHTST.....TTTTCCCE........EEE.ETTSGHHHHHHHHHHHHHSEEEC- CS
         BTB   5 resgelcDvtlvvgdgkefkahkavLaar..SpyFkalftsk.....eieessvs........eie.lddvepeafealLefiYtgeleit 79 
                 + sg   D+ + +  +++++ah+++L ar  +p+ +al  +             +        ++e l   + ++++alL+++Yt+++e +
  KOO24853.1 159 LTSGRHADLSFELP-ARKLRAHRCILEARcgAPFVQALEAGAlgtatL------EagllrvtcTVEvLGAPSGQSLAALLKYMYTEKFEPE 242
                 567888999999*9.7**********9983346677776666666540......33344554533304556668************99876 PP

>> zf-piccolo  Piccolo Zn-finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.4  12.4    0.0024       4.8       2      54 ..    1061    1116 ..    1057    1119 .. 0.76

  Alignments for each domain:
  == domain 1  score: 7.4 bits;  conditional E-value: 0.0024
  zf-piccolo    2 lCplCktelnvgskeppnyntCteCkkqvCnlCGFnpt..phlte.kkeWlclnCQ 54  
                   C +Ck   + +  +++  ++C +C + vC+ C    +  p+  +  +e  cl C 
  KOO24853.1 1061 ACQICKLPFSKTDPKRARKHHCRHCGRCVCSECTPKKMaiPKFGSnAQERVCLVCE 1116
                  4777777777777888999**************96543337776668999999995 PP

>> DHHC  DHHC palmitoyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.4   7.9    0.0094        19      14      30 ..    1074    1090 ..    1054    1092 .. 0.75

  Alignments for each domain:
  == domain 1  score: 5.4 bits;  conditional E-value: 0.0094
        DHHC   14 ykpprskHcrvCnrcvl 30  
                  +k +r +Hcr+C+rcv+
  KOO24853.1 1074 PKRARKHHCRHCGRCVC 1090
                  578999**********7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1131 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       556  (0.0310112); expected 358.6 (0.02)
Passed bias filter:                      270  (0.0150594); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                        13  (0.000725082); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.76u 0.28s 00:00:01.04 Elapsed: 00:00:00.42
# Mc/sec: 8088.48
//
Query:       KOO24854.1  [L=464]
Description: hypothetical protein Ctob_006602 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (464 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2676  (0.149255); expected 358.6 (0.02)
Passed bias filter:                      491  (0.0273858); expected 358.6 (0.02)
Passed Vit filter:                       155  (0.00864521); expected 17.9 (0.001)
Passed Fwd filter:                        50  (0.00278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 1.25u 0.37s 00:00:01.62 Elapsed: 00:00:00.55
# Mc/sec: 2525.48
//
Query:       KOO24855.1  [L=299]
Description: hypothetical protein Ctob_006600 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
     0.0018   18.6   0.0     0.0028   17.9   0.0    1.2  1  VWA       von Willebrand factor type A domain
  ------ inclusion threshold ------
       0.11   11.9   0.0       0.26   10.7   0.0    1.6  2  VWA_CoxE  VWA domain containing CoxE-like protein


Domain annotation for each model (and alignments):
>> VWA  von Willebrand factor type A domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.9   0.0   3.2e-07    0.0028      68     132 ..      82     149 ..      74     165 .. 0.86

  Alignments for each domain:
  == domain 1  score: 17.9 bits;  conditional E-value: 3.2e-07
                 HHTG.SGGGGSSC-HHHHHHHHHHHHHHHHGTSST.TSEEEEEEEESS--CS.SHTHHHHHHHHGCTE CS
         VWA  68 lnnl.kysgggttntgkalkyaleklfkssagaRe.nakkviilltdGksnd.gdpkeaaneakeqgi 132
                 ++++ k+s+ggtt + + +++ ++ +  s+++ R+ + k v++l tdG +nd ++ + a++e+++  +
  KOO24855.1  82 IKAAmKTSPGGTTPLTEHVQFITSLIAPSAQHLRTqGQKAVVVLATDGLPNDpNSFLHALQELQRLPV 149
                 55544899****************999999999998999999999*******7799999999987655 PP

>> VWA_CoxE  VWA domain containing CoxE-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.0      0.29   2.6e+03     173     192 ..      38      57 ..      32      82 .. 0.65
   2 ?   10.7   0.0   2.9e-05      0.26     143     189 ..     113     157 ..      78     185 .. 0.70

  Alignments for each domain:
  == domain 1  score: -2.5 bits;  conditional E-value: 0.29
    VWA_CoxE 173 larlvrrarrlvwlnplsda 192
                 +a+   +a ++++lnp +  
  KOO24855.1  38 VASALGAATHFHLLNPSPIG 57 
                 56666789999999998644 PP

  == domain 2  score: 10.7 bits;  conditional E-value: 2.9e-05
    VWA_CoxE 143 vtrpaLsrravvvlvsDglergdreellaelarlvrrarrlvwlnpl 189
                 + r++ +++avvvl +Dgl  ++ +  l++l++l+r  + lv+    
  KOO24855.1 113 HLRTQ-GQKAVVVLATDGLPNDP-NSFLHALQELQRLPVWLVVRLCT 157
                 33344.79**********87665.66778999999887777765555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (299 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       394  (0.0219756); expected 358.6 (0.02)
Passed bias filter:                      370  (0.020637); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.47u 0.23s 00:00:00.70 Elapsed: 00:00:00.41
# Mc/sec: 2163.62
//
Query:       KOO24856.1  [L=695]
Description: hypothetical protein Ctob_006596 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
        1.8    9.0   7.4       0.63   10.5   2.6    2.4  2  DUF5455   Family of unknown function (DUF5455)


Domain annotation for each model (and alignments):
>> DUF5455  Family of unknown function (DUF5455)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.3   0.2     0.078   1.4e+03      21      41 ..      21      41 ..      11      50 .. 0.69
   2 ?   10.5   2.6   3.5e-05      0.63      20      87 ..     460     526 ..     443     531 .. 0.74

  Alignments for each domain:
  == domain 1  score: -0.3 bits;  conditional E-value: 0.078
     DUF5455 21 fltkklAvaivalgliialiv 41
                 l  +lA  +++l li++l +
  KOO24856.1 21 KLNMRLASVAIFLRLILSLWI 41
                455677777777777777644 PP

  == domain 2  score: 10.5 bits;  conditional E-value: 3.5e-05
     DUF5455  20 tfltkklAvaivalgliialivgllvvllaalsglssiaetlpselsqgislvvPsnaaaclsailta 87 
                 + +  +++va+ a ++ + l+ ++l+++ ++l+g ++++e+lp +   + ++v+++ ++a l a + +
  KOO24856.1 460 DAVEVGVGVAVGAQTV-ALLLPTFLSIVKGLLKGAEVLNESLPWVRFPAFQMVISNSLIAALVAAIMS 526
                 5555555544433333.23555899*********************************9999876654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (695 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       563  (0.0314016); expected 358.6 (0.02)
Passed bias filter:                      327  (0.0182386); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.57u 0.27s 00:00:00.84 Elapsed: 00:00:00.44
# Mc/sec: 4754.44
//
Query:       KOO24857.1  [L=635]
Description: glucuronokinase 1-like protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.8e-06   26.6   0.0    6.2e-06   26.0   0.0    1.2  1  NTP_transferase  Nucleotidyl transferase
    9.6e-06   25.9   0.0    2.1e-05   24.8   0.0    1.5  1  GHMP_kinases_C   GHMP kinases C terminal
     0.0001   22.4   0.0    0.00022   21.4   0.0    1.6  1  GHMP_kinases_N   GHMP kinases N terminal domain


Domain annotation for each model (and alignments):
>> NTP_transferase  Nucleotidyl transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.0   0.0     1e-09   6.2e-06      21     201 ..      49     237 ..      46     259 .. 0.70

  Alignments for each domain:
  == domain 1  score: 26.0 bits;  conditional E-value: 1e-09
                      SGGGSEETTET..ETTHHHHHHHHH.TT-SEEEEEEETTTHHHHHHHHTTSGGGTSEEEEEEESS--..BGGHHHHHTHHHHTTSSE....EEE CS
  NTP_transferase  21 akklvpvlgke..rliqatlsrlan.sgieeiivvltqehsflveeqlkegskfgvevlialepegk..gtAdAvalaaelledeks..delvl 107
                      +k l+pv +++  +++ + + ++ + + ++e  +v++  h+f + e +++++ f   ++i+        g  +A a  ++l++++k    + ++
       KOO24857.1  49 PKALLPVSDSSddTILGTWWREVKSrQLFTECFLVVN-AHQFKYFERWATANGFP-AENIINDGTTTheGRLGAAAD-LDLVKRRKGleGADAM 139
                      5556666666564555555555555567888666666.56666666677777688.445544433333344444333.344444444455689* PP

                      EETTEEEEST..THHHHHHHHHTHSSTTSEEEEEEESS-CTTSEEEEEC.TTSBEEEEECS-SSHSH.CSEECCSEEEEETTHHHHHHHCCHHH CS
  NTP_transferase 108 vLggDhlikd..ayeeavkkaiekaakgtvtfgivpveeateyGviead.eegrverfvEKPkeaka.selassGiYvfnsevllflakdleel 197
                      +++gD+l+++  +++ + ++++ ++ ++ v + +  +e+a+  G++e+d  + rv+ f EKP  +++ s +as   Y   s+ l+ l ++lee 
       KOO24857.1 140 IIAGDMLFSQgfDISGVQRFFRLRGGDVAVYYELAAEENAETRGIVEVDpMSARVTAFHEKPHPDTLtSRFASVVFYAVRSSTLELLPAFLEEE 233
                      **********888999999999999999*********************6666***********999788888888888888888886666665 PP

                      TTSS CS
  NTP_transferase 198 krge 201
                      ++++
       KOO24857.1 234 PETA 237
                      5544 PP

>> GHMP_kinases_C  GHMP kinases C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.8   0.0   3.5e-09   2.1e-05       4      77 ..     544     615 ..     542     622 .. 0.89

  Alignments for each domain:
  == domain 1  score: 24.8 bits;  conditional E-value: 3.5e-09
  GHMP_kinases_C   4 alergdlellgellnlsqrs.elkavvgilppeleellealselGalgaklsGaGgGptvfalfkdkdeaeqvar 77 
                     al+ +d+++lg+l+n + ++   ++  +++  +  +++  ++e+G   +k +G+  G++v+++++++++ ++v++
      KOO24857.1 544 ALLDKDWPTLGRLMNANFALrRQLYGDDCIGQAALAMIAVAQEAG-VPVKFPGS--GGAVVGMCESDAQRQHVRE 615
                     7889***********99999*5559999*****************.********..********88887777765 PP

>> GHMP_kinases_N  GHMP kinases N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.4   0.0   3.6e-08   0.00022       3      49 ..     399     453 ..     397     468 .. 0.70

  Alignments for each domain:
  == domain 1  score: 21.4 bits;  conditional E-value: 3.6e-08
                     EEEESSHTTSSSCHHHHHHHHHHHHHHHHTTEH.HHH........HHHHHHHHHHH CS
  GHMP_kinases_N   3 vikseiPvgaGLGSSAAlavalvaAllallgls.lee........aklaleaerla 49 
                     + ++++P   GL++S+A+++a++ +l a+++l    +        + l++e  +l+
      KOO24857.1 399 RYTTNVPRQVGLAGSSAIITATLQCLMAFYSLTeA-DipkplqpsFVLSVEMDELF 453
                     56789*************************63321.12223444566666666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (635 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       294  (0.016398); expected 358.6 (0.02)
Passed bias filter:                      286  (0.0159518); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.57u 0.24s 00:00:00.81 Elapsed: 00:00:00.43
# Mc/sec: 4390.83
//
Query:       KOO24858.1  [L=730]
Description: hypothetical protein Ctob_003024 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
  ------ inclusion threshold ------
      0.015   14.2  14.3      0.037   12.9  14.3    1.7  1  Spc7             Spc7 kinetochore protein
      0.019   15.4   0.0      0.059   13.8   0.0    1.9  1  EF-hand_7        EF-hand domain pair
      0.022   14.3   0.0       0.42   10.3   0.0    2.6  2  EF-hand_1        EF hand
       0.13   12.4   2.9       0.32   11.1   2.9    1.6  1  GLYCAM-1         Glycosylation-dependent cell adhesion molecu
        0.3   11.1   5.8       0.41   10.7   4.9    1.6  1  rRNA_processing  rRNA processing
        1.1    9.3   5.8        2.3    8.3   0.0    4.0  4  CaM_bdg_C0       Calmodulin-binding domain C0 of NMDA recepto
        2.1    8.2  26.6          2    8.3  23.3    2.5  2  Apolipoprotein   Apolipoprotein A1/A4/E domain


Domain annotation for each model (and alignments):
>> Spc7  Spc7 kinetochore protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9  14.3   1.4e-05     0.037     152     280 ..     389     528 ..     373     546 .. 0.75

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 1.4e-05
        Spc7 152 eedkelLe.kqeeeldellpeleeekaeleeeleklqe..aaeelesidkeeLeelreelaelkaeieekkkelaelqeqleeleekie........el 239
                 +e ++ L  +  + ++++ +e++++  +l+ee++ +++  ++e l++ d  eLe++r el+++  ei++++k+la+ +    +l+++ +        +l
  KOO24858.1 389 KEASAILRgEITKDAHAMREEINAHTRKLREEVALERDavREELLNKPDGRELEAARAELEAARLEIAALRKQLAQHEVTHRTLAAAAStteyhlteQL 487
                 5555555523457789999******************954444478899****************************9999988887651111000134 PP

        Spc7 240 keqkseleeeiaeaervleeckgwsesevsrlkeevkalee 280
                 +   +e+ee++a+a+r  e++ ++++++  + +e+ + +++
  KOO24858.1 488 HVLAREIEERMAQARRDAEMRARVEDQQMAEATEKIRIIQQ 528
                 44456677777778888888888888887777777777766 PP

>> EF-hand_7  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.0   2.3e-05     0.059       8      67 ..      22      77 ..      16      80 .. 0.87

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 2.3e-05
   EF-hand_7  8 FkelDtdgdgyldkeellrllrkifqgagegsklsdeelellfkefDtdkdGvisfdEFl 67
                  +lD   +g++++e+ +r + +++    +g + ++ + + l++ fD+d++G i f E++
  KOO24858.1 22 LTMLDFQESGSVSREDWERGVAALH---APGLS-HEVSWKMLLRRFDLDSSGAIEFGEMH 77
                579****************777666...88888.889999****************9987 PP

>> EF-hand_1  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.9   0.0      0.16   4.1e+02       8      28 ..      24      44 ..      18      45 .. 0.83
   2 ?   10.3   0.0   0.00016      0.42       2      22 ..      56      76 ..      55      80 .. 0.89

  Alignments for each domain:
  == domain 1  score: 0.9 bits;  conditional E-value: 0.16
                HHTTTSSSEEEHHHHHHHHHH CS
   EF-hand_1  8 efDkDgdGkIdfeEfkellkk 28
                ++D   +G +++e++ + +++
  KOO24858.1 24 MLDFQESGSVSREDWERGVAA 44
                789999********9988765 PP

  == domain 2  score: 10.3 bits;  conditional E-value: 0.00016
                HHHHHHHHTTTSSSEEEHHHH CS
   EF-hand_1  2 lkeiFrefDkDgdGkIdfeEf 22
                +k + r fD D +G I+f E+
  KOO24858.1 56 WKMLLRRFDLDSSGAIEFGEM 76
                67889*************998 PP

>> GLYCAM-1  Glycosylation-dependent cell adhesion molecule 1 (GlyCAM-1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   2.9   0.00012      0.32      35     116 ..     423     499 ..     387     506 .. 0.70

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00012
    GLYCAM-1  35 kepsisreeLiskeenvisssrkpknqelklllsifkedslRnassrseetteltpsaattsegkLaklgheieknLektik 116
                  e    reeL  k      + r+++  + +l  +  + + lR   ++ e t +  + aa+t+e +L++  h + +++e+ + 
  KOO24858.1 423 LERDAVREELLNKP-----DGRELEAARAELEAARLEIAALRKQLAQHEVTHRTLAAAASTTEYHLTEQLHVLAREIEERMA 499
                 22333333333333.....45677777777777777888999999999999999999**************99999988775 PP

>> rRNA_processing  rRNA processing
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   4.9   0.00016      0.41      52     133 ..     475     553 ..     435     556 .. 0.59

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00016
  rRNA_processing  52 ekskneeeeskkskkeareeeek..........lkfkerkeivkerkeekreekleavqeklerikal...ekkkkerekrkkkLskkTkkGQP 132
                      + s++e                            +++er +++++  e + + + +++ e +e+i+++   + +++e  +  +kL+++ k GQP
       KOO24858.1 475 AASTTE----------------YhlteqlhvlaREIEERMAQARRDAEMRARVEDQQMAEATEKIRIIqqsKANHEELLHLVHKLQQRPKPGQP 552
                      223333................2333334444455556666666555555555555555555555544000556666667889*********** PP

  rRNA_processing 133 v 133
                      +
       KOO24858.1 553 L 553
                      7 PP

>> CaM_bdg_C0  Calmodulin-binding domain C0 of NMDA receptor NR1 subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.3   0.0    0.0009       2.3      11      26 ..     113     128 ..     110     130 .. 0.88
   2 ?    0.3   0.2       0.3   7.6e+02      19      26 ..     196     203 ..     195     204 .. 0.80
   3 ?   -0.7   0.0       0.6   1.5e+03      19      27 ..     230     238 ..     229     240 .. 0.81
   4 ?   -2.7   0.1       2.5   6.4e+03      13      20 ..     314     321 ..     314     321 .. 0.85

  Alignments for each domain:
  == domain 1  score: 8.3 bits;  conditional E-value: 0.0009
  CaM_bdg_C0  11 qKqlELArhAaDkWRg 26 
                 + +l L++ +++ WRg
  KOO24858.1 113 ETKLKLMKGTINQWRG 128
                 66999**********9 PP

  == domain 2  score: 0.3 bits;  conditional E-value: 0.3
  CaM_bdg_C0  19 hAaDkWRg 26 
                 ++ D+WR 
  KOO24858.1 196 KVFDRWRT 203
                 578****6 PP

  == domain 3  score: -0.7 bits;  conditional E-value: 0.6
  CaM_bdg_C0  19 hAaDkWRgn 27 
                 h +D WR  
  KOO24858.1 230 HIIDSWRTS 238
                 889****76 PP

  == domain 4  score: -2.7 bits;  conditional E-value: 2.5
  CaM_bdg_C0  13 qlELArhA 20 
                 +++L+r++
  KOO24858.1 314 RKQLMRKV 321
                 799***86 PP

>> Apolipoprotein  Apolipoprotein A1/A4/E domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.5   0.1      0.39   9.9e+02     119     152 ..     295     328 ..     261     334 .. 0.78
   2 ?    8.3  23.3   0.00078         2      46     165 ..     381     507 ..     370     546 .. 0.46

  Alignments for each domain:
  == domain 1  score: -0.5 bits;  conditional E-value: 0.39
                     HCHHHHHHHHHHHHHHHHHHH-----..-----S CS
  Apolipoprotein 119 lapyveelrqklaerleelkeslaphaeeveerl 152
                     +++ +++ r+++aer   l+++l  +++ +++++
      KOO24858.1 295 FGAWRDSSRAQIAEREAVLRKQLMRKVKLFGAQV 328
                     6666777777777777777777777777666665 PP

  == domain 2  score: 8.3 bits;  conditional E-value: 0.00078
                     HHHHHHHCCCCHHHHHHCCCHHHHHHHHHCCHHHHHHHHHHHHCHHCCHHCHCCHCHHHHHHHHHH.HHHHHHHHCHHHHHHHH......HHHHH CS
  Apolipoprotein  46 leevrarlepyrdevqeqlgqnleelrqrlapyteelrerlaadaeelqeqlavyaeelrerlerh.vealkarlapyveelrq......klaer 133
                     le + +++++  + ++ ++++ + ++r++++++t++lre +a++ ++++e l  + ++ + +++r+ +ea +  +a+++ +l q       la+ 
      KOO24858.1 381 LEVLGDQVKEASAILRGEITKDAHAMREEINAHTRKLREEVALERDAVREELLNKPDGRELEAARAeLEAARLEIAALRKQLAQhevthrTLAAA 475
                     45555566666666666666666666666666666666666666666666666655554433333335555555555555555421111122222 PP

                     HHHHHH-----..-----SSSHHHHHHHTS-T CS
  Apolipoprotein 134 leelkeslaphaeeveerlssrveelreklee 165
                     +   + +l++++  +  ++++r+ ++r+ +e 
      KOO24858.1 476 ASTTEYHLTEQLHVLAREIEERMAQARRDAEM 507
                     22222222222221111111111111111111 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (730 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1241  (0.0692175); expected 358.6 (0.02)
Passed bias filter:                      549  (0.0306208); expected 358.6 (0.02)
Passed Vit filter:                        63  (0.00351386); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.68u 0.31s 00:00:00.99 Elapsed: 00:00:00.45
# Mc/sec: 4842.58
//
Query:       KOO24859.1  [L=363]
Description: geranylgeranyl transferase type-2 subunit alpha [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.7e-37  124.7  14.9    1.4e-09   37.4   0.0    6.1  6  PPTA      Protein prenyltransferase alpha subunit repeat


Domain annotation for each model (and alignments):
>> PPTA  Protein prenyltransferase alpha subunit repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.1   0.0   6.3e-05       1.1       6      28 .]      51      73 ..      47      73 .. 0.83
   2 !   27.7   0.3   8.4e-11   1.5e-06       1      26 [.      90     115 ..      90     117 .. 0.96
   3 !   29.1   0.2   3.1e-11   5.5e-07       1      27 [.     127     153 ..     127     153 .. 0.97
   4 !   37.4   0.0   7.7e-14   1.4e-09       1      26 [.     162     187 ..     162     189 .. 0.96
   5 !   26.2   0.1   2.6e-10   4.7e-06       1      26 [.     209     234 ..     209     236 .. 0.96
   6 ?    1.2   0.3     0.018   3.3e+02       1      14 [.     257     270 ..     257     271 .. 0.92

  Alignments for each domain:
  == domain 1  score: 9.1 bits;  conditional E-value: 6.3e-05
                HHHHHH-TT-CHHHHHHHHHHCH CS
        PPTA  6 ekliekdpkNYsaWnyRrwllek 28
                 k+  ++p+  + Wn Rr +l +
  KOO24859.1 51 AKVVTENPDFATMWNFRREVLGH 73
                5666789*************976 PP

  == domain 2  score: 27.7 bits;  conditional E-value: 8.4e-11
                 HHHHHHHHHHH-TT-CHHHHHHHHHH CS
        PPTA   1 ELeltekliekdpkNYsaWnyRrwll 26 
                 E++lt++++  +pk+Y +W++R w+l
  KOO24859.1  90 EFALTQECLGINPKSYPVWYHREWVL 115
                 99***********************9 PP

  == domain 3  score: 29.1 bits;  conditional E-value: 3.1e-11
                 HHHHHHHHHHH-TT-CHHHHHHHHHHC CS
        PPTA   1 ELeltekliekdpkNYsaWnyRrwlle 27 
                 EL+lt kl+ +d +N+++W yRr +++
  KOO24859.1 127 ELKLTAKLLALDDRNFHCWTYRRNVVR 153
                 9***********************985 PP

  == domain 4  score: 37.4 bits;  conditional E-value: 7.7e-14
                 HHHHHHHHHHH-TT-CHHHHHHHHHH CS
        PPTA   1 ELeltekliekdpkNYsaWnyRrwll 26 
                 EL++t+ +i+ +++NYsaW+yR+ ll
  KOO24859.1 162 ELAFTTTKIQANFSNYSAWHYRSKLL 187
                 9**********************998 PP

  == domain 5  score: 26.2 bits;  conditional E-value: 2.6e-10
                 HHHHHHHHHHH-TT-CHHHHHHHHHH CS
        PPTA   1 ELeltekliekdpkNYsaWnyRrwll 26 
                 ELel+ ++ ++ p + saW+y+rwl+
  KOO24859.1 209 ELELVRNAFFTAPEDSSAWFYHRWLI 234
                 9************************8 PP

  == domain 6  score: 1.2 bits;  conditional E-value: 0.018
                 HHHHHHHHHHH-TT CS
        PPTA   1 ELeltekliekdpk 14 
                 EL+++++l+e+ p 
  KOO24859.1 257 ELQMVDELLELEPE 270
                 9*********9997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (363 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       451  (0.0251548); expected 358.6 (0.02)
Passed bias filter:                      312  (0.017402); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.26s 00:00:00.71 Elapsed: 00:00:00.41
# Mc/sec: 2653.56
//
Query:       KOO24860.1  [L=116]
Description: hypothetical protein Ctob_003022 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (116 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       229  (0.0127726); expected 358.6 (0.02)
Passed bias filter:                      198  (0.0110436); expected 358.6 (0.02)
Passed Vit filter:                        11  (0.000613531); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.39u 0.26s 00:00:00.65 Elapsed: 00:00:00.44
# Mc/sec: 795.57
//
Query:       KOO24861.1  [L=239]
Description: isoprenylcysteine carboxyl methyltransferase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.2e-09   36.8   0.4      8e-09   35.9   0.4    1.5  1  PEMT        Phospholipid methyltransferase
     0.0001   22.6   0.2    0.00021   21.6   0.0    1.6  2  ICMT        Isoprenylcysteine carboxyl methyltransferase (ICM
      0.005   16.4   1.6     0.0075   15.8   1.6    1.3  1  DUF1295     Protein of unknown function (DUF1295)
  ------ inclusion threshold ------
       0.02   13.7   0.1      0.023   13.5   0.1    1.2  1  ERG4_ERG24  Ergosterol biosynthesis ERG4/ERG24 family


Domain annotation for each model (and alignments):
>> PEMT  Phospholipid methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.9   0.4   1.8e-12     8e-09       3      99 ..      86     190 ..      84     198 .. 0.79

  Alignments for each domain:
  == domain 1  score: 35.9 bits;  conditional E-value: 1.8e-12
        PEMT   3 lilGlllialglllvlssiealgefgtfygdfFlelmd..........klvtsGiYrylnnPeyvgstlgflGlaLitgsaaglllallvllvylialk 91 
                  +lG++l++lg++  l+++  +g    f+    l+ +d          +lv++G+Y + ++P+y+g++  +lG++++  s+  l+  +++++v  +   
  KOO24861.1  86 RFLGFALMVLGAFYFLAAVALVGARLSFLPSP-LKYQDvvgndgaqstRLVKNGVYGHCRHPMYFGVLGFCLGWSMVLISVERLFWFAVLYIVLDAKAD 183
                 57799999999999999999999988887776.333335667777899**********************************76666666666666555 PP

        PEMT  92 fvEephla 99 
                  +Ee  l 
  KOO24861.1 184 -IEESLLL 190
                 .7777664 PP

>> ICMT  Isoprenylcysteine carboxyl methyltransferase (ICMT) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.1       2.3     1e+04      72      80 ..      97     105 ..      79     113 .. 0.52
   2 !   21.6   0.0   4.7e-08   0.00021      31      92 ..     130     189 ..     119     191 .. 0.73

  Alignments for each domain:
  == domain 1  score: -3.0 bits;  conditional E-value: 2.3
        ICMT  72 vllalvall 80 
                  +++l+a+ 
  KOO24861.1  97 AFYFLAAVA 105
                 233333333 PP

  == domain 2  score: 21.6 bits;  conditional E-value: 4.7e-08
        ICMT  31 pdhklvksglykylrHPnYllfvilelatllLlcnakltalvllalvalllfvRikeEekaL 92 
                 ++++lvk+g+y ++rHP Y++ +   l+  ++l++     l+ +a+  ++l  +   Ee+ L
  KOO24861.1 130 QSTRLVKNGVYGHCRHPMYFGVLGFCLGWSMVLISVE--RLFWFAVLYIVLDAKADIEESLL 189
                 6789*****************8888888888888873..33444444444446666666665 PP

>> DUF1295  Protein of unknown function (DUF1295)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   1.6   1.7e-06    0.0075     148     193 ..     127     174 ..      58     180 .. 0.84

  Alignments for each domain:
  == domain 1  score: 15.8 bits;  conditional E-value: 1.7e-06
     DUF1295 148 dpankgkvldsGLwrysRHPNYfg..ealiWwglflialealegleal 193
                 d a  ++++++G++   RHP Yfg   +++ w+++li++e l +  +l
  KOO24861.1 127 DGAQSTRLVKNGVYGHCRHPMYFGvlGFCLGWSMVLISVERLFWFAVL 174
                 55667889***************95558999********997776444 PP

>> ERG4_ERG24  Ergosterol biosynthesis ERG4/ERG24 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.1   5.1e-06     0.023     346     431 ..     129     212 ..      83     213 .. 0.79

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 5.1e-06
  ERG4_ERG24 346 ktGskLlvsGWyglarkinYlgDwlqslswsLatgfqsvlpyfyvlyFlvlLvhRelRDeekCkkkYGedweeYkkkvpykiipyv 431
                 ++ ++L+ +G yg  r++ Y+g +   l ws+       l +f vly +vl    +  ++   k  + +d+e Y    p k+ip++
  KOO24861.1 129 AQSTRLVKNGVYGHCRHPMYFGVLGFCLGWSMVLISVERLFWFAVLY-IVLDAKADIEESLLLKGEFAADYEPYVLSKP-KFIPGL 212
                 56789**************************9987777777766665.6676666777777777777777777764433.566655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (239 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       497  (0.0277205); expected 358.6 (0.02)
Passed bias filter:                      306  (0.0170673); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.46u 0.23s 00:00:00.69 Elapsed: 00:00:00.41
# Mc/sec: 1737.98
//
Query:       KOO24862.1  [L=806]
Description: hypothetical protein Ctob_003033, partial [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      2e-17   63.3   1.3    4.7e-17   62.0   1.3    1.7  1  DUF2237   Uncharacterized protein conserved in bacteria (DUF2


Domain annotation for each model (and alignments):
>> DUF2237  Uncharacterized protein conserved in bacteria (DUF2237)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.0   1.3   2.6e-21   4.7e-17       2      88 ..     550     632 ..     549     660 .. 0.82

  Alignments for each domain:
  == domain 1  score: 62.0 bits;  conditional E-value: 2.6e-21
                 BTTSSB---S-TTT...T-STTSSSS----TT-TT-EEEEEE--HHHHHHHHH.CT---SS-BCCCTB----TT-EEEEECHHHHHHHHTT CS
     DUF2237   2 nvlgeeLelcstdp...ltGfyrdglCetseeDlGshtvcavvteeFLefsks.kGndLstpvpefefpGlkpgdrwclcasrwkealeag 88 
                 n+++++L++c++++   +tG++r+g C+ +++D G h+vc+ +++eFL+ s++   ndLs++        ++ g +wc+ca  w+ a++ +
  KOO24862.1 550 NLFRQPLKSCTQSNdgsTTGWTRTGSCNWDPSDSGYHEVCVAMSDEFLKQSARhDANDLSSV--------VQSGGHWCICAWAWASAVQRD 632
                 999*******76543448******************************99875268***999........999**************9973 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (806 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       483  (0.0269396); expected 358.6 (0.02)
Passed bias filter:                      353  (0.0196888); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.64u 0.26s 00:00:00.90 Elapsed: 00:00:00.44
# Mc/sec: 5521.60
//
Query:       KOO24863.1  [L=456]
Description: hypothetical protein Ctob_003032 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (456 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       377  (0.0210274); expected 358.6 (0.02)
Passed bias filter:                      308  (0.0171789); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.46u 0.27s 00:00:00.73 Elapsed: 00:00:00.41
# Mc/sec: 3315.11
//
Query:       KOO24864.1  [L=276]
Description: 3-hydroxybutyrate dehydrogenase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    3.2e-22   78.9   0.0    5.3e-22   78.2   0.0    1.3  1  adh_short     short chain dehydrogenase
      2e-12   47.2   0.1    3.4e-12   46.4   0.1    1.4  1  adh_short_C2  Enoyl-(Acyl carrier protein) reductase
  ------ inclusion threshold ------
      0.081   12.8   0.5       0.74    9.7   0.5    2.1  1  KR            KR domain


Domain annotation for each model (and alignments):
>> adh_short  short chain dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   78.2   0.0   8.9e-26   5.3e-22      50     188 ..       3     161 ..       1     167 [. 0.89

  Alignments for each domain:
  == domain 1  score: 78.2 bits;  conditional E-value: 8.9e-26
                 EEEEEE-TTTSHHHHHHHHHHHHHHH........SSESEEEE---SS--SSGGGCSHHHHHHHHHHHTHHHHHHHHHHHHHHH...........HCTTE CS
   adh_short  50 kalaiqvDvtdreevealvekavkkl........gkldvLvnNAGitgsgpfselseeewervievNltgvflltravlpaml...........kqssG 129
                 ka  +++Dvt+ ++ve++ +++++ +         ++ ++vnNAG+   g +  ls +++er ++vN++gv+ +++a+lp +            +  + 
  KOO24864.1   3 KARSCKMDVTSDADVETVAADVRAWIaeahasdpRRVLAVVNNAGVGTGGFVDWLSLQDYERDLAVNFMGVVRVCKAFLPLLRqsadaatalgpAVARP 101
                 5677899999999999988887665555557778899999******999999*****************************999888888777777788 PP

                 EEEEEEEGGGTSB-TTBHHHHHHHHHHHHHHHHHHHHHGG.GTEEEEEEEESSBSSHHHH CS
   adh_short 130 rIvnvsSvagkvpvagvaaYsAsKaavagltrslakelap.tgirvnavaPGlvdTdmak 188
                 rI  vsS+ gk pv+ +++YsAsK+a a+++ +l++e+++ +++ v +v P + +T++++
  KOO24864.1 102 RILIVSSMSGKLPVPLLSSYSASKHAAAAFAACLRMEVENlWNVHVCTVLPSFHRTPLTQ 161
                 9************************************987478*************9987 PP

>> adh_short_C2  Enoyl-(Acyl carrier protein) reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.4   0.1   5.7e-16   3.4e-12      45     209 ..       6     188 ..       1     197 [. 0.83

  Alignments for each domain:
  == domain 1  score: 46.4 bits;  conditional E-value: 5.7e-16
                   EEE--TTSHHHHHHHHHHHHHHH........SSEEEEEE-----EGCSS-GGG.H-HHHHHHHHHHHTHHHHHHHHHHHHHCTSC............ CS
  adh_short_C2  45 vlecDVtdeeqvealveevvekf........gklDilvnnagiapklkgpfle.tsreefdraldvnlyslfllakaalplmkeg............ 120
                    +++DVt++++ve+++++v++ +         ++  +vnnag+ +     f++ +s ++++r l+vn+ ++++++ka+lpl++++            
    KOO24864.1   6 SCKMDVTSDADVETVAADVRAWIaeahasdpRRVLAVVNNAGVGTG---GFVDwLSLQDYERDLAVNFMGVVRVCKAFLPLLRQSadaatalgpava 99 
                   578899999999888888766553333455678889*******998...666637*************************88887788888888777 PP

                   .CEEEEEEEGGGTSBSTTTTHHHHHHHHHHHHHHHHHHHHGG.GTEEEEEEEE--BHCTGGGGSTTHHHHHHHHHHHSTTSS-B-HHHHHH CS
  adh_short_C2 121 .gsivnlssvgaervvpnynaygaaKaalealtrylAvelgp.kgiRvNavspgpikTlaasgikgfdelleelearaplgrlgtpeevae 209
                     +i+ +ss++++  vp  + y+a+K+a  a++ +l +e+ +  ++ v +v p++ +T++++g    + + +++   ap  +++  + +a+
    KOO24864.1 100 rPRILIVSSMSGKLPVPLLSSYSASKHAAAAFAACLRMEVENlWNVHVCTVLPSFHRTPLTQGGV--STVSRKWGGLAPAVKAMYGDACAQ 188
                   778**************************************989****************98754..778888888887777666666665 PP

>> KR  KR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   0.5   0.00012      0.74      59     162 ..      14     134 ..       3     150 .. 0.70

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 0.00012
                 ---T.T-HHHHHHHHHHHHHHS.S---EEEE---------TTT--HHHHHHHHTTTTHHHHHHHHHTTT...S--SE............EEEEEEHHHH CS
          KR  59 aaDv.sdkdavealleeikaee.ppikGvihaAgvlrdklleemtaedleqvlapKvkGawnLhelled...esldf............fvlfSSiagl 140
                 +aDv + +++v+a+++e++a++ +++  v++ Agv   + ++ ++ +d+e+ la  + G+  + +++ +   +s d             ++++SS++g 
  KOO24864.1  14 DADVeTVAADVRAWIAEAHASDpRRVLAVVNNAGVGTGGFVDWLSLQDYERDLAVNFMGVVRVCKAFLPllrQSADAatalgpavarprILIVSSMSGK 112
                 4566234667888899999999899********************************999999998876666444431111112222224566777777 PP

                 H--TT-HHHHHHHHHHHHHHHH CS
          KR 141 lgsagqanYaaaNaflDalaey 162
                 l  +  ++Y+a  +   a+a+ 
  KOO24864.1 113 LPVPLLSSYSASKHAAAAFAAC 134
                 7777777777766666666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (276 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       331  (0.0184617); expected 358.6 (0.02)
Passed bias filter:                      284  (0.0158403); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.43u 0.26s 00:00:00.69 Elapsed: 00:00:00.40
# Mc/sec: 2071.12
//
Query:       KOO24865.1  [L=1231]
Description: wd repeat-containing protein 11 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
        6.5    7.8   7.0         30    5.7   0.0    4.9  6  WD40      WD domain, G-beta repeat


Domain annotation for each model (and alignments):
>> WD40  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.7   0.0    0.0017        30       3      38 .]      45      96 ..      43      96 .. 0.77
   2 ?   -1.5   0.1      0.32   5.7e+03      21      37 ..     351     367 ..     347     368 .. 0.71
   3 ?   -3.3   0.0         1   1.8e+04      12      24 ..     402     414 ..     398     439 .. 0.60
   4 ?    1.6   0.0     0.034     6e+02      21      37 ..     655     671 ..     643     672 .. 0.83
   5 ?   -3.1   0.0         1   1.8e+04       3      18 ..     678     694 ..     677     705 .. 0.69
   6 ?   -0.8   0.0      0.19   3.3e+03      24      36 ..     762     772 ..     749     772 .. 0.77

  Alignments for each domain:
  == domain 1  score: 5.7 bits;  conditional E-value: 0.0017
                EEEEEESS.SSEEEEEEETTSSE.....................EEEEETTSEEEEEE CS
        WD40  3 clrtltGH.ssvtslafspdgaw.....................lasGsdDgtvriWd 38
                 +++l+GH  +v+ +      +w                     las++  g + iWd
  KOO24865.1 45 IVQSLDGHkAHVCEV------RWaprptarctmldneryadtvlLASADASGQCAIWD 96
                57899***877****......6655555577777777778888677887899999998 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 0.32
                 TSSEEEEE.ETTSEEEEE CS
        WD40  21 dgawlasG.sdDgtvriW 37 
                 dg  +  G s Dg + +W
  KOO24865.1 351 DGERF-GGlSADGRIWLW 367
                 55554.34667******* PP

  == domain 3  score: -3.3 bits;  conditional E-value: 1
                 SEEEEEEETTSSE CS
        WD40  12 svtslafspdgaw 24 
                 ++tsla++p  + 
  KOO24865.1 402 PITSLAVQPAADT 414
                 6888886665554 PP

  == domain 4  score: 1.6 bits;  conditional E-value: 0.034
                 TSSEEEEEETTSEEEEE CS
        WD40  21 dgawlasGsdDgtvriW 37 
                  g+w++sG+  g + +W
  KOO24865.1 655 GGPWVISGTLEGMLSVW 671
                 799*****99****999 PP

  == domain 5  score: -3.1 bits;  conditional E-value: 1
                 EEEEEESSSS.EEEEEE CS
        WD40   3 clrtltGHss.vtslaf 18 
                 c ++l +H + v s+a 
  KOO24865.1 678 CRHSLATHRGmVKSIAL 694
                 88999999335998863 PP

  == domain 6  score: -0.8 bits;  conditional E-value: 0.19
                 EEEEEETTSEEEE CS
        WD40  24 wlasGsdDgtvri 36 
                 + ++++ Dg +r+
  KOO24865.1 762 L-IACD-DGCIRL 772
                 4.4577.****97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1231 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       266  (0.0148363); expected 358.6 (0.02)
Passed bias filter:                      212  (0.0118244); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.65u 0.24s 00:00:00.89 Elapsed: 00:00:00.40
# Mc/sec: 9174.56
//
Query:       KOO24866.1  [L=295]
Description: hypothetical protein Ctob_003030 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (295 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       293  (0.0163422); expected 358.6 (0.02)
Passed bias filter:                      229  (0.0127726); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.40u 0.24s 00:00:00.64 Elapsed: 00:00:00.39
# Mc/sec: 2292.74
//
Query:       KOO24867.1  [L=553]
Description: hypothetical protein Ctob_003027 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    8.2e-05   22.4   0.0    0.00013   21.8   0.0    1.2  1  UPF0669         Putative cytokine, C6ORF120


Domain annotation for each model (and alignments):
>> UPF0669  Putative cytokine, C6ORF120
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.8   0.0   7.2e-09   0.00013      51     126 ..     142     221 ..     128     242 .. 0.77

  Alignments for each domain:
  == domain 1  score: 21.8 bits;  conditional E-value: 7.2e-09
     UPF0669  51 lrlnhegkiilrlqslkgdadlyvsdstlkpsfdeyelqsvtcgadvvsipahfrrpvg.......igiyghpshlesefelk 126
                 + l    ++ + ++++ gd d++vs  +l p++d++  +s   g dvv i ++  r v        ig+y   +  +sefel 
  KOO24867.1 142 VTLRERCNLRISVKAISGDPDVFVSTDSLFPTIDDHLWRSGGKGDDVVLIETDHPRYVTgpladyhIGVY---AICDSEFELT 221
                 45566667778899*************************************9999987523222224444...5678888875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (553 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       366  (0.0204139); expected 358.6 (0.02)
Passed bias filter:                      229  (0.0127726); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.52u 0.26s 00:00:00.78 Elapsed: 00:00:00.44
# Mc/sec: 3733.99
//
Query:       KOO24868.1  [L=499]
Description: glutamyl-tRNA synthetase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.9e-80  270.1   0.0    2.4e-80  269.8   0.0    1.1  1  tRNA-synt_1c  tRNA synthetases class I (E and Q), catalytic d


Domain annotation for each model (and alignments):
>> tRNA-synt_1c  tRNA synthetases class I (E and Q), catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  269.8   0.0   1.4e-84   2.4e-80      29     314 .]      11     303 ..       8     303 .. 0.97

  Alignments for each domain:
  == domain 1  score: 269.8 bits;  conditional E-value: 1.4e-84
                   HHHTT-EEEEEE--SSCCC--HHHHHHHHHHHHHTT---S........SEEEEGGGGH..HHHHHHHHHHHHTTSEEEE-STHHHHHHHHCCSSHSS CS
  tRNA-synt_1c  29 AknnnGkfilRieDTdperekeeaeesiledlkwlgikwd........ekptyqsdrf..delkkyaeeLikkGkAYvcectkeeleeereeqeklg 115
                   Ak+++G+f++RieDTd++r++ e e+s+l+dl+wlg+k d        + p++qs+r+   +++++a++L+++G+AY c+ct eele+++ e+e++g
    KOO24868.1  11 AKKEGGDFLVRIEDTDEKRSTRESEASVLADLEWLGLKQDegpvaggpKAPYRQSERMvaGIYQEFAQQLMESGHAYPCFCTVEELEKKKLEAEAKG 107
                   89**********************************************99*******83358****************************9988888 PP

                   -TTTTS-HHHHHHHHHHHHHTTHSTTTS-EEEESSBTTSSGGGSSTEEEEEEESGGG.SBTTTBTSTSEEE-HHHHHHHHHHHTT-SEEEEEGGGGC CS
  tRNA-synt_1c 116 skerdrydeenlklfeeemkkgkaegekavvRlkideessvefrDlvrgriklepqe.ihdlvivksdiyPtYdfavvidDaleeithvlrteefld 211
                     e+++yd+  ++  + e+k +k++ge+++vR+k+++ ++v+++D+vrg+++ +  + ++d+++ +s ++P Y+f+v++dDa ++++hv+r+ee+l+
    KOO24868.1 108 --ENPQYDGTWRDADPAEVKRRKDAGEPYTVRFKVPRGKKVTIQDKVRGEVSWDCAAtVGDFILLRSGGMPVYNFCVAVDDATMQVSHVIRAEEHLT 202
                   ..9*************************************************9986548************************************** PP

                   CHHHHHHHHHHTT-S.-EEEEEE--EEETTSB-SHHHHHHHHHTTSSSSTT-TTSCBHHHHHHCTB-HHHHHHHHHHHCCCSSS.EEEEHHHHHHHH CS
  tRNA-synt_1c 212 ntpkyiwllealglevppfiheylrlnlekkklSKRklsllvdekqvkewddlreallnflrrlGwtpekerelftreeliksfdlnresksleafd 308
                   nt +++++lealg  vp+++h+ l+l+++++klSKR+++++  ++q++ +++l++a++n+l++lGw+   ++e+ t +el ++f+l+r +ks+++fd
    KOO24868.1 203 NTVRQVLVLEALGFTVPTYAHLALVLGEDRSKLSKRHGATS--VNQFRLEGFLPQAMINYLCLLGWNDGTDKEIYTVDELVQAFSLDRITKSPAVFD 297
                   *****************************************..999*************************************************** PP

                   HHHHHH CS
  tRNA-synt_1c 309 rkkLew 314
                   +kkL+w
    KOO24868.1 298 MKKLRW 303
                   ****98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (499 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       461  (0.0257125); expected 358.6 (0.02)
Passed bias filter:                      391  (0.0218082); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.54u 0.27s 00:00:00.81 Elapsed: 00:00:00.44
# Mc/sec: 3373.03
//
Query:       KOO24869.1  [L=550]
Description: flagellar outer dynein arm-docking complex protein 1 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
  ------ inclusion threshold ------
      0.012   15.8  11.9      0.012   15.8  11.9    5.2  4  Tropomyosin_1   Tropomyosin like
      0.025   14.7   5.4      0.025   14.7   5.4    7.2  8  BRE1            BRE1 E3 ubiquitin ligase
      0.097   10.6  36.2       0.62    7.9   4.1    2.9  2  V_ATPase_I      V-type ATPase 116kDa subunit family


Domain annotation for each model (and alignments):
>> Tropomyosin_1  Tropomyosin like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.7   4.0      0.01        61      28      84 ..      26      85 ..       8      87 .. 0.83
   2 ?   15.8  11.9     2e-06     0.012      42     136 ..      88     182 ..      84     186 .. 0.88
   3 ?   -8.8  21.2         3   1.8e+04       5     121 ..     152     265 ..     149     273 .. 0.74
   4 ?   12.2  10.2   2.5e-05      0.15      26     103 ..     311     389 ..     286     404 .. 0.76

  Alignments for each domain:
  == domain 1  score: 3.7 bits;  conditional E-value: 0.01
  Tropomyosin_1 28 qenleke.qeiksLtkknqqleee..vekleeklkeakekaeesekkktnnealtrkiql 84
                   q+ l++e   i +L+  n+ql ee  +e+  +k+ ++ +++ + +k++ + + +trki+l
     KOO24869.1 26 QQLLANErATIDKLKDDNEQLKEElsLERRHAKVYDSVSAQAQIAKLQDTGDMYTRKIEL 85
                   44444441579**********9984459999**************************985 PP

  == domain 2  score: 15.8 bits;  conditional E-value: 2e-06
  Tropomyosin_1  42 kknqqleeevekleeklkeakekaeesekkktnnealtrkiqlLEeeleesdkkLkettekLretdvkaeelERkvkaLeqerdewekkyeelee 136
                    +++q+l++++e + +k+ ++++k+   +  + nn a+ ++iq+LE+ l+++ k+ +e++   +    + ++l R++ + +q  ++ ek + e ++
     KOO24869.1  88 RRIQELDKQMEVMHKKIWDQRQKMGGINASRENNQAIAKQIQILENRLDKALKRYNEALANNKRLRENIDNLRRERLVYDQIYKKLEKELAEKKK 182
                    689******************************************************99888888888889988888888888888876665544 PP

  == domain 3  score: -8.8 bits;  conditional E-value: 3
  Tropomyosin_1   5 LkleaeeaqekaeeleekvKeleqenlekeqeiksLtkknqqleeevekleeklkeakekaeesekkktnnealtrkiqlLEeeleesdkkLkett 100
                    L+ + ++       + + +K+le+e  ek +e++ + +  +++ e  + ++++++  k++a++   ++++ ea  + +  + e+  +    +k+  
     KOO24869.1 152 LRENIDNLRRERLVYDQIYKKLEKELAEKKKEMARIIEISNKAYEARDAAQSEMQALKAQADK---EQSDFEAEWKELGKMIEQDRKMKDFMKKER 244
                    6777777777777788999*************9999888888888889999999888888765...445555555555555555556666788888 PP

  Tropomyosin_1 101 ekLretdvkaeelERkvkaLe 121
                    ekL++ + + + +  + ++L 
     KOO24869.1 245 EKLSQQEHRGDMTVEQEQSLK 265
                    999999888887766666665 PP

  == domain 4  score: 12.2 bits;  conditional E-value: 2.5e-05
  Tropomyosin_1  26 leqenlekeqeiksLtkknqqleeevekleeklkeakekaeesekkktnnealtrki.qlLEeeleesdkkLkettekL 103
                    l  + ++ e++   L + +++l+ e+eklee++ + k++ e+ + +  n ++  +ki + LE+ l ++++k ++  +k 
     KOO24869.1 311 LVTTFINAEDQNFALFNYVNELNGECEKLEEQIADIKAEIEKYKGQGLNTDNQRKKIlKDLEDRLQRTEAKAEQYEKKY 389
                    555566778888888899999******************************9999984678888888777755444443 PP

>> BRE1  BRE1 E3 ubiquitin ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.0   0.7      0.15   9.2e+02      67      87 ..      28      48 ..       5      60 .. 0.55
   2 ?   -0.9   9.7      0.31   1.8e+03      17      92 ..      65     142 ..      51     145 .. 0.81
   3 ?    0.1   9.0      0.14   8.5e+02       4      70 ..     127     193 ..     124     197 .. 0.87
   4 ?   -1.9  11.8      0.61   3.6e+03      13      74 ..     150     218 ..     144     222 .. 0.67
   5 ?   -6.3  18.8         3   1.8e+04       1      90 [.     173     262 ..     173     271 .. 0.84
   6 ?   -1.5   4.5      0.46   2.8e+03       8      58 ..     240     293 ..     236     303 .. 0.65
   7 ?    3.1   1.1     0.016        98      19      51 ..     329     361 ..     310     367 .. 0.78
   8 ?   14.7   5.4   4.1e-06     0.025      21      58 ..     363     400 ..     356     411 .. 0.88

  Alignments for each domain:
  == domain 1  score: 0.0 bits;  conditional E-value: 0.15
        BRE1 67 llsKsselieqLkelekefvr 87
                ll+ ++ +i++Lk+  +++++
  KOO24869.1 28 LLANERATIDKLKDDNEQLKE 48
                333333334444443333333 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 0.31
        BRE1  17 eqls.kkvkeltileekklrleaekakadqkyfaamrsk.dalenelkkLnkllsKsselieqLkelekefvrklkel 92 
                 +q++ +k++++ ++  +k+ le+   ++  k++++m++k  + ++++  +n++ + ++ + +q + le+ + + lk +
  KOO24869.1  65 AQAQiAKLQDTGDMYTRKIELEKRRIQELDKQMEVMHKKiWDQRQKMGGINASRENNQAIAKQIQILENRLDKALKRY 142
                 444425778999999999999999999999999999554268889999999999999999999999999999988865 PP

  == domain 3  score: 0.1 bits;  conditional E-value: 0.14
        BRE1   4 ELvklekafeelseqlskkvkeltileekklrleaekakadqkyfaamrskdalenelkkLnkllsK 70 
                  ++ le+  +++ +  ++ +++ ++l e++  l  e    dq y+ ++++    ++e+ ++ +  +K
  KOO24869.1 127 QIQILENRLDKALKRYNEALANNKRLRENIDNLRRERLVYDQIYKKLEKELAEKKKEMARIIEISNK 193
                 5677899999999999999******************************999999999887666666 PP

  == domain 4  score: -1.9 bits;  conditional E-value: 0.61
        BRE1  13 eelseqlskkvkeltileekklrleaekakadqkyf.......aamrskdalenelkkLnkllsKssel 74 
                 + l+e+++++  e     +  ++le+e a+ +++          a  ++da + e+++L+++ +K+++ 
  KOO24869.1 150 KRLRENIDNLRRERLVYDQIYKKLEKELAEKKKEMAriieisnKAYEARDAAQSEMQALKAQADKEQSD 218
                 667777777777777777777777777666666654111111134457888999999999999998876 PP

  == domain 5  score: -6.3 bits;  conditional E-value: 3
        BRE1   1 lqkELvklekafeelseqlskkvkeltileekklrleaekakadqkyfaamrskdalenelkkLnkllsKsselieqLke...lekefvrklk 90 
                 l+kEL + +k++    e  +k ++   + +++++ l+a+ +k++  + a  ++  ++  + +k++  ++K++e+ +q ++   +   +v++ +
  KOO24869.1 173 LEKELAEKKKEMARIIEISNKAYEARDAAQSEMQALKAQADKEQSDFEAEWKELGKMIEQDRKMKDFMKKEREKLSQQEHrgdM---TVEQEQ 262
                 689999999999999999999999999999999999999999999999999999999999999999999999999998884442...333333 PP

  == domain 6  score: -1.5 bits;  conditional E-value: 0.46
        BRE1   8 lekafeelseq...lskkvkeltileekklrleaekakadqkyfaamrskdale 58 
                 ++k++e+ls+q    ++ v++ ++l++k+lr +  +ak +  + a m + ++ e
  KOO24869.1 240 MKKEREKLSQQehrGDMTVEQEQSLKKKVLRGNWGIAKDKASIHASMEKVQSYE 293
                 445555554441114667777888888888888888888888888777766655 PP

  == domain 7  score: 3.1 bits;  conditional E-value: 0.016
        BRE1  19 lskkvkeltileekklrleaekakadqkyfaam 51 
                 ++++  e + lee+++ ++ae++k + +  +++
  KOO24869.1 329 VNELNGECEKLEEQIADIKAEIEKYKGQGLNTD 361
                 566667788999999999999999887655555 PP

  == domain 8  score: 14.7 bits;  conditional E-value: 4.1e-06
        BRE1  21 kkvkeltileekklrleaekakadqkyfaamrskdale 58 
                 + +k l++le++++r+ea+ ++ ++ky aam+  +al+
  KOO24869.1 363 QRKKILKDLEDRLQRTEAKAEQYEKKYEAAMKTVNALK 400
                 5568899***************************9997 PP

>> V_ATPase_I  V-type ATPase 116kDa subunit family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.4  23.5   0.00015      0.88      10     152 ..      68     209 ..      63     288 .. 0.73
   2 ?    7.9   4.1    0.0001      0.62      24      99 ..     327     403 ..     310     433 .. 0.75

  Alignments for each domain:
  == domain 1  score: 7.4 bits;  conditional E-value: 0.00015
  V_ATPase_I  10 qfrDlnedvnafqrkfvkevrrcdemerklrfleeeieklekavikeeeaeesleapeekeldeleeelekleeelkelnenleklkkelnelvelkav 108
                 q+  l++   ++ rk   e rr++e+++++++++++i + + +++   +a+++++++ +k+++ le++l+k+ ++ +e  +n+++l+++  +l  ++ v
  KOO24869.1  68 QIAKLQDTGDMYTRKIELEKRRIQELDKQMEVMHKKIWD-QRQKMGGINASRENNQAIAKQIQILENRLDKALKRYNEALANNKRLRENIDNLRRERLV 165
                 55556666678889999999******************9.6666677777999999999**************************************** PP

  V_ATPase_I 109 lekakefleee.eeeeeeeeseeeeee...keeeeeeeseeeeeeell 152
                 + ++ + le+e +e+++e  +  e ++   +    +++++++e ++l+
  KOO24869.1 166 YDQIYKKLEKElAEKKKEMARIIEISNkayE----ARDAAQSEMQALK 209
                 ***9999998865444443333222221221....2222222221111 PP

  == domain 2  score: 7.9 bits;  conditional E-value: 0.0001
  V_ATPase_I  24 kfvkevr.rcdemerklrfleeeieklekavikeeeaeesleapeekeldeleeelekleeelkelnenleklkkel 99 
                 ++v+e+   c+++e+++  +++eiek++ +  +++++ ++  ++ e++l++ e++ e++e++ +   ++ ++lk   
  KOO24869.1 327 NYVNELNgECEKLEEQIADIKAEIEKYKGQGLNTDNQRKKILKDLEDRLQRTEAKAEQYEKKYEAAMKTVNALKVGI 403
                 68888864799999999999999999888888888777777777777777777777777777777777776666554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (550 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2771  (0.154554); expected 358.6 (0.02)
Passed bias filter:                      447  (0.0249317); expected 358.6 (0.02)
Passed Vit filter:                        98  (0.005466); expected 17.9 (0.001)
Passed Fwd filter:                        54  (0.00301188); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 1.43u 0.40s 00:00:01.83 Elapsed: 00:00:00.61
# Mc/sec: 2722.15
//
Query:       KOO24870.1  [L=149]
Description: hypothetical protein Ctob_003025 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (149 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       390  (0.0217525); expected 358.6 (0.02)
Passed bias filter:                      246  (0.0137208); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.27s 00:00:00.65 Elapsed: 00:00:00.43
# Mc/sec: 1038.20
//
Query:       KOO24871.1  [L=659]
Description: hypothetical protein Ctob_004150 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.8e-21   76.3   0.0    3.1e-21   75.5   0.0    1.3  1  VPS9      Vacuolar sorting protein 9 (VPS9) domain


Domain annotation for each model (and alignments):
>> VPS9  Vacuolar sorting protein 9 (VPS9) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   75.5   0.0   1.7e-25   3.1e-21       4     100 ..     517     624 ..     514     627 .. 0.96

  Alignments for each domain:
  == domain 1  score: 75.5 bits;  conditional E-value: 1.7e-25
        VPS9   4 aseeLkklseaksPreKlkcllrtieeiteav...........skseegeslgaDdlLPiliyviikssppnlysnvqfikrFrsktllegeegYyltt 91 
                 a++ L+ l+++++P eK k+ll+++ee++++             k+++g+++gaDdlLP+l+yv+ +s++ +l +++ fi +F+ + + +g+egY+l++
  KOO24871.1 517 AVQLLRTLTFYRTPEEKAKVLLEACEEVIKCAtralslraagtGKASKGAAMGADDLLPLLVYVVTRSRVTSLPAELAFICDFLPAGQQHGKEGYALVS 615
                 78999**************************************999***************************************************** PP

        VPS9  92 leaavefie 100
                 l++a+   +
  KOO24871.1 616 LQCACRVAQ 624
                 ****98765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (659 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       420  (0.0234257); expected 358.6 (0.02)
Passed bias filter:                      328  (0.0182944); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.55u 0.26s 00:00:00.81 Elapsed: 00:00:00.42
# Mc/sec: 4667.08
//
Query:       KOO24872.1  [L=387]
Description: sedoheptulose-1,7-bisphosphatase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    9.5e-35  119.8   0.0    1.5e-34  119.2   0.0    1.2  1  FBPase    Fructose-1-6-bisphosphatase, N-terminal domain


Domain annotation for each model (and alignments):
>> FBPase  Fructose-1-6-bisphosphatase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  119.2   0.0   8.2e-39   1.5e-34      24     177 ..      67     216 ..      45     221 .. 0.88

  Alignments for each domain:
  == domain 1  score: 119.2 bits;  conditional E-value: 8.2e-39
      FBPase  24 llsalklalkiisskvrkaelvnllGlagaeNvtGdeqkklDvladeiliealkaseevkvlvSEEeeelivlerekegkyvvafDPlDGSSnidtnvs 122
                 +l+ +k+ l + + k+  a    l+   g+ N++Gd q  +Dv+ad+i+ +a+k+s +v+  +SEEe+e++    + +g+++v+ DPlDGSS++d n +
  KOO24872.1  67 ILMVIKEQLDA-CAKITDALRSTLVTVEGSANTFGDAQLSVDVIADQIMWDAVKSSAVVAWGASEEEPEIKPC--NPKGRFTVCWDPLDGSSIVDNNWA 162
                 55555555544.4566777777888999999****************************************99..99********************** PP

      FBPase 123 vGtifsiyrkksedeettidvlqpGkeqvAAgyvvYGsstmlVltlgaGvngFtl 177
                 vGt+++i+ k+s   + +  +  +G++qv A  ++YG++t++ + l++Gv +F +
  KOO24872.1 163 VGTMIGIWSKESGSGTNGL-IGATGRDQVTALIALYGPRTTVLVGLDDGVYEFSY 216
                 *********7765444444.899******************************87 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (387 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       365  (0.0203581); expected 358.6 (0.02)
Passed bias filter:                      338  (0.0188521); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.25s 00:00:00.72 Elapsed: 00:00:00.41
# Mc/sec: 2805.46
//
Query:       KOO24873.1  [L=353]
Description: nucleoside diphosphate-linked moiety x motif 22 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.04   14.0   0.6       0.18   11.9   0.6    2.1  1  NUDIX     NUDIX domain


Domain annotation for each model (and alignments):
>> NUDIX  NUDIX domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.6   9.8e-06      0.18       5      52 ..     122     190 ..     119     213 .. 0.80

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 9.8e-06
                 EEEEEEEETTSEEEEEEES..SSSTTT.EESSEEECBT..................TSHHHHHHHHHHH CS
       NUDIX   5 avgvvllnekgevLlvrrs..kkpfpg.WelPgGkvep..................gEtpeeAArREle 52 
                 +v +vl  ++g+++l+rrs   +  +g +  P G+ ep                   E++ +AA+REl+
  KOO24873.1 122 GVEAVLETSDGQIVLLRRStaVTGGHGlYNGPSGHPEPshagleeapvptatnaeaVEAASQAAARELF 190
                 677899999**********64333333667999999998888888888888888866688899999986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (353 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       427  (0.0238162); expected 358.6 (0.02)
Passed bias filter:                      320  (0.0178482); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.22s 00:00:00.68 Elapsed: 00:00:00.39
# Mc/sec: 2714.74
//
Query:       KOO24874.1  [L=312]
Description: hypothetical protein Ctob_004153 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.1e-22   80.4   0.0    4.4e-22   78.4   0.0    2.1  2  SEP        SEP domain
    1.3e-09   38.1   0.0    1.9e-09   37.6   0.0    1.3  1  UBX        UBX domain
  ------ inclusion threshold ------
       0.03   14.1   0.1       0.11   12.3   0.1    1.9  1  ubiquitin  Ubiquitin family


Domain annotation for each model (and alignments):
>> SEP  SEP domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   78.4   0.0   7.3e-26   4.4e-22       1      76 []     137     211 ..     137     211 .. 0.96
   2 ?   -2.2   0.0       1.1   6.6e+03      36      59 ..     229     254 ..     225     262 .. 0.69

  Alignments for each domain:
  == domain 1  score: 78.4 bits;  conditional E-value: 7.3e-26
         SEP   1 ltlwknGFsvdDGelrsyddpenaeflesikkGevPeelekvekgeevevnledrrneeykppkkpkfkaFsGsGr 76 
                 +t++k+GF+vdDG+lr+ ddp+na+fl+++++G++P el   + + e +v+++d++ e+ykpp+  + k+FsG+Gr
  KOO24874.1 137 ITFYKDGFTVDDGPLRKGDDPANAAFLAAVNQGQMPAELIGEDGAAEGDVHIIDKSGEAYKPPPV-TLKPFSGEGR 211
                 8***************************************999*******************986.699*****96 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 1.1
         SEP  36 Peele.kve.kgeevevnledrrnee 59 
                 P+el+ +++ + + ++v++ d + + 
  KOO24874.1 229 PQELTlDMAaPTTTLQVRMADGSRKV 254
                 77777644448888999988876655 PP

>> UBX  UBX domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.6   0.0   3.3e-13   1.9e-09       4      79 ..     238     309 ..     235     311 .. 0.89

  Alignments for each domain:
  == domain 1  score: 37.6 bits;  conditional E-value: 3.3e-13
                 SSEEEEEEEETTSTEEEEEEESSSBHHHHHHHHHHHCCCCCTSEEEEETTTTEEGGCCCCSBCCCCTTTSCEEEEE CS
         UBX   4 edatrlqiRlpdGsrlvrrFkksdtlesvyeyVdsklfekeepFqLltsfPrreltksdkktLsdlgllpnstlvl 79 
                  ++t+lq+R++dGsr v + ++++t+ ++ +++++ + + +  F+L   fP ++l ++   tL d+  l n+++v+
  KOO24874.1 238 APTTTLQVRMADGSRKVVKANHTHTVLQLKKHIATLAPGVA--FTLKGGFPPKPLNDDA-LTLADA-KLLNESIVF 309
                 689*****************************999887754..9**************8.******.666777765 PP

>> ubiquitin  Ubiquitin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.1   1.9e-05      0.11       1      32 [.     243     274 ..     243     309 .. 0.69

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 1.9e-05
                 EEEEETTSEEEEEEEETTSBHHHHHHHHHHHH CS
   ubiquitin   1 itvktldgkkitleveesdtveelKekiaeke 32 
                 ++v++ dg+   ++ + + tv++lK++ia   
  KOO24874.1 243 LQVRMADGSRKVVKANHTHTVLQLKKHIATLA 274
                 589999**********************9765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (312 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       376  (0.0209716); expected 358.6 (0.02)
Passed bias filter:                      309  (0.0172346); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.44u 0.25s 00:00:00.69 Elapsed: 00:00:00.41
# Mc/sec: 2306.32
//
Query:       KOO24875.1  [L=361]
Description: hypothetical protein Ctob_004154 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (361 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2411  (0.134475); expected 358.6 (0.02)
Passed bias filter:                      458  (0.0255452); expected 358.6 (0.02)
Passed Vit filter:                        49  (0.002733); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.62u 0.27s 00:00:00.89 Elapsed: 00:00:00.42
# Mc/sec: 2592.77
//
Query:       KOO24876.1  [L=344]
Description: srrm2 protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      5e-15   55.4   5.2      5e-15   55.4   5.2    2.7  2  cwf21       cwf21 domain
    1.2e-08   34.7   0.1    2.3e-08   33.7   0.1    1.5  1  PDZ_6       PDZ domain
    0.00043   20.5   0.4     0.0018   18.6   0.4    2.1  2  PDZ_2       PDZ domain
    0.00086   19.6   0.1     0.0026   18.0   0.1    1.8  1  PDZ         PDZ domain


Domain annotation for each model (and alignments):
>> cwf21  cwf21 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.4   5.2   1.1e-18     5e-15       1      42 [.      57      98 ..      57     100 .. 0.97
   2 ?  -12.2  14.7         4   1.8e+04      15      40 ..     152     185 ..     151     193 .. 0.57

  Alignments for each domain:
  == domain 1  score: 55.4 bits;  conditional E-value: 1.1e-18
       cwf21  1 LeHerrReIEvkvlelrdeLEeeglseeeIeervdelRekLl 42
                L+H+r+Re+Evk+l l+++LEe+gl  +e+ee+v++lR kLl
  KOO24876.1 57 LDHNRKREVEVKCLALQEQLEEQGLAADEVEEKVSALRTKLL 98
                89***************************************9 PP

  == domain 2  score: -12.2 bits;  conditional E-value: 4
       cwf21  15 elrdeLEeeg........lseeeIeervdelRek 40 
                 el+++L ee         +   e ee++++ Re+
  KOO24876.1 152 ELQQKLKEERmakreaeeQARREAEEELERERER 185
                 6777775543233333334555555666555554 PP

>> PDZ_6  PDZ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.7   0.1   5.2e-12   2.3e-08       2      30 ..     241     269 ..     240     287 .. 0.93

  Alignments for each domain:
  == domain 1  score: 33.7 bits;  conditional E-value: 5.2e-12
       PDZ_6   2 VtaVdpgsPAdrAGlrvGDiilsvNGqpv 30 
                 VtaV+pg+ A++AG+ vGDii++v G+++
  KOO24876.1 241 VTAVKPGGAAAEAGVLVGDIIVEVMGKDC 269
                 9**************************98 PP

>> PDZ_2  PDZ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.0      0.77   3.4e+03      63      77 ..     219     233 ..     207     238 .. 0.80
   2 !   18.6   0.4   3.9e-07    0.0018      17      46 ..     240     269 ..     221     282 .. 0.86

  Alignments for each domain:
  == domain 1  score: -1.6 bits;  conditional E-value: 0.77
                 -EEEEEEEETTEEEE CS
       PDZ_2  63 dtVkltvlRdgkkkt 77 
                 + V+lt+ R+++ + 
  KOO24876.1 219 KYVTLTLVRKDDSLG 233
                 569999999998765 PP

  == domain 2  score: 18.6 bits;  conditional E-value: 3.9e-07
                 EEEEE-TTSGGGGT.--TT-EEEEETTB-- CS
       PDZ_2  17 lvvsVkeggPaakaglkagDvilkvdgkkv 46 
                  v+ Vk+gg aa+ag+  gD+i++v gk+ 
  KOO24876.1 240 HVTAVKPGGAAAEAGVLVGDIIVEVMGKDC 269
                 3789*********************99876 PP

>> PDZ  PDZ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.0   0.1   5.9e-07    0.0026      16      57 ..     236     268 ..     214     271 .. 0.78

  Alignments for each domain:
  == domain 1  score: 18.0 bits;  conditional E-value: 5.9e-07
                 EEEETTSSSSSSEEEEEECTTSHHHHHTSSTTEEEEEETTEE CS
         PDZ  16 lkggsdqrgdkgifvsevlpggaaeadglkvGDkIlsvNgvd 57 
                 l+         + +v+ v pggaa+ +g+ vGD+I++v g+d
  KOO24876.1 236 LD---------NNHVTAVKPGGAAAEAGVLVGDIIVEVMGKD 268
                 43.........4589******9999999**********9987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (344 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2256  (0.12583); expected 358.6 (0.02)
Passed bias filter:                      653  (0.0364214); expected 358.6 (0.02)
Passed Vit filter:                       168  (0.00937029); expected 17.9 (0.001)
Passed Fwd filter:                        59  (0.00329076); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.80u 0.31s 00:00:01.11 Elapsed: 00:00:00.46
# Mc/sec: 2264.83
//
Query:       KOO24877.1  [L=205]
Description: hypothetical protein Ctob_004148 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.5e-20   73.4   0.0    2.1e-10   40.9   0.0    2.2  2  SAM_1           SAM domain (Sterile alpha motif)
    5.8e-19   68.0   0.0    2.8e-10   40.1   0.0    2.2  2  SAM_2           SAM domain (Sterile alpha motif)
    3.9e-06   26.7   0.0      0.024   14.6   0.0    2.6  2  SAM_PNT         Sterile alpha motif (SAM)/Pointed domain
    2.9e-05   23.8   0.0       0.26   11.1   0.0    2.4  2  SAM_3           SAM domain (Sterile alpha motif)
  ------ inclusion threshold ------
       0.11   12.8   0.1        6.9    7.0   0.0    2.2  2  Pro-kuma_activ  Pro-kumamolisin, activation domain


Domain annotation for each model (and alignments):
>> SAM_1  SAM domain (Sterile alpha motif)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.9   0.0   5.7e-14   2.1e-10       2      64 .]      36      99 ..      35      99 .. 0.96
   2 !   30.5   0.0     1e-10   3.7e-07       1      45 [.     121     165 ..     121     170 .. 0.93

  Alignments for each domain:
  == domain 1  score: 40.9 bits;  conditional E-value: 5.7e-14
                CTTHSSHHHHHHHTTSGGGHHHHHTTTSSHHHHTTSCHHHHHH.CTTTSHHHHHHHHHHHHHHH CS
       SAM_1  2 kwsvedVgeWLesiglgqYadlFrageidgdaLlllteddLek.lgvtllGHrkkIlyaIqrLk 64
                +w v dV+ W esig+++Y+++F++ +idg  Ll l++d L + l+ +   H   I+ +I  L+
  KOO24877.1 36 QWEVVDVQAWVESIGFHEYRNAFESAKIDGTRLLALNADKLSSeLMLSASEHIALIAMEIAELR 99
                79******************************************************99998875 PP

  == domain 2  score: 30.5 bits;  conditional E-value: 1e-10
                 CCTTHSSHHHHHHHTTSGGGHHHHHTTTSSHHHHTTSCHHHHHHC CS
       SAM_1   1 skwsvedVgeWLesiglgqYadlFrageidgdaLlllteddLekl 45 
                 s+w+v  V+ WLe+ gl+  a +F+a e+dg +Ll+l+  dLe l
  KOO24877.1 121 SGWDVGAVAAWLEDAGLEAFAPAFEAAEVDGATLLRLSPRDLETL 165
                 68****************************************974 PP

>> SAM_2  SAM domain (Sterile alpha motif)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.1   0.0   7.9e-14   2.8e-10       3      65 ..      36      98 ..      34      99 .. 0.93
   2 !   26.0   0.0   2.1e-09   7.4e-06       2      45 ..     121     163 ..     120     183 .. 0.88

  Alignments for each domain:
  == domain 1  score: 40.1 bits;  conditional E-value: 7.9e-14
                GHHHHHHHHHHHHTTTGGGHHHHHHTTCSHHHHHTTSCHHHHH.HTTHHHHHHHHHHHHHHHHH CS
       SAM_2  3 swsledvaeWLrsiglkqytdnFrdagitgaelllrlteedLk.rlGitsvghrkkilkkiqel 65
                 w++ dv+ W++sig+++y ++F++a+i+g   ll l++++L  +l  +++ h   i  +i el
  KOO24877.1 36 QWEVVDVQAWVESIGFHEYRNAFESAKIDG-TRLLALNADKLSsELMLSASEHIALIAMEIAEL 98
                79****************************.9999*******88*********99999999887 PP

  == domain 2  score: 26.0 bits;  conditional E-value: 2.1e-09
                 GGHHHHHHHHHHHHTTTGGGHHHHHHTTCSHHHHHTTSCHHHHH CS
       SAM_2   2 eswsledvaeWLrsiglkqytdnFrdagitgaelllrlteedLk 45 
                 + w++  va WL+  gl+ ++++F+ a+++g   llrl+  dL+
  KOO24877.1 121 SGWDVGAVAAWLEDAGLEAFAPAFEAAEVDG-ATLLRLSPRDLE 163
                 67*****************************.9999******94 PP

>> SAM_PNT  Sterile alpha motif (SAM)/Pointed domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.6   0.0   6.8e-06     0.024      15      66 ..      32      81 ..      22      95 .. 0.81
   2 !    9.6   0.0   0.00024      0.85      12      66 ..     115     167 ..     104     193 .. 0.78

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 6.8e-06
                SSGGG--HHHHHHHHHHH.HHHTT-SS-HGGGCTS-HHHHHHS-HHHHHHHSC CS
     SAM_PNT 15 adPqeWtkehVlewlewa.vkefdlakidfsefdmsGkeLcsltkeefleaap 66
                 dP++W   +V+ w+e    +e++     f+  +++G  L++l+  ++ + + 
  KOO24877.1 32 SDPRQWEVVDVQAWVESIgFHEYR---NAFESAKIDGTRLLALNADKLSSELM 81
                59*************975245565...4699999**********999987665 PP

  == domain 2  score: 9.6 bits;  conditional E-value: 0.00024
                 TSSSSGGG--HHHHHHHHHHHHHHTT-SS-HGGGCTS-HHHHHHS-HHHHHHHSC CS
     SAM_PNT  12 aipadPqeWtkehVlewlewavkefdlakidfsefdmsGkeLcsltkeefleaap 66 
                 a+   P+ W+   V+ wle a  e  ++   f+  +++G++L+ l+  ++++++ 
  KOO24877.1 115 AMHPPPSGWDVGAVAAWLEDAGLEAFAP--AFEAAEVDGATLLRLSPRDLETLVS 167
                 44557999**********9887665555..577777**********999998776 PP

>> SAM_3  SAM domain (Sterile alpha motif)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.2   0.0   0.00014       0.5      14      49 ..      41      77 ..      26      80 .. 0.87
   2 !   11.1   0.0   7.3e-05      0.26      15      52 ..     128     166 ..     126     172 .. 0.85

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.00014
       SAM_3 14 eVkaWLtakgFskktvesLg..klsGaqLfsLskeeLe 49
                +V+aW +  gF+++   +++  k++G+ L++L+ ++L 
  KOO24877.1 41 DVQAWVESIGFHEY-RNAFEsaKIDGTRLLALNADKLS 77
                9************6.8999733689********99986 PP

  == domain 2  score: 11.1 bits;  conditional E-value: 7.3e-05
       SAM_3  15 VkaWLtakgFskktvesLg..klsGaqLfsLskeeLeqic 52 
                 V+aWL+  g+++    +++  +++Ga L++Ls+++Le++ 
  KOO24877.1 128 VAAWLEDAGLEAF-APAFEaaEVDGATLLRLSPRDLETLV 166
                 899*********7.6888722579************9975 PP

>> Pro-kuma_activ  Pro-kumamolisin, activation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.9   0.1     0.016        59      59     101 ..      34      82 ..      27      89 .. 0.75
   2 ?    7.0   0.0    0.0019       6.9      59      79 ..     120     140 ..      83     154 .. 0.80

  Alignments for each domain:
  == domain 1  score: 3.9 bits;  conditional E-value: 0.016
  Pro-kuma_activ  59 pseeaidaVrnwLessgiaasr......hsdtkgwiafsatvaqverll 101
                     p + ++  V++w es g++  r        d+ +++a++a   ++e +l
      KOO24877.1  34 PRQWEVVDVQAWVESIGFHEYRnafesaKIDGTRLLALNADKLSSELML 82 
                     67778999***********999777766666666666666666666555 PP

  == domain 2  score: 7.0 bits;  conditional E-value: 0.0019
  Pro-kuma_activ  59 pseeaidaVrnwLessgiaas 79 
                     ps  ++ aV +wLe++g++a 
      KOO24877.1 120 PSGWDVGAVAAWLEDAGLEAF 140
                     6777999**********9875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (205 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       536  (0.0298957); expected 358.6 (0.02)
Passed bias filter:                      428  (0.0238719); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.42u 0.28s 00:00:00.70 Elapsed: 00:00:00.42
# Mc/sec: 1455.92
//
Query:       KOO24878.1  [L=1621]
Description: DNA excision repair protein ercc-1, partial [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.2e-33  115.5   0.0    2.4e-33  114.5   0.0    1.5  1  Rad10           Binding domain of DNA repair protein Ercc1 (r
    8.8e-32  109.6  16.2    5.5e-10   39.7   0.1    5.2  6  Ank_2           Ankyrin repeats (3 copies)
      1e-27   96.1  17.5    8.2e-06   26.3   0.1    8.1  7  Ank_4           Ankyrin repeats (many copies)
    3.4e-17   62.5   0.0    7.5e-17   61.4   0.0    1.5  1  Dev_Cell_Death  Development and cell death domain
    6.3e-17   61.4  14.6    0.00014   22.1   0.0    6.9  6  Ank_5           Ankyrin repeats (many copies)
    3.7e-14   51.4  10.1       0.12   13.0   0.0    9.7 10  Ank_3           Ankyrin repeat
      2e-13   50.1  16.1      0.021   15.2   0.1    8.9  8  Ank             Ankyrin repeat
    1.1e-05   26.3   0.0    3.8e-05   24.6   0.0    1.9  1  Trypsin_2       Trypsin-like peptidase domain
  ------ inclusion threshold ------
      0.075   13.1   0.0       0.42   10.7   0.0    2.3  2  HHH_2           Helix-hairpin-helix motif
       0.13   12.9   1.9       0.44   11.2   0.0    3.0  2  HHH_5           Helix-hairpin-helix domain
       0.33   11.3  11.6       0.52   10.7   5.1    2.8  2  Csm1_N          Csm1 N-terminal domain


Domain annotation for each model (and alignments):
>> Rad10  Binding domain of DNA repair protein Ercc1 (rad10/Swi10)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  114.5   0.0   1.5e-36   2.4e-33       7     113 ..      94     200 ..      92     201 .. 0.98

  Alignments for each domain:
  == domain 1  score: 114.5 bits;  conditional E-value: 1.5e-36
       Rad10   7 rqkgnplLkslknvpweykdivpDyvigsttcvlflslkyhklhpeYieerlkklkkkyklrvlLvlvDvedseevlkeLnkicilndltlllawsaee 105
                  q+gnp+L+ ++nvpw+y+++++Dyv+++ttc+lfls++yh lhp+Y+++rl +l+  y+lr++LvlvD++d++e +  +++ ++++d t +la+s  e
  KOO24878.1  94 LQQGNPVLRAIRNVPWQYGETTADYVLSETTCALFLSIRYHLLHPNYVTRRLLELTLGYTLRIVLVLVDCDDPDEPVLAITQKALRQDATTVLAFSVVE 192
                 69******************************************************99***************************************** PP

       Rad10 106 aaryletl 113
                 aarylet+
  KOO24878.1 193 AARYLETF 200
                 ******98 PP

>> Ank_2  Ankyrin repeats (3 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.1   0.0   1.2e-08     2e-05      12      81 ..     348     430 ..     337     432 .. 0.79
   2 !   39.7   0.1   3.4e-13   5.5e-10       1      80 [.     371     462 ..     371     465 .. 0.83
   3 !   28.1   0.4   1.4e-09   2.3e-06       1      77 [.     439     533 ..     439     535 .. 0.79
   4 !   30.3   0.1   2.9e-10   4.8e-07       2      80 ..     473     569 ..     472     570 .. 0.79
   5 !   32.6   0.4   5.7e-11   9.3e-08       2      80 ..     596     684 ..     594     686 .. 0.86
   6 ?   -2.8   0.0       6.2     1e+04      42      65 ..     821     851 ..     813     862 .. 0.57

  Alignments for each domain:
  == domain 1  score: 25.1 bits;  conditional E-value: 1.2e-08
       Ank_2  12 lvklLl.egadpn..k..ngktaLhyAakngnl..eivklLleh......adndgrtpLhyAarsghleivklLlekgadinl 81 
                  ++ Ll +gad +      +  +Lh+++ +g+    +++ Ll +      ad +g+t+Lh+A+  + + ++ lLle ga++++
  KOO24878.1 348 RLDALLrAGADYErpAgeLNVIPLHLSVLAGDQrtACLERLLREgasvdkADAKGTTALHAASTLNLPHVCTLLLEAGAKPER 430
                 5677888888877652567799*******9965336789999866776677799*********99*999******99*99876 PP

  == domain 2  score: 39.7 bits;  conditional E-value: 3.4e-13
       Ank_2   1 LhlAakng.nl.elvklLl.egadpn..k.ngktaLhyAakngnleivklLleh.....ad.ndgrtpLhyAarsghleivklLlekgadin 80 
                 Lhl ++ g +   +++ Ll ega ++  + +g taLh+A   +  +++ lLle+      + ++g  pLh+Aa+s+  e++++Ll +ga+++
  KOO24878.1 371 LHLSVLAGdQRtACLERLLrEGASVDkaDaKGTTALHAASTLNLPHVCTLLLEAgakpeRRgRKGVRPLHLAAWSNAAEAAEVLLRHGASVE 462
                 68888865233369******99999965389******99999988*******977565522699*********************99*9875 PP

  == domain 3  score: 28.1 bits;  conditional E-value: 1.4e-09
       Ank_2   1 LhlAakngnlelvklLl.egadpn..k.ngktaLhyAakngnleivklLleh......adndgrtpLhyAarsg........hleivklLlekga 77 
                 LhlAa +++ e+ + Ll +ga ++  + +++ta h+Aa ++  e+++ Ll         d  gr +LhyA  +         + ++++lLl++g+
  KOO24878.1 439 LHLAAWSNAAEAAEVLLrHGASVEgiDkKKRTACHAAAAADAPEALEVLLGGganverPDARGRRALHYATTCCrcadpacrRVRALQLLLDHGV 533
                 8******999*******9998888763589**********999*******745345555588********9874334444446777778887776 PP

  == domain 4  score: 30.3 bits;  conditional E-value: 2.9e-10
       Ank_2   2 hlAakngnlelvklLl.egadpn..k.ngktaLhyAakn........gnleivklLleh......adndgrtpLhyAarsghleivklLlekgadin 80 
                 h Aa  +++e+++ Ll  ga+++  +  g+ aLhyA+            + +++lLl+h       d  g+++L +Aa++++   ++lLl +gad n
  KOO24878.1 473 HAAAAADAPEALEVLLgGGANVErpDaRGRRALHYATTCcrcadpacRRVRALQLLLDHgvevdaRDAGGWSALDVAAEHNRVAPLRLLLSRGADAN 569
                 667777889*******88888877547*********99643333322223468*****99885544488*********************99**987 PP

  == domain 5  score: 32.6 bits;  conditional E-value: 5.7e-11
       Ank_2   2 hlAakngnlelvklLl.egadpn..k.ngktaLhyAakngnleivklLleh......adndgrtpLhyAarsghleivklLlekgadin 80 
                 +lAa  g+ e+   Ll +ga ++  + +g taLh++a + +l+++++L+++      +d+ gr++ hyAarsg+  +++ L e g+d+ 
  KOO24878.1 596 ILAAHAGAREATATLLaAGALIDapDaFGATALHASAVGAQLKTLQFLVQAgaaidvVDDAGRSAAHYAARSGSVACLRALREAGVDMV 684
                 578888988888888889988876547*******99999999*******967787777799********************99998875 PP

  == domain 6  score: -2.8 bits;  conditional E-value: 6.2
       Ank_2  42 vklLleh.....ad..ndgrtpLhyAarsgh 65 
                 ++ Lle+     +      + +L +A+++++
  KOO24878.1 821 MRQLLEAqrdeaLGraWRAEDALAIAISENR 851
                 5666664333331133445567777776554 PP

>> Ank_4  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.2   0.1     0.088   1.4e+02       4      55 .]     280     353 ..     278     353 .. 0.84
   2 !   11.3   0.0   0.00024       0.4       6      43 ..     374     410 ..     369     414 .. 0.87
   3 !    9.2   0.0    0.0011       1.8      16      55 .]     417     455 ..     415     455 .. 0.93
   4 !   17.7   0.1   2.5e-06    0.0041       2      43 ..     469     509 ..     468     516 .. 0.94
   5 !   26.3   0.1     5e-09   8.2e-06      13      55 .]     521     562 ..     518     562 .. 0.95
   6 !   14.7   0.2   2.2e-05     0.036       4      55 .]     594     644 ..     592     644 .. 0.92
   7 !   24.1   0.0   2.4e-08   3.9e-05      13      54 ..     636     676 ..     632     677 .. 0.94

  Alignments for each domain:
  == domain 1  score: 3.2 bits;  conditional E-value: 0.088
       Ank_4   4 aLhyaaisgrlelvrlLlekgad.......................inaqdnrsGetalhiAakrgnveilklLl 55 
                 +Lh+a   +rl+++  Lle+ ad                       +n   ++ G+t +h+ +   ++++l  Ll
  KOO24878.1 280 VLHAAPVVNRLRSLSALLENVADrelpmppelksqleqlghtlrqeLNQA-DELGLTRVHRSVIEQDIDRLDALL 353
                 89999999**********99999998888888888888888888877775.888999999999888888888776 PP

  == domain 2  score: 11.3 bits;  conditional E-value: 0.00024
       Ank_4   6 hyaaisgrlelvrlLlekgadinaqdnrsGetalhiAa 43 
                   +a ++r+ ++++Ll  ga++++  ++ G talh A 
  KOO24878.1 374 SVLAGDQRTACLERLLREGASVDKA-DAKGTTALHAAS 410
                 456669999*******78******8.*********995 PP

  == domain 3  score: 9.2 bits;  conditional E-value: 0.0011
       Ank_4  16 lvrlLlekgadinaqdnrsGetalhiAakrgnveilklLl 55 
                 ++ lLle ga + ++  r G  +lh Aa+ +  e+++ Ll
  KOO24878.1 417 VCTLLLEAGAKPERR-GRKGVRPLHLAAWSNAAEAAEVLL 455
                 5889***********.**************9999999987 PP

  == domain 4  score: 17.7 bits;  conditional E-value: 2.5e-06
       Ank_4   2 ltaLhyaaisgrlelvrlLlekgadinaqdnrsGetalhiAa 43 
                 +ta+h+aa++   e+++ Ll  ga++ +  +++G+ alh+A 
  KOO24878.1 469 RTACHAAAAADAPEALEVLLGGGANVERP-DARGRRALHYAT 509
                 799*************************8.**********96 PP

  == domain 5  score: 26.3 bits;  conditional E-value: 5e-09
       Ank_4  13 rlelvrlLlekgadinaqdnrsGetalhiAakrgnveilklLl 55 
                 r+++++lLl++g++++a+ ++ G++al+ Aa +++v  l+lLl
  KOO24878.1 521 RVRALQLLLDHGVEVDAR-DAGGWSALDVAAEHNRVAPLRLLL 562
                 789***************.****************99888887 PP

  == domain 6  score: 14.7 bits;  conditional E-value: 2.2e-05
       Ank_4   4 aLhyaaisgrlelvrlLlekgadinaqdnrsGetalhiAakrgnveilklLl 55 
                 ++  aa++g  e+ + Ll+ ga i+a  ++ G talh  a + +++ l++L+
  KOO24878.1 594 PIILAAHAGAREATATLLAAGALIDAP-DAFGATALHASAVGAQLKTLQFLV 644
                 56779999999999************8.********************9996 PP

  == domain 7  score: 24.1 bits;  conditional E-value: 2.4e-08
       Ank_4  13 rlelvrlLlekgadinaqdnrsGetalhiAakrgnveilklL 54 
                 +l+++++L++ ga i+ + ++ G++a h+Aa+ g+v +l+ L
  KOO24878.1 636 QLKTLQFLVQAGAAIDVV-DDAGRSAAHYAARSGSVACLRAL 676
                 689***************.999*****************998 PP

>> Dev_Cell_Death  Development and cell death domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.4   0.0   4.6e-20   7.5e-17       1      79 [.      13      95 ..      13     102 .. 0.93

  Alignments for each domain:
  == domain 1  score: 61.4 bits;  conditional E-value: 4.6e-20
  Dev_Cell_Death  1 ggvificnketkkecfrkklfglpaeklslvkkikpgl.kLfLfdyderkLyGvfeAasdGglniepkafts...ekskfpaQ 79
                    ggvif+c+ +t +ec+++ lfglpa+++ +v+ i p++  LfLf++ +r++ G+f+A++  + n+ep+af +    +s+fp Q
      KOO24878.1 13 GGVIFLCDPRTEAECLQRGLFGLPATQTAIVRAIVPETtLLFLFNVRTRHVLGLFRATTWPQQNLEPHAFGEdagGGSRFPLQ 95
                    69********************************9998468*****************************7767778899987 PP

>> Ank_5  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.1   0.1     0.018        29       1      37 [.     388     423 ..     388     426 .. 0.85
   2 !   22.1   0.0   8.5e-08   0.00014       1      41 [.     421     460 ..     421     465 .. 0.94
   3 !   15.4   0.3   1.1e-05     0.018       1      56 []     454     508 ..     454     508 .. 0.97
   4 !   12.9   0.1   6.4e-05      0.11      28      56 .]     521     549 ..     518     570 .. 0.70
   5 !   10.7   0.1   0.00031      0.51      16      54 ..     591     629 ..     581     629 .. 0.89
   6 !    6.5   0.1    0.0067        11       1      36 [.     643     677 ..     643     683 .. 0.83

  Alignments for each domain:
  == domain 1  score: 5.1 bits;  conditional E-value: 0.018
       Ank_5   1 LlehgpadvnrldgggntpLhvAakygaadvvrlLla 37 
                 Ll++g a+v+  d +g+t+Lh A+  + + v+ lLl+
  KOO24878.1 388 LLREG-ASVDKADAKGTTALHAASTLNLPHVCTLLLE 423
                 78899.9*****************9998888877774 PP

  == domain 2  score: 22.1 bits;  conditional E-value: 8.5e-08
       Ank_5   1 LlehgpadvnrldgggntpLhvAakygaadvvrlLlargad 41 
                 Lle+g a + r+ ++g+ pLh+Aa+ +aa+ +++Ll +ga+
  KOO24878.1 421 LLEAG-AKPERRGRKGVRPLHLAAWSNAAEAAEVLLRHGAS 460
                 89999.99****************************99986 PP

  == domain 3  score: 15.4 bits;  conditional E-value: 1.1e-05
       Ank_5   1 LlehgpadvnrldgggntpLhvAakygaadvvrlLlargadlnltdsrGltaldlA 56 
                 Ll+hg a+v   d+++ t+ h Aa + a++ +++Ll  ga+    d+rG+ al++A
  KOO24878.1 454 LLRHG-ASVEGIDKKKRTACHAAAAADAPEALEVLLGGGANVERPDARGRRALHYA 508
                 899**.**********************************************9998 PP

  == domain 4  score: 12.9 bits;  conditional E-value: 6.4e-05
       Ank_5  28 aadvvrlLlargadlnltdsrGltaldlA 56 
                 + + ++lLl++g+  +++d+ G++ald+A
  KOO24878.1 521 RVRALQLLLDHGVEVDARDAGGWSALDVA 549
                 66667777777777777777777777776 PP

  == domain 5  score: 10.7 bits;  conditional E-value: 0.00031
       Ank_5  16 gntpLhvAakygaadvvrlLlargadlnltdsrGltald 54 
                 g  p+++Aa++ga +    Lla ga +++ d+ G tal+
  KOO24878.1 591 GCPPIILAAHAGAREATATLLAAGALIDAPDAFGATALH 629
                 4469*********************************95 PP

  == domain 6  score: 6.5 bits;  conditional E-value: 0.0067
       Ank_5   1 LlehgpadvnrldgggntpLhvAakygaadvvrlLl 36 
                 L+++g a+++  d  g ++ h+Aa+ g+  ++r L 
  KOO24878.1 643 LVQAG-AAIDVVDDAGRSAAHYAARSGSVACLRALR 677
                 78999.77888888888************9999885 PP

>> Ank_3  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.2   0.0      0.51   8.2e+02       3      29 ..     334     359 ..     332     360 .. 0.83
   2 ?   -1.1   0.0       2.9   4.7e+03       5      30 ..     370     396 ..     370     397 .. 0.65
   3 ?    2.7   0.0      0.17   2.8e+02       4      29 ..     404     428 ..     401     429 .. 0.88
   4 !    6.6   0.0    0.0092        15       3      29 ..     436     461 ..     434     463 .. 0.90
   5 ?    3.6   0.0     0.084   1.4e+02       3      29 ..     469     494 ..     467     496 .. 0.90
   6 ?    5.2   0.0     0.026        42       2      30 ..     501     536 ..     500     537 .. 0.71
   7 !   13.0   0.0   7.2e-05      0.12       2      30 ..     542     569 ..     541     570 .. 0.95
   8 ?   -2.5   0.1       8.3   1.3e+04       2      27 ..     591     615 ..     591     619 .. 0.76
   9 ?    5.1   0.0     0.028        46       2      30 ..     624     651 ..     623     652 .. 0.82
  10 !    9.6   0.0   0.00094       1.5       2      28 ..     657     682 ..     656     682 .. 0.88

  Alignments for each domain:
  == domain 1  score: 1.2 bits;  conditional E-value: 0.51
       Ank_3   3 etpLhlAarsgnleivkfLlenkgadv 29 
                  t  h+ +  ++++++++Ll+  gad 
  KOO24878.1 334 LTRVHRSVIEQDIDRLDALLR-AGADY 359
                 56668889999999*******.89995 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 2.9
       Ank_3   5 pLh..lAarsgnleivkfLlenkgadvn 30 
                 pLh  + a  ++++ ++ Ll+  ga v+
  KOO24878.1 370 PLHlsVLAGDQRTACLERLLR-EGASVD 396
                 678334444445557999999.798886 PP

  == domain 3  score: 2.7 bits;  conditional E-value: 0.17
       Ank_3   4 tpLhlAarsgnleivkfLlenkgadv 29 
                 t+Lh A   + + ++ +Lle  ga +
  KOO24878.1 404 TALHAASTLNLPHVCTLLLE-AGAKP 428
                 9************9999999.78865 PP

  == domain 4  score: 6.6 bits;  conditional E-value: 0.0092
       Ank_3   3 etpLhlAarsgnleivkfLlenkgadv 29 
                   pLhlAa s+  e ++ Ll+ +ga v
  KOO24878.1 436 VRPLHLAAWSNAAEAAEVLLR-HGASV 461
                 569******************.8*987 PP

  == domain 5  score: 3.6 bits;  conditional E-value: 0.084
       Ank_3   3 etpLhlAarsgnleivkfLlenkgadv 29 
                 +t+ h Aa ++ +e ++ Ll   ga+v
  KOO24878.1 469 RTACHAAAAADAPEALEVLLG-GGANV 494
                 788899***************.99998 PP

  == domain 6  score: 5.2 bits;  conditional E-value: 0.026
       Ank_3   2 GetpLhlAarsgnl....ei....vkfLlenkgadvn 30 
                 G+ +Lh+A  ++++    ++    +++Ll+ +g++v+
  KOO24878.1 501 GRRALHYATTCCRCadpaCRrvraLQLLLD-HGVEVD 536
                 88999*777777775444114566******.8*9997 PP

  == domain 7  score: 13.0 bits;  conditional E-value: 7.2e-05
       Ank_3   2 GetpLhlAarsgnleivkfLlenkgadvn 30 
                 G+++L +Aa++++++ +++Ll  +gad n
  KOO24878.1 542 GWSALDVAAEHNRVAPLRLLLS-RGADAN 569
                 9*************88******.9***98 PP

  == domain 8  score: -2.5 bits;  conditional E-value: 8.3
       Ank_3   2 GetpLhlAarsgnleivkfLlenkga 27 
                 G+ p+ lAa++g  e    Ll   ga
  KOO24878.1 591 GCPPIILAAHAGAREATATLLA-AGA 615
                 6779999****99987777777.566 PP

  == domain 9  score: 5.1 bits;  conditional E-value: 0.028
       Ank_3   2 GetpLh.lAarsgnleivkfLlenkgadvn 30 
                 G t+Lh  A+ ++  + ++fL++  ga ++
  KOO24878.1 624 GATALHaSAVGAQLKT-LQFLVQ-AGAAID 651
                 89****7777777777.******.899887 PP

  == domain 10  score: 9.6 bits;  conditional E-value: 0.00094
       Ank_3   2 GetpLhlAarsgnleivkfLlenkgad 28 
                 G+++ h+Aarsg+++ +++L e  g+d
  KOO24878.1 657 GRSAAHYAARSGSVACLRALRE-AGVD 682
                 99************98999987.6776 PP

>> Ank  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.3   0.0     0.038        62       5      31 ..     370     399 ..     368     400 .. 0.77
   2 !   15.2   0.1   1.3e-05     0.021       2      27 ..     402     428 ..     401     432 .. 0.91
   3 !   10.2   0.0    0.0005      0.82       5      27 ..     438     461 ..     434     465 .. 0.86
   4 ?    2.8   0.0      0.11   1.8e+02       3      29 ..     469     496 ..     468     499 .. 0.82
   5 !   10.1   0.1   0.00056      0.91       4      31 ..     503     539 ..     500     540 .. 0.76
   6 ?    2.1   0.0      0.18     3e+02       2      27 ..     542     568 ..     541     569 .. 0.75
   7 ?    6.0   0.0     0.011        18       2      31 ..     624     654 ..     623     655 .. 0.77
   8 ?    1.8   0.0      0.24   3.8e+02       2      22 ..     657     677 ..     656     687 .. 0.78

  Alignments for each domain:
  == domain 1  score: 4.3 bits;  conditional E-value: 0.038
                 HHHHHHHHTT..HHHHHHHH.TTTSTTCBT CS
         Ank   5 PLHlAatngk..kriiklLL.hGAnlnald 31 
                 PLHl +  g+  + +++ LL  GA+++  d
  KOO24878.1 370 PLHLSVLAGDqrTACLERLLrEGASVDKAD 399
                 9***88444455559999**88***98766 PP

  == domain 2  score: 15.2 bits;  conditional E-value: 1.3e-05
                 SBBHHHHHHHHTTHHHHHHHH.TTTST CS
         Ank   2 GnTPLHlAatngkkriiklLL.hGAnl 27 
                 G T+LH A+t + ++++ lLL  GA +
  KOO24878.1 402 GTTALHAASTLNLPHVCTLLLeAGAKP 428
                 89*******************889976 PP

  == domain 3  score: 10.2 bits;  conditional E-value: 0.0005
                 HHHHHHHHTTHHHHHHHH.TTTST CS
         Ank   5 PLHlAatngkkriiklLL.hGAnl 27 
                 PLHlAa+ + ++ ++ LL hGA++
  KOO24878.1 438 PLHLAAWSNAAEAAEVLLrHGASV 461
                 ******777799**********87 PP

  == domain 4  score: 2.8 bits;  conditional E-value: 0.11
                 BBHHHHHHHHTTHHHHHHHH.TTTSTTC CS
         Ank   3 nTPLHlAatngkkriiklLL.hGAnlna 29 
                 +T+ H Aa  + ++ ++ LL  GAn+  
  KOO24878.1 469 RTACHAAAAADAPEALEVLLgGGANVER 496
                 5999*999778899******667**865 PP

  == domain 5  score: 10.1 bits;  conditional E-value: 0.00056
                 BHHHHH...HHHTT.....HHHHHHHH.TTTSTTCBT CS
         Ank   4 TPLHlA...atngk.....kriiklLL.hGAnlnald 31 
                  +LH+A   +++++     +r ++lLL hG +++a+d
  KOO24878.1 503 RALHYAttcCRCADpacrrVRALQLLLdHGVEVDARD 539
                 59***85442444466677999*****9*******99 PP

  == domain 6  score: 2.1 bits;  conditional E-value: 0.18
                 SBBHHHHHHHHTTHHHHHHHH.TTTST CS
         Ank   2 GnTPLHlAatngkkriiklLL.hGAnl 27 
                 G+++L +Aa  + +  ++lLL +GA+ 
  KOO24878.1 542 GWSALDVAAEHNRVAPLRLLLsRGADA 568
                 999******667444558899779985 PP

  == domain 7  score: 6.0 bits;  conditional E-value: 0.011
                 SBBHHHHHHHHTTHHHHHHHH.TTTSTTCBT CS
         Ank   2 GnTPLHlAatngkkriiklLL.hGAnlnald 31 
                 G T+LH  a ++++  +++L+  GA ++ +d
  KOO24878.1 624 GATALHASAVGAQLKTLQFLVqAGAAIDVVD 654
                 78****766466666******6698799888 PP

  == domain 8  score: 1.8 bits;  conditional E-value: 0.24
                 SBBHHHHHHHHTTHHHHHHHH CS
         Ank   2 GnTPLHlAatngkkriiklLL 22 
                 G+++ H+Aa+ g++ ++++L 
  KOO24878.1 657 GRSAAHYAARSGSVACLRALR 677
                 77888****99*999998885 PP

>> Trypsin_2  Trypsin-like peptidase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.6   0.0   2.3e-08   3.8e-05      75     149 ..    1231    1299 ..    1215    1299 .. 0.86

  Alignments for each domain:
  == domain 1  score: 24.6 bits;  conditional E-value: 2.3e-08
   Trypsin_2   75 lgpsealkggepvyvvGyplggeksgsvssGivsgvvesesaasgegesflqtdaatspGsSGGplfdsdGrvvG 149 
                  lg+++ ++   +++ +Gyplgg++ ++ ++G++ g  +       e+ ++l+ +  + pG+SGGp++d++G vv+
  KOO24878.1 1231 LGDEQRTHHLYRLFSLGYPLGGGDTPTPTFGEYVGPHH------DEHGNWLKFQGLVMPGHSGGPVLDERGVVVA 1299
                  556665555569999****9999999************......*****************************97 PP

>> HHH_2  Helix-hairpin-helix motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   0.00026      0.42      18      46 ..     240     268 ..     236     269 .. 0.93
   2 ?   -3.0   0.0       5.1   8.3e+03      25      44 ..     314     333 ..     313     341 .. 0.85

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00026
       HHH_2  18 lLakrFksldaLkkasleeLlevddiGee 46 
                 +L +rF+sl  + +a++eeL++ ++ G++
  KOO24878.1 240 TLHTRFGSLASILSATEEELTACPGLGDR 268
                 6899**********************985 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 5.1
       HHH_2  25 sldaLkkasleeLlevddiG 44 
                 +l++L ++  +eL + d+ G
  KOO24878.1 314 QLEQLGHTLRQELNQADELG 333
                 58999999999999999998 PP

>> HHH_5  Helix-hairpin-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   0.00027      0.44      15      46 ..     238     268 ..     230     270 .. 0.83
   2 ?   -2.9   0.6       6.7   1.1e+04      13      39 ..    1543    1567 ..    1537    1568 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00027
                 HHHHHTTT--SHHHHHHS-HHHHHTSTTS-HH CS
       HHH_5  15 AlallsaGiesvedlaaadveeLakipGiGkk 46 
                 + +l+   ++s++ +++a++eeL++ pG+G +
  KOO24878.1 238 VATLHTR-FGSLASILSATEEELTACPGLGDR 268
                 5556666.99********************86 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 6.7
                  HHHHHHHTTT--SHHHHHHS-HHHHHT CS
       HHH_5   13 ktAlallsaGiesvedlaaadveeLak 39  
                  +  +++ls+  +s  + aaa+++++a+
  KOO24878.1 1543 ASLRRMLSH--TSASEAAAASEAAIAR 1567
                  567899***..9999999999999986 PP

>> Csm1_N  Csm1 N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   5.1   0.00032      0.52      22      69 ..     684     731 ..     678     732 .. 0.93
   2 ?    3.6   0.5     0.054        87      18      66 ..     839     887 ..     835     891 .. 0.85

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00032
      Csm1_N  22 vsklvhENsvLsqkletkdqeiesLkeqlaeleekvkeleerrkkqeE 69 
                 v++l +E + L +kl++++ ei +Lk+ l+ + ek +++e r++++ E
  KOO24878.1 684 VTQLREERVSLIEKLDNQKYEIVELKKALQVAAEKQQQAEARADESDE 731
                 7888899999********************************999988 PP

  == domain 2  score: 3.6 bits;  conditional E-value: 0.054
      Csm1_N  18 AdllvsklvhENsvLsqkletkdqeiesLkeqlaeleekvkeleerrkk 66 
                 A+ + +  + EN+ L+++l  +++     + + +++e+++++  +r+++
  KOO24878.1 839 AEDALAIAISENRFLTERLAHQTTLAADEQTRREAAEQRCAQVAQRADD 887
                 556667789**************99999999999999999999988876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1621 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1461  (0.0814881); expected 358.6 (0.02)
Passed bias filter:                      561  (0.0312901); expected 358.6 (0.02)
Passed Vit filter:                        68  (0.00379274); expected 17.9 (0.001)
Passed Fwd filter:                        13  (0.000725082); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 1.10u 0.33s 00:00:01.43 Elapsed: 00:00:00.51
# Mc/sec: 9496.63
//
Query:       KOO24879.1  [L=379]
Description: hypothetical protein Ctob_004149 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
      2e-09   37.1   0.2      4e-09   36.2   0.2    1.5  1  PDZ_6         PDZ domain
    9.4e-08   32.3   0.0    1.8e-07   31.4   0.0    1.5  1  PDZ           PDZ domain
    0.00015   22.0   0.0    0.00035   20.9   0.0    1.6  1  PDZ_2         PDZ domain
  ------ inclusion threshold ------
        1.3    9.5   7.3       0.32   11.5   2.4    2.2  2  CRISPR_Cse2   CRISPR-associated protein Cse2 (CRISPR_cse2)
        1.7    9.4   4.2       0.75   10.6   0.2    2.3  2  Glyoxalase_6  Glyoxalase-like domain


Domain annotation for each model (and alignments):
>> PDZ_6  PDZ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.2   0.2   1.1e-12     4e-09       1      56 []      34      87 ..      34      87 .. 0.92

  Alignments for each domain:
  == domain 1  score: 36.2 bits;  conditional E-value: 1.1e-12
       PDZ_6  1 vVtaVdpgsPAdrAGlrvGDiilsvNGqpveglsladvaallrgsagesvvlvvrr 56
                vV+a  pg+ A+ +G+ +GD +ls++G+p    s  ++a++lr+s g+  v v rr
  KOO24879.1 34 VVKALAPGGRAEICGILAGDEVLSIGGTPY--ASALEAARALRESDGSVNVRVERR 87
                69999*************************..***********8888877777665 PP

>> PDZ  PDZ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.4   0.0     5e-11   1.8e-07       3      81 ..      10      84 ..       8      85 .. 0.88

  Alignments for each domain:
  == domain 1  score: 31.4 bits;  conditional E-value: 5e-11
                EEETS.TTSESSEEEEEETTSSSSSSEEEEEECTTSHHHHHTSSTTEEEEEETTEETTTSHHHHHHHHHHTTTSEEEEEE CS
         PDZ  3 sleke.grgglGfslkggsdqrgdkgifvsevlpggaaeadglkvGDkIlsvNgvdvenvsheeavqaikgskgkvtLti 81
                ++ k  +  +lG+sl+ g+++   + ++v+ + pgg ae  g+ +GD++ls++g++ ++   +ea+ a+++s g+v + +
  KOO24879.1 10 TVFKHtRDDRLGISLETGDKE---NVVVVKALAPGGRAEICGILAGDEVLSIGGTPYASA--LEAARALRESDGSVNVRV 84
                566666999********9998...5**********9999999***************998..999999999999887765 PP

>> PDZ_2  PDZ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.9   0.0   9.6e-08   0.00035       3      72 ..      20      87 ..      18      92 .. 0.84

  Alignments for each domain:
  == domain 1  score: 20.9 bits;  conditional E-value: 9.6e-08
                ..XX------..-EEEEEE-TTSGGGGT.--TT-EEEEETTB--SSHHHHHHHHHTS-TT-EEEEEEEET CS
       PDZ_2  3 lGvsvsdeedtggvlvvsVkeggPaakaglkagDvilkvdgkkvksledlislllkkkpGdtVkltvlRd 72
                lG+s++  ++++ v+v    +gg a+  g+ agD++l+++g++  s  +  ++l++   +  V+++v+R+
  KOO24879.1 20 LGISLETGDKENVVVVKALAPGGRAEICGILAGDEVLSIGGTPYASALEAARALRE--SDGSVNVRVERR 87
                99***9999866777777**************************888888887764..456788888886 PP

>> CRISPR_Cse2  CRISPR-associated protein Cse2 (CRISPR_cse2)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   2.4     9e-05      0.32       5      96 ..     150     255 ..     149     270 .. 0.75
   2 ?   -0.0   0.3      0.32   1.2e+03      62      86 ..     310     333 ..     256     356 .. 0.66

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 9e-05
                  HHHHCTSSTTTCGGH.HHHHHHH..TTTT.HHHHHHHHHHHHHHHHHCCHC........S-SB.-TT-CHHHHHHHHHHHTCTHHHHHHHHHHHCT-S CS
  CRISPR_Cse2   5 LRrgagkepgespel.wpyllre..keseeekepeeraayavaalyaahqq........ekeh.dsgkslgaalgrlreasessesierRfqalltad 90 
                  LR ++ +++++ +++ + + ++e   + + e+ ++ + ++ ++a+ya++q+        ++e+ d+++   aal  + +++++ e +  R+++l+ +d
   KOO24879.1 150 LRECQEETADALVQSmLAIREPEppSDADMEDPEAMQLYMEAMAVYAQQQRnrlteldgAQEAiDENRDASAALLLCTTRRQELEVLLGRVHTLTEQD 247
                  89999888877775535555555887788999***********************9999777778888877777766655555467999*****9877 PP

                  ..SCCCHH CS
  CRISPR_Cse2  91 ..tpeela 96 
                      ee++
   KOO24879.1 248 aeRIEEIW 255
                  22444444 PP

  == domain 2  score: -0.0 bits;  conditional E-value: 0.32
                  HHHHHHHHHHHTCTHHHHHHHHHHH CS
  CRISPR_Cse2  62 lgaalgrlreasessesierRfqal 86 
                    +al rlre+s++   + +R+q+ 
   KOO24879.1 310 PSSALERLREHSKH-VRLNQRLQRA 333
                  66788888877777.7777887765 PP

>> Glyoxalase_6  Glyoxalase-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   0.5      0.65   2.3e+03      31      45 ..     179     185 ..     121     232 .. 0.52
   2 ?   10.6   0.2   0.00021      0.75       4      78 ..     243     319 ..     240     336 .. 0.72

  Alignments for each domain:
  == domain 1  score: -0.6 bits;  conditional E-value: 0.65
  Glyoxalase_6  31 ledpegvgpaaedaa 45 
                   +edp        +a+
    KOO24879.1 179 MEDP--------EAM 185
                   2222........222 PP

  == domain 2  score: 10.6 bits;  conditional E-value: 0.00021
  Glyoxalase_6   4 ldaadpaalaaFwaaalgwevereeaaledpegvgpaaedaatllfqrvpe.....paknrvHldlavedldaevarlva 78 
                   l  +d++++ + w+++ g+  ++e+   ++++g +  ++da   l+ ++ +     +   r H  l+v+++  + +rl +
    KOO24879.1 243 LTEQDAERIEEIWQELSGGLEDEEA--DVQEQGEEQ-GDDADESLILEATKlalgsRSCPRSHAQLHVPEPSSALERLRE 319
                   66789************55555555..233333333.455555555566666777633339***************9976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (379 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       798  (0.0445089); expected 358.6 (0.02)
Passed bias filter:                      460  (0.0256568); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.51u 0.26s 00:00:00.77 Elapsed: 00:00:00.42
# Mc/sec: 2681.19
//
Query:       KOO24880.1  [L=225]
Description: cysteine-rich domain-containing protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.5e-05   24.1  14.8    0.00013   22.2  14.8    2.0  1  DnaJ_CXXCXGXG   DnaJ central domain
     0.0019   18.2  11.0       0.58   10.2   8.1    3.2  2  Anti-TRAP       Tryptophan RNA-binding attenuator protein inh
     0.0053   17.0   1.1     0.0097   16.1   1.1    1.3  1  zf-4CXXC_R1     Zinc-finger domain of monoamine-oxidase A rep
  ------ inclusion threshold ------
      0.021   15.1   1.7      0.033   14.5   1.7    1.3  1  FpoO            F420H2 dehydrogenase subunit FpoO
       0.19   11.6   0.1       0.19   11.6   0.1    2.1  2  PyrI_C          Aspartate carbamoyltransferase regulatory cha
       0.33   10.2   6.4       0.53    9.5   1.6    2.2  2  DUF1356         Protein of unknown function (DUF1356)
       0.41   11.0  13.2          2    8.7   0.3    2.9  2  Prim_Zn_Ribbon  Zinc-binding domain of primase-helicase
        1.9    8.5   6.5         28    4.8   6.7    2.1  1  HypA            Hydrogenase/urease nickel incorporation, meta
        5.1    7.4  18.6         12    6.2   0.7    4.2  3  DUF5351         Family of unknown function (DUF5351)


Domain annotation for each model (and alignments):
>> DnaJ_CXXCXGXG  DnaJ central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.2  14.8   6.5e-08   0.00013       1      67 []     122     174 ..     108     174 .. 0.83

  Alignments for each domain:
  == domain 1  score: 22.2 bits;  conditional E-value: 6.5e-08
  DnaJ_CXXCXGXG   1 CkkCkGsgakkgkkktCktCkGsGvvreeqktlgp..fvqqsqstCpeCeGtGkvikekdkCkkCkGkg 67 
                    C+ C+Gsg+       C +C GsG+ ++     g   +   ++++Cp+CeGtG+v+     C +C+G+g
     KOO24880.1 122 CSYCEGSGQ-----ILCGHCLGSGTLSVM----GAdgVL--TSMQCPNCEGTGTVV-----CINCQGSG 174
                    9*******5.....67********54332....222133..4689*********99.....******86 PP

>> Anti-TRAP  Tryptophan RNA-binding attenuator protein inhibitory protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.2   8.1   0.00029      0.58      13      42 ..     133     165 ..     118     169 .. 0.78
   2 ?    3.6   0.1     0.033        66      12      25 ..     166     179 ..     164     185 .. 0.80

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.00029
                 -TTTTTTSEETTE.........E-TTTTTSSEE CS
   Anti-TRAP  13 CdaCngsGkiepe...eprasleCPkCsGkgli 42 
                 C +C gsG           +s++CP+C+G g +
  KOO24880.1 133 CGHCLGSGTLSVMgadGVLTSMQCPNCEGTGTV 165
                 88888888766555444568*********9976 PP

  == domain 2  score: 3.6 bits;  conditional E-value: 0.033
                 E-TTTTTTSEETTE CS
   Anti-TRAP  12 kCdaCngsGkiepe 25 
                  C +C+gsG   p+
  KOO24880.1 166 VCINCQGSGLSVPD 179
                 69999999977665 PP

>> zf-4CXXC_R1  Zinc-finger domain of monoamine-oxidase A repressor R1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   1.1   4.9e-06    0.0097      13      71 ..     112     170 ..     104     185 .. 0.85

  Alignments for each domain:
  == domain 1  score: 16.1 bits;  conditional E-value: 4.9e-06
  zf-4CXXC_R1  13 rqktletktsCkakeCksaklkfCekClknRygeeveevaakkeWvCPkCrg.....iCncslc 71 
                  ++k+++++ +C  + C+ +   +C++Cl       + +    ++ +CP+C g     +    +c
   KOO24880.1 112 KKKEVKDRLKC--SYCEGSGQILCGHCLGSGTLSVMGADGVLTSMQCPNCEGtgtvvC---INC 170
                  67889999999..9******************999999999*********99775532...333 PP

>> FpoO  F420H2 dehydrogenase subunit FpoO
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.5   1.7   1.7e-05     0.033       7      70 ..     103     166 ..      99     190 .. 0.83

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 1.7e-05
        FpoO   7 cgvsiPtviPvrvfkPrlelsyPeGvwkGlcekclkaakktydelskeeasgtaGkcdlcgkkt 70 
                  g+ + t++  + +k rl+ sy eG  + lc +cl + + ++   +   +s++  +c+  g++ 
  KOO24880.1 103 VGTVVSTMLKKKEVKDRLKCSYCEGSGQILCGHCLGSGTLSVMGADGVLTSMQCPNCEGTGTVV 166
                 57778899999999***********************999999888888888888888777764 PP

>> PyrI_C  Aspartate carbamoyltransferase regulatory chain, metal binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.1   9.7e-05      0.19      25      40 ..     111     126 ..     103     130 .. 0.78
   2 ?   -1.7   0.6       1.4   2.7e+03       6      39 ..     154     159 ..     148     170 .. 0.68

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 9.7e-05
                 EEEETTTTEEEETTT- CS
      PyrI_C  25 kvedkekvklkCkYCe 40 
                   +++ k +lkC YCe
  KOO24880.1 111 LKKKEVKDRLKCSYCE 126
                 3478999********9 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 1.4
                 S--S-TTBGGGTTS-.-EEEEEETTTTEEEETTT CS
      PyrI_C   6 lkCpNpnCItnnepveskFkvedkekvklkCkYC 39 
                 ++CpN                            C
  KOO24880.1 154 MQCPN----------------------------C 159
                 44555............................4 PP

>> DUF1356  Protein of unknown function (DUF1356)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.3   0.2     0.021        42      15      43 ..     113     141 ..     104     145 .. 0.65
   2 ?    9.5   1.6   0.00027      0.53      15      47 ..     147     180 ..     141     186 .. 0.81

  Alignments for each domain:
  == domain 1  score: 3.3 bits;  conditional E-value: 0.021
     DUF1356  15 skedvsqvpyveatgrdsvtCptCqGtGe 43 
                 +ke   ++ +    g++ + C  C G+G+
  KOO24880.1 113 KKEVKDRLKCSYCEGSGQILCGHCLGSGT 141
                 44555556666667777777777777775 PP

  == domain 2  score: 9.5 bits;  conditional E-value: 0.00027
     DUF1356  15 skedvsqvpyveatgrdsvtCptCqGtG.eiPre 47 
                  +  ++ + + +  g++ v+C  CqG+G ++P e
  KOO24880.1 147 ADGVLTSMQCPNCEGTGTVVCINCQGSGlSVPDE 180
                 5667888999999***************557776 PP

>> Prim_Zn_Ribbon  Zinc-binding domain of primase-helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.7   0.3     0.001         2      12      35 ..     117     140 ..     116     150 .. 0.84
   2 ?    4.2   7.4     0.026        52      18      35 ..     157     174 ..     153     177 .. 0.85

  Alignments for each domain:
  == domain 1  score: 8.7 bits;  conditional E-value: 0.001
                     TTTEEETT....S-EEETTTTBXX CS
  Prim_Zn_Ribbon  12 rDrFrfddkdgrGtwfCrqCgggg 35 
                     +Dr +++  +g+G   C +C g+g
      KOO24880.1 117 KDRLKCSYCEGSGQILCGHCLGSG 140
                     799999999***********6655 PP

  == domain 2  score: 4.2 bits;  conditional E-value: 0.026
                     TT....S-EEETTTTBXX CS
  Prim_Zn_Ribbon  18 ddkdgrGtwfCrqCgggg 35 
                     +  +g+Gt +C  C+g+g
      KOO24880.1 157 PNCEGTGTVVCINCQGSG 174
                     6668**********8866 PP

>> HypA  Hydrogenase/urease nickel incorporation, metallochaperone, hypA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.8   6.7     0.014        28      55     110 ..     105     154 ..      64     177 .. 0.67

  Alignments for each domain:
  == domain 1  score: 4.8 bits;  conditional E-value: 0.014
                 .TTTT-EEEEEEE--EEEETTTS-EEECHHHHHS-TTTSSS-EEEEESSSEEEEEE CS
        HypA  55 tvlegaeLeieevpvkvrCreCgkefeleekalrCpkCgsadveivsGeellvksi 110
                 tv++ + L+ +ev+ +++C+ C+ ++++      C++C ++++  v G +  ++s+
  KOO24880.1 105 TVVS-TMLKKKEVKDRLKCSYCEGSGQI-----LCGHCLGSGTLSVMGADGVLTSM 154
                 4444.66778888888888888866663.....35555555555555544444444 PP

>> DUF5351  Family of unknown function (DUF5351)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.7   5.8     0.037        74       1      12 [.     122     131 ..     122     142 .. 0.69
   2 ?    6.2   0.7    0.0059        12      20      28 ..     156     164 ..     152     165 .. 0.86
   3 ?    2.4   0.2      0.09   1.8e+02      20      27 ..     167     174 ..     166     176 .. 0.84

  Alignments for each domain:
  == domain 1  score: 3.7 bits;  conditional E-value: 0.037
     DUF5351   1 CpYCeGkGYfqL 12 
                 C+YCeG G  q+
  KOO24880.1 122 CSYCEGSG--QI 131
                 89999988..44 PP

  == domain 2  score: 6.2 bits;  conditional E-value: 0.0059
     DUF5351  20 CesCeGtgk 28 
                 C+ CeGtg+
  KOO24880.1 156 CPNCEGTGT 164
                 999999997 PP

  == domain 3  score: 2.4 bits;  conditional E-value: 0.09
     DUF5351  20 CesCeGtg 27 
                 C  C+G+g
  KOO24880.1 167 CINCQGSG 174
                 89999998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (225 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       552  (0.0307881); expected 358.6 (0.02)
Passed bias filter:                      372  (0.0207485); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                        13  (0.000725082); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.47u 0.24s 00:00:00.71 Elapsed: 00:00:00.42
# Mc/sec: 1624.01
//
Query:       KOO24881.1  [L=459]
Description: hypothetical protein Ctob_004146 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    5.9e-13   48.3  18.7    3.3e-12   45.8  18.7    1.8  1  TFIIF_alpha     Transcription initiation factor IIF, alpha su


Domain annotation for each model (and alignments):
>> TFIIF_alpha  Transcription initiation factor IIF, alpha subunit (TFIIF-alpha)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.8  18.7   1.8e-16   3.3e-12      96     511 ..      50     435 ..      41     449 .. 0.58

  Alignments for each domain:
  == domain 1  score: 45.8 bits;  conditional E-value: 1.8e-16
                  TSXEEEEESSTTS..EEEEEEEX..SSSSSSEEEEEEEE.ETTSE.EEEEEEEEEEEEEEGGCSTXXSSTTTHHHHHHHXSSSXSHHHHHHXXXXXX. CS
  TFIIF_alpha  96 dqPWiLevggkeggqkkfrGire..Ggvsenasyyvltk.apdga.feAypvneWynFnpvaryktLtleeAEeeferRkktlngfslmlkkalkkge 189
                  +q  +L++g      k++ G re  G  ++++s yv ++  + +  +   p+  Wy F+p ++++tL +++AE     + + + + ++ lkk  +k+ 
   KOO24881.1  50 EQGMLLQAG-----GKRYEGTREmvGVGADQSSDYVVVRrDARNGvMTITPLAAWYTFRPSITHRTLGIDDAEALLAAKDRKALKAEMKLKKLTQKD- 141
                  555566633.....367777777554334445555555413333358999***********************999887777766665555555444. PP

                  ....XXXXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX....XXXXXXXXXXXXX.XXXXXXXXXXXXXXXX CS
  TFIIF_alpha 190 aavgdedeeeekkkgggGrskdLkikdkegddeedsdesdkgdededeekkkkKkkkkaknkkkldddkkkkrgsdddadeydsddGddegrEldyis 287
                    v d++e   +    gGr+    + d   dd +d+      d d  ++++ +K   ++++ k+    + ++ g d ++de+     dd + E ++ +
   KOO24881.1 142 --VDDDEEAGGGGL--GGRGGAGGMLDA--DDFDDGAGP---DWDHHQQVEFNK-YSHGLGDKD----EDGNDGLDMEDDEFR---ADDDEDEGIFDD 222
                  ..334433333333..444432334444..333333333...334455555556.778999998....445555555555544...445555667766 PP

                  XXXXXXXXXX.................XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.....XXXXXXXXXXXXX CS
  TFIIF_alpha 288 Ddsasendpe.................eredkkseEeeekkeieqdedeeekeeekkeeegklskkkkkakklkkkkkek...dkkdSddeedsddsD 365
                  D+++  +                    e+ed  ++E  +      +e++++++++ + +  + s + +++k+++  +++    d++ S de+d+d  D
   KOO24881.1 223 DEQEGLQG-RlqaqhtrasmrnpgsavEHED--DPEALAAAAAAAQEEDDDSDDDRRLQR-GISDHLRRTKEDLRAERRAmraDEDGS-DEDDEDPLD 315
                  65554433.2477888999999998666666..888888888888788888887775554.566666666665554444400044444.444444444 PP

                  XXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXX..XXXXXX...XXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXX-S CS
  TFIIF_alpha 366 ideedsvslvkakKkkekkkeekvdsnessagnsrparpspeqkdskskrkaaseeskspvsvpaKklktenapkssskkslpqtvsksksssnkadg 463
                     e+   ++ a  +          ++e+ a++++ a  s++   + +kr ++   + +    +aK++++ ++        +++  ++     +++  
   KOO24881.1 316 EGAEALRRILSAGQPVA------EADAEADAAPAGAAGASAT--GAGGKRPLSPSAAAEE---AAKRARLAKE--------TAAQLAR-----SQQRR 389
                  44444434343333222......2234444555555555554..3357777733222222...2555555433........3333333.....55666 PP

                  S--HHHHHHHHH.HS-B-HHHHHHHTSHHHHSS-HHHHHHHHHHHHHHH CS
  TFIIF_alpha 464 gvtEeavrryLm.rkplTtkeLlkkfkakktglsseelvealaqiLkri 511
                     E ++   L  +  l +keL+++fk     +s++e+ e++ +i k++
   KOO24881.1 390 RFEERDIVMLLHeKGKLPIKELIRHFKPL---ISCKEDQEEFLKIVKQV 435
                  77788888888867778888888888888...88888888888888875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (459 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       951  (0.0530426); expected 358.6 (0.02)
Passed bias filter:                      409  (0.0228122); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.58u 0.29s 00:00:00.86 Elapsed: 00:00:00.42
# Mc/sec: 3257.63
//
Query:       KOO24882.1  [L=92]
Description: putative calcium-binding protein cml14-like protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.9e-15   54.6   0.1    1.6e-07   30.4   0.0    2.1  2  EF-hand_1     EF hand
    8.7e-14   51.1   0.9    4.8e-10   39.1   0.2    2.1  2  EF-hand_8     EF-hand domain pair
    3.6e-12   45.2   0.1    8.5e-06   25.3   0.1    2.2  2  EF-hand_6     EF-hand domain
    2.4e-11   43.9   0.1    3.1e-11   43.6   0.1    1.2  1  EF-hand_7     EF-hand domain pair
    4.9e-10   38.4   0.0     0.0011   18.4   0.0    2.2  2  EF-hand_5     EF hand
    1.7e-05   24.6   0.3    0.00041   20.2   0.0    2.1  2  EF-hand_10    EF hand
     0.0013   18.6   0.0       0.33   10.9   0.0    2.1  2  EF-hand_4     Cytoskeletal-regulatory complex EF hand
     0.0014   18.6   0.0     0.0021   18.1   0.0    1.2  1  TerB          Tellurite resistance protein TerB
  ------ inclusion threshold ------
      0.026   14.8   0.1       0.61   10.4   0.0    2.1  2  SPARC_Ca_bdg  Secreted protein acidic and rich in cysteine Ca
       0.16   12.2   0.0        1.3    9.3   0.0    2.0  2  Dockerin_1    Dockerin type I domain


Domain annotation for each model (and alignments):
>> EF-hand_1  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.7   0.0   2.6e-08   4.6e-05       2      27 ..      18      43 ..      17      45 .. 0.91
   2 !   30.4   0.0     9e-11   1.6e-07       2      27 ..      55      80 ..      54      82 .. 0.92

  Alignments for each domain:
  == domain 1  score: 22.7 bits;  conditional E-value: 2.6e-08
                HHHHHHHHTTTSSSEEEHHHHHHHHH CS
   EF-hand_1  2 lkeiFrefDkDgdGkIdfeEfkellk 27
                lke+F   D+ gdG+Id  Efk + +
  KOO24882.1 18 LKELFTRCDTSGDGRIDATEFKVAYR 43
                89********************9866 PP

  == domain 2  score: 30.4 bits;  conditional E-value: 9e-11
                HHHHHHHHTTTSSSEEEHHHHHHHHH CS
   EF-hand_1  2 lkeiFrefDkDgdGkIdfeEfkellk 27
                + ei+r fD +g+G+I+feEf+e+l+
  KOO24882.1 55 CAEIIRGFDANGSGTIEFEEFCEALA 80
                679********************986 PP

>> EF-hand_8  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.0   3.7e-06    0.0066      30      51 ..      20      41 ..       7      44 .. 0.89
   2 !   39.1   0.2   2.7e-13   4.8e-10       2      52 ..      30      79 ..      29      80 .. 0.93

  Alignments for each domain:
  == domain 1  score: 16.3 bits;  conditional E-value: 3.7e-06
   EF-hand_8 30 ilfrefDtdgdGkisfeEFcvl 51
                +lf + Dt gdG+i+ +EF v 
  KOO24882.1 20 ELFTRCDTSGDGRIDATEFKVA 41
                79*****************997 PP

  == domain 2  score: 39.1 bits;  conditional E-value: 2.7e-13
   EF-hand_8  2 kgkItreelrrilrilglkkglseeevdilfrefDtdgdGkisfeEFcvll 52
                +g I+ +e++ ++r++    +l  +++ +++r fD +g+G+i feEFc+ l
  KOO24882.1 30 DGRIDATEFKVAYRLFSSD-DLPLNDCAEIIRGFDANGSGTIEFEEFCEAL 79
                89*************9755.5***************************976 PP

>> EF-hand_6  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.3   0.1   4.7e-09   8.5e-06       1      27 [.      17      43 ..      17      49 .. 0.92
   2 !   18.0   0.0     1e-06    0.0018       7      27 ..      60      80 ..      54      86 .. 0.89

  Alignments for each domain:
  == domain 1  score: 25.3 bits;  conditional E-value: 4.7e-09
   EF-hand_6  1 elreaFklfDkdgdGkidaeElrkalr 27
                +l+e+F   D++gdG ida E++ a+r
  KOO24882.1 17 RLKELFTRCDTSGDGRIDATEFKVAYR 43
                689********************9998 PP

  == domain 2  score: 18.0 bits;  conditional E-value: 1e-06
   EF-hand_6  7 klfDkdgdGkidaeElrkalr 27
                + fD +g+G+i +eE+  al 
  KOO24882.1 60 RGFDANGSGTIEFEEFCEALA 80
                67***************9996 PP

>> EF-hand_7  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.6   0.1   1.7e-14   3.1e-11       2      69 ..      16      78 ..      15      80 .. 0.85

  Alignments for each domain:
  == domain 1  score: 43.6 bits;  conditional E-value: 1.7e-14
   EF-hand_7  2 eklkeaFkelDtdgdgyldkeellrllrkifqgagegsklsdeelellfkefDtdkdGvisfdEFlkl 69
                 +lke F   Dt gdg++d +e++ ++r ++   + + +l d    ++++ fD +++G+i f+EF+++
  KOO24882.1 16 ARLKELFTRCDTSGDGRIDATEFKVAYRLFS---SDDLPLND--CAEIIRGFDANGSGTIEFEEFCEA 78
                689*********************7777443...55555555..99********************98 PP

>> EF-hand_5  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.1   0.0   7.3e-07    0.0013       1      22 [.      18      39 ..      18      44 .. 0.89
   2 !   18.4   0.0     6e-07    0.0011       8      21 ..      62      75 ..      58      80 .. 0.91

  Alignments for each domain:
  == domain 1  score: 18.1 bits;  conditional E-value: 7.3e-07
                HHHHHHHH-SS-SSCE-HHHHH CS
   EF-hand_5  1 lkdtFqaiDlNgDGkIskeELk 22
                lk++F + D+ gDG+I++ E+k
  KOO24882.1 18 LKELFTRCDTSGDGRIDATEFK 39
                67789999*************7 PP

  == domain 2  score: 18.4 bits;  conditional E-value: 6e-07
                H-SS-SSCE-HHHH CS
   EF-hand_5  8 iDlNgDGkIskeEL 21
                +D+Ng+G+I +eE+
  KOO24882.1 62 FDANGSGTIEFEEF 75
                9************9 PP

>> EF-hand_10  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.2   0.0   2.3e-07   0.00041      25      49 ..      20      44 ..      16      45 .. 0.92
   2 ?    2.8   0.1     0.061   1.1e+02      41      50 .]      70      79 ..      57      79 .. 0.81

  Alignments for each domain:
  == domain 1  score: 20.2 bits;  conditional E-value: 2.3e-07
  EF-hand_10 25 kLFkkcDkSksgrLegeEieeFykl 49
                +LF +cD+S +gr++  E++  y+l
  KOO24882.1 20 ELFTRCDTSGDGRIDATEFKVAYRL 44
                8*******************99986 PP

  == domain 2  score: 2.8 bits;  conditional E-value: 0.061
  EF-hand_10 41 eEieeFyklL 50
                 E+eeF++ L
  KOO24882.1 70 IEFEEFCEAL 79
                5899999876 PP

>> EF-hand_4  Cytoskeletal-regulatory complex EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.9   0.0   0.00018      0.33      40      71 ..      13      44 ..       4      50 .. 0.88
   2 !    6.4   0.0    0.0049       8.7      42      68 ..      52      78 ..      44      81 .. 0.76

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00018
   EF-hand_4 40 leedklekiwdladidedgkldfeefciamrl 71
                ++  +l+++++ +d   dg++d  ef +a rl
  KOO24882.1 13 VTRARLKELFTRCDTSGDGRIDATEFKVAYRL 44
                56789999**********************98 PP

  == domain 2  score: 6.4 bits;  conditional E-value: 0.0049
   EF-hand_4 42 edklekiwdladidedgkldfeefcia 68
                 +  ++i    d +  g+++feefc a
  KOO24882.1 52 LNDCAEIIRGFDANGSGTIEFEEFCEA 78
                5556667777799999*********76 PP

>> TerB  Tellurite resistance protein TerB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.1   0.0   1.1e-06    0.0021      41      98 ..      30      85 ..      27      90 .. 0.91

  Alignments for each domain:
  == domain 1  score: 18.1 bits;  conditional E-value: 1.1e-06
        TerB 41 DgqvsesErqafrellksrfglspeeakallelfeeaeeeavdleqftralkrklspe 98
                Dg++++ E +   +l+ s+++l+  + +++++ f++  + ++++e+f++al+  ++  
  KOO24882.1 30 DGRIDATEFKVAYRLF-SSDDLPLNDCAEIIRGFDANGSGTIEFEEFCEALAP-FRAS 85
                9***************.********************************9987.5544 PP

>> SPARC_Ca_bdg  Secreted protein acidic and rich in cysteine Ca binding region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.0   0.00034      0.61      91     110 ..      19      38 ..       7      41 .. 0.90
   2 ?    2.8   0.1     0.081   1.5e+02      89     112 ..      55      77 ..      46      78 .. 0.82

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00034
  SPARC_Ca_bdg  91 kpflescDadkdkkislkEw 110
                   k+++++cD+  d++i+++E+
    KOO24882.1  19 KELFTRCDTSGDGRIDATEF 38 
                   789****************9 PP

  == domain 2  score: 2.8 bits;  conditional E-value: 0.081
  SPARC_Ca_bdg  89 CikpflescDadkdkkislkEwce 112
                   C  + ++  Da+  ++i+ +E+ce
    KOO24882.1  55 CA-EIIRGFDANGSGTIEFEEFCE 77 
                   53.567888*************97 PP

>> Dockerin_1  Dockerin type I domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3   0.0    0.0007       1.3      35      50 ..      23      38 ..      13      42 .. 0.86
   2 ?    0.6   0.0      0.36   6.5e+02      37      45 ..      62      70 ..      54      72 .. 0.72

  Alignments for each domain:
  == domain 1  score: 9.3 bits;  conditional E-value: 0.0007
                GGGSTT-SSCESHHHH CS
  Dockerin_1 35 kaaDvNgDGrvnalDa 50
                + +D +gDGr++a+ +
  KOO24882.1 23 TRCDTSGDGRIDATEF 38
                678**********986 PP

  == domain 2  score: 0.6 bits;  conditional E-value: 0.36
                GSTT-SSCE CS
  Dockerin_1 37 aDvNgDGrv 45
                +D Ng G++
  KOO24882.1 62 FDANGSGTI 70
                677777766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (92 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       305  (0.0170115); expected 358.6 (0.02)
Passed bias filter:                      288  (0.0160634); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.35u 0.24s 00:00:00.59 Elapsed: 00:00:00.38
# Mc/sec: 730.74
//
Query:       KOO24883.1  [L=460]
Description: swirm domain protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    4.4e-20   72.4   0.0    5.9e-20   72.0   0.0    1.2  1  Amino_oxidase  Flavin containing amine oxidoreductase
    5.4e-12   45.8   0.4    1.4e-11   44.4   0.4    1.8  1  NAD_binding_8  NAD(P)-binding Rossmann-like domain
    2.8e-07   30.0   1.7    6.3e-07   28.8   1.7    1.6  1  FAD_binding_2  FAD binding domain
    7.4e-07   29.4   0.0    1.4e-06   28.5   0.0    1.4  1  SWIRM          SWIRM domain
    1.6e-06   27.1   0.4    2.2e-06   26.6   0.4    1.2  1  HI0933_like    HI0933-like protein
      2e-06   27.5   0.3    2.6e-06   27.1   0.3    1.2  1  FAD_oxidored   FAD dependent oxidoreductase
    7.8e-06   25.3   0.3    1.2e-05   24.7   0.3    1.2  1  Pyr_redox_2    Pyridine nucleotide-disulphide oxidoreductase
    1.7e-05   24.2   0.2    2.3e-05   23.8   0.2    1.3  1  FAD_binding_3  FAD binding domain
    4.2e-05   22.9   3.0    6.5e-05   22.3   3.0    1.2  1  AlaDh_PNT_C    Alanine dehydrogenase/PNT, C-terminal domain
    8.7e-05   22.3   1.2    0.00018   21.2   1.2    1.5  1  DAO            FAD dependent oxidoreductase
     0.0001   22.0   1.8    0.00022   20.9   1.8    1.5  1  zf-C2H2_11     zinc-finger C2H2-type
    0.00053   19.3   0.1    0.00096   18.5   0.1    1.3  1  Thi4           Thi4 family
     0.0016   17.8   0.8     0.0026   17.1   0.8    1.3  1  Pyr_redox_3    Pyridine nucleotide-disulphide oxidoreductase
     0.0017   17.5   0.9     0.0024   17.0   0.9    1.2  1  GIDA           Glucose inhibited division protein A
      0.002   18.6   0.7     0.0038   17.7   0.7    1.5  1  Pyr_redox      Pyridine nucleotide-disulphide oxidoreductase
  ------ inclusion threshold ------
      0.017   15.9   1.7      0.029   15.2   0.3    2.3  1  zf-C2H2_4      C2H2-type zinc finger
      0.019   14.9   0.6      0.043   13.7   0.6    1.5  1  YjeF_N         YjeF-related protein N-terminus
       0.02   14.0   0.5      0.033   13.3   0.5    1.3  1  Lycopene_cycl  Lycopene cyclase protein
      0.039   14.5   0.0        0.1   13.1   0.0    1.8  1  XdhC_C         XdhC Rossmann domain
       0.06   12.7   0.2       0.12   11.7   0.2    1.4  1  2-Hacid_dh_C   D-isomer specific 2-hydroxyacid dehydrogenase,
       0.11   12.8   0.1        0.3   11.4   0.1    1.8  1  TrkA_N         TrkA-N domain
       0.16   11.5   0.1       0.32   10.4   0.1    1.5  1  Glu_dehyd_C    Glucose dehydrogenase C-terminus
        0.2   10.4   0.1       0.27   10.0   0.1    1.1  1  MCRA           MCRA family
       0.23   11.5   0.5       0.42   10.7   0.5    1.4  1  Shikimate_DH   Shikimate / quinate 5-dehydrogenase
        1.1    9.3   3.8        2.2    8.2   3.8    1.6  1  zf-C2HC_2      zinc-finger of a C2HC-type
        1.4    8.3   4.9        3.4    7.1   4.9    1.7  1  UCR_Fe-S_N     Ubiquitinol-cytochrome C reductase Fe-S subuni


Domain annotation for each model (and alignments):
>> Amino_oxidase  Flavin containing amine oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   72.0   0.0   8.6e-23   5.9e-20       2     147 ..     194     345 ..     193     380 .. 0.86

  Alignments for each domain:
  == domain 1  score: 72.0 bits;  conditional E-value: 8.6e-23
                    HHHHHHHHHHHTTEEEEEEESSSSSBTTS-EEEET...T.EEEESS--EEET.TTHHHHHHHHHTTCCCCEEEESCCGCEEEEETTEECCTTEECH CS
  Amino_oxidase   2 aGLaaArqLlsaGfdVtvlEardrvGGRirtvrsd...G.ylielGamwftg.agnpllellkelgledslslpdpgapkrvlskggrefpgdlsp 92 
                    aGLaaArqL+  G++V+vlEar+r+GGR++t + +   G   ++lGam++tg  gnp+  ++++     ++     ++++r+ + +g+ +p  l  
     KOO24883.1 194 AGLAAARQLHMLGHEVIVLEARQRTGGRVHTLNVKtpmGmGSVDLGAMVVTGtEGNPVAMIARQTRSRMHRL----TPKCRIYTPTGQPVPDALDT 285
                    9**********************************999779***********************88885555....66788*********888888 PP

                    H.HHHHHHHHHHHHHH.....CHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCHHHHH CS
  Amino_oxidase  93 v.paewealleqgals.....aellsleeklrlgleallqktldeldldskslaesleelg 147
                      +aew+++l+ ++        + +sl+++lr+ l + + +++   + +  ++++++++++
     KOO24883.1 286 AlEAEWNTMLDMCKAEalpepFADVSLGSRLRAILRERK-EWYSTIEGQLAQDEAARRAHH 345
                    88*********666668889999*********9999998.555555555555555555544 PP

>> NAD_binding_8  NAD(P)-binding Rossmann-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.4   0.4     2e-14   1.4e-11       1      62 [.     188     252 ..     188     258 .. 0.87

  Alignments for each domain:
  == domain 1  score: 44.4 bits;  conditional E-value: 2e-14
                    EE--SHHHHHHHHHHHCCTEEEEEE-SSSSSSGGG-EECETT....CEECTS---EEETTHHHHCH CS
  NAD_binding_8   1 IvGaGlsGlvaAylLakagfdvlllekrdrlGGraasyevpg....vrvdygahifhgsgyypnvr 62 
                    ++GaG++Gl+aA+ L+  g++v +le+r+r+GGr+++ +v+       vd+ga +++g++  + v 
     KOO24883.1 188 VIGAGAAGLAAARQLHMLGHEVIVLEARQRTGGRVHTLNVKTpmgmGSVDLGAMVVTGTE-GNPVA 252
                    8**************************************94444589*********9975.55554 PP

>> FAD_binding_2  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.8   1.7   9.2e-10   6.3e-07       2      38 ..     186     222 ..     185     226 .. 0.93

  Alignments for each domain:
  == domain 1  score: 28.8 bits;  conditional E-value: 9.2e-10
                    EEEE--SHHHHHHHHHHHHTTT-EEEEESSSGGGSGG CS
  FAD_binding_2   2 viViGsGlAGLaAAleaaeaGlkvavvekeqefggat 38 
                    viViG+G+AGLaAA +++  G++v+v+e  q++gg  
     KOO24883.1 186 VIVIGAGAAGLAAARQLHMLGHEVIVLEARQRTGGRV 222
                    9********************************9954 PP

>> SWIRM  SWIRM domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.5   0.0     2e-09   1.4e-06       8      89 .]      67     151 ..      62     151 .. 0.81

  Alignments for each domain:
  == domain 1  score: 28.5 bits;  conditional E-value: 2e-09
       SWIRM   8 pdslhpiEkellselfngkdktpeeYlkiRnkiialyrenpkeyltvteaqkalk...rrrl.tgidvnllsrihefLerwGlINf 89 
                 p++l + E+ +++       ++p +   iRn+++ +  +np++ lt+ e +k l    +r + t+ d++ +s ++e L+++G++Nf
  KOO24883.1  67 PYELADFERTCCAIPD-ALRRKPSRMTSIRNHMLGRAAKNPSKFLTFAESVKGLDssfQRSVaTSADAADASAVYECLTHHGYLNF 151
                 5666667766653222.2258999999***********************9888777744556999*******************8 PP

>> HI0933_like  HI0933-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.6   0.4   3.2e-09   2.2e-06       2      39 ..     185     222 ..     184     225 .. 0.93

  Alignments for each domain:
  == domain 1  score: 26.6 bits;  conditional E-value: 3.2e-09
                  SEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSS-HHH CS
  HI0933_like   2 dviviGgGaAGlmaAisaakrgkrVlllekakklgrKi 39 
                  +viviG+GaAGl aA +++  g++V++le+ +++g ++
   KOO24883.1 185 RVIVIGAGAAGLAAARQLHMLGHEVIVLEARQRTGGRV 222
                  79*****************************9998765 PP

>> FAD_oxidored  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.1   0.3   3.8e-09   2.6e-06       2      73 ..     186     260 ..     185     344 .. 0.68

  Alignments for each domain:
  == domain 1  score: 27.1 bits;  conditional E-value: 3.8e-09
  FAD_oxidored   2 vvVvGGgpaGvaAAiaAaraGakvlLveergvlGGlltsglvatdignkaee...qvvtgiareflerlrqrgga 73 
                   v+V+G+g+aG+aAA +    G +v+++e r++ GG +    v t++g+ + +    vvtg+ +  ++ +++++ +
    KOO24883.1 186 VIVIGAGAAGLAAARQLHMLGHEVIVLEARQRTGGRVHTLNVKTPMGMGSVDlgaMVVTGTEGNPVAMIARQTRS 260
                   9**************************************999***997766677755555544444444333222 PP

>> Pyr_redox_2  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.7   0.3   1.7e-08   1.2e-05     140     179 ..     181     221 ..     155     249 .. 0.67

  Alignments for each domain:
  == domain 1  score: 24.7 bits;  conditional E-value: 1.7e-08
                  S-TSEEEEES-SHHHHHHHHHHHHHT-EEEEEESSSSSS.T CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.x RF
  Pyr_redox_2 140 llpkrivvvGgGyiGvElAaalaklgkevtlveardrll.r 179
                    ++r++v+G+G+ G+  A +l+ lg+ev ++ear+r   r
   KOO24883.1 181 PARRRVIVIGAGAAGLAAARQLHMLGHEVIVLEARQRTGgR 221
                  44466666666666666666666666666666666665544 PP

>> FAD_binding_3  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.8   0.2   3.3e-08   2.3e-05       3      58 ..     185     238 ..     183     338 .. 0.77

  Alignments for each domain:
  == domain 1  score: 23.8 bits;  conditional E-value: 3.3e-08
                    EEEEE--SHHHHHHHHHHHHTTHHEEEEESSSSSCCSSS--EEEHHHHHHHHHTT- CS
  FAD_binding_3   3 dVlIVGaGpaGlmlallLseaGvrvvlvekrsttvvlpradglnqrtmellrqlGl 58 
                     V+++GaG aGl +a+ L++ G +v+++e r++t   +r ++ln +t   + ++ l
     KOO24883.1 185 RVIVIGAGAAGLAAARQLHMLGHEVIVLEARQRT--GGRVHTLNVKTPMGMGSVDL 238
                    69***************************99887..57888888888555555544 PP

>> AlaDh_PNT_C  Alanine dehydrogenase/PNT, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.3   3.0   9.4e-08   6.5e-05      19      71 ..     175     226 ..     162     262 .. 0.84

  Alignments for each domain:
  == domain 1  score: 22.3 bits;  conditional E-value: 9.4e-08
                  TTCEETCB---EEEEESTSHHHHHHHHHHHHTT-EEEEEESSHHHHHHHHHTT CS
  AlaDh_PNT_C  19 laGgvpgvepakvlviGgGvaGlqAiatakglgakVtvlDvrparleqleslg 71 
                  +a++ +  ++ +v+viG+G aGl+A++  + lg +V vl+ r+++  ++++l+
   KOO24883.1 175 AAATAN-PARRRVIVIGAGAAGLAAARQLHMLGHEVIVLEARQRTGGRVHTLN 226
                  444444.35668******************************99988877765 PP

>> DAO  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.2   1.2   2.6e-07   0.00018       1      33 [.     185     219 ..     185     226 .. 0.88

  Alignments for each domain:
  == domain 1  score: 21.2 bits;  conditional E-value: 2.6e-07
                 EEEEECTSHHHHHHHHHHHHTT..EEEEESSSSTT CS
         DAO   1 dvviiGGGiiGlstAyeLarrg..Vtllekgdiag 33 
                 +v++iG+G +Gl++A++L   g  V++le++ + g
  KOO24883.1 185 RVIVIGAGAAGLAAARQLHMLGheVIVLEARQRTG 219
                 59****************766889******97766 PP

>> zf-C2H2_11  zinc-finger C2H2-type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.9   1.8   3.2e-07   0.00022       3      24 ..     370     391 ..     369     393 .. 0.93

  Alignments for each domain:
  == domain 1  score: 20.9 bits;  conditional E-value: 3.2e-07
  zf-C2H2_11   3 stcqCleCGlcftSqlsLsRHl 24 
                 s++ C +CG+cf+S   L RH+
  KOO24883.1 370 SAYACELCGRCFASIDRLDRHR 391
                 7889*****************8 PP

>> Thi4  Thi4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.5   0.1   1.4e-06   0.00096      16      55 ..     182     220 ..     171     225 .. 0.88

  Alignments for each domain:
  == domain 1  score: 18.5 bits;  conditional E-value: 1.4e-06
                 TEEEEEEE--SHHHHHHHHHHHHCTTS-EEEEESSSS--T CS
        Thi4  16 aesDvvivGaGssGLtaayylakkpdlkvailersvspGG 55 
                 a   v+++GaG++GL+aa+ l    + +v++le++   GG
  KOO24883.1 182 ARRRVIVIGAGAAGLAAARQLHML-GHEVIVLEARQRTGG 220
                 56779****************999.9*********99998 PP

>> Pyr_redox_3  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   0.8   3.8e-06    0.0026       1      30 [.     187     215 ..     187     222 .. 0.92

  Alignments for each domain:
  == domain 1  score: 17.1 bits;  conditional E-value: 3.8e-06
  Pyr_redox_3   1 iIiGaGPaGlaaaielkkagledylilEkg 30 
                  i+iGaG+aGlaaa +l  +g  ++++lE  
   KOO24883.1 187 IVIGAGAAGLAAARQLHMLGH-EVIVLEAR 215
                  89******************9.79****86 PP

>> GIDA  Glucose inhibited division protein A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.0   0.9   3.5e-06    0.0024       2      29 ..     186     215 ..     185     237 .. 0.82

  Alignments for each domain:
  == domain 1  score: 17.0 bits;  conditional E-value: 3.5e-06
                 EEEE-SSHHHHHHHHHHHHTT--EEEE..E CS
        GIDA   2 viViGgGhAGceAAlaaarlGakvlLi..t 29 
                 viViG+G AG++AA ++  lG++v+ +   
  KOO24883.1 186 VIVIGAGAAGLAAARQLHMLGHEVIVLeaR 215
                 9***********************998441 PP

>> Pyr_redox  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.7   0.7   5.5e-06    0.0038       1      35 [.     185     219 ..     185     252 .. 0.87

  Alignments for each domain:
  == domain 1  score: 17.7 bits;  conditional E-value: 5.5e-06
                 EEEEECSSHHHHHHHHHHHHTTSEEEEEESSSSSS CS
   Pyr_redox   1 kvvvvGgGyiglElAgalaelgkkVtvversdkll 35 
                 +v+v+G+G  gl +A  l+ lg++V v+e++ +  
  KOO24883.1 185 RVIVIGAGAAGLAAARQLHMLGHEVIVLEARQRTG 219
                 79***************************998866 PP

>> zf-C2H2_4  C2H2-type zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.2   0.3   4.2e-05     0.029       1      20 [.     372     391 ..     372     392 .. 0.94

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 4.2e-05
   zf-C2H2_4   1 fkCpiCgksFsskkaLlrHl 20 
                 + C++Cg+ F s ++L rH 
  KOO24883.1 372 YACELCGRCFASIDRLDRHR 391
                 89*****************6 PP

>> YjeF_N  YjeF-related protein N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.6   6.3e-05     0.043      13      64 ..     168     217 ..     158     234 .. 0.70

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 6.3e-05
      YjeF_N  13 aevlrallg.nspaekkvlvlvGsgnnGgdglaaArhLaqegakVtvllleee 64 
                 +   +a++  +++++++ ++++G    G+ glaaAr+L+  g++V+vl  +++
  KOO24883.1 168 VSSSKAAAAaTANPARRRVIVIGA---GAAGLAAARQLHMLGHEVIVLEARQR 217
                 443333333357888888888997...6789****************655544 PP

>> Lycopene_cycl  Lycopene cyclase protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.5   4.8e-05     0.033       2      34 ..     186     216 ..     185     227 .. 0.91

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 4.8e-05
  Lycopene_cycl   2 vvviGaGpAglslAarlteakpglkvvlieasp 34 
                    v+viGaG+Agl+ A +l     g +v+++ea +
     KOO24883.1 186 VIVIGAGAAGLAAARQL--HMLGHEVIVLEARQ 216
                    89***************..99*******99865 PP

>> XdhC_C  XdhC Rossmann domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.0   0.00015       0.1       1      34 [.     186     219 ..     186     280 .. 0.82

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 0.00015
                 EEEE--STTHHHHHHHHHHHTEEEEEEES-GGGG CS
      XdhC_C   1 lvifGaghvaqalarlaaalgfrvtvvdpreefa 34 
                 ++++Gag  + a ar +++lg +v+v+++r+++ 
  KOO24883.1 186 VIVIGAGAAGLAAARQLHMLGHEVIVLEARQRTG 219
                 689***************************9643 PP

>> 2-Hacid_dh_C  D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.2   0.00018      0.12      32      72 ..     179     219 ..     163     235 .. 0.82

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.00018
                   S-GTTSEEEEES-SHHHHHHHHHHHHTT-EEEEESSSHHHH CS
  2-Hacid_dh_C  32 kelsgktvGiiGlGrIGqavakrlkafgmkviaydrskkke 72 
                    + ++++v +iG+G+ G a+a+ l+ +g +vi+ + ++++ 
    KOO24883.1 179 ANPARRRVIVIGAGAAGLAAARQLHMLGHEVIVLEARQRTG 219
                   5667899**************************99887754 PP

>> TrkA_N  TrkA-N domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.1   0.00044       0.3       1      32 [.     186     217 ..     186     230 .. 0.88

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00044
                 EEEES-SHHHHHHHHHHHH.TTEEEEEEESSHH CS
      TrkA_N   1 iiiiGlGrvGrslaeeLse.ggkdvvvidkdee 32 
                 +i+iG+G  G + a++L+  g+ +v+v + +++
  KOO24883.1 186 VIVIGAGAAGLAAARQLHMlGH-EVIVLEARQR 217
                 79*****************888.5***998875 PP

>> Glu_dehyd_C  Glucose dehydrogenase C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.1   0.00047      0.32      23      72 ..     175     221 ..     166     244 .. 0.81

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00047
  Glu_dehyd_C  23 srsafewepesalvlGaGslGLLalalleaeerglervyvlgrrdrpdpt 72 
                  + ++++  +++++v+GaG+ GL a+ +l++   g e v vl++r+r++ +
   KOO24883.1 175 AAATANPARRRVIVIGAGAAGLAAARQLHM--LGHE-VIVLEARQRTGGR 221
                  44455566789*************999986..6776.9999999998755 PP

>> MCRA  MCRA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   0.1   0.00039      0.27       3      47 ..     185     225 ..     183     240 .. 0.89

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.00039
                 EEEEE--SHHHHHHHHHHHHTT---GGGEEEE-SS---------- CS
        MCRA   3 kaylvGsGiasLaaAvyLirdakvpgenihileelkvaggsldga 47 
                 ++ ++G+G a+LaaA    r+ ++ g+++ +le+ + +gg +++ 
  KOO24883.1 185 RVIVIGAGAAGLAAA----RQLHMLGHEVIVLEARQRTGGRVHTL 225
                 6789***********....677******************99876 PP

>> Shikimate_DH  Shikimate / quinate 5-dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.5   0.00061      0.42       8      45 ..     179     216 ..     172     234 .. 0.76

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00061
                   S..TT-EEEEES-SHHHHHHHHHHHCCT-CEEEEEESS CS
  Shikimate_DH   8 eslkekkvlliGaGemaelvakhLlakgvkkvvvaNRt 45 
                    + ++++v++iGaG  +  +a++L+  g + +v   R+
    KOO24883.1 179 ANPARRRVIVIGAGAAGLAAARQLHMLGHEVIVLEARQ 216
                   466789*******************9999966655443 PP

>> zf-C2HC_2  zinc-finger of a C2HC-type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.2   3.8    0.0033       2.2       5      24 ..     374     394 ..     372     395 .. 0.93

  Alignments for each domain:
  == domain 1  score: 8.2 bits;  conditional E-value: 0.0033
   zf-C2HC_2   5 CpkCgRsF.npdrlekHepvC 24 
                 C+ CgR F   drl +H  +C
  KOO24883.1 374 CELCGRCFaSIDRLDRHRLCC 394
                 ********999******9999 PP

>> UCR_Fe-S_N  Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.1   4.9    0.0049       3.4       4      26 ..     176     198 ..     173     200 .. 0.85

  Alignments for each domain:
  == domain 1  score: 7.1 bits;  conditional E-value: 0.0049
  UCR_Fe-S_N   4 aesdeptRRDFLyiATgavgaVG 26 
                 a   +p RR++++i++ga+g  +
  KOO24883.1 176 AATANPARRRVIVIGAGAAGLAA 198
                 67889**************9765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (460 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       540  (0.0301188); expected 358.6 (0.02)
Passed bias filter:                      417  (0.0232584); expected 358.6 (0.02)
Passed Vit filter:                        66  (0.00368119); expected 17.9 (0.001)
Passed Fwd filter:                        26  (0.00145016); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              26  [number of targets reported over threshold]
# CPU time: 0.55u 0.26s 00:00:00.81 Elapsed: 00:00:00.42
# Mc/sec: 3309.19
//
Query:       KOO24884.1  [L=307]
Description: lysine-specific histone demethylase-like protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.7e-49  169.4   0.2    2.1e-49  169.0   0.2    1.1  1  Amino_oxidase  Flavin containing amine oxidoreductase


Domain annotation for each model (and alignments):
>> Amino_oxidase  Flavin containing amine oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  169.0   0.2   1.2e-53   2.1e-49     252     450 ..       2     203 ..       1     205 [. 0.93

  Alignments for each domain:
  == domain 1  score: 169.0 bits;  conditional E-value: 1.2e-53
                    EESEEEE-S-HHHHH..SSEEESCCSHHHHHHHHHSEEEEEEEEEEEESSGGSGCSTS.ECE..CECCCEEETTTEEEEECCECCCSTTTEEEEEE CS
  Amino_oxidase 252 eaDaVvvTvplgvlk..ailfsPplpdekaeairnlgfgsvnkvilefdrkfwednal.gqg..vlvseltttlgeafissdfpsrappgkglvll 342
                    +aDaVvvT+plgvlk   + f+Pplp+ k++ai++lgfg +nkv l f+ +fwed++         ++ +++ +ge f +  ++ ++ +g++++l+
     KOO24884.1   2 DADAVVVTLPLGVLKagMVRFDPPLPPRKQSAIDRLGFGALNKVLLLFPHAFWEDLEGrR-DfwGVCAPTSKRRGEGFQF--WNLQRCTGQPMLLV 94 
                    69*****************************************************88542.3558999************..***********555 PP

                    EEECHHHHHHHTTS-HHHHHHHHHHHHHHHHT.GTSSTCSEEEEEECCTETTTSSSEEE.BTTHHHHHHHHHHCHHCSTTEEE.SGGGCTTTTTSH CS
  Amino_oxidase 343 vyvggdaaneleslsdeelvqavlrdLrklfg.eevpepkatlvtrWhtdplargsysyvsvgpghedydplakpegdprlffAGehtsreypgtv 437
                     + g  a ++ + + de+ v+a+l++Lr +fg ++vp p + +vtrW +dp+arg+ys+v+ g+ ++dyd +a+p  d++l +AGe+ +r +p+tv
     KOO24884.1  95 LHAGRAACRDGAPTRDEDAVEATLEYLRGIFGaDAVPAPTQQVVTRWDEDPYARGVYSHVALGATSRDYDLMAEPLWDDTLLWAGEAACRAHPATV 190
                    55556666666777********************************************************************************** PP

                    HHHHHHHHHHHHH CS
  Amino_oxidase 438 egAilSGlraAar 450
                     gA+ SGlr+Aar
     KOO24884.1 191 AGAFISGLREAAR 203
                    ***********97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (307 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1464  (0.0816554); expected 358.6 (0.02)
Passed bias filter:                      756  (0.0421663); expected 358.6 (0.02)
Passed Vit filter:                       100  (0.00557756); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.53u 0.26s 00:00:00.79 Elapsed: 00:00:00.41
# Mc/sec: 2238.14
//
Query:       KOO24885.1  [L=140]
Description: hypothetical protein Ctob_008535 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.3e-17   63.6   9.2    2.7e-17   63.4   9.2    1.0  1  TMEM107   Transmembrane protein


Domain annotation for each model (and alignments):
>> TMEM107  Transmembrane protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.4   9.2   1.5e-21   2.7e-17       1     122 [.       7     128 ..       7     129 .. 0.98

  Alignments for each domain:
  == domain 1  score: 63.4 bits;  conditional E-value: 1.5e-21
     TMEM107   1 LvPfRflalvahliilvvilyskeeniraalpldfssseyseertelvvalivsllllvieliglisGislfsatlsllsivlHaigavllslfilesw 99 
                 +vP+Rflalv h++ ++ +ly  ++n  +alp  + +s+ ++   +  +al++++ +l+i+ ++++ G+s+f    s+++i++H+  ++lls++++ + 
  KOO24885.1   7 VVPIRFLALVGHFFSALLTLYAIKDNCIVALPFLYEQSDLDSLVGSASAALVLCFCVLAINAVSFFGGFSTFDLPISIFHIFMHTLESILLSIVVIAKG 105
                 69************************************************************************************************* PP

     TMEM107 100 sldsiwyvfaffsvlPallElla 122
                 ++ ++w+++++++ l +l E+++
  KOO24885.1 106 HYLYVWFIVGIGNGLQLLAEVYT 128
                 ******************99986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (140 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       571  (0.0318478); expected 358.6 (0.02)
Passed bias filter:                      243  (0.0135535); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.22s 00:00:00.59 Elapsed: 00:00:00.36
# Mc/sec: 1151.10
//
Query:       KOO24886.1  [L=1506]
Description: anoctamin-like protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.4e-95  320.8   4.8    1.8e-95  320.5   4.8    1.1  1  Anoctamin       Calcium-activated chloride channel
    4.6e-07   30.4   0.0    1.1e-06   29.1   0.0    1.6  1  Gly_transf_sug  Glycosyltransferase sugar-binding region cont
    0.00019   21.3   0.0     0.0032   17.2   0.0    2.1  2  Anoct_dimer     Dimerisation domain of Ca+-activated chloride


Domain annotation for each model (and alignments):
>> Anoctamin  Calcium-activated chloride channel
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  320.5   4.8     3e-99   1.8e-95       1     447 [.     232     747 ..     232     749 .. 0.81

  Alignments for each domain:
  == domain 1  score: 320.5 bits;  conditional E-value: 3e-99
   Anoctamin   1 IrdyFGekiAlYFawlgfytsallppavlGlllfl.yglatitlfdneltvvfalfmviWatlflelWkrreaelaykWgtsdfeeeeeprpefrgelk 98 
                 +rdyFGe+iA+Y+a+ +  t+a l+pa++G +lf+ ++     + dn +t+++++f+ +W t fl+ W+r ea+la +W++ d++e e++r+ef+g+  
  KOO24886.1 232 VRDYFGERIAFYYAFTEELTNAVLYPAAMGAVLFIvSQIWYNGSTDNMFTPMYSMFILVWITYFLKRWRRAEARLAAHWHVVDYRETERQRKEFEGDEA 330
                 79*********************************6444444788999*************************************************99 PP

   Anoctamin  99 r....................espvtgeeefyyppwk..rrlfrllvslplvllliclavvgvlilrclal.qelvssvke............llsflp 162
                 r                    + p t   + + p+ +  r l  +++ +p++ + +++++ +vl+++ la+ + ++  +++            l s+l+
  KOO24886.1 331 RgfysdegywvpvpdddeyadKAPLT---KRFLPSERreRVLYSYVLLTPIL-VGMVVVITMVLAYKSLAMlNFYLLFINDgkpetldrhgvqLGSVLG 425
                 9*********9999988765432332...33334333223344444444444.3334467778888888885555555555788988888666666*** PP

   Anoctamin 163 tvlnlvlililnevykklaiwltdlEnhrtqseyekslilKvflfqfvnsylslfyiaFvkg..............kflkypgkylr............ 235
                  ++n v + ++n+vy+++a++ltd+Enhrt s+y+++li+K+++fq  nsy+ l+y+aFvk                                      
  KOO24886.1 426 GAMNGVYVAVSNQVYQRVARRLTDWENHRTLSDYDDALIVKTMIFQSANSYVALYYTAFVKAgdidwlswlthvpeY---------Chdkthftltaeq 515
                 ************************************************************98777777655533331.........0345567777877 PP

   Anoctamin 236 ..rseecdeegcleelkeqLaiilvtkqllnnilevllPylkeklkkkkk................esekdekeeeeskkltqaekeyelkkyedlfdd 316
                    +    +  c+++l+  + + l+++ l   ile+      e++ +  +                + ++ + e+   + +t +e +++l+++e +f +
  KOO24886.1 516 ieAQYGGVNPYCMNDLSAFMTTALIVNMLTGKILEFTAKE--ETAIE--RicfklrflcgghsvavKMAEASGEQVVISAMTVYEAQAKLEPFEGVFSE 610
                 77777788889************************99772..22111..12233334445555555444455555566789999999************ PP

   Anoctamin 317 YlemviqfGyvtlFsaafPlapllallnniieirldafklvtelrRpvperaesiGiWqkilealgvlavitnallialtsd.p.........ekdteq 405
                 Y  +v+q Gyv+lF++afPla +l +   ++e+r+da+k+v+ +rRp     e+iG Wq++l++l+ l+v+tn+ l+ +t +               e 
  KOO24886.1 611 YSRIVVQLGYVVLFAPAFPLASALLFASFYFELRTDAYKMVCNTRRPPYIGGEDIGSWQTVLRVLAALGVLTNVGLVGVTDTtLkrllpfkllG-LIE- 707
                 *****************************************************************************88876414555553321.222. PP

   Anoctamin 406 ylsvlaarlafvvvlehvvlllkyliavlipdipkwvkeeik 447
                     ++++l+f++v+eh++ll ++ + ++ipd+p++++ e +
  KOO24886.1 708 --INESNKLMFLIVVEHLLLLAQFYVVTMIPDMPEDLAVETA 747
                 ..457899999999**********************998876 PP

>> Gly_transf_sug  Glycosyltransferase sugar-binding region containing DXD motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.1   0.0   1.9e-10   1.1e-06      56      91 ..    1248    1282 ..    1202    1288 .. 0.77

  Alignments for each domain:
  == domain 1  score: 29.1 bits;  conditional E-value: 1.9e-10
  Gly_transf_sug   56 lfialsDllRlaiLykyGGiYlDtDvivlkslrnsi 91  
                       +i+++Dl+R++++ ++GG+YlD+Dv +l++l + +
      KOO24886.1 1248 APIQRIDLFRYLAIEHFGGFYLDVDVLLLQPL-DAL 1282
                      5789***************************9.765 PP

>> Anoct_dimer  Dimerisation domain of Ca+-activated chloride-channel, anoctamin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.9   0.0    0.0032        19      33      87 ..      81     133 ..      28     141 .. 0.74
   2 !   17.2   0.0   5.4e-07    0.0032     105     195 ..     119     206 ..     114     229 .. 0.81

  Alignments for each domain:
  == domain 1  score: 4.9 bits;  conditional E-value: 0.0032
  Anoct_dimer  33 ReeFeknLeeeGLelekeeeeekkkklvFvkihaPwevlcryAEilklkmplkkk 87 
                  R+   ++ ++ G+e     + +++++ v +k++aP  +l + AE l +   lk++
   KOO24886.1  81 RDVVAARVRSIGIEAVA--DLSRDRDEVLLKLSAPDALLEKMAEHLTMEKRLKAD 133
                  55555555555555444..4446889999*******************9999953 PP

  == domain 2  score: 17.2 bits;  conditional E-value: 5.4e-07
  Anoct_dimer 105 kllkkllqlneeeiekpkekkyltapfsreklelFlikdkdtfFtsaqRsrivyeILkrtkykekkkkkvGierLlaegvYtaayPLHdge 195
                  k+  + l+++++   +++ ++ + + f+  ++e+F+ ++  +fF+s +R+r+++ +L+  +   +    + ++ Lla +v ta  P H+ e
   KOO24886.1 119 KM-AEHLTMEKRLKADRRGREGYYTDFKAAEKERFEPESPTCFFSSLERIRLLQSLLELPQH--EGGCGLNLDDLLAIKVLTAVVPVHEIE 206
                  55.44455555555555777778899********************************9998..6678999*****************965 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1506 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       529  (0.0295053); expected 358.6 (0.02)
Passed bias filter:                      409  (0.0228122); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.84u 0.26s 00:00:01.10 Elapsed: 00:00:00.41
# Mc/sec: 11022.44
//
Query:       KOO24887.1  [L=334]
Description: flagellar associated protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.7e-41  141.2  26.4    2.7e-41  141.2  26.4    2.6  3  DUF4201        Domain of unknown function (DUF4201)
  ------ inclusion threshold ------
      0.012   15.6   0.8      0.012   15.6   0.8    3.6  5  DUF1664        Protein of unknown function (DUF1664)
       0.26   10.3   5.2       0.23   10.4   3.7    1.5  1  Emaravirus_P4  P4 movement protein of Emaravirus, and the 30K
        4.6    7.4  18.8        1.5    9.0  10.7    3.0  3  COG5           Golgi transport complex subunit 5


Domain annotation for each model (and alignments):
>> DUF4201  Domain of unknown function (DUF4201)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.0      0.83   3.7e+03     126     149 ..      25      47 ..       9      61 .. 0.56
   2 ?    2.6   1.2     0.022        99      71     118 ..      68     119 ..      60     122 .. 0.62
   3 !  141.2  26.4   6.1e-45   2.7e-41       3     174 ..     149     320 ..     147     323 .. 0.96

  Alignments for each domain:
  == domain 1  score: -2.5 bits;  conditional E-value: 0.83
     DUF4201 126 kqneklkqqggllrvPaLlkDYdk 149
                 ++ne ++++++   +PaLl D d+
  KOO24887.1  25 RENELFESHLQR-TAPALLADDDE 47 
                 444444444443.67777777433 PP

  == domain 2  score: 2.6 bits;  conditional E-value: 0.022
     DUF4201  71 kttktvhalthlkeklhmlesels....elkkelkekeerlaklrkelykvk 118
                 k+   v+++ +l+e     +++++    +l+ +++e++ r+a+++k  y+ k
  KOO24887.1  68 KYDIAVQEMDELREEIALTKRNSEqlldTLRARMEECDVRIAEIKKDAYEFK 119
                 5555677788888877755555440000456666677777777777777766 PP

  == domain 3  score: 141.2 bits;  conditional E-value: 6.1e-45
     DUF4201   3 kkrnelsklrlklislkhqlakiqeklekkeelgegLtlidFeqlqienqalnkkIeernkeLkrlkkkttktvhalthlkeklhmleselselkkelk 101
                 +k +  +klrlk+++lk+q++k++ +l++ke++ge L++idF+ql+ienq++ +kIeern+eL+rlk++t++tv++l++lk kl+ l++e++ lk e+ 
  KOO24887.1 149 AKAAIAEKLRLKNATLKSQYQKVEGQLQQKEDMGEVLHVIDFDQLKIENQQYLEKIEERNNELLRLKLTTGNTVQVLNTLKHKLNNLTTESELLKRETT 247
                 6667789******************************************************************************************** PP

     DUF4201 102 ekeerlaklrkelykvklerdklrkqneklkq.qggllrvPaLlkDYdktkekveekrksvkkLrrkvkilemr 174
                  ++e lak+ +e+++v++e++++ +  +kl++ ++++ ++P++l+ Y+++k++   ++++++ ++rkv i+em 
  KOO24887.1 248 ARKESLAKISEEITRVEQEKEQAARLDRKLRReENTESNMPQVLE-YVQQKAEAFVLESQLNAWKRKVGIAEME 320
                 ******************************8626899*******9.9999999999****************96 PP

>> DUF1664  Protein of unknown function (DUF1664)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.6   0.8   2.7e-06     0.012      48     118 ..      74     148 ..      66     149 .. 0.83
   2 ?    3.3   0.6     0.018        79      65     109 ..     137     181 ..     123     199 .. 0.76
   3 ?    0.4   4.1      0.14   6.5e+02      55     120 ..     191     256 ..     156     259 .. 0.70
   4 ?    4.5   3.4    0.0077        34      66     118 ..     223     278 ..     201     284 .. 0.73
   5 ?    2.5   1.2     0.032   1.4e+02      49      99 ..     252     301 ..     244     322 .. 0.73

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 2.7e-06
     DUF1664  48 kqleqvseslaatkrhLssridrvdkkldeqkeiskeikeevtevredl....seigedvesvkeavegleskle 118
                 ++++++ e++a tkr+ ++ +d++ ++++e+   ++eik++  e ++d+    +++++  +  ++av+ +e+kl+
  KOO24887.1  74 QEMDELREEIALTKRNSEQLLDTLRARMEECDVRIAEIKKDAYEFKRDIvtgaENFRTGKTIAEKAVRYMEEKLN 148
                 789*****************************************9999822224555555556778888888876 PP

  == domain 2  score: 3.3 bits;  conditional E-value: 0.018
     DUF1664  65 ssridrvdkkldeqkeiskeikeevtevredlseigedvesvkea 109
                 ++ +  +++kl++ ++i+++++ + ++++++ ++++ ++++ +++
  KOO24887.1 137 EKAVRYMEEKLNAKAAIAEKLRLKNATLKSQYQKVEGQLQQKEDM 181
                 567788899999999999999999999999999999888876555 PP

  == domain 3  score: 0.4 bits;  conditional E-value: 0.14
     DUF1664  55 eslaatkrhLssridrvdkkldeqkeiskeikeevtevredlseigedvesvkeavegleskleri 120
                 ++l+   ++  ++i++ +++l   k ++ ++ + +++++++l+++ +++e +k+  +  +++l++i
  KOO24887.1 191 DQLKIENQQYLEKIEERNNELLRLKLTTGNTVQVLNTLKHKLNNLTTESELLKRETTARKESLAKI 256
                 455555666667777777777777777777777777888888888888877777666666666555 PP

  == domain 4  score: 4.5 bits;  conditional E-value: 0.0077
     DUF1664  66 sridrvdkkldeqkeiskeikeevtevredlseigedvesvke...avegleskle 118
                 + ++++ +kl++ +  s+ +k+e t+ +e l++i+e+++ v++       l+ kl+
  KOO24887.1 223 QVLNTLKHKLNNLTTESELLKRETTARKESLAKISEEITRVEQekeQAARLDRKLR 278
                 55778888888888888888888888888888888888888651113445666665 PP

  == domain 5  score: 2.5 bits;  conditional E-value: 0.032
     DUF1664  49 qleqvseslaatkrhLssridrvdkkldeqkeiskeikeevtevredlsei 99 
                 +l ++se+++++ ++ +++ +r+d+kl   +++ +++ + ++ v+++ +++
  KOO24887.1 252 SLAKISEEITRVEQE-KEQAARLDRKLRREENTESNMPQVLEYVQQKAEAF 301
                 567777777777666.55667888888888888888888888787777765 PP

>> Emaravirus_P4  P4 movement protein of Emaravirus, and the 30K superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   3.7   5.2e-05      0.23     227     301 ..     199     266 ..     188     292 .. 0.77

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 5.2e-05
  Emaravirus_P4 227 syldkkynerkeallqleeisnaliwgsdqglnkvkaklkedtssstlllidsekrveaiklkliqdeiseakak 301
                    +yl+ k +er++ ll+l+  +      + q ln +k kl++ t+ s+ll ++++ r+e+  l +i +ei+    +
     KOO24887.1 199 QYLE-KIEERNNELLRLKLTTG----NTVQVLNTLKHKLNNLTTESELLKRETTARKES--LAKISEEITRVEQE 266
                    3554.56677777777754433....3679****************************7..56788888766655 PP

>> COG5  Golgi transport complex subunit 5
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.8   0.3     0.029   1.3e+02      28      85 ..      59     105 ..      37     144 .. 0.61
   2 ?    9.0  10.7   0.00033       1.5      21     121 ..     171     272 ..     157     279 .. 0.84
   3 ?   -1.1   0.0      0.44     2e+03      45      77 ..     273     307 ..     267     326 .. 0.69

  Alignments for each domain:
  == domain 1  score: 2.8 bits;  conditional E-value: 0.029
                 XXXXXXXXXXXXXXXXXXXXXXXX..XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
        COG5  28 eldlstplkrlnydiqeldkrlrq..litsnhleLlehlskskslssvlselksslesLs 85 
                 ++ l tp ++   ++qe+d+  ++  l+++n ++Ll+ l+ +              e+  
  KOO24887.1  59 QMTLLTPEQKYDIAVQEMDELREEiaLTKRNSEQLLDTLRARM-------------EECD 105
                 4555555556566666555322221134555566666555444.............4433 PP

  == domain 2  score: 9.0 bits;  conditional E-value: 0.00033
                 XXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-TTHHHHHHHHHHHHHHHHHHHHHHH CS
        COG5  21 tnnnddteldlstplkrlnydiqeld.krlrqlitsnhleLlehlskskslssvlselksslesLsasyerlkskvlepyeeaeklqsalkrlhqtldL 118
                 ++++ ++++d+   l  + +d  +++ +++ ++i ++ +eLl    +  ++ +vl++lk +l++L+   e lk++ + + e++ k ++++ r+ q ++ 
  KOO24887.1 171 VEGQLQQKEDMGEVLHVIDFDQLKIEnQQYLEKIEERNNELLRLKLTTGNTVQVLNTLKHKLNNLTTESELLKRETTARKESLAKISEEITRVEQEKEQ 269
                 556666777777778888888777752678999************************************************************998776 PP

                 HHH CS
        COG5 119 lrr 121
                 + r
  KOO24887.1 270 AAR 272
                 655 PP

  == domain 3  score: -1.1 bits;  conditional E-value: 0.44
                 XXXXXX..XXXXXXXXXXXXXXXXXXXXXXXXXXX CS
        COG5  45 ldkrlr..qlitsnhleLlehlskskslssvlsel 77 
                 ld++lr  +++ sn +++le +++++++  + s+l
  KOO24887.1 273 LDRKLRreENTESNMPQVLEYVQQKAEAFVLESQL 307
                 56666511457788888888888888876555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (334 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2755  (0.153662); expected 358.6 (0.02)
Passed bias filter:                      566  (0.031569); expected 358.6 (0.02)
Passed Vit filter:                        70  (0.00390429); expected 17.9 (0.001)
Passed Fwd filter:                        24  (0.00133861); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.81u 0.29s 00:00:01.10 Elapsed: 00:00:00.51
# Mc/sec: 1983.87
//
Query:       KOO24888.1  [L=157]
Description: hypothetical protein Ctob_008539 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    0.00088   19.3   0.0     0.0017   18.4   0.0    1.4  1  RRM_3     RNA binding motif
  ------ inclusion threshold ------
      0.036   13.1   3.3      0.041   12.9   3.3    1.0  1  Paf1      Paf1


Domain annotation for each model (and alignments):
>> RRM_3  RNA binding motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.4   0.0   1.9e-07    0.0017      19     100 ..       2      87 ..       1      89 [. 0.86

  Alignments for each domain:
  == domain 1  score: 18.4 bits;  conditional E-value: 1.9e-07
                 HHHCHCCS-ECEEEE...-TTS.SEEEEEESSHHHHHHHHHHHHHC-B-CCTSSEEEEE--HHHHHHHHHHHHHHHHHCC---S-S CS
       RRM_3  19 kellsklgevayvdy...ekgd.kegevrFkedeeakkalekateaklkikdaevtlelLeGeeEkeywkkiledkqkkknnarek 100
                  e++ ++ +v++vdy   ++gd + g vr +++  a +a+  + +     + + v++elL Ge+   y + i++ ++ +++ ++ k
  KOO24888.1   2 NETFGRVAPVEFVDYgisNSGDvTVGFVRMATPVGAAEAVRILSAEGHCFHGHAVRYELLRGEALSAYTEMIIALRHSTAKARKVK 87 
                 58899999*******444455534699******99***************************************999988655544 PP

>> Paf1  Paf1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   3.3   4.6e-06     0.041     330     418 ..      67     153 ..      55     157 .] 0.56

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 4.6e-06
        Paf1 330 skkdklvvklrelneeelk..arekresefdpleeekeeeeeeeeeeeeekseeeeekeeekeeaeeeseaeseeessdeeeeeakselke 418
                 s+++++++ lr  +++ +k  + +  e++  p  ++ +ee e + +  e     ++e+++e++++ e++ a+ +++ +d++e+ +++ +k+
  KOO24888.1  67 SAYTEMIIALRHSTAKARKvkRDKWWERKHGPGTKAPKEEAEADANGGEV----QSEEQSEEQQEGEGRGAKRGRDGDDDSEPGGDGGSKR 153
                 56666666666666655441044555666555555544444443333333....4555555555666677777777777777766665555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (157 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       708  (0.0394891); expected 358.6 (0.02)
Passed bias filter:                      424  (0.0236488); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.42u 0.24s 00:00:00.65 Elapsed: 00:00:00.41
# Mc/sec: 1150.46
//
Query:       KOO24889.1  [L=3843]
Description: dynein heavy chain axonemal [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
   1.9e-154  513.5   0.0   1.2e-153  510.8   0.0    2.4  3  AAA_6           Hydrolytic ATP binding site of dynein motor r
   3.5e-123  411.6   1.5   3.5e-123  411.6   1.5    4.8  5  DHC_N2          Dynein heavy chain, N-terminal region 2
    1.3e-97  326.2   0.0    3.7e-97  324.7   0.0    1.8  1  AAA_8           P-loop containing dynein motor region D4
    8.1e-87  291.3   0.2    3.3e-85  286.0   0.0    2.9  3  Dynein_C        Dynein heavy chain C-terminal domain
    3.2e-72  241.8   0.0    8.9e-68  227.4   0.0    2.7  2  AAA_7           P-loop containing dynein motor region
    1.5e-68  230.2   2.4    1.5e-68  230.2   2.4    3.9  3  AAA_9           ATP-binding dynein motor region
    1.3e-56  190.9   0.0      3e-56  189.7   0.0    1.7  1  AAA_lid_11      Dynein heavy chain AAA lid domain
    4.4e-49  167.3  14.5    4.4e-49  167.3  14.5    1.7  2  MT              Microtubule-binding stalk of dynein motor
    2.3e-37  127.7   0.0    4.3e-33  113.9   0.0    3.9  2  Dynein_heavy    Dynein heavy chain region D6 P-loop domain
    2.3e-26   92.4   0.1    9.5e-26   90.4   0.1    2.2  1  Dynein_AAA_lid  Dynein heavy chain AAA lid domain
    1.1e-21   77.1   0.0    1.1e-21   77.1   0.0    4.2  3  DHC_N1          Dynein heavy chain, N-terminal region 1
    7.6e-20   71.3   0.1    3.7e-06   27.0   0.0    5.5  5  AAA_5           AAA domain (dynein-related subfamily)
    6.4e-15   55.2   1.5    2.7e-14   53.2   0.1    2.7  2  AAA_lid_1       AAA+ lid domain
    3.1e-06   27.7   0.1      0.065   13.6   0.0    4.1  3  AAA_16          AAA ATPase domain
    3.1e-05   24.4   1.8       0.59   10.6   0.0    4.4  4  AAA             ATPase family associated with various cellula
    0.00012   22.4   0.1       0.34   11.2   0.0    4.0  3  AAA_22          AAA domain
  ------ inclusion threshold ------
      0.014   15.9   0.1        3.4    8.2   0.0    3.7  2  AAA_18          AAA domain
      0.024   14.4   2.0         32    4.2   0.0    4.3  4  AAA_24          AAA domain
      0.042   14.2   1.2       0.69   10.3   0.2    3.2  2  DUF1376         Protein of unknown function (DUF1376)
        0.1   12.5   1.0       0.66    9.8   1.0    2.5  1  FTA4            Kinetochore complex Fta4 of Sim4 subunit, or 


Domain annotation for each model (and alignments):
>> AAA_6  Hydrolytic ATP binding site of dynein motor region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  510.8   0.0  1.4e-156  1.2e-153       1     327 []    1205    1532 ..    1205    1532 .. 0.99
   2 ?   -1.9   0.0       1.4   1.2e+03      12      56 ..    1835    1879 ..    1832    1899 .. 0.76
   3 ?   -2.7   0.0       2.5   2.3e+03     207     265 ..    2041    2102 ..    2039    2114 .. 0.74

  Alignments for each domain:
  == domain 1  score: 510.8 bits;  conditional E-value: 1.4e-156
       AAA_6    1 YgyeYlgnserLviTpltdrcyltltqAlklklggapaGpagtGKtEtvkdLakalakqvvvfncsdqldykslgkifkGlaqsGaWgCfdeFnrie 97  
                  YgyeYlgn +rLv+Tpltdrcy+tlt+Al+l+ gg p+GpagtGKtEtvkdL+k+lakq++vfncsd+ldykslg++f+Glaq+GaW+CfdeFnrie
  KOO24889.1 1205 YGYEYLGNPARLVVTPLTDRCYTTLTTALHLHRGGLPQGPAGTGKTETVKDLSKNLAKQCIVFNCSDGLDYKSLGRTFSGLAQTGAWSCFDEFNRIE 1301
                  9************************************************************************************************ PP

       AAA_6   98 levLSvvaqqiktiqqalkekkkkfvfegkeiklnksvgifitmnpgyagrteLPdnLkalfRpvammvPdlelIaeimLfseGfkeakelakklvt 194 
                  +evLSvvaqqi ti++a+++  ++f+feg+ei+l++++gif+tmnpgyagr+eLP+nLkal+Rp++mm+P+++lI+eimLf+eGf +ak l+kk++t
  KOO24889.1 1302 VEVLSVVAQQILTILNAVTQGVSRFMFEGREISLDPTCGIFVTMNPGYAGRSELPENLKALLRPMSMMTPNIDLIIEIMLFAEGFVTAKGLSKKMTT 1398
                  ************************************************************************************************* PP

       AAA_6  195 lykllseqlskqdhydfglralksvlkaagelkre.epeeseeelllralrdvnlpklvaeDvplfkglisdlFpgvelpesdyeeleeaieevlke 290 
                  ly l+ +qlskqdhydfglr++ksvl+ ag+lkr+ + + se++lllr++rd+n pk++ +D+plf++l+sdlFpg e p +dy +l+ a+e++l+ 
  KOO24889.1 1399 LYYLMVQQLSKQDHYDFGLRSIKSVLNSAGALKRDpNIHDSEDVLLLRSIRDMNAPKFIVQDMPLFNALMSDLFPGAEPPIVDYGSLQIALETELQL 1495
                  **********************************8677899******************************************************** PP

       AAA_6  291 kklqleekfvekviqlyetlkvrhgvmlvGetgsgKt 327 
                  ++lql +++++k+iq+ye + +rhg mlvG++++gKt
  KOO24889.1 1496 AGLQLVPSIIKKCIQCYESKLTRHGNMLVGQSLGGKT 1532
                  ************************************8 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 1.4
       AAA_6   12 LviTpltdrcyltltqAlklklggapaGpagtGKtEtvkdLakal 56  
                  Lv T  t r    lt  ++ +  + ++G  g GKt  v +   +l
  KOO24889.1 1835 LVPTVDTTRYTYLLTAFMRAERHTLITGDVGVGKTSVVFNALYSL 1879
                  78888888877778888999***************8876655555 PP

  == domain 3  score: -2.7 bits;  conditional E-value: 2.5
       AAA_6  207 dhydfglralksvlkaagelkreepeeseeel..llralrdvnlpklvae.Dvplfkglisd 265 
                   hy f+lr +  v + +   ++   ++++ ++   ++ +++v   +l+++ D + fk+l+s+
  KOO24889.1 2041 PHYIFNLRDISRVFQGVMLSQKPYFDTRDIVIrlWMHECHRVFADRLTNKpDREFFKELLSQ 2102
                  69***********9999988887776666543215677778888888764488888888765 PP

>> DHC_N2  Dynein heavy chain, N-terminal region 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.8   0.1      0.24   2.1e+02     224     303 ..     181     252 ..     175     260 .. 0.72
   2 ?   -2.1   0.7       1.8   1.6e+03       4      76 ..     508     588 ..     505     622 .. 0.53
   3 !  411.6   1.5  3.9e-126  3.5e-123       4     394 ..     643    1067 ..     640    1070 .. 0.95
   4 ?    3.3   0.0      0.04        36     374     397 .]    1683    1706 ..    1660    1706 .. 0.89
   5 ?   -3.4   0.4       4.2   3.8e+03     240     288 ..    2657    2707 ..    2651    2715 .. 0.58

  Alignments for each domain:
  == domain 1  score: 0.8 bits;  conditional E-value: 0.24
                 HHHHHHHHHHHT.THHHHHHTHHHHHHHHHHHHHHHHHHHHHHTTSGGGG...STTHHHHHHHHHHHHHHHHHHHHHHHH CS
      DHC_N2 224 vQrkWlyLepifssedirkqlpeeakrFksvdkewkkimkevskdpnvleatskpgllekleelneqlekiqksLneyLe 303
                   +k +y + +f se+ ++q + ++ + ++v k+ k +m+++++     +    ++  e  +e n+ +e i ++++e L 
  KOO24889.1 181 LRKKHVYPQELFISEQSAHQGSVKG-KLQDVHKQMKALMRSTHEI---FK----SDSDEVSREWNNFVESIDRGVEEALR 252
                 5678899999996655555544443.79************99874...44....34556677778888888888877775 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 1.8
                 XXXXXXXXXXXXXXXXXXXXXXXXX.....XXXXXX..XXXXXXXXXXXXXXXXXXXXXX......XXXXXXXXXXXXXXX CS
      DHC_N2   4 ikkelellkklwdlvsewqekleewkktpfkeldve..eleeevkellkklkklpkalke......wevakelkekieefk 76 
                 +++++e+l++ ++l+++++ +++e +  +++ l++e  + +  ++e   kl+k ++++k+       +  +++ ++ +ef+
  KOO24889.1 508 TEDRFEPLETQYRLLEKFEVTIKESELAKLAGLRTEwaTYKTMLQEAGFKLQKSKNDFKDeltatlASFNNQIIDQRNEFL 588
                 677899999999999999998888533444444333213333334444444444444444443233222222233333333 PP

  == domain 3  score: 411.6 bits;  conditional E-value: 3.9e-126
                  XXXXXXXXXXXXXXXXXXXXXXXXX.....XXXXXXXXXXXXXXXXXXXXXXXXXXXX......................XXXXXXXXXXXXXXXXX CS
      DHC_N2    4 ikkelellkklwdlvsewqekleewkktpfkeldveeleeevkellkklkklpkalke......................wevakelkekieefkev 78  
                  ++ el+ll+++w+++ +w++++++wk+++f++++v e+e  + ++ k+++kl+k++k                         v+ +lk+++e++k+ 
  KOO24889.1  643 TEVELDLLDQVWSMMANWTKNMDQWKTGKFASMNVPEIETVAADFGKQITKLAKEFKGgtggnwkvlgslkdrdgrliasDCVLGSLKDRVENIKKL 739 
                  6789***********************************************************888888888888877777777777999******* PP

                  XXXXXXXXXXXXXXXXXXXXXXXX...XXXXXXXX.XXXXXXXXXXX..XXXXXXXXXXXXXX-HHHHHHHHHHHHHHTS---EEEE-SSS.TEEE. CS
      DHC_N2   79 lplieelrnpalrerHwkelsellgv.ikdpdseesltlgdllelgl..leeeieeisekAtkEaslekalkkieeewkelefelteykdsgvfilk 172 
                  +pli++lrn+a+r+rHw++l+e +g+ ++   + +++tl+ +lelgl  +++ i  +s  A kE+++e+al kie+ w el+++l +yk+   + l+
  KOO24889.1  740 MPLIMDLRNEAMRPRHWNQLMEDVGKeFDP--YADTFTLNLILELGLehYADTISTLSGGAAKELAIEEALVKIEKLWGELTLDLAPYKEY--IKLR 832 
                  *************************86664..3446***********966**************************************976..8999 PP

                  .THHHHHHHHHHHHHHHHTCSSSTT..THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT.T.HHHHHHTHHHHHHHHHHHHHHHHHHHHHHTT CS
      DHC_N2  173 gvdeiielledhivklqsmksspyvkpfeeeveewekklsrlqeildewlkvQrkWlyLepifss.edirkqlpeeakrFksvdkewkkimkevskd 268 
                  +vd+++++led+ v l++mk+s+++ +f e +++wek ls+++e+++++++vQrkW+yLe+if + edir+qlp e++ F++v+ +w +++ ++++ 
  KOO24889.1  833 SVDDVYAALEDNAVLLSTMKASRFAIAFLEALDKWEKALSHVSETIEMMMNVQRKWMYLESIFVGsEDIRRQLPTESSLFDQVNADWISTTARMEAV 929 
                  9************************55**************************************77*****************************9 PP

                  SGGGG...STTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTHHHH-HHHHHHHHHTTTTSGGGHHHHHHHHSSEEEESE............EEEE CS
      DHC_N2  269 pnvleatskpgllekleelneqlekiqksLneyLekkRlafpRFyFlsddeLleilsqskdpsavqphlkkcFegiaslefee.......kkeitgm 358 
                  + + +at+ +g+le l+++ e+l++iqksL+eyLe+kR+afpRFyFls+d+Lleil+q++dp+avqph++kcFe+i+ l++++         e+ g+
  KOO24889.1  930 KIAYKATHLDGVLELLTKMDETLDRIQKSLDEYLETKRQAFPRFYFLSNDDLLEILGQARDPQAVQPHVRKCFEAIKILDMKDvgkggrqIFEAQGF 1026
                  99*******************************************************************************99****99989999** PP

                  EETTS-EEEEE.......E.EEEHHHHHHHHHHHHHHHHHH CS
      DHC_N2  359 iskegEkvelse.....argnveeWLneleeemkktlkell 394 
                   s+e E+v+l++     + g+ve WL ++e++m ++l + l
  KOO24889.1 1027 KSPESEYVKLEDnlrvtCGGPVEAWLLQIETSMCTQLAKDL 1067
                  **********979999999****************998765 PP

  == domain 4  score: 3.3 bits;  conditional E-value: 0.04
                  EEEHHHHHHHHHHHHHHHHHHHHH CS
      DHC_N2  374 nveeWLneleeemkktlkellkea 397 
                   ve+WL ++e++ ++tlk l++++
  KOO24889.1 1683 YVESWLMRVEDKSRETLKGLVDKC 1706
                  69****************999887 PP

  == domain 5  score: -3.4 bits;  conditional E-value: 4.2
                  HHHHTHHHHHHHHHHHHHHHHHHHHHHTTSGGGG.....STTHHHHHHHHH CS
      DHC_N2  240 irkqlpeeakrFksvdkewkkimkevskdpnvlea.ts.kpgllekleeln 288 
                   +k l +++++  +++ + k+im +++  ++  +  ++ k+ l+++ e++ 
  KOO24889.1 2657 AMKTLAKKQAQLADMEAKVKEIMDKAQVLKDKYDGgVAkKDALKSEAEQME 2707
                  467788888888888888888888775433222221110223444455554 PP

>> AAA_8  P-loop containing dynein motor region D4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  324.7   0.0  4.1e-100   3.7e-97       1     259 [.    2168    2425 ..    2168    2426 .. 0.99

  Alignments for each domain:
  == domain 1  score: 324.7 bits;  conditional E-value: 4.1e-100
       AAA_8    1 ldLvlfedaiehlarilRvlrqprghaLlvGvgGsGrqsltkLAafiaelelfqievtkkykekefredlkkllkkagikqkevvfllsdnqiiees 97  
                  +dLv+f dai  ++ri Rvl++pr+ha+lvGvgGsGrqsl++LAa+ia++++fqiev k y  + fredlkkl+++ag++++++ f+++d+q+ie s
  KOO24889.1 2168 MDLVMFGDAIGNVCRIKRVLSMPRSHAMLVGVGGSGRQSLSRLAAYIAGFKIFQIEVVKGYRSELFREDLKKLYDRAGVQGQDTLFIFNDTQVIESS 2264
                  99*********************************************************************************************** PP

       AAA_8   98 fledinnlLntGevpnLfskeekeeiieelrkeakkqgvedskesllnffikrvrenLhivlcmspvgeafrsrlrkfpsLvncttidwfqeWPeea 194 
                  fledin +L++Gev+nL+  +e++ i e++r+e++++g  ++++s+++ffi++vr+++h+ lcmspvge++r+++r+fp+Lv+ctti+wf eWP +a
  KOO24889.1 2265 FLEDINGILTSGEVSNLYPPDELAPIRESVRQEVRNAGLPENNDSMYSFFIEKVRSKMHLSLCMSPVGENYRNYVRMFPALVSCTTINWFSEWPPDA 2361
                  ************************************************************************************************* PP

       AAA_8  195 LleVaekvleeeeeieeelkesivkvlvevhssveelsekfleelkrkiyvtpksylellktykk 259 
                  L+eVa+++le+ +e+++el + ++++++++++sv   s+++l++l r +yvtp++ylel+k y k
  KOO24889.1 2362 LKEVATRFLES-VELSKELLDPVSTIFAQTQTSVIAESASMLARLGRPNYVTPTNYLELVKGYCK 2425
                  *********99.99************************************************975 PP

>> Dynein_C  Dynein heavy chain C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.8   0.0      0.13   1.1e+02      56     109 ..    1109    1165 ..    1054    1173 .. 0.70
   2 ?   -4.3   1.0       9.1   8.1e+03       3      88 ..    2475    2563 ..    2473    2571 .. 0.52
   3 !  286.0   0.0   3.6e-88   3.3e-85      25     307 .]    3565    3839 ..    3547    3839 .. 0.90

  Alignments for each domain:
  == domain 1  score: 1.8 bits;  conditional E-value: 0.13
                  ........-HHHHHHHHHHHHHHHHHHHHHHHHHHHHC.---------HHHHHHHHH CS
    Dynein_C   56 k..pteyeeplntvllqElerfnkLleeirrsLkelqk.aikGevvmseeleelans 109 
                  +  + + + p++ v ++ ++ +nkL + +r +L +l++  +   +++  + +++++ 
  KOO24889.1 1109 TmsEGGGKAPMKSVKKKQVSALNKLCDMVRGNLGKLDRkKVVNIITVEVHSRDVIDR 1165
                  134677899**************************9751344444455555555555 PP

  == domain 2  score: -4.3 bits;  conditional E-value: 9.1
                  HHHHHHHHHHH.......CCCTTT-------..CCH.--------------..-.---..........-HHHHHHHHHHHHHHHHHHHHHHHHHH CS
    Dynein_C    3 eteellstlls.......lqpressssgsggssree.kvlelaadileklpelf.dleeaekkpteyeeplntvllqElerfnkLleeirrsLke 88  
                  eteell  +++        q++ ++++++ g  ++e +++++a+d ++ l +++  le      t+  e ln     E++ + k  + ++++L++
  KOO24889.1 2475 ETEELLVVIVQenhvvaeEQKKVNTEKEKIG--KDEvETRKIADDAQADLDKAMpALE----AATKALEGLNKKDISEVKAYAKPHKLVEKTLEA 2563
                  6666666666322221112222222222222..2235888888888888776321222....234556666666666666666666666666665 PP

  == domain 3  score: 286.0 bits;  conditional E-value: 3.6e-88
                  --..CCH--------------..----..........-HHHHHHHHHHHHHHHHHHHHHHHHHHHHC---------HHHHHHHHHHHHTS--GGG.- CS
    Dynein_C   25 ggssreekvlelaadileklpelfdleeaekkpteyeeplntvllqElerfnkLleeirrsLkelqkaikGevvmseeleelansllngkvPesWak 121 
                  g+   e++v+ la d+++ +pe +++ +  +  +++ + l +vl+qEl+r+n Ll +ir+sL  ++k+ikG+vvms++l+ ++n+llng+vP++W +
  KOO24889.1 3565 GNAMLEDMVYGLAGDLISAMPEPINIYQ--RLGEGDGTALHVVLVQELQRYNLLLGKIRSSLALVKKGIKGLVVMSPDLDVIYNKLLNGQVPPAWLA 3659
                  3344678**************9888884..3368999**********************************************************65 PP

                  ----SS--HHHHHHHHHHHHHHHHHHH---.....B-GGGSS-HHHHHHHHHHHHHHHTT-----EE--EE---.............-EEE-SEEEE CS
    Dynein_C  122 ksypslkplgsWvrdLleRvkqlqkwleeegkPkvfwLsgfffPqaFLtavlqnyarknkipideltfefevtkkekeeeaeeepedGvyihGLfle 218 
                  + ypslkpl+sW rdLl R+ ql +w+ e+g+PkvfwL gf++P++FLta++q+ ar+ +++id+l ++f +++  +e++++++p++G+y++GLfle
  KOO24889.1 3660 T-YPSLKPLASWARDLLLRWGQLMEWC-EKGPPKVFWLAGFTYPNGFLTALMQTEARAVNVSIDSLMWDFPIVN-LEEKDVTAPPKEGAYVRGLFLE 3753
                  5.*************************.6799*****************************************6.577889**************** PP

                  SSEE..ETTCEE-SS...SEEEES-EEEE-E----TS.....EEEEEESSTT--SE.........EEEEEE......-BHHHTTT-EEES CS
    Dynein_C  219 GarwdkkegvLaesepkelfselPvihlkpveakkkekkkkkyecPvYktseRrgvlstthstnfvfsvdLptk.kpeehwilrgvalll 307 
                  Ga w+++++ L+e+ep+el+ ++P++h+kp+e+kk  k+k  y cP+Y ++ R+g+++++   +f++++d+++   ++e wi+rg+alll
  KOO24889.1 3754 GAGWNYDASNLCEPEPMELVYNMPMLHFKPIESKKS-KAKGMYACPLYLYPLRTGSRERP---SFMLYIDIKSGaVEPEVWIKRGTALLL 3839
                  ******************************987777.55557***********9986665...9*******99536699*********96 PP

>> AAA_7  P-loop containing dynein motor region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.5   0.0   0.00018      0.16      13      64 ..    1216    1266 ..    1213    1278 .. 0.83
   2 !  227.4   0.0   9.9e-71   8.9e-68       1     181 []    1823    2002 ..    1823    2002 .. 0.99

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.00018
       AAA_7   13 lVptvdtvrysyllelllknkkpvllvGptGtGKtviikdllkkldkekyls 64  
                  lV t  t r+ + l++ l+ ++  l  Gp+GtGKt ++kdl k+l k ++++
  KOO24889.1 1216 LVVTPLTDRCYTTLTTALHLHRGGLPQGPAGTGKTETVKDLSKNLAK-QCIV 1266
                  567777788888899999999999*********************94.4433 PP

  == domain 2  score: 227.4 bits;  conditional E-value: 9.9e-71
       AAA_7    1 feideeakfseilVptvdtvrysyllelllknkkpvllvGptGtGKtviikdllkkldkekylsltinfsaqtsanqlqdiiesklekrrkgvygPp 97  
                  ++ +++a+f++ilVptvdt+ry+yll+ ++++++++l++G++G+GKt+++ + l +ld e++++ ++nfsaqts+ ++ + ies++ekr+k+++ Pp
  KOO24889.1 1823 WKPPPDAPFYKILVPTVDTTRYTYLLTAFMRAERHTLITGDVGVGKTSVVFNALYSLD-ESFVFSNLNFSAQTSSVRVSEGIESRVEKRTKDTFAPP 1918
                  57899*****************************************************.************************************** PP

       AAA_7   98 ggkklvvFvDDlnmpakekygaqppiellRqlldyggwYdrkklefkeikdvqlvaamgppgggrneitpRllrhfnvlaitep 181 
                  ggkkl+vF+DD+nmp+ke +gaqpp+e+lRq+++y++wYd+kk + + ikdv+l+a mg+pgggr+ i++R l++f+vl++t+p
  KOO24889.1 1919 GGKKLIVFIDDFNMPEKEIFGAQPPLEILRQWMQYEFWYDLKKQTQRFIKDVKLLAGMGHPGGGRTMISKRTLHKFHVLNMTFP 2002
                  *********************************************************************************987 PP

>> AAA_9  ATP-binding dynein motor region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.8   0.1    0.0018       1.6      79     195 ..     240     360 ..     214     370 .. 0.79
   2 ?   -1.1   0.0      0.96   8.6e+02       1      13 [.    2799    2811 ..    2799    2815 .. 0.89
   3 !  230.2   2.4   1.7e-71   1.5e-68      34     220 .]    2816    3004 ..    2810    3004 .. 0.96

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 0.0018
                 .SSHHSTTHHHHTTCCEE..CEEEES.....SSE.EE--SSCEEEEEESSTTSHHHHHHHHHSEEEE---SSHHH.HHHHHHHHHHH..HHHHHHHHHH CS
       AAA_9  79 geeldpiLepvLekeiikkgrklikl.....gdkeieysenFrLylttklsnphyspeiaakvtlinFtvteeGL.edqlLaevvkk..erpeleekke 169
                  e++d  +e+ L++   +   +l++l     gd + e++  Fr+ ++ + s+++++p+ia  ++ +n  v ++++ +   + ++v    + p+ e+k+ 
  KOO24889.1 240 VESIDRGVEEALRQTAKR---SLLELsrsinGDAKTEVQALFRISVVLQTSKVEFKPSIAELTQTVNT-VSRDAIaTTSAMPRLVDAlrDDPDAESKHP 334
                 477888888888765544...33333333347899********************************5.555555155677888875226789999999 PP

                 HHHHHHHHHHHHHHHHHHHHHHHHHH CS
       AAA_9 170 eliqeeaenkkqlkeledklLeeLse 195
                 +   ++++++  l+ l +++L+ L +
  KOO24889.1 335 SFYANISNDEDVLRVLVQDVLRVLVQ 360
                 99999999999999999999998866 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 0.96
                  .HHH.HT--STHH CS
       AAA_9    1 reWnlqgLPsDel 13  
                  r+Wn+qgLP+D l
  KOO24889.1 2799 RDWNIQGLPADAL 2811
                  58*********87 PP

  == domain 3  score: 230.2 bits;  conditional E-value: 1.7e-71
                  STTHHHHHHH.......HEESTTSTTHHHHHHHHHHTTSEEEESTT.SSHHSTTHHHHTTCCEE...CEEEESSSE.EE--SSCEEEEEESSTTSHH CS
       AAA_9   34 qgqankwiknkekek.lkviklsdkkflktLenairfGkplliedvgeeldpiLepvLekeiikkg.rkliklgdkeieysenFrLylttklsnphy 128 
                   +qankw++n+ek + lk+i+l+++++l+tLenai+fG+p+l+++v +eldp+Lep+++++++k g r++iklgdke++y+++F++ylttkl+nphy
  KOO24889.1 2816 RQQANKWVRNMEKANgLKLITLKQSDYLRTLENAIQFGQPVLMQEVLQELDPSLEPIMSRAVVKVGnRSIIKLGDKEVDYNPDFKFYLTTKLANPHY 2912
                  579********55555************************************************755****************************** PP

                  HHHHHHHSEEEE---SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSSSSTHHHHHHHHHHHHHHHHHH CS
       AAA_9  129 speiaakvtlinFtvteeGLedqlLaevvkkerpeleekkeeliqeeaenkkqlkeledklLeeLseaegniLedeelietLeksKktaeei 220 
                  +pei++k+t++nF v+++GLedqlL++vv+kerpele +k++l+   a+ k++l eledk+L +L++aeg++L++eeli tL++sK+t+ ++
  KOO24889.1 2913 TPEISTKATIVNFCVKQQGLEDQLLGTVVRKERPELEMQKNDLVVAVAAGKRKLVELEDKILFMLAHAEGSLLDNEELILTLQTSKTTSMDV 3004
                  ****************************************************************************************9876 PP

>> AAA_lid_11  Dynein heavy chain AAA lid domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  189.7   0.0   3.4e-59     3e-56       1     164 []    3393    3556 ..    3393    3556 .. 0.92

  Alignments for each domain:
  == domain 1  score: 189.7 bits;  conditional E-value: 3.4e-59
                  HHHHHHHHCT-HHHHT............HHHHHHHHHHHHHHHHHGGGGTTTS-SS-----HHHHHHHHHHHHHHHHHCSSGGS-HHHHHHHHHHTT CS
  AAA_lid_11    1 kanllraysnesekideeffee..keeefkkllfsLcffHavvqeRrkFgplGwnipYeFnesdleisvevlkmyldeyeekevpwealkyligein 95  
                  kan++r+ +n    ++ e fe+  k +++kkll+++c+fHav+++RrkF  lGwnipY+Fn+sd+e+s  +l+ yldey+  ++pw+al+yli+ein
  KOO24889.1 3393 KANMTRLVNN----LSVEKFEScgKPAKYKKLLYAMCWFHAVLVDRRKFLHLGWNIPYDFNDSDFEVSELCLRLYLDEYD--QTPWDALRYLIAEIN 3483
                  89******77....333446555899******************************************************..*************** PP

                  TSTT--SHHHHHHHHHHHHHHSSGGGGSTT....-..T...E---SSHHHHHHHHCTS-SS--CCCCTS-TTH CS
  AAA_lid_11   96 YGGrvtDdwDrrllktyleeffseevleee.yk.s..geykipeeksleeyleyieslpladspevfglhena 164 
                  YGGrvtDd+Drrl++ty+ +ff+++++++  +k s   +y ipe++ l  y+e++  lp  d+pe+fg+h+na
  KOO24889.1 3484 YGGRVTDDMDRRLMNTYMAQFFCDDAIQTAnFKlSslSSYVIPEDGPLPMYKEVCAGLPAIDRPEAFGQHQNA 3556
                  ***************************865444525778*********************************8 PP

>> MT  Microtubule-binding stalk of dynein motor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.2   0.2       7.3   6.5e+03      15      58 ..     465     508 ..     459     513 .. 0.57
   2 !  167.3  14.5   4.9e-52   4.4e-49       2     341 ..    2440    2772 ..    2439    2775 .. 0.97

  Alignments for each domain:
  == domain 1  score: -4.2 bits;  conditional E-value: 7.3
          MT  15 aqvddlkaklaaqevelkqknedadkliqvvgvetekvskekai 58 
                 +++++l  ++ +  ++l+qk ++ d l +++ +    v  +ka 
  KOO24889.1 465 TELQELLDHMESCRTKLAQKPKNLDMLADMIKLHETEVLSQKAT 508
                 34445555555556666666666666666666655555555555 PP

  == domain 2  score: 167.3 bits;  conditional E-value: 4.9e-52
          MT    2 rlengllklqstaaqvddlkaklaaqevelkqknedadkliqvvgvetekvskekaiadeeekkvavinkevkkkqkdceedlakaepallaaqeal 98  
                  +l+ngl kl  ta qv ++   l  ++  ++  + ++++l+ v+  e + v+ e+   + e++k+   + e +k + d + dl ka pal aa +al
  KOO24889.1 2440 KLKNGLQKLSDTAIQVGEMSVELEKKKKVVAIAQTETEELLVVIVQENHVVAEEQKKVNTEKEKIGKDEVETRKIADDAQADLDKAMPALEAATKAL 2536
                  699**********************999999999999****9*999******************999999999999********************* PP

          MT   99 ntlnktnltelksfgsppdavvnvaaavmvllaprgkvpkdrswkaakivmakvdafldslinfdkenihenclkaikeylndpefepefiksksla 195 
                  + lnk++++e+k++  p + v +   avmvl         + sw  ak  m+   +fl+ linfdk+ ++++ l+ + +y ++ +f+p  + + s+a
  KOO24889.1 2537 EGLNKKDISEVKAYAKPHKLVEKTLEAVMVLRRS------EPSWTEAKKQMGD-PGFLNQLINFDKDSLNDQVLQKVSKYTKEADFDPVVVGGISVA 2626
                  *******************************864......57*********97.69***************************************** PP

          MT  196 aaglcswvinivrfyevycdvepkrqalekanaelaaaqeklaaikakiaelnanlaeltaafekatadklkcqqeaeatartislanrlvgglase 292 
                  +  +c wv  +  + ++  dv+pkr  l+ a + la+ q +la + ak+ e+ ++   l  +++   a+k   + eae  ++ ++ a  lv gl  e
  KOO24889.1 2627 CKSMCLWVRAMEVYGKIAKDVAPKRAKLQAAMKTLAKKQAQLADMEAKVKEIMDKAQVLKDKYDGGVAKKDALKSEAEQMEVLLARASNLVEGLGGE 2723
                  ********99999999********************************************************************************* PP

          MT  293 nvrwaeavenfksqektlcgdvllitafvsyvgfftkkyrqelldrlwl 341 
                    rw  ++  + ++ k   gd ll +af+sy g f  +yrq ll+  wl
  KOO24889.1 2724 RARWEISILSLDENLKNTVGDCLLAAAFLSYCGPFDSEYRQRLLEGNWL 2772
                  *********************************************9997 PP

>> Dynein_heavy  Dynein heavy chain region D6 P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.6   0.0      0.66   5.9e+02      42      98 ..    2840    2909 ..    2815    2923 .. 0.73
   2 !  113.9   0.0   4.8e-36   4.3e-33       2     119 .]    3253    3392 ..    3252    3392 .. 0.86

  Alignments for each domain:
  == domain 1  score: 0.6 bits;  conditional E-value: 0.66
                    HHHHHHHHHHHHHT-EEEEE-GGG-CCCHHHHHHH......................HHTT-EEEEEEES-T CS
  Dynein_heavy   42 eeaekalekaakegsWvlLqNchlapswlkeLekileel...............eeklhssfRlwltsepsp 98  
                    +   ++le+a++ g+ vl+q++       ++Le i++++               e + +++f+ +lt++ ++
    KOO24889.1 2840 SDYLRTLENAIQFGQPVLMQEVLQE--LDPSLEPIMSRAvvkvgnrsiiklgdkEVDYNPDFKFYLTTKLAN 2909
                    3557899999999999999998655..445777775544555677777777877777889******998765 PP

  == domain 2  score: 113.9 bits;  conditional E-value: 4.8e-36
                    TTS-EEEEE-TT--THHHHHHHHHHT.....................T--EEEEETTSHHHHHHHHHHHHHHHHT-EEEEE-GGG-CCCHHHHHH CS
  Dynein_heavy    2 pttPvlfilspgadptesleklakkl.....................kklvksvslGqgqeeeaekalekaakegsWvlLqNchlapswlkeLek 75  
                    p  P++f+lspg+dpt++l +l++ +                     +   + +s    + + a k+++ ++ eg+WvlL Nchl+ swl eL+k
    KOO24889.1 3253 PDLPLIFVLSPGVDPTNQLSQLGEAKgipfssialgqgqaraaechsDWIASLISARARHAPLAVKLIDAGIAEGHWVLLANCHLMESWLGELDK 3347
                    678*********************996666666666666555555443344566666667777889***************************** PP

                    H........HHTT-EEEEEEES-TTS-HHHHHTSEEEEE---SSH CS
  Dynein_heavy   76 ileel.eeklhssfRlwltsepspkfPislLqssikvtnepPkgl 119 
                    i+e+l ++k +++fRlwl+s p+++fPi++Lq++ik+t+epPkgl
    KOO24889.1 3348 IIESLpTRKPNKEFRLWLSSAPKDSFPIGILQRAIKMTTEPPKGL 3392
                    ***9999999*********************************97 PP

>> Dynein_AAA_lid  Dynein heavy chain AAA lid domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   90.4   0.1   1.1e-28   9.5e-26       1     129 []    1699    1817 ..    1699    1817 .. 0.95

  Alignments for each domain:
  == domain 1  score: 90.4 bits;  conditional E-value: 1.1e-28
  Dynein_AAA_lid    1 leelfeklvepclefvrkkckeivpvtdlnlvqslcrllealldefeekeeesadeeleeeeleevleklflfalvWSiGatldedsrekfde 93  
                      l+ l++k+++++++  +++cke+vp+  +++++++c +++a+ +    +++    +++++e  ++++e +flf+l+WS+G+t+d+dsr+ +d 
      KOO24889.1 1699 LKGLVDKCFPKMITIRENRCKEPVPTASVAVARNTCIMYDAFATA---ENGV---NSADPEGYTRLIELWFLFSLMWSMGGTVDDDSRKLIDA 1785
                      57899****************************************...6665...799999******************************** PP

  Dynein_AAA_lid   94 flrelleealklppeegtvyDyffdketgkWkpWee 129 
                       +rel +   ++p  +++v+Dyf+d + +kW +Wee
      KOO24889.1 1786 AMRELDA---QIP-LKDSVFDYFVDFKAKKWAHWEE 1817
                      *****88...898.99******************96 PP

>> DHC_N1  Dynein heavy chain, N-terminal region 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   77.1   0.0   1.2e-24   1.1e-21     419     557 ..       2     152 ..       1     156 [. 0.92
   2 ?   -0.6   0.1      0.44     4e+02     252     315 ..     203     263 ..     188     342 .. 0.67
   3 ?    1.1   1.6      0.13   1.2e+02     138     271 ..     567     699 ..     459     703 .. 0.78

  Alignments for each domain:
  == domain 1  score: 77.1 bits;  conditional E-value: 1.2e-24
      DHC_N1 419 kkynelakkLkeyerklfeeWleeveekseeklkrpLLvredettk...........llevNFdpellallrEvkylqrlgfevPesakniak..qeek 504
                 + y  l ++ +e+ r++f+eW  ++++  +  l+  L++r + t +            +   Fd+ ll l  Ev+++++l+fevP+sa+++a+   +e+
  KOO24889.1   2 EAYAALDNSPDEFIRRMFSEWITSIDAGISRFLETFLMQRLT-TMElvgktwrerygYVAQAFDKSLLHLSSEVHHWEKLRFEVPYSAMEVASgpPRER 99 
                 5688899999********************99********54.4447888888999855689******************************96679** PP

      DHC_N1 505 lrkyaesLellvreynrilesllpverpLlaeelkeldaklepGltklnWnsl 557
                 +r ++e++  lvr yn+ l++l+p+e +L++e+l  ld+k+ pGl+kl+Wn +
  KOO24889.1 100 YRCLREKVLALVRGYNQFLSQLTPQECRLFSERLVFLDRKMGPGLSKLTWNAK 152
                 **************************************************976 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 0.44
      DHC_N1 252 legqieeileefeeaveklksksydvLdvsaeefeadfkeFkerikd.lerrlqaiinqafedas 315
                 ++g+++++++     ++ l + +++++  ++ e  ++ ++F e+i++ +e+ l++  + ++ ++s
  KOO24889.1 203 VKGKLQDVHK----QMKALMRSTHEIFKSDSDEVSREWNNFVESIDRgVEEALRQTAKRSLLELS 263
                 4444444444....666666667788888888888888888888876567777777766665443 PP

  == domain 3  score: 1.1 bits;  conditional E-value: 0.13
      DHC_N1 138 erivsLlekisnqlieqckkylnpeelfgqeveeaikklkeaielleawkeeyeektrekleesp.......kekpwefdeksiFarldafleRlekll 229
                 + +++ l  + nq+i+q  ++l  +      +  a+  ++ea++l+++++e++ + +r+k ++++        + p + ++ s   +ld   +   ++ 
  KOO24889.1 567 DELTATLASFNNQIIDQRNEFLR-N-----APFTAEVSVEEALALIAQYRESV-KMIRAKENDMKaglgifaIDPPVNAETASTEVELDLLDQVWSMMA 658
                 55666677788999999999998.3.....33468899999***********9.589988885555566666666677766666678999999999999 PP

      DHC_N1 230 elfetieqfsklekvggtkgkelegqieeileefeeaveklk 271
                 + +++++q+ k  k+ + +++e+e++  ++ +++ ++ +++k
  KOO24889.1 659 NWTKNMDQW-KTGKFASMNVPEIETVAADFGKQITKLAKEFK 699
                 999999999.77777557888888887777777777777776 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.3   0.0   0.00014      0.12       5     135 ..    1242    1360 ..    1240    1363 .. 0.78
   2 !   22.8   0.0   8.2e-08   7.4e-05      29     137 ..    1564    1667 ..    1521    1668 .. 0.80
   3 !   27.0   0.0   4.2e-09   3.7e-06       1     137 [.    1857    1993 ..    1857    1994 .. 0.86
   4 ?    1.2   0.0      0.39   3.5e+02       2      37 ..    2194    2229 ..    2193    2244 .. 0.82
   5 ?   -1.7   0.0         3   2.7e+03      22      56 ..    2984    3019 ..    2975    3025 .. 0.82

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 0.00014
                  E--SSSSHHHHHHHGGGGBS--EEEEE--TT--HHHHH--B--.........--------G-SEEEEESGGG--HHHHHHHHHHHHSSEEE..-SSS CS
       AAA_5    5 vGppGtgKselaerlaaalnreveyvqltrdtteedlkgrreikngttslvdsplvraaregeilvlDEveraesevlnsLlslleerrllleegge 101 
                  +Gp GtgK+e ++ l++ l ++  + ++++++ ++ l    +                a++g+  ++DE++r+e evl+++ + + +    + +g  
  KOO24889.1 1242 QGPAGTGKTETVKDLSKNLAKQCIVFNCSDGLDYKSLGRTFS-----------G---LAQTGAWSCFDEFNRIEVEVLSVVAQQILTILNAVTQGVS 1324
                  6************************************88888...........3...4699************999988776555555444455555 PP

                  EEE---........-EEEEEESS--.-TT-TTHHHH CS
       AAA_5  102 lvkakndd.ller.frviatanpldrslnelspalr 135 
                  +  ++  +  l +   ++ t+np + +++el ++l+
  KOO24889.1 1325 RFMFEGREiSLDPtCGIFVTMNPGYAGRSELPENLK 1360
                  554444443333349999999999999999888887 PP

  == domain 2  score: 22.8 bits;  conditional E-value: 8.2e-08
                  EEE--TT--HHHHH--B--.........--------.........G-SEEEEESGGG--HHHHHHHHHHHHSSEEE..-SSSEEE---......-EE CS
       AAA_5   29 yvqltrdtteedlkgrreikngttslvdsplvraar.........egeilvlDEveraesevlnsLlslleerrllleeggelvkaknddllerfrv 116 
                   + +++  ++++l g++++  +t +++d++l + +r         e+++l+++ v+   + +++s++++l++++ll+  +ge++  +++     +++
  KOO24889.1 1564 LIINPKAVPSSNLYGEYDL--QTFEWTDGVLAEVMRevcsdesltEKWLLLDGPVD---TLWIESMNTVLDDNKLLTLINGERIAMPPQ-----VSL 1650
                  56778999**********8..***********************888888888898...99***********************99996.....9** PP

                  EEEESS--.-TT-TTHHHHTT CS
       AAA_5  117 iatanpldrslnelspalrsR 137 
                  +++ ++l+     +spa++sR
  KOO24889.1 1651 LFEVEDLS----VASPATVSR 1667
                  ****9999....888999988 PP

  == domain 3  score: 27.0 bits;  conditional E-value: 4.2e-09
                  EEEEE--SSSSHHHHHHHGGGGB..S--EEEEE--TT--HHHHH--B--.........--------G-SEEEEESGGG--HHHHHHHHHHHHSSEEE CS
       AAA_5    1 dvlLvGppGtgKselaerlaaal..nreveyvqltrdtteedlkgrreikngttslvdsplvraaregeilvlDEveraesevlnsLlslleerrll 95  
                  + l+ G+ G+gK++++   +  l     +   +++++t++  +  ++e  ++ +++++  +   + ++ i+++D++++ e+e++++  ++le  r +
  KOO24889.1 1857 HTLITGDVGVGKTSVVFNALYSLdeSFVFSNLNFSAQTSSVRVSEGIE--SRVEKRTKDTFAPPGGKKLIVFIDDFNMPEKEIFGAQ-PPLEILRQW 1950
                  5799*******************4444444555666666666666666..899999******************************9.999999999 PP

                  ..-SSSEEE---.......-EEEEEESS--.-TT-TTHHHHTT CS
       AAA_5   96 leeggelvkakndd.llerfrviatanpldrslnelspalrsR 137 
                  +   +++  +k+++ +++++ ++a +  + +++  +s++++  
  KOO24889.1 1951 MQYEFWYDLKKQTQrFIKDVKLLAGMGHPGGGRTMISKRTLHK 1993
                  9**************************9999998888887765 PP

  == domain 4  score: 1.2 bits;  conditional E-value: 0.39
                  EEEE--SSSSHHHHHHHGGGGBS--EEEEE--TT-- CS
       AAA_5    2 vlLvGppGtgKselaerlaaalnreveyvqltrdtt 37  
                   +LvG  G+g+ +l++  a   + +++ +   ++++
  KOO24889.1 2194 AMLVGVGGSGRQSLSRLAAYIAGFKIFQIEVVKGYR 2229
                  69**************99999888888776666555 PP

  == domain 5  score: -1.7 bits;  conditional E-value: 3
                  GB.S--EEEEE--TT--HHHHH--B--......... CS
       AAA_5   22 al.nreveyvqltrdtteedlkgrreikngttslvd 56  
                  +l n e+   + t++tt+ d++ +++i+++t++  d
  KOO24889.1 2984 LLdNEELILTLQTSKTTSMDVTNQLHIAEQTEKKID 3019
                  44688888889999*************988887766 PP

>> AAA_lid_1  AAA+ lid domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.2   0.1     3e-17   2.7e-14      24      90 ..    2042    2108 ..    2037    2115 .. 0.91
   2 ?   -1.6   0.1       3.5   3.1e+03      16      79 ..    3437    3498 ..    3429    3508 .. 0.74

  Alignments for each domain:
  == domain 1  score: 53.2 bits;  conditional E-value: 3e-17
   AAA_lid_1   24 hyvfnlrdlsnifqgllfssaevlkapldlirlylheservygdkmveekdlellekvtlevakkff 90  
                  hy+fnlrd+s +fqg++ s    + +   +irl++he++rv+ d++ ++ d e ++ +  + +  +f
  KOO24889.1 2042 HYIFNLRDISRVFQGVMLSQKPYFDTRDIVIRLWMHECHRVFADRLTNKPDREFFKELLSQKVVSVF 2108
                  **************************9999*************************998776665555 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 3.5
   AAA_lid_1   16 flptaikfhyvfnlrdlsnifqgllfssaevlkapldlirlylheservygdkmveekdlelle 79  
                  fl  +  + y fn  d+      l     e  ++p+d +r  + e +  yg ++ ++ d  l++
  KOO24889.1 3437 FLHLGWNIPYDFNDSDFEVSELCLRLYLDEYDQTPWDALRYLIAEIN--YGGRVTDDMDRRLMN 3498
                  5555566667777777766666666666788899******9999887..899999998877665 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.7   0.0    0.0023       2.1      30      63 ..    1242    1272 ..    1226    1364 .. 0.74
   2 !   13.6   0.0   7.3e-05     0.065      18      67 ..    1849    1897 ..    1844    1914 .. 0.74
   3 ?   -2.7   0.0       7.7   6.9e+03     129     145 ..    1915    1931 ..    1909    1942 .. 0.86

  Alignments for each domain:
  == domain 1  score: 8.7 bits;  conditional E-value: 0.0023
      AAA_16   30 sGesGvGKsslvrellralekdggiflrgkcdql 63  
                   G++G+GK+  v+ l + l k+ ++f   +c + 
  KOO24889.1 1242 QGPAGTGKTETVKDLSKNLAKQCIVF---NCSDG 1272
                  5*********************4444...33333 PP

  == domain 2  score: 13.6 bits;  conditional E-value: 7.3e-05
      AAA_16   18 rvrsgrpelvllsGesGvGKsslv.rellralekdggiflrgkcdqlesai 67  
                  ++ +  ++ +l++G+ GvGK+s+v ++l+ +l ++ ++f + ++   +s++
  KOO24889.1 1849 TAFMRAERHTLITGDVGVGKTSVVfNALY-SLDES-FVFSNLNFSAQTSSV 1897
                  556667799***************55555.99999.888777777665554 PP

  == domain 3  score: -2.7 bits;  conditional E-value: 7.7
      AAA_16  129 llsrderplvlvlDdlq 145 
                  ++++++++l++++Dd+ 
  KOO24889.1 1915 FAPPGGKKLIVFIDDFN 1931
                  56777889*******95 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.6   0.0   0.00066      0.59       5      37 ..    1243    1276 ..    1240    1328 .. 0.79
   2 !    9.3   0.0    0.0016       1.4       2      67 ..    1859    1930 ..    1858    1936 .. 0.67
   3 ?   -1.6   0.0       3.7   3.3e+03       5      23 ..    1977    1995 ..    1975    2023 .. 0.78
   4 ?   -1.8   0.0       4.4   3.9e+03       2      42 ..    2195    2236 ..    2194    2257 .. 0.74

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00066
                  SSTTSSHHHHHHHHHHHHTHEEEEEETTTCS.SS CS
         AAA    5 GppGtGKTllakavakelgvefleisgsell.sk 37  
                  Gp GtGKT ++k + k+l  +++ +++s+ l  k
  KOO24889.1 1243 GPAGTGKTETVKDLSKNLAKQCIVFNCSDGLdYK 1276
                  9**************************9988333 PP

  == domain 2  score: 9.3 bits;  conditional E-value: 0.0016
                  EEESSTTSSHHHHHHHHHHHHT..HEEEEEETTTCSSS......STTHHHHHHHHHHHHHHHTS..TSEEEEEETG CS
         AAA    2 llyGppGtGKTllakavakelg..vefleisgsellsk......yvgesekkirelfkeakeka..kpsilfiDEi 67  
                  l++G  G+GKT+++     +l+  + f +++ s  +s+      + +  ek+++++f+        k+ i+fiD++
  KOO24889.1 1859 LITGDVGVGKTSVVFNALYSLDesFVFSNLNFSAQTSSvrvsegIESRVEKRTKDTFAP----PggKKLIVFIDDF 1930
                  789***********999999963344566666666644443333444445555555544....354569*****97 PP

  == domain 3  score: -1.6 bits;  conditional E-value: 3.7
                  SSTTSSHHHHHHHHHHHHT CS
         AAA    5 GppGtGKTllakavakelg 23  
                  G pG G+T++ k   ++++
  KOO24889.1 1977 GHPGGGRTMISKRTLHKFH 1995
                  99********999888853 PP

  == domain 4  score: -1.8 bits;  conditional E-value: 4.4
                  EEESSTTSSHHHHHHHHHHHHTHEEEEEETTTCS.SSSTTHH CS
         AAA    2 llyGppGtGKTllakavakelgvefleisgsell.skyvges 42  
                  +l+G  G G+ +l +  a  +g+++++i++ +   s+++ e 
  KOO24889.1 2195 MLVGVGGSGRQSLSRLAAYIAGFKIFQIEVVKGYrSELFRED 2236
                  799*********************999998776634444443 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.3   0.0     0.025        22      12      51 ..    1243    1273 ..    1240    1287 .. 0.83
   2 !   11.2   0.0   0.00038      0.34       4      68 ..    1854    1911 ..    1852    1938 .. 0.76
   3 ?   -0.3   0.0       1.4   1.2e+03      11      30 ..    1976    1995 ..    1968    2015 .. 0.82

  Alignments for each domain:
  == domain 1  score: 5.3 bits;  conditional E-value: 0.025
      AAA_22   12 GesGtGKTtllrrlleqldeeakaeeerpevvfvtlpsst 51  
                  G++GtGKT +++ l ++l          ++++ ++++ + 
  KOO24889.1 1243 GPAGTGKTETVKDLSKNL---------AKQCIVFNCSDGL 1273
                  9***************99.........7777777777665 PP

  == domain 2  score: 11.2 bits;  conditional E-value: 0.00038
      AAA_22    4 tagilvvtGesGtGKTtllrrlleqldeeakaeeerpevv..fvtlpsstsskdllrellralglel 68  
                   ++++++tG +G+GKT ++ + l++ld          ++v    + +++tss  + + + + ++ ++
  KOO24889.1 1854 AERHTLITGDVGVGKTSVVFNALYSLD---------ESFVfsNLNFSAQTSSVRVSEGIESRVEKRT 1911
                  5789*********************94.........5555245555555577666777766666555 PP

  == domain 3  score: -0.3 bits;  conditional E-value: 1.4
      AAA_22   11 tGesGtGKTtllrrlleqld 30  
                  +G++G G+T+  +r l++++
  KOO24889.1 1976 MGHPGGGRTMISKRTLHKFH 1995
                  79************999986 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.2   0.0    0.0038       3.4       5      60 ..    1243    1308 ..    1242    1336 .. 0.69
   2 ?    3.0   0.0      0.16   1.4e+02       2      17 ..    1859    1874 ..    1859    1912 .. 0.77

  Alignments for each domain:
  == domain 1  score: 8.2 bits;  conditional E-value: 0.0038
      AAA_18    5 GtpGvGKttlakeLskrl.gf..gvnlrdvakenglllevdpe.......aldeskrldedkldkl 60  
                  G++G+GKt+  k Lsk l +   ++n++d +  + l  ++           +de++r++ ++l ++
  KOO24889.1 1243 GPAGTGKTETVKDLSKNLaKQciVFNCSDGLDYKSLGRTFSGLaqtgawsCFDEFNRIEVEVLSVV 1308
                  9***************98533687777776665555555554455555555566666666655555 PP

  == domain 2  score: 3.0 bits;  conditional E-value: 0.16
      AAA_18    2 lltGtpGvGKttlake 17  
                  l+tG  GvGKt++  +
  KOO24889.1 1859 LITGDVGVGKTSVVFN 1874
                  69**********9765 PP

>> AAA_24  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.4   0.0      0.13   1.1e+02      71     118 ..     647     694 ..     604     702 .. 0.84
   2 ?    4.2   0.0     0.036        32       9      37 ..    1243    1275 ..    1240    1294 .. 0.90
   3 ?    3.6   0.0     0.051        46       4      35 ..    1857    1892 ..    1854    1932 .. 0.81
   4 ?   -2.6   0.0       4.2   3.8e+03      59      89 ..    2593    2638 ..    2530    2660 .. 0.74

  Alignments for each domain:
  == domain 1  score: 2.4 bits;  conditional E-value: 0.13
      AAA_24  71 iDtideleelclaevirqnekaeskedkgdgkGygelaeefrrllkkl 118
                 +D +d++++++ ++++++++++++k    ++     +a++f++ ++kl
  KOO24889.1 647 LDLLDQVWSMMANWTKNMDQWKTGKFASMNVPEIETVAADFGKQITKL 694
                 79*******************888855444444777777777777765 PP

  == domain 2  score: 4.2 bits;  conditional E-value: 0.036
      AAA_24    9 GpsgiGKTtlakel....gpkplfidtekGlks 37  
                  Gp+g+GKT ++k l     ++ +++++ +Gl+ 
  KOO24889.1 1243 GPAGTGKTETVKDLsknlAKQCIVFNCSDGLDY 1275
                  9*************9999999999999999875 PP

  == domain 3  score: 3.6 bits;  conditional E-value: 0.051
      AAA_24    4 kiliyGpsgiGKTtlakel....gpkplfidtekGl 35  
                    li+G+ g+GKT+++ ++     ++++f +++ ++
  KOO24889.1 1857 HTLITGDVGVGKTSVVFNAlyslDESFVFSNLNFSA 1892
                  579*************99988888888887777655 PP

  == domain 4  score: -2.6 bits;  conditional E-value: 4.2
      AAA_24   59 l...............aaeladyktlviDtideleelclaevirqn 89  
                  +               ++++ad++ +v+  i+ +++ +  +v+ + 
  KOO24889.1 2593 FdkdslndqvlqkvskYTKEADFDPVVVGGISVACKSMCLWVRAME 2638
                  1555555555666666899999999999999999999999988775 PP

>> DUF1376  Protein of unknown function (DUF1376)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.0   0.0       1.2   1.1e+03      44      74 ..     532     561 ..     526     573 .. 0.75
   2 ?   10.3   0.2   0.00077      0.69      28      79 ..    1764    1815 ..    1759    1819 .. 0.95

  Alignments for each domain:
  == domain 1  score: 0.0 bits;  conditional E-value: 1.2
     DUF1376  44 kklarlagasteewraaveevleeffelsdg 74 
                  +la+lag +  ew   ++++ e +f+l+  
  KOO24889.1 532 SELAKLAGLR-TEWATYKTMLQEAGFKLQKS 561
                 579*******.99*55555555555998865 PP

  == domain 2  score: 10.3 bits;  conditional E-value: 0.00077
     DUF1376   28 LldlyyategpipdDdkklarlagasteewraaveevleeffelsdgrwvna 79  
                  L  l+++ +g  +dD +kl ++a+  +++    +++v + f++++ ++w ++
  KOO24889.1 1764 LFSLMWSMGGTVDDDSRKLIDAAMRELDAQIPLKDSVFDYFVDFKAKKWAHW 1815
                  7789**********************************************98 PP

>> FTA4  Kinetochore complex Fta4 of Sim4 subunit, or CENP-50
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   1.0   0.00073      0.66     138     198 ..    2653    2713 ..    2637    2715 .. 0.90

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.00073
        FTA4  138 elserrqqlqarlarlrklkallepflgsedpqesvqenlvtrdgeleaElermRvLlarv 198 
                  +l+++ ++l+++ a+l +++a+++++++  +  ++  +  v ++++l++E e+m vLlar 
  KOO24889.1 2653 KLQAAMKTLAKKQAQLADMEAKVKEIMDKAQVLKDKYDGGVAKKDALKSEAEQMEVLLARA 2713
                  6778888999999*************9999999999999********************95 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (3843 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1029  (0.0573931); expected 358.6 (0.02)
Passed bias filter:                      593  (0.0330749); expected 358.6 (0.02)
Passed Vit filter:                        73  (0.00407162); expected 17.9 (0.001)
Passed Fwd filter:                        32  (0.00178482); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              20  [number of targets reported over threshold]
# CPU time: 1.82u 0.33s 00:00:02.15 Elapsed: 00:00:00.53
# Mc/sec: 21803.38
//
Query:       KOO24890.1  [L=349]
Description: TPT-domain-containing protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.8e-07   30.2  18.0    3.6e-07   29.8  18.0    1.1  1  TPT             Triose-phosphate Transporter family
    1.2e-05   25.5  27.6    0.00023   21.3   9.8    2.8  2  EamA            EamA-like transporter family
    0.00018   20.9  24.3     0.0005   19.4  24.3    1.8  1  UAA             UAA transporter family
  ------ inclusion threshold ------
       0.18   11.2   0.6       0.26   10.7   0.6    1.2  1  TAF1_subA       TAF RNA Polymerase I subunit A


Domain annotation for each model (and alignments):
>> TPT  Triose-phosphate Transporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.8  18.0     8e-11   3.6e-07       9     290 .]      23     321 ..      16     321 .. 0.79

  Alignments for each domain:
  == domain 1  score: 29.8 bits;  conditional E-value: 8e-11
         TPT   9 lWYllnvvfnilnKkilnvf.....pyPltvsavqllvgsvlilvlwalglkk...rpkisse..flkailplalvktlghvlavvslskvaVSfthtv 97 
                 l   +n+  n +n  +l+       ++ ++ +++++lv  + + +l  l +k     p + ++  +   i+p++l+ +l + l + sl+  +    + +
  KOO24890.1  23 LFVGFNIGLNEFNSWALRKDswpgfHFTWFYTMFHMLVSAIAAYLLQLLVIKPklgGPTFAQAwdYKLLIIPMGLCSFLMNGLNNASLALMSLFLNQAI 121
                 4455677777777777665322333888***********9997777666666545534444444488899***************************** PP

         TPT  98 KasePiFtvilsrlllgeklsllvylsLlpivgGvalasvtElsFn.....ligfisAlisnltfslrnifsKkllkk.lkd...ldalnlfaiitils 187
                 Ka++P+ t  +s l+ ++++s l++  +  + +G +l+    +s +      +g i  li  l+ s++ ++   l ++ l d   ld++ ++ +  +++
  KOO24890.1 122 KATMPMPTMFFSYLFAKKTYSPLMIFVVFCLCVGSVLSVWYKISTDkggsqAMGVIMCLIGLLACSIKPVLVMMLTSGlLGDlpkLDTTVVLVYDCCIA 220
                 **********************99999999999999999999997633333688999999999999999987666555533466699999999999*** PP

         TPT 188 lllllPvallvegvlktpsllkstkvslkev.llllllsgvlfhlynqvaymvLervspvthsvantvKrvvvIvlsvlvfknpvsllnaiGtavaivG 285
                 ++ +l ++ ++++  +++++l+    +++ + ++ +++ +++ +  n+  +  +  ++++t +v+ +  +v+ Iv+s + ++    +++  G+a++++ 
  KOO24890.1 221 FVCMLITWACLDEREQSIAYLADP--NTRGIgIIIIICGSLMAFCFNMSNFYFIRFTTALTNTVGGSGVKVFLIVVSAVQIGV-ADPVSWSGVAIVVAS 316
                 ************966667666666..44455145566778999************************999*****99987764.355666677887777 PP

         TPT 286 vflYs 290
                  + Ys
  KOO24890.1 317 LVTYS 321
                 77765 PP

>> EamA  EamA-like transporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.3   9.8   5.2e-08   0.00023      31     136 ..      51     160 ..      36     161 .. 0.88
   2 !    9.2  10.0    0.0003       1.3       2     133 ..     174     318 ..     173     324 .. 0.79

  Alignments for each domain:
  == domain 1  score: 21.3 bits;  conditional E-value: 5.2e-08
        EamA  31 ltltfvrfliagillliiallkegkl....aklslkdwllllllgllgtvlafllffyalkktsasnaslitslePvftlilsvlllgekltlkqllgi 125
                 +++t++ +l+++i+  ++ ll  +++          d++ll++   l+++l+++l + +l  +s      i +++P+ t+++s+l+ +++ + + ++ +
  KOO24890.1  51 WFYTMFHMLVSAIAAYLLQLLVIKPKlggpTFAQAWDYKLLIIPMGLCSFLMNGLNNASLALMSLFLNQAIKATMPMPTMFFSYLFAKKTYSPLMIFVV 149
                 4678899999999998887777777767766777778999988888***************************************************** PP

        EamA 126 vlillGvllil 136
                 ++  +G +l +
  KOO24890.1 150 FCLCVGSVLSV 160
                 ******99976 PP

  == domain 2  score: 9.2 bits;  conditional E-value: 0.0003
        EamA   2 lgillallaalfwaiyfvlskillrkv.......spltltfvrfliagillliiallkegkl......aklslkdwlll.lllgllgtvlafllffyal 86 
                 +g++++l++ l  +i +vl  +l + +       ++  ++++ + ia++ +li+ ++ +++       a ++ +++ ++ ++ g l  +++++  fy +
  KOO24890.1 174 MGVIMCLIGLLACSIKPVLVMMLTSGLlgdlpklDTTVVLVYDCCIAFVCMLITWACLDEREqsiaylADPNTRGIGIIiIICGSLMAFCFNMSNFYFI 272
                 578888888888888888887774444444444477788889*******99998777777777999999**********4555557777777******* PP

        EamA  87 kktsasnaslitslePvftlilsvlllgekltlkqllgivlillGvl 133
                 + t+a + ++  s + vf ++ s++  g      ++ g+++++++++
  KOO24890.1 273 RFTTALTNTVGGSGVKVFLIVVSAVQIGV-ADPVSWSGVAIVVASLV 318
                 *************************9876.56777778777777765 PP

>> UAA  UAA transporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.4  24.3   1.1e-07    0.0005      31     301 ..      49     323 ..      43     324 .. 0.70

  Alignments for each domain:
  == domain 1  score: 19.4 bits;  conditional E-value: 1.1e-07
         UAA  31 fgnlltfvqflfvalegllesid.i....lkkrkiPlktYvilv....alffitsvlnnealkydisvPvhiifrssklipvmilGililgkrYsllqy 120
                 f ++ t++ +l+ a++++l ++  i      +  +  ++Y +l+    +  f++++lnn +l+  +s+ +   ++++  +p+m+ + l+++k+Ys l +
  KOO24890.1  49 FTWFYTMFHMLVSAIAAYLLQLLvIkpklGGPTFAQAWDYKLLIipmgLCSFLMNGLNNASLAL-MSLFLNQAIKATMPMPTMFFSYLFAKKTYSPLMI 146
                 5566666665554444444443331233355555666777654411116789************.********************************** PP

         UAA 121 lsvllltlGviiftllsakdkkedskeslnkfllGiallvlallldav.....lglvqeklykkygk.hskealfyshllslplflllqgellsavkfl 213
                  +v++l++G ++  +++ + +      +   + +G++++++ ll+ ++     + l +  l    +k ++  +l y  +++++ +l+ +  l +  + +
  KOO24890.1 147 FVVFCLCVGSVLSVWYKISTD------KGGSQAMGVIMCLIGLLACSIkpvlvMML-TSGLLGDLPKlDTTVVLVYDCCIAFVCMLITWACLDEREQSI 238
                 ***************776433......44445566666666555555322211333.334444444415557888999999999998888887766666 PP

         UAA 214 sesedvallslpsklfylllnvltqyvcikgVlilisefgaltvtlvltlRKfvslllSillFknpltlqhlvgtllVflglllysyv 301
                 +  +d         ++ +++ +l+++    + ++ i+ ++alt+t+  +  K+  +++S +  +       + g+++V+ +l+ ysy+
  KOO24890.1 239 AYLADPNT--RGIGIIIIICGSLMAFCFNMSNFYFIRFTTALTNTVGGSGVKVFLIVVSAVQIGV-ADPVSWSGVAIVVASLVTYSYL 323
                 55555552..345667777777776666667789999999******99999*999***9998764.3566789999999999999986 PP

>> TAF1_subA  TAF RNA Polymerase I subunit A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.6   5.8e-05      0.26     312     329 ..      33      51 ..       5      67 .. 0.80

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 5.8e-05
   TAF1_subA 312 e.rsWklRkdWWptrHFsk 329
                 e +sW lRkd Wp +HF+ 
  KOO24890.1  33 EfNSWALRKDSWPGFHFTW 51 
                 3369*************85 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (349 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       742  (0.0413855); expected 358.6 (0.02)
Passed bias filter:                      241  (0.0134419); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.49u 0.27s 00:00:00.76 Elapsed: 00:00:00.43
# Mc/sec: 2420.29
//
Query:       KOO24891.1  [L=571]
Description: hypothetical protein Ctob_006029 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
  ------ inclusion threshold ------
       0.23   11.9  12.9         10    6.6   0.1    3.9  3  Lar_restr_allev  Restriction alleviation protein Lar
       0.35   11.0   8.8         19    5.5   0.2    3.5  3  zf-UDP           Zinc-binding RING-finger
       0.63   10.5   6.0         17    5.9   0.2    3.1  3  zf-C4pol         C4-type zinc-finger of DNA polymerase delta
          2    8.4  11.2        7.1    6.7   0.2    3.4  3  Zn_Tnp_IS1595    Transposase zinc-ribbon domain
        3.3    7.9   7.7         14    5.9   0.2    4.1  3  SoxD             Sarcosine oxidase, delta subunit family
        4.7    7.1   4.9         16    5.4   0.2    3.0  3  zf-C2H2_9        C2H2 type zinc-finger (1 copy)


Domain annotation for each model (and alignments):
>> Lar_restr_allev  Restriction alleviation protein Lar
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6   0.1    0.0033        10       4      19 ..      50      65 ..      47      80 .. 0.82
   2 ?    3.9   2.5     0.023        69       9      59 ..     136     183 ..     111     185 .. 0.77
   3 ?    6.3   0.7    0.0043        13       4      23 ..     251     270 ..     248     275 .. 0.84

  Alignments for each domain:
  == domain 1  score: 6.6 bits;  conditional E-value: 0.0033
  Lar_restr_allev  4 kpCPfCggravlersq 19
                     +pCP+C  r+   +++
       KOO24891.1 50 QPCPHCETRPNRSQAK 65
                     7******998766665 PP

  == domain 2  score: 3.9 bits;  conditional E-value: 0.023
  Lar_restr_allev   9 CggravlersqrvvaeigqcvyCadCgastpwfkiaedeaeaekeaiea.WN 59 
                      Cgg +v +   + ++ igq  +C  C+a     +  ++ a++++ea+e  WN
       KOO24891.1 136 CGGGNVSGMGCGMWKTIGQ--MCPHCEA--RPNRMQAQAAQDRQEAVELgWN 183
                      7777777777777777765..6878888..4445566677777777765466 PP

  == domain 3  score: 6.3 bits;  conditional E-value: 0.0043
  Lar_restr_allev   4 kpCPfCggravlersqrvva 23 
                      +pCP+C  r+  e++++ +a
       KOO24891.1 251 QPCPWCETRPNREQAKLAQA 270
                      7********99998887765 PP

>> zf-UDP  Zinc-binding RING-finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.5   0.2    0.0062        19      49      64 ..      49      63 ..      43      71 .. 0.83
   2 ?    5.5   0.1    0.0062        19      50      67 ..     153     170 ..     147     178 .. 0.77
   3 ?    3.3   0.8      0.03        90      48      64 ..     249     264 ..     241     276 .. 0.81

  Alignments for each domain:
  == domain 1  score: 5.5 bits;  conditional E-value: 0.0062
      zf-UDP 49 gnqsCPqCktrykrlk 64
                g q CP+C+tr +r +
  KOO24891.1 49 G-QPCPHCETRPNRSQ 63
                4.99*******99965 PP

  == domain 2  score: 5.5 bits;  conditional E-value: 0.0062
      zf-UDP  50 nqsCPqCktrykrlkgsp 67 
                  q+CP+C++r +r++  +
  KOO24891.1 153 GQMCPHCEARPNRMQAQA 170
                 49********99977554 PP

  == domain 3  score: 3.3 bits;  conditional E-value: 0.03
      zf-UDP  48 dgnqsCPqCktrykrlk 64 
                  g q CP C+tr +r +
  KOO24891.1 249 KG-QPCPWCETRPNREQ 264
                 45.99*******99965 PP

>> zf-C4pol  C4-type zinc-finger of DNA polymerase delta
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.8   0.0    0.0063        19       3      37 ..      41      76 ..      36      80 .. 0.76
   2 ?    5.9   0.2    0.0058        17       3      35 ..     145     179 ..     136     196 .. 0.70
   3 ?   -0.5   0.3       0.6   1.8e+03       3      29 ..     242     269 ..     240     274 .. 0.70

  Alignments for each domain:
  == domain 1  score: 5.8 bits;  conditional E-value: 0.0063
    zf-C4pol  3 vCk.eklkkalCkkCrsdkqesllkllsrlkelekk 37
                +C+  k+k + C +C++++++s +kl + ++++ ++
  KOO24891.1 41 GCGlWKTKGQPCPHCETRPNRSQAKLAQAMHRVSDR 76
                57753566889*****99999988888877776554 PP

  == domain 2  score: 5.9 bits;  conditional E-value: 0.0058
    zf-C4pol   3 vCk.eklkkalCkkCrsdkqes.llkllsrlkele 35 
                 +C+  k+  ++C +C++++++  +++ ++r++++e
  KOO24891.1 145 GCGmWKTIGQMCPHCEARPNRMqAQAAQDRQEAVE 179
                 5774234489*****87776665666666665555 PP

  == domain 3  score: -0.5 bits;  conditional E-value: 0.6
    zf-C4pol   3 vCk.eklkkalCkkCrsdkqesllklls 29 
                 +C+  k+k + C  C+++++++ +kl +
  KOO24891.1 242 GCGmWKTKGQPCPWCETRPNREQAKLAQ 269
                 5774346678899999888887666554 PP

>> Zn_Tnp_IS1595  Transposase zinc-ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.7   0.2    0.0024       7.1      15      27 ..      45      58 ..      44      70 .. 0.74
   2 ?    6.0   0.1    0.0039        12      18      31 ..     153     165 ..     148     175 .. 0.66
   3 ?    0.1   1.9      0.27   7.9e+02      15      27 ..     246     259 ..     245     274 .. 0.74

  Alignments for each domain:
  == domain 1  score: 6.7 bits;  conditional E-value: 0.0024
  Zn_Tnp_IS1595 15 Wpng.fvCPhCgsr 27
                   W+++ + CPhC+ r
     KOO24891.1 45 WKTKgQPCPHCETR 58
                   8888444****966 PP

  == domain 2  score: 6.0 bits;  conditional E-value: 0.0039
  Zn_Tnp_IS1595  18 gfvCPhCgsrkayr 31 
                    g+ CPhC+  ++ r
     KOO24891.1 153 GQMCPHCEA-RPNR 165
                    478****94.4444 PP

  == domain 3  score: 0.1 bits;  conditional E-value: 0.27
  Zn_Tnp_IS1595  15 Wpng.fvCPhCgsr 27 
                    W+++ + CP C+ r
     KOO24891.1 246 WKTKgQPCPWCETR 259
                    8888444****976 PP

>> SoxD  Sarcosine oxidase, delta subunit family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.2   0.4     0.066     2e+02       4      17 ..      52      65 ..      50     126 .. 0.60
   2 ?   -0.1   0.1      0.33     1e+03       4      13 ..     156     165 ..     155     179 .. 0.81
   3 ?    5.9   0.2    0.0046        14       3      25 ..     252     274 ..     251     280 .. 0.85

  Alignments for each domain:
  == domain 1  score: 2.2 bits;  conditional E-value: 0.066
        SoxD  4 CPlcgerdesEFay 17
                CP+c++r+++  a 
  KOO24891.1 52 CPHCETRPNRSQAK 65
                66666666543333 PP

  == domain 2  score: -0.1 bits;  conditional E-value: 0.33
        SoxD   4 CPlcgerdes 13 
                 CP+c++r+++
  KOO24891.1 156 CPHCEARPNR 165
                 *****99875 PP

  == domain 3  score: 5.9 bits;  conditional E-value: 0.0046
        SoxD   3 tCPlcgerdesEFaygGeakiar 25 
                 +CP+c++r+++E a   +a+  r
  KOO24891.1 252 PCPWCETRPNREQAKLAQATCPR 274
                 6***********99888888766 PP

>> zf-C2H2_9  C2H2 type zinc-finger (1 copy)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.4   0.2    0.0053        16       4      30 ..      52      79 ..      50      80 .. 0.92
   2 ?    1.8   0.1     0.075   2.2e+02       3      15 ..     155     167 ..     153     172 .. 0.81
   3 ?   -0.4   0.1      0.34     1e+03       4      17 ..     253     267 ..     251     270 .. 0.76

  Alignments for each domain:
  == domain 1  score: 5.4 bits;  conditional E-value: 0.0053
                -TTT--B-S.SHHHHHHHHHHHTSSS-- CS
   zf-C2H2_9  4 CPvCevkfn.swkdlseHilsaasksda 30
                CP Ce + n s ++l++ +     ++d+
  KOO24891.1 52 CPHCETRPNrSQAKLAQAMHRVSDRNDK 79
                *********99********999999986 PP

  == domain 2  score: 1.8 bits;  conditional E-value: 0.075
                 B-TTT--B-SSHH CS
   zf-C2H2_9   3 lCPvCevkfnswk 15 
                 +CP Ce + n ++
  KOO24891.1 155 MCPHCEARPNRMQ 167
                 7*****9998776 PP

  == domain 3  score: -0.4 bits;  conditional E-value: 0.34
                 -TTT--B-S.SHHHH CS
   zf-C2H2_9   4 CPvCevkfn.swkdl 17 
                 CP Ce + n + ++l
  KOO24891.1 253 CPWCETRPNrEQAKL 267
                 *****9988655555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (571 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       412  (0.0229795); expected 358.6 (0.02)
Passed bias filter:                      226  (0.0126053); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.51u 0.27s 00:00:00.78 Elapsed: 00:00:00.44
# Mc/sec: 3872.59
//
Query:       KOO24892.1  [L=355]
Description: hypothetical protein Ctob_006026 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.6e-14   53.8   0.2    3.3e-14   52.8   0.2    1.5  1  Myb_DNA-binding  Myb-like DNA-binding domain
      3e-07   30.6   0.3    5.3e-07   29.8   0.3    1.4  1  Myb_DNA-bind_6   Myb-like DNA-binding domain
     0.0019   18.0   0.0     0.0033   17.3   0.0    1.3  1  Myb_DNA-bind_7   Myb DNA-binding like
  ------ inclusion threshold ------
       0.14   12.1   1.1       0.27   11.2   1.1    1.4  1  Zn_ribbon_SprT   SprT-like zinc ribbon domain


Domain annotation for each model (and alignments):
>> Myb_DNA-binding  Myb-like DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.8   0.2   7.5e-18   3.3e-14       2      45 ..     155     198 ..     155     199 .. 0.96

  Alignments for each domain:
  == domain 1  score: 52.8 bits;  conditional E-value: 7.5e-18
                      SSSBHHHHHHHHHHHHHHTTCHHHHHHHHTSS-HHHHHHHHHHH CS
  Myb_DNA-binding   2 gkWteeEdelLleavkkhGnrWkkIaerlggRtekqcrsrwrny 45 
                      ++Wt+ Ed+++l++v++ G rW++Ia+ l+gR+++++r+rw+++
       KOO24892.1 155 NPWTPSEDNRILRGVRENGCRWSLIAHTLPGRSDNAVRNRWHRL 198
                      58***************************************975 PP

>> Myb_DNA-bind_6  Myb-like DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.8   0.3   1.2e-10   5.3e-07       1      44 [.     157     199 ..     157     211 .. 0.89

  Alignments for each domain:
  == domain 1  score: 29.8 bits;  conditional E-value: 1.2e-10
  Myb_DNA-bind_6   1 WteeEdeiLlklvekygndWknIaealnrRtpkqcfdrwknkLr 44 
                     Wt+ Ed ++l++v+++g  W++Ia  l+ R+ +++++rw++ L 
      KOO24892.1 157 WTPSEDNRILRGVRENGCRWSLIAHTLPGRSDNAVRNRWHR-LE 199
                     ***************************55************.73 PP

>> Myb_DNA-bind_7  Myb DNA-binding like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   0.0   7.4e-07    0.0033       7      59 ..     153     205 ..     149     215 .. 0.91

  Alignments for each domain:
  == domain 1  score: 17.3 bits;  conditional E-value: 7.4e-07
  Myb_DNA-bind_7   7 ktkkWskeetekFYkaLsqfGtDFsliaklfpkrtrrqlKlKFkkEerknpel 59 
                     + ++W+ +e ++  +++++ G  +slia+ +p+r+++ +++++++ er ++++
      KOO24892.1 153 QVNPWTPSEDNRILRGVRENGCRWSLIAHTLPGRSDNAVRNRWHRLERAERAR 205
                     5689*****************************************99988765 PP

>> Zn_ribbon_SprT  SprT-like zinc ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   1.1   5.9e-05      0.27      19      32 ..     203     225 ..     193     229 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 5.9e-05
  Zn_ribbon_SprT  19 sirrhn.........YrCrrCkg 32 
                     + rr++         YrCr+C++
      KOO24892.1 203 RARREAheegraiegYRCRKCGQ 225
                     5677779999999********98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (355 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       454  (0.0253221); expected 358.6 (0.02)
Passed bias filter:                      304  (0.0169558); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.43u 0.23s 00:00:00.66 Elapsed: 00:00:00.39
# Mc/sec: 2726.76
//
Query:       KOO24893.1  [L=439]
Description: hypothetical protein Ctob_006027 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (439 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2047  (0.114173); expected 358.6 (0.02)
Passed bias filter:                      428  (0.0238719); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.68u 0.25s 00:00:00.93 Elapsed: 00:00:00.41
# Mc/sec: 3211.64
//
Query:       KOO24894.1  [L=245]
Description: 30s ribosomal protein s2 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    5.5e-37  127.1   0.0    6.6e-37  126.8   0.0    1.1  1  Ribosomal_S2  Ribosomal protein S2


Domain annotation for each model (and alignments):
>> Ribosomal_S2  Ribosomal protein S2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  126.8   0.0   3.7e-41   6.6e-37       5     215 .]      19     217 ..      15     217 .. 0.91

  Alignments for each domain:
  == domain 1  score: 126.8 bits;  conditional E-value: 3.7e-41
  Ribosomal_S2   5 gvhfGhqtrrwnpkmkpyIygerngihiidlektlaalrraykvvkevaakggkilfvgtkkqakeavkeaakrangyyvnerWlgGtLTNfktikk 101
                   + ++G + +r++ + ++y+ g+  g  ii+ e+tl a+rr+++++k+v+ +gg+ lfv+t+   +++ +   ++++++y+ +rW++G+LTN+k+ ++
    KOO24894.1  19 NSFLGFSSARTHTNAYNYLLGTAGGQAIINPEETLVAIRRVLHILKKVTFRGGRTLFVSTQPTLARLCRVVGEQSGQFYLAKRWVPGLLTNWKKSRE 115
                   56899999***************************************************************************************** PP

  Ribosomal_S2 102 sikklkeleeleedgeldltkkealklkkekekleknlggikkmkklPdlvvvldpkkekiavkEakklgipviaivDtnvdpdlvdypIpaNddsi 198
                   +i+k  + + l       ++   a klk +  +  ++++g+++m++ Pdl+v ld++    +  E +++++p+i++vD+++  d+vdypIpaN++s+
    KOO24894.1 116 HIHKKLRPDPL-------MQA--AGKLKYSDLQKANYYRGVEHMTRPPDLIVRLDVTP---LYGEPQRVNVPLISVVDSDTPSDDVDYPIPANTKSL 200
                   *9884333333.......223..33455555555799******************975...789********************************* PP

  Ribosomal_S2 199 rsiklilgvladaieeg 215
                   r  + ++++l +a++eg
    KOO24894.1 201 RFYHTLAHLLVRACNEG 217
                   **************997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (245 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       346  (0.0192983); expected 358.6 (0.02)
Passed bias filter:                      341  (0.0190195); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.25s 00:00:00.65 Elapsed: 00:00:00.40
# Mc/sec: 1855.05
//
Query:       KOO24895.1  [L=1435]
Description: hypothetical protein Ctob_006025 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.038   14.3   2.7        2.4    8.5   1.3    3.2  2  PET117    PET assembly of cytochrome c oxidase, mitochondrial


Domain annotation for each model (and alignments):
>> PET117  PET assembly of cytochrome c oxidase, mitochondrial
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.1   0.0    0.0066   1.2e+02       8      37 ..     432     461 ..     430     462 .. 0.93
   2 ?    8.5   1.3   0.00013       2.4      25      67 ..     619     663 ..     600     665 .. 0.85

  Alignments for each domain:
  == domain 1  score: 3.1 bits;  conditional E-value: 0.0066
      PET117   8 lsvlltaatvvgVHylQrlerealrqGvir 37 
                 +s+++ta  v   H  + +e e+lr G +r
  KOO24895.1 432 SSMAATAFAVGAQHAEDAAEDEQLRGGLVR 461
                 5899*********************99876 PP

  == domain 2  score: 8.5 bits;  conditional E-value: 0.00013
      PET117  25 rlerealrqGvirDaerqaeK..erkrkenkaeleeqkelrkkye 67 
                 r  r++l++ ++ D e   ++  ++ r+ +++++e q+++++ y+
  KOO24895.1 619 RFMRDQLHEAPVADGEAELARqdAARRRRRQQQFELQRQKEQVYR 663
                 55699*********988877777777889999******9999997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1435 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       803  (0.0447878); expected 358.6 (0.02)
Passed bias filter:                      443  (0.0247086); expected 358.6 (0.02)
Passed Vit filter:                        56  (0.00312343); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.86u 0.26s 00:00:01.12 Elapsed: 00:00:00.41
# Mc/sec: 10431.41
//
Query:       KOO24896.1  [L=102]
Description: hypothetical protein Ctob_006022 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.093   12.4   0.1       0.26   11.0   0.1    1.8  1  Dpy-30    Dpy-30 motif


Domain annotation for each model (and alignments):
>> Dpy-30  Dpy-30 motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.1   1.5e-05      0.26      27      42 .]      50      65 ..      50      65 .. 0.91

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 1.5e-05
                SSHHHHHHHHHHHHGG CS
      Dpy-30 27 eDPieyLAeYLlknkn 42
                +DP  +LA++L +n++
  KOO24896.1 50 QDPNIFLAQWLKRNNP 65
                59*********99985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (102 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       477  (0.0266049); expected 358.6 (0.02)
Passed bias filter:                      458  (0.0255452); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.24s 00:00:00.62 Elapsed: 00:00:00.40
# Mc/sec: 772.06
//
Query:       KOO24897.1  [L=559]
Description: putative s-acyltransferase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.5e-45  153.0   6.5    2.1e-13   50.5   0.0    6.0  7  Ank_4     Ankyrin repeats (many copies)
    9.7e-32  109.4   1.0    6.9e-09   36.2   0.0    4.4  4  Ank_2     Ankyrin repeats (3 copies)
    1.5e-24   83.3   0.2     0.0011   19.3   0.0    7.7  7  Ank_3     Ankyrin repeat
    1.4e-23   82.2   1.0    0.00027   21.2   0.0    5.9  5  Ank       Ankyrin repeat
    1.7e-22   79.2   2.2    1.2e-05   25.5   0.3    7.2  6  Ank_5     Ankyrin repeats (many copies)
    5.1e-22   78.4  11.0    1.9e-21   76.6  11.0    1.9  1  DHHC      DHHC palmitoyltransferase


Domain annotation for each model (and alignments):
>> Ank_4  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.6   0.1   2.5e-10   7.5e-07       4      55 .]      19      71 ..      18      71 .. 0.93
   2 !   50.5   0.0     7e-17   2.1e-13       3      55 .]      53     105 ..      51     105 .. 0.97
   3 !   33.2   0.0   1.8e-11   5.3e-08       1      48 [.      85     131 ..      85     138 .. 0.90
   4 !   32.1   0.1   3.9e-11   1.2e-07       2      54 ..     119     170 ..     118     170 .. 0.94
   5 !   38.7   0.1   3.6e-13   1.1e-09       3      55 .]     153     204 ..     151     204 .. 0.97
   6 ?   -1.7   0.0       1.6   4.8e+03       3      21 ..     224     242 ..     215     248 .. 0.57
   7 ?   -3.7   0.0         6   1.8e+04      41      50 ..     444     453 ..     443     454 .. 0.84

  Alignments for each domain:
  == domain 1  score: 29.6 bits;  conditional E-value: 2.5e-10
       Ank_4  4 aLhyaaisgrlelvrlLlekgad.inaqdnrsGetalhiAakrgnveilklLl 55
                +L  a++ g++ +++ L+++ +d ++a+d ++G ta h Aa++gn e+l+lLl
  KOO24897.1 19 LLCEAIKRGNTTAAKALIAQFPDvLHAVDTADGATAAHWAALFGNTEVLELLL 71
                68889******************6666699**********************8 PP

  == domain 2  score: 50.5 bits;  conditional E-value: 7e-17
       Ank_4   3 taLhyaaisgrlelvrlLlekgadinaqdnrsGetalhiAakrgnveilklLl 55 
                 ta h+aa +g++e+++lLl+ ga++na++++sG+ ++h A  rg+v+++k+Ll
  KOO24897.1  53 TAAHWAALFGNTEVLELLLSEGASVNARIDSSGMQPIHWASTRGHVDVVKMLL 105
                 899*************************************************8 PP

  == domain 3  score: 33.2 bits;  conditional E-value: 1.8e-11
       Ank_4   1 eltaLhyaaisgrlelvrlLlekgadinaqdnrsGetalhiAakrgnv 48 
                 +++++h+a   g++++v+ Ll+k  din++ ++ + t+l iAa+  + 
  KOO24897.1  85 GMQPIHWASTRGHVDVVKMLLSKSSDINEV-DIKQTTPLVIAAQYDHT 131
                 589***************************.************87765 PP

  == domain 4  score: 32.1 bits;  conditional E-value: 3.9e-11
       Ank_4   2 ltaLhyaaisgrlelvrlLlekgadinaqdnrsGetalhiAakrgnveilklL 54 
                 +t+L  aa++ ++ lv +L+ +gadi +  ++++++alh Aa++gn++ + lL
  KOO24897.1 119 TTPLVIAAQYDHTVLVFYLVKHGADISRL-DDCQDSALHWAAYKGNLQTAALL 170
                 799*************************9.****************9987765 PP

  == domain 5  score: 38.7 bits;  conditional E-value: 3.6e-13
       Ank_4   3 taLhyaaisgrlelvrlLlekgadinaqdnrsGetalhiAakrgnveilklLl 55 
                 +aLh+aa++g+l++++lL++ g   +a  + +G t++h Aa r+ ++++++L+
  KOO24897.1 153 SALHWAAYKGNLQTAALLHYLGLPADAA-DTYGSTPMHLAAARNAPQVIEYLI 204
                 79*************************7.***********************8 PP

  == domain 6  score: -1.7 bits;  conditional E-value: 1.6
       Ank_4   3 taLhyaaisgrlelvrlLl 21 
                 t++  a + g++ + rlLl
  KOO24897.1 224 TPFEVAKERGNTMAMRLLL 242
                 3333333455666666665 PP

  == domain 7  score: -3.7 bits;  conditional E-value: 6
       Ank_4  41 iAakrgnvei 50 
                 +A++++n++i
  KOO24897.1 444 MALMMNNYHI 453
                 6999999986 PP

>> Ank_2  Ankyrin repeats (3 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.7   0.1   5.7e-11   1.7e-07      28      82 ..      18      80 ..       6      81 .. 0.86
   2 !   36.2   0.0   2.3e-12   6.9e-09      25      81 ..      84     146 ..      79     148 .. 0.88
   3 !   29.2   0.1   3.6e-10   1.1e-06      27      76 ..     152     208 ..     147     215 .. 0.80
   4 !    8.1   0.0    0.0013       3.9      13      54 ..     211     262 ..     206     267 .. 0.65

  Alignments for each domain:
  == domain 1  score: 31.7 bits;  conditional E-value: 5.7e-11
       Ank_2 28 taLhyAakngnleivklLleh.......ad.ndgrtpLhyAarsghleivklLlekgadinlk 82
                  L  A+k+gn+ ++k+L+++       +d  dg t+ h+Aa +g++e+++lLl  ga++n++
  KOO24897.1 18 DLLCEAIKRGNTTAAKALIAQfpdvlhaVDtADGATAAHWAALFGNTEVLELLLSEGASVNAR 80
                67889**************96666666766899*********************88****986 PP

  == domain 2  score: 36.2 bits;  conditional E-value: 2.3e-12
       Ank_2  25 ngktaLhyAakngnleivklLleh......adndgrtpLhyAarsghleivklLlekgadinl 81 
                  g+ ++h+A  +g++++vk+Ll++      +d + +tpL +Aa+++h+ +v +L+++gadi +
  KOO24897.1  84 SGMQPIHWASTRGHVDVVKMLLSKssdineVDIKQTTPLVIAAQYDHTVLVFYLVKHGADISR 146
                 6899******************97767656668899*******************99***976 PP

  == domain 3  score: 29.2 bits;  conditional E-value: 3.6e-10
       Ank_2  27 ktaLhyAakngnleivklLleh.......adndgrtpLhyAarsghleivklLl.ekg 76 
                  +aLh+Aa +gnl+++ lL  +       ad +g tp+h+Aa  + ++++++L+ e+ 
  KOO24897.1 152 DSALHWAAYKGNLQTAALLH-YlglpadaADTYGSTPMHLAAARNAPQVIEYLIdEST 208
                 69*********999766666.456775677799*********99**********4444 PP

  == domain 4  score: 8.1 bits;  conditional E-value: 0.0013
       Ank_2  13 vklLlegadpnkngktaLhyAakngnleivklLleh............adndgr 54 
                 v+ L+  +d+  +g+t+  +A ++gn+ +++lLl++            + ndg 
  KOO24897.1 211 VEKLVTMKDA--KGRTPFEVAKERGNTMAMRLLLKAnptffvrvhqalMGNDGS 262
                 6666644555..59***********99999****84454554433332225665 PP

>> Ank_3  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.0   0.0     0.072   2.1e+02       8      29 ..      22      42 ..      17      44 .. 0.86
   2 !   19.3   0.0   3.6e-07    0.0011       1      31 []      50      79 ..      50      79 .. 0.95
   3 !   14.7   0.0   1.1e-05     0.034       2      30 ..      85     112 ..      84     113 .. 0.93
   4 !   11.9   0.0   8.8e-05      0.26       4      30 ..     120     145 ..     119     146 .. 0.95
   5 !    6.7   0.1    0.0045        13       2      21 ..     151     169 ..     150     179 .. 0.71
   6 !   15.7   0.0   5.1e-06     0.015       1      23 [.     183     205 ..     183     210 .. 0.94
   7 ?    1.0   0.0      0.31   9.3e+02       2      23 ..     222     243 ..     221     248 .. 0.83

  Alignments for each domain:
  == domain 1  score: 3.0 bits;  conditional E-value: 0.072
       Ank_3  8 lAarsgnleivkfLlenkgadv 29
                +A++ gn++ +k+L+    +dv
  KOO24897.1 22 EAIKRGNTTAAKALIA-QFPDV 42
                7999************.88887 PP

  == domain 2  score: 19.3 bits;  conditional E-value: 3.6e-07
       Ank_3  1 nGetpLhlAarsgnleivkfLlenkgadvna 31
                +G t+ h+Aa++gn+e++++Ll   ga vna
  KOO24897.1 50 DGATAAHWAALFGNTEVLELLLS-EGASVNA 79
                699********************.8***996 PP

  == domain 3  score: 14.7 bits;  conditional E-value: 1.1e-05
       Ank_3   2 GetpLhlAarsgnleivkfLlenkgadvn 30 
                 G+ p+h+A   g++++vk+Ll  k  d+n
  KOO24897.1  85 GMQPIHWASTRGHVDVVKMLLS-KSSDIN 112
                 6779******************.999999 PP

  == domain 4  score: 11.9 bits;  conditional E-value: 8.8e-05
       Ank_3   4 tpLhlAarsgnleivkfLlenkgadvn 30 
                 tpL +Aa ++++ +v +L++ +gad+ 
  KOO24897.1 120 TPLVIAAQYDHTVLVFYLVK-HGADIS 145
                 9*******************.9***95 PP

  == domain 5  score: 6.7 bits;  conditional E-value: 0.0045
       Ank_3   2 GetpLhlAarsgnleivkfL 21 
                 + ++Lh+Aa  gnl    +L
  KOO24897.1 151 QDSALHWAAYKGNLQ-TAAL 169
                 579**********96.2222 PP

  == domain 6  score: 15.7 bits;  conditional E-value: 5.1e-06
       Ank_3   1 nGetpLhlAarsgnleivkfLle 23 
                 +G tp+hlAa  + + ++++L++
  KOO24897.1 183 YGSTPMHLAAARNAPQVIEYLID 205
                 699*******************8 PP

  == domain 7  score: 1.0 bits;  conditional E-value: 0.31
       Ank_3   2 GetpLhlAarsgnleivkfLle 23 
                 G+tp+ +A + gn+  +++Ll+
  KOO24897.1 222 GRTPFEVAKERGNTMAMRLLLK 243
                 8999999999999988999998 PP

>> Ank  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.2   0.0   9.1e-08   0.00027       1      30 [.      50      80 ..      50      82 .. 0.94
   2 !   20.6   0.0   1.5e-07   0.00044       2      31 ..      85     115 ..      84     116 .. 0.89
   3 !   11.5   0.0   0.00011      0.32       4      31 ..     120     148 ..     118     149 .. 0.93
   4 !    8.0   0.2    0.0014       4.1       3      24 ..     152     174 ..     150     182 .. 0.74
   5 !   14.0   0.0   1.7e-05     0.051       1      23 [.     183     205 ..     183     217 .. 0.85

  Alignments for each domain:
  == domain 1  score: 21.2 bits;  conditional E-value: 9.1e-08
                TSBBHHHHHHHHTTHHHHHHHH.TTTSTTCB CS
         Ank  1 dGnTPLHlAatngkkriiklLL.hGAnlnal 30
                dG T+ H+Aa +g++++++lLL  GA++na+
  KOO24897.1 50 DGATAAHWAALFGNTEVLELLLsEGASVNAR 80
                899*******************77*****97 PP

  == domain 2  score: 20.6 bits;  conditional E-value: 1.5e-07
                 SBBHHHHHHHHTTHHHHHHHH.TTTSTTCBT CS
         Ank   2 GnTPLHlAatngkkriiklLL.hGAnlnald 31 
                 G+ P H+A+t+g+++++k+LL +++++n +d
  KOO24897.1  85 GMQPIHWASTRGHVDVVKMLLsKSSDINEVD 115
                 6779*****************7688***988 PP

  == domain 3  score: 11.5 bits;  conditional E-value: 0.00011
                 BHHHHHHHHTTHHHHHHHH.TTTSTTCBT CS
         Ank   4 TPLHlAatngkkriiklLL.hGAnlnald 31 
                 TPL +Aa+++++  + +L+ hGA++  ld
  KOO24897.1 120 TPLVIAAQYDHTVLVFYLVkHGADISRLD 148
                 9***********************99887 PP

  == domain 4  score: 8.0 bits;  conditional E-value: 0.0014
                 BBHHHHHHHHTTHHHHHHH..HTT CS
         Ank   3 nTPLHlAatngkkriiklL..LhG 24 
                 +++LH+Aa+ g+++ + lL  L G
  KOO24897.1 152 DSALHWAAYKGNLQTAALLhyL-G 174
                 68******99999999865332.5 PP

  == domain 5  score: 14.0 bits;  conditional E-value: 1.7e-05
                 TSBBHHHHHHHHTTHHHHHHHHT CS
         Ank   1 dGnTPLHlAatngkkriiklLLh 23 
                 +G TP HlAa ++ +++i++L++
  KOO24897.1 183 YGSTPMHLAAARNAPQVIEYLID 205
                 699*******8899*******93 PP

>> Ank_5  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.4   0.0      0.31   9.1e+02      20      36 ..      20      36 ..      10      49 .. 0.86
   2 !   13.3   0.1   2.6e-05     0.079      15      44 ..      50      79 ..      35      80 .. 0.85
   3 !   21.6   0.0   6.5e-08   0.00019       1      45 [.      70     119 ..      70     120 .. 0.82
   4 !   12.6   0.0   4.4e-05      0.13       8      46 ..     110     148 ..     106     150 .. 0.86
   5 !   25.5   0.3   4.1e-09   1.2e-05       1      56 []     137     191 ..     137     191 .. 0.96
   6 !   19.2   0.0   3.8e-07    0.0011       9      56 .]     177     229 ..     169     229 .. 0.77

  Alignments for each domain:
  == domain 1  score: 0.4 bits;  conditional E-value: 0.31
       Ank_5 20 LhvAakygaadvvrlLl 36
                L+ A+k+g+ + ++ L+
  KOO24897.1 20 LCEAIKRGNTTAAKALI 36
                5669**********999 PP

  == domain 2  score: 13.3 bits;  conditional E-value: 2.6e-05
       Ank_5 15 ggntpLhvAakygaadvvrlLlargadlnl 44
                +g t+ h+Aa  g+ +v++lLl +ga+ n+
  KOO24897.1 50 DGATAAHWAALFGNTEVLELLLSEGASVNA 79
                466*******************88888886 PP

  == domain 3  score: 21.6 bits;  conditional E-value: 6.5e-08
       Ank_5   1 Llehg.padvnrldgggntpLhvAakygaadvvrlLl.....argadlnlt 45 
                 Ll++g +++  r d  g+ p+h+A+ +g+ dvv++Ll      +++d+++t
  KOO24897.1  70 LLSEGaSVNA-RIDSSGMQPIHWASTRGHVDVVKMLLskssdINEVDIKQT 119
                 7888877777.7899**********************66666666666655 PP

  == domain 4  score: 12.6 bits;  conditional E-value: 4.4e-05
       Ank_5   8 dvnrldgggntpLhvAakygaadvvrlLlargadlnltd 46 
                 d+n  d + +tpL +Aa y +  +v +L+++gad+   d
  KOO24897.1 110 DINEVDIKQTTPLVIAAQYDHTVLVFYLVKHGADISRLD 148
                 5666777889************************97666 PP

  == domain 5  score: 25.5 bits;  conditional E-value: 4.1e-09
       Ank_5   1 LlehgpadvnrldgggntpLhvAakygaadvvrlLlargadlnltdsrGltaldlA 56 
                 L++hg ad+ rld +  ++Lh+Aa++g+++ + lL+  g+ +++ d +G+t+++lA
  KOO24897.1 137 LVKHG-ADISRLDDCQDSALHWAAYKGNLQTAALLHYLGLPADAADTYGSTPMHLA 191
                 899**.*******************999999999999*****************98 PP

  == domain 6  score: 19.2 bits;  conditional E-value: 3.8e-07
       Ank_5   9 vnrldgggntpLhvAakygaadvvrlLl.....argadlnltdsrGltaldlA 56 
                  ++ d +g tp+h+Aa ++a++v+++L+       +   +++d+ G+t++++A
  KOO24897.1 177 ADAADTYGSTPMHLAAARNAPQVIEYLIdestsSVEKLVTMKDAKGRTPFEVA 229
                 456688999*******************7554433445788888888888887 PP

>> DHHC  DHHC palmitoyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   76.6  11.0   6.3e-25   1.9e-21       7     133 ..     355     468 ..     350     469 .. 0.89

  Alignments for each domain:
  == domain 1  score: 76.6 bits;  conditional E-value: 6.3e-25
        DHHC   7 fCstcniykpprskHcrvCnrcvlrfDHhCpwlnnciGerNykyFllfllylllllilalvlllialvklveeekkseflavtllkkllsilllvlsll 105
                  C tc+i+kp rskHc+v +rcv+ fDH+Cp++nn iG  Ny  F++f+++ ++ +  ++ +++++l +  +++                 +++v  ++
  KOO24897.1 355 LCHTCRIVKPLRSKHCHVRKRCVPMFDHYCPYINNTIGGGNYWEFCVFIFVGMFGVGTTFAAAVQYLMVVNSKDPLV-------------WFVAVDFFF 440
                 6*******************************************************999999999998876666552.............466666778 PP

        DHHC 106 fllllgllllfhlylilrnlTtieamkk 133
                 ++l+ +++  +h+ l+lrnlTt+e m+k
  KOO24897.1 441 ATLMALMMNNYHISLTLRNLTTNEDMNK 468
                 88888888889***************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (559 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       570  (0.0317921); expected 358.6 (0.02)
Passed bias filter:                      376  (0.0209716); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.57u 0.26s 00:00:00.83 Elapsed: 00:00:00.42
# Mc/sec: 4004.93
//
Query:       KOO24898.1  [L=410]
Description: hypothetical protein Ctob_006031 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0029   17.6   0.0       0.12   12.4   0.0    2.4  2  PPR_3      Pentatricopeptide repeat domain
  ------ inclusion threshold ------
      0.071   13.3   0.8        1.4    9.1   0.0    2.6  2  Nterm_IS4  Insertion element 4 transposase N-terminal
       0.14   12.4   0.0         17    5.7   0.0    2.4  2  PPR_2      PPR repeat family


Domain annotation for each model (and alignments):
>> PPR_3  Pentatricopeptide repeat domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.3   0.0    0.0035        21      32      51 ..      91     110 ..      87     119 .. 0.86
   2 !   12.4   0.0     2e-05      0.12       2      60 ..      96     156 ..      96     159 .. 0.80

  Alignments for each domain:
  == domain 1  score: 5.3 bits;  conditional E-value: 0.0035
       PPR_3  32 klalevlermkkkgikPtvv 51 
                 +++l +lerm+ ++++P+  
  KOO24898.1  91 ERVLGILERMRADRVAPSSY 110
                 67889************965 PP

  == domain 2  score: 12.4 bits;  conditional E-value: 2e-05
       PPR_3   2 ilremerkgikldvvtYthLLtayanagnkk..lalevlermkkkgikPtvvtyNailgvi 60 
                 il+ m ++ + ++ +t  h   a+ +    +   +l++l++    g +P++ ++ a+++++
  KOO24898.1  96 ILERMRADRVAPSSYTLQHVFAAARREPSNEpaQLLKILQEQMRAGMRPNRASFDALIEAC 156
                 677888888888888888888887776544311678999999999**************99 PP

>> Nterm_IS4  Insertion element 4 transposase N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.1   0.0   0.00024       1.4       5      51 ..      35      81 ..      31     131 .. 0.77
   2 ?    2.1   0.1     0.039   2.3e+02      47      87 ..     198     237 ..     186     242 .. 0.80

  Alignments for each domain:
  == domain 1  score: 9.1 bits;  conditional E-value: 0.00024
   Nterm_IS4  5 gvLtrvlppelvdevlaetgtaevRkrkLPaevvvylvlalaLfrde 51
                  L ++   +l+ evl+++ t e+  r+LP ++ vy   a +L rd 
  KOO24898.1 35 RALGSAGHISLIPEVLNRAATHELGGRALPGRQRVYNEAARMLARDT 81
                5666677789**************************99999999886 PP

  == domain 2  score: 2.1 bits;  conditional E-value: 0.039
   Nterm_IS4  47 LfrdesyeevvrrLtagleeeaewelpaksaitqaRkrLGa 87 
                 L    s  +vv+ L a l+ +   +++   a++ aR+r+ a
  KOO24898.1 198 LVHTPSALTVVEPLVAKLPFAP-QRALRDDALVAARARVHA 237
                 5566677789999999999984.69999**********865 PP

>> PPR_2  PPR repeat family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.7   0.0    0.0029        17      17      42 ..      88     113 ..      86     120 .. 0.88
   2 ?    4.2   0.0    0.0085        51      24      49 ..     132     157 ..     124     157 .. 0.82

  Alignments for each domain:
  == domain 1  score: 5.7 bits;  conditional E-value: 0.0029
       PPR_2  17 gkveeAfklfneMkkrglePnsyTys 42 
                 g+ve  + +++ M+   + P+syT  
  KOO24898.1  88 GRVERVLGILERMRADRVAPSSYTLQ 113
                 78999999****************76 PP

  == domain 2  score: 4.2 bits;  conditional E-value: 0.0085
       PPR_2  24 klfneMkkrglePnsyTysilikglc 49 
                 k+++e  + g +Pn  ++  li +++
  KOO24898.1 132 KILQEQMRAGMRPNRASFDALIEACA 157
                 666666789**************985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (410 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       763  (0.0425568); expected 358.6 (0.02)
Passed bias filter:                      479  (0.0267165); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.48u 0.24s 00:00:00.72 Elapsed: 00:00:00.39
# Mc/sec: 3154.69
//
Query:       KOO24899.1  [L=650]
Description: ATP-dependent DNA helicase ddm1-like protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.7e-14   53.7   0.1    3.3e-14   52.8   0.1    1.5  1  PABP         Poly-adenylate binding protein, unique domain
    5.9e-12   45.5   0.0    1.3e-11   44.3   0.0    1.5  1  RNA_GG_bind  PHAX RNA-binding domain
  ------ inclusion threshold ------
      0.087   12.7   0.2       0.26   11.2   0.2    1.7  1  F-box-like   F-box-like


Domain annotation for each model (and alignments):
>> PABP  Poly-adenylate binding protein, unique domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.8   0.1   5.5e-18   3.3e-14       3      68 .]      10      76 ..       8      76 .. 0.92

  Alignments for each domain:
  == domain 1  score: 52.8 bits;  conditional E-value: 5.5e-18
        PABP  3 elakaspeqqkqiLGerLypkiqkl.npelAgKITGMLLemdnsellellesdeeLrekveeAievl 68
                ++++++   + q LG+ Ly  i ++  + lAgK+TGML+em+++++l+ l ++ +L++ v+eA++vl
  KOO24899.1 10 TVDALEHAARMQYLGSALYASIFQMlGEPLAGKVTGMLIEMPTQNILDCLREHVTLKATVDEALKVL 76
                67788889999***********9996669************************************97 PP

>> RNA_GG_bind  PHAX RNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.3   0.0   2.2e-15   1.3e-11      18      74 ..     197     253 ..     182     262 .. 0.90

  Alignments for each domain:
  == domain 1  score: 44.3 bits;  conditional E-value: 2.2e-15
  RNA_GG_bind  18 ervvkvlGkekalelleeteeieknGGlltadgsrrRtpGGVFlnllknsesiskee 74 
                  + vv++lG   alell+ +e+i+++GG+l+++  + Rt+GG+F++llk+ ++++  e
   KOO24899.1 197 RAVVETLGAPAALELLAAVERIQAAGGMLVEETGKPRTSGGIFIKLLKEAKHLPAAE 253
                  579**********************************************99987665 PP

>> F-box-like  F-box-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.2   4.3e-05      0.26      19      38 ..     319     338 ..     314     341 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 4.3e-05
  F-box-like  19 sdLlrlalVCrrWrrvaldt 38 
                 s Ll +++VCr Wr +a+++
  KOO24899.1 319 SALLGCSAVCRVWRIAAARP 338
                 56899***********9776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (650 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       635  (0.0354175); expected 358.6 (0.02)
Passed bias filter:                      540  (0.0301188); expected 358.6 (0.02)
Passed Vit filter:                        47  (0.00262145); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.59u 0.25s 00:00:00.84 Elapsed: 00:00:00.41
# Mc/sec: 4807.29
//
Query:       KOO24900.1  [L=305]
Description: hypothetical protein Ctob_006032, partial [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
  ------ inclusion threshold ------
      0.015   15.4  17.8       0.05   13.7   1.0    2.6  2  ApoLp-III    Apolipophorin-III precursor (apoLp-III)
       0.25   11.2   5.8          2    8.3   0.7    2.4  2  LapD_MoxY_N  LapD/MoxY periplasmic domain
        1.1    8.9  10.7        5.4    6.7   5.7    3.4  2  DUF842       Eukaryotic protein of unknown function (DUF842)
          3    8.1   7.4        1.1    9.5   0.2    3.0  2  DUF1319      Protein of unknown function (DUF1319)


Domain annotation for each model (and alignments):
>> ApoLp-III  Apolipophorin-III precursor (apoLp-III)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   1.0   1.1e-05      0.05      64     138 ..       9      83 ..       5      90 .. 0.85
   2 ?    7.5   8.1   0.00093       4.2      25     127 ..     128     227 ..     118     234 .. 0.86

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 1.1e-05
   ApoLp-III  64 kkkieetadklseenPevkkkaqelqekvQsgvqslvkesqklaeslkensqeakeklakaikqayddaveaaqk 138
                 ++++ ++ ++l+ ++   +k ++   + +Qs v++l+ ++ ++ e lk++   ++++ a+a   a d+a+eaa++
  KOO24900.1   9 REELRRMPEELQRSSRLDQKRLEGQISRLQSEVRTLLADVVAAKEGLKQSELRIEAECAAAATVAHDEAFEAARE 83 
                 6778888888888544445556666789********************************************987 PP

  == domain 2  score: 7.5 bits;  conditional E-value: 0.00093
   ApoLp-III  25 etiKensenlvdqlkqvikslqeelkkksdeleealkevkkkieetadklseenPevkkkaqelqekvQsgvqslvkesqklaeslkensqeakeklak 123
                 e+ + +  +++d +     ++ e+++ + +el   l+ v ++ e ++d+l  ++ +++  +q+ ++k Q  +q+ +   + +a++l +++++a+ + a 
  KOO24900.1 128 EERQRSQREIADAIARAKVEAAEAMAAEKGELHARLERVAQEAEAIRDELGRSKRAMEDTVQAERAKAQHELQAAA---ERAAADLAAAAEKAQREQAV 223
                 55667778899999999999**************************************************999865...66778888888888887777 PP

   ApoLp-III 124 aikq 127
                 a+k+
  KOO24900.1 224 ALKA 227
                 6665 PP

>> LapD_MoxY_N  LapD/MoxY periplasmic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.3   0.7   0.00044         2       5      45 ..      78     118 ..      77     140 .. 0.92
   2 ?    5.1   0.4    0.0044        20       5      62 ..     188     244 ..     187     259 .. 0.85

  Alignments for each domain:
  == domain 1  score: 8.3 bits;  conditional E-value: 0.00044
                  HHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHTT-HHHHHH CS
  LapD_MoxY_N   5 vnnarqyleeqleskaqdtatsLglslsqalekedpvtvel 45 
                  +++ar+  e+ l+ +a ++at+L  +ls+a +++d++++  
   KOO24900.1  78 FEAAREEKEKALRLAATHAATALEDALSRAKAERDAALAAA 118
                  6899****************************999988765 PP

  == domain 2  score: 5.1 bits;  conditional E-value: 0.0044
                  HHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHTT-HHHHHHHHHHHHHHS-ESEEEEE CS
  LapD_MoxY_N   5 vnnarqyleeqleskaqdtatsLglslsqalekedpvtvellinalfDsgyyssirlt 62 
                  v+++r   +++l+++a+ +a  L+ + ++a+  e++v+++ + ++   +  ++++++ 
   KOO24900.1 188 VQAERAKAQHELQAAAERAAADLAAAAEKAQR-EQAVALKAMEESYLANPIIKEVEVI 244
                  6789999*******************999999.9999999998888887777777765 PP

>> DUF842  Eukaryotic protein of unknown function (DUF842)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.4   0.3     0.026   1.2e+02      61      92 ..       5      36 ..       1     124 [. 0.76
   2 ?    6.7   5.7    0.0012       5.4      37     116 ..     128     209 ..      96     253 .. 0.74

  Alignments for each domain:
  == domain 1  score: 2.4 bits;  conditional E-value: 0.026
      DUF842 61 qkvvqqEleqfqerLqrcvmvCqdkakdklgp 92
                ++v+ +El ++ e+Lqr+    q++++ +++ 
  KOO24900.1  5 NAVLREELRRMPEELQRSSRLDQKRLEGQISR 36
                56788899999999999888877777777732 PP

  == domain 2  score: 6.7 bits;  conditional E-value: 0.0012
      DUF842  37 ddrkasresveqCvekCseplqkaqkvvqqEleqfqerLqrcvmvC...qdkakdklgp..nssekqtakaekelekCvakCvdd 116
                 ++r++s+ ++ + + +++ ++++a +    E +++  rL+r ++++    d++  ++++  ++ ++++aka++el+  +++++ d
  KOO24900.1 128 EERQRSQREIADAIARAKVEAAEAMA---AEKGELHARLERVAQEAeaiRDELGRSKRAmeDTVQAERAKAQHELQAAAERAAAD 209
                 56778888888888888877666555...55555566777777766222555554444453447777778888877777766655 PP

>> DUF1319  Protein of unknown function (DUF1319)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   0.2   0.00024       1.1      45      76 ..      27      59 ..      13      90 .. 0.83
   2 ?    0.2   2.7      0.19   8.3e+02      49      89 ..     215     255 ..     123     275 .. 0.78

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 0.00024
     DUF1319 45 rrslekqlkklkselkklrelylerr.Plskqe 76
                ++ le q+++l+se+++l ++ +  +  l ++e
  KOO24900.1 27 QKRLEGQISRLQSEVRTLLADVVAAKeGLKQSE 59
                6789**************999987661455555 PP

  == domain 2  score: 0.2 bits;  conditional E-value: 0.19
     DUF1319  49 ekqlkklkselkklrelylerrPlskqeveelvveiskqPk 89 
                 ek  ++    lk ++e yl +  + + ev + vv++ +  k
  KOO24900.1 215 EKAQREQAVALKAMEESYLANPIIKEVEVIKQVVKVKEVIK 255
                 55556666678888999998888888889888888765443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (305 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2433  (0.135702); expected 358.6 (0.02)
Passed bias filter:                      561  (0.0312901); expected 358.6 (0.02)
Passed Vit filter:                        97  (0.00541023); expected 17.9 (0.001)
Passed Fwd filter:                        30  (0.00167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.87u 0.31s 00:00:01.18 Elapsed: 00:00:00.47
# Mc/sec: 1950.21
//
Query:       KOO24901.1  [L=113]
Description: hypothetical protein Ctob_006684 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (113 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       304  (0.0169558); expected 358.6 (0.02)
Passed bias filter:                      243  (0.0135535); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.26s 00:00:00.60 Elapsed: 00:00:00.40
# Mc/sec: 852.87
//
Query:       KOO24902.1  [L=522]
Description: wd40 repeat-containing protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.9e-24   85.4  15.0    4.1e-08   33.8   0.0    6.1  7  WD40         WD domain, G-beta repeat
    7.6e-05   22.9   0.0      0.049   13.9   0.0    4.3  5  ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain
  ------ inclusion threshold ------
      0.029   14.5   0.7      0.052   13.7   0.7    1.3  1  bZIP_1       bZIP transcription factor
        0.1   11.5   0.1       0.16   10.9   0.1    1.2  1  Ge1_WD40     WD40 region of Ge1, enhancer of mRNA-decapping p


Domain annotation for each model (and alignments):
>> WD40  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.8   0.0   9.2e-12   4.1e-08       5      37 ..     129     162 ..     125     162 .. 0.91
   2 !   20.8   4.4   1.2e-07   0.00052       7      38 .]     178     207 ..     170     207 .. 0.86
   3 ?   -2.7   0.1         3   1.3e+04      12      24 ..     222     236 ..     217     251 .. 0.56
   4 ?    3.4   0.0     0.036   1.6e+02      13      38 .]     269     294 ..     258     294 .. 0.87
   5 ?   -2.0   0.0       1.8   8.2e+03      18      29 ..     323     334 ..     302     338 .. 0.73
   6 ?    1.4   0.0      0.15   6.7e+02      25      38 .]     369     382 ..     353     382 .. 0.74
   7 !   27.5   0.0   8.4e-10   3.8e-06       2      37 ..     466     502 ..     465     502 .. 0.92

  Alignments for each domain:
  == domain 1  score: 33.8 bits;  conditional E-value: 9.2e-12
                 EEEESS.SSEEEEEEETTSSEEEEEETTSEEEEE CS
        WD40   5 rtltGH.ssvtslafspdgawlasGsdDgtvriW 37 
                  tl+GH + v+ +afsp+g++lasGs D++vr W
  KOO24902.1 129 CTLRGHgGAVYTVAFSPNGRLLASGSFDRSVRCW 162
                 689***777************************* PP

  == domain 2  score: 20.8 bits;  conditional E-value: 1.2e-07
                 EESSSSEEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40   7 ltGHssvtslafspdgawlasGsdDgtvriWd 38 
                  t   +v+sl++s d++ ++sGs D+t+r Wd
  KOO24902.1 178 HTH--HVSSLSWSADSRSVLSGSFDHTIRWWD 207
                 333..5*************************9 PP

  == domain 3  score: -2.7 bits;  conditional E-value: 3
                 S..EEEEEEETTSSE CS
        WD40  12 s..vtslafspdgaw 24 
                 s  v ++a +p+ + 
  KOO24902.1 222 SafVQAVAHHPNMPS 236
                 344888888887665 PP

  == domain 4  score: 3.4 bits;  conditional E-value: 0.036
                 EEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40  13 vtslafspdgawlasGsdDgtvriWd 38 
                 v+s+ f p g  +++G++ g +r Wd
  KOO24902.1 269 VNSMLFLPRGEHVLTGDRHGALRTWD 294
                 99999***********9999999998 PP

  == domain 5  score: -2.0 bits;  conditional E-value: 1.8
                 EETTSSEEEEEE CS
        WD40  18 fspdgawlasGs 29 
                  + ++aw+a++s
  KOO24902.1 323 LPVSSAWVAAAS 334
                 466789998876 PP

  == domain 6  score: 1.4 bits;  conditional E-value: 0.15
                 EEEEETTSEEEEEE CS
        WD40  25 lasGsdDgtvriWd 38 
                 la  s+D t+ri+d
  KOO24902.1 369 LAVNSYDDTLRIFD 382
                 444478******98 PP

  == domain 7  score: 27.5 bits;  conditional E-value: 8.4e-10
                 EEEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEE CS
        WD40   2 qclrtltGH.ssvtslafspdgawlasGsdDgtvriW 37 
                 ++l+ l+GH + v++++f+ + ++lasGs D t+++W
  KOO24902.1 466 SLLQRLRGHtDRVYAVDFHNELPLLASGSADFTIKLW 502
                 67899****666************************* PP

>> ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.9   0.0   1.1e-05     0.049      36      90 ..     133     188 ..     126     190 .. 0.88
   2 !    5.8   0.1    0.0037        17      35      71 ..     176     212 ..     172     256 .. 0.88
   3 ?    0.6   0.0      0.16   7.3e+02      11      69 ..     239     297 ..     235     317 .. 0.65
   4 ?   -1.2   0.0      0.56   2.5e+03      50      67 ..     366     383 ..     364     385 .. 0.89
   5 ?   -1.9   0.0      0.92   4.1e+03      38      65 ..     475     502 ..     469     508 .. 0.82

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 1.1e-05
  ANAPC4_WD40  36 kedsevrsLaWkpdgklLavaysdgevrlldaesgkvvhslsvksek.avtclgWg 90 
                  ++++ v  +a++p+g+lLa +  d +vr   +e  +  ++l  ++++ +v++l+W+
   KOO24902.1 133 GHGGAVYTVAFSPNGRLLASGSFDRSVRCWAVEGVQPTETLCLDKHThHVSSLSWS 188
                  678999****************************9999998777665589****97 PP

  == domain 2  score: 5.8 bits;  conditional E-value: 0.0037
  ANAPC4_WD40  35 dkedsevrsLaWkpdgklLavaysdgevrlldaesgk 71 
                  dk+ ++v+sL+W+ d +    +  d ++r  d  +g 
   KOO24902.1 176 DKHTHHVSSLSWSADSRSVLSGSFDHTIRWWDLDKGV 212
                  578899**********************999998875 PP

  == domain 3  score: 0.6 bits;  conditional E-value: 0.16
  ANAPC4_WD40  11 AlatedgellvfRlngqrvwtleedkedsevrsLaWkpdgklLavaysdgevrlldaes 69 
                  A+at+++++l+f         ++e +++  v+s+ + p g+    +   g++r  d  +
   KOO24902.1 239 AVATTSNSVLLFDARVAADKPTAELANGTMVNSMLFLPRGEHVLTGDRHGALRTWDLRH 297
                  45555555555422222212224557788888888888888888888888888777655 PP

  == domain 4  score: -1.2 bits;  conditional E-value: 0.56
  ANAPC4_WD40  50 gklLavaysdgevrllda 67 
                  ++lLav   d ++r++d+
   KOO24902.1 366 DRLLAVNSYDDTLRIFDS 383
                  689************986 PP

  == domain 5  score: -1.9 bits;  conditional E-value: 0.92
  ANAPC4_WD40  38 dsevrsLaWkpdgklLavaysdgevrll 65 
                    +v ++ ++++  lLa + +d +++l 
   KOO24902.1 475 TDRVYAVDFHNELPLLASGSADFTIKLW 502
                  5678889999999999999999999885 PP

>> bZIP_1  bZIP transcription factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.7   1.2e-05     0.052      27      61 ..       5      39 ..       3      41 .. 0.89

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 1.2e-05
                HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
      bZIP_1 27 eieeLerrvkaLekeNksLkseleelkkevekLks 61
                ++  L +r ++L+ eNk+Lk++le  + ++  Lk 
  KOO24902.1  5 STVSLRNRLDVLTVENKQLKQRLEAAERDNRALKL 39
                6788*********************9999998886 PP

>> Ge1_WD40  WD40 region of Ge1, enhancer of mRNA-decapping protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.1   3.5e-05      0.16     185     242 ..     132     186 ..     115     247 .. 0.76

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 3.5e-05
    Ge1_WD40 185 eehs.liveaafspdGtalatasedGevkffqvyledeeeprCLheWkPhdGkslssll 242
                 + h   + + afsp+G  la  s d  v+ + v  ++ +e  CL +   h    +ssl 
  KOO24902.1 132 RGHGgAVYTVAFSPNGRLLASGSFDRSVRCWAVEGVQPTETLCLDKHTHH----VSSLS 186
                 5554478999**********************************987655....45554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (522 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       631  (0.0351944); expected 358.6 (0.02)
Passed bias filter:                      498  (0.0277762); expected 358.6 (0.02)
Passed Vit filter:                        77  (0.00429472); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.59u 0.30s 00:00:00.88 Elapsed: 00:00:00.46
# Mc/sec: 3396.23
//
Query:       KOO24903.1  [L=514]
Description: plastidic ATP ADP transporter [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   1.3e-178  594.8  10.3   1.6e-178  594.4  10.3    1.0  1  TLC       TLC ATP/ADP transporter
  ------ inclusion threshold ------
       0.82    8.5  44.1        1.3    7.9  29.9    2.2  2  MFS_1     Major Facilitator Superfamily


Domain annotation for each model (and alignments):
>> TLC  TLC ATP/ADP transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  594.4  10.3  1.8e-182  1.6e-178      20     453 ..      76     510 ..      64     513 .. 0.98

  Alignments for each domain:
  == domain 1  score: 594.4 bits;  conditional E-value: 1.8e-182
         TLC  20 rlelkkllplllllflilfnysilrdlKDslvvtasesgAEvipFlKvwgvlPsAilftliyaklsnklskekvFyiivsfflvffllFafvlyPlrel 118
                 + elkk++pl++++f+ilfny+ilrd+KD+lvvta  s+AE+ipFlK+w+ lP A+ ft++y+ l+n+l ++++Fy+++ +fl ff  Fa ++yP+r+l
  KOO24903.1  76 KEELKKIIPLAIMFFCILFNYTILRDTKDVLVVTAPGSSAEAIPFLKTWVNLPGAVAFTVLYSSLANRLGRQALFYTVLGPFLGFFGSFAWIIYPMRDL 174
                 469************************************************************************************************ PP

         TLC 119 lhleaeadklesilppglkglialvrnWsyalfYvlaELWgsvvlsllfWgfaneitkveeakrFYsllglvanlalivaGevlillsnirkklasavd 217
                 lh+ a++++l+s+lp g+   ia+++nW+y+lfY la +Wgsvv+sllfWgfane+t+v+eak++Y+l+g++an+al+++G+++ ++s ++++l+++vd
  KOO24903.1 175 LHPVALCAYLRSVLPLGFAAPIAVFQNWTYSLFYFLANMWGSVVVSLLFWGFANEVTTVSEAKKYYPLFGMFANVALVFSGQFVRYVSTLHSTLPAGVD 273
                 *************************************************************************************************** PP

         TLC 218 sweeslkvlvlivvilgliilllyrllnkkvltderly..laekkkkkkkkkklslkesfklllrskyllliavlviayglsinlvEvvWKaqikelyp 314
                 +w + lk+l++ vv+lg +i  ++r+ln +vl++++     a k + kkkk+++++ esfk+l+ sky++ +a+lv++yg+sinlvEv+WKa++ke +p
  KOO24903.1 274 AWGVALKLLMTTVVVLGGVIAGCFRYLNVAVLDKAEAAaaGAGKMAPKKKKPSMTFGESFKYLAASKYIRNLATLVVCYGMSINLVEVTWKAKLKEAFP 372
                 **********************************99985445566779*************************************************** PP

         TLC 315 tpneynafmgkltsltGvvtilimllssnilrkfgWtvaAlitPlillvtgvlFFslilfekelaeliasllgtsplllavvvGaiqnilsksaKyslf 413
                 +p +y+afmg+++s+tGv+t+++ml++  +l k+gW +aA+itP +ll tgv+FF+l+l+ +++a ++a++ gt+pll+av+vGa+qni+sk++Kyslf
  KOO24903.1 373 NPMDYSAFMGTFSSATGVSTLFMMLFGRFVLNKYGWGTAAMITPSVLLATGVAFFALCLAGNTFAPVLATF-GTTPLLVAVFVGAVQNIMSKASKYSLF 470
                 *********************************************************************99.*************************** PP

         TLC 414 DatkemayipldeeskvkgkaaidvvgarlGKSggsliqq 453
                 D++kemayipld e+k+kgkaa+dv+g  lGKSggsliqq
  KOO24903.1 471 DPCKEMAYIPLDAEQKTKGKAAVDVIGGPLGKSGGSLIQQ 510
                 ***************************************9 PP

>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.5  19.9      0.05   4.5e+02     209     351 ..      83     253 ..       6     255 .. 0.71
   2 ?    7.9  29.9   0.00014       1.3      68     325 ..     186     461 ..     176     468 .. 0.68

  Alignments for each domain:
  == domain 1  score: -0.5 bits;  conditional E-value: 0.05
       MFS_1 209 lwillialllfffgfsg.......lltllplylqevlglsglllaglllallalvgailallagrlsdrlgrrrrlllallllllaalglallavt... 297
                 +  l i+++++ f +++       l+++ p    +   ++ +l +   + l+++v++ +  l + l++rlgr+   +  l+ +l ++ ++a++  +   
  KOO24903.1  83 I-PLAIMFFCILFNYTIlrdtkdvLVVTAPG--SSAEAIP-FLKTW--VNLPGAVAFTV--LYSSLANRLGRQALFYTVLGPFLGFFGSFAWIIYPmrd 173
                 1.38899999988888899999988888888..9999999.9****..********766..**********9888888888888888888888888999 PP

       MFS_1 298 .........................ssavllllvlvliGf.glgfvfpsllalasdlappeeagtasglfntagslggal 351
                                            ++ + l+++l+ + g+ +v+ +++ +a++++  +ea +++ lf+++ +++ ++
  KOO24903.1 174 llhpvalcaylrsvlplgfaapiavFQNWTYSLFYFLANMwGSVVVSLLFWGFANEVTTVSEAKKYYPLFGMFANVALVF 253
                 99999999888888888877766643333333477779998888889999999999999999999999999999988766 PP

  == domain 2  score: 7.9 bits;  conditional E-value: 0.00014
       MFS_1  68 glllfalglllllfasslwlllvlrvlqGlgagalfpagaaliadwfpkeergraigllsagfslGailgpllggllasslg........Wrav.fyil 157
                 ++l +++++ +++f +++++ l+  +   +g+ ++  +   ++ ++++ +e  +++ l++++++++ ++   +  +++++ +        W ++  +++
  KOO24903.1 186 SVLPLGFAAPIAVF-QNWTYSLFYFLANMWGSVVVSLLFWGFANEVTTVSEAKKYYPLFGMFANVALVFSGQFVRYVSTLHStlpagvdaWGVAlKLLM 283
                 45555555445556.77668888888899998999999999999**********************************99999*******888756888 PP

       MFS_1 158 aivsllafvlfllllpeepperkrkspkeee......kgtgpaplvp......awkallkdpvlwillialllfffgfsg.lltllpl....ylqevlg 239
                 + v +l++v+++++ + +     + + +  +      k  +++   p       +k+l +++++  l + +++ ++ +++  +t+       +    ++
  KOO24903.1 284 TTVVVLGGVIAGCFRYLNVAVLDKAEAAAAGagkmapK--KKK---PsmtfgeSFKYLAASKYIRNLATLVVCYGMSINLvEVTWKAKlkeaF-PNPMD 376
                 88888889999999977776666666666655444331..222...24446679999999997764555555555566654666666655544.88888 PP

       MFS_1 240 lsglllaglllallalvgailallagrlsdrlgrrrrlllallllllaalglallavt...ssavllll..vlvliGfglgfvfpsllala 325
                 +s    +g++++++++ +++++l++ ++++++g+ ++ +++ ++ll++ ++++ l ++     +vl+ +        + ++++++++++++
  KOO24903.1 377 YS--AFMGTFSSATGVSTLFMMLFGRFVLNKYGWGTAAMITPSVLLATGVAFFALCLAgntFAPVLATFgtT----PLLVAVFVGAVQNIM 461
                 88..8888899999999999997777777**99966655554444444444444444411033333333332....333333333333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (514 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       697  (0.0388756); expected 358.6 (0.02)
Passed bias filter:                      335  (0.0186848); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.55u 0.26s 00:00:00.81 Elapsed: 00:00:00.42
# Mc/sec: 3635.48
//
Query:       KOO24904.1  [L=349]
Description: hypothetical protein Ctob_006683 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.015   15.5   0.0      0.028   14.5   0.0    1.5  1  ATP_transf  ATP adenylyltransferase


Domain annotation for each model (and alignments):
>> ATP_transf  ATP adenylyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.5   0.0   1.6e-06     0.028       2      62 ..     263     324 ..     262     326 .. 0.91

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 1.6e-06
  ATP_transf   2 YNllmtkewmvviPRsaegaeleevgglslNslglaGtllvkseeeldalkeepgpl.evLa 62 
                 +N+++  +  +v  Rs eg  +++v +l++ s+ l+G + v + e+++a  ++ + + + L+
  KOO24904.1 263 HNVVLLGDQTFVFVRSPEGEVSPAVPDLKIGSIQLLGAMVVDTAEQFEAAMRDGSAIeRALR 324
                 8********************99**************************9877777767776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (349 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       295  (0.0164538); expected 358.6 (0.02)
Passed bias filter:                      257  (0.0143343); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.26s 00:00:00.70 Elapsed: 00:00:00.42
# Mc/sec: 2511.46
//
Query:       KOO24905.1  [L=82]
Description: hypothetical protein Ctob_006680 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.11   12.5   0.0       0.13   12.1   0.0    1.1  1  DoxA      TQO small subunit DoxA


Domain annotation for each model (and alignments):
>> DoxA  TQO small subunit DoxA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   7.4e-06      0.13       2      42 ..      40      80 ..      39      82 .] 0.92

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 7.4e-06
        DoxA  2 hggvvGkLhNkskkpkleitgaklaengtLvleitrveGpd 42
                h+ ++G L  +sk+ + ++ +a++++++  +l++++v G d
  KOO24905.1 40 HDAAWGALQAQSKTLEAQLRQARFENKKGTMLHVAQVIGTD 80
                6789********************99999999***999998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (82 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       834  (0.0465168); expected 358.6 (0.02)
Passed bias filter:                      491  (0.0273858); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.34u 0.24s 00:00:00.58 Elapsed: 00:00:00.38
# Mc/sec: 655.00
//
Query:       KOO24906.1  [L=144]
Description: hypothetical protein Ctob_006681 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.11   12.5   0.7       0.72    9.9   0.0    2.5  3  EF-hand_6  EF-hand domain
        0.2   11.9   6.3        0.6   10.3   6.3    1.6  1  CENP-Q     CENP-Q, a CENPA-CAD centromere complex subunit
          1    9.0   4.2        1.9    8.2   0.1    2.8  3  EF-hand_5  EF hand


Domain annotation for each model (and alignments):
>> EF-hand_6  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.0      0.34     2e+03       4      11 ..      43      50 ..      42      52 .. 0.83
   2 ?   -3.3   0.0       2.1   1.2e+04      15      21 ..      95     101 ..      95     101 .. 0.82
   3 ?    9.9   0.0   0.00012      0.72       3      17 ..     124     138 ..     122     143 .. 0.86

  Alignments for each domain:
  == domain 1  score: -0.8 bits;  conditional E-value: 0.34
   EF-hand_6  4 eaFklfDk 11
                ++F+++D 
  KOO24906.1 43 DVFRQLDE 50
                69***997 PP

  == domain 2  score: -3.3 bits;  conditional E-value: 2.1
   EF-hand_6  15 GkidaeE 21 
                 G+id +E
  KOO24906.1  95 GSIDLDE 101
                 7899887 PP

  == domain 3  score: 9.9 bits;  conditional E-value: 0.00012
   EF-hand_6   3 reaFklfDkdgdGki 17 
                  ++F+ +D dgdG++
  KOO24906.1 124 LDLFRSWDADGDGQV 138
                 689**********97 PP

>> CENP-Q  CENP-Q, a CENPA-CAD centromere complex subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   6.3    0.0001       0.6      64     151 ..      14     121 ..      10     126 .. 0.70

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.0001
      CENP-Q  64 rdyeaLreLeknakaeare.rkeklkkehvllqesdseelslleassdevlgea......................sgtvfsdlepeldeellpllqqL 139
                 +d +  reL++ a+a+are  ++++  e  ++++ d+++  l+ +  ++v ++a                        +   ++++++ ++  p++qqL
  KOO24906.1  14 EDLKRARELQAAAEAAAREaIEKRADAEADVFRQLDESAALLERLLVEQVGQKAheleasklrdeikrltpppkkrVPKKLGSIDLDEGPDAPPIAQQL 112
                 788899999999999999977777777666666665555555444444344444567777777777777888877755667777778899999999999 PP

      CENP-Q 140 gshLesmrgnla 151
                 +s L   r+n+a
  KOO24906.1 113 ASAL---RANSA 121
                 9999...56665 PP

>> EF-hand_5  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.4   0.1     0.041   2.5e+02       3       9 ..      43      49 ..      41      50 .. 0.88
   2 ?   -1.9   0.1      0.47   2.8e+03      14      20 ..      95     101 ..      95     101 .. 0.77
   3 ?    8.2   0.1   0.00031       1.9       3      16 ..     125     138 ..     123     138 .. 0.88

  Alignments for each domain:
  == domain 1  score: 1.4 bits;  conditional E-value: 0.041
                HHHHHH- CS
   EF-hand_5  3 dtFqaiD 9 
                d+F+++D
  KOO24906.1 43 DVFRQLD 49
                79****9 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 0.47
                 SCE-HHH CS
   EF-hand_5  14 GkIskeE 20 
                 G I+ +E
  KOO24906.1  95 GSIDLDE 101
                 7888887 PP

  == domain 3  score: 8.2 bits;  conditional E-value: 0.00031
                 HHHHHH-SS-SSCE CS
   EF-hand_5   3 dtFqaiDlNgDGkI 16 
                 d+F+  D++gDG++
  KOO24906.1 125 DLFRSWDADGDGQV 138
                 789999******86 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (144 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       868  (0.0484132); expected 358.6 (0.02)
Passed bias filter:                      466  (0.0259914); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.39u 0.27s 00:00:00.66 Elapsed: 00:00:00.41
# Mc/sec: 1056.72
//
Query:       KOO24907.1  [L=279]
Description: hypothetical protein Ctob_006686 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (279 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       191  (0.0106531); expected 358.6 (0.02)
Passed bias filter:                      175  (0.00976072); expected 358.6 (0.02)
Passed Vit filter:                         9  (0.00050198); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.43u 0.23s 00:00:00.66 Elapsed: 00:00:00.41
# Mc/sec: 2041.00
//
Query:       KOO24908.1  [L=156]
Description: hypothetical protein Ctob_006687 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.43   10.1   2.1        1.7    8.2   0.1    2.7  3  DUF1155   Protein of unknown function (DUF1155)


Domain annotation for each model (and alignments):
>> DUF1155  Protein of unknown function (DUF1155)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.2   0.1   9.5e-05       1.7       3      26 ..       8      31 ..       6      39 .. 0.87
   2 ?    0.1   0.0     0.031   5.5e+02      12      19 ..      57      64 ..      55      72 .. 0.88
   3 ?   -1.8   0.1      0.13   2.3e+03      12      17 ..     104     109 ..     102     112 .. 0.75

  Alignments for each domain:
  == domain 1  score: 8.2 bits;  conditional E-value: 9.5e-05
     DUF1155  3 ATLSTTLSFEPPLSLLAEPGTWFA 26
                A  S TLS  P   +LA PG + A
  KOO24908.1  8 AASSSTLSQGPAYHVLAAPGDFLA 31
                67799***************8877 PP

  == domain 2  score: 0.1 bits;  conditional E-value: 0.031
     DUF1155 12 EPPLSLLA 19
                EPPL  LA
  KOO24908.1 57 EPPLKTLA 64
                99*99887 PP

  == domain 3  score: -1.8 bits;  conditional E-value: 0.13
     DUF1155  12 EPPLSL 17 
                 EPPL  
  KOO24908.1 104 EPPLKT 109
                 9**975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (156 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       332  (0.0185175); expected 358.6 (0.02)
Passed bias filter:                      261  (0.0145574); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.35u 0.24s 00:00:00.59 Elapsed: 00:00:00.38
# Mc/sec: 1244.84
//
Query:       KOO24909.1  [L=413]
Description: hypothetical protein Ctob_006679 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
  ------ inclusion threshold ------
          1    8.8   6.8        2.4    7.6   0.4    2.2  2  Allexi_40kDa    Allexivirus 40kDa protein
        5.4    6.8  10.4        1.1    9.1   4.9    2.1  2  PIN_8           PIN like domain
        6.3    5.6  14.2        9.8    5.0  14.2    1.3  1  Cytochrom_C552  Cytochrome c552


Domain annotation for each model (and alignments):
>> Allexi_40kDa  Allexivirus 40kDa protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.6   0.4   0.00041       2.4      82     137 ..     180     235 ..     157     273 .. 0.80
   2 ?    4.4   1.1    0.0038        23      77     146 ..     301     369 ..     278     396 .. 0.80

  Alignments for each domain:
  == domain 1  score: 7.6 bits;  conditional E-value: 0.00041
  Allexi_40kDa  82 elrdalrtltklldklksvekklelsaetasdskllkklesietsleelhakldel 137
                   ++ +a  +l +   +l+s + +l++ +++++  +++ + +++et+l+e++++l+  
    KOO24909.1 180 QVEHARSELVQAKAELHSAHAELRAGEQKEKAAQAVAQATALETKLKEVGNRLRAP 235
                   6777778899999999************************************9764 PP

  == domain 2  score: 4.4 bits;  conditional E-value: 0.0038
  Allexi_40kDa  77 ttlLselrdalrtltklldklksvekklelsaetasdskllkklesietsleelhakldelsssetsese 146
                   + +L+e ++a ++l+  l++ k++++++el +++a+   ll++ e++e +l   h +l +l+ +++ + +
    KOO24909.1 301 ERQLAEAKAAAEALQA-LQDAKAKHERIELLHRQADRIALLRQSETLEAKLSLAHYELGQLALHKAAQDD 369
                   5678999999888865.67778888889999999999999******************999988776655 PP

>> PIN_8  PIN like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.5   0.3     0.077   4.6e+02      86     131 ..     164     212 ..     137     221 .. 0.61
   2 ?    9.1   4.9   0.00018       1.1      23     125 ..     221     325 ..     213     350 .. 0.76

  Alignments for each domain:
  == domain 1  score: 0.5 bits;  conditional E-value: 0.077
       PIN_8  86 kkkaldteelrkelkkqleelkeel...kaeleelkksskadkeedpil 131
                 +  a + + +r +++ q+e++++el   kael++++ + +a +++++  
  KOO24909.1 164 QLSAAELRAVRTRYEYQVEHARSELvqaKAELHSAHAELRAGEQKEKAA 212
                 2333337777788888888888888655555555555555544444444 PP

  == domain 2  score: 9.1 bits;  conditional E-value: 0.00018
       PIN_8  23 llkvlekladrlwvPhqval.Efq.rnresvis.kekkayedlekeleklkkaaekkleealkkwakkkaldteelrkelkkqleelkeelkaeleelk 118
                 l + l+++++rl  P+ +++  f+ r+res+ +  + +a+ +++++le + +aa +  ++ +++  ++++l+++++++++++ql+e+k +  + l++l+
  KOO24909.1 221 LETKLKEVGNRLRAPATALAfSFWaRERESAQHnARLHALLEQQRALEVALSAAREGAQAEASQLVAEASLQASTIESRYERQLAEAKAAA-EALQALQ 318
                 5567999********98754389967777666534557788888999999999999999*****************************999.3333333 PP

       PIN_8 119 ksskadk 125
                 ++  +++
  KOO24909.1 319 DAKAKHE 325
                 3333332 PP

>> Cytochrom_C552  Cytochrome c552
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.0  14.2    0.0016       9.8     289     422 ..     183     323 ..     149     340 .. 0.53

  Alignments for each domain:
  == domain 1  score: 5.0 bits;  conditional E-value: 0.0016
                     HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH.............HHHHHCT--HHHHHHHHHHHHH.......HHHHHHHHHSSTTHHHHSHHHH CS
  Cytochrom_C552 289 eLkeqveaiqervaelklraedalvkahkea.............kkaedagateeelkearelirk.......aqwrldfvaAensagfHaPeea 363
                     + +++  + ++           +l +a                 ++  +a a e++lke+ +  r        ++w     +A++ a +Ha  e 
      KOO24909.1 183 HARSELVQAKA-----------ELHSA---HaelrageqkekaaQAVAQATALETKLKEVGNRLRApatalafSFWARERESAQHNARLHALLEQ 263
                     22222222222...........22222...123344554433333333444555555544444443222221168999999************** PP

                     HHHHHHHHHHHHH.HHHHHHHHHHHTT-TS---.---.SSHHHHHHHTT--HHHHHHHHHH CS
  Cytochrom_C552 364 lrvlasavdkaak.arlklakllakagvkdevaipdi.stlekakkalkvdveklkaekek 422
                      r l+ a+++a++ a+++  +l+a+a++++++       +l++ak+a+    ++l+ +k+k
      KOO24909.1 264 QRALEVALSAAREgAQAEASQLVAEASLQASTIESRYeRQLAEAKAAA-EALQALQDAKAK 323
                     **********99746888999999999888333222202233333222.222333333322 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (413 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1673  (0.0933125); expected 358.6 (0.02)
Passed bias filter:                      473  (0.0263818); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.60u 0.25s 00:00:00.85 Elapsed: 00:00:00.38
# Mc/sec: 3247.21
//
Query:       KOO24910.1  [L=287]
Description: short-chain dehydrogenase reductase sdr, partial [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.3e-24   86.8   0.1      2e-24   86.2   0.1    1.3  1  adh_short     short chain dehydrogenase
    4.6e-19   68.9   0.3    7.8e-19   68.1   0.3    1.3  1  adh_short_C2  Enoyl-(Acyl carrier protein) reductase
    9.2e-13   48.5   0.2    1.5e-12   47.8   0.2    1.3  1  KR            KR domain
    0.00021   20.6   0.1    0.00096   18.4   0.0    1.9  2  NAP           Nucleosome assembly protein (NAP)
     0.0085   16.2   0.0      0.031   14.4   0.0    2.0  2  Phage_TAC_7   Phage tail assembly chaperone proteins, E, or 4
  ------ inclusion threshold ------
       0.04   13.3   0.5       0.04   13.3   0.5    1.6  2  VWA_CoxE      VWA domain containing CoxE-like protein


Domain annotation for each model (and alignments):
>> adh_short  short chain dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   86.2   0.1   6.6e-28     2e-24       2     126 ..     149     285 ..     148     287 .] 0.90

  Alignments for each domain:
  == domain 1  score: 86.2 bits;  conditional E-value: 6.6e-28
                 EEEEESTTSHHHHHHHHHHH......HTT-EEEE..EESCHHHHHHHHHHHHHT...TSEEEEEE-TTTSHHHHHHHHHHHHHHHSSESEEEE---S.S CS
   adh_short   2 vvlvtGassGIGraiakela......keGakvvv..vdrseekleevakelkee...gakalaiqvDvtdreevealvekavkklgkldvLvnNAGi.t 88 
                 v+l+tG++ GIGra+a +la      ++Ga+v++  ++r+++ lee+a e++++   g ++l+ ++D+t +++v+ l++++++++g+ld+L nNAG   
  KOO24910.1 149 VALITGGGTGIGRAVALRLAaggwqrEAGAQVAIvlTGRRADVLEETAREIRKAhgeGVHVLVHAADLTLAADVKGLFNAVASNFGRLDLLFNNAGAnV 247
                 89*****************9333333356666654599**************999888899999*********************************77 PP

                 --SSGGGCSHHHHHHHHHHHTHHHHHHHHHHHHHHHHC CS
   adh_short  89 gsgpfselseeewervievNltgvflltravlpamlkq 126
                  +++f +++ ++w+rvi++Nl ++f+++r ++++m +q
  KOO24910.1 248 PPTTFDKMEYDDWRRVININLDAAFHVARDAYRMMRDQ 285
                 88999******************************876 PP

>> adh_short_C2  Enoyl-(Acyl carrier protein) reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   68.1   0.3   2.6e-22   7.8e-19       4     120 ..     157     285 ..     153     286 .. 0.86

  Alignments for each domain:
  == domain 1  score: 68.1 bits;  conditional E-value: 2.6e-22
                   TSHHHHHHHHHH......HTT-EEEEEESSGGH...HHHHHHHHHHTTSEE....EE--TTSHHHHHHHHHHHHHHHSSEEEEEE-----EGCSS-G CS
  adh_short_C2   4 sgIGraiAkala......eeGaevvltdlneea...kkrveelaeelgaev....lecDVtdeeqvealveevvekfgklDilvnnagiapklkgpf 87 
                    gIGra+A +la      e+Ga+v+++  +++a   +++++e+ +++g+ v     ++D t  ++v+ l+++v+++fg+lD l+nnag   +  + f
    KOO24910.1 157 TGIGRAVALRLAaggwqrEAGAQVAIVLTGRRAdvlEETAREIRKAHGEGVhvlvHAADLTLAADVKGLFNAVASNFGRLDLLFNNAGANVP-PTTF 252
                   69********98333333577888776666655458899999999999663346799********************************999.99** PP

                   GGH-HHHHHHHHHHHTHHHHHHHHHHHHHCTSC CS
  adh_short_C2  88 letsreefdraldvnlyslfllakaalplmkeg 120
                    +++ ++++r++++nl ++f++a+ a ++m+++
    KOO24910.1 253 DKMEYDDWRRVININLDAAFHVARDAYRMMRDQ 285
                   ******************************976 PP

>> KR  KR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.8   0.2   5.1e-16   1.5e-12       2     112 ..     149     267 ..     148     277 .. 0.89

  Alignments for each domain:
  == domain 1  score: 47.8 bits;  conditional E-value: 5.1e-16
                 EEEEETTTSHHHHHHHHHHHH......HH.S-EEEEE-SS..--HHHHHHHHHHHHTT-EEEE----TT-HHHHHHHHHHHHHHSS---EEEE------ CS
          KR   2 tylitGGlGgLGlelarwlae......kg.arhlvllsRsaaadedskaliaelealgaevevvaaDvsdkdavealleeikaeeppikGvihaAgvlr 93 
                 + litGG  g+G+++a  la+       g +  +vl++R+a + e+ +++i++ +  g++v v aaD++ +++v+ l++++ ++++++   ++ Ag+  
  KOO24910.1 149 VALITGGGTGIGRAVALRLAAggwqreAGaQVAIVLTGRRADVLEETAREIRKAHGEGVHVLVHAADLTLAADVKGLFNAVASNFGRLDLLFNNAGANV 247
                 579*****************8555555553457**************************************************************9865 PP

                 .---TTT--HHHHHHHHTTT CS
          KR  94 .dklleemtaedleqvlapK 112
                   +++++m+ +d+++v++  
  KOO24910.1 248 pPTTFDKMEYDDWRRVININ 267
                 489*************9755 PP

>> NAP  Nucleosome assembly protein (NAP)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.4   0.0   3.2e-07   0.00096     107     191 ..      19      98 ..       5     102 .. 0.78
   2 ?   -0.7   0.1      0.22   6.6e+02     217     238 ..     103     122 ..      99     147 .. 0.55

  Alignments for each domain:
  == domain 1  score: 18.4 bits;  conditional E-value: 3.2e-07
                 -HHHHHHHTTEEEEEEEE-----.....--EEEEEEEE-S-SSB--SEEEEEEEE----........----EEEEEE----B-TT--TTS CS
         NAP 107 qerDepiLkhLkdirveyllske.....kegFtleFeFdeNpyFtnevLtktyilksevdkedpfiydgpeiekaegckIdWkegkdvtv 191
                 +e D  iL hL di++  +++++     ++   l   F++N++ +    t +  ++            + +++++ g +I W++gk  t 
  KOO24910.1  19 NELDLRILAHLADIQLAIKTHTDdaldeRDTVHLVLVFRPNEFLEPGFETLECAFD--------R--VKGQLKSTSGLEIRWRDGKAPTI 98 
                 57899***********986655577776666**************98766666666........1..13457899***********9996 PP

  == domain 2  score: -0.7 bits;  conditional E-value: 0.22
                 -GGGGS--B------------- CS
         NAP 217 SFFnfFsppkvpeeeeeeeeee 238
                 SFF+ F +    +++   ee++
  KOO24910.1 103 SFFDVFAKVGDFAQQ--AEEKA 122
                 9*****954222221..12222 PP

>> Phage_TAC_7  Phage tail assembly chaperone proteins, E, or 41 or 14
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.0       2.8   8.4e+03      56      69 ..       2      15 ..       1      17 [. 0.74
   2 !   14.4   0.0     1e-05     0.031      24      74 ..     212     263 ..     188     265 .. 0.88

  Alignments for each domain:
  == domain 1  score: -3.0 bits;  conditional E-value: 2.8
  Phage_TAC_7 56 sglppedlekLdla 69
                 +g+ ++d+e+L ++
   KOO24910.1  2 QGVLLHDVEALQSE 15
                 78888888888765 PP

  == domain 2  score: 14.4 bits;  conditional E-value: 1e-05
  Phage_TAC_7  24 tvkDlraaqlvkegkpdadllmgaeialiarlsg.lppedlekLdlaDlarl 74 
                   ++Dl+ a +vk+  +++ +++g++++l+ ++   +pp +++k+  +D++r+
   KOO24910.1 212 HAADLTLAADVKGLFNAVASNFGRLDLLFNNAGAnVPPTTFDKMEYDDWRRV 263
                  5677777778888888****************999**************997 PP

>> VWA_CoxE  VWA domain containing CoxE-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.5   1.3e-05      0.04     123     188 ..     149     214 ..     133     223 .. 0.85
   2 ?   -2.5   0.1      0.89   2.7e+03      29      55 ..     259     285 ..     258     287 .] 0.78

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 1.3e-05
    VWA_CoxE 123 ved.lgGgTrigaala..eflelvtrpaLsrravvvlvsDglergdreellaelarlvrrarrlvwlnp 188
                 v    gGgT ig+a+a   ++ +++r+a   +a v +v  g + +  ee ++e+++ +  ++++++ ++
  KOO24910.1 149 VALiTGGGTGIGRAVAlrLAAGGWQREA---GAQVAIVLTGRRADVLEETAREIRKAHGEGVHVLVHAA 214
                 566579******98762156779**999...****99999************************99877 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 0.89
    VWA_CoxE  29 Dlrrtlranlrhggelvelvrrkprer 55 
                 D+rr ++ nl ++  + + ++r  r++
  KOO24910.1 259 DWRRVININLDAAFHVARDAYRMMRDQ 285
                 999999999998888777777766665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (287 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       435  (0.0242624); expected 358.6 (0.02)
Passed bias filter:                      360  (0.0200792); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.45u 0.26s 00:00:00.71 Elapsed: 00:00:00.41
# Mc/sec: 2079.90
//
Query:       KOO24911.1  [L=854]
Description: coiled-coil domain-containing protein lobo-like isoform 1 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
     0.0004   20.8   0.0     0.0012   19.2   0.0    1.9  1  Transglut_core  Transglutaminase-like superfamily


Domain annotation for each model (and alignments):
>> Transglut_core  Transglutaminase-like superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.2   0.0   6.9e-08    0.0012      19      85 ..     119     189 ..     103     283 .. 0.80

  Alignments for each domain:
  == domain 1  score: 19.2 bits;  conditional E-value: 6.9e-08
  Transglut_core  19 kaiyewvrknveys....aprrtpgsrdaeavletgkGncedfaslfvallRalGipaRvvtgylsgeeek 85 
                     ++ +++v++ ++y+    a++  +   +++a+l  ++G+c d+a +++++l  +G  a vv gy +++ ++
      KOO24911.1 119 NKCAKFVADFIRYEplelASQLPSHMPSPSATLGWQAGDCFDMAMVLCSMLLGVGYDAYVVCGYAPAKITR 189
                     566778888888888764444444444599***********************************987654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (854 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1016  (0.056668); expected 358.6 (0.02)
Passed bias filter:                      581  (0.0324056); expected 358.6 (0.02)
Passed Vit filter:                        55  (0.00306766); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.72u 0.27s 00:00:00.99 Elapsed: 00:00:00.43
# Mc/sec: 5935.91
//
Query:       KOO24912.1  [L=454]
Description: hypothetical protein Ctob_004503 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
        2.3    8.2  14.4       0.38   10.8   0.7    2.5  2  STG       Simian taste bud-specific gene product family


Domain annotation for each model (and alignments):
>> STG  Simian taste bud-specific gene product family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.7   2.1e-05      0.38      18      56 ..      31      69 ..      15      87 .. 0.82
   2 ?    1.8   7.0     0.012   2.1e+02      37     135 ..     149     246 ..     109     265 .. 0.66

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 2.1e-05
         STG 18 nsehPqpkldpgsndlaraplklnaspsdgfqpaggsgv 56
                    P+ + d+g n l+r p k + sp++++++ag+++ 
  KOO24912.1 31 RPRDPNVAQDAGRNALKREPTKSSLSPAKSSPTAGSAKK 69
                55679999**************************98753 PP

  == domain 2  score: 1.8 bits;  conditional E-value: 0.012
         STG  37 plklnaspsdgfqpaggsgvq.kwppsegLpsmdsWpsedpWqmlaaavedhlgevlpeelsyLssavalplgsgllpagssaksadpspeasllhqds 134
                 +   ++  ++    a + ++q    ++  L+ +ds p e+p +  a+a e+ ++++ +     L  a+al +  +  ++++ ak a  ++ea    q+ 
  KOO24912.1 149 SAVASQEAAKHAAKAVAEARQlAAKAAAALKGADSLPNEAPGKYAAKAKEKAANKAAKGPAKALK-AAALVVAMRIALSEA-AKLAAQTAEAQKQVQQF 245
                 33333333333333444444514567789*****************9999999998877766665.567777666655544.45555555555555554 PP

         STG 135 e 135
                  
  KOO24912.1 246 T 246
                 4 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (454 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1396  (0.0778627); expected 358.6 (0.02)
Passed bias filter:                      384  (0.0214178); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.54u 0.28s 00:00:00.82 Elapsed: 00:00:00.44
# Mc/sec: 3090.15
//
Query:       KOO24913.1  [L=216]
Description: hypothetical protein Ctob_004502 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (216 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       213  (0.0118802); expected 358.6 (0.02)
Passed bias filter:                      173  (0.00964917); expected 358.6 (0.02)
Passed Vit filter:                         7  (0.000390429); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.39u 0.25s 00:00:00.64 Elapsed: 00:00:00.41
# Mc/sec: 1574.94
//
Query:       KOO24914.1  [L=129]
Description: hypothetical protein Ctob_004501, partial [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (129 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       711  (0.0396564); expected 358.6 (0.02)
Passed bias filter:                      265  (0.0147805); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.39u 0.24s 00:00:00.63 Elapsed: 00:00:00.40
# Mc/sec: 958.39
//
Query:       KOO24915.1  [L=443]
Description: nodulation protein noee [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.5e-14   53.7   1.1    6.2e-14   52.9   0.0    1.9  2  Sulfotransfer_3  Sulfotransferase family
     0.0001   21.9   0.0    0.00025   20.6   0.0    1.6  1  Sulfotransfer_1  Sulfotransferase domain


Domain annotation for each model (and alignments):
>> Sulfotransfer_3  Sulfotransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.9   0.0     7e-18   6.2e-14       2     214 ..      21     232 ..      21     235 .. 0.72
   2 ?   -2.2   0.3      0.49   4.4e+03      51      69 ..     367     385 ..     336     421 .. 0.45

  Alignments for each domain:
  == domain 1  score: 52.9 bits;  conditional E-value: 7e-18
                      EEEE--TTSSHHHHHHHHHTSTTEE--S--.--...TT.-SBHHHHHHHHTT.-S...TTTHHHHHHHHHH..T--HHHHHHHHHHHHHTT-BH CS
  Sulfotransfer_3   2 ifivGlpRSGTTlLhrlLaahpdvripeetlfv...aprllalleawskdgr.elrrlldagltqeeaelp..hledaeepeedlqllraalas 89 
                      i+i G  R GTTl+ +lL +hp+v +++e          +l+       +g+ +++++   g+  + + l    +   ++++e   l ++a  +
       KOO24915.1  21 IVIGGPHRGGTTLMWQLLRSHPAVGSFPERVASdfsEGSFLQTVL--PTFGVgNELQMGSGGVNAKPMGLGryAFSPDAHMTETHALNTRANSR 112
                      79***********************99999433111223333333..34554233444566677775555587444444555555565555555 PP

                      HHHHHHHHHHTTTS.EEEEEESSGGG-HHHHHHHB.....SSEEEEEEE--H.HHHHHHHHHTT----------..-HHHHHHHHHHHHHHHHH CS
  Sulfotransfer_3  90 vilealarvpsyar.wlvdKsPshlfrldlllelf.....PdAkfihlvRdpvdtvlssyvslfgkkresysedsldeledaleewarayerll 177
                      ++l ++    + +r +l++K+P+ +    ll +l+      +  f++l+R+p++ +l + +++ +      +++s+++    + +w  + + l 
       KOO24915.1 113 QLLSQWGYFWNTSRpVLLEKTPTDMLTSRLLQALLsppprQQTSFVFLTRHPLAVAL-AHMRWPA-----CRHQSVGS---LALHWLVSHRVLA 197
                      566666777666654999********999999998876556899********76554.4456634.....44344444...569*****99999 PP

                      HHHHHS-TTSEEEEEHHHHHH-HHHHHHHHHHHHT-- CS
  Sulfotransfer_3 178 aararlppdrfldvrYedLvadpegtlrriyeflglp 214
                       +  +l ++r   vrYedL +dp + +++++++l+lp
       KOO24915.1 198 SDLPHLRAAR--VVRYEDLARDPTACMHELIAWLQLP 232
                      9999999988..69*********************98 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 0.49
                      -S...TTTHHHHHHHHHH..T CS
  Sulfotransfer_3  51 elrrlldagltqeeaelp..h 69 
                      e+r   ++g +++e   +   
       KOO24915.1 367 EHR--AESGASDHEHRAEsgA 385
                      222..2333333322222221 PP

>> Sulfotransfer_1  Sulfotransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.6   0.0   2.8e-08   0.00025       4     199 ..      21     234 ..      18     273 .. 0.70

  Alignments for each domain:
  == domain 1  score: 20.6 bits;  conditional E-value: 2.8e-08
                      EEEEESTTSSHHHHHHHHHHHHTTTCC.....HHHTSSGHCT-HHHSCBTTHECCTSGCCGTTECCC...................HHHTTTEE CS
  Sulfotransfer_1   4 vlivtypKSGTtwlqellslitsegdf.....ekaeepalfnardrspfLelydlyfpnslkppdhl...................rsyshvae 73 
                      ++i ++ ++GTt + +ll+ ++ +g+f     ++++e  ++  ++++p               ++ l                    +  h++e
       KOO24915.1  21 IVIGGPHRGGTTLMWQLLRSHPAVGSFpervaSDFSEGSFL--QTVLPTFGV-----------GNELqmgsggvnakpmglgryafSPDAHMTE 101
                      678899*********************74444444444432..234444443...........3333446777778888***999978888888 PP

                      HHHHHHHSTSS.EEEE...GGGS.CHHHHTT-EEEEEE--HHHHHHHHHHHHHHBTTSTTT-S-HH.................HHHHHHHTTHS CS
  Sulfotransfer_1  74 kvvrlralesprllktHlplkllpkslldsnlKiiylvRnpkdvavSryhfsrslkklkepetpfe.................effdlflegrv 150
                      + +     +s++ll+           ++++  + ++l   p d++ Sr+ +   + + + ++t+f                  + +++   g +
       KOO24915.1 102 THALNTRANSRQLLSQ-------WGYFWNT-SRPVLLEKTPTDMLTSRLLQALLSPP-PRQQTSFVfltrhplavalahmrwpACRHQSV-GSL 185
                      8888888889999994.......2345655.899*****************977765.44444355567888777665333333333333.555 PP

                      TTC-HHHHHHHHHHHTTTTTEEEEEHHHHHHHHHHHHHHHHHHTT--.. CS
  Sulfotransfer_1 151 vcgsyfdhvkswlklrkkgnvlflrYEdlkkdpakeikkiaeFlGiplt 199
                       + + ++h      l +     ++rYEdl++dp  ++ +++  l +p +
       KOO24915.1 186 ALHWLVSHRVLASDLPHLRAARVVRYEDLARDPTACMHELIAWLQLPGS 234
                      55555555554444999999*********************99999944 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (443 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       512  (0.0285571); expected 358.6 (0.02)
Passed bias filter:                      304  (0.0169558); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.55u 0.23s 00:00:00.78 Elapsed: 00:00:00.41
# Mc/sec: 3214.43
//
Query:       KOO24916.1  [L=290]
Description: hypothetical protein Ctob_004504 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
     0.0001   22.0   5.3        1.3    9.3   0.0    4.0  4  LRR_6     Leucine Rich repeat
  ------ inclusion threshold ------
       0.02   15.3   1.6       0.33   11.4   0.1    2.3  2  LRR_4     Leucine Rich repeats (2 copies)


Domain annotation for each model (and alignments):
>> LRR_6  Leucine Rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.6   0.0    0.0045        40       6      24 .]     169     187 ..     167     187 .. 0.85
   2 !    7.2   0.8   0.00065       5.8       1      22 [.     192     213 ..     192     215 .. 0.91
   3 !    9.3   0.0   0.00014       1.3       1      23 [.     220     242 ..     220     243 .. 0.93
   4 ?   -0.6   0.0       0.2   1.8e+03       1      13 [.     254     266 ..     254     267 .. 0.86

  Alignments for each domain:
  == domain 1  score: 4.6 bits;  conditional E-value: 0.0045
       LRR_6   6 teLdLsgNdIgDeGaeaLa 24 
                 ++L L++N I+ +G+  La
  KOO24916.1 169 KKLWLNDNPITAAGVAFLA 187
                 667799********98776 PP

  == domain 2  score: 7.2 bits;  conditional E-value: 0.00065
       LRR_6   1 snthLteLdLsgNdIgDeGaea 22 
                 +n++L+eL L + + +D+G+  
  KOO24916.1 192 NNSTLEELYLHYTNCNDVGLGH 213
                 7******************965 PP

  == domain 3  score: 9.3 bits;  conditional E-value: 0.00014
       LRR_6   1 snthLteLdLsgNdIgDeGaeaL 23 
                 +n +L++L+L   +I+ +Ga a+
  KOO24916.1 220 KNKTLKKLELGNSGITEKGAGAI 242
                 699****************9988 PP

  == domain 4  score: -0.6 bits;  conditional E-value: 0.2
       LRR_6   1 snthLteLdLsgN 13 
                 +n++L++  L gN
  KOO24916.1 254 KNSTLEHMGLFGN 266
                 69****9999888 PP

>> LRR_4  Leucine Rich repeats (2 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.1   3.7e-05      0.33       3      34 ..     168     205 ..     166     213 .. 0.73
   2 ?    8.2   0.7   0.00037       3.3       3      37 ..     196     235 ..     194     237 .. 0.81

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 3.7e-05
                 --EEE--SS---E-S-..HH....H-TT--EEE-.-S- CS
       LRR_4   3 LevLdLsnNqltdipl..le....klpnLkeLdLsgNn 34 
                  ++L+L++N +t  +   l+    ++  L+eL+L+  n
  KOO24916.1 168 IKKLWLNDNPITAAGVafLAaalqNNSTLEELYLHYTN 205
                 689*********9888984443325555******6554 PP

  == domain 2  score: 8.2 bits;  conditional E-value: 0.00037
                 --EEE--SS---E-S-......HHH-TT--EEE-.-S---- CS
       LRR_4   3 LevLdLsnNqltdipl......leklpnLkeLdLsgNnlit 37 
                 Le+L+L+ ++  d++l      l+k++ Lk+L L gN+ it
  KOO24916.1 196 LEELYLHYTNCNDVGLghllemLGKNKTLKKLEL-GNSGIT 235
                 9******999999888888444558999******.997765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (290 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       477  (0.0266049); expected 358.6 (0.02)
Passed bias filter:                      386  (0.0215294); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.45u 0.28s 00:00:00.73 Elapsed: 00:00:00.44
# Mc/sec: 1980.06
//
Query:       KOO24917.1  [L=216]
Description: hypothetical protein Ctob_004506 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.6e-15   56.1   7.8    5.7e-15   55.4   6.4    1.8  2  Romo1     Reactive mitochondrial oxygen species modulator 1


Domain annotation for each model (and alignments):
>> Romo1  Reactive mitochondrial oxygen species modulator 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   0.0       0.1   1.8e+03      43      62 ..      22      42 ..       7      43 .. 0.60
   2 !   55.4   6.4   3.2e-19   5.7e-15       1      66 []      93     153 ..      93     153 .. 0.98

  Alignments for each domain:
  == domain 1  score: -0.6 bits;  conditional E-value: 0.1
       Romo1 43 lgksml.gsaatFGfFmsiGs 62
                l++    +++a  G  ms Gs
  KOO24917.1 22 LEQLQQqQGGAYGGELMSSGS 42
                555444045566667888887 PP

  == domain 2  score: 55.4 bits;  conditional E-value: 3.2e-19
       Romo1   1 scldkikmGalmGaaVGlaiGllfGtfsalryglrgrgllrtlgksmlgsaatFGfFmsiGsviRc 66 
                 +c+ k++ Ga++G+a+G aiG+++Gt++a++y+      + +l+ s+++ aa FGfF+++G+viRc
  KOO24917.1  93 QCMWKLQNGAMIGGALGSAIGFMYGTYAAIAYR-----HILYLPISVVSTAAGFGFFLACGTVIRC 153
                 6999*****************************.....9**************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (216 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       748  (0.0417201); expected 358.6 (0.02)
Passed bias filter:                      549  (0.0306208); expected 358.6 (0.02)
Passed Vit filter:                        52  (0.00290033); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.25s 00:00:00.69 Elapsed: 00:00:00.41
# Mc/sec: 1583.92
//
Query:       KOO24918.1  [L=319]
Description: calcium-binding mitochondrial carrier protein s -1 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.5e-24   82.5   5.4    1.1e-05   24.6   0.0    4.7  4  EF-hand_1        EF hand
    1.9e-21   76.3   2.7      4e-10   40.0   0.1    2.4  2  EF-hand_7        EF-hand domain pair
      4e-21   73.1   5.0     0.0007   19.3   0.1    4.5  4  EF-hand_6        EF-hand domain
    1.5e-18   65.4   2.6    2.5e-05   23.5   0.0    4.5  4  EF-hand_5        EF hand
      2e-14   53.2   2.1      2e-05   24.4   0.0    3.9  4  EF-hand_8        EF-hand domain pair
    9.7e-09   35.6   1.8    0.00061   20.1   0.5    2.3  2  SPARC_Ca_bdg     Secreted protein acidic and rich in cysteine
     0.0014   18.4   1.3        1.5    8.8   0.0    3.2  4  EF-hand_10       EF hand
     0.0066   15.0   0.3      0.027   13.0   0.2    1.9  1  DUF5580          Family of unknown function (DUF5580)
     0.0076   16.2   2.1        1.1    9.2   0.1    3.3  4  EF-hand_4        Cytoskeletal-regulatory complex EF hand
     0.0086   16.1   0.1        1.3    9.1   0.0    2.8  2  Sigma70_r1_1     Sigma-70 factor, region 1.1
  ------ inclusion threshold ------
       0.02   15.3   5.0        4.4    7.8   0.1    4.1  4  Toprim_2         Toprim-like
      0.073   13.3   0.0        1.5    9.1   0.0    2.8  3  PMBR             Pseudomurein-binding repeat
      0.076   13.5   0.6          4    8.0   0.0    3.2  4  Toprim_4         Toprim domain
      0.093   12.8   0.3       0.79    9.8   0.0    2.6  4  Transcript_VP30  Ebola virus-specific transcription factor VP
       0.22   12.0   1.8        9.2    6.8   0.2    2.4  2  GLTSCR1          Conserved region of unknown function on GLTS


Domain annotation for each model (and alignments):
>> EF-hand_1  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.0   3.5e-06    0.0042       4      26 ..      66      88 ..      64      91 .. 0.91
   2 !   24.2   0.1   1.3e-08   1.5e-05       2      28 ..     100     126 ..      99     127 .. 0.92
   3 !   16.6   0.0   3.3e-06     0.004       2      22 ..     208     228 ..     207     234 .. 0.94
   4 !   24.6   0.0   9.6e-09   1.1e-05       2      28 ..     244     270 ..     243     271 .. 0.91

  Alignments for each domain:
  == domain 1  score: 16.5 bits;  conditional E-value: 3.5e-06
                HHHHHHTTTSSSEEEHHHHHHHH CS
   EF-hand_1  4 eiFrefDkDgdGkIdfeEfkell 26
                ++F+ +D D++G ++ +E+ ++l
  KOO24918.1 66 KAFQSMDLDRSGSLNEKELARAL 88
                89*****************9998 PP

  == domain 2  score: 24.2 bits;  conditional E-value: 1.3e-08
                 HHHHHHHHTTTSSSEEEHHHHHHHHHH CS
   EF-hand_1   2 lkeiFrefDkDgdGkIdfeEfkellkk 28 
                 l+e++   D+DgdG++d++Ef+++l++
  KOO24918.1 100 LRELILCCDRDGDGQVDYKEFVDVLAR 126
                 899999*****************9975 PP

  == domain 3  score: 16.6 bits;  conditional E-value: 3.3e-06
                 HHHHHHHHTTTSSSEEEHHHH CS
   EF-hand_1   2 lkeiFrefDkDgdGkIdfeEf 22 
                 ++++F+++D D++G ++ eE+
  KOO24918.1 208 MRKAFQDIDLDHSGSLSAEEL 228
                 589*****************8 PP

  == domain 4  score: 24.6 bits;  conditional E-value: 9.6e-09
                 HHHHHHHHTTTSSSEEEHHHHHHHHHH CS
   EF-hand_1   2 lkeiFrefDkDgdGkIdfeEfkellkk 28 
                 +k ++   DkDg+G I++eEf+++l++
  KOO24918.1 244 FKALITACDKDGNGNISYEEFVDALAR 270
                 67889999***************9975 PP

>> EF-hand_7  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.0   0.1   3.3e-13     4e-10       4      68 ..      64     122 ..      62     125 .. 0.95
   2 !   36.3   0.3   4.9e-12   5.8e-09       2      69 ..     206     267 ..     205     269 .. 0.91

  Alignments for each domain:
  == domain 1  score: 40.0 bits;  conditional E-value: 3.3e-13
   EF-hand_7   4 lkeaFkelDtdgdgyldkeellrllrkifqgagegsklsdeelellfkefDtdkdGvisfdEFlk 68 
                 ++ aF+++D d++g+l++ el r+l         + ++++ +l++l+ + D d+dG++++ EF+ 
  KOO24918.1  64 MFKAFQSMDLDRSGSLNEKELARALD------LLNIPIDRPKLRELILCCDRDGDGQVDYKEFVD 122
                 5789******************9999......*******************************86 PP

  == domain 2  score: 36.3 bits;  conditional E-value: 4.9e-12
   EF-hand_7   2 eklkeaFkelDtdgdgyldkeellrllrkifqgagegsklsdeelellfkefDtdkdGvisfdEFlkl 69 
                 + ++ aF+ +D d++g+l+ eel +++       + +  l++++ ++l+   D+d++G is++EF+ +
  KOO24918.1 206 TNMRKAFQDIDLDHSGSLSAEELWQAFD------RLNLQLDRHSFKALITACDKDGNGNISYEEFVDA 267
                 568899****************766888......99999**************************976 PP

>> EF-hand_6  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.1   0.1   1.5e-06    0.0018       2      27 ..      64      89 ..      63      92 .. 0.92
   2 !   17.6   0.0   2.2e-06    0.0026       3      27 ..     101     125 ..      99     135 .. 0.82
   3 !   19.3   0.1   5.8e-07    0.0007       2      27 ..     208     233 ..     207     240 .. 0.91
   4 !   17.4   0.0   2.4e-06    0.0029       4      27 ..     246     269 ..     243     279 .. 0.84

  Alignments for each domain:
  == domain 1  score: 18.1 bits;  conditional E-value: 1.5e-06
   EF-hand_6  2 lreaFklfDkdgdGkidaeElrkalr 27
                + +aF+ +D d++G+++ +El +al 
  KOO24918.1 64 MFKAFQSMDLDRSGSLNEKELARALD 89
                789********************997 PP

  == domain 2  score: 17.6 bits;  conditional E-value: 2.2e-06
   EF-hand_6   3 reaFklfDkdgdGkidaeElrkalr 27 
                 re+    D+dgdG++d++E++++l 
  KOO24918.1 101 RELILCCDRDGDGQVDYKEFVDVLA 125
                 5555668***************997 PP

  == domain 3  score: 19.3 bits;  conditional E-value: 5.8e-07
   EF-hand_6   2 lreaFklfDkdgdGkidaeElrkalr 27 
                 +r+aF+ +D d++G+++aeEl +a+ 
  KOO24918.1 208 MRKAFQDIDLDHSGSLSAEELWQAFD 233
                 89*******************99986 PP

  == domain 4  score: 17.4 bits;  conditional E-value: 2.4e-06
   EF-hand_6   4 eaFklfDkdgdGkidaeElrkalr 27 
                 ++  + Dkdg+G i++eE+++al 
  KOO24918.1 246 ALITACDKDGNGNISYEEFVDALA 269
                 555789****************97 PP

>> EF-hand_5  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   0.0   1.3e-05     0.015       2      23 ..      66      86 ..      65      88 .. 0.88
   2 !   11.8   0.0   0.00011      0.13       9      23 ..     108     122 ..     100     124 .. 0.86
   3 !   23.5   0.0   2.1e-08   2.5e-05       2      23 ..     209     230 ..     208     232 .. 0.89
   4 !   12.1   0.0   8.5e-05       0.1       9      21 ..     252     264 ..     244     269 .. 0.86

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 1.3e-05
                HHHHHHH-SS-SSCE-HHHHHH CS
   EF-hand_5  2 kdtFqaiDlNgDGkIskeELkt 23
                k+ Fq +Dl+++G ++  EL +
  KOO24918.1 66 KA-FQSMDLDRSGSLNEKELAR 86
                55.****************976 PP

  == domain 2  score: 11.8 bits;  conditional E-value: 0.00011
                 -SS-SSCE-HHHHHH CS
   EF-hand_5   9 DlNgDGkIskeELkt 23 
                 D +gDG+++  E+  
  KOO24918.1 108 DRDGDGQVDYKEFVD 122
                 9***********965 PP

  == domain 3  score: 23.5 bits;  conditional E-value: 2.1e-08
                 HHHHHHH-SS-SSCE-HHHHHH CS
   EF-hand_5   2 kdtFqaiDlNgDGkIskeELkt 23 
                 +++Fq iDl+++G +s+eEL++
  KOO24918.1 209 RKAFQDIDLDHSGSLSAEELWQ 230
                 788*****************76 PP

  == domain 4  score: 12.1 bits;  conditional E-value: 8.5e-05
                 -SS-SSCE-HHHH CS
   EF-hand_5   9 DlNgDGkIskeEL 21 
                 D++g G Is eE+
  KOO24918.1 252 DKDGNGNISYEEF 264
                 ************9 PP

>> EF-hand_8  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.6   0.0     0.006       7.1      32      51 ..      68      87 ..      63      91 .. 0.85
   2 !   20.9   0.1     2e-07   0.00024      10      54 ..      84     126 ..      82     127 .. 0.83
   3 ?    4.4   0.0     0.028        33      32      53 ..     212     233 ..     208     235 .. 0.83
   4 !   24.4   0.0   1.7e-08     2e-05       1      54 [.     219     270 ..     219     271 .. 0.94

  Alignments for each domain:
  == domain 1  score: 6.6 bits;  conditional E-value: 0.006
   EF-hand_8 32 frefDtdgdGkisfeEFcvl 51
                f  +D+d++G ++ +E    
  KOO24918.1 68 FQSMDLDRSGSLNEKELARA 87
                6779************8765 PP

  == domain 2  score: 20.9 bits;  conditional E-value: 2e-07
   EF-hand_8  10 lrrilrilglkkglseeevdilfrefDtdgdGkisfeEFcvller 54 
                 l r+l +l ++  +   ++++l+ + D+dgdG ++++EF+++l+r
  KOO24918.1  84 LARALDLLNIP--IDRPKLRELILCCDRDGDGQVDYKEFVDVLAR 126
                 66666667777..77778999*******************99876 PP

  == domain 3  score: 4.4 bits;  conditional E-value: 0.028
   EF-hand_8  32 frefDtdgdGkisfeEFcvlle 53 
                 f  +D+d++G +s eE  + + 
  KOO24918.1 212 FQDIDLDHSGSLSAEELWQAFD 233
                 6679***********9877665 PP

  == domain 4  score: 24.4 bits;  conditional E-value: 1.7e-08
   EF-hand_8   1 ekgkItreelrrilrilglkkglseeevdilfrefDtdgdGkisfeEFcvller 54 
                 ++g+++ eel  +   l l+  l  + + +l+ + D dg+G is+eEF++ l+r
  KOO24918.1 219 HSGSLSAEELWQAFDRLNLQ--LDRHSFKALITACDKDGNGNISYEEFVDALAR 270
                 6899********99888***..***************************99876 PP

>> SPARC_Ca_bdg  Secreted protein acidic and rich in cysteine Ca binding region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.6   0.0   2.6e-05     0.031      29     111 ..      36     121 ..      24     123 .. 0.65
   2 !   20.1   0.5   5.1e-07   0.00061      35     111 ..     187     265 ..     157     267 .. 0.75

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 2.6e-05
  SPARC_Ca_bdg  29 ereeekehleelekkeeek.nlkeckepvawkFsklDtnsdkvlsksELap.lraplvklehC.ikpflescDadkdkkislkEwc 111
                   er+e+k++ ++++   + +  +++   ++   F+++D ++ ++l+++ELa  l +  +++++   ++++  cD d d++++ kE++
    KOO24918.1  36 ERAEKKKNIKKTAFVMQVSeAVNAKFGNMFKAFQSMDLDRSGSLNEKELARaLDLLNIPIDRPkLRELILCCDRDGDGQVDYKEFV 121
                   33333333333322222220223333334446899**************8625555578876527899****************97 PP

  == domain 2  score: 20.1 bits;  conditional E-value: 5.1e-07
  SPARC_Ca_bdg  35 ehleelekkeeeknlkeckepvawkFsklDtnsdkvlsksELapl..raplvklehCikpflescDadkdkkislkEwc 111
                   + +++ + k+ +++l++  ++++  F+++D ++ ++ls +EL +   r++l    h  k+++++cD d +++is +E++
    KOO24918.1 187 KVSSASMVKQASDSLNAKFTNMRKAFQDIDLDHSGSLSAEELWQAfdRLNLQLDRHSFKALITACDKDGNGNISYEEFV 265
                   3455555666666777777788899*****************876335566777899********************97 PP

>> EF-hand_10  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.1   0.0      0.15   1.8e+02      26      45 ..      67      86 ..      65      91 .. 0.83
   2 !    8.8   0.0    0.0012       1.5       3      44 ..      80     121 ..      78     125 .. 0.93
   3 ?    1.3   0.0      0.26   3.1e+02      25      45 ..     210     230 ..     208     235 .. 0.81
   4 !    6.9   0.1    0.0047       5.6       2      44 ..     223     265 ..     222     268 .. 0.90

  Alignments for each domain:
  == domain 1  score: 2.1 bits;  conditional E-value: 0.15
  EF-hand_10 26 LFkkcDkSksgrLegeEiee 45
                 F+  D  +sg+L+++E+  
  KOO24918.1 67 AFQSMDLDRSGSLNEKELAR 86
                59999************876 PP

  == domain 2  score: 8.8 bits;  conditional E-value: 0.0012
  EF-hand_10   3 sfkEvkrlLreiNievddeYAekLFkkcDkSksgrLegeEie 44 
                 + kE+ r L ++Ni +d    ++L   cD+  +g+ + +E++
  KOO24918.1  80 NEKELARALDLLNIPIDRPKLRELILCCDRDGDGQVDYKEFV 121
                 669**********************************99986 PP

  == domain 3  score: 1.3 bits;  conditional E-value: 0.26
  EF-hand_10  25 kLFkkcDkSksgrLegeEiee 45 
                 k F+  D  +sg+L  eE+ +
  KOO24918.1 210 KAFQDIDLDHSGSLSAEELWQ 230
                 669999*9*******999855 PP

  == domain 4  score: 6.9 bits;  conditional E-value: 0.0047
  EF-hand_10   2 msfkEvkrlLreiNievddeYAekLFkkcDkSksgrLegeEie 44 
                 +s +E+ +    +N+++d +  + L   cDk  +g +  eE++
  KOO24918.1 223 LSAEELWQAFDRLNLQLDRHSFKALITACDKDGNGNISYEEFV 265
                 577888888899************************9999985 PP

>> DUF5580  Family of unknown function (DUF5580)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.0   0.2   2.3e-05     0.027     202     392 ..      68     275 ..      51     309 .. 0.62

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 2.3e-05
     DUF5580 202 LkilDPissGfllqsqlsrlflrhevPLqlPtvklLcqrFsrkgspelvnyeklLlfLke......aa.sdelqqsktvvdsnpkkt....esssdeks 289
                  +++D + sG l   +l+r +   ++P++ P ++ L+   + ++    v y++++  L +      a+ +++ q  +++  + + k+    ++ ++ k+
  KOO24918.1  68 FQSMDLDRSGSLNEKELARALDLLNIPIDRPKLRELILC-CDRDGDGQVDYKEFVDVLARdtvtlaAMgKRDMQALEAMGVADLDKEflghKTFKNVKA 165
                 566666667777777777666666677777766644332.33444445555555555433111111111233333222222222221011011222222 PP

     DUF5580 290 tapqdsssesevnk....sllei.Lkmalktakgklnl..enLnlsFrkeDrsfsGlLpppkvraiCgkhglyltlslletllnhqdlgyqdeikWqnf 381
                 t ++  +     ++       ++  ++ +k+a++ ln    n++ +F++ D   sG L+ +++    ++  l l    + +l+   d   +++i +++f
  KOO24918.1 166 TINESFDLAMARDEkedpAASKVsSASMVKQASDSLNAkfTNMRKAFQDIDLDHSGSLSAEELWQAFDRLNLQLDRHSFKALITACDKDGNGNISYEEF 264
                 222222211111111111112220234467777777752269999****************************************************** PP

     DUF5580 382 velLsrassdl 392
                 v+ L r    l
  KOO24918.1 265 VDALARDTVTL 275
                 ****9977654 PP

>> EF-hand_4  Cytoskeletal-regulatory complex EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.6   0.0      0.45   5.4e+02      23      69 ..      39      88 ..      32      93 .. 0.66
   2 !    9.2   0.1   0.00093       1.1      16      66 ..      68     121 ..      51     133 .. 0.71
   3 ?   -0.6   0.1         1   1.2e+03      43      65 ..     206     228 ..     165     236 .. 0.65
   4 ?    4.3   0.0     0.031        37      37      67 ..     236     266 ..     218     271 .. 0.85

  Alignments for each domain:
  == domain 1  score: 0.6 bits;  conditional E-value: 0.45
   EF-hand_4 23 dnkltgdkvapvlknskleedkle...kiwdladidedgkldfeefciam 69
                ++k + +k a v++ s+  + k+    k ++  d+d  g+l+ +e++ a+
  KOO24918.1 39 EKKKNIKKTAFVMQVSEAVNAKFGnmfKAFQSMDLDRSGSLNEKELARAL 88
                55666677777787777776665511145567899999999988887665 PP

  == domain 2  score: 9.2 bits;  conditional E-value: 0.00093
   EF-hand_4  16 fsglk.pednkltgdkvapvlk..nskleedklekiwdladidedgkldfeefc 66 
                 f++++ +++  l+++++a  l   n  ++  kl ++   +d d dg++d++ef+
  KOO24918.1  68 FQSMDlDRSGSLNEKELARALDllNIPIDRPKLRELILCCDRDGDGQVDYKEFV 121
                 4444323345677777776654226777888999*******************8 PP

  == domain 3  score: -0.6 bits;  conditional E-value: 1
   EF-hand_4  43 dklekiwdladidedgkldfeef 65 
                  ++ k ++  d+d+ g+l  ee+
  KOO24918.1 206 TNMRKAFQDIDLDHSGSLSAEEL 228
                 34566666677788888888875 PP

  == domain 4  score: 4.3 bits;  conditional E-value: 0.031
   EF-hand_4  37 nskleedklekiwdladidedgkldfeefci 67 
                 n +l+ + ++ + + +d d +g++ +eef+ 
  KOO24918.1 236 NLQLDRHSFKALITACDKDGNGNISYEEFVD 266
                 5678888899999999*************85 PP

>> Sigma70_r1_1  Sigma-70 factor, region 1.1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.3   0.0     0.035        42      18      52 ..     113     148 ..      96     183 .. 0.83
   2 !    9.1   0.0    0.0011       1.3       4      52 ..     241     292 ..     238     309 .. 0.83

  Alignments for each domain:
  == domain 1  score: 4.3 bits;  conditional E-value: 0.035
                   SCEEHHHHHHHGCCSS--HHHHHHH.HHHHHCCT-E CS
  Sigma70_r1_1  18 GyLtyeEindaLpddeldseqiedi.iemLedmgId 52 
                   G++ y+E  d+L  d ++  ++ +  ++ Le+mg++
    KOO24918.1 113 GQVDYKEFVDVLARDTVTLAAMGKRdMQALEAMGVA 148
                   88***********99999999977549999999986 PP

  == domain 2  score: 9.1 bits;  conditional E-value: 0.0011
                   HHHHHHHHHHHHHHSC..EEHHHHHHHGCCSS--HHHHHHH.HHHHHCCT-E CS
  Sigma70_r1_1   4 kaavkeLikkgKkkGy..LtyeEindaLpddeldseqiedi.iemLedmgId 52 
                   + + k+Li+   k G+  ++yeE  daL  d ++  ++ +  ++ Le+mg++
    KOO24918.1 241 RHSFKALITACDKDGNgnISYEEFVDALARDTVTLAAMGKRdMQALEAMGVA 292
                   566788888888876666*************999999987549999999997 PP

>> Toprim_2  Toprim-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.0       4.3   5.2e+03      58      72 ..      28      42 ..       8      64 .. 0.61
   2 ?    7.8   0.1    0.0037       4.4      43      75 ..      98     131 ..      76     183 .. 0.84
   3 ?    6.5   0.5    0.0092        11      38      73 ..     238     273 ..     171     288 .. 0.86
   4 ?    0.5   0.0      0.68   8.1e+02       8      42 ..     271     305 ..     259     319 .] 0.58

  Alignments for each domain:
  == domain 1  score: -2.0 bits;  conditional E-value: 4.3
    Toprim_2 58 rkaakrlaellreag 72
                ++aa +++e++++++
  KOO24918.1 28 DRAAVTAKERAEKKK 42
                334444444443333 PP

  == domain 2  score: 7.8 bits;  conditional E-value: 0.0037
    Toprim_2  43 pe.kkvvlalDnDkaGrkaakrlaellreagvre 75 
                 p+ ++++l+ D D  G+   k+++++l  ++v+ 
  KOO24918.1  98 PKlRELILCCDRDGDGQVDYKEFVDVLARDTVTL 131
                 34479******************99998776544 PP

  == domain 3  score: 6.5 bits;  conditional E-value: 0.0092
    Toprim_2  38 llerypekkvvlalDnDkaGrkaakrlaellreagv 73 
                 +l+r++ k ++ a D+D  G+   +++++ l  ++v
  KOO24918.1 238 QLDRHSFKALITACDKDGNGNISYEEFVDALARDTV 273
                 588997799************999999998876664 PP

  == domain 4  score: 0.5 bits;  conditional E-value: 0.68
    Toprim_2   8 DalSlaqlgikektnvvalgGt.alteaalkllery 42 
                 D   la++g++ +++++  +G+ +l ++ l + ++ 
  KOO24918.1 271 DTVTLAAMGKR-DMQALEAMGVaNLDKEFLGFNRKI 305
                 44445555554.888899999956666555554444 PP

>> PMBR  Pseudomurein-binding repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.6   0.0      0.62   7.4e+02       2      16 ..     112     126 ..     111     126 .. 0.88
   2 ?   -2.6   0.0       6.6   7.8e+03       2      16 ..     220     234 ..     220     236 .. 0.79
   3 ?    9.1   0.0    0.0013       1.5       1      16 [.     255     270 ..     255     270 .. 0.92

  Alignments for each domain:
  == domain 1  score: 0.6 bits;  conditional E-value: 0.62
        PMBR   2 sgkisyeeyldmasr 16 
                 +g + y e++d+++r
  KOO24918.1 112 DGQVDYKEFVDVLAR 126
                 68899*******998 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 6.6
        PMBR   2 sgkisyeeyldmasr 16 
                 sg++s ee+ +++ r
  KOO24918.1 220 SGSLSAEELWQAFDR 234
                 799****99777755 PP

  == domain 3  score: 9.1 bits;  conditional E-value: 0.0013
        PMBR   1 gsgkisyeeyldmasr 16 
                 g+g isyee++d+++r
  KOO24918.1 255 GNGNISYEEFVDALAR 270
                 589**********998 PP

>> Toprim_4  Toprim domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.0       8.5     1e+04      64      76 ..      28      40 ..      16      54 .. 0.53
   2 ?    8.0   0.0    0.0033         4      48      69 ..      91     115 ..      66     131 .. 0.75
   3 ?    1.9   0.0      0.26   3.1e+02      49      78 ..     233     268 ..     209     276 .. 0.69
   4 ?   -2.4   0.0       5.6   6.7e+03       8      22 ..     279     293 ..     279     294 .. 0.86

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 8.5
    Toprim_4 64 DaeGeataerlae 76
                D +  ++ er+ +
  KOO24918.1 28 DRAAVTAKERAEK 40
                3333333333333 PP

  == domain 2  score: 8.0 bits;  conditional E-value: 0.0033
    Toprim_4  48 ve...aekkvkevilaldgDaeGea 69 
                 ++    + k++e+il+ d D++G+ 
  KOO24918.1  91 LNipiDRPKLRELILCCDRDGDGQV 115
                 2255678999*************96 PP

  == domain 3  score: 1.9 bits;  conditional E-value: 0.26
    Toprim_4  49 e......aekkvkevilaldgDaeGeataerlaell 78 
                 +       ++++k +i a d D+ G+   e+ +++l
  KOO24918.1 233 DrlnlqlDRHSFKALITACDKDGNGNISYEEFVDAL 268
                 235555677889999999999999987777766655 PP

  == domain 4  score: -2.4 bits;  conditional E-value: 5.6
    Toprim_4   8 gyaDvlalekagikn 22 
                 g  D+ ale +g+ n
  KOO24918.1 279 GKRDMQALEAMGVAN 293
                 6789******99987 PP

>> Transcript_VP30  Ebola virus-specific transcription factor VP30
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.0       4.7   5.6e+03      64      81 ..      62      79 ..      27      88 .. 0.69
   2 ?   -1.0   0.0       1.4   1.7e+03      27      69 ..     126     166 ..     114     177 .. 0.72
   3 ?    9.8   0.0   0.00066      0.79      65      97 ..     207     240 ..     184     267 .. 0.80
   4 ?   -2.2   0.0       3.3   3.9e+03      27      59 ..     270     300 ..     245     313 .. 0.69

  Alignments for each domain:
  == domain 1  score: -2.7 bits;  conditional E-value: 4.7
                     HHHHHHHHHHHC-STTHH CS
  Transcript_VP30 64 evvkevytrlhldkGGsf 81
                     + + ++++ + ld+ Gs+
       KOO24918.1 62 GNMFKAFQSMDLDRSGSL 79
                     455566777777777765 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 1.4
                      HHHHHHHHHHHCCS-GGGHHHHHHHHHHHHT--GGGHHHHHHH CS
  Transcript_VP30  27 rallsltavgirktsksllslltelhlrrenlgqdqaevvkev 69 
                      r  ++l+a+g r  +   l+ +    l +e lg    + vk +
       KOO24918.1 126 RDTVTLAAMGKR--DMQALEAMGVADLDKEFLGHKTFKNVKAT 166
                      555566665555..55678889999999999988877777665 PP

  == domain 3  score: 9.8 bits;  conditional E-value: 0.00066
                      HHHHHHHHHHC-STTHHHH.HHHHHS-HHHHHHH CS
  Transcript_VP30  65 vvkevytrlhldkGGsfea.alwqqwdkrslilf 97 
                       ++++++ + ld  Gs+ a  lwq +d+  l l 
       KOO24918.1 207 NMRKAFQDIDLDHSGSLSAeELWQAFDRLNLQLD 240
                      57889************9945*******988775 PP

  == domain 4  score: -2.2 bits;  conditional E-value: 3.3
                      HHHHHHHHHHHCCS-GGGHHHHHHHHHHHHT-- CS
  Transcript_VP30  27 rallsltavgirktsksllslltelhlrrenlg 59 
                      r  ++l+a+g r      l+ +    l +e lg
       KOO24918.1 270 RDTVTLAAMGKRD--MQALEAMGVANLDKEFLG 300
                      5555666555554..446777777777777766 PP

>> GLTSCR1  Conserved region of unknown function on GLTSCR protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.4   0.1     0.042        50      35      82 ..      39      85 ..      30     103 .. 0.74
   2 ?    6.8   0.2    0.0077       9.2      35      98 ..     181     245 ..     166     249 .. 0.78

  Alignments for each domain:
  == domain 1  score: 4.4 bits;  conditional E-value: 0.042
     GLTSCR1 35 edeedlekadeefekvaeellkrfqklenkfrklllkeakrespseee 82
                e+++++ k+   + +v+e + ++f ++++ f+ + l ++ + +++e +
  KOO24918.1 39 EKKKNI-KKTAFVMQVSEAVNAKFGNMFKAFQSMDLDRSGSLNEKELA 85
                333333.4567888999999**************99999888877765 PP

  == domain 2  score: 6.8 bits;  conditional E-value: 0.0077
     GLTSCR1  35 edeedle.kadeefekvaeellkrfqklenkfrklllkeakrespseeevmlerllleeerrele 98 
                 ed    +  + +++++++++l ++f+++ + f+ + l ++ + s  e     +rl l+ +r +++
  KOO24918.1 181 EDPAASKvSSASMVKQASDSLNAKFTNMRKAFQDIDLDHSGSLSAEELWQAFDRLNLQLDRHSFK 245
                 3333333344889999***********************99888888777888888888777665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (319 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1038  (0.057895); expected 358.6 (0.02)
Passed bias filter:                      537  (0.0299515); expected 358.6 (0.02)
Passed Vit filter:                        47  (0.00262145); expected 17.9 (0.001)
Passed Fwd filter:                        15  (0.000836633); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              15  [number of targets reported over threshold]
# CPU time: 0.53u 0.25s 00:00:00.78 Elapsed: 00:00:00.42
# Mc/sec: 2301.14
//
Query:       KOO24919.1  [L=592]
Description: hypothetical protein Ctob_004508 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    5.5e-11   42.7   0.1      3e-08   33.8   0.0    2.3  2  Peptidase_C48  Ulp1 protease family, C-terminal catalytic dom


Domain annotation for each model (and alignments):
>> Peptidase_C48  Ulp1 protease family, C-terminal catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.5   0.1   0.00036       6.4      22      48 ..     123     149 ..      94     174 .. 0.66
   2 !   33.8   0.0   1.7e-12     3e-08     148     187 ..     458     497 ..     446     525 .. 0.83

  Alignments for each domain:
  == domain 1  score: 6.5 bits;  conditional E-value: 0.00036
                    CCCTCCCEEE--THHHHHHC....... CS
  Peptidase_C48  22 seskaervhflntffvskLtkavkdfk 48 
                    +e+++ +vh+++ ff+++L++ +++  
     KOO24919.1 123 DEKSRSHVHMFSAFFLKRLKTTITKGL 149
                    78999***************7666544 PP

  == domain 2  score: 33.8 bits;  conditional E-value: 1.7e-12
                    .GGGEEEEEEE-----SSCCCHHHHHHHHHHHHHCTHHCH CS
  Peptidase_C48 148 dltpfeierltkvpqqknsgDCGiyvlkfiellaegapqe 187
                    + +++ ++ l+kvpqqkn++DCG+y+l+fie la   +  
     KOO24919.1 458 STERMPNIILKKVPQQKNDYDCGLYMLTFIEQLAAAEELP 497
                    5677788999*********************999876655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (592 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       828  (0.0461822); expected 358.6 (0.02)
Passed bias filter:                      407  (0.0227007); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.58u 0.26s 00:00:00.84 Elapsed: 00:00:00.41
# Mc/sec: 4310.24
//
Query:       KOO24920.1  [L=819]
Description: hypothetical protein Ctob_006800 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    4.4e-20   71.0  31.7     0.0015   18.5   0.1    8.7 10  Arm             Armadillo/beta-catenin-like repeat
    1.4e-09   38.3   2.0    3.6e-05   24.2   0.1    2.7  2  Ank_4           Ankyrin repeats (many copies)
    4.6e-08   33.5   2.8      5e-08   33.4   0.4    2.2  2  Ank_2           Ankyrin repeats (3 copies)
    1.5e-06   28.4   0.8    4.7e-06   26.8   0.8    1.9  1  Ank_5           Ankyrin repeats (many copies)
    0.00029   21.1   4.0     0.0095   16.4   0.4    3.3  3  Ank             Ankyrin repeat
    0.00088   19.6   1.2       0.11   13.1   0.1    3.8  3  Ank_3           Ankyrin repeat
  ------ inclusion threshold ------
      0.021   15.7   2.3      0.056   14.3   2.3    1.7  1  Nucleoporin_FG  Nucleoporin FG repeat region
       0.15   12.4   8.7        6.4    7.3   0.0    6.2  7  HEAT            HEAT repeat


Domain annotation for each model (and alignments):
>> Arm  Armadillo/beta-catenin-like repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.3       3.2   7.3e+03      32      40 ..       6      14 ..       5      15 .. 0.83
   2 ?   -2.7   0.3       3.2   7.3e+03      32      40 ..      26      34 ..      25      35 .. 0.83
   3 ?   -1.3   0.1       1.2   2.6e+03      30      40 ..      44      54 ..      44      55 .. 0.84
   4 !   12.5   0.0   5.3e-05      0.12       2      41 .]     408     447 ..     407     447 .. 0.93
   5 !   18.5   0.1   6.8e-07    0.0015       1      40 [.     448     487 ..     448     488 .. 0.96
   6 !   15.6   0.2   5.5e-06     0.012       2      40 ..     491     529 ..     490     530 .. 0.95
   7 !   11.3   0.2   0.00013      0.28       5      40 ..     536     571 ..     532     572 .. 0.93
   8 !    8.1   0.1    0.0013       2.8       2      36 ..     575     609 ..     574     610 .. 0.93
   9 !   16.7   0.1   2.4e-06    0.0055       6      40 ..     601     635 ..     598     636 .. 0.94
  10 !   12.1   0.0   7.1e-05      0.16       3      36 ..     640     673 ..     638     675 .. 0.92

  Alignments for each domain:
  == domain 1  score: -2.7 bits;  conditional E-value: 3.2
                HHHHHHHHT CS
         Arm 32 AawALsNLa 40
                Aa+ALs L+
  KOO24920.1  6 AAGALSVLT 14
                99***9887 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 3.2
                HHHHHHHHT CS
         Arm 32 AawALsNLa 40
                Aa+ALs L+
  KOO24920.1 26 AAGALSVLT 34
                99***9887 PP

  == domain 3  score: -1.3 bits;  conditional E-value: 1.2
                HHHHHHHHHHT CS
         Arm 30 eeAawALsNLa 40
                e Aa+ALs L+
  KOO24920.1 44 ETAAGALSVLT 54
                679*****887 PP

  == domain 4  score: 12.5 bits;  conditional E-value: 5.3e-05
                 HHHHHHHHHTTHHHHHHHHTTTSSHHHHHHHHHHHHHHTT CS
         Arm   2 senkdavieaGavppLvrLLssedeevqeeAawALsNLaa 41 
                 ++ ++a+  aG+ ppLv++L ++  e + +Aa AL+ L++
  KOO24920.1 408 DPMREALAAAGVFPPLVAMLGDGTAEERAAAAEALWKLSR 447
                 57899******************99999*****9999986 PP

  == domain 5  score: 18.5 bits;  conditional E-value: 6.8e-07
                 SHHHHHHHHHTTHHHHHHHHTTTSSHHHHHHHHHHHHHHT CS
         Arm   1 nsenkdavieaGavppLvrLLssedeevqeeAawALsNLa 40 
                 n+ nk a+  aGa+ pL +L +++d + + +Aa+ L++L+
  KOO24920.1 448 NDANKAAIAAAGAIVPLAALVRDGDAKGKANAAAVLGYLS 487
                 688************************************8 PP

  == domain 6  score: 15.6 bits;  conditional E-value: 5.5e-06
                 HHHHHHHHHTTHHHHHHHHTTTSSHHHHHHHHHHHHHHT CS
         Arm   2 senkdavieaGavppLvrLLssedeevqeeAawALsNLa 40 
                   nk a+  aGa+ pL +L +++d + +  Aa AL+NL+
  KOO24920.1 491 AANKAAIAAAGAIVPLAALVRDGDAQGKAYAAHALGNLS 529
                 679***********************************8 PP

  == domain 7  score: 11.3 bits;  conditional E-value: 0.00013
                 HHHHHHTTHHHHHHHHTTTSSHHHHHHHHHHHHHHT CS
         Arm   5 kdavieaGavppLvrLLssedeevqeeAawALsNLa 40 
                 + a+  aGa+ pL +L +++d + +  Aa AL+NL+
  KOO24920.1 536 TAAIAAAGAIVPLAALVRDGDAQGKAYAAHALGNLS 571
                 578999*****************************8 PP

  == domain 8  score: 8.1 bits;  conditional E-value: 0.0013
                 HHHHHHHHHTTHHHHHHHHTTTSSHHHHHHHHHHH CS
         Arm   2 senkdavieaGavppLvrLLssedeevqeeAawAL 36 
                   n+ a+  aGa+ pL +L +++d +   +Aa+A+
  KOO24920.1 575 AANTAAIAAAGAIVPLAALVRDGDAQAAIAAAGAI 609
                 5799****************************997 PP

  == domain 9  score: 16.7 bits;  conditional E-value: 2.4e-06
                 HHHHHTTHHHHHHHHTTTSSHHHHHHHHHHHHHHT CS
         Arm   6 davieaGavppLvrLLssedeevqeeAawALsNLa 40 
                  a+  aGa+ pL +L +++d e ++ Aa AL+NL+
  KOO24920.1 601 AAIAAAGAIVPLAALVRDGDAEGKRYAALALGNLS 635
                 57889*****************************8 PP

  == domain 10  score: 12.1 bits;  conditional E-value: 7.1e-05
                 HHHHHHHHTTHHHHHHHHTTTSSHHHHHHHHHHH CS
         Arm   3 enkdavieaGavppLvrLLssedeevqeeAawAL 36 
                  n  a++ aGav+ L +L++++d + +e+Aa+A+
  KOO24920.1 640 ANEAAMVAAGAVESLKALMRDGDAKGKEAAARAI 673
                 577899**************************98 PP

>> Ank_4  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.6   0.2   5.3e-08   0.00012       8      55 .]     101     147 ..     100     147 .. 0.96
   2 !   24.2   0.1   1.6e-08   3.6e-05       4      44 ..     130     169 ..     129     172 .. 0.91

  Alignments for each domain:
  == domain 1  score: 22.6 bits;  conditional E-value: 5.3e-08
       Ank_4   8 aaisgrlelvrlLlekgadinaqdnrsGetalhiAakrgnveilklLl 55 
                 aa +g++ ++++ +e gad+n   n++G  +l  Aa   nve++ lLl
  KOO24920.1 101 AALAGDVAALQSAIEAGADVNSA-NDRGAHPLMLAAHDANVECVSLLL 147
                 7889******************8.**********************98 PP

  == domain 2  score: 24.2 bits;  conditional E-value: 1.6e-08
       Ank_4   4 aLhyaaisgrlelvrlLlekgadinaqdnrsGetalhiAak 44 
                 +L  aa++ ++e+v lLl++gad ++   r G+talh A  
  KOO24920.1 130 PLMLAAHDANVECVSLLLQSGADAHRA-TRKGRTALHVATT 169
                 6778999****************9997.*********9965 PP

>> Ank_2  Ankyrin repeats (3 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.4   0.4   2.2e-11     5e-08       4      62 ..     101     169 ..      98     175 .. 0.84
   2 ?   -1.4   0.1       1.6   3.6e+03      28      61 ..     642     673 ..     612     679 .. 0.63

  Alignments for each domain:
  == domain 1  score: 33.4 bits;  conditional E-value: 2.2e-11
       Ank_2   4 AakngnlelvklLl.egadpn..k.ngktaLhyAakngnleivklLleh......adndgrtpLhyAar 62 
                 Aa+ g+  +++  + +gad+n  +  g  +L++Aa+  n+e+v+lLl+       a+++grt+Lh+A  
  KOO24920.1 101 AALAGDVAALQSAIeAGADVNsaNdRGAHPLMLAAHDANVECVSLLLQSgadahrATRKGRTALHVATT 169
                 7888877888888999****98637**********************955444466699********85 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 1.6
       Ank_2  28 taLhyAakngnleivklLlehadndgrtpLhyAa 61 
                  a ++Aa +   e +k+L+   d +g+ +   A+
  KOO24920.1 642 EAAMVAAGAV--ESLKALMRDGDAKGKEAAARAI 673
                 4555555443..6666666554555665555555 PP

>> Ank_5  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.8   0.8   2.1e-09   4.7e-06       2      56 .]     114     167 ..     113     167 .. 0.97

  Alignments for each domain:
  == domain 1  score: 26.8 bits;  conditional E-value: 2.1e-09
       Ank_5   2 lehgpadvnrldgggntpLhvAakygaadvvrlLlargadlnltdsrGltaldlA 56 
                 +e+g advn  + +g +pL++Aa+  + ++v lLl  gad+   +  G+tal++A
  KOO24920.1 114 IEAG-ADVNSANDRGAHPLMLAAHDANVECVSLLLQSGADAHRATRKGRTALHVA 167
                 5788.************************************************98 PP

>> Ank  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.1       5.1   1.1e+04      23      31 ..     116     124 ..     108     125 .. 0.78
   2 !   16.4   0.4   4.2e-06    0.0095       4      26 ..     129     152 ..     126     157 .. 0.87
   3 ?    4.6   0.0     0.022        48       2      11 ..     160     169 ..     159     212 .. 0.72

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 5.1
                 TTTSTTCBT CS
         Ank  23 hGAnlnald 31 
                  GA++n+ +
  KOO24920.1 116 AGADVNSAN 124
                 59***9876 PP

  == domain 2  score: 16.4 bits;  conditional E-value: 4.2e-06
                 BHHHHHHHHTTHHHHHHHH.TTTS CS
         Ank   4 TPLHlAatngkkriiklLL.hGAn 26 
                  PL+lAa+ +++++++lLL +GA+
  KOO24920.1 129 HPLMLAAHDANVECVSLLLqSGAD 152
                 6******9999********77998 PP

  == domain 3  score: 4.6 bits;  conditional E-value: 0.022
                 SBBHHHHHHH CS
         Ank   2 GnTPLHlAat 11 
                 G+T+LH+A t
  KOO24920.1 160 GRTALHVATT 169
                 9******852 PP

>> Ank_3  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.1   0.0      0.41   9.2e+02       9      30 ..     101     121 ..     101     122 .. 0.93
   2 !   13.1   0.1     5e-05      0.11       2      30 ..     127     154 ..     126     155 .. 0.92
   3 ?    1.3   0.0      0.35   7.8e+02       2       9 ..     160     167 ..     159     174 .. 0.87

  Alignments for each domain:
  == domain 1  score: 1.1 bits;  conditional E-value: 0.41
       Ank_3   9 AarsgnleivkfLlenkgadvn 30 
                 Aa++g+++ ++  +e  gadvn
  KOO24920.1 101 AALAGDVAALQSAIE-AGADVN 121
                 899999999******.9****9 PP

  == domain 2  score: 13.1 bits;  conditional E-value: 5e-05
       Ank_3   2 GetpLhlAarsgnleivkfLlenkgadvn 30 
                 G  pL+lAa+ +n+e v +Ll+  gad +
  KOO24920.1 127 GAHPLMLAAHDANVECVSLLLQ-SGADAH 154
                 789*******************.8*9975 PP

  == domain 3  score: 1.3 bits;  conditional E-value: 0.35
       Ank_3   2 GetpLhlA 9  
                 G+t+Lh+A
  KOO24920.1 160 GRTALHVA 167
                 9*****99 PP

>> Nucleoporin_FG  Nucleoporin FG repeat region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   2.3   2.5e-05     0.056       6      68 ..     743     804 ..     733     812 .. 0.83

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 2.5e-05
  Nucleoporin_FG   6 aatstsgglFGststt....atstgglFGasstatatasggglfgatsqtaasgglFGstnattqtt 68 
                     aa+++sg  FG+++ +    +++t++ FG  ++ +a++  + l g+   +aa+ + FG+ + ++++ 
      KOO24920.1 743 AAAASSGFSFGGANPApalaPAPTTSPFG--APRAAPPPPA-LIGS--PEAATASSFGAIAPSASPP 804
                     677889999999999999999999999**..7888888888.9999..7899999999988877765 PP

>> HEAT  HEAT repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.3   0.0    0.0029       6.4       2      28 ..     420     446 ..     419     448 .. 0.85
   2 ?   -2.0   0.0       2.9   6.4e+03       6      27 ..     465     486 ..     461     487 .. 0.79
   3 ?   -0.5   0.0      0.96   2.2e+03       6      27 ..     507     528 ..     503     530 .. 0.80
   4 ?    0.3   0.0      0.53   1.2e+03       6      28 ..     549     571 ..     545     573 .. 0.80
   5 ?    2.2   0.0      0.12   2.8e+02       5      28 ..     612     635 ..     609     637 .. 0.82
   6 ?    0.4   0.0      0.46     1e+03       5      24 ..     654     673 ..     650     675 .. 0.83
   7 ?   -2.3   0.1       3.6   8.1e+03      19      29 ..     789     799 ..     788     800 .. 0.86

  Alignments for each domain:
  == domain 1  score: 7.3 bits;  conditional E-value: 0.0029
                 HHHHHHHHT-SSHHHHHHHHHHHHHHH CS
        HEAT   2 lPlllkllsDpspeVReaAakaLgala 28 
                 +P+l+ +l D  +e R+aAa+aL +l+
  KOO24920.1 420 FPPLVAMLGDGTAEERAAAAEALWKLS 446
                 79********66666********8886 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 2.9
                 HHHHT-SSHHHHHHHHHHHHHH CS
        HEAT   6 lkllsDpspeVReaAakaLgal 27 
                   l +D +++  ++Aa  Lg l
  KOO24920.1 465 AALVRDGDAKGKANAAAVLGYL 486
                 6667999999999999999965 PP

  == domain 3  score: -0.5 bits;  conditional E-value: 0.96
                 HHHHT-SSHHHHHHHHHHHHHH CS
        HEAT   6 lkllsDpspeVReaAakaLgal 27 
                   l +D +++  + Aa aLg+l
  KOO24920.1 507 AALVRDGDAQGKAYAAHALGNL 528
                 56668888888999******98 PP

  == domain 4  score: 0.3 bits;  conditional E-value: 0.53
                 HHHHT-SSHHHHHHHHHHHHHHH CS
        HEAT   6 lkllsDpspeVReaAakaLgala 28 
                   l +D +++  + Aa aLg+l+
  KOO24920.1 549 AALVRDGDAQGKAYAAHALGNLS 571
                 56668888888999*******97 PP

  == domain 5  score: 2.2 bits;  conditional E-value: 0.12
                 HHHHHT-SSHHHHHHHHHHHHHHH CS
        HEAT   5 llkllsDpspeVReaAakaLgala 28 
                 l  l +D ++e  + Aa+aLg+l+
  KOO24920.1 612 LAALVRDGDAEGKRYAALALGNLS 635
                 466679999999999******997 PP

  == domain 6  score: 0.4 bits;  conditional E-value: 0.46
                 HHHHHT-SSHHHHHHHHHHH CS
        HEAT   5 llkllsDpspeVReaAakaL 24 
                 l  l++D +++  eaAa+a+
  KOO24920.1 654 LKALMRDGDAKGKEAAARAI 673
                 55667999*********998 PP

  == domain 7  score: -2.3 bits;  conditional E-value: 3.6
                 HHHHHHHHHHH CS
        HEAT  19 aAakaLgalae 29 
                 a+a ++ga+a+
  KOO24920.1 789 ATASSFGAIAP 799
                 8999*****97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (819 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       620  (0.0345808); expected 358.6 (0.02)
Passed bias filter:                      329  (0.0183502); expected 358.6 (0.02)
Passed Vit filter:                        52  (0.00290033); expected 17.9 (0.001)
Passed Fwd filter:                        13  (0.000725082); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.63u 0.31s 00:00:00.94 Elapsed: 00:00:00.45
# Mc/sec: 5495.62
//
Query:       KOO24921.1  [L=329]
Description: hypothetical protein Ctob_006801 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.4e-07   30.3   0.2    6.2e-07   29.4   0.2    1.4  1  SAM_2     SAM domain (Sterile alpha motif)
      3e-06   27.6   0.1    5.5e-06   26.7   0.1    1.4  1  SAM_1     SAM domain (Sterile alpha motif)
  ------ inclusion threshold ------
        3.7    6.3   8.1        6.8    5.5   8.1    1.3  1  Spc7      Spc7 kinetochore protein


Domain annotation for each model (and alignments):
>> SAM_2  SAM domain (Sterile alpha motif)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.4   0.2     1e-10   6.2e-07       6      61 ..      87     141 ..      84     143 .. 0.94

  Alignments for each domain:
  == domain 1  score: 29.4 bits;  conditional E-value: 1e-10
                 HHHHHHHHHHTTTGGGHHHHHHTTCSHHHHHTTSCHHHHHHTTHHHHHHHHHHHHH CS
       SAM_2   6 ledvaeWLrsiglkqytdnFrdagitgaelllrlteedLkrlGitsvghrkkilkk 61 
                  ed++  Lr+ gl +  ++F ++ i + + ++ lte+dLk+lG+ svg r+k+l +
  KOO24921.1  87 DEDLHTLLRRNGLDKLINIFVENDIETVKDVHLLTENDLKELGV-SVGLRRKLLEA 141
                 5788899999**********************************.********987 PP

>> SAM_1  SAM domain (Sterile alpha motif)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.7   0.1   9.2e-10   5.5e-06       5      60 ..      87     142 ..      84     144 .. 0.93

  Alignments for each domain:
  == domain 1  score: 26.7 bits;  conditional E-value: 9.2e-10
                 HSSHHHHHHHTTSGGGHHHH.HTTTSSHHHHTTSCHHHHHHCTTTSHHHHHHHHHHH CS
       SAM_1   5 vedVgeWLesiglgqYadlF.rageidgdaLlllteddLeklgvtllGHrkkIlyaI 60 
                  ed+   L+  gl + ++ F ++   +++ + llte+dL++lgv ++G r+k+l+a+
  KOO24921.1  87 DEDLHTLLRRNGLDKLINIFvENDIETVKDVHLLTENDLKELGV-SVGLRRKLLEAL 142
                 6899999*************************************.56*******997 PP

>> Spc7  Spc7 kinetochore protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.5   8.1    0.0011       6.8     187     269 ..       9      91 ..       3     102 .. 0.87

  Alignments for each domain:
  == domain 1  score: 5.5 bits;  conditional E-value: 0.0011
        Spc7 187 qeaaeelesidkeeLeelreelaelkaeieekkkelaelqeqleeleekieelkeqkseleeeiaeaervleeckgwsesevs 269
                    a e e+  +e L  +++el++++   +++++e ae +++le+++ +++ ++++ + +++++++a+    ++ + +++++ 
  KOO24921.1   9 AMTASEAEAAAREALLRAQQELSNASMIAQRRQAEAAEAEAELESKRLALTVAEDRLAAHRAALRQARTDALMNVQREDEDLH 91 
                 44677889999*******************************************************99877777666666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (329 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1367  (0.0762452); expected 358.6 (0.02)
Passed bias filter:                      605  (0.0337442); expected 358.6 (0.02)
Passed Vit filter:                        69  (0.00384851); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.53u 0.28s 00:00:00.81 Elapsed: 00:00:00.43
# Mc/sec: 2314.48
//
Query:       KOO24922.1  [L=335]
Description: vacuolar protein sorting-associated protein 72-like protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.4e-32  113.8  20.3    1.9e-32  113.4  20.3    1.1  1  YL1          YL1 nuclear protein
    3.3e-11   42.7   1.3      1e-10   41.2   0.1    2.1  2  YL1_C        YL1 nuclear protein C-terminal domain
  ------ inclusion threshold ------
      0.069   12.9   0.1       0.13   12.0   0.1    1.4  1  FGGY_C       FGGY family of carbohydrate kinases, C-terminal 
          5    5.9   8.8        6.7    5.5   8.8    1.1  1  Apt1         Golgi-body localisation protein domain


Domain annotation for each model (and alignments):
>> YL1  YL1 nuclear protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  113.4  20.3   4.1e-36   1.9e-32       4     244 .]      20     246 ..      18     246 .. 0.70

  Alignments for each domain:
  == domain 1  score: 113.4 bits;  conditional E-value: 4.1e-36
                 xxxxxxxxxxxxxxxxx.....xxxxxx..xxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxx RF
         YL1   4 RstAGnrlkkLleqeee.....edelel..lFaEeedDeefeseeeeeeee.nsDsdfdsdeedeesdeeedeeegekelerqerkkr..kkekkkrka 92 
                 R+  Gnr++kLl++e+      ++++++  ++a+ee D++f +++++e+   ++Dsdf +++e   s+++ede+e +k+++++  kk   +k +kk++ 
  KOO24922.1  20 RASKGNRMSKLLAEEAVdedaaDKDFYQqgFWADEEADDDFAGDADDEDGAdSFDSDFGESTE---SEDDEDEDEADKKVKQAPAKKSsaYKDPKKKAG 115
                 999*********8888754444445555****************9999876689999977776...444555556666665544444447777777763 PP

                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
         YL1  93 qkkkskkkkkkqkkkkkkkidpqakeprpkkkseraswlpaeslltpkrRkssRastvenkeqleerlkereerrkkilermrkkaarkkkkkkerplT 191
                  + +s + + + ++k++         ++ kk+ + +  +  e+    + R s R +t +++++ ee+ k+ e+  ++ +er  +  a+  +  + r+lT
  KOO24922.1 116 GAGASGAGQ-SGASKSN---------ASLKKRPRPEGDIVVEA----RSRGSLRGTTQASSAEAEENRKKLEAAAAARRERLDAMGAK--RGVELRRLT 198
                 333332222.2222222.........23344444444444433....36******************999999955555555544444..445569*** PP

                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxx RF
         YL1 192 QeerLaeAketEeeNlksLnryeeqEeekkkeqraklaalkrrkl.gpvirflS 244
                 Q+e LaeA++tE +N+ sL+r+++qEe+k++        +++r+  gp i+f+S
  KOO24922.1 199 QAEILAEAAQTEIINRASLERMLRQEEDKRRVL------VRERNAdGPRIKFHS 246
                 ******************************333......3344455*******9 PP

>> YL1_C  YL1 nuclear protein C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.0   0.1      0.17   7.8e+02      10      15 ..     106     111 ..     103     111 .. 0.81
   2 !   41.2   0.1   2.3e-14     1e-10       2      28 ..     281     307 ..     280     308 .. 0.97

  Alignments for each domain:
  == domain 1  score: -0.0 bits;  conditional E-value: 0.17
       YL1_C  10 kYrDPk 15 
                  Y+DPk
  KOO24922.1 106 AYKDPK 111
                 6****8 PP

  == domain 2  score: 41.2 bits;  conditional E-value: 2.3e-14
       YL1_C   2 CdITGlpAkYrDPkTgLpYanveaykv 28 
                 C++T  pAkY DP+T+ pYa++ea+k+
  KOO24922.1 281 CAVTQAPAKYLDPVTNQPYATLEAFKI 307
                 **************************8 PP

>> FGGY_C  FGGY family of carbohydrate kinases, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.1   2.9e-05      0.13     103     153 ..     146     197 ..     141     199 .. 0.93

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 2.9e-05
      FGGY_C 103 wdpdargtitglssstt.lahiarAaleavalqlrailealekdsgkpldrl 153
                 +++++rg+++g+++ ++  a+  r  lea a + r++l+a+ +++g++l+rl
  KOO24922.1 146 VEARSRGSLRGTTQASSaEAEENRKKLEAAAAARRERLDAMGAKRGVELRRL 197
                 57889************999**********************999****998 PP

>> Apt1  Golgi-body localisation protein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.5   8.8    0.0015       6.7     309     410 ..      81     216 ..      53     223 .. 0.48

  Alignments for each domain:
  == domain 1  score: 5.5 bits;  conditional E-value: 0.0015
        Apt1 309 vkess...seeddesdeesessssss.........ssssssassssssssrssslelrlkpt..........sstssssssessssssskkrsseessl 385
                 ++  s   ++ed+ +++ ++++             +++   a +s   +s++s+++ +lk++          ++++ s++ ++++ss  +++  ++++l
  KOO24922.1  81 TE--SeddEDEDEADKKVKQAP---AkkssaykdpKKKAGGAGASGAGQSGASKSNASLKKRprpegdivveARSRGSLRGTTQASSAEAEE--NRKKL 172
                 11..112122222222222222...1334677777444444444444444444444444432346788887633344433333333333332..33344 PP

        Apt1 386 essaservkssr.....................asddleemksRas 410
                 e  a  r   +r                     a+   +e+++Ras
  KOO24922.1 173 EAAAAARR--ERldamgakrgvelrrltqaeilAEAAQTEIINRAS 216
                 44333333..113334445566777788899999999999999998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (335 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1234  (0.068827); expected 358.6 (0.02)
Passed bias filter:                      475  (0.0264934); expected 358.6 (0.02)
Passed Vit filter:                        54  (0.00301188); expected 17.9 (0.001)
Passed Fwd filter:                        13  (0.000725082); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.55u 0.29s 00:00:00.84 Elapsed: 00:00:00.43
# Mc/sec: 2352.15
//
Query:       KOO24923.1  [L=678]
Description: hypothetical protein Ctob_006793 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.8e-25   85.9   0.9    2.3e-06   26.8   0.0    4.4  4  EF-hand_1   EF hand
    7.7e-23   78.4   2.8    1.1e-05   24.9   0.0    4.5  4  EF-hand_6   EF-hand domain
    1.7e-21   76.5   1.5    1.9e-09   37.8   0.3    2.4  2  EF-hand_7   EF-hand domain pair
      2e-19   69.2   1.4    4.7e-10   39.2   0.1    3.9  4  EF-hand_8   EF-hand domain pair
    2.7e-15   55.1   4.1     0.0011   18.4   0.1    4.4  4  EF-hand_5   EF hand
     0.0052   17.1   0.1        1.3    9.4   0.0    2.3  2  NADPH_Ox    Respiratory burst NADPH oxidase
     0.0065   16.3   1.9        1.8    8.5   0.1    3.6  4  EF-hand_10  EF hand
  ------ inclusion threshold ------
      0.025   14.5   0.1        6.2    6.7   0.0    3.5  4  Caleosin    Caleosin related protein
      0.044   12.3   0.8      0.067   11.7   0.8    1.2  1  Porin_5     Putative porin
      0.063   14.2  16.1       0.21   12.6   1.8    4.4  4  SHIPPO-rpt  Sperm-tail PG-rich repeat


Domain annotation for each model (and alignments):
>> EF-hand_1  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.1   0.0   1.7e-07   0.00031       3      28 ..     116     141 ..     114     142 .. 0.90
   2 !   26.8   0.0   1.3e-09   2.3e-06       1      28 [.     150     177 ..     150     178 .. 0.93
   3 !   19.3   0.0     3e-07   0.00054       2      27 ..     601     626 ..     600     628 .. 0.92
   4 !   15.4   0.0   5.4e-06    0.0097       4      23 ..     639     658 ..     636     659 .. 0.89

  Alignments for each domain:
  == domain 1  score: 20.1 bits;  conditional E-value: 1.7e-07
                 HHHHHHHTTTSSSEEEHHHHHHHHHH CS
   EF-hand_1   3 keiFrefDkDgdGkIdfeEfkellkk 28 
                  ++Fre D ++dG+I++ Ef   +++
  KOO24923.1 116 IDLFREWDENQDGRISKHEFSVGMAA 141
                 589*****************999986 PP

  == domain 2  score: 26.8 bits;  conditional E-value: 1.3e-09
                 HHHHHHHHHTTTSSSEEEHHHHHHHHHH CS
   EF-hand_1   1 elkeiFrefDkDgdGkIdfeEfkellkk 28 
                 e +e+F+efD Dg+G+I+++E+ +llk+
  KOO24923.1 150 EANELFDEFDPDGSGTIEYKELNQLLKR 177
                 5789*********************996 PP

  == domain 3  score: 19.3 bits;  conditional E-value: 3e-07
                 HHHHHHHHTTTSSSEEEHHHHHHHHH CS
   EF-hand_1   2 lkeiFrefDkDgdGkIdfeEfkellk 27 
                 +k++F e D+Dg+G++d  Ef ++l+
  KOO24923.1 601 VKDLFVEWDQDGSGTVDQREFHRALS 626
                 799*******************9997 PP

  == domain 4  score: 15.4 bits;  conditional E-value: 5.4e-06
                 HHHHHHTTTSSSEEEHHHHH CS
   EF-hand_1   4 eiFrefDkDgdGkIdfeEfk 23 
                  +F+ fD+Dg+G +++ E++
  KOO24923.1 639 GLFATFDRDGSGSVTYAEMQ 658
                 579***************97 PP

>> EF-hand_6  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.0   4.4e-06    0.0078       2      24 ..     115     137 ..     114     143 .. 0.84
   2 !   24.9   0.0   6.4e-09   1.1e-05       2      29 ..     151     180 ..     150     185 .. 0.87
   3 !   20.5   0.0   1.7e-07    0.0003       2      31 .]     601     629 ..     600     629 .. 0.92
   4 !   13.9   0.0   2.1e-05     0.038       5      24 ..     640     659 ..     637     662 .. 0.92

  Alignments for each domain:
  == domain 1  score: 16.1 bits;  conditional E-value: 4.4e-06
   EF-hand_6   2 lreaFklfDkdgdGkidaeElrk 24 
                 + ++F+++D + dG i+++E+  
  KOO24923.1 115 VIDLFREWDENQDGRISKHEFSV 137
                 5799****************965 PP

  == domain 2  score: 24.9 bits;  conditional E-value: 6.4e-09
   EF-hand_6   2 lreaFklfDkdgdGkidaeElrkalrk..a 29 
                  +e+F++fD dg+G+i ++El ++l++  +
  KOO24923.1 151 ANELFDEFDPDGSGTIEYKELNQLLKRrvE 180
                 689**********************97553 PP

  == domain 3  score: 20.5 bits;  conditional E-value: 1.7e-07
   EF-hand_6   2 lreaFklfDkdgdGkidaeElrkalrkalg 31 
                 ++++F ++D+dg+G++d+ E+ +al+ +lg
  KOO24923.1 601 VKDLFVEWDQDGSGTVDQREFHRALS-LLG 629
                 6899*********************9.776 PP

  == domain 4  score: 13.9 bits;  conditional E-value: 2.1e-05
   EF-hand_6   5 aFklfDkdgdGkidaeElrk 24 
                 +F  fD+dg+G+++++E+++
  KOO24923.1 640 LFATFDRDGSGSVTYAEMQR 659
                 79***************985 PP

>> EF-hand_7  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.8   0.3   1.1e-12   1.9e-09       6      70 ..     117     175 ..     112     176 .. 0.92
   2 !   37.6   0.1   1.3e-12   2.3e-09       3      68 ..     600     659 ..     599     661 .. 0.95

  Alignments for each domain:
  == domain 1  score: 37.8 bits;  conditional E-value: 1.1e-12
   EF-hand_7   6 eaFkelDtdgdgyldkeellrllrkifqgagegsklsdeelellfkefDtdkdGvisfdEFlkly 70 
                 + F+e D ++dg+++k e+   +         g ++s+ee  +lf+efD d++G+i + E+ +l 
  KOO24923.1 117 DLFREWDENQDGRISKHEFSVGMA------ALGIDVSKEEANELFDEFDPDGSGTIEYKELNQLL 175
                 78******************6666......9999**************************99975 PP

  == domain 2  score: 37.6 bits;  conditional E-value: 1.3e-12
   EF-hand_7   3 klkeaFkelDtdgdgyldkeellrllrkifqgagegsklsdeelellfkefDtdkdGvisfdEFlk 68 
                 ++k+ F e D+dg+g +d++e++r+l         g++ ++e+ + lf  fD d++G++++ E+++
  KOO24923.1 600 RVKDLFVEWDQDGSGTVDQREFHRALS------LLGVSATREQADGLFATFDRDGSGSVTYAEMQR 659
                 67899****************999999......******************************985 PP

>> EF-hand_8  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.5   0.0   2.6e-05     0.047      30      53 ..     117     140 ..     115     142 .. 0.92
   2 !   39.2   0.1   2.6e-13   4.7e-10       1      55 []     126     178 ..     126     178 .. 0.93
   3 !   11.6   0.0   0.00011      0.19      30      51 ..     603     624 ..     599     625 .. 0.88
   4 !   24.5   0.0     1e-08   1.8e-05       2      47 ..     613     656 ..     612     657 .. 0.95

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 2.6e-05
   EF-hand_8  30 ilfrefDtdgdGkisfeEFcvlle 53 
                 +lfre D+++dG+is+ EF v ++
  KOO24923.1 117 DLFREWDENQDGRISKHEFSVGMA 140
                 69*****************99886 PP

  == domain 2  score: 39.2 bits;  conditional E-value: 2.6e-13
   EF-hand_8   1 ekgkItreelrrilrilglkkglseeevdilfrefDtdgdGkisfeEFcvllerr 55 
                 ++g I+++e++  +++lg+   +s+ee+ +lf+efD dg+G+i ++E  +ll+rr
  KOO24923.1 126 QDGRISKHEFSVGMAALGID--VSKEEANELFDEFDPDGSGTIEYKELNQLLKRR 178
                 58**********99888888..*************************99998875 PP

  == domain 3  score: 11.6 bits;  conditional E-value: 0.00011
   EF-hand_8  30 ilfrefDtdgdGkisfeEFcvl 51 
                 +lf e D+dg+G++++ EF+  
  KOO24923.1 603 DLFVEWDQDGSGTVDQREFHRA 624
                 789999*************975 PP

  == domain 4  score: 24.5 bits;  conditional E-value: 1e-08
   EF-hand_8   2 kgkItreelrrilrilglkkglseeevdilfrefDtdgdGkisfeE 47 
                 +g +++ e++r+l++lg     + e++d lf +fD+dg+G +++ E
  KOO24923.1 613 SGTVDQREFHRALSLLGVS--ATREQADGLFATFDRDGSGSVTYAE 656
                 6999*************99..***********************98 PP

>> EF-hand_5  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.4   0.1   5.9e-07    0.0011       3      22 ..     117     136 ..     115     139 .. 0.90
   2 !   14.7   0.1   8.9e-06     0.016       2      24 ..     152     174 ..     151     175 .. 0.92
   3 !    8.7   0.0   0.00068       1.2       2      23 ..     602     623 ..     601     626 .. 0.85
   4 !   11.5   0.0   9.3e-05      0.17       4      23 ..     640     659 ..     637     661 .. 0.88

  Alignments for each domain:
  == domain 1  score: 18.4 bits;  conditional E-value: 5.9e-07
                 HHHHHH-SS-SSCE-HHHHH CS
   EF-hand_5   3 dtFqaiDlNgDGkIskeELk 22 
                 d+F++ D N+DG+Isk E+ 
  KOO24923.1 117 DLFREWDENQDGRISKHEFS 136
                 89****************96 PP

  == domain 2  score: 14.7 bits;  conditional E-value: 8.9e-06
                 HHHHHHH-SS-SSCE-HHHHHHH CS
   EF-hand_5   2 kdtFqaiDlNgDGkIskeELktl 24 
                 +++F+++D +g+G+I   EL +l
  KOO24923.1 152 NELFDEFDPDGSGTIEYKELNQL 174
                 579*****************997 PP

  == domain 3  score: 8.7 bits;  conditional E-value: 0.00068
                 HHHHHHH-SS-SSCE-HHHHHH CS
   EF-hand_5   2 kdtFqaiDlNgDGkIskeELkt 23 
                 kd+F + D +g+G+++  E+ +
  KOO24923.1 602 KDLFVEWDQDGSGTVDQREFHR 623
                 6889999*************65 PP

  == domain 4  score: 11.5 bits;  conditional E-value: 9.3e-05
                 HHHHH-SS-SSCE-HHHHHH CS
   EF-hand_5   4 tFqaiDlNgDGkIskeELkt 23 
                 +F  +D +g+G ++  E ++
  KOO24923.1 640 LFATFDRDGSGSVTYAEMQR 659
                 7999*************987 PP

>> NADPH_Ox  Respiratory burst NADPH oxidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.3   0.0     0.013        24      36      70 ..     118     157 ..     104     175 .. 0.79
   2 !    9.4   0.0   0.00073       1.3      19      74 ..     587     647 ..     570     662 .. 0.81

  Alignments for each domain:
  == domain 1  score: 5.3 bits;  conditional E-value: 0.013
    NADPH_Ox  36 rFdklak..dglLlrskfg...eciGmkdskeFaeelfda 70 
                  F++  +  dg++++++f+   + +G++ ske a+elfd 
  KOO24923.1 118 LFREWDEnqDGRISKHEFSvgmAALGIDVSKEEANELFDE 157
                 5666555559*******9633357899***********95 PP

  == domain 2  score: 9.4 bits;  conditional E-value: 0.00073
    NADPH_Ox  19 isktkakeeaaWkevekrFdklak..dglLlrskfgeci...GmkdskeFaeelfdaLarr 74 
                 i++ ++  +a+W++v++ F +  +   g++ + +f + +   G++ ++e a  lf ++ r 
  KOO24923.1 587 IDQIRNALKASWTRVKDLFVEWDQdgSGTVDQREFHRALsllGVSATREQADGLFATFDRD 647
                 666678889***************44456999999987522277999********999885 PP

>> EF-hand_10  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.0   0.0      0.05        90      25      44 ..     117     136 ..     115     142 .. 0.90
   2 !    8.5   0.1   0.00098       1.8      14      48 ..     142     176 ..     139     177 .. 0.90
   3 ?    0.8   0.0      0.24   4.4e+02      25      45 ..     603     623 ..     601     628 .. 0.86
   4 ?    0.4   0.0      0.34   6.1e+02       5      43 ..     619     657 ..     615     660 .. 0.80

  Alignments for each domain:
  == domain 1  score: 3.0 bits;  conditional E-value: 0.05
  EF-hand_10  25 kLFkkcDkSksgrLegeEie 44 
                  LF++ D+ ++gr+  +E+ 
  KOO24923.1 117 DLFREWDENQDGRISKHEFS 136
                 59*************99986 PP

  == domain 2  score: 8.5 bits;  conditional E-value: 0.00098
  EF-hand_10  14 iNievddeYAekLFkkcDkSksgrLegeEieeFyk 48 
                 + i+v+ e A++LF + D   sg++e +E+++ +k
  KOO24923.1 142 LGIDVSKEEANELFDEFDPDGSGTIEYKELNQLLK 176
                 569**************************988765 PP

  == domain 3  score: 0.8 bits;  conditional E-value: 0.24
  EF-hand_10  25 kLFkkcDkSksgrLegeEiee 45 
                  LF + D+  sg+ ++ E+  
  KOO24923.1 603 DLFVEWDQDGSGTVDQREFHR 623
                 6999**************975 PP

  == domain 4  score: 0.4 bits;  conditional E-value: 0.34
  EF-hand_10   5 kEvkrlLreiNievddeYAekLFkkcDkSksgrLegeEi 43 
                  E  r L ++ +    e A  LF + D+  sg+    E+
  KOO24923.1 619 REFHRALSLLGVSATREQADGLFATFDRDGSGSVTYAEM 657
                 56677777777888888899********99999877665 PP

>> Caleosin  Caleosin related protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.7   0.0    0.0034       6.2      13      37 ..     122     146 ..     119     148 .. 0.94
   2 ?    2.0   0.0     0.096   1.7e+02      93     124 ..     149     180 ..     145     186 .. 0.86
   3 ?   -1.4   0.0         1   1.9e+03      13      37 ..     608     632 ..     604     637 .. 0.89
   4 ?    0.4   0.0       0.3   5.4e+02      95     124 ..     637     666 ..     631     677 .. 0.74

  Alignments for each domain:
  == domain 1  score: 6.7 bits;  conditional E-value: 0.0034
    Caleosin  13 fDrdkdGiiypldtyrgfralgfnv 37 
                 +D+++dG i  ++   g+ alg++v
  KOO24923.1 122 WDENQDGRISKHEFSVGMAALGIDV 146
                 9*********************986 PP

  == domain 2  score: 2.0 bits;  conditional E-value: 0.096
    Caleosin  93 qkfeeifskyakekkdaltlkevlellkgqre 124
                 ++ +e+f++++ + ++++++ke+++llk++ e
  KOO24923.1 149 EEANELFDEFDPDGSGTIEYKELNQLLKRRVE 180
                 56689*********************998766 PP

  == domain 3  score: -1.4 bits;  conditional E-value: 1
    Caleosin  13 fDrdkdGiiypldtyrgfralgfnv 37 
                 +D+d  G++   + +r++  lg+++
  KOO24923.1 608 WDQDGSGTVDQREFHRALSLLGVSA 632
                 9************999999999875 PP

  == domain 4  score: 0.4 bits;  conditional E-value: 0.3
    Caleosin  95 feeifskyakekkdaltlkevlellkgqre 124
                  + +f+ ++++ ++++t+ e+++ l  +r 
  KOO24923.1 637 ADGLFATFDRDGSGSVTYAEMQRKLDFRRS 666
                 567899999999999999998887776665 PP

>> Porin_5  Putative porin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.8   3.8e-05     0.067       5      65 ..     510     576 ..     507     603 .. 0.65

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 3.8e-05
     Porin_5   5 vnLiellVkqgvltkeqaealikqAeaeaaaaaka......aaeaaaaaaaasaaasadgevrvtYv 65 
                 + L+  lVk gvl++ +a + + +A+a+a++++k+        ++a  + a +a++   + vr+  v
  KOO24923.1 510 TTLVPKLVKAGVLDDPKAVSALDRARAKAQQEQKKeleltaTVKHAIRKDAPQATKALYNMVRMDVV 576
                 57999*************************9998877665422222223333334444455555444 PP

>> SHIPPO-rpt  Sperm-tail PG-rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.5   0.1      0.79   1.4e+03      16      28 ..     356     369 ..     327     372 .. 0.73
   2 ?    0.8   0.2      0.62   1.1e+03       1      10 [.     381     390 ..     381     401 .. 0.85
   3 ?    7.5   0.4    0.0049       8.7       3      16 ..     426     437 ..     424     448 .. 0.73
   4 ?   12.6   1.8   0.00012      0.21       1      28 [.     460     489 ..     460     490 .. 0.86

  Alignments for each domain:
  == domain 1  score: 0.5 bits;  conditional E-value: 0.79
  SHIPPO-rpt  16 n.ksaPkysfGqrk 28 
                 n ++ P+  fGqr+
  KOO24923.1 356 NlDGRPAMPFGQRT 369
                 556677777***98 PP

  == domain 2  score: 0.8 bits;  conditional E-value: 0.62
  SHIPPO-rpt   1 lPGPGtYkpn 10 
                 +P P+ Y+p+
  KOO24923.1 381 TPPPNRYNPP 390
                 79*******8 PP

  == domain 3  score: 7.5 bits;  conditional E-value: 0.0049
  SHIPPO-rpt   3 GPGtYkpnknvpsn 16 
                 GPGtY pn   p  
  KOO24923.1 426 GPGTYRPNY--PAD 437
                 9*******9..333 PP

  == domain 4  score: 12.6 bits;  conditional E-value: 0.00012
  SHIPPO-rpt   1 lPGPGtYkpnk.nvpsn.ksaPkysfGqrk 28 
                 + GPG+Y+ +  + +   +  P+ysf++++
  KOO24923.1 460 NLGPGAYDLPApDQTPGaRVPPAYSFSSAP 489
                 57*********97777777888*****997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (678 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       703  (0.0392102); expected 358.6 (0.02)
Passed bias filter:                      519  (0.0289475); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.60u 0.30s 00:00:00.89 Elapsed: 00:00:00.43
# Mc/sec: 4687.93
//
Query:       KOO24924.1  [L=283]
Description: hypothetical protein Ctob_006794 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (283 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       375  (0.0209158); expected 358.6 (0.02)
Passed bias filter:                      283  (0.0157845); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.43u 0.26s 00:00:00.69 Elapsed: 00:00:00.42
# Mc/sec: 2020.89
//
Query:       KOO24925.1  [L=322]
Description: hypothetical protein Ctob_006795 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (322 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       877  (0.0489152); expected 358.6 (0.02)
Passed bias filter:                      408  (0.0227564); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.46u 0.25s 00:00:00.71 Elapsed: 00:00:00.40
# Mc/sec: 2444.67
//
Query:       KOO24926.1  [L=284]
Description: hypothetical protein Ctob_006796 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (284 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       376  (0.0209716); expected 358.6 (0.02)
Passed bias filter:                      191  (0.0106531); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.25s 00:00:00.62 Elapsed: 00:00:00.37
# Mc/sec: 2279.39
//
Query:       KOO24927.1  [L=791]
Description: glutamate-cysteine ligase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   1.8e-143  478.4   0.0   2.3e-143  478.0   0.0    1.2  1  GCS       Glutamate-cysteine ligase
  ------ inclusion threshold ------
      0.071   13.1   0.0       0.47   10.5   0.0    2.1  2  SLIDE     SLIDE
       0.13   12.6   1.9       0.58   10.5   1.9    2.2  1  DUF4620   Domain of unknown function (DUF4620)


Domain annotation for each model (and alignments):
>> GCS  Glutamate-cysteine ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  478.0   0.0  3.9e-147  2.3e-143       1     365 []     251     696 ..     251     696 .. 0.94

  Alignments for each domain:
  == domain 1  score: 478.0 bits;  conditional E-value: 3.9e-147
         GCS   1 iymDamgfGmGsccLQvtfqaknieearllYdqlaplaPillalsaaspiykGlladvdvrwnvisasvDdrteeErgeeplknek............. 86 
                 +ymDam+fGmG+ccLQvtfqa++++e+r+lYdqla+laP++lal+a++p+ +G l d+d rw +is+svDdrt++Er +  ++++              
  KOO24927.1 251 VYMDAMAFGMGCCCLQVTFQAQDVDESRHLYDQLAVLAPMMLALTASTPAARGTLLDTDSRWGIISQSVDDRTPTERRSAGTERSArlpavngtdgsht 349
                 8***************************************************************************99888655446788888889999 PP

         GCS  87 ........................................kripksrydsvdlylse......ekrlreeyndlelpldeevlkklleagvdellakhi 139
                                                            +ksryds++ly+ +      + +++e+ynd++ p+ e+ ++++++ag+d  la+hi
  KOO24927.1 350 asdgtppksappkvpsssavadgpsgpsglyhdamwqsgrGAQHKSRYDSISLYICNelaknkNPQCSEQYNDVPAPMCEKSYARMVAAGIDPMLARHI 448
                 999999999999999*********************99996789***********77566665699********************************* PP

         GCS 140 ahlfirdplvifeeki.eqddekstdhFeniqstnWqtlrfKpPp......pesekigWrvefRpmevqltdfenaafsvfivLltrvilsfklnfyip 231
                 ahlf rdplvif+ ++ e +d +st+hFen+qstnWqt+r+KpPp        + +igWrvefR+me+ +tdfenaaf+vfivL++r+il f+ln+y+p
  KOO24927.1 449 AHLFSRDPLVIFRGRVqELSDADSTEHFENLQSTNWQTVRWKPPPasstflGGTADIGWRVEFRSMEISMTDFENAAFTVFIVLVSRIILYFNLNLYLP 547
                 ****************667899***********************777665346679****************************************** PP

         GCS 232 iskvdenmkrAhkrdavleekfyfrkniakkeeaaekak................eieemtideiingkegefpglipliesylesvevdvetrkklek 314
                 +skvdenm+rA++rda++++k +f +n+++    ++ +k                  +e+t+ ei++gk g++ gl p+i +yl+ +  d+ t ++++ 
  KOO24927.1 548 LSKVDENMRRAQTRDALHTQKMWFSQNLMPPCGCETPQKkmphekvatlfgagevAPSEVTVLEILTGK-GTYRGLCPMIMAYLDVIGSDSVTLRTVTV 645
                 ***************************99988766655578999*********99999***********.***************************** PP

         GCS 315 ylkliskrasgelltaAkwiRefvakhpdYkkdSvvsdeinydLlkkveki 365
                 yl++i  ra+g+l+t A+w+R+++++hpdYk dSvvs++i+ dL++k+++i
  KOO24927.1 646 YLDFIVARAAGQLVTPATWMRNYIRSHPDYKFDSVVSSRIATDLMMKCHRI 696
                 ************************************************987 PP

>> SLIDE  SLIDE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.0      0.27   1.6e+03      52      77 ..      12      41 ..       6      49 .. 0.82
   2 ?   10.5   0.0   7.9e-05      0.47      75     105 ..     665     695 ..     654     702 .. 0.91

  Alignments for each domain:
  == domain 1  score: -0.9 bits;  conditional E-value: 0.27
       SLIDE 52 yteeeDrfllvllakyGygn....yekikk 77
                + e  +  ++ +++ +G+++    +ek+k+
  KOO24927.1 12 WDESREDGIMEWVSTHGIDQflamWEKVKA 41
                667777789999********9999999875 PP

  == domain 2  score: 10.5 bits;  conditional E-value: 7.9e-05
       SLIDE  75 ikkeiresplFrfDwflksrtpqelqkRcet 105
                 +++ ir++p ++fD ++ sr +++l  +c+ 
  KOO24927.1 665 MRNYIRSHPDYKFDSVVSSRIATDLMMKCHR 695
                 7899**********************99985 PP

>> DUF4620  Domain of unknown function (DUF4620)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   1.9   9.7e-05      0.58      28      79 ..     223     270 ..     217     312 .. 0.90

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 9.7e-05
     DUF4620  28 rdqeapgssmppaaaqpsamgalvppataheplddpalhwlacgcclslpaq 79 
                 rd ++p +s p  +aqps+       a a + +   a+ +   +ccl +  q
  KOO24927.1 223 RDTHTPAPSRPVGCAQPSTVE----EANAMDEVYMDAMAFGMGCCCLQVTFQ 270
                 99****************977....888988899999999999999987655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (791 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       673  (0.037537); expected 358.6 (0.02)
Passed bias filter:                      547  (0.0305092); expected 358.6 (0.02)
Passed Vit filter:                        56  (0.00312343); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.67u 0.28s 00:00:00.95 Elapsed: 00:00:00.42
# Mc/sec: 5614.19
//
Query:       KOO24928.1  [L=667]
Description: wd repeat protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    4.4e-38  128.6  12.3    6.1e-07   30.0   0.2    7.5  7  WD40         WD domain, G-beta repeat
      1e-06   28.9   0.1        5.8    7.3   0.0    6.5  8  ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain
     0.0012   18.5   0.1     0.0023   17.5   0.1    1.5  1  LisH_TPL     LisH-like dimerisation domain
     0.0047   16.8   0.0      0.021   14.8   0.0    2.1  2  LisH         LisH
  ------ inclusion threshold ------
        0.1   12.3   0.2       0.24   11.1   0.2    1.6  1  PDEase_I     3'5'-cyclic nucleotide phosphodiesterase


Domain annotation for each model (and alignments):
>> WD40  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.3   0.0     7e-05      0.25       5      37 ..     313     346 ..     310     347 .. 0.87
   2 !   20.8   0.1   1.4e-07    0.0005       1      37 [.     351     388 ..     351     389 .. 0.90
   3 !   30.0   0.2   1.7e-10   6.1e-07       3      38 .]     443     479 ..     441     479 .. 0.94
   4 !   14.3   0.0   1.6e-05     0.056       3      38 .]     485     521 ..     483     521 .. 0.88
   5 !   12.1   0.0     8e-05      0.29       3      38 .]     527     563 ..     526     563 .. 0.88
   6 !   17.5   0.0   1.6e-06    0.0057       2      38 .]     568     608 ..     567     608 .. 0.80
   7 !   23.5   0.1     2e-08   7.1e-05       2      37 ..     613     649 ..     612     650 .. 0.91

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 7e-05
                 EEEESS.SSEEEEEEETTSSEEEEEETTSEEEEE CS
        WD40   5 rtltGH.ssvtslafspdgawlasGsdDgtvriW 37 
                 rtl+GH  +   +a+     +l+sG+ D+ v +W
  KOO24928.1 313 RTLRGHaAGLKTVAWLGRTGLLLSGGNDPAVCLW 346
                 79****88899997777777799*********** PP

  == domain 2  score: 20.8 bits;  conditional E-value: 1.4e-07
                 TEEEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEE CS
        WD40   1 gqclrtltGH.ssvtslafspdgawlasGsdDgtvriW 37 
                 g+c+  l+GH   v+ la+ +    +as+s Dgt+++W
  KOO24928.1 351 GTCISRLEGHaARVWQLAVGRTDGHVASASADGTIKLW 388
                 679999****777*****8888888999999******* PP

  == domain 3  score: 30.0 bits;  conditional E-value: 1.7e-10
                 EEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40   3 clrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 
                 +++tltGH ++v+s++f+p  + l+s+++D++vr++d
  KOO24928.1 443 PVGTLTGHqGDVYSVCFHPVDDQLVSCGYDKSVRLFD 479
                 789*****888****************9*******98 PP

  == domain 4  score: 14.3 bits;  conditional E-value: 1.6e-05
                 EEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40   3 clrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 
                  +r + GH  +v+   ++  g++++sG++D t+ +Wd
  KOO24928.1 485 EVRAFLGHeLPVRQAVYNATGNLIVSGGKDATLFFWD 521
                 678889**77797777********************9 PP

  == domain 5  score: 12.1 bits;  conditional E-value: 8e-05
                 EEEEEESS..SSEEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40   3 clrtltGH..ssvtslafspdgawlasGsdDgtvriWd 38 
                 c+r+l+ H  + vts++ s  g  l+ +s+D+  r+Wd
  KOO24928.1 527 CVRKLR-HslGEVTSVQLSNCGMQLLVSSKDNAARLWD 563
                 788888.64666****999999999999*********9 PP

  == domain 6  score: 17.5 bits;  conditional E-value: 1.6e-06
                 EEEEEEESS.SSEEEEE......EETTSSEEEEEETTSEEEEEE CS
        WD40   2 qclrtltGH.ssvtsla......fspdgawlasGsdDgtvriWd 38 
                 ++lr ++GH +    ++      f p  + ++sGs+Dg+v +W+
  KOO24928.1 568 RPLRAYKGHlNT---CKnfvrarFGPGRDSVMSGSEDGSVCLWS 608
                 58999****644...33333455********************5 PP

  == domain 7  score: 23.5 bits;  conditional E-value: 2e-08
                 EEEEEEESSSS.EEEEEEETTSSEEEEEETTSEEEEE CS
        WD40   2 qclrtltGHss.vtslafspdgawlasGsdDgtvriW 37 
                 ++l+ l+GH++ v++  ++p+  +las+s Dgtvr W
  KOO24928.1 613 ELLHRLRGHTDvVYDAVWNPSLGLLASCSQDGTVRTW 649
                 57999****8857**********************99 PP

>> ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.0       1.3   4.8e+03      22      70 ..      53     101 ..      42     112 .. 0.71
   2 ?    1.7   0.0     0.088   3.1e+02      41      81 ..     322     362 ..     312     372 .. 0.85
   3 ?   -0.3   0.0      0.37   1.3e+03      48      65 ..     371     388 ..     358     410 .. 0.60
   4 ?    4.7   0.0     0.011        38      36      76 ..     449     489 ..     443     496 .. 0.88
   5 ?    2.0   0.0     0.071   2.6e+02      38      85 ..     493     539 ..     488     542 .. 0.84
   6 !    7.3   0.0    0.0016       5.8      39      77 ..     536     574 ..     526     584 .. 0.88
   7 ?    1.4   0.0      0.11     4e+02      54      81 ..     596     623 ..     587     631 .. 0.83
   8 ?    2.1   0.0     0.069   2.5e+02       3      24 ..     630     651 ..     628     658 .. 0.83

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 1.3
  ANAPC4_WD40  22 fRlngqrvwtleedkedsevrsLaWkpdgklLavaysdgevrlldaesg 70 
                  f    + + +++ ++ d+   +++++++ ++   ay +  ++l++a++ 
   KOO24928.1  53 FKRMRKAILEGDWPEFDKLCGKMSFQQQKSFQYSAYREQFIELIEAHEY 101
                  5555566666666777777888899999999999999999999988764 PP

  == domain 2  score: 1.7 bits;  conditional E-value: 0.088
  ANAPC4_WD40  41 vrsLaWkpdgklLavaysdgevrlldaesgkvvhslsvkse 81 
                   + +aW     lL  + +d +v l +  +g++++ l+ ++ 
   KOO24928.1 322 LKTVAWLGRTGLLLSGGNDPAVCLWETRTGTCISRLEGHAA 362
                  57789999999**********************99987766 PP

  == domain 3  score: -0.3 bits;  conditional E-value: 0.37
  ANAPC4_WD40  48 pdgklLavaysdgevrll 65 
                    +   a a +dg+++l 
   KOO24928.1 371 RTDGHVASASADGTIKLW 388
                  222233555555555554 PP

  == domain 4  score: 4.7 bits;  conditional E-value: 0.011
  ANAPC4_WD40  36 kedsevrsLaWkpdgklLavaysdgevrlldaesgkvvhsl 76 
                  ++++ v s++++p +  L+    d +vrl+d   g+ v+++
   KOO24928.1 449 GHQGDVYSVCFHPVDDQLVSCGYDKSVRLFDTAVGTEVRAF 489
                  67899**************************9999988766 PP

  == domain 5  score: 2.0 bits;  conditional E-value: 0.071
  ANAPC4_WD40  38 dsevrsLaWkpdgklLavaysdgevrlldaesgkvvhslsvksekavt 85 
                  +  vr+  ++  g+l++ + +d ++ + d  s+ +v++l+ +  + vt
   KOO24928.1 493 ELPVRQAVYNATGNLIVSGGKDATLFFWDERSALCVRKLRHSLGE-VT 539
                  66799999*********************9999999998776553.55 PP

  == domain 6  score: 7.3 bits;  conditional E-value: 0.0016
  ANAPC4_WD40  39 sevrsLaWkpdgklLavaysdgevrlldaesgkvvhsls 77 
                  +ev+s++ ++ g  L v+ +d++ rl d+  ++ +++++
   KOO24928.1 536 GEVTSVQLSNCGMQLLVSSKDNAARLWDVRAARPLRAYK 574
                  79***************************9999888776 PP

  == domain 7  score: 1.4 bits;  conditional E-value: 0.11
  ANAPC4_WD40  54 avaysdgevrlldaesgkvvhslsvkse 81 
                  + + +dg+v l +  s++++h l+ +++
   KOO24928.1 596 MSGSEDGSVCLWSLASAELLHRLRGHTD 623
                  56889****************9988776 PP

  == domain 8  score: 2.1 bits;  conditional E-value: 0.069
  ANAPC4_WD40   3 wcptmDLiAlatedgellvfRl 24 
                  w+p+  L+A  ++dg ++  R 
   KOO24928.1 630 WNPSLGLLASCSQDGTVRTWRH 651
                  9999999999999999988775 PP

>> LisH_TPL  LisH-like dimerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5   0.1   6.5e-07    0.0023       2      30 .]      13      41 ..      13      41 .. 0.96

  Alignments for each domain:
  == domain 1  score: 17.5 bits;  conditional E-value: 6.5e-07
    LisH_TPL  2 qDvVRLilQFLkEnsLHrtlqaLqeESgV 30
                +++V LilQ+L  ++   ++ + q+ES V
  KOO24928.1 13 REIVHLILQYLQDEGYTASFLTMQDESNV 41
                69*************************87 PP

>> LisH  LisH
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.0   5.9e-06     0.021       6      27 .]      18      39 ..      17      39 .. 0.97
   2 ?   -1.6   0.0      0.82   2.9e+03      11      23 ..     466     478 ..     466     478 .. 0.83

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 5.9e-06
                HHHHHHHHCT-HHHHHHHHHHT CS
        LisH  6 LIydYLvkeGyeetAeaFekEa 27
                LI+ YL+ eGy+ ++ +++ E+
  KOO24928.1 18 LILQYLQDEGYTASFLTMQDES 39
                8******************998 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 0.82
                 HHHCT-HHHHHHH CS
        LisH  11 LvkeGyeetAeaF 23 
                 Lv +Gy ++ + F
  KOO24928.1 466 LVSCGYDKSVRLF 478
                 899***9987665 PP

>> PDEase_I  3'5'-cyclic nucleotide phosphodiesterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.2   6.6e-05      0.24      91     190 ..      77     169 ..      28     195 .. 0.77

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 6.6e-05
                 TTTS-HHHHHHHHHHHHHHHHTTSGGGHHHHHHHHHHHCCTTS-TTTCT.-HHHHHHHHHHHHHHHHTGCCCS-HHHHHHHHHHHHHHHHHHHHHHHHC CS
    PDEase_I  91 fknlskeeykelrkliielIlaTdmakhfelleklkelvkkkeknslnkeeeedkklllsllikaaDisnptkpweiskkwaelvleEffeqgdeekel 189
                 f++ ++ +y+  r+ +ielI a + +k f++l+k  +  ++++      +  + k+  l+ l+++  + ++  +w+  +   e +l  f    d+e+++
  KOO24928.1  77 FQQQKSFQYSAYREQFIELIEAHEYQKAFTHLTKRLKPLERSAA-----SAGDFKN--LCYLLTCRSVHEVLPHWQGVSAAREALLAQFATMMDLEERQ 168
                 44444556888999999999999999999998886333332222.....1233445..579*********************************98755 PP

                 T CS
    PDEase_I 190 g 190
                 +
  KOO24928.1 169 Q 169
                 3 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (667 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       666  (0.0371465); expected 358.6 (0.02)
Passed bias filter:                      543  (0.0302861); expected 358.6 (0.02)
Passed Vit filter:                        48  (0.00267723); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.66u 0.26s 00:00:00.92 Elapsed: 00:00:00.43
# Mc/sec: 4636.80
//
Query:       KOO24929.1  [L=147]
Description: hypothetical protein Ctob_006799 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
        0.1   12.7   0.0       0.17   12.1   0.0    1.2  1  AGH       Androgenic gland hormone


Domain annotation for each model (and alignments):
>> AGH  Androgenic gland hormone
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   9.2e-06      0.17      11      33 ..      56      78 ..      52      91 .. 0.87

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 9.2e-06
         AGH 11 adirftvqcicnelgyfpterls 33
                 +irf  q +cnelg+   erl 
  KOO24929.1 56 DNIRFNYQILCNELGFDEVERLN 78
                47******************996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (147 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       368  (0.0205254); expected 358.6 (0.02)
Passed bias filter:                      324  (0.0180713); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.35u 0.26s 00:00:00.61 Elapsed: 00:00:00.39
# Mc/sec: 1144.00
//
Query:       KOO24930.1  [L=470]
Description: hypothetical protein Ctob_003759 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (470 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      3439  (0.191812); expected 358.6 (0.02)
Passed bias filter:                      527  (0.0293937); expected 358.6 (0.02)
Passed Vit filter:                       195  (0.0108762); expected 17.9 (0.001)
Passed Fwd filter:                        55  (0.00306766); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 1.61u 0.41s 00:00:02.02 Elapsed: 00:00:00.58
# Mc/sec: 2425.93
//
Query:       KOO24931.1  [L=383]
Description: sorbitol dehydrogenase-like protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.2e-22   79.8   5.0    1.7e-22   79.4   4.1    1.7  2  ADH_N         Alcohol dehydrogenase GroES-like domain
      1e-18   67.6   0.3    1.9e-18   66.7   0.3    1.5  1  ADH_zinc_N    Zinc-binding dehydrogenase
    4.5e-11   42.7   0.2    7.7e-11   41.9   0.2    1.3  1  Glu_dehyd_C   Glucose dehydrogenase C-terminus
    2.7e-06   28.5   0.0    5.7e-06   27.4   0.0    1.6  1  ADH_zinc_N_2  Zinc-binding dehydrogenase


Domain annotation for each model (and alignments):
>> ADH_N  Alcohol dehydrogenase GroES-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   79.4   4.1   3.8e-26   1.7e-22       2     109 .]      25     148 ..      24     148 .. 0.90
   2 ?   -2.9   0.0       1.4   6.1e+03      46      76 ..     337     371 ..     334     380 .. 0.58

  Alignments for each domain:
  == domain 1  score: 79.4 bits;  conditional E-value: 3.8e-26
                 TEEEEEEEEEEE-HHHHHHHTTS............TTTTSSSSEE---EEEEEEEEESTT-CS--TT-EEEE-SEEE-SSS.HHHHTT-GGG-TTBEET CS
       ADH_N   2 gevlikvkaagiCgsDlhilkgg............kelevklplilGHEivGeveevgpevkklkvGdrVvvepliscgeC.aaCkegeenlCeeakll 87 
                 gev + ++a+giCgsDl ++ +g            + l   +   +GHE +G+v +vg++v++l vGdrV++ep ++cg+C ++C++g++nlC++++++
  KOO24931.1  25 GEVALAINAVGICGSDLAYWAQGvaggfkkldfsaEGLCKGYCGQMGHECAGTVIAVGEGVDSLVVGDRVALEPGVPCGTCvQHCRKGRYNLCKSMRFI 123
                 799******************999999976666554444444489************************************668*************** PP

                 TTS...S-SSSBSEEEECGGGEEEE CS
       ADH_N  88 gvs...ldGgfaeyvvvpekklvkl 109
                 g     ++G++ +++  p+++++kl
  KOO24931.1 124 GSAvneVPGAMVTRFNHPAAFCYKL 148
                 **9999**************99986 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 1.4
                 ESTT-CS--TT-..EEEE-SEEE-SS..SHHHHTT CS
       ADH_N  46 vgpevkklkvGd..rVvvepliscge..CaaCkeg 76 
                 +g++++ ++ G+  +V++ p+ + g+  C+ C+ +
  KOO24931.1 337 AGHAFEYFATGEpiKVLITPNEAAGDdgCKPCEFD 371
                 56666666666622455555555444558888755 PP

>> ADH_zinc_N  Zinc-binding dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.7   0.3   4.3e-22   1.9e-18       1     129 [.     188     318 ..     188     319 .. 0.92

  Alignments for each domain:
  == domain 1  score: 66.7 bits;  conditional E-value: 4.3e-22
                 HHHHHHHHHHHHTT-EEEE.EESSHHHHHHHHHTTESEEEETTTC.HHHHHHHHHTTTSSEEEEEESSCSHHHHHHHHHCEEEEEEEEECSC....TSS CS
  ADH_zinc_N   1 gvGlaavqlAkalGaevia.vdsseeklelakklGadevinykea.dlverikeltggegvdvvfecvGsgatleaalkllkpgGrlvvvGg....gkg 93 
                 ++Gl+++ +Aka+Ga+v a +d  + kl  a+ lGa++++ + ++ +lv+  +++ gg  +dv fec+G+  +l+ +++++  gG l vv+        
  KOO24931.1 188 PIGLMTLLAAKAAGATVLAiTDMVDAKLVVARTLGATYTFKA-NTpNLVSVAQQAVGG-EFDVTFECSGVVPALDLCVSATGSGGVLCVVANykadE-- 282
                 79*****************9**********************.888**********55.********************************854333.. PP

                 EEE....EEHHHHHHTT-EEEEE-SSCHHHHHHHHHHHHH CS
  ADH_zinc_N  94 eee....fdlrnlllkeksilGsllgslreefkealdlla 129
                        ++l+ l+++e+ ++G+ ++   + +++al+l++
  KOO24931.1 283 --AgrtpVRLQELARREIDLVGVYRYC--NLYPTALELVS 318
                 ..35667*******************9..99999999976 PP

>> Glu_dehyd_C  Glucose dehydrogenase C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.9   0.2   1.7e-14   7.7e-11       6     208 ..     159     352 ..     155     355 .. 0.72

  Alignments for each domain:
  == domain 1  score: 41.9 bits;  conditional E-value: 1.7e-14
  Glu_dehyd_C   6 LvEPisiveKaielaeasrsafewepesalvlGaGslGLLalalleaeerglervyvlgrrdrpdptidlveelGatYvdsretp.vdeip..easee 100
                  + EP+ ++  a+  a+           ++l++GaG++GL++  ll+a+  g    +vl+ +d  d ++ + + lGatY  +++tp + +++  ++  e
   KOO24931.1 159 MFEPLCVALQAVRRARV---GI---AMRVLITGAGPIGLMT--LLAAKAAG---ATVLAITDMVDAKLVVARTLGATYTFKANTPnLVSVAqqAVGGE 245
                  56666665554443322...22...3479************..55543343...5699999*****************98877754333331156789 PP

  Glu_dehyd_C 101 mdlvvEaTGsakhafeaiealapnGvaaLlGvpedsevevdggelhrelvleNkalvGsvNanrrhfeaavdtLaalpeslldelvtkvvdldeleeA 198
                  +d+ +E+ G  +++   ++a ++ Gv + +  ++  e+     +l +el  +   lvG v    + + +a++ ++   +  l+ l++++  l+++ +A
   KOO24931.1 246 FDVTFECSGVVPALDLCVSATGSGGVLCVVANYKADEAGRTPVRL-QELARREIDLVG-VYRYCNLYPTALELVS-SGAVNLKPLISRKFSLEQAGHA 340
                  ****************************99888777665555555.456777777888.5667888888886554.4566688899999999999999 PP

  Glu_dehyd_C 199 fe..dddetiKt 208
                  fe   + e iK+
   KOO24931.1 341 FEyfATGEPIKV 352
                  884444556666 PP

>> ADH_zinc_N_2  Zinc-binding dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.4   0.0   1.3e-09   5.7e-06       1     125 [.     221     347 ..     221     350 .. 0.70

  Alignments for each domain:
  == domain 1  score: 27.4 bits;  conditional E-value: 1.3e-09
                   TT-SEEEETTSTTHH....HHH-TT-EEEEEES-H.HHHH.HHHHHHE.EEEEEEEE----.S-EEE-CHHHCTTT-EEEE--GGG...-.-HHHHH CS
  ADH_zinc_N_2   1 lGAdevidyrtedfe....aatggegvDvvldtvg.gealleaslkvl.pggGrlvsiggpplsaallkpakkrkgrsvkyeflfsmkasaqadile 91 
                   lGA+  ++  t++++    +a+ g+ +Dv +++ g    +l+ ++++  +g G l+++++  + +a + p +   + +++   l+ + +    ++  
    KOO24931.1 221 LGATYTFKANTPNLVsvaqQAV-GGEFDVTFECSGvV-PALDLCVSATgSG-GVLCVVANYKADEAGRTPVR-LQELARREIDLVGVYR--YCNLYP 311
                   7888888777777777886677.556*********55.5559999999444.77777764333333333333.3334444444443444..566689 PP

                   HHHHHHHHHH..----EEEEEEGGGHHHHHHHHHSS CS
  ADH_zinc_N_2  92 elaalieeGk..lrpvvdrvfpleeaaeAhrylesg 125
                   + ++l+++G+  l+p ++r f+le+a  A++y ++g
    KOO24931.1 312 TALELVSSGAvnLKPLISRKFSLEQAGHAFEYFATG 347
                   99*******98899******************9998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (383 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       461  (0.0257125); expected 358.6 (0.02)
Passed bias filter:                      327  (0.0182386); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.45u 0.28s 00:00:00.73 Elapsed: 00:00:00.42
# Mc/sec: 2735.20
//
Query:       KOO24932.1  [L=551]
Description: beta-hexosaminidase subunit beta-like protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    6.5e-83  279.0   0.1    9.5e-83  278.5   0.1    1.2  1  Glyco_hydro_20   Glycosyl hydrolase family 20, catalytic doma
    3.2e-12   47.3   0.0    1.1e-11   45.5   0.0    1.9  1  Glycohydro_20b2  beta-acetyl hexosaminidase like
    5.5e-07   30.4   0.0    1.1e-06   29.5   0.0    1.5  1  Glyco_hydro_20b  Glycosyl hydrolase family 20, domain 2


Domain annotation for each model (and alignments):
>> Glyco_hydro_20  Glycosyl hydrolase family 20, catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  278.5   0.1   1.6e-86   9.5e-83       1     353 [.     152     477 ..     152     478 .. 0.93

  Alignments for each domain:
  == domain 1  score: 278.5 bits;  conditional E-value: 1.6e-86
  Glyco_hydro_20   1 fkyRGlmlDvaRhflsveeikrliDamaaaKlNvlHwHltDdqgwrleikkyPeLtekgakreskeseeelsgfYtkedireiveYAaergieVi 95 
                     f+yRG m+D++Rhf++v +ik +iDama+aK+NvlHwH++D+ +++ e   +P+++  ga ++++        +Y+ + ireiveYA  rg++Vi
      KOO24932.1 152 FAYRGTMIDTSRHFYPVTSIKMHIDAMAYAKMNVLHWHIVDEISFPYESVVLPQMSLDGAFSPKH--------VYSIAAIREIVEYAMLRGVRVI 238
                     99*************************************************************99........********************** PP

  Glyco_hydro_20  96 pEidmPgHaraalkaypelvtkekaeqsveqsvqvevkesvlnptneetyeflekvldevaelfp.seyvHiGGDEvkkkqwkkspeiqalikee 189
                     pE+d+PgH++ ++ ++  l+++      +++++ + ++ + lnpt ++ty +l+++l ev ++f  ++y+H+GGDEv+k++w+++p+i ++++e+
      KOO24932.1 239 PEFDTPGHVSRGWGSLGVLTQC------YDVKTGAPTNFGALNPTLNQTYAVLSTLLAEVRDVFApEAYIHVGGDEVPKECWQSNPQIASWLHEH 327
                     ***************9988887......778889999999************************879***************************9 PP

  Glyco_hydro_20 190 g.lksveelqsyfvkrvekilkekgkkligWdeilekgkasklakknttvqsWrele.......keaaeklakkgydvilspadalYlDfgqekk 276
                       +k+++ l+ yf +r+   lk++g++ i+W+ei+++g   +++++ t++++W++ +       ++++ k++ +g++ +ls+   +Yl++    +
      KOO24932.1 328 PsVKDFAGLETYFEQRLLALLKAQGSSYIVWQEIFDNGV--EILPD-TVIEVWKGGHggdqwlwQTEMAKVTGAGFKSVLSA--PYYLNYIAYGA 417
                     889***********************************9..55555.9*******77999999999999999*********8..79999888733 PP

  Glyco_hydro_20 277 eeeegleiatfaslekvynyepvakeaastslseeekkkkilGveaalWtEvirdsaeleyrvfPRlaalAErlWsk 353
                                 ++ ++y+ ep++ +     +++e +  +i+G ea++W+E+i d+++l +r++PR+aa+AEr+Ws+
      KOO24932.1 418 ------------DWINYYSIEPANFTGG---AAAESNG-LIAGLEACFWSEYI-DATNLASRAWPRAAAVAERAWSA 477
                     ............3557888888888865...4444444.9*************.*********************96 PP

>> Glycohydro_20b2  beta-acetyl hexosaminidase like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.5   0.0   1.9e-15   1.1e-11       1     137 []      23     134 ..      23     134 .. 0.80

  Alignments for each domain:
  == domain 1  score: 45.5 bits;  conditional E-value: 1.9e-15
  Glycohydro_20b2   1 lwPaPteytigsktlrlspsnfrlkvesaaseaveellheafdrtlkelfkskvvpwakeprnskfepkvstavskkkediktvevsltsekse 94 
                      ++P+P+++t + ++++l +++++l   + +s     +l++afdr+++ +f+++   +a         p        + ++i+  +v++ts  ++
       KOO24932.1  23 VLPRPQQQTDSGDVFSLGEEFQFLA-VGVHS---TPMLQNAFDRYRAIIFQRRKPDGAA--------P--------ALSTITGCDVNVTSDVQV 96 
                      68*****997777777777555555.44443...469*************866555555........4........457899999999888754 PP

  Glycohydro_20b2  95 aeeltlevdEsYtLsvksasgsakisansvlGalhGLeTlqQL 137
                          tl +dEsY+L+v  a  +  + a +v+Gal +LeT++QL
       KOO24932.1  97 ---KTLTTDESYELHV-RAP-RLFVRAATVFGALYALETFSQL 134
                      ...5999*********.444.9********************9 PP

>> Glyco_hydro_20b  Glycosyl hydrolase family 20, domain 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.5   0.0   1.8e-10   1.1e-06       4     123 ..      23     148 ..      20     149 .. 0.74

  Alignments for each domain:
  == domain 1  score: 29.5 bits;  conditional E-value: 1.8e-10
  Glyco_hydro_20b   4 viPePqeveaqegefalgsevtivvee....aadeatadllaevlkaatgirlteakepgkgdi.......rllalkd....aelgaEgYrLav 82 
                      v+P+Pq+ + ++  f+lg+e +  +      + ++ + d+ ++++    + r ++  +p+  +i            +d    + + +E+Y+L v
       KOO24932.1  23 VLPRPQQQTDSGDVFSLGEEFQFLAVGvhstPMLQNAFDRYRAIIF---QRRKPDGAAPALSTItgcdvnvT----SDvqvkTLTTDESYELHV 109
                      99****************9987655443223466666666666666...55555666666555545544322....1233448999******** PP

  Glyco_hydro_20b  83 dedtitiegkdtdGlfyGvqTLrqllpqaaggtlpaveirD 123
                      ++ +  +++++  G++y+++T+ ql++ +   ++ +++i+D
       KOO24932.1 110 RAPRLFVRAATVFGALYALETFSQLVRSD--LSIDGTVITD 148
                      ****************************5..7999999999 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (551 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       298  (0.0166211); expected 358.6 (0.02)
Passed bias filter:                      273  (0.0152267); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.51u 0.24s 00:00:00.75 Elapsed: 00:00:00.41
# Mc/sec: 4014.56
//
Query:       KOO24933.1  [L=228]
Description: hypothetical protein Ctob_003763 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    4.9e-25   89.2   0.0    5.6e-25   89.0   0.0    1.1  1  Metallophos  Calcineurin-like phosphoesterase


Domain annotation for each model (and alignments):
>> Metallophos  Calcineurin-like phosphoesterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   89.0   0.0   3.1e-29   5.6e-25       4     203 ..      15     218 ..      12     219 .. 0.86

  Alignments for each domain:
  == domain 1  score: 89.0 bits;  conditional E-value: 3.1e-29
                  EEEESBTBTTCCTHHHHHHHHHHHHHHHTTE.........SEEEEESTSSSSSHHHHHHHHH.HHHHHHHTSEEEEEC-TTS........CHHHHHHH CS
  Metallophos   4 lvigDlHlalgggqlddllkllddllreekp.........dlvllaGDlvdrgdlekellel.laalvkypipvylllGNHe........gfeeelln 83 
                   ++gDlH     gq+ dl++++  + ++ ++         +l+l  GD+vdrg  + e++ l la ++  p +v ll+GNHe        gf++e+ +
   KOO24933.1  15 KIFGDLH-----GQFGDLQRFFAAFGSP-NAytgdvdycsYLFL--GDYVDRGKHSLEVVALlLALKICHPSRVTLLRGNHEdpqvnahyGFRQECMR 104
                  589****.....**********999666.223555566779999..*******77777777769999999**************************** PP

                  HHHHHHHHHHHHEHHHCEEETSEEEEEETTEEEEEEEESECEEE...THHHHHHHHHHHSCHHHHCCHHHHHHHHHHTTCSEEEEEESSESS...CSS CS
  Metallophos  84 kygylgifsepwrsdaevfnnlplaslgsgslkvlllhGgspel...lvsldklgslnleleapepgdewlkdlekrekadwvivlgHsply...rgs 175
                  + ++ +   ++w   ++vf+ +p+a+l+++   vl +hGg   +   l +ld+l+ l+++  +  ++ + l++    +++    ++  ++++   + +
   KOO24933.1 105 RCRDGA---HVWTAINQVFEMMPVAALIDD--VVLAVHGG---IgesLQNLDQLRELPRPVSVNLSQRNVLNE----TQTVLSAAIRIRGVPirsSPN 190
                  *99865...89*******************..********...433689999999999999988888888888....666666666677777778888 PP

                  SCSCCHHHHHHHHHHTTESEEEEESSSS CS
  Metallophos 176 gylfgdealedllkkygvdlvisGHtHv 203
                     f++++++ ++  +g++l++++H++v
   KOO24933.1 191 TVAFAPDRVRAFCAANGLKLILRAHQCV 218
                  9************************975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (228 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       328  (0.0182944); expected 358.6 (0.02)
Passed bias filter:                      291  (0.0162307); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.24s 00:00:00.65 Elapsed: 00:00:00.41
# Mc/sec: 1649.74
//
Query:       KOO24934.1  [L=265]
Description: peptidase c14, partial [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    8.6e-41  137.2  12.5      2e-09   37.9   0.1    4.3  4  WD40            WD domain, G-beta repeat
    8.7e-14   51.2   2.2      0.013   14.5   0.1    4.1  4  Ge1_WD40        WD40 region of Ge1, enhancer of mRNA-decappin
    1.3e-10   41.4   1.4      0.062   13.6   0.1    4.1  4  ANAPC4_WD40     Anaphase-promoting complex subunit 4 WD40 dom
    2.1e-10   40.3   1.7       0.85    9.6   0.0    4.5  4  PD40            WD40-like Beta Propeller Repeat
    7.1e-06   25.6   1.4        0.3   10.4   0.0    3.4  4  Nbas_N          Neuroblastoma-amplified sequence, N terminal
    3.3e-05   22.4   0.0      0.015   13.6   0.0    2.8  3  Frtz            WD repeat-containing and planar cell polarity
     0.0016   18.0   2.4       0.94    8.9   0.2    3.4  3  rOmpB           Rickettsia outer membrane protein B
     0.0053   16.7   0.2        5.6    7.0   0.0    3.9  4  WD40_3          WD domain, G-beta repeat
  ------ inclusion threshold ------
      0.052   13.4   0.1        1.3    8.9   0.0    2.9  4  DUF4909         Domain of unknown function (DUF4909)
      0.092   12.7   0.1         23    4.9   0.0    3.2  4  P22_Tail-4      P22 tail accessory factor
      0.095   13.0   0.6        8.7    6.7   0.1    3.0  2  LigD_N          DNA polymerase Ligase (LigD)
       0.83   10.1   8.5         14    6.2   0.2    4.1  4  GluRS_N         Glutamate--tRNA ligase N-terminal domain
        1.2    8.9   7.1      1e+02    2.7   0.1    4.2  4  Proteasome_A_N  Proteasome subunit A N-terminal signature


Domain annotation for each model (and alignments):
>> WD40  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.2   0.3     5e-12     7e-09       8      38 .]      55      86 ..      49      86 .. 0.91
   2 !   31.8   0.1   1.2e-10   1.6e-07       9      37 ..      99     128 ..      92     129 .. 0.89
   3 !   37.6   0.3   1.8e-12   2.4e-09       8      38 .]     141     172 ..     135     172 .. 0.90
   4 !   37.9   0.1   1.5e-12     2e-09       8      38 .]     184     215 ..     178     215 .. 0.91

  Alignments for each domain:
  == domain 1  score: 36.2 bits;  conditional E-value: 5e-12
                ESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40  8 tGH.ssvtslafspdgawlasGsdDgtvriWd 38
                ++H ++++s+afspdg+ ++sGs D+t+++Wd
  KOO24934.1 55 DAHsDGIRSVAFSPDGTKIVSGSVDKTIKVWD 86
                58*666*************************9 PP

  == domain 2  score: 31.8 bits;  conditional E-value: 1.2e-10
                 SS.SSEEEEEEETTSSEEEEEETTSEEEEE CS
        WD40   9 GH.ssvtslafspdgawlasGsdDgtvriW 37 
                 +H  +++s+afspdg+ ++sGs D+t+++W
  KOO24934.1  99 AHsEWISSVAFSPDGTKIVSGSGDKTIKVW 128
                 89666****************99******* PP

  == domain 3  score: 37.6 bits;  conditional E-value: 1.8e-12
                 ESSSS.EEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40   8 tGHss.vtslafspdgawlasGsdDgtvriWd 38 
                 t+Hs+ + s+afspdg+ ++sGsdDgt+++Wd
  KOO24934.1 141 TAHSDtIGSVAFSPDGTKIVSGSDDGTIKVWD 172
                 79*556*************************9 PP

  == domain 4  score: 37.9 bits;  conditional E-value: 1.5e-12
                 ESSSS.EEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40   8 tGHss.vtslafspdgawlasGsdDgtvriWd 38 
                  +Hs+ ++s+afspdg+ +++GsdD+t+++Wd
  KOO24934.1 184 NAHSDyINSVAFSPDGTKIITGSDDKTIKVWD 215
                 489556*************************9 PP

>> Ge1_WD40  WD40 region of Ge1, enhancer of mRNA-decapping protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.1   0.0    0.0002      0.28     183     215 ..      53      86 ..      15      96 .. 0.83
   2 !    9.9   0.0   0.00023      0.31     185     215 ..      98     129 ..      86     143 .. 0.84
   3 !   14.5   0.1   9.5e-06     0.013     186     215 ..     142     172 ..     131     183 .. 0.86
   4 !   14.5   0.0   9.6e-06     0.013     185     218 ..     184     218 ..     172     225 .. 0.82

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.0002
    Ge1_WD40 183 kieehs.liveaafspdGtalatasedGevkffq 215
                 k + hs  i + afspdGt +   s d ++k + 
  KOO24934.1  53 KTDAHSdGIRSVAFSPDGTKIVSGSVDKTIKVWD 86 
                 55667667999********************985 PP

  == domain 2  score: 9.9 bits;  conditional E-value: 0.00023
    Ge1_WD40 185 eehs.liveaafspdGtalatasedGevkffq 215
                 + hs  i++ afspdGt +   s d ++k + 
  KOO24934.1  98 NAHSeWISSVAFSPDGTKIVSGSGDKTIKVWE 129
                 456656999********************985 PP

  == domain 3  score: 14.5 bits;  conditional E-value: 9.5e-06
    Ge1_WD40 186 ehs.liveaafspdGtalatasedGevkffq 215
                  hs +i + afspdGt +   s dG++k + 
  KOO24934.1 142 AHSdTIGSVAFSPDGTKIVSGSDDGTIKVWD 172
                 566589999*******************995 PP

  == domain 4  score: 14.5 bits;  conditional E-value: 9.6e-06
    Ge1_WD40 185 eehs.liveaafspdGtalatasedGevkffqvyl 218
                 + hs  i + afspdGt + t s d ++k + +  
  KOO24934.1 184 NAHSdYINSVAFSPDGTKIITGSDDKTIKVWDIIN 218
                 4566579999*********************9865 PP

>> ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.0   0.1   0.00014      0.19      33      81 ..      53     101 ..      26     107 .. 0.80
   2 !    9.2   0.0     0.001       1.4      34      80 ..      97     143 ..      91     147 .. 0.82
   3 !   13.6   0.1   4.5e-05     0.062      30      75 ..     128     181 ..     126     188 .. 0.79
   4 !    8.3   0.1    0.0021       2.9      34      70 ..     183     219 ..     177     243 .. 0.72

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 0.00014
  ANAPC4_WD40  33 eedkedsevrsLaWkpdgklLavaysdgevrlldaesgkvvhslsvkse 81 
                  ++d+++  +rs+a++pdg+ ++ +  d ++++ d+ + +++++ + +++
   KOO24934.1  53 KTDAHSDGIRSVAFSPDGTKIVSGSVDKTIKVWDSGKLELMSEKTNAHS 101
                  57889999**************************999988876655554 PP

  == domain 2  score: 9.2 bits;  conditional E-value: 0.001
  ANAPC4_WD40  34 edkedsevrsLaWkpdgklLavaysdgevrlldaesgkvvhslsvks 80 
                  ++++++ ++s+a++pdg+ ++ +  d ++++ ++ + +++++ ++++
   KOO24934.1  97 TNAHSEWISSVAFSPDGTKIVSGSGDKTIKVWESGKLELMSEKTTAH 143
                  56778889************************999988887665554 PP

  == domain 3  score: 13.6 bits;  conditional E-value: 4.5e-05
  ANAPC4_WD40  30 wtl........eedkedsevrsLaWkpdgklLavaysdgevrlldaesgkvvhs 75 
                  w+         ++++++ ++ s+a++pdg+ ++ + +dg++++ d+ + +++++
   KOO24934.1 128 WESgklelmseKTTAHSDTIGSVAFSPDGTKIVSGSDDGTIKVWDSGKLELMSE 181
                  5555555555567889999**************************988877665 PP

  == domain 4  score: 8.3 bits;  conditional E-value: 0.0021
  ANAPC4_WD40  34 edkedsevrsLaWkpdgklLavaysdgevrlldaesg 70 
                  +++++  ++s+a++pdg+ +  + +d ++++ d+ + 
   KOO24934.1 183 TNAHSDYINSVAFSPDGTKIITGSDDKTIKVWDIINW 219
                  56677889**********************9998653 PP

>> PD40  WD40-like Beta Propeller Repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.1   0.0   0.00092       1.3      11      24 ..      61      74 ..      56      74 .. 0.81
   2 !    9.6   0.0   0.00062      0.85       8      24 ..     101     117 ..      97     117 .. 0.82
   3 !    9.1   0.0   0.00089       1.2      12      24 ..     148     160 ..     141     160 .. 0.85
   4 !    8.3   0.0    0.0016       2.2      13      24 ..     192     203 ..     183     203 .. 0.83

  Alignments for each domain:
  == domain 1  score: 9.1 bits;  conditional E-value: 0.00092
                EEEEEE-TTSSEEE CS
        PD40 11 egaPsfSPDGkrla 24
                + + +fSPDG++++
  KOO24934.1 61 IRSVAFSPDGTKIV 74
                56779*******96 PP

  == domain 2  score: 9.6 bits;  conditional E-value: 0.00062
                 SS.EEEEEE-TTSSEEE CS
        PD40   8 pgnegaPsfSPDGkrla 24 
                 ++++ + +fSPDG++++
  KOO24934.1 101 SEWISSVAFSPDGTKIV 117
                 56677889*******96 PP

  == domain 3  score: 9.1 bits;  conditional E-value: 0.00089
                 EEEEE-TTSSEEE CS
        PD40  12 gaPsfSPDGkrla 24 
                 g+ +fSPDG++++
  KOO24934.1 148 GSVAFSPDGTKIV 160
                 6779*******96 PP

  == domain 4  score: 8.3 bits;  conditional E-value: 0.0016
                 EEEE-TTSSEEE CS
        PD40  13 aPsfSPDGkrla 24 
                 + +fSPDG++++
  KOO24934.1 192 SVAFSPDGTKII 203
                 569*******96 PP

>> Nbas_N  Neuroblastoma-amplified sequence, N terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.4   0.0   0.00022       0.3     210     266 ..      36      95 ..      25     103 .. 0.75
   2 ?    1.2   0.0      0.13   1.8e+02     226     263 ..      98     135 ..      89     143 .. 0.71
   3 !    8.0   0.1    0.0011       1.6     218     264 ..     132     179 ..     101     184 .. 0.75
   4 !    5.2   0.0     0.008        11     224     263 ..     182     221 ..     174     232 .. 0.80

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00022
      Nbas_N 210 krgllkllsl..klys.rkaeekdgvfkmslspdgtllavihfsgklsiwdipslkqrge 266
                 +++ l+++++  ++ + +++   dg+  +++spdgt++        + +wd   l++ +e
  KOO24934.1  36 RSSPLRMVAMliNFVAeKTDAHSDGIRSVAFSPDGTKIVSGSVDKTIKVWDSGKLELMSE 95 
                 55556665541144441455678***************************9888876655 PP

  == domain 2  score: 1.2 bits;  conditional E-value: 0.13
      Nbas_N 226 aeekdgvfkmslspdgtllavihfsgklsiwdipslkq 263
                 +   + +  +++spdgt++        + +w+   l++
  KOO24934.1  98 NAHSEWISSVAFSPDGTKIVSGSGDKTIKVWESGKLEL 135
                 455677888999*****998877777788888766655 PP

  == domain 3  score: 8.0 bits;  conditional E-value: 0.0011
      Nbas_N 218 slklysrk.aeekdgvfkmslspdgtllavihfsgklsiwdipslkqr 264
                 +l+l+s k +   d +  +++spdgt++      g + +wd   l++ 
  KOO24934.1 132 KLELMSEKtTAHSDTIGSVAFSPDGTKIVSGSDDGTIKVWDSGKLELM 179
                 455555441567899*************************98877665 PP

  == domain 4  score: 5.2 bits;  conditional E-value: 0.008
      Nbas_N 224 rkaeekdgvfkmslspdgtllavihfsgklsiwdipslkq 263
                 +++   d +  +++spdgt++ +      + +wdi    +
  KOO24934.1 182 KTNAHSDYINSVAFSPDGTKIITGSDDKTIKVWDIINWSR 221
                 45667899999*********9999999999****977655 PP

>> Frtz  WD repeat-containing and planar cell polarity effector protein Fritz
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.0   0.0    0.0046       6.3     262     291 ..      61      90 ..      54     129 .. 0.64
   2 !    9.0   0.0   0.00027      0.37     262     327 ..     104     172 ..      96     183 .. 0.69
   3 !   13.6   0.0   1.1e-05     0.015     246     329 ..     131     217 ..     120     245 .. 0.74

  Alignments for each domain:
  == domain 1  score: 5.0 bits;  conditional E-value: 0.0046
        Frtz 262 vislafnpdedkLllGceDssviLydeerk 291
                 + s+af+pd  k++ G+ D+++ ++d+ + 
  KOO24934.1  61 IRSVAFSPDGTKIVSGSVDKTIKVWDSGKL 90 
                 678899999999999999999999998643 PP

  == domain 2  score: 9.0 bits;  conditional E-value: 0.00027
        Frtz 262 vislafnpdedkLllGceDssviLydeerkitklv.kaev...vPsliswhpdsaillvasergelqifD 327
                 + s+af+pd  k++ G+ D+++ ++++ +   ++  k+     +   +++ pd++ ++ +s+ g ++++D
  KOO24934.1 104 ISSVAFSPDGTKIVSGSGDKTIKVWESGKLE-LMSeKTTAhsdTIGSVAFSPDGTKIVSGSDDGTIKVWD 172
                 5678899999999999999999998876432.22213222000234578888888888888888888888 PP

  == domain 3  score: 13.6 bits;  conditional E-value: 1.1e-05
        Frtz 246 nklqrvavtsiPlraqvislafnpdedkLllGceDssviLydeerkitklvkaevvP...sliswhpdsaillvasergelqifDla 329
                 +kl+ ++  +      + s+af+pd  k++ G+ D+++ ++d+ +      k++      + +++ pd++ ++ +s+   ++++D+ 
  KOO24934.1 131 GKLELMSEKTTAHSDTIGSVAFSPDGTKIVSGSDDGTIKVWDSGKLELMSEKTNAHSdyiNSVAFSPDGTKIITGSDDKTIKVWDII 217
                 5666666666666678899***********************976433333555554111457899*******************96 PP

>> rOmpB  Rickettsia outer membrane protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.2   0.0    0.0094        13      20      52 ..      47      79 ..      35      90 .. 0.84
   2 ?    1.9   0.0     0.094   1.3e+02      29      50 ..      99     120 ..      79     127 .. 0.79
   3 !    8.9   0.2   0.00068      0.94      21      53 ..     134     166 ..     121     204 .. 0.84

  Alignments for each domain:
  == domain 1  score: 5.2 bits;  conditional E-value: 0.0094
       rOmpB 20 vnlyatnitttdanvgslvfraggtsivsgtvg 52
                +n+ a++  +    + s+ f   gt+ivsg+v 
  KOO24934.1 47 INFVAEKTDAHSDGIRSVAFSPDGTKIVSGSVD 79
                6777777777777899**************995 PP

  == domain 2  score: 1.9 bits;  conditional E-value: 0.094
       rOmpB  29 ttdanvgslvfraggtsivsgt 50 
                 +    + s+ f   gt+ivsg+
  KOO24934.1  99 AHSEWISSVAFSPDGTKIVSGS 120
                 44556899************96 PP

  == domain 3  score: 8.9 bits;  conditional E-value: 0.00068
       rOmpB  21 nlyatnitttdanvgslvfraggtsivsgtvgg 53 
                 +l +++ t+    +gs+ f   gt+ivsg+  g
  KOO24934.1 134 ELMSEKTTAHSDTIGSVAFSPDGTKIVSGSDDG 166
                 6777788888899***************98665 PP

>> WD40_3  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.0   0.0    0.0041       5.6       6      23 ..      57      74 ..      56      80 .. 0.94
   2 ?   -0.1   0.0      0.69   9.5e+02       6      23 ..     100     117 ..      99     118 .. 0.90
   3 ?    1.7   0.0      0.19   2.6e+02       6      23 ..     143     160 ..     142     173 .. 0.87
   4 ?    1.6   0.0       0.2   2.8e+02       6      23 ..     186     203 ..     184     213 .. 0.89

  Alignments for each domain:
  == domain 1  score: 7.0 bits;  conditional E-value: 0.0041
      WD40_3  6 HsvgIkklfpnpsGtrlv 23
                Hs+gI+++   p+Gt++v
  KOO24934.1 57 HSDGIRSVAFSPDGTKIV 74
                9***************98 PP

  == domain 2  score: -0.1 bits;  conditional E-value: 0.69
      WD40_3   6 HsvgIkklfpnpsGtrlv 23 
                 Hs  I ++   p+Gt++v
  KOO24934.1 100 HSEWISSVAFSPDGTKIV 117
                 888899*********997 PP

  == domain 3  score: 1.7 bits;  conditional E-value: 0.19
      WD40_3   6 HsvgIkklfpnpsGtrlv 23 
                 Hs+ I ++   p+Gt++v
  KOO24934.1 143 HSDTIGSVAFSPDGTKIV 160
                 999*************98 PP

  == domain 4  score: 1.6 bits;  conditional E-value: 0.2
      WD40_3   6 HsvgIkklfpnpsGtrlv 23 
                 Hs+ I ++   p+Gt+++
  KOO24934.1 186 HSDYINSVAFSPDGTKII 203
                 9999************98 PP

>> DUF4909  Domain of unknown function (DUF4909)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.0       2.1   2.8e+03       7      25 ..      56      74 ..      53      85 .. 0.76
   2 ?   -0.3   0.0      0.63   8.7e+02       6      25 ..      98     117 ..      94     129 .. 0.80
   3 ?    8.9   0.0   0.00092       1.3       7      70 ..     142     208 ..     137     231 .. 0.68
   4 ?    0.7   0.0      0.32   4.4e+02       6      34 ..     184     213 ..     175     254 .. 0.76

  Alignments for each domain:
  == domain 1  score: -1.9 bits;  conditional E-value: 2.1
     DUF4909  7 qhnetigsiyfsadyahir 25
                 h + i s+ fs d ++i 
  KOO24934.1 56 AHSDGIRSVAFSPDGTKIV 74
                6899999999999988774 PP

  == domain 2  score: -0.3 bits;  conditional E-value: 0.63
     DUF4909   6 qqhnetigsiyfsadyahir 25 
                 + h e i s+ fs d ++i 
  KOO24934.1  98 NAHSEWISSVAFSPDGTKIV 117
                 5799*********9988774 PP

  == domain 3  score: 8.9 bits;  conditional E-value: 0.00092
     DUF4909   7 qhnetigsiyfsadyahi.rgiekgtakyf....idkvgskrylfieyipdnvlnckpdfwktlkykkd 70 
                  h +tigs+ fs d ++i  g + gt k +    ++ +  k     +yi  n +   pd  k +    d
  KOO24934.1 142 AHSDTIGSVAFSPDGTKIvSGSDDGTIKVWdsgkLELMSEKTNAHSDYI--NSVAFSPDGTKIITGSDD 208
                 799***********9987369999**99763222334455556666666..344455666665555555 PP

  == domain 4  score: 0.7 bits;  conditional E-value: 0.32
     DUF4909   6 qqhnetigsiyfsadyahi.rgiekgtaky 34 
                 + h + i s+ fs d ++i  g +  t k 
  KOO24934.1 184 NAHSDYINSVAFSPDGTKIiTGSDDKTIKV 213
                 568899999999999877526777666664 PP

>> P22_Tail-4  P22 tail accessory factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.0       3.1   4.3e+03      42      70 ..      48      76 ..      43      87 .. 0.74
   2 ?    0.3   0.0      0.45   6.2e+02      42      70 ..      91     119 ..      61     127 .. 0.83
   3 ?    4.9   0.0     0.017        23      42      76 ..     134     168 ..     130     174 .. 0.89
   4 ?    3.1   0.0     0.058        80      42      73 ..     177     209 ..     170     217 .. 0.84

  Alignments for each domain:
  == domain 1  score: -2.5 bits;  conditional E-value: 3.1
                HHHHHSSSGGSSSSSSEES-SSSSSSSSS CS
  P22_Tail-4 42 almaewqedgkdiitGykfaadeeepaed 70
                +++ae      d i    f++d++++ ++
  KOO24934.1 48 NFVAEKTDAHSDGIRSVAFSPDGTKIVSG 76
                56667666667777888999999888765 PP

  == domain 2  score: 0.3 bits;  conditional E-value: 0.45
                 HHHHHSSSGGSSSSSSEES-SSSSSSSSS CS
  P22_Tail-4  42 almaewqedgkdiitGykfaadeeepaed 70 
                 +lm e  +   + i+   f++d++++ ++
  KOO24934.1  91 ELMSEKTNAHSEWISSVAFSPDGTKIVSG 119
                 58999999999999999*****9998765 PP

  == domain 3  score: 4.9 bits;  conditional E-value: 0.017
                 HHHHHSSSGGSSSSSSEES-SSSSSSSSSSEE--- CS
  P22_Tail-4  42 almaewqedgkdiitGykfaadeeepaedddsGls 76 
                 +lm e  +   d i    f++d++++ ++ d G  
  KOO24934.1 134 ELMSEKTTAHSDTIGSVAFSPDGTKIVSGSDDGTI 168
                 589999999****9***************999965 PP

  == domain 4  score: 3.1 bits;  conditional E-value: 0.058
                 HHHHHSSSGGSSSSSSEES-SSSSSSSSS.SEE CS
  P22_Tail-4  42 almaewqedgkdiitGykfaadeeepaed.dds 73 
                 +lm e  +   d i    f++d++++ ++ dd+
  KOO24934.1 177 ELMSEKTNAHSDYINSVAFSPDGTKIITGsDDK 209
                 5899********************987762554 PP

>> LigD_N  DNA polymerase Ligase (LigD)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.6   0.1     0.058        80      65      85 ..      81     101 ..      48     161 .. 0.63
   2 ?    6.7   0.1    0.0063       8.7      56      86 ..     159     188 ..     137     239 .. 0.76

  Alignments for each domain:
  == domain 1  score: 3.6 bits;  conditional E-value: 0.058
                 EEEEEEEEEEEE..-HHHHHH CS
      LigD_N  65 svliwDtGtyeveeklaealk 85 
                 ++ +wD+G+ e  ++ ++a++
  KOO24934.1  81 TIKVWDSGKLELMSEKTNAHS 101
                 566777777777333222222 PP

  == domain 2  score: 6.7 bits;  conditional E-value: 0.0063
                 E-TTSTT-EEEEEEEEEEEEE..-HHHHHHH CS
      LigD_N  56 iekgeygaGsvliwDtGtyeveeklaealkk 86 
                 i +g+ + G++ +wD+G+ e  ++ ++a+++
  KOO24934.1 159 IVSGS-DDGTIKVWDSGKLELMSEKTNAHSD 188
                 55554.789**********995444444443 PP

>> GluRS_N  Glutamate--tRNA ligase N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.0   0.0     0.097   1.3e+02      14      43 ..      47      77 ..      35      80 .. 0.82
   2 ?    0.7   0.1      0.53   7.3e+02      15      43 ..      91     120 ..      86     126 .. 0.72
   3 ?    6.2   0.2      0.01        14      14      45 ..     133     165 ..     129     166 .. 0.86
   4 ?    2.5   0.2      0.14   1.9e+02      15      45 ..     177     208 ..     172     209 .. 0.80

  Alignments for each domain:
  == domain 1  score: 3.0 bits;  conditional E-value: 0.097
     GluRS_N 14 ieFvDdKkvdkadfdssvkL.tdggktivds 43
                i Fv +K+ + +d   sv+   dg k++++s
  KOO24934.1 47 INFVAEKTDAHSDGIRSVAFsPDGTKIVSGS 77
                89******999999999***77777777776 PP

  == domain 2  score: 0.7 bits;  conditional E-value: 0.53
     GluRS_N  15 eFvDdKkvdkadfdssvkL.tdggktivds 43 
                 e+  +K+ + ++  ssv+   dg k++++s
  KOO24934.1  91 ELMSEKTNAHSEWISSVAFsPDGTKIVSGS 120
                 555677777788889999966666666665 PP

  == domain 3  score: 6.2 bits;  conditional E-value: 0.01
     GluRS_N  14 ieFvDdKkvdkadfdssvkL.tdggktivdsed 45 
                 +e+  +K+ + +d+ +sv+   dg k++++s+d
  KOO24934.1 133 LELMSEKTTAHSDTIGSVAFsPDGTKIVSGSDD 165
                 5677799*************8888899999886 PP

  == domain 4  score: 2.5 bits;  conditional E-value: 0.14
     GluRS_N  15 eFvDdKkvdkadfdssvkL.tdggktivdsed 45 
                 e+  +K+ + +d   sv+   dg k+i++s+d
  KOO24934.1 177 ELMSEKTNAHSDYINSVAFsPDGTKIITGSDD 208
                 55557777777777789999999999999987 PP

>> Proteasome_A_N  Proteasome subunit A N-terminal signature
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.7   0.1     0.076     1e+02       7      12 ..      65      70 ..      62      71 .. 0.85
   2 ?    2.6   0.1     0.082   1.1e+02       7      12 ..     108     113 ..     105     114 .. 0.85
   3 ?    2.3   0.1     0.096   1.3e+02       8      12 ..     152     156 ..     149     157 .. 0.89
   4 ?    2.5   0.1     0.083   1.2e+02       8      12 ..     195     199 ..     191     200 .. 0.87

  Alignments for each domain:
  == domain 1  score: 2.7 bits;  conditional E-value: 0.076
  Proteasome_A_N  7 tFSPdG 12
                     FSPdG
      KOO24934.1 65 AFSPDG 70
                    5****9 PP

  == domain 2  score: 2.6 bits;  conditional E-value: 0.082
  Proteasome_A_N   7 tFSPdG 12 
                      FSPdG
      KOO24934.1 108 AFSPDG 113
                     5****9 PP

  == domain 3  score: 2.3 bits;  conditional E-value: 0.096
  Proteasome_A_N   8 FSPdG 12 
                     FSPdG
      KOO24934.1 152 FSPDG 156
                     ****9 PP

  == domain 4  score: 2.5 bits;  conditional E-value: 0.083
  Proteasome_A_N   8 FSPdG 12 
                     FSPdG
      KOO24934.1 195 FSPDG 199
                     ****9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (265 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       581  (0.0324056); expected 358.6 (0.02)
Passed bias filter:                      420  (0.0234257); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                        13  (0.000725082); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 0.51u 0.30s 00:00:00.81 Elapsed: 00:00:00.42
# Mc/sec: 1894.08
//
Query:       KOO24935.1  [L=14]
Description: hypothetical protein Ctob_003761 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (14 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                        17  (0.000948185); expected 358.6 (0.02)
Passed bias filter:                       16  (0.000892409); expected 358.6 (0.02)
Passed Vit filter:                         1  (5.57756e-05); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.18s 00:00:00.49 Elapsed: 00:00:00.35
# Mc/sec: 118.76
//
Query:       KOO24936.1  [L=139]
Description: hypothetical protein Ctob_003766 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.39   10.8   2.9       0.52   10.4   0.3    2.0  2  PRIMA1    Proline-rich membrane anchor 1


Domain annotation for each model (and alignments):
>> PRIMA1  Proline-rich membrane anchor 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.3   2.9e-05      0.52      21      73 ..      13      66 ..       1      80 [. 0.44
   2 ?    0.9   0.2     0.025   4.5e+02      24      47 ..      87     110 ..      82     117 .. 0.73

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 2.9e-05
      PRIMA1 21 cqcrrypplpppppppppprllsltaaestvsple..pwwse.lviiiavvcaslv 73
                ++   +pp pppp p  +   +++t++ s   +        e ++++i   c  + 
  KOO24936.1 13 ANAMMEPPSPPPPAPAESGY-VTSTVS-SVLFQFVvlLQQPElVLVLIGGLCGWIY 66
                44444555554444433322.233333.3322222112233334445555565544 PP

  == domain 2  score: 0.9 bits;  conditional E-value: 0.025
      PRIMA1  24 rrypplpppppppppprllsltaa 47 
                 r++pp     p p  p +l +++a
  KOO24936.1  87 RAPPPTRQFVPLPAQPYVLHSKVA 110
                 677777777777777887777766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (139 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       428  (0.0238719); expected 358.6 (0.02)
Passed bias filter:                      286  (0.0159518); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.25s 00:00:00.64 Elapsed: 00:00:00.40
# Mc/sec: 1031.02
//
Query:       KOO24937.1  [L=643]
Description: heterogeneous nuclear ribonucleoprotein h [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    8.5e-34  115.2   0.0    1.8e-08   34.1   0.0    4.3  4  RRM_1     RNA recognition motif. (a.k.a. RRM, RBD, or RNP dom
  ------ inclusion threshold ------
      0.089   12.3   0.0         13    5.2   0.0    3.1  3  DUF4283   Domain of unknown function (DUF4283)
       0.22   11.6   0.0        2.5    8.2   0.0    2.6  3  RRM_3     RNA binding motif


Domain annotation for each model (and alignments):
>> RRM_1  RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.8   0.0     1e-08   6.1e-05       2      68 ..     159     228 ..     158     230 .. 0.85
   2 !   32.9   0.0     7e-12   4.2e-08       2      68 ..     271     339 ..     270     341 .. 0.91
   3 !   34.1   0.0   3.1e-12   1.8e-08       3      69 ..     413     479 ..     411     480 .. 0.93
   4 !   20.5   0.0   5.4e-08   0.00032       2      69 ..     572     638 ..     571     639 .. 0.91

  Alignments for each domain:
  == domain 1  score: 22.8 bits;  conditional E-value: 1e-08
                 EEESETTTSSHHHHHHHHHT.TSCEEEEEEEEE...TTTSEEEEEEEEESSHHHHHHHHHHHTTEEETTEE CS
       RRM_1   2 fVgnLppdvteeeLkelFsk.fGpiksiklvrd...etgkskgfafVeFeskedAekAlealngkklggre 68 
                  +++Lp+++te+e+ ++F    G+ + ++ v      tg++ g a+Ve ++  +Ae+A+++ln++ +g r 
  KOO24937.1 159 RLRGLPFSATEQEVAQWFASaPGSPQQARRVIFtynTTGRKSGEAYVELPDM-AAERAVQSLNHRHMGTRY 228
                 5789****************5566677766555589**************96.79*********9988776 PP

  == domain 2  score: 32.9 bits;  conditional E-value: 7e-12
                 EEESETTTSSHHHHHHHHHTTSCEEEEEEEEE...TTTSEEEEEEEEESSHHHHHHHHHHHTTEEETTEE CS
       RRM_1   2 fVgnLppdvteeeLkelFskfGpiksiklvrd...etgkskgfafVeFeskedAekAlealngkklggre 68 
                  +++Lp+++t e++ ++F+++   k +  v+     +g+++g afVeF+s+e A++Al+  ++ ++g r 
  KOO24937.1 271 RLRGLPFNTTAEMILAFFQGYDAPKGLHGVHLilgPNGRPNGEAFVEFASEEVADAALN-KDRATIGTRY 339
                 5789******************9999888888888************************.9998888776 PP

  == domain 3  score: 34.1 bits;  conditional E-value: 3.1e-12
                 EESETTTSSHHHHHHHHHTTSCE.EEEEEEEETTTSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEE CS
       RRM_1   3 VgnLppdvteeeLkelFskfGpi.ksiklvrdetgkskgfafVeFeskedAekAlealngkklggrel 69 
                 +++Lp+ vt++++ ++Fs+f    + + l+ +e+++++g a+VeF s +d e+A++  +++ +ggr +
  KOO24937.1 413 MRGLPYKVTRNDILDFFSGFSVPlNGVHLIFNEREQPTGEAYVEFSSADDRERAMS-KDRQHIGGRYV 479
                 789****************9966599******************************.9*999999976 PP

  == domain 4  score: 20.5 bits;  conditional E-value: 5.4e-08
                 EEESETTTSSHHHHHHHHHTTSCEEEEEEEEETTTSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEE CS
       RRM_1   2 fVgnLppdvteeeLkelFskfGpiksiklvrdetgkskgfafVeFeskedAekAlealngkklggrel 69 
                  ++++p+  t e++ ++F +f  +    ++ +++g++ g +fV+F+s+ +A++A   +n+k +g r +
  KOO24937.1 572 RMRGIPFRSTVEDVMRFFAGFQVVPGGVVIGQRDGRASGDCFVTFTSPAEAQRATI-MNNKHMGTRYI 638
                 57899999999*************88888888************************.**999998876 PP

>> DUF4283  Domain of unknown function (DUF4283)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.7   0.0     0.014        82     100     127 ..     158     185 ..     155     194 .. 0.91
   2 ?   -1.1   0.0      0.21   1.2e+03      52      84 ..     315     347 ..     311     354 .. 0.83
   3 ?    5.2   0.0    0.0022        13      51      82 ..     453     484 ..     444     491 .. 0.86

  Alignments for each domain:
  == domain 1  score: 2.7 bits;  conditional E-value: 0.014
     DUF4283 100 vrlpglPlelwseevlskiasavGkple 127
                 vrl+glP+    +ev ++ asa G p +
  KOO24937.1 158 VRLRGLPFSATEQEVAQWFASAPGSPQQ 185
                 99********************999876 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 0.21
     DUF4283  52 lfrfsseedlekvleggpwlingkplilkrwsp 84 
                  ++f+see ++ +l++   +i+++++ + r +p
  KOO24937.1 315 FVEFASEEVADAALNKDRATIGTRYVEVFRATP 347
                 589*****************9999887766555 PP

  == domain 3  score: 5.2 bits;  conditional E-value: 0.0022
     DUF4283  51 flfrfsseedlekvleggpwlingkplilkrw 82 
                  +++fss +d+e+++++   +i+g+++ l r 
  KOO24937.1 453 AYVEFSSADDRERAMSKDRQHIGGRYVELFRV 484
                 579*********************99887665 PP

>> RRM_3  RNA binding motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.0      0.31   1.9e+03       3      57 ..     269     331 ..     268     342 .. 0.60
   2 ?    8.2   0.0   0.00042       2.5       3      57 ..     410     470 ..     409     483 .. 0.83
   3 ?   -1.8   0.0      0.56   3.3e+03       4      53 ..     571     625 ..     568     633 .. 0.59

  Alignments for each domain:
  == domain 1  score: -1.0 bits;  conditional E-value: 0.31
                 EEEEEE-SSS--HHHHHHHCHCCS......-ECEEEE-TT..SSEEEEEESSHHHHHHHHHHH CS
       RRM_3   3 ilklsGlnkelsredikellsklg......evayvdyekg..dkegevrFkedeeakkaleka 57 
                 i+ l Gl  +++ e i  +++ ++       v+ +   +g  + e+ v F+++e a +al+k 
  KOO24937.1 269 IVRLRGLPFNTTAEMILAFFQGYDapkglhGVHLILGPNGrpNGEAFVEFASEEVADAALNKD 331
                 566666666666666666666666554444444444444411345568888888888888775 PP

  == domain 2  score: 8.2 bits;  conditional E-value: 0.00042
                 EEEEEE-SSS--HHHHHHHCHCCS......-ECEEEE-TTSSEEEEEESSHHHHHHHHHHH CS
       RRM_3   3 ilklsGlnkelsredikellsklg......evayvdyekgdkegevrFkedeeakkaleka 57 
                 ++k+ Gl  +++r+di +++s ++      ++ + + e+   e++v F ++++ ++a+ k 
  KOO24937.1 410 VVKMRGLPYKVTRNDILDFFSGFSvplngvHLIFNEREQPTGEAYVEFSSADDRERAMSKD 470
                 79**********************988844444555566667889********99999875 PP

  == domain 3  score: -1.8 bits;  conditional E-value: 0.56
                 EEEEE-SSS--HHHHHHHCHCCS-E...CEEEE-TTSSEE..EEEESSHHHHHHH CS
       RRM_3   4 lklsGlnkelsredikellsklgev...ayvdyekgdkeg..evrFkedeeakka 53 
                 l + G+   +++ed+  +++ +  v     ++  +g ++g   v F ++ ea++a
  KOO24937.1 571 LRMRGIPFRSTVEDVMRFFAGFQVVpggVVIGQRDGRASGdcFVTFTSPAEAQRA 625
                 5566666666666666666666644221235555555554115888888888887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (643 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       480  (0.0267723); expected 358.6 (0.02)
Passed bias filter:                      346  (0.0192983); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.55u 0.26s 00:00:00.81 Elapsed: 00:00:00.41
# Mc/sec: 4724.69
//
Query:       KOO24938.1  [L=471]
Description: serine carboxypeptidase-like 20-like protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.6e-77  261.7   0.0      2e-77  261.4   0.0    1.1  1  Peptidase_S10  Serine carboxypeptidase


Domain annotation for each model (and alignments):
>> Peptidase_S10  Serine carboxypeptidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  261.4   0.0   1.1e-81     2e-77      26     417 ..       2     466 ..       1     468 [. 0.87

  Alignments for each domain:
  == domain 1  score: 261.4 bits;  conditional E-value: 1.1e-81
                    EEEEEEE-SSGTTTS-EEEEE--TTTB-THHHHHHTTSSEEEE....TTTTSEEEE-TT-GGGCSEEEEE--STTSTT-EETTSSG.S--SHHHHH CS
  Peptidase_S10  26 lFYwfveseknpeedplvlWLnGGPGCsSldGlleElGPfrvn....kdstkkleenpysWnkvanvlfldqPvGvGFSysntksd.vktddeeva 116
                    l+Y++ e+  +p ++plvlWLnGGPG+sSl+G+++E+G + +n    ++s +kl++np++W+ +an+l+l+ P+GvGFSy  + +d  + +d+++a
     KOO24938.1   2 LHYYLQEADASPLDKPLVLWLNGGPGASSLIGAFTEMGQLIFNrdsaAESPPKLFRNPFAWTTLANMLYLEVPAGVGFSYCVDPADpCHNSDTSTA 97 
                    8******************************************7777566799****************************99999999******* PP

                    HHHHHHHHHHHHHSTCGTTSEEEEEEETTHHHHHHHHHHHHHTHCCH--SSTSEEEEEEEESE-SBHHHHHCCHHH.............HHHHTTS CS
  Peptidase_S10 117 edlyefLkkffekfpeyksrdfyitGESYaGhyvPalakeilkknkkekkkkinLkGlligNglideaeqvnsyve.............fayehgl 199
                    e+++e+L  f+e+fpeyksr+fy+tGESYaG+y P+l++ ilk+         n +Gl+igNg+   +  +n                 ++ ++gl
     KOO24938.1  98 EQNHEALLGFLERFPEYKSRPFYLTGESYAGIYLPTLMELILKRGAI-----TNVRGLAIGNGCWGTQAGTNCGDVtgqpgttwkidaeYFAGRGL 188
                    *******************************************9965.....7***********99998888654468899*************** PP

                    SHHHHHHHHHHHHEETHHHHHHHHHHHHHHHHHHHHHHHHHCHCEETTETTSEETTSSEE.................................... CS
  Peptidase_S10 200 iseeeyeslkkacekkeeleqesekcanllekaskvavekenkglnvynileeccklkae.................................... 259
                    is    e  + ac   e +++ + +c+++ +++s+       +++n+ n+   c k+  +                                    
     KOO24938.1 189 ISPALKEAADAACG--EWIDPLTPTCKEAYDAISEA-----LGEFNIDNVDDFCAKT--Npvtlksfralggrfarftarftaalpadgsadlpaa 275
                    ***99999999995..46999999999999999873.....4566776666666442..12356678999999999******************** PP

                    ........................HHHCTTCCCCTTTTTCHHHHHHHHTSHHHHHHTT--.TTSSS--SB-HHHHHHCTCCC-SBCHHHHHHHHHT CS
  Peptidase_S10 260 ........................lkksstdaqggedpydesyvekylnkkeVrkalhvn.asvkkweecndsvfeqleddisksveeileelles 330
                                             +      + ++++  e++++++   +eV  a+hv+ ++  + ++       + ++    ++++++++l ++
     KOO24938.1 276 arttsgdaaaiefgspdswsaeggDEADPPVGEVQMWCGAEAALRTWRLLPEVAVAMHVTlER--NITSIYGLQRGFRYTIEPLDLSPLYRQLADT 369
                    *********************997444445678899**********************98533..3333333224456666667899999999987 PP

                    T.-EEEEEEETT-STT-HHHHHHHHHHTECTTECCSCCCEEEE....TTTCESEEEEEEEE......TTEEEEEETT--SSHHHHSHHHHHHHHHH CS
  Peptidase_S10 331 g.lrvliynGdvDlicnvlgteawikklelsgkkefrpwevsp....kkengqvaGyvkey......enltfltvkgaGHmvPedkpeealqller 415
                      l +liynG+ D+ +++ g+ +   k ++++ +e++pw++          g+v G v++y      + ++f+t+ gaGH+vP+++p++al++l++
     KOO24938.1 370 AgLGFLIYNGQSDANVPYNGQVQYWAK-NYTVLEEYKPWYKDRqlsqAVAAGHVRGHVRTYatqtagKTFQFVTIGGAGHEVPTYRPSAALTMLQK 464
                    66******************9887776.899*********98766666667777777888888876445*************************** PP

                    HH CS
  Peptidase_S10 416 fi 417
                    f+
     KOO24938.1 465 FV 466
                    98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (471 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       306  (0.0170673); expected 358.6 (0.02)
Passed bias filter:                      276  (0.0153941); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.26s 00:00:00.75 Elapsed: 00:00:00.42
# Mc/sec: 3365.05
//
Query:       KOO24939.1  [L=295]
Description: hypothetical protein Ctob_003765 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
  ------ inclusion threshold ------
      0.037   14.1   0.0      0.063   13.4   0.0    1.4  1  Phage_TAC_9  Phage tail assemb.y chaperone protein, TAC


Domain annotation for each model (and alignments):
>> Phage_TAC_9  Phage tail assemb.y chaperone protein, TAC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.0   3.5e-06     0.063      85     122 ..      51      89 ..      25      98 .. 0.79

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 3.5e-06
  Phage_TAC_9  85 pdrlnehfntrrs.hllrvlieGlkyqfaDflvGGvaal 122
                   dr+  hfn++ +   + vl eGl y++a+++v    ++
   KOO24939.1  51 IDRVLTHFNKKTTtADYSVLYEGLDYNLAEYFVRVRDLV 89 
                  589999***98761569***************9665555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (295 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       450  (0.025099); expected 358.6 (0.02)
Passed bias filter:                      344  (0.0191868); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.24s 00:00:00.67 Elapsed: 00:00:00.39
# Mc/sec: 2268.59
//
Query:       KOO24940.1  [L=1136]
Description: hypothetical protein Ctob_006578, partial [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.2e-05   23.9   0.0    4.4e-05   22.9   0.0    1.4  1  ADPrib_exo_Tox  ADP-ribosyltransferase exoenzyme
    0.00018   20.8   0.0    0.00039   19.8   0.0    1.4  1  ART             NAD:arginine ADP-ribosyltransferase
  ------ inclusion threshold ------
       0.03   14.4  16.5       0.93    9.7   0.0    7.0  7  LRR_6           Leucine Rich repeat


Domain annotation for each model (and alignments):
>> ADPrib_exo_Tox  ADP-ribosyltransferase exoenzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.9   0.0   7.3e-09   4.4e-05      55     162 ..     384     491 ..     370     509 .. 0.74

  Alignments for each domain:
  == domain 1  score: 22.9 bits;  conditional E-value: 7.3e-09
                     HHHHHHHHHHCCT-.B-SS-EEEEEEE-GGGG-HHHHTT-HHHHHHHHHHHTT-EEEESS-EEEESSSS.SCCCTTT......SEEEEEEE-TT. CS
  ADPrib_exo_Tox  55 ekkiknldsaleks.ripeniivYRrvdeaelgleldskneekvsefeakvkgkvfkergyvSTslvkdtaasfggr......eilleltvpkg. 141
                       + + ++s++ k  ++++ i+vYR+    +l +        ++  + + +  +   e++++ST+  + +a +++ +      ++ + ++v++g 
      KOO24940.1 384 TTTLHAINSSIIKLgKLTKAIKVYRGIAGMKLPS--------EFW-IPNEFGVRGGVEKAFMSTTTEQAVAMGYASDgrgekaSMGIVIEVQQGm 469
                     455678899998888***********96666533........333.3457778889999*********965555554555545555667777774 PP

                     .SBEEE-CCCSSSGCG-EEEE- CS
  ADPrib_exo_Tox 142 .segayisplslypgeaEvLlp 162
                      + ga+is ls+yp e E+L+ 
      KOO24940.1 470 vNRGADISRLSQYPHEREILFG 491
                     479*****************96 PP

>> ART  NAD:arginine ADP-ribosyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.8   0.0   6.5e-08   0.00039     100     207 ..     381     505 ..     369     513 .. 0.79

  Alignments for each domain:
  == domain 1  score: 19.8 bits;  conditional E-value: 6.5e-08
         ART 100 fdfkalhfyLtraLqlLrkdsqrcsqvyRgvkglrfsra...kkgksvRfg...qFtssslkkkvae.........efgqdtllsiktcl...gvpIke 180
                 +++ +   ++ +++ +L k   ++ +vyRg+ g+++       ++  vR g   +F+s+ +++ va          +   +++++++  +   g++I  
  KOO24940.1 381 NKYTTTLHAINSSIIKLGK-LTKAIKVYRGIAGMKLPSEfwiPNEFGVRGGvekAFMSTTTEQAVAMgyasdgrgeKASMGIVIEVQQGMvnrGADISR 478
                 5677777788999999999.899999******88774321112233588765558***********9999998887777889999987654559***** PP

         ART 181 fskfpsedevLIppfevFkvtnlskee 207
                 +s++p+e+e+L  p++  +v +++ ++
  KOO24940.1 479 LSQYPHEREILFGPLTGIEVLRTRIDG 505
                 *****************9999977655 PP

>> LRR_6  Leucine Rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.0       1.3     8e+03      18      24 .]     612     618 ..     611     618 .. 0.89
   2 ?    1.5   0.0     0.067     4e+02       2      20 ..     837     855 ..     836     857 .. 0.92
   3 ?    4.6   0.0    0.0069        41       6      19 ..     878     891 ..     876     896 .. 0.83
   4 ?    2.0   0.2     0.045   2.7e+02       2      24 .]     932     954 ..     931     954 .. 0.86
   5 ?    9.7   0.0   0.00016      0.93       4      23 ..     997    1016 ..     997    1017 .. 0.90
   6 ?    0.8   0.1      0.11   6.6e+02       2      12 ..    1069    1079 ..    1068    1080 .. 0.89
   7 ?    0.6   0.3      0.13     8e+02       2      12 ..    1126    1136 .]    1125    1136 .] 0.88

  Alignments for each domain:
  == domain 1  score: -2.5 bits;  conditional E-value: 1.3
       LRR_6  18 eGaeaLa 24 
                 eG++aLa
  KOO24940.1 612 EGLKALA 618
                 9*****8 PP

  == domain 2  score: 1.5 bits;  conditional E-value: 0.067
       LRR_6   2 nthLteLdLsgNdIgDeGa 20 
                 ++++t+L+ +g d++  Ga
  KOO24940.1 837 SPSVTSLSFKGTDLTANGA 855
                 5799***********9997 PP

  == domain 3  score: 4.6 bits;  conditional E-value: 0.0069
       LRR_6   6 teLdLsgNdIgDeG 19 
                  ++d++gN++g eG
  KOO24940.1 878 ATVDVRGNNLGVEG 891
                 589*********99 PP

  == domain 4  score: 2.0 bits;  conditional E-value: 0.045
       LRR_6   2 nthLteLdLsgNdIgDeGaeaLa 24 
                 +t++te +L+gN+++ e a+ La
  KOO24940.1 932 STTITECNLRGNNLDCESAKVLA 954
                 6899999*******988888876 PP

  == domain 5  score: 9.7 bits;  conditional E-value: 0.00016
       LRR_6    4 hLteLdLsgNdIgDeGaeaL 23  
                  +Lt  dL+gN+I+++ a  L
  KOO24940.1  997 SLTRIDLRGNKITGDSAAQL 1016
                  69*************99887 PP

  == domain 6  score: 0.8 bits;  conditional E-value: 0.11
       LRR_6    2 nthLteLdLsg 12  
                  +t+L +LdLsg
  KOO24940.1 1069 STSLSTLDLSG 1079
                  799******97 PP

  == domain 7  score: 0.6 bits;  conditional E-value: 0.13
       LRR_6    2 nthLteLdLsg 12  
                  +t+L +LdLsg
  KOO24940.1 1126 STSLSTLDLSG 1136
                  799******96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1136 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       507  (0.0282782); expected 358.6 (0.02)
Passed bias filter:                      343  (0.019131); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.67u 0.29s 00:00:00.96 Elapsed: 00:00:00.42
# Mc/sec: 8173.22
//
Query:       KOO24941.1  [L=278]
Description: hypothetical protein Ctob_006572 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (278 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       381  (0.0212505); expected 358.6 (0.02)
Passed bias filter:                      303  (0.0169); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.40u 0.25s 00:00:00.65 Elapsed: 00:00:00.39
# Mc/sec: 2153.78
//
Query:       KOO24942.1  [L=209]
Description: hypothetical protein Ctob_006573 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
  ------ inclusion threshold ------
       0.22   11.1   2.1       0.28   10.8   2.1    1.2  1  CCDC84         Coiled coil protein 84
        5.4    7.7  13.0       0.18   12.4   6.0    2.1  2  Ribosomal_60s  60s Acidic ribosomal protein


Domain annotation for each model (and alignments):
>> CCDC84  Coiled coil protein 84
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   2.1   3.1e-05      0.28     113     258 ..      16     162 ..       3     195 .. 0.50

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 3.1e-05
      CCDC84 113 seedvekfkkkvekdlesteekedefekeeaasiketesnrvevlqslleeeaqises.lgsl.aelletrkqqsalleslkesaskkstleestsvlq 209
                 + e++ +   + ++  e+ ++  + +++++a++i+ +  ++ + +q+ lee +++ ++ + +l  +  +++++ ++ll++    a+k       ++v++
  KOO24942.1  16 LGENAVRATIEFANVTETAVDLHEVVIADKAQEIEIEDPEQDKTIQTELEEIKEVISTrATELwRSAQQWFSTSRSLLKESY-AAKKVAMGPVLQTVSE 113
                 5555555555666666777777777777777777777777777777777776666555422222222333433333333333.2222222222233333 PP

      CCDC84 210 npkgshqqagssvaksaeevtqlssgeeltfissqdaaskgNvhtgAtP 258
                 +  + ++ +++++++ +++++q +++  l+ ++ q  a++  + + AtP
  KOO24942.1 114 HALQLKEDTAVRASTLVTSLKQGAATRTLSDVTNQLVAQTQILSASATP 162
                 3344444444444444444444444444444444444433333333333 PP

>> Ribosomal_60s  60s Acidic ribosomal protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.6      0.42   3.8e+03      32      32 ..      57      57 ..      20      84 .. 0.64
   2 ?   12.4   6.0     2e-05      0.18      20      71 ..     123     179 ..     116     183 .. 0.71

  Alignments for each domain:
  == domain 1  score: -1.5 bits;  conditional E-value: 0.42
                   X CS
  Ribosomal_60s 32 g 32
                   +
     KOO24942.1 57 D 57
                   2 PP

  == domain 2  score: 12.4 bits;  conditional E-value: 2e-05
                    XXXXXXXXXXXXXXXXXXXXXXXXXXXX.....XXXXXXXXXXXXXXXXXXXXXXXX CS
  Ribosomal_60s  20 aarvkllvkalegkdieellangaakla.....aaaaaaaaaaaaaaaaaaaeekkk 71 
                    a+r+++lv++l++   +  l++++++l+      +a+a+ aa++a+a aaa +ek k
     KOO24942.1 123 AVRASTLVTSLKQGAATRTLSDVTNQLVaqtqiLSASATPAAQKAKANAAAVAEKMK 179
                    78999*******999999999999999899988444444444444444444444443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (209 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1717  (0.0957666); expected 358.6 (0.02)
Passed bias filter:                      607  (0.0338558); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.46u 0.23s 00:00:00.69 Elapsed: 00:00:00.41
# Mc/sec: 1546.96
//
Query:       KOO24943.1  [L=138]
Description: fkbp-type peptidylprolyl cis-trans isomerase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.2e-29  100.7   0.0    6.4e-29  100.1   0.0    1.3  1  FKBP_C    FKBP-type peptidyl-prolyl cis-trans isomerase
  ------ inclusion threshold ------
      0.036   15.0   1.0      0.054   14.4   1.0    1.3  1  FKBP_N    Domain amino terminal to FKBP-type peptidyl-prolyl 


Domain annotation for each model (and alignments):
>> FKBP_C  FKBP-type peptidyl-prolyl cis-trans isomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  100.1   0.0   7.1e-33   6.4e-29       2      94 .]      47     135 ..      45     135 .. 0.96

  Alignments for each domain:
  == domain 1  score: 100.1 bits;  conditional E-value: 7.1e-33
                 SCBB-TTCEEEEEEEEEETTSSEEEEHCCHTSEEEEETTSSSSCHHHHHHHTTSBTT-EEEEEEEGGGTTTTTTBCTTTB.TTSEEEEEEEEE CS
      FKBP_C   2 keeakegdtVtvhykgkledgkvfdssrsrakplefkvGsgqvikGfeealegmkvGekrtltippelaYgekglaggvippnatLvFeveLl 94 
                 k+ +++ dtV+v+y+g+l dg+vfdss++r++ ++f +    vi G+ e+l+ mkvG+k+ ltipp+ aYg++g  ++vipp+atLvF+veLl
  KOO24943.1  47 KS-PTREDTVEVNYEGTLVDGTVFDSSYKRGESISFPLS--GVIAGWTEGLQLMKVGGKALLTIPPDIAYGDRGS-PPVIPPKATLVFTVELL 135
                 44.999********************************9..7*********************************.88*************97 PP

>> FKBP_N  Domain amino terminal to FKBP-type peptidyl-prolyl isomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.4   1.0   6.1e-06     0.054      59      94 ..       2      37 ..       1      39 [. 0.90

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 6.1e-06
      FKBP_N 59 qekqeeeaeknkaegeaFlaenkkkeGVkttesGLq 94
                +++ +++ e+++aeg++ l++ ++++G ++t+sGL 
  KOO24943.1  2 RARDKAKEEAAAAEGAEALKKAASEPGATQTKSGLV 37
                5667889999************************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (138 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       287  (0.0160076); expected 358.6 (0.02)
Passed bias filter:                      219  (0.0122148); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.37u 0.23s 00:00:00.60 Elapsed: 00:00:00.38
# Mc/sec: 1081.72
//
Query:       KOO24944.1  [L=376]
Description: flagellar associated protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (376 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       920  (0.0513135); expected 358.6 (0.02)
Passed bias filter:                      535  (0.0298399); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.52u 0.27s 00:00:00.79 Elapsed: 00:00:00.43
# Mc/sec: 2606.69
//
Query:       KOO24945.1  [L=869]
Description: hypothetical protein Ctob_006576 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (869 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       272  (0.015171); expected 358.6 (0.02)
Passed bias filter:                      207  (0.0115455); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.58u 0.27s 00:00:00.85 Elapsed: 00:00:00.43
# Mc/sec: 6096.12
//
Query:       KOO24946.1  [L=95]
Description: hypothetical protein Ctob_006577 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (95 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       246  (0.0137208); expected 358.6 (0.02)
Passed bias filter:                      225  (0.0125495); expected 358.6 (0.02)
Passed Vit filter:                         9  (0.00050198); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.24s 00:00:00.59 Elapsed: 00:00:00.39
# Mc/sec: 736.45
//
Query:       KOO24947.1  [L=657]
Description: pepsin b-like protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    5.9e-24   85.1   0.2    1.6e-14   54.0   0.1    2.4  2  Asp             Eukaryotic aspartyl protease
    1.9e-06   27.9   0.0    4.4e-06   26.7   0.0    1.6  1  NYN_YacP        YacP-like NYN domain
    4.2e-05   23.9   4.1    0.00034   20.9   1.1    3.1  2  TAXi_N          Xylanase inhibitor N-terminal
     0.0026   18.3   0.1       0.41   11.3   0.0    3.5  3  Asp_protease_2  Aspartyl protease
     0.0035   17.1   0.0      0.026   14.3   0.0    2.2  2  TAXi_C          Xylanase inhibitor C-terminal


Domain annotation for each model (and alignments):
>> Asp  Eukaryotic aspartyl protease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.0   0.1   4.6e-18   1.6e-14       2     116 ..      42     164 ..      41     181 .. 0.80
   2 !   28.7   0.0   2.3e-10   8.4e-07     194     314 ..     321     438 ..     291     439 .. 0.74

  Alignments for each domain:
  == domain 1  score: 54.0 bits;  conditional E-value: 4.6e-18
                 EEEEEEETTTTEEEEEEEETT--SEEEEBTTESTSHCHHTSS-B-GGG-TT-EEEEEEE.EEECTTSEEEEEEEEEEEEE.......TTE.EEEEEEEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxx.......xxx.xxxxxxxx RF
         Asp   2 YfgeisiGtpeqkftvifDTGSsdlWVpsskckkssackshstydpskSstykkngksl.sisYGdgsvsGflsqdtvkv.......ggl.tvknqefg 91 
                 Y ++++iGtp+q  + + DTGS +l V+s+ c+ ++ac++h  y+ ++S++++++g++  ++sYG+g v    + +tv++       g + + ++ +++
  KOO24947.1  42 YTASLGIGTPPQMVRAVPDTGSYNLVVTSTMCD-THACRTHMRYNIKSSTSFEAQGNATyTLSYGQGDVVVKDALETVTFfptltgeGAIaSHHHVDVQ 139
                 999*****************************9.89*****************87765559******99999999999984333321111123445666 PP

                 EEEEESSHHHTTSSSSEEEE-S-GG CS
                 xxxxxxxxxxxxxxxxxxxxxxxxx RF
         Asp  92 eatkepgstflaakfdGiLGlgfke 116
                 + ++++   f+ a+fd iLGlg ++
  KOO24947.1 140 LIQEQQLMHFAGAAFDSILGLGKRN 164
                 77777777888888*******9544 PP

  == domain 2  score: 28.7 bits;  conditional E-value: 2.3e-10
                 EEEEEEEEEEETTCSSEEEEHHHHHHHHHHHTTEEEETTCEEEEETTGGGGSEEEEEEETTEEEE.EEGGGGEEEESSSTTSEEEESE....EECCTSS CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxx....xxxxxxx RF
         Asp 194 lcssgcqailDtGTsllalptsivekiakaigakksesegeyvvdCdslsslpdisftiggakit.vpvselvlkeeeseesqCilgl....vseeegd 287
                 + +  c+ai+D+GT+ll++pt++ +++  +++a  +++     ++C +  +++d   t +g  ++ +p   +++  ++ +   C+  +     +++ g+
  KOO24947.1 321 SDEAPCAAIVDSGTTLLTFPTDVYNRLLAEVEAGCTTQ-----TNCLQHLEESD---TCDGPYYEaLPDLTITVGGQSLTGVACLPLFdtmdDQTQYGP 411
                 445679***************************88887.....78876333222...33555554155555666666555688999999887788899* PP

                 SEEEEHHHHTTEEEEEETTTTEEEEEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxx RF
         Asp 288 lwiLGdvFlrsayvvfdldnnrvglAe 314
                 l iLG  Flr + + fd+++  + +A+
  KOO24947.1 412 LLILGMPFLRAYATRFDRTTGGMAVAQ 438
                 ******************998888877 PP

>> NYN_YacP  YacP-like NYN domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.7   0.0   1.2e-09   4.4e-06      18     125 ..     529     635 ..     523     656 .. 0.75

  Alignments for each domain:
  == domain 1  score: 26.7 bits;  conditional E-value: 1.2e-09
                 --.HHHHHHHHHHHHHHHHHHHHHH--EEEEEE-TTTS---TT----T.T-EEEE--.....TT--HHHHHHHHHHHC--TT--EEEE---CSSCTGGG CS
    NYN_YacP  18 lkekesleaaRekLieelanyqsfkgyevivVFDAqkvkgseeeeekaeglevvytk.....egetADsvIeklvaelrkekeevvVvTSDraeqlvvf 111
                 l++++++ + R++L  +la    ++g ++++VFD+++ ++ + + ++  ++ v         + etAD++Ie+ ++ + +  + + VvT Dr  ++v++
  KOO24947.1 529 LMSHRKVTKGRDELAAKLA---GIRGSRTVLVFDGRRGEKASVQGSNP-QVVVTHGGdadgvSRETADEYIENAMEGATE--SVIEVVTADRRLRQVAH 621
                 5566678889999998886...677788*******9999888888655.5555554322222579**********99998..9***********99988 PP

                 GCTEEEE-HHHHHH CS
    NYN_YacP 112 gkGAlrlsarelve 125
                  + +  +   ++++
  KOO24947.1 622 LNKVGTINPAKFWR 635
                 76666666666665 PP

>> TAXi_N  Xylanase inhibitor N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.9   1.1   9.5e-08   0.00034       1      52 [.      42      93 ..      42     194 .. 0.82
   2 ?   -0.8   0.1      0.45   1.6e+03      52     122 ..     437     504 ..     424     510 .. 0.67

  Alignments for each domain:
  == domain 1  score: 20.9 bits;  conditional E-value: 9.5e-08
      TAXi_N  1 YlvsisiGtppqplklvvDtGsdltWvqCkpckacssqkkpvfdpsksstyk 52
                Y++s++iGtppq + +v DtGs  + v+ ++c++ + +++  ++ ++s++++
  KOO24947.1 42 YTASLGIGTPPQMVRAVPDTGSYNLVVTSTMCDTHACRTHMRYNIKSSTSFE 93
                99***************************88885444444444444444444 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 0.45
      TAXi_N  52 kavpcssslCkaceasssaksgsssstceyeisygadgssssGvlatdtltlsstdgksvkvpnlvfGCgk 122
                 ++vp +++lC+  ++ s+ +  s   + + + s + ++s+  G l   +++ ++  g ++k ++ vf Cg+
  KOO24947.1 437 AQVPAGTDLCN--QCASTRRVHSVAMQAQRQQSHQ-GHSQRLGPLKVSEVRGPNLVGLQKKGEKTVFFCGR 504
                 67899999999..4555555555555555555553.66677777777777666666666666666666665 PP

>> Asp_protease_2  Aspartyl protease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.6   0.0     0.062   2.2e+02      10      32 ..      55      77 ..      47     104 .. 0.80
   2 !   11.3   0.0   0.00011      0.41       7      90 .]     323     419 ..     317     419 .. 0.70
   3 ?   -2.2   0.0       1.8   6.6e+03      41      71 ..     453     483 ..     447     493 .. 0.79

  Alignments for each domain:
  == domain 1  score: 2.6 bits;  conditional E-value: 0.062
  Asp_protease_2 10 vrfllDTGasttlispelaeklg 32
                    vr++ DTG+ ++++++++ +++ 
      KOO24947.1 55 VRAVPDTGSYNLVVTSTMCDTHA 77
                    7999***********99987764 PP

  == domain 2  score: 11.3 bits;  conditional E-value: 0.00011
  Asp_protease_2   7 GkpvrfllDTGasttlispelaeklglkvreseltvrvsgaggevkarlvrlds........lklggltlknvpalvld..lgeeid.......g 84 
                     + p+ +++D+G + ++ ++++ ++l  +v++   t++ + +    ++++   +         +++gg +l++v++l l   +   +d       +
      KOO24947.1 323 EAPCAAIVDSGTTLLTFPTDVYNRLLAEVEAGC-TTQTNCLQHLEESDTCDGPYyealpdltITVGGQSLTGVACLPLFdtM---DDqtqygplL 413
                     4599*********************99999885.666666666555555444433344455599999999999977666232...2223356669 PP

  Asp_protease_2  85 lLGmdf 90 
                     +LGm+f
      KOO24947.1 414 ILGMPF 419
                     999987 PP

  == domain 3  score: -2.2 bits;  conditional E-value: 1.8
  Asp_protease_2  41 tvrvsgaggevkarlvrldslklggltlknv 71 
                     +++ s+a +++  + ++ +s +lg+l++ +v
      KOO24947.1 453 RRVHSVAMQAQRQQSHQGHSQRLGPLKVSEV 483
                     4556777788888999999999999998887 PP

>> TAXi_C  Xylanase inhibitor C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.3   0.0   7.3e-06     0.026       9      74 ..     304     368 ..     299     378 .. 0.84
   2 ?   -0.5   0.0      0.27   9.6e+02     118     154 ..     392     431 ..     382     437 .. 0.85

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 7.3e-06
                 EEETTEEE-------EE-S----SEEE-SSSSSEEE-HHHHHHHHHHHHHTS-GG...G.E---TT- CS
      TAXi_C   9 isvngkrlplpasaldldktgsggtvlstgtpytvletdvYralvkafakelaaekvkr.vaavkpf 74 
                 +++++k+ ++ +++++  +++   +++++gt++ +++tdvY+ l +++++ +++++  +  ++ ++ 
  KOO24947.1 304 VRLDDKKAAVLSEVVQCSDEAPCAAIVDSGTTLLTFPTDVYNRLLAEVEAGCTTQT--NcLQHLEES 368
                 7788999999999999999999****************************999985..324444444 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 0.27
                 SSEEEE-EEE-...-S--SSSEEE-HHHHBTS-EEEETTT CS
      TAXi_C 118 ggvvClafves...gvagesavviGglqlednllvFDlek 154
                  gv+Cl + ++   +++  +  ++G   l+ +   FD  +
  KOO24947.1 392 TGVACLPLFDTmddQTQYGPLLILGMPFLRAYATRFDRTT 431
                 5799**9999988889999999999999999999999765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (657 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       509  (0.0283898); expected 358.6 (0.02)
Passed bias filter:                      418  (0.0233142); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.58u 0.23s 00:00:00.81 Elapsed: 00:00:00.40
# Mc/sec: 4970.57
//
Query:       KOO24948.1  [L=385]
Description: cytoplasm protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    5.1e-09   36.1   0.0      7e-08   32.4   0.0    2.4  2  GATase_7        Glutamine amidotransferase domain
    2.2e-05   24.7   0.0    7.3e-05   23.0   0.0    1.8  1  GATase_6        Glutamine amidotransferase domain
  ------ inclusion threshold ------
      0.063   13.3   1.1       0.22   11.5   0.3    2.1  2  Glyco_transf_4  Glycosyltransferase Family 4


Domain annotation for each model (and alignments):
>> GATase_7  Glutamine amidotransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.4   0.0   1.2e-11     7e-08      10     103 ..      64     148 ..      56     153 .. 0.84
   2 ?   -3.3   0.0       1.4   8.3e+03      49      63 ..     276     290 ..     271     316 .. 0.75

  Alignments for each domain:
  == domain 1  score: 32.4 bits;  conditional E-value: 1.2e-11
    GATase_7  10 eagaQPmvssedgrlvivfnGeiyNykelreeLeakghrfrtksDtevllallea.ewgeealerlnGmfAfaiwdeeekrlllaRDrlGikPLy 103
                 e  aQP+++   g  v+ fnGei+  + +        h   + sDt  lla+l   + + ++l+r++G +A+a+w++++++l+  RDrlG ++L 
  KOO24948.1  64 EVVAQPLAD-TAG-NVLLFNGEIFGGDGV--------HVPPGASDTARLLAALGTaANIPALLHRVHGPWALAYWHAASRTLWYGRDRLGRRSLL 148
                 556899994.444.699999999987654........556789*****9999887799*********************************9986 PP

  == domain 2  score: -3.3 bits;  conditional E-value: 1.4
    GATase_7  49 frtksDtevllalle 63 
                 f++  D+ vl++l +
  KOO24948.1 276 FSGGIDCMVLARLAD 290
                 777889999887765 PP

>> GATase_6  Glutamine amidotransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.0   0.0   1.2e-08   7.3e-05      31     120 ..      66     147 ..      53     155 .. 0.82

  Alignments for each domain:
  == domain 1  score: 23.0 bits;  conditional E-value: 1.2e-08
    GATase_6  31 gaqPfpsedgrlllvhNGeiynykelreelpalkglafrsrsDtevllalleelG..eevlerlrGmfafaiwdkrentlilardrlgvkpl 120
                  aqP+  ++g  +l +NGei   +           +   + sDt+ lla+l  ++  +++l+r+ G  a a w ++ +tl   rdrlg++ l
  KOO24948.1  66 VAQPLADTAG-NVLLFNGEIFGGD---------GVHVPPGASDTARLLAALGTAAniPALLHRVHGPWALAYWHAASRTLWYGRDRLGRRSL 147
                 4699955555.56789****9996.........234467899*********6666789999***************************8877 PP

>> Glyco_transf_4  Glycosyltransferase Family 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.3   3.8e-05      0.22      81     140 ..      95     156 ..      76     171 .. 0.80
   2 ?   -0.8   0.0      0.23   1.4e+03     119     153 ..     211     249 ..     200     259 .. 0.66

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 3.8e-05
  Glyco_transf_4  81 paalgaallalrr.rlgipl.VltvHglyekrllkarlkplsrllralerrllrradrviav 140
                      a+  a lla++  + +ip   + vHg+++  +++a ++ l++ + +l rr l ra  v+a+
      KOO24948.1  95 GASDTARLLAALGtAANIPAlLHRVHGPWALAYWHAASRTLWYGRDRLGRRSLLRAEPVLAT 156
                     455555555555565677662688******99********************9999888875 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 0.23
  Glyco_transf_4 119 lsrllralerrl.....lrradrviavSeatadelreryg 153
                     l++   ++e+       + +a+ + a S+a+++++ +  +
      KOO24948.1 211 LRPPMANWEAAStadghAAAARLLSALSDAVRRRVSD-VP 249
                     4444444455555666667778888999999999877.55 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (385 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       323  (0.0180155); expected 358.6 (0.02)
Passed bias filter:                      219  (0.0122148); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.44u 0.26s 00:00:00.70 Elapsed: 00:00:00.41
# Mc/sec: 2829.44
//
Query:       KOO24949.1  [L=458]
Description: hypothetical protein Ctob_006232 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.017   15.8   2.5      0.035   14.8   2.5    1.5  1  VCX_VCY   Variable charge X/Y family


Domain annotation for each model (and alignments):
>> VCX_VCY  Variable charge X/Y family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.8   2.5   1.9e-06     0.035      24      69 ..      68     113 ..      57     120 .. 0.88

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 1.9e-06
     VCX_VCY  24 seaspstpkkktpkvgkrGkagpgGrggkkraagkkmaavgapeag 69 
                  e sp++p k+t kv+    a+pgGr      a+++ aa+ a  a+
  KOO24949.1  68 LEQSPTKPSKRTKKVAAAATAAPGGRASETERAARRDAALPAEAAE 113
                 589***********************99987777999999988776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (458 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       553  (0.0308439); expected 358.6 (0.02)
Passed bias filter:                      387  (0.0215851); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.50u 0.25s 00:00:00.75 Elapsed: 00:00:00.41
# Mc/sec: 3338.42
//
Query:       KOO24950.1  [L=267]
Description: hypothetical protein Ctob_006234, partial [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (267 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       802  (0.044732); expected 358.6 (0.02)
Passed bias filter:                      195  (0.0108762); expected 358.6 (0.02)
Passed Vit filter:                        12  (0.000669307); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.25s 00:00:00.63 Elapsed: 00:00:00.39
# Mc/sec: 2061.58
//
Query:       KOO24951.1  [L=754]
Description: glycerophosphoryl diester phosphodiesterase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.1e-33  116.1   0.0    2.9e-21   76.4   0.0    4.5  3  GDPD           Glycerophosphoryl diester phosphodiesterase fa
  ------ inclusion threshold ------
      0.014   15.4   0.1        6.1    6.9   0.0    2.4  2  DUF1325        SGF29 tudor-like domain
       0.24   11.1   0.0         18    4.9   0.0    2.3  2  Terpene_synth  Terpene synthase, N-terminal domain


Domain annotation for each model (and alignments):
>> GDPD  Glycerophosphoryl diester phosphodiesterase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   76.4   0.0   4.9e-25   2.9e-21       1     258 [.      29     357 ..      29     358 .. 0.76
   2 !   18.6   0.4   2.1e-07    0.0012       1      24 [.     420     443 ..     420     445 .. 0.98
   3 !   14.3   0.0   4.1e-06     0.025      57     258 ..     465     710 ..     454     711 .. 0.68

  Alignments for each domain:
  == domain 1  score: 76.4 bits;  conditional E-value: 4.9e-25
                 TTTTTTTSSTTSHHHHHHHHHTT-SEEEEEEEE-TTS-EEE-SS.......SBSTTTCSCCCH............................BGGGS-HH CS
        GDPD   1 HRGasgnlpEnTlesfakAaelGadyiEfDvqlTkDgvpVvlHD.......fnldrttdvagr...........................ldvkdltle 65 
                 HRGa  ++pE+T es+++A+elGa  +E+Dv++TkDg +V+ HD              +                                 ++dltl+
  KOO24951.1  29 HRGACLQFPEHTAESYQAAIELGAGIVECDVAVTKDGELVCRHDqcdlhtsT------NILATplaakcsipfqaanptanppiptatvkCCTSDLTLA 121
                 ********************************************85444442......443334555668********************9******** PP

                 HHHTST...................ECCTTCCCCSCCCSSGCC..B...BHHHHHHHHHHCCSEEEEEEECCCCCCCHHHH.HHTCHHHCCCCCSCHHT CS
        GDPD  66 elkrld...................kiakenkaqlsenrvrle..fpfptleevlkkpqnvglnieikipmlseakeeeel.qivkeilksvdeilkkv 142
                 e+k+l                    ++  + +  l+ ++++++   +++t +e ++ + + g +   +++ + + +      q+  +++   ++ +   
  KOO24951.1 122 EFKTLCgkmdagnsaattaaaymgmDATERFRTDLYSDAYDGTvcPTLVTHKESIAIINAAGRKFTPELKDYTQGSLSLTYnQVRQKVVDEYKQAG--- 217
                 ******9999999999888888887555666777777777777999999******99888888888888887765544442255555555555555... PP

                 T..STTCSCEEEESTHHHHHHHHHTCT.......CTEEEEEEHHHHHHC-E.EECHCCCCCCCTCCCCHHCCCHCCCE.........B.CHHHHHHHTT CS
        GDPD 143 lkkadkrkvifssfnpdilkllrekqp.......klpllflteggteaeadssleraakfakadallgevsavaeglg.........dpdlVkraksrg 225
                        +v ++sfn   + +  + +p       +        +g +      l+ ++  + a ++  + + + +++          ++    +a + g
  KOO24951.1 218 ---VSVSRVWLQSFNEPDVMYWLQNEPlfgaqavM-------LDGNYTFGG--LRPQLTRLAAAGVKYVAPPIGQLIAsnpngtglvPSGYAAAAIAVG 304
                 ...56789******976666666666635444443.......333333333..333333333333333333333333344444455588889999999* PP

                 -EEEEBSB-THS....................HHHHHHHHCCC-SEEEES-HH CS
        GDPD 226 lvvhvytvnned....................eeemkrlleagvdgvitDfpd 258
                 ++v ++tv  +                      e ++ l ++gv gv+ D p+
  KOO24951.1 305 MKVITWTVERNYecwpaeastratppckgmneLELIDALYKMGVVGVFSDWPA 357
                 ********99999******************988999*************886 PP

  == domain 2  score: 18.6 bits;  conditional E-value: 2.1e-07
                 TTTTTTTSSTTSHHHHHHHHHTT- CS
        GDPD   1 HRGasgnlpEnTlesfakAaelGa 24 
                 HRGa  ++pE+T es+++A+e+Ga
  KOO24951.1 420 HRGACLQYPEHTAESYQAAIEQGA 443
                 ***********************9 PP

  == domain 3  score: 14.3 bits;  conditional E-value: 4.1e-06
                 .BGGGS-HHHHHTST...............ECCTTCCCCSCCCSSGCC.......B...BHHHHHHH..HHHCCSEEEEEEECCCCCCCHHHHHHTCHH CS
        GDPD  57 ldvkdltleelkrld...............kiakenkaqlsenrvrle.......fpfptleevlkk..pqnvglnieikipmlseakeeeelqivkei 131
                   ++dltl+e+k+l                 i+  n+a+++ + +  +        +++t +e +++   ++ ++  e k+   +  +  +  q+  ++
  KOO24951.1 465 CCTSDLTLAEFKTLCgrmdsakaratsaadYISMANTAPFRTDLFSDAhdgptvcPTLVTHKESIAMinAAGRKFTPELKTYYPWPGSLTYD-QVRQKV 562
                 56788888888888888887777777777734444555666666655577776666677777777763333333333333333333222222.444444 PP

                 HCCCCCSCHHTT..STTCSCEEEESTHHHHHHHHHTCTCTEEEEEEHHHHHHC-E.......EECHCCCCCCCTCCCCHHCCCH.CCCEB.CHHHHHHH CS
        GDPD 132 lksvdeilkkvlkkadkrkvifssfnpdilkllrekqpklpllflteggteaead......ssleraakfakadallgevsava.eglgdpdlVkraks 223
                 +   +e       k  + +v ++sfn   + +  + +p+   + ++ +g++a          +  + ++++     + +vs+++  glg++   + a +
  KOO24951.1 563 VNEYKEA------KIEPSRVWLQSFNEPDVMYWVNNEPAFGAQAVMLDGSAAFGGfgaragFLYSAGVRYIAPTLGHLIVSTANgTGLGPSAYARNATA 655
                 4444443......478888888888877777777777777777777777777776666666445567777766666666665552567799999***** PP

                 TT-EEEEBSB-THS....................HHHHHHHHCCC-SEEEES-HH CS
        GDPD 224 rglvvhvytvnned....................eeemkrlleagvdgvitDfpd 258
                 +gl++ ++tv  +                        ++ l+++gv gv+ D p+
  KOO24951.1 656 AGLKIITWTVERNYkctpaeastratapcqtfneLVLIDALHKMGVVGVFSDWPA 710
                 **********99999******************9888899************886 PP

>> DUF1325  SGF29 tudor-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.8   0.0    0.0023        13      81     101 ..     351     371 ..     335     380 .. 0.80
   2 ?    6.9   0.0     0.001       6.1      81     102 ..     704     725 ..     699     734 .. 0.82

  Alignments for each domain:
  == domain 1  score: 5.8 bits;  conditional E-value: 0.0023
     DUF1325  81 VLAlYPeTTtFYkAeVvaspk 101
                 V+  +P TTtFY    +a+++
  KOO24951.1 351 VFSDWPATTTFYASCMIAKRE 371
                 66779*******998888664 PP

  == domain 2  score: 6.9 bits;  conditional E-value: 0.001
     DUF1325  81 VLAlYPeTTtFYkAeVvaspkk 102
                 V+  +P TTtFY   V + ++k
  KOO24951.1 704 VFSDWPATTTFYASCVDHLREK 725
                 56679*********99987654 PP

>> Terpene_synth  Terpene synthase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.6   0.0    0.0076        45      50      72 ..     331     353 ..     301     355 .. 0.85
   2 ?    4.9   0.0     0.003        18      45      72 ..     679     706 ..     645     708 .. 0.82

  Alignments for each domain:
  == domain 1  score: 3.6 bits;  conditional E-value: 0.0076
                    -HHHHHHHHHHHHHHTT-GGGGH CS
  Terpene_synth  50 kdeeekLelidtLqrLGisyhFe 72 
                     +  ++Lelid+L ++G+   F+
     KOO24951.1 331 CKGMNELELIDALYKMGVVGVFS 353
                    556689************98886 PP

  == domain 2  score: 4.9 bits;  conditional E-value: 0.003
                    -SSS--HHHHHHHHHHHHHHTT-GGGGH CS
  Terpene_synth  45 ptvypkdeeekLelidtLqrLGisyhFe 72 
                     ++ p +++++L lid+L+++G+   F+
     KOO24951.1 679 RATAPCQTFNELVLIDALHKMGVVGVFS 706
                    4556788999*************98886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (754 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       417  (0.0232584); expected 358.6 (0.02)
Passed bias filter:                      317  (0.0176809); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.58u 0.27s 00:00:00.85 Elapsed: 00:00:00.39
# Mc/sec: 5795.16
//
Query:       KOO24952.1  [L=130]
Description: 40s ribosomal protein s15a [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    6.7e-20   71.3   0.0    8.7e-20   71.0   0.0    1.2  1  Ribosomal_S8  Ribosomal protein S8
  ------ inclusion threshold ------
       0.19   11.8   0.0       0.34   11.0   0.0    1.3  1  GHD           Beta-sandwich domain in beta galactosidase


Domain annotation for each model (and alignments):
>> Ribosomal_S8  Ribosomal protein S8
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   71.0   0.0   9.7e-24   8.7e-20       3     127 .]       7     130 .]       5     130 .] 0.85

  Alignments for each domain:
  == domain 1  score: 71.0 bits;  conditional E-value: 9.7e-24
                   HHHHHHHHHHHHHTT-SEEEE.E--HHHHHHHHHHHHCTSEEEEEEE.CCCCCCEEEEE-BSSS-SBSSSEEEE-SBTTC--EE-CCC---CGGGTS CS
  Ribosomal_S8   3 iadmltrirNaekakkeevev.pasklkeeilkvLkeeGyikdfeve.eekkkkikielkynkkkksvikklkrvskpgrrvYakvkelpkvlnglG 97 
                   ++d+l +i Naek++k++v v pask++ + l+ + ++Gyi +fev+ ++++ ki i l  + +k++vi+   +v  +  + +++  +l    + +G
    KOO24952.1   7 LNDCLRSIFNAEKRGKRQVLVrPASKVIIKFLQQMMKHGYIGEFEVVdDHRSGKIVIDLIGRVNKCGVISPRFDVGAGEMEQWVN--NLLP-ARQFG 100
                   78********************************************9666666666666555555*****988888887775544..4433.467** PP

                   EEEEEETTEEEEHHHHHHCT--EEEEEEEE CS
  Ribosomal_S8  98 iaivsTskGvmtdkeArkkkvGGevlayvw 127
                    +i++Ts G+m ++eA++k++GG++l + +
    KOO24952.1 101 HIILTTSYGIMDHEEAKRKHTGGKILGFFY 130
                   **************************9876 PP

>> GHD  Beta-sandwich domain in beta galactosidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   3.8e-05      0.34      56      71 ..       4      19 ..       2      19 .. 0.94

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 3.8e-05
         GHD 56 vSilpDCktvvfnTak 71
                vS+l DC + +fn +k
  KOO24952.1  4 VSVLNDCLRSIFNAEK 19
                9************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (130 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       473  (0.0263818); expected 358.6 (0.02)
Passed bias filter:                      442  (0.0246528); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.39u 0.25s 00:00:00.64 Elapsed: 00:00:00.40
# Mc/sec: 965.92
//
Query:       KOO24953.1  [L=655]
Description: cation channel family protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    9.1e-25   87.3  19.4    1.4e-24   86.7  19.4    1.2  1  Ion_trans     Ion transport protein
    2.4e-11   43.4   7.3    2.4e-11   43.4   7.3    2.2  2  Ion_trans_2   Ion channel
    2.6e-11   43.5   0.0    4.7e-11   42.6   0.0    1.5  1  cNMP_binding  Cyclic nucleotide-binding domain


Domain annotation for each model (and alignments):
>> Ion_trans  Ion transport protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   86.7  19.4   2.3e-28   1.4e-24       3     239 ..      68     315 ..      66     321 .. 0.82

  Alignments for each domain:
  == domain 1  score: 86.7 bits;  conditional E-value: 2.3e-28
                 HHHHHHHHHHHHHHHHHHCCCSSSSHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHTH..........HHHHHHCHSHHHHHHHHHHHHHHHHH.HHHH. CS
   Ion_trans   3 vfelfilllillncvflaletyfpedelektileilelvftaiftlemllkilalgl..........likkrYlrdpwnilDflvvlpsllsl.vlse. 89 
                  ++++i++li++++++++++ +f   e e  i+ +le+v   if+++ ++++ ++++           i  rY++  w+++D  + +p+ l   + ++ 
  KOO24953.1  68 RWDFLIMFLIIYSAIVVPFRICFSA-EAE-GIMWTLEVVASFIFIVDVIFNFNTAYFkeeklvisrqRIVSRYFSG-WFWIDGPSSTPVELISlYFENt 163
                 59********************999.455.79********************************99999999**99.9*****9999998844333334 PP

                 HHHHHHHHHHHHGGGGGGHHH.......CHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCCCC...SCCSTSSSTTTSSSSSS CS
   Ion_trans  90 esllllsvlrlfrvlrllkli.......srleglrtlvtalirsvkdllnvlllllvvlfifaligvqlfkgklrekne...caktwenpnngntnFdn 178
                 ++l+ll++lrl+r+lrll+l+          +++++ ++ ++r++ ++l+++++++ +++++  +g+   +       e    ++++ ++++g  + ++
  KOO24953.1 164 SHLSLLRFLRLLRLLRLLRLFkldkfiaAIEDRFEISLN-VFRILGMVLRLMFMVHTLGCFWWYVGMASAASGSE---EtwiTRYNGGSAIDGPVH-EQ 257
                 566677777777666666666555555333344555666.9*************************999933322...134477777777777777.88 PP

                 HHHHHHHHHHHHTTSSHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
   Ion_trans 179 fftallwlfrlmttegwgdilyatldekskvaliyfvifiilgsflllNlliaviadnfqe 239
                 +  +++w++++ tt+g+gdi+++t+ e+   ++++f+++i  ++f  +   i+ ++++ ++
  KOO24953.1 258 YTFSVYWALTTVTTIGYGDITPVTMLER---YYTVFAMLIATMMFGYMMSTIGSMMMQMDR 315
                 ****************************...999999999999999999999999998876 PP

>> Ion_trans_2  Ion channel
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.5      0.68   4.1e+03       3      16 ..      73      86 ..      61     116 .. 0.57
   2 !   43.4   7.3     4e-15   2.4e-11      26      79 .]     259     312 ..     241     312 .. 0.94

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 0.68
                 HHHTCHHHHHHHHT CS
  Ion_trans_2  3 lllvlifgaviysl 16
                 +++++i++a+++ +
   KOO24953.1 73 IMFLIIYSAIVVPF 86
                 34444444444444 PP

  == domain 2  score: 43.4 bits;  conditional E-value: 4e-15
                  HHHHHHHHHHHTTS----SSTT-----HHHHHHHHHHHHHHHHHHHHHHHHHHH CS
  Ion_trans_2  26 ldalYfsfvtltTiGYGdivpetdagrlftivyillGlalfalflavlgkvltk 79 
                  + ++Y++++t+tTiGYGdi+p+t + r+ t++ +l+  ++f++ ++++g+++++
   KOO24953.1 259 TFSVYWALTTVTTIGYGDITPVTMLERYYTVFAMLIATMMFGYMMSTIGSMMMQ 312
                  5589**********************************************9985 PP

>> cNMP_binding  Cyclic nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.6   0.0   7.9e-15   4.7e-11       8      87 ..     414     490 ..     407     492 .. 0.88

  Alignments for each domain:
  == domain 1  score: 42.6 bits;  conditional E-value: 7.9e-15
                   -EEE-TTSB-SEEEEEEES-EEEEEEETTS.EEEEEEE-TTEEESHHHHHHTS--SSEEEESSTEEEEEEEHHHHHHHHH CS
  cNMP_binding   8 evifrqGdpadslyivlsGevrvyrlsedgkevvlavlgpGdlfGelalltgeprtatvvAltdsellalprddflellq 87 
                   +vi+++Gd  + +y++++G+v v +     ++++l +l++G++fGe al + ++r ++v + + +e+++l+ d ++e ++
    KOO24953.1 414 DVIYKRGDISKDIYFLRKGTVDVLAAGL--DTKTLYRLNQGQYFGEEALTH-QRRGCSVLSNGWTEIWSLSSDVLDETMA 490
                   89*********************54444..4479************88888.*********************9999886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (655 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1162  (0.0648112); expected 358.6 (0.02)
Passed bias filter:                      558  (0.0311228); expected 358.6 (0.02)
Passed Vit filter:                        53  (0.0029561); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.62u 0.25s 00:00:00.87 Elapsed: 00:00:00.39
# Mc/sec: 4987.44
//
Query:       KOO24954.1  [L=111]
Description: hypothetical protein Ctob_002448, partial [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (111 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       421  (0.0234815); expected 358.6 (0.02)
Passed bias filter:                      238  (0.0132746); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.24s 00:00:00.57 Elapsed: 00:00:00.37
# Mc/sec: 896.41
//
Query:       KOO24955.1  [L=203]
Description: hypothetical protein Ctob_002449 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (203 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       292  (0.0162865); expected 358.6 (0.02)
Passed bias filter:                      249  (0.0138881); expected 358.6 (0.02)
Passed Vit filter:                         8  (0.000446204); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.23s 00:00:00.59 Elapsed: 00:00:00.37
# Mc/sec: 1662.92
//
Query:       KOO24956.1  [L=532]
Description: hypothetical protein Ctob_002460, partial [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      2e-07   31.3   3.0      0.042   14.2   0.1    3.5  3  PDZ              PDZ domain
    2.8e-05   23.8   3.9        1.5    8.7   0.0    3.8  3  PDZ_6            PDZ domain
    0.00074   19.8   4.4       0.23   11.8   0.1    3.7  3  PDZ_2            PDZ domain
      0.005   17.0   3.2        5.2    7.3   0.5    3.8  3  FAA_hydrolase_N  Fumarylacetoacetase N-terminal
  ------ inclusion threshold ------
       0.16   12.1   0.3         16    5.6   0.0    2.6  2  Lambda_CIII      Lambda Phage CIII


Domain annotation for each model (and alignments):
>> PDZ  PDZ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.2   0.1   1.2e-05     0.042       8      72 ..     192     251 ..     187     265 .. 0.88
   2 !    9.7   0.1   0.00031       1.1      24      72 ..     324     375 ..     308     390 .. 0.80
   3 !    6.0   0.0    0.0042        15      10      53 ..     493     531 ..     484     532 .] 0.81

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 1.2e-05
                 TTSESSEEEEEETTSSSSSSEEEEEECTTSHHHHHTSSTTEEEEEETTEETTTSHHHHHHHHHHT CS
         PDZ   8 grgglGfslkggsdqrgdkgifvsevlpggaaeadglkvGDkIlsvNgvdvenvsheeavqaikg 72 
                 g+g+lG+    g        + + +v +g+  e++g+ +G k++sv g+++e+v   ++++ ik 
  KOO24956.1 192 GPGPLGMVFGQGVG-----FVTIHHVAEGSQGEQQGVAIGSKVISVAGESMEGVPRPAVMARIKD 251
                 56777877777776.....89*********************************99999988885 PP

  == domain 2  score: 9.7 bits;  conditional E-value: 0.00031
                 SSSSEEE.EEEC..TTSHHHHHTSSTTEEEEEETTEETTTSHHHHHHHHHHT CS
         PDZ  24 gdkgifv.sevl..pggaaeadglkvGDkIlsvNgvdvenvsheeavqaikg 72 
                 +++g++v s+v+  +g+ ae++g+ +G k++sv g+++e+v   +++  ik 
  KOO24956.1 324 EQQGVVVgSNVVsvAGSQAEQQGVAIGSKVISVAGESMEGVPRPAVMSRIKD 375
                 45677773445411569999999*****************998888887775 PP

  == domain 3  score: 6.0 bits;  conditional E-value: 0.0042
                 SESSEEEEEETTSSSSSSEEEEEECTTSHHHHHTSSTTEEEEEE CS
         PDZ  10 gglGfslkggsdqrgdkgifvsevlpggaaeadglkvGDkIlsv 53 
                 g+lG+     +       + + +v pg+ ae++g+ +G k++sv
  KOO24956.1 493 GPLGMAFGHVDG-----CVTILSVTPGSQAEQQGVAIGSKVISV 531
                 556666655544.....58999********************98 PP

>> PDZ_6  PDZ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.9   0.1    0.0015       5.4       5      32 ..     212     239 ..     208     252 .. 0.90
   2 !    8.7   0.0   0.00042       1.5       6      32 ..     337     363 ..     334     390 .. 0.85
   3 !    7.5   0.2     0.001       3.7       2      25 ..     508     531 ..     507     532 .] 0.92

  Alignments for each domain:
  == domain 1  score: 6.9 bits;  conditional E-value: 0.0015
       PDZ_6   5 VdpgsPAdrAGlrvGDiilsvNGqpveg 32 
                 V +gs +++ G+ +G  ++sv G++ eg
  KOO24956.1 212 VAEGSQGEQQGVAIGSKVISVAGESMEG 239
                 889*********************9976 PP

  == domain 2  score: 8.7 bits;  conditional E-value: 0.00042
       PDZ_6   6 dpgsPAdrAGlrvGDiilsvNGqpveg 32 
                 ++gs A++ G+ +G  ++sv G++ eg
  KOO24956.1 337 VAGSQAEQQGVAIGSKVISVAGESMEG 363
                 689********************9976 PP

  == domain 3  score: 7.5 bits;  conditional E-value: 0.001
       PDZ_6   2 VtaVdpgsPAdrAGlrvGDiilsv 25 
                 + +V pgs A++ G+ +G  ++sv
  KOO24956.1 508 ILSVTPGSQAEQQGVAIGSKVISV 531
                 679****************99998 PP

>> PDZ_2  PDZ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.2   0.1     0.015        54       7      44 ..     200     235 ..     194     241 .. 0.82
   2 ?    3.3   0.1     0.029   1.1e+02      15      43 ..     327     358 ..     306     365 .. 0.57
   3 !   11.8   0.1   6.4e-05      0.23       3      41 ..     495     531 ..     493     532 .] 0.94

  Alignments for each domain:
  == domain 1  score: 4.2 bits;  conditional E-value: 0.015
                 ------..-EEEEEE-TTSGGGGT.--TT-EEEEETTB CS
       PDZ_2   7 vsdeedtggvlvvsVkeggPaakaglkagDvilkvdgk 44 
                 + +  +   v++ +V eg+  +++g+++g ++++v g 
  KOO24956.1 200 FGQGVG--FVTIHHVAEGSQGEQQGVAIGSKVISVAGE 235
                 555554..799***********************9886 PP

  == domain 2  score: 3.3 bits;  conditional E-value: 0.029
                 -EEEEE....E-TTSGGGGT.--TT-EEEEETT CS
       PDZ_2  15 gvlvvs....VkeggPaakaglkagDvilkvdg 43 
                 gv+v s    V  g+ a+++g+++g ++++v g
  KOO24956.1 327 GVVVGSnvvsV-AGSQAEQQGVAIGSKVISVAG 358
                 33333332113.344566666777776666655 PP

  == domain 3  score: 11.8 bits;  conditional E-value: 6.4e-05
                 ..XX------..-EEEEEE-TTSGGGGT.--TT-EEEEE CS
       PDZ_2   3 lGvsvsdeedtggvlvvsVkeggPaakaglkagDvilkv 41 
                 lG  +  +++   v++ sV++g+ a+++g+++g ++++v
  KOO24956.1 495 LGMAFGHVDG--CVTILSVTPGSQAEQQGVAIGSKVISV 531
                 8999999999..***********************9987 PP

>> FAA_hydrolase_N  Fumarylacetoacetase N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.8   0.0     0.018        63      13      33 ..     216     236 ..     208     265 .. 0.75
   2 !    7.3   0.5    0.0015       5.2       7      53 ..     334     382 ..     331     436 .. 0.64
   3 ?    3.9   0.0     0.017        60      10      28 ..     512     530 ..     508     532 .] 0.84

  Alignments for each domain:
  == domain 1  score: 3.8 bits;  conditional E-value: 0.018
                      EESEEEEEEETTEEEEHHHHH CS
  FAA_hydrolase_N  13 kkeprigvaIGdqvldLsala 33 
                      ++ ++ gvaIG++v+ ++  +
       KOO24956.1 216 SQGEQQGVAIGSKVISVAGES 236
                      557899*********987655 PP

  == domain 2  score: 7.3 bits;  conditional E-value: 0.0015
                      EEEESSEESEEEEEEETTEEEEHHHHHHTTSS-ST..GG...SSSGTTS CS
  FAA_hydrolase_N   7 vfstkekkeprigvaIGdqvldLsalaeaglfsql..eedaeekesvfs 53 
                      v+s +++++++ gvaIG++v+ ++  + +g+ +    +++++e +++ +
       KOO24956.1 334 VVSVAGSQAEQQGVAIGSKVISVAGESMEGVPRPAvmSRIKDEMQRAAE 382
                      7888999999***********9988766666442244444444444444 PP

  == domain 3  score: 3.9 bits;  conditional E-value: 0.017
                      ESSEESEEEEEEETTEEEE CS
  FAA_hydrolase_N  10 tkekkeprigvaIGdqvld 28 
                      t+++++++ gvaIG++v+ 
       KOO24956.1 512 TPGSQAEQQGVAIGSKVIS 530
                      57788999*********97 PP

>> Lambda_CIII  Lambda Phage CIII
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.9   0.0     0.015        55       2      26 ..     230     254 ..     229     261 .. 0.86
   2 ?    5.6   0.0    0.0046        16       2      25 ..     354     377 ..     353     386 .. 0.87

  Alignments for each domain:
  == domain 1  score: 3.9 bits;  conditional E-value: 0.015
  Lambda_CIII   2 yAiAGwpvaGvpqESlLdRitrklR 26 
                  + +AG    Gvp    + Ri + ++
   KOO24956.1 230 ISVAGESMEGVPRPAVMARIKDEMK 254
                  78***********999999998775 PP

  == domain 2  score: 5.6 bits;  conditional E-value: 0.0046
  Lambda_CIII   2 yAiAGwpvaGvpqESlLdRitrkl 25 
                  + +AG    Gvp    ++Ri + +
   KOO24956.1 354 ISVAGESMEGVPRPAVMSRIKDEM 377
                  78******************9976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (532 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1242  (0.0692732); expected 358.6 (0.02)
Passed bias filter:                      536  (0.0298957); expected 358.6 (0.02)
Passed Vit filter:                        63  (0.00351386); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.61u 0.27s 00:00:00.88 Elapsed: 00:00:00.41
# Mc/sec: 3880.08
//
Query:       KOO24957.1  [L=452]
Description: hypothetical protein Ctob_002453, partial [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (452 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       278  (0.0155056); expected 358.6 (0.02)
Passed bias filter:                      184  (0.0102627); expected 358.6 (0.02)
Passed Vit filter:                        11  (0.000613531); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.45u 0.27s 00:00:00.72 Elapsed: 00:00:00.42
# Mc/sec: 3238.24
//
Query:       KOO24958.1  [L=169]
Description: hypothetical protein Ctob_002452, partial [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (169 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       273  (0.0152267); expected 358.6 (0.02)
Passed bias filter:                      229  (0.0127726); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.25s 00:00:00.61 Elapsed: 00:00:00.39
# Mc/sec: 1315.11
//
Query:       KOO24959.1  [L=218]
Description: hypothetical protein Ctob_002451 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (218 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       490  (0.02733); expected 358.6 (0.02)
Passed bias filter:                      305  (0.0170115); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.41u 0.25s 00:00:00.65 Elapsed: 00:00:00.41
# Mc/sec: 1588.43
//
Query:       KOO24960.1  [L=224]
Description: hypothetical protein Ctob_002450 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (224 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       300  (0.0167327); expected 358.6 (0.02)
Passed bias filter:                      254  (0.014167); expected 358.6 (0.02)
Passed Vit filter:                        11  (0.000613531); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.41u 0.23s 00:00:00.64 Elapsed: 00:00:00.40
# Mc/sec: 1674.86
//
Query:       KOO24961.1  [L=368]
Description: hypothetical protein Ctob_002457 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (368 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       701  (0.0390987); expected 358.6 (0.02)
Passed bias filter:                      160  (0.00892409); expected 358.6 (0.02)
Passed Vit filter:                         9  (0.00050198); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.48u 0.27s 00:00:00.75 Elapsed: 00:00:00.43
# Mc/sec: 2551.48
//
Query:       KOO24962.1  [L=539]
Description: amidophosphoribosyltransferase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.2e-13   51.5   0.0    5.5e-13   49.3   0.0    2.1  1  GATase_6      Glutamine amidotransferase domain
    2.2e-13   50.2   0.0    8.3e-13   48.3   0.0    2.0  2  GATase_7      Glutamine amidotransferase domain
    7.6e-07   28.8   0.0    1.6e-06   27.8   0.0    1.4  1  Pribosyltran  Phosphoribosyl transferase domain
  ------ inclusion threshold ------
       0.02   13.8   0.0      0.032   13.1   0.0    1.2  1  GATase_4      Glutamine amidotransferases class-II
      0.038   14.0   0.2        1.3    9.0   0.0    2.4  2  DUF1471       Protein of unknown function (DUF1471)


Domain annotation for each model (and alignments):
>> GATase_6  Glutamine amidotransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.3   0.0   1.5e-16   5.5e-13       8     125 ..      64     209 ..      31     223 .. 0.76

  Alignments for each domain:
  == domain 1  score: 49.3 bits;  conditional E-value: 1.5e-16
    GATase_6   8 slvedevalaHvRlaivglaeeegaqPf.psedgrlllvhNGeiynykelreelpalkglafrsrsDtevllall...............eelG..... 85 
                    +++v+++HvR  + g + +++aqPf +++  +++l+hNG   n  el++e+ + + +++++ sD+evll+++               + +G     
  KOO24962.1  64 AKLTGSVGIGHVRYPTAGSSCSAEAQPFyVNSPFGIVLAHNGNLVNCTELKAEMVS-EWRHLNTGSDSEVLLNIFaaavrdsvslrssspKVAGalpgc 161
                 233556**************99999***8899999*********************.99999***********88889999999988887444456667 PP

    GATase_6  86 .........eevlerlrGmfafaiwdk.rentlilardrlgvkplyyavd 125
                            v++r+ G +a+  ++     +l+  rd +g++pl+y+  
  KOO24962.1 162 ndadvleavRNVMRRCIGGYAV--VTLiVGWGLVAFRDPHGIRPLVYGRR 209
                 7733433333344455554544..33323344444499999999999876 PP

>> GATase_7  Glutamine amidotransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.0   0.0       3.6   1.3e+04      75      95 ..      29      49 ..      27      52 .. 0.80
   2 !   48.3   0.0   2.3e-16   8.3e-13      10     121 ..      85     227 ..      76     229 .. 0.90

  Alignments for each domain:
  == domain 1  score: -4.0 bits;  conditional E-value: 3.6
    GATase_7 75 nGmfAfaiwdeeekrlllaRD 95
                +G+ A  i++e+++rl l +D
  KOO24962.1 29 RGQDAAGIVTEDRGRLALRKD 49
                677788899999999999888 PP

  == domain 2  score: 48.3 bits;  conditional E-value: 2.3e-16
    GATase_7  10 eagaQPmvssedgrlvivfnGeiyNykelreeLeakghrfrtksDtevllallea............................ewgeealerlnGmfAf 80 
                 +a+aQP++ ++   +v+++nG ++N +el++e+ ++  + +t sD+evll++++a                            e ++++++r+ G +A+
  KOO24962.1  85 SAEAQPFYVNSPFGIVLAHNGNLVNCTELKAEMVSEWRHLNTGSDSEVLLNIFAAavrdsvslrssspkvagalpgcndadvlEAVRNVMRRCIGGYAV 183
                 6789****966666****************************************9******************************************** PP

    GATase_7  81 aiwdeeekrlllaRDrlGikPLyygedk...gd.allfaSelkal 121
                 + +      l++ RD+ Gi+PL yg++k   g  +++ aSe  al
  KOO24962.1 184 VTLIVGW-GLVAFRDPHGIRPLVYGRRKnesGAvEYMAASESGAL 227
                 *998777.7*****************9954311467888888777 PP

>> Pribosyltran  Phosphoribosyl transferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.8   0.0   4.3e-10   1.6e-06      12     124 ..     294     414 ..     288     438 .. 0.89

  Alignments for each domain:
  == domain 1  score: 27.8 bits;  conditional E-value: 4.3e-10
                   EEEEEETTEEEEEE.--GGGEEEEEEETTTHHHHHHHHHHSTT-EE.-EEEEEE-TTT--EE..............EE----TTSEEEEE-SEESSS CS
  Pribosyltran  12 ldavarlaaeilee.yngkpdvvvgiargGvpfakiladeLevpla.yvrkvkyrpdgseeaargssdes......rlledpagkkVliVDDildtG 100
                   l+  a+la +il + +++ +dvv++++  + + a + a  L++++    +k +y + +    ++g+ + s        ++++ g+ Vl+VDD +  G
    KOO24962.1 294 LRMGAKLANRILATwKDHDIDVVIPVPDTSRTAALECAGVLGIKYReGFLKNRYIGRTFIMPQQGLRKKSvrqklsPIASEFLGRNVLLVDDSIVRG 390
                   56679999*********************************999665999****999999999999888899999999******************* PP

                   HHHHHHHHHHHCC-BSEEEEEEEE CS
  Pribosyltran 101 gTllaalelLkekgpeevriavlv 124
                   +T  +++   +e+g+++v ia  +
    KOO24962.1 391 TTCGEIVLMAREAGAKRVYIASAA 414
                   ******************998654 PP

>> GATase_4  Glutamine amidotransferases class-II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.0     9e-06     0.032      72     118 ..      69     114 ..      61     163 .. 0.69

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 9e-06
    GATase_4  72 knvvaHiRkatqGevklenthpFvRelwgrewifAHnGdlkeykpkl 118
                 ++ + H+R  t G+   ++++pF  +     +++AHnG+l + ++  
  KOO24962.1  69 SVGIGHVRYPTAGSSCSAEAQPFYVN-SPFGIVLAHNGNLVNCTELK 114
                 56799******************865.45679********7744332 PP

>> DUF1471  Protein of unknown function (DUF1471)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.5   0.0     0.042   1.5e+02      23      41 ..     396     414 ..     394     424 .. 0.84
   2 ?    9.0   0.0   0.00036       1.3      12      31 ..     460     479 ..     451     482 .. 0.93

  Alignments for each domain:
  == domain 1  score: 2.5 bits;  conditional E-value: 0.042
                 HHHHHHHCT-SEEEECCEC CS
     DUF1471  23 lskkAdekGAkyYrItsar 41 
                 +  +A e+GAk  +I sa 
  KOO24962.1 396 IVLMAREAGAKRVYIASAA 414
                 6668***********9985 PP

  == domain 2  score: 9.0 bits;  conditional E-value: 0.00036
                 S-SSHHHHHHHHHHHHHHCT CS
     DUF1471  12 vfgspsdledalskkAdekG 31 
                 v+ +++dle+a++++A+e+G
  KOO24962.1 460 VYQNLHDLEQAIQEEAKEAG 479
                 5899***************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (539 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       506  (0.0282224); expected 358.6 (0.02)
Passed bias filter:                      478  (0.0266607); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.57u 0.25s 00:00:00.82 Elapsed: 00:00:00.41
# Mc/sec: 3909.22
//
Query:       KOO24963.1  [L=422]
Description: extracellular response kinase, partial [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.5e-66  224.5   0.0      2e-66  224.0   0.0    1.2  1  Pkinase         Protein kinase domain
    5.9e-31  107.7   1.1      6e-31  107.7   0.1    1.5  2  Pkinase_Tyr     Protein tyrosine kinase
    2.4e-05   23.5   0.1    3.7e-05   22.8   0.1    1.3  1  Haspin_kinase   Haspin like kinase domain
     0.0045   15.8   1.6      0.018   13.8   0.0    2.4  3  Pkinase_fungal  Fungal protein kinase
  ------ inclusion threshold ------
      0.011   15.1   4.5      0.016   14.5   0.3    2.6  3  Kinase-like     Kinase-like
      0.024   14.6   2.0       0.05   13.5   0.4    2.3  3  APH             Phosphotransferase enzyme family
      0.043   13.2   1.6      0.086   12.2   1.6    1.5  1  Kdo             Lipopolysaccharide kinase (Kdo/WaaP) family


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  224.0   0.0     8e-70     2e-66       1     264 []      59     355 ..      59     355 .. 0.91

  Alignments for each domain:
  == domain 1  score: 224.0 bits;  conditional E-value: 8e-70
                 EEEEEEEEEESSEEEEEEEETTTTEEEEEEEEECHCHCHHHHHHHHHHHHHHHHHS.CTTB--EEEEEEE..SSEEEEEEE--TTEBHHHHHHHHSS-- CS
     Pkinase   1 yekleklGeGsfGkVykaveketgkivAvKkikkekakkkkekkvlrEikilkklk.hpnivrlyevfee..kdelylvleyveggeladllerkgsls 96 
                 y  ++klG+G++G V +a++++t++ vA+Kki    ++ ++ ++++rE+ +l+++k h++iv l++v++   ++++ylv+e++e++ l+ +++   +l+
  KOO24963.1  59 YDIVQKLGKGAYGIVWRATDRRTKDVVALKKIFDAFQNATDAQRTFREVMFLQEMKgHEHIVSLLNVLKAdnDRDIYLVFEHMETD-LHAAIR-ANILQ 155
                 67899**************************************************************99866889*********77.999996.57899 PP

                 HHHHHHHHHHHHHHHHHHHHTTEE-SS-SGGGEEEETTTEEEE-SGTTSEESSSSCS.......BCTTTSCGGGS-HHHH.TTSCBSHHHHHHHHHHHH CS
     Pkinase  97 eeeakkiakqilegleylHskgiiHrDlKpeNiLidekgelKitDFGlakelesssk.......ltsfvgtseYlAPEvl.keneyskkvDvWslGvil 187
                 + + + i++q l++l+++Hs++++HrD+Kp+N+L++++  +K++DFGla+ +++ ++       +t++++t++Y+APE+l ++n+ys++vD+W++G+il
  KOO24963.1 156 DVHKQYIMWQALKALKFMHSANLLHRDMKPSNLLLNSDCLMKVADFGLARSMHEPKEdaeeqryFTDYIATRWYRAPEILlGSNNYSEAVDMWGVGCIL 254
                 99999*******************************9999**************9999**********************9****************** PP

                 HHHHHSS-STTTSSHHHHHHHHHHTHHHHHHHCTSHH...HHHTTS...............................-HHHHHHHHHHT-SSGCCSTTH CS
     Pkinase 188 yelltgkppfsgekgkekvekeldqlekilkilgetkeklpeasei...............................seeakdllkkllkkdpkkRlta 255
                  e+++gkp+f+   g++     ++qle +++++g  + + ++ + +                               s++a+dllkkllk dp +R+ a
  KOO24963.1 255 GEIVCGKPVFA---GSS----TIQQLELVCDLIGLPDWDREQMERCspytnqmlqnlnvsnprgvshsewcnrfpgaSDKALDLLKKLLKFDPAERINA 346
                 ***********...433....666777777777733333333333344455569999****************************************** PP

                 HHHHTSGGG CS
     Pkinase 256 eellqhpyl 264
                 +++l+hpyl
  KOO24963.1 347 HDALKHPYL 355
                 *******97 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  107.7   0.1   2.3e-34     6e-31       3     217 ..      61     275 ..      59     309 .. 0.85
   2 ?   -3.0   0.1       1.4   3.6e+03      26      59 ..     364     401 ..     357     404 .. 0.58

  Alignments for each domain:
  == domain 1  score: 107.7 bits;  conditional E-value: 2.3e-34
                  EEEEEEEESSEEEEEEEEETTTTSSEEEEEEEEE.STTSSHHHHHHHHHHHHHHHTS.-BTTB--EEEEEE..SSSSEEEEEE--TTEBHHHHHHHTC CS
  Pkinase_Tyr   3 lgkklGeGafGkVvegtlkgekekkevkVavKtl.keeateeekeelleeakimkkl.khpnivkllgvct..keepllivteyvkgGdLlkfLrkke 96 
                  + +klG+Ga+G V+++t +    +++  Va+K++ ++ +++++ ++ ++e+ +++++  h++iv+ll v    +++ +++v+e ++  dL+  +r++ 
   KOO24963.1  61 IVQKLGKGAYGIVWRATDR----RTKDVVALKKIfDAFQNATDAQRTFREVMFLQEMkGHEHIVSLLNVLKadNDRDIYLVFEHMET-DLHAAIRAN- 152
                  5789*************99....88889999998466667777999***********99***********9877777********86.9*******9. PP

                  TTTSBHHHHHHHHHHHHHHHHHHHHTTEEEST-SGGGEEEEETTEEEE-STTTHEETTTSSEE...EETTSSTSGGGGS.-HHHHHHSE.EEHHHHHH CS
  Pkinase_Tyr  97 kekltlkdllsfalqvAkGmeyLeskklvHrdlaarNvLlsenkvvkisDfGLardiekddey...vkkeeaklpvkWm.apEslkekk.ftsksDvW 189
                     l+  ++  +++q  k++++++s +l+Hrd+   N Ll+++ ++k++DfGLar++++ +e    ++  +  +  +W+ apE+l  ++ ++++ D+W
   KOO24963.1 153 --ILQDVHKQYIMWQALKALKFMHSANLLHRDMKPSNLLLNSDCLMKVADFGLARSMHEPKEDaeeQRYFTDYIATRWYrAPEILLGSNnYSEAVDMW 248
                  ..8888899999********************************************95433331224555667999**98***9875544******** PP

                  HHHHHHHHHHTTSSGTTTTSHHHHHHHH CS
  Pkinase_Tyr 190 sfGvllwEiftlgespypglkneevlek 217
                    G +l Ei++ g+  ++g ++ + le 
   KOO24963.1 249 GVGCILGEIVC-GKPVFAGSSTIQQLEL 275
                  **********9.8887777766665555 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 1.4
                  SSEEEEEEEEE....STTSSHHHHHHHHHHHHHHHTS- CS
  Pkinase_Tyr  26 kkevkVavKtl....keeateeekeelleeakimkklk 59 
                  ++e  V vK+     ++++t++ +e+l++e++ ++kl+
   KOO24963.1 364 EREAPVKVKVSipdnEKRSTNHYRERLYKEVAEFRKLE 401
                  45555666655332133444444888888888887774 PP

>> Haspin_kinase  Haspin like kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.8   0.1   1.4e-08   3.7e-05      99     257 ..      58     207 ..      15     223 .. 0.78

  Alignments for each domain:
  == domain 1  score: 22.8 bits;  conditional E-value: 1.4e-08
  Haspin_kinase  99 eadlasllndseklssevyqtke..kdkevvlKviplevledvtiskelslkelkslklvkgtypglllllqdkvlkekpdfyseqqlflvlllkd 192
                    ++d++++   +++ ++ v+++++  +++ v+lK+i +++ ++ t        e   l+ +kg   ++++ l + ++ ++       +  ++l++++
     KOO24963.1  58 KYDIVQK--LGKGAYGIVWRATDrrTKDVVALKKI-FDAFQNATDA-QRTFREVMFLQEMKGH--EHIVSLLNVLKADN-------DRDIYLVFEH 140
                    3344443..47889999***999767777889998.7888888776.556899999999***9..77766666665555.......8899****** PP

  Haspin_kinase 193 kGtdLeev.klkswkqals..ifwqivkiLyvaEtkfeFEHRdLhldniLvdknlnvtlidlklsRle 257
                    + tdL    + +  +++ +  i+wq +k L+   ++ ++ HRd++  n L+++   + + d+ l+R  
     KOO24963.1 141 METDLHAAiRANILQDVHKqyIMWQALKALKFMHSA-NLLHRDMKPSNLLLNSDCLMKVADFGLARSM 207
                    *****9875666666665445**********99765.788**************************87 PP

>> Pkinase_fungal  Fungal protein kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.1   0.1       0.1   2.6e+02     159     207 ..      72     124 ..      45     160 .. 0.69
   2 !   13.8   0.0   7.2e-06     0.018     314     387 ..     165     236 ..     161     247 .. 0.81
   3 ?   -2.5   0.0      0.64   1.6e+03     189     248 ..     299     363 ..     297     401 .. 0.55

  Alignments for each domain:
  == domain 1  score: 0.1 bits;  conditional E-value: 0.1
  Pkinase_fungal 159 tcwrarkegergkeyvvKdsWr......daerk.sEaelLkkaeergvegvarlva 207
                     ++wra+ ++++   + +K          da+r+ +E+ +L+++  +g e+++ l++
      KOO24963.1  72 IVWRATDRRTK-DVVALKKIFDafqnatDAQRTfREVMFLQEM--KGHEHIVSLLN 124
                     68888876555.3455555443333444778888888888888..77777776654 PP

  == domain 2  score: 13.8 bits;  conditional E-value: 7.2e-06
  Pkinase_fungal 314 DaIkghrsLflkagiLHrDiSenNilitdskkegerkglLiDLDlakelsddssesga....rertGTleFmaievlk 387
                     +a+k+++ ++  a++LHrD    N+l++     +++   ++D+ la +++++++++++     + + T+ + a e+l 
      KOO24963.1 165 QALKALKFMH-SANLLHRDMKPSNLLLN-----SDCLMKVADFGLARSMHEPKEDAEEqryfTDYIATRWYRAPEILL 236
                     6899999999.*****************.....899999***********9888776544555566666666666665 PP

  == domain 3  score: -2.5 bits;  conditional E-value: 0.64
  Pkinase_fungal 189 elLkkaeergvegvarlvahedveekdddi.aeiRkgldvtkaekfrskrkvvsssssqe.....l 248
                     ++L++ + ++ +gv    + +   ++ d+  + ++k l++  ae+++ ++++ +   + +     +
      KOO24963.1 299 QMLQNLNVSNPRGVSHSEWCNRFPGASDKAlDLLKKLLKFDPAERINAHDALKHPYLE-QfhdehV 363
                     6788888888888888888777778888887888888888887544443332221111.1122221 PP

>> Kinase-like  Kinase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.7   0.0      0.05   1.3e+02      11      52 ..      56      97 ..      50     115 .. 0.76
   2 ?   14.5   0.3   6.4e-06     0.016      99     193 ..     111     206 ..     101     264 .. 0.68
   3 ?   -3.1   0.1       1.5   3.9e+03      34      72 ..     363     404 ..     358     407 .. 0.71

  Alignments for each domain:
  == domain 1  score: 1.7 bits;  conditional E-value: 0.05
  Kinase-like 11 ertlvrgellkkgdrsvvfevkdqetgeplavkvfllpseas 52
                  r++  ++ l+kg  ++v++++d  t++ +a+k      +++
   KOO24963.1 56 TRKYDIVQKLGKGAYGIVWRATDRRTKDVVALKKIFDAFQNA 97
                 577778999******************999998765444444 PP

  == domain 2  score: 14.5 bits;  conditional E-value: 6.4e-06
  Kinase-like  99 iqlkskesiywvvnallllpaasvdleilnkvlqkrset...hkkletiarlllTlqlirlaanLqakglvhgkftvdnllldekgglmlggftaLvr 193
                  +++k +e+i +++n l    +   d+ ++++ ++        ++ l+++ ++++  q+++    +++  l+h ++++ nlll+ +  +++ +f+  + 
   KOO24963.1 111 QEMKGHEHIVSLLNVLK--ADNDRDIYLVFEHMETDLHAairANILQDVHKQYIMWQALKALKFMHSANLLHRDMKPSNLLLNSDCLMKVADFGLARS 206
                  55666777776666554..567788888888888766655568889***********************************************84433 PP

  == domain 3  score: -3.1 bits;  conditional E-value: 1.5
  Kinase-like  34 qetgeplavkvfllps.easkkdl.erlkeqelairllrg.k 72 
                  +e+  p++vkv +  + + s + + erl +++   r+l + +
   KOO24963.1 363 VEREAPVKVKVSIPDNeKRSTNHYrERLYKEVAEFRKLEKaE 404
                  677788889988887767777776577888887777777644 PP

>> APH  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.0   0.1      0.27     7e+02       3      75 ..      63     142 ..      62     163 .. 0.58
   2 ?   13.5   0.4     2e-05      0.05     151     199 ..     152     207 ..      93     209 .. 0.75
   3 ?   -1.8   0.0      0.93   2.4e+03      32      50 ..     385     403 ..     325     405 .. 0.66

  Alignments for each domain:
  == domain 1  score: -0.0 bits;  conditional E-value: 0.27
                 EEE--.SSCEEEEEEETT.-.-EEEEEE-TT....S-HHHHHHHHHHHHHHHHTT-..B--B-CTTBS-EEETTEEEEEEE CS
         APH   3 relsggasnrtylvttpa.g.ryvlrrnppa....raaeeirrevallrlLakagv..pvPevlagdtddeeigllfalie 75 
                 + l+ ga+  +++ t+ + +  ++l+ + +a      a+++ rev +l+ + +++   +   vl    +d +i+l+f+ +e
  KOO24963.1  63 QKLGKGAYGIVWRATDRRtKdVVALKKIFDAfqnaTDAQRTFREVMFLQEMKGHEHivSLLNVLK-ADNDRDIYLVFEHME 142
                 56677777767777776643455588877776332334555577777788777766555556665.234444444555554 PP

  == domain 2  score: 13.5 bits;  conditional E-value: 2e-05
                 H..........HHHHHHHH--SSS-EEEE-SS-SGGGEEEC..TTEEEEE---TT-EEE CS
         APH 151 q..........vlaalaallpgelptvllHgDlhpgNllvdpddgrvtGviDfedaglg 199
                 +           ++al+al     ++ llH+D +p Nll++   + +  v Df++a+ +
  KOO24963.1 152 NilqdvhkqyiMWQALKALKFM-HSANLLHRDMKPSNLLLN--SDCLMKVADFGLARSM 207
                 1333344447778899999886.9999**************..5566679999999876 PP

  == domain 3  score: -1.8 bits;  conditional E-value: 0.93
                 S-HHHHHHHHHHHHHHHHT CS
         APH  32 raaeeirrevallrlLaka 50 
                 ++ e++ +eva++r L+ka
  KOO24963.1 385 HYRERLYKEVAEFRKLEKA 403
                 5666666777777766665 PP

>> Kdo  Lipopolysaccharide kinase (Kdo/WaaP) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   1.6   3.4e-05     0.086      55     155 ..     100     194 ..      82     217 .. 0.70

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 3.4e-05
         Kdo  55 rtravrEfrllkrLeeagvavpkpvaagavkvgleyrAlllterlegaqdLedllakwae..laeelkrallkavgrliaklhragvnHadlyaknill 151
                 + r +rE+  l++++     v      ++ k +  +   l+ e++e   dL + ++   +   +++++  +++a+ ++ + +h+a++ H+d+ + n+ll
  KOO24963.1 100 AQRTFREVMFLQEMKGHEHIVS---LLNVLKADNDRDIYLVFEHME--TDLHAAIRA--NilQDVHKQYIMWQAL-KALKFMHSANLLHRDMKPSNLLL 190
                 5566666666666665554443...345566677777788999998..599998886..4324444444555555.7789******************* PP

         Kdo 152 qqee 155
                 + + 
  KOO24963.1 191 NSDC 194
                 9875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (422 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       854  (0.0476323); expected 358.6 (0.02)
Passed bias filter:                      612  (0.0341346); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.56u 0.27s 00:00:00.83 Elapsed: 00:00:00.43
# Mc/sec: 2971.67
//
Query:       KOO24964.1  [L=341]
Description: hypothetical protein Ctob_002454 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.13   12.1   1.8       0.27   11.1   1.8    1.5  1  Flp_Fap    Flp/Fap pilin component
       0.13   12.0   0.6        0.2   11.4   0.6    1.3  1  COX3       Cytochrome c oxidase subunit III


Domain annotation for each model (and alignments):
>> Flp_Fap  Flp/Fap pilin component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   1.8     3e-05      0.27      10      27 ..      57      74 ..      54      85 .. 0.77

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 3e-05
     Flp_Fap 10 AIEYgLIaaliAvviiay 27
                A+ Y++Iaal+Av+   +
  KOO24964.1 57 AVGYAVIAALVAVAFAMA 74
                888**********97744 PP

>> COX3  Cytochrome c oxidase subunit III
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.6   2.3e-05       0.2      95     147 ..      11      64 ..       2      96 .. 0.78

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 2.3e-05
                 HHHHHHHHHS--GG.GTSSSS-TT-----TTSHHHHHHHHHHHHHHHHHHHHHH CS
        COX3  95 fwaffhsalsPtve.lGatwpPvGikavnPlevPllntiillssGvtvtyahhs 147
                  +    s+l+  v   G +w Pv i a  P+ v ll  +  l  G +v ya  +
  KOO24964.1  11 AVISSASSLATLVVfNGYAWQPVAIGAAAPFSVNLLVKVSKLIGGGAVGYAVIA 64 
                 555556677665441599********************************9765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (341 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       640  (0.0356964); expected 358.6 (0.02)
Passed bias filter:                      329  (0.0183502); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.42u 0.27s 00:00:00.69 Elapsed: 00:00:00.41
# Mc/sec: 2490.11
//
Query:       KOO24965.1  [L=362]
Description: 2og-fe oxygenase superfamily protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.3e-22   80.8   0.0    2.4e-22   79.9   0.0    1.4  1  DIOX_N        non-haem dioxygenase in morphine synthesis N-te
    1.4e-20   73.7   0.1    2.6e-20   72.8   0.1    1.5  1  2OG-FeII_Oxy  2OG-Fe(II) oxygenase superfamily


Domain annotation for each model (and alignments):
>> DIOX_N  non-haem dioxygenase in morphine synthesis N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   79.9   0.0   2.6e-26   2.4e-22       2     116 ..       4     117 ..       4     119 .. 0.87

  Alignments for each domain:
  == domain 1  score: 79.9 bits;  conditional E-value: 2.6e-26
      DIOX_N   2 PvidlsplsddedraavaeqlreAcrevGffyvvnhgvpeelidelfeaareFFalPeeeKeklaksp.sfrGysrlgeektdgkkldwkesfdlgtel 99 
                 Pvidl     +++ + v +++ +Ac+++Gff+vvnhgv+++l+++ +e++ +FF+lP ++K kl++++ + rG+ +  +e t++ ++dwke++d+g++ 
  KOO24965.1   4 PVIDLH----KPT-DHVRDEISRACSDYGFFQVVNHGVEPALLAAFREQMVTFFNLPAHKKGKLRRDGsNARGFFD--DELTKR-RRDWKEALDFGVPG 94 
                 99****....544.79************************************************9998688***99..899998.************96 PP

      DIOX_N 100 p......eddpagkplegpnqwP 116
                        ++dpa+  l g n +P
  KOO24965.1  95 SrdwgvkDNDPANACLDGFNRFP 117
                 55555545556666677777766 PP

>> 2OG-FeII_Oxy  2OG-Fe(II) oxygenase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   72.8   0.1   2.8e-24   2.6e-20       4     101 .]     169     275 ..     166     275 .. 0.89

  Alignments for each domain:
  == domain 1  score: 72.8 bits;  conditional E-value: 2.8e-24
                   EEEEEEE-S------..---EEEEEESSSEEEEEEE-.TT---EEEE.......TEEEE----TTEEEEEE-HHHHHHTTS-S----EEE----GTG CS
  2OG-FeII_Oxy   4 llvlnyypphpdpev..ilglgahtdaslltillqdd.vgglevfkd.......gkwlrvppvdnslivniGdallflsngryksvlHrVlpvnege 90 
                    l+lnyypp+++p     lg+ +h+da++lt+l qd     l+v++        g w++  p +++l++n Gd+++++sn ry  +lHrVl + +++
    KOO24965.1 169 YLRLNYYPPCQEPGPppPLGISPHKDAGFLTVLEQDLdCHSLQVVRRgddpndeGAWVTMVPIEGALTINTGDMAQIWSNDRYHAPLHRVL-THPTH 264
                   689*******8888778***************999988999999633345776455***********************************.99999 PP

                   SEEEEEEEE-- CS
  2OG-FeII_Oxy  91 rRvsiayfiep 101
                   rR+s+ +f++p
    KOO24965.1 265 RRYSAPFFYNP 275
                   9*******986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (362 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       206  (0.0114898); expected 358.6 (0.02)
Passed bias filter:                      189  (0.0105416); expected 358.6 (0.02)
Passed Vit filter:                        12  (0.000669307); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.43u 0.23s 00:00:00.66 Elapsed: 00:00:00.39
# Mc/sec: 2774.82
//
Query:       KOO24966.1  [L=882]
Description: centromere kinetochore protein zw10-like protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.5e-24   84.4   0.0    1.4e-17   63.5   0.0    2.1  2  Zw10      Centromere/kinetochore Zw10
  ------ inclusion threshold ------
        1.2    8.7   3.2        1.9    7.9   0.2    2.1  2  Tenui_N   Tenuivirus/Phlebovirus nucleocapsid protein


Domain annotation for each model (and alignments):
>> Zw10  Centromere/kinetochore Zw10
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.8   0.0   5.5e-08   0.00049      45     336 ..      62     372 ..      34     378 .. 0.76
   2 !   63.5   0.0   1.6e-21   1.4e-17     382     544 .]     459     627 ..     446     627 .. 0.86

  Alignments for each domain:
  == domain 1  score: 18.8 bits;  conditional E-value: 5.5e-08
        Zw10  45 sssaeellerveslskeidalkkkveneieqdlkaaveelaelkqqlkekevvlellealkkieealeelkealknkaflvaadlleelks.....lld 138
                   +a+el  +ve l++ + a+     n  ++ l+a+v     l + l   + +l ll  l  ++  l  +++al   +f+ aa+l+  l++     ll+
  KOO24966.1  62 LGCADELRGQVETLQDGVLAIE---CNALRERLEASVLRAPALRERLHASQDSLMLLRCLAAVHRSLGGFETALGANDFRGAAALVAALRErdlpvLLE 157
                 5567777777777777765544...3678889999999999**************************************99999998777533222668 PP

        Zw10 139 lekvekafq.lkilkalrkelsvlsenlqykLgeewdrlvvwklpsskelssaksflkv.klklskeeseqkllsevleAlavlGeleeklklfgqvll 235
                   ++ +      +l  + +e ++ +  l +   + w  +++ +   +    ++ +  +  +l ls   s    l+  + Al+ +G  +  + ++g++ +
  KOO24966.1 158 HPEMTRDRAaTGLLDVIISEVERSESRLHEAALAAWAAAALGRTEIVI---GDPTTHSAeTLVLSADSSR---LHMLVGALSAIGAIDGCMRKLGEAAM 250
                 888999888899*************************99985555555...5554445505555555555...************************** PP

        Zw10 236 kvilkplvlspslvavvedqee......eitlrlessqetkle.....kvepsevYskvlevlevllskLldvnvsselkka..........slleilG 313
                   +l+p+             e        +  + e +++++l      ++   +v + + +vl  l+  L  v+ s  ++              +  lG
  KOO24966.1 251 ARLLRPAFERSHVAIRAARTEDdlavalVVCSSAEADDDASLGisfgfSQRAAQVCEAIETVLGALHDFLAGVSGSAASEPLpgavpsaaatLSILALG 349
                 ******97554444334444443445553444444555555431111145678888999999999999999998887776668889999975345569* PP

        Zw10 314 eliweelseliikdcLvksiPen 336
                    w el  ++++dcL ++  ++
  KOO24966.1 350 PTFWGELRRAVVEDCLLPALATE 372
                 ****************9987665 PP

  == domain 2  score: 63.5 bits;  conditional E-value: 1.6e-21
        Zw10 382 askkcqdvlvkArkLltseihntVkvtpd.......skvkipklsklkaeeklklkkyendlar.elsenekellsltfafprCrvSesvqklmeLaek 472
                 a  +c +vl  Ar ++ +   + V            +  +     ++ ae++    ++ + +a  + se   e+    + fprCrvS  +  l+ L+  
  KOO24966.1 459 AAMRCEEVLHDARRIIYERSADSVELPASsaplsgmAACDAGAAGAPAAEHDGDPPAKAAGVAVaARSEAHCEVRLGALHFPRCRVSTRATRLLRLLDA 557
                 5679*********************6555555566566667777777777777777777777774556666677779********************** PP

        Zw10 473 tLkeattssaecavqLfytvrnifelyvdvvPtyhkenLeklpqlsalfhNnCmYiahllltlgfefraelp 544
                 tL++a+++  e+a  L+  +r+++ l+ +  P   +e L  +p+++ l+hN+   + h  ltlg ++  +lp
  KOO24966.1 558 TLEDACACGPEGAGLLYARARDVIDLFLAAAPHRSAEVL--VPHVALLLHNDARLLRHRCLTLGLQYARRLP 627
                 *************************************99..7*************************98886 PP

>> Tenui_N  Tenuivirus/Phlebovirus nucleocapsid protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.9   0.2   0.00022       1.9      98     142 ..      16      60 ..       1      63 [. 0.83
   2 ?    1.1   0.2     0.027   2.4e+02     116     185 ..     405     473 ..     395     477 .. 0.87

  Alignments for each domain:
  == domain 1  score: 7.9 bits;  conditional E-value: 0.00022
     Tenui_N  98 rYglvesvgdnardaiTLsRvaalfagvtlqvvkqvsgaklavds 142
                 + g   +vgd+a   + L Rv +l a+   +vv+ v+ +k+av++
  KOO24966.1  16 TLGAAVDVGDPAAVSAALVRVGQLIAKAEAEVVRIVEAEKPAVER 60 
                 5566667******************************99*99975 PP

  == domain 2  score: 1.1 bits;  conditional E-value: 0.027
     Tenui_N 116 sRvaalfagvtlqvvkqvs.gaklavdssdldslgldylladmvpqfigLkdetlpskkeslkalldahll 185
                 +Rv a+ a v+ +vv+  +  +     +s++ +  l   l ++v + + L++  +    + +++l da+++
  KOO24966.1 405 GRVHAMAASVSTRVVALHErLQRRVAATSPMVAAALSAELGMLVEAAARLEARAAA--MRCEEVLHDARRI 473
                 8**************988866677778899*********************99999..8889999888765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (882 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       420  (0.0234257); expected 358.6 (0.02)
Passed bias filter:                      233  (0.0129957); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.64u 0.25s 00:00:00.89 Elapsed: 00:00:00.45
# Mc/sec: 5919.01
//
Query:       KOO24967.1  [L=98]
Description: hypothetical protein Ctob_002444, partial [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    0.00032   21.5   4.0     0.0028   18.5   2.0    2.8  2  SHIPPO-rpt  Sperm-tail PG-rich repeat


Domain annotation for each model (and alignments):
>> SHIPPO-rpt  Sperm-tail PG-rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.5   2.0   1.6e-07    0.0028       1      28 [.      13      55 ..      13      58 .. 0.73
   2 ?    1.5   0.0     0.038   6.8e+02       7      12 ..      82      87 ..      80      98 .] 0.64

  Alignments for each domain:
  == domain 1  score: 18.5 bits;  conditional E-value: 1.6e-07
  SHIPPO-rpt  1 lPGPGtYkpnk................nvpsnksaPkysfGqrk 28
                +PGPG+Y+p+                 +  s  ++   sfG ++
  KOO24967.1 13 TPGPGAYDPKVtekgdgleanayttesHNVSA-QKGTASFGIKS 55
                7**********999999999999665433333.45566688877 PP

  == domain 2  score: 1.5 bits;  conditional E-value: 0.038
  SHIPPO-rpt  7 Ykpnkn 12
                Y+pn n
  KOO24967.1 82 YNPNVN 87
                ****93 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (98 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       227  (0.0126611); expected 358.6 (0.02)
Passed bias filter:                      184  (0.0102627); expected 358.6 (0.02)
Passed Vit filter:                         9  (0.00050198); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.26s 00:00:00.62 Elapsed: 00:00:00.40
# Mc/sec: 727.21
//
Query:       KOO24968.1  [L=251]
Description: hypothetical protein Ctob_002445 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.7e-28   98.7   0.1    1.5e-25   89.8   0.0    2.1  2  GrpE           GrpE
  ------ inclusion threshold ------
      0.011   15.8   1.0      0.025   14.6   1.0    1.5  1  TPR_MLP1_2     TPR/MLP1/MLP2-like protein
       0.34   11.0   5.3       0.46   10.6   3.5    1.9  2  TolA_bind_tri  TolA binding protein trimerisation


Domain annotation for each model (and alignments):
>> GrpE  GrpE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.6   0.5   0.00093       5.6      18      60 ..      47      89 ..      35      96 .. 0.85
   2 !   89.8   0.0   2.5e-29   1.5e-25      34     165 ..     116     244 ..     110     245 .. 0.94

  Alignments for each domain:
  == domain 1  score: 6.6 bits;  conditional E-value: 0.00093
                CCCTTCHHHCTTSCCCCCCTTTTTTTTHHHHHHHHHHHHHHHH CS
        GrpE 18 eeeleelekevkelkekllrllaefenlrkrtekekeeakkfa 60
                 ++l ++++e +elk +l+ + +++e +++ +e++++e   ++
  KOO24968.1 47 TSQLRRIRNERAELKAELEDAIQDLELAQEMMERQRKEYLMYG 89
                5678889999************************999876665 PP

  == domain 2  score: 89.8 bits;  conditional E-value: 2.5e-29
                 CCCTTTTTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC..HHH-HHHHHHHHHHHHHHHHHHHHHTT-EE---T.TSB--TTTEEEEEE CS
        GrpE  34 kllrllaefenlrkrtekekeeakkfaiekfakdLLpvlDnleralksakeneeekslleGvemtlkqllkiLekhgvekiepk.gepFDpnlheavst 131
                 +l rl +e+  lr+r + e ++a++f+  +++k+L p lD+++ a ++a       + +eG+++t+  ll +L+ hgve+++p  g++FDp+++ea++t
  KOO24968.1 116 ALARLSQEVVDLRRRGAVEVAKAERFGAASLVKSLAPALDAMDAAAEHA------TADAEGIRLTRSTLLAALHDHGVEPLAPRvGDAFDPQTMEAMFT 208
                 57899*****************************************984......33468*************************************** PP

                 ECSSC....TBEEEEEE--EEET.TEEEE-EEEEEE CS
        GrpE 132 vedde.keegtvvevvqkGYklk.drvlRpAmVkVs 165
                 v+ ++ ++ g+v +v++ GY ++ +r++R+++V+V 
  KOO24968.1 209 VPVADgAPTGKVEKVIRPGYVIHrERLVRASQVGVG 244
                 ***999999**************9**********96 PP

>> TPR_MLP1_2  TPR/MLP1/MLP2-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.6   1.0   4.2e-06     0.025      63     101 ..      47      85 ..      38      87 .. 0.90

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 4.2e-06
  TPR_MLP1_2  63 reelnelkaeiaelkaeaesakaeleeseesweeqkeel 101
                  ++l ++++e+aelkae+e+a ++le ++e +e+q++e+
  KOO24968.1  47 TSQLRRIRNERAELKAELEDAIQDLELAQEMMERQRKEY 85 
                 5789999*****************************997 PP

>> TolA_bind_tri  TolA binding protein trimerisation
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   3.5   7.8e-05      0.46       9      60 ..      34      86 ..      33      89 .. 0.85
   2 ?   -0.9   0.0      0.31   1.8e+03      27      43 ..     117     135 ..     115     139 .. 0.71

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 7.8e-05
  TolA_bind_tri  9 LErilearsqlllelqqqlealqqelreLRGqiEelqyql...eqleerQrdlYl 60
                   LEr l a   +   + +ql + ++e +eL+ ++E+   +l   +++ erQr+ Yl
     KOO24968.1 34 LERTLTA--GAVDVMTSQLRRIRNERAELKAELEDAIQDLelaQEMMERQRKEYL 86
                   7888888..778889********************9999933346778***9996 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 0.31
  TolA_bind_tri  27 lealqqelreLR..GqiEe 43 
                    l +l+qe+ +LR  G +E+
     KOO24968.1 117 LARLSQEVVDLRrrGAVEV 135
                    6789999999953366665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (251 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1226  (0.0683808); expected 358.6 (0.02)
Passed bias filter:                      811  (0.045234); expected 358.6 (0.02)
Passed Vit filter:                       102  (0.00568911); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.49u 0.27s 00:00:00.76 Elapsed: 00:00:00.43
# Mc/sec: 1761.21
//
Query:       KOO24969.1  [L=396]
Description: udp-glucose 4-epimerase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.4e-61  208.7   0.0    2.2e-61  208.1   0.0    1.3  1  GDP_Man_Dehyd    GDP-mannose 4,6 dehydratase
    8.3e-56  189.1   0.0    1.1e-55  188.8   0.0    1.1  1  Epimerase        NAD dependent epimerase/dehydratase family
    1.8e-17   63.3   0.0    6.3e-17   61.5   0.0    1.7  2  3Beta_HSD        3-beta hydroxysteroid dehydrogenase/isomeras
      7e-15   54.9   0.0      1e-14   54.3   0.0    1.2  1  RmlD_sub_bind    RmlD substrate binding domain
    7.3e-15   54.9   0.0      4e-14   52.4   0.0    2.0  1  Polysacc_synt_2  Polysaccharide biosynthesis protein
    2.5e-08   33.6   0.4    3.8e-08   33.0   0.4    1.3  1  adh_short        short chain dehydrogenase
    9.2e-08   31.6   0.1    3.2e-06   26.5   0.1    2.4  1  NAD_binding_4    Male sterility protein
    2.7e-07   30.7   0.3    5.4e-07   29.7   0.3    1.4  1  KR               KR domain
    4.3e-06   26.8   0.0    7.1e-06   26.0   0.0    1.3  1  NAD_binding_10   NAD(P)H-binding
    3.4e-05   23.5   0.4     0.0015   18.2   0.3    2.1  2  NmrA             NmrA-like family
  ------ inclusion threshold ------
      0.046   13.3   0.2      0.074   12.6   0.2    1.3  1  adh_short_C2     Enoyl-(Acyl carrier protein) reductase


Domain annotation for each model (and alignments):
>> GDP_Man_Dehyd  GDP-mannose 4,6 dehydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  208.1   0.0   1.3e-64   2.2e-61       1     331 [.      44     363 ..      44     364 .. 0.84

  Alignments for each domain:
  == domain 1  score: 208.1 bits;  conditional E-value: 1.3e-64
                    EEETTTSHHHHHHHHHHHHCT-CCEEEEEEESS-TTHHHHHCTTT...TTGCCEEEEE--TT-HHHHHHHHHHHT-SEEEE--S---HHHHTTSHH CS
  GDP_Man_Dehyd   1 LiTGiaGfiGsylaelLlekgyevhgivrrsssfntgriehlakdpkeeleenlklhkgDltDssslerllaevqpdevynLAAqshVdvsfekPe 96 
                    L+TG+ G+iGs+++  Ll+ gy+v++ +++++s n++ +++++      + ++++++++D+++++ l  ++a++++d+v+++A+ ++V++s+ kP 
     KOO24969.1  44 LVTGGVGYIGSHTVLELLNAGYDVVVADNLCNS-NIECLHRVQV----LAGRDVEFYQVDIREKAGLAAVFAKHKIDAVIHFAGLKAVGESVAKPL 134
                    9*************************9999987.6666655543....34679******************************************* PP

                    HHHHHHTHHHHHHHHHHHHCT..TTSEEEEEEEGGGG-S-SSSSB-TTS-----SHHHHHHHHHHHHHHHHHHHH-.--EEEEEE-E....EESTT CS
  GDP_Man_Dehyd  97 ytaevnvlGtlrLLeairalglekkvrfyqaStsEvYGkvqevpqtEttpfyPrsPYaaaKlyadwivvnyreayg.lfavngilfn....hespr 187
                     +++vnv Gtl+L+e++ ++g++    ++++S+++vYG++++vp+tE+ p+ P++PY+ +Kl+ + i  +   + +   ++  ++fn    h s  
     KOO24969.1 135 LYYQVNVEGTLNLVEVMNEAGCH---NIVFSSSATVYGDPASVPVTEDFPTGPTNPYGQSKLMNEIILGDVAASDKrWNVCLLRYFNpvgaHPSGQ 227
                    ********************985...6899******************************************99872579*******999999999 PP

                    S-TT..SCCCHHHHHHHHHHTTS-C-EEC.TTTT-EEEEEEHHHHHHHHHHHHHCSS---EEE-TT-EEECHHCHHCCHHCCCHHHHHH....... CS
  GDP_Man_Dehyd 188 rget..fvtrkitravarialgkqevlyl.GnldakRdwghvkDyveamwlmlqqdkpedyviatgethsvrefvelaflelgktiewegkge.ee 279
                     ge+   + ++++++++++a+gk+++l + G  +++ d + v+Dy+++++l+              +   ++++ ++  + + +  + +g ++ ++
     KOO24969.1 228 IGEDpkGIPNNLMPFIQQVAVGKRPKLSVfGSDYPTADGTGVRDYIHVVDLAKG------------HLAALKKLETAPGKVVYNLGTGTGYSVlDM 311
                    998655899***************999987********************8332............222222222222222222222222222123 PP

                    .......TTGGCCCEECGG--SS--SB--B-THHHHHHH----SS-HHHHHHH CS
  GDP_Man_Dehyd 280 vgra.kesgkvvvevdpkyfrpgevdlllgdaskakeeLgWkpkvsfeelvre 331
                    v++  k+ g+   +++   +rpg+v  +++d+s a +eLgW+++ ++e+++++
     KOO24969.1 312 VKAYsKACGR-DLPYELTARRPGDVAVVYADPSFATKELGWRAELGMEQMCAD 363
                    3333144555.6899***********************************986 PP

>> Epimerase  NAD dependent epimerase/dehydratase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  188.8   0.0   6.5e-59   1.1e-55       1     241 []      43     301 ..      43     301 .. 0.95

  Alignments for each domain:
  == domain 1  score: 188.8 bits;  conditional E-value: 6.5e-59
                 EEEETTTSHHHHHHHHHHHHCTSEEEEEES-STTTTCHHCHHC........EEEE--TT-HHHHHHHHHHHT-SEEEE--S---HHHHHHSHHHHHHHH CS
   Epimerase   1 ilVtGatGfiGsalvkallekgyevigldrlssasntarledl........elveldltdrsalerlfkeeqpdavihlAavggvaassedpadfiekn 91 
                 +lVtG+ G+iGs++v +ll++gy+v++ d+l  +sn ++l+++        e++++d+++++ l+++f+++++davih+A+ + v++s+ +p  +++ n
  KOO24969.1  43 VLVTGGVGYIGSHTVLELLNAGYDVVVADNL-CNSNIECLHRVqvlagrdvEFYQVDIREKAGLAAVFAKHKIDAVIHFAGLKAVGESVAKPLLYYQVN 140
                 79*****************************.5556666666679****************************************************** PP

                 THHHHHHHHHHHHHTCTEEEEEEEGGGGTSCSSSSBSTCSTTS----SSHHHHHHHHHHHHHHHHHHHH.T-EEEEEEESEEESTT.......S-TTST CS
   Epimerase  92 lqgtlnlleaarkagvkrllflsSsevYGkdaeqpkeettltgplkpnspYaaaKlageklveayaaqy.glnaiilrlfnlyGpr.......ngegev 182
                 ++gtlnl+e++++ag+++++f sS++vYG++a++p +e+    p+ p++pY+ +Kl+ e ++ ++aa+   +n++ lr+fn +G++       +++g +
  KOO24969.1 141 VEGTLNLVEVMNEAGCHNIVFSSSATVYGDPASVPVTEDF---PTGPTNPYGQSKLMNEIILGDVAASDkRWNVCLLRYFNPVGAHpsgqigeDPKGIP 236
                 ****************************************...9************************989******************9997777889 PP

                 TSHHHHHHHHHHTTS.SSEEEET......TST-EEEEEEHHHHHHHHHHHHHHHTT-STTEEEEES CS
   Epimerase 183 srvipalirkilegk.qevtllg......dgtalRdflyveDvaeaillvlehvdagdkgeiyniG 241
                 ++++p +i++++ gk +++ ++g      dgt +Rd+++v D+a+++l++l++ ++ + + +yn+G
  KOO24969.1 237 NNLMP-FIQQVAVGKrPKLSVFGsdyptaDGTGVRDYIHVVDLAKGHLAALKKLETAPGKVVYNLG 301
                 99999.*********99************************************99977777***98 PP

>> 3Beta_HSD  3-beta hydroxysteroid dehydrogenase/isomerase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.5   0.0   3.8e-20   6.3e-17       1     154 [.      44     196 ..      44     230 .. 0.83
   2 ?   -0.8   0.0      0.37     6e+02     204     234 ..     261     291 ..     232     302 .. 0.85

  Alignments for each domain:
  == domain 1  score: 61.5 bits;  conditional E-value: 3.8e-20
   3Beta_HSD   1 vvtGgaGFlGralvkeLvrleelkevrvlDlrespelleelskvnvkk.....viegDvtdkdkleeal..egvdvvihlaslvdvag.kltedeimkv 91 
                 +vtGg G++G++ v eL++++   +v v+D   ++++ e l++v+v       + ++D+++k+ l ++   +++d+vih a+l  v   + +   +++v
  KOO24969.1  44 LVTGGVGYIGSHTVLELLNAG--YDVVVADNLCNSNI-ECLHRVQVLAgrdveFYQVDIREKAGLAAVFakHKIDAVIHFAGLKAVGEsVAKPLLYYQV 139
                 69*******************..5******7666665.556666655445588************99762267899**********9857778899*** PP

   3Beta_HSD  92 nvkGTrnvleacvkagvrvlvYtSsaevvgpnslgeeilngdEeleyeslhqdaypesKalaE 154
                 nv+GT n++e   +ag + +v+ Ssa v g+   + +++     +  ++ ++++y +sK + E
  KOO24969.1 140 NVEGTLNLVEVMNEAGCHNIVFSSSATVYGD-PASVPVT-----EDFPTGPTNPYGQSKLMNE 196
                 *****************************99.5555555.....4455567777777777776 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 0.37
   3Beta_HSD 204 fkigdeevlsdrvYvgNvawahilAaralqd 234
                 + ++d   + d++ v  +a+ h+ A ++l+ 
  KOO24969.1 261 YPTADGTGVRDYIHVVDLAKGHLAALKKLET 291
                 5577888899999*************99976 PP

>> RmlD_sub_bind  RmlD substrate binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.3   0.0   6.4e-18     1e-14       2     135 ..      42     198 ..      41     215 .. 0.92

  Alignments for each domain:
  == domain 1  score: 54.3 bits;  conditional E-value: 6.4e-18
                    EEEEESTTSHHHHHHHHHCTTTSEEEEEE-TT......................T--TTSHHHHHHHHHHH--SEEEE------HHHHHHSHHHHH CS
  RmlD_sub_bind   2 kilvtGanGqlGseLakqlaeeglevlaltre......................eldltdaeavaellkeakpdvvvnaAAytavDkaEseeeaay 75 
                    ++lvtG+ G +Gs+ + +l ++g++v+  ++                       ++d+++++ +a++++++k d+v++ A  +av +   ++ + y
     KOO24969.1  42 TVLVTGGVGYIGSHTVLELLNAGYDVVVADNLcnsnieclhrvqvlagrdvefyQVDIREKAGLAAVFAKHKIDAVIHFAGLKAVGESVAKPLLYY 137
                    68************************9997778899************************************************************ PP

                    HHHTHHHHHHHHHHHHCT-E.EEEEEEGGGS-S-TTS-B-TTS----SSHHHHHHHHHHHH CS
  RmlD_sub_bind  76 avnaeavealAeaaaavgal.LihvStDyVFdGekkrpYeeddetsPlnvYGrtKlaGEqa 135
                    +vn+e++ +l e+ +++g + +++ S+  V+   ++ p +ed +t+P n YG++Kl  E  
     KOO24969.1 138 QVNVEGTLNLVEVMNEAGCHnIVFSSSATVYGDPASVPVTEDFPTGPTNPYGQSKLMNEII 198
                    ******************8637788888899888999*******************98864 PP

>> Polysacc_synt_2  Polysaccharide biosynthesis protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.4   0.0   2.5e-17     4e-14       1     174 [.      43     222 ..      43     226 .. 0.83

  Alignments for each domain:
  == domain 1  score: 52.4 bits;  conditional E-value: 2.5e-17
                      EEEETTTSHHHHHHHHHHHHHB-SEEEEEES-HHHHHHHHHH......-TTEEEE....E--TT-HHHHHHHTT..T-SEEEE------HHHHH CS
  Polysacc_synt_2   1 vlvtGagGsiGselvrqilkkkpkkiillerdElklyeiekeleeelkkkklkveivpvigdvrdkerlekaleelkvdvvfhaAAlKhVPlve 94 
                      vlvtG+ G iGs+ v ++l+     ++  +    ++  +++     l+ ++++++      d+r+k+ l+ ++ ++k+d+v+h A lK V    
       KOO24969.1  43 VLVTGGVGYIGSHTVLELLNAGYDVVVADNLCNSNIECLHRVQ--VLAGRDVEFY----QVDIREKAGLAAVFAKHKIDAVIHFAGLKAVGESV 130
                      89******************99887776666666666666653..5666678777....78********************************* PP

                      HSHHHHHHHHHHHHHHHHHHHHHTT-SEEEEEEE.....GGG.........SS--SHHHHHHHHHHHHHHHGGG--SSS--EEEEEEE-EETTG CS
  Polysacc_synt_2  95 enpleaiktNvlgtenvieaaieagvkkvvliSt.....DKA.........vnPtnvmGatKrlaekllqalakeseekktkfvvvRfGNVlgS 174
                       +pl   + Nv gt n++e+  eag +++v+ S+     D A           Ptn +G +K++ e +l  +a++   k+ ++++ R+ N +g+
       KOO24969.1 131 AKPLLYYQVNVEGTLNLVEVMNEAGCHNIVFSSSatvygDPAsvpvtedfpTGPTNPYGQSKLMNEIILGDVAASD--KRWNVCLLRYFNPVGA 222
                      ******************************9886445555552221111115689**************9999988..7899******998876 PP

>> adh_short  short chain dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.0   0.4   2.4e-11   3.8e-08       1     118 [.      41     150 ..      41     173 .. 0.85

  Alignments for each domain:
  == domain 1  score: 33.0 bits;  conditional E-value: 2.4e-11
                 SEEEEESTTSHHHHHHHHHHHHTT-EEEEEESCHHHHHHHHHHHHHT.TSEEEEEE-TTTSHHHHHHHHHHHHHHHSSESEEEE---SS--SSGGGCSH CS
   adh_short   1 kvvlvtGassGIGraiakelakeGakvvvvdrseekleevakelkee.gakalaiqvDvtdreevealvekavkklgkldvLvnNAGitgsgpfselse 98 
                 ++vlvtG+ + IG  ++ el+++G++vvv+d+  +   e++  ++ + g+++ ++qvD+++++ + a+++k      k+d++++ AG++ +g+    s 
  KOO24969.1  41 QTVLVTGGVGYIGSHTVLELLNAGYDVVVADNLCNSNIECLHRVQVLaGRDVEFYQVDIREKAGLAAVFAKH-----KIDAVIHFAGLKAVGE----SV 130
                 58*******************************99999*******999*********************998.....9**********54433....45 PP

                 HHHHHHHHHHTHHHHHHHHH CS
   adh_short  99 eewervievNltgvflltra 118
                 ++   +++vN+ g+++l++ 
  KOO24969.1 131 AKPLLYYQVNVEGTLNLVEV 150
                 55667799999999998765 PP

>> NAD_binding_4  Male sterility protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.5   0.1   1.9e-09   3.2e-06       1     208 [.      45     221 ..      45     260 .. 0.73

  Alignments for each domain:
  == domain 1  score: 26.5 bits;  conditional E-value: 1.9e-09
                    EE-TTSHHHHHHHHHHHHHS-.TEEEEEE-SSSHHHHHHHHHHHT-SS-HHHHHHHHHTTTEEEEE--TTSGGGG--HHHHHHHHHH--EEEE--S CS
  NAD_binding_4   1 lTGaTGFLGkvLlekLLrttpevkiyllvRaksgesaeeRleeelekkelfsallkelaerikvveGDlseprlGLseedlqelaeevdviihsaA 96 
                    +TG+ G++G++ + +LL+   +  +++   ++s+ + ++R+ + l            + + +++++ D+ e+  GL +  ++   +++d++ih a+
     KOO24969.1  45 VTGGVGYIGSHTVLELLNAGYD-VVVADNLCNSNIECLHRV-QVL------------AGRDVEFYQVDIREKA-GLAAVFAK---HKIDAVIHFAG 122
                    5777777777777777777765.333444456666666666.222............2334667777777665.77765554...47********* PP

                    S-S.STTSSE...EHHHHHHHHHHHHHHHTSSS--.-EEEEEEGGGTTS-TTT--SSS-H......HHH--EEEETTTCCCHHHHHHHHHHHHHHH CS
  NAD_binding_4  97 tvnfdepyke...llrvNveGtrevlelakklkklkvllhvSTayvngeregeveekvyeegekeekldederaklkglpntYeqsKalaEklvre 189
                       + e++ +    ++vNveGt +++e  ++      +++ S+a+v+g+  +                   +++  +g +n Y qsK + E ++ +
     KOO24969.1 123 LKAVGESVAKpllYYQVNVEGTLNLVEVMNEAGCH-NIVFSSSATVYGDPASV----------------PVTEDFPTGPTNPYGQSKLMNEIILGD 201
                    *******99987789***************99888.99***********9953................4567778999***************87 PP

                    HHH.HH---EEEEEE-EEE- CS
  NAD_binding_4 190 arr.rsglpvvivRpsiitg 208
                     +   ++++v+ +R  + +g
     KOO24969.1 202 VAAsDKRWNVCLLRYFNPVG 221
                    55304466777777655555 PP

>> KR  KR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.7   0.3   3.3e-10   5.4e-07       2     144 ..      42     171 ..      41     175 .. 0.81

  Alignments for each domain:
  == domain 1  score: 29.7 bits;  conditional E-value: 3.3e-10
                 EEEEETTTSHHHHHHHHHHHHHHS-EEEEE-SS..--HHHHHHHHHHHHT.T-EEEE----TT-HHHHHHHHHHHHHHSS---EEEE---------TTT CS
          KR   2 tylitGGlGgLGlelarwlaekgarhlvllsRsaaadedskaliaeleal.gaevevvaaDvsdkdavealleeikaeeppikGvihaAgvlrdkllee 99 
                 t+l+tGG+G +G +++  l++ g   +v    +    +++ + +++++ l g +ve++++D+ +k+ ++a++++ k     i  vih Ag+ + +    
  KOO24969.1  42 TVLVTGGVGYIGSHTVLELLNAGYDVVVADNLC----NSNIECLHRVQVLaGRDVEFYQVDIREKAGLAAVFAKHK-----IDAVIHFAGLKAVGE--- 128
                 78*********************9988876666....33344555555544889******************9987.....9********976543... PP

                 --HHHHHHHHTTTTHHHHHHHHHTTTS--SEEEEEEEHHHHH--T CS
          KR 100 mtaedleqvlapKvkGawnLhelledesldffvlfSSiagllgsa 144
                  + ++    ++  v+G+ nL e++++    + ++fSS a+++g +
  KOO24969.1 129 -SVAKPLLYYQVNVEGTLNLVEVMNE-AGCHNIVFSSSATVYGDP 171
                 .455556678999***********96.555667899999999977 PP

>> NAD_binding_10  NAD(P)H-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.0   0.0   4.3e-09   7.1e-06       1     107 [.      47     172 ..      47     209 .. 0.73

  Alignments for each domain:
  == domain 1  score: 26.0 bits;  conditional E-value: 4.3e-09
                     TTTSHHHHHHHHHHHHC-T-EEEEEETT........HHHCHHHHCTTTCEEEE--TT-CCHHHHHHTT-..SEEEES---TCC............ CS
  NAD_binding_10   1 GAtGkvGrllvkellargghevtalvRn........peklaeleaeeglevvegdvtdvedlaealkga..daVvsalggggk............ 73 
                     G+ G +G++ v ell++g ++v+ ++ n         ++++ l a   +e  ++d+ +++ la++++ +  daV+  +g ++             
      KOO24969.1  47 GGVGYIGSHTVLELLNAG-YDVV-VADNlcnsniecLHRVQVL-AGRDVEFYQVDIREKAGLAAVFAKHkiDAVIHFAGLKAVgesvakpllyyq 138
                     899**************5.9974.5566552332222344444.679*******************96644899888855555334555555555 PP

                     .HHHHHHHHHHHHHHCT--EEEEEEETTTTSGCGC CS
  NAD_binding_10  74 .deegaknivdaakeagvkRfvlvsaigvgdevpg 107
                      + eg+ n+v++++eag   +v+ s++ v+ + p 
      KOO24969.1 139 vNVEGTLNLVEVMNEAGCHNIVFSSSATVYGD-PA 172
                     54455************************963.22 PP

>> NmrA  NmrA-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.2   0.3   9.1e-07    0.0015       1     102 [.      43     164 ..      43     176 .. 0.88
   2 ?    3.3   0.0     0.032        52     182     232 ..     274     326 ..     237     338 .. 0.80

  Alignments for each domain:
  == domain 1  score: 18.2 bits;  conditional E-value: 9.1e-07
                 EEESSTTSHHHHHHHHHHHHHT-EEEEEES-S.......-SHHHHHHHHSTTEEEES-TT-HHHHHHHHT..T-SEEEE---GG.............S- CS
        NmrA   1 IlviGaTGrqGksvvrallkaghkvralvRdt.......kselakslkeaGvelvkgdlddkeslvealk..gvdvvfsvtgfy.............sk 77 
                 +lv+G+ G++G++ v  ll+ag++v +   d          ++++ l+ + ve+ + d+ +k+ l++++   + d+v+   g++             + 
  KOO24969.1  43 VLVTGGVGYIGSHTVLELLNAGYDVVVA--DNlcnsnieCLHRVQVLAGRDVEFYQVDIREKAGLAAVFAkhKIDAVIHFAGLKavgesvakpllyyQV 139
                 79**********************9653..333566676667899999*******************99722579999999988999************ PP

                 HHHHHHHHHHHHHHHS-SEEEEEE- CS
        NmrA  78 eiedgkklvdAakeaGvkhfiySsl 102
                 ++e   +lv++  eaG  ++++Ss 
  KOO24969.1 140 NVEGTLNLVEVMNEAGCHNIVFSSS 164
                 ***********************96 PP

  == domain 2  score: 3.3 bits;  conditional E-value: 0.032
                 HHHHHHHHHHHHHHHHHHH..TTEEEEE-SEEE-HHHHHHHHHHHHTS-EEEE CS
        NmrA 182 aeeDiGafvikilkdprkl..kgkriklagntlsgneivelfekkigktvkYt 232
                 ++ D ++  +++lk+ +++  k+++   +g  +s+ ++v++++k+ g+   Y+
  KOO24969.1 274 HVVDLAKGHLAALKKLETApgKVVYNLGTGTGYSVLDMVKAYSKACGRDLPYE 326
                 67899999999999988884444445567888****************98885 PP

>> adh_short_C2  Enoyl-(Acyl carrier protein) reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.2   4.6e-05     0.074       6      82 ..      52     126 ..      48     166 .. 0.80

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 4.6e-05
                   HHHHHHHHHHHTT-EEEEEESSGGH.HHHHHHHHHHTTSEE..EE--TTSHHHHHHHHHHHHHHHSSEEEEEE-----EG CS
  adh_short_C2   6 IGraiAkalaeeGaevvltdlneea.kkrveelaeelgaev..lecDVtdeeqvealveevvekfgklDilvnnagiapk 82 
                   IG +++ +l ++G++vv++d   ++  + +++++   g++v  +++D+++++ ++a++++      k+D +++ ag    
    KOO24969.1  52 IGSHTVLELLNAGYDVVVADNLCNSnIECLHRVQVLAGRDVefYQVDIREKAGLAAVFAK-----HKIDAVIHFAGLKAV 126
                   99******************87777567777777777766555***************99.....689999999998765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (396 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       406  (0.0226449); expected 358.6 (0.02)
Passed bias filter:                      387  (0.0215851); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.53u 0.27s 00:00:00.80 Elapsed: 00:00:00.42
# Mc/sec: 2820.27
//
Query:       KOO24970.1  [L=423]
Description: serine threonine kinase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    4.3e-58  196.8   0.0    5.1e-58  196.5   0.0    1.0  1  Pkinase         Protein kinase domain
    7.4e-26   91.0   0.0    1.1e-25   90.4   0.0    1.2  1  Pkinase_Tyr     Protein tyrosine kinase
    1.2e-06   28.0   0.0    1.5e-05   24.5   0.0    2.0  2  Kinase-like     Kinase-like
     0.0024   16.9   0.0     0.0045   16.0   0.0    1.3  1  Haspin_kinase   Haspin like kinase domain
     0.0037   16.6   0.0     0.0057   16.0   0.0    1.2  1  Kdo             Lipopolysaccharide kinase (Kdo/WaaP) family
  ------ inclusion threshold ------
      0.012   15.6   0.0       0.03   14.3   0.0    1.6  1  APH             Phosphotransferase enzyme family
       0.11   12.1   0.1        0.2   11.2   0.1    1.4  1  Choline_kinase  Choline/ethanolamine kinase


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  196.5   0.0     2e-61   5.1e-58       4     264 .]      80     356 ..      77     356 .. 0.91

  Alignments for each domain:
  == domain 1  score: 196.5 bits;  conditional E-value: 2e-61
                 EEEEEEESSEEEEEEEETTTTEEEEEEEEECHCHCHHHHHHHHHHHHHHHHHSCTTB--EEEEEEE.....SSEEEEEEE--TTEBHHHHHHHHSS..- CS
     Pkinase   4 leklGeGsfGkVykaveketgkivAvKkikkekakkkkekkvlrEikilkklkhpnivrlyevfee.....kdelylvleyveggeladllerkgs..l 95 
                  +k GeG++G  y+a +k+tg++ AvK+++ +k +    +++++E +il++l+ pn++ + +         kd++++++e+++ggel+d + ++g+  +
  KOO24970.1  80 GKKYGEGGYGATYSAADKSTGEQLAVKILDMRKVRI---ETIQKEAHILETLQNPNVISVRGHGAGyggkhKDHYFIFMELASGGELFDQVIDRGAdaM 175
                 6889**************************998886...569******************998877788889**************999888555445* PP

                 -HHHHHHHHHHHHHHHHHHHHTTEE-SS-SGGGEEEETTTEEEE-SGTTSEESSSSCS.........BCTTTSCGGGS-HHHHTTSCB.SHHHHHHHHH CS
     Pkinase  96 seeeakkiakqilegleylHskgiiHrDlKpeNiLidekgelKitDFGlakelesssk.........ltsfvgtseYlAPEvlkeney.skkvDvWslG 184
                 +e  a+ ++ q+l g++y+H +g+ HrDlK eN+L++ +g+lK++DFGl+  +  + +         l++++g++ Y APEvl +++y + ++D+WslG
  KOO24970.1 176 PEPYARGFFCQMLDGVNYCHIAGVAHRDLKLENVLLNAEGKLKLIDFGLSHVYPVNRStgfvdrskpLRDVCGSKSYAAPEVLAAKGYdGFAADMWSLG 274
                 ****************************************************98888789****************************9********** PP

                 HHHHHHHHSS-STTTSSHHHHH..HHHHHTHHHHHHHCTSHH...HHHTTS-HHHHHHHHHHT-SSGCCSTTHHHHHTSGGG CS
     Pkinase 185 vilyelltgkppfsgekgkekv..ekeldqlekilkilgetkeklpeaseiseeakdllkkllkkdpkkRltaeellqhpyl 264
                 v l+ +l+g  p+ + ++++    + ++ q +    + + + + +++a+++s+e+ dll+ ll+ dp++R+t++++ +hp++
  KOO24970.1 275 VCLFAMLSGFFPLDEATEQDWRfpRLHVAQSHGASTVHTVYGFYSRTARHLSREVVDLLDGLLRIDPSRRMTMAQCREHPWV 356
                 **************7777764411345556677777777889999************************************6 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   90.4   0.0   4.3e-29   1.1e-25       2     257 ..      78     352 ..      77     353 .. 0.80

  Alignments for each domain:
  == domain 1  score: 90.4 bits;  conditional E-value: 4.3e-29
                  EEEEEEEEESSEEEEEEEEETTTTSSEEEEEEEEESTTSSHHHHHHHHHHHHHHHTS-BTTB--EEEEEE.....SSSSEEEEEE--TTEBHHHHHHH CS
  Pkinase_Tyr   2 elgkklGeGafGkVvegtlkgekekkevkVavKtlkeeateeekeelleeakimkklkhpnivkllgvct.....keepllivteyvkgGdLlkfLrk 94 
                  +lgkk GeG +G  +++  k    ++ ++ avK+l  ++++ + e + +ea+i+++l++pn++++ g        ++++++i +e+++gG+L + + +
   KOO24970.1  78 NLGKKYGEGGYGATYSAADK----STGEQLAVKIL--DMRKVRIETIQKEAHILETLQNPNVISVRGHGAgyggkHKDHYFIFMELASGGELFDQVID 169
                  789999******99999888....8999*******..66667779******************99988777687666678999*********999999 PP

                  TCTTTSBHHHHHHHHHHHHHHHHHHHHTTEEEST-SGGGEEEEETTEEEE-STTTHEET.TTSSEEEETTSST.....SGGGGS-HHHHHHSEEE.HH CS
  Pkinase_Tyr  95 kekekltlkdllsfalqvAkGmeyLeskklvHrdlaarNvLlsenkvvkisDfGLardi.ekddeyvkkeeak.....lpvkWmapEslkekkft.sk 185
                  +  +++       f  q+ +G++y +   + Hrdl   NvLl+ + + k+ DfGL++    ++++  +++++       +  + apE+l +k +   +
   KOO24970.1 170 RGADAMPEPYARGFFCQMLDGVNYCHIAGVAHRDLKLENVLLNAEGKLKLIDFGLSHVYpVNRSTGFVDRSKPlrdvcGSKSYAAPEVLAAKGYDgFA 267
                  9899*****************************************************98444444433333331111145689**********97469 PP

                  HHHHHHHHHHHHHHTTSSGT...............TTTSHHHHHHHHHHTTEES-BBTTSBHHHHHHHHHHT-SSGGGS--HHHHHH CS
  Pkinase_Tyr 186 sDvWsfGvllwEiftlgesp...............ypglkneevleklkegkrlekpekcpeelyelmkkcweedpeeRptfselve 257
                  +D+Ws Gv+l+ +++ g  p               +++ + +++++++  g   ++ ++ ++e+ +l+   ++ dp++R t+++++e
   KOO24970.1 268 ADMWSLGVCLFAMLS-GFFPldeateqdwrfprlhVAQSHGASTVHTV-YGFYSRTARHLSREVVDLLDGLLRIDPSRRMTMAQCRE 352
                  9*************9.99995555555555443322222222233333.34445677788999999999999999999999999876 PP

>> Kinase-like  Kinase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.3   0.0     0.068   1.7e+02      22      48 ..      85     111 ..      74     132 .. 0.83
   2 !   24.5   0.0   5.7e-09   1.5e-05     155     288 .]     189     344 ..     164     344 .. 0.78

  Alignments for each domain:
  == domain 1  score: 1.3 bits;  conditional E-value: 0.068
  Kinase-like  22 kgdrsvvfevkdqetgeplavkvfllp 48 
                  +g+ ++ + + d+ tge+lavk+  + 
   KOO24970.1  85 EGGYGATYSAADKSTGEQLAVKILDMR 111
                  56677899**************98775 PP

  == domain 2  score: 24.5 bits;  conditional E-value: 5.7e-09
  Kinase-like 155 rlaanLqakglvhgkftvdnllldekgglmlggf..taLvragtkvvl.seve........kgfaPpEllgsrggytrknktkmthkldaWqlGlviy 241
                    + + +  g+ h +++ +n+ll+ +g+l+l +f  ++ + +  +       +        k++a pE+l+++g           ++ d W lG+  +
   KOO24970.1 189 DGVNYCHIAGVAHRDLKLENVLLNAEGKLKLIDFglSHVYPVNRSTGFvDRSKplrdvcgsKSYAAPEVLAAKGY--------DGFAADMWSLGVCLF 278
                  557788999**********************99833577766554332122224566669999999999999554........469************ PP

  Kinase-like 242 riwclklPltlateeakeew.....................kfklck.kipekvkaLlkkfLqlsqedR 288
                   + +   Pl++ate   ++w                      +++ + + + +v  Ll ++L+ +  +R
   KOO24970.1 279 AMLSGFFPLDEATE---QDWrfprlhvaqshgastvhtvygFYSRTArHLSREVVDLLDGLLRIDPSRR 344
                  **********9987...4776688888888888888888876666664678888888888888776655 PP

>> Haspin_kinase  Haspin like kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.0   1.7e-06    0.0045     230     257 ..     201     228 ..     198     242 .. 0.86

  Alignments for each domain:
  == domain 1  score: 16.0 bits;  conditional E-value: 1.7e-06
  Haspin_kinase 230 HRdLhldniLvdknlnvtlidlklsRle 257
                    HRdL+l+n+L++++++  lid+ ls + 
     KOO24970.1 201 HRDLKLENVLLNAEGKLKLIDFGLSHVY 228
                    ***********************99876 PP

>> Kdo  Lipopolysaccharide kinase (Kdo/WaaP) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.0   2.2e-06    0.0057      57     166 ..     117     222 ..      99     232 .. 0.74

  Alignments for each domain:
  == domain 1  score: 16.0 bits;  conditional E-value: 2.2e-06
         Kdo  57 ravrEfrllkrLeeagvavpkpvaagavkvgleyrAlllterlegaqdLedllakwae.laeelkrallkavgrliaklhragvnHadlyaknillqqe 154
                 ++ +E ++l+ L++  v   +   ag+ ++  + + ++ +e   g +  ++++ ++a+ ++e   r  + +    ++  h agv H+dl   n+ll++e
  KOO24970.1 117 TIQKEAHILETLQNPNVISVRGHGAGYGGKH-KDHYFIFMELASGGELFDQVIDRGADaMPEPYARGFFCQMLDGVNYCHIAGVAHRDLKLENVLLNAE 214
                 5666677777777777766666666665443.34456667766666666777777666666667777777777778889******************** PP

         Kdo 155 eeeeaeiwliDl 166
                 +    ++ liD+
  KOO24970.1 215 G----KLKLIDF 222
                 *....******9 PP

>> APH  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   0.0   1.2e-05      0.03     168     200 ..     199     229 ..     194     231 .. 0.83

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 1.2e-05
                 EE-SS-SGGGEEEC..TTEEEEE---TT-EEEE CS
         APH 168 llHgDlhpgNllvdpddgrvtGviDfedaglgp 200
                 + H+Dl++ N+l++ ++g++  +iDf+++++ p
  KOO24970.1 199 VAHRDLKLENVLLN-AEGKL-KLIDFGLSHVYP 229
                 67************.55666.6*****998766 PP

>> Choline_kinase  Choline/ethanolamine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.1   7.8e-05       0.2     147     172 ..     199     223 ..     183     230 .. 0.87

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 7.8e-05
                     EE-S--SGGGEEE.-CTTEEEE--GT CS
  Choline_kinase 147 fcHnDlqegNillnkeekklvlIDFE 172
                      +H Dl  +N+ll + e+kl lIDF 
      KOO24970.1 199 VAHRDLKLENVLL-NAEGKLKLIDFG 223
                     689**********.99*********6 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (423 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       485  (0.0270511); expected 358.6 (0.02)
Passed bias filter:                      417  (0.0232584); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.53u 0.27s 00:00:00.80 Elapsed: 00:00:00.44
# Mc/sec: 2919.08
//
Query:       KOO24971.1  [L=982]
Description: hypothetical protein Ctob_006108 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.017   14.9   0.3      0.043   13.6   0.0    1.7  2  LBR_tudor  Lamin-B receptor of TUDOR domain


Domain annotation for each model (and alignments):
>> LBR_tudor  Lamin-B receptor of TUDOR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.0      0.33     6e+03      22      44 ..      45      67 ..      43      69 .. 0.71
   2 ?   13.6   0.0   2.4e-06     0.043      15      51 ..     185     222 ..     179     225 .. 0.90

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 0.33
   LBR_tudor 22 yyevkvlsfdekkqlYtVkykDG 44
                +y   + ++++ +    V y+DG
  KOO24971.1 45 WYGGVIRDWSAIDDHHLVTYDDG 67
                55555666666677788999999 PP

  == domain 2  score: 13.6 bits;  conditional E-value: 2.4e-06
   LBR_tudor  15 RWPGSsLyyevkvlsfdekkqlYtVky.kDGTelelke 51 
                  WP    +y  +vl+fd+++   tV y  DG e+ l +
  KOO24971.1 185 HWPLDDEWYVAQVLRFDAETVRHTVEYiADGLEEHLTL 222
                 6999999********************77****99976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (982 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1085  (0.0605165); expected 358.6 (0.02)
Passed bias filter:                      342  (0.0190752); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.78u 0.29s 00:00:01.07 Elapsed: 00:00:00.46
# Mc/sec: 6380.76
//
Query:       KOO24972.1  [L=903]
Description: hypothetical protein Ctob_006101 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.6e-16   60.1   0.0    3.6e-16   59.0   0.0    1.6  2  Bromodomain      Bromodomain
    0.00061   19.7   0.0     0.0012   18.8   0.0    1.4  1  Acetyltransf_10  Acetyltransferase (GNAT) domain
     0.0096   16.0   0.0        1.5    8.9   0.0    2.4  2  LysM             LysM domain
  ------ inclusion threshold ------
      0.087   13.3   0.1       0.29   11.6   0.0    1.9  2  Acetyltransf_7   Acetyltransferase (GNAT) domain


Domain annotation for each model (and alignments):
>> Bromodomain  Bromodomain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.0   0.0       3.6   1.6e+04      34      47 ..      67      80 ..      66      81 .. 0.86
   2 !   59.0   0.0     8e-20   3.6e-16       4      82 ..     747     827 ..     744     829 .. 0.95

  Alignments for each domain:
  == domain 1  score: -4.0 bits;  conditional E-value: 3.6
                 SS---HHHHHHHHH CS
  Bromodomain 34 kkPldLstIkkkle 47
                 +kPl+L+ + ++l+
   KOO24972.1 67 SKPLSLEYMADRLD 80
                 68*****9999985 PP

  == domain 2  score: 59.0 bits;  conditional E-value: 8e-20
                  HHHHBHTTTCGGGGCSTT..-GCCSTTHHHH.SS---HHHHHHHHHTT--SSHHHHHHHHHHHHHHHHHHSHTTSHHHHHH CS
  Bromodomain   4 ilsellehklaepFlepv..dpeefpdyyavikkPldLstIkkklesnkYksladfeadlkllfsNarkyngegsviyela 82 
                  +l+ l +hk+a+pFlepv  ++  + dy++v+++P+dL+ ++++le++ Y  + +  ad++l++sN + yn  ++ +y++a
   KOO24972.1 747 VLKLLRKHKEADPFLEPVdwQGLGLDDYPEVVTHPMDLNAVQARLERGGYADVLEAAADVELIWSNTMLYNSADNWVYAAA 827
                  677799********************************************************************9999988 PP

>> Acetyltransf_10  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.8   0.0   2.7e-07    0.0012      67     124 ..     184     242 ..     182     244 .. 0.86

  Alignments for each domain:
  == domain 1  score: 18.8 bits;  conditional E-value: 2.7e-07
  Acetyltransf_10  67 GigkaLleaveeeaekdgikl.eltvnaspyavpfYeklGFkavgeeqeenGirfvpMe 124
                      G gk Lle ++e +e +++    +  +a++  ++fYe++GF++vg+++ ++     pMe
       KOO24972.1 184 GCGKWLLELMLEGFESADSPYaFVVTQATDGSISFYERMGFVRVGAVTARKRADAAPME 242
                      89999******9997777666556666666*********************99999997 PP

>> LysM  LysM domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.9   0.0   0.00034       1.5       6      42 ..     280     315 ..     278     323 .. 0.80
   2 !    4.7   0.0    0.0071        32      11      43 ..     353     390 ..     351     391 .. 0.84

  Alignments for each domain:
  == domain 1  score: 8.9 bits;  conditional E-value: 0.00034
                 T--HHHHHHHCTCHHHHHHHHCTCSSCGG--TTEEEE CS
        LysM   6 GDTLwsIAkrygitveklleaNnlsspdkifpGqkLk 42 
                  +T+++IA+++g++v  l+  N+ + p+ + p ++Lk
  KOO24972.1 280 DETVEGIAAQHGVSVHGLIFFNKGRYPK-LAPDSVLK 315
                 69********************666666.66666664 PP

  == domain 2  score: 4.7 bits;  conditional E-value: 0.0071
                 HHHHHCTCHHHHHHHHC.....TCSSCGG--TTEEEEE CS
        LysM  11 sIAkrygitveklleaN.....nlsspdkifpGqkLki 43 
                 +IA   +i  ++ll++N     +l  +  + +G+k +i
  KOO24972.1 353 RIAETLNIEPRDLLRMNqerikGLHISSELIAGTKVQI 390
                 79999**************8885555558999999888 PP

>> Acetyltransf_7  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   6.4e-05      0.29      40      76 .]     184     226 ..     182     226 .. 0.59
   2 ?   -2.6   0.0       1.8     8e+03       5      19 ..     611     625 ..     608     637 .. 0.68

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 6.4e-05
                     SHHHHHHHHTTSEEE......EEEEEETHHHHHHHHHHTTEEE CS
  Acetyltransf_7  40 GiGraLleaaekgii......leqlelnaekaikfYeklGFee 76 
                     G G+ Lle+  +g++       ++++ +++ +i+fYe++GF++
      KOO24972.1 184 GCGKWLLELMLEGFEsadspyAFVVTQATDGSISFYERMGFVR 226
                     88999999723453333333212112222388*********85 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 1.8
                     EEEEEETTEEEEEEE CS
  Acetyltransf_7   5 vfVaeddgkivGfia 19 
                     ++Vaed+g+++   a
      KOO24972.1 611 MLVAEDEGGEIDVGA 625
                     689***988884333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (903 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       630  (0.0351386); expected 358.6 (0.02)
Passed bias filter:                      323  (0.0180155); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.67u 0.26s 00:00:00.93 Elapsed: 00:00:00.43
# Mc/sec: 6273.78
//
Query:       KOO24973.1  [L=374]
Description: serine threonine-protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    8.1e-36  118.9  19.3    2.2e-06   26.8   0.2    6.4  6  EF-hand_1     EF hand
    2.6e-33  111.1  15.4    0.00012   21.7   0.2    6.4  6  EF-hand_6     EF-hand domain
    1.8e-32  111.6  11.7    1.7e-10   41.2   0.4    3.6  3  EF-hand_7     EF-hand domain pair
    1.6e-29  100.0  23.5    9.2e-07   28.1   0.3    6.5  6  EF-hand_5     EF hand
    4.9e-25   87.1  17.0    1.5e-09   37.6   1.4    5.9  6  EF-hand_8     EF-hand domain pair
    1.9e-06   28.1   1.0        3.8    7.9   0.0    5.1  5  SPARC_Ca_bdg  Secreted protein acidic and rich in cysteine Ca
    0.00094   19.2   0.4        8.9    6.2   0.2    4.9  6  Caleosin      Caleosin related protein
     0.0018   18.1   4.6        1.3    9.0   0.1    4.6  5  EF-hand_10    EF hand
     0.0052   17.0   0.4      0.085   13.0   0.1    2.9  3  p25-alpha     p25-alpha
  ------ inclusion threshold ------
      0.016   15.5   1.2         13    6.2   0.0    3.9  4  DUF1456       Protein of unknown function (DUF1456)
       0.11   12.3   0.1         11    5.8   0.0    3.1  3  EspA          EspA-like secreted protein
       0.12   12.7   0.0         43    4.5   0.0    3.2  3  GCR1_C        Transcriptional activator of glycolytic enzymes
          6    6.9   5.9         39    4.3   0.8    3.5  3  EF-hand_4     Cytoskeletal-regulatory complex EF hand


Domain annotation for each model (and alignments):
>> EF-hand_1  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.3   0.1   4.4e-08     6e-05       5      28 ..      23      46 ..      20      47 .. 0.88
   2 !   26.8   0.2   1.6e-09   2.2e-06       1      23 [.      55      77 ..      55      80 .. 0.93
   3 !   19.6   0.5   3.1e-07   0.00043       2      27 ..     166     191 ..     165     193 .. 0.90
   4 !   20.7   0.1   1.4e-07    0.0002       4      28 ..     204     228 ..     201     229 .. 0.90
   5 !   20.0   0.0   2.5e-07   0.00034       5      26 ..     287     308 ..     283     310 .. 0.91
   6 !   19.3   0.4     4e-07   0.00055       2      21 ..     320     339 ..     319     339 .. 0.95

  Alignments for each domain:
  == domain 1  score: 22.3 bits;  conditional E-value: 4.4e-08
                HHHHHTTTSSSEEEHHHHHHHHHH CS
   EF-hand_1  5 iFrefDkDgdGkIdfeEfkellkk 28
                + +e D+DgdG I+ +Ef+++++ 
  KOO24973.1 23 LLAEWDVDGDGVINVDEFRKAVRQ 46
                56799***************9985 PP

  == domain 2  score: 26.8 bits;  conditional E-value: 1.6e-09
                HHHHHHHHHTTTSSSEEEHHHHH CS
   EF-hand_1  1 elkeiFrefDkDgdGkIdfeEfk 23
                e++ +Fr+fD+DgdG++++eE+ 
  KOO24973.1 55 EIDAVFRDFDTDGDGTLSLEELS 77
                79*******************95 PP

  == domain 3  score: 19.6 bits;  conditional E-value: 3.1e-07
                 HHHHHHHHTTTSSSEEEHHHHHHHHH CS
   EF-hand_1   2 lkeiFrefDkDgdGkIdfeEfkellk 27 
                 + ++Fr++D+DgdG + ++E+k +l 
  KOO24973.1 166 VMDLFRIMDQDGDGLLQKKELKVFLD 191
                 5789******************9985 PP

  == domain 4  score: 20.7 bits;  conditional E-value: 1.4e-07
                 HHHHHHTTTSSSEEEHHHHHHHHHH CS
   EF-hand_1   4 eiFrefDkDgdGkIdfeEfkellkk 28 
                  iF+++DkDg G+Idf+E+ +++++
  KOO24973.1 204 YIFAKLDKDGGGTIDFKELNRAFQR 228
                 69*****************999875 PP

  == domain 5  score: 20.0 bits;  conditional E-value: 2.5e-07
                 HHHHHTTTSSSEEEHHHHHHHH CS
   EF-hand_1   5 iFrefDkDgdGkIdfeEfkell 26 
                 +F efD Dg+Gk++  E++e+l
  KOO24973.1 287 LFHEFDADGSGKLSHREMREAL 308
                 7******************997 PP

  == domain 6  score: 19.3 bits;  conditional E-value: 4e-07
                 HHHHHHHHTTTSSSEEEHHH CS
   EF-hand_1   2 lkeiFrefDkDgdGkIdfeE 21 
                 ++e+F+++DkDg+G I+++E
  KOO24973.1 320 IDELFSKIDKDGSGEISIKE 339
                 89***************998 PP

>> EF-hand_6  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.5   0.1   9.7e-07    0.0013       7      28 ..      25      46 ..      20      52 .. 0.87
   2 !   21.7   0.2   8.9e-08   0.00012       1      25 [.      55      79 ..      55      84 .. 0.88
   3 !   21.3   0.5   1.2e-07   0.00017       2      31 .]     166     194 ..     165     194 .. 0.91
   4 !   20.8   0.0   1.7e-07   0.00024       4      27 ..     204     227 ..     201     236 .. 0.91
   5 !   18.2   0.0   1.2e-06    0.0017       5      27 ..     287     309 ..     283     312 .. 0.90
   6 !   16.6   0.1   3.8e-06    0.0052       2      21 ..     320     339 ..     319     339 .. 0.93

  Alignments for each domain:
  == domain 1  score: 18.5 bits;  conditional E-value: 9.7e-07
   EF-hand_6  7 klfDkdgdGkidaeElrkalrk 28
                 ++D+dgdG i+ +E+rka r+
  KOO24973.1 25 AEWDVDGDGVINVDEFRKAVRQ 46
                679****************995 PP

  == domain 2  score: 21.7 bits;  conditional E-value: 8.9e-08
   EF-hand_6  1 elreaFklfDkdgdGkidaeElrka 25
                e++++F+ fD+dgdG+++ eEl   
  KOO24973.1 55 EIDAVFRDFDTDGDGTLSLEELSTQ 79
                6889*****************9665 PP

  == domain 3  score: 21.3 bits;  conditional E-value: 1.2e-07
   EF-hand_6   2 lreaFklfDkdgdGkidaeElrkalrkalg 31 
                 ++++F+++D+dgdG + ++El+ +l  alg
  KOO24973.1 166 VMDLFRIMDQDGDGLLQKKELKVFLD-ALG 194
                 679*******************9998.776 PP

  == domain 4  score: 20.8 bits;  conditional E-value: 1.7e-07
   EF-hand_6   4 eaFklfDkdgdGkidaeElrkalr 27 
                 ++F ++Dkdg G+id++El +a++
  KOO24973.1 204 YIFAKLDKDGGGTIDFKELNRAFQ 227
                 79******************9987 PP

  == domain 5  score: 18.2 bits;  conditional E-value: 1.2e-06
   EF-hand_6   5 aFklfDkdgdGkidaeElrkalr 27 
                 +F++fD dg+Gk++  E+r al 
  KOO24973.1 287 LFHEFDADGSGKLSHREMREALG 309
                 8*******************997 PP

  == domain 6  score: 16.6 bits;  conditional E-value: 3.8e-06
   EF-hand_6   2 lreaFklfDkdgdGkidaeE 21 
                 ++e+F ++Dkdg+G+i+++E
  KOO24973.1 320 IDELFSKIDKDGSGEISIKE 339
                 789**************998 PP

>> EF-hand_7  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.1   1.9   1.4e-13   1.9e-10      10      66 ..      26      76 ..      20      79 .. 0.88
   2 !   41.2   0.4   1.3e-13   1.7e-10       3      71 .]     165     227 ..     163     227 .. 0.94
   3 !   34.3   0.1   1.7e-11   2.4e-08       3      65 ..     283     339 ..     282     341 .. 0.94

  Alignments for each domain:
  == domain 1  score: 41.1 bits;  conditional E-value: 1.4e-13
   EF-hand_7 10 elDtdgdgyldkeellrllrkifqgagegsklsdeelellfkefDtdkdGvisfdEF 66
                e D+dgdg ++++e+++++r++      g++   +e++++f++fDtd+dG++s++E+
  KOO24973.1 26 EWDVDGDGVINVDEFRKAVRQF------GFEAKNDEIDAVFRDFDTDGDGTLSLEEL 76
                66******************66......55555689********************7 PP

  == domain 2  score: 41.2 bits;  conditional E-value: 1.3e-13
   EF-hand_7   3 klkeaFkelDtdgdgyldkeellrllrkifqgagegsklsdeelellfkefDtdkdGvisfdEFlklyr 71 
                 ++++ F+ +D+dgdg l k el+ +l         g++++++ + ++f ++D+d+ G+i+f E+ ++++
  KOO24973.1 165 RVMDLFRIMDQDGDGLLQKKELKVFLD------ALGFEMTPKDVGYIFAKLDKDGGGTIDFKELNRAFQ 227
                 6899*******************7777......9*****************************999875 PP

  == domain 3  score: 34.3 bits;  conditional E-value: 1.7e-11
   EF-hand_7   3 klkeaFkelDtdgdgyldkeellrllrkifqgagegsklsdeelellfkefDtdkdGvisfdE 65 
                 k+ + F e+D dg+g+l+ +e++++l        eg  +s+  +++lf ++D+d++G+is  E
  KOO24973.1 283 KVTTLFHEFDADGSGKLSHREMREALG------LEGIGISRRTIDELFSKIDKDGSGEISIKE 339
                 66789******************9999......99*************************887 PP

>> EF-hand_5  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.1   5.6e-06    0.0077       9      23 ..      28      42 ..      21      44 .. 0.89
   2 !   28.1   0.3   6.7e-10   9.2e-07       1      23 [.      56      78 ..      56      80 .. 0.92
   3 !   18.2   0.5   9.2e-07    0.0013       3      24 ..     168     189 ..     166     190 .. 0.92
   4 !   12.8   0.5   4.6e-05     0.063       5      23 ..     206     224 ..     205     226 .. 0.91
   5 !   18.6   0.0   6.8e-07   0.00094       4      23 ..     287     306 ..     284     308 .. 0.90
   6 !   19.3   0.8   4.1e-07   0.00056       1      20 [.     320     339 ..     320     339 .. 0.92

  Alignments for each domain:
  == domain 1  score: 15.7 bits;  conditional E-value: 5.6e-06
                -SS-SSCE-HHHHHH CS
   EF-hand_5  9 DlNgDGkIskeELkt 23
                D++gDG I+++E+++
  KOO24973.1 28 DVDGDGVINVDEFRK 42
                9************97 PP

  == domain 2  score: 28.1 bits;  conditional E-value: 6.7e-10
                HHHHHHHH-SS-SSCE-HHHHHH CS
   EF-hand_5  1 lkdtFqaiDlNgDGkIskeELkt 23
                ++++F+ +D++gDG++s eEL t
  KOO24973.1 56 IDAVFRDFDTDGDGTLSLEELST 78
                678******************86 PP

  == domain 3  score: 18.2 bits;  conditional E-value: 9.2e-07
                 HHHHHH-SS-SSCE-HHHHHHH CS
   EF-hand_5   3 dtFqaiDlNgDGkIskeELktl 24 
                 d+F+ +D +gDG + k ELk +
  KOO24973.1 168 DLFRIMDQDGDGLLQKKELKVF 189
                 89*****************987 PP

  == domain 4  score: 12.8 bits;  conditional E-value: 4.6e-05
                 HHHH-SS-SSCE-HHHHHH CS
   EF-hand_5   5 FqaiDlNgDGkIskeELkt 23 
                 F ++D++g G+I++ EL +
  KOO24973.1 206 FAKLDKDGGGTIDFKELNR 224
                 99***************76 PP

  == domain 5  score: 18.6 bits;  conditional E-value: 6.8e-07
                 HHHHH-SS-SSCE-HHHHHH CS
   EF-hand_5   4 tFqaiDlNgDGkIskeELkt 23 
                 +F ++D++g+Gk+s+ E ++
  KOO24973.1 287 LFHEFDADGSGKLSHREMRE 306
                 79***************987 PP

  == domain 6  score: 19.3 bits;  conditional E-value: 4.1e-07
                 HHHHHHHH-SS-SSCE-HHH CS
   EF-hand_5   1 lkdtFqaiDlNgDGkIskeE 20 
                 ++++F++iD++g+G Is+ E
  KOO24973.1 320 IDELFSKIDKDGSGEISIKE 339
                 5779*************998 PP

>> EF-hand_8  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.4   0.0   0.00016      0.22      29      51 ..      21      43 ..      20      46 .. 0.85
   2 !   37.6   1.4   1.1e-12   1.5e-09       2      48 ..      32      76 ..      31      80 .. 0.94
   3 !   15.6   0.4   7.6e-06     0.011      28      52 ..     166     190 ..     154     192 .. 0.88
   4 !   16.2   0.1     5e-06    0.0069       8      51 ..     184     225 ..     183     229 .. 0.89
   5 !   13.0   0.0   5.1e-05      0.07      26      44 ..     282     300 ..     272     303 .. 0.90
   6 !   16.7   0.1   3.5e-06    0.0048       9      47 ..     303     339 ..     299     341 .. 0.90

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00016
   EF-hand_8 29 dilfrefDtdgdGkisfeEFcvl 51
                ++l+ e D dgdG+i+ +EF   
  KOO24973.1 21 TDLLAEWDVDGDGVINVDEFRKA 43
                6788899*************876 PP

  == domain 2  score: 37.6 bits;  conditional E-value: 1.1e-12
   EF-hand_8  2 kgkItreelrrilrilglkkglseeevdilfrefDtdgdGkisfeEF 48
                +g+I ++e+r+++r +g +    ++e+d++fr fDtdgdG++s+eE 
  KOO24973.1 32 DGVINVDEFRKAVRQFGFE--AKNDEIDAVFRDFDTDGDGTLSLEEL 76
                8************999*9*..*************************7 PP

  == domain 3  score: 15.6 bits;  conditional E-value: 7.6e-06
   EF-hand_8  28 vdilfrefDtdgdGkisfeEFcvll 52 
                 v +lfr +D+dgdG + ++E  v+l
  KOO24973.1 166 VMDLFRIMDQDGDGLLQKKELKVFL 190
                 5589*****************9987 PP

  == domain 4  score: 16.2 bits;  conditional E-value: 5e-06
   EF-hand_8   8 eelrrilrilglkkglseeevdilfrefDtdgdGkisfeEFcvl 51 
                  el+ +l +lg +  +++++v  +f ++D dg G+i+f+E    
  KOO24973.1 184 KELKVFLDALGFE--MTPKDVGYIFAKLDKDGGGTIDFKELNRA 225
                 6899999889***..*************************7555 PP

  == domain 5  score: 13.0 bits;  conditional E-value: 5.1e-05
   EF-hand_8  26 eevdilfrefDtdgdGkis 44 
                 ++v++lf efD dg+Gk+s
  KOO24973.1 282 SKVTTLFHEFDADGSGKLS 300
                 6899*************98 PP

  == domain 6  score: 16.7 bits;  conditional E-value: 3.5e-06
   EF-hand_8   9 elrrilrilglkk.glseeevdilfrefDtdgdGkisfeE 47 
                 e+r++l   gl++ g+s   +d+lf+++D dg+G is +E
  KOO24973.1 303 EMREAL---GLEGiGISRRTIDELFSKIDKDGSGEISIKE 339
                 677766...***************************9776 PP

>> SPARC_Ca_bdg  Secreted protein acidic and rich in cysteine Ca binding region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.0   0.0      0.38   5.3e+02      83     111 ..      13      41 ..       7      43 .. 0.75
   2 ?    3.8   0.0     0.051        70      53      77 ..      53      77 ..      41      82 .. 0.82
   3 ?    4.3   0.2     0.034        47      55      78 ..     165     188 ..      87     194 .. 0.78
   4 ?    4.1   0.0     0.041        56      51      78 ..     197     224 ..     191     229 .. 0.88
   5 !    7.9   0.0    0.0028       3.8      54     109 ..     282     339 ..     235     342 .. 0.81

  Alignments for each domain:
  == domain 1  score: 1.0 bits;  conditional E-value: 0.38
  SPARC_Ca_bdg  83 lvklehCikpflescDadkdkkislkEwc 111
                   l +    ++ +l + D+d d+ i+  E+ 
    KOO24973.1  13 LSRCTALVTDLLAEWDVDGDGVINVDEFR 41 
                   44445556789999999999999999986 PP

  == domain 2  score: 3.8 bits;  conditional E-value: 0.051
  SPARC_Ca_bdg 53 kepvawkFsklDtnsdkvlsksELa 77
                  ++++   F ++Dt+ d++ls +EL+
    KOO24973.1 53 NDEIDAVFRDFDTDGDGTLSLEELS 77
                  5667778999999999999999996 PP

  == domain 3  score: 4.3 bits;  conditional E-value: 0.034
  SPARC_Ca_bdg  55 pvawkFsklDtnsdkvlsksELap 78 
                    v   F  +D++ d++l+k+EL+ 
    KOO24973.1 165 RVMDLFRIMDQDGDGLLQKKELKV 188
                   55556999*************975 PP

  == domain 4  score: 4.1 bits;  conditional E-value: 0.041
  SPARC_Ca_bdg  51 eckepvawkFsklDtnsdkvlsksELap 78 
                   ++ + v++ F klD++  ++++ +EL+ 
    KOO24973.1 197 MTPKDVGYIFAKLDKDGGGTIDFKELNR 224
                   5667899******************985 PP

  == domain 5  score: 7.9 bits;  conditional E-value: 0.0028
  SPARC_Ca_bdg  54 epvawkFsklDtnsdkvlsksELaplr.a.plvklehCikpflescDadkdkkislkE 109
                   ++v+  F+++D +  + ls++E+++   +  +    + i++++++ D d  ++is kE
    KOO24973.1 282 SKVTTLFHEFDADGSGKLSHREMREALgLeGIGISRRTIDELFSKIDKDGSGEISIKE 339
                   456667*****************874312136677899*****************999 PP

>> Caleosin  Caleosin related protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.2   0.2    0.0064       8.9      13      37 ..      27      51 ..      20      60 .. 0.92
   2 ?    2.9   0.0     0.068        93      13      37 ..      63      89 ..      51     101 .. 0.63
   3 ?   -0.9   0.0         1   1.4e+03      14      37 ..     174     197 ..     168     206 .. 0.76
   4 ?    0.8   0.0      0.29     4e+02      91     120 ..     198     227 ..     191     232 .. 0.85
   5 ?   -0.8   0.0      0.89   1.2e+03      94     118 ..     283     307 ..     270     313 .. 0.87
   6 ?    1.0   0.0      0.25   3.4e+02      94     117 ..     319     342 ..     314     358 .. 0.85

  Alignments for each domain:
  == domain 1  score: 6.2 bits;  conditional E-value: 0.0064
    Caleosin 13 fDrdkdGiiypldtyrgfralgfnv 37
                +D d dG+i   +  +++r++gf++
  KOO24973.1 27 WDVDGDGVINVDEFRKAVRQFGFEA 51
                **********************985 PP

  == domain 2  score: 2.9 bits;  conditional E-value: 0.068
    Caleosin 13 fDrdkdGiiypld..tyrgfralgfnv 37
                fD+d dG++ + +  t  g+r+l f+v
  KOO24973.1 63 FDTDGDGTLSLEElsTQLGLRNLPFGV 89
                677777766665422555666666665 PP

  == domain 3  score: -0.9 bits;  conditional E-value: 1
    Caleosin  14 DrdkdGiiypldtyrgfralgfnv 37 
                 D+d dG++   +    + algf++
  KOO24973.1 174 DQDGDGLLQKKELKVFLDALGFEM 197
                 778888887777777777777776 PP

  == domain 4  score: 0.8 bits;  conditional E-value: 0.29
    Caleosin  91 vpqkfeeifskyakekkdaltlkevlellk 120
                 +p+    if+k +k+  +++ +ke+++ ++
  KOO24973.1 198 TPKDVGYIFAKLDKDGGGTIDFKELNRAFQ 227
                 67778899****************998876 PP

  == domain 5  score: -0.8 bits;  conditional E-value: 0.89
    Caleosin  94 kfeeifskyakekkdaltlkevlel 118
                 k   +f++++++ +++l+ +e+ e 
  KOO24973.1 283 KVTTLFHEFDADGSGKLSHREMREA 307
                 5668999999999999999999876 PP

  == domain 6  score: 1.0 bits;  conditional E-value: 0.25
    Caleosin  94 kfeeifskyakekkdaltlkevle 117
                   +e+fsk +k+ ++++++ke l+
  KOO24973.1 319 TIDELFSKIDKDGSGEISIKESLS 342
                 6799*************9999765 PP

>> EF-hand_10  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.0   0.1      0.14   1.9e+02      24      44 ..      57      77 ..      35      80 .. 0.75
   2 !    9.0   0.1   0.00091       1.3      25      50 .]     168     193 ..     166     193 .. 0.93
   3 !    6.6   0.1     0.005       6.9       5      44 ..     184     223 ..     181     228 .. 0.91
   4 ?    4.3   0.0     0.026        36      25      45 ..     286     306 ..     284     310 .. 0.91
   5 ?   -1.3   0.0       1.5     2e+03      25      38 ..     322     335 ..     315     339 .. 0.84

  Alignments for each domain:
  == domain 1  score: 2.0 bits;  conditional E-value: 0.14
  EF-hand_10 24 ekLFkkcDkSksgrLegeEie 44
                  +F+  D+  +g+L  eE+ 
  KOO24973.1 57 DAVFRDFDTDGDGTLSLEELS 77
                678************999975 PP

  == domain 2  score: 9.0 bits;  conditional E-value: 0.00091
  EF-hand_10  25 kLFkkcDkSksgrLegeEieeFyklL 50 
                  LF+  D+  +g L+ +E++ F++ L
  KOO24973.1 168 DLFRIMDQDGDGLLQKKELKVFLDAL 193
                 69********************9976 PP

  == domain 3  score: 6.6 bits;  conditional E-value: 0.005
  EF-hand_10   5 kEvkrlLreiNievddeYAekLFkkcDkSksgrLegeEie 44 
                 kE+k +L  +  e+  +    +F k Dk   g+++ +E++
  KOO24973.1 184 KELKVFLDALGFEMTPKDVGYIFAKLDKDGGGTIDFKELN 223
                 9*********************************999986 PP

  == domain 4  score: 4.3 bits;  conditional E-value: 0.026
  EF-hand_10  25 kLFkkcDkSksgrLegeEiee 45 
                 +LF + D   sg+L + E+ e
  KOO24973.1 286 TLFHEFDADGSGKLSHREMRE 306
                 79****************975 PP

  == domain 5  score: -1.3 bits;  conditional E-value: 1.5
  EF-hand_10  25 kLFkkcDkSksgrL 38 
                 +LF k Dk  sg +
  KOO24973.1 322 ELFSKIDKDGSGEI 335
                 79******999875 PP

>> p25-alpha  p25-alpha
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.0       1.1   1.6e+03      24      62 ..      39      74 ..      30      83 .. 0.51
   2 !   13.0   0.1   6.2e-05     0.085      37      85 ..     195     243 ..     182     309 .. 0.72
   3 ?   -0.2   0.0      0.72   9.9e+02      40      63 ..     316     339 ..     285     344 .. 0.82

  Alignments for each domain:
  == domain 1  score: -0.8 bits;  conditional E-value: 1.1
   p25-alpha 24 nfsKlckDckiidkkvtstdvDiiFsKvkaksarkitfe 62
                +f K +++ +    + ++ ++D +F+ + + ++ ++++e
  KOO24973.1 39 EFRKAVRQFGF---EAKNDEIDAVFRDFDTDGDGTLSLE 74
                33333333333...2333555555555555555555555 PP

  == domain 2  score: 13.0 bits;  conditional E-value: 6.2e-05
   p25-alpha  37 kkvtstdvDiiFsKvkaksarkitfeqfkealeelaekkfkkkkkeeel 85 
                  ++t +dv+ iF+K  + +  +i+f++ ++a +   +    +k++++++
  KOO24973.1 195 FEMTPKDVGYIFAKLDKDGGGTIDFKELNRAFQRAPTVPGMEKEEKDKK 243
                 579****************************999888733333333333 PP

  == domain 3  score: -0.2 bits;  conditional E-value: 0.72
   p25-alpha  40 tstdvDiiFsKvkaksarkitfeq 63 
                   + +D +FsK+ + ++ +i++++
  KOO24973.1 316 SRRTIDELFSKIDKDGSGEISIKE 339
                 556788999999999998888776 PP

>> DUF1456  Protein of unknown function (DUF1456)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.0   0.0       0.2   2.7e+02      18      45 ..      39      66 ..      35      80 .. 0.77
   2 ?    0.7   0.1      0.49   6.7e+02      31      62 ..     162     193 ..     138     197 .. 0.71
   3 ?    2.9   0.1       0.1   1.4e+02      17      46 ..     184     213 ..     180     260 .. 0.78
   4 ?    6.2   0.0    0.0092        13      14      48 ..     299     333 ..     298     343 .. 0.87

  Alignments for each domain:
  == domain 1  score: 2.0 bits;  conditional E-value: 0.2
     DUF1456 18 dmveifklggvevtkeelsalLkkedee 45
                +  + +++ g+e +++e++a+++  d +
  KOO24973.1 39 EFRKAVRQFGFEAKNDEIDAVFRDFDTD 66
                566778899*************985554 PP

  == domain 2  score: 0.7 bits;  conditional E-value: 0.49
     DUF1456  31 tkeelsalLkkedeegyeeckdqvLesFLnGl 62 
                 t + + +l++  d++g   ++++ L+ FL+ l
  KOO24973.1 162 TVSRVMDLFRIMDQDGDGLLQKKELKVFLDAL 193
                 34567777888888888888999999999877 PP

  == domain 3  score: 2.9 bits;  conditional E-value: 0.1
     DUF1456  17 edmveifklggvevtkeelsalLkkedeeg 46 
                 +++  ++ + g+e+t++++  ++ k d++g
  KOO24973.1 184 KELKVFLDALGFEMTPKDVGYIFAKLDKDG 213
                 566667788899999999999999966653 PP

  == domain 4  score: 6.2 bits;  conditional E-value: 0.0092
     DUF1456  14 lkdedmveifklggvevtkeelsalLkkedeegye 48 
                 l+  +m e + l g+ +++ ++++l+ k d++g  
  KOO24973.1 299 LSHREMREALGLEGIGISRRTIDELFSKIDKDGSG 333
                 78899***********************8887655 PP

>> EspA  EspA-like secreted protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.6   0.0      0.16   2.2e+02      98     131 ..      44      77 ..      34     126 .. 0.89
   2 ?    0.9   0.0      0.26   3.6e+02     110     137 ..     166     193 ..     131     219 .. 0.86
   3 ?    5.8   0.0    0.0081        11     100     126 ..     310     336 ..     274     346 .. 0.82

  Alignments for each domain:
  == domain 1  score: 1.6 bits;  conditional E-value: 0.16
        EspA  98 lrengIlvenktiddylkkngqvGegkldkgdLt 131
                 +r+ g   +n++id  +++   +G+g l+  +L+
  KOO24973.1  44 VRQFGFEAKNDEIDAVFRDFDTDGDGTLSLEELS 77 
                 5777888899****************99988875 PP

  == domain 2  score: 0.9 bits;  conditional E-value: 0.26
        EspA 110 iddylkkngqvGegkldkgdLtavkasL 137
                 + d+++ + q+G+g l+k +L++   +L
  KOO24973.1 166 VMDLFRIMDQDGDGLLQKKELKVFLDAL 193
                 5566777888999999999998765555 PP

  == domain 3  score: 5.8 bits;  conditional E-value: 0.0081
        EspA 100 engIlvenktiddylkkngqvGegkld 126
                  +gI ++ +tid++++k+ ++G g+++
  KOO24973.1 310 LEGIGISRRTIDELFSKIDKDGSGEIS 336
                 579*******************99764 PP

>> GCR1_C  Transcriptional activator of glycolytic enzymes
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.5   0.0     0.031        43       3      32 ..      13      42 ..      12      46 .. 0.86
   2 ?    3.8   0.0     0.054        75       2      34 ..      48      80 ..      47      84 .. 0.89
   3 ?   -0.4   0.0       1.1   1.4e+03       5      32 ..     279     306 ..     276     310 .. 0.83

  Alignments for each domain:
  == domain 1  score: 4.5 bits;  conditional E-value: 0.031
      GCR1_C  3 lsreiktVedlwnEykeglngkpsikslek 32
                lsr    V+dl+ E+ ++ +g  ++ ++ k
  KOO24973.1 13 LSRCTALVTDLLAEWDVDGDGVINVDEFRK 42
                6788888*************9999988766 PP

  == domain 2  score: 3.8 bits;  conditional E-value: 0.054
      GCR1_C  2 klsreiktVedlwnEykeglngkpsikslekky 34
                 ++ +++ +  + +++ ++ +g  s+++l ++ 
  KOO24973.1 48 GFEAKNDEIDAVFRDFDTDGDGTLSLEELSTQL 80
                5788999**********************9875 PP

  == domain 3  score: -0.4 bits;  conditional E-value: 1.1
      GCR1_C   5 reiktVedlwnEykeglngkpsikslek 32 
                  + ++V+ l +E+  +  gk s +++ +
  KOO24973.1 279 ANWSKVTTLFHEFDADGSGKLSHREMRE 306
                 567899**********999999888765 PP

>> EF-hand_4  Cytoskeletal-regulatory complex EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.3   0.8     0.028        39      53      83 ..      28      59 ..      15      63 .. 0.80
   2 ?    3.4   0.1     0.054        74      41      67 ..      52      78 ..      48      85 .. 0.86
   3 ?    0.8   0.2      0.34   4.7e+02      43      64 ..     200     221 ..     159     227 .. 0.51

  Alignments for each domain:
  == domain 1  score: 4.3 bits;  conditional E-value: 0.028
   EF-hand_4 53 didedgkldfeefciamr.lifdlvngeikdv 83
                d+d dg ++ +ef  a+r + f+  n+ei++v
  KOO24973.1 28 DVDGDGVINVDEFRKAVRqFGFEAKNDEIDAV 59
                9************9988734588888877766 PP

  == domain 2  score: 3.4 bits;  conditional E-value: 0.054
   EF-hand_4 41 eedklekiwdladidedgkldfeefci 67
                ++d+++ ++   d d dg+l +ee+  
  KOO24973.1 52 KNDEIDAVFRDFDTDGDGTLSLEELST 78
                678999999999************875 PP

  == domain 3  score: 0.8 bits;  conditional E-value: 0.34
   EF-hand_4  43 dklekiwdladidedgkldfee 64 
                 + +  i+   d d  g++df+e
  KOO24973.1 200 KDVGYIFAKLDKDGGGTIDFKE 221
                 3344444445555556677766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (374 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       515  (0.0287244); expected 358.6 (0.02)
Passed bias filter:                      480  (0.0267723); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                        13  (0.000725082); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 0.54u 0.28s 00:00:00.82 Elapsed: 00:00:00.42
# Mc/sec: 2643.63
//
Query:       KOO24974.1  [L=172]
Description: ras family gtpase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.1e-47  161.8   0.0    1.2e-47  161.7   0.0    1.0  1  Arf           ADP-ribosylation factor family
    1.2e-09   38.3   0.0    1.5e-09   37.9   0.0    1.1  1  MMR_HSR1      50S ribosome-binding GTPase
    1.6e-09   37.5   0.0    1.8e-09   37.3   0.0    1.0  1  SRPRB         Signal recognition particle receptor beta subun
    3.7e-07   29.9   0.0    4.1e-07   29.7   0.0    1.1  1  Ras           Ras family
    7.3e-07   29.4   0.0    1.5e-06   28.4   0.0    1.5  1  Roc           Ras of Complex, Roc, domain of DAPkinase
    1.1e-06   28.2   0.0    1.4e-06   27.8   0.0    1.1  1  Gtr1_RagA     Gtr1/RagA G protein conserved region
    6.8e-05   22.2   0.0     0.0037   16.5   0.0    2.2  2  G-alpha       G-protein alpha subunit
     0.0002   21.4   0.0      0.012   15.7   0.0    2.2  2  Dynamin_N     Dynamin family
    0.00082   19.0   0.1      0.031   13.8   0.0    2.0  2  GTP_EFTU      Elongation factor Tu GTP binding domain
     0.0064   16.1   0.0       0.33   10.5   0.0    2.1  2  cobW          CobW/HypB/UreG, nucleotide-binding domain
  ------ inclusion threshold ------
      0.013   15.1   0.1      0.016   14.8   0.1    1.2  1  AAA_25        AAA domain
      0.061   13.9   0.0      0.083   13.4   0.0    1.2  1  AAA_18        AAA domain
      0.063   12.9   0.1       0.14   11.8   0.1    1.5  1  Thymopoietin  Thymopoietin protein
      0.069   12.7   0.2        2.3    7.7   0.2    2.2  1  FeoB_N        Ferrous iron transport protein B
      0.074   13.4   0.3       0.32   11.3   0.3    1.7  1  AAA_16        AAA ATPase domain
      0.099   12.5   0.0        5.9    6.8   0.0    2.1  2  RsgA_GTPase   RsgA GTPase
       0.14   11.9   0.3       0.59    9.9   0.0    2.1  3  AAA_29        P-loop containing region of AAA domain


Domain annotation for each model (and alignments):
>> Arf  ADP-ribosylation factor family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  161.7   0.0   1.1e-50   1.2e-47      13     175 .]       6     172 .]       1     172 [] 0.97

  Alignments for each domain:
  == domain 1  score: 161.7 bits;  conditional E-value: 1.1e-50
                 TEEEEEEEESTTSSHHHHHHHHHHSSCEECSSSSSEEEEEEEETTEEEEEEEE-SSGGGGGGGGGGCTTESEEEEEEETT-CTTHHHHHHHHHHHCTSG CS
         Arf  13 kelrilllGLDnaGKtTilkklkleelvttvPTigfnveeleiknlkftvwDvGGqeklRplWknYfektdavifvvDsadreRleeakeeLkalleee 111
                 k+ r+l++GLDnaGK+T+l+ l  +e+v t PT  + ++ +++ ++k++  D+GG+e +R++W +Y ++ d+++++vD+adreR++ea  eL++ll++ 
  KOO24974.1   6 KKGRLLVVGLDNAGKSTLLTVLLRNEVVPTAPTHQPVTDMIKVGHMKLRAVDMGGHEIARRMWVQYAQEADGIVYIVDAADRERFQEAALELHKLLASP 104
                 889***********************************************************************************************9 PP

                 CCT.TSEEEEEEE-TTSTTSS-HHHHHHHTTGGGSS...SSSSEEEEEEBTTTTBTHHHHHHHHHHHH CS
         Arf 112 elk.evallvlaNKqDlpealseeelrellgleelk...gkrkleiqkcsavkgeglkeglewlsesi 175
                 +l  ++a+lvlaNK Dlp+a+++eel  +lgl+e+    ++r++ +  cs+ +++g+ eg++wl+++i
  KOO24974.1 105 TLPaSAAVLVLANKVDLPHAAQQEELYYSLGLDEIAqsgSTRPVGLYLCSIFERRGYMEGFDWLAQHI 172
                 996499*****************************989899***********************9975 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.9   0.0   1.4e-12   1.5e-09       2     113 ..      10     117 ..       9     118 .. 0.70

  Alignments for each domain:
  == domain 1  score: 37.9 bits;  conditional E-value: 1.4e-12
                 EEEEESTTSSHHHHHHHHHTS.TEEESSST.TSSSSEEEEEEEETTEEEEEEECGGCSSHHHHHHHHHHHHHH.HHCTSEEEEEEETT.TTCSHHHHHH CS
    MMR_HSR1   2 vaivGrpNvGKStLinaltge.kaivsdkp.gtTrdinegrvklkgkeielvDtpGliegaseekglgkafla.leeadlillvvdas.eeklkpldee 96 
                  ++vG  N+GKStL+  l+++ ++ ++ ++  +T  i+ g++k     ++ vD+ G  e        ++ + +  +ead i+++vda+ +e +++   e
  KOO24974.1  10 LLVVGLDNAGKSTLLTVLLRNeVVPTAPTHqPVTDMIKVGHMK-----LRAVDMGG-HE------IARRMWVQyAQEADGIVYIVDAAdRERFQEAALE 96 
                 689****************985556655442677777777776.....899*****.55......3344444413469********8875578888888 PP

                 HHHHHHH....TTSEEEEEEE CS
    MMR_HSR1  97 leellee....akkplilvln 113
                 l++ll +    a   +++++n
  KOO24974.1  97 LHKLLASptlpASAAVLVLAN 117
                 888876555555555565665 PP

>> SRPRB  Signal recognition particle receptor beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.3   0.0   1.7e-12   1.8e-09       3     133 ..       7     130 ..       5     148 .. 0.83

  Alignments for each domain:
  == domain 1  score: 37.3 bits;  conditional E-value: 1.7e-12
                 --EEEEE-STTSSHHHHHHHHHHSS---B---SS-EEETTG...GGTT-SEEEETT-GCCSHHHHHHHHHHGGEEEEEEEEETTS-HHHHHHHHHHHHH CS
       SRPRB   3 kpavllvGlsdsGKTslftrLttdsvkktvtSqessaalkvksekgskltliDfPGheklrqklleklkaksslkglvfvvDStidpkevkevAEllye 101
                 k ++l+vGl ++GK +l+t L+ ++v +t    ++  ++ + +  + kl+ +D+ Ghe  r   +++    +++ g+v++vD+ +d  + +e A  l +
  KOO24974.1   7 KGRLLVVGLDNAGKSTLLTVLLRNEVVPTAPTHQPV-TDMI-KVGHMKLRAVDMGGHEIARRMWVQY---AQEADGIVYIVDA-ADRERFQEAALELHK 99 
                 56799************************9887764.4444.5688999*********999988887...8889********6.688889999988888 PP

                 HHHHHHHHTT---EEEEEE-TTSTT---HHHH CS
       SRPRB 102 illiteklkdavdiliACnKqelflakspkli 133
                 +l   + l+ +  +l+  nK +l  a +++ +
  KOO24974.1 100 LLASPT-LPASAAVLVLANKVDLPHAAQQEEL 130
                 887766.78888999999****9888776655 PP

>> Ras  Ras family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.7   0.0   3.9e-10   4.1e-07       2     118 ..      10     123 ..       9     171 .. 0.82

  Alignments for each domain:
  == domain 1  score: 29.7 bits;  conditional E-value: 3.9e-10
                 EEEEESTTSSHHHHHHHHHHSSCSSSCTTTSSEEEEEEEEEETTEEEEEEEEEETTSGGGHHHHHHHHTTESEEEEEEETTBHHHHHTHHHHHHHHHHH CS
         Ras   2 lvlvGdsavGKtslllrfvkdkFkeeyesTigvdfytkeievdgkevkleiwDTAGqeefkslrelyyrdaegillvyditsresfenvkkwveeikrv 100
                 l++vG  + GK++ll+   +++   +  +T     +  + +++  ++kl+  D  G e  +++  +y ++a+gi+ + d  +re f++++  ++++   
  KOO24974.1  10 LLVVGLDNAGKSTLLTVLLRNEVVPT-APTH----QPVTDMIKVGHMKLRAVDMGGHEIARRMWVQYAQEADGIVYIVDAADRERFQEAALELHKLLAS 103
                 89****************99986544.4454....445556777899*******************************************555555544 PP

                 ST..TTSEEEEEEETTTGGG CS
         Ras 101 ae..envpivLvGnKvDlee 118
                  +   + ++++++nKvDl +
  KOO24974.1 104 PTlpASAAVLVLANKVDLPH 123
                 444688999999******87 PP

>> Roc  Ras of Complex, Roc, domain of DAPkinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.4   0.0   1.4e-09   1.5e-06       1     119 [.       9     120 ..       9     121 .. 0.74

  Alignments for each domain:
  == domain 1  score: 28.4 bits;  conditional E-value: 1.4e-09
                 EEEEESSTTSSHHHHHHCHCT-CCC-EEETTTTEEEEEEECGGSGGCTTBTTTTCEEEEEEEE-SGGCTTTT-HHHHCTSCEEEEEEEGHHHHCHHHHH CS
         Roc   1 KvvlvGdsgvGKtsllkrfvedkfsekekstigvdfltkevtkikgvendkkvkkvklniWDtaGqerfrslhplylreaalailvydsrssenlkeWl 99 
                 ++++vG  ++GK++ll+ ++++++ ++  +   v+ +   +          kv ++kl+  D++G+e  r +   y +ea+ +++++d+ + e+++e  
  KOO24974.1   9 RLLVVGLDNAGKSTLLTVLLRNEVVPTAPTHQPVTDM---I----------KVGHMKLRAVDMGGHEIARRMWVQYAQEADGIVYIVDAADRERFQEAA 94 
                 5899********************9886555444322...2..........234688******************************977666666656 PP

                 HHHHHHCS......SS-EEEEEE-TT CS
         Roc 100 kelkkvag......kspvilvgnkiD 119
                  el+k         ++ v++++nk+D
  KOO24974.1  95 LELHKLLAsptlpaSAAVLVLANKVD 120
                 5655543211122245678889*999 PP

>> Gtr1_RagA  Gtr1/RagA G protein conserved region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.8   0.0   1.3e-09   1.4e-06       1     160 [.       9     156 ..       9     161 .. 0.79

  Alignments for each domain:
  == domain 1  score: 27.8 bits;  conditional E-value: 1.3e-09
   Gtr1_RagA   1 kvLLmGksgsGKtsmrsiiFdnylardtlrlgatidveksevrflgnltlnlwDcgGqeafveeylssqkeeifrnvgvliyVfDvesre.leedletl 98 
                 ++L +G  ++GK+++  ++      ++++  + t +   + ++ +g+++l  +D+gG e      +     +  ++ + ++y++D+ +re ++e+  +l
  KOO24974.1   9 RLLVVGLDNAGKSTLLTVLLR----NEVVPTAPTHQPVTDMIK-VGHMKLRAVDMGGHEIARRMWV-----QYAQEADGIVYIVDAADRErFQEAALEL 97 
                 5899***********999866....5889999*******9996.8************876555443.....34456799*********98799999999 PP

   Gtr1_RagA  99 keilealrqyspeakvfvlihKmDliqedereeifeerkeeireeieklekeeiqffaTSiw 160
                 +++l    +    a v vl +K+Dl +  ++ee++ +   + + ++ +++   + +++ Si+
  KOO24974.1  98 HKLLAS-PTLPASAAVLVLANKVDLPHAAQQEELYYSLGLDEIAQSGSTR--PVGLYLCSIF 156
                 998865.6788899**************9999998776544444433333..4566666665 PP

>> G-alpha  G-protein alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.7   0.1     0.027        28      24      41 ..       8      25 ..       5      34 .. 0.87
   2 !   16.5   0.0   3.5e-06    0.0037     199     236 ..      49      85 ..      27     121 .. 0.77

  Alignments for each domain:
  == domain 1  score: 3.7 bits;  conditional E-value: 0.027
                EEEEEEESTTSSHHHHHH CS
     G-alpha 24 vkllllGqseSGKsTilk 41
                 +ll++G +  GKsT+l 
  KOO24974.1  8 GRLLVVGLDNAGKSTLLT 25
                59*************986 PP

  == domain 2  score: 16.5 bits;  conditional E-value: 3.5e-06
                 T-TEEEEEEEE-SSHHHHHGTCCCTTTECEEEEEEEGG CS
     G-alpha 199 dsklefrivdvgGqrserkkWvpffddvdaiiFlvsls 236
                 +  +++r vd+gG+   r+ Wv++ +++d i+++v  +
  KOO24974.1  49 G-HMKLRAVDMGGHEIARRMWVQYAQEADGIVYIVDAA 85 
                 5.7899****************************9744 PP

>> Dynamin_N  Dynamin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.0   1.1e-05     0.012       2      33 ..      11      44 ..      10      52 .. 0.87
   2 ?    4.2   0.0      0.04        42     120     140 ..      66      86 ..      44     119 .. 0.74

  Alignments for each domain:
  == domain 1  score: 15.7 bits;  conditional E-value: 1.1e-05
                EEEEBTTTTHHHHHHHHHTS--S---SS..S--- CS
   Dynamin_N  2 avvGsqSsGKSSvlnaLlgedilprgpn..ptTr 33
                +vvG  ++GKS++l  Ll+ ++ p+ p+  p+T 
  KOO24974.1 11 LVVGLDNAGKSTLLTVLLRNEVVPTAPThqPVTD 44
                79**********************9987456665 PP

  == domain 2  score: 4.2 bits;  conditional E-value: 0.04
                 HHHHHHHSTTEEEEEEEETTS CS
   Dynamin_N 120 elvkeyikkadiilavtsanh 140
                 ++  +y+++ad i+++++a  
  KOO24974.1  66 RMWVQYAQEADGIVYIVDAAD 86 
                 78899************9875 PP

>> GTP_EFTU  Elongation factor Tu GTP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.1   0.1     0.055        58       7      25 ..      11      29 ..       8      40 .. 0.83
   2 !   13.8   0.0     3e-05     0.031      69     140 ..      50     127 ..      35     146 .. 0.82

  Alignments for each domain:
  == domain 1  score: 3.1 bits;  conditional E-value: 0.055
                EEEESTTSSHHHHHHHHHH CS
    GTP_EFTU  7 giighvDhGKtTLtdrLly 25
                 ++g  ++GK+TL+  Ll 
  KOO24974.1 11 LVVGLDNAGKSTLLTVLLR 29
                57777799******99985 PP

  == domain 2  score: 13.8 bits;  conditional E-value: 3e-05
                 SEEEEEEEESSSGGGHHHHHHHHHT-SEEEEEEETTTB..STHHHHHHHHHHHHTTTE....EEEEEESCGSTHHHHH CS
    GTP_EFTU  69 kylinliDtPGHvdFskevirglrvlDgavlvvdaveG..vepqteevlrlalkegvp....iivfiNKmDrlkaelk 140
                 + ++  +D  GH+   +   + ++ +Dg v +vda++    ++   e+ +l+ +  +p    + v+ NK+D ++a  +
  KOO24974.1  50 HMKLRAVDMGGHEIARRMWVQYAQEADGIVYIVDAADRerFQEAALELHKLLASPTLPasaaVLVLANKVDLPHAAQQ 127
                 5678899999**9999999999*************97655788888888999888888888899999*****954433 PP

>> cobW  CobW/HypB/UreG, nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.5   0.0     0.043        46       5      24 ..      12      31 ..       9      35 .. 0.83
   2 !   10.5   0.0   0.00031      0.33     109     160 ..      72     128 ..      57     136 .. 0.72

  Alignments for each domain:
  == domain 1  score: 3.5 bits;  conditional E-value: 0.043
                EEESTTCCHHHHHHHHHCT- CS
        cobW  5 ltGflGsGKTtLlnhllenr 24
                ++G   +GK+tLl+ ll+n+
  KOO24974.1 12 VVGLDNAGKSTLLTVLLRNE 31
                6677779********99875 PP

  == domain 2  score: 10.5 bits;  conditional E-value: 0.00031
                 CCCECEEEEEEETTTH.....CCHCCHHHHHHHHH..HTSSEEEEE-HHHHCHC..HH CS
        cobW 109 dltldavvavvDaknl....eaeeekieekaedql..aaadllvlnKtDlldeealle 160
                 + ++d++v++vDa+      ea+ e  + +a   l   aa l++ nK+Dl  ++++ e
  KOO24974.1  72 AQEADGIVYIVDAADRerfqEAALELHKLLASPTLpaSAAVLVLANKVDLPHAAQQ-E 128
                 5678*********87777765555666666666663244567778****9877755.4 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.8   0.1   1.5e-05     0.016      29     111 ..       3      87 ..       1     121 [. 0.79

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 1.5e-05
      AAA_25  29 llpagelallaGapgtGKttlaldlalava.....tGkpwlgpvapeqgkVlyvsaEdsedelrrRlravgealrddarllvldlagv 111
                 +  +++  l++G   +GK+tl++ l    +     t +p+++    + g   + + +++ +e++rR++ + ++ ++d+ ++++d+a++
  KOO24974.1   3 IFLKKGRLLVVGLDNAGKSTLLTVLLRNEVvptapTHQPVTDM--IKVGHMKLRAVDMGGHEIARRMWVQYAQ-EADGIVYIVDAADR 87 
                 55688999***************99988776766888888883..37888899999999999******66655.78999999998876 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.0   7.9e-05     0.083       2      96 ..      11      99 ..      10     120 .. 0.82

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 7.9e-05
      AAA_18  2 lltGtpGvGKttlakeLskrlgfgvnlrdvakenglllevdpealdeskrldedkldklldaleenssaleegknlvidghlaeleseaakdikk 96
                l+ G   +GK+tl   L +      ++  +a+ ++++++  +  + + + +d++ ++ + + + + ++ +++g ++++d    e ++eaa +++k
  KOO24974.1 11 LVVGLDNAGKSTLLTVLLRN-----EVVPTAPTHQPVTDMIKVGHMKLRAVDMGGHEIARRMWVQYAQ-EADGIVYIVDAADRERFQEAALELHK 99
                689**************666.....5999999999999999998999999999999999999999876.77777889999999999999998886 PP

>> Thymopoietin  Thymopoietin protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.1   0.00013      0.14      20      46 ..     115     141 ..     112     142 .. 0.90

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 0.00013
  Thymopoietin  20 vahnVaLPpgesrKdVYVqLYLkhlta 46 
                   +a++V+LP + ++ + Y  L L ++++
    KOO24974.1 115 LANKVDLPHAAQQEELYYSLGLDEIAQ 141
                   7*****************999988875 PP

>> FeoB_N  Ferrous iron transport protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.7   0.2    0.0022       2.3       5      24 ..      12      31 ..       9     145 .. 0.59

  Alignments for each domain:
  == domain 1  score: 7.7 bits;  conditional E-value: 0.0022
                EEESTTSSHHHHHHHHHTTS CS
      FeoB_N  5 lvGnpnvGkttlfnaltgak 24
                +vG  n+Gk+tl+  l   +
  KOO24974.1 12 VVGLDNAGKSTLLTVLLRNE 31
                67777777777777665443 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.3   0.00031      0.32      27     116 ..      10     111 ..       5     129 .. 0.68

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00031
      AAA_16  27 vllsGesGvGKsslvrellr.alekd...........ggiflrgkcdql.esaipysalaqalareellrqlldeaesaeleawrekleealaavpela 112
                 +l++G    GKs+l++ llr ++  +           ++  ++ ++++  + +i++ +++q++ + + +  + d+a+   +++++ +l++ la +p l+
  KOO24974.1  10 LLVVGLDNAGKSTLLTVLLRnEVVPTapthqpvtdmiKVGHMKLRAVDMgGHEIARRMWVQYAQEADGIVYIVDAADRERFQEAALELHKLLA-SPTLP 107
                 89999999*******999974333335555666654433335555555555558889999999999999999999888888888888888777.55555 PP

      AAA_16 113 gaea 116
                 +++a
  KOO24974.1 108 ASAA 111
                 5444 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.8   0.0    0.0056       5.9      98     128 ..       6      36 ..       3      58 .. 0.82
   2 ?    4.1   0.0     0.037        39      19      71 ..      79     130 ..      61     150 .. 0.70

  Alignments for each domain:
  == domain 1  score: 6.8 bits;  conditional E-value: 0.0056
                  TTSEEEEECSTTSSHHHHHHHHCTT-----S CS
  RsgA_GTPase  98 kdktsvlvGqSGvGKStLinallpelelktg 128
                  k+   ++vG   +GKStL+ +ll ++ + t+
   KOO24974.1   6 KKGRLLVVGLDNAGKSTLLTVLLRNEVVPTA 36 
                  556677899999**********998776665 PP

  == domain 2  score: 4.1 bits;  conditional E-value: 0.037
                  EEEEEESTTTT--HHHHH..HHHHHHHH.TT-EEEEEEE-GGG--HHHHHHHHHHH CS
  RsgA_GTPase  19 llivvslkepelslnlld..rfLvlaee.kgiepvivlnKiDlleeeeeleelkee 71 
                  + iv +++++++++  l+  ++L+     + + ++++ nK+Dl + ++    ++e 
   KOO24974.1  79 VYIVDAADRERFQEAALElhKLLASPTLpASAAVLVLANKVDLPHAAQ----QEEL 130
                  45777888888887765422666665431556777788*****99888....3333 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   0.0   0.00056      0.59      22      39 ..       7      24 ..       3      34 .. 0.82
   2 ?   -2.9   0.0       5.7     6e+03      40      58 ..      76      94 ..      76      96 .. 0.73
   3 ?   -1.1   0.1       1.5   1.6e+03      41      60 ..     108     127 ..     103     128 .. 0.81

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.00056
      AAA_29 22 kgatlltGpsGsGKSTll 39
                kg  l++G   +GKSTll
  KOO24974.1  7 KGRLLVVGLDNAGKSTLL 24
                56799************9 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 5.7
      AAA_29 40 DAiqalLvpakkvrfNkaa 58
                D i ++  +a + rf +aa
  KOO24974.1 76 DGIVYIVDAADRERFQEAA 94
                6677777778888888887 PP

  == domain 3  score: -1.1 bits;  conditional E-value: 1.5
      AAA_29  41 AiqalLvpakkvrfNkaane 60 
                 A +a+Lv a+kv+   aa++
  KOO24974.1 108 ASAAVLVLANKVDLPHAAQQ 127
                 78899999999999999986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (172 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       359  (0.0200234); expected 358.6 (0.02)
Passed bias filter:                      336  (0.0187406); expected 358.6 (0.02)
Passed Vit filter:                        57  (0.00317921); expected 17.9 (0.001)
Passed Fwd filter:                        17  (0.000948185); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              17  [number of targets reported over threshold]
# CPU time: 0.42u 0.26s 00:00:00.68 Elapsed: 00:00:00.39
# Mc/sec: 1318.88
//
Query:       KOO24975.1  [L=507]
Description: u4 u6 small nuclear ribonucleoprotein prp4 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    8.9e-41  137.1  13.8    1.8e-08   34.9   0.4    7.5  7  WD40         WD domain, G-beta repeat
    7.8e-12   45.3   0.0       0.11   12.8   0.0    5.9  6  ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain
    1.3e-10   40.6   2.3    3.6e-10   39.2   2.3    1.8  1  PRP4         pre-mRNA processing factor 4 (PRP4) like
      8e-06   25.9   0.0        1.1    9.1   0.0    3.5  4  eIF2A        Eukaryotic translation initiation factor eIF2A
    3.4e-05   22.7   0.2        1.1    7.8   0.0    4.2  5  Nup160       Nucleoporin Nup120/160
  ------ inclusion threshold ------
      0.059   13.2   0.0       0.13   12.1   0.0    1.5  1  HxlR         HxlR-like helix-turn-helix
      0.086   11.8   0.0        4.1    6.3   0.0    3.3  2  Ge1_WD40     WD40 region of Ge1, enhancer of mRNA-decapping p


Domain annotation for each model (and alignments):
>> WD40  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.0   0.0   5.8e-05      0.15      13      38 .]     220     245 ..     208     245 .. 0.89
   2 !   14.4   0.3   2.1e-05     0.054       2      37 ..     250     295 ..     249     295 .. 0.75
   3 !   28.9   0.1   5.3e-10   1.4e-06       1      38 []     300     338 ..     300     338 .. 0.93
   4 !   20.9   0.0   1.8e-07   0.00046       8      38 .]     349     380 ..     341     380 .. 0.86
   5 !   34.9   0.4     7e-12   1.8e-08       3      38 .]     386     422 ..     384     422 .. 0.95
   6 !   14.4   0.0   2.1e-05     0.053       2      38 .]     427     465 ..     426     465 .. 0.77
   7 !   13.4   0.0   4.5e-05      0.11       3      37 ..     471     506 ..     469     506 .. 0.92

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 5.8e-05
                 EEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40  13 vtslafspdgawlasGsdDgtvriWd 38 
                 ++ +af p ++++a+Gs+ + +++W+
  KOO24975.1 220 ISFVAFAPGSQLVATGSWSNLIKLWS 245
                 77899********************5 PP

  == domain 2  score: 14.4 bits;  conditional E-value: 2.1e-05
                 EEEEEEESS.SSEEEEE.........EETTSSEEEEEETTSEEEEE CS
        WD40   2 qclrtltGH.ssvtsla.........fspdgawlasGsdDgtvriW 37 
                 +++ tl+GH   +++la           p  a l+s+  Dgt ++W
  KOO24975.1 250 KQISTLKGHtERISGLAwhplvgggsLAPTTAHLVSAACDGTAKLW 295
                 67899****666****76666666666666666887755******* PP

  == domain 3  score: 28.9 bits;  conditional E-value: 5.3e-10
                 TEEEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40   1 gqclrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 
                 g++l++l+GH +  + +af+p+g+++++++ D t r+Wd
  KOO24975.1 300 GKPLGELKGHvGRLSRVAFHPSGRFVVTAGFDTTWRLWD 338
                 689*******88899***********99888*******9 PP

  == domain 4  score: 20.9 bits;  conditional E-value: 1.8e-07
                 ESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40   8 tGH.ssvtslafspdgawlasGsdDgtvriWd 38 
                 +GH    ++++ +pdg+++as++ D  vr+Wd
  KOO24975.1 349 EGHtRALYAVCCHPDGSLVASAGLDAVVRLWD 380
                 599555999***********9999*******9 PP

  == domain 5  score: 34.9 bits;  conditional E-value: 7e-12
                 EEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40   3 clrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 
                  ++t+ GH + + +l+ +p+g  lasGsdD+tvr+Wd
  KOO24975.1 386 AVQTFQGHvKQILGLDCHPHGLTLASGSDDHTVRLWD 422
                 689*********************************9 PP

  == domain 6  score: 14.4 bits;  conditional E-value: 2.1e-05
                 EEEEEEESSSS.EEEEE.EETTSSEEEEEETTSEEEEEE CS
        WD40   2 qclrtltGHss.vtsla.fspdgawlasGsdDgtvriWd 38 
                 + l+tl +Hss +++++  +  g++l+s s+D++v++W+
  KOO24975.1 427 KSLYTLPAHSSlISHVRyEPGAGRFLLSTSYDNKVKLWS 465
                 56899****7779***844444444778899*******5 PP

  == domain 7  score: 13.4 bits;  conditional E-value: 4.5e-05
                 EEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEE CS
        WD40   3 clrtltGH.ssvtslafspdgawlasGsdDgtvriW 37 
                 +l+t +GH + v + +  +dg+ +a++ +D+t ++W
  KOO24975.1 471 LLKTMEGHeGRVMCGDIADDGKHFATAAMDRTWKLW 506
                 68999***777*99999*********999******* PP

>> ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.0      0.81   2.1e+03      44      70 ..      55      81 ..      40      92 .. 0.76
   2 !    6.7   0.0    0.0036       9.1      35      90 ..     214     268 ..     192     269 .. 0.88
   3 ?    4.0   0.0     0.024        62      39      71 ..     311     343 ..     293     349 .. 0.86
   4 !   11.0   0.0   0.00016      0.42      38      80 ..     352     394 ..     346     398 .. 0.85
   5 !   12.8   0.0   4.3e-05      0.11      39      89 ..     395     444 ..     391     446 .. 0.89
   6 ?    4.4   0.0     0.018        47      40      86 ..     438     484 ..     435     488 .. 0.83

  Alignments for each domain:
  == domain 1  score: -0.9 bits;  conditional E-value: 0.81
  ANAPC4_WD40 44 LaWkpdgklLavaysdgevrlldaesg 70
                 ++ ++  + Lav ++d++v+l   e g
   KOO24975.1 55 IEIRKRARELAVPTNDNAVKLKLREFG 81
                 556677788999999999998665555 PP

  == domain 2  score: 6.7 bits;  conditional E-value: 0.0036
  ANAPC4_WD40  35 dkedsevrsLaWkpdgklLavaysdgevrlldaesgkvvhslsvksekavtclgWg 90 
                   ++++ ++ +a+ p  +l a +   + ++l ++ + k +++l+ ++e +++ l W 
   KOO24975.1 214 FADERPISFVAFAPGSQLVATGSWSNLIKLWSVPDCKQISTLKGHTE-RISGLAWH 268
                  46778899999*******************************99998.6**99995 PP

  == domain 3  score: 4.0 bits;  conditional E-value: 0.024
  ANAPC4_WD40  39 sevrsLaWkpdgklLavaysdgevrlldaesgk 71 
                  ++ + +a++p+g++ + a  d++ rl da++ +
   KOO24975.1 311 GRLSRVAFHPSGRFVVTAGFDTTWRLWDAQTCQ 343
                  5667899*********************99865 PP

  == domain 4  score: 11.0 bits;  conditional E-value: 0.00016
  ANAPC4_WD40  38 dsevrsLaWkpdgklLavaysdgevrlldaesgkvvhslsvks 80 
                   +   +++ +pdg+l a a  d  vrl d+ +g+ v++++ + 
   KOO24975.1 352 TRALYAVCCHPDGSLVASAGLDAVVRLWDVRTGRAVQTFQGHV 394
                  5566678999***************************998765 PP

  == domain 5  score: 12.8 bits;  conditional E-value: 4.3e-05
  ANAPC4_WD40  39 sevrsLaWkpdgklLavaysdgevrlldaesgkvvhslsvksekavtclgW 89 
                  +++ +L  +p g  La + +d +vrl d  ++k + +l+++s+  ++ + +
   KOO24975.1 395 KQILGLDCHPHGLTLASGSDDHTVRLWDLRKKKSLYTLPAHSSL-ISHVRY 444
                  67889999*********************************995.877765 PP

  == domain 6  score: 4.4 bits;  conditional E-value: 0.018
  ANAPC4_WD40  40 evrsLaWkp.dgklLavaysdgevrlldaesgkvvhslsvksekavtc 86 
                   +++++++p  g++L     d++v+l +  +  ++++++ ++  +v+c
   KOO24975.1 438 LISHVRYEPgAGRFLLSTSYDNKVKLWSTRDYALLKTMEGHEG-RVMC 484
                  567777776479*******************999999998887.4766 PP

>> PRP4  pre-mRNA processing factor 4 (PRP4) like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.2   2.3   1.4e-13   3.6e-10       1      28 [.      73     100 ..      73     101 .. 0.96

  Alignments for each domain:
  == domain 1  score: 39.2 bits;  conditional E-value: 1.4e-13
        PRP4   1 VrrrLRelGEPitLFGEthadRreRLrk 28 
                 V+ +LRe GEPi LFGE   +RreRLr+
  KOO24975.1  73 VKLKLREFGEPIALFGEAAPERRERLRD 100
                 899************************7 PP

>> eIF2A  Eukaryotic translation initiation factor eIF2A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.7   0.0   0.00058       1.5     100     180 ..     217     299 ..     206     305 .. 0.81
   2 !    9.1   0.0   0.00044       1.1     105     162 ..     315     371 ..     304     397 .. 0.71
   3 ?    2.5   0.0     0.044   1.1e+02      85     178 ..     376     466 ..     370     478 .. 0.66
   4 ?    3.6   0.0      0.02        52      78     162 ..     411     498 ..     401     505 .. 0.66

  Alignments for each domain:
  == domain 1  score: 8.7 bits;  conditional E-value: 0.00058
                 EES--EEEE-TTSSEEEEE-TTSSS-EEEEEETTTTEEEEEEE..-TT--EEEE-T...TSSEEEEEE-TTT-SSS-EEEEEETTT CS
       eIF2A 100 eqkrNtiffspkgklvllaGfgnlaGeleiwdvkkkkkiakae..aanatlvewsp...dgryvlTattaprlrvdngfkiwsysG 180
                 e++   + f p  +lv+++   nl   +++w v ++k+i++++   +  + + w+p    g++  T     +   d + k+w ++G
  KOO24975.1 217 ERPISFVAFAPGSQLVATGSWSNL---IKLWSVPDCKQISTLKghTERISGLAWHPlvgGGSLAPTTAHLVSAACDGTAKLWPLEG 299
                 56778899****************...*************9973256789999999554467777777777888888888888877 PP

  == domain 2  score: 9.1 bits;  conditional E-value: 0.00044
                 EEEE-TTSSEEEEE-TTSSS-EEEEEETTTTEEEEEEE.-TT-.-EEEE-TTSSEEEEEE CS
       eIF2A 105 tiffspkgklvllaGfgnlaGeleiwdvkkkkkiakae.aana.tlvewspdgryvlTat 162
                  + f+p+g++v++aGf  +     +wd ++++++  +e ++ a   v  +pdg++v+ a 
  KOO24975.1 315 RVAFHPSGRFVVTAGFDTT---WRLWDAQTCQELLLQEgHTRAlYAVCCHPDGSLVASAG 371
                 58899***********988...89999999988765441333312344568888777665 PP

  == domain 3  score: 2.5 bits;  conditional E-value: 0.044
                 EEEEECS.CEEEEEEEEES--EEEE-TTSSEEEEE-TTSSS-EEEEEETTTTEEEEEEE-TT-..-EEEE-TTSSEEEEEE-TTT-SSS-EEEEEET CS
       eIF2A  85 vslfdlk.vkviskleeqkrNtiffspkgklvllaGfgnlaGeleiwdvkkkkkiakaeaana..tlvewspdgryvlTattaprlrvdngfkiwsy 178
                 v l+d++ ++++ +++ + +  +  + + + + la  g+   ++ +wd  kkk++ ++ a  +  ++v ++p    +l +t++     dn +k+ws 
  KOO24975.1 376 VRLWDVRtGRAVQTFQGHVKQILGLDCHPHGLTLAS-GSDDHTVRLWDLRKKKSLYTLPAHSSliSHVRYEPGAGRFLLSTSY-----DNKVKLWST 466
                 556666445566666666666655555555444443.2223478999*99999998875544323899999988778878887.....999999986 PP

  == domain 4  score: 3.6 bits;  conditional E-value: 0.02
                 ESSSSCEEEEEECS.CEEEEEEEEES-..-EEEE-T.TSSEEEEE-TTSSS-EEEEEETTTTEEEEEEE-TT-.-EE.EE-TTSSEEEEEE CS
       eIF2A  78 yGkmpakvslfdlk.vkviskleeqkr..Ntiffsp.kgklvllaGfgnlaGeleiwdvkkkkkiakaeaana.tlv.ewspdgryvlTat 162
                  G  + +v l+dl+  k +++l +++     + ++p  g+++l   + n    +++w + ++  ++++e  +  +++ +   dg++++Ta 
  KOO24975.1 411 SGSDDHTVRLWDLRkKKSLYTLPAHSSliSHVRYEPgAGRFLLSTSYDNK---VKLWSTRDYALLKTMEGHEGrVMCgDIADDGKHFATAA 498
                 56777777777775355566666555322567777745777777777775...88888888888888875443144457788888888876 PP

>> Nup160  Nucleoporin Nup120/160
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.0      0.16     4e+02     189     255 ..     190     254 ..     173     263 .. 0.67
   2 ?   -4.0   0.0       1.6   4.1e+03     231     252 ..     281     302 ..     278     303 .. 0.84
   3 !    7.8   0.0   0.00043       1.1     225     256 ..     359     390 ..     348     399 .. 0.84
   4 !    4.4   0.1    0.0048        12     234     255 ..     410     431 ..     402     438 .. 0.87
   5 !    4.6   0.0    0.0042        11     229     257 ..     448     476 ..     433     483 .. 0.82

  Alignments for each domain:
  == domain 1  score: -0.7 bits;  conditional E-value: 0.16
                 ------B--TTTT.TSS--SS---TT-ECEEEEET.....TTTEEEEEETT-EEEEEETTTTEEEEE CS
      Nup160 189 pksfllslsgllglladpsrrksgasvalsldvavavveigqtylfalsrdgkLrvWnlltgkclat 255
                  + +  sls+l ++l+ + ++ s+   +  ++++  ++  g++++++ s  + +++W++ + k+++t
  KOO24975.1 190 VAAYENSLSELGRRLKGVANQLSNFADERPISFVA-FAP-GSQLVATGSWSNLIKLWSVPDCKQIST 254
                 55555566666665555555544444333333333.443.999999999999999999999999888 PP

  == domain 2  score: -4.0 bits;  conditional E-value: 1.6
                 TEEEEEETT-EEEEEETTTTEE CS
      Nup160 231 tylfalsrdgkLrvWnlltgkc 252
                 ++l+++  dg+ ++W l+ gk+
  KOO24975.1 281 AHLVSAACDGTAKLWPLEGGKP 302
                 78999999*******9998875 PP

  == domain 3  score: 7.8 bits;  conditional E-value: 0.00043
                 ....TTTEEEEEETT-EEEEEETTTTEEEEEE CS
      Nup160 225 vveigqtylfalsrdgkLrvWnlltgkclati 256
                 + + + ++++++ +d ++r+W+++tg+ + t+
  KOO24975.1 359 CCHPDGSLVASAGLDAVVRLWDVRTGRAVQTF 390
                 55557789999*****************9985 PP

  == domain 4  score: 4.4 bits;  conditional E-value: 0.0048
                 EEEETT-EEEEEETTTTEEEEE CS
      Nup160 234 falsrdgkLrvWnlltgkclat 255
                 ++ s d+++r+W+l+ +k l+t
  KOO24975.1 410 ASGSDDHTVRLWDLRKKKSLYT 431
                 55578************99987 PP

  == domain 5  score: 4.6 bits;  conditional E-value: 0.0042
                 TTTEEEEEETT-EEEEEETTTTEEEEEEE CS
      Nup160 229 gqtylfalsrdgkLrvWnlltgkclatid 257
                 +  +l++ s d+k+++W+++++ +l t++
  KOO24975.1 448 AGRFLLSTSYDNKVKLWSTRDYALLKTME 476
                 557999****************9999875 PP

>> HxlR  HxlR-like helix-turn-helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   5.1e-05      0.13      22      85 ..     155     217 ..     151     219 .. 0.87

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 5.1e-05
                 HHHHHHSTTS-HHHHHHHHHHHHHTTS.EEEEEESSSS-EEEEEE-TCGGGGHHHHHHHHHHHHH CS
        HxlR  22 selkralpkisqkmLaqrLreLeqdgl.ierevypevPpkveYsltekGrslepvlqelkkwgee 85 
                 +elk+a   i++  La+  r+Le+++  +ere+ +      e sl+e Gr l+ v ++l+++++e
  KOO24975.1 155 EELKTARSWIARDSLARAARRLEAERTrVEREASDVAA--YENSLSELGRRLKGVANQLSNFADE 217
                 589999999**************998647887766655..59*****************999875 PP

>> Ge1_WD40  WD40 region of Ge1, enhancer of mRNA-decapping protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.3   0.0    0.0016       4.1     179     217 ..     343     382 ..     324     478 .. 0.84
   2 ?    0.2   0.0      0.11   2.9e+02     184     214 ..     475     506 ..     460     507 .] 0.78

  Alignments for each domain:
  == domain 1  score: 6.3 bits;  conditional E-value: 0.0016
    Ge1_WD40 179 egllkieehs.liveaafspdGtalatasedGevkffqvy 217
                 + ll  e h+  +      pdG  +a a  d +v+++ v 
  KOO24975.1 343 QELLLQEGHTrALYAVCCHPDGSLVASAGLDAVVRLWDVR 382
                 4444445555477778889*****************9986 PP

  == domain 2  score: 0.2 bits;  conditional E-value: 0.11
    Ge1_WD40 184 ieehs.liveaafspdGtalatasedGevkff 214
                 +e h   ++++ ++ dG   ata++d + k++
  KOO24975.1 475 MEGHEgRVMCGDIADDGKHFATAAMDRTWKLW 506
                 44554489999999999999999999887766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (507 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       803  (0.0447878); expected 358.6 (0.02)
Passed bias filter:                      503  (0.0280551); expected 358.6 (0.02)
Passed Vit filter:                        50  (0.00278878); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.63u 0.25s 00:00:00.88 Elapsed: 00:00:00.42
# Mc/sec: 3582.61
//
Query:       KOO24976.1  [L=675]
Description: asparaginyl-tRNA synthetase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.5e-76  257.5   0.0    2.9e-76  256.5   0.0    1.5  2  tRNA-synt_2      tRNA synthetases class II (D, K and N)
    5.2e-08   32.8   0.0    9.8e-08   31.9   0.0    1.5  1  tRNA_anti-codon  OB-fold nucleic acid binding domain
    0.00026   21.5   0.0    0.00064   20.2   0.0    1.6  1  DUF5582          Family of unknown function (DUF5582)
      0.005   16.0   0.3     0.0095   15.1   0.1    1.5  2  DUF5586          Family of unknown function (DUF5586)
  ------ inclusion threshold ------
      0.023   14.4   0.0      0.051   13.3   0.0    1.7  1  Dpy-30           Dpy-30 motif


Domain annotation for each model (and alignments):
>> tRNA-synt_2  tRNA synthetases class II (D, K and N)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.0      0.77   2.8e+03     124     161 ..       8      42 ..       7      99 .. 0.65
   2 !  256.5   0.0   8.2e-80   2.9e-76       3     313 ..     307     669 ..     305     670 .. 0.95

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 0.77
                  T-SCHHHHHHHHHHHHHHHHHHHHCSCCCCCHTTTTTS CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  tRNA-synt_2 124 fieeedimqvleelikslvkevlessakdiefvirrns 161
                  ++e++ i+ +l +++++lvke    +a+ i+f i+   
   KOO24976.1   8 YLEKHSITGMLNGIVEDLVKEQ---PADPITFLINGLL 42 
                  6667777777777777777776...5555666665544 PP

  == domain 2  score: 256.5 bits;  conditional E-value: 8.2e-80
                  CHHHHTHHHHCCSHHHHHHHHHHHHHHHHHHHHHHHTT-EE----SEESS--SSSS--EEEEETTT.....T.........EEE....-E-S-SHHHH CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx....xx.........xxx....xxxxxxxxxx RF
  tRNA-synt_2   3 elrlknryldlrtekvskvlrlrstvtkavrkyleengfieietPiLsksdteegarlFkvksrek....ek.........eff....aLtqspqlyl 83 
                  e+++   ++++rt  + +v+r+r++++ a+++++++ gf+ ++ P+++ +d+e++++ F+v++       +k         +ff    +Lt+s+ql  
   KOO24976.1 307 ETLRAITHMRPRTGVMGAVMRIRNSLAYATHNFFQQSGFMYVHAPLITGADCEGAGEMFQVTTLDLakplPKlgndvdytkDFFgkpaFLTVSGQLNG 404
                  6778889******************************************************88777666611555566666999************** PP

                  HHHHHCTHSEEEEEEEEE--S--BTTB-S-CEEEEEEEEET-SCHHHHHHHHHHHHHHHHHHHHCSCCCCCHTTTTTS.................... CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.................... RF
  tRNA-synt_2  84 ellivagidrvfqiaraFRaEdsrtdrhlaEFtqieaemsfieeedimqvleelikslvkevlessakdiefvirrns.................... 161
                  e+++ a ++ +++++++FRaE+s+t+rhlaEF++ie e++f +  + m+++e  +++++++vle++a+d+ f  + +                     
   KOO24976.1 405 EYYACA-FGSIYTFGPTFRAENSNTTRHLAEFWMIEPEIAFCDLPKNMDCAESYLRHCFRHVLENNADDLAFLEEFEInrkadegivdteaklrerle 501
                  ******.***************************************************************999988878999**************98 PP

                  EE-SSS-EEEEHHHHHHHHHTS...............-SS--HHHHHHHHHHS--SEEEEEEEBGGGSTTCBBBSTTS...TTBBSEEEEEETTE.EE CS
                  xxxxxxxxxxxxxxxxxxxxxx...............xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxx.xx RF
  tRNA-synt_2 162 kdlkkpfkrltykeaieklnei...............gkdldkaderalvkkeknepvfvtdfPaelkpFyarkeedd...kkltesyDllingv.El 240
                    +k+ f rl+y+eaie++++                g++l++++e++l +   ++pv v+++P+  k Fy+r +e     k++++++D+l++ v E+
   KOO24976.1 502 VVVKNDFGRLPYTEAIEIVSKVagpregvpwefppvwGQELQTEHEKYLAEVVYKKPVIVYNYPKGCKAFYMRMNEGCapgKETVAAMDVLFPRVgEM 599
                  778888*************999***************999************************************99999***************** PP

                  EEEEEB--SHHHHHHHHHHCCHHSSSGGGGHHHHHHHHCT--SEEEEEEEHHHHHHHHCT-SSGGGCSSS-XX CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  tRNA-synt_2 241 vgGslRiedpeeleeklkskgldeeaeekfswylealeyGapphgGlglGldRlvmlllgsesIrdviaFPkl 313
                  vgGs+R+e+ ++l +k+ + gl+   ee +s yl+ +++G+ ph+G+g+G++Rlv + +g+ +Ird+i+FP++
   KOO24976.1 600 VGGSQREERLDILLAKMAEMGLK---EEDYSGYLDTRRFGSQPHAGFGVGFERLVLYATGMGNIRDAIPFPRT 669
                  ***********************...*********************************************97 PP

>> tRNA_anti-codon  OB-fold nucleic acid binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.9   0.0   2.7e-11   9.8e-08       1      76 []     208     289 ..     208     289 .. 0.90

  Alignments for each domain:
  == domain 1  score: 31.9 bits;  conditional E-value: 2.7e-11
                      EEEEEEEEEEEEEEETTEEEEEEEETT..EEEEEEEET....HHHHHHHTTS-TTSEEEEEEEEEECTTS..SEEEEEEEEEEE CS
  tRNA_anti-codon   1 VtvaGrvtsisdrsggkvifidlrDgt..griqvvlfr....eeatklaenlkeGdvvrvtGrvkrrpgg..elelkveeiell 76 
                      V+v G+v++   r  +k++f+ ++Dg+    +q+v+++    e++ + a    +G  vrv+G +k++p++  + el ve+ie+l
       KOO24976.1 208 VVVMGWVKTN--RTQKKLCFMSINDGScaSHLQLVVTKdevpEAMWEAATGAGNGASVRVEGCLKASPKEgqKWELPVESIEVL 289
                      89********..***************999********888777777777777**************555579********986 PP

>> DUF5582  Family of unknown function (DUF5582)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.2   0.0   1.8e-07   0.00064     113     143 ..       8      38 ..       5      41 .. 0.95

  Alignments for each domain:
  == domain 1  score: 20.2 bits;  conditional E-value: 1.8e-07
     DUF5582 113 ymekhhiLqifqqitenLvyekPedPLsfmL 143
                 y+ekh+i  ++  i e+Lv e+P dP++f++
  KOO24976.1   8 YLEKHSITGMLNGIVEDLVKEQPADPITFLI 38 
                 9****************************97 PP

>> DUF5586  Family of unknown function (DUF5586)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.1   2.7e-06    0.0095       5      49 ..       6      50 ..       3      86 .. 0.77
   2 ?   -3.3   0.0         1   3.7e+03     166     197 ..     585     617 ..     583     621 .. 0.75

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 2.7e-06
     DUF5586  5 qsyleknkigplfeelmtklitetpdhpipflidhlqtkqespgk 49
                 +ylek+ i+ +++ ++  l+ e p +pi fli+ l     ++g+
  KOO24976.1  6 PAYLEKHSITGMLNGIVEDLVKEQPADPITFLINGLLKESTKRGQ 50
                58********************************99655544444 PP

  == domain 2  score: -3.3 bits;  conditional E-value: 1
     DUF5586 166 lgaynsllrprvvGewvG..reeedadplaaeml 197
                 ++a   +l prv Ge vG  + ee +d l a+m 
  KOO24976.1 585 TVAAMDVLFPRV-GEMVGgsQREERLDILLAKMA 617
                 566667899995.999995546888999998885 PP

>> Dpy-30  Dpy-30 motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.0   1.4e-05     0.051       4      40 ..       7      44 ..       4      46 .. 0.86

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 1.4e-05
                HHHHHHTHHHHHHHHHH.HHHH--SSHHHHHHHHHHHH CS
      Dpy-30  4 kYLnktvaPiLlqGLte.lAkeRPeDPieyLAeYLlkn 40
                +YL+k+  +  l G  e l ke+P DPi +L + Llk+
  KOO24976.1  7 AYLEKHSITGMLNGIVEdLVKEQPADPITFLINGLLKE 44
                799999999999998655*************9988886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (675 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       899  (0.0501422); expected 358.6 (0.02)
Passed bias filter:                      778  (0.0433934); expected 358.6 (0.02)
Passed Vit filter:                       126  (0.00702772); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.73u 0.31s 00:00:01.04 Elapsed: 00:00:00.47
# Mc/sec: 4328.23
//
Query:       KOO24977.1  [L=293]
Description: hypothetical protein Ctob_006109 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.4e-11   43.3   0.0    8.8e-11   42.3   0.0    1.6  1  Methyltransf_11  Methyltransferase domain
    1.4e-06   28.2   0.0    1.9e-06   27.8   0.0    1.2  1  Methyltransf_31  Methyltransferase domain
    4.3e-06   27.3   0.0    8.8e-06   26.4   0.0    1.6  1  Methyltransf_25  Methyltransferase domain
    1.3e-05   24.6   0.0    2.1e-05   24.0   0.0    1.4  1  Ubie_methyltran  ubiE/COQ5 methyltransferase family
    4.7e-05   22.1   0.0      6e-05   21.8   0.0    1.1  1  Methyltransf_29  Putative S-adenosyl-L-methionine-dependent m
    6.4e-05   23.6   0.0    0.00011   22.8   0.0    1.4  1  Methyltransf_12  Methyltransferase domain
    0.00035   20.5   0.0    0.00054   19.9   0.0    1.2  1  Methyltransf_8   Hypothetical methyltransferase
    0.00051   19.9   0.0    0.00068   19.5   0.0    1.3  1  Methyltransf_23  Methyltransferase domain


Domain annotation for each model (and alignments):
>> Methyltransf_11  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.3   0.0   3.9e-14   8.8e-11      53      96 .]     168     212 ..     119     212 .. 0.81

  Alignments for each domain:
  == domain 1  score: 42.3 bits;  conditional E-value: 3.9e-14
                      C.CTSS-TT-EEEEEEES-CCC-CCHHHHHHHHHHHEEEEEEEEE CS
  Methyltransf_11  53 e.klpfednsfDlvvssevlhhvedpekalkeiaRvLkpgGllvi 96 
                        klp+ed+sfD+v++  +++++  p ++++e+ RvLkpgG +++
       KOO24977.1 168 DpKLPYEDESFDVVTCVVSVDYLIHPLDVFREVNRVLKPGGQFIL 212
                      3469*******************99****************9985 PP

>> Methyltransf_31  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.8   0.0   8.5e-10   1.9e-06      68     127 ..     170     232 ..     147     262 .. 0.79

  Alignments for each domain:
  == domain 1  score: 27.8 bits;  conditional E-value: 8.5e-10
  Methyltransf_31  68 kl.ledekfDlilsnevlnaladpdkileeiervlkpggilliedpr..llaelpakveeesk 127
                      kl +ede+fD++++   +++l +p ++++e+ rvlkpgg +++++ +    ++ +a++ ++s+
       KOO24977.1 170 KLpYEDESFDVVTCVVSVDYLIHPLDVFREVNRVLKPGGQFILSQSNrcFPSKAIAMWLQQSD 232
                      444***********9999**************************9995533333355555544 PP

>> Methyltransf_25  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.4   0.0   3.9e-09   8.8e-06      52      97 .]     164     208 ..     132     208 .. 0.80

  Alignments for each domain:
  == domain 1  score: 26.4 bits;  conditional E-value: 3.9e-09
                      ESBC.CGBSSSTTTEEEEEEESTGGGSSHHHHHHHHHHHHHHEEEEE CS
  Methyltransf_25  52 qgda.edlpfedgsfDlvvssgalhhlsdedlekalkeiarvLkpgG 97 
                      + ++  +lp+ed+sfD+v+++ ++ +l +    ++++e+ rvLkpgG
       KOO24977.1 164 NLNVdPKLPYEDESFDVVTCVVSVDYLIH--PLDVFREVNRVLKPGG 208
                      44553469************977999543..347************9 PP

>> Ubie_methyltran  ubiE/COQ5 methyltransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.0   0.0   9.3e-09   2.1e-05     109     151 ..     170     212 ..     109     234 .. 0.85

  Alignments for each domain:
  == domain 1  score: 24.0 bits;  conditional E-value: 9.3e-09
                      T-TTS-T-EEEEEEES-GGG-S-HHHHHHHHHHHEEEEEEEEE CS
  Ubie_methyltran 109 eLpfeddsfDvvtvsfGlrnvtDklkaLkeayrvlkpGGrlvv 151
                      +Lp+ed+sfDvvt    +  +   l +++e+ rvlkpGG+++ 
       KOO24977.1 170 KLPYEDESFDVVTCVVSVDYLIHPLDVFREVNRVLKPGGQFIL 212
                      8***************************************864 PP

>> Methyltransf_29  Putative S-adenosyl-L-methionine-dependent methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.8   0.0   2.7e-08     6e-05     174     220 ..     170     215 ..     148     238 .. 0.90

  Alignments for each domain:
  == domain 1  score: 21.8 bits;  conditional E-value: 2.7e-08
  Methyltransf_29 174 rlpyPsrsfdlihCsrCridwteedgilllevdRvlRpgGyfvlsap 220
                      +lpy  +sfd++ C    +d+  +   ++ ev+Rvl+pgG f+ls +
       KOO24977.1 170 KLPYEDESFDVVTCV-VSVDYLIHPLDVFREVNRVLKPGGQFILSQS 215
                      8*************7.68**************************976 PP

>> Methyltransf_12  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.8   0.0     5e-08   0.00011      56      99 .]     162     210 ..     131     210 .. 0.72

  Alignments for each domain:
  == domain 1  score: 22.8 bits;  conditional E-value: 5e-08
  Methyltransf_12  56 ldlldldgg.....ssfDlvvasnvlhhlkdirevldnirklLkpgGrl 99 
                         l+ d++     +sfD+v++   + +l ++ +v++++ ++LkpgG++
       KOO24977.1 162 PKNLNVDPKlpyedESFDVVTCVVSVDYLIHPLDVFREVNRVLKPGGQF 210
                      111222223555668********************************96 PP

>> Methyltransf_8  Hypothetical methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.9   0.0   2.4e-07   0.00054     115     163 ..     170     219 ..     156     230 .. 0.81

  Alignments for each domain:
  == domain 1  score: 19.9 bits;  conditional E-value: 2.4e-07
                     S-S--TT-EEEEEEES--.-SS-HHHHHHHHHHHEEEEEEEEEEEEGGG- CS
  Methyltransf_8 115 kvPledesvdvavfclsl.mgtnladflkeanrvlkvGGllkvaevksrf 163
                     k+P edes dv+ + +s+       d  +e+nrvlk+GG + +++ +  f
      KOO24977.1 170 KLPYEDESFDVVTCVVSVdYLIHPLDVFREVNRVLKPGGQFILSQSNRCF 219
                     89**********9999983234556788***********99887765555 PP

>> Methyltransf_23  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.5   0.0   3.1e-07   0.00068      75     125 ..     170     223 ..      46     249 .. 0.76

  Alignments for each domain:
  == domain 1  score: 19.5 bits;  conditional E-value: 3.1e-07
  Methyltransf_23  75 eaaepqgkfdlIvlrevlehvpdppellrqiatllkpgGylllseplasl....k 125
                      + ++++++fd++++  +   + +p  ++r +++ lkpgG ++ls +++ +    +
       KOO24977.1 170 KLPYEDESFDVVTCVVSVDYLIHPLDVFREVNRVLKPGGQFILSQSNR-CfpskA 223
                      3445777**************************************986.434432 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (293 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       314  (0.0175135); expected 358.6 (0.02)
Passed bias filter:                      301  (0.0167884); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.49u 0.25s 00:00:00.74 Elapsed: 00:00:00.44
# Mc/sec: 2010.38
//
Query:       KOO24978.1  [L=351]
Description: putative calcium-binding protein cml27-like protein, partial [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.4e-32  108.8  20.0    1.5e-05   24.5   0.1    6.9  8  EF-hand_6     EF-hand domain
    2.1e-27   95.4  18.4    1.6e-09   38.0   0.1    4.2  5  EF-hand_7     EF-hand domain pair
    2.5e-25   86.1  22.6      4e-05   22.9   0.1    6.6  7  EF-hand_1     EF hand
    3.9e-18   64.1  18.2      0.001   18.5   0.1    6.1  6  EF-hand_5     EF hand
    4.3e-18   64.9  19.0    3.3e-07   30.0   0.0    6.3  6  EF-hand_8     EF-hand domain pair
     0.0039   17.5   3.2        4.1    7.8   0.0    4.1  4  SPARC_Ca_bdg  Secreted protein acidic and rich in cysteine Ca
     0.0049   17.2   0.2         14    6.1   0.0    3.8  4  EF-hand_14    EF-hand domain
     0.0065   16.4   0.0        1.2    9.0   0.0    2.4  2  Armet         Degradation arginine-rich protein for mis-foldi
     0.0091   15.9   0.4          7    6.5   0.0    3.4  3  Caleosin      Caleosin related protein
  ------ inclusion threshold ------
      0.047   13.6   0.0        2.5    8.0   0.0    2.5  2  GIT_CC        GIT coiled-coil Rho guanine nucleotide exchange
       0.13   11.7   1.5        4.3    6.9   0.2    2.5  2  TERF2_RBM     Telomeric repeat-binding factor 2 Rap1-binding 
        2.1    8.3   5.7         14    5.7   0.4    3.4  3  EF-hand_4     Cytoskeletal-regulatory complex EF hand


Domain annotation for each model (and alignments):
>> EF-hand_6  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.0       8.5   1.3e+04      10      19 ..      19      28 ..      19      28 .. 0.81
   2 !   12.5   0.3   7.5e-05      0.11       7      28 ..      40      61 ..      40      66 .. 0.91
   3 !   20.0   0.2   2.9e-07   0.00044       1      24 [.      71      94 ..      71     100 .. 0.92
   4 !   20.8   0.0   1.6e-07   0.00023       2      31 .]     108     136 ..     107     136 .. 0.92
   5 !   20.9   0.0   1.5e-07   0.00022       4      28 ..     146     170 ..     144     178 .. 0.91
   6 ?   -2.2   0.0       3.8   5.7e+03      20      30 ..     229     238 ..     228     239 .. 0.75
   7 !   24.5   0.1     1e-08   1.5e-05       1      31 []     241     270 ..     241     270 .. 0.91
   8 !   19.8   0.1   3.3e-07   0.00049       1      28 [.     277     304 ..     277     314 .. 0.91

  Alignments for each domain:
  == domain 1  score: -3.3 bits;  conditional E-value: 8.5
   EF-hand_6 10 DkdgdGkida 19
                D+ g+G++d+
  KOO24978.1 19 DVAGSGEVDF 28
                6779***996 PP

  == domain 2  score: 12.5 bits;  conditional E-value: 7.5e-05
   EF-hand_6  7 klfDkdgdGkidaeElrkalrk 28
                ++fD ++d k+d+ E+ ++lr+
  KOO24978.1 40 DAFDANDDKKLDFVEFCAFLRD 61
                58******************94 PP

  == domain 3  score: 20.0 bits;  conditional E-value: 2.9e-07
   EF-hand_6  1 elreaFklfDkdgdGkidaeElrk 24
                elr+ F+++D +g+G+id++E  +
  KOO24978.1 71 ELRSRFDALDENGNGFIDMDEYLQ 94
                699*****************9766 PP

  == domain 4  score: 20.8 bits;  conditional E-value: 1.6e-07
   EF-hand_6   2 lreaFklfDkdgdGkidaeElrkalrkalg 31 
                 + ++F+++D d +G++d+ E+ ka + alg
  KOO24978.1 108 VVDLFRAWDEDQSGSVDKREFYKAVK-ALG 136
                 5799********************99.887 PP

  == domain 5  score: 20.9 bits;  conditional E-value: 1.5e-07
   EF-hand_6   4 eaFklfDkdgdGkidaeElrkalrk 28 
                 ++F+ +D d++Gk+ ++El k+lrk
  KOO24978.1 146 AVFDSLDEDRSGKLEYAELNKMLRK 170
                 69**********************6 PP

  == domain 6  score: -2.2 bits;  conditional E-value: 3.8
   EF-hand_6  20 eElrkalrkal 30 
                 e+lr++l+ + 
  KOO24978.1 229 EQLRDVLK-MH 238
                 78999999.55 PP

  == domain 7  score: 24.5 bits;  conditional E-value: 1e-08
   EF-hand_6   1 elreaFklfDkdgdGkidaeElrkalrkalg 31 
                 +l+++F+++D dg+G +d++E+rka   alg
  KOO24978.1 241 KLMDLFREWDDDGNGAVDKHEFRKAVA-ALG 270
                 5899********************987.665 PP

  == domain 8  score: 19.8 bits;  conditional E-value: 3.3e-07
   EF-hand_6   1 elreaFklfDkdgdGkidaeElrkalrk 28 
                 e++++F+ +D dg+G i + El+ al++
  KOO24978.1 277 EIDALFNRLDEDGSGWIEYLELKYALSD 304
                 6889**********************94 PP

>> EF-hand_7  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.0   0.2    0.0026       3.8      52      70 ..      41      59 ..      40      60 .. 0.90
   2 !   34.1   1.2   1.8e-11   2.7e-08       3      70 ..      71     132 ..      69     133 .. 0.81
   3 !   34.0   1.5   1.9e-11   2.9e-08       6      70 ..     110     168 ..     105     169 .. 0.93
   4 !   21.4   0.2   1.7e-07   0.00026       3      42 ..     143     177 ..     140     184 .. 0.85
   5 !   38.0   0.1   1.1e-12   1.6e-09       3      70 ..     241     302 ..     240     303 .. 0.89

  Alignments for each domain:
  == domain 1  score: 8.0 bits;  conditional E-value: 0.0026
   EF-hand_7 52 efDtdkdGvisfdEFlkly 70
                 fD ++d +++f EF+++ 
  KOO24978.1 41 AFDANDDKKLDFVEFCAFL 59
                69**************997 PP

  == domain 2  score: 34.1 bits;  conditional E-value: 1.8e-11
   EF-hand_7   3 klkeaFkelDtdgdgyldkeellrllrkifqgagegsklsdee..lellfkefDtdkdGvisfdEFlkly 70 
                 +l+ +F++lD +g+g++d++e   +l++     + ++ ls+ +  + +lf+ +D d++G+++  EF+k++
  KOO24978.1  71 ELRSRFDALDENGNGFIDMDE---YLQW-----SLKDALSRSSsrVVDLFRAWDEDQSGSVDKREFYKAV 132
                 6899*****************...4444.....44444444333399********************997 PP

  == domain 3  score: 34.0 bits;  conditional E-value: 1.9e-11
   EF-hand_7   6 eaFkelDtdgdgyldkeellrllrkifqgagegsklsdeelellfkefDtdkdGvisfdEFlkly 70 
                 + F++ D d++g++dk+e+ ++++        g+++++e  +++f+ +D d++G++ + E+ k+ 
  KOO24978.1 110 DLFRAWDEDQSGSVDKREFYKAVK------ALGFDIRREDTDAVFDSLDEDRSGKLEYAELNKML 168
                 68****************888999......9*****************************99986 PP

  == domain 4  score: 21.4 bits;  conditional E-value: 1.7e-07
   EF-hand_7   3 klkeaFkelDtdgdgyldkeellrllrkifqgagegskls 42 
                 ++  +F++lD d++g+l+++el ++lrk     g gs+ +
  KOO24978.1 143 DTDAVFDSLDEDRSGKLEYAELNKMLRK-----GVGSERT 177
                 56678**********************9.....8888755 PP

  == domain 5  score: 38.0 bits;  conditional E-value: 1.1e-12
   EF-hand_7   3 klkeaFkelDtdgdgyldkeellrllrkifqgagegsklsdeelellfkefDtdkdGvisfdEFlkly 70 
                 kl++ F+e D dg+g +dk e+++++ +       g + ++ e+++lf+ +D d++G i + E++++ 
  KOO24978.1 241 KLMDLFREWDDDGNGAVDKHEFRKAVAA------LGYDAPKSEIDALFNRLDEDGSGWIEYLELKYAL 302
                 89*************************5......555555667********************99975 PP

>> EF-hand_1  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.9   0.0       9.7   1.4e+04      13      19 ..      22      28 ..      22      28 .. 0.88
   2 !   11.4   0.8   0.00013      0.19       8      27 ..      41      60 ..      40      62 .. 0.92
   3 !   17.6   0.2   1.2e-06    0.0019       1      25 [.      71      95 ..      71      98 .. 0.91
   4 !   16.3   0.0   3.3e-06    0.0049       4      29 .]     110     135 ..     107     135 .. 0.91
   5 !   18.1   0.2   8.8e-07    0.0013       3      28 ..     145     170 ..     143     171 .. 0.93
   6 !   22.9   0.1   2.7e-08     4e-05       2      28 ..     242     268 ..     241     269 .. 0.92
   7 !   12.6   0.1     5e-05     0.074       1      27 [.     277     303 ..     277     305 .. 0.93

  Alignments for each domain:
  == domain 1  score: -3.9 bits;  conditional E-value: 9.7
                SSSEEEH CS
   EF-hand_1 13 gdGkIdf 19
                g+G +df
  KOO24978.1 22 GSGEVDF 28
                79*9998 PP

  == domain 2  score: 11.4 bits;  conditional E-value: 0.00013
                HHTTTSSSEEEHHHHHHHHH CS
   EF-hand_1  8 efDkDgdGkIdfeEfkellk 27
                 fD + d k+df Ef+++l+
  KOO24978.1 41 AFDANDDKKLDFVEFCAFLR 60
                69****************98 PP

  == domain 3  score: 17.6 bits;  conditional E-value: 1.2e-06
                HHHHHHHHHTTTSSSEEEHHHHHHH CS
   EF-hand_1  1 elkeiFrefDkDgdGkIdfeEfkel 25
                el+  F+ +D +g+G+Id +E++++
  KOO24978.1 71 ELRSRFDALDENGNGFIDMDEYLQW 95
                68899****************9875 PP

  == domain 4  score: 16.3 bits;  conditional E-value: 3.3e-06
                 HHHHHHTTTSSSEEEHHHHHHHHHHH CS
   EF-hand_1   4 eiFrefDkDgdGkIdfeEfkellkkl 29 
                 ++Fr  D D++G +d+ Ef +++k+l
  KOO24978.1 110 DLFRAWDEDQSGSVDKREFYKAVKAL 135
                 79*******************99975 PP

  == domain 5  score: 18.1 bits;  conditional E-value: 8.8e-07
                 HHHHHHHTTTSSSEEEHHHHHHHHHH CS
   EF-hand_1   3 keiFrefDkDgdGkIdfeEfkellkk 28 
                 + +F+ +D D++Gk+++ E+ ++l+k
  KOO24978.1 145 DAVFDSLDEDRSGKLEYAELNKMLRK 170
                 789*********************97 PP

  == domain 6  score: 22.9 bits;  conditional E-value: 2.7e-08
                 HHHHHHHHTTTSSSEEEHHHHHHHHHH CS
   EF-hand_1   2 lkeiFrefDkDgdGkIdfeEfkellkk 28 
                 l ++Fre D Dg+G +d+ Ef++++++
  KOO24978.1 242 LMDLFREWDDDGNGAVDKHEFRKAVAA 268
                 7899*******************9986 PP

  == domain 7  score: 12.6 bits;  conditional E-value: 5e-05
                 HHHHHHHHHTTTSSSEEEHHHHHHHHH CS
   EF-hand_1   1 elkeiFrefDkDgdGkIdfeEfkellk 27 
                 e++ +F+ +D Dg+G I++ E+k +l+
  KOO24978.1 277 EIDALFNRLDEDGSGWIEYLELKYALS 303
                 799********************9986 PP

>> EF-hand_5  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.7         1   1.5e+03       6      13 ..      40      47 ..      40      55 .. 0.81
   2 !   18.5   0.1   6.8e-07     0.001       2      21 ..      73      92 ..      72      97 .. 0.88
   3 !   15.7   0.0   5.2e-06    0.0078       2      23 ..     109     130 ..     108     133 .. 0.90
   4 !   14.1   0.1   1.6e-05     0.024       2      24 ..     145     167 ..     144     168 .. 0.91
   5 !   15.0   0.2   8.5e-06     0.013       2      23 ..     243     264 ..     242     267 .. 0.89
   6 !    9.9   0.0   0.00034       0.5       1      22 [.     278     299 ..     278     302 .. 0.89

  Alignments for each domain:
  == domain 1  score: -1.1 bits;  conditional E-value: 1
                HHH-SS-S CS
   EF-hand_5  6 qaiDlNgD 13
                +a+D+N D
  KOO24978.1 40 DAFDANDD 47
                589***98 PP

  == domain 2  score: 18.5 bits;  conditional E-value: 6.8e-07
                HHHHHHH-SS-SSCE-HHHH CS
   EF-hand_5  2 kdtFqaiDlNgDGkIskeEL 21
                +  F+a+D Ng G+I+++E 
  KOO24978.1 73 RSRFDALDENGNGFIDMDEY 92
                556****************7 PP

  == domain 3  score: 15.7 bits;  conditional E-value: 5.2e-06
                 HHHHHHH-SS-SSCE-HHHHHH CS
   EF-hand_5   2 kdtFqaiDlNgDGkIskeELkt 23 
                 +d+F+a D +++G ++k E+++
  KOO24978.1 109 VDLFRAWDEDQSGSVDKREFYK 130
                 799*****************98 PP

  == domain 4  score: 14.1 bits;  conditional E-value: 1.6e-05
                 HHHHHHH-SS-SSCE-HHHHHHH CS
   EF-hand_5   2 kdtFqaiDlNgDGkIskeELktl 24 
                 +++F+ +D +++Gk+   EL ++
  KOO24978.1 145 DAVFDSLDEDRSGKLEYAELNKM 167
                 579*****************987 PP

  == domain 5  score: 15.0 bits;  conditional E-value: 8.5e-06
                 HHHHHHH-SS-SSCE-HHHHHH CS
   EF-hand_5   2 kdtFqaiDlNgDGkIskeELkt 23 
                  d+F++ D +g G ++k E+++
  KOO24978.1 243 MDLFREWDDDGNGAVDKHEFRK 264
                 589*****************97 PP

  == domain 6  score: 9.9 bits;  conditional E-value: 0.00034
                 HHHHHHHH-SS-SSCE-HHHHH CS
   EF-hand_5   1 lkdtFqaiDlNgDGkIskeELk 22 
                 ++++F+++D +g+G I   ELk
  KOO24978.1 278 IDALFNRLDEDGSGWIEYLELK 299
                 6789**********99998885 PP

>> EF-hand_8  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.5   1.2    0.0011       1.7      33      54 ..      40      61 ..      40      62 .. 0.92
   2 !    8.0   0.4    0.0017       2.5      27      50 ..      71      94 ..      65      98 .. 0.87
   3 !   14.8   0.0   1.2e-05     0.018      25      53 ..     105     133 ..      96     135 .. 0.85
   4 !   13.3   0.2   3.8e-05     0.057       9      52 ..     127     168 ..     127     171 .. 0.88
   5 !   12.4   0.3   7.3e-05      0.11      29      48 ..     243     262 ..     228     264 .. 0.84
   6 !   30.0   0.0   2.2e-10   3.3e-07       2      45 ..     254     295 ..     253     299 .. 0.92

  Alignments for each domain:
  == domain 1  score: 8.5 bits;  conditional E-value: 0.0011
   EF-hand_8 33 refDtdgdGkisfeEFcvller 54
                ++fD ++d k++f EFc++l +
  KOO24978.1 40 DAFDANDDKKLDFVEFCAFLRD 61
                68*****************987 PP

  == domain 2  score: 8.0 bits;  conditional E-value: 0.0017
   EF-hand_8 27 evdilfrefDtdgdGkisfeEFcv 50
                e+++ f+++D++g+G i+ +E+++
  KOO24978.1 71 ELRSRFDALDENGNGFIDMDEYLQ 94
                667779***************975 PP

  == domain 3  score: 14.8 bits;  conditional E-value: 1.2e-05
   EF-hand_8  25 eeevdilfrefDtdgdGkisfeEFcvlle 53 
                  + v +lfr+ D+d++G +++ EF+  ++
  KOO24978.1 105 SSRVVDLFRAWDEDQSGSVDKREFYKAVK 133
                 566889******************99876 PP

  == domain 4  score: 13.3 bits;  conditional E-value: 3.8e-05
   EF-hand_8   9 elrrilrilglkkglseeevdilfrefDtdgdGkisfeEFcvll 52 
                 e+++++++lg    +  e+ d++f+ +D+d++Gk+ + E   +l
  KOO24978.1 127 EFYKAVKALGFD--IRREDTDAVFDSLDEDRSGKLEYAELNKML 168
                 799999888877..999********************9986666 PP

  == domain 5  score: 12.4 bits;  conditional E-value: 7.3e-05
   EF-hand_8  29 dilfrefDtdgdGkisfeEF 48 
                  +lfre D dg+G++++ EF
  KOO24978.1 243 MDLFREWDDDGNGAVDKHEF 262
                 589****************9 PP

  == domain 6  score: 30.0 bits;  conditional E-value: 2.2e-10
   EF-hand_8   2 kgkItreelrrilrilglkkglseeevdilfrefDtdgdGkisf 45 
                 +g ++++e+r+++++lg+     ++e+d+lf+++D+dg+G i +
  KOO24978.1 254 NGAVDKHEFRKAVAALGYD--APKSEIDALFNRLDEDGSGWIEY 295
                 6899*********999***..*******************8865 PP

>> SPARC_Ca_bdg  Secreted protein acidic and rich in cysteine Ca binding region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.8   0.1      0.39   5.8e+02      98     111 ..      43      56 ..      40      58 .. 0.87
   2 !    7.8   0.0    0.0027       4.1      56     111 ..      72     129 ..      60     131 .. 0.86
   3 ?    1.6   0.0      0.23   3.5e+02      59      81 ..     147     169 ..     137     184 .. 0.84
   4 ?    4.5   0.0     0.028        42      42     105 ..     228     293 ..     200     301 .. 0.72

  Alignments for each domain:
  == domain 1  score: 0.8 bits;  conditional E-value: 0.39
  SPARC_Ca_bdg  98 DadkdkkislkEwc 111
                   Da++dkk++  E+c
    KOO24978.1  43 DANDDKKLDFVEFC 56 
                   999*********99 PP

  == domain 2  score: 7.8 bits;  conditional E-value: 0.0027
  SPARC_Ca_bdg  56 vawkFsklDtnsdkvlsksELa..plraplvklehCikpflescDadkdkkislkEwc 111
                   ++ +F+ lD n +++++  E    +l+  l +  + +  ++++ D d+ ++++++E+ 
    KOO24978.1  72 LRSRFDALDENGNGFIDMDEYLqwSLKDALSRSSSRVVDLFRAWDEDQSGSVDKREFY 129
                   6668***************9752369999***************************97 PP

  == domain 3  score: 1.6 bits;  conditional E-value: 0.23
  SPARC_Ca_bdg  59 kFsklDtnsdkvlsksELaplra 81 
                    F++lD ++ + l+ +EL+++  
    KOO24978.1 147 VFDSLDEDRSGKLEYAELNKMLR 169
                   599***************99855 PP

  == domain 4  score: 4.5 bits;  conditional E-value: 0.028
  SPARC_Ca_bdg  42 kkeeeknlkeckepvawkFsklDtnsdkvlsksELaplrapl..vklehCikpflescDadkdkki 105
                   +++ ++ lk++  ++   F ++D + ++ ++k+E ++  a l  +   + i++++++ D d  + i
    KOO24978.1 228 QEQLRDVLKMHGAKLMDLFREWDDDGNGAVDKHEFRKAVAALgyDAPKSEIDALFNRLDEDGSGWI 293
                   555566677777777788999****99******998877765323444556666666666666555 PP

>> EF-hand_14  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.1   0.0      0.68     1e+03       5      31 ..     111     137 ..     105     144 .. 0.74
   2 !    6.1   0.0    0.0093        14       2      28 ..     144     170 ..     143     184 .. 0.91
   3 ?   -1.0   0.0       1.6   2.4e+03      11      73 ..     251     267 ..     229     271 .. 0.60
   4 ?    5.3   0.0     0.017        26       3      35 ..     279     311 ..     277     318 .. 0.90

  Alignments for each domain:
  == domain 1  score: 0.1 bits;  conditional E-value: 0.68
  EF-hand_14   5 lfdlfkdeetdklsvakllkaLaetGi 31 
                 lf  +++++++++   ++ ka+++ G 
  KOO24978.1 111 LFRAWDEDQSGSVDKREFYKAVKALGF 137
                 466666788888999999999998883 PP

  == domain 2  score: 6.1 bits;  conditional E-value: 0.0093
  EF-hand_14   2 edllfdlfkdeetdklsvakllkaLae 28 
                 +d++fd+++++ ++kl+ a+l k+L++
  KOO24978.1 144 TDAVFDSLDEDRSGKLEYAELNKMLRK 170
                 599*********************985 PP

  == domain 3  score: -1.0 bits;  conditional E-value: 1.6
  EF-hand_14  11 deetdklsvakllkaLaetGirkdDpRLkellkklkkvekekseaeesetleldretFkkcve 73 
                 d++                                              +  +d+ +F+k v+
  KOO24978.1 251 DDG----------------------------------------------NGAVDKHEFRKAVA 267
                 333..............................................44555555555554 PP

  == domain 4  score: 5.3 bits;  conditional E-value: 0.017
  EF-hand_14   3 dllfdlfkdeetdklsvakllkaLaetGirkdD 35 
                 d+lf+ +++++++ ++  +l  aL+++Gi++  
  KOO24978.1 279 DALFNRLDEDGSGWIEYLELKYALSDKGIKQAN 311
                 89***************************9865 PP

>> Armet  Degradation arginine-rich protein for mis-folding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.7   0.0     0.017        26     113     138 ..     110     135 ..      87     140 .. 0.81
   2 !    9.0   0.0   0.00083       1.2     101     137 ..     232     268 ..     222     274 .. 0.88

  Alignments for each domain:
  == domain 1  score: 4.7 bits;  conditional E-value: 0.017
       Armet 113 kiledWgeeCkgCieksdfikrieel 138
                  +++ W+e+ +g ++k++f k ++ l
  KOO24978.1 110 DLFRAWDEDQSGSVDKREFYKAVKAL 135
                 45789****************99876 PP

  == domain 2  score: 9.0 bits;  conditional E-value: 0.00083
       Armet 101 vdlkklkvkeLkkiledWgeeCkgCieksdfikriee 137
                  d+ k++ ++L  ++++W+++ +g ++k++f k +  
  KOO24978.1 232 RDVLKMHGAKLMDLFREWDDDGNGAVDKHEFRKAVAA 268
                 58889**************************988865 PP

>> Caleosin  Caleosin related protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.5   0.0    0.0047         7      13      37 ..     115     139 ..     110     142 .. 0.94
   2 ?    2.6   0.0     0.074   1.1e+02      95     121 ..     144     170 ..     139     175 .. 0.89
   3 ?    2.9   0.0     0.064        95      13      44 ..     249     280 ..     240     294 .. 0.89

  Alignments for each domain:
  == domain 1  score: 6.5 bits;  conditional E-value: 0.0047
    Caleosin  13 fDrdkdGiiypldtyrgfralgfnv 37 
                 +D+d+ G +   + y++++algf++
  KOO24978.1 115 WDEDQSGSVDKREFYKAVKALGFDI 139
                 ***********************87 PP

  == domain 2  score: 2.6 bits;  conditional E-value: 0.074
    Caleosin  95 feeifskyakekkdaltlkevlellkg 121
                  +++f+  +++++++l++ e++++l++
  KOO24978.1 144 TDAVFDSLDEDRSGKLEYAELNKMLRK 170
                 5899********************986 PP

  == domain 3  score: 2.9 bits;  conditional E-value: 0.064
    Caleosin  13 fDrdkdGiiypldtyrgfralgfnvllsllaa 44 
                 +D d +G +  ++  +++ alg+++  s + a
  KOO24978.1 249 WDDDGNGAVDKHEFRKAVAALGYDAPKSEIDA 280
                 9**********************998886655 PP

>> GIT_CC  GIT coiled-coil Rho guanine nucleotide exchange factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.0   0.0    0.0017       2.5      11      37 ..      85     113 ..      79     118 .. 0.86
   2 ?    2.6   0.0     0.082   1.2e+02      17      29 ..     294     306 ..     287     317 .. 0.83

  Alignments for each domain:
  == domain 1  score: 8.0 bits;  conditional E-value: 0.0017
      GIT_CC  11 gpVtleeyle..lKkalaaseakiqqLlk 37 
                 g + ++eyl+  lK al+ s +++  L +
  KOO24978.1  85 GFIDMDEYLQwsLKDALSRSSSRVVDLFR 113
                 7799****8655************99875 PP

  == domain 2  score: 2.6 bits;  conditional E-value: 0.082
      GIT_CC  17 eylelKkalaase 29 
                 eylelK al+  +
  KOO24978.1 294 EYLELKYALSDKG 306
                 8*******98655 PP

>> TERF2_RBM  Telomeric repeat-binding factor 2 Rap1-binding motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.9   0.2    0.0028       4.3      24      35 ..     142     153 ..     139     154 .. 0.91
   2 ?    3.1   0.1     0.041        62      27      35 ..     279     287 ..     275     288 .. 0.91

  Alignments for each domain:
  == domain 1  score: 6.9 bits;  conditional E-value: 0.0028
   TERF2_RBM  24 qDpdAlFtKLDe 35 
                 +D+dA+F  LDe
  KOO24978.1 142 EDTDAVFDSLDE 153
                 9**********9 PP

  == domain 2  score: 3.1 bits;  conditional E-value: 0.041
   TERF2_RBM  27 dAlFtKLDe 35 
                 dAlF+ LDe
  KOO24978.1 279 DALFNRLDE 287
                 9*******9 PP

>> EF-hand_4  Cytoskeletal-regulatory complex EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.7   0.4    0.0091        14      53      70 ..      43      60 ..      38      70 .. 0.89
   2 ?    2.9   0.2     0.071   1.1e+02      45      87 ..     108     151 ..      73     154 .. 0.79
   3 ?   -0.3   0.0      0.67     1e+03      39      68 ..     236     265 ..     214     287 .. 0.71

  Alignments for each domain:
  == domain 1  score: 5.7 bits;  conditional E-value: 0.0091
   EF-hand_4 53 didedgkldfeefciamr 70
                d ++d kldf efc  +r
  KOO24978.1 43 DANDDKKLDFVEFCAFLR 60
                8899**********8876 PP

  == domain 2  score: 2.9 bits;  conditional E-value: 0.071
   EF-hand_4  45 lekiwdladidedgkldfeefciamr.lifdlvngeikdvPsel 87 
                 +  ++   d d+ g++d  ef  a++ l fd+  +++++v ++l
  KOO24978.1 108 VVDLFRAWDEDQSGSVDKREFYKAVKaLGFDIRREDTDAVFDSL 151
                 444555568899*********99987467999999888887766 PP

  == domain 3  score: -0.3 bits;  conditional E-value: 0.67
   EF-hand_4  39 kleedklekiwdladidedgkldfeefcia 68 
                 k++  kl  ++   d d +g +d +ef  a
  KOO24978.1 236 KMHGAKLMDLFREWDDDGNGAVDKHEFRKA 265
                 455667777777778899999999999654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (351 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       403  (0.0224776); expected 358.6 (0.02)
Passed bias filter:                      354  (0.0197445); expected 358.6 (0.02)
Passed Vit filter:                        48  (0.00267723); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.50u 0.28s 00:00:00.78 Elapsed: 00:00:00.44
# Mc/sec: 2382.99
//
Query:       KOO24979.1  [L=419]
Description: hypothetical protein Ctob_006105 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.1e-51  175.2   0.4    1.4e-49  168.3   0.4    2.3  1  LmjF365940-deam  A distinct subfamily of CDD/CDA-like deamina
    0.00059   19.7   0.1     0.0038   17.1   0.1    2.1  1  dCMP_cyt_deam_1  Cytidine and deoxycytidylate deaminase zinc-


Domain annotation for each model (and alignments):
>> LmjF365940-deam  A distinct subfamily of CDD/CDA-like deaminases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  168.3   0.4   1.6e-53   1.4e-49       6     192 ..     254     415 ..     250     416 .. 0.86

  Alignments for each domain:
  == domain 1  score: 168.3 bits;  conditional E-value: 1.6e-53
  LmjF365940-deam   6 avdemkkfranllaaiqek.kelasfwlrktkkpVlavllvekkkaelggdgreelvrgvNlEvSmPtGSlCsErnaigkalasdpslrRrdlk 98 
                      +vdem +++ +++a+  ++ +el++fwlrkt k Vlavll +         g+ ++ rg+N+EvSmPtG lC+Ernaig+ala d s++Rrd+ 
       KOO24979.1 254 LVDEMVQYKRQFEAVRDSNtHELGTFWLRKTGKAVLAVLLTKSP------LGELTFWRGMNVEVSMPTGTLCAERNAIGNALAGDHSVHRRDML 341
                      689************99999*********************988......78999*************************************** PP

  LmjF365940-deam  99 aiAvlslastaagssavpideakedadsagsePtsavRevalhsesqtsarks...nPLkPCGaCeewLkkiaevnpdfkvltFddseckkvyi 189
                      a+Avls+ +                     s P+  v + al+ +  ts+ ++   nPL PCGaC+ewL+kiaevnpdfkvltF++++c+kv+i
       KOO24979.1 342 AVAVLSVTL---------------------SPPKHEVTDQALERT--TSPDDEvalNPLDPCGACMEWLRKIAEVNPDFKVLTFTSTSCEKVFI 412
                      *******11.....................224444333333333..233333344************************************** PP

  LmjF365940-deam 190 kpv 192
                      +p+
       KOO24979.1 413 TPI 415
                      998 PP

>> dCMP_cyt_deam_1  Cytidine and deoxycytidylate deaminase zinc-binding region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   0.1   4.3e-07    0.0038      38      91 ..     304     389 ..     283     394 .. 0.85

  Alignments for each domain:
  == domain 1  score: 17.1 bits;  conditional E-value: 4.3e-07
                      EEEESBHHCCTGTTB-HHHHHHHHHHHHT.SSCE...............................TTEEEEEEE--BHHHHHHHHH CS
  dCMP_cyt_deam_1  38 stgyngepaggsktiHAEvnAilkaakng.gskl...............................egatlyvtlePCsmCakaiiq 91 
                       +g+n e    + t++AE+nAi +a+    +++                                ++ + +  l PC+ C + + +
       KOO24979.1 304 WRGMNVEVSMPTGTLCAERNAIGNALAGDhSVHRrdmlavavlsvtlsppkhevtdqalerttspDDEVALNPLDPCGACMEWLRK 389
                      579999999999**************77324444899999999999999999999999999999888999999*******998876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (419 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       480  (0.0267723); expected 358.6 (0.02)
Passed bias filter:                      459  (0.025601); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.51u 0.26s 00:00:00.77 Elapsed: 00:00:00.42
# Mc/sec: 2962.54
//
Query:       KOO24980.1  [L=520]
Description: hypothetical protein Ctob_006104 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    0.00035   20.7   0.0    0.00081   19.5   0.0    1.7  1  Response_reg  Response regulator receiver domain


Domain annotation for each model (and alignments):
>> Response_reg  Response regulator receiver domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.5   0.0   4.5e-08   0.00081       2     110 ..     279     400 ..     278     402 .. 0.80

  Alignments for each domain:
  == domain 1  score: 19.5 bits;  conditional E-value: 4.5e-08
                   EEESSSHHHHHHHHHHHH......HTTEEEEE.EESSHHHHHHHHHHHH..ESEEEEESSCSS.....SEHHHHHHHHHHCTTTSEEEEEESSTSHH CS
  Response_reg   2 livdDdplvrellrqlle......eegyeeva.eaedgkealellkeek..vdlillDinmpg.....mdGlellkeireedpelpviiltahseee 84 
                     vdDd l+re lr+ +       ++ + + + + +d +++lel+++ +   dli+lD n++       +G  +++++r++  +  + ++t+ s e+
    KOO24980.1 279 YAVDDDALIREMLRETILyklhadSASC-VLGeTSKDCRAVLELACAPAcqADLIILDENLDYppntySKGSCMARQLRQRGFTGVICAFTGGSLEK 374
                   67************98876664423333.4554556777778887555555**********65333445**************************** PP

                   HHHHHHHCTESEEEESSG-HHHHHHH CS
  Response_reg  85 davealkagaddflsKpfdpeeLlka 110
                   +++ a +  +d +l K    +e+++ 
    KOO24980.1 375 QRELAENHSIDRVLNKGQPLQEIVDS 400
                   *****************999999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (520 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       655  (0.036533); expected 358.6 (0.02)
Passed bias filter:                      473  (0.0263818); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.51u 0.23s 00:00:00.74 Elapsed: 00:00:00.38
# Mc/sec: 4105.49
//
Query:       KOO24981.1  [L=380]
Description: tubulin tyrosine ligase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
      1e-92  310.4   0.3    1.4e-92  310.0   0.3    1.0  1  TTL             Tubulin-tyrosine ligase family
    2.4e-07   30.3   0.1    0.00064   19.1   0.0    2.7  2  ATPgrasp_YheCD  YheC/D like ATP-grasp
    7.5e-05   22.1   0.1    0.00085   18.7   0.0    2.1  2  ATPgrasp_ST     Sugar-transfer associated ATP-grasp
  ------ inclusion threshold ------
       0.11   12.0   0.0        0.2   11.1   0.0    1.4  1  Apolipo_F       Apolipoprotein F


Domain annotation for each model (and alignments):
>> TTL  Tubulin-tyrosine ligase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  310.0   0.3   3.1e-96   1.4e-92       4     287 ..      64     353 ..      58     360 .. 0.96

  Alignments for each domain:
  == domain 1  score: 310.0 bits;  conditional E-value: 3.1e-96
                 -TTS-SS-SSS--EEEE--------------------..........-------TTHHHHHHHTTTS--S-B----SS---XX------BSSTHHHHHH CS
         TTL   4 dedkdqllnhfpnsseitrkdllvknlkrtkkklekk........lkflprtfvlpadlaefveeaekeesntwIvKpsasarGkgirvfnkledikki 94 
                 d  ++q++nhf n++e+t+kd l+knlkr + +l+++        ++f+p tfvlpad++ fvee+++++  twI+Kp+ +a+G+gi++fnkl++i ++
  KOO24981.1  64 D--EHQRINHFRNHYELTKKDNLIKNLKRWQRQLQREgreeeakkYDFFPVTFVLPADYGLFVEEFKQQSGATWIMKPAGKAQGRGIFLFNKLSQINDW 160
                 3..39******************************999************************************************************* PP

                 .......HH..SSS-EEEEB--SSB--BTTEEEEEEEEEEE-..TT-XXXXXXXXXXXXXXXXXX..XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
         TTL  95 .......vsqsqkeplvvqkYierPLLidgrKFDlRlyvlvtsvnpLrvYvYkegllRfasvkYspsvsdlddlevHLTNysiqkkskslneesnekkg 186
                            q e +vvq+Yie+PLL++g+KFD+R+yvlvt + pL+vY+Y+ g++Rf+   ++++ ++l+d +vHLTN +iqk+       ++++ g
  KOO24981.1 161 kkdhkwkSDEPQAEIYVVQRYIENPLLVGGKKFDMRIYVLVTAYSPLTVYLYRSGFARFSLYRFETTAKNLSDTYVHLTNAAIQKT----GPAYDKQAG 255
                 ****99866779999***********************************************************************....********* PP

                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX..XXXXXXXXXXXXXXXXXXXX.X CS
         TTL 187 kkwslqelekyleevrkeeiweeiesiiiktilaaeveasrlnvqrlkncfelyGvDilidenlkpwLlEvNasPdlksttkldaelkeeliddvlnlv 285
                 +kwsl++l+ yl  + + e +++++  i++ ++ + + a+++++ ++k+cfe+yG+Di+id++lkpwL+EvNasP+l+++t+ d elk  l+ddv+++ 
  KOO24981.1 256 CKWSLRHLKLYLMGKYGMEATDRLFGEIQDICINS-LLAVQKVMINDKHCFEMYGYDIMIDDTLKPWLIEVNASPSLTADTPQDYELKFGLLDDVFSV- 352
                 ***********************************.************************************************************93. PP

                 XX CS
         TTL 286 vv 287
                  v
  KOO24981.1 353 -V 353
                 .3 PP

>> ATPgrasp_YheCD  YheC/D like ATP-grasp
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.0   0.1   0.00033       1.5      52     130 ..     136     199 ..     124     202 .. 0.75
   2 !   19.1   0.0   1.4e-07   0.00064     202     234 ..     302     335 ..     260     347 .. 0.72

  Alignments for each domain:
  == domain 1  score: 8.0 bits;  conditional E-value: 0.00033
  ATPgrasp_YheCD  52 ylKpanGskGkgilriekeekellllsrekkkkkkkrlaslselesllkkllkkkrylvQqgidl.atidgrpfDfRvlv 130
                     ++Kpa   +G+gi+  +k                 +++++ ++ +++ ++  + + y+vQ +i+    + g+ fD+R+ v
      KOO24981.1 136 IMKPAGKAQGRGIFLFNK----------------LSQINDWKKDHKWKSDEPQAEIYVVQRYIENpLLVGGKKFDMRIYV 199
                     667777777777777777................4566777777778888888888*******751578999*****976 PP

  == domain 2  score: 19.1 bits;  conditional E-value: 1.4e-07
  ATPgrasp_YheCD 202 grlgEl.GlDlgidkegkvWllEvNskpgrsifk 234
                     ++++E+ G D++id++ k Wl+EvN+ p+ ++ +
      KOO24981.1 302 KHCFEMyGYDIMIDDTLKPWLIEVNASPSLTADT 335
                     4556655*********************987665 PP

>> ATPgrasp_ST  Sugar-transfer associated ATP-grasp
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.0   0.0     0.045     2e+02      57      84 ..     129     156 ..     121     198 .. 0.72
   2 !   18.7   0.0   1.9e-07   0.00085     237     273 ..     300     335 ..     283     347 .. 0.83

  Alignments for each domain:
  == domain 1  score: 1.0 bits;  conditional E-value: 0.045
  ATPgrasp_ST  57 keleegvviKpakgsgGkGilvitered 84 
                  ++     ++Kpa    G+Gi   ++ ++
   KOO24981.1 129 QQSGATWIMKPAGKAQGRGIFLFNKLSQ 156
                  444334899***********98876444 PP

  == domain 2  score: 18.7 bits;  conditional E-value: 1.9e-07
  ATPgrasp_ST 237 eklpglgylGwDivldeekgplllElNarpglaivqi 273
                  +  ++  + G Di +d++ +p l+E+Na p+l+  + 
   KOO24981.1 300 NDKHCFEMYGYDIMIDDTLKPWLIEVNASPSLTA-DT 335
                  55678899***********************987.55 PP

>> Apolipo_F  Apolipoprotein F
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   4.5e-05       0.2      35      68 ..     252     285 ..     237     299 .. 0.92

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 4.5e-05
   Apolipo_F  35 eeaGCqaeaeaLqlqLyklgGkdatetLirelqk 68 
                 ++aGC++ ++ L+l L+   G +at+ L  e q+
  KOO24981.1 252 KQAGCKWSLRHLKLYLMGKYGMEATDRLFGEIQD 285
                 579**************************99997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (380 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       652  (0.0363657); expected 358.6 (0.02)
Passed bias filter:                      449  (0.0250432); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.50u 0.23s 00:00:00.73 Elapsed: 00:00:00.41
# Mc/sec: 2784.02
//
Query:       KOO24982.1  [L=232]
Description: hypothetical protein Ctob_006106 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (232 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       648  (0.0361426); expected 358.6 (0.02)
Passed bias filter:                      383  (0.021362); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.41u 0.26s 00:00:00.67 Elapsed: 00:00:00.40
# Mc/sec: 1754.30
//
Query:       KOO24983.1  [L=787]
Description: threonyl-tRNA synthetase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
      9e-37  126.8   0.0    1.5e-36  126.0   0.0    1.3  1  tRNA-synt_2b    tRNA synthetase class II core domain (G, H, P
    3.1e-20   72.1   0.2    5.9e-20   71.2   0.2    1.5  1  HGTP_anticodon  Anticodon binding domain
    1.4e-10   41.1   0.0    3.9e-10   39.7   0.0    1.8  1  tRNA_SAD        Threonyl and Alanyl tRNA synthetase second ad
    7.9e-10   38.6   0.0    2.7e-09   36.9   0.0    2.0  1  TGS             TGS domain


Domain annotation for each model (and alignments):
>> tRNA-synt_2b  tRNA synthetase class II core domain (G, H, P, S and T)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  126.0   0.0   3.4e-40   1.5e-36       7     179 .]     447     662 ..     439     662 .. 0.92

  Alignments for each domain:
  == domain 1  score: 126.0 bits;  conditional E-value: 3.4e-40
                   TSEEEEE-SSSHHHHHHHHHHHEEEBGG.SSEEEEEEEEEEBTTTS.TBCTTTB-SEEEEEEEEEEESGGGHHHHHHHHHHHHHHHHHHTT.SCEEE CS
                   xxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  tRNA-synt_2b   7 ndreyiLkPtneetfvelirdevlrskr.LPlklyqiqtkyRdEks.dsrGLlRvreFhqkdgyvfhaeaslddslrdlikaisriferlglefrai 101
                   +++e+ LkP+n+++++ +++ +  rs+r LP++l++++ ++R+E s ++ GL+Rvr F+q+d+++f++ +++++++++++  is++++++g+  +a+
    KOO24983.1 447 EGQEFGLKPMNCPGHCIMFKHR-KRSYReLPMRLADFGVLHRNELSgALTGLTRVRRFQQDDAHIFCTVDQIKQEVANVLDMISTVYKAFGMT-FAL 541
                   469*****************88.9**888****************99999*****************************************98.668 PP

                   EEEGTTSC.....................................BTTSEEEEEEEEETTTSEEEEEEEEEEEETHHHHHTTE..EEECTTSS.... CS
                   xxxxxxxx.....................................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxx.... RF
  tRNA-synt_2b 102 ielmsaks.....................................adykdkkefeavsesltkgieigtiqklgtrlserlga..tvldennr.... 155
                   +++++ +s                                     a+y++k ++++ +  ++++++++t+q + + ++ r+++  +++ e+++    
    KOO24983.1 542 KLSTKPESalgdpatwvkaesmmeealneysaktgqpwtlnpgdgAFYGPKIDVQVFDA-IKRAHQCATVQLD-FVQPTRFDLkyQAKPEEGSdatv 636
                   8888888899999*********************************************9.9************.*********55555555533333 PP

                   EEEEEEEEEE.EE.HHHHHHHHHHHH CS
                   xxxxxxxxxx.xx.xxxxxxxxxxxx RF
  tRNA-synt_2b 156 eksvimicaa.ig.veRllsaileqn 179
                   e++++m+++a +g veR++++++e++
    KOO24983.1 637 EERPVMVHRAvLGsVERMIAILIEHY 662
                   7899*******************986 PP

>> HGTP_anticodon  Anticodon binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   71.2   0.2   1.3e-23   5.9e-20       1      93 [.     674     763 ..     674     764 .. 0.98

  Alignments for each domain:
  == domain 1  score: 71.2 bits;  conditional E-value: 1.3e-23
                     SEEEEESSSSHHHHHHHHHHHHHHHHTTTSEEEEESSSSTHHHHHHHHHHTT-SEEEEE-HHHHHHTEEEEEETTTCEEEEEETTHHHHHHHH CS
  HGTP_anticodon   1 qvvviplnekaeeleeyakklaeeLraagirvelddsnesigkkireadllgipfavvvGekelekgtvtvrdrdtreqervsldelveklke 93 
                     q++++p++     +e+ya++++++ r ag+ v++d s++++ k +rea+ +++++++vvG++e+ekgtv++r+rd+  q + +++el++++++
      KOO24983.1 674 QAMILPVSP---VFEPYAQEVQKQVRLAGFFVDVDLSHRTLPKMVREAQVAQYNYILVVGKEEMEKGTVNIRTRDNVVQGSKTIAELLAEFEK 763
                     899******...9**************************************************************************999876 PP

>> tRNA_SAD  Threonyl and Alanyl tRNA synthetase second additional domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.7   0.0   8.7e-14   3.9e-10       2      43 ..     295     342 ..     294     343 .. 0.78

  Alignments for each domain:
  == domain 1  score: 39.7 bits;  conditional E-value: 8.7e-14
                 EEEEETT.EEEEESS---SBGGGC-SEEEE.......CCECCCTCEEEE CS
    tRNA_SAD   2 rvvsiGdisvelCgGtHvpnTgeIgafkil.......seesiakglrRI 43 
                 +v+++G  +++lC+G+H+pnT  ++afk +        ++  ++ l+R+
  KOO24983.1 295 TVYRCGP-FIDLCRGPHLPNTDRVKAFKCIkassalwLGKVGNDDLQRV 342
                 8*****8.**********************5555555555555555555 PP

>> TGS  TGS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.9   0.0   6.1e-13   2.7e-09       2      59 ..      98     186 ..      97     187 .. 0.95

  Alignments for each domain:
  == domain 1  score: 36.9 bits;  conditional E-value: 6.1e-13
                 EEEETTSSEEEEETTB-.HHHHHHHHSTTHHHHEEEEEECS..............................EEEETTSBB-SSEEEEEE CS
         TGS   2 rvytPdGkvpdlprgat.veDfAykIhrslakkfiyAlVnG..............................qrvgldhvLedgdvveIv 59 
                  v++PdGk++d + ++t + D+A  I+++la+++++A V                                ++++l ++Le ++ +++ 
  KOO24983.1  98 VVTLPDGKQVDATAWETsPLDVATGISKGLAQACCVASVRYtrrikgadqgiieiaagpdgedaasfseafELWDLGRPLEGDCDLKLH 186
                 5677***********************************99999***************************************999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (787 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       568  (0.0316805); expected 358.6 (0.02)
Passed bias filter:                      514  (0.0286686); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.63u 0.29s 00:00:00.92 Elapsed: 00:00:00.44
# Mc/sec: 5317.90
//
Query:       KOO24984.1  [L=159]
Description: hypothetical protein Ctob_011683 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (159 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       737  (0.0411066); expected 358.6 (0.02)
Passed bias filter:                      400  (0.0223102); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.39u 0.25s 00:00:00.64 Elapsed: 00:00:00.40
# Mc/sec: 1189.31
//
Query:       KOO24985.1  [L=921]
Description: pas domain s-box [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.3e-25   89.3   0.0      7e-25   87.7   0.0    1.8  2  HATPase_c     Histidine kinase-, DNA gyrase B-, and HSP90-lik
    8.9e-18   64.5   0.0    2.6e-09   37.3   0.0    2.9  3  Response_reg  Response regulator receiver domain
    1.3e-14   53.9   0.6    4.5e-14   52.2   0.0    2.2  2  HisKA         His Kinase A (phospho-acceptor) domain
    3.5e-11   43.1   0.4    0.00013   21.9   0.0    2.5  2  PAS           PAS fold
    1.4e-07   31.7   0.1    0.00033   20.9   0.1    2.7  2  PAS_4         PAS fold
    1.5e-06   28.8   0.0    2.2e-05   25.1   0.0    2.6  2  GAF           GAF domain
    8.7e-06   25.9   1.0    3.1e-05   24.1   1.0    2.0  1  Hpt           Hpt domain
     0.0063   16.7   0.0      0.023   15.0   0.0    1.9  1  PAS_9         PAS domain
     0.0075   16.3   0.1      0.058   13.4   0.0    2.4  2  PAS_8         PAS domain


Domain annotation for each model (and alignments):
>> HATPase_c  Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.0       7.2   1.4e+04      60      79 ..     209     233 ..     193     254 .. 0.63
   2 !   87.7   0.0   3.5e-28     7e-25       1     110 [.     448     595 ..     448     597 .. 0.82

  Alignments for each domain:
  == domain 1  score: -3.5 bits;  conditional E-value: 7.2
                 TTCH.....HCSTCHTSTSSSHHHH CS
   HATPase_c  60 kfsq.....ddstkrggggtGlGls 79 
                  f +     ++s++r+++++G +ls
  KOO24985.1 209 TFEEgddesNSSRNRNSSRSGSSLS 233
                 5555555444555566666665554 PP

  == domain 2  score: 87.7 bits;  conditional E-value: 3.5e-28
                 EHHHHHHHHHHHHHHHHHHHHSTTTEEEEEEEE.......................EE...............TEEEEEEEESSSSSTTHHHTGTCSTT CS
   HATPase_c   1 gdekrLrqiisnlvdNavkfatkageieveika.......................se...............ddlvisveDnGiGipkedlkklfekf 61 
                 gd++r++q++ nl+ Na+kf t++g+++++ +                        ++               ++l +++ D+G Gi++ed+  +fe+f
  KOO24985.1 448 GDSIRVQQVLLNLLWNALKF-TPQGHVRLSARCttcaspscsfeksstssaplsaeDDspasppraaggeadvVHLIFEIADSGVGISPEDQTVIFERF 545
                 79******************.99999999555555555555555554444444444113444555666677889************************* PP

                 CH.HCSTCHTSTSSSHHHHHHHHHHHHTTTEEEEEEETTTEEEEEEEEES CS
   HATPase_c  62 sq.ddstkrggggtGlGlsivkklvelmgGeiwvesepgrGttftftlpl 110
                  +  +s++ + +g+GlG+si+k+lvelmgG+iw++se g+G+++ ++l l
  KOO24985.1 546 ARtHRSSAPENSGVGLGMSICKQLVELMGGRIWLHSELGKGSRVFVQLAL 595
                 **99999999*********************************9988765 PP

>> Response_reg  Response regulator receiver domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.2   0.0         9   1.8e+04       5      30 ..     302     327 ..     294     331 .. 0.58
   2 !   37.3   0.0   1.3e-12   2.6e-09       1      69 [.     642     721 ..     642     727 .. 0.88
   3 !   24.0   0.0   1.7e-08   3.3e-05      69     109 ..     752     792 ..     743     795 .. 0.88

  Alignments for each domain:
  == domain 1  score: -4.2 bits;  conditional E-value: 9
                   SSSHHHHHHHHHHHHHTTEEEEEEES CS
  Response_reg   5 dDdplvrellrqlleeegyeevaeae 30 
                   +D  + r+ l+  +++++++++ ea+
    KOO24985.1 302 EDVAMRRRMLEATMQNHELKRTNEAK 327
                   45555555566666666665555555 PP

  == domain 2  score: 37.3 bits;  conditional E-value: 1.3e-12
                   EEEESSSHHHHHHHHHHHHHTTEEEEEEESSHHHHHHHH.....HHHH.........ESEEEEESSCSSSEHHHHHHHHHHCT CS
  Response_reg   1 vlivdDdplvrellrqlleeegyeevaeaedgkealell.....keek.........vdlillDinmpgmdGlellkeireed 69 
                   vliv+D+  ++++ +q+le  g  +v++a dg ea+ l+     k  +         +dl+l+D++mp m+G+++++ +r+ +
    KOO24985.1 642 VLIVEDNDYNVDVAKQMLELLGH-RVTVAFDGWEAVSLIisrdcK--RawlptsgkpFDLVLMDCDMPVMNGFQAARALRAWE 721
                   8**********************.***************666542..1467777788**********************9876 PP

  == domain 3  score: 24.0 bits;  conditional E-value: 1.7e-08
                   TTTSEEEEEESSTSHHHHHHHHHCTESEEEESSG-HHHHHH CS
  Response_reg  69 dpelpviiltahseeedavealkagaddflsKpfdpeeLlk 109
                    p lp+i++ta++ ++d+ ++++ag+dd+++Kp++   L++
    KOO24985.1 752 RPALPIIAVTAYAMSTDKDACFEAGMDDYITKPLSWPVLRD 792
                   4789*****************************98777765 PP

>> HisKA  His Kinase A (phospho-acceptor) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.2   0.0   2.3e-17   4.5e-14       2      67 .]     327     397 ..     326     397 .. 0.94
   2 ?   -1.9   0.1       1.8   3.5e+03      33      49 ..     888     904 ..     866     912 .. 0.72

  Alignments for each domain:
  == domain 1  score: 52.2 bits;  conditional E-value: 2.3e-17
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHC.......T-HSSCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH CS
       HisKA   2 lgrflagvaHELrtPLsailgnaeaLkre.....gklteelkeyletiesearrldhlvedlLdlsrieag 67 
                 +  fla ++HE+rtPL+++lg++++ + +     + l+++++++l+++ ++++ l++l++d+Ld++rieag
  KOO24985.1 327 KDAFLACMSHEMRTPLNGLLGMLQLAMGSsgqgeAGLPDKVRRFLKQALNSGNLLLNLINDILDITRIEAG 397
                 788**********************866668999999********************************97 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 1.8
                 -HSSCHHHHHHHHHHHH CS
       HisKA  33 lteelkeyletiesear 49 
                 l ee++++l+++++e +
  KOO24985.1 888 LFEEVRDALRDMQRELE 904
                 55788888888888776 PP

>> PAS  PAS fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.9   0.0   6.8e-08   0.00013       3      46 ..     160     203 ..     158     215 .. 0.93
   2 !   19.0   0.1   5.5e-07    0.0011      64     113 .]     255     304 ..     246     304 .. 0.76

  Alignments for each domain:
  == domain 1  score: 21.9 bits;  conditional E-value: 6.8e-08
                 HHHHHHHSSSEEEEEETTSBEEEECHHHHHHHSSTHHHCTTSBG CS
         PAS   3 lraileslpdpifvvDedgrilyvNaaaeellGlsreevlgksl 46 
                 l ++++++ +pif+vD+  r++ +N+++ e++ ++r e+ g+ +
  KOO24985.1 160 LTSLIDTANAPIFAVDAAMRVTAWNRKISEITSIERREIEGQDI 203
                 6689***********************************99987 PP

  == domain 2  score: 19.0 bits;  conditional E-value: 5.5e-07
                 HHHHHTT-.ECCCCEEEECTTSSEEEEEEEEEEEEETTEEEEEEEEEEEES CS
         PAS  64 qlleqgee.srageisfklrdgrpihlevraspvrdaggeilgflgvlrdi 113
                 q+l+  ++ + ++e++ k+ + r i+l++ + p rd++g++ g+++v+ d+
  KOO24985.1 255 QALAGERCaCFDFEMRSKV-HARRIQLQISVEPKRDPDGRVVGVVCVGEDV 304
                 4444433313456666666.****************************997 PP

>> PAS_4  PAS fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.0   0.0    0.0016       3.2       2      38 ..     165     201 ..     164     203 .. 0.91
   2 !   20.9   0.1   1.7e-07   0.00033      49     110 .]     246     309 ..     231     309 .. 0.91

  Alignments for each domain:
  == domain 1  score: 8.0 bits;  conditional E-value: 0.0016
       PAS_4   2 dslpdalavldpdgrvlyaNaaaaelfgappeellGk 38 
                 d  +++++++d+ +rv+++N+ + e+  +++ e+ G+
  KOO24985.1 165 DTANAPIFAVDAAMRVTAWNRKISEITSIERREIEGQ 201
                 56789*********************99999999986 PP

  == domain 2  score: 20.9 bits;  conditional E-value: 1.7e-07
       PAS_4  49 aarleralrrvlegeepiefleelll..pgeerhyelrllPlrdesGevigvlvisrDiTerrr 110
                  a+++r lr++l+ge+ + f  e++     ++  +++++ P rd++G+v+gv++++ D+  rrr
  KOO24985.1 246 EAPIRRVLRQALAGERCACFDFEMRSkvHARRIQLQISVEPKRDPDGRVVGVVCVGEDVAMRRR 309
                 5789999********999999999999999999999*************************997 PP

>> GAF  GAF domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.1   0.0   1.1e-08   2.2e-05      59     129 ..      50     126 ..      12     130 .. 0.82
   2 ?    0.3   0.0      0.51     1e+03      88     108 ..     279     301 ..     217     321 .. 0.63

  Alignments for each domain:
  == domain 1  score: 25.1 bits;  conditional E-value: 1.1e-08
                 SSSEEESTGGTSTTHHTTHHHHHHHHTTESEEEEEEEEE......TTEEEEEEEEEESSS..CSHHHHHHHHHHHHHHH CS
         GAF  59 gqplvipdstpdprfaqynrrdllenmgirsslvvPlvn......dgelwGllvlhnpsp..pftreelellqvladqv 129
                 +++  +pd+t dprf+q  ++ + + ++ir ++++Plv+      + + +G+l++++++p  p + e++e l+ la++v
  KOO24985.1  50 PEIFEVPDATLDPRFSQ--NPLVTGDPNIRYYAGAPLVVnispdtGPQKMGTLCVIDTTPrpPMDAEDRETLTILAAMV 126
                 56777889*********..9******************77888887778********55555*************9987 PP

  == domain 2  score: 0.3 bits;  conditional E-value: 0.51
                 S.EEEEEEEEE.TTEEEEEEEEE CS
         GAF  88 r.sslvvPlvn.dgelwGllvlh 108
                 +    v P ++ dg+++G++++ 
  KOO24985.1 279 QlQISVEPKRDpDGRVVGVVCVG 301
                 33334444455566666666665 PP

>> Hpt  Hpt domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.1   1.0   1.6e-08   3.1e-05      14      82 ..     831     899 ..     818     917 .. 0.78

  Alignments for each domain:
  == domain 1  score: 24.1 bits;  conditional E-value: 1.6e-08
                 HHHHHHHHSCCHHHHHHHHHHHHHHHHHHTTBHHHHHHHHHHHHHHHHCTSCHHHHHHHHHHHHHHHHH CS
         Hpt  14 leqleqaldqedlqelaraaHtLKGsagmlGltelaelahelEdlldragelelepellealkalleal 82 
                 +e+l+  ++q++++ l ++aH+LKG+ +++ + e +++a++lE+  ++    + ++ l+e+++++l ++
  KOO24985.1 831 FERLRGPWEQRNFKRLGELAHQLKGTTSYICAGEAMRAAARLEQSAKALAAADTSEFLFEEVRDALRDM 899
                 56777778999*********************************4443333333333333555555544 PP

>> PAS_9  PAS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.0   1.1e-05     0.023       4     102 ..     171     304 ..     168     305 .. 0.84

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 1.1e-05
       PAS_9   4 ilidnpdgrilyaNeaalrllGyspeevlgksitdlf.....vtdpeanerlraaleqgrk...............................kerevev 66 
                 i+ ++   r++ +N++  +++   ++e+ g++i  l       +d+++ +r r+  ++g++                                ++++e+
  KOO24985.1 171 IFAVDAAMRVTAWNRKISEITSIERREIEGQDICLLEgtfeeGDDESNSSRNRNSSRSGSSlsrsgsslsfgtmleapirrvlrqalagercACFDFEM 269
                 55555677899*******************99766668889877777777888888888889999999999999999999******9988777777777 PP

       PAS_9  67 vlirkngetfwvlltaspvkdddgelvgiivilrDi 102
                       + ++  ++++ p +d dg++vg++++ +D+
  KOO24985.1 270 RSKVHAR-RIQLQISVEPKRDPDGRVVGVVCVGEDV 304
                 7777755.8889**********************98 PP

>> PAS_8  PAS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.4   0.0   2.9e-05     0.058       3      57 ..     160     211 ..     158     222 .. 0.74
   2 ?   -0.9   0.0      0.92   1.8e+03      20      37 ..     649     665 ..     640     688 .. 0.72

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 2.9e-05
       PAS_8   3 lralfesspdgiavvdlgdrivdvNqaalellGys.adlkgellgqllpvlrplle 57 
                 l +l+++++ +i+ vd+  r++ +N++  e++  +  ++ g    q+++ l++ +e
  KOO24985.1 160 LTSLIDTANAPIFAVDAAMRVTAWNRKISEITSIErREIEG----QDICLLEGTFE 211
                 679*************5568************855555555....55555554444 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 0.92
       PAS_8  20 gdrivdvNqaalellGys 37 
                 +   vdv +++lellG +
  KOO24985.1 649 DY-NVDVAKQMLELLGHR 665
                 44.5778899******55 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (921 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       526  (0.0293379); expected 358.6 (0.02)
Passed bias filter:                      433  (0.0241508); expected 358.6 (0.02)
Passed Vit filter:                        52  (0.00290033); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.67u 0.27s 00:00:00.94 Elapsed: 00:00:00.43
# Mc/sec: 6468.67
//
Query:       KOO24986.1  [L=111]
Description: hypothetical protein Ctob_011680 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (111 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       736  (0.0410508); expected 358.6 (0.02)
Passed bias filter:                      376  (0.0209716); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.23s 00:00:00.57 Elapsed: 00:00:00.36
# Mc/sec: 925.71
//
Query:       KOO24987.1  [L=442]
Description: putative glucuronoxylan glucuronosyltransferase irx7-like protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    7.3e-44  150.2   0.0    9.5e-44  149.8   0.0    1.1  1  Exostosin  Exostosin family


Domain annotation for each model (and alignments):
>> Exostosin  Exostosin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  149.8   0.0   5.3e-48   9.5e-44       2     298 ..      14     334 ..      13     336 .. 0.86

  Alignments for each domain:
  == domain 1  score: 149.8 bits;  conditional E-value: 5.3e-48
   Exostosin   2 kkglkVYvydlpskfnedlleecrelp...etswysaeqfllesllhsrveeyvrtsdpaeAdlffvpfyaslsenrhllnsalqdrre..lqrellew 95 
                 +k+lk++vy lp++fn  l ++ r+     ++ +ys +  l+  ll s+    +rt dpaeAd+ffvp+y sl +  ++++    + r   + re++++
  KOO24987.1  14 SKQLKIFVYHLPPRFNVWLAAHFRRTGrwdQSYLYSLDAKLHRWLLRSP----YRTLDPAEADYFFVPAYPSLGFYDYEFGLYWLAGRGhlFLREAMDY 108
                 589*************777766666624444455555555555555555....************************99998766555578******** PP

   Exostosin  96 lksqlpyWnrsgGrdHfivlsrptwafrr..takdvdwgsamlvnltslfseeqyrpgkdvvv.Pypspfhp..........eisqwqaaspsnrRktl 181
                 ++   p++n+s G++H++v++ + +a+++  + ++ +  ++++    +++     r g dvvv P+++  +           +  +  + + s+   +l
  KOO24987.1 109 VRMTHPWFNQSRGANHLLVMTNDKGATFIrgSVPQLENVNLITQ--WGWVRPHIHRRGTDVVVpPMLKVDKLigespfmgreDKLTAYMGASSSGYAYL 205
                 *****************************999999999999999..9****************777766666999999999888889999999999*** PP

   Exostosin 182 lvFagel..rrrsesgkireklleeckgdpdadickgkqctk..grsked.....ylellassrFClvppGdsptsrrlfdallagCIPVii......s 265
                 l+F g +  + +++s+ +r+k+++++++++++   + +  ++   r+        yl++l++s+FCl p G  +++ r ++++++gC+P ii      +
  KOO24987.1 206 LSFVGSVrfHTPGYSMGVRQKIFRRYNQTERFFLRDLRGDSYkgPRK--AldpreYLRVLQQSKFCLAPSGMGFST-RSYESMAQGCVPLIIqddpdsN 301
                 ******9999****************888888888877777764222..245788******************665.8**************7777766 PP

   Exostosin 266 dqielPfedvldwrefsvfvpekdvpelksilr 298
                   +   fe++l w++fs++++++d+p+l ++l+
  KOO24987.1 302 TTVDQAFEEILPWTKFSLRLKQTDIPNLPKLLA 334
                 67999**********************999985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (442 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       249  (0.0138881); expected 358.6 (0.02)
Passed bias filter:                      227  (0.0126611); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.24s 00:00:00.68 Elapsed: 00:00:00.38
# Mc/sec: 3522.12
//
Query:       KOO24988.1  [L=198]
Description: intraflagellar transport protein 46-like isoform 1, partial [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.3e-29  103.5   0.3    1.6e-29  103.2   0.3    1.1  1  IFT46_B_C  Intraflagellar transport complex B protein 46 C te


Domain annotation for each model (and alignments):
>> IFT46_B_C  Intraflagellar transport complex B protein 46 C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  103.2   0.3     9e-34   1.6e-29       2      67 ..     133     198 .]     132     198 .] 0.99

  Alignments for each domain:
  == domain 1  score: 103.2 bits;  conditional E-value: 9e-34
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
   IFT46_B_C   2 ydpkdyenlevsaeikelfeyitrYtpqeieldtkLkpFipdyiPavGdiDaflKvprpdekedkL 67 
                 ydp++y+nl+vsaeikelf+ itrY++++iel+t+++pFipdyiPavGdiD f+K+prpd+k+d+L
  KOO24988.1 133 YDPAKYANLPVSAEIKELFQHITRYKAHNIELETRMRPFIPDYIPAVGDIDPFIKIPRPDGKTDNL 198
                 9**************************************************************997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (198 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       373  (0.0208043); expected 358.6 (0.02)
Passed bias filter:                      301  (0.0167884); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.21s 00:00:00.57 Elapsed: 00:00:00.35
# Mc/sec: 1684.63
//
Query:       KOO24989.1  [L=1901]
Description: ATP-binding cassette sub-family a member 12, partial [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    9.2e-57  192.7  53.8    3.5e-30  105.3  26.0    3.1  3  ABC2_membrane_3  ABC-2 family transporter protein
    8.6e-51  172.1   0.0    2.2e-24   86.5   0.0    2.4  2  ABC_tran         ABC transporter
    4.8e-18   66.0   0.3    1.2e-08   35.2   0.0    4.4  4  AAA_21           AAA domain, putative AbiEii toxin, Type IV T
    8.4e-05   22.7   0.1       0.23   11.7   0.0    4.1  3  SbcCD_C          Putative exonuclease SbcCD, C subunit
    0.00053   19.5   0.0       0.75    9.2   0.0    3.4  4  SMC_N            RecF/RecN/SMC N terminal domain
    0.00086   18.8  12.9    0.00086   18.8  12.9    3.3  2  ABC2_membrane    ABC-2 type transporter
     0.0035   17.1   2.6       0.41   10.4   0.4    2.8  2  AAA_29           P-loop containing region of AAA domain
  ------ inclusion threshold ------
      0.011   15.5   4.2       0.19   11.5   0.8    2.3  2  MukB             MukB N-terminal
      0.021   15.5   0.0        2.1    9.2   0.0    2.9  2  DUF4162          Domain of unknown function (DUF4162)
      0.022   13.8   2.2       0.28   10.1   0.1    2.3  2  MeaB             Methylmalonyl Co-A mutase-associated GTPase 
      0.043   13.2   0.5          2    7.8   0.1    3.2  4  Mg_chelatase     Magnesium chelatase, subunit ChlI
      0.054   14.0   3.9        2.5    8.5   0.4    2.4  2  AAA_23           AAA domain
      0.063   12.5   0.1        2.8    7.1   0.0    2.8  3  Zeta_toxin       Zeta toxin
       0.29   10.7   3.7        4.5    6.9   0.9    2.3  2  SRP54            SRP54-type protein, GTPase domain
       0.36   10.9   1.9        9.6    6.3   0.1    2.4  2  MMR_HSR1         50S ribosome-binding GTPase


Domain annotation for each model (and alignments):
>> ABC2_membrane_3  ABC-2 family transporter protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.7   0.1         4   4.8e+03       6      33 ..      80     108 ..      80     132 .. 0.72
   2 !   95.8  15.4   2.2e-30   2.7e-27     115     345 .]     333     576 ..     288     576 .. 0.86
   3 !  105.3  26.0   2.9e-33   3.5e-30      99     344 ..    1225    1495 ..    1091    1496 .. 0.75

  Alignments for each domain:
  == domain 1  score: -3.7 bits;  conditional E-value: 4
  ABC2_membrane_3   6 itlllPiilvlllglifsnsve..ddentp 33 
                      ++++lP +l+ l +li  n+++  + +nt 
       KOO24989.1  80 CEIVLPALLCML-VLIGANASTidTFPNTE 108
                      789999999975.66666666554455554 PP

  == domain 2  score: 95.8 bits;  conditional E-value: 2.2e-30
  ABC2_membrane_3 115 ailnalns.llqqlnasalvlqseatstsaninvestql.eeelsnvasflvgliliilifitasfiavsiveEkesrikelqlvsgvsplqyw 206
                      ++++aln+  l+q ++++      ++  +  +++   ++  +   n+a  l+gl+++++++i++s +++++v Ekes+++e++l++g +  +y+
       KOO24989.1 333 SLQSALNQhTLSQHTTNQ------TAPLAVGVPFPVPAYvHNTFFNFAGNLIGLVVVFSFLIPISTMLRALVLEKESKLREQLLTMGATLPAYY 420
                      567777776666666544......44444444444444458888899999******************************************** PP

  ABC2_membrane_3 207 lskilgdflvyllqlllilllafglgipfgnlglllllfllfglayialgyllsslfknsetaqilifivilllsgffgglfp....ledlpsa 296
                       s ++++++ y++++l++ +++f + +++++  l++ lf+lf+la++a++++ls +fkn++ a ++ +++++ +s  f++ f+    l++  ++
       KOO24989.1 421 GSVLTTYGASYFITALVCAAIIFPSCYTYSDPTLVVALFVLFALATLAFTLALSPFFKNARLAALAGPLLFF-ISSQFYNAFLdkgvLSQGQDG 513
                      ***********************9999999*********************************998888888.899999998888889****** PP

  ABC2_membrane_3 297 lkwifsiiPffapglgllrlitgdplwe...............illsliilalfavvylllall 345
                      +kw+ si+P+ a+ lg   +++++ +++               +++s+++l+ ++ ++ll+a++
       KOO24989.1 514 AKWAVSIFPSMAFYLGASLMAQYE-GSQqglswaevfhgdgfgVGQSILMLIFDVGFWLLVAWY 576
                      *****************8888655.444577777899999999******************996 PP

  == domain 3  score: 105.3 bits;  conditional E-value: 2.9e-33
  ABC2_membrane_3   99 atvtvlinssnlnsskailnalns.llqqlnasalvlqseatstsaninvestqleeelsnvasflvgliliilifitasfiavsiveEkes 189 
                         +++l+ns+ ++s +a+ n+l++ l q  ++sa     +++ ++++++v + q++   +++ s +++++++i++ ++a++++v +v+E+es
       KOO24989.1 1225 GVASLLFNSTATLSPPALVNTLYDtLVQLATGSA----VSIAGSMQSLPVSD-QTKATFDSFISLFASIMILIPFAFVAAQFVVPLVRERES 1311
                       4567889**************9998999988877....45666666666654.557777888888888888888888888888899****** PP

  ABC2_membrane_3  190 rikelqlvsgvsplqywlskilgdflvyllqlllill.lafgl..gipfg..nlglllllfllfglayialgyllsslfknsetaqilifiv 276 
                       + k++q++sgv p  ywls+  +d+l++l++++ +l+ ++++   +++ +   +g + ll+l fg a+++l+ + s+ f++++++ i+++++
       KOO24989.1 1312 GSKQMQFISGVGPVIYWLSNWAWDALMFLIIAASTLVvFVIQNrsEFTGTteAFGGTTLLLLTFGVAVVPLSSAASFGFTTPSNGLIVMIAF 1403
                       *********************************9999568888776666677889999********************************** PP

  ABC2_membrane_3  277 illlsgffggl..fpledlp.......salkwifsiiPffapglgllrli.................tgdplweillsliilalfavvylll 342 
                        + lsgf +++  f+l++++       ++l+++ +++P +++g+g+++++                  +d + +++ ++++l+l+++ ++++
       KOO24989.1 1404 HF-LSGFGLNVcdFILQSIStetqkinDGLRYLYRLFPAYCLGQGFFSMStrqlvanfaafgqpqpkLYD-WDQLGAPITYLFLEGLGFMAI 1493
                       **.999999999988777666666666***********************77777666666666555444.55599***************9 PP

  ABC2_membrane_3  343 al 344 
                       +l
       KOO24989.1 1494 TL 1495
                       87 PP

>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   86.5   0.0   1.9e-27   2.2e-24       2     137 .]     668     811 ..     667     811 .. 0.90
   2 !   83.4   0.0   1.7e-26   2.1e-23       3     136 ..    1603    1744 ..    1601    1745 .. 0.96

  Alignments for each domain:
  == domain 1  score: 86.5 bits;  conditional E-value: 1.9e-27
                 EEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGGB-HHHCCHCEEEE-SS--S-TTSBHHHH.............HHHTCHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.............xxxxxxxx RF
    ABC_tran   2 knvslklkegekvaivGenGaGKStLlkllagllkpteGeilldgkdlkeqeleslrkeigvlpqepqlfpeltvren.............esdeeiek 87 
                 + ++l++ +g++++++G nGaGK+t +++l+gl  pt+G+ ++dg ++++ +++  r ++gv++q +++f  lt  ++                  ie+
  KOO24989.1 668 HPMDLEMAPGQVTGLLGANGAGKTTTISMLTGLIPPTSGTATIDGLSIRT-QMRAIRLSLGVCTQLNTIFGPLTPVQHlelygrlkglsgtRLATAIEQ 765
                 56899********************************************9.999********************5555599999999776666666888 PP

                 HHHHSTTGGTTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  88 alsklglkelkdtvvksspssLSgGqkqrvalarallkkpkllllDEpta 137
                 +l+ + l+e++ t +     +LSgGqk++++la +l+ +++ ++lDEpt+
  KOO24989.1 766 LLTYVMLQEKRLTAA----CNLSGGQKRKLCLAISLIGNARTVFLDEPTS 811
                 888888888666666....*****************************96 PP

  == domain 2  score: 83.4 bits;  conditional E-value: 1.7e-26
                  EEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGGB-HHHCCHCEEEE-SS--S-TTSBHHHH.............HHHTCHH CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.............xxxxxxx RF
    ABC_tran    3 nvslklkegekvaivGenGaGKStLlkllagllkpteGeilldgkdlkeqeleslrkeigvlpqepqlfpeltvren.............esdeeie 86  
                  ++ l + +ge+ +++G nGaGKSt +++l+g l pt+G+ ll+g ++ + e ++ r+ +g++pq++ l   +t+re                ++e+e
  KOO24989.1 1603 DLCLRIGRGECFGFLGVNGAGKSTTFSMLTGSLVPTSGDALLEGMSILH-EQNKIRRLVGYCPQHDALEALMTAREAlrmyakikdvapgSIEAEVE 1698
                  6678999******************************************.99999****************************999999999999** PP

                  HHHHHSTTGGTTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTT CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran   87 kalsklglkelkdtvvksspssLSgGqkqrvalarallkkpkllllDEpt 136 
                  ++++ l+l++++d+++     ++SgG k+++++  al+  p+l++lDEp+
  KOO24989.1 1699 DLIQDLDLSKFADKPC----GTYSGGNKRKLCVGIALVGSPQLVMLDEPS 1744
                  ****************....*****************************7 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.5   0.2   0.00033      0.39       1      42 [.     679     707 ..     679     722 .. 0.73
   2 !   35.2   0.0   9.8e-12   1.2e-08     236     297 ..     782     839 ..     773     840 .. 0.95
   3 ?    2.1   0.1      0.12   1.4e+02       3      19 ..    1615    1631 ..    1613    1656 .. 0.87
   4 !   12.4   0.0   8.7e-05       0.1     238     300 ..    1718    1776 ..    1661    1779 .. 0.87

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00033
      AAA_21   1 lnvliGpNgsGKSnLLdaldllarldrdvegltdelsggggi 42 
                 +++l G+Ng+GK++ +  l +l              ++++g+
  KOO24989.1 679 VTGLLGANGAGKTTTISMLTGL-------------IPPTSGT 707
                 699*************999888.............3444444 PP

  == domain 2  score: 35.2 bits;  conditional E-value: 9.8e-12
      AAA_21 236 elSdGtkrllalltallralkkgsllliDEpEngLHPkllrrllellkelsrngaQviltTH 297
                 +lS G+kr l+l+ +l+  +   +++++DEp +g++P+  r+++ ll+e ++ g  ++ltTH
  KOO24989.1 782 NLSGGQKRKLCLAISLIGNA---RTVFLDEPTSGMDPHSRRSIWALLREQRE-GRTIVLTTH 839
                 68****************99...99**********************99999.********* PP

  == domain 3  score: 2.1 bits;  conditional E-value: 0.12
      AAA_21    3 vliGpNgsGKSnLLdal 19  
                  ++ G Ng+GKS+ +  l
  KOO24989.1 1615 GFLGVNGAGKSTTFSML 1631
                  678*********88766 PP

  == domain 4  score: 12.4 bits;  conditional E-value: 8.7e-05
      AAA_21  238 SdGtkrllalltallralkkgsllliDEpEngLHPkllrrllellkelsrngaQviltTHSpl 300 
                  S G kr l++  al   +    l+ +DEp +g++ +  r l+ ++k+ ++ g   +ltTHS +
  KOO24989.1 1718 SGGNKRKLCVGIALVGSP---QLVMLDEPSSGMDAASKRFLWSVIKRRTK-GCMTVLTTHSME 1776
                  889999988889999877...99**********************99999.9*********75 PP

>> SbcCD_C  Putative exonuclease SbcCD, C subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.1       4.6   5.5e+03      42      58 ..     524     540 ..     523     545 .. 0.82
   2 !   11.7   0.0    0.0002      0.23      56      89 ..     800     826 ..     773     827 .. 0.73
   3 ?    5.7   0.0     0.014        17      63      87 ..    1734    1758 ..    1693    1761 .. 0.81

  Alignments for each domain:
  == domain 1  score: -2.3 bits;  conditional E-value: 4.6
     SbcCD_C  42 aylalaaalaalyssae 58 
                 +++ l+a+l a+y+ ++
  KOO24989.1 524 MAFYLGASLMAQYEGSQ 540
                 57889********9864 PP

  == domain 2  score: 11.7 bits;  conditional E-value: 0.0002
     SbcCD_C  56 saegrepalrlvfLDEAFsklDeesiatllelle 89 
                 +        r+vfLDE  s++D++s++++ +ll+
  KOO24989.1 800 N-------ARTVFLDEPTSGMDPHSRRSIWALLR 826
                 3.......589******************99997 PP

  == domain 3  score: 5.7 bits;  conditional E-value: 0.014
     SbcCD_C   63 alrlvfLDEAFsklDeesiatllel 87  
                  +++lv+LDE  s++D+ s + l ++
  KOO24989.1 1734 SPQLVMLDEPSSGMDAASKRFLWSV 1758
                  589************9998777665 PP

>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.5   0.0     0.068        82      25      41 ..     678     694 ..     653     702 .. 0.79
   2 !    9.2   0.0   0.00063      0.75     125     197 ..     765     839 ..     713     856 .. 0.82
   3 ?   -1.6   0.0       1.2   1.5e+03      30      40 ..    1617    1627 ..    1611    1633 .. 0.83
   4 ?    2.0   0.0     0.099   1.2e+02     155     205 ..    1731    1781 ..    1694    1792 .. 0.80

  Alignments for each domain:
  == domain 1  score: 2.5 bits;  conditional E-value: 0.068
                 SEEEEEESTTSSHHHHH CS
                 xxxxxxxxxxxxxxxxx RF
       SMC_N  25 sftaivGpNGSGKsnll 41 
                 ++t ++G+NG+GK+  +
  KOO24989.1 678 QVTGLLGANGAGKTTTI 694
                 6899*********9765 PP

  == domain 2  score: 9.2 bits;  conditional E-value: 0.00063
                 HHHHCTT-STT......CS-HHHHHHHHHHHHHHHHCCS--SEEEECTTTTTS-HHHHHHHHHHHHHHCTTSEEEEE-S CS
                 xxxxxxxxxxx......xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N 125 ellesagiske......lLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvkkvaellkeksknaQfivisl 197
                 +ll  ++++++      +LSgG+k      L +Ai  +  a  ++lDe  + +D + ++ +  ll+e+++   ++ +++
  KOO24989.1 765 QLLTYVMLQEKrltaacNLSGGQKR----KLCLAISLIGNARTVFLDEPTSGMDPHSRRSIWALLREQREGRTIVLTTH 839
                 555555555555555569******8....5667777888888999************************7766666665 PP

  == domain 3  score: -1.6 bits;  conditional E-value: 1.2
                  EESTTSSHHHH CS
                  xxxxxxxxxxx RF
       SMC_N   30 vGpNGSGKsnl 40  
                  +G NG+GKs  
  KOO24989.1 1617 LGVNGAGKSTT 1627
                  69*******76 PP

  == domain 4  score: 2.0 bits;  conditional E-value: 0.099
                  CCS--SEEEECTTTTTS-HHHHHHHHHHHHHHCTTSEEEEE-SSHHHCCC- CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N  155 kvkpaplyllDeidaaLDeknvkkvaellkeksknaQfivislreemleka 205 
                   v    l++lDe  + +D++  + + +++k+++k +  + ++++ e +e  
  KOO24989.1 1731 LVGSPQLVMLDEPSSGMDAASKRFLWSVIKRRTKGCMTVLTTHSMEECEAL 1781
                  44555699**************************99999999987766654 PP

>> ABC2_membrane  ABC-2 type transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.8  12.9   7.2e-07   0.00086      41     182 ..     371     504 ..     334     529 .. 0.82
   2 ?   -1.4  15.1       1.1   1.3e+03      47     180 ..    1279    1411 ..    1240    1451 .. 0.71

  Alignments for each domain:
  == domain 1  score: 18.8 bits;  conditional E-value: 7.2e-07
  ABC2_membrane  41 gnlgnsedgl.nrpgllffsvlflafsaltsvapvferergvlerelvsplyslsayvlakvlvelpvsllqalifllivyflvgldlsrfflfll 135
                    +      +++ n +gl++ + + + +s++  + +v e+e ++ e++l+++  +l+ay+ + ++++ +  ++ al+  +i+++   +++s   l+++
     KOO24989.1 371 F------NFAgNLIGLVVVFSFLIPISTMLRA-LVLEKESKLREQLLTMGA-TLPAYYGSVLTTYGASYFITALVCAAIIFPS-CYTYSDPTLVVA 457
                    2......2333448999999888996676666.******************.******9999999999999999999999998.4444458***** PP

  ABC2_membrane 136 lllltalaasslgllisalapsfedasqlaslvllpllllsGffipi 182
                    l++l+ala++++ l++s ++++++ a++ ++l++++   +  +f  +
     KOO24989.1 458 LFVLFALATLAFTLALSPFFKNARLAALAGPLLFFISSQFYNAFLDK 504
                    **********************************9988777777665 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 1.1
  ABC2_membrane   47 edglnrpgllffsvlflafsaltsvapvferergvlerelvsplyslsayvlakvlvelpvsllqalifllivyflvgldls.rf.flflllll 138 
                     +++++    +++++ f +++a + v +v+ere g+ + ++ s++  +  y l+++++++++ l++a+  l+++++    + +  +   ++  + 
     KOO24989.1 1279 DSFISLFASIMILIPFAFVAAQFVVPLVRERESGSKQMQFISGV-GPVIYWLSNWAWDALMFLIIAASTLVVFVIQ--NRSEfTGtTEAFGGTT 1369
                     33445588899999999999999999******************.*************988888777766665553..3333322455555555 PP

  ABC2_membrane  139 ltalaasslgllisalapsfedasqlaslvllpllllsGffi 180 
                     l++l++    + +s+ a+   +    + +v++ + +lsGf  
     KOO24989.1 1370 LLLLTFGVAVVPLSSAASFGFTTPSNGLIVMIAFHFLSGFGL 1411
                     555555555555555555555555555666666667777654 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.4   0.4   0.00034      0.41      16      50 ..     671     704 ..     659     709 .. 0.70
   2 ?    5.6   0.1     0.011        13      24      48 ..    1613    1637 ..    1602    1642 .. 0.73

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00034
      AAA_29  16 tieidlkgatlltGpsGsGKSTllDAiqalLvpak 50 
                 ++e+ + ++t l G++G+GK+T + ++ + L+p++
  KOO24989.1 671 DLEMAPGQVTGLLGANGAGKTTTI-SMLTGLIPPT 704
                 34445455999***********99.6666666655 PP

  == domain 2  score: 5.6 bits;  conditional E-value: 0.011
      AAA_29   24 atlltGpsGsGKSTllDAiqalLvp 48  
                   + + G +G+GKST +  ++  Lvp
  KOO24989.1 1613 CFGFLGVNGAGKSTTFSMLTGSLVP 1637
                  56689*********87655555555 PP

>> MukB  MukB N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.8   0.00016      0.19      27      54 ..     678     704 ..     670     708 .. 0.86
   2 ?    4.7   0.1     0.019        23      33      53 ..    1618    1638 ..    1614    1650 .. 0.89

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.00016
                 HHHHHHS--SHHHHHHHHHHHHHHS--T CS
        MukB  27 lvttlsGgnGaGksttmaafvtaliPdl 54 
                  vt l G+nGaGk+tt+ +++t liP  
  KOO24989.1 678 QVTGLLGANGAGKTTTI-SMLTGLIPPT 704
                 69***********9985.7889999965 PP

  == domain 2  score: 4.7 bits;  conditional E-value: 0.019
                  S--SHHHHHHHHHHHHHHS-- CS
        MukB   33 GgnGaGksttmaafvtaliPd 53  
                  G nGaGkstt   +  +l+P 
  KOO24989.1 1618 GVNGAGKSTTFSMLTGSLVPT 1638
                  89************9999995 PP

>> DUF4162  Domain of unknown function (DUF4162)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.9   0.0      0.15   1.8e+02      47      79 ..     929     964 ..     901     965 .. 0.74
   2 ?    9.2   0.0    0.0017       2.1       1      80 [.    1797    1890 ..    1797    1891 .. 0.67

  Alignments for each domain:
  == domain 1  score: 2.9 bits;  conditional E-value: 0.15
                 ---------------E...EEEEEEE---HHHHHHH CS
     DUF4162  47 eeaanellkaltsgve...irsFeeeePsLndIFie 79 
                   a ++l++ l++++    ++ F  +  +L+d+F++
  KOO24989.1 929 LLAFQRLFTDLEQKLGsfgVKDFGATCTTLEDVFLK 964
                 4566889999955444488***************97 PP

  == domain 2  score: 9.2 bits;  conditional E-value: 0.0017
                  E-HHHHHTTS-SS.EEEEE....-------.......---EEEE-TTS-EEEEE--.-----------.-..---EEEEEEEE---HHHHHHHH CS
     DUF4162    1 GtleeiKrsygkn.rieve....adaeellee.....pgveeveeeggelelkled.eeaanellkal.t..sgveirsFeeeePsLndIFiek 80  
                  G+++ +K++yg++ ++ ++    a +e++le+     +g+++ e e  +++l++++ +++ ++l++ l +  s   + + ++++ +L+ IFi+ 
  KOO24989.1 1797 GPIQALKSKYGQGyKLDMRldarARPEAILELlqqriEGIKSDELEPPSMVLTVPQgSATLSRLFALLsElrSTHHVLECSVTQCTLEQIFIQM 1890
                  7888999999655144466656533444444443243555555666688999999888999988777743326666999*************96 PP

>> MeaB  Methylmalonyl Co-A mutase-associated GTPase MeaB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.7   0.3     0.042        50      30      50 ..     678     698 ..     671     705 .. 0.89
   2 ?   10.1   0.1   0.00023      0.28      20      54 ..    1602    1636 ..    1594    1641 .. 0.88

  Alignments for each domain:
  == domain 1  score: 2.7 bits;  conditional E-value: 0.042
                 EEEEEEE-TTSSHHHHHHHHH CS
        MeaB  30 qvvGltGvPGaGkstlvealg 50 
                 qv Gl G  GaGk t+++ l+
  KOO24989.1 678 QVTGLLGANGAGKTTTISMLT 698
                 789**************9987 PP

  == domain 2  score: 10.1 bits;  conditional E-value: 0.00023
                  HHHGGG-S-SEEEEEEE-TTSSHHHHHHHHHHHHH CS
        MeaB   20 erllakaGraqvvGltGvPGaGkstlvealglelr 54  
                  + l+ + Gr +  G+ Gv GaGkst+ + l+ +l+
  KOO24989.1 1602 RDLCLRIGRGECFGFLGVNGAGKSTTFSMLTGSLV 1636
                  6778899*********************9998775 PP

>> Mg_chelatase  Magnesium chelatase, subunit ChlI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.8   0.1    0.0016         2      22      60 ..     677     715 ..     657     725 .. 0.78
   2 ?   -2.8   0.0       2.8   3.4e+03      83     115 ..     776     809 ..     728     837 .. 0.52
   3 ?    0.4   0.0       0.3   3.6e+02      27      60 ..    1616    1649 ..    1596    1667 .. 0.85
   4 ?   -0.1   0.0      0.43   5.1e+02       7      63 ..    1719    1775 ..    1716    1782 .. 0.77

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 0.0016
  Mg_chelatase  22 gHnlllvGppGsGKtmlakrlpsllpplseeealevaki 60 
                   g    l+G+ G+GKt  ++ l++l+pp s + +++  +i
    KOO24989.1 677 GQVTGLLGANGAGKTTTISMLTGLIPPTSGTATIDGLSI 715
                   5555689*********************99888876665 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 2.8
  Mg_chelatase  83 hsaskaalvGggskpkpGeislahnG.vLfLDEl 115
                   + +++  l Gg+++    +isl  n   +fLDE 
    KOO24989.1 776 RLTAACNLSGGQKRKLCLAISLIGNArTVFLDEP 809
                   3444555666666666666666544325666663 PP

  == domain 3  score: 0.4 bits;  conditional E-value: 0.3
  Mg_chelatase   27 lvGppGsGKtmlakrlpsllpplseeealevaki 60  
                    ++G  G+GK+   + l++ l p s +  le  +i
    KOO24989.1 1616 FLGVNGAGKSTTFSMLTGSLVPTSGDALLEGMSI 1649
                    789*****************99999999997766 PP

  == domain 4  score: -0.1 bits;  conditional E-value: 0.43
  Mg_chelatase    7 GqeeakraleiaaaGgHnlllvGppGsGKtmlakrlpsllpplseeealevakiasv 63  
                    G ++ k  + ia  G+ +l+++  p sG     kr+   + +  ++  + v + +s+
    KOO24989.1 1719 GGNKRKLCVGIALVGSPQLVMLDEPSSGMDAASKRFLWSVIKRRTKGCMTVLTTHSM 1775
                    6677788999******************99888887665555555666666666655 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.5   0.4    0.0021       2.5      21      39 ..     679     697 ..     671     701 .. 0.86
   2 ?    5.9   0.2     0.014        16      22      41 ..    1614    1633 ..    1603    1642 .. 0.85

  Alignments for each domain:
  == domain 1  score: 8.5 bits;  conditional E-value: 0.0021
      AAA_23  21 ltlItGpNGaGKTTildAi 39 
                 +t + G NGaGKTT +  +
  KOO24989.1 679 VTGLLGANGAGKTTTISML 697
                 8999**********98766 PP

  == domain 2  score: 5.9 bits;  conditional E-value: 0.014
      AAA_23   22 tlItGpNGaGKTTildAikl 41  
                  + + G NGaGK+T +  ++ 
  KOO24989.1 1614 FGFLGVNGAGKSTTFSMLTG 1633
                  7789*********9987775 PP

>> Zeta_toxin  Zeta toxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.1   0.0    0.0024       2.8      23      58 ..     684     719 ..     678     724 .. 0.88
   2 ?    0.8   0.0      0.21   2.5e+02      23      41 ..    1618    1636 ..    1616    1644 .. 0.82
   3 ?   -0.4   0.0      0.48   5.7e+02      90     139 ..    1779    1827 ..    1763    1835 .. 0.81

  Alignments for each domain:
  == domain 1  score: 7.1 bits;  conditional E-value: 0.0024
  Zeta_toxin  23 GqpGAGKselaellkdelerqgnvvrldpDdlRelh 58 
                 G+ GAGK++++++l+  + ++++  ++d+ ++R++ 
  KOO24989.1 684 GANGAGKTTTISMLTGLIPPTSGTATIDGLSIRTQM 719
                 899**************9999999999998888865 PP

  == domain 2  score: 0.8 bits;  conditional E-value: 0.21
  Zeta_toxin   23 GqpGAGKselaellkdele 41  
                  G  GAGKs++ ++l+ +l 
  KOO24989.1 1618 GVNGAGKSTTFSMLTGSLV 1636
                  668**********998875 PP

  == domain 3  score: -0.4 bits;  conditional E-value: 0.48
  Zeta_toxin   90 eaiengyniivegtlrspdvvkklaealkkaGYevevvvvavkkelSrlg 139 
                  ea+  ++ i v+gtl+    ++ l+ ++ + GY++  ++ a  + +++l+
  KOO24989.1 1779 EALCGRIGIMVDGTLSCLGPIQALKSKYGQ-GYKLDMRLDARARPEAILE 1827
                  5677899***********999999999988.9999888777666666655 PP

>> SRP54  SRP54-type protein, GTPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.9   0.9    0.0037       4.5       5      22 ..     681     698 ..     678     706 .. 0.85
   2 ?    4.0   0.1     0.029        34       6      22 ..    1616    1632 ..    1612    1645 .. 0.84

  Alignments for each domain:
  == domain 1  score: 6.9 bits;  conditional E-value: 0.0037
                 EEEESTTSSHHHHHHHHH CS
       SRP54   5 llvGlqGaGKTttlaKLa 22 
                  l+G +GaGKTtt++ L 
  KOO24989.1 681 GLLGANGAGKTTTISMLT 698
                 589***********9886 PP

  == domain 2  score: 4.0 bits;  conditional E-value: 0.029
                  EEESTTSSHHHHHHHHH CS
       SRP54    6 lvGlqGaGKTttlaKLa 22  
                  ++G++GaGK tt + L 
  KOO24989.1 1616 FLGVNGAGKSTTFSMLT 1632
                  79**********99886 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.6   0.2     0.058        69       3      26 ..     681     707 ..     679     731 .. 0.73
   2 ?    6.3   0.1    0.0081       9.6       3      26 ..    1615    1638 ..    1613    1649 .. 0.85

  Alignments for each domain:
  == domain 1  score: 3.6 bits;  conditional E-value: 0.058
                 EEEESTTSSHHHHHHHHHTS...TEEE CS
    MMR_HSR1   3 aivGrpNvGKStLinaltge...kaiv 26 
                 +++G   +GK+t i+ ltg    ++ +
  KOO24989.1 681 GLLGANGAGKTTTISMLTGLippTSGT 707
                 799***************953233344 PP

  == domain 2  score: 6.3 bits;  conditional E-value: 0.0081
                  EEEESTTSSHHHHHHHHHTSTEEE CS
    MMR_HSR1    3 aivGrpNvGKStLinaltgekaiv 26  
                  +++G   +GKSt ++ ltg+ + +
  KOO24989.1 1615 GFLGVNGAGKSTTFSMLTGSLVPT 1638
                  799****************96544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1901 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       656  (0.0365888); expected 358.6 (0.02)
Passed bias filter:                      430  (0.0239835); expected 358.6 (0.02)
Passed Vit filter:                        53  (0.0029561); expected 17.9 (0.001)
Passed Fwd filter:                        19  (0.00105974); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              15  [number of targets reported over threshold]
# CPU time: 1.03u 0.27s 00:00:01.30 Elapsed: 00:00:00.42
# Mc/sec: 13555.75
//
Query:       KOO24990.1  [L=803]
Description: hypothetical protein Ctob_005145 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    8.1e-09   35.6   0.0    1.3e-08   34.9   0.0    1.3  1  Galactosyl_T  Galactosyltransferase


Domain annotation for each model (and alignments):
>> Galactosyl_T  Galactosyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.9   0.0   7.2e-13   1.3e-08       2     106 ..      28     128 ..      27     157 .. 0.89

  Alignments for each domain:
  == domain 1  score: 34.9 bits;  conditional E-value: 7.2e-13
  Galactosyl_T   2 rRnaiRktWmnekeaegnriktlFlvGlsakedkkvkelvmeeaklygDivvvdledsYenltlKtltlllwavskvpeaklilkvDdDvyvnpdkL 98 
                   rR+ iR+t  + + + ++ ++ +F++  ++     +  +v +e++l +D+v++++ d+  +  +K ++++  a   +p a++++  DdD y++++++
    KOO24990.1  28 RRDKIRETASKFS-SYQTTVALRFVLAAPE---ASTSSAVAAEQQLRRDLVQLNISDTPFRCGFKYVLWFAHAHGAFPAAQFLGAGDDDAYIQIAHF 120
                   899****976666.6789********9888...78888899******************************************************99 PP

  Galactosyl_T  99 lsllkrel 106
                      l + +
    KOO24990.1 121 EADLRNVV 128
                   99888864 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (803 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       410  (0.022868); expected 358.6 (0.02)
Passed bias filter:                      327  (0.0182386); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.60u 0.26s 00:00:00.86 Elapsed: 00:00:00.42
# Mc/sec: 5704.04
//
Query:       KOO24991.1  [L=313]
Description: hypothetical protein Ctob_005146 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    7.8e-17   62.0   0.1    1.1e-07   32.7   0.0    2.9  2  2OG-FeII_Oxy_3  2OG-Fe(II) oxygenase superfamily
    7.6e-10   39.3   0.0    0.00066   20.3   0.0    3.2  3  2OG-FeII_Oxy_4  2OG-Fe(II) oxygenase superfamily
     0.0057   17.0   0.0      0.018   15.4   0.0    1.9  2  2OG-FeII_Oxy_5  Putative 2OG-Fe(II) oxygenase
  ------ inclusion threshold ------
      0.041   14.4   0.4       0.13   12.7   0.0    2.0  2  2OG-FeII_Oxy    2OG-Fe(II) oxygenase superfamily


Domain annotation for each model (and alignments):
>> 2OG-FeII_Oxy_3  2OG-Fe(II) oxygenase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.6   0.2   3.9e-09   1.8e-05       2      55 ..      62     155 ..      61     187 .. 0.83
   2 !   32.7   0.0   2.4e-11   1.1e-07      38      96 .]     259     307 ..     232     307 .. 0.81

  Alignments for each domain:
  == domain 1  score: 25.6 bits;  conditional E-value: 3.9e-09
                     EEEEE-TT-EEEEE-SS--...................................--TT.-.EEEEEEEEE.....E.T-B--EEE......... CS
  2OG-FeII_Oxy_3   2 qvlrygegqeykpHvDnfe...................................keegsgqrrltvllyLne.kes.eeGGelelyekdk...e 55 
                      ++ryg+g  + +H+D  +                                   ++ ++ +r++t+l+yLn+ +++  +GG+l+++e++     
      KOO24991.1  62 SYTRYGPGASLPRHTDEHHgelkkahsvasgdenkkrnegasspspsgseaprsGDGKTTRRSVTWLVYLNDnWDAqLDGGALRVHERAApsaA 155
                     679*************999********************************9996666788************77779*******777655440 PP

  == domain 2  score: 32.7 bits;  conditional E-value: 2.4e-11
                     ...ET-B--EEE..........---TT-EEEEE-..B-TEEE--B.-SS-EEEEEEEEE CS
  2OG-FeII_Oxy_3  38 ekeseeGGelelyekdkeavkikpkkgrlvlFesdellpHevlpvtkggeRlsltgwir 96 
                     ++e e+GGe ++       ++++p +g+lvlF+s ++ pHevlp+t++ eR++++gw++
      KOO24991.1 259 PPEGEDGGE-RI-------RDVPPTAGTLVLFDSVSV-PHEVLPTTRR-ERFACSGWFH 307
                     355588887.55.......688************655.8*****9886.*********8 PP

>> 2OG-FeII_Oxy_4  2OG-Fe(II) oxygenase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.3   0.0     0.063   2.8e+02       1      22 [.      61      82 ..      61     101 .. 0.85
   2 !   12.9   0.0   2.9e-05      0.13      18      48 ..     118     149 ..     110     159 .. 0.83
   3 !   20.3   0.0   1.5e-07   0.00066      51      93 .]     267     307 ..     243     307 .. 0.82

  Alignments for each domain:
  == domain 1  score: 2.3 bits;  conditional E-value: 0.063
  2OG-FeII_Oxy_4  1 lsvssYekgdvllnHdDvlege 22
                    +s+++Y  g  l +H D++ ge
      KOO24991.1 61 MSYTRYGPGASLPRHTDEHHGE 82
                    7999*************98765 PP

  == domain 2  score: 12.9 bits;  conditional E-value: 2.9e-05
  2OG-FeII_Oxy_4  18 vlegeRrvayilyleeeWked.dGGaLllsdd 48 
                       + +R v+ ++yl+++W+++ dGGaL++++ 
      KOO24991.1 118 GKTTRRSVTWLVYLNDNWDAQlDGGALRVHER 149
                     45679*************98758****99875 PP

  == domain 3  score: 20.3 bits;  conditional E-value: 1.5e-07
  2OG-FeII_Oxy_4  51 dvtksivPkwnqlvlFev.keshsvaevasvaekeRlsisgWfh 93 
                     +  ++++P+ ++lvlF++ +  h+v     ++++eR++ sgWfh
      KOO24991.1 267 ERIRDVPPTAGTLVLFDSvSVPHEVLP---TTRRERFACSGWFH 307
                     556899**********99345588877...4579*********9 PP

>> 2OG-FeII_Oxy_5  Putative 2OG-Fe(II) oxygenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.0       2.8   1.3e+04      54      78 ..     157     181 ..     129     182 .. 0.57
   2 !   15.4   0.0   4.1e-06     0.018      34      95 ..     237     299 ..     215     303 .. 0.72

  Alignments for each domain:
  == domain 1  score: -3.3 bits;  conditional E-value: 2.8
  2OG-FeII_Oxy_5  54 rkeeakeenqslvdvkpkeGdlvlF 78 
                     +  + ++ +  ++  +++eG+l +F
      KOO24991.1 157 VGARGADLQIGWLKATASEGELPVF 181
                     3344445666666777777777666 PP

  == domain 2  score: 15.4 bits;  conditional E-value: 4.1e-06
  2OG-FeII_Oxy_5  34 eagalkledpr.lavelgaparkeeakeenqslvdvkpkeGdlvlFPs.wlrHevlpnegeeeR 95 
                     +a + +l d   +av+   p++  e ++  +++ dv p++G+lvlF s ++ Hevlp + + eR
      KOO24991.1 237 DAARFHLIDSPkSAVSGLLPPTPPEGEDGGERIRDVPPTAGTLVLFDSvSVPHEVLPTTRR-ER 299
                     44444444444144444466666667778899****************5589****98655.55 PP

>> 2OG-FeII_Oxy  2OG-Fe(II) oxygenase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.3      0.59   2.6e+03       2      19 ..      59      82 ..      58     149 .. 0.67
   2 ?   12.7   0.0   2.9e-05      0.13      77     100 ..     285     307 ..     234     308 .. 0.74

  Alignments for each domain:
  == domain 1  score: -1.1 bits;  conditional E-value: 0.59
                  --EEEEEE.....E-S------.- CS
  2OG-FeII_Oxy  2 eellvlny.....ypphpdpev.i 19
                  +e+   +y     +p h+d ++ +
    KOO24991.1 59 HEMSYTRYgpgasLPRHTDEHHgE 82
                  566667777777677777777542 PP

  == domain 2  score: 12.7 bits;  conditional E-value: 2.9e-05
                   ----EEE----GTGSEEEEEEEE- CS
  2OG-FeII_Oxy  77 ksvlHrVlpvnegerRvsiayfie 100
                    sv+H+Vlp+++ e R+++  +++
    KOO24991.1 285 VSVPHEVLPTTRRE-RFACSGWFH 307
                   48******999988.*******98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (313 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       318  (0.0177366); expected 358.6 (0.02)
Passed bias filter:                      250  (0.0139439); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.43u 0.25s 00:00:00.68 Elapsed: 00:00:00.41
# Mc/sec: 2301.11
//
Query:       KOO24992.1  [L=281]
Description: hypothetical protein Ctob_005141 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    6.1e-12   45.9  10.8       0.26   12.3   0.0    5.7  5  SHIPPO-rpt  Sperm-tail PG-rich repeat


Domain annotation for each model (and alignments):
>> SHIPPO-rpt  Sperm-tail PG-rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.9   0.0   0.00017         3       1      11 [.      49      59 ..      49      83 .. 0.83
   2 !    5.9   0.2    0.0015        27       5      30 ..      97     132 ..      97     133 .. 0.88
   3 !   12.3   0.0   1.4e-05      0.26       1      13 [.     143     154 ..     143     183 .. 0.77
   4 !    9.6   0.8   9.8e-05       1.8       2      29 ..     193     221 ..     192     226 .. 0.82
   5 !   11.6   0.0   2.4e-05      0.42       2      18 ..     237     250 ..     236     256 .. 0.78

  Alignments for each domain:
  == domain 1  score: 8.9 bits;  conditional E-value: 0.00017
  SHIPPO-rpt  1 lPGPGtYkpnk 11
                +PGPG+Y p +
  KOO24992.1 49 TPGPGSYTPGQ 59
                7******9976 PP

  == domain 2  score: 5.9 bits;  conditional E-value: 0.0015
  SHIPPO-rpt   5 GtYkpnk.........nvpsn.ksaPkysfGqrkrd 30 
                 G+Y+p           ++ s+  +a   sfG+++++
  KOO24992.1  97 GSYDPYVlkelavtskKSASKaMKAGQGSFGTKHQR 132
                 78999999999888888999999999******9986 PP

  == domain 3  score: 12.3 bits;  conditional E-value: 1.4e-05
  SHIPPO-rpt   1 lPGPGtYkpnknv 13 
                 +PGPG+Y+ +  +
  KOO24992.1 143 TPGPGAYNGDV-M 154
                 7*******998.3 PP

  == domain 4  score: 9.6 bits;  conditional E-value: 9.8e-05
  SHIPPO-rpt   2 PGPGtYkpnknvpsn.ksaPkysfGqrkr 29 
                 PG G+Y+p  ++  + +s P+ s+  +  
  KOO24992.1 193 PGAGAYSPSFTAIEKkPSNPANSMKAKAS 221
                 9*********8888888899999876655 PP

  == domain 5  score: 11.6 bits;  conditional E-value: 2.4e-05
  SHIPPO-rpt   2 PGPGtYkpnknvpsnks 18 
                 PGPG+Y+++   +++ s
  KOO24992.1 237 PGPGAYEIDE--KIR-S 250
                 9********9..555.3 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (281 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       494  (0.0275531); expected 358.6 (0.02)
Passed bias filter:                      213  (0.0118802); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.22s 00:00:00.63 Elapsed: 00:00:00.38
# Mc/sec: 2208.52
//
Query:       KOO24993.1  [L=578]
Description: phosphoribosylaminoimidazole carboxylase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.1e-64  215.6   2.4    2.1e-64  215.6   2.4    2.4  2  AIRC             AIR carboxylase
    3.4e-46  157.0   0.0      6e-46  156.1   0.0    1.4  1  ATP-grasp        ATP-grasp domain
    5.1e-17   61.3   0.0    1.1e-16   60.3   0.0    1.6  1  PurK_C           Phosphoribosylaminoimidazole carboxylase C-t
  ------ inclusion threshold ------
      0.024   14.1   0.0      0.041   13.4   0.0    1.4  1  CPSase_L_D2      Carbamoyl-phosphate synthase L chain, ATP bi
        0.1   12.1   0.0       0.19   11.2   0.0    1.4  1  Dala_Dala_lig_C  D-ala D-ala ligase C-terminus


Domain annotation for each model (and alignments):
>> AIRC  AIR carboxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   2.2      0.71   2.5e+03      68     122 ..     200     253 ..     197     259 .. 0.76
   2 !  215.6   2.4   5.7e-68   2.1e-64       2     146 ..     409     553 ..     408     555 .. 0.98

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 0.71
                 HHHHHHHHSSS-EEEEEE--STTCCHHHHHHHHT--TTS--EE-SST.HHHHHHHH CS
        AIRC  68 LpgvvaslttlPVigvPvkskalkgldsllSivqmPsgvpvatvaig.kaknAall 122
                 L+ +va  ++   ++ Pv +  ++++ds l +v +P+ +  a++a+  k + Aa++
  KOO24993.1 200 LAVMVARSASGVTVSYPVVE--MTAIDSQLHTVLVPASIDEAALALAsKIASAAIA 253
                 77788888888888888888..8899999999999999999999877344444443 PP

  == domain 2  score: 215.6 bits;  conditional E-value: 5.7e-68
                 EEEEESSGGGHHHHHHHHHHHHHTT-EEEEEE--TTTSHHHHHHHHHHCHTTTEEEEEEEEESS--HHHHHHHHSSS-EEEEEE--STTCCHHHHHHHH CS
        AIRC   2 VgiimGSdsDlevmkkaaeilkelgveyevrvvSahrtpeelleyaeeaeerglkviIagAGgaahLpgvvaslttlPVigvPvkskalkgldsllSiv 100
                 VgiimGSdsDl++m++aaeil++++v++e+++vSahrtp++++eya+ a+ rgl++iIagAGgaahLpg+va+lt+lPVigvPvks+al+g dsllSiv
  KOO24993.1 409 VGIIMGSDSDLPTMRAAAEILEHFKVPFELTIVSAHRTPKRMFEYAQAASGRGLQCIIAGAGGAAHLPGMVAALTPLPVIGVPVKSSALSGNDSLLSIV 507
                 9************************************************************************************************** PP

                 T--TTS--EE-SSTHHHHHHHHHHHHHTTT-HHHHHHHHHHHHHHH CS
        AIRC 101 qmPsgvpvatvaigkaknAallAaqilalkdeelaekleeyreelk 146
                 qmP+gvpvatvaig+a+nA+llA+++l+++d++l+++++++++e++
  KOO24993.1 508 QMPRGVPVATVAIGNAANAGLLAVRMLGMADRKLRAAMATFMAEEE 553
                 **************************************99988765 PP

>> ATP-grasp  ATP-grasp domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  156.1   0.0   1.7e-49     6e-46       6     171 .]     125     293 ..     119     293 .. 0.98

  Alignments for each domain:
  == domain 1  score: 156.1 bits;  conditional E-value: 1.7e-49
                 --B-EEEEECCHHHHHHHHHHH-SCEEEEESSS-CTTTTEEEECTCCGHHCHHHHC...GTTCEEEEE----SEEEEEEEEEETTC-EEE--EEEEEEE CS
   ATP-grasp   6 lpvprflaveskeeleeaaeelglpvvvKarrlgydGkGqsvvrseedleqaleal...keekvivEefvpfekElsvlvvrsaeGetafypvvetvqe 101
                 +p+ +f+ + + ++l +a e+ g+p+++Ka++ +ydG+G+  v s+ ++ +a+++l   ++e++++E +  f+kEl+v+v+rsa+G t++ypvve +  
  KOO24993.1 125 VPLGDFCEIPDVAALLSAGERWGYPIMLKAKKNAYDGRGNLPVGSAVEAASAFATLsnnGKEELYAERWCLFTKELAVMVARSASGVTVSYPVVEMTAI 223
                 68889**********************************************9999999999************************************** PP

                 TTEEEEEEECEE-SCHHHHHHHHHHHHHHHHHTSSEEEEEEEEEETTCTEEEEEEESS--GGGGGHHHHB CS
   ATP-grasp 102 dgilrlsvapaevsekaqkkaeeiakkiveeLggvGvfavElFvledgellvnElapRpHnsGhvtldaa 171
                 d  l+++++pa+++e+a++ a +ia+ ++++L g G+f+vElF++ dg+ l+nE+apRpHnsGh+t+d++
  KOO24993.1 224 DSQLHTVLVPASIDEAALALASKIASAAIASLSGGGIFGVELFLMPDGSALLNEIAPRPHNSGHYTMDSC 293
                 ********************************************************************98 PP

>> PurK_C  Phosphoribosylaminoimidazole carboxylase C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.3   0.0   2.9e-20   1.1e-16       1      52 [.     331     388 ..     331     392 .. 0.90

  Alignments for each domain:
  == domain 1  score: 60.3 bits;  conditional E-value: 2.9e-20
      PurK_C   1 avMvNlLGedae......ekleellaipgahlHlYgKeearpgRKmGHitvvgdsaee 52 
                 a+M+N++G+++       ++ +++l +p a++H+YgK+  +++RKmGHi+v+++s + 
  KOO24993.1 331 AAMLNVIGSADGslpktlASVQRALTMPSASIHWYGKSPPKAKRKMGHINVTATSSAG 388
                 89*********988877777777******************************99875 PP

>> CPSase_L_D2  Carbamoyl-phosphate synthase L chain, ATP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.0   1.1e-05     0.041       1     119 [.     110     226 ..     110     262 .. 0.81

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 1.1e-05
                  SHHHHHHHHHHTT-BBSSEECSSBSSHHHHHHHHHHH-SSEEEEET.TCCTTTTEEEESSHHHHHHHHHHHHHHHHHHHSTS-EEEEE--SSSEEEEE CS
  CPSase_L_D2   1 DkesakealkkinvpvvpssaapvetleealaiakeigyPviikaa.fglGGkGmrvarneeelaelvkkalaeakaafgnkqvlvekslkgpkeiEv 97 
                  Dk + k  l+k++  v  +  + + ++   l++ ++ gyP+++ka   +  G+G   + +  e a ++++ +++     g+++++ e++    ke+ v
   KOO24993.1 110 DKYAQKIHLSKLGGAVPLGDFCEIPDVAALLSAGERWGYPIMLKAKkNAYDGRGNLPVGSAVEAASAFATLSNN-----GKEELYAERWCLFTKELAV 202
                  6667777788888888889999999999****************9725789***99888877766666544333.....68***************** PP

                  EEEEETTS-EEE..EEEEEECCEC CS
  CPSase_L_D2  98 evlrDakgnvit..vcerenslql 119
                   v r a+g ++   v e+  ++  
   KOO24993.1 203 MVARSASGVTVSypVVEMTAIDSQ 226
                  ****99999886345666666644 PP

>> Dala_Dala_lig_C  D-ala D-ala ligase C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   5.4e-05      0.19     122     176 ..     228     282 ..     195     290 .. 0.91

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 5.4e-05
                      -EEESS----HHHHHHHHHHHHHHHHHTT--SEEEEEEEEETTTEEEEEEEESS- CS
  Dala_Dala_lig_C 122 aqlevpaklekeveekiqelalkaykaldlrGlaRvDfflteegeivlnEvNtlP 176
                       ++ vpa+++++  +  +++a  a + l++ G+  v +fl  +g+ +lnE+ + P
       KOO24993.1 228 HTVLVPASIDEAALALASKIASAAIASLSGGGIFGVELFLMPDGSALLNEIAPRP 282
                      56789**********************************************9877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (578 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       382  (0.0213063); expected 358.6 (0.02)
Passed bias filter:                      285  (0.015896); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.55u 0.25s 00:00:00.80 Elapsed: 00:00:00.42
# Mc/sec: 4158.82
//
Query:       KOO24994.1  [L=384]
Description: hypothetical protein Ctob_005143 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (384 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       426  (0.0237604); expected 358.6 (0.02)
Passed bias filter:                      281  (0.0156729); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.45u 0.23s 00:00:00.68 Elapsed: 00:00:00.40
# Mc/sec: 2889.86
//
Query:       KOO24995.1  [L=596]
Description: metal ion (mn2 -iron) transporter family [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.1e-99  332.4   8.4    4.1e-99  331.9   8.4    1.2  1  Nramp     Natural resistance-associated macrophage protein


Domain annotation for each model (and alignments):
>> Nramp  Natural resistance-associated macrophage protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  331.9   8.4  2.3e-103   4.1e-99       2     357 ..      80     482 ..      79     483 .. 0.96

  Alignments for each domain:
  == domain 1  score: 331.9 bits;  conditional E-value: 2.3e-103
       Nramp   2 atdlqaGaqfGykLlwvlllstllaillqelsarLGlvTgkglaelirerlpkkvsillwilaelaiiatdlaeviGaAialnllf..gipllvgvlit 98 
                 + +lq Ga    +L+wvl ++t+ +++lqe+sarLGlvTg++la+++r+++p+++s+++++++e+a+i++d++ev++++ia+nll+   ip+++g+lit
  KOO24995.1  80 ENNLQQGAYTRLTLVWVLWWATVTGFVLQEMSARLGLVTGRDLAQAVRDEYPRWLSLVVYVMMEIAVIGADVQEVVASGIAFNLLShgSIPVWAGCLIT 178
                 568999********************************************************************************756********** PP

       Nramp  99 avlvllllflekggyrklEaliialvlvialsFiaelflvkpd.wgevlkglvvPslpgkeslllavgilGatvmphnlflhsslvqerkitidrseke 196
                 av+++++l++   g+r lE ++++l+++++l+F+++l  +  + w  v++g+v+P++p+ ++++ +vg +Ga++mphnl+lhs lv +rk +++ + + 
  KOO24995.1 179 AVDTITFLAVGYLGVRYLEGFVCVLMGIMSLCFFINLGHSGLEaWDGVIEGWVIPTMPT-GAFTQVVGTIGAVIMPHNLYLHSGLVLSRKLERSSDYRV 276
                 ****************************************9864899************.******************************666444444 PP

       Nramp 197 .ealkyeriDtiialivaflinlailivaAavly.sggkdv...........................................esledaaeaLepllG 250
                  eal y+r++++ al++afl+nla+++++ a ++ ++ ++                                              le+a  aL+  lG
  KOO24995.1 277 hEALWYSRVESAGALLFAFLVNLAVVVTFSARFFdPTCQEAaegplaclsrtayeevngplpaqppvraglgtpcggshhicgvIGLENAGVALKDGLG 375
                 99********************************955555569******************************************************** PP

       Nramp 251 skaasvlFaigLlaaGlsStitgtlagqyvmegflglrislwlrrlitralafvpalivilligaele.lvkllvlsqvllslllPfaliplllltssk 348
                  +++ +++aigLlaaG+ St+++t+agq++++g l++++++w+r++ tr++a+ paliv+ll+++ +  + +++ + +vl+s++lPfa++p l ++ s 
  KOO24995.1 376 -DWSLYVWAIGLLAAGQASTMVCTYAGQILLSGCLDIELPPWKRVFATRLFALGPALIVALLTSNGSGaFDNINEYLNVLQSVQLPFAMLPTLHFAAST 473
                 .7*************************************************************999988999*************************** PP

       Nramp 349 klMGefkns 357
                 + +G+f++s
  KOO24995.1 474 RRLGRFATS 482
                 ******987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (596 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       456  (0.0254337); expected 358.6 (0.02)
Passed bias filter:                      283  (0.0157845); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.53u 0.28s 00:00:00.81 Elapsed: 00:00:00.58
# Mc/sec: 3089.79
//
Query:       KOO24996.1  [L=1040]
Description: hypothetical protein Ctob_005149 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.5e-16   60.4   0.0    1.9e-09   38.2   0.0    4.2  3  Filamin         Filamin/ABP280 repeat
    1.1e-06   27.8   0.3    5.3e-05   22.5   0.2    2.6  2  EF-hand_1       EF hand
    1.4e-05   24.7   0.1    5.6e-05   22.8   0.1    2.0  2  EF-hand_6       EF-hand domain
    1.5e-05   25.2   0.0    5.8e-05   23.3   0.0    2.0  1  Invasin_D3      Invasin, domain 3
    2.1e-05   23.8   0.9    0.00012   21.4   0.1    2.3  2  EF-hand_5       EF hand
    5.1e-05   23.6   0.1    0.00026   21.4   0.1    2.3  2  EF-hand_7       EF-hand domain pair
  ------ inclusion threshold ------
       0.13   12.5   0.3        0.4   10.9   0.3    1.9  1  DUF1492         Protein of unknown function (DUF1492)
       0.16   11.8   0.4        0.5   10.3   0.2    1.9  2  EF-hand_8       EF-hand domain pair
       0.17   11.4   0.7        3.5    7.2   0.1    2.3  2  TF_Zn_Ribbon    TFIIB zinc-binding


Domain annotation for each model (and alignments):
>> Filamin  Filamin/ABP280 repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.4   0.0     0.016        31      82     103 .]     559     580 ..     497     580 .. 0.86
   2 !   11.1   0.0   0.00028      0.55       3     103 .]     589     809 ..     587     809 .. 0.68
   3 !   38.2   0.0   9.7e-13   1.9e-09      24     102 ..     858     933 ..     838     934 .. 0.87

  Alignments for each domain:
  == domain 1  score: 5.4 bits;  conditional E-value: 0.016
                 SSCEEEEEEEETTCE-TTSSEE CS
     Filamin  82 epgtyrvsvkldgkhiggsPfd 103
                 ++g++++ v+l g++ +gsPf+
  KOO24996.1 559 ASGQMSIGVSLMGEPLPGSPFT 580
                 469******************6 PP

  == domain 2  score: 11.1 bits;  conditional E-value: 0.00028
                 STTSEEEESGGGTEEETTS-EEEEEEESSSTSCCCSTTS..EEEEE......ESSTS.......................................... CS
     Filamin   3 dpskskvnGpGieasvagesltFtvytkdakgeksevggdelqvriv....tgsphgaatk...................................... 59 
                 +p +++++G+ + + +a+++ +F++  +d  g   +  + el++ i+    +++ h+++++                                      
  KOO24996.1 589 HPAQCVLSGKALSEITANRQEHFQICYRDVLGHLAH--AIELELSIDkvdkVEEGHSCRNSeslpdgqntgrsrkgrrgkatalrlnvearqqqlrhwn 685
                 688999999999999999************999444..4555555557778555555555566777777777777888888888888888888888888 PP

                 .................................................................................EEEEEEEE-SSSEEEEEE CS
     Filamin  60 ...................................................................s.............svkievvdnedgtytvsY 78 
                                                                                    +             +   + + +   +++v +
  KOO24996.1 686 hrlaldsnrerlkakdrqdeiealesrlnsqksargsprehryamglgsprgspravgpwaqeliadPtgiglaygglhpgR--LHAHGRLFDSHKVFF 782
                 8888877777777777777777777666666666666666666655555555555444444444333033444444444331..223333356789*** PP

                 --SSSCEEEEEEEETTC..E-TTSSEE CS
     Filamin  79 tpeepgtyrvsvkldgk..higgsPfd 103
                  + ++g+y ++v ++ +  + +gsPf+
  KOO24996.1 783 SVGASGDYLLHVHFRHQatPLPGSPFK 809
                 **************885559*****96 PP

  == domain 3  score: 38.2 bits;  conditional E-value: 9.7e-13
                 EEEEEESSSTSCCCSTTS..EEEEE..ESSTS.....EEEEEEEE-SSSEEEEEE--SSSCEEEEEEEETTCE-TTSSE CS
     Filamin  24 tFtvytkdakgeksevggdelqvrivtgsphgaatkssvkievvdnedgtytvsYtpeepgtyrvsvkldgkhiggsPf 102
                 t  v ++d+ g+++ +gg  + + +v+++++       ++  v+d+++g+y +++  +++g+yrv vk+dg hi+gsP 
  KOO24996.1 858 TLRVTARDKMGNPCVSGGAGITCGVVMQDQNVD--L-GLESTVEDEGNGKYACKWCGSRAGQYRVFVKMDGLHIQGSPL 933
                 7899*********************66665444..4.67789************************************5 PP

>> EF-hand_1  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.5   0.2   2.6e-08   5.3e-05       3      27 ..     980    1004 ..     978    1006 .. 0.90
   2 ?    2.7   0.0     0.057   1.1e+02       4      18 ..    1018    1032 ..    1016    1033 .. 0.86

  Alignments for each domain:
  == domain 1  score: 22.5 bits;  conditional E-value: 2.6e-08
                  HHHHHHHTTTSSSEEEHHHHHHHHH CS
   EF-hand_1    3 keiFrefDkDgdGkIdfeEfkellk 27  
                    +Fr +DkDg+G++d +Efk++l 
  KOO24996.1  980 MSAFRSLDKDGSGQLDMNEFKTMLV 1004
                  579********************96 PP

  == domain 2  score: 2.7 bits;  conditional E-value: 0.057
                  HHHHHHTTTSSSEEE CS
   EF-hand_1    4 eiFrefDkDgdGkId 18  
                   i +++D D++G ++
  KOO24996.1 1018 AIYQMVDMDNSGSMS 1032
                  5889********876 PP

>> EF-hand_6  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.8   0.1   2.8e-08   5.6e-05       3      27 ..     980    1004 ..     978    1009 .. 0.88
   2 ?   -2.4   0.0       3.2   6.4e+03       5      17 ..    1019    1031 ..    1017    1032 .. 0.81

  Alignments for each domain:
  == domain 1  score: 22.8 bits;  conditional E-value: 2.8e-08
   EF-hand_6    3 reaFklfDkdgdGkidaeElrkalr 27  
                  ++aF+ +Dkdg+G++d++E++ +l 
  KOO24996.1  980 MSAFRSLDKDGSGQLDMNEFKTMLV 1004
                  78********************996 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 3.2
   EF-hand_6    5 aFklfDkdgdGki 17  
                  ++++ D d++G+ 
  KOO24996.1 1019 IYQMVDMDNSGSM 1031
                  78899*****986 PP

>> Invasin_D3  Invasin, domain 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.3   0.0   2.9e-08   5.8e-05      22      83 ..     857     926 ..     852     933 .. 0.78

  Alignments for each domain:
  == domain 1  score: 23.3 bits;  conditional E-value: 2.9e-08
  Invasin_D3  22 stltvtlkDangnp.vsglt.vtfstt......sagtlsavtdngdGtytatLtattagtatitptvnGv 83 
                  tl vt++D+ gnp vsg + +t          + g  s+v+d+g+G y  +  +++ag++ + ++++G 
  KOO24996.1 857 CTLRVTARDKMGNPcVSGGAgITCGVVmqdqnvDLGLESTVEDEGNGKYACKWCGSRAGQYRVFVKMDGL 926
                 589************7774447777444344445556689***************************993 PP

>> EF-hand_5  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.4   0.1   6.1e-08   0.00012       4      25 .]     982    1003 ..     980    1004 .. 0.91
   2 ?   -0.2   0.1      0.41   8.2e+02       6      14 ..    1021    1029 ..    1021    1030 .. 0.89

  Alignments for each domain:
  == domain 1  score: 21.4 bits;  conditional E-value: 6.1e-08
                  HHHHH-SS-SSCE-HHHHHHHH CS
   EF-hand_5    4 tFqaiDlNgDGkIskeELktlv 25  
                  +F+ +D++g+G++++ E+kt++
  KOO24996.1  982 AFRSLDKDGSGQLDMNEFKTML 1003
                  5*******************64 PP

  == domain 2  score: -0.2 bits;  conditional E-value: 0.41
                  HHH-SS-SS CS
   EF-hand_5    6 qaiDlNgDG 14  
                  q++D++++G
  KOO24996.1 1021 QMVDMDNSG 1029
                  789*****9 PP

>> EF-hand_7  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.0       3.2   6.3e+03      41      53 ..     956     968 ..     944     978 .. 0.77
   2 !   21.4   0.1   1.3e-07   0.00026       4      62 ..     979    1032 ..     976    1034 .. 0.85

  Alignments for each domain:
  == domain 1  score: -2.3 bits;  conditional E-value: 3.2
   EF-hand_7  41 lsdeelellfkef 53 
                  ++eel +++ ++
  KOO24996.1 956 ADPEELAYWMGMI 968
                 47799*****998 PP

  == domain 2  score: 21.4 bits;  conditional E-value: 1.3e-07
   EF-hand_7    4 lkeaFkelDtdgdgyldkeellrllrkifqgagegsklsdeelellfkefDtdkdGvis 62  
                  ++ aF++lD+dg+g ld++e++ +l  +      g++ +d    ++ +++D d++G++s
  KOO24996.1  979 VMSAFRSLDKDGSGQLDMNEFKTMLVMF----NLGDV-PDYITHAIYQMVDMDNSGSMS 1032
                  5789******************999988....56666.5556669999*******9987 PP

>> DUF1492  Protein of unknown function (DUF1492)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.3    0.0002       0.4      16      62 ..     191     237 ..     181     277 .. 0.88

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.0002
     DUF1492  16 kkkkkddvyveLvvakediekktaeaikkklelqrlidklensdsrs 62 
                 ++k  d v ve  +a++ +e+   eai k  el + +++l+ +d  +
  KOO24996.1 191 AAKLADQVAVEAEAAQQRLERVVSEAIAKDAELAQALAELQRADDAA 237
                 567889**********************************9887654 PP

>> EF-hand_8  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.2   0.00025       0.5      30      53 ..     981    1004 ..     965    1005 .. 0.88
   2 ?   -2.3   0.0       2.1   4.3e+03      35      42 ..    1023    1030 ..    1016    1033 .. 0.83

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.00025
   EF-hand_8   30 ilfrefDtdgdGkisfeEFcvlle 53  
                  + fr +D dg+G ++ +EF  +l+
  KOO24996.1  981 SAFRSLDKDGSGQLDMNEFKTMLV 1004
                  56999***************9986 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 2.1
   EF-hand_8   35 fDtdgdGk 42  
                  +D+d++G 
  KOO24996.1 1023 VDMDNSGS 1030
                  7******7 PP

>> TF_Zn_Ribbon  TFIIB zinc-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.8   0.0     0.044        87      25      39 ..     880     894 ..     879     895 .. 0.91
   2 ?    7.2   0.1    0.0018       3.5      10      27 ..     895     912 ..     892     913 .. 0.90

  Alignments for each domain:
  == domain 1  score: 2.8 bits;  conditional E-value: 0.044
                   SSBEEEECCCCCCCH CS
  TF_Zn_Ribbon  25 CGlVlednsidegpe 39 
                   CG+V++d+ +d g e
    KOO24996.1 880 CGVVMQDQNVDLGLE 894
                   **********99876 PP

  == domain 2  score: 7.2 bits;  conditional E-value: 0.0018
                   ECHEETSTTCEEESSSSB CS
  TF_Zn_Ribbon  10 nlveDpergelvCtdCGl 27 
                   ++veD+ +g + C+ CG+
    KOO24996.1 895 STVEDEGNGKYACKWCGS 912
                   579**************6 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1040 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2469  (0.13771); expected 358.6 (0.02)
Passed bias filter:                      501  (0.0279436); expected 358.6 (0.02)
Passed Vit filter:                        61  (0.00340231); expected 17.9 (0.001)
Passed Fwd filter:                        17  (0.000948185); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.99u 0.29s 00:00:01.28 Elapsed: 00:00:00.50
# Mc/sec: 6253.83
//
Query:       KOO24997.1  [L=1760]
Description: voltage-dependent calcium channel type a subunit alpha-1-like protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
   4.9e-191  631.8  39.4    1.7e-52  178.1   4.1    4.1  4  Ion_trans    Ion transport protein
    2.4e-11   43.0  43.3    4.1e-07   29.1   2.8    7.5  8  PKD_channel  Polycystin cation channel
    9.8e-11   41.3   0.1    2.5e-10   39.9   0.1    1.7  1  GPHH         Voltage-dependent L-type calcium channel, IQ-ass
    1.6e-07   31.4   1.1     0.0023   18.2   0.1    3.1  3  Kelch_3      Galactose oxidase, central domain
    6.4e-07   29.1   4.8     0.0039   17.1   0.5    3.0  3  Kelch_2      Kelch motif
    2.6e-06   27.3   3.4    0.00089   19.2   0.5    3.1  3  Kelch_4      Galactose oxidase, central domain
    8.2e-05   22.1   0.7      0.026   14.1   0.4    2.6  2  Kelch_1      Kelch motif
    9.8e-05   21.8  12.5      0.023   14.5   0.1    3.6  3  IQ           IQ calmodulin-binding motif
     0.0011   19.2   0.3      0.014   15.7   0.1    2.5  2  Kelch_6      Kelch motif


Domain annotation for each model (and alignments):
>> Ion_trans  Ion transport protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  134.9   0.0   1.3e-42   2.6e-39      38     243 ..       2     278 ..       1     280 [. 0.91
   2 !  169.5  13.6   3.7e-53   7.4e-50       2     239 ..     423     653 ..     422     659 .. 0.93
   3 !  178.1   4.1   8.3e-56   1.7e-52       3     242 ..     766    1035 ..     764    1038 .. 0.93
   4 !  157.1   8.9   2.2e-49   4.3e-46       1     238 [.    1084    1334 ..    1084    1339 .. 0.94

  Alignments for each domain:
  == domain 1  score: 134.9 bits;  conditional E-value: 1.3e-42
                 HHHHHHHHHHHHHHHHHHHHTH.HHHHHHCHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGGGGHHHCHSHHHHHHHHHHHHHHHHHHHHHH CS
   Ion_trans  38 lelvftaiftlemllkilalgl.likkrYlrdpwnilDflvvlpsllslvlseesllllsvlrlfrvlrllklisrleglrtlvtalirsvkdllnvll 135
                 lel ft++ft+e+ +k+la+g+   +++Yl d wn+lD++vvl++++ ++    sl +ls++r +r lr+l++i++l+glr   ++l++s+++l +v++
  KOO24997.1   2 LELWFTILFTIELSIKVLAMGFaGREGTYLADGWNRLDCTVVLLGWAPYIFP--SLANLSAIRSLRALRPLRTINQLPGLRRQAKTLFDSLPKLSDVAI 98 
                 7899******************888899*******************99663..69******************************************* PP

                 HHHHHHHHHHHHHHHHHTTSCCCC........................................................................... CS
   Ion_trans 136 lllvvlfifaligvqlfkgklrek........................................................................... 159
                 l +++l +f+++g+qlfkg lr +                                                                           
  KOO24997.1  99 LGVFMLALFGVLGLQLFKGALRSRcyalspppppapllhlvngvpidvpapspptasvaaqqalldaaalgsrarlaapvgvapldeddfvcsdggvpg 197
                 ***********************9**********************************************99999999999999998888888877776 PP

                 ..CC......SCCSTSSSTTTSSSSSSHHHHHHHHHHHHTTSSHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
   Ion_trans 160 ..ne......caktwenpnngntnFdnfftallwlfrlmttegwgdilyatldekskvaliyfvifiilgsflllNlliaviadnfqelter 243
                   +       c + + np +g+ +Fd++  a +++f+ +  e    ++ ++ ++       yf++++ lgsf++lNl++av  d++ e+++ 
  KOO24997.1 198 aqGTcepgevCLYYGYNPAYGTESFDSITAACMTIFQYLMVE----VTGPFASG-------YFITLVALGSFYTLNLFLAVLWDTYCEQQDA 278
                 6600555668***************************55544....55555555.......6************************999876 PP

  == domain 2  score: 169.5 bits;  conditional E-value: 3.7e-53
                 HHHHHHHHHHHHHHHHHHHCCCSSSSHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHCHSHHHHHHHHHHHHHHHHH......HHHHHHHHH CS
   Ion_trans   2 svfelfilllillncvflaletyfpedelektileilelvftaiftlemllkilalgllikkrYlrdpwnilDflvvlpsllsl......vlseeslll 94 
                 ++f++fi+llilln+v+++le+y++  +l    l  l+l+ t  ft em+lk+la g+     Y++d +n++D +vv++sl++l      +      ++
  KOO24997.1 423 PSFQSFIVLLILLNTVAMMLEQYPMDGTLL-AQLSDLNLLLTLAFTAEMVLKLLADGC---AGYFGDAFNRFDAVVVTLSLIDLaivyydI---DLGVN 514
                 78***********************96666.9999***********************...*********************997765531...569** PP

                 HHHHHHHGGGGGGHHHCHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCCCCSCCSTSSSTTTSSSSSSHHHHHHHHHHHHTTS CS
   Ion_trans  95 lsvlrlfrvlrllklisrleglrtlvtalirsvkdllnvlllllvvlfifaligvqlfkgklreknecaktwenpnngntnFdnfftallwlfrlmtte 193
                 +svlr++r++r++kl +++ +lr ++  +++s+ +l n++ll+l+++f+fal+g+++f+g +      + +  +   ++tnFd++++a+l++f++ ++e
  KOO24997.1 515 VSVLRAMRLMRVFKLARSWATLRRVMEGILNSIGQLANLFLLMLLLIFVFALFGMHVFGGAFT----PEAGFDE--PPRTNFDTIGDAMLTVFVVVSGE 607
                 ***************************************************************....3334444..59********************* PP

                 SHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
   Ion_trans 194 gwgdilyatldekskvaliyfvifiilgsflllNlliaviadnfqe 239
                 +w+d+ +    + + ++  yfv+++i g++++lNl++a+    f+ 
  KOO24997.1 608 NWNDVWSSSAAAVGYWCAPYFVLLVITGNYVVLNLFVAILLGGFST 653
                 ***************************************9988875 PP

  == domain 3  score: 178.1 bits;  conditional E-value: 8.3e-56
                  HHHHHHHHHHHHHHHHHHCCCSSSSHHHHC.HHHHHHHHHHHHHHHHHHHHHHHHHTH.HHHHHHCHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
   Ion_trans    3 vfelfilllillncvflaletyfpedelek.tileilelvftaiftlemllkilalgl.likkrYlrdpwnilDflvvlpsllslvlseesllllsv 97  
                  +fe  i++ i+++cv++++e++    ++e    le ++l+ ta+ft+e++lk+la+gl + +  Yl++ w  lD ++v  sllsl ++   +++ls 
  KOO24997.1  766 SFEGAIVMWIVISCVAMTFESCTLDPSSELaINLEKINLLATAVFTVELVLKVLAFGLlFTPNAYLKSGWHQLDATIVAASLLSLLAQ--DNGNLST 860 
                  79999********************88888999****************************************************774..49***** PP

                  HHHHGGGGGGHHHCHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCC......................CCSCCSTSSSTTT CS
   Ion_trans   98 lrlfrvlrllklisrleglrtlvtalirsvkdllnvlllllvvlfifaligvqlfkgklrek......................necaktwenpnng 172 
                  lrl+rvlr+l+li ++++lr++v  li+++++ +nv+l++ ++ ++f+++gvqlf+g++  +                      ++    w+np   
  KOO24997.1  861 LRLLRVLRPLRLIAKFGNLRVVVDLLIKTIPACVNVMLVVGLFSVVFGILGVQLFAGTFASCrqaelseagevvaldaaserscVRAGGLWANP--A 955 
                  **************************************************************99998888777777766544332245567777..7 PP

                  SSSSSSHHHHHHHHHHHHTTSSHHHHHHHHHHHS..........HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
   Ion_trans  173 ntnFdnfftallwlfrlmttegwgdilyatldek..........skvaliyfvifiilgsflllNlliaviadnfqelte 242 
                    +Fdn++ ++l lf++ t+egw+d++y+t+d+           s    +++v++ ++g+++l N++++vi+d+f+++++
  KOO24997.1  956 LGSFDNIGASMLLLFESSTMEGWPDVMYYTIDATapgraperntSRAQGLFMVAWTVVGGMFLTNVFVGVIVDQFAYIKK 1035
                  889*****************************************9*******************************9986 PP

  == domain 4  score: 157.1 bits;  conditional E-value: 2.2e-49
                  SHHHHHHHHHHHHHHHHHHHCCCSSSSHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHCHSHHHHHHHHHHHHHHHHHHHHH.....HHH CS
   Ion_trans    1 ssvfelfilllillncvflaletyfpedelektileilelvftaiftlemllkilalgllikkrYlrdpwnilDflvvlpsllslvlse.....esl 92  
                  ++ fel+++ +il n+++l l+  ++++e+    l++ +lv+t +f le++ ki+al     ++Y+rdpwn++Df+vv++sll++v         + 
  KOO24997.1 1084 HKRFELVVFGVILFNTCLLGLDGFDDSSETL-AKLQFGNLVCTLLFGLEAAAKIYALEA---GEYFRDPWNVFDFFVVSFSLLDIVEFIgasigFNP 1176
                  678******************8888886666.9***********************999...*********************99443345566789 PP

                  HHHHHHHHHGGGGGGHHHCHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCCCCSCCSTSSSTTTSSSSSSHHHHHHHHHHH CS
   Ion_trans   93 lllsvlrlfrvlrllklisrleglrtlvtalirsvkdllnvlllllvvlfifaligvqlfkgklreknecaktwenpnngntnFdnfftallwlfrl 189 
                  +ll++lr++rvlr+++++++ +glr+l+t+l+ s+++l n+  +++++l +f+++g+ lf+   +          n  n n nF nf+ta+l+++r+
  KOO24997.1 1177 SLLRALRTARVLRIIRTVKSAKGLRVLLTTLLLSLPALANIGAIFFILLTLFSILGMRLFGHIAY---------GNYLNHNANFCNFPTAMLTMLRC 1264
                  ************************************************************66666.........78888899*************** PP

                  HTTSSHHHHHHHHHHHS.....................HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
   Ion_trans  190 mttegwgdilyatldek.....................skvaliyfvifiilgsflllNlliaviadnfq 238 
                   t+e w+ ++++ +                        +  ++++f++f i +sf++lN++ia+i + + 
  KOO24997.1 1265 STGESWNGLMHDAMIMPgvvysdvdvqhcspdegncgnPLASMLFFIAFQISASFIILNMMIALILEEYG 1334
                  **************99999**********************************************99986 PP

>> PKD_channel  Polycystin cation channel
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   0.0       0.2     4e+02     236     257 ..      25      47 ..       2      68 .. 0.66
   2 ?   -3.4   0.0       1.4   2.9e+03     308     354 ..      65     111 ..      48     115 .. 0.67
   3 !    5.0   0.5    0.0039       7.8     396     424 ..     245     273 ..     219     275 .. 0.75
   4 !    4.6   0.1    0.0054        11     215     263 ..     456     505 ..     415     515 .. 0.79
   5 !   19.5   3.5   1.6e-07   0.00032     306     423 ..     517     651 ..     506     653 .. 0.68
   6 ?    1.7   4.5     0.041        82     216     359 ..     772     916 ..     764     924 .. 0.62
   7 ?    3.2   0.1     0.014        28     215     263 ..    1118    1167 ..    1086    1174 .. 0.80
   8 !   29.1   2.8     2e-10   4.1e-07     309     423 ..    1187    1333 ..    1177    1336 .. 0.86

  Alignments for each domain:
  == domain 1  score: -0.6 bits;  conditional E-value: 0.2
                  --.-------HHHHHHHHHHHHH CS
  PKD_channel 236 er.asylrsvwnlldlaivvlsv 257
                   r   yl + wn ld+ +v+l  
   KOO24997.1  25 GReGTYLADGWNRLDCTVVLLGW 47 
                  233589************99865 PP

  == domain 2  score: -3.4 bits;  conditional E-value: 1.4
                  HHHGGGGG------------------------HHHHHHHHHHHHHHH CS
  PKD_channel 308 ttlkllkvlrfnktlslltktlaralkdvlgfalvivilflayaqlg 354
                    l+ l+ ++  + l+   ktl+++l+++  +a++ v ++  +++lg
   KOO24997.1  65 RALRPLRTINQLPGLRRQAKTLFDSLPKLSDVAILGVFMLALFGVLG 111
                  344445555555556667899*****999999988766666666665 PP

  == domain 3  score: 5.0 bits;  conditional E-value: 0.0039
                  HHHHHHHHHHHHHHHHHHHHHHHHHT-XX CS
  PKD_channel 396 Gpllllalvflvifillnlflaiindsye 424
                     ++++lv+l  f  lnlfla++ d+y 
   KOO24997.1 245 ASGYFITLVALGSFYTLNLFLAVLWDTYC 273
                  44589**********************96 PP

  == domain 4  score: 4.6 bits;  conditional E-value: 0.0054
                  HHHHHHHHHHHHHHHH-------.-------HHHHHHHHHHHHHHHHHHH CS
  PKD_channel 215 evvfvvfvlyfvveeilkirker.asylrsvwnlldlaivvlsvvlivla 263
                  + + +++ l+f+ e++lk+  ++ a y+ +++n  d+++v ls++ + ++
   KOO24997.1 456 SDLNLLLTLAFTAEMVLKLLADGcAGYFGDAFNRFDAVVVTLSLIDLAIV 505
                  44568899**********************************99866554 PP

  == domain 5  score: 19.5 bits;  conditional E-value: 1.6e-07
                  HHHHHGGGGG-------------...-----------HHHHHHHHHHHHHHHHHHSSSS...........-STTSSHHHHHHHHHHHHTT---HHHH. CS
  PKD_channel 306 flttlkllkvlrfnktlslltkt...laralkdvlgfalvivilflayaqlgvllfGtq...........asnfsnlvksiltlfrlilgdfqytel. 388
                  +l  ++l++v ++++ +  l ++   + +++ +++ ++l++++l++++a +g+ +fG               nf ++  ++lt+f  +++  +++++ 
   KOO24997.1 517 VLRAMRLMRVFKLARSWATLRRVmegILNSIGQLANLFLLMLLLIFVFALFGMHVFGGAftpeagfdeppRTNFDTIGDAMLTVFV-VVSGENWNDVw 613
                  34455666666666665555555111678888899999*******************7522222222222479***********65.56677888662 PP

                  HHH-TTHHHHHHHHHHHHHH...HHHHHHHHHHHHT-X CS
  PKD_channel 389 esgnrvLGpllllalvflvi...fillnlflaiindsy 423
                   s     G  +   +v+lvi   +++lnlf+ai+   +
   KOO24997.1 614 SSSAAAVGYWCAPYFVLLVItgnYVVLNLFVAILLGGF 651
                  4555677777777777766644489********98665 PP

  == domain 6  score: 1.7 bits;  conditional E-value: 0.041
                  HHHHHHHHHHHHHHH------------.--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-SSS----HHHHHHHHHHHHHHHHHHHHHHHGG CS
  PKD_channel 216 vvfvvfvlyfvveeilkirkerasylr.svwnlldlaivvlsvvlivlailrevlakkllkkveaekeefldFrevaqldqllriilavlvflttlkl 312
                  v+++v+ ++ +  e +++ ++ + +++ ++ nll  a++ + +vl vla+   ++ ++ lk+  ++ ++ +    + +l  + +  l  l +l +l+ 
   KOO24997.1 772 VMWIVISCVAMTFESCTLDPSSELAINlEKINLLATAVFTVELVLKVLAFGLLFTPNAYLKSGWHQLDATIVAASLLSLLAQDNGNLSTLRLLRVLRP 869
                  56666666666667777777764444447777777777777777777777777777777777765555555444444444444444444444555555 PP

                  GGG------------------------HHHHHHHHHHHHHHHHHHSS CS
  PKD_channel 313 lkvlrfnktlslltktlaralkdvlgfalvivilflayaqlgvllfG 359
                  l+++  + +l+++   l + +++ + + lv+ ++ +++++lgv lf 
   KOO24997.1 870 LRLIAKFGNLRVVVDLLIKTIPACVNVMLVVGLFSVVFGILGVQLFA 916
                  55555555556666677777777788888888888888888877764 PP

  == domain 7  score: 3.2 bits;  conditional E-value: 0.014
                   HHHHHHHHHHHHHHHH-------.-------HHHHHHHHHHHHHHHHHHH CS
  PKD_channel  215 evvfvvfvlyfvveeilkirker.asylrsvwnlldlaivvlsvvlivla 263 
                   ++  +v  l+f  e + ki      +y+r+ wn+ d+++v +s++ iv +
   KOO24997.1 1118 QFGNLVCTLLFGLEAAAKIYALEaGEYFRDPWNVFDFFVVSFSLLDIVEF 1167
                   55557788888888888887766589*****************9988865 PP

  == domain 8  score: 29.1 bits;  conditional E-value: 2e-10
                   HHGGGGG------------------------HHHHHHHHHHHHHHHHHHSS........SS-STTSSHHHHHHHHHHHHTT---HH.......... CS
  PKD_channel  309 tlkllkvlrfnktlslltktlaralkdvlgfalvivilflayaqlgvllfG........tqasnfsnlvksiltlfrlilgdfqyt.......... 386 
                   +l++++ ++ +k l++l +tl  +l++++ +  +++il+  + +lg+ lfG        ++ +nf n+ +++lt++r+     +++          
   KOO24997.1 1187 VLRIIRTVKSAKGLRVLLTTLLLSLPALANIGAIFFILLTLFSILGMRLFGhiaygnylNHNANFCNFPTAMLTMLRCST-GESWNglmhdamimp 1281
                   46777777777888999**************************99999998666666666889************77554.556777999999999 PP

                   ...............HHHHH-TTHHHHHHHHHHHHHHHHHHHHHHHHHHT-X CS
  PKD_channel  387 ...............elesgnrvLGpllllalvflvifillnlflaiindsy 423 
                                  e + gn + ++l+++a+++   fi+ln+++a+i ++y
   KOO24997.1 1282 gvvysdvdvqhcspdEGNCGNPLASMLFFIAFQISASFIILNMMIALILEEY 1333
                   99999**999999987777888999*************************99 PP

>> GPHH  Voltage-dependent L-type calcium channel, IQ-associated
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.9   0.1   1.3e-13   2.5e-10       2      36 ..    1352    1386 ..    1351    1394 .. 0.95

  Alignments for each domain:
  == domain 1  score: 39.9 bits;  conditional E-value: 1.3e-13
        GPHH    2 FvrvWaeyDPeAtgrikvqdmyellrrlspPLGfG 36  
                  Fv++W ++DP Atgr++v++++ l+rrl+pPLG+ 
  KOO24997.1 1352 FVEAWQQFDPYATGRMHVRHLHALIRRLPPPLGLD 1386
                  9********************************95 PP

>> Kelch_3  Galactose oxidase, central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   0.0       6.9   1.4e+04      31      43 ..     681     693 ..     673     694 .. 0.87
   2 !   18.2   0.1   1.1e-06    0.0023       1      46 [.    1536    1583 ..    1536    1584 .. 0.90
   3 !   10.7   0.0   0.00025       0.5       2      38 ..    1589    1627 ..    1588    1633 .. 0.89

  Alignments for each domain:
  == domain 1  score: -3.4 bits;  conditional E-value: 6.9
     Kelch_3  31 WaeiaslppaRag 43 
                 W+++++ pp+ a+
  KOO24997.1 681 WRRLGREPPPGAH 693
                 99******99876 PP

  == domain 2  score: 18.2 bits;  conditional E-value: 1.1e-06
     Kelch_3    1 gdrlyifGGlgddgqdrlndvyvydldtntWa.eiaslpp...aRaghaa 46  
                  g+rl++fGG+    +  l d++++++++++W  ++ + p    +R+gh+a
  KOO24997.1 1536 GGRLFVFGGRA--EGRMLRDFWEFSFNAGYWVdQSHTVPVrmrPRCGHTA 1583
                  689********..9******************87777766778*****97 PP

  == domain 3  score: 10.7 bits;  conditional E-value: 0.00025
     Kelch_3    2 drlyifGGlgddgqdrlndvyvydldtntWaei....aslp 38  
                   r++i+GG +  g+ +l dv++  l+  +W+++    ++lp
  KOO24997.1 1589 SRMLIVGGHD--GEHFLADVWECELNGLYWRQVgfsaGELP 1627
                  68********..********************988777777 PP

>> Kelch_2  Kelch motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.0       5.3     1e+04      15      26 ..     570     578 ..     569     583 .. 0.69
   2 !   17.1   0.5     2e-06    0.0039       1      42 [.    1526    1564 ..    1526    1568 .. 0.81
   3 !   12.8   0.1   4.4e-05     0.087       2      45 ..    1578    1619 ..    1577    1620 .. 0.88

  Alignments for each domain:
  == domain 1  score: -3.3 bits;  conditional E-value: 5.3
     Kelch_2  15 yvvGGahtdnpn 26 
                 +v+GGa    ++
  KOO24997.1 570 HVFGGA---FTP 578
                 89****...444 PP

  == domain 2  score: 17.1 bits;  conditional E-value: 2e-06
     Kelch_2    1 rrgghsssvpggkiyvvGGahtdnpnlsssdvhvldlekhvW 42  
                  +r+ hs++ +gg+++v+GG+     ++  +d++ + ++   W
  KOO24997.1 1526 GRVQHSTVNWGGRLFVFGGR---AEGRMLRDFWEFSFNAGYW 1564
                  599*****************...7777777777777776666 PP

  == domain 3  score: 12.8 bits;  conditional E-value: 4.4e-05
     Kelch_2    2 rgghsss.vpggkiyvvGGahtdnpnlsssdvhvldlekhvWeev 45  
                  r+gh++  ++ +++++vGG+   ++ ++  dv+ + l++  W+ v
  KOO24997.1 1578 RCGHTAMiTGTSRMLIVGGH---DGEHFLADVWECELNGLYWRQV 1619
                  66666666************...*******************976 PP

>> Kelch_4  Galactose oxidase, central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.6   0.0       6.1   1.2e+04      17      30 ..     571     584 ..     571     591 .. 0.75
   2 !   19.2   0.5   4.5e-07   0.00089       1      44 [.    1526    1568 ..    1526    1573 .. 0.88
   3 !    7.6   0.0    0.0018       3.7       1      44 [.    1577    1619 ..    1577    1628 .. 0.86

  Alignments for each domain:
  == domain 1  score: -3.6 bits;  conditional E-value: 6.1
     Kelch_4  17 lfGGrgedgtllnd 30 
                 +fGG+ ++ + +++
  KOO24997.1 571 VFGGAFTPEAGFDE 584
                 7****999766665 PP

  == domain 2  score: 19.2 bits;  conditional E-value: 4.5e-07
     Kelch_4    1 pRaghsatsipdgtiylfGGrgedgtllndlylldlstntW.rrl 44  
                  +R+ hs++ ++ g++++fGGr e g  l d + +++  + W  ++
  KOO24997.1 1526 GRVQHSTVNWG-GRLFVFGGRAE-GRMLRDFWEFSFNAGYWvDQS 1568
                  599*******6.***********.69***************6555 PP

  == domain 3  score: 7.6 bits;  conditional E-value: 0.0018
     Kelch_4    1 pRaghsatsipdgtiylfGGrgedgtllndlylldlstntWrrl 44  
                  pR+gh+a  ++  +  ++GG  ++  +l+d++   l    Wr++
  KOO24997.1 1577 PRCGHTAMITGTSRMLIVGGHDGE-HFLADVWECELNGLYWRQV 1619
                  9**********************9.9******888888888888 PP

>> Kelch_1  Kelch motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.1   0.4   1.3e-05     0.026       2      40 ..    1527    1565 ..    1526    1568 .. 0.93
   2 !    5.8   0.0    0.0053        11       4      30 ..    1581    1607 ..    1577    1608 .. 0.76

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 1.3e-05
                  BBSEEEEEETTEEEEEEEBCSSSBEEEEEEEETTTTEEE CS
     Kelch_1    2 ragagavvvggkiYviGGsdggnalssvevyDpetntWr 40  
                  r  ++ v  gg+++v+GG+ +g+ l++++ +++  + W 
  KOO24997.1 1527 RVQHSTVNWGGRLFVFGGRAEGRMLRDFWEFSFNAGYWV 1565
                  899*****************************9999996 PP

  == domain 2  score: 5.8 bits;  conditional E-value: 0.0053
                  SEEEEEETTEEEEEEEBCSSSBEEEEE CS
     Kelch_1    4 gagavvvggkiYviGGsdggnalssve 30  
                  + ++ +   ++ ++GG+dg  +l +v+
  KOO24997.1 1581 HTAMITGTSRMLIVGGHDGEHFLADVW 1607
                  44445555689***************9 PP

>> IQ  IQ calmodulin-binding motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.1   0.2      0.46   9.2e+02       3      11 ..    1484    1492 ..    1483    1492 .. 0.92
   2 !   11.6   3.0   9.9e-05       0.2       2      18 ..    1670    1686 ..    1669    1688 .. 0.91
   3 !   14.5   0.1   1.1e-05     0.023       2      17 ..    1700    1715 ..    1699    1717 .. 0.94

  Alignments for each domain:
  == domain 1  score: 0.1 bits;  conditional E-value: 0.46
                  HHHHHHHHH CS
          IQ    3 aaikIQaaw 11  
                  a+++IQ++w
  KOO24997.1 1484 AVCTIQRRW 1492
                  899*****9 PP

  == domain 2  score: 11.6 bits;  conditional E-value: 9.9e-05
                  HHHHHHHHHHHHHHHHH CS
          IQ    2 kaaikIQaawRGylaRk 18  
                  +a+i+IQa+ RG +aR 
  KOO24997.1 1670 AAIITIQAHARGRQARV 1686
                  79*************95 PP

  == domain 3  score: 14.5 bits;  conditional E-value: 1.1e-05
                  HHHHHHHHHHHHHHHH CS
          IQ    2 kaaikIQaawRGylaR 17  
                  +aa+  Qa wRG+l+R
  KOO24997.1 1700 DAATYVQAIWRGFLVR 1715
                  69*************9 PP

>> Kelch_6  Kelch motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.1     7e-06     0.014       2      40 ..    1527    1564 ..    1527    1566 .. 0.87
   2 ?    0.3   0.0      0.48   9.5e+02       1      44 [.    1577    1620 ..    1577    1631 .. 0.85

  Alignments for each domain:
  == domain 1  score: 15.7 bits;  conditional E-value: 7e-06
     Kelch_6    2 raghslvsvggkiYifGGytdsspylnkvwvydpetksW 40  
                  r++hs+v +gg++++fGG+   +  l+++w +++  + W
  KOO24997.1 1527 RVQHSTVNWGGRLFVFGGRAE-GRMLRDFWEFSFNAGYW 1564
                  789****************99.78888888888877777 PP

  == domain 2  score: 0.3 bits;  conditional E-value: 0.48
     Kelch_6    1 praghsl.vsvggkiYifGGytdsspylnkvwvydpetksWeqlp 44  
                  pr+gh++ ++  ++  i+GG ++ + +l +vw + +    W+q++
  KOO24997.1 1577 PRCGHTAmITGTSRMLIVGGHDG-EHFLADVWECELNGLYWRQVG 1620
                  6999999788889********99.888999998888888888876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1760 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       766  (0.0427241); expected 358.6 (0.02)
Passed bias filter:                      411  (0.0229238); expected 358.6 (0.02)
Passed Vit filter:                        53  (0.0029561); expected 17.9 (0.001)
Passed Fwd filter:                        13  (0.000725082); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 1.05u 0.33s 00:00:01.38 Elapsed: 00:00:00.51
# Mc/sec: 10408.40
//
Query:       KOO24998.1  [L=391]
Description: chaperone protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      2e-25   88.7   3.8    2.9e-25   88.1   3.8    1.3  1  DnaJ      DnaJ domain
    2.1e-05   24.3   0.1     0.0024   17.8   0.0    3.0  3  DUF4314   Domain of unknown function (DUF4314)
  ------ inclusion threshold ------
      0.067   13.1   5.7        2.8    7.9   0.1    2.7  2  YajC      Preprotein translocase subunit
       0.23   11.5   1.1        1.3    9.0   0.3    2.6  3  KOW       KOW motif


Domain annotation for each model (and alignments):
>> DnaJ  DnaJ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   88.1   3.8   6.6e-29   2.9e-25       1      63 []      52     115 ..      52     115 .. 0.98

  Alignments for each domain:
  == domain 1  score: 88.1 bits;  conditional E-value: 6.6e-29
                 HHHHHHTSSTTG-HHHHHHHHHHHHHHHSTTTSCCHH.HHHHHHHHHHHHHHHHTSHHHHHHHH CS
        DnaJ   1 dyYeiLgvskdasedeIkkaYrklalkyHPDknpkdp.eaeekFkeineAyevLsdpekRkqYD 63 
                 dyYe+Lg++k+as+++Ik+aY+k+a ++HPDkn +d+  aeekFke+neAy+vLsd++kR+ YD
  KOO24998.1  52 DYYEVLGIDKSASNADIKRAYKKQAARHHPDKNLSDKaGAEEKFKEVNEAYNVLSDEQKRAVYD 115
                 8********************************88888*************************9 PP

>> DUF4314  Domain of unknown function (DUF4314)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.3   0.0      0.14   6.5e+02      12      42 ..     231     259 ..     220     263 .. 0.77
   2 ?    1.7   0.0     0.055   2.5e+02      17      45 ..     288     314 ..     274     319 .. 0.81
   3 !   17.8   0.0   5.3e-07    0.0024      13      59 ..     336     382 ..     334     388 .. 0.95

  Alignments for each domain:
  == domain 1  score: 0.3 bits;  conditional E-value: 0.14
     DUF4314  12 YpkGtrveLvsmddeqaplppGtkGtVkgVD 42 
                  p+G+ v Lvs++  ++   +G +  V + D
  KOO24998.1 231 VPSGSAVVLVSLRSAPQL--NGARARVVHFD 259
                 599********9998764..88888887777 PP

  == domain 2  score: 1.7 bits;  conditional E-value: 0.055
     DUF4314  17 rveLvsmddeqaplppGtkGtVkgVDDiG 45 
                 +veL+ ++ +++   +G++G ++g DD++
  KOO24998.1 288 EVELTGVSSQPQ--LNGQSGRIEGFDDAS 314
                 577887777755..49***********85 PP

  == domain 3  score: 17.8 bits;  conditional E-value: 5.3e-07
     DUF4314  13 pkGtrveLvsmddeqaplppGtkGtVkgVD.DiGtihvkWdnGssLgl 59 
                 p+G+rv+Lvs  ++ a   +G  GtV +VD D G  +v+  +Gs+L++
  KOO24998.1 336 PPGARVKLVSFVGKGAT-YNGLVGTVVSVDrDEGRYIVQVPEGSRLSV 382
                 99************999.************9***************98 PP

>> YajC  Preprotein translocase subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.8   2.0    0.0027        12      19      45 ..     215     241 ..     212     285 .. 0.74
   2 ?    7.9   0.1   0.00062       2.8      43      73 ..     352     382 ..     349     388 .. 0.71

  Alignments for each domain:
  == domain 1  score: 5.8 bits;  conditional E-value: 0.0027
        YajC  19 rpqqkkqkehkemlasLkkGdeVvtig 45 
                 r qq++q+++++  + +  G+ Vv+ +
  KOO24998.1 215 RYQQRQQQQQQQQADVVPSGSAVVLVS 241
                 6799999999999999999**999875 PP

  == domain 2  score: 7.9 bits;  conditional E-value: 0.00062
        YajC  43 tigGivGkvvkvddde..vtveigesagvkikv 73 
                 t  G+vG+vv+vd de   +v++   +g ++ v
  KOO24998.1 352 TYNGLVGTVVSVDRDEgrYIVQVP--EGSRLSV 382
                 778**********54445788883..2556555 PP

>> KOW  KOW motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.0      0.55   2.5e+03      14      26 ..     250     262 ..     249     270 .. 0.74
   2 ?   -2.5   0.0       1.3   5.9e+03      14      27 ..     302     319 ..     302     322 .. 0.66
   3 ?    9.0   0.3    0.0003       1.3      11      28 ..     352     371 ..     350     374 .. 0.80

  Alignments for each domain:
  == domain 1  score: -1.3 bits;  conditional E-value: 0.55
                 TCEEEEEEEETTT CS
         KOW  14 GktGkVvkvdqhk 26 
                 G+ ++Vv+ d   
  KOO24998.1 250 GARARVVHFDARQ 262
                 8899999988765 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 1.3
                 TCEEEEEEEETTT....T CS
         KOW  14 GktGkVvkvdqhk....v 27 
                 G+ G+++  d+      v
  KOO24998.1 302 GQSGRIEGFDDASgrylV 319
                 788888888876555444 PP

  == domain 3  score: 9.0 bits;  conditional E-value: 0.0003
                 TTTTCEEEEEEEETTT..TE CS
         KOW  11 phkGktGkVvkvdqhk..vr 28 
                 ++ G +G+Vv+vd++   ++
  KOO24998.1 352 TYNGLVGTVVSVDRDEgrYI 371
                 6889**********986644 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (391 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1106  (0.0616878); expected 358.6 (0.02)
Passed bias filter:                      670  (0.0373696); expected 358.6 (0.02)
Passed Vit filter:                        59  (0.00329076); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.53u 0.27s 00:00:00.80 Elapsed: 00:00:00.42
# Mc/sec: 2816.51
//
Query:       KOO24999.1  [L=338]
Description: wd repeat-containing protein 54-like protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
     0.0088   16.3   0.0       0.22   11.8   0.0    2.6  2  ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain


Domain annotation for each model (and alignments):
>> ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.2   0.0     0.026   4.7e+02      36      76 ..      60     101 ..      50     114 .. 0.70
   2 !   11.8   0.0   1.2e-05      0.22       9      80 ..     180     256 ..     176     265 .. 0.75

  Alignments for each domain:
  == domain 1  score: 1.2 bits;  conditional E-value: 0.026
  ANAPC4_WD40  36 kedsevrsLaWk..pdgklLavaysdgevrlldaesgkvvhsl 76 
                   ++ ++++++W   + g+lL+va    +++l+    ++++h +
   KOO24999.1  60 PDGAQIQQIRWVqlNAGELLVVAS-MRSLQLYTPDGKRLLHVV 101
                  567889999996224678887764.445666666666666655 PP

  == domain 2  score: 11.8 bits;  conditional E-value: 1.2e-05
  ANAPC4_WD40   9 LiAlatedgellvfRlngqrvwtl.......eedkedsevrsLaWkpdgklLavaysdgevrlldaesgkvvhslsvks 80 
                  L+  a ++g+++v+ l+    w+        ++d++     + + +  g+ L  ays g+vr++d+  g +  s+ +++
   KOO24999.1 180 LVCSADAQGDVHVHVLEADGTWSHsvtfpfmTSDETP--ALCTSLRLRGQRLYCAYSTGHVRIFDVMAGLLSVSVAAHA 256
                  5666778888888888888888888888754444444..4455557789*****************9998877777665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (338 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       461  (0.0257125); expected 358.6 (0.02)
Passed bias filter:                      389  (0.0216967); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.25s 00:00:00.70 Elapsed: 00:00:00.41
# Mc/sec: 2478.97
//
Query:       KOO25000.1  [L=483]
Description: phosphatidylinositol-4-phosphate 5-kinase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.2e-61  208.3   0.1    3.4e-41  141.3   0.4    2.7  2  PIP5K         Phosphatidylinositol-4-phosphate 5-Kinase
    5.6e-21   72.5   4.4    1.8e-05   24.0   0.1    4.7  4  EF-hand_1     EF hand
    1.5e-20   73.4   5.8    2.3e-09   37.6   0.1    3.0  2  EF-hand_7     EF-hand domain pair
    1.8e-18   66.1   6.5    6.4e-06   25.9   0.1    4.6  5  EF-hand_8     EF-hand domain pair
    5.4e-18   63.3   6.1     0.0003   20.5   0.1    4.6  4  EF-hand_6     EF-hand domain
    2.2e-15   55.3   9.4    0.00013   21.3   0.2    4.5  4  EF-hand_5     EF hand
  ------ inclusion threshold ------
      0.045   14.1   0.0          5    7.5   0.0    2.8  2  SPARC_Ca_bdg  Secreted protein acidic and rich in cysteine Ca


Domain annotation for each model (and alignments):
>> PIP5K  Phosphatidylinositol-4-phosphate 5-Kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  141.3   0.4   1.3e-44   3.4e-41       4     112 ..     213     326 ..     212     331 .. 0.94
   2 !   63.8   0.0   5.7e-21   1.4e-17     142     273 ..     330     480 ..     325     481 .. 0.75

  Alignments for each domain:
  == domain 1  score: 141.3 bits;  conditional E-value: 1.3e-44
                 -EEEE----SSS--EEEETTSSEEEEEE-HHHHHHHHHHHHHHHHHHTT-TT--S--EEEEEEEE.E.....TTEEEEEEEEE-SS-TTS--SEEEEE- CS
       PIP5K   4 alkelsseGkSgsffylteDkkfiiKtitksevkflrkllpeYyehvkenpnsLltrfyglhrvklk.....ggkkvrfvVmenlfptdkeiheryDLK 97 
                 +l+el seGkSgsffy+++D++++iKti+++e + l ++lp+Y+ hv+++p++Ll+rf+g hr+ l+     + +kv+f+Vm n+f+t++ ih+ryDLK
  KOO25000.1 213 SLSELFSEGKSGSFFYFSNDGRYLIKTIPHRELRSLIHILPQYVVHVESQPHTLLPRFMGAHRLMLPhghskRVRKVHFIVMTNVFNTSRAIHHRYDLK 311
                 589*************************************************************9988888888999********************** PP

                 S--TT-S--HHHHTS CS
       PIP5K  98 GstvgReakkkeeek 112
                 Gst+gR++ +k  +k
  KOO25000.1 312 GSTQGRTTGEKVLKK 326
                 *******99876554 PP

  == domain 2  score: 63.8 bits;  conditional E-value: 5.7e-21
                 HHHHHHHHHHHTTB-S-EEEEEE.....................EB---------------------------....................------ CS
       PIP5K 142 qlekDvefLeslnimDYSLLlGi.....................hnsekeekeekkesessssekesekseee....................aseeee 199
                  +++D +fL+ + +mDYS+L+G+                                ++s                                   + ++ +
  KOO25000.1 330 MVRSDLNFLRAVYTMDYSMLIGVgiemvscvaagglsaspvlppV----------SDS--------------PfkirrtggqtiagkqgppwtDFDDGA 404
                 6899******************96666665555544433333210..........111..............122233444444455556665666667 PP

                 -----------SEEEEESSSSEEEEEEEEE----B--------------..--------TTHHHHHHHHHHHHHHH CS
       PIP5K 200 eseeeedeegekakeensedgkevyylgiIDiLqkynlkKklehalksl..kkdkksisavpPkeYaeRFlkfiek 273
                  ++  e      + + +  ++  +y++giIDiL+++++ K  e+++k+l   + ++  s+vpP++Ya+RF + ++k
  KOO25000.1 405 MEALLEMAPDAGVVDGRFVPEPAIYFIGIIDILTDWTCAKASENWFKTLqhPHTPSVHSCVPPRRYADRFERAMRK 480
                 7777777788888899999999***************************877888899*************99986 PP

>> EF-hand_1  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.0   0.9   1.3e-07   0.00033       6      27 ..      17      38 ..      17      40 .. 0.88
   2 !   24.0   0.1   6.9e-09   1.8e-05       3      28 ..      48      73 ..      46      74 .. 0.88
   3 !    9.5   0.0   0.00028      0.72       2      17 ..      84      99 ..      83     110 .. 0.88
   4 !   16.5   0.0   1.7e-06    0.0043       3      24 ..     133     154 ..     131     158 .. 0.87

  Alignments for each domain:
  == domain 1  score: 20.0 bits;  conditional E-value: 1.3e-07
                HHHHTTTSSSEEEHHHHHHHHH CS
   EF-hand_1  6 FrefDkDgdGkIdfeEfkellk 27
                F ++D DgdG+++f+Ef++ l 
  KOO25000.1 17 FFKLDSDGDGQLNFDEFRNGLG 38
                6689**************9875 PP

  == domain 2  score: 24.0 bits;  conditional E-value: 6.9e-09
                HHHHHHHTTTSSSEEEHHHHHHHHHH CS
   EF-hand_1  3 keiFrefDkDgdGkIdfeEfkellkk 28
                + +F+ fDkDg+GkI+++Ef++ +++
  KOO25000.1 48 RILFNSFDKDGSGKIERNEFLASMAA 73
                568******************98876 PP

  == domain 3  score: 9.5 bits;  conditional E-value: 0.00028
                HHHHHHHHTTTSSSEE CS
   EF-hand_1  2 lkeiFrefDkDgdGkI 17
                ++ +F+ +D+++dG++
  KOO25000.1 84 IQLAFDAYDTNKDGRL 99
                5679**********86 PP

  == domain 4  score: 16.5 bits;  conditional E-value: 1.7e-06
                 HHHHHHHTTTSSSEEEHHHHHH CS
   EF-hand_1   3 keiFrefDkDgdGkIdfeEfke 24 
                 +e+Fr +D D+ G++++e++  
  KOO25000.1 133 RELFRCMDIDNKGYVTKEDYAY 154
                 89****************9865 PP

>> EF-hand_7  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.1   2.2   2.6e-12   6.5e-09       2      70 ..      11      71 ..      10      72 .. 0.84
   2 !   37.6   0.1   8.9e-13   2.3e-09       2      69 ..      82     155 ..      81     157 .. 0.86

  Alignments for each domain:
  == domain 1  score: 36.1 bits;  conditional E-value: 2.6e-12
   EF-hand_7  2 eklkeaFkelDtdgdgyldkeellrllrkifqgagegsklsdee.lellfkefDtdkdGvisfdEFlkly 70
                ++l e F +lD+dgdg l+ +e+++         g g    d++ ++ lf+ fD+d++G+i ++EFl+ +
  KOO25000.1 11 KDLTEHFFKLDSDGDGQLNFDEFRN---------GLGTLGLDQSfVRILFNSFDKDGSGKIERNEFLASM 71
                678999****************884.........5555555555588*******************9876 PP

  == domain 2  score: 37.6 bits;  conditional E-value: 8.9e-13
   EF-hand_7   2 eklkeaFkelDtdgdgyldkeellrllrkifqga......gegsklsdeelellfkefDtdkdGvisfdEFlkl 69 
                  +++ aF+++Dt++dg+l   e+ +++ ++f+        + +s + ++  ++lf+++D d+ G+++ +++ +l
  KOO25000.1  82 AQIQLAFDAYDTNKDGRLVLPEVYHVISSLFATMekmgirDHMSASAEDTARELFRCMDIDNKGYVTKEDYAYL 155
                 58999*****************7779999988778997775555556688*********************997 PP

>> EF-hand_8  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.5   1.0   9.1e-06     0.023      32      50 ..      17      35 ..      11      40 .. 0.88
   2 !   20.2   0.1   1.6e-07    0.0004      23      53 ..      42      72 ..      34      73 .. 0.83
   3 !    5.4   0.0    0.0063        16      27      47 ..      83     103 ..      80     107 .. 0.85
   4 !   25.9   0.1   2.5e-09   6.4e-06      13      52 ..     114     156 ..     109     159 .. 0.81
   5 ?   -3.1   0.0       2.9   7.5e+03      42      55 .]     168     181 ..     164     181 .. 0.81

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 9.1e-06
   EF-hand_8 32 frefDtdgdGkisfeEFcv 50
                f ++D dgdG ++f+EF +
  KOO25000.1 17 FFKLDSDGDGQLNFDEFRN 35
                889**************76 PP

  == domain 2  score: 20.2 bits;  conditional E-value: 1.6e-07
   EF-hand_8 23 lseeevdilfrefDtdgdGkisfeEFcvlle 53
                l  + v+ilf+ fD dg+Gki  +EF++ ++
  KOO25000.1 42 LDQSFVRILFNSFDKDGSGKIERNEFLASMA 72
                555559*********************9885 PP

  == domain 3  score: 5.4 bits;  conditional E-value: 0.0063
   EF-hand_8  27 evdilfrefDtdgdGkisfeE 47 
                 +++  f++ Dt++dG++ + E
  KOO25000.1  83 QIQLAFDAYDTNKDGRLVLPE 103
                 68999**********997776 PP

  == domain 4  score: 25.9 bits;  conditional E-value: 2.5e-09
   EF-hand_8  13 ilrilglkk..glseee.vdilfrefDtdgdGkisfeEFcvll 52 
                 ++ ++g+++  + s+e+ +++lfr++D+d++G++++e++  l+
  KOO25000.1 114 TMEKMGIRDhmSASAEDtARELFRCMDIDNKGYVTKEDYAYLA 156
                 564557777888899999********************97655 PP

  == domain 5  score: -3.1 bits;  conditional E-value: 2.9
   EF-hand_8  42 kisfeEFcvllerr 55 
                 +++f+++  l++rr
  KOO25000.1 168 TVNFKDYAPLAFRR 181
                 799***99999885 PP

>> EF-hand_6  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.0   1.4   1.5e-06     0.004       4      30 ..      15      40 ..      12      42 .. 0.86
   2 !   20.5   0.1   1.2e-07    0.0003       3      25 ..      48      70 ..      46      75 .. 0.87
   3 !   12.8   0.0   3.5e-05     0.088       2      27 ..      84     109 ..      83     113 .. 0.83
   4 !   11.8   0.0   7.2e-05      0.18       2      21 ..     132     151 ..     131     158 .. 0.91

  Alignments for each domain:
  == domain 1  score: 17.0 bits;  conditional E-value: 1.5e-06
   EF-hand_6  4 eaFklfDkdgdGkidaeElrkalrkal 30
                e F ++D dgdG+++++E+r+ l   l
  KOO25000.1 15 EHFFKLDSDGDGQLNFDEFRNGLG-TL 40
                67999****************998.45 PP

  == domain 2  score: 20.5 bits;  conditional E-value: 1.2e-07
   EF-hand_6  3 reaFklfDkdgdGkidaeElrka 25
                r +F+ fDkdg+Gki ++E+ + 
  KOO25000.1 48 RILFNSFDKDGSGKIERNEFLAS 70
                568*****************875 PP

  == domain 3  score: 12.8 bits;  conditional E-value: 3.5e-05
   EF-hand_6   2 lreaFklfDkdgdGkidaeElrkalr 27 
                 ++ aF+++D+++dG +   E+ ++++
  KOO25000.1  84 IQLAFDAYDTNKDGRLVLPEVYHVIS 109
                 5679***********98888887776 PP

  == domain 4  score: 11.8 bits;  conditional E-value: 7.2e-05
   EF-hand_6   2 lreaFklfDkdgdGkidaeE 21 
                  re+F+ +D d+ G++++e+
  KOO25000.1 132 ARELFRCMDIDNKGYVTKED 151
                 599***************98 PP

>> EF-hand_5  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.3   0.9   8.1e-06     0.021       7      23 ..      19      35 ..      15      37 .. 0.88
   2 !   21.3   0.2     5e-08   0.00013       4      23 ..      50      69 ..      46      72 .. 0.87
   3 !   11.8   0.1     5e-05      0.13       4      16 ..      87      99 ..      84      99 .. 0.85
   4 !   10.4   0.0   0.00014      0.37       3      20 ..     134     151 ..     132     153 .. 0.90

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 8.1e-06
                HH-SS-SSCE-HHHHHH CS
   EF-hand_5  7 aiDlNgDGkIskeELkt 23
                ++D +gDG+++++E+++
  KOO25000.1 19 KLDSDGDGQLNFDEFRN 35
                89*************97 PP

  == domain 2  score: 21.3 bits;  conditional E-value: 5e-08
                HHHHH-SS-SSCE-HHHHHH CS
   EF-hand_5  4 tFqaiDlNgDGkIskeELkt 23
                +F+ +D++g+GkI + E+ +
  KOO25000.1 50 LFNSFDKDGSGKIERNEFLA 69
                7*****************65 PP

  == domain 3  score: 11.8 bits;  conditional E-value: 5e-05
                HHHHH-SS-SSCE CS
   EF-hand_5  4 tFqaiDlNgDGkI 16
                +F+a D+N+DG++
  KOO25000.1 87 AFDAYDTNKDGRL 99
                7**********96 PP

  == domain 4  score: 10.4 bits;  conditional E-value: 0.00014
                 HHHHHH-SS-SSCE-HHH CS
   EF-hand_5   3 dtFqaiDlNgDGkIskeE 20 
                 ++F+++D ++ G+++ke 
  KOO25000.1 134 ELFRCMDIDNKGYVTKED 151
                 68**************95 PP

>> SPARC_Ca_bdg  Secreted protein acidic and rich in cysteine Ca binding region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.5   0.0     0.002         5      55     111 ..      12      68 ..       3      70 .. 0.88
   2 ?    3.5   0.0     0.033        84      52      84 ..      80     112 ..      69     154 .. 0.84

  Alignments for each domain:
  == domain 1  score: 7.5 bits;  conditional E-value: 0.002
  SPARC_Ca_bdg  55 pvawkFsklDtnsdkvlsksELaplraplvklehCikpflescDadkdkkislkEwc 111
                    ++ +F klD + d+ l+  E ++   +l   ++ ++ +++s D d  +ki+++E+ 
    KOO25000.1  12 DLTEHFFKLDSDGDGQLNFDEFRNGLGTLGLDQSFVRILFNSFDKDGSGKIERNEFL 68 
                   5556799***************99888899999999*******************96 PP

  == domain 2  score: 3.5 bits;  conditional E-value: 0.033
  SPARC_Ca_bdg  52 ckepvawkFsklDtnsdkvlsksELaplraplv 84 
                      +++  F+  Dtn+d+ l   E+ ++ ++l 
    KOO25000.1  80 RDAQIQLAFDAYDTNKDGRLVLPEVYHVISSLF 112
                   56789999*********9999999988877764 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (483 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       351  (0.0195772); expected 358.6 (0.02)
Passed bias filter:                      348  (0.0194099); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.56u 0.27s 00:00:00.83 Elapsed: 00:00:00.45
# Mc/sec: 3252.16
//
Query:       KOO25001.1  [L=450]
Description: 70 kda peptidyl-prolyl isomerase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    3.4e-15   56.1   0.0    9.2e-15   54.7   0.0    1.8  1  FKBP_C       FKBP-type peptidyl-prolyl cis-trans isomerase
    1.8e-07   31.4   2.5    4.6e-07   30.0   2.5    1.7  1  TPR_12       Tetratricopeptide repeat
    3.7e-07   29.7   1.0    5.9e-05   22.7   0.1    2.6  2  TPR_1        Tetratricopeptide repeat
    6.7e-06   26.7   1.5    6.7e-06   26.7   1.5    2.4  2  TPR_16       Tetratricopeptide repeat
    2.2e-05   24.3   1.2     0.0012   18.9   0.1    2.7  2  TPR_8        Tetratricopeptide repeat
    0.00018   21.4  11.3    0.00026   20.9   0.2    3.5  3  TPR_2        Tetratricopeptide repeat
     0.0014   19.1   1.3     0.0048   17.4   0.3    2.3  2  TPR_19       Tetratricopeptide repeat
     0.0047   17.1   0.6     0.0092   16.2   0.6    1.4  1  ANAPC3       Anaphase-promoting complex, cyclosome, subunit 3
     0.0053   16.4   1.2      0.045   13.5   0.2    2.6  2  TPR_11       TPR repeat
     0.0066   17.2   7.0      0.036   14.9   0.9    3.6  2  TPR_14       Tetratricopeptide repeat
  ------ inclusion threshold ------
       0.03   14.5   0.2       0.12   12.5   0.1    2.2  2  TPR_9        Tetratricopeptide repeat
       0.12   12.2   0.0       0.22   11.3   0.0    1.4  1  TOM20_plant  Plant specific mitochondrial import receptor sub
       0.27   12.0   2.3       0.83   10.4   0.5    2.7  2  TPR_6        Tetratricopeptide repeat
        2.9    7.9   4.9         40    4.3   0.1    3.4  3  TPR_10       Tetratricopeptide repeat
        3.7    5.7   7.9        5.8    5.1   7.9    1.2  1  Atrophin-1   Atrophin-1 family


Domain annotation for each model (and alignments):
>> FKBP_C  FKBP-type peptidyl-prolyl cis-trans isomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.7   0.0   7.7e-18   9.2e-15       7      94 .]      84     188 ..      79     188 .. 0.86

  Alignments for each domain:
  == domain 1  score: 54.7 bits;  conditional E-value: 7.7e-18
                 TTCEEEEEEEEEE................TTSSEEEEHCCHTSEEEEETTSSSSCHHHHHHHTTSBTT-EEEEEEEGGGTTTTTTBCTTT..B.TTSEE CS
      FKBP_C   7 egdtVtvhykgkl................edgkvfdssrsrakplefkvGsgqvikGfeealegmkvGekrtltippelaYgekglaggv..ippnatL 87 
                  g++V++h +g+                 +d+++f++sr+r+ p  + vG+g +++G+e+al  m++Ge +++ti+pe +Yg+ g    +  +p+ atL
  KOO25001.1  84 AGAFVRLHLTGRAkldqsfvsqraletgfKDNSIFEDSRERGVPNMLLVGRGILVPGLEKALLSMCAGEHAEVTIQPEGGYGAAGSVS-NpvVPGSATL 181
                 57888899999887777777777776665679999999*********************************************99843.335******* PP

                 EEEEEEE CS
      FKBP_C  88 vFeveLl 94 
                  ++ve+l
  KOO25001.1 182 TYDVEIL 188
                 *****86 PP

>> TPR_12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.0   2.5   3.9e-10   4.6e-07       4      74 ..     258     320 ..     255     323 .. 0.92

  Alignments for each domain:
  == domain 1  score: 30.0 bits;  conditional E-value: 3.9e-10
      TPR_12   4 talnnlaavlrrlgrydeAlellekaleiarrllGpdhpltattlrnLgrlyralgryeeAlelleealai 74 
                 t++ nlaav +rl+r d+A++  + al i       dhp    +l+ +g++y +lg+y  A+ +le+a a+
  KOO25001.1 258 TLHLNLAAVKLRLKREDDAIKQAHDALKIS-----ADHPK---ALYRIGQAYTQLGKYTLARFHLEKAEAV 320
                 55669*************************.....9**99...8************************876 PP

>> TPR_1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.2   0.1     0.017        20       4      31 ..     260     287 ..     258     290 .. 0.89
   2 !   22.7   0.1   4.9e-08   5.9e-05       1      27 [.     291     317 ..     291     320 .. 0.95

  Alignments for each domain:
  == domain 1  score: 5.2 bits;  conditional E-value: 0.017
                 HHHHHHHHHHTT-HHHHHHHHHHHHHHS CS
       TPR_1   4 lynlGnayfklgkydeAleyyekALeln 31 
                 + nl+++ ++l++ d+A++    AL++ 
  KOO25001.1 260 HLNLAAVKLRLKREDDAIKQAHDALKIS 287
                 78*****************999999885 PP

  == domain 2  score: 22.7 bits;  conditional E-value: 4.9e-08
                 HHHHHHHHHHHHHTT-HHHHHHHHHHH CS
       TPR_1   1 akalynlGnayfklgkydeAleyyekA 27 
                 +kaly++G+ay +lgky  A  + ekA
  KOO25001.1 291 PKALYRIGQAYTQLGKYTLARFHLEKA 317
                 69************************9 PP

>> TPR_16  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.7   1.5   5.6e-09   6.7e-06       1      60 [.     261     318 ..     261     326 .. 0.88
   2 ?   -1.3   0.1       3.1   3.7e+03       7      20 ..     371     384 ..     369     391 .. 0.83

  Alignments for each domain:
  == domain 1  score: 26.7 bits;  conditional E-value: 5.6e-09
      TPR_16   1 lalaraalragdyddAaaaleaalkrdpssPdaaeAllllgdaalrqgrlaeAa.alyraa 60 
                 l+la   lr+++ ddA+++++ alk      d++ Al+  g+a+ ++g +++A+  l +a+
  KOO25001.1 261 LNLAAVKLRLKREDDAIKQAHDALKIS---ADHPKALYRIGQAYTQLGKYTLARfHLEKAE 318
                 6889999********************...88888******************96666665 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 3.1
      TPR_16   7 alragdyddAaaal 20 
                  l++ ++++A +al
  KOO25001.1 371 ELDNSRFARAKRAL 384
                 57899999999887 PP

>> TPR_8  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.6   0.1     0.078        93       3      34 .]     259     290 ..     257     290 .. 0.90
   2 !   18.9   0.1   9.9e-07    0.0012       2      27 ..     292     317 ..     291     319 .. 0.95

  Alignments for each domain:
  == domain 1  score: 3.6 bits;  conditional E-value: 0.078
                 HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH. CS
       TPR_8   3 ayynlgsiylklgdyeeAkeyyekaleldpdn 34 
                 +++nl+ + l l++ + A++    al+++ d+
  KOO25001.1 259 LHLNLAAVKLRLKREDDAIKQAHDALKISADH 290
                 57899999**************99*9999876 PP

  == domain 2  score: 18.9 bits;  conditional E-value: 9.9e-07
                 CHHHHHHHHHHHTT-HHHHHHHHHHH CS
       TPR_8   2 eayynlgsiylklgdyeeAkeyyeka 27 
                 +a+y++g++y +lg+y  A   +eka
  KOO25001.1 292 KALYRIGQAYTQLGKYTLARFHLEKA 317
                 79***********************9 PP

>> TPR_2  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   1.3       9.9   1.2e+04      18      29 ..      31      42 ..      29      46 .. 0.84
   2 !    7.2   0.1    0.0051       6.1       3      31 ..     259     287 ..     258     290 .. 0.91
   3 !   20.9   0.2   2.2e-07   0.00026       1      27 [.     291     317 ..     291     320 .. 0.95

  Alignments for each domain:
  == domain 1  score: -3.0 bits;  conditional E-value: 9.9
       TPR_2 18 eeAleafekAle 29
                eeA+   ekA +
  KOO25001.1 31 EEARIKAEKAAQ 42
                899999999987 PP

  == domain 2  score: 7.2 bits;  conditional E-value: 0.0051
       TPR_2   3 alynlGlayyklgdyeeAleafekAleld 31 
                 ++ nl+ + ++l++ ++A++    Al++ 
  KOO25001.1 259 LHLNLAAVKLRLKREDDAIKQAHDALKIS 287
                 5889**********************996 PP

  == domain 3  score: 20.9 bits;  conditional E-value: 2.2e-07
       TPR_2   1 aealynlGlayyklgdyeeAleafekA 27 
                 ++aly++G+ay +lg+y  A+ ++ekA
  KOO25001.1 291 PKALYRIGQAYTQLGKYTLARFHLEKA 317
                 689***********************9 PP

>> TPR_19  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.6   0.2     0.082        98      20      46 ..     252     278 ..     247     280 .. 0.87
   2 !   17.4   0.3     4e-06    0.0048       8      51 ..     274     317 ..     268     320 .. 0.93

  Alignments for each domain:
  == domain 1  score: 3.6 bits;  conditional E-value: 0.082
      TPR_19  20 edpknaearllLAeallalgqldeAea 46 
                   p ++ + l+LA + l l++ d+A++
  KOO25001.1 252 LQPAMLTLHLNLAAVKLRLKREDDAIK 278
                 5799999******************86 PP

  == domain 2  score: 17.4 bits;  conditional E-value: 4e-06
      TPR_19   8 aeAlalleqalqedpknaearllLAeallalgqldeAealLdal 51 
                 ++A++    al+ +++++ a+++  +a+ +lg ++ A+  L+++
  KOO25001.1 274 DDAIKQAHDALKISADHPKALYRIGQAYTQLGKYTLARFHLEKA 317
                 799***********************************998875 PP

>> ANAPC3  Anaphase-promoting complex, cyclosome, subunit 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.6   7.7e-06    0.0092      29      82 .]     263     317 ..     251     317 .. 0.89

  Alignments for each domain:
  == domain 1  score: 16.2 bits;  conditional E-value: 7.7e-06
                 HHHHHHHTT-HHHHHHHHHCT.SHHHC-HHHHHHHHHHHHHTT-HHHHHHHH-SS CS
      ANAPC3  29 lAlclylngqykrAyellrka.klnskslgcrylfAqcllkLkkyeeAiaaLekl 82 
                 lA + +++++ + A++ +++a k+   +++++y ++q++ +L+ky  A+ +Lek+
  KOO25001.1 263 LAAVKLRLKREDDAIKQAHDAlKISADHPKALYRIGQAYTQLGKYTLARFHLEKA 317
                 5777788888889999999999999***************************985 PP

>> TPR_11  TPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.6   0.0      0.38   4.5e+02      19      40 ..     248     269 ..     247     271 .. 0.85
   2 !   13.5   0.2   3.7e-05     0.045      13      42 .]     276     305 ..     273     320 .. 0.89

  Alignments for each domain:
  == domain 1  score: 0.6 bits;  conditional E-value: 0.38
      TPR_11  19 kAlkldPdnaeayynLGlayyk 40 
                 +A  l P   ++++nL+++ ++
  KOO25001.1 248 QAAVLQPAMLTLHLNLAAVKLR 269
                 8999999999*******99766 PP

  == domain 2  score: 13.5 bits;  conditional E-value: 3.7e-05
      TPR_11  13 AieaYkkAlkldPdnaeayynLGlayykqG 42 
                 Ai++   Alk++ d + a+y +G+ay ++G
  KOO25001.1 276 AIKQAHDALKISADHPKALYRIGQAYTQLG 305
                 55555569******************9998 PP

>> TPR_14  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.9     3e-05     0.036       4      43 ..     260     299 ..     257     300 .. 0.92
   2 !   10.0   0.1    0.0011       1.3       1      29 [.     291     319 ..     291     328 .. 0.92

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 3e-05
      TPR_14   4 llalaeallalGdpdeAiallrralalaPddaeawlllaq 43 
                 +l la++ l+l + d+Ai+ +++al+   d++ a+++ +q
  KOO25001.1 260 HLNLAAVKLRLKREDDAIKQAHDALKISADHPKALYRIGQ 299
                 6779******************************999887 PP

  == domain 2  score: 10.0 bits;  conditional E-value: 0.0011
      TPR_14   1 peallalaeallalGdpdeAiallrrala 29 
                 p+al+++++a+ +lG++  A+ +l++a a
  KOO25001.1 291 PKALYRIGQAYTQLGKYTLARFHLEKAEA 319
                 689**********************9976 PP

>> TPR_9  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.0       5.6   6.7e+03      30      41 ..     209     220 ..     204     248 .. 0.60
   2 ?   12.5   0.1    0.0001      0.12       6      55 ..     268     317 ..     263     342 .. 0.86

  Alignments for each domain:
  == domain 1  score: -2.7 bits;  conditional E-value: 5.6
       TPR_9  30 eerrdRGlllaq 41 
                 +err RG  l+ 
  KOO25001.1 209 DERRRRGNTLVG 220
                 666766655554 PP

  == domain 2  score: 12.5 bits;  conditional E-value: 0.0001
       TPR_9   6 ireedweralavverllllaPddpeerrdRGlllaqlGclsaAladLeay 55 
                 +r ++ + a++ +   l +  d+p  ++  G+++ qlG +  A++ Le +
  KOO25001.1 268 LRLKREDDAIKQAHDALKISADHPKALYRIGQAYTQLGKYTLARFHLEKA 317
                 5666777788888889999****************************976 PP

>> TOM20_plant  Plant specific mitochondrial import receptor subunit TOM20
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   0.00018      0.22      52     101 ..     274     319 ..     254     375 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00018
                  HHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH CS
  TOM20_plant  52 qdaiskleeallidPkkhdalWcignaytsfafltpdeeeakenfekatq 101
                  +dai +  +al i     +al+ ig ayt  + +t     a+ ++eka  
   KOO25001.1 274 DDAIKQAHDALKISADHPKALYRIGQAYTQLGKYTL----ARFHLEKAEA 319
                  69****************************999874....5566666655 PP

>> TPR_6  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.0       3.2   3.8e+03       4      25 ..     261     282 ..     259     289 .. 0.78
   2 ?   10.4   0.5   0.00069      0.83       2      25 ..     293     316 ..     292     317 .. 0.89

  Alignments for each domain:
  == domain 1  score: -1.1 bits;  conditional E-value: 3.2
                 HHHHHHHHHHHHHHHHHHHHHH CS
       TPR_6   4 yklalsyrklgdtdkAlealer 25 
                 ++la   ++l++ d+A++   +
  KOO25001.1 261 LNLAAVKLRLKREDDAIKQAHD 282
                 6788888999999999986655 PP

  == domain 2  score: 10.4 bits;  conditional E-value: 0.00069
                 HHHHHHHHHHHHHHHHHHHHHHHH CS
       TPR_6   2 AlyklalsyrklgdtdkAlealer 25 
                 Aly+++++y +lg+++ A+  le+
  KOO25001.1 293 ALYRIGQAYTQLGKYTLARFHLEK 316
                 9**********99****9977765 PP

>> TPR_10  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.3       2.9   3.5e+03      15      37 ..      55      77 ..      43      80 .. 0.65
   2 ?    4.3   0.1     0.034        40       7      31 ..     262     286 ..     261     289 .. 0.94
   3 ?    4.1   0.0     0.038        46       6      27 ..     295     316 ..     292     326 .. 0.82

  Alignments for each domain:
  == domain 1  score: -1.9 bits;  conditional E-value: 2.9
      TPR_10 15 rgrydeAealleealairrrllG 37
                r ++++ e+ le +   r r+ G
  KOO25001.1 55 REQWEARERELEASWTKRVRTKG 77
                55566666666776666666655 PP

  == domain 2  score: 4.3 bits;  conditional E-value: 0.034
      TPR_10   7 NLanalrqrgrydeAealleealai 31 
                 NLa++  +++r d+A + +++al i
  KOO25001.1 262 NLAAVKLRLKREDDAIKQAHDALKI 286
                 9**********************98 PP

  == domain 3  score: 4.1 bits;  conditional E-value: 0.038
      TPR_10   6 nNLanalrqrgrydeAeallee 27 
                   ++ a++q+g+y+ A+ +le+
  KOO25001.1 295 YRIGQAYTQLGKYTLARFHLEK 316
                 56899********988866665 PP

>> Atrophin-1  Atrophin-1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.1   7.9    0.0048       5.8     584     622 ..      31      71 ..      27     106 .. 0.65

  Alignments for each domain:
  == domain 1  score: 5.1 bits;  conditional E-value: 0.0048
  Atrophin-1 584 ekakreaeqkareekerekerekerer..ererereaeraa 622
                 e a+ +ae+ a++e+e e  +  ere+   rere ea  + 
  KOO25001.1  31 EEARIKAEKAAQNERELEESKRMEREQweARERELEASWTK 71 
                 789999**********9999988888722456666655333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (450 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1060  (0.0591221); expected 358.6 (0.02)
Passed bias filter:                      565  (0.0315132); expected 358.6 (0.02)
Passed Vit filter:                        75  (0.00418317); expected 17.9 (0.001)
Passed Fwd filter:                        17  (0.000948185); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              15  [number of targets reported over threshold]
# CPU time: 0.56u 0.29s 00:00:00.85 Elapsed: 00:00:00.44
# Mc/sec: 3090.49
//
Query:       KOO25002.1  [L=650]
Description: hypothetical protein Ctob_006564, partial [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.6e-05   22.2   4.1    0.00013   21.1   4.1    1.5  1  LMBR1     LMBR1-like membrane protein
     0.0065   16.4   0.1       0.02   14.8   0.0    1.8  2  DsbD_2    Cytochrome C biogenesis protein transmembrane regio


Domain annotation for each model (and alignments):
>> LMBR1  LMBR1-like membrane protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.1   4.1   1.4e-08   0.00013     353     509 ..     260     446 ..     222     447 .. 0.68

  Alignments for each domain:
  == domain 1  score: 21.1 bits;  conditional E-value: 1.4e-08
       LMBR1 353 vllilsiilvllsiiiilseltklle..........kpplslfalfievsaessfglfga.........elieillilYlmlcayvglfklkl.pnfyr 431
                 + ++++++l++l  ++++se+++l +           pp+  ++ + ++ + +  g++ a         e   ++l + ++lc+ ++l +l l ++ yr
  KOO25002.1 260 LGRLWALCLIALFTLVLVSEFSLLSQfsatvswfpePPPY-DNDTLNGLPSPTPIGFVLArggrpqdtaEEWLFALGVVMILCCAWSLRHLELsIVWYR 357
                 5556666666666666666666666564444444432222.2222222333333333333555555555444455555699************99**** PP

       LMBR1 432 laphhqTdmsslifnaalllrltsPlclnflglihfd........eTaFtqll...Gsmdvleflggfgfviyypifilllvvatlfnl 509
                 +a+ h Td ssl  n+a+++r+++ l++n+  l   +        +T F+      G++ v ++ g +++ ++ p+++ll+++  +f++
  KOO25002.1 358 MARPHATDTSSLSYNSAIFCRIAVMLVFNTNLLVLPSevdgvrsdQTRFYCTFapkGRLLVPSVQGHDYYMLLVPLLLLLICLSLYFDV 446
                 ************************999998444322246699999****987633366667788888899999*********9999975 PP

>> DsbD_2  Cytochrome C biogenesis protein transmembrane region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.0   2.3e-06      0.02      10      68 ..     210     288 ..     205     295 .. 0.79
   2 ?   -3.5   0.0      0.92   8.3e+03      75      85 ..     333     343 ..     322     361 .. 0.53

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 2.3e-06
      DsbD_2  10 sl.hClgmCggivlalslsk...............pkra....lalllynlGRilsYallGalvgllgsvlqlageleg 68 
                 ++  C+  Cg  ++ +s++k               ++r+    +  l y+lGR+ + +l++++  +l s ++l +++++
  KOO25002.1 210 AFfTCFRSCGDALAQCSQAKyddwrtnmrvywplsSQRRlikfWTELQYQLGRLWALCLIALFTLVLVSEFSLLSQFSA 288
                 5559************99999999888877776642333344478**************************99988743 PP

  == domain 2  score: -3.5 bits;  conditional E-value: 0.92
      DsbD_2  75 vllgllllllg 85 
                  l ++++l+++
  KOO25002.1 333 ALGVVMILCCA 343
                 22222222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (650 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       749  (0.0417759); expected 358.6 (0.02)
Passed bias filter:                      312  (0.017402); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.56u 0.28s 00:00:00.84 Elapsed: 00:00:00.42
# Mc/sec: 4616.57
//
Query:       KOO25003.1  [L=433]
Description: hypothetical protein Ctob_006570 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      1e-07   32.7   0.0    5.7e-07   30.2   0.0    2.2  2  ArgoN       N-terminal domain of argonaute
  ------ inclusion threshold ------
      0.078   13.4   0.1       0.19   12.2   0.0    1.6  2  NAPRTase_C  Nicotinate phosphoribosyltransferase C-terminal d
      0.091   13.2   0.2      0.091   13.2   0.2    1.9  2  PP28        Casein kinase substrate phosphoprotein PP28


Domain annotation for each model (and alignments):
>> ArgoN  N-terminal domain of argonaute
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.2   0.0   9.6e-11   5.7e-07       1     113 [.     181     293 ..     181     340 .. 0.67
   2 ?   -0.8   0.0      0.35   2.1e+03      93     107 ..     416     430 ..     375     432 .. 0.66

  Alignments for each domain:
  == domain 1  score: 30.2 bits;  conditional E-value: 9.6e-11
       ArgoN   1 rpiklraNyFkvtslpdktlyhYdveit...kkakrvglrriielll......eeykkselagkkpayDgrknlysakkLpkefedlpa.......aee 83 
                 +++++ +N+ ++ + p+ ++ +Ydv+++   k  ++  ++++i++l             +   + + +Dg+k lys++ L      lp+       +++
  KOO25003.1 181 QKVRVMTNFVPLGVRPTLVVTQYDVFFEpdvK-NEEG-RQEVIQALGimellgG----GHA--SGWCFDGSKILYSSTALA-----LPMgstmatwQGG 266
                 689**********99*********98875421.1222.4667777766533322....233..35999************4.....2224445555232 PP

       ArgoN  84 sakkepsekrrrksrtfkvtikfaksinlq 113
                 +++ +     +  +r+ +vt++fa +  lq
  KOO25003.1 267 EERLTGL-AFAGTKRQVTVTLSFAAT--LQ 293
                 3332222.233444689999999964..44 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 0.35
       ArgoN  93 rrrksrtfkvtikfa 107
                 r  ++++fkv+i+ +
  KOO25003.1 416 RMLREKKFKVKISST 430
                 445677999999865 PP

>> NAPRTase_C  Nicotinate phosphoribosyltransferase C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   3.2e-05      0.19      31      89 ..      14      72 ..       4      74 .. 0.89
   2 ?   -3.5   0.0       2.3   1.3e+04      91     105 ..     415     429 ..     401     430 .. 0.75

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 3.2e-05
  NAPRTase_C 31 keilclhpfdekkrveitpsrvekLlkkvfkdGklvyelpsleeireyvkeqlaelrpe 89
                k+++ ++   +k+  +i++  +e +l+++  dG+   ++++l +i+++v +++++l ++
  KOO25003.1 14 KPLKDRDNISRKEAERIEDDVAESILRDMHHDGRTHLNSDDLSAIQRRVTRKVDHLLED 72
                66777888888899999999***********************************9876 PP

  == domain 2  score: -3.5 bits;  conditional E-value: 2.3
  NAPRTase_C  91 kRllnPtpYkVslse 105
                  R+l  +++kV++s+
  KOO25003.1 415 DRMLREKKFKVKISS 429
                 577888888888885 PP

>> PP28  Casein kinase substrate phosphoprotein PP28
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.2   1.5e-05     0.091      25      63 ..      18      56 ..       5      65 .. 0.87
   2 ?   -3.0   0.7       1.8   1.1e+04      28      37 ..      94     103 ..      77     109 .. 0.51

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 1.5e-05
        PP28 25 kpkelsRrEreaiekqkakeryeklhaegkTeeakaDLa 63
                ++ ++sR+E e ie   a+   + +h++g+T+    DL 
  KOO25003.1 18 DRDNISRKEAERIEDDVAESILRDMHHDGRTHLNSDDLS 56
                3349****************************9999995 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 1.8
        PP28  28 elsRrEreai 37 
                 ++ Rr+r++ 
  KOO25003.1  94 DVPRRDRDEP 103
                 4455555543 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (433 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       398  (0.0221987); expected 358.6 (0.02)
Passed bias filter:                      307  (0.0171231); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.47u 0.25s 00:00:00.72 Elapsed: 00:00:00.41
# Mc/sec: 3179.17
//
Query:       KOO25004.1  [L=272]
Description: potassium voltage-gated channel subfamily g member 3 isoform 2 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    2.5e-33  115.4   3.8    2.8e-33  115.2   3.8    1.0  1  Ion_trans    Ion transport protein
    1.6e-16   60.0   3.0    5.2e-16   58.4   3.0    1.9  1  Ion_trans_2  Ion channel


Domain annotation for each model (and alignments):
>> Ion_trans  Ion transport protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  115.2   3.8   3.1e-37   2.8e-33      30     240 ..      46     252 ..       1     256 [. 0.85

  Alignments for each domain:
  == domain 1  score: 115.2 bits;  conditional E-value: 3.1e-37
                 HHC.HHHHHHHHHHHHHHHHHHHHHHHHHTH.HHHHHHCHSHHHHHHHHHHHHHHHHHHHHH...HHHHHHHHHHHHGGGGGGHHHCHSHHHHHHHHHH CS
   Ion_trans  30 lek.tileilelvftaiftlemllkilalgl.likkrYlrdpwnilDflvvlpsllslvlse...esllllsvlrlfrvlrllklisrleglrtlvtal 123
                  e+ +i  ++e +++  ft e + ++l++g+    +r+l +p n+lD+l+++p +++ +l+    + +++++++rl+r++r++k+ + ++ +r+l  +l
  KOO25004.1  46 IEEtSISVWIEAACIFAFTGEYVGRLLTCGMvMPVGRFLCSPLNLLDLLAIMPWYITQILEGgagQFFSIVRLIRLARIFRIFKASKEMKLMRVLGLTL 144
                 333599**********************999766689*********************7777777789999999999********************** PP

                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCCCCSCCSTSSSTTTSSSSSSHHHHHHHHHHHHTTSSHHHHHHHHHHHSHHHHHHHHHHHHHHHH CS
   Ion_trans 124 irsvkdllnvlllllvvlfifaligvqlfkgklreknecaktwenpnngntnFdnfftallwlfrlmttegwgdilyatldekskvaliyfvifiilgs 222
                  rs  ++ ++++++l+++++++ i   l +gk++e+++++ +++++    + F ++++a++  +++m+t+g+gd+++ t  ++      +++if il +
  KOO25004.1 145 QRSGLAISLLCVAVLIFMLFWGAIIAVLEHGKYNEEVRNYLRESGA---GSPFYSIPQAMYYCMTSMSTVGYGDLFPETPIGQ------LVGIFTILLG 234
                 **********************************776644444433...334888****************************......********** PP

                 HHHHHHHHHHHHHHHHHH CS
   Ion_trans 223 flllNlliaviadnfqel 240
                 +++l+l+i vi  +f+e 
  KOO25004.1 235 IVTLSLPITVIGQTFAEE 252
                 ***************986 PP

>> Ion_trans_2  Ion channel
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.4   3.0   5.8e-20   5.2e-16       2      77 ..     158     249 ..     150     251 .. 0.92

  Alignments for each domain:
  == domain 1  score: 58.4 bits;  conditional E-value: 5.8e-20
                  HHHHTCHHHHHHHHT.......................T---HHHHHHHHHHHHTTS----SSTT-----HHHHHHHHHHHHHHHHHHHHHHHHH CS
  Ion_trans_2   2 vlllvlifgaviysl..................eeg.wekwsfldalYfsfvtltTiGYGdivpetdagrlftivyillGlalfalflavlgkvl 77 
                  vl+++l++ga+i  l                  ++  +   s+ +a+Y+++++++T+GYGd+ pet++g+l+ i++illG+++++l ++v+g+ +
   KOO25004.1 158 VLIFMLFWGAIIAVLehgkyneevrnylresgaGSPfY---SIPQAMYYCMTSMSTVGYGDLFPETPIGQLVGIFTILLGIVTLSLPITVIGQTF 249
                  689999999999999*************9997644436...**************************************************9987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (272 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       589  (0.0328518); expected 358.6 (0.02)
Passed bias filter:                      346  (0.0192983); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.42u 0.24s 00:00:00.65 Elapsed: 00:00:00.38
# Mc/sec: 2129.11
//
Query:       KOO25005.1  [L=259]
Description: glycosyltransferase family 32 protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
      1e-13   51.7   0.0    1.6e-13   51.1   0.0    1.3  1  Gly_transf_sug  Glycosyltransferase sugar-binding region cont


Domain annotation for each model (and alignments):
>> Gly_transf_sug  Glycosyltransferase sugar-binding region containing DXD motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.1   0.0   8.8e-18   1.6e-13       9      94 ..      16      94 ..       8      98 .. 0.83

  Alignments for each domain:
  == domain 1  score: 51.1 bits;  conditional E-value: 8.8e-18
  Gly_transf_sug  9 eslakahpd..yqvvvlskelekvrvaildlefllsdtpwfeeakkllplfialsDllRlaiLykyGGiYlDtDvivlkslrnsigae 94
                      +a  hp   yq+v++++            e ++ ++ w++ +++++p ++++ D++R+a+L  yGG+Y D+Dv++++++ ++++  
      KOO25005.1 16 GAWAALHPApeYQYVLWTDATL--------RELIAREYAWLLPTYDAYPHPTQRWDASRYAVLHLYGGLYADLDVHPVRPV-DELLRG 94
                    56777776555********866........566666699******************************************.888765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (259 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       530  (0.029561); expected 358.6 (0.02)
Passed bias filter:                      291  (0.0162307); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.22s 00:00:00.66 Elapsed: 00:00:00.40
# Mc/sec: 1938.41
//
Query:       KOO25006.1  [L=121]
Description: poly-histidine-tagged ubiquitin [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    6.5e-20   70.7   0.0    8.6e-20   70.3   0.0    1.2  1  ubiquitin       Ubiquitin family
      4e-16   58.4   5.0    5.9e-16   57.9   5.0    1.3  1  DNA_RNApol_7kD  DNA directed RNA polymerase, 7 kDa subunit
    5.5e-09   35.7   0.0      1e-08   34.9   0.0    1.4  2  Rad60-SLD       Ubiquitin-2 like Rad60 SUMO-like
      0.003   18.1   0.0     0.0034   17.9   0.0    1.1  1  DUF2407         DUF2407 ubiquitin-like domain
  ------ inclusion threshold ------
      0.013   15.6   0.0       0.02   15.0   0.0    1.4  1  Rad60-SLD_2     Ubiquitin-2 like Rad60 SUMO-like
      0.073   13.1   0.3       0.11   12.5   0.3    1.3  1  DZR             Double zinc ribbon
       0.13   12.3   0.1          2    8.5   0.0    2.1  2  Ubiquitin_4     Ubiquitin-like domain


Domain annotation for each model (and alignments):
>> ubiquitin  Ubiquitin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.3   0.0   3.4e-23   8.6e-20       1      72 []       3      75 ..       3      75 .. 0.97

  Alignments for each domain:
  == domain 1  score: 70.3 bits;  conditional E-value: 3.4e-23
                EEEEETTSEEEEEEEETTSBHHHHHHHHHHHH.TSSGGGEEEEETTEEE-TTSBHGGHTTSTTEEEEEEESSC CS
   ubiquitin  1 itvktldgkkitleveesdtveelKekiaeke.gipaeqqrLiysGkvLedertleeygiqdgstlhlvlrlr 72
                +tvk+  g  + l ve+++ +++lK+ +++   g+pa+qqrLiy Gk+Ledertl+++ ++ ++t hl++r+r
  KOO25006.1  3 VTVKSIEGVALQLAVEPTTPISKLKDLVEQSGlGVPADQQRLIYGGKLLEDERTLADHSVDHDATFHLLVRPR 75
                79999999**************************************************************986 PP

>> DNA_RNApol_7kD  DNA directed RNA polymerase, 7 kDa subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.9   5.0   2.3e-19   5.9e-16       1      32 []      80     111 ..      80     111 .. 0.99

  Alignments for each domain:
  == domain 1  score: 57.9 bits;  conditional E-value: 2.3e-19
                     -B-SSS--B----SSS----SSS-----B--- CS
  DNA_RNApol_7kD   1 YiCgeCgaevslkkgdpiRCkeCGhRilYKkR 32 
                     Y Cg+Cg+ +++k++dpiRC+ CG+RilYK+R
      KOO25006.1  80 YLCGDCGQTNEIKPKDPIRCRFCGYRILYKMR 111
                     9*****************************99 PP

>> Rad60-SLD  Ubiquitin-2 like Rad60 SUMO-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.9   0.0     4e-12     1e-08       1      72 []       1      72 [.       1      72 [. 0.90
   2 ?   -2.9   0.0       2.4   6.2e+03      35      51 ..      90     106 ..      87     114 .. 0.64

  Alignments for each domain:
  == domain 1  score: 34.9 bits;  conditional E-value: 4e-12
                EEEEEEESSS--EEEEEETTSBHHHHHHHHHHH.HT----TT-EEEETTEE--TTSBGGGSS--TTEEEEEEX CS
   Rad60-SLD  1 ikiilkgkdgkevkikVkptttvskLieayrkk.kgipeeqkvrLiFDGeeLdpnstvedldiedgdtidvvi 72
                +++++k+ +g  +++ V+ptt++skL++  ++   g+p+ +++rLi+ G+ L+++ t++d +++ + t+++++
  KOO25006.1  1 MEVTVKSIEGVALQLAVEPTTPISKLKDLVEQSgLGVPA-DQQRLIYGGKLLEDERTLADHSVDHDATFHLLV 72
                799***********************9976544256666.*****************************9875 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 2.4
                 T----TT-EEEETTEE- CS
   Rad60-SLD  35 gipeeqkvrLiFDGeeL 51 
                 +i++++ +r  F G ++
  KOO25006.1  90 EIKPKDPIRCRFCGYRI 106
                 56666777777766665 PP

>> DUF2407  DUF2407 ubiquitin-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.9   0.0   1.3e-06    0.0034      10      66 ..       7      62 ..       4     100 .. 0.81

  Alignments for each domain:
  == domain 1  score: 17.9 bits;  conditional E-value: 1.3e-06
     DUF2407 10 sipDleLdipdpntttvagLkqliRerlpaelasrrLrLIyaGrlLedttslasslk 66
                si  + L+     tt +++Lk l+ +     +   + rLIy G+lLed+ +la++  
  KOO25006.1  7 SIEGVALQLAVEPTTPISKLKDLVEQSG-LGVPADQQRLIYGGKLLEDERTLADHSV 62
                66667777776788999*******9887.677777889**************98654 PP

>> Rad60-SLD_2  Ubiquitin-2 like Rad60 SUMO-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.0   0.0   7.7e-06      0.02      50      89 ..      41      74 ..       2      79 .. 0.83

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 7.7e-06
                 CEEEEETTEEE-TTSBCCCCS-TTTTTTTS-EEEEEEE-- CS
  Rad60-SLD_2 50 dlklilaGkiLennktlkelrlplgevkggvtvmHvvvre 89
                 + +li+ Gk+Le+ +tl++  ++         ++H+ vr+
   KOO25006.1 41 QQRLIYGGKLLEDERTLADHSVDHD------ATFHLLVRP 74
                 569***************9854432......357777765 PP

>> DZR  Double zinc ribbon
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.3   4.3e-05      0.11      12      37 ..      79     105 ..      73     112 .. 0.79

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 4.3e-05
         DZR  12 arfCseCgtklkavaa.edrCpsCgek 37 
                 a  C++Cg++ +  ++ ++rC  Cg+ 
  KOO25006.1  79 AYLCGDCGQTNEIKPKdPIRCRFCGYR 105
                 779******95544445********97 PP

>> Ubiquitin_4  Ubiquitin-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.5   0.0    0.0008         2       1      32 [.       1      32 [.       1      42 [. 0.94
   2 ?    2.0   0.0     0.084   2.1e+02      62      84 ..      47      69 ..      40      73 .. 0.80

  Alignments for each domain:
  == domain 1  score: 8.5 bits;  conditional E-value: 0.0008
  Ubiquitin_4  1 lkvtvkkldgeslevvvkqnatvkdLkkaier 32
                 ++vtvk  +g  l+++v+ ++ ++ Lk+++e+
   KOO25006.1  1 MEVTVKSIEGVALQLAVEPTTPISKLKDLVEQ 32
                 899***************************97 PP

  == domain 2  score: 2.0 bits;  conditional E-value: 0.084
  Ubiquitin_4 62 gekLkddkaklkeygirnksels 84
                 g kL++d+ +l++  + ++++ +
   KOO25006.1 47 GGKLLEDERTLADHSVDHDATFH 69
                 568999999***99999888765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (121 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       448  (0.0249875); expected 358.6 (0.02)
Passed bias filter:                      390  (0.0217525); expected 358.6 (0.02)
Passed Vit filter:                        47  (0.00262145); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.39u 0.22s 00:00:00.61 Elapsed: 00:00:00.39
# Mc/sec: 923.26
//
Query:       KOO25007.1  [L=66]
Description: hypothetical protein Ctob_004003 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
  ------ inclusion threshold ------
      0.031   14.4   1.2      0.033   14.3   1.2    1.0  1  COG2            COG (conserved oligomeric Golgi) complex comp
      0.031   14.8   6.7      0.031   14.8   6.7    1.8  2  V-ATPase_G      Vacuolar (H+)-ATPase G subunit
       0.17   12.1   6.7       0.15   12.3   5.6    1.5  1  Plasmid_RAQPRD  Plasmid protein of unknown function (Plasmid_
       0.38   10.9  16.5       0.42   10.7  16.5    1.0  1  ATP-synt_B      ATP synthase B/B' CF(0)
        5.7    7.1  13.8        7.8    6.7  13.4    1.4  1  Flot            Flotillin


Domain annotation for each model (and alignments):
>> COG2  COG (conserved oligomeric Golgi) complex component, COG2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   1.2   9.2e-06     0.033      61     111 ..       2      52 ..       1      63 [. 0.93

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 9.2e-06
        COG2  61 SghLvglqeeleevesplaaarkkvesvreklsereeeveskleeakelee 111
                 S+ L   +e+l +ve +l++ar+  e +++  s++e+e e  ++ea+++++
  KOO25007.1   2 SADLCATRESLATVERELSEARRAAERAEARASKAEKEAERVVAEARRARD 52 
                 89999*****************************************99886 PP

>> V-ATPase_G  Vacuolar (H+)-ATPase G subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.2   0.2      0.39   1.4e+03      31      38 ..      19      26 ..       7      35 .. 0.51
   2 ?   14.8   6.7   8.7e-06     0.031      11      41 ..      35      65 ..      32      66 .] 0.94

  Alignments for each domain:
  == domain 1  score: -0.2 bits;  conditional E-value: 0.39
                HHHHHHHH CS
  V-ATPase_G 31 lkqAkeeA 38
                l +A+  A
  KOO25007.1 19 LSEARRAA 26
                33333333 PP

  == domain 2  score: 14.8 bits;  conditional E-value: 8.7e-06
                HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
  V-ATPase_G 11 qAEkeAaeivkeArkrkakrlkqAkeeAekE 41
                +AEkeA+++v+eAr+++   l +A+++A+++
  KOO25007.1 35 KAEKEAERVVAEARRARDGALANAQAQASDD 65
                7***************************976 PP

>> Plasmid_RAQPRD  Plasmid protein of unknown function (Plasmid_RAQPRD)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   5.6   4.1e-05      0.15       4      41 ..       7      46 ..       3      54 .. 0.81

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 4.1e-05
  Plasmid_RAQPRD  4 aEreeLakllkqLdqlqalveraeaqakqe..ekaRvhfd 41
                    a re La++ ++L ++ + +eraea+a ++  e++Rv  +
      KOO25007.1  7 ATRESLATVERELSEARRAAERAEARASKAekEAERVVAE 46
                    679************************9996555677655 PP

>> ATP-synt_B  ATP synthase B/B' CF(0)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7  16.5   0.00012      0.42      37      92 ..      10      65 ..       7      66 .] 0.94

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00012
  ATP-synt_B 37 deiaeAeerrkeaaallaeaeqqlkeAraeAaeiiknAkkeaeklkeeieaeaeae 92
                + +a  e+  +ea  ++++ae++  +A++eA++++++A++++  + ++++a+a+ +
  KOO25007.1 10 ESLATVERELSEARRAAERAEARASKAEKEAERVVAEARRARDGALANAQAQASDD 65
                578899**********************************************9987 PP

>> Flot  Flotillin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.7  13.4    0.0022       7.8       6      48 ..      13      55 ..       8      61 .. 0.87

  Alignments for each domain:
  == domain 1  score: 6.7 bits;  conditional E-value: 0.0022
        Flot  6 AeaakleAeAkrakaeaeAegiralnEAenalseeqialqvkl 48
                A+ ++   eA ra  +aeA + +a  EAe+++ e+ +a + +l
  KOO25007.1 13 ATVERELSEARRAAERAEARASKAEKEAERVVAEARRARDGAL 55
                78889999***************************99977665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (66 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1444  (0.0805399); expected 358.6 (0.02)
Passed bias filter:                      486  (0.0271069); expected 358.6 (0.02)
Passed Vit filter:                        64  (0.00356964); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.37u 0.25s 00:00:00.62 Elapsed: 00:00:00.40
# Mc/sec: 493.65
//
Query:       KOO25008.1  [L=271]
Description: hypothetical protein Ctob_003997 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.1e-07   32.5  28.5    0.00068   20.4   6.9    2.8  3  KIAA1430        KIAA1430 homologue
  ------ inclusion threshold ------
      0.086   12.1   5.4        0.2   11.0   5.4    1.6  1  DUF4763         Domain of unknown function (DUF4763)
       0.12   12.6   1.6       0.27   11.5   1.4    1.8  1  DUF3135         Protein of unknown function (DUF3135)
       0.66   10.6   6.5        2.9    8.6   0.8    3.5  3  SlyX            SlyX
          5    7.3  12.5        1.3    9.2   0.6    3.4  4  NYD-SP28_assoc  Sperm tail C-terminal domain


Domain annotation for each model (and alignments):
>> KIAA1430  KIAA1430 homologue
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.4   0.4   1.6e-06    0.0058       1     101 [.      50     152 ..      48     153 .. 0.70
   2 !   20.4   6.9   1.9e-07   0.00068      28     102 .]     129     202 ..     101     202 .. 0.77
   3 !   19.3   7.2   4.1e-07    0.0015       2     101 ..     149     256 ..     149     257 .. 0.76

  Alignments for each domain:
  == domain 1  score: 17.4 bits;  conditional E-value: 1.6e-06
    KIAA1430   1 Hlnklknikssidnkapkkpsh.......lskkkkklqleeerlkeiereNqiLleklseimrrkgkkksassqsqksktaskslnaenrkkelqkIee 92 
                 H  k+++ik+ id +   +++            +++ + ee+r +e+++   +L  k + i+ + +++     +  + + a +  ++++r  e+++I +
  KOO25008.1  50 HMAKIASIKPVIDDDVEDEATGearkemaAASAARRAAEEEARKAEVKEYYARLKAKTTVIDDEMDTEA---AAIARAEFAAA--SRARRAAEAAEIHR 143
                 788999999998888444322233333335555788888889999999999999999999999994322...22222222223..55899999****** PP

    KIAA1430  93 ENqkllkRl 101
                 EN++l++Rl
  KOO25008.1 144 ENEELKQRL 152
                 ********9 PP

  == domain 2  score: 20.4 bits;  conditional E-value: 1.9e-07
    KIAA1430  28 kklqleeerlkeiereNqiLleklseimrrkgk.kksassqsqksktaskslnaenrkkelqkIeeENqkllkRlq 102
                  + +  +++++ei+reN++L ++ls+i++  +   +++   + ++k a +++  ++r+ + +k++ EN ++ +R++
  KOO25008.1 129 ASRARRAAEAAEIHRENEELKQRLSQIKPHIDMdITDEVAGEAREKRAAENM--ARRQAKIEKLKAENLEMRRRIE 202
                 4455566899********************9666455556666666666777..99******************96 PP

  == domain 3  score: 19.3 bits;  conditional E-value: 4.1e-07
    KIAA1430   2 lnklknikssidnkapkkpshlskkkkklqleeerlkeier...eNqiLleklseimrrkgk..kksassqsqksktasksl...naenrkkelqkIee 92 
                 +++l +ik++id +   +++   ++k+  + +++r+++ie+   eN ++ ++++e + + +   +++a +        ++++   ++e++ k+++k++ 
  KOO25008.1 149 KQRLSQIKPHIDMDITDEVAGEAREKRAAENMARRQAKIEKlkaENLEMRRRIEESKAKTDDdvTDDAMTGGGTIGDLRNKVasdSKERKAKHAAKVNA 247
                 589**********9998777777777777778888888888888***************9767744444443333333333344466888888****** PP

    KIAA1430  93 ENqkllkRl 101
                 EN +l+ R+
  KOO25008.1 248 ENAALASRI 256
                 ********9 PP

>> DUF4763  Domain of unknown function (DUF4763)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   5.4   5.5e-05       0.2      26     119 ..     114     204 ..      48     212 .. 0.79

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 5.5e-05
     DUF4763  26 ldveeeisseselpaeqe.eeeeeldLdeiydelekiKqrvlelrskLalnvpecPeidecvdedlelelltseqpeileLqrnnhkLrqqlael 119
                 +d+e       e+ a  +  + +  +  ei  e e++Kqr+++++  + +++ +  +   ++ e+  +e+    q +i +L+ +n  +r +++e 
  KOO25008.1 114 MDTEAAAIARAEFAA--AsRARRAAEAAEIHRENEELKQRLSQIKPHIDMDITDEVA--GEAREKRAAENMARRQAKIEKLKAENLEMRRRIEES 204
                 444444444444544..2266677777899***********************9994..555555555556667****************99985 PP

>> DUF3135  Protein of unknown function (DUF3135)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   1.4   7.5e-05      0.27      20      70 ..     130     180 ..     117     193 .. 0.79

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 7.5e-05
     DUF3135  20 ealrqelieelIesapeemqrrLrglqfqiDmqlsraknPvaacvalsrmm 70 
                  ++r+ +  + I + +ee ++rL +++ +iDm +       a+  ++++ m
  KOO25008.1 130 SRARRAAEAAEIHRENEELKQRLSQIKPHIDMDITDEVAGEAREKRAAENM 180
                 56788888999*********************9987766666666666666 PP

>> SlyX  SlyX
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.2   0.1      0.08   2.9e+02      29      53 ..     134     158 ..     130     171 .. 0.79
   2 ?    8.6   0.8   0.00082       2.9      26      57 ..     180     211 ..     177     217 .. 0.85
   3 ?    0.4   0.0      0.29     1e+03      31      57 ..     240     266 ..     232     270 .. 0.81

  Alignments for each domain:
  == domain 1  score: 2.2 bits;  conditional E-value: 0.08
                 HHHHHHHHHHHHHHHHHT-XXXXXX CS
        SlyX  29 qqqqidrlqrqlrllaerlkelees 53 
                  + + ++++r+ ++l++rl+++++ 
  KOO25008.1 134 RAAEAAEIHRENEELKQRLSQIKPH 158
                 5667788899999999999888775 PP

  == domain 2  score: 8.6 bits;  conditional E-value: 0.00082
                 HHHHHHHHHHHHHHHHHHHHT-XXXXXXXXXX CS
        SlyX  26 vaeqqqqidrlqrqlrllaerlkeleessgas 57 
                 +a+ q +i++l+++  ++++r++e ++++ ++
  KOO25008.1 180 MARRQAKIEKLKAENLEMRRRIEESKAKTDDD 211
                 7999******************9999987755 PP

  == domain 3  score: 0.4 bits;  conditional E-value: 0.29
                 HHHHHHHHHHHHHHHT-XXXXXXXXXX CS
        SlyX  31 qqidrlqrqlrllaerlkeleessgas 57 
                 +  ++  ++ ++la r+k+ +++++++
  KOO25008.1 240 KHAAKVNAENAALASRIKKTKSKTNDG 266
                 66778899999******9999988765 PP

>> NYD-SP28_assoc  Sperm tail C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.5   0.1      0.19   6.9e+02      24      41 ..      95     112 ..      90     117 .. 0.84
   2 ?    9.2   0.6   0.00035       1.3      35      58 ..     131     154 ..     129     155 .. 0.91
   3 ?    4.1   0.5     0.014        51      40      57 ..     185     202 ..     177     204 .. 0.85
   4 ?   -2.8   0.0       2.1   7.4e+03      42      56 ..     242     256 ..     235     258 .. 0.68

  Alignments for each domain:
  == domain 1  score: 0.5 bits;  conditional E-value: 0.19
  NYD-SP28_assoc  24 aLekYhevLteRakliee 41 
                     ++++Y++ L+ + ++i++
      KOO25008.1  95 EVKEYYARLKAKTTVIDD 112
                     6899******99998875 PP

  == domain 2  score: 9.2 bits;  conditional E-value: 0.00035
  NYD-SP28_assoc  35 RaklieetesLekqNeeLrnlLkq 58 
                     Ra   +e  +++++NeeL+++L q
      KOO25008.1 131 RARRAAEAAEIHRENEELKQRLSQ 154
                     8889999***************98 PP

  == domain 3  score: 4.1 bits;  conditional E-value: 0.014
  NYD-SP28_assoc  40 eetesLekqNeeLrnlLk 57 
                     +++e+L+++N e+r++++
      KOO25008.1 185 AKIEKLKAENLEMRRRIE 202
                     678***********9886 PP

  == domain 4  score: -2.8 bits;  conditional E-value: 2.1
  NYD-SP28_assoc  42 tesLekqNeeLrnlL 56 
                       ++ ++N+ L +++
      KOO25008.1 242 AAKVNAENAALASRI 256
                     567778888887766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (271 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1851  (0.103241); expected 358.6 (0.02)
Passed bias filter:                      343  (0.019131); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                        21  (0.00117129); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.63u 0.26s 00:00:00.89 Elapsed: 00:00:00.41
# Mc/sec: 1990.90
//
Query:       KOO25009.1  [L=594]
Description: protein binding [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    4.4e-39  132.4   4.0    1.5e-11   44.3   0.2    4.6  4  FF              FF domain
    1.1e-18   67.0  16.5    3.5e-10   39.8   5.8    3.0  3  WW              WW domain
     0.0046   17.2   3.7       0.75   10.1   0.3    2.5  2  Glyco_hyd_101C  Glycosyl hydrolase 101 beta sandwich domain
  ------ inclusion threshold ------
      0.022   14.4   0.0      0.038   13.6   0.0    1.3  1  SpoVAE          Stage V sporulation protein AE1
       0.79    9.1   7.6        1.4    8.2   7.6    1.4  1  SelP_N          Selenoprotein P, N terminal region
          3    7.8   6.5         12    5.9   1.7    2.5  2  Neur_chan_memb  Neurotransmitter-gated ion-channel transmembr


Domain annotation for each model (and alignments):
>> FF  FF domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.5   0.0   6.4e-13   1.9e-09       2      51 .]     163     211 ..     162     211 .. 0.96
   2 !   44.3   0.2     5e-15   1.5e-11       2      51 .]     230     280 ..     229     280 .. 0.97
   3 !   28.5   0.0   4.1e-10   1.2e-06       3      51 .]     300     346 ..     298     346 .. 0.96
   4 !   20.3   0.0   1.6e-07   0.00046       3      50 ..     373     425 ..     372     426 .. 0.80

  Alignments for each domain:
  == domain 1  score: 37.5 bits;  conditional E-value: 6.4e-13
                 CHHHHHHHHHHCSSS-TTSSHHHHHHHCTTSCCCHHGTSHHHHHHHHHHH CS
          FF   2 areaFkeLLkehkeitpkstWseikkilenDpRYlalldkseReelFedy 51 
                 a++ F+++L++   ++ + +W+e++k+++n p+Y++l++ +eR+++F  +
  KOO25009.1 163 AKKTFFAMLESAG-VSGEASWEEAMKRIINKPEYRVLQTLAERKAAFFAW 211
                 99***********.*********************************765 PP

  == domain 2  score: 44.3 bits;  conditional E-value: 5e-15
                 CHHHHHHHHHHCSSS-TTSSHHHHHHHCTTSCCCHHG.TSHHHHHHHHHHH CS
          FF   2 areaFkeLLkehkeitpkstWseikkilenDpRYlal.ldkseReelFedy 51 
                  + aF e+Lk + e++++++++++++++e DpR+ al  d+ eReel+e+y
  KOO25009.1 230 RKVAFLEMLKGCAELSSRTRFHKVVQLFERDPRWSALdGDENEREELYEEY 280
                 5889**********************************************9 PP

  == domain 3  score: 28.5 bits;  conditional E-value: 4.1e-10
                 HHHHHHHHHHCSSS-TTSSHHHHHHHCTTSCCCHHGTSHHHHHHHHHHH CS
          FF   3 reaFkeLLkehkeitpkstWseikkilenDpRYlalldkseReelFedy 51 
                 + aFk LL+    +  +s W+ + + l+++p Y+al dk +R++lFe++
  KOO25009.1 300 MGAFKRLLETAR-VGGRSQWRHVADQLRDEPAYRAL-DKIDRLALFEEH 346
                 569*********.***********************.***********9 PP

  == domain 4  score: 20.3 bits;  conditional E-value: 1.6e-07
                 HHHHHHHH.HHCS..SS-TTSSHHHHHHHCTTSCCC..HHGTSHHHHHHHHHH CS
          FF   3 reaFkeLL.kehk..eitpkstWseikkilenDpRY..lalldkseReelFed 50 
                 r+aF++LL +eh    + p+++W++++ +l   p+Y   a +++s++ elFed
  KOO25009.1 373 RDAFRALLlREHRegRLLPRTRWKDLVNVLLPTPEYrfAAEQSGSTPAELFED 425
                 9****66515555*99************9965555532777***********9 PP

>> WW  WW domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.8   5.8   1.2e-13   3.5e-10       4      31 .]       8      34 ..       6      34 .. 0.96
   2 !   33.9   0.6   8.3e-12   2.5e-08       4      31 .]      51      77 ..      49      77 .. 0.93
   3 ?   -2.9   0.1       2.5   7.5e+03      24      30 ..     314     320 ..     313     320 .. 0.81

  Alignments for each domain:
  == domain 1  score: 39.8 bits;  conditional E-value: 1.2e-13
                TEEEEE-TTTT-EEEEETTT--EESS-- CS
          WW  4 GWeeqwdpdsGrvYYyNheTgetqWekP 31
                 W e+++p+ G+vYY+N+eT+et+WekP
  KOO25009.1  8 KWAEHRTPE-GKVYYHNTETNETSWEKP 34
                6********.*****************9 PP

  == domain 2  score: 33.9 bits;  conditional E-value: 8.3e-12
                TEEEEE-TTTT-EEEEETTT--EESS-- CS
          WW  4 GWeeqwdpdsGrvYYyNheTgetqWekP 31
                 W+e + ++ G++Y+yN eT++t+We P
  KOO25009.1 51 AWKEFTAAS-GKKYFYNAETKVTTWEMP 77
                6****8888.****************99 PP

  == domain 3  score: -2.9 bits;  conditional E-value: 2.5
                 --EESS- CS
          WW  24 getqWek 30 
                 g++qW +
  KOO25009.1 314 GRSQWRH 320
                 68***65 PP

>> Glyco_hyd_101C  Glycosyl hydrolase 101 beta sandwich domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.5   0.3    0.0016       4.9      76     103 ..      12      39 ..       4      45 .. 0.78
   2 !   10.1   0.3   0.00025      0.75      75     103 ..      54      82 ..      47      89 .. 0.82

  Alignments for each domain:
  == domain 1  score: 7.5 bits;  conditional E-value: 0.0016
                     --GGG-EEEEEESS-SEEEEE--HHHHT CS
  Glyco_hyd_101C  76 ekadeeklYhynpkggtstwkLpekwak 103
                     +++ e k+Y++n++  ++ w+ p+++++
      KOO25009.1  12 HRTPEGKVYYHNTETNETSWEKPDELKT 39 
                     344556***************9999876 PP

  == domain 2  score: 10.1 bits;  conditional E-value: 0.00025
                     B--GGG-EEEEEESS-SEEEEE--HHHHT CS
  Glyco_hyd_101C  75 kekadeeklYhynpkggtstwkLpekwak 103
                     + +a + k Y+yn++   +tw++pe++++
      KOO25009.1  54 EFTAASGKKYFYNAETKVTTWEMPEELKA 82 
                     455667799****************9886 PP

>> SpoVAE  Stage V sporulation protein AE1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.0   1.3e-05     0.038      30      90 ..     141     202 ..     122     210 .. 0.83

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 1.3e-05
      SpoVAE  30 asagnPtklsgeelvel.ikeakkdpvlvmvDDkGkkgegkGEkaleevlkseeievlgviA 90 
                 a a++Pt  ++ee   +    a+k++ + m++  G +ge++ E+a++++++++e +vl  +A
  KOO25009.1 141 APAAAPTLSATEEAAAAaAAAAAKKTFFAMLESAGVSGEASWEEAMKRIINKPEYRVLQTLA 202
                 5567888877777665515667889999******************************9887 PP

>> SelP_N  Selenoprotein P, N terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.2   7.6   0.00048       1.4     177     225 ..     517     570 ..     462     576 .. 0.55

  Alignments for each domain:
  == domain 1  score: 8.2 bits;  conditional E-value: 0.00048
      SelP_N 177 eaeektehehahshkqghkhhekhgh.....hHkekeelsesqqeepeeeekpa 225
                 ea+++++++++h+h++g + ++k+++      H ++++ se+++e++++ ++pa
  KOO25009.1 517 EAPNRERKKKHHHHREGEEGERKKKKkhkssRHSHRSHGSEDEDEGEGKGDSPA 570
                 333333444444443333222222220000134444455555555555555554 PP

>> Neur_chan_memb  Neurotransmitter-gated ion-channel transmembrane region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.7   0.2     0.019        56      84     223 ..     212     342 ..     197     345 .. 0.68
   2 ?    5.9   1.7    0.0039        12      90     180 ..     477     567 ..     456     588 .. 0.46

  Alignments for each domain:
  == domain 1  score: 3.7 bits;  conditional E-value: 0.019
                     H-S-S---HHHHHHHTTHHHHHHC--------------.---.-----------------------------------SS---TTGGG--..... CS
  Neur_chan_memb  84 rsprthtmpawvrkvfldklprllfmkrpsevkdnekklssg.asseaeelilskskseskkaklseeqgsekastckckckegeeaspstqlsk 177
                     r+ ++++++++ r+++ ++  ++l m +       +++lss     +  +l  ++++    + + +e+++  ++   + ++ke +e+ ++++ + 
      KOO25009.1 212 RELKREEREEEARRILRQRKVAFLEMLKG------CAELSSRtRFHKVVQLFERDPRWSALDGDENEREELYEEYALSLERKEAQERRAERKEQM 300
                     55566666666777777666666666543......444433303446678888888888888888888888888888888887777766555444 PP

                     ....-----TTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
  Neur_chan_memb 178 ....eelspelkkavegvkyiadhlraededksvkedwkyvamviDrifl 223
                         + l+ +     ++ +++ad+lr+e +++++++        iDr++l
      KOO25009.1 301 gafkRLLETARVGGRSQWRHVADQLRDEPAYRALDK--------IDRLAL 342
                     556566666667777778888888888888877776........666665 PP

  == domain 2  score: 5.9 bits;  conditional E-value: 0.0039
                     --HHH.HHHHTTHHHHHHC--------------.--------------------------------------SS---TTGGG--.....--- CS
  Neur_chan_memb  90 tmpaw.vrkvfldklprllfmkrpsevkdnekklssgasseaeelilskskseskkaklseeqgsekastckckckegeeaspstqlskeel 180
                     + p+w vr+ + d l+rl + +r s+ +++ + + +g+ s ++    +k+k++++++  + e +++k+++++  +++++ ++++++++++  
      KOO25009.1 477 RPPSWaVRTYLEDHLERLAL-ERASRPERRDEGEGEGEGSGEAPNRERKKKHHHHREGEEGERKKKKKHKSSRHSHRSHGSEDEDEGEGKGD 567
                     55566245555556666555.44444444444444444444444444444444444444444444444444444433333333333333222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (594 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1573  (0.087735); expected 358.6 (0.02)
Passed bias filter:                      507  (0.0282782); expected 358.6 (0.02)
Passed Vit filter:                        67  (0.00373696); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.69u 0.30s 00:00:00.99 Elapsed: 00:00:00.45
# Mc/sec: 3949.18
//
Query:       KOO25010.1  [L=178]
Description: hypothetical protein Ctob_003998 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (178 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       223  (0.0124379); expected 358.6 (0.02)
Passed bias filter:                      213  (0.0118802); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.39u 0.25s 00:00:00.64 Elapsed: 00:00:00.41
# Mc/sec: 1307.88
//
Query:       KOO25011.1  [L=120]
Description: gamma tubulin ring complex protein 3 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
      1e-18   68.0   0.0    1.2e-18   67.8   0.0    1.0  1  GCP_N_terminal  Gamma tubulin complex component N-terminal


Domain annotation for each model (and alignments):
>> GCP_N_terminal  Gamma tubulin complex component N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.8   0.0   6.7e-23   1.2e-18     125     231 ..       1      96 [.       1     101 [. 0.91

  Alignments for each domain:
  == domain 1  score: 67.8 bits;  conditional E-value: 6.7e-23
  GCP_N_terminal 125 LanlveevekanlkggallsllheaaqhgdpkvrkllsellervsrpflemlekWileGelsDpynEfFveenesvakeklkeddseklweekYt 219
                     +a+l++ +    lkgga++ ++ ++  hgdp vr  +++ll+++++p++ m++ W+l+Gel D ++EfF+e+   +        + + lwe++Y 
      KOO25011.1   1 MAQLARTCA--PLKGGAMIVAIARHERHGDPLVRGYVRHLLRAAAAPLFGMIRMWVLQGELRDAHEEFFIESR-AT--------PLTALWEQRYA 84 
                     788999999..99*********************************************************544.34........7899******* PP

  GCP_N_terminal 220 lrkemlPsflse 231
                     l  + + s + +
      KOO25011.1  85 LIASLIASLIAS 96 
                     *99999888765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (120 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       463  (0.0258241); expected 358.6 (0.02)
Passed bias filter:                      315  (0.0175693); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.25s 00:00:00.62 Elapsed: 00:00:00.40
# Mc/sec: 890.61
//
Query:       KOO25012.1  [L=380]
Description: hypothetical protein Ctob_004006 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.3e-07   31.9   0.0    2.3e-07   31.0   0.0    1.4  1  Acetyltransf_1   Acetyltransferase (GNAT) family
     0.0044   17.4   0.0     0.0089   16.4   0.0    1.5  1  Acetyltransf_7   Acetyltransferase (GNAT) domain
     0.0046   16.9   0.0      0.008   16.1   0.0    1.3  1  Acetyltransf_10  Acetyltransferase (GNAT) domain
  ------ inclusion threshold ------
       0.12   12.5   0.0       0.23   11.6   0.0    1.5  1  Acetyltransf_CG  GCN5-related N-acetyl-transferase


Domain annotation for each model (and alignments):
>> Acetyltransf_1  Acetyltransferase (GNAT) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.0   0.0   5.2e-11   2.3e-07      22     116 ..      83     178 ..      62     179 .. 0.82

  Alignments for each domain:
  == domain 1  score: 31.0 bits;  conditional E-value: 5.2e-11
                     HHHHHHHHSTTCEEEEEEETTEEEEEEEEEEEETTSTTEEEEEEEEESGGGTTSSHHHHHHHHHHHHHHHTTE.SEE.EEEEETTEHHHHHHHHH CS
  Acetyltransf_1  22 eefeesfsleaegllvaeedgeliGfisllkipdekggvayieslaVspeyrgkGlGsaLlealeerareegi.kki.vlaveedndaairlYek 114
                      ef    ++e+  ll+ae+ ++  G  ++ +++  ++ ++y  sl Vs ++rg+G++s+L + ++++a+++++   i  + v ++n+ + r  e+
      KOO25012.1  83 QEFNRMVEDEDVLLLFAEDVETGKGLGMMAIVWS-SPVETYWQSLRVSQAARGRGIASRLFDVAAHIALQRQGpASIgRWGVVSSNEVMTRWSER 176
                     3344445555556677777788889999999999.8899********************************77699******999*999998888 PP

                     TT CS
  Acetyltransf_1 115 lG 116
                     lG
      KOO25012.1 177 LG 178
                     87 PP

>> Acetyltransf_7  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   0.0     2e-06    0.0089      11      49 ..     102     146 ..      86     174 .. 0.72

  Alignments for each domain:
  == domain 1  score: 16.4 bits;  conditional E-value: 2e-06
                     T..TEEEEEEEEEEES...TCTEEEEE-GGGTTSSHHHHHHHH.T CS
  Acetyltransf_7  11 d..gkivGfialslld...aeitrlaVdpeyrgkGiGraLlea.a 49 
                        gk +G++a++ ++   ++   l V++++rg+Gi+++L ++ a
      KOO25012.1 102 VetGKGLGMMAIVWSSpveTYWQSLRVSQAARGRGIASRLFDVaA 146
                     255677788777777786666666*****************9521 PP

>> Acetyltransf_10  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.0   1.8e-06     0.008      20      85 ..      83     155 ..      66     177 .. 0.80

  Alignments for each domain:
  == domain 1  score: 16.1 bits;  conditional E-value: 1.8e-06
  Acetyltransf_10  20 ealrerieegealllvaeeg..gkivGviel.rdgs...hisllfVdpeyrgqGigkaLleaveee.aekdgi 85 
                      +++++++e++++lll ae+   gk +G+ ++  ++    + + l V++++rg+Gi+++L++ + +  ++++g+
       KOO25012.1  83 QEFNRMVEDEDVLLLFAEDVetGKGLGMMAIvWSSPvetYWQSLRVSQAARGRGIASRLFDVAAHIaLQRQGP 155
                      788999999999999999763477778888854444899**********************999984555544 PP

>> Acetyltransf_CG  GCN5-related N-acetyl-transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   5.2e-05      0.23      27      55 ..     123     151 ..      98     154 .. 0.78

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 5.2e-05
  Acetyltransf_CG  27 fthTeVpeelrGkGiAkkLvkaalddare 55 
                       +   V+++ rG+GiA++L + a   a +
       KOO25012.1 123 WQSLRVSQAARGRGIASRLFDVAAHIALQ 151
                      56678***************999887776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (380 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       493  (0.0274974); expected 358.6 (0.02)
Passed bias filter:                      424  (0.0236488); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.50u 0.24s 00:00:00.74 Elapsed: 00:00:00.42
# Mc/sec: 2696.40
//
Query:       KOO25013.1  [L=327]
Description: gamma-tubulin complex component 3 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.1e-62  210.8   4.1    3.5e-62  210.6   4.1    1.0  1  GCP_C_terminal  Gamma tubulin complex component C-terminal


Domain annotation for each model (and alignments):
>> GCP_C_terminal  Gamma tubulin complex component C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  210.6   4.1     2e-66   3.5e-62      24     309 .]       1     306 [.       1     306 [. 0.89

  Alignments for each domain:
  == domain 1  score: 210.6 bits;  conditional E-value: 2e-66
  GCP_C_terminal  24 ldalfdelwkpasselrlaLtslLeeairssnaqqsdelkddlsfaldlpevleeldakl.dpdslegldfltLeYkvpwplslvitpealekYq 117
                     ++ l+++l+kpa++++r++L sl e a+r+s+++           + +++ +l++ld++l +  + +g+d++ L+Y+v +p++++++++al  Y 
      KOO25013.1   1 MEHLAPSLSKPAQQLHRHHLVSLVEAAVRASHSSP---------TEAEPTLLLRHLDVSLnKGPKATGWDAFALDYRVGAPCDTIFSTSALASYR 86 
                     7899*************************987644.........45599999*****9995555566**************************** PP

  GCP_C_terminal 118 riFrfLlrvkrvefalsslwkrrkatgar.svl.......lkrarllrqemlhfvsqlqyYvldeviessWreleeklkkeatdldelieaHeaf 204
                     r+F+fL+++krve++l+++w r++ t +r           ++ ++ lr+em+h++ +lqyY+++evie++   l e+l+ +atdld+l++aH +f
      KOO25013.1  87 RLFTFLWQLKRVEHSLTAVW-RKHCTASRlL-StlhrdptIHGCYVLRNEMVHLIYNLQYYLMFEVIECESLVLHERLH-AATDLDSLLAAHGQF 178
                     ********************.7777766632.235666668888**********************************5.6777*********** PP

  GCP_C_terminal 205 LdsilkkclLrsk.kkllklleeilelileFakvldglylsvselt..........................aeeaeeeeleekleerleeleke 272
                     L s+++k +L+ + +++ + l ++++ il+Fa+v+d+ly s  e++                           ++  e  +e+++ee+l+  ++e
      KOO25013.1 179 LASLTQKAMLGAEdEPMHRALVSLFDAILAFARVQDQLYMSLLEQKaaarehaaaiavsaargtfavrgavtPAQMGELVVEASFEEQLQLAAAE 273
                     ***********9977999*********************6666655689********************99844445667777999********* PP

  GCP_C_terminal 273 FrkkvslllkvlralkeqeededlrqLllrLdfnefY 309
                     +r+++  l+++++++   + + dl++Ll+rLdfn++Y
      KOO25013.1 274 YRRRILALVSAVKRH---S-SYDLAFLLYRLDFNSYY 306
                     ************776...3.569*************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (327 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       555  (0.0309554); expected 358.6 (0.02)
Passed bias filter:                      372  (0.0207485); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.25s 00:00:00.71 Elapsed: 00:00:00.40
# Mc/sec: 2431.19
//
Query:       KOO25014.1  [L=462]
Description: hypothetical protein Ctob_004004 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
      0.008   15.1  18.9       0.37    9.6  17.9    2.1  2  DUF812          Protein of unknown function (DUF812)
  ------ inclusion threshold ------
      0.055   13.6   1.7        9.3    6.4   0.0    2.5  2  Fib_alpha       Fibrinogen alpha/beta chain family
       0.11   12.3   0.5        1.4    8.9   0.1    2.9  2  Pox_A_type_inc  Viral A-type inclusion protein repeat
       0.57    8.8  15.7       0.42    9.2   8.2    2.2  2  AAA_13          AAA domain
       0.67    9.5  41.8       0.15   11.5   0.2    3.6  3  MscS_porin      Mechanosensitive ion channel porin domain
       0.83    9.5   8.5        4.7    7.1   0.2    3.9  4  GPW_gp25        Gene 25-like lysozyme
        1.6    7.9  35.6       0.11   11.8   8.3    3.2  3  DUF3450         Protein of unknown function (DUF3450)
        4.3    7.6   5.7         32    4.8   0.0    4.1  5  XhlA            Haemolysin XhlA
          5    6.4  10.5        0.6    9.4   4.5    2.2  3  FAM76           FAM76 protein
        5.9    5.9   9.8        1.2    8.2   5.6    1.8  2  FH2             Formin Homology 2 Domain
          6    7.3  20.1       0.26   11.7   4.4    4.3  5  CLZ             C-terminal leucine zipper domain of cyclic nu
        9.8    5.8  34.7        1.9    8.1  16.6    3.3  3  Lebercilin      Ciliary protein causing Leber congenital amau


Domain annotation for each model (and alignments):
>> DUF812  Protein of unknown function (DUF812)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.6  17.9   0.00025      0.37     293     447 ..      25     176 ..       2     201 .. 0.77
   2 !    4.7   0.0    0.0074        11     317     368 ..     364     412 ..     259     418 .. 0.75

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 0.00025
      DUF812 293 slktkgsrfthaeklqftkeelakkaeteeelkkkreeeleelqeqieeleskieeleeeikklessikqveeeleeekeeneelekevklkkktlell 391
                 +   +g+r +hae++   ++   +++++    k++ ++ +++lq+q++++ +++e+ e+++++ e ++  +  e+++++    e +   +  +++++ +
  KOO25014.1  25 EARLEGARKRHAEEVAGLEA---TATHELSLEKQAANRTVTQLQTQLSQMTARAERAEAQLSSSERQLADAAAEATRQRMAAHEANVRAQQVERAASGM 120
                 33456667777777733222...233444444555666799*****************************99999999999999999999999999999 PP

      DUF812 392 pdaeeniekLqalveasaqrlvelakqWekhRvplieeyrelkesksekekeaerk 447
                 ++a e+  k   ++ea a+++ +    W+  R++l+ e+ + +   ++ +   ++ 
  KOO25014.1 121 QQAAESAMKRADACEAEAREIASRRISWKDERAALTTELHAERAILDKERLHLRSL 176
                 9999999999*****************************99998888777665554 PP

  == domain 2  score: 4.7 bits;  conditional E-value: 0.0074
      DUF812 317 kaeteeelkkkreeeleelqeqieeleskieeleeeikklessikqveeele 368
                 + +   ++ +++e+   ++q  i++  ++++++++e+k+ +++i ++e +l 
  KOO25014.1 364 AGSAASDVVAAQEA---AVQAAIHKFAARVDQYQSELKHSKERIAELERALA 412
                 55555666666664...47777777888888888888887777777776655 PP

>> Fib_alpha  Fibrinogen alpha/beta chain family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.2   2.0     0.031        46      46     132 ..      49     134 ..      26     142 .. 0.64
   2 ?    6.4   0.0    0.0062       9.3      24      73 ..     370     419 ..     365     424 .. 0.88

  Alignments for each domain:
  == domain 1  score: 4.2 bits;  conditional E-value: 0.031
                 CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC.CCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT CS
   Fib_alpha  46 eisnstkeaeelvkeikdslrekqkskkdndnvikksskeleee.ilrlketidaqesnirvLqnvlesneqkiqkLeqdidqkerkC 132
                 e+s +++ a+++v++++++l +  + ++  +  +++s+++l +   +  ++++ a+e n+r+    +e+  + +q+  +  +++ ++C
  KOO25014.1  49 ELSLEKQAANRTVTQLQTQLSQMTARAERAEAQLSSSERQLADAaAEATRQRMAAHEANVRAQ--QVERAASGMQQAAESAMKRADAC 134
                 555566667777777777777777777777777777777775430344556666777776653..35556666666666666666666 PP

  == domain 2  score: 6.4 bits;  conditional E-value: 0.0062
                 HCCCCCCCCCCHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH CS
   Fib_alpha  24 dlllkyekdvkkdlekleneleeisnstkeaeelvkeikdslrekqkskk 73 
                 d++  +e  v+  ++k   ++++++++ k+++e + e++  l+++ ++++
  KOO25014.1 370 DVVAAQEAAVQAAIHKFAARVDQYQSELKHSKERIAELERALAKAGAKAP 419
                 677889999*****************************999999877665 PP

>> Pox_A_type_inc  Viral A-type inclusion protein repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   0.0      0.91   1.4e+03      14      20 ..      86      92 ..      84      93 .. 0.90
   2 ?    8.9   0.1   0.00093       1.4       2      19 ..     396     413 ..     395     414 .. 0.84

  Alignments for each domain:
  == domain 1  score: -0.6 bits;  conditional E-value: 0.91
  Pox_A_type_inc 14 ErqLseC 20
                    ErqL+++
      KOO25014.1 86 ERQLADA 92
                    9****96 PP

  == domain 2  score: 8.9 bits;  conditional E-value: 0.00093
  Pox_A_type_inc   2 EmsrlRsRIsDLErqLse 19 
                     E+   ++RI +LEr L++
      KOO25014.1 396 ELKHSKERIAELERALAK 413
                     566679**********97 PP

>> AAA_13  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.2   8.2   0.00028      0.42     327     450 ..      11     142 ..       3     279 .. 0.58
   2 ?    4.3   0.8    0.0086        13     418     470 ..     376     414 ..     349     418 .. 0.54

  Alignments for each domain:
  == domain 1  score: 9.2 bits;  conditional E-value: 0.00028
      AAA_13 327 kaeaealeeqLkglqraleaKrkepfksvelesvkakiesikklvaeineliakhNekvanleeekeeakkklelhlveeleseldeykkkykk..... 420
                 +ae + l+++L++++ +le  rk+ +++v   +++a  e ++ + +++n+++++   + +++++++e+a+ +l  ++ + ++++ ++  + +++     
  KOO25014.1  11 SAEGDGLRAKLREAEARLEGARKRHAEEVAGLEATATHE-LSLEKQAANRTVTQLQTQLSQMTARAERAEAQLSSSERQLADAAAEATRQRMAAheanv 108
                 555555566666666666666655555544333333332.44444555555555555555555555555555555555333333333332222200000 PP

      AAA_13 421 ....lekaieklekelkeeeaelkkleeeikeLe 450
                     +e+a++ ++++++ + +++ + e+e++e+ 
  KOO25014.1 109 raqqVERAASGMQQAAESAMKRADACEAEAREIA 142
                 0000223333333333333333333333333332 PP

  == domain 2  score: 4.3 bits;  conditional E-value: 0.0086
      AAA_13 418 ykklekaieklekelkeeeaelkkleeeikeLekqlrdekpaaeeinkeLkaf 470
                  +++++ai k  +++++ ++elk  +e+i+eLe              + L++ 
  KOO25014.1 376 EAAVQAAIHKFAARVDQYQSELKHSKERIAELE--------------RALAKA 414
                 233444444444455555555555555555554..............444444 PP

>> MscS_porin  Mechanosensitive ion channel porin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9  24.2   0.00033      0.49      35     156 ..      17     136 ..       7     144 .. 0.79
   2 ?   -2.4   0.0       1.8   2.7e+03     127     155 ..     264     292 ..     254     295 .. 0.58
   3 ?   11.5   0.2    0.0001      0.15      30      63 ..     381     414 ..     322     433 .. 0.69

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.00033
  MscS_porin  35 skkkaeelqkaiddaPkelrelqqelealqkkkeeaskeilaklsleeLeqrllqtssqlqelqeqlaqlnsqlvelqtrperaqqqltearqrlqeir 133
                  ++k++e + +++ a k+ +e  + lea  ++ e + +++ a+ + ++L+ +l q  ++ +++++ql++ + ql+ +    +r + +  ea+ r q+++
  KOO25014.1  17 LRAKLREAEARLEGARKRHAEEVAGLEAT-ATHELSLEKQAANRTVTQLQTQLSQMTARAERAEAQLSSSERQLADAAAEATRQRMAAHEANVRAQQVE 114
                 45556666666666666666666667777.99999**************************************************************** PP

  MscS_porin 134 nrLnstaaagealsqaqrtalqa 156
                 ++ ++ ++a  + +  + +a +a
  KOO25014.1 115 RAASGMQQAA-ESAMKRADACEA 136
                 *887775444.333344444444 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 1.8
  MscS_porin 127 qrlqeirnrLnstaaagealsqaqrtalq 155
                  r ++  ++L+st a+  al+ a+ +al+
  KOO25014.1 264 HRCDAAHAKLDSTLARLDALEMARLDALE 292
                 45555555555555555555555555555 PP

  == domain 3  score: 11.5 bits;  conditional E-value: 0.0001
  MscS_porin  30 dkidkskkkaeelqkaiddaPkelrelqqeleal 63 
                 ++i k++++ +++q  ++ + ++++el++ l++ 
  KOO25014.1 381 AAIHKFAARVDQYQSELKHSKERIAELERALAKA 414
                 4566666666666666666666666666666666 PP

>> GPW_gp25  Gene 25-like lysozyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.5   0.9      0.17   2.6e+02      36      72 ..      82     118 ..      49     132 .. 0.82
   2 ?    7.1   0.2    0.0031       4.7       4      24 ..     183     203 ..     180     235 .. 0.86
   3 ?   -2.8   0.0       3.6   5.4e+03       3      22 ..     233     252 ..     231     260 .. 0.80
   4 ?    3.2   0.0      0.05        74      39      75 ..     366     403 ..     354     413 .. 0.74

  Alignments for each domain:
  == domain 1  score: 1.5 bits;  conditional E-value: 0.17
                 HHCS--CHHHHHHHHHHHHHHHH-TTEEEEEEEE... CS
    GPW_gp25  36 lfaslsedreriareireailrfEpRirlvsveveve 72 
                 l++s+++ ++++a++ r+  + +E  +r ++ve +++
  KOO25014.1  82 LSSSERQLADAAAEATRQRMAAHEANVRAQQVERAAS 118
                 44455589999999***************99976444 PP

  == domain 2  score: 7.1 bits;  conditional E-value: 0.0031
                 HHHHHHHHHHHHCSBTTSSTT CS
    GPW_gp25   4 resvrrdleiLLntfpgervs 24 
                 +++vrr++e LL t+ ge  s
  KOO25014.1 183 ERQVRRSMETLLETRLGELSS 203
                 789***********8888766 PP

  == domain 3  score: -2.8 bits;  conditional E-value: 3.6
                 HHHHHHHHHHHHHCSBTTSS CS
    GPW_gp25   3 lresvrrdleiLLntfpger 22 
                  re+   d+ +L+ t+   r
  KOO25014.1 233 QREALLADIFMLFDTRHADR 252
                 68999999999999987666 PP

  == domain 4  score: 3.2 bits;  conditional E-value: 0.05
                 S--.CHHHHHHHHHHHHHHHH-TTEEEEEEEE...... CS
    GPW_gp25  39 sls.edreriareireailrfEpRirlvsveveveeed 75 
                 s + +  ++ ++++++ai +f  R+++ + e++ ++e 
  KOO25014.1 366 SAAsDVVAAQEAAVQAAIHKFAARVDQYQSELKHSKER 403
                 444467888899*************9988888655554 PP

>> DUF3450  Protein of unknown function (DUF3450)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.1  10.1     0.066        99      45      92 ..      46      93 ..      17     103 .. 0.66
   2 ?   11.8   8.3   7.5e-05      0.11      15     109 ..     107     201 ..      99     210 .. 0.92
   3 ?    5.0   2.5    0.0087        13       7      61 ..     357     412 ..     353     417 .. 0.68

  Alignments for each domain:
  == domain 1  score: 2.1 bits;  conditional E-value: 0.066
     DUF3450 45 ekqellaeyralkeeleslevyneqlerlvasqeqeiasleeqieeie 92
                 + el+ e +a+++ + +l+ + +q+++  + +e++++s e+q++++ 
  KOO25014.1 46 ATHELSLEKQAANRTVTQLQTQLSQMTARAERAEAQLSSSERQLADAA 93
                456677777777888888888888888888888888888888777643 PP

  == domain 2  score: 11.8 bits;  conditional E-value: 7.5e-05
     DUF3450  15 aatldqalkeaekavaaaaqsqkkidklddekqellaeyralkeeleslevyneqlerlvasqeqeiasleeqieeieeierelvpllekmidrL 109
                 +  ++q++ +a+  ++aa+++ k+ d+ + e++e++++  + k+e ++l+ +    ++++++ +  + sle +++  ++++r+++ lle+ + +L
  KOO25014.1 107 NVRAQQVERAASGMQQAAESAMKRADACEAEAREIASRRISWKDERAALTTELHAERAILDKERLHLRSLEASLAHERQVRRSMETLLETRLGEL 201
                 667899**********************************************************************************9988777 PP

  == domain 3  score: 5.0 bits;  conditional E-value: 0.0087
     DUF3450   7 lllasgalaatldqalkeaekavaaa.aqsqkkidklddekqellaeyralkeele 61 
                 llla++ + ++++++ +++e+av+aa  +  +++d+++ e +  ++++ +l++ l+
  KOO25014.1 357 LLLAASKAGSAASDVVAAQEAAVQAAiHKFAARVDQYQSELKHSKERIAELERALA 412
                 45555555666777777776666666367888888888888888888888877665 PP

>> XhlA  Haemolysin XhlA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.1       1.7   2.5e+03       8      27 ..      27      46 ..      17      73 .. 0.61
   2 ?    1.0   0.3      0.33   4.9e+02      18      42 ..      57      83 ..      42      93 .. 0.54
   3 ?   -0.8   0.1       1.3   1.9e+03      16      39 ..     104     129 ..      95     133 .. 0.80
   4 ?   -0.1   0.0      0.73   1.1e+03       6      25 ..     273     293 ..     269     299 .. 0.78
   5 ?    4.8   0.0     0.021        32       4      34 ..     388     418 ..     385     419 .. 0.85

  Alignments for each domain:
  == domain 1  score: -1.2 bits;  conditional E-value: 1.7
        XhlA  8 rietkldnleervdkleeka 27
                r+e+  + + e+v  le  a
  KOO25014.1 27 RLEGARKRHAEEVAGLEATA 46
                44444455555555555444 PP

  == domain 2  score: 1.0 bits;  conditional E-value: 0.33
        XhlA 18 e..rvdkleekaaeaeekiknleedlk 42
                   +v++l+   + + ++++ +e +l+
  KOO25014.1 57 AnrTVTQLQTQLSQMTARAERAEAQLS 83
                444455555555555555555544444 PP

  == domain 3  score: -0.8 bits;  conditional E-value: 1.3
        XhlA  16 lee..rvdkleekaaeaeekiknlee 39 
                 +e   r +++e+ a+ +++ ++++ +
  KOO25014.1 104 HEAnvRAQQVERAASGMQQAAESAMK 129
                 66666889999***999999998866 PP

  == domain 4  score: -0.1 bits;  conditional E-value: 0.73
        XhlA   6 lerietkldnlee.rvdklee 25 
                 l  + ++ld le+ r+d le 
  KOO25014.1 273 LDSTLARLDALEMaRLDALET 293
                 555567999999999999986 PP

  == domain 5  score: 4.8 bits;  conditional E-value: 0.021
        XhlA   4 erlerietkldnleervdkleekaaeaeeki 34 
                  r+ + +++l+  +er+ +le+  a+a +k+
  KOO25014.1 388 ARVDQYQSELKHSKERIAELERALAKAGAKA 418
                 678888999999999*********9998875 PP

>> FAM76  FAM76 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   4.5    0.0004       0.6     197     286 ..      37     125 ..       5     144 .. 0.67
   2 ?   -3.5   0.1       3.5   5.2e+03     236     273 ..     167     204 ..     148     227 .. 0.55
   3 ?   -0.0   0.0       0.3   4.5e+02     214     251 ..     376     413 ..     312     419 .. 0.62

  Alignments for each domain:
  == domain 1  score: 9.4 bits;  conditional E-value: 0.0004
       FAM76 197 aeekesnetskksldsnssdhlvavtqLkeeiaslkkqleqkdqellekdkkitelkaellekekelreklkelekeakekieklekkir 286
                  e ++ + t++++l+++++    +vtqL++++ ++  + e+ + +l++ +++++++ ae ++++   +e  + + +++++  + +++  +
  KOO25014.1  37 EEVAGLEATATHELSLEKQAANRTVTQLQTQLSQMTARAERAEAQLSSSERQLADAAAEATRQRMAAHE-ANVRAQQVERAASGMQQAAE 125
                 3344444455556666666666789**********************************9998765443.33333334444444444443 PP

  == domain 2  score: -3.5 bits;  conditional E-value: 3.5
       FAM76 236 eqkdqellekdkkitelkaellekekelreklkeleke 273
                 ++   +l + +  +++ +    ++e+ l+++l el +e
  KOO25014.1 167 DKERLHLRSLEASLAHERQVRRSMETLLETRLGELSSE 204
                 33333444444444444444445555555555554444 PP

  == domain 3  score: -0.0 bits;  conditional E-value: 0.3
       FAM76 214 ssdhlvavtqLkeeiaslkkqleqkdqellekdkkite 251
                       a+ ++  ++ + + +l++  + + e ++ +++
  KOO25014.1 376 EAAVQAAIHKFAARVDQYQSELKHSKERIAELERALAK 413
                 33333444444444455555555544455555544444 PP

>> FH2  Formin Homology 2 Domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.2   5.6   0.00079       1.2     265     346 ..      48     129 ..      32     145 .. 0.80
   2 ?   -1.4   0.1      0.66   9.8e+02     282     304 ..     380     402 ..     360     418 .. 0.55

  Alignments for each domain:
  == domain 1  score: 8.2 bits;  conditional E-value: 0.00079
                 HHTTTHHHCCTS-HHHHHHHHHHHHHHHHHHHHHHHHCCTTSSTT-THHHHHHH..HHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
         FH2 265 seLknvkkaakvnleslekevkklekglkklekelessekkeepsdkflevlke..flkeaeeklkkleeelkeakelvkelve 346
                  eL+  k+aa+  +++l++++++++ + + +e +l+sse+  +  d+  e++++    +ea+ + +++e+  + ++++++++++
  KOO25014.1  48 HELSLEKQAANRTVTQLQTQLSQMTARAERAEAQLSSSER--QLADAAAEATRQrmAAHEANVRAQQVERAASGMQQAAESAMK 129
                 57777899********************************..444444444444114578888999999999999999999886 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 0.66
                 HHHHHHHHHHHHHHHHHHHHCCT CS
         FH2 282 ekevkklekglkklekelessek 304
                 ++ ++k+  ++++ + el+ s++
  KOO25014.1 380 QAAIHKFAARVDQYQSELKHSKE 402
                 44444444444444444444443 PP

>> CLZ  C-terminal leucine zipper domain of cyclic nucleotide-gated channels
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.0       3.5   5.2e+03      22      55 ..      10      43 ..       6      48 .. 0.62
   2 ?   11.7   4.4   0.00017      0.26      22      63 ..      50      91 ..      41      99 .. 0.86
   3 ?   -1.0   0.4       1.6   2.3e+03      39      53 ..     189     204 ..     163     218 .. 0.56
   4 ?   -2.7   0.0       5.1   7.7e+03      31      34 ..     278     281 ..     263     293 .. 0.48
   5 ?    5.0   0.1     0.021        31      32      70 ..     371     409 ..     357     410 .. 0.80

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 3.5
         CLZ 22 agaeqkeleekverLessLeaLqtrlarLlaeye 55
                a+ae + l  k+++ e++Le   +r a  +a +e
  KOO25014.1 10 ASAEGDGLRAKLREAEARLEGARKRHAEEVAGLE 43
                5566666777777777777766666665555555 PP

  == domain 2  score: 11.7 bits;  conditional E-value: 0.00017
         CLZ 22 agaeqkeleekverLessLeaLqtrlarLlaeyessqrkLkq 63
                 + e++ +++ v++L+++L +++ r +r  a+++ss+r+L  
  KOO25014.1 50 LSLEKQAANRTVTQLQTQLSQMTARAERAEAQLSSSERQLAD 91
                447899999*****************************9975 PP

  == domain 3  score: -1.0 bits;  conditional E-value: 1.6
         CLZ  39 sLea.LqtrlarLlae 53 
                 s+e+ L+trl  L +e
  KOO25014.1 189 SMETlLETRLGELSSE 204
                 3332145555555554 PP

  == domain 4  score: -2.7 bits;  conditional E-value: 5.1
         CLZ  31 ekve 34 
                  +++
  KOO25014.1 278 ARLD 281
                 2222 PP

  == domain 5  score: 5.0 bits;  conditional E-value: 0.021
         CLZ  32 kverLessLeaLqtrlarLlaeyessqrkLkqRitkLEk 70 
                  v   e++++a   ++a  +++y+s  ++ k+Ri++LE+
  KOO25014.1 371 VVAAQEAAVQAAIHKFAARVDQYQSELKHSKERIAELER 409
                 556667777777889999999999999999*******97 PP

>> Lebercilin  Ciliary protein causing Leber congenital amaurosis disease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.1  16.6    0.0012       1.9      63     172 ..       8     114 ..       5     133 .. 0.79
   2 ?   -3.3   8.5       4.1   6.1e+03      91     157 ..     122     190 ..     109     210 .. 0.55
   3 ?    7.4   0.2    0.0021       3.2     120     147 ..     384     411 ..     345     418 .. 0.63

  Alignments for each domain:
  == domain 1  score: 8.1 bits;  conditional E-value: 0.0012
  Lebercilin  63 arhneEvrvlrerlRksqekerelekklkekeaellrlkdklkklkkLsedknLaereeLqkkLeeleakleekeekikeLerkleleeksfrrqlaae 161
                 ++ ++E   lr++lR+++++ + + k++ e+ a l+ + +    l+k + +++     +Lq++L++++a++e++e ++++ er+l  +  + +rq  a 
  KOO25014.1   8 HQASAEGDGLRAKLREAEARLEGARKRHAEEVAGLEATATHELSLEKQAANRTV---TQLQTQLSQMTARAERAEAQLSSSERQLADAAAEATRQRMAA 103
                 677888889999999988888888877777777777777777777777777766...9****************************9999999998888 PP

  Lebercilin 162 kkktkeaqeev 172
                  +    aq+  
  KOO25014.1 104 HEANVRAQQVE 114
                 77777666543 PP

  == domain 2  score: -3.3 bits;  conditional E-value: 4.1
  Lebercilin  91 kekeaellrlkdklkklkkLsedknL..aereeLqkkLeeleakleekeekikeLerkleleeksfrrq 157
                 + +e++++r++    + +++++ +    +er+ L+++L++ +a l++++  +++Le +l  e + +r +
  KOO25014.1 122 QAAESAMKRADACEAEAREIASRRISwkDERAALTTELHAERAILDKERLHLRSLEASLAHERQVRRSM 190
                 444444444444444444444333211157777777777777777777777777777776665554444 PP

  == domain 3  score: 7.4 bits;  conditional E-value: 0.0021
  Lebercilin 120 eeLqkkLeeleakleekeekikeLerkl 147
                  + + ++++ +++l++++e+i eLer l
  KOO25014.1 384 HKFAARVDQYQSELKHSKERIAELERAL 411
                 2334455566666666666666666554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (462 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2224  (0.124045); expected 358.6 (0.02)
Passed bias filter:                      644  (0.0359195); expected 358.6 (0.02)
Passed Vit filter:                       112  (0.00624686); expected 17.9 (0.001)
Passed Fwd filter:                        44  (0.00245412); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.99u 0.37s 00:00:01.36 Elapsed: 00:00:00.51
# Mc/sec: 2706.61
//
Query:       KOO25015.1  [L=624]
Description: major intrinsic protein, partial [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.7e-25   88.3  27.1    2.4e-24   86.3  15.7    2.5  3  MIP       Major intrinsic protein
  ------ inclusion threshold ------
        5.3    6.5   7.1       0.29   10.7   0.1    2.3  2  DUF1700   Protein of unknown function (DUF1700)


Domain annotation for each model (and alignments):
>> MIP  Major intrinsic protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.6   0.3      0.84   7.5e+03      33      52 ..     261     280 ..     242     301 .. 0.41
   2 !   16.3   3.6   6.7e-07     0.006      95     198 ..     317     410 ..     310     410 .. 0.70
   3 !   86.3  15.7   2.7e-28   2.4e-24      51     227 .]     383     582 ..     357     582 .. 0.83

  Alignments for each domain:
  == domain 1  score: -3.6 bits;  conditional E-value: 0.84
                 CSSCSSSSTTSSHHHHHHHH CS
         MIP  33 kkkvsslaslvsvtleaval 52 
                  +++ss+a + s ++ ++++
  KOO25015.1 261 PEAMSSAAIMKSYSMRSIVI 280
                 33333333222222222222 PP

  == domain 2  score: 16.3 bits;  conditional E-value: 6.7e-07
                 HHHHHHHHHHHHHHHHHHHCHHHHHHTTTTSSSSSTTSSHHHHHHHHHHHHHHHHHHHHHHCSTTSSSSTCHGHHHHHHHHHHHHHHHHHHHHST-SSH CS
         MIP  95 YivaQllGaivaaallklltkglesraglfanslkpglsagqalvvEiiltfvLvlvvfaltddkrkvslgelaplaigllvaliilvgipltGaamNp 193
                 Y++a +  ++++ a+l ++ + +    ++f     + ++     ++E++ tf+L +  f++  +   +s  +la l+++ l ++   +++  +G+ mNp
  KOO25015.1 317 YLIAIIE-GVCGGAMLTMIASTV--LPEAFE-IGGNIVG--FVYAMEFVTTFFLSM--FVALSPLFGAS--KLAELSMFALTVALLSMAGSTSGCHMNP 405
                 5555443.467777777777664..334443.3344444..44679******9975..55566665555..99******999999999999******** PP

                 HHHHH CS
         MIP 194 Arslg 198
                 A s g
  KOO25015.1 406 AVSVG 410
                 *9987 PP

  == domain 3  score: 86.3 bits;  conditional E-value: 2.7e-28
                 HHHHHHHHHHHHHHHHHCHT-S-SHHHHHHHHH.......TTSSSHHHHHHHHHHHHHHHHHHHHH.....HHHHCHHHHHHTTTTSSSSSTTSSHHHH CS
         MIP  51 alafglalavlvylaagiSGaHlNPavTlallv.......arkisllrailYivaQllGaivaaal.....lklltkglesraglfanslkpglsagqa 137
                 ++ f+l++a l+++a+  SG H+NPav ++l+v       a  +++++ +lY+ aQl+Gai+aa++     l+l t+g++  a+    ++ p+ +ag+a
  KOO25015.1 383 SM-FALTVA-LLSMAGSTSGCHMNPAVSVGLYVrsirspiAEGFPARKLALYVLAQLMGAICAALVaisllLHLPTVGATAMADIEIGFPFPAAGAGRA 479
                 44.555554.5678888**************983333332568********************9862121155555666889999999*********** PP

                 HHHHHHHHHHHHHHHHHHCSTTSSSSTCHGHHHHHHHHHHHHHHHHHHHHST-SSHHHHHHHHHHHTH..............STTTTHHHHHHHHHHHH CS
         MIP 138 lvvEiiltfvLvlvvfaltddkrkvslgelaplaigllvaliilvgipltGaamNpArslgpavvlnk..............fedhwvylvGPliGail 222
                 + +E+i t ++v+v++ +++ ++ ++  +++++aig+++a +  + +p++G  +NpA  l  av++                 + +wvy+v+P +G+++
  KOO25015.1 480 FLAEVIGTTAVVYVMLNVATVRHLAR-NSFFGIAIGITIASVGSAIGPVSGGCLNPAVGLLGAVATAWhagshsslhrlhtdVSPIWVYFVAPPLGGVV 577
                 *****************999888888.677****************************987777765559*********999999************** PP

                 HHHHH CS
         MIP 223 galvY 227
                 gal++
  KOO25015.1 578 GALLF 582
                 **986 PP

>> DUF1700  Protein of unknown function (DUF1700)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.1   3.2e-05      0.29      31     145 ..     168     292 ..     153     302 .. 0.70
   2 ?   -3.4   2.7      0.65   5.8e+03      83     103 ..     356     376 ..     318     398 .. 0.53

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 3.2e-05
     DUF1700  31 ehFesgkeeGksEeeivkeLgdPkeIakeltaesaikkaekkkslknvskailavigLsl..lnlilvlipli..viislvlsllvvalallvsplvll 125
                   F+ g+ +  s ++i k L + +  a e +ae+a k a+++  + +   ai++ +g++l  +   +vl +l   + is ++++ v++++    p ++ 
  KOO25015.1 168 AKFRAGITHVVSSSKITKMLEENRREAVEKRAEEAAKAASHQGHQGGKNAAIMIWLGIGLdaIPESFVLGILAnsGNISSLITFTVGVFLAN-LPEAMS 265
                 6799*****************************************99999999877666522555788887761145666777777776653.355555 PP

     DUF1700 126 vksllkgfeelsln.......vfvsig 145
                  + ++k++   s+        +fv+ g
  KOO25015.1 266 SAAIMKSYSMRSIVimgmwsaIFVGTG 292
                 566666555444432221123444433 PP

  == domain 2  score: -3.4 bits;  conditional E-value: 0.65
     DUF1700  83 lavigLsllnlilvliplivi 103
                 + ++  ++l++++ l pl++ 
  KOO25015.1 356 MEFVTTFFLSMFVALSPLFGA 376
                 233444444444444444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (624 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1045  (0.0582855); expected 358.6 (0.02)
Passed bias filter:                      566  (0.031569); expected 358.6 (0.02)
Passed Vit filter:                        64  (0.00356964); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.64u 0.27s 00:00:00.91 Elapsed: 00:00:00.44
# Mc/sec: 4306.65
//
Query:       KOO25016.1  [L=380]
Description: cyclic nucleotide-binding protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    4.8e-11   42.5  23.7    1.1e-08   34.7   3.7    2.9  3  Zip             ZIP Zinc transporter
  ------ inclusion threshold ------
      0.049   13.2   0.1       0.11   12.0   0.1    1.6  1  DUF1700         Protein of unknown function (DUF1700)
        5.8    6.8   5.6         23    4.8   0.1    2.6  3  Tir_receptor_C  Translocated intimin receptor (Tir) C-terminu


Domain annotation for each model (and alignments):
>> Zip  ZIP Zinc transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.5   7.3   2.6e-06     0.015     242     332 ..      22     105 ..      16     106 .. 0.92
   2 !   34.7   3.7   1.8e-12   1.1e-08     138     302 ..     160     341 ..     113     344 .. 0.70
   3 !    7.6   1.3   0.00033         2      16      96 ..     297     368 ..     295     376 .. 0.85

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 2.6e-06
         Zip 242 rkkavllnllfaltaplGiliGilvrsisessgaeivsgillalsaGtflYvalvellphEllnekgssslkqsllqllglllGfalmlll 332
                   +a  + ll+al+ ++G++iG+       +  +  v++ ++a+ +G ++     el    +l+++++++l+ +l ++++ ++G a++++l
  KOO25016.1  22 FLNAAGWGLLSALSLVIGAAIGVT------AAPSPKVNAAMMAFGGGALIQALSIELFG-AILQHQSDTGLGCTLAAIAAAVCGGAFFSFL 105
                 56677899****************......99**************************8.89999989******************99987 PP

  == domain 2  score: 34.7 bits;  conditional E-value: 1.8e-12
         Zip 138 k..............edhvaeadtdadskeelrngkqeksesekeqaseeedkeklaslkvraiilllglilHsfidGLAlG...vssssstgislfiA 219
                                + +v++ + ++   ee r++  ek  +e+++    ++++  ++ k +ai++ lg++l+ +++ + lG    s + s++i+ ++ 
  KOO25016.1 160 EeaaaaarakfragiTHVVSSSKITKML-EENRREAVEKRAEEAAK---AASHQGHQGGKNAAIMIWLGIGLDAIPESFVLGilaNSGNISSLITFTVG 254
                 3444444444444432233333333333.33333344444444443...34688888999**********************9766778899******* PP

         Zip 220 vllHelpeelglgaiLlkaglsrkkavllnllfaltaplGiliGilvrs.......isessgaeivsgillalsaGtflYvalvellphE 302
                 v+l +lpe+++  ai+    +s++++v++ + +a++   G++ G++ +         + + ga+ + +i++++ +G +l +    +lp E
  KOO25016.1 255 VFLANLPEAMSSAAIMK--SYSMRSIVIMGMWSAIFVGTGLGAGLGAICfpplgpgEQRTLGASYLIAIIEGVCGGAMLTMIASTVLP-E 341
                 **************875..6888899999999998888888888874447799887788889999999**********9998888888.6 PP

  == domain 3  score: 7.6 bits;  conditional E-value: 0.00033
         Zip  16 llgllgpllvpkiskl.lsklllslllafavGvllgtaflhLlPealealeesqleeehthplagllvllGflllllvekll 96 
                 l ++++p l p  +++   ++l++++    +G +l      +lPea+e  ++           +g+++llGfl  llv ++ 
  KOO25016.1 297 LGAICFPPLGPGEQRTlGASYLIAIIEGVCGGAMLTMIASTVLPEAFEIGGN----------IVGFVCLLGFLSALLVKSIG 368
                 566777888888888878899***************************5555..........79************999876 PP

>> DUF1700  Protein of unknown function (DUF1700)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.1   1.9e-05      0.11      31     145 ..     168     292 ..     153     302 .. 0.70

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 1.9e-05
     DUF1700  31 ehFesgkeeGksEeeivkeLgdPkeIakeltaesaikkaekkkslknvskailavigLsl..lnlilvlipli..viislvlsllvvalallvsplvll 125
                   F+ g+ +  s ++i k L + +  a e +ae+a k a+++  + +   ai++ +g++l  +   +vl +l   + is ++++ v++++    p ++ 
  KOO25016.1 168 AKFRAGITHVVSSSKITKMLEENRREAVEKRAEEAAKAASHQGHQGGKNAAIMIWLGIGLdaIPESFVLGILAnsGNISSLITFTVGVFLAN-LPEAMS 265
                 6799*****************************************99999999877666522555788887761145666777777776653.355555 PP

     DUF1700 126 vksllkgfeelsln.......vfvsig 145
                  + ++k++   s+        +fv+ g
  KOO25016.1 266 SAAIMKSYSMRSIVimgmwsaIFVGTG 292
                 566666555444432221123444433 PP

>> Tir_receptor_C  Translocated intimin receptor (Tir) C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.0   0.3    0.0071        43      22      49 ..      20      47 ..      16      54 .. 0.86
   2 ?   -2.2   0.1      0.57   3.4e+03      96     117 ..     154     175 ..     121     213 .. 0.58
   3 ?    4.8   0.1    0.0039        23      26      62 ..     277     313 ..     270     323 .. 0.86

  Alignments for each domain:
  == domain 1  score: 4.0 bits;  conditional E-value: 0.0071
  Tir_receptor_C 22 lnvssGiGyGlsgalilgGGiGagvtaa 49
                    ln    +G+Gl +al l  G  +gvtaa
      KOO25016.1 20 LNFLNAAGWGLLSALSLVIGAAIGVTAA 47
                    5666789********9999999999997 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 0.57
  Tir_receptor_C  96 tassrrdsqasvasslsdtsst 117
                     +   r+++ a+ a   + +  t
      KOO25016.1 154 AERIRKEEAAAAARAKFRAGIT 175
                     3333333333333333333333 PP

  == domain 3  score: 4.8 bits;  conditional E-value: 0.0039
  Tir_receptor_C  26 sGiGyGlsgalilgGGiGagvtaalhrrnqPveqttt 62 
                     s +  G+ +a+ +g G+Gag+ a+      P eq+t 
      KOO25016.1 277 SIVIMGMWSAIFVGTGLGAGLGAICFPPLGPGEQRTL 313
                     55667999****************9999999999986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (380 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1107  (0.0617435); expected 358.6 (0.02)
Passed bias filter:                      637  (0.035529); expected 358.6 (0.02)
Passed Vit filter:                        59  (0.00329076); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.51u 0.25s 00:00:00.76 Elapsed: 00:00:00.41
# Mc/sec: 2806.12
//
Query:       KOO25017.1  [L=1270]
Description: hypothetical protein Ctob_004002, partial [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    4.5e-08   33.2  11.6      1e-07   32.1  11.6    1.7  1  Ferric_reduct  Ferric reductase like transmembrane component
  ------ inclusion threshold ------
      0.043   13.9   0.6      0.094   12.8   0.6    1.5  1  Resolvase      Resolvase, N terminal domain
       0.06   14.0   0.0         10    6.8   0.0    2.6  2  SlyX           SlyX
      0.065   12.9   2.1        5.2    6.7   0.5    2.2  2  Lebercilin     Ciliary protein causing Leber congenital amaur


Domain annotation for each model (and alignments):
>> Ferric_reduct  Ferric reductase like transmembrane component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.1  11.6   2.3e-11     1e-07       5     124 ..     618     741 ..     612     742 .. 0.76

  Alignments for each domain:
  == domain 1  score: 32.1 bits;  conditional E-value: 2.3e-11
  Ferric_reduct   5 alillplallla..lRnnflepltglsldklllfHkwlgvlafllallHvilyllnflrfsal..deerlldsllkkpynllGvlalllliilait 96 
                    +l++l + l+l   +R   l  + g+++++++ +H+ +g  ++++  lHv++   ++l +        +++++ + +  +++ v ++ ll++ +++
     KOO25017.1 618 SLLNLLVGLVLLpvGRA--L-VVVGVPHERAVSYHRTIGTSIIAVGALHVAVEHAHWLIKRTWlaFTFNYVHTHTGQDVWPWAVPMMNLLFVALLV 710
                    44555554443323444..3.479**********************************97766886677777777777777888766555555554 PP

  Ferric_reduct  97 S....lkfirrrlsyelFyylHhllyvaylll 124
                    +    l++ir r++y++F+++H+++++ +ll+
     KOO25017.1 711 AslaaLSPIR-RRYYNVFLAMHVVVMPCFLLG 741
                    445559****.999**************9996 PP

>> Resolvase  Resolvase, N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.6   2.1e-05     0.094       6     144 ..    1077    1221 ..    1073    1222 .. 0.86

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 2.1e-05
                  EES---..--THHHHHHHHHHHH-S--..SE....EEEE.S-TT-TT...-HHHHHHHHHHTT-EE.EEEESSCCCC-S...S-HHHHHHHHHTT-E CS
   Resolvase    6 RvStee..qddslerQkealrayakenglkivk.efeDkgvSGakle...RpglkrllaalregkgdvlvvekldRLaRsvrdlltlleelrekgvs 96  
                  R S++     +sl++ ++ l+  ++e +  +   +  + ++ +  ++   Rpg +++l +lre k + l + +l   +Rs+rd++  ++  +  + +
  KOO25017.1 1077 RLSSAAmhTLTSLQADIDSLHSKCNELRQSLGHpTTLESEARALVKDggsRPGTEQALLQLRESKASELQMLSLRCCGRSTRDCHGAVTGPSGSRFN 1173
                  77777754334889999999999977733343367777778888876778*********************************************** PP

                  EEESS..SS----HHHHHHHHHHHHHHHHHHHHHCT-TTHHHHHHHHH CS
   Resolvase   97 lvsldegidtstpmgrlllqilaalaeferelirertkeglaaakakG 144 
                  l+ l    d ++++g+ l +  +   +++re+++ r   g + a++ G
  KOO25017.1 1174 LKLLLAVADCMSTQGKELAEQTKRHEALQRENRALRDLTGQRSAAEGG 1221
                  **9997799******9999999999***********999988888765 PP

>> SlyX  SlyX
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.2   0.0     0.015        66      25      48 ..    1085    1108 ..    1072    1128 .. 0.81
   2 ?    6.8   0.0    0.0023        10      22      56 ..    1187    1221 ..    1178    1233 .. 0.79

  Alignments for each domain:
  == domain 1  score: 4.2 bits;  conditional E-value: 0.015
                  HHHHHHHHHHHHHHHHHHHHHT-X CS
        SlyX   25 vvaeqqqqidrlqrqlrllaerlk 48  
                  +++  q +id l+ ++++l++ l 
  KOO25017.1 1085 TLTSLQADIDSLHSKCNELRQSLG 1108
                  78999***************9993 PP

  == domain 2  score: 6.8 bits;  conditional E-value: 0.0023
                  HHHHHHHHHHHHHHHHHHHHHHHHT-XXXXXXXXX CS
        SlyX   22 Lndvvaeqqqqidrlqrqlrllaerlkeleessga 56  
                    +++aeq ++ ++lqr+ r+l++   ++++++g+
  KOO25017.1 1187 QGKELAEQTKRHEALQRENRALRDLTGQRSAAEGG 1221
                  56789******************988666666554 PP

>> Lebercilin  Ciliary protein causing Leber congenital amaurosis disease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.5   0.0    0.0027        12       4      32 ..    1077    1105 ..    1075    1107 .. 0.93
   2 ?    6.7   0.5    0.0012       5.2      13      43 ..    1184    1214 ..    1174    1218 .. 0.81

  Alignments for each domain:
  == domain 1  score: 5.5 bits;  conditional E-value: 0.0027
  Lebercilin    4 RvlsarllkikeLqnelaelqskleelrk 32  
                  R+ sa ++ +++Lq  ++ l+sk +elr+
  KOO25017.1 1077 RLSSAAMHTLTSLQADIDSLHSKCNELRQ 1105
                  899***********************985 PP

  == domain 2  score: 6.7 bits;  conditional E-value: 0.0012
  Lebercilin   13 ikeLqnelaelqskleelrkEnklLkrlqkr 43  
                  +  + +elae+ ++ e+l++En++L++l   
  KOO25017.1 1184 MSTQGKELAEQTKRHEALQRENRALRDLTGQ 1214
                  6677899*******************99765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1270 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       808  (0.0450667); expected 358.6 (0.02)
Passed bias filter:                      500  (0.0278878); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.82u 0.31s 00:00:01.12 Elapsed: 00:00:00.46
# Mc/sec: 8304.60
//
Query:       KOO25018.1  [L=1727]
Description: hypothetical protein Ctob_004000 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
   1.1e-104  350.1   0.0   1.5e-104  349.7   0.0    1.2  1  DUF4336       Domain of unknown function (DUF4336)
      7e-12   45.3   0.0    7.8e-05   22.7   0.0    2.7  2  cNMP_binding  Cyclic nucleotide-binding domain
  ------ inclusion threshold ------
       0.88    9.7   2.9         74    3.6   0.0    4.5  4  RPAP1_C       RPAP1-like, C-terminal


Domain annotation for each model (and alignments):
>> DUF4336  Domain of unknown function (DUF4336)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  349.7   0.0  2.5e-108  1.5e-104       1     318 []      85     403 ..      85     403 .. 0.95

  Alignments for each domain:
  == domain 1  score: 349.7 bits;  conditional E-value: 2.5e-108
     DUF4336   1 pdeiwtfeQlqgilyvavpiRmtvvkLekggLlvyaPvapTkellelvkeleaehgevkyivlptvalEHKvfvgpfarkfpkAevwvapgqwsfPlnl 99 
                 p++ wtf+Ql g++yv+vpiRmtv+++++ggLlvyaPvapTke+l+l++ l ++hg++++i+lp+va EHKv +gpfar+f++Ae+w ++ q++fPlnl
  KOO25018.1  85 PGRAWTFDQLLGVFYVHVPIRMTVIRMDAGGLLVYAPVAPTKECLALLQPLIDAHGPIRHIILPSVAPEHKVLAGPFARQFRNAEFWTTDAQYAFPLNL 183
                 7899*********************************************************************************************** PP

     DUF4336 100 plellglpkkrtkvlpedseevPwadeidvkiLgplelglgkfaevaffhkasktllvtDavvsvpeeppeiikldpep...llfhardkadeevedtp 195
                 p+++lg+p k +++ p+ +    ++ e+++++++  + ++  ++++a+fh++s+tllv+Davvs+++epp+i++ +pe+   ll+hard++ e+v dtp
  KOO25018.1 184 PATWLGFPGKVKQLPPRGD--GLFGGEFKLAVISAKASRESIYQDAALFHEPSRTLLVCDAVVSINAEPPAILTAEPEYtraLLYHARDDPLEKVVDTP 280
                 *******999999888766..78**********999999999*******************************998887777***************** PP

     DUF4336 196 enrrkGWkrivLfalyfkpsalevkklkevlke.kaperskkayfGlypfeWeedweksfealekkgrllvaPilqtlilnrapeevlawvdkvakwkf 293
                 e rrkGW+ri+Lf ++f+p +l++ + +  l+  +++ + +  + G+ pf+W+++   +fe++++ g  +v Pi+q +il+rape+ +awvd++++w +
  KOO25018.1 281 EVRRKGWQRIALFGNFFMPGSLRMLDQSVWLSAaSKSPMPELGWGGVLPFTWTDKTPLAFERFTQGGAPVVVPIIQ-IILSRAPEASAAWVDTICSWPV 378
                 **********************998887777776444445889999*****************************9.9********************* PP

     DUF4336 294 eriipaHfdapieatpkefraafsf 318
                 e++ipaHfdapi++tp+++r+af+f
  KOO25018.1 379 ETVIPAHFDAPIKVTPSSLRKAFAF 403
                 ***********************98 PP

>> cNMP_binding  Cyclic nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.7   0.1   1.1e-07   0.00067       6      82 ..    1453    1541 ..    1449    1542 .. 0.80
   2 !   22.7   0.0   1.3e-08   7.8e-05       4      87 ..    1590    1678 ..    1587    1680 .. 0.82

  Alignments for each domain:
  == domain 1  score: 19.7 bits;  conditional E-value: 1.1e-07
                    TT-EEE-TTSB-SEEEEEEES-EEEEEEETTS.EEEEEEE...-TTEEESHHHHH...........HTS--SSEEEESSTEEEEEEEHHHH CS
  cNMP_binding    6 agevifrqGdpadslyivlsGevrvyrlsedgkevvlavl...gpGdlfGelall...........tgeprtatvvAltdsellalprddf 82  
                    +  v++r+G +a s+++++ G+v++  +sedg  ++++v    ++G  fG  +l             g +r+atv Al+ s l++++ +d+
    KOO25018.1 1453 RYGVVYRAGAAASSFFVLTHGSVQI--VSEDGPPQTITVErgaRQGIAFGLESLGglgsggavsggSGLCRQATVCALEASSLVVFSTKDM 1541
                    5569*********************..7888855555533334666669998887888888888765567***************999887 PP

  == domain 2  score: 22.7 bits;  conditional E-value: 1.3e-08
                    E-TT-EEE-TTSB-SEEEEEEES-EEEEEEETTS.EEEEEEE-TT.....EEESHHHHH.HTS--SSEEEESSTEEEEEEEHHHHHHHHH CS
  cNMP_binding    4 fkagevifrqGdpadslyivlsGevrvyrlsedgkevvlavlgpG.....dlfGelall.tgeprtatvvAltdsellalprddflellq 87  
                    f +++  f +G ++d+l+i+l G++ ++++s   ++ +  ++g+G      ++G  +ll  +++r+++vv+ t++  l+lp+ +++++l+
    KOO25018.1 1590 FNPNTPFFSAGGACDKLFILLNGSMVISQRSTTIAT-LHSTVGEGstvwhPFVGAEGLLdAETRRPYDVVTCTPANALVLPAHALKRFLK 1678
                    7899999********************644333333.555889995554457899****65566***********************997 PP

>> RPAP1_C  RPAP1-like, C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.1      0.73   4.4e+03      27      40 ..     638     651 ..     618     653 .. 0.75
   2 ?    1.5   0.0     0.055   3.3e+02      29      40 ..     685     696 ..     668     708 .. 0.85
   3 ?    3.6   0.0     0.012        74      28      40 ..     763     775 ..     751     777 .. 0.87
   4 ?    0.3   0.0      0.13   7.9e+02      42      61 ..    1609    1628 ..    1598    1631 .. 0.78

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 0.73
     RPAP1_C  27 gdepalaGYTlkEl 40 
                  +e+ +aG Tl E+
  KOO25018.1 638 THEARAAGHTLAEA 651
                 359999*****996 PP

  == domain 2  score: 1.5 bits;  conditional E-value: 0.055
     RPAP1_C  29 epalaGYTlkEl 40 
                 e+++aGYT +E+
  KOO25018.1 685 EAKAAGYTCSEV 696
                 788999999997 PP

  == domain 3  score: 3.6 bits;  conditional E-value: 0.012
     RPAP1_C  28 depalaGYTlkEl 40 
                 de++ aGYTl+E+
  KOO25018.1 763 DEAKDAGYTLSEM 775
                 689999***9997 PP

  == domain 4  score: 0.3 bits;  conditional E-value: 0.13
     RPAP1_C   42 qLarSavpsQralalqtLgr 61  
                   L  S v sQr + + tL +
  KOO25018.1 1609 LLNGSMVISQRSTTIATLHS 1628
                  355699**********9975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1727 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       373  (0.0208043); expected 358.6 (0.02)
Passed bias filter:                      258  (0.0143901); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.84u 0.29s 00:00:01.12 Elapsed: 00:00:00.46
# Mc/sec: 11248.04
//
Query:       KOO25019.1  [L=276]
Description: glutathione-dependent formaldehyde dehydrogenase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    6.9e-22   77.8   0.2    1.2e-21   77.0   0.2    1.4  1  ADH_zinc_N      Zinc-binding dehydrogenase
      0.002   17.7   0.2     0.0032   17.1   0.2    1.3  1  UDPG_MGDP_dh_N  UDP-glucose/GDP-mannose dehydrogenase family,
     0.0077   15.6   0.0      0.014   14.8   0.0    1.3  1  2-Hacid_dh_C    D-isomer specific 2-hydroxyacid dehydrogenase
  ------ inclusion threshold ------
      0.013   15.8   0.0      0.024   14.9   0.0    1.5  1  TrkA_N          TrkA-N domain
      0.018   14.3   0.3      0.028   13.7   0.3    1.3  1  AlaDh_PNT_C     Alanine dehydrogenase/PNT, C-terminal domain


Domain annotation for each model (and alignments):
>> ADH_zinc_N  Zinc-binding dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   77.0   0.2   3.5e-25   1.2e-21       1     121 [.     101     226 ..     101     235 .. 0.85

  Alignments for each domain:
  == domain 1  score: 77.0 bits;  conditional E-value: 3.5e-25
                 HHHHHHHHHHHHTT-.EEEEEESSHHHHHHHHHTTESEEEETTTC.H.HHHHHHHHTT.TSSEEEEEESSCSHHHHHHHHHCEEEE.EEEEECSCTSSE CS
  ADH_zinc_N   1 gvGlaavqlAkalGa.eviavdsseeklelakklGadevinykea.d.lverikeltg.gegvdvvfecvGsgatleaalkllkpg.GrlvvvGggkge 94 
                 +vGla+vq+Aka+Ga  +i++d++e+k+++ak+lG++ ++n+k+  + +++ +  +   g g+d+ f+++G+ +++++al+++++g G ++++G+   +
  KOO25019.1 101 AVGLAVVQAAKAIGAhPIIGIDVNEKKFAIAKQLGCTDCVNPKDHdKpMQQVLIGMSPtGFGYDYTFDATGNTDVMRSALEAAHRGwGLMTIIGVAAAG 199
                 69*************99999**********************7754445555555554499**********************************7777 PP

                 EEEEHHHHH.HTT-EEEEE-SSCHHHHH CS
  ADH_zinc_N  95 eefdlrnll.lkeksilGsllgslreef 121
                 +e+++r++   + ++ +G+ +g+ +++ 
  KOO25019.1 200 KEISTRPFQfVTGRRCTGTAFGG-WKTR 226
                 7799999555*************.4443 PP

>> UDPG_MGDP_dh_N  UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   0.2   8.9e-07    0.0032       2      39 ..      93     131 ..      92     145 .. 0.87

  Alignments for each domain:
  == domain 1  score: 17.1 bits;  conditional E-value: 8.9e-07
                     EEEEE--STTHHHHHHHHHHCT.SEEEEE-S-HHHHHHH CS
  UDPG_MGDP_dh_N   2 kisviGlGYvGlvtaavlaeig.hevigvDideekvdkl 39 
                      ++v+GlG vGl    +  +ig h +ig+D++e+k +  
      KOO25019.1  93 SVAVFGLGAVGLAVVQAAKAIGaHPIIGIDVNEKKFAIA 131
                     589*********9999988888899*********97655 PP

>> 2-Hacid_dh_C  D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.0   3.9e-06     0.014      38      80 ..      93     136 ..      87     145 .. 0.86

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 3.9e-06
                   EEEEES-SHHHHHHHHHHHHTT-.EEEEESSSHHHHHCHHHHTC CS
  2-Hacid_dh_C  38 tvGiiGlGrIGqavakrlkafgm.kviaydrskkkeeeeeelgv 80 
                    v+++GlG++G av + +ka+g+  +i++d+++kk + +++lg+
    KOO25019.1  93 SVAVFGLGAVGLAVVQAAKAIGAhPIIGIDVNEKKFAIAKQLGC 136
                   699********************7899***99987666666665 PP

>> TrkA_N  TrkA-N domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.9   0.0   6.8e-06     0.024       1      41 [.      94     135 ..      94     148 .. 0.88

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 6.8e-06
                 EEEES-SHHHHHHHHHHHH.TTEEEEEEESSHHHHHHHHHTT CS
      TrkA_N   1 iiiiGlGrvGrslaeeLse.ggkdvvvidkdeerveelreeg 41 
                 +++ GlG vG ++++  ++ g +++++id +e++++ +++ g
  KOO25019.1  94 VAVFGLGAVGLAVVQAAKAiGAHPIIGIDVNEKKFAIAKQLG 135
                 689****************99889**********99998887 PP

>> AlaDh_PNT_C  Alanine dehydrogenase/PNT, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.3   7.7e-06     0.028      23      71 ..      88     135 ..      71     155 .. 0.79

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 7.7e-06
                  ETCB---EEEEESTSHHHHHHHHHHHHTT-E.EEEEESSHHHHHHHHHTT CS
  AlaDh_PNT_C  23 vpgvepakvlviGgGvaGlqAiatakglgak.VtvlDvrparleqleslg 71 
                  v+    + v v+G G +Gl+ +++ak++ga+ +  +Dv++++    ++lg
   KOO25019.1  88 VE--PFSSVAVFGLGAVGLAVVQAAKAIGAHpIIGIDVNEKKFAIAKQLG 135
                  33..4578**********************858889**999887777766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (276 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       336  (0.0187406); expected 358.6 (0.02)
Passed bias filter:                      268  (0.0149478); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.44u 0.26s 00:00:00.70 Elapsed: 00:00:00.42
# Mc/sec: 1954.18
//
Query:       KOO25020.1  [L=213]
Description: hypothetical protein Ctob_011994 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
     0.0086   15.2   0.6      0.015   14.3   0.6    1.3  1  DUF973    Protein of unknown function (DUF973)
  ------ inclusion threshold ------
      0.029   14.2   3.0      0.029   14.2   3.0    1.8  2  DUF4386   Domain of unknown function (DUF4386)
       0.07   13.4   1.7        7.8    6.9   0.3    2.3  2  DAD       DAD family
        0.1   12.7  10.0       0.15   12.1   6.2    2.2  2  CD20      CD20-like family
       0.23   11.4   0.1       0.38   10.7   0.1    1.3  1  Bys1      Blastomyces yeast-phase-specific protein


Domain annotation for each model (and alignments):
>> DUF973  Protein of unknown function (DUF973)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.3   0.6   4.3e-06     0.015     112     175 ..      41     109 ..      16     112 .. 0.80

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 4.3e-06
      DUF973 112 iigvilaivsll....slilslillgviilligiilaliGqillglsfyklGe.vYnnglikigGilii 175
                  +g+i ai++ll    ++++  +   +i ++i + la+iG i ++++++k+G+    ng +k+ G l i
  KOO25020.1  41 WFGMIAAISVLLassaKVQTRYVKGFAICAAICAFLASIGAIFVAVAIRKMGHrEIHNGCVKMPGALAI 109
                 578888887777877666777777778889999*******************62589999999998865 PP

>> DUF4386  Domain of unknown function (DUF4386)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   3.0   8.2e-06     0.029     146     202 ..      25      81 ..      18      86 .. 0.89
   2 ?   -1.0   0.1      0.37   1.3e+03       5      19 ..     171     184 ..     159     198 .. 0.51

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 8.2e-06
     DUF4386 146 lgllllrsrllPrwlgllgllagllyllasfaelllpdlsvlvlllalpgalgelal 202
                 + ll++  ++l+ + g++g++a++++llas a++ +  ++++++ +a+ ++l++++ 
  KOO25020.1  25 TVLLIFSMTSLNNIQGWFGMIAAISVLLASSAKVQTRYVKGFAICAAICAFLASIGA 81 
                 678999***************************87777999*999999999998865 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 0.37
     DUF4386   5 lylliivlgiiaell 19 
                 +++++++l+ +a l+
  KOO25020.1 171 ALVMLFALFQFA-LF 184
                 233333333333.22 PP

>> DAD  DAD family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.9   0.3    0.0022       7.8      28      71 ..      50      90 ..      29     105 .. 0.77
   2 ?    5.8   0.1    0.0045        16      39      73 ..     171     205 ..     149     209 .. 0.83

  Alignments for each domain:
  == domain 1  score: 6.9 bits;  conditional E-value: 0.0022
                HHHHHHHHHHHHHHHHT--SSCHHHHHHHHHHHHHHHHHHHHHH CS
         DAD 28 lflvlvgvlqfvYcvlvgnfpfnaflsgfiatvgqfvLtvsLRl 71
                ++l  ++ +q   +  v+ f + a + +f+a++g + ++v++R 
  KOO25020.1 50 VLLASSAKVQ---TRYVKGFAICAAICAFLASIGAIFVAVAIRK 90
                3334444444...445789***********************96 PP

  == domain 2  score: 5.8 bits;  conditional E-value: 0.0045
                 HHHHHT--SSCHHHHHHHHHHHHHHHHHHHHHHHH CS
         DAD  39 vYcvlvgnfpfnaflsgfiatvgqfvLtvsLRlql 73 
                 + ++l+  f f  f+s++++t  + vL  s+R + 
  KOO25020.1 171 ALVMLFALFQFALFVSAIVVTKRSRVLEQSYRSRA 205
                 55788899***********************9865 PP

>> CD20  CD20-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   6.2   4.3e-05      0.15      36      94 ..      41      97 ..      23     103 .. 0.79
   2 ?    1.6   0.1     0.075   2.7e+02     128     151 ..     166     189 ..     149     192 .. 0.75

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 4.3e-05
        CD20 36 WgGivfiisGvlgiaaekrstkllvklslllnlvslvlalaGiillilslalltsaeel 94
                W G++++is +l+  a+ +++   vk++ ++ +++++la +G i++++ + ++++ e +
  KOO25020.1 41 WFGMIAAISVLLASSAKVQTR--YVKGFAICAAICAFLASIGAIFVAVAIRKMGHREIH 97
                888888888666555555555..5************************99999887765 PP

  == domain 2  score: 1.6 bits;  conditional E-value: 0.075
        CD20 128 slltgilavlliltilellvslls 151
                  +l ++l++l++l  + l+vs+++
  KOO25020.1 166 ADLGSALVMLFALFQFALFVSAIV 189
                 567788999999999999999876 PP

>> Bys1  Blastomyces yeast-phase-specific protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.1   0.00011      0.38       5      38 ..     163     196 ..     159     207 .. 0.83

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00011
        Bys1   5 akradlgsafvlvycnfsvaldveagevstrkil 38 
                  k adlgsa+v++++ f  al v a  v+ r  +
  KOO25020.1 163 HKVADLGSALVMLFALFQFALFVSAIVVTKRSRV 196
                 588*********************9988887543 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (213 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       698  (0.0389313); expected 358.6 (0.02)
Passed bias filter:                      324  (0.0180713); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.44u 0.26s 00:00:00.70 Elapsed: 00:00:00.43
# Mc/sec: 1493.22
//
Query:       KOO25021.1  [L=181]
Description: signal transduction histidine kinase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.3e-07   31.8   0.0    2.9e-07   30.7   0.0    1.6  2  PAS_9     PAS domain
    3.8e-05   23.7   0.0    6.1e-05   23.0   0.0    1.3  1  PAS       PAS fold
     0.0014   18.9   0.0     0.0023   18.2   0.0    1.4  1  PAS_3     PAS fold
  ------ inclusion threshold ------
      0.017   15.4   0.0      0.026   14.8   0.0    1.3  1  PAS_4     PAS fold
      0.034   14.2   0.0      0.083   12.9   0.0    1.7  2  PAS_8     PAS domain
       0.13   12.2   0.0       0.19   11.6   0.0    1.2  1  MEKHLA    MEKHLA domain


Domain annotation for each model (and alignments):
>> PAS_9  PAS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.0       3.2   9.7e+03      42      59 ..      17      34 ..       8      49 .. 0.60
   2 !   30.7   0.0   9.6e-11   2.9e-07      10      80 ..     111     180 ..     103     181 .] 0.84

  Alignments for each domain:
  == domain 1  score: -3.1 bits;  conditional E-value: 3.2
       PAS_9 42 tdpeanerlraaleqgrk 59
                +d+++++ l+aa+ + r+
  KOO25021.1 17 SDDKGKSALAAAISAVRS 34
                456666666777666665 PP

  == domain 2  score: 30.7 bits;  conditional E-value: 9.6e-11
       PAS_9  10 dgrilyaNeaalrllGyspeevlgksitdlfvtdpeanerlraaleqgrk.kerevevvlirkngetfwvll 80 
                  g++ +aN++ l++lGy++ee +g++i  ++  ++e++  l+ +   g+  + ++v+v +++k g+ ++ l+
  KOO25021.1 111 TGHVMWANQTELDVLGYTAEEYIGQPIMKFC--PDEEELVLEIFKTLGSGnIIKDVPVRFRTKGGKIVPLLI 180
                 57899**************************..555555555555555558****************99876 PP

>> PAS  PAS fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.0   0.0     2e-08   6.1e-05       8      88 ..      99     177 ..      94     181 .] 0.86

  Alignments for each domain:
  == domain 1  score: 23.0 bits;  conditional E-value: 2e-08
                 HHSSSEEEEEETTSBEEEECHHHHHHHSSTHHHCTTSBGGGGBSTTHHHHHHHHHHHHHHHTT-ECCCCEEEECTTSSEEE CS
         PAS   8 eslpdpifvvDedgrilyvNaaaeellGlsreevlgkslldliheeddaelaelleqlleqgeesrageisfklrdgrpih 88 
                 ++++ ++  +   g ++++N++  + lG+++ee +g++++ + + e+  el+ ++ + l +g+  +++ ++f+++ g++++
  KOO25021.1  99 QNARIAMHWLSGTGHVMWANQTELDVLGYTAEEYIGQPIMKFCPDEE--ELVLEIFKTLGSGNIIKDVPVRFRTKGGKIVP 177
                 6777777778899******************************8765..59999999999999999999999996666665 PP

>> PAS_3  PAS fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.2   0.0   7.8e-07    0.0023       3      67 ..     116     177 ..     113     180 .. 0.83

  Alignments for each domain:
  == domain 1  score: 18.2 bits;  conditional E-value: 7.8e-07
       PAS_3   3 yvserveeilGyspeellgkveswldlvhpeDrervrealqealkkgepyegeyRirrkdGeyrw 67 
                  ++++  ++lGy++ee +g+   +++++ p++ e v e ++++ +++   ++ +R+r+k G+++ 
  KOO25021.1 116 WANQTELDVLGYTAEEYIGQ--PIMKFC-PDEEELVLEIFKTLGSGNIIKDVPVRFRTKGGKIVP 177
                 56777789************..888887.7777*******9776555555999*********986 PP

>> PAS_4  PAS fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.8   0.0   8.7e-06     0.026       9      46 ..     106     143 ..      98     154 .. 0.85

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 8.7e-06
       PAS_4   9 avldpdgrvlyaNaaaaelfgappeellGktlaellpe 46 
                 + l+  g+v++aN++  +++g+++ee++G++   + p+
  KOO25021.1 106 HWLSGTGHVMWANQTELDVLGYTAEEYIGQPIMKFCPD 143
                 556789************************98877776 PP

>> PAS_8  PAS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.0       1.1   3.4e+03      33      45 ..      75      89 ..      73     110 .. 0.62
   2 ?   12.9   0.0   2.8e-05     0.083      20      54 ..     112     146 ..      85     159 .. 0.79

  Alignments for each domain:
  == domain 1  score: -1.8 bits;  conditional E-value: 1.1
       PAS_8 33 llGys..adlkgell 45
                l+G +  +dl+++  
  KOO25021.1 75 LFGDPcsDDLLEQRK 89
                788555566666544 PP

  == domain 2  score: 12.9 bits;  conditional E-value: 2.8e-05
       PAS_8  20 gdrivdvNqaalellGys.adlkgellgqllpvlrp 54 
                 g +++++Nq+ l+ lGy+ ++ +g+++ ++ p+ ++
  KOO25021.1 112 G-HVMWANQTELDVLGYTaEEYIGQPIMKFCPDEEE 146
                 3.5***************999999988766666554 PP

>> MEKHLA  MEKHLA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   6.4e-05      0.19      18     111 ..      83     172 ..      76     176 .. 0.69

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 6.4e-05
      MEKHLA  18 eLlessesaeelakaLfeapfavlshslkadpvfnyaNqaaldllettweeltdlpsrksaepeekeeRealLekvaeqgfvenysGvrisstG 111
                 +Lle++++++el   +f ++  +  h l+ +   ++aNq+ ld+l +t ee +  p  k    +e+e    ++ k+  +g + +   vr  ++G
  KOO25021.1  83 DLLEQRKKDAEL-IDFF-QNARIAMHWLSGTGHVMWANQTELDVLGYTAEEYIGQPIMKFCP-DEEEL-VLEIFKTLGSGNIIKDVPVRFRTKG 172
                 566664443333.3344.4456777999999999************************9999.44444.4444455555555555666666666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (181 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       328  (0.0182944); expected 358.6 (0.02)
Passed bias filter:                      321  (0.017904); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.42u 0.22s 00:00:00.64 Elapsed: 00:00:00.40
# Mc/sec: 1355.87
//
Query:       KOO25022.1  [L=161]
Description: hypothetical protein Ctob_011992 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    3.6e-14   51.2   7.0    6.7e-07   28.4   0.1    2.6  3  EF-hand_1     EF hand
    1.4e-13   51.1   1.1    2.4e-13   50.3   1.1    1.4  1  EF-hand_7     EF-hand domain pair
    1.1e-12   46.8   1.9    2.2e-06   27.1   0.3    2.6  2  EF-hand_6     EF-hand domain
    1.8e-11   43.0   0.9    2.8e-05   23.4   0.0    2.5  2  EF-hand_5     EF hand
    1.2e-09   37.8   0.4    1.2e-09   37.8   0.4    2.1  3  EF-hand_8     EF-hand domain pair
    9.4e-05   22.7   0.2    0.00016   22.0   0.1    1.4  2  SPARC_Ca_bdg  Secreted protein acidic and rich in cysteine Ca
  ------ inclusion threshold ------
      0.012   15.5   0.2      0.026   14.4   0.2    1.6  1  EF-hand_10    EF hand
      0.012   16.4   0.0      0.064   14.1   0.0    1.9  2  EF-hand_11    EF-hand domain
      0.032   14.2   0.5        1.4    8.9   0.1    2.2  2  EF-hand_4     Cytoskeletal-regulatory complex EF hand
      0.054   13.7   0.0        1.6    9.0   0.0    2.9  3  PMBR          Pseudomurein-binding repeat


Domain annotation for each model (and alignments):
>> EF-hand_1  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.8   0.3   1.3e-09   2.3e-06       1      27 [.      29      55 ..      29      57 .. 0.94
   2 !   28.4   0.1   3.7e-10   6.7e-07       2      26 ..      66      90 ..      65      92 .. 0.88
   3 ?   -3.0   0.1       4.2   7.5e+03      22      28 ..     140     146 ..     140     147 .. 0.65

  Alignments for each domain:
  == domain 1  score: 26.8 bits;  conditional E-value: 1.3e-09
                HHHHHHHHHTTTSSSEEEHHHHHHHHH CS
   EF-hand_1  1 elkeiFrefDkDgdGkIdfeEfkellk 27
                +++++F  +D D++G+Id eE+k+++k
  KOO25022.1 29 DIRKAFIYYDLDNSGTIDAEELKRAIK 55
                689*********************987 PP

  == domain 2  score: 28.4 bits;  conditional E-value: 3.7e-10
                HHHHHHHHTTTSSSEEEHHHHHHHH CS
   EF-hand_1  2 lkeiFrefDkDgdGkIdfeEfkell 26
                l+ ++++ DkDgdG+I+++Ef++ l
  KOO25022.1 66 LQGMIEKCDKDGDGQISYDEFVDSL 90
                5679*****************9866 PP

  == domain 3  score: -3.0 bits;  conditional E-value: 4.2
                 HHHHHHH CS
   EF-hand_1  22 fkellkk 28 
                 fk++++k
  KOO25022.1 140 FKDFMEK 146
                 6777776 PP

>> EF-hand_7  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.3   1.1   1.3e-16   2.4e-13       1      67 [.      27      87 ..      27      91 .. 0.95

  Alignments for each domain:
  == domain 1  score: 50.3 bits;  conditional E-value: 1.3e-16
   EF-hand_7  1 eeklkeaFkelDtdgdgyldkeellrllrkifqgagegsklsdeelellfkefDtdkdGvisfdEFl 67
                +++++ aF  +D d++g +d eel+r+++        + +l++e+l+ ++++ D+d+dG+is+dEF+
  KOO25022.1 27 FTDIRKAFIYYDLDNSGTIDAEELKRAIK------FFNIPLDEEALQGMIEKCDKDGDGQISYDEFV 87
                6799************************9......889****************************8 PP

>> EF-hand_6  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.1   0.3   1.2e-09   2.2e-06       1      27 [.      29      55 ..      29      58 .. 0.94
   2 !   18.4   0.1   7.8e-07    0.0014       8      27 ..      72      91 ..      69     102 .. 0.86

  Alignments for each domain:
  == domain 1  score: 27.1 bits;  conditional E-value: 1.2e-09
   EF-hand_6  1 elreaFklfDkdgdGkidaeElrkalr 27
                ++r+aF ++D d++G+idaeEl++a++
  KOO25022.1 29 DIRKAFIYYDLDNSGTIDAEELKRAIK 55
                589*********************998 PP

  == domain 2  score: 18.4 bits;  conditional E-value: 7.8e-07
   EF-hand_6  8 lfDkdgdGkidaeElrkalr 27
                + DkdgdG+i+++E+++ l+
  KOO25022.1 72 KCDKDGDGQISYDEFVDSLS 91
                68*************99887 PP

>> EF-hand_5  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.4   0.0   1.6e-08   2.8e-05       1      23 [.      30      52 ..      30      55 .. 0.91
   2 !   17.9   0.2   8.5e-07    0.0015       7      21 ..      72      86 ..      66      91 .. 0.85

  Alignments for each domain:
  == domain 1  score: 23.4 bits;  conditional E-value: 1.6e-08
                HHHHHHHH-SS-SSCE-HHHHHH CS
   EF-hand_5  1 lkdtFqaiDlNgDGkIskeELkt 23
                ++++F   Dl+++G+I++eELk+
  KOO25022.1 30 IRKAFIYYDLDNSGTIDAEELKR 52
                6788*****************98 PP

  == domain 2  score: 17.9 bits;  conditional E-value: 8.5e-07
                HH-SS-SSCE-HHHH CS
   EF-hand_5  7 aiDlNgDGkIskeEL 21
                + D++gDG+Is +E+
  KOO25022.1 72 KCDKDGDGQISYDEF 86
                55************9 PP

>> EF-hand_8  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.8   0.4   6.8e-13   1.2e-09       2      52 ..      42      90 ..      38      92 .. 0.95
   2 ?   -2.6   0.0       2.8     5e+03      13      27 ..      96     109 ..      95     116 .. 0.63
   3 ?   -3.7   0.2       6.3   1.1e+04      45      52 ..     140     147 ..     140     150 .. 0.57

  Alignments for each domain:
  == domain 1  score: 37.8 bits;  conditional E-value: 6.8e-13
   EF-hand_8  2 kgkItreelrrilrilglkkglseeevdilfrefDtdgdGkisfeEFcvll 52
                +g I+ eel+r+++ + ++  l ee+++ ++ + D dgdG is++EF++ l
  KOO25022.1 42 SGTIDAEELKRAIKFFNIP--LDEEALQGMIEKCDKDGDGQISYDEFVDSL 90
                699****************..**************************9865 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 2.8
   EF-hand_8  13 ilrilglkkglseee 27 
                 +++++g++ g+ ++e
  KOO25022.1  96 AMAAMGKR-GMQAQE 109
                 56555666.466665 PP

  == domain 3  score: -3.7 bits;  conditional E-value: 6.3
   EF-hand_8  45 feEFcvll 52 
                 f++F++ +
  KOO25022.1 140 FKDFMEKM 147
                 55666544 PP

>> SPARC_Ca_bdg  Secreted protein acidic and rich in cysteine Ca binding region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.0   0.1   8.9e-08   0.00016      32     111 ..       7      87 ..       1      89 [. 0.77
   2 ?   -3.6   0.0       7.9   1.4e+04      14      22 ..     138     146 ..     130     151 .. 0.58

  Alignments for each domain:
  == domain 1  score: 22.0 bits;  conditional E-value: 8.9e-08
  SPARC_Ca_bdg  32 eekehleelekkeeeknlkeckepvawkFsklDtnsdkvlsksELap.lra.plvklehCikpflescDadkdkkislkEwc 111
                   ++k ++ ++ +k+ e  l++  + ++  F   D ++ ++++ +EL+  ++  ++   e+  + ++e+cD d d++is  E++
    KOO25022.1   7 RKK-EKGAELQKAAELALNAKFTDIRKAFIYYDLDNSGTIDAEELKRaIKFfNIPLDEEALQGMIEKCDKDGDGQISYDEFV 87 
                   333.445566677777778888889999*****************862554234456899********************97 PP

  == domain 2  score: -3.6 bits;  conditional E-value: 7.9
  SPARC_Ca_bdg  14 eRlrdWlkn 22 
                   +R++d +++
    KOO25022.1 138 QRFKDFMEK 146
                   455555544 PP

>> EF-hand_10  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.4   0.2   1.5e-05     0.026       5      44 ..      48      87 ..      44      90 .. 0.92

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 1.5e-05
  EF-hand_10  5 kEvkrlLreiNievddeYAekLFkkcDkSksgrLegeEie 44
                +E+kr ++  Ni +d+e  + +  kcDk  +g++   E++
  KOO25022.1 48 EELKRAIKFFNIPLDEEALQGMIEKCDKDGDGQISYDEFV 87
                8*******************************99988875 PP

>> EF-hand_11  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   0.0   3.6e-05     0.064      14      93 ..      22     101 ..       7     113 .. 0.81
   2 ?   -0.0   0.0      0.93   1.7e+03      24      86 ..     138     151 ..     121     158 .. 0.66

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 3.6e-05
                 HHHHSHHHHHHHHHHH-TT-SSEE-HHHHHHHHHHHT----HHHHHHHHHTS-B-TTS-EEHHHHHHHHCS-.------- CS
  EF-hand_11  14 avashyhaivqefenfdtlksntvsreefraictrrvqiltdeqfdrlwselpvnakgrlkyqdflsklsiervaatpma 93 
                 a+ +++  i + f  +d  +s t+  ee++   +     l +e ++ + ++   +  g++ y++f+  ls + va + m 
  KOO25022.1  22 ALNAKFTDIRKAFIYYDLDNSGTIDAEELKRAIKFFNIPLDEEALQGMIEKCDKDGDGQISYDEFVDSLSRDTVAMAAMG 101
                 5678899999******************965554444457888999**************************99888775 PP

  == domain 2  score: -0.0 bits;  conditional E-value: 0.93
                 HHHHHH-TT-SSEE-HHHHHHHHHHHT----HHHHHHHHHTS-B-TTS-EEHHHHHHHHCS-. CS
  EF-hand_11  24 qefenfdtlksntvsreefraictrrvqiltdeqfdrlwselpvnakgrlkyqdflsklsier 86 
                 q                                                 +++df+ k+ +e 
  KOO25022.1 138 Q-------------------------------------------------RFKDFMEKMESEG 151
                 3.................................................5666666666664 PP

>> EF-hand_4  Cytoskeletal-regulatory complex EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.0   0.0     0.027        48      30      69 ..      17      54 ..       4      57 .. 0.69
   2 ?    8.9   0.1    0.0008       1.4      36      66 ..      57      87 ..      51      96 .. 0.89

  Alignments for each domain:
  == domain 1  score: 4.0 bits;  conditional E-value: 0.027
   EF-hand_4 30 kvapvlknskleedklekiwdladidedgkldfeefciam 69
                k+a +  n+k+++  + k +   d+d+ g++d ee+  a+
  KOO25022.1 17 KAAELALNAKFTD--IRKAFIYYDLDNSGTIDAEELKRAI 54
                4555555555554..45566678************87665 PP

  == domain 2  score: 8.9 bits;  conditional E-value: 0.0008
   EF-hand_4 36 knskleedklekiwdladidedgkldfeefc 66
                 n  l+e+ l+ + + +d d dg++ ++ef+
  KOO25022.1 57 FNIPLDEEALQGMIEKCDKDGDGQISYDEFV 87
                5778999***********************8 PP

>> PMBR  Pseudomurein-binding repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.3   0.0       0.5     9e+02       2      15 ..      42      55 ..      41      55 .. 0.87
   2 ?    9.0   0.0   0.00088       1.6       2      16 ..      78      92 ..      77      92 .. 0.92
   3 ?   -0.9   0.0       1.3   2.3e+03      16      24 ..     139     147 ..     138     157 .. 0.85

  Alignments for each domain:
  == domain 1  score: 0.3 bits;  conditional E-value: 0.5
        PMBR  2 sgkisyeeyldmas 15
                sg+i  ee++++++
  KOO25022.1 42 SGTIDAEELKRAIK 55
                89*******99875 PP

  == domain 2  score: 9.0 bits;  conditional E-value: 0.00088
        PMBR  2 sgkisyeeyldmasr 16
                +g isy+e++d +sr
  KOO25022.1 78 DGQISYDEFVDSLSR 92
                799*********998 PP

  == domain 3  score: -0.9 bits;  conditional E-value: 1.3
        PMBR  16 rvlafiesn 24 
                 r ++f+e+ 
  KOO25022.1 139 RFKDFMEKM 147
                 7899**996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (161 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       837  (0.0466841); expected 358.6 (0.02)
Passed bias filter:                      613  (0.0341904); expected 358.6 (0.02)
Passed Vit filter:                        54  (0.00301188); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.44u 0.26s 00:00:00.70 Elapsed: 00:00:00.42
# Mc/sec: 1155.31
//
Query:       KOO25023.1  [L=634]
Description: alpha cardiac-like isoform 2 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.1e-49  169.1   0.0      1e-44  152.8   0.0    3.1  2  Actin     Actin
  ------ inclusion threshold ------
      0.037   14.4   0.0      0.098   13.1   0.0    1.8  1  FtsA      Cell division protein FtsA


Domain annotation for each model (and alignments):
>> Actin  Actin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.8   0.0     3e-05      0.26       2      32 ..      11      41 ..      10      50 .. 0.91
   2 !  152.8   0.0   1.1e-48     1e-44      80     405 ..      52     361 ..      42     363 .. 0.89

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 3e-05
       Actin  2 devsavVlDnGssttraGyagedaPkavips 32
                de +a+++D+G+s+ +aG ag d P + i s
  KOO25023.1 11 DEHEAIIVDVGKSLWKAGPAGGDGPSVAIDS 41
                7899*********************998765 PP

  == domain 2  score: 152.8 bits;  conditional E-value: 1.1e-48
       Actin  80 wehvlkeelkvdpeehpllltepplnppkqrekalEivfEkfkvpalylaksavlsafasgkstglvvDsGasvtsvvpVldGyvLkkairrsdlgGka 178
                 w++ l+eel+  pee+p+ll+e+p +++++re +l+++f +++vpaly++    l+a+as   tg+vvD+G+ +t+v  V+dGy+L  +++ +++gG +
  KOO25023.1  52 WQR-LFEELELSPEETPVLLSEAPGTSRADREATLQLLFGELRVPALYIVAPSLLTAYASDMVTGIVVDIGERSTTVWSVFDGYPLLPGTTVLPMGGGH 149
                 554.5678******************************************************************************************* PP

       Actin 179 Lteqlkellssknvevtprylikkkkvveaessaekeeleklte.syktleeeevleeiKesvcevsedpegdeeksssspeksYeLPDgseikl.gee 275
                  t+ l   l+                                ++ s +  e e v +++Ke +++v  +++     ++ +++ +  LPDgs+++l g +
  KOO25023.1 150 CTDVLLGRLQAL------------------------------GYtSSSPAEAEVVARKAKEGHVQVPAEAK-----KKLKNAAEVALPDGSTVTLsGDD 213
                 *****9999994..............................330445666677789*********77776.....3334455668*****77662667 PP

       Actin 276 RfkvpEiLFdpsligsesaleee.................kskllgiselivaainacdvdlrpeLlanivvtGGnsllpglteRlekelaqlaskgv. 356
                   k+ E+L +   + s+  + ++                   + lg+ + i   +  +d+ +r  Llan+ ++GG sll gl eRle +l++ + +++ 
  KOO25023.1 214 LTKCGEVLLRDIGSLSRAPSASKlrkdtlsgaaletalvtAPEDLGVVQAILGVVALADMSMRGALLANVRLVGGGSLLSGLPERLELDLSKALGPKSp 312
                 789******987777766655559999***********9988999***********************************************9666655 PP

       Actin 357 .kvkiiapeeerkysaWiGGSiLAslgtfqqlwvskqEYeEqGssvverk 405
                  k +++a++  r+y+ W+GG+++ +l+  +   v ++ Ye  G+++v+ +
  KOO25023.1 313 fKPRVHASG-ARRYAPWMGGAVMCNLSACKRAFVLREQYEAAGAEAVHLR 361
                 699******.*************************************987 PP

>> FtsA  Cell division protein FtsA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.0   1.1e-05     0.098       1      83 [.     116     300 ..     116     361 .. 0.74

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 1.1e-05
                 EEEEE-SSSEEEEEEETTEEEE..EEEES--HHHHHHH..........HHHHHT--HHHHHHHHH..HH--S--EEEEEHHHHH............... CS
                 xxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxx..........xxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxx............... RF
        FtsA   1 alvDiGagktdvavaedgalvh..lrvigvggngitkd..........iakalrtaveeAeriki..kyGsalaekeigrkels............... 70 
                 ++vDiG ++t+v  + dg +    ++v+++gg + t+           +    + + +eAe +++  k G++  + e + k+l+               
  KOO25023.1 116 IVVDIGERSTTVWSVFDGYPLLpgTTVLPMGGGHCTDVllgrlqalgyT----SSSPAEAEVVARkaKEGHVQVPAEAK-KKLKnaaevalpdgstvtl 209
                 69*****99999877777754467*************999988754444....45555555555322377777744444.3443455566777777777 PP

                 ..............................................................................GGGGSTTHHHHHH CS
                 ..............................................................................xxxxxxxxxxxxx RF
        FtsA  71 ..............................................................................ggsalpnleelae 83 
                                                                                               ggs l +l e +e
  KOO25023.1 210 sgddltkcgevllrdigslsrapsasklrkdtlsgaaletalvtapedlgvvqailgvvaladmsmrgallanvrlvgGGSLLSGLPERLE 300
                 7777777777777777777788877777788887888888888888888888888888888888888888888888887777777777665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (634 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       611  (0.0340789); expected 358.6 (0.02)
Passed bias filter:                      387  (0.0215851); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.58u 0.26s 00:00:00.84 Elapsed: 00:00:00.43
# Mc/sec: 4468.08
//
Query:       KOO25024.1  [L=472]
Description: hypothetical protein Ctob_011991 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.5e-08   33.1   0.0    5.5e-08   33.1   0.0    2.9  4  DUF2505   Protein of unknown function (DUF2505)
  ------ inclusion threshold ------
        2.8    6.7   4.0        4.5    6.1   4.0    1.2  1  LMBR1     LMBR1-like membrane protein


Domain annotation for each model (and alignments):
>> DUF2505  Protein of unknown function (DUF2505)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.1   0.0   6.1e-12   5.5e-08       9     158 .]      14     167 ..       7     167 .. 0.84
   2 ?   -1.5   0.1      0.27   2.4e+03     134     152 ..     195     213 ..     189     219 .. 0.82
   3 ?   -2.1   0.2      0.41   3.7e+03      59      65 ..     353     359 ..     303     399 .. 0.57
   4 ?   -1.8   0.1      0.34     3e+03      15      27 ..     391     403 ..     364     449 .. 0.60

  Alignments for each domain:
  == domain 1  score: 33.1 bits;  conditional E-value: 6.1e-12
     DUF2505   9 pvdrvyaaltdeeywearleevgaeesevtseeveedgvtvtvtqtlpadalPeavrkvvsgdlk.itrteswgpls.dgratgtvsasvkgapvels. 104
                 ++++ +a+  d  + +  + e ++ ++ ++   v++  v+ t+  t  ++ +P+ +r+ ++ d + ++ + +w++ + d++ + +++ + + +  +++ 
  KOO25024.1  14 SAEEFWALRMDLGFDQFQADERNGGFKLLENVIVDG-RVSRTTVLTFKENPIPPRFRSYLGADEFsFKVRAKWHETKyDEKNRMSYTSEPPVMKDKITv 111
                 566666666666666666666666777777777765.799*********************99777*******99985677799999999999887777 PP

     DUF2505 105 .GtltLepege.gtrlevegevkvkiPlvGgklEklvaenleelldreaefteeWl 158
                  G+  +ep ++ ++r+  ++++ v i  +G+ +E++++++ e++  +  +++e++l
  KOO25024.1 112 sGEQWVEPISDmQCRVVQTATIGVAIFGLGSSVEDSLIKQTEQSSGQLPQVAEKYL 167
                 7*******77779******************************9998888888876 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 0.27
     DUF2505 134 klEklvaenleelldreae 152
                 + E++v  +++++l++e++
  KOO25024.1 195 ASEEVVGAQIKQMLAAEQN 213
                 5588999999999999975 PP

  == domain 3  score: -2.1 bits;  conditional E-value: 0.41
     DUF2505  59 alPeavr 65 
                 al +a++
  KOO25024.1 353 ALQAAAQ 359
                 3333333 PP

  == domain 4  score: -1.8 bits;  conditional E-value: 0.34
     DUF2505  15 aaltdeeywearl 27 
                 +a+   +  ++ +
  KOO25024.1 391 QAIDASAAADEVV 403
                 3333333333333 PP

>> LMBR1  LMBR1-like membrane protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.1   4.0    0.0005       4.5     184     337 ..     288     432 ..     285     444 .. 0.76

  Alignments for each domain:
  == domain 1  score: 6.1 bits;  conditional E-value: 0.0005
       LMBR1 184 velPrslwreiksdldeelkklyfeaaklntekeeaereledllkevkklrksisesdplrkyleeilkkvPeeiaeklksnenkteeslaklekqlik 282
                 +e+Pr ++r  +++ ++   + ++e+ +     e a+  l+ +lk++ +++++   ++      ++i +++ e ++  +++   + + +l   + + ik
  KOO25024.1 288 AEVPRCVAR--RAEAKQAVAASKMELTRALAAAETAKLSLD-ILKKLHRTEEKAAAES-----TSTIRQSTTEALQAAAQK-AASCLLALPLARDSFIK 377
                 799******..*****99****9**9999999999888888.8888888877776555.....566666665655555444.33334444444455999 PP

       LMBR1 283 alqkrertekqwkrllekalelediiknksskekefkssessrrgefakqgklkl 337
                 a +++e   +++ ++++  ++  +++ ++ss+e e+     ++++e+ +q++++l
  KOO25024.1 378 AQAEEEAAVARLAQAIDASAAADEVVAASSSAEDELFARILREKAEAERQVSTSL 432
                 9*******************************99999887788888877763333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (472 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1338  (0.0746277); expected 358.6 (0.02)
Passed bias filter:                      450  (0.025099); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.57u 0.29s 00:00:00.85 Elapsed: 00:00:00.44
# Mc/sec: 3188.25
//
Query:       KOO25025.1  [L=356]
Description: serine threonine protein kinase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    8.6e-13   48.3   0.0    2.8e-12   46.6   0.0    1.8  1  Pkinase      Protein kinase domain
     0.0012   18.2   0.0     0.0035   16.7   0.0    1.7  2  Pkinase_Tyr  Protein tyrosine kinase


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.6   0.0   3.1e-16   2.8e-12     157     264 .]      14     149 ..       6     149 .. 0.81

  Alignments for each domain:
  == domain 1  score: 46.6 bits;  conditional E-value: 3.1e-16
                 TTSCGGGS-HHHHTTSCBSHHHHHHHHHHHHHHHHHSS-STTTSSHHHHHHHHHHT..HHHHHHHCTSHH...HHHTTS.................... CS
     Pkinase 157 fvgtseYlAPEvlkeneyskkvDvWslGvilyelltgkppfsgekgkekvekeldq..lekilkilgetkeklpeasei.................... 233
                 +v t  Y+APEv+ + +++ ++D+Ws Gv+l+el++g+ ++++ ++    + el     +   +++g  k + +    +                    
  KOO25025.1  14 EVQTLAYRAPEVVYGVPFGCAIDLWSFGVTLAELYSGRALLHAASRGG-LAVELAGmlGQPPPRLFGAGKYAPQ----Llplvahtaepltlmlrrqrl 107
                 5789**************************************555544.4444444223344455553333333....13444778899999******* PP

                 ...........-HHHHHHHHHHT-SSGCCSTTHHHHHTSGGG CS
     Pkinase 234 ...........seeakdllkkllkkdpkkRltaeellqhpyl 264
                             +++ dll +ll++dp +Rl a+e+l hp+l
  KOO25025.1 108 savlsaptdapAQQLVDLLARLLTYDPAERLDAREALCHPFL 149
                 ****************************************97 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.0   3.9e-07    0.0035     168     202 ..      17      50 ..       4      60 .. 0.87
   2 ?   -3.6   0.0      0.61   5.4e+03     224     251 ..     111     139 ..     100     143 .. 0.74

  Alignments for each domain:
  == domain 1  score: 16.7 bits;  conditional E-value: 3.9e-07
                  GGGGS-HHHHHHSEEEHHHHHHHHHHHHHHHHTTS CS
  Pkinase_Tyr 168 pvkWmapEslkekkftsksDvWsfGvllwEiftlg 202
                   + + apE++    f  + D WsfGv+l E+++ g
   KOO25025.1  17 TLAYRAPEVVYGVPFGCAIDLWSFGVTLAELYS-G 50 
                  67899**************************98.4 PP

  == domain 2  score: -3.6 bits;  conditional E-value: 0.61
                  S-BBTTSB.HHHHHHHHHHT-SSGGGS-- CS
  Pkinase_Tyr 224 lekpekcp.eelyelmkkcweedpeeRpt 251
                  l++p+++p ++l +l+ + +++dp+eR +
   KOO25025.1 111 LSAPTDAPaQQLVDLLARLLTYDPAERLD 139
                  55666665257999999999999999976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (356 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       987  (0.0550505); expected 358.6 (0.02)
Passed bias filter:                      517  (0.028836); expected 358.6 (0.02)
Passed Vit filter:                        51  (0.00284455); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.51u 0.25s 00:00:00.76 Elapsed: 00:00:00.42
# Mc/sec: 2566.51
//
Query:       KOO25026.1  [L=78]
Description: leucine-rich repeat-containing protein 1 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.3e-12   47.7   0.6    3.1e-07   30.6   0.1    2.1  2  LRR_4     Leucine Rich repeats (2 copies)
    5.5e-12   45.3   1.5    6.9e-07   28.9   0.2    1.7  2  LRR_8     Leucine rich repeat
     0.0062   16.9   0.0       0.63   10.8   0.1    2.9  3  LRR_1     Leucine Rich Repeat
  ------ inclusion threshold ------
      0.019   14.4   0.1      0.021   14.3   0.1    1.0  1  LRR_9     Leucine-rich repeat


Domain annotation for each model (and alignments):
>> LRR_4  Leucine Rich repeats (2 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.0   0.0   7.1e-08   0.00032       2      38 ..       4      40 ..       3      42 .. 0.83
   2 !   30.6   0.1   6.9e-11   3.1e-07       1      40 [.      26      65 ..      26      68 .. 0.90

  Alignments for each domain:
  == domain 1  score: 21.0 bits;  conditional E-value: 7.1e-08
                S--EEE--SS---E-S-.HHH-TT--EEE-.-S----- CS
       LRR_4  2 nLevLdLsnNqltdipl.leklpnLkeLdLsgNnlitd 38
                 L+ Ld s+N+lt +   ++ ++ L+eL L +N  i+ 
  KOO25026.1  4 GLTMLDASDNKLTALTDaIGECTELEELILYRN-GIKA 40
                69************9995555*******99778.6654 PP

  == domain 2  score: 30.6 bits;  conditional E-value: 6.9e-11
                SS--EEE--SS---E-S-HH.H-TT--EEE-.-S-----GG CS
       LRR_4  1 pnLevLdLsnNqltdiplle.klpnLkeLdLsgNnlitdld 40
                + Le+L L  N ++ +p    kl++L++L++ +Nn++ +l+
  KOO25026.1 26 TELEELILYRNGIKALPAAVgKLKKLRVLNV-FNNQLIKLP 65
                68****************5526*********.**9**9985 PP

>> LRR_8  Leucine rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.9   0.2   1.6e-10   6.9e-07       2      61 .]       4      61 ..       3      61 .. 0.96
   2 !   21.1   0.1   4.3e-08   0.00019       2      50 ..      27      74 ..      26      77 .. 0.76

  Alignments for each domain:
  == domain 1  score: 28.9 bits;  conditional E-value: 1.6e-10
                T-SEEE-TTS--SEE-TTSSTT-TT--EEE--SS---GGGGGGGTT--S-.EEE--SS-- CS
       LRR_8  2 nLtsLdLsnNrltslddeaFkglsnLkvLdLsnNllttlspgafsgLpsLrsLdLsgNrL 61
                +Lt Ld s+N+lt+l d   + ++ L++L L +N ++ l p a   L++Lr L++ +N+L
  KOO25026.1  4 GLTMLDASDNKLTALTDAIGE-CTELEELILYRNGIKAL-PAAVGKLKKLRVLNVFNNQL 61
                7999************99999.*****************.9*****************98 PP

  == domain 2  score: 21.1 bits;  conditional E-value: 4.3e-08
                T-SEEE-TTS--SEE-TTSSTT-TT--EEE--SS---GGGGGGGTT--S CS
       LRR_8  2 nLtsLdLsnNrltslddeaFkglsnLkvLdLsnNllttlspgafsgLps 50
                +L++L+L +N +++l+  + k l++L+vL+  nN+l  l p+  ++++s
  KOO25026.1 27 ELEELILYRNGIKALPAAVGK-LKKLRVLNVFNNQLIKLPPERYASCRS 74
                688888888888888888888.888888888888888888876666555 PP

>> LRR_1  Leucine Rich Repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.1   0.0      0.22   9.9e+02       2      15 ..       5      18 ..       4      25 .. 0.77
   2 ?    1.6   0.0      0.15   6.7e+02       2      13 ..      28      39 ..      27      48 .. 0.74
   3 !   10.8   0.1   0.00014      0.63       1      18 [.      50      67 ..      50      72 .. 0.92

  Alignments for each domain:
  == domain 1  score: 1.1 bits;  conditional E-value: 0.22
       LRR_1  2 LrhLdLsnnpllgl 15
                L+ Ld s+n l+ l
  KOO25026.1  5 LTMLDASDNKLTAL 18
                67799999999644 PP

  == domain 2  score: 1.6 bits;  conditional E-value: 0.15
       LRR_1  2 LrhLdLsnnpll 13
                L++L L +n + 
  KOO25026.1 28 LEELILYRNGIK 39
                999*9*999883 PP

  == domain 3  score: 10.8 bits;  conditional E-value: 0.00014
       LRR_1  1 nLrhLdLsnnpllglppn 18
                +Lr+L++ nn+l+ lpp+
  KOO25026.1 50 KLRVLNVFNNQLIKLPPE 67
                7***********999985 PP

>> LRR_9  Leucine-rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   0.1   4.7e-06     0.021      64     128 ..       3      64 ..       1      74 [. 0.87

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 4.7e-06
       LRR_9  64 krlktlllnnnrivriaegleevlPnleelvltnnelqeladldPlaslkklellsllknpvtnk 128
                   l +l  ++n+++ +++ ++e+  +leel+l  n ++ l     + +lkkl++l +++n +++ 
  KOO25026.1   3 SGLTMLDASDNKLTALTDAIGEC-TELEELILYRNGIKALPA--AVGKLKKLRVLNVFNNQLIKL 64 
                 5677888999**********997.58**************98..899*************99875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (78 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       312  (0.017402); expected 358.6 (0.02)
Passed bias filter:                      286  (0.0159518); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.36u 0.26s 00:00:00.62 Elapsed: 00:00:00.41
# Mc/sec: 574.71
//
Query:       KOO25027.1  [L=212]
Description: DNA replication complex gins protein sld5 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    3.5e-07   30.3   0.0    7.6e-07   29.2   0.0    1.6  1  SLD5_C        DNA replication complex GINS protein SLD5 C-ter
  ------ inclusion threshold ------
      0.019   13.7   0.2        2.3    6.9   0.0    2.0  2  Gryzun        Gryzun, putative trafficking through Golgi
      0.025   14.6   3.0       0.26   11.3   1.3    2.2  2  P4Ha_N        Prolyl 4-Hydroxylase alpha-subunit, N-terminal 
      0.052   13.4   2.6       0.13   12.1   2.6    1.7  1  PKcGMP_CC     Coiled-coil N-terminus of cGMP-dependent protei
      0.089   12.5   0.5       0.15   11.8   0.5    1.4  1  TEX13         Testis-expressed sequence 13 protein family
      0.093   11.8   0.8       0.13   11.4   0.8    1.1  1  BAR_2         Bin/amphiphysin/Rvs domain for vesicular traffi
       0.11   13.0   2.5       0.32   11.5   2.5    1.8  1  Sld5          GINS complex protein
       0.11   12.5   0.8       0.16   12.0   0.8    1.2  1  Y2_Tnp        Putative transposase
       0.59   10.5   5.8       0.63   10.4   0.3    2.7  3  Zein-binding  Zein-binding


Domain annotation for each model (and alignments):
>> SLD5_C  DNA replication complex GINS protein SLD5 C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.2   0.0   3.8e-10   7.6e-07       1      55 [.     159     211 ..     159     212 .] 0.96

  Alignments for each domain:
  == domain 1  score: 29.2 bits;  conditional E-value: 3.8e-10
      SLD5_C   1 PdldkfVFvrvgkdvgtvtieelgedgdvelekGdiyvvRYsvvkdlvesGkveL 55 
                 P+ +++VF+ + + ++ + +         +l +G++ +++Y + ++l+ +G+v+L
  KOO25027.1 159 PNIQTHVFCVATRACDPIVLSSGRVV--DQLARGEVAMLPYAPLRPLLANGDVQL 211
                 9**************99999999999..69************************9 PP

>> Gryzun  Gryzun, putative trafficking through Golgi
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.3   0.0    0.0036       7.1     269     322 ..      46     100 ..      14     105 .. 0.85
   2 ?    6.9   0.0    0.0012       2.3     139     197 ..     108     165 ..     101     171 .. 0.88

  Alignments for each domain:
  == domain 1  score: 5.3 bits;  conditional E-value: 0.0036
      Gryzun 269 klessastelsivltetedpleyelei.kasYhlvsdletpiiktlsvklslvnp 322
                  +e+++++  +++ ++ ++ l yele  +++Y l s l+  i+k+ ++ l l++p
  KOO25027.1  46 MVEEQEKRISELRADQSQSRLIYELEKeRVMYRLSSYLKARICKIKRLALYLASP 100
                 56788888899999***********86379*******************999988 PP

  == domain 2  score: 6.9 bits;  conditional E-value: 0.0012
      Gryzun 139 tlsveeekFdLeytisekeekeavwWaeskkgakkrrvrkdsdtaikilPkPPkleikl 197
                  ++ +e++F+ +y+   ke+ + + W +++++a + rv+  +++  ++l+kPP+++ ++
  KOO25027.1 108 HMTDKEQTFHNKYVELYKEHVMLEAWGHASAQALPPRVKDIASA-AELLAKPPNIQTHV 165
                 56678899*******************99999999999999999.9*********9765 PP

>> P4Ha_N  Prolyl 4-Hydroxylase alpha-subunit, N-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   1.3   0.00013      0.26       7      39 ..      31      63 ..      29      75 .. 0.84
   2 ?    3.4   0.1     0.037        73      11      57 ..      70     118 ..      62     127 .. 0.76

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00013
      P4Ha_N  7 kLlklErelveeLesyieeeekkleklkrflee 39
                +Ll  E el+++L++ +ee+ek++++l+   ++
  KOO25027.1 31 ELLPHEAELIKRLQDMVEEQEKRISELRADQSQ 63
                58899**********************986555 PP

  == domain 2  score: 3.4 bits;  conditional E-value: 0.037
      P4Ha_N  11 lEre.lveeLesyieeeekkleklkrfleeleeehes.akedkeeylsn 57 
                 lE+e ++ +L sy+++   k+++l  +l++ e +  +  ++dke+ ++n
  KOO25027.1  70 LEKErVMYRLSSYLKARICKIKRLALYLASPEGADARsHMTDKEQTFHN 118
                 554426779*****************99998877744367777777766 PP

>> PKcGMP_CC  Coiled-coil N-terminus of cGMP-dependent protein kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   2.6   6.6e-05      0.13       8      29 ..      38      59 ..      32      60 .. 0.92

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 6.6e-05
   PKcGMP_CC  8 ERIRELEkrlaekdeEIqELrs 29
                E I+ L+++++e+++ I ELr+
  KOO25027.1 38 ELIKRLQDMVEEQEKRISELRA 59
                6699****************96 PP

>> TEX13  Testis-expressed sequence 13 protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.5   7.4e-05      0.15      80     128 ..      34      82 ..      22      95 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 7.4e-05
       TEX13  80 elqarrvqkLqdqveehksaaqaLaselkrlreqqemerkeaasqlqla 128
                  ++a+ +++Lqd+vee++   + L ++ ++ r   e e++ ++++l + 
  KOO25027.1  34 PHEAELIKRLQDMVEEQEKRISELRADQSQSRLIYELEKERVMYRLSSY 82 
                 567889***********************999999*********99865 PP

>> BAR_2  Bin/amphiphysin/Rvs domain for vesicular trafficking
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.8   6.4e-05      0.13     177     238 ..      37     116 ..      36     130 .. 0.82

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 6.4e-05
       BAR_2 177 kefnkkLeellnqefkkvhelrkkVeesRlkfdtlrseveek...................ekpeteeedkklleklEDef 238
                 +e+ k+L+++++++ k+++elr++  +sRl +++ ++ v  +                   + pe  +  ++++ ++E  f
  KOO25027.1  37 AELIKRLQDMVEEQEKRISELRADQSQSRLIYELEKERVMYRlssylkarickikrlalylASPEGAD-ARSHMTDKEQTF 116
                 57889******************************999988888888888888888888876666666.666666666665 PP

>> Sld5  GINS complex protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   2.5   0.00016      0.32      48     108 ..      34     113 ..       9     114 .. 0.66

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.00016
                 TTHHHHHHHHHHHHT.....HCHHH..................HHHHHHHHHHHHHHHHTHCHHHHHHHTS-TCCHCCS-HHH CS
        Sld5  48 phflelavkllelard....ldelk..................rllrdllevRlakirkfaenledaagggggellsglseeE 108
                 ph  el ++l ++ ++    ++el+                  + l ++l+ R+ ki+ +a +l++++   g +++s ++  E
  KOO25027.1  34 PHEAELIKRLQDMVEEqekrISELRadqsqsrliyelekervmYRLSSYLKARICKIKRLALYLASPE---GADARSHMTDKE 113
                 455555544444444444442222233333333333333333399***********************...888888888777 PP

>> Y2_Tnp  Putative transposase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.8   7.9e-05      0.16      54     131 ..      37     114 ..      27     132 .. 0.89

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 7.9e-05
      Y2_Tnp  54 gklletlrkavaraklkrgllerdeefssllkkaskkgfvvhakkavekerkvleyLarYisrpaisnkRlvstdeek 131
                 ++l+++l++ v++++++ ++l++d+++s+l +++ k++ + ++++ ++ +  ++++La Y++ p  ++ R  +td+e+
  KOO25027.1  37 AELIKRLQDMVEEQEKRISELRADQSQSRLIYELEKERVMYRLSSYLKARICKIKRLALYLASPEGADARSHMTDKEQ 114
                 67899*********************************************************9999999988777764 PP

>> Zein-binding  Zein-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.3   0.00031      0.63      57      90 ..      26      59 ..      22      61 .. 0.92
   2 ?    2.4   0.2     0.095   1.9e+02      12      25 ..      61      74 ..      58      76 .. 0.85
   3 ?   -1.4   0.1       1.5     3e+03       7      24 ..     109     126 ..     103     140 .. 0.59

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00031
  Zein-binding 57 krmaeekaeydeeelealeelllkrekeikelek 90
                  +r+a e + +++e ++ l++++ ++ek+i+el++
    KOO25027.1 26 ERFAPELLPHEAELIKRLQDMVEEQEKRISELRA 59
                  68999999**********************9975 PP

  == domain 2  score: 2.4 bits;  conditional E-value: 0.095
  Zein-binding 12 kalealykELeeER 25
                  ++ ++l  ELe+ER
    KOO25027.1 61 QSQSRLIYELEKER 74
                  677899*******9 PP

  == domain 3  score: -1.4 bits;  conditional E-value: 1.5
  Zein-binding   7 veeerkalealykELeeE 24 
                   ++ ++++ ++ y EL +E
    KOO25027.1 109 MTDKEQTFHNKYVELYKE 126
                   444445555555555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (212 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1158  (0.0645881); expected 358.6 (0.02)
Passed bias filter:                      771  (0.043003); expected 358.6 (0.02)
Passed Vit filter:                        73  (0.00407162); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.51u 0.27s 00:00:00.78 Elapsed: 00:00:00.43
# Mc/sec: 1471.10
//
Query:       KOO25028.1  [L=496]
Description: hypothetical protein Ctob_002540 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      4e-15   56.2   0.0    7.1e-15   55.3   0.0    1.3  1  Methyltransf_28  Putative S-adenosyl-L-methionine-dependent m
    7.5e-07   29.0   0.0    1.3e-06   28.2   0.0    1.3  1  RVT_2            Reverse transcriptase (RNA-dependent DNA pol


Domain annotation for each model (and alignments):
>> Methyltransf_28  Putative S-adenosyl-L-methionine-dependent methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.3   0.0   7.9e-19   7.1e-15      46     255 ..     180     440 ..     175     445 .. 0.67

  Alignments for each domain:
  == domain 1  score: 55.3 bits;  conditional E-value: 7.9e-19
  Methyltransf_28  46 efyealeyhlvEaSpqlrerQknrLkekakevkk.estvkslgvkveWleelkeip....eetgfilanEffDaLPihqfertedg..wrellv 132
                      +++ +++y+++E+S++l+  Q++rL+++   ++   + v   +   eW+++ +  +    e ++ i   E++D++P+++++ +e+     e + 
       KOO25028.1 180 DLFGSCRYVMLEISERLAGIQRERLRNEG--FEDnVEVVHRCA--FEWAQDRSGGSssvlEGPWHIAMLEVLDNMPHDKVRVRERAdgSLEAVE 269
                      67889*********************965..333233333333..4698876644457889********************6555544333333 PP

  Methyltransf_28 133 eltpe...................kkakekefrltlspsetdplsevlpklskrlka..................................lee 173
                       l  e                   +            p ++ +++evl++l+ +  +                                    +
       KOO25028.1 270 ALVIEeevfdsttksarlqytedfR------------PLQEATVREVLESLGLTSMDalhelqadiaategagagaglalgmhgllsglmsAAA 351
                      3332233455443344444443333............333333333333333332223333333333377778888888888888888866778 PP

  Methyltransf_28 174 gsrieispeaeallediaerlakegGaaLiiDYge.ssse....pngtL..rairkhklv...dpleepGevDltadvDFtalaeaaeeasg 255
                        + +i++ ++ ll  + +  ++  + + i+D+   +  +      +++  ++   h ++   d+l++pGe+D+ +++ F  la+++ +as+
       KOO25028.1 352 PLEAFIPTGSQRLLGALCHACPE--HQFTIADFSWlP-PQpsgaILAPVvqTQRGGHTIDmrgDYLRHPGEADILFPTHFGLLARLVGAASK 440
                      88899******************..*********965.45234444444433334566669999*********************9977765 PP

>> RVT_2  Reverse transcriptase (RNA-dependent DNA polymerase)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.2   0.0   1.5e-10   1.3e-06     146     229 ..      16     111 ..       3     115 .. 0.81

  Alignments for each domain:
  == domain 1  score: 28.2 bits;  conditional E-value: 1.5e-10
       RVT_2 146 eaesGlyvrgtgegk.livalyvddlliagsdi..........kiledvkkelakkfklkdlgkvskfLGieiaq.eaggiklsladyiakvvkkf 229
                 ++   +++r + +g+ + +++yvd+l i+ s +            ++ +   la  +++ d g+++  LGie+     g ikl ++ yi+k+v+ f
  KOO25028.1  16 DSDPCVFTRVHPDGEiITIGVYVDNLQIVHSAVldadgrgpagCAYNSFMDSLAGDWDITDEGPMEDLLGIEVDYlADGAIKLHQTSYIKKLVERF 111
                 5666799********778********99865432222222222589***************************9978899************9976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (496 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       416  (0.0232026); expected 358.6 (0.02)
Passed bias filter:                      398  (0.0221987); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.50u 0.23s 00:00:00.73 Elapsed: 00:00:00.40
# Mc/sec: 3764.78
//
Query:       KOO25029.1  [L=59]
Description: hypothetical protein Ctob_002543 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (59 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       273  (0.0152267); expected 358.6 (0.02)
Passed bias filter:                      245  (0.013665); expected 358.6 (0.02)
Passed Vit filter:                        12  (0.000669307); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.23s 00:00:00.57 Elapsed: 00:00:00.40
# Mc/sec: 446.58
//
Query:       KOO25030.1  [L=1231]
Description: tripartite motif-containing protein 71 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    6.9e-46  155.3   0.0      4e-16   59.7   0.0    6.4  6  Filamin        Filamin/ABP280 repeat
      4e-10   39.9   1.7     0.0062   16.8   0.0    4.8  5  Invasin_D3     Invasin, domain 3
  ------ inclusion threshold ------
      0.016   14.7   0.1       0.38   10.2   0.0    2.5  3  Neurexophilin  Neurexophilin
      0.024   14.9   0.0      0.057   13.7   0.0    1.6  1  SH3_3          Bacterial SH3 domain


Domain annotation for each model (and alignments):
>> Filamin  Filamin/ABP280 repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.7   0.0   8.9e-20     4e-16       2     102 ..      22     117 ..      21     118 .. 0.93
   2 !   12.9   0.0   3.3e-05      0.15      73     102 ..     571     602 ..     528     603 .. 0.92
   3 !   21.4   0.0   7.7e-08   0.00035      34     102 ..     648     707 ..     623     708 .. 0.71
   4 !   15.1   0.0   7.1e-06     0.032       2      92 ..     716     820 ..     715     837 .. 0.64
   5 !   24.7   0.0   6.9e-09   3.1e-05      18     103 .]     897     979 ..     879     979 .. 0.82
   6 !   12.8   0.0   3.6e-05      0.16      20      95 ..    1011    1083 ..    1000    1087 .. 0.80

  Alignments for each domain:
  == domain 1  score: 59.7 bits;  conditional E-value: 8.9e-20
                 CSTTSEEEESGGGTEEETTS-EEEEEEESSSTSCCCSTTS..EEEEE..ESSTS.....EEEEEEEE-SSSEEEEEE--SSSCEEEEEEEETTCE-TTS CS
     Filamin   2 vdpskskvnGpGieasvagesltFtvytkdakgeksevggdelqvrivtgsphgaatkssvkievvdnedgtytvsYtpeepgtyrvsvkldgkhiggs 100
                 ++p  +kv+G  +e ++a e +tFt+++ d+ g++ ++ggd++ v i  g+  g+    +v ++++dn+dg y+v ++p ++g+y +sv+l g++ + s
  KOO25030.1  22 TKPALCKVTGACLEGAIARELATFTIEAYDETGKRQTHGGDNFLVAI-RGRGAGE----KVRAKIIDNQDGQYVVGFKPITSGKYLISVSLLGEPLADS 115
                 67899******************************************.4444455....8999************************************ PP

                 SE CS
     Filamin 101 Pf 102
                 Pf
  KOO25030.1 116 PF 117
                 *9 PP

  == domain 2  score: 12.9 bits;  conditional E-value: 3.3e-05
                 EEEEEE--SSSCEEEEEEEE..TTCE-TTSSE CS
     Filamin  73 tytvsYtpeepgtyrvsvkl..dgkhiggsPf 102
                 +++v+Y ++++gtyr++v l   g + +gsPf
  KOO25030.1 571 VHNVHYSIAMCGTYRLHVALrhEGVQLPGSPF 602
                 579***************9944567999***9 PP

  == domain 3  score: 21.4 bits;  conditional E-value: 7.7e-08
                 SCCCSTTS..EEEEE..ESSTS...........EEEEEEEE-SSSEEEEEE--SSSCEEEEEEEETTCE-TTSSE CS
     Filamin  34 geksevggdelqvrivtgsphgaatks......svkievvdnedgtytvsYtpeepgtyrvsvkldgkhiggsPf 102
                 g+ +e gg     +i           +      +++ +vvdn+dgty   ++ + +g +  +v++dg +i gsP+
  KOO25030.1 648 GNACEAGG----ATI-----------VcsggdkRIESRVVDNNDGTYLLVWRSKVAGVFDAHVSVDGVPILGSPM 707
                 33333322....222...........022233368999************************************6 PP

  == domain 4  score: 15.1 bits;  conditional E-value: 7.1e-06
                 CSTTSEEEESGGGTEEETTS-EEEEEEESSSTSCCCSTTS..EEEEE.........ESSTS.............EEEEEEEE-SSS.EEEEEE--SSSC CS
     Filamin   2 vdpskskvnGpGieasvagesltFtvytkdakgeksevggdelqvriv.......tgsphgaatks........svkievvdnedg.tytvsYtpeepg 84 
                  d ++s + G+G+ ++vag+++ F +++kd  g+  +    +l+ ++        + + +++a+k          v   ++   +g  ++v+Y +  +g
  KOO25030.1 716 PDLKQSELIGSGLTKAVAGKPADFRIKCKDRFGNAAQP-SANLKFEMAmlppvegVDK-KDRAEKTiiadrwksAVAHPIEGTWHGaEFEVKYVADVAG 812
                 578899999********************999995554.3555555545577553222.2222221334433332222344444555789999999999 PP

                 EEEEEEEE CS
     Filamin  85 tyrvsvkl 92 
                 +++++v +
  KOO25030.1 813 DLELHVWC 820
                 99999987 PP

  == domain 5  score: 24.7 bits;  conditional E-value: 6.9e-09
                 ETTS-EEEEEEESSSTSCCCSTTS..EEEEE..ESSTS.....EEEEEEEE-SSSEEEEEE--SSSCEEEEEEEETTCE-TTSSEE CS
     Filamin  18 vagesltFtvytkdakgeksevggdelqvrivtgsphgaatkssvkievvdnedgtytvsYtpeepgtyrvsvkldgkhiggsPfd 103
                  age++++    +d+ g++    +  l v++  ++p+g + +  ++   + ++   y+v+Y p+ +g+y ++v+l+g +i+gsP d
  KOO25030.1 897 LAGEPIVVRPRIRDKLGNNTAAAEGALSVTL--TTPEGTELE-LMPNISIRSGLTNYDVRYEPQLAGRYAMHVRLAGAPIAGSPVD 979
                 6788888888999999999998888888888..999998333.4445566777789****************************75 PP

  == domain 6  score: 12.8 bits;  conditional E-value: 3.6e-05
                  TS-EEEEEEESSSTSCCCSTTS..EEEEE..ESSTS.....EEEEEEEE-SSSEEEEEE--SSSCEEEEEEEETTC CS
     Filamin   20 gesltFtvytkdakgeksevggdelqvrivtgsphgaatkssvkievvdnedgtytvsYtpeepgtyrvsvkldgk 95  
                  ++++++   +kd  g+++ +gg  +  r+  +s  +   ++++  ev+d+edgty++s  ++ +++ +v ++ld+ 
  KOO25030.1 1011 QRKYSILLTVKDRCGNRVDHGGAAVAGRL--QSA-NLPPQQEALLEVEDHEDGTYDISLFLKGACDPKVIISLDKD 1083
                  56777778899999999999998888888..444.3322238999**************99999999999999985 PP

>> Invasin_D3  Invasin, domain 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.2   0.0   8.1e-05      0.36      22      87 ..      43     114 ..      39     120 .. 0.77
   2 ?   -4.4   1.8         4   1.8e+04      25      32 ..     142     149 ..     122     184 .. 0.49
   3 !   16.8   0.0   1.4e-06    0.0062      24      94 ..     639     712 ..     631     714 .. 0.81
   4 ?   -1.4   0.0      0.65   2.9e+03      28      71 ..     908     932 ..     889     949 .. 0.58
   5 !    6.6   0.0    0.0021       9.6      24      66 ..    1016    1066 ..    1010    1076 .. 0.78

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 8.1e-05
  Invasin_D3  22 stltvtlkDangnp..vsglt..vtfsttsag..tlsavtdngdGtytatLtattagtatitptvnGvaiaa 87 
                 +t t+ + D+ g+    +g++  v++  + ag  +  ++ dn+dG y + ++  t+g++ i++++ G+  a+
  KOO25030.1  43 ATFTIEAYDETGKRqtHGGDNflVAIRGRGAGekVRAKIIDNQDGQYVVGFKPITSGKYLISVSLLGEPLAD 114
                 68999********996667884555555555563333455***********************999965554 PP

  == domain 2  score: -4.4 bits;  conditional E-value: 4
  Invasin_D3  25 tvtlkDan 32 
                 t t+  a+
  KOO25030.1 142 TTTIASAK 149
                 22222221 PP

  == domain 3  score: 16.8 bits;  conditional E-value: 1.4e-06
  Invasin_D3  24 ltvtlkDangnp..vsgltvtfsttsagtlsavtdngdGtytatLtattagtatitptvnG.vaiaatatvtlt 94 
                 + +++ D  gn+  ++g+t++ s  ++   s v dn+dGty  +  ++ ag+    ++v+G  + +++  +tlt
  KOO25030.1 639 VVLKASDMMGNAceAGGATIVCSGGDKRIESRVVDNNDGTYLLVWRSKVAGVFDAHVSVDGvPILGSPMPLTLT 712
                 668999******98899999999664557899*****************************4344444446665 PP

  == domain 4  score: -1.4 bits;  conditional E-value: 0.65
  Invasin_D3  28 lkDangnpvsgltvtfsttsagtlsavtdngdGtytatLtatta 71 
                 ++D+ gn                    t  ++G  ++tLt  + 
  KOO25030.1 908 IRDKLGNN-------------------TAAAEGALSVTLTTPEG 932
                 45555555...................33444444444444333 PP

  == domain 5  score: 6.6 bits;  conditional E-value: 0.0021
  Invasin_D3   24 ltvtlkDangnp..vsgltvtfsttsag......tlsavtdngdGtytatL 66  
                  + +t+kD  gn    +g++v+   +sa       +l +v+d++dGty   L
  KOO25030.1 1016 ILLTVKDRCGNRvdHGGAAVAGRLQSANlppqqeALLEVEDHEDGTYDISL 1066
                  679*********76667778877774446665557779*********8665 PP

>> Neurexophilin  Neurexophilin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.0   8.6e-05      0.38      58     108 ..      58     108 ..      43     114 .. 0.81
   2 ?    1.2   0.1     0.047   2.1e+02      77     106 ..     667     696 ..     659     702 .. 0.82
   3 ?   -3.7   0.0       1.5   6.6e+03      81     107 ..    1054    1080 ..    1050    1082 .. 0.84

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 8.6e-05
  Neurexophilin  58 vfgwGDfysniktvkLnllivGkvvDhgnGtfsvffrhnstGqgnvsvsLv 108
                    ++g  +f   i+       +  k++D ++G + v f+  ++G+  +svsL 
     KOO25030.1  58 THGGDNFLVAIRGRGAGEKVRAKIIDNQDGQYVVGFKPITSGKYLISVSLL 108
                    5553345677777777778899***************************96 PP

  == domain 2  score: 1.2 bits;  conditional E-value: 0.047
  Neurexophilin  77 ivGkvvDhgnGtfsvffrhnstGqgnvsvs 106
                    i  +vvD ++Gt+   +r + +G  +  vs
     KOO25030.1 667 IESRVVDNNDGTYLLVWRSKVAGVFDAHVS 696
                    6789*******************8655444 PP

  == domain 3  score: -3.7 bits;  conditional E-value: 1.5
  Neurexophilin   81 vvDhgnGtfsvffrhnstGqgnvsvsL 107 
                     v Dh++Gt+++   ++ +   +v +sL
     KOO25030.1 1054 VEDHEDGTYDISLFLKGACDPKVIISL 1080
                     779******999888888888888887 PP

>> SH3_3  Bacterial SH3 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.0   1.3e-05     0.057       3      32 ..     223     252 ..     221     255 .. 0.91

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 1.3e-05
       SH3_3   3 lnvRsgPstssevigtlpyGekVevleetg 32 
                 l vRsg  ++se++g+l++G+++++le+++
  KOO25030.1 223 LVVRSGLELESEKLGQLYPGQRLTLLECVH 252
                 6799999********************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1231 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       589  (0.0328518); expected 358.6 (0.02)
Passed bias filter:                      373  (0.0208043); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.83u 0.27s 00:00:01.10 Elapsed: 00:00:00.46
# Mc/sec: 8082.98
//
Query:       KOO25031.1  [L=177]
Description: tiggy-winkle hedgehog [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.1e-15   55.9   0.1    4.5e-15   55.7   0.1    1.0  1  Hint      Hint module


Domain annotation for each model (and alignments):
>> Hint  Hint module
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.7   0.1   2.5e-19   4.5e-15      22     157 ..       2     133 ..       1     160 [. 0.88

  Alignments for each domain:
  == domain 1  score: 55.7 bits;  conditional E-value: 2.5e-19
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX..XXX CS
        Hint  22 edgeqkslseLepGdkVlavdesgevvfsevllf.ldrdseqraefveietengekltlTpaHLvfvsenekssseeeeavfaskvregdyvlvedtas 119
                  dg+ ++l+ L+ Gd+++a+ ++g+++ + v    l   + q ++fv+++te+g++ltlT+ H + v  +++++        a++v  g++++     s
  KOO25031.1   2 VDGTPRRLDALRAGDTIVAARADGTLTNDIVSHLsLADADAQGTTFVVLTTESGRNLTLTAMHHLPVGPKCCANL-----KLAQDVVVGETIFE-AVVS 94 
                 588999******************99988775431445557899***********************99998877.....68***********9.999* PP

                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXX CS
        Hint 120 kelrpskvvsvsteektGvyAPlTehGti.vVdgvlaSc 157
                 + +r  +v ++ ++ k G+ +P+  hG + +Vdg+++S 
  KOO25031.1  95 AAVRATQVIKIGSVIKAGLHSPVLTHGAMpIVDGIVTSF 133
                 ***************************9889*****994 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (177 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       287  (0.0160076); expected 358.6 (0.02)
Passed bias filter:                      209  (0.0116571); expected 358.6 (0.02)
Passed Vit filter:                        12  (0.000669307); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.28s 00:00:00.66 Elapsed: 00:00:00.42
# Mc/sec: 1253.14
//
Query:       KOO25032.1  [L=116]
Description: hypothetical protein Ctob_002544 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (116 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       286  (0.0159518); expected 358.6 (0.02)
Passed bias filter:                      162  (0.00903564); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.26s 00:00:00.62 Elapsed: 00:00:00.41
# Mc/sec: 843.68
//
Query:       KOO25033.1  [L=1062]
Description: hypothetical protein Ctob_002547 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    0.00014   22.0   0.1    0.00049   20.3   0.1    2.0  1  Laminin_G_3  Concanavalin A-like lectin/glucanases superfamil


Domain annotation for each model (and alignments):
>> Laminin_G_3  Concanavalin A-like lectin/glucanases superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.3   0.1   2.8e-08   0.00049      87     151 ..     504     566 ..     446     567 .. 0.82

  Alignments for each domain:
  == domain 1  score: 20.3 bits;  conditional E-value: 2.8e-08
  Laminin_G_3  87 vtydggtlrlYvNGvevgsatltggllsatsgplviGrdpgg.ddpfdGlidevriynralsaaeI 151
                  v+y+++ +  + +G +++++    g   a++++++iG++++  +++f+G+i e+ +y r+l+a+e 
   KOO25033.1 504 VVYNASGAFSFADGCLQSQTGSQVG---AAGKSFMIGSRNNEmGRFFNGTISEILVYARPLNATEL 566
                  6777777777888887776633332...46889****999655********************997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1062 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       430  (0.0239835); expected 358.6 (0.02)
Passed bias filter:                      353  (0.0196888); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.70u 0.26s 00:00:00.96 Elapsed: 00:00:00.43
# Mc/sec: 7490.92
//
Query:       KOO25034.1  [L=334]
Description: rhodanese-related sulfurtransferase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    2.9e-15   56.4   0.0    4.4e-15   55.8   0.0    1.3  1  UPF0176_N    UPF0176 acylphosphatase like domain
    7.1e-07   29.7   0.0    1.3e-06   28.9   0.0    1.4  1  Rhodanese    Rhodanese-like domain
    0.00082   19.7   7.8    0.00082   19.7   7.8    1.8  2  Rhodanese_C  Rhodanase C-terminal


Domain annotation for each model (and alignments):
>> UPF0176_N  UPF0176 acylphosphatase like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.8   0.0   7.4e-19   4.4e-15       1      90 [.      16     105 ..      16     107 .. 0.97

  Alignments for each domain:
  == domain 1  score: 55.8 bits;  conditional E-value: 7.4e-19
   UPF0176_N   1 yrvlsfYkFvpledpealaeelrelleelgllGrilvAeEGiNgtlavpeealeaflaalrsdeelsdlelklslsseppFerlkvkvkk 90 
                 yrvl+fY+ +p+++p++   e+r++l ++++ Gr+++ ++G+N++++++++++ea+ a+  +     +l +k++  +ep+F++l+vk k+
  KOO25034.1  16 YRVLAFYAIAPVAAPDDAVAEHRQYLLKHDMVGRVYICADGLNAQVSGTTASCEAYRAFAAAAFPGIQLFFKEDPVAEPAFPKLRVKHKA 105
                 79************************************************************999999*******************996 PP

>> Rhodanese  Rhodanese-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.9   0.0   2.2e-10   1.3e-06       9     104 ..     136     225 ..     124     228 .. 0.87

  Alignments for each domain:
  == domain 1  score: 28.9 bits;  conditional E-value: 2.2e-10
   Rhodanese   9 lekgkvallDvRppeeYekghIpgAvnvskdtlsrakkseapllelpeellelgidnkktvvvycdgggraaaaaallkklGyknvsvldGGfkaw 104
                 ++++++ +lDvR+ +e++ gh +gA      tl ++ + +a    lp++ +++   + ++v  yc gg r +   a lk+ G+++v+ l GG++ +
  KOO25034.1 136 IGAPQPTILDVRNGYEWDVGHFEGAERP---TLDEFAEFDAAAYGLPTDPEAK---KSTPVMMYCTGGIRCEYFSAKLKAEGFEKVYKLQGGVQHY 225
                 4556666******************999...8888888888888888888887...9*************8888999999**999*******9987 PP

>> Rhodanese_C  Rhodanase C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.0      0.72   4.3e+03      14      41 ..      43      68 ..      34      72 .. 0.65
   2 !   19.7   7.8   1.4e-07   0.00082      32      64 .]     240     271 ..     229     271 .. 0.89

  Alignments for each domain:
  == domain 1  score: -1.8 bits;  conditional E-value: 0.72
  Rhodanese_C 14 ksevvgkCieCgkpvdelrkrnCanedC 41
                 k+++vg+ ++C +  +   ++  ++ +C
   KOO25034.1 43 KHDMVGRVYICADGLN--AQVSGTTASC 68
                 5567888888877776..4444444555 PP

  == domain 2  score: 19.7 bits;  conditional E-value: 1.4e-07
  Rhodanese_C  32 rkrnCanedCnelvlvCeeCaeklkgvcseeCk 64 
                  + ++C n dCn+l lvC++C ++ +g+c+e+C+
   KOO25034.1 240 EEVQC-NIDCNRLHLVCPRCLAERRGFCCESCN 271
                  47899.79************************5 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (334 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       521  (0.0290591); expected 358.6 (0.02)
Passed bias filter:                      346  (0.0192983); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.45u 0.26s 00:00:00.71 Elapsed: 00:00:00.43
# Mc/sec: 2336.06
//
Query:       KOO25035.1  [L=606]
Description: protein disulfide isomerase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    4.8e-14   52.2   0.0    1.1e-09   38.2   0.0    2.4  2  Thioredoxin    Thioredoxin
    2.2e-08   34.2   0.0     0.0059   16.5   0.0    3.6  4  Thioredoxin_6  Thioredoxin-like domain
  ------ inclusion threshold ------
       0.01   16.3   0.0        1.8    9.0   0.0    3.0  2  Thioredoxin_2  Thioredoxin-like domain
      0.063   13.9   0.7       0.11   13.2   0.7    1.3  1  YabA           Initiation control protein YabA
       0.11   11.9   0.0       0.19   11.1   0.0    1.3  1  OST3_OST6      OST3 / OST6 family, transporter family
       0.24   11.6   1.9          1    9.6   2.0    2.0  2  HALZ           Homeobox associated leucine zipper
        0.5   10.8   4.5        1.1    9.8   4.5    1.5  1  ZapB           Cell division protein ZapB


Domain annotation for each model (and alignments):
>> Thioredoxin  Thioredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.8   0.0   7.1e-05      0.18       5      99 ..      29     122 ..      25     126 .. 0.79
   2 !   38.2   0.0   4.3e-13   1.1e-09       4     101 ..     448     547 ..     445     549 .. 0.92

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 7.1e-05
                  SSHHHHHHHHTTTSSEEEEEEE-TTSHH.HHCHHHHHHHHHHHCTTTSEEEEEETTTSHHHHHHTT-SSSSEEEEEETTE.EEEEEESS.-HHHHHHH CS
  Thioredoxin   5 ltkenFeeevakekklvlveFyApwCgh.CkalaPeleklaeelkdkvklakvdvdenedlakkyevegiPtlklfkngk.evkkyega.rekeklaa 99 
                  +  +nF + va  ++lvl+    p C+h    l P l ++   l      ++v v e ++la+  +++++P+l+l++ +  +++ + g   ++++la+
   KOO25035.1  29 IDRSNFTSFVAG-STLVLLLHALPECPHePSGLRPLLSSVTGLLP---AAVRVAVSEDAQLAETSGIRSFPALRLYHGDAdAPAVFRGPlTSATALAS 122
                  667888888888.88888888888888834568899999888888...6778889999******************9888688888888444455555 PP

  == domain 2  score: 38.2 bits;  conditional E-value: 4.3e-13
                  ESSHHHHHHHHTTTSSEEEEEEE-TTSHHHHCHHHHHHHHHHHCTT..TSEEEEEETTTSHHHHHHTT-SSSSEEEEEETTE.EEEEEESS-HHHHHH CS
  Thioredoxin   4 vltkenFeeevakekklvlveFyApwCghCkalaPeleklaeelkd..kvklakvdvdenedlakkyevegiPtlklfkngk.evkkyegarekekla 98 
                  ++++++F+e v ++  +vl+  + +wC  C al  e+e++a + +d  +v++a+ d+  n dl++ + ++ +Pt++++++g   + +++  r++ +l 
   KOO25035.1 448 IVVASTFDELVLEATVDVLLLVTTDWCDGCEALDAEFEAVAGRWQDesRVRIARFDAGVN-DLPRTLRIDKLPTILFIRAGAtDAYELSHHRTERELT 544
                  567889****************************************99*********988.9*******************97778888888888887 PP

                  HHH CS
  Thioredoxin  99 afl 101
                  + +
   KOO25035.1 545 DAI 547
                  765 PP

>> Thioredoxin_6  Thioredoxin-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.6   0.0    0.0026       6.6      19     134 ..      71     186 ..      61     199 .. 0.82
   2 !    6.2   0.0    0.0033       8.5      61      91 ..     257     287 ..     245     294 .. 0.83
   3 !   16.5   0.0   2.3e-06    0.0059      94     169 ..     304     381 ..     297     389 .. 0.75
   4 ?   -1.9   0.0       1.1   2.7e+03     111     158 ..     478     524 ..     453     544 .. 0.60

  Alignments for each domain:
  == domain 1  score: 6.6 bits;  conditional E-value: 0.0026
                    -T.TSEEEEE--HHHHHHTT--S.SEEEEEETTTTEEEEEETHT--HHHHHHHHHHH---SEEE-S..HHHHHHHHTSS--EEEEEEE-TTSTTHH CS
  Thioredoxin_6  19 lkgdvrfgvtkskevadklgvke.pavllfrkfdeekvkydgekitvddlkkfieknslplvrelt..penaeelfeeglppllllflkkddeete 111
                    l   vr++v+ ++ +a+  g+++ pa+ l++++ + ++ + g  ++++ l++ ++ +  p   e t  ++++ee+  ++l    +lf + ++   +
     KOO25035.1  71 LPAAVRVAVSEDAQLAETSGIRSfPALRLYHGDADAPAVFRGPLTSATALASHLRREASPALLEATttENIYEEIRASELT--AVLFATPGS-MAR 163
                    55568999***********************************99**************9988776546668888888855..566665555.567 PP

                    HHHHHHHHHHHHTTTT-EEEEEE CS
  Thioredoxin_6 112 klkkaiekvakefkdkinfalad 134
                     + +a+ ++ +++++++ f++a 
     KOO25035.1 164 TVFAALPAADARLRRQVSFVVAS 186
                    78888999999999999999876 PP

  == domain 2  score: 6.2 bits;  conditional E-value: 0.0033
                    T--HHHHHHHHHHH---SEEE-SHHHHHHHH CS
  Thioredoxin_6  61 kitvddlkkfieknslplvreltpenaeelf 91 
                     i  + l++++   +lpl  e+ p+n++++ 
     KOO25035.1 257 AILEQQLASWLGLYRLPLLAEIGPHNFDQYE 287
                    477899***********************85 PP

  == domain 3  score: 16.5 bits;  conditional E-value: 2.3e-06
                    S--EEEEEEE-TTSTT...HHHHHHHHHHHHHHTTTT-EEEEEETTGGHHHHHHTT--GGG-SEEEEEESSS.S-EEEET CS
  Thioredoxin_6  94 glppllllflkkddee...teklkkaiekvakefkdkinfaladaksfkrpleylglsssdlPvivivdsas.hkykypp 169
                    +lp+++l++ + + ee   ++++++ +++va+  +++  f+++da+++++    l l+++ lP+++  +++  h++++pp
     KOO25035.1 304 PLPLFWLFV-NASAEEagrNDDARELVRSVAAGWRGRALFVWLDAERYEQHAASLALNRELLPALA-AEHDGaHYVYAPP 381
                    567555555.44433312257888889***************************************.6655524454444 PP

  == domain 4  score: -1.9 bits;  conditional E-value: 1.1
                    HHHHHHHHHHHHHTTTT-EEEEEETT.GGHHHHHHTT--GGG-SEEEEE CS
  Thioredoxin_6 111 eklkkaiekvakefkdkinfaladak.sfkrpleylglsssdlPviviv 158
                    e l +++e+va + +d+  + +a  +  ++++ + l+++  +lP+i ++
     KOO25035.1 478 EALDAEFEAVAGRWQDESRVRIARFDaGVNDLPRTLRID--KLPTILFI 524
                    555555666666666554444444442233333344444..66665544 PP

>> Thioredoxin_2  Thioredoxin-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.2   0.0     0.045   1.2e+02      67     101 ..      80     115 ..      49     124 .. 0.81
   2 ?    9.0   0.0   0.00071       1.8       8      87 ..     465     524 ..     460     536 .. 0.69

  Alignments for each domain:
  == domain 1  score: 3.2 bits;  conditional E-value: 0.045
  Thioredoxin_2  67 eenvelarkygvrgtPtivfldgk.eivarlpGyvp 101
                     e  +la++ g+r++P++ ++ g+    a+ +G ++
     KOO25035.1  80 SEDAQLAETSGIRSFPALRLYHGDaDAPAVFRGPLT 115
                    567789999************999877778888664 PP

  == domain 2  score: 9.0 bits;  conditional E-value: 0.00071
  Thioredoxin_2   8 vlvvftdpdCpyCkklkkelkel.ddvtvrvllfplkpsfepkavaiwcakekkkafkdieenvelarkygvrgtPtivfl 87 
                    vl+++t+++C  C++l +e++ +  +          ++++   +++++   +             l r+++++ +Pti+f+
     KOO25035.1 465 VLLLVTTDWCDGCEALDAEFEAVaGR---------WQDESRVRIARFDAGVND------------LPRTLRIDKLPTILFI 524
                    899*****************999422.........334444555555444443............5566666666666655 PP

>> YabA  Initiation control protein YabA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.7   4.2e-05      0.11      15      52 ..     562     599 ..     553     606 .] 0.87

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 4.2e-05
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
        YabA  15 eqleelleeleelkeelaelleenaeLeleneklrerl 52 
                 e++++  e l +l++e+ +lleena+L++e   lr+++
  KOO25035.1 562 EEIRQAIEMLPRLQSETRALLEENARLRAELAALRQEQ 599
                 568999999**************************986 PP

>> OST3_OST6  OST3 / OST6 family, transporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   7.2e-05      0.19      45     120 ..     473     535 ..     451     566 .. 0.75

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 7.2e-05
   OST3_OST6  45 kCelCrefepefelvakswrkdekskskklfFakvdfdegkdvFqklglnsaPhlllfppkkgpkeskkkdtydfs 120
                  C+ C+ ++ efe+va  w+ +     +++  a+ d     d+ ++l++ ++P +l++ +  ++        y++s
  KOO25035.1 473 WCDGCEALDAEFEAVAGRWQDE-----SRVRIARFDAG-VNDLPRTLRIDKLPTILFIRAGATD-------AYELS 535
                 5*******************99.....58999988875.5688899************993332.......33333 PP

>> HALZ  Homeobox associated leucine zipper
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.0       1.8   4.6e+03      14      24 ..     477     487 ..     476     488 .. 0.71
   2 ?    9.6   2.0    0.0004         1      17      40 ..     574     597 ..     573     599 .. 0.91

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 1.8
        HALZ  14 YdaLksdydsL 24 
                 ++aL ++++++
  KOO25035.1 477 CEALDAEFEAV 487
                 67788888764 PP

  == domain 2  score: 9.6 bits;  conditional E-value: 0.0004
        HALZ  17 LksdydsLkkenekLkaelqeLke 40 
                 L+s+  +L++en +L+ael+ L++
  KOO25035.1 574 LQSETRALLEENARLRAELAALRQ 597
                 889999****************96 PP

>> ZapB  Cell division protein ZapB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   4.5   0.00043       1.1      13      47 ..     564     598 ..     560     606 .] 0.67

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.00043
        ZapB  13 iqkaidtitlLqmeieeLkeeneelkeenreleee 47 
                 i +ai+++ +Lq e ++L een+ l  e ++l++e
  KOO25035.1 564 IRQAIEMLPRLQSETRALLEENARLRAELAALRQE 598
                 66777777777777777777777777776666654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (606 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       591  (0.0329634); expected 358.6 (0.02)
Passed bias filter:                      434  (0.0242066); expected 358.6 (0.02)
Passed Vit filter:                        60  (0.00334653); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.59u 0.28s 00:00:00.87 Elapsed: 00:00:00.43
# Mc/sec: 4238.34
//
Query:       KOO25036.1  [L=303]
Description: aurora kinase a [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    6.9e-73  245.2   0.0    7.9e-73  245.1   0.0    1.0  1  Pkinase        Protein kinase domain
    3.9e-44  150.9   0.0    4.8e-44  150.6   0.0    1.0  1  Pkinase_Tyr    Protein tyrosine kinase
    2.4e-06   27.1   0.0    0.00015   21.2   0.0    2.2  2  Kinase-like    Kinase-like
    0.00059   19.2   0.2    0.00093   18.6   0.2    1.2  1  Kdo            Lipopolysaccharide kinase (Kdo/WaaP) family
     0.0013   17.8   0.1     0.0021   17.1   0.1    1.5  1  Haspin_kinase  Haspin like kinase domain
      0.005   16.8   5.5      0.025   14.5   0.7    2.5  3  APH            Phosphotransferase enzyme family
  ------ inclusion threshold ------
      0.019   14.5   0.0      0.048   13.2   0.0    1.5  1  RIO1           RIO1 family
       0.11   11.5   0.0        0.2   10.6   0.0    1.3  1  Seadorna_VP7   Seadornavirus VP7


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  245.1   0.0   3.5e-76   7.9e-73       1     264 []      36     288 ..      36     288 .. 0.94

  Alignments for each domain:
  == domain 1  score: 245.1 bits;  conditional E-value: 3.5e-76
                 EEEEEEEEEESSEEEEEEEETTTTEEEEEEEEECHCHCHHHH.HHHHHHHHHHHHHSCTTB--EEEEEEESSEEEEEEE--TTEBHHHHHHHHSS--HH CS
     Pkinase   1 yekleklGeGsfGkVykaveketgkivAvKkikkekakkkke.kkvlrEikilkklkhpnivrlyevfeekdelylvleyveggeladllerkgslsee 98 
                 +e+ + lG+G++G+Vy a+eke+g  vA+K+i k++ +     ++++ E++i  +l+hp ++rly++f++++++ylvle++ ggel ++l+++  +se+
  KOO25036.1  36 FEVGRALGKGKYGNVYLAREKESGVVVALKVIFKKQVDRHAIyDQLRDEVEIQSRLRHPGVLRLYGYFHDDKRVYLVLELATGGELYKRLQAEERFSEA 134
                 578899**************************99988877767******************************************************** PP

                 HHHHHHHHHHHHHHHHHHTTEE-SS-SGGGEEEETTTEEEE-SGTTSEESSSSCSBCTTTSCGGGS-HHHHTTSCBSHHHHHHHHHHHHHHHHHSS-ST CS
     Pkinase  99 eakkiakqilegleylHskgiiHrDlKpeNiLidekgelKitDFGlakelessskltsfvgtseYlAPEvlkeneyskkvDvWslGvilyelltgkppf 197
                 ++ ++++qi+ +l+ +H++++iHrD+KpeN+L+d +++lKi+DFG ++ ++++   ++f+gt +YlAPE+l++  y++ vDvW+lGv++ye ltg+ pf
  KOO25036.1 135 QTARWIAQIADALRVVHENKVIHRDIKPENLLLDAEDNLKIADFGWSTIAKHKR--KTFCGTLDYLAPEMLSDGVYDNRVDVWALGVLCYECLTGRAPF 231
                 *************************************************99976..******************************************* PP

                 TTSSHHHHHHHHHHTHHHHHHHCTSHH...HHHTTS-HHHHHHHHHHT-SSGCCSTTHHHHHTSGGG CS
     Pkinase 198 sgekgkekvekeldqlekilkilgetkeklpeaseiseeakdllkkllkkdpkkRltaeellqhpyl 264
                 + +++ +++++++ +          ++  +p + ++s+eak+l+  ll+k p +R+t e++l hp++
  KOO25036.1 232 ETSDSVDETHRNIIN----------MTPRYPDDVHVSDEAKNLIAALLQKLPADRMTLEQVLTHPFV 288
                 *55555544444444..........46799***********************************96 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  150.6   0.0   2.2e-47   4.8e-44       2     256 ..      37     283 ..      36     285 .. 0.92

  Alignments for each domain:
  == domain 1  score: 150.6 bits;  conditional E-value: 2.2e-47
                  EEEEEEEEESSEEEEEEEEETTTTSSEEEEEEEEE.STTSSHHH.HHHHHHHHHHHHTS-BTTB--EEEEEESSSSEEEEEE--TTEBHHHHHHHTCT CS
  Pkinase_Tyr   2 elgkklGeGafGkVvegtlkgekekkevkVavKtl.keeateee.keelleeakimkklkhpnivkllgvctkeepllivteyvkgGdLlkfLrkkek 97 
                  e+g+ lG+G++G+V+ ++ k    ++ v Va+K++ k++ +++   ++l +e++i ++l+hp +++l+g   +++++++v+e+++gG+L k L+++  
   KOO25036.1  37 EVGRALGKGKYGNVYLAREK----ESGVVVALKVIfKKQVDRHAiYDQLRDEVEIQSRLRHPGVLRLYGYFHDDKRVYLVLELATGGELYKRLQAE-- 128
                  67899************999....89999****996666665555788999*******************************************98.. PP

                  TTSBHHHHHHHHHHHHHHHHHHHHTTEEEST-SGGGEEEEETTEEEE-STTTHEETTTSSEEEETTSSTSGGGGS-HHHHHHSEEEHHHHHHHHHHHH CS
  Pkinase_Tyr  98 ekltlkdllsfalqvAkGmeyLeskklvHrdlaarNvLlsenkvvkisDfGLardiekddeyvkkeeaklpvkWmapEslkekkftsksDvWsfGvll 195
                  e+++  ++ ++++q+A++++ ++++k++Hrd+   N Ll+ ++  ki+DfG +         +k+++    + ++apE+l+++++  + DvW+ Gvl+
   KOO25036.1 129 ERFSEAQTARWIAQIADALRVVHENKVIHRDIKPENLLLDAEDNLKIADFGWSTIA-----KHKRKTFCGTLDYLAPEMLSDGVYDNRVDVWALGVLC 221
                  9***************************************************9977.....55666677889************************** PP

                  HHHHTTSSGTTTTS.HHHHHHHHH.HTTEES-BBTTSBHHHHHHHHHHT-SSGGGS--HHHHH CS
  Pkinase_Tyr 196 wEiftlgespypgl.kneevlekl.kegkrlekpekcpeelyelmkkcweedpeeRptfselv 256
                  +E +t g+ p+++  +  e+ +++ +   r +   ++++e ++l+   +++ p++R t+++++
   KOO25036.1 222 YECLT-GRAPFETSdSVDETHRNIiNMTPRYPDDVHVSDEAKNLIAALLQKLPADRMTLEQVL 283
                  *****.*****999655555555549999******************************9986 PP

>> Kinase-like  Kinase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.8   0.0     0.014        30      16      63 ..      38      85 ..      30      95 .. 0.87
   2 !   21.2   0.0   6.7e-08   0.00015     135     282 ..     127     270 ..     112     276 .. 0.71

  Alignments for each domain:
  == domain 1  score: 3.8 bits;  conditional E-value: 0.014
  Kinase-like 16 rgellkkgdrsvvfevkdqetgeplavkvfllpseaskkdlerlkeqe 63
                 +g  l+kg+ + v++++++e g  +a+kv   ++   +  +++l++++
   KOO25036.1 38 VGRALGKGKYGNVYLAREKESGVVVALKVIFKKQVDRHAIYDQLRDEV 85
                 567899***********************9999999999999999886 PP

  == domain 2  score: 21.2 bits;  conditional E-value: 6.7e-08
  Kinase-like 135 sethkkletiarlllTlqlirlaanLqakglvhgkftvdnllldekgglmlggftaLvragtkvvlsevekgfaPpEllgsrggytrknktkmthkld 232
                   e+++++++ ar +   q+       +++ ++h +++++nllld +  l++ +f+    a++k +       +  pE+l+  g y +         +d
   KOO25036.1 127 AEERFSEAQTARWIA--QIADALRVVHENKVIHRDIKPENLLLDAEDNLKIADFGWSTIAKHKRKTFCGTLDYLAPEMLSD-GVYDN--------RVD 213
                  344888889998765..555555556899*************************977777777663233355678999999.66666........89* PP

  Kinase-like 233 aWqlGlviyriwclklPltlateeakeew.......kfklckkipekvkaLlkkfLq 282
                  +W+lG+  y      +P++   +  +           +   ++++++ k L++ +Lq
   KOO25036.1 214 VWALGVLCYECLTGRAPFETSDSVDETHRniinmtpRYPDDVHVSDEAKNLIAALLQ 270
                  *****************9876553333223355555555555566666666666666 PP

>> Kdo  Lipopolysaccharide kinase (Kdo/WaaP) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.6   0.2   4.1e-07   0.00093     103     163 ..     119     175 ..     104     190 .. 0.83

  Alignments for each domain:
  == domain 1  score: 18.6 bits;  conditional E-value: 4.1e-07
         Kdo 103 qdLedllakwaelaeelkrallkavgrliaklhragvnHadlyaknillqqeeeeeaeiwl 163
                  +L + l+  ++++e+ +++ + +++ + +  h+ +v H+d+ + n+ll++e+    ++ +
  KOO25036.1 119 GELYKRLQAEERFSEAQTARWIAQIADALRVVHENKVIHRDIKPENLLLDAED----NLKI 175
                 567777887667***************************************98....3333 PP

>> Haspin_kinase  Haspin like kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   0.1   9.5e-07    0.0021     177     269 ..     102     196 ..      33     217 .. 0.81

  Alignments for each domain:
  == domain 1  score: 17.1 bits;  conditional E-value: 9.5e-07
  Haspin_kinase 177 dfyseqqlflvlllkdkGtdLeev...klkswkqalsifwqivkiLyvaEtkfeFEHRdLhldniLvdknlnvtlidlklsRlessegkvlytrld 269
                     f ++++++lvl+l  +G+  +++   +  s +q  +   qi+  L v+ ++ +  HRd++ +n L+d++ n  + d+  s + +++ k++   ld
     KOO25036.1 102 YFHDDKRVYLVLELATGGELYKRLqaeERFSEAQTARWIAQIADALRVVHEN-KVIHRDIKPENLLLDAEDNLKIADFGWSTIAKHKRKTFCGTLD 196
                    578899************8877773223334455555556******998655.678***************************9999988877777 PP

>> APH  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.2   0.8    0.0019       4.2       3     106 ..      40     151 ..      38     154 .. 0.72
   2 !   14.5   0.7   1.1e-05     0.025     149     194 ..     137     179 ..     125     184 .. 0.70
   3 ?   -1.8   0.0       1.1   2.4e+03     148     170 ..     261     285 ..     239     286 .. 0.69

  Alignments for each domain:
  == domain 1  score: 7.2 bits;  conditional E-value: 0.0019
                 EEE--.SSCEEEEEEETT.-.-EEEEE......E-TTS-HHHHHHHHHHHHHHHHTT-B--B-CTTBS-EEETTEEEEEEE----EE-SS.....HHHH CS
         APH   3 relsggasnrtylvttpa.g.ryvlrr......npparaaeeirrevallrlLakagvpvPevlagdtddeeigllfalieyvpgrsllr.....klsa 88 
                 r+l+ g +  +yl  +++ g  ++l++       ++a  + ++r+ev++   L+  gv   +++ +  dd   +l+ +l ++  g+ + r     + s+
  KOO25036.1  40 RALGKGKYGNVYLAREKEsGvVVALKVifkkqvDRHA-IYDQLRDEVEIQSRLRHPGV--LRLYGYFHDDKRVYLVLELATG--GELYKRlqaeeRFSE 133
                 6778887888888888886654445554444445555.77888999999999888876..8999988888888887777777..444444657777779 PP

                 HHHHHHHHHHHHHHCCHH CS
         APH  89 aqlpellealgeflaalh 106
                 aq+ +++++++++l+ +h
  KOO25036.1 134 AQTARWIAQIADALRVVH 151
                 999999999999998887 PP

  == domain 2  score: 14.5 bits;  conditional E-value: 1.1e-05
                 HHHHHHHHHHH--SSS-EEEE-SS-SGGGEEEC..TTEEEEE---T CS
         APH 149 eeqvlaalaallpgelptvllHgDlhpgNllvdpddgrvtGviDfe 194
                 + +++a++a+ l+   +  ++H+D++p Nll+d++d+    + Df+
  KOO25036.1 137 A-RWIAQIADALRVVHENKVIHRDIKPENLLLDAEDNLK--IADFG 179
                 2.266666666666678999*************887776..77777 PP

  == domain 3  score: -1.8 bits;  conditional E-value: 1.1
                 HHHHHHHHHHHH--S...SS-EEEE- CS
         APH 148 leeqvlaalaallpg...elptvllH 170
                 +   ++aal++ lp+    l++vl+H
  KOO25036.1 261 AKN-LIAALLQKLPAdrmTLEQVLTH 285
                 333.7777777777777778888888 PP

>> RIO1  RIO1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.0   2.2e-05     0.048      83     159 ..     111     188 ..     104     192 .. 0.76

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 2.2e-05
                 EEEE--EETTEEGGBHHHCG-..HHHHHHHHHHHHHHHHHHHHTSTEEESS-STTSEEEETT.EEEE--GTTEEETTSTT CS
        RIO1  83 lvmefigedgvaapklkdvee..eeeaeelyeevleemrklykeaglvHaDLSeyNvlvded.kvviIDvsQaveldhpn 159
                 lv+e+    g  +++l+  e+  e+++++  +++ +++r +++e++++H D+   N+l+d + ++ i D++ ++ ++h++
  KOO25036.1 111 LVLELAT-GGELYKRLQAEERfsEAQTARWIAQIADALR-VVHENKVIHRDIKPENLLLDAEdNLKIADFGWSTIAKHKR 188
                 6666666.4555566666664446777777788877655.556****************99889*******999999976 PP

>> Seadorna_VP7  Seadornavirus VP7
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0   9.1e-05       0.2     152     186 ..     145     177 ..     132     183 .. 0.86

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 9.1e-05
  Seadorna_VP7 152 kdLmdfhsestnllhGDcnpenlmcDknGylklvD 186
                   ++L  +h  +++++h D++penl+ D   +lk+ D
    KOO25036.1 145 DALRVVH--ENKVIHRDIKPENLLLDAEDNLKIAD 177
                   5788899..7899********************99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (303 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       554  (0.0308997); expected 358.6 (0.02)
Passed bias filter:                      483  (0.0269396); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.46u 0.26s 00:00:00.72 Elapsed: 00:00:00.40
# Mc/sec: 2262.49
//
Query:       KOO25037.1  [L=119]
Description: hypothetical protein Ctob_002550 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
  ------ inclusion threshold ------
      0.025   14.8   4.1      0.036   14.3   4.1    1.2  1  Ribosomal_L32p  Ribosomal L32p protein family
       0.12   11.4   5.5       0.15   11.1   5.5    1.0  1  FAM199X         Protein family FAM199X


Domain annotation for each model (and alignments):
>> Ribosomal_L32p  Ribosomal L32p protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   4.1   4.1e-06     0.036       2      24 ..      57      83 ..      56      93 .. 0.79

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 4.1e-06
                    --SS---HHHHHHHGGGT....----- CS
  Ribosomal_L32p  2 VPKrKtSksrrrkRrahw....klkap 24
                    VPK+++Sk+r rk  a+w    k++a 
      KOO25037.1 57 VPKKRKSKMRGRKQKANWfalaKRQAE 83
                    9*****************855554444 PP

>> FAM199X  Protein family FAM199X
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   5.5   1.7e-05      0.15     218     283 ..      14      82 ..       7      96 .. 0.65

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 1.7e-05
     FAM199X 218 ssnasmvssassstasvgssa.ansaani..srahsdsnlssaaerirdskkrskqrklqqkalrkrql 283
                 +s+a m s   ++++sv+ss+ +  +a++  +r++  s +  +  + r sk r +++k +  al krq 
  KOO25037.1  14 ASSALMFSMPPTAASSVSSSSgSVLSAQLraARTQQSSIVMWSVPKKRKSKMRGRKQKANWFALAKRQA 82 
                 44555555555555555444423344554115555555566888999********************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (119 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       863  (0.0481343); expected 358.6 (0.02)
Passed bias filter:                      466  (0.0259914); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.37u 0.24s 00:00:00.61 Elapsed: 00:00:00.38
# Mc/sec: 949.62
//
Query:       KOO25038.1  [L=514]
Description: hypothetical protein Ctob_002551 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.1e-25   89.5   0.3    6.1e-25   88.0   0.0    1.8  3  STIL_N    SCL-interrupting locus protein N-terminus


Domain annotation for each model (and alignments):
>> STIL_N  SCL-interrupting locus protein N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.0      0.13   2.4e+03       1      30 [.      64      90 ..      64      98 .. 0.67
   2 !   88.0   0.0   3.4e-29   6.1e-25     140     273 ..     218     350 ..     198     358 .. 0.80
   3 ?   -3.1   0.2      0.16   2.9e+03     370     394 ..     379     403 ..     378     404 .. 0.80

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 0.13
                XXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
      STIL_N  1 LWdpspaGeklllhlsyyrnlrlvllektl 30
                LWd++p G +l+l+ s    ++l +  + l
  KOO25038.1 64 LWDRTPLGAALTLQPS---TPHLAIPPRLL 90
                8*******99988754...45555555555 PP

  == domain 2  score: 88.0 bits;  conditional E-value: 3.4e-29
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX...XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
      STIL_N 140 lrariscsenlDnlsfdlhwaavtvattlevtpvkpvpiiPtaLarnLssalniaqvqgtlklGyLtmDqtRkLlLlLesDPkaysLPLvGiwlsGvth 238
                 + ++++c+ + D + + ++  a++++ tle+tp++++ ++       L++al+    +g+l++G+LtmDqtR+L+ l e DPka+  PLvG+w++Gv +
  KOO25038.1 218 MPVHCACATSPDCAALLVRLEALVPTLTLEATPLRALHVLSSP----LTAALRQPSFSGQLRTGFLTMDQTRRLICLGEGDPKAFEAPLVGVWVAGVRS 312
                 56899********************************997665....5666677778999*************************************** PP

                 XXXXXXXXXXXXXXXXXXXXXXXXX..X.XXXXXXXXX CS
      STIL_N 239 issPqvwalclrylfssslqervls..e.sgsfllvly 273
                 + +P+ wa+c+ry    s     l+  + s +fl + y
  KOO25038.1 313 LAEPYAWAACVRYARLRSPTAEALTasDgSCAFLCLSY 350
                 *************7665544333331131234555555 PP

  == domain 3  score: -3.1 bits;  conditional E-value: 0.16
                 --S----SS---XXXXXXXXXXXXX CS
      STIL_N 370 dlsPrpsPsPhpvsqqvkriePsvP 394
                 d++Pr  PsP+    ++ ++   vP
  KOO25038.1 379 DVAPRRQPSPYRLVGRAVQVALPVP 403
                 799*******998877777766665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (514 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       527  (0.0293937); expected 358.6 (0.02)
Passed bias filter:                      377  (0.0210274); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.50u 0.24s 00:00:00.74 Elapsed: 00:00:00.39
# Mc/sec: 3904.47
//
Query:       KOO25039.1  [L=224]
Description: uracil phosphoribosyltransferase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.6e-54  182.5   0.1    7.9e-54  182.3   0.1    1.0  1  UPRTase   Uracil phosphoribosyltransferase


Domain annotation for each model (and alignments):
>> UPRTase  Uracil phosphoribosyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  182.3   0.1   4.4e-58   7.9e-54       3     207 .]       7     208 ..       5     208 .. 0.94

  Alignments for each domain:
  == domain 1  score: 182.3 bits;  conditional E-value: 4.4e-58
     UPRTase   3 shpllkakltilRdastsrkdfrelvdriarllaeealsallpveevtvttplgkeysgelldeekialVpilRaGegmeealrellpearvghlglqr 101
                  hpl+ +k+t++R+a+ts+k + +l+++++++l++ea+++ l++e ++v+t +g+e+ +++ +  ++ +Vp+lR+G+gm+e++ e++ +a+v+hlg++r
  KOO25039.1   7 AHPLILHKITQMRKATTSKKYLSQLMKEVSTFLCYEATAS-LKLEACDVKTCVGDEKGQKIAE--RVGIVPVLRGGLGMVESMTEMVSNAQVWHLGIYR 102
                 79*************************************8.***************9888655..7********************************* PP

     UPRTase 102 eeetlepveyynkLPkkiaertvlllDpviaTGgsaaaaiqlLkergvgee.....kIlvlsvlaseegvkrlaeefpkvkvvtaavDeeldekgyivp 195
                 ++++l p eyynkLPkk++ +tv++lDp+  +G++a+aai++Lk +g   +      I++++++as+++++ ++e++p+v + ++ v     + + i+p
  KOO25039.1 103 DKTSLLPIEYYNKLPKKVTVHTVFVLDPMPISGATAVAAIDILKAWGESMKpqrelAIVFVCIVASTAAIQFISEAHPQVPIHVGLV-----DAASIMP 196
                 *********************************************974332222237****************************66.....5689*** PP

     UPRTase 196 GlGDfGDRlFgT 207
                 G+GD+ DRlFgT
  KOO25039.1 197 GMGDIADRLFGT 208
                 ***********9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (224 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       506  (0.0282224); expected 358.6 (0.02)
Passed bias filter:                      432  (0.024095); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.21s 00:00:00.62 Elapsed: 00:00:00.37
# Mc/sec: 1821.54
//
Query:       KOO25040.1  [L=435]
Description: hypothetical protein Ctob_008996 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.027   14.2   0.3       0.15   11.9   0.0    2.3  2  DivIC     Septum formation initiator
       0.11   12.9  12.4        1.4    9.4   2.4    3.2  3  DUF4200   Domain of unknown function (DUF4200)
       0.17   12.1   2.9        5.5    7.2   0.1    2.7  3  COG5      Golgi transport complex subunit 5
       0.97   10.1   3.6        4.4    8.0   0.0    2.9  2  YabA      Initiation control protein YabA


Domain annotation for each model (and alignments):
>> DivIC  Septum formation initiator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   3.2e-05      0.15      31      66 ..     201     236 ..     194     241 .. 0.88
   2 ?   -2.6   0.1         1   4.7e+03      34      49 ..     397     412 ..     394     413 .. 0.80

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 3.2e-05
                 HHHHHHHHHHHHHHHHHCC-XXXXXXXXXXXXXXXX CS
       DivIC  31 aelaklkaeneeLeaevkdLksdedyieerARselg 66 
                  el + ++++++Leaev++L+   + +e++ARs lg
  KOO25040.1 201 TELMEETKRRQSLEAEVQELRMRLSGVEAVARSPLG 236
                 56778899************************9988 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 1
                 HHHHHHHHHHHHHHCC CS
       DivIC  34 aklkaeneeLeaevkd 49 
                 a+l+  ++eL+a+v++
  KOO25040.1 397 ASLRISRQELDARVQQ 412
                 6788899999999875 PP

>> DUF4200  Domain of unknown function (DUF4200)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   2.4   0.00031       1.4      10      72 ..      38     100 ..      35     112 .. 0.94
   2 ?    1.8   0.7      0.07   3.1e+02      63      93 ..     127     151 ..     102     164 .. 0.47
   3 ?    6.8   0.1    0.0019       8.7      48      90 ..     183     225 ..     178     232 .. 0.86

  Alignments for each domain:
  == domain 1  score: 9.4 bits;  conditional E-value: 0.00031
     DUF4200  10 evqealeakkeeiqrleealkqreeelekkeqeleedllkfdkflkendakraralkkaeeer 72 
                 +++++lea +ee+q ++ a ++++ ++ k  +     ++  +  l+e+ +k+   l+ a++e+
  KOO25040.1  38 LLEKQLEAVREEMQSTMVATEKKWLDIAKGVETSTSAAIAAESKLREHSDKQLGLLRDAHQET 100
                 789*********************************************************998 PP

  == domain 2  score: 1.8 bits;  conditional E-value: 0.07
     DUF4200  63 ralkkaeeerklkkekeaeikklkaeietlk 93 
                   ++ +e+      ++++e +kl + i++l+
  KOO25040.1 127 AFRQSMET------RYAKEARKLAEVIAELR 151
                 33333333......33333333333333333 PP

  == domain 3  score: 6.8 bits;  conditional E-value: 0.0019
     DUF4200  48 lkfdkflkendakraralkkaeeerklkkekeaeikklkaeie 90 
                 + +d+ +ke+ +  +r   +  ee+k++++ eae+++l+  ++
  KOO25040.1 183 ASLDEKVKECGRLIVRMGTELMEETKRRQSLEAEVQELRMRLS 225
                 5678889999999999999999***************998876 PP

>> COG5  Golgi transport complex subunit 5
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.1      0.99   4.4e+03      32      63 ..      33      64 ..       4      84 .. 0.63
   2 ?    7.2   0.1    0.0012       5.5      17      82 ..     100     166 ..      96     176 .. 0.88
   3 ?    4.4   0.1    0.0087        39      46      86 ..     189     229 ..     175     232 .. 0.83

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 0.99
                XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
        COG5 32 stplkrlnydiqeldkrlrqlitsnhleLleh 63
                +++ + l+  ++ +++++++ +++ +++ l+ 
  KOO25040.1 33 DVRGSLLEKQLEAVREEMQSTMVATEKKWLDI 64
                44444455566666666666666666665554 PP

  == domain 2  score: 7.2 bits;  conditional E-value: 0.0012
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXX CS
        COG5  17 llkatnnnddteldlstplkrlnydiqeldkrlrqlitsnhleLlehlskskslss.vlselkssle 82 
                  l+a+++ ++t +d s  l rl  d++  ++ +++   +++ +L e + + +++ + + + ++  +e
  KOO25040.1 100 TLRAASEFQQTAIDHSEVLRRLDADLNAFRQSMETRYAKEARKLAEVIAELREKGGpMSEAVEVAIE 166
                 688899999************************************9999999988877777766665 PP

  == domain 3  score: 4.4 bits;  conditional E-value: 0.0087
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
        COG5  46 dkrlrqlitsnhleLlehlskskslssvlselksslesLsa 86 
                  k+  +li++  +eL+e++++++sl++ ++el+ +l+ ++a
  KOO25040.1 189 VKECGRLIVRMGTELMEETKRRQSLEAEVQELRMRLSGVEA 229
                 456667899999*********************99998876 PP

>> YabA  Initiation control protein YabA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.1   2.4      0.33   1.5e+03      11      52 ..      91     132 ..       5     154 .. 0.67
   2 ?    8.0   0.0   0.00097       4.4       9      53 ..     181     225 ..     173     241 .. 0.85

  Alignments for each domain:
  == domain 1  score: -0.1 bits;  conditional E-value: 0.33
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
        YabA  11 eeleeqleelleeleelkeelaelleenaeLeleneklrerl 52 
                   l +  +e+l+  +e +++  +  e  ++L ++ + +r+ +
  KOO25040.1  91 GLLRDAHQETLRAASEFQQTAIDHSEVLRRLDADLNAFRQSM 132
                 334444444555555555555555555555555555555555 PP

  == domain 2  score: 8.0 bits;  conditional E-value: 0.00097
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHX CS
        YabA   9 kleeleeqleelleeleelkeelaelleenaeLeleneklrerle 53 
                 + ++l+e+++e+ + + ++ +el e +++ ++Le+e ++lr rl+
  KOO25040.1 181 AAASLDEKVKECGRLIVRMGTELMEETKRRQSLEAEVQELRMRLS 225
                 56789999**********************************994 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (435 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       973  (0.0542696); expected 358.6 (0.02)
Passed bias filter:                      519  (0.0289475); expected 358.6 (0.02)
Passed Vit filter:                        63  (0.00351386); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.58u 0.24s 00:00:00.82 Elapsed: 00:00:00.40
# Mc/sec: 3240.79
//
Query:       KOO25041.1  [L=303]
Description: ohcu decarboxylase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.1e-42  146.1   1.5    1.4e-42  145.8   1.5    1.1  1  OHCU_decarbox  OHCU decarboxylase
    4.6e-32  111.0   0.0    8.1e-32  110.2   0.0    1.4  1  Transthyretin  HIUase/Transthyretin family


Domain annotation for each model (and alignments):
>> OHCU_decarbox  OHCU decarboxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  145.8   1.5   1.6e-46   1.4e-42       3     155 .]      22     176 ..      20     176 .. 0.97

  Alignments for each domain:
  == domain 1  score: 145.8 bits;  conditional E-value: 1.6e-46
                    S-HHHHHHHHCCCSTTHHHHHHHHHCG.S-SSHHHHHHHHHHHCCCS-HHHHHHHHCTS--TTSCCCHHTHCHHHHHHHCCCTTT.TCHHHHHHHH CS
  OHCU_decarbox   3 lseeeltavldtlfepspwlaelalar.pfssyeaLiaavaealealseeelleilsaHPrLGekaakkkklsalsrkEqaglgl.aaseeeleeL 96 
                     s+e++++++++++e+spw+ae+a+++ pf+s+ aL +a+++a++a+++ee  ++l+aHP+L++kaa +++l+a+s++Eq++ gl +++e+e++++
     KOO25041.1  22 YSKEAFVDAVGSVYEKSPWIAERAYEArPFESLSALRDALRAACTAATDEEHVALLRAHPDLAGKAALAGELTAESTEEQRRSGLgSLTEDEMKQF 117
                    689**********************555********************************************************99********** PP

                    HHHHHHHHHHHSS-----GCC--HHHHHHHHHHHTTS-HHHHHHHHHHHHHHHHHHHHH CS
  OHCU_decarbox  97 aelnaeYeekFGlrfvvfvngrsrkeIlaelerRlendpekElrealqemckIardRlk 155
                    +eln +Y++kFG++f+++v++ +++ Ila++ +Rl+n+  +E+ +a+++++kIa +Rl+
     KOO25041.1 118 NELNGAYKAKFGFPFILAVRNANKATILASFAARLHNSAHEERSTAIAQVHKIAWMRLR 176
                    **********************999********************************96 PP

>> Transthyretin  HIUase/Transthyretin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  110.2   0.0     9e-36   8.1e-32       1     110 []     187     302 ..     187     302 .. 0.94

  Alignments for each domain:
  == domain 1  score: 110.2 bits;  conditional E-value: 9e-36
                    EEEEEEETTTTEE-TS-EEEEEEECTTSSEEEEEEEEE--TTSCESS.SSEEGCGB-SEEEEEEEEHHHHHHHTTS......SESCEEEEEEES.T CS
  Transthyretin   1 itthvLdttaGkpaagvevelekleeseeeaellaesttdadGrvke.llaekeeleagtyklrfeteeYfekegtes....ffpevevvfevk.e 90 
                    +t+h Ldt++G+paag+++el +l+e++ +++ la+ +t+adGr++  +  ++++++ gty+ +f +++Yf+++g+      f+  v+++f ++ +
     KOO25041.1 187 LTCHALDTARGCPAAGMTIELRRLDEASGAWQPLASFVTNADGRLTGgPALKGAAFTVGTYEWTFGVGDYFAAAGVPIsgtpFLADVPLRFGIDdP 282
                    7*******************************************97615667999******************998667889************88 PP

                    TSEEEEEEEEETTEEEEE-B CS
  Transthyretin  91 eehyhvPlllspfgYstYrG 110
                    e+hyhvPll+sp++YstYrG
     KOO25041.1 283 EAHYHVPLLCSPWSYSTYRG 302
                    8******************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (303 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       403  (0.0224776); expected 358.6 (0.02)
Passed bias filter:                      347  (0.0193541); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.41u 0.23s 00:00:00.64 Elapsed: 00:00:00.38
# Mc/sec: 2397.00
//
Query:       KOO25042.1  [L=187]
Description: hypothetical protein Ctob_008998 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (187 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       258  (0.0143901); expected 358.6 (0.02)
Passed bias filter:                      207  (0.0115455); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.42u 0.23s 00:00:00.65 Elapsed: 00:00:00.42
# Mc/sec: 1343.28
//
Query:       KOO25043.1  [L=713]
Description: lipid a export ATP-binding permease protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    4.4e-46  157.7   5.8    9.1e-46  156.7   5.8    1.5  1  ABC_membrane    ABC transporter transmembrane region
    3.8e-07   30.3  11.1    9.4e-07   29.1   9.0    2.2  2  C1_2            C1 domain
     0.0011   18.7   6.4     0.0026   17.5   6.4    1.5  1  ZZ              Zinc finger, ZZ type
  ------ inclusion threshold ------
       0.37   10.0   3.3       0.17   11.1   0.1    2.1  2  ABC_membrane_3  ABC transporter transmembrane region


Domain annotation for each model (and alignments):
>> ABC_membrane  ABC transporter transmembrane region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  156.7   5.8     2e-49   9.1e-46       2     274 .]     359     655 ..     358     655 .. 0.96

  Alignments for each domain:
  == domain 1  score: 156.7 bits;  conditional E-value: 2e-49
                   HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSS.....TCCHH....................HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
  ABC_membrane   2 iliillailagvlsplfplvlgrildtlldk.....gdpet....................ealnvysllllllglaqfilallqsyllnvtgerls 73 
                   +++i +++   +++++ p + grild+++       +                        +    +   +l+l ++ +il+ lqs  ++v+g +++
    KOO25043.1 359 VVAIACLASKSIINLFLPNLQGRILDHVVAAraacaA---NasaalsdetpdtapacdearQSFRETVAHYLSLSIVLGILGGLQSLSFMVVGRKIM 452
                   5789999999*******************98666652...0445788889999********999999****************************** PP

                   HHHHHHHHHHHHCSTHHHHHHSCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
  ABC_membrane  74 krlrrklfkkilrqpmsffdtnsvGellsrltndvsklrdglgeklglffqslltfvgglivmfylgwkltlvllailpliilvsaviakilkklkk 170
                   +++r +lf++i  q+++ffd  ++G+l++rlt dv+ + + l+++l +++ +l++++gg++++f+++w+l+++ + +++ i+ v+  +a ++ k++k
    KOO25043.1 453 VWIRGQLFRRIVVQDIAFFDGFRTGDLVQRLTGDVRAMIQPLQNTLATLLSNLILLFGGVVMCFVTSWRLSMLAFTTVLPIMHVTESYAWWSGKINK 549
                   ************************************************************************************************* PP

                   HHHHHHHHHHHHHHHHHHTHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT..TSSTHHHHHHHHH CS
  ABC_membrane 171 keqkavakassvaeEslsgirtVkafgreeyflekfekaleeakkagikkaianglligitqllgllsyalalwfGttlvis..gelsvgdlvvfls 265
                   +  +++a+  s+++E+++++rtV+a   e++++e+fe  l+ a+++g+k ai+ ++++++++ l l + +l+lw+G++  ++  g ++vg+l+++ +
    KOO25043.1 550 QIYQHYADGASIVTEAFQNVRTVRAVSSEPFEIERFEVTLRLALSKGVKDAIFGAFSNAFNNYLDLGAGVLILWYGGSIAMEpeGSITVGNLITYQL 646
                   *********************************************************************************9989************ PP

                   HHHHHHHHH CS
  ABC_membrane 266 lfailfgal 274
                   ++++l+++l
    KOO25043.1 647 YWNMLNNSL 655
                   ***999875 PP

>> C1_2  C1 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.6   0.0      0.16   7.1e+02      14      25 ..     119     130 ..     112     138 .. 0.79
   2 !   29.1   9.0   2.1e-10   9.4e-07       2      46 ..     272     313 ..     271     314 .. 0.96

  Alignments for each domain:
  == domain 1  score: 0.6 bits;  conditional E-value: 0.16
        C1_2  14 dssesfnCsaCg 25 
                 +  +++ CsaC 
  KOO25043.1 119 PARSNGVCSACH 130
                 6778999****7 PP

  == domain 2  score: 29.1 bits;  conditional E-value: 2.1e-10
        C1_2   2 sHpHpLtlskgedssesfnCsaCgrkidgffYsCseCdfslhvrC 46 
                  H+H+L +     +  +++C+ C++++ g +Y+C++Cdf ++  C
  KOO25043.1 272 FHKHRLYFR---VDLPMHRCDMCRNQSRGGMYHCQMCDFDVCPAC 313
                 7********...9*******************************9 PP

>> ZZ  Zinc finger, ZZ type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5   6.4   5.8e-07    0.0026       6      38 ..     287     317 ..     285     322 .. 0.89

  Alignments for each domain:
  == domain 1  score: 17.5 bits;  conditional E-value: 5.8e-07
                 E-TTT-S..EESSEEEESSSSS-EE-HHHHHH. CS
          ZZ   6 tCdgCseapligvRyhclrcsdYDLCqsCfsth 38 
                  Cd C +  + g  yhc+ c d+D C  Cf+++
  KOO25043.1 287 RCDMCRN-QSRGGMYHCQMC-DFDVCPACFNKK 317
                 6******.9***********.8*********94 PP

>> ABC_membrane_3  ABC transporter transmembrane region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.3   0.6       1.9   8.7e+03      39      60 ..       9      30 ..       7      41 .. 0.52
   2 ?   11.1   0.1   3.8e-05      0.17     108     172 ..     490     554 ..     481     572 .. 0.85

  Alignments for each domain:
  == domain 1  score: -4.3 bits;  conditional E-value: 1.9
  ABC_membrane_3 39 dllagkvaqlliyalvvlllil 60
                    +++  k+a+ + ++ +++ll++
      KOO25043.1  9 AMILSKSAAKVRFIGILVLLVV 30
                    5554444444444444444443 PP

  == domain 2  score: 11.1 bits;  conditional E-value: 3.8e-05
  ABC_membrane_3 108 lvdFlEkhlPtlitavvsivgavvmllvlefslglsallillllllllprFarrnerlnikLNne 172
                     +++ l + l tl+++++ ++g+vvm  v +  l+++a++ +l ++ +   +a  + + n ++ ++
      KOO25043.1 490 MIQPLQNTLATLLSNLILLFGGVVMCFVTSWRLSMLAFTTVLPIMHVTESYAWWSGKINKQIYQH 554
                     5566778899**************************************99998887777776555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (713 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       662  (0.0369234); expected 358.6 (0.02)
Passed bias filter:                      423  (0.0235931); expected 358.6 (0.02)
Passed Vit filter:                        48  (0.00267723); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.59u 0.31s 00:00:00.89 Elapsed: 00:00:00.45
# Mc/sec: 4805.85
//
Query:       KOO25044.1  [L=471]
Description: transcriptional activator myb-like protein, partial [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    6.2e-32  109.5   3.3    7.9e-16   58.0   0.1    2.6  2  Myb_DNA-binding  Myb-like DNA-binding domain
    3.1e-22   78.6   0.4    2.7e-15   56.3   0.1    2.4  2  Myb_DNA-bind_6   Myb-like DNA-binding domain
    1.8e-05   24.6   6.9    5.8e-05   22.9   0.1    3.1  3  Myb_DNA-bind_7   Myb DNA-binding like
    4.2e-05   23.5   0.0       0.16   12.0   0.0    2.4  2  SLIDE            SLIDE
  ------ inclusion threshold ------
      0.013   15.6   0.0        1.2    9.3   0.0    2.8  1  Rap1_C           TRF2-interacting telomeric protein/Rap1 - C 
       0.05   13.8   0.1         11    6.3   0.0    2.3  2  SANT_DAMP1_like  SANT/Myb-like domain of DAMP1
       0.38   11.1   1.8        6.6    7.1   0.7    2.5  2  MADF_DNA_bdg     Alcohol dehydrogenase transcription factor M
        9.6    4.3  15.7         13    3.9  15.7    1.1  1  Nop14            Nop14-like family


Domain annotation for each model (and alignments):
>> Myb_DNA-binding  Myb-like DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.6   0.6   3.5e-17   7.8e-14       1      46 []      43      89 ..      43      89 .. 0.97
   2 !   58.0   0.1   3.5e-19   7.9e-16       1      44 [.      95     138 ..      95     140 .. 0.97

  Alignments for each domain:
  == domain 1  score: 51.6 bits;  conditional E-value: 3.5e-17
                     CSSSBHHHHHHHHHHHHHHT.TCHHHHHHHHTSS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgkWteeEdelLleavkkhG.nrWkkIaerlggRtekqcrsrwrnyl 46
                     + +Wte Ed++L+e v k+G  rW++Ia+ + gR +kqcr+rw n+l
       KOO25044.1 43 KRAWTEAEDKQLIETVGKFGaQRWSLIASNMTGRVGKQCRERWFNHL 89
                     579******************************************97 PP

  == domain 2  score: 58.0 bits;  conditional E-value: 3.5e-19
                      CSSSBHHHHHHHHHHHHHHTTCHHHHHHHHTSS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgkWteeEdelLleavkkhGnrWkkIaerlggRtekqcrsrwrn 44 
                      +g+WteeEd+l++++v+++G rW++I +rl+gRt++++++r+++
       KOO25044.1  95 KGEWTEEEDQLIADGVAELGTRWSEIVKRLPGRTDNAIKNRFNS 138
                      79****************************************96 PP

>> Myb_DNA-bind_6  Myb-like DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.3   0.1   1.2e-18   2.7e-15       1      58 [.      46     104 ..      46     105 .. 0.96
   2 !   28.5   0.0   5.8e-10   1.3e-06       1      41 [.      98     138 ..      98     149 .. 0.91

  Alignments for each domain:
  == domain 1  score: 56.3 bits;  conditional E-value: 1.2e-18
  Myb_DNA-bind_6   1 WteeEdeiLlklvekyg.ndWknIaeal.nrRtpkqcfdrwknkLrpkisrkkwskeedi 58 
                     Wte+Ed+ L++ v k+g + W++Ia+ + + R  kqc++rw n+L+p +++++w++eed+
      KOO25044.1  46 WTEAEDKQLIETVGKFGaQRWSLIASNMtG-RVGKQCRERWFNHLCPAVKKGEWTEEEDQ 104
                     ****************9679********66.****************************8 PP

  == domain 2  score: 28.5 bits;  conditional E-value: 5.8e-10
  Myb_DNA-bind_6   1 WteeEdeiLlklvekygndWknIaealnrRtpkqcfdrwkn 41 
                     WteeEd++++++v + g  W++I + l+ Rt +++++r+++
      KOO25044.1  98 WTEEEDQLIADGVAELGTRWSEIVKRLPGRTDNAIKNRFNS 138
                     ***************************55***********9 PP

>> Myb_DNA-bind_7  Myb DNA-binding like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.2   0.1     0.037        83       7      47 ..      42      83 ..      38      88 .. 0.82
   2 !   22.9   0.1   2.6e-08   5.8e-05       7      63 ..      94     150 ..      91     176 .. 0.83
   3 ?    0.4   0.5      0.27   6.1e+02      38      69 ..     215     246 ..     212     261 .. 0.78

  Alignments for each domain:
  == domain 1  score: 3.2 bits;  conditional E-value: 0.037
  Myb_DNA-bind_7  7 ktkkWskeetekFYkaLsqfGtD.FsliaklfpkrtrrqlKl 47
                     ++ W+++e ++  + + +fG   +slia+ +++r  +q ++
      KOO25044.1 42 AKRAWTEAEDKQLIETVGKFGAQrWSLIASNMTGRVGKQCRE 83
                    5789*****************754899998888887777665 PP

  == domain 2  score: 22.9 bits;  conditional E-value: 2.6e-08
  Myb_DNA-bind_7   7 ktkkWskeetekFYkaLsqfGtDFsliaklfpkrtrrqlKlKFkkEerknpelieka 63 
                     k+ +W++ee ++  +++ ++Gt +s i k +p+rt++ +K++F++ +r+ ++l ++a
      KOO25044.1  94 KKGEWTEEEDQLIADGVAELGTRWSEIVKRLPGRTDNAIKNRFNSNQRRMQRLQRRA 150
                     6789*****************************************999877666555 PP

  == domain 3  score: 0.4 bits;  conditional E-value: 0.27
  Myb_DNA-bind_7  38 pkrtrrqlKlKFkkEerknpeliekalkkrke 69 
                     +kr+r++ K+  k Ee ++ + +e++  ++ e
      KOO25044.1 215 KKRSRSKRKKALKVEEEEEEAGVESMWGEEDE 246
                     57999999999999999999999988766555 PP

>> SLIDE  SLIDE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.0   0.0   7.3e-05      0.16      44      78 ..      39      72 ..      11      86 .. 0.80
   2 !    9.3   0.0   0.00048       1.1      42     104 ..      88     151 ..      72     154 .. 0.71

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 7.3e-05
       SLIDE 44 psnkgkkeyteeeDrfllvllakyGygnyekikke 78
                + n+++  +te eD+ l+ ++ k+G +++  i ++
  KOO25044.1 39 VVNAKRA-WTEAEDKQLIETVGKFGAQRWSLIASN 72
                4455555.*********************999765 PP

  == domain 2  score: 9.3 bits;  conditional E-value: 0.00048
       SLIDE  42 yppsnkgkkeyteeeDrfllvllakyGygnyekikkei..resplFrfDwflksrtpqelqkRce 104
                 +   + +k e+teeeD+ +   +a++G + + +i k++  r+++  +  +  + r  q lq+R++
  KOO25044.1  88 HLCPAVKKGEWTEEEDQLIADGVAELGTR-WSEIVKRLpgRTDNAIKNRFNSNQRRMQRLQRRAQ 151
                 4444456667*****************98.99998887333444444444555677888888876 PP

>> Rap1_C  TRF2-interacting telomeric protein/Rap1 - C terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3   0.0   0.00053       1.2      36      67 ..      83     146 ..      18     157 .. 0.73

  Alignments for each domain:
  == domain 1  score: 9.3 bits;  conditional E-value: 0.00053
      Rap1_C  36 r...gkglpknkrGiWteedDeaL.............................kagderdlerl 67 
                 +   ++  p+ k+G Wtee+D+                                ++++r ++rl
  KOO25044.1  83 ErwfNHLCPAVKKGEWTEEEDQLIadgvaelgtrwseivkrlpgrtdnaiknrFNSNQRRMQRL 146
                 3355667889999999999999997777777666666666666666655544433455555555 PP

>> SANT_DAMP1_like  SANT/Myb-like domain of DAMP1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.1   0.0     0.011        25      26      53 ..      43      71 ..      35      88 .. 0.82
   2 ?    6.3   0.0    0.0048        11      24      69 ..      93     147 ..      79     150 .. 0.78

  Alignments for each domain:
  == domain 1  score: 5.1 bits;  conditional E-value: 0.011
  SANT_DAMP1_like 26 eedWtkeetdyLfdlckeyd.lrfvviaD 53
                     ++ Wt+ e ++L++ + ++   r+ +ia 
       KOO25044.1 43 KRAWTEAEDKQLIETVGKFGaQRWSLIAS 71
                     356****************7269999986 PP

  == domain 2  score: 6.3 bits;  conditional E-value: 0.0048
  SANT_DAMP1_like  24 lkeedWtkeetdyLfdlckeydlrfvviaDryelek.........kkkrsledlk 69 
                      +k+ +Wt+ee + + d + e  +r+  i  r   ++         +++r ++ l+
       KOO25044.1  93 VKKGEWTEEEDQLIADGVAELGTRWSEIVKRLPGRTdnaiknrfnSNQRRMQRLQ 147
                      45578***********************999877556666666666666666666 PP

>> MADF_DNA_bdg  Alcohol dehydrogenase transcription factor Myb/SANT-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.1   0.0      0.11   2.4e+02      27      51 ..      64      87 ..      60      91 .. 0.80
   2 ?    7.1   0.7    0.0029       6.6      29      73 ..     117     160 ..     111     167 .. 0.79

  Alignments for each domain:
  == domain 1  score: 2.1 bits;  conditional E-value: 0.11
  MADF_DNA_bdg 27 kaweeiaeelnekvdveeckkkwkn 51
                  + w+ ia+++      ++c+++w n
    KOO25044.1 64 QRWSLIASNMTG-RVGKQCRERWFN 87
                  679*******74.44569*****76 PP

  == domain 2  score: 7.1 bits;  conditional E-value: 0.0029
  MADF_DNA_bdg  29 weeiaeel.nekvdveeckkkwknLRdryrrelrkkksseskekkk 73 
                   w+ei+++l +   + +++k+++++   r +r  r+++++e++e+++
    KOO25044.1 117 WSEIVKRLpG--RTDNAIKNRFNSNQRRMQRLQRRAQATERGESEA 160
                   ********54..55568******************99555554443 PP

>> Nop14  Nop14-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.9  15.7    0.0056        13     296     390 ..     145     259 ..     134     328 .. 0.46

  Alignments for each domain:
  == domain 1  score: 3.9 bits;  conditional E-value: 0.0056
       Nop14 296 ge................edeeeeeekkkkkkke................asaDd.ldddfvleeeeeeeefglgkgl.kataeeeeeededdfeeddd 360
                                      ++++        +                  aDd  dd+  +ee  +e e g g+g+ k    ++ ++ ++++  + +
  KOO25044.1 145 RLqrraqatergeseakpA--SKRS--------NggskrkkreggadgadDGADDgADDGALEEEGLDEGEGGAGSGVvK----KKRSRSKRKKALKVE 229
                 2222233333333444321..1111........12333344466786555445551334444444445555555555532....222222222233333 PP

       Nop14 361 lveseseeeeeeeeedeeeeedeeeeeeee 390
                 ++e+e  +e+   eedee e++e  +  ++
  KOO25044.1 230 EEEEEAGVESMWGEEDEEVEDEEAVAVTAD 259
                 334444444433333333333333332222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (471 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1044  (0.0582297); expected 358.6 (0.02)
Passed bias filter:                      475  (0.0264934); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.57u 0.26s 00:00:00.83 Elapsed: 00:00:00.41
# Mc/sec: 3416.29
//
Query:       KOO25045.1  [L=713]
Description: peptidase m14 carboxypeptidase a [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    4.6e-40  138.2   0.0    7.8e-40  137.5   0.0    1.2  1  Peptidase_M14  Zinc carboxypeptidase


Domain annotation for each model (and alignments):
>> Peptidase_M14  Zinc carboxypeptidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  137.5   0.0   4.3e-44   7.8e-40       6     286 ..     130     413 ..     127     415 .. 0.84

  Alignments for each domain:
  == domain 1  score: 137.5 bits;  conditional E-value: 4.3e-44
                    HHHHHHSTTTE.EEEEEEE-TTS-EEEEEEE-SSTT..STTST-CEEEEEE-SSTT-HHHHHHHHHHHHHHHHHT.TTSHHHHHHHHHEEEEEES- CS
  Peptidase_M14   6 dalaarypdlv.rlvsiGkSvegRplkvlkisssat..eaeegkpvvlidggiHarEwigsalllylleqLlsaY.gedeeikellddtdiyilpv 97 
                      l +ryp+l  + + +G+S  gR ++v  ++++    +    +p+vl+++ +HarE  +   l+ +l++ l++  ++   + +ll++ +++++p 
     KOO25045.1 130 SRLVSRYPSLIsTPIRMGTSRLGRAIEVWCVTDGLVscSGGGDRPAVLYTALVHAREPATLMCLVHALREVLRDAeMNVGGAANLLRTRKLLFMPL 225
                    56778999976156999****************9879999********************************998666667889************ PP

                    STHHHHHHHHH....T-TTTTST-SBCTTS......SSBS--GGGSSSSSTTSS..SSBSSTTSTTBHHSSTT.SHHHHHHHHHHHHTTEEEEEEE CS
  Peptidase_M14  98 lNPDGyeysst....edrlwrknrsnakes......sceGvDlnRnFpdlwnse..gastspcsetyrgpapfsepetravlefiqkknivlfidl 181
                    +NPDGy+          ++ rkn    ++          GvDlnRnF ++++    g+s s cse+yrg ++fsepet+a++e+++++  + ++ +
     KOO25045.1 226 ANPDGYAWNERtrprGGGMKRKN---GAQTcqppdtENDGVDLNRNFGFKYAYDnvGSSPSGCSEEYRGTSAFSEPETQAIREVVRRHAPKIVLHW 318
                    ******99887655544444444...4433445666899*******98887555549*************************************** PP

                    EESSSEEEESHSSSS---SS-TTHHHHHHHHHHHHHHHCHTTTTEEE-EEEEEHHHHT---SS-HHHHHHHHTT-SEEEEEEESSSSSSTTS--GG CS
  Peptidase_M14 182 hsysqvilypygstrdeispppddeelkslarkyaealqkmvrgteylsegitngaliyeasggmddwayertgvkfeytlelrdegkqgflppas 277
                    h+ ++ i +p++   +   + +d   ++++a+++a ++++  +       g++     y+++g++ddw  + ++  +++t+e++  + +gf+pp+s
     KOO25045.1 319 HGWGNDIAFPFSFDWHAPMSNSDLGMFQEFANEMAANNHY-AS-------GRAWESVGYTTNGEADDWGWGDQRA-ASLTIEVGSSQ-DGFWPPPS 404
                    ********99997775346666667799999999999988.33.......323333348899*************.********988.8******* PP

                    GHHHHHHHH CS
  Peptidase_M14 278 qiepeaeen 286
                     i+p+a e 
     KOO25045.1 405 RILPIAMES 413
                    ****98775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (713 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       347  (0.0193541); expected 358.6 (0.02)
Passed bias filter:                      244  (0.0136092); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.53u 0.24s 00:00:00.77 Elapsed: 00:00:00.39
# Mc/sec: 5508.07
//
Query:       KOO25046.1  [L=788]
Description: eukaryotic translation initiation factor 2d-like protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.3e-17   62.9   0.0    5.9e-17   62.1   0.0    1.4  1  Pre-PUA    Pre-PUA-like domain
    1.2e-11   44.9   0.0    5.8e-11   42.8   0.0    2.1  2  SUI1       Translation initiation factor SUI1
     0.0085   16.0   0.1      0.017   15.0   0.1    1.4  1  Kin17_mid  Domain of Kin17 curved DNA-binding protein
  ------ inclusion threshold ------
       0.01   15.8   0.2      0.023   14.7   0.2    1.6  1  PUA        PUA domain


Domain annotation for each model (and alignments):
>> Pre-PUA  Pre-PUA-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.1   0.0   1.3e-20   5.9e-17       1      87 []       5      93 ..       5      93 .. 0.94

  Alignments for each domain:
  == domain 1  score: 62.1 bits;  conditional E-value: 1.3e-20
     Pre-PUA  1 fkkkfkvksntqlksSdrrkLraklleqfpslseeqleellpkke..evkvvklqgehvelyvvdgep.lffqdregellPtlytlwkyP 87
                fk + k+ +++ l + d ++Lr++l+e+fp+l+++ l+++l  ke  +v+++k++ + + lyv ++ p  ff+d  g ++Ptl+tlw +P
  KOO25046.1  5 FKAESKITTQSILGKADVKRLRSQLMEEFPLLTKKMLDKVLRVKEetDVHLLKCS-NGTHLYVPGDGPaAFFDDGFGAVFPTLFTLWMLP 93
                89999**************************************9867999*****.*******98776369*****************99 PP

>> SUI1  Translation initiation factor SUI1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.0      0.89     4e+03      41      61 ..     655     684 ..     643     687 .. 0.69
   2 !   42.8   0.0   1.3e-14   5.8e-11       3      74 ..     694     769 ..     692     772 .. 0.87

  Alignments for each domain:
  == domain 1  score: -1.6 bits;  conditional E-value: 0.89
        SUI1  41 kfacsgsvvk.dgg........eeiqvQGd 61 
                 +fa+  s ++ +++        + ++vQG 
  KOO25046.1 655 TFATHMSLAElKASlkermtafHRVEVQGE 684
                 677777776653323345677889999996 PP

  == domain 2  score: 42.8 bits;  conditional E-value: 1.3e-14
        SUI1   3 pkihirleqrgg.rKkvTtvsgleafgidlkklakelkkkfacsgsvvk...dgg...eeiqvQGdqrkkvaelLteky 74 
                 ++i+i++++  g +K  T+vsgle+f i ++ ++++lk k++c + v k   + +   +e+ +QG   ++v+++L + y
  KOO25046.1 694 KPISIEMKRAAGhNK--THVSGLESFCISPQAVSDALKVKLGCTTAVLKlpgN-NtkdVEVLLQGHCVNEVCDYLRDVY 769
                 789999999999777..******************************997642.13569****************8765 PP

>> Kin17_mid  Domain of Kin17 curved DNA-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.1   3.8e-06     0.017      58     108 ..     305     355 ..     301     366 .. 0.83

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 3.8e-06
   Kin17_mid  58 aTkwtsLteFvkyLgkegkvkveetekgllisyidrspealerkeklekke 108
                  T+++ + +F+k+++k++ ++v++ ++ ++i  +drs++a e  e l +++
  KOO25046.1 305 KTSYKQVGKFIKHMHKQKWCNVRDVKNIITILSVDRSSAAYEAFELLGTSA 355
                 599*********************************999988766554444 PP

>> PUA  PUA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.7   0.2   5.1e-06     0.023      16      73 ..     117     179 ..     111     180 .. 0.83

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 5.1e-06
                 T-EEEGGGEEEEETT-.....-TTSEEEEEETTSCEEEEEEESS-HHHHHHHC.TSEEEEEEEE CS
         PUA  16 gasLlapGvvevegdf.....eegdvVaivdedgelvavGlanysseelakik.ggksveierv 73 
                 ga+ + pGv+  +g +      ++ ++++    + + avG++++ss+e+ak   +gk+  + +v
  KOO25046.1 117 GADMMLPGVIVPDGGLgkfaaGQKRCIRVEGN-DAPFAVGKMLVSSDEVAKTGmKGKGMAVLHV 179
                 99***********9998887666777777655.*****************98777777766665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (788 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       657  (0.0366445); expected 358.6 (0.02)
Passed bias filter:                      499  (0.027832); expected 358.6 (0.02)
Passed Vit filter:                        59  (0.00329076); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.65u 0.29s 00:00:00.94 Elapsed: 00:00:00.42
# Mc/sec: 5684.18
//
Query:       KOO25047.1  [L=151]
Description: thioredoxin f [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.5e-19   69.9   0.0      2e-19   69.5   0.0    1.1  1  Thioredoxin    Thioredoxin
     0.0006   20.1   0.0     0.0014   18.9   0.0    1.7  2  Thioredoxin_8  Thioredoxin-like
     0.0026   17.5   0.0     0.0033   17.2   0.0    1.2  1  Thioredoxin_9  Thioredoxin
     0.0048   16.8   0.0     0.0057   16.6   0.0    1.2  1  AhpC-TSA       AhpC/TSA family
     0.0051   16.5   0.0     0.0074   16.0   0.0    1.4  1  Redoxin        Redoxin
     0.0097   16.4   0.0      0.054   13.9   0.0    2.0  1  Thioredoxin_2  Thioredoxin-like domain
  ------ inclusion threshold ------
       0.17   12.1   0.0        1.8    8.8   0.0    2.2  2  Glutaredoxin   Glutaredoxin


Domain annotation for each model (and alignments):
>> Thioredoxin  Thioredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.5   0.0   7.7e-23     2e-19       5     102 ..      49     148 ..      45     149 .. 0.87

  Alignments for each domain:
  == domain 1  score: 69.5 bits;  conditional E-value: 7.7e-23
                  SSHHHHHHHHTT.TSSEEEEEEE-TTSHHHHCHHHHHHHHHHHCTTTSEEEEEETTTS...HHHHHHTT-SSSSEEEEEETTEEEEEEESS-HHHHHH CS
  Thioredoxin   5 ltkenFeeevak.ekklvlveFyApwCghCkalaPeleklaeelkdkvklakvdvden...edlakkyevegiPtlklfkngkevkkyegarekekla 98 
                   ++e+Fe+++ +    lv+v++  +wCg+Ck +aP++++++e++k  v+++kv  d++   ++l +  +v+++P ++++kn +++++++ga++ ++l+
   KOO25047.1  49 SSTEEFEKALDEaGPALVVVDYSTSWCGPCKIIAPKFDEFSEQYK-SVTFLKVMGDSSpaaDKLMRSQGVRALPSFHFWKNKEQIESISGAKT-QALQ 144
                  57899*****99567899***************************.*******877651115688899************************9.8999 PP

                  HHHH CS
  Thioredoxin  99 aflk 102
                  + ++
   KOO25047.1 145 DAIE 148
                  8876 PP

>> Thioredoxin_8  Thioredoxin-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.0       2.1   5.3e+03      39      52 ..      42      56 ..      27      61 .. 0.58
   2 !   18.9   0.0   5.5e-07    0.0014       3      45 ..      65     104 ..      62     135 .. 0.85

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 2.1
                   EEEE-S.S-HHHHHH CS
  Thioredoxin_8 39 vyvsld.kkeeefek 52
                   v+v +d ++ eefek
     KOO25047.1 42 VAVVVDiSSTEEFEK 56
                   333333223344444 PP

  == domain 2  score: 18.9 bits;  conditional E-value: 5.5e-07
                    EEEEEE--SSSHHHHHHHHHHHHHHHHHHHTTSEEEEEEE-SS CS
  Thioredoxin_8   3 vvlLyfgaswcppckaftpklkelyeklkkkkkveivyvsldk 45 
                    +v++ +++swc pck + pk +e++e++k    v ++ v  d+
     KOO25047.1  65 LVVVDYSTSWCGPCKIIAPKFDEFSEQYK---SVTFLKVMGDS 104
                    699*************************8...77777776665 PP

>> Thioredoxin_9  Thioredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   0.0   1.3e-06    0.0033      26     109 ..      48     131 ..      33     150 .. 0.81

  Alignments for each domain:
  == domain 1  score: 17.2 bits;  conditional E-value: 1.3e-06
                    HHHH---HHHHHT--S-EEEEEE--TT-HHHHHHHHHHHHHHHH-TTEEEEEE-HHHHHHHTTTTTT-SS--SSEEEEE-TT-- CS
  Thioredoxin_9  26 velseeteekiksiekklkilvltedwCgDaavnvPvlakiaelnpnievkillrdenlelmdqyltngaraiPtliildeege 109
                    ++ +ee e+++ +   +l ++   + wCg + ++ P +++++e+ + +++  ++ d+ +   +  +++g ra P + + +++ +
     KOO25047.1  48 ISSTEEFEKALDEAGPALVVVDYSTSWCGPCKIIAPKFDEFSEQYKSVTFLKVMGDSSPAADKLMRSQGVRALPSFHFWKNKEQ 131
                    5556666666666666666666789**********************************99999999********998877644 PP

>> AhpC-TSA  AhpC/TSA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   0.0   2.2e-06    0.0057      24      81 ..      61     116 ..      46     145 .. 0.85

  Alignments for each domain:
  == domain 1  score: 16.6 bits;  conditional E-value: 2.2e-06
                 TTSEEEEEEESTST-CCHHHHHHHHHHCHHHCCCTTEEEEEEESSSCHHHHHHHHH-H CS
    AhpC-TSA  24 kgkpvvlffypkdwcpvCttelpalaklyeefkergvevigvsvdspeshkkfiekes 81 
                 +g  +v++ y++ wc +C+  +p++ +  e++k   v+ + v  ds  +  k ++ ++
  KOO25047.1  61 AGPALVVVDYSTSWCGPCKIIAPKFDEFSEQYK--SVTFLKVMGDSSPAADKLMRSQG 116
                 5667899999***********************..78999999999888877777665 PP

>> Redoxin  Redoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.0   2.9e-06    0.0074      27      75 ..      61     107 ..      45     148 .. 0.80

  Alignments for each domain:
  == domain 1  score: 16.0 bits;  conditional E-value: 2.9e-06
                 TTSEEEEEEESTTT-HHHHHTHHHHHTHHHHHHCSTTTEEEEEESSSHH CS
     Redoxin  27 kgkkvvvnfvpgafcPtCsaehpyleklaellkekgvdvvavvadndaf 75 
                 +g  +vv+ + + +c++C+  +p++++++e++k+   +++ v+ d+++ 
  KOO25047.1  61 AGPALVVVDYSTSWCGPCKIIAPKFDEFSEQYKSV--TFLKVMGDSSPA 107
                 677789999**********************8764..444455555555 PP

>> Thioredoxin_2  Thioredoxin-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.9   0.0   2.1e-05     0.054       8     102 ..      66     141 ..      57     147 .. 0.75

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 2.1e-05
  Thioredoxin_2   8 vlvvftdpdCpyCkklkkelkel.ddvtvrvllfplkpsfepkavaiwcakekkkafkdieenvelarkygvrgtPtivfldgkeivarlpGyvpa 102
                    v+v++++++C+ Ck +  +++e  +++++              + ++ ++ +++          +l+r+ gvr++P++ f   ke ++ + G+ ++
     KOO25047.1  66 VVVDYSTSWCGPCKIIAPKFDEFsEQYKS------------VTFLKVMGDSSPA--------ADKLMRSQGVRALPSFHFWKNKEQIESISGAKTQ 141
                    678888***********999999322222............3555666666664........4579***********9999999777888888655 PP

>> Glutaredoxin  Glutaredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.7   0.0      0.25   6.4e+02      26      43 ..      43      60 ..      28      65 .. 0.78
   2 ?    8.8   0.0   0.00071       1.8       2      51 ..      68     121 ..      67     123 .. 0.81

  Alignments for each domain:
  == domain 1  score: 0.7 bits;  conditional E-value: 0.25
                  EEEEEGCCSHHHHHHHHH CS
  Glutaredoxin 26 feeidvdkdeeireelke 43
                    ++d++  ee+ ++l e
    KOO25047.1 43 AVVVDISSTEEFEKALDE 60
                  579999999999999876 PP

  == domain 2  score: 8.8 bits;  conditional E-value: 0.00071
                   EEEESTSSHHHHHHHHHHHHTT...GGEEEEEGCCSH.HHHHHHHHHHTSSSSS CS
  Glutaredoxin   2 vlftkptCpyCkkakrlLkelg...vkfeeidvdkde.eireelkelsgvrtvP 51 
                   v +++++C+ Ck +   ++e+     ++++  v+ d+  + ++l++  gvr++P
    KOO25047.1  68 VDYSTSWCGPCKIIAPKFDEFSeqyKSVTFLKVMGDSsPAADKLMRSQGVRALP 121
                   569***************999955455777788888678999998888999888 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (151 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       466  (0.0259914); expected 358.6 (0.02)
Passed bias filter:                      433  (0.0241508); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.38u 0.26s 00:00:00.64 Elapsed: 00:00:00.39
# Mc/sec: 1161.28
//
Query:       KOO25048.1  [L=179]
Description: hypothetical protein Ctob_005394 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      1e-07   32.1   8.4    1.2e-07   31.8   8.4    1.1  1  COPI_assoc  COPI associated protein
     0.0021   18.3   3.9     0.0041   17.4   3.8    1.6  1  Cg6151-P    Uncharacterized conserved protein CG6151-P


Domain annotation for each model (and alignments):
>> COPI_assoc  COPI associated protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.8   8.4   1.4e-11   1.2e-07       3     102 ..      22     141 ..      20     161 .. 0.86

  Alignments for each domain:
  == domain 1  score: 31.8 bits;  conditional E-value: 1.4e-11
  COPI_assoc   3 afrilnlvvgglaillgisqliil...fsnflsfilsiYiillgivlillEfrvpfe........iykyfsfmfsylGRGlfyillgllvsygg..... 85 
                 ++++l+l++g+++i++g+   i+       f  f+ siY++++g++++ +E++  ++        i +y +f++   G+G+fy+ +gllv++       
  KOO25048.1  22 LLKVLSLFAGAFLIFAGVWGSIFTlilGGGFVYFVGSIYAVIFGLIVLTVEIKDKTKsiskfyrwIDAYLKFLTLQRGKGAFYLGVGLLVCFMTptgtg 120
                 6899*************9655444445599************************99999********************************99666688 PP

  COPI_assoc  86 ....vlsilialllflvGLvy 102
                      ++ ++a++l +vG+v+
  KOO25048.1 121 vgpfGVNNVAAIILAIVGFVH 141
                 997666779999999999886 PP

>> Cg6151-P  Uncharacterized conserved protein CG6151-P
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.4   3.8   4.6e-07    0.0041       3      85 ..      28     115 ..      26     142 .. 0.78

  Alignments for each domain:
  == domain 1  score: 17.4 bits;  conditional E-value: 4.6e-07
    Cg6151-P   3 ilsiilcialGian.iftl....svvlivfsilalvsgfvvlfiEvPlllr.icptsskfdefiekfetnwmraalYlvmavvqwlsli 85 
                 ++++ + i++G++  iftl     +v +v si+a+++g++vl +E+    + i ++ + +d+  + ++    ++a+Yl+++++  ++++
  KOO25048.1  28 LFAGAFLIFAGVWGsIFTLilggGFVYFVGSIYAVIFGLIVLTVEIKDKTKsISKFYRWIDAYLKFLTLQRGKGAFYLGVGLLV-CFMT 115
                 67888999*****99887755557899*******************876661557788888888888888899********999.4444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (179 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       735  (0.040995); expected 358.6 (0.02)
Passed bias filter:                      372  (0.0207485); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.44u 0.27s 00:00:00.71 Elapsed: 00:00:00.43
# Mc/sec: 1260.54
//
Query:       KOO25049.1  [L=431]
Description: hypothetical protein Ctob_005397 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (431 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2335  (0.130236); expected 358.6 (0.02)
Passed bias filter:                      387  (0.0215851); expected 358.6 (0.02)
Passed Vit filter:                        73  (0.00407162); expected 17.9 (0.001)
Passed Fwd filter:                        24  (0.00133861); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.91u 0.35s 00:00:01.26 Elapsed: 00:00:00.52
# Mc/sec: 2505.59
//
Query:       KOO25050.1  [L=578]
Description: hypothetical protein Ctob_005396 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (578 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      3152  (0.175805); expected 358.6 (0.02)
Passed bias filter:                      505  (0.0281667); expected 358.6 (0.02)
Passed Vit filter:                       139  (0.0077528); expected 17.9 (0.001)
Passed Fwd filter:                        41  (0.0022868); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 1.66u 0.44s 00:00:02.10 Elapsed: 00:00:00.62
# Mc/sec: 2813.61
//
Query:       KOO25051.1  [L=1262]
Description: isoform i [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
   1.1e-191  638.5   0.0   1.5e-191  638.1   0.0    1.1  1  Myosin_head  Myosin head (motor domain)
  ------ inclusion threshold ------
       0.44   10.9   0.0       0.44   10.9   0.0    3.2  3  AAA_16       AAA ATPase domain


Domain annotation for each model (and alignments):
>> Myosin_head  Myosin head (motor domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  638.1   0.0  1.7e-195  1.5e-191       2     677 .]      67     786 ..      66     786 .. 0.93

  Alignments for each domain:
  == domain 1  score: 638.1 bits;  conditional E-value: 1.7e-195
                  SBGCGSSS-SHHHHHHHHHHHHHTT--EEEETTEEEEE--SS--S.TSSHHHHHHHTTS-GGGSSSSHHHHHHHHHHHHHHHTSEEEEEEESSTTSSH CS
  Myosin_head   2 edlveLsllneasvlenlkkRykkdliYtysglvlvavnPykklk.iysedvikaykgkkreelpPHifaiadeayrslledkenqsilisGEsGAGK 98 
                  +d ++L +ln a+++en + R++kd+iYty++++l+a+nP+k ++ +yse+  + y+g + ++l+PH +aia++ ++s++ ++++qs+l+sGEsGAGK
   KOO25051.1  67 KDHCNLDVLNSATLVENARARFQKDKIYTYISQLLLAINPFKYIEeLYSEQAKEVYRGANWTQLEPHTYAIAEMSFQSMTIHNQSQSLLVSGESGAGK 164
                  6999****************************************99**************************************************** PP

                  HHHHHHHHHHHHHHSSSSSC.....TCTTHHHHHHHHHHHHHHHHHEEEESSETTEESSEEEEEEEEETTSSEEEEEEEEECE-GGGGT---.TT--S CS
  Myosin_head  99 teatKkvlqylasvaeskek.....veeeeleekilqsnPilEafGnAktvrndnssRFGKfieiefdakgkiagakietYLLEksRvvkqa.keERn 190
                  te+ K+++ y+   a+  +      +++++l+++i+++nP+lEafGnAk +rn+nssRFGK+i+++f+++ +++ga+++t+LLEksRv + + ++ER+
   KOO25051.1 165 TETNKQLMDYIIWRAGVPAGsalaaSNKASLDKRIMDTNPVLEAFGNAKSIRNNNSSRFGKYINLKFSKEWRVMGAEVRTFLLEKSRVTNASlARERS 262
                  ***********876665444456668999***********************************************************9865389*** PP

                  BHHHHHHHHCSTHHHHHHTT--..TCCGSTTTTTTSSSSBTTS-HHHHHHHHHHHHHHHT--HHHHHHHHHHHHHHHHHCTSSEEEECTTSSEEESSH CS
  Myosin_head 191 yHiFYqllagaseeekkelkle..dvkdyaylsqsgeltvdgiddseefketkkaldilglseeeqkeifrivaailhlGniefkkeakdeqavlede 286
                  yHiFYqll g++ + k   +l+   + d+ y+s sg+  vd+idd+e+f+e ++a+   gl++ee++e+++++ a+lh+ n++++ + +d+  +++  
   KOO25051.1 263 YHIFYQLLRGSQFDGKGCAQLKgkGPLDFMYTSLSGTNWVDAIDDVEDFHEFHRAMPNCGLNDEEHQEVYNVLGALLHISNVKYEAAGNDTIRIQPGA 360
                  ***********9999988777765899*************************************************************9998877665 PP

                  HH.HHHHHHHHTS-HHHHHHHHHSEEEEET..TEEEEEE-BHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSS-S-SEEEEEEEEE-B---SSB- CS
  Myosin_head 287 ek.lekaaellgvdaeelekalvkrriktg..kevvskalnveqaevardalakaiyerlFdwlverinkslekkkeekksfiGvLDiaGFEifekns 381
                  ++ l++a +llg+    + + lv++ +k+   ++ ++ al++  a   rdal k++y+ lF  +v++in+++++++ + + fiG+LD++GFE+f++ns
   KOO25051.1 361 SAdLKTAERLLGITP--IGQLLVEKVVKSPrsNNEYHIALDMGAAISQRDALVKHLYQMLFALIVQKINTQIQVER-DFHRFIGLLDVFGFEVFQTNS 455
                  544999999999965..78999999999975567899999**********************************99.99******************* PP

                  HHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHTTSSGCGS-GGGCCHHHHHHHHSSSTSHHHHHHHHHTSTTS-HHHHHHHHHHHHTTSTTEEETTS.. CS
  Myosin_head 382 FEqlcinyvnEkLqqlFnelvlklEqeeYvrEgiewkfidfgldnqaiidLiekkplGilslLdeecllpkatdetfleklvkafskhakfeksrl.. 477
                  FEqlciny+nE+L ++F + v+  E e Y   ++++  +++  dn ++i+L+ek+p+Gi+ +Ld +c++pkatd+tf + ++k++++h++f+  +   
   KOO25051.1 456 FEQLCINYANERLHNFFLMRVFEVEIELYRMQNLQVPVLTY-PDNSKVIELLEKSPTGIFPVLDAQCKTPKATDKTFNAAICKQHASHQHFSTLSGsk 552
                  *****************************************.7************************************************8764445 PP

                  .....TTTTTEEEEEETTCEEEEE-TTHHHHHH----HHHHHHHHTSSSHHHHHHCCSHCH................................B--.. CS
  Myosin_head 478 .....kkgeakFiikHyAgkveYevegfleKnkDtlnedlvellksskkkllaelfkeeek................................eakae 538
                         +e+ F+i+H+Ag+v+Y+ ++fleKn D+l+++ + +l +s++++++++ + ++                                 ++++ 
   KOO25051.1 553 mkmsgVSDEDVFVIHHFAGDVCYSSASFLEKNTDSLSAQFEGILLKSTSSVVVQMVEGAKLgpkapdnpgdqsargkkglepgqmsargeagaMSHRG 650
                  57777788999***********************************************9989************************999887433333 PP

                  .......CSSSECCCCCSBHHHHHHHHHHHHHHHHCTSEEEEEEEE-SSSS--TT---HHHHHHHHHHTTHHHHHHHHHHSSSEEEEHHHHHHHHGGG CS
  Myosin_head 539 akksekkkkkkkkkkkfktvgskfkeslaeLmktlestnphfvRCikpnekkkakkldeslvleqlrclGvlegirirraGfpnRitfeefvqrYkll 636
                  +k  +  k++ + kk   +v+++f   l++Lm+++++t+p f+RCikpn+k  +k++  s+vl+q++ +G++e ++++++G+p+R  ++++++r+k  
   KOO25051.1 651 KKPGKGGKEEGDGKKASGSVSKTFLLGLKQLMREIATTHPFFIRCIKPNQKLVPKEFHVSMVLSQMERSGTIECVKLMQQGYPSRAPYADLMTRFKNA 748
                  3333334444445567789******************************************************************************* PP

                  STTSS-SS.SSSHHHHHHHHHHHTTS-GCGEEECSSEEEET CS
  Myosin_head 637 akkelkkllkedakkaveailkeleldkeeykiGktKiFfr 677
                  +++ +++l   +  ++ve +l + + d+++y++G+  +Ffr
   KOO25051.1 749 LPEFMMTL---NPGQFVELLLLACNCDQNDYQLGQDMVFFR 786
                  ***98555...899**************************8 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   4.9e-05      0.44      20      48 ..     147     175 ..     136     215 .. 0.83
   2 ?   -3.4   0.0       1.3   1.1e+04     107     138 ..     662     692 ..     614     695 .. 0.68
   3 ?  -12.4  17.0         2   1.8e+04      65      94 ..     918     946 ..     842    1015 .. 0.53

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 4.9e-05
      AAA_16  20 rsgrpelvllsGesGvGKsslvrellral 48 
                   ++++++l+sGesG GK+   ++l++++
  KOO25051.1 147 IHNQSQSLLVSGESGAGKTETNKQLMDYI 175
                 556779*************9888888765 PP

  == domain 2  score: -3.4 bits;  conditional E-value: 1.3
      AAA_16 107 avpelagaeasrllellkrllallsrderplv 138
                 ++++++g+ ++ +l  lk+l++ +++  +p+ 
  KOO25051.1 662 DGKKASGSVSKTFLLGLKQLMREIAT-THPFF 692
                 44455555557788888888866666.56655 PP

  == domain 3  score: -12.4 bits;  conditional E-value: 2
      AAA_16  65 saipysalaqalareellrqlldeaesael 94 
                  a++ +a+a+a++r e lr +++++++ ++
  KOO25051.1 918 LAAEAAAVAEAAER-ERLRIEAERLAEEAR 946
                 11222334455533.333433333222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1262 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1860  (0.103743); expected 358.6 (0.02)
Passed bias filter:                      547  (0.0305092); expected 358.6 (0.02)
Passed Vit filter:                        93  (0.00518713); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 1.13u 0.30s 00:00:01.43 Elapsed: 00:00:00.49
# Mc/sec: 7690.16
//
Query:       KOO25052.1  [L=264]
Description: assembly ATPase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.8e-18   67.3   0.0    2.3e-18   67.0   0.0    1.1  1  ABC_tran        ABC transporter
    2.1e-06   27.3   0.1      0.042   13.3   0.0    2.1  2  SMC_N           RecF/RecN/SMC N terminal domain
    0.00026   20.9   0.1      0.012   15.5   0.1    2.1  2  AAA_21          AAA domain, putative AbiEii toxin, Type IV TA
    0.00082   19.1   0.1     0.0019   17.9   0.0    1.6  2  AAA_29          P-loop containing region of AAA domain
  ------ inclusion threshold ------
       0.03   14.6   0.1        1.5    9.1   0.0    2.4  3  AAA_22          AAA domain
      0.032   13.8   0.0      0.063   12.9   0.0    1.4  1  AAA_25          AAA domain
      0.035   14.3   0.0      0.055   13.6   0.0    1.3  1  AAA_33          AAA domain
      0.035   14.0   0.0      0.064   13.2   0.0    1.4  1  RsgA_GTPase     RsgA GTPase
      0.049   14.1   0.0      0.085   13.4   0.0    1.3  1  AAA_23          AAA domain
      0.062   11.9   0.0      0.082   11.5   0.0    1.1  1  AAA_13          AAA domain
      0.082   12.6   0.0       0.14   11.9   0.0    1.3  1  Cytidylate_kin  Cytidylate kinase
      0.083   13.4   0.0       0.18   12.4   0.0    1.6  1  AAA_18          AAA domain


Domain annotation for each model (and alignments):
>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.0   0.0   1.6e-21   2.3e-18       1     135 [.      25     181 ..      25     183 .. 0.87

  Alignments for each domain:
  == domain 1  score: 67.0 bits;  conditional E-value: 1.6e-21
                 EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--..SEEEEEET.TCEGGG.B-HHHCCHCEEEE-SS--S-TTSBHHHH................ CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxx.xxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxx................ RF
    ABC_tran   1 lknvslklkegekvaivGenGaGKStLlkllagllkp..teGeilld.gkdlke.qeleslrkeigvlpqepqlfpeltvren................ 79 
                 lk v+l +++ge++ai+G+nG+GKStL k+l g+ +   t G  +++ ++dl e +++e++++ i   +q p   p++++ +                 
  KOO25052.1  25 LKGVDLIVRRGEVHAIMGPNGSGKSTLSKVLVGHPSYevTGGCARYRnDEDLLElEPEERAQQGIFLAFQYPVEIPGVSNNDFlrlavnkrrgalglde 123
                 7899*****************************9776669999999977888889***********************88888*998766666665543 PP

                 HHHTC....HHHHHHHSTTGGTTCBGESTTS.GGS-HHHHHHHHHHHHHHHTSSEEEEEST CS
                 xxxxx....xxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  80 esdee....iekalsklglkelkdtvvkssp.ssLSgGqkqrvalarallkkpkllllDEp 135
                 +   +    +  + +k++++ +  + ++++  s +SgG+k+r ++ ++ l +p+l +lDE 
  KOO25052.1 124 Y---DplefLGVLSEKMEMVSMSPDFLGRDVnSGFSGGEKKRNEILQMALLEPELAILDET 181
                 2...1556677777889999999999988888****************************6 PP

>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.3   0.0   2.8e-05     0.042      25      41 ..      36      52 ..      28      58 .. 0.86
   2 !   12.2   0.0   5.8e-05     0.087     137     204 ..     155     219 ..     103     234 .. 0.81

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 2.8e-05
                SEEEEEESTTSSHHHHH CS
                xxxxxxxxxxxxxxxxx RF
       SMC_N 25 sftaivGpNGSGKsnll 41
                ++ ai+GpNGSGKs l 
  KOO25052.1 36 EVHAIMGPNGSGKSTLS 52
                5789**********986 PP

  == domain 2  score: 12.2 bits;  conditional E-value: 5.8e-05
                 S-HHHHHHHHHHHHHHHHCCS--SEEEECTTTTTS-HHHHHHHHHHHH.HHCTTSEEEEE-SSHHHCCC CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxx RF
       SMC_N 137 LSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvkkvaellk.eksknaQfivislreemlek 204
                 +SgGek+   + L +A+ +  p  l +lDe d+ LD    k va  ++  +s++  +i i++ +++l  
  KOO25052.1 155 FSGGEKKRNEI-LQMALLE--P-ELAILDETDSGLDIDALKTVAAGVNaCRSEKNAMILITHYQRLLDY 219
                 67888775443.4444443..3.3889********************9445667889999999988765 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.1   7.7e-06     0.012       2      21 ..      38      57 ..      37     110 .. 0.83
   2 ?    3.9   0.0     0.026        38     235     303 .]     153     218 ..      77     218 .. 0.75

  Alignments for each domain:
  == domain 1  score: 15.5 bits;  conditional E-value: 7.7e-06
      AAA_21  2 nvliGpNgsGKSnLLdaldl 21
                 ++ GpNgsGKS+L + l +
  KOO25052.1 38 HAIMGPNGSGKSTLSKVLVG 57
                5799***********99965 PP

  == domain 2  score: 3.9 bits;  conditional E-value: 0.026
      AAA_21 235 relSdGtkrllalltallralkkgsllliDEpEngLHPkllrrllellkelsrngaQviltTHSpllld 303
                 + +S G k+   +l + l  +    l ++DE ++gL+  +l++++  ++++++++   il TH   lld
  KOO25052.1 153 SGFSGGEKKRNEILQMALLEP---ELAILDETDSGLDIDALKTVAAGVNACRSEKNAMILITHYQRLLD 218
                 555555555533333334333...899*****************9999999999999999999877775 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.9   0.0   1.3e-06    0.0019      19      38 ..      32      51 ..      23      61 .. 0.81
   2 ?   -3.4   0.0       5.6   8.4e+03      39      48 ..     187     196 ..     187     201 .. 0.79

  Alignments for each domain:
  == domain 1  score: 17.9 bits;  conditional E-value: 1.3e-06
      AAA_29 19 idlkg.atlltGpsGsGKSTl 38
                ++ +g ++ ++Gp+GsGKSTl
  KOO25052.1 32 VR-RGeVHAIMGPNGSGKSTL 51
                44.45599************8 PP

  == domain 2  score: -3.4 bits;  conditional E-value: 5.6
      AAA_29  39 lDAiqalLvp 48 
                 +DA++++  +
  KOO25052.1 187 IDALKTVAAG 196
                 7999999765 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.1   0.0   0.00097       1.5       7      25 ..      37      55 ..      32      85 .. 0.87
   2 ?   -2.9   0.0       5.2   7.8e+03      86     104 ..     111     128 ..     105     143 .. 0.63
   3 ?    2.9   0.0      0.08   1.2e+02      91     131 ..     170     213 ..     156     220 .. 0.77

  Alignments for each domain:
  == domain 1  score: 9.1 bits;  conditional E-value: 0.00097
      AAA_22  7 ilvvtGesGtGKTtllrrl 25
                + +++G+ G+GK+tl + l
  KOO25052.1 37 VHAIMGPNGSGKSTLSKVL 55
                5689**********98866 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 5.2
      AAA_22  86 lraravielliiDEaqhlr 104
                 + ++++ ++l +DE + l 
  KOO25052.1 111 AVNKRR-GALGLDEYDPLE 128
                 445555.789999999884 PP

  == domain 3  score: 2.9 bits;  conditional E-value: 0.08
      AAA_22  91 v..ielliiDEaqh.lrseealeeLrsllnl.srkgvqliLvGtp 131
                    +el i+DE +  l   +al+++   +n  ++ + ++iL+ ++
  KOO25052.1 170 LlePELAILDETDSgL-DIDALKTVAAGVNAcRSEKNAMILITHY 213
                 2467899*********.9*****9999999987777777777665 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   4.2e-05     0.063      26      50 ..      28      52 ..       5      65 .. 0.81

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 4.2e-05
      AAA_25 26 vkgllpagelallaGapgtGKttla 50
                v+ ++++ge+++++G+ g+GK+tl 
  KOO25052.1 28 VDLIVRRGEVHAIMGPNGSGKSTLS 52
                566789*****************96 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.0   3.7e-05     0.055       3      26 ..      39      62 ..      37      94 .. 0.85

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 3.7e-05
      AAA_33  3 llvGlpGsGKstlaerllkklgav 26
                 + G++GsGKstl++ l+ +  ++
  KOO25052.1 39 AIMGPNGSGKSTLSKVLVGHPSYE 62
                678************999777655 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.0   4.3e-05     0.064      98     127 ..      34      63 ..      15      71 .. 0.86

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 4.3e-05
                  TTSEEEEECSTTSSHHHHHHHHCTT----- CS
  RsgA_GTPase  98 kdktsvlvGqSGvGKStLinallpelelkt 127
                  ++++ +++G+ G GKStL ++l+++ + ++
   KOO25052.1  34 RGEVHAIMGPNGSGKSTLSKVLVGHPSYEV 63 
                  45899*****************99866655 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.0   5.7e-05     0.085      22      35 ..      38      51 ..      28      56 .. 0.88

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 5.7e-05
      AAA_23 22 tlItGpNGaGKTTi 35
                 +I GpNG+GK+T+
  KOO25052.1 38 HAIMGPNGSGKSTL 51
                68***********8 PP

>> AAA_13  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   5.5e-05     0.082      20      38 ..      39      57 ..      34      87 .. 0.85

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 5.5e-05
      AAA_13 20 liYGwNGaGKTtLSrllrs 38
                 i G NG+GK+tLS++l  
  KOO25052.1 39 AIMGPNGSGKSTLSKVLVG 57
                588************9965 PP

>> Cytidylate_kin  Cytidylate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   9.1e-05      0.14       2      34 ..      39      71 ..      38      74 .. 0.88

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 9.1e-05
                    EEE-STTSSHHHHHHHHHHHHT-EEEEHHHHHH CS
  Cytidylate_kin  2 aiDGPagsGKssvaralaeklglkyldtgalYR 34
                    ai GP gsGKs++++ l  + ++++    a YR
      KOO25052.1 39 AIMGPNGSGKSTLSKVLVGHPSYEVTGGCARYR 71
                    799**************9999988888888787 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   0.00012      0.18       3      21 ..      40      58 ..      39      88 .. 0.78

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 0.00012
      AAA_18  3 ltGtpGvGKttlakeLskr 21
                ++G+ G+GK+tl+k L  +
  KOO25052.1 40 IMGPNGSGKSTLSKVLVGH 58
                89************99655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (264 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       396  (0.0220871); expected 358.6 (0.02)
Passed bias filter:                      393  (0.0219198); expected 358.6 (0.02)
Passed Vit filter:                        92  (0.00513135); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.46u 0.27s 00:00:00.73 Elapsed: 00:00:00.41
# Mc/sec: 1940.30
//
Query:       KOO25053.1  [L=395]
Description: morn repeat protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.3e-42  141.2  49.6    9.5e-06   25.2   0.2    8.9  9  MORN      MORN repeat
  ------ inclusion threshold ------
        2.1    8.3   3.6         16    5.4   0.1    3.0  3  DUF448    Protein of unknown function (DUF448)


Domain annotation for each model (and alignments):
>> MORN  MORN repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.4   0.0   0.00011      0.99       7      23 .]     150     166 ..     147     166 .. 0.89
   2 !   24.5   1.4   1.7e-09   1.5e-05       1      21 [.     167     187 ..     167     189 .. 0.96
   3 !   24.2   0.3   2.3e-09     2e-05       1      22 [.     190     211 ..     190     212 .. 0.97
   4 !   24.5   2.1   1.7e-09   1.6e-05       1      22 [.     213     234 ..     213     235 .. 0.98
   5 !   24.1   0.3   2.5e-09   2.2e-05       1      22 [.     236     257 ..     236     258 .. 0.95
   6 !   14.9   0.4     2e-06     0.018       1      22 [.     259     280 ..     259     281 .. 0.94
   7 !   24.5   2.7   1.8e-09   1.6e-05       1      19 [.     282     300 ..     282     304 .. 0.92
   8 !   25.2   0.2   1.1e-09   9.5e-06       1      22 [.     305     326 ..     305     327 .. 0.98
   9 ?   -2.0   0.0      0.47   4.2e+03      12      20 ..     339     347 ..     330     349 .. 0.81

  Alignments for each domain:
  == domain 1  score: 9.4 bits;  conditional E-value: 0.00011
        MORN   7 nGkrhGkGvytwpdGdr 23 
                 +G  +GkG+ t+++Gd+
  KOO25053.1 150 DGTAEGKGTATYANGDV 166
                 67789**********96 PP

  == domain 2  score: 24.5 bits;  conditional E-value: 1.7e-09
        MORN   1 YeGeWknGkrhGkGvytwpdG 21 
                 YeGeWkn++r+G+G + + +G
  KOO25053.1 167 YEGEWKNDRREGQGSCKCTSG 187
                 ******************999 PP

  == domain 3  score: 24.2 bits;  conditional E-value: 2.3e-09
        MORN   1 YeGeWknGkrhGkGvytwpdGd 22 
                 YeG+Wk +kr+G+Gv ++ +Gd
  KOO25053.1 190 YEGTWKADKRDGHGVARYVSGD 211
                 *********************9 PP

  == domain 4  score: 24.5 bits;  conditional E-value: 1.7e-09
        MORN   1 YeGeWknGkrhGkGvytwpdGd 22 
                 YeG+W+ Gkr+GkG+ t+++Gd
  KOO25053.1 213 YEGDWRFGKREGKGRATYASGD 234
                 *********************8 PP

  == domain 5  score: 24.1 bits;  conditional E-value: 2.5e-09
        MORN   1 YeGeWknGkrhGkGvytwpdGd 22 
                 YeGeW+ +k++G+G+++ ++G 
  KOO25053.1 236 YEGEWVADKKQGFGTFWSASGE 257
                 *******************995 PP

  == domain 6  score: 14.9 bits;  conditional E-value: 2e-06
        MORN   1 YeGeWknGkrhGkGvytwpdGd 22 
                 YeG+W  G  +G G+y +++ d
  KOO25053.1 259 YEGQWLTGTYEGRGTYLYASSD 280
                 *******************977 PP

  == domain 7  score: 24.5 bits;  conditional E-value: 1.8e-09
        MORN   1 YeGeWknGkrhGkGvytwp 19 
                 YeGe++nGkr+G+Gvy ++
  KOO25053.1 282 YEGEYHNGKRDGHGVYMYA 300
                 ****************998 PP

  == domain 8  score: 25.2 bits;  conditional E-value: 1.1e-09
        MORN   1 YeGeWknGkrhGkGvytwpdGd 22 
                 YeGe+k+G+++G G+y+ +dG+
  KOO25053.1 305 YEGEYKQGRMEGRGIYRLADGT 326
                 *********************8 PP

  == domain 9  score: -2.0 bits;  conditional E-value: 0.47
        MORN  12 GkGvytwpd 20 
                 G Gv + +d
  KOO25053.1 339 GEGVRWSAD 347
                 999998887 PP

>> DUF448  Protein of unknown function (DUF448)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.4   0.1    0.0018        16      31      49 ..     265     283 ..     258     289 .. 0.88
   2 ?   -1.3   0.1      0.23   2.1e+03      31      42 ..     288     299 ..     285     307 .. 0.83
   3 ?    2.0   0.2     0.021   1.9e+02      31      41 ..     311     321 ..     307     327 .. 0.84

  Alignments for each domain:
  == domain 1  score: 5.4 bits;  conditional E-value: 0.0018
      DUF448  31 tgklpGRGaYvcpseecle 49 
                 tg ++GRG Y+ +s+++ e
  KOO25053.1 265 TGTYEGRGTYLYASSDVYE 283
                 899********99988765 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 0.23
      DUF448  31 tgklpGRGaYvc 42 
                 +gk  G G+Y  
  KOO25053.1 288 NGKRDGHGVYMY 299
                 7999*****975 PP

  == domain 3  score: 2.0 bits;  conditional E-value: 0.021
      DUF448  31 tgklpGRGaYv 41 
                 +g+++GRG+Y 
  KOO25053.1 311 QGRMEGRGIYR 321
                 799*******5 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (395 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       448  (0.0249875); expected 358.6 (0.02)
Passed bias filter:                      307  (0.0171231); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.45u 0.22s 00:00:00.67 Elapsed: 00:00:00.38
# Mc/sec: 3089.77
//
Query:       KOO25054.1  [L=394]
Description: 3-ketoacyl- mitochondrial [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      2e-75  253.5   2.2      2e-75  253.5   2.2    1.8  2  Thiolase_N  Thiolase, N-terminal domain
    2.6e-47  159.5   1.7    2.6e-47  159.5   1.7    2.0  2  Thiolase_C  Thiolase, C-terminal domain
  ------ inclusion threshold ------
      0.042   14.1   0.0       0.18   12.1   0.0    2.0  1  Dodecin     Dodecin


Domain annotation for each model (and alignments):
>> Thiolase_N  Thiolase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  253.5   2.2   3.4e-79     2e-75       1     259 [.       4     263 ..       4     264 .. 0.97
   2 ?   -0.5   0.1      0.11   6.4e+02      17      97 ..     308     392 ..     295     394 .] 0.51

  Alignments for each domain:
  == domain 1  score: 253.5 bits;  conditional E-value: 3.4e-79
                 EEEEEEEEE--EETTSTTTTS-HHHHHHHHHHHHHHHHTS-GGGCCEEEEEHSSCTTSTSC.HHHHHHHHTTS-TTSEEEEEEHGGGHHHHHHHHHHHH CS
  Thiolase_N   1 vvivsaartpigkfggslkdlsaeeLlaealkallekagvdpeevdevivGnvlqagegqn.iarqaalkagipeevpavtvnkvcsSglkavalaaqs 98 
                 v+iv+a rt++g fgg+lk++sa++L+ +a +++l++ +++pe vd v+vGnv q+  +++ +ar++alk g+  +v a  +n++c+Sg+++ +++a +
  KOO25054.1   4 VFIVGARRTAFGAFGGALKSMSATDLAVIATRGALASGKISPEIVDTVVVGNVQQTSPDAAyLARHVALKNGMRVPVSALNINRLCGSGFQSCINVAHE 102
                 79******************************************************888888************************************* PP

                 HHTTSHSEEEEEEEEESTTS-EEE.TCTTTTGGSSSSEEEEEHHHHHHTEETTTTSEHHHHHHHHHHHHT--HHHHHHHHHHHHHHHHHHHHTTTTTTT CS
  Thiolase_N  99 iaageadvvvagGvEsmsnaptae.stdvrsglklgdekakdllipdgladafneehmGltaenlakkykisReeqdefAvkshqkaaaaqkagkFkde 196
                 i+ gea v va G+Esms+ap+++   +vr+g++lg +   + +++ gl+d + ++ mG+taenla++y i+R e d++A++s+q++a+a+++g F++e
  KOO25054.1 103 IKLGEAAVGVAAGTESMSQAPMSVyGHEVRWGTRLGVNAQMQDTLWAGLTDSHAGCPMGITAENLAADYSITRAESDAYALSSQQRWADANAKGVFAHE 201
                 *********************986257899******999888889****************************************************** PP

                 BE-EEEEESSSEEEE-S-TTS-TT--HHHHHTS-BSSSTTSS-BTTSB--BEEEEEEEEEEEH CS
  Thiolase_N 197 ivPvkvkgkkgkktvdkdeairsevtaekLaklkpaFkkeGtvtAgnasqisDGaaavllmse 259
                 i P+++++kkg   + +de++r  +t+ek+ +l + Fkk G vtA+ as+i DGa+a++l+se
  KOO25054.1 202 IEPIELTSKKGPISFATDEHPRV-TTLEKMGALPTTFKKGGVVTAASASGICDGAGALVLASE 263
                 ***********************.*************************************98 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 0.11
                 TTTTS-HHHHHHHHHHHHHHHHT...S-GGGCCEEEEEHSSCTTSTSCHHH.HHHHHTTS-TTSEEEEEEHGGGHHHHHHHHHHH CS
  Thiolase_N  17 slkdlsaeeLlaealkallekag...vdpeevdevivGnvlqagegqniar.qaalkagipeevpavtvnkvcsSglkavalaaq 97 
                 sl+d+   e+ ++++ ++l+ a+   +d+++++    +  l    g+  +r  ++l+  i++  + ++v  +c+ g +++al+ +
  KOO25054.1 308 SLEDMDRIEINEAFAPQVLACAKglgIDASKLNINGGAIALGHPLGASGSRiTLHLAHAIARGEVKTAVGAACIGGGQGIALVLK 392
                 4555555555555555555555444455555543322222333445553331334445566666777788888888888877665 PP

>> Thiolase_C  Thiolase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.0       0.4   2.4e+03      84     108 ..      90     114 ..      65     125 .. 0.79
   2 !  159.5   1.7   4.4e-51   2.6e-47       1     122 [.     271     392 ..     271     393 .. 0.99

  Alignments for each domain:
  == domain 1  score: -1.8 bits;  conditional E-value: 0.4
                 THHHHHHHHHHHHHHHCTTSEEEEE CS
  Thiolase_C  84 asGaRivvtllselkkeggklgvaa 108
                  sG   ++++++e+k  ++ +gvaa
  KOO25054.1  90 GSGFQSCINVAHEIKLGEAAVGVAA 114
                 4777777888888888888888876 PP

  == domain 2  score: 159.5 bits;  conditional E-value: 4.4e-51
                 ---SEEEEEEEEEE--GGGGGGHHHHHHHHHHHHHT--GGGESEEEE--SBHHHHHHHHHHHT--GGGBSTT--HHHH-B-TTTHHHHHHHHHHHHHHH CS
  Thiolase_C   1 lkplakirsyaevgvdpeilglgPayaikkvlkkagltvedidlfEinEAFaaqaLavakaldldlekvNvnGGaialGHPlGasGaRivvtllselkk 99 
                 lkpla+++s+a+vgvdp+ +g+gP++ai+++lkka +++ed+d +EinEAFa q+La+ak l++d++k+N+nGGaialGHPlGasG+Ri+ +l++++ +
  KOO25054.1 271 LKPLAELVSWANVGVDPTRMGIGPVPAIQEALKKASMSLEDMDRIEINEAFAPQVLACAKGLGIDASKLNINGGAIALGHPLGASGSRITLHLAHAIAR 369
                 589************************************************************************************************ PP

                 CTTSEEEEEEEETTTEEEEEEEE CS
  Thiolase_C 100 eggklgvaalCigggqgvalvie 122
                  + k++v a+Cigggqg+alv++
  KOO25054.1 370 GEVKTAVGAACIGGGQGIALVLK 392
                 ********************997 PP

>> Dodecin  Dodecin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0     3e-05      0.18      18      40 ..     297     319 ..     295     322 .. 0.95

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 3e-05
                 HHHHHHHHHHHH-SSEEEEEEEE CS
     Dodecin  18 AiqnAiaeAsktlrnirwveVke 40 
                 Aiq+A+++As +l++++ +e++e
  KOO25054.1 297 AIQEALKKASMSLEDMDRIEINE 319
                 9********************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (394 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       392  (0.021864); expected 358.6 (0.02)
Passed bias filter:                      313  (0.0174578); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.48u 0.25s 00:00:00.73 Elapsed: 00:00:00.42
# Mc/sec: 2844.23
//
Query:       KOO25055.1  [L=247]
Description: leucine-rich repeat-containing protein 61 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.3e-14   54.1   8.0    7.7e-09   35.7   0.4    3.2  3  LRR_4     Leucine Rich repeats (2 copies)
    1.4e-12   47.4   0.0    1.9e-12   47.0   0.0    1.2  1  LRR_9     Leucine-rich repeat
    1.8e-09   37.2   5.7    1.7e-06   27.7   1.5    2.5  2  LRR_8     Leucine rich repeat
    9.5e-05   22.2   2.2       0.54   10.4   0.0    3.8  3  LRR_6     Leucine Rich repeat
  ------ inclusion threshold ------
      0.012   16.1   4.2          2    9.3   0.2    3.9  3  LRR_1     Leucine Rich Repeat
      0.043   14.5   0.0        5.2    7.9   0.0    2.7  2  LRR_2     Leucine Rich Repeat


Domain annotation for each model (and alignments):
>> LRR_4  Leucine Rich repeats (2 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.7   0.4   2.6e-12   7.7e-09       1      42 [.      46      86 ..      46      88 .. 0.93
   2 !   29.1   2.0     3e-10     9e-07       2      41 ..      69     107 ..      68     123 .. 0.93
   3 ?   -0.7   0.0      0.72   2.1e+03      21      29 ..     146     154 ..     142     163 .. 0.84

  Alignments for each domain:
  == domain 1  score: 35.7 bits;  conditional E-value: 2.6e-12
                SS--EEE--SS---E-S-HHH-TT--EEE-.-S-----GGGG CS
       LRR_4  1 pnLevLdLsnNqltdiplleklpnLkeLdLsgNnlitdldeL 42
                p+L++LdLs+N+l  i++l +l +Lk+L L +Nn i ++++L
  KOO25055.1 46 PSLTELDLSGNRLERIEGLHGLESLKKLVL-SNNEIARIEGL 86
                79****************************.66699999988 PP

  == domain 2  score: 29.1 bits;  conditional E-value: 3e-10
                 S--EEE--SS---E-S-HHH-TT--EEE-.-S-----GGG CS
       LRR_4   2 nLevLdLsnNqltdiplleklpnLkeLdLsgNnlitdlde 41 
                 +L++L LsnN +  i++le l+ L++L L gN +i++ld+
  KOO25055.1  69 SLKKLVLSNNEIARIEGLEMLDALETLQLQGN-RISNLDD 107
                 7****************************888.9988876 PP

  == domain 3  score: -0.7 bits;  conditional E-value: 0.72
                 H-TT--EEE CS
       LRR_4  21 klpnLkeLd 29 
                  lp L++Ld
  KOO25055.1 146 MLPRLQTLD 154
                 589999997 PP

>> LRR_9  Leucine-rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.0   0.0   6.3e-16   1.9e-12      45     154 ..      49     162 ..      16     173 .. 0.89

  Alignments for each domain:
  == domain 1  score: 47.0 bits;  conditional E-value: 6.3e-16
       LRR_9  45 dtidlsdndirkldgfPllkrlktlllnnnrivriaegleevlPnleelvltnnelqeladldPlaslkklellsll......knpvtnkkeyrlyviy 137
                   +dls n + +++g+  l+ lk l+l+nn i ri egl e+l  le+l l++n++ +l d++ l+ l+ l+ + l       +np+++++ yr+ v  
  KOO25055.1  49 TELDLSGNRLERIEGLHGLESLKKLVLSNNEIARI-EGL-EMLDALETLQLQGNRISNLDDVQCLTALSCLRQFQLQvrggeeRNPICEHPAYRTAVRR 145
                 5689******************************9.577.699*****************************999854444447*************** PP

       LRR_9 138 klkqlrlldfrkvklke 154
                  l++l+ ld +++ l++
  KOO25055.1 146 MLPRLQTLDGERIVLAD 162
                 *********99997766 PP

>> LRR_8  Leucine rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.7   1.5   5.7e-10   1.7e-06      24      61 .]      45      80 ..      40      80 .. 0.94
   2 !   10.1   0.2   0.00018      0.53      24      51 ..      89     114 ..      83     123 .. 0.59

  Alignments for each domain:
  == domain 1  score: 27.7 bits;  conditional E-value: 5.7e-10
                -TT--EEE--SS---GGGGGGGTT--S-.EEE--SS-- CS
       LRR_8 24 lsnLkvLdLsnNllttlspgafsgLpsLrsLdLsgNrL 61
                +++L++LdLs N+l++++   ++gL+sL++L Ls+N +
  KOO25055.1 45 VPSLTELDLSGNRLERIE--GLHGLESLKKLVLSNNEI 80
                589**************6..****************87 PP

  == domain 2  score: 10.1 bits;  conditional E-value: 0.00018
                 -TT--EEE--SS---GGGGGGGTT--S- CS
       LRR_8  24 lsnLkvLdLsnNllttlspgafsgLpsL 51 
                 l +L++L+L  N+++ l+    ++L++L
  KOO25055.1  89 LDALETLQLQGNRISNLD--DVQCLTAL 114
                 566777777777777764..33333333 PP

>> LRR_6  Leucine Rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.4   0.0   0.00018      0.54       3      15 ..      46      58 ..      46      59 .. 0.89
   2 ?    4.2   0.0     0.018        54       4      15 ..      69      80 ..      66      81 .. 0.90
   3 ?    4.8   0.1     0.012        36       5      17 ..      92     104 ..      92     105 .. 0.92

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00018
       LRR_6  3 thLteLdLsgNdI 15
                ++LteLdLsgN +
  KOO25055.1 46 PSLTELDLSGNRL 58
                58*********86 PP

  == domain 2  score: 4.2 bits;  conditional E-value: 0.018
       LRR_6  4 hLteLdLsgNdI 15
                +L++L Ls N+I
  KOO25055.1 69 SLKKLVLSNNEI 80
                8*********98 PP

  == domain 3  score: 4.8 bits;  conditional E-value: 0.012
       LRR_6   5 LteLdLsgNdIgD 17 
                 L++L+L+gN I++
  KOO25055.1  92 LETLQLQGNRISN 104
                 89*********86 PP

>> LRR_1  Leucine Rich Repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3   0.2   0.00066         2       1      15 [.      47      61 ..      47      67 .. 0.84
   2 ?    3.7   0.0     0.045   1.3e+02       1      12 [.      69      80 ..      69      90 .. 0.82
   3 ?    1.9   0.1      0.17   5.1e+02       2      14 ..      92     104 ..      91     125 .. 0.79

  Alignments for each domain:
  == domain 1  score: 9.3 bits;  conditional E-value: 0.00066
       LRR_1  1 nLrhLdLsnnpllgl 15
                +L++LdLs+n+l+++
  KOO25055.1 47 SLTELDLSGNRLERI 61
                69*********9765 PP

  == domain 2  score: 3.7 bits;  conditional E-value: 0.045
       LRR_1  1 nLrhLdLsnnpl 12
                +L++L Lsnn +
  KOO25055.1 69 SLKKLVLSNNEI 80
                69********97 PP

  == domain 3  score: 1.9 bits;  conditional E-value: 0.17
       LRR_1   2 LrhLdLsnnpllg 14 
                 L++L L +n++++
  KOO25055.1  92 LETLQLQGNRISN 104
                 99*******9843 PP

>> LRR_2  Leucine Rich Repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.9   0.0    0.0017       5.2       1      21 [.      69      89 ..      69      89 .. 0.95
   2 ?    3.7   0.0     0.037   1.1e+02       1      15 [.      91     105 ..      91     112 .. 0.84

  Alignments for each domain:
  == domain 1  score: 7.9 bits;  conditional E-value: 0.0017
       LRR_2  1 sLKtLhLdsVrfsdedslekL 21
                sLK L+L++++++  ++le+L
  KOO25055.1 69 SLKKLVLSNNEIARIEGLEML 89
                8***********999999998 PP

  == domain 2  score: 3.7 bits;  conditional E-value: 0.037
       LRR_2   1 sLKtLhLdsVrfsde 15 
                 +L tL L  +r+s+ 
  KOO25055.1  91 ALETLQLQGNRISNL 105
                 699*********774 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (247 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       311  (0.0173462); expected 358.6 (0.02)
Passed bias filter:                      282  (0.0157287); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.43u 0.26s 00:00:00.69 Elapsed: 00:00:00.42
# Mc/sec: 1772.27
//
Query:       KOO25056.1  [L=302]
Description: hypothetical protein Ctob_006941 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.3e-06   27.3   4.4    8.7e-05   22.1   1.3    2.2  2  NnrU      NnrU protein


Domain annotation for each model (and alignments):
>> NnrU  NnrU protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.2   0.1   0.00036       6.5      18      65 ..      62     111 ..      48     153 .. 0.71
   2 !   22.1   1.3   4.9e-09   8.7e-05     105     181 ..     184     278 ..     170     298 .. 0.80

  Alignments for each domain:
  == domain 1  score: 6.2 bits;  conditional E-value: 0.00036
        NnrU  18 apalRarliarlG.ergykilyslvsllglvlliigfgaarye.vllWep 65 
                 ++  R+ li  lG e++y +ly  vs+++ v l +g++   +  ++l  +
  KOO25056.1  62 LSHNRSSLIDYLGdEERYHMLYNGVSTVACVSLGFGYFYRLHSaLPLRPV 111
                 677899******94579**********99998888776443332444444 PP

  == domain 2  score: 22.1 bits;  conditional E-value: 4.9e-09
        NnrU 105 tgivritrHPmllgvaiWAlaHllanGdlasvllfgglllwalvgviaidrrkrrrlgee.wealaartsvvpfaai.................l 181
                 +g+ r+ rHP+l+++a+  l+  la +++ + +   g +l al+g ++id r+rr+lg +  ++ ++ ts +pf+a+                  
  KOO25056.1 184 HGLHRVSRHPLLWSLAFVGLGAALAVPSVPQAVWLCGPALMALLGGAHIDFRHRRQLGGTlTAEEERVTSHLPFVAMasgahaegalgsaralfD 278
                 6999******************************************************9955666777999999998777666666655555441 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (302 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       388  (0.0216409); expected 358.6 (0.02)
Passed bias filter:                      282  (0.0157287); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.21s 00:00:00.64 Elapsed: 00:00:00.37
# Mc/sec: 2457.76
//
Query:       KOO25057.1  [L=365]
Description: hypothetical protein Ctob_006940 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    7.8e-15   54.7   1.2    2.6e-06   27.4   0.4    3.5  2  cNMP_binding  Cyclic nucleotide-binding domain


Domain annotation for each model (and alignments):
>> cNMP_binding  Cyclic nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.2   0.0     6e-09   0.00011       5      81 ..     109     190 ..     105     198 .. 0.76
   2 !   27.4   0.4   1.4e-10   2.6e-06       9      86 ..     248     339 ..     240     340 .. 0.85

  Alignments for each domain:
  == domain 1  score: 22.2 bits;  conditional E-value: 6e-09
                   -TT-EEE-TTSB-SEEEEEEES-EEEEEEETTS.EEEEEEE......-TTEE.ESHHHHHHTS--SSEEEESSTEEEEEEEHHH CS
  cNMP_binding   5 kagevifrqGdpadslyivlsGevrvyrlsedgkevvlavl......gpGdl.fGelalltgeprtatvvAltdsellalprdd 81 
                   ++ +vi+r+G p   +y++++G+v  + + +  + vv +v       g+G + +G  al++ + r+ t++Al++ el++++ ++
    KOO25057.1 109 QRYDVIYREGAPSHAFYVLTRGSVLES-VVGKPDPVVHDVRnsgpsgGRGYVlLGMEALFG-QARASTLEALENIELIKFSTAN 190
                   6779*******************7654.333333445554466777788877468878877.****************998776 PP

  == domain 2  score: 27.4 bits;  conditional E-value: 1.4e-10
                   EEE-TTSB-SEEEEEEES-EEEEEEETTS.EEEEEEE.................-TT.EEESHHHHHHTS--SSEEEESSTEEEEEEEHHHHHHHH CS
  cNMP_binding   9 vifrqGdpadslyivlsGevrvyrlsedgkevvlavl.................gpG.dlfGelalltgeprtatvvAltdsellalprddflell 86 
                    if  G p+d++yi+  G+v++  +++dg  +v+a+l                 g G  +fGe+a+++ ++r a +v+ t ++ll+lp ++f + +
    KOO25057.1 248 KIFDYGMPGDKVYILFHGSVSM--RKRDG--TVFATLvaeqgqsagkgsadqgvGVGlPVFGEMAMIDRSTRMAAAVTATATKLLVLPVEQFAACM 339
                   69999*****************..99999..57777778889989888887755555578*******99***********************8765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (365 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       595  (0.0331865); expected 358.6 (0.02)
Passed bias filter:                      442  (0.0246528); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.24s 00:00:00.70 Elapsed: 00:00:00.37
# Mc/sec: 2928.69
//
Query:       KOO25058.1  [L=151]
Description: hypothetical protein Ctob_006943 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.4e-06   27.4   0.0    3.5e-06   26.8   0.0    1.2  1  Mito_carr  Mitochondrial carrier protein


Domain annotation for each model (and alignments):
>> Mito_carr  Mitochondrial carrier protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.8   0.0     2e-10   3.5e-06       6      60 ..      61     115 ..      58     118 .. 0.81

  Alignments for each domain:
  == domain 1  score: 26.8 bits;  conditional E-value: 2e-10
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSTTTSCSSHHHHHHHHHHHHH CS
   Mito_carr   6 lkellaGglagavatlvttPldvvKtrlqtqkksskksksaaildvlkkiykeeG 60 
                 l+++laG+lagava+ +ttP+dv+ t + t ++ ++    ++ ++    +++e+G
  KOO25058.1  61 LSDVLAGVLAGAVAAALTTPMDVIVTHVATTAHDGSGPPGRHPFQRGMDLIREQG 115
                 6789*************************99888877666666666666666666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (151 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       478  (0.0266607); expected 358.6 (0.02)
Passed bias filter:                      354  (0.0197445); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.34u 0.25s 00:00:00.59 Elapsed: 00:00:00.37
# Mc/sec: 1231.46
//
Query:       KOO25059.1  [L=209]
Description: meiotic nuclear division protein 1-like protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.7e-15   55.6   0.0    8.9e-15   54.7   0.0    1.5  1  Mnd1       Mnd1 HTH domain
    6.5e-08   32.6   0.1    6.5e-08   32.6   0.1    2.4  3  LZ3wCH     Leucine zipper with capping helix domain
  ------ inclusion threshold ------
      0.068   13.5   0.4      0.068   13.5   0.4    1.9  2  E2F_CC-MB  E2F transcription factor CC-MB domain
       0.58   10.2   4.5        1.2    9.2   0.3    3.2  3  RHH_1      Ribbon-helix-helix protein, copG family


Domain annotation for each model (and alignments):
>> Mnd1  Mnd1 HTH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.7   0.0     2e-18   8.9e-15       1      60 []      14      72 ..      14      72 .. 0.98

  Alignments for each domain:
  == domain 1  score: 54.7 bits;  conditional E-value: 2e-18
        Mnd1  1 ileifqeskefytlKeleklapkekgivsqsVkdvlqsLvdDglveveKiGssnvyWsFp 60
                ++++fq++  ++t Ke+eklap+ +givs  V+ vl +L++D++v++ K   + +yWsFp
  KOO25059.1 14 MIDMFQAESAVFTKKEVEKLAPR-TGIVSGAVEAVLRELINDDIVHEGKLSGTLFYWSFP 72
                7899*******************.***********************************8 PP

>> LZ3wCH  Leucine zipper with capping helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.1      0.79   3.6e+03       3      10 ..     109     116 ..     107     132 .. 0.62
   2 ?   -3.7   0.6       3.1   1.4e+04       7      14 ..     145     152 ..     140     154 .. 0.48
   3 !   32.6   0.1   1.4e-11   6.5e-08       5      36 ..     160     190 ..     156     207 .. 0.83

  Alignments for each domain:
  == domain 1  score: -1.8 bits;  conditional E-value: 0.79
      LZ3wCH   3 ieekkkat 10 
                 ie+++ka+
  KOO25059.1 109 IEQMRKAA 116
                 66666665 PP

  == domain 2  score: -3.7 bits;  conditional E-value: 3.1
      LZ3wCH   7 kkatkkak 14 
                 ++++k+ k
  KOO25059.1 145 ENIEKEKK 152
                 44444333 PP

  == domain 3  score: 32.6 bits;  conditional E-value: 1.4e-11
      LZ3wCH   5 ekkkatkkakeaanrWtdnifdikswikekfp 36 
                 ++k++ k++keaanrWtdn f+iks   e ++
  KOO25059.1 160 ARKRDLKVLKEAANRWTDNLFMIKSKLVE-SG 190
                 799**********************8887.44 PP

>> E2F_CC-MB  E2F transcription factor CC-MB domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.1      0.79   3.5e+03       3      21 ..      81      99 ..      80     115 .. 0.71
   2 ?   13.5   0.4   1.5e-05     0.068       3      60 ..     121     183 ..     119     187 .. 0.84

  Alignments for each domain:
  == domain 1  score: -1.6 bits;  conditional E-value: 0.79
   E2F_CC-MB  3 qelesleeeeqkLDeliek 21
                +el+s +++  +L+++ ++
  KOO25059.1 81 AELASFQAKAGQLEQQARS 99
                6888888888888888765 PP

  == domain 2  score: 13.5 bits;  conditional E-value: 1.5e-05
   E2F_CC-MB   3 qelesleeeeqkLDelieklteqlknl.tedekn.qlaYvtyedirsiasfke...qtviaik 60 
                 +e ++l+e+e  L ++++  te  +n+ +e++k+ q+++ ++ d++ +++ ++   + +++ik
  KOO25059.1 121 SEAAELNEQEGLLTSIMAAETEARENIeKEKKKSgQNMHARKRDLKVLKEAANrwtDNLFMIK 183
                 6889***********************666666667***********9988875556777777 PP

>> RHH_1  Ribbon-helix-helix protein, copG family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.6   0.0      0.14   6.1e+02      11      24 ..      27      41 ..      26      54 .. 0.66
   2 ?    9.2   0.3   0.00027       1.2       9      29 ..     104     124 ..     103     126 .. 0.90
   3 ?   -0.9   0.1       0.4   1.8e+03      13      26 ..     146     159 ..     142     160 .. 0.84

  Alignments for each domain:
  == domain 1  score: 0.6 bits;  conditional E-value: 0.14
                HHHHHHHHHHHT.SS CS
       RHH_1 11 lerLdelarrrg.rS 24
                ++++++la r+g +S
  KOO25059.1 27 KKEVEKLAPRTGiVS 41
                678888988888665 PP

  == domain 2  score: 9.2 bits;  conditional E-value: 0.00027
                 HHHHHHHHHHHHHTSSHHHHH CS
       RHH_1   9 ellerLdelarrrgrSrSelI 29 
                 +ll+++++++++ g+S Se+ 
  KOO25059.1 104 SLLAQIEQMRKAAGQSASEAA 124
                 699***************985 PP

  == domain 3  score: -0.9 bits;  conditional E-value: 0.4
                 HHHHHHHHHTSSHH CS
       RHH_1  13 rLdelarrrgrSrS 26 
                  +++ ++++g++++
  KOO25059.1 146 NIEKEKKKSGQNMH 159
                 689999****9987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (209 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1984  (0.110659); expected 358.6 (0.02)
Passed bias filter:                      762  (0.042501); expected 358.6 (0.02)
Passed Vit filter:                        79  (0.00440627); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.44u 0.23s 00:00:00.67 Elapsed: 00:00:00.37
# Mc/sec: 1705.34
//
Query:       KOO25060.1  [L=354]
Description: ATP synthase gamma subunit [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.7e-87  291.8   3.7    7.6e-87  291.6   3.7    1.0  1  ATP-synt  ATP synthase
  ------ inclusion threshold ------
       0.34   11.3   4.3        5.1    7.5   1.1    2.6  2  Ntox1     Putative RNase-like toxin, toxin_1


Domain annotation for each model (and alignments):
>> ATP-synt  ATP synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  291.6   3.7   8.5e-91   7.6e-87       1     278 [.      42     352 ..      42     353 .. 0.91

  Alignments for each domain:
  == domain 1  score: 291.6 bits;  conditional E-value: 8.5e-91
                 THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTHHHHCEHHHHTT..T..SSG.S..SSEEEEEEE--SSSSSTTHHHHHHHHH CS
    ATP-synt   1 slkeikrRiksvkstkkItkAmkmVaaaklrkaqealeaarpyaekleevlealakreee..ekhpllke.eekkvllivitSDrGLcGgfNsnvikka 96 
                 +++++++R+ksvk+tkkIt+Amk+Vaaak+r+aqea+ ++rp++e+le++l  l+kr ++   + pll++ e++k++l+vi++DrGLcGg+N++ ikka
  KOO25060.1  42 NIRALRDRVKSVKNTKKITSAMKLVAAAKVRRAQEAVLRSRPFSETLERILGGLLKRLSTesLDIPLLETrEVNKIGLVVIAGDRGLCGGYNAQAIKKA 140
                 6899************************************************997777665578888888569************************** PP

                 HHHHHHHHTTT.ETEEEEESHHHHHHH.HHSS.EHHTTCE-TSS--HHHHHHHHHHHHSHHHTTSBSEEEEEEEEECCTSEEEEEEEEESS........ CS
    ATP-synt  97 eklieelkkeg.evklvvvGkkgreyf.krkvevqleftgvskkptfeeaseiaeeildlyeegeideveivynkfksaisqeptvekllp........ 185
                 e++i+elk+++ +v+l+++G+k+ +yf kr +++ +++   +++pt ++a+e+a+e+l+ y +ge+d++e++y+kf+s++ ++p v++l+p        
  KOO25060.1 141 EQRIAELKAQNiKVELLTIGNKAGKYFsKRPTPIRKSIPC-TQAPTAKQAQEVANELLSSYYAGELDRIELLYTKFISMVASTPAVRTLVPllpagmem 238
                 98998889999999*************9999999777654.559***********************************************76666555 PP

                 .T...HC........................S..SSTSEESS.HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
    ATP-synt 186 .lekeee........................kkekseyefepdeeevleellpeylasliyrallesaasEqaaRmtaMdnAtknakelidkltleyNr 259
                       +                        ++ +++++fe++++++l+++lp yl+ +++r++ es asE aaRm aM++At+nak+l ++l+ e+Nr
  KOO25060.1 239 eG----DeifkltskdgdiaiqkqkipaaeaAEFSPDMIFEQEPSQLLNAILPLYLNGQLLRTMQESVASELAARMSAMQAATDNAKDLQKRLETEMNR 333
                 50....15555555666777777788988889999999************************************************************* PP

                 HHHHHHHHHHHHHHHHHTT CS
    ATP-synt 260 aRQaaITqELieIvsGaeA 278
                 aRQa+ITqEL+eI++Ga+A
  KOO25060.1 334 ARQAKITQELMEIIAGADA 352
                 *****************98 PP

>> Ntox1  Putative RNase-like toxin, toxin_1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.9   0.1    0.0078        70      44      82 ..      39      78 ..      27      86 .. 0.84
   2 ?    7.5   1.1   0.00057       5.1      53      89 ..     298     337 ..     291     343 .. 0.75

  Alignments for each domain:
  == domain 1  score: 3.9 bits;  conditional E-value: 0.0078
       Ntox1 44 laad.delkeeneevealRkldaklaadeaakLiqaleta 82
                +a +  +l++   +v++ +k+ + ++   aak+ +a e++
  KOO25060.1 39 MASNiRALRDRVKSVKNTKKITSAMKLVAAAKVRRAQEAV 78
                5544358999999********99999999****9999987 PP

  == domain 2  score: 7.5 bits;  conditional E-value: 0.00057
       Ntox1  53 eneeve...alRkldaklaadeaakLiqaletarlnggka 89 
                  +e+v    a R  + + a d+a+ L+++let  + + +a
  KOO25060.1 298 MQESVAselAARMSAMQAATDNAKDLQKRLETEMNRARQA 337
                 455554222679999999*************988887666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (354 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1146  (0.0639188); expected 358.6 (0.02)
Passed bias filter:                      584  (0.0325729); expected 358.6 (0.02)
Passed Vit filter:                        55  (0.00306766); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.48u 0.23s 00:00:00.71 Elapsed: 00:00:00.37
# Mc/sec: 2845.97
//
Query:       KOO25061.1  [L=339]
Description: cell cycle checkpoint protein rad1 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    9.4e-28   97.0   0.0    1.3e-27   96.6   0.0    1.1  1  Rad1      Repair protein Rad1/Rec1/Rad17


Domain annotation for each model (and alignments):
>> Rad1  Repair protein Rad1/Rec1/Rad17
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   96.6   0.0     7e-32   1.3e-27       2     272 ..      14     283 ..      13     285 .. 0.84

  Alignments for each domain:
  == domain 1  score: 96.6 bits;  conditional E-value: 7e-32
        Rad1   2 fsAtlsnvseLatlLksiafkdk.........alvqissdGlkfivednrvlqaqafldka.lFtsYtfenaqddedeedeeedsvsfevsLsallecL 90 
                 f+A+++++++++++L+si+++++         a +++s++Gl+f+v+ +++lqa a+++++ +F +++++ +++     +  +++++f ++L +llecL
  KOO25061.1  14 FEARTDDARRITSILSSICVATSrkadssaslAWCEVSDTGLTFTVNVSKTLQAIAYVKRKgVFHTWELAMPHR----GEVPDERLEFGINLATLLECL 108
                 99*******************9556899******************************96549******55554....667899*************** PP

        Rad1  91 nifgkndssskessssraskvasssakatscklsYkgeGsPLvliLeeagvtttcelsTyepe..edldleld.rqevvlkvilkselLhsalteLd.. 184
                 +ifg++ +++              +  +t + +s+ +    L l L+e+  +t+ce+ ++e++   +++l+    ++  + +++ s+ L++ + eL+  
  KOO25061.1 109 KIFGGAAAPNA------------FERSQTALHISFREGTRCLCLQLNEKASVTECEIHSLEIDqpHKTELKVReGERPPARLVVSSDALKNGIDELEwg 195
                 ********865............345789**********************************55556666553456689****************755 PP

        Rad1 185 ..at.skklkilassekkap...vfalsakgelgssevefpneksvlekfevsslsessessYkfallkkaakalalssKvslrmdeaGlLslq 272
                   a+  k++ + +s++++      ++l+ +++    e+ +p e   l +f v   ++  +  Y+f +++ a ++l+ s  ++l+ de+G+L ++
  KOO25061.1 196 geASrDKRVLLRVSAPSA-SgpgGLSLTVSSTDVGCEMVYPPEA--LVSFDVR--QD-LSFEYRFLHMHMALRSLRDSHQTLLQLDENGTLEIK 283
                 424445566666666644.14578999888777779999*9986..5689999..55.5555*****************************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (339 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       469  (0.0261587); expected 358.6 (0.02)
Passed bias filter:                      416  (0.0232026); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.24s 00:00:00.70 Elapsed: 00:00:00.41
# Mc/sec: 2500.23
//
Query:       KOO25062.1  [L=237]
Description: subfamily member 12, partial [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      6e-20   71.1   0.0    1.1e-19   70.3   0.0    1.5  1  DnaJ      DnaJ domain


Domain annotation for each model (and alignments):
>> DnaJ  DnaJ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.3   0.0   6.1e-24   1.1e-19       1      62 [.      68     128 ..      68     129 .. 0.98

  Alignments for each domain:
  == domain 1  score: 70.3 bits;  conditional E-value: 6.1e-24
                 HHHHHHTSSTTG-HHHHHHHHHHHHHHHSTTTSCCHHHHHHHHHHHHHHHHHHTSHHHHHHH CS
        DnaJ   1 dyYeiLgvskdasedeIkkaYrklalkyHPDknpkdpeaeekFkeineAyevLsdpekRkqY 62 
                 d++e+Lgv+++a+++eIk+a+++l++++HPDkn +  ea e+Fk++neA  +Lsdp++R++Y
  KOO25062.1  68 DLFEVLGVTRTATAAEIKQAFKRLSREVHPDKN-GADEAVEAFKRLNEAQTTLSDPREREKY 128
                 789******************************.9999**********************99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (237 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1140  (0.0635841); expected 358.6 (0.02)
Passed bias filter:                      391  (0.0218082); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.22s 00:00:00.66 Elapsed: 00:00:00.38
# Mc/sec: 1858.06
//
Query:       KOO25063.1  [L=289]
Description: hypothetical protein Ctob_006938 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    5.7e-14   52.1  18.9    6.7e-14   51.9  18.9    1.0  1  TPT             Triose-phosphate Transporter family
    1.8e-05   24.9  35.1    0.00014   22.0  18.5    2.1  2  EamA            EamA-like transporter family
  ------ inclusion threshold ------
        0.2   11.9   0.7       0.98    9.6   0.0    2.3  2  Suppressor_P21  RNA silencing suppressor P21 C-terminal domai


Domain annotation for each model (and alignments):
>> TPT  Triose-phosphate Transporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.9  18.9   1.1e-17   6.7e-14      29     289 ..       3     264 ..       1     265 [. 0.84

  Alignments for each domain:
  == domain 1  score: 51.9 bits;  conditional E-value: 1.1e-17
         TPT  29 pyPltvsavqllvgsvlilvlwal..glkkrpkisse.flkailpla.lvktlghvlavvslskvaVSfthtvKasePiFtvilsrlllgeklsllvyl 123
                 ++P++ s  + +v+ v++++++ l  +    p +++    k +++l  ++ t+   +++++l++++V   + + a++P++t+++ ++l g+ ++  +y 
  KOO25063.1   3 KFPTVYSFYSAIVTDVMLIPMFLLfpKQWGVPALDMFgPPKFVFTLIiIFTTFDMAFTNIALANISVALQQCIAATNPFWTIMIESVLHGKFQHPIIYG 101
                 789999999999999999999988555555788887764444444430566778889****************************************** PP

         TPT 124 sLlpivgGvalasvtEls.FnligfisAlisnltfslrnifsKkllkklkd.ldalnlfaiitilslllllPvallveg.vlktpsllkstkvslkevl 219
                 s+  +v+G +l s+ +++  n++g + A+++ l+++++  f   ++++++  l+al l++ + +l + +++P + +  + vl   +++++t  ++ +++
  KOO25063.1 102 SVTGLVVGAILVSISDIKkLNVTGVLFACAAVLCSASKYAFTHAAFRQYQGkLSALSLLFWVDLLMIPIFIPWVWANGEvVLLLNANMNAT--EWWQFT 198
                 ****************9549****************************5556********************7666555233333333333..566777 PP

         TPT 220 lllllsgvlfhlynqvaymvLervspvthsvantvKrvvvIvlsvlvfknpvsllnaiGtavaivGvflY 289
                  +  l gv       + + vL+ +++ t svant   v+ I +s++   + +++l + G +++i+    Y
  KOO25063.1 199 GTAALGGV----RALTQFFVLSYTTATTMSVANTFALVLNILISLMWQPTAITPLLVGGICMVILTSAFY 264
                 77777776....566779*******************************************999987777 PP

>> EamA  EamA-like transporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.0   8.6   0.00025       1.5      32     136 ..       7     114 ..       3     115 .. 0.78
   2 !   22.0  18.5   2.4e-08   0.00014       2     133 ..     124     262 ..     123     266 .. 0.94

  Alignments for each domain:
  == domain 1  score: 9.0 bits;  conditional E-value: 0.00025
        EamA  32 tltfvrfliagillliiallkegkl..aklslkd.wllllllgllgtvlafllffyalkktsasnaslitslePvftlilsvlllgekltlkqllgivl 127
                  ++f++ ++  ++l+++ ll+ +++  + l+  +  ++++ l ++ t++ + + ++al ++s++    i ++ P +t+++ ++l g+    + + ++  
  KOO25063.1   7 VYSFYSAIVTDVMLIPMFLLFPKQWgvPALDMFGpPKFVFTLIIIFTTFDMAFTNIALANISVALQQCIAATNPFWTIMIESVLHGKFQHPIIYGSVTG 105
                 6788999999999988888887777443333322356778888888888889********************************887777777777777 PP

        EamA 128 illGvllil 136
                  ++G++l++
  KOO25063.1 106 LVVGAILVS 114
                 778888876 PP

  == domain 2  score: 22.0 bits;  conditional E-value: 2.4e-08
        EamA   2 lgillallaalfwaiyfvlskillrkv....spltltfvrfliagillliiallkegkl....aklslkdwllllllgllgtvlafllffyalkktsas 92 
                  g+l+a +a+l++a+ + ++ +++r++    s l+l+f+  l+   +++++ + +++      a+++ ++w  +  +++lg+v a l +f  l++t+a+
  KOO25063.1 124 TGVLFACAAVLCSASKYAFTHAAFRQYqgklSALSLLFWVDLLMIPIFIPWVWANGEVVlllnANMNATEWWQFTGTAALGGVRA-LTQFFVLSYTTAT 221
                 599*********9999999999999998888999**********************99999999999999**************9.9************ PP

        EamA  93 naslitslePvftlilsvlllgekltlkqllgivlillGvl 133
                 + s++++++ v+ +++s  +    +t + + gi++++l  +
  KOO25063.1 222 TMSVANTFALVLNILISLMWQPTAITPLLVGGICMVILTSA 262
                 **********************************9998765 PP

>> Suppressor_P21  RNA silencing suppressor P21 C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   0.0   0.00016      0.98      38      66 ..     107     135 ..     102     145 .. 0.88
   2 ?   -1.2   0.1      0.39   2.3e+03      12      26 ..     210     224 ..     207     235 .. 0.76

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 0.00016
  Suppressor_P21  38 vvktvLqhlSselklevsentFkqnalLr 66 
                     vv + L  +S+ +kl+v+   F++ a+L 
      KOO25063.1 107 VVGAILVSISDIKKLNVTGVLFACAAVLC 135
                     8999**********************994 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 0.39
  Suppressor_P21  12 lkffvreyinitptt 26 
                      +ffv  y+  t  +
      KOO25063.1 210 TQFFVLSYTTATTMS 224
                     689999999988875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (289 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       822  (0.0458475); expected 358.6 (0.02)
Passed bias filter:                      268  (0.0149478); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.44u 0.24s 00:00:00.68 Elapsed: 00:00:00.39
# Mc/sec: 2219.11
//
Query:       KOO25064.1  [L=1778]
Description: antigen ki-67 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      6e-10   39.3   0.0    2.6e-09   37.3   0.0    2.0  2  FHA       FHA domain
    6.4e-05   22.6   0.2    0.00018   21.1   0.2    1.8  1  SAP       SAP domain


Domain annotation for each model (and alignments):
>> FHA  FHA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.3   0.0   2.9e-13   2.6e-09       2      68 ..      32      99 ..      31     100 .. 0.95
   2 ?   -1.3   0.0      0.33   2.9e+03      14      38 ..     825     849 ..     817     850 .. 0.78

  Alignments for each domain:
  == domain 1  score: 37.3 bits;  conditional E-value: 2.9e-13
                EEESS.TTSSEETTSTTSTTTEEEEEEETTCEEEEEEEESSSS..SEEETTEEESTTSEEEE-TTEEEEE CS
         FHA  2 tiGRs.sdcdivlddpsiSrkHalikfdkgsgkvyleDlgSkn..GtfvNgqrigkgepveLksgdviel 68
                 iGR+ ++cdi++  p++S+ +a+++ d+  ++v++e+l  +n  Gt +N++r+   +p+ L+++d+i++
  KOO25064.1 32 LIGRDpEKCDIQIRLPEVSKMQARLTADEY-RQVWIENLSQTNplGTLLNDERCDG-QPHLLANKDIITI 99
                69***888**********************.9********999889********96.***********98 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 0.33
                 TSTTSTTTEEEEEEETTCEEEEEEE CS
         FHA  14 ddpsiSrkHalikfdkgsgkvyleD 38 
                    s+S +Ha  + d++s +v +e+
  KOO25064.1 825 GTFSVSAQHAAAEQDEDSLSVQVEN 849
                 5569******999999987777776 PP

>> SAP  SAP domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.1   0.2   2.1e-08   0.00018       3      25 ..    1571    1593 ..    1569    1594 .. 0.90

  Alignments for each domain:
  == domain 1  score: 21.1 bits;  conditional E-value: 2.1e-08
                  T--HHHHHHHHHHTT--TTS-HH CS
         SAP    3 kltVaeLKeeLkkrGLptsGkKa 25  
                   ++V+eL+e+L+ +GL+tsGk +
  KOO25064.1 1571 AMKVKELREALETLGLDTSGKQE 1593
                  6*******************754 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1778 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       677  (0.0377601); expected 358.6 (0.02)
Passed bias filter:                      267  (0.0148921); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 1.04u 0.31s 00:00:01.35 Elapsed: 00:00:00.47
# Mc/sec: 11254.52
//
Query:       KOO25065.1  [L=1515]
Description: protein nlrc3 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    7.6e-31  103.5  49.9     0.0013   18.6   0.4   13.3 13  LRR_6        Leucine Rich repeat
    4.3e-11   41.5   0.2    2.8e-05   23.3   0.1    2.8  2  EF-hand_1    EF hand
    3.4e-09   36.0   6.0         64    4.7   0.0   10.9 10  LRR_1        Leucine Rich Repeat
    2.8e-08   34.1   0.1      6e-08   33.0   0.1    1.6  1  EF-hand_7    EF-hand domain pair
    1.1e-07   31.2   0.0      0.033   14.1   0.0    2.7  2  EF-hand_6    EF-hand domain
    3.9e-07   30.3  16.0        2.8    8.5   0.0    9.5  9  LRR_4        Leucine Rich repeats (2 copies)
      1e-06   29.0   0.0    2.3e-06   27.8   0.0    1.5  1  PDZ_2        PDZ domain
    3.9e-06   26.6   0.3    1.4e-05   24.8   0.3    2.0  1  PDZ_6        PDZ domain
    1.8e-05   24.0   0.2      0.097   12.2   0.1    2.6  2  EF-hand_5    EF hand
    0.00027   20.6  21.3         14    5.6   0.1   10.2 10  LRR_8        Leucine rich repeat
    0.00098   18.9   0.4     0.0035   17.1   0.4    2.0  2  EF-hand_8    EF-hand domain pair
     0.0042   17.4   0.1     0.0092   16.3   0.1    1.6  1  EF-hand_9    EF-hand domain
     0.0084   16.1   0.5      0.033   14.2   0.2    2.0  2  EF-hand_4    Cytoskeletal-regulatory complex EF hand
  ------ inclusion threshold ------
       0.23   11.7   6.1      0.056   13.6   1.4    2.6  2  Dockerin_1   Dockerin type I domain
        0.3   11.8  11.7         13    6.7   0.1    4.7  4  Parecho_VpG  Parechovirus Genome-linked protein


Domain annotation for each model (and alignments):
>> LRR_6  Leucine Rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.8   0.0     0.062        75       5      24 .]     712     731 ..     710     731 .. 0.94
   2 !   17.2   0.0   3.1e-06    0.0037       1      24 []     738     761 ..     738     761 .. 0.97
   3 !   13.1   0.1   6.2e-05     0.074       1      18 [.     814     831 ..     814     832 .. 0.90
   4 !    6.6   1.7    0.0075         9       1      15 [.     936     950 ..     936     955 .. 0.87
   5 !   18.6   0.4   1.1e-06    0.0013       3      24 .]     979    1000 ..     979    1000 .. 0.95
   6 !   11.4   0.4   0.00022      0.26       2      15 ..    1055    1068 ..    1054    1070 .. 0.89
   7 ?    5.4   0.2     0.019        22       2      24 .]    1090    1112 ..    1089    1112 .. 0.89
   8 ?   -2.4   0.0       5.8   6.9e+03      10      20 ..    1137    1147 ..    1136    1149 .. 0.51
   9 !   18.4   0.0   1.3e-06    0.0016       1      24 []    1161    1184 ..    1161    1184 .. 0.94
  10 !   10.2   0.4   0.00056      0.67       5      24 .]    1253    1272 ..    1249    1272 .. 0.93
  11 !   15.2   0.0   1.3e-05     0.016       4      22 ..    1282    1300 ..    1280    1302 .. 0.90
  12 ?   -2.6   0.2       6.8   8.1e+03       2      13 ..    1357    1368 ..    1356    1371 .. 0.88
  13 !   10.7   0.3   0.00036      0.44       1      16 [.    1470    1485 ..    1470    1488 .. 0.90

  Alignments for each domain:
  == domain 1  score: 3.8 bits;  conditional E-value: 0.062
       LRR_6   5 LteLdLsgNdIgDeGaeaLa 24 
                 Lte +Lsg d+g e ++aLa
  KOO25065.1 712 LTEINLSGSDMGTETVIALA 731
                 9*************999997 PP

  == domain 2  score: 17.2 bits;  conditional E-value: 3.1e-06
       LRR_6   1 snthLteLdLsgNdIgDeGaeaLa 24 
                 snt+L +Ld+sgN +  +Ga+aLa
  KOO25065.1 738 SNTKLAKLDVSGNRLEPAGAKALA 761
                 69*********************8 PP

  == domain 3  score: 13.1 bits;  conditional E-value: 6.2e-05
       LRR_6   1 snthLteLdLsgNdIgDe 18 
                 +n++L++L+Ls+N++ +e
  KOO25065.1 814 TNPTLKSLNLSSNKLAGE 831
                 59************9776 PP

  == domain 4  score: 6.6 bits;  conditional E-value: 0.0075
       LRR_6   1 snthLteLdLsgNdI 15 
                 +n++Lt+L+Ls N +
  KOO25065.1 936 TNSTLTSLNLSTNRL 950
                 59*********9986 PP

  == domain 5  score: 18.6 bits;  conditional E-value: 1.1e-06
       LRR_6    3 thLteLdLsgNdIgDeGaeaLa 24  
                  ++L +LdLs+NdIg  Ga+aLa
  KOO25065.1  979 SNLLKLDLSWNDIGLIGAKALA 1000
                  5899*****************8 PP

  == domain 6  score: 11.4 bits;  conditional E-value: 0.00022
       LRR_6    2 nthLteLdLsgNdI 15  
                  n++Lt+LdLs N++
  KOO25065.1 1055 NRTLTSLDLSKNQL 1068
                  9***********94 PP

  == domain 7  score: 5.4 bits;  conditional E-value: 0.019
       LRR_6    2 nthLteLdLsgNdIgDeGaeaLa 24  
                  n++L  Ld++ NdI+++ a+ La
  KOO25065.1 1090 NSTLAMLDMRNNDINGDAATRLA 1112
                  899999**********9988776 PP

  == domain 8  score: -2.4 bits;  conditional E-value: 5.8
       LRR_6   10 LsgNdIgDeGa 20  
                  ++  d++++G+
  KOO25065.1 1137 VTVLDLSGKGL 1147
                  44445555555 PP

  == domain 9  score: 18.4 bits;  conditional E-value: 1.3e-06
       LRR_6    1 snthLteLdLsgNdIgDeGaeaLa 24  
                  ++++Lt+Ld+++NdI++  a+ La
  KOO25065.1 1161 KCRSLTSLDVRHNDISGTAAKQLA 1184
                  699*****************9997 PP

  == domain 10  score: 10.2 bits;  conditional E-value: 0.00056
       LRR_6    5 LteLdLsgNdIgDeGaeaLa 24  
                  Lt+L L gN + DeG++a++
  KOO25065.1 1253 LTSLLLGGNSLKDEGISAIC 1272
                  99*****************8 PP

  == domain 11  score: 15.2 bits;  conditional E-value: 1.3e-05
       LRR_6    4 hLteLdLsgNdIgDeGaea 22  
                  +L +Ld+sgN Ig eG+++
  KOO25065.1 1282 KLASLDISGNSIGPEGVKK 1300
                  789**************98 PP

  == domain 12  score: -2.6 bits;  conditional E-value: 6.8
       LRR_6    2 nthLteLdLsgN 13  
                  n++L+e ++sgN
  KOO25065.1 1357 NSSLRECNMSGN 1368
                  999999999999 PP

  == domain 13  score: 10.7 bits;  conditional E-value: 0.00036
       LRR_6    1 snthLteLdLsgNdIg 16  
                  +n++Lt LdL++N ++
  KOO25065.1 1470 TNRTLTRLDLTHNRMT 1485
                  59***********875 PP

>> EF-hand_1  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.0   8.4e-06      0.01       2      25 ..     850     873 ..     849     876 .. 0.91
   2 !   23.3   0.1   2.3e-08   2.8e-05       2      28 ..     887     913 ..     886     914 .. 0.93

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 8.4e-06
                 HHHHHHHHTTTSSSEEEHHHHHHH CS
   EF-hand_1   2 lkeiFrefDkDgdGkIdfeEfkel 25 
                 l+ +F+++D+D++Gk+d  E k++
  KOO25065.1 850 LEAAFAKVDVDKSGKMDAAEVKAY 873
                 689*****************9976 PP

  == domain 2  score: 23.3 bits;  conditional E-value: 2.3e-08
                 HHHHHHHHTTTSSSEEEHHHHHHHHHH CS
   EF-hand_1   2 lkeiFrefDkDgdGkIdfeEfkellkk 28 
                 + e+++ +D+++dG +d++Efk ++++
  KOO25065.1 887 VSEMMATADTNNDGEVDLNEFKIIMRA 913
                 579**********************86 PP

>> LRR_1  Leucine Rich Repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.5   0.0       1.3   1.5e+03       1      13 [.     741     753 ..     741     763 .. 0.80
   2 ?    4.7   0.0     0.054        64       2      12 ..     818     828 ..     817     850 .. 0.82
   3 ?    1.5   0.2      0.62   7.4e+02       2      15 ..     940     953 ..     939     959 .. 0.85
   4 ?    4.3   0.0      0.07        83       1      15 [.     980     994 ..     980    1002 .. 0.79
   5 ?    3.7   0.1      0.11   1.3e+02       2      16 ..    1058    1072 ..    1057    1077 .. 0.85
   6 ?    2.8   0.0      0.22   2.6e+02       1      13 [.    1164    1176 ..    1164    1196 .. 0.75
   7 ?    0.2   0.0       1.7     2e+03       2      20 ..    1253    1271 ..    1252    1276 .. 0.80
   8 ?    2.1   0.0      0.38   4.6e+02       1      12 [.    1282    1293 ..    1282    1302 .. 0.83
   9 ?    1.5   0.1       0.6   7.2e+02       1      19 [.    1359    1377 ..    1359    1381 .. 0.82
  10 ?    1.3   0.0      0.68   8.1e+02       2      11 ..    1474    1483 ..    1473    1491 .. 0.87

  Alignments for each domain:
  == domain 1  score: 0.5 bits;  conditional E-value: 1.3
       LRR_1   1 nLrhLdLsnnpll 13 
                 +L +Ld+s+n+l+
  KOO25065.1 741 KLAKLDVSGNRLE 753
                 5779******984 PP

  == domain 2  score: 4.7 bits;  conditional E-value: 0.054
       LRR_1   2 LrhLdLsnnpl 12 
                 L++L+Ls+n l
  KOO25065.1 818 LKSLNLSSNKL 828
                 9********98 PP

  == domain 3  score: 1.5 bits;  conditional E-value: 0.62
       LRR_1   2 LrhLdLsnnpllgl 15 
                 L++L+Ls n+l gl
  KOO25065.1 940 LTSLNLSTNRLCGL 953
                 99*******99655 PP

  == domain 4  score: 4.3 bits;  conditional E-value: 0.07
       LRR_1   1 nLrhLdLsnnpllgl 15 
                 nL +LdLs+n ++ +
  KOO25065.1 980 NLLKLDLSWNDIGLI 994
                 7899*******9544 PP

  == domain 5  score: 3.7 bits;  conditional E-value: 0.11
       LRR_1    2 LrhLdLsnnpllglp 16  
                  L++LdLs n+llg  
  KOO25065.1 1058 LTSLDLSKNQLLGVY 1072
                  99********98765 PP

  == domain 6  score: 2.8 bits;  conditional E-value: 0.22
       LRR_1    1 nLrhLdLsnnpll 13  
                  +L++Ld+++n ++
  KOO25065.1 1164 SLTSLDVRHNDIS 1176
                  69********993 PP

  == domain 7  score: 0.2 bits;  conditional E-value: 1.7
       LRR_1    2 LrhLdLsnnpllglppnsf 20  
                  L++L L++n+l + +++++
  KOO25065.1 1253 LTSLLLGGNSLKDEGISAI 1271
                  899********76666655 PP

  == domain 8  score: 2.1 bits;  conditional E-value: 0.38
       LRR_1    1 nLrhLdLsnnpl 12  
                  +L +Ld+s+n++
  KOO25065.1 1282 KLASLDISGNSI 1293
                  6789******98 PP

  == domain 9  score: 1.5 bits;  conditional E-value: 0.6
       LRR_1    1 nLrhLdLsnnpllglppns 19  
                  +Lr+ ++s+n+ l+ +++ 
  KOO25065.1 1359 SLRECNMSGNSSLDRGSAE 1377
                  69*********98877765 PP

  == domain 10  score: 1.3 bits;  conditional E-value: 0.68
       LRR_1    2 LrhLdLsnnp 11  
                  L++LdL++n+
  KOO25065.1 1474 LTRLDLTHNR 1483
                  99*******7 PP

>> EF-hand_7  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.0   0.1     5e-11     6e-08       4      71 .]     850     912 ..     847     912 .. 0.90

  Alignments for each domain:
  == domain 1  score: 33.0 bits;  conditional E-value: 5e-11
   EF-hand_7   4 lkeaFkelDtdgdgyldkeellrllrkifqgagegsklsdeelellfkefDtdkdGvisfdEFlklyr 71 
                 l+ aF + D+d++g++d +e++ ++         ++ l+d+ + +++   Dt++dG+++++EF+ ++r
  KOO25065.1 850 LEAAFAKVDVDKSGKMDAAEVKAYILT-----VYKNGLDDKVVSEMMATADTNNDGEVDLNEFKIIMR 912
                 6789******************86665.....888888999999********************9996 PP

>> EF-hand_6  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.0   0.0     3e-05     0.036       2      26 ..     850     874 ..     849     881 .. 0.88
   2 !   14.1   0.0   2.7e-05     0.033      10      29 ..     895     913 ..     890     917 .. 0.92

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 3e-05
   EF-hand_6   2 lreaFklfDkdgdGkidaeElrkal 26 
                 l++aF + D+d++Gk da+E+++ +
  KOO25065.1 850 LEAAFAKVDVDKSGKMDAAEVKAYI 874
                 678******************9954 PP

  == domain 2  score: 14.1 bits;  conditional E-value: 2.7e-05
   EF-hand_6  10 DkdgdGkidaeElrkalrka 29 
                 D+++dG++d +E++ ++r a
  KOO25065.1 895 DTNNDGEVDLNEFKIIMR-A 913
                 9****************9.5 PP

>> LRR_4  Leucine Rich repeats (2 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.2   0.0       1.3   1.5e+03      20      33 ..     705     720 ..     685     725 .. 0.63
   2 ?    1.8   0.0      0.29   3.5e+02      21      36 ..     738     752 ..     710     771 .. 0.72
   3 ?    6.1   0.0     0.013        16       7      35 ..     794     827 ..     792     834 .. 0.60
   4 ?    1.5   0.3      0.38   4.5e+02      23      36 ..     938     950 ..     931     958 .. 0.68
   5 ?   -0.1   0.2       1.2   1.4e+03      21      39 ..     977     991 ..     966     995 .. 0.73
   6 ?    4.0   0.1     0.061        73       3      14 ..    1058    1069 ..    1055    1081 .. 0.74
   7 !    8.5   0.0    0.0023       2.8       4      40 ..    1138    1176 ..    1137    1181 .. 0.83
   8 ?    5.7   0.0     0.017        21       2      39 ..    1252    1293 ..    1251    1298 .. 0.77
   9 ?    1.5   0.0      0.36   4.3e+02       3      14 ..    1474    1485 ..    1449    1489 .. 0.73

  Alignments for each domain:
  == domain 1  score: -0.2 bits;  conditional E-value: 1.3
                 H..H-TT--EEE-.-S CS
       LRR_4  20 e..klpnLkeLdLsgN 33 
                 +   l  L+e++Lsg 
  KOO25065.1 705 AipMLRELTEINLSGS 720
                 2445899999999885 PP

  == domain 2  score: 1.8 bits;  conditional E-value: 0.29
                 H-TT--EEE-.-S--- CS
       LRR_4  21 klpnLkeLdLsgNnli 36 
                 ++++L +Ld+sgN ++
  KOO25065.1 738 SNTKLAKLDVSGN-RL 752
                 4888889999888.44 PP

  == domain 3  score: 6.1 bits;  conditional E-value: 0.013
                 E--SS---E-S-HH.....H.-TT--EEE-.-S-- CS
       LRR_4   7 dLsnNqltdiplle.....k.lpnLkeLdLsgNnl 35 
                 dLs   l + + +      + +p Lk+L+Ls+N +
  KOO25065.1 794 DLSRKGLGTASAFViatliGtNPTLKSLNLSSN-K 827
                 555555555555333344444788888888877.3 PP

  == domain 4  score: 1.5 bits;  conditional E-value: 0.38
                 TT--EEE-.-S--- CS
       LRR_4  23 pnLkeLdLsgNnli 36 
                   L++L+Ls N ++
  KOO25065.1 938 STLTSLNLSTN-RL 950
                 45999999777.55 PP

  == domain 5  score: -0.1 bits;  conditional E-value: 1.2
                 H-TT--EEE-.-S-----G CS
       LRR_4  21 klpnLkeLdLsgNnlitdl 39 
                 k+ nL +LdLs N    d+
  KOO25065.1 977 KFSNLLKLDLSWN----DI 991
                 5889999999325....54 PP

  == domain 6  score: 4.0 bits;  conditional E-value: 0.061
                  --EEE--SS--- CS
       LRR_4    3 LevLdLsnNqlt 14  
                  L++LdLs Nql 
  KOO25065.1 1058 LTSLDLSKNQLL 1069
                  788888888764 PP

  == domain 7  score: 8.5 bits;  conditional E-value: 0.0023
                  -EEE--SS---E-S-.....HH.H-TT--EEE-.-S-----GG CS
       LRR_4    4 evLdLsnNqltdipl.....le.klpnLkeLdLsgNnlitdld 40  
                  +vLdLs+  l  ++      l+ k+ +L++Ld+ +N    d++
  KOO25065.1 1138 TVLDLSGKGLMAVEAhvignLAaKCRSLTSLDVRHN----DIS 1176
                  89****999999999876554468*********999....886 PP

  == domain 8  score: 5.7 bits;  conditional E-value: 0.017
                  S--EEE--SS---E-S-...HH...H-TT..--EEE-.-S-----G CS
       LRR_4    2 nLevLdLsnNqltdipl...le...klpn..LkeLdLsgNnlitdl 39  
                   L++L L++N l+d +    +e   +++   L +Ld+sgN    ++
  KOO25065.1 1252 ALTSLLLGGNSLKDEGIsaiCEaiqSNKEskLASLDISGN----SI 1293
                  59************88855522554455578999***999....55 PP

  == domain 9  score: 1.5 bits;  conditional E-value: 0.36
                  --EEE--SS--- CS
       LRR_4    3 LevLdLsnNqlt 14  
                  L+ LdL +N++t
  KOO25065.1 1474 LTRLDLTHNRMT 1485
                  667777777665 PP

>> PDZ_2  PDZ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.8   0.0   1.9e-09   2.3e-06       2      74 ..     579     646 ..     578     649 .. 0.78

  Alignments for each domain:
  == domain 1  score: 27.8 bits;  conditional E-value: 1.9e-09
                 ...XX------..-EEEEEE-TTSGGGGT.--TT-EEEEETTB--SSHHHHHHHHHTS-TT-EEEEEEEETTE CS
       PDZ_2   2 ylGvsvsdeedtggvlvvsVkeggPaakaglkagDvilkvdgkkvksledlislllkkkpGdtVkltvlRdgk 74 
                 +lG++vs+ +     ++v+V+ ++Paa ag+ agD +l+vd+++ k + +  +l   +    + kl+v R+g+
  KOO25065.1 579 KLGARVSNAN-----VIVKVDLESPAAHAGVLAGDLVLAVDDVECKGGLTAPKLWTDGAGRPNRKLRVHRQGE 646
                 6888888888.....599***************************8887776555544444455677777766 PP

>> PDZ_6  PDZ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.8   0.3   1.2e-08   1.4e-05       1      32 [.     589     620 ..     589     624 .. 0.91

  Alignments for each domain:
  == domain 1  score: 24.8 bits;  conditional E-value: 1.2e-08
       PDZ_6   1 vVtaVdpgsPAdrAGlrvGDiilsvNGqpveg 32 
                 v+  Vd +sPA++AG+ +GD++l+v++++++g
  KOO25065.1 589 VIVKVDLESPAAHAGVLAGDLVLAVDDVECKG 620
                 57899***********************9966 PP

>> EF-hand_5  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.2   0.0   0.00073      0.88       1      22 [.     850     871 ..     850     875 .. 0.87
   2 !   12.2   0.1   8.1e-05     0.097       8      22 ..     894     908 ..     889     911 .. 0.88

  Alignments for each domain:
  == domain 1  score: 9.2 bits;  conditional E-value: 0.00073
                 HHHHHHHH-SS-SSCE-HHHHH CS
   EF-hand_5   1 lkdtFqaiDlNgDGkIskeELk 22 
                 l+++F ++D++++Gk ++ E k
  KOO25065.1 850 LEAAFAKVDVDKSGKMDAAEVK 871
                 6789***********9998865 PP

  == domain 2  score: 12.2 bits;  conditional E-value: 8.1e-05
                 H-SS-SSCE-HHHHH CS
   EF-hand_5   8 iDlNgDGkIskeELk 22 
                 +D+N+DG ++  E+k
  KOO25065.1 894 ADTNNDGEVDLNEFK 908
                 8*************8 PP

>> LRR_8  Leucine rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.0       7.6   9.1e+03      48      58 ..     709     719 ..     709     721 .. 0.61
   2 ?    0.9   0.0      0.32   3.8e+02       2      13 ..     741     752 ..     733     776 .. 0.60
   3 ?    5.6   0.1     0.011        14      24      37 ..     815     828 ..     807     830 .. 0.79
   4 ?    3.3   0.1     0.059        70      23      37 ..     936     950 ..     928     957 .. 0.68
   5 ?    2.9   0.1     0.075        90      23      45 ..     977     999 ..     966    1002 .. 0.78
   6 ?    3.1   0.1     0.066        78       2      13 ..    1057    1068 ..    1052    1073 .. 0.57
   7 ?   -0.9   0.0       1.2   1.5e+03      49      61 .]    1091    1103 ..    1076    1105 .. 0.66
   8 ?    3.8   0.0     0.042        50      46      61 .]    1160    1175 ..    1136    1182 .. 0.75
   9 ?    0.3   0.3       0.5     6e+02      25      36 ..    1281    1292 ..    1251    1294 .. 0.59
  10 ?    3.6   0.0     0.047        56      26      38 ..    1473    1485 ..    1467    1494 .. 0.59

  Alignments for each domain:
  == domain 1  score: -3.5 bits;  conditional E-value: 7.6
                 --S-.EEE--S CS
       LRR_8  48 LpsLrsLdLsg 58 
                 L+ L++++Lsg
  KOO25065.1 709 LRELTEINLSG 719
                 55666677665 PP

  == domain 2  score: 0.9 bits;  conditional E-value: 0.32
                 T-SEEE-TTS-- CS
       LRR_8   2 nLtsLdLsnNrl 13 
                 +L +Ld+s Nrl
  KOO25065.1 741 KLAKLDVSGNRL 752
                 334444444443 PP

  == domain 3  score: 5.6 bits;  conditional E-value: 0.011
                 -TT--EEE--SS-- CS
       LRR_8  24 lsnLkvLdLsnNll 37 
                 ++ Lk+L+Ls+N+l
  KOO25065.1 815 NPTLKSLNLSSNKL 828
                 67888999999887 PP

  == domain 4  score: 3.3 bits;  conditional E-value: 0.059
                 T-TT--EEE--SS-- CS
       LRR_8  23 glsnLkvLdLsnNll 37 
                 ++s L++L+Ls N+l
  KOO25065.1 936 TNSTLTSLNLSTNRL 950
                 566777777777766 PP

  == domain 5  score: 2.9 bits;  conditional E-value: 0.075
                 T-TT--EEE--SS---GGGGGGG CS
       LRR_8  23 glsnLkvLdLsnNllttlspgaf 45 
                 ++snL  LdLs N +  + ++a+
  KOO25065.1 977 KFSNLLKLDLSWNDIGLIGAKAL 999
                 37899999999999988877776 PP

  == domain 6  score: 3.1 bits;  conditional E-value: 0.066
                  T-SEEE-TTS-- CS
       LRR_8    2 nLtsLdLsnNrl 13  
                  +LtsLdLs+N+l
  KOO25065.1 1057 TLTSLDLSKNQL 1068
                  455555555554 PP

  == domain 7  score: -0.9 bits;  conditional E-value: 1.2
                  -S-.EEE--SS-- CS
       LRR_8   49 psLrsLdLsgNrL 61  
                  + L +Ld+++N++
  KOO25065.1 1091 STLAMLDMRNNDI 1103
                  4466666666654 PP

  == domain 8  score: 3.8 bits;  conditional E-value: 0.042
                  TT--S-.EEE--SS-- CS
       LRR_8   46 sgLpsLrsLdLsgNrL 61  
                  + ++sL+sLd+++N++
  KOO25065.1 1160 AKCRSLTSLDVRHNDI 1175
                  4567788888888876 PP

  == domain 9  score: 0.3 bits;  conditional E-value: 0.5
                  TT--EEE--SS- CS
       LRR_8   25 snLkvLdLsnNl 36  
                  s+L +Ld+s N+
  KOO25065.1 1281 SKLASLDISGNS 1292
                  344444444444 PP

  == domain 10  score: 3.6 bits;  conditional E-value: 0.047
                  T--EEE--SS--- CS
       LRR_8   26 nLkvLdLsnNllt 38  
                   L+ LdL++N++t
  KOO25065.1 1473 TLTRLDLTHNRMT 1485
                  4555555555544 PP

>> EF-hand_8  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   0.0       7.8   9.3e+03      37      48 ..     519     530 ..     518     532 .. 0.84
   2 !   17.1   0.4     3e-06    0.0035       2      49 ..     862     908 ..     858     912 .. 0.81

  Alignments for each domain:
  == domain 1  score: -3.4 bits;  conditional E-value: 7.8
   EF-hand_8  37 tdgdGkisfeEF 48 
                 + g G +s++E 
  KOO25065.1 519 MVGVGSLSYDEL 530
                 6799******96 PP

  == domain 2  score: 17.1 bits;  conditional E-value: 3e-06
   EF-hand_8   2 kgkItreelrril.rilglkkglseeevdilfrefDtdgdGkisfeEFc 49 
                 +gk++ +e +  + ++   k gl ++ v +++ ++Dt++dG ++++EF 
  KOO25065.1 862 SGKMDAAEVKAYIlTVY--KNGLDDKVVSEMMATADTNNDGEVDLNEFK 908
                 57777777777664543..336**************************7 PP

>> EF-hand_9  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.1   7.7e-06    0.0092       2      63 ..     852     912 ..     851     914 .. 0.95

  Alignments for each domain:
  == domain 1  score: 16.3 bits;  conditional E-value: 7.7e-06
   EF-hand_9   2 tvFevcDtqktGrVpvsrlidyLravtaqdpeeseLeelakelDPdgedasvdldtflrvmr 63 
                 + F   D++k G+   +++++y   v ++   +  + e  + +D ++  ++vdl+ f+ +mr
  KOO25065.1 852 AAFAKVDVDKSGKMDAAEVKAYILTVYKNGLDDKVVSEMMATADTNND-GEVDLNEFKIIMR 912
                 679999**************************************9988.************9 PP

>> EF-hand_4  Cytoskeletal-regulatory complex EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.0       1.2   1.4e+03      41      65 ..     846     870 ..     817     879 .. 0.70
   2 !   14.2   0.2   2.7e-05     0.033      32      70 ..     875     912 ..     860     914 .. 0.86

  Alignments for each domain:
  == domain 1  score: -0.7 bits;  conditional E-value: 1.2
   EF-hand_4  41 eedklekiwdladidedgkldfeef 65 
                 ++  le  +   d+d+ gk+d  e 
  KOO25065.1 846 SDAGLEAAFAKVDVDKSGKMDAAEV 870
                 556788899999********98875 PP

  == domain 2  score: 14.2 bits;  conditional E-value: 2.7e-05
   EF-hand_4  32 apvlknskleedklekiwdladidedgkldfeefciamr 70 
                  +v kn  l+++ ++++   ad ++dg++d++ef i+mr
  KOO25065.1 875 LTVYKN-GLDDKVVSEMMATADTNNDGEVDLNEFKIIMR 912
                 456665.5999***************************9 PP

>> Dockerin_1  Dockerin type I domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   1.4   4.7e-05     0.056       4      53 ..     859     910 ..     856     913 .. 0.83
   2 ?   -3.1   0.2       8.2   9.7e+03      33      42 ..    1097    1106 ..    1085    1108 .. 0.68

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 4.7e-05
                 TTSSSC-SHHHHHHHHHHCT.....SSEBTTSCCCHGGGSTT-SSCESHHHHHHH CS
  Dockerin_1   4 VNgDgkVnalDalliinyln.....qregqssssngkaaDvNgDGrvnalDallv 53 
                 V+++gk   +Da+ ++ y++       +++  s++ ++aD N+DG+v+   + ++
  KOO25065.1 859 VDKSGK---MDAAEVKAYILtvyknGLDDKVVSEMMATADTNNDGEVDLNEFKII 910
                 555554...79************98778999****************97777666 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 8.2
                  CHGGGSTT-S CS
  Dockerin_1   33 ngkaaDvNgD 42  
                  + ++ D+NgD
  KOO25065.1 1097 DMRNNDINGD 1106
                  5566677777 PP

>> Parecho_VpG  Parechovirus Genome-linked protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.9   0.0     0.041        49       7      18 ..     779     790 ..     777     792 .. 0.92
   2 ?    4.5   0.3     0.055        66       7      18 ..    1019    1030 ..    1017    1032 .. 0.92
   3 ?   -0.4   0.1       2.2   2.6e+03       7      18 ..    1321    1332 ..    1320    1333 .. 0.90
   4 ?    6.7   0.1     0.011        13       7      20 .]    1435    1448 ..    1433    1448 .. 0.92

  Alignments for each domain:
  == domain 1  score: 4.9 bits;  conditional E-value: 0.041
  Parecho_VpG   7 LPvAKPKGtFPv 18 
                  LPv K KGt Pv
   KOO25065.1 779 LPVDKLKGTDPV 790
                  9**********9 PP

  == domain 2  score: 4.5 bits;  conditional E-value: 0.055
  Parecho_VpG    7 LPvAKPKGtFPv 18  
                   LPv K KGt Pv
   KOO25065.1 1019 LPVKKLKGTDPV 1030
                   9**********9 PP

  == domain 3  score: -0.4 bits;  conditional E-value: 2.2
  Parecho_VpG    7 LPvAKPKGtFPv 18  
                   LPv K  Gt P+
   KOO25065.1 1321 LPVKKLNGTDPI 1332
                   9********997 PP

  == domain 4  score: 6.7 bits;  conditional E-value: 0.011
  Parecho_VpG    7 LPvAKPKGtFPvsq 20  
                   LPv K KGt Pv q
   KOO25065.1 1435 LPVKKLKGTDPVYQ 1448
                   9***********87 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1515 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       539  (0.030063); expected 358.6 (0.02)
Passed bias filter:                      343  (0.019131); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                        15  (0.000836633); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              15  [number of targets reported over threshold]
# CPU time: 0.85u 0.32s 00:00:01.17 Elapsed: 00:00:00.49
# Mc/sec: 9295.25
//
Query:       KOO25066.1  [L=1386]
Description: hypothetical protein Ctob_002869 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
  ------ inclusion threshold ------
      0.023   15.4   9.2        2.1    9.1   0.3    5.0  4  Big_9        Bacterial Ig domain
      0.046   14.4   9.6        5.9    7.6   0.1    4.3  4  Cadherin_4   Bacterial cadherin-like domain
       0.11   12.6   0.1        6.3    6.9   0.0    3.3  3  Laminin_G_3  Concanavalin A-like lectin/glucanases superfamil
       0.19   12.0   0.2        5.5    7.4   0.0    2.5  2  Invasin_D3   Invasin, domain 3


Domain annotation for each model (and alignments):
>> Big_9  Bacterial Ig domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.5   0.1      0.11   5.2e+02      10      58 ..     347     404 ..     339     408 .. 0.76
   2 ?    9.1   0.3   0.00047       2.1       3      89 ..     470     592 ..     469     593 .. 0.54
   3 ?    5.8   0.0     0.005        23       2      21 ..     772     791 ..     771     822 .. 0.80
   4 ?   -3.1   0.1       3.2   1.4e+04      10      26 ..    1107    1132 ..    1104    1143 .. 0.60

  Alignments for each domain:
  == domain 1  score: 1.5 bits;  conditional E-value: 0.11
       Big_9  10 pvndaPvavddsvtvtedsv..........landtdpdgdaltvtsltvtlvtapanGt 58 
                 p n  P a++ s+ v ed+            + d+d  g + t+t+  ++++ apa G 
  KOO25066.1 347 PDNSYPRAQAVSFAVLEDTCtqlpdlrahiRDYDVDTLGRPQTLTA-ALAGTRAPARGA 404
                 58999*************9988888766555577777788888775.466666677765 PP

  == domain 2  score: 9.1 bits;  conditional E-value: 0.00047
       Big_9   3 tvtvtvtpvndaPvavddsvtvt...edsvlandtdpdgdaltvtsltvtlvta.........panGtvtinadgt............ltytpna.... 73 
                 ++++ v +vnd Pva +  ++      ++++ n++d+d     ++       ++         p +Gt+    dgt                  +    
  KOO25066.1 470 NLSIEVVAVNDEPVALPGVAEAYmsvLQTLVMNASDVDHVCAPGAGA-----QGvcmvritqpPMQGTLFTL-DGTpiaglavpsltmP-----Savln 557
                 5799*************997666444455577999999754433221.....11223333333555555444.5554444444322220.....12333 PP

       Big_9  74 ...................gfsgtdsftYtvsDgs 89 
                                     + gtdsf + v D++
  KOO25066.1 558 rtllyrsrtfprdcsngcpRQVGTDSFRFEVLDPT 592
                 33344444466666666666677777777666665 PP

  == domain 3  score: 5.8 bits;  conditional E-value: 0.005
       Big_9   2 atvtvtvtpvndaPvavdds 21 
                 a+vtv v +vnd+P  v+  
  KOO25066.1 772 AQVTVRVVNVNDPPCLVSPG 791
                 89************888754 PP

  == domain 4  score: -3.1 bits;  conditional E-value: 3.2
       Big_9   10 pvndaPvavdds.........vtvte 26  
                  p n+aP +v+ +         vtv++
  KOO25066.1 1107 PDNRAPLIVPETrlefvngvnVTVAT 1132
                  66777777777766665443333333 PP

>> Cadherin_4  Bacterial cadherin-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.6   0.1    0.0013       5.9       9      53 ..     347     393 ..     344     409 .. 0.67
   2 ?    6.3   0.1    0.0033        15       2      44 ..     470     507 ..     469     539 .. 0.68
   3 ?    4.3   0.1     0.014        61       1      17 [.     772     788 ..     772     820 .. 0.82
   4 ?   -3.4   0.4       3.4   1.5e+04      40      54 ..     923     937 ..     887     956 .. 0.43

  Alignments for each domain:
  == domain 1  score: 7.6 bits;  conditional E-value: 0.0013
  Cadherin_4   9 gvndaPvavddsatvtedtpltitagnvlandtDvd..gddltvtav 53 
                 + n  P a++ s++v edt ++ ++      d+Dvd  g + t ta+
  KOO25066.1 347 PDNSYPRAQAVSFAVLEDTCTQLPDLRAHIRDYDVDtlGRPQTLTAA 393
                 56889******************854444456666665555444433 PP

  == domain 2  score: 6.3 bits;  conditional E-value: 0.0033
  Cadherin_4   2 tvtitvtgvndaPvavddsatvtedtpltitagnvlandtDvd 44 
                 +++i v +vnd Pva + +a++      t        n++Dvd
  KOO25066.1 470 NLSIEVVAVNDEPVALPGVAEAYMSVLQTL-----VMNASDVD 507
                 589***********9987776554333333.....45666666 PP

  == domain 3  score: 4.3 bits;  conditional E-value: 0.014
  Cadherin_4   1 atvtitvtgvndaPvav 17 
                 a+vt+ v  vnd+P  v
  KOO25066.1 772 AQVTVRVVNVNDPPCLV 788
                 89************854 PP

  == domain 4  score: -3.4 bits;  conditional E-value: 3.4
  Cadherin_4  40 dtDvdgddltvtavt 54 
                 d+ +d  ++t+  ++
  KOO25066.1 923 DNVPDMLTVTIRDFD 937
                 333433333333333 PP

>> Laminin_G_3  Concanavalin A-like lectin/glucanases superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.8   0.0      0.11     5e+02      16      31 ..     104     119 ..      91     140 .. 0.75
   2 ?   -1.3   0.0      0.48   2.2e+03     129     148 ..     241     260 ..     217     268 .. 0.67
   3 ?    6.9   0.0    0.0014       6.3     118     151 ..     305     339 ..     291     340 .. 0.85

  Alignments for each domain:
  == domain 1  score: 0.8 bits;  conditional E-value: 0.11
  Laminin_G_3  16 tssfTvsaWvkpdslp 31 
                   s+fT++aW+  d  p
   KOO25066.1 104 GSGFTIEAWLAADPRP 119
                  689******9988755 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 0.48
  Laminin_G_3 129 ddpfdGlidevriynralsa 148
                   ++f+ +id vr+ + + s+
   KOO25066.1 241 LPRFATYIDGVRVVDSETSD 260
                  46788888888888776654 PP

  == domain 3  score: 6.9 bits;  conditional E-value: 0.0014
  Laminin_G_3 118 gplviGrdp.ggddpfdGlidevriynralsaaeI 151
                    +  G++  g+ + + G ++ +++y ral+a+e+
   KOO25066.1 305 RHVSSGNRFlGDFYAWGGRLHGLHWYGRALNASEV 339
                  456678888778999*******************9 PP

>> Invasin_D3  Invasin, domain 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.6   0.0     0.079   3.5e+02      19      50 ..     769     804 ..     762     814 .. 0.78
   2 ?    7.4   0.0    0.0012       5.5      23      52 ..     928     957 ..     923     967 .. 0.87

  Alignments for each domain:
  == domain 1  score: 1.6 bits;  conditional E-value: 0.079
  Invasin_D3  19 kststltvtlkDangnp..vsgltvtfsttsag..t 50 
                 +s++++tv + + n+ p  vs  ++tf+ + +g   
  KOO25066.1 769 QSAAQVTVRVVNVNDPPclVSPGNMTFTPSLSGstN 804
                 688999999999999999988889999988666322 PP

  == domain 2  score: 7.4 bits;  conditional E-value: 0.0012
  Invasin_D3  23 tltvtlkDangnpvsgltvtfsttsagtls 52 
                 +ltvt++D +++ +sg+ v  + t +gt++
  KOO25066.1 928 MLTVTIRDFDDQMISGQYVDATGTITGTVG 957
                 69*******************999788776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1386 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       416  (0.0232026); expected 358.6 (0.02)
Passed bias filter:                      317  (0.0176809); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.78u 0.30s 00:00:01.08 Elapsed: 00:00:00.46
# Mc/sec: 9125.26
//
Query:       KOO25067.1  [L=185]
Description: alpha beta hydrolase fold protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    7.2e-17   62.7   2.8    8.4e-17   62.5   2.8    1.0  1  Abhydrolase_6  Alpha/beta hydrolase family
    8.1e-08   31.8   0.0      1e-07   31.5   0.0    1.0  1  Hydrolase_4    Serine aminopeptidase, S33
    2.8e-07   30.4   0.1    3.2e-07   30.3   0.1    1.1  1  Abhydrolase_1  alpha/beta hydrolase fold
  ------ inclusion threshold ------
      0.067   13.0   0.0      0.081   12.8   0.0    1.3  1  Ser_hydrolase  Serine hydrolase
        0.2   11.2   0.0       0.24   10.9   0.0    1.1  1  Lipase_2       Lipase (class 2)


Domain annotation for each model (and alignments):
>> Abhydrolase_6  Alpha/beta hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.5   2.8   2.3e-20   8.4e-17       1     143 [.      17     170 ..      17     184 .. 0.71

  Alignments for each domain:
  == domain 1  score: 62.5 bits;  conditional E-value: 2.3e-20
                    EEEE--GC.....GCHHHHHHHHCCTCEEEEE--TTS.TS-GGCS--HHH...CHHHHHHHCCTT...TTSEEEEEETCHHHHHHHHHHCC..... CS
  Abhydrolase_6   1 vlllHGagssassWlvapLaallaagvhvlapDlpGh.Grsdpppldled...ladlaalldelaa.gggpvvlvGHSlGGalalaaapla....l 87 
                    v+++HG++++a++W +  L  ++ ag + +a++l+G+ G s+ + +++     +adl a+++e  + g++p+ +vGHS+  a +l    ++     
     KOO25067.1  17 VVFIHGTFHGAWCWEQHWLEHFSKAGLEAHAISLRGTsG-SPADQTSVKItehVADLKAFVAEALGpGAPPPAIVGHSFASATVLK---YLeaggA 108
                    8*************544778888888888********99.44444444334457999888888888889999**********9999...4433354 PP

                    .EE.EEES-..----TTT....S----TTHHHHHHTT-CCCCHCCH....S-HSCCCCHHHCCCC CS
  Abhydrolase_6  88 vvg.vlldppptalpagl....laaalelllallallrllawlsre....plprlfladedadaa 143
                     +g  l+++   ++p g+    ++++++ l ++++ lr +a+ ++      ++rlf+++e++  +
     KOO25067.1 109 ASGiALICG---VPPSGNgpmtMRFVRRNLGQAWSILRGFAFKTATrepdVARRLFFDEETPAST 170
                    466899999...55555533357777777778888888888884334576666699997774333 PP

>> Hydrolase_4  Serine aminopeptidase, S33
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.5   0.0   2.9e-11     1e-07       7     158 ..      17     160 ..      15     172 .. 0.80

  Alignments for each domain:
  == domain 1  score: 31.5 bits;  conditional E-value: 2.9e-11
  Hydrolase_4   7 vvlvHGlaehsgryae.laeaLaaqGfavyalDhrGhGrsegkrghvpsfddyvdDlaafvekvkeehpel.plfllGhSmGGliallyllrypdkva 102
                  vv++HG    ++  ++   e++ ++G + +a+  rG   s+  +    +++++v+Dl+afv ++    p++ p  ++GhS  ++++l+yl+   +  +
   KOO25067.1  17 VVFIHGTFHGAWCWEQhWLEHFSKAGLEAHAISLRGTSGSPADQT-SVKITEHVADLKAFVAEAL--GPGApPPAIVGHSFASATVLKYLEAGGA-AS 110
                  8999**88877776554***********************66655.778999********97777..6666688****************98888.77 PP

  Hydrolase_4 103 glilsaPalkikaklkappllklllkllgkllpklqvsnnlkadslsrdpevvaay 158
                  g+ l++ +       + p  ++++++ lg+++  l+      ++  +r+p+v +++
   KOO25067.1 111 GIALICGVPPSG---NGPMTMRFVRRNLGQAWSILRG---FAFKTATREPDVARRL 160
                  888887763222...3677888877777777555554...8888888888887765 PP

>> Abhydrolase_1  alpha/beta hydrolase fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.3   0.1   8.8e-11   3.2e-07       1     123 [.      15     134 ..      15     161 .. 0.80

  Alignments for each domain:
  == domain 1  score: 30.3 bits;  conditional E-value: 8.8e-11
                    SEEEEE-STTTCGGGGTTGHHHHHHHHTTSEEEEEEETTSTTSSSTTTGB.CHHSHHHHHHHHH.HHHHHCTTS..SEEEEEETHHHHHHHHHHHH CS
  Abhydrolase_1   1 pvlvilhGlpgssdvwaerglapaLakdgfdvillDlrGvgySspapacinddygtasvaddld.rildalgdd..kltlvGhSmGGmialayaae 93 
                    p++v++hG   +++  +e+ + ++++k+g + +++ lrG   S++  ++      +  + +dl+ ++ +alg +  ++++vGhS+ ++++l y++ 
     KOO25067.1  15 PPVVFIHGTFHGAW-CWEQHWLEHFSKAGLEAHAISLRGTSGSPADQTS----VKITEHVADLKaFVAEALGPGapPPAIVGHSFASATVLKYLEA 105
                    89***********9.6666*********************999888865....56667999999566999987522678***************95 PP

                    HGGGEEEEEEESECSSCCHHHHHHHHHHHH CS
  Abhydrolase_1  94 yperVkalvllgaidpaaslieaqrqqaks 123
                         ++++l+++++p+     ++r+ + +
     KOO25067.1 106 -GGAASGIALICGVPPSGNGPMTMRFVRRN 134
                    .66678888888877766666666666555 PP

>> Ser_hydrolase  Serine hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0   2.3e-05     0.081      12      87 ..      31     115 ..      18     182 .. 0.76

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 2.3e-05
                    TTTCHHHHHHHHCCTEEEEEC--.......TS--HHHHHHHHHHHHHC-STT....EEEEEETCHHHHHHHHHH.HTTSSSEEEEEEE CS
  Ser_hydrolase  12 peHWqsrwekklpaarrveqadw.......lkPdledWvaaleaaveaaeek....vvlvAHSlgclavlhaae.lqlakkvagalLV 87 
                    ++HW  +++k+  +a+++  +         ++ ++ + va l+a v++a ++      +v HS++ ++vl+++e   +     g+ L+
     KOO25067.1  31 EQHWLEHFSKAGLEAHAISLRGTsgspadqTSVKITEHVADLKAFVAEALGPgappPAIVGHSFASATVLKYLEaGGA---ASGIALI 115
                    5799999998888888887766644455435667778888888888887665666689*************9953333...3344333 PP

>> Lipase_2  Lipase (class 2)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   6.7e-05      0.24       3      87 ..      16      97 ..      14     114 .. 0.70

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 6.7e-05
    Lipase_2  3 PviivhGnsdlaaeklskliqkflekgyteaelYattygdteestslerle.kCeyvkqlRklilaVlkyTgakkvdivahsmGvp 87
                Pv+++hG+++ a    ++ +++f+++g ++   +a++   t+ s + +      e+v  l+ ++   l         iv+hs  + 
  KOO25067.1 16 PVVFIHGTFHGAWCWEQHWLEHFSKAGLEA---HAISLRGTSGSPADQTSVkITEHVADLKAFVAEALGPGA-PPPAIVGHSFASA 97
                ********9967666678899******655...788777666654443333367799999998877666444.3667777776655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (185 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       291  (0.0162307); expected 358.6 (0.02)
Passed bias filter:                      264  (0.0147247); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.38u 0.26s 00:00:00.64 Elapsed: 00:00:00.40
# Mc/sec: 1375.19
//
Query:       KOO25068.1  [L=710]
Description: hypothetical protein Ctob_002870 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    0.00018   22.0   0.0    0.00046   20.7   0.0    1.7  2  PH        PH domain
  ------ inclusion threshold ------
      0.035   13.8   1.8      0.051   13.2   0.6    1.8  2  BAR       BAR domain


Domain annotation for each model (and alignments):
>> PH  PH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.7   0.0   5.1e-08   0.00046       2     104 ..     190     291 ..     189     292 .. 0.89
   2 ?   -4.1   0.0         2   1.8e+04      44      61 ..     677     697 ..     671     705 .. 0.71

  Alignments for each domain:
  == domain 1  score: 20.7 bits;  conditional E-value: 5.1e-08
                 EEEEEEEEETSSSSCSEEEEEEEEETTE.EEEESSTTCTTESSEEEEEESTTEEEEEEECTT.SSSSTSEEEEEESTSSSTEEEEEEESSHHHHHHHHH CS
          PH   2 vkeGwLlkkgsgkkkswkkrwfvLkdse.llyykndksekdkepkgsislsncevvevvate.dpkrkfcfelriverngsrtyllqasseeerkeWik 98 
                  +eG L+k ++  k +w  +++ L++ + +l++ n+k+e+ +   + + ls+ +  ++  +e ++kr   fe++  +++    ++l+a+   e+++W+ 
  KOO25068.1 190 DMEGVLFKMSPLTK-IWWSCYARLDRRQkVLIFTNRKDEPPSAASKAVALSKYVLCHEL-PEhHAKRAAAFEIVPLQTE-LPFITLSADGTLEARRWVC 285
                 59***********9.**********7777999999988888888999*****9999988.555**********777443.5****************** PP

                 HHHHHH CS
          PH  99 aiqsai 104
                 a+q+a+
  KOO25068.1 286 ALQEAM 291
                 ***997 PP

  == domain 2  score: -4.1 bits;  conditional E-value: 2
                 EEEEEESTTEEEEEEEC...T CS
          PH  44 pkgsislsncevvevva...t 61 
                 p  s+sls+++v ++++    
  KOO25068.1 677 PSSSVSLSSAVVADDPEvvdG 697
                 788999999999987765541 PP

>> BAR  BAR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.0      0.18   1.6e+03      28      51 ..      56      79 ..      54     167 .. 0.68
   2 ?   13.2   0.6   5.7e-06     0.051     192     238 ..     394     441 ..     390     442 .. 0.94

  Alignments for each domain:
  == domain 1  score: -1.5 bits;  conditional E-value: 0.18
         BAR 28 Feelerrldvteklieklvkelke 51
                Fe++er l+v  ++ ++l +++++
  KOO25068.1 56 FEQAERQLQVIGRELTRLRDATSA 79
                888888888888888887666654 PP

  == domain 2  score: 13.2 bits;  conditional E-value: 5.7e-06
         BAR 192 eelkaeLpnllalevefv.nqlqafveaqldfhkqaaqlleqlqqqls 238
                 e++ ++L+++++  ++++ ++l + +eaql++h  +   l+ql  +l+
  KOO25068.1 394 EQFLTSLDEFSSAMAQQMaDELIRIAEAQLTYHSAMVAHLQQLTASLK 441
                 7999***************************************98775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (710 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       632  (0.0352502); expected 358.6 (0.02)
Passed bias filter:                      379  (0.0211389); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.60u 0.25s 00:00:00.85 Elapsed: 00:00:00.41
# Mc/sec: 5171.51
//
Query:       KOO25069.1  [L=398]
Description: sulfatase-modifying factor 2-like protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    7.4e-62  209.3   3.9    1.1e-61  208.7   3.9    1.2  1  FGE-sulfatase  Sulfatase-modifying factor enzyme 1


Domain annotation for each model (and alignments):
>> FGE-sulfatase  Sulfatase-modifying factor enzyme 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  208.7   3.9   6.2e-66   1.1e-61       3     260 .]       7     279 ..       6     279 .. 0.93

  Alignments for each domain:
  == domain 1  score: 208.7 bits;  conditional E-value: 6.2e-66
                    TTEEEE-SEEEEES-.TSTTGGCCC-S-EEEEES-EEEESS--BHHHHHHHHHHH....H..........................SSETTEEEEE CS
  FGE-sulfatase   3 pemvlipgGsfemGs.eektandeeapahevtvraFaidkteVTnaqyaafveatgyete..........................aasqwwaeve 71 
                    ++mv+++gGsf mGs  ++   +++  ++ v+vr+F++d t VTn+q++af +at+y+te                          + +  w  v+
     KOO25069.1   7 DGMVRLAGGSFIMGSlPNEPRGRDDLEPQGVEVREFFMDATVVTNEQFRAFRKATNYRTEaegfgwsfvlelyateearattnetvKDATHWLAVR 102
                    68*************855556666677788999************************************************9999888899***** PP

                    TSCTTBCCTTC-SSTT-TTSB--S--HHHHHHHHHHHCHHHTS-EE---HHHHHHHHHTT-.....SSSSCTTBSTTSCCG.....B...SSTTTT CS
  FGE-sulfatase  72 ganvrhpegrksdikkradhPvvhVsweDavaYArwlgkktgegyrLPteaEweyAArggk.....kgreypwgdelkpak.....niwqGslakf 157
                    ga++r p g+ks+ik+r + P+vh+s++Da+aY++w+gk      rLPte EweyAAr        + + ypwgde   ++     n wqG    f
     KOO25069.1 103 GASWRYPLGPKSGIKSRLNYPAVHISFNDAKAYCKWAGK------RLPTETEWEYAARQPHvgltkAMKPYPWGDEVPSNGsewrlNVWQG---FF 189
                    ***************************************......*************966777878899******887779999999999...79 PP

                    B--TTCGGS-SS.---TT-S-B-TTS-B-TTCSSEEEEEEE--THCCH-SSCS----SS-SSEEEEC--TTS.T...TGGCTSTT-E.EEE-TT-- CS
  FGE-sulfatase 158 ekeaaaadsqngrtspvgsfppnalGlyDmaGNvwEWtsdwykkyalapaeelsqeaekgelrvvkGgswlkae...lssllraafrasaetpdta 250
                    ++++aa d++ g  +p ++f pna Gly+m+GNvwEWts+ ++              ++ ++rv++Ggs+l+++    ++   +++r+++ t+d++
     KOO25069.1 190 PSSDAALDGFGG-LAPADAFAPNAAGLYNMLGNVWEWTSTYLA--------------KSSRQRVLRGGSYLDSAsgeWNHKVSTSTRMGN-TEDSS 269
                    999999999999.***************************886..............88999**********999889999999***999.7**** PP

                    BTTEEE--EE CS
  FGE-sulfatase 251 asdvGfRlvr 260
                    a+++GfR+v+
     KOO25069.1 270 ADNMGFRCVK 279
                    ********96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (398 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       943  (0.0525964); expected 358.6 (0.02)
Passed bias filter:                      526  (0.0293379); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.50u 0.23s 00:00:00.73 Elapsed: 00:00:00.38
# Mc/sec: 3162.46
//
Query:       KOO25070.1  [L=533]
Description: DNA helicase, partial [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.3e-09   37.0   0.0    5.6e-09   36.3   0.0    1.3  1  Helicase_C  Helicase conserved C-terminal domain


Domain annotation for each model (and alignments):
>> Helicase_C  Helicase conserved C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.3   0.0   3.1e-13   5.6e-09      11     111 .]     132     254 ..     120     254 .. 0.79

  Alignments for each domain:
  == domain 1  score: 36.3 bits;  conditional E-value: 3.1e-13
                 HHTTTTSEEEEEESSHHHHHH.HHHH.................HHHTTSTEEEESTTSTHHHHHHHHHHHH....TTSSSEEEESGGGTSSSTSTTESE CS
  Helicase_C  11 kleeeggkilifvntidrlek.vkll.................lekkgikvavlhgelpqnereeileqfn....kgesdvLiatdvaerGidipkvnl 87 
                    e + k+++f+++ +  ++ v+l+                 +++k +kv+ +++++p  +r + +++f+    +g   ++++ + a+ Gi+++ ++ 
  KOO25070.1 132 RADEPNMKVVVFTRFNEVQQRlVDLIqgetgaggllaskeaegQHTKPLKVLEFNSKTPPLQRHARIKEFQeskdNGAKVMVVTYQTAAVGITLTAASR 230
                 567888999999999994433445556666666666664443333338**********************977655666699999************** PP

                 EEESSSSSSHHHHHHHHTTSSSTT CS
  Helicase_C  88 VinfdlprnvtsyiqriGRtgRag 111
                 V+ +++  ++++ +q++GR++R g
  KOO25070.1 231 VFLLEPSLDPAQEHQAAGRIHRLG 254
                 **********************86 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (533 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       657  (0.0366445); expected 358.6 (0.02)
Passed bias filter:                      527  (0.0293937); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.57u 0.26s 00:00:00.83 Elapsed: 00:00:00.42
# Mc/sec: 3830.79
//
Query:       KOO25071.1  [L=839]
Description: pro-apoptotic serine protease nma111-like protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.1e-25   91.3   1.0    5.7e-22   79.2   0.1    2.6  2  Trypsin_2      Trypsin-like peptidase domain
    1.3e-22   79.6   0.0    5.8e-19   67.9   0.0    3.1  3  PDZ_1          PDZ-like domain
    8.1e-11   41.6   0.1    1.7e-05   24.6   0.0    3.9  3  PDZ_6          PDZ domain
    1.1e-07   32.1   0.0      0.025   14.9   0.0    3.6  4  PDZ_2          PDZ domain
    1.6e-05   24.8   0.0    0.00033   20.5   0.0    2.3  2  Trypsin        Trypsin
    0.00023   21.5   0.0      0.073   13.4   0.0    3.2  3  PDZ            PDZ domain
  ------ inclusion threshold ------
      0.011   14.4   0.2      0.018   13.7   0.2    1.2  1  Peptidase_S46  Peptidase S46
      0.094   12.5   0.3        0.2   11.5   0.3    1.5  1  Peptidase_S7   Peptidase S7, Flavivirus NS3 serine protease
       0.35   10.3   2.2       0.27   10.7   0.9    1.4  2  DUF31          Putative peptidase (DUF31)


Domain annotation for each model (and alignments):
>> Trypsin_2  Trypsin-like peptidase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   79.2   0.1   2.9e-25   5.7e-22       1     150 []      93     239 ..      93     239 .. 0.88
   2 !   10.4   0.1   0.00045      0.89       2     101 ..     534     643 ..     533     700 .. 0.67

  Alignments for each domain:
  == domain 1  score: 79.2 bits;  conditional E-value: 2.9e-25
   Trypsin_2   1 GsGflvgsd.glilTnaHvvdsadgaavkaikkkveeagadgrevpakvvaadpelDlAllkv..ssderaglpplplgpsealkggepvyvvGyplgg 96 
                 ++Gf+v+++ g+i+Tn+Hv ++   +a         +++a+++evp +v ++dp +D+Al+++  +  e  ++  lpl+p+e +++g +++++G+ +g+
  KOO25071.1  93 ATGFVVDKErGYIMTNRHVAGPGPIVAE--------AIFANNEEVPLTVAYYDPVHDFALFRFdpKAVEHMDVVQLPLAPDE-AYVGADIVIIGNNAGE 182
                 69******977**********9999999........9**************************8888888888888899977.66666*******5555 PP

   Trypsin_2  97 eksgsvssGivsgvve...sesaasgegesfl.qtda.atspGsSGGplfdsdGrvvGl 150
                  ks s+++ +++++++   +++++++++ + + +++a  ts+GsSG+p+++ +G+ ++l
  KOO25071.1 183 -KS-SIHRSTLARLDRnapTYNRNGYNDMDTFyMHSAsGTSGGSSGSPVLNGKGHAIAL 239
                 .55.************99988888888888889777758999*************9987 PP

  == domain 2  score: 10.4 bits;  conditional E-value: 0.00045
   Trypsin_2   2 sGflvgsdglilTnaHvvdsadgaav....kaikkkveeagadgrevpakvvaadpelDlAllkv.....ssderaglpplplgpsealkggepvyvvG 91 
                 +G  +++ gl+l +a  +   d+ +v        + v    a   +vpa+vv ++p + +Al++      + ++ra  + l +++++  ++g+++++vG
  KOO25071.1 534 TGMRYRGAGLVLDAAQGLVAVDRNTVtstlGDVIVTVGGNSAAAAAVPARVVFVHPMHNFALVQYdpaalPRRARATSARLAMDTRT-MSTGTSAWLVG 631
                 677788888888888888666666665666556677888888999999*****************9985555555555555566655.55566****** PP

   Trypsin_2  92 yplggeksg..s 101
                   +g ++++  s
  KOO25071.1 632 LKSGLNEEFdaS 643
                 *88877765441 PP

>> PDZ_1  PDZ-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.9   0.0   2.9e-22   5.8e-19       1      75 [.     381     454 ..     381     457 .. 0.96
   2 ?   -1.0   0.0      0.92   1.8e+03      11      31 ..     727     747 ..     724     777 .. 0.76
   3 !    7.8   0.0    0.0017       3.4      49      73 ..     798     822 ..     781     826 .. 0.83

  Alignments for each domain:
  == domain 1  score: 67.9 bits;  conditional E-value: 2.9e-22
       PDZ_1   1 aitpsrfvevaGatfhdLsyqlarsyaipvkgvyvseasgsfklsskekkgviitsinnqptpnLdefievvkki 75 
                 a+tpsr+ e++Ga++++Lsyq+ar+ +++ +gvyv++++++++ +    +g +i s+ ++ptp+L  fie++++ 
  KOO25071.1 381 ALTPSRYFEMGGAIVNELSYQQARNHGVAPRGVYVAHPGYMLRQAR-LARGHVIASVGGVPTPDLASFIEIMRNT 454
                 58****************************************9977.*************************985 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 0.92
       PDZ_1  11 aGatfhdLsyqlarsyaipvk 31 
                  Ga++ ++s  +ar +++p +
  KOO25071.1 727 LGAMLEPISMAAARRLGVPDD 747
                 69*************999865 PP

  == domain 3  score: 7.8 bits;  conditional E-value: 0.0017
       PDZ_1  49 kkgviitsinnqptpnLdefievvk 73 
                 k +v ++ ++ +ptpnL  f+  vk
  KOO25071.1 798 KDEVTVQLVDSTPTPNLPSFLACVK 822
                 67899***************99988 PP

>> PDZ_6  PDZ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.6   0.0   8.5e-09   1.7e-05       3      56 .]     315     365 ..     313     365 .. 0.96
   2 !   12.1   0.0   6.4e-05      0.13       2      53 ..     413     463 ..     412     465 .. 0.85
   3 ?   -1.4   0.1       1.1   2.2e+03      19      28 ..     564     573 ..     563     575 .. 0.89

  Alignments for each domain:
  == domain 1  score: 24.6 bits;  conditional E-value: 8.5e-09
       PDZ_6   3 taVdpgsPAdrAG.lrvGDiilsvNGqpveglsladvaallrgsagesvvlvvrr 56 
                 ++V p +PAd  G l++GDi+l v G+ +  +s   + a+l +++g +v l+v+r
  KOO25071.1 315 SEVLPKGPAD--GvLEPGDILLRVAGRWC--TSFIALEAALDAAVGGHVALEVCR 365
                 789*******..99***************..**********************98 PP

  == domain 2  score: 12.1 bits;  conditional E-value: 6.4e-05
       PDZ_6   2 VtaVdpgsPAdrAGlrvGDiilsvNGqpveglsladvaallr.gsagesvvlv 53 
                 V+   pg    +A l  G +i sv+G+p+   +la +++++r +  ge+++++
  KOO25071.1 413 VYVAHPGYMLRQARLARGHVIASVGGVPT--PDLASFIEIMRnTTHGEQLTIK 463
                 5666778888888899*************..***********87888887776 PP

  == domain 3  score: -1.4 bits;  conditional E-value: 1.1
       PDZ_6  19 GDiilsvNGq 28 
                 GD+i+ v+G 
  KOO25071.1 564 GDVIVTVGGN 573
                 9******996 PP

>> PDZ_2  PDZ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.0   1.3e-05     0.025      14      78 ..     309     372 ..     296     376 .. 0.84
   2 !   12.1   0.0   9.5e-05      0.19      28      80 ..     423     475 ..     403     477 .. 0.91
   3 ?   -1.3   0.0       1.5   2.9e+03      34      44 ..     563     573 ..     546     578 .. 0.76
   4 ?   -1.5   0.0       1.6   3.2e+03      41      70 ..     806     835 ..     795     838 .. 0.83

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 1.3e-05
                 .-EEEEE.E-TTSGGGGT.--TT-EEEEETTB--SSHHHHHHHHHTS-TT-EEEEEEEETTEEEEE CS
       PDZ_2  14 ggvlvvs.VkeggPaakaglkagDvilkvdgkkvksledlislllkkkpGdtVkltvlRdgkkktv 78 
                  g+lv s V ++gPa++  l++gD++l v g+  +s   l+ +l  +  G  V l+v R+g++ + 
  KOO25071.1 309 LGLLVFSeVLPKGPADGV-LEPGDILLRVAGRWCTSFIALEAAL-DAAVGGHVALEVCRGGQRISH 372
                 57788777*******999.***************8887777776.578999**********99765 PP

  == domain 2  score: 12.1 bits;  conditional E-value: 9.5e-05
                 GGT.--TT-EEEEETTB--SSHHHHHHHHHTS-TT-EEEEEEEETTEEEEEEE CS
       PDZ_2  28 akaglkagDvilkvdgkkvksledlislllkkkpGdtVkltvlRdgkkktvev 80 
                  +a l+ g vi +v+g++  +l+++i+ ++++  G++++++++   ++ +v++
  KOO25071.1 423 RQARLARGHVIASVGGVPTPDLASFIEIMRNTTHGEQLTIKFYDLAERTHVQL 475
                 5788999************************************9998888876 PP

  == domain 3  score: -1.3 bits;  conditional E-value: 1.5
                 TT-EEEEETTB CS
       PDZ_2  34 agDvilkvdgk 44 
                  gDvi+ v+g+
  KOO25071.1 563 LGDVIVTVGGN 573
                 39999999986 PP

  == domain 4  score: -1.5 bits;  conditional E-value: 1.6
                 ETTB--SSHHHHHHHHHTS-TT-EEEEEEE CS
       PDZ_2  41 vdgkkvksledlislllkkkpGdtVkltvl 70 
                 vd+++  +l+++   + +k+ Gd +++++ 
  KOO25071.1 806 VDSTPTPNLPSFLACVKHKQDGDVLRIKYA 835
                 888999999999999999999999999986 PP

>> Trypsin  Trypsin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.5   0.0   1.7e-07   0.00033      21     210 ..      87     251 ..      66     261 .. 0.72
   2 ?    1.5   0.0      0.11   2.2e+02     136     192 ..     745     801 ..     718     825 .. 0.71

  Alignments for each domain:
  == domain 1  score: 20.5 bits;  conditional E-value: 1.7e-07
                 TTCEEEEEEEEEETT..EEEEEGGGTTTGGGEEEEESESBTTSCTTTEEEEEEEEEEEETTEBTTTTTTTEEEEEESSSSTSBSSBHCCBBCSTTHTTS CS
     Trypsin  21 ksgkhlCgGslisen..wvlTAaHCvsnasdvkvvlgehnlkksegkeqklkvekvivhpnynpstldnDiallklkepvklgdtvrpiclpaassslp 117
                 +sg++ ++G++++++  +++T+ H+        +++ e  + ++e+    l+v+       y+p     D+al + + +    +++  ++lp a +++ 
  KOO25071.1  87 QSGTLQATGFVVDKErgYIMTNRHVAGP----GPIVAEAIFANNEE--VPLTVAY------YDPVH---DFALFRFDPK--AVEHMDVVQLPLAPDEAY 168
                 344889*******9999*********96....44555544444444..7888888......9**98...**********..888999999999888889 PP

                 TTTEEEEEESSBSSTSSBSSBEEEEEEEEEEHH..HHHHH.TTTTSTTTEEEEESTTSSSBCTTTTTTSEEEETTTEEEEEEEEESSSSCTTSEEE CS
     Trypsin 118 vgttclvsGwgrtkekgksdtlqevevpvvsre..tcksa.ykgkvtenmlcagakeggkdacqGDSGGPlvcsdgelvGivswgkgcakgnrpgv 210
                 vg+ ++++G    +++    +++  ++  ++r+  t +++ y      n + + ++  +  +  G SG+P+++++g ++ ++ +gk  +++   g+
  KOO25071.1 169 VGADIVIIGNNAGEKS----SIHRSTLARLDRNapTYNRNgY------NDMDTFYMHSASGTSGGSSGSPVLNGKGHAIALNAGGKVGTSA---GF 251
                 9977777776665444....4666666666665334444333......33344444445789**************999999998766655...44 PP

  == domain 2  score: 1.5 bits;  conditional E-value: 0.11
                 SSBEEEEEEEEEEHHHHHHHTTTTSTTTEEEEEST.TSSSBCTTTTTTSEEEETTTEE CS
     Trypsin 136 sdtlqevevpvvsretcksaykgkvtenmlcagak.eggkdacqGDSGGPlvcsdgel 192
                 +d l  +  p++ ++  ++a +g v +++  + ++  +g+   +G +GG+++c++ e+
  KOO25071.1 745 PDDLLDASAPALADAAGSTA-DGAVASTHSAVSSPgADGVEEAYGEAGGSVLCGKDEV 801
                 55566666666666666664.4444455444444446789999***********9955 PP

>> PDZ  PDZ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.4   0.0   3.6e-05     0.073      29      67 ..     313     350 ..     285     363 .. 0.73
   2 ?    3.7   0.0     0.041        82      35      61 ..     418     444 ..     401     463 .. 0.78
   3 ?   -1.0   0.0       1.2   2.3e+03      47      60 ..     564     577 ..     563     588 .. 0.83

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 3.6e-05
                 EEEEECTTSHHHHHTSSTTEEEEEETTEETTTSHHHHHH CS
         PDZ  29 fvsevlpggaaeadglkvGDkIlsvNgvdvenvsheeav 67 
                 + sevlp+g+a+   l++GD++l+v g+  +++  +ea+
  KOO25071.1 313 VFSEVLPKGPADGV-LEPGDILLRVAGRWCTSFIALEAA 350
                 559********999.************999888544443 PP

  == domain 2  score: 3.7 bits;  conditional E-value: 0.041
                 TT.SHHHHHTSSTTEEEEEETTEETTTS CS
         PDZ  35 pg.gaaeadglkvGDkIlsvNgvdvenv 61 
                 pg +  +a  l  G++I sv+gv++ ++
  KOO25071.1 418 PGyMLRQAR-LARGHVIASVGGVPTPDL 444
                 665566666.************998776 PP

  == domain 3  score: -1.0 bits;  conditional E-value: 1.2
                 TEEEEEETTEETTT CS
         PDZ  47 GDkIlsvNgvdven 60 
                 GD+I+ v+g + + 
  KOO25071.1 564 GDVIVTVGGNSAAA 577
                 9********88765 PP

>> Peptidase_S46  Peptidase S46
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.2     9e-06     0.018     627     656 ..     216     245 ..     190     261 .. 0.81

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 9e-06
                    ES----TT-TT-EEE-TTS-EEEEEEEE-G CS
  Peptidase_S46 627 stnDitGGNSGSPvlngkgelvGlaFDgni 656
                    s   + GG SGSPvlngkg+ + l+  g +
     KOO25071.1 216 SASGTSGGSSGSPVLNGKGHAIALNAGGKV 245
                    556689****************99988865 PP

>> Peptidase_S7  Peptidase S7, Flavivirus NS3 serine protease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.3    0.0001       0.2      90     118 ..     217     245 ..     196     251 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.0001
                   XXXXXTT-TTSEEE-TTSXEEEECEEEEE CS
  Peptidase_S7  90 dlnlssGsSGSlvlnqnkqivgiYfatve 118
                   ++  s+GsSGS+vln ++ ++ +  ++ +
    KOO25071.1 217 ASGTSGGSSGSPVLNGKGHAIALNAGGKV 245
                   556689**************999877755 PP

>> DUF31  Putative peptidase (DUF31)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.9   0.0       3.9   7.7e+03      58      67 ..     104     113 ..     103     113 .. 0.90
   2 ?   10.7   0.9   0.00014      0.27     320     372 ..     186     241 ..     174     242 .. 0.78

  Alignments for each domain:
  == domain 1  score: -3.9 bits;  conditional E-value: 3.9
       DUF31  58 YlATNlHVaa 67 
                 Y+ TN HVa 
  KOO25071.1 104 YIMTNRHVAG 113
                 999*****95 PP

  == domain 2  score: 10.7 bits;  conditional E-value: 0.00014
       DUF31 320 itdafianpk...snykekkytnyGlgyllkssalagGaSGSlvrnkdnklvGIyf 372
                 i  +++a+ +    +y+ + y  +   y+ + s  +gG+SGS+v+n ++  ++ + 
  KOO25071.1 186 IHRSTLARLDrnaPTYNRNGYNDMDTFYMHSASGTSGGSSGSPVLNGKGHAIALNA 241
                 44444444423347999999***************************999998875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (839 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       463  (0.0258241); expected 358.6 (0.02)
Passed bias filter:                      373  (0.0208043); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.62u 0.27s 00:00:00.89 Elapsed: 00:00:00.41
# Mc/sec: 6153.67
//
Query:       KOO25072.1  [L=71]
Description: hypothetical protein Ctob_002873 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.2e-13   51.4   4.1    1.3e-13   51.2   4.1    1.0  1  HSCB_C           HSCB C-terminal oligomerisation domain
  ------ inclusion threshold ------
      0.015   15.0   0.3      0.043   13.6   0.1    1.7  2  PolyA_pol_RNAbd  Probable RNA and SrmB- binding site of polym
       0.31   11.5   1.7       0.65   10.4   1.7    1.7  1  H-kinase_dim     Signal transducing histidine kinase, homodim
        0.6   10.4   3.5        1.2    9.5   1.0    2.0  2  DUF349           Domain of Unknown Function (DUF349)


Domain annotation for each model (and alignments):
>> HSCB_C  HSCB C-terminal oligomerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.2   4.1   2.9e-17   1.3e-13      10      75 ..       1      64 [.       1      65 [. 0.95

  Alignments for each domain:
  == domain 1  score: 51.2 bits;  conditional E-value: 2.9e-17
                HHHHHHHHCGGGSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHHH CS
      HSCB_C 10 MelrEeleeaeeaadkeeleelkaeveerieeleaeleeafekkdleaaadllrrlrYlekikeei 75
                Me+rE+l ea  +   ++l+ l++++++ +e l++el++af+++d+e+a +l+ rl+Yl++i+eei
  KOO25072.1  1 MEVREALVEA-GK-RLDKLQPLRDANTTSMERLYDELASAFAAQDMEQALKLTARLQYLQRIEEEI 64
                **********.34.67*************************999*********************9 PP

>> PolyA_pol_RNAbd  Probable RNA and SrmB- binding site of polymerase A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.0      0.32   1.4e+03       7      24 ..       2      19 ..       2      22 .. 0.78
   2 ?   13.6   0.1   9.6e-06     0.043      22      61 ..      26      65 ..      23      68 .. 0.89

  Alignments for each domain:
  == domain 1  score: -0.9 bits;  conditional E-value: 0.32
  PolyA_pol_RNAbd  7 eTaaairklaplLkkisp 24
                     e+++a+ +  ++L+k+ p
       KOO25072.1  2 EVREALVEAGKRLDKLQP 19
                     678899999999988776 PP

  == domain 2  score: 13.6 bits;  conditional E-value: 9.6e-06
  PolyA_pol_RNAbd 22 ispeRifeEllKlLlsghpeaglelLretgLlkylfPela 61
                      s+eR+++El   + + + e++l+l  +++ l+ +  e++
       KOO25072.1 26 TSMERLYDELASAFAAQDMEQALKLTARLQYLQRIEEEIH 65
                     699**********************999999998877775 PP

>> H-kinase_dim  Signal transducing histidine kinase, homodimeric domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   1.7   0.00015      0.65      26      65 ..      26      67 ..       2      69 .. 0.85

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00015
  H-kinase_dim 26 arLnqsleefr..fenglkasvtelksslqnlgrisgeLQeg 65
                  ++++++++e++  f +++ +++ +l + lq l+ri +e++e 
    KOO25072.1 26 TSMERLYDELAsaFAAQDMEQALKLTARLQYLQRIEEEIHER 67
                  566666777767788999999999****************96 PP

>> DUF349  Domain of Unknown Function (DUF349)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.5   0.1     0.042   1.9e+02      33      48 ..       2      17 ..       1      34 [. 0.64
   2 ?    9.5   1.0   0.00026       1.2      11      44 ..      29      62 ..      25      68 .. 0.91

  Alignments for each domain:
  == domain 1  score: 2.5 bits;  conditional E-value: 0.042
      DUF349 33 ekKealieeaealaks 48
                e +eal+e  + l+k 
  KOO25072.1  2 EVREALVEAGKRLDKL 17
                7799999999888653 PP

  == domain 2  score: 9.5 bits;  conditional E-value: 0.00026
      DUF349 11 dafferrkahfeeqdaereenlekKealieeaea 44
                ++ ++ ++ +f++qd e++  l+++ + ++++e+
  KOO25072.1 29 ERLYDELASAFAAQDMEQALKLTARLQYLQRIEE 62
                778999*************************997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (71 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       936  (0.0522059); expected 358.6 (0.02)
Passed bias filter:                      537  (0.0299515); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.38u 0.26s 00:00:00.64 Elapsed: 00:00:00.41
# Mc/sec: 524.23
//
Query:       KOO25073.1  [L=330]
Description: hypothetical protein Ctob_002872 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
  ------ inclusion threshold ------
       0.71    8.3   5.4       0.99    7.8   5.4    1.1  1  Herpes_UL25  Herpesvirus UL25 family


Domain annotation for each model (and alignments):
>> Herpes_UL25  Herpesvirus UL25 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.8   5.4   5.5e-05      0.99      31     122 ..      75     163 ..      48     173 .. 0.69

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 5.5e-05
                  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXX--EE.. CS
  Herpes_UL25  31 llreealeasreevevlevkkralraeLdnlaqkavalaeeierrlkevEellekiael.eaaaaaeeaaaarpplspssaspltavasaeev 122
                      ++le+ r e+e++++++r +ra L+  + +a++  e+ e++l++v + ++++a l +++ aa  aa a + +s+s+++p  av  ++++
   KOO25073.1  75 NRAFKRLELERLELEEERARRREARAKLELAKATAQE--EKREKDLAKVAARAARAARLsTRPGAAAAAA-A-RVTSASPPRPSAAVEPSSPT 163
                  33334555577899**************976655554..66789**********9999954443333333.3.46888899988888777765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (330 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1376  (0.0767472); expected 358.6 (0.02)
Passed bias filter:                      613  (0.0341904); expected 358.6 (0.02)
Passed Vit filter:                        64  (0.00356964); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.54u 0.25s 00:00:00.79 Elapsed: 00:00:00.43
# Mc/sec: 2289.10
//
Query:       KOO25074.1  [L=87]
Description: hypothetical protein Ctob_002875, partial [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (87 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       671  (0.0374254); expected 358.6 (0.02)
Passed bias filter:                      359  (0.0200234); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.23s 00:00:00.60 Elapsed: 00:00:00.38
# Mc/sec: 678.82
//
Query:       KOO25075.1  [L=714]
Description: hypothetical protein Ctob_002874 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (714 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       897  (0.0500307); expected 358.6 (0.02)
Passed bias filter:                      311  (0.0173462); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.62u 0.26s 00:00:00.88 Elapsed: 00:00:00.41
# Mc/sec: 5263.49
//
Query:       KOO25076.1  [L=77]
Description: hypothetical protein Ctob_002866, partial [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.33   11.4   0.2       0.33   11.4   0.2    2.5  3  LPP       Lipoprotein leucine-zipper


Domain annotation for each model (and alignments):
>> LPP  Lipoprotein leucine-zipper
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.2   1.8e-05      0.33      35      44 ..       8      17 ..       3      18 .. 0.88
   2 ?    0.7   0.2     0.038   6.9e+02      28      43 ..      29      44 ..      21      47 .. 0.74
   3 ?   -1.7   0.1      0.23   4.1e+03      18      41 ..      62      66 ..      55      72 .. 0.49

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 1.8e-05
         LPP 35 eEAaRANqRl 44
                 EA+RANqRl
  KOO25076.1  8 SEAMRANQRL 17
                6********8 PP

  == domain 2  score: 0.7 bits;  conditional E-value: 0.038
         LPP 28 aaaqaakeEAaRANqR 43
                 ++++ + EA   NqR
  KOO25076.1 29 RQSNQRQSEAISGNQR 44
                4567778888888887 PP

  == domain 3  score: -1.7 bits;  conditional E-value: 0.23
         LPP 18 qlssdvnsakaaaqaakeEAaRAN 41
                ++ss                   N
  KOO25076.1 62 AISS-------------------N 66
                2222...................2 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (77 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       741  (0.0413297); expected 358.6 (0.02)
Passed bias filter:                      294  (0.016398); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.32u 0.23s 00:00:00.55 Elapsed: 00:00:00.43
# Mc/sec: 537.87
//
Query:       KOO25077.1  [L=105]
Description: hypothetical protein Ctob_012197 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (105 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       610  (0.0340231); expected 358.6 (0.02)
Passed bias filter:                      296  (0.0165096); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.25s 00:00:00.61 Elapsed: 00:00:00.40
# Mc/sec: 785.59
//
Query:       KOO25078.1  [L=357]
Description: pyrazinamidase nicotinamidase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    5.8e-29  101.5   0.6    8.2e-28   97.7   0.6    2.1  1  Isochorismatase  Isochorismatase family
      7e-12   44.0   0.2    3.2e-05   23.2   0.2    2.5  2  EF-hand_1        EF hand
    9.4e-11   40.7   0.1    6.8e-05   22.5   0.1    2.7  2  EF-hand_6        EF-hand domain
    9.7e-11   40.7   0.1    0.00054   19.3   0.0    2.4  2  EF-hand_5        EF hand
    6.1e-10   39.4   0.2    1.1e-09   38.6   0.2    1.4  1  EF-hand_7        EF-hand domain pair
    1.7e-07   31.0   0.5    7.3e-07   28.9   0.2    2.0  2  EF-hand_8        EF-hand domain pair


Domain annotation for each model (and alignments):
>> Isochorismatase  Isochorismatase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   97.7   0.6   2.7e-31   8.2e-28       2     174 ..      80     306 ..      79     307 .. 0.97

  Alignments for each domain:
  == domain 1  score: 97.7 bits;  conditional E-value: 2.7e-31
  Isochorismatase   2 alvviDmqndfveegvkeseeisavveninkllkaarkagipviftrdvhe........................................... 52 
                      +l++iD+qndf+ +g  ++ ++++vv+ in+l ++    ++ v ++ d h+                                           
       KOO25078.1  80 CLLIIDVQNDFI-GGSLAVTGAEKVVPIINELRRKLA-FDV-VAYSMDWHPynhcsffetfrdrahgsrpsevhpehppdqkaiheaptmfsmv 170
                      79**********.***********************6.777.99999999999***************************************** PP

  Isochorismatase  53 ..leevkgdlderkaaphfkpgttgaelvpelaplegdvvvdKt......rfsaf......agtdldeiLkelgiktivlaGiatdvCVeatar 132
                        + +++ + ++  +++h+++gt+g+e +++l+ l++dv+v K        +saf      + t+l++ L+++ + +++l+Gia d+CV ++a+
       KOO25078.1 171 tlTAPTGAPMSQVLWPRHCVQGTWGSENHEDLEILPTDVCVLKGtdasidSYSAFfdnmkfKATGLVDELNARRVSHLYLVGIAFDYCVCHSAL 264
                      *******************************************99999999******************************************* PP

  Isochorismatase 133 daldlGyevvvvsDAvaalspelhdaalkrlkqafatvitte 174
                      + + +G+ v+vv+DA+aa+ p+  + a ++l +a++ v+t++
       KOO25078.1 265 HSASEGFVVTVVEDATAAVAPDSTARARAMLTEAGVRVCTSK 306
                      ***************************************987 PP

>> EF-hand_1  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.2   0.2   1.1e-08   3.2e-05       5      28 ..       4      27 ..       1      28 [. 0.89
   2 !   18.5   0.0   3.2e-07   0.00097       4      27 ..      45      68 ..      42      69 .. 0.88

  Alignments for each domain:
  == domain 1  score: 23.2 bits;  conditional E-value: 1.1e-08
                HHHHHTTTSSSEEEHHHHHHHHHH CS
   EF-hand_1  5 iFrefDkDgdGkIdfeEfkellkk 28
                + +++D+D+dG+Id  E+++ll++
  KOO25078.1  4 LLSKYDTDNDGFIDERELRALLSD 27
                5689****************9986 PP

  == domain 2  score: 18.5 bits;  conditional E-value: 3.2e-07
                HHHHHHTTTSSSEEEHHHHHHHHH CS
   EF-hand_1  4 eiFrefDkDgdGkIdfeEfkellk 27
                 + + +D Dg+Gk++ +E+++++k
  KOO25078.1 45 TLLNAIDSDGSGKVSTDELMRAWK 68
                567899***************997 PP

>> EF-hand_6  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.5   0.1   2.3e-08   6.8e-05       5      28 ..       4      27 ..       1      33 [. 0.87
   2 !   15.3   0.0   4.6e-06     0.014       3      25 ..      44      66 ..      42      71 .. 0.87

  Alignments for each domain:
  == domain 1  score: 22.5 bits;  conditional E-value: 2.3e-08
   EF-hand_6  5 aFklfDkdgdGkidaeElrkalrk 28
                +  ++D+d+dG+id  Elr++l++
  KOO25078.1  4 LLSKYDTDNDGFIDERELRALLSD 27
                6679******************94 PP

  == domain 2  score: 15.3 bits;  conditional E-value: 4.6e-06
   EF-hand_6  3 reaFklfDkdgdGkidaeElrka 25
                r + +++D dg+Gk++++El++a
  KOO25078.1 44 RTLLNAIDSDGSGKVSTDELMRA 66
                667789**************987 PP

>> EF-hand_5  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.9   0.1   2.4e-07   0.00073       5      24 ..       5      24 ..       2      25 .. 0.89
   2 !   19.3   0.0   1.8e-07   0.00054       3      23 ..      45      65 ..      42      67 .. 0.88

  Alignments for each domain:
  == domain 1  score: 18.9 bits;  conditional E-value: 2.4e-07
                HHHH-SS-SSCE-HHHHHHH CS
   EF-hand_5  5 FqaiDlNgDGkIskeELktl 24
                +++ D+++DG+I+  EL++l
  KOO25078.1  5 LSKYDTDNDGFIDERELRAL 24
                6899**************97 PP

  == domain 2  score: 19.3 bits;  conditional E-value: 1.8e-07
                HHHHHH-SS-SSCE-HHHHHH CS
   EF-hand_5  3 dtFqaiDlNgDGkIskeELkt 23
                 +++aiD +g+Gk+s +EL++
  KOO25078.1 45 TLLNAIDSDGSGKVSTDELMR 65
                5799***************86 PP

>> EF-hand_7  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.6   0.2   3.6e-13   1.1e-09       9      69 ..       6      66 ..       1      68 [. 0.84

  Alignments for each domain:
  == domain 1  score: 38.6 bits;  conditional E-value: 3.6e-13
   EF-hand_7  9 kelDtdgdgyldkeellrllrkifqgagegsklsdee.lellfkefDtdkdGvisfdEFlkl 69
                 ++Dtd+dg++d++el+ ll  ++   g +s + de+ +++l++ +D+d++G++s dE++++
  KOO25078.1  6 SKYDTDNDGFIDERELRALLSDMSYE-GIASTTLDEKlVRTLLNAIDSDGSGKVSTDELMRA 66
                68***************999976655.666666665579*******************9876 PP

>> EF-hand_8  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.0   0.2    0.0017       5.1      31      52 ..       4      25 ..       4      27 .. 0.86
   2 !   28.9   0.2   2.4e-10   7.3e-07       2      53 ..      13      68 ..      12      68 .. 0.90

  Alignments for each domain:
  == domain 1  score: 7.0 bits;  conditional E-value: 0.0017
   EF-hand_8 31 lfrefDtdgdGkisfeEFcvll 52
                l+++ Dtd+dG i+  E  +ll
  KOO25078.1  4 LLSKYDTDNDGFIDERELRALL 25
                67889*********99988776 PP

  == domain 2  score: 28.9 bits;  conditional E-value: 2.4e-10
   EF-hand_8  2 kgkItreelrrilrilglkk....glseeevdilfrefDtdgdGkisfeEFcvlle 53
                +g I+  elr  l+ + +++    +l e+ v++l++++D dg+Gk+s +E +  ++
  KOO25078.1 13 DGFIDERELRALLSDMSYEGiastTLDEKLVRTLLNAIDSDGSGKVSTDELMRAWK 68
                799********9999999999976677777*********************99885 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (357 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       380  (0.0211947); expected 358.6 (0.02)
Passed bias filter:                      327  (0.0182386); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.44u 0.22s 00:00:00.66 Elapsed: 00:00:00.36
# Mc/sec: 2972.81
//
Query:       KOO25079.1  [L=332]
Description: solanesyl diphosphate synthase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.7e-64  216.3   0.1    4.5e-64  216.0   0.1    1.1  1  polyprenyl_synt  Polyprenyl synthetase
    0.00024   20.8   0.4    0.00033   20.3   0.4    1.1  1  HEPPP_synt_1     Heptaprenyl diphosphate synthase (HEPPP synt


Domain annotation for each model (and alignments):
>> polyprenyl_synt  Polyprenyl synthetase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  216.0   0.1     5e-68   4.5e-64       2     253 ..      36     281 ..      35     284 .. 0.92

  Alignments for each domain:
  == domain 1  score: 216.0 bits;  conditional E-value: 5e-68
                      HHHHHHHHHHHHSSS--HHHHHHHHHHHHHS.CGHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-SEETTEE-HHHCTCHHHHHHHHHHHHHHH CS
  polyprenyl_synt   2 elleealeylveagGKrlRpllvllaaealk.eeeeelekaavlawivellhaasLvhDDimDdsetRRGqpcahrlvGnklAindgdfllara 94 
                      + l+++++++++ +GKr+R++lvllaa a +  ++    ++++la+i+e++haasL+hDD++D  +tRRG+++ahr++Gnk+A+++gdfllara
       KOO25079.1  36 PVLTRVAQQFFDLSGKRFRSTLVLLAAMAANgGRP-GNAQQQQLAEITEMIHAASLLHDDVIDMTDTRRGAKSAHRIYGNKVAVLAGDFLLARA 128
                      57999**************************6333.34779***************************************************** PP

                      HHHHHHHHSTTHHHHHHHHHHHHHHHHHHHHHHHHTTTTTCCC.SHHHHHHHHHHHTHHHCHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHH CS
  polyprenyl_synt  95 fellaklfekslellelfsevllqtveGqlldleeekdddlskfsleeyleivkyKTaylfalpvalaallagasdeelealkdiglelGlaFQ 188
                      + ll++l  ++++++el ++++ ++v+G++++l+++ ++ l+   +++y +++++KTa+l++l++++ a l+g+++++ +al+ +g++lG+a+Q
       KOO25079.1 129 SVLLSRL--NDTRVVELQATAIEEMVQGEVMQLKASPQELLQ---MDHYVNKTYRKTAALMSLACQASAKLGGCEPKVEAALQAYGRHLGIAYQ 217
                      *******..889*********************888766777...*****************************99****************** PP

                      HHHHHHHHHS-HHHHSS-....TSHHHHTT---HHHHHHHHCT-HHHHHHHHHHTTSSHHHHHHHHHHH CS
  polyprenyl_synt 189 iqDDylDlfgdpevlgKp....agtDiqegkctlpilkalelaspeqrkvlkeilgkkaekeedvkeal 253
                      ++DD+lD++g +++lg      a + +++g +t+p+l+a + + pe    + +++++++ +e+dv+++ 
       KOO25079.1 218 VVDDLLDFTGPSDTLGTTlglpALSHLKQGLATAPTLFAAD-EFPE----VGAMVQRRFGEEGDVAAVS 281
                      ***********9998776444489*****************.8888....8899999999999998775 PP

>> HEPPP_synt_1  Heptaprenyl diphosphate synthase (HEPPP synthase) subunit 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.3   0.4   3.6e-08   0.00033      18     135 ..      57     183 ..      54     193 .. 0.69

  Alignments for each domain:
  == domain 1  score: 20.3 bits;  conditional E-value: 3.6e-08
  HEPPP_synt_1  18 lllllsllee.aeltekekeeyiltamlvqiAldtHdkvsek.keeeeeekknr....qLtVLAGdyYSglYYklLaevkdielirllaeaikeine 108
                   l+ll ++ ++     ++++++++  + ++++A   Hd v +  ++++ +++ +r    +  VLAGd+  +    lL++++d + ++l a+ai e+  
    KOO25079.1  57 LVLLAAMAANgGRPGNAQQQQLAEITEMIHAASLLHDDVIDMtDTRRGAKSAHRiygnKVAVLAGDFLLARASVLLSRLNDTRVVELQATAIEEMVQ 153
                   5566666655334445566666666677899999999997764555555555554444899*********************************998 PP

  HEPPP_synt_1 109 hkiklYekkee...tveellesvkkiesaL 135
                     ++  +++ +   +++++++++    +aL
    KOO25079.1 154 GEVMQLKASPQellQMDHYVNKTYRKTAAL 183
                   877766654431114555555555555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (332 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       582  (0.0324614); expected 358.6 (0.02)
Passed bias filter:                      436  (0.0243181); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.43u 0.20s 00:00:00.63 Elapsed: 00:00:00.35
# Mc/sec: 2816.22
//
Query:       KOO25080.1  [L=388]
Description: histone acetyltransferase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      8e-17   61.1   0.1    1.6e-16   60.1   0.1    1.5  1  Bromodomain      Bromodomain
    9.6e-12   45.0   0.2    1.6e-11   44.3   0.2    1.4  1  Acetyltransf_10  Acetyltransferase (GNAT) domain
    3.9e-11   43.2   0.0    7.6e-11   42.3   0.0    1.5  1  Acetyltransf_1   Acetyltransferase (GNAT) family
    1.9e-07   31.4   0.1    3.8e-07   30.4   0.1    1.5  1  Acetyltransf_7   Acetyltransferase (GNAT) domain
  ------ inclusion threshold ------
       0.03   14.2   0.0      0.059   13.2   0.0    1.4  1  RestrictionSfiI  Type II restriction enzyme SfiI
      0.037   14.1   0.0      0.098   12.7   0.0    1.8  1  Acetyltransf_9   Acetyltransferase (GNAT) domain
      0.044   13.7   0.0       0.11   12.4   0.0    1.6  1  FR47             FR47-like protein


Domain annotation for each model (and alignments):
>> Bromodomain  Bromodomain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.1   0.1   6.4e-20   1.6e-16       2      83 ..     282     365 ..     281     366 .. 0.92

  Alignments for each domain:
  == domain 1  score: 60.1 bits;  conditional E-value: 6.4e-20
                  HHHHHHBHTTTCGGGGCSTT-GCCSTTHHHH.SS---HHHHHHHH..HTT--SSHHHHHHHHHHHHHHHHHHSHTTSHHHHHHH CS
  Bromodomain   2 ekilsellehklaepFlepvdpeefpdyyavikkPldLstIkkkl..esnkYksladfeadlkllfsNarkyngegsviyelae 83 
                  ++i + +  h++a pF + v+ e  pdy++++k+P+dLs+I++++  +   Y +++++ adl  +f+N+r yn++++v +e+a+
   KOO25080.1 282 KTIYEAVSAHEDAWPFKQAVKHEDAPDYHEIVKNPIDLSMIHERIyrRPCYYVTPDQLLADLYVMFENCRLYNPDTTVFWECAT 365
                  578888999************************************75555677*****************************97 PP

>> Acetyltransf_10  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.3   0.2   6.1e-15   1.6e-11      12     115 ..      68     178 ..      50     185 .. 0.77

  Alignments for each domain:
  == domain 1  score: 44.3 bits;  conditional E-value: 6.1e-15
  Acetyltransf_10  12 tfkefisp...ealrerieegealllvaeeggkivGvi....elrdgs....hisllfVdpeyrgqGigkaLleaveeeaekdgikleltvnas 94 
                      +f++++ +   + +++ + + +++ lv++  g++vG i     +   s    +i  ++V+ +++ qG+g++++++++e++++d+i+  +   a+
       KOO25080.1  68 VFTQQLPKmprAYISRLVLDRQHVSLVCTFRGEVVGGItyrpVM---SqrmaEIVFCAVSAKHQVQGYGTRIMNQIKEQCKRDNIE-GMLTYAD 157
                      44555544442444455579999999999999******444323...24458*******************************999.9****** PP

  Acetyltransf_10  95 pyavpfYeklGFkavgeeqee 115
                      ++av++++k+GFk+   ++ e
       KOO25080.1 158 NHAVGYFRKQGFKKQVTMKRE 178
                      *************98666655 PP

>> Acetyltransf_1  Acetyltransferase (GNAT) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.3   0.0     3e-14   7.6e-11      34     117 .]      91     169 ..      61     169 .. 0.85

  Alignments for each domain:
  == domain 1  score: 42.3 bits;  conditional E-value: 3e-14
                     EEEEEEETTEEEEEEEEEEEETTSTTEEEEEEEEESGGGTTSSHHHHHHHHHHHHHHHTTESEEEEEEETTEHHHHHHHHHTTE CS
  Acetyltransf_1  34 gllvaeedgeliGfisllkipdekggvayieslaVspeyrgkGlGsaLlealeerareegikkivlaveedndaairlYeklGF 117
                       lv+ + ge++G i+++++    ++ a+i ++aVs +++ +G+G++ ++++ e++++ +i+  +l + +dn +a+++++k GF
      KOO25080.1  91 VSLVCTFRGEVVGGITYRPVMS--QRMAEIVFCAVSAKHQVQGYGTRIMNQIKEQCKRDNIEG-ML-TYADN-HAVGYFRKQGF 169
                     55667899************99..8************************************99.88.66676.99****88**9 PP

>> Acetyltransf_7  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.4   0.1   1.5e-10   3.8e-07       6      76 .]      93     171 ..      82     171 .. 0.75

  Alignments for each domain:
  == domain 1  score: 30.4 bits;  conditional E-value: 1.5e-10
                     EEEEETTEEEEEEEEEEES....TCTEEEEE-GGGTTSSHHHHHHHHTTSEEE...EE..EEEETHHHHHHHHHHTTEEE CS
  Acetyltransf_7   6 fVaeddgkivGfialslld....aeitrlaVdpeyrgkGiGraLleaaekgii...le..qlelnaekaikfYeklGFee 76 
                     +V+   g++vG i + ++     aei + aV+ +++ +G+G+++++ ++++++   +e   ++ ++ +a+++++k GF++
      KOO25080.1  93 LVCTFRGEVVGGITYRPVMsqrmAEIVFCAVSAKHQVQGYGTRIMNQIKEQCKrdnIEgmLTYADN-HAVGYFRKQGFKK 171
                     4566669999*9999999899888888899****************73333333332222235544.8**********95 PP

>> RestrictionSfiI  Type II restriction enzyme SfiI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.0   2.3e-05     0.059      62     159 ..     200     299 ..     190     307 .. 0.84

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 2.3e-05
  RestrictionSfiI  62 kvdykkaaylfl.PddnvdqallvdskaekdgersaatlqlsqssmvvkqkRagkevevkgilpllsktngk.kaltitlfvkyvYkllsgekk 153
                      ++dy  ++ +    +++v q +    +ae  +  +a++ ++   + vv +  a+++v  kg  p + +++ + +a+t+  +vk +Y+ +s +++
       KOO25080.1 200 TIDYLSTRQVAEqQRKAVVQKVSELERAEAGSGATASNRNVTSAAAVVGDLSAARDVLHKGWAPPVLEVRYRgEAQTVEQVVKTIYEAVSAHED 293
                      6888888877651566777888777899999888999***************************99887654279***************9999 PP

  RestrictionSfiI 154 gqlLks 159
                      + + k+
       KOO25080.1 294 AWPFKQ 299
                      877766 PP

>> Acetyltransf_9  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   3.8e-05     0.098      72     126 ..     114     170 ..      51     171 .. 0.83

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 3.8e-05
                     EEEEEEEEEE-CCGTTS-HHHHHHHHHHHHHHHTT--EEEE--..SSHHHHHTTT-E CS
  Acetyltransf_9  72 kaagvtgVavapehrgrgvlskLlaraleemreegqplsllfP..ssipiYrrfGye 126
                     ++a ++  av ++h+ +g+ ++++++  e+++ ++++  l ++   +++++r+ G++
      KOO25080.1 114 RMAEIVFCAVSAKHQVQGYGTRIMNQIKEQCKRDNIEGMLTYAdnHAVGYFRKQGFK 170
                     7999**************************************987668889999986 PP

>> FR47  FR47-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   4.4e-05      0.11      20      81 ..     114     173 ..     103     180 .. 0.83

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 4.4e-05
                 TTSSEEEEEE-GGG-SSSHHHHHHHHHHHHHHHS-S-EEEEEETT-HHHHHHHHHHT-EEEE CS
        FR47  20 dggelgalqvlpehrrrGlgsrlvkalakeiaergktvllvvvasNtpsirlyeklGfekie 81 
                  + e+    v  +h+ +G+g+r+ +++ ++  + +++ +l    +++ +   + k Gf+k  
  KOO25080.1 114 RMAEIVFCAVSAKHQVQGYGTRIMNQIKEQCKRDNIEGMLT--YADNHAVGYFRKQGFKKQV 173
                 56788889999*******************99988888775..467899*********9983 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (388 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       711  (0.0396564); expected 358.6 (0.02)
Passed bias filter:                      524  (0.0292264); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.48u 0.24s 00:00:00.72 Elapsed: 00:00:00.38
# Mc/sec: 3054.45
//
Query:       KOO25081.1  [L=306]
Description: hypothetical protein Ctob_007137 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
  ------ inclusion threshold ------
      0.023   14.3   1.8      0.043   13.4   1.8    1.5  1  PP2C_2         Protein phosphatase 2C
       0.03   14.9   1.8      0.066   13.8   1.8    1.5  1  Ribosomal_60s  60s Acidic ribosomal protein


Domain annotation for each model (and alignments):
>> PP2C_2  Protein phosphatase 2C
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   1.8   4.8e-06     0.043      16      73 ..      85     143 ..      66     170 .. 0.82

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 4.8e-06
      PP2C_2  16 la.vwtdsggsllaVaDGaGSakrSerGariaveavvealaelleseeeeeeallrale 73 
                  a ++++s+++ la aDG+ S + S    r+av++++++la+ ++ +++ +e+++ +le
  KOO25081.1  85 AApATSTSAARALAAADGHASSPPSSSHGRVAVRVAAHTLAHPFRLAWAHREHMAAELE 143
                 4456788899999********98777778999999999999999888888777777766 PP

>> Ribosomal_60s  60s Acidic ribosomal protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   1.8   7.3e-06     0.066      22      67 ..      56     101 ..      42     110 .. 0.85

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 7.3e-06
                    XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
  Ribosomal_60s  22 rvkllvkalegkdieellangaaklaaaaaaaaaaaaaaaaaaaae 67 
                    +++++v+  eg+  ++ l + +a+++aaaaa+a +  aa a aaa+
     KOO25081.1  56 MIEAVVDVNEGHAYQDRLRQWRASACAAAAAPATSTSAARALAAAD 101
                    78999*******************8888888888887777777775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (306 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       478  (0.0266607); expected 358.6 (0.02)
Passed bias filter:                      310  (0.0172904); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.41u 0.21s 00:00:00.62 Elapsed: 00:00:00.36
# Mc/sec: 2576.14
//
Query:       KOO25082.1  [L=283]
Description: methylenetetrahydrofolate reductase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.1e-35  121.5   0.0      6e-35  121.0   0.0    1.1  1  MTHFR     Methylenetetrahydrofolate reductase


Domain annotation for each model (and alignments):
>> MTHFR  Methylenetetrahydrofolate reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  121.0   0.0   3.3e-39     6e-35      12     278 ..      10     267 ..       6     273 .. 0.92

  Alignments for each domain:
  == domain 1  score: 121.0 bits;  conditional E-value: 3.3e-39
                 EEEEEE---SSHHHHHHHHHHHHHHGGGG-SEEEE---CCCTTHHHHHHHHHHHHHHH-S-EEEEEESTTS-HHHHHHHHHHHHHCT--EEEEE--S-- CS
       MTHFR  12 lisfEffpPkteegernLleridrleevkplfvdvTwgaggstaeltssiakviqqelgleailhlTctdaskeeldkalekakelGirnilALrGDpp 110
                  +s+E f P+ ++g + Ll +  rl+++++l+ ++    g       ++i + +++++ +   +++   ++++ ++++ l++a  +G+r++l L G p 
  KOO25082.1  10 SLSLEIFTPRSTKGIDDLLASGGRLAAYAALGPSLVSVNG-----PGLQILEHVRATHSIRPQMQISRPEVTLDSIESMLDSAMGVGVRDVLILGGQPG 103
                 579******************9999988866655543333.....4689***********************************************965 PP

                 TT-GGC---S----SHHHHHHHHHHHHCGGSEEEEEE-TT--T.T-S-HHHHHHHHHHHHHCT--EEEEEE-S-HHHHHHHHHHHHHCT-SS-EEEEE- CS
       MTHFR 111 kdedkweekeeefkyaldLvrlireeygdlfdigvaaYPevhp.eaksleadlkylkeKvdaGAdfiitQlffdvdkflkfveqvreagidipiipgim 208
                 +      + ++ f+ +ldLvr i+e+ g+ + ++v +YP + + e  +++adl+ l   v aGA+ +++   fd+++  +f  + r+ag+ +pi+pg++
  KOO25082.1 104 QR-----TAPGAFSSVLDLVRCIKERCGERMRVSVCGYPRGACgELGEYDADLQALALQVAAGAELVVSLPCFDAETHSEFAADARAAGVRCPIVPGLL 197
                 55.....45778******************************98999**************************************************** PP

                 --SSH.HHHHHHHHHHT----HHHHCCCTCHCT-HHHHHHHHHHHHHHHHHHHHHCT--EEEEE-TT--HH CS
       MTHFR 209 piksy.kslkrlaklskvkiPqelldrleeikdddeavkkigielavemvkkllaegvkglHlytlnkeka 278
                 p+ s+ + ++r+ +   v++P++l d+l  + +  e+  +++  l ++++++l  +g +  H+ytln ++ 
  KOO25082.1 198 PVGSVaADFRRICRAIAVEVPKWLDDQLL-ATSTSELLASLSDTLLIKQLRQLRLQGAEPPHVYTLNAAEI 267
                 **997257********************9.7889999******************************9875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (283 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       242  (0.0134977); expected 358.6 (0.02)
Passed bias filter:                      223  (0.0124379); expected 358.6 (0.02)
Passed Vit filter:                        12  (0.000669307); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.22s 00:00:00.68 Elapsed: 00:00:00.42
# Mc/sec: 2044.71
//
Query:       KOO25083.1  [L=109]
Description: 2-dehydropantoate 2-reductase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.5e-13   51.0   0.0    2.1e-13   50.5   0.0    1.2  1  ApbA_C    Ketopantoate reductase PanE/ApbA C terminal
  ------ inclusion threshold ------
      0.056   13.6   0.0      0.066   13.3   0.0    1.2  1  DUF5597   Domain of unknown function (DUF5597)
        0.1   12.6   0.0       0.13   12.2   0.0    1.2  1  Orexin    Prepro-orexin


Domain annotation for each model (and alignments):
>> ApbA_C  Ketopantoate reductase PanE/ApbA C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.5   0.0   3.6e-17   2.1e-13      81     124 ..       1      44 [.       1      45 [. 0.97

  Alignments for each domain:
  == domain 1  score: 50.5 bits;  conditional E-value: 3.6e-17
      ApbA_C  81 MlqDveagrktEidyinGavvklAeklgvetPvnellyellkal 124
                 M  D+ ++r+tEi+y+nG++v+l++k+gv+tP n  lyel++a 
  KOO25083.1   1 MWSDLHYRRPTEIEYLNGEIVALGKKAGVPTPLNSRLYELVRAA 44 
                 999**************************************986 PP

>> DUF5597  Domain of unknown function (DUF5597)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.0   1.1e-05     0.066      41      92 ..      57     108 ..      34     109 .] 0.85

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 1.1e-05
     DUF5597  41 gdweltvrygfpqfwdeaapgseepegggliiqlgedefllaGigvrvtfks 92 
                 +++ ++v+ +f + +++ a g+   +  +li+  ++  fl++G g+++ f++
  KOO25083.1  57 EAIAAHVEVSFAKGGGAGAGGGGGDSLEALIFYAAPALFLVVGVGLAMYFRT 108
                 56677788888877999*******************************9986 PP

>> Orexin  Prepro-orexin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   2.1e-05      0.13      60      92 ..      18      50 ..      12      71 .. 0.87

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 2.1e-05
      Orexin 60 aGiltlGkrragppalqgrlqrllqasGnhaaG 92
                + i++lGk+  +p  l++rl+ l++a+    +G
  KOO25083.1 18 GEIVALGKKAGVPTPLNSRLYELVRAAEAANTG 50
                56999********************98877776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (109 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       289  (0.0161191); expected 358.6 (0.02)
Passed bias filter:                      216  (0.0120475); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.34u 0.24s 00:00:00.58 Elapsed: 00:00:00.39
# Mc/sec: 847.68
//
Query:       KOO25084.1  [L=600]
Description: calmodulin-like protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      5e-24   82.0  19.1    7.5e-05   22.0   0.4    6.6  6  EF-hand_1  EF hand
    8.9e-22   77.3   7.6    2.7e-06   27.8   0.0    5.1  6  EF-hand_7  EF-hand domain pair
    9.4e-21   71.9  14.4    0.00011   21.8   0.4    6.6  6  EF-hand_6  EF-hand domain
      5e-09   35.9  13.1     0.0078   16.0   0.0    5.2  6  EF-hand_8  EF-hand domain pair
    1.3e-06   27.7  18.4      0.015   14.7   0.8    6.3  6  EF-hand_5  EF hand
  ------ inclusion threshold ------
       0.62   10.0   6.4        1.5    8.9   0.1    3.3  4  EF-hand_4  Cytoskeletal-regulatory complex EF hand


Domain annotation for each model (and alignments):
>> EF-hand_1  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.9   3.2e-06    0.0096       6      25 ..      23      42 ..      22      44 .. 0.94
   2 !   14.8   0.4     5e-06     0.015       1      22 [.      56      77 ..      56      80 .. 0.91
   3 !   22.0   0.4   2.5e-08   7.5e-05       2      28 ..      93     119 ..      92     120 .. 0.92
   4 !   10.6   0.1   0.00011      0.33       2      28 ..     204     230 ..     203     231 .. 0.90
   5 !   15.5   0.0     3e-06    0.0088       3      26 ..     241     264 ..     239     266 .. 0.90
   6 !   12.2   0.0   3.4e-05       0.1       3      26 ..     380     403 ..     378     404 .. 0.92

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 3.2e-06
                HHHHTTTSSSEEEHHHHHHH CS
   EF-hand_1  6 FrefDkDgdGkIdfeEfkel 25
                F+e+D Dgd  I ++Ef+e+
  KOO25084.1 23 FDEADADGDQEIGYDEFCEY 42
                99****************97 PP

  == domain 2  score: 14.8 bits;  conditional E-value: 5e-06
                HHHHHHHHHTTTSSSEEEHHHH CS
   EF-hand_1  1 elkeiFrefDkDgdGkIdfeEf 22
                +lke ++++D DgdG+I ++E+
  KOO25084.1 56 DLKEWWALMDIDGDGFIRKDEY 77
                689**************99996 PP

  == domain 3  score: 22.0 bits;  conditional E-value: 2.5e-08
                 HHHHHHHHTTTSSSEEEHHHHHHHHHH CS
   EF-hand_1   2 lkeiFrefDkDgdGkIdfeEfkellkk 28 
                 ++ iF+efDkDg+G +d  Ef ++l++
  KOO25084.1  93 INAIFAEFDKDGSGNLDEIEFEQALET 119
                 679********************9986 PP

  == domain 4  score: 10.6 bits;  conditional E-value: 0.00011
                 HHHHHHHHTTTSSSEEEHHHHHHHHHH CS
   EF-hand_1   2 lkeiFrefDkDgdGkIdfeEfkellkk 28 
                 l ++F+ +D Dg+  +++ E+k+++ +
  KOO25084.1 204 LSNLFQQLDDDGSFSLTLAELKDAFWE 230
                 5689*******************9875 PP

  == domain 5  score: 15.5 bits;  conditional E-value: 3e-06
                 HHHHHHHTTTSSSEEEHHHHHHHH CS
   EF-hand_1   3 keiFrefDkDgdGkIdfeEfkell 26 
                  eiF+ +D+Dg+Gk  f+Ef +++
  KOO25084.1 241 GEIFSSLDQDGSGKAGFDEFNAWV 264
                 59******************8876 PP

  == domain 6  score: 12.2 bits;  conditional E-value: 3.4e-05
                 HHHHHHHTTTSSSEEEHHHHHHHH CS
   EF-hand_1   3 keiFrefDkDgdGkIdfeEfkell 26 
                  e+F+++Dk gd  I   E+++++
  KOO25084.1 380 HEAFKMIDKSGDKAIGVAELCRWV 403
                 69*******************985 PP

>> EF-hand_7  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.5   0.4   2.6e-05     0.076      48      70 ..      21      43 ..       9      44 .. 0.85
   2 !   21.8   2.9   6.4e-08   0.00019       8      66 ..      23      77 ..      19      82 .. 0.85
   3 !   22.4   1.1   4.3e-08   0.00013       3      70 ..      56     117 ..      54     118 .. 0.78
   4 !   11.0   0.1   0.00015      0.46       5      30 ..      94     119 ..      90     143 .. 0.75
   5 !   27.8   0.0   8.9e-10   2.7e-06       5      70 ..     205     264 ..     202     265 .. 0.93
   6 !   12.0   0.0   7.4e-05      0.22      43      69 ..     376     402 ..     349     422 .. 0.62

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 2.6e-05
   EF-hand_7 48 llfkefDtdkdGvisfdEFlkly 70
                l f+e D d+d +i +dEF++++
  KOO25084.1 21 LEFDEADADGDQEIGYDEFCEYI 43
                679*****************986 PP

  == domain 2  score: 21.8 bits;  conditional E-value: 6.4e-08
   EF-hand_7  8 FkelDtdgdgyldkeellrllrkifqgagegsklsdeelellfkefDtdkdGvisfdEF 66
                F+e D dgd  + ++e+ +++      + +g   +d  l++++  +D d+dG i  dE+
  KOO25084.1 23 FDEADADGDQEIGYDEFCEYILP----KVRGARHTDADLKEWWALMDIDGDGFIRKDEY 77
                ****************8874443....26666669999********************9 PP

  == domain 3  score: 22.4 bits;  conditional E-value: 4.3e-08
   EF-hand_7   3 klkeaFkelDtdgdgyldkee.llrllrkifqgagegsklsdeelellfkefDtdkdGvisfdEFlkly 70 
                 +lke + ++D dgdg+++k+e +l  ++ + ++ +++   s   + ++f efD+d++G ++  EF+++ 
  KOO25084.1  56 DLKEWWALMDIDGDGFIRKDEyFL--YT-LCAA-SRKAG-SG--INAIFAEFDKDGSGNLDEIEFEQAL 117
                 68888999*************655..43.2211.33333.44..99*******************9985 PP

  == domain 4  score: 11.0 bits;  conditional E-value: 0.00015
   EF-hand_7   5 keaFkelDtdgdgyldkeellrllrk 30 
                   +F e+D+dg+g ld+ e++++l+ 
  KOO25084.1  94 NAIFAEFDKDGSGNLDEIEFEQALET 119
                 55688888888888888888777765 PP

  == domain 5  score: 27.8 bits;  conditional E-value: 8.9e-10
   EF-hand_7   5 keaFkelDtdgdgyldkeellrllrkifqgagegsklsdeelellfkefDtdkdGvisfdEFlkly 70 
                    F++lD dg+++l+ +el++++       + g    +e + ++f  +D+d++G+  fdEF +++
  KOO25084.1 205 SNLFQQLDDDGSFSLTLAELKDAFW------ELGYTGKPEVVGEIFSSLDQDGSGKAGFDEFNAWV 264
                 568*******************998......9999999999*********************9986 PP

  == domain 6  score: 12.0 bits;  conditional E-value: 7.4e-05
   EF-hand_7  43 deelellfkefDtdkdGvisfdEFlkl 69 
                 +++  + fk++D+++d  i   E++++
  KOO25084.1 376 RDAAHEAFKMIDKSGDKAIGVAELCRW 402
                 555555555555555555555555554 PP

>> EF-hand_6  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.8   0.1    0.0011       3.4       6      24 ..      23      41 ..      22      48 .. 0.90
   2 !    9.7   0.3    0.0003      0.89       2      21 ..      57      76 ..      56      78 .. 0.92
   3 !   21.8   0.4   3.8e-08   0.00011       2      28 ..      93     119 ..      92     124 .. 0.90
   4 !   11.8   0.3   5.9e-05      0.18       4      26 ..     206     228 ..     203     228 .. 0.91
   5 !   11.3   0.0   8.9e-05      0.26       4      25 ..     242     263 ..     239     266 .. 0.91
   6 !   13.7   0.0   1.5e-05     0.044       3      25 ..     380     402 ..     378     409 .. 0.90

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 0.0011
   EF-hand_6  6 FklfDkdgdGkidaeElrk 24
                F++ D dgd +i ++E+  
  KOO25084.1 23 FDEADADGDQEIGYDEFCE 41
                9999*************76 PP

  == domain 2  score: 9.7 bits;  conditional E-value: 0.0003
   EF-hand_6  2 lreaFklfDkdgdGkidaeE 21
                l+e + l+D dgdG+i ++E
  KOO25084.1 57 LKEWWALMDIDGDGFIRKDE 76
                88999***********9998 PP

  == domain 3  score: 21.8 bits;  conditional E-value: 3.8e-08
   EF-hand_6   2 lreaFklfDkdgdGkidaeElrkalrk 28 
                 ++++F +fDkdg+G +d  E+ +al +
  KOO25084.1  93 INAIFAEFDKDGSGNLDEIEFEQALET 119
                 689**********************94 PP

  == domain 4  score: 11.8 bits;  conditional E-value: 5.9e-05
   EF-hand_6   4 eaFklfDkdgdGkidaeElrkal 26 
                  +F+++D dg+ +++ +El++a+
  KOO25084.1 206 NLFQQLDDDGSFSLTLAELKDAF 228
                 69******************986 PP

  == domain 5  score: 11.3 bits;  conditional E-value: 8.9e-05
   EF-hand_6   4 eaFklfDkdgdGkidaeElrka 25 
                 e+F  +D+dg+Gk  ++E+ ++
  KOO25084.1 242 EIFSSLDQDGSGKAGFDEFNAW 263
                 89*****************987 PP

  == domain 6  score: 13.7 bits;  conditional E-value: 1.5e-05
   EF-hand_6   3 reaFklfDkdgdGkidaeElrka 25 
                 +eaFk++Dk+gd  i  +El ++
  KOO25084.1 380 HEAFKMIDKSGDKAIGVAELCRW 402
                 79******************887 PP

>> EF-hand_8  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.9   0.5   0.00011      0.33      32      51 ..      23      42 ..      21      44 .. 0.94
   2 ?    4.4   0.2     0.011        33      34      49 ..      63      78 ..      62      81 .. 0.90
   3 !    9.5   0.1    0.0003      0.88      28      51 ..      93     116 ..      91     119 .. 0.87
   4 ?   -0.8   0.1      0.49   1.5e+03      30      50 ..     206     226 ..     204     228 .. 0.79
   5 !   16.0   0.0   2.6e-06    0.0078       5      48 ..     219     260 ..     216     262 .. 0.92
   6 ?   -1.7   0.0      0.91   2.7e+03      27      49 ..     378     400 ..     374     402 .. 0.85

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00011
   EF-hand_8 32 frefDtdgdGkisfeEFcvl 51
                f+e+D dgd  i+++EFc++
  KOO25084.1 23 FDEADADGDQEIGYDEFCEY 42
                9*****************87 PP

  == domain 2  score: 4.4 bits;  conditional E-value: 0.011
   EF-hand_8 34 efDtdgdGkisfeEFc 49
                ++D+dgdG i ++E++
  KOO25084.1 63 LMDIDGDGFIRKDEYF 78
                59***********986 PP

  == domain 3  score: 9.5 bits;  conditional E-value: 0.0003
   EF-hand_8  28 vdilfrefDtdgdGkisfeEFcvl 51 
                 + ++f efD dg+G ++  EF + 
  KOO25084.1  93 INAIFAEFDKDGSGNLDEIEFEQA 116
                 5789*****************655 PP

  == domain 4  score: -0.8 bits;  conditional E-value: 0.49
   EF-hand_8  30 ilfrefDtdgdGkisfeEFcv 50 
                  lf  +D dg+  +++ E  +
  KOO25084.1 206 NLFQQLDDDGSFSLTLAELKD 226
                 699999***998888888765 PP

  == domain 5  score: 16.0 bits;  conditional E-value: 2.6e-06
   EF-hand_8   5 Itreelrril.rilglkkglseeevdilfrefDtdgdGkisfeEF 48 
                 +t +el+++    lg+     +e v ++f+ +D+dg+Gk +f+EF
  KOO25084.1 219 LTLAELKDAFwE-LGYT--GKPEVVGEIFSSLDQDGSGKAGFDEF 260
                 688999999955.59**..*************************9 PP

  == domain 6  score: -1.7 bits;  conditional E-value: 0.91
   EF-hand_8  27 evdilfrefDtdgdGkisfeEFc 49 
                 ++++ f+ +D  gd +i+  E c
  KOO25084.1 378 AAHEAFKMIDKSGDKAIGVAELC 400
                 56788999999999999999988 PP

>> EF-hand_5  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.5   0.4     0.038   1.1e+02       5      13 ..      23      31 ..      20      39 .. 0.88
   2 !    7.0   0.0    0.0014       4.3       8      20 ..      64      76 ..      58      82 .. 0.86
   3 !   14.7   0.8   5.1e-06     0.015       1      23 [.      93     115 ..      93     117 .. 0.91
   4 ?    3.9   0.2     0.014        41       4      13 ..     207     216 ..     204     228 .. 0.77
   5 !    5.5   0.1    0.0043        13       4      22 ..     243     261 ..     240     265 .. 0.82
   6 ?    1.6   0.0     0.073   2.2e+02       4      13 ..     382     391 ..     380     398 .. 0.91

  Alignments for each domain:
  == domain 1  score: 2.5 bits;  conditional E-value: 0.038
                HHHH-SS-S CS
   EF-hand_5  5 FqaiDlNgD 13
                F+++D++gD
  KOO25084.1 23 FDEADADGD 31
                9*******9 PP

  == domain 2  score: 7.0 bits;  conditional E-value: 0.0014
                H-SS-SSCE-HHH CS
   EF-hand_5  8 iDlNgDGkIskeE 20
                +D +gDG+I k+E
  KOO25084.1 64 MDIDGDGFIRKDE 76
                8********7777 PP

  == domain 3  score: 14.7 bits;  conditional E-value: 5.1e-06
                 HHHHHHHH-SS-SSCE-HHHHHH CS
   EF-hand_5   1 lkdtFqaiDlNgDGkIskeELkt 23 
                 +++ F ++D++g+G ++  E+++
  KOO25084.1  93 INAIFAEFDKDGSGNLDEIEFEQ 115
                 7899*****************87 PP

  == domain 4  score: 3.9 bits;  conditional E-value: 0.014
                 HHHHH-SS-S CS
   EF-hand_5   4 tFqaiDlNgD 13 
                 +Fq++D +g+
  KOO25084.1 207 LFQQLDDDGS 216
                 7********8 PP

  == domain 5  score: 5.5 bits;  conditional E-value: 0.0043
                 HHHHH-SS-SSCE-HHHHH CS
   EF-hand_5   4 tFqaiDlNgDGkIskeELk 22 
                  F+ +D +g+Gk  ++E+ 
  KOO25084.1 243 IFSSLDQDGSGKAGFDEFN 261
                 6999*******97777775 PP

  == domain 6  score: 1.6 bits;  conditional E-value: 0.073
                 HHHHH-SS-S CS
   EF-hand_5   4 tFqaiDlNgD 13 
                 +F++iD+ gD
  KOO25084.1 382 AFKMIDKSGD 391
                 5******999 PP

>> EF-hand_4  Cytoskeletal-regulatory complex EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.1   0.3     0.031        92      49      66 ..      23      40 ..      12      45 .. 0.85
   2 ?    8.9   0.1   0.00049       1.5      35      66 ..      47      78 ..      41      86 .. 0.84
   3 ?   -2.3   0.0       1.5   4.4e+03      41      65 ..      89     113 ..      79     119 .. 0.71
   4 ?   -1.9   0.0       1.1   3.2e+03      47      66 ..     242     261 ..     236     264 .. 0.76

  Alignments for each domain:
  == domain 1  score: 3.1 bits;  conditional E-value: 0.031
   EF-hand_4 49 wdladidedgkldfeefc 66
                +d ad d d ++ ++efc
  KOO25084.1 23 FDEADADGDQEIGYDEFC 40
                5779*************9 PP

  == domain 2  score: 8.9 bits;  conditional E-value: 0.00049
   EF-hand_4 35 lknskleedklekiwdladidedgkldfeefc 66
                ++ ++ ++  l++ w l did dg +  +e+ 
  KOO25084.1 47 VRGARHTDADLKEWWALMDIDGDGFIRKDEYF 78
                5667888999**************99998875 PP

  == domain 3  score: -2.3 bits;  conditional E-value: 1.5
   EF-hand_4  41 eedklekiwdladidedgkldfeef 65 
                   + ++ i+   d d  g+ld  ef
  KOO25084.1  89 AGSGINAIFAEFDKDGSGNLDEIEF 113
                 5556677777778888888887777 PP

  == domain 4  score: -1.9 bits;  conditional E-value: 1.1
   EF-hand_4  47 kiwdladidedgkldfeefc 66 
                 +i++  d d  gk  f+ef 
  KOO25084.1 242 EIFSSLDQDGSGKAGFDEFN 261
                 56666778888899999995 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (600 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       431  (0.0240393); expected 358.6 (0.02)
Passed bias filter:                      387  (0.0215851); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.54u 0.27s 00:00:00.81 Elapsed: 00:00:00.41
# Mc/sec: 4376.11
//
Query:       KOO25085.1  [L=524]
Description: zinc carboxypeptidase family protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    8.2e-23   81.6   0.0    1.9e-22   80.4   0.0    1.5  1  Peptidase_M14  Zinc carboxypeptidase
     0.0001   21.5   0.0    0.00016   20.9   0.0    1.3  1  AstE_AspA      Succinylglutamate desuccinylase / Aspartoacyla


Domain annotation for each model (and alignments):
>> Peptidase_M14  Zinc carboxypeptidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   80.4   0.0   2.1e-26   1.9e-22      31     256 ..      56     256 ..      48     276 .. 0.83

  Alignments for each domain:
  == domain 1  score: 80.4 bits;  conditional E-value: 2.1e-26
                    EEEEE-SSTT.STTST-CEEEEEE-SSTT-HHHHHHHHHHHHHHHHHTTTSHHHHHHHHHEEEEEES-STHHHHHHHHHT-TTTTST-SBCTTSSS CS
  Peptidase_M14  31 kvlkisssat.eaeegkpvvlidggiHarEwigsalllylleqLlsaYgedeeikellddtdiyilpvlNPDGyeysstedrlwrknrsnakessc 125
                    ++l+i++ +  ++e  +p+++i+g +H++E ig++++l l + L+++Y++d+ +++l+d+  i+++p+ N  G+e  +         r ++     
     KOO25085.1  56 YILEITNRSSlAHELDRPEIFISGALHGDERIGPSTALALSRWLIERYDTDPWMRRLVDQRIILVMPMTNAIGVEQRR---------R-DEL---- 137
                    6799999988899**********************************************************9999766.........4.444.... PP

                    BS--GGGSSSSSTTSSSSBSSTTSTTBHHSSTT.SHHHHHHHHHHHHTTEEEEEEEEESSSEEEESHSSSS--...-SS-TTHHHHHHHHHHHHHH CS
  Peptidase_M14 126 eGvDlnRnFpdlwnsegastspcsetyrgpapfsepetravlefiqkknivlfidlhsysqvilypygstrde...ispppddeelkslarkyaea 218
                     G+D+nR+Fp+      +  s c +t            r++ e+ + + ++l++++h+++q+i y +gs +       ++pdd   +++a+++++ 
     KOO25085.1 138 -GIDPNRDFPYD-----QVPSACMQT---------VTARSINELYRARLLQLVVTFHGGMQAIAYNWGSFNYYqskPHRSPDDVSQRQVAEQMSKF 218
                    .9********99.....456677777.........78999999*************************4443333367788888889999988888 PP

                    HCHTTTTEE...E.-EEEEEHHHHT---SS-HHHHHHHHTT- CS
  Peptidase_M14 219 lqkmvrgte...y.lsegitngaliyeasggmddwayertgv 256
                     ++  ++t+   y ++   t  +l y++ ggm+dw y ++ +
     KOO25085.1 219 AGTGGSRTRntkYlFK---TMNDLVYPVHGGMEDWGY-AASW 256
                    8886664443236333...45667***********99.4444 PP

>> AstE_AspA  Succinylglutamate desuccinylase / Aspartoacylase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.9   0.0   1.8e-08   0.00016       3     113 ..      73     185 ..      71     202 .. 0.82

  Alignments for each domain:
  == domain 1  score: 20.9 bits;  conditional E-value: 1.8e-08
                 -EEEEEE-SSTT-HHHHHHHHHHHHHHHCCC..........ESCCEEEEEESSHHHHHCTSSSSSTT-S-CTTTTTCCCCCSSTCHHHHHHHHHHHHHH CS
   AstE_AspA   3 pkvlisAGvHGnElaGvellrqllkqleead..........ilgeitlvplaNppAiaagsRyipidredLNRaFpgrslgrsldealrateaerlada 91 
                 p ++is+++HG+E  G+ ++  l ++l e              + i+++p+ N +++++ +R       d NR Fp +++     +a+ +t++ r  ++
  KOO25085.1  73 PEIFISGALHGDERIGPSTALALSRWLIERYdtdpwmrrlvDQRIILVMPMTNAIGVEQRRRDEL--GIDPNRDFPYDQVP----SACMQTVTARSINE 165
                 7899*************998888888877766667877763345556679*********999988..99**********99....88999998888888 PP

                 HCHCTCCCGCEEEEEEEESSTB CS
   AstE_AspA  92 lfaaalpeadivlDLHtgtrgl 113
                 l +a l   ++v+ +H g+++ 
  KOO25085.1 166 LYRARL--LQLVVTFHGGMQAI 185
                 887775..78888888777665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (524 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       528  (0.0294495); expected 358.6 (0.02)
Passed bias filter:                      408  (0.0227564); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.53u 0.29s 00:00:00.82 Elapsed: 00:00:00.44
# Mc/sec: 3589.84
//
Query:       KOO25086.1  [L=988]
Description: hypothetical protein Ctob_007140 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.012   16.1   1.0      0.012   16.1   1.0    1.7  2  DUF4231    Protein of unknown function (DUF4231)
      0.041   12.7   0.0      0.082   11.7   0.0    1.4  1  Otopetrin  Otopetrin
        0.1   11.8   0.0       0.24   10.6   0.0    1.6  1  IF-2B      Initiation factor 2 subunit family


Domain annotation for each model (and alignments):
>> DUF4231  Protein of unknown function (DUF4231)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   16.1   1.0   1.9e-06     0.012      12      98 ..     622     713 ..     614     716 .. 0.80
   2 ?   -3.4   0.1       2.4   1.4e+04      21      34 ..     857     870 ..     843     885 .. 0.56

  Alignments for each domain:
  == domain 1  score: 16.1 bits;  conditional E-value: 1.9e-06
     DUF4231  12 rakrrfrllrlitivlgallpilvs.....sklgagvsvlkiltallsalvailaaleeffrykerWrryRstaEsLktekwlflakagpYs 98 
                  + +r +++++++ +l+  +++l+         + g+ ++k+l +ll +++a+l  + +  r ++++   ++    + +e ++f +++  Y+
  KOO25086.1 622 MYSKRSWTMQFVLYFLALNTTLLSIlvsnyVVFAEGGFIWKFLMLLLPIITALLGTIGTRLRQQQKYAVSKMCGYEILSEIYKFRTRSMQYD 713
                 455555555555555555555555555565448899****************************************************9997 PP

  == domain 2  score: -3.4 bits;  conditional E-value: 2.4
     DUF4231  21 rlitivlgallpil 34 
                 ++++++l  +++++
  KOO25086.1 857 QMAALLLISIISVV 870
                 33333333333332 PP

>> Otopetrin  Otopetrin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   1.4e-05     0.082     220     265 ..     824     873 ..     777     885 .. 0.74

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 1.4e-05
   Otopetrin 220 daeeannesrrkdkrslrvdcsgsskGLflgl....LllvltiislilFf 265
                  ++e  ++  +++k++ + d+++s kG f+g+     ll+++iis+++F 
  KOO25086.1 824 LTREVVKKMAKERKQQDQEDMKHSIKGFFFGMlqmaALLLISIISVVIFG 873
                 4444444555666688899*************6666588999****9995 PP

>> IF-2B  Initiation factor 2 subunit family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0     4e-05      0.24     117     156 ..     243     283 ..     204     289 .. 0.79

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 4e-05
                 -SHHHHHHHHHHHTTEEEEEEEEEXTTTTHH.HTHHHHHHH CS
       IF-2B 117 sktvlevlraaakekkkfkVivvEsrPrlqG.rltakeLvq 156
                 ++  lev   a   +k++ V+v++srPrl+  + +++eL +
  KOO25086.1 243 AELMLEVALRASPVNKELVVLVMDSRPRLEKaNNMLQELID 283
                 334899999********************999999999865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (988 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       884  (0.0493056); expected 358.6 (0.02)
Passed bias filter:                      601  (0.0335211); expected 358.6 (0.02)
Passed Vit filter:                        55  (0.00306766); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.77u 0.28s 00:00:01.05 Elapsed: 00:00:00.44
# Mc/sec: 6782.31
//
Query:       KOO25087.1  [L=308]
Description: hypothetical protein Ctob_007141 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.052   12.9   0.1       0.11   11.9   0.0    1.5  1  LSDAT_euk  SLOG in TRPM


Domain annotation for each model (and alignments):
>> LSDAT_euk  SLOG in TRPM
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   6.1e-06      0.11      15      39 ..      86     110 ..      77     123 .. 0.82

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 6.1e-06
   LSDAT_euk  15 ilkllekewklelPkLvisvhGGak 39 
                  l +  k+w+le+P++ i+vhGG +
  KOO25087.1  86 WLLFAIKTWELEMPSMSITVHGGSQ 110
                 4567789****************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (308 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       264  (0.0147247); expected 358.6 (0.02)
Passed bias filter:                      244  (0.0136092); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.24s 00:00:00.67 Elapsed: 00:00:00.40
# Mc/sec: 2286.87
//
Query:       KOO25088.1  [L=125]
Description: exosome complex component rrp45-like protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.4e-10   41.8   0.6    1.9e-10   41.3   0.1    1.5  2  RNase_PH  3' exoribonuclease family, domain 1
  ------ inclusion threshold ------
      0.047   13.5   0.1      0.064   13.1   0.1    1.3  1  VirB8     VirB8 protein


Domain annotation for each model (and alignments):
>> RNase_PH  3' exoribonuclease family, domain 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.3   0.1   2.1e-14   1.9e-10      61     132 .]       2      79 ..       1      79 [. 0.92
   2 ?   -2.6   0.0      0.79   7.1e+03      67      67 ..     102     102 ..      84     119 .. 0.50

  Alignments for each domain:
  == domain 1  score: 41.3 bits;  conditional E-value: 2.1e-14
                 CEC-C...S...HHHHHHHHHHHHHHCCTC-C........CGCCTCEEEEEEEEEECCCS-CHHHCHHHHHHHHHCTCEE CS
    RNase_PH  61 asgerrregrpsdeeielsrlleralrpsill........ekkpkstididitvlssdggslldalinaaslALadagip 132
                 as++++  grp + ++e+srll+ralr s  +          k+ + ++ d+tv++++g +l da+  aa +AL + ++p
  KOO25088.1   2 ASPAFE-AGRPPEAAVEMSRLLDRALRMSQAIdveslcvvASKHVWSVRTDVTVIDDRG-NLTDAATFAALVALRHLRLP 79 
                 677774.49**********************99999999966668**************.****************9998 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 0.79
                 . CS
    RNase_PH  67 r 67 
                  
  KOO25088.1 102 T 102
                 2 PP

>> VirB8  VirB8 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.1   7.1e-06     0.064     141     188 ..      30      78 ..      15     104 .. 0.85

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 7.1e-06
                 .EEEEEEE.EEEETTEEEEEEEEEEE.ETTS--EEEEEEEEEEEE...E CS
       VirB8 141 veveiksv.vlaspntaqvrfkettrredgtlaktkrwtatltfryevk 188
                  ++++ s  v+as+ ++ vr + t+ + +g+l+++ ++ a++++r   +
  KOO25088.1  30 QAIDVESLcVVASKHVWSVRTDVTVIDDRGNLTDAATFAALVALRHLRL 78 
                 478999**999********************************986643 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (125 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       783  (0.0436723); expected 358.6 (0.02)
Passed bias filter:                      516  (0.0287802); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.41u 0.25s 00:00:00.65 Elapsed: 00:00:00.41
# Mc/sec: 913.88
//
Query:       KOO25089.1  [L=122]
Description: nuclear transcription factor y subunit b6 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    5.9e-05   23.3   0.5     0.0001   22.5   0.5    1.4  1  CBFD_NFYB_HMF  Histone-like transcription factor (CBF/NF-Y) a


Domain annotation for each model (and alignments):
>> CBFD_NFYB_HMF  Histone-like transcription factor (CBF/NF-Y) and archaeal histone
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.5   0.5   5.8e-09    0.0001      16      59 ..       6      49 ..       1      54 [. 0.90

  Alignments for each domain:
  == domain 1  score: 22.5 bits;  conditional E-value: 5.8e-09
                   TTXS-B-HHHHHHHHHHHHHHHHHHHHHHHHHHCCTTSSCE-HH CS
  CBFD_NFYB_HMF 16 pdarkiakdAkeliaecveefieelaseAaeickkekrKtikae 59
                   p   ki+k+Ake + e+++e   +++ eAa ++ +e+++ i+ae
     KOO25089.1  6 PAGTKISKEAKEAMCEMAVELTAFVSMEAAMLAAHESSRSISAE 49
                   56679************************************998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (122 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       432  (0.024095); expected 358.6 (0.02)
Passed bias filter:                      342  (0.0190752); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.35u 0.24s 00:00:00.59 Elapsed: 00:00:00.39
# Mc/sec: 949.98
//
Query:       KOO25090.1  [L=161]
Description: hypothetical protein Ctob_002417 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.3e-05   25.3   0.0    2.1e-05   24.7   0.0    1.3  1  CBFD_NFYB_HMF  Histone-like transcription factor (CBF/NF-Y) a
  ------ inclusion threshold ------
      0.054   13.8   0.0      0.079   13.3   0.0    1.3  1  Histone        Core histone H2A/H2B/H3/H4


Domain annotation for each model (and alignments):
>> CBFD_NFYB_HMF  Histone-like transcription factor (CBF/NF-Y) and archaeal histone
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.7   0.0   2.3e-09   2.1e-05       2      61 ..      95     158 ..      94     160 .. 0.79

  Alignments for each domain:
  == domain 1  score: 24.7 bits;  conditional E-value: 2.3e-09
                    XXXHHHHHHHHHCC.TTXS-..B-HHHHHHHHHHHHHHHHHHHHHHH.HHHCCTTSSCE-HHHH CS
  CBFD_NFYB_HMF   2 eLPiarvkkImksd.pdark..iakdAkeliaecveefieelaseAa.eickkekrKtikaehi 61 
                    eLPi+  k++mk+d  ++    ++ +A +l+a   e+fi  +++ A+   +   kr t+   ++
     KOO25090.1  95 ELPISLTKRVMKQDaVNMHLrmVSAEAVDLMACGNELFIGLVTELAWhVSTLPGKRVTVDLRDL 158
                    8*************63332246*************************44455556667766666 PP

>> Histone  Core histone H2A/H2B/H3/H4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.0   8.8e-06     0.079      71     125 ..     101     159 ..      72     160 .. 0.80

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 8.8e-06
                 HHHHH....TTSSSXEEXHHHHHHHHHHHHHHHHHHHHHHHHHH.HHTTXSEEXHHHHH CS
     Histone  71 vreivk...sekedlrisaeavlalqealEallvelfeeAnlla.khaKRvTitpkDiq 125
                  + ++k    +    ++saeav++++   E ++  ++e+A+ ++    KRvT+  +D+q
  KOO25090.1 101 TKRVMKqdaVNMHLRMVSAEAVDLMACGNELFIGLVTELAWHVStLPGKRVTVDLRDLQ 159
                 56666644333444689************************9872579*********99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (161 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       363  (0.0202465); expected 358.6 (0.02)
Passed bias filter:                      310  (0.0172904); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.40u 0.29s 00:00:00.69 Elapsed: 00:00:00.43
# Mc/sec: 1118.69
//
Query:       KOO25091.1  [L=1291]
Description: hypothetical protein Ctob_002416 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1291 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1881  (0.104914); expected 358.6 (0.02)
Passed bias filter:                      447  (0.0249317); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 1.01u 0.31s 00:00:01.32 Elapsed: 00:00:00.48
# Mc/sec: 8104.12
//
Query:       KOO25092.1  [L=199]
Description: hypothetical protein Ctob_002415 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (199 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       300  (0.0167327); expected 358.6 (0.02)
Passed bias filter:                      205  (0.011434); expected 358.6 (0.02)
Passed Vit filter:                         9  (0.00050198); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.41u 0.25s 00:00:00.65 Elapsed: 00:00:00.41
# Mc/sec: 1439.46
//
Query:       KOO25093.1  [L=209]
Description: cathepsin b [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    4.4e-18   66.2   2.9    5.8e-18   65.8   2.9    1.1  1  Peptidase_C1  Papain family cysteine protease


Domain annotation for each model (and alignments):
>> Peptidase_C1  Papain family cysteine protease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.8   2.9   3.2e-22   5.8e-18       1      92 [.      88     182 ..      88     198 .. 0.86

  Alignments for each domain:
  == domain 1  score: 65.8 bits;  conditional E-value: 3.2e-22
                   STSCEETTT..TTTG..SG---B-TSSBTHHHHHHHHHHHHHHHHHHS.SS---B-HHHHHHHSTTTSTGGGBB-HHHHHHHHHHTEBEBTTTS--S CS
  Peptidase_C1   1 lpesvDwre..kgga..vtpvkdqgsCGsCWafsavgaledrlaiktk.kklvslSeqelvdCskeenegCnGGlmenafeyikkggivtekdypYk 92 
                   +pes+D  +  ++++  +  ++dq++CG+CWaf+  +a +dr++i+t+ + l+ lS+q++  C + + +gC GG  ++ + yi ++g+vt++ y+ +
    KOO25093.1  88 IPESFDSATfwPQCSksIGMIRDQSNCGCCWAFGGSEAASDRMCIATNaSMLFPLSDQDI--CFNANYNGCGGGQISTPWTYISSKGVVTGGLYKDS 182
                   69999999999666557*******************************999********9..7776678**********************887544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (209 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       451  (0.0251548); expected 358.6 (0.02)
Passed bias filter:                      325  (0.0181271); expected 358.6 (0.02)
Passed Vit filter:                        12  (0.000669307); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.23s 00:00:00.65 Elapsed: 00:00:00.39
# Mc/sec: 1593.26
//
Query:       KOO25094.1  [L=107]
Description: cathepsin b-like protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    8.1e-27   94.7   4.0    1.1e-26   94.4   4.0    1.1  1  Peptidase_C1    Papain family cysteine protease
     0.0037   16.1   1.4     0.0045   15.8   1.4    1.1  1  Peptidase_C1_2  Peptidase C1-like family


Domain annotation for each model (and alignments):
>> Peptidase_C1  Papain family cysteine protease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   94.4   4.0   1.2e-30   1.1e-26     131     215 ..       2      83 ..       1      85 [. 0.92

  Alignments for each domain:
  == domain 1  score: 94.4 bits;  conditional E-value: 1.2e-30
                   HHSSEEEEEECCSHHHHTEESSEESSTSCETSS-EEEEEEEEEEEETTEEEEEEE-SBTTTSTBTTEEEEESSSSTGGGTTSSEE CS
  Peptidase_C1 131 kngPvsvaidaseedfqlYksGvyketecsktelnhavlivGygvengkkyWivkNsWgtdwgekGYiriargknnecgieseav 215
                   + gPv+ a+++++ df+ Y sG+y++ + s ++  hav+ vG+gveng+kyW v+NsW+  wgekGY+ri+rg+n e gies+++
    KOO25094.1   2 EAGPVETAFTVYS-DFEDYDSGIYHHVSGS-MAGGHAVKFVGWGVENGVKYWKVQNSWNPFWGEKGYFRIVRGNN-EGGIESSVM 83 
                   67***********.6***********7544.588***************************************77.*****9986 PP

>> Peptidase_C1_2  Peptidase C1-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   1.4     5e-07    0.0045     360     396 ..      34      68 ..      18      73 .. 0.86

  Alignments for each domain:
  == domain 1  score: 15.8 bits;  conditional E-value: 5e-07
                     -EEEEEEEEEE-TTSSEEEEEEE-SBTTTSTBTTEEE CS
  Peptidase_C1_2 360 tHamvltgvdvdddgkvtkwkvEnsWGedsGekGyfv 396
                      Ha+ ++g  v  ++ v+ wkv nsW    GekGyf 
      KOO25094.1  34 GHAVKFVGWGV--ENGVKYWKVQNSWNPFWGEKGYFR 68 
                     69999**9999..566889****************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (107 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       222  (0.0123822); expected 358.6 (0.02)
Passed bias filter:                      145  (0.00808746); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.34u 0.20s 00:00:00.54 Elapsed: 00:00:00.35
# Mc/sec: 922.45
//
Query:       KOO25095.1  [L=723]
Description: disulfide isomerase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.5e-26   91.2   0.0    5.9e-21   74.4   0.0    4.2  4  Thioredoxin    Thioredoxin
    1.1e-14   54.8   0.0    1.8e-06   28.0   0.0    3.1  3  Thioredoxin_6  Thioredoxin-like domain
    7.3e-06   25.5   0.0     0.0043   16.5   0.0    2.9  3  OST3_OST6      OST3 / OST6 family, transporter family
     0.0014   18.9   0.0       0.89    9.9   0.0    3.3  3  Thioredoxin_8  Thioredoxin-like
     0.0024   18.3   3.6        1.3    9.5   0.0    4.2  4  Thioredoxin_2  Thioredoxin-like domain
      0.005   16.9   0.0       0.34   11.0   0.0    3.1  3  Thioredoxin_3  Thioredoxin domain
     0.0074   16.2   0.0      0.064   13.2   0.0    2.6  2  HyaE           Hydrogenase-1 expression protein HyaE
  ------ inclusion threshold ------
      0.039   13.9   0.0       0.15   12.0   0.0    2.0  1  AhpC-TSA       AhpC/TSA family
        0.1   12.8   0.0       0.37   11.0   0.0    2.0  1  Thioredoxin_7  Thioredoxin-like


Domain annotation for each model (and alignments):
>> Thioredoxin  Thioredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   74.4   0.0     3e-24   5.9e-21       3      91 ..      33     123 ..      31     137 .. 0.91
   2 ?    0.1   0.0       0.4     8e+02      41      81 ..     186     225 ..     181     246 .. 0.72
   3 !    9.4   0.0    0.0005         1      36      87 ..     380     430 ..     378     440 .. 0.81
   4 ?    0.5   0.0       0.3   6.1e+02      41      93 ..     509     565 ..     504     572 .. 0.75

  Alignments for each domain:
  == domain 1  score: 74.4 bits;  conditional E-value: 3e-24
                  EESSHHHHHHHHTT.TSSEEEEEEE-TTSHHHHCHHHHHHHHHHHCTTTSEEEEEETTTSHHHHHHTT-SSSSEEEEEETTE.EEEEEESS CS
  Thioredoxin   3 lvltkenFeeevak.ekklvlveFyApwCghCkalaPeleklaeelkdkvklakvdvdenedlakkyevegiPtlklfkngk.evkkyega 91 
                   +l ++nF+++v k +++l++ve+yA+wCghCk++a  ++k+ae+l++ vk+  v++de++++++  +v+g+P +kl+  g  + + y+g+
   KOO25095.1  33 TKLDDTNFDQTVIKdDRHLWVVEYYADWCGHCKQFAKGFQKAAENLAGIVKFGAVNADESKKTVQAAGVQGYPSVKLYLPGSgSRNPYTGK 123
                  57899*****9998577889**********************************************************9999666777775 PP

  == domain 2  score: 0.1 bits;  conditional E-value: 0.4
                  HHHHHHCTTTSEEEEEETTTSHHHHHHTT-SSSSEEEEEET CS
  Thioredoxin  41 eklaeelkdkvklakvdvdenedlakkyevegiPtlklfkn 81 
                  ++l+ +l++++ l +   ++ e+++++++v+ +P+++++++
   KOO25095.1 186 KSLSVQLQGRMLLGEARETA-EKTVAEFGVTDFPKVVVLPS 225
                  55555566555555555454.4677899******9988765 PP

  == domain 3  score: 9.4 bits;  conditional E-value: 0.0005
                  HHHHHHHHHHHCTTTSEEEEEETTTSHHHHHHTT-SSSSEEEEEETTEEEEE CS
  Thioredoxin  36 laPeleklaeelkdkvklakvdvdenedlakkyevegiPtlklfkngkevkk 87 
                  + P l +++  +++kv +    + e   lak+++v+  Ptl+++  g++v++
   KOO25095.1 380 IPPLLRAISLSFEGKVAFGMAQASEA-ALAKRFNVQKAPTLLVMFPGDKVDE 430
                  56778888888888888887777665.9***************999998776 PP

  == domain 4  score: 0.5 bits;  conditional E-value: 0.3
                  HHHHHHCTT.TSEEEEEETTTSHHHHHHTT-SS..SSEEEEEETTE.EEEEEESS-H CS
  Thioredoxin  41 eklaeelkd.kvklakvdvdenedlakkyeveg..iPtlklfkngk.evkkyegare 93 
                  +kl+++ ++  + +  +d++ +++ a  ++ +   +Pt++++   k + ++  ga +
   KOO25095.1 509 TKLKKRKSGsPLSFSWLDATCQPSFAGAFGLSEvdLPTMIFISPTKlKWARHMGAFD 565
                  55555555578899999************9986336*****9988866666666655 PP

>> Thioredoxin_6  Thioredoxin-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.6   0.0   4.1e-08   8.1e-05      10     110 ..      69     181 ..      65     226 .. 0.85
   2 ?   -0.4   0.0      0.46   9.1e+02     138     160 ..     288     310 ..     236     326 .. 0.68
   3 !   28.0   0.0   9.1e-10   1.8e-06      14     181 ..     386     572 ..     374     573 .. 0.77

  Alignments for each domain:
  == domain 1  score: 22.6 bits;  conditional E-value: 4.1e-08
                    HHHHHHTTT-T.TSEEEEE--HH...HHHHTT--S.SEEEEEETTTTEEEEEETH..........T--HHHHHHHHHHH---SEEE-SHHHHHHHH CS
  Thioredoxin_6  10 eiFekvakelkgdvrfgvtkske...vadklgvke.pavllfrkfdeekvkydge..........kitvddlkkfieknslplvreltpenaeelf 91 
                    + F+k+a++l g v fg+++++e    +++ gv++ p+v+l+ + + ++  y+g+            t++ +++f +    +lv  +t++++ +++
     KOO25095.1  69 KGFQKAAENLAGIVKFGAVNADEskkTVQAAGVQGyPSVKLYLPGSGSRNPYTGKfyktpvdysgPRTAKGVVEFATATLPSLVVPVTDKSLAKFQ 164
                    66*****************98887778888****99*******777777777777777777666678***************************** PP

                    TSS--EEEEEEE-TTSTTH CS
  Thioredoxin_6  92 eeglppllllflkkddeet 110
                    ++g  p  +lf+kk++  t
     KOO25095.1 165 KNGTLPKAVLFTKKEE--T 181
                    ************8754..3 PP

  == domain 2  score: -0.4 bits;  conditional E-value: 0.46
                    GHHHHHHTT--GGG-SEEEEEES CS
  Thioredoxin_6 138 fkrpleylglsssdlPvivivds 160
                     +++ +++gl+ s+ P++v++  
     KOO25095.1 288 AADLADRFGLKPSAQPQLVVYPF 310
                    34477899**********99865 PP

  == domain 3  score: 28.0 bits;  conditional E-value: 9.1e-10
                    HHTTT-T.TSEEEEE--HH..HHHHTT--S.SEEEEEET....TTTEEEEEETH........T--HHHHHHHHHH.H---SEEE-SHHHHHHHHTS CS
  Thioredoxin_6  14 kvakelkgdvrfgvtkske..vadklgvke.pavllfrk....fdeekvkydge........kitvddlkkfiek.nslplvreltpenaeelfee 93 
                    ++  +++g+v+fg+ +++e  +a+ ++v++ p++l+  +    ++  +v ++g         k+++ ++++f+++ +  ++++el+  +   l   
     KOO25095.1 386 AISLSFEGKVAFGMAQASEaaLAKRFNVQKaPTLLVMFPgdkvDEQGQVPLTGMiftpqmhgKFNYGNIANFVAQiKEEGPIEELNAATIGPLCVA 481
                    56668999*******9999666777*****9999999973333334566666669999999************88356678********9999888 PP

                    S--EEEEEEE-TTSTTHHHHHHHHHHHHHHTTTT....-EEEEEETTGGHHHHHHTT--GGG-SEEEEEESSSS-EEEET.TSS--HHHHHHH CS
  Thioredoxin_6  94 glppllllflkkddeeteklkkaiekvakefkdk....infaladaksfkrpleylglsssdlPvivivdsashkykypp.kdefspeklkeF 181
                    +  +  + +l+  +e ++   +++e ++k  k+k    + f+++da+  + +   +gls+ dlP++++++    k+k+++  + f++e l +F
     KOO25095.1 482 KGGLCAIAMLDGAPENEAAKTAHLEMLTKLKKRKsgspLSFSWLDATCQPSFAGAFGLSEVDLPTMIFIS--PTKLKWARhMGAFDVETLGAF 572
                    8886666666544444433334444444444433444899*******99*********************..888888888*******99887 PP

>> OST3_OST6  OST3 / OST6 family, transporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.0   2.1e-06    0.0043      45     169 ..      60     180 ..      29     193 .. 0.72
   2 ?   -1.6   0.0      0.68   1.4e+03      84     108 ..     205     229 ..     201     252 .. 0.78
   3 !    5.5   0.0    0.0048       9.5      70     136 ..     391     461 ..     350     472 .. 0.75

  Alignments for each domain:
  == domain 1  score: 16.5 bits;  conditional E-value: 2.1e-06
   OST3_OST6  45 kCelCrefepefelvakswrkdekskskklfFakvdfdegkdvFqklglnsaPhlllfppkkgpk.esk..kkdtydfsrggf.daealakfisertgv 139
                  C  C++f++ f++ a+            + F+ v+ de+k+++q  g++  P + l+ p +g + + +  k+++ +++ +g  +a+ +++f + +++ 
  KOO25095.1  60 WCGHCKQFAKGFQKAAENLAGI-------VKFGAVNADESKKTVQAAGVQGYPSVKLYLPGSGSRnP-YtgKFYKTPVDYSGPrTAKGVVEFATATLPS 150
                 599**********999999888.......88***************************998777732.2468888887777667999999999999885 PP

   OST3_OST6 140 kirikrppnyskiiitallvlllvlllklr 169
                  +    +  ++k++++ +l  +++++ k  
  KOO25095.1 151 LVVPVTDKSLAKFQKNGTLPKAVLFTKKEE 180
                 444444447777777776666666665555 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 0.68
   OST3_OST6  84 gkdvFqklglnsaPhlllfppkkgp 108
                 ++++++++g++  P++++ p++ + 
  KOO25095.1 205 AEKTVAEFGVTDFPKVVVLPSAPDA 229
                 678999*************995544 PP

  == domain 3  score: 5.5 bits;  conditional E-value: 0.0048
   OST3_OST6  70 kskklfFakvdfdegkdvFqklglnsaPhlllfppkkgpk.esk..kkdtydfsrg...gfdaealakfiser 136
                 ++ k+ F+++  +e+  + +++++++aP ll++ p ++ + +    +   + f+ +   +f+  ++a+f+++ 
  KOO25095.1 391 FEGKVAFGMAQASEA-ALAKRFNVQKAPTLLVMFPGDKVDeQ-GqvPLTGMIFTPQmhgKFNYGNIANFVAQI 461
                 567888888887665.6889*********9998885555532.235555555555433344888888888765 PP

>> Thioredoxin_8  Thioredoxin-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.9   0.0   0.00045      0.89       5      51 ..      53      97 ..      50     106 .. 0.88
   2 ?   -0.5   0.0      0.82   1.6e+03      73      89 ..     207     223 ..     198     226 .. 0.81
   3 ?    4.3   0.0     0.026        52      69      89 ..     402     422 ..     392     428 .. 0.78

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.00045
                   EEEE--SSSHHHHHHHHHHHHHHHHHHHTTSEEEEEEE-SS-HHHHH CS
  Thioredoxin_8  5 lLyfgaswcppckaftpklkelyeklkkkkkveivyvsldkkeeefe 51
                   ++ ++a+wc +ck+f +  ++  e+l     v++ +v+ d++++ ++
     KOO25095.1 53 VVEYYADWCGHCKQFAKGFQKAAENLA--GIVKFGAVNADESKKTVQ 97
                   567899********************9..899999999999877665 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 0.82
                    HHTT-S--TT-SEEEEE CS
  Thioredoxin_8  73 klkkkynvkaiPtlvvl 89 
                    k   +++v+ +P++vvl
     KOO25095.1 207 KTVAEFGVTDFPKVVVL 223
                    55678**********98 PP

  == domain 3  score: 4.3 bits;  conditional E-value: 0.026
                    T-HHHHTT-S--TT-SEEEEE CS
  Thioredoxin_8  69 kkrnklkkkynvkaiPtlvvl 89 
                     +  +l+k++nv++ Ptl+v+
     KOO25095.1 402 ASEAALAKRFNVQKAPTLLVM 422
                    45789*************997 PP

>> Thioredoxin_2  Thioredoxin-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.2   0.3     0.007        14      11      60 ..      55      96 ..      45     229 .. 0.74
   2 !    9.5   0.0   0.00064       1.3      50     101 ..     384     435 ..     354     440 .. 0.66
   3 ?   -2.7   0.0       4.2   8.3e+03      81     100 ..     544     564 ..     533     569 .. 0.79
   4 ?   -3.5   0.2       6.9   1.4e+04      59      75 ..     686     702 ..     666     716 .. 0.54

  Alignments for each domain:
  == domain 1  score: 6.2 bits;  conditional E-value: 0.007
  Thioredoxin_2 11 vftdpdCpyCkklkkelkel.ddvtvrvllfplkpsfepkavaiwcakekk 60
                    +++++C+ Ck++ k +++  +++  +         +++ av+ + +k  +
     KOO25095.1 55 EYYADWCGHCKQFAKGFQKAaENLAGI---------VKFGAVNADESKKTV 96
                   456999999999999998885555444.........444455554444443 PP

  == domain 2  score: 9.5 bits;  conditional E-value: 0.00064
  Thioredoxin_2  50 avaiwcakekkkafkd.ieenvelarkygvrgtPt.ivfldgkeivarlpGyvp 101
                     +ai+ + e k af    +++ +la++++v+  Pt +v+++g+ +v++ +G vp
     KOO25095.1 384 LRAISLSFEGKVAFGMaQASEAALAKRFNVQKAPTlLVMFPGD-KVDE-QGQVP 435
                    45555555555444444578999************888***99.4444.56655 PP

  == domain 3  score: -2.7 bits;  conditional E-value: 4.2
  Thioredoxin_2  81 tPtivfldgk.eivarlpGyv 100
                    +Pt++f+ ++  + ar  G+ 
     KOO25095.1 544 LPTMIFISPTkLKWARHMGAF 564
                    6**999999977777777765 PP

  == domain 4  score: -3.5 bits;  conditional E-value: 6.9
  Thioredoxin_2  59 kkkafkdieenvelark 75 
                    ++k++k+++++++l ++
     KOO25095.1 686 REKQLKAVDKERKLQEQ 702
                    44444443333333332 PP

>> Thioredoxin_3  Thioredoxin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.0   0.0   0.00017      0.34      10      53 ..      61     107 ..      54     111 .. 0.91
   2 ?   -1.5   0.0       1.3   2.7e+03      39      55 ..     206     222 ..     191     222 .. 0.80
   3 ?    1.6   0.0      0.15     3e+02      35      68 ..     401     437 ..     390     441 .. 0.77

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00017
                    STTCHHHHHHHHHHCHCC.T.CECEEECCTTHHHH.HHCT-SSSSEE CS
  Thioredoxin_3  10 CakCpklekavkeaaaek.g.ikaevekvtdfeei.ekygVmsvPal 53 
                    C +C++++k +++aa+++ g +k+  +++ ++++  +  gV+  P++
     KOO25095.1  61 CGHCKQFAKGFQKAAENLaGiVKFGAVNADESKKTvQAAGVQGYPSV 107
                    ******************889999999999999999*****999987 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 1.3
                    HHHHHHCT-SSSSEEEC CS
  Thioredoxin_3  39 feeiekygVmsvPalvi 55 
                     ++++++gV+  P++v+
     KOO25095.1 206 EKTVAEFGVTDFPKVVV 222
                    455599********997 PP

  == domain 3  score: 1.6 bits;  conditional E-value: 0.15
                    CCTTHHHHHHCT-SSSSEEECT...TCEEEESS---C CS
  Thioredoxin_3  35 kvtdfeeiekygVmsvPalvid...gkvvvsGkvpse 68 
                    ++++    ++++V++ P+l++    +kv  +G+vp +
     KOO25095.1 401 QASEAALAKRFNVQKAPTLLVMfpgDKVDEQGQVPLT 437
                    5555555599*********876677999999999976 PP

>> HyaE  Hydrogenase-1 expression protein HyaE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.0       1.3   2.7e+03      69      90 ..     202     223 ..     190     227 .. 0.80
   2 !   13.2   0.0   3.2e-05     0.064      52      93 ..     382     425 ..     342     430 .. 0.78

  Alignments for each domain:
  == domain 1  score: -1.6 bits;  conditional E-value: 1.3
                 HHHHHHHHHCCT-TSSSEEEEE CS
        HyaE  69 reqeealaerfgvlktPsllfl 90 
                 re  e+   +fgv+ +P +++l
  KOO25095.1 202 RETAEKTVAEFGVTDFPKVVVL 223
                 56777778899******99987 PP

  == domain 2  score: 13.2 bits;  conditional E-value: 3.2e-05
                 HHHCT-TTS-EEEE.EE.THHHHHHHHHCCT-TSSSEEEEEETT CS
        HyaE  52 EllkaFpnalraav.va.dreqeealaerfgvlktPsllflrdg 93 
                  ll+a    ++  v ++  ++ e+ala+rf+v+k P+ll++  g
  KOO25095.1 382 PLLRAISLSFEGKVaFGmAQASEAALAKRFNVQKAPTLLVMFPG 425
                 45555544444433133446899****************98665 PP

>> AhpC-TSA  AhpC/TSA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   7.4e-05      0.15       7      72 ..      32      94 ..      29     107 .. 0.76

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 7.4e-05
                --EEESTTCEEEECHHHTTSEEEEEEESTST-CCHHHHHHHHHHCHHHCCCTTEEEEEEESSSCHH CS
    AhpC-TSA  7 dfelknadgetvslsdykgkpvvlffypkdwcpvCttelpalaklyeefkergvevigvsvdspes 72
                  +l ++++++   +d +    v+  y+  wc +C++ ++ ++k++e+++   v+  +v++d+ ++
  KOO25095.1 32 LTKLDDTNFDQTVIKDDRH-LWVVEYYAD-WCGHCKQFAKGFQKAAENLA-GIVKFGAVNADESKK 94
                5667777777777777766.667777777.*****************999.457888888877764 PP

>> Thioredoxin_7  Thioredoxin-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   0.00019      0.37      19      78 ..      50     107 ..      43     112 .. 0.68

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00019
                    -EEE.EE--TT-HHHHHHHHHHHH-HHHHH.HHHT-EEEEESS--S-GGG.-TT-.--SSEE CS
  Thioredoxin_7  19 pvlv.ffgaswcftCqalerdflsdeevkaalaekfvllrvdvterdanilelde.qgvPvv 78 
                     ++v    a+wc++C+ +++ f ++ e+ a   + + +  v+ +e+++ + +  + qg+P v
     KOO25095.1  50 HLWVvEYYADWCGHCKQFAKGFQKAAENLA---GIVKFGAVNADESKKTV-QAAGvQGYPSV 107
                    55553679**************99988855...55555555555555555.44444667766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (723 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1069  (0.0596241); expected 358.6 (0.02)
Passed bias filter:                      433  (0.0241508); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.65u 0.22s 00:00:00.87 Elapsed: 00:00:00.39
# Mc/sec: 5559.02
//
Query:       KOO25096.1  [L=229]
Description: hypothetical protein Ctob_002411 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (229 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       687  (0.0383178); expected 358.6 (0.02)
Passed bias filter:                      338  (0.0188521); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.40u 0.20s 00:00:00.60 Elapsed: 00:00:00.35
# Mc/sec: 1987.04
//
Query:       KOO25097.1  [L=306]
Description: hypothetical protein Ctob_002410 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
     0.0019   18.4   7.1      0.018   15.3   2.5    2.7  2  Lzipper-MIP1    Leucine-zipper of ternary complex factor MIP1
     0.0055   16.7  12.0     0.0069   16.4   4.9    3.1  3  CENP-F_leu_zip  Leucine-rich repeats of kinetochore protein C
     0.0082   16.0  17.4      0.011   15.5  17.4    1.1  1  ERM             Ezrin/radixin/moesin family
  ------ inclusion threshold ------
        0.1   13.2   0.9        2.7    8.7   0.9    2.6  1  DUF2470         Protein of unknown function (DUF2470)
       0.18   11.5   4.4       0.34   10.7   4.4    1.4  1  TACC_C          Transforming acidic coiled-coil-containing pr
        0.2   11.7   1.0        4.2    7.5   0.1    2.4  2  IFP_35_N        Interferon-induced 35 kDa protein (IFP 35) N-
       0.22   12.0   2.9        9.2    6.8   0.1    3.1  3  Fungal_TACC     Fungal Transforming acidic coiled-coil (TACC)
        0.6    8.6   7.2       0.79    8.2   7.2    1.3  1  Macoilin        Macoilin family
        1.9    8.5   7.9          2    8.5   0.2    2.8  2  DUF1640         Protein of unknown function (DUF1640)
          2    8.8  13.2         29    5.0  13.2    2.3  1  Fez1            Fez1
        2.5    8.0   8.4        6.7    6.6   0.5    3.2  3  DivIC           Septum formation initiator
          3    8.3   7.5        3.9    7.9   5.7    2.0  2  DUF1690         Protein of Unknown function (DUF1690)


Domain annotation for each model (and alignments):
>> Lzipper-MIP1  Leucine-zipper of ternary complex factor MIP1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   2.5   1.2e-05     0.018       5      74 ..     121     192 ..     118     201 .. 0.76
   2 ?    4.7   0.2     0.025        37      11      31 ..     249     269 ..     242     294 .. 0.79

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 1.2e-05
  Lzipper-MIP1   5 krssLeqeveqLqerLqeeeklrraLekal...ssssdgsllslstllpkkakellkeiallEeevvkLEqkl 74 
                   ++  Le+eve+L+ +L +e++ r aL  a    +  + +s+ + s+ l ++++ l++e+  + +e +kL+ +l
    KOO25097.1 121 TQERLENEVERLHAELTQERR-RGALAVAPaaaADVAASSTRKGSSELASEVTALRAELKAARLEKAKLKTEL 192
                   6889************99986.889998884432233333444455667899999999999999999998877 PP

  == domain 2  score: 4.7 bits;  conditional E-value: 0.025
  Lzipper-MIP1  11 qeveqLqerLqeeeklrraLe 31 
                    eve+L++ L++e   r+ Le
    KOO25097.1 249 LEVERLEKALRNEGLRRHELE 269
                   69***********99988888 PP

>> CENP-F_leu_zip  Leucine-rich repeats of kinetochore protein Cenp-F/LEK1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   4.9   4.6e-06    0.0069      17     102 ..     120     205 ..     115     215 .. 0.90
   2 ?    2.7   0.1      0.08   1.2e+02      73     106 ..     242     275 ..     219     280 .. 0.83
   3 ?    0.1   0.0      0.52   7.7e+02      26      36 ..     284     294 ..     283     298 .. 0.88

  Alignments for each domain:
  == domain 1  score: 16.4 bits;  conditional E-value: 4.6e-06
  CENP-F_leu_zip  17 rkadsLkdkvenLerelemseenqekvileaEtskaevetlkeeieelaeelreleldLvalrsekeeLekelqkkqervseLesl 102
                     r ++ L++ ve+L +el +  +    ++  a  +  ++++ ++   ela+e + l+++L+a r ek +L+ el  ++++  + e++
      KOO25097.1 120 RTQERLENEVERLHAELTQERRRGALAVAPAAAADVAASSTRKGSSELASEVTALRAELKAARLEKAKLKTELMIERSKHANPERT 205
                     67889********************************************************************9988876655555 PP

  == domain 2  score: 2.7 bits;  conditional E-value: 0.08
  CENP-F_leu_zip  73 ldLvalrsekeeLekelqkkqervseLeslnssl 106
                     + L ++  e e Lek l+++  r +eLe l+  +
      KOO25097.1 242 VSLFTMHLEVERLEKALRNEGLRRHELEGLRAAF 275
                     5678888999******************998766 PP

  == domain 3  score: 0.1 bits;  conditional E-value: 0.52
  CENP-F_leu_zip  26 venLerelems 36 
                     v+nLerel m+
      KOO25097.1 284 VQNLERELAMQ 294
                     79******997 PP

>> ERM  Ezrin/radixin/moesin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5  17.4   7.7e-06     0.011      14     194 ..      80     271 ..      74     278 .. 0.75

  Alignments for each domain:
  == domain 1  score: 15.5 bits;  conditional E-value: 7.7e-06
         ERM  14 LkqlqeeaekaqeaLreseetaelLaekarraeeeaelLeqkaaeaeeeiqrlkesaekeeeekeklerklreaeleaarleeeserkeeeaerLkeel 112
                 L+++ + ae  +++Lr+ ++    L+  a r   +    ++ ++++e+e +rl  +  +e +  +   + +++a+  a+  ++ s++ ++e++ L++el
  KOO25097.1  80 LTHFGQRAEPLMAQLRRLQRDRLTLDALADRQAADVSSWARTQERLENEVERLHAELTQERRRGALAVAPAAAADVAASSTRKGSSELASEVTALRAEL 178
                 67777888888999****************************************9999999999999999***************************** PP

         ERM 113 eeareaeeeakekllealstpskseseenveeseteeeeensee......esaeletde.............veklsleieeeRvtylekskrlqeq.L 191
                 ++ar ++ + k++l+   s+ +++      e+ ++   + +s++        aele+               v+  +++ e eR++ + +++ l+ + L
  KOO25097.1 179 KAARLEKAKLKTELMIERSKHANP------ERTDE---DAESAPstagisVRAELEARRrlsasaamrnsqgVSLFTMHLEVERLEKALRNEGLRRHeL 268
                 ******999998877655555322......22222...222222123344334444444444444444434566677999***********99975425 PP

         ERM 192 keL 194
                 + L
  KOO25097.1 269 EGL 271
                 555 PP

>> DUF2470  Protein of unknown function (DUF2470)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.7   0.9    0.0018       2.7      12      47 ..      46     108 ..      42     126 .. 0.68

  Alignments for each domain:
  == domain 1  score: 8.7 bits;  conditional E-value: 0.0018
                 -HHHHHHHHHHCS..........................T-TTCCEEEEEEE-SSEEEEEE.C CS
     DUF2470  12 Haddlllylrhyg..........................kvkeaksarmtdidldgltlrl.g 47 
                 H+ ++++ ++h+g                          +++e   a++  +++d+ltl + +
  KOO25097.1  46 HRRAMHDVCQHVGgllrvsgdglalcmwralvallthfgQRAEPLMAQLRRLQRDRLTLDAlA 108
                 666666666666666666666666666666666666553666669999***********9752 PP

>> TACC_C  Transforming acidic coiled-coil-containing protein (TACC), C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   4.4   0.00023      0.34      78     183 ..      88     192 ..      79     201 .. 0.87

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00023
      TACC_C  78 eqlladlnsveksfsdlfkryekqkevlegykkneeslkkcaeeylarvkkeeqRYqaLkahaeekLekAneeiaqvrskakaetaalqasLrkeqlkv 176
                 e l+a+l+ +++    l    ++q   ++ + + +e+l +++e + a +++e +R  aL        + A +  ++ +s+ ++e++al+a+L+ + l+ 
  KOO25097.1  88 EPLMAQLRRLQRDRLTLDALADRQAADVSSWARTQERLENEVERLHAELTQE-RRRGALAVAPAAAADVAASSTRKGSSELASEVTALRAELKAARLEK 185
                 5677788888888888888889999************************965.56689999999999**************************999998 PP

      TACC_C 177 qSLeksl 183
                   L+ +l
  KOO25097.1 186 AKLKTEL 192
                 8887766 PP

>> IFP_35_N  Interferon-induced 35 kDa protein (IFP 35) N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.5   0.1    0.0028       4.2       4      29 ..     117     142 ..     115     147 .. 0.85
   2 ?    2.4   0.1      0.11   1.6e+02       7      54 ..     162     210 ..     157     227 .. 0.67

  Alignments for each domain:
  == domain 1  score: 7.5 bits;  conditional E-value: 0.0028
    IFP_35_N   4 eitkeniqLkeeiqkLeaELQettre 29 
                 + ++ + +L++e+ +L aEL ++ r 
  KOO25097.1 117 SWARTQERLENEVERLHAELTQERRR 142
                 5677899*************998875 PP

  == domain 2  score: 2.4 bits;  conditional E-value: 0.11
    IFP_35_N   7 keniqLkeeiqkLeaELQettre.fqikediPetKikftsvEtPeddsq 54 
                 k  ++L  e+  L aEL  +  e  ++k +   ++ k   +E  ++d +
  KOO25097.1 162 KGSSELASEVTALRAELKAARLEkAKLKTELMIERSKHANPERTDEDAE 210
                 5678899999999999987764413566666666666666666555555 PP

>> Fungal_TACC  Fungal Transforming acidic coiled-coil (TACC) proteins
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.4   0.1     0.072   1.1e+02      45      66 ..     120     141 ..     110     144 .. 0.83
   2 ?    6.8   0.1    0.0062       9.2      47      71 ..     164     188 ..     156     193 .. 0.87
   3 ?   -0.1   0.0      0.86   1.3e+03      50      63 ..     247     260 ..     233     271 .. 0.65

  Alignments for each domain:
  == domain 1  score: 3.4 bits;  conditional E-value: 0.072
  Fungal_TACC  45 lenkslkqeieqLkkqleaerk 66 
                    +++l++e+e+L+ +l+ er+
   KOO25097.1 120 RTQERLENEVERLHAELTQERR 141
                  56789999********999986 PP

  == domain 2  score: 6.8 bits;  conditional E-value: 0.0062
  Fungal_TACC  47 nkslkqeieqLkkqleaerkEKqeL 71 
                   ++l++e++ L+ +l+a+r EK +L
   KOO25097.1 164 SSELASEVTALRAELKAARLEKAKL 188
                  57899*****************998 PP

  == domain 3  score: -0.1 bits;  conditional E-value: 0.86
  Fungal_TACC  50 lkqeieqLkkqlea 63 
                  ++ e+e+L+k l +
   KOO25097.1 247 MHLEVERLEKALRN 260
                  34455666665555 PP

>> Macoilin  Macoilin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.2   7.2   0.00053      0.79     459     552 ..      95     191 ..      75     270 .. 0.79

  Alignments for each domain:
  == domain 1  score: 8.2 bits;  conditional E-value: 0.00053
    Macoilin 459 sakqkdkqtlqqlekrLkeekearaslekqLaeekkrkkeeeetaar..avalaaasr.secteslkskkreleaeikkLekelklkeeqirelelk 552
                    q+d+ tl  l  r  ++ ++ a ++++L++e  r + e  + +r  a a+a a+     + s ++  +el +e+  L+ elk +  + ++l+++
  KOO25097.1  95 RRLQRDRLTLDALADRQAADVSSWARTQERLENEVERLHAELTQERRrgALAVAPAAAaDVAASSTRKGSSELASEVTALRAELKAARLEKAKLKTE 191
                 45699**************************9998877666444433114455544442456678899999*************9988777777744 PP

>> DUF1640  Protein of unknown function (DUF1640)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.5   0.2    0.0013         2      69      98 ..     110     139 ..      74     145 .. 0.88
   2 ?    3.5   0.9     0.045        68      75     116 ..     158     200 ..     151     225 .. 0.66

  Alignments for each domain:
  == domain 1  score: 8.5 bits;  conditional E-value: 0.0013
     DUF1640  69 sersefaalrseteklqreleklkqkLree 98 
                 ++  ++++  + +e+l++e+e+l+ +L +e
  KOO25097.1 110 RQAADVSSWARTQERLENEVERLHAELTQE 139
                 5688999999*****************998 PP

  == domain 2  score: 3.5 bits;  conditional E-value: 0.045
     DUF1640  75 aalrseteklqreleklkqkLre.eidklkadirldlnleKgr 116
                 ++ r+ + +l +e+ +l+ +L+   ++k k +++l+++  K  
  KOO25097.1 158 SSTRKGSSELASEVTALRAELKAaRLEKAKLKTELMIERSKHA 200
                 4556666666666667776666424566666666666665554 PP

>> Fez1  Fez1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.0  13.2     0.019        29      66     164 ..      99     198 ..      71     277 .. 0.49

  Alignments for each domain:
  == domain 1  score: 5.0 bits;  conditional E-value: 0.019
        Fez1  66 lelevcenelqrkkseaellrekvekleeelkelreelselsleeeeaalesdeakaqrqe.aeeleelkreverlraeLkeerqkkeeqassFeqERr 163
                 ++  ++++  +r+ ++++    ++e+le+e+++l+ el++  ++ + a++ + +a +  ++ ++ ++el +ev  lraeLk  r +k + +++   ER 
  KOO25097.1  99 RDRLTLDALADRQAADVSSWARTQERLENEVERLHAELTQERRRGALAVAPAAAADVAASStRKGSSELASEVTALRAELKAARLEKAKLKTELMIERS 197
                 333333333344444444444445555555555555555544444433333333222222113334445555555555555555555555544444444 PP

        Fez1 164 t 164
                 +
  KOO25097.1 198 K 198
                 3 PP

>> DivIC  Septum formation initiator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.0   1.0     0.029        44      16      51 ..      98     133 ..      90     145 .. 0.75
   2 ?    6.6   0.5    0.0045       6.7      21      47 ..     166     192 ..     160     209 .. 0.84
   3 ?   -0.3   0.0      0.64   9.6e+02      17      44 ..     242     269 ..     236     274 .. 0.83

  Alignments for each domain:
  == domain 1  score: 4.0 bits;  conditional E-value: 0.029
                 XXHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-X CS
       DivIC  16 llaykqlkqeiaalqaelaklkaeneeLeaevkdLk 51 
                 ++++  l++  +++ a++ +   ++e+Le ev++L+
  KOO25097.1  98 QRDRLTLDALADRQAADVSSWARTQERLENEVERLH 133
                 556666777778888888888899999999999985 PP

  == domain 2  score: 6.6 bits;  conditional E-value: 0.0045
                 HHHHHHHHHHHHHHHHHHHHHHHHHHH CS
       DivIC  21 qlkqeiaalqaelaklkaeneeLeaev 47 
                 +l +e++al ael++ + e+++L+ e+
  KOO25097.1 166 ELASEVTALRAELKAARLEKAKLKTEL 192
                 7889*******************9985 PP

  == domain 3  score: -0.3 bits;  conditional E-value: 0.64
                 XHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
       DivIC  17 laykqlkqeiaalqaelaklkaeneeLe 44 
                 ++++ ++ e+++l++ l +   ++ eLe
  KOO25097.1 242 VSLFTMHLEVERLEKALRNEGLRRHELE 269
                 5677899999****99999888888887 PP

>> DUF1690  Protein of Unknown function (DUF1690)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.9   5.7    0.0026       3.9      36     108 ..     122     193 ..      93     212 .. 0.83
   2 ?   -0.5   0.0         1   1.5e+03      61      97 ..     230     262 ..     214     288 .. 0.70

  Alignments for each domain:
  == domain 1  score: 7.9 bits;  conditional E-value: 0.0026
     DUF1690  36 qerVaeeLkkLraeeeetlkkfeeklekellkdeadakdelsskalnekieeLrkkleefkkkeeeklpeeve 108
                 qer ++e+++L+ae  + ++    +++ + ++d a++++ + s++l++++++Lr+ l++  + e++kl++e+ 
  KOO25097.1 122 QERLENEVERLHAELTQERRRGALAVAPAAAADVAASSTRKGSSELASEVTALRAELKA-ARLEKAKLKTELM 193
                 89999999999888888888888888888888889999********************9.5555557766654 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 1
     DUF1690  61 lekellkdeadakdelsskalnekieeLrkkleefkk 97 
                 l+++ +    ++++++s  +++ ++e L+k l + + 
  KOO25097.1 230 LSASAAM---RNSQGVSLFTMHLEVERLEKALRN-EG 262
                 3333333...347888888899999999988877.33 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (306 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1141  (0.0636399); expected 358.6 (0.02)
Passed bias filter:                      522  (0.0291148); expected 358.6 (0.02)
Passed Vit filter:                        51  (0.00284455); expected 17.9 (0.001)
Passed Fwd filter:                        16  (0.000892409); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.52u 0.25s 00:00:00.77 Elapsed: 00:00:00.40
# Mc/sec: 2267.59
//
Query:       KOO25098.1  [L=526]
Description: d-arabinose 1-dehydrogenase-like protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.1e-41  143.0   0.0    1.5e-41  142.5   0.0    1.1  1  Aldo_ket_red    Aldo/keto reductase family
  ------ inclusion threshold ------
       0.79    8.5   8.3      0.021   13.7   1.2    1.8  2  Androgen_recep  Androgen receptor


Domain annotation for each model (and alignments):
>> Aldo_ket_red  Aldo/keto reductase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  142.5   0.0   1.7e-45   1.5e-41      13     287 ..     131     398 ..     123     405 .. 0.91

  Alignments for each domain:
  == domain 1  score: 142.5 bits;  conditional E-value: 1.7e-45
                   .TS-HHHHHHHHHHHHHTT--EEE--TT-TTTHHHHHHHHHHHH-TTTGGG-EEEEEE..--SSSTTSSSS-HHHHHHHHHHHHHHHT-S-EEEEEE CS
  Aldo_ket_red  13 eeiskeealellrraleaGinffDtAevYgkgqseellGealkksrkkreeviiatKv..dlrdaeiksglskeniresleeslkrLgtdyvDllll 107
                    e +k+++le++ ++l+aG+n++DtA  Yg+g+se+llG+al+k   +r  + i tK+  ++    +++++s e   ++ ++slkrL+ +y+  l++
    KOO25098.1 131 AEADKQKVLEIVTACLKAGVNLIDTAHWYGQGRSERLLGHALSK--LPRNAYHIFTKIgrYDTALLQMFDFSYEKTYQAGQDSLKRLRCEYITSLQV 225
                   57899***************************************..************766666679****************************** PP

                   -S--TTS-....HHHHHHHHHHHHHTTSEEEEEEES--HHHHHHH..HHTTT--EEEEE-B-BTT.-HHHHTTHHHHHHHTT-EEEEBSTTGGGTTG CS
  Aldo_ket_red 108 Hrpdpslp...sieevldaleelvkeGkiraiGvSnfsveqleka..kkkkkvkivavqveynll.releeegllelckkkgvpliaysplggGllt 198
                   H+p+++ +    + e+l al+ l++eG +r iG ++++ +  +++  ++   ++ +  + +y+l  +++ ++g +e+c+kkg++li++ p+++Gl t
    KOO25098.1 226 HDPEFAPSyeiILNETLPALQRLKEEGVCRLIGMTGYPLDLQQEIisRSSIALQTSLTYCHYTLSdTSVLASGFIEFCEKKGIALINAAPIAMGLHT 322
                   *****998666677999****************************98888999999999*****9*******************************9 PP

                   TTTSS---SSSCCC-------TS-HHHHHHHHHHHHHHHHTT--HHHHHHHHHTTSTT-SEEEE--SSHHHHHHHHGGGG----HHHHH CS
  Aldo_ket_red 199 gkyqseedkedkeprkdlkrdertsknldaaeelselakehgvslaqlalryalsqpavgivipgasnieqlednldalelklseeeva 287
                       s++  ++ +p+              ++ ++ +++ + +v++  lal + +s+++  +++++++++++l +n++a   +ls+ e +
    KOO25098.1 323 --LASPPGWHPAKPET-----------KALCAKAAKYCMQENVDICKLALHFSMSHERLPSTLISCTSLQELAANVRAATEPLSAHEQQ 398
                   ..33334444444444...........49**************************************************8899987755 PP

>> Androgen_recep  Androgen receptor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   1.0      0.13   1.2e+03     426     460 ..      84     116 ..      57     133 .. 0.54
   2 ?   13.7   1.2   2.3e-06     0.021     333     404 ..     448     520 ..     434     525 .. 0.77

  Alignments for each domain:
  == domain 1  score: -2.0 bits;  conditional E-value: 0.13
  Androgen_recep 426 crygdlaslahgagaaaaaaaaaaaaaaagpgsgs 460
                      r g   s+   +g+    a   +a++aag  s s
      KOO25098.1  84 ARIGSKVSVLSLGGS--GFAGMHSASSAAGVNSAS 116
                     355554444333332..222233333344444433 PP

  == domain 2  score: 13.7 bits;  conditional E-value: 2.3e-06
  Androgen_recep 333 aldgdslgcs.gsaaaggggeaaaagqlelpsalalykagaldeaaayqsrdyynfqlalagpppppppphph 404
                     a +gds+g   gs+aa     ++a  ++ +   +al   g     aa    + y+  + l gp pppppp p 
      KOO25098.1 448 AGQGDSMGARyGSSAARKLVPTVADSDFSIAVGMALLLVGIAVLVAACMGYNDYERLVVLLGPSPPPPPPPPS 520
                     55899**98537788888888999999999999**99999777777776666667778888998888888775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (526 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       716  (0.0399353); expected 358.6 (0.02)
Passed bias filter:                      609  (0.0339673); expected 358.6 (0.02)
Passed Vit filter:                        59  (0.00329076); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.58u 0.26s 00:00:00.84 Elapsed: 00:00:00.42
# Mc/sec: 3792.34
//
Query:       KOO25099.1  [L=411]
Description: membrane protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.4e-27   96.1   2.1    3.8e-27   95.5   2.1    1.2  1  Bestrophin  Bestrophin, RFP-TM, chloride channel


Domain annotation for each model (and alignments):
>> Bestrophin  Bestrophin, RFP-TM, chloride channel
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   95.5   2.1   2.1e-31   3.8e-27      29     291 ..      69     316 ..      49     320 .. 0.75

  Alignments for each domain:
  == domain 1  score: 95.5 bits;  conditional E-value: 2.1e-31
  Bestrophin  29 lllflllyalvvllyrleerl....fellsi.celipLsfvLgFrvnavydRWweqrkllgwldkaarslarqvrglsdeegrlarrtilrylvlllvl 122
                 +l+fl + +l+ +      +     f+l ++ +   +L+f+ + r+ a+++RWwe+r ++ +l + ++s+  q+       ++ +  + +   ++ l++
  KOO25099.1  69 VLTFLQALYLLEVNPD---SAaaiiFPLDAHvILGGALAFLVVMRTDASMNRWWEARCSWQELMNSCISIGCQTAPA---LQTVKASEQM---LMELMA 158
                 2222222222222222...222233333333222449************************************9994...3466666666...78**** PP

  Bestrophin 123 ffralssrvrkrfptlehlleagllteeeakilenkywvplqWavsllrrlaerlkelakegrikddqalkeleeelnelraklgsleridwtpiPlvY 221
                 f+ +l++ +r +  + e++   g +  e  ++l++++++p++ a+++l+r+a r   ++ + ++     ++e  e + e+ + +g++++i+ tp+ ++Y
  KOO25099.1 159 FCVCLKAFLRDTTVQREECG--GRMDWEYIRKLNAAHNPPVT-ALQCLSRTA-R---QNLASNLGPA-IYDETSEAIREMNDMVGACMKIKRTPMVFSY 249
                 *****************976..557788888899********.777777744.3...4555555553.5589*************************** PP

  Bestrophin 222 tqvvtravylyfllallgrqfldseidlylPvftllqfaffffGllkvaeqlenPFGedddDlelnal.id 291
                   ++  +++l++ +  ++  ++ +   l +Pv +l  +af+f+ +++ a ++e+PFG+d +Dl+++a+ id
  KOO25099.1 250 IATLRSFLILWLST--MSIPLIGEFGWLAVPVSSL--IAFLFLNIEQMAVEIEQPFGNDANDLPIEAFlID 316
                 **************..4444444445555665555..556*************************998655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (411 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       672  (0.0374812); expected 358.6 (0.02)
Passed bias filter:                      480  (0.0267723); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.26s 00:00:00.73 Elapsed: 00:00:00.39
# Mc/sec: 3183.18
//
Query:       KOO25100.1  [L=268]
Description: exostosin family protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.3e-26   91.3   0.1      3e-22   79.2   0.0    2.1  2  Exostosin  Exostosin family


Domain annotation for each model (and alignments):
>> Exostosin  Exostosin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.5   0.1   1.4e-05      0.25       4      29 ..      42      77 ..      39     106 .. 0.70
   2 !   79.2   0.0   1.7e-26     3e-22     227     299 ..     115     191 ..      85     192 .. 0.85

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 1.4e-05
   Exostosin  4 glkVYvydlpskfnedlleecrelp..........e 29
                +  +Yvy++p+ +++dll+ ++++           +
  KOO25100.1 42 RPLIYVYEMPQSLTTDLLQRRHDKLfcahrtylkaN 77
                778******************998555554433331 PP

  == domain 2  score: 79.2 bits;  conditional E-value: 1.7e-26
   Exostosin 227 d.....ylellassrFClvppGdsptsrrlfdallagCIPViisdqielPfedvldwrefsvfvpekdvpelksilrs 299
                 d     y++ l++++FC   pGd  +s  +  a++agC+PVi+ d+ie+Pfe+vl+++ fs++++ekdvp+l  ilr+
  KOO25100.1 115 DwwhiqYHAKLRNATFCGAFPGDG-WSGGISSAVFAGCVPVIVMDGIEFPFENVLNYSAFSIRIAEKDVPRLPAILRA 191
                 244477******************.***************************************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (268 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       731  (0.0407719); expected 358.6 (0.02)
Passed bias filter:                      510  (0.0284455); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.25s 00:00:00.70 Elapsed: 00:00:00.39
# Mc/sec: 2076.50
//
Query:       KOO25101.1  [L=570]
Description: centrin 1 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.4e-14   53.6   0.5    1.8e-12   47.5   0.5    2.4  2  EF-hand_7     EF-hand domain pair
    1.8e-12   45.8   0.5    3.2e-05   23.2   0.1    3.0  3  EF-hand_1     EF hand
    8.8e-12   44.0   0.7    2.5e-06   27.0   0.1    2.8  2  EF-hand_6     EF-hand domain
    4.2e-11   42.5   1.2    2.4e-08   33.7   0.1    2.5  2  EF-hand_8     EF-hand domain pair
    6.7e-07   28.5   0.6     0.0049   16.3   0.1    2.5  2  EF-hand_5     EF hand
  ------ inclusion threshold ------
       0.04   14.2   0.0        3.4    8.1   0.0    2.5  2  EF-hand_9     EF-hand domain
      0.057   13.8   0.0       0.16   12.3   0.0    1.7  1  EF-hand_14    EF-hand domain
       0.18   12.1   0.0        0.4   11.0   0.0    1.5  1  SPARC_Ca_bdg  Secreted protein acidic and rich in cysteine Ca


Domain annotation for each model (and alignments):
>> EF-hand_7  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.5   0.5   8.1e-16   1.8e-12       4      69 ..      61     120 ..      60     120 .. 0.96
   2 ?    3.4   0.0     0.049   1.1e+02      19      63 ..     162     201 ..     153     205 .. 0.88

  Alignments for each domain:
  == domain 1  score: 47.5 bits;  conditional E-value: 8.1e-16
   EF-hand_7   4 lkeaFkelDtdgdgyldkeellrllrkifqgagegsklsdeelellfkefDtdkdGvisfdEFlkl 69 
                 l++ F+++D+dg+g l+++e++ +lr        g+ +sdee+e+lf  +D+d++G+i + EFl++
  KOO25101.1  61 LRMLFDQFDSDGSGQLSEAEMKAALR------LMGVAKSDEEIEELFTLVDLDRNGTIEWGEFLEY 120
                 8899**********************......9******************************986 PP

  == domain 2  score: 3.4 bits;  conditional E-value: 0.049
   EF-hand_7  19 ldkeellrllrkifqgagegsklsdeelellfkefDtdkdGvisf 63 
                 ld++ l++ll+          +++ ee e++ + +D  + G++ +
  KOO25101.1 162 LDRRKLMELLTT-----AGFPPFTVEEAEEFCNVLDPQGTGRMPM 201
                 788888999998.....999999****************999865 PP

>> EF-hand_1  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.2   0.1   1.4e-08   3.2e-05       1      28 [.      60      87 ..      60      88 .. 0.94
   2 !   19.7   0.0   1.9e-07   0.00042       1      25 [.      96     120 ..      96     124 .. 0.92
   3 ?   -1.5   0.0       1.1   2.4e+03       2      15 ..     184     197 ..     183     199 .. 0.59

  Alignments for each domain:
  == domain 1  score: 23.2 bits;  conditional E-value: 1.4e-08
                HHHHHHHHHTTTSSSEEEHHHHHHHHHH CS
   EF-hand_1  1 elkeiFrefDkDgdGkIdfeEfkellkk 28
                el+ +F+ fD Dg+G+++  E+k++l+ 
  KOO25101.1 60 ELRMLFDQFDSDGSGQLSEAEMKAALRL 87
                7999*********************986 PP

  == domain 2  score: 19.7 bits;  conditional E-value: 1.9e-07
                 HHHHHHHHHTTTSSSEEEHHHHHHH CS
   EF-hand_1   1 elkeiFrefDkDgdGkIdfeEfkel 25 
                 e++e+F ++D D++G+I++ Ef+e+
  KOO25101.1  96 EIEELFTLVDLDRNGTIEWGEFLEY 120
                 799*******************986 PP

  == domain 3  score: -1.5 bits;  conditional E-value: 1.1
                 HHHHHHHHTTTSSS CS
   EF-hand_1   2 lkeiFrefDkDgdG 15 
                  +e+ +++D  g+G
  KOO25101.1 184 AEEFCNVLDPQGTG 197
                 45566666666666 PP

>> EF-hand_6  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.0   0.1   1.1e-09   2.5e-06       1      31 []      60      89 ..      60      89 .. 0.94
   2 !   14.5   0.1   1.1e-05     0.024       1      23 [.      96     118 ..      96     120 .. 0.92

  Alignments for each domain:
  == domain 1  score: 27.0 bits;  conditional E-value: 1.1e-09
   EF-hand_6  1 elreaFklfDkdgdGkidaeElrkalrkalg 31
                elr +F++fD dg+G+++ +E+++alr ++g
  KOO25101.1 60 ELRMLFDQFDSDGSGQLSEAEMKAALR-LMG 89
                699************************.665 PP

  == domain 2  score: 14.5 bits;  conditional E-value: 1.1e-05
   EF-hand_6   1 elreaFklfDkdgdGkidaeElr 23 
                 e++e+F l D d++G+i + E+ 
  KOO25101.1  96 EIEELFTLVDLDRNGTIEWGEFL 118
                 689******************96 PP

>> EF-hand_8  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.1   5.3e-06     0.012      27      50 ..      60      83 ..      49      86 .. 0.89
   2 !   33.7   0.1   1.1e-11   2.4e-08       2      51 ..      73     120 ..      73     122 .. 0.96

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 5.3e-06
   EF-hand_8 27 evdilfrefDtdgdGkisfeEFcv 50
                e+++lf+ fD dg+G +s  E  +
  KOO25101.1 60 ELRMLFDQFDSDGSGQLSEAEMKA 83
                89*****************99765 PP

  == domain 2  score: 33.7 bits;  conditional E-value: 1.1e-11
   EF-hand_8   2 kgkItreelrrilrilglkkglseeevdilfrefDtdgdGkisfeEFcvl 51 
                 +g+++ +e++ +lr++g +   s+ee+++lf ++D+d++G+i + EF+++
  KOO25101.1  73 SGQLSEAEMKAALRLMGVA--KSDEEIEELFTLVDLDRNGTIEWGEFLEY 120
                 599****************..8*************************976 PP

>> EF-hand_5  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.1   2.2e-06    0.0049       4      23 ..      64      83 ..      61      85 .. 0.90
   2 !   10.0   0.1   0.00021      0.47       1      21 [.      97     117 ..      97     120 .. 0.89

  Alignments for each domain:
  == domain 1  score: 16.3 bits;  conditional E-value: 2.2e-06
                HHHHH-SS-SSCE-HHHHHH CS
   EF-hand_5  4 tFqaiDlNgDGkIskeELkt 23
                +F+++D +g+G++s  E k+
  KOO25101.1 64 LFDQFDSDGSGQLSEAEMKA 83
                6****************986 PP

  == domain 2  score: 10.0 bits;  conditional E-value: 0.00021
                 HHHHHHHH-SS-SSCE-HHHH CS
   EF-hand_5   1 lkdtFqaiDlNgDGkIskeEL 21 
                 ++++F  +Dl++ G+I   E+
  KOO25101.1  97 IEELFTLVDLDRNGTIEWGEF 117
                 567999************999 PP

>> EF-hand_9  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.1   0.0    0.0015       3.4       3      59 ..      64     118 ..      62     120 .. 0.89
   2 ?    3.5   0.0     0.042        94      36      49 ..     183     196 ..     165     207 .. 0.65

  Alignments for each domain:
  == domain 1  score: 8.1 bits;  conditional E-value: 0.0015
   EF-hand_9   3 vFevcDtqktGrVpvsrlidyLravtaqdpeeseLeelakelDPdgedasvdldtfl 59 
                 +F+ +D +  G+   +++++ Lr ++  + ++ e+eel  ++D d + ++++   fl
  KOO25101.1  64 LFDQFDSDGSGQLSEAEMKAALRLMGV-AKSDEEIEELFTLVDLDRN-GTIEWGEFL 118
                 799************************.99999********998877.777776665 PP

  == domain 2  score: 3.5 bits;  conditional E-value: 0.042
   EF-hand_9  36 eLeelakelDPdge 49 
                 e ee+++ lDP+g 
  KOO25101.1 183 EAEEFCNVLDPQGT 196
                 55777777777776 PP

>> EF-hand_14  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   7.2e-05      0.16       4      43 ..      63     102 ..      62     113 .. 0.93

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 7.2e-05
  EF-hand_14   4 llfdlfkdeetdklsvakllkaLaetGirkdDpRLkellk 43 
                 +lfd f+++++++ls a++ +aL+ +G+ k+D  ++el++
  KOO25101.1  63 MLFDQFDSDGSGQLSEAEMKAALRLMGVAKSDEEIEELFT 102
                 69********************************999986 PP

>> SPARC_Ca_bdg  Secreted protein acidic and rich in cysteine Ca binding region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   0.00018       0.4      35     111 ..      40     118 ..       5     119 .. 0.79

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00018
  SPARC_Ca_bdg  35 ehleelekkeeeknlkeckepvawkFsklDtnsdkvlsksELap.lrap.lvklehCikpflescDadkdkkislkEwc 111
                   e+    +++  ++ +++   +++  F+++D +  + ls++E+++ lr+  + k ++ i+++++  D+d++++i+  E+ 
    KOO25101.1  40 EAIPPGQSELVQQLTPQQYGELRMLFDQFDSDGSGQLSEAEMKAaLRLMgVAKSDEEIEELFTLVDLDRNGTIEWGEFL 118
                   445556677778888888899999******************8525543278999******************999986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (570 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       644  (0.0359195); expected 358.6 (0.02)
Passed bias filter:                      381  (0.0212505); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.53u 0.26s 00:00:00.79 Elapsed: 00:00:00.40
# Mc/sec: 4226.87
//
Query:       KOO25102.1  [L=166]
Description: hypothetical protein Ctob_002408 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
     0.0063   15.6   0.6     0.0066   15.6   0.6    1.1  1  Atg14     Vacuolar sorting 38 and autophagy-related subunit 1
  ------ inclusion threshold ------
      0.049   14.0   1.0      0.066   13.6   1.0    1.2  1  Bud13     Pre-mRNA-splicing factor of RES complex
       0.11   12.6   4.6       0.19   11.8   4.6    1.4  1  GvpG      Gas vesicle protein G
       0.31   11.3   3.8       0.67   10.2   0.3    2.3  2  XhlA      Haemolysin XhlA
       0.42   11.0   6.3         14    6.1   6.3    2.1  1  Nnf1      Nnf1
        1.3    9.4   6.3        6.7    7.1   0.4    2.2  2  Csm1_N    Csm1 N-terminal domain
        4.3    8.0   7.3       0.97   10.1   0.2    2.7  3  DUF2599   Protein of unknown function (DUF2599)
        5.8    7.2   5.8        1.7    9.0   0.9    2.0  2  Spc24     Spc24 subunit of Ndc80


Domain annotation for each model (and alignments):
>> Atg14  Vacuolar sorting 38 and autophagy-related subunit 14
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.6   2.9e-06    0.0066      53     128 ..      43     122 ..       9     156 .. 0.75

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 2.9e-06
       Atg14  53 e.....eaeqledkiknkkakleelksliadlrerlqelkdklsqlkkeieekkkklaklsdklkkRrsdleslqneleer 128
                 +     ++ +l+++++ k++k+e + ++    r+r+ el+++l++ +  + e +k+l+++  +lk+ ++ l+ l++   e+
  KOO25102.1  43 QsgggtDVRKLQAEAEAKANKAEAKAIEAKAMRARVGELQAQLTNGTI-TPEGRKELERYEVQLKELNEALKELNEAADEA 122
                 24566678899********************************99765.6789***********97777777776665554 PP

>> Bud13  Pre-mRNA-splicing factor of RES complex
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   1.0   2.9e-05     0.066      12      94 ..      48     129 ..      42     154 .. 0.74

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 2.9e-05
       Bud13  12 idlee.kreaeaekkkkeeeekeekkkewgkGlvqkeekekrleelekekkkplaryadd.edlneelkekerwdDPmaaflkkk 94 
                 +d+++ ++eaea+ +k+e+++ e+k+++++ G+ q + ++  +     e +k+l ry+ + ++lne+lke +++ D +a  ++  
  KOO25102.1  48 TDVRKlQAEAEAKANKAEAKAIEAKAMRARVGELQAQLTNGTITP---EGRKELERYEVQlKELNEALKELNEAADEAALGVQMA 129
                 566665666788888888888899999999999999998888774...455667777654399********99999988766644 PP

>> GvpG  Gas vesicle protein G
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   4.6   8.4e-05      0.19      21      75 ..      62     119 ..      51     125 .. 0.70

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 8.4e-05
        GvpG  21 eraeeqlddqenlrkeLaaLqqeLdaGeIdee...eFdrrEeelLdrLealerleaes 75 
                 ++ae+++ + +++r++  +Lq +L +G I+ e   e +r E +l +  eal++l+++ 
  KOO25102.1  62 NKAEAKAIEAKAMRARVGELQAQLTNGTITPEgrkELERYEVQLKELNEALKELNEAA 119
                 679999999********************96533345555544444444444444332 PP

>> XhlA  Haemolysin XhlA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.1   0.3       0.1   2.3e+02      22      37 ..      56      71 ..      48      86 .. 0.70
   2 ?   10.2   0.3    0.0003      0.67       4      40 ..      96     132 ..      93     145 .. 0.81

  Alignments for each domain:
  == domain 1  score: 2.1 bits;  conditional E-value: 0.1
        XhlA 22 kleekaaeaeekiknl 37
                + e ka++ae+k++++
  KOO25102.1 56 EAEAKANKAEAKAIEA 71
                4577777777776654 PP

  == domain 2  score: 10.2 bits;  conditional E-value: 0.0003
        XhlA   4 erlerietkldnleervdkleekaaeaeekiknleed 40 
                 ++ler e +l++l+e +++l+e a+ea   ++ + ++
  KOO25102.1  96 KELERYEVQLKELNEALKELNEAADEAALGVQMAAHT 132
                 789**********************998666666655 PP

>> Nnf1  Nnf1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.1   6.3    0.0062        14      38      98 ..      21      85 ..      19     127 .. 0.79

  Alignments for each domain:
  == domain 1  score: 6.1 bits;  conditional E-value: 0.0062
                HHHHHHHHHCCHH-T..............TTSSTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
        Nnf1 38 LDdlieeAkerreegeeeasrpe....vpphtLpPeeliaahlapakkeeqeeLearlqeleaen 98
                L++li+   +     +++a+ ++    +++ +L++e  ++a+ a+ak+ e ++++ar+ el+a+ 
  KOO25102.1 21 LEKLISPRDDTSGGVSTNAEVGQsgggTDVRKLQAEAEAKANKAEAKAIEAKAMRARVGELQAQL 85
                77777766644444333333333455577889999999999999999999999999999999985 PP

>> Csm1_N  Csm1 N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.1   0.4     0.003       6.7      22      58 ..      50      86 ..      48      91 .. 0.92
   2 ?    5.1   0.9     0.012        28      41      65 ..      96     120 ..      91     125 .. 0.56

  Alignments for each domain:
  == domain 1  score: 7.1 bits;  conditional E-value: 0.003
      Csm1_N 22 vsklvhENsvLsqkletkdqeiesLkeqlaeleekvk 58
                v kl  E   +++k e k  e +++++++ el++++ 
  KOO25102.1 50 VRKLQAEAEAKANKAEAKAIEAKAMRARVGELQAQLT 86
                789999999************************9975 PP

  == domain 2  score: 5.1 bits;  conditional E-value: 0.012
      Csm1_N  41 qeiesLkeqlaeleekvkeleerrk 65 
                 +e+e+ + ql+el+e +kel+e ++
  KOO25102.1  96 KELERYEVQLKELNEALKELNEAAD 120
                 4555555555555555555554443 PP

>> DUF2599  Protein of unknown function (DUF2599)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.2   0.1      0.72   1.6e+03      28      54 ..      59      85 ..      46      89 .. 0.59
   2 ?   10.1   0.2   0.00043      0.97      33      78 ..     106     152 ..      85     156 .. 0.73
   3 ?    1.0   0.5       0.3   6.7e+02      52      58 ..     154     160 ..     152     164 .. 0.87

  Alignments for each domain:
  == domain 1  score: -0.2 bits;  conditional E-value: 0.72
     DUF2599 28 aaaaeaawaevlalepdadtagmraQf 54
                a+a++a  + + a++ +a +++++aQ+
  KOO25102.1 59 AKANKAEAKAIEAKAMRARVGELQAQL 85
                334444444455555666788888886 PP

  == domain 2  score: 10.1 bits;  conditional E-value: 0.00043
     DUF2599  33 aawaevla.lepdadtagmraQfvCHwefaelvapdkasWnLepwRp 78 
                 +  +e l+ l++ ad a +  Q + H++ + + + +  sW   +wR 
  KOO25102.1 106 KELNEALKeLNEAADEAALGVQMAAHTDSTIVSNTQTVSWRYSVWRA 152
                 33333333255667*****************9*************97 PP

  == domain 3  score: 1.0 bits;  conditional E-value: 0.3
     DUF2599  52 aQfvCHw 58 
                 +Q+ CHw
  KOO25102.1 154 HQYLCHW 160
                 6*****9 PP

>> Spc24  Spc24 subunit of Ndc80
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.7   0.3      0.28   6.4e+02      17      40 ..      61      84 ..      48      92 .. 0.45
   2 ?    9.0   0.9   0.00074       1.7      18      54 ..      96     136 ..      91     155 .. 0.66

  Alignments for each domain:
  == domain 1  score: 0.7 bits;  conditional E-value: 0.28
       Spc24 17 eselesleselaelkeeleeleee 40
                 +++e+   e + +++++ el+ +
  KOO25102.1 61 ANKAEAKAIEAKAMRARVGELQAQ 84
                222233333334444444444443 PP

  == domain 2  score: 9.0 bits;  conditional E-value: 0.00074
       Spc24  18 selesleselaelkeeleeleeesee...........keservedetl 54 
                 +ele+ e +l+el+e l+el+e   e           +       +t+
  KOO25102.1  96 KELERYEVQLKELNEALKELNEAADEaalgvqmaahtD-------STI 136
                 689999***************99999666554443322.......222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (166 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1883  (0.105025); expected 358.6 (0.02)
Passed bias filter:                      969  (0.0540465); expected 358.6 (0.02)
Passed Vit filter:                       112  (0.00624686); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.53u 0.27s 00:00:00.80 Elapsed: 00:00:00.45
# Mc/sec: 1099.97
//
Query:       KOO25103.1  [L=394]
Description: aspartyl-tRNA synthetase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.2e-13   51.0   2.3      8e-12   45.1   0.0    3.5  4  Hydrolase_like  HAD-hyrolase-like
    5.2e-11   42.5   0.0    2.9e-10   40.2   0.0    2.3  2  Hydrolase_6     Haloacid dehalogenase-like hydrolase
  ------ inclusion threshold ------
       0.12   12.8   0.0       0.23   11.8   0.0    1.4  1  ERGIC_N         Endoplasmic Reticulum-Golgi Intermediate Comp


Domain annotation for each model (and alignments):
>> Hydrolase_like  HAD-hyrolase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.0       0.8   4.8e+03      40      57 ..      48      65 ..      47      74 .. 0.78
   2 ?    3.8   0.0      0.01        62      18      44 ..     111     137 ..      76     141 .. 0.82
   3 ?   -3.2   0.4       1.6   9.4e+03      37      56 ..     157     176 ..     156     187 .. 0.63
   4 !   45.1   0.0   1.3e-15     8e-12       2      75 .]     289     375 ..     288     375 .. 0.91

  Alignments for each domain:
  == domain 1  score: -2.3 bits;  conditional E-value: 0.8
                    HCT-EEEEESSSSS-TTT CS
  Hydrolase_like 40 naGwksvLVltGvtrped 57
                    +a++ +v+V+ G  + ++
      KOO25103.1 48 EAKMPFVFVTNGGGGLTE 65
                    68999*****99766555 PP

  == domain 2  score: 3.8 bits;  conditional E-value: 0.01
                     ---GGGEEEEES-TTTHHHHHHHCT-E CS
  Hydrolase_like  18 gsdpeevlmiGDrlatDiagAnnaGwk 44 
                     +++ ++vl+iGD  ++ ++ A+n+G+k
      KOO25103.1 111 SLAEGAVLIIGDPKEQVLQVAHNYGLK 137
                     556789*******999999******97 PP

  == domain 3  score: -3.2 bits;  conditional E-value: 1.6
                     HHHHCT-EEEEESSSSS-TT CS
  Hydrolase_like  37 gAnnaGwksvLVltGvtrpe 56 
                     gA++ G +  +V+t + +++
      KOO25103.1 157 GAREGGHSHTAVATTAVSNA 176
                     78888877777776444433 PP

  == domain 4  score: 45.1 bits;  conditional E-value: 1.3e-15
                     .STTSSHHHHHHHHHH.......---GGGEEEEES-TTTHHHHHHHCT.........-EEEEESSSSS-TTTHHHHHHHHT---SEEES- CS
  Hydrolase_like   2 lgKPepemydfalevl.......gsdpeevlmiGDrlatDiagAnnaG.........wksvLVltGvtrpedleepehkptyvaddlaea 75 
                     +gKP+  +++f  ++l       +++ e+ +m+GD++ +Di+g ++           w++vLV+tGv++ +d      ++t+v+d + +a
      KOO25103.1 289 WGKPTDATFRFVEQRLrelapmpHATTERFYMVGDNPTSDIEGTRRSNivhkstctsWDGVLVRTGVYKSGDET---NGATVVVDGIGDA 375
                     8****************999999999********************99888888888999**********9944...7899999998875 PP

>> Hydrolase_6  Haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.2   0.0   4.8e-14   2.9e-10       1     101 []      21     137 ..      21     137 .. 0.83
   2 ?   -3.3   0.0       1.6   9.8e+03       6      12 ..     347     353 ..     344     384 .. 0.63

  Alignments for each domain:
  == domain 1  score: 40.2 bits;  conditional E-value: 4.8e-14
                  EEEESTTTSEETTEE-TTHHHHHHHHHHTT-EEEEEE--.-SS-HHHHHHHH.HHTT---............-GGGEEEHHHHHHHHHHHHSXXXEEE CS
  Hydrolase_6   1 flfDidGvLwrgdkaipgaaealnalraagkpvvllTNn.sskseeeyakkl.eklgvdi............teeqvvtsataaaeylkkrkadkkvl 84 
                  ++fDidGv+  g++  +   +al+ +++a++p+v++TN+ ++ +e +ya  + +k+                + +++v s+t+ + +l+   a++ vl
   KOO25103.1  21 IAFDIDGVFKYGREWSKDGLRALQKVTEAKMPFVFVTNGgGGLTEASYASSMsSKIRAASslpekertdviiDGSRMVLSYTPWQSLLAPSLAEGAVL 118
                  68************************************9667889999988855565442344444444443556*********************** PP

                  EESX..HHHHHHHHHTTXE CS
  Hydrolase_6  85 vige..eglreelkeagfk 101
                  +ig   e+++++++++g+k
   KOO25103.1 119 IIGDpkEQVLQVAHNYGLK 137
                  ***94458*********86 PP

  == domain 2  score: -3.3 bits;  conditional E-value: 1.6
                  TTTSEET CS
  Hydrolase_6   6 dGvLwrg 12 
                  dGvL+r 
   KOO25103.1 347 DGVLVRT 353
                  8888853 PP

>> ERGIC_N  Endoplasmic Reticulum-Golgi Intermediate Compartment (ERGIC)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   3.8e-05      0.23      60      82 ..     219     241 ..     194     247 .. 0.80

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 3.8e-05
                 SEEEEEEEEEE.SS-GGGEEEEE CS
     ERGIC_N  60 ekleinlditfpalpCellsldv 82 
                 + l++++d+t+p +pC++ + dv
  KOO25103.1 219 TPLTVEFDVTVPPMPCHFSNPDV 241
                 6699*************988877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (394 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       378  (0.0210832); expected 358.6 (0.02)
Passed bias filter:                      353  (0.0196888); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.46u 0.27s 00:00:00.73 Elapsed: 00:00:00.42
# Mc/sec: 2847.21
//
Query:       KOO25104.1  [L=3842]
Description: small gtp-binding protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    4.2e-11   42.5  10.2    1.5e-07   31.1   1.0    8.4  8  LRR_8          Leucine rich repeat
    6.2e-11   42.4  42.4     0.0005   20.4   1.7    9.9 11  LRR_4          Leucine Rich repeats (2 copies)
    6.5e-10   39.3   0.0    2.5e-09   37.4   0.0    2.0  2  Roc            Ras of Complex, Roc, domain of DAPkinase
    3.3e-08   33.7   0.1        1.8    8.9   0.0    5.7  5  SH3_3          Bacterial SH3 domain
    9.9e-07   28.3   4.4    0.00031   20.6   0.2   13.9 18  LRR_6          Leucine Rich repeat
    1.4e-05   24.8   0.0    0.00018   21.1   0.0    2.3  2  Ras            Ras family
     0.0016   18.3   0.0     0.0038   17.1   0.0    1.6  1  COR            C-terminal of Roc, COR, domain
      0.002   17.5   0.0       0.34   10.2   0.0    2.6  2  ART            NAD:arginine ADP-ribosyltransferase
  ------ inclusion threshold ------
      0.016   15.6   1.9      0.048   14.0   0.1    2.8  2  AAA_19         AAA domain
      0.018   14.6   2.2      0.087   12.3   1.1    2.5  1  LRR_9          Leucine-rich repeat
      0.081   13.4   0.0       0.67   10.4   0.0    2.7  2  AAA            ATPase family associated with various cellular
      0.086   12.0   0.0        0.2   10.8   0.0    1.5  1  G-alpha        G-protein alpha subunit
       0.26   12.0   1.9        1.7    9.4   1.9    2.4  1  RBR            RNA binding Region
        3.2    8.7  23.6         18    6.4   0.0   10.1 10  LRR_1          Leucine Rich Repeat


Domain annotation for each model (and alignments):
>> LRR_8  Leucine rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.1       3.2   4.1e+03      50      59 ..    1940    1949 ..    1936    1951 .. 0.68
   2 ?    3.0   4.2     0.066        85      27      61 .]    1972    2012 ..    1964    2012 .. 0.54
   3 ?   -1.0   0.0       1.2   1.5e+03      24      36 ..    2027    2039 ..    2022    2039 .. 0.80
   4 ?    1.7   0.0      0.17   2.2e+02      30      61 .]    2409    2441 ..    2406    2441 .. 0.82
   5 ?   -1.2   0.1       1.4   1.8e+03      26      40 ..    2503    2517 ..    2497    2539 .. 0.67
   6 ?   -1.8   2.9       2.1   2.7e+03      27      59 ..    2645    2681 ..    2615    2682 .. 0.54
   7 !   27.1   2.5     2e-09   2.5e-06       3      61 .]    2732    2787 ..    2730    2787 .. 0.95
   8 !   31.1   1.0   1.2e-10   1.5e-07       3      61 .]    2800    2856 ..    2798    2856 .. 0.94

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 3.2
                  S-.EEE--SS CS
       LRR_8   50 sLrsLdLsgN 59  
                  +L+sL L+gN
  KOO25104.1 1940 KLQSLSLNGN 1949
                  6777777777 PP

  == domain 2  score: 3.0 bits;  conditional E-value: 0.066
                  --EEE--SS---GGGGGG......GTT--S-.EEE--SS-- CS
       LRR_8   27 LkvLdLsnNllttlspga......fsgLpsLrsLdLsgNrL 61  
                  L+ L+L+nN++  ++ ++      +s+ + L++LdLs+N+L
  KOO25104.1 1972 LQFLSLKNNSIGNMHTEMrkfsrgLSSNKTLTHLDLSNNQL 2012
                  55555666665555543222211155566666666666665 PP

  == domain 3  score: -1.0 bits;  conditional E-value: 1.2
                  -TT--EEE--SS- CS
       LRR_8   24 lsnLkvLdLsnNl 36  
                  + +L  LdLs+N+
  KOO25104.1 2027 CISLLRLDLSYNT 2039
                  668999****995 PP

  == domain 4  score: 1.7 bits;  conditional E-value: 0.17
                  EE--SS---G.GGGGGGTT--S-.EEE--SS-- CS
       LRR_8   30 LdLsnNlltt.lspgafsgLpsLrsLdLsgNrL 61  
                  L++ nN+++  + ++a    +sL+sLd++gN++
  KOO25104.1 2409 LEIPNNQISGtVLARAVKVNKSLTSLDIRGNPI 2441
                  6777888887777888888999*******9987 PP

  == domain 5  score: -1.2 bits;  conditional E-value: 1.4
                  T--EEE--SS---GG CS
       LRR_8   26 nLkvLdLsnNllttl 40  
                   L++LdLs  ++++ 
  KOO25104.1 2503 TLTELDLSATSIDHA 2517
                  566666666665554 PP

  == domain 6  score: -1.8 bits;  conditional E-value: 2.1
                  --EEE--SS---....GGGGGGGTT--S-.EEE--SS CS
       LRR_8   27 LkvLdLsnNllt....tlspgafsgLpsLrsLdLsgN 59  
                   ++L+L +N+l     tl  + ++ ++sL sLdL +N
  KOO25104.1 2645 ITELNLASNELGpdgmTLIVNQLHACSSLNSLDLCNN 2681
                  5555555555522222333455555555555555444 PP

  == domain 7  score: 27.1 bits;  conditional E-value: 2e-09
                  -SEEE-TTS--SEE-TTSSTT-TT--EEE--SS---GGGGGGGTT--S-.EEE--SS-- CS
       LRR_8    3 LtsLdLsnNrltslddeaFkglsnLkvLdLsnNllttlspgafsgLpsLrsLdLsgNrL 61  
                  L++L+L++N++++l+  +  +ls+LkvL+L +N+lt + p+ + +L++L+ L ++ N+L
  KOO25104.1 2732 LEKLHLDSNQISELPTVC--NLSSLKVLSLQSNRLTAM-PEDIGSLRQLKRLSMRANKL 2787
                  99************9876..68****************.9*****************98 PP

  == domain 8  score: 31.1 bits;  conditional E-value: 1.2e-10
                  -SEEE-TTS--SEE-TTSSTT-TT--EEE--SS---GGGGGGGTT--S-.EEE--SS-- CS
       LRR_8    3 LtsLdLsnNrltslddeaFkglsnLkvLdLsnNllttlspgafsgLpsLrsLdLsgNrL 61  
                  L+ LdL+ N+lt l+    + l++Lk+LdL +N l++l + a+ +L+ L++L L+gN+L
  KOO25104.1 2800 LEFLDLRANKLTYLPTAIGQ-LRSLKSLDLADNVLQRL-EIAICDLRMLEKLELQGNPL 2856
                  777***********988888.*****************.5*****************97 PP

>> LRR_4  Leucine Rich repeats (2 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.7   0.2      0.63     8e+02      22      33 ..    1938    1949 ..    1927    1952 .. 0.75
   2 ?    2.6   0.9      0.15   1.9e+02       2      37 ..    1940    1983 ..    1939    1987 .. 0.60
   3 !   14.3   0.2   3.4e-05     0.043       2      34 ..    2001    2039 ..    2000    2043 .. 0.79
   4 ?   -2.3   0.1       5.4   6.9e+03       2      15 ..    2345    2358 ..    2344    2388 .. 0.51
   5 !    7.0   0.1    0.0064       8.2       8      38 ..    2411    2443 ..    2407    2447 .. 0.74
   6 ?   -1.1   0.0       2.3   2.9e+03      22      39 ..    2501    2514 ..    2493    2523 .. 0.73
   7 ?    1.7   1.4      0.31   3.9e+02       3      33 ..    2645    2681 ..    2643    2683 .. 0.68
   8 !   20.4   1.7   3.9e-07    0.0005       2      38 ..    2731    2766 ..    2730    2775 .. 0.84
   9 !   15.9   0.2   9.9e-06     0.013       2      39 ..    2753    2790 ..    2752    2794 .. 0.84
  10 !   16.9   0.3   4.9e-06    0.0063       2      37 ..    2799    2834 ..    2799    2840 .. 0.85
  11 ?   -0.3   0.0       1.3   1.6e+03       2      24 ..    2845    2870 ..    2844    2873 .. 0.68

  Alignments for each domain:
  == domain 1  score: 0.7 bits;  conditional E-value: 0.63
                  -TT--EEE-.-S CS
       LRR_4   22 lpnLkeLdLsgN 33  
                  +++L++L+L+gN
  KOO25104.1 1938 NDKLQSLSLNGN 1949
                  667788888777 PP

  == domain 2  score: 2.6 bits;  conditional E-value: 0.15
                  S--EEE--SS---E-S-.....HH....H-TT--EEE-.-S---- CS
       LRR_4    2 nLevLdLsnNqltdipl.....le....klpnLkeLdLsgNnlit 37  
                  +L++L+L++N + +        l+      + L+ L+L  Nn i+
  KOO25104.1 1940 KLQSLSLNGNGVGERAAvdaagLGtmlvTSTALQFLSL-KNNSIG 1983
                  68888888888663333344332244446777888888.665554 PP

  == domain 3  score: 14.3 bits;  conditional E-value: 3.4e-05
                  S--EEE--SS---.E-S-.......HHH-TT--EEE-.-S- CS
       LRR_4    2 nLevLdLsnNqlt.dipl.......leklpnLkeLdLsgNn 34  
                   L++LdLsnNql  d  +       l+ + +L  LdLs N+
  KOO25104.1 2001 TLTHLDLSNNQLGpD--GvrsvcvaLRTCISLLRLDLSYNT 2039
                  69*********7755..54455556779*********9994 PP

  == domain 4  score: -2.3 bits;  conditional E-value: 5.4
                  S--EEE--SS---E CS
       LRR_4    2 nLevLdLsnNqltd 15  
                  +L++LdL +  l d
  KOO25104.1 2345 SLRTLDLTGIGLAD 2358
                  56666666555544 PP

  == domain 5  score: 7.0 bits;  conditional E-value: 0.0064
                  --SS---E-S-HH..H.-TT--EEE-.-S----- CS
       LRR_4    8 LsnNqltdiplle..k.lpnLkeLdLsgNnlitd 38  
                  + nNq++   l +  k +++L++Ld+ gN +i+d
  KOO25104.1 2411 IPNNQISGTVLARavKvNKSLTSLDIRGN-PIDD 2443
                  559999976663357889********888.6654 PP

  == domain 6  score: -1.1 bits;  conditional E-value: 2.3
                  -TT--EEE-.-S-----G CS
       LRR_4   22 lpnLkeLdLsgNnlitdl 39  
                  ++ L+eLdLs      ++
  KOO25104.1 2501 NTTLTELDLSAT----SI 2514
                  667888888776....55 PP

  == domain 7  score: 1.7 bits;  conditional E-value: 0.31
                  --EEE--SS-.....--E-S-.HHH-TT--EEE-.-S CS
       LRR_4    3 LevLdLsnNq.....ltdipl.leklpnLkeLdLsgN 33  
                   ++L+L++N      +t i + l  + +L +LdL +N
  KOO25104.1 2645 ITELNLASNElgpdgMTLIVNqLHACSSLNSLDLCNN 2681
                  6899999998566663322223556********9555 PP

  == domain 8  score: 20.4 bits;  conditional E-value: 3.9e-07
                  S--EEE--SS---E-S-.HHH-TT--EEE-.-S----- CS
       LRR_4    2 nLevLdLsnNqltdipl.leklpnLkeLdLsgNnlitd 38  
                   Le+L+L +Nq++++p  ++ l +Lk+L+L +N ++t 
  KOO25104.1 2731 MLEKLHLDSNQISELPTvCN-LSSLKVLSLQSN-RLTA 2766
                  69***************555.*********666.7754 PP

  == domain 9  score: 15.9 bits;  conditional E-value: 9.9e-06
                  S--EEE--SS---E-S-.HHH-TT--EEE-.-S-----G CS
       LRR_4    2 nLevLdLsnNqltdipl.leklpnLkeLdLsgNnlitdl 39  
                  +L+vL+L++N+lt  p  +++l +Lk L++  N ++  +
  KOO25104.1 2753 SLKVLSLQSNRLTAMPEdIGSLRQLKRLSMRAN-KLIEI 2790
                  7*************9996667*********556.65555 PP

  == domain 10  score: 16.9 bits;  conditional E-value: 4.9e-06
                  S--EEE--SS---E-S-.HHH-TT--EEE-.-S---- CS
       LRR_4    2 nLevLdLsnNqltdipl.leklpnLkeLdLsgNnlit 37  
                  +Le+LdL+ N+lt +p  +++l +Lk+LdL +N  ++
  KOO25104.1 2799 SLEFLDLRANKLTYLPTaIGQLRSLKSLDLADN-VLQ 2834
                  69******88*******7777*********777.555 PP

  == domain 11  score: -0.3 bits;  conditional E-value: 1.3
                  S--EEE--SS---E-S-HH....H-TT CS
       LRR_4    2 nLevLdLsnNqltdiplle....klpn 24  
                   Le+L L++N l+  pl +    +lp+
  KOO25104.1 2845 MLEKLELQGNPLQRPPL-AiakqGLPS 2870
                  599******99997444.223534666 PP

>> Roc  Ras of Complex, Roc, domain of DAPkinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.0       3.8   4.8e+03       8      31 ..    1118    1142 ..    1112    1152 .. 0.78
   2 !   37.4   0.0   1.9e-12   2.5e-09       1     119 [.    2890    3010 ..    2890    3011 .. 0.77

  Alignments for each domain:
  == domain 1  score: -2.3 bits;  conditional E-value: 3.8
                  TTSS.HHHHHHCHCT-CCC-EEETT CS
         Roc    8 sgvG.Ktsllkrfvedkfsekekst 31  
                  +g+G Kt ll+r++e+ +s k+ +t
  KOO25104.1 1118 NGSGdKTHLLTRYIESVYSGKKFET 1142
                  55555**********9999887666 PP

  == domain 2  score: 37.4 bits;  conditional E-value: 1.9e-12
                  EEEEESSTTSSHHHHHHCHCT..-CCC-EEETTTTEEEEEEECGGSGGCTTBTTTTCEEEEEEEE-SGGCTTTT-HHHHCTSCEEEEEEE....GHH CS
         Roc    1 KvvlvGdsgvGKtsllkrfve..dkfsekekstigvdfltkevtkikgvendkkvkkvklniWDtaGqerfrslhplylreaalailvyd....srs 91  
                  ++vl+G +++GKtsl + +     + sek + ti++d+++  +   +g       ++v l++WD+aGq ++ +  + y+ + +l++l++     s+ 
  KOO25104.1 2890 RLVLLGHGESGKTSLQRGLRYgaPRPSEKDERTIQLDIYSLLL--GEG------PDQVLLSMWDLAGQPQYAAGLQPYIVSGSLYLLLVPalqvSEL 2978
                  589************9866661155678888999999988644..222......35799**************99****999999998753434332 PP

                  HHC....HHHHHHHHHHHCSSS-EEEEEE-TT CS
         Roc   92 sen....lkeWlkelkkvagkspvilvgnkiD 119 
                  ++n    l +Wl+ l++ a++++v  v++++D
  KOO25104.1 2979 DANypdlLGRWLDYLQAGAPEAVVQPVITHCD 3010
                  3331112579********************99 PP

>> SH3_3  Bacterial SH3 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.9   0.0    0.0014       1.8       4      35 ..      67      98 ..      64     126 .. 0.76
   2 ?    5.4   0.0     0.017        22       5      32 ..     146     173 ..     145     204 .. 0.84
   3 ?    5.5   0.0     0.016        21      11      34 ..     299     322 ..     298     347 .. 0.84
   4 ?    5.3   0.0     0.019        24       5      32 ..     368     395 ..     367     425 .. 0.87
   5 ?   -0.2   0.0         1   1.3e+03       7      33 ..     918     944 ..     914     953 .. 0.79

  Alignments for each domain:
  == domain 1  score: 8.9 bits;  conditional E-value: 0.0014
       SH3_3  4 nvRsgPstssevigtlpyGekVevleetggge 35
                 vR++  +ss+++g lp G+ V+vle ++ ++
  KOO25104.1 67 IVRAAFELSSDKVGELPIGTNVTVLETRNQAD 98
                68999999******************999866 PP

  == domain 2  score: 5.4 bits;  conditional E-value: 0.017
       SH3_3   5 vRsgPstssevigtlpyGekVevleetg 32 
                 vR++  ++s+++g lp G+++ vle ++
  KOO25104.1 146 VRAAFELNSDKVGELPTGTRIHVLEVRD 173
                 6777789*****************9765 PP

  == domain 3  score: 5.5 bits;  conditional E-value: 0.016
       SH3_3  11 tssevigtlpyGekVevleetggg 34 
                 ++s ++g l+ G++V +le+++g 
  KOO25104.1 299 LNSAKVGELKTGTRVMLLECRRGS 322
                 699****************99885 PP

  == domain 4  score: 5.3 bits;  conditional E-value: 0.019
       SH3_3   5 vRsgPstssevigtlpyGekVevleetg 32 
                 vR++  ++s+++g lp G+++ vle ++
  KOO25104.1 368 VRAAFELNSDKVGELPTGTRIHVLEVRD 395
                 6777789*****************9765 PP

  == domain 5  score: -0.2 bits;  conditional E-value: 1
       SH3_3   7 sgPstssevigtlpyGekVevleetgg 33 
                 +g  ++ + +gtl++G  V+vle ++ 
  KOO25104.1 918 AGCEKDTDTVGTLNPGVMVNVLELRDA 944
                 5555666689************97665 PP

>> LRR_6  Leucine Rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.3   0.1      0.37   4.7e+02       2      16 ..    1938    1952 ..    1937    1954 .. 0.88
   2 ?   -2.4   0.1       5.6   7.1e+03       5      17 ..    1972    1984 ..    1969    1984 .. 0.87
   3 !   20.6   0.2   2.4e-07   0.00031       1      24 []    1998    2021 ..    1998    2021 .. 0.93
   4 ?    1.6   0.3      0.29   3.7e+02       2      13 ..    2027    2038 ..    2026    2039 .. 0.88
   5 ?   -3.1   0.2       9.3   1.2e+04       1      11 [.    2132    2142 ..    2132    2142 .. 0.87
   6 ?   -2.7   0.1       6.7   8.6e+03       2      10 ..    2209    2217 ..    2208    2219 .. 0.82
   7 ?   -2.9   0.2       8.1     1e+04       1      11 [.    2234    2244 ..    2234    2245 .. 0.84
   8 ?    4.3   0.1     0.039        50       3      23 ..    2344    2364 ..    2343    2365 .. 0.93
   9 ?   -0.5   0.3       1.4   1.7e+03       2      17 ..    2373    2388 ..    2372    2389 .. 0.91
  10 !   16.3   0.1   5.8e-06    0.0074       2      21 ..    2428    2447 ..    2427    2450 .. 0.90
  11 ?    4.8   0.1     0.027        35       1      11 [.    2500    2510 ..    2500    2515 .. 0.89
  12 !   13.6   0.0     4e-05     0.051       2      23 ..    2642    2663 ..    2641    2664 .. 0.92
  13 ?   -3.1   0.4         9   1.2e+04       2      10 ..    2670    2678 ..    2669    2681 .. 0.86
  14 ?    1.6   0.1       0.3   3.8e+02       3      16 ..    2730    2743 ..    2728    2743 .. 0.88
  15 ?    1.8   0.3      0.25   3.2e+02       2      16 ..    2751    2765 ..    2750    2766 .. 0.88
  16 ?   -2.5   0.1       5.9   7.6e+03       4      16 ..    2799    2811 ..    2797    2812 .. 0.87
  17 ?    4.2   0.1     0.041        53       3      15 ..    2821    2833 ..    2819    2834 .. 0.86
  18 ?   -1.5   0.0       2.8   3.6e+03       3      15 ..    2844    2856 ..    2843    2857 .. 0.86

  Alignments for each domain:
  == domain 1  score: 1.3 bits;  conditional E-value: 0.37
       LRR_6    2 nthLteLdLsgNdIg 16  
                  n +L++L+L+gN++g
  KOO25104.1 1938 NDKLQSLSLNGNGVG 1952
                  668*********987 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 5.6
       LRR_6    5 LteLdLsgNdIgD 17  
                  L+ L+L+ N Ig+
  KOO25104.1 1972 LQFLSLKNNSIGN 1984
                  788********96 PP

  == domain 3  score: 20.6 bits;  conditional E-value: 2.4e-07
       LRR_6    1 snthLteLdLsgNdIgDeGaeaLa 24  
                  sn +Lt+LdLs N++g +G+ + +
  KOO25104.1 1998 SNKTLTHLDLSNNQLGPDGVRSVC 2021
                  699*****************9876 PP

  == domain 4  score: 1.6 bits;  conditional E-value: 0.29
       LRR_6    2 nthLteLdLsgN 13  
                  + +L  LdLs+N
  KOO25104.1 2027 CISLLRLDLSYN 2038
                  789********9 PP

  == domain 5  score: -3.1 bits;  conditional E-value: 9.3
       LRR_6    1 snthLteLdLs 11  
                  +n+ Lt+L+L+
  KOO25104.1 2132 NNNVLTALNLA 2142
                  6999*****95 PP

  == domain 6  score: -2.7 bits;  conditional E-value: 6.7
       LRR_6    2 nthLteLdL 10  
                  n++Lt+L +
  KOO25104.1 2209 NPTLTSLTM 2217
                  9*****976 PP

  == domain 7  score: -2.9 bits;  conditional E-value: 8.1
       LRR_6    1 snthLteLdLs 11  
                  sn +LteL L 
  KOO25104.1 2234 SNVTLTELRLE 2244
                  589*****996 PP

  == domain 8  score: 4.3 bits;  conditional E-value: 0.039
       LRR_6    3 thLteLdLsgNdIgDeGaeaL 23  
                  ++L++LdL+g ++ D G+++L
  KOO25104.1 2344 SSLRTLDLTGIGLADRGGSKL 2364
                  69****************999 PP

  == domain 9  score: -0.5 bits;  conditional E-value: 1.4
       LRR_6    2 nthLteLdLsgNdIgD 17  
                  ++ L +L + +N++ D
  KOO25104.1 2373 CSMLNSLKIGDNKLAD 2388
                  789**********977 PP

  == domain 10  score: 16.3 bits;  conditional E-value: 5.8e-06
       LRR_6    2 nthLteLdLsgNdIgDeGae 21  
                  n +Lt+Ld++gN I+D G+ 
  KOO25104.1 2428 NKSLTSLDIRGNPIDDNGLF 2447
                  99****************96 PP

  == domain 11  score: 4.8 bits;  conditional E-value: 0.027
       LRR_6    1 snthLteLdLs 11  
                  +nt+LteLdLs
  KOO25104.1 2500 YNTTLTELDLS 2510
                  69********9 PP

  == domain 12  score: 13.6 bits;  conditional E-value: 4e-05
       LRR_6    2 nthLteLdLsgNdIgDeGaeaL 23  
                  n+ +teL+L++N++g +G++ +
  KOO25104.1 2642 NQMITELNLASNELGPDGMTLI 2663
                  999***************9877 PP

  == domain 13  score: -3.1 bits;  conditional E-value: 9
       LRR_6    2 nthLteLdL 10  
                  +++L +LdL
  KOO25104.1 2670 CSSLNSLDL 2678
                  89******9 PP

  == domain 14  score: 1.6 bits;  conditional E-value: 0.3
       LRR_6    3 thLteLdLsgNdIg 16  
                  + L++L+L +N+I+
  KOO25104.1 2730 SMLEKLHLDSNQIS 2743
                  78**********96 PP

  == domain 15  score: 1.8 bits;  conditional E-value: 0.25
       LRR_6    2 nthLteLdLsgNdIg 16  
                   ++L+ L+L++N ++
  KOO25104.1 2751 LSSLKVLSLQSNRLT 2765
                  589*********997 PP

  == domain 16  score: -2.5 bits;  conditional E-value: 5.9
       LRR_6    4 hLteLdLsgNdIg 16  
                  +L+ LdL+ N+++
  KOO25104.1 2799 SLEFLDLRANKLT 2811
                  7999****99987 PP

  == domain 17  score: 4.2 bits;  conditional E-value: 0.041
       LRR_6    3 thLteLdLsgNdI 15  
                  ++L++LdL++N +
  KOO25104.1 2821 RSLKSLDLADNVL 2833
                  89*********76 PP

  == domain 18  score: -1.5 bits;  conditional E-value: 2.8
       LRR_6    3 thLteLdLsgNdI 15  
                  + L++L+L+gN +
  KOO25104.1 2844 RMLEKLELQGNPL 2856
                  579********87 PP

>> Ras  Ras family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.7   0.0      0.27   3.5e+02      11      54 ..    1122    1164 ..    1112    1171 .. 0.82
   2 !   21.1   0.0   1.4e-07   0.00018       1      77 [.    2890    2968 ..    2890    2998 .. 0.88

  Alignments for each domain:
  == domain 1  score: 0.7 bits;  conditional E-value: 0.27
                  SHHHHHHHHHHSSCSSSCTTTSSEEEEEEEEEETTEEEEEEEEE CS
         Ras   11 GKtslllrfvkdkFkeeyesTigvdfytkeievdgkevkleiwD 54  
                   Kt ll+r++++ ++ ++ +T   d +++  e+++  v l+  D
  KOO25104.1 1122 DKTHLLTRYIESVYSGKKFETW-RDMLMQAYEMRSLIVLLDGVD 1164
                  39*******************9.999999999988877777655 PP

  == domain 2  score: 21.1 bits;  conditional E-value: 1.4e-07
                  EEEEEESTTSSHHHHH..HHHHHSSCSSSCTTTSSEEEEEEEEEETTEEEEEEEEEETTSGGGHHHHHHHHTTESEEEE CS
         Ras    1 KlvlvGdsavGKtsll..lrfvkdkFkeeyesTigvdfytkeievdgkevkleiwDTAGqeefkslrelyyrdaegill 77  
                  +lvl+G +  GKtsl   lr+   + +e+ e Ti  d y+  +     +v l++wD AGq ++ +  + y+ +++  ll
  KOO25104.1 2890 RLVLLGHGESGKTSLQrgLRYGAPRPSEKDERTIQLDIYSLLLGEGPDQVLLSMWDLAGQPQYAAGLQPYIVSGSLYLL 2968
                  58*************755799999***************************************9866666665555544 PP

>> COR  C-terminal of Roc, COR, domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   0.0     3e-06    0.0038      90     193 ..    3270    3385 ..    3245    3386 .. 0.91

  Alignments for each domain:
  == domain 1  score: 17.1 bits;  conditional E-value: 3e-06
         COR   90 kkGilkredlekiwkekeypaeehdlllelmekfelcyelee..eedtylvpqlLpeerpe.........leweeeeklelryqy.eflPkglisrl 174 
                  k+G l++e l   w+     ++   ++l +m    + +  e+  +++++++p  Lpe +p+          ++++ e l+l y++ ++ P+g+ +rl
  KOO25104.1 3270 KSGELREELLLLFWEPLGLHRDVYGEVLLMMSASGVLFLAEHtqHNRRWVMPMRLPEAQPAdaketwnesAKKPDFELLSLTYRLgRIAPPGIAERL 3366
                  56899999999999999999999999************99988899******************999888667777889****************** PP

         COR  175 ivrlhkfiedelvWrsGvv 193 
                  +     f + + +W++G+v
  KOO25104.1 3367 MASCYGFGRYHRFWKRGAV 3385
                  *****************98 PP

>> ART  NAD:arginine ADP-ribosyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.2   0.0   0.00026      0.34      56     119 ..    3616    3673 ..    3605    3740 .. 0.80
   2 ?    4.1   0.0     0.019        24     174     197 ..    3788    3811 ..    3784    3824 .. 0.88

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.00026
         ART   56 elpegfkdehgiAllaYtssselyrelneavreaGrsreeylsnfdfkalhfyLtraLqlLrkd 119 
                  +  +g+k+ h +Al +Y++s  +yr++n+ +   G s e     +++ al+  Lt+a  +Lr+ 
  KOO25104.1 3616 AAAAGLKRAHVLALRLYSTS--VYRSVNKPLHD-GCSPER---PHPYPALVSNLTEAFRKLRAA 3673
                  567899**************..**********6.777664...57899*************993 PP

  == domain 2  score: 4.1 bits;  conditional E-value: 0.019
         ART  174 lgvpIkefskfpsedevLIppfev 197 
                  +g++I +fs+fp+e+e   pp + 
  KOO25104.1 3788 FGADISAFSVFPHEKELYFPPCTY 3811
                  79******************9875 PP

>> AAA_19  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.1   3.8e-05     0.048       8      37 ..    1059    1088 ..    1053    1099 .. 0.85
   2 ?   -2.3   0.5         4   5.2e+03      36      61 ..    3738    3763 ..    3726    3772 .. 0.78

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 3.8e-05
      AAA_19    8 lkekvllvtaGpGtGKTrvlkhivallvel 37  
                  ++++++lv aGpGtGKT ++k++v  l + 
  KOO25104.1 1059 HSAQPVLVRAGPGTGKTWMTKQAVFTLADS 1088
                  7789****************9999877665 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 4
      AAA_19   36 elggvkpeeillvaftgrAakelrer 61  
                  +++ ++ +e + +a t+ Aa+ +re 
  KOO25104.1 3738 AAKVWASKEAMHLATTRTAASTIREH 3763
                  445556689999***********996 PP

>> LRR_9  Leucine-rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   1.1   6.8e-05     0.087      44     125 ..    2732    2810 ..    2703    2828 .. 0.79

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 6.8e-05
       LRR_9   44 fdtidlsdndirkldgfPllkrlktlllnnnrivriaegleevlPnleelvltnnelqeladldP.laslkklellsllknpv 125 
                  ++ ++l+ n+i +l  +  l  lk+l+l++nr++ + e+++ +l +l+ l +  n+l e   ++P +  l +le+l l  n +
  KOO25104.1 2732 LEKLHLDSNQISELPTVCNLSSLKVLSLQSNRLTAMPEDIG-SLRQLKRLSMRANKLIE---IHPsIGYLLSLEFLDLRANKL 2810
                  56778999*******************************98.58899999999987655...555134566777777766655 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.0   0.00053      0.67       2      83 ..    1065    1179 ..    1064    1192 .. 0.71
   2 ?   -2.7   0.0       5.8   7.4e+03      32      56 ..    1212    1256 ..    1198    1259 .. 0.62

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00053
                  EEESSTTSSHHHHHHHHHHHH..THEEEEEETTTCSSS.................................STTHHHHHHHHHHHHHHHTSTSEEEE CS
         AAA    2 llyGppGtGKTllakavakel..gvefleisgsellsk.................................yvgesekkirelfkeakekakpsilf 63  
                  l+   pGtGKT + k+ + +l  + +++      ++                                   y g++ +  r+++ +a e++   i++
  KOO25104.1 1065 LVRAGPGTGKTWMTKQAVFTLadSLRVIGKAREGIR-LvpmvvyvqrivyllrengsgdkthlltryiesvYSGKKFETWRDMLMQAYEMR-SLIVL 1159
                  66677********99988887442332222222222.1123444445555555567777778999999999*******************8.9**** PP

                  EETGGGHHHHHTTCCCHHHH CS
         AAA   64 iDEidalaksrsgseseeee 83  
                  +D +d+ a+ r++ e+ +++
  KOO25104.1 1160 LDGVDEAAGLRDDIETFVHK 1179
                  ********999444444444 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 5.8
                  TTCSSS....................STTHHHHHHHHHHHHHHHT CS
         AAA   32 sellsk....................yvgesekkirelfkeakek 56  
                   el+++                     +ge  k + e f+++ke 
  KOO25104.1 1212 CELTNEqqrrviniqmqgseffdhllSLGEVRKGLDEAFNRLKEA 1256
                  444433344444444444444444888999999999999998875 PP

>> G-alpha  G-protein alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   0.00016       0.2      13      59 ..    2880    2923 ..    2870    2933 .. 0.67

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00016
                  XXXXXXXE..EEEEEEEESTTSSHHHHHHHHHHHCS----HHHHHCC CS
     G-alpha   13 aerkarkkkrevkllllGqseSGKsTilkqlkllykkgfseeelatw 59  
                  +  +++++    +l+llG++eSGK+++++ l+ +  +  se++ +t+
  KOO25104.1 2880 KSGETTSN--AGRLVLLGHGESGKTSLQRGLR-YGAPRPSEKDERTI 2923
                  44444445..679****************999.33444444433553 PP

>> RBR  RNA binding Region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   1.9    0.0013       1.7      20      50 ..       5      37 ..       2      42 .. 0.68

  Alignments for each domain:
  == domain 1  score: 9.4 bits;  conditional E-value: 0.0013
         RBR 20 lkgasekaaaaakneppk..ipKKRGpKPGsKr 50
                lk++++ +aa+ ++e+++  ++KK+G K+GsK 
  KOO25104.1  5 LKAKTARSAASEQTEEIVdsPTKKKGKKSGSKT 37
                5555555555555555533388**********5 PP

>> LRR_1  Leucine Rich Repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.0       4.2   5.4e+03       1      11 [.    1940    1950 ..    1940    1963 .. 0.91
   2 ?    6.4   0.0     0.014        18       2      13 ..    2002    2013 ..    2001    2025 .. 0.79
   3 ?   -0.7   0.0         3   3.8e+03       2      16 ..    2030    2044 ..    2029    2047 .. 0.77
   4 ?   -1.6   0.0       5.9   7.5e+03       1       9 [.    2345    2353 ..    2345    2370 .. 0.77
   5 ?    3.7   0.0      0.11   1.4e+02       1      13 [.    2430    2442 ..    2430    2456 .. 0.81
   6 ?   -1.1   0.1       3.9     5e+03       2      15 ..    2732    2745 ..    2731    2752 .. 0.82
   7 ?   -0.5   0.0       2.6   3.3e+03       1      13 [.    2753    2765 ..    2753    2774 .. 0.77
   8 ?   -1.9   0.0       7.5   9.6e+03       1      13 [.    2799    2811 ..    2799    2817 .. 0.82
   9 ?    1.6   0.1      0.53   6.7e+02       1      16 [.    2822    2837 ..    2822    2842 .. 0.83
  10 ?    2.3   0.0      0.32   4.1e+02       2      20 ..    2846    2863 ..    2845    2866 .. 0.85

  Alignments for each domain:
  == domain 1  score: -1.2 bits;  conditional E-value: 4.2
       LRR_1    1 nLrhLdLsnnp 11  
                  +L++L L++n 
  KOO25104.1 1940 KLQSLSLNGNG 1950
                  7********96 PP

  == domain 2  score: 6.4 bits;  conditional E-value: 0.014
       LRR_1    2 LrhLdLsnnpll 13  
                  L+hLdLsnn+l+
  KOO25104.1 2002 LTHLDLSNNQLG 2013
                  9*********95 PP

  == domain 3  score: -0.7 bits;  conditional E-value: 3
       LRR_1    2 LrhLdLsnnpllglp 16  
                  L +LdLs+n +++ p
  KOO25104.1 2030 LLRLDLSYNTPGREP 2044
                  779******986554 PP

  == domain 4  score: -1.6 bits;  conditional E-value: 5.9
       LRR_1    1 nLrhLdLsn 9   
                  +Lr+LdL++
  KOO25104.1 2345 SLRTLDLTG 2353
                  69*****86 PP

  == domain 5  score: 3.7 bits;  conditional E-value: 0.11
       LRR_1    1 nLrhLdLsnnpll 13  
                  +L++Ld+++np++
  KOO25104.1 2430 SLTSLDIRGNPID 2442
                  69*********83 PP

  == domain 6  score: -1.1 bits;  conditional E-value: 3.9
       LRR_1    2 LrhLdLsnnpllgl 15  
                  L++L+L +n+++ l
  KOO25104.1 2732 LEKLHLDSNQISEL 2745
                  99*******98544 PP

  == domain 7  score: -0.5 bits;  conditional E-value: 2.6
       LRR_1    1 nLrhLdLsnnpll 13  
                  +L++L L +n+l+
  KOO25104.1 2753 SLKVLSLQSNRLT 2765
                  69********993 PP

  == domain 8  score: -1.9 bits;  conditional E-value: 7.5
       LRR_1    1 nLrhLdLsnnpll 13  
                  +L+ LdL+ n l+
  KOO25104.1 2799 SLEFLDLRANKLT 2811
                  69*****999985 PP

  == domain 9  score: 1.6 bits;  conditional E-value: 0.53
       LRR_1    1 nLrhLdLsnnpllglp 16  
                  +L++LdL +n l +l+
  KOO25104.1 2822 SLKSLDLADNVLQRLE 2837
                  69********997765 PP

  == domain 10  score: 2.3 bits;  conditional E-value: 0.32
       LRR_1    2 LrhLdLsnnpllglppnsf 20  
                  L++L L +npl + pp ++
  KOO25104.1 2846 LEKLELQGNPL-QRPPLAI 2863
                  99*********.8887665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (3842 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1584  (0.0883485); expected 358.6 (0.02)
Passed bias filter:                      546  (0.0304535); expected 358.6 (0.02)
Passed Vit filter:                       105  (0.00585643); expected 17.9 (0.001)
Passed Fwd filter:                        35  (0.00195214); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              14  [number of targets reported over threshold]
# CPU time: 2.11u 0.37s 00:00:02.48 Elapsed: 00:00:00.56
# Mc/sec: 20720.02
//
Query:       KOO25105.1  [L=558]
Description: phospholipase b-like protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
   2.3e-114  382.9   0.0   2.7e-114  382.7   0.0    1.0  1  Phospholip_B  Phospholipase B


Domain annotation for each model (and alignments):
>> Phospholip_B  Phospholipase B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  382.7   0.0  1.5e-118  2.7e-114      28     528 ..      22     551 ..       2     554 .. 0.86

  Alignments for each domain:
  == domain 1  score: 382.7 bits;  conditional E-value: 1.5e-118
  Phospholip_B  28 atvyvaaeqksltlkeavleksg...rndlalatfk.dsvnetGWgqLevetqsaysdtvqayaaGllEGaltaeniykhlsNtieavckkseelck 120
                   ++vy + +++++  + +++ ++g   ++++a+ t++  + ++tG+++L + +    +  ++ayaaG++EG+ ta +i + ++N++e   +      +
    KOO25105.1  22 VSVYCKPSSTDV--APSCVIQEGiitKDSTATSTYNiSTNLTTGFATLDIASPLGTEPRLAAYAAGYAEGYQTAAEIVSFYNNVYEFGPSGP----S 112
                   444444444433..3444444445556667*****94555699*****************************************99755554....4 PP

  Phospholip_B 121 sklrefleenlkyvkkqvkekkktdpywrqvalllaqldGlvaGynkkvaksekk....keldlsdllllnlagdledlkkal.............. 199
                   +kl +f++en+k+v++qv++ ++t  yw+ v+ +l+ +dGlvaGy+ + +ks        +l+  dll++nl gdl dl+ a+              
    KOO25105.1 113 RKLLSFVTENDKWVRTQVEKFAPTSDYWMSVGTVLDRFDGLVAGYELAQKKSAAGaaplPPLSSRDLLWVNLEGDLYDLQGAIsepqfagrkgraar 209
                   569******************************************87766665441111467999******************99999999988888 PP

  Phospholip_B 200 ........ltkvkeeakcsaLvKllpgvedlllghttwssyssml.RiyKkYklreedravvpgtnvsfSsyPgllaSlDDfyitssr.....Lvvi 282
                            +++    +cs+L Kl+ +  +l++gh+tw +y++   Ri+K+ +l+ +++  +  ++vs+Ss+Pg+laS+DD+y++ +      L vi
    KOO25105.1 210 gfqplavgNSSALPAFHCSSLFKLAGDKRELYFGHATWDTYATAApRIFKHLTLPSRHNGSTLLRTVSMSSSPGFLASIDDYYLVREDasrttLGVI 306
                   8777764423344999*************************97644*********888888889*******************8776668899**** PP

  Phospholip_B 283 ettnevfnktLykkikpersvllwvRvmianrlaesgreWveiFsrensgTynnqwlvldykkfkesk....elpsglfwvveQlPgkveaeDvTev 375
                   et++++++++ y+ i+p+ svl+wvR+m+an+la s+++Wv+ F+ + sgTynnqw v+d+    +s+    el +++fwv e +Pg v+ eD++++
    KOO25105.1 307 ETSVNIEDQKAYQAITPQ-SVLCWVRSMVANQLALSAPSWVSAFATHASGTYNNQWQVIDVTLAMKSTsvgqELLEDTFWVAEEVPGLVHGEDQSAH 402
                   ******************.*****************************************7655443323339999********************* PP

  Phospholip_B 376 lnsegYwasyniPyfkeiynlsgyaaqvekyGdsysyettprakiferdqsnvtdleslkrlmrynnYkkd.plskgkpenaiaaRgDLnasggta. 470
                   ln++gYw+s+n+ ++++   + g++++         y+++ r kife  q +vt+ + ++r++  n+Y+   +    +p++ai +RgDL+a+ +   
    KOO25105.1 403 LNRYGYWPSFNVLFYPQTKAIAGATSE---------YTESVRYKIFEEHQAEVTSPAGMARMIAWNDYQASgETVAKSPAQAIMSRGDLHANDELVi 490
                   ***********************6665.........89******************************76414444578***********9666659 PP

  Phospholip_B 471 ....afGaiDlKvtsielv.eklqaravsGPttdtqppFdWskskllevvrhqGlpdvwnFef 528
                       a G+iD+K  +++++ + l     +GPt d+qp F W +   +e ++h G+p+ +++++
    KOO25105.1 491 idrsAGGGIDAKYSTVSAAaSGLISFGRAGPTNDDQPTFCWTA--AFESTKHEGHPHCFDYKW 551
                   9999*********9999884556677899*************9..77888***********98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (558 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       295  (0.0164538); expected 358.6 (0.02)
Passed bias filter:                      248  (0.0138323); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.53u 0.25s 00:00:00.78 Elapsed: 00:00:00.42
# Mc/sec: 3950.98
//
Query:       KOO25106.1  [L=573]
Description: glycosyltransferase family 77 protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.4e-36  126.5   0.0      2e-36  126.0   0.0    1.1  1  Nucleotid_trans  Nucleotide-diphospho-sugar transferase
  ------ inclusion threshold ------
       0.14   11.8   0.0       0.22   11.2   0.0    1.3  1  O-FucT           GDP-fucose protein O-fucosyltransferase


Domain annotation for each model (and alignments):
>> Nucleotid_trans  Nucleotide-diphospho-sugar transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  126.0   0.0   2.2e-40     2e-36       7     212 .]     129     384 ..     125     384 .. 0.91

  Alignments for each domain:
  == domain 1  score: 126.0 bits;  conditional E-value: 2.2e-40
  Nucleotid_trans   7 lvvAlDeealerckelgvpvlyltsk.gkdsakkdeefksktykkmswrkvrlllellklGynvllsDvDvvWlrnpfpll............. 86 
                      +v+A+D  a++++ ++g p ++     ++ + ++ ++++s ++kk+  +++  + +++ +Gy+v+ +D+DvvWlr+p+p++             
       KOO25106.1 129 VVGAVDVGAFDLILAQGSPAYKTPLAsEAYQMDGSNQHASSSWKKFAGMRTGEVMKIVAAGYTVMHTDCDVVWLRDPMPYVmcetagwnrdaps 222
                      9******************888888885555558899******************************************************999 PP

  Nucleotid_trans  87 ...ky.....edaDvlvssDsldgttadelknli......NsGfffvrateatkallkkwaeelasesglw.......Dqdvfnlllregaake 159
                         +y     ++aDv+vssD+ +++++ ++++ +      N+G+  +r++ ++++++k+w++ + s +  +       Dq+vfn+++r+++ ++
       KOO25106.1 223 vaeRYpceplREADVMVSSDNMSPDKDAQAHASYaaggtfNTGLLLIRSSLGGVRFVKEWHRLVVSPDRGSrfaaltsDQQVFNHMMRKPNEWP 316
                      9985577788***************999999999*****************************9999776789*****************9999 PP

  Nucleotid_trans 160 ...............sglkvrvLdtalfvngkgyfvqvrdeeevktkkkpvavhanycs...gkedKlkrl 212
                                     ++l++++L   lf+ng+gyfvq  + +   t   p avha+y     ++ +K++r+
       KOO25106.1 317 gisaphgawvmdawdKTLRLGALAMPLFMNGHGYFVQRAHVRLGFT---PLAVHATYSLdnhDNVAKRQRF 384
                      *************************************555555555...9*******99444444788876 PP

>> O-FucT  GDP-fucose protein O-fucosyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   2.5e-05      0.22      18      47 ..     446     477 ..     441     550 .. 0.80

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 2.5e-05
      O-FucT  18 ilrmvavarllnaTLVlPpw.dql.shwrdss 47 
                 + +++a+a +l++TL+lP+w ++   +w  s+
  KOO25106.1 446 LRDALALATILKRTLILPRWaCYCdRLWSGSD 477
                 5689****************844425565443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (573 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       288  (0.0160634); expected 358.6 (0.02)
Passed bias filter:                      261  (0.0145574); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.53u 0.23s 00:00:00.76 Elapsed: 00:00:00.42
# Mc/sec: 4137.54
//
Query:       KOO25107.1  [L=98]
Description: hypothetical protein Ctob_010309 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
     0.0015   16.8   1.1     0.0018   16.5   1.1    1.0  1  FPP         Filament-like plant protein, long coiled-coil
     0.0017   18.6   1.6     0.0041   17.4   0.7    1.8  2  CLZ         C-terminal leucine zipper domain of cyclic nucleo
     0.0093   14.3   1.0       0.01   14.2   1.0    1.0  1  Cast        RIM-binding protein of the cytomatrix active zone
     0.0094   16.1   2.7      0.037   14.2   1.6    2.0  2  XhlA        Haemolysin XhlA
  ------ inclusion threshold ------
      0.012   15.4   0.4      0.023   14.4   0.4    1.5  2  Use1        Membrane fusion protein Use1
      0.013   15.6   0.1      0.014   15.5   0.1    1.1  1  MCU         Mitochondrial calcium uniporter
      0.025   14.0   1.1      0.027   13.8   1.1    1.1  1  GAS         Growth-arrest specific micro-tubule binding
      0.027   13.3   0.1       0.03   13.1   0.1    1.0  1  DUF2207     Predicted membrane protein (DUF2207)
      0.035   14.1   0.1       0.11   12.6   0.0    1.8  2  SNARE       SNARE domain
      0.062   13.6   0.7      0.072   13.4   0.7    1.1  1  THOC7       Tho complex subunit 7
      0.062   13.8   0.2      0.094   13.2   0.2    1.3  1  PRRSV_2b    Porcine reproductive and respiratory syndrome vir
      0.077   13.2   0.0       0.23   11.6   0.0    1.6  2  COG5        Golgi transport complex subunit 5
       0.09   12.6   0.6        0.1   12.4   0.6    1.1  1  DUF724      Protein of unknown function (DUF724)
       0.14   11.9   0.9        1.4    8.8   0.1    2.5  3  PheRS_DBD1  PheRS DNA binding domain 1
       0.56   10.9   2.5       0.78   10.4   0.9    1.8  2  SlyX        SlyX


Domain annotation for each model (and alignments):
>> FPP  Filament-like plant protein, long coiled-coil
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   1.1   1.5e-06    0.0018     725     785 ..       8      68 ..       2      79 .. 0.92

  Alignments for each domain:
  == domain 1  score: 16.5 bits;  conditional E-value: 1.5e-06
         FPP 725 lqesEqllaelkseLeslkeskslaetqlkcmkesyesletrateleaelnelkqkieaLe 785
                 lqe+   l+ l+  ++++k + +++et+lk+++++ esl+    ++++++++l++k+ a+ 
  KOO25107.1   8 LQEQDDALDTLEGGIKRIKALGKVMETELKEQAVILESLDEDIDKADSNMQSLQKKMGAMI 68 
                 899*****************************************************98875 PP

>> CLZ  C-terminal leucine zipper domain of cyclic nucleotide-gated channels
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.5   0.1      0.33   3.9e+02      37      63 ..      12      38 ..       3      45 .. 0.56
   2 !   17.4   0.7   3.4e-06    0.0041      18      61 ..      35      78 ..      28      85 .. 0.85

  Alignments for each domain:
  == domain 1  score: 1.5 bits;  conditional E-value: 0.33
         CLZ 37 essLeaLqtrlarLlaeyessqrkLkq 63
                + +L++L+  ++r+ a  + ++++Lk+
  KOO25107.1 12 DDALDTLEGGIKRIKALGKVMETELKE 38
                345566666566655555555555555 PP

  == domain 2  score: 17.4 bits;  conditional E-value: 3.4e-06
         CLZ 18 eaakagaeqkeleekverLessLeaLqtrlarLlaeyessqrkL 61
                e +++    ++l+e +++ +s++++Lq+++  ++++ +ss+r L
  KOO25107.1 35 ELKEQAVILESLDEDIDKADSNMQSLQKKMGAMIEDAKSSDRAL 78
                45555566799*****************************9987 PP

>> Cast  RIM-binding protein of the cytomatrix active zone
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.2   1.0   8.3e-06      0.01     367     438 ..       7      78 ..       1      85 [. 0.92

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 8.3e-06
        Cast 367 qlqdlteekstlageirdlkdmldvkeRkvnvlqkkienLqeqlrdkdkqlaelkervkslqtDssntDtAL 438
                  lq+ ++   tl+g i+ +k   +v e  ++     +e+L e +   d  +++l++++ ++ +D+  +D AL
  KOO25107.1   7 LLQEQDDALDTLEGGIKRIKALGKVMETELKEQAVILESLDEDIDKADSNMQSLQKKMGAMIEDAKSSDRAL 78 
                 5888889999**********************999************************************9 PP

>> XhlA  Haemolysin XhlA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.6   0.2     0.032        38       6      36 ..       8      38 ..       7      44 .. 0.84
   2 !   14.2   1.6   3.1e-05     0.037       9      59 ..      32      82 ..      30      95 .. 0.86

  Alignments for each domain:
  == domain 1  score: 4.6 bits;  conditional E-value: 0.032
        XhlA  6 lerietkldnleervdkleekaaeaeekikn 36
                l++ +  ld+le  +++++     +e+++k+
  KOO25107.1  8 LQEQDDALDTLEGGIKRIKALGKVMETELKE 38
                5677889999999999999999999999986 PP

  == domain 2  score: 14.2 bits;  conditional E-value: 3.1e-05
        XhlA  9 ietkldnleervdkleekaaeaeekiknleedlkklesnqkWlirtiiGal 59
                +et+l++    ++ l+e+ ++a+++ ++l++++  + +  k   r++ G++
  KOO25107.1 32 METELKEQAVILESLDEDIDKADSNMQSLQKKMGAMIEDAKSSDRALWGII 82
                89999*9999999***********************999998877777744 PP

>> Use1  Membrane fusion protein Use1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.2   0.0      0.56   6.7e+02      50      74 ..      14      38 ..       3      47 .. 0.73
   2 ?   14.4   0.4   1.9e-05     0.023     191     243 ..      44      97 ..      22      98 .] 0.76

  Alignments for each domain:
  == domain 1  score: -0.2 bits;  conditional E-value: 0.56
        Use1 50 skevlkeYsekveaLkllleaekls 74
                + ++l+   ++++aL +++e+e ++
  KOO25107.1 14 ALDTLEGGIKRIKALGKVMETELKE 38
                6677777788999999998888877 PP

  == domain 2  score: 14.4 bits;  conditional E-value: 1.9e-05
        Use1 191 etlsksekaadqnlaslkkeserleeh.skskvkcllwlllfvvlvvFismvlf 243
                 e l++ + +ad+n++sl+k+   + e  ++s  + + ++++  +l+ F++m +f
  KOO25107.1  44 ESLDEDIDKADSNMQSLQKKMGAMIEDaKSSDRALWGIIAFLTLLLGFLTMMVF 97 
                 345666789999******99998888648888899999999999999****998 PP

>> MCU  Mitochondrial calcium uniporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.5   0.1   1.2e-05     0.014      39     111 ..      25      97 ..       2      98 .] 0.70

  Alignments for each domain:
  == domain 1  score: 15.5 bits;  conditional E-value: 1.2e-05
                 XXXXX-SS.SSSSTSSSSSHHHHHHHHHHHHH-SHHHHHHHHTCCCGGGCHHHHGGGHHHHHHHHTHHHHHHHT CS
         MCU  39 vkalesal.nveeeqlkkereleekleelreelepleekkeeidekAerrtrrllwagLallavqlgilarLTw 111
                 +kal +++ +  +eq+   ++l+e++++  +++++l++k   + e A++ + r lw+ +a+l++ lg+l  + +
  KOO25107.1  25 IKALGKVMeTELKEQAVILESLDEDIDKADSNMQSLQKKMGAMIEDAKS-SDRALWGIIAFLTLLLGFLTMMVF 97 
                 334444443222355556678899999999*******977777777765.56689999******9999988776 PP

>> GAS  Growth-arrest specific micro-tubule binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   1.1   2.2e-05     0.027      84     137 ..      19      72 ..       1      76 [. 0.86

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 2.2e-05
         GAS  84 kqslknlkarlkelekelkdlkwehevleqrfekvekerdelykkfeaaiqevq 137
                    +k++ka  k++e elk+  +  e+l + ++k+ +  + l+kk  a+i++++
  KOO25107.1  19 EGGIKRIKALGKVMETELKEQAVILESLDEDIDKADSNMQSLQKKMGAMIEDAK 72 
                 5567999*******************************************9987 PP

>> DUF2207  Predicted membrane protein (DUF2207)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.1   2.5e-05      0.03     315     400 ..       7      96 ..       2      98 .] 0.49

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 2.5e-05
     DUF2207 315 ldpyEkalldlLfdkseegks...............lkeikkyakkskkkakkfkkalkkwksavkkkergyfdkkgkkklkklsalglgliilglili 398
                 l +++ ++ld L +++++ k                l+++ +       + +k  ++++++++++ +     +++++++ ++ +++++++ ++lg++ +
  KOO25107.1   7 LLQEQDDALDTLEGGIKRIKAlgkvmetelkeqaviLESLDE-------DIDKADSNMQSLQKKMGA----MIEDAKSSDRALWGIIAFLTLLLGFLTM 94 
                 556666677777766655533344443221113333333333.......444444444444444444....5666666666666666666666666665 PP

     DUF2207 399 ll 400
                 ++
  KOO25107.1  95 MV 96 
                 54 PP

>> SNARE  SNARE domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.0       3.2   3.9e+03      11      25 ..      12      26 ..      12      27 .. 0.78
   2 ?   12.6   0.0   8.9e-05      0.11       2      51 ..      42      91 ..      41      93 .. 0.85

  Alignments for each domain:
  == domain 1  score: -2.0 bits;  conditional E-value: 3.2
                HHHHHHHHHHHHHHH CS
       SNARE 11 enaqsnveraqkeLk 25
                ++a + +e++ k++k
  KOO25107.1 12 DDALDTLEGGIKRIK 26
                678888999988875 PP

  == domain 2  score: 12.6 bits;  conditional E-value: 8.9e-05
                HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTXXXXXXXXXXXXXXXXXX CS
       SNARE  2 mvDrIdtnVenaqsnveraqkeLkkavkyqksnRklkciillilviillv 51
                ++ ++d +++ a+sn+++ qk++  + + +ks+ + ++ i+ +l ++l +
  KOO25107.1 42 ILESLDEDIDKADSNMQSLQKKMGAMIEDAKSSDRALWGIIAFLTLLLGF 91
                7899************************9999988777777777666655 PP

>> THOC7  Tho complex subunit 7
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.7     6e-05     0.072      46      98 ..      12      64 ..       2      72 .. 0.89

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 6e-05
       THOC7 46 lldfaafelsierlqllakanerereryeaekeeieseieavreeieelkaqL 98
                   + ++e  i+r+++l k +e e ++ +   e +++ i ++ +++++l++++
  KOO25107.1 12 DDALDTLEGGIKRIKALGKVMETELKEQAVILESLDEDIDKADSNMQSLQKKM 64
                5567889999***************************************9986 PP

>> PRRSV_2b  Porcine reproductive and respiratory syndrome virus 2b
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.2   7.9e-05     0.094       3      40 ..      56      92 ..      54      97 .. 0.88

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 7.9e-05
    PRRSV_2b  3 smqslfdkigqlfvdafteflvsivdiiiflaillgft 40
                 mqsl  k+g ++ da +    ++  ii fl++llgf 
  KOO25107.1 56 NMQSLQKKMGAMIEDAKSSD-RALWGIIAFLTLLLGFL 92
                6***************8764.68999**********95 PP

>> COG5  Golgi transport complex subunit 5
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.0   0.0      0.76   9.1e+02      73      92 ..       7      26 ..       2      33 .. 0.69
   2 ?   11.6   0.0    0.0002      0.23      62     126 ..      30      95 ..      22      98 .] 0.88

  Alignments for each domain:
  == domain 1  score: -0.0 bits;  conditional E-value: 0.76
                XXXXXXXXXXXXXXXXXXXX CS
        COG5 73 vlselksslesLsasyerlk 92
                +l+e +  l+ L+  ++r+k
  KOO25107.1  7 LLQEQDDALDTLEGGIKRIK 26
                56666677777777777776 PP

  == domain 2  score: 11.6 bits;  conditional E-value: 0.0002
                 XXXXXXXXXXX.XXXXXXXXXXXXXXXXXXXX-TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
        COG5  62 ehlskskslss.vlselksslesLsasyerlkskvlepyeeaeklqsalkrlhqtldLlrralrfl 126
                 + +++++++++ +l++l++ +++  + ++ l++k    +e+a+++ +al  +   l+Ll + l ++
  KOO25107.1  30 KVMETELKEQAvILESLDEDIDKADSNMQSLQKKMGAMIEDAKSSDRALWGIIAFLTLLLGFLTMM 95 
                 567788888999*********************************************999887776 PP

>> DUF724  Protein of unknown function (DUF724)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.6   8.5e-05       0.1     102     160 ..      20      78 ..       7      83 .. 0.84

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 8.5e-05
      DUF724 102 deqtklleerkklekkieeeesekrkleeeidelekkilelerqlallkekkeaadkei 160
                    ++++   k +e +++e++   ++l+e+id+ +++++ l+++  ++ e+ +++d+ +
  KOO25107.1  20 GGIKRIKALGKVMETELKEQAVILESLDEDIDKADSNMQSLQKKMGAMIEDAKSSDRAL 78 
                 566777778899999*****************************998887777777665 PP

>> PheRS_DBD1  PheRS DNA binding domain 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.8   0.1    0.0011       1.4      35      56 ..      18      39 ..      16      42 .. 0.87
   2 ?   -1.4   0.1       1.7     2e+03       9      21 ..      42      55 ..      37      61 .. 0.63
   3 ?    0.9   0.0      0.32   3.9e+02      40      57 ..      58      76 ..      56      78 .. 0.83

  Alignments for each domain:
  == domain 1  score: 8.8 bits;  conditional E-value: 0.0011
  PheRS_DBD1 35 vVGavKSLqalgelIkaeqrss 56
                + G +K ++alg++ ++e +++
  KOO25107.1 18 LEGGIKRIKALGKVMETELKEQ 39
                679********99****98765 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 1.7
  PheRS_DBD1  9 lLqrLek.kgevds 21
                +L+ L++  ++ ds
  KOO25107.1 42 ILESLDEdIDKADS 55
                77777764344444 PP

  == domain 3  score: 0.9 bits;  conditional E-value: 0.32
  PheRS_DBD1 40 KSLqal.gelIkaeqrssk 57
                 SLq + g +I+ +++s +
  KOO25107.1 58 QSLQKKmGAMIEDAKSSDR 76
                69***99*9**98888765 PP

>> SlyX  SlyX
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.3   0.2      0.93   1.1e+03      14      24 ..      10      20 ..       7      38 .. 0.53
   2 ?   10.4   0.9   0.00065      0.78       8      50 ..      32      74 ..      22      79 .. 0.88

  Alignments for each domain:
  == domain 1  score: 0.3 bits;  conditional E-value: 0.93
                HHHHHHHHHHH CS
        SlyX 14 fqedtieeLnd 24
                 q+d++++L  
  KOO25107.1 10 EQDDALDTLEG 20
                45555555543 PP

  == domain 2  score: 10.4 bits;  conditional E-value: 0.00065
                HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-XXX CS
        SlyX  8 LEiklafqedtieeLndvvaeqqqqidrlqrqlrllaerlkel 50
                +E++l  q   +e+L++ + + +  ++ lq+++ ++ e  k+ 
  KOO25107.1 32 METELKEQAVILESLDEDIDKADSNMQSLQKKMGAMIEDAKSS 74
                69999999999**********************9999988765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (98 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1523  (0.0849462); expected 358.6 (0.02)
Passed bias filter:                     1015  (0.0566122); expected 358.6 (0.02)
Passed Vit filter:                       135  (0.0075297); expected 17.9 (0.001)
Passed Fwd filter:                        15  (0.000836633); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              15  [number of targets reported over threshold]
# CPU time: 0.44u 0.27s 00:00:00.71 Elapsed: 00:00:00.42
# Mc/sec: 708.73
//
Query:       KOO25108.1  [L=301]
Description: histone-lysine n-methyltransferase mll-like protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.7e-11   42.0  18.0    1.1e-10   41.4  18.0    1.3  1  zf-CXXC   CXXC zinc finger domain


Domain annotation for each model (and alignments):
>> zf-CXXC  CXXC zinc finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.4  18.0     6e-15   1.1e-10       5      48 .]     167     209 ..     164     209 .. 0.96

  Alignments for each domain:
  == domain 1  score: 41.4 bits;  conditional E-value: 6e-15
                 X-B--SSSTTTTS--.BS-SCCCCTSCCCTS-S-S---BGGG-- CS
     zf-CXXC   5 krkrCgeCeaCqrtedCgkCsaCrdkkkfggpgkkkqkCrkRrC 48 
                  r+rCg C++C r++ C +C +C+dk+kfgg+g++kq+C+kR C
  KOO25108.1 167 SRQRCGACAGCMRKD-CVECPNCLDKPKFGGQGRRKQACEKRIC 209
                 5899**********9.**************************99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (301 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       575  (0.0320709); expected 358.6 (0.02)
Passed bias filter:                      289  (0.0161191); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.25s 00:00:00.68 Elapsed: 00:00:00.41
# Mc/sec: 2219.19
//
Query:       KOO25109.1  [L=468]
Description: hypothetical protein Ctob_002835 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.7e-10   40.7   0.0    3.7e-08   33.0   0.0    2.2  2  Glyco_trans_1_3  Glycosyl transferase family 1
     0.0021   18.0   0.0     0.0038   17.2   0.0    1.4  1  Glyco_tran_28_C  Glycosyltransferase family 28 C-terminal dom
  ------ inclusion threshold ------
      0.024   13.5   0.0      0.039   12.8   0.0    1.2  1  UDPGT            UDP-glucoronosyl and UDP-glucosyl transferas


Domain annotation for each model (and alignments):
>> Glyco_trans_1_3  Glycosyl transferase family 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.6   0.0    0.0014       8.2       2      44 ..      13      58 ..      12      81 .. 0.80
   2 !   33.0   0.0   6.3e-12   3.7e-08     177     292 ..     198     314 ..     175     335 .. 0.90

  Alignments for each domain:
  == domain 1  score: 5.6 bits;  conditional E-value: 0.0014
  Glyco_trans_1_3  2 rilYgvsGeGaGhasRsrvvlehL.arghevkvvvsgr..aldvLe 44
                     r + +  G G+Gh + +   +e L arg ++  vv+++  a+++L+
       KOO25109.1 13 RFVVAFCGSGTGHLTQAMKAVEILeARGFTLAGVVTDTdaAEKMLD 58
                     5677889************************977766421555554 PP

  == domain 2  score: 33.0 bits;  conditional E-value: 6.3e-12
  Glyco_trans_1_3 177 lvPpilRkeilaakptegehlLvYlt.segnealpevLkklg.vefvvYglrrdteeekegnltykafseegFleDLataraviagagftLmte 268
                      ++Ppi+      ++p++   +L Y+   +  +al ++L+k + +++  + +  ++ +++++ l+ ++   + F e  a++  vi +ag   + e
       KOO25109.1 198 ILPPIIHLP-APLQPRTPRLILCYFLvQTNAKALDAILAKKPiANCEFHCFTSKPLDKTHSQLRSHQKQRALFQELFAKCTGVIVSAGNETIWE 290
                      567777654.46889999999*99984556678********9899************************************************* PP

  Glyco_trans_1_3 269 alyLkkPlLavPvarqFeqvlnal 292
                      a+  + P+L++P +   eq lna 
       KOO25109.1 291 AVCRGVPVLTIPTEAHGEQLLNAA 314
                      **********************97 PP

>> Glyco_tran_28_C  Glycosyltransferase family 28 C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   0.0   6.3e-07    0.0038      76     130 ..     279     331 ..     262     361 .. 0.82

  Alignments for each domain:
  == domain 1  score: 17.2 bits;  conditional E-value: 6.3e-07
                      EEECS-CHHHHHHHHTT--EEEE--TT....S-HHHHHHHHHHHHHHSSEEEE-S CS
  Glyco_tran_28_C  76 vIsRAGagtiaEllalgkplIlvplpeaaenhqdnNakelekagaalvleqkelt 130
                      vI  AG  ti+E++  g+p +++p +    ++q  Na+  ++++ +lv    +l 
       KOO25109.1 279 VIVSAGNETIWEAVCRGVPVLTIPTEA--HGEQLLNAAVHARNFPTLVRARPVLR 331
                      6777**********************9..67*****9987777766666555555 PP

>> UDPGT  UDP-glucoronosyl and UDP-glucosyl transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0   6.5e-06     0.039     344     377 ..     279     314 ..     267     334 .. 0.87

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 6.5e-06
       UDPGT 344 FvtHaGangvyEaisnGvPmvglPl..FgdqrdNik 377
                  +  aG ++++Ea++ GvP+ ++P    g+q  N++
  KOO25109.1 279 VIVSAGNETIWEAVCRGVPVLTIPTeaHGEQLLNAA 314
                 57889*******************644899999987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (468 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       577  (0.0321825); expected 358.6 (0.02)
Passed bias filter:                      420  (0.0234257); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.50u 0.28s 00:00:00.78 Elapsed: 00:00:00.41
# Mc/sec: 3400.69
//
Query:       KOO25110.1  [L=517]
Description: centrosomal protein of 44 kda [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    9.6e-38  129.2   0.0    1.6e-37  128.5   0.0    1.3  1  CEP44     Centrosomal spindle body, CEP44


Domain annotation for each model (and alignments):
>> CEP44  Centrosomal spindle body, CEP44
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  128.5   0.0   8.7e-42   1.6e-37       1     123 [.       6     128 ..       6     132 .. 0.98

  Alignments for each domain:
  == domain 1  score: 128.5 bits;  conditional E-value: 8.7e-42
       CEP44   1 DlkgnlekLkreLrklkypeevdaeglakGdpsaflpilhyallsyskkvaellaekgleLygkndlRFveavykllrdefkykpaLtkkqFlskgFae 99 
                 Dl  n+ kL+ +Lr++ky   vda +l  G+p+ +lp+lhyall+ s+ va  la++g+eL +k+d+RFve vy+l+r+ef+y+ +Lt kq+l  gFae
  KOO25110.1   6 DLAANIVKLRDALRRAKYDGPVDAPALGLGEPAGYLPLLHYALLHSSRTVAAWLATSGYELSAKTDMRFVEVVYRLVREEFGYRHKLTCKQMLGAGFAE 104
                 8999*********************************************************************************************** PP

       CEP44 100 rKlilvldilklvkkkhkeltree 123
                 +K+++v+d+l+l++ kh +l re+
  KOO25110.1 105 HKILFVVDVLELCRGKHAQLGRER 128
                 *******************99886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (517 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       891  (0.049696); expected 358.6 (0.02)
Passed bias filter:                      482  (0.0268838); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.56u 0.23s 00:00:00.79 Elapsed: 00:00:00.40
# Mc/sec: 3862.61
//
Query:       KOO25111.1  [L=235]
Description: inositol polyphosphate multikinase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.036   13.9   0.0      0.054   13.4   0.0    1.3  1  IPK       Inositol polyphosphate kinase


Domain annotation for each model (and alignments):
>> IPK  Inositol polyphosphate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.0     3e-06     0.054       1      20 [.     109     128 ..     109     142 .. 0.95

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 3e-06
                 EEEEE-TTTT-SSEEEEEEE CS
         IPK   1 ylvLedltagfkkPcvlDvK 20 
                 ++vLedlt+g+++P v+D+K
  KOO25111.1 109 FVVLEDLTHGMERPLVVDIK 128
                 689****************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (235 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       196  (0.010932); expected 358.6 (0.02)
Passed bias filter:                      174  (0.00970495); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.24s 00:00:00.61 Elapsed: 00:00:00.37
# Mc/sec: 1907.67
//
Query:       KOO25112.1  [L=453]
Description: mate efflux family protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.6e-17   62.9  36.0    7.7e-11   41.9  14.2    2.5  2  MatE      MatE


Domain annotation for each model (and alignments):
>> MatE  MatE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.9  14.2   4.3e-15   7.7e-11      12     161 .]       5     164 ..       2     164 .. 0.81
   2 !   26.4  13.8   2.6e-10   4.6e-06      20     151 ..     270     403 ..     251     411 .. 0.90

  Alignments for each domain:
  == domain 1  score: 41.9 bits;  conditional E-value: 4.3e-15
        MatE  12 lslidtllvgrl.gskalAavsialsilsllfvfllglstalttlvgqalGaknf....krakealrqglilllllsliiallvllfseqilslftqde 105
                  sl+dt ++gr+ ++ +lA+v++a+s+++l+   + +l++a+t+ v+ a     +     ++++++  +l ++++++ +ia ++++   ++l+ ++  +
  KOO25112.1   5 ASLVDTAMIGRFcSAADLAGVGVAISVFNLIARTFNFLNSATTSAVAAASMDAAPgtftAEMSRQAAAALAVAIVIGTVIACALVAAGGHLLRGLGLAA 103
                 689*******************************************99854333311113455666666666666666666666666666666666555 PP

        MatE 106 e.....vlelakrylrililgipalalqlvlsgilrgagktkvplyislislllniplnyl 161
                        l  a+ yl   +l +pa + +++l+g++rga +t +pl ++ +++ ln++l+++
  KOO25112.1 104 SgpsaaTLVSARSYLVGRALAAPAVLALMALQGAFRGARDTVTPLGALTLATALNLVLDPV 164
                 555556****************************************************985 PP

  == domain 2  score: 26.4 bits;  conditional E-value: 2.6e-10
        MatE  20 vgrlgskalAavsialsilsllfvfllglstalttlvgqalGa..knfkrakealrqglilllllsliiallvllfseqilslftqdeevlelakrylr 116
                 ++ lg+ a Aa++i l+i     +++ ++++a ++l + al +  + ++ra+ +lr++++ +l l++++a +++l  + ++  f++d +v ++a+   +
  KOO25112.1 270 AATLGAAAGAAHQILLQICLASSLLADAVAIAGQSLLASALASvkGGRRRARAILRTMTVSGLMLGVATASALVLTGPSLANAFSTDLAVRSAAASTWP 368
                 456799999********************************96336699************************************************** PP

        MatE 117 ililgipalalqlvlsgilrgagktkvplyislis 151
                 ++++++p++ l ++ +g+l ga++   ++ i+l s
  KOO25112.1 369 LMAWSQPLYTLAFAVDGMLFGASDWAGAVGIMLGS 403
                 *********************99987777766655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (453 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       721  (0.0402142); expected 358.6 (0.02)
Passed bias filter:                      226  (0.0126053); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.28s 00:00:00.76 Elapsed: 00:00:00.42
# Mc/sec: 3242.95
//
Query:       KOO25113.1  [L=565]
Description: folc bifunctional protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    3.9e-10   40.0   0.0    5.9e-10   39.5   0.0    1.2  1  Mur_ligase_M  Mur ligase middle domain


Domain annotation for each model (and alignments):
>> Mur_ligase_M  Mur ligase middle domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.5   0.0   3.3e-14   5.9e-10       1     103 [.     344     485 ..     344     507 .. 0.91

  Alignments for each domain:
  == domain 1  score: 39.5 bits;  conditional E-value: 3.3e-14
                   EESSS-HHHHHHHHHHHHHCT.EEEEETTC......................................SS-THHHHHHHHHHHHHTT-SEEEEE--H CS
  Mur_ligase_M   1 vTGtnGKTTtteliaaileka.gkvigtvg......................................ttnneiglpktlaemekkeaeyavlEvss 58 
                   v+GtnGK +t  +i+a le+a + v+                                          t+ +++++ ++la  +   a+y  lEv++
    KOO25113.1 344 VAGTNGKGSTIAFIRAGLEAAgCSVHVYTSphlvrfherirlagrligeptlatllaevlaaigdesiTFFEATTCAALLAFSRV-PADYTLLEVGM 439
                   89*******************7444444446799******************************************999988888.*********** PP

                   CHHHC.TTTCCHCBESEEEE---TSTTHHHH.SSHHHHHHHHHHHHH CS
  Mur_ligase_M  59 hglge.krlegllkpdvavitnispdHldfh.gtlenyaeaKaelfe 103
                    g  +   ++g l p + vit +s dH +f+ +t+e++a++Ka +++
    KOO25113.1 440 GGRLDaTNVAG-LAPVACVITAVSLDHQEFLgSTVEAIAAEKAGILR 485
                   *9988899999.9******************7799********9985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (565 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       263  (0.014669); expected 358.6 (0.02)
Passed bias filter:                      224  (0.0124937); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.51u 0.25s 00:00:00.76 Elapsed: 00:00:00.43
# Mc/sec: 3986.06
//
Query:       KOO25114.1  [L=94]
Description: hypothetical protein Ctob_002832 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    0.00031   20.8   0.0    0.00036   20.6   0.0    1.2  1  Nucleotid_trans  Nucleotide-diphospho-sugar transferase


Domain annotation for each model (and alignments):
>> Nucleotid_trans  Nucleotide-diphospho-sugar transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.6   0.0     2e-08   0.00036      60     121 ..       2      59 ..       1      92 [. 0.74

  Alignments for each domain:
  == domain 1  score: 20.6 bits;  conditional E-value: 2e-08
  Nucleotid_trans  60 lellklGynvllsDvDvvWlrnpfpllky..edaDvlvssDsldgttadelknliNsGfffvra 121
                      ++l+  Gyn ll+D+Dv+ + +p p++k    ++ + v  Ds  g       + +N+G++++++
       KOO25114.1   2 QRLVLSGYNTLLLDTDVILFHDPYPFFKGllANYSAFVLGDSSAGF------AAVNGGIYYLQN 59 
                      788999*********************4355555555555555555......357899998876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (94 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       255  (0.0142228); expected 358.6 (0.02)
Passed bias filter:                      238  (0.0132746); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.25s 00:00:00.61 Elapsed: 00:00:00.39
# Mc/sec: 716.07
//
Query:       KOO25115.1  [L=777]
Description: hypothetical protein Ctob_002828 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      1e-14   54.2  15.3    0.00015   21.7   0.8    3.4  3  PAN_1     PAN domain
    1.6e-09   37.5  26.5    2.7e-05   24.0   0.6    3.9  4  PAN_4     PAN domain
  ------ inclusion threshold ------
       0.15   12.4  14.9        1.5    9.2   2.6    3.5  3  MANEC     MANEC domain


Domain annotation for each model (and alignments):
>> PAN_1  PAN domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.6   1.7   1.1e-07   0.00064      21      61 ..     145     185 ..     138     202 .. 0.82
   2 !   21.0   0.4   4.1e-08   0.00024      20      61 ..     275     313 ..     256     346 .. 0.82
   3 !   21.7   0.8   2.5e-08   0.00015      22      60 ..     368     404 ..     365     422 .. 0.87

  Alignments for each domain:
  == domain 1  score: 19.6 bits;  conditional E-value: 1.1e-07
                 CSSHHHHHHHHHHSTTS--SEEEEETT..TTEEEEEESSSSSC CS
       PAN_1  21 vdsaeeCaerCseekkfrCrsftfnns..tkeCylksedktsl 61 
                 + s++eC++ C+++++  C+   f+++  +++C+l  + ++ +
  KOO25115.1 145 THSLRECQTTCRHHPR--CEMLVFYPQekQGTCILCADLTHYQ 185
                 5699************..*********99*****988777664 PP

  == domain 2  score: 21.0 bits;  conditional E-value: 4.1e-08
                 ECSSHHHHHHHHHHSTTS--SEEEEETTTTEEEEEESSSSSC CS
       PAN_1  20 tvdsaeeCaerCseekkfrCrsftfnnstkeCylksedktsl 61 
                   +s eeC+  C  + +  C+ f f++ +++C+l ++ + +l
  KOO25115.1 275 A-ASKEECCNFCGTKGG--CQDFVFEPGSGTCVLLPHVSSDL 313
                 3.499************..***************99988765 PP

  == domain 3  score: 21.7 bits;  conditional E-value: 2.5e-08
                 SSHHHHHHHHHHSTTS--SEEEEETTTTEEEEEESSSSS CS
       PAN_1  22 dsaeeCaerCseekkfrCrsftfnnstkeCylksedkts 60 
                 d+  +C+ +C  +++  C+ ftf++ +k+C+++++ +++
  KOO25115.1 368 DDKVDCCDACDRTPS--CTKFTFEPYSKRCVMYEGYAET 404
                 67789**********..****************998876 PP

>> PAN_4  PAN domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -5.0   2.6         3   1.8e+04      30      48 ..      84     102 ..      82     103 .. 0.78
   2 !   14.0   2.0   6.1e-06     0.037       7      50 ..     137     177 ..     135     178 .. 0.88
   3 !   17.7   0.8     4e-07    0.0024      14      48 ..     274     303 ..     265     306 .. 0.84
   4 !   24.0   0.6   4.6e-09   2.7e-05       5      38 ..     358     390 ..     350     397 .. 0.82

  Alignments for each domain:
  == domain 1  score: -5.0 bits;  conditional E-value: 3
       PAN_4  30 nCnawvyvkpavkgayarC 48 
                 +C +w   ++++  ++a C
  KOO25115.1  84 ECTVWDLPNNYCHTSPAAC 102
                 6889988888888888888 PP

  == domain 2  score: 14.0 bits;  conditional E-value: 6.1e-06
       PAN_4   7 dlangevladspeaCcaaCaadsnCnawvyvkpavkgayarCwL 50 
                 +l +g+  + s ++C+  C++ ++C   v+     ++++++C L
  KOO25115.1 137 TLGTGVCATHSLRECQTTCRHHPRCEMLVFYP---QEKQGTCIL 177
                 56666668899********************9...899***987 PP

  == domain 3  score: 17.7 bits;  conditional E-value: 4e-07
       PAN_4  14 ladspeaCcaaCaadsnCnawvyvkpavkgayarC 48 
                 +a+s e+Cc+ C    +C+ +v+        +++C
  KOO25115.1 274 IAASKEECCNFCGTKGGCQDFVFEP-----GSGTC 303
                 6889*******************98.....34555 PP

  == domain 4  score: 24.0 bits;  conditional E-value: 4.6e-09
       PAN_4   5 GndlangevladspeaCcaaCaadsnCnawvyvk 38 
                 G++l+ g  + d+  +Cc+aC+++++C  +++  
  KOO25115.1 358 GQPLPGG-TPIDDKVDCCDACDRTPSCTKFTFEP 390
                 5556664.6999********************76 PP

>> MANEC  MANEC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.2   2.6   0.00025       1.5      33      68 ..     145     177 ..     138     187 .. 0.85
   2 ?    6.0   0.8    0.0024        14      15      58 ..     258     300 ..     248     312 .. 0.79
   3 ?    4.0   0.2    0.0099        59      33      58 ..     367     392 ..     357     406 .. 0.83

  Alignments for each domain:
  == domain 1  score: 9.2 bits;  conditional E-value: 0.00025
       MANEC  33 veseedCveaCcsekkCnlavveekkeeekkksCyL 68 
                 ++s ++C ++C ++++C++ v+  ++   k+ +C L
  KOO25115.1 145 THSLRECQTTCRHHPRCEMLVFYPQE---KQGTCIL 177
                 57889*****************9999...6777766 PP

  == domain 2  score: 6.0 bits;  conditional E-value: 0.0024
       MANEC  15 irtedsveegakflesaeveseedCveaCcsekkCnlavveekk 58 
                 +rte sv++   + ++  ++s+e+C + C ++  C+ +v+e  +
  KOO25115.1 258 LRTELSVDQSEGYSDRI-AASKEECCNFCGTKGGCQDFVFEPGS 300
                 67888888877776655.567889**************999766 PP

  == domain 3  score: 4.0 bits;  conditional E-value: 0.0099
       MANEC  33 veseedCveaCcsekkCnlavveekk 58 
                 ++++ dC  aC ++++C+ + +e  +
  KOO25115.1 367 IDDKVDCCDACDRTPSCTKFTFEPYS 392
                 567889***********998888655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (777 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       601  (0.0335211); expected 358.6 (0.02)
Passed bias filter:                      319  (0.0177924); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.60u 0.23s 00:00:00.83 Elapsed: 00:00:00.41
# Mc/sec: 5705.16
//
Query:       KOO25116.1  [L=649]
Description: hypothetical protein Ctob_002829 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
   1.6e-141  459.9   0.0    2.2e-15   56.1   0.0    9.2 12  DUF4116      Domain of unknown function (DUF4116)
    1.4e-08   34.8   0.0        7.9    6.6   0.0    7.3 11  Rsbr_N       Rsbr N terminal
    0.00031   20.5   0.1         33    4.4   0.0    6.3  8  PRA-CH       Phosphoribosyl-AMP cyclohydrolase
     0.0012   19.3   1.5         16    6.2   0.0    5.4  3  TNT          Tuberculosis necrotizing toxin
  ------ inclusion threshold ------
      0.028   14.3   0.1         14    5.6   0.0    4.0  3  gpW          gpW
      0.034   14.4   1.0        8.1    6.8   0.0    4.0  4  AdoMet_dc    S-adenosylmethionine decarboxylase
       0.11   12.5   8.6         23    4.9   0.2    4.8  6  DUF2150      Uncharacterized protein conserved in archaea (DU


Domain annotation for each model (and alignments):
>> DUF4116  Domain of unknown function (DUF4116)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.0   0.0    0.0039        10      26      41 ..       5      20 ..       3      23 .. 0.60
   2 !   51.4   0.0   2.5e-17   6.3e-14       1      49 []      35      83 ..      35      83 .. 0.98
   3 !   50.1   0.0   6.3e-17   1.6e-13       1      49 []      60     108 ..      60     108 .. 0.97
   4 !   51.7   0.0   2.1e-17   5.3e-14       1      48 [.      85     132 ..      85     132 .. 0.97
   5 !   50.9   0.0   3.5e-17   8.9e-14       1      48 [.     110     157 ..     110     158 .. 0.95
   6 !   22.2   0.0   3.2e-08   8.3e-05       2      33 ..     161     192 ..     161     192 .. 0.98
   7 !   48.6   0.0   1.9e-16   4.8e-13       1      48 [.     193     240 ..     193     241 .. 0.96
   8 !   56.1   0.0   8.7e-19   2.2e-15       1      48 [.     218     265 ..     218     266 .. 0.96
   9 !   54.3   0.0   3.1e-18     8e-15       1      49 []     243     291 ..     243     291 .. 0.98
  10 !   50.7   0.0   4.1e-17     1e-13       1      49 []     268     316 ..     268     316 .. 0.99
  11 !   51.6   0.0   2.2e-17   5.6e-14       1      48 [.     293     340 ..     293     341 .. 0.95
  12 !   37.4   0.0     6e-13   1.5e-09       1      44 [.     318     361 ..     318     364 .. 0.95

  Alignments for each domain:
  == domain 1  score: 6.0 bits;  conditional E-value: 0.0039
     DUF4116 26 DkeivlkAvkqngtal 41
                D++ vlkAv+++g  l
  KOO25116.1  5 DRDAVLKAVQRDGLTL 20
                5566666666666554 PP

  == domain 2  score: 51.4 bits;  conditional E-value: 2.5e-17
     DUF4116  1 DrEivleavkkngsalkylseeLknDkeivlkAvkqngtalsyaseeLr 49
                Dr+ivl av++ng+al+y+ e Lk D+ ivl+Av+qng al+ya e+L+
  KOO25116.1 35 DRDIVLAAVQQNGWALQYVAEPLKADRGIVLAAVQQNGRALEYAAESLK 83
                9*******************************************99986 PP

  == domain 3  score: 50.1 bits;  conditional E-value: 6.3e-17
     DUF4116   1 DrEivleavkkngsalkylseeLknDkeivlkAvkqngtalsyaseeLr 49 
                 Dr ivl av++ng al+y+ e+Lk D++ivl+Av+q+g+al+ya e+L+
  KOO25116.1  60 DRGIVLAAVQQNGRALEYAAESLKADRDIVLAAVQQSGFALEYAAESLK 108
                 899*****************************************99986 PP

  == domain 4  score: 51.7 bits;  conditional E-value: 2.1e-17
     DUF4116   1 DrEivleavkkngsalkylseeLknDkeivlkAvkqngtalsyaseeL 48 
                 Dr+ivl av++ g+al+y+ e+Lk D+++vl+Av+q+g+al ya e+L
  KOO25116.1  85 DRDIVLAAVQQSGFALEYAAESLKADRDFVLAAVQQSGFALHYAAESL 132
                 9******************************************98776 PP

  == domain 5  score: 50.9 bits;  conditional E-value: 3.5e-17
     DUF4116   1 DrEivleavkkngsalkylseeLknDkeivlkAvkqngtalsyaseeL 48 
                 Dr++vl av++ g+al+y+ e+Lk D ++vl+Av+qng al+y+ e L
  KOO25116.1 110 DRDFVLAAVQQSGFALHYAAESLKADHDFVLAAVQQNGEALEYVAEPL 157
                 9******************************************97655 PP

  == domain 6  score: 22.2 bits;  conditional E-value: 3.2e-08
     DUF4116   2 rEivleavkkngsalkylseeLknDkeivlkA 33 
                 ++ivl av++ng+al+y+ e +k D+ ivl+A
  KOO25116.1 161 KDIVLAAVQQNGWALRYAAEGFKADRGIVLEA 192
                 79****************************98 PP

  == domain 7  score: 48.6 bits;  conditional E-value: 1.9e-16
     DUF4116   1 DrEivleavkkngsalkylseeLknDkeivlkAvkqngtalsyaseeL 48 
                 Dr ivl av+++g al+y+ e+Lk D++ivl+Av+q+g+al+ya e++
  KOO25116.1 193 DRGIVLAAVQQDGRALEYAAESLKADRDIVLAAVQQYGFALEYAAESF 240
                 899****************************************98876 PP

  == domain 8  score: 56.1 bits;  conditional E-value: 8.7e-19
     DUF4116   1 DrEivleavkkngsalkylseeLknDkeivlkAvkqngtalsyaseeL 48 
                 Dr+ivl av+++g+al+y+ e++k D+++vl+Av+q+g+al+ya e++
  KOO25116.1 218 DRDIVLAAVQQYGFALEYAAESFKADRDFVLAAVQQYGFALEYAAESF 265
                 9******************************************98876 PP

  == domain 9  score: 54.3 bits;  conditional E-value: 3.1e-18
     DUF4116   1 DrEivleavkkngsalkylseeLknDkeivlkAvkqngtalsyaseeLr 49 
                 Dr++vl av+++g+al+y+ e++k D+++vl+Av+q+g+al ya e+L+
  KOO25116.1 243 DRDFVLAAVQQYGFALEYAAESFKADRDFVLAAVQQSGFALHYAAESLK 291
                 9*******************************************99986 PP

  == domain 10  score: 50.7 bits;  conditional E-value: 4.1e-17
     DUF4116   1 DrEivleavkkngsalkylseeLknDkeivlkAvkqngtalsyaseeLr 49 
                 Dr++vl av++ g+al+y+ e+Lk D+ ivl+Av+q+g+al ya+e+L+
  KOO25116.1 268 DRDFVLAAVQQSGFALHYAAESLKADRGIVLAAVQQSGFALHYADESLK 316
                 9*********************************************997 PP

  == domain 11  score: 51.6 bits;  conditional E-value: 2.2e-17
     DUF4116   1 DrEivleavkkngsalkylseeLknDkeivlkAvkqngtalsyaseeL 48 
                 Dr ivl av++ g+al+y++e+Lk D+++vl+Av+qng al ya e L
  KOO25116.1 293 DRGIVLAAVQQSGFALHYADESLKADRDVVLAAVQQNGEALQYAAEPL 340
                 899****************************************97655 PP

  == domain 12  score: 37.4 bits;  conditional E-value: 6e-13
     DUF4116   1 DrEivleavkkngsalkylseeLknDkeivlkAvkqngtalsya 44 
                 Dr++vl av++ng+al+y+ e Lk D+ ivl A++qng al  +
  KOO25116.1 318 DRDVVLAAVQQNGEALQYAAEPLKADRGIVLVAMQQNGLALQCV 361
                 9**************************************99765 PP

>> Rsbr_N  Rsbr N terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.6   0.0    0.0031       7.9      68      95 ..      45      72 ..      32      88 .. 0.84
   2 ?    2.8   0.0     0.044   1.1e+02      68      95 ..      70      97 ..      66     109 .. 0.84
   3 ?    2.2   0.0     0.067   1.7e+02      68      94 ..      95     121 ..      86     134 .. 0.79
   4 ?    3.7   0.0     0.023        60      61      96 ..     112     148 ..     101     164 .. 0.70
   5 !    5.7   0.0    0.0056        14      61      94 ..     137     171 ..     125     184 .. 0.80
   6 ?    2.2   0.0     0.069   1.8e+02      68      88 ..     170     190 ..     165     193 .. 0.85
   7 ?    1.4   0.0      0.12   3.1e+02      68      94 ..     203     229 ..     198     253 .. 0.73
   8 ?    1.4   0.0      0.12   3.1e+02      61      94 ..     245     279 ..     232     291 .. 0.75
   9 ?    4.3   0.0     0.016        40      61      95 ..     270     305 ..     261     321 .. 0.80
  10 ?    2.7   0.0     0.048   1.2e+02      68      95 ..     303     330 ..     298     342 .. 0.85
  11 ?    0.2   0.0      0.29   7.5e+02      68      94 ..     328     354 ..     317     366 .. 0.87

  Alignments for each domain:
  == domain 1  score: 6.6 bits;  conditional E-value: 0.0031
                HTT--HHHHHHHHHHHHHHHHHHHHH.. CS
      Rsbr_N 68 qlGwpLkyltkgLqefrkvvlellseed 95
                q+Gw L+y+++ L++ r +vl++++++ 
  KOO25116.1 45 QNGWALQYVAEPLKADRGIVLAAVQQNG 72
                79********************999965 PP

  == domain 2  score: 2.8 bits;  conditional E-value: 0.044
                HTT--HHHHHHHHHHHHHHHHHHHHH.. CS
      Rsbr_N 68 qlGwpLkyltkgLqefrkvvlellseed 95
                q+G  L+y +++L++ r++vl++++++ 
  KOO25116.1 70 QNGRALEYAAESLKADRDIVLAAVQQSG 97
                789******************9999864 PP

  == domain 3  score: 2.2 bits;  conditional E-value: 0.067
                 HTT--HHHHHHHHHHHHHHHHHHHHH. CS
      Rsbr_N  68 qlGwpLkyltkgLqefrkvvlellsee 94 
                 q G  L+y +++L++ r+ vl++++++
  KOO25116.1  95 QSGFALEYAAESLKADRDFVLAAVQQS 121
                 679999999999999999999888875 PP

  == domain 4  score: 3.7 bits;  conditional E-value: 0.023
                 HHHHHHH.HTT--HHHHHHHHHHHHHHHHHHHHH..T CS
      Rsbr_N  61 efaerlv.qlGwpLkyltkgLqefrkvvlellseedd 96 
                 +f+  +v q G  L+y +++L++  + vl++++++ +
  KOO25116.1 112 DFVLAAVqQSGFALHYAAESLKADHDFVLAAVQQNGE 148
                 5666666246999999999999999999888888653 PP

  == domain 5  score: 5.7 bits;  conditional E-value: 0.0056
                 HHHHHHH.HTT--HHHHHHHHHHHHHHHHHHHHH. CS
      Rsbr_N  61 efaerlv.qlGwpLkyltkgLqefrkvvlellsee 94 
                 +f+  +v q+G  L+y+++ L++++++vl++++++
  KOO25116.1 137 DFVLAAVqQNGEALEYVAEPLKAIKDIVLAAVQQN 171
                 56666662579999999999999999999999875 PP

  == domain 6  score: 2.2 bits;  conditional E-value: 0.069
                 HTT--HHHHHHHHHHHHHHHH CS
      Rsbr_N  68 qlGwpLkyltkgLqefrkvvl 88 
                 q+Gw L y ++g ++ r +vl
  KOO25116.1 170 QNGWALRYAAEGFKADRGIVL 190
                 89**********998887776 PP

  == domain 7  score: 1.4 bits;  conditional E-value: 0.12
                 HTT--HHHHHHHHHHHHHHHHHHHHH. CS
      Rsbr_N  68 qlGwpLkyltkgLqefrkvvlellsee 94 
                 q G  L+y +++L++ r++vl+++++ 
  KOO25116.1 203 QDGRALEYAAESLKADRDIVLAAVQQY 229
                 568889999999999999998888774 PP

  == domain 8  score: 1.4 bits;  conditional E-value: 0.12
                 HHHHHHH.HTT--HHHHHHHHHHHHHHHHHHHHH. CS
      Rsbr_N  61 efaerlv.qlGwpLkyltkgLqefrkvvlellsee 94 
                 +f+  +v q G  L+y +++ ++ r+ vl++++++
  KOO25116.1 245 DFVLAAVqQYGFALEYAAESFKADRDFVLAAVQQS 279
                 56655662579999999999999999888888775 PP

  == domain 9  score: 4.3 bits;  conditional E-value: 0.016
                 HHHHHHH.HTT--HHHHHHHHHHHHHHHHHHHHH.. CS
      Rsbr_N  61 efaerlv.qlGwpLkyltkgLqefrkvvlellseed 95 
                 +f+  +v q G  L+y +++L++ r +vl++++++ 
  KOO25116.1 270 DFVLAAVqQSGFALHYAAESLKADRGIVLAAVQQSG 305
                 5666666257*******************9999865 PP

  == domain 10  score: 2.7 bits;  conditional E-value: 0.048
                 HTT--HHHHHHHHHHHHHHHHHHHHH.. CS
      Rsbr_N  68 qlGwpLkyltkgLqefrkvvlellseed 95 
                 q G  L+y  ++L++ r+vvl++++++ 
  KOO25116.1 303 QSGFALHYADESLKADRDVVLAAVQQNG 330
                 78*********************99965 PP

  == domain 11  score: 0.2 bits;  conditional E-value: 0.29
                 HTT--HHHHHHHHHHHHHHHHHHHHH. CS
      Rsbr_N  68 qlGwpLkyltkgLqefrkvvlellsee 94 
                 q+G  L+y ++ L++ r +vl +++++
  KOO25116.1 328 QNGEALQYAAEPLKADRGIVLVAMQQN 354
                 7899*****************999986 PP

>> PRA-CH  Phosphoribosyl-AMP cyclohydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.0      0.83   2.1e+03      48      62 ..      33      47 ..      30      50 .. 0.86
   2 ?    0.2   0.0      0.26   6.6e+02      39      62 ..      74      97 ..      68     106 .. 0.79
   3 ?    4.4   0.0     0.013        33      35      70 ..      95     130 ..      85     132 .. 0.86
   4 ?    1.5   0.0      0.11   2.7e+02      35      63 ..     120     148 ..     119     150 .. 0.85
   5 ?   -0.7   0.0       0.5   1.3e+03      40      62 ..     208     230 ..     198     236 .. 0.79
   6 ?   -1.6   0.0      0.97   2.5e+03      47      62 ..     240     255 ..     227     264 .. 0.82
   7 ?    2.2   0.0     0.063   1.6e+02      47      70 ..     265     288 ..     252     290 .. 0.83
   8 ?    3.2   0.0      0.03        78      35      63 ..     303     331 ..     293     335 .. 0.88

  Alignments for each domain:
  == domain 1  score: -1.4 bits;  conditional E-value: 0.83
                -TTSSEEEEEEEESS CS
      PRA-CH 48 DcDqDalllkveqkg 62
                + D+D +l+ v+q+g
  KOO25116.1 33 NEDRDIVLAAVQQNG 47
                679*********997 PP

  == domain 2  score: 0.2 bits;  conditional E-value: 0.26
                -EEEEEEEE-TTSSEEEEEEEESS CS
      PRA-CH 39 vqkvkeirlDcDqDalllkveqkg 62
                 ++  + +l  D+D +l+ v+q+g
  KOO25116.1 74 ALEYAAESLKADRDIVLAAVQQSG 97
                55566667889**********987 PP

  == domain 3  score: 4.4 bits;  conditional E-value: 0.013
                 TTS--EEEEEEEE-TTSSEEEEEEEESS-SSTTSBS CS
      PRA-CH  35 tSgnvqkvkeirlDcDqDalllkveqkgaaCHtgke 70 
                 +Sg  ++  + +l  D+D +l+ v+q+g a H  +e
  KOO25116.1  95 QSGFALEYAAESLKADRDFVLAAVQQSGFALHYAAE 130
                 688888888889999************999998665 PP

  == domain 4  score: 1.5 bits;  conditional E-value: 0.11
                 TTS--EEEEEEEE-TTSSEEEEEEEESS- CS
      PRA-CH  35 tSgnvqkvkeirlDcDqDalllkveqkga 63 
                 +Sg  ++  + +l  D+D +l+ v+q+g+
  KOO25116.1 120 QSGFALHYAAESLKADHDFVLAAVQQNGE 148
                 678888888889999***********985 PP

  == domain 5  score: -0.7 bits;  conditional E-value: 0.5
                 EEEEEEEE-TTSSEEEEEEEESS CS
      PRA-CH  40 qkvkeirlDcDqDalllkveqkg 62 
                 ++  + +l  D+D +l+ v+q g
  KOO25116.1 208 LEYAAESLKADRDIVLAAVQQYG 230
                 5555667789*********9976 PP

  == domain 6  score: -1.6 bits;  conditional E-value: 0.97
                 E-TTSSEEEEEEEESS CS
      PRA-CH  47 lDcDqDalllkveqkg 62 
                 +  D+D +l+ v+q g
  KOO25116.1 240 FKADRDFVLAAVQQYG 255
                 6789********9976 PP

  == domain 7  score: 2.2 bits;  conditional E-value: 0.063
                 E-TTSSEEEEEEEESS-SSTTSBS CS
      PRA-CH  47 lDcDqDalllkveqkgaaCHtgke 70 
                 +  D+D +l+ v+q+g a H  +e
  KOO25116.1 265 FKADRDFVLAAVQQSGFALHYAAE 288
                 678************999998665 PP

  == domain 8  score: 3.2 bits;  conditional E-value: 0.03
                 TTS--EEEEEEEE-TTSSEEEEEEEESS- CS
      PRA-CH  35 tSgnvqkvkeirlDcDqDalllkveqkga 63 
                 +Sg  ++  + +l  D+D++l+ v+q+g+
  KOO25116.1 303 QSGFALHYADESLKADRDVVLAAVQQNGE 331
                 78888888899999***********9985 PP

>> TNT  Tuberculosis necrotizing toxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.9   0.0     0.015        38      45      72 ..      53      80 ..      29     104 .. 0.82
   2 ?    1.4   0.0      0.19   4.8e+02      45      71 ..     153     179 ..     124     222 .. 0.71
   3 !    6.2   0.0    0.0061        16      38      77 ..     330     368 ..     279     380 .. 0.79

  Alignments for each domain:
  == domain 1  score: 4.9 bits;  conditional E-value: 0.015
                E.----EEEEEB--BTTB----EEEEEE CS
         TNT 45 vlkpleveaGeiapwfgqpGgGvqyelv 72
                v +pl++ +G + ++++q+G ++ y  +
  KOO25116.1 53 VAEPLKADRGIVLAAVQQNGRALEYAAE 80
                669999***************9999764 PP

  == domain 2  score: 1.4 bits;  conditional E-value: 0.19
                 E.----EEEEEB--BTTB----EEEEE CS
         TNT  45 vlkpleveaGeiapwfgqpGgGvqyel 71 
                 v +pl++ +  + ++++q+G +++y  
  KOO25116.1 153 VAEPLKAIKDIVLAAVQQNGWALRYAA 179
                 446666666666666666666666654 PP

  == domain 3  score: 6.2 bits;  conditional E-value: 0.0061
                 S-EEEEEE.----EEEEEB--BTTB----EEEEEE---HH CS
         TNT  38 knyhvYevlkpleveaGeiapwfgqpGgGvqyelvkssvk 77 
                  +  +Y   +pl++ +G +  +++q+G ++q ++++++++
  KOO25116.1 330 GEALQYAA-EPLKADRGIVLVAMQQNGLALQCVTDYGEIA 368
                 55556655.8999999999999999999999999866554 PP

>> gpW  gpW
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.1   0.0     0.034        88      24      40 ..      66      82 ..      61      86 .. 0.87
   2 ?   -2.0   0.0       1.4   3.5e+03      24      40 ..      91     107 ..      89     114 .. 0.86
   3 ?    5.6   0.0    0.0056        14      24      40 ..     199     215 ..     194     220 .. 0.87

  Alignments for each domain:
  == domain 1  score: 3.1 bits;  conditional E-value: 0.034
                EEEEETTEEEEEEGGGH CS
         gpW 24 vtVqkdgrrVeytaasv 40
                ++Vq +gr  ey+a s+
  KOO25116.1 66 AAVQQNGRALEYAAESL 82
                89***********9886 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 1.4
                 EEEEETTEEEEEEGGGH CS
         gpW  24 vtVqkdgrrVeytaasv 40 
                 ++Vq  g   ey+a s+
  KOO25116.1  91 AAVQQSGFALEYAAESL 107
                 68999999*****9886 PP

  == domain 3  score: 5.6 bits;  conditional E-value: 0.0056
                 EEEEETTEEEEEEGGGH CS
         gpW  24 vtVqkdgrrVeytaasv 40 
                 ++Vq dgr  ey+a s+
  KOO25116.1 199 AAVQQDGRALEYAAESL 215
                 89***********9886 PP

>> AdoMet_dc  S-adenosylmethionine decarboxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.8   0.1     0.055   1.4e+02      49      95 ..     113     159 ..      76     170 .. 0.78
   2 ?   -1.2   0.0      0.92   2.4e+03      81     106 .]     170     195 ..     152     195 .. 0.82
   3 ?   -1.9   0.0       1.5   3.9e+03      71      97 ..     218     244 ..     207     253 .. 0.70
   4 ?    6.8   0.0    0.0031       8.1      27      97 ..     275     344 ..     263     351 .. 0.79

  Alignments for each domain:
  == domain 1  score: 2.8 bits;  conditional E-value: 0.055
                 EEEEEETTEEEEEEEEGGGTEEEEEEEEESTHHHHHHHHHHHHHHT- CS
   AdoMet_dc  49 svvvliaeShlsiHtwpetgyaaiDvftcgeispekaleylieafka 95 
                  v++ +++S +++H   e   a+ D +     +  +aley++e +ka
  KOO25116.1 113 FVLAAVQQSGFALHYAAESLKADHDFVLAAVQQNGEALEYVAEPLKA 159
                 57788899999**************9999999999999999999887 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 0.92
                 HHHHHHHHHHHHHT-SEEEEEEEEEE CS
   AdoMet_dc  81 spekaleylieafkadrvtvdelkRG 106
                 +   al+y +e fkadr  v e++RG
  KOO25116.1 170 QNGWALRYAAEGFKADRGIVLEADRG 195
                 55679999********9999999997 PP

  == domain 3  score: -1.9 bits;  conditional E-value: 1.5
                 EEEEEEESTHHHHHHHHHHHHHHT-SE CS
   AdoMet_dc  71 aiDvftcgeispekaleylieafkadr 97 
                 + D++     +   aley +e+fkadr
  KOO25116.1 218 DRDIVLAAVQQYGFALEYAAESFKADR 244
                 445555555555668888888888876 PP

  == domain 4  score: 6.8 bits;  conditional E-value: 0.0031
                 HHHHCT-EEEEEEEEE-SSS-EEEEEEETTEEEEEEEEGGGTEEEEEEEEESTHHHHHHHHHHHHHHT-SE CS
   AdoMet_dc  27 aaeaigatvlsvafhkfepeGvsvvvliaeShlsiHtwpetgyaaiDvftcgeispekaleylieafkadr 97 
                 a++++g   l+ a  + + +   v++ +++S +++H   e   a+ Dv+     +  +al+y +e +kadr
  KOO25116.1 275 AVQQSGF-ALHYAAESLKADRGIVLAAVQQSGFALHYADESLKADRDVVLAAVQQNGEALQYAAEPLKADR 344
                 5555555.4455555554444457788899**************************************997 PP

>> DUF2150  Uncharacterized protein conserved in archaea (DUF2150)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.9   0.1     0.036        93      48     103 ..      64     119 ..      62     131 .. 0.80
   2 ?    3.6   0.0     0.023        59      48     103 ..     114     169 ..     111     187 .. 0.86
   3 ?    4.9   0.2    0.0089        23      48     128 ..     139     219 ..     137     232 .. 0.82
   4 ?    3.5   0.1     0.024        62      48     105 ..     197     254 ..     195     279 .. 0.86
   5 ?    3.4   0.2     0.027        69      48     104 ..     297     353 ..     295     390 .. 0.79
   6 ?   -0.2   0.0      0.33   8.4e+02     137     177 ..     510     550 ..     467     555 .. 0.84

  Alignments for each domain:
  == domain 1  score: 2.9 bits;  conditional E-value: 0.036
     DUF2150  48 iikaveeeelskeeAleeleevreivleeveeddeekeeliesvqtsllvvfaaae 103
                 +++av+++    e A+e+l++ r+ivl+ v++    +e   es++     v+aa++
  KOO25116.1  64 VLAAVQQNGRALEYAAESLKADRDIVLAAVQQSGFALEYAAESLKADRDFVLAAVQ 119
                 67888999999999999999999999999999777777777777777666666655 PP

  == domain 2  score: 3.6 bits;  conditional E-value: 0.023
     DUF2150  48 iikaveeeelskeeAleeleevreivleeveeddeekeeliesvqtsllvvfaaae 103
                 +++av++  +  + A+e+l++ ++ vl+ v+++ e +e + e ++    +v+aa++
  KOO25116.1 114 VLAAVQQSGFALHYAAESLKADHDFVLAAVQQNGEALEYVAEPLKAIKDIVLAAVQ 169
                 67888999999999999999999999999999999999999999888888888876 PP

  == domain 3  score: 4.9 bits;  conditional E-value: 0.0089
     DUF2150  48 iikaveeeelskeeAleeleevreivleeveeddeekeeliesvqtsllvvfaaaeeyieggvakekdieelvkaaaeaea 128
                 +++av+++    e  +e l+++++ivl+ v+++   +    e+ +    +v++a +  +   v+++ +  e+  + ++a++
  KOO25116.1 139 VLAAVQQNGEALEYVAEPLKAIKDIVLAAVQQNGWALRYAAEGFKADRGIVLEADRGIVLAAVQQDGRALEYAAESLKADR 219
                 5677888888888889999************99999999999999999999999999999999998888888777777763 PP

  == domain 4  score: 3.5 bits;  conditional E-value: 0.024
     DUF2150  48 iikaveeeelskeeAleeleevreivleeveeddeekeeliesvqtsllvvfaaaeey 105
                 +++av+++    e A+e+l++ r+ivl+ v++    +e   es +     v+aa+++y
  KOO25116.1 197 VLAAVQQDGRALEYAAESLKADRDIVLAAVQQYGFALEYAAESFKADRDFVLAAVQQY 254
                 678999999999*******************999999999999999999999999988 PP

  == domain 5  score: 3.4 bits;  conditional E-value: 0.027
     DUF2150  48 iikaveeeelskeeAleeleevreivleeveeddeekeeliesvqtsllvvfaaaee 104
                 +++av++  +  + A e+l++ r++vl+ v+++ e ++   e ++    +v++a+++
  KOO25116.1 297 VLAAVQQSGFALHYADESLKADRDVVLAAVQQNGEALQYAAEPLKADRGIVLVAMQQ 353
                 688999999*****************************9999999999999999875 PP

  == domain 6  score: -0.2 bits;  conditional E-value: 0.33
     DUF2150 137 eivaqiGakvidgeklpekvledleyglvaewldgidslaa 177
                 +++   Ga+  + +k+  ++ +d  y  +  +++++d++++
  KOO25116.1 510 TLAGTSGARLRHKRKCRARIESDSGYKALHKMIKQLDRISN 550
                 5677889999999999999999999999********99986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (649 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       649  (0.0361983); expected 358.6 (0.02)
Passed bias filter:                      433  (0.0241508); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.62u 0.25s 00:00:00.87 Elapsed: 00:00:00.39
# Mc/sec: 5049.78
//
Query:       KOO25117.1  [L=387]
Description: iq domain-containing protein d [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
      0.003   17.8  17.2     0.0089   16.2   5.4    2.6  2  Fib_alpha       Fibrinogen alpha/beta chain family
  ------ inclusion threshold ------
       0.36    8.3  36.5       0.46    7.9  36.5    1.1  1  DUF3584         Protein of unknown function (DUF3584)
       0.96    7.0   6.8        1.3    6.6   6.8    1.2  1  ACR_tran        AcrB/AcrD/AcrF family
        4.3    7.7   7.0        8.3    6.8   0.5    3.1  3  DUF1922         Domain of unknown function (DUF1922)


Domain annotation for each model (and alignments):
>> Fib_alpha  Fibrinogen alpha/beta chain family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.8   3.9    0.0016       7.2      72     116 ..     170     214 ..     130     233 .. 0.68
   2 !   16.2   5.4     2e-06    0.0089      50     129 ..     245     324 ..     236     327 .. 0.89

  Alignments for each domain:
  == domain 1  score: 6.8 bits;  conditional E-value: 0.0016
                 HHHHHHHHHHHHHHHHHCCCHHHHHHHCCHHHHHHHHHHHHHHHH CS
   Fib_alpha  72 kkdndnvikksskeleeeilrlketidaqesnirvLqnvlesneq 116
                 +++ ++ +++++ke++ e ++ ++ +++ e++i++L++ le+ ++
  KOO25117.1 170 EEKASQQLRQLQKEIKAEKADRERDVSQREETIKKLRDELENIKS 214
                 222356677777777777777777777777777777777776654 PP

  == domain 2  score: 16.2 bits;  conditional E-value: 2e-06
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
   Fib_alpha  50 stkeaeelvkeikdslrekqkskkdndnvikksskeleeeilrlketidaqesnirvLqnvlesneqkiqkLeqdidqke 129
                  ++e  +l++e+k++ +e+++s+++  +   k+++e++  i ++++++ ++ ++i +L+ ++++ ++++++Le+  ++++
  KOO25117.1 245 LQSELTRLIEELKTKRKENKESEEGLRKKKVKFESEVQACIDKYDKEMEEKDKEISALKLIYDEEKKELTRLEEYFSKLM 324
                 46678889999999999999999999999999*****************************************9887776 PP

>> DUF3584  Protein of unknown function (DUF3584)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.9  36.5    0.0001      0.46     271     488 ..     148     380 ..      91     386 .. 0.73

  Alignments for each domain:
  == domain 1  score: 7.9 bits;  conditional E-value: 0.0001
     DUF3584 271 lkadeerlaekqe....evqeakaelkqqlrtledelkeaidelnqelsaakaklaakeselealeeqkkkyedadie...klkadldq......lpsi 356
                   ++  ++++++e    e+ +++++  qqlr+l++e+k +++ ++ ++s+ ++ +++ ++ele++++   +  ++++e   k+++d+d+      + s+
  KOO25117.1 148 KLSTSVEEEKSKEdwflEISAKEEKASQQLRQLQKEIKAEKADRERDVSQREETIKKLRDELENIKSATIAE-EKQLEaesKASEDADNaaftdkENSL 245
                 333333344444411115678889999**************************************9865443.33333112455666551111116789 PP

     DUF3584 357 rseleeleeeldaltekhqdvqekydrrkqkikeeleeeleklker.leaireekdrl..kaaieealealesqlrkqleaqkeelneeekelesrlse 452
                 +sel+ l eel+   ++ ++ +e + ++k k ++e ++ + k +++ +e+ +e  + +    +++++l  le+ + k + + + +l++e+k+ e+r+ e
  KOO25117.1 246 QSELTRLIEELKTKRKENKESEEGLRKKKVKFESEVQACIDKYDKEmEEKDKEISALKliYDEEKKELTRLEEYFSKLMAEREVALAQERKKAEQRARE 344
                 9999999999999999999999999999999999999999999999555555555544777899999*********99999999999999999999888 PP

     DUF3584 453 lklrldsatateEeleqieeadealekaqeelekae 488
                 + + ++  +a    ++  + ++ + e a++++  a+
  KOO25117.1 345 QAQMATLSKAATMVQKLWRGKEGRNELAKKKAAGAK 380
                 877666555555444445566666666666555555 PP

>> ACR_tran  AcrB/AcrD/AcrF family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6   6.8   0.00029       1.3     576     722 ..     142     287 ..     104     295 .. 0.77

  Alignments for each domain:
  == domain 1  score: 6.6 bits;  conditional E-value: 0.00029
                 HHHHHHHHHHHHHTTTTEEEEEEEECECSSE..ECCCEEEEEEEES-GCGS-SGGGSHHHHHHHHHHHCTTSTSSEEEEEETTSSCCCSSSSCEEEEEE CS
    ACR_tran 576 tqkvlkqvekilkekpevesvfavtGfaesgdtagpnsakvfisLkpekerkeeeksvealierlrkelkkipganvellapiqlreletlsgvrselq 674
                  ++  +++++ ++e+++ e+ f     +e++  ++  + +  i+   +++r+ +  ++e+ i++lr+el++i+ a ++  +  + + + +    ++++ 
  KOO25117.1 142 KSQTYAKLSTSVEEEKSKEDWFLEISAKEEKASQQLRQLQKEIKA-EKADRERDVSQREETIKKLRDELENIKSATIAEEKQLEAESKASEDADNAAFT 239
                 556667777788877777888877777666645555555555553.3556888999********************88877777777777777888888 PP

                 E.SSSSHHHHHHHHHHHHHHHHCCSTTE.EEEEESS-S-EEEEEEEE-H CS
    ACR_tran 675 vklfgddleaLseaaeqllaalkelpel.sdvrseqqedqpqlqveidr 722
                 +   ++ +++L+++ e+l+++ ke++e  + +r++  + + ++q  id+
  KOO25117.1 240 D-KENSLQSELTRLIEELKTKRKENKESeEGLRKKKVKFESEVQACIDK 287
                 8.77778899***************997456777777777777776665 PP

>> DUF1922  Domain of unknown function (DUF1922)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.0       1.6   7.3e+03      27      41 ..       7      21 ..       6      25 .. 0.81
   2 ?    6.8   0.5    0.0019       8.3      35      59 ..     162     186 ..     153     194 .. 0.84
   3 ?    3.3   0.5     0.023   1.1e+02      38      64 ..     346     372 ..     329     375 .. 0.83

  Alignments for each domain:
  == domain 1  score: -2.6 bits;  conditional E-value: 1.6
                EEEE--SSS-BS--S CS
     DUF1922 27 ktikvkerrilkkae 41
                k ++v+ +ri++  e
  KOO25117.1  7 KLTNVEAQRIMAILE 21
                7789999**998765 PP

  == domain 2  score: 6.8 bits;  conditional E-value: 0.0019
                 S-BS--SSHHHHHHHHHHHSS---S CS
     DUF1922  35 rilkkaedaeeAselVrklqeekyG 59 
                   l+  +++e+As+  r+lq+e++ 
  KOO25117.1 162 WFLEISAKEEKASQQLRQLQKEIKA 186
                 567888999*************975 PP

  == domain 3  score: 3.3 bits;  conditional E-value: 0.023
                 S--SSHHHHHHHHHHHSS---S-TTSS CS
     DUF1922  38 kkaedaeeAselVrklqeekyGltafk 64 
                 ++ ++  +A+ +V+kl  +k G  ++ 
  KOO25117.1 346 AQMATLSKAATMVQKLWRGKEGRNELA 372
                 45667889*************998765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (387 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      3434  (0.191533); expected 358.6 (0.02)
Passed bias filter:                      583  (0.0325172); expected 358.6 (0.02)
Passed Vit filter:                       132  (0.00736237); expected 17.9 (0.001)
Passed Fwd filter:                        41  (0.0022868); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 1.01u 0.37s 00:00:01.38 Elapsed: 00:00:00.51
# Mc/sec: 2293.09
//
Query:       KOO25118.1  [L=750]
Description: calpain-7-like protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    3.1e-42  144.6   0.0    4.2e-42  144.2   0.0    1.1  1  Peptidase_C2  Calpain family cysteine protease
    3.5e-20   72.7   0.0    9.8e-09   35.6   0.0    3.7  3  Calpain_III   Calpain large subunit, domain III
  ------ inclusion threshold ------
      0.078   13.4   0.0       0.19   12.1   0.0    1.6  1  DUF4399       Domain of unknown function (DUF4399)


Domain annotation for each model (and alignments):
>> Peptidase_C2  Calpain family cysteine protease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  144.2   0.0     7e-46   4.2e-42      23     293 ..      31     312 ..      17     315 .. 0.79

  Alignments for each domain:
  == domain 1  score: 144.2 bits;  conditional E-value: 7e-46
  Peptidase_C2  23 kkveWkRpkeive.npkfivdgasrtdikqGelgdCwllaaiasltlk.....ekllkrvvpkeqsf.ee..kyaGifhfrfwrfg..ewvdvvvDD 108
                   +  +W Rp+++++ +p++i   +s+  i+q  + dC +++++   +       ++l+++++ ++ s  +   + aG + +++  +g  + v v+vDD
    KOO25118.1  31 HFGRWARPSQFMRgEPTMIY-LISSLSITQTIITDCSFVSSLVIAAAYerrhgKQLITNIIWPQDSRgQPiyNPAGKYMVKLHVNGipRKVLVLVDD 126
                   4568********94477664.79*****************98877754222236899999999987763224679*********99545777899** PP

  Peptidase_C2 109 rlPt.vngklvfvksaeknefWsalleKAyAklhgsyealkggstsealedftggvtesiel.elkeapkelfkilkkalerg.slmgcsieassae 202
                   rlP  ++g+l+  ++++  e+W++++eKAy kl+g y+   g ++   +  +tg + e+++  +++ +pk+l++ +++a + g +l++ ++    + 
    KOO25118.1 127 RLPLaKDGQLMTSHTTHPAELWVSIIEKAYMKLNGGYD-FPGSNSGIDMFALTGWIPEQYRSdDKDFEPKRLWERMQSASRYGdCLLTVATGELDEL 222
                   ***956799999*************************9.667777777899*********98433457788******88776515666655555556 PP

  Peptidase_C2 203 eleaklengLvkgHaYsvtaveevelkkekvkLirlrnPWGeveWkGawsdk.skeWeevseeekekl.....klkkkedgefwmsfedflknFtkl 293
                   + +++ + gLvk HaY+v++v+e  +     kL++l+nPW +v WkGa+s + +++W+      ++ l     +  ++++g fw+++  +l++++ +
    KOO25118.1 223 HGQEEEKIGLVKTHAYAVLQVREA-CG---EKLLQLKNPWSKVRWKGAFSVHdQQRWTAA---LRKALdydqtSAMQHDNGVFWIDYASLLRYYQGV 312
                   66667799***************8.34...69******************872556*654...3333333333667889***************976 PP

>> Calpain_III  Calpain large subunit, domain III
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.5   0.0    0.0063        38      17     137 ..     344     452 ..     329     456 .. 0.57
   2 !   28.1   0.0   3.3e-10     2e-06       1     133 [.     473     589 ..     473     595 .. 0.79
   3 !   35.6   0.0   1.6e-12   9.8e-09       1     128 [.     616     731 ..     616     739 .. 0.77

  Alignments for each domain:
  == domain 1  score: 4.5 bits;  conditional E-value: 0.0063
  Calpain_III  17 etfwkNPqfrleleeeededeeekkctvlvslmqknrrkerkkgeelltigfavykveeeeenrklrkeffaknqevarsstfinsrevvkrfklppG 114
                  ++  +NPqf l+l+               + l + ++  + + ++++lti  +v+k     e+  +r  ++++     ++  ++n+  +  +f+lppG
   KOO25118.1 344 ASLGRNPQFALTLTVP----P-GAPAATWLLLTR-HTVFKDQGKDDFLTI--HVFKG----ERGGFRCYYLEE---AWKEGVYSNRPHCLVQFDLPPG 426
                  5566899999999883....1.122333333444.333323333466666..88883....233333333222...3456779999899999999999 PP

  Calpain_III 115 eYvivPstfe...pneegeFlLrvFs 137
                  +  ++    +      + +F+L+vFs
   KOO25118.1 427 QHQLTLALAQytpVPYQVDFTLKVFS 452
                  87554333220112356778888877 PP

  == domain 2  score: 28.1 bits;  conditional E-value: 3.3e-10
  Calpain_III   1 geWvkgstAGGcrnkketfwkNPqfrleleeeededeeekkctvlvslmqknrrkerkkgeelltigfavykveeeeenrklrkeffaknqevarsst 98 
                  g+W +g +AGGc n+ +tf+ NP+  l ++e        +   v v+l     +   +++  l ++g++++ +++   + kl+++      ++a+s  
   KOO25118.1 473 GSW-HGPSAGGCANY-DTFVDNPRVALVVPEG-------PPADVQVELHVPAAKA-ASDRVALPSVGLELLALDSALGTDKLPSK------SLAASGA 554
                  789.899*****975.*************993.......5788999998865555.555578899*******6554444444444......4666777 PP

  Calpain_III  99 finsrevvkrfklppGeYvivPstfepneegeFlL 133
                  + +   + +   l +G+Y ++ stfep +e+ F +
   KOO25118.1 555 YRRGFCLLEVRGLAAGRYALTASTFEPRQEAGFSV 589
                  777777777778*******************9976 PP

  == domain 3  score: 35.6 bits;  conditional E-value: 1.6e-12
  Calpain_III   1 geWvkgstAGGcrnkketfwkNPqfrleleeeededeeekkctvlvslmqknrrkerkkgeelltigfavykv..eeeeenrklrkeffaknqevars 96 
                  g+W +gstA Gc n+  +f +NPq+rl +++         + ++lv l     ++    g +  + g+ +y+       ++++ r++ +++       
   KOO25118.1 616 GAWAAGSTAAGCPNF-GNFHNNPQYRLAVSR---------RTEFLVRLRLSPAER--AGGGKRPALGLDLYQRdaPLGPDEARGRSQPLRSA--NGGV 699
                  89**********975.99***********88.........589****99955544..55556689*******64433334444444443333..3555 PP

  Calpain_III  97 stfinsrevvkrfklppGeYvivPstfepnee 128
                   ++     +  r  l++G Yv+vPstfep + 
   KOO25118.1 700 YSYPAGGMLLARAPLEAGVYVLVPSTFEPLAA 731
                  568899999*******************9765 PP

>> DUF4399  Domain of unknown function (DUF4399)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   3.2e-05      0.19      55      80 ..     420     445 ..     415     452 .. 0.87

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 3.2e-05
     DUF4399  55 elelppGkhtLqlqlgdaahvplkps 80 
                 + +lppG+h+L+l l+ ++ vp++ +
  KOO25118.1 420 QFDLPPGQHQLTLALAQYTPVPYQVD 445
                 679*******************9855 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (750 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       277  (0.0154498); expected 358.6 (0.02)
Passed bias filter:                      270  (0.0150594); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.57u 0.27s 00:00:00.84 Elapsed: 00:00:00.43
# Mc/sec: 5293.30
//
Query:       KOO25119.1  [L=193]
Description: cyclase dehydrase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.4e-12   47.2   0.0    2.8e-12   46.9   0.0    1.1  1  Polyketide_cyc   Polyketide cyclase / dehydrase and lipid tra
    9.1e-09   35.7   0.0    1.2e-08   35.3   0.0    1.2  1  Polyketide_cyc2  Polyketide cyclase / dehydrase and lipid tra


Domain annotation for each model (and alignments):
>> Polyketide_cyc  Polyketide cyclase / dehydrase and lipid transport
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.9   0.0   3.2e-16   2.8e-12       2     129 ..      37     182 ..      36     183 .. 0.90

  Alignments for each domain:
  == domain 1  score: 46.9 bits;  conditional E-value: 3.2e-16
                     SS-HHHHHHHHTTTGGCCSCCCCEEEEEE.SSSEE...E....EEECSTTSSCEEEEEEEEEEETTT......EEECTTC.CCCCEEEEEEEECT CS
  Polyketide_cyc   2 papadqvyalvadvesypeflphcssvevleeaesglsa....dlevgfggltesftarvtldppee......itfklve.gdfkslegkWties 85 
                     +a +++v+a+++d++++ + +p++  ++     + g++      ++++ + +++s+t + t++ +e       i f+lve   f s+ g+W++++
      KOO25119.1  37 DAAPSKVWAILTDYDNLATHVPNLIQSRRRPHPTGGIRLfqegAQKIVGFDFRASLTMDMTEVTEEGalrpsrILFELVEsAMFASFDGEWRVQP 131
                     58899*****************************866668889999***************************8888877258************ PP

                     ECC.EEE.......CEEEEEEEEEEEE-SSCHHHHHHHHHHHHHHHHHHHHH CS
  Polyketide_cyc  86 lpp.nsg.......gtrtkvalevdfkfaspllgalvgqvaervldellaal 129
                     +++ +         + + k+++ v++++++ +++++++  ++++++ +l a+
      KOO25119.1 132 YSRvR-SladpskyEYKSKLSYRVNITPKGLVPVPALEWRIREDVPVNLLAV 182
                     **952.35677778888999999999********************999776 PP

>> Polyketide_cyc2  Polyketide cyclase / dehydrase and lipid transport
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.3   0.0   1.4e-12   1.2e-08       3     141 ..      29     185 ..      27     187 .. 0.68

  Alignments for each domain:
  == domain 1  score: 35.3 bits;  conditional E-value: 1.4e-12
                      EEEEEEEESS-HHHHHHHHTTTTGGGGT-TTEEEEECSESTSSS.......TTTEEEEECCCS...SEEEEEEEEEET....TTTEEEEEEE.S CS
  Polyketide_cyc2   3 kvtvsvviaappekVwalvsdfenwprWhpevarveleggggpa.......rgvegtvrvggr...gtvreelvevdp....egrllsyrivkp 82 
                      ++++sv  +a p kVwa+++d++n+++  p++ +++++  ++p+       +g++  v        + +++  +ev++    ++ ++ +++v+ 
       KOO25119.1  29 CISASVIADAAPSKVWAILTDYDNLATHVPNLIQSRRR--PHPTggirlfqEGAQKIVG---FdfrASLTMDMTEVTEegalRPSRILFELVES 117
                      689999888************************99766..6666344444433333333...25556677777777541335677777777778 PP

                      SS-TSEEEEEEEEE.......CCET.....EEEEEEEEEEEE--TT--HHHHHHHHHHHHHHHHHHHHHHH CS
  Polyketide_cyc2  83 vpvanyvatwtvtp.......dggg.....trvtwtgefdagplggpfekpaaakavkgdleagLerLkar 141
                        +a++ ++w+v+p       +++      +++++++ +    ++g++  pa++  +++d+  +L + ka+
       KOO25119.1 118 AMFASFDGEWRVQPysrvrslADPSkyeykSKLSYRVNIT---PKGLVPVPALEWRIREDVPVNLLAVKAA 185
                      88999*********77766642222344445566666555...5777777778888887777777776665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (193 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       283  (0.0157845); expected 358.6 (0.02)
Passed bias filter:                      275  (0.0153383); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.40u 0.25s 00:00:00.65 Elapsed: 00:00:00.41
# Mc/sec: 1407.51
//
Query:       KOO25120.1  [L=110]
Description: phd finger-like domain-containing protein 5a [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    4.9e-51  171.3  13.9    5.4e-51  171.1  13.9    1.0  1  PHF5          PHF5-like protein
  ------ inclusion threshold ------
      0.054   11.4   9.8      0.056   11.3   9.8    1.2  1  PolC_DP2      DNA polymerase II large subunit DP2
      0.074   13.4   3.6      0.074   13.4   3.6    2.8  2  C1_2          C1 domain
        4.8    7.3  20.2       0.43   10.7   3.2    2.9  2  DZR           Double zinc ribbon


Domain annotation for each model (and alignments):
>> PHF5  PHF5-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  171.1  13.9   1.2e-54   5.4e-51       1     104 []       1     104 [.       1     104 [. 0.99

  Alignments for each domain:
  == domain 1  score: 171.1 bits;  conditional E-value: 1.2e-54
        PHF5   1 msrhqadlvlcrkqpGtaigklcekcdgkcpicdslvkpatkvricdecsfgkleekciicgskgvsdayyclecvrlekdrdGcpriinvgssktdll 99 
                 m++h++dl++crkqpG+++g+lcekcdgkcp+cds+v+p+  vricdec++g+++++c+icg+ g+sdayyc+ec+++ekdrdGcp+i+n+gssktdl+
  KOO25120.1   1 MAKHHPDLIMCRKQPGISVGRLCEKCDGKCPVCDSYVRPCVLVRICDECNYGSYQGRCVICGQPGISDAYYCKECTQQEKDRDGCPKIVNLGSSKTDLF 99 
                 89************************************************************************************************* PP

        PHF5 100 yekkk 104
                 ye+kk
  KOO25120.1 100 YERKK 104
                 **997 PP

>> PolC_DP2  DNA polymerase II large subunit DP2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   9.8   1.2e-05     0.056     616     663 ..      41      90 ..      11     105 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 1.2e-05
    PolC_DP2 616 iarrkCkkCgketlearCeeCgek.teeklvCkkceeeve.eekcekcek 663
                 +  r C++C+  +++ rC  Cg+  ++  ++Ck+c+++++ ++ c+k  +
  KOO25120.1  41 VLVRICDECNYGSYQGRCVICGQPgISDAYYCKECTQQEKdRDGCPKIVN 90 
                 67899*****************98356789*******8885777999765 PP

>> C1_2  C1 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.3  11.3         4   1.8e+04      16      40 ..      25      51 ..       3      55 .. 0.72
   2 ?   13.4   3.6   1.6e-05     0.074      18      38 ..      55      75 ..      51      78 .. 0.85

  Alignments for each domain:
  == domain 1  score: -4.3 bits;  conditional E-value: 4
        C1_2 16 sesfnCsaCgrkidgff..YsCseCdf 40
                + +++C +C+  + +     +C+eC++
  KOO25120.1 25 KCDGKCPVCDSYVRPCVlvRICDECNY 51
                556789999988665557789999998 PP

  == domain 2  score: 13.4 bits;  conditional E-value: 1.6e-05
        C1_2 18 sfnCsaCgrkidgffYsCseC 38
                +++C +Cg+++ ++ Y+C+eC
  KOO25120.1 55 QGRCVICGQPGISDAYYCKEC 75
                579*******76788****** PP

>> DZR  Double zinc ribbon
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.5  18.1     0.016        71       1      49 []      30      76 ..       4      76 .. 0.80
   2 ?   10.7   3.2   9.5e-05      0.43       1      23 [.      58      80 ..      58      87 .. 0.78

  Alignments for each domain:
  == domain 1  score: 3.5 bits;  conditional E-value: 0.016
         DZR  1 CpqCgeelppda..rfCseCgtklkavaaedrCpsCgekvdpearfCpeCG 49
                Cp C + ++p    r C+eC+        + rC+ Cg++  ++a +C+eC+
  KOO25120.1 30 CPVCDSYVRPCVlvRICDECNYGSY----QGRCVICGQPGISDAYYCKECT 76
                6666666666542247777776655....8********************6 PP

  == domain 2  score: 10.7 bits;  conditional E-value: 9.5e-05
         DZR  1 CpqCgeelppdarfCseCgtklk 23
                C  Cg++  +da +C+eC ++ k
  KOO25120.1 58 CVICGQPGISDAYYCKECTQQEK 80
                88899999999999999998865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (110 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       731  (0.0407719); expected 358.6 (0.02)
Passed bias filter:                      209  (0.0116571); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.39u 0.23s 00:00:00.62 Elapsed: 00:00:00.39
# Mc/sec: 849.94
//
Query:       KOO25121.1  [L=419]
Description: glycoside hydrolase family 6 protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.2e-63  215.7   0.0    1.2e-62  212.4   0.0    2.2  1  Glyco_hydro_6  Glycosyl hydrolases family 6
  ------ inclusion threshold ------
       0.16   12.4   2.7       0.51   10.8   0.4    2.4  2  UPF0506        UPF0506


Domain annotation for each model (and alignments):
>> Glyco_hydro_6  Glycosyl hydrolases family 6
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  212.4   0.0   1.3e-66   1.2e-62      22     298 ..       3     345 ..       1     351 [. 0.85

  Alignments for each domain:
  == domain 1  score: 212.4 bits;  conditional E-value: 1.3e-66
  Glyco_hydro_6  22 akvakvptavWldriaki..eelrkaldeavaqakaeg..avvvlVvYnlPgRDCaaqaSaGela........saaa.lekYk.eyidaiaagigk 103
                    ++++++p+a W+d+  ki  ++  ++l+ ++++a++++   + v++ Y+lP+RDC+a+aS+Ge++        +++a l+ Y+ +y+d+++a +g+
     KOO25121.1   3 EQMKTIPSAFWIDNYGKIrgSNRLDTLEGILQDAASKSdpPLCVFIFYDLPNRDCNAKASNGEISfgeqdvaeASEAaLAIYRtRYVDPFVAVLGE 98 
                    7899**********99994434557788888887777768999*******************9862222222223345899*************** PP

  Glyco_hydro_6 104 ysdlravvvlEpDslanlvtnlsvekCaeaaaaaerlaglayAvkkLkalpn...............vavYlDaghsgwlgWeknleeaaellakv 184
                    y+ + +v+v+EpDsl+n+++n+ +++C++a+ a +++ g++yAv++L+                   +a+Y+Da+h+gw+g e n++  ++l+ + 
     KOO25121.1  99 YPRVPVVIVIEPDSLGNVISNAGQHSCTAATVA-TYKLGVRYAVDALSGARGhlaaggtvgasmgapIALYVDAAHGGWMGFEPNAQAFVSLMIE- 192
                    ***************************988877.9***********986432222222223333333799*******999997777777777777. PP

  Glyco_hydro_6 185 vkaaagvakvdGfalnvsnynateea...........................................teanksvdekkYakalskalvaaglpa 237
                        + ++k++Gf +nv+ny+++ e                                               +    e +Y+++l++++v ++  +
     KOO25121.1 193 ---IGILDKIRGFTTNVANYQPLGEGalcpaeayeragemlhgavlgvadwckkhvdhacctedpcevlGLGSGGSTELSYVQSLQQHFVMRTGWQ 285
                    ...899*****************9779**************************************999877788899************9877654 PP

  Glyco_hydro_6 238 lahfviDtsRnGkqgkerkdageWCNppgrglGerpttstgdp.lvdaylWvKppGeSDGtc 298
                      hfviDt+RnG++++ r++  +WCN +g+g G+ pt++tg p +vda+ W K+pGeSDG +
     KOO25121.1 286 -PHFVIDTGRNGRPHA-RSSCRSWCNINGAGAGHVPTMNTGLPsVVDAFYWLKTPGESDGCT 345
                    .5************88.9999*******************975278**************65 PP

>> UPF0506  UPF0506
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.4   5.7e-05      0.51       5      30 ..     238     263 ..     235     272 .. 0.89
   2 ?    0.9   0.1      0.07   6.3e+02      32      50 ..     344     362 ..     335     368 .. 0.76

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 5.7e-05
     UPF0506   5 geeCsktvfkrCCgdlvCklkspfeG 30 
                  ++C+k v + CC +  C++ +  +G
  KOO25121.1 238 ADWCKKHVDHACCTEDPCEVLGLGSG 263
                 679*****************999888 PP

  == domain 2  score: 0.9 bits;  conditional E-value: 0.07
     UPF0506  32 CveCleseefClrdseCCs 50 
                 C + l+s+++C+r +  C+
  KOO25121.1 344 CTRLLPSGQSCARFDSDCE 362
                 9999999999998655555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (419 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       433  (0.0241508); expected 358.6 (0.02)
Passed bias filter:                      343  (0.019131); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.50u 0.22s 00:00:00.72 Elapsed: 00:00:00.39
# Mc/sec: 3210.54
//
Query:       KOO25122.1  [L=271]
Description: hypothetical protein Ctob_006767 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.5e-12   47.1   8.4    3.4e-05   23.7   0.1    5.2  5  Arm       Armadillo/beta-catenin-like repeat
     0.0033   17.9  12.6       0.04   14.4   4.3    2.9  3  HEAT_EZ   HEAT-like repeat
  ------ inclusion threshold ------
      0.041   14.3  10.1        3.2    8.2   0.1    3.5  4  HEAT_2    HEAT repeats


Domain annotation for each model (and alignments):
>> Arm  Armadillo/beta-catenin-like repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.0   0.0    0.0095        57      13      40 ..      37      64 ..      32      65 .. 0.88
   2 ?    1.9   0.0     0.043   2.5e+02       2      25 ..      74      97 ..      74     104 .. 0.84
   3 !    6.8   1.6    0.0012       7.3      29      41 .]     113     125 ..     107     125 .. 0.93
   4 !   23.7   0.1   5.7e-09   3.4e-05       2      41 .]     127     167 ..     126     167 .. 0.95
   5 !   11.5   0.0   4.1e-05      0.24       2      23 ..     167     193 ..     166     202 .. 0.80

  Alignments for each domain:
  == domain 1  score: 4.0 bits;  conditional E-value: 0.0095
                HHHHHHHHTTTSSHHHHHHHHHHHHHHT CS
         Arm 13 avppLvrLLssedeevqeeAawALsNLa 40
                 vp Lv++ s++ +  + +Aa+AL+ L+
  KOO25122.1 37 FVPTLVKMASTGRPAEKLAAARALTLLT 64
                59*************9********9887 PP

  == domain 2  score: 1.9 bits;  conditional E-value: 0.043
                HHHHHHHHHTTHHHHHHHHTTTSS CS
         Arm  2 senkdavieaGavppLvrLLssed 25
                +en+  +++a + ++L+++Ls  d
  KOO25122.1 74 NENRTSIVSAKGHKALLAMLSEND 97
                6899999999999*******9444 PP

  == domain 3  score: 6.8 bits;  conditional E-value: 0.0012
                 HHHHHHHHHHHTT CS
         Arm  29 qeeAawALsNLaa 41 
                 +e+Aa+AL+NL+a
  KOO25122.1 113 REAAAAALANLCA 125
                 699*********7 PP

  == domain 4  score: 23.7 bits;  conditional E-value: 5.7e-09
                 HHHHHHHHHTTHHHHHHHHTT.TSSHHHHHHHHHHHHHHTT CS
         Arm   2 senkdavieaGavppLvrLLs.sedeevqeeAawALsNLaa 41 
                  + ++av+ a ++ +Lv+ L   e ee+++ +++AL+NLa+
  KOO25122.1 127 ADGREAVVGASGITVLVAALVrEEAEELLKYCCGALGNLAS 167
                 5789***********************************96 PP

  == domain 5  score: 11.5 bits;  conditional E-value: 4.1e-05
                 HHHHHHHHHTTHHHHHHHHTT.....T CS
         Arm   2 senkdavieaGavppLvrLLs.....s 23 
                 sen da+  aG++++L++L +      
  KOO25122.1 167 SENQDAIAAAGGIEALISLAKavgikE 193
                 79*****************88555444 PP

>> HEAT_EZ  HEAT-like repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.6   0.1   0.00046       2.7      22      53 ..      30      61 ..      23      63 .. 0.85
   2 ?   -3.3   0.1       2.4   1.4e+04      32      41 ..      88      96 ..      87     104 .. 0.53
   3 !   14.4   4.3   6.7e-06      0.04       4      55 .]     113     165 ..     112     165 .. 0.83

  Alignments for each domain:
  == domain 1  score: 8.6 bits;  conditional E-value: 0.00046
     HEAT_EZ 22 lqplvpeilpaLlalLnddsdeVRaaAagaLg 53
                ++   p  +p L+++ ++  ++ + aAa+aL+
  KOO25122.1 30 VKMRRPSFVPTLVKMASTGRPAEKLAAARALT 61
                55556899***********************7 PP

  == domain 2  score: -3.3 bits;  conditional E-value: 2.4
     HEAT_EZ 32 aLlalLndds 41
                aLla+L+  +
  KOO25122.1 88 ALLAMLSE-N 96
                57777732.2 PP

  == domain 3  score: 14.4 bits;  conditional E-value: 6.7e-06
     HEAT_EZ   4 RraAawaLGr....laggepellqplvpeilpaLlalLnddsd..eVRaaAagaLgnl 55 
                 R+aAa+aL++    + g e+   +  ++++++aL+      +   e  ++++gaLgnl
  KOO25122.1 113 REAAAAALANlcasADGREAVVGASGITVLVAALV-----REEaeELLKYCCGALGNL 165
                 9*********776555555555888999*******.....9998788*********97 PP

>> HEAT_2  HEAT repeats
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.2   0.1   0.00054       3.2      26      61 ..      31      66 ..      25      75 .. 0.86
   2 ?    5.8   1.8     0.003        18      31      75 ..      84     128 ..      73     137 .. 0.84
   3 ?    4.3   0.1    0.0089        53       2      40 ..     140     186 ..     139     195 .. 0.76
   4 ?   -2.7   0.0       1.4   8.3e+03      66      73 ..     220     227 ..     206     243 .. 0.50

  Alignments for each domain:
  == domain 1  score: 8.2 bits;  conditional E-value: 0.00054
      HEAT_2 26 rignpealpaLvellededpavRraaaeaLgaigdp 61
                +++ p+ +p+Lv+++++  pa   aaa+aL  + ++
  KOO25122.1 31 KMRRPSFVPTLVKMASTGRPAEKLAAARALTLLTSE 66
                5788999***********************877665 PP

  == domain 2  score: 5.8 bits;  conditional E-value: 0.003
      HEAT_2  31 ealpaLvellededpavRraaaeaLgaigdpealpaLkelldddd 75 
                 +  +aL+ +l+  d+    aa ++ + +++++a++aL+ l+++ d
  KOO25122.1  84 KGHKALLAMLSENDSLANLAAPDTTVFLAREAAAAALANLCASAD 128
                 5678999***********************999999999998755 PP

  == domain 3  score: 4.3 bits;  conditional E-value: 0.0089
      HEAT_2   2 daLlqalendpdpevrraairaLgrignp..ea......lpaLvell 40 
                  +L++al++ + +e+ +  + aLg+++++  +a      ++aL++l+
  KOO25122.1 140 TVLVAALVREEAEELLKYCCGALGNLASEnqDAiaaaggIEALISLA 186
                 579999*9****************88765444433334477777766 PP

  == domain 4  score: -2.7 bits;  conditional E-value: 1.4
      HEAT_2  66 aLkelldd 73 
                 aL++l+ d
  KOO25122.1 220 ALRKLAID 227
                 33333332 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (271 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       465  (0.0259356); expected 358.6 (0.02)
Passed bias filter:                      328  (0.0182944); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.43u 0.20s 00:00:00.63 Elapsed: 00:00:00.36
# Mc/sec: 2237.90
//
Query:       KOO25123.1  [L=444]
Description: xyloglucan galactosyltransferase katamari1-like protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.4e-19   69.7   1.1    6.9e-19   68.2   1.1    1.6  1  Exostosin  Exostosin family


Domain annotation for each model (and alignments):
>> Exostosin  Exostosin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   68.2   1.1   3.9e-23   6.9e-19       6     282 ..      47     364 ..      44     370 .. 0.74

  Alignments for each domain:
  == domain 1  score: 68.2 bits;  conditional E-value: 3.9e-23
   Exostosin   6 kVYvydlpskfnedlleecrelp......................etswysaeqfllesllhsrveeyvrtsdpaeAdlffvpfyaslsenrhllnsal 82 
                 +V+vydl + f+   l + +                         +t+ y a + l     hs+    +r+++p++Ad+f+vp++++ ++n   ++   
  KOO25123.1  47 RVFVYDLVPPFSDYNLSNASLHDiigrptgcsghqhtitcssfvwDTNHYGAANMLAWRVYHSPK---YRVFSPEDADIFLVPVITNPKRNYLIDAA-- 140
                 89***96666666655555444479*************996666655555555555555555552...*******************9999955554.. PP

   Exostosin  83 qdrrelqrellew.lksqlpyWnrsgGrdHfivlsrptwafrr.....takdvdwgsamlvnltslfseeqyr.....................pgkdv 154
                       +r+++e+ +k+qlp+ n +  + H++ +s+ +    +     + +     +a+ +   s ++ e yr                     p + +
  KOO25123.1 141 ------CRAIAEFdMKAQLPHLNGRTAHKHLFAISKEHPVAINctqwwSMPTGLLARAIRL-SYSEIQPEEYRpdeydylkffhtlfrepnflyP-NLF 231
                 ......4444443255666999999999999988887543333345888888888888888.566666677777777777777777777777543.349 PP

   Exostosin 155 vvPypspfhp..........eisqwqaaspsnrRktllvFagelrrrsesgkireklleeckgdpdadickgkqctkgrskedylellassrFClvppG 243
                 ++Py+s++h           +     + +  ++R++l+ F g++   +    +r +l e c++   ++ic + + +++    + l l ++++FCl ppG
  KOO25123.1 232 SMPYLSSVHWlpestasastTAALTPPWAAGETRPILMLFLGAV--NHGDILVRTRLSEMCGSYHNKSICTHARYDAN----KTLLLKRKATFCLEPPG 324
                 99*****9999999887765555555567789***********6..788999*********88888888888776653....25667789********* PP

   Exostosin 244 dsptsrrlfdallagCIPViisdqielPfedvl.dwrefs 282
                 d+p +r++ d +++gCIPV+++      ++ +   wre+s
  KOO25123.1 325 DTPYRRSFTDDIALGCIPVLFNRMQNHAYSWMWdGWREAS 364
                 *********************7777777766663466666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (444 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       275  (0.0153383); expected 358.6 (0.02)
Passed bias filter:                      252  (0.0140554); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.27s 00:00:00.75 Elapsed: 00:00:00.43
# Mc/sec: 3097.64
//
Query:       KOO25124.1  [L=107]
Description: hypothetical protein Ctob_006772 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (107 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       220  (0.0122706); expected 358.6 (0.02)
Passed bias filter:                      115  (0.00641419); expected 358.6 (0.02)
Passed Vit filter:                         6  (0.000334653); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.24s 00:00:00.58 Elapsed: 00:00:00.39
# Mc/sec: 829.34
//
Query:       KOO25125.1  [L=465]
Description: molybdopterin biosynthesis protein cnx1-like protein, partial [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.6e-38  131.3   4.2    4.1e-38  130.6   4.2    1.3  1  MoeA_N         MoeA N-terminal region (domain I and II)
    7.8e-20   71.0   0.0    1.3e-19   70.3   0.0    1.4  1  MoCF_biosynth  Probable molybdopterin binding domain
    1.2e-14   54.2   0.1    3.1e-14   52.9   0.1    1.8  1  MoeA_C         MoeA C-terminal region (domain IV)


Domain annotation for each model (and alignments):
>> MoeA_N  MoeA N-terminal region (domain I and II)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  130.6   4.2   6.9e-42   4.1e-38       1     157 []       7     168 ..       7     168 .. 0.88

  Alignments for each domain:
  == domain 1  score: 130.6 bits;  conditional E-value: 6.9e-42
                 B-HHHHHHHHHHH-.HH-EEEEEGGCG-TT-BBSS-EE-SS-BSSS-EESSSEEEEEEBTTB--.............-S---TT-.EEEE-TTSB--TT CS
      MoeA_N   1 lsveealaiilaal.eleeeevplaaealgrvlaedvvApedvPpfdnSamDGYAvraeagsgaseeep..saageeperllpgg.avrimTGaplPeg 95 
                 lsveea +i+la++  l++e++ l ++ lgr+laedv Ap++ Ppf +++ DGYAvra++gs+++ +    +a++++++++l++g a++i+TGaplP+g
  KOO25125.1   7 LSVEEAAEIVLAEVrSLPTERCGL-RDVLGRRLAEDVFAPRPHPPFPAAIKDGYAVRAADGSAERVVVSeiRAGDAAAQPELASGqATYITTGAPLPPG 104
                 59************7777777***.99************************************98888799666677777777777************* PP

                 --EEEEGGGE.E.....EETTE...S--STTTTEE-TTSSB-TTSEEE-TTBB--CCCHHHHHHCT CS
      MoeA_N  96 adaVvpvEdteeee.aketvev...kavkpgenvrraGedikaGevllragtrltpaeigllasvG 157
                 adaV+ +E+++ e  ++++      +a+k+g+ vr +G+d++ G+++l+a + l++ae+gll  +G
  KOO25125.1 105 ADAVIGIEEVR-EVgTRRIA-LtsaAAPKAGQEVRAVGSDMADGALVLSASDLLGAAEVGLLGGLG 168
                 **********6.33233322.2578999*********************************97665 PP

>> MoCF_biosynth  Probable molybdopterin binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.3   0.0   2.1e-23   1.3e-19       1     143 [.     181     341 ..     181     342 .. 0.92

  Alignments for each domain:
  == domain 1  score: 70.3 bits;  conditional E-value: 2.1e-23
                    EEEEE-HHHH.................TTSSGBHHHHHHHHHHHTTSEEEEEEEEE-SSHHHHHHHH.HHHHHTSSEEEEESS-SSSTT--HHHHH CS
  MoCF_biosynth   1 avitvGdell.................sgkieDtngpllaellkelgvevskytvvpDdeeeikeal.laaleeadviittGGtGptpdDvtpeal 78 
                    av+++Gdell                 +gki D+n p+l +l ++ g+++ ++++  D    ++++l +a ++++dv++++GG++++++D+ +  l
     KOO25125.1 181 AVLSTGDELLdalagsagspedgerraTGKIFDSNRPMLLALSAAEGARTLDLGLSSDVAGVLEAKLeAALAADVDVLVCSGGVSMGDRDLIKPLL 276
                    79*****************************************************************65555666********************* PP

                    HHHHSEE-HHHHHHHHHHHHHHCCTTSHGGGGGGE.EE.....TTE..EEEE-SSHHHHHHHHHHHHHGGHH CS
  MoCF_biosynth  79 aklfekelegfeeafrrvslkpgkpvgvapgailsrav.....gkt..iigLPGspkavkealeeillpale 143
                    ++ ++        +f  v +kpgkp+++a++    ++      +++  ++gLPG+p+++ +++++++ p+l+
     KOO25125.1 277 KARGT-------FHFGTVVMKPGKPLTFATLPRSPSSGgggtaRAPllVFGLPGNPVSAYACFHLVVAPTLR 341
                    99999.......9**************99996554444999986668799*******************998 PP

>> MoeA_C  MoeA C-terminal region (domain IV)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.9   0.1   5.2e-18   3.1e-14       2      59 ..     356     413 ..     355     425 .. 0.92

  Alignments for each domain:
  == domain 1  score: 52.9 bits;  conditional E-value: 5.2e-18
                 EEESS-EE--SSS-EEEEEEEES-S-EEEEEE-S---TT-GGGCTT--EEEEE-TT-- CS
      MoeA_C   2 arlaedlksdpgrreflRvilteedgeyvaeptgkqgSglLsslaeAnglivipegte 59 
                 arl+ +++ d+ r+e++Rv+lt+   ++va++tg q S++L+s +++++l+++p+g++
  KOO25125.1 356 ARLGVPITPDAERPEYHRVVLTSTRDGLVATSTGRQISSRLASCRGSDALVEVPAGGA 413
                 89********************999999***************************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (465 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       254  (0.014167); expected 358.6 (0.02)
Passed bias filter:                      193  (0.0107647); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.48u 0.23s 00:00:00.71 Elapsed: 00:00:00.41
# Mc/sec: 3434.86
//
Query:       KOO25126.1  [L=227]
Description: tRNA (guanine-n -)-methyltransferase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.5e-38  131.9   0.0    1.9e-38  131.7   0.0    1.1  1  Methyltransf_4   Putative methyltransferase
    4.8e-06   26.4   0.3    8.7e-06   25.6   0.3    1.3  1  Methyltransf_31  Methyltransferase domain
    9.3e-06   26.3   0.3      5e-05   23.9   0.3    2.0  1  Methyltransf_25  Methyltransferase domain
    9.5e-05   22.3   0.0     0.0014   18.5   0.0    2.1  1  Methyltransf_23  Methyltransferase domain
    0.00016   22.2   0.1      0.038   14.6   0.0    2.3  2  Methyltransf_11  Methyltransferase domain
  ------ inclusion threshold ------
      0.015   16.0   0.1       0.26   12.1   0.0    2.2  2  Methyltransf_12  Methyltransferase domain
      0.027   14.0   0.3       0.18   11.3   0.3    1.9  1  MTS              Methyltransferase small domain
      0.058   13.3   0.0        0.1   12.6   0.0    1.3  1  Methyltransf_18  Methyltransferase domain
      0.062   13.3   0.0      0.084   12.9   0.0    1.2  1  Methyltransf_32  Methyltransferase domain


Domain annotation for each model (and alignments):
>> Methyltransf_4  Putative methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  131.7   0.0   9.4e-42   1.9e-38       3     173 .]      43     221 ..      41     221 .. 0.89

  Alignments for each domain:
  == domain 1  score: 131.7 bits;  conditional E-value: 9.4e-42
                     EEEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHCTTSSEEEEES-CCCHHHHCS....-TTSEEEEEEES-----SGGGGGGS CS
  Methyltransf_4   3 pvvleiGcGkGeflvalAkknPdknflGiEirvkvvakvlkkiealelkNlrilrgdalkvllell....edgslekifilFPDPwfKkrhhKrR 93 
                     p++++iGc++G f ++lA   ++ n+lG+Eir  + +++ + +++ +l+N + l  +a + l e+l    +   l+ ++i+FPDPwfK +hhKrR
      KOO25126.1  43 PLHVDIGCARGLFCLDLASSSAEANVLGLEIRAALADAATEDAQRFGLHNAAFLACNANTNLDEILrlatPCTPLRSVSIQFPDPWFKSKHHKRR 137
                     89********************************************************6666666511114567********************* PP

                     TTSHHHHHHHHHHEEEEEEEEEEESHHHHHHHHHHHHHCSTTE....EESSCCCSCCTCHCHHCCCSSTTCCCCCCTTSS-EEE CS
  Methyltransf_4  94 llqpellkelarvLkkgGvlelaTDveeyaeemlkvleeeplf....erlskeeeleeeplsvlriatkyeqkvqskgkeiyel 173
                     ++qp l+ ++ar L +gG l +++Dv +++e + +v+++ +      +r s++++l+++p   l+++t++e++ +++g++iy++
      KOO25126.1 138 VVQPDLVRAIARHLPPGGWLFFQSDVLDLSEGARHVIRSVEGTglrdVRESETDWLAPKPDALLHVSTERERASEALGRPIYRA 221
                     *************************99999988888776643322227889999***************************985 PP

>> Methyltransf_31  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.6   0.3   4.3e-09   8.7e-06       8      67 ..      46     105 ..      45     111 .. 0.91

  Alignments for each domain:
  == domain 1  score: 25.6 bits;  conditional E-value: 4.3e-09
  Methyltransf_31   8 lDlGCGtGeltfelaeelgpkaevvGiDiseeaielArenaqklgldnveFeqgdiee.le 67 
                      +D+GC+ G +++ la+    +a+v G++i +     A+e aq+ gl n+ F ++++++ l+
       KOO25126.1  46 VDIGCARGLFCLDLAS-SSAEANVLGLEIRAALADAATEDAQRFGLHNAAFLACNANTnLD 105
                      6**************5.556899*******************************9988776 PP

>> Methyltransf_25  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.9   0.3   2.5e-08     5e-05       2      97 .]      46     155 ..      46     155 .. 0.71

  Alignments for each domain:
  == domain 1  score: 23.9 bits;  conditional E-value: 2.5e-08
                      EEET-TTSHHHHHHHCTSTSSEEEEEESSHHHHHHHHHHHHHTTT.TEEEEESBC.CGBS......SSTTTEEEEEE.....EST.GGGSSHHH CS
  Methyltransf_25   2 LdlGcGtGrltlalakrlgkakvtgvDiseemleaareraeeegl.nvefvqgda.edlp......fedgsfDlvvs.....sga.lhhlsded 81 
                      +d+Gc +G ++l+la    +a+v+g++i +++ +aa e a++ gl n+ f+ ++a ++l+       +      v +     ++   hh  +  
       KOO25126.1  46 VDIGCARGLFCLDLASSSAEANVLGLEIRAALADAATEDAQRFGLhNAAFLACNAnTNLDeilrlaTPCTPLRSVSIqfpdpWFKsKHHKRRVV 139
                      69**************9769*********************99999****99999544542222222333333333333355444455655556 PP

                      HHHHHHHHHHHEEEEE CS
  Methyltransf_25  82 lekalkeiarvLkpgG 97 
                      ++++++ iar+L pgG
       KOO25126.1 140 QPDLVRAIARHLPPGG 155
                      6778888888888887 PP

>> Methyltransf_23  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.5   0.0     7e-07    0.0014      13     138 ..      33     197 ..      21     214 .. 0.70

  Alignments for each domain:
  == domain 1  score: 18.5 bits;  conditional E-value: 7e-07
  Methyltransf_23  13 lerllpklraggrvLdiGcGtGillevlrengf..svtgvDlspeaveiaekakkaqkdqfdeqeaaepqg...................kfdl 85 
                       erl++ +++    +diGc+ G ++  l+   +  +v g +++ ++ + a + + +++  +++ + a++++                   ++++
       KOO25126.1  33 PERLFA-RPELPLHVDIGCARGLFCLDLASSSAeaNVLGLEIRAALADAA-TEDAQRFGLHNAAFLACNANtnldeilrlatpctplrsvSIQF 124
                      567776.66666778***********9988876669******87766655.8899999999899999988888888888877777666665555 PP

  Methyltransf_23  86 Ivlrevlehvp...dppellrqiatllkpgGylllseplasl.................kedrllldwlylvp 138
                         ++   h +     p l+r ia++l pgG+l+++    +l                   +++  dwl++ p
       KOO25126.1 125 PDPWFKSKHHKrrvVQPDLVRAIARHLPPGGWLFFQSDVLDLsegarhvirsvegtglrDVRESETDWLAPKP 197
                      55555444444233366******************98655555556655555555555445555555555555 PP

>> Methyltransf_11  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.6   0.0   1.9e-05     0.038       1      52 [.      46     100 ..      46     109 .. 0.84
   2 ?    5.4   0.0     0.014        29      78      96 .]     141     159 ..     130     159 .. 0.88

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 1.9e-05
                      EEET-TTSHHHHHHHHTT..SEEEEEES-HHHHHHHHHHCCHHT-.EEEETTEEC CS
  Methyltransf_11   1 LdvGcGtGrlaealakrg..arvvgvDlskemlklakekaseegl.kvefvvada 52 
                      +d+Gc +G+++ +la+    a+v+g+++ +++ ++a e a++ gl +  f+ ++a
       KOO25126.1  46 VDIGCARGLFCLDLASSSaeANVLGLEIRAALADAATEDAQRFGLhNAAFLACNA 100
                      59*************66668****************9999988876656666555 PP

  == domain 2  score: 5.4 bits;  conditional E-value: 0.014
                      HHHHHHHHHHEEEEEEEEE CS
  Methyltransf_11  78 ekalkeiaRvLkpgGllvi 96 
                       ++++ iaR L pgG+l++
       KOO25126.1 141 PDLVRAIARHLPPGGWLFF 159
                      57899***********997 PP

>> Methyltransf_12  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   0.00013      0.26       1      56 [.      46     101 ..      46     121 .. 0.84
   2 ?    1.6   0.0      0.23   4.6e+02      84      99 .]     142     157 ..     129     157 .. 0.81

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 0.00013
  Methyltransf_12   1 LeiGcGtGsllralleklpdieytgvDispsaiedakeklakrennnnnnveleal 56 
                      ++iGc  G +   l+ +  +++++g++i ++  ++a e  ++ + +n++++  +a+
       KOO25126.1  46 VDIGCARGLFCLDLASSSAEANVLGLEIRAALADAATEDAQRFGLHNAAFLACNAN 101
                      69*******************************77777777777777666665554 PP

  == domain 2  score: 1.6 bits;  conditional E-value: 0.23
  Methyltransf_12  84 evldnirklLkpgGrl 99 
                      ++++ i+++L pgG+l
       KOO25126.1 142 DLVRAIARHLPPGGWL 157
                      7899**********97 PP

>> MTS  Methyltransferase small domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.3   9.2e-05      0.18      36     136 ..      46     158 ..      37     177 .. 0.75

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 9.2e-05
                 EEET-TTSHHHHHHHHHTTC.EEEEEESBHHHHHHHHHHHHHTTGC.EEEEE-STTTTSTT...........S-EEEEEE---STTTCHCHHHHHHHHH CS
         MTS  36 lDlGcGaGvlgaalakespeaevtlvdvdarAlesakenleankle.vevvasdvleevee...........kkfdlivsNPPfhagkatelavaeeli 122
                 +D+Gc  G+  + la+ s ea+v  +++ a+  ++a+e +++ +l+ + ++a+++  +++e           +++ +    P f+++++++  v  +l+
  KOO25126.1  46 VDIGCARGLFCLDLASSSAEANVLGLEIRAALADAATEDAQRFGLHnAAFLACNANTNLDEilrlatpctplRSVSIQFPDPWFKSKHHKRRVVQPDLV 144
                 8****************************9999999999999999987777777776665322222222222344444556666666666666666777 PP

                 HHHHHHEEEEEEEE CS
         MTS 123 aeAkeaLkegGeLl 136
                 ++ +++L +gG L+
  KOO25126.1 145 RAIARHLPPGGWLF 158
                 77777777777665 PP

>> Methyltransf_18  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0     5e-05       0.1      18      69 ..      45      96 ..      38     107 .. 0.90

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 5e-05
  Methyltransf_18 18 vaDiGtDHgylpiylvkegkakkviasDinegplekakeniekagledkiev 69
                      +DiG+  g+  + l++++   +v+  +i++   ++a e++++ gl++   +
       KOO25126.1 45 HVDIGCARGLFCLDLASSSAEANVLGLEIRAALADAATEDAQRFGLHNAAFL 96
                     68*******************************************9886655 PP

>> Methyltransf_32  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   4.2e-05     0.084      30      82 ..      46      93 ..      34     142 .. 0.84

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 4.2e-05
  Methyltransf_32 30 vDvGaGkgYLsfvlalkekeyklkvvgidakeelvekaekraeklgkkfnkrl 82
                     vD+G+ +g     la+  +  + +v+g++++++l+++a + a+++g +     
       KOO25126.1 46 VDIGCARGLFCLDLAS--SSAEANVLGLEIRAALADAATEDAQRFGLHN---A 93
                     9*******99999999..4478***********************9443...3 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (227 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       286  (0.0159518); expected 358.6 (0.02)
Passed bias filter:                      263  (0.014669); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.42u 0.24s 00:00:00.65 Elapsed: 00:00:00.39
# Mc/sec: 1725.56
//
Query:       KOO25127.1  [L=226]
Description: hypothetical protein Ctob_006771 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    7.4e-07   29.0  10.5    3.2e-06   26.9  10.5    1.9  1  Orai-1    Mediator of CRAC channel activity
  ------ inclusion threshold ------
        0.5   10.5   3.4        1.1    9.3   0.2    2.1  2  DUF1290   Protein of unknown function (DUF1290)


Domain annotation for each model (and alignments):
>> Orai-1  Mediator of CRAC channel activity
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.9  10.5   3.6e-10   3.2e-06       4     167 ..      20     167 ..      17     174 .. 0.69

  Alignments for each domain:
  == domain 1  score: 26.9 bits;  conditional E-value: 3.6e-10
      Orai-1   4 lnrrklelsrakLkassrtsALlsgFamvamvelqlkeseekeeeisealliafsvvtavlvavhllallistliLpnieavskienledeeveesphe 102
                 l  ++l l+++   a++ +sA l+gFam  + e++l+++   +   ++a l +f  vt+v   +  +a  + +++  +    +k  + +d +++++  +
  KOO25127.1  20 LREKELTLFNENFNAVGTQSAVLAGFAMTSFAEIDLPHN---AFYAQKAFLHIFV-VTSVCANLLCTACTTFVSVWGS----GKALRGKDGSMDQAV-D 109
                 567899******************************655...3457788888885.5666555555544444444444....444455555665544.5 PP

      Orai-1 103 kleeyiekaWlfa.talGillFLvevallswvkFlavssaaalvvtailvpvlilfvvfavhfyrk 167
                  +++  e   +f+ +++G++  L++++ ++w+ ++   ++aa+++ +i   ++i+      + +r 
  KOO25127.1 110 GMHD--ERTFIFScFGVGLISTLLSLMSAAWILMT--LEVAAVATLGISWAIFIIM----RQAWRL 167
                 5654..88888884688***************886..4556666666655555543....355655 PP

>> DUF1290  Protein of unknown function (DUF1290)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.9   0.4     0.027   2.5e+02      23      52 ..      52      81 ..      37      90 .. 0.71
   2 ?    9.3   0.2   0.00013       1.1      22      72 ..     102     153 ..      95     164 .. 0.86

  Alignments for each domain:
  == domain 1  score: 1.9 bits;  conditional E-value: 0.027
     DUF1290 23 giraslekkFdekvfisgffsnvllAalLv 52
                 i    +  + +k f+  f++ ++ A lL+
  KOO25127.1 52 EIDLPHNAFYAQKAFLHIFVVTSVCANLLC 81
                555556667888888888888888888876 PP

  == domain 2  score: 9.3 bits;  conditional E-value: 0.00013
     DUF1290  22 GgiraslekkFdekvfisgffsnvllAalLvylGdk.lgvdlylaavvvfgi 72 
                 G++  ++++++de++fi + f+  l+++lL  +    + + l +aav ++gi
  KOO25127.1 102 GSMDQAVDGMHDERTFIFSCFGVGLISTLLSLMSAAwILMTLEVAAVATLGI 153
                 677888999**********************9987725569******99997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (226 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       648  (0.0361426); expected 358.6 (0.02)
Passed bias filter:                      336  (0.0187406); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.39u 0.25s 00:00:00.64 Elapsed: 00:00:00.38
# Mc/sec: 1763.72
//
Query:       KOO25128.1  [L=852]
Description: hypothetical protein Ctob_006768 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    0.00087   19.6   3.7    0.00087   19.6   3.7    6.0  6  ATG16     Autophagy protein 16 (ATG16)


Domain annotation for each model (and alignments):
>> ATG16  Autophagy protein 16 (ATG16)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7  11.3      0.32   5.7e+03      32     138 ..      45     142 ..      35     165 .. 0.68
   2 ?   -0.6  23.6     0.072   1.3e+03      19     143 ..     120     240 ..     104     257 .. 0.71
   3 ?   -5.6  25.5         1   1.8e+04      15     125 ..     163     282 ..     160     295 .. 0.53
   4 ?   -5.5  15.5         1   1.8e+04     106     157 ..     379     434 ..     321     449 .. 0.48
   5 ?   -1.4   0.2      0.13   2.3e+03      18      50 ..     532     564 ..     510     594 .. 0.68
   6 !   19.6   3.7   4.8e-08   0.00087      62     179 ..     690     811 ..     649     813 .. 0.80

  Alignments for each domain:
  == domain 1  score: -2.7 bits;  conditional E-value: 0.32
       ATG16  32 saleaenaklekaaasakssksskksakekeasasqsnskqsakiqsleqklaqlreelaelyksrgelaqrllelneelqkleeklkedeerlaelea 130
                 + l+ae++ l +++a a +     + + +++a+++q     +a  ++ ++++aq+r+  ++   + +  a+ l + n+e ++ ++ + + ++++a l+a
  KOO25128.1  45 RRLQAEAEVLLREMALADA-----QLDARQAAQQDQ----ADAFREQIDELRAQMRSGSSTGMAAAAMAAEELAACNAEAARYRDVIAKLRAQVATLRA 134
                 4566777777777666554.....444444444444....56666777777777777777777777777777777777777777777777777777777 PP

       ATG16 131 eraaletk 138
                 ++++le+ 
  KOO25128.1 135 DKERLEQG 142
                 77777764 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 0.072
       ATG16  19 eliqaynrLldrtsaleaenaklekaaasaks..sksskksakekeasasqsnskqsakiqsleqklaqlreelaelyksrgelaqrllelneelqkle 115
                 ++i+   +L  ++++l+a +++le+ a++++   s  +++  +   ++a   +++ +++ + l+ +la+l +e + l  ++++l +  +++ ee ++ +
  KOO25128.1 120 DVIA---KLRAQVATLRADKERLEQGASASSVppS--KTAAHQAIVDEA--AAKEAATEHTRLHRQLASLEAEKQRLTNANATLRTERNRAREEAAAAR 211
                 4433...4888999999999999665444444332..222222222222..24568889999************************************* PP

       ATG16 116 eklkedeerlaeleaer.aaletklkdre 143
                 e++++  e+l++++a   aa e  +++ e
  KOO25128.1 212 EEARSTGEQLEAARAAEkAADEATCAEVE 240
                 **********9998754044455555554 PP

  == domain 3  score: -5.6 bits;  conditional E-value: 1
       ATG16  15 kafaeliqaynrLldrtsaleaenaklekaaasaks...sksskksakekeasasq......snskqsakiqsleqklaqlreelaelyksrgelaqrl 104
                 +a +e    ++rL  + ++leae+++l +a a+ ++   ++++++ a ++ea+++       ++++++a+ ++ ++  a+l  e  ++  + +  +++l
  KOO25128.1 163 AAAKEAATEHTRLHRQLASLEAEKQRLTNANATLRTernRAREEAAAAREEARSTGeqleaaRAAEKAADEATCAEVEAALGVERDQAVEREELAKEKL 261
                 5667777899*****************777666665443111111222222222223443333333333333333333444445555555555555555 PP

       ATG16 105 lelneelqkleeklkedeerl 125
                 ++++++ + l+++l e++++l
  KOO25128.1 262 RKAQAQCKHLQAQLVERTRQL 282
                 555555555555555555554 PP

  == domain 4  score: -5.5 bits;  conditional E-value: 1
       ATG16 106 elneelqkleeklkedeerlaeleaeraaletklkdreeel....rekeklvqdlq 157
                  ++e+l++++  ++++ +rl++  ae++al+++l+ r+ el    +ek+kl+ +l 
  KOO25128.1 379 VAEEQLDVQKVAAQAMMQRLQARAAECTALQRQLAARAVELvharEEKQKLIGALE 434
                 34455555555555555555555555555555555544444222244444444433 PP

  == domain 5  score: -1.4 bits;  conditional E-value: 0.13
       ATG16  18 aeliqaynrLldrtsaleaenaklekaaasaks 50 
                 a + +ay r l  ++ ++ + akl+ aa+++  
  KOO25128.1 532 ARVQAAYERVLAEVQIQRNRVAKLRLAASRRGD 564
                 445566888888888888888888666555544 PP

  == domain 6  score: 19.6 bits;  conditional E-value: 4.8e-08
       ATG16  62 easasqsnskqsakiqsleqklaqlreelaelyk.......srgelaqrllelneelqkleeklkedeerlaeleaeraaletklkdreeelrekeklv 153
                 eas     ++   +++sl+ +l++lr e a + k       +++ la+r+ e+n++ +++ e ++ ++++ + l+++  a +t+ ++  e +++ ++l+
  KOO25128.1 690 EAS----RAEVLREVASLQHQLSTLRGEKAMADKaaaerqqQCAVLASRVAEANQQRDEQAELAQGRAAEAELLRKQLLAARTASRSAVEGVEDSRRLL 784
                 333....344778888999999999988876655111111156667789999999999999************************************98 PP

       ATG16 154 q.dlqDElsaLqlqlnqaEeklrklek 179
                   + +D+l  ++ ++  + ++lr+le+
  KOO25128.1 785 AaASRDALLNHHATVATITAELRTLEA 811
                 73679*********9999999999985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (852 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2244  (0.12516); expected 358.6 (0.02)
Passed bias filter:                      582  (0.0324614); expected 358.6 (0.02)
Passed Vit filter:                       100  (0.00557756); expected 17.9 (0.001)
Passed Fwd filter:                        44  (0.00245412); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 1.41u 0.36s 00:00:01.77 Elapsed: 00:00:00.57
# Mc/sec: 4495.20
//
Query:       KOO25129.1  [L=246]
Description: coiled-coil domain-containing protein c16orf93-like protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.3e-28   99.4   3.1      2e-28   98.8   3.1    1.3  1  CLAMP     Flagellar C1a complex subunit C1a-32


Domain annotation for each model (and alignments):
>> CLAMP  Flagellar C1a complex subunit C1a-32
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   98.8   3.1   1.1e-32     2e-28       1      95 [.      55     148 ..      55     152 .. 0.94

  Alignments for each domain:
  == domain 1  score: 98.8 bits;  conditional E-value: 1.1e-32
       CLAMP   1 stllFakeqnfsveqtsafltilkkllenliekslenveksfkyfkelllrhsverppesiglFsvdqvkaiieYilttyfrhykLYkylftpkq 95 
                 ++l+Fa+ ++fsve+ts+f++i+k+ +e++ e  l  + ks++++k lll+hsv+rpp+s+g+F++++v+ i+++ l++y+ h+kLY+y+ft k+
  KOO25129.1  55 NALRFARAHSFSVEKTSTFFSIIKRNHEEMAEAFL-PPHKSWEFLKALLLMHSVQRPPHSVGIFTLSEVQLITKFALENYYDHFKLYRYAFTLKH 148
                 5799*****************************55.6688***************************************************9876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (246 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       991  (0.0552736); expected 358.6 (0.02)
Passed bias filter:                      530  (0.029561); expected 358.6 (0.02)
Passed Vit filter:                        50  (0.00278878); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.27s 00:00:00.72 Elapsed: 00:00:00.41
# Mc/sec: 1791.36
//
Query:       KOO25130.1  [L=263]
Description: hypothetical protein Ctob_003819 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0029   17.1   2.9      0.024   14.1   0.1    2.1  2  adh_short  short chain dehydrogenase
     0.0063   16.4   0.1       0.01   15.8   0.1    1.3  1  KR         KR domain
  ------ inclusion threshold ------
       0.19   10.7   0.0       0.26   10.3   0.0    1.2  1  3Beta_HSD  3-beta hydroxysteroid dehydrogenase/isomerase fami


Domain annotation for each model (and alignments):
>> adh_short  short chain dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    3.1   0.6    0.0092        55     146     165 ..     187     206 ..     183     210 .. 0.83
   2 !   14.1   0.1     4e-06     0.024       2      37 ..     213     248 ..     212     255 .. 0.88

  Alignments for each domain:
  == domain 1  score: 3.1 bits;  conditional E-value: 0.0092
                 BHHHHHHHHHHHHHHHHHHH CS
   adh_short 146 vaaYsAsKaavagltrslak 165
                 ++aY+A+Kaa ++ + +la 
  KOO25130.1 187 LTAYAAAKAATRAASPALAL 206
                 689*******9998888775 PP

  == domain 2  score: 14.1 bits;  conditional E-value: 4e-06
                 EEEEESTTSHHHHHHHHHHHHTT-EEEEEESCHHHH CS
   adh_short   2 vvlvtGassGIGraiakelakeGakvvvvdrseekl 37 
                 +v+ tG+++G+G a+ +ela+  a++++v rs +k 
  KOO25130.1 213 TVVLTGGTAGLGIALLDELARHAATIFLVCRSRSKG 248
                 799*************************88887765 PP

>> KR  KR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.1   1.7e-06      0.01       1      35 [.     212     247 ..     212     260 .. 0.75

  Alignments for each domain:
  == domain 1  score: 15.8 bits;  conditional E-value: 1.7e-06
                 SEEEEETTTSHHHHHHHHHHHHHHS-E.EEEE-SS. CS
          KR   1 gtylitGGlGgLGlelarwlaekgarh.lvllsRsa 35 
                 +t+++tGG+ gLG +l + la+++a+  lv+ sRs+
  KOO25130.1 212 ATVVLTGGTAGLGIALLDELARHAATIfLVCRSRSK 247
                 6899*****************998653144445553 PP

>> 3Beta_HSD  3-beta hydroxysteroid dehydrogenase/isomerase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.0   4.3e-05      0.26     181     235 ..       2      53 ..       1      66 [. 0.76

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 4.3e-05
   3Beta_HSD 181 iyGegdkllvpllkqlaklglalfkigdeevlsdrvYvgNvawahilAaralqdp 235
                 ++G+gd+l++  +   + +      +gde+ ++ ++Yv N+a   + Aa +l  +
  KOO25130.1   2 VFGPGDPLVSDDM---LLSDVLPPTVGDEQRTHTPIYVKNLAALLVRAAAELPVD 53 
                 7888888877644...4445556889***********************999543 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (263 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       353  (0.0196888); expected 358.6 (0.02)
Passed bias filter:                      259  (0.0144459); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.42u 0.27s 00:00:00.69 Elapsed: 00:00:00.43
# Mc/sec: 1834.24
//
Query:       KOO25131.1  [L=101]
Description: hypothetical protein Ctob_003832 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (101 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       321  (0.017904); expected 358.6 (0.02)
Passed bias filter:                      204  (0.0113782); expected 358.6 (0.02)
Passed Vit filter:                         8  (0.000446204); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.25s 00:00:00.60 Elapsed: 00:00:00.41
# Mc/sec: 735.39
//
Query:       KOO25132.1  [L=309]
Description: hypothetical protein Ctob_003830 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.4e-23   81.2   0.5    1.9e-10   40.7   0.1    2.4  2  Myb_DNA-binding  Myb-like DNA-binding domain
    1.5e-14   53.9   0.2    4.4e-06   26.8   0.1    2.3  2  Myb_DNA-bind_6   Myb-like DNA-binding domain
     0.0021   17.9   0.0       0.33   10.9   0.0    2.2  2  Myb_DNA-bind_7   Myb DNA-binding like
  ------ inclusion threshold ------
      0.051   13.7   0.2       0.61   10.3   0.0    2.2  2  Death            Death domain


Domain annotation for each model (and alignments):
>> Myb_DNA-binding  Myb-like DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.7   0.1   4.3e-14   1.9e-10       1      45 [.      51      96 ..      51      97 .. 0.96
   2 !   38.6   0.0     2e-13   8.8e-10       3      45 ..     213     255 ..     211     256 .. 0.93

  Alignments for each domain:
  == domain 1  score: 40.7 bits;  conditional E-value: 4.3e-14
                     CSSSBHHHHHHHHHHHHHHTTCHHHHHHHHT.SS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgkWteeEdelLleavkkhGnrWkkIaerlg.gRtekqcrsrwrny 45
                     r++Wt  Edel++e v++ G +W+ Ia+ l+ gR++ ++r+r++++
       KOO25132.1 51 RKEWTIVEDELIVEKVREIGPKWRQIASALQtGRSDDAVRNRYNRL 96
                     789****************************99**********986 PP

  == domain 2  score: 38.6 bits;  conditional E-value: 2e-13
                      SSBHHHHHHHHHHHHHHTTCHHHHHHHHTSS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 kWteeEdelLleavkkhGnrWkkIaerlggRtekqcrsrwrny 45 
                       Wt+ Ed+++ + v+++Gn+W++I  rl+gRt+ ++r+r +++
       KOO25132.1 213 GWTKAEDDIIMNSVAELGNKWNLITPRLPGRTDHAIRNRHHRL 255
                      6*************************************97665 PP

>> Myb_DNA-bind_6  Myb-like DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.8   0.1   9.9e-10   4.4e-06       1      44 [.      54      99 ..      54     123 .. 0.84
   2 !   25.1   0.0   3.5e-09   1.6e-05       1      43 [.     214     255 ..     214     270 .. 0.90

  Alignments for each domain:
  == domain 1  score: 26.8 bits;  conditional E-value: 9.9e-10
  Myb_DNA-bind_6  1 WteeEdeiLlklvekygndWknIaealn.rRtpkqcfdrwknkL..r 44
                    Wt  Ede++++ v++ g +W++Ia+al   R+  ++++r+++ L  +
      KOO25132.1 54 WTIVEDELIVEKVREIGPKWRQIASALQtGRSDDAVRNRYNR-LmeP 99
                    9999***********************558************.6342 PP

  == domain 2  score: 25.1 bits;  conditional E-value: 3.5e-09
  Myb_DNA-bind_6   1 WteeEdeiLlklvekygndWknIaealnrRtpkqcfdrwknkL 43 
                     Wt++Ed+i+ + v + gn+W++I   l+ Rt  ++++r+++ L
      KOO25132.1 214 WTKAEDDIIMNSVAELGNKWNLITPRLPGRTDHAIRNRHHR-L 255
                     ***************************55**********99.4 PP

>> Myb_DNA-bind_7  Myb DNA-binding like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.9   0.0    0.0053        24       7      51 ..      50      95 ..      43     116 .. 0.90
   2 !   10.9   0.0   7.4e-05      0.33       9      59 ..     212     262 ..     205     286 .. 0.82

  Alignments for each domain:
  == domain 1  score: 4.9 bits;  conditional E-value: 0.0053
  Myb_DNA-bind_7  7 ktkkWskeetekFYkaLsqfGtDFsliaklfpk.rtrrqlKlKFkk 51
                    ++k+W+  e e+  + ++++G  +  ia+ ++  r+++ +++++++
      KOO25132.1 50 YRKEWTIVEDELIVEKVREIGPKWRQIASALQTgRSDDAVRNRYNR 95
                    6899*********************999876655**********96 PP

  == domain 2  score: 10.9 bits;  conditional E-value: 7.4e-05
  Myb_DNA-bind_7   9 kkWskeetekFYkaLsqfGtDFsliaklfpkrtrrqlKlKFkkEerknpel 59 
                       W+k+e +   + + ++G  ++li+  +p+rt++ ++++ ++    +++l
      KOO25132.1 212 VGWTKAEDDIIMNSVAELGNKWNLITPRLPGRTDHAIRNRHHRLLTMRQNL 262
                     57*************************************998755555555 PP

>> Death  Death domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.0   0.00014      0.61       6      45 ..      61      99 ..      58     117 .. 0.78
   2 ?    1.1   0.0     0.098   4.4e+02       6      34 ..     221     250 ..     216     287 .. 0.73

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.00014
                HHHCCSTCCSCCHHHHHHHTTSHHHHHHHHHHSSSTHHHH CS
       Death  6 rildhpdplgkdWkelarkLglseeeidriekennslrsq 45
                 i++++ ++g +W+++a+ L+  ++  d +++++n+l ++
  KOO25132.1 61 LIVEKVREIGPKWRQIASALQTGRS-DDAVRNRYNRLMEP 99
                68999***************88888.47888888887776 PP

  == domain 2  score: 1.1 bits;  conditional E-value: 0.098
                 HHHCCSTCCSCCHHHHHHHT.TSHHHHHHH CS
       Death   6 rildhpdplgkdWkelarkL.glseeeidr 34 
                  i++++ +lg++W  +   L g +++ i+ 
  KOO25132.1 221 IIMNSVAELGNKWNLITPRLpGRTDHAIRN 250
                 68899999*****99997776667665543 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (309 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       730  (0.0407162); expected 358.6 (0.02)
Passed bias filter:                      492  (0.0274416); expected 358.6 (0.02)
Passed Vit filter:                        50  (0.00278878); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.48u 0.23s 00:00:00.71 Elapsed: 00:00:00.40
# Mc/sec: 2305.67
//
Query:       KOO25133.1  [L=694]
Description: insulin-degrading enzyme [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.2e-21   76.4   0.1    6.3e-10   39.2   0.0    2.7  3  Peptidase_M16  Insulinase (Peptidase family M16)
  ------ inclusion threshold ------
       0.27   10.0   0.2         16    4.1   0.0    2.1  2  DUF1583        Protein of unknown function (DUF1583)
       0.76    9.9   3.4         46    4.2   0.1    3.5  3  Colicin_Ia     Colicin Ia


Domain annotation for each model (and alignments):
>> Peptidase_M16  Insulinase (Peptidase family M16)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.0      0.93   5.6e+03      90     107 ..     159     176 ..     134     192 .. 0.57
   2 !   34.1   0.0   3.9e-12   2.4e-08       8     122 ..     265     375 ..     261     391 .. 0.89
   3 !   39.2   0.0   1.1e-13   6.3e-10      36     119 ..     422     504 ..     420     537 .. 0.86

  Alignments for each domain:
  == domain 1  score: -2.8 bits;  conditional E-value: 0.93
                    HHHHHHHSBTTSHHHHHH CS
  Peptidase_M16  90 vladvfkaplleesever 107
                    ++  + +ap++   + + 
     KOO25133.1 159 IFDAFSTAPTFATRASSD 176
                    555555555554444333 PP

  == domain 2  score: 34.1 bits;  conditional E-value: 3.9e-12
                    TSSSEEEEEEEES-SGGGSCTTTTTHHHHHHHHTTSBBSSSCH.HHHHHHHHHTTCEEEEEEESSEEEEEEEEEGGGHHHHHHHHHHHHHSBTTSH CS
  Peptidase_M16   8 ppaktsavglvvdaGSryepkdlnGlAHllehmafkgTkkyps.nklaeeleklGgslnAttsrentvYyvevlskdlekaldvladvfkapllee 102
                    +++++ +++++v +GS +e k+++ +A     m+f + ++ p+ ++ +++l++ Gg +nA+ ++ +  +++e+ s+++  +l++l  +f+ap++  
     KOO25133.1 265 TTNTSFSASVKVPTGSYSELKEYPAIA---QDMLFPSDATCPKeDECETFLTSVGGGSNAFVDKIHKDFFFEMVSSNVVPVLERLVAFFIAPTFVT 357
                    466777899*************99988...79**************************************************************88 PP

                    HHHHHHHHHHHHHHHHHCCH CS
  Peptidase_M16 103 severerkvvekeveavdae 122
                     + +   +++++e +++ + 
     KOO25133.1 358 RASSL--DQINREFNKFGKH 375
                    87766..7788887777665 PP

  == domain 3  score: 39.2 bits;  conditional E-value: 1.1e-13
                    HHHHHTTSBBSSSCH.HHHHHHHHHTTCEEEEEEESSEEEEEEEEEGGGHHHHHHHHHHHHHSBTTSHHHHHHHHHHHHHHHHHH CS
  Peptidase_M16  36 llehmafkgTkkyps.nklaeeleklGgslnAttsrentvYyvevlskdlekaldvladvfkaplleesevererkvvekeveav 119
                    l+ehm+f + +k p+ ++++++l++ Gg +nA+ ++ +  +++ v s+++  +l++l  +f+ap++   + +   + v++e++++
     KOO25133.1 422 LCEHMLFPSNAKCPKeDEYETFLTSVGGGSNAFMDKIHKDFFFRVVSSKVVPVLERLVAFFIAPTFVTRASSL--DPVNRERNVL 504
                    8*****************************************************************8776555..5566666655 PP

>> DUF1583  Protein of unknown function (DUF1583)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.1   0.0    0.0026        16      20      52 ..     324     357 ..     322     364 .. 0.84
   2 ?    3.6   0.0    0.0039        23      20      52 ..     456     489 ..     454     504 .. 0.84

  Alignments for each domain:
  == domain 1  score: 4.1 bits;  conditional E-value: 0.0026
     DUF1583  20 drieYeFfydkgkaavhPaldRk.alLidsdgvs 52 
                 d+i  +Ff++  +++v P l+R+ a++i ++ v+
  KOO25133.1 324 DKIHKDFFFEMVSSNVVPVLERLvAFFIAPTFVT 357
                 67999*****************735778777665 PP

  == domain 2  score: 3.6 bits;  conditional E-value: 0.0039
     DUF1583  20 drieYeFfydkgkaavhPaldRk.alLidsdgvs 52 
                 d+i  +Ff++  +++v P l+R+ a++i ++ v+
  KOO25133.1 456 DKIHKDFFFRVVSSKVVPVLERLvAFFIAPTFVT 489
                 68999*****************735788877776 PP

>> Colicin_Ia  Colicin Ia
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.8   0.1     0.045   2.7e+02      33      50 ..     617     634 ..     611     642 .. 0.88
   2 ?    2.1   0.1     0.036   2.2e+02      35      50 ..     644     659 ..     637     663 .. 0.90
   3 ?    4.2   0.1    0.0077        46      33      50 ..     669     686 ..     662     691 .. 0.89

  Alignments for each domain:
  == domain 1  score: 1.8 bits;  conditional E-value: 0.045
                 T-CEEEEEEEEEE-SHHH CS
  Colicin_Ia  33 faGtikittsavidnran 50 
                 ++Gt+ it+s++  n a+
  KOO25133.1 617 YSGTVTITSSSIYGNTAD 634
                 89**********999886 PP

  == domain 2  score: 2.1 bits;  conditional E-value: 0.036
                 CEEEEEEEEEE-SHHH CS
  Colicin_Ia  35 Gtikittsavidnran 50 
                 Gt+ it+s++  nra 
  KOO25133.1 644 GTVTITSSSIYGNRAG 659
                 9*************95 PP

  == domain 3  score: 4.2 bits;  conditional E-value: 0.0077
                 T-CEEEEEEEEEE-SHHH CS
  Colicin_Ia  33 faGtikittsavidnran 50 
                 ++Gt+ it+s++  nra+
  KOO25133.1 669 YSGTVTITSSSISGNRAQ 686
                 89**************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (694 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       345  (0.0192426); expected 358.6 (0.02)
Passed bias filter:                      237  (0.0132188); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.54u 0.27s 00:00:00.81 Elapsed: 00:00:00.41
# Mc/sec: 5104.74
//
Query:       KOO25134.1  [L=395]
Description: 2og-fe oxygenase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.6e-15   57.4   0.0    2.7e-15   56.7   0.0    1.4  1  2OG-FeII_Oxy  2OG-Fe(II) oxygenase superfamily
    1.6e-09   38.6   0.0      3e-09   37.7   0.0    1.4  1  DIOX_N        non-haem dioxygenase in morphine synthesis N-te


Domain annotation for each model (and alignments):
>> 2OG-FeII_Oxy  2OG-Fe(II) oxygenase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.7   0.0     3e-19   2.7e-15       3      99 ..     216     320 ..     214     322 .. 0.87

  Alignments for each domain:
  == domain 1  score: 56.7 bits;  conditional E-value: 3e-19
                   -EEEEEE.E-S------.....---EEEEEESSSEEEEEEE-TT---EEEE..TEEEE----TTEEEEEE-HHHHHHTTS-S----EEE-.---GTG CS
  2OG-FeII_Oxy   3 ellvlny.ypphpdpev.....ilglgahtdaslltillqddvgglevfkd..gkwlrvppvdnslivniGdallflsngryksvlHrVl.pvnege 90 
                   +l++l + +p+ + p+v      +g  +h+d  llti  qd++ggl+  +    +w++vp +++++++  Gd l  +sng +  + HrVl p  ++e
    KOO25134.1 216 SLMRLFHyFPNTTAPHVapavpRIGSSPHSDWHLLTIVVQDTTGGLQARRPdaAEWIDVPAEPGEIVIILGDYLSAISNGSFVAPVHRVLlPPPPTE 312
                   5566666357777777777889*************************95444344****************************************99 PP

                   SEEEEEEEE CS
  2OG-FeII_Oxy  91 rRvsiayfi 99 
                    R+s +yf+
    KOO25134.1 313 -RFSFTYFR 320
                   .******97 PP

>> DIOX_N  non-haem dioxygenase in morphine synthesis N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.7   0.0   3.3e-13     3e-09      19     118 .]      51     163 ..      40     163 .. 0.78

  Alignments for each domain:
  == domain 1  score: 37.7 bits;  conditional E-value: 3.3e-13
      DIOX_N  19 aeqlreAcrevGffyvvnhgvpeelidelfeaareFFalPeeeKeklaksp....sfrGysrlgeektdgkkldwkesfdlgtelp........eddpa 105
                 ++qlr A+++ G+f +    v+    ++++ea+r FFalPe++K   ++        rGy +l+ e+  ++  ++ke+f +g e++        +    
  KOO25134.1  51 VKQLRIAASSLGVFRLAADSVDV---EAALEASRSFFALPEAVKWSAKSATgvggFKRGYIPLAGESGLRDYVELKEGFCYGAEPDgnestatsS---- 142
                 89****************99965...69*******************6654366466******999987789************65554444330.... PP

      DIOX_N 106 gkp..........legpnqwPee 118
                   +          l  pn wP+e
  KOO25134.1 143 --NattesnglklLLSPNAWPDE 163
                 ..122334455568899999985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (395 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       504  (0.0281109); expected 358.6 (0.02)
Passed bias filter:                      386  (0.0215294); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.49u 0.25s 00:00:00.74 Elapsed: 00:00:00.42
# Mc/sec: 2824.18
//
Query:       KOO25135.1  [L=188]
Description: ras gtpase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    3.9e-57  192.4   0.0    5.3e-57  191.9   0.0    1.2  1  Ras          Ras family
    1.7e-20   73.4   0.0    2.4e-20   72.9   0.0    1.2  1  Roc          Ras of Complex, Roc, domain of DAPkinase
    6.3e-10   38.8   0.0    7.2e-10   38.6   0.0    1.1  1  Arf          ADP-ribosylation factor family
      6e-05   23.0   0.1       0.26   11.2   0.0    2.4  2  RsgA_GTPase  RsgA GTPase
    6.6e-05   22.5   0.1    0.00024   20.7   0.1    1.9  1  GTP_EFTU     Elongation factor Tu GTP binding domain
    0.00021   21.3   0.0    0.00033   20.7   0.0    1.3  1  MMR_HSR1     50S ribosome-binding GTPase
     0.0018   17.8   0.0      0.003   17.0   0.0    1.3  1  SRPRB        Signal recognition particle receptor beta subuni
     0.0077   15.6   0.1      0.039   13.2   0.0    2.0  2  Septin       Septin
     0.0098   15.7   0.6       0.19   11.5   0.0    2.1  2  ATP_bind_1   Conserved hypothetical ATP binding protein
  ------ inclusion threshold ------
      0.018   14.5   0.0      0.057   13.0   0.0    1.8  1  FeoB_N       Ferrous iron transport protein B


Domain annotation for each model (and alignments):
>> Ras  Ras family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  191.9   0.0     3e-60   5.3e-57       1     161 [.       5     165 ..       5     166 .. 0.99

  Alignments for each domain:
  == domain 1  score: 191.9 bits;  conditional E-value: 3e-60
                 EEEEEESTTSSHHHHHHHHHHSSCSSSCTTTSSEEEEEEEEEETTEEEEEEEEEETTSGGGHHHHHHHHTTESEEEEEEETTBHHHHHTHHHHHHHHHH CS
         Ras   1 KlvlvGdsavGKtslllrfvkdkFkeeyesTigvdfytkeievdgkevkleiwDTAGqeefkslrelyyrdaegillvyditsresfenvkkwveeikr 99 
                 Klv+vG ++vGK++l+++ ++++F +ey++Ti +d+y+k+++vd++++ l+i+DTAGqee++++r++y+r+++g+l+vy+i ++ sfe+++++ e+i r
  KOO25135.1   5 KLVVVGGGGVGKSALTIQLIQNQFVDEYDPTI-EDSYRKQVTVDEETCLLDILDTAGQEEYSAMRDQYMRSGQGFLCVYSIANKGSFEEIATFREQILR 102
                 99******************************.****************************************************************** PP

                 HST.TTSEEEEEEETTTGGGG-SS-HHHHHHHHHHHTSEEEEEBTTTTCTHHHHHHHHHHHHH CS
         Ras 100 vae.envpivLvGnKvDleekravsteegeelakelglkfletSAktnenveeafeellreil 161
                 v++ ++vp+v+vGnK+Dl e+r+vs++eg+ela  +g++++etSAkt+ + e+ f+el+rei+
  KOO25135.1 103 VKDaDKVPMVIVGNKSDLGEERQVSQAEGKELAACYGCPWMETSAKTRIRCEDCFYELVREIR 165
                 **9999******************************************************997 PP

>> Roc  Ras of Complex, Roc, domain of DAPkinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   72.9   0.0   1.4e-23   2.4e-20       1     119 [.       5     119 ..       5     120 .. 0.87

  Alignments for each domain:
  == domain 1  score: 72.9 bits;  conditional E-value: 1.4e-23
                 EEEEESSTTSSHHHHHHCHCT-CCC-EEETTTTEEEEEEECGGSGGCTTBTTTTCEEEEEEEE-SGGCTTTT-HHHHCTSCEEEEEEE...GHHHHCHH CS
         Roc   1 KvvlvGdsgvGKtsllkrfvedkfsekekstigvdfltkevtkikgvendkkvkkvklniWDtaGqerfrslhplylreaalailvyd...srssenlk 96 
                 K+v+vG +gvGK+ l  ++++++f +++++ti  ++  k+v ++++       +++ l+i DtaGqe+++++++ y+r+ + +++vy    + s+e++ 
  KOO25135.1   5 KLVVVGGGGVGKSALTIQLIQNQFVDEYDPTIEDSYR-KQV-TVDE-------ETCLLDILDTAGQEEYSAMRDQYMRSGQGFLCVYSianKGSFEEIA 94 
                 99*******************************9985.555.3332.......5799******************************965344789999 PP

                 HHHHHHHHH..CSSS-EEEEEE-TT CS
         Roc  97 eWlkelkkv..agkspvilvgnkiD 119
                 +  +++ +v  a+k p+++vgnk D
  KOO25135.1  95 TFREQILRVkdADKVPMVIVGNKSD 119
                 9*999988722556799******99 PP

>> Arf  ADP-ribosylation factor family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.6   0.0     4e-13   7.2e-10      14     135 ..       3     128 ..       1     160 [. 0.86

  Alignments for each domain:
  == domain 1  score: 38.6 bits;  conditional E-value: 4e-13
                 EEEEEEEESTTSSHHHHHHHHHHSSCEE.CSSSSSEEE.EEEEE..TTEEEEEEEE-SSGGGGGGGGGGCTTESEEEEEEETT-CTTHHHHHHHHHHHC CS
         Arf  14 elrilllGLDnaGKtTilkklkleelvt.tvPTigfnv.eelei..knlkftvwDvGGqeklRplWknYfektdavifvvDsadreRleeakeeLkall 108
                 e++++++G  + GK+ +  +l ++++v+   PTi     +++++  ++  + + D  Gqe+   + ++Y+++ ++ + v   a++  +ee  +  +++l
  KOO25135.1   3 EYKLVVVGGGGVGKSALTIQLIQNQFVDeYDPTIEDSYrKQVTVdeETCLLDILDTAGQEEYSAMRDQYMRSGQGFLCVYSIANKGSFEEIATFREQIL 101
                 89****************9999999876489***8765144554337889************************************************* PP

                 TSGCCTTSEEEEEEE-TTSTTSS-HHH CS
         Arf 109 eeeelkevallvlaNKqDlpealseee 135
                 + ++  +v++++++NK Dl e  + ++
  KOO25135.1 102 RVKDADKVPMVIVGNKSDLGEERQVSQ 128
                 ******************987654443 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.9   0.2   0.00035      0.62     102     123 ..       6      27 ..       1      67 [. 0.78
   2 !   11.2   0.0   0.00015      0.26      36      92 ..      98     155 ..      76     168 .. 0.78

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.00035
                  EEEECSTTSSHHHHHHHHCTT- CS
  RsgA_GTPase 102 svlvGqSGvGKStLinallpel 123
                   v+vG  GvGKS+L  +l++++
   KOO25135.1   6 LVVVGGGGVGKSALTIQLIQNQ 27 
                  689***********99998874 PP

  == domain 2  score: 11.2 bits;  conditional E-value: 0.00015
                  HHHHHHHHHTT-EEEEEEE-GGG--HHH.HHHHHHHHHHHTTSEEEE--TTTHTTHHH CS
  RsgA_GTPase  36 drfLvlaeekgiepvivlnKiDlleeee.eleelkeelealgyevllvsaktkeglee 92 
                  +++L +  + ++++viv nK Dl ee++ +  e ke  + +g++ + +sakt+  +e+
   KOO25135.1  98 EQILRVKDADKVPMVIVGNKSDLGEERQvSQAEGKELAACYGCPWMETSAKTRIRCED 155
                  56777888999*****************555556667777899999999999877665 PP

>> GTP_EFTU  Elongation factor Tu GTP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.7   0.1   1.3e-07   0.00024      61     138 ..      44     124 ..       3     182 .. 0.83

  Alignments for each domain:
  == domain 1  score: 20.7 bits;  conditional E-value: 1.3e-07
                 EEEETTCSSEEEEEEEESSSGGGHHHHHHHHHT-SEEEEEEETT.TB....STHHHHHHHHHHHHTTTEEEEEEESCGSTHHH CS
    GTP_EFTU  61 isleketkkylinliDtPGHvdFskevirglrvlDgavlvvdav.eG....vepqteevlrlalkegvpiivfiNKmDrlkae 138
                 +++  +++++l+ ++Dt G +++s    + +r   g + v +++ +G    + +  e++lr+  + +vp++++ NK D  +++
  KOO25135.1  44 VTV--DEETCLLDILDTAGQEEYSAMRDQYMRSGQGFLCVYSIAnKGsfeeIATFREQILRVKDADKVPMVIVGNKSDLGEER 124
                 333..5999********************************97644465558888999********************87443 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.7   0.0   1.8e-07   0.00033       2     114 .]       6     117 ..       5     117 .. 0.75

  Alignments for each domain:
  == domain 1  score: 20.7 bits;  conditional E-value: 1.8e-07
                 EEEEESTTSSHHHHHHHHHTSTEEESSSTTSSSSEEEEEEEETTEE..EEEEECGGCSSHHHHHHHHHHHHHHHHCTSEEEEEEETT.....TTCSHHH CS
    MMR_HSR1   2 vaivGrpNvGKStLinaltgekaivsdkpgtTrdinegrvklkgke..ielvDtpGliegaseekglgkaflaleeadlillvvdas.....eeklkpl 93 
                  ++vG   vGKS L  +l+++   v ++  t  d  +++v+++++   + ++Dt+G  e   e   +++++ +  +   +l v +++     e +++  
  KOO25135.1   6 LVVVGGGGVGKSALTIQLIQN-QFVDEYDPTIEDSYRKQVTVDEETclLDILDTAG-QE---EYSAMRDQYMRSGQ--GFLCVYSIAnkgsfE-EIATF 96 
                 689****************96.6699999999999888888666333389******.55...44489999997666..555555544345533.57778 PP

                 HHHHHHHHHHTTSEEEEEEES CS
    MMR_HSR1  94 deeleelleeakkplilvlnk 114
                 +e++ ++++ +k p+++v nk
  KOO25135.1  97 REQILRVKDADKVPMVIVGNK 117
                 888888887799999999987 PP

>> SRPRB  Signal recognition particle receptor beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.0   0.0   1.7e-06     0.003       5     129 ..       5     125 ..       2     136 .. 0.82

  Alignments for each domain:
  == domain 1  score: 17.0 bits;  conditional E-value: 1.7e-06
                 EEEEE-STTSSHHHHHHHHHHSS---B---S.S-EEETTG....GGTT-SEEEETT-GCCSHHHHHHHHHHGGEEEEEEEEETTS-HHHHHHHHHHHHH CS
       SRPRB   5 avllvGlsdsGKTslftrLttdsvkktvtSq.essaalkvkse.kgskltliDfPGheklrqklleklkaksslkglvfvvDStidpkevkevAEllye 101
                 ++++vG    GK +l  +L ++++ + +    e s  ++v+ + +   l+++D  G+e+    + ++  + +s +g +  v S +++   +e+A +  +
  KOO25135.1   5 KLVVVGGGGVGKSALTIQLIQNQFVDEYDPTiEDSYRKQVTVDeETCLLDILDTAGQEEYSA-MRDQ--YMRSGQGFL-CVYSIANKGSFEEIATFREQ 99 
                 57899999**************9998887666999988885540556789********9865.5666..566777776.467999999*********** PP

                 HHHHHHHHTT---EEEEEE-TTSTT--- CS
       SRPRB 102 illiteklkdavdiliACnKqelflaks 129
                 il ++    d+v+++i  nK++l   ++
  KOO25135.1 100 ILRVKD--ADKVPMVIVGNKSDLGEERQ 125
                 **9877..9*************987666 PP

>> Septin  Septin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.2   0.0   2.2e-05     0.039       4      55 ..       3      53 ..       1      62 [. 0.85
   2 ?   -0.7   0.0      0.38   6.9e+02      76     102 ..     151     177 ..     149     185 .. 0.77

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 2.2e-05
                EEEEEEEEBTTSSCCCCCCTTSSSS------------------S-EEEEEEE CS
      Septin  4 eftlmvvGesglGkttlintlfetdlieeekleeasekkkktveikkkkvvi 55
                e+ l+vvG  g+Gk++l   l++++ ++e   ++ +++ +k+v++++++ ++
  KOO25135.1  3 EYKLVVVGGGGVGKSALTIQLIQNQFVDEY-DPTIEDSYRKQVTVDEETCLL 53
                6789***********************995.566677889999998877654 PP

  == domain 2  score: -0.7 bits;  conditional E-value: 0.38
                 SSHHCCCHHHHHHHHHHHHHHHHHCTS CS
      Septin  76 vdnskswepiveyideqfeeylreesk 102
                 + +++++  +v++i++  e+ l++ +k
  KOO25135.1 151 IRCEDCFYELVREIRKSAEAELKSKRK 177
                 678999999**9999999988876543 PP

>> ATP_bind_1  Conserved hypothetical ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.9   0.3     0.043        78       1      18 [.       8      25 ..       8      36 .. 0.86
   2 !   11.5   0.0   0.00011      0.19      92     173 ..      52     127 ..      29     171 .. 0.80

  Alignments for each domain:
  == domain 1  score: 2.9 bits;  conditional E-value: 0.043
  ATP_bind_1  1 vvGpaGsGKttfvgalse 18
                vvG+ G+GK+ ++ +l++
  KOO25135.1  8 VVGGGGVGKSALTIQLIQ 25
                89*********9988876 PP

  == domain 2  score: 11.5 bits;  conditional E-value: 0.00011
  ATP_bind_1  92 dyllfDtPGQielfthseslakiveeLes.efalvvvyLvDsqrltdptkfisgllsalsamlrlelPhvvvlnkfDllkek..l 173
                  + ++Dt GQ e   ++++         s ++ l+v  +++    ++ ++f ++    l++    ++P+v+v nk Dl +e+  +
  KOO25135.1  52 LLDILDTAGQEEYSAMRDQYM------RSgQGFLCVYSIANKGSFEEIATFREQ---ILRVKDADKVPMVIVGNKSDLGEERqvS 127
                 45689************9988......7789***********************...66777789*************7755432 PP

>> FeoB_N  Ferrous iron transport protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.0   3.2e-05     0.057       2     151 ..       5     155 ..       4     160 .. 0.73

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 3.2e-05
                 EEEEEESTTSSHHHHHHHHHTTSEEEEESTTSSSEEEEEEEEETTEEEEEEE----SSSSSSSHHHHHHHHHHHCTS.SSEEEEEEEGGGHHHHHHHHH CS
      FeoB_N   2 tvalvGnpnvGkttlfnaltgakqkvgNwpGvtvekkegklklkgkeveivDlPGiYslsayseeekvardflleee.pdvvvnvvdatnlernLyLtl 99 
                 ++++vG   vGk++l  +l + +q v  +   t+e +  k  + ++e+ ++D+  +   ++ys    +  +++ + + + +v ++++  ++e   ++  
  KOO25135.1   5 KLVVVGGGGVGKSALTIQLIQ-NQFVDEYDP-TIEDSYRKQVTVDEETCLLDILDTAGQEEYS---AMRDQYMRSGQgFLCVYSIANKGSFEEIATFRE 98 
                 567899999999999999875.688999975.6666655555577778888864333333333...344566766552456668999999999999999 PP

                 HHHHTT....SSEEEEEETHHHHHHTTE.EE-HHHHHHHHTS-EEEEBTTTTBTHHH CS
      FeoB_N 100 qllelg....vpvvlalnmideaekkgi.eidlkkLsekLgvpvvktsakkkegiee 151
                 q+l ++    vp+v++ n++d  e++++ + + k+L++  g+p ++tsak++  +e+
  KOO25135.1  99 QILRVKdadkVPMVIVGNKSDLGEERQVsQAEGKELAACYGCPWMETSAKTRIRCED 155
                 999875444589**********988875268899****************9887765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (188 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       790  (0.0440627); expected 358.6 (0.02)
Passed bias filter:                      588  (0.032796); expected 358.6 (0.02)
Passed Vit filter:                        80  (0.00446204); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.47u 0.26s 00:00:00.73 Elapsed: 00:00:00.42
# Mc/sec: 1347.25
//
Query:       KOO25136.1  [L=184]
Description: rubredoxin-like protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.2e-10   41.2   5.3    1.7e-10   40.7   5.3    1.3  1  Rubredoxin     Rubredoxin
    0.00078   19.4   0.1     0.0013   18.8   0.1    1.4  1  HypA           Hydrogenase/urease nickel incorporation, metal
  ------ inclusion threshold ------
      0.084   13.3   0.2       0.14   12.5   0.2    1.4  1  eIF3g          Eukaryotic translation initiation factor 3 sub
       0.29   11.0   4.0          4    7.4   0.2    2.4  2  TFIIS_C        Transcription factor S-II (TFIIS)
       0.71   10.0   3.0        6.6    6.9   0.3    2.2  2  Elf1           Transcription elongation factor Elf1 like
       0.73    9.8   3.4        4.3    7.3   0.1    2.3  2  zinc_ribbon_4  zinc-ribbon domain
       0.75    9.6   6.2          8    6.3   1.3    2.5  2  Rubredoxin_2   Rubredoxin metal binding domain


Domain annotation for each model (and alignments):
>> Rubredoxin  Rubredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.7   5.3   6.8e-14   1.7e-10       3      47 .]      92     134 ..      90     134 .. 0.94

  Alignments for each domain:
  == domain 1  score: 40.7 bits;  conditional E-value: 6.8e-14
                 EETTT-BEEETTTBBGGGTB-TT--GGGS-TT-BBTTTB-BGGGE CS
  Rubredoxin   3 eCkvCgyvYdpakGdpdegiapgTkFedlPddWvCPdCgvekeqF 47 
                 +C++Cgy Y  ++G p  gi+  T+Fe +Pd W CP+C+ +k  F
  KOO25136.1  92 KCNTCGYKYKWEEGAP--GIPKRTPFELVPDSWSCPNCKSPKAFF 134
                 8*************98..9*********************99876 PP

>> HypA  Hydrogenase/urease nickel incorporation, metallochaperone, hypA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.8   0.1   4.9e-07    0.0013      63      97 ..      78     132 ..      28     145 .. 0.73

  Alignments for each domain:
  == domain 1  score: 18.8 bits;  conditional E-value: 4.9e-07
                 E.....EEEE--EEEETTTS-EEECHHHHH...............S-TTTSSS-E CS
        HypA  63 e.....ieevpvkvrCreCgkefeleekal...............rCpkCgsadv 97 
                 +     i++   +++C++Cg++++ ee a                +Cp+C+s + 
  KOO25136.1  78 RaaekfIQKATGNAKCNTCGYKYKWEEGAPgipkrtpfelvpdswSCPNCKSPKA 132
                 2444449999**************886323568899***************9874 PP

>> eIF3g  Eukaryotic translation initiation factor 3 subunit G
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.2   5.6e-05      0.14      54     113 ..      46     100 ..      25     107 .. 0.67

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 5.6e-05
       eIF3g  54 fGdekgdkpgpnsatttvgeevelkleeekeeekeeeekekaklkkkekklvkCriCk.gd 113
                 fGd+   + + ++at ++gee el+ +e++ ++ +++ek  +k++    +  kC++C+  +
  KOO25136.1  46 FGDAD--DMSDSTATAIMGEERELTEREKEIARLRAAEKFIQKAT---GN-AKCNTCGyKY 100
                 56554..455566799********997555333333333333333...34.89****7455 PP

>> TFIIS_C  Transcription factor S-II (TFIIS)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.6   0.4     0.012        30      29      39 .]      91     101 ..      87     101 .. 0.83
   2 ?    7.4   0.2    0.0016         4       2      14 ..     123     135 ..     122     138 .. 0.89

  Alignments for each domain:
  == domain 1  score: 4.6 bits;  conditional E-value: 0.012
     TFIIS_C  29 ykCtkCghrWr 39 
                  kC++Cg++++
  KOO25136.1  91 AKCNTCGYKYK 101
                 58999999986 PP

  == domain 2  score: 7.4 bits;  conditional E-value: 0.0016
     TFIIS_C   2 kCpkCgsreayff 14 
                  Cp+C+s +a+f 
  KOO25136.1 123 SCPNCKSPKAFFA 135
                 5*********985 PP

>> Elf1  Transcription elongation factor Elf1 like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.9   0.3    0.0026       6.6      41      58 ..      86     103 ..      75     107 .. 0.85
   2 ?    3.5   0.2     0.029        74      18      31 ..     118     131 ..     106     136 .. 0.76

  Alignments for each domain:
  == domain 1  score: 6.9 bits;  conditional E-value: 0.0026
        Elf1  41 ekiaevsCkvCgesfetk 58 
                 + +++++C++Cg +++++
  KOO25136.1  86 KATGNAKCNTCGYKYKWE 103
                 5699*********99865 PP

  == domain 2  score: 3.5 bits;  conditional E-value: 0.029
        Elf1  18 lptkFdCpfCnhek 31 
                 +p +++Cp+C++ k
  KOO25136.1 118 VPDSWSCPNCKSPK 131
                 78899*****9986 PP

>> zinc_ribbon_4  zinc-ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.3   0.1    0.0017       4.3      17      34 ..      81      99 ..      79     101 .. 0.82
   2 ?    2.7   0.7     0.047   1.2e+02       4      10 ..     123     129 ..     122     131 .. 0.84

  Alignments for each domain:
  == domain 1  score: 7.3 bits;  conditional E-value: 0.0017
  zinc_ribbon_4 17 ek.lpakgvkvrCskCghv 34
                   ek +++++++++C  Cg +
     KOO25136.1 81 EKfIQKATGNAKCNTCGYK 99
                   56589999********976 PP

  == domain 2  score: 2.7 bits;  conditional E-value: 0.047
  zinc_ribbon_4   4 tCpsCka 10 
                    +Cp+Ck+
     KOO25136.1 123 SCPNCKS 129
                    6999985 PP

>> Rubredoxin_2  Rubredoxin metal binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.4   0.3     0.006        15       3      10 ..      93     100 ..      92     102 .. 0.86
   2 ?    6.3   1.3    0.0031         8      15      22 ..     122     129 ..     121     129 .. 0.89

  Alignments for each domain:
  == domain 1  score: 5.4 bits;  conditional E-value: 0.006
  Rubredoxin_2   3 CsqCGfes 10 
                   C+ CG+++
    KOO25136.1  93 CNTCGYKY 100
                   ******87 PP

  == domain 2  score: 6.3 bits;  conditional E-value: 0.0031
  Rubredoxin_2  15 GrCpsCgs 22 
                   + Cp+C+s
    KOO25136.1 122 WSCPNCKS 129
                   9*****96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (184 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       881  (0.0491383); expected 358.6 (0.02)
Passed bias filter:                      671  (0.0374254); expected 358.6 (0.02)
Passed Vit filter:                        65  (0.00362541); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.41u 0.24s 00:00:00.64 Elapsed: 00:00:00.39
# Mc/sec: 1426.21
//
Query:       KOO25137.1  [L=428]
Description: tropinone reductase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    5.4e-55  186.5   0.1    7.4e-55  186.0   0.1    1.1  1  adh_short_C2    Enoyl-(Acyl carrier protein) reductase
    3.8e-46  157.0   0.0    5.3e-46  156.6   0.0    1.1  1  adh_short       short chain dehydrogenase
    3.2e-07   30.4   0.3    4.9e-07   29.8   0.3    1.2  1  KR              KR domain
    9.8e-05   21.9   0.4    0.00035   20.1   0.4    1.9  1  Epimerase       NAD dependent epimerase/dehydratase family
     0.0056   16.6   0.2     0.0086   16.0   0.2    1.4  1  NAD_binding_10  NAD(P)H-binding


Domain annotation for each model (and alignments):
>> adh_short_C2  Enoyl-(Acyl carrier protein) reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  186.0   0.1   2.1e-58   7.4e-55       3     231 ..     187     415 ..     183     417 .. 0.95

  Alignments for each domain:
  == domain 1  score: 186.0 bits;  conditional E-value: 2.1e-58
                   TTSHHHHHHHHHHHTT-EEEEEESSGGHHHHHHHHHHHTTSEE.EE--TTSHHHHHHHHHHHHHHH.SSEEEEEE-----EGCSS-GGGH-HHHHHH CS
  adh_short_C2   3 asgIGraiAkalaeeGaevvltdlneeakkrveelaeelgaev.lecDVtdeeqvealveevvekf.gklDilvnnagiapklkgpfletsreefdr 97 
                    +g+Grai+++l ++G+ev+ + ++      +++l+++ ++ v +++DV+  e  ++l + +++++ g+lDilvnn+g   + ++  +e +++e+d 
    KOO25137.1 187 SKGLGRAIVEELLKHGCEVLTCARDLTP---LAALVSSEPRCVaVQADVATAEGRQKLLALIARRYsGNLDILVNNVGTNLRRTSASHEYTDAEYDL 280
                   58********************999888...8888887777755**************************************888899********* PP

                   HHHHHTHHHHHHHHHHHHHCTSC.CEEEEEEEGGGTSBSTTTTHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEE--BHCTGGGGSTTHHHHHHHHH CS
  adh_short_C2  98 aldvnlyslfllakaalplmkeg.gsivnlssvgaervvpnynaygaaKaalealtrylAvelgpkgiRvNavspgpikTlaasgikgfdelleele 193
                   ++ +n  s+f+l++++  ++k++ gs+vn+ssv++++v +  + y+++Kaale++trylA e+gp+g+RvNav+p +i T++++ + + +++ ++++
    KOO25137.1 281 VHTTNQSSAFHLTRQCYAALKKRkGSVVNVSSVSGSMVDNTGAPYAMTKAALEQMTRYLACEWGPDGVRVNAVAPWFISTPLTEPFLRDSSFHAAVK 377
                   ******************666655***********99999999****************************************************** PP

                   HHSTTSS-B-HHHHHHHHHHHCSGGGTT--SEEEEEST CS
  adh_short_C2 194 araplgrlgtpeevaeaalfLasdeasyitGqtlvvDg 231
                   + +plgr+g+p+eva +++fLa ++a yitGq+l +Dg
    KOO25137.1 378 RVTPLGRVGEPHEVACVVAFLAMPAAGYITGQVLGIDG 415
                   *************************************8 PP

>> adh_short  short chain dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  156.6   0.0   1.5e-49   5.3e-46       1     189 [.     179     365 ..     179     370 .. 0.96

  Alignments for each domain:
  == domain 1  score: 156.6 bits;  conditional E-value: 1.5e-49
                 SEEEEESTTSHHHHHHHHHHHHTT-EEEEEESCHHHHHHHHHHHHHTTSEEEEEE-TTTSHHHHHHHHHHHHHHH.SSESEEEE---S..S--SSGGGC CS
   adh_short   1 kvvlvtGassGIGraiakelakeGakvvvvdrseekleevakelkeegakalaiqvDvtdreevealvekavkkl.gkldvLvnNAGi..tgsgpfsel 96 
                 kv+lvtG+s+G+Grai++el+k G++v+ ++r   +l++++++      + +a+q+Dv+++e  ++l++ ++ ++ g+ld+LvnN+G    ++++ +e+
  KOO25137.1 179 KVALVTGGSKGLGRAIVEELLKHGCEVLTCARDLTPLAALVSSEP----RCVAVQADVATAEGRQKLLALIARRYsGNLDILVNNVGTnlRRTSASHEY 273
                 89***********************************99999855....59*************************************999999***** PP

                 SHHHHHHHHHHHTHHHHHHHHHHHHHHHHCTTEEEEEEEEGGGTSB-TTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBSSHHHHH CS
   adh_short  97 seeewervievNltgvflltravlpamlkqssGrIvnvsSvagkvpvagvaaYsAsKaavagltrslakelaptgirvnavaPGlvdTdmake 189
                 +++e++ v  +N  ++f+ltr+++ a lk+++G++vnvsSv g +  + +a+Y+ +Kaa++++tr la e+ p+g+rvnavaP +++T+++++
  KOO25137.1 274 TDAEYDLVHTTNQSSAFHLTRQCYAA-LKKRKGSVVNVSSVSGSMVDNTGAPYAMTKAALEQMTRYLACEWGPDGVRVNAVAPWFISTPLTEP 365
                 **************************.6699**********************************************************9986 PP

>> KR  KR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.8   0.3   1.4e-10   4.9e-07       3     163 ..     181     339 ..     179     352 .. 0.89

  Alignments for each domain:
  == domain 1  score: 29.8 bits;  conditional E-value: 1.4e-10
                 EEEETTTSHHHHHHHHHHHHHHS-EEEEE-SS..--HHHHHHHHHHHHTT-EEEE----TT-HHHHHHHHHHHHHHS.S---EEEE-----..----TT CS
          KR   3 ylitGGlGgLGlelarwlaekgarhlvllsRsaaadedskaliaelealgaevevvaaDvsdkdavealleeikaee.ppikGvihaAgvl..rdklle 98 
                  l+tGG  gLG+++++ l+++g + l  ++R+        + +a+l +++ ++ +v+aDv+ ++  ++ll+ i ++  +++   ++  g+   r+++  
  KOO25137.1 181 ALVTGGSKGLGRAIVEELLKHGCEVL-TCARD-------LTPLAALVSSEPRCVAVQADVATAEGRQKLLALIARRYsGNLDILVNNVGTNlrRTSASH 271
                 59********************8755.67788.......35788999***************************99999***99998776422567778 PP

                 T--HHHHHHHHTTTTHHHHHHHHHTTT...S--SEEEEEEEHHHHH--TT-HHHHHHHHHHHHHHHHH CS
          KR  99 emtaedleqvlapKvkGawnLhelled...esldffvlfSSiagllgsagqanYaaaNaflDalaeyr 163
                 e t+++++ v     + a +L + +     ++   +v +SS++g +  ++ a Ya + a l+++ +y 
  KOO25137.1 272 EYTDAEYDLVHTTNQSSAFHLTRQCYAalkKRKGSVVNVSSVSGSMVDNTGAPYAMTKAALEQMTRYL 339
                 89999****************99887667688999***************************999885 PP

>> Epimerase  NAD dependent epimerase/dehydratase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.1   0.4   9.7e-08   0.00035       1     161 [.     181     344 ..     181     355 .. 0.77

  Alignments for each domain:
  == domain 1  score: 20.1 bits;  conditional E-value: 9.7e-08
                 EEEETTTSHHHHHHHHHHHHCTSEEEEEES-STTTTCHHCHHC..EEEE--TT-HHHHHHHHHHHT-SEEEE--S.---HHHHHHSHHHHHHHHTHHHH CS
   Epimerase   1 ilVtGatGfiGsalvkallekgyevigldrlssasntarledl..elveldltdrsalerlfkeeqpdavihlAa.vggvaassedpadfieknlqgtl 96 
                 +lVtG++  +G+a+v++ll++g ev++ +r+ +  +     +     v++d+  ++  ++l++  +  +  +l   v +v+++  + ++  ++ +   +
  KOO25137.1 181 ALVTGGSKGLGRAIVEELLKHGCEVLTCARDLTPLAALVSSEPrcVAVQADVATAEGRQKLLALIARRYSGNLDIlVNNVGTNLRRTSA-SHEYTDAEY 278
                 59**********************99999995555444444337899999**9999999999998999999998879999998888666.555778888 PP

                 HHHHHHHHHTCTEEEEEEEGGGGTSCSSSS....BSTCSTTS--..--SSHHHHHHHHHHHHHHHHHHHHT CS
   Epimerase  97 nlleaarkagvkrllflsSsevYGkdaeqp....keettltgpl..kpnspYaaaKlageklveayaaqyg 161
                 +l++  +++ +    f  + + Y + ++      + +++ +g++  ++  pYa++K+a e++++++a + g
  KOO25137.1 279 DLVHTTNQSSA----FHLTRQCYAALKKRKgsvvNVSSV-SGSMvdNTGAPYAMTKAALEQMTRYLACEWG 344
                 88888887777....777888888888742234333333.444468******************9887766 PP

>> NAD_binding_10  NAD(P)H-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.2   2.4e-06    0.0086       1      70 [.     185     262 ..     185     343 .. 0.67

  Alignments for each domain:
  == domain 1  score: 16.0 bits;  conditional E-value: 2.4e-06
                     TTTSHHHHHHHHHHHHC-T-EEEEEETTHHHCHHHH.CTTTCEEEE--TT-CCHHHHHHT........T-SEEEES--- CS
  NAD_binding_10   1 GAtGkvGrllvkellargghevtalvRnpeklaele.aeeglevvegdvtdvedlaealk........gadaVvsalgg 70 
                     G++ + Gr++v+ell++ g ev   +R+   la+l  +e+++ +v++dv ++e  ++ l+        + d+ v ++g+
      KOO25137.1 185 GGSKGLGRAIVEELLKH-GCEVLTCARDLTPLAALVsSEPRCVAVQADVATAEGRQKLLAliarrysgNLDILVNNVGT 262
                     89999************.5*********99999875377**********998876666654445555555666666654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (428 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       648  (0.0361426); expected 358.6 (0.02)
Passed bias filter:                      537  (0.0299515); expected 358.6 (0.02)
Passed Vit filter:                        51  (0.00284455); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.58u 0.29s 00:00:00.86 Elapsed: 00:00:00.47
# Mc/sec: 2721.88
//
Query:       KOO25138.1  [L=318]
Description: phytoene dehydrogenase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.069   13.4   0.2       0.15   12.4   0.2    1.6  1  DUF4226   Domain of unknown function (DUF4226)


Domain annotation for each model (and alignments):
>> DUF4226  Domain of unknown function (DUF4226)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.2   8.2e-06      0.15      37      73 ..      45      81 ..      10      84 .. 0.91

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 8.2e-06
     DUF4226 37 ahakaaegrrrLdalqaeidqavatqalaldTpaGar 73
                a++ +  + +rL+++ + +++a+ + a+al T +Ga+
  KOO25138.1 45 AEQSEITSSERLATIGRTVQRAATAVAVALKTAMGAA 81
                67788899***************************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (318 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       478  (0.0266607); expected 358.6 (0.02)
Passed bias filter:                      343  (0.019131); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.25s 00:00:00.67 Elapsed: 00:00:00.39
# Mc/sec: 2471.79
//
Query:       KOO25139.1  [L=606]
Description: hypothetical protein Ctob_003826 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (606 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       307  (0.0171231); expected 358.6 (0.02)
Passed bias filter:                      276  (0.0153941); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.54u 0.23s 00:00:00.77 Elapsed: 00:00:00.42
# Mc/sec: 4314.96
//
Query:       KOO25140.1  [L=698]
Description: translocation protein sec63 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.1e-14   54.2   0.2    2.4e-14   53.2   0.0    1.7  2  DnaJ      DnaJ domain


Domain annotation for each model (and alignments):
>> DnaJ  DnaJ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.2   0.0   1.3e-18   2.4e-14       1      59 [.      60     117 ..      60     120 .. 0.94
   2 ?   -3.9   0.0      0.88   1.6e+04      52      60 ..     221     229 ..     217     230 .. 0.83

  Alignments for each domain:
  == domain 1  score: 53.2 bits;  conditional E-value: 1.3e-18
                 HHHHHHTSSTTG-HHHHHHHHHHHHHHHSTTTSCCHHHHHHHHHHHHHHHHHHTSHHHH CS
        DnaJ   1 dyYeiLgvskdasedeIkkaYrklalkyHPDknpkdpeaeekFkeineAyevLsdpekR 59 
                 d++e Lg++++++  e+k+aYr+la+ yHPDkn  dp a+ +F  i +A+ +L+dp   
  KOO25140.1  60 DPHEALGIDSSSNITEVKAAYRQLARVYHPDKN-PDPAARARFSAIVKAHAILTDPVAA 117
                 67899****************************.999******************9765 PP

  == domain 2  score: -3.9 bits;  conditional E-value: 0.88
                 HHTSHHHHH CS
        DnaJ  52 vLsdpekRk 60 
                  Lsd+++R+
  KOO25140.1 221 ALSDEQRRA 229
                 699*99996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (698 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       538  (0.0300073); expected 358.6 (0.02)
Passed bias filter:                      358  (0.0199677); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.59u 0.27s 00:00:00.86 Elapsed: 00:00:00.41
# Mc/sec: 5104.71
//
Query:       KOO25141.1  [L=1109]
Description: potassium voltage-gated channel subfamily h member 7 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    9.5e-17   61.2   0.0    1.8e-16   60.3   0.0    1.4  1  C2            C2 domain
    4.1e-15   55.7   6.3    5.7e-15   55.2   6.3    1.2  1  Ion_trans     Ion transport protein
    0.00021   21.3   0.0    0.00055   20.0   0.0    1.7  1  cNMP_binding  Cyclic nucleotide-binding domain
  ------ inclusion threshold ------
       0.84    9.5   4.1       0.28   11.0   0.2    2.1  2  Lig_chan      Ligand-gated ion channel


Domain annotation for each model (and alignments):
>> C2  C2 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.3   0.0   4.1e-20   1.8e-16       1      90 [.     179     270 ..     179     284 .. 0.90

  Alignments for each domain:
  == domain 1  score: 60.3 bits;  conditional E-value: 4.1e-20
                 TEEEEEEEEEESSSSSSTTSSCEEEEEEEEECEEEEEE-SCSSSSSSEE.EEEEEEEESC..HTTSEEEEEEEEECSSSTEEEEEEEEEEGHH CS
          C2   1 gklevtvieAknLpnkdkkgssdpyvkvsldgkqkakTrviknslnPvW.nekftfevae..leeakLeveVfdndrlskddfiGkveiplst 90 
                 g+l v+ i+A++L + d +g sdpy+k++l g q++++r    +l+PvW ne ftf        ++ L+v+V+d+d  s dd++G++ei+l++
  KOO25141.1 179 GTLYVQLISATGLVAADSNGLSDPYCKLDL-GGQRQRSRKLYETLDPVWhNEIFTFAGVLgqVVNEPLKVSVWDFDLSSVDDMLGEAEIELAD 270
                 6899**************************.********77********66*****54445699**************************987 PP

>> Ion_trans  Ion transport protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.2   6.3   1.3e-18   5.7e-15       2     242 ..     364     678 ..     363     681 .. 0.76

  Alignments for each domain:
  == domain 1  score: 55.2 bits;  conditional E-value: 1.3e-18
                 HHHHHHHHHHHHHHHHHHHCCCSSSS...................HHHHC..HHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHCHSHHHHHHHHHHH CS
   Ion_trans   2 svfelfilllillncvflaletyfpe...................delek..tileilelvftaiftlemllkilalgllikkrYlrdpwnilDflvvl 79 
                 s+++++  ++il+ +++++le +f++                    ++++  +++++l+++++++f++++ +++++ ++ ++++++ d w ++    + 
  KOO25141.1 364 STWNVVLAFFILYCALAVPLEIAFESdmvrafctrpedpfgpqiyRQECNsfQLWFWLNFLVDVWFMIDITINFRTGYM-HEGHFVNDDWPVMKAYLTG 461
                 68****************************************9985555579************************999.9999999999999999999 PP

                 HHHHHH...............HHHH.............................HHHHHHHHHHHHGGGGGGHHHCHSHHHHHHHH.HHHHHHHHHHHH CS
   Ion_trans  80 psllsl...............vlse.............................esllllsvlrlfrvlrllklisrleglrtlvt.alirsvkdllnv 133
                  + l++               +  +                               l l+++ +l +++r+ kl + le+++ +++ +++ ++k ++ +
  KOO25141.1 462 AFGLDVagtiplgiiqmltnpD--NpfgdeqitqmkmaadeaaggtggdsaqsaRMLRLMRMAKLTKLARMRKLAKVLESFEEYLNpSVLAVFKLVFIL 558
                 9999887777777776666550..155555566666777888888888777666666677777777777778888999999999999999999999999 PP

                 HHHHHHHHHHHHHHH.HHHHTTSCCCC..................CCSCCSTSSSTTTSSS...SSSHHHHHHHHHHHHTTSSHHHHHHHHHHHSHHHH CS
   Ion_trans 134 lllllvvlfifalig.vqlfkgklrek..................necaktwenpnngntn...Fdnfftallwlfrlmttegwgdilyatldekskva 210
                 l+ ++++++++ +i+ +++  +    +                  ++ +++w+ p+  +++     ++++a++w   ++t+ g   + ++t  e     
  KOO25141.1 559 LFCCHLFGCLWWMISdLEIA-E----EldgassyswmntpyyaieSSGKNEWHPPHWLKNEasvTMKYMHAFFWGAGMITSLGERHVNPVTVVEL---- 648
                 99999999999999955555.3....33333555555445554431144555555333333333557********************99999999.... PP

                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
   Ion_trans 211 liyfvifiilgsflllNlliaviadnfqelte 242
                   ++ + i++++++l + +i   + ++++++ 
  KOO25141.1 649 --IVTCAIMFFALMLNAFVISSLNQALASMNA 678
                 ..777777776666666666666666666655 PP

>> cNMP_binding  Cyclic nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.0   0.0   1.2e-07   0.00055       6      88 ..     775     858 ..     772     859 .. 0.79

  Alignments for each domain:
  == domain 1  score: 20.0 bits;  conditional E-value: 1.2e-07
                   TT-EEE-TTSB-SEEEEEEES-EEEEEEETTS.EEEEE...EE-TTEE.ESHHHHHHTS--SSEEEESSTEEEEEEEHHHHHHHHHH CS
  cNMP_binding   6 agevifrqGdpadslyivlsGevrvyrlsedgkevvla...vlgpGdl.fGelalltgeprtatvvAltdsellalprddflellqq 88 
                   + + + +qG + +++y++ +G v++  ++ dg e+++      g  d+  G ++  +  +++ t+ A+t + +++l+ + ++++l++
    KOO25141.1 775 PAQRVAKQGMALKNVYFINRGIVKI--STHDGTERTISnneNCGLDDYwTGSISNER-PQCSGTADAITYCDIMCLEVKLMDKALER 858
                   568899*******************..9******87774333343455356655555.569999************99999888876 PP

>> Lig_chan  Ligand-gated ion channel
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.7      0.45     2e+03       4      54 ..     365     425 ..     363     431 .. 0.53
   2 ?   11.0   0.2   6.3e-05      0.28      21     107 ..     596     683 ..     584     909 .. 0.84

  Alignments for each domain:
  == domain 1  score: -1.5 bits;  conditional E-value: 0.45
                 XXXXXXTXXXXXXXXXXXXXXXXXXXXX........XXXXXXXX........XXXHHHHHHHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxx........xxxxxxxx........xxxxxxxxxxxxxxx RF
    Lig_chan   4 vWlsvlvalilvsivlflverfspyewr........epeeaaet........veneftlsnslwfsl 54 
                 +W +vl+++il +++ + +e   ++++                         ++n+f+l+  l+f +
  KOO25141.1 365 TWNVVLAFFILYCALAVPLEIAFESDMVrafctrpeD------PfgpqiyrqECNSFQLWFWLNFLV 425
                 6777766665554444444433333333234433330......144444444899999998888865 PP

  == domain 2  score: 11.0 bits;  conditional E-value: 6.3e-05
                 XXXXXXXXXXXXXXXXXXXXXXHHHHHHHHHHHHHHHHHHH.HXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXS-S CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    Lig_chan  21 lverfspyewrepeeaaetveneftlsnslwfslgalvqqG.cdesprsvsgRivvavWwffvlillssYtAnLaafltvermqtpik 107
                  +e   + ew+ p+  +++++ +++++++++   g+++  G  + +p +v   iv+++ +ff+l+l +  + +L   l + + + +++
  KOO25141.1 596 AIESSGKNEWHPPHWLKNEASVTMKYMHAFFWGAGMITSLGeRHVNPVTVVELIVTCAIMFFALMLNAFVISSLNQALASMNAKAELT 683
                 56666788999998778889999999***************8889*********************9988888887777766666555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1109 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       633  (0.0353059); expected 358.6 (0.02)
Passed bias filter:                      440  (0.0245412); expected 358.6 (0.02)
Passed Vit filter:                        61  (0.00340231); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.77u 0.27s 00:00:01.04 Elapsed: 00:00:00.43
# Mc/sec: 7790.20
//
Query:       KOO25142.1  [L=222]
Description: aldo/keto reductase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.3e-29  102.5   0.0    5.9e-20   71.6   0.1    2.8  2  Aldo_ket_red  Aldo/keto reductase family


Domain annotation for each model (and alignments):
>> Aldo_ket_red  Aldo/keto reductase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.0   0.0   1.3e-10   2.4e-06      47     111 ..       3      64 ..       1      69 [. 0.93
   2 !   71.6   0.1   3.3e-24   5.9e-20     146     292 ..      82     203 ..      69     205 .. 0.90

  Alignments for each domain:
  == domain 1  score: 27.0 bits;  conditional E-value: 1.3e-10
                   HHHHHHHHHH...-TTTGGG-EEEEEE--SSSTTSSSS-HHHHHHHHHHHHHHHT-S-EEEEEE-S-- CS
  Aldo_ket_red  47 eellGealkk...srkkreeviiatKvdlrdaeiksglskeniresleeslkrLgtdyvDllllHrpd 111
                    e +G+a+++   ++++r e+++++K+       ++ +s ++++ +++++lk+Lg+dy+Dl+llH p+
    KOO25142.1   3 NEAIGHAIAAaaeRGVQRSELFVTSKL------GPRFYSGNEVDVEVRTMLKQLGLDYLDLVLLHHPE 64 
                   678999999999999************......9999****************************997 PP

  == domain 2  score: 71.6 bits;  conditional E-value: 3.3e-24
                   HHHHHHTTT--EEEEE-B-BTT-HHHHTTHHHHHHHTT-EEEEBSTTGGGTTGTTTSS---SSSCCC-------TS-HHHHHHHHHHHHHHHHTT-- CS
  Aldo_ket_red 146 lekakkkkkvkivavqveynllreleeegllelckkkgvpliaysplggGlltgkyqseedkedkeprkdlkrdertsknldaaeelselakehgvs 242
                   +e+++k +  +++++q++yn++ ++ +++++++c+k+ +++ a+sp++g +++  ++                         ++e l+++a++ g++
    KOO25142.1  82 IEALEKLGLAPVSVNQIQYNPWAPDWQQEVVDYCQKHSIAITAWSPFQGTMMQHASM------------------------FTVESLQQIARSSGKT 154
                   44555669999*************************************999994444........................5899************ PP

                   HHHHHHHHHTTSTT-SEEEE--SSHHHHHHHHGGG.G----HHHHHHHHHH CS
  Aldo_ket_red 243 laqlalryalsqpavgivipgasnieqlednldal.elklseeevaeldel 292
                   +aq++lr+a+  ++++++ipg+sn++++++nl+ + ++ ls+e++  +d++
    KOO25142.1 155 VAQVVLRWAV--QKGVVAIPGTSNPAHMDENLAGVySFALSTEQMGIIDAV 203
                   **********..9******************9876699**********986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (222 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       461  (0.0257125); expected 358.6 (0.02)
Passed bias filter:                      388  (0.0216409); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.26s 00:00:00.71 Elapsed: 00:00:00.43
# Mc/sec: 1537.66
//
Query:       KOO25143.1  [L=567]
Description: amp deaminase 3 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    6.7e-69  232.7   0.0    8.5e-69  232.4   0.0    1.1  1  A_deaminase  Adenosine/AMP deaminase


Domain annotation for each model (and alignments):
>> A_deaminase  Adenosine/AMP deaminase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  232.4   0.0   4.7e-73   8.5e-69       3     327 ..      47     444 ..      45     445 .. 0.97

  Alignments for each domain:
  == domain 1  score: 232.4 bits;  conditional E-value: 4.7e-73
                  -EEEEEEECCCSS-.HHHHHHHHHHHCHT..SS-SCCCCCCCCHCHCCHHHHCCHCCCHHCC.CHHHT.............................. CS
  A_deaminase   3 pKvdlHvHldgcln.pktllrlakkkgikeldekvveedeklltlqekfesLkeflydlsvd.vlvlh.............................. 68 
                   Kvd+H+Hl++ +  p++l +l + ++++   + ++++   +++l++ fe  k  ++dl  + ++++                               
   KOO25143.1  47 AKVDTHLHLSALMTsPELLAYLNEIYARDGHMPYDAKQTIGEMILAAGFEPGKTAIDDLRTQsTADMYrdfdefnaaftpfrskaladllfkpqilgg 144
                  59**********96266666777777888889999************************8762678889***************************** PP

                  .....................................................CCCCCCHHHHHHCCCCCHCTTCCCCCCCCSHHHHHHH-GC.STCC CS
  A_deaminase  69 .....................................................wlievvrllavekakdlakdfvkylevifsPlfeatagpq.lpel 112
                                                                         i+ +r + v k+++++++f + l+++f P feat +p+ ++ l
   KOO25143.1 145 rylkeiisrmadkaqqsnifleprvsvyarkygewaelgdwfetarpwhkhvlYAIQFPRVYHVWKKMKAINNFGELLNNFFGPMFEATLHPEkHENL 242
                  ************************************************************************************************** PP

                  HHHHCCCCCCCCCCHCCT-EEEEEECCETTTCCGHCCCHHHHHHCCCCCCCCCCCCC-TTSTTGGGHHHHHCCCCHTT-EEEEEESSSS-CHHHHHHH CS
  A_deaminase 113 evvlkvvdgfdsvedeskvkerlilvksrkpeewseeinelasyyrdytvvnldllndekiepaslflklraeagkstllltpHaGEagglehvveAl 210
                  + +lk+++ +d v++e   ++  ++++++   + ++ +n+++syy  y   nl  ln            +r+ +g +t++++pHaGEag+++h+++++
   KOO25143.1 243 AKLLKQIKCIDTVDNEAQ-DDPFFISEYPPATKYDRDQNPPYSYYTFYFWHNLRALN-----------AIRQDKGLNTFKFRPHAGEAGPPHHLASTF 328
                  ******************.**************************************...........9***************************** PP

                  HCS--SCECE-GGGGGSHHHHHHHHHCT-EEEE-HHHHCCCSST-TTTT-CHHHHHHTT-EEEE--BSCCCCT-S...HHHHHHHHHHHHT--HHHHH CS
  A_deaminase 211 lllkaerigHGvrlrkdpvLqyllalaqiplevcPlSNvalgafleyaenPlkeflerglnvslntDDPlqfgtt...LieeYaiaaqvfklseedla 305
                  l+  a+ i+HG++l ++pvLqyl++la  p+ v+P+SN  l  fl+ya+nP++  ++rgl+v+l tDDPlqf+++     eeY  a++++ l+  dl 
   KOO25143.1 329 LF--ANGISHGINLEHQPVLQYLYYLADFPISVSPISNACL--FLPYAKNPFPMMFKRGLRVTLTTDDPLQFHMSnqpQLEEYITAKHAWSLTMTDLS 422
                  **..*************************************..***********************************99****************** PP

                  HHHHHHHHCSSS-HHHHHHHCH CS
  A_deaminase 306 elarNsvkqsflsadekkklld 327
                  e+arNsv+ s + ++ +++l++
   KOO25143.1 423 EIARNSVLISSARHELREELIG 444
                  *******************997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (567 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       376  (0.0209716); expected 358.6 (0.02)
Passed bias filter:                      357  (0.0199119); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.54u 0.25s 00:00:00.79 Elapsed: 00:00:00.41
# Mc/sec: 4154.13
//
Query:       KOO25144.1  [L=2473]
Description: dynein heavy chain axonemal, partial [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   4.4e-151  502.4   0.0   6.5e-149  495.3   0.0    3.0  3  AAA_6            Hydrolytic ATP binding site of dynein motor 
   2.2e-126  422.2   0.0   5.9e-126  420.8   0.0    1.7  1  DHC_N2           Dynein heavy chain, N-terminal region 2
    5.3e-82  273.7   0.0    7.4e-80  266.7   0.0    3.3  2  AAA_7            P-loop containing dynein motor region
    1.2e-49  168.9   0.0    3.6e-49  167.4   0.0    1.9  1  AAA_8            P-loop containing dynein motor region D4
    8.3e-29  100.3   1.1    2.5e-28   98.7   0.1    2.5  2  Dynein_AAA_lid   Dynein heavy chain AAA lid domain
    8.3e-18   64.7   0.0    3.3e-06   27.2   0.0    5.4  4  AAA_5            AAA domain (dynein-related subfamily)
      1e-16   61.0   0.6    3.9e-16   59.1   0.6    2.1  1  AAA_lid_1        AAA+ lid domain
    5.5e-07   30.1   0.0      0.052   14.0   0.0    4.2  3  AAA              ATPase family associated with various cellul
    0.00022   21.6   0.0       0.57   10.5   0.0    3.7  3  AAA_16           AAA ATPase domain
    0.00076   19.8   0.1        2.5    8.5   0.0    3.6  2  RNA_helicase     RNA helicase
    0.00088   19.6   0.1       0.61   10.4   0.0    3.8  4  AAA_22           AAA domain
     0.0014   18.0   0.6     0.0062   16.0   0.6    2.2  1  EF-hand_1        EF hand
     0.0037   17.0   0.2        4.3    7.0   0.0    2.6  2  AAA_30           AAA domain
     0.0085   15.9   0.7      0.042   13.8   0.7    2.3  1  EF-hand_6        EF-hand domain
     0.0093   15.7   0.0       0.36   10.5   0.0    3.0  3  Sigma54_activat  Sigma-54 interaction domain
  ------ inclusion threshold ------
      0.013   14.6   0.4       0.18   10.8   0.0    2.7  3  T2SSE            Type II/IV secretion system protein
      0.046   13.7   0.0        1.8    8.6   0.0    2.8  2  AAA_14           AAA domain
      0.072   13.5   0.9        0.3   11.6   0.9    2.1  1  EF-hand_7        EF-hand domain pair
       0.08   12.9   0.7       0.21   11.5   0.0    2.1  1  ResIII           Type III restriction enzyme, res subunit
        0.1   12.5   0.3       0.67    9.9   0.0    2.4  2  NACHT            NACHT domain
       0.11   12.3   0.0       0.42   10.5   0.0    2.0  1  ATPase_2         ATPase domain predominantly from Archaea
       0.28   11.2   0.7        5.7    7.0   0.0    2.9  3  TsaE             Threonylcarbamoyl adenosine biosynthesis pro
       0.38   11.1   1.3         30    4.9   0.0    3.4  3  AAA_19           AAA domain
       0.51   10.1   2.0         32    4.2   0.0    3.1  3  AAA_11           AAA domain


Domain annotation for each model (and alignments):
>> AAA_6  Hydrolytic ATP binding site of dynein motor region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  495.3   0.0  8.7e-152  6.5e-149       1     327 []    1327    1653 ..    1327    1653 .. 1.00
   2 ?    1.7   0.0      0.13        98      38      56 ..    2014    2032 ..    1989    2057 .. 0.78
   3 ?    1.0   0.0      0.22   1.7e+02     192     255 ..    2193    2261 ..    2167    2284 .. 0.71

  Alignments for each domain:
  == domain 1  score: 495.3 bits;  conditional E-value: 8.7e-152
       AAA_6    1 YgyeYlgnserLviTpltdrcyltltqAlklklggapaGpagtGKtEtvkdLakalakqvvvfncsdqldykslgkifkGlaqsGaWgCfdeFnrie 97  
                  Yg+eYlg+++rLv+Tpltdrcy+tl+ Al+l lggap+GpagtGKtEt+kdL+ka+a+q++v+ncsd+ldy +++k+fkGla sGaW+CfdeFnrie
  KOO25144.1 1327 YGNEYLGLQGRLVVTPLTDRCYRTLMGALQLDLGGAPEGPAGTGKTETTKDLGKAIARQTIVMNCSDGLDYLAMAKFFKGLAASGAWACFDEFNRIE 1423
                  9************************************************************************************************ PP

       AAA_6   98 levLSvvaqqiktiqqalkekkkkfvfegkeiklnksvgifitmnpgyagrteLPdnLkalfRpvammvPdlelIaeimLfseGfkeakelakklvt 194 
                  levLSv+aqqi ti +  +++ k+f feg+++ l+ +++ fitmnpgyagr+eLPdnLk+lfR+vammvPd+++I e+mL+s+G+ ea+  a+k+v+
  KOO25144.1 1424 LEVLSVIAQQILTIIRGKAARVKEFDFEGSHLPLKMTCNSFITMNPGYAGRAELPDNLKVLFRTVAMMVPDYAMIGEVMLLSSGYLEARPCARKIVQ 1520
                  ************************************************************************************************* PP

       AAA_6  195 lykllseqlskqdhydfglralksvlkaagelkreepeeseeelllralrdvnlpklvaeDvplfkglisdlFpgvelpesdyeeleeaieevlkek 291 
                  +ykl+seqls+qdhyd+g+ra+++vl+aa +lk+  p+ +e  l+lr+++dvnlpk++++Dvplf+g++sdlFpgv+lpe dy  l+e+++ ++k++
  KOO25144.1 1521 TYKLCSEQLSSQDHYDYGMRAVMAVLRAAANLKQMFPDANEGILMLRSIIDVNLPKFLQHDVPLFEGITSDLFPGVKLPEPDYVLLKETCAWHCKND 1617
                  ************************************************************************************************* PP

       AAA_6  292 klqleekfvekviqlyetlkvrhgvmlvGetgsgKt 327 
                  +lql+e f+ k++qlye++ vrhg+m+vG ++++Kt
  KOO25144.1 1618 NLQLTELFFIKITQLYEMIIVRHGLMIVGYSYGAKT 1653
                  ***********************************8 PP

  == domain 2  score: 1.7 bits;  conditional E-value: 0.13
       AAA_6   38 aGpagtGKtEtvkdLakal 56  
                   Gp+gtGKt  v++L  al
  KOO25144.1 2014 VGPTGTGKTAYVQKLILAL 2032
                  7*********999997766 PP

  == domain 3  score: 1.0 bits;  conditional E-value: 0.22
       AAA_6  192 lvtlykllseql...skqdhydfglralksvlkaagelkreepeeseeelllra..lrdvnlpklvaeD 255 
                   + +yk +  +l    +++hy f+lr +  v++ +    +e+ e++ + +ll +  l +v   +l+++D
  KOO25144.1 2193 TMDMYKAAMLNLlptPSKSHYTFNLRDFARVVQGMLLSSKEDFEKPADLMLLWSheLFRVFYDRLTDDD 2261
                  4556666666653334799*************9888887777777777776654225555566666666 PP

>> DHC_N2  Dynein heavy chain, N-terminal region 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  420.8   0.0  7.9e-129  5.9e-126      10     394 ..     785    1182 ..     778    1185 .. 0.94

  Alignments for each domain:
  == domain 1  score: 420.8 bits;  conditional E-value: 7.9e-129
                  XXXXXXXXXXXXXXXXXXX.....XXXXXXXXXXXXXXXXXXXXXXXXXXXX.........XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
      DHC_N2   10 llkklwdlvsewqekleewkktpfkeldveeleeevkellkklkklpkalke.........wevakelkekieefkevlplieelrnpalrerHwke 97  
                  +   lw++v+++++ +++w+++p++ +d+e le+evk ++k   k+ k +++          +v ++lke+i  f+  lpl+ +l+n ++r+rHwk+
  KOO25144.1  785 PHLALWTMVQDFTTGYQSWMHGPMSAIDPEVLESEVKGMYKGNIKILKGFESdsnpkarnsLKVSETLKERIGAFQAKLPLVVCLTNRGMRDRHWKD 881 
                  6668*********************************999744444444444445555555************************************ PP

                  XXXXX..XXXXXXXX.XXXXXXXXXXX..XXXXXXXXXXXXXX-HHHHHHHHHHHHHHTS---EEEE-SSS.TEEE..THHHHHHHHHHHHHHHHTC CS
      DHC_N2   98 lsellgvikdpdseesltlgdllelgl..leeeieeisekAtkEaslekalkkieeewkelefelteykdsgvfilkgvdeiielledhivklqsmk 192 
                  +s+ +g  +++++++ +tl+++l+l+l  ++e + e++ +A+kE+slekal+k+ ++w+ le++++ey+d+g+fi++g +e+++ll+dhivk q+m+
  KOO25144.1  882 ISKRTG--QNISPNAATTLDQMLKLKLdkHQEVLDEVAGNASKEFSLEKALDKMLKDWQPLEYSMKEYRDTGTFIMSGSEEVQALLDDHIVKSQTMQ 976 
                  *****8..55788899***********988******************************************************************* PP

                  SSSTT..THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT.THHHHHHTHHHHHHHHHHHHHHHHHHHHHHTTSGGGG...STTHHHHHHHHHH CS
      DHC_N2  193 sspyvkpfeeeveewekklsrlqeildewlkvQrkWlyLepifssedirkqlpeeakrFksvdkewkkimkevskdpnvleatskpgllekleelne 289 
                  +sp +kpfee++++w +kl  +q+++d wlkvQ  W yLepif sedi++q+pee+k Fk+ d  w++  k+v kd +vl ++++pg+le+ +e + 
  KOO25144.1  977 GSPAIKPFEERARNWSNKLVLIQDLIDIWLKVQGVWQYLEPIFGSEDIMRQMPEEGKLFKKQDGMWRDNNKKVLKDVRVLVVADIPGMLESYREQHA 1073
                  ****************************************************************************9******************** PP

                  HHHHHHHHHHHHHHHHHHHSTTHHHH-HHHHHHHHHTTTTSGGGHHHHHHHHSSEEEESE.....EEEEEETTS-EEEEE......E.EEEHHHHHH CS
      DHC_N2  290 qlekiqksLneyLekkRlafpRFyFlsddeLleilsqskdpsavqphlkkcFegiaslefeekkeitgmiskegEkvelse....argnveeWLnel 382 
                   le +qk+Ln+yLe+kRl+fpRF+Fls+deLleils++kdp +vqphl kcF+gi +l+f e + i+gm+s+egEkv++       +++ve WL+ +
  KOO25144.1 1074 MLEIVQKGLNDYLEMKRLYFPRFFFLSNDELLEILSETKDPLRVQPHLGKCFDGIGKLDFGEGNIIHGMFSAEGEKVSFGGetitPSSMVEAWLTLV 1170
                  *******************************************************************************977898777********* PP

                  HHHHHHHHHHHH CS
      DHC_N2  383 eeemkktlkell 394 
                  e+ m k++ ++ 
  KOO25144.1 1171 EAFMFKSIDRVS 1182
                  *******98875 PP

>> AAA_7  P-loop containing dynein motor region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.0   0.0     0.086        64      40      63 ..    1365    1388 ..    1357    1396 .. 0.84
   2 !  266.7   0.0   9.9e-83   7.4e-80       2     180 ..    1977    2155 ..    1976    2156 .. 0.98

  Alignments for each domain:
  == domain 1  score: 3.0 bits;  conditional E-value: 0.086
       AAA_7   40 GptGtGKtviikdllkkldkekyl 63  
                  Gp+GtGKt ++kdl k++ +++++
  KOO25144.1 1365 GPAGTGKTETTKDLGKAIARQTIV 1388
                  9*************9999955544 PP

  == domain 2  score: 266.7 bits;  conditional E-value: 9.9e-83
       AAA_7    2 eideeakfseilVptvdtvrysyllelllknkkpvllvGptGtGKtviikdllkkldkekylsltinfsaqtsanqlqdiiesklekrrkgvygPpg 98  
                  +i+++a f++i+Vpt dt+rys+ll+ llk++kpvl+vGptGtGKt+++++l+ +ld ++++s+++nfsaqt+ nq qdii++kl+kr+kgv+gPp 
  KOO25144.1 1977 KIPATATFETITVPTLDTARYSFLLDRLLKSDKPVLYVGPTGTGKTAYVQKLILALDAKEWSSIFVNFSAQTHCNQAQDIIDAKLDKRKKGVFGPPI 2073
                  68999******************************************************************************************** PP

       AAA_7   99 gkklvvFvDDlnmpakekygaqppiellRqlldyggwYdrkklefkeikdvqlvaamgppgggrneitpRllrhfnvlaite 180 
                  gk+ v+FvDDlnmpa e+ygaqppie+lRq++d+ gwYdrk+l f++++d+++ aamgppgggrn+i+pR++rhfn++a+++
  KOO25144.1 2074 GKRAVIFVDDLNMPALETYGAQPPIEILRQWMDHDGWYDRKELVFRKLVDLSFFAAMGPPGGGRNSISPRYMRHFNIIAYST 2155
                  ******************************************************************************9876 PP

>> AAA_8  P-loop containing dynein motor region D4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  167.4   0.0   4.8e-52   3.6e-49       1     125 [.    2348    2472 ..    2348    2473 .] 0.99

  Alignments for each domain:
  == domain 1  score: 167.4 bits;  conditional E-value: 4.8e-52
       AAA_8    1 ldLvlfedaiehlarilRvlrqprghaLlvGvgGsGrqsltkLAafiaelelfqievtkkykekefredlkkllkkagikqkevvfllsdnqiiees 97  
                  ++Lvlf  a+eh+++i+Rvl++prg+aLl GvgGsGrqs+t+LAa+++++e+f+iev+k+y+  ++red+kk+lk+ag+++k +vfl++d+qi++e+
  KOO25144.1 2348 MKLVLFLFAVEHVCKISRVLQMPRGNALLAGVGGSGRQSVTRLAAHLSDMEVFSIEVSKSYSLVDWREDIKKVLKRAGMEGKATVFLFADTQIKQEA 2444
                  89*********************************************************************************************** PP

       AAA_8   98 fledinnlLntGevpnLfskeekeeiie 125 
                   ledin lLn GevpnLf++ ek+ei +
  KOO25144.1 2445 YLEDINGLLNAGEVPNLFENSEKAEIAD 2472
                  *************************986 PP

>> Dynein_AAA_lid  Dynein heavy chain AAA lid domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.2       5.8   4.3e+03       8      50 ..     580     621 ..     576     636 .. 0.67
   2 !   98.7   0.1   3.4e-31   2.5e-28       1     128 [.    1821    1968 ..    1821    1969 .. 0.82

  Alignments for each domain:
  == domain 1  score: -2.3 bits;  conditional E-value: 5.8
  Dynein_AAA_lid   8 lvepclefvrkkckeivpvtdlnlvqslcrllealldefeeke 50 
                     l++++ e + +k+++ v+   ++ +++lc+ +  ++ ++ ++ 
      KOO25144.1 580 LMTRATELM-EKMRHSVKANFMATCHNLCSRYMDIFVRLGQHP 621
                     556666666.888888888899988888877766666644443 PP

  == domain 2  score: 98.7 bits;  conditional E-value: 3.4e-31
  Dynein_AAA_lid    1 leelfeklvepclefvrkkcke.....ivpvtdlnlvqslcrllealldefeekeeesadeeleeeeleevleklflfalvWSiGatldedsr 88  
                      l++lf +lv+pcl+f+r  ck      i ++ ++  v+ l++l++al + + +        ++ e+el +++e+lflf+l+WS+++ +  dsr
      KOO25144.1 1821 LNNLFGWLVPPCLRFCRIACKAtlevgIQATDEVTRVRALFKLFTALTHMLDDPAT----AKAVEKELGAWVENLFLFSLIWSVAGVIVGDSR 1909
                      689*****************994444456788889999999999998888555543....5788999************************** PP

  Dynein_AAA_lid   89 ekfdeflrellee...................alklppeegtvyDyffdketgkWkpWe 128 
                       kfdeflr+++++                   a+ lp+ e t+y+y+f++et+kW  W 
      KOO25144.1 1910 PKFDEFLRQMCAGkpprgydkvdgvfgtaqpwAKFLPEGEATCYEYMFNQETHKWMLWV 1968
                      ************5566665555555555555544455*********************6 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.8   0.0   0.00012     0.091       6     136 ..    1365    1483 ..    1364    1485 .. 0.77
   2 !   13.5   0.0   7.2e-05     0.053       2     108 ..    1642    1766 ..    1641    1787 .. 0.85
   3 !   27.2   0.0   4.4e-09   3.3e-06       2     136 ..    2011    2146 ..    2010    2148 .. 0.92
   4 ?    2.5   0.0      0.17   1.3e+02       2      37 ..    2374    2409 ..    2373    2452 .. 0.84

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 0.00012
                  --SSSSHHHHHHHGGGGBS--EEEEE--TT--HHHHH--B--.........--------G-SEEEEESGGG--HHHHHHHHHHHHSSEEE..-SSSE CS
       AAA_5    6 GppGtgKselaerlaaalnreveyvqltrdtteedlkgrreikngttslvdsplvraaregeilvlDEveraesevlnsLlslleerrllleeggel 102 
                  Gp GtgK+e ++ l +a+ r++ ++++++++ +  +    +          +     a +g+ +++DE++r+e evl++  + + +  +  + + ++
  KOO25144.1 1365 GPAGTGKTETTKDLGKAIARQTIVMNCSDGLDYLAMAKFFK----------G----LAASGAWACFDEFNRIELEVLSVIAQQILTIIRGKAARVKE 1447
                  9****************************999887776666..........2....3459999999****999999888766665555555555555 PP

                  EE---........-EEEEEESS--.-TT-TTHHHHT CS
       AAA_5  103 vkakndd.ller.frviatanpldrslnelspalrs 136 
                   +++     l+   + + t+np + +++el  +l+ 
  KOO25144.1 1448 FDFEGSHlPLKMtCNSFITMNPGYAGRAELPDNLKV 1483
                  555555444444689999999999888888888875 PP

  == domain 2  score: 13.5 bits;  conditional E-value: 7.2e-05
                  EEEE--SSSSHHHHHHHGGGGB..........S--EEEEE--TT--HHHHH--B--.........--------.............G-SEEEEESGG CS
       AAA_5    2 vlLvGppGtgKselaerlaaal..........nreveyvqltrdtteedlkgrreikngttslvdsplvraar.............egeilvlDEve 75  
                  +++vG +  +K+++ + laaal          ++   yv++++++t  +l g+ +  + t ++ d++l    r             + ++++++ ++
  KOO25144.1 1642 LMIVGYSYGAKTMMYRTLAAALtemkargapqQAVSYYVLNPKSITMGQLYGQFD--PVTHEWGDGILAVTYRyaaqqeklynnpdRQWVMFDGPLD 1736
                  678888888**********************9999999*****************..6**********988889999********999999999999 PP

                  G--HHHHHHHHHHHHSSEEE..-SSSEEE---. CS
       AAA_5   76 raesevlnsLlslleerrllleeggelvkaknd 108 
                       +++ ++++l++++ l   +ge ++ ++ 
  KOO25144.1 1737 ---AIWIENMNTVLDDNKKLCLMSGEMIGMSSV 1766
                  ...99**********999888888777776664 PP

  == domain 3  score: 27.2 bits;  conditional E-value: 4.4e-09
                  EEEE--SSSSHHHHHHHGGGGB...S--EEEEE--TT--HHHHH--B--.........--------G-SEEEEESGGG--HHHHHHHHHHHHSSEEE CS
       AAA_5    2 vlLvGppGtgKselaerlaaal...nreveyvqltrdtteedlkgrreikngttslvdsplvraaregeilvlDEveraesevlnsLlslleerrll 95  
                  vl vGp+GtgK+  +++l  al   +++   v+++++t  ++ +  ++   +  +++++++   + + +++++D++++   e+ ++  +++e  r +
  KOO25144.1 2011 VLYVGPTGTGKTAYVQKLILALdakEWSSIFVNFSAQTHCNQAQDIID--AKLDKRKKGVFGPPIGKRAVIFVDDLNMPALETYGAQ-PPIEILRQW 2104
                  7889********************************************..68899999****************************9.888988888 PP

                  ..-SSSEEE---.......-EEEEEESS--.-TT-TTHHHHT CS
       AAA_5   96 leeggelvkakndd.llerfrviatanpldrslnelspalrs 136 
                  ++  g++ +++  +  l +++++a++ p+ +++n++sp+  +
  KOO25144.1 2105 MDHDGWYDRKELVFrKLVDLSFFAAMGPPGGGRNSISPRYMR 2146
                  8999999999997766666******************98766 PP

  == domain 4  score: 2.5 bits;  conditional E-value: 0.17
                  EEEE--SSSSHHHHHHHGGGGBS--EEEEE--TT-- CS
       AAA_5    2 vlLvGppGtgKselaerlaaalnreveyvqltrdtt 37  
                   lL G  G+g+ ++++  a++   ev+ +  +++++
  KOO25144.1 2374 ALLAGVGGSGRQSVTRLAAHLSDMEVFSIEVSKSYS 2409
                  589******************999999999888665 PP

>> AAA_lid_1  AAA+ lid domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.1   0.6   5.2e-19   3.9e-16       1      82 [.    2189    2271 ..    2189    2291 .. 0.86

  Alignments for each domain:
  == domain 1  score: 59.1 bits;  conditional E-value: 5.2e-19
   AAA_lid_1    1 lvaaalalhkkiaatflptaikfhyvfnlrdlsnifqgllfssaevlkapldlirlylheservygdkmveekdlell.ekvt 82  
                  ++aa+++++k     +lpt  k hy fnlrd++ + qg+l ss e +  p dl+ l+ he  rv+ d++ ++ d   + e+++
  KOO25144.1 2189 IIAATMDMYKAAMLNLLPTPSKSHYTFNLRDFARVVQGMLLSSKEDFEKPADLMLLWSHELFRVFYDRLTDDDDRLWFiEQMK 2271
                  6899********************************************************************99644313443 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.6   0.0    0.0063       4.7       5      35 ..    1365    1395 ..    1364    1427 .. 0.90
   2 !   14.0   0.0     7e-05     0.052       1      68 [.    2011    2085 ..    2011    2107 .. 0.74
   3 ?    3.0   0.0      0.17   1.3e+02       2      63 ..    2375    2434 ..    2374    2439 .. 0.85

  Alignments for each domain:
  == domain 1  score: 7.6 bits;  conditional E-value: 0.0063
                  SSTTSSHHHHHHHHHHHHTHEEEEEETTTCS CS
         AAA    5 GppGtGKTllakavakelgvefleisgsell 35  
                  Gp GtGKT + k + k + ++ + +++s+ l
  KOO25144.1 1365 GPAGTGKTETTKDLGKAIARQTIVMNCSDGL 1395
                  9*************************99876 PP

  == domain 2  score: 14.0 bits;  conditional E-value: 7e-05
                  EEEESSTTSSHHHHHHHHHHHHTHE.....EEEEETTTCSSSSTTHHHHHHHHHHHHHHHTS......TSEEEEEETGG CS
         AAA    1 vllyGppGtGKTllakavakelgve.....fleisgsellskyvgesekkirelfkeakeka......kpsilfiDEid 68  
                  vl +Gp GtGKT+ ++ ++  l+++     f+++s+ + +++    +++ i + +++ k+        k  ++f+D++ 
  KOO25144.1 2011 VLYVGPTGTGKTAYVQKLILALDAKewssiFVNFSAQTHCNQ----AQDIIDAKLDKRKKGVfgppigKRAVIFVDDLN 2085
                  6889*************9999854444444999999999944....4444455555433333666786669*****985 PP

  == domain 3  score: 3.0 bits;  conditional E-value: 0.17
                  EEESSTTSSHHHHHHHHHHHHTHEEEEEETTTCSSSSTTHHHHHHHHHHHHHHHTSTSEEEE CS
         AAA    2 llyGppGtGKTllakavakelgvefleisgsellskyvgesekkirelfkeakekakpsilf 63  
                  ll G  G G+ ++ +  a+ +++e+++i++s+     + +  ++i++++k+a  + k ++++
  KOO25144.1 2375 LLAGVGGSGRQSVTRLAAHLSDMEVFSIEVSKSY--SLVDWREDIKKVLKRAGMEGKATVFL 2434
                  899*****************************99..77889999*****9997666344444 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.7   0.0     0.024        18      31      63 ..    1365    1394 ..    1364    1476 .. 0.62
   2 !   10.5   0.0   0.00076      0.57      15      59 ..    2000    2049 ..    1993    2066 .. 0.72
   3 ?   -0.5   0.0         2   1.5e+03      25      91 ..    2372    2430 ..    2359    2460 .. 0.62

  Alignments for each domain:
  == domain 1  score: 5.7 bits;  conditional E-value: 0.024
      AAA_16   31 GesGvGKsslvrellralekdggiflrgkcdql 63  
                  G++G+GK+   + l +a+ ++    +  +c + 
  KOO25144.1 1365 GPAGTGKTETTKDLGKAIARQT---IVMNCSDG 1394
                  9*******************93...33333333 PP

  == domain 2  score: 10.5 bits;  conditional E-value: 0.00076
      AAA_16   15 alervrsgrpelvllsGesGvGKsslvrellralekd..ggif....lrgk 59  
                  +l+r+ +++   vl +G+ G+GK++ v++l  al ++    if    ++++
  KOO25144.1 2000 LLDRLLKSD-KPVLYVGPTGTGKTAYVQKLILALDAKewSSIFvnfsAQTH 2049
                  778888888.688999***********999988888844334423333333 PP

  == domain 3  score: -0.5 bits;  conditional E-value: 2
      AAA_16   25 elvllsGesGvGKsslvrellralekdggiflrgkcdqlesaipysalaqalareellrqlldeaes 91  
                  ++ ll G  G+G  s+ r ++ +l++ +++ ++     +     ++ + + + + ++l+  + e ++
  KOO25144.1 2372 GNALLAGVGGSGRQSVTRLAA-HLSDMEVFSIEVSKSYS-----LVDWREDI-K-KVLKRAGMEGKA 2430
                  788999999999999998888.66665433333332222.....23455555.3.444444444444 PP

>> RNA_helicase  RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.9   0.0     0.011       8.2       5      62 ..    1365    1423 ..    1364    1446 .. 0.66
   2 !    8.5   0.0    0.0034       2.5       2      45 ..    2012    2051 ..    2011    2056 .. 0.77

  Alignments for each domain:
  == domain 1  score: 6.9 bits;  conditional E-value: 0.011
  RNA_helicase    5 GpsgeGKStlakeLakallkkl..klkkkdsvysrnpeddfwdgYt.gqevvvidDfgqvk 62  
                    Gp+g+GK+ ++k+L ka++++    +   ++     +  +f++g   + +  ++d+f++++
    KOO25144.1 1365 GPAGTGKTETTKDLGKAIARQTivMNC--SDGLDYLAMAKFFKGLAaSGAWACFDEFNRIE 1423
                    9*****************976633222..22222235566666666555556666666655 PP

  == domain 2  score: 8.5 bits;  conditional E-value: 0.0034
  RNA_helicase    2 wlyGpsgeGKStlakeLakallkklklkkkdsvysrnpeddfwd 45  
                    + +Gp+g+GK+ ++++L+ al      k+++s++++ +++++++
    KOO25144.1 2012 LYVGPTGTGKTAYVQKLILALD----AKEWSSIFVNFSAQTHCN 2051
                    568*************999998....455677777766666665 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.8   0.0     0.084        63      12      49 ..    1365    1393 ..    1364    1409 .. 0.84
   2 ?   -1.7   0.0       4.2   3.1e+03      18      57 ..    1652    1692 ..    1641    1701 .. 0.63
   3 !   10.4   0.0   0.00081      0.61       8      51 ..    2011    2048 ..    2003    2078 .. 0.78
   4 ?   -1.9   0.0       4.9   3.6e+03       6      70 ..    2372    2430 ..    2369    2456 .. 0.68

  Alignments for each domain:
  == domain 1  score: 3.8 bits;  conditional E-value: 0.084
      AAA_22   12 GesGtGKTtllrrlleqldeeakaeeerpevvfvtlps 49  
                  G++GtGKT + + l +            ++++ ++++ 
  KOO25144.1 1365 GPAGTGKTETTKDLGKAI---------ARQTIVMNCSD 1393
                  9************99988.........67777777765 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 4.2
      AAA_22   18 KTtllrrlleqldeeakaeeerpevvfvtlpsst..sskdll 57  
                  KT+ +r+l+  l+e  ka+ ++ + v++++ +++  +  +l+
  KOO25144.1 1652 KTMMYRTLAAALTE-MKARGAPQQAVSYYVLNPKsiTMGQLY 1692
                  9*********9964.455555555554433333324666665 PP

  == domain 3  score: 10.4 bits;  conditional E-value: 0.00081
      AAA_22    8 lvvtGesGtGKTtllrrlleqldeeakaeeerpevvfvtlpsst 51  
                  ++ +G++GtGKT  +++l   ld+       + + +fv+ +++t
  KOO25144.1 2011 VLYVGPTGTGKTAYVQKLILALDAK------EWSSIFVNFSAQT 2048
                  6679******************876......6666777766666 PP

  == domain 4  score: -1.9 bits;  conditional E-value: 4.9
      AAA_22    6 gilvvtGesGtGKTtllrrlleqldeeakaeeerpevvfvtlpsst...sskdllrellralglelka 70  
                  g  ++ G  G+G+  + r  ++           + ev+++++++s    ++++  +++l+  g e+ka
  KOO25144.1 2372 GNALLAGVGGSGRQSVTRLAAHLS---------DMEVFSIEVSKSYslvDWREDIKKVLKRAGMEGKA 2430
                  556677777777777777666666.........99999999999995556666666666655555554 PP

>> EF-hand_1  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.6   8.3e-06    0.0062       1      27 [.    2281    2307 ..    2281    2309 .. 0.91

  Alignments for each domain:
  == domain 1  score: 16.0 bits;  conditional E-value: 8.3e-06
                  HHHHHHHHHTTTSSSEEEHHHHHHHHH CS
   EF-hand_1    1 elkeiFrefDkDgdGkIdfeEfkellk 27  
                  e++++F+efD++ +G +d ++ + ll 
  KOO25144.1 2281 EMDKLFKEFDTNSNGEVDDDDVRYLLY 2307
                  789******************999886 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.9   0.4    0.0064       4.8      24      45 ..    1364    1385 ..    1359    1414 .. 0.82
   2 !    7.0   0.0    0.0057       4.3      12      46 ..    2003    2036 ..    1998    2056 .. 0.78

  Alignments for each domain:
  == domain 1  score: 6.9 bits;  conditional E-value: 0.0064
      AAA_30   24 tGpAGtGKttalkalreaweaa 45  
                  +GpAGtGKt + k l +a++++
  KOO25144.1 1364 EGPAGTGKTETTKDLGKAIARQ 1385
                  7*************98888876 PP

  == domain 2  score: 7.0 bits;  conditional E-value: 0.0057
      AAA_30   12 alltsgdrvavltGpAGtGKttalkalreaweaag 46  
                  +ll+s++  ++ +Gp GtGKt  +++l  a++a++
  KOO25144.1 2003 RLLKSDK-PVLYVGPTGTGKTAYVQKLILALDAKE 2036
                  5666665.8999************99988887775 PP

>> EF-hand_6  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.8   0.7   5.6e-05     0.042       1      26 [.    2281    2306 ..    2281    2308 .. 0.91

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 5.6e-05
   EF-hand_6    1 elreaFklfDkdgdGkidaeElrkal 26  
                  e++++Fk+fD++ +G++d +++r +l
  KOO25144.1 2281 EMDKLFKEFDTNSNGEVDDDDVRYLL 2306
                  6899*****************99776 PP

>> Sigma54_activat  Sigma-54 interaction domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.0   0.0      0.41   3.1e+02      28      71 ..    1364    1404 ..    1346    1416 .. 0.84
   2 !   10.5   0.0   0.00048      0.36      15      78 ..    2001    2069 ..    1993    2077 .. 0.71
   3 ?   -3.4   0.0       9.1   6.8e+03      15      44 ..    2363    2393 ..    2358    2398 .. 0.74

  Alignments for each domain:
  == domain 1  score: 1.0 bits;  conditional E-value: 0.41
                       ECSTTSSHHHHHHHHHHHSTTTTS-EEEEETTTS-TTCHHHHHH CS
  Sigma54_activat   28 tGesGtGKellaraiheaskrkekpfvavncaaipeelleseLF 71  
                       +G  GtGK+   + + +a  r   + + +nc++  + l ++++F
       KOO25144.1 1364 EGPAGTGKTETTKDLGKAIAR---QTIVMNCSDGLDYLAMAKFF 1404
                       6999*****999998877775...56899***999999999999 PP

  == domain 2  score: 10.5 bits;  conditional E-value: 0.00048
                       HHHHCTSSS-EEEECSTTSSHHHHHHHHHHHSTTTTS-EEEEETTTS.....-TTCHHHHHHEBSSSSS CS
  Sigma54_activat   15 ikkvaktdlsvlitGesGtGKellaraiheaskrkekpfvavncaai.....peelleseLFGhekGaF 78  
                       ++++ k+d +vl +G +GtGK+   +++  a + ke + + vn +a      ++++++++L   +kG F
       KOO25144.1 2001 LDRLLKSDKPVLYVGPTGTGKTAYVQKLILALDAKEWSSIFVNFSAQthcnqAQDIIDAKLDKRKKGVF 2069
                       5688999***************99988877555555544444444321233356677777777777766 PP

  == domain 3  score: -3.4 bits;  conditional E-value: 9.1
                       HHHHCTSS.S-EEEECSTTSSHHHHHHHHHH CS
  Sigma54_activat   15 ikkvaktd.lsvlitGesGtGKellaraihe 44  
                       i++v +++  + l+ G  G+G++ + r+  +
       KOO25144.1 2363 ISRVLQMPrGNALLAGVGGSGRQSVTRLAAH 2393
                       566666654789***********99987655 PP

>> T2SSE  Type II/IV secretion system protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.1   0.3       8.8   6.6e+03     136     154 ..    1365    1383 ..    1365    1389 .. 0.77
   2 ?   10.8   0.0   0.00024      0.18     100     164 ..    1979    2043 ..    1968    2064 .. 0.78
   3 ?    0.2   0.0      0.41   3.1e+02     116     146 ..    2361    2388 ..    2317    2403 .. 0.78

  Alignments for each domain:
  == domain 1  score: -4.1 bits;  conditional E-value: 8.8
       T2SSE  136 GgTgsGKttllyallkein 154 
                  G+ g+GKt ++  l k i+
  KOO25144.1 1365 GPAGTGKTETTKDLGKAIA 1383
                  99******99877766665 PP

  == domain 2  score: 10.8 bits;  conditional E-value: 0.00024
       T2SSE  100 akeltlddlgaeealkekiaevlrkavrerglilvsGgTgsGKttllyallkeinksderivtvE 164 
                  ++  t++++ +   ++++++ +l + +++ + +l  G+Tg+GKt  +  l+  +++++   + v 
  KOO25144.1 1979 PATATFETITVPTLDTARYSFLLDRLLKSDKPVLYVGPTGTGKTAYVQKLILALDAKEWSSIFVN 2043
                  44557788888888889999999************************999999988866555555 PP

  == domain 3  score: 0.2 bits;  conditional E-value: 0.41
       T2SSE  116 ekiaevlrkavrerglilvsGgTgsGKttll 146 
                   ki++vl+ +   rg+ l++G  gsG+  ++
  KOO25144.1 2361 CKISRVLQMP---RGNALLAGVGGSGRQSVT 2388
                  68999*****...*************86444 PP

>> AAA_14  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.5   0.0      0.37   2.8e+02       9      76 ..    1365    1422 ..    1364    1462 .. 0.71
   2 ?    8.6   0.0    0.0024       1.8       2      72 ..    2008    2083 ..    2007    2092 .. 0.76

  Alignments for each domain:
  == domain 1  score: 1.5 bits;  conditional E-value: 0.37
      AAA_14    9 GaRrvGKTtllkqlikellvkkesilyinldderdkkladpekllelileklkeekktylflDEiqev 76  
                  G+  +GKT   k+l k      ++++ +n+ d  d+ +       ++++ +  +    + ++DE  ++
  KOO25144.1 1365 GPAGTGKTETTKDLGKAIA---RQTIVMNCSDGLDYLAM-----AKFFKGL-AA-SGAWACFDEFNRI 1422
                  88899*********98877...9*******997775322.....2334443.33.5678899998887 PP

  == domain 2  score: 8.6 bits;  conditional E-value: 0.0024
      AAA_14    2 rkilvitGaRrvGKTtllkqlikellvkkesilyinldderdkkladpekllelileklke.......ekktylflDE 72  
                  +k+++ +G+  +GKT ++++li  l +k+ s +++n+  ++  ++a+   ++++ l+k k+        k+ ++f D 
  KOO25144.1 2008 DKPVLYVGPTGTGKTAYVQKLILALDAKEWSSIFVNFSAQTHCNQAQD--IIDAKLDKRKKgvfgppiGKRAVIFVDD 2083
                  5788999***************88889999********9888665533..5555555433346667776777777776 PP

>> EF-hand_7  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.9    0.0004       0.3      35      69 ..    2257    2305 ..    2231    2307 .. 0.67

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 0.0004
   EF-hand_7   35 a..........gegsklsd....eelellfkefDtdkdGvisfdEFlkl 69  
                             + +++l+      e+++lfkefDt+++G+++ d+ ++l
  KOO25144.1 2257 LtddddrlwfiEQMKVLTVnhfnVEMDKLFKEFDTNSNGEVDDDDVRYL 2305
                  455555555555555666633334699**************98888776 PP

>> ResIII  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   0.00029      0.21      22      58 ..    2006    2042 ..    1968    2060 .. 0.82

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.00029
                  .TTSEEEEEESTTSTHHHHHHHHHHHH-S.....-EE CS
      ResIII   22 krdkrglikmaTGtGKTlvaaklierllkkgkeekfl 58  
                  k dk +l + +TGtGKT    kli +l  k++ + f+
  KOO25144.1 2006 KSDKPVLYVGPTGTGKTAYVQKLILALDAKEWSSIFV 2042
                  78999***********************998865544 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.1       2.5   1.9e+03       6      27 ..    1364    1385 ..    1364    1389 .. 0.81
   2 ?    9.9   0.0    0.0009      0.67       2      31 ..    2010    2039 ..    2009    2065 .. 0.73

  Alignments for each domain:
  == domain 1  score: -1.3 bits;  conditional E-value: 2.5
                  EC-TTTCHHHHHHHHHHHHCTS CS
       NACHT    6 qGeaGsGKTtLlqklalawaeg 27  
                  +G+aG GKT   + l  a+a++
  KOO25144.1 1364 EGPAGTGKTETTKDLGKAIARQ 1385
                  69*******9888887777765 PP

  == domain 2  score: 9.9 bits;  conditional E-value: 0.0009
                  CEEEEC-TTTCHHHHHHHHHHHHCTS-SCC CS
       NACHT    2 lvilqGeaGsGKTtLlqklalawaegklpq 31  
                  +v+  G+ G GKT+ +qkl+la+ +++  +
  KOO25144.1 2010 PVLYVGPTGTGKTAYVQKLILALDAKEWSS 2039
                  57789****************998887555 PP

>> ATPase_2  ATPase domain predominantly from Archaea
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.0   0.00056      0.42      20      87 ..    2008    2074 ..    2000    2092 .. 0.78

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00056
    ATPase_2   20 neiyfiYGpegsGKtaLlkeiienledkdkyviyyialreesiskldefieeeeekkklekalgiavp 87  
                  +++++  Gp g GKta ++++i  l+ k+   i+++   +   +++++ i+ + +k+  + ++g +++
  KOO25144.1 2008 DKPVLYVGPTGTGKTAYVQKLILALDAKEWSSIFVNFSAQTHCNQAQDIIDAKLDKR-KKGVFGPPIG 2074
                  4555556*****************************999999999999887655555.4455555555 PP

>> TsaE  Threonylcarbamoyl adenosine biosynthesis protein TsaE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.6   0.2      0.69   5.2e+02      25      45 ..    1364    1384 ..    1350    1390 .. 0.86
   2 ?    7.0   0.0    0.0076       5.7      19      48 ..    2008    2037 ..    1991    2044 .. 0.77
   3 ?   -2.5   0.0       6.6   4.9e+03      81     109 ..    2395    2423 ..    2389    2432 .. 0.69

  Alignments for each domain:
  == domain 1  score: 0.6 bits;  conditional E-value: 0.69
                  EESTTSSHHHHHHHHHHHTT- CS
        TsaE   25 eGdLGaGKTtlvrglakalgv 45  
                  eG+ G+GKT  ++ l ka+  
  KOO25144.1 1364 EGPAGTGKTETTKDLGKAIAR 1384
                  6999**********9998754 PP

  == domain 2  score: 7.0 bits;  conditional E-value: 0.0076
                  TEEEEEEESTTSSHHHHHHHHHHHTT---- CS
        TsaE   19 gdvilLeGdLGaGKTtlvrglakalgveev 48  
                   + +l  G+ G+GKT+ v++l+ al+ +e 
  KOO25144.1 2008 DKPVLYVGPTGTGKTAYVQKLILALDAKEW 2037
                  4459999***************99987654 PP

  == domain 3  score: -2.5 bits;  conditional E-value: 6.6
                  HHCTTCCCCSTSCEEEEETGGGGCCCS-S CS
        TsaE   81 eelgleeyleeeavvlvEWpekleellpe 109 
                   ++++  +  ++++ lv W e ++++l++
  KOO25144.1 2395 SDMEVFSIEVSKSYSLVDWREDIKKVLKR 2423
                  455555543355799*******9998865 PP

>> AAA_19  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.1       3.3   2.4e+03      53      78 ..     583     642 ..     551     719 .. 0.66
   2 ?    2.4   0.2      0.24   1.8e+02      17      36 ..    1365    1384 ..    1364    1392 .. 0.81
   3 ?    4.9   0.0      0.04        30      10      38 ..    2008    2036 ..    2003    2066 .. 0.76

  Alignments for each domain:
  == domain 1  score: -1.3 bits;  conditional E-value: 3.3
      AAA_19  53 rAakelrerlaalgae.atTiHrlal.................................l 78 
                 rA++ +++  ++++a+   T+H+l                                   l
  KOO25144.1 583 RATELMEKMRHSVKANfMATCHNLCSrymdifvrlgqhpntdeemvelenflaestgmlL 642
                 444444444444444478899999767888887777776666666666555555555552 PP

  == domain 2  score: 2.4 bits;  conditional E-value: 0.24
      AAA_19   17 aGpGtGKTrvlkhivallve 36  
                  +++GtGKT+++k   + + +
  KOO25144.1 1365 GPAGTGKTETTKDLGKAIAR 1384
                  789*******9987776665 PP

  == domain 3  score: 4.9 bits;  conditional E-value: 0.04
      AAA_19   10 ekvllvtaGpGtGKTrvlkhivallvelg 38  
                  +k++l +++ GtGKT  +++ +  l + +
  KOO25144.1 2008 DKPVLYVGPTGTGKTAYVQKLILALDAKE 2036
                  5788999***********99987776555 PP

>> AAA_11  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.2   0.8      0.17   1.3e+02      92     208 ..     616     747 ..     576     757 .. 0.67
   2 ?   -0.3   0.0      0.98   7.3e+02      23      41 ..    1364    1382 ..    1361    1400 .. 0.81
   3 ?    4.2   0.0     0.042        32      13      42 ..    2004    2033 ..    1998    2065 .. 0.75

  Alignments for each domain:
  == domain 1  score: 2.2 bits;  conditional E-value: 0.17
      AAA_11  92 Rvgneeeriseavksvsleekvekrlekeekaqlakeiskeleklakelrafeeeeek........................eklkkskekskskleqe 166
                 R+g++    +++ + v le+ + ++        +  ++++el++ +k lr  +e++                          e+ kk k+++++ +e+ 
  KOO25144.1 616 RLGQHP---NTDEEMVELENFLAESTG------MLLTLNAELNEARKLLRFCTEQAVGfeseqlttigdtwlwpskikpkvtEANKKLKDERNRAEEEL 705
                 555444...444444444444444443......344444444455554444444433355556668999999999999888666666666666666666 PP

      AAA_11 167 rrklkkerkelskeleeaeesleeevldeaeivltTlsgags 208
                 +   ++  +el++ +++aee ++++ +d+ +  ++Tl g ++
  KOO25144.1 706 NMRKERFLEELDDYVRQAEEFANHSEIDKWQEHMATLGGLAA 747
                 677777788999999999999999999999888888887754 PP

  == domain 2  score: -0.3 bits;  conditional E-value: 0.98
      AAA_11   23 qGPPGtgKTktivellsql 41  
                  +GP GtgKT t   l +++
  KOO25144.1 1364 EGPAGTGKTETTKDLGKAI 1382
                  69*******9977766655 PP

  == domain 3  score: 4.2 bits;  conditional E-value: 0.042
      AAA_11   13 alseseitliqGPPGtgKTktivellsqll 42  
                   l++++ +l  GP GtgKT  + +l+ +l 
  KOO25144.1 2004 LLKSDKPVLYVGPTGTGKTAYVQKLILALD 2033
                  56666677889**************99994 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (2473 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       750  (0.0418317); expected 358.6 (0.02)
Passed bias filter:                      642  (0.0358079); expected 358.6 (0.02)
Passed Vit filter:                        86  (0.0047967); expected 17.9 (0.001)
Passed Fwd filter:                        24  (0.00133861); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              24  [number of targets reported over threshold]
# CPU time: 1.37u 0.33s 00:00:01.70 Elapsed: 00:00:00.51
# Mc/sec: 14459.35
//
Query:       KOO25145.1  [L=470]
Description: striated [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.8e-24   82.8   4.8    7.2e-06   25.2   0.0    6.8  6  EF-hand_1     EF hand
    1.9e-22   78.9   5.7    5.6e-05   22.9   0.0    5.9  6  EF-hand_8     EF-hand domain pair
    2.6e-22   76.8   8.6     0.0038   17.0   0.0    7.4  8  EF-hand_6     EF-hand domain
    2.4e-21   76.0   0.3    1.1e-08   35.3   0.0    4.3  4  EF-hand_7     EF-hand domain pair
    1.5e-16   59.1   2.5    2.5e-05   23.5   0.0    5.2  4  EF-hand_5     EF hand
    6.5e-05   23.2   0.7        1.8    8.9   0.1    3.5  3  SPARC_Ca_bdg  Secreted protein acidic and rich in cysteine Ca
  ------ inclusion threshold ------
      0.017   15.1   0.7       0.17   11.9   0.1    2.9  4  EF-hand_4     Cytoskeletal-regulatory complex EF hand
      0.068   13.5   0.6        9.7    6.6   0.1    3.8  3  EF-hand_9     EF-hand domain
       0.12   12.3   0.1       0.28   11.1   0.1    1.6  1  DUF3072       Protein of unknown function (DUF3072)


Domain annotation for each model (and alignments):
>> EF-hand_1  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.5   0.0     0.015        29       9      23 ..      13      27 ..      10      31 .. 0.87
   2 ?    2.6   0.0     0.061   1.2e+02       6      26 ..     121     141 ..     116     141 .. 0.84
   3 !   14.8   0.0   7.4e-06     0.015       4      26 ..     255     277 ..     252     279 .. 0.90
   4 !   15.7   0.3     4e-06     0.008       5      26 ..     295     316 ..     291     317 .. 0.87
   5 !   15.1   0.0   6.2e-06     0.012       6      28 ..     377     399 ..     372     400 .. 0.89
   6 !   25.2   0.0   3.6e-09   7.2e-06       4      27 ..     424     447 ..     422     449 .. 0.89

  Alignments for each domain:
  == domain 1  score: 4.5 bits;  conditional E-value: 0.015
                HTTTSSSEEEHHHHH CS
   EF-hand_1  9 fDkDgdGkIdfeEfk 23
                 Dk g G+++  E+ 
  KOO25145.1 13 WDKEGKGYVTVGELT 27
                5************96 PP

  == domain 2  score: 2.6 bits;  conditional E-value: 0.061
                 HHHHTTTSSSEEEHHHHHHHH CS
   EF-hand_1   6 FrefDkDgdGkIdfeEfkell 26 
                  +  D+ + Gk+d + f+++l
  KOO25145.1 121 LDAHDRKNQGKVDMDTFRRAL 141
                 5678*************9986 PP

  == domain 3  score: 14.8 bits;  conditional E-value: 7.4e-06
                 HHHHHHTTTSSSEEEHHHHHHHH CS
   EF-hand_1   4 eiFrefDkDgdGkIdfeEfkell 26 
                  +Fr +D+D++GkI   E k++l
  KOO25145.1 255 AAFRNMDRDHTGKIGSAEIKKYL 277
                 69****************99886 PP

  == domain 4  score: 15.7 bits;  conditional E-value: 4e-06
                 HHHHHTTTSSSEEEHHHHHHHH CS
   EF-hand_1   5 iFrefDkDgdGkIdfeEfkell 26 
                 i ++ D DgdG +d++E+ +++
  KOO25145.1 295 IVDLCDNDGDGEVDYNELSHMI 316
                 67899*************9985 PP

  == domain 5  score: 15.1 bits;  conditional E-value: 6.2e-06
                 HHHHTTTSSSEEEHHHHHHHHHH CS
   EF-hand_1   6 FrefDkDgdGkIdfeEfkellkk 28 
                  r++D+ gdG ++++E k++l++
  KOO25145.1 377 LRKIDTKGDGILSRDEIKAMLQT 399
                 689*****************987 PP

  == domain 6  score: 25.2 bits;  conditional E-value: 3.6e-09
                 HHHHHHTTTSSSEEEHHHHHHHHH CS
   EF-hand_1   4 eiFrefDkDgdGkIdfeEfkellk 27 
                  +++ +Dk+gdGkI+++Ef ++l+
  KOO25145.1 424 TLIDYVDKNGDGKISYQEFHRVLT 447
                 57899***************9997 PP

>> EF-hand_8  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.0       1.5     3e+03       2      12 ..      18      28 ..      14      36 .. 0.69
   2 !    9.0   0.0    0.0006       1.2      27      48 ..     116     137 ..     114     141 .. 0.88
   3 !   12.0   0.0     7e-05      0.14       9      52 ..     234     277 ..     225     280 .. 0.78
   4 !   13.1   0.6   3.1e-05     0.062      18      48 ..     283     312 ..     277     315 .. 0.87
   5 !   18.7   0.0   5.7e-07    0.0011       5      53 ..     350     398 ..     348     400 .. 0.84
   6 !   22.9   0.0   2.8e-08   5.6e-05      21      52 ..     414     446 ..     402     449 .. 0.84

  Alignments for each domain:
  == domain 1  score: -1.8 bits;  conditional E-value: 1.5
   EF-hand_8  2 kgkItreelrr 12
                kg++t+ el  
  KOO25145.1 18 KGYVTVGELTA 28
                66777777665 PP

  == domain 2  score: 9.0 bits;  conditional E-value: 0.0006
   EF-hand_8  27 evdilfrefDtdgdGkisfeEF 48 
                 +v+il++++D+++ Gk++ + F
  KOO25145.1 116 DVRILLDAHDRKNQGKVDMDTF 137
                 799**************98766 PP

  == domain 3  score: 12.0 bits;  conditional E-value: 7e-05
   EF-hand_8   9 elrril.rilglkkglseeevdilfrefDtdgdGkisfeEFcvll 52 
                 ++r+ l ++l+lk g s + v++ fr +D+d+ Gki+  E   +l
  KOO25145.1 234 TFRD-LkNVLMLKAGSSSHLVTAAFRNMDRDHTGKIGSAEIKKYL 277
                 4555.435556666777777*****************99998887 PP

  == domain 4  score: 13.1 bits;  conditional E-value: 3.1e-05
   EF-hand_8  18 glkkglseeevdilfrefDtdgdGkisfeEF 48 
                 g + ++s++ +d+++++ D dgdG ++++E 
  KOO25145.1 283 GNE-KISAKVMDCIVDLCDNDGDGEVDYNEL 312
                 555.49***********************96 PP

  == domain 5  score: 18.7 bits;  conditional E-value: 5.7e-07
   EF-hand_8   5 Itreelrrilrilglkkglseee.vdilfrefDtdgdGkisfeEFcvlle 53 
                 +t  el+++ ++++ ++ + +++ +++ +r++Dt+gdG++s +E  ++l+
  KOO25145.1 350 VTAKELQEAQKAIKERM-MIKYKdIHTGLRKIDTKGDGILSRDEIKAMLQ 398
                 78899999888887777.555544***********************998 PP

  == domain 6  score: 22.9 bits;  conditional E-value: 2.8e-08
   EF-hand_8  21 k.glseeevdilfrefDtdgdGkisfeEFcvll 52 
                 + ++++  +d+l++++D +gdGkis+ EF+ +l
  KOO25145.1 414 HgSITPACADTLIDYVDKNGDGKISYQEFHRVL 446
                 367888899*********************887 PP

>> EF-hand_6  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.4   0.0      0.01        21       8      23 ..      12      27 ..       9      31 .. 0.88
   2 !    7.0   0.1    0.0031       6.2       5      26 ..     120     141 ..     116     143 .. 0.88
   3 ?   -1.0   0.0       1.2   2.4e+03      17      28 ..     226     237 ..     219     244 .. 0.77
   4 !   17.0   0.0   1.9e-06    0.0038       4      27 ..     255     278 ..     252     286 .. 0.91
   5 !   14.3   0.1   1.4e-05     0.028       5      26 ..     295     316 ..     291     319 .. 0.86
   6 ?   -3.4   0.0       6.8   1.4e+04      17      25 ..     350     358 ..     350     361 .. 0.81
   7 !   13.2   0.0   3.3e-05     0.066       7      28 ..     378     399 ..     373     407 .. 0.90
   8 !   17.0   0.0   1.9e-06    0.0039       8      27 ..     428     447 ..     424     450 .. 0.90

  Alignments for each domain:
  == domain 1  score: 5.4 bits;  conditional E-value: 0.01
   EF-hand_6  8 lfDkdgdGkidaeElr 23
                 +Dk+g G+++  El 
  KOO25145.1 12 SWDKEGKGYVTVGELT 27
                68**********9995 PP

  == domain 2  score: 7.0 bits;  conditional E-value: 0.0031
   EF-hand_6   5 aFklfDkdgdGkidaeElrkal 26 
                 + +++D+ + Gk+d++ +r+al
  KOO25145.1 120 LLDAHDRKNQGKVDMDTFRRAL 141
                 5689***************998 PP

  == domain 3  score: -1.0 bits;  conditional E-value: 1.2
   EF-hand_6  17 idaeElrkalrk 28 
                 ++  El+k +r+
  KOO25145.1 226 VTVYELKKTFRD 237
                 788999998884 PP

  == domain 4  score: 17.0 bits;  conditional E-value: 1.9e-06
   EF-hand_6   4 eaFklfDkdgdGkidaeElrkalr 27 
                 +aF+ +D+d++Gki  +E++k l 
  KOO25145.1 255 AAFRNMDRDHTGKIGSAEIKKYLD 278
                 69*******************997 PP

  == domain 5  score: 14.3 bits;  conditional E-value: 1.4e-05
   EF-hand_6   5 aFklfDkdgdGkidaeElrkal 26 
                 + +l D+dgdG++d++El +++
  KOO25145.1 295 IVDLCDNDGDGEVDYNELSHMI 316
                 67899*************8765 PP

  == domain 6  score: -3.4 bits;  conditional E-value: 6.8
   EF-hand_6  17 idaeElrka 25 
                 ++a+El+ a
  KOO25145.1 350 VTAKELQEA 358
                 6999**987 PP

  == domain 7  score: 13.2 bits;  conditional E-value: 3.3e-05
   EF-hand_6   7 klfDkdgdGkidaeElrkalrk 28 
                 +++D+ gdG ++++E++++l++
  KOO25145.1 378 RKIDTKGDGILSRDEIKAMLQT 399
                 689*****************95 PP

  == domain 8  score: 17.0 bits;  conditional E-value: 1.9e-06
   EF-hand_6   8 lfDkdgdGkidaeElrkalr 27 
                 + Dk+gdGki+++E+ ++l+
  KOO25145.1 428 YVDKNGDGKISYQEFHRVLT 447
                 67****************98 PP

>> EF-hand_7  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.1   0.0    0.0036       7.2      12      69 ..      14     140 ..       6     143 .. 0.68
   2 ?    4.3   0.1     0.027        55       8      69 ..     121     140 ..     114     159 .. 0.67
   3 !   27.8   0.1   1.3e-09   2.5e-06       7      69 ..     256     315 ..     250     317 .. 0.76
   4 !   35.3   0.0   5.8e-12   1.1e-08       3      69 ..     372     445 ..     370     447 .. 0.90

  Alignments for each domain:
  == domain 1  score: 7.1 bits;  conditional E-value: 0.0036
   EF-hand_7  12 Dtdgdgyldkeellr............llrkifqga.......................................................gegsklsd 43 
                 D+ g gy+++ el                r+i+ ++                                                       + +  +++
  KOO25145.1  14 DKEGKGYVTVGELTAgahgelsarnarQARQISNMNsiqptgapsafagaasmptgstgrgtqgsgqytempgdfalldsvglaegqgiweRMAALIRR 112
                 777777777777777666665444444333333333777777777777777777777777777777777777777777777777777777444444444 PP

   EF-hand_7  44 ee..lellfkefDtdkdGvisfdEFlkl 69 
                 +   ++ l++  D  + G++++d F+++
  KOO25145.1 113 QRldVRILLDAHDRKNQGKVDMDTFRRA 140
                 4455889999999999999999999876 PP

  == domain 2  score: 4.3 bits;  conditional E-value: 0.027
   EF-hand_7   8 FkelDtdgdgyldkeellrllrkifqgagegsklsdeelellfkefDtdkdGvisfdEFlkl 69 
                  +++D+ + g++d++ ++r                                          +
  KOO25145.1 121 LDAHDRKNQGKVDMDTFRR------------------------------------------A 140
                 3455666666666555555..........................................3 PP

  == domain 3  score: 27.8 bits;  conditional E-value: 1.3e-09
   EF-hand_7   7 aFkelDtdgdgyldkeellrllrkifqgagegsklsdeelellfkef.DtdkdGvisfdEFlkl 69 
                 aF+ +D+d++g++  +e++++l        +g+++ + ++ +++ ++ D d+dG+++++E+ ++
  KOO25145.1 256 AFRNMDRDHTGKIGSAEIKKYLDTA----QRGNEKISAKVMDCIVDLcDNDGDGEVDYNELSHM 315
                 6******************988865....5555555544444444436************9876 PP

  == domain 4  score: 35.3 bits;  conditional E-value: 5.8e-12
   EF-hand_7   3 klkeaFkelDtdgdgyldkeellrllrkifqga.......gegsklsdeelellfkefDtdkdGvisfdEFlkl 69 
                 ++++  +++Dt gdg l+++e++ +l+ +   +           ++++   ++l++ +D+++dG+is++EF++ 
  KOO25145.1 372 DIHTGLRKIDTKGDGILSRDEIKAMLQTLELLKhvnyhtgAVHGSITPACADTLIDYVDKNGDGKISYQEFHRV 445
                 57777899****************99988777799999999999999999*********************875 PP

>> EF-hand_5  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.1   0.0    0.0088        18       3      23 ..     255     275 ..     252     277 .. 0.85
   2 !    8.2   0.1   0.00093       1.9       9      23 ..     300     314 ..     299     316 .. 0.89
   3 !   17.4   0.1   1.1e-06    0.0021       5      24 ..     377     396 ..     375     397 .. 0.91
   4 !   23.5   0.0   1.3e-08   2.5e-05       6      24 ..     427     445 ..     423     446 .. 0.86

  Alignments for each domain:
  == domain 1  score: 5.1 bits;  conditional E-value: 0.0088
                 HHHHHH-SS-SSCE-HHHHHH CS
   EF-hand_5   3 dtFqaiDlNgDGkIskeELkt 23 
                 ++F+ +D ++ GkI   E k+
  KOO25145.1 255 AAFRNMDRDHTGKIGSAEIKK 275
                 47************9998775 PP

  == domain 2  score: 8.2 bits;  conditional E-value: 0.00093
                 -SS-SSCE-HHHHHH CS
   EF-hand_5   9 DlNgDGkIskeELkt 23 
                 D +gDG ++  EL  
  KOO25145.1 300 DNDGDGEVDYNELSH 314
                 88**********975 PP

  == domain 3  score: 17.4 bits;  conditional E-value: 1.1e-06
                 HHHH-SS-SSCE-HHHHHHH CS
   EF-hand_5   5 FqaiDlNgDGkIskeELktl 24 
                 +++iD+ gDG +s++E k++
  KOO25145.1 377 LRKIDTKGDGILSRDEIKAM 396
                 589*************9987 PP

  == domain 4  score: 23.5 bits;  conditional E-value: 1.3e-08
                 HHH-SS-SSCE-HHHHHHH CS
   EF-hand_5   6 qaiDlNgDGkIskeELktl 24 
                 + +D+NgDGkIs +E+ ++
  KOO25145.1 427 DYVDKNGDGKISYQEFHRV 445
                 679*************986 PP

>> SPARC_Ca_bdg  Secreted protein acidic and rich in cysteine Ca binding region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.3   0.1     0.024        47      53     110 ..     250     312 ..     205     315 .. 0.73
   2 !    8.9   0.1   0.00088       1.8      37      85 ..     354     402 ..     328     409 .. 0.72
   3 !    6.3   0.0     0.006        12      88     111 ..     420     443 ..     412     445 .. 0.92

  Alignments for each domain:
  == domain 1  score: 4.3 bits;  conditional E-value: 0.024
  SPARC_Ca_bdg  53 kepvawkFsklDtnsdkvlsksELap.lraplvklehCikp....flescDadkdkkislkEw 110
                   ++ v+  F ++D ++ + + ++E+++ l +    +e+ +++     ++ cD d d++++ +E 
    KOO25145.1 250 SHLVTAAFRNMDRDHTGKIGSAEIKKyLDTAQRGNEKISAKvmdcIVDLCDNDGDGEVDYNEL 312
                   5667778889999988888888887634555555665544411115678*********99996 PP

  == domain 2  score: 8.9 bits;  conditional E-value: 0.00088
  SPARC_Ca_bdg  37 leelekkeeeknlkeckepvawkFsklDtnsdkvlsksELaplraplvk 85 
                     ++++k+ ++ + +  + ++    k+Dt+ d++ls+ E++++ ++l  
    KOO25145.1 354 ELQEAQKAIKERMMIKYKDIHTGLRKIDTKGDGILSRDEIKAMLQTLEL 402
                   333444444445555556799999*****************99887765 PP

  == domain 3  score: 6.3 bits;  conditional E-value: 0.006
  SPARC_Ca_bdg  88 hCikpflescDadkdkkislkEwc 111
                    C +++++  D + d+kis +E+ 
    KOO25145.1 420 ACADTLIDYVDKNGDGKISYQEFH 443
                   6*********************96 PP

>> EF-hand_4  Cytoskeletal-regulatory complex EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.0       4.9   9.8e+03      50      68 ..     122     140 ..     106     148 .. 0.71
   2 ?   11.9   0.1   8.3e-05      0.17      37      76 ..     284     322 ..     266     342 .. 0.83
   3 ?   -1.4   0.0       1.2   2.3e+03       7      38 ..     365     400 ..     360     406 .. 0.65
   4 ?   -1.7   0.0       1.4   2.7e+03      50      66 ..     427     443 ..     421     448 .. 0.80

  Alignments for each domain:
  == domain 1  score: -3.5 bits;  conditional E-value: 4.9
   EF-hand_4  50 dladidedgkldfeefcia 68 
                 d  d  + gk+d++ f  a
  KOO25145.1 122 DAHDRKNQGKVDMDTFRRA 140
                 5567778899999988655 PP

  == domain 2  score: 11.9 bits;  conditional E-value: 8.3e-05
   EF-hand_4  37 nskleedklekiwdladidedgkldfeefciamrlifdlv 76 
                 n k++ + ++ i dl+d d dg++d++e+   m l  d++
  KOO25145.1 284 NEKISAKVMDCIVDLCDNDGDGEVDYNELS-HMILCDDII 322
                 778999999*******************86.455666655 PP

  == domain 3  score: -1.4 bits;  conditional E-value: 1.2
   EF-hand_4   7 leikkyweifsglkpednk....ltgdkvapvlkns 38 
                   + ky +i  gl++ d k    l+ d++ ++l+  
  KOO25145.1 365 RMMIKYKDIHTGLRKIDTKgdgiLSRDEIKAMLQTL 400
                 556689999999987654322227777777777665 PP

  == domain 4  score: -1.7 bits;  conditional E-value: 1.4
   EF-hand_4  50 dladidedgkldfeefc 66 
                 d  d + dgk+ ++ef 
  KOO25145.1 427 DYVDKNGDGKISYQEFH 443
                 6678889********95 PP

>> EF-hand_9  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.5   0.0      0.19   3.9e+02      44      61 ..     124     140 ..     113     145 .. 0.72
   2 ?    6.6   0.1    0.0049       9.7       3      29 ..     256     281 ..     254     316 .. 0.69
   3 ?   -1.6   0.0       1.8   3.6e+03      41      62 ..     426     446 ..     420     448 .. 0.73

  Alignments for each domain:
  == domain 1  score: 1.5 bits;  conditional E-value: 0.19
   EF-hand_9  44 lDPdgedasvdldtflrv 61 
                  D +++ ++vd+dtf r 
  KOO25145.1 124 HDRKNQ-GKVDMDTFRRA 140
                 455555.89999999886 PP

  == domain 2  score: 6.6 bits;  conditional E-value: 0.0049
   EF-hand_9   3 vFevcDtqktGrVpvsrlidyLravta 29 
                  F+  D++ tG++  +++++yL   ++
  KOO25145.1 256 AFRNMDRDHTGKIGSAEIKKYLDT-AQ 281
                 69999****************964.33 PP

  == domain 3  score: -1.6 bits;  conditional E-value: 1.8
   EF-hand_9  41 akelDPdgedasvdldtflrvm 62 
                    +D +g d+++    f+rv+
  KOO25145.1 426 IDYVDKNG-DGKISYQEFHRVL 446
                 55556555.5999999999997 PP

>> DUF3072  Protein of unknown function (DUF3072)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.1   0.00014      0.28      21      51 ..     188     218 ..     184     225 .. 0.90

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00014
     DUF3072  21 SYLktLaeeAgeedavdedltkAeASerIde 51 
                   L+tLa++  + d++ ++ltk eA er+++
  KOO25145.1 188 TDLQTLADKRTHSDTFMQQLTKVEARERVEA 218
                 579*************************985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (470 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       761  (0.0424452); expected 358.6 (0.02)
Passed bias filter:                      577  (0.0321825); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.57u 0.24s 00:00:00.81 Elapsed: 00:00:00.41
# Mc/sec: 3417.30
//
Query:       KOO25146.1  [L=220]
Description: hypothetical protein Ctob_005855 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
     0.0046   16.2   1.1     0.0046   16.2   1.1    1.8  2  Med3      Mediator complex subunit 3 fungal


Domain annotation for each model (and alignments):
>> Med3  Mediator complex subunit 3 fungal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.1   0.1     0.023   4.2e+02     122     170 ..      32      58 ..       3      86 .. 0.51
   2 !   16.2   1.1   2.6e-07    0.0046     150     228 ..     112     188 ..     102     216 .. 0.77

  Alignments for each domain:
  == domain 1  score: -0.1 bits;  conditional E-value: 0.023
        Med3 122 saynkkGkasaskasvvnstpssaastPtttatPgantktaakslpapn 170
                 +a+ ++                       +  tPg++ ++ ak+l a +
  KOO25146.1  32 AAQLHNM----------------------AVVTPGSKIEAYAKTLGALT 58 
                 2222222......................33455555555555554433 PP

  == domain 2  score: 16.2 bits;  conditional E-value: 2.6e-07
        Med3 150 tttatPgantktaakslpapnatatigtptnsaaaaattatttssqakkPrkPrqtkkaaak.aaakaqaqaqaqaqaqq 228
                 t+ +tPg +++t +++  +p++ ++++     +++ +++a ++ss + kP k r + ka+ + a  + q   qa + a++
  KOO25146.1 112 TGPSTPGKGPRTPTAKPGSPKSVSSVSVA---SPSGSSAAGSPSSVPMKPGKARDKVKAQLRfAREQLQLATQAVLSARR 188
                 67789*******99999999998888777...55666666778************9996654244455555555555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (220 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       563  (0.0314016); expected 358.6 (0.02)
Passed bias filter:                      373  (0.0208043); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.25s 00:00:00.67 Elapsed: 00:00:00.41
# Mc/sec: 1602.02
//
Query:       KOO25147.1  [L=147]
Description: hypothetical protein Ctob_005856 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.5e-23   82.9   7.1    2.6e-16   60.1   0.2    2.9  3  MTP18     Mitochondrial 18 KDa protein (MTP18)
  ------ inclusion threshold ------
       0.18   11.0   0.0       0.23   10.7   0.0    1.1  1  RE_HaeII  HaeII restriction endonuclease


Domain annotation for each model (and alignments):
>> MTP18  Mitochondrial 18 KDa protein (MTP18)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.7   0.1     0.012   1.1e+02       4      24 ..      20      40 ..      18      43 .. 0.86
   2 !   60.1   0.2   2.9e-20   2.6e-16       6      67 ..      40     101 ..      35     108 .. 0.92
   3 !   24.8   0.3     2e-09   1.8e-05     103     139 ..     108     144 ..     101     147 .] 0.90

  Alignments for each domain:
  == domain 1  score: 2.7 bits;  conditional E-value: 0.012
       MTP18  4 ryaayaarlrtillsahRyva 24
                ry a+ +r+r++++   +++a
  KOO25147.1 20 RYSAFGMRMRQLFQVKAKMLA 40
                9**********9998888877 PP

  == domain 2  score: 60.1 bits;  conditional E-value: 2.9e-20
       MTP18   6 aayaarlrtillsahRyvaytsdigEsfrPvahpalVkaaYgiswaYilgDvayegykaklr 67 
                 aa  a+ +++ ls  Ry ay+sd+gE +rPv++++ Vka+Ygi++aY+ g+v+ ++y+++++
  KOO25147.1  40 AAAGAKAKAAALSNIRYTAYASDVGEGLRPVVPQWAVKASYGIAFAYVGGEVGLHTYHETQK 101
                 677789999************************************************98776 PP

  == domain 3  score: 24.8 bits;  conditional E-value: 2e-09
       MTP18 103 lvmakravFqsiASmaLPaltiHsvVkysgkalknvk 139
                  v +++++F+++AS+ LP+++iH++V+ ++ a+++v 
  KOO25147.1 108 RVFVHQSTFHGLASLYLPMVIIHQAVHGAQYAFAKVT 144
                 68999***************************99986 PP

>> RE_HaeII  HaeII restriction endonuclease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   2.6e-05      0.23     212     234 ..       9      35 ..       5      55 .. 0.76

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 2.6e-05
    RE_HaeII 212 GvtnaadrGldmyanfGlai....qvk 234
                 G t+aa+rGl+ y+ fG+ +    qvk
  KOO25147.1   9 GATEAAERGLERYSAFGMRMrqlfQVK 35 
                 89***************9752222555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (147 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       368  (0.0205254); expected 358.6 (0.02)
Passed bias filter:                      264  (0.0147247); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.38u 0.24s 00:00:00.62 Elapsed: 00:00:00.39
# Mc/sec: 1123.30
//
Query:       KOO25148.1  [L=149]
Description: hypothetical protein Ctob_005857 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (149 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       988  (0.0551063); expected 358.6 (0.02)
Passed bias filter:                      376  (0.0209716); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.40u 0.24s 00:00:00.64 Elapsed: 00:00:00.39
# Mc/sec: 1140.44
//
Query:       KOO25149.1  [L=225]
Description: hypothetical protein Ctob_005858 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.4e-10   40.6   9.5    1.1e-08   35.8   1.4    2.4  2  zf-PARP    Poly(ADP-ribose) polymerase and DNA-Ligase Zn-fing
  ------ inclusion threshold ------
      0.026   14.0   0.1       0.11   12.0   0.0    1.9  2  Adeno_52K  Adenoviral protein L1 52/55-kDa


Domain annotation for each model (and alignments):
>> zf-PARP  Poly(ADP-ribose) polymerase and DNA-Ligase Zn-finger region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.8   1.4   1.3e-12   1.1e-08       1      46 [.      20      65 ..      20      72 .. 0.92
   2 !    9.3   1.3   0.00023       2.1       5      28 ..      74      97 ..      69     113 .. 0.71

  Alignments for each domain:
  == domain 1  score: 35.8 bits;  conditional E-value: 1.3e-12
                EE-S-S--B-SSS--B--SSSEEEEE-...------EEEEHHHHHT CS
     zf-PARP  1 EyAksgrakCkkCkkkIakgelRlgkkveieeseskrWyHvgCfte 46
                E+++s+r++C+ Ck+kI+k+++R+++  + ++  + ++ H +C  +
  KOO25149.1 20 EVSSSNRSSCQVCKEKIEKDSIRVAHPSRSSNVSIMKYVHPSCYLS 65
                899***********************9788777**********876 PP

  == domain 2  score: 9.3 bits;  conditional E-value: 0.00023
                -S--B-SSS--B--SSSEEEEE-. CS
     zf-PARP  5 sgrakCkkCkkkIakgelRlgkkv 28
                + ++kC+  k +I+k+elRl   +
  KOO25149.1 74 KCKSKCRLSKHEIGKHELRLTMAL 97
                3345555566*********98754 PP

>> Adeno_52K  Adenoviral protein L1 52/55-kDa
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   1.2e-05      0.11     134     196 ..     109     168 ..     104     170 .. 0.82
   2 ?   -1.4   0.1      0.15   1.4e+03       9      42 ..     184     217 ..     174     223 .. 0.71

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 1.2e-05
   Adeno_52K 134 ylehpeskaltvqlllvaqhvedegvlreallsisekesewlrdliqllqvivqerelsveeq 196
                 + + p+ ++l  qll+ a +++ e+++ +++ s+ ++ ++w rd +  +++ + +r  +ve +
  KOO25149.1 109 FFHPPHASTLVRQLLD-AAGGT-EHTFDQLCVSLPQDAKAWARDALSGVDLTG-RRAPTVEPE 168
                 4555669999999999.55555.8*********************99999998.887777765 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 0.15
   Adeno_52K   9 apeadeehprvqlkkdvresevpatnlfRdespe 42 
                 ++e+  ++pr ++ k ++e +v   + f d+  +
  KOO25149.1 184 EAESAAKKPRAKKAKASSEYFVEDGDPFCDGDQN 217
                 3334444899999999999999999999888776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (225 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       913  (0.0509231); expected 358.6 (0.02)
Passed bias filter:                      412  (0.0229795); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.41u 0.22s 00:00:00.63 Elapsed: 00:00:00.37
# Mc/sec: 1818.72
//
Query:       KOO25150.1  [L=154]
Description: hypothetical protein Ctob_005859 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (154 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       621  (0.0346366); expected 358.6 (0.02)
Passed bias filter:                      369  (0.0205812); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.25s 00:00:00.62 Elapsed: 00:00:00.39
# Mc/sec: 1174.31
//
Query:       KOO25151.1  [L=323]
Description: RNA-binding protein nob1 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    4.5e-25   88.0   0.0    8.7e-25   87.0   0.0    1.5  1  PIN_6           PIN domain of ribonuclease
    1.3e-18   66.9   0.1    2.1e-18   66.2   0.1    1.3  1  NOB1_Zn_bind    Nin one binding (NOB1) Zn-ribbon like
  ------ inclusion threshold ------
      0.025   14.6   0.1      0.043   13.8   0.1    1.3  1  DZR             Double zinc ribbon
      0.094   12.6   1.9       0.14   12.1   0.3    2.0  2  RNA_POL_M_15KD  RNA polymerases M/15 Kd subunit
       0.11   12.2   3.0        1.9    8.2   0.3    2.5  2  zf-NADH-PPase   NADH pyrophosphatase zinc ribbon domain
        1.6    8.4   4.4        8.9    6.0   0.3    2.7  3  RecR            RecR protein


Domain annotation for each model (and alignments):
>> PIN_6  PIN domain of ribonuclease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   87.0   0.0   2.9e-28   8.7e-25       2      87 ..       5      89 ..       4      91 .. 0.94

  Alignments for each domain:
  == domain 1  score: 87.0 bits;  conditional E-value: 2.9e-28
       PIN_6  2 VlDagaliknslsslqnl.aeklyttpeVvaEirdkkarerlellplelevrePspesvkkvtefakktGDlsvLSktDievlALty 87
                V+D+g+lik    +l+++ ae+++t+peV+ E+rd++ rerl+ lp+ele+rePs+e+++++++fak tGDl+ LS+ Di+vlAL+ 
  KOO25151.1  5 VIDSGPLIKG--VRLETIgAERYVTVPEVLLELRDRHVRERLASLPFELETREPSQEALDVIRKFAKLTGDLPALSAIDIRVLALAW 89
                99*******9..788877368899*************************************************************96 PP

>> NOB1_Zn_bind  Nin one binding (NOB1) Zn-ribbon like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.2   0.1     7e-22   2.1e-18       2      72 .]     167     242 ..     166     242 .. 0.89

  Alignments for each domain:
  == domain 1  score: 66.2 bits;  conditional E-value: 7e-22
  NOB1_Zn_bind   2 krvkswvlrChaCfkvtkdmtkkFCpkCGnktLkrvavsvdengelklhlkknfq.....lnlrGtkyslpkpkgg 72 
                   ++vk+wv+rC +Cf+  +  + +FC+kCGn +L r +++vd++g+++l  +++        n+rGtk++lp+p +g
    KOO25151.1 167 RSVKQWVMRCSGCFTQQSSLESQFCSKCGNMSLVRLQAVVDDRGQQRLLPESKAParvrsTNTRGTKFPLPMPVAG 242
                   79*******************************************8887665543344469************886 PP

>> DZR  Double zinc ribbon
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.1   1.4e-05     0.043      28      49 .]     173     195 ..     145     195 .. 0.85

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 1.4e-05
         DZR  28 edrCpsCgek.vdpearfCpeCG 49 
                   rC+ C ++  ++e++fC +CG
  KOO25151.1 173 VMRCSGCFTQqSSLESQFCSKCG 195
                 679****99889**********9 PP

>> RNA_POL_M_15KD  RNA polymerases M/15 Kd subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.1      0.91   2.7e+03      14      27 ..     168     179 ..     164     182 .. 0.70
   2 ?   12.1   0.3   4.6e-05      0.14       2      10 ..     189     197 ..     189     202 .. 0.89

  Alignments for each domain:
  == domain 1  score: -1.7 bits;  conditional E-value: 0.91
                     EECSCCCEEEESSS CS
  RNA_POL_M_15KD  14 kedkegknfeCrqC 27 
                      +++++ +  C+ C
      KOO25151.1 168 SVKQWVMR--CSGC 179
                     56777765..9999 PP

  == domain 2  score: 12.1 bits;  conditional E-value: 4.6e-05
                     EBESTTTSB CS
  RNA_POL_M_15KD   2 kFCpkCgNl 10 
                     +FC+kCgN+
      KOO25151.1 189 QFCSKCGNM 197
                     7*******9 PP

>> zf-NADH-PPase  NADH pyrophosphatase zinc ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.8   0.2     0.016        47      18      27 ..     170     179 ..     166     183 .. 0.85
   2 ?    8.2   0.3   0.00064       1.9       3      10 ..     188     195 ..     187     196 .. 0.90

  Alignments for each domain:
  == domain 1  score: 3.8 bits;  conditional E-value: 0.016
  zf-NADH-PPase  18 ggwarvCpaC 27 
                     +w ++C+ C
     KOO25151.1 170 KQWVMRCSGC 179
                    68******99 PP

  == domain 2  score: 8.2 bits;  conditional E-value: 0.00064
  zf-NADH-PPase   3 hrFCgrCG 10 
                    ++FC++CG
     KOO25151.1 188 SQFCSKCG 195
                    69*****9 PP

>> RecR  RecR protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.2   0.0     0.021        64       9      24 ..     166     181 ..     164     188 .. 0.90
   2 ?    6.0   0.3     0.003       8.9      17      26 ..     189     198 ..     182     201 .. 0.90
   3 ?   -2.1   0.1      0.99     3e+03       4      14 ..     254     264 ..     253     265 .. 0.79

  Alignments for each domain:
  == domain 1  score: 3.2 bits;  conditional E-value: 0.021
                 HHHHHHH-EE-TTT-- CS
        RecR   9 LqeakekvrhCsrCgn 24 
                 L+++k+ v +Cs C++
  KOO25151.1 166 LRSVKQWVMRCSGCFT 181
                 7899**********97 PP

  == domain 2  score: 6.0 bits;  conditional E-value: 0.003
                 EE-TTT--EE CS
        RecR  17 rhCsrCgnlt 26 
                 ++Cs+Cgn++
  KOO25151.1 189 QFCSKCGNMS 198
                 79******87 PP

  == domain 3  score: -2.1 bits;  conditional E-value: 0.99
                 HHHHHHHHHHH CS
        RecR   4 eLaeaLqeake 14 
                 +Laea  +a++
  KOO25151.1 254 QLAEAVDKARR 264
                 79999999886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (323 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       567  (0.0316247); expected 358.6 (0.02)
Passed bias filter:                      471  (0.0262703); expected 358.6 (0.02)
Passed Vit filter:                        55  (0.00306766); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.46u 0.26s 00:00:00.72 Elapsed: 00:00:00.42
# Mc/sec: 2321.35
//
Query:       KOO25152.1  [L=214]
Description: hypothetical protein Ctob_005861 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (214 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       253  (0.0141112); expected 358.6 (0.02)
Passed bias filter:                      171  (0.00953762); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.22s 00:00:00.60 Elapsed: 00:00:00.38
# Mc/sec: 1705.51
//
Query:       KOO25153.1  [L=182]
Description: hypothetical protein Ctob_005860 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (182 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       251  (0.0139997); expected 358.6 (0.02)
Passed bias filter:                      195  (0.0108762); expected 358.6 (0.02)
Passed Vit filter:                        12  (0.000669307); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.22s 00:00:00.57 Elapsed: 00:00:00.36
# Mc/sec: 1522.62
//
Query:       KOO25154.1  [L=617]
Description: cyclopropane fatty acid synthase methyltransferase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    6.9e-07   29.8   0.0      2e-06   28.4   0.0    1.8  2  Methyltransf_11  Methyltransferase domain
      9e-06   26.3   0.0    2.1e-05   25.1   0.0    1.7  1  Methyltransf_25  Methyltransferase domain
    4.2e-05   23.4   0.0    7.3e-05   22.7   0.0    1.3  1  Methyltransf_23  Methyltransferase domain
    4.3e-05   22.9   0.0    8.6e-05   22.0   0.0    1.4  1  CMAS             Mycolic acid cyclopropane synthetase
    0.00025   21.7   0.0    0.00047   20.9   0.0    1.5  1  Methyltransf_12  Methyltransferase domain
    0.00053   19.8   0.0    0.00088   19.1   0.0    1.2  1  PCMT             Protein-L-isoaspartate(D-aspartate) O-methyl
     0.0012   18.5   0.0     0.0025   17.4   0.0    1.4  1  DOT1             Histone methylation protein DOT1
     0.0063   16.5   0.0      0.011   15.7   0.0    1.3  1  Methyltransf_32  Methyltransferase domain
  ------ inclusion threshold ------
      0.013   15.3   0.0      0.019   14.8   0.0    1.2  1  Methyltransf_31  Methyltransferase domain
       0.21   11.7   0.0       0.63   10.1   0.0    1.6  2  FtsJ             FtsJ-like methyltransferase


Domain annotation for each model (and alignments):
>> Methyltransf_11  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.4   0.0   1.1e-09     2e-06       1      96 []      61     168 ..      61     168 .. 0.84
   2 ?   -2.8   0.0       5.8     1e+04      12      35 ..     202     226 ..     195     243 .. 0.51

  Alignments for each domain:
  == domain 1  score: 28.4 bits;  conditional E-value: 1.1e-09
                      EEET-TTSHHHHHHH.HTTSEEEEEES-HHHHHHHHHHCCHHT-...EEEETTEECC.....CTS..S-T.T-EEEEEEES-CCC-CCHHHHHH CS
  Methyltransf_11   1 LdvGcGtGrlaeala.krgarvvgvDlskemlklakekaseegl...kvefvvadae.....klp..fed.nsfDlvvssevlhhvedpekalk 82 
                      Ld+G+G G  a++la  +g++vvgv+l   + +++ + +s+ +     v+fv ada+     +lp  f   ++fD  +s  v  h++d++++ +
       KOO25154.1  61 LDIGSGIGGPARYLAaTTGCSVVGVELQRDLYEASASLTSRCRSinkLVSFVNADATgvhslQLPqpFGLhGQFDHFMSLLVNLHIPDRRALHA 154
                      8**************6666***********99777666666655688899*******777554542255446********************** PP

                      HHHHHEEEEEEEEE CS
  Methyltransf_11  83 eiaRvLkpgGllvi 96 
                       i    +pgG++vi
       KOO25154.1 155 GILPRIRPGGTFVI 168
                      ***********996 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 5.8
                      HHHHHTT.SEEEEEES-HHHHHHHH CS
  Methyltransf_11  12 ealakrg.arvvgvDlskemlklak 35 
                      ++l++ g  +v +vD++++   +  
       KOO25154.1 202 AELEDVGfVDVETVDMTAKWAHWTA 226
                      4455555555666666555554443 PP

>> Methyltransf_25  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.1   0.0   1.2e-08   2.1e-05       2      97 .]      61     164 ..      60     164 .. 0.79

  Alignments for each domain:
  == domain 1  score: 25.1 bits;  conditional E-value: 1.2e-08
                      EEET-TTSHHHHHHHCTSTSSEEEEEESSHHHHHHHHHHHHH.TTT...TEEEEESBC.....CGBS..S.STTTEEEEEEESTGGGSSHHHHH CS
  Methyltransf_25   2 LdlGcGtGrltlalakrlgkakvtgvDiseemleaareraee.egl...nvefvqgda.....edlp..f.edgsfDlvvssgalhhlsdedle 83 
                      Ld+G G G  +++la+  g ++v+gv+++ ++ ea ++  ++ +      v+fv++da      +lp  f  +g+fD  +s      l+ +d++
       KOO25154.1  61 LDIGSGIGGPARYLAATTG-CSVVGVELQRDLYEASASLTSRcR-SinkLVSFVNADAtgvhsLQLPqpFgLHGQFDHFMSLL--VNLHIPDRR 150
                      9****************97.***********9998776665532.23559********5553333453335788*******74..455567999 PP

                      HHHHHHHHHEEEEE CS
  Methyltransf_25  84 kalkeiarvLkpgG 97 
                      ++ + i   ++pgG
       KOO25154.1 151 ALHAGILPRIRPGG 164
                      999****9999999 PP

>> Methyltransf_23  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.7   0.0   4.1e-08   7.3e-05       4     124 ..      39     175 ..      36     237 .. 0.74

  Alignments for each domain:
  == domain 1  score: 22.7 bits;  conditional E-value: 4.1e-08
  Methyltransf_23   4 qreeelsdklerllpklraggrvLdiGcGtGillevl.rengfsvtgvDlspeaveiae.............kakkaqkdqfdeqeaae...pq 80 
                      ++  e++d++++ll+ l +g+ +LdiG G G  +++l ++ g+sv+gv+l + + e  +             ++ +a  + +++ + ++     
       KOO25154.1  39 YLGTEACDEVAELLG-LGPGSTLLDIGSGIGGPARYLaATTGCSVVGVELQRDLYEASAsltsrcrsinklvSFVNADATGVHSLQLPQpfgLH 131
                      555789********9.9********************6777*********87655544499999998888774444444444444444423355 PP

  Methyltransf_23  81 gkfdlIvlrevlehvpdppellrqiatllkpgGylllseplasl 124
                      g+fd   +  v  h+pd  +l + i   ++pgG +++ +++a +
       KOO25154.1 132 GQFDHFMSLLVNLHIPDRRALHAGILPRIRPGGTFVIDDFAAVA 175
                      59999999999999999999999999999999999999987644 PP

>> CMAS  Mycolic acid cyclopropane synthetase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.0   0.0   4.8e-08   8.6e-05      52     101 ..      46      95 ..      41     112 .. 0.89

  Alignments for each domain:
  == domain 1  score: 22.0 bits;  conditional E-value: 4.8e-08
                 HHHHTTTT--TT-EEEEES-TTSHHHHHHHHHH--EEEEEES-HHHHHHH CS
        CMAS  52 dlileklelkpGmtlLdiGcGWGslvrraverydvkvvglTlSkeqakla 101
                 d + e l+l pG+tlLdiG G G+ +r+ ++  + +vvg+ l ++ ++ +
  KOO25154.1  46 DEVAELLGLGPGSTLLDIGSGIGGPARYLAATTGCSVVGVELQRDLYEAS 95 
                 677899************************************99887765 PP

>> Methyltransf_12  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.9   0.0   2.6e-07   0.00047       1      98 [.      61     165 ..      61     166 .. 0.92

  Alignments for each domain:
  == domain 1  score: 20.9 bits;  conditional E-value: 2.6e-07
  Methyltransf_12   1 LeiGcGtGsllralleklpdieytgvDispsaiedakeklakrennnnnnvelealdlldldgg.........ssfDlvvasnvlhhlkdirev 85 
                      L+iG+G G  +r+l++   +++++gv+++++    a++ l +r++  n+ v + + d+   ++          ++fD   ++ v  h++d+r++
       KOO25154.1  61 LDIGSGIGGPARYLAAT-TGCSVVGVELQRDLY-EASASLTSRCRSINKLVSFVNADATGVHSLqlpqpfglhGQFDHFMSLLVNLHIPDRRAL 152
                      8*************999.***************.999999999999999999998888766666888*************************** PP

  Methyltransf_12  86 ldnirklLkpgGr 98 
                       + i   ++pgG 
       KOO25154.1 153 HAGILPRIRPGGT 165
                      ***********97 PP

>> PCMT  Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.1   0.0   4.9e-07   0.00088      65     132 ..      48     115 ..      42     123 .. 0.78

  Alignments for each domain:
  == domain 1  score: 19.1 bits;  conditional E-value: 4.9e-07
                 HHHHTT--TT-EEEEES-TTSHHHHHHHHHHCTTCEEEEEESBHHHHHHHHHHHHHCTTC..SEEEEES- CS
        PCMT  65 alellelkkgarvLevGsGsGyltavlarlvgekgrvvsierikelveeakrnlkkldle..nvivvvgD 132
                 + ell l +g+  L++GsG G  +  la   g  + vv++e +++l+e++     +  +    v++v +D
  KOO25154.1  48 VAELLGLGPGSTLLDIGSGIGGPARYLAATTG--CSVVGVELQRDLYEASASLTSRCRSInkLVSFVNAD 115
                 679**********************9999876..667**********99876554443322245555555 PP

>> DOT1  Histone methylation protein DOT1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.4   0.0   1.4e-06    0.0025      29      82 ..      43      95 ..      35     114 .. 0.81

  Alignments for each domain:
  == domain 1  score: 17.4 bits;  conditional E-value: 1.4e-06
                HHHHHHHHHTT--TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE--HHHHHHH CS
        DOT1 29 eflsevldkvnlkkedvFvDLGSGvGnvvlqaalevgcklsvGvEimdnasela 82
                e   ev + + l++ ++ +D+GSG+G    + a+ +gc   vGvE+  +  e +
  KOO25154.1 43 EACDEVAELLGLGPGSTLLDIGSGIGGPARYLAATTGCS-VVGVELQRDLYEAS 95
                56678889999***************************9.9****987655444 PP

>> Methyltransf_32  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.0   6.3e-06     0.011      26      92 ..      57     119 ..      42     146 .. 0.87

  Alignments for each domain:
  == domain 1  score: 15.7 bits;  conditional E-value: 6.3e-06
  Methyltransf_32  26 altvvDvGaGkgYLsfvlalkekeyklkvvgidakeelvekaekraeklgkkfnkrlsfaelsieea 92 
                        t++D+G+G g  ++ la      +++vvg++++++l e++  + ++++  +nk +sf +++ ++ 
       KOO25154.1  57 GSTLLDIGSGIGGPARYLAA---TTGCSVVGVELQRDLYEASASLTSRCR-SINKLVSFVNADATGV 119
                      5799****************...89************************9.7889999999987665 PP

>> Methyltransf_31  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.8   0.0   1.1e-05     0.019       4     125 ..      57     182 ..      54     227 .. 0.81

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 1.1e-05
  Methyltransf_31   4 glrvlDlGCGtGeltfelaeelgpkaevvGiDiseeaielArenaqklgld..nveFeqgdieelekl.led.....ekfDlilsnevlnalad 89 
                      g ++lD+G+G G  +  la  + +++ vvG++ + +  e + + +++  +    v+F  +d++   +l l +      +fD  +s  v  +++d
       KOO25154.1  57 GSTLLDIGSGIGGPARYLA--ATTGCSVVGVELQRDLYEASASLTSRCRSInkLVSFVNADATGVHSLqLPQpfglhGQFDHFMSLLVNLHIPD 148
                      6789***************..557899************99996555555425699999999998877677789999999998887777***** PP

  Methyltransf_31  90 pdkileeiervlkpggilliedprllaelpakveee 125
                        +   +i   ++pgg ++i+d+   a  pa + e 
       KOO25154.1 149 RRALHAGILPRIRPGGTFVIDDFA--AVAPATAAEG 182
                      ***********************9..3333444443 PP

>> FtsJ  FtsJ-like methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.0   0.00035      0.63      16      76 ..      49     122 ..      40     139 .. 0.74
   2 ?   -2.6   0.0       2.9   5.2e+03     124     137 ..     159     172 ..     132     187 .. 0.81

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.00035
                 HT-S-..TT-EEEECT-TTSHHHHHHCCT.T.-SEEEEEESSSS............HHH.TTEEEECS-CCCSSHH CS
        FtsJ  16 fklfk..pgktvvDlgaaPGgwsqvllqrlgakgkvvavDlqpm............apl.pgvttiqgditdpeti 76 
                  +l+   pg t +D+g++ Gg + +l+  +g  + vv+v lq              + + + v+++++d t     
  KOO25154.1  49 AELLGlgPGSTLLDIGSGIGGPARYLAATTG--CSVVGVELQRDlyeasasltsrcRSInKLVSFVNADATGVHSL 122
                 4555444999*******************85..8*******99989888766654423346666667777766555 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 2.9
                 CCECCCEEEECCCH CS
        FtsJ 124 llkpggtfvlkifr 137
                  ++pggtfv+  f 
  KOO25154.1 159 RIRPGGTFVIDDFA 172
                 57999**9987665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (617 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       324  (0.0180713); expected 358.6 (0.02)
Passed bias filter:                      307  (0.0171231); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.53u 0.22s 00:00:00.75 Elapsed: 00:00:00.37
# Mc/sec: 5014.10
//
Query:       KOO25155.1  [L=449]
Description: hypothetical protein Ctob_008669 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    8.3e-09   36.0   0.0    1.7e-08   35.0   0.0    1.6  1  Methyltransf_11  Methyltransferase domain
    1.5e-05   25.6   0.0    5.2e-05   23.9   0.0    1.9  2  Methyltransf_25  Methyltransferase domain
    0.00013   21.8   0.0     0.0003   20.6   0.0    1.5  1  DSBA             DSBA-like thioredoxin domain
     0.0016   17.8   0.0     0.0027   17.1   0.0    1.3  1  Ubie_methyltran  ubiE/COQ5 methyltransferase family
     0.0028   17.5   0.0     0.0056   16.5   0.0    1.5  1  Methyltransf_23  Methyltransferase domain
     0.0047   16.7   0.0     0.0078   16.0   0.0    1.3  1  Methyltransf_31  Methyltransferase domain
     0.0059   16.3   0.0     0.0092   15.7   0.0    1.2  1  N6_N4_Mtase      DNA methylase
     0.0077   17.0   0.0      0.019   15.7   0.0    1.7  1  Methyltransf_12  Methyltransferase domain
  ------ inclusion threshold ------
      0.017   14.7   0.0      0.035   13.7   0.0    1.5  1  MetW             Methionine biosynthesis protein MetW


Domain annotation for each model (and alignments):
>> Methyltransf_11  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.0   0.0   8.7e-12   1.7e-08      51      96 .]     336     382 ..     295     382 .. 0.88

  Alignments for each domain:
  == domain 1  score: 35.0 bits;  conditional E-value: 8.7e-12
                      ECC.CTSS-TT-EEEEEEES-CCC-CCHHHHHHHHHHHEEEEEEEEE CS
  Methyltransf_11  51 dae.klpfednsfDlvvssevlhhvedpekalkeiaRvLkpgGllvi 96 
                      +++  lp++d+sf +v++  ++ ++ +p+++++e+ RvLkpgG+ ++
       KOO25155.1 336 NLHpALPYADGSFNFVTMAASVGYLTRPREVFAEMNRVLKPGGVAIV 382
                      555359*************************************9875 PP

>> Methyltransf_25  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.0       5.7   1.1e+04      52      86 ..     232     264 ..     223     270 .. 0.60
   2 !   23.9   0.0   2.6e-08   5.2e-05      46      97 .]     323     378 ..     311     378 .. 0.76

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 5.7
                      ESBCCGBSSSTTTEEEEEEESTGGGSSHHHHHHHH CS
  Methyltransf_25  52 qgdaedlpfedgsfDlvvssgalhhlsdedlekal 86 
                        d+++l+++d+   +   +++ hh++ +  ++al
       KOO25155.1 232 SSDFSRLDENDDALKYAAPNFG-HHIDAPA-RAAL 264
                      5666667777766666666555.6666554.4444 PP

  == domain 2  score: 23.9 bits;  conditional E-value: 2.6e-08
                      TTEEEEESBCCG......BSSSTTTEEEEEEESTGGGSSHHHHHHHHHHHHHHEEEEE CS
  Methyltransf_25  46 lnvefvqgdaed......lpfedgsfDlvvssgalhhlsdedlekalkeiarvLkpgG 97 
                      +nv  ++ d+ +      lp++dgsf++v+++ ++ +l+++  +++++e+ rvLkpgG
       KOO25155.1 323 ANVIAHRRDVLNlnlhpaLPYADGSFNFVTMAASVGYLTRP--REVFAEMNRVLKPGG 378
                      566666666644222223689**********877***9965..69************9 PP

>> DSBA  DSBA-like thioredoxin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.6   0.0   1.5e-07    0.0003      70     192 ..      33     167 ..      29     168 .. 0.71

  Alignments for each domain:
  == domain 1  score: 20.6 bits;  conditional E-value: 1.5e-07
                 HHHT....GGSSHHH.HHHHHHHHHHHHHHHHGHHHHHHHHHHHHHTSSS-TSSHHHHHHHHHHTTS.HHH.....HHHHHTS...HHHHHHHHHHHHH CS
        DSBA  70 eaegiplrfpkdklk.nstraarlllaagaeglaekvvrelfealwsegqaitddqellevaekaGldaee.....ldeales...eavkeavrentaa 159
                 +a  +++  ++++   n +ra+ ++ aag+e+  ++v+++l+e++++ g +i+d ++ll++  k+Gl + e     l e++     ++++  ++ + ++
  KOO25155.1  33 AARALNYAYDNTRRViNPRRAHLFVGAAGEEH-HARVYEALAERYFEHGDDISDMDTLLALNGKLGLLMLErhgscLNELMMRramDRAEGPLMNTYRR 130
                 566678888888888899*************9.79*******************************955544445533333331113334444433333 PP

                 HHHTT-SSSSEEEE.TTC....EEEESSSSHHHHHHHH CS
        DSBA 160 aqslgvtGvPtvvv.dgk....rmvfGadrldtladal 192
                      v GvP ++v +g       ++G  ++dt+ dal
  KOO25155.1 131 LDP-LVEGVPHFLVrEGVhgsgLELHGPVDVDTFIDAL 167
                 332.3888888888633234456778888888877776 PP

>> Ubie_methyltran  ubiE/COQ5 methyltransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   0.0   1.3e-06    0.0027     109     152 ..     340     383 ..     330     400 .. 0.88

  Alignments for each domain:
  == domain 1  score: 17.1 bits;  conditional E-value: 1.3e-06
                      T-TTS-T-EEEEEEES-GGG-S-HHHHHHHHHHHEEEEEEEEEE CS
  Ubie_methyltran 109 eLpfeddsfDvvtvsfGlrnvtDklkaLkeayrvlkpGGrlvvl 152
                      +Lp+ d+sf++vt++  +  +t   +++ e+ rvlkpGG  +v 
       KOO25155.1 340 ALPYADGSFNFVTMAASVGYLTRPREVFAEMNRVLKPGGVAIVS 383
                      79*************************************87664 PP

>> Methyltransf_23  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.0   2.8e-06    0.0056      77     124 ..     342     389 ..     281     414 .. 0.82

  Alignments for each domain:
  == domain 1  score: 16.5 bits;  conditional E-value: 2.8e-06
  Methyltransf_23  77 aepqgkfdlIvlrevlehvpdppellrqiatllkpgGylllseplasl 124
                      ++ +g+f+++++  + + +  p e+++ +++ lkpgG++++s  ++  
       KOO25155.1 342 PYADGSFNFVTMAASVGYLTRPREVFAEMNRVLKPGGVAIVSFTNRVF 389
                      45789***********************************99887643 PP

>> Methyltransf_31  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.0   3.9e-06    0.0078      68     113 ..     340     386 ..     317     428 .. 0.78

  Alignments for each domain:
  == domain 1  score: 16.0 bits;  conditional E-value: 3.9e-06
  Methyltransf_31  68 kl.ledekfDlilsnevlnaladpdkileeiervlkpggilliedpr 113
                       l ++d +f++++  + + +l+ p +++ e+ rvlkpgg+ +++  +
       KOO25155.1 340 ALpYADGSFNFVTMAASVGYLTRPREVFAEMNRVLKPGGVAIVSFTN 386
                      344899**********************************9998766 PP

>> N6_N4_Mtase  DNA methylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.0   4.6e-06    0.0092      30      64 ..     358     396 ..     342     434 .. 0.77

  Alignments for each domain:
  == domain 1  score: 15.7 bits;  conditional E-value: 4.6e-06
                  HHHHHHHHHHHHHHHHEEEEEEEEEEE-CCCHHT....H CS
  N6_N4_Mtase  30 eyleflekvlkevrrvLkddgsifiniddseikk....e 64 
                  +yl++ ++v++e+ rvLk++g++++++  + + +     
   KOO25155.1 358 GYLTRPREVFAEMNRVLKPGGVAIVSFTNRVFDEkatsL 396
                  79************************9999888755542 PP

>> Methyltransf_12  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.0   9.4e-06     0.019      64      98 ..     338     379 ..     307     380 .. 0.77

  Alignments for each domain:
  == domain 1  score: 15.7 bits;  conditional E-value: 9.4e-06
  Methyltransf_12  64 g.......ssfDlvvasnvlhhlkdirevldnirklLkpgGr 98 
                              +sf  v+++  + +l  +rev++++ ++LkpgG+
       KOO25155.1 338 HpalpyadGSFNFVTMAASVGYLTRPREVFAEMNRVLKPGGV 379
                      133455667********************************7 PP

>> MetW  Methionine biosynthesis protein MetW
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.0   1.8e-05     0.035      31     112 ..     305     387 ..     284     401 .. 0.76

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 1.8e-05
        MetW  31 lkeekqvdgrGleldeegvaecvakGlsviqgdldkdlenfedksfdyvvlsqtlqatrnpkevldellri...grraivsfPnf 112
                 l ++  v+ +Gl+  e g  +++a+   v++ +l   l  ++d sf++v ++ ++  + +p+ev+ e+ r+   g  aivsf n 
  KOO25155.1 305 LPNTTRVTVHGLNAFELGA-NVIAHRRDVLNLNLHPAL-PYADGSFNFVTMAASVGYLTRPREVFAEMNRVlkpGGVAIVSFTNR 387
                 6666777777777766664.456666778888888777.499**************************9995556689****995 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (449 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       264  (0.0147247); expected 358.6 (0.02)
Passed bias filter:                      250  (0.0139439); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.45u 0.23s 00:00:00.68 Elapsed: 00:00:00.36
# Mc/sec: 3704.10
//
Query:       KOO25156.1  [L=525]
Description: superoxide dismutase ni-type [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.9e-27   96.4   2.6    5.8e-27   94.8   2.6    1.8  1  Sod_Ni    Nickel-containing superoxide dismutase


Domain annotation for each model (and alignments):
>> Sod_Ni  Nickel-containing superoxide dismutase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   94.8   2.6   3.2e-31   5.8e-27       5     123 ..     388     513 ..     384     515 .. 0.96

  Alignments for each domain:
  == domain 1  score: 94.8 bits;  conditional E-value: 3.2e-31
      Sod_Ni   5 AHCdipCgiYdpaqarveal.....tvkkatkkiaeledkesdaakqnqlsRlvaiKEehaekvkeeilvlwtdYfkaqrl........ekypelhelv 90 
                  HC++pCgi+d+ + rv+al     t++ka+ ++++l ++  +  + nq++R++++KE+ha+ +++++    +dY++aqr+        ++y e++ ++
  KOO25156.1 388 NHCQVPCGIFDD-PQRVAALkedaaTIRKAMVQVNDLVKQ-GTPLSVNQATRWIMTKEDHAKSIITTV----ADYMLAQRVkkelfkddAEYREALVAH 480
                 6***********.99****99*****************98.6669***********************....****************99********* PP

      Sod_Ni  91 hkvmkaaskakqevdkekaeeLlekveelaeif 123
                 h  m+aa+k+kq vd ++++ L++++ ++  ++
  KOO25156.1 481 HLLMQAAMKTKQVVDVAACDVLDHAIADVGVMY 513
                 ****************************99998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (525 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       956  (0.0533214); expected 358.6 (0.02)
Passed bias filter:                      702  (0.0391544); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.53u 0.26s 00:00:00.79 Elapsed: 00:00:00.39
# Mc/sec: 4079.50
//
Query:       KOO25157.1  [L=981]
Description: periodic tryptophan protein 2 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.1e-46  155.8  18.7    1.7e-07   31.8   0.1   12.4 12  WD40          WD domain, G-beta repeat
    1.7e-23   82.7   0.0    0.00013   22.2   0.0    8.8  8  ANAPC4_WD40   Anaphase-promoting complex subunit 4 WD40 domai
    5.7e-20   71.6   0.1    9.3e-20   70.9   0.1    1.3  1  Utp12         Dip2/Utp12 Family
    1.7e-11   43.6   3.4      0.097   11.6   0.0    7.4  8  Ge1_WD40      WD40 region of Ge1, enhancer of mRNA-decapping 
    5.7e-09   35.7   0.2       0.07   13.1   0.0    7.7  9  PD40          WD40-like Beta Propeller Repeat
    1.6e-05   24.4   0.5       0.74    9.1   0.0    4.7  5  Nbas_N        Neuroblastoma-amplified sequence, N terminal
     0.0015   17.3   0.1        3.1    6.3   0.0    4.0  4  Nup160        Nucleoporin Nup120/160
  ------ inclusion threshold ------
      0.047   13.4   0.0        2.7    7.7   0.0    3.3  4  Hira          TUP1-like enhancer of split
       0.11   11.8   0.0         26    4.0   0.0    3.3  4  WD40_like     WD40-like domain
       0.23   11.4   0.4        6.1    6.7   0.0    3.0  3  TFIIIC_delta  Transcription factor IIIC subunit delta N-term
        9.4    6.9  11.3         34    5.1   0.0    5.5  6  PQQ_3         PQQ-like domain


Domain annotation for each model (and alignments):
>> WD40  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   0.0       1.7   2.8e+03      16      28 ..      56      68 ..      43      75 .. 0.82
   2 ?    2.7   0.0      0.17   2.7e+02      13      27 ..      94     108 ..      80     117 .. 0.76
   3 ?    6.0   0.0     0.015        25      11      26 ..     133     148 ..     120     158 .. 0.69
   4 !   23.8   0.1   3.4e-08   5.5e-05       5      36 ..     174     206 ..     170     208 .. 0.90
   5 !   14.9   0.0   2.2e-05     0.036       7      37 ..     220     251 ..     217     252 .. 0.94
   6 ?    3.0   0.0      0.13   2.2e+02      13      29 ..     394     410 ..     372     420 .. 0.70
   7 !   19.9   0.0   5.8e-07   0.00095       8      38 .]     431     463 ..     423     463 .. 0.81
   8 !   20.2   0.0   4.9e-07    0.0008       3      37 ..     469     504 ..     467     505 .. 0.90
   9 ?    4.0   0.0     0.063     1e+02      15      31 ..     525     541 ..     512     549 .. 0.87
  10 !   31.8   0.1     1e-10   1.7e-07       2      38 .]     554     594 ..     553     594 .. 0.81
  11 !   25.8   0.1   8.1e-09   1.3e-05       9      38 .]     606     636 ..     599     636 .. 0.92
  12 ?    2.9   0.1      0.14   2.2e+02      14      38 .]     672     696 ..     663     696 .. 0.87

  Alignments for each domain:
  == domain 1  score: -0.6 bits;  conditional E-value: 1.7
                EEEETTSSEEEEE CS
        WD40 16 lafspdgawlasG 28
                l fspdg+ l s+
  KOO25157.1 56 LVFSPDGSTLYSA 68
                559*****99875 PP

  == domain 2  score: 2.7 bits;  conditional E-value: 0.17
                 EEEEEEETTSSEEEE CS
        WD40  13 vtslafspdgawlas 27 
                 +t la spdga l++
  KOO25157.1  94 ITRLALSPDGAILLA 108
                 9**********9984 PP

  == domain 3  score: 6.0 bits;  conditional E-value: 0.015
                 SSEEEEEEETTSSEEE CS
        WD40  11 ssvtslafspdgawla 26 
                 +++ + +fspdg+w+a
  KOO25157.1 133 KPIADARFSPDGKWVA 148
                 4588888*******86 PP

  == domain 4  score: 23.8 bits;  conditional E-value: 3.4e-08
                 EEEESS.SSEEEEEEETTSSEEEEEETTSEEEE CS
        WD40   5 rtltGH.ssvtslafspdgawlasGsdDgtvri 36 
                 +tl G  +++ +la+spd+ +lasG++D +vr+
  KOO25157.1 174 KTLGGAgDDILCLAWSPDSLFLASGGKDMSVRV 206
                 578899777***********************8 PP

  == domain 5  score: 14.9 bits;  conditional E-value: 2.2e-05
                 EESS.SSEEEEEEETTSSEEEEEETTSEEEEE CS
        WD40   7 ltGH.ssvtslafspdgawlasGsdDgtvriW 37 
                 +tGH ssv+++ f pdg+ l + ++Dg + +W
  KOO25157.1 220 CTGHrSSVRACFFGPDGDTLYAVTRDGALSVW 251
                 68*******999*********9999******* PP

  == domain 6  score: 3.0 bits;  conditional E-value: 0.13
                 EEEEEEETTSSEEEEEE CS
        WD40  13 vtslafspdgawlasGs 29 
                 v ++a+sp g wla G+
  KOO25157.1 394 VDACAVSPTGEWLAFGC 410
                 557779*******8443 PP

  == domain 7  score: 19.9 bits;  conditional E-value: 5.8e-07
                 ESS.SS.EEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40   8 tGH.ss.vtslafspdgawlasGsdDgtvriWd 38 
                  GH +  v++la+sp g+ +a+++ D +v++W+
  KOO25157.1 431 QGHyFAeVNALAYSPGGTVIATAGGDAKVKLWS 463
                 4998446*************97655*******5 PP

  == domain 8  score: 20.2 bits;  conditional E-value: 4.9e-07
                 EEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEE CS
        WD40   3 clrtltGH.ssvtslafspdgawlasGsdDgtvriW 37 
                 c  t+t H  +vt++af p+g+ l+s+s Dgtvr +
  KOO25157.1 469 CFVTFTEHsAPVTDVAFVPHGRALVSASLDGTVRAF 504
                 7889****777**********************965 PP

  == domain 9  score: 4.0 bits;  conditional E-value: 0.063
                 EEEEETTSSEEEEEETT CS
        WD40  15 slafspdgawlasGsdD 31 
                 ++a+ p+g ++++Gs+D
  KOO25157.1 525 CVAVEPSGEMVCAGSRD 541
                 99************977 PP

  == domain 10  score: 31.8 bits;  conditional E-value: 1e-10
                 EEEEEEESS.SSEEEEE...EETTSSEEEEEETTSEEEEEE CS
        WD40   2 qclrtltGH.ssvtsla...fspdgawlasGsdDgtvriWd 38 
                 q+l tl+GH +++++la     +  a+lasGs+D+tvr+Wd
  KOO25157.1 554 QLLETLKGHdGPISCLAfggDASGAAFLASGSWDKTVRVWD 594
                 67899****888****9665444444499***********9 PP

  == domain 11  score: 25.8 bits;  conditional E-value: 8.1e-09
                 SS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40   9 GH.ssvtslafspdgawlasGsdDgtvriWd 38 
                  H s+vtslafsp+ga la ++ Dg + iWd
  KOO25157.1 606 EHgSDVTSLAFSPNGATLAVCTLDGQIAIWD 636
                 49889****************99*******9 PP

  == domain 12  score: 2.9 bits;  conditional E-value: 0.14
                 EEEEEETTSSEEEEEETTSEEEEEE CS
        WD40  14 tslafspdgawlasGsdDgtvriWd 38 
                 + +afs dg+ +++G+  + v ++d
  KOO25157.1 672 HTIAFSADGSAVLAGGNSKYVCLYD 696
                 4678***********9999999987 PP

>> ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.9   0.0   0.00054      0.88      36      81 ..      89     134 ..      56     151 .. 0.91
   2 !   10.1   0.0   0.00046      0.75      37      69 ..     179     211 ..     156     213 .. 0.88
   3 ?    1.6   0.0       0.2   3.3e+02      37      68 ..     223     254 ..     218     259 .. 0.88
   4 !   11.0   0.0   0.00025      0.41      34      79 ..     431     476 ..     397     479 .. 0.82
   5 !    8.1   0.0     0.002       3.2      36      69 ..     475     508 ..     470     525 .. 0.87
   6 ?    5.2   0.0     0.015        25      45      90 ..     527     572 ..     521     574 .. 0.90
   7 !   22.2   0.0     8e-08   0.00013      28      73 ..     591     643 ..     581     656 .. 0.82
   8 ?    2.5   0.0      0.11   1.9e+02      34      80 ..     664     710 ..     656     715 .. 0.85

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.00054
  ANAPC4_WD40  36 kedsevrsLaWkpdgklLavaysdgevrlldaesgkvvhslsvkse 81 
                  +  ++++ La +pdg +L    ++g++ + ++    v+h+l+ k+ 
   KOO25157.1  89 EARRNITRLALSPDGAILLAIDDEGHLLMANVVRRVVIHHLNLKKP 134
                  56789************************************99876 PP

  == domain 2  score: 10.1 bits;  conditional E-value: 0.00046
  ANAPC4_WD40  37 edsevrsLaWkpdgklLavaysdgevrlldaes 69 
                   +  + +LaW+pd  +La + +d +vr++++++
   KOO25157.1 179 AGDDILCLAWSPDSLFLASGGKDMSVRVHSVHK 211
                  677899**********************99975 PP

  == domain 3  score: 1.6 bits;  conditional E-value: 0.2
  ANAPC4_WD40  37 edsevrsLaWkpdgklLavaysdgevrlldae 68 
                  + s+vr+  + pdg  L  ++ dg++++ ++ 
   KOO25157.1 223 HRSSVRACFFGPDGDTLYAVTRDGALSVWEVV 254
                  678999999****************9998875 PP

  == domain 4  score: 11.0 bits;  conditional E-value: 0.00025
  ANAPC4_WD40  34 edkedsevrsLaWkpdgklLavaysdgevrlldaesgkvvhslsvk 79 
                  + +   ev++La++p g+++a a  d +v+l + +sg +  +++ +
   KOO25157.1 431 QGHYFAEVNALAYSPGGTVIATAGGDAKVKLWSPSSGFCFVTFTEH 476
                  4555679**************************9999888887766 PP

  == domain 5  score: 8.1 bits;  conditional E-value: 0.002
  ANAPC4_WD40  36 kedsevrsLaWkpdgklLavaysdgevrlldaes 69 
                  +++  v+++a+ p g+ L+ a  dg+vr +d+  
   KOO25157.1 475 EHSAPVTDVAFVPHGRALVSASLDGTVRAFDMMR 508
                  67889***********************999765 PP

  == domain 6  score: 5.2 bits;  conditional E-value: 0.015
  ANAPC4_WD40  45 aWkpdgklLavaysdg.evrlldaesgkvvhslsvksekavtclgWg 90 
                  a +p+g++ + +  d+ e+ + ++++++++++l+ ++   ++cl +g
   KOO25157.1 527 AVEPSGEMVCAGSRDSlEIYVWSVQTAQLLETLKGHDGP-ISCLAFG 572
                  66899**********999*****************9995.****986 PP

  == domain 7  score: 22.2 bits;  conditional E-value: 8e-08
  ANAPC4_WD40  28 rvwtl.......eedkedsevrsLaWkpdgklLavaysdgevrlldaesgkvv 73 
                  rvw++       +  +++s v+sLa++p+g  Lav + dg++ + da++++  
   KOO25157.1 591 RVWDFlsqktavDVLEHGSDVTSLAFSPNGATLAVCTLDGQIAIWDAKEATQT 643
                  566666666555557899*****************************988765 PP

  == domain 8  score: 2.5 bits;  conditional E-value: 0.11
  ANAPC4_WD40  34 edkedsevrsLaWkpdgklLavaysdgevrlldaesgkvvhslsvks 80 
                  + ++    + +a++ dg+    + +   v l+d+ ++++++++  ++
   KOO25157.1 664 KRNDTTCFHTIAFSADGSAVLAGGNSKYVCLYDVGEKQLLRKYALSN 710
                  55667777899****************************99998766 PP

>> Utp12  Dip2/Utp12 Family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.9   0.1   5.7e-23   9.3e-20       1     106 [.     833     937 ..     833     938 .. 0.95

  Alignments for each domain:
  == domain 1  score: 70.9 bits;  conditional E-value: 5.7e-23
                 HHHHHHH.HHHSS-TTTHHHHHHCS-CTCHHHHHHHHHHHH.HTTTTHHHHHHHHHHHHHHHHHHHHHSH.HHHH.HHHHHHHHHHHHHHHHHHHHHHH CS
       Utp12   1 ndeelleevlekippsdirltvlrLpssyvlkLLeflaerlaeksphlelllrwlkallrvHgsylvaspsdlvp.aLrslqkslrerlktlskllgln 98 
                 n+e l++ v +++pp+ i+l+++ Lp++y+ +LL fl   l e+s+hl+ +l w+++ll +H++ l+ ++  l +  Lr+++k + +r+++lsk++ +n
  KOO25157.1 833 NEEVLIRGVWQATPPEAIELVASALPPPYLQRLLGFLGAEL-ESSRHLHAILLWVHQLLASHSQRLRDQRA-LYEvPLRAIHKGVCNRYDELSKTCHSN 929
                 78999**********************************88.**************************997.66637********************** PP

                 HHHHHHHH CS
       Utp12  99 lgrLdyll 106
                 +++Ld+ll
  KOO25157.1 930 QFALDFLL 937
                 ******98 PP

>> Ge1_WD40  WD40 region of Ge1, enhancer of mRNA-decapping protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.1   0.0     0.091   1.5e+02     186     206 ..     131     151 ..     113     193 .. 0.73
   2 ?    2.8   0.0     0.029        48     187     225 ..     224     262 ..     219     269 .. 0.83
   3 !    7.1   0.0    0.0014       2.2     184     214 ..     430     462 ..     417     466 .. 0.79
   4 !   11.4   0.0     7e-05      0.11     181     217 ..     470     507 ..     464     514 .. 0.87
   5 ?    0.1   0.0       0.2   3.2e+02     215     243 ..     544     571 ..     521     594 .. 0.67
   6 !   11.6   0.0   5.9e-05     0.097     180     215 ..     600     636 ..     579     644 .. 0.84
   7 ?   -1.2   0.0      0.49   7.9e+02     186     216 ..     667     697 ..     648     705 .. 0.79
   8 ?   -1.5   0.0      0.59   9.7e+02     193     211 ..     771     789 ..     759     793 .. 0.82

  Alignments for each domain:
  == domain 1  score: 1.1 bits;  conditional E-value: 0.091
    Ge1_WD40 186 ehsliveaafspdGtalatas 206
                  +  i +a fspdG  +a a 
  KOO25157.1 131 LKKPIADARFSPDGKWVAFAV 151
                 344699**********99985 PP

  == domain 2  score: 2.8 bits;  conditional E-value: 0.029
    Ge1_WD40 187 hsliveaafspdGtalatasedGevkffqvyledeeepr 225
                  s +    f pdG +l + + dG +  + v    + ep+
  KOO25157.1 224 RSSVRACFFGPDGDTLYAVTRDGALSVWEVVSRPDAEPK 262
                 467888899********************9887766665 PP

  == domain 3  score: 7.1 bits;  conditional E-value: 0.0014
    Ge1_WD40 184 ieeh..sliveaafspdGtalatasedGevkff 214
                  + h  +++   a+sp Gt++ata  d +vk++
  KOO25157.1 430 QQGHyfAEVNALAYSPGGTVIATAGGDAKVKLW 462
                 4555334678889******************98 PP

  == domain 4  score: 11.4 bits;  conditional E-value: 7e-05
    Ge1_WD40 181 llkieehs.liveaafspdGtalatasedGevkffqvy 217
                 ++ ++ehs  +++ af p G al  as dG+v+ f + 
  KOO25157.1 470 FVTFTEHSaPVTDVAFVPHGRALVSASLDGTVRAFDMM 507
                 6788999868***********************99875 PP

  == domain 5  score: 0.1 bits;  conditional E-value: 0.2
    Ge1_WD40 215 qvyledeeeprCLheWkPhdGkslssllf 243
                  +y+   ++ + L   k hdG ++s+l f
  KOO25157.1 544 EIYVWSVQTAQLLETLKGHDG-PISCLAF 571
                 456666666666666666666.5666666 PP

  == domain 6  score: 11.6 bits;  conditional E-value: 5.9e-05
    Ge1_WD40 180 gllkieeh.sliveaafspdGtalatasedGevkffq 215
                 + + + eh s +++ afsp+G++la+++ dG++  + 
  KOO25157.1 600 TAVDVLEHgSDVTSLAFSPNGATLAVCTLDGQIAIWD 636
                 55666666379**********************9886 PP

  == domain 7  score: -1.2 bits;  conditional E-value: 0.49
    Ge1_WD40 186 ehsliveaafspdGtalatasedGevkffqv 216
                 ++++  + afs+dG a+ +  +  +v ++ v
  KOO25157.1 667 DTTCFHTIAFSADGSAVLAGGNSKYVCLYDV 697
                 456788889*****99988888777777766 PP

  == domain 8  score: -1.5 bits;  conditional E-value: 0.59
    Ge1_WD40 193 aafspdGtalatasedGev 211
                   f+pdG + a+as++G++
  KOO25157.1 771 VRFAPDGRSWAAASTEGLL 789
                 569*************986 PP

>> PD40  WD40-like Beta Propeller Repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.4   0.0    0.0056       9.1      15      24 ..      57      66 ..      51      66 .. 0.86
   2 ?   -1.4   0.0       1.5   2.5e+03      12      20 ..      95     103 ..      86     106 .. 0.79
   3 !   13.1   0.0   4.3e-05      0.07      13      26 ..     137     150 ..     129     153 .. 0.85
   4 ?   -0.5   0.0      0.77   1.3e+03      15      20 ..     187     192 ..     180     196 .. 0.79
   5 ?   -1.0   0.0       1.1   1.9e+03      16      24 ..     232     240 ..     230     242 .. 0.88
   6 ?    0.5   0.0      0.39   6.4e+02      15      25 ..     398     408 ..     395     408 .. 0.92
   7 ?    0.9   0.0      0.28   4.6e+02       8      24 ..     608     624 ..     602     627 .. 0.75
   8 ?    0.0   0.0      0.53   8.7e+02      13      21 ..     673     681 ..     671     684 .. 0.82
   9 ?   -0.3   0.0      0.69   1.1e+03      13      22 ..     770     779 ..     760     779 .. 0.84

  Alignments for each domain:
  == domain 1  score: 6.4 bits;  conditional E-value: 0.0056
                EE-TTSSEEE CS
        PD40 15 sfSPDGkrla 24
                 fSPDG++l+
  KOO25157.1 57 VFSPDGSTLY 66
                7********8 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 1.5
                 EEEEE-TTS CS
        PD40  12 gaPsfSPDG 20 
                 +  ++SPDG
  KOO25157.1  95 TRLALSPDG 103
                 55689***9 PP

  == domain 3  score: 13.1 bits;  conditional E-value: 4.3e-05
                 EEEE-TTSSEEEEE CS
        PD40  13 aPsfSPDGkrlaFs 26 
                 + +fSPDGk+ aF+
  KOO25157.1 137 DARFSPDGKWVAFA 150
                 679**********7 PP

  == domain 4  score: -0.5 bits;  conditional E-value: 0.77
                 EE-TTS CS
        PD40  15 sfSPDG 20 
                 ++SPD 
  KOO25157.1 187 AWSPDS 192
                 8****6 PP

  == domain 5  score: -1.0 bits;  conditional E-value: 1.1
                 E-TTSSEEE CS
        PD40  16 fSPDGkrla 24 
                 f PDG +l+
  KOO25157.1 232 FGPDGDTLY 240
                 77*****98 PP

  == domain 6  score: 0.5 bits;  conditional E-value: 0.39
                 EE-TTSSEEEE CS
        PD40  15 sfSPDGkrlaF 25 
                 ++SP G +laF
  KOO25157.1 398 AVSPTGEWLAF 408
                 68********9 PP

  == domain 7  score: 0.9 bits;  conditional E-value: 0.28
                 SS.EEEEEE-TTSSEEE CS
        PD40   8 pgnegaPsfSPDGkrla 24 
                  ++ ++ +fSP+G +la
  KOO25157.1 608 GSDVTSLAFSPNGATLA 624
                 55667779*****8887 PP

  == domain 8  score: 0.0 bits;  conditional E-value: 0.53
                 EEEE-TTSS CS
        PD40  13 aPsfSPDGk 21 
                  ++fS DG+
  KOO25157.1 673 TIAFSADGS 681
                 689999996 PP

  == domain 9  score: -0.3 bits;  conditional E-value: 0.69
                 EEEE-TTSSE CS
        PD40  13 aPsfSPDGkr 22 
                 a +f PDG++
  KOO25157.1 770 AVRFAPDGRS 779
                 568*****96 PP

>> Nbas_N  Neuroblastoma-amplified sequence, N terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.0   0.0    0.0039       6.3     209     257 ..      71     119 ..      59     129 .. 0.81
   2 ?    2.7   0.0      0.04        64     236     260 ..     231     255 ..     187     262 .. 0.89
   3 ?   -1.8   0.0      0.96   1.6e+03     139     254 ..     427     460 ..     418     478 .. 0.62
   4 ?   -1.0   0.0      0.55     9e+02      56      78 ..     490     512 ..     467     537 .. 0.74
   5 !    9.1   0.0   0.00046      0.74     231     268 ..     610     647 ..     584     654 .. 0.85

  Alignments for each domain:
  == domain 1  score: 6.0 bits;  conditional E-value: 0.0039
      Nbas_N 209 kkrgllkllslklysrkaeekdgvfkmslspdgtllavihfsgklsiwd 257
                 ++ + + l+  + ++ + e +  + +++lspdg++l +i   g+l + +
  KOO25157.1  71 NRVSGFDLVRSQSFTFPFEARRNITRLALSPDGAILLAIDDEGHLLMAN 119
                 556666677777777778888999****************999997765 PP

  == domain 2  score: 2.7 bits;  conditional E-value: 0.04
      Nbas_N 236 slspdgtllavihfsgklsiwdips 260
                  + pdg  l ++   g ls+w++ s
  KOO25157.1 231 FFGPDGDTLYAVTRDGALSVWEVVS 255
                 578*******************977 PP

  == domain 3  score: -1.8 bits;  conditional E-value: 0.96
      Nbas_N 139 sfsfsshyshgitaaiyhpahrlllvggcesadagvskasscglsawrvlsgspyykqvtsyeddvgalakkrgllkllslklysrkaeekdgvfkmsl 237
                  +  + hy   ++a  y p+  ++   g +                                                                     
  KOO25157.1 427 VLKQQGHYFAEVNALAYSPGGTVIATAGGD--------------------------------------------------------------------- 456
                 555556666666666666665555554444..................................................................... PP

      Nbas_N 238 spdgtllavihfsgkls 254
                               k+ 
  KOO25157.1 457 -------------AKVK 460
                 .............4444 PP

  == domain 4  score: -1.0 bits;  conditional E-value: 0.55
      Nbas_N  56 tllayaestgtvrvfdlvgsell 78 
                   l  a   gtvr fd++    +
  KOO25157.1 490 RALVSASLDGTVRAFDMMRYRNF 512
                 556667788********976554 PP

  == domain 5  score: 9.1 bits;  conditional E-value: 0.00046
      Nbas_N 231 gvfkmslspdgtllavihfsgklsiwdipslkqrgewe 268
                  v  +++sp+g+ lav  + g+++iwd     q g+ e
  KOO25157.1 610 DVTSLAFSPNGATLAVCTLDGQIAIWDAKEATQTGTIE 647
                 5778999********************99988888765 PP

>> Nup160  Nucleoporin Nup120/160
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.2   0.0     0.034        56     230     249 ..     236     255 ..     225     270 .. 0.86
   2 ?    0.0   0.0      0.16   2.6e+02     221     258 ..     433     476 ..     413     552 .. 0.72
   3 ?    2.7   0.1     0.024        40     229     252 ..     577     600 ..     566     604 .. 0.87
   4 !    6.3   0.0    0.0019       3.1     229     298 ..     619     697 ..     594     735 .. 0.76

  Alignments for each domain:
  == domain 1  score: 2.2 bits;  conditional E-value: 0.034
                 TTEEEEEETT-EEEEEETTT CS
      Nup160 230 qtylfalsrdgkLrvWnllt 249
                  ++l+a++rdg L vW + +
  KOO25157.1 236 GDTLYAVTRDGALSVWEVVS 255
                 589*************9975 PP

  == domain 2  score: 0.0 bits;  conditional E-value: 0.16
                 EET..........TTTEEEEEETT-EEEEEETTTTEEEEE.EE- CS
      Nup160 221 vavavvei.....gqtylfalsrdgkLrvWnlltgkclat.idl 258
                  ++a+v++     g t+++++  d k+++W+ ++g c  t  + 
  KOO25157.1 433 HYFAEVNAlayspGGTVIATAGGDAKVKLWSPSSGFCFVTfTEH 476
                 56677777777778999999999999999999999888774444 PP

  == domain 3  score: 2.7 bits;  conditional E-value: 0.024
                 TTTEEEEEETT-EEEEEETTTTEE CS
      Nup160 229 gqtylfalsrdgkLrvWnlltgkc 252
                 g ++l++ s d+++rvW+ l++k+
  KOO25157.1 577 GAAFLASGSWDKTVRVWDFLSQKT 600
                 77899999**********999986 PP

  == domain 4  score: 6.3 bits;  conditional E-value: 0.0019
                 TTTEEEEEETT-EEEEEETTTTEEEEEEE--.-SSSTTS--SSEESEEESSSSEEEE...................E-- CS
      Nup160 229 gqtylfalsrdgkLrvWnlltgkclatidllrdeeaqdessskstldpaesslirvs.........dggqsylvvtysp 298
                 + ++l++ ++dg + +W+ + ++++ ti+  +d+    +s sk ++   ++ +  ++          gg s +v++y  
  KOO25157.1 619 NGATLAVCTLDGQIAIWDAKEATQTGTIEGRKDVSGGRSSLSKASKRNDTTCFHTIAfsadgsavlAGGNSKYVCLYDV 697
                 678899*************************999999999888666555555555557999999999999999999943 PP

>> Hira  TUP1-like enhancer of split
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.2   0.0       7.2   1.2e+04      20      46 ..     102     128 ..      98     137 .. 0.77
   2 ?    7.7   0.0    0.0016       2.7      13      40 ..     228     255 ..     216     273 .. 0.85
   3 ?   -1.2   0.0      0.88   1.4e+03      27      50 ..     410     433 ..     393     478 .. 0.67
   4 ?    0.8   0.0       0.2   3.3e+02      14      42 ..     611     641 ..     591     683 .. 0.83

  Alignments for each domain:
  == domain 1  score: -4.2 bits;  conditional E-value: 7.2
        Hira  20 sgsyLlavtsvgllyvWnvkkkkvllp 46 
                  g  Lla+  +g+l + nv ++ v+++
  KOO25157.1 102 DGAILLAIDDEGHLLMANVVRRVVIHH 128
                 567899999999999999988777774 PP

  == domain 2  score: 7.7 bits;  conditional E-value: 0.0016
        Hira  13 pasfLessgsyLlavtsvgllyvWnvkk 40 
                 +a+f+   g+ L avt++g l+vW v +
  KOO25157.1 228 RACFFGPDGDTLYAVTRDGALSVWEVVS 255
                 677777799***************9954 PP

  == domain 3  score: -1.2 bits;  conditional E-value: 0.88
        Hira  27 vtsvgllyvWnvkkkkvllppvsl 50 
                   + g+l vW  ++++ +l+++  
  KOO25157.1 410 CAALGQLLVWEWQSESYVLKQQGH 433
                 45789********99999987655 PP

  == domain 4  score: 0.8 bits;  conditional E-value: 0.2
        Hira  14 asfLessg..syLlavtsvgllyvWnvkkkk 42 
                 ++ L++s     L++ t +g++ +W+ k+ +
  KOO25157.1 611 VTSLAFSPngATLAVCTLDGQIAIWDAKEAT 641
                 555666443399**************97654 PP

>> WD40_like  WD40-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.0      0.93   1.5e+03       7      66 ..     187     249 ..     182     255 .. 0.74
   2 ?    4.0   0.0     0.016        26       2      71 ..     437     507 ..     436     567 .. 0.86
   3 ?    2.6   0.0     0.042        69      14      73 ..     580     640 ..     574     654 .. 0.66
   4 ?   -0.5   0.0      0.37     6e+02       5      32 ..     673     700 ..     670     707 .. 0.87

  Alignments for each domain:
  == domain 1  score: -1.8 bits;  conditional E-value: 0.93
   WD40_like   7 diskkgslilyGgkddkctvlkleslesvs..ivesfedSvifvkll.dddlilvvtlDGtil 66 
                   s+++ +++ Ggkd  ++v +++ l        ++ + Sv  + +  d+d +  vt DG+++
  KOO25157.1 187 AWSPDSLFLASGGKDMSVRVHSVHKLPGYAppACTGHRSSVRACFFGpDGDTLYAVTRDGALS 249
                 56788889999*****99999999865443227788888888887752556777888888885 PP

  == domain 2  score: 4.0 bits;  conditional E-value: 0.016
   WD40_like   2 eiYsidiskkgslilyGgkddkctvlkleslesvsivesfedSvifvklldddlilv.vtlDGtillslle 71 
                 e+ ++ +s+ g++i+  g d k+++ +  s+     +++ +  v  v ++     lv ++lDGt+   ++ 
  KOO25157.1 437 EVNALAYSPGGTVIATAGGDAKVKLWSPSSGFCFVTFTEHSAPVTDVAFVPHGRALVsASLDGTVRAFDMM 507
                 7888999*******************************************9886665389****9887775 PP

  == domain 3  score: 2.6 bits;  conditional E-value: 0.042
   WD40_like  14 lilyGgkddkctvlkleslesvsivesfedSvifvkllddd.lilvvtlDGtillsllene 73 
                 +++ G+ d++++v ++ s+++   v +    v    +  +   + v+tlDG+i   + ++ 
  KOO25157.1 580 FLASGSWDKTVRVWDFLSQKTAVDVLEHGSDVTSLAFSPNGaTLAVCTLDGQIAIWDAKEA 640
                 677899999999999987766555545555555556655553788********65554444 PP

  == domain 4  score: -0.5 bits;  conditional E-value: 0.37
   WD40_like   5 sidiskkgslilyGgkddkctvlklesl 32 
                 +i +s +gs +l Gg+++ + ++++  +
  KOO25157.1 673 TIAFSADGSAVLAGGNSKYVCLYDVGEK 700
                 78999****************9998765 PP

>> TFIIIC_delta  Transcription factor IIIC subunit delta N-term
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.2   0.0      0.39   6.3e+02       7      20 ..     185     198 ..     182     205 .. 0.73
   2 ?    6.7   0.0    0.0037       6.1      95     135 ..     600     642 ..     539     645 .. 0.77
   3 ?   -1.2   0.0         1   1.7e+03       3      28 ..     669     694 ..     668     740 .. 0.83

  Alignments for each domain:
  == domain 1  score: 0.2 bits;  conditional E-value: 0.39
  TFIIIC_delta   7 alaWSeDgqlavat 20 
                   +laWS+D+   ++ 
    KOO25157.1 185 CLAWSPDSLFLASG 198
                   9*****98555555 PP

  == domain 2  score: 6.7 bits;  conditional E-value: 0.0037
  TFIIIC_delta  95 q........sqvvaaaWSPlgLsknrrClLavLtttgeLsiyeasgnke 135
                   +        s v+++a+SP+g        Lav t +g++ i++a++ ++
    KOO25157.1 600 TavdvlehgSDVTSLAFSPNG------ATLAVCTLDGQIAIWDAKEATQ 642
                   04444444599*********9......99*************9988555 PP

  == domain 3  score: -1.2 bits;  conditional E-value: 1
  TFIIIC_delta   3 stldalaWSeDgqlavatgesiyiLe 28 
                   ++ + +a+S Dg   +a g+s y+  
    KOO25157.1 669 TCFHTIAFSADGSAVLAGGNSKYVCL 694
                   68999********9999988766655 PP

>> PQQ_3  PQQ-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   0.0       1.3   2.1e+03       3      34 ..      17      66 ..      16      76 .. 0.66
   2 ?    5.1   0.0     0.021        34      20      33 ..     235     248 ..     210     253 .. 0.87
   3 ?   -1.8   0.1       3.1   5.1e+03      16      29 ..     440     454 ..     417     459 .. 0.64
   4 ?    4.6   0.0      0.03        49      20      37 ..     486     505 ..     472     507 .. 0.61
   5 ?   -2.7   0.1       5.9   9.6e+03      12      34 ..     565     591 ..     547     594 .. 0.45
   6 ?   -2.5   0.0         5   8.2e+03      12      38 ..     610     637 ..     605     638 .. 0.71

  Alignments for each domain:
  == domain 1  score: -0.6 bits;  conditional E-value: 1.3
       PQQ_3  3 vlWsvqlpg.pvnssp.................avd.gglvyvgtgdGtly 34
                ++W++  ++ ++ s+p                 ++  g+lv+  +g  tly
  KOO25157.1 17 IVWRRAAHDaATASGPrpcmtrlnfqfsnllgtVYRqGNLVFSPDG-STLY 66
                5799988874555777777777777777777754432555555554.5555 PP

  == domain 2  score: 5.1 bits;  conditional E-value: 0.021
       PQQ_3  20 dgglvyvgtgdGtl 33 
                 dg+++y++t dG l
  KOO25157.1 235 DGDTLYAVTRDGAL 248
                 79**********98 PP

  == domain 3  score: -1.8 bits;  conditional E-value: 3.1
       PQQ_3  16 spavd.gglvyvgtg 29 
                 ++a++ gg+v +++g
  KOO25157.1 440 ALAYSpGGTVIATAG 454
                 456665677766665 PP

  == domain 4  score: 4.6 bits;  conditional E-value: 0.03
       PQQ_3  20 d..gglvyvgtgdGtlyAlD 37 
                 +  g+ ++ ++ dGt++A+D
  KOO25157.1 486 VphGRALVSASLDGTVRAFD 505
                 232445555555*******9 PP

  == domain 5  score: -2.7 bits;  conditional E-value: 5.9
       PQQ_3  12 pvnsspavdgg...lvyvgtg..dGtly 34 
                 p+ s +a++g+     + ++g  d t++
  KOO25157.1 565 PI-SCLAFGGDasgAAFLASGswDKTVR 591
                 33.3346655422235555554466666 PP

  == domain 6  score: -2.5 bits;  conditional E-value: 5
       PQQ_3  12 pvnsspavd..gglvyvgtgdGtlyAlDa 38 
                 +v +s+a++  g ++ v t dG +   Da
  KOO25157.1 610 DV-TSLAFSpnGATLAVCTLDGQIAIWDA 637
                 56.56777654678889999999887776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (981 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       362  (0.0201908); expected 358.6 (0.02)
Passed bias filter:                      314  (0.0175135); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                        13  (0.000725082); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.75u 0.26s 00:00:01.01 Elapsed: 00:00:00.43
# Mc/sec: 6830.97
//
Query:       KOO25158.1  [L=136]
Description: hypothetical protein Ctob_008664 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    3.7e-15   54.2   0.1    3.7e-06   26.1   0.0    2.5  2  EF-hand_1     EF hand
    9.4e-15   53.4   0.3    2.5e-06   26.7   0.1    2.3  2  EF-hand_5     EF hand
    5.5e-14   52.4   0.0    1.1e-13   51.4   0.0    1.5  1  EF-hand_7     EF-hand domain pair
    6.2e-14   50.7   0.1    1.5e-07   30.7   0.0    2.4  2  EF-hand_6     EF-hand domain
      1e-09   38.1   0.7    3.4e-05   23.6   0.1    2.4  2  EF-hand_8     EF-hand domain pair
    0.00015   22.0   0.0    0.00021   21.6   0.0    1.2  1  SPARC_Ca_bdg  Secreted protein acidic and rich in cysteine Ca
      0.003   17.5   0.3       0.31   11.0   0.1    2.2  2  EF-hand_4     Cytoskeletal-regulatory complex EF hand
  ------ inclusion threshold ------
      0.084   13.2   0.0       0.14   12.5   0.0    1.3  1  EF-hand_9     EF-hand domain
       0.12   12.3   0.1       0.71    9.8   0.0    1.9  2  Caleosin      Caleosin related protein
       0.28   11.2   0.9       0.68   10.0   0.2    2.0  2  PspB          Phage shock protein B


Domain annotation for each model (and alignments):
>> EF-hand_1  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.1   0.0   2.1e-09   3.7e-06       2      26 ..      68      92 ..      67      95 .. 0.90
   2 !   25.9   0.1   2.3e-09   4.1e-06       2      26 ..     104     128 ..     103     131 .. 0.88

  Alignments for each domain:
  == domain 1  score: 26.1 bits;  conditional E-value: 2.1e-09
                HHHHHHHHTTTSSSEEEHHHHHHHH CS
   EF-hand_1  2 lkeiFrefDkDgdGkIdfeEfkell 26
                l+ +F+ fD+Dg+G++d +E+ ++ 
  KOO25158.1 68 LESAFKQFDTDGSGTLDADELAAAY 92
                688******************9875 PP

  == domain 2  score: 25.9 bits;  conditional E-value: 2.3e-09
                 HHHHHHHHTTTSSSEEEHHHHHHHH CS
   EF-hand_1   2 lkeiFrefDkDgdGkIdfeEfkell 26 
                 l + ++++D +gdG Id+eEfk++ 
  KOO25158.1 104 LTKCMKILDANGDGVIDLEEFKSIA 128
                 56889*****************986 PP

>> EF-hand_5  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.7   0.1   1.4e-09   2.5e-06       1      22 [.      68      89 ..      68      92 .. 0.90
   2 !   24.7   0.0   6.2e-09   1.1e-05       5      23 ..     108     126 ..     104     129 .. 0.88

  Alignments for each domain:
  == domain 1  score: 26.7 bits;  conditional E-value: 1.4e-09
                HHHHHHHH-SS-SSCE-HHHHH CS
   EF-hand_5  1 lkdtFqaiDlNgDGkIskeELk 22
                l+ +F+++D++g+G+++++EL 
  KOO25158.1 68 LESAFKQFDTDGSGTLDADELA 89
                5678****************96 PP

  == domain 2  score: 24.7 bits;  conditional E-value: 6.2e-09
                 HHHH-SS-SSCE-HHHHHH CS
   EF-hand_5   5 FqaiDlNgDGkIskeELkt 23 
                  + +D+NgDG I+ eE+k 
  KOO25158.1 108 MKILDANGDGVIDLEEFKS 126
                 6889*************97 PP

>> EF-hand_7  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.4   0.0     6e-17   1.1e-13       4      69 ..      68     127 ..      65     129 .. 0.94

  Alignments for each domain:
  == domain 1  score: 51.4 bits;  conditional E-value: 6e-17
   EF-hand_7   4 lkeaFkelDtdgdgyldkeellrllrkifqgagegsklsdeelellfkefDtdkdGvisfdEFlkl 69 
                 l+ aFk++Dtdg+g ld +el  ++         g ++ +e+l +++k +D ++dGvi+++EF+ +
  KOO25158.1  68 LESAFKQFDTDGSGTLDADELAAAYA------AAGMPIAEEKLTKCMKILDANGDGVIDLEEFKSI 127
                 6789******************8998......9******************************976 PP

>> EF-hand_6  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.7   0.0   8.6e-11   1.5e-07       2      27 ..      68      93 ..      67      96 .. 0.91
   2 !   17.8   0.0   1.2e-06    0.0021       6      25 ..     108     127 ..     103     131 .. 0.87

  Alignments for each domain:
  == domain 1  score: 30.7 bits;  conditional E-value: 8.6e-11
   EF-hand_6  2 lreaFklfDkdgdGkidaeElrkalr 27
                l++aFk+fD+dg+G++da+El +a+ 
  KOO25158.1 68 LESAFKQFDTDGSGTLDADELAAAYA 93
                789*******************9986 PP

  == domain 2  score: 17.8 bits;  conditional E-value: 1.2e-06
   EF-hand_6   6 FklfDkdgdGkidaeElrka 25 
                  k++D +gdG id eE++++
  KOO25158.1 108 MKILDANGDGVIDLEEFKSI 127
                 5899*************986 PP

>> EF-hand_8  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   0.1   1.8e-06    0.0032      25      50 ..      65      90 ..      53      93 .. 0.85
   2 !   23.6   0.1   1.9e-08   3.4e-05       6      50 ..      84     126 ..      83     130 .. 0.91

  Alignments for each domain:
  == domain 1  score: 17.3 bits;  conditional E-value: 1.8e-06
   EF-hand_8 25 eeevdilfrefDtdgdGkisfeEFcv 50
                e ++++ f+ fDtdg+G+++ +E  +
  KOO25158.1 65 EGNLESAFKQFDTDGSGTLDADELAA 90
                5678999***************9876 PP

  == domain 2  score: 23.6 bits;  conditional E-value: 1.9e-08
   EF-hand_8   6 treelrril.rilglkkglseeevdilfrefDtdgdGkisfeEFcv 50 
                 + +el  ++ ++ g++  + ee+++  ++ +D +gdG+i++eEF  
  KOO25158.1  84 DADELAAAYaAA-GMP--IAEEKLTKCMKILDANGDGVIDLEEFKS 126
                 789******666.***..**************************86 PP

>> SPARC_Ca_bdg  Secreted protein acidic and rich in cysteine Ca binding region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.6   0.0   1.2e-07   0.00021      15     111 ..      29     125 ..      18     127 .. 0.75

  Alignments for each domain:
  == domain 1  score: 21.6 bits;  conditional E-value: 1.2e-07
  SPARC_Ca_bdg  15 RlrdWlknlleelkereeekehleelekkeeeknlkeckepvawkFsklDtnsdkvlsksELaplrap..lvklehCikpflescDadkdkkislkE 109
                   R++   k+l ee +e+  +    ++++k    +  ++++ +++  F+++Dt+  ++l+  ELa+ +a   +   e+  ++ ++  Da+ d+ i+l+E
    KOO25158.1  29 RVKKLEKVLGEEQAENMGR--RARQKSKDLSDEIARMMEGNLESAFKQFDTDGSGTLDADELAAAYAAagMPIAEEKLTKCMKILDANGDGVIDLEE 123
                   5544333333333333333..3667777778888999999***********************99875225567999999999************** PP

  SPARC_Ca_bdg 110 wc 111
                   + 
    KOO25158.1 124 FK 125
                   96 PP

>> EF-hand_4  Cytoskeletal-regulatory complex EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.0   0.0     0.013        23      38      67 ..      61      90 ..      27      95 .. 0.85
   2 !   11.0   0.1   0.00017      0.31      41      71 ..     100     131 ..      94     136 .] 0.81

  Alignments for each domain:
  == domain 1  score: 5.0 bits;  conditional E-value: 0.013
   EF-hand_4 38 skleedklekiwdladidedgkldfeefci 67
                +++ e +le+ ++  d d  g+ld +e++ 
  KOO25158.1 61 ARMMEGNLESAFKQFDTDGSGTLDADELAA 90
                57888999999****************876 PP

  == domain 2  score: 11.0 bits;  conditional E-value: 0.00017
   EF-hand_4  41 eedklekiwdladidedgkldfeef.ciamrl 71 
                  e+kl+k  ++ d + dg +d+eef  ia+++
  KOO25158.1 100 AEEKLTKCMKILDANGDGVIDLEEFkSIAVKI 131
                 6899*********************5355543 PP

>> EF-hand_9  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   7.8e-05      0.14       1      61 [.      69     127 ..      69     131 .. 0.90

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 7.8e-05
   EF-hand_9   1 etvFevcDtqktGrVpvsrlidyLravtaqdpeeseLeelakelDPdgedasvdldtflrv 61 
                 e+ F+ +Dt+  G+    +l +   a +     e +L +  k lD +g  + +dl+ f+ +
  KOO25158.1  69 ESAFKQFDTDGSGTLDADELAAAYAAAGM-PIAEEKLTKCMKILDANGD-GVIDLEEFKSI 127
                 578*****************999888887.557889**********999.********987 PP

>> Caleosin  Caleosin related protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   0.0    0.0004      0.71      82     119 ..      55      92 ..      32     101 .. 0.85
   2 ?    0.6   0.0      0.27   4.8e+02       6      25 ..     104     123 ..      99     134 .. 0.77

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.0004
    Caleosin  82 gaYdeeGrfvpqkfeeifskyakekkdaltlkevlell 119
                 +  de +r+++ ++e+ f++++++ +++l ++e+ +  
  KOO25158.1  55 DLSDEIARMMEGNLESAFKQFDTDGSGTLDADELAAAY 92 
                 4558899**************************98765 PP

  == domain 2  score: 0.6 bits;  conditional E-value: 0.27
    Caleosin   6 LqqHvaFfDrdkdGiiypld 25 
                 L + ++  D + dG+i + +
  KOO25158.1 104 LTKCMKILDANGDGVIDLEE 123
                 667778889******98765 PP

>> PspB  Phage shock protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   0.2   0.00038      0.68      42      70 ..      15      43 ..      10      48 .. 0.87
   2 ?   -1.4   0.0       1.4   2.4e+03      29      49 ..      50      70 ..      46      73 .. 0.68

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.00038
        PspB 42 rLeellekAekleeRietLEriLdaespn 70
                +L+  + +Ae  +eR++ LE++L +e+++
  KOO25158.1 15 KLAFAAAEAEAHAERVKKLEKVLGEEQAE 43
                6677789999*************999875 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 1.4
        PspB 29 kkrskglsaedekrLeellek 49
                +++sk ls+e  +++e  le+
  KOO25158.1 50 RQKSKDLSDEIARMMEGNLES 70
                677788888777777665555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (136 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       989  (0.055162); expected 358.6 (0.02)
Passed bias filter:                      540  (0.0301188); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.39u 0.25s 00:00:00.64 Elapsed: 00:00:00.37
# Mc/sec: 1091.02
//
Query:       KOO25159.1  [L=165]
Description: 60s ribosomal protein l24 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    7.3e-30  103.0   0.1    7.3e-30  103.0   0.1    2.3  3  Ribosomal_L24e  Ribosomal protein L24e
  ------ inclusion threshold ------
        4.2    7.1   9.3          5    6.9   9.3    1.1  1  RR_TM4-6        Ryanodine Receptor TM 4-6


Domain annotation for each model (and alignments):
>> Ribosomal_L24e  Ribosomal protein L24e
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  103.0   0.1   8.2e-34   7.3e-30       2      65 ..       4      67 ..       3      68 .. 0.97
   2 ?   -1.9   0.1      0.46   4.1e+03      42      50 ..      70      78 ..      69      82 .. 0.75
   3 ?   -2.0   0.5       0.5   4.5e+03      37      46 ..     125     134 ..     114     151 .. 0.60

  Alignments for each domain:
  == domain 1  score: 103.0 bits;  conditional E-value: 8.2e-34
                    XX-B-TTT-SB--SS--EEEE-TTS-EEEESSHHHHHHHHTT--GGGSTTSTTT-XXXXXXXX. CS
  Ribosomal_L24e  2 ktekCsFsgykiyPGhGkrfvrnDgkvfrFlssKceklfkqkrnPrklkWTkayRrahkkelte 65
                    kte CsFsg +iyPGhG+++vr D+k+f+F+s+K+++lf q++nPrkl WT++yRra kk++ e
      KOO25159.1  4 KTELCSFSGLRIYPGHGIMYVRGDQKSFKFVSRKAKSLFTQRINPRKLSWTVLYRRATKKGTLE 67
                    8***********************************************************9865 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 0.46
                    TT--GGGST CS
  Ribosomal_L24e 42 qkrnPrklk 50
                    +k+++rk++
      KOO25159.1 70 MKKKARKVT 78
                    788888875 PP

  == domain 3  score: -2.0 bits;  conditional E-value: 0.5
                     HHHHHTT--G CS
  Ribosomal_L24e  37 eklfkqkrnP 46 
                     +k  ++k+ P
      KOO25159.1 125 AKKAEAKKAP 134
                     3444445555 PP

>> RR_TM4-6  Ryanodine Receptor TM 4-6
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.9   9.3   0.00055         5      65     157 ..      61     151 ..      35     159 .. 0.59

  Alignments for each domain:
  == domain 1  score: 6.9 bits;  conditional E-value: 0.00055
                 XXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXX..........XXXXXXXXXXXXXXXXXXXX CS
    RR_TM4-6  65 kseagLgDlseteaeesptpelkkkla.eeeeaeeekeeeeepeaeaeekadaengekeekekekeeeekeseeeeeekkkkkkakskkkeeae 157
                  +++ L D ++++a++ +++++k     + ++ + +++++ e +a a+e+a +e +e+++++   ++++k+++++  +++k ++a +++k+ a+
  KOO25159.1  61 TKKGTLEDAMKKKARKVTKATVKSVAGaSLDIIKAKRNQKPEVRAAAREAALREVKERTKAK---QAAKKAEAKKAPAAAKAAPAAKQSKAMAK 151
                 45677999999999999876666655434556666666666666666555544444443333...33444444333444444444444444433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (165 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2266  (0.126387); expected 358.6 (0.02)
Passed bias filter:                      779  (0.0434492); expected 358.6 (0.02)
Passed Vit filter:                        76  (0.00423894); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.44u 0.29s 00:00:00.73 Elapsed: 00:00:00.50
# Mc/sec: 983.65
//
Query:       KOO25160.1  [L=26]
Description: hypothetical protein Ctob_008665 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (26 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       155  (0.00864521); expected 358.6 (0.02)
Passed bias filter:                      118  (0.00658152); expected 358.6 (0.02)
Passed Vit filter:                         8  (0.000446204); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.26s 00:00:00.58 Elapsed: 00:00:00.40
# Mc/sec: 194.32
//
Query:       KOO25161.1  [L=335]
Description: hypothetical protein Ctob_010281 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
      4e-08   33.8   0.0    1.2e-05   25.8   0.0    2.3  2  OTU            OTU-like cysteine protease
    4.6e-07   29.5   0.0      0.011   15.2   0.0    2.1  2  Peptidase_C65  Peptidase C65 Otubain


Domain annotation for each model (and alignments):
>> OTU  OTU-like cysteine protease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.8   0.0     0.002        18       1      43 [.     123     166 ..     123     177 .. 0.69
   2 !   25.8   0.0   1.3e-09   1.2e-05      18      90 ..     193     271 ..     184     303 .. 0.81

  Alignments for each domain:
  == domain 1  score: 5.8 bits;  conditional E-value: 0.002
                 --SS-HHHHHHHHCCCSS.S.HCCHHHHHHHHHCHHHHHHTSSH CS
         OTU   1 rgDGnCLlravsqqlwgvsd.elrkakvseLreklaeylrehse 43 
                 rgDG+CL+r    +l++     +++a +  L + + ++l  h++
  KOO25161.1 123 RGDGHCLFRVFGAALVLGGSwYGTQAADALLAHVTNQSLPPHAS 166
                 69******988888765444666666666666666666665555 PP

  == domain 2  score: 25.8 bits;  conditional E-value: 1.3e-09
                 S.S..HCCHHHHHHHHHCHHHHHHTSSHHCCHHHHCCHHH..HHHHTTSTT..HHHHHHHHHHHHHHCTS-EEEETTSS CS
         OTU  18 vsd..elrkakvseLreklaeylrehseelelfleeeeeg..ylkeiekta..awggeleifalahiLrrpIiVlkses 90 
                  +d   + +a v +Lr   + y+++  e ++ + ++  ++  y++ +++ +   +gg++e+ al++ L++ + ++ ++ 
  KOO25161.1 193 EADgaPGGQALVAALRRCAVAYMQSAIERFRHCADSPDDFggYCEGMSDMGlaRYGGHPELVALSEALQVRVDIYDTSA 271
                 4456667788999**********************9887788*******98779********************87754 PP

>> Peptidase_C65  Peptidase C65 Otubain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.0   1.2e-06     0.011       5      59 ..      81     136 ..      77     139 .. 0.84
   2 !   12.5   0.0   8.4e-06     0.076     109     244 ..     173     306 ..     151     308 .. 0.78

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 1.2e-06
                    CSXSB---EETHHHHTTTTTTHHHHHHHHHHHTT.EEEEE-B--SSTHHHHHHHHH CS
  Peptidase_C65   5 qkplvsekkplsaLakeyeknaailkkikllsek.YssiRrvrgDGnCfyRaflfs 59 
                    + plv+++++l+a  +e +  +ai++ + +l+++   ++ ++rgDG+C++R f+ +
     KOO25161.1  81 KPPLVAMPSSLAAFGEEASVGEAIQRALASLEQTaHLKLSKIRGDGHCLFRVFGAA 136
                    5689999999*******999888888887776666****************99755 PP

  == domain 2  score: 12.5 bits;  conditional E-value: 8.4e-06
                    HHHHTTSS-HH.....HHHHHHTSHHHHHHHHHHHHHHHHHHHHHTHHHHGGGS-TT--HHHHHHHHTSS.TT--B-HHHHHHHHHHTT--EEEEE CS
  Peptidase_C65 109 kkiekkteeseeka.eellkafneqeesdyivvflRlltsaelkthadeyepFldelstveeFceqevep.vnkEaDnvqitaLaealgvkvrVey 202
                      + ++++ + ++a e+l ++ +     +++v+ lR  + a++++  + +++  d+  +   +ce   +   ++   + +++aL+eal+v+v+++ 
     KOO25161.1 173 AAVLESSKATPSAAfEALNDEADGAPGGQALVAALRRCAVAYMQSAIERFRHCADSPDDFGGYCEGMSDMgLARYGGHPELVALSEALQVRVDIYD 268
                    444444444444444666777777777889***********************************985542467899*****************98 PP

                    SSSSGBSTTSEEEEES-S....SS-S--SEEEEEETBEEEEE CS
  Peptidase_C65 203 ldrsvegesvnahafpeeaqkseeeqapeitLlYrpgHYDiL 244
                     +   +  +v +++f     ++  ++ap++  l r  HY++L
     KOO25161.1 269 TSALGPVAHVPTYRFG----EHLPATAPVVRALRRGLHYNLL 306
                    7755555666777776....4557899999999999999998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (335 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       534  (0.0297841); expected 358.6 (0.02)
Passed bias filter:                      411  (0.0229238); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.42u 0.26s 00:00:00.68 Elapsed: 00:00:00.40
# Mc/sec: 2520.19
//
Query:       KOO25162.1  [L=421]
Description: sel1 domain protein repeat-containing protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.6e-71  234.0  67.2    1.5e-07   31.8   2.6   12.0 12  Sel1      Sel1 repeat
    3.8e-05   23.8  25.9       0.02   15.1   0.7    6.5  7  MOFRL     MOFRL family
    0.00052   19.6   2.0    5.8e+02    0.2   0.0    8.7 12  Blt1_C    Get5 carboxyl domain
     0.0036   17.0   0.0         87    2.9   0.0    5.3  8  ICAM_N    Intercellular adhesion molecule (ICAM), N-terminal 
  ------ inclusion threshold ------
      0.036   14.8   3.5         79    4.0   0.0    5.3  6  Fmp27_SW  RNA pol II promoter Fmp27 protein domain


Domain annotation for each model (and alignments):
>> Sel1  Sel1 repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.4   0.2   5.6e-05       0.2      12      38 .]       1      27 [.       1      27 [. 0.92
   2 !   24.4   0.2   9.5e-09   3.4e-05       1      38 []      28      63 ..      28      63 .. 0.94
   3 !   29.9   0.7   1.7e-10   6.2e-07       1      38 []      64      99 ..      64      99 .. 0.97
   4 !   20.3   0.2   1.9e-07   0.00067       1      38 []     100     135 ..     100     135 .. 0.93
   5 !   25.3   0.6   4.9e-09   1.8e-05       1      38 []     136     171 ..     136     171 .. 0.95
   6 !   28.7   1.5     4e-10   1.4e-06       1      38 []     172     207 ..     172     207 .. 0.95
   7 !   22.8   0.1     3e-08   0.00011       1      34 [.     208     239 ..     208     242 .. 0.95
   8 !   23.5   0.1   1.7e-08   6.2e-05       1      36 [.     244     277 ..     244     279 .. 0.92
   9 !   31.4   1.4   5.9e-11   2.1e-07       1      38 []     280     315 ..     280     315 .. 0.96
  10 !   21.6   0.3   7.2e-08   0.00026       1      34 [.     316     347 ..     316     350 .. 0.95
  11 !   31.8   2.6   4.2e-11   1.5e-07       1      38 []     352     387 ..     352     387 .. 0.97
  12 ?    4.8   0.0     0.014        49       1      26 [.     388     411 ..     388     412 .. 0.92

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 5.6e-05
        Sel1 12 lylnGlgvpkDpekAiewyekAAeqGd 38
                ++ +Glg pkD+ +A+++y +AA qGd
  KOO25162.1  1 MHADGLGGPKDEAEARRLYGLAAVQGD 27
                6889*******************8876 PP

  == domain 2  score: 24.4 bits;  conditional E-value: 9.5e-09
        Sel1  1 aeAmyrLGmfylylnGlgvpkDpekAiewyekAAeqGd 38
                a A+++LG   ++  G+g pkD+ +A+++y +AA qGd
  KOO25162.1 28 AQAQCNLG--FMHAQGRGGPKDEVEARRLYGLAAVQGD 63
                68******..999*********************8876 PP

  == domain 3  score: 29.9 bits;  conditional E-value: 1.7e-10
        Sel1  1 aeAmyrLGmfylylnGlgvpkDpekAiewyekAAeqGd 38
                a A+++LG   ++  G+g pkD+ +A+++y +AA++G+
  KOO25162.1 64 AQAQCNLG--FMHAQGRGGPKDEVEARRLYGLAAAHGH 99
                68******..999************************9 PP

  == domain 4  score: 20.3 bits;  conditional E-value: 1.9e-07
        Sel1   1 aeAmyrLGmfylylnGlgvpkDpekAiewyekAAeqGd 38 
                 a A++ L+   l+++Glg pkD+ +A+++y +AA qGd
  KOO25162.1 100 AKAQCVLA--VLHEDGLGGPKDEAEARRLYGLAAVQGD 135
                 6799****..99**********************8876 PP

  == domain 5  score: 25.3 bits;  conditional E-value: 4.9e-09
        Sel1   1 aeAmyrLGmfylylnGlgvpkDpekAiewyekAAeqGd 38 
                 aeA+y+L+   ++  G+g pkD+ +A+++y +AA qGd
  KOO25162.1 136 AEAQYNLA--FMHRVGRGGPKDEAEARRLYGLAAVQGD 171
                 79******..999*********************8876 PP

  == domain 6  score: 28.7 bits;  conditional E-value: 4e-10
        Sel1   1 aeAmyrLGmfylylnGlgvpkDpekAiewyekAAeqGd 38 
                 aeA+y+L+  +++ +Glg pkD+ +A+++y +AA qGd
  KOO25162.1 172 AEAQYNLA--LMHADGLGGPKDEAEARRLYGLAAVQGD 207
                 79******..999*********************8876 PP

  == domain 7  score: 22.8 bits;  conditional E-value: 3e-08
        Sel1   1 aeAmyrLGmfylylnGlgvpkDpekAiewyekAA 34 
                 a A+++LG   ++  G+g pkD+ +A+++y +AA
  KOO25162.1 208 AQAQCNLG--FMHAQGRGGPKDEVEARRLYGLAA 239
                 68******..999*******************99 PP

  == domain 8  score: 23.5 bits;  conditional E-value: 1.7e-08
        Sel1   1 aeAmyrLGmfylylnGlgvpkDpekAiewyekAAeq 36 
                 a A+++LG   ++  G+g pkD+ +A+++y +AA q
  KOO25162.1 244 AQAQCNLG--FMHAQGRGGPKDEVEARRLYGLAAVQ 277
                 68******..999********************955 PP

  == domain 9  score: 31.4 bits;  conditional E-value: 5.9e-11
        Sel1   1 aeAmyrLGmfylylnGlgvpkDpekAiewyekAAeqGd 38 
                 a A+++L+  +++++Glg pkD+ +A+++y +AA+qGd
  KOO25162.1 280 AQAQCNLA--LMHEDGLGGPKDEAEARRLYGLAAAQGD 315
                 68******..999************************7 PP

  == domain 10  score: 21.6 bits;  conditional E-value: 7.2e-08
        Sel1   1 aeAmyrLGmfylylnGlgvpkDpekAiewyekAA 34 
                 a A+++LG  +++  G+g pkD+  A+++y +AA
  KOO25162.1 316 AQAQCNLG--LMHAQGRGGPKDEVAARRLYGLAA 347
                 68******..999*******************99 PP

  == domain 11  score: 31.8 bits;  conditional E-value: 4.2e-11
        Sel1   1 aeAmyrLGmfylylnGlgvpkDpekAiewyekAAeqGd 38 
                 a A+y+L+  +++ +G+g pkD+ +A+++y +AA++G+
  KOO25162.1 352 AQAQYNLA--LMHGDGRGGPKDEAEARRLYGLAAAHGH 387
                 68******..999************************9 PP

  == domain 12  score: 4.8 bits;  conditional E-value: 0.014
        Sel1   1 aeAmyrLGmfylylnGlgvpkDpekA 26 
                 a A++ L+   l+ +G + pkD+ +A
  KOO25162.1 388 AKAQCVLA--VLHADGSDGPKDEAEA 411
                 67999***..999**********999 PP

>> MOFRL  MOFRL family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.1       0.5   1.8e+03      14      35 ..      38      59 ..      22      69 .. 0.75
   2 !    7.3   0.2    0.0014       5.1      14      59 ..      74     121 ..      65     128 .. 0.82
   3 !    6.2   0.2    0.0032        12      15      59 ..     147     193 ..     129     205 .. 0.80
   4 ?   -0.8   0.0      0.47   1.7e+03      14      35 ..     218     239 ..     204     250 .. 0.74
   5 !    6.5   0.3    0.0026       9.3      15      61 ..     255     303 ..     250     322 .. 0.84
   6 !    9.2   0.5   0.00038       1.4      14      59 ..     326     373 ..     312     377 .. 0.83
   7 !   15.1   0.7   5.6e-06      0.02      14      61 ..     362     411 ..     357     420 .. 0.80

  Alignments for each domain:
  == domain 1  score: -0.9 bits;  conditional E-value: 0.5
                -S-----HHHHHHHHHHH...H CS
       MOFRL 14 kgkGkGGrnqelalalalelke 35
                + +G+GG+  e+  + +  l++
  KOO25162.1 38 HAQGRGGPKDEVEARRLYGLAA 59
                4579****99987766655555 PP

  == domain 2  score: 7.3 bits;  conditional E-value: 0.0014
                 -S-----HHHHHHHHHHH...HTT..T-TTEEEEEEETTS--SSSS-- CS
       MOFRL  14 kgkGkGGrnqelalalalelkele..gaeevvllsagtDGiDGptdaa 59 
                 + +G+GG+  e+  + +  l++ +  +++++vl+ +  DG  Gp+d a
  KOO25162.1  74 HAQGRGGPKDEVEARRLYGLAAAHghAKAQCVLAVLHEDGLGGPKDEA 121
                 467*********999888666666436678889999*********998 PP

  == domain 3  score: 6.2 bits;  conditional E-value: 0.0032
                 S-----HHHHHHHHHHH...HTT..T-TTEEEEEEETTS--SSSS-- CS
       MOFRL  15 gkGkGGrnqelalalalelkele..gaeevvllsagtDGiDGptdaa 59 
                   G+GG+  e   + +  l++++  ++++  l+ +  DG  Gp+d a
  KOO25162.1 147 RVGRGGPKDEAEARRLYGLAAVQgdAEAQYNLALMHADGLGGPKDEA 193
                 34*********999999888887434556669999*********998 PP

  == domain 4  score: -0.8 bits;  conditional E-value: 0.47
                 -S-----HHHHHHHHHHH...H CS
       MOFRL  14 kgkGkGGrnqelalalalelke 35 
                 + +G+GG+  e+  + +  l++
  KOO25162.1 218 HAQGRGGPKDEVEARRLYGLAA 239
                 4579****99987776665554 PP

  == domain 5  score: 6.5 bits;  conditional E-value: 0.0026
                 S-----HHHHHHHHHHH...HTT..T-TTEEEEEEETTS--SSSS--EE CS
       MOFRL  15 gkGkGGrnqelalalalelkele..gaeevvllsagtDGiDGptdaaGa 61 
                  +G+GG+  e+  + +  l++++  +++++ l+ +  DG  Gp+d a a
  KOO25162.1 255 AQGRGGPKDEVEARRLYGLAAVQgvAQAQCNLALMHEDGLGGPKDEAEA 303
                 68*********99999988888855566777999**********99855 PP

  == domain 6  score: 9.2 bits;  conditional E-value: 0.00038
                 -S-----HHHHHHHHHHH...HTT..T-TTEEEEEEETTS--SSSS-- CS
       MOFRL  14 kgkGkGGrnqelalalalelkele..gaeevvllsagtDGiDGptdaa 59 
                 + +G+GG+  e+a + +  l++++  ++++  l+ +  DG  Gp+d a
  KOO25162.1 326 HAQGRGGPKDEVAARRLYGLAAVQdvAQAQYNLALMHGDGRGGPKDEA 373
                 467***********9999888887444556669999*********998 PP

  == domain 7  score: 15.1 bits;  conditional E-value: 5.6e-06
                 -S-----HHHHHHHHHHH...HTT..T-TTEEEEEEETTS--SSSS--EE CS
       MOFRL  14 kgkGkGGrnqelalalalelkele..gaeevvllsagtDGiDGptdaaGa 61 
                 +g+G+GG+  e   + +  l++ +  +++++vl+ +  DG DGp+d a a
  KOO25162.1 362 HGDGRGGPKDEAEARRLYGLAAAHghAKAQCVLAVLHADGSDGPKDEAEA 411
                 689********9998887666665436678889999**********9966 PP

>> Blt1_C  Get5 carboxyl domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.1   0.0       0.2   7.1e+02      32      42 ..      10      20 ..       9      21 .. 0.88
   2 ?    0.2   0.0      0.16   5.8e+02      32      42 ..      46      56 ..      45      57 .. 0.89
   3 ?    0.2   0.0      0.16   5.8e+02      32      42 ..      82      92 ..      81      93 .. 0.89
   4 ?   -0.1   0.0       0.2   7.1e+02      32      42 ..     118     128 ..     117     129 .. 0.88
   5 ?   -0.1   0.0       0.2   7.1e+02      32      42 ..     154     164 ..     153     165 .. 0.88
   6 ?   -0.1   0.0       0.2   7.1e+02      32      42 ..     190     200 ..     189     201 .. 0.88
   7 ?    0.2   0.0      0.16   5.8e+02      32      42 ..     226     236 ..     225     237 .. 0.89
   8 ?    0.2   0.0      0.16   5.8e+02      32      42 ..     262     272 ..     261     273 .. 0.89
   9 ?   -0.1   0.0       0.2   7.1e+02      32      42 ..     298     308 ..     297     309 .. 0.88
  10 ?   -2.0   0.0      0.79   2.8e+03      32      42 ..     334     344 ..     334     345 .. 0.87
  11 ?   -0.1   0.0       0.2   7.1e+02      32      42 ..     370     380 ..     369     381 .. 0.88
  12 ?   -3.3   0.1         2   7.2e+03      32      40 ..     406     414 ..     406     415 .. 0.85

  Alignments for each domain:
  == domain 1  score: -0.1 bits;  conditional E-value: 0.2
      Blt1_C 32 KDeeeaerlrg 42
                KDe+ea+rl g
  KOO25162.1 10 KDEAEARRLYG 20
                9*******976 PP

  == domain 2  score: 0.2 bits;  conditional E-value: 0.16
      Blt1_C 32 KDeeeaerlrg 42
                KDe+ea+rl g
  KOO25162.1 46 KDEVEARRLYG 56
                9*******976 PP

  == domain 3  score: 0.2 bits;  conditional E-value: 0.16
      Blt1_C 32 KDeeeaerlrg 42
                KDe+ea+rl g
  KOO25162.1 82 KDEVEARRLYG 92
                9*******976 PP

  == domain 4  score: -0.1 bits;  conditional E-value: 0.2
      Blt1_C  32 KDeeeaerlrg 42 
                 KDe+ea+rl g
  KOO25162.1 118 KDEAEARRLYG 128
                 9*******976 PP

  == domain 5  score: -0.1 bits;  conditional E-value: 0.2
      Blt1_C  32 KDeeeaerlrg 42 
                 KDe+ea+rl g
  KOO25162.1 154 KDEAEARRLYG 164
                 9*******976 PP

  == domain 6  score: -0.1 bits;  conditional E-value: 0.2
      Blt1_C  32 KDeeeaerlrg 42 
                 KDe+ea+rl g
  KOO25162.1 190 KDEAEARRLYG 200
                 9*******976 PP

  == domain 7  score: 0.2 bits;  conditional E-value: 0.16
      Blt1_C  32 KDeeeaerlrg 42 
                 KDe+ea+rl g
  KOO25162.1 226 KDEVEARRLYG 236
                 9*******976 PP

  == domain 8  score: 0.2 bits;  conditional E-value: 0.16
      Blt1_C  32 KDeeeaerlrg 42 
                 KDe+ea+rl g
  KOO25162.1 262 KDEVEARRLYG 272
                 9*******976 PP

  == domain 9  score: -0.1 bits;  conditional E-value: 0.2
      Blt1_C  32 KDeeeaerlrg 42 
                 KDe+ea+rl g
  KOO25162.1 298 KDEAEARRLYG 308
                 9*******976 PP

  == domain 10  score: -2.0 bits;  conditional E-value: 0.79
      Blt1_C  32 KDeeeaerlrg 42 
                 KDe+ a+rl g
  KOO25162.1 334 KDEVAARRLYG 344
                 9******9976 PP

  == domain 11  score: -0.1 bits;  conditional E-value: 0.2
      Blt1_C  32 KDeeeaerlrg 42 
                 KDe+ea+rl g
  KOO25162.1 370 KDEAEARRLYG 380
                 9*******976 PP

  == domain 12  score: -3.3 bits;  conditional E-value: 2
      Blt1_C  32 KDeeeaerl 40 
                 KDe+ea+ +
  KOO25162.1 406 KDEAEARTV 414
                 9****9875 PP

>> ICAM_N  Intercellular adhesion molecule (ICAM), N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.9   0.0     0.024        87      48      70 ..      12      34 ..       9      43 .. 0.85
   2 ?    2.6   0.0     0.031   1.1e+02      50      70 ..      50      70 ..      44      78 .. 0.82
   3 ?   -3.7   0.0       2.7   9.9e+03      49      65 ..     121     137 ..     119     139 .. 0.81
   4 ?   -3.7   0.0       2.7   9.9e+03      49      65 ..     157     173 ..     155     175 .. 0.81
   5 ?    2.8   0.0     0.025        91      48      70 ..     192     214 ..     189     222 .. 0.85
   6 ?   -1.9   0.0      0.74   2.7e+03      50      69 ..     230     249 ..     225     257 .. 0.80
   7 ?   -2.4   0.0       1.1   3.9e+03      50      69 ..     266     285 ..     261     288 .. 0.81
   8 ?   -0.7   0.0      0.32   1.1e+03      48      69 ..     300     321 ..     298     329 .. 0.84

  Alignments for each domain:
  == domain 1  score: 2.9 bits;  conditional E-value: 0.024
                ECCTEEEEEEEEE-SSEEEEEEE CS
      ICAM_N 48 egqgwkafelsnvsedsvllChv 70
                e+++++ + l+ v++d++ +C  
  KOO25162.1 12 EAEARRLYGLAAVQGDAQAQCNL 34
                567899***************75 PP

  == domain 2  score: 2.6 bits;  conditional E-value: 0.031
                CTEEEEEEEEE-SSEEEEEEE CS
      ICAM_N 50 qgwkafelsnvsedsvllChv 70
                ++++ + l+ v++d++ +C  
  KOO25162.1 50 EARRLYGLAAVQGDAQAQCNL 70
                5699***************75 PP

  == domain 3  score: -3.7 bits;  conditional E-value: 2.7
                 CCTEEEEEEEEE-SSEE CS
      ICAM_N  49 gqgwkafelsnvsedsv 65 
                 +++++ + l+ v++d++
  KOO25162.1 121 AEARRLYGLAAVQGDAE 137
                 57899999****99976 PP

  == domain 4  score: -3.7 bits;  conditional E-value: 2.7
                 CCTEEEEEEEEE-SSEE CS
      ICAM_N  49 gqgwkafelsnvsedsv 65 
                 +++++ + l+ v++d++
  KOO25162.1 157 AEARRLYGLAAVQGDAE 173
                 57899999****99976 PP

  == domain 5  score: 2.8 bits;  conditional E-value: 0.025
                 ECCTEEEEEEEEE-SSEEEEEEE CS
      ICAM_N  48 egqgwkafelsnvsedsvllChv 70 
                 e+++++ + l+ v++d++ +C  
  KOO25162.1 192 EAEARRLYGLAAVQGDAQAQCNL 214
                 567899***************75 PP

  == domain 6  score: -1.9 bits;  conditional E-value: 0.74
                 CTEEEEEEEEE-SSEEEEEE CS
      ICAM_N  50 qgwkafelsnvsedsvllCh 69 
                 ++++ + l+ v++ ++ +C 
  KOO25162.1 230 EARRLYGLAAVQDVAQAQCN 249
                 56999*******99999996 PP

  == domain 7  score: -2.4 bits;  conditional E-value: 1.1
                 CTEEEEEEEEE-SSEEEEEE CS
      ICAM_N  50 qgwkafelsnvsedsvllCh 69 
                 ++++ + l+ v++ ++ +C 
  KOO25162.1 266 EARRLYGLAAVQGVAQAQCN 285
                 5699999*****99999996 PP

  == domain 8  score: -0.7 bits;  conditional E-value: 0.32
                 ECCTEEEEEEEEE-SSEEEEEE CS
      ICAM_N  48 egqgwkafelsnvsedsvllCh 69 
                 e+++++ + l+  ++d++ +C 
  KOO25162.1 300 EAEARRLYGLAAAQGDAQAQCN 321
                 5678999**************7 PP

>> Fmp27_SW  RNA pol II promoter Fmp27 protein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.3   0.0      0.15   5.5e+02      86      97 ..      36      47 ..      30      49 .. 0.93
   2 ?    1.3   0.0      0.16   5.7e+02      86      97 ..      72      83 ..      67      85 .. 0.93
   3 ?    4.0   0.0     0.022        79      85      97 ..     143     155 ..     137     157 .. 0.91
   4 ?    1.3   0.0      0.15   5.5e+02      86      97 ..     216     227 ..     210     229 .. 0.93
   5 ?    1.4   0.0      0.15   5.4e+02      86      97 ..     252     263 ..     245     265 .. 0.93
   6 ?   -2.9   0.1       3.3   1.2e+04      87      97 ..     325     335 ..     324     336 .. 0.91

  Alignments for each domain:
  == domain 1  score: 1.3 bits;  conditional E-value: 0.15
    Fmp27_SW 86 FlhdvGkGvPkd 97
                F+h +G G Pkd
  KOO25162.1 36 FMHAQGRGGPKD 47
                ***********9 PP

  == domain 2  score: 1.3 bits;  conditional E-value: 0.16
    Fmp27_SW 86 FlhdvGkGvPkd 97
                F+h +G G Pkd
  KOO25162.1 72 FMHAQGRGGPKD 83
                9**********9 PP

  == domain 3  score: 4.0 bits;  conditional E-value: 0.022
    Fmp27_SW  85 dFlhdvGkGvPkd 97 
                  F+h+vG G Pkd
  KOO25162.1 143 AFMHRVGRGGPKD 155
                 5***********9 PP

  == domain 4  score: 1.3 bits;  conditional E-value: 0.15
    Fmp27_SW  86 FlhdvGkGvPkd 97 
                 F+h +G G Pkd
  KOO25162.1 216 FMHAQGRGGPKD 227
                 ***********9 PP

  == domain 5  score: 1.4 bits;  conditional E-value: 0.15
    Fmp27_SW  86 FlhdvGkGvPkd 97 
                 F+h +G G Pkd
  KOO25162.1 252 FMHAQGRGGPKD 263
                 ***********9 PP

  == domain 6  score: -2.9 bits;  conditional E-value: 3.3
    Fmp27_SW  87 lhdvGkGvPkd 97 
                 +h +G G Pkd
  KOO25162.1 325 MHAQGRGGPKD 335
                 799*******9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (421 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       146  (0.00814323); expected 358.6 (0.02)
Passed bias filter:                      101  (0.00563333); expected 358.6 (0.02)
Passed Vit filter:                         6  (0.000334653); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.47u 0.25s 00:00:00.72 Elapsed: 00:00:00.43
# Mc/sec: 2965.05
//
Query:       KOO25163.1  [L=371]
Description: hypothetical protein Ctob_010283 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (371 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       295  (0.0164538); expected 358.6 (0.02)
Passed bias filter:                      265  (0.0147805); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.44u 0.25s 00:00:00.69 Elapsed: 00:00:00.39
# Mc/sec: 2822.63
//
Query:       KOO25164.1  [L=806]
Description: tpr repeat protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.1e-14   53.3  18.7    3.1e-06   27.7   0.1    4.9  4  TPR_16    Tetratricopeptide repeat
      2e-11   43.2   1.4       0.03   14.1   0.0    5.7  6  TPR_1     Tetratricopeptide repeat
    4.7e-09   35.8   0.9       0.15   12.3   0.0    5.5  5  TPR_8     Tetratricopeptide repeat
    8.8e-09   35.5  19.7        1.3   10.0   0.1    6.9  6  TPR_14    Tetratricopeptide repeat
    2.4e-08   33.5  10.1     0.0087   15.7   0.7    5.0  5  TPR_11    TPR repeat
    2.8e-08   34.2  14.1     0.0043   17.5   0.0    4.2  3  TPR_19    Tetratricopeptide repeat
    4.5e-08   32.6  12.3       0.27   11.5   0.0    6.2  6  TPR_2     Tetratricopeptide repeat
    5.7e-08   32.9   9.4       0.11   12.8   3.0    3.9  3  TPR_12    Tetratricopeptide repeat
    1.9e-07   31.0  10.1      0.022   15.1   0.2    5.1  4  TPR_17    Tetratricopeptide repeat
      7e-06   25.7   6.6      0.059   13.4   0.1    5.4  5  TPR_7     Tetratricopeptide repeat
    6.2e-05   22.7  19.9      0.057   13.3   0.0    5.7  5  TPR_10    Tetratricopeptide repeat
     0.0003   21.3   4.5      0.012   16.1   3.7    2.5  2  BTAD      Bacterial transcriptional activator domain
    0.00071   20.1   0.0        3.1    8.4   0.0    3.2  3  DUF4810   Domain of unknown function (DUF4810)
     0.0018   18.8   8.0        6.1    7.7   0.0    5.6  6  TPR_6     Tetratricopeptide repeat
  ------ inclusion threshold ------
       0.14   12.9  25.7       0.16   12.7   2.2    7.3  6  TPR_4     Tetratricopeptide repeat
       0.76    9.7   0.0       0.76    9.7   0.0    3.7  2  Wzy_C_2   Virulence factor membrane-bound polymerase, C-termi


Domain annotation for each model (and alignments):
>> TPR_16  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.3   0.5    0.0016       1.8      15      62 ..     547     596 ..     545     600 .. 0.67
   2 !    7.9   2.3    0.0044         5       1      46 [.     572     626 ..     572     632 .. 0.70
   3 !   22.2   4.4   1.5e-07   0.00017      10      58 ..     631     677 ..     625     686 .. 0.87
   4 !   27.7   0.1   2.7e-09   3.1e-06      11      67 ..     737     791 ..     736     792 .. 0.95

  Alignments for each domain:
  == domain 1  score: 9.3 bits;  conditional E-value: 0.0016
      TPR_16  15 dAaaaleaalkrdpssPd..aaeAllllgdaalrqgrlaeAaalyraalr 62 
                 +A++++e ++ rd+ + +   + A l+lg +  +qg+l++A+al+ +a+ 
  KOO25164.1 547 EAERLFESLIQRDATDTAsfIRYAILNLGSLKSQQGDLDAAVALFSRAVV 596
                 56666666666666555555666667778888888888888888888874 PP

  == domain 2  score: 7.9 bits;  conditional E-value: 0.0044
      TPR_16   1 lalaraalragdyddAaaaleaalkrdpssPd............aaeAllllgdaalr 46 
                 l+l+ +  ++gd d+A+a++ +a+ +d    +             ++Al+ l+ a+ r
  KOO25164.1 572 LNLGSLKSQQGDLDAAVALFSRAVVLD---QQlnalrgrrggeaSPQALFKLATALHR 626
                 567778889999999999998888777...6656666666666666666666666655 PP

  == domain 3  score: 22.2 bits;  conditional E-value: 1.5e-07
      TPR_16  10 agdyddAaaaleaalkrdpssPdaaeAllllgdaalrqgrlaeAa.alyr 58 
                 + d ++A+ ++++a k++   P+  + +++l+++++  grla+A+  + r
  KOO25164.1 631 RDDLEQAEQLYKRAEKSN---PLLDDLHNNLALLYADSGRLAAALaTWQR 677
                 5579**************...************************77766 PP

  == domain 4  score: 27.7 bits;  conditional E-value: 2.7e-09
      TPR_16  11 gdyddAaaaleaalkrdpssPd.aaeAllllgdaalrqgrlaeAaalyraalraapda 67 
                 gd ++A+++++a+lk+d   P+ +a+ +++l+++++  gr +eA+ ++ + +  +pd+
  KOO25164.1 737 GDIAEAEPLYRALLKQD---PVyHADLYNNLALLLASSGRGTEARTVFSRGVSMWPDS 791
                 899**************...**9**************************999998885 PP

>> TPR_1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.0       2.7     3e+03       3      17 ..     524     538 ..     522     551 .. 0.77
   2 !   14.1   0.0   2.7e-05      0.03       5      32 ..     572     599 ..     569     601 .. 0.91
   3 ?    4.3   0.2     0.034        38      15      32 ..     632     649 ..     629     649 .. 0.85
   4 !   11.3   0.0   0.00022      0.24       3      33 ..     654     684 ..     653     685 .. 0.89
   5 ?   -0.3   0.1         1   1.1e+03      15      32 ..     737     754 ..     736     755 .. 0.91
   6 !    6.3   0.0    0.0082       9.2       1      33 [.     758     790 ..     758     791 .. 0.88

  Alignments for each domain:
  == domain 1  score: -1.7 bits;  conditional E-value: 2.7
                 HHHHHHHHHHHTT-H CS
       TPR_1   3 alynlGnayfklgky 17 
                   +nlG  ++ + k 
  KOO25164.1 524 GRNNLGTELMWQSKS 538
                 569****99999875 PP

  == domain 2  score: 14.1 bits;  conditional E-value: 2.7e-05
                 HHHHHHHHHTT-HHHHHHHHHHHHHHST CS
       TPR_1   5 ynlGnayfklgkydeAleyyekALelnP 32 
                  nlG +  ++g++d A++ +++A+ l+ 
  KOO25164.1 572 LNLGSLKSQQGDLDAAVALFSRAVVLDQ 599
                 79**********************9996 PP

  == domain 3  score: 4.3 bits;  conditional E-value: 0.034
                 T-HHHHHHHHHHHHHHST CS
       TPR_1  15 gkydeAleyyekALelnP 32 
                  ++++A++ y++A + nP
  KOO25164.1 632 DDLEQAEQLYKRAEKSNP 649
                 699**********77776 PP

  == domain 4  score: 11.3 bits;  conditional E-value: 0.00022
                 HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT CS
       TPR_1   3 alynlGnayfklgkydeAleyyekALelnPn 33 
                  ++nl+++y   g++  Al+  ++  +l P+
  KOO25164.1 654 LHNNLALLYADSGRLAAALATWQRGSTLHPQ 684
                 79******************99998777775 PP

  == domain 5  score: -0.3 bits;  conditional E-value: 1
                 T-HHHHHHHHHHHHHHST CS
       TPR_1  15 gkydeAleyyekALelnP 32 
                 g+  eA+  y+  L+ +P
  KOO25164.1 737 GDIAEAEPLYRALLKQDP 754
                 999********9999998 PP

  == domain 6  score: 6.3 bits;  conditional E-value: 0.0082
                 HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT CS
       TPR_1   1 akalynlGnayfklgkydeAleyyekALelnPn 33 
                 a+ ++nl++++ + g+  eA   +++ ++  P+
  KOO25164.1 758 ADLYNNLALLLASSGRGTEARTVFSRGVSMWPD 790
                 799*************99999999888877776 PP

>> TPR_8  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.3   0.0   0.00013      0.15       4      31 ..     571     598 ..     569     600 .. 0.88
   2 ?    2.5   0.2      0.19   2.1e+02      15      32 ..     632     649 ..     629     649 .. 0.90
   3 ?    5.6   0.0     0.019        22       3      22 ..     654     673 ..     652     683 .. 0.89
   4 ?    3.0   0.0      0.13   1.4e+02      14      32 ..     736     754 ..     735     756 .. 0.92
   5 ?    5.5   0.0     0.021        23       1      30 [.     758     787 ..     758     791 .. 0.89

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 0.00013
                 HHHHHHHHHHTT-HHHHHHHHHHHHHHH CS
       TPR_8   4 yynlgsiylklgdyeeAkeyyekaleld 31 
                  +nlgs+ +++gd+++A++ + +a+ ld
  KOO25164.1 571 ILNLGSLKSQQGDLDAAVALFSRAVVLD 598
                 589******************9998665 PP

  == domain 2  score: 2.5 bits;  conditional E-value: 0.19
                 T-HHHHHHHHHHHHHHHH CS
       TPR_8  15 gdyeeAkeyyekaleldp 32 
                  d+e+A++ y++a + +p
  KOO25164.1 632 DDLEQAEQLYKRAEKSNP 649
                 599**********99887 PP

  == domain 3  score: 5.6 bits;  conditional E-value: 0.019
                 HHHHHHHHHHHTT-HHHHHH CS
       TPR_8   3 ayynlgsiylklgdyeeAke 22 
                 +++nl+++y + g++ +A +
  KOO25164.1 654 LHNNLALLYADSGRLAAALA 673
                 689**************976 PP

  == domain 4  score: 3.0 bits;  conditional E-value: 0.13
                 TT-HHHHHHHHHHHHHHHH CS
       TPR_8  14 lgdyeeAkeyyekaleldp 32 
                 +gd+ eA+  y+  l+ dp
  KOO25164.1 736 KGDIAEAEPLYRALLKQDP 754
                 79**************999 PP

  == domain 5  score: 5.5 bits;  conditional E-value: 0.021
                 CCHHHHHHHHHHHTT-HHHHHHHHHHHHHH CS
       TPR_8   1 aeayynlgsiylklgdyeeAkeyyekalel 30 
                 a++y+nl++++ + g+  eA  ++ + +++
  KOO25164.1 758 ADLYNNLALLLASSGRGTEARTVFSRGVSM 787
                 689******************999888776 PP

>> TPR_14  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.2   0.1      0.38   4.3e+02      18      42 ..     546     570 ..     545     572 .. 0.84
   2 !   10.0   0.1    0.0012       1.3       5      31 ..     572     598 ..     568     608 .. 0.84
   3 !    8.4   2.5    0.0038       4.2       1      42 [.     614     659 ..     614     661 .. 0.76
   4 !    8.2   0.7    0.0045         5       7      39 ..     658     690 ..     652     692 .. 0.91
   5 ?    6.1   0.2     0.021        23      15      32 ..     737     754 ..     736     764 .. 0.88
   6 !    9.2   0.0    0.0022       2.4       6      37 ..     763     794 ..     758     798 .. 0.88

  Alignments for each domain:
  == domain 1  score: 2.2 bits;  conditional E-value: 0.38
      TPR_14  18 deAiallrralalaPddaeawllla 42 
                 +eA++l++ +++++ +d +  +++a
  KOO25164.1 546 AEAERLFESLIQRDATDTASFIRYA 570
                 79***********999987777766 PP

  == domain 2  score: 10.0 bits;  conditional E-value: 0.0012
      TPR_14   5 lalaeallalGdpdeAiallrralala 31 
                 l l+++  ++Gd+d+A+al+ ra+ l+
  KOO25164.1 572 LNLGSLKSQQGDLDAAVALFSRAVVLD 598
                 56889999***************8765 PP

  == domain 3  score: 8.4 bits;  conditional E-value: 0.0038
      TPR_14   1 peallalaealla....lGdpdeAiallrralalaPddaeawllla 42 
                 p+al +la al +    ++d+++A++l++ra + +P  ++++  la
  KOO25164.1 614 PQALFKLATALHRrrasRDDLEQAEQLYKRAEKSNPLLDDLHNNLA 659
                 67899999998652222478************99997777776665 PP

  == domain 4  score: 8.2 bits;  conditional E-value: 0.0045
      TPR_14   7 laeallalGdpdeAiallrralalaPddaeawl 39 
                 la +++ +G++++A+a  +r   l+P++a +++
  KOO25164.1 658 LALLYADSGRLAAALATWQRGSTLHPQSALLQY 690
                 8999***********************998875 PP

  == domain 5  score: 6.1 bits;  conditional E-value: 0.021
      TPR_14  15 GdpdeAiallrralalaP 32 
                 Gd +eA+ l+r++l+++P
  KOO25164.1 737 GDIAEAEPLYRALLKQDP 754
                 899**************9 PP

  == domain 6  score: 9.2 bits;  conditional E-value: 0.0022
      TPR_14   6 alaeallalGdpdeAiallrralalaPddaea 37 
                  la +l+ +G+  eA++++ r ++ +Pd++ +
  KOO25164.1 763 NLALLLASSGRGTEARTVFSRGVSMWPDSQLL 794
                 58999***********************9876 PP

>> TPR_11  TPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.9   0.0    0.0005      0.56       6      26 ..     580     600 ..     575     602 .. 0.91
   2 ?   -1.8   0.0       2.3   2.6e+03      27      40 ..     613     626 ..     611     627 .. 0.87
   3 !   15.7   0.7   7.8e-06    0.0087       6      42 .]     630     666 ..     626     666 .. 0.92
   4 !   10.2   0.0   0.00042      0.47       3      32 ..     661     690 ..     660     691 .. 0.93
   5 ?    4.3   0.6     0.028        31       7      41 ..     736     771 ..     736     772 .. 0.86

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.0005
      TPR_11   6 eqGkyeeAieaYkkAlkldPd 26 
                 +qG++++A++ +++A+ ld++
  KOO25164.1 580 QQGDLDAAVALFSRAVVLDQQ 600
                 8******************86 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 2.3
      TPR_11  27 naeayynLGlayyk 40 
                 ++ a+++L+ a+++
  KOO25164.1 613 SPQALFKLATALHR 626
                 799******99986 PP

  == domain 3  score: 15.7 bits;  conditional E-value: 7.8e-06
      TPR_11   6 eqGkyeeAieaYkkAlkldPdnaeayynLGlayykqG 42 
                 ++ ++e+A + Yk+A k +P   ++++nL+l+y+  G
  KOO25164.1 630 SRDDLEQAEQLYKRAEKSNPLLDDLHNNLALLYADSG 666
                 67799****************************9876 PP

  == domain 4  score: 10.2 bits;  conditional E-value: 0.00042
      TPR_11   3 ayyeqGkyeeAieaYkkAlkldPdnaeayy 32 
                 +y + G++ +A++ +++   l P++a + y
  KOO25164.1 661 LYADSGRLAAALATWQRGSTLHPQSALLQY 690
                 599***********************9988 PP

  == domain 5  score: 4.3 bits;  conditional E-value: 0.028
      TPR_11   7 qGkyeeAieaYkkAlkldPdn.aeayynLGlayykq 41 
                 +G++ eA   Y++ lk dP + a++y+nL+l+++  
  KOO25164.1 736 KGDIAEAEPLYRALLKQDPVYhADLYNNLALLLASS 771
                 68888888899999999999889*******998765 PP

>> TPR_19  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.1   0.6    0.0035       3.9       8      56 ..     546     599 ..     545     605 .. 0.69
   2 !   11.3   4.5   0.00034      0.38       5      59 ..     632     686 ..     629     691 .. 0.90
   3 !   17.5   0.0   3.8e-06    0.0043       5      57 ..     737     790 ..     736     796 .. 0.90

  Alignments for each domain:
  == domain 1  score: 8.1 bits;  conditional E-value: 0.0035
      TPR_19   8 aeAlalleqalqedpknaearl.....lLAeallalgqldeAealLdalpeedp 56 
                 aeA +l+e+++q d+ + +  +     +L  +  ++g+ld+A al +++   d+
  KOO25164.1 546 AEAERLFESLIQRDATDTASFIryailNLGSLKSQQGDLDAAVALFSRAVVLDQ 599
                 688889999888888866665511222456677799999999998888765555 PP

  == domain 2  score: 11.3 bits;  conditional E-value: 0.00034
      TPR_19   5 gdyaeAlalleqalqedpknaearllLAeallalgqldeAealLdalpeedpdda 59 
                  d+++A +l+++a + +p  +++  +LA ++  +g+l++A a+ ++     p++a
  KOO25164.1 632 DDLEQAEQLYKRAEKSNPLLDDLHNNLALLYADSGRLAAALATWQRGSTLHPQSA 686
                 79***********999**************************9999888888755 PP

  == domain 3  score: 17.5 bits;  conditional E-value: 3.8e-06
      TPR_19   5 gdyaeAlalleqalqedpk.naearllLAeallalgqldeAealLdalpeedpd 57 
                 gd aeA +l++++l++dp  +a++  +LA +l ++g+ +eA+ + ++   + pd
  KOO25164.1 737 GDIAEAEPLYRALLKQDPVyHADLYNNLALLLASSGRGTEARTVFSRGVSMWPD 790
                 9******************9***********************99887666555 PP

>> TPR_2  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.1         6   6.7e+03      18      31 ..     546     559 ..     545     562 .. 0.83
   2 !    9.3   0.0    0.0011       1.3       5      32 ..     572     599 ..     569     601 .. 0.88
   3 ?    4.1   0.6     0.055        61      14      32 ..     631     649 ..     614     651 .. 0.90
   4 !   11.5   0.0   0.00024      0.27       3      33 ..     654     684 ..     652     685 .. 0.89
   5 ?    4.5   0.1     0.039        44      15      32 ..     737     754 ..     736     754 .. 0.95
   6 !    6.5   0.0    0.0092        10       1      27 [.     758     784 ..     758     787 .. 0.91

  Alignments for each domain:
  == domain 1  score: -2.3 bits;  conditional E-value: 6
       TPR_2  18 eeAleafekAleld 31 
                 +eA+++fe  ++ d
  KOO25164.1 546 AEAERLFESLIQRD 559
                 69******999877 PP

  == domain 2  score: 9.3 bits;  conditional E-value: 0.0011
       TPR_2   5 ynlGlayyklgdyeeAleafekAleldP 32 
                  nlG +  ++gd++ A+++f +A+ ld 
  KOO25164.1 572 LNLGSLKSQQGDLDAAVALFSRAVVLDQ 599
                 68999999****************9985 PP

  == domain 3  score: 4.1 bits;  conditional E-value: 0.055
       TPR_2  14 lgdyeeAleafekAleldP 32 
                 ++d+e+A++++++A + +P
  KOO25164.1 631 RDDLEQAEQLYKRAEKSNP 649
                 5799**********99988 PP

  == domain 4  score: 11.5 bits;  conditional E-value: 0.00024
       TPR_2   3 alynlGlayyklgdyeeAleafekAleldPn 33 
                 +++nl+l+y+ +g+++ Al+ +++   l P+
  KOO25164.1 654 LHNNLALLYADSGRLAAALATWQRGSTLHPQ 684
                 79********************998777775 PP

  == domain 5  score: 4.5 bits;  conditional E-value: 0.039
       TPR_2  15 gdyeeAleafekAleldP 32 
                 gd +eA+ ++++ l+ dP
  KOO25164.1 737 GDIAEAEPLYRALLKQDP 754
                 99**************99 PP

  == domain 6  score: 6.5 bits;  conditional E-value: 0.0092
       TPR_2   1 aealynlGlayyklgdyeeAleafekA 27 
                 a++++nl+l+++ +g+  eA+  f + 
  KOO25164.1 758 ADLYNNLALLLASSGRGTEARTVFSRG 784
                 689*******************99875 PP

>> TPR_12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.2   0.2   0.00015      0.17       5      30 ..     571     595 ..     544     603 .. 0.66
   2 !   12.8   3.0   9.9e-05      0.11      15      66 ..     623     673 ..     615     683 .. 0.86
   3 !    9.2   0.0    0.0013       1.4      17      72 ..     737     785 ..     736     790 .. 0.67

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 0.00015
      TPR_12   5 alnnlaavlrrlgrydeAlellekal 30 
                 +l nl+++  ++g++d A +l+ +a+
  KOO25164.1 571 IL-NLGSLKSQQGDLDAAVALFSRAV 595
                 33.66666666666666666666665 PP

  == domain 2  score: 12.8 bits;  conditional E-value: 9.9e-05
      TPR_12  15 rlgrydeAlellekaleiarrllGpdhpltattlrnLgrlyralgryeeAle 66 
                 +l r   +++ le+a ++++r+ ++ +pl+    +nL+ ly  +gr+++Al+
  KOO25164.1 623 ALHRRRASRDDLEQAEQLYKRA-EKSNPLLDDLHNNLALLYADSGRLAAALA 673
                 455566799**********888.6889***********************97 PP

  == domain 3  score: 9.2 bits;  conditional E-value: 0.0013
      TPR_12  17 grydeAlellekaleiarrllGpdhpltattlrnLgrlyralgryeeAlelleeal 72 
                 g+ +eA+ l+++ l +      p +   a  ++nL+ l+  +gr  eA+  + + +
  KOO25164.1 737 GDIAEAEPLYRALLKQD-----PVY--HADLYNNLALLLASSGRGTEARTVFSRGV 785
                 55666666666666666.....444..68888888888888888888887776655 PP

>> TPR_17  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.1   0.0      0.28   3.1e+02       6      33 ..     556     588 ..     551     589 .. 0.61
   2 ?    3.3   0.0      0.12   1.3e+02      13      34 .]     614     639 ..     612     639 .. 0.87
   3 !   12.5   1.2   0.00014      0.15       1      33 [.     640     672 ..     640     673 .. 0.91
   4 !   15.1   0.2     2e-05     0.022       1      32 [.     745     777 ..     745     779 .. 0.87

  Alignments for each domain:
  == domain 1  score: 2.1 bits;  conditional E-value: 0.28
      TPR_17   6 leldPnnadaynnLAelll.....knGdlmtAr 33 
                 +++d ++  ++  +A l l     ++Gdl+ A+
  KOO25164.1 556 IQRDATDTASFIRYAILNLgslksQQGDLDAAV 588
                 55555555555555555555555599**99996 PP

  == domain 2  score: 3.3 bits;  conditional E-value: 0.12
      TPR_17  13 adaynnLAelll....knGdlmtArq 34 
                 + a++ LA++l+    ++ dl++A+q
  KOO25164.1 614 PQALFKLATALHrrraSRDDLEQAEQ 639
                 679********988888889999997 PP

  == domain 3  score: 12.5 bits;  conditional E-value: 0.00014
      TPR_17   1 lylkaleldPnnadaynnLAelllknGdlmtAr 33 
                 ly++a + +P   d++nnLA l++  G+l+ A+
  KOO25164.1 640 LYKRAEKSNPLLDDLHNNLALLYADSGRLAAAL 672
                 68888889*********************9996 PP

  == domain 4  score: 15.1 bits;  conditional E-value: 2e-05
      TPR_17   1 lylkaleldPnn.adaynnLAelllknGdlmtA 32 
                 ly+  l++dP + ad+ynnLA ll++ G+  +A
  KOO25164.1 745 LYRALLKQDPVYhADLYNNLALLLASSGRGTEA 777
                 799********66************99975555 PP

>> TPR_7  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.4   0.1   5.2e-05     0.059       1      32 [.     570     599 ..     570     611 .. 0.84
   2 ?    4.0   0.2     0.054        60       2      27 ..     617     644 ..     616     651 .. 0.75
   3 ?    3.6   0.1      0.07        79       2      20 ..     655     673 ..     654     686 .. 0.85
   4 ?    0.6   0.0      0.63   7.1e+02      13      30 ..     737     752 ..     736     754 .. 0.79
   5 ?    2.1   0.0      0.21   2.4e+02       2      24 ..     761     783 ..     760     792 .. 0.85

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 5.2e-05
       TPR_7   1 aLlnLarlysrlGdyeeAielyeqsLaltkdp 32 
                 a+lnL++l s++Gd + A+ l+ +  a+  d+
  KOO25164.1 570 AILNLGSLKSQQGDLDAAVALFSR--AVVLDQ 599
                 689********************9..554443 PP

  == domain 2  score: 4.0 bits;  conditional E-value: 0.054
       TPR_7   2 LlnLarl.ysr...lGdyeeAielyeqsLa 27 
                 L+ La + ++r   + d e+A++ly++  a
  KOO25164.1 617 LFKLATAlHRRrasRDDLEQAEQLYKR--A 644
                 5566666344478899**********9..5 PP

  == domain 3  score: 3.6 bits;  conditional E-value: 0.07
       TPR_7   2 LlnLarlysrlGdyeeAie 20 
                 ++nLa ly + G+ + A+ 
  KOO25164.1 655 HNNLALLYADSGRLAAALA 673
                 69***********999986 PP

  == domain 4  score: 0.6 bits;  conditional E-value: 0.63
       TPR_7  13 GdyeeAielyeqsLaltk 30 
                 Gd +eA+ ly++   l  
  KOO25164.1 737 GDIAEAEPLYRA--LLKQ 752
                 8999*******9..5554 PP

  == domain 5  score: 2.1 bits;  conditional E-value: 0.21
       TPR_7   2 LlnLarlysrlGdyeeAielyeq 24 
                 ++nLa l  + G+  eA +++ +
  KOO25164.1 761 YNNLALLLASSGRGTEARTVFSR 783
                 89***********9999998866 PP

>> TPR_10  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.3   0.1   0.00021      0.24       5      30 ..     571     596 ..     569     602 .. 0.86
   2 ?    0.9   0.5      0.41   4.6e+02      14      28 ..     630     644 ..     620     648 .. 0.66
   3 !    7.8   0.5    0.0028       3.2       6      23 ..     656     673 ..     656     675 .. 0.96
   4 ?   -2.3   0.0       4.1   4.6e+03      16      27 ..     737     748 ..     737     751 .. 0.80
   5 !   13.3   0.0   5.1e-05     0.057       2      25 ..     758     781 ..     757     788 .. 0.85

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00021
      TPR_10   5 lnNLanalrqrgrydeAealleeala 30 
                   NL+ + +q+g++d+A+al+ +a+ 
  KOO25164.1 571 ILNLGSLKSQQGDLDAAVALFSRAVV 596
                 67******************999985 PP

  == domain 2  score: 0.9 bits;  conditional E-value: 0.41
      TPR_10  14 qrgrydeAealleea 28 
                 +r ++++Ae+l+++a
  KOO25164.1 630 SRDDLEQAEQLYKRA 644
                 355666666666665 PP

  == domain 3  score: 7.8 bits;  conditional E-value: 0.0028
      TPR_10   6 nNLanalrqrgrydeAea 23 
                 nNLa ++ + gr+++A+a
  KOO25164.1 656 NNLALLYADSGRLAAALA 673
                 9***************86 PP

  == domain 4  score: -2.3 bits;  conditional E-value: 4.1
      TPR_10  16 grydeAeallee 27 
                 g+ +eAe l++ 
  KOO25164.1 737 GDIAEAEPLYRA 748
                 6889****9986 PP

  == domain 5  score: 13.3 bits;  conditional E-value: 5.1e-05
      TPR_10   2 AsslnNLanalrqrgrydeAeall 25 
                 A  +nNLa +l + gr++eA+  +
  KOO25164.1 758 ADLYNNLALLLASSGRGTEARTVF 781
                 678*****************9765 PP

>> BTAD  Bacterial transcriptional activator domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   3.7   1.1e-05     0.012      11     122 ..     573     678 ..     561     683 .. 0.81
   2 ?    3.2   0.0     0.097   1.1e+02      76     122 ..     737     784 ..     733     789 .. 0.89

  Alignments for each domain:
  == domain 1  score: 16.1 bits;  conditional E-value: 1.1e-05
                 HHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHT CS
        BTAD  11 aagraalaagdpeeaaelleaAlalwrGpaladleagewleaererleelrlealealaeaelrlGraeealaelealvaehPlrErlhrqlmrAlars 109
                 + g  ++++gd ++a++l+++A+ l  ++ l+ l+ ++  ea  ++l +l+ + ++++a       + e+a + ++++ + +Pl ++lh  l + +a s
  KOO25164.1 573 NLGSLKSQQGDLDAAVALFSRAVVL--DQQLNALRGRRGGEASPQALFKLATALHRRRAS----RDDLEQAEQLYKRAEKSNPLLDDLHNNLALLYADS 665
                 4566777888899999988888876..888888888899999999999999999999988....66667777777788899****************** PP

                 T-HHHHHHHHHHH CS
        BTAD 110 GrqaeALevYerl 122
                 Gr a+AL++++r 
  KOO25164.1 666 GRLAAALATWQRG 678
                 *********9986 PP

  == domain 2  score: 3.2 bits;  conditional E-value: 0.097
                 T-HHHHHHHHHHHHHHST.T-HHHHHHHHHHHHHTT-HHHHHHHHHHH CS
        BTAD  76 GraeealaelealvaehP.lrErlhrqlmrAlarsGrqaeALevYerl 122
                 G+++ea + ++al++++P ++ +l+  l + la sGr  eA +v+ r 
  KOO25164.1 737 GDIAEAEPLYRALLKQDPvYHADLYNNLALLLASSGRGTEARTVFSRG 784
                 7889999999********44789******************9999886 PP

>> DUF4810  Domain of unknown function (DUF4810)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.0       2.6   2.9e+03      50      69 ..     573     592 ..     570     595 .. 0.90
   2 !    7.5   0.0    0.0054         6      35      79 ..     643     686 ..     616     690 .. 0.77
   3 !    8.4   0.0    0.0027       3.1      47      80 ..     760     793 ..     751     797 .. 0.91

  Alignments for each domain:
  == domain 1  score: -1.1 bits;  conditional E-value: 2.6
     DUF4810  50 elGllylkegkkeeaieafe 69 
                 +lG l +++g+ + a++ f+
  KOO25164.1 573 NLGSLKSQQGDLDAAVALFS 592
                 699*************9996 PP

  == domain 2  score: 7.5 bits;  conditional E-value: 0.0054
     DUF4810  35 kaeakgkkvpPGlyAelGllylkegkkeeaieafekEkelfPESa 79 
                 +a +k++++   l+ +l+lly+++g+ + a +  ++  +l+P Sa
  KOO25164.1 643 RA-EKSNPLLDDLHNNLALLYADSGRLAAALATWQRGSTLHPQSA 686
                 33.444555567899***************************998 PP

  == domain 3  score: 8.4 bits;  conditional E-value: 0.0027
     DUF4810  47 lyAelGllylkegkkeeaieafekEkelfPESat 80 
                 ly +l+ll++++g+  ea++ f++  + +P S+ 
  KOO25164.1 760 LYNNLALLLASSGRGTEARTVFSRGVSMWPDSQL 793
                 57789***************************85 PP

>> TPR_6  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.1       2.5   2.9e+03      17      29 ..     546     558 ..     545     561 .. 0.87
   2 !    7.7   0.0    0.0054       6.1       1      26 [.     569     594 ..     569     596 .. 0.92
   3 !    7.3   0.4    0.0072         8       1      31 [.     615     649 ..     615     650 .. 0.89
   4 ?    2.1   0.0      0.33   3.7e+02       5      25 ..     657     677 ..     657     685 .. 0.83
   5 ?   -0.3   0.0       1.9   2.2e+03      14      31 ..     737     754 ..     715     754 .. 0.88
   6 ?   -1.3   0.0       3.9   4.4e+03       6      32 ..     764     790 ..     763     791 .. 0.75

  Alignments for each domain:
  == domain 1  score: -0.7 bits;  conditional E-value: 2.5
                 HHHHHHHHHHHHH CS
       TPR_6  17 dkAlealerlike 29 
                 ++A +++e+li++
  KOO25164.1 546 AEAERLFESLIQR 558
                 6899*******98 PP

  == domain 2  score: 7.7 bits;  conditional E-value: 0.0054
                 HHHHHHHHHHHHHHHHHHHHHHHHHH CS
       TPR_6   1 dAlyklalsyrklgdtdkAlealerl 26 
                 +A ++l+ +  ++gd d+A++++ r 
  KOO25164.1 569 YAILNLGSLKSQQGDLDAAVALFSRA 594
                 799********************987 PP

  == domain 3  score: 7.3 bits;  conditional E-value: 0.0072
                 HHHHHHHHHHHHH....HHHHHHHHHHHHHHHH-T CS
       TPR_6   1 dAlyklalsyrkl....gdtdkAlealerlikeYP 31 
                 +Al+kla ++ +     +d ++A ++++r  k+ P
  KOO25164.1 615 QALFKLATALHRRrasrDDLEQAEQLYKRAEKSNP 649
                 69*****99999669*99**********9877766 PP

  == domain 4  score: 2.1 bits;  conditional E-value: 0.33
                 HHHHHHHHHHHHHHHHHHHHH CS
       TPR_6   5 klalsyrklgdtdkAlealer 25 
                 +lal+y   g+ ++Al++++r
  KOO25164.1 657 NLALLYADSGRLAAALATWQR 677
                 589****977*********98 PP

  == domain 5  score: -0.3 bits;  conditional E-value: 1.9
                 HHHHHHHHHHHHHHHH-T CS
       TPR_6  14 gdtdkAlealerlikeYP 31 
                 gd ++A  +++ l+k+ P
  KOO25164.1 737 GDIAEAEPLYRALLKQDP 754
                 69999999******9987 PP

  == domain 6  score: -1.3 bits;  conditional E-value: 3.9
                 HHHHHHHHHHHHHHHHHHHHHHHH-TT CS
       TPR_6   6 lalsyrklgdtdkAlealerlikeYPd 32 
                 lal++ + g+ ++A++ + r ++ +Pd
  KOO25164.1 764 LALLLASSGRGTEARTVFSRGVSMWPD 790
                 788888867999****99885555555 PP

>> TPR_4  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.3         9     1e+04      18      25 ..     546     553 ..     545     554 .. 0.85
   2 ?    5.4   0.0     0.033        37       7      24 ..     574     591 ..     572     593 .. 0.78
   3 ?   -0.5   2.1       2.5   2.8e+03       2      22 ..     615     639 ..     614     643 .. 0.56
   4 ?   12.7   2.2   0.00014      0.16       4      26 .]     655     677 ..     654     677 .. 0.92
   5 ?    0.5   0.1       1.2   1.4e+03      15      25 ..     737     747 ..     737     748 .. 0.90
   6 ?    5.1   0.0      0.04        45       6      24 ..     763     781 ..     758     783 .. 0.89

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 9
       TPR_4  18 deAralle 25 
                 +eA++l+e
  KOO25164.1 546 AEAERLFE 553
                 89***998 PP

  == domain 2  score: 5.4 bits;  conditional E-value: 0.033
       TPR_4   7 LArallalGdldeArall 24 
                 L+ +  ++Gdld+A al+
  KOO25164.1 574 LGSLKSQQGDLDAAVALF 591
                 5555668********996 PP

  == domain 3  score: -0.5 bits;  conditional E-value: 2.5
       TPR_4   2 rallaLArallal....GdldeAra 22 
                 +al  LA al+++     dl++A++
  KOO25164.1 615 QALFKLATALHRRrasrDDLEQAEQ 639
                 5666677777764111166666666 PP

  == domain 4  score: 12.7 bits;  conditional E-value: 0.00014
       TPR_4   4 llaLArallalGdldeAraller 26 
                 + +LA ++++ G+l++A+a+++r
  KOO25164.1 655 HNNLALLYADSGRLAAALATWQR 677
                 669*****************987 PP

  == domain 5  score: 0.5 bits;  conditional E-value: 1.2
       TPR_4  15 GdldeAralle 25 
                 Gd +eA+ l +
  KOO25164.1 737 GDIAEAEPLYR 747
                 9******9988 PP

  == domain 6  score: 5.1 bits;  conditional E-value: 0.04
       TPR_4   6 aLArallalGdldeArall 24 
                 +LA +l+  G+  eAr+++
  KOO25164.1 763 NLALLLASSGRGTEARTVF 781
                 8***************985 PP

>> Wzy_C_2  Virulence factor membrane-bound polymerase, C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.7   0.6     0.012        13     120     177 ..     628     686 ..     614     694 .. 0.84
   2 ?    9.7   0.0   0.00068      0.76     124     180 ..     737     795 ..     732     800 .. 0.85

  Alignments for each domain:
  == domain 1  score: 5.7 bits;  conditional E-value: 0.012
     Wzy_C_2 120 plspenlaaklalarklihlsPe.pavierlilslallGdedeAeqilararalfpeed 177
                  +s+++l++  +l++++ ++ P    + ++l+l++a +G+ ++A+ + +r   l+p+++
  KOO25164.1 628 RASRDDLEQAEQLYKRAEKSNPLlDDLHNNLALLYADSGRLAAALATWQRGSTLHPQSA 686
                 567888888888888888888862568899**************************976 PP

  == domain 2  score: 9.7 bits;  conditional E-value: 0.00068
     Wzy_C_2 124 enlaaklalarklihlsP..epavierlilslallGdedeAeqilararalfpeedakw 180
                  ++a+  +l+r+l++  P   + ++++l+l+la +G+  eA+++ +r   ++p+++  +
  KOO25164.1 737 GDIAEAEPLYRALLKQDPvyHADLYNNLALLLASSGRGTEARTVFSRGVSMWPDSQLLQ 795
                 567888899999999999545789************************99999987555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (806 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       771  (0.043003); expected 358.6 (0.02)
Passed bias filter:                      465  (0.0259356); expected 358.6 (0.02)
Passed Vit filter:                        57  (0.00317921); expected 17.9 (0.001)
Passed Fwd filter:                        16  (0.000892409); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              16  [number of targets reported over threshold]
# CPU time: 0.65u 0.29s 00:00:00.94 Elapsed: 00:00:00.42
# Mc/sec: 5750.86
//
Query:       KOO25165.1  [L=156]
Description: hypothetical protein Ctob_010282 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (156 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       305  (0.0170115); expected 358.6 (0.02)
Passed bias filter:                      158  (0.00881254); expected 358.6 (0.02)
Passed Vit filter:                        10  (0.000557756); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.23s 00:00:00.61 Elapsed: 00:00:00.39
# Mc/sec: 1192.34
//
Query:       KOO25166.1  [L=659]
Description: hypothetical protein Ctob_001744 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.8e-05   23.5   9.7       0.48   10.9   0.1    4.6  4  Agenet    Agenet domain


Domain annotation for each model (and alignments):
>> Agenet  Agenet domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.8   0.6   0.00052       9.3       3      50 ..     371     414 ..     367     432 .. 0.68
   2 !   10.9   0.1   2.7e-05      0.48       4      42 ..     512     553 ..     511     565 .. 0.83
   3 ?    2.1   0.1     0.016   2.8e+02      46      57 ..     575     586 ..     568     600 .. 0.79
   4 !    6.5   0.1   0.00067        12       1      59 [.     603     656 ..     603     657 .. 0.66

  Alignments for each domain:
  == domain 1  score: 6.8 bits;  conditional E-value: 0.00052
      Agenet   3 kVEvlsdeegfrGaWfrAtilkv.kegd.kylVeYddlddddgskpleEw 50 
                 +VEv   e+ + + W++A ++ v  +g  ++ +  +d     gs+  e w
  KOO25166.1 371 EVEVAASEDAPAV-WVPAEVIAVlVDGTfQARIVLPD-----GSDQWEDW 414
                 6888888999966.*******9953333455555555.....55555555 PP

  == domain 2  score: 10.9 bits;  conditional E-value: 2.7e-05
      Agenet   4 VEvlsdeegfrGaWfrAtilkv...kegdkylVeYddldddd 42 
                 VEv  ++eg+ G+ + At l+      ++++ VeY++++  d
  KOO25166.1 512 VEVQMQDEGLVGSKYAATLLRWrgaAWRSEAFVEYEEFEAAD 553
                 9*********************6666666******9944333 PP

  == domain 3  score: 2.1 bits;  conditional E-value: 0.016
      Agenet  46 pleEwvdasdiR 57 
                 +l+Ewv+as i 
  KOO25166.1 575 KLREWVPASAIA 586
                 79*******876 PP

  == domain 4  score: 6.5 bits;  conditional E-value: 0.00067
      Agenet   1 GdkVEvlsdeegfrGaWfrAtilkvkegdkylVeYdd...lddddgskpleEwvdasdiRPl 59 
                 G++VE++++     G W++  i+++ +   ++V+  +   +  +  +  ++ +v+a  +RP+
  KOO25166.1 603 GNEVEAYHE----GG-WWSVRIISR-R--AASVRLGEepqFVVEAVGYGIQRTVSAANLRPC 656
                 889999977....55.*********.3..555555554433333333555667888888886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (659 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       668  (0.0372581); expected 358.6 (0.02)
Passed bias filter:                      410  (0.022868); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.58u 0.28s 00:00:00.86 Elapsed: 00:00:00.43
# Mc/sec: 4620.25
//
Query:       KOO25167.1  [L=179]
Description: hypothetical protein Ctob_001745 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.2e-06   27.2   0.1    7.2e-06   26.0   0.1    1.6  1  DnaJ      DnaJ domain
  ------ inclusion threshold ------
      0.062   13.5   0.4        3.5    7.9   0.1    2.2  2  Death     Death domain
        1.4    7.8   5.9        1.8    7.4   5.9    1.3  1  DUF3435   Protein of unknown function (DUF3435)


Domain annotation for each model (and alignments):
>> DnaJ  DnaJ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.0   0.1   1.2e-09   7.2e-06      13      50 ..     126     168 ..     119     170 .. 0.80

  Alignments for each domain:
  == domain 1  score: 26.0 bits;  conditional E-value: 1.2e-09
                 -HHHHHHHHHHHHHHHSTTTSCCHH.....HHHHHHHHHHHHH CS
        DnaJ  13 sedeIkkaYrklalkyHPDknpkdp.....eaeekFkeineAy 50 
                  ++++kka++kla k+HPD++++++      aee Fk ++ Ay
  KOO25167.1 126 HAAQLKKAWHKLAAKLHPDRQQQNSvatqvLAEEVFKALTIAY 168
                 5789***************986666444457888999999999 PP

>> Death  Death domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.8   0.0     0.011        64      36      57 ..      74      94 ..      61     104 .. 0.78
   2 ?    7.9   0.1   0.00058       3.5      10      54 ..     126     168 ..     123     177 .. 0.81

  Alignments for each domain:
  == domain 1  score: 3.8 bits;  conditional E-value: 0.011
                HHSSSTHHHHHHHHHHHHHHHH CS
       Death 36 ekennslrsqsyalLqlWedre 57
                +++ +s + q+ +lL++W  r+
  KOO25167.1 74 KQR-ESKKHQADKLLHEWLGRT 94
                444.48899*********9874 PP

  == domain 2  score: 7.9 bits;  conditional E-value: 0.00058
                 CSTCCSCCHHHHHHHTTSHHHHHHHHHHSSSTHHHHHHHHHHHHH CS
       Death  10 hpdplgkdWkelarkLglseeeidriekennslrsqsyalLqlWe 54 
                 h   l k W++la kL+ ++++ ++++++   l++ + + L++ +
  KOO25167.1 126 HAAQLKKAWHKLAAKLHPDRQQQNSVATQV--LAEEVFKALTIAY 168
                 4556899**************999999999..8888888777655 PP

>> DUF3435  Protein of unknown function (DUF3435)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.4   5.9    0.0003       1.8     268     319 ..      30      98 ..      25     171 .. 0.68

  Alignments for each domain:
  == domain 1  score: 7.4 bits;  conditional E-value: 0.0003
     DUF3435 268 iDprrPkeLtdeqkasveedpelqelkrkreelkkeleakygqvakakgte.................l 319
                   +rrP + t++++a++e+ pe++ +k  +e l ++++ +  + ++++ ++                  
  KOO25167.1  30 KQKRRPAKATEATRAAAEAAPEVTPRKTGVEALHERRRVEEATFKQRESKKhqadkllhewlgrtrgdV 98 
                 579*******************************97777666666665555555555444444444440 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (179 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       891  (0.049696); expected 358.6 (0.02)
Passed bias filter:                      378  (0.0210832); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.42u 0.22s 00:00:00.64 Elapsed: 00:00:00.38
# Mc/sec: 1403.64
//
Query:       KOO25168.1  [L=417]
Description: hypothetical protein Ctob_001742 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.2e-17   63.0  28.8    6.2e-09   35.2  10.6    2.1  2  MFS_1     Major Facilitator Superfamily
  ------ inclusion threshold ------
        7.1    5.4  14.2        2.4    6.9   4.7    2.1  2  Sugar_tr  Sugar (and other) transporter


Domain annotation for each model (and alignments):
>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.8  10.2     2e-12   1.8e-08      42     207 ..      26     192 ..      19     224 .. 0.61
   2 !   35.2  10.6   6.9e-13   6.2e-09       2     183 ..     226     408 ..     225     417 .] 0.76

  Alignments for each domain:
  == domain 1  score: 33.8 bits;  conditional E-value: 2e-12
       MFS_1  42 algaavaslplGrlsdrfGrrrvlllglllfalg.lllllf.a.sslwlllvlrvlqGlgagalfpagaaliadwfpke.....ergraigllsagfsl 132
                 + + +v++ ++Gr sdrfGr ++l+lgl++++l+ ++ l + +  ++w+ +v  +l        f ++ al++d++        + + a+g l+++++l
  KOO25168.1  26 SGLNLVGATVIGRASDRFGRMPMLWLGLAATLLSiAINLGMdSvEGMWYAIVPTALLNQ----NFGVSKALLTDYVEAAggskaDLAGAVGKLGMCIGL 120
                 556799****************************5555557324666644444444444....444555555555544444444*************** PP

       MFS_1 133 GailgpllggllasslgWravfyilaivsllafv....lfllllpeepperkrkspkeeekgtgpaplvpawkallkdp 207
                 +++ gpll+ ll++s+  + +  +  ++++ ++v    l      +ep+  +   ++      +p+p++p  +  +  +
  KOO25168.1 121 SFMAGPLLATLLVTSY--TQALTLSLLLAASSGVllllLPTTARKAEPKVAPDAVQRAM----QPTPATP-MSDARPAQ 192
                 *************665..45555555555555550000333333444444444333333....5555555.33333222 PP

  == domain 2  score: 35.2 bits;  conditional E-value: 6.9e-13
       MFS_1   2 llaaflsalarsilgpalplalaedlgispse....igllltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllllfasslw.lllvlrvlq 95 
                 l++ +l+ala+ +++p+    +++ + ++p+     +gl+  +yal +++ + pl rl  r ++r +ll+ ++l ++   ++l a+++  ++++l v +
  KOO25168.1 226 LVLRLLMALAFHLYAPIWQVSIKRRFDFTPADharfMGLIGLTYALSQGAVAKPLIRLFGRDSSRLLLLCVAVLGGFR-PIAL-ATPHLeVVYALYVPM 322
                 56678999999999****99*******999998888999999999999888888888877766777666666666666.3444.456666********* PP

       MFS_1  96 GlgagalfpagaaliadwfpkeergraigllsagfslGailgpllggllasslg.Wravfyilaivsllafvlfllllpeepperkrks 183
                  ++ g++++a+ ++ + ++ +++ g  ig+l +  s++ ++gp lgglla++    ++++++++  ++++++    l++++++ ++ ++
  KOO25168.1 323 VIALGVMNTAISTACSSLADGDQLGGLIGVLESVESVAGMVGPTLGGLLAAWHDgLPLAMVLVCYGTAFVLI---SLFYRKHVLEGAEK 408
                 **************************************************6665455555555555555544...44444444443333 PP

>> Sugar_tr  Sugar (and other) transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.9   4.7   0.00027       2.4      60     166 ..      30     139 ..      21     162 .. 0.77
   2 ?    3.8   2.0    0.0023        21      65     166 ..     276     376 ..     270     411 .. 0.78

  Alignments for each domain:
  == domain 1  score: 6.9 bits;  conditional E-value: 0.00027
                 HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH-TTTTSS-TGGGGGHHHHHHHHHHHHHHHHHHHHTTS...-SCCH...HHHHHHHHHHHHHHHH CS
    Sugar_tr  60 iiGslfagllgdrfGRkkslliaavlfvigavlqaaakgknsvevlivgRvlvGigvGlasvlvPmyisEiA...pkklR...galvslyqlaitfGil 152
                 ++G+ ++g ++drfGR + l  + + ++ +++++   ++ + ++  iv   l+    G+  +l + y+   A   +++l+   g+l+++  l+  +G l
  KOO25168.1  30 LVGATVIGRASDRFGRMPMLWLGLAATLLSIAINLGMDSVEGMWYAIVPTALLNQNFGVSKALLTDYVEA-AggsKADLAgavGKLGMCIGLSFMAGPL 127
                 79********************99999999999999999999************9****99999999854.4355777773345678888888888888 PP

                 HHHHHHHHHHTSS- CS
    Sugar_tr 153 vaaifglglnktsn 166
                 +a+ +   +++t++
  KOO25168.1 128 LATLLV--TSYTQA 139
                 887754..444444 PP

  == domain 2  score: 3.8 bits;  conditional E-value: 0.0023
                 HHHHHHHHTTHHHHHHHHHHHHHHHHHHHH-TTTTSS-TGGGGGHHHHHHHHHHHHHHHHHHHHTTS-SCCHHHHHHHHHHHHHHHHHHHHHHHHHHHT CS
    Sugar_tr  65 fagllgdrfGRkkslliaavlfvigavlqaaakgknsvevlivgRvlvGigvGlasvlvPmyisEiApkklRgalvslyqlaitfGilvaaifglglnk 163
                 +a +l+  fGR +s l    ++v g++  +a   + ++ev+++  v + i++G+ ++ +++ +s +A  +  g l+++ ++  ++  +v+ ++g  l+ 
  KOO25168.1 276 VAKPLIRLFGRDSSRLLLLCVAVLGGFRPIALA-TPHLEVVYALYVPMVIALGVMNTAISTACSSLADGDQLGGLIGVLESVESVAGMVGPTLGGLLAA 373
                 57789999******************9877766.67*******************************77666666666666666666777776666666 PP

                 SS- CS
    Sugar_tr 164 tsn 166
                  ++
  KOO25168.1 374 WHD 376
                 655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (417 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       631  (0.0351944); expected 358.6 (0.02)
Passed bias filter:                      341  (0.0190195); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.46u 0.26s 00:00:00.72 Elapsed: 00:00:00.38
# Mc/sec: 3321.52
//
Query:       KOO25169.1  [L=512]
Description: hypothetical protein Ctob_001743 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (512 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       655  (0.036533); expected 358.6 (0.02)
Passed bias filter:                      387  (0.0215851); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.48u 0.23s 00:00:00.71 Elapsed: 00:00:00.38
# Mc/sec: 4069.49
//
Query:       KOO25170.1  [L=345]
Description: tryptophan tyrosine permease transporter [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    0.00034   19.5   1.3     0.0007   18.5   1.3    1.5  1  Spore_permease  Spore germination protein


Domain annotation for each model (and alignments):
>> Spore_permease  Spore germination protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.5   1.3   3.9e-08    0.0007      63     154 ..      19     111 ..      14     123 .. 0.77

  Alignments for each domain:
  == domain 1  score: 18.5 bits;  conditional E-value: 3.9e-08
  Spore_permease  63 ktliellkkilgkwLGsllsilfilyFlllaafelRefseliqvf..lledtplwiiilllllvilYlvvkGieslareflfiivilliillli 154
                      +++++++ +lg++L+ +l ++f +  l++a+ +l + +eli+v+  +l++  +++++++++ v+ +++++ +   + + ++  ++   +l ++
      KOO25170.1  19 ASVLSVSRRYLGTPLATVLAVVFFMQMLIIATANLVKAAELISVVfpALPHGRSIVLLATIFGVFNLVATSRVMASV-NTALTGTMCAGFLAFF 111
                     578999************************************97634688888999999999998888776554444.4444444444444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (345 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       597  (0.033298); expected 358.6 (0.02)
Passed bias filter:                      203  (0.0113224); expected 358.6 (0.02)
Passed Vit filter:                        11  (0.000613531); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.25s 00:00:00.65 Elapsed: 00:00:00.38
# Mc/sec: 2746.62
//
Query:       KOO25171.1  [L=133]
Description: hypothetical protein Ctob_001747 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (133 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       167  (0.00931452); expected 358.6 (0.02)
Passed bias filter:                      141  (0.00786435); expected 358.6 (0.02)
Passed Vit filter:                        10  (0.000557756); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.25s 00:00:00.62 Elapsed: 00:00:00.40
# Mc/sec: 985.98
//
Query:       KOO25172.1  [L=352]
Description: wd40 repeat-like protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.1e-71  234.9  27.0    1.1e-09   38.7   0.2    7.2  7  WD40            WD domain, G-beta repeat
    5.8e-21   74.8   8.7      0.017   14.1   0.0    7.0  7  Ge1_WD40        WD40 region of Ge1, enhancer of mRNA-decappin
    7.5e-20   71.0   5.1      0.069   13.5   0.0    7.0  7  ANAPC4_WD40     Anaphase-promoting complex subunit 4 WD40 dom
    1.1e-15   57.1   1.6       0.23   11.4   0.0    7.0  7  PD40            WD40-like Beta Propeller Repeat
    2.8e-11   43.4   1.7        4.5    7.4   0.0    6.9  7  BBS2_Mid        Ciliary BBSome complex subunit 2, middle regi
    1.1e-10   40.4   0.0      0.067   11.5   0.0    4.7  5  Frtz            WD repeat-containing and planar cell polarity
    1.1e-07   31.8   0.0        8.5    6.6   0.0    6.6  7  DCX             Doublecortin
    1.3e-05   24.7   0.7        6.8    5.9   0.0    5.1  5  WD40_like       WD40-like domain
    7.2e-05   22.9   0.3         32    4.7   0.0    5.7  7  Plk4_PB1        Polo-like Kinase 4 Polo Box 1
     0.0022   17.9   1.7    1.5e+02    2.4   0.0    6.2  7  WD40_3          WD domain, G-beta repeat
     0.0044   17.7   2.8        3.7    8.3   0.1    4.5  6  dsrm            Double-stranded RNA binding motif
  ------ inclusion threshold ------
      0.031   13.8   9.9         10    5.5   0.1    5.8  6  rOmpB           Rickettsia outer membrane protein B
      0.054   13.7   0.0         10    6.4   0.0    3.4  4  HopJ            HopJ type III effector protein


Domain annotation for each model (and alignments):
>> WD40  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.9   0.2     3e-12   4.2e-09       9      38 .]      15      45 ..       6      45 .. 0.88
   2 !   35.4   0.2   8.8e-12   1.2e-08       8      38 .]      57      88 ..      50      88 .. 0.90
   3 !   34.0   0.1   2.5e-11   3.4e-08       9      38 .]     101     131 ..      94     131 .. 0.90
   4 !   38.7   0.2   7.9e-13   1.1e-09       8      38 .]     143     174 ..     136     174 .. 0.89
   5 !   37.0   0.4   2.9e-12     4e-09       8      38 .]     186     217 ..     180     217 .. 0.93
   6 !   34.6   0.1   1.6e-11   2.3e-08       8      38 .]     229     260 ..     223     260 .. 0.89
   7 !   34.1   0.2   2.2e-11   3.1e-08       8      38 .]     272     303 ..     266     303 .. 0.89

  Alignments for each domain:
  == domain 1  score: 36.9 bits;  conditional E-value: 3e-12
                SSSS.EEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40  9 GHss.vtslafspdgawlasGsdDgtvriWd 38
                +Hs  v+s+afspdg+ ++sGsdDgt+++Wd
  KOO25172.1 15 AHSYvVRSVAFSPDGTKIVSGSDDGTIKVWD 45
                786667************************9 PP

  == domain 2  score: 35.4 bits;  conditional E-value: 8.8e-12
                ESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40  8 tGH.ssvtslafspdgawlasGsdDgtvriWd 38
                 +H +++ s+afspdg+ ++sGs+D+t+++Wd
  KOO25172.1 57 NAHsDWIQSVAFSPDGTKVVSGSYDKTIKVWD 88
                489566*************************9 PP

  == domain 3  score: 34.0 bits;  conditional E-value: 2.5e-11
                 SSSS.EEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40   9 GHss.vtslafspdgawlasGsdDgtvriWd 38 
                 +Hs+ v s+afspdg+ ++sGs D+t+++Wd
  KOO25172.1 101 AHSHfVMSVAFSPDGTKIVSGSADKTIKVWD 131
                 78556*************************9 PP

  == domain 4  score: 38.7 bits;  conditional E-value: 7.9e-13
                 ESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40   8 tGH.ssvtslafspdgawlasGsdDgtvriWd 38 
                  +H ++++s+afspdg+ ++sGsdD+t+++Wd
  KOO25172.1 143 NAHsDCINSVAFSPDGTKIVSGSDDRTIKVWD 174
                 489555*************************9 PP

  == domain 5  score: 37.0 bits;  conditional E-value: 2.9e-12
                 ESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40   8 tGH.ssvtslafspdgawlasGsdDgtvriWd 38 
                  +H ++++s+afspdg+ ++sGsdD t+++Wd
  KOO25172.1 186 NAHsNWIRSVAFSPDGTKIVSGSDDTTIKVWD 217
                 48*888*************************9 PP

  == domain 6  score: 34.6 bits;  conditional E-value: 1.6e-11
                 ESSSS.EEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40   8 tGHss.vtslafspdgawlasGsdDgtvriWd 38 
                  +Hs+ + s+afspdg+ ++sGs+D+t+++Wd
  KOO25172.1 229 NAHSGrIFSVAFSPDGTKIVSGSEDKTIKVWD 260
                 489445*************************9 PP

  == domain 7  score: 34.1 bits;  conditional E-value: 2.2e-11
                 ESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40   8 tGH.ssvtslafspdgawlasGsdDgtvriWd 38 
                  +H  +++s+afsp g+ ++sGsdD+tv++Wd
  KOO25172.1 272 NAHsRDINSVAFSPGGTKIVSGSDDNTVKVWD 303
                 589555*************************9 PP

>> Ge1_WD40  WD40 region of Ge1, enhancer of mRNA-decapping protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.1   0.0   1.2e-05     0.017     185     215 ..      14      45 ..       6      55 .. 0.84
   2 !    9.1   0.0   0.00042      0.58     185     215 ..      57      88 ..      45      99 .. 0.86
   3 !   11.9   0.1   5.6e-05     0.078     184     216 ..      99     132 ..      88     143 .. 0.83
   4 !   10.2   0.0   0.00019      0.26     185     214 ..     143     173 ..     133     179 .. 0.88
   5 !   10.2   0.0   0.00018      0.25     185     215 ..     186     217 ..     174     230 .. 0.83
   6 !   11.0   0.0   0.00011      0.15     185     215 ..     229     260 ..     218     271 .. 0.82
   7 !    8.3   0.0   0.00073         1     185     217 ..     272     305 ..     260     315 .. 0.82

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 1.2e-05
    Ge1_WD40 185 eehs.liveaafspdGtalatasedGevkffq 215
                 + hs  + + afspdGt +   s dG++k + 
  KOO25172.1  14 NAHSyVVRSVAFSPDGTKIVSGSDDGTIKVWD 45 
                 56774566789******************996 PP

  == domain 2  score: 9.1 bits;  conditional E-value: 0.00042
    Ge1_WD40 185 eehs.liveaafspdGtalatasedGevkffq 215
                 + hs  i + afspdGt +   s d ++k + 
  KOO25172.1  57 NAHSdWIQSVAFSPDGTKVVSGSYDKTIKVWD 88 
                 4566579999*******************995 PP

  == domain 3  score: 11.9 bits;  conditional E-value: 5.6e-05
    Ge1_WD40 184 ieehs.liveaafspdGtalatasedGevkffqv 216
                  + hs  +++ afspdGt +   s+d ++k +  
  KOO25172.1  99 TNAHShFVMSVAFSPDGTKIVSGSADKTIKVWDF 132
                 4567657999********************9975 PP

  == domain 4  score: 10.2 bits;  conditional E-value: 0.00019
    Ge1_WD40 185 eehs.liveaafspdGtalatasedGevkff 214
                 + hs +i + afspdGt +   s d ++k +
  KOO25172.1 143 NAHSdCINSVAFSPDGTKIVSGSDDRTIKVW 173
                 56776999*********************98 PP

  == domain 5  score: 10.2 bits;  conditional E-value: 0.00018
    Ge1_WD40 185 eehs.liveaafspdGtalatasedGevkffq 215
                 + hs  i + afspdGt +   s d ++k + 
  KOO25172.1 186 NAHSnWIRSVAFSPDGTKIVSGSDDTTIKVWD 217
                 4565469999*******************996 PP

  == domain 6  score: 11.0 bits;  conditional E-value: 0.00011
    Ge1_WD40 185 eehs.liveaafspdGtalatasedGevkffq 215
                 + hs  i + afspdGt +   sed ++k + 
  KOO25172.1 229 NAHSgRIFSVAFSPDGTKIVSGSEDKTIKVWD 260
                 44555799*********************996 PP

  == domain 7  score: 8.3 bits;  conditional E-value: 0.00073
    Ge1_WD40 185 eehs.liveaafspdGtalatasedGevkffqvy 217
                 + hs  i + afsp Gt +   s d +vk + + 
  KOO25172.1 272 NAHSrDINSVAFSPGGTKIVSGSDDNTVKVWDMV 305
                 566667999*********************9865 PP

>> ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.5   0.0     5e-05     0.069      35      75 ..      14      54 ..       4      62 .. 0.84
   2 !   10.7   0.0   0.00036       0.5      35      88 ..      57     110 ..      49     112 .. 0.84
   3 !    9.4   0.0   0.00095       1.3      35      78 ..     100     143 ..      93     149 .. 0.82
   4 !   12.8   0.1   7.9e-05      0.11      28      76 ..     128     184 ..     125     190 .. 0.85
   5 !    9.8   0.0   0.00067      0.93      34      68 ..     185     219 ..     179     228 .. 0.85
   6 !   11.7   0.1   0.00018      0.25      32      76 ..     218     270 ..     214     276 .. 0.80
   7 !    9.4   0.1   0.00093       1.3      34      70 ..     271     307 ..     265     331 .. 0.76

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 5e-05
  ANAPC4_WD40 35 dkedsevrsLaWkpdgklLavaysdgevrlldaesgkvvhs 75
                 ++++  vrs+a++pdg+ ++ + +dg++++ d  + +++++
   KOO25172.1 14 NAHSYVVRSVAFSPDGTKIVSGSDDGTIKVWDFDKLELLSE 54
                 5667789*************************999888875 PP

  == domain 2  score: 10.7 bits;  conditional E-value: 0.00036
  ANAPC4_WD40  35 dkedsevrsLaWkpdgklLavaysdgevrlldaesgkvvhslsvksekavtclg 88 
                  ++++  ++s+a++pdg+  + +  d ++++ d+ + +++++ + ++++ v+++ 
   KOO25172.1  57 NAHSDWIQSVAFSPDGTKVVSGSYDKTIKVWDSDKLEMLSEKTNAHSHFVMSVA 110
                  5677789*******************************9987776666677665 PP

  == domain 3  score: 9.4 bits;  conditional E-value: 0.00095
  ANAPC4_WD40  35 dkedsevrsLaWkpdgklLavaysdgevrlldaesgkvvhslsv 78 
                  +++++ v s+a++pdg+ ++ + +d ++++ d  + +++++ + 
   KOO25172.1 100 NAHSHFVMSVAFSPDGTKIVSGSADKTIKVWDFAKLELLSEKTN 143
                  56777899************************999998876554 PP

  == domain 4  score: 12.8 bits;  conditional E-value: 7.9e-05
  ANAPC4_WD40  28 rvwtl........eedkedsevrsLaWkpdgklLavaysdgevrlldaesgkvvhsl 76 
                  +vw++        ++++++  ++s+a++pdg+ ++ + +d ++++ d+ + +++++ 
   KOO25172.1 128 KVWDFaklellseKTNAHSDCINSVAFSPDGTKIVSGSDDRTIKVWDSGKLEMLSEK 184
                  67777777777777888999****************************999998765 PP

  == domain 5  score: 9.8 bits;  conditional E-value: 0.00067
  ANAPC4_WD40  34 edkedsevrsLaWkpdgklLavaysdgevrlldae 68 
                  ++++++ +rs+a++pdg+ ++ + +d+++++ d+ 
   KOO25172.1 185 TNAHSNWIRSVAFSPDGTKIVSGSDDTTIKVWDSG 219
                  5677889************************9975 PP

  == domain 6  score: 11.7 bits;  conditional E-value: 0.00018
  ANAPC4_WD40  32 l........eedkedsevrsLaWkpdgklLavaysdgevrlldaesgkvvhsl 76 
                           +++++++++ s+a++pdg+ ++ + +d ++++ d+ + +++++ 
   KOO25172.1 218 SgtmvqlseKTNAHSGRIFSVAFSPDGTKIVSGSEDKTIKVWDSAKLELMSKK 270
                  4445555556788999****************************998887764 PP

  == domain 7  score: 9.4 bits;  conditional E-value: 0.00093
  ANAPC4_WD40  34 edkedsevrsLaWkpdgklLavaysdgevrlldaesg 70 
                  ++++++ ++s+a++p g+ ++ + +d++v++ d+ + 
   KOO25172.1 271 TNAHSRDINSVAFSPGGTKIVSGSDDNTVKVWDMVNW 307
                  6778899************************998764 PP

>> PD40  WD40-like Beta Propeller Repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.5   0.0    0.0028       3.9      15      24 ..      24      33 ..      20      33 .. 0.89
   2 ?    4.9   0.0     0.019        27      15      23 ..      67      75 ..      64      76 .. 0.85
   3 !    8.1   0.0    0.0019       2.6      13      24 ..     108     119 ..     101     119 .. 0.86
   4 !    7.6   0.0    0.0027       3.8      15      24 ..     153     162 ..     149     162 .. 0.88
   5 !    8.7   0.0    0.0012       1.6      10      24 ..     191     205 ..     186     205 .. 0.80
   6 !   11.4   0.0   0.00017      0.23       7      24 ..     231     248 ..     229     248 .. 0.90
   7 ?   -0.6   0.0      0.97   1.3e+03       8      24 ..     275     291 ..     271     291 .. 0.79

  Alignments for each domain:
  == domain 1  score: 7.5 bits;  conditional E-value: 0.0028
                EE-TTSSEEE CS
        PD40 15 sfSPDGkrla 24
                +fSPDG++++
  KOO25172.1 24 AFSPDGTKIV 33
                8*******96 PP

  == domain 2  score: 4.9 bits;  conditional E-value: 0.019
                EE-TTSSEE CS
        PD40 15 sfSPDGkrl 23
                +fSPDG++ 
  KOO25172.1 67 AFSPDGTKV 75
                8*****985 PP

  == domain 3  score: 8.1 bits;  conditional E-value: 0.0019
                 EEEE-TTSSEEE CS
        PD40  13 aPsfSPDGkrla 24 
                 + +fSPDG++++
  KOO25172.1 108 SVAFSPDGTKIV 119
                 569*******96 PP

  == domain 4  score: 7.6 bits;  conditional E-value: 0.0027
                 EE-TTSSEEE CS
        PD40  15 sfSPDGkrla 24 
                 +fSPDG++++
  KOO25172.1 153 AFSPDGTKIV 162
                 8*******96 PP

  == domain 5  score: 8.7 bits;  conditional E-value: 0.0012
                 .EEEEEE-TTSSEEE CS
        PD40  10 negaPsfSPDGkrla 24 
                 ++ + +fSPDG++++
  KOO25172.1 191 WIRSVAFSPDGTKIV 205
                 566779*******96 PP

  == domain 6  score: 11.4 bits;  conditional E-value: 0.00017
                 SSS.EEEEEE-TTSSEEE CS
        PD40   7 tpgnegaPsfSPDGkrla 24 
                 ++g +++ +fSPDG++++
  KOO25172.1 231 HSGRIFSVAFSPDGTKIV 248
                 789999**********96 PP

  == domain 7  score: -0.6 bits;  conditional E-value: 0.97
                 SS.EEEEEE-TTSSEEE CS
        PD40   8 pgnegaPsfSPDGkrla 24 
                 + ++ + +fSP G++++
  KOO25172.1 275 SRDINSVAFSPGGTKIV 291
                 66777889***999986 PP

>> BBS2_Mid  Ciliary BBSome complex subunit 2, middle region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.9   0.0     0.019        26      13      38 ..      30      57 ..      22      69 .. 0.74
   2 ?    4.1   0.0     0.033        46      13      40 ..      73     102 ..      63     110 .. 0.74
   3 ?    3.0   0.0     0.071        98      12      38 ..     115     143 ..     106     155 .. 0.70
   4 ?    5.3   0.0     0.014        19      12      37 ..     158     185 ..     148     194 .. 0.73
   5 !    6.8   0.0    0.0049       6.8      13      39 ..     202     228 ..     192     235 .. 0.80
   6 ?    4.1   0.0     0.033        46      12      33 ..     244     265 ..     235     280 .. 0.76
   7 !    7.4   0.0    0.0032       4.5      11      54 ..     286     335 ..     278     337 .. 0.82

  Alignments for each domain:
  == domain 1  score: 4.9 bits;  conditional E-value: 0.019
    BBS2_Mid 13 neLvvgsddfeirvfkee..elvaeite 38
                +++v gsdd +i+v++ +  el++e t+
  KOO25172.1 30 TKIVSGSDDGTIKVWDFDklELLSEKTN 57
                689***********87662255666554 PP

  == domain 2  score: 4.1 bits;  conditional E-value: 0.033
    BBS2_Mid  13 neLvvgsddfeirvfkee..elvaeitete 40 
                 +++v gs d +i+v++ +  e+++e t+++
  KOO25172.1  73 TKVVSGSYDKTIKVWDSDklEMLSEKTNAH 102
                 57899***********99555666666555 PP

  == domain 3  score: 3.0 bits;  conditional E-value: 0.071
    BBS2_Mid  12 eneLvvgsddfeirv..fkeeelvaeite 38 
                  +++v gs d +i+v  f + el++e t+
  KOO25172.1 115 GTKIVSGSADKTIKVwdFAKLELLSEKTN 143
                 3689**********933445566666554 PP

  == domain 4  score: 5.3 bits;  conditional E-value: 0.014
    BBS2_Mid  12 eneLvvgsddfeirvfkee..elvaeit 37 
                  +++v gsdd +i+v++ +  e+++e t
  KOO25172.1 158 GTKIVSGSDDRTIKVWDSGklEMLSEKT 185
                 3689************998344555544 PP

  == domain 5  score: 6.8 bits;  conditional E-value: 0.0049
    BBS2_Mid  13 neLvvgsddfeirvfkeeelvaeitet 39 
                 +++v gsdd +i+v++ +++v+  ++t
  KOO25172.1 202 TKIVSGSDDTTIKVWDSGTMVQLSEKT 228
                 689***************998755554 PP

  == domain 6  score: 4.1 bits;  conditional E-value: 0.033
    BBS2_Mid  12 eneLvvgsddfeirvfkeeelv 33 
                  +++v gs+d +i+v++  +l 
  KOO25172.1 244 GTKIVSGSEDKTIKVWDSAKLE 265
                 3689***********9987654 PP

  == domain 7  score: 7.4 bits;  conditional E-value: 0.0032
    BBS2_Mid  11 geneLvvgsddfeirvf......keeelvaeitetekvvslarlekerfa 54 
                 g +++v gsdd++++v+      ++++l++++t++  v +l  l+k+r+ 
  KOO25172.1 286 GGTKIVSGSDDNTVKVWdmvnwsRKDHLMFNVTTQRFVLQLLWLNKHRMK 335
                 55789**********98444443578999999999999999999999986 PP

>> Frtz  WD repeat-containing and planar cell polarity effector protein Fritz
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.6   0.0     0.012        16     262     289 ..      20      47 ..       3      62 .. 0.84
   2 !   11.5   0.0   4.9e-05     0.067     262     337 ..      63     137 ..      58     147 .. 0.81
   3 !    7.9   0.0   0.00058       0.8     262     327 ..     149     217 ..     144     232 .. 0.72
   4 !    8.1   0.0    0.0005      0.69     262     327 ..     192     260 ..     176     260 .. 0.80
   5 !   11.1   0.0   6.4e-05     0.088     261     338 ..     234     314 ..     227     336 .. 0.75

  Alignments for each domain:
  == domain 1  score: 3.6 bits;  conditional E-value: 0.012
        Frtz 262 vislafnpdedkLllGceDssviLydee 289
                 v s+af+pd  k++ G+ D+++ ++d +
  KOO25172.1  20 VRSVAFSPDGTKIVSGSDDGTIKVWDFD 47 
                 6799******************999865 PP

  == domain 2  score: 11.5 bits;  conditional E-value: 4.9e-05
        Frtz 262 vislafnpdedkLllGceDssviLydeerkitklvkaevvPsl...iswhpdsaillvasergelqifDlaLspiriql 337
                 + s+af+pd  k++ G+ D+++ ++d+++   +  k++   ++   +++ pd++ ++ +s+   ++++D+a    +  l
  KOO25172.1  63 IQSVAFSPDGTKVVSGSYDKTIKVWDSDKLEMLSEKTNAHSHFvmsVAFSPDGTKIVSGSADKTIKVWDFA----KLEL 137
                 6789**********************997666666777777762226899*******************98....3444 PP

  == domain 3  score: 7.9 bits;  conditional E-value: 0.00058
        Frtz 262 vislafnpdedkLllGceDssviLydeerkitklvkaevvPs...liswhpdsaillvasergelqifD 327
                 + s+af+pd  k++ G+ D ++ ++d+ +   +  k++   +    +++ pd++ ++ +s+ + ++++D
  KOO25172.1 149 INSVAFSPDGTKIVSGSDDRTIKVWDSGKLEMLSEKTNAHSNwirSVAFSPDGTKIVSGSDDTTIKVWD 217
                 567899999999999999999999998765444445555544111456788888888888888888888 PP

  == domain 4  score: 8.1 bits;  conditional E-value: 0.0005
        Frtz 262 vislafnpdedkLllGceDssviLydeerkitklvkaevvPs...liswhpdsaillvasergelqifD 327
                 + s+af+pd  k++ G+ D+++ ++d+ + + +  k++        +++ pd++ ++ +se   ++++D
  KOO25172.1 192 IRSVAFSPDGTKIVSGSDDTTIKVWDSGTMVQLSEKTNAHSGrifSVAFSPDGTKIVSGSEDKTIKVWD 260
                 67899*********************9988777767666554111568889999999999999888887 PP

  == domain 5  score: 11.1 bits;  conditional E-value: 6.4e-05
        Frtz 261 qvislafnpdedkLllGceDssviLydeerk..itklvkaevvP.sliswhpdsaillvasergelqifDlaLspiriqll 338
                 ++ s+af+pd  k++ G+eD+++ ++d+ +   + k ++a+ +  + +++ p ++ ++ +s+   ++++D+   + +  l+
  KOO25172.1 234 RIFSVAFSPDGTKIVSGSEDKTIKVWDSAKLelMSKKTNAHSRDiNSVAFSPGGTKIVSGSDDNTVKVWDMVNWSRKDHLM 314
                 6899***********************86531144444444332267899999*****************97655555555 PP

>> DCX  Doublecortin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.0   0.0     0.039        54      13      43 ..       5      37 ..       2      38 .. 0.80
   2 ?    2.7   0.0       0.1   1.4e+02      14      40 ..      49      77 ..      43      81 .. 0.84
   3 ?    3.8   0.0     0.044        60      14      40 ..      92     120 ..      89     124 .. 0.86
   4 ?    2.3   0.0      0.13   1.8e+02      14      43 ..     135     166 ..     133     167 .. 0.77
   5 !    6.6   0.0    0.0061       8.5      14      43 ..     178     209 ..     175     211 .. 0.88
   6 ?    2.4   0.0      0.13   1.8e+02      16      42 ..     223     251 ..     220     253 .. 0.76
   7 ?   -2.0   0.0       2.9     4e+03      14      42 ..     264     294 ..     261     296 .. 0.62

  Alignments for each domain:
  == domain 1  score: 4.0 bits;  conditional E-value: 0.039
         DCX 13 lLdeltekvklpfg.Vrkly.tldGrkvvssld 43
                l + + ek ++++  Vr +  ++dG+k+vs  d
  KOO25172.1  5 LINCVAEKANAHSYvVRSVAfSPDGTKIVSGSD 37
                777888999997777999966*****9999555 PP

  == domain 2  score: 2.7 bits;  conditional E-value: 0.1
         DCX 14 Ldeltekvklpfg.Vrkly.tldGrkvvs 40
                L+ l+ek ++++  ++ +  ++dG+kvvs
  KOO25172.1 49 LELLSEKTNAHSDwIQSVAfSPDGTKVVS 77
                78899999999899988855*****9998 PP

  == domain 3  score: 3.8 bits;  conditional E-value: 0.044
         DCX  14 Ldeltekvklpfg.Vrkly.tldGrkvvs 40 
                 L++l+ek ++++  V  +  ++dG+k+vs
  KOO25172.1  92 LEMLSEKTNAHSHfVMSVAfSPDGTKIVS 120
                 899****9999999999955*****9998 PP

  == domain 4  score: 2.3 bits;  conditional E-value: 0.13
         DCX  14 Ldeltekvklpfg.Vrkly.tldGrkvvssld 43 
                 L+ l+ek ++++  +  +  ++dG+k+vs  d
  KOO25172.1 135 LELLSEKTNAHSDcINSVAfSPDGTKIVSGSD 166
                 77888888887777877744*****9999555 PP

  == domain 5  score: 6.6 bits;  conditional E-value: 0.0061
         DCX  14 Ldeltekvklpfg.Vrkly.tldGrkvvssld 43 
                 L++l+ek ++++  +r +  ++dG+k+vs  d
  KOO25172.1 178 LEMLSEKTNAHSNwIRSVAfSPDGTKIVSGSD 209
                 899*******9999****66*****9999655 PP

  == domain 6  score: 2.4 bits;  conditional E-value: 0.13
         DCX  16 eltekvklpfg.Vrkl.ytldGrkvvssl 42 
                 +l+ek ++++g +  + +++dG+k+vs  
  KOO25172.1 223 QLSEKTNAHSGrIFSVaFSPDGTKIVSGS 251
                 789998888888666626*****999954 PP

  == domain 7  score: -2.0 bits;  conditional E-value: 2.9
         DCX  14 Ldeltekvklpfg.Vrkl.ytldGrkvvssl 42 
                 L+ +++k ++++  +  + +++ G+k+vs  
  KOO25172.1 264 LELMSKKTNAHSRdINSVaFSPGGTKIVSGS 294
                 5666666666544455552588888888854 PP

>> WD40_like  WD40-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.9   0.0    0.0052       7.1       5      65 ..      22      84 ..      19     105 .. 0.73
   2 !    5.9   0.0     0.005       6.8       3      54 ..     106     158 ..     104     186 .. 0.74
   3 ?    0.1   0.0      0.28   3.9e+02       3      32 ..     192     221 ..     190     231 .. 0.80
   4 ?    4.3   0.0     0.015        21       3      36 ..     235     268 ..     233     275 .. 0.88
   5 ?    0.2   0.0      0.28   3.8e+02       2      31 ..     277     306 ..     276     313 .. 0.88

  Alignments for each domain:
  == domain 1  score: 5.9 bits;  conditional E-value: 0.0052
   WD40_like  5 sidiskkgslilyGgkddkctvlkleslesvsives.fedSvifvkllddd.lilvvtlDGti 65
                s+ +s++g+ i+ G++d +++v +++ le+ s  ++  +d ++ v +  d  +++ ++ D ti
  KOO25172.1 22 SVAFSPDGTKIVSGSDDGTIKVWDFDKLELLSEKTNaHSDWIQSVAFSPDGtKVVSGSYDKTI 84
                89999**********************999886554256666666665444255556666666 PP

  == domain 2  score: 5.9 bits;  conditional E-value: 0.005
   WD40_like   3 iYsidiskkgslilyGgkddkctvlkleslesvsives.fedSvifvkllddd 54 
                 + s+ +s++g+ i+ G+ d++++v ++  le+ s  ++  +d +  v +  d 
  KOO25172.1 106 VMSVAFSPDGTKIVSGSADKTIKVWDFAKLELLSEKTNaHSDCINSVAFSPDG 158
                 568999**********************9999886654156666666665544 PP

  == domain 3  score: 0.1 bits;  conditional E-value: 0.28
   WD40_like   3 iYsidiskkgslilyGgkddkctvlklesl 32 
                 i s+ +s++g+ i+ G++d +++v +  + 
  KOO25172.1 192 IRSVAFSPDGTKIVSGSDDTTIKVWDSGTM 221
                 568999***********9999999875554 PP

  == domain 4  score: 4.3 bits;  conditional E-value: 0.015
   WD40_like   3 iYsidiskkgslilyGgkddkctvlkleslesvs 36 
                 i+s+ +s++g+ i+ G++d++++v +   le++s
  KOO25172.1 235 IFSVAFSPDGTKIVSGSEDKTIKVWDSAKLELMS 268
                 99**********************9988887766 PP

  == domain 5  score: 0.2 bits;  conditional E-value: 0.28
   WD40_like   2 eiYsidiskkgslilyGgkddkctvlkles 31 
                 +i s+ +s+ g+ i+ G++d++++v ++ +
  KOO25172.1 277 DINSVAFSPGGTKIVSGSDDNTVKVWDMVN 306
                 578999******************999865 PP

>> Plk4_PB1  Polo-like Kinase 4 Polo Box 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.6   0.0      0.22   3.1e+02      33      57 ..       8      33 ..       3      43 .. 0.83
   2 ?    2.7   0.0     0.097   1.3e+02      31      71 ..      49      90 ..      40     103 .. 0.75
   3 ?    2.7   0.0       0.1   1.4e+02      30      61 ..      91     123 ..      79     131 .. 0.77
   4 ?    4.7   0.0     0.023        32      31      57 ..     135     162 ..     126     174 .. 0.85
   5 ?    3.5   0.0     0.059        81      21      62 ..     170     210 ..     165     242 .. 0.75
   6 ?    0.2   0.0       0.6   8.3e+02      21      64 ..     213     255 ..     208     277 .. 0.61
   7 ?   -0.6   0.0         1   1.4e+03      30      58 ..     263     292 ..     245     319 .. 0.72

  Alignments for each domain:
  == domain 1  score: 1.6 bits;  conditional E-value: 0.22
    Plk4_PB1 33 llkkk.ngeekvvevlriSsdGqeii 57
                 + +k n + +vv  +  S dG++i+
  KOO25172.1  8 CVAEKaNAHSYVVRSVAFSPDGTKIV 33
                55666588999*************97 PP

  == domain 2  score: 2.7 bits;  conditional E-value: 0.097
    Plk4_PB1 31 lellkkk.ngeekvvevlriSsdGqeiiiyqpesgkevplnd 71
                lell +k n +   ++ +  S dG++++    +++ +v  +d
  KOO25172.1 49 LELLSEKtNAHSDWIQSVAFSPDGTKVVSGSYDKTIKVWDSD 90
                7899999666778889999********987777776665444 PP

  == domain 3  score: 2.7 bits;  conditional E-value: 0.1
    Plk4_PB1  30 clellkkk.ngeekvvevlriSsdGqeiiiyqp 61 
                  le+l +k n + + v  +  S dG++i+   +
  KOO25172.1  91 KLEMLSEKtNAHSHFVMSVAFSPDGTKIVSGSA 123
                 58999999777888999999*******986555 PP

  == domain 4  score: 4.7 bits;  conditional E-value: 0.023
    Plk4_PB1  31 lellkkk.ngeekvvevlriSsdGqeii 57 
                 lell +k n +  +++ +  S dG++i+
  KOO25172.1 135 LELLSEKtNAHSDCINSVAFSPDGTKIV 162
                 8999999788899*************98 PP

  == domain 5  score: 3.5 bits;  conditional E-value: 0.059
    Plk4_PB1  21 vsilesgeVclellkkk.ngeekvvevlriSsdGqeiiiyqpe 62 
                 +++ +sg   le+l +k n + + +  +  S dG++i+    +
  KOO25172.1 170 IKVWDSG--KLEMLSEKtNAHSNWIRSVAFSPDGTKIVSGSDD 210
                 5555666..5899999977788999999********9865544 PP

  == domain 6  score: 0.2 bits;  conditional E-value: 0.6
    Plk4_PB1  21 vsilesgeVclellkkkngeekvvevlriSsdGqeiiiyqpesg 64 
                 +++ +sg  +++l +k n +   +  +  S dG++i+    +++
  KOO25172.1 213 IKVWDSG-TMVQLSEKTNAHSGRIFSVAFSPDGTKIVSGSEDKT 255
                 5666666.455666655444444445678999999986555554 PP

  == domain 7  score: -0.6 bits;  conditional E-value: 1
    Plk4_PB1  30 clellkkk.ngeekvvevlriSsdGqeiii 58 
                  lel+ kk n + + ++ +  S  G++i+ 
  KOO25172.1 263 KLELMSKKtNAHSRDINSVAFSPGGTKIVS 292
                 578888885555666777788888888875 PP

>> WD40_3  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.0   0.0      0.31   4.3e+02       6      23 ..      16      33 ..      15      43 .. 0.88
   2 ?    1.5   0.0      0.21   2.9e+02       6      23 ..      59      76 ..      57      78 .. 0.93
   3 ?   -0.6   0.0      0.98   1.4e+03       6      23 ..     102     119 ..     101     126 .. 0.90
   4 ?    2.4   0.0      0.11   1.5e+02       6      23 ..     145     162 ..     143     170 .. 0.92
   5 ?    2.3   0.0      0.12   1.7e+02       6      23 ..     188     205 ..     186     215 .. 0.91
   6 ?    0.1   0.0      0.62   8.6e+02       6      23 ..     231     248 ..     229     267 .. 0.83
   7 ?   -0.1   0.0      0.68   9.3e+02       6      24 ..     274     292 ..     272     308 .. 0.82

  Alignments for each domain:
  == domain 1  score: 1.0 bits;  conditional E-value: 0.31
      WD40_3  6 HsvgIkklfpnpsGtrlv 23
                Hs  ++++   p+Gt++v
  KOO25172.1 16 HSYVVRSVAFSPDGTKIV 33
                9999************98 PP

  == domain 2  score: 1.5 bits;  conditional E-value: 0.21
      WD40_3  6 HsvgIkklfpnpsGtrlv 23
                Hs+ I ++   p+Gt++v
  KOO25172.1 59 HSDWIQSVAFSPDGTKVV 76
                9999************98 PP

  == domain 3  score: -0.6 bits;  conditional E-value: 0.98
      WD40_3   6 HsvgIkklfpnpsGtrlv 23 
                 Hs+ + ++   p+Gt++v
  KOO25172.1 102 HSHFVMSVAFSPDGTKIV 119
                 89999999*******998 PP

  == domain 4  score: 2.4 bits;  conditional E-value: 0.11
      WD40_3   6 HsvgIkklfpnpsGtrlv 23 
                 Hs+ I ++   p+Gt++v
  KOO25172.1 145 HSDCINSVAFSPDGTKIV 162
                 9***************98 PP

  == domain 5  score: 2.3 bits;  conditional E-value: 0.12
      WD40_3   6 HsvgIkklfpnpsGtrlv 23 
                 Hs+ I+++   p+Gt++v
  KOO25172.1 188 HSNWIRSVAFSPDGTKIV 205
                 9999************98 PP

  == domain 6  score: 0.1 bits;  conditional E-value: 0.62
      WD40_3   6 HsvgIkklfpnpsGtrlv 23 
                 Hs  I ++   p+Gt++v
  KOO25172.1 231 HSGRIFSVAFSPDGTKIV 248
                 88889999*******998 PP

  == domain 7  score: -0.1 bits;  conditional E-value: 0.68
      WD40_3   6 HsvgIkklfpnpsGtrlvf 24 
                 Hs  I ++   p Gt++v 
  KOO25172.1 274 HSRDINSVAFSPGGTKIVS 292
                 899999**********996 PP

>> dsrm  Double-stranded RNA binding motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.0       4.8   6.6e+03      21      49 ..      52      80 ..      49      85 .. 0.71
   2 ?    5.0   0.0     0.029        40      20      50 ..      94     124 ..      91     129 .. 0.80
   3 ?   -1.6   0.0       3.5   4.8e+03      20      48 ..     137     165 ..     134     171 .. 0.77
   4 ?   -0.4   0.0       1.4   1.9e+03      21      49 ..     181     209 ..     177     215 .. 0.76
   5 !    8.3   0.1    0.0027       3.7      21      49 ..     224     252 ..     220     275 .. 0.86
   6 ?   -1.4   0.0         3   4.1e+03      21      50 ..     267     296 ..     262     300 .. 0.79

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 4.8
                EEEESSTSSSEEEEEEEEETTEEEEEEEE CS
        dsrm 21 vseegpphslpkFvvtvkvngklygsGvg 49
                 se++++hs  + +v +  +g+++ sG++
  KOO25172.1 52 LSEKTNAHSDWIQSVAFSPDGTKVVSGSY 80
                68889999855666666669999888876 PP

  == domain 2  score: 5.0 bits;  conditional E-value: 0.029
                 EEEEESSTSSSEEEEEEEEE..TTEEEEEEEES CS
        dsrm  20 yvseegpphslpkFvvtvkv..ngklygsGvgs 50 
                   se++++hs   Fv++v +  +g+++ sG++ 
  KOO25172.1  94 MLSEKTNAHS--HFVMSVAFspDGTKIVSGSAD 124
                 57899****9..8888888888*****999875 PP

  == domain 3  score: -1.6 bits;  conditional E-value: 3.5
                 EEEEESSTSSSEEEEEEEEETTEEEEEEE CS
        dsrm  20 yvseegpphslpkFvvtvkvngklygsGv 48 
                   se++++hs  + +v +  +g+++ sG+
  KOO25172.1 137 LLSEKTNAHSDCINSVAFSPDGTKIVSGS 165
                 57888999996688888888999998886 PP

  == domain 4  score: -0.4 bits;  conditional E-value: 1.4
                 EEEESSTSSSEEEEEEEEETTEEEEEEEE CS
        dsrm  21 vseegpphslpkFvvtvkvngklygsGvg 49 
                  se++++hs+ + +v +  +g+++ sG+ 
  KOO25172.1 181 LSEKTNAHSNWIRSVAFSPDGTKIVSGSD 209
                 78999999955777777779999999976 PP

  == domain 5  score: 8.3 bits;  conditional E-value: 0.0027
                 EEEESSTSSSEEEEEEEEETTEEEEEEEE CS
        dsrm  21 vseegpphslpkFvvtvkvngklygsGvg 49 
                  se++++hs ++F+v +  +g+++ sG+ 
  KOO25172.1 224 LSEKTNAHSGRIFSVAFSPDGTKIVSGSE 252
                 6899********************99987 PP

  == domain 6  score: -1.4 bits;  conditional E-value: 3
                 EEEESSTSSSEEEEEEEEETTEEEEEEEES CS
        dsrm  21 vseegpphslpkFvvtvkvngklygsGvgs 50 
                  s+++++hs+ + +v +  +g+++ sG+  
  KOO25172.1 267 MSKKTNAHSRDINSVAFSPGGTKIVSGSDD 296
                 678899999669999999999999999865 PP

>> rOmpB  Rickettsia outer membrane protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.4   0.0     0.032        44      21      53 ..       7      39 ..       2      56 .. 0.78
   2 ?    1.1   0.0      0.17   2.4e+02      33      50 ..     105     122 ..      92     128 .. 0.82
   3 ?    1.2   0.0      0.16   2.2e+02      29      50 ..     144     165 ..     122     169 .. 0.78
   4 ?    0.7   0.0      0.22     3e+02      33      50 ..     191     208 ..     176     229 .. 0.81
   5 ?    0.6   0.1      0.24   3.3e+02      31      50 ..     232     251 ..     208     258 .. 0.77
   6 ?    5.5   0.1    0.0075        10      26      50 ..     270     294 ..     250     300 .. 0.79

  Alignments for each domain:
  == domain 1  score: 3.4 bits;  conditional E-value: 0.032
       rOmpB 21 nlyatnitttdanvgslvfraggtsivsgtvgg 53
                n  a++  +    v s+ f   gt+ivsg+  g
  KOO25172.1  7 NCVAEKANAHSYVVRSVAFSPDGTKIVSGSDDG 39
                555666666666789999999********8665 PP

  == domain 2  score: 1.1 bits;  conditional E-value: 0.17
       rOmpB  33 nvgslvfraggtsivsgt 50 
                  v s+ f   gt+ivsg+
  KOO25172.1 105 FVMSVAFSPDGTKIVSGS 122
                 58899***********97 PP

  == domain 3  score: 1.2 bits;  conditional E-value: 0.16
       rOmpB  29 ttdanvgslvfraggtsivsgt 50 
                 +    + s+ f   gt+ivsg+
  KOO25172.1 144 AHSDCINSVAFSPDGTKIVSGS 165
                 445568999***********96 PP

  == domain 4  score: 0.7 bits;  conditional E-value: 0.22
       rOmpB  33 nvgslvfraggtsivsgt 50 
                  + s+ f   gt+ivsg+
  KOO25172.1 191 WIRSVAFSPDGTKIVSGS 208
                 478999**********96 PP

  == domain 5  score: 0.6 bits;  conditional E-value: 0.24
       rOmpB  31 danvgslvfraggtsivsgt 50 
                    + s+ f   gt+ivsg+
  KOO25172.1 232 SGRIFSVAFSPDGTKIVSGS 251
                 45677999**********96 PP

  == domain 6  score: 5.5 bits;  conditional E-value: 0.0075
       rOmpB  26 nitttdanvgslvfraggtsivsgt 50 
                 +  +   ++ s+ f  ggt+ivsg+
  KOO25172.1 270 KTNAHSRDINSVAFSPGGTKIVSGS 294
                 4445566788*************96 PP

>> HopJ  HopJ type III effector protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.4   0.0    0.0072        10      26      66 ..      16      56 ..       7      76 .. 0.81
   2 ?    2.7   0.0       0.1   1.4e+02      32      66 ..     108     142 ..      89     160 .. 0.82
   3 ?   -1.8   0.0       2.7   3.7e+03      34      66 ..     153     185 ..     148     204 .. 0.67
   4 ?   -1.3   0.0       1.8   2.5e+03      43      56 ..     225     238 ..     188     247 .. 0.58

  Alignments for each domain:
  == domain 1  score: 6.4 bits;  conditional E-value: 0.0072
                HHEEE----EEETTEEE-TTSSHHHHHHHHHHHHTT--HHH CS
        HopJ 26 eaYeftptaFkNgeleneagenegsckifafakleelskee 66
                + Y  + +aF+   ++   g+++g+ k++ f kle ls+++
  KOO25172.1 16 HSYVVRSVAFSPDGTKIVSGSDDGTIKVWDFDKLELLSEKT 56
                568899999*99999999*******************9876 PP

  == domain 2  score: 2.7 bits;  conditional E-value: 0.1
                 ---EEETTEEE-TTSSHHHHHHHHHHHHTT--HHH CS
        HopJ  32 ptaFkNgeleneagenegsckifafakleelskee 66 
                  +aF+   ++   g+ + + k++ fakle ls+++
  KOO25172.1 108 SVAFSPDGTKIVSGSADKTIKVWDFAKLELLSEKT 142
                 5678877788888999999**********999875 PP

  == domain 3  score: -1.8 bits;  conditional E-value: 2.7
                 -EEETTEEE-TTSSHHHHHHHHHHHHTT--HHH CS
        HopJ  34 aFkNgeleneagenegsckifafakleelskee 66 
                 aF+   ++   g+++ + k++  +kle ls+++
  KOO25172.1 153 AFSPDGTKIVSGSDDRTIKVWDSGKLEMLSEKT 185
                 555556666677888888999999999998875 PP

  == domain 4  score: -1.3 bits;  conditional E-value: 1.8
                 -TTSSHHHHHHHHH CS
        HopJ  43 eagenegsckifaf 56 
                 ++ +n  s +if+ 
  KOO25172.1 225 SEKTNAHSGRIFSV 238
                 33445555555554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (352 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       341  (0.0190195); expected 358.6 (0.02)
Passed bias filter:                      251  (0.0139997); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                        14  (0.000780858); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 0.63u 0.29s 00:00:00.92 Elapsed: 00:00:00.46
# Mc/sec: 2284.04
//
Query:       KOO25173.1  [L=282]
Description: RNA group 1 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    6.7e-19   68.5   0.1      4e-18   66.0   0.0    2.0  2  SpoU_methylase  SpoU rRNA Methylase family


Domain annotation for each model (and alignments):
>> SpoU_methylase  SpoU rRNA Methylase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.0   0.0   2.2e-22     4e-18      33     142 .]       4     124 ..       1     124 [. 0.82
   2 ?    0.2   0.1     0.042   7.6e+02      33      73 ..     154     192 ..     137     230 .. 0.53

  Alignments for each domain:
  == domain 1  score: 66.0 bits;  conditional E-value: 2.2e-22
                     ESGSSCTCGSHHHHHHCTTHHHHHH.EEEESSHHHHHHHHCCCTEEEEEEST.T-SEGC...CSHHH...........TTEEEEEEBTTTBS-HH CS
  SpoU_methylase  33 vkprsadllnpeakraaagalevle.lkvvdsleealkelkeegfalvatsl.kgksls...eidlk...........ekvalvfGnEdkGlsne 111
                     v+p + d  ++ea+  a+ga+ +l+ +++++s+++a ++l+ + +a++a+ + +  +++   e   +           e+v l+fG+E++Glsn+
      KOO25173.1   4 VEPIA-DEKSDEAILRASGAAPILKrAETFGSMADATADLQLV-LATTARPReSRIPVHsprE---AvsiaaaaisrgERVGLLFGSEKNGLSND 93 
                     55554.456677777789*******9*****************.8888887754556664442...223346677789***************** PP

                     HHCTSSEEEE----TTSSS--HHHHHHHHHH CS
  SpoU_methylase 112 lleladrlvkIpmsgeveSLNvavAvailly 142
                     +l+ a+ +v+Ip+ + ++SLN+a+Av +++y
      KOO25173.1  94 ELTYAHGIVTIPTFPGFSSLNLAQAVLLICY 124
                     *****************************98 PP

  == domain 2  score: 0.2 bits;  conditional E-value: 0.042
                     ESGSSCTCGSHHHHHHCTTHHHHHHEEEESSHHHHHHHHCC CS
  SpoU_methylase  33 vkprsadllnpeakraaagalevlelkvvdsleealkelke 73 
                      +p + d+    a++a a++ +v  ++  +++++++++++ 
      KOO25173.1 154 QQPTQLDVARAAAQAAEAEQSNV--AAPLKQIDSLFEWWEA 192
                     33344333333333333333333..3334444444444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (282 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       618  (0.0344693); expected 358.6 (0.02)
Passed bias filter:                      304  (0.0169558); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.23s 00:00:00.67 Elapsed: 00:00:00.40
# Mc/sec: 2114.37
//
Query:       KOO25174.1  [L=814]
Description: hypothetical protein Ctob_001753 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    8.4e-39  128.2   2.9    1.4e-07   30.5   0.3    8.3  8  EF-hand_1     EF hand
    3.3e-36  120.1   8.5    3.3e-07   29.7   0.2    8.0  7  EF-hand_6     EF-hand domain
      4e-35  119.7   1.9    5.9e-10   39.5   0.0    3.8  4  Ank_4         Ankyrin repeats (many copies)
    9.3e-31  106.1   0.0    3.2e-07   30.7   0.1    5.4  5  EF-hand_7     EF-hand domain pair
    1.6e-25   89.5   0.0    2.2e-13   50.6   0.0    3.0  2  Ank_2         Ankyrin repeats (3 copies)
    2.7e-22   78.1   3.9    0.00011   22.4   0.0    5.2  5  Ank           Ankyrin repeat
    3.6e-22   76.8   8.5    1.2e-06   27.7   0.4    7.3  7  EF-hand_5     EF hand
    1.7e-19   67.8   2.0      0.001   19.3   0.0    5.8  5  Ank_3         Ankyrin repeat
    3.2e-19   68.5   1.5    0.00049   19.9   0.0    6.2  6  EF-hand_8     EF-hand domain pair
      2e-18   66.2   1.8    3.4e-06   27.2   0.0    4.6  4  Ank_5         Ankyrin repeats (many copies)
     0.0014   18.9   0.1         12    6.3   0.0    4.3  4  EF-hand_9     EF-hand domain
  ------ inclusion threshold ------
      0.011   16.0   1.5         10    6.4   0.5    3.7  4  Dockerin_1    Dockerin type I domain
      0.012   15.9   0.0         29    5.0   0.0    3.5  3  SPARC_Ca_bdg  Secreted protein acidic and rich in cysteine Ca
       0.02   14.8   0.0         21    5.0   0.0    3.7  4  Caleosin      Caleosin related protein
      0.079   13.6   0.3         21    5.8   0.0    3.1  2  PIG-L         GlcNAc-PI de-N-acetylase


Domain annotation for each model (and alignments):
>> EF-hand_1  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.5   0.3   1.2e-10   1.4e-07       2      27 ..     178     203 ..     177     203 .. 0.95
   2 ?    4.7   0.0     0.021        25      13      28 ..     226     241 ..     226     242 .. 0.88
   3 !   19.4   0.0   4.2e-07   0.00051       2      28 ..     263     289 ..     262     290 .. 0.91
   4 !   13.5   0.0   3.3e-05     0.039       5      28 ..     302     325 ..     298     326 .. 0.88
   5 !   26.1   0.0   3.2e-09   3.8e-06       1      28 [.     340     367 ..     340     368 .. 0.94
   6 !   12.7   0.1   5.8e-05      0.07       5      27 ..     380     402 ..     377     404 .. 0.89
   7 !   12.7   0.0     6e-05     0.071       1      28 [.     462     489 ..     462     490 .. 0.88
   8 ?   -2.4   0.0         4   4.7e+03      17      28 ..     515     526 ..     511     527 .. 0.76

  Alignments for each domain:
  == domain 1  score: 30.5 bits;  conditional E-value: 1.2e-10
                 HHHHHHHHTTTSSSEEEHHHHHHHHH CS
   EF-hand_1   2 lkeiFrefDkDgdGkIdfeEfkellk 27 
                 +k++F+ fDk+gdG Id +E++e+lk
  KOO25174.1 178 VKKAFETFDKNGDGSIDADELREALK 203
                 89*********************997 PP

  == domain 2  score: 4.7 bits;  conditional E-value: 0.021
                 SSSEEEHHHHHHHHHH CS
   EF-hand_1  13 gdGkIdfeEfkellkk 28 
                 +dGk+d+ Ef +l+++
  KOO25174.1 226 RDGKLDLGEFARLVQD 241
                 6**********99876 PP

  == domain 3  score: 19.4 bits;  conditional E-value: 4.2e-07
                 HHHHHHHHTTTSSSEEEHHHHHHHHHH CS
   EF-hand_1   2 lkeiFrefDkDgdGkIdfeEfkellkk 28 
                 ++ +F+ fD+Dg+G++d  E k++l++
  KOO25174.1 263 VRVAFSRFDVDGNGRLDAVEIKQALAT 289
                 6789********************987 PP

  == domain 4  score: 13.5 bits;  conditional E-value: 3.3e-05
                 HHHHHTTTSSSEEEHHHHHHHHHH CS
   EF-hand_1   5 iFrefDkDgdGkIdfeEfkellkk 28 
                 + +++D+D++G +++ Ef +l+++
  KOO25174.1 302 VLQKYDTDRSGGVELAEFAQLVND 325
                 789****************99875 PP

  == domain 5  score: 26.1 bits;  conditional E-value: 3.2e-09
                 HHHHHHHHHTTTSSSEEEHHHHHHHHHH CS
   EF-hand_1   1 elkeiFrefDkDgdGkIdfeEfkellkk 28 
                 e++++F++fD Dg+G+Id  E++++l +
  KOO25174.1 340 EVRKAFAHFDSDGNGRIDAFELRTALHH 367
                 799**********************987 PP

  == domain 6  score: 12.7 bits;  conditional E-value: 5.8e-05
                 HHHHHTTTSSSEEEHHHHHHHHH CS
   EF-hand_1   5 iFrefDkDgdGkIdfeEfkellk 27 
                 + +++D+D++  +d++Ef +l++
  KOO25174.1 380 VLKKYDVDRSRELDIDEFAKLVM 402
                 679****************9987 PP

  == domain 7  score: 12.7 bits;  conditional E-value: 6e-05
                 HHHHHHHHHTTTSSSEEEHHHHHHHHHH CS
   EF-hand_1   1 elkeiFrefDkDgdGkIdfeEfkellkk 28 
                 el+ +F+ fD  g+G Id + +  +l++
  KOO25174.1 462 ELRAAFATFDPEGSGAIDAKALGGALAR 489
                 799***************9988877765 PP

  == domain 8  score: -2.4 bits;  conditional E-value: 4
                 EEHHHHHHHHHH CS
   EF-hand_1  17 IdfeEfkellkk 28 
                 + ++Ef++l+++
  KOO25174.1 515 VGLSEFRALVAD 526
                 6789***99875 PP

>> EF-hand_6  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.7   0.2   2.7e-10   3.3e-07       2      31 .]     178     206 ..     177     206 .. 0.93
   2 ?    5.7   0.1     0.013        16       3      27 ..     215     240 ..     214     250 .. 0.84
   3 !   22.3   0.0   6.5e-08   7.7e-05       2      31 .]     263     291 ..     262     293 .. 0.90
   4 !    8.9   0.0    0.0013       1.5       5      27 ..     302     324 ..     298     332 .. 0.86
   5 !   26.8   0.0   2.3e-09   2.8e-06       1      31 []     340     369 ..     340     371 .. 0.92
   6 !   10.2   0.1    0.0005      0.59       5      26 ..     380     401 ..     376     410 .. 0.87
   7 !   13.2   0.0   5.3e-05     0.064       1      27 [.     462     488 ..     462     491 .. 0.89

  Alignments for each domain:
  == domain 1  score: 29.7 bits;  conditional E-value: 2.7e-10
   EF-hand_6   2 lreaFklfDkdgdGkidaeElrkalrkalg 31 
                 +++aF+ fDk+gdG+ida+Elr al+  lg
  KOO25174.1 178 VKKAFETFDKNGDGSIDADELREALK-YLG 206
                 689**********************9.776 PP

  == domain 2  score: 5.7 bits;  conditional E-value: 0.013
   EF-hand_6   3 reaFklfDkd.gdGkidaeElrkalr 27 
                 re+ + +D+  +dGk+d  E+ ++ +
  KOO25174.1 215 REVLERYDTGfRDGKLDLGEFARLVQ 240
                 56778899999**********99877 PP

  == domain 3  score: 22.3 bits;  conditional E-value: 6.5e-08
   EF-hand_6   2 lreaFklfDkdgdGkidaeElrkalrkalg 31 
                 +r aF  fD+dg+G +da E+++al   lg
  KOO25174.1 263 VRVAFSRFDVDGNGRLDAVEIKQALA-TLG 291
                 688**********************8.455 PP

  == domain 4  score: 8.9 bits;  conditional E-value: 0.0013
   EF-hand_6   5 aFklfDkdgdGkidaeElrkalr 27 
                 + +++D+d++G +  +E+ ++ +
  KOO25174.1 302 VLQKYDTDRSGGVELAEFAQLVN 324
                 6689**************99876 PP

  == domain 5  score: 26.8 bits;  conditional E-value: 2.3e-09
   EF-hand_6   1 elreaFklfDkdgdGkidaeElrkalrkalg 31 
                 e+r+aF +fD dg+G ida Elr al   lg
  KOO25174.1 340 EVRKAFAHFDSDGNGRIDAFELRTALH-HLG 369
                 679***********************9.565 PP

  == domain 6  score: 10.2 bits;  conditional E-value: 0.0005
   EF-hand_6   5 aFklfDkdgdGkidaeElrkal 26 
                 + k++D+d++ ++d++E+ k+ 
  KOO25174.1 380 VLKKYDVDRSRELDIDEFAKLV 401
                 6799**************9865 PP

  == domain 7  score: 13.2 bits;  conditional E-value: 5.3e-05
   EF-hand_6   1 elreaFklfDkdgdGkidaeElrkalr 27 
                 elr+aF  fD +g+G ida+ l  al 
  KOO25174.1 462 ELRAAFATFDPEGSGAIDAKALGGALA 488
                 79******************9999887 PP

>> Ank_4  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.0   0.0     4e-09   4.8e-06       5      55 .]     655     704 ..     651     704 .. 0.92
   2 !   36.6   0.1     4e-12   4.7e-09       3      55 .]     686     737 ..     685     737 .. 0.94
   3 !   38.7   0.1   8.4e-13     1e-09       3      55 .]     719     771 ..     717     771 .. 0.97
   4 !   39.5   0.0   4.9e-13   5.9e-10       2      49 ..     752     798 ..     751     799 .. 0.96

  Alignments for each domain:
  == domain 1  score: 27.0 bits;  conditional E-value: 4e-09
       Ank_4   5 LhyaaisgrlelvrlLlekgadinaqdnrsGetalhiAakrgnveilklLl 55 
                 L  a+ sg l  vr+Ll  ga ++ +   +G+++lh+Aa  g+ e+++ L+
  KOO25174.1 655 LIEACTSGELAQVRRLLGEGAPVDGR-GYDGWSPLHRAAAYGHEEAVEALI 704
                 556777********************.**********************98 PP

  == domain 2  score: 36.6 bits;  conditional E-value: 4e-12
       Ank_4   3 taLhyaaisgrlelvrlLlekgadinaqdnrsGetalhiAakrgnveilklLl 55 
                 ++Lh+aa++g++e+v+ L+  ga++   +++ G++alh A+  g++ +++lLl
  KOO25174.1 686 SPLHRAAAYGHEEAVEALIHAGASLPLKTPD-GFSALHWACEYGHPGVVRLLL 737
                 79*****************99***8887688.*******************98 PP

  == domain 3  score: 38.7 bits;  conditional E-value: 8.4e-13
       Ank_4   3 taLhyaaisgrlelvrlLlekgadinaqdnrsGetalhiAakrgnveilklLl 55 
                 +aLh+a+++g+  +vrlLl  +a +  ++++  +t+lh+Aa+ g++ ++klLl
  KOO25174.1 719 SALHWACEYGHPGVVRLLLKARAPVADVSDETLWTPLHRAALDGHLAVVKLLL 771
                 68**************************9***********************8 PP

  == domain 4  score: 39.5 bits;  conditional E-value: 4.9e-13
       Ank_4   2 ltaLhyaaisgrlelvrlLlekgadinaqdnrsGetalhiAakrgnve 49 
                 +t+Lh+aa +g+l +v+lLl+ ga +  + +r+G+t+lh Aa++g++ 
  KOO25174.1 752 WTPLHRAALDGHLAVVKLLLSEGAPVAVR-DREGDTPLHDAARNGHLA 798
                 69***************************.***************975 PP

>> EF-hand_7  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.0   0.2   8.9e-10   1.1e-06       2      70 ..     176     239 ..     175     242 .. 0.93
   2 !   30.2   0.0   3.9e-10   4.7e-07       2      70 ..     261     323 ..     260     324 .. 0.89
   3 !   30.7   0.1   2.7e-10   3.2e-07       4      70 ..     341     401 ..     339     402 .. 0.93
   4 !    8.3   0.0    0.0027       3.2       2      69 ..     461     523 ..     460     525 .. 0.77
   5 ?   -0.1   0.0       1.1   1.3e+03      18      53 ..     554     586 ..     551     593 .. 0.75

  Alignments for each domain:
  == domain 1  score: 29.0 bits;  conditional E-value: 8.9e-10
   EF-hand_7   2 eklkeaFkelDtdgdgyldkeellrllrkifqgagegsklsdeelellfkefDtdk.dGvisfdEFlkly 70 
                 +k+k aF+ +D++gdg++d +el+++l+        g + s  + +++++  Dt   dG++++ EF +l+
  KOO25174.1 176 PKVKKAFETFDKNGDGSIDADELREALK------YLGLNASAAQTREVLERYDTGFrDGKLDLGEFARLV 239
                 68999***********************......9999999999**********8659********9887 PP

  == domain 2  score: 30.2 bits;  conditional E-value: 3.9e-10
   EF-hand_7   2 eklkeaFkelDtdgdgyldkeellrllrkifqgagegsklsdeelellfkefDtdkdGvisfdEFlkly 70 
                 e+++ aF  +D+dg+g+ld  e++++l         g + s+ e  +++++ Dtd++G + + EF +l+
  KOO25174.1 261 ERVRVAFSRFDVDGNGRLDAVEIKQALA------TLGMVASSSEAVAVLQKYDTDRSGGVELAEFAQLV 323
                 678889*********************9......666666777899999****************9985 PP

  == domain 3  score: 30.7 bits;  conditional E-value: 2.7e-10
   EF-hand_7   4 lkeaFkelDtdgdgyldkeellrllrkifqgagegsklsdeelellfkefDtdkdGvisfdEFlkly 70 
                 ++ aF  +D+dg+g++d  el+ +l+      + g++ s+ +  +++k+ D d++++++ dEF kl+
  KOO25174.1 341 VRKAFAHFDSDGNGRIDAFELRTALH------HLGVEASSAQALAVLKKYDVDRSRELDIDEFAKLV 401
                 5789******************9999......89999999999********************9986 PP

  == domain 4  score: 8.3 bits;  conditional E-value: 0.0027
   EF-hand_7   2 eklkeaFkelDtdgdgyldkeellrllrkifqgagegsklsdeelellfkef.DtdkdGvisfdEFlkl 69 
                 e+l+ aF  +D  g+g +d   l  +l       + g+++  e+ e+++      +++  + ++EF++l
  KOO25174.1 461 EELRAAFATFDPEGSGAIDAKALGGALA------RLGVPTNGEQAERVLARYqPGSGSSMVGLSEFRAL 523
                 8999*****************9998888......78888777888877766524444567777777765 PP

  == domain 5  score: -0.1 bits;  conditional E-value: 1.1
   EF-hand_7  18 yldkeellrllrkifqgagegsklsdeelellfkef 53 
                 +l +eell++++ +       + l++ee+++ ++e+
  KOO25174.1 554 MLGVEELLSMCHGFR---LVPDRLREEEVKTAVREM 586
                 68899*999***988...555555777777766665 PP

>> Ank_2  Ankyrin repeats (3 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.6   0.0   1.8e-16   2.2e-13       1      75 [.     655     739 ..     655     748 .. 0.85
   2 !   35.6   0.0     9e-12   1.1e-08      26      66 ..     751     797 ..     742     800 .. 0.86

  Alignments for each domain:
  == domain 1  score: 50.6 bits;  conditional E-value: 1.8e-16
       Ank_2   1 LhlAakngnlelvklLl.egadpn.k..ngktaLhyAakngnleivklLleh......adndgrtpLhyAarsghleivklLlek 75 
                 L+ A+ +g l  v+ Ll ega ++    +g+++Lh Aa +g++e+v++L+ +       + dg ++Lh+A+++gh+ +v+lLl+ 
  KOO25174.1 655 LIEACTSGELAQVRRLLgEGAPVDgRgyDGWSPLHRAAAYGHEEAVEALIHAgaslplKTPDGFSALHWACEYGHPGVVRLLLKA 739
                 677999998899*****99999987346**********************647677744499*********************54 PP

  == domain 2  score: 35.6 bits;  conditional E-value: 9e-12
       Ank_2  26 gktaLhyAakngnleivklLleh......adndgrtpLhyAarsghl 66 
                  +t+Lh Aa  g+l +vklLl++       d++g tpLh Aar+ghl
  KOO25174.1 751 LWTPLHRAALDGHLAVVKLLLSEgapvavRDREGDTPLHDAARNGHL 797
                 49*******************977888866699************96 PP

>> Ank  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.0         9   1.1e+04       4       8 ..     363     367 ..     362     385 .. 0.74
   2 !   22.0   0.0   1.3e-07   0.00016       1      27 [.     683     710 ..     683     714 .. 0.92
   3 !   22.4   0.0   9.5e-08   0.00011       1      27 [.     716     743 ..     716     749 .. 0.84
   4 !   20.8   0.0   3.2e-07   0.00038       3      31 ..     752     781 ..     751     782 .. 0.89
   5 !    9.9   0.1   0.00088       1.1       2      15 ..     784     797 ..     783     803 .. 0.88

  Alignments for each domain:
  == domain 1  score: -2.8 bits;  conditional E-value: 9
                 BHHHH CS
         Ank   4 TPLHl 8  
                 T+LH 
  KOO25174.1 363 TALHH 367
                 9***4 PP

  == domain 2  score: 22.0 bits;  conditional E-value: 1.3e-07
                 TSBBHHHHHHHHTTHHHHHHHHT.TTST CS
         Ank   1 dGnTPLHlAatngkkriiklLLh.GAnl 27 
                 dG++PLH+Aa +g+++ +++L+h GA+l
  KOO25174.1 683 DGWSPLHRAAAYGHEEAVEALIHaGASL 710
                 8*********9***********769987 PP

  == domain 3  score: 22.4 bits;  conditional E-value: 9.5e-08
                 TSBBHHHHHHHHTTHHHHHHHH.TTTST CS
         Ank   1 dGnTPLHlAatngkkriiklLL.hGAnl 27 
                 dG+++LH+A+ +g++ +++lLL  +A +
  KOO25174.1 716 DGFSALHWACEYGHPGVVRLLLkARAPV 743
                 9*********99**********667544 PP

  == domain 4  score: 20.8 bits;  conditional E-value: 3.2e-07
                 BBHHHHHHHHTTHHHHHHHH.TTTSTTCBT CS
         Ank   3 nTPLHlAatngkkriiklLL.hGAnlnald 31 
                 +TPLH+Aa  g++ ++klLL  GA ++ +d
  KOO25174.1 752 WTPLHRAALDGHLAVVKLLLsEGAPVAVRD 781
                 7*******889999******77**988887 PP

  == domain 5  score: 9.9 bits;  conditional E-value: 0.00088
                 SBBHHHHHHHHTTH CS
         Ank   2 GnTPLHlAatngkk 15 
                 G+TPLH Aa+ng++
  KOO25174.1 784 GDTPLHDAARNGHL 797
                 9*********9985 PP

>> EF-hand_5  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.7   0.4     1e-09   1.2e-06       2      23 ..     179     200 ..     178     203 .. 0.89
   2 ?    4.6   0.0     0.021        25      12      25 .]     226     239 ..     226     239 .. 0.92
   3 !   11.9   0.0   9.8e-05      0.12       4      23 ..     266     285 ..     263     288 .. 0.84
   4 !   11.5   0.0   0.00013      0.16       3      25 .]     301     323 ..     300     323 .. 0.92
   5 !   15.9   0.0   5.6e-06    0.0067       2      23 ..     342     363 ..     341     366 .. 0.88
   6 ?    2.3   0.1      0.11   1.3e+02       4      25 .]     380     401 ..     378     402 .. 0.86
   7 ?   -0.1   0.0      0.62   7.4e+02       1      18 [.     463     480 ..     463     481 .. 0.86

  Alignments for each domain:
  == domain 1  score: 27.7 bits;  conditional E-value: 1e-09
                 HHHHHHH-SS-SSCE-HHHHHH CS
   EF-hand_5   2 kdtFqaiDlNgDGkIskeELkt 23 
                 k++F+ +D+NgDG I+++EL++
  KOO25174.1 179 KKAFETFDKNGDGSIDADELRE 200
                 678*****************98 PP

  == domain 2  score: 4.6 bits;  conditional E-value: 0.021
                 -SSCE-HHHHHHHH CS
   EF-hand_5  12 gDGkIskeELktlv 25 
                 +DGk++  E+ +lv
  KOO25174.1 226 RDGKLDLGEFARLV 239
                 7*********9986 PP

  == domain 3  score: 11.9 bits;  conditional E-value: 9.8e-05
                 HHHHH-SS-SSCE-HHHHHH CS
   EF-hand_5   4 tFqaiDlNgDGkIskeELkt 23 
                 +F+++D++g G++++ E k+
  KOO25174.1 266 AFSRFDVDGNGRLDAVEIKQ 285
                 4*************977765 PP

  == domain 4  score: 11.5 bits;  conditional E-value: 0.00013
                 HHHHHH-SS-SSCE-HHHHHHHH CS
   EF-hand_5   3 dtFqaiDlNgDGkIskeELktlv 25 
                 +++q+ D++++G +   E+ +lv
  KOO25174.1 301 AVLQKYDTDRSGGVELAEFAQLV 323
                 689****************9986 PP

  == domain 5  score: 15.9 bits;  conditional E-value: 5.6e-06
                 HHHHHHH-SS-SSCE-HHHHHH CS
   EF-hand_5   2 kdtFqaiDlNgDGkIskeELkt 23 
                 +++F  +D +g G+I++ EL+t
  KOO25174.1 342 RKAFAHFDSDGNGRIDAFELRT 363
                 567999**************98 PP

  == domain 6  score: 2.3 bits;  conditional E-value: 0.11
                 HHHHH-SS-SSCE-HHHHHHHH CS
   EF-hand_5   4 tFqaiDlNgDGkIskeELktlv 25 
                 ++++ D++++  ++++E+ +lv
  KOO25174.1 380 VLKKYDVDRSRELDIDEFAKLV 401
                 688999999999******9975 PP

  == domain 7  score: -0.1 bits;  conditional E-value: 0.62
                 HHHHHHHH-SS-SSCE-H CS
   EF-hand_5   1 lkdtFqaiDlNgDGkIsk 18 
                 l+++F  +D  g+G I++
  KOO25174.1 463 LRAAFATFDPEGSGAIDA 480
                 67889999999*****97 PP

>> Ank_3  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.0       3.7   4.4e+03       6      30 ..     655     678 ..     653     679 .. 0.79
   2 !   18.6   0.0   1.5e-06    0.0019       1      27 [.     683     708 ..     683     710 .. 0.91
   3 !   19.3   0.0   8.6e-07     0.001       1      27 [.     716     741 ..     716     745 .. 0.87
   4 !   18.7   0.0   1.4e-06    0.0017       3      29 ..     752     777 ..     750     779 .. 0.91
   5 ?    5.1   0.0     0.038        45       1      16 [.     783     798 ..     783     801 .. 0.89

  Alignments for each domain:
  == domain 1  score: -1.0 bits;  conditional E-value: 3.7
       Ank_3   6 LhlAarsgnleivkfLlenkgadvn 30 
                 L +A+ sg l+ v+ Ll   ga+v+
  KOO25174.1 655 LIEACTSGELAQVRRLLG-EGAPVD 678
                 778999999954999999.688876 PP

  == domain 2  score: 18.6 bits;  conditional E-value: 1.5e-06
       Ank_3   1 nGetpLhlAarsgnleivkfLlenkga 27 
                 +G++pLh+Aa +g+ e v++L+   ga
  KOO25174.1 683 DGWSPLHRAAAYGHEEAVEALIH-AGA 708
                 69********************9.676 PP

  == domain 3  score: 19.3 bits;  conditional E-value: 8.6e-07
       Ank_3   1 nGetpLhlAarsgnleivkfLlenkga 27 
                 +G ++Lh+A+++g++ +v++Ll+   a
  KOO25174.1 716 DGFSALHWACEYGHPGVVRLLLK-ARA 741
                 699*******************9.455 PP

  == domain 4  score: 18.7 bits;  conditional E-value: 1.4e-06
       Ank_3   3 etpLhlAarsgnleivkfLlenkgadv 29 
                 +tpLh+Aa+ g+l++vk+Ll   ga+v
  KOO25174.1 752 WTPLHRAALDGHLAVVKLLLS-EGAPV 777
                 9********************.79887 PP

  == domain 5  score: 5.1 bits;  conditional E-value: 0.038
       Ank_3   1 nGetpLhlAarsgnle 16 
                 +G tpLh Aar+g+l+
  KOO25174.1 783 EGDTPLHDAARNGHLA 798
                 599**********986 PP

>> EF-hand_8  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.0   4.6e-06    0.0055       2      54 ..     190     241 ..     189     242 .. 0.95
   2 !    8.3   0.0    0.0017         2      20      44 ..     257     279 ..     251     283 .. 0.82
   3 !   19.9   0.0   4.1e-07   0.00049       9      54 ..     282     325 ..     278     326 .. 0.93
   4 !    8.6   0.0    0.0014       1.7      25      50 ..     338     363 ..     338     368 .. 0.85
   5 !    8.7   0.0    0.0013       1.6      10      44 ..     450     479 ..     447     481 .. 0.85
   6 ?   -3.3   0.0       7.2   8.6e+03      42      54 ..     514     526 ..     511     527 .. 0.81

  Alignments for each domain:
  == domain 1  score: 16.5 bits;  conditional E-value: 4.6e-06
   EF-hand_8   2 kgkItreelrrilrilglkkglseeevdilfrefDtd.gdGkisfeEFcvller 54 
                 +g+I+ +elr++l+ lgl+   s+ + ++++ + Dt  +dGk+++ EF  l+++
  KOO25174.1 190 DGSIDADELREALKYLGLN--ASAAQTREVLERYDTGfRDGKLDLGEFARLVQD 241
                 8******************..***************66***********99987 PP

  == domain 2  score: 8.3 bits;  conditional E-value: 0.0017
   EF-hand_8  20 kkglseeevdilfrefDtdgdGkis 44 
                    + +e v++ f++fD dg+G+++
  KOO25174.1 257 G--TADERVRVAFSRFDVDGNGRLD 279
                 3..55666**************997 PP

  == domain 3  score: 19.9 bits;  conditional E-value: 4.1e-07
   EF-hand_8   9 elrrilrilglkkglseeevdilfrefDtdgdGkisfeEFcvller 54 
                 e + +l++lg+    s +e+ +++ + Dtd++G + + EF +l+ +
  KOO25174.1 282 EIKQALATLGMV--ASSSEAVAVLQKYDTDRSGGVELAEFAQLVND 325
                 67999*******..***************************99876 PP

  == domain 4  score: 8.6 bits;  conditional E-value: 0.0014
   EF-hand_8  25 eeevdilfrefDtdgdGkisfeEFcv 50 
                 ++ev+  f +fD dg+G+i+  E   
  KOO25174.1 338 PHEVRKAFAHFDSDGNGRIDAFELRT 363
                 6899999*************998765 PP

  == domain 5  score: 8.7 bits;  conditional E-value: 0.0013
   EF-hand_8  10 lrrilrilglkkglseeevdilfrefDtdgdGkis 44 
                 ++ ++   gl+   ++ee+++ f +fD +g+G+i+
  KOO25174.1 450 FVLAS---GLA--HTDEELRAAFATFDPEGSGAID 479
                 55555...888..79******************97 PP

  == domain 6  score: -3.3 bits;  conditional E-value: 7.2
   EF-hand_8  42 kisfeEFcvller 54 
                 ++++ EF +l+++
  KOO25174.1 514 MVGLSEFRALVAD 526
                 7899999999876 PP

>> Ank_5  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.0   2.3e-05     0.027       4      49 ..     673     717 ..     670     719 .. 0.85
   2 !   27.2   0.0   2.8e-09   3.4e-06       1      43 [.     703     745 ..     703     753 .. 0.80
   3 !   26.3   0.1   5.6e-09   6.7e-06       8      54 ..     745     789 ..     743     791 .. 0.89
   4 !   15.6   0.1   1.2e-05     0.015       1      31 [.     770     799 ..     770     801 .. 0.91

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 2.3e-05
       Ank_5   4 hg.padvnrldgggntpLhvAakygaadvvrlLlargadlnltdsrG 49 
                 +g p+d   +dg+  +pLh Aa yg+ + v+ L+  ga+l l++ +G
  KOO25174.1 673 EGaPVDGRGYDGW--SPLHRAAAYGHEEAVEALIHAGASLPLKTPDG 717
                 5666777777777..*******************9999999999998 PP

  == domain 2  score: 27.2 bits;  conditional E-value: 2.8e-09
       Ank_5   1 LlehgpadvnrldgggntpLhvAakygaadvvrlLl.argadln 43 
                 L+++g a++  + ++g+++Lh+A++yg++ vvrlLl ar   ++
  KOO25174.1 703 LIHAG-ASLPLKTPDGFSALHWACEYGHPGVVRLLLkARAPVAD 745
                 77888.9999999***********************64444444 PP

  == domain 3  score: 26.3 bits;  conditional E-value: 5.6e-09
       Ank_5   8 dvnrldgggntpLhvAakygaadvvrlLlargadlnltdsrGltald 54 
                 dv ++  +  tpLh Aa  g++ vv+lLl +ga   ++d +G+t+l+
  KOO25174.1 745 DVSDETLW--TPLHRAALDGHLAVVKLLLSEGAPVAVRDREGDTPLH 789
                 55555555..***********************************96 PP

  == domain 4  score: 15.6 bits;  conditional E-value: 1.2e-05
       Ank_5   1 Llehg.padvnrldgggntpLhvAakygaadv 31 
                 Ll++g p++v +++g+  tpLh Aa++g++ v
  KOO25174.1 770 LLSEGaPVAVRDREGD--TPLHDAARNGHLAV 799
                 8999*99999999999..***********976 PP

>> EF-hand_9  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.3   0.0     0.042        50       3      63 ..     181     240 ..     179     242 .. 0.85
   2 ?    1.3   0.0      0.36   4.3e+02       4      40 ..     267     306 ..     265     327 .. 0.56
   3 !    6.3   0.0    0.0098        12       3      63 ..     344     402 ..     342     404 .. 0.89
   4 ?    0.3   0.0      0.73   8.7e+02       3      29 ..     466     492 ..     456     526 .. 0.57

  Alignments for each domain:
  == domain 1  score: 4.3 bits;  conditional E-value: 0.042
   EF-hand_9   3 vFevcDtqktGrVpvsrlidyLravtaqdpeeseLeelakelDPdgedasvdldtflrvmr 63 
                  Fe +D +  G +   +l + L+  +  + + ++  e  + +D + +d+++dl  f r ++
  KOO25174.1 181 AFETFDKNGDGSIDADELREALKYLGL-NASAAQTREVLERYDTGFRDGKLDLGEFARLVQ 240
                 6************************99.556667777788899999999999999998765 PP

  == domain 2  score: 1.3 bits;  conditional E-value: 0.36
   EF-hand_9   4 FevcDtqktGrVpvsrlidyLravtaqd.pees..eLeel 40 
                 F+ +D++  Gr    ++++ L   +  + ++e+   L+++
  KOO25174.1 267 FSRFDVDGNGRLDAVEIKQALATLGMVAsSSEAvaVLQKY 306
                 8889999999865555555555444432033322344444 PP

  == domain 3  score: 6.3 bits;  conditional E-value: 0.0098
   EF-hand_9   3 vFevcDtqktGrVpvsrlidyLravtaqdpeeseLeelakelDPdgedasvdldtflrvmr 63 
                  F  +D +  Gr+   +l + L + + ++++  +L  l+ ++D d    ++d+d f + ++
  KOO25174.1 344 AFAHFDSDGNGRIDAFELRTALHHLGVEASSAQALAVLK-KYDVDRS-RELDIDEFAKLVM 402
                 5999***********************999999998886.6999988.99******98776 PP

  == domain 4  score: 0.3 bits;  conditional E-value: 0.73
   EF-hand_9   3 vFevcDtqktGrVpvsrlidyLravta 29 
                  F  +D++  G +  + l   L   + 
  KOO25174.1 466 AFATFDPEGSGAIDAKALGGALARLGV 492
                 466666666666666666555555555 PP

>> Dockerin_1  Dockerin type I domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.0   0.0     0.049        59      34      47 ..     182     195 ..     171     217 .. 0.77
   2 ?    4.2   0.1     0.042        50      17      50 ..     237     283 ..     226     290 .. 0.61
   3 ?    6.4   0.5    0.0086        10       2      57 ..     270     326 ..     269     368 .. 0.82
   4 ?    0.8   0.1      0.47   5.6e+02       2      22 ..     348     368 ..     347     393 .. 0.56

  Alignments for each domain:
  == domain 1  score: 4.0 bits;  conditional E-value: 0.049
                 HGGGSTT-SSCESH CS
  Dockerin_1  34 gkaaDvNgDGrvna 47 
                  +++D NgDG+++a
  KOO25174.1 182 FETFDKNGDGSIDA 195
                 56778888888877 PP

  == domain 2  score: 4.2 bits;  conditional E-value: 0.042
                 HHHHHCT.............SSEBTTSCCCHGGGSTT-SSCESHHHH CS
  Dockerin_1  17 liinyln.............qregqssssngkaaDvNgDGrvnalDa 50 
                 ++ + ln              + ++        +Dv+g+Gr +a  +
  KOO25174.1 237 RLVQDLNsftggggaldggmGTADERVRVAFSRFDVDGNGRLDAVEI 283
                 55555555555555555444444444455556789999999888765 PP

  == domain 3  score: 6.4 bits;  conditional E-value: 0.0086
                 TETTSSSC-SHHHHHHHHHHCT....SSEBTTSCCCHGGGSTT-SSCESHHHHHHHHHHH CS
  Dockerin_1   2 gDVNgDgkVnalDalliinyln....qregqssssngkaaDvNgDGrvnalDallvinyL 57 
                 +DV+g+g+   lDa  i+++l      ++ +++    +++D ++ G v    ++++ n L
  KOO25174.1 270 FDVDGNGR---LDAVEIKQALAtlgmVASSSEAVAVLQKYDTDRSGGVELAEFAQLVNDL 326
                 68888886...8999999999988886677777777888888888888888888777765 PP

  == domain 4  score: 0.8 bits;  conditional E-value: 0.47
                 TETTSSSC-SHHHHHHHHHHC CS
  Dockerin_1   2 gDVNgDgkVnalDalliinyl 22 
                 +D +g+g+++a  +     +l
  KOO25174.1 348 FDSDGNGRIDAFELRTALHHL 368
                 466666666665555555555 PP

>> SPARC_Ca_bdg  Secreted protein acidic and rich in cysteine Ca binding region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.0   0.0     0.024        29      56     110 ..     178     235 ..     172     237 .. 0.68
   2 ?    5.0   0.0     0.024        29      54     111 ..     261     320 ..     256     322 .. 0.81
   3 ?    1.0   0.0      0.42     5e+02      54     111 ..     339     398 ..     330     400 .. 0.74

  Alignments for each domain:
  == domain 1  score: 5.0 bits;  conditional E-value: 0.024
  SPARC_Ca_bdg  56 vawkFsklDtnsdkvlsksELaplrap..lvklehCikpflescDa.dkdkkislkEw 110
                   v+  F+++D+n d++++  EL++  +   l      +++ le+ D+  +d+k++l E+
    KOO25174.1 178 VKKAFETFDKNGDGSIDADELREALKYlgLNASAAQTREVLERYDTgFRDGKLDLGEF 235
                   666899***************8764440144445556667777776346777777776 PP

  == domain 2  score: 5.0 bits;  conditional E-value: 0.024
  SPARC_Ca_bdg  54 epvawkFsklDtnsdkvlsksELaplraplvklehC..ikpflescDadkdkkislkEwc 111
                   e v+  Fs++D++ ++ l+  E+++  a+l  + +     + l++ D+d+ + ++l+E++
    KOO25174.1 261 ERVRVAFSRFDVDGNGRLDAVEIKQALATLGMVASSseAVAVLQKYDTDRSGGVELAEFA 320
                   678889*****************9988877555555005578999****99999999997 PP

  == domain 3  score: 1.0 bits;  conditional E-value: 0.42
  SPARC_Ca_bdg  54 epvawkFsklDtnsdkvlsksELaplraplvklehCik..pflescDadkdkkislkEwc 111
                   ++v+  F ++D + ++ ++  EL+   + l    +  +  + l++ D+d+ ++++  E++
    KOO25174.1 339 HEVRKAFAHFDSDGNGRIDAFELRTALHHLGVEASSAQalAVLKKYDVDRSRELDIDEFA 398
                   5677789999***9999*****99876655433333321157899999999999999987 PP

>> Caleosin  Caleosin related protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.3   0.0     0.028        34       9      40 ..     181     212 ..     175     220 .. 0.85
   2 ?   -0.2   0.0       0.7   8.4e+02      13      45 ..     270     302 ..     264     324 .. 0.75
   3 ?    5.0   0.0     0.018        21       8      45 ..     343     380 ..     339     405 .. 0.87
   4 ?   -2.1   0.0       2.6   3.2e+03      98     124 ..     380     406 ..     379     412 .. 0.86

  Alignments for each domain:
  == domain 1  score: 4.3 bits;  conditional E-value: 0.028
    Caleosin   9 HvaFfDrdkdGiiypldtyrgfralgfnvlls 40 
                  ++ fD++ dG i   +  ++++ lg+n+ ++
  KOO25174.1 181 AFETFDKNGDGSIDADELREALKYLGLNASAA 212
                 5667***********************98776 PP

  == domain 2  score: -0.2 bits;  conditional E-value: 0.7
    Caleosin  13 fDrdkdGiiypldtyrgfralgfnvllsllaal 45 
                 fD d +G +  +++ +++ +lg+ +  s ++a+
  KOO25174.1 270 FDVDGNGRLDAVEIKQALATLGMVASSSEAVAV 302
                 888888888888888888888886666655444 PP

  == domain 3  score: 5.0 bits;  conditional E-value: 0.018
    Caleosin   8 qHvaFfDrdkdGiiypldtyrgfralgfnvllsllaal 45 
                 + +a+fD+d +G i   +  +++++lg+++  + + a+
  KOO25174.1 343 KAFAHFDSDGNGRIDAFELRTALHHLGVEASSAQALAV 380
                 66799**********************99877766554 PP

  == domain 4  score: -2.1 bits;  conditional E-value: 2.6
    Caleosin  98 ifskyakekkdaltlkevlellkgqre 124
                 +++ky+ +++ +l ++e+ +l+   re
  KOO25174.1 380 VLKKYDVDRSRELDIDEFAKLVMDVRE 406
                 689***************999877665 PP

>> PIG-L  GlcNAc-PI de-N-acetylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.8   0.0     0.017        21      47      85 ..     186     232 ..     173     327 .. 0.80
   2 ?    4.3   0.0     0.049        58      49      86 ..     351     405 ..     326     460 .. 0.63

  Alignments for each domain:
  == domain 1  score: 5.8 bits;  conditional E-value: 0.017
                 HH-HHHHHHHHHHHHHHHHCTE.....EEEEECC.....CBTT-STT CS
       PIG-L  47 ekeelaeiRekEaraaakhlgva...dedvffld.....fpDgsles 85 
                 +k++ + i ++E+r+a+k+lg++   ++  ++l+     f+Dg+l+ 
  KOO25174.1 186 DKNGDGSIDADELREALKYLGLNasaAQTREVLErydtgFRDGKLDL 232
                 45788999**************8666444444444445555555544 PP

  == domain 2  score: 4.3 bits;  conditional E-value: 0.049
                 -HHHHHHHHHHHHHHHHCTE..EEEEECC....CBTT-STT..............S CS
       PIG-L  49 eelaeiRekEaraaakhlgvadedvffld....fpDgsles..............y 86 
                 ++ ++i + E+r a+ hlgv+++++ +l     + D   ++               
  KOO25174.1 351 DGNGRIDAFELRTALHHLGVEASSAQALAvlkkY-DVDRSReldidefaklvmdvR 405
                 677888999***********97777777753442.221111223333333333330 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (814 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       469  (0.0261587); expected 358.6 (0.02)
Passed bias filter:                      406  (0.0226449); expected 358.6 (0.02)
Passed Vit filter:                        50  (0.00278878); expected 17.9 (0.001)
Passed Fwd filter:                        15  (0.000836633); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              15  [number of targets reported over threshold]
# CPU time: 0.63u 0.30s 00:00:00.93 Elapsed: 00:00:00.42
# Mc/sec: 5877.08
//
Query:       KOO25175.1  [L=497]
Description: ankyrin repeat protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.8e-39  133.1   6.3    1.1e-13   51.6   0.1    5.5  5  Ank_2     Ankyrin repeats (3 copies)
      2e-33  113.4  17.8    4.4e-05   23.7   0.0    9.4  9  Ank       Ankyrin repeat
    3.1e-32  110.5  11.7    3.9e-08   33.7   0.2    7.8  8  Ank_4     Ankyrin repeats (many copies)
    1.1e-29  102.1  18.1    1.4e-07   31.7   0.1    7.9  8  Ank_5     Ankyrin repeats (many copies)
    4.6e-28   94.2  11.1     0.0038   17.6   0.0    9.4  9  Ank_3     Ankyrin repeat


Domain annotation for each model (and alignments):
>> Ank_2  Ankyrin repeats (3 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.0   5.2e-06     0.019      49      83 .]      40      79 ..      15      79 .. 0.81
   2 !   30.1   0.8   1.5e-10   5.4e-07       1      80 [.      48     143 ..      48     146 .. 0.76
   3 !   24.1   0.9   1.1e-08   3.9e-05       2      64 ..     121     194 ..     120     208 .. 0.77
   4 !   37.9   0.0   5.5e-13     2e-09      14      80 ..     208     284 ..     196     287 .. 0.76
   5 !   51.6   0.1     3e-17   1.1e-13       1      78 [.     261     352 ..     261     356 .. 0.89

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 5.2e-06
       Ank_2 49 adndgrtpLhyAars.....ghleivklLlekgadinlkd 83
                +  +g+ pLh+A+ s     + +++vklL+e+gad+n+ d
  KOO25175.1 40 VGAEGQMPLHLACDSaddaeSTEKLVKLLCERGADVNAED 79
                447799*******9987665468**************986 PP

  == domain 2  score: 30.1 bits;  conditional E-value: 1.5e-10
       Ank_2   1 LhlAak...ngnle....lvklLl.egadpn..k.ngktaLhyAakngnleivklLleh.......adndgrtpLhyAarsghleivklLlekgadin 80 
                 LhlA+    +   e    lvklL   gad+n  +   +t+L +A++   l ++++L+eh        d++ +tp h+ a +g  +++   l kga+++
  KOO25175.1  48 LHLACDsadD--AEstekLVKLLCeRGADVNaeDcARRTPLLAACELKALGAARYLIEHtsaslraRDDKRMTPVHWLAAHGAADLLGACLAKGAEVD 143
                 7888884431..332234899998999***9863788**********99999******99988774447788****9999998777766555677776 PP

  == domain 3  score: 24.1 bits;  conditional E-value: 1.1e-08
       Ank_2   2 hlAakngnlelvklLl.egadpn..k.ngktaLhyAakngnleivklLleh......adndgrtpLhyAars.g 64 
                 h+ a +g+ +l+   l +ga+++  +   +t+Lh+A ++g l ++  Ll++      +d++ rt++h+A ++ g
  KOO25175.1 121 HWLAAHGAADLLGACLaKGAEVDavNaSQQTPLHLALMRGELVCCFVLLDAnanaaaLDEERRTAMHLAMQFsG 194
                 67777785666666668999998764688***********88889999985556666779999******98753 PP

  == domain 4  score: 37.9 bits;  conditional E-value: 5.5e-13
       Ank_2  14 klLl......egadpnkngktaLhyAakngnleivklLleh......adndgrtpLhyAarsghleivklLlekgadin 80 
                 +lL       ++ad+  +++t+Lh+A  ++ l +vk+Ll+       +d   rtpLh+A+  +  e ++ Ll+++ad+ 
  KOO25175.1 208 RLLQlapslvNEADA--DKRTPLHWASGKNALPCVKALLSSgaevdaVDWAQRTPLHWAVLVDAAESAEALLQSKADLR 284
                 444233222244555..57********************9666756666889********99999*******9999986 PP

  == domain 5  score: 51.6 bits;  conditional E-value: 3e-17
       Ank_2   1 LhlAakngnlelvklLl.egadpn..k.ngktaLhyAakngnleivklLleh..........adndgrtpLhyAarsghleivklLlekgad 78 
                 Lh+A++ ++ e  + Ll ++ad++  + +++t+Lh+A+ +  + ++klLl h          +d  g+t+LhyAar g + +vk Ll  ga+
  KOO25175.1 261 LHWAVLVDAAESAEALLqSKADLRhaDrDKRTPLHWACDRAAEGCCKLLLGHlamgdpmidaVDWGGYTALHYAARRGATGCVKSLLALGAN 352
                 8*****98889******9999998754899*********99989******9999988887777799*********************87876 PP

>> Ank  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.0   0.0   8.8e-08   0.00032       2      32 .]      44      80 ..      43      80 .. 0.83
   2 ?    4.6   0.0     0.014        51       3      32 .]      83     114 ..      82     114 .. 0.84
   3 !    6.7   0.2     0.003        11       3      31 ..     117     146 ..     116     147 .. 0.79
   4 !   11.7   0.2   7.8e-05      0.28       3      31 ..     150     179 ..     149     180 .. 0.80
   5 ?   -0.7   0.0      0.66   2.4e+03       3      11 ..     183     193 ..     182     218 .. 0.65
   6 !   23.7   0.0   1.2e-08   4.4e-05       2      31 ..     224     254 ..     223     255 .. 0.87
   7 !   11.2   0.0   0.00012      0.41       3      29 ..     258     285 ..     257     288 .. 0.82
   8 !   17.6   0.0   1.1e-06    0.0038       2      23 ..     290     312 ..     289     324 .. 0.73
   9 !   20.5   0.1   1.3e-07   0.00046       2      26 ..     327     352 ..     326     357 .. 0.88

  Alignments for each domain:
  == domain 1  score: 21.0 bits;  conditional E-value: 8.8e-08
                SBBHHHHHH........HHTTHHHHHHHH.TTTSTTCBTT CS
         Ank  2 GnTPLHlAa........tngkkriiklLL.hGAnlnaldn 32
                G  PLHlA+        t++    +klL  +GA++na d+
  KOO25175.1 44 GQMPLHLACdsaddaesTEK---LVKLLCeRGADVNAEDC 80
                566*****987777777777...***99988******996 PP

  == domain 2  score: 4.6 bits;  conditional E-value: 0.014
                 BBHHHHHH...HHTTHHHHHHHH.T.TTSTTCBTT CS
         Ank   3 nTPLHlAa...tngkkriiklLL.h.GAnlnaldn 32 
                 +TPL  A+     g    +++L+ h +A+l a+d+
  KOO25175.1  83 RTPLLAACelkALG---AARYLIeHtSASLRARDD 114
                 59****99666556...999***9878***99995 PP

  == domain 3  score: 6.7 bits;  conditional E-value: 0.003
                 BBHHH.HHHHHTTHHHHHHHH.TTTSTTCBT CS
         Ank   3 nTPLH.lAatngkkriiklLL.hGAnlnald 31 
                 +TP H lAa  g ++ + + L +GA+++a++
  KOO25175.1 117 MTPVHwLAA-HGAADLLGACLaKGAEVDAVN 146
                 7****8899.686666666698899999998 PP

  == domain 4  score: 11.7 bits;  conditional E-value: 7.8e-05
                 BBHHHHHHHHTTHHHHHHHH.TTTSTTCBT CS
         Ank   3 nTPLHlAatngkkriiklLL.hGAnlnald 31 
                  TPLHlA ++g + ++  LL   An +ald
  KOO25175.1 150 QTPLHLALMRGELVCCFVLLdANANAAALD 179
                 5******99999999999994457766665 PP

  == domain 5  score: -0.7 bits;  conditional E-value: 0.66
                 BBHHHHHH..H CS
         Ank   3 nTPLHlAa..t 11 
                 +T+ HlA   +
  KOO25175.1 183 RTAMHLAMqfS 193
                 5999**86332 PP

  == domain 6  score: 23.7 bits;  conditional E-value: 1.2e-08
                 SBBHHHHHHHHTT.HHHHHHHH.TTTSTTCBT CS
         Ank   2 GnTPLHlAatngk.kriiklLL.hGAnlnald 31 
                  +TPLH+A+ +++ + ++k+LL +GA+++a+d
  KOO25175.1 224 KRTPLHWAS-GKNaLPCVKALLsSGAEVDAVD 254
                 58*****99.566799******88******99 PP

  == domain 7  score: 11.2 bits;  conditional E-value: 0.00012
                 BBHHHHHHHHTTHHHHHHHHTT.TSTTC CS
         Ank   3 nTPLHlAatngkkriiklLLhG.Anlna 29 
                 +TPLH+A+  + ++ +++LL++ A+l  
  KOO25175.1 258 RTPLHWAVLVDAAESAEALLQSkADLRH 285
                 6*******999999******54499954 PP

  == domain 8  score: 17.6 bits;  conditional E-value: 1.1e-06
                 SBBHHHHHH...HHTTHHHHHHHH.T CS
         Ank   2 GnTPLHlAa...tngkkriiklLL.h 23 
                  +TPLH+A+    +g   ++klLL h
  KOO25175.1 290 KRTPLHWACdraAEG---CCKLLLgH 312
                 58******9777667...******54 PP

  == domain 9  score: 20.5 bits;  conditional E-value: 1.3e-07
                 SBBHHHHHHHHTTHHHHHHHH.TTTS CS
         Ank   2 GnTPLHlAatngkkriiklLL.hGAn 26 
                 G+T+LH+Aa++g + ++k LL  GAn
  KOO25175.1 327 GYTALHYAARRGATGCVKSLLaLGAN 352
                 9********888888*****955998 PP

>> Ank_4  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.7   0.0     0.057     2e+02      26      43 ..      32      52 ..      13      56 .. 0.77
   2 !    5.2   0.0    0.0092        33       4      29 ..      47      77 ..      45      80 .. 0.88
   3 !   12.7   0.1   4.3e-05      0.15       1      40 [.      82     121 ..      82     121 .. 0.95
   4 !   33.7   0.2   1.1e-11   3.9e-08       1      46 [.     116     160 ..     116     169 .. 0.94
   5 ?    1.1   0.0      0.18   6.5e+02      20      44 ..     168     191 ..     164     195 .. 0.81
   6 !   29.1   0.0   2.9e-10     1e-06       2      43 ..     225     265 ..     224     267 .. 0.94
   7 !   17.1   0.1   1.7e-06     0.006      15      55 .]     271     310 ..     269     310 .. 0.90
   8 !   30.7   0.1   9.7e-11   3.5e-07       2      54 ..     291     346 ..     290     347 .. 0.89

  Alignments for each domain:
  == domain 1  score: 2.7 bits;  conditional E-value: 0.057
       Ank_4 26 d....inaqdnrsGetalhiAa 43
                +    +na+  ++G+ +lh A+
  KOO25175.1 32 SgsimVNAV-GAEGQMPLHLAC 52
                455558999.99*********9 PP

  == domain 2  score: 5.2 bits;  conditional E-value: 0.0092
       Ank_4  4 aLhyaai.....sgrlelvrlLlekgadina 29
                +Lh a+      ++ ++lv+lL e+gad+na
  KOO25175.1 47 PLHLACDsaddaESTEKLVKLLCERGADVNA 77
                589999999888888999***********97 PP

  == domain 3  score: 12.7 bits;  conditional E-value: 4.3e-05
       Ank_4   1 eltaLhyaaisgrlelvrlLlek.gadinaqdnrsGetalh 40 
                 ++t+L +a++   l ++r+L+e+  a++ a+ ++  +t++h
  KOO25175.1  82 RRTPLLAACELKALGAARYLIEHtSASLRAR-DDKRMTPVH 121
                 589********************99******.88899**99 PP

  == domain 4  score: 33.7 bits;  conditional E-value: 1.1e-11
       Ank_4   1 eltaLhyaaisgrlelvrlLlekgadinaqdnrsGetalhiAakrg 46 
                 ++t+ h++a++g  +l+  +l+kga+++a+ n+s++t+lh A++rg
  KOO25175.1 116 RMTPVHWLAAHGAADLLGACLAKGAEVDAV-NASQQTPLHLALMRG 160
                 69****************************.**************9 PP

  == domain 5  score: 1.1 bits;  conditional E-value: 0.18
       Ank_4  20 LlekgadinaqdnrsGetalhiAak 44 
                 Ll+ +a+  a  +++ +ta+h A +
  KOO25175.1 168 LLDANANAAAL-DEERRTAMHLAMQ 191
                 77777888887.99999****9965 PP

  == domain 6  score: 29.1 bits;  conditional E-value: 2.9e-10
       Ank_4   2 ltaLhyaaisgrlelvrlLlekgadinaqdnrsGetalhiAa 43 
                 +t+Lh+a  ++ l++v+ Ll++ga+++a+d + ++t+lh A+
  KOO25175.1 225 RTPLHWASGKNALPCVKALLSSGAEVDAVDWA-QRTPLHWAV 265
                 79***************************656.********8 PP

  == domain 7  score: 17.1 bits;  conditional E-value: 1.7e-06
       Ank_4  15 elvrlLlekgadinaqdnrsGetalhiAakrgnveilklLl 55 
                 e+++ Ll+++ad+ +  +r+ +t+lh A+ r    + klLl
  KOO25175.1 271 ESAEALLQSKADLRHA-DRDKRTPLHWACDRAAEGCCKLLL 310
                 57889**********7.************998888888886 PP

  == domain 8  score: 30.7 bits;  conditional E-value: 9.7e-11
       Ank_4   2 ltaLhyaaisgrlelvrlLlekgad....inaqdnrsGetalhiAakrgnveilklL 54 
                 +t+Lh+a+    + +++lLl + a     i+a+ +  G talh+Aa+rg   ++k L
  KOO25175.1 291 RTPLHWACDRAAEGCCKLLLGHLAMgdpmIDAV-DWGGYTALHYAARRGATGCVKSL 346
                 79******************998777788****.555************99999866 PP

>> Ank_5  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.9   0.0   2.9e-05      0.11      10      53 ..      38      86 ..      33      89 .. 0.86
   2 !    9.5   0.1   0.00034       1.2       3      38 ..      70     104 ..      67     106 .. 0.90
   3 !   24.0   0.2     1e-08   3.6e-05       1      56 []     101     156 ..     101     156 .. 0.99
   4 !   11.9   0.8     6e-05      0.22       5      56 .]     139     189 ..     136     189 .. 0.89
   5 !   16.0   0.0   3.2e-06     0.012      15      36 ..     223     244 ..     209     252 .. 0.80
   6 !   12.3   0.1   4.5e-05      0.16       6      37 ..     249     278 ..     243     284 .. 0.78
   7 !   11.4   0.1   8.9e-05      0.32       7      36 ..     281     310 ..     276     318 .. 0.74
   8 !   31.7   0.1   3.8e-11   1.4e-07      14      55 ..     325     366 ..     313     366 .. 0.89

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 2.9e-05
       Ank_5 10 nrldgggntpLhvAak.ygaadvvrlLl....argadlnltdsrGltal 53
                n+   +g+ pLh+A+  +  a+  ++L+    +rgad n+ d   +t+l
  KOO25175.1 38 NAVGAEGQMPLHLACDsADDAESTEKLVkllcERGADVNAEDCARRTPL 86
                56666899*******************************9986667776 PP

  == domain 2  score: 9.5 bits;  conditional E-value: 0.00034
       Ank_5   3 ehgpadvnrldgggntpLhvAakygaadvvrlLlar 38 
                 e+g advn++d  + tpL  A++  a+  +r+L+++
  KOO25175.1  70 ERG-ADVNAEDCARRTPLLAACELKALGAARYLIEH 104
                 566.*****************************976 PP

  == domain 3  score: 24.0 bits;  conditional E-value: 1e-08
       Ank_5   1 LlehgpadvnrldgggntpLhvAakygaadvvrlLlargadlnltdsrGltaldlA 56 
                 L+eh +a++ ++d +++tp h+ a +gaad++  +la ga  ++ +++ +t+l+lA
  KOO25175.1 101 LIEHTSASLRARDDKRMTPVHWLAAHGAADLLGACLAKGAEVDAVNASQQTPLHLA 156
                 899***************************************************98 PP

  == domain 4  score: 11.9 bits;  conditional E-value: 6e-05
       Ank_5   5 gpadvnrldgggntpLhvAakygaadvvrlLlargadlnltdsrGltaldlA 56 
                 g a v++ +   +tpLh+A  +g + ++ +Ll+ +a++ + d++ +ta++lA
  KOO25175.1 139 G-AEVDAVNASQQTPLHLALMRGELVCCFVLLDANANAAALDEERRTAMHLA 189
                 5.66667777778*************************************98 PP

  == domain 5  score: 16.0 bits;  conditional E-value: 3.2e-06
       Ank_5  15 ggntpLhvAakygaadvvrlLl 36 
                 ++ tpLh+A+ ++a+++v+ Ll
  KOO25175.1 223 DKRTPLHWASGKNALPCVKALL 244
                 344******************9 PP

  == domain 6  score: 12.3 bits;  conditional E-value: 4.5e-05
       Ank_5   6 padvnrldgggntpLhvAakygaadvvrlLla 37 
                  +d  ++ ++  tpLh+A+   aa+ ++ Ll 
  KOO25175.1 249 EVDAVDWAQR--TPLHWAVLVDAAESAEALLQ 278
                 4677778777..******************93 PP

  == domain 7  score: 11.4 bits;  conditional E-value: 8.9e-05
       Ank_5   7 advnrldgggntpLhvAakygaadvvrlLl 36 
                 ad+ + d+++ tpLh+A+ + a  +++lLl
  KOO25175.1 281 ADLRHADRDKRTPLHWACDRAAEGCCKLLL 310
                 78888999999*******966655555555 PP

  == domain 8  score: 31.7 bits;  conditional E-value: 3.8e-11
       Ank_5  14 gggntpLhvAakygaadvvrlLlargadlnltdsrGltaldl 55 
                  gg+t+Lh+Aa++ga  +v+ Lla ga++++   +G+++ dl
  KOO25175.1 325 WGGYTALHYAARRGATGCVKSLLALGANRRMVSMSGELPADL 366
                 3688***********************************996 PP

>> Ank_3  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.6   0.0   1.1e-06    0.0038       1      31 []      43      77 ..      43      77 .. 0.89
   2 !    7.3   0.1    0.0024       8.5       3      29 ..      83     109 ..      81     111 .. 0.87
   3 !    7.1   0.0    0.0027       9.7       3      30 ..     117     143 ..     115     144 .. 0.93
   4 !    9.0   0.1   0.00068       2.5       2      27 ..     149     173 ..     148     177 .. 0.76
   5 ?   -0.6   0.0       0.9   3.2e+03       3      10 ..     183     190 ..     181     193 .. 0.83
   6 !   14.6   0.0     1e-05     0.036       2      30 ..     224     251 ..     223     252 .. 0.92
   7 !   10.7   0.0   0.00019      0.68       2      30 ..     257     284 ..     256     285 .. 0.90
   8 !   10.4   0.1   0.00023      0.82       2      24 ..     290     312 ..     289     315 .. 0.85
   9 !   15.0   0.0   7.3e-06     0.026       2      28 ..     327     352 ..     326     355 .. 0.92

  Alignments for each domain:
  == domain 1  score: 17.6 bits;  conditional E-value: 1.1e-06
       Ank_3  1 nGetpLhlAarsgnl....e.ivkfLlenkgadvna 31
                +G+ pLhlA+ s++     e +vk+L+e +gadvna
  KOO25175.1 43 EGQMPLHLACDSADDaestEkLVKLLCE-RGADVNA 77
                5899***********8876259******.*****96 PP

  == domain 2  score: 7.3 bits;  conditional E-value: 0.0024
       Ank_3   3 etpLhlAarsgnleivkfLlenkgadv 29 
                 +tpL  A++   l  +++L+e+  a +
  KOO25175.1  83 RTPLLAACELKALGAARYLIEHTSASL 109
                 8************99******876665 PP

  == domain 3  score: 7.1 bits;  conditional E-value: 0.0027
       Ank_3   3 etpLhlAarsgnleivkfLlenkgadvn 30 
                 +tp h+ a +g  +++ ++l  kga+v+
  KOO25175.1 117 MTPVHWLAAHGAADLLGACLA-KGAEVD 143
                 79*******************.9**998 PP

  == domain 4  score: 9.0 bits;  conditional E-value: 0.00068
       Ank_3   2 GetpLhlAarsgnleivkfLlenkga 27 
                 ++tpLhlA++ g l  +  Ll+  +a
  KOO25175.1 149 QQTPLHLALMRGELVCCFVLLD-ANA 173
                 69***********965666666.444 PP

  == domain 5  score: -0.6 bits;  conditional E-value: 0.9
       Ank_3   3 etpLhlAa 10 
                 +t++hlA+
  KOO25175.1 183 RTAMHLAM 190
                 8******8 PP

  == domain 6  score: 14.6 bits;  conditional E-value: 1e-05
       Ank_3   2 GetpLhlAarsgnleivkfLlenkgadvn 30 
                  +tpLh+A   + l+ vk+Ll   ga+v+
  KOO25175.1 224 KRTPLHWASGKNALPCVKALLS-SGAEVD 251
                 69********************.899987 PP

  == domain 7  score: 10.7 bits;  conditional E-value: 0.00019
       Ank_3   2 GetpLhlAarsgnleivkfLlenkgadvn 30 
                 ++tpLh+A++ +  e +++Ll+   ad++
  KOO25175.1 257 QRTPLHWAVLVDAAESAEALLQ-SKADLR 284
                 69************99******.899986 PP

  == domain 8  score: 10.4 bits;  conditional E-value: 0.00023
       Ank_3   2 GetpLhlAarsgnleivkfLlen 24 
                  +tpLh+A+  +    +k+Ll +
  KOO25175.1 290 KRTPLHWACDRAAEGCCKLLLGH 312
                 69*********999879999874 PP

  == domain 9  score: 15.0 bits;  conditional E-value: 7.3e-06
       Ank_3   2 GetpLhlAarsgnleivkfLlenkgad 28 
                 G+t+Lh+Aar g +  vk Ll   ga+
  KOO25175.1 327 GYTALHYAARRGATGCVKSLLA-LGAN 352
                 9*************88*****9.9987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (497 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       412  (0.0229795); expected 358.6 (0.02)
Passed bias filter:                      339  (0.0189079); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.53u 0.23s 00:00:00.76 Elapsed: 00:00:00.38
# Mc/sec: 3893.62
//
Query:       KOO25176.1  [L=743]
Description: hypothetical protein Ctob_001755 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      8e-05   23.1   2.3     0.0047   17.4   0.0    2.5  2  DUF4231   Protein of unknown function (DUF4231)
    0.00071   19.5   8.1    0.00071   19.5   8.1    3.3  4  SLATT_1   SMODS and SLOG-associating 2TM effector domain 1


Domain annotation for each model (and alignments):
>> DUF4231  Protein of unknown function (DUF4231)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.4   0.0   5.3e-07    0.0047       4      99 ..     348     467 ..     346     472 .. 0.94
   2 !    4.1   1.2    0.0072        65      27      91 ..     611     693 ..     596     698 .. 0.53

  Alignments for each domain:
  == domain 1  score: 17.4 bits;  conditional E-value: 5.3e-07
     DUF4231   4 swyekkasrakrrfrllrlitivlgallpilvs........................sklgagvsvlkiltallsalvailaaleeffrykerWrryRs 78 
                 ++y ++++++ r  ++l  ++i +g l++i+++                         k   + +vl ++ a l +l+a++ ++e++++  e   +  +
  KOO25176.1 348 DKYVSTSRSYSRPNYILTNLSIAIGLLSTIVAVvagefindkkripvpwkrqlfagdHKALEVDDVLLFVCASLPVLLAVVDSIEGLMNTAEATAAVER 446
                 678889999999999999999999999999999999********************988889999********************************** PP

     DUF4231  79 taEsLktekwlflakagpYsd 99 
                 +a  + +  +l+ ++ag Ysd
  KOO25176.1 447 AAGLVTQSIYLYRCRAGDYSD 467
                 *******************98 PP

  == domain 2  score: 4.1 bits;  conditional E-value: 0.0072
     DUF4231  27 lgallpilvs..................sklgagvsvlkiltallsalvailaaleeffrykerWrryRstaEsLktekwlfl 91 
                 l+ +++++++                  +   +++ v + ++a+  a+ + l+ + ++ r + + r++ ++a +L + +++++
  KOO25176.1 611 LARVSSFAAAavgtaiavaaftsteerwEAILDPGGVSPSAVAITVAVMTALSRMLQTTRIEAQRRAHTRAASALNAARVRWE 693
                 44444444333444444556678996553334444444444455444444455555555666666666666666666666665 PP

>> SLATT_1  SMODS and SLOG-associating 2TM effector domain 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.0      0.14   1.2e+03      13      45 ..     350     382 ..     344     387 .. 0.81
   2 ?   -2.5   0.1      0.53   4.8e+03      29      66 ..     413     450 ..     402     471 .. 0.57
   3 ?   -3.8   0.0       1.3   1.1e+04      84     109 ..     480     504 ..     472     509 .. 0.71
   4 !   19.5   8.1   7.9e-08   0.00071      52     116 ..     647     718 ..     601     721 .. 0.84

  Alignments for each domain:
  == domain 1  score: -0.7 bits;  conditional E-value: 0.14
     SLATT_1  13 Yrkkaeeneraakrwrlllillellalllaalr 45 
                 Y + +++++r + +++ l i+++ll++++a++ 
  KOO25176.1 350 YVSTSRSYSRPNYILTNLSIAIGLLSTIVAVVA 382
                 777888888888999999999999999999876 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 0.53
     SLATT_1  29 lllillellalllaalrafgelsvdlvgvlaavaaall 66 
                 +ll+++  l +lla++  ++ l   + +++a+  aa+l
  KOO25176.1 413 VLLFVCASLPVLLAVVDSIEGLMNTAEATAAVERAAGL 450
                 66777777777888887444444423333333344444 PP

  == domain 3  score: -3.8 bits;  conditional E-value: 1.3
     SLATT_1  84 aaeeLeiiraaleaeateeewaklVa 109
                 + ++L+++r++l  +++ +++a++V+
  KOO25176.1 480 TSSDLSTLRQTLL-QQDLATIAQVVD 504
                 6778888888887.666666666665 PP

  == domain 4  score: 19.5 bits;  conditional E-value: 7.9e-08
     SLATT_1  52 v..dlvgvlaavaaallaWlelkqyeelaaaYslaaeeLeiiraalea.....eateeewaklVadaEeais 116
                 v  ++v++++av++al   l+++++e + +a+++aa+ L+  r ++ea     + +++e+++lV ++E+ai 
  KOO25176.1 647 VspSAVAITVAVMTALSRMLQTTRIEAQRRAHTRAASALNAARVRWEAlpseeRGRQAELDRLVLSVEQAIE 718
                 2347899*****************************************9999889999************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (743 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       583  (0.0325172); expected 358.6 (0.02)
Passed bias filter:                      405  (0.0225891); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.65u 0.30s 00:00:00.95 Elapsed: 00:00:00.48
# Mc/sec: 4699.32
//
Query:       KOO25177.1  [L=454]
Description: hypothetical protein Ctob_001754 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.1e-18   66.9   1.0      4e-18   66.0   1.0    1.4  1  DENN      DENN (AEX-3) domain
    2.5e-09   37.0   0.0    3.7e-09   36.4   0.0    1.3  1  GRAM      GRAM domain
     0.0064   16.0   0.0     0.0093   15.5   0.0    1.1  1  DUF705    Protein of unknown function (DUF705)


Domain annotation for each model (and alignments):
>> DENN  DENN (AEX-3) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.0   1.0   6.7e-22     4e-18      96     185 ..      73     167 ..      71     168 .. 0.88

  Alignments for each domain:
  == domain 1  score: 66.0 bits;  conditional E-value: 6.7e-22
        DENN  96 enilqlfeavLlErriillSeklarLtsvaealvallyPlkWqhiyiPvlpaslld.....vleaPtPfiiGvesslleleekpledvvlvDldk 185
                 +++l lf a+LlEr ++l+S+ +arL+ va alv+ l Pl++++++iP lpa+l       v ++PtPfiiG+e++l + +e     vv++Dld+
  KOO25177.1  73 DTVLILFLAALLERPLLLVSTLVARLMPVAAALVHTLSPLSYSGTFIPFLPANLHPepgtlVNCSPTPFIIGIERHLVAQLEPLAPHVVVFDLDD 167
                 6899**************************************************7444432559***************666666788889**96 PP

>> GRAM  GRAM domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.4   0.0   6.3e-13   3.7e-09       3     110 ..     322     444 ..     320     448 .. 0.93

  Alignments for each domain:
  == domain 1  score: 36.4 bits;  conditional E-value: 6.3e-13
                 HHHHS----TT--EEEEEEEEEESS..................SEEEEEEEEESSEEEEEE-STT---EEEEEGGGEEEEEE.....-TT-TT-EEEEE CS
        GRAM   3 frkkfkellpeEkllatykCyllrdg.................gpvqGrlyltnyrlcFrskplgsskkvvlpladikriek.stsaanllengiqvet 83 
                 f++ f+ +  +E l+  y C+l+  +                 g++qG+l +++ +lcF+   + s +   lpl  ++++e    +   l++n+i++  
  KOO25177.1 322 FQQRFE-VGVNETLIGVYPCALHAAApspthsglgspgprglhGLRQGVLHVSTRHLCFEAALFASAY-TKLPLGRVVSVEGcRDPLFHLIPNAIRINL 418
                 899999.99**************999*************************************88885.88999999999996779999********** PP

                 SS-..EEEEE--TTHHHHHHHHHHHHH CS
        GRAM  84 sskdlelaFagfvtrdeaiefieellk 110
                  + +  l Fa+f++rdea  ++ e ++
  KOO25177.1 419 DDGS-TLVFASFQHRDEALALLSECVR 444
                 ****.*************999887766 PP

>> DUF705  Protein of unknown function (DUF705)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.0   1.6e-06    0.0093     133     167 ..     157     192 ..     146     196 .. 0.85

  Alignments for each domain:
  == domain 1  score: 15.5 bits;  conditional E-value: 1.6e-06
      DUF705 133 ikhvvvfDlDs.tLitdeeevelRdhavydsLdelk 167
                  +hvvvfDlD+ tL +de  +elR  a   +L el+
  KOO25177.1 157 APHVVVFDLDDgTLAGDEALAELRALATAPALLELN 192
                 68*******755*************99999998886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (454 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       314  (0.0175135); expected 358.6 (0.02)
Passed bias filter:                      250  (0.0139439); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.47u 0.22s 00:00:00.69 Elapsed: 00:00:00.38
# Mc/sec: 3612.57
//
Query:       KOO25178.1  [L=325]
Description: conserved oligomeric golgi complex subunit 6 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.4e-43  147.8   0.2    4.2e-43  147.5   0.2    1.1  1  COG6      Conserved oligomeric complex COG6


Domain annotation for each model (and alignments):
>> COG6  Conserved oligomeric complex COG6
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  147.5   0.2   2.3e-47   4.2e-43       9     229 ..      32     261 ..      23     300 .. 0.94

  Alignments for each domain:
  == domain 1  score: 147.5 bits;  conditional E-value: 2.3e-47
        COG6   9 ytentaeaRrnLrsdiekellkineefleefqpvaeqLkriesdveklnelcdemkkklssakeetsdlleeaeeLkeekkklelkqkllkaflkkFtL 107
                   ent ++Rr L s ie + l   ++ l+ f++++++L++ +++   l+e+c +++k+l+ +++ t+ ll ++e+ ++e++++e + +l  af++ +tL
  KOO25178.1  32 LPENTVSSRRALLSRIEVRGLTLSHSLLSMFGELQTALDAADAEACCLAEACGSISKQLQDSRAATEMLLLQTERVRKELAATERRAELTVAFERAYTL 130
                 569************************************************************************************************ PP

        COG6 108 seeEeaaLtsgee.........vddeFFkaLakvkeIhedCkiLLatenqraGleimeqmskyleaayekLyrwvqkelkslnsednpeissllrkalr 197
                 +e+Ee++L+   +           + +  +L++v+eIh+++k LL   +qr+Gle+ ++m+ + e+    Lyrwv+++++ l  + + +  + lr+al+
  KOO25178.1 131 TEDEEELLNAPFDaqspfgpasELAPLLAVLQRVHEIHARAKALLLGPYQRLGLELTSSMAAHEERGLGLLYRWVHEQCRVLPLQASATSLRPLRQALE 229
                 *********988777899986655679************************************************************************ PP

        COG6 198 vLkerpvlFkecldevaeaRskalldeFisal 229
                 +L+++p+++++cl+ev+++R++ ll ++   l
  KOO25178.1 230 ALRHKPTMLSYCLNEVVRCRQQPLLAAWSASL 261
                 ***********************999887777 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (325 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       637  (0.035529); expected 358.6 (0.02)
Passed bias filter:                      416  (0.0232026); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.25s 00:00:00.74 Elapsed: 00:00:00.41
# Mc/sec: 2375.79
//
Query:       KOO25179.1  [L=352]
Description: hypothetical protein Ctob_001750 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (352 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       403  (0.0224776); expected 358.6 (0.02)
Passed bias filter:                      218  (0.0121591); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.44u 0.25s 00:00:00.69 Elapsed: 00:00:00.41
# Mc/sec: 2553.33
//
Query:       KOO25180.1  [L=433]
Description: beach domain-containing protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      2e-91  306.2   0.0    2.5e-91  305.9   0.0    1.1  1  Beach     Beige/BEACH domain
    1.4e-06   28.3   0.1    8.3e-06   25.8   0.0    2.3  2  PH_BEACH  PH domain associated with Beige/BEACH


Domain annotation for each model (and alignments):
>> Beach  Beige/BEACH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  305.9   0.0   2.8e-95   2.5e-91       1     276 []     114     389 ..     114     389 .. 0.93

  Alignments for each domain:
  == domain 1  score: 305.9 bits;  conditional E-value: 2.8e-95
       Beach   1 ekWqkgeisnfeYLmalNtlagRsfndlsqYpvfPwvlkdyeseeldledektyRdLskpigalneerleklkeryeelee....eepkflygshyssa 95 
                 ekW+ gei n++YL++lN +a+Rsf dlsqYp++Pwvl+dy+s+ ldl+d++ yR L kp+gal+e+rl+  +++ +el+      +++ ly +hyss+
  KOO25180.1 114 EKWHAGEIDNYTYLLHLNDCASRSFDDLSQYPIMPWVLSDYSSDALDLNDPRRYRPLWKPVGALDESRLAATHRQRHELQVdaeaGQTTPLYRTHYSSP 212
                 69******************************************************************9999999998433345588889********* PP

       Beach  96 aivlyylvRlePftelalelqsgkfdvadrlfksieeawesvt..esesdvkEliPeffylpefllnsnnldlglkqeekvddVeLPpwakkspeeFvr 192
                 a+v yyl+R+ P  el ++++sgkfd++ r f s++++w++v+   ++ dvkEliP+f+  p fl+n+ +  + l     +++V LPpwa +s++eFvr
  KOO25180.1 213 AYVAYYLLRIFP--ELTFHINSGKFDKEARSFLSVDRTWQNVSerAHSGDVKELIPQFYSEPTFLTNEMGD-AAL--PPGCKNVGLPPWACGSSTEFVR 306
                 ************..77777788*********************644789******************9884.442..3579****************** PP

       Beach 193 ihreaLeseyvsenLheWIDliFGykqrgeeavkaknvfhpltyegevdlekiedeeekkaieaqikefGqtPkqlfkkphpkr 276
                 ++r+aLes++vs++Lh WIDliFG kq+g  a ka+n+f+ +tye+++d +k++d + ++ i+a ++ fGqtP qlf + hp+r
  KOO25180.1 307 QMRAALESDFVSAHLHLWIDLIFGSKQQGAPALKANNLFESYTYESALDSNKLDD-AARELIRACATDFGQTPPQLFAQAHPPR 389
                 *********************************************9999999887.57789*********************97 PP

>> PH_BEACH  PH domain associated with Beige/BEACH
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.8   0.0   9.2e-10   8.3e-06      37      99 ..      23      95 ..      10      96 .. 0.75
   2 ?   -2.9   0.0      0.81   7.3e+03      69      76 ..     425     432 ..     409     433 .] 0.76

  Alignments for each domain:
  == domain 1  score: 25.8 bits;  conditional E-value: 9.2e-10
    PH_BEACH 37 eeseltadkkkkdkewklseikevhlrrYlLrktAlEiFladrt..........sllfnFeskkerrkvlkal 99
                ++++  ad++ +  +w+l+ ++ v +rr  Lr+tAlE+ +a +           s+ ++F+s++er++v++ l
  KOO25180.1 23 KDASDGADSSGTLEQWPLAALTSVRRRRHELRHTALELLMAASHsghqaggaqgSVVLEFHSHEEREQVVRTL 95
                55666778888999**************************875422222222226778888888888877766 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 0.81
    PH_BEACH  69 ktAlEiFl 76 
                  +A+E+F+
  KOO25180.1 425 ANAVEFFF 432
                 58999998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (433 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       294  (0.016398); expected 358.6 (0.02)
Passed bias filter:                      255  (0.0142228); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.47u 0.24s 00:00:00.71 Elapsed: 00:00:00.39
# Mc/sec: 3304.31
//
Query:       KOO25181.1  [L=385]
Description: flavoprotein involved in k+ transport [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (385 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       372  (0.0207485); expected 358.6 (0.02)
Passed bias filter:                      300  (0.0167327); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.44u 0.28s 00:00:00.72 Elapsed: 00:00:00.41
# Mc/sec: 2807.70
//
Query:       KOO25182.1  [L=312]
Description: hypothetical protein Ctob_010705 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.4e-26   92.7   0.0    2.9e-26   92.4   0.0    1.1  1  Pkinase          Protein kinase domain
    3.3e-12   46.2   0.0    7.4e-12   45.1   0.0    1.5  1  Pkinase_Tyr      Protein tyrosine kinase
    1.9e-08   33.5   0.1    2.4e-08   33.2   0.1    1.1  1  Pkinase_fungal   Fungal protein kinase
      0.007   16.3   0.0      0.012   15.5   0.0    1.4  1  APH              Phosphotransferase enzyme family
  ------ inclusion threshold ------
      0.047   12.7   0.6      0.075   12.0   0.6    1.2  1  Pox_ser-thr_kin  Poxvirus serine/threonine protein kinase


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   92.4   0.0     8e-30   2.9e-26       1     209 [.       9     218 ..       9     256 .. 0.86

  Alignments for each domain:
  == domain 1  score: 92.4 bits;  conditional E-value: 8e-30
                 EEEEEEEEEESSEEEEEEEETTTTEEEEEEEEECHCHCHHHHHHHHHHHHHHHHHS.CTTB--EEEEEEESSEEEEEEE--TTEBHHHHHHHHSS--HH CS
     Pkinase   1 yekleklGeGsfGkVykaveketgkivAvKkikkekakkkkekkvlrEikilkklk.hpnivrlyevfeekdelylvleyveggeladllerkgslsee 98 
                 y+  +k+G+GsfG +y +++ +tg++vA+K     ++k+k+  ++l E k+ k l     i  + ++  e d+ ++vl+++   +l+dl      ++ +
  KOO25182.1   9 YRLGRKIGSGSFGDIYLGTHISTGEEVAIKLE---SIKSKH-PQLLYESKLYKILGgGVGIPSVRSFTVEGDYNVMVLDLLGP-SLEDLK-----FNLK 97 
                 67789************************964...444444.4899**********999*********************984.477776.....99** PP

                 HHHHHHHHHHHHHHHHHHTTEE-SS-SGGGEEEE..TTTE..EEE-SGTTSEESSSSCS........BCTTTSCGGGS-HHHHTTSCBSHHHHHHHHHH CS
     Pkinase  99 eakkiakqilegleylHskgiiHrDlKpeNiLid..ekge..lKitDFGlakelesssk........ltsfvgtseYlAPEvlkeneyskkvDvWslGv 185
                 ++  ia q+l  +ey+H+k+++HrD+Kp+N+Li   +k    +  +DFGlak+++  ++         ++ +gt +Y +     + e s+  D+ +lG 
  KOO25182.1  98 TILMIADQMLLRIEYIHHKSFLHRDIKPDNFLIGlgRK-AnlIHCIDFGLAKKYRDPKThqhipyreNKNLTGTARYASINTHLGIEQSRRDDLEALGY 195
                 *********************************96433.258*************999999*****99***********9988899999********** PP

                 HHHHHHHSS-STTTSSHHHHHHHH CS
     Pkinase 186 ilyelltgkppfsgekgkekveke 209
                 il+ +l g+ p++g k  +k +++
  KOO25182.1 196 ILMYFLRGSLPWQGLKAATK-KQK 218
                 *************6655442.222 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.1   0.0   2.1e-15   7.4e-12       2     257 ..      10     265 ..       9     267 .. 0.79

  Alignments for each domain:
  == domain 1  score: 45.1 bits;  conditional E-value: 2.1e-15
                  EEEEEEEEESSEEEEEEEEETTTTSSEEEEEEEEESTTSSHHHHHHHHHHHHHHHTS.-BTTB--EEEEEESSSSEEEEEE--TTEBHHHHHHHTCTT CS
  Pkinase_Tyr   2 elgkklGeGafGkVvegtlkgekekkevkVavKtlkeeateeekeelleeakimkkl.khpnivkllgvctkeepllivteyvkgGdLlkfLrkkeke 98 
                  +lg+k+G+G+fG+++ gt      ++ ++Va+K  +    ++++ +ll e k+ k l     i ++  + ++++  ++v++++        L++    
   KOO25182.1  10 RLGRKIGSGSFGDIYLGTHI----STGEEVAIKLESI---KSKHPQLLYESKLYKILgGGVGIPSVRSFTVEGDYNVMVLDLLG-----PSLEDL--- 92 
                  5789**************99....8999*****9744...444679***********99999************9999999864.....345554... PP

                  TSBHHHHHHHHHHHHHHHHHHHHTTEEEST-SGGGEEEE...ETTEEEE-STTTHEETTTSSEE.....EETTSSTSGGGGS-HHHHHHSEEEHHHHH CS
  Pkinase_Tyr  99 kltlkdllsfalqvAkGmeyLeskklvHrdlaarNvLls...enkvvkisDfGLardiekddey.....vkkeeaklpvkWmapEslkekkftsksDv 188
                  k++lk++l +a q+   +ey+++k+++Hrd+   N L+    + +++   DfGLa++  + ++      +++++ +   ++ ++ +    + + + D 
   KOO25182.1  93 KFNLKTILMIADQMLLRIEYIHHKSFLHRDIKPDNFLIGlgrKANLIHCIDFGLAKKYRDPKTHqhipyRENKNLTGTARYASINTHLGIEQSRRDDL 190
                  7889**********************************83335889999*******994433323344478888889999999999999999999999 PP

                  HHHHHHHHHHHTTSSGTTTTS...HHHHHHHHH.HTTEES-BBTTS...BHHHHHHHHHHT-SSGGGS--HHHHHH CS
  Pkinase_Tyr 189 WsfGvllwEiftlgespypgl...kneevlekl.kegkrlekpekc...peelyelmkkcweedpeeRptfselve 257
                   + G +l+  +  g+ p++gl   ++++ ++++ +++   +  e c   p+e++  +  c + + ++ p++s l++
   KOO25182.1 191 EALGYILMYFLR-GSLPWQGLkaaTKKQKYDMIsEKKSSTPVEELCrsyPAEFAMYLGYCRSLEFADKPDYSYLRK 265
                  999988887666.999998883324455666773334444444444222667777888888888888888877765 PP

>> Pkinase_fungal  Fungal protein kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.2   0.1   6.6e-12   2.4e-08     323     407 ..     113     200 ..      65     201 .. 0.81

  Alignments for each domain:
  == domain 1  score: 33.2 bits;  conditional E-value: 6.6e-12
  Pkinase_fungal 323 flkagiLHrDiSenNilitdskkegerkglLiDLDlakelsddsses.....garertGTleFmaievlkgeeHsyrhDLESffyvllwi 407
                      +++ +LHrDi  +N li      + +    iD+ lak++ d+++++     ++++ tGT+ + +i+   g+e s r+DLE + y+l++ 
      KOO25182.1 113 IHHKSFLHRDIKPDNFLIG--LGRKANLIHCIDFGLAKKYRDPKTHQhipyrENKNLTGTARYASINTHLGIEQSRRDDLEALGYILMYF 200
                     44899**************..34445666779**********99999666665599*******************************985 PP

>> APH  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.0   3.5e-06     0.012     165     197 ..     115     148 ..      82     150 .. 0.87

  Alignments for each domain:
  == domain 1  score: 15.5 bits;  conditional E-value: 3.5e-06
                 -EEEE-SS-SGGGEEEC...TTEEEEE---TT-E CS
         APH 165 ptvllHgDlhpgNllvd.pddgrvtGviDfedag 197
                 ++++lH+D++p+N+l+   ++  ++ +iDf++a+
  KOO25182.1 115 HKSFLHRDIKPDNFLIGlGRKANLIHCIDFGLAK 148
                 689***************77777789*****996 PP

>> Pox_ser-thr_kin  Poxvirus serine/threonine protein kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.6   2.1e-05     0.075     281     312 ..     100     130 ..      90     144 .. 0.76

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 2.1e-05
  Pox_ser-thr_kin 281 fLqiaLLyikiyelpdcenflhvDlkPdniLi 312
                      ++    ++++i e    + flh D+kPdn Li
       KOO25182.1 100 LMIADQMLLRI-EYIHHKSFLHRDIKPDNFLI 130
                      44333567777.778899*************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (312 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       367  (0.0204696); expected 358.6 (0.02)
Passed bias filter:                      345  (0.0192426); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.47u 0.26s 00:00:00.73 Elapsed: 00:00:00.42
# Mc/sec: 2213.14
//
Query:       KOO25183.1  [L=425]
Description: serine threonine-protein phosphatase 6 regulatory ankyrin repeat subunit b [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.6e-41  140.7  19.9    1.3e-12   48.2   1.3    5.0  5  Ank_2          Ankyrin repeats (3 copies)
    8.8e-30  102.7  16.2    2.3e-09   37.6   0.4    6.4  6  Ank_4          Ankyrin repeats (many copies)
    9.4e-29   99.1  31.3    4.8e-09   36.3   0.4    7.8  8  Ank_5          Ankyrin repeats (many copies)
    6.1e-27   92.9  40.5     0.0012   19.2   0.2    8.9  9  Ank            Ankyrin repeat
    2.5e-17   61.2  25.6      0.016   15.7   0.2    9.2  9  Ank_3          Ankyrin repeat
  ------ inclusion threshold ------
       0.02   14.7   0.8      0.047   13.4   0.8    1.6  1  DUF4637        Domain of unknown function (DUF4637)
        2.3    9.3   5.6         18    6.4   0.2    4.3  4  Mak_N_cap      Maltokinase N-terminal cap domain
          8    5.2   7.5         11    4.8   7.5    1.1  1  XRCC4          DNA double-strand break repair and V(D)J recom


Domain annotation for each model (and alignments):
>> Ank_2  Ankyrin repeats (3 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.7   0.1   6.3e-05      0.14      45      81 ..       8      46 ..       5      48 .. 0.81
   2 !   48.2   1.3   5.6e-16   1.3e-12       1      76 [.      22     108 ..      22     115 .. 0.85
   3 !   40.7   1.7   1.2e-13   2.7e-10      25      82 ..     117     181 ..     107     182 .. 0.86
   4 !   39.3   0.5   3.2e-13   7.2e-10      25      82 ..     184     247 ..     177     248 .. 0.83
   5 !   23.7   0.0   2.4e-08   5.3e-05      22      77 ..     249     308 ..     245     314 .. 0.84

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 6.3e-05
       Ank_2 45 Lleh.ad.ndgrtpLhyAarsghleivklLlekgadinl 81
                Ll h a  ++   +Lh+Aa+ g   +v+lL+  +ad+n+
  KOO25183.1  8 LLRHqAApDTLDAALHAAAFTGDVVCVQLLVAANADVNA 46
                6777633467779******99**********88999996 PP

  == domain 2  score: 48.2 bits;  conditional E-value: 5.6e-16
       Ank_2   1 LhlAakngnlelvklLl.egadpn..k..ngktaLhyAakngnleivklLleh......adndgrtpLhyAarsghleivklLlekg 76 
                 Lh Aa  g+  +v+lL+ ++ad+n  +     ++L +Aa  g+ +++++Ll        ad++g t+Lh+A++ g+ e+vklLl   
  KOO25183.1  22 LHAAAFTGDVVCVQLLVaANADVNalEpvGRASPLCVAAALGHADVISTLLTLgasldrADSSGATVLHAACSTGSHECVKLLLAAH 108
                 78899999888999999999***987367779*******************84456677889**********99999*******543 PP

  == domain 3  score: 40.7 bits;  conditional E-value: 1.2e-13
       Ank_2  25 ngktaLhyAakngnleivklLle..h.....adndgrtpLhyAarsghleivklLlekgadinlk 82 
                  g+t+L +A+k g+  +v+lLl+  +     ad +g tpL +A+ +gh  +v+ Ll+  ad++l 
  KOO25183.1 117 MGMTPLAAACKVGDAACVRLLLAvsNaavnlADAHGATPLAIACTHGHDACVECLLDAHADVDLA 181
                 589*******************8552676677799*********************989999876 PP

  == domain 4  score: 39.3 bits;  conditional E-value: 3.2e-13
       Ank_2  25 ngktaLhyAakngnleivklLleh......adndgrtpLhyAarsghleivklLlekgadinlk 82 
                  g  +L +Aa  g+  +v+lLl+        d + +t+Lh+A++ g+l +v+lLl++ga+++l 
  KOO25183.1 184 LGTAPLCLAAALGHASCVQLLLARdasvnlSDGSQTTALHAACETGQLGCVRLLLNCGASLELA 247
                 6889******************96667444446678*******************99*998765 PP

  == domain 5  score: 23.7 bits;  conditional E-value: 2.4e-08
       Ank_2  22 pnkngktaLhyAakngnleivklLleh......adndgrtpLhyAarsghleivklLlekga 77 
                 +   g+taL +A  +g++e+v+lLl         d+dg ++   A+r+gh+ +v +L e  a
  KOO25183.1 249 V--RGRTALLLASAHGQRECVQLLLRRrallgaRDRDGVSASLSASRNGHSAVVAVLEEARA 308
                 4..49********************9667888666***************999998855455 PP

>> Ank_4  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.4   0.0    0.0015       3.4       4      30 ..      21      47 ..      17      51 .. 0.81
   2 !   33.1   0.1   2.7e-11     6e-08       3      55 .]      54     105 ..      52     105 .. 0.96
   3 !   14.0   0.6   2.5e-05     0.057       1      55 []     118     172 ..     118     175 .. 0.89
   4 !   37.6   0.4     1e-12   2.3e-09       3      55 .]     187     238 ..     185     238 .. 0.96
   5 !   19.3   0.1   5.5e-07    0.0012      16      55 .]     233     271 ..     232     271 .. 0.90
   6 !   15.0   0.1   1.3e-05     0.029       2      54 ..     252     303 ..     251     304 .. 0.87

  Alignments for each domain:
  == domain 1  score: 8.4 bits;  conditional E-value: 0.0015
       Ank_4  4 aLhyaaisgrlelvrlLlekgadinaq 30
                aLh+aa  g++ +v+lL++ +ad+na 
  KOO25183.1 21 ALHAAAFTGDVVCVQLLVAANADVNAL 47
                688888888888888888888888876 PP

  == domain 2  score: 33.1 bits;  conditional E-value: 2.7e-11
       Ank_4   3 taLhyaaisgrlelvrlLlekgadinaqdnrsGetalhiAakrgnveilklLl 55 
                 ++L  aa+ g+ +++  Ll  ga++++  ++sG t lh A+++g+ e++klLl
  KOO25183.1  54 SPLCVAAALGHADVISTLLTLGASLDRA-DSSGATVLHAACSTGSHECVKLLL 105
                 799****************99******8.***********************8 PP

  == domain 3  score: 14.0 bits;  conditional E-value: 2.5e-05
       Ank_4   1 eltaLhyaaisgrlelvrlLle.kgadinaqdnrsGetalhiAakrgnveilklLl 55 
                 ++t+L +a++ g+  +vrlLl+ ++a +n   ++ G t+l iA+ +g+  +++ Ll
  KOO25183.1 118 GMTPLAAACKVGDAACVRLLLAvSNAAVNLA-DAHGATPLAIACTHGHDACVECLL 172
                 58999999999999*******8567889997.****************88887776 PP

  == domain 4  score: 37.6 bits;  conditional E-value: 1e-12
       Ank_4   3 taLhyaaisgrlelvrlLlekgadinaqdnrsGetalhiAakrgnveilklLl 55 
                  +L  aa+ g+  +v+lLl+++a++n + ++s+ talh A+ +g++ +++lLl
  KOO25183.1 187 APLCLAAALGHASCVQLLLARDASVNLS-DGSQTTALHAACETGQLGCVRLLL 238
                 68999**********************9.***********************8 PP

  == domain 5  score: 19.3 bits;  conditional E-value: 5.5e-07
       Ank_4  16 lvrlLlekgadinaqdnrsGetalhiAakrgnveilklLl 55 
                 +vrlLl+ ga++    + +G+tal  A  +g+ e+++lLl
  KOO25183.1 233 CVRLLLNCGASLELA-DVRGRTALLLASAHGQRECVQLLL 271
                 799***879997775.999********************8 PP

  == domain 6  score: 15.0 bits;  conditional E-value: 1.3e-05
       Ank_4   2 ltaLhyaaisgrlelvrlLlekgadinaqdnrsGetalhiAakrgnveilklL 54 
                 +taL  a ++g+ e+v+lLl ++a + a+ +r+G +a   A ++g+  ++  L
  KOO25183.1 252 RTALLLASAHGQRECVQLLLRRRALLGAR-DRDGVSASLSASRNGHSAVVAVL 303
                 78999999999999999999889999999.99999999999999998888665 PP

>> Ank_5  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.6   1.5    0.0011       2.4       1      49 [.       8      51 ..       8      59 .. 0.87
   2 !    8.5   0.1    0.0012       2.6      16      49 ..      52      85 ..      47      85 .. 0.89
   3 !   21.4   0.1     1e-07   0.00023       1      46 [.      71     115 ..      71     118 .. 0.89
   4 !   26.2   1.6   3.2e-09   7.1e-06       9      56 .]     111     159 ..     106     159 .. 0.93
   5 !   19.5   0.8     4e-07    0.0009       7      53 ..     143     189 ..     140     189 .. 0.92
   6 !   25.0   0.5   7.7e-09   1.7e-05       1      47 [.     171     216 ..     171     219 .. 0.94
   7 !   36.3   0.4   2.1e-12   4.8e-09       1      56 []     204     258 ..     204     258 .. 0.97
   8 !   17.7   0.2   1.5e-06    0.0033       4      50 ..     240     286 ..     239     290 .. 0.88

  Alignments for each domain:
  == domain 1  score: 8.6 bits;  conditional E-value: 0.0011
       Ank_5  1 LlehgpadvnrldgggntpLhvAakygaadvvrlLlargadlnltdsrG 49
                Ll+h+ a++++ld     +Lh Aa  g   +v+lL+a +ad n+ +  G
  KOO25183.1  8 LLRHQ-AAPDTLD----AALHAAAFTGDVVCVQLLVAANADVNALEPVG 51
                78887.9999999....9*************************988655 PP

  == domain 2  score: 8.5 bits;  conditional E-value: 0.0012
       Ank_5 16 gntpLhvAakygaadvvrlLlargadlnltdsrG 49
                + +pL+vAa  g+adv+  Ll  ga+l+  ds+G
  KOO25183.1 52 RASPLCVAAALGHADVISTLLTLGASLDRADSSG 85
                568******************9999999888876 PP

  == domain 3  score: 21.4 bits;  conditional E-value: 1e-07
       Ank_5   1 LlehgpadvnrldgggntpLhvAakygaadvvrlLlargadlnltd 46 
                 Ll  g a+++r d  g t+Lh A++ g+ ++v+lLla +a+ ++td
  KOO25183.1  71 LLTLG-ASLDRADSSGATVLHAACSTGSHECVKLLLAAHASGMATD 115
                 67778.99****************************8888877776 PP

  == domain 4  score: 26.2 bits;  conditional E-value: 3.2e-09
       Ank_5   9 vnrldgggntpLhvAakygaadvvrlLl.argadlnltdsrGltaldlA 56 
                   ++d  g+tpL  A+k g a +vrlLl   +a+ nl d++G t+l +A
  KOO25183.1 111 GMATDLMGMTPLAAACKVGDAACVRLLLaVSNAAVNLADAHGATPLAIA 159
                 5678999***************************************998 PP

  == domain 5  score: 19.5 bits;  conditional E-value: 4e-07
       Ank_5   7 advnrldgggntpLhvAakygaadvvrlLlargadlnltdsrGltal 53 
                 a+vn  d +g tpL +A+ +g+  +v+ Ll+ +ad +l d+ G  +l
  KOO25183.1 143 AAVNLADAHGATPLAIACTHGHDACVECLLDAHADVDLADELGTAPL 189
                 78999999********************************9987775 PP

  == domain 6  score: 25.0 bits;  conditional E-value: 7.7e-09
       Ank_5   1 LlehgpadvnrldgggntpLhvAakygaadvvrlLlargadlnltds 47 
                 Ll++  adv+  d+ g+ pL++Aa  g+a++v+lLlar a+ nl d+
  KOO25183.1 171 LLDAH-ADVDLADELGTAPLCLAAALGHASCVQLLLARDASVNLSDG 216
                 78887.**************************************997 PP

  == domain 7  score: 36.3 bits;  conditional E-value: 2.1e-12
       Ank_5   1 LlehgpadvnrldgggntpLhvAakygaadvvrlLlargadlnltdsrGltaldlA 56 
                 Ll+++ a+vn +dg  +t+Lh A++ g + +vrlLl+ ga+l l d rG+tal lA
  KOO25183.1 204 LLARD-ASVNLSDGSQTTALHAACETGQLGCVRLLLNCGASLELADVRGRTALLLA 258
                 78998.***********************************************887 PP

  == domain 8  score: 17.7 bits;  conditional E-value: 1.5e-06
       Ank_5   4 hgpadvnrldgggntpLhvAakygaadvvrlLlargadlnltdsrG.l 50 
                 +g a++   d +g t+L +A+ +g  ++v+lLl r+a l+++d +G +
  KOO25183.1 240 CG-ASLELADVRGRTALLLASAHGQRECVQLLLRRRALLGARDRDGvS 286
                 55.77778888999******************************9944 PP

>> Ank  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.4   0.4   7.6e-05      0.17       5      30 ..      21      47 ..      19      48 .. 0.90
   2 !   11.2   0.4   0.00018       0.4       4      31 ..      54      82 ..      53      83 .. 0.86
   3 !   18.5   0.5     9e-07     0.002       2      23 ..      85     108 ..      84     116 .. 0.83
   4 !   14.4   0.3   1.7e-05     0.038       1      31 [.     117     149 ..     117     150 .. 0.85
   5 !   14.4   1.1   1.8e-05     0.041       1      31 [.     151     182 ..     151     183 .. 0.88
   6 !   13.7   0.7     3e-05     0.067       5      31 ..     188     215 ..     185     215 .. 0.87
   7 !   19.2   0.2   5.4e-07    0.0012       4      31 ..     220     248 ..     218     249 .. 0.83
   8 !   13.5   0.0   3.5e-05     0.078       2      31 ..     251     281 ..     250     282 .. 0.85
   9 ?   -1.3   0.0       1.6   3.6e+03       2      21 ..     284     303 ..     283     305 .. 0.74

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 7.6e-05
                HHHHHHHHTTHHHHHHHH.TTTSTTCB CS
         Ank  5 PLHlAatngkkriiklLL.hGAnlnal 30
                +LH Aa  g++ +++lL+   A++nal
  KOO25183.1 21 ALHAAAFTGDVVCVQLLVaANADVNAL 47
                8*****889999******778****96 PP

  == domain 2  score: 11.2 bits;  conditional E-value: 0.00018
                BHHHHHHHHTTHHHHHHHH.TTTSTTCBT CS
         Ank  4 TPLHlAatngkkriiklLL.hGAnlnald 31
                +PL +Aa  g++++i+ LL  GA+l+  d
  KOO25183.1 54 SPLCVAAALGHADVISTLLtLGASLDRAD 82
                699999999*********955***98766 PP

  == domain 3  score: 18.5 bits;  conditional E-value: 9e-07
                 SBBHHHHHHHHTTHHHHHHHH..T CS
         Ank   2 GnTPLHlAatngkkriiklLL..h 23 
                 G T+LH A++ g+++++klLL  h
  KOO25183.1  85 GATVLHAACSTGSHECVKLLLaaH 108
                 78*******99**********744 PP

  == domain 4  score: 14.4 bits;  conditional E-value: 1.7e-05
                 TSBBHHHHHHHHTTHHHHHHHH..TTTSTTCBT CS
         Ank   1 dGnTPLHlAatngkkriiklLL..hGAnlnald 31 
                 +G+TPL  A+  g++ +++lLL  + A +n+ d
  KOO25183.1 117 MGMTPLAAACKVGDAACVRLLLavSNAAVNLAD 149
                 6*********99**********76566577665 PP

  == domain 5  score: 14.4 bits;  conditional E-value: 1.8e-05
                 TSBBHHHHHHHHTTHHHHHHHH.TTTSTTCBT CS
         Ank   1 dGnTPLHlAatngkkriiklLL.hGAnlnald 31 
                 +G TPL +A+t g+  +++ LL   A++++ d
  KOO25183.1 151 HGATPLAIACTHGHDACVECLLdAHADVDLAD 182
                 589*******************5469999866 PP

  == domain 6  score: 13.7 bits;  conditional E-value: 3e-05
                 HHHHHHHHTTHHHHHHHH.TTTSTTCBT CS
         Ank   5 PLHlAatngkkriiklLL.hGAnlnald 31 
                 PL lAa  g++++++lLL + A++n+ d
  KOO25183.1 188 PLCLAAALGHASCVQLLLaRDASVNLSD 215
                 999**99***********6679999866 PP

  == domain 7  score: 19.2 bits;  conditional E-value: 5.4e-07
                 BHHHHHHHHTTHHHHHHHH.TTTSTTCBT CS
         Ank   4 TPLHlAatngkkriiklLL.hGAnlnald 31 
                 T+LH A+  g++ +++lLL +GA+l + d
  KOO25183.1 220 TALHAACETGQLGCVRLLLnCGASLELAD 248
                 9******556666******99**997665 PP

  == domain 8  score: 13.5 bits;  conditional E-value: 3.5e-05
                 SBBHHHHHHHHTTHHHHHHHH.TTTSTTCBT CS
         Ank   2 GnTPLHlAatngkkriiklLL.hGAnlnald 31 
                 G+T+L lA+  g+ ++++lLL ++A l a+d
  KOO25183.1 251 GRTALLLASAHGQRECVQLLLrRRALLGARD 281
                 9********888899******6679777777 PP

  == domain 9  score: -1.3 bits;  conditional E-value: 1.6
                 SBBHHHHHHHHTTHHHHHHH CS
         Ank   2 GnTPLHlAatngkkriiklL 21 
                 G ++   A++ng+  ++  L
  KOO25183.1 284 GVSASLSASRNGHSAVVAVL 303
                 56666678899998888765 PP

>> Ank_3  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.7   0.1     0.012        27       5      31 .]      21      46 ..      19      46 .. 0.92
   2 ?    3.8   0.0     0.051   1.1e+02       4      30 ..      54      79 ..      52      80 .. 0.89
   3 !   13.4   0.1     4e-05     0.089       2      23 ..      85     106 ..      84     111 .. 0.90
   4 !    9.0   0.1    0.0011       2.4       2      30 ..     118     146 ..     117     147 .. 0.92
   5 !   15.7   0.2   7.2e-06     0.016       1      30 [.     151     179 ..     151     180 .. 0.93
   6 ?    3.6   0.2     0.059   1.3e+02       6      30 ..     189     212 ..     187     213 .. 0.87
   7 !   10.8   0.1   0.00028      0.63       4      29 ..     220     244 ..     219     246 .. 0.93
   8 !   10.7   0.1   0.00031      0.69       2      25 ..     251     273 ..     250     278 .. 0.91
   9 ?   -1.7   0.0       3.2   7.2e+03       6      21 ..     288     303 ..     283     307 .. 0.71

  Alignments for each domain:
  == domain 1  score: 5.7 bits;  conditional E-value: 0.012
       Ank_3  5 pLhlAarsgnleivkfLlenkgadvna 31
                +Lh Aa  g++  v++L+   +advna
  KOO25183.1 21 ALHAAAFTGDVVCVQLLVA-ANADVNA 46
                79*********88******.9****96 PP

  == domain 2  score: 3.8 bits;  conditional E-value: 0.051
       Ank_3  4 tpLhlAarsgnleivkfLlenkgadvn 30
                +pL +Aa  g+ +++  Ll   ga ++
  KOO25183.1 54 SPLCVAAALGHADVISTLLT-LGASLD 79
                78889***************.999875 PP

  == domain 3  score: 13.4 bits;  conditional E-value: 4e-05
       Ank_3   2 GetpLhlAarsgnleivkfLle 23 
                 G t Lh A++ g++e vk+Ll 
  KOO25183.1  85 GATVLHAACSTGSHECVKLLLA 106
                 89******************98 PP

  == domain 4  score: 9.0 bits;  conditional E-value: 0.0011
       Ank_3   2 GetpLhlAarsgnleivkfLlenkgadvn 30 
                 G+tpL  A++ g+ + v++Ll   +a vn
  KOO25183.1 118 GMTPLAAACKVGDAACVRLLLAVSNAAVN 146
                 99************99*****98888887 PP

  == domain 5  score: 15.7 bits;  conditional E-value: 7.2e-06
       Ank_3   1 nGetpLhlAarsgnleivkfLlenkgadvn 30 
                 +G tpL +A+ +g+ + v+ Ll+  +adv+
  KOO25183.1 151 HGATPLAIACTHGHDACVECLLD-AHADVD 179
                 799************99******.899987 PP

  == domain 6  score: 3.6 bits;  conditional E-value: 0.059
       Ank_3   6 LhlAarsgnleivkfLlenkgadvn 30 
                 L lAa  g+ + v++Ll  + a vn
  KOO25183.1 189 LCLAAALGHASCVQLLLA-RDASVN 212
                 55899999*999******.999998 PP

  == domain 7  score: 10.8 bits;  conditional E-value: 0.00028
       Ank_3   4 tpLhlAarsgnleivkfLlenkgadv 29 
                 t+Lh A++ g l  v++Ll+ +ga +
  KOO25183.1 220 TALHAACETGQLGCVRLLLN-CGASL 244
                 89**********88******.**986 PP

  == domain 8  score: 10.7 bits;  conditional E-value: 0.00031
       Ank_3   2 GetpLhlAarsgnleivkfLlenk 25 
                 G+t+L lA  +g  e v++Ll+ +
  KOO25183.1 251 GRTALLLASAHGQRECVQLLLR-R 273
                 9********************9.4 PP

  == domain 9  score: -1.7 bits;  conditional E-value: 3.2
       Ank_3   6 LhlAarsgnleivkfL 21 
                    A r+g+ ++v  L
  KOO25183.1 288 SLSASRNGHSAVVAVL 303
                 5669999999976555 PP

>> DUF4637  Domain of unknown function (DUF4637)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.8   2.1e-05     0.047      29      72 ..     307     350 ..     294     366 .. 0.77

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 2.1e-05
     DUF4637  29 edeeedraeeesaaegeeesreaeeaegrekgsvsysPlrqess 72 
                   e e+ a+ ++ a++++++r ++ea  re+++v+ sPlrq s 
  KOO25183.1 307 RAEMEEMADAATRAATHAAARRIHEAAERERRAVTRSPLRQLSP 350
                 34445567777888888999999******************874 PP

>> Mak_N_cap  Maltokinase N-terminal cap domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.0         2   4.5e+03      42      56 ..      25      41 ..       8      68 .. 0.64
   2 ?    0.8   0.1      0.48   1.1e+03      47      57 ..      99     109 ..      65     177 .. 0.58
   3 ?    1.1   0.1      0.36   8.2e+02      37      76 ..     190     231 ..     171     237 .. 0.59
   4 ?    6.4   0.2    0.0082        18      24      76 ..     244     294 ..     236     318 .. 0.70

  Alignments for each domain:
  == domain 1  score: -1.2 bits;  conditional E-value: 2
                EEETT..EEEEEEEEEC CS
   Mak_N_cap 42 veeag..dvYqvpLgyr 56
                ++ +g   + q+++++ 
  KOO25183.1 25 AAFTGdvVCVQLLVAAN 41
                33333346677777663 PP

  == domain 2  score: 0.8 bits;  conditional E-value: 0.48
                 EEEEEEEEECS CS
   Mak_N_cap  47 dvYqvpLgyre 57 
                 ++  ++L++++
  KOO25183.1  99 ECVKLLLAAHA 109
                 44444444432 PP

  == domain 3  score: 1.1 bits;  conditional E-value: 0.36
                 EEEEEEEETTEEEEEEEEECSS--..CCGHC.CEEEEE.EETT CS
   Mak_N_cap  37 hllvrveeagdvYqvpLgyreapp..eglep.aligtaehgpl 76 
                 +l  + ++a  + q++L+  ++    +g +  al +  e g+l
  KOO25183.1 190 CLAAALGHA-SCVQLLLARDASVNlsDGSQTtALHAACETGQL 231
                 233334555.9******98554333255555577776666666 PP

  == domain 4  score: 6.4 bits;  conditional E-value: 0.0082
                 EEC.......TEEEEEEEEEETTEEEEEEEEECSS--CCGHCCEEEEE.EETT CS
   Mak_N_cap  24 telddpagevglehllvrveeagdvYqvpLgyreappeglepaligtaehgpl 76 
                 +el+d +g+++l+++  + +++ ++ q++L  r+ + ++ ++ + ++++ ++ 
  KOO25183.1 244 LELADVRGRTALLLASAH-GQR-ECVQLLLRRRALLGARDRDGVSASLSASRN 294
                 566555555555544444.444.9*******9987777766666655555554 PP

>> XRCC4  DNA double-strand break repair and V(D)J recombination protein XRCC4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.8   7.5    0.0047        11     203     313 ..     299     411 ..     292     425 .] 0.64

  Alignments for each domain:
  == domain 1  score: 4.8 bits;  conditional E-value: 0.0047
       XRCC4 203 lkelqeseesteqkrekaaksdkasdeeedydgstdeeseeeakkp..sskaeasskddsllsseDitdvAPsRKrRqRlqkkleteakvatqeeekke 299
                 +  + e+++ + +++++aa+   ++++ ++  ++ + e  + +++p  + +++a+ ++ +  + +++ ++ P+R rR+R ++ +  +  v + +++k +
  KOO25183.1 299 VVAVLEEARAEMEEMADAATRAATHAAARRIHEAAERERRAVTRSPlrQLSPQAAARRIAEAAVREMRELSPRRERRYRDEHPAFVQGWVISPQKQKPQ 397
                 5555566666677778888888888888899999999999988855226678899999998899***************99987766554444333333 PP

       XRCC4 300 kekldssakkaskk 313
                  +++  +++ +++ 
  KOO25183.1 398 PKQPLRKRRVKQRA 411
                 32222222222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (425 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1133  (0.0631937); expected 358.6 (0.02)
Passed bias filter:                      508  (0.028334); expected 358.6 (0.02)
Passed Vit filter:                        50  (0.00278878); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.59u 0.26s 00:00:00.85 Elapsed: 00:00:00.41
# Mc/sec: 3091.35
//
Query:       KOO25184.1  [L=379]
Description: hypothetical protein Ctob_010704 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.011   15.0   1.0      0.022   14.0   1.0    1.5  1  DUF3623    Protein of unknown function (DUF3623)
      0.032   13.9   0.2      0.099   12.3   0.1    1.8  2  PGM_PMM_I  Phosphoglucomutase/phosphomannomutase, alpha/beta/


Domain annotation for each model (and alignments):
>> DUF3623  Protein of unknown function (DUF3623)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   1.0   2.5e-06     0.022     145     228 ..     180     262 ..     168     280 .. 0.84

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 2.5e-06
     DUF3623 145 wvmrlSaklnlflGvrnlneeflPehlryLksylrkrplnllFPlSvtlltvaavllveralaaeateaaavgltLlaallala 228
                   m+  a +   +G+r+ +++fl   +  L+++l + +   l P Sv ++t  ++l +  +la+  +++++ ++ ++ +l  la
  KOO25184.1 180 SAMQFHATMGCLFGLRRFSTQFLYVWIIQLNAFLMTIRRKNLAPHSVLVTTYGLMLTFGFVLAS-YEHHRVGAFLMINTLGNLA 262
                 568888999999******************************************9999999997.5555555566667777776 PP

>> PGM_PMM_I  Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.0      0.52   4.7e+03      18      46 ..     132     158 ..     128     162 .. 0.77
   2 ?   12.3   0.1   1.1e-05     0.099      45      86 ..     320     363 ..     293     370 .. 0.83

  Alignments for each domain:
  == domain 1  score: -2.8 bits;  conditional E-value: 0.52
                 BSCCHHHHHHHHHHHHCHHCSTS-EEEEE CS
   PGM_PMM_I  18 ltpelveklgqaiaeylkaeakkkkvvvG 46 
                 l+p++ ++++  +++ l+a+   ++ +vG
  KOO25184.1 132 LEPNYHLNIAIVLGTLLAAD--VGSAAVG 158
                 78999999999999999985..6666665 PP

  == domain 2  score: 12.3 bits;  conditional E-value: 1.1e-05
                 EEE-S-TTHHHHHHHHHHHHHCCT-CEEEEE..EB-HHHHHHHH CS
   PGM_PMM_I  45 vGrDtRvssrelaealaaglaanGvevillg..llptPavsfai 86 
                 v+rD R   + +ae++aa l+a+ + + ++g  + ptP +s+++
  KOO25184.1 320 VARDNRREAKAAAEEAAAELVAAKLAAANAGidVKPTPSCSASV 363
                 89**************************************9876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (379 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       623  (0.0347482); expected 358.6 (0.02)
Passed bias filter:                      372  (0.0207485); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.46u 0.23s 00:00:00.69 Elapsed: 00:00:00.38
# Mc/sec: 2997.49
//
Query:       KOO25185.1  [L=460]
Description: hypothetical protein Ctob_010357, partial [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.1e-36  126.7   0.0    1.6e-36  126.2   0.0    1.2  1  Sulfotransfer_1  Sulfotransferase domain
    1.9e-10   41.5   0.0      4e-06   27.4   0.0    2.4  2  Sulfotransfer_3  Sulfotransferase family


Domain annotation for each model (and alignments):
>> Sulfotransfer_1  Sulfotransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  126.2   0.0   1.8e-40   1.6e-36       2     256 ..     177     422 ..     176     432 .. 0.85

  Alignments for each domain:
  == domain 1  score: 126.2 bits;  conditional E-value: 1.8e-40
                      TSEEEEESTTSSHHHHHHHHHHHHTTTCCHHHTSSGHCT-HHHSCBTTHECCTSGCCGTTECCCHHHTTTEEHHHHHHHSTSS.EEEE...GGG CS
  Sulfotransfer_1   2 ddvlivtypKSGTtwlqellslitsegdfekaeepalfnardrspfLelydlyfpnslkppdhlrsyshvaekvvrlralesprllktHlplkl 95 
                       dv+++++pKSGTtw+q+++  + ++g+      +++   +d  pf e       +++            a  v++ +a  ++rl+ tHl +++
       KOO25185.1 177 GDVFVASFPKSGTTWMQHIVHTLATDGQSP---LAHV---SDACPFFEVD-----RTWGA------DGSLAAPVQANHAKLQRRLFNTHLRWSM 253
                      69********************88888883...4566...8999****95.....22222......234555556666666899********** PP

                      S.CHHHHTT-EEEEEE--HHHHHHHHHHHHHHBTTSTTT-S-HH....HHHHHHHTTHSTTC-HHHHHHHHHH..HTTTTTEEEEEHHHHHHHH CS
  Sulfotransfer_1  96 lpkslldsnlKiiylvRnpkdvavSryhfsrslkklkepetpfe....effdlflegrvvcgsyfdhvkswlk..lrkkgnvlflrYEdlkkdp 183
                      +pks   + ++++y+ R ++d++vS+yh+ +      e++  f+    ef+ +  +gr  +gs++ h+kswl   ++ +++vl+++YE+lk++p
       KOO25185.1 254 MPKS--HPGARYVYMTRRAADACVSFYHHLAHQA--AEDGG-FDgtldEFIVEWSAGRAPFGSWSAHLKSWLCgpAATDPRVLVISYEELKREP 342
                      ****..9**********************95444..34444.55333377666666************************************** PP

                      HHHHHHHHHHTT--..HHHHHHHHHHTSHHHHHTETTTSSTTSCTT.......TTSTSSEE--TTGGGGTSBHHHHHHHH CS
  Sulfotransfer_1 184 akeikkiaeFlGiplteeelekivkhlsfenmksnpvsnksklskg.......ekekffrkgqvgdWkneltveqaekld 256
                      + +i ++   +G  l++ +l++++ ++sfe m+s +++ ++++          e+ +f+r g vgd  + ++++q e l 
       KOO25185.1 343 RACIGRVNAHCGFGLSDARLDQLLPQFSFEWMRSHESQFQPRSVRWvrrpedsEEFHFIRAGRVGDGAKAFSPAQRELLG 422
                      ***************************************9997655999************************9998765 PP

>> Sulfotransfer_3  Sulfotransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.2   0.1   1.9e-05      0.17       2      49 ..     179     227 ..     178     258 .. 0.62
   2 !   27.4   0.0   4.4e-10     4e-06     119     215 ..     254     357 ..     228     359 .. 0.73

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 1.9e-05
                      EEEE--TTSSHHHHHHHHHT.STTEE--S--.--TT.-SBHHHHHHHHT CS
  Sulfotransfer_3   2 ifivGlpRSGTTlLhrlLaa.hpdvripeetlfvaprllalleawskdg 49 
                      +f+ ++p+SGTT+++ +      d ++p ++  +a  + +  ++w+ dg
       KOO25185.1 179 VFVASFPKSGTTWMQHIVHTlATDGQSPLAHVSDACPFFEVDRTWGADG 227
                      8***************988853334444444334333444445565555 PP

  == domain 2  score: 27.4 bits;  conditional E-value: 4.4e-10
                      HHHHBSSEEEEEEE--H.HHHHHHHHHTT----------..-.HHHHHHHHHHHHHHHHHHHHHH.........S-TTSEEEEEHHHHHH-HHH CS
  Sulfotransfer_3 119 llelfPdAkfihlvRdpvdtvlssyvslfgkkresysedsld.eledaleewarayerllaarar.........lppdrfldvrYedLvadpeg 202
                      + + +P A++++++R  +d+++s y +l++++ e+ +   +d +l++ + ew+ +   +  + a+           + r+l ++Ye+L ++p++
       KOO25185.1 254 MPKSHPGARYVYMTRRAADACVSFYHHLAHQAAEDGG---FDgTLDEFIVEWSAGRAPFGSWSAHlkswlcgpaATDPRVLVISYEELKREPRA 344
                      55679***********************887776555...554666777777664333322222233355566666779*************** PP

                      HHHHHHHHHT--- CS
  Sulfotransfer_3 203 tlrriyeflglpw 215
                       + r+ +++g  +
       KOO25185.1 345 CIGRVNAHCGFGL 357
                      *********9765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (460 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       428  (0.0238719); expected 358.6 (0.02)
Passed bias filter:                      309  (0.0172346); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.47u 0.24s 00:00:00.71 Elapsed: 00:00:00.38
# Mc/sec: 3602.31
//
Query:       KOO25186.1  [L=487]
Description: hypothetical protein Ctob_010356 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.014   15.8   7.8      0.035   14.6   7.8    1.6  1  Notch     LNR domain


Domain annotation for each model (and alignments):
>> Notch  LNR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.6   7.8   1.9e-06     0.035      18      35 ..      25      42 ..      19      43 .. 0.95

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 1.9e-06
       Notch 18 vCDeeCnneeClfDGgDC 35
                 C ++Cnn +C+ DG DC
  KOO25186.1 25 ECHRNCNNWQCNHDGEDC 42
                5***************** PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (487 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       541  (0.0301746); expected 358.6 (0.02)
Passed bias filter:                      370  (0.020637); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.51u 0.26s 00:00:00.77 Elapsed: 00:00:00.42
# Mc/sec: 3448.36
//
Query:       KOO25187.1  [L=255]
Description: hypothetical protein Ctob_010359 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (255 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       396  (0.0220871); expected 358.6 (0.02)
Passed bias filter:                      353  (0.0196888); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.42u 0.22s 00:00:00.64 Elapsed: 00:00:00.37
# Mc/sec: 2062.86
//
Query:       KOO25188.1  [L=391]
Description: beta-1,3-galactosyltransferase 1 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    7.2e-28   97.7   0.0      1e-27   97.2   0.0    1.1  1  Galactosyl_T   Galactosyltransferase
  ------ inclusion threshold ------
        2.1    9.0   7.0        5.8    7.6   7.0    1.7  1  Ribosomal_60s  60s Acidic ribosomal protein


Domain annotation for each model (and alignments):
>> Galactosyl_T  Galactosyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   97.2   0.0   1.1e-31     1e-27       1     187 [.      89     279 ..      89     286 .. 0.90

  Alignments for each domain:
  == domain 1  score: 97.2 bits;  conditional E-value: 1.1e-31
  Galactosyl_T   1 arRnaiRktWmnekeaeg...nriktlFlvGlsakedkkvkelvmeeaklygDivvvdledsYenltlKtltlllwavskvpeaklilkvDdDvyvn 94 
                   +rR+++R+t ++   a      r+ + Fl+G ++   ++v++ + +e+++ygD+++v + +sYe l  K  +  +wav   + + + + +DdD y++
    KOO25188.1  89 RRRKVVRQTYLTALAAGSemaRRVCYCFLLGAPK--PDQVEA-LAAEQAEYGDLLQVTVPESYETLFPKVTASWRWAVATHE-FSFWMHADDDSYIR 181
                   59********998755446779************..778888.6677777****************************9888.************** PP

  Galactosyl_T  95 pdkLlsllkrelidpsessvygkvl.....kegavirkkkskwyvseeeykfsryppyasGtlYvlsreavekllkaskhrkflkleDvlvGilaed 186
                    d Ll  l+  + +p+e   +g++      +  +++r+ + k y+++e+++ + ypp+asG ++++  ++v++l+++s    f+++ Dv +G+++++
    KOO25188.1 182 LDLLLRWLASPVAQPHEGLYAGYIWdgsdgRRTKPLRDPTAKSYMPYEQWPHDTYPPFASGCGFLIAYDLVASLVANSPTFTFFRVIDVPIGVCLAQ 278
                   ***********************9933222345677888888****************************************************988 PP

  Galactosyl_T 187 l 187
                   l
    KOO25188.1 279 L 279
                   6 PP

>> Ribosomal_60s  60s Acidic ribosomal protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.6   7.0   0.00065       5.8      37      72 ..     333     373 ..     321     377 .. 0.66

  Alignments for each domain:
  == domain 1  score: 7.6 bits;  conditional E-value: 0.00065
                    XXXXXXXXXXX.....XXXXXXXXXXXXXXXXXXXXXXXXX CS
  Ribosomal_60s  37 ellangaakla.....aaaaaaaaaaaaaaaaaaaeekkke 72 
                    ++++ g+  ++      aa+aaa++++  +aaa+aee++ e
     KOO25188.1 333 DAIGGGGGDATstvgtVAASAAASTGPSVGAAAKAEEQERE 373
                    56666665555666656667777777777777777777666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (391 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       451  (0.0251548); expected 358.6 (0.02)
Passed bias filter:                      343  (0.019131); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.46u 0.27s 00:00:00.73 Elapsed: 00:00:00.41
# Mc/sec: 2867.94
//
Query:       KOO25189.1  [L=259]
Description: hypothetical protein Ctob_010364 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.4e-07   31.7   6.6    4.1e-07   30.2   6.6    1.8  1  zf-RING_2     Ring finger domain
    3.6e-06   27.2   5.5    6.2e-06   26.4   5.5    1.4  1  zf-rbx1       RING-H2 zinc finger domain
    6.8e-06   26.2   2.3    1.1e-05   25.5   2.3    1.3  1  FANCL_C       FANCL C-terminal domain
      0.002   18.2   1.7     0.0035   17.4   1.7    1.4  1  zf-ANAPC11    Anaphase-promoting complex subunit 11 RING-H2 f
     0.0063   16.5   1.3      0.043   13.8   0.6    2.7  1  zf-RING_UBOX  RING-type zinc-finger
  ------ inclusion threshold ------
      0.014   15.3   6.8       0.03   14.3   6.8    1.6  1  zf-RING_5     zinc-RING finger domain
       0.11   12.6   7.1       0.21   11.7   5.7    2.3  2  RINGv         RING-variant domain
       0.13   12.1   8.0       0.47   10.3   8.0    1.9  1  zf-C3HC4_3    Zinc finger, C3HC4 type (RING finger)
        0.4   10.8   4.0       0.79    9.9   4.0    1.5  1  PHD_4         PHD-finger
       0.42   10.5   6.2        2.7    8.0   6.2    2.3  1  zf-C3HC4      Zinc finger, C3HC4 type (RING finger)
        1.2    9.0  12.0    2.2e+02    1.8  12.0    3.3  1  zf-C3HC4_2    Zinc finger, C3HC4 type (RING finger)


Domain annotation for each model (and alignments):
>> zf-RING_2  Ring finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.2   6.6   2.5e-10   4.1e-07       2      44 .]     175     237 ..     174     237 .. 0.77

  Alignments for each domain:
  == domain 1  score: 30.2 bits;  conditional E-value: 2.5e-10
   zf-RING_2   2 eCpICleel..ssads.........vlllpCgHv.fhreClerwlrssst..........CPlCr 44 
                  C+ICle+l  s  +          +  +pC+   fh+ Cl++wl+ s++          CP+Cr
  KOO25189.1 175 RCVICLEALnlS--SAsassrgeaaCGHTPCCGNyFHKRCLSQWLQGSRQsgsplpiekkCPTCR 237
                 6*****999542..333455666633355766566**********999999*************9 PP

>> zf-rbx1  RING-H2 zinc finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.4   5.5   3.8e-09   6.2e-06       2      55 .]     175     237 ..     174     237 .. 0.94

  Alignments for each domain:
  == domain 1  score: 26.4 bits;  conditional E-value: 3.8e-09
     zf-rbx1   2 tCaiCrneleeacieckapgdeecpvvlGeCgHaFHlhCiskWlkt..........rkvCPlcr 55 
                  C iC ++l+    + ++ g++ c  +   Cg  FH+ C+s+Wl+           +k+CP+cr
  KOO25189.1 175 RCVICLEALNLSSASASSRGEAACGHTP-CCGNYFHKRCLSQWLQGsrqsgsplpiEKKCPTCR 237
                 6********************9787766.9***************9999**************8 PP

>> FANCL_C  FANCL C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.5   2.3   6.5e-09   1.1e-05       3      65 ..     174     240 ..     172     244 .. 0.80

  Alignments for each domain:
  == domain 1  score: 25.5 bits;  conditional E-value: 6.5e-09
                 -S-SSS--SS-....TT-----B--S-.TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEE CS
     FANCL_C   3 veCgiCyayrl....dsgevpdisCdn.ekCnkkfHsaCLkeWlrslkesrqsfdvlfGeCPyCkkki 65 
                  +C iC+        + +++ + +C   + C++ fH+ CL +Wl++ ++s   + +   +CP C++ +
  KOO25189.1 174 ARCVICLEALNlssaSASSRGEAACGHtPCCGNYFHKRCLSQWLQGSRQSGSPLPIE-KKCPTCRRDL 240
                 579999866544555667788899975267899*****************9999986.69****9876 PP

>> zf-ANAPC11  Anaphase-promoting complex subunit 11 RING-H2 finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.4   1.7   2.1e-06    0.0035      21      82 ..     173     241 ..     160     244 .. 0.79

  Alignments for each domain:
  == domain 1  score: 17.4 bits;  conditional E-value: 2.1e-06
                 SSB-TTT-SBTTS--TTCSTTTTTS-EEEBTTS-EEEHHHHHHHHHHHST.......SSB-TTTSSB-- CS
  zf-ANAPC11  21 ddvcGicrvsfdGtcpsckfpGddcplvlGkckhnfhlhcilkwletets.......kglcpmcrqtfk 82 
                    c ic  + + +  s  + G+        c   fh+ c+ +wl+ +         +++cp cr+ ++
  KOO25189.1 173 AARCVICLEALNLSSASASSRGEAACGHTPCCGNYFHKRCLSQWLQGSRQsgsplpiEKKCPTCRRDLV 241
                 5679999999999999999999998888999**************976541223333568999998765 PP

>> zf-RING_UBOX  RING-type zinc-finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.8   0.6   2.6e-05     0.043       1      27 [.     176     222 ..     176     234 .. 0.76

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 2.6e-05
  zf-RING_UBOX   1 CpIClelft................dPlvlpCGHtFCreCl..w.....e 27 
                   C ICle ++                +P    CG  F+++Cl  w     +
    KOO25189.1 176 CVICLEALNlssasassrgeaacghTP-C--CGNYFHKRCLsqWlqgsrQ 222
                   99******9999999999988888888.4..9999******754533333 PP

>> zf-RING_5  zinc-RING finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   6.8   1.8e-05      0.03       1      44 []     175     238 ..     175     238 .. 0.85

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 1.8e-05
   zf-RING_5   1 hCnkCfekl.........skeekfyltsC.gHifCekClkkll..........ekeavCpiCrk 44 
                 +C +C e l         ++e ++  t+C g +f+++Cl++ l            e++Cp+Cr+
  KOO25189.1 175 RCVICLEALnlssasassRGEAACGHTPCcGNYFHKRCLSQWLqgsrqsgsplPIEKKCPTCRR 238
                 6********999998755455556666655***********999******************95 PP

>> RINGv  RING-variant domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.0         2   3.3e+03      15      25 ..      36      46 ..      27      62 .. 0.76
   2 ?   11.7   5.7   0.00013      0.21       1      48 []     176     236 ..     176     236 .. 0.58

  Alignments for each domain:
  == domain 1  score: -1.7 bits;  conditional E-value: 2
                B-SS--STCCC CS
       RINGv 15 ispCkCrGslk 25
                 +pC  rG l+
  KOO25189.1 36 RRPCATRGALG 46
                68999999875 PP

  == domain 2  score: 11.7 bits;  conditional E-value: 0.00013
                 ETTTTEE-SSSS.....--B-SS-...-STCCCSB-HHHHHHHHHH.......TCT-SB-TTT CS
       RINGv   1 CriCleeeeese.....plispCk...CrGslklvHesClekWlde.......keantqCeiC 48 
                 C iCle+ + s+       +  C    C G  +++H+ Cl++Wl+           +++C  C
  KOO25189.1 176 CVICLEALNLSSasassRGEAACGhtpCCG--NYFHKRCLSQWLQGsrqsgspLPIEKKCPTC 236
                 667776655555455553344443233888..8***********9943333333333336666 PP

>> zf-C3HC4_3  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   8.0   0.00029      0.47       4      46 ..     175     239 ..     173     242 .. 0.79

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.00029
                 B-TTTSS..SBS-EEETT.....EEEEEE-.....HHHHHHHHH..........TT-B-TTT--B CS
  zf-C3HC4_3   4 eCviCle..rprnvvllp.....CgHlvlC.....eeCaekllk..........rkkkCpiCrrp 46 
                  CviCle  + +++         CgH+ +C     ++C++++l+           +kkCp Crr+
  KOO25189.1 175 RCVICLEalNLSSASASSrgeaaCGHTPCCgnyfhKRCLSQWLQgsrqsgsplpIEKKCPTCRRD 239
                 6******5534444444356667*******6655567*****9999*****9999********97 PP

>> PHD_4  PHD-finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   4.0   0.00048      0.79       2      67 ..     171     236 ..     171     237 .. 0.81

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.00048
       PHD_4   2 PvtaaCivCgedgkedevveeesetpsslmeCsvCyeivHpeClkek.egegvvnedlpnsWeCpkC 67 
                 P  a C++C e+ + +++ +++s  + +      C +  H+ Cl++  +g+      lp   +Cp+C
  KOO25189.1 171 PGAARCVICLEALNLSSA-SASSRGEAACGHTPCCGNYFHKRCLSQWlQGSRQSGSPLPIEKKCPTC 236
                 66799****999888854.444788888888889**********9965555577789********** PP

>> zf-C3HC4  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.0   6.2    0.0016       2.7       1      41 []     176     236 ..     176     236 .. 0.75

  Alignments for each domain:
  == domain 1  score: 8.0 bits;  conditional E-value: 0.0016
                 -TTT-S--SS-E.......E-TTS--.B-.....CHHHHHHHHC........TSSB--TTT CS
    zf-C3HC4   1 CpiCleeakepn......elleCkHs.fC.....skCirkilks........rkkvkCPlC 41 
                 C iCle +   +          C+H+ +C     + C++++l+           ++kCP+C
  KOO25189.1 176 CVICLEALNLSSasassrGEAACGHTpCCgnyfhKRCLSQWLQGsrqsgsplPIEKKCPTC 236
                 999999999888889999555666663332222278*******99999888877778**99 PP

>> zf-C3HC4_2  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.8  12.0      0.13   2.2e+02       1      34 [.     175     220 ..     175     236 .. 0.67

  Alignments for each domain:
  == domain 1  score: 1.8 bits;  conditional E-value: 0.13
  zf-C3HC4_2   1 kCpiCldmlkdpsvvt......pCgHv......fCqkCilrsLeek 34 
                 +C iCl+ l+  s ++      +CgH+      f++ C+ ++L+ +
  KOO25189.1 175 RCVICLEALNLSSASAssrgeaACGHTpccgnyFHKRCLSQWLQGS 220
                 59999999887666666678888999766666699*******9864 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (259 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       847  (0.0472419); expected 358.6 (0.02)
Passed bias filter:                      332  (0.0185175); expected 358.6 (0.02)
Passed Vit filter:                        47  (0.00262145); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.43u 0.27s 00:00:00.70 Elapsed: 00:00:00.41
# Mc/sec: 1898.39
//
Query:       KOO25190.1  [L=363]
Description: hypothetical protein Ctob_010362 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.2e-23   82.3   0.1    1.5e-22   80.1   0.1    2.1  1  Glyco_transf_90  Glycosyl transferase family 90


Domain annotation for each model (and alignments):
>> Glyco_transf_90  Glycosyl transferase family 90
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   80.1   0.1   8.3e-27   1.5e-22       8     277 ..      15     318 ..       6     333 .. 0.73

  Alignments for each domain:
  == domain 1  score: 80.1 bits;  conditional E-value: 8.3e-27
  Glyco_transf_90   8 dyfrvieeDLkpwretgitreaverakrkal........frlviingrvyvekykksvqtrdvftiwgilqLlrkypg..klpDlelmfncdDr 91 
                      +  + +++DL++++  +itrea + a+++ +          + i n+ ++  + +++   r+   +  + + lr + g  ++pD+e+m+n+dD+
       KOO25190.1  15 ALIAGLKSDLAAFKPRSITREAFKAAQQNDHrirenditAMFGIYNNTLHWLQPDAHPRPRN-PQLYALADDLRAILGmhRVPDVEFMLNVDDY 107
                      45566789*************99988444331111111145679999999999888888884.444455555555555338************* PP

  Glyco_transf_90  92 PvvkkkdyrgkeaappPlfsycgdeet...........lDivfPdwsfw.gwpev.nikrwslllkelkegnkkvkweerepyaywkGnpsvae 172
                      P+ + k++      p+Plfs+ + e+             D++ P   f  g  +   ++r   l    ++ ++k +we++ ++ay++G p    
       KOO25190.1 108 PKAQGKAHG----VPVPLFSFTKRETRdastgrtssldFDVLVPSGAFRmGYYDArLMGRLPGLPGPPAAWEAKFPWEAKLAKAYFRGTPYCGI 197
                      *99999877....8*******9865422222222333379********99988873589*****************************997654 PP

  Glyco_transf_90 173 ......tReeLlkcnrs.kkelvdarltkq..........dekkeskegvkessledqckhkYkiyieGvaasvsekyilacdslvllvkpeyy 249
                            +R  L +++++ +  l+d+ l++           +++ +  +++   + e   ++k+ + ++G ++s +++ +l+ ++ vl+++++y 
       KOO25190.1 198 hrfgrcSRYVLPRLAHEgRAPLLDVGLVEYepshdserhlNRSLAPLTKAPREPPEAMGRYKWLLHLDGHSYSARLQNLLLTNAAVLKQQSMYV 291
                      1111135777888886624568888888888888755533222222223334455667789999****************************** PP

  Glyco_transf_90 250 dffsreLkplehYvPikskdklrdlkea 277
                      ++++r L+p+ehY+P+   +  +d+ e 
       KOO25190.1 292 EYYYRALQPWEHYIPFYV-TAHDDIVEV 318
                      ***************977.444555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (363 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       310  (0.0172904); expected 358.6 (0.02)
Passed bias filter:                      290  (0.0161749); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.23s 00:00:00.67 Elapsed: 00:00:00.37
# Mc/sec: 2919.61
//
Query:       KOO25191.1  [L=233]
Description: hypothetical protein Ctob_010363 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
  ------ inclusion threshold ------
      0.026   14.6   0.0      0.055   13.6   0.0    1.5  2  ARL2_Bind_BART  The ARF-like 2 binding protein BART


Domain annotation for each model (and alignments):
>> ARL2_Bind_BART  The ARF-like 2 binding protein BART
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.0   3.1e-06     0.055      31     111 ..     102     183 ..      97     188 .. 0.85
   2 ?   -2.7   0.0      0.35   6.3e+03      58      83 ..     195     221 ..     184     226 .. 0.59

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 3.1e-06
                     HTT--SS-SSTTHHHHHHHHHHHHHHHHHHHHTT-SSS--THHHHH....SS-GGSSHHHHHHHHGGG-...HHHHHHHHHHHH CS
  ARL2_Bind_BART  31 ivFddeeenkleytdihkeYkklveklleslleeigismeeflealekslsekkevakkvfeqllaadD...FeaFkkmMvkrn 111
                     + F+++    l+ +  h     ++e+ le +l + g s  e+++ +  + ++++    + ++ llaa++   ++aF ++M++++
      KOO25191.1 102 DGFENDALRHLSLKATHAALSGVLETALEAFLRASGSSVTELVQVV--ARAKDRGDPLRCIDVLLAASEyaeYAAFFELMMDYK 183
                     6688888899999999******************************..4444445578999*****998666889******998 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 0.35
                     HHHHHTT-.SSS--THHHHH....SS- CS
  ARL2_Bind_BART  58 leslleei.gismeeflealekslsek 83 
                      +s+++++  +s+++++ a +++  ++
      KOO25191.1 195 PDSVVSQMsVVSPDKVAAASQQQRDQH 221
                     566666775677777777774433333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (233 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       417  (0.0232584); expected 358.6 (0.02)
Passed bias filter:                      337  (0.0187964); expected 358.6 (0.02)
Passed Vit filter:                        12  (0.000669307); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.26s 00:00:00.69 Elapsed: 00:00:00.43
# Mc/sec: 1643.97
//
Query:       KOO25192.1  [L=262]
Description: zinc metalloproteinase nas-13-like protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.5e-46  155.1  82.4    1.4e-09   38.3   8.2    6.1  6  ShK       ShK domain-like
    8.3e-05   22.4   3.7        2.6    8.1   0.0    4.8  4  zf-CCCH   Zinc finger C-x8-C-x5-C-x3-H type (and similar)


Domain annotation for each model (and alignments):
>> ShK  ShK domain-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.1   7.0   5.6e-11     5e-07       2      38 .]      25      60 ..      24      60 .. 0.95
   2 !   38.3   8.2   1.6e-13   1.4e-09       2      38 .]      64      98 ..      63      98 .. 0.99
   3 !   34.7   5.3   2.1e-12   1.9e-08       2      38 .]     102     136 ..     101     136 .. 0.99
   4 !   30.2   9.0   5.5e-11   4.9e-07       1      38 []     139     174 ..     139     174 .. 0.98
   5 !   27.3   7.1   4.4e-10     4e-06       2      38 .]     179     213 ..     178     213 .. 0.97
   6 !   26.9   6.0   5.9e-10   5.2e-06       2      38 .]     217     251 ..     216     251 .. 0.98

  Alignments for each domain:
  == domain 1  score: 30.1 bits;  conditional E-value: 5.6e-11
         ShK  2 CtDpssdCaswaalgfCtnptyrdlmkeqCpktCgfC 38
                C D+s++Ca+waa+g+C+  + ++  ++ Cp +Cg+C
  KOO25192.1 25 CNDKSTSCAFWAANGECSGEN-SEHLATLCPHSCGTC 60
                9*****************777.79************* PP

  == domain 2  score: 38.3 bits;  conditional E-value: 1.6e-13
         ShK  2 CtDpssdCaswaalgfCtnptyrdlmkeqCpktCgfC 38
                C+D++++C++wa++g C++++   +m + Cp++Cg+C
  KOO25192.1 64 CKDTDVSCPNWAKNGDCKSNA--GFMLKACPTSCGLC 98
                *********************..************** PP

  == domain 3  score: 34.7 bits;  conditional E-value: 2.1e-12
         ShK   2 CtDpssdCaswaalgfCtnptyrdlmkeqCpktCgfC 38 
                 CtD s dC+ w+++g C +++   +m  +Cp +Cg+C
  KOO25192.1 102 CTDLSADCPGWTSAGACGDNP--GFMLNHCPVSCGVC 136
                 *********************..************** PP

  == domain 4  score: 30.2 bits;  conditional E-value: 5.5e-11
         ShK   1 tCtDpssdCaswaalgfCtnptyrdlmkeqCpktCgfC 38 
                 +CtD++ dC+ wa++++C +++   +  + Cpk+C +C
  KOO25192.1 139 ECTDTHNDCPGWAKADQCHKNP--GYTLKTCPKSCEVC 174
                 5*********************..************** PP

  == domain 5  score: 27.3 bits;  conditional E-value: 4.4e-10
         ShK   2 CtDps.sdCaswaalgfCtnptyrdlmkeqCpktCgfC 38 
                 C+D++ ++Ca w    +C n++    +  +CpktCg+C
  KOO25192.1 179 CEDKNaTQCAIWGET-ECANNP--GAVMRDCPKTCGVC 213
                 ***************.5*****..************** PP

  == domain 6  score: 26.9 bits;  conditional E-value: 5.9e-10
         ShK   2 CtDpssdCaswaalgfCtnptyrdlmkeqCpktCgfC 38 
                 C D+ + C  wa +g+C+ ++  + m + Cp +Cg+C
  KOO25192.1 217 CADKEPACHDWAIKGECETNP--NSMLALCPQSCGTC 251
                 ******************999..************** PP

>> zf-CCCH  Zinc finger C-x8-C-x5-C-x3-H type (and similar)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.6   0.0    0.0017        15       2      16 ..      28      42 ..      27      42 .. 0.86
   2 !    8.1   0.0   0.00029       2.6       6      16 ..      71      81 ..      68      81 .. 0.93
   3 ?   -3.4   0.1       1.1   9.9e+03       5      15 ..     108     118 ..     107     119 .. 0.72
   4 !    6.1   0.0    0.0012        11       2      15 ..     220     233 ..     219     234 .. 0.93

  Alignments for each domain:
  == domain 1  score: 5.6 bits;  conditional E-value: 0.0017
                HCHCBCHHHHHS--T CS
     zf-CCCH  2 ktelCrffmrtGyCk 16
                k   C f++ +G+C+
  KOO25192.1 28 KSTSCAFWAANGECS 42
                5667**********6 PP

  == domain 2  score: 8.1 bits;  conditional E-value: 0.00029
                BCHHHHHS--T CS
     zf-CCCH  6 CrffmrtGyCk 16
                C++++++G Ck
  KOO25192.1 71 CPNWAKNGDCK 81
                **********8 PP

  == domain 3  score: -3.4 bits;  conditional E-value: 1.1
                 CBCHHHHHS-- CS
     zf-CCCH   5 lCrffmrtGyC 15 
                  C+ +   G+C
  KOO25192.1 108 DCPGWTSAGAC 118
                 57777778888 PP

  == domain 4  score: 6.1 bits;  conditional E-value: 0.0012
                 HCHCBCHHHHHS-- CS
     zf-CCCH   2 ktelCrffmrtGyC 15 
                 k++ C++++  G+C
  KOO25192.1 220 KEPACHDWAIKGEC 233
                 89************ PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (262 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       765  (0.0426683); expected 358.6 (0.02)
Passed bias filter:                      154  (0.00858944); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.43u 0.24s 00:00:00.67 Elapsed: 00:00:00.39
# Mc/sec: 2017.95
//
Query:       KOO25193.1  [L=341]
Description: acetylpolyamine aminohydrolase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    6.5e-27   94.8   1.7      4e-25   88.9   1.7    2.0  1  Hist_deacetyl  Histone deacetylase domain


Domain annotation for each model (and alignments):
>> Hist_deacetyl  Histone deacetylase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   88.9   1.7   2.2e-29     4e-25      80     303 ..     125     329 ..      62     332 .. 0.78

  Alignments for each domain:
  == domain 1  score: 88.9 bits;  conditional E-value: 2.2e-29
                    STHCTTTCCHHHHHHHHHHHHHHHHHHTTSSSEEEETTSS--TT-BTTB-BTTBSS-HHHHHHHHHHHCC-SS-EEEEE-SSS--HHHHHHCTT-T CS
                    xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Hist_deacetyl  80 dtpvspktlkaallavgavleavdavlsgsvkaafvlvrPpgHHakaseasGFClvNnvaiaikylqakhelkrvailDvDvHhGnGteeafysdp 175
                     tp+ ++t+++    ++ + +av+ +l g+ +aa++l   pgHHa a+  +GFC++N++a a  +l++    k+ + +DvD H G+Gt ++++s++
     KOO25193.1 125 LTPIYDNTAEVLADDAAVCAHAVEMILAGR-SAAYALTTHPGHHAFADYYGGFCFMNHAAFAFSRLRQ-A-GKKPFLIDVDYHAGDGTASFLSSRD 217
                    3567778888888899999********994.8999999****************************99.3.469999***************9999 PP

                    TEEEEEEEE-CCTSTTSS--TT---SGGGTTSEEEEEE-TT-BHHHHHHHHHHCHHHHHCCH--..SEEEEEE-STTBTTS....TT-S-BB-HHH CS
                    xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxx....xxxxxxxxxxx RF
  Hist_deacetyl 176 dvltlSiHryegifyPgtgaledlgegkgkgfnlnvpleegtgdeeylkvfeeilrpvleefkP..dlilvsaGfDalkgd....plgelnlsveg 265
                     v   S+H  ++  yP+t     l           +  ++ t  e y  +++e+l    ++  P  d++++s+GfD+ +gd    + ++l+l++e+
     KOO25193.1 218 MV---SLHALND--YPYTP----LD------CPYAIFTPPDTAWEGYEPLLREAL----SRRPPetDVLVLSLGFDTQDGDpcaaEGHRLRLQPED 294
                    75...9***555..**442....21......234455556655555555555555....55444339**************9999899******** PP

                    HHHHHHHHCCCHGS-G.EEEEE-S---HHHHHHHHHHH CS
                    xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Hist_deacetyl 266 ykeltkklaeladkvkkvvllleGGYnlealaravtav 303
                    ++++   + e+     +++++ eGGY ++++++a++++
     KOO25193.1 295 FAKMRAVIDETGL---QLIVTQEGGYLMSSVHKAAAEF 329
                    ****999999998...89***********999998775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (341 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       250  (0.0139439); expected 358.6 (0.02)
Passed bias filter:                      234  (0.0130515); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.25s 00:00:00.70 Elapsed: 00:00:00.40
# Mc/sec: 2570.95
//
Query:       KOO25194.1  [L=295]
Description: hypothetical protein Ctob_009625 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (295 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       406  (0.0226449); expected 358.6 (0.02)
Passed bias filter:                      350  (0.0195214); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.41u 0.24s 00:00:00.64 Elapsed: 00:00:00.38
# Mc/sec: 2299.04
//
Query:       KOO25195.1  [L=79]
Description: hypothetical protein Ctob_009624 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
     0.0036   15.9   0.7      0.004   15.8   0.7    1.0  1  Macoilin  Macoilin family
  ------ inclusion threshold ------
      0.014   15.5   0.2      0.018   15.2   0.2    1.2  1  CREPT     Cell-cycle alteration and expression-elevated prote


Domain annotation for each model (and alignments):
>> Macoilin  Macoilin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.7   4.5e-07     0.004     459     498 ..      38      77 ..      31      79 .] 0.89

  Alignments for each domain:
  == domain 1  score: 15.8 bits;  conditional E-value: 4.5e-07
    Macoilin 459 sakqkdkqtlqqlekrLkeekearaslekqLaeekkrkke 498
                 +a  k + ++ +l+k+L+ee ++r+++e+ Lae +k k+ 
  KOO25195.1  38 EASYKSRGSIDELQKKLEEETKKRMEVEAMLAEVQKGKRV 77 
                 46679999***************************99985 PP

>> CREPT  Cell-cycle alteration and expression-elevated protein in tumour
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.2   0.2     2e-06     0.018      56      89 ..      43      76 ..      25      79 .] 0.80

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 2e-06
       CREPT 56 alellaeYnkrLeaeleeRkklakmledfleaqk 89
                +   ++e  k+Le+e+++R +++ ml++ ++ ++
  KOO25195.1 43 SRGSIDELQKKLEEETKKRMEVEAMLAEVQKGKR 76
                4557899*******************99887665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (79 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1547  (0.0862848); expected 358.6 (0.02)
Passed bias filter:                      747  (0.0416643); expected 358.6 (0.02)
Passed Vit filter:                        73  (0.00407162); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.36u 0.23s 00:00:00.59 Elapsed: 00:00:00.36
# Mc/sec: 661.04
//
Query:       KOO25196.1  [L=149]
Description: DNA-binding protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.9e-27   95.7   0.9    2.3e-27   95.5   0.9    1.1  1  DUF296    Plants and Prokaryotes Conserved (PCC) domain


Domain annotation for each model (and alignments):
>> DUF296  Plants and Prokaryotes Conserved (PCC) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   95.5   0.9   1.3e-31   2.3e-27       2     105 ..      15     121 ..      14     123 .. 0.97

  Alignments for each domain:
  == domain 1  score: 95.5 bits;  conditional E-value: 1.3e-31
                 EEEEEE-TTSBHHHHHHHHHHHHT-SSEEEEEEEEEEEEEE.EEECTTT..EE-S-EEEEEEEEEEEETT.EEEEEEEEETTSEEEEEEEEEE.EEEEE CS
      DUF296   2 phvlrlepGediveaieefarkrgiraacvlsaiGavsnvt.rladgee..kllgrfeilslsGtilpdg.lHlhvslagedgqvvgGhlaegplvaat 96 
                 +hvlrl pG d++ ++ e++ + g ra +v++++G+++++t r+a+++e   ++g+fei+sl+Gt+ +d  +Hlh+sl++++g +vgGh++eg ++++t
  KOO25196.1  15 VHVLRLRPGADLLVELREYVARAGLRASFVVTCVGSLTRATlRYANQSEaaVVTGHFEICSLVGTMGRDAlPHLHISLSDGKGAMVGGHVLEG-CTIYT 112
                 69***********************************************99999**************889**********************.999** PP

                 EEEEEEEE- CS
      DUF296  97 tvevvvaef 105
                 t+evv++e+
  KOO25196.1 113 TAEVVLGEC 121
                 ******986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (149 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       324  (0.0180713); expected 358.6 (0.02)
Passed bias filter:                      289  (0.0161191); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.35u 0.23s 00:00:00.57 Elapsed: 00:00:00.35
# Mc/sec: 1257.55
//
Query:       KOO25197.1  [L=484]
Description: transmembrane protein 144 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.9e-87  292.0  13.3    7.2e-80  268.5   9.7    2.2  2  TMEM144          Transmembrane family, TMEM144 of transporter
    3.5e-09   36.4   9.0    3.5e-09   36.4   9.0    2.9  3  Sugar_transport  Sugar transport protein


Domain annotation for each model (and alignments):
>> TMEM144  Transmembrane family, TMEM144 of transporters
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.9   0.1   9.7e-10   8.7e-06      13      50 ..     138     175 ..     124     184 .. 0.85
   2 !  268.5   9.7     8e-84   7.2e-80      54     336 .]     211     482 ..     207     482 .. 0.91

  Alignments for each domain:
  == domain 1  score: 24.9 bits;  conditional E-value: 9.7e-10
     TMEM144  13 lfGsmfvPlkkfdskdGlfvqwvmslaillvglvvaat 50 
                 l+G+    +k++++ dG++ qwvm+ ai+++gl+++++
  KOO25197.1 138 LVGAKVSAVKRYETYDGMYYQWVMCSAIWMTGLLIQLL 175
                 67899999*************************99865 PP

  == domain 2  score: 268.5 bits;  conditional E-value: 8e-84
     TMEM144  54 pkfePlamlgGalyavgnalavpiieriGlavgiLiWntvnclvGWavtRfGlfgi...kaqvpksdlLnylGivlvvvggvlflfikevpkenetesd 149
                  kf P+a+lgGal+a+gn+l+vp+i+ iGl++g+LiW++ n+l+GWa++ fGl ++   + ++ ks+ Lny G++l+v++  ++++ik  +++   ++d
  KOO25197.1 211 VKFVPVACLGGALWATGNTLSVPVINMIGLSLGLLIWGSANMLMGWASGMFGLVTNghgDLEHLKSPPLNYAGVALTVIALGMYTQIKPAEQTRAVNYD 309
                 589**************************************************996222567899***********************88856666666 PP

     TMEM144 150 tsaleveekkeleedesedddkvskeragavkrllaillaivagvlyGltlvPviyikdkeelypgasqegldYvfsfylgifltstvilliYsivkkn 248
                 + +        +++   +++   +k+   +vkr+l i+ a+ ag+l+G+t++P  ++k++++     ++++ldY+fs+++gif tst+ +++Y+++++ 
  KOO25197.1 310 VGG--------MNDVLLSNHAATTKQ--QSVKRMLGIFGAVAAGILFGNTFSPPSWVKANHH----GPTNDLDYIFSHFTGIFATSTLWFIVYCVIMRG 394
                 554........344444444333333..3589***************************995....8999***************************** PP

     TMEM144 249 kplveselvlPsllaGilwaiavtsffvanqkLsqvvsyPiiskaPgliaalwsvflfkeikGkrnlillaiavaitligvilvalsk 336
                 +p+++++l lP++l+G++waia+t++f+an  +sq v++P+i   Pg+++alw+vf f ei+G rn+++l +a+  +l+g i+++lsk
  KOO25197.1 395 SPMINNRLTLPAMLSGVMWAIAQTMWFLANTAMSQSVAFPMICSGPGIVSALWGVFAFGEISGARNYVVLCLAILTALTGCIMIGLSK 482
                 ***************************************************************************************8 PP

>> Sugar_transport  Sugar transport protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.2      0.37   3.3e+03      77     109 ..     121     154 ..     111     176 .. 0.63
   2 !    6.7   0.7   0.00046       4.1      49      84 ..     208     243 ..     200     265 .. 0.83
   3 !   36.4   9.0   3.9e-13   3.5e-09      34     133 ..     381     481 ..     373     484 .] 0.85

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 0.37
  Sugar_transport  77 klvgvskamPistglq.LvgasLigvlvlgeWst 109
                      ++++ s a P ++++  Lvga + +v  ++ +++
       KOO25197.1 121 AILSLSAAAPSTNAVDtLVGAKVSAVKRYETYDG 154
                      5667777777777764367766666655555544 PP

  == domain 2  score: 6.7 bits;  conditional E-value: 0.00046
  Sugar_transport  49 eltlkillvslisGllWaigqllqfkalklvgvska 84 
                      e+++k + v+ ++G+lWa g +l   +++++g s  
       KOO25197.1 208 EYSVKFVPVACLGGALWATGNTLSVPVINMIGLSLG 243
                      568889999***********************9965 PP

  == domain 3  score: 36.4 bits;  conditional E-value: 3.9e-13
  Sugar_transport  34 gallfalilflvkqpel.tlkillvslisGllWaigqllqfkalklvgvskamPistglqLvgasLigvlvlgeWstsiqvilGllaliliviG 126
                      ++l f +  ++++ + + + ++ l +++sG++Wai+q++ f a ++++ s+a P+  +   + ++L+gv+++ge s++ + ++ +la++  + G
       KOO25197.1 381 STLWFIVYCVIMRGSPMiNNRLTLPAMLSGVMWAIAQTMWFLANTAMSQSVAFPMICSGPGIVSALWGVFAFGEISGARNYVVLCLAILTALTG 474
                      5666666666666555549999999*****************************87777777789***************************** PP

  Sugar_transport 127 ivltslk 133
                      +++  l+
       KOO25197.1 475 CIMIGLS 481
                      9997665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (484 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       629  (0.0350828); expected 358.6 (0.02)
Passed bias filter:                      336  (0.0187406); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.52u 0.26s 00:00:00.78 Elapsed: 00:00:00.42
# Mc/sec: 3424.93
//
Query:       KOO25198.1  [L=504]
Description: pescadillo-family brct domain protein, partial [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
   1.2e-105  353.0   0.1   1.6e-105  352.6   0.1    1.1  1  Pescadillo_N  Pescadillo N-terminus
    6.5e-07   29.7   0.0    1.2e-06   28.8   0.0    1.5  1  BRCT_2        BRCT domain, a BRCA1 C-terminus domain
    9.7e-05   22.7   0.0    0.00025   21.4   0.0    1.7  1  BRCT          BRCA1 C Terminus (BRCT) domain
  ------ inclusion threshold ------
       0.14   12.4   0.0       0.81   10.0   0.0    2.2  2  LIG3_BRCT     DNA ligase 3 BRCT domain


Domain annotation for each model (and alignments):
>> Pescadillo_N  Pescadillo N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  352.6   0.1  3.5e-109  1.6e-105       2     257 ..      33     284 ..      32     294 .. 0.97

  Alignments for each domain:
  == domain 1  score: 352.6 bits;  conditional E-value: 3.5e-109
  Pescadillo_N   2 kkkegeakkyitrkqalkkLqlslkdFRrLCilKGiyPrepkkkkkankgstaaktyYyakdikfLlhepilekfreikafakklkkalakkekeka 98 
                   kkk+g+a +y+tr+ a++kLq+ lkdFR+LCilKGiyPrepkkk k  +     +tyY+akdi fLlhep+l+kfre+kaf kk++ka +++e ++a
    KOO25198.1  33 KKKNGSAGRYMTRTSAVNKLQVPLKDFRKLCILKGIYPREPKKKFKGGN-----TTYYFAKDILFLLHEPLLAKFREQKAFLKKIRKASGRHERKRA 124
                   899******************************************9999.....9****************************************** PP

  Pescadillo_N  99 krleknkpkykldhiikeRYPtfidAlrdldDaLsliflfatlpktkkikekliekcerlaeefqayviksrslrkvFlSiKGiYyqaeikgqkvtW 195
                   +rl+ ++p ykldh+i+eRYPtf dAl+dldDaL+l+flfa+l  +k ++++ +++c+rl +ef ayv+++r+lrkvF+SiKGiYyqae++g ++tW
    KOO25198.1 125 ERLDGRRPVYKLDHLIRERYPTFADALQDLDDALCLVFLFASLAPSKFVHASRVQACSRLRREFYAYVARTRTLRKVFISIKGIYYQAEVNGVTLTW 221
                   ************************************************************************************************* PP

  Pescadillo_N 196 lvP.ykfaqklekdvdfkvmltflefYetllkfvnfkLykslnlkyppkldeekdekaaelea 257
                   + P ++faq+ + +vd++vml+fle+Ye+++ fvnfkL+++l+ +ypp++d++ d++  +l a
    KOO25198.1 222 VEPhHSFAQQPTMSVDYRVMLSFLELYEAIMTFVNFKLFHDLGAAYPPEIDTKADAAGVHLGA 284
                   ***667999999***************************************999988776665 PP

>> BRCT_2  BRCT domain, a BRCA1 C-terminus domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.8   0.0   2.7e-10   1.2e-06       3      85 .]     399     487 ..     397     487 .. 0.79

  Alignments for each domain:
  == domain 1  score: 28.8 bits;  conditional E-value: 2.7e-10
      BRCT_2   3 klFeglrFYindaepspsreklkklIeknGGevveti........tsavyiviaesneee.laekrkrrvvspkyIkdCikkgkllplenyl 85 
                 +lF g+  +      ++    l+ +I ++GG+v  +         + +v++ i+ +  e   a  +kr+ v+p++++dC+++ +llp + y+
  KOO25198.1 399 TLFAGCYLFC---GRETPVPSLEFIILACGGKVGWQGeaspfqegDACVTHQIVDRPMEGqPAAAAKRELVQPQWVYDCLNARQLLPTHAYR 487
                 6777777777...555677789999********44444444555466788888888877789999***********************9996 PP

>> BRCT  BRCA1 C Terminus (BRCT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.4   0.0   5.6e-08   0.00025       4      79 .]     399     475 ..     397     475 .. 0.94

  Alignments for each domain:
  == domain 1  score: 21.4 bits;  conditional E-value: 5.6e-08
                 TTTTTEEEEEEESTSSHHHHHHHHHHHHTTCEE........ESSCSTTSSEEEESSSHSHHHHHHHHHHTTSEEEETHHHHHHH CS
        BRCT   4 llfhgckfvitgvldnftrdeleelikehGGkv........ttevskktthlvvgepesrslkylealklnipivheewlldci 79 
                 +lf gc  ++     +++ ++le +i  +GGkv         +e +  +th +v+ p     + + a + + ++v ++w++dc+
  KOO25198.1 399 TLFAGCYLFC---GRETPVPSLEFIILACGGKVgwqgeaspFQEGDACVTHQIVDRP----MEGQPAAAAKRELVQPQWVYDCL 475
                 79********...99999************************************999....677999999999**********7 PP

>> LIG3_BRCT  DNA ligase 3 BRCT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.1      0.41   1.8e+03      16      31 ..     177     192 ..     171     223 .. 0.77
   2 ?   10.0   0.0   0.00018      0.81      27      80 ..     421     479 ..     396     480 .. 0.65

  Alignments for each domain:
  == domain 1  score: -0.7 bits;  conditional E-value: 0.41
   LIG3_BRCT  16 svedykklrRYfiAyd 31 
                  v++ ++lrR f Ay 
  KOO25198.1 177 RVQACSRLRREFYAYV 192
                 5788888888888884 PP

  == domain 2  score: 10.0 bits;  conditional E-value: 0.00018
   LIG3_BRCT  27 fiAydGdlvkeekeke.......aTHvvvskkeeskkekeksknakaVtaewiwesIkkrt 80 
                 ++A +G++  + +++        +TH +v+ +   + + + + + + V ++w+ ++ ++r+
  KOO25198.1 421 ILACGGKVGWQGEASPfqegdacVTHQIVDRP--MEGQPAAAAKRELVQPQWVYDCLNARQ 479
                 566666665544433355566779******88..6667777778899**********9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (504 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       618  (0.0344693); expected 358.6 (0.02)
Passed bias filter:                      465  (0.0259356); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.57u 0.23s 00:00:00.80 Elapsed: 00:00:00.42
# Mc/sec: 3616.37
//
Query:       KOO25199.1  [L=344]
Description: prohibitin domain-containing protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (344 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       218  (0.0121591); expected 358.6 (0.02)
Passed bias filter:                      208  (0.0116013); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.43u 0.22s 00:00:00.65 Elapsed: 00:00:00.38
# Mc/sec: 2696.91
//
Query:       KOO25200.1  [L=345]
Description: hypothetical protein Ctob_009622 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (345 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2153  (0.120085); expected 358.6 (0.02)
Passed bias filter:                      414  (0.0230911); expected 358.6 (0.02)
Passed Vit filter:                        59  (0.00329076); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.61u 0.28s 00:00:00.89 Elapsed: 00:00:00.47
# Mc/sec: 2188.40
//
Query:       KOO25201.1  [L=545]
Description: sugar transporter [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    9.6e-88  295.0  11.0    2.2e-87  293.8  11.0    1.5  1  Sugar_tr  Sugar (and other) transporter
    2.4e-19   69.5  32.2    1.6e-18   66.8  27.6    2.1  2  MFS_1     Major Facilitator Superfamily
  ------ inclusion threshold ------
      0.061   11.6   0.1        0.1   10.9   0.1    1.3  1  OATP      Organic Anion Transporter Polypeptide (OATP) family


Domain annotation for each model (and alignments):
>> Sugar_tr  Sugar (and other) transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  293.8  11.0   3.7e-91   2.2e-87       3     450 ..      47     516 ..      45     517 .. 0.90

  Alignments for each domain:
  == domain 1  score: 293.8 bits;  conditional E-value: 3.7e-91
                 HHHHHHHHHHHHHHHCGGGTHHHHHHHHTSTT--SHHHHHH...HHHHHHHTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH-TTTT.. CS
    Sugar_tr   3 lvaalggllfgYdtgvigafltllkfaknfglsksksskeessvlsglivsiflvGaiiGslfagllgdrfGRkkslliaavlfvigavlqaaakgk.. 99 
                 +va++++ll g+ +g+  + +    + ++f+   ++ +    ++++ l+++ +++G+++Gs+fa++ +d +GR+ +++i+ ++ v+g+++ a+      
  KOO25201.1  47 VVASFTPLLCGFSIGITCGNIGGVLQNSDFQRRYHNPD----DLTLQLLAATMQIGSVVGSMFASWSADALGRRAAIMISMAVIVAGSAVLALPAVLpg 141
                 78999999999999997766665554555544444432....35689**********************************************998888 PP

                 SS-TGGGGGHHHHHHHHHHHHHHHHHHHHTTS-SCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTSS-TTHHHHHHHCCHHHHHHHHHHG.GGS---HHH CS
    Sugar_tr 100 nsvevlivgRvlvGigvGlasvlvPmyisEiApkklRgalvslyqlaitfGilvaaifglglnktsnadgwrillglqlvpallllill.lflPESPry 197
                  ++  l+vgR+l G++ Gl +++vP+ +sE Ap+++Rga+ s +qlai +Gilva+ +++g+ + +n  gw + l+  l   ll+l++  + lPESPr+
  KOO25201.1 142 GQLFPLFVGRLLNGLANGLGCTVVPLHVSETAPAHHRGAIESSFQLAIELGILVAYLINWGVGEWRN--GWTLALAAPLPTGLLFLVVAsMQLPESPRF 238
                 99*****************************************************************..*********99998777665699******* PP

                 HHHTT-HHHHHHHHHH.HHHC.HHHHHHHHHHHHHHHHHHH.....HTTHHHHSH...HHHHHHHHHHHHHHTTHHHHHHHTTTHHHHSS-THH..... CS
    Sugar_tr 198 lvekgkeeeakevlak.lrge.edadrelaeekdsleaeqeeekaswkellssktvrqrlligvvlqifqqltGinaimyysptifenlglsks..... 289
                 lv +g+  ea +vla  lr+  +d++ e+a++ +++++  ++  +sw ell++ +vr+r+++++v+  +q  tGi  ++ ++p+if  +          
  KOO25201.1 239 LVARGRSAEAAAVLASsLRTPlDDVSAEVAAIEAAHDEHAQA-VVSWTELLGR-GVRRRVIVAIVVLTLQVGTGIDLVTVFAPRIFAAALGGANatgdg 335
                 ****************76665699999999999999988444.7*********.9*******************************9874333335779 PP

                 ...............HHHHHHHHHHHHHHHHHHHHHHHHS-SHHHHHHHHHHHHHHHHHHH..HHHHTTSS........CHHHHHHHHHHHHHHHTTTT CS
    Sugar_tr 290 ...............llvtiivgvvnfvatfvaiflvdrfGRRtllllGaagmaicfvilgivalllvaks.....kaasivaivfialfialfalgwg 368
                                 l ti+vgvv  v+t   i  +dr+GRR lll+G+a m++ ++ l+ ++  l++++          +++++++ f+a+f+++wg
  KOO25201.1 336 sgsgdldpaqanpraNLYTILVGVVFCVVTPWTIVSIDRCGRRLLLLMGSALMTLSLMGLAVAFRQLEQGHaqaygGTLPAMCVALVLTFVAAFSFSWG 434
                 99999*********99********************************************96666666666966655556678889999********** PP

                 HHHHHHHHHHSHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHT-HHHHHHHHHHHHHHHHHHHHS--STT--CCCCGG CS
    Sugar_tr 369 pvpwvlvsElfpqsvRskalaiavavnwlanflisllfpiiteaigggyvflvfaglavlfiifvfffvpetkgrtleeiee 450
                 pv wv+ sEl  +++R+k+ a+ +++nw+a +++   f  +  a+g++++f+++a +++ +++fv++ vpetkgr+le++ e
  KOO25201.1 435 PVAWVIPSELIGSRLRAKVVALGTVMNWTADYAVVGSFLSLNHALGEAGSFALYALINLGAFVFVWLLVPETKGRQLEDVAE 516
                 ******************************************************************************9875 PP

>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.8  27.6   2.7e-22   1.6e-18       2     345 ..      54     461 ..      53     464 .. 0.77
   2 !    5.2   0.1    0.0014       8.7     140     187 ..     469     516 ..     466     534 .. 0.70

  Alignments for each domain:
  == domain 1  score: 66.8 bits;  conditional E-value: 2.7e-22
       MFS_1   2 llaaflsalarsilgpalpl.alaedlg.ispseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllllf.a....sslwlllvlrv 93 
                 ll++f ++++ +++g +l     ++ ++  +  +++ll+++  +g++v+s+++++ +d +Grr  +++++++ ++g+++l++ a     +l++l+v+r+
  KOO25201.1  54 LLCGFSIGITCGNIGGVLQNsDFQRRYHnPDDLTLQLLAATMQIGSVVGSMFASWSADALGRRAAIMISMAVIVAGSAVLALpAvlpgGQLFPLFVGRL 152
                 57889999999999999998777777773555557889999***********************9999999999995555542246678899******* PP

       MFS_1  94 lqGlgagalfpagaaliadwfpkeergraigllsagfslGailgpllgglla.sslgWravfyilaivsllafvlfllllpeepperkrkspkeee... 188
                 l Gl+ g++ +++   +++ +p  +rg   + +++++ lG+++++l+   +     gW+++  +  + +ll++v++ + lpe+p+              
  KOO25201.1 153 LNGLANGLGCTVVPLHVSETAPAHHRGAIESSFQLAIELGILVAYLINWGVGeWRNGWTLALAAPLPTGLLFLVVASMQLPESPRFLVARGRS--Aeaa 249
                 ********************************************9999999944445999999999999999776555554444444444333..3458 PP

       MFS_1 189 .......................kgtgpaplvpawkallkdpvlw....illialllfffgfsglltllplylqevlgls..................g 242
                                        + +++a++v  w++ll + v      ++++  l +++g+ +++++ p ++   lg +                   
  KOO25201.1 250 avlasslrtplddvsaevaaieaAHDEHAQAVVSWTELLGRGVRRrvivAIVVLTLQVGTGIDLVTVFAPRIFAAALGGAnatgdgsgsgdldpaqanP 348
                 9999999999999999999999955555555555888888886644433566666666778888*******9999999999**************9952 PP

       MFS_1 243 lllaglllallalvgailallagrls.drlgrrrrlllallllllaalglallavt...........ssavllllvlvl.iGfglgfv.fpsllalasd 327
                    ++ +  l+++v++++   ++ +s dr grr  ll++ +l++l+++gla++              + +++++ +lvl +  +++f   p ++++ s+
  KOO25201.1 349 -RANL-YTILVGVVFCVVT-PWTIVSiDRCGRRLLLLMGSALMTLSLMGLAVAFRQleqghaqayggTLPAMCV-ALVLtFVAAFSFSwGPVAWVIPSE 443
                 .4444.2333333333334.6666666***************************99*99998888743333333.444414446666657888999999 PP

       MFS_1 328 lappeeagtasglfntag 345
                 l++ + ++++++l ++++
  KOO25201.1 444 LIGSRLRAKVVALGTVMN 461
                 99********99988775 PP

  == domain 2  score: 5.2 bits;  conditional E-value: 0.0014
       MFS_1 140 lgglla..sslgWravfyilaivsllafvlfllllpeepperkrkspkee 187
                 +g++l+  ++lg  ++f + a++ l afv+  ++l++++++ +  +++ e
  KOO25201.1 469 VGSFLSlnHALGEAGSFALYALINLGAFVF--VWLLVPETKGRQLEDVAE 516
                 5555554466777889***********998..666666665555555554 PP

>> OATP  Organic Anion Transporter Polypeptide (OATP) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.1   1.7e-05       0.1      26      90 ..      75     140 ..      51     184 .. 0.86

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 1.7e-05
                 xxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        OATP  26 tiEkrFklpssts.gliassneignillilfvsYfggrghrPrwigigallmalgslllalPhfis 90 
                  +++r++ p   +  l+a++ +ig+++ ++f s+ ++   r   i i++ ++  gs +lalP  + 
  KOO25201.1  75 DFQRRYHNPDDLTlQLLAATMQIGSVVGSMFASWSADALGRRAAIMISMAVIVAGSAVLALPAVLP 140
                 57888888877553899999******************************************9775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (545 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       573  (0.0319594); expected 358.6 (0.02)
Passed bias filter:                      271  (0.0151152); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.56u 0.29s 00:00:00.85 Elapsed: 00:00:00.44
# Mc/sec: 3717.13
//
Query:       KOO25202.1  [L=604]
Description: voltage-gated ion channel superfamily [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.2e-07   32.0   0.3    3.1e-07   30.7   0.3    1.7  1  EF-hand_7   EF-hand domain pair
      7e-07   28.7   0.3      0.025   14.5   0.1    2.6  2  EF-hand_6   EF-hand domain
    3.4e-05   23.1   0.1    0.00082   18.7   0.2    2.5  2  EF-hand_1   EF hand
     0.0036   17.1   0.1     0.0073   16.1   0.1    1.5  1  EF-hand_10  EF hand
     0.0073   16.1   0.3      0.016   15.0   0.3    1.6  1  EF-hand_8   EF-hand domain pair
  ------ inclusion threshold ------
      0.062   12.8   0.3       0.13   11.8   0.3    1.5  1  EF-hand_5   EF hand


Domain annotation for each model (and alignments):
>> EF-hand_7  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.7   0.3     1e-10   3.1e-07       4      71 .]     374     435 ..     373     435 .. 0.93

  Alignments for each domain:
  == domain 1  score: 30.7 bits;  conditional E-value: 1e-10
   EF-hand_7   4 lkeaFkelDtdgdgyldkeellrllrkifqgagegsklsdeelellfkefDtdkdGvisfdEFlklyr 71 
                 l ++F+ +D  ++g +d  +l+++l+      + + +l   e  +l+k  D dk+G++ f+EF+k++r
  KOO25202.1 374 LLRVFRRYDPYDTGCMDGHQLRSALK------DMELDLQTPEAMDLLKSADEDKNGTVEFSEFRKFVR 435
                 5689**********************......88888899999**********************986 PP

>> EF-hand_6  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.7   0.0   6.6e-05       0.2       2      28 ..     374     400 ..     373     405 .. 0.90
   2 !   14.5   0.1   8.5e-06     0.025       3      27 ..     411     435 ..     409     442 .. 0.85

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 6.6e-05
   EF-hand_6   2 lreaFklfDkdgdGkidaeElrkalrk 28 
                 l ++F+ +D  ++G+ d ++lr+al++
  KOO25202.1 374 LLRVFRRYDPYDTGCMDGHQLRSALKD 400
                 6789*********************95 PP

  == domain 2  score: 14.5 bits;  conditional E-value: 8.5e-06
   EF-hand_6   3 reaFklfDkdgdGkidaeElrkalr 27 
                 +++ k  D d++G++ ++E+rk+ r
  KOO25202.1 411 MDLLKSADEDKNGTVEFSEFRKFVR 435
                 5677889***************998 PP

>> EF-hand_1  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.6   0.0     0.081   2.4e+02       3      28 ..     375     400 ..     373     401 .. 0.87
   2 !   18.7   0.2   2.8e-07   0.00082       3      28 ..     411     436 ..     409     437 .. 0.87

  Alignments for each domain:
  == domain 1  score: 1.6 bits;  conditional E-value: 0.081
                 HHHHHHHTTTSSSEEEHHHHHHHHHH CS
   EF-hand_1   3 keiFrefDkDgdGkIdfeEfkellkk 28 
                  ++Fr +D   +G +d  +++++lk+
  KOO25202.1 375 LRVFRRYDPYDTGCMDGHQLRSALKD 400
                 57899999999999999999999997 PP

  == domain 2  score: 18.7 bits;  conditional E-value: 2.8e-07
                 HHHHHHHTTTSSSEEEHHHHHHHHHH CS
   EF-hand_1   3 keiFrefDkDgdGkIdfeEfkellkk 28 
                  ++ + +D D++G+++f+Ef+++++ 
  KOO25202.1 411 MDLLKSADEDKNGTVEFSEFRKFVRL 436
                 677899****************9985 PP

>> EF-hand_10  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.1   2.5e-06    0.0073       7      50 .]     394     437 ..     389     437 .. 0.93

  Alignments for each domain:
  == domain 1  score: 16.1 bits;  conditional E-value: 2.5e-06
  EF-hand_10   7 vkrlLreiNievddeYAekLFkkcDkSksgrLegeEieeFyklL 50 
                 +++ L+++ ++++   A  L k +D+ k+g+ e +E+ +F +lL
  KOO25202.1 394 LRSALKDMELDLQTPEAMDLLKSADEDKNGTVEFSEFRKFVRLL 437
                 7788*************************************987 PP

>> EF-hand_8  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.3   5.4e-06     0.016       2      52 ..     386     434 ..     385     437 .. 0.89

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 5.4e-06
   EF-hand_8   2 kgkItreelrrilrilglkkglseeevdilfrefDtdgdGkisfeEFcvll 52 
                 +g+++ + lr++l+ + l   l   e+ +l++ +D+d++G++ f EF  ++
  KOO25202.1 386 TGCMDGHQLRSALKDMELD--LQTPEAMDLLKSADEDKNGTVEFSEFRKFV 434
                 79999999***99886655..99999*********************9887 PP

>> EF-hand_5  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.3   4.3e-05      0.13       3      25 .]     412     434 ..     411     434 .. 0.91

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 4.3e-05
                 HHHHHH-SS-SSCE-HHHHHHHH CS
   EF-hand_5   3 dtFqaiDlNgDGkIskeELktlv 25 
                 d+++ +D ++ G++ ++E++++v
  KOO25202.1 412 DLLKSADEDKNGTVEFSEFRKFV 434
                 568899***************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (604 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       854  (0.0476323); expected 358.6 (0.02)
Passed bias filter:                      644  (0.0359195); expected 358.6 (0.02)
Passed Vit filter:                        50  (0.00278878); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.62u 0.29s 00:00:00.90 Elapsed: 00:00:00.44
# Mc/sec: 4099.08
//
Query:       KOO25203.1  [L=92]
Description: hypothetical protein Ctob_009462 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (92 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       226  (0.0126053); expected 358.6 (0.02)
Passed bias filter:                      205  (0.011434); expected 358.6 (0.02)
Passed Vit filter:                        12  (0.000669307); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.24s 00:00:00.60 Elapsed: 00:00:00.39
# Mc/sec: 705.34
//
Query:       KOO25204.1  [L=274]
Description: hypothetical protein Ctob_009461, partial [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (274 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       234  (0.0130515); expected 358.6 (0.02)
Passed bias filter:                      184  (0.0102627); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.22s 00:00:00.59 Elapsed: 00:00:00.36
# Mc/sec: 2294.15
//
Query:       KOO25205.1  [L=332]
Description: wd repeat-containing protein 5 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.1e-64  212.8  19.6    9.4e-11   42.1   0.7    7.4  7  WD40           WD domain, G-beta repeat
    1.2e-23   83.2   0.1    7.9e-06   26.1   0.0    6.3  6  ANAPC4_WD40    Anaphase-promoting complex subunit 4 WD40 doma
    1.7e-14   53.4   8.3      0.011   14.4   0.9    5.6  6  Nup160         Nucleoporin Nup120/160
    4.6e-09   36.4   0.0    0.00076   19.4   0.0    3.5  3  eIF2A          Eukaryotic translation initiation factor eIF2A
    6.5e-08   31.9   6.7       0.28   10.1   0.1    5.1  5  Ge1_WD40       WD40 region of Ge1, enhancer of mRNA-decapping
    2.6e-07   29.9   0.3        0.4    9.5   0.0    4.1  4  PALB2_WD40     Partner and localizer of BRCA2 WD40 domain
    1.8e-05   24.2   0.0      0.011   15.1   0.0    3.1  4  WD40_like      WD40-like domain
    0.00033   19.3   0.0      0.083   11.4   0.0    2.8  3  Cytochrom_D1   Cytochrome D1 heme domain
    0.00048   19.3   0.0       0.88    8.6   0.0    3.9  5  VID27          VID27 C-terminal WD40-like domain
     0.0043   15.4   0.0       0.22    9.8   0.0    2.1  2  Frtz           WD repeat-containing and planar cell polarity 
  ------ inclusion threshold ------
      0.018   14.4   0.2       0.37   10.1   0.0    2.8  3  Nbas_N         Neuroblastoma-amplified sequence, N terminal
      0.033   13.0   0.9          3    6.5   0.0    3.4  3  Nucleoporin_N  Nup133 N terminal like


Domain annotation for each model (and alignments):
>> WD40  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.4   0.2   3.6e-11   5.4e-08       3      37 ..      20      55 ..      18      55 .. 0.93
   2 !   42.1   0.7   6.3e-14   9.4e-11       1      38 []      60      98 ..      60      98 .. 0.97
   3 !   40.7   0.0   1.7e-13   2.5e-10       1      38 []     102     140 ..     102     140 .. 0.96
   4 !   36.7   0.3   3.3e-12   4.9e-09       2      38 .]     145     182 ..     144     182 .. 0.95
   5 !   25.0   0.0   1.6e-08   2.4e-05       1      38 []     186     225 ..     186     225 .. 0.91
   6 !   24.3   0.1   2.7e-08     4e-05       2      38 .]     230     271 ..     229     271 .. 0.80
   7 !   19.4   0.0   9.2e-07    0.0014       2      37 ..     276     315 ..     275     316 .. 0.79

  Alignments for each domain:
  == domain 1  score: 33.4 bits;  conditional E-value: 3.6e-11
                EEEEEESSSS.EEEEEEETTSSEEEEEETTSEEEEE CS
        WD40  3 clrtltGHss.vtslafspdgawlasGsdDgtvriW 37
                c++tl++H+  v+s++ s dg+wlas+s D tvr+W
  KOO25205.1 20 CTQTLSAHKRaVSSVKISADGRWLASSSADMTVRLW 55
                99******556************************* PP

  == domain 2  score: 42.1 bits;  conditional E-value: 6.3e-14
                TEEEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40  1 gqclrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38
                ++c ++l GH ++v++ +fs d+++las+sdD+t+r+Wd
  KOO25205.1 60 WKCAHVLQGHtQGVNDACFSADSKYLASASDDRTIRLWD 98
                699*******999*************************9 PP

  == domain 3  score: 40.7 bits;  conditional E-value: 1.7e-13
                 TEEEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40   1 gqclrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 
                 g+ l+tl+GH ++v ++afsp g++lasGs D ++r+Wd
  KOO25205.1 102 GKMLKTLRGHaNFVFCVAFSPQGNLLASGSFDESLRVWD 140
                 57799*****999*************************9 PP

  == domain 4  score: 36.7 bits;  conditional E-value: 3.3e-12
                 EEEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40   2 qclrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 
                 +cl++l +H ++v+++ fs dg++++sGs+Dg +riWd
  KOO25205.1 145 RCLKILPAHsDPVSGVHFSYDGTLIVSGSYDGLCRIWD 182
                 69*******666*************************9 PP

  == domain 5  score: 25.0 bits;  conditional E-value: 1.6e-08
                 TEEEEEEESS.SS.EEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40   1 gqclrtltGH.ss.vtslafspdgawlasGsdDgtvriWd 38 
                 gqcl+tl    ++ v+ ++fsp+g+++++G  D+t+r+W+
  KOO25205.1 186 GQCLKTLIDDdNPpVSFVKFSPNGRFILAGLLDNTLRLWN 225
                 799***99776678****************88*******8 PP

  == domain 6  score: 24.3 bits;  conditional E-value: 2.7e-08
                 EEEEEEESS.SS.EEEEE...EETTSSEEEEEETTSEEEEEE CS
        WD40   2 qclrtltGH.ss.vtsla...fspdgawlasGsdDgtvriWd 38 
                 +clrt++GH +   +++a   +  +++++++Gs+Dg+v +Wd
  KOO25205.1 230 KCLRTYSGHkNAkFCCFAdfvTVGEQHMVVAGSEDGKVCLWD 271
                 8********7557677767666666677999**********9 PP

  == domain 7  score: 19.4 bits;  conditional E-value: 9.2e-07
                 EEEEEEESSSS.EEEEEEETTSSEEEEEE...TTSEEEEE CS
        WD40   2 qclrtltGHss.vtslafspdgawlasGs...dDgtvriW 37 
                 q+l+tl+GH++ v ++a +p+  ++a+G+   d +++riW
  KOO25205.1 276 QLLQTLEGHTDvVLGVAAHPSRELIATGGtdkDLRSIRIW 315
                 789******8857***************933335555555 PP

>> ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.9   0.2    0.0003      0.45      35      80 ..      25      70 ..      16      74 .. 0.87
   2 !   19.7   0.0   5.4e-07    0.0008      36      89 ..      68     120 ..      60     121 .. 0.89
   3 !   26.1   0.0   5.3e-09   7.9e-06       2      77 ..     119     193 ..     118     203 .. 0.93
   4 !   15.4   0.0   1.2e-05     0.017      38      86 ..     197     245 ..     192     248 .. 0.89
   5 ?    5.4   0.0     0.016        23      50      81 ..     255     286 ..     252     294 .. 0.87
   6 ?   -1.0   0.0       1.5   2.3e+03       5      24 ..     295     314 ..     291     321 .. 0.85

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.0003
  ANAPC4_WD40 35 dkedsevrsLaWkpdgklLavaysdgevrlldaesgkvvhslsvks 80
                 +++++ v+s++ + dg+ La + +d +vrl    + k+ h l+ ++
   KOO25205.1 25 SAHKRAVSSVKISADGRWLASSSADMTVRLWITTTWKCAHVLQGHT 70
                 678999**************************99999999987665 PP

  == domain 2  score: 19.7 bits;  conditional E-value: 5.4e-07
  ANAPC4_WD40  36 kedsevrsLaWkpdgklLavaysdgevrlldaesgkvvhslsvksekavtclgW 89 
                  ++ + v++ +++ d k La a +d ++rl d+++gk++++l+ +++  v c+ +
   KOO25205.1  68 GHTQGVNDACFSADSKYLASASDDRTIRLWDVSTGKMLKTLRGHAN-FVFCVAF 120
                  567889999********************************99988.5888876 PP

  == domain 3  score: 26.1 bits;  conditional E-value: 5.3e-09
  ANAPC4_WD40   2 swcptmDLiAlatedgellvfRlngqrvwtleedkedsevrsLaWkpdgklLavaysdgevrlldaesgkvvhsls 77 
                  +++p+ +L+A ++ d++l+v  ++  r  ++  ++++  v++++++ dg+l++ +  dg +r+ d  +g+++++l 
   KOO25205.1 119 AFSPQGNLLASGSFDESLRVWDVKTARCLKI-LPAHSDPVSGVHFSYDGTLIVSGSYDGLCRIWDTATGQCLKTLI 193
                  79*****************************.799999*********************************99875 PP

  == domain 4  score: 15.4 bits;  conditional E-value: 1.2e-05
  ANAPC4_WD40  38 dsevrsLaWkpdgklLavaysdgevrlldaesgkvvhslsvksekavtc 86 
                  +  v+ ++++p+g+++  +  d+++rl +  + k+++++s +++ + +c
   KOO25205.1 197 NPPVSFVKFSPNGRFILAGLLDNTLRLWNFRKNKCLRTYSGHKNAKFCC 245
                  5678999********************************9999877766 PP

  == domain 5  score: 5.4 bits;  conditional E-value: 0.016
  ANAPC4_WD40  50 gklLavaysdgevrlldaesgkvvhslsvkse 81 
                   ++ + + +dg+v l d ++++++++l+ +++
   KOO25205.1 255 QHMVVAGSEDGKVCLWDLQTKQLLQTLEGHTD 286
                  68889999****************99987766 PP

  == domain 6  score: -1.0 bits;  conditional E-value: 1.5
  ANAPC4_WD40   5 ptmDLiAlatedgellvfRl 24 
                  p+++LiA + +d++l+  R+
   KOO25205.1 295 PSRELIATGGTDKDLRSIRI 314
                  88999999999999988886 PP

>> Nup160  Nucleoporin Nup120/160
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.3       0.3   4.4e+02     229     254 ..      39      64 ..      25      70 .. 0.79
   2 !   14.4   0.9   7.3e-06     0.011     224     255 ..      76     107 ..      50     112 .. 0.83
   3 !   10.0   0.0   0.00016      0.24     229     254 ..     123     148 ..     110     154 .. 0.82
   4 !    9.5   0.0   0.00023      0.34     228     257 ..     163     194 ..     151     201 .. 0.83
   5 !    9.9   0.0   0.00018      0.26     231     255 ..     210     234 ..     197     242 .. 0.84
   6 !    9.4   0.0   0.00024      0.35     222     256 ..     246     281 ..     235     305 .. 0.87

  Alignments for each domain:
  == domain 1  score: -0.8 bits;  conditional E-value: 0.3
                 TTTEEEEEETT-EEEEEETTTTEEEE CS
      Nup160 229 gqtylfalsrdgkLrvWnlltgkcla 254
                 +   l++ s d ++r+W ++t kc+ 
  KOO25205.1  39 DGRWLASSSADMTVRLWITTTWKCAH 64 
                 666788999********999999986 PP

  == domain 2  score: 14.4 bits;  conditional E-value: 7.3e-06
                 .....TTTEEEEEETT-EEEEEETTTTEEEEE CS
      Nup160 224 avveigqtylfalsrdgkLrvWnlltgkclat 255
                 a+ +++++yl+++s d+++r+W+++tgk l t
  KOO25205.1  76 ACFSADSKYLASASDDRTIRLWDVSTGKMLKT 107
                 455559**********************9987 PP

  == domain 3  score: 10.0 bits;  conditional E-value: 0.00016
                 TTTEEEEEETT-EEEEEETTTTEEEE CS
      Nup160 229 gqtylfalsrdgkLrvWnlltgkcla 254
                 + ++l++ s d  LrvW+++t++cl 
  KOO25205.1 123 QGNLLASGSFDESLRVWDVKTARCLK 148
                 78999999****************86 PP

  == domain 4  score: 9.5 bits;  conditional E-value: 0.00023
                 ..TTTEEEEEETT-EEEEEETTTTEEEEE.EE CS
      Nup160 228 i.gqtylfalsrdgkLrvWnlltgkclat.id 257
                 + + t++++ s dg  r+W+++tg+cl t id
  KOO25205.1 163 SyDGTLIVSGSYDGLCRIWDTATGQCLKTlID 194
                 357789999999*****************888 PP

  == domain 5  score: 9.9 bits;  conditional E-value: 0.00018
                 TEEEEEETT-EEEEEETTTTEEEEE CS
      Nup160 231 tylfalsrdgkLrvWnlltgkclat 255
                  +++a  +d++Lr+Wn + +kcl+t
  KOO25205.1 210 RFILAGLLDNTLRLWNFRKNKCLRT 234
                 6899999****************99 PP

  == domain 6  score: 9.4 bits;  conditional E-value: 0.00024
                 ET......TTTEEEEEETT-EEEEEETTTTEEEEEE CS
      Nup160 222 avavvei.gqtylfalsrdgkLrvWnlltgkclati 256
                 + ++v++ +q +++a s dgk+ +W+l+t+++l t 
  KOO25205.1 246 FADFVTVgEQHMVVAGSEDGKVCLWDLQTKQLLQTL 281
                 5677888899**********************9984 PP

>> eIF2A  Eukaryotic translation initiation factor eIF2A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.4   0.0   5.1e-07   0.00076      62     160 ..      73     171 ..      44     175 .. 0.78
   2 !    9.4   0.0   0.00059      0.89      76     145 ..     169     240 ..     167     249 .. 0.72
   3 ?    4.6   0.0     0.018        26      71     121 ..     253     306 ..     248     324 .. 0.70

  Alignments for each domain:
  == domain 1  score: 19.4 bits;  conditional E-value: 5.1e-07
                 EEEEEE-TTSS-EEEEESSSSCEEEEEECSCEEEEEEEEES--EEE...E-TTSSEEEEE-TTSSS-EEEEEETT..TTEEEEEEE-TT--EEEE-TTS CS
       eIF2A  62 ihdvaWspkskefaviyGkmpakvslfdlkvkviskleeqkrNtif...fspkgklvllaGfgnlaGeleiwdvk..kkkkiakaeaanatlvewspdg 155
                 + d++ s +sk +a      ++++ l+d+   ++ k+ + ++N +f   fsp+g+l++ + f +    l +wdvk  ++ ki  a++   + v +s+dg
  KOO25205.1  73 VNDACFSADSKYLA--SASDDRTIRLWDVSTGKMLKTLRGHANFVFcvaFSPQGNLLASGSFDES---LRVWDVKtaRCLKILPAHSDPVSGVHFSYDG 166
                 66666666665443..4466889******98888888888899654444************9987...*******6666777778888999******** PP

                 SEEEE CS
       eIF2A 156 ryvlT 160
                 ++++ 
  KOO25205.1 167 TLIVS 171
                 *9985 PP

  == domain 2  score: 9.4 bits;  conditional E-value: 0.00059
                 EEESSSSCEEEEEECS....CEEEEEEEEES--EEEE-TTSSEEEEE-TTSSS-EEEEEETTTTEEEEEEE.-TT CS
       eIF2A  76 viyGkmpakvslfdlk....vkviskleeqkrNtiffspkgklvllaGfgnlaGeleiwdvkkkkkiakae.aan 145
                 ++ G  +    ++d+     +k + + ++ +   ++fsp+g+++l + + n+   l +w+  k k++ ++  ++n
  KOO25205.1 169 IVSGSYDGLCRIWDTAtgqcLKTLIDDDNPPVSFVKFSPNGRFILAGLLDNT---LRLWNFRKNKCLRTYSgHKN 240
                 6777777777777775444455566667777889999999999998888887...99999999998888752444 PP

  == domain 3  score: 4.6 bits;  conditional E-value: 0.018
                 SS-EEEEESSSSCEEEEEECSCEEEEEEEEES--EE...EE-TTSSEEEEE-TT CS
       eIF2A  71 skefaviyGkmpakvslfdlkvkviskleeqkrNti...ffspkgklvllaGfg 121
                 +++ +v+ G  + kv l+dl+ k++ ++ e +   +     +p+ +l++++G  
  KOO25205.1 253 GEQHMVVAGSEDGKVCLWDLQTKQLLQTLEGHTDVVlgvAAHPSRELIATGGTD 306
                 677899999999999999999888887777766654111466777777777764 PP

>> Ge1_WD40  WD40 region of Ge1, enhancer of mRNA-decapping protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.1   0.2    0.0061       9.1     187     214 ..      27      55 ..      14      64 .. 0.81
   2 !   10.1   0.1   0.00019      0.28     185     217 ..      67     100 ..      57     108 .. 0.85
   3 !    5.7   0.0     0.004         6     185     217 ..     109     142 ..     102     149 .. 0.83
   4 !    5.5   0.0    0.0045       6.8     187     215 ..     153     182 ..     142     191 .. 0.83
   5 !    5.0   0.1    0.0068        10     190     285 ..     200     283 ..     187     295 .. 0.76

  Alignments for each domain:
  == domain 1  score: 5.1 bits;  conditional E-value: 0.0061
    Ge1_WD40 187 hs.liveaafspdGtalatasedGevkff 214
                 h   +++  +s+dG  la +s+d +v+++
  KOO25205.1  27 HKrAVSSVKISADGRWLASSSADMTVRLW 55 
                 43368888999999999999999999988 PP

  == domain 2  score: 10.1 bits;  conditional E-value: 0.00019
    Ge1_WD40 185 eehs.liveaafspdGtalatasedGevkffqvy 217
                 + h+  + +a fs+d   la as d +++++ v 
  KOO25205.1  67 QGHTqGVNDACFSADSKYLASASDDRTIRLWDVS 100
                 55554799***********************986 PP

  == domain 3  score: 5.7 bits;  conditional E-value: 0.004
    Ge1_WD40 185 eehs.liveaafspdGtalatasedGevkffqvy 217
                 + h+  + + afsp G  la  s d  ++ + v 
  KOO25205.1 109 RGHAnFVFCVAFSPQGNLLASGSFDESLRVWDVK 142
                 5666478999********************9985 PP

  == domain 4  score: 5.5 bits;  conditional E-value: 0.0045
    Ge1_WD40 187 hs.liveaafspdGtalatasedGevkffq 215
                 hs  ++   fs dGt +   s dG+ + + 
  KOO25205.1 153 HSdPVSGVHFSYDGTLIVSGSYDGLCRIWD 182
                 454688889*****************9996 PP

  == domain 5  score: 5.0 bits;  conditional E-value: 0.0068
    Ge1_WD40 190 iveaafspdGtalatasedGevkffqvyledeeeprCLheWkPhdGkslssllfldnhkeesdeqfWrfaitgadnnselklWscelWtClqtikf 285
                 ++   fsp+G  + +   d +++++       ++++CL  +  h+  + +++   d ++        ++++ + +++  + lW  ++ + lqt++ 
  KOO25205.1 200 VSFVKFSPNGRFILAGLLDNTLRLWN-----FRKNKCLRTYSGHKNAKFCCF--ADFVTVGE-----QHMVVAGSEDGKVCLWDLQTKQLLQTLEG 283
                 56667999999999999999998885.....57899********99999995..44443332.....46666666777888999999999998875 PP

>> PALB2_WD40  Partner and localizer of BRCA2 WD40 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.2   0.0     0.012        18     193     218 ..      85     110 ..      19     129 .. 0.84
   2 ?    3.7   0.0     0.016        24     303     345 ..     135     176 ..     123     180 .. 0.78
   3 !    9.0   0.0   0.00038      0.57     302     346 ..     176     220 ..     168     225 .. 0.88
   4 !    9.5   0.0   0.00027       0.4     187     217 ..     252     282 ..     239     292 .. 0.87

  Alignments for each domain:
  == domain 1  score: 4.2 bits;  conditional E-value: 0.012
  PALB2_WD40 193 llgttvlnniviWnlktGqllkkiei 218
                 l +++++  i +W++ tG++lk+++ 
  KOO25205.1  85 LASASDDRTIRLWDVSTGKMLKTLRG 110
                 55667788999***********9974 PP

  == domain 2  score: 3.7 bits;  conditional E-value: 0.016
  PALB2_WD40 303 aiavWdlllghctalllpesdesWslvrWsgtdsqllaGqkdG 345
                 ++ vWd+  ++c  +l+++sd   s v++s   + +++G  dG
  KOO25205.1 135 SLRVWDVKTARCLKILPAHSDP-VSGVHFSYDGTLIVSGSYDG 176
                 5789********9999999986.57899999999999988888 PP

  == domain 3  score: 9.0 bits;  conditional E-value: 0.00038
  PALB2_WD40 302 GaiavWdlllghctalllpesdesWslvrWsgtdsqllaGqkdGs 346
                 G   +Wd   g+c   l+   +   s+v++s     +laG  d +
  KOO25205.1 176 GLCRIWDTATGQCLKTLIDDDNPPVSFVKFSPNGRFILAGLLDNT 220
                 55679***********************************88766 PP

  == domain 4  score: 9.5 bits;  conditional E-value: 0.00027
  PALB2_WD40 187 eGekdallgttvlnniviWnlktGqllkkie 217
                  Ge+  +++ + + ++ +W+l+t qll+++e
  KOO25205.1 252 VGEQHMVVAGSEDGKVCLWDLQTKQLLQTLE 282
                 499*************************986 PP

>> WD40_like  WD40-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.0       1.2   1.8e+03       8      33 ..      78     103 ..      31     110 .. 0.63
   2 !   10.2   0.0   0.00023      0.34       3      63 ..     115     176 ..     113     177 .. 0.89
   3 !   15.1   0.0     7e-06     0.011       4     106 ..     158     269 ..     155     286 .. 0.73
   4 ?    1.3   0.0      0.11   1.7e+02      12      46 ..     255     289 ..     248     303 .. 0.82

  Alignments for each domain:
  == domain 1  score: -2.0 bits;  conditional E-value: 1.2
   WD40_like   8 iskkgslilyGgkddkctvlklesle 33 
                 +s ++++++  ++d ++++ ++ +++
  KOO25205.1  78 FSADSKYLASASDDRTIRLWDVSTGK 103
                 35556666666666666666666555 PP

  == domain 2  score: 10.2 bits;  conditional E-value: 0.00023
   WD40_like   3 iYsidiskkgslilyGgkddkctvlkleslesvsivesfedSvifvkllddd.lilvvtlDG 63 
                 ++ + +s++g+l++ G+ d+ ++v ++++     i+   +d v  v +  d  li+ ++ DG
  KOO25205.1 115 VFCVAFSPQGNLLASGSFDESLRVWDVKTARCLKILPAHSDPVSGVHFSYDGtLIVSGSYDG 176
                 78899*****************************************9987762555578888 PP

  == domain 3  score: 15.1 bits;  conditional E-value: 7e-06
   WD40_like   4 YsidiskkgslilyGgkddkctvlklesl.esvsivesfedSvifvkllddd.lilvvtlDGtillslleneeevenekieedistvkvid......dk 94 
                   + +s +g+li+ G+ d  c++ ++ ++ ++++++++ +  v fvk+  +   il + lD t+ l  +++++  ++ + + +  +++  d      ++
  KOO25205.1 158 SGVHFSYDGTLIVSGSYDGLCRIWDTATGqCLKTLIDDDNPPVSFVKFSPNGrFILAGLLDNTLRLWNFRKNKCLRTYSGHKNAKFCCFADfvtvgeQH 256
                 56899********************998626789**************999846777889****99999999977777766666655543211111133 PP

   WD40_like  95 lli.GtnkGsiyv 106
                 +++ G++ G++ +
  KOO25205.1 257 MVVaGSEDGKVCL 269
                 3332666666655 PP

  == domain 4  score: 1.3 bits;  conditional E-value: 0.11
   WD40_like  12 gslilyGgkddkctvlkleslesvsivesfedSvi 46 
                  ++++ G++d k+ + +l+++++ + +e+ +d v+
  KOO25205.1 255 QHMVVAGSEDGKVCLWDLQTKQLLQTLEGHTDVVL 289
                 46788888999999999999998888888888775 PP

>> Cytochrom_D1  Cytochrome D1 heme domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.0      0.32   4.8e+02      40      57 ..      33      50 ..      30      89 .. 0.49
   2 !   11.4   0.0   5.5e-05     0.083      12     111 ..      89     188 ..      80     243 .. 0.84
   3 ?    3.9   0.0      0.01        15       7      68 ..     257     318 ..     252     329 .. 0.83

  Alignments for each domain:
  == domain 1  score: -1.0 bits;  conditional E-value: 0.32
                  EEE-TT.SSEEEEEETTS CS
  Cytochrom_D1 40 srvfasdgRyvyvigRDg 57
                  s++ + dgR++   + D 
    KOO25205.1 33 SVKISADGRWLASSSADM 50
                  444455555554444444 PP

  == domain 2  score: 11.4 bits;  conditional E-value: 5.5e-05
                   GGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT.SSEEEEEETTSEEEEEESSSSSEEEEEE-SSEEEE.EEE--TTSEEEEEEEETTEEEEEETT CS
  Cytochrom_D1  12 rdagkvalldgdskeilavletgyalHisrvfasdgRyvyvigRDgkvtliDLwakeivaevkiGlnars.vavSqddryvivgnYlPgqlvildae 107
                   +d+  ++l d ++ + l++l ++ +    + f+++g ++   + D  + + D+ + + ++ + + ++  s v  S+d+ +++ g+Y  g   i d+ 
    KOO25205.1  89 SDDRTIRLWDVSTGKMLKTLRGHANFVFCVAFSPQGNLLASGSFDESLRVWDVKTARCLKILPAHSDPVSgVHFSYDGTLIVSGSYD-GLCRIWDTA 184
                   68899999******************999*****9999999999*************999999999976538999**********96.666777766 PP

                   T--E CS
  Cytochrom_D1 108 tLel 111
                   t + 
    KOO25205.1 185 TGQC 188
                   6555 PP

  == domain 3  score: 3.9 bits;  conditional E-value: 0.01
                   EEEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT.SSEEEEEETTSEEEEEESSSSS CS
  Cytochrom_D1   7 fvvverdagkvalldgdskeilavletgyalHisrvfasdgRyvyvigRDgkvtliDLwake 68 
                    vv  +++gkv l d ++k+ l++le++ ++  ++   +   ++ + g D  +  i +w+++
    KOO25205.1 257 MVVAGSEDGKVCLWDLQTKQLLQTLEGHTDVVLGVAAHPSRELIATGGTDKDLRSIRIWEHT 318
                   5788899************************9998888866777788888888888888765 PP

>> VID27  VID27 C-terminal WD40-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.0   0.0      0.03        45     185     208 ..      25      48 ..      19      83 .. 0.80
   2 ?   -1.2   0.0      0.55   8.2e+02     155     175 ..      79      99 ..      64     108 .. 0.78
   3 !    8.6   0.0   0.00059      0.88     152     208 ..     118     174 ..     104     187 .. 0.82
   4 ?    3.8   0.0     0.017        25     164     207 ..     172     216 ..     168     231 .. 0.83
   5 ?   -1.3   0.0       0.6     9e+02     154     186 ..     251     283 ..     229     305 .. 0.63

  Alignments for each domain:
  == domain 1  score: 3.0 bits;  conditional E-value: 0.03
       VID27 185 PalgdpiigldvsadGrwvlatck 208
                  a   ++  +++sadGrw+ + + 
  KOO25205.1  25 SAHKRAVSSVKISADGRWLASSSA 48 
                 556678999*********977654 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 0.55
       VID27 155 ttekGyiavasekGdirlfdr 175
                 ++++ y+a as+   irl+d 
  KOO25205.1  79 SADSKYLASASDDRTIRLWDV 99 
                 567889999999999999994 PP

  == domain 3  score: 8.6 bits;  conditional E-value: 0.00059
       VID27 152 avattekGyiavasekGdirlfdrlginaktalPalgdpiigldvsadGrwvlatck 208
                  + + +   +a +s    +r++d    +    lPa +dp+ g++ s dG  +++ + 
  KOO25205.1 118 VAFSPQGNLLASGSFDESLRVWDVKTARCLKILPAHSDPVSGVHFSYDGTLIVSGSY 174
                 444444556788999999*********************************998665 PP

  == domain 4  score: 3.8 bits;  conditional E-value: 0.017
       VID27 164 asekGdirlfdr.lginaktalPalgdpiigldvsadGrwvlatc 207
                 +s  G  r++d+  g+  kt +     p+  ++ s +Gr++la  
  KOO25205.1 172 GSYDGLCRIWDTaTGQCLKTLIDDDNPPVSFVKFSPNGRFILAGL 216
                 6778889999973578889***********************975 PP

  == domain 5  score: -1.3 bits;  conditional E-value: 0.6
       VID27 154 attekGyiavasekGdirlfdrlginaktalPa 186
                 +  e+ ++  +se G + l+d   ++   +l  
  KOO25205.1 251 TVGEQHMVVAGSEDGKVCLWDLQTKQLLQTLEG 283
                 233455555568888888888665555555555 PP

>> Frtz  WD repeat-containing and planar cell polarity effector protein Fritz
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.8   0.0   0.00015      0.22     262     351 ..     115     206 ..      73     214 .. 0.89
   2 ?    3.7   0.0      0.01        15     260     292 ..     241     276 ..     223     310 .. 0.68

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.00015
        Frtz 262 vislafnpdedkLllGceDssviLydeer.kitklvkaevvP.sliswhpdsaillvasergelqifDlaLspiriqllsedvePksvldls 351
                 v ++af+p+ + L  G+ D+s+ ++d ++ +  k+  a+  P s + +  d+++++ +s  g  +i+D a     + l+ +d  P s +++s
  KOO25205.1 115 VFCVAFSPQGNLLASGSFDESLRVWDVKTaRCLKILPAHSDPvSGVHFSYDGTLIVSGSYDGLCRIWDTATGQCLKTLIDDDNPPVSFVKFS 206
                 7899**********************8761556666888888345888889999999****************************9999886 PP

  == domain 2  score: 3.7 bits;  conditional E-value: 0.01
        Frtz 260 aqvisla...fnpdedkLllGceDssviLydeerki 292
                 a+ +++a      ++  ++ G+eD++v+L+d ++k 
  KOO25205.1 241 AKFCCFAdfvTVGEQHMVVAGSEDGKVCLWDLQTKQ 276
                 56666663212234556678***********98764 PP

>> Nbas_N  Neuroblastoma-amplified sequence, N terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.0      0.51   7.6e+02      49      74 ..      76     101 ..      51     110 .. 0.72
   2 ?   10.1   0.0   0.00025      0.37     219     261 ..     102     144 ..      65     149 .. 0.82
   3 ?    0.8   0.0      0.16   2.5e+02     230     260 ..     155     185 ..     143     208 .. 0.72

  Alignments for each domain:
  == domain 1  score: -0.8 bits;  conditional E-value: 0.51
      Nbas_N  49 vawshdctllayaestgtvrvfdlvg 74 
                  ++s d   la a    t+r++d+  
  KOO25205.1  76 ACFSADSKYLASASDDRTIRLWDVST 101
                 45677777777777777777777654 PP

  == domain 2  score: 10.1 bits;  conditional E-value: 0.00025
      Nbas_N 219 lklysrkaeekdgvfkmslspdgtllavihfsgklsiwdipsl 261
                  k+        + vf +++sp+g lla   f  +l +wd+ + 
  KOO25205.1 102 GKMLKTLRGHANFVFCVAFSPQGNLLASGSFDESLRVWDVKTA 144
                 55566666677889*************************9765 PP

  == domain 3  score: 0.8 bits;  conditional E-value: 0.16
      Nbas_N 230 dgvfkmslspdgtllavihfsgklsiwdips 260
                 d v  + +s dgtl+    + g   iwd  +
  KOO25205.1 155 DPVSGVHFSYDGTLIVSGSYDGLCRIWDTAT 185
                 4555566777777777777777777777654 PP

>> Nucleoporin_N  Nup133 N terminal like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.4   0.1     0.036        54     199     236 ..      26      63 ..       8      72 .. 0.82
   2 ?    6.5   0.0     0.002         3     213     273 ..      82     141 ..      70     207 .. 0.82
   3 ?   -0.1   0.0       0.2     3e+02      44      71 ..     218     240 ..     205     275 .. 0.71

  Alignments for each domain:
  == domain 1  score: 2.4 bits;  conditional E-value: 0.036
                    --GG-EEEEEEECCTCEEEEEETTSEEEEEEEETTCEE CS
  Nucleoporin_N 199 sereeivqlridssrrilytlsskgvirvydlsasnge 236
                      + ++ +++i+   r+l + s+++++r + ++++   
     KOO25205.1  26 AHKRAVSSVKISADGRWLASSSADMTVRLWITTTWKCA 63 
                    556789999999999***************99988654 PP

  == domain 2  score: 6.5 bits;  conditional E-value: 0.002
                    TCEEEEEETTSEEEEEEEETTCEE-EEEEEEEHHHHHHHH.HHSCHTTTCGCTTT-EEEEE CS
  Nucleoporin_N 213 rrilytlsskgvirvydlsasngesslksdidirqilleaitesliasaplaskslkildi 273
                    ++ l ++s +++ir +d+s+    ++l++++++   ++  +++++  ++ + ++sl+++d+
     KOO25205.1  82 SKYLASASDDRTIRLWDVSTGKMLKTLRGHANFVFCVAF-SPQGNLLASGSFDESLRVWDV 141
                    38999**************66557777777777544442.455555555666666776666 PP

  == domain 3  score: -0.1 bits;  conditional E-value: 0.2
                    TTEEEEEETTSSSS...EEEEEE----S CS
  Nucleoporin_N  44 dnklflWnYnstasspstdtipydgeeh 71 
                    dn l lWn+++++     +  +y+g+++
     KOO25205.1 218 DNTLRLWNFRKNK-----CLRTYSGHKN 240
                    6777777777776.....6666666554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (332 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       442  (0.0246528); expected 358.6 (0.02)
Passed bias filter:                      376  (0.0209716); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.65u 0.28s 00:00:00.93 Elapsed: 00:00:00.47
# Mc/sec: 2104.27
//
Query:       KOO25206.1  [L=280]
Description: hypothetical protein Ctob_009464 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
  ------ inclusion threshold ------
       0.12   12.4   0.0       0.19   11.8   0.0    1.3  1  B12-binding  B12 binding domain
        0.4   10.7   2.5        2.9    8.0   0.3    2.5  3  RcpC         Flp pilus assembly protein RcpC/CpaB
        1.2    9.2  10.4       0.16   12.1   5.3    2.0  2  Shadoo       Shadow of prion protein, neuroprotective


Domain annotation for each model (and alignments):
>> B12-binding  B12 binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   3.1e-05      0.19      40      94 ..      94     150 ..      55     157 .. 0.75

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 3.1e-05
  B12-binding  40 n...edivaairaekpdvvglSalltsqleavkelvellkrirprvkvvvGGahpsld 94 
                         +++++ +  +++gl a  t+ +++v++l+ +l+++ +   v++ G++p+ +
   KOO25206.1  94 RearLSSERRVEHLSRRIIGLEA-TTHAMSKVTALLPRLEQALDSQLVITPGTAPTSA 150
                  1445566789999999*******.**************99999999******999976 PP

>> RcpC  Flp pilus assembly protein RcpC/CpaB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.2   0.1     0.029   1.7e+02      72      97 ..      39      64 ..      21      88 .. 0.70
   2 ?   -2.0   0.0      0.62   3.7e+03      70     103 ..      92     125 ..      75     129 .. 0.67
   3 ?    8.0   0.3   0.00049       2.9      74     115 ..     148     189 ..     122     190 .. 0.80

  Alignments for each domain:
  == domain 1  score: 2.2 bits;  conditional E-value: 0.029
        RcpC 72 kreeedeekkkeaetastvtLevtpe 97
                ++ ++++  +++ ++++t+tL v+p 
  KOO25206.1 39 AAGSSSGAGQSTSSEPETLTLSVPPL 64
                344445555555666778****9985 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 0.62
        RcpC  70 akkreeedeekkkeaetastvtLevtpeqaekLa 103
                 a++++  ++e+++e  + + + Le+t+  ++k++
  KOO25206.1  92 AEREARLSSERRVEHLSRRIIGLEATTHAMSKVT 125
                 3444555555566666667788888888887776 PP

  == domain 3  score: 8.0 bits;  conditional E-value: 0.00049
        RcpC  74 eeedeekkkeaetastvtLevtpeqaekLalaesaGkLslaL 115
                 +++ + ++ + ++a+t  L+++ +  e++ala+  G ++l+L
  KOO25206.1 148 TSAMAPAGPAVNRARTPSLAANRAASEAVALANDLGAMRLVL 189
                 44445555566677889***********************98 PP

>> Shadoo  Shadow of prion protein, neuroprotective
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   5.3   2.7e-05      0.16      32      70 ..       3      43 ..       1      59 [. 0.68
   2 ?   -0.9   0.2      0.26   1.6e+03      68      78 ..     155     165 ..     114     196 .. 0.60

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 2.7e-05
      Shadoo 32 rvrpaprysaags..slrvaaagaaagaaagaaaglaagsg 70
                r rp pr +  g+    r+a +ga+ g aa a+ag aags+
  KOO25206.1  3 RARPRPRQALHGAvgPHRLAVTGASYGLAATATAGSAAGSS 43
                67888887655541168999999988888777777777765 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 0.26
      Shadoo  68 gsgwrraagpg 78 
                 g++  ra  p+
  KOO25206.1 155 GPAVNRARTPS 165
                 33333333332 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (280 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       516  (0.0287802); expected 358.6 (0.02)
Passed bias filter:                      338  (0.0188521); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.43u 0.28s 00:00:00.71 Elapsed: 00:00:00.41
# Mc/sec: 2053.27
//
Query:       KOO25207.1  [L=98]
Description: mitogen-activated protein, partial [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.8e-11   43.9   0.0    2.1e-11   43.7   0.0    1.0  1  Pkinase        Protein kinase domain
    9.3e-08   31.7   0.0    1.1e-07   31.5   0.0    1.0  1  Pkinase_Tyr    Protein tyrosine kinase
  ------ inclusion threshold ------
      0.028   14.2   0.1       0.17   11.7   0.0    2.0  2  SGTA_dimer     Homodimerisation domain of SGTA
       0.15   12.3   0.0       0.24   11.6   0.0    1.4  1  NAD_binding_8  NAD(P)-binding Rossmann-like domain


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.7   0.0   4.7e-15   2.1e-11       1      67 [.      19      85 ..      19      92 .. 0.96

  Alignments for each domain:
  == domain 1  score: 43.7 bits;  conditional E-value: 4.7e-15
                EEEEEEEEEESSEEEEEEEETTTTEEEEEEEEECHCHCHHHHHHHHHHHHHHHHHSCTTB--EEEEE CS
     Pkinase  1 yekleklGeGsfGkVykaveketgkivAvKkikkekakkkkekkvlrEikilkklkhpnivrlyevf 67
                ye+++k+G G++G    a++k+++ +vA+Kkik   ++  + k++lrE+++l+++ h+n+++l +++
  KOO25207.1 19 YEVKKKIGAGAYGLLCAATDKKENIMVAIKKIKDAFDDAIDCKRTLREVRLLQHFTHENVLNLRDIM 85
                899************************************************************9987 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.5   0.0   2.4e-11   1.1e-07       2      71 ..      20      86 ..      19      95 .. 0.87

  Alignments for each domain:
  == domain 1  score: 31.5 bits;  conditional E-value: 2.4e-11
                 EEEEEEEEESSEEEEEEEEETTTTSSEEEEEEEEESTTSSHHH.HHHHHHHHHHHHTS-BTTB--EEEEEE CS
  Pkinase_Tyr  2 elgkklGeGafGkVvegtlkgekekkevkVavKtlkeeateee.keelleeakimkklkhpnivkllgvct 71
                 e++kk+G+Ga+G  + +t k    k+++ Va+K++k+  ++    ++ l+e+++++++ h+n+++l  +++
   KOO25207.1 20 EVKKKIGAGAYGLLCAATDK----KENIMVAIKKIKDAFDDAIdCKRTLREVRLLQHFTHENVLNLRDIML 86
                 5789***********99998....999********988776543899******************998876 PP

>> SGTA_dimer  Homodimerisation domain of SGTA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.2   0.0      0.15   6.7e+02      39      50 ..      11      22 ..      10      29 .. 0.74
   2 ?   11.7   0.0   3.8e-05      0.17      24      42 ..      37      55 ..      35      74 .. 0.87

  Alignments for each domain:
  == domain 1  score: 0.2 bits;  conditional E-value: 0.15
  SGTA_dimer 39 eaFevdkedkaa 50
                e+Fevd+  + +
  KOO25207.1 11 ETFEVDDRYEVK 22
                899999876654 PP

  == domain 2  score: 11.7 bits;  conditional E-value: 3.8e-05
  SGTA_dimer 24 eDdaESleVAiqCIaeaFe 42
                 D++E++ VAi  I++aF+
  KOO25207.1 37 TDKKENIMVAIKKIKDAFD 55
                69****************7 PP

>> NAD_binding_8  NAD(P)-binding Rossmann-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   5.4e-05      0.24       2      22 ..      25      45 ..      25      52 .. 0.85

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 5.4e-05
                   E--SHHHHHHHHHHHCCTEEE CS
  NAD_binding_8  2 vGaGlsGlvaAylLakagfdv 22
                   +GaG+ Gl++A++ +k+++ v
     KOO25207.1 25 IGAGAYGLLCAATDKKENIMV 45
                   8***********988877665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (98 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       721  (0.0402142); expected 358.6 (0.02)
Passed bias filter:                      572  (0.0319036); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.37u 0.28s 00:00:00.65 Elapsed: 00:00:00.42
# Mc/sec: 705.59
//
Query:       KOO25208.1  [L=210]
Description: hypothetical protein Ctob_012426 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.022   14.6   5.2      0.046   13.6   5.2    1.6  1  TAT_signal  TAT (twin-arginine translocation) pathway signal 


Domain annotation for each model (and alignments):
>> TAT_signal  TAT (twin-arginine translocation) pathway signal sequence
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   5.2   2.6e-06     0.046       2      23 ..      23      44 ..      22      47 .. 0.81

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 2.6e-06
  TAT_signal  2 lSRRdFLKgsAAaaAAaalggc 23
                lSRR++L ++A aaAA a+  +
  KOO25208.1 23 LSRRSLLSTAATAAAAIAATPA 44
                7*******99999999886654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (210 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       552  (0.0307881); expected 358.6 (0.02)
Passed bias filter:                      453  (0.0252663); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.27s 00:00:00.69 Elapsed: 00:00:00.41
# Mc/sec: 1523.73
//
Query:       KOO25209.1  [L=429]
Description: vacuolar sorting protein 9 domain-containing protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.2e-11   43.7   0.0    3.4e-11   43.1   0.0    1.2  1  PX        PX domain
    2.5e-10   40.5   0.0    5.7e-10   39.3   0.0    1.5  1  VPS9      Vacuolar sorting protein 9 (VPS9) domain


Domain annotation for each model (and alignments):
>> PX  PX domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.1   0.0   3.8e-15   3.4e-11      20     110 ..      34     135 ..       9     137 .. 0.87

  Alignments for each domain:
  == domain 1  score: 43.1 bits;  conditional E-value: 3.8e-15
                 EEEEEEEEETTS....SSEEEEEEEHHHHHHHHHHHHHHHTTSTSTSSSTSGSSSSS.........CTTSHHHHHHHHHHHHHHHHHHHTSCHHHHSHH CS
          PX  20 syylyevelktg....akewtvkRrYsdFeeLhskLlrkfprvkiPplPkkvlfgsv.........rkkdeefiekrrkgLeeyLqrllnhpelrnsev 105
                 + y+++v+l +       ew+v RrYs+F + h  L + f    +P+lP+k +++s+            d+e i++r   L++yL++ll  p ++ +  
  KOO25209.1  34 TKYIIHVSLPSAgsavPLEWQVARRYSHFRSNHAALSSMFN--NLPKLPPKGMWDSKglssssaglAPPDPELIASRMVLLDAYLKQLLAIPAISGCTQ 130
                 445666666666999999***********************..9***********98*********9999***************************** PP

                 HHHHH CS
          PX 106 lteFL 110
                 +++FL
  KOO25209.1 131 MRTFL 135
                 ****9 PP

>> VPS9  Vacuolar sorting protein 9 (VPS9) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.3   0.0   6.4e-14   5.7e-10       1      67 [.     356     426 ..     356     427 .. 0.92

  Alignments for each domain:
  == domain 1  score: 39.3 bits;  conditional E-value: 6.4e-14
        VPS9   1 leqaseeLkklseaksPreKlkcllrtieeiteav....skseegeslgaDdlLPiliyviikssppnlys 67 
                 +  as eL+++   ++Pr K++c+++++ ++ + +         + +lgaD+l+P+++yv+++++pp l s
  KOO25209.1 356 WAAASAELRQIALRRTPRAKMDCVMQCVLQLKQGLleclGAVGGAGPLGADELFPVFVYVVLSCNPPPLAS 426
                 6789************************999888888888888889********************99876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (429 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       276  (0.0153941); expected 358.6 (0.02)
Passed bias filter:                      231  (0.0128842); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.44u 0.24s 00:00:00.68 Elapsed: 00:00:00.40
# Mc/sec: 3240.96
//
Query:       KOO25210.1  [L=720]
Description: hypothetical protein Ctob_012424, partial [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    0.00013   21.4   0.0    0.00028   20.3   0.0    1.5  1  ART             NAD:arginine ADP-ribosyltransferase
    0.00029   20.2   0.0        0.4   10.0   0.0    2.3  2  ADPrib_exo_Tox  ADP-ribosyltransferase exoenzyme


Domain annotation for each model (and alignments):
>> ART  NAD:arginine ADP-ribosyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.3   0.0   3.1e-08   0.00028      29     189 ..     521     704 ..     502     707 .. 0.62

  Alignments for each domain:
  == domain 1  score: 20.3 bits;  conditional E-value: 3.1e-08
         ART  29 eefaakqalaesweqakkkwkerkaklelpegfkdehgiAllaYtssselyrelneavre....aGrsreeylsn..fdfkalhfyLtraLqlLrk... 118
                 ++f+a+ +     ++a +  ++    + + ++++ e+ +A+ +Y++    y+++ne +r+    +G  ree +++    f a +  L +++ +L++   
  KOO25210.1 521 SDFQAQTNAFIRERSADATTRHCVVLDPSRMEMNLEEVLAIRLYSGP--AYQPINEFLRQvsrlSGAFREELIHHpgLTFSATVGHLCSGIRKLSAits 617
                 555443333333333333333334444477889999*********99..888888888773333677888888764479****************9875 PP

         ART 119 dsqrcsqvyRgvkgl....rfsrakkgks.vRfgqFtssslkkkvae...efgqdtllsiktc........lgvpIkefskfpsede 189
                 +++  + ++Rgv+g+      ++ ++g   + + +F+s+s +++        g+++l +++          +g++I ++s+f+ e+e
  KOO25210.1 618 EEEATRPLFRGVRGElpheFWHPDEQGIVcAVDMAFMSTSKNRSTPLgymGEGKNVLWELEPVqesdgglhIGADISALSQFEAEEE 704
                 5556666******75221134566666441346689999988876554445566666666532111222224666666666666666 PP

>> ADPrib_exo_Tox  ADP-ribosyltransferase exoenzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.0   0.0   4.5e-05       0.4      17      43 ..     554     580 ..     525     618 .. 0.86
   2 !    7.8   0.0   0.00021       1.9     111     159 ..     650     705 ..     647     711 .. 0.82

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 4.5e-05
                     -HHHHHHHHHHCCTTHHHHHHHHHCTT CS
  ADPrib_exo_Tox  17 tssekeaireYtgsgysdINnyLrqnk 43 
                     + +e+ air Y g  y++IN+ Lrq  
      KOO25210.1 554 NLEEVLAIRLYSGPAYQPINEFLRQVS 580
                     668999******************987 PP

  == domain 2  score: 7.8 bits;  conditional E-value: 0.00021
                     ESS-EEEESSSS.SCCCTTT..SEEEEEEE-TTSB.....EEE-CCCSSSGCG-EE CS
  ADPrib_exo_Tox 111 ergyvSTslvkdtaasfggr..eilleltvpkgse.....gayisplslypgeaEv 159
                     + +++STs ++ t  +++g+  ++l+el+ ++ s      ga+is+ls+++ e E+
      KOO25210.1 650 DMAFMSTSKNRSTPLGYMGEgkNVLWELEPVQESDgglhiGADISALSQFEAEEEM 705
                     569*********9999999899******977776522222578888*******998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (720 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       292  (0.0162865); expected 358.6 (0.02)
Passed bias filter:                      271  (0.0151152); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.55u 0.23s 00:00:00.78 Elapsed: 00:00:00.38
# Mc/sec: 5749.19
//
Query:       KOO25211.1  [L=23]
Description: hypothetical protein Ctob_012423, partial [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (23 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       150  (0.00836633); expected 358.6 (0.02)
Passed bias filter:                      105  (0.00585643); expected 358.6 (0.02)
Passed Vit filter:                         3  (0.000167327); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.23s 00:00:00.55 Elapsed: 00:00:00.40
# Mc/sec: 174.30
//
Query:       KOO25212.1  [L=47]
Description: hypothetical protein Ctob_012909 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.18   11.9   0.0       0.23   11.5   0.0    1.2  1  zf-C2H2_6  C2H2-type zinc finger


Domain annotation for each model (and alignments):
>> zf-C2H2_6  C2H2-type zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   1.3e-05      0.23      10      23 ..      24      37 ..      23      40 .. 0.89

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 1.3e-05
   zf-C2H2_6 10 sFpslqaLggHkks 23
                +F++lq+L+ H ++
  KOO25212.1 24 RFNMLQNLTSHSYT 37
                8**********987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (47 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       220  (0.0122706); expected 358.6 (0.02)
Passed bias filter:                      180  (0.0100396); expected 358.6 (0.02)
Passed Vit filter:                         8  (0.000446204); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.32u 0.22s 00:00:00.54 Elapsed: 00:00:00.37
# Mc/sec: 384.38
//
Query:       KOO25213.1  [L=261]
Description: ribosome biogenesis protein nsa2-like protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
      2e-47  160.8   1.4    3.3e-47  160.1   1.1    1.5  1  Ribosomal_S8e  Ribosomal protein S8e


Domain annotation for each model (and alignments):
>> Ribosomal_S8e  Ribosomal protein S8e
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  160.1   1.1   1.9e-51   3.3e-47       4     137 .]      33     260 ..      30     260 .. 0.97

  Alignments for each domain:
  == domain 1  score: 160.1 bits;  conditional E-value: 1.9e-51
                    BXXCCCSEESSTEEXXXSSXXX...................................................CCSBXXXXXXXEE.......... CS
  Ribosomal_S8e   4 srdskhkrkltGgkakllrkkr...................................................kielgrkekatkl.......... 38 
                    + +s  ++k++G+kak+++kkr                                                   +i+++rkeka+k+          
     KOO25213.1  33 HLNSAIAKKVRGLKAKQFNKKRyaekavmkkkikmhgerlnkhqvaeqrddseavpaylldregmshakvlsnSIKQKRKEKAGKWnvpipkvkpm 128
                    5678899**********************************************************************************9999988 PP

                    .SSHEEEEEEETTCEEEE..............................EEESESEEEEEETTTTEEEEEEEEEEECSSSTCHHHHTTC--TTEEEE CS
  Ribosomal_S8e  39 .gaervkvvrvrgGkrkk..............................ralrlkkanvthpeekvtkklkIlgVkknpsnneyvrlgvltKgaiie 103
                     ++e++k v  ++Gkr+k                              +alr+kka+vthpe+k+t++l+++g+kknp++++y++lgv+tKg+iie
     KOO25213.1 129 gEDEVFKIV--KSGKRQKkqwkrqvnkvtfvgesftrkppklerfirpAALRFKKAHVTHPELKATFNLDLIGIKKNPQSPLYTSLGVITKGTIIE 222
                    449999999..***99999***************************************************************************** PP

                    EESHHHHHHHHTTEEE....EEEESEHHHHSSEEEEEE CS
  Ribosomal_S8e 104 vdvseLgevtqsgkvv....AqvtsrPgqdGcvnavlL 137
                    v++s+Lg+vt+sgkvv    Aqvt++P++dGc+navlL
     KOO25213.1 223 VNCSDLGLVTPSGKVVwgkyAQVTNHPENDGCINAVLL 260
                    *************************************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (261 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1203  (0.067098); expected 358.6 (0.02)
Passed bias filter:                      462  (0.0257683); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.23s 00:00:00.66 Elapsed: 00:00:00.37
# Mc/sec: 2118.11
//
Query:       KOO25214.1  [L=228]
Description: hypothetical protein Ctob_012911 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    7.3e-06   26.3   0.0    1.9e-05   24.9   0.0    1.7  2  RWD       RWD domain
  ------ inclusion threshold ------
      0.081   13.0   0.7         14    5.8   0.2    2.5  2  DUF2288   Protein of unknown function (DUF2288)
      0.087   11.9   0.1       0.13   11.4   0.1    1.1  1  FH2       Formin Homology 2 Domain


Domain annotation for each model (and alignments):
>> RWD  RWD domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.9   0.0   3.1e-09   1.9e-05       4     115 ..       8     127 ..       5     128 .. 0.75
   2 ?   -3.0   0.1       1.4   8.6e+03      85      97 ..     166     179 ..     153     190 .. 0.53

  Alignments for each domain:
  == domain 1  score: 24.9 bits;  conditional E-value: 3.1e-09
                 HHHHHHHHHHSTTTC...CCCH.T--EE--S-EEEEEEECECCCC....TT-CEEEEEEEEE-SSTTSS--EEEEEECC..................SS CS
                 xxxxxxxxxxxxxxx...xxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..................xx RF
         RWD   4 eqEleaLesIypdef...evie.nenysikleikikldededeedsefeekkkpslkleiklpeeYPeeaPiislsste..................nl 80 
                  +E+ aL++I + ++   e  e n +      + ++++ d++ee           l le+++p++YP  a ++++ ++                    +
  KOO25214.1   8 TDEIAALSAILGPDCwldE--EmNGHLV----LCVSPEVDSNEEV--------GCLALEVTMPPNYPADA-KVAIVCSSlaqfahhfehrvvpaagfFV 91 
                 79*********88885422..3346666....9999999999875........7*************777.4555555555677777778777777744 PP

                 -.HHHHHHHHHHHHHHHHHTTTS--CHHHHHHHHHH CS
                 x.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
         RWD  81 p.keqvksleekleelaeenlgepvifalidwlken 115
                 p  eq + +e  +   + + +ge+v+++++d ++++
  KOO25214.1  92 PpPEQAAGIEALIMAAIGNRPGEAVVYDVVDAVRQW 127
                 43666666777777777777***********99986 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 1.4
                 HHH.HHHHHHHHHH CS
                 xxx.xxxxxxxxxx RF
         RWD  85 vks.leekleelae 97 
                 + + l + ++e++e
  KOO25214.1 166 IDEeLIDVMKEVLE 179
                 33333333333333 PP

>> DUF2288  Protein of unknown function (DUF2288)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.1   0.0     0.004        24      40      65 ..     113     138 ..     111     154 .. 0.86
   2 ?    5.8   0.2    0.0023        14      35      67 ..     169     201 ..     163     216 .. 0.84

  Alignments for each domain:
  == domain 1  score: 5.1 bits;  conditional E-value: 0.004
                 HHHHHTT-HHHHHHHHHTTSEEE--H CS
     DUF2288  40 avaiaeDdkaaveawleegllakvse 65 
                 ++a++ D ++av++wle+++l  + +
  KOO25214.1 113 GEAVVYDVVDAVRQWLEANTLGALPT 138
                 78999**************9987655 PP

  == domain 2  score: 5.8 bits;  conditional E-value: 0.0023
                 -HHHHHHHHHTT-HHHHHHHHHTTSEEE--HHH CS
     DUF2288  35 dLvevavaiaeDdkaaveawleegllakvseeq 67 
                 +L++v  ++ eDdk+++++  e+++l   s++q
  KOO25214.1 169 ELIDVMKEVLEDDKEQLKRLREAERLPSGSASQ 201
                 79******************9999998777666 PP

>> FH2  Formin Homology 2 Domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.1   2.1e-05      0.13     280     335 ..     140     193 ..     132     197 .. 0.93

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 2.1e-05
                 HHHHHHHHHHHHHHHHHHHHHHCCTTSSTT-THHHHHHHHHHHHHHHHHHHHHHHH CS
         FH2 280 slekevkklekglkklekelessekkeepsdkflevlkeflkeaeeklkkleeelk 335
                 +++++v+++  + +  e++le  ++  + ++++++v+ke+l++ +e+lk+l+e ++
  KOO25214.1 140 EVDADVSAMMADAEVSEDDLELDDE--DIDEELIDVMKEVLEDDKEQLKRLREAER 193
                 5789999***************999..************************99875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (228 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       872  (0.0486363); expected 358.6 (0.02)
Passed bias filter:                      555  (0.0309554); expected 358.6 (0.02)
Passed Vit filter:                        58  (0.00323498); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.42u 0.24s 00:00:00.65 Elapsed: 00:00:00.38
# Mc/sec: 1807.32
//
Query:       KOO25215.1  [L=127]
Description: eukaryotic elongation factor 2 kinase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    9.7e-14   51.9   0.0    1.5e-13   51.3   0.0    1.2  1  Alpha_kinase  Alpha-kinase family


Domain annotation for each model (and alignments):
>> Alpha_kinase  Alpha-kinase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.3   0.0   8.3e-18   1.5e-13      96     145 ..       3      51 ..       2      60 .. 0.92

  Alignments for each domain:
  == domain 1  score: 51.3 bits;  conditional E-value: 8.3e-18
                   ---S-EEE-B-TTS-B...-SS-SHHHHHHHHHHHHTTTS-EEE--EEET CS
  Alpha_kinase  96 ylegefkKynsnsgyvkedselretmqAFshFtYeasggqllvcDlqGvg 145
                   yl g+f+Ky+snsg+v +d+ +r+t++AFsh+++e sgg +l++D+qG +
    KOO25215.1   3 YLRGDFTKYSSNSGFV-TDEVVRSTPHAFSHYSFELSGGAELLIDVQGPD 51 
                   899*************.7899999************************54 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (127 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       357  (0.0199119); expected 358.6 (0.02)
Passed bias filter:                      290  (0.0161749); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.34u 0.24s 00:00:00.58 Elapsed: 00:00:00.37
# Mc/sec: 1028.94
//
Query:       KOO25216.1  [L=368]
Description: hypothetical protein Ctob_007617, partial [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
     0.0046   16.9   4.8     0.0046   16.9   4.8    2.6  4  Zn_Tnp_IS91   Transposase zinc-binding domain
     0.0081   16.0   8.6     0.0081   16.0   8.6    2.2  2  PHD           PHD-finger
  ------ inclusion threshold ------
      0.015   15.0   3.1       0.04   13.6   3.1    1.7  1  zf-PHD-like   PHD/FYVE-zinc-finger like domain
        1.4    8.9   5.8        3.3    7.7   5.8    1.6  1  zf-RING_6     zf-RING of BARD1-type protein


Domain annotation for each model (and alignments):
>> Zn_Tnp_IS91  Transposase zinc-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.1       1.4   6.2e+03      39      56 ..      14      31 ..       7      36 .. 0.67
   2 ?   -1.8   0.1      0.76   3.4e+03      50      67 ..     119     128 ..     106     152 .. 0.59
   3 ?   -2.9   0.0       1.6   7.3e+03      17      35 ..     146     165 ..     131     172 .. 0.57
   4 !   16.9   4.8     1e-06    0.0046      23      68 ..     308     355 ..     293     360 .. 0.80

  Alignments for each domain:
  == domain 1  score: -2.7 bits;  conditional E-value: 1.4
  Zn_Tnp_IS91 39 ryeCeeCghekivyfsCk 56
                 r  C+ C+  +++   C+
   KOO25216.1 14 RDLCTPCTRPRTLELYCG 31
                 455777776666666665 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 0.76
  Zn_Tnp_IS91  50 ivyfsCksrhCpsCqkka 67 
                   +  s        C++++
   KOO25216.1 119 NMSLS--------CSQRK 128
                  34444........44444 PP

  == domain 3  score: -2.9 bits;  conditional E-value: 1.6
  Zn_Tnp_IS91  17 rpsqrkaveki.lrCrtaal 35 
                  r ++  a++ + ++C+t +l
   KOO25216.1 146 RYHYLTACHLYwQACGTTEL 165
                  44444444432145666554 PP

  == domain 4  score: 16.9 bits;  conditional E-value: 1e-06
  Zn_Tnp_IS91  23 avekilrCrtaalGfaryeCeeCg..hekivyfsCksrhCpsCqkkat 68 
                  + +k +rC++ + G+ + +C++C    ++ +  s     CpsC +k++
   KOO25216.1 308 NRDKCTRCGNLKRGGIVHACDGCAdaYHRRCISSSDGWYCPSCVHKHA 355
                  568999*****************7334566666777777****99976 PP

>> PHD  PHD-finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.1       1.6   7.2e+03      46      50 ..      17      21 ..      10      38 .. 0.72
   2 !   16.0   8.6   1.8e-06    0.0081       2      51 ..     312     352 ..     311     353 .. 0.89

  Alignments for each domain:
  == domain 1  score: -3.0 bits;  conditional E-value: 1.6
                STTTH CS
         PHD 46 CekCk 50
                C+ C+
  KOO25216.1 17 CTPCT 21
                44443 PP

  == domain 2  score: 16.0 bits;  conditional E-value: 1.8e-06
                 BTTTTSTTSTTSCEEEETTTSCEEETTTSSSTHSHHSHHSSTBSSTTTHT CS
         PHD   2 CavCkkksdeeeelvqCdgCkrwfHqkClkppleseekpegewlCekCke 51 
                 C  C++  + ++ +  CdgC +++H  C++ ++         w+C++C  
  KOO25216.1 312 CTRCGN-LKRGGIVHACDGCADAYHRRCISSSDG--------WYCPSCVH 352
                 999999.889999999*************98855........******76 PP

>> zf-PHD-like  PHD/FYVE-zinc-finger like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   3.1   8.8e-06      0.04       1      31 [.     312     340 ..     310     344 .. 0.74

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 8.8e-06
  zf-PHD-like   1 CdtCaeskdeekgqlv.yCqGCslsyhkaClG 31 
                  C  C++ k   +g +v  C GC+ +yh++C+ 
   KOO25216.1 312 CTRCGNLK---RGGIVhACDGCADAYHRRCIS 340
                  55565554...6655527************97 PP

>> zf-RING_6  zf-RING of BARD1-type protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.7   5.8   0.00073       3.3       9      47 ..     311     351 ..     308     356 .. 0.88

  Alignments for each domain:
  == domain 1  score: 7.7 bits;  conditional E-value: 0.00073
   zf-RING_6   9 rcsrctdilrepvc..lggcehifcsncisdcfgsgcpvcy 47 
                 +c+rc ++ r  +     gc   +   cis   g  cp c 
  KOO25216.1 311 KCTRCGNLKRGGIVhaCDGCADAYHRRCISSSDGWYCPSCV 351
                 7*********988522579********************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (368 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       496  (0.0276647); expected 358.6 (0.02)
Passed bias filter:                      270  (0.0150594); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.47u 0.23s 00:00:00.70 Elapsed: 00:00:00.42
# Mc/sec: 2641.72
//
Query:       KOO25217.1  [L=428]
Description: mRNA splicing factor ATP-dependent RNA helicase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    3.9e-18   65.6   0.0    6.2e-18   64.9   0.0    1.3  1  OB_NTP_bind  Oligonucleotide/oligosaccharide-binding (OB)-fol
    9.6e-17   61.2   0.0    2.2e-16   60.1   0.0    1.7  1  HA2          Helicase associated domain (HA2)


Domain annotation for each model (and alignments):
>> OB_NTP_bind  Oligonucleotide/oligosaccharide-binding (OB)-fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.9   0.0   6.9e-22   6.2e-18       1      82 [.     256     357 ..     256     358 .. 0.75

  Alignments for each domain:
  == domain 1  score: 64.9 bits;  conditional E-value: 6.9e-22
                  HHHHHHHHHTTCEEE.EEETTCCEEETTT..................CEEEEE-TTSTTTTT...TSSSEEEEEEEEES..SSEEEEEEEEE-HHHHH CS
  OB_NTP_bind   1 lraillaGlypqiar.kdpskkdyktart..................ktrvfihpsSvlaknekekepewvvytelvet..tklylrdltaidpawLl 77 
                  +ra+++aGlyp+++r + p +k+  ta++                  + rvf+hps++l+ +e++++ +w+vyt++++    k+y+rd++a++p+ Ll
   KOO25217.1 256 VRALVCAGLYPNLVRvRMPDTKYVATAQGaieaanddarairfytlpNSRVFLHPSCALF-TETAFNARWLVYTSKQQVaaEKVYVRDVSAVSPLALL 352
                  699***********644555555333332233444444444444444*************.7*************66654499*************** PP

                  HHSTT CS
  OB_NTP_bind  78 lfagq 82 
                  lf+g 
   KOO25217.1 353 LFGGE 357
                  ***96 PP

>> HA2  Helicase associated domain (HA2)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.1   0.0   2.4e-20   2.2e-16      14     106 ..      96     170 ..      73     243 .. 0.82

  Alignments for each domain:
  == domain 1  score: 60.1 bits;  conditional E-value: 2.4e-20
         HA2  14 egnlTelGrkmaelPlsprlakmLlaaaeleegcldevitivAalsv.eeifleeneeekeeeeeeeekakkkrkeeekarrklahkdaegDhl 106
                 +++lT+lG+++a++Pl+pr++k+L+++a l  gc+d+++ti+Aa+s  +++fl ++e ++e +                ar+++++ +  +Dhl
  KOO25217.1  96 REELTPLGSHLARMPLEPRVGKILIYGALL--GCIDPALTIAAAMSLsRSPFLTPHERRQEAAT---------------ARADFVRDR--SDHL 170
                 378************************777..**************76********86654433...............333333333..5554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (428 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       561  (0.0312901); expected 358.6 (0.02)
Passed bias filter:                      438  (0.0244297); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.50u 0.22s 00:00:00.72 Elapsed: 00:00:00.39
# Mc/sec: 3291.53
//
Query:       KOO25218.1  [L=179]
Description: calcium calmodulin dependent protein kinase ii association-domain protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.8e-20   72.0   0.0    6.2e-20   71.6   0.0    1.1  1  CaMKII_AD  Calcium/calmodulin dependent protein kinase II ass
    5.3e-13   49.3   0.0    7.4e-13   48.8   0.0    1.2  1  DUF4440    Domain of unknown function (DUF4440)
    1.3e-07   31.9   0.1    1.8e-07   31.4   0.1    1.2  1  SnoaL_3    SnoaL-like domain
    6.9e-06   26.6   0.0      1e-05   26.1   0.0    1.2  1  SnoaL_2    SnoaL-like domain
  ------ inclusion threshold ------
      0.082   12.6   0.0       0.12   12.1   0.0    1.3  1  DUF3225    Protein of unknown function (DUF3225)


Domain annotation for each model (and alignments):
>> CaMKII_AD  Calcium/calmodulin dependent protein kinase II association domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   71.6   0.0   1.7e-23   6.2e-20       2     128 .]      47     165 ..      46     165 .. 0.95

  Alignments for each domain:
  == domain 1  score: 71.6 bits;  conditional E-value: 1.7e-23
                 HHHHHHHHHHHHHHHHTT-HHHHHHHEEEEEEEE-GGGTT-EEESSHHHHGGGS...SSSS-SEEEEEESEEEEEESTTEEEEEEEEEEEEE-TTS-EE CS
   CaMKII_AD   2 kqeiiklletlleaisegdfetytklcdpeltvfepevlgnlveglefhrfyfekllakrkkavrttilnkrvrllgddsAviayvrlltlldknGkkh 100
                 k ei+ l++ +++a+++ +++++ +l++p+ ++++p+ ++ ++   e  + yfe++lak + +v   i + ++r +gd  A+ ++++++t+    G   
  KOO25218.1  47 KDEIAGLFDVWNKALQTQEPKEVSALYAPN-AILLPTLSNTVRHTTEEREDYFEHFLAKGPSGV---IDQSNIRTFGD-LAIHSGIYTFTFSTT-GAS- 138
                 679***************************.*********************************...***********.***********9864.544. PP

                 EEEEEEEEEEEEETTEEEEEEEEEE-XX CS
   CaMKII_AD 101 trqseetrVwekrdgkWkivhvHrSaap 128
                  +q++ t+V+     kW+i+++H+S +p
  KOO25218.1 139 -VQARFTFVYAWNGTKWQIMEHHSSLMP 165
                 .69**********************887 PP

>> DUF4440  Domain of unknown function (DUF4440)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.8   0.0   2.1e-16   7.4e-13       3     107 .]      52     156 ..      50     156 .. 0.91

  Alignments for each domain:
  == domain 1  score: 48.8 bits;  conditional E-value: 2.1e-16
                 HHHHHHHHHHHCT-HHHHHHCEEEEEEEE.-TTS-EEEHHHHHHHHHCCH.CEEEEEEEEEEEEEEETTEEEEEEEEEEEECCTTEEEEEEEEEEEEEE CS
     DUF4440   3 aleealeeafvagdaealaallapdavlv.gpsgtvldkeellealeagf.aagrslelteeevrvlgdlAvvtgrytfegrgdgepvegrgrftsvwr 99 
                  l+  +++a+ +  ++++ al+ap+a+l  + s tv+ + e  e +++ f a+g+s +++   +r+ gdlA+ +g+ytf+    g+  ++++rft+v+ 
  KOO25218.1  52 GLFDVWNKALQTQEPKEVSALYAPNAILLpTLSNTVRHTTEEREDYFEHFlAKGPSGVIDQSNIRTFGDLAIHSGIYTFTFSTTGA--SVQARFTFVYA 148
                 567779***********************7778999999999****999945679**************************99996..6689******* PP

                 EETTEEEE CS
     DUF4440 100 kegggWri 107
                 ++g +W+i
  KOO25218.1 149 WNGTKWQI 156
                 *******8 PP

>> SnoaL_3  SnoaL-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.4   0.1   5.1e-11   1.8e-07       4     119 ..      53     164 ..      50     166 .. 0.90

  Alignments for each domain:
  == domain 1  score: 31.4 bits;  conditional E-value: 5.1e-11
     SnoaL_3   4 lldafyeaaaegdfdalfalwaddivfigtgadelltgreevrrslkqifakgegisfeltdvrvtesgdvawvtelldvtaaedgtegegqlrlTgvl 102
                 l+d +++a+ +   ++++al+a++++ + t ++ + ++ ee +++++  +ak  g s ++++ +++  gd+a+     + t+++    ++ q r+T+v+
  KOO25218.1  53 LFDVWNKALQTQEPKEVSALYAPNAILLPTLSNTVRHTTEEREDYFEHFLAK--GPSGVIDQSNIRTFGDLAIHSGIYTFTFSTT--GASVQARFTFVY 147
                 7899**********************************************96..778899***************9987777555..556678****** PP

     SnoaL_3 103 rrtdggWkivhhhlSvp 119
                   ++ +W+i  hh+S +
  KOO25218.1 148 AWNGTKWQIMEHHSSLM 164
                 ***************54 PP

>> SnoaL_2  SnoaL-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.1   0.0   2.8e-09     1e-05       4      99 ..      57     154 ..      53     157 .. 0.92

  Alignments for each domain:
  == domain 1  score: 26.1 bits;  conditional E-value: 2.8e-09
                 HHHHHHTTCHHHHHHTEEEEEEEEET.TSE.EESHHHHHHHHHHHHHHEEEEEEEEEEEEEETTEEEEEEEEEEEEETTSSEEEEEEEEEEEEETTEE CS
     SnoaL_2   4 flaalnagdldalaalfapdvvwedp.gge.lrGreairaffralfaafpdlrfeihdvvadgdrvavewtvtgtipatgrgvtvrgvdvfrvrdGki 99 
                 +  al+++ ++++ al+ap++ +  +  ++ ++  e+  ++f++++a+ p   ++  ++ + gd ++ ++ +t t  +tg+ v+ r++ v+ +++ k+
  KOO25218.1  57 WNKALQTQEPKEVSALYAPNAILLPTlSNTvRHTTEEREDYFEHFLAKGPSGVIDQSNIRTFGDLAIHSGIYTFTFSTTGASVQARFTFVYAWNGTKW 154
                 678999******************9987777999999999*****************************9999999***************9988776 PP

>> DUF3225  Protein of unknown function (DUF3225)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   3.4e-05      0.12      10     125 ..      48     166 ..      41     167 .. 0.82

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 3.4e-05
                 HHHHHHHHHHHHHHHTT-HHHHHHHB--STT-EEEETTEEEESHHHHHHHHHHS--TT---EEEEEEEEEETT...TEEEEEEEEE-SS-SS-EEEEEE CS
     DUF3225  10 aevtaafarYeaaLvsndvaaldalfwddpktvRyGvgenLyGieairafRaarpsvglaRellrtvvttfGe...DvavasvefrregseriGRqsqt 105
                  e++ +f+ +++aL +++ +++ al+  +   +        + +e+ +++ ++  ++g++  + + ++ tfG+     ++ + +f  +g++   R + +
  KOO25218.1  48 DEIAGLFDVWNKALQTQEPKEVSALYAPNAILLPTLSNTVRHTTEEREDYFEHFLAKGPSGVIDQSNIRTFGDlaiHSGIYTFTFSTTGASVQARFTFV 146
                 678889999999999999999999987776666666666667889999999999999***************522233456788999999999999999 PP

                 EEEETTEEEEEEEEEEE-.- CS
     DUF3225 106 WvrlpegWrivaahvsllde 125
                 ++   + W+i+  h sl++e
  KOO25218.1 147 YAWNGTKWQIMEHHSSLMPE 166
                 999999***********976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (179 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       419  (0.02337); expected 358.6 (0.02)
Passed bias filter:                      327  (0.0182386); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.38u 0.24s 00:00:00.62 Elapsed: 00:00:00.39
# Mc/sec: 1376.28
//
Query:       KOO25219.1  [L=181]
Description: hypothetical protein Ctob_007618 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (181 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       254  (0.014167); expected 358.6 (0.02)
Passed bias filter:                      235  (0.0131073); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.41u 0.24s 00:00:00.64 Elapsed: 00:00:00.42
# Mc/sec: 1291.90
//
Query:       KOO25220.1  [L=320]
Description: hypothetical protein Ctob_007619 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.6e-23   83.8   0.5      9e-23   81.3   0.3    1.9  2  Amino_oxidase  Flavin containing amine oxidoreductase


Domain annotation for each model (and alignments):
>> Amino_oxidase  Flavin containing amine oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.4   0.0     0.017   3.1e+02     181     225 ..      75     115 ..      20     125 .. 0.73
   2 !   81.3   0.3     5e-27     9e-23     336     451 ..     138     251 ..     122     252 .. 0.93

  Alignments for each domain:
  == domain 1  score: 0.4 bits;  conditional E-value: 0.017
                    TTCBHHHHTCCCCHHHHHTSCCCEETTHTHHHHHHHHHTTTTEEE CS
  Amino_oxidase 181 selsaklalpllwelegfggslllprgGlsqlpealaeelrgldi 225
                    ++ + ++  ++ + + g+g++ +lp gG++++++ l++   g+++
     KOO25220.1  75 DLRQTSAREYDTDMYGGKGKDEVLP-GGYDCIVRGLSR---GVEV 115
                    4445555566666667777777776.********9999...5544 PP

  == domain 2  score: 81.3 bits;  conditional E-value: 5e-27
                    TEEEEEEEEECHHHHHHHTTS-HHHHHHHHHHHHHHHHTGTSSTCSEEEEEECCTETTTSSSEEE.BTTHHHHHHHHHHCHHCSTTEEE.SGGGCT CS
  Amino_oxidase 336 gkglvllvyvggdaaneleslsdeelvqavlrdLrklfgeevpepkatlvtrWhtdplargsysyvsvgpghedydplakpegdprlffAGehtsr 431
                    g + vll+ +   +a+ l+ ++de+l+  v+ +Lr++++  +p p at+v r +++ + rg+++++++++ +e  ++l +p   +r+f+AGehts 
     KOO25220.1 138 GAP-VLLMETERAWARTLAAMPDEQLLGVVMGELRRMYP-GAPAPTATVVARLGENVFQRGAFTFMPPRETSELQRRLWQPLAAGRVFLAGEHTSV 231
                    444.59999999***************************.**************99999***********999999999999************** PP

                    TTTTSHHHHHHHHHHHHHHH CS
  Amino_oxidase 432 eypgtvegAilSGlraAari 451
                     + gtv+gA+ SG++aAa++
     KOO25220.1 232 LHAGTVHGAVVSGRQAAAQV 251
                    *****************997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (320 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       430  (0.0239835); expected 358.6 (0.02)
Passed bias filter:                      348  (0.0194099); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.25s 00:00:00.70 Elapsed: 00:00:00.40
# Mc/sec: 2419.89
//
Query:       KOO25221.1  [L=861]
Description: hypothetical protein Ctob_007616, partial [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
     0.0025   17.2   0.1         56    2.9   0.0    4.1  4  Glyco_transf_9  Glycosyltransferase family 9 (heptosyltransfe


Domain annotation for each model (and alignments):
>> Glyco_transf_9  Glycosyltransferase family 9 (heptosyltransferase)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    2.6   0.0    0.0039        70     165     186 ..     648     669 ..     629     671 .. 0.77
   2 !    2.9   0.0    0.0032        58     161     186 ..     698     725 ..     681     727 .. 0.74
   3 !    2.9   0.0    0.0031        56     153     186 ..     746     781 ..     737     783 .. 0.75
   4 !    2.9   0.0    0.0031        56     153     186 ..     802     837 ..     793     839 .. 0.75

  Alignments for each domain:
  == domain 1  score: 2.6 bits;  conditional E-value: 0.0039
                     TTEEE-TTTS-HHHHHHHHHTS CS
  Glyco_transf_9 165 ekavnllgktsLeelaallaka 186
                     + +  l++ tsL+e+++l+a++
      KOO25221.1 648 FSMSSLAPATSLAEATDLIARL 669
                     33789**************975 PP

  == domain 2  score: 2.9 bits;  conditional E-value: 0.0032
                     HHHHTT..EEE-TTTS-HHHHHHHHHTS CS
  Glyco_transf_9 161 agleek..avnllgktsLeelaallaka 186
                     +++  +  +  l++ tsL+e+++l+a++
      KOO25221.1 698 ESVSMPfsMSSLAPATSLAEATDLIARL 725
                     55443344889**************975 PP

  == domain 3  score: 2.9 bits;  conditional E-value: 0.0031
                     HHHHTTS-HHHHTT..EEE-TTTS-HHHHHHHHHTS CS
  Glyco_transf_9 153 eeiaeriaagleek..avnllgktsLeelaallaka 186
                     +  ++ +++++  +  +  l++ tsL+e+++l+a++
      KOO25221.1 746 AMVLDVLTESVSMPlsMSSLAPATSLAEATDLIARL 781
                     5556666666665566889**************975 PP

  == domain 4  score: 2.9 bits;  conditional E-value: 0.0031
                     HHHHTTS-HHHHTT..EEE-TTTS-HHHHHHHHHTS CS
  Glyco_transf_9 153 eeiaeriaagleek..avnllgktsLeelaallaka 186
                     +  ++ +++++  +  +  l++ tsL+e+++l+a++
      KOO25221.1 802 AMVLDVLTESVSMPlsMSSLAPATSLAEATDLIARL 837
                     5556666666665566889**************975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (861 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       352  (0.019633); expected 358.6 (0.02)
Passed bias filter:                      205  (0.011434); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.62u 0.25s 00:00:00.87 Elapsed: 00:00:00.44
# Mc/sec: 5933.75
//
Query:       KOO25222.1  [L=413]
Description: hypothetical protein Ctob_010995 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    0.00017   22.0   0.5      0.027   15.0   0.5    2.3  2  PH        PH domain
    0.00027   21.2   0.4    0.00077   19.7   0.4    1.8  2  PH_8      Pleckstrin homology domain


Domain annotation for each model (and alignments):
>> PH  PH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.5   3.1e-06     0.027       5      37 ..      86     123 ..      84     133 .. 0.81
   2 !    5.9   0.0     0.002        18      63     101 ..     126     160 ..     117     163 .. 0.84

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 3.1e-06
                 EEEEEETSSSSCSEEEEEEEEETTE..EEEESST....T CS
          PH   5 GwLlkkgsgkkkswkkrwfvLkdse..llyyknd....k 37 
                 GwL+kk+++ + +w kr+f++++++  l+y k+     k
  KOO25222.1  86 GWLQKKHHRSG-GWAKRYFYVDETRgtLSYAKSVmsvtK 123
                 9********99.**********99998998888755443 PP

  == domain 2  score: 5.9 bits;  conditional E-value: 0.002
                 SSSSTSEEEEEESTSSSTEEEEEEESSHHHHHHHHHHHH CS
          PH  63 dpkrkfcfelriverngsrtyllqasseeerkeWikaiq 101
                   + +++f+++ +    +  ++ +a s+ e+k W+++++
  KOO25222.1 126 LDDDPCTFVIKCP----PIHLTVAAVSPKEAKVWMTQLE 160
                 6788999***888....799****************996 PP

>> PH_8  Pleckstrin homology domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.7   0.4   8.6e-08   0.00077       1      34 [.      86     118 ..      86     173 .. 0.85
   2 ?   -3.8   0.0       1.8   1.6e+04      38      54 ..     277     293 ..     274     297 .. 0.73

  Alignments for each domain:
  == domain 1  score: 19.7 bits;  conditional E-value: 8.6e-08
        PH_8   1 gillkkrrkklqgyakRfFvLdlksstlsYyrdd 34 
                 g+l+kk   +  g+akR+F +d +++tlsY ++ 
  KOO25222.1  86 GWLQKKH-HRSGGWAKRYFYVDETRGTLSYAKSV 118
                 6788775.5788******************8765 PP

  == domain 2  score: -3.8 bits;  conditional E-value: 1.8
        PH_8  38 alrgkiplslaiisane 54 
                  +r + p+ l+ i an+
  KOO25222.1 277 PMRSAAPVPLSQIIAND 293
                 58999999999666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (413 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       852  (0.0475208); expected 358.6 (0.02)
Passed bias filter:                      446  (0.0248759); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.52u 0.29s 00:00:00.81 Elapsed: 00:00:00.44
# Mc/sec: 2808.87
//
Query:       KOO25223.1  [L=192]
Description: transmembrane protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.3e-06   28.8   0.0    2.2e-06   28.1   0.0    1.3  1  COX6A     Cytochrome c oxidase subunit VIa
    0.00054   20.3   0.0     0.0029   17.9   0.0    1.9  2  MMgT      Membrane magnesium transporter
  ------ inclusion threshold ------
      0.037   14.4   0.0      0.061   13.7   0.0    1.2  1  DUF296    Plants and Prokaryotes Conserved (PCC) domain


Domain annotation for each model (and alignments):
>> COX6A  Cytochrome c oxidase subunit VIa
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.1   0.0   3.6e-10   2.2e-06      30      95 ..     106     164 ..     100     176 .. 0.86

  Alignments for each domain:
  == domain 1  score: 28.1 bits;  conditional E-value: 3.6e-10
       COX6A  30 vkeHaeettdlwrklslyvaipalilaainaynlekeHaeHvehlkeleerteYeYqnirtknffw 95 
                   +Ha + td w+k+s +v +p+   +++++  ++  H  H +h+    e+++Y++ + r k+ +w
  KOO25223.1 106 SLDHAIAETDKWKKIS-FVFLPV---VGLYMGFVFVRHNSHGHHEY---EQVKYPFVKKRDKPMPW 164
                 568*************.667776...57788899999999999987...99*************** PP

>> MMgT  Membrane magnesium transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.9   0.0   4.8e-07    0.0029       4      73 ..      18      84 ..      15      94 .. 0.93
   2 ?   -0.2   0.0      0.21   1.3e+03       3      22 ..     132     151 ..     130     165 .. 0.74

  Alignments for each domain:
  == domain 1  score: 17.9 bits;  conditional E-value: 4.8e-07
        MMgT  4 glllLlHagYSahehsallsaskkseqsatsLPlDitletlvslvllilglvlsaeeLkpIqlrkaagki 73
                ++ lL+Ha   a  h+ +l   k+ +q+++  P++i  +  v+lvl + g++  + ++ pI+  ++ g++
  KOO25223.1 18 SIGLLIHATLCAIYHRDYL---KAVQQPFAYSPFEIAAQCGVALVLGTWGVLRLQGNFLPIRTTEVLGQQ 84
                6679***************...899*************************************99998875 PP

  == domain 2  score: -0.2 bits;  conditional E-value: 0.21
        MMgT   3 vglllLlHagYSahehsall 22 
                 +g++++ H     he+++++
  KOO25223.1 132 MGFVFVRHNSHGHHEYEQVK 151
                 68899999999999999887 PP

>> DUF296  Plants and Prokaryotes Conserved (PCC) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.0     1e-05     0.061      25      93 ..       9     111 ..       6     115 .. 0.76

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 1e-05
                 T-SSEEEEEEEEEEEEEE..EEECTTT........EE-...............S-EEEEEEEEEEEE.......TT....EEEEEEEEETTSEEEEEEE CS
      DUF296  25 giraacvlsaiGavsnvt..rladgee........kll...............grfeilslsGtilp.......dg....lHlhvslagedgqvvgGhl 87 
                 +i+++ vl  iG +  +t  ++++++                           g + +l l+G++lp       ++    l+  ++la +  +++gGh 
  KOO25223.1   9 SISNLAVLASIGLLIHATlcAIYHRDYlkavqqpfA-YspfeiaaqcgvalvlGTWGVLRLQGNFLPirttevlGQqyalLRARMALAPKGVRMMGGHS 106
                 58899999**********877776666776655550.0555566667777777**************99977762268889999****9889******8 PP

                 EEE.EE CS
      DUF296  88 aegplv 93 
                 ++  ++
  KOO25223.1 107 LDH-AI 111
                 844.55 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (192 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       436  (0.0243181); expected 358.6 (0.02)
Passed bias filter:                      368  (0.0205254); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.38u 0.28s 00:00:00.66 Elapsed: 00:00:00.40
# Mc/sec: 1432.46
//
Query:       KOO25224.1  [L=147]
Description: hypothetical protein Ctob_010996, partial [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
     0.0026   17.4   4.2     0.0026   17.4   4.2    1.5  1  MscS_porin  Mechanosensitive ion channel porin domain
  ------ inclusion threshold ------
      0.017   15.2   0.9        6.6    6.9   1.1    2.5  2  HR1         Hr1 repeat
      0.091   11.6   0.6      0.092   11.6   0.6    1.1  1  Spc7        Spc7 kinetochore protein
       0.11   12.9   0.1       0.19   12.2   0.1    1.4  1  DUF1547     Domain of Unknown Function (DUF1547)
       0.39   11.0   3.3        9.2    6.6   0.2    2.7  3  WXG100      Proteins of 100 residues with WXG
          1    7.8   3.7        1.1    7.7   3.7    1.0  1  Macoilin    Macoilin family


Domain annotation for each model (and alignments):
>> MscS_porin  Mechanosensitive ion channel porin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.4   4.2   8.6e-07    0.0026      81     139 ..      30      88 ..      21     110 .. 0.84

  Alignments for each domain:
  == domain 1  score: 17.4 bits;  conditional E-value: 8.6e-07
  MscS_porin  81 eeLeqrllqtssqlqelqeqlaqlnsqlvelqtrperaqqqltearqrlqeirnrLnst 139
                 ++Leq+l +t+++l++  ++ +   s+l++ q+++ +a+++l e r+ ++ ++ rL   
  KOO25224.1  30 QDLEQKLRATEDALLDMHAECKATRSELRAEQDALRKARAALDEGRRGMAMLQGRLRVE 88 
                 79*********************************************999999998444 PP

>> HR1  Hr1 repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.9   1.1    0.0022       6.6      28      59 ..      55      86 ..      22      96 .. 0.77
   2 ?    5.8   0.0    0.0051        15      25      58 ..     113     147 .]     109     147 .] 0.90

  Alignments for each domain:
  == domain 1  score: 6.9 bits;  conditional E-value: 0.0022
         HR1 28 skktqnkkvrqeaeselsesnskielLreqLe 59
                s+    ++++++a + l+e ++ ++ L+ +L+
  KOO25224.1 55 SELRAEQDALRKARAALDEGRRGMAMLQGRLR 86
                33666788********************9996 PP

  == domain 2  score: 5.8 bits;  conditional E-value: 0.0051
         HR1  25 alesk.ktqnkkvrqeaeselsesnskielLreqL 58 
                 al+++ ++  +++ ++a   +++++ ++++L+eqL
  KOO25224.1 113 ALDRGyASRLREAAETAVRGMHDAQAECRFLHEQL 147
                 677888888899999******************98 PP

>> Spc7  Spc7 kinetochore protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.6   3.1e-05     0.092     195     306 ..      29     142 ..       3     146 .. 0.71

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 3.1e-05
        Spc7 195 sid.keeLeelreelaelkaeieekkkelaelqeqleeleekieelkeqkseleeeiaeaervleeckgwsesevsrlkee.vkaleeltgwkivslsg 291
                 + d +++L+++ ++l + +ae ++ + el   q+ l + +++++e +  ++ l+ +++ +    + ++ +   ev rl+ + v al++ +  ++ ++ +
  KOO25224.1  29 QQDlEQKLRATEDALLDMHAECKATRSELRAEQDALRKARAALDEGRRGMAMLQGRLRVEAAAHRVTQCVLIAEVARLERQwVGALDRGYASRLREAAE 127
                 344477888888888888888888888888888888888888888888888888888877777777788888888888776456777777777777777 PP

        Spc7 292 stleltyrselevsf 306
                 + +  +++ + e++f
  KOO25224.1 128 TAVRGMHDAQAECRF 142
                 777766666666665 PP

>> DUF1547  Domain of Unknown Function (DUF1547)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.1   6.3e-05      0.19      26      47 ..       9      30 ..       3      39 .. 0.84

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 6.3e-05
     DUF1547 26 lqanqtLGdivndveqegssqe 47
                l+ n  LG+i++d++++g+ q+
  KOO25224.1  9 LEENALLGSIIDDLRKQGGGQQ 30
                778999***********99886 PP

>> WXG100  Proteins of 100 residues with WXG
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.1   0.1     0.037   1.1e+02      11      37 ..      17      43 ..      13      46 .. 0.83
   2 ?    6.6   0.2    0.0031       9.2       2      40 ..      36      74 ..      35      80 .. 0.86
   3 ?    4.2   0.1     0.017        50      29      60 ..      98     129 ..      78     142 .. 0.73

  Alignments for each domain:
  == domain 1  score: 3.1 bits;  conditional E-value: 0.037
                HHHHHHHHHHHHHHHHHHHHHHHHHHC CS
      WXG100 11 qaaarfqkqaeeledelqrlkaevdal 37
                + + +++kq +  +d+ q+l+a+ dal
  KOO25224.1 17 SIIDDLRKQGGGQQDLEQKLRATEDAL 43
                667889999999999999999999998 PP

  == domain 2  score: 6.6 bits;  conditional E-value: 0.0031
                HCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGCG CS
      WXG100  2 ikvdpeelrqaaarfqkqaeeledelqrlkaevdalqsg 40
                ++++ ++l ++ a+ +++++el++e+++l++  +al +g
  KOO25224.1 36 LRATEDALLDMHAECKATRSELRAEQDALRKARAALDEG 74
                67888999**********************999999665 PP

  == domain 3  score: 4.2 bits;  conditional E-value: 0.017
                 HHHHHHHHCGCGCTHHHCHHHHHHHHHHHHHH CS
      WXG100  29 rlkaevdalqsgWsGaaadafqaefeewkqaa 60 
                  l aev+ l+ +W Ga    +++ + e  ++a
  KOO25224.1  98 VLIAEVARLERQWVGALDRGYASRLREAAETA 129
                 57789999*******98888888777555444 PP

>> Macoilin  Macoilin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.7   3.7   0.00038       1.1     412     538 ..      22     146 ..       4     147 .] 0.74

  Alignments for each domain:
  == domain 1  score: 7.7 bits;  conditional E-value: 0.00038
    Macoilin 412 LqasrqteqelrskissltseerslkselqqlkkendllqtklhelvsakqkdkqtlqqlekrLkeekearaslekqLaeek.krkkeeeetaaraval 509
                 L+++   +q+l++k+ +   +   +++e ++ + e    q  l+++  a  + ++ +  l+ rL+ e+ a   ++  L  e  +  ++       a   
  KOO25224.1  22 LRKQGGGQQDLEQKLRATEDALLDMHAECKATRSELRAEQDALRKARAALDEGRRGMAMLQGRLRVEAAAHRVTQCVLIAEVaRLERQW----VGALDR 116
                 44444456777777777777777788888888888888888888999999999************998766666666655540444444....444556 PP

    Macoilin 510 aaasr.secteslkskkreleaeikkLeke 538
                   asr +e +e+  +  ++ +ae++ L+++
  KOO25224.1 117 GYASRlREAAETAVRGMHDAQAECRFLHEQ 146
                 788888999999999999999999988876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (147 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       860  (0.047967); expected 358.6 (0.02)
Passed bias filter:                      499  (0.027832); expected 358.6 (0.02)
Passed Vit filter:                        73  (0.00407162); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.40u 0.26s 00:00:00.66 Elapsed: 00:00:00.40
# Mc/sec: 1106.05
//
Query:       KOO25225.1  [L=896]
Description: ATP-dependent RNA helicase dhx29-like protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
      8e-18   64.6   0.0    1.7e-17   63.5   0.0    1.5  1  OB_NTP_bind   Oligonucleotide/oligosaccharide-binding (OB)-fo
    2.9e-13   50.1   0.0    7.8e-13   48.8   0.0    1.8  1  Helicase_C    Helicase conserved C-terminal domain
      6e-13   49.0   0.0    1.9e-12   47.4   0.0    1.9  1  HA2           Helicase associated domain (HA2)
    4.4e-11   42.9   0.2    7.4e-11   42.1   0.2    1.3  1  DEAD          DEAD/DEAH box helicase
    3.5e-06   27.4   0.1      1e-05   25.8   0.1    1.7  1  AAA_22        AAA domain
    0.00024   21.5   0.3    0.00062   20.1   0.2    1.8  2  AAA_19        AAA domain
     0.0013   18.5   0.9     0.0013   18.5   0.9    2.0  2  AAA_30        AAA domain
     0.0038   17.6   2.3     0.0038   17.6   2.3    3.3  3  AAA_16        AAA ATPase domain
  ------ inclusion threshold ------
       0.02   15.4   0.0      0.051   14.1   0.0    1.6  1  ABC_tran      ABC transporter
       0.11   11.8   0.0       0.32   10.3   0.0    1.8  1  FtsK_SpoIIIE  FtsK/SpoIIIE family
       0.16   11.7   0.0       0.37   10.6   0.0    1.6  1  AAA_29        P-loop containing region of AAA domain
       0.18   11.8   0.0        0.6   10.1   0.0    1.9  2  Dynamin_N     Dynamin family
        0.2   11.0   0.0       0.41   10.0   0.0    1.4  1  ATPase        KaiC


Domain annotation for each model (and alignments):
>> OB_NTP_bind  Oligonucleotide/oligosaccharide-binding (OB)-fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.5   0.0   1.2e-20   1.7e-17       1      80 [.     688     766 ..     688     768 .. 0.92

  Alignments for each domain:
  == domain 1  score: 63.5 bits;  conditional E-value: 1.2e-20
                  HHHHHHHHHTTCEEEEEETTCCEEETTTCEEEEE-TTSTTTTT...TSSSEEEEEEEEESSSEEEEEEEEE-HHHHHHHS CS
  OB_NTP_bind   1 lraillaGlypqiarkdpskkdyktartktrvfihpsSvlaknekekepewvvytelvettklylrdltaidpawLllfa 80 
                  l+a+l+aGl+p++ + +  k ++   ++k+ v+ihpsS ++   + +e+ w+vy+e+v t k++++d+ta++++ L lf+
   KOO25225.1 688 LKAVLCAGLFPNVLKAKSGKGGLELNQQKQAVAIHPSSFNR-GAQRFESGWLVYHEKVATGKVFVHDVTAVTSLDLFLFG 766
                  79************77777777888889*************.6999********************************98 PP

>> Helicase_C  Helicase conserved C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.8   0.0   5.6e-16   7.8e-13      11     110 ..     337     461 ..     321     462 .. 0.84

  Alignments for each domain:
  == domain 1  score: 48.8 bits;  conditional E-value: 5.6e-16
                 HHTTTTSEEEEEESSHHHHHH.......HHHHHHHTTSTEEEESTTSTHHHHHHHHHHHHTTSSSEEEESGGGTSSSTSTTESEEEESSSSSSH..... CS
  Helicase_C  11 kleeeggkilifvntidrlek.......vklllekkgikvavlhgelpqnereeileqfnkgesdvLiatdvaerGidipkvnlVinfdlprnv..... 97 
                 + + e+g +l+f++  +++          + l  ++ + v++lh++l+  e+ +++e +  g ++v++at++ae++i+i+++ +Vi+ +  +++     
  KOO25225.1 337 DDTYEEGAVLVFLPGLSDITTvlglcqaDRRLGDTRRFCVLPLHSSLSPAEQSAVFETMPPGVRKVVLATNIAETSITIDDAVFVIDSGRAKQMlfneq 435
                 67778999*********77544222222344445559******************************************************88888889 PP

                 .............HHHHHHHTTSSST CS
  Helicase_C  98 .............tsyiqriGRtgRa 110
                              +++ qr+GR+gR+
  KOO25225.1 436 kqmrrlvdvwisqAEARQRAGRAGRV 461
                 99999********************7 PP

>> HA2  Helicase associated domain (HA2)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.4   0.0   1.4e-15   1.9e-12       3      66 ..     531     592 ..     529     648 .. 0.79

  Alignments for each domain:
  == domain 1  score: 47.4 bits;  conditional E-value: 1.4e-15
         HA2   3 elLvalgALdeegnlTelGrkmaelPlsprlakmLlaaaeleegcldevitivAalsveeifle 66 
                   L++  ALde+++lT+lGr++a+lP++  +++++l++a l  +c+ +++ i+Aals +++   
  KOO25225.1 531 LGLQRCAALDENEQLTPLGRHLAALPVDIGVGRLILYGALL--RCAWPILLIAAALSDRSPPRA 592
                 569999********************************777..**************7776433 PP

>> DEAD  DEAD/DEAH box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.1   0.2   5.4e-14   7.4e-11      11     170 ..      70     220 ..      60     225 .. 0.80

  Alignments for each domain:
  == domain 1  score: 42.1 bits;  conditional E-value: 5.4e-14
                 HHTTCEEEEEESTTSSHHHHHHHHHHHHHHHSTTSTS-EEEEEESSHHHHHHHHHHHHHHTTT.STSEEEEEETTSSHHHHHHHHHTTCSEEEEEHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD  11 ilgggdvlvaaeTGsGKTlaflipvlqivyetkgktgpkalivePtreLaeqtlnnlkkfkky.idlrvlliiggvaardqlskldngvdivvgtpgrl 108
                 + +g+  +v++eTGsGK++     +l++ +e+ +   + +++  P r  a   ++++ +   + ++ r    + g + r + ++  +++++++ t+g  
  KOO25225.1  70 MEDGQVAVVCGETGSGKSTQVPQMLLEHALESGRGGVTSVICTQPRRIAATSLARRVAQERGEqAGARGA--MVGYQVRLESKRT-ESTKLLFCTTGIA 165
                 44677889**********************97666667899999**********9996655542776655..4456677777777.779********** PP

                 HHHH.HCTSSHCTTEEEEEEETHHHHHHTTTHHHHHHHHHHSHHHCTTSTTTSEEEEEESSBS CS
                 xxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD 109 ddll.stgklnlsqvrflVlDEadrlldqgfsdfinrilnqlpqitcdgklqrqvivlSATlp 170
                 ++++ s+    l+ v+ +V+DE+++   q   d++  +l++l  +  d k    v+++SAT++
  KOO25225.1 166 LRMMlSDPP--LQGVSHVVVDEVHERDTQ--TDQLLLLLRELMPTRPDLK----VVLMSATVQ 220
                 996647666..***************999..9999999999954444444....*******97 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.8   0.1   7.3e-09     1e-05       4     128 ..      72     215 ..      69     222 .. 0.79

  Alignments for each domain:
  == domain 1  score: 25.8 bits;  conditional E-value: 7.3e-09
      AAA_22   4 tagilvvtGesGtGKTtllrrlleqldeeakaeeerpevvfvtlpsst..sskdllrellralglelka..............erlsseellealeqal 86 
                 + ++ vv+Ge+G+GK+t + ++l ++      e  r +v +v ++++     ++l+r+++++ g+++ a              ++ s++ l+ +   al
  KOO25225.1  72 DGQVAVVCGETGSGKSTQVPQMLLEHAL----ESGRGGVTSVICTQPRriAATSLARRVAQERGEQAGArgamvgyqvrleskRTESTKLLFCTTGIAL 166
                 67899**************999999843....334777779999999999***************9999**********98765555555554444444 PP

      AAA_22  87 rarav......ielliiDEaqhlr..seealeeLrsllnlsrkgvqliLv 128
                 r          ++ +++DE++  +  ++++l  Lr+l+   r +++++L+
  KOO25225.1 167 RMMLSdpplqgVSHVVVDEVHERDtqTDQLLLLLRELMP-TRPDLKVVLM 215
                 444447999999**********87644777777788766.5667777765 PP

>> AAA_19  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.1   0.2   4.5e-07   0.00062       9     123 ..      72     198 ..      61     213 .. 0.66
   2 ?   -3.3   0.0       7.3     1e+04      95     128 ..     767     802 ..     712     808 .. 0.66

  Alignments for each domain:
  == domain 1  score: 20.1 bits;  conditional E-value: 4.5e-07
      AAA_19   9 kekvllvtaGpGtGK.TrvlkhivallvelggvkpeeillvaftgrAakelrerlaalgae......atTiHrlal....ldfddlltealelle.... 92 
                   +v +v +  G+GK T+v ++ +++++e g+  + ++++  + + Aa  l+ r+a+  +e      a       +    + ++++ te  +ll     
  KOO25225.1  72 DGQVAVVCGETGSGKsTQVPQMLLEHALESGRGGVTSVICTQPRRIAATSLARRVAQERGEqagargA-------MvgyqVRLESKRTESTKLLFcttg 163
                 4678899999*****445667889*******999999999999999******9995544444443331.......433342222333333333335566 PP

      AAA_19  93 ....eaeeekklqeeellivDEfqdvdelqyrLlk 123
                        ++ +lq   +++vDE+ + d +  +Ll 
  KOO25225.1 164 ialrMMLSDPPLQGVSHVVVDEVHERDTQTDQLLL 198
                 6666555789996666*******999966666553 PP

  == domain 2  score: -3.3 bits;  conditional E-value: 7.3
      AAA_19  95 eeekklqeeellivDEfqdvd..elqyrLlkallge 128
                 +e + l+++  +i+D   d+   +    L+kal ++
  KOO25225.1 767 AEPQVLHAQHKVIIDGWIDLRisPRTAVLFKALRKQ 802
                 344556555588888888876656777777777654 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.5   0.9   9.6e-07    0.0013       5     114 ..      60     205 ..      56     222 .. 0.65
   2 ?   -3.0   0.2       3.6   4.9e+03     152     183 ..     436     472 ..     422     479 .. 0.54

  Alignments for each domain:
  == domain 1  score: 18.5 bits;  conditional E-value: 9.6e-07
      AAA_30   5 eQaaavealltsgdrvavltGpAGtGKttalkal..reaweaag............grviglAptgkaAkvLaeelgieastiakllkrlk........ 81 
                 +Q +a  ++++++ +vav+ G  G+GK+t + ++  ++a+e+ g            +r+++ +   ++A++ +e++g++++ +   ++  +        
  KOO25225.1  60 SQLEAQVRVAMEDGQVAVVCGETGSGKSTQVPQMllEHALES-GrggvtsvictqpRRIAATSLARRVAQERGEQAGARGAMVGYQVRL-Eskrtestk 156
                 699999999999999**************9987754555555.4469955555555555555555555555556666644444433322.135556666 PP

      AAA_30  82 ...............grarlepgtllivDEagmvdt..kqlaallkaaek 114
                                +   l+  + ++vDE+   dt  +ql  ll+++  
  KOO25225.1 157 llfcttgialrmmlsD-PPLQGVSHVVVDEVHERDTqtDQLLLLLRELMP 205
                 7777778999999852.456667999999998876511455555555544 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 3.6
      AAA_30 152 tevvRqkeseeraaalalregdae.....ealealad 183
                 ++++R  + ++ +a  + r g+a      ++++ + +
  KOO25225.1 436 KQMRRLVDVWISQAEARQRAGRAGrvragHVFKLYTR 472
                 4555555556666655555555553334344555554 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.6   2.3   2.8e-06    0.0038       9     163 ..      59     205 ..      56     214 .. 0.55
   2 ?   -1.7   0.1       2.4   3.4e+03      59      59 ..     613     613 ..     511     733 .. 0.59
   3 ?   -1.0   0.0       1.4     2e+03      67     100 ..     789     822 ..     771     888 .. 0.72

  Alignments for each domain:
  == domain 1  score: 17.6 bits;  conditional E-value: 2.8e-06
      AAA_16   9 leqLlsalervrsgrpelvllsGesGvGKsslv.rellralekdg.giflrgkcdqlesaipysalaqalareellrqlldeaesaeleawrekleeal 105
                 ++qL++ ++ v++ ++++ ++ Ge G+GKs+ v ++ll+++ ++g g +++  c+q ++     + a+ l ++++ ++ +++a ++ +       + +l
  KOO25225.1  59 ISQLEAQVR-VAMEDGQVAVVCGETGSGKSTQVpQMLLEHALESGrGGVTSVICTQPRR-----IAATSL-ARRVAQERGEQAGARGAMVGY---QVRL 147
                 678888886.77777899**************************879999999999911.....133333.223333333332221111111...1111 PP

      AAA_16 106 aavpelagaea.......srllellkrllallsrderp.lvlvlDdlqwadeaslqllaaLlrlle 163
                 +      ++              +l+ +l+  +  +     +v+D+++  d+++ qll +L +l+ 
  KOO25225.1 148 E------SKRTestkllfCTTGIALRMMLSDPPL-Q-GvSHVVVDEVHERDTQTDQLLLLLRELMP 205
                 1......111111122222233333333322222.1.12566777777777777776666666555 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 2.4
      AAA_16  59 k 59 
                 k
  KOO25225.1 613 K 613
                 1 PP

  == domain 3  score: -1.0 bits;  conditional E-value: 1.4
      AAA_16  67 ipysa.laqalareellrqlldeaesaeleawrek 100
                  p+ a l +al r++l++ ++ + +++e+e+++ +
  KOO25225.1 789 SPRTAvLFKAL-RKQLFELMALRIAANEREDAQSA 822
                 45555477788.77999999999888777777664 PP

>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   0.0   3.7e-05     0.051       3      36 ..      65      98 ..      64     136 .. 0.83

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 3.7e-05
                EEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS- CS
                xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  3 nvslklkegekvaivGenGaGKStLlkllagllk 36
                +v + ++ g++ ++ Ge+G+GKSt +  ++ ++ 
  KOO25225.1 65 QVRVAMEDGQVAVVCGETGSGKSTQVPQMLLEHA 98
                678999******************8766655555 PP

>> FtsK_SpoIIIE  FtsK/SpoIIIE family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.0   0.00023      0.32      42      64 ..      76      98 ..      56     123 .. 0.86

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.00023
                  EEEE--TTSSHHHHHHHHHHHHH CS
  FtsK_SpoIIIE 42 llvaGatgsGKStalntLilSla 64
                   +v+G tgsGKSt +  ++l  a
    KOO25225.1 76 AVVCGETGSGKSTQVPQMLLEHA 98
                  489************99998655 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0   0.00027      0.37      19      38 ..      70      89 ..      61      95 .. 0.76

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00027
      AAA_29 19 idlkg.atlltGpsGsGKSTl 38
                ++ +g + ++ G++GsGKST 
  KOO25225.1 70 ME-DGqVAVVCGETGSGKSTQ 89
                33.346999***********5 PP

>> Dynamin_N  Dynamin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.0   0.00043       0.6       2      37 ..      77     112 ..      76     213 .. 0.87
   2 ?   -2.3   0.0       2.9     4e+03      93     114 ..     334     355 ..     254     363 .. 0.72

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.00043
                 EEEEBTTTTHHHHHHHHHTS--S---SSS---S-EE CS
   Dynamin_N   2 avvGsqSsGKSSvlnaLlgedilprgpnptTrrple 37 
                 +v+G++ sGKS+ + ++l e+ l +g + +T  +++
  KOO25225.1  77 VVCGETGSGKSTQVPQMLLEHALESGRGGVTSVICT 112
                 79*****************************99886 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 2.9
                 EEEEETTS-SEEEEE---B-SS CS
   Dynamin_N  93 lkilsllvkgltlvDlPGldsv 114
                  +i +  ++g +lv lPGl ++
  KOO25225.1 334 GYIDDTYEEGAVLVFLPGLSDI 355
                 4677778888889999998876 PP

>> ATPase  KaiC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   0.0    0.0003      0.41      16      52 ..      70     106 ..      58     123 .. 0.87

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.0003
      ATPase  16 ipegrvvlitGepGtGKtifalqFlikgaekygepgv 52 
                 + +g+v  ++Ge+G+GK++ + q l++ a + g+ gv
  KOO25225.1  70 MEDGQVAVVCGETGSGKSTQVPQMLLEHALESGRGGV 106
                 668999*************************999987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (896 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       548  (0.030565); expected 358.6 (0.02)
Passed bias filter:                      434  (0.0242066); expected 358.6 (0.02)
Passed Vit filter:                        56  (0.00312343); expected 17.9 (0.001)
Passed Fwd filter:                        13  (0.000725082); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 0.68u 0.29s 00:00:00.97 Elapsed: 00:00:00.42
# Mc/sec: 6396.57
//
Query:       KOO25226.1  [L=68]
Description: hypothetical protein Ctob_010993 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
     0.0087   16.1   1.0      0.011   15.8   1.0    1.2  1  SICA_C    SICA C-terminal inner membrane domain


Domain annotation for each model (and alignments):
>> SICA_C  SICA C-terminal inner membrane domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   1.0   5.9e-07     0.011     102     134 ..       2      34 ..       1      40 [. 0.81

  Alignments for each domain:
  == domain 1  score: 15.8 bits;  conditional E-value: 5.9e-07
      SICA_C 102 elleeeqvpkeevllegvplevvsieevpslss 134
                 el++ e vp e v +e vp+e+v++e vp +s+
  KOO25226.1   2 ELVPMELVPVELVPMELVPMELVPMELVPVEST 34 
                 778888899999999999999999999887765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (68 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                        74  (0.00412739); expected 358.6 (0.02)
Passed bias filter:                       59  (0.00329076); expected 358.6 (0.02)
Passed Vit filter:                         8  (0.000446204); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.33u 0.24s 00:00:00.57 Elapsed: 00:00:00.40
# Mc/sec: 507.04
//
Query:       KOO25227.1  [L=1186]
Description: myosin-like protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
   9.8e-179  595.8   0.0    5.4e-79  266.2   0.0    3.0  3  Myosin_head  Myosin head (motor domain)
      4e-06   27.1   0.0      5e-05   23.6   0.0    2.4  1  BTB_2        BTB/POZ domain
    2.8e-05   23.9   3.2    5.6e-05   22.9   3.2    1.5  1  Myosin_N     Myosin N-terminal SH3-like domain
  ------ inclusion threshold ------
      0.077   13.3   0.0       0.21   11.9   0.0    1.7  1  AAA_22       AAA domain
        0.2   12.0   0.1        0.2   12.0   0.1    2.9  3  AAA_16       AAA ATPase domain


Domain annotation for each model (and alignments):
>> Myosin_head  Myosin head (motor domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  266.2   0.0   1.5e-82   5.4e-79       2     277 ..      61     350 ..      60     364 .. 0.89
   2 !  242.7   0.0     2e-75     7e-72     283     549 ..     388     666 ..     377     684 .. 0.87
   3 !   83.3   0.0   3.2e-27   1.2e-23     547     677 .]     779     919 ..     757     919 .. 0.90

  Alignments for each domain:
  == domain 1  score: 266.2 bits;  conditional E-value: 1.5e-82
                  SBGCGSSS-SHHHHHHHHHHHHHTT--EEEETTEEEEE--SS--STSSHHHHHHHTTS-GGGSSSSHHHHHHHHHHHHH.HHTSEEEEEEESSTTSSH CS
  Myosin_head   2 edlveLsllneasvlenlkkRykkdliYtysglvlvavnPykklkiysedvikaykgkkreelpPHifaiadeayrsll.edkenqsilisGEsGAGK 98 
                   d+++L +l+e+ vl+nl+ R+++ + Yty++++lvavnP + +   + ++++a    + + + PH +a+a++ayr+ll  +  +qsi++sGEsGAGK
   KOO25227.1  61 ADMTSLWHLHEPGVLHNLRGRFERLEPYTYVAHLLVAVNPLQPVAQPEMETVRA--APSLSVVAPHPYAVAESAYRALLlPQATSQSIVVSGESGAGK 156
                  59****************************************988877777776..5677889*************976267889************* PP

                  HHHHHHHHHHHHHHSSSSSC..TCTTHHHHHHHHHHHHHHHHHEEEESSETTEESSEEEEEEEEETTS...........SEEEEEEEEECE-GGGGT- CS
  Myosin_head  99 teatKkvlqylasvaeskek..veeeeleekilqsnPilEafGnAktvrndnssRFGKfieiefdakg...........kiagakietYLLEksRvvk 183
                  te+tK vl+yla  a+ +++  + +++l+e+ilq+nPi E++Gn kt rn nssRFGK+i+++f  +g           ++  ++ietYLLE sRv++
   KOO25227.1 157 TESTKIVLRYLAWRAAAAASkaSGSANLNERILQANPIAESLGNGKTQRNHNSSRFGKYIRLSFGRAGgraatgggaplELLVGSIETYLLETSRVIR 254
                  ***********9866655442267789*************************************987633222222222344579************* PP

                  --TT--SBHHHHHHHHCSTHHHHHHTT--..TCCGSTTTTTTSSSSBTTS-HHHHHHHHHHHHHHHT--HHHHHHHHHHHHHHHHHCTSSEEEECT CS
  Myosin_head 184 qakeERnyHiFYqllagaseeekkelkle..dvkdyaylsqsgeltvdgiddseefketkkaldilglseeeqkeifrivaailhlGniefkkeak 277
                  q ++ERn+HiFY++lagas+ +++++++    +  ++ ls+sg+++v+   d++ f e+++ l+ lg+ +e+q++++  +a++lhlGn+ef  +++
   KOO25227.1 255 QLPSERNFHIFYEMLAGASAAQRTQWRVPtnGPMGFNVLSHSGCVSVPQHPDAQCFAELTHGLKCLGVPSEQQASLLACLAGVLHLGNLEFVASPS 350
                  ***************************9766899*********************************************************98765 PP

  == domain 2  score: 242.7 bits;  conditional E-value: 2e-75
                  ESSHHHHHHHHHHHTS-HHHHHHHHHSEEEEET....TEEEEEE-BHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSS.....-S-SEEEEEEEE CS
  Myosin_head 283 ledeeklekaaellgvdaeelekalvkrriktg....kevvskalnveqaevardalakaiyerlFdwlverinkslekkk.....eekksfiGvLDi 371
                   +++ + ++a++llg++a+ le+ l+ r+++ +    +e+v++ l++ + +  r+ l kaiy+ lF+w +  in++l+ ++      +++ fiG+LDi
   KOO25227.1 388 ESADGAFATACALLGLEASALERGLTYRSMTMQrgadSETVHVVLDTDKCAAMREGLMKAIYSSLFEWAIAFINTQLSGTTsqdasAASAPFIGLLDI 485
                  555667889********************999888999***************************************98874444345678******* PP

                  E-B---SSB-HHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHTTSSGCGS-GGGCCHHHHHHHHSSST....SHHHHHHHHHTSTTS-HHHHHHHHHHH CS
  Myosin_head 372 aGFEifeknsFEqlcinyvnEkLqqlFnelvlklEqeeYvrEgiewkfidfgldnqaiidLiekkpl....GilslLdeecllpkatdetfleklvka 465
                  +GFE f +ns Eql in++nEkLq +Fn +v+ +Eqe Yv Egi w+ + +  dn  +i Li +k+     G+l lLde c+lpk+td +++e+l++a
   KOO25227.1 486 FGFESFATNSLEQLLINFANEKLQATFNLHVFAAEQELYVAEGIAWRAVAW-PDNAGCIALIAHKERgvapGLLHLLDEMCRLPKTTDAELAERLHSA 582
                  ***************************************************.7*********997651111679************************ PP

                  HTTSTTEEETTSTTTTTEEEEEETTCEEEEE-TTHHHHHH----HHHHHHHHTSSSHHHHHHCCSHCHB--.........CSSS CS
  Myosin_head 466 fskhakfeksrlkkgeakFiikHyAgkveYevegfleKnkDtlnedlvellksskkkllaelfkeeekeakaeakksekkkkkk 549
                  +  +a f k++ ++ +++F+i HyAg+v+Y+vegfl Kn+ +l++dlv+l++ss+++ll+++f e+e  a+++a+++ ++++++
   KOO25227.1 583 HVGNAFFPKPDPRRLKDSFRILHYAGEVTYSVEGFLAKNNGSLSQDLVALCQSSSDPLLSQIFLEAEARAEQKAEAALAASTAR 666
                  *****************************************************************9984444443333322222 PP

  == domain 3  score: 83.3 bits;  conditional E-value: 3.2e-27
                  SSSECCCCCSBHHHHHHHHHHHHHHHHCTSEEEEEEEE-SSSS--TT---HHHHHHHHHHTTHHHHHHHHHHSSSEEEEHHHHHHHHGGGSTTSS-SS CS
  Myosin_head 547 kkkkkkkkfktvgskfkeslaeLmktlestnphfvRCikpnekkkakkldeslvleqlrclGvlegirirraGfpnRitfeefvqrYkllakkelkkl 644
                  ++ + +k+f++vg +f ++++ L+++l +t  +f+RC+kpn +++++ +d++  l+qlr +G+l+  ++ ++G+p+Ri+++e+ +rYk ++++++++ 
   KOO25227.1 779 QTPRGQKSFQSVGLTFVRQMGCLVSELDATRCNFIRCLKPNAQMAPRVFDNTYSLTQLRHTGLLQCCELLKHGYPTRIAYAEVAERYKPVLQQHCPQV 876
                  44455679*************************************************************************************99998 PP

                  ...........SSSHHHHHHHHHHHTTS-GCGEEECSSEEEET CS
  Myosin_head 645 ..........lkedakkaveailkeleldkeeykiGktKiFfr 677
                            ++ ++ + ++a+l   e+ k  y++G tK Ffr
   KOO25227.1 877 ltlpwlrvsdVTLSNARLTSAVLYGFEVPKALYQLGATKAFFR 919
                  88999887776778888999999999****************8 PP

>> BTB_2  BTB/POZ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.6   0.0   1.4e-08     5e-05       8      89 ..    1061    1156 ..    1057    1160 .. 0.79

  Alignments for each domain:
  == domain 1  score: 23.6 bits;  conditional E-value: 1.4e-08
                  EEEEEEHHHHHTSTTSTTTSSGG.....GGEETTTTEEEE-S-HHHHHHHHHHHHS..S-B--.............-TTS-HHHHHHHHHHHT--TT CS
       BTB_2    8 trfetskstLsrkpdtlLgkllktee.lddydeetneyffDRspklFetiLnyyrtg.gkLhr.............peevelkslleElefygleel 89  
                    f++ + +L+    t ++++ + +  +d+ ++++++y++ Rs k+F ++L+y+r+g  +L+r             ++e+el ++ +E++fygl++l
  KOO25227.1 1061 QVFSVRSAALK-AAGTHFRAFFTDAAnVDANRDDDGHYLVRRSWKHFGAVLEYIRDGsCELPRgytpstydnrpasSDEQELLEFVREAAFYGLQPL 1156
                  46889999999.89999999998775699***************************99999864433333333333467888899999999999877 PP

>> Myosin_N  Myosin N-terminal SH3-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.9   3.2   1.6e-08   5.6e-05       4      39 ..       8      44 ..       6      44 .. 0.91

  Alignments for each domain:
  == domain 1  score: 22.9 bits;  conditional E-value: 1.6e-08
                EEETTSTTS-EEEEEEEEESSE.EEEEETTSEEEEEE CS
    Myosin_N  4 VWVpDpkegyvkGeIkeeeGdk.vtVetedGktvtVk 39
                VW++Dp + +v+G++  + G++ + V t +G tvtV+
  KOO25227.1  8 VWIRDPVDSWVAGKVEAQVGNStLKVLTAKGTTVTVD 44
                9***************8888555************96 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   5.8e-05      0.21       5      32 ..     143     169 ..     140     218 .. 0.75

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 5.8e-05
      AAA_22   5 agilvvtGesGtGKTtllrrlleqldee 32 
                  +++vv GesG+GKT + + +l+ l  +
  KOO25227.1 143 SQSIVVSGESGAGKTESTKIVLRYLA-W 169
                 689**************998887663.3 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.1   5.6e-05       0.2      24      63 ..     141     181 ..     129     279 .. 0.65
   2 ?   -2.7   0.3       1.8   6.6e+03      80     115 ..     639     674 ..     619     688 .. 0.57
   3 ?    0.3   0.2      0.22     8e+02      44     126 ..     970    1084 ..     966    1099 .. 0.54

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 5.6e-05
      AAA_16  24 p..elvllsGesGvGKsslvrellralekdggiflrgkcdql 63 
                    +++++sGesG GK+   + +lr+l  + + +++ k+  +
  KOO25227.1 141 AtsQSIVVSGESGAGKTESTKIVLRYLAWR-AAAAASKASGS 181
                 33489***************9999866655.44433333333 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 1.8
      AAA_16  80 ellrqlldeaesaeleawrekleealaavpelagae 115
                  ll q+  eae+++ + + ++l +++a v++ ++a+
  KOO25227.1 639 PLLSQIFLEAEARAEQKAEAALAASTARVDASRAAK 674
                 455666666555555555555555544444444333 PP

  == domain 3  score: 0.3 bits;  conditional E-value: 0.22
      AAA_16   44 llralekdg.giflrgkcdqlesaipysalaqalareellrqlldeaesaeleawrekleeala...............................av 108 
                  l+r++++++ + ++rg++++ + a++++ + ++  re   +  l+ a++a+lea+r +  +a+                                +v
  KOO25227.1  970 LHRSVQAQRrWAAARGHAKRVQYATELAKIQRLR-REPPAATRLQSAAEAALEAARPATVGAVMskgakrfemwvslrvglggeevgtfagtqvfSV 1065
                  6677777764778999999995555543333333.44444444444445555555554444444666666666666666666665555555544444 PP

      AAA_16  109 pelagaea.srllellkrl 126 
                  +++a ++a +++++ ++++
  KOO25227.1 1066 RSAALKAAgTHFRAFFTDA 1084
                  4444444455555555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1186 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       604  (0.0336884); expected 358.6 (0.02)
Passed bias filter:                      390  (0.0217525); expected 358.6 (0.02)
Passed Vit filter:                        55  (0.00306766); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.79u 0.28s 00:00:01.07 Elapsed: 00:00:00.44
# Mc/sec: 8166.92
//
Query:       KOO25228.1  [L=456]
Description: cell cycle checkpoint control protein rad9a [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.9e-49  167.0   0.0    5.8e-49  166.8   0.0    1.0  1  Rad9      Rad9
  ------ inclusion threshold ------
      0.043   13.5   0.0      0.075   12.7   0.0    1.3  1  PCNA_N    Proliferating cell nuclear antigen, N-terminal doma
       0.24   11.8   0.0       0.24   11.8   0.0    1.9  2  C4        C-terminal tandem repeated domain in type 4 procoll


Domain annotation for each model (and alignments):
>> Rad9  Rad9
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  166.8   0.0   9.7e-53   5.8e-49       4     250 .]      23     286 ..      20     286 .. 0.93

  Alignments for each domain:
  == domain 1  score: 166.8 bits;  conditional E-value: 9.7e-53
        Rad9   4 alqclsrigdelyleisedglelrtvnssrSayalvtlkksfFdkyekevseqirckilvKsvlsvfrslsakektvekvkisidekksr......... 93 
                 +lqcl r+g++l+le +++ l+lrt+n+++Sa+ ++tlk +fF++ye    + + +k++++ v s+frs++     v+kv +++   ++          
  KOO25228.1  23 MLQCLDRFGKDLFLECNHTELTLRTLNAAQSAFIVFTLKADFFSNYEVLPGKSASVKLHLRNVTSIFRSTA----GVDKVWLQVATGAAEegegggeaf 117
                 79******************************************************************999....9********444444456899999 PP

        Rad9  94 livqllCkhgvkkthkisledseslkavfdkettpsklriksrvLsdllehfsssleeitielakervllksyeeeekdn...kkalstelsideeeFe 189
                 + vql+C +g++k++ +s+++  s++av+dk+ +p+++ +++ vL ++l++f+ +l+e+++ +a ++++l++ ++ + d    ++  +te+ +++ e  
  KOO25228.1 118 MRVQLHCSSGLRKKFDLSFQEVTSMNAVYDKSVCPHTIGADPSVLLECLKNFPPALAEVSLVAAADSLTLQNEVDGSDDAdsdARLARTEMRLKPAELR 216
                 ************************************************************************9998877644347789*********** PP

        Rad9 190 qyqlaed.....veitlslkefkallvfaeslsaslslafdeaGkPllltik....klslleakfilaTl 250
                  y+l        v+i +sl+efka+l++   l+  + ++++++G+P++++ +        + ++++laT+
  KOO25228.1 217 LYELGPLppggaVAIAFSLREFKAVLTLIKELDHLIVAHIEAPGRPVIFNARpkvaAGLPYRMECVLATV 286
                 ****87778888**************************************99866655678999999996 PP

>> PCNA_N  Proliferating cell nuclear antigen, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   1.3e-05     0.075       6      91 ..      12     101 ..       7     108 .. 0.86

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 1.3e-05
                 ESSHHH..HHHHHHHHTTTCSEEEEEEETTEEEEEEE-TTSSEEEEEEEEGGGSSEEEE..SS-EEEEEEHHHHHHHHTTSTTTSEEEEE CS
      PCNA_N   6 leqasl..lkklleaikdlvneanfdcddsGislqalDsshvaLvslelrsegfekyrC..Drnlalgvnlnslskilkcannedsvtlk 91 
                 le  s+  l+ +l+++    ++  ++c+++ ++l++l+ ++ a++ ++l+++ f++y     +  ++ ++l +++ i++ +   d+v l+
  KOO25228.1  12 LEAHSVrtLRSMLQCLDRFGKDLFLECNHTELTLRTLNAAQSAFIVFTLKADFFSNYEVlpGKSASVKLHLRNVTSIFRSTAGVDKVWLQ 101
                 555554448999999999999************************************974478999999999*******99999998876 PP

>> C4  C-terminal tandem repeated domain in type 4 procollagen
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   4.1e-05      0.24      34      79 ..      12      57 ..       4      80 .. 0.75
   2 ?   -3.0   0.7       1.5   9.2e+03       4      20 ..     381     397 ..     380     399 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 4.1e-05
                TTEEEE--TTSGGGEESSEESS-EEEEETTGTEEEESTT-EEEEEB CS
          C4 34 agegsgqdLgspgSClekfrtapfieCegargtcnyasnkksfwLs 79
                 + +s ++L s   Cl +f +  f+eC++++ t ++ + ++s ++ 
  KOO25228.1 12 LEAHSVRTLRSMLQCLDRFGKDLFLECNHTELTLRTLNAAQSAFIV 57
                446677899********************99898888855555543 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 1.5
                 EEE-SSSS-----TTEE CS
          C4   4 avHsqteeipeCpegwe 20 
                 a Hsq+   ++ p +w+
  KOO25228.1 381 AAHSQQPYHQQQPPTWS 397
                 78***999999888886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (456 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       402  (0.0224218); expected 358.6 (0.02)
Passed bias filter:                      279  (0.0155614); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.47u 0.26s 00:00:00.73 Elapsed: 00:00:00.41
# Mc/sec: 3339.17
//
Query:       KOO25229.1  [L=468]
Description: 1-deoxy-d-xylulose 5-phosphate reductoisomerase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.4e-42  144.2   0.3    5.9e-42  143.4   0.3    1.4  1  DXP_reductoisom  1-deoxy-D-xylulose 5-phosphate reductoisomer
    1.5e-35  121.9   0.0    3.2e-35  120.9   0.0    1.6  1  DXPR_C           DXP reductoisomerase C-terminal domain
    8.8e-35  118.7   0.0    1.6e-34  117.9   0.0    1.5  1  DXP_redisom_C    1-deoxy-D-xylulose 5-phosphate reductoisomer


Domain annotation for each model (and alignments):
>> DXP_reductoisom  1-deoxy-D-xylulose 5-phosphate reductoisomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  143.4   0.3   9.8e-46   5.9e-42       1     129 []      64     193 ..      64     193 .. 0.98

  Alignments for each domain:
  == domain 1  score: 143.4 bits;  conditional E-value: 9.8e-46
                      EEEESTTSHHHHHHHHHHHHCTTTEEEEEEEESSTHHHHHHHHHHHT-SEEEESSHHHHHHHHHHHHHTTS.SSEEEESHHHHHHHHCHTT-SE CS
  DXP_reductoisom   1 vviLGsTGSIGtqtLdvieenpdkfevvalaagsnvellaeqakefkpklvavadeeaaeelkealkekel.ktevlvGeealkelaeeeeadv 93 
                      +++LGsTGSIGtqtLd+++e p+ fev++++agsnvella+q+ ef+pk+v +a +e+ +el+++++++++  ++++vG+e+ +++a ++ ad+
       KOO25229.1  64 IALLGSTGSIGTQTLDICREYPEYFEVISISAGSNVELLAKQCIEFHPKVVGLAAAEKEQELRDRIRAAGApMPQIVVGPEGQTAVAVAPGADT 157
                      789***************************************************************99765499******************** PP

                      EEE--SSGGGHHHHHHHHHTTSEEEE--SHHHHHHH CS
  DXP_reductoisom  94 vvaaivGaaGLkptlaaikagkriaLANKEsLVvaG 129
                      vv+++vG+aGL pt++aik g++iaLANKE+L+++G
       KOO25229.1 158 VVTGVVGVAGLLPTIEAIKLGRTIALANKETLIAGG 193
                      **********************************98 PP

>> DXPR_C  DXP reductoisomerase C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  120.9   0.0   5.3e-39   3.2e-35       1     114 [.     329     452 ..     329     453 .. 0.92

  Alignments for each domain:
  == domain 1  score: 120.9 bits;  conditional E-value: 5.3e-39
                 E-SS-THHHHHHHHHTTS-.......-.-----HHHHEEEEEB---TTTTCHHHHHHHHHHH-TCHHHHHHHHHHHHHHHHHTTSS-TTHHHHHHHHHH CS
      DXPR_C   1 LgtpDMrlpIayaLayper.......g.verldlaklgsltFekpdlerFpclklayealkaggtapavlnAAnEvaveaFlegkisFldIaeiieevl 91 
                 Lg+pDMrlpI y++++p+r       g  e++dl+klgs++F++pd  ++pc+ lay a+++ gt++ +lnAAnE+a e F +g  +F  I+++ie+++
  KOO25229.1 329 LGWPDMRLPILYSMSWPHRlkvdygrGiDEKFDLVKLGSMSFKAPDVVKYPCIPLAYAAGRQAGTMTGALNAANEMANELFRAGSFDFFGIPKVIEKTM 427
                 8******************877665425788******************************************************************** PP

                 HTTT......SSHHHHHHHHHHHHH CS
      DXPR_C  92 esee..kseaksledileldaeare 114
                 e ++    ++ +ledi+++da+are
  KOO25229.1 428 EAHQpdFLQNPTLEDIVRVDAWARE 452
                 *55533668899************8 PP

>> DXP_redisom_C  1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  117.9   0.0   2.7e-38   1.6e-34       1      84 []     207     297 ..     207     297 .. 0.93

  Alignments for each domain:
  == domain 1  score: 117.9 bits;  conditional E-value: 2.7e-38
                    EEE-SHHHHHHHHHSGCCCCTTEEEEEEEE--GTTTTS-HHHHCT-SHHH.......HHS-SS----HHHHHHHHHSHHHHHHHHHHHHHC CS
  DXP_redisom_C   1 ilpvDsEhsaifqllkeekkkevekiiltasGGpfrklkleeleevtvee.......alkhPnWsmGkkitvdsatlmNkglEvieakllf 84 
                    ++p DsEhsaifq+l+     ++++iiltasGG+fr+ ++e+l +++++e       a +hPnW+mG+kitvdsat+mNkglEviea++lf
     KOO25229.1 207 MTPADSEHSAIFQCLQGVPPGALRRIILTASGGAFRDFSTEQLIALNAAEpetvrkkASTHPNWDMGAKITVDSATMMNKGLEVIEAHYLF 297
                    58***************99***********************988777666667777*********************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (468 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       353  (0.0196888); expected 358.6 (0.02)
Passed bias filter:                      319  (0.0177924); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.52u 0.24s 00:00:00.76 Elapsed: 00:00:00.43
# Mc/sec: 3293.15
//
Query:       KOO25230.1  [L=41]
Description: hypothetical protein Ctob_002688, partial [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (41 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       188  (0.0104858); expected 358.6 (0.02)
Passed bias filter:                      113  (0.00630264); expected 358.6 (0.02)
Passed Vit filter:                         3  (0.000167327); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.23s 00:00:00.53 Elapsed: 00:00:00.37
# Mc/sec: 334.10
//
Query:       KOO25231.1  [L=395]
Description: DNA topoisomerase i [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    4.6e-15   55.3   0.0    3.7e-07   30.0   0.0    4.5  3  Toprim_C_rpt    Topoisomerase C-terminal repeat
    6.9e-11   42.4   0.0    1.4e-10   41.4   0.0    1.5  1  HMG_box         HMG (high mobility group) box
    5.2e-08   32.5   0.7    9.5e-08   31.6   0.7    1.4  1  SAP             SAP domain
    1.7e-06   27.7   0.3    2.9e-06   27.0   0.3    1.4  1  zf-C4_Topoisom  Topoisomerase DNA binding C4 zinc finger
    1.3e-05   25.7   0.0      3e-05   24.5   0.0    1.6  1  HMG_box_2       HMG-box domain


Domain annotation for each model (and alignments):
>> Toprim_C_rpt  Topoisomerase C-terminal repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.5   0.0      0.17   6.2e+02      14      20 ..       7      13 ..       1      23 [. 0.83
   2 !   17.0   0.0   1.2e-06    0.0044       5      50 ..      65     167 ..      64     171 .. 0.95
   3 !   30.0   0.0     1e-10   3.7e-07       1      52 [.     172     255 ..     172     260 .. 0.88

  Alignments for each domain:
  == domain 1  score: 0.5 bits;  conditional E-value: 0.17
  Toprim_C_rpt 14 RfGPYvk 20
                  RfGP+v 
    KOO25231.1  7 RFGPFVG 13
                  9****95 PP

  == domain 2  score: 17.0 bits;  conditional E-value: 1.2e-06
  Toprim_C_rpt   5 gepikvkeGRfGPYvkhgk.........................................................knasLpkgddvetitleeAle 44 
                   g +++v++G+ G Yv+ g+                                                         k+ sLp g++++++++++A  
    KOO25231.1  65 GLEVSVRNGPVGWYVQLGGnvtheqlqlppapdvkalkmvqlreelerrqmsssgrkpeliarllqakdlrhlvphKRSSLPPGTSPANLSMAMAER 161
                   679*************9889999999999999***************************************************************** PP

  Toprim_C_rpt  45 llaekr 50 
                   ll+++ 
    KOO25231.1 162 LLSLPL 167
                   **9985 PP

  == domain 3  score: 30.0 bits;  conditional E-value: 1e-10
  Toprim_C_rpt   1 hPetgepikvkeGRfGPYvkhgk................................knasLpkgddvetitleeAlellaekral 52 
                   hP+ g++i++  GRfGPYv+ ++                                  asLp+  + ++   + A +ll +k a+
    KOO25231.1 172 HPNLGHEISLHLGRFGPYVMLQGahaageasvttqdeegseaaegaeggegappyLMASLPRSVSFWDADVASASALLDAKMAR 255
                   9*******************855566666888888888899999999999*****************************99764 PP

>> HMG_box  HMG (high mobility group) box
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.4   0.0   3.9e-14   1.4e-10       1      64 [.     328     393 ..     328     395 .] 0.90

  Alignments for each domain:
  == domain 1  score: 41.4 bits;  conditional E-value: 3.9e-14
                 --SS--HHHHHHHH..HHHHHHHHSTTS-HHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHH CS
     HMG_box   1 pkRplsafflfske..qraklkaenPelknaeiskklgekWkalseeeKkkYeekaekekaryeke 64 
                 p R+++a++ ++ +   r+  +  nP+  +a ++k lg++W+als+e+K++Y++k+e+e++r + +
  KOO25231.1 328 PTRAQTAYLNYALDpaVRDVARLANPDVDVAGLAKVLGAQWRALSDEAKAPYQRKYEAERERLKDA 393
                 67999999999965337999999**************************************99876 PP

>> SAP  SAP domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.6   0.7   2.7e-11   9.5e-08       2      34 ..      99     131 ..      98     131 .. 0.94

  Alignments for each domain:
  == domain 1  score: 31.6 bits;  conditional E-value: 2.7e-11
                 TT--HHHHHHHHHHTT--TTS-HHHHHHHHHHH CS
         SAP   2 skltVaeLKeeLkkrGLptsGkKaeLieRLkey 34 
                 + l+  +L+eeL++r  ++sG+K eLi+RL+++
  KOO25231.1  99 KALKMVQLREELERRQMSSSGRKPELIARLLQA 131
                 67999*************************985 PP

>> zf-C4_Topoisom  Topoisomerase DNA binding C4 zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.0   0.3   8.1e-10   2.9e-06      11      33 ..       1      23 [.       1      27 [. 0.91

  Alignments for each domain:
  == domain 1  score: 27.0 bits;  conditional E-value: 8.1e-10
                    EEEEE-SSSEEEEESST.T---- CS
  zf-C4_Topoisom 11 LvlkrgkkGkFvGCsnYPeCkft 33
                    +vlk +++G FvGCs YP C  t
      KOO25231.1  1 MVLKFSRFGPFVGCSEYPSCGWT 23
                    8*******************765 PP

>> HMG_box_2  HMG-box domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.5   0.0   8.3e-09     3e-05       3      66 ..     327     391 ..     325     395 .] 0.87

  Alignments for each domain:
  == domain 1  score: 24.5 bits;  conditional E-value: 8.3e-09
                 -.-SS--HHHHHHHT..THHHHHHHT---SSHHHHTGGGHHHHHHS-HHHHHHHHHHHHHHHHHHH CS
   HMG_box_2   3 kpkaarnAYalfvqe..mipelkrkGnpviglaevsklcsekWkalseeeKekYeekAkedkkryd 66 
                 kp +a+ AY+ ++++   ++ ++   np + +a   k ++ +W+als+e K +Y++k  + ++r +
  KOO25231.1 327 KPTRAQTAYLNYALDpaVRDVARLA-NPDVDVAGLAKVLGAQWRALSDEAKAPYQRKYEAERERLK 391
                 999**********984345666666.******************************9999988865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (395 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       749  (0.0417759); expected 358.6 (0.02)
Passed bias filter:                      353  (0.0196888); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.48u 0.26s 00:00:00.74 Elapsed: 00:00:00.41
# Mc/sec: 2899.84
//
Query:       KOO25232.1  [L=253]
Description: hypothetical protein Ctob_002686, partial [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (253 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       422  (0.0235373); expected 358.6 (0.02)
Passed bias filter:                      217  (0.0121033); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.40u 0.27s 00:00:00.67 Elapsed: 00:00:00.42
# Mc/sec: 1805.97
//
Query:       KOO25233.1  [L=237]
Description: calmodulin-like 5 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.2e-24   83.1   5.6    4.4e-05   22.7   0.0    4.8  5  EF-hand_1     EF hand
    1.1e-22   80.2   1.1    4.5e-10   39.8   0.1    3.4  3  EF-hand_7     EF-hand domain pair
    1.9e-21   74.1   7.1    0.00021   21.0   0.0    4.7  5  EF-hand_6     EF-hand domain
    4.5e-20   70.2   7.4    0.00027   20.3   0.2    5.3  5  EF-hand_5     EF hand
    5.2e-17   61.4   1.7    0.00029   20.6   0.0    4.8  4  EF-hand_8     EF-hand domain pair
    2.4e-06   27.8   0.7     0.0089   16.3   0.2    2.2  2  SPARC_Ca_bdg  Secreted protein acidic and rich in cysteine Ca
  ------ inclusion threshold ------
      0.012   15.6   0.8         15    5.6   0.0    3.3  4  EF-hand_4     Cytoskeletal-regulatory complex EF hand


Domain annotation for each model (and alignments):
>> EF-hand_1  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.5   0.0     2e-08   5.1e-05       3      28 ..      67      92 ..      65      93 .. 0.92
   2 !   22.7   0.0   1.7e-08   4.4e-05       5      28 ..     106     129 ..     103     130 .. 0.90
   3 ?   -2.5   0.1         2   5.2e+03       1      10 [.     146     155 ..     146     156 .. 0.69
   4 !   21.6   0.1   3.9e-08    0.0001       2      28 ..     163     189 ..     162     190 .. 0.88
   5 !   16.0   0.0   2.5e-06    0.0063       8      27 ..     206     225 ..     205     227 .. 0.90

  Alignments for each domain:
  == domain 1  score: 22.5 bits;  conditional E-value: 2e-08
                HHHHHHHTTTSSSEEEHHHHHHHHHH CS
   EF-hand_1  3 keiFrefDkDgdGkIdfeEfkellkk 28
                 ++FrefD D++G ++  E+ +++k+
  KOO25233.1 67 AKAFREFDIDKSGSLSPFELEQAVKH 92
                69*********************997 PP

  == domain 2  score: 22.7 bits;  conditional E-value: 1.7e-08
                 HHHHHTTTSSSEEEHHHHHHHHHH CS
   EF-hand_1   5 iFrefDkDgdGkIdfeEfkellkk 28 
                 + + +D+DgdG I++ Ef ++lk+
  KOO25233.1 106 ALDCADQDGDGEISYAEFAAILKA 129
                 66889****************985 PP

  == domain 3  score: -2.5 bits;  conditional E-value: 2
                 HHHHHHHHHT CS
   EF-hand_1   1 elkeiFrefD 10 
                 el++ F+ +D
  KOO25233.1 146 ELQKEFKAID 155
                 5677787777 PP

  == domain 4  score: 21.6 bits;  conditional E-value: 3.9e-08
                 HHHHHHHHTTTSSSEEEHHHHHHHHHH CS
   EF-hand_1   2 lkeiFrefDkDgdGkIdfeEfkellkk 28 
                 l+ +FrefD D++Gk+++ E+   +++
  KOO25233.1 163 LQTAFREFDLDKSGKLSLFELELGIRS 189
                 6789****************9877765 PP

  == domain 5  score: 16.0 bits;  conditional E-value: 2.5e-06
                 HHTTTSSSEEEHHHHHHHHH CS
   EF-hand_1   8 efDkDgdGkIdfeEfkellk 27 
                  +D+D dG I++ Ef ++l+
  KOO25233.1 206 YADQDDDGEISYAEFAAALS 225
                 58**************9986 PP

>> EF-hand_7  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.8   0.1   1.8e-13   4.5e-10       4      70 ..      66     127 ..      62     128 .. 0.88
   2 ?    2.4   0.0     0.085   2.2e+02      42      55 ..     143     156 ..     135     159 .. 0.86
   3 !   35.1   0.1   5.4e-12   1.4e-08       4      69 ..     163     223 ..     160     225 .. 0.90

  Alignments for each domain:
  == domain 1  score: 39.8 bits;  conditional E-value: 1.8e-13
   EF-hand_7   4 lkeaFkelDtdgdgyldkeellrllrkifqgagegsklsdee.lellfkefDtdkdGvisfdEFlkly 70 
                 l  aF+e+D d++g+l++ el+++++      + ++++  e+ ++  +++ D+d+dG+is+ EF ++ 
  KOO25233.1  66 LAKAFREFDIDKSGSLSPFELEQAVK------HFNFPFAHEHvMQIALDCADQDGDGEISYAEFAAIL 127
                 4456**********************......778888888868899*****************9875 PP

  == domain 2  score: 2.4 bits;  conditional E-value: 0.085
   EF-hand_7  42 sdeelellfkefDt 55 
                 sd+el++ fk +D+
  KOO25233.1 143 SDKELQKEFKAIDL 156
                 799*********97 PP

  == domain 3  score: 35.1 bits;  conditional E-value: 5.4e-12
   EF-hand_7   4 lkeaFkelDtdgdgyldkeellrllrkifqgagegsklsdeelellfkef.DtdkdGvisfdEFlkl 69 
                 l++aF+e+D d++g+l+  el+  +r      + + +++ e++ ++ k+  D+d+dG+is+ EF ++
  KOO25233.1 163 LQTAFREFDLDKSGKLSLFELELGIR------SFNLPFPHEHILAIAKKYaDQDDDGEISYAEFAAA 223
                 899*******************7888......8899999999999999966*************987 PP

>> EF-hand_6  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.0   0.0   8.1e-08   0.00021       3      28 ..      67      92 ..      65     100 .. 0.90
   2 !   16.8   0.0   1.8e-06    0.0046       9      27 ..     110     128 ..     102     133 .. 0.88
   3 ?   -2.2   0.0       2.3   5.9e+03       2      10 ..     147     155 ..     146     156 .. 0.74
   4 !   20.9   0.2   8.6e-08   0.00022       2      27 ..     163     188 ..     162     191 .. 0.90
   5 !   16.1   0.0     3e-06    0.0077       8      28 ..     206     226 ..     202     234 .. 0.86

  Alignments for each domain:
  == domain 1  score: 21.0 bits;  conditional E-value: 8.1e-08
   EF-hand_6  3 reaFklfDkdgdGkidaeElrkalrk 28
                 +aF++fD d++G++++ El +a ++
  KOO25233.1 67 AKAFREFDIDKSGSLSPFELEQAVKH 92
                689*******************9984 PP

  == domain 2  score: 16.8 bits;  conditional E-value: 1.8e-06
   EF-hand_6   9 fDkdgdGkidaeElrkalr 27 
                  D+dgdG+i+++E+ ++l+
  KOO25233.1 110 ADQDGDGEISYAEFAAILK 128
                 6*****************9 PP

  == domain 3  score: -2.2 bits;  conditional E-value: 2.3
   EF-hand_6   2 lreaFklfD 10 
                 l++ Fk++D
  KOO25233.1 147 LQKEFKAID 155
                 677799988 PP

  == domain 4  score: 20.9 bits;  conditional E-value: 8.6e-08
   EF-hand_6   2 lreaFklfDkdgdGkidaeElrkalr 27 
                 l+ aF++fD d++Gk++  El   +r
  KOO25233.1 163 LQTAFREFDLDKSGKLSLFELELGIR 188
                 789******************98877 PP

  == domain 5  score: 16.1 bits;  conditional E-value: 3e-06
   EF-hand_6   8 lfDkdgdGkidaeElrkalrk 28 
                 + D+d+dG+i+++E+ +al++
  KOO25233.1 206 YADQDDDGEISYAEFAAALSD 226
                 45*****************95 PP

>> EF-hand_5  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.1   0.0   2.6e-07   0.00066       2      23 ..      67      88 ..      66      91 .. 0.87
   2 !   19.4   0.0     2e-07   0.00052       4      23 ..     106     125 ..     103     128 .. 0.86
   3 ?    0.4   0.1      0.21   5.4e+02       2      10 ..     148     156 ..     147     156 .. 0.77
   4 !   20.3   0.2     1e-07   0.00027       1      22 [.     163     184 ..     163     187 .. 0.91
   5 !   10.9   0.0   9.7e-05      0.25       8      23 ..     207     222 ..     205     225 .. 0.87

  Alignments for each domain:
  == domain 1  score: 19.1 bits;  conditional E-value: 2.6e-07
                HHHHHHH-SS-SSCE-HHHHHH CS
   EF-hand_5  2 kdtFqaiDlNgDGkIskeELkt 23
                 ++F+++D +++G +s+ EL++
  KOO25233.1 67 AKAFREFDIDKSGSLSPFELEQ 88
                578*****************87 PP

  == domain 2  score: 19.4 bits;  conditional E-value: 2e-07
                 HHHHH-SS-SSCE-HHHHHH CS
   EF-hand_5   4 tFqaiDlNgDGkIskeELkt 23 
                 +++++D +gDG Is  E+ +
  KOO25233.1 106 ALDCADQDGDGEISYAEFAA 125
                 589***************87 PP

  == domain 3  score: 0.4 bits;  conditional E-value: 0.21
                 HHHHHHH-S CS
   EF-hand_5   2 kdtFqaiDl 10 
                 ++ F+aiDl
  KOO25233.1 148 QKEFKAIDL 156
                 556*****6 PP

  == domain 4  score: 20.3 bits;  conditional E-value: 1e-07
                 HHHHHHHH-SS-SSCE-HHHHH CS
   EF-hand_5   1 lkdtFqaiDlNgDGkIskeELk 22 
                 l+ +F+++Dl+++Gk+s  EL+
  KOO25233.1 163 LQTAFREFDLDKSGKLSLFELE 184
                 6778***************996 PP

  == domain 5  score: 10.9 bits;  conditional E-value: 9.7e-05
                 H-SS-SSCE-HHHHHH CS
   EF-hand_5   8 iDlNgDGkIskeELkt 23 
                 +D + DG Is  E+ +
  KOO25233.1 207 ADQDDDGEISYAEFAA 222
                 8*************75 PP

>> EF-hand_8  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.2   0.0   0.00086       2.2      32      47 ..      70      85 ..      68      92 .. 0.86
   2 !   20.6   0.0   1.2e-07   0.00029      25      52 ..     100     127 ..      98     130 .. 0.89
   3 !   15.6   0.1   4.1e-06      0.01      28      47 ..     163     182 ..     139     183 .. 0.92
   4 !   12.5   0.0     4e-05       0.1      34      52 ..     206     224 ..     205     226 .. 0.88

  Alignments for each domain:
  == domain 1  score: 8.2 bits;  conditional E-value: 0.00086
   EF-hand_8 32 frefDtdgdGkisfeE 47
                frefD+d++G +s  E
  KOO25233.1 70 FREFDIDKSGSLSPFE 85
                9***********9666 PP

  == domain 2  score: 20.6 bits;  conditional E-value: 1.2e-07
   EF-hand_8  25 eeevdilfrefDtdgdGkisfeEFcvll 52 
                 e+ ++i ++++D+dgdG is+ EF + l
  KOO25233.1 100 EHVMQIALDCADQDGDGEISYAEFAAIL 127
                 67799*******************9866 PP

  == domain 3  score: 15.6 bits;  conditional E-value: 4.1e-06
   EF-hand_8  28 vdilfrefDtdgdGkisfeE 47 
                 +++ frefD+d++Gk+s+ E
  KOO25233.1 163 LQTAFREFDLDKSGKLSLFE 182
                 6899**************98 PP

  == domain 4  score: 12.5 bits;  conditional E-value: 4e-05
   EF-hand_8  34 efDtdgdGkisfeEFcvll 52 
                 ++D+d+dG is+ EF + l
  KOO25233.1 206 YADQDDDGEISYAEFAAAL 224
                 78*************9875 PP

>> SPARC_Ca_bdg  Secreted protein acidic and rich in cysteine Ca binding region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.2   3.5e-06    0.0089      36     111 ..      46     124 ..      11     126 .. 0.74
   2 !   10.1   0.0   0.00029      0.75      37     111 ..     144     221 ..     127     223 .. 0.74

  Alignments for each domain:
  == domain 1  score: 16.3 bits;  conditional E-value: 3.5e-06
  SPARC_Ca_bdg  36 hleelekkeeeknlkeckepvawkFsklDtnsdkvlsksELaplrapl...vklehCikpflescDadkdkkislkEwc 111
                   ++ e+++k   +  ++  + +a  F ++D ++ ++ls  EL++  + +     +eh ++  l+ +D+d d++is +E++
    KOO25233.1  46 AMLEKQRKMLAQAIETKYKLLAKAFREFDIDKSGSLSPFELEQAVKHFnfpFAHEHVMQIALDCADQDGDGEISYAEFA 124
                   333444444455555555567779*****************9866655222579***********************97 PP

  == domain 2  score: 10.1 bits;  conditional E-value: 0.00029
  SPARC_Ca_bdg  37 leelekkeeeknlkeckepvawkFsklDtnsdkvlsksELa....plraplvklehCikpflescDadkdkkislkEwc 111
                    +el+k+++   l++  + ++  F ++D ++ + ls  EL+    + ++p  ++eh  +   + +D+d+d++is +E++
    KOO25233.1 144 DKELQKEFKAIDLAAKYNLLQTAFREFDLDKSGKLSLFELElgirSFNLP-FPHEHILAIAKKYADQDDDGEISYAEFA 221
                   34455555555566666778999*******99999999987322244454.789**9999999**************97 PP

>> EF-hand_4  Cytoskeletal-regulatory complex EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.5   0.0      0.22   5.7e+02      18      61 ..      39      82 ..      34      95 .. 0.77
   2 ?    5.6   0.0    0.0057        15      47      70 ..     105     128 ..      93     131 .. 0.82
   3 ?   -3.4   0.0       3.7   9.4e+03      50      64 ..     168     182 ..     158     189 .. 0.68
   4 ?    5.5   0.0    0.0063        16      48      69 ..     203     224 ..     191     226 .. 0.82

  Alignments for each domain:
  == domain 1  score: 0.5 bits;  conditional E-value: 0.22
   EF-hand_4 18 glkpednkltgdkvapvlknskleedklekiwdladidedgkld 61
                g+++ d+ + +++   + +  + + + l+k +   did+ g+l 
  KOO25233.1 39 GVEDADKAMLEKQRKMLAQAIETKYKLLAKAFREFDIDKSGSLS 82
                56667777777777777777788888899999999***999985 PP

  == domain 2  score: 5.6 bits;  conditional E-value: 0.0057
   EF-hand_4  47 kiwdladidedgkldfeefciamr 70 
                    d ad d dg++ + ef+ +++
  KOO25233.1 105 IALDCADQDGDGEISYAEFAAILK 128
                 456899*************98776 PP

  == domain 3  score: -3.4 bits;  conditional E-value: 3.7
   EF-hand_4  50 dladidedgkldfee 64 
                    d+d+ gkl + e
  KOO25233.1 168 REFDLDKSGKLSLFE 182
                 556888888887655 PP

  == domain 4  score: 5.5 bits;  conditional E-value: 0.0063
   EF-hand_4  48 iwdladidedgkldfeefciam 69 
                   + ad d+dg++ + ef+ a+
  KOO25233.1 203 AKKYADQDDDGEISYAEFAAAL 224
                 55789*************9775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (237 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       790  (0.0440627); expected 358.6 (0.02)
Passed bias filter:                      450  (0.025099); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.43u 0.24s 00:00:00.67 Elapsed: 00:00:00.39
# Mc/sec: 1840.29
//
Query:       KOO25234.1  [L=665]
Description: sentrin sumo-specific [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.5e-29  102.7   0.0    5.5e-29  101.6   0.0    1.6  1  Peptidase_C48  Ulp1 protease family, C-terminal catalytic dom
    3.3e-13   49.9   0.1    7.8e-13   48.7   0.1    1.7  1  SAM_1          SAM domain (Sterile alpha motif)
    5.1e-13   48.9   0.1    9.2e-13   48.1   0.1    1.5  1  SAM_2          SAM domain (Sterile alpha motif)
  ------ inclusion threshold ------
       0.29   10.1   1.9        0.4    9.6   1.9    1.1  1  THRAP3_BCLAF1  THRAP3/BCLAF1 family


Domain annotation for each model (and alignments):
>> Peptidase_C48  Ulp1 protease family, C-terminal catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  101.6   0.0   1.2e-32   5.5e-29       1     186 [.     166     404 ..     166     451 .. 0.91

  Alignments for each domain:
  == domain 1  score: 101.6 bits;  conditional E-value: 1.2e-32
                    ---BHHHHHHHHHHHHHHHHH.CCCTCCCEEE--THHHHHHC..........SS.......T.CHCHHHCTTCCCCCS..-GGG-SEEEEEEEC.T CS
  Peptidase_C48   1 ewlndtvidfylkllaerles.seskaervhflntffvskLtkavkdfkknkskkkfkeskk.kdlyngvrrwtrkvnkedlfdkdiiyiPinedg 94 
                    e+lndt +d  lk ++    s s++  er+hf+n+ff+++L    ++++ nk   + k ++   ++y++v+rwt++v   dlf+kd++++Pine +
     KOO25234.1 166 EYLNDTLVDYKLKQIQ---ASlSPALLERCHFFNSFFFKLLM---QSIGGNK---RLKDPAAiAEGYKAVQRWTKSV---DLFAKDFVFVPINE-S 248
                    689***********96...3349*******************...5555555...4456666799************...**************.* PP

                    TEEEEEEEETCCC..............................................EEEEE-TTS-SSH.HHHHHHHHHHHHHHHHHCCCCCS CS
  Peptidase_C48  95 kHWvlliinlpdk..............................................tililDSlislhtvkkenrpinnlkpyLleealkkkq 144
                    +HW+l+ii+ p                                                 i +lDS++++++     ++++ lk+yL  e ++k+ 
     KOO25234.1 249 LHWSLAIIHRPGAylaswrngersaataaaaaahitttrradqlppaqlpaaarpgrepCIMYLDSMGGSKQ-----KAFQLLKIYLDLERKDKEA 339
                    ************************************************************************.....******************* PP

                    TT-........................GGGEEEEEEE-----SSCCCHHHHHHHHHHHHHCTHHC CS
  Peptidase_C48 145 kql.......................dltpfeierltkvpqqknsgDCGiyvlkfiellaegapq 186
                    k                          +++   e+  kvp q+ns+D G+y+l+f+ ++a+++p+
     KOO25234.1 340 KGTagkplkveeagsvdltaevheyrGEFDKMPEYDIKVPHQNNSVDGGPYMLQFVSRVAHEQPD 404
                    999*****************999988555555566669**********************99875 PP

>> SAM_1  SAM domain (Sterile alpha motif)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.7   0.1   1.7e-16   7.8e-13       1      63 [.     598     660 ..     598     661 .. 0.95

  Alignments for each domain:
  == domain 1  score: 48.7 bits;  conditional E-value: 1.7e-16
                 CCTTHSSHHHHHHHTTSGGGHHHHHTTTSSHHHHTTSCHHHHHHCTTTSHHHHHHHHHHHHHH CS
       SAM_1   1 skwsvedVgeWLesiglgqYadlFrageidgdaLlllteddLeklgvtllGHrkkIlyaIqrL 63 
                 ++w+ + V++WL+++gl  ++++F++ ++dg+ Ll+l+++dL++lgvt+   rk Il++ + L
  KOO25234.1 598 DTWTENVVSQWLRDLGLDVHVSAFADARVDGRLLLKLDDEDLLELGVTSKLQRKLILSRCEAL 660
                 68*******************************************************987766 PP

>> SAM_2  SAM domain (Sterile alpha motif)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.1   0.1     2e-16   9.2e-13       2      65 ..     598     660 ..     597     661 .. 0.96

  Alignments for each domain:
  == domain 1  score: 48.1 bits;  conditional E-value: 2e-16
                 GGHHHHHHHHHHHHTTTGGGHHHHHHTTCSHHHHHTTSCHHHHHHTTHHHHHHHHHHHHHHHHH CS
       SAM_2   2 eswsledvaeWLrsiglkqytdnFrdagitgaelllrlteedLkrlGitsvghrkkilkkiqel 65 
                 ++w+ + v++WLr +gl  ++ +F da ++g +lll+l+ edL +lG+ts  +rk il+ +++l
  KOO25234.1 598 DTWTENVVSQWLRDLGLDVHVSAFADARVDG-RLLLKLDDEDLLELGVTSKLQRKLILSRCEAL 660
                 68*****************************.***************************99987 PP

>> THRAP3_BCLAF1  THRAP3/BCLAF1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   1.9   8.9e-05       0.4     297     419 ..     360     485 ..     317     535 .. 0.69

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 8.9e-05
  THRAP3_BCLAF1 297 esykyrhkfekklaefeksfsdgskekye.eeekkskskvslgnresqefseerarkteelqveesakekskkeeaastdemeedvylerikkkke 391
                    e  +yr +f+k ++e +  ++   +++ + + ++++ + vs +  e+ ++ + r+r++e+ + +   k   k  + +++ em+ d+y+      +e
     KOO25234.1 360 EVHEYRGEFDK-MPEYD--IKV-PHQNNSvDGGPYMLQFVSRVAHEQPDLAGARKRRWEDAECQGGGKLGLKDLSPQDITEMRVDMYMTIKALGEE 451
                    35566677777.66655..333.34444436778888888889**************************99999999**********998666666 PP

  THRAP3_BCLAF1 392 ersakevklrkeselss.......psneneesrek 419
                    ++++k+vk++ ++e            ++ + +++ 
     KOO25234.1 452 QQAKKKVKAEGKAEG-ApsvaagvAASKRKRQKKI 485
                    667777777777773.3344433312222222233 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (665 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       808  (0.0450667); expected 358.6 (0.02)
Passed bias filter:                      526  (0.0293379); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.62u 0.28s 00:00:00.90 Elapsed: 00:00:00.40
# Mc/sec: 4965.77
//
Query:       KOO25235.1  [L=672]
Description: hypothetical protein Ctob_002682 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    6.8e-16   58.4  34.6    8.6e-07   29.4   0.1    7.9  9  Sel1          Sel1 repeat
  ------ inclusion threshold ------
       0.11   12.7   0.0       0.21   11.8   0.0    1.4  1  Glutaredoxin  Glutaredoxin


Domain annotation for each model (and alignments):
>> Sel1  Sel1 repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.4   0.1   9.6e-11   8.6e-07       5      38 .]      99     130 ..      96     130 .. 0.93
   2 !    9.2   1.8   0.00023       2.1       1      38 []     131     166 ..     131     166 .. 0.88
   3 ?   -1.3   0.1      0.46   4.2e+03      24      37 ..     193     206 ..     168     207 .. 0.73
   4 ?   -2.5   0.3       1.1   9.5e+03      29      38 .]     251     260 ..     251     260 .. 0.85
   5 !   22.0   0.6   2.1e-08   0.00019       1      36 [.     313     347 ..     313     349 .. 0.91
   6 ?   -0.6   0.1      0.28   2.5e+03      12      22 ..     395     406 ..     394     408 .. 0.81
   7 !   14.5   0.0   4.7e-06     0.042       2      38 .]     429     463 ..     428     463 .. 0.92
   8 ?    3.2   0.1     0.017   1.6e+02      19      37 ..     477     495 ..     467     495 .. 0.83
   9 ?   -3.7   0.0         2   1.8e+04       5      18 ..     608     618 ..     608     628 .. 0.71

  Alignments for each domain:
  == domain 1  score: 29.4 bits;  conditional E-value: 9.6e-11
        Sel1   5 yrLGmfylylnGlgvpkDpekAiewyekAAeqGd 38 
                 y++G  + yl G+gv kDp  Ai w+++AA++Gd
  KOO25235.1  99 YKMG--LSYLSGTGVRKDPFAAIDWLRRAANRGD 130
                 9***..666***********************97 PP

  == domain 2  score: 9.2 bits;  conditional E-value: 0.00023
        Sel1   1 aeAmyrLGmfylylnGl.gvpkDpekAiewyekAAeqGd 38 
                 a Am++LG+++    G  g  +D+ +A +wy  AA++G+
  KOO25235.1 131 AKAMAALGTLL--VSGEaG-VADEGEAGRWYDAAARKGN 166
                 68******888..999944.48***************97 PP

  == domain 3  score: -1.3 bits;  conditional E-value: 0.46
        Sel1  24 ekAiewyekAAeqG 37 
                 + A +++++A e G
  KOO25235.1 193 DHAARCFQQAGEEG 206
                 56889999998877 PP

  == domain 4  score: -2.5 bits;  conditional E-value: 1.1
        Sel1  29 wyekAAeqGd 38 
                 +y kAA+ G+
  KOO25235.1 251 LYAKAAACGS 260
                 699***9986 PP

  == domain 5  score: 22.0 bits;  conditional E-value: 2.1e-08
        Sel1   1 aeAmyrLGmfylylnGlg.vpkDpekAiewyekAAeq 36 
                 a+ m+ L+  +++l+G+g v ++++ A+ w+  AA++
  KOO25235.1 313 AAGMAGLA--ECFLYGRGgVRRNVDVAVAWFAIAAAK 347
                 578999**..*******66****************86 PP

  == domain 6  score: -0.6 bits;  conditional E-value: 0.28
        Sel1  12 lylnGlg.vpkD 22 
                 +y++G+g + +D
  KOO25235.1 395 CYEEGRGgEGRD 406
                 89****659887 PP

  == domain 7  score: 14.5 bits;  conditional E-value: 4.7e-06
        Sel1   2 eAmyrLGmfylylnGlgvpkDpekAiewyekAAeqGd 38 
                  A+ +LG   l l+G gv +  e A  ++e+AAe+ +
  KOO25235.1 429 RALVALG--KLRLEGAGVTPSTEAAATLFERAAEHQH 463
                 68899**..888**********************976 PP

  == domain 8  score: 3.2 bits;  conditional E-value: 0.017
        Sel1  19 vpkDpekAiewyekAAeqG 37 
                 v  D+  A+ w++  A++G
  KOO25235.1 477 VRGDVFAAFVWFRIGAALG 495
                 667999**********998 PP

  == domain 9  score: -3.7 bits;  conditional E-value: 2
        Sel1   5 yrLGmfylylnGl.g 18 
                 yr G  y   +G+ g
  KOO25235.1 608 YRTG--Y--SAGTdG 618
                 8899..9..999842 PP

>> Glutaredoxin  Glutaredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   2.3e-05      0.21      15      57 ..      20      64 ..      16      67 .. 0.88

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 2.3e-05
                  HHHHHHHTTGGEEEEEGCCSHHHHHHHHHHH..TSSSSSEEEETT CS
  Glutaredoxin 15 akrlLkelgvkfeeidvdkdeeireelkels..gvrtvPqvfidg 57
                  +k +L+++g ++ ++dv ++++  e +k++   gv ++P + ++ 
    KOO25235.1 20 IKSILERHGHSYVVHDVVNHPSSAEFMKRRCgtGVLSLPLLLVGK 64
                  799*************************99988888888888776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (672 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       506  (0.0282224); expected 358.6 (0.02)
Passed bias filter:                      327  (0.0182386); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.55u 0.25s 00:00:00.80 Elapsed: 00:00:00.42
# Mc/sec: 4842.99
//
Query:       KOO25236.1  [L=100]
Description: u6 snRNA-associated sm-like protein lsm2 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.7e-14   53.3   0.3    2.2e-14   52.9   0.3    1.2  1  LSM       LSM domain
    0.00039   20.5   0.0    0.00053   20.1   0.0    1.2  1  SM-ATX    Ataxin 2 SM domain
  ------ inclusion threshold ------
       0.12   12.3   0.1       0.26   11.2   0.0    1.6  2  DUF2642   Protein of unknown function (DUF2642)


Domain annotation for each model (and alignments):
>> LSM  LSM domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.9   0.3   3.7e-18   2.2e-14       2      66 ..       6      71 ..       5      72 .. 0.93

  Alignments for each domain:
  == domain 1  score: 52.9 bits;  conditional E-value: 3.7e-18
                HHHHTTTSEEEEEETTSEEEEEEEEEEETTSEEEEEEEEEEETTET.EEEEEEEEEEEGGGEEEEE CS
         LSM  2 flkklinkkvtvelkngrelrGtLkgfDqfmNlvLedveetlkdkk.ekrklglvliRGnnivlis 66
                f+k l++k+++velkn+  +rGtL+++Dq++N+ L ++++ +  +  +  ++++++iRG+ i +++
  KOO25236.1  6 FFKTLVGKEIVVELKNDLSIRGTLHSVDQYLNVKLLNISVEDVAQFpHMQSVKNCFIRGSVIKYVQ 71
                899**********************************9998876558*****************97 PP

>> SM-ATX  Ataxin 2 SM domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.1   0.0   8.9e-08   0.00053       7      74 ..       6      76 ..       2      81 .. 0.83

  Alignments for each domain:
  == domain 1  score: 20.1 bits;  conditional E-value: 8.9e-08
                HHHTTTTSEEEEEETTS-EEEEEEEEE-T.....T--EEEEEEEETTS...........-EEEEEEE-GGG CS
      SM-ATX  7 lltslvGkevevtvknGevyeGifstvsl...ekdfsvvLkmarkvkkanskssspssgeipdtliikakd 74
                ++++lvGke+ v++kn+  ++G +++v+     k ++++++ + + +  +s ++   +g++++ +  +a++
  KOO25236.1  6 FFKTLVGKEIVVELKNDLSIRGTLHSVDQylnVKLLNISVEDVAQFPHMQSVKNCFIRGSVIKYVQLPASE 76
                6889************************9888778888888888888877777777888888877777766 PP

>> DUF2642  Protein of unknown function (DUF2642)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   4.3e-05      0.26      10      38 ..       3      32 ..       2      41 .. 0.89
   2 ?   -2.7   0.0      0.94   5.6e+03      50      56 ..      58      64 ..      53      70 .. 0.59

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 4.3e-05
     DUF2642 10 vyqtlqsllgqevvvqttrg.svrGiLkdv 38
                +y  +++l+g+e+vv+ +++ s+rG+L +v
  KOO25236.1  3 FYSFFKTLVGKEIVVELKNDlSIRGTLHSV 32
                68899***********9999567****998 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 0.94
     DUF2642 50 tvfyiRi 56
                + ++iR 
  KOO25236.1 58 KNCFIRG 64
                4566764 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (100 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       478  (0.0266607); expected 358.6 (0.02)
Passed bias filter:                      371  (0.0206927); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.37u 0.27s 00:00:00.64 Elapsed: 00:00:00.41
# Mc/sec: 725.83
//
Query:       KOO25237.1  [L=1161]
Description: hypothetical protein Ctob_002680 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
      6e-13   48.7   0.0    2.2e-12   46.8   0.0    1.8  2  Exostosin     Exostosin family
    2.6e-10   40.4   0.0    5.1e-10   39.5   0.0    1.5  1  Galactosyl_T  Galactosyltransferase


Domain annotation for each model (and alignments):
>> Exostosin  Exostosin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.0      0.15   1.3e+03      29      62 ..     554     583 ..     491     590 .. 0.80
   2 !   46.8   0.0   2.4e-16   2.2e-12     217     285 ..     943    1021 ..     893    1027 .. 0.78

  Alignments for each domain:
  == domain 1  score: -1.7 bits;  conditional E-value: 0.15
   Exostosin  29 etswysaeqfllesllhsrveeyvrtsdpaeAdl 62 
                   s+y ++  l+e+l + +    +r+ dp++A++
  KOO25237.1 554 AFSQYLVDLPLIEALENHP----MRVHDPEAAEW 583
                 4578999999999999999....99999999976 PP

  == domain 2  score: 46.8 bits;  conditional E-value: 2.4e-16
   Exostosin  217 kqctkgrsked.ylellassrFClvppGdsptsrrlfdallagCIPVii.........sdqielPfedvldwrefsvfv 285 
                    +++ rs+++  ++ + ++  C+vp+Gd+ tsrrlfdal+ gC+PV++         +    lPf  ++ wr++  f+
  KOO25237.1  943 AAHAAHRSTSRhTTRTMLDAALCFVPRGDTDTSRRLFDALATGCVPVVVkvvgglpahAMLSNLPFHHTISWRRIVHFL 1021
                  22222222222499******************************************8877889**********997665 PP

>> Galactosyl_T  Galactosyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.5   0.0   5.7e-14   5.1e-10       1     163 [.      31     224 ..      31     238 .. 0.76

  Alignments for each domain:
  == domain 1  score: 39.5 bits;  conditional E-value: 5.7e-14
  Galactosyl_T   1 arRnaiRktWmnekeaeg..nriktlFlvGlsakedkkvkelvmeeaklygDivvvdl...edsYenltlKtl.tlllwavskvpeaklilkvDdDv 91 
                   arR a R tWm+++   g  + i ++F++ + + + + +  ++++e++ ygD++ +++   +++  + +  +l  +l++a++   +a++++k+DdD 
    KOO25237.1  31 ARRMAQRLTWMTSDD-VGpsGSICAMFIMRTGM-MPQPLMLAAERESAVYGDMLLANTivwNETRVRGPTLSLgWWLSYASHELRHARFVGKIDDDT 125
                   59***********96.4458*********9999.88888888*************996444454444333333268********************* PP

  Galactosyl_T  92 yvnpdkLlsllkrelidps.essvygkvlkegavirkkkskwyvseeeykfsr..........................yppyasGtlYvlsreave 161
                   y++++ L  ll +   ++s +++vy +vl  ++ +++k+++    +++++  +                           + +asG l vls+ +++
    KOO25237.1 126 YLHIPDLSALLRHVHAGVSpSAYVYLGVLTYYPRLFDKTMHAWGLNQAWNVGKwcrsndltlpahlkacgpsgcgrcigPFIFASGFLIVLSQPLLA 222
                   ***********9997777758899**************99955555555555544444555555566666666666666555666666666666666 PP

  Galactosyl_T 162 kl 163
                   ++
    KOO25237.1 223 SV 224
                   65 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1161 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       459  (0.025601); expected 358.6 (0.02)
Passed bias filter:                      269  (0.0150036); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.71u 0.26s 00:00:00.97 Elapsed: 00:00:00.44
# Mc/sec: 8003.58
//
Query:       KOO25238.1  [L=97]
Description: hypothetical protein Ctob_002681 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.032   15.1   4.7      0.032   15.1   4.7    3.2  3  SHIPPO-rpt  Sperm-tail PG-rich repeat


Domain annotation for each model (and alignments):
>> SHIPPO-rpt  Sperm-tail PG-rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.4   0.3      0.15   2.6e+03      20      29 ..       4      13 ..       2      20 .. 0.63
   2 ?   15.1   4.7   1.8e-06     0.032       1      30 [.      23      60 ..      23      61 .. 0.78
   3 ?    2.6   0.0     0.017     3e+02       4      10 ..      78      84 ..      76      93 .. 0.82

  Alignments for each domain:
  == domain 1  score: -0.4 bits;  conditional E-value: 0.15
  SHIPPO-rpt 20 PkysfGqrkr 29
                P+ sf + k+
  KOO25238.1  4 PSASFKSPKP 13
                5666666555 PP

  == domain 2  score: 15.1 bits;  conditional E-value: 1.8e-06
  SHIPPO-rpt  1 lPGPGtYkpnk.......nvpsn.ksaPkysfGqrkrd 30
                +PGPG+Y+p         n+  + ksa   sf + +++
  KOO25238.1 23 SPGPGAYDPQRtpsgsvsNLGARqKSANTSSFKSSSKR 60
                6**********998888866666667888888887765 PP

  == domain 3  score: 2.6 bits;  conditional E-value: 0.017
  SHIPPO-rpt  4 PGtYkpn 10
                PG+Y+p 
  KOO25238.1 78 PGSYSPI 84
                9****95 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (97 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       372  (0.0207485); expected 358.6 (0.02)
Passed bias filter:                      242  (0.0134977); expected 358.6 (0.02)
Passed Vit filter:                         9  (0.00050198); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.24s 00:00:00.61 Elapsed: 00:00:00.40
# Mc/sec: 724.14
//
Query:       KOO25239.1  [L=419]
Description: drap deaminase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.8e-30  105.1   0.0    4.6e-30  104.4   0.0    1.3  1  Phytochelatin    Phytochelatin synthase
     0.0034   17.5   0.0     0.0049   17.0   0.0    1.3  1  PseudoU_synth_2  RNA pseudouridylate synthase
     0.0086   16.6   0.1       0.18   12.4   0.0    2.2  2  Peptidase_C39_2  Peptidase_C39 like family


Domain annotation for each model (and alignments):
>> Phytochelatin  Phytochelatin synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  104.4   0.0   7.7e-34   4.6e-30      11     211 ..     173     412 ..     163     414 .. 0.79

  Alignments for each domain:
  == domain 1  score: 104.4 bits;  conditional E-value: 7.7e-34
                    EESSSHHHHHHHHT-SB-...TTHHHHHHH----SSCCGHHHHHHHHHHHHH.T--.......................---TTTTT-----TTTC CS
  Phytochelatin  11 iafsseeGkkllkealaegtaedyfpLaeqfetqsepayCGlaslvmvLnaL.evd.......................pkrkwkgpwrwfteell 82 
                    ++++s+ G++ll+e+      +++  L  +fe q+ pa+CG+as++mvL+a+ ++d                        +++  +     tee  
     KOO25239.1 173 VPLNSACGQRLLSECRGA-DRSAFEWLWPHFEQQRGPAMCGPASVAMVLRAVaACDgadaalrlatealvsraptkegqLTDEALAAEGQLTEE-- 265
                    799************888.899*****************************9444588888888888877766555544333333334444444.. PP

                    CGSH.......S-HHHHHHH---HHHHHHHHHTTT-EEEEEEG............GGS-HHHHHH...HHHHHCTSTT..EEEEEEEEGGGGTSSS CS
  Phytochelatin  83 ldcc.......iklekvkkeGitleelaelakcnglkvevvra............selsleefrk...lvkevlkseeedkfvvvnysRkalgqtg 156
                               ++ +kv+++G+tl+e+ +l+++ ++ + +++             +e++l++ r    +++ +l+ +   + v+vny+  + g + 
     KOO25239.1 266 ---VvlngqmvLSPHKVRSSGLTLAEMGTLLEALSVPCALTHVrgiagaagsdvsAEAELAAARAamaQLRLALHGA-PRAAVLVNYHMGVAGHRP 357
                    ...1455556799**********************9999999999*****988873344444333000333334333.3589******99998875 PP

                    .SEEEEEEEEEETTTTEEEE--S-TTT---EEEEHHHHHHHHSSEETTTTEE-EEE CS
  Phytochelatin 157 .eGHfSPigaYdeesdsvLiLDvarfkYppvWvkleeLyeamktlDkatgksRGyv 211
                     +GHfSP++aY+e +d++L+LD    +  p W   e+L++am+++D++++ sRG++
     KOO25239.1 358 fGGHFSPLAAYHEGTDRFLVLDCW-PQTEPSWLASERLWSAMAATDAESRLSRGWA 412
                    59*********************5.566899***********************97 PP

>> PseudoU_synth_2  RNA pseudouridylate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.0   0.0   8.2e-07    0.0049       2      51 ..     113     165 ..     112     166 .. 0.82

  Alignments for each domain:
  == domain 1  score: 17.0 bits;  conditional E-value: 8.2e-07
  PseudoU_synth_2   2 lvvvnKPagvpvqpeak...dgsekekettatssraeeekkelklvhRLDkat 51 
                      l++v+KPagvpv++ +    ++  +  + + ++    + + ++++ hRLD+++
       KOO25239.1 113 LLAVHKPAGVPVHHAGRyrkNSLIEILQSEHADLGLGGLSGNVHVLHRLDRQV 165
                      799*************96666666666666666677799***********986 PP

>> Peptidase_C39_2  Peptidase_C39 like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.4   0.0     3e-05      0.18       6      27 ..     202     222 ..     199     253 .. 0.84
   2 ?    2.0   0.0     0.049   2.9e+02     118     143 ..     355     380 ..     337     381 .. 0.83

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 3e-05
  Peptidase_C39_2   6 ynQldelpngCeptslamvlsy 27 
                      + Q +++p++C+p+s+amvl+ 
       KOO25239.1 202 FEQ-QRGPAMCGPASVAMVLRA 222
                      444.49**************86 PP

  == domain 2  score: 2.0 bits;  conditional E-value: 0.049
  Peptidase_C39_2 118 kftssgHlvvitGYdekgkrvyvnDP 143
                      +   +gH+  +  Y+e+++r++v D 
       KOO25239.1 355 HRPFGGHFSPLAAYHEGTDRFLVLDC 380
                      56789******************996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (419 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       437  (0.0243739); expected 358.6 (0.02)
Passed bias filter:                      347  (0.0193541); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.48u 0.23s 00:00:00.71 Elapsed: 00:00:00.39
# Mc/sec: 3220.19
//
Query:       KOO25240.1  [L=256]
Description: cephalosporin hydroxylase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    8.4e-32  110.5   0.0    9.4e-30  103.8   0.0    2.7  1  CmcI             Cephalosporin hydroxylase
    0.00045   21.2   0.0    0.00084   20.3   0.0    1.5  1  Methyltransf_24  Methyltransferase domain


Domain annotation for each model (and alignments):
>> CmcI  Cephalosporin hydroxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  103.8   0.0     1e-33   9.4e-30       5     205 ..      29     242 ..      25     243 .. 0.76

  Alignments for each domain:
  == domain 1  score: 103.8 bits;  conditional E-value: 1e-33
        CmcI   5 ykfswlgvpiiklpqDlvayQeliwelkPdliietGiahGGsalfsasllallkskrkvlaididire......kn..........rqaieahplasri 87 
                  +++++gv + + p D +a+  l+w+++P+l+ie+G+  GG+al+ a +++  + +++vl+id  +++      ++          + a ++   ++++
  KOO25240.1  29 SDITFMGVGLQQHPLDAFAIGDLLWRVRPRLLIELGTSGGGGALYYARIMRGYDPQAHVLTIDPAMNTiplvnwNHremrafcpwcKPANSTRTWRQAV 127
                 6789**********************************************************9865431111111200101111111233344567788 PP

        CmcI  88 elie...gssvdpeiveqvkslake.kekvlvilDsdHthehvlaeLeayaplvsaGsYivveDtviedlpesafsdrpwgkgnnPkeAveeflkeepe 182
                 ++++   +s+++  i++ + + a   + +vlv++DsdH +ehv +++eaya+lvs+GsY++v+Dt     p              P++A++efl ++++
  KOO25240.1 128 TYLRhlpSSATALGIARAMAANATAvGLPVLVVEDSDHVYEHVRDNIEAYASLVSRGSYLIVQDTRAGRFPG-------------PTKAIAEFLLRQKD 213
                 8876444788888999888888877689*************************************8776654.............66777777766666 PP

        CmcI 183 feidk......eieekllitvapdgfLkr 205
                 fe         ++ e++li+    gfL+r
  KOO25240.1 214 FESRGgafvrdRRPEHFLISQHSGGFLRR 242
                 654332333324899*************9 PP

>> Methyltransf_24  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.3   0.0   9.3e-08   0.00084       1     106 []      61     192 ..      61     192 .. 0.64

  Alignments for each domain:
  == domain 1  score: 20.3 bits;  conditional E-value: 9.3e-08
  Methyltransf_24   1 vEiGvysGvstlwllralrrnga.grlvavdhdpg....................aeeaaalareaglddrvrlikadseealasla....... 66 
                      +E+G++ G  +l+ +r +r ++   +++++d+                        ++ ++ +r+    +++r + + +               
       KOO25240.1  61 IELGTSGGGGALYYARIMRGYDPqAHVLTIDPAMNtiplvnwnhremrafcpwckPANSTRTWRQ--AVTYLRHLPSSA-------Talgiara 145
                      69******************999888888888776788888664444444444442222223333..222222221111.......11112122 PP

  Methyltransf_24  67 ....agsiD...llfiDgghaaeavledleallprlapggvvlfdDi 106
                          a  +    l++ D +h++e+v++ +ea   ++++g+++++ D+
       KOO25240.1 146 maanATAVGlpvLVVEDSDHVYEHVRDNIEAYASLVSRGSYLIVQDT 192
                      2222222225558899***************************9996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (256 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       489  (0.0272742); expected 358.6 (0.02)
Passed bias filter:                      468  (0.026103); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.46u 0.26s 00:00:00.72 Elapsed: 00:00:00.42
# Mc/sec: 1831.97
//
Query:       KOO25241.1  [L=614]
Description: fructose- -bisphosphatase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.7e-55  187.1   0.0      4e-55  186.5   0.0    1.2  1  6PF2K       6-phosphofructo-2-kinase
    1.1e-13   51.3   0.0    5.8e-11   42.4   0.0    2.9  2  His_Phos_1  Histidine phosphatase superfamily (branch 1)
     0.0029   17.9   0.0     0.0058   16.9   0.0    1.4  1  PDZ         PDZ domain
     0.0056   16.9   0.2      0.021   15.0   0.2    2.1  1  AAA_33      AAA domain
     0.0064   16.3   0.0      0.014   15.2   0.0    1.7  1  PDZ_6       PDZ domain


Domain annotation for each model (and alignments):
>> 6PF2K  6-phosphofructo-2-kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  186.5   0.0   1.1e-58     4e-55      10     206 ..      13     224 ..       5     243 .. 0.87

  Alignments for each domain:
  == domain 1  score: 186.5 bits;  conditional E-value: 1.1e-58
                 ..S-EEEEEESSTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHHHSS---GGGGSTT-HHHHHHHHHHHHHHHHHHHHHHHTS--.SEEEEES--- CS
       6PF2K  10 knsklvivlvGLpargKtyiskkltrylkwlgvrtkvFnvgkyrreaskalsdaeffrpdneealklreklalaalkdllaylneeeg.qvaifDAtNt 107
                  ++++vi +vGLpargK++isk++ ryl +lgv +k Fn+g+ rr++ ka +da+ff+p+n+ a++ +e++a+++l d+l++l+ + g   ++fDAtNt
  KOO25241.1  13 VSERIVIAMVGLPARGKSFISKAILRYLIFLGVACKLFNAGNKRRDKGKAGADASFFDPNNKSAQEQKEQMAMETLTDMLNWLSAQRGlACGLFDATNT 111
                 46799*******************************************************************************99995689******* PP

                 SHHHHHHHHHHHHHTT..-EEEEEEEE--HHHHHHHHHHHHTTTSGGGTTS-HHH....HHHHHHHHHHHHHTT-----.TTTTTT........SEEEE CS
       6PF2K 108 trerRklilefveenn..lkvlflesicsdeeiikeNikevklsspDYkdketee....aikdflkRlenyekqyepld.deedee........lsyIk 191
                 t  rR+ ++e++ +    +  +fles c+de+i+++N ++++++ +DYk+ +t+     a +df+ R++ yek+yep++  e d          l+y+k
  KOO25241.1 112 TVARRRAVIERCAKATpaVTLIFLESECNDESILRANYELKLTN-DDYKKATTDAerqaARDDFMGRVHAYEKVYEPISdAEADAIdatpelppLRYMK 209
                 *************99888999*********************99.***9765432223399*****************944455423334445589*** PP

                 EETTTTEEEEE---S CS
       6PF2K 192 vidvgkslvvnnvqg 206
                 ++d+gk++vv +  g
  KOO25241.1 210 IVDAGKKVVVSRCDG 224
                 **********99876 PP

>> His_Phos_1  Histidine phosphatase superfamily (branch 1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.4   0.1    0.0036        13      14      67 ..     259     315 ..     251     336 .. 0.77
   2 !   42.4   0.0   1.6e-14   5.8e-11      65     174 ..     475     584 ..     440     598 .. 0.90

  Alignments for each domain:
  == domain 1  score: 5.4 bits;  conditional E-value: 0.0036
                 -....TT----B-HHHHHHHHHHHHHHTT.....S---EEEE-SSHHHHHHHHHHHHCT CS
  His_Phos_1  14 egrlqgrtdvpLteeGreqAealaerlag.....epidaiysSplkRarqTaeliaeal 67 
                 e  + + +d+ L+e G +  +a+ e l +     +++ ++++ +l R  q ae++ ea 
  KOO25241.1 259 E--QIRGGDSRLSEAGLTFGKAAVETLMSrldttREPPVVMTGTLLRYGQMAEILREAI 315
                 3..57789******99988888887776644336666677**************99875 PP

  == domain 2  score: 42.4 bits;  conditional E-value: 1.6e-14
                 HCTT--EEE-GGGS----GGGTT-B.HHHHHH..HSHHHHHHHHH-GGG-B..S-BHHHHHHHHHHHHHHHHHHTTTSEEEEEE-HHHHHHHHHHHHT- CS
  His_Phos_1  65 ealglpveldegLrEidfGdweglttaeiaeeypeeleawlrdpadvrppg..gEsledvaaRvaaaleelaarhegetvlvVsHggvirallarllgl 161
                 +a++lpv++  +L+E++fG +egl+   +++ +pee+e +++d+ ++r+pg  g s+ d+   ++a+l  ++a+ ++  ++vV+  +v r+ll ++ g 
  KOO25241.1 475 RARNLPVHESRNLNELCFGSLEGLQGGRLRDFFPEEYELREADRLNYRYPGvgGQSYYDLIVQIRAVLLTIEASRRD--AVVVCDLAVARVLLGYFQGH 571
                 6788***********************************************************************97..8******************* PP

                 -GGGGGGB---TT CS
  His_Phos_1 162 pleelrrleldna 174
                 p++ +++l++++ 
  KOO25241.1 572 PIAGIPDLDVPPG 584
                 ******9999765 PP

>> PDZ  PDZ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   0.0   1.6e-06    0.0058      10      72 ..     349     415 ..     342     427 .. 0.84

  Alignments for each domain:
  == domain 1  score: 16.9 bits;  conditional E-value: 1.6e-06
                 SESSEEEEEETTSS....SSSSEEEEEECTTSHHHHHTSSTTEEEEEETTEETTTSHHHHHHHHHHT CS
         PDZ  10 gglGfslkggsdqr....gdkgifvsevlpggaaeadglkvGDkIlsvNgvdvenvsheeavqaikg 72 
                 g+lG+  +    +      d  + + +v+pg+ ae +g+ vG k++sv g+++e+vs  ++++ ik+
  KOO25241.1 349 GPLGMVFDHVVGHAtilkVDGYVTIFNVSPGSQAEHQGVVVGSKVVSVAGEPMEGVSRPAVMARIKE 415
                 555555555555555666778999**********************************999999997 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.2   5.8e-06     0.021       1     105 [.      18     136 ..      18     174 .. 0.55

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 5.8e-06
      AAA_33   1 lvllvGlpGsGKstlaerllkklg.....avllssdtlrrrlfg.......tdqqsktdytrvldrlyqilnelarka.lsagrnv.ildatnlsrrer 85 
                 ++ +vGlp+ GKs+ ++ +l+ l      + l +  + rr   +        d+++k+ + + ++ + ++l ++++   +++g ++ ++datn++ ++r
  KOO25241.1  18 VIAMVGLPARGKSFISKAILRYLIflgvaCKLFNAGNKRRDKGKagadasfFDPNNKSAQEQKEQMAMETLTDMLNWLsAQRGLACgLFDATNTTVARR 116
                 799*****************998855453333333333332222455555533333333334334444444455532203555665266******9777 PP

      AAA_33  86 arflklarrlgvpvrivvve 105
                 +++++   ++  +v+++++e
  KOO25241.1 117 RAVIERCAKATPAVTLIFLE 136
                 76666544344344444443 PP

>> PDZ_6  PDZ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.0     4e-06     0.014       5      39 ..     376     410 ..     372     430 .. 0.81

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 4e-06
       PDZ_6   5 VdpgsPAdrAGlrvGDiilsvNGqpveglsladva 39 
                 V pgs A++ G+ vG  ++sv G+p eg s   v 
  KOO25241.1 376 VSPGSQAEHQGVVVGSKVVSVAGEPMEGVSRPAVM 410
                 99************************998766544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (614 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       839  (0.0467957); expected 358.6 (0.02)
Passed bias filter:                      551  (0.0307323); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.62u 0.25s 00:00:00.87 Elapsed: 00:00:00.42
# Mc/sec: 4421.05
//
Query:       KOO25242.1  [L=572]
Description: cobalamin synthesis protein p47k [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
      3e-50  170.3   0.5    4.2e-50  169.8   0.5    1.2  1  cobW            CobW/HypB/UreG, nucleotide-binding domain
    1.9e-17   63.0   0.1    9.9e-17   60.7   0.1    2.3  1  CobW_C          Cobalamin synthesis protein cobW C-terminal d
     0.0012   18.8   0.0       0.34   10.8   0.0    2.3  2  RsgA_GTPase     RsgA GTPase
  ------ inclusion threshold ------
      0.028   13.4   0.2        1.2    8.1   0.1    2.2  2  MeaB            Methylmalonyl Co-A mutase-associated GTPase M
      0.029   14.6   0.0      0.071   13.4   0.0    1.6  1  AAA_28          AAA domain
      0.037   13.9   0.0      0.067   13.1   0.0    1.3  1  ATPase_2        ATPase domain predominantly from Archaea
      0.045   13.8   0.1       0.09   12.8   0.1    1.4  1  TsaE            Threonylcarbamoyl adenosine biosynthesis prot
      0.053   11.8   0.0      0.076   11.3   0.0    1.1  1  SpecificRecomb  Site-specific recombinase
       0.06   13.7   0.0       0.16   12.3   0.0    1.9  1  AAA_16          AAA ATPase domain
      0.097   12.6   0.0       0.22   11.4   0.0    1.6  1  MobB            Molybdopterin guanine dinucleotide synthesis 


Domain annotation for each model (and alignments):
>> cobW  CobW/HypB/UreG, nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  169.8   0.5   2.3e-53   4.2e-50       1     176 [.      56     260 ..      56     261 .. 0.94

  Alignments for each domain:
  == domain 1  score: 169.8 bits;  conditional E-value: 2.3e-53
                 EEEEEEESTTCCHHHHHHHHHCT--SS-EEEEESS-SSCHCCCCCCHCCCT......EEEETTTTECCHCTT-HHHHHHHHHHHHTT-SEEEEEECTTT CS
        cobW   1 pvtvltGflGsGKTtLlnhllenraglklavivNefgevsiDaellretgve.....ivelenGciCctlredllkelealeereerldviliEttGla 94 
                 pvtvl+GflG+GKTtLlnh+l+nrag+++a+ivN++  v++Dael r+ g       +vel+nGciCctlredll +l++l+ ++ r+d+ ++E++G++
  KOO25242.1  56 PVTVLSGFLGAGKTTLLNHMLNNRAGYRIAIIVNDLAAVNVDAELARNGGMLqmeekLVELTNGCICCTLREDLLSSLSSLALEQ-RFDHCIVESSGIS 153
                 79********************************************99855556677***************************9.9************ PP

                 THHHH..HTT......SHHHHHCCCECEEEEEEETTTH...................CCHCCHHHHHHHHHHTSSEEEEE-HHHHCHC..HHHHHHHHH CS
        cobW  95 ePapv..aft......eeelksdltldavvavvDaknl..................eaeeekieekaedqlaaadllvlnKtDlldeeallekleerlr 167
                 eP pv  +ft      + +l++ + l  +v+vvD++ +                  e ++++ ++++ dq+++adl+ +nK+Dl++ee+   ++++ lr
  KOO25242.1 154 EPLPVaeTFTfrdkatAVSLNDVASLHNLVTVVDGASIfeqlnsmdtlvdrgwqdvEGDQRTVAHLLCDQIEFADLITINKCDLISEEQR-GAVQAFLR 251
                 *****996667788877889999************999****************9999999***************************87.9******* PP

                 HHHTTS-EE CS
        cobW 168 qlnpeakvl 176
                 ++np+a+++
  KOO25242.1 252 RVNPDAEII 260
                 *****9986 PP

>> CobW_C  Cobalamin synthesis protein cobW C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.7   0.1   5.5e-20   9.9e-17       1      94 []     307     441 ..     307     441 .. 0.92

  Alignments for each domain:
  == domain 1  score: 60.7 bits;  conditional E-value: 5.5e-20
      CobW_C   1 issfvfrarrpfdperleellee....elpegilRaKGivwlagkpd.alvlqgvggrlrlepagawwaa............................. 65 
                 ++sf+fra+rpf+perl+++l +       +g+lR+KG+ wl+++p+ +  +q +g+ +++  ag++w a                             
  KOO25242.1 307 VTSFIFRAKRPFHPERLNAALGSrpreGALAGLLRLKGFAWLPTRPKqRAIIQVAGTIFTCV-AGPPWVAaiprkqwsqelvmkiqkdlmaaerdptgs 404
                 589********************66544449***************99**************.66666666**************************** PP

      CobW_C  66 .....ededrrseLVfIGrdld...kealeeaLdacl 94 
                       ++drrse+  IG+  d   +ea +++++acl
  KOO25242.1 405 htwdtMHGDRRSEMLCIGKFADeiiREAARAQMEACL 441
                 *******************7777779**********7 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.8   0.0   0.00019      0.34     101     122 ..      57      78 ..      40     103 .. 0.86
   2 !    5.5   0.0    0.0078        14      46      76 ..     225     254 ..     211     274 .. 0.74

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00019
                  EEEEECSTTSSHHHHHHHHCTT CS
  RsgA_GTPase 101 tsvlvGqSGvGKStLinallpe 122
                  ++vl G  G+GK+tL+n++l++
   KOO25242.1  57 VTVLSGFLGAGKTTLLNHMLNN 78 
                  79****************9886 PP

  == domain 2  score: 5.5 bits;  conditional E-value: 0.0078
                  T-EEEEEEE-GGG--HHHHHHHHHHHHHHTT CS
  RsgA_GTPase  46 giepvivlnKiDlleeeeeleelkeelealg 76 
                  +   +i +nK+Dl++ee+   ++++ l++++
   KOO25242.1 225 EFADLITINKCDLISEEQ-RGAVQAFLRRVN 254
                  45668************9.666666666655 PP

>> MeaB  Methylmalonyl Co-A mutase-associated GTPase MeaB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.1   0.1   0.00065       1.2      27      66 ..      53      90 ..      42     110 .. 0.81
   2 ?    3.0   0.0     0.023        41     166     183 ..     224     241 ..     199     299 .. 0.82

  Alignments for each domain:
  == domain 1  score: 8.1 bits;  conditional E-value: 0.00065
                S-SEEEEEEE-TTSSHHHHHHHHHHHHHCTT--EEEEEE- CS
        MeaB 27 GraqvvGltGvPGaGkstlvealglelrrrGkrvavlavD 66
                G   v  l G+ GaGk tl++++     r+G+r+a++  D
  KOO25242.1 53 GPMPVTVLSGFLGAGKTTLLNHMLN--NRAGYRIAIIVND 90
                445566689************9876..599******9765 PP

  == domain 2  score: 3.0 bits;  conditional E-value: 0.023
                 HHH-SEEEEE---HHHHH CS
        MeaB 166 leiaDiivvnkaDkkeae 183
                 +e aD+i +nk D+   e
  KOO25242.1 224 IEFADLITINKCDLISEE 241
                 79***********43322 PP

>> AAA_28  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.0   3.9e-05     0.071       3      57 ..      59     118 ..      57     129 .. 0.84

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 3.9e-05
      AAA_28   3 vitGgestGKTtlleaLaar..gyp...vvpEaareileeklakgedalpwvedllafae 57 
                 v++G  ++GKTtll+++ ++  gy+   +v + a   ++ +la+++++l+++e+l+++  
  KOO25242.1  59 VLSGFLGAGKTTLLNHMLNNraGYRiaiIVNDLAAVNVDAELARNGGMLQMEEKLVELTN 118
                 889999********9988655899866566*******************99877766655 PP

>> ATPase_2  ATPase domain predominantly from Archaea
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.0   3.8e-05     0.067      10      56 ..      45      90 ..      42     113 .. 0.83

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 3.8e-05
    ATPase_2 10 eleeilerepneiyfiYGpegsGKtaLlkeiienledkdkyviyyia 56
                ++++   ++p ++ ++ G  g GKt+Ll+++++n+  +    i +++
  KOO25242.1 45 KIRKAGGTGPMPVTVLSGFLGAGKTTLLNHMLNNRAGYRI-AIIVND 90
                56777778999************************87664.455555 PP

>> TsaE  Threonylcarbamoyl adenosine biosynthesis protein TsaE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.1     5e-05      0.09      20      42 ..      56      78 ..      38      86 .. 0.76

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 5e-05
                EEEEEEESTTSSHHHHHHHHHHH CS
        TsaE 20 dvilLeGdLGaGKTtlvrglaka 42
                 v +L+G LGaGKTtl  +++++
  KOO25242.1 56 PVTVLSGFLGAGKTTLLNHMLNN 78
                4689*************999865 PP

>> SpecificRecomb  Site-specific recombinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   4.3e-05     0.076      47     128 ..     308     390 ..     276     412 .. 0.82

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 4.3e-05
  SpecificRecomb  47 rellrallseadqlslftdaGllsrsgffselaerleekllPeapdeedlsdllsllfpkeeDaewlealddetlar.Llell 128
                     ++++ +  +  +  +l + +G  +r+g +  l +  +  +lP+ p+++ + ++  ++f+      w++a++++++++ L+  +
      KOO25242.1 308 TSFIFRAKRPFHPERLNAALGSRPREGALAGLLRLKGFAWLPTRPKQRAIIQVAGTIFTCVAGPPWVAAIPRKQWSQeLVMKI 390
                     55555555666677888999*******************************************************64266666 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0     9e-05      0.16      22      52 ..      52      90 ..      39     224 .. 0.59

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 9e-05
      AAA_16 22 grp.elvllsGesGvGKsslvrellr.alekd......g 52
                 +p ++++lsG  G GK++l+++ l+ ++  +      +
  KOO25242.1 52 TGPmPVTVLSGFLGAGKTTLLNHMLNnRAGYRiaiivnD 90
                334899***************999862333334444441 PP

>> MobB  Molybdopterin guanine dinucleotide synthesis protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   0.00012      0.22       4      44 ..      60      98 ..      57     101 .. 0.87

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00012
        MobB  4 ivgksgsGKTtLleklipelkarglrvgtiKhahhgfdvdk 44
                + g+ g+GKTtLl+++++  ++ g+r+++i  +  +++vd 
  KOO25242.1 60 LSGFLGAGKTTLLNHMLN--NRAGYRIAIIVNDLAAVNVDA 98
                67999***********98..689*******99999988886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (572 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       396  (0.0220871); expected 358.6 (0.02)
Passed bias filter:                      323  (0.0180155); expected 358.6 (0.02)
Passed Vit filter:                        52  (0.00290033); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.56u 0.28s 00:00:00.84 Elapsed: 00:00:00.43
# Mc/sec: 3994.11
//
Query:       KOO25243.1  [L=567]
Description: serine threonine protein kinase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.7e-49  168.5   0.0    2.1e-49  168.1   0.0    1.1  1  Pkinase_Tyr  Protein tyrosine kinase
    1.7e-43  148.9   0.0    2.3e-43  148.5   0.0    1.1  1  Pkinase      Protein kinase domain
      2e-05   24.5   0.0    3.4e-05   23.8   0.0    1.3  1  PX           PX domain
  ------ inclusion threshold ------
       0.33   10.8   5.9       0.38   10.6   0.0    3.2  4  APH          Phosphotransferase enzyme family


Domain annotation for each model (and alignments):
>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  168.1   0.0   4.7e-53   2.1e-49       3     259 .]      17     279 ..      15     279 .. 0.87

  Alignments for each domain:
  == domain 1  score: 168.1 bits;  conditional E-value: 4.7e-53
                  EEEEEEEESSEEEEEEEEETTTTSSEEEEEEEEESTTSSHHHHHHHHHHHHHHHTS-BTTB--EEEEEESSSSEEEEEE--TTEBHHHHHHHT..... CS
  Pkinase_Tyr   3 lgkklGeGafGkVvegtlkgekekkevkVavKtlkeeateeekeelleeakimkklkhpnivkllgvctkeepllivteyvkgGdLlkfLrkk..... 95 
                  + ++lG+Ga+G+V+ g+ +      + +Va+K+l ++  +e  ++++ee++++++l+h+niv ++g+c+  ++++i++e+++  +L + L +      
   KOO25243.1  17 YLERLGAGAYGEVHLGEFR------RKEVAIKVLVHGDLHE--DDFYEEMALLSDLRHENIVLFMGACLAPSKMCILFELCEA-SLYDLLYSPespyp 105
                  6789***************......99*******7776666..9*************************************86.89****99978888 PP

                  CTTTSBHHHHHHHHHHHHHHHHHHHHTT..EEEST-SGGGEEEEETTEEEE-STTTHEETTTSSEE...EETTSSTSGGGGS-HHHHHHSEEEHHHHH CS
  Pkinase_Tyr  96 ekekltlkdllsfalqvAkGmeyLeskk..lvHrdlaarNvLlsenkvvkisDfGLardiekddey...vkkeeaklpvkWmapEslkekkftsksDv 188
                    ++l + + +++  +vA Gm yL+s++  l+H dl + NvLl++n+++k++DfG+++ +e+  +    +  +++  + +W apE l+ + + + +D 
   KOO25243.1 106 VGTPLPVPEFVKLLREVALGMVYLHSMEqpLLHLDLKSANVLLDKNRTAKVCDFGMSHVLEDAASAaaeTGMGKGMGSPQWSAPEKLRGGAYDETADS 203
                  8899*********************987669***************************996665554435566777899******************* PP

                  HHHHHHHHHHHTTSSGTTTTSHHHH.....HHHHH.HTTEES-BBTTSBHHHHHHHHHHT-SSGGGS--HHHHHHHH CS
  Pkinase_Tyr 189 WsfGvllwEiftlgespypglknee.....vlekl.kegkrlekpekcpeelyelmkkcweedpeeRptfselvekl 259
                  +s+G++++E+++  + py+g ++ e     ++++l +     e+ + +p++l +lm +c++e+p+eRp+f+e++++l
   KOO25243.1 204 YSYGIVMFEVLS-RSLPYAGRDQYElmigiITRMLpRPALTDEQAQRWPRRLPNLMAQCMREEPSERPDFNEVLDTL 279
                  ************.679*****999833332222332333345788899************************98765 PP

>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  148.5   0.0   5.1e-47   2.3e-43       4     260 ..      18     277 ..      15     279 .. 0.89

  Alignments for each domain:
  == domain 1  score: 148.5 bits;  conditional E-value: 5.1e-47
                 EEEEEEESSEEEEEEEETTTTEEEEEEEEECHCHCHHHHHHHHHHHHHHHHHSCTTB--EEEEEEESSEEEEEEE--TTEBHHHHHH.......HHSS- CS
     Pkinase   4 leklGeGsfGkVykaveketgkivAvKkikkekakkkkekkvlrEikilkklkhpnivrlyevfeekdelylvleyveggeladlle.......rkgsl 95 
                 le+lG G++G+V  +    ++k+vA+K++ + +  +   +++ +E+++l  l+h+niv +++++  ++++++++e++e   l dll          + l
  KOO25243.1  18 LERLGAGAYGEVHLGE--FRRKEVAIKVLVHGDLHE---DDFYEEMALLSDLRHENIVLFMGACLAPSKMCILFELCEAS-LYDLLYspespypVGTPL 110
                 689***********99..7999*******9987776...458************************************77.666665476666433447 PP

                 -HHHHHHHHHHHHHHHHHHHHTT..EE-SS-SGGGEEEETTTEEEE-SGTTSEESSSSCS......BCTTTSCGGGS-HHHHTTSCBSHHHHHHHHHHH CS
     Pkinase  96 seeeakkiakqilegleylHskg..iiHrDlKpeNiLidekgelKitDFGlakelesssk......ltsfvgtseYlAPEvlkeneyskkvDvWslGvi 186
                 +  e  k++++++ g+ ylHs++  ++H DlK++N+L+d+++  K++DFG++  le   +      + + +g++++ APE l++  y++++D +s+G++
  KOO25243.1 111 PVPEFVKLLREVALGMVYLHSMEqpLLHLDLKSANVLLDKNRTAKVCDFGMSHVLEDAASaaaetgMGKGMGSPQWSAPEKLRGGAYDETADSYSYGIV 209
                 777*****************98888********************************999999999********************************* PP

                 HHHHHHSS-STTTSSHHHHHHHHHHTHHHHHHHCTSHH...HHHTTS-HHHHHHHHHHT-SSGCCSTTHHHHHT CS
     Pkinase 187 lyelltgkppfsgekgkekvekeldqlekilkilgetkeklpeaseiseeakdllkkllkkdpkkRltaeellq 260
                 ++e+l+++ p++g+++   +e ++     i+++l    ++ ++a+  ++ + +l+ ++++++p++R+ ++e+l+
  KOO25243.1 210 MFEVLSRSLPYAGRDQ---YELMIGI---ITRMLPRPALTDEQAQRWPRRLPNLMAQCMREEPSERPDFNEVLD 277
                 ************5555...5555555...445666678889999999*********************999986 PP

>> PX  PX domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.8   0.0   7.6e-09   3.4e-05      14     112 ..     470     564 ..     459     565 .. 0.90

  Alignments for each domain:
  == domain 1  score: 23.8 bits;  conditional E-value: 7.6e-09
                 ETTSSEEEEEEEEEETTSSSEEEEEEEHHHHHHHHHHHHHHHTTSTSTSSSTSGSSSSSCTTSHHHHHHHHHHHHHHHHHHHTSCHHHH..SHHHHHHH CS
          PX  14 sgskkhsyylyevelktgakewtvkRrYsdFeeLhskLlrkfprvkiPplPkkvlfgsvrkkdeefiekrrkgLeeyLqrllnhpelrn..sevlteFL 110
                 + ++ + ++++ +++  +  +wtv R+ +   eLh  L+     +  Ppl k+ +fg+     ++ ++++ + L+eyL++l ++ ++     +vl +FL
  KOO25243.1 470 RAKDGQAIFVIACQCDGQ--RWTVVRKERSVSELHAALQPLLHFLPDPPLEKRGWFGR----GTAGLATQAQRLQEYLTELTRDGQWALddRRVLARFL 562
                 357888999*******86..*************************************8....9*************************99889999999 PP

                 HS CS
          PX 111 ev 112
                 +v
  KOO25243.1 563 DV 564
                 76 PP

>> APH  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.3   0.0     0.058   2.6e+02     166     176 ..      42      52 ..      17      54 .. 0.90
   2 ?   10.6   0.0   8.4e-05      0.38     163     209 ..     131     172 ..     110     205 .. 0.78
   3 ?   -1.1   0.1      0.33   1.5e+03     116     150 ..     245     277 ..     196     292 .. 0.66
   4 ?   -2.5   0.5      0.89     4e+03     110     143 ..     515     547 ..     453     566 .. 0.41

  Alignments for each domain:
  == domain 1  score: 1.3 bits;  conditional E-value: 0.058
                 EEEE-SS-SGG CS
         APH 166 tvllHgDlhpg 176
                 +vl+HgDlh +
  KOO25243.1  42 KVLVHGDLHED 52 
                 69*******86 PP

  == domain 2  score: 10.6 bits;  conditional E-value: 8.4e-05
                 SS-EEEE-SS-SGGGEEEC..TTEEEEE---TT-EEEECCHHHHCCH CS
         APH 163 elptvllHgDlhpgNllvdpddgrvtGviDfedaglgpplyDlavll 209
                 + ++ llH Dl++ N+l+d  ++r   v Df+++   ++l D a+++
  KOO25243.1 131 SMEQPLLHLDLKSANVLLD--KNRTAKVCDFGMS---HVLEDAASAA 172
                 566779*************..56655699*9976...4457777776 PP

  == domain 3  score: -1.1 bits;  conditional E-value: 0.33
                 -SHHCHTCCHHHHHHCHHHCCCGCCTCCHHHHHHH CS
         APH 116 adflaqdlellrqlesatarllaselldlleelee 150
                 +    ++++ l+ l++++ r  +se +d   e+ +
  KOO25243.1 245 EQAQ-RWPRRLPNLMAQCMREEPSERPD-FNEVLD 277
                 3333.33677888888888888888888.333333 PP

  == domain 4  score: -2.5 bits;  conditional E-value: 0.89
                 -STTTB-SHHCHTCCHHHHHHCHHHCCCGCCTCC CS
         APH 110 paalpladflaqdlellrqlesatarllaselld 143
                 p+  +  +f++ ++ l+ q  +  + +l ++++d
  KOO25243.1 515 PPLEKRGWFGRGTAGLATQAQRL-QEYLTELTRD 547
                 33333333333222222222222.2344444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (567 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       444  (0.0247643); expected 358.6 (0.02)
Passed bias filter:                      287  (0.0160076); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.55u 0.28s 00:00:00.83 Elapsed: 00:00:00.68
# Mc/sec: 2525.37
//
Query:       KOO25244.1  [L=950]
Description: RNA-dependent RNA polymerase family protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.1e-65  221.0   0.0    4.4e-65  220.4   0.0    1.1  1  RdRP      RNA dependent RNA polymerase


Domain annotation for each model (and alignments):
>> RdRP  RNA dependent RNA polymerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  220.4   0.0   2.5e-69   4.4e-65      21     564 ..     155     796 ..     140     812 .. 0.72

  Alignments for each domain:
  == domain 1  score: 220.4 bits;  conditional E-value: 2.5e-69
        RdRP  21 RrfkegsdrFlrvkfpd.......edgerldsedgeellkerv..kkvlkegivi..agrkfeflafsdsqlrehsvwff....apf.eeegerisaee 103
                 Rr      + lrv+f+        ed+er+      e ++++v    + ++gi+   ++r +  ++ +d ++ e + wf+    + + e +++ + +++
  KOO25244.1 155 RRL---GCHLLRVRFERlasnalhEDKERW------EQMRQQVisVGTDQSGIRSvaGDRLYLHFCHKDAEKPEAQLWFVsvpaT-HrELKKQAVWVHQ 243
                 444...468999999995544444333333......33444443334444444333489*********************65531.1433333477888 PP

        RdRP 104 irkwlgdf......enisqsvaKyaaRlglalSttrptvvkvereqiiieeidD.v.kneekdiyl................................. 161
                 + + l+d       + +s s++K+ aRl la+St ++       e+ +  +++D   +++                                       
  KOO25244.1 244 MQQLLLDTlgttdgRTSSLSISKLNARLCLAFSTAVTVPGCAPTEEAV-LDLRDdSgRSQ-----Wqdlaalepmpagkvklvimndirviaadgsqgp 336
                 8777777777776545567***************99843332333323.23333233333.....1333457888899999999*************** PP

        RdRP 162 .ftDGvGliSrelarkiakklglkk....aeelPsafQiRi....gGaKGvlavdkrlkp.ekielrpSqiKfkseed.......dse........... 232
                  +tDG GliSr+la++    l  +     a   P ++Q+R+      +KG+l+ d++l p   + +r+S++K+ ++         d +           
  KOO25244.1 337 vMTDGAGLISRNLAEQMPLCLSGRLvtrkALGAPLLAQVRVwhrgYVVKGMLMTDSTL-PdGYVVVRESMVKVFARPGgeatldaD-Kvpkrlprgdky 433
                 *****************9444443355556667********9977778*******999.645699*******98876677777650.055556666666 PP

        RdRP 233 ..krtleivkvsskpkpayLnrqlikiLedlgvpeev.........flellkealeelrealkda...gaaaellkkagdpskleellaelldsgfdps 317
                   +  +e++++s+ + + ++n ql+++Le+ + p+           +l+l +e+ +++ ++ +++    + ++ll ++      +++++ +l +gf+p+
  KOO25244.1 434 weRSAFEVLRTSNGAPSGKMNPQLVPLLEHASGPRGSegrttmvglLLSLAEENKRRVCQIDSEElsgPQLRSLLLDF--GLGETSVASYMLLAGFHPR 530
                 66889****************************988888889889877777777777766666653334445555333..4455788889999****** PP

        RdRP 318 eldpflrsllkalvkeslrklkekarIpvpksatllgvaDetgvLkegevfvqlsealdqedeksktkllkgdvlVtRnPalhpgDiqvvkavdvp... 413
                 ++ p+lr+++ a++k +l++   + ++++p s +l gv+D+t +   g+v      + ++ +     k   +++l++R+P+ hpgD+++ + v +p   
  KOO25244.1 531 KE-PYLRRKIAAVQKAQLEQ-IASGKFKLPGSLYLTGVPDPTSTVPVGKVV-----V-IEGG-----KFCVEQLLIYRSPGTHPGDVRRTQSVMPPqpl 616
                 77.*************9988.5699**************************.....3.3322.....2233579*******************665777 PP

        RdRP 414 ......elrhlkdviVFstkGdrslaselsGGDlDGDkywViwdpe.le.f....apakpsn..eepadyee.................akpkeldrev 481
                         ++l++ i+Fs +G+r la++lsGGD+DGD+++V+   + +       ap    +  + +++  +                 +++++ d+++
  KOO25244.1 617 laclehVAAELQNAIIFSVQGERALADMLSGGDYDGDEFVVMRASDkIDtGvagmAPL---SlvD-AFQ--NesppwvqppkegggrgpPSQVTDDHQQ 709
                 7765544449*********************************666454213222332...1211.222..1235666667777776531334444667 PP

        RdRP 482 tvediadffvey.mksdvlGlisnahlaiadqeegiddpkclkLaelhskaVDypKtGipvdk.keiprelkkpke...kPdfkekek 564
                 t +++a  +++   +   +G+++n+ +++ +   g+++  + +L +l+ +a+D++K+G+     + i +el+k ++    P f+  + 
  KOO25244.1 710 TCTELARHYFDCdAAGGLIGQAANSIQMAQEY-WGCSSWITCQLIDLYNTALDAAKQGMRKAFsEAIREELNKMEQtvgLPCFMVVKA 796
                 77777655555523778899999999987775.**************************98843444444443333457999997665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (950 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       497  (0.0277205); expected 358.6 (0.02)
Passed bias filter:                      416  (0.0232026); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.70u 0.30s 00:00:01.00 Elapsed: 00:00:00.46
# Mc/sec: 6262.23
//
Query:       KOO25245.1  [L=1816]
Description: ankyrin repeat protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.9e-23   82.1   2.7    6.8e-08   32.9   0.1    3.5  3  EF-hand_7     EF-hand domain pair
    2.1e-18   64.6   1.1    0.00042   20.0   0.0    6.2  6  EF-hand_6     EF-hand domain
    7.6e-18   62.7   5.8    0.00023   20.5   0.0    6.0  6  EF-hand_1     EF hand
    4.4e-17   62.4   0.2      7e-10   39.4   0.0    2.7  2  Ank_2         Ankyrin repeats (3 copies)
    3.9e-12   45.1   3.6      0.032   13.7   0.0    5.6  5  EF-hand_5     EF hand
    2.7e-11   43.1   3.8      0.015   15.1   0.0    5.7  6  EF-hand_8     EF-hand domain pair
    1.8e-08   34.8   0.3    1.2e-06   28.9   0.2    3.0  2  Ank_4         Ankyrin repeats (many copies)
    3.5e-07   30.5   0.4        1.2    9.5   0.0    4.1  3  SPARC_Ca_bdg  Secreted protein acidic and rich in cysteine Ca
    4.8e-07   29.6   0.3      0.086   13.4   0.0    3.8  3  Ank_3         Ankyrin repeat
    8.3e-06   26.0   0.2      0.087   13.2   0.0    3.3  2  Ank_5         Ankyrin repeats (many copies)
     0.0035   17.7   0.1         20    5.6   0.0    3.5  3  EF-hand_9     EF-hand domain
     0.0049   17.3   0.1        2.4    8.7   0.0    3.5  3  Ank           Ankyrin repeat
  ------ inclusion threshold ------
       0.01   15.7   3.5        7.1    6.6   0.0    4.6  5  EF-hand_10    EF hand
        4.8    6.8  10.9          4    7.1   0.5    3.4  3  DUF2368       Uncharacterised conserved protein (DUF2368)


Domain annotation for each model (and alignments):
>> EF-hand_7  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.9   0.1   5.3e-11   6.8e-08       6      71 .]     109     173 ..     104     173 .. 0.92
   2 !   17.9   0.0   2.4e-06    0.0031       4      70 ..     438     504 ..     435     505 .. 0.81
   3 !   29.7   0.1   5.1e-10   6.5e-07      11      71 .]     592     651 ..     583     651 .. 0.91

  Alignments for each domain:
  == domain 1  score: 32.9 bits;  conditional E-value: 5.3e-11
   EF-hand_7   6 eaFkelDtdgdgyldkee.llrllrkifqgagegsklsdeelellfkefDtdkdGvisfdEFlklyr 71 
                 + F+  D+d++g ldk+e l  +++++ +++g + +  +e++ +lf   D+++dGvi   EF++++r
  KOO25245.1 109 TEFRRQDVDNNGVLDKSEaLT-VVERMCTKFGLTLP-KKEKISELFSLCDKNGDGVIQIAEFRNYFR 173
                 569999************777.99999999999999.889***********************9986 PP

  == domain 2  score: 17.9 bits;  conditional E-value: 2.4e-06
   EF-hand_7   4 lkea.FkelDtdgdgyldkee.llrllrkifqgagegsklsdeelellfkefDtdkdGvisfdEFlkly 70 
                 l+ a F + D+ ++g ld++e l++ +++  + ++   + s ++  ++ +  Dt++dG+i  +EF+ ++
  KOO25245.1 438 LCNAeFSAADRFQNGALDRAEaLEC-VKRTCERFEVRLP-SADKCGEFYDACDTSRDGSIQPNEFYVFF 504
                 66677****************7875.5555555566666.667899*******************9876 PP

  == domain 3  score: 29.7 bits;  conditional E-value: 5.1e-10
   EF-hand_7  11 lDtdgdgyldkee.llrllrkifqgagegsklsdeelellfkefDtdkdGvisfdEFlklyr 71 
                  D+d++g ldk+e l  +++++ +++g + +  +e++ +lf   D+++dGvi   EF++++r
  KOO25245.1 592 QDVDNNGVLDKSEaLT-VVERMCTKFGLTLP-KKEKISELFSLCDKNGDGVIQIAEFRNYFR 651
                 59***********777.99999999999999.889***********************9986 PP

>> EF-hand_6  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.4   0.0     0.034        43       6      22 ..     111     127 ..     110     137 .. 0.85
   2 !   20.0   0.0   3.3e-07   0.00042       2      27 ..     148     173 ..     147     180 .. 0.91
   3 ?   -1.1   0.0       1.9   2.4e+03       6      25 ..     443     462 ..     440     466 .. 0.84
   4 !    8.7   0.0    0.0014       1.8       4      23 ..     482     501 ..     479     508 .. 0.88
   5 ?    3.5   0.0     0.066        84      10      22 ..     593     605 ..     589     614 .. 0.84
   6 !   19.5   0.0   4.9e-07   0.00062       2      27 ..     626     651 ..     625     655 .. 0.92

  Alignments for each domain:
  == domain 1  score: 4.4 bits;  conditional E-value: 0.034
   EF-hand_6   6 FklfDkdgdGkidaeEl 22 
                 F+  D+d++G +d++E 
  KOO25245.1 111 FRRQDVDNNGVLDKSEA 127
                 6667**********995 PP

  == domain 2  score: 20.0 bits;  conditional E-value: 3.3e-07
   EF-hand_6   2 lreaFklfDkdgdGkidaeElrkalr 27 
                 + e+F l Dk+gdG i ++E+r+ +r
  KOO25245.1 148 ISELFSLCDKNGDGVIQIAEFRNYFR 173
                 5689*******************998 PP

  == domain 3  score: -1.1 bits;  conditional E-value: 1.9
   EF-hand_6   6 FklfDkdgdGkidaeElrka 25 
                 F + D+  +G +d++E   +
  KOO25245.1 443 FSAADRFQNGALDRAEALEC 462
                 8899999*******996665 PP

  == domain 4  score: 8.7 bits;  conditional E-value: 0.0014
   EF-hand_6   4 eaFklfDkdgdGkidaeElr 23 
                 e++++ D+++dG+i ++E+ 
  KOO25245.1 482 EFYDACDTSRDGSIQPNEFY 501
                 7899**************96 PP

  == domain 5  score: 3.5 bits;  conditional E-value: 0.066
   EF-hand_6  10 DkdgdGkidaeEl 22 
                 D+d++G +d++E 
  KOO25245.1 593 DVDNNGVLDKSEA 605
                 9*********995 PP

  == domain 6  score: 19.5 bits;  conditional E-value: 4.9e-07
   EF-hand_6   2 lreaFklfDkdgdGkidaeElrkalr 27 
                 + e+F l Dk+gdG i ++E+r+ +r
  KOO25245.1 626 ISELFSLCDKNGDGVIQIAEFRNYFR 651
                 5689******************9988 PP

>> EF-hand_1  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.3   0.1    0.0014       1.7       6      28 ..     111     133 ..     108     134 .. 0.86
   2 !   20.5   0.0   1.8e-07   0.00023       2      27 ..     148     173 ..     147     175 .. 0.92
   3 ?   -2.0   0.0       2.8   3.6e+03       6      28 ..     443     465 ..     440     466 .. 0.81
   4 ?    5.2   0.0     0.014        18       4      26 ..     482     504 ..     479     507 .. 0.83
   5 !    5.9   0.0    0.0082        11      10      28 ..     593     611 ..     588     612 .. 0.84
   6 !   20.4   0.1   1.9e-07   0.00024       2      27 ..     626     651 ..     625     653 .. 0.92

  Alignments for each domain:
  == domain 1  score: 8.3 bits;  conditional E-value: 0.0014
                 HHHHTTTSSSEEEHHHHHHHHHH CS
   EF-hand_1   6 FrefDkDgdGkIdfeEfkellkk 28 
                 Fr  D+D++G +d++E ++++++
  KOO25245.1 111 FRRQDVDNNGVLDKSEALTVVER 133
                 8999************8887765 PP

  == domain 2  score: 20.5 bits;  conditional E-value: 1.8e-07
                 HHHHHHHHTTTSSSEEEHHHHHHHHH CS
   EF-hand_1   2 lkeiFrefDkDgdGkIdfeEfkellk 27 
                 + e+F++ Dk+gdG I + Ef+++++
  KOO25245.1 148 ISELFSLCDKNGDGVIQIAEFRNYFR 173
                 789*******************9986 PP

  == domain 3  score: -2.0 bits;  conditional E-value: 2.8
                 HHHHTTTSSSEEEHHHHHHHHHH CS
   EF-hand_1   6 FrefDkDgdGkIdfeEfkellkk 28 
                 F+ +D+ ++G +d+ E +e++k+
  KOO25245.1 443 FSAADRFQNGALDRAEALECVKR 465
                 556666689*******9999987 PP

  == domain 4  score: 5.2 bits;  conditional E-value: 0.014
                 HHHHHHTTTSSSEEEHHHHHHHH CS
   EF-hand_1   4 eiFrefDkDgdGkIdfeEfkell 26 
                 e+ +  D+ +dG I  +Ef  ++
  KOO25245.1 482 EFYDACDTSRDGSIQPNEFYVFF 504
                 667789*************8877 PP

  == domain 5  score: 5.9 bits;  conditional E-value: 0.0082
                 TTTSSSEEEHHHHHHHHHH CS
   EF-hand_1  10 DkDgdGkIdfeEfkellkk 28 
                 D+D++G +d++E ++++++
  KOO25245.1 593 DVDNNGVLDKSEALTVVER 611
                 9***********8887765 PP

  == domain 6  score: 20.4 bits;  conditional E-value: 1.9e-07
                 HHHHHHHHTTTSSSEEEHHHHHHHHH CS
   EF-hand_1   2 lkeiFrefDkDgdGkIdfeEfkellk 27 
                 + e+F++ Dk+gdG I + Ef+++++
  KOO25245.1 626 ISELFSLCDKNGDGVIQIAEFRNYFR 651
                 789*******************9986 PP

>> Ank_2  Ankyrin repeats (3 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.1   0.0     2e-10   2.6e-07      25      79 ..    1697    1757 ..    1675    1761 .. 0.79
   2 !   39.4   0.0   5.5e-13     7e-10       1      78 [.    1702    1793 ..    1702    1798 .. 0.83

  Alignments for each domain:
  == domain 1  score: 31.1 bits;  conditional E-value: 2e-10
       Ank_2   25 ngktaLhyAakngnleivklLleh......ad.ndgrtpLhyAarsghleivklLlekgadi 79  
                  ++  aL +Aa++g+l +v+ L +        d +d r++Lh+A+++g l+iv++Lle g d+
  KOO25245.1 1697 QHDYALLHAAQEGHLATVRVLTNRgarvcvRDgKDQRNALHIACFEGFLDIVRVLLEVG-DV 1757
                  45799*****************9676777444999*********************876.55 PP

  == domain 2  score: 39.4 bits;  conditional E-value: 5.5e-13
       Ank_2    1 LhlAakngnlelvklLl.egadpn..k..ngktaLhyAakngnleivklLleh.........adndgrtpLhyAarsghleivklLlekgad 78  
                  L +Aa++g+l +v+ L   ga++   +  + ++aLh+A+ +g l+iv+ Lle           d  g+t+ ++A+  g+l i+++L e gad
  KOO25245.1 1702 LLHAAQEGHLATVRVLTnRGARVCvrDgkDQRNALHIACFEGFLDIVRVLLEVgdvddfleaRDLGGNTAYMLACMRGYLTIMRVLKEAGAD 1793
                  5689****9********88877766534599********************944544555544477********************999998 PP

>> EF-hand_5  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.0   0.1     0.015        19       5      24 ..     111     130 ..     108     131 .. 0.85
   2 !   13.7   0.0   2.5e-05     0.032       4      23 ..     151     170 ..     148     172 .. 0.87
   3 ?    5.4   0.0     0.011        14       9      24 ..     488     503 ..     485     505 .. 0.88
   4 ?    3.2   0.0     0.054        69       9      24 ..     593     608 ..     588     609 .. 0.86
   5 !   13.7   0.0   2.5e-05     0.032       4      23 ..     629     648 ..     626     650 .. 0.87

  Alignments for each domain:
  == domain 1  score: 5.0 bits;  conditional E-value: 0.015
                 HHHH-SS-SSCE-HHHHHHH CS
   EF-hand_5   5 FqaiDlNgDGkIskeELktl 24 
                 F++ D+++ G ++k+E  t+
  KOO25245.1 111 FRRQDVDNNGVLDKSEALTV 130
                 7888************7665 PP

  == domain 2  score: 13.7 bits;  conditional E-value: 2.5e-05
                 HHHHH-SS-SSCE-HHHHHH CS
   EF-hand_5   4 tFqaiDlNgDGkIskeELkt 23 
                 +F+  D+NgDG I + E+++
  KOO25245.1 151 LFSLCDKNGDGVIQIAEFRN 170
                 68888*************96 PP

  == domain 3  score: 5.4 bits;  conditional E-value: 0.011
                 -SS-SSCE-HHHHHHH CS
   EF-hand_5   9 DlNgDGkIskeELktl 24 
                 D+ +DG I + E++ +
  KOO25245.1 488 DTSRDGSIQPNEFYVF 503
                 999**********974 PP

  == domain 4  score: 3.2 bits;  conditional E-value: 0.054
                 -SS-SSCE-HHHHHHH CS
   EF-hand_5   9 DlNgDGkIskeELktl 24 
                 D+++ G ++k+E  t+
  KOO25245.1 593 DVDNNGVLDKSEALTV 608
                 9***********7665 PP

  == domain 5  score: 13.7 bits;  conditional E-value: 2.5e-05
                 HHHHH-SS-SSCE-HHHHHH CS
   EF-hand_5   4 tFqaiDlNgDGkIskeELkt 23 
                 +F+  D+NgDG I + E+++
  KOO25245.1 629 LFSLCDKNGDGVIQIAEFRN 648
                 68888*************96 PP

>> EF-hand_8  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.9   0.0      0.16     2e+02      29      53 ..     108     132 ..     105     134 .. 0.83
   2 !   15.1   0.0   1.2e-05     0.015      15      52 ..     136     172 ..     131     174 .. 0.85
   3 ?    1.1   0.0      0.28   3.6e+02      28      54 ..     439     465 ..     438     466 .. 0.90
   4 ?    5.3   0.0     0.014        18      34      53 ..     486     505 ..     475     507 .. 0.87
   5 ?   -1.5   0.0       1.9   2.4e+03      36      52 ..     593     609 ..     584     611 .. 0.78
   6 !   15.0   0.0   1.3e-05     0.016      15      52 ..     614     650 ..     610     652 .. 0.85

  Alignments for each domain:
  == domain 1  score: 1.9 bits;  conditional E-value: 0.16
   EF-hand_8  29 dilfrefDtdgdGkisfeEFcvlle 53 
                 d+ fr+ D d++G++++ E + ++e
  KOO25245.1 108 DTEFRRQDVDNNGVLDKSEALTVVE 132
                 7789999*********999766665 PP

  == domain 2  score: 15.1 bits;  conditional E-value: 1.2e-05
   EF-hand_8  15 rilglkkglseee.vdilfrefDtdgdGkisfeEFcvll 52 
                 +++gl   l ++e + +lf++ D +gdG+i   EF +++
  KOO25245.1 136 TKFGLT--LPKKEkISELFSLCDKNGDGVIQIAEFRNYF 172
                 677888..777777**********************998 PP

  == domain 3  score: 1.1 bits;  conditional E-value: 0.28
   EF-hand_8  28 vdilfrefDtdgdGkisfeEFcvller 54 
                 + + f+++D+ ++G+++  E +++++r
  KOO25245.1 439 CNAEFSAADRFQNGALDRAEALECVKR 465
                 6788****************9999887 PP

  == domain 4  score: 5.3 bits;  conditional E-value: 0.014
   EF-hand_8  34 efDtdgdGkisfeEFcvlle 53 
                 + Dt +dG i  +EF+v+++
  KOO25245.1 486 ACDTSRDGSIQPNEFYVFFV 505
                 67***************997 PP

  == domain 5  score: -1.5 bits;  conditional E-value: 1.9
   EF-hand_8  36 DtdgdGkisfeEFcvll 52 
                 D d++G++++ E + ++
  KOO25245.1 593 DVDNNGVLDKSEALTVV 609
                 88*******99966665 PP

  == domain 6  score: 15.0 bits;  conditional E-value: 1.3e-05
   EF-hand_8  15 rilglkkglseee.vdilfrefDtdgdGkisfeEFcvll 52 
                 +++gl   l ++e + +lf++ D +gdG+i   EF +++
  KOO25245.1 614 TKFGLT--LPKKEkISELFSLCDKNGDGVIQIAEFRNYF 650
                 667777..776666**********************998 PP

>> Ank_4  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.9   0.2   9.3e-10   1.2e-06       4      55 .]    1701    1752 ..    1700    1752 .. 0.96
   2 ?    2.3   0.0       0.2   2.6e+02      30      54 ..    1764    1787 ..    1757    1793 .. 0.81

  Alignments for each domain:
  == domain 1  score: 28.9 bits;  conditional E-value: 9.3e-10
       Ank_4    4 aLhyaaisgrlelvrlLlekgadinaqdnrsGetalhiAakrgnveilklLl 55  
                  aL +aa++g+l +vr L ++ga ++ +d +++++alhiA+  g+++i++ Ll
  KOO25245.1 1701 ALLHAAQEGHLATVRVLTNRGARVCVRDGKDQRNALHIACFEGFLDIVRVLL 1752
                  5889***********************8899*******************97 PP

  == domain 2  score: 2.3 bits;  conditional E-value: 0.2
       Ank_4   30 qdnrsGetalhiAakrgnveilklL 54  
                  + +  G+ta   A++rg++ i + L
  KOO25245.1 1764 R-DLGGNTAYMLACMRGYLTIMRVL 1787
                  6.77899999999999998776655 PP

>> SPARC_Ca_bdg  Secreted protein acidic and rich in cysteine Ca binding region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.4   0.0   0.00098       1.3      57     110 ..     108     168 ..      83     170 .. 0.77
   2 !    6.6   0.1    0.0071       9.1      63     110 ..     454     500 ..     433     502 .. 0.72
   3 !    9.5   0.0   0.00093       1.2      55     110 ..     584     646 ..     564     648 .. 0.76

  Alignments for each domain:
  == domain 1  score: 9.4 bits;  conditional E-value: 0.00098
  SPARC_Ca_bdg  57 awkFsklDtnsdkvlsksELaplrapl.......vklehCikpflescDadkdkkislkEw 110
                     +F + D+++++vl+ksE   + + +        +  + i+++++ cD + d+ i+ +E+
    KOO25245.1 108 DTEFRRQDVDNNGVLDKSEALTVVERMctkfgltLPKKEKISELFSLCDKNGDGVIQIAEF 168
                   5689999***********965555443112122235567799******************9 PP

  == domain 2  score: 6.6 bits;  conditional E-value: 0.0071
  SPARC_Ca_bdg  63 lDtnsdkvlsksELaplraplvklehCikpflescDadkdkkislkEw 110
                   lD  +     k+  +  +  l + ++C  +f ++cD+ +d++i+ +E+
    KOO25245.1 454 LDRAEALECVKRTCERFEVRLPSADKCG-EFYDACDTSRDGSIQPNEF 500
                   4444444444444555566677888895.7*****************9 PP

  == domain 3  score: 9.5 bits;  conditional E-value: 0.00093
  SPARC_Ca_bdg  55 pvawkFsklDtnsdkvlsksELaplrapl.......vklehCikpflescDadkdkkislkEw 110
                       +F + D+++++vl+ksE   + + +        +  + i+++++ cD + d+ i+ +E+
    KOO25245.1 584 VSDTEFGRQDVDNNGVLDKSEALTVVERMctkfgltLPKKEKISELFSLCDKNGDGVIQIAEF 646
                   55668999************965555443112122235567799******************9 PP

>> Ank_3  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.5   0.0       0.5   6.5e+02       4      27 ..    1700    1722 ..    1698    1725 .. 0.88
   2 !   13.4   0.0   6.7e-05     0.086       2      27 ..    1732    1757 ..    1731    1758 .. 0.88
   3 !    9.9   0.0   0.00097       1.2       2      28 ..    1768    1793 ..    1767    1796 .. 0.92

  Alignments for each domain:
  == domain 1  score: 1.5 bits;  conditional E-value: 0.5
       Ank_3    4 tpLhlAarsgnleivkfLlenkga 27  
                  ++L +Aa  g+l+ v+ L + +ga
  KOO25245.1 1700 YALLHAAQEGHLATVRVLTN-RGA 1722
                  799*********99***999.787 PP

  == domain 2  score: 13.4 bits;  conditional E-value: 6.7e-05
       Ank_3    2 GetpLhlAarsgnleivkfLlenkga 27  
                  ++++Lh+A+  g l+iv+ Lle   +
  KOO25245.1 1732 QRNALHIACFEGFLDIVRVLLEVGDV 1757
                  799*******************6555 PP

  == domain 3  score: 9.9 bits;  conditional E-value: 0.00097
       Ank_3    2 GetpLhlAarsgnleivkfLlenkgad 28  
                  G+t+ +lA++ g l+i++ L e  gad
  KOO25245.1 1768 GNTAYMLACMRGYLTIMRVLKE-AGAD 1793
                  9*********************.8999 PP

>> Ank_5  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.2   0.0   6.8e-05     0.087       5      41 ..    1721    1758 ..    1716    1762 .. 0.74
   2 !    9.4   0.1    0.0011       1.4      11      46 ..    1763    1798 ..    1757    1803 .. 0.87

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 6.8e-05
       Ank_5    5 gpadvnrldgggn.tpLhvAakygaadvvrlLl.argad 41  
                  g a+v+ +dg+ + ++Lh+A+  g +d+vr+Ll    +d
  KOO25245.1 1721 G-ARVCVRDGKDQrNALHIACFEGFLDIVRVLLeVGDVD 1758
                  3.566666666666*******************555555 PP

  == domain 2  score: 9.4 bits;  conditional E-value: 0.0011
       Ank_5   11 rldgggntpLhvAakygaadvvrlLlargadlnltd 46  
                  ++d ggnt+ ++A+ +g+++++r+L + gad ++ +
  KOO25245.1 1763 ARDLGGNTAYMLACMRGYLTIMRVLKEAGADERAEE 1798
                  6899*********************99998877655 PP

>> EF-hand_9  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.1   0.0     0.022        29       3      27 ..     151     175 ..     149     190 .. 0.87
   2 ?    2.4   0.0      0.15   1.9e+02       4      35 ..     484     519 ..     482     526 .. 0.74
   3 ?    5.6   0.0     0.016        20       3      27 ..     629     653 ..     627     663 .. 0.92

  Alignments for each domain:
  == domain 1  score: 5.1 bits;  conditional E-value: 0.022
   EF-hand_9   3 vFevcDtqktGrVpvsrlidyLrav 27 
                 +F++cD +  G++++++  +y r v
  KOO25245.1 151 LFSLCDKNGDGVIQIAEFRNYFRVV 175
                 7*****************9999977 PP

  == domain 2  score: 2.4 bits;  conditional E-value: 0.15
   EF-hand_9   4 FevcDtqktGrVpvsr....lidyLravtaqdpees 35 
                 +++cDt + G ++  +     +++L+a+ +q+ +++
  KOO25245.1 484 YDACDTSRDGSIQPNEfyvfFVTLLEACVNQSENDH 519
                 99*********9877633224788888888776666 PP

  == domain 3  score: 5.6 bits;  conditional E-value: 0.016
   EF-hand_9   3 vFevcDtqktGrVpvsrlidyLrav 27 
                 +F++cD +  G++++++  +y r+v
  KOO25245.1 629 LFSLCDKNGDGVIQIAEFRNYFRIV 653
                 7********************9987 PP

>> Ank  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.0       3.5   4.4e+03       6      27 ..    1702    1724 ..    1699    1728 .. 0.67
   2 !    8.7   0.0    0.0019       2.4       4      27 ..    1734    1757 ..    1731    1765 .. 0.79
   3 ?    4.2   0.0     0.052        67       2      22 ..    1768    1788 ..    1767    1796 .. 0.76

  Alignments for each domain:
  == domain 1  score: -1.6 bits;  conditional E-value: 3.5
                  HHHHHHHTTHHHHHHHH.TTTST CS
         Ank    6 LHlAatngkkriiklLL.hGAnl 27  
                  L  Aa++g++  ++ L  +GA +
  KOO25245.1 1702 LLHAAQEGHLATVRVLTnRGARV 1724
                  44558899988888887557655 PP

  == domain 2  score: 8.7 bits;  conditional E-value: 0.0019
                  BHHHHHHHHTTHHHHHHHH.TTTST CS
         Ank    4 TPLHlAatngkkriiklLL.hGAnl 27  
                   +LH+A+ +g ++i++ LL  G ++
  KOO25245.1 1734 NALHIACFEGFLDIVRVLLeVG-DV 1757
                  69*****888899*****9447.65 PP

  == domain 3  score: 4.2 bits;  conditional E-value: 0.052
                  SBBHHHHHHHHTTHHHHHHHH CS
         Ank    2 GnTPLHlAatngkkriiklLL 22  
                  GnT+ +lA+++g + i + L 
  KOO25245.1 1768 GNTAYMLACMRGYLTIMRVLK 1788
                  9********999865555554 PP

>> EF-hand_10  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.0       3.6   4.6e+03      27      42 ..     111     126 ..     109     129 .. 0.92
   2 ?    2.9   0.0     0.078        99      25      48 ..     150     173 ..     148     175 .. 0.90
   3 ?   -2.1   0.0       2.8   3.5e+03      27      42 ..     443     458 ..     439     464 .. 0.88
   4 ?    6.6   0.0    0.0056       7.1      28      48 ..     485     505 ..     481     507 .. 0.86
   5 ?    3.1   0.0     0.068        87      25      48 ..     628     651 ..     626     653 .. 0.90

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 3.6
  EF-hand_10  27 FkkcDkSksgrLegeE 42 
                 F++ D  ++g L+ +E
  KOO25245.1 111 FRRQDVDNNGVLDKSE 126
                 9999*********999 PP

  == domain 2  score: 2.9 bits;  conditional E-value: 0.078
  EF-hand_10  25 kLFkkcDkSksgrLegeEieeFyk 48 
                 +LF  cDk  +g ++  E+ ++++
  KOO25245.1 150 ELFSLCDKNGDGVIQIAEFRNYFR 173
                 79**************99999887 PP

  == domain 3  score: -2.1 bits;  conditional E-value: 2.8
  EF-hand_10  27 FkkcDkSksgrLegeE 42 
                 F  +D+ ++g L+  E
  KOO25245.1 443 FSAADRFQNGALDRAE 458
                 8889*********988 PP

  == domain 4  score: 6.6 bits;  conditional E-value: 0.0056
  EF-hand_10  28 kkcDkSksgrLegeEieeFyk 48 
                   cD+S++g+++ +E+  F+ 
  KOO25245.1 485 DACDTSRDGSIQPNEFYVFFV 505
                 67***************9986 PP

  == domain 5  score: 3.1 bits;  conditional E-value: 0.068
  EF-hand_10  25 kLFkkcDkSksgrLegeEieeFyk 48 
                 +LF  cDk  +g ++  E+ ++++
  KOO25245.1 628 ELFSLCDKNGDGVIQIAEFRNYFR 651
                 79****************999887 PP

>> DUF2368  Uncharacterised conserved protein (DUF2368)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.1   0.5    0.0031         4      19      49 ..      56      86 ..      42      92 .. 0.83
   2 ?    5.5   0.1    0.0094        12      16      49 ..     531     564 ..     518     570 .. 0.83
   3 ?   -2.6   1.6         3   3.8e+03      18      60 ..     796     841 ..     792     867 .. 0.67

  Alignments for each domain:
  == domain 1  score: 7.1 bits;  conditional E-value: 0.0031
     DUF2368 19 fleemqklqlerqlamqnlmrerqmAlqiak 49
                 +  ++k+++ r l++q+++ erqmAl++a+
  KOO25245.1 56 KIGALAKVRQIRALKAQQQADERQMALELAH 86
                566678888999*****************97 PP

  == domain 2  score: 5.5 bits;  conditional E-value: 0.0094
     DUF2368  16 nqefleemqklqlerqlamqnlmrerqmAlqiak 49 
                 + e + ++++++  + l++++++ erqmAl++a+
  KOO25245.1 531 DLEHILSQKDVEPSSALKAKQQADERQMALELAH 564
                 567788889999999*****************97 PP

  == domain 3  score: -2.6 bits;  conditional E-value: 3
     DUF2368  18 efleemqklqlerqlamqnlm...rerqmAlqiakarellkwlasf 60 
                 e+++  ++ q+ r   ++ ++   ++ +mAl +a ar    wla+ 
  KOO25245.1 796 EMMRGWNRWQIRRDDTFRLRAwleQALRMALAVAAARGWRGWLAML 841
                 56666666666665444443300045579**********9999975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1816 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       584  (0.0325729); expected 358.6 (0.02)
Passed bias filter:                      303  (0.0169); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                        16  (0.000892409); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              14  [number of targets reported over threshold]
# CPU time: 0.96u 0.28s 00:00:01.24 Elapsed: 00:00:00.45
# Mc/sec: 12068.01
//
Query:       KOO25246.1  [L=194]
Description: origin recognition complex subunit 2-like protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.2e-32  112.3   0.0    2.8e-32  112.0   0.0    1.1  1  ORC2      Origin recognition complex subunit 2


Domain annotation for each model (and alignments):
>> ORC2  Origin recognition complex subunit 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  112.0   0.0   1.5e-36   2.8e-32     165     327 ..      30     179 ..      12     183 .. 0.91

  Alignments for each domain:
  == domain 1  score: 112.0 bits;  conditional E-value: 1.5e-36
                 TTT-SSSEEEEE--STTHHHH--HHHHTTS-EEE---------GGGGGG--.-TT---.--.----HH..HHHHHHHHS-HHHHHHHHHHHHHHHT--- CS
        ORC2 165 LaaipqIhliasiDhinapllwdssklsqfnfvfhdvtTfapysaElsfedevlellgrskrrvggke..gakfVLkSLtenarklfklLveeqLekke 261
                 +a+  ++h+ias+ h +a+ lwds k++ fn+ + +++T  +y++E   +d+++ellg+   +++g e  +a++VL +Lt+nark+f lL++ qLe   
  KOO25246.1  30 VATPANVHVIASCSHRYAASLWDSRKARAFNWAWVEAPTGLSYAHEA--VDSIHELLGSLFDSAVGTEgrSAQIVLDALTSNARKVFTLLLTFQLE--- 123
                 567789****************************************8..999******65556666551168************************... PP

                 -----------------BHHHHHHHHHHS--SSSGGGHHHHHHHHTTTTSS-B--------BB--S CS
        ORC2 262 seekkekskkgseeagveykelynkareefivssemalrtlLkEFkDHklikskkdasgtevlsip 327
                           + ++ g++++ely++ r+   +s+e+al++++ EF DH+l++++ +++g+++ +  
  KOO25246.1 124 ----------HPKAPGLSFEELYKRSRAVYATSNEVALKKHIAEFLDHHLVRTRSGTGGQQCYWCS 179
                 ..........89*************************************************99965 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (194 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       742  (0.0413855); expected 358.6 (0.02)
Passed bias filter:                      617  (0.0344135); expected 358.6 (0.02)
Passed Vit filter:                        65  (0.00362541); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.28s 00:00:00.69 Elapsed: 00:00:00.41
# Mc/sec: 1420.51
//
Query:       KOO25247.1  [L=433]
Description: hypothetical protein Ctob_000563, partial [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
  ------ inclusion threshold ------
      0.014   15.6   0.8      0.014   15.6   0.8    1.8  2  Cortex-I_coil    Cortexillin I, coiled coil
      0.022   14.1   2.4      0.044   13.1   2.4    1.4  1  DUF3450          Protein of unknown function (DUF3450)
      0.028   13.9   0.5       0.06   12.8   0.5    1.5  1  DUF4349          Domain of unknown function (DUF4349)
      0.069   13.3   0.7       0.51   10.5   0.1    2.2  2  Cob_adeno_trans  Cobalamin adenosyltransferase
       0.12   11.5   0.0       0.17   11.0   0.0    1.1  1  Sre              C. elegans Sre G protein-coupled chemorecept
       0.13   12.4   0.2       0.22   11.7   0.2    1.3  1  DUF3461          Protein of unknown function (DUF3461)
       0.17   12.0   0.4       0.29   11.2   0.4    1.3  1  DUF1664          Protein of unknown function (DUF1664)
       0.75    9.8   5.4        2.5    8.0   3.5    1.9  2  MIP-T3_C         Microtubule-binding protein MIP-T3 C-termina
          2    8.7   5.7        2.1    8.6   0.3    3.2  3  DnaB_bind        DnaB-helicase binding domain of primase


Domain annotation for each model (and alignments):
>> Cortex-I_coil  Cortexillin I, coiled coil
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.6   0.8   7.2e-06     0.014      31      76 ..      61     107 ..      38     112 .. 0.81
   2 ?   -3.4   0.1       5.6   1.1e+04       6      19 ..     403     416 ..     397     422 .. 0.53

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 7.2e-06
                    HHHHHHHHH.HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
  Cortex-I_coil  31 sreelikqk.delesllasleseaaerekrlreleakldealknlel 76 
                    sr++  ++k + l++ll+ l++ ++   + lr++e  l+ealk+l+l
     KOO25247.1  61 SRNQPQQKKvEVLQELLRELRKTEDPASQTLRDIEYDLEEALKELHL 107
                    5555554441569******************************9976 PP

  == domain 2  score: -3.4 bits;  conditional E-value: 5.6
                    XXXXXXXXHHHHHH CS
  Cortex-I_coil   6 rleasknelankla 19 
                    rle  ++e+ n l 
     KOO25247.1 403 RLELEREEFVNELR 416
                    44444444444444 PP

>> DUF3450  Protein of unknown function (DUF3450)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   2.4   2.2e-05     0.044       9     110 ..       6     106 ..       2     115 .. 0.80

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 2.2e-05
     DUF3450   9 lasgalaatldqalkeaekavaaaaq..sqkkidklddekqellaeyralkeeleslevyneqlerlvasqeqeiasleeqieeieeierelvpllekm 105
                 la++a+a+ +++al +a+   + +aq  +q+   ++d+ +++l ++++++k+    l+  n+ +++ v+ +++ + +l++  + ++++ r+++  le+ 
  KOO25247.1   6 LAAAAAASRAEDALRAASDLLTPRAQdpMQSALHAWDKAATQLHERMTRAKRD---LDSRNQPQQKKVEVLQELLRELRKTEDPASQTLRDIEYDLEEA 101
                 33444477788888888877765555448***************999888765...5668899999999999999999999999999999999999999 PP

     DUF3450 106 idrLe 110
                 +++L+
  KOO25247.1 102 LKELH 106
                 98886 PP

>> DUF4349  Domain of unknown function (DUF4349)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.5     3e-05      0.06      85     138 ..      53     104 ..      28     122 .. 0.90

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 3e-05
     DUF4349  85 TeqyvDleaRlkaleasedrllallekaksvedlleiereLsevqaeieslegq 138
                 T    Dl++R + ++++++ l++ll++  ++ed   +++ L ++++++e++ ++
  KOO25247.1  53 TRAKRDLDSRNQPQQKKVEVLQELLRELRKTEDP--ASQTLRDIEYDLEEALKE 104
                 67778****************************5..78***********98766 PP

>> Cob_adeno_trans  Cobalamin adenosyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.6   0.1      0.27   5.4e+02      85      99 ..      67      81 ..       8     121 .. 0.49
   2 ?   10.5   0.1   0.00025      0.51      50     126 ..     330     403 ..     316     421 .. 0.86

  Alignments for each domain:
  == domain 1  score: 0.6 bits;  conditional E-value: 0.27
                     HHHHHHHHHHHHHHH CS
  Cob_adeno_trans 85 eeeveelekeidele 99
                     +++ve l++ + el+
       KOO25247.1 67 QKKVEVLQELLRELR 81
                     222222222222222 PP

  == domain 2  score: 10.5 bits;  conditional E-value: 0.00025
                      THHHHHHHHHHHHHHHHHHHHHHT.-BTCCG-S--HHHHHHHHHHHHHHHHHS--EESEEES-SSHHHHHHHHHHHH CS
  Cob_adeno_trans  50 eeelkeaLeeiqneLfdlgaelatpekkkekkkiteeeveelekeideleaelpplksfilpggspaaaalhvaRtv 126
                       +++++aL+   +eL+++ a+l t +   +k+++te+ +++l  +  + ++  pp+   +lpg s++++ l++aRt 
       KOO25247.1 330 VAKAAQALRLHSHELLTALAALRTLQPPPDKERLTERPIQRLTGWSGREREAAPPV---FLPGPSHTVSLLELARTR 403
                      4567889999999*********99888899999**999*********999999975...8***************95 PP

>> Sre  C. elegans Sre G protein-coupled chemoreceptor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   8.4e-05      0.17     116     153 ..     101     138 ..      89     141 .. 0.87

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 8.4e-05
         Sre 116 slnglelliiggflkihymfsvvfgllaiavERiiAsv 153
                  l++l l +++g l+ +    v+ gl+ ++vER++As+
  KOO25247.1 101 ALKELHLPYRAGWLFRVSYSGVMLGLMDFSVERCCASL 138
                 566777888999999999999***************97 PP

>> DUF3461  Protein of unknown function (DUF3461)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.2   0.00011      0.22      69     124 ..      45     100 ..      26     101 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.00011
     DUF3461  69 vseisavlrkvleeLdkltekkkeekdikekllkdlkhlekvvnskikeierklek 124
                  ++  + ++++  +Ld+  + +++++++ ++ll++l+  e   ++ + +ie +le+
  KOO25247.1  45 ATQLHERMTRAKRDLDSRNQPQQKKVEVLQELLRELRKTEDPASQTLRDIEYDLEE 100
                 45667788899999***************************************985 PP

>> DUF1664  Protein of unknown function (DUF1664)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.4   0.00014      0.29      39     105 ..      34     100 ..      23     106 .. 0.91

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00014
     DUF1664  39 lsdavesvskqleqvseslaatkrhLssridrvdkkldeqkeiskeikeevtevredlseigedves 105
                 +++a++   k  +q+ e ++++kr+L sr +  +kk++  +e+ +e+++  + +++ l++i+ d+e+
  KOO25247.1  34 MQSALHAWDKAATQLHERMTRAKRDLDSRNQPQQKKVEVLQELLRELRKTEDPASQTLRDIEYDLEE 100
                 899999999999**************************************9*********9999875 PP

>> MIP-T3_C  Microtubule-binding protein MIP-T3 C-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.0   3.5    0.0013       2.5      81     130 ..      32      81 ..      30      85 .. 0.93
   2 ?    7.3   3.8    0.0022       4.4      37      88 ..      55     106 ..      42     108 .. 0.82

  Alignments for each domain:
  == domain 1  score: 8.0 bits;  conditional E-value: 0.0013
    MIP-T3_C  81 dsMqrELemWrseyrqqaeelaeerrateealeplkaqlaeleeaIkdqk 130
                 d Mq  L+ W + ++q +e + +++r  ++  +p +++++ l+e +++ +
  KOO25247.1  32 DPMQSALHAWDKAATQLHERMTRAKRDLDSRNQPQQKKVEVLQELLRELR 81 
                 78*************************************99999888765 PP

  == domain 2  score: 7.3 bits;  conditional E-value: 0.0022
    MIP-T3_C  37 aessakkeravsaseiekLresiQkltksvnPLgklldfiqdDidsMqrELe 88 
                 a++  ++ ++ +++++e L+e + +l k   P  + l  i+ D++   +EL+
  KOO25247.1  55 AKRDLDSRNQPQQKKVEVLQELLRELRKTEDPASQTLRDIEYDLEEALKELH 106
                 345567889999**********************************999996 PP

>> DnaB_bind  DnaB-helicase binding domain of primase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.6   0.3     0.001       2.1       9      38 ..      54      87 ..      50      91 .. 0.83
   2 ?   -1.2   0.0       1.2   2.5e+03      37      52 ..     264     279 ..     257     280 .. 0.85
   3 ?    0.7   0.2       0.3     6e+02      31      49 ..     399     417 ..     397     418 .. 0.85

  Alignments for each domain:
  == domain 1  score: 8.6 bits;  conditional E-value: 0.001
                TTT--TTSH....HHHHHHHHHHHHHHTTSSSHH CS
   DnaB_bind  9 legydlstp....egkaravrealpllaripdpi 38
                +++ dl++     ++k++ ++e+l+ l+++ dp+
  KOO25247.1 54 RAKRDLDSRnqpqQKKVEVLQELLRELRKTEDPA 87
                5677777777789*******************97 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 1.2
                 HHHHHHHHHHHHHHHT CS
   DnaB_bind  37 pieRdlYirrlAerlg 52 
                 +++++l +r+l e+lg
  KOO25247.1 264 GVLQRLILRQLPEELG 279
                 7899999999999988 PP

  == domain 3  score: 0.7 bits;  conditional E-value: 0.3
                 HTTSSSHHHHHHHHHHHHH CS
   DnaB_bind  31 laripdpieRdlYirrlAe 49 
                 lar++ ++eR++++++l e
  KOO25247.1 399 LARTRLELEREEFVNELRE 417
                 78888899******99977 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (433 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       954  (0.0532099); expected 358.6 (0.02)
Passed bias filter:                      616  (0.0343577); expected 358.6 (0.02)
Passed Vit filter:                       100  (0.00557756); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.53u 0.29s 00:00:00.82 Elapsed: 00:00:00.40
# Mc/sec: 3264.23
//
Query:       KOO25248.1  [L=276]
Description: putative u3 small nucleolar RNA-associated protein 11-like protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    7.1e-62  209.5  10.5    8.2e-62  209.3  10.5    1.0  1  Utp11          Utp11 protein
     0.0075   15.6   0.8      0.013   14.8   0.2    1.6  2  SLATT_5        SMODS and SLOG-associating 2TM effector domain
  ------ inclusion threshold ------
      0.052   13.1   0.0      0.075   12.5   0.0    1.2  1  DHBP_synthase  3,4-dihydroxy-2-butanone 4-phosphate synthase
       0.18   12.4   3.5          1   10.0   0.0    3.2  3  DUF4810        Domain of unknown function (DUF4810)


Domain annotation for each model (and alignments):
>> Utp11  Utp11 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  209.3  10.5   1.8e-65   8.2e-62       2     245 .]      12     276 .]      11     276 .] 0.86

  Alignments for each domain:
  == domain 1  score: 209.3 bits;  conditional E-value: 1.8e-65
       Utp11   2 rnHkERsQpaeRaklGlLEKkKDYklRAkdyhkKqaklkaLreKAaerNpDEFyfgMiksktkkgvhvekekdrgnealsedqvkllktqDlnYvrtkr 100
                 r+ +ERsQpa+Ra+lGlLEKkKDYklRAkd+hkK++ +++L+eKAa rNpDEFyf+M ++kt++gvh +    ++ e+ + d +k  k +D +Y+ +k+
  KOO25248.1  12 RSYRERSQPAARAHLGLLEKKKDYKLRAKDFHKKEDAIRKLKEKAAFRNPDEFYFKMNNTKTEDGVHRK----QAAEQPTADDMKQFKREDSGYLMVKQ 106
                 899****************************************************************62....34556799****************** PP

       Utp11 101 aierkkiekleeelhlleaeakseakeskkkkknkhivFvdseeeakefdaaekfetepelleeeee................................ 167
                 ++e+kkie+l+++lh+l+a             +nkh++Fvd++ +a+ +d   +  t +el +++                                  
  KOO25248.1 107 TAEAKKIERLRASLHMLDAPL-----------QNKHTIFVDDAASARGIDMSARGATPAELASSK-Plrrgagggagpssssastmedevdgedgsvaa 193
                 *****************9644...........478*******************99999999944.369******999877777777777777777766 PP

       Utp11 168 ......eekeerkenrkkvkq..........k.ekkkeklykeLkarlerekqLkkaeqelelqralmkkgakkkvkkgkkkk.aavykwkkeRkr 245
                       +                        k e++++++y+e+++r +r+++++++ q++ +++al +kg ++k+k   ++  ++v kw++ R++
  KOO25248.1 194 pppgapA-------------GssqlskkamaKlERERAAHYEEFQQRTARHDKMARTLQRIGIEKALLGKGPRRKIKATVEGIvKKVHKWRQRRQK 276
                 6655441.............033333332223599************************************99999995544327899***99986 PP

>> SLATT_5  SMODS and SLOG-associating 2TM effector domain family 5
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.2   2.9e-06     0.013      79     107 ..      27      55 ..      25      74 .. 0.87
   2 ?   -3.0   0.0      0.86   3.9e+03      86     104 ..     223     241 ..     219     251 .. 0.82

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 2.9e-06
     SLATT_5  79 sllessknykerAekfhkcaleLselyne 107
                 +lle++k+yk+rA+ fhk    +++l+++
  KOO25248.1  27 GLLEKKKDYKLRAKDFHKKEDAIRKLKEK 55 
                 799***********************986 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 0.86
     SLATT_5  86 nykerAekfhkcaleLsel 104
                 ++++r  +++k a+ L+++
  KOO25248.1 223 EFQQRTARHDKMARTLQRI 241
                 7889999999999999987 PP

>> DHBP_synthase  3,4-dihydroxy-2-butanone 4-phosphate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   1.7e-05     0.075      30     108 ..      82     159 ..      60     182 .. 0.83

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 1.7e-05
                    EGGG--HHHHHHHHHHB-S--EEEEEHHHHHHTT--BSSSS-SSTT---BB--EEESST-SSS-SHHHHHHHHHHHH-T CS
  DHBP_synthase  30 aAekvtpekvafmirhasGlicvalteeradeLeLplmveenedkhktaftvsvdaaegttTGIsaaDRalTirkladp 108
                    aAe+ t+++++ + r+ sG+++v  t+e  +  +L    +  + + +++ t+ vd a     GI  + R  T  +la++
     KOO25248.1  82 AAEQPTADDMKQFKREDSGYLMVKQTAEAKKIERLRASLHMLDAPLQNKHTIFVDDA-ASARGIDMSARGATPAELASS 159
                    89*******************998777665555555555557789999********9.899***************985 PP

>> DUF4810  Domain of unknown function (DUF4810)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   0.0   0.00022         1      33      73 ..       8      48 ..       2      58 .. 0.89
   2 ?   -1.1   0.1      0.65   2.9e+03      52      64 ..     100     112 ..      71     124 .. 0.68
   3 ?    1.3   0.2      0.11   5.1e+02      26      70 ..     177     215 ..     168     231 .. 0.67

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.00022
     DUF4810 33 iekaeakgkkvpPGlyAelGllylkegkkeeaieafekEke 73
                + k ++ +++ +P  +A+lGll  k++ k  a+++ +kE +
  KOO25248.1  8 VLKTRSYRERSQPAARAHLGLLEKKKDYKLRAKDFHKKEDA 48
                55677889999***********************9999975 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 0.65
     DUF4810  52 Gllylkegkkeea 64 
                 G+l++k+  +++ 
  KOO25248.1 100 GYLMVKQTAEAKK 112
                 4444444444444 PP

  == domain 3  score: 1.3 bits;  conditional E-value: 0.11
     DUF4810  26 ieklekiiekaeakgkkvpPGlyAelGllylkegkkeeaieafek 70 
                  +++e+ ++  + +  ++pPG  A    l        +a++++e+
  KOO25248.1 177 ASTMEDEVDGEDGSVAAPPPGAPAGSSQLSK------KAMAKLER 215
                 5667778888888888888888876555543......34444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (276 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       929  (0.0518155); expected 358.6 (0.02)
Passed bias filter:                      346  (0.0192983); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.46u 0.25s 00:00:00.71 Elapsed: 00:00:00.42
# Mc/sec: 1959.53
//
Query:       KOO25249.1  [L=78]
Description: hypothetical protein Ctob_000550 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
     0.0018   18.4   3.7      0.032   14.4   3.7    2.0  1  Apc13p    Apc13p protein
  ------ inclusion threshold ------
      0.063   13.8   0.0      0.074   13.5   0.0    1.2  1  DUF4193   Domain of unknown function (DUF4193)


Domain annotation for each model (and alignments):
>> Apc13p  Apc13p protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.4   3.7   3.5e-06     0.032       7      51 ..       9      50 ..       2      74 .. 0.72

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 3.5e-06
      Apc13p  7 yvhldashhailaeewnkdrLppddvavplekldpvrteeeedvv 51
                 vh +   ++++++ew+ + L  dd   p  +ld  +   +e ++
  KOO25249.1  9 HVHQPPALLDLIDDEWRAESLGHDDFDLPTTDLDSDN---DEVRA 50
                577788899********************99995444...33332 PP

>> DUF4193  Domain of unknown function (DUF4193)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.0   8.3e-06     0.074      42      69 ..      30      57 ..      16      75 .. 0.85

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 8.3e-06
     DUF4193 42 aaesfelPgadlsgeelsvrvipkqadE 69
                  ++f+lP++dl + + +vr +pk++dE
  KOO25249.1 30 GHDDFDLPTTDLDSDNDEVRAMPKRNDE 57
                5789***********************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (78 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       308  (0.0171789); expected 358.6 (0.02)
Passed bias filter:                      265  (0.0147805); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.34u 0.28s 00:00:00.62 Elapsed: 00:00:00.41
# Mc/sec: 567.03
//
Query:       KOO25250.1  [L=451]
Description: heat shock protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
   5.6e-101  338.6   0.2   7.6e-101  338.1   0.2    1.1  1  HSP70         Hsp70 protein
    4.5e-13   48.7   5.5    1.2e-08   34.2   0.7    3.0  3  MreB_Mbl      MreB/Mbl protein
    8.8e-09   35.7   0.3     0.0014   19.0   0.0    3.3  3  FtsA          Cell division protein FtsA
  ------ inclusion threshold ------
      0.047   12.7   4.1       0.15   11.0   4.1    1.9  1  DDR           Diol dehydratase reactivase ATPase-like domain
      0.052   13.2   3.2      0.062   12.9   1.2    2.0  2  TPP_enzyme_N  Thiamine pyrophosphate enzyme, N-terminal TPP b
       0.17   11.1   0.0       0.33   10.2   0.0    1.4  1  StbA          StbA protein


Domain annotation for each model (and alignments):
>> HSP70  Hsp70 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  338.1   0.2  2.5e-104  7.6e-101       2     379 ..      34     432 ..      33     436 .. 0.89

  Alignments for each domain:
  == domain 1  score: 338.1 bits;  conditional E-value: 2.5e-104
                 EEEEEXSSEEEEEEEETTEEEEEXXTTSXSSEESEEEEXTTS....EEETHHHHHCTTTTGGGEEEXGGGTTTXBTTSHHHHHHHTTXSSEEEEE.... CS
       HSP70   2 iGiDLGttnsvvavmeggkievianeegnrttPsvvaFtkke....rlvGeaAkrqavtnpkntvfsvKrliGrkfsdpevqkeikelpykvvkk.... 92 
                 +GiDLGtt s++av+e+g+++vi+n   + +tPsv+ F++ +     +vGe A+  a++ p   v+++Kr+iG++++ ++v++e + lp+ +v      
  KOO25250.1  34 VGIDLGTTFSCIAVFEDGDVTVINNRAKSSITPSVI-FQPADgsapLVVGEGARATAAVAPGTLVYDAKRFIGKRYAREVVEREGRGLPFALVPGlsil 131
                 8*********************************98.666541222579*****************************************998642222 PP

                 .TTSBEEEEEEETTE..EEEHHHHHHHHHHHHHHHHHHHHTSBEEEEEEEEXTTXXHHHHHHHHHHHHHTTXEEEEEEEHHHHHHHHHHTCCSSSCEEE CS
       HSP70  93 .engkavveveaage..kftpeqisamvLkklketaeaylgkkvtdavitvPaYfndaqRqatkdAgkiAGLnvlRivNepTAaalaYGldkkdkernv 188
                  ++ ++ +e +a g+  +++pe++++ ++++l+  aeay+g++v++av++vP  fn +q +atk+A+  AG+nvlR + epTAaa+aYGl+ ++  ++v
  KOO25250.1 132 rSQLEPHLELQAGGQrlRLAPEDVGTLIVHELRMAAEAYVGRTVANAVLAVPVGFNAKQINATKQAAINAGFNVLRTIHEPTAAAMAYGLHTNSMVNTV 230
                 2678999*******9999********************************************************************************* PP

                 EEEEEXSSXEEEEEEEEETTEEEEEEEEEETTXSHHHHHHHHHHHHHHHHHHH...HSXXGGGSHHHHHHHHHHHHHHHHHTTTSSCSEEEEEE..EEE CS
       HSP70 189 lvyDlGggtfdvSilelekGvfevkaTagDthlGGedfDealvehlveefkkk...egidlskdkkalqrlkeaaekaKkeLSsskqteinlei..etv 282
                 +vyD+Gggt dvS+l+l++G+fev a agD++lGG+df   + ehl+++++k     ++++++d +al+ l+e+ae++K eL ++++ +  +e     +
  KOO25250.1 231 MVYDIGGGTLDVSLLNLNNGIFEVIAAAGDNRLGGQDFNMIIFEHLIHRIEKAmpaGSLNVTNDAEALRALREEAERVKLELNDEADCSGVFEEgdTGI 329
                 *************************************************9998333478***********************99766554443211112 PP

                 ETTT......EEEEEEEEHHHHHHHHHHHHHHTHHHHHHHHHHCTEEGGGCSEEEEESGGGGSHHHHHHHHHHTTCHHBSSSHTTTHHHHHHHHHHHHH CS
       HSP70 283 dedg......kdlseklsRakfeelvedllertlepvekalkdaklkkeeidevvlvGGstRiPkvqelvkelfgkepsktvnpDeavaiGAAvqagvl 375
                  + +           ++ Ra+fe lv++ll+r l+pv+ +l+  ++ +e++de+vlvGG++R+ +++ l++e fg++++ +v p eava G A+qa++l
  KOO25250.1 330 VQIDlpqafkAAGPLSVDRAQFEALVQPLLQRALQPVRDVLARVEMGVEDVDELVLVGGTSRMARLRALLRETFGRDLNCDVSPEEAVAHGTAIQAAIL 428
                 222222011133346799********************************************************************************* PP

                 CTCG CS
       HSP70 376 sgee 379
                 +  +
  KOO25250.1 429 TDRK 432
                 9855 PP

>> MreB_Mbl  MreB/Mbl protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.8   0.1     0.014        43       4      47 ..      34      86 ..      31      98 .. 0.60
   2 !   34.2   0.7   3.9e-12   1.2e-08      92     187 ..     174     275 ..     154     294 .. 0.79
   3 !   13.0   0.0   1.1e-05     0.033     235     319 ..     344     425 ..     297     433 .. 0.81

  Alignments for each domain:
  == domain 1  score: 2.8 bits;  conditional E-value: 0.014
                EEEEE-SSEEEEEETTTE..EEEEE.......ES-EEEETTT--EEEESHHHH CS
    MreB_Mbl  4 lgiDLGtantlvyvkgkg..ivlne.......psvvAikkktkkvlavGeeAk 47
                +giDLGt+   + v + g   v+n+       psv+    + ++ l vGe A+
  KOO25250.1 34 VGIDLGTTFSCIAVFEDGdvTVINNrakssitPSVIFQPADGSAPLVVGEGAR 86
                89*****9887765555511555532333333566666666666666666665 PP

  == domain 2  score: 34.2 bits;  conditional E-value: 3.9e-12
                 S--EEEEEE-SS--HHHHHHHHHHHHHTT-SEEEEEEHHHHHHHHTT--TTSS.S-EEEEEE-SS-EEEEEEETTE.....EEEEEEES-SHHHHHHHH CS
    MreB_Mbl  92 skprvvicvPsgiteverrAvkeaakkaGarevllieeplaAAiGaglpveep.sgnmvvdiGggttevavislgg.....ivtsksvrvaGdeldeai 184
                 + ++ v++vP g ++ + +A k+aa +aG +    i ep aAA+  gl  +   +  mv diGggt +v+++ l++     i  +   r++G++++  i
  KOO25250.1 174 TVANAVLAVPVGFNAKQINATKQAAINAGFNVLRTIHEPTAAAMAYGLHTNSMvNTVMVYDIGGGTLDVSLLNLNNgifevIAAAGDNRLGGQDFNMII 272
                 456789*******************************************98761567999*************97522222333445677777777777 PP

                 HHH CS
    MreB_Mbl 185 iky 187
                  ++
  KOO25250.1 273 FEH 275
                 666 PP

  == domain 3  score: 13.0 bits;  conditional E-value: 1.1e-05
                 EEEEHHHHHHHHHHHHHHHHHHHHHHHHTS-HHHHHHHHHH-EEEESGGGGSBTHHHHHHHHHSS-EEE-SSTTTHHHHHHHHTT CS
    MreB_Mbl 235 vevsseevrealkepvsaiveavkevLektppeLaadivdrgivltGGgallkgldkllseetglpvkvaedpltcvakGtgkvl 319
                 ++v+ ++ +  ++  +++ ++ v+ vL ++    + d+ d  +vl+GG++ +  l+ ll+e++g   ++  +p ++va+Gt++ +
  KOO25250.1 344 LSVDRAQFEALVQPLLQRALQPVRDVLARVEMG-VEDV-D-ELVLVGGTSRMARLRALLRETFGRDLNCDVSPEEAVAHGTAIQA 425
                 567778888888888999999999999887544.3454.4.37889***********************************8765 PP

>> FtsA  Cell division protein FtsA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.8   0.0   0.00017      0.52       1      22 [.      34      55 ..      34     148 .. 0.91
   2 ?    2.2   0.1     0.079   2.4e+02       3      27 ..     233     256 ..     231     261 .. 0.69
   3 !   19.0   0.0   4.7e-07    0.0014       5      88 ..     263     413 ..     263     429 .. 0.73

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00017
                EEEEE-SSSEEEEEEETTEEEE CS
                xxxxxxxxxxxxxxxxxxxxxx RF
        FtsA  1 alvDiGagktdvavaedgalvh 22
                +++D+G++ +++av+edg ++ 
  KOO25250.1 34 VGIDLGTTFSCIAVFEDGDVTV 55
                68***************96554 PP

  == domain 2  score: 2.2 bits;  conditional E-value: 0.079
                 EEE-SSSEEEEEEETTEEEE..EEEES CS
                 xxxxxxxxxxxxxxxxxxxx..xxxxx RF
        FtsA   3 vDiGagktdvavaedgalvh..lrvig 27 
                  DiG+g+ dv++++ +   +  ++vi 
  KOO25250.1 233 YDIGGGTLDVSLLNLN---NgiFEVIA 256
                 5**********99885...12355555 PP

  == domain 3  score: 19.0 bits;  conditional E-value: 4.7e-07
                 E-SSSEEEEEEETTEEEE..EEEES--HHHHHHHHHHHHT--HHHHHHHHHHH--S--.................EEEEEHHHHH.............. CS
                 xxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.................xxxxxxxxxx.............. RF
        FtsA   5 iGagktdvavaedgalvh..lrvigvggngitkdiakalrtaveeAerikikyGsala.................ekeigrkels.............. 70 
                 +G++  +++++e+  l+h   +  + g+ ++t+d++ alr   eeAer+k +     +                 +       ++              
  KOO25250.1 263 LGGQDFNMIIFEH--LIHriEKAMPAGSLNVTNDAE-ALRALREEAERVKLEL----NdeadcsgvfeegdtgivQ-------IDlpqafkaagplsvd 347
                 588999999**99..66766899999********87.*************542....2333466677744444440.......3355555566666666 PP

                 ........................................GGGGSTTHHHHHHHHH........T- CS
                 ........................................xxxxxxxxxxxxxxxx........xx RF
        FtsA  71 ........................................ggsalpnleelaeral........sp 88 
                                                         g+s ++ l+ l+++ +        sp
  KOO25250.1 348 raqfealvqpllqralqpvrdvlarvemgvedvdelvlvgGTSRMARLRALLRETFgrdlncdvSP 413
                 66666888888888888888888888888888889999***********99999975555554444 PP

>> DDR  Diol dehydratase reactivase ATPase-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   4.1     5e-05      0.15      74     166 ..     166     260 ..     153     403 .. 0.74

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 5e-05
         DDR  74 Agefslekavglaamvktdklqmqkiaeeleeelgvkvev..ggvEaemAil.GalttPGtekplailDlGaGstDaalieeegevkavhlAGAGe 166
                 A+e  + ++v+ a++      + ++i  + ++ ++   +v  +  E+ +A++   l t  + + +++ D+G+G+ D +l++ ++ +  v +A AG+
  KOO25250.1 166 AAEAYVGRTVANAVLAVPVGFNAKQINATKQAAINAGFNVlrTIHEPTAAAMaYGLHTNSMVNTVMVYDIGGGTLDVSLLNLNNGIFEV-IAAAGD 260
                 6666666666666665555555555555444444433333103456655544156889999999*****************88887764.455554 PP

>> TPP_enzyme_N  Thiamine pyrophosphate enzyme, N-terminal TPP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   1.2   2.1e-05     0.062      19     107 ..     179     277 ..     154     313 .. 0.70
   2 ?   -0.9   0.0      0.37   1.1e+03      14      63 ..     378     430 ..     366     440 .. 0.82

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 2.1e-05
                   EEE---CCCHHHHCCHHCT....TSEEEE-SSHHHHHHHHHHHHHHHTS-EEEEE-CHHHHHHCHHHHHHHHHHT--EEEEEEE--CCCHH...... CS
  TPP_enzyme_N  19 vfgvpGsrilplldalseeq...girvvlarhEqgaafaAdgyaratgkpgvvlvtsgpGatnaltalaeAkvdriPllvlsgdrptslrg...... 106
                   v +vp + + + ++a +++    g++v+++ hE +aa++A g++  +  ++  ++ + +G   +  +l + +   + +++ +gd+    ++      
    KOO25250.1 179 VLAVPVGFNAKQINATKQAAinaGFNVLRTIHEPTAAAMAYGLHTNS--MVNTVMVYDIGGGTLDVSLLNLNNGIFEVIAAAGDNRLGGQDfnmiif 273
                   778888888888888888888889****************9997654..555555567777777788888888888888888888888777555555 PP

                   ...S CS
  TPP_enzyme_N 107 ...q 107
                       
    KOO25250.1 274 ehlI 277
                   4442 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 0.37
                   CT--EEEE---CCCHHHHCCHHCT....TSEEEE-SSHHHHHHHHHHHHHHHT CS
  TPP_enzyme_N  14 lgvehvfgvpGsrilplldalseeq...girvvlarhEqgaafaAdgyaratg 63 
                   ++v++++ v G++ ++ l+al +e    ++++ ++  E +a + A   a +t 
    KOO25250.1 378 EDVDELVLVGGTSRMARLRALLRETfgrDLNCDVSPEEAVAHGTAIQAAILTD 430
                   56888999999999999999999999999999999999999999998887774 PP

>> StbA  StbA protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.0   0.00011      0.33     160     248 ..     225     322 ..     187     327 .. 0.66

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.00011
        StbA 160 deleslLiiDlGGttLDvakvr..gklegiskvkgdskiGvs....litdavkealetaktrtssfl...adeliknrkdeeyLkrrindedkresvl 248
                 + ++ +++ D+GG tLDv+ ++    + ++    gd+++G      +i +++ + +e+a   +s  +   a+ l   r++ e +k ++nde++ + v+
  KOO25250.1 225 SMVNTVMVYDIGGGTLDVSLLNlnNGIFEVIAAAGDNRLGGQdfnmIIFEHLIHRIEKAMPAGSLNVtndAEALRALREEAERVKLELNDEADCSGVF 322
                 55678999***********8752233444445679999996422225666666666655544443331115667778888888888888888887776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (451 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       416  (0.0232026); expected 358.6 (0.02)
Passed bias filter:                      329  (0.0183502); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.51u 0.28s 00:00:00.79 Elapsed: 00:00:00.44
# Mc/sec: 3110.92
//
Query:       KOO25251.1  [L=506]
Description: glutamate-1-semialdehyde-2,1-aminomutase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    2.6e-65  220.7   0.0    3.6e-65  220.2   0.0    1.1  1  Aminotran_3  Aminotransferase class-III
  ------ inclusion threshold ------
       0.03   14.1   0.0      0.053   13.3   0.0    1.4  1  DUF228       Lyme disease proteins of unknown function


Domain annotation for each model (and alignments):
>> Aminotran_3  Aminotransferase class-III
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  220.2   0.0     4e-69   3.6e-65       7     361 ..      89     448 ..      84     486 .. 0.89

  Alignments for each domain:
  == domain 1  score: 220.2 bits;  conditional E-value: 4e-69
                  --SCEEEEEEEBTEEEETTS-EEEESSHHHHTTTT-BT-HHHHHHHHHHHTT-S---TTTCEEHHHHHHHHHHHHHCT-..SEEEEESSHHHHHHHHH CS
  Aminotran_3   7 dnlllvitkaeGvyltdvdgkrylDlvssiavvnlGhahPkvvkavkeqaaklshvsfgaltnepalklaekllklapkgldkvflansGseAvetAl 104
                  d++ ++++k++G++ltdvdgk++ D+  ++ +++lG+++++v  av + + +   +s   ++++  +++ +++ +l p+ ++k+ +ansG+eAv++A+
   KOO25251.1  89 DEATVFVSKSKGCVLTDVDGKEFTDFRLGYGPIILGYCDERVDRAVCDEITNRGVIS--GFSTALDAEVIKQVKRLCPQ-IEKMRFANSGTEAVMGAV 183
                  67789********************************************99997777..9999999*************.****************** PP

                  HHHHHHHHHTSHCTT-EEEEETTT---SSHHHHHHSS--.TTTTTTCTTB-TSEEEE-TTBGGGTB-HHHHHHHHHHHHHHHH...CHTCCCEEEEEE CS
  Aminotran_3 105 KlarkyarekkatektkiiafkgafHGrtlgalsvtgsk.kkyktlfgpflpevvrlkypdeevlkeneeeeaalleeleale...kkkkdevaAviv 198
                  ++ar        t +tk+  ++g+fHG     +  ++ +  +++++  p + ++   + p + v+      +   l+ ++ l    ++    +aAv++
   KOO25251.1 184 RTARG------FTGRTKVAIVEGGFHGLQDEVMWKANLEgWNMRSDTTPEVIPFGAGQRPNTAVCCNPTGLTLLSLNNFQMLDeyfHQYGHLTAAVMI 275
                  *****......*******************9998887631467888888888888888888777766665555555555555555599999******* PP

                  -SCETTTTSEB--CCHHHHHHHHHHHHT-EEEEE-TTTTT..TTTSSSSGGGGCTS--SEEEE-GGGGTTSS-EEEEEEHHHHTTS-TTS....B--T CS
  Aminotran_3 199 EpiqgegGvvvaspeflaklrelckkhdvllivDEvqtGf..GrTGklfAlehagvspDlmtlaKaltgGlplsavlataevmqalapgs....hgsT 290
                  Epi g++G ++a++e+l++lr+lc+kh+ +li+DEv++Gf  +  G   A e +g+ +Dl+t aKa+++G+p++++ ++++vm+++ + +    hg+T
   KOO25251.1 276 EPIIGNAGSIAATKEWLQHLRDLCTKHGTMLIFDEVKCGFrvAKGG---AQELYGIYADLTTYAKAMGNGYPVACFGGRKDVMDVIGSFKggvvHGGT 370
                  ****************************************766667...*************************************655589****** PP

                  TTT-HHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHCTT-TTEEEEEEETTEEEEEEBCCCETTC.......H CS
  Aminotran_3 291 fgGnplacavalavleiieeekllenaqelgaalkegLeelqkkyevikevRgkGlmiaielkeeaevke.......k 361
                  f++n++a ++a+a+l+i+e  + l   +++g  + + L ++ ++++v ++  g  +m++i + +++ ++        +
   KOO25251.1 371 FTANMIAISAAHATLDILESTDALATCDRVGTDIMAVLGRVFDAHNVQHTFSGPPAMFGIHFAKDVPQNYrdwrkeeY 448
                  ****************************************************************99977555555541 PP

>> DUF228  Lyme disease proteins of unknown function
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.0     6e-06     0.053      64     104 ..     295     337 ..     255     349 .. 0.86

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 6e-06
      DUF228  64 aksfpykrGvklvvkee..eleveaGgddDlyGvCvDidefsk 104
                  ++ + k G  l+++e     +v++Gg ++lyG+  D+  ++k
  KOO25251.1 295 LRDLCTKHGTMLIFDEVkcGFRVAKGGAQELYGIYADLTTYAK 337
                 67899**********9966789****************99986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (506 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       463  (0.0258241); expected 358.6 (0.02)
Passed bias filter:                      419  (0.02337); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.52u 0.28s 00:00:00.80 Elapsed: 00:00:00.43
# Mc/sec: 3509.86
//
Query:       KOO25252.1  [L=343]
Description: hypothetical protein Ctob_000553 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (343 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       236  (0.013163); expected 358.6 (0.02)
Passed bias filter:                      209  (0.0116571); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.42u 0.26s 00:00:00.68 Elapsed: 00:00:00.40
# Mc/sec: 2605.01
//
Query:       KOO25253.1  [L=598]
Description: protoporphyrinogen oxidase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    9.7e-52  176.8   0.0    1.2e-51  176.5   0.0    1.1  1  Amino_oxidase  Flavin containing amine oxidoreductase
    4.3e-12   46.1   0.1      1e-11   44.9   0.1    1.7  1  NAD_binding_8  NAD(P)-binding Rossmann-like domain
    1.4e-05   24.8   0.0    3.9e-05   23.4   0.0    1.8  1  DAO            FAD dependent oxidoreductase
    0.00012   21.6   0.0    0.00017   21.1   0.0    1.2  1  FAD_oxidored   FAD dependent oxidoreductase
    0.00065   18.9   0.0     0.0012   18.0   0.0    1.4  1  FAD_binding_2  FAD binding domain
     0.0017   17.7   0.3     0.0024   17.2   0.3    1.2  1  FAD_binding_3  FAD binding domain
     0.0042   16.4   0.2     0.0073   15.6   0.2    1.3  1  Pyr_redox_2    Pyridine nucleotide-disulphide oxidoreductase
  ------ inclusion threshold ------
      0.021   14.4   0.0      0.037   13.7   0.0    1.4  1  ApbA           Ketopantoate reductase PanE/ApbA
      0.027   13.8   0.6      0.044   13.1   0.6    1.2  1  ThiF           ThiF family
      0.027   13.6   0.0      0.036   13.1   0.0    1.1  1  GIDA           Glucose inhibited division protein A
       0.03   14.9   0.1      0.063   13.9   0.1    1.5  1  Pyr_redox      Pyridine nucleotide-disulphide oxidoreductase
      0.078   12.0   0.1       0.13   11.3   0.1    1.3  1  Lycopene_cycl  Lycopene cyclase protein
       0.12   11.6   0.2       0.22   10.7   0.2    1.3  1  Thi4           Thi4 family


Domain annotation for each model (and alignments):
>> Amino_oxidase  Flavin containing amine oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  176.5   0.0   8.6e-55   1.2e-51       1     449 [.      61     567 ..      61     570 .. 0.85

  Alignments for each domain:
  == domain 1  score: 176.5 bits;  conditional E-value: 8.6e-55
                    HHHHHHHHHHHHTTEEEEEEESSSSSBTTS-EEEETTEEEESS--EEETTTHHHHHHHHHTTCCCCEEEESCCGCEEEEETTEECC.......... CS
  Amino_oxidase   1 laGLaaArqLlsaGfdVtvlEardrvGGRirtvrsdGylielGamwftgagnpllellkelgledslslpdpgapkrvlskggref.......... 86 
                    ++G + A+ L++aG++V++ Eard vGG + ++  dG+++e+G+++f   ++++ +++ elg++d+l++ d + p  v + +g+ +          
     KOO25253.1  61 ISGSTLAHNLHRAGVNVLLTEARDYVGGNVKSHDEDGFIWEEGPNSFAT-QPSIVRIAYELGISDQLVFADETLPPWV-NHNGKLHplpkgkggkg 154
                    577789*******************************************.*********************9955555.55888885664444444 PP

                    .TTEECHHHHHHHHHHHHHHHH.........CHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
  Amino_oxidase  87 .pgdlspvpaewealleqgals.........aellsleeklrlgleallqktldeldldskslaesleelgrrepgdvevwdrliepelfaklefa 172
                     +g+l+ v +           s          ells+++k+r+++ a++       +++ +  +e ++e   r +g+ ev+ r ++p       f+
     KOO25253.1 155 pKGQLELVFG-----------SngvlkfglaGELLSWPGKIRAAIGAFI-----GHPPAPEGKDENIREWVSRILGE-EVFLRCVDP-------FV 226
                    4444444433...........33334455556*****************.....99999999999999999999**9.9999*****.......** PP

                    HHCHTSTTTTCBHHHHTCCCCHHHHHTSCCCEE........................................TTHTHHHHHHHHH.........T CS
  Amino_oxidase 173 sglfagdpselsaklalpllwelegfggslllp........................................rgGlsqlpealae.........e 219
                    sg++agdp+ ls+++al +  + e ++ ++                                           r+Gl++lp+a+a+          
     KOO25253.1 227 SGVYAGDPETLSMRSALGKIARIERYAYDIEWNkwgaifygglkrqieltkerkadppdpawpkfdygnpgsfRKGLATLPNAIAAelgapvggtP 322
                    ******************************999*****************************************************9999988888 PP

                    TTTEEEETSEEEEEEEEETTCEEEEET...TSTEE.EESEEEE-S-HHHHHSSEEESCCSHHHHHHHHHS.........EEEEEEEEEEEESSGGS CS
  Amino_oxidase 220 lrgldirlntrVkeikregdgvtvtle...dgevv.eaDaVvvTvplgvlkailfsPplpdekaeairnl.........gfgsvnkvilefdrkfw 302
                    +++ ++rl++  ++++r +dg  v +    dg ++  a+ Vv+T+p  +lk   + P +p e++e +++l           ++v+ v +++++k++
     KOO25253.1 323 SPDSKVRLRWAITKLERRADGQYVATFdspDGPQTvVARTVVSTAPAHALK-DVLAPVMP-EAREIFDKLradigrrgiYHPPVAAVTVAYPKKAF 416
                    8888*************9999555555122555559***************.66666334.44444444444445557799*************** PP

                    GCSTS.E.CE...........CECCCEEETTTEEEEECCECCCSTTTEEEEEEEEECHHHHHHHTTS-HHHHHHHHHHHHHHHHT.GTSSTCSEEE CS
  Amino_oxidase 303 ednal.g.qg...........vlvseltttlgeafissdfpsrappgkglvllvyvggdaaneleslsdeelvqavlrdLrklfg.eevpepkatl 384
                    +d +l   +g            +++e+ +tlg+  +ss fp+r pp+ +l ll y+gg ++ +++sls++e+v++v +  r+++  +++p pk   
     KOO25253.1 417 KDVQLaNgFGslrdlpgfgslNPRTEGVRTLGTLWSSSLFPGRCPPDYHL-LLNYIGGSRDVDIASLSEKEIVAEVDKGCRQVLLeADAPPPKVLG 511
                    **9977446667778889999999999999999999999***********.********************************666********** PP

                    EEECCTETTTSSSEEE.BTTHHHHHHHHHHCH..HCSTTEEE.SGGGCTTTTTS.HHHHHHHHHHHHH CS
  Amino_oxidase 385 vtrWhtdplargsysyvsvgpghedydplakp..egdprlffAGehtsreypgt.vegAilSGlraAa 449
                    v+ W   +++       ++  gh+++    +   +  p+l ++G++ s    g+ +++++  G + A 
     KOO25253.1 512 VKLWP-TAIP-------QYELGHQALMEQLEAaeALQPGLWVCGNYRS----GVaFPDCVTFGYEHAK 567
                    ****9.9***.......55555555444444445999*********99....999****998888776 PP

>> NAD_binding_8  NAD(P)-binding Rossmann-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.9   0.1   7.4e-15     1e-11       1      54 [.      56     109 ..      56     120 .. 0.92

  Alignments for each domain:
  == domain 1  score: 44.9 bits;  conditional E-value: 7.4e-15
                    EE--SHHHHHHHHHHHCCTEEEEEE-SSSSSSGGG-EECETTCEECTS---EEE CS
  NAD_binding_8   1 IvGaGlsGlvaAylLakagfdvlllekrdrlGGraasyevpgvrvdygahifhg 54 
                    +vGaG+sG+++A+ L++ag++vll e+rd++GG+++s + +g++ + g++ f++
     KOO25253.1  56 VVGAGISGSTLAHNLHRAGVNVLLTEARDYVGGNVKSHDEDGFIWEEGPNSFAT 109
                    8*************************************************9988 PP

>> DAO  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.4   0.0   2.8e-08   3.9e-05       1      47 [.      53     102 ..      53     146 .. 0.81

  Alignments for each domain:
  == domain 1  score: 23.4 bits;  conditional E-value: 2.8e-08
                 EEEEECTSHHHHHHHHHHHHTT..EEEEESSSSTTS.SGGGSSEEEEESS CS
         DAO   1 dvviiGGGiiGlstAyeLarrg..Vtllekgdiags.gaSgrnsgllhsg 47 
                 d +++G+Gi G++ A+ L r+g  V+l e++d +g    S+   g+++  
  KOO25253.1  53 DCLVVGAGISGSTLAHNLHRAGvnVLLTEARDYVGGnVKSHDEDGFIWEE 102
                 779***************999***********999547788887888664 PP

>> FAD_oxidored  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.1   0.0   1.3e-07   0.00017       1      38 [.      53      90 ..      53     101 .. 0.96

  Alignments for each domain:
  == domain 1  score: 21.1 bits;  conditional E-value: 1.3e-07
  FAD_oxidored  1 DvvVvGGgpaGvaAAiaAaraGakvlLveergvlGGll 38
                  D +VvG+g++G + A    raG +vlL+e r+++GG++
    KOO25253.1 53 DCLVVGAGISGSTLAHNLHRAGVNVLLTEARDYVGGNV 90
                  89**********************************97 PP

>> FAD_binding_2  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.0   0.0     9e-07    0.0012       1      37 [.      53      89 ..      53     106 .. 0.90

  Alignments for each domain:
  == domain 1  score: 18.0 bits;  conditional E-value: 9e-07
                   SEEEE--SHHHHHHHHHHHHTTT-EEEEESSSGGGSG CS
  FAD_binding_2  1 DviViGsGlAGLaAAleaaeaGlkvavvekeqefgga 37
                   D +V+G+G++G + A+++++aG +v++ e  +++gg+
     KOO25253.1 53 DCLVVGAGISGSTLAHNLHRAGVNVLLTEARDYVGGN 89
                   88*******************************9995 PP

>> FAD_binding_3  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   0.3   1.7e-06    0.0024       2      34 ..      52      84 ..      51      94 .. 0.87

  Alignments for each domain:
  == domain 1  score: 17.2 bits;  conditional E-value: 1.7e-06
                   EEEEEE--SHHHHHHHHHHHHTTHHEEEEESSS CS
  FAD_binding_3  2 tdVlIVGaGpaGlmlallLseaGvrvvlvekrs 34
                   +d l+VGaG +G +la+ L++aGv+v+l e r+
     KOO25253.1 52 VDCLVVGAGISGSTLAHNLHRAGVNVLLTEARD 84
                   6889***********************999876 PP

>> Pyr_redox_2  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.2   5.3e-06    0.0073     143     178 ..      52      87 ..      27      96 .. 0.80

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 5.3e-06
                  SEEEEES-SHHHHHHHHHHHHHT-EEEEEESSSSSS CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2 143 krivvvGgGyiGvElAaalaklgkevtlveardrll 178
                   +++vvG+G  G+ lA  l+++g++v l eard + 
   KOO25253.1  52 VDCLVVGAGISGSTLAHNLHRAGVNVLLTEARDYVG 87 
                  567899999999999999999999999999888776 PP

>> ApbA  Ketopantoate reductase PanE/ApbA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.0   2.7e-05     0.037       2      27 ..      55      80 ..      54     108 .. 0.89

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 2.7e-05
                EEES-SHHHHHHHHHHHHHTHCEEEE CS
        ApbA  2 ailGaGaiGsllaakLakagadvtli 27
                +++GaG  Gs+la++L++ag +v l 
  KOO25253.1 55 LVVGAGISGSTLAHNLHRAGVNVLLT 80
                79********************9986 PP

>> ThiF  ThiF family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.6   3.2e-05     0.044      15      43 ..      48      76 ..      40      84 .. 0.91

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 3.2e-05
                HHHTSEEEEE--SHHHHHHHHHHHHHTTT CS
                xxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        ThiF 15 kLrdskvllvGaGglGsellknLalsGvg 43
                 ++ + +l+vGaG  Gs l++nL ++Gv 
  KOO25253.1 48 TIEGVDCLVVGAGISGSTLAHNLHRAGVN 76
                578899*********************96 PP

>> GIDA  Glucose inhibited division protein A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.0   2.6e-05     0.036       1      33 [.      53      84 ..      53     110 .. 0.83

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 2.6e-05
                CEEEE-SSHHHHHHHHHHHHTT--EEEEES-GG CS
        GIDA  1 dviViGgGhAGceAAlaaarlGakvlLithkld 33
                d+ V+G+G +G+  A ++ r+G++vlL  +  d
  KOO25253.1 53 DCLVVGAGISGSTLAHNLHRAGVNVLLT-EARD 84
                789**********************998.3333 PP

>> Pyr_redox  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.1   4.5e-05     0.063       3      35 ..      55      87 ..      53      96 .. 0.90

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 4.5e-05
                EEECSSHHHHHHHHHHHHTTSEEEEEESSSSSS CS
   Pyr_redox  3 vvvGgGyiglElAgalaelgkkVtvversdkll 35
                +vvG+G +g  lA +l++ g +V + e++d + 
  KOO25253.1 55 LVVGAGISGSTLAHNLHRAGVNVLLTEARDYVG 87
                8****************************9887 PP

>> Lycopene_cycl  Lycopene cyclase protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.1   9.5e-05      0.13       1      36 [.      53      86 ..      53      96 .. 0.90

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 9.5e-05
  Lycopene_cycl  1 DvvviGaGpAglslAarlteakpglkvvlieaspsl 36
                   D +v+GaG  g  lA++l   ++g++v+l ea + +
     KOO25253.1 53 DCLVVGAGISGSTLAHNL--HRAGVNVLLTEARDYV 86
                   889***************..**********997765 PP

>> Thi4  Thi4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.2   0.00016      0.22      17      56 ..      51      89 ..      43      93 .. 0.90

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00016
                EEEEEEE--SHHHHHHHHHHHHCTTS-EEEEESSSS--TT CS
        Thi4 17 esDvvivGaGssGLtaayylakkpdlkvailersvspGGG 56
                  D ++vGaG sG t a+ l ++ +++v++ e++  +GG 
  KOO25253.1 51 GVDCLVVGAGISGSTLAHNLHRA-GVNVLLTEARDYVGGN 89
                5799******************9.*********9999885 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (598 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       337  (0.0187964); expected 358.6 (0.02)
Passed bias filter:                      314  (0.0175135); expected 358.6 (0.02)
Passed Vit filter:                        51  (0.00284455); expected 17.9 (0.001)
Passed Fwd filter:                        13  (0.000725082); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 0.53u 0.24s 00:00:00.77 Elapsed: 00:00:00.37
# Mc/sec: 4782.51
//
Query:       KOO25254.1  [L=651]
Description: hypothetical protein Ctob_000555 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
     0.0025   17.8   0.7      0.012   15.6   0.2    2.3  2  DUF1736   Domain of unknown function (DUF1736)
     0.0027   17.8   0.0     0.0051   16.9   0.0    1.4  1  DnaJ      DnaJ domain


Domain annotation for each model (and alignments):
>> DUF1736  Domain of unknown function (DUF1736)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.0      0.43   3.9e+03      14      32 ..     452     470 ..     451     473 .. 0.74
   2 !   15.6   0.2   1.3e-06     0.012      33      62 ..     530     559 ..     526     562 .. 0.90

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 0.43
     DUF1736  14 aafapslltRaltynYllv 32 
                 a+fa  + +R+l + ++++
  KOO25254.1 452 ASFAAGVSLRLLAFDWMPA 470
                 6777778888888888876 PP

  == domain 2  score: 15.6 bits;  conditional E-value: 1.3e-06
     DUF1736  33 lnlwLLlfPsqLcfDWsmgsIpliesllDp 62 
                 l + LLl+P   c+ Ws+ ++ l+++l D 
  KOO25254.1 530 LKVVLLLLPVLACCQWSLRCVRLVRRLRDE 559
                 6788**********************9995 PP

>> DnaJ  DnaJ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   0.0   5.7e-07    0.0051       5      53 ..      71     124 ..      69     130 .. 0.72

  Alignments for each domain:
  == domain 1  score: 16.9 bits;  conditional E-value: 5.7e-07
                 HHTSSTTG-HHHHHHHHHHHHHHHSTTTSCCHH.....HHHHHHHHHHHHHHHH CS
        DnaJ   5 iLgvskdasedeIkkaYrklalkyHPDknpkdp.....eaeekFkeineAyevL 53 
                 +Lg  +  s++ I +aYr+l++  HPDk  +++     + e  Fk+ + A e L
  KOO25254.1  71 VLGTWSPVSKSGISRAYRQLSVCTHPDKLIGHSaadihSGEMLFKRASGAREQL 124
                 677777889999***************874444211234455677666666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (651 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       783  (0.0436723); expected 358.6 (0.02)
Passed bias filter:                      433  (0.0241508); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.61u 0.23s 00:00:00.84 Elapsed: 00:00:00.39
# Mc/sec: 5009.95
//
Query:       KOO25255.1  [L=2112]
Description: protein nlrc3 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.9e-17   61.8  33.8       0.02   14.9   0.1   12.0 12  LRR_6     Leucine Rich repeat
    4.1e-08   33.4  23.0        0.9   10.1   0.0    8.8  8  LRR_4     Leucine Rich repeats (2 copies)
    6.1e-07   28.7  36.9       0.11   12.4   0.9    6.0  5  IQ        IQ calmodulin-binding motif
      0.001   19.0   0.0     0.0041   17.1   0.0    2.1  1  NACHT     NACHT domain
  ------ inclusion threshold ------
      0.012   16.0  10.4         64    4.7   0.0    8.6 10  LRR_1     Leucine Rich Repeat
      0.012   15.8   0.1       0.14   12.4   0.0    2.8  2  AAA_22    AAA domain
      0.034   13.9  27.0       0.26   11.1   0.9    8.3  9  LRR_8     Leucine rich repeat
      0.036   14.6   0.0       0.18   12.4   0.0    2.2  1  AAA_18    AAA domain


Domain annotation for each model (and alignments):
>> LRR_6  Leucine Rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.7   0.1   4.6e-05       0.1       4      21 ..    1507    1524 ..    1507    1527 .. 0.91
   2 ?   -2.8   0.0       4.2   9.4e+03       5      17 ..    1540    1552 ..    1538    1560 .. 0.67
   3 !    9.1   0.1   0.00063       1.4       4      23 ..    1568    1587 ..    1567    1588 .. 0.89
   4 ?    4.6   0.9     0.018        41       2      21 ..    1667    1686 ..    1666    1689 .. 0.93
   5 ?    2.6   0.0     0.081   1.8e+02       2      24 .]    1695    1717 ..    1694    1717 .. 0.91
   6 !    6.1   0.0    0.0061        14       2      23 ..    1723    1744 ..    1722    1745 .. 0.91
   7 ?   -0.3   0.0      0.69   1.5e+03       3      23 ..    1799    1819 ..    1797    1820 .. 0.76
   8 !   10.0   0.3   0.00033      0.75       2      20 ..    1871    1889 ..    1871    1893 .. 0.90
   9 ?    4.7   0.0     0.017        37       6      24 .]    1902    1920 ..    1900    1920 .. 0.91
  10 !   10.3   0.1   0.00028      0.63       2      16 ..    1926    1940 ..    1925    1941 .. 0.89
  11 !   14.9   0.1   8.8e-06      0.02       5      23 ..    1967    1985 ..    1963    1986 .. 0.92
  12 ?    0.2   0.1      0.45     1e+03       4      17 ..    2027    2040 ..    2024    2041 .. 0.85

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 4.6e-05
       LRR_6    4 hLteLdLsgNdIgDeGae 21  
                  +L +L+Ls NdIgD G++
  KOO25255.1 1507 TLFTLNLSENDIGDLGVQ 1524
                  789*************97 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 4.2
       LRR_6    5 LteLdLsgNdIgD 17  
                  L++L L+++++++
  KOO25255.1 1540 LRSLMLRSCGMNN 1552
                  8899999998653 PP

  == domain 3  score: 9.1 bits;  conditional E-value: 0.00063
       LRR_6    4 hLteLdLsgNdIgDeGaeaL 23  
                   Lt Ld++ N+++DeG+  +
  KOO25255.1 1568 RLTLLDIRTNKLTDEGMLEI 1587
                  6999************9876 PP

  == domain 4  score: 4.6 bits;  conditional E-value: 0.018
       LRR_6    2 nthLteLdLsgNdIgDeGae 21  
                  n +L+ LdL+  +++D G++
  KOO25255.1 1667 NKTLEVLDLTNVNLDDNGVS 1686
                  89****************96 PP

  == domain 5  score: 2.6 bits;  conditional E-value: 0.081
       LRR_6    2 nthLteLdLsgNdIgDeGaeaLa 24  
                  +++++ L L  +++g  Ga +La
  KOO25255.1 1695 HPTIKVLRLDNCNFGEGGAGSLA 1717
                  689***************99887 PP

  == domain 6  score: 6.1 bits;  conditional E-value: 0.0061
       LRR_6    2 nthLteLdLsgNdIgDeGaeaL 23  
                  +++L eL+++ N+I  +G++ +
  KOO25255.1 1723 KSSLVELSVANNHIHEVGVKHI 1744
                  589****************988 PP

  == domain 7  score: -0.3 bits;  conditional E-value: 0.69
       LRR_6    3 thLteLdLsgNdIgDeGaeaL 23  
                   +Lt+Ld++  ++ De ++ L
  KOO25255.1 1799 LSLTKLDIRQVGLRDEDIQML 1819
                  689****99877777776665 PP

  == domain 8  score: 10.0 bits;  conditional E-value: 0.00033
       LRR_6    2 nthLteLdLsgNdIgDeGa 20  
                  n +L + dL++N++gD Ga
  KOO25255.1 1871 NLNLIHIDLQSNQLGDNGA 1889
                  77999*************8 PP

  == domain 9  score: 4.7 bits;  conditional E-value: 0.017
       LRR_6    6 teLdLsgNdIgDeGaeaLa 24  
                  + L++s+N I  eG++a a
  KOO25255.1 1902 ERLNMSHNFIRVEGMSAVA 1920
                  68**************986 PP

  == domain 10  score: 10.3 bits;  conditional E-value: 0.00028
       LRR_6    2 nthLteLdLsgNdIg 16  
                  n +Lt+LdLs+N+I 
  KOO25255.1 1926 NVSLTYLDLSSNEIC 1940
                  789**********95 PP

  == domain 11  score: 14.9 bits;  conditional E-value: 8.8e-06
       LRR_6    5 LteLdLsgNdIgDeGaeaL 23  
                  L++L+Ls+N ++ +Ga+aL
  KOO25255.1 1967 LRTLNLSSNALSSAGAKAL 1985
                  9*****************9 PP

  == domain 12  score: 0.2 bits;  conditional E-value: 0.45
       LRR_6    4 hLteLdLsgNdIgD 17  
                  +L+ L+L +N+I++
  KOO25255.1 2027 SLKMLELGSNHISG 2040
                  6888********86 PP

>> LRR_4  Leucine Rich repeats (2 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.6   0.5     0.042        94      11      42 ..    1489    1521 ..    1480    1523 .. 0.68
   2 ?   -0.3   0.0      0.72   1.6e+03      23      38 ..    1567    1581 ..    1540    1589 .. 0.71
   3 ?    2.9   0.5     0.071   1.6e+02       3      32 ..    1670    1705 ..    1640    1708 .. 0.64
   4 !    9.4   0.0   0.00063       1.4       2      33 ..    1725    1762 ..    1724    1769 .. 0.85
   5 !   10.1   0.0    0.0004       0.9       2      36 ..    1873    1911 ..    1872    1918 .. 0.83
   6 !    8.6   0.1    0.0011       2.6       4      38 ..    1902    1938 ..    1899    1944 .. 0.74
   7 !    8.8   0.4   0.00097       2.2       1      35 [.    1965    2005 ..    1965    2014 .. 0.79
   8 ?    0.3   0.0      0.46     1e+03       2      17 ..    2027    2042 ..    2026    2050 .. 0.80

  Alignments for each domain:
  == domain 1  score: 3.6 bits;  conditional E-value: 0.042
                  S-..--E-S-.HHH.-TT.--EEE-.-S-----GGGG CS
       LRR_4   11 Nq..ltdipl.lek.lpn.LkeLdLsgNnlitdldeL 42  
                  N+  l d++  +++ lp  L +L+Ls+N    d+ +L
  KOO25255.1 1489 NRlsLEDLSIlCKGfLPGtLFTLNLSEN----DIGDL 1521
                  5533555555444889999******999....88766 PP

  == domain 2  score: -0.3 bits;  conditional E-value: 0.72
                  TT--EEE-.-S----- CS
       LRR_4   23 pnLkeLdLsgNnlitd 38  
                    L+ Ld+ + n++td
  KOO25255.1 1567 SRLTLLDI-RTNKLTD 1581
                  56777777.6557665 PP

  == domain 3  score: 2.9 bits;  conditional E-value: 0.071
                  --EEE--S.....S---E-S-.HHH-TT--EEE-.- CS
       LRR_4    3 LevLdLsn.....Nqltdipl.leklpnLkeLdLsg 32  
                  LevLdL n     N ++ i++ l   p  k+L L +
  KOO25255.1 1670 LEVLDLTNvnlddNGVSIISSaLTTHPTIKVLRLDN 1705
                  555555542222255555555444556677777744 PP

  == domain 4  score: 9.4 bits;  conditional E-value: 0.00063
                  S--EEE--SS---E-S-....HH..H-TT--EEE-.-S CS
       LRR_4    2 nLevLdLsnNqltdipl....le..klpnLkeLdLsgN 33  
                  +L +L+ +nN++ +++     l+  +l++L++L + gN
  KOO25255.1 1725 SLVELSVANNHIHEVGVkhivLAaiSLTSLQVLRVDGN 1762
                  7899*************987744889*********888 PP

  == domain 5  score: 10.1 bits;  conditional E-value: 0.0004
                  S--EEE--SS---E-S-..HH.H-TT..--EEE-.-S--- CS
       LRR_4    2 nLevLdLsnNqltdipl..le.klpn..LkeLdLsgNnli 36  
                  nL+++dL++Nql d +   l+ +l     + L++s+N +i
  KOO25255.1 1873 NLIHIDLQSNQLGDNGAawLAhGLVGsaVERLNMSHN-FI 1911
                  9*************99977554466677******999.66 PP

  == domain 6  score: 8.6 bits;  conditional E-value: 0.0011
                  -EEE--SS---E-S-......HHH-TT--EEE-.-S----- CS
       LRR_4    4 evLdLsnNqltdipl......leklpnLkeLdLsgNnlitd 38  
                  e L+ s+N ++  +       l+++ +L++LdLs+N     
  KOO25255.1 1902 ERLNMSHNFIRVEGMsavasaLKGNVSLTYLDLSSN----E 1938
                  789999999995555655544447999******999....3 PP

  == domain 7  score: 8.8 bits;  conditional E-value: 0.00097
                  SS--EEE--SS---E-S-..HH....H-TT--EEE-.-S-- CS
       LRR_4    1 pnLevLdLsnNqltdipl..le....klpnLkeLdLsgNnl 35  
                  + L++L+Ls+N l++ +   l     + + L+ L L +Nnl
  KOO25255.1 1965 TALRTLNLSSNALSSAGAkaLVpvvrNGKALRDLMLVDNNL 2005
                  57*************99987335576789999999888843 PP

  == domain 8  score: 0.3 bits;  conditional E-value: 0.46
                  S--EEE--SS---E-S CS
       LRR_4    2 nLevLdLsnNqltdip 17  
                  +L+ L L++N+++ + 
  KOO25255.1 2027 SLKMLELGSNHISGVT 2042
                  7999999999999765 PP

>> IQ  IQ calmodulin-binding motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.8   2.0    0.0014       3.1       2      19 ..     123     140 ..     122     141 .. 0.93
   2 !   12.4   0.9   4.8e-05      0.11       2      19 ..     153     170 ..     152     172 .. 0.91
   3 !   11.3   0.4   0.00011      0.24       1      19 [.     181     199 ..     181     199 .. 0.95
   4 !   11.5   2.9   9.5e-05      0.21       2      19 ..     463     480 ..     462     482 .. 0.92
   5 !    6.1   2.7    0.0048        11       1      19 [.     485     503 ..     485     505 .. 0.91

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 0.0014
                 HHHHHHHHHHHHHHHHHH CS
          IQ   2 kaaikIQaawRGylaRkr 19 
                 +aa+ +Q++ R +l Rk+
  KOO25255.1 123 AAACALQRRARSHLFRKH 140
                 69***************8 PP

  == domain 2  score: 12.4 bits;  conditional E-value: 4.8e-05
                 HHHHHHHHHHHHHHHHHH CS
          IQ   2 kaaikIQaawRGylaRkr 19 
                 kaai IQ+ +R  +aR+ 
  KOO25255.1 153 KAAIMIQSSFRSRKARQL 170
                 8***************85 PP

  == domain 3  score: 11.3 bits;  conditional E-value: 0.00011
                 HHHHHHHHHHHHHHHHHHH CS
          IQ   1 rkaaikIQaawRGylaRkr 19 
                 +kaa+k Q  wR  +aR++
  KOO25255.1 181 HKAAVKVQTGWRVKMARRE 199
                 79***************96 PP

  == domain 4  score: 11.5 bits;  conditional E-value: 9.5e-05
                 HHHHHHHHHHHHHHHHHH CS
          IQ   2 kaaikIQaawRGylaRkr 19 
                 +aa+ IQ+ +RG +aR+ 
  KOO25255.1 463 QAATYIQRLYRGRQARRL 480
                 69**************95 PP

  == domain 5  score: 6.1 bits;  conditional E-value: 0.0048
                 HHHHHHHHHHHHHHHHHHH CS
          IQ   1 rkaaikIQaawRGylaRkr 19 
                 r a++ +Qa++R   aR++
  KOO25255.1 485 RNAVTMLQARIRSRAARRQ 503
                 689***************8 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   0.0   1.8e-06    0.0041      12     163 ..    1025    1170 ..    1021    1172 .. 0.66

  Alignments for each domain:
  == domain 1  score: 17.1 bits;  conditional E-value: 1.8e-06
                  CHHHHHHHHHHHHCTS-SCCCC.-SEEEEEETTTTTTS-........-HCHHHCCCCTS--SSS-CCHHHHCCSCCCEEEEEE-STT-SS-TCH... CS
       NACHT   12 GKTtLlqklalawaegklpqga.fklvFflslrelsrsgna.....rsladllfsqlpepaapvsevwavllelperlLlilDglDelvtdlgqkek 102 
                  GK+tL+ +la+++a ++      +  ++++   + ++++ +       ++ +l+ +l + +++    ++ +   ++r Ll++Dg+De   d      
  KOO25255.1 1025 GKSTLMSQLATLAAVRQHMVPIyVHGPLLHARLTNPDRKHIfatswNWIDAYLRIELGQRSETYAMLRQAM--MARRGLLLIDGIDEGGHDSAR--- 1116
                  89999999999998888443323444444444444455544765555555666655555555554444443..5789***********985555... PP

                  ......HHHHHCTTTTT--EEEEEEECCCHHHHCTTSSCE..EEEE--TCCHHHHHHHHCT CS
       NACHT  103 qpvrtlLselirkkllpeasllltvrpralrdleeqleeaivlevegfsesrrkqlvrkyf 163 
                         ++li    +++  +++t+rp +l+ l  + +    + v ++s ++ ++++   f
  KOO25255.1 1117 -----IRRHLIDVVAPQGHLVVVTSRPPKLETLWPKSCLR--ATVTSLSDEQQREIIKSRF 1170
                  .....44556777778**************8844333333..5799999999999886655 PP

>> LRR_1  Leucine Rich Repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.0       2.2   4.8e+03       2      16 ..    1508    1522 ..    1507    1526 .. 0.81
   2 ?   -2.4   0.0       6.3   1.4e+04       1      14 [.    1568    1581 ..    1568    1587 .. 0.84
   3 ?   -1.2   0.0       2.5   5.6e+03       2      12 ..    1670    1680 ..    1669    1691 .. 0.74
   4 ?   -0.5   0.0       1.4   3.1e+03       3      19 ..    1699    1715 ..    1697    1719 .. 0.76
   5 ?   -2.8   0.0         8   1.8e+04       1      13 [.    1753    1765 ..    1753    1772 .. 0.81
   6 ?    3.0   0.0      0.11   2.4e+02       1      18 [.    1873    1890 ..    1873    1895 .. 0.81
   7 ?    0.2   0.0      0.83   1.9e+03       3      12 ..    1902    1911 ..    1901    1920 .. 0.85
   8 ?    4.7   0.0     0.028        64       1      15 [.    1928    1942 ..    1928    1954 .. 0.79
   9 ?    2.9   0.4      0.11   2.5e+02       2      13 ..    1967    1978 ..    1966    2018 .. 0.83
  10 ?   -1.5   0.0         3   6.7e+03       1      14 [.    2027    2040 ..    2027    2047 .. 0.80

  Alignments for each domain:
  == domain 1  score: -1.0 bits;  conditional E-value: 2.2
       LRR_1    2 LrhLdLsnnpllglp 16  
                  L +L+Ls n +++l+
  KOO25255.1 1508 LFTLNLSENDIGDLG 1522
                  558******998775 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 6.3
       LRR_1    1 nLrhLdLsnnpllg 14  
                  +L+ Ld++ n l++
  KOO25255.1 1568 RLTLLDIRTNKLTD 1581
                  5999****999865 PP

  == domain 3  score: -1.2 bits;  conditional E-value: 2.5
       LRR_1    2 LrhLdLsnnpl 12  
                  L++LdL+n +l
  KOO25255.1 1670 LEVLDLTNVNL 1680
                  99***988655 PP

  == domain 4  score: -0.5 bits;  conditional E-value: 1.4
       LRR_1    3 rhLdLsnnpllglppns 19  
                  ++L L n++++  ++ s
  KOO25255.1 1699 KVLRLDNCNFGEGGAGS 1715
                  89*******96665555 PP

  == domain 5  score: -2.8 bits;  conditional E-value: 8
       LRR_1    1 nLrhLdLsnnpll 13  
                  +L++L + +n ++
  KOO25255.1 1753 SLQVLRVDGNGPG 1765
                  69********885 PP

  == domain 6  score: 3.0 bits;  conditional E-value: 0.11
       LRR_1    1 nLrhLdLsnnpllglppn 18  
                  nL h+dL +n+l++ +++
  KOO25255.1 1873 NLIHIDLQSNQLGDNGAA 1890
                  8**********9776655 PP

  == domain 7  score: 0.2 bits;  conditional E-value: 0.83
       LRR_1    3 rhLdLsnnpl 12  
                  ++L++s+n++
  KOO25255.1 1902 ERLNMSHNFI 1911
                  79******98 PP

  == domain 8  score: 4.7 bits;  conditional E-value: 0.028
       LRR_1    1 nLrhLdLsnnpllgl 15  
                  +L++LdLs+n + g+
  KOO25255.1 1928 SLTYLDLSSNEICGI 1942
                  69*********9444 PP

  == domain 9  score: 2.9 bits;  conditional E-value: 0.11
       LRR_1    2 LrhLdLsnnpll 13  
                  Lr+L+Ls+n l+
  KOO25255.1 1967 LRTLNLSSNALS 1978
                  9********884 PP

  == domain 10  score: -1.5 bits;  conditional E-value: 3
       LRR_1    1 nLrhLdLsnnpllg 14  
                  +L+ L L++n+++g
  KOO25255.1 2027 SLKMLELGSNHISG 2040
                  6999******9965 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.2       1.5   3.4e+03      70      91 ..     524     559 ..     496     585 .. 0.64
   2 ?   12.4   0.0   6.2e-05      0.14       6     102 ..    1014    1109 ..    1010    1143 .. 0.74

  Alignments for each domain:
  == domain 1  score: -1.8 bits;  conditional E-value: 1.5
      AAA_22  70 a..............erlsseellealeqalrarav 91 
                 a              +++ ++ l+e+l+ +l+++++
  KOO25255.1 524 ArflselregltctfAEKLLQTLIEKLQTHLHDQST 559
                 233333333444455666667777777777776665 PP

  == domain 2  score: 12.4 bits;  conditional E-value: 6.2e-05
      AAA_22    6 gilvvtGesGtGKTtllrrlleqldeeakaee..erpevvfvtlpsstsskdllrellralglelkaerlsseellealeqalraravielliiDEa 100 
                   i ++++++ +GK+tl+ +l+  +  +++      + ++++  l+++  +k ++    + ++  l  e ++++e +++l+qa+ ar+   ll+iD +
  KOO25255.1 1014 LIALICAPPSAGKSTLMSQLATLAAVRQHMVPiyVHGPLLHARLTNPD-RKHIFATSWNWIDAYLRIELGQRSETYAMLRQAMMARRG--LLLIDGI 1107
                  6899*******************9776665557755555677777777.444444444444444444566799999999999999988..9999998 PP

      AAA_22  101 qh 102 
                  + 
  KOO25255.1 1108 DE 1109
                  86 PP

>> LRR_8  Leucine rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   0.0      0.51   1.1e+03      27      38 ..    1508    1519 ..    1503    1526 .. 0.71
   2 ?    0.2   0.0      0.29   6.4e+02      23      38 ..    1564    1580 ..    1558    1581 .. 0.74
   3 ?   -2.8   0.0       2.5   5.7e+03      16      33 ..    1602    1618 ..    1597    1645 .. 0.71
   4 ?   -1.8   0.2       1.2   2.7e+03       7      14 ..    1674    1681 ..    1667    1708 .. 0.54
   5 ?    0.7   0.1       0.2   4.5e+02       2      19 ..    1725    1742 ..    1719    1763 .. 0.51
   6 ?   11.1   0.9   0.00012      0.26       5      61 .]    1876    1939 ..    1873    1939 .. 0.75
   7 ?   10.6   0.0   0.00017      0.38      19      41 ..    1921    1943 ..    1899    1959 .. 0.60
   8 ?    6.7   0.5    0.0026       5.9      25      60 ..    1965    2004 ..    1951    2005 .. 0.69
   9 ?    2.1   1.9     0.073   1.6e+02      23      40 ..    2024    2041 ..    1994    2047 .. 0.78

  Alignments for each domain:
  == domain 1  score: -0.6 bits;  conditional E-value: 0.51
                  --EEE--SS--- CS
       LRR_8   27 LkvLdLsnNllt 38  
                  L +L+Ls+N + 
  KOO25255.1 1508 LFTLNLSENDIG 1519
                  556777777665 PP

  == domain 2  score: 0.2 bits;  conditional E-value: 0.29
                  T.-TT--EEE--SS--- CS
       LRR_8   23 g.lsnLkvLdLsnNllt 38  
                  g +s+L+ Ld++ N+lt
  KOO25255.1 1564 GqVSRLTLLDIRTNKLT 1580
                  55788888888888887 PP

  == domain 3  score: -2.8 bits;  conditional E-value: 2.5
                  E-TTSSTT-TT--EEE-- CS
       LRR_8   16 lddeaFkglsnLkvLdLs 33  
                  l+ eaF  l+ +k+L+Ls
  KOO25255.1 1602 LRCEAFD-LHDVKTLSLS 1618
                  5566777.8899999988 PP

  == domain 4  score: -1.8 bits;  conditional E-value: 1.2
                  E-TTS--S CS
       LRR_8    7 dLsnNrlt 14  
                  dL+n +l 
  KOO25255.1 1674 DLTNVNLD 1681
                  33333332 PP

  == domain 5  score: 0.7 bits;  conditional E-value: 0.2
                  T-SEEE-TTS--SEE-TT CS
       LRR_8    2 nLtsLdLsnNrltsldde 19  
                  +L +L++ nN++++++ +
  KOO25255.1 1725 SLVELSVANNHIHEVGVK 1742
                  445555555555554433 PP

  == domain 6  score: 11.1 bits;  conditional E-value: 0.00012
                  EEE-TTS--SEE-TTSSTT...-TT--EEE--SS---G..GG..GGGGTT--S-.EEE--SS-- CS
       LRR_8    5 sLdLsnNrltslddeaFkg...lsnLkvLdLsnNlltt..ls..pgafsgLpsLrsLdLsgNrL 61  
                   +dL++N+l + +  +  +    s+++ L++s+N +++  +s  + a+ g  sL++LdLs+N +
  KOO25255.1 1876 HIDLQSNQLGDNGAAWLAHglvGSAVERLNMSHNFIRVegMSavASALKGNVSLTYLDLSSNEI 1939
                  6778888888888888877644489999******888644441156899************986 PP

  == domain 7  score: 10.6 bits;  conditional E-value: 0.00017
                  TSSTT-TT--EEE--SS---GGG CS
       LRR_8   19 eaFkglsnLkvLdLsnNllttls 41  
                  +a kg+ +L++LdLs+N++  + 
  KOO25255.1 1921 SALKGNVSLTYLDLSSNEICGIA 1943
                  45566666666666666666655 PP

  == domain 8  score: 6.7 bits;  conditional E-value: 0.0026
                  TT--EEE--SS---GGGGGGGTT-....-S-.EEE--SS- CS
       LRR_8   25 snLkvLdLsnNllttlspgafsgL....psLrsLdLsgNr 60  
                  ++L++L+Ls+N l++  ++a++      ++Lr L L +N+
  KOO25255.1 1965 TALRTLNLSSNALSSAGAKALVPVvrngKALRDLMLVDNN 2004
                  5799999999999998888877552222356666666665 PP

  == domain 9  score: 2.1 bits;  conditional E-value: 0.073
                  T-TT--EEE--SS---GG CS
       LRR_8   23 glsnLkvLdLsnNllttl 40  
                  +  +Lk+L+L++N ++ +
  KOO25255.1 2024 HSDSLKMLELGSNHISGV 2041
                  557899999999988776 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   7.9e-05      0.18       2     104 ..    1017    1139 ..    1017    1142 .. 0.86

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 7.9e-05
      AAA_18    2 lltGtpGvGKttlakeLskrlgf..............gvnlrdvakenglllevdpealdeskrldedkldklldaleenssaleegknlvidghla 84  
                  l++ +p +GK+tl   L+ + ++              + +l+   +++   +++++   d ++r++ +++ +    l+++   ++  + l+idg+ +
  KOO25255.1 1017 LICAPPSAGKSTLMSQLATLAAVrqhmvpiyvhgpllHARLTNPDRKHIFATSWNWI--DAYLRIELGQRSETYAMLRQAM--MARRGLLLIDGIDE 1109
                  5899*************8876667888898999998899999999999999999999..********************85..8999999******* PP

      AAA_18   85 eleseaakdikk..........vvLtaspe 104 
                     + a+++++           vv+t +p 
  KOO25255.1 1110 GGHDSARIRRHLidvvapqghlVVVTSRPP 1139
                  *****9999999777777777777776665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (2112 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1743  (0.0972168); expected 358.6 (0.02)
Passed bias filter:                      556  (0.0310112); expected 358.6 (0.02)
Passed Vit filter:                        54  (0.00301188); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 1.27u 0.34s 00:00:01.61 Elapsed: 00:00:00.54
# Mc/sec: 11737.58
//
Query:       KOO25256.1  [L=439]
Description: o-glucosyltransferase rumi-like protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.2e-38  133.1   0.0    1.3e-36  126.4   0.0    2.0  1  Glyco_transf_90  Glycosyl transferase family 90
     0.0049   17.2   0.0     0.0091   16.4   0.0    1.4  1  Glyco_trans_1_2  Glycosyl transferases group 1


Domain annotation for each model (and alignments):
>> Glyco_transf_90  Glycosyl transferase family 90
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  126.4   0.0   1.4e-40   1.3e-36      39     371 ..       4     373 ..       2     379 .. 0.82

  Alignments for each domain:
  == domain 1  score: 126.4 bits;  conditional E-value: 1.4e-40
  Glyco_transf_90  39 frlviingrvyvekykksvqtrdvftiwgilqLlrky..pgklpDlelmfncdDrPvvkkkdyrgkea........................ap 106
                      +r ++i g++y+  y++++  r  +  + +l Ll ++   ++lpD++l++   D P +k+  +++  +                         p
       KOO25256.1   4 LRAQVIGGHLYITDYRAIFYDR-YYAPSRVLPLLETLrrHPNLPDVDLVVAAVDEPRIKTFVTPKYWSrlcaaypgtarpkaagatrrpdadLP 96 
                      5889******************.9******999865522589****************975444322223333444555677788888888889 PP

  Glyco_transf_90 107 pPlfsycgdeetlDivfPdwsfw.gwpevnik..rwslllkelkegnkkvkweerepyaywkGnpsvae.tReeLlkcnrskkelvdarltkq. 195
                      pPlfs   ++++lD+ + d+sf    ++ +++  +w+ l  ++ ++++ v+we++   a + Gn  ++  +R  L+  ++ ++ lv+  ++   
       KOO25256.1  97 PPLFSSTISRHHLDLPWLDFSFFmPQKDHKLRtpPWKILHPQMLAQSAAVRWEDKIELAMHTGNVGSPFrKRLALVAGSHPDTMLVNELFIGDh 190
                      **********************9766666555338******************************99984666777777776666665555449 PP

  Glyco_transf_90 196 ............dekkeskegvkessledqckhkYkiyieGvaasvsekyilacdslvllvkp..eyydffsreLkplehYvPikskdklrdlk 275
                                  ++k   +++   + +++qc++kY ++     ++ ++ky+l+c+s+v++v++  ++++f+ ++L p +hYv + +     d+ 
       KOO25256.1 191 nkirrtchelglERKGGFQQHLCYMTFQQQCRYKYLLNSASIGYANKFKYLLLCGSVVIYVQDgmTHKEFYEHGLLPGVHYVTVPT---AADVP 281
                      999*9999666544445555555689***********************************9744689****************99...67778 PP

  Glyco_transf_90 276 eavdwgnahdekaqeiaeegseFireeLkmddvydYmfhLlteYakllkykptvpkgavevcaeslacpaeglerkfmeeslvk...spsdksp 366
                        v+ ++ +d+ a+++a++g+  +   L   +v+++m +Ll+ Y+k +++ p+  kgav++  e      ++l+r++  e+       ++d+s+
       KOO25256.1 282 AMVERLRRNDSYARAVAQAGRARL-ATLDIAEVTKFMAELLRGYSKRQRFTPRAGKGAVRIDCE------DDLWRHYARETWFArhyLTEDNST 368
                      888889**************9986.89**********************************988......677777777764431114667778 PP

  Glyco_transf_90 367 CelPp 371
                      C  Pp
       KOO25256.1 369 CVHPP 373
                      88766 PP

>> Glyco_trans_1_2  Glycosyl transferases group 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   0.0     1e-06    0.0091      19      80 ..     242     307 ..     225     319 .. 0.80

  Alignments for each domain:
  == domain 1  score: 16.4 bits;  conditional E-value: 1e-06
  Glyco_trans_1_2  19 aacGafaltdda.egleelftpgk....evilfedleelaekiryllanpeerraiaeaarervlae 80 
                      + cG+++++ +    + e+++ g     + +++ + +++ + +++l +n+  +ra+a+a+r+r la 
       KOO25256.1 242 LLCGSVVIYVQDgMTHKEFYEHGLlpgvHYVTVPTAADVPAMVERLRRNDSYARAVAQAGRAR-LAT 307
                      6799999988668555666655444444**********************************9.655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (439 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       266  (0.0148363); expected 358.6 (0.02)
Passed bias filter:                      239  (0.0133304); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.50u 0.26s 00:00:00.76 Elapsed: 00:00:00.43
# Mc/sec: 3100.54
//
Query:       KOO25257.1  [L=321]
Description: hypothetical protein Ctob_000558 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
     0.0012   18.9   0.0     0.0024   17.9   0.0    1.6  1  P_C10     Protein C10
  ------ inclusion threshold ------
      0.017   14.5   0.1      0.017   14.5   0.1    1.8  3  VWA_CoxE  VWA domain containing CoxE-like protein


Domain annotation for each model (and alignments):
>> P_C10  Protein C10
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.9   0.0   2.7e-07    0.0024       2      94 ..      17     115 ..      16     123 .. 0.74

  Alignments for each domain:
  == domain 1  score: 17.9 bits;  conditional E-value: 2.7e-07
       P_C10   2 tkeqakaaleevlealeqpenaakleeakesagnd.....mlkvmqlvlPvvvqiqmevikkyGFaedreGv..vkfaqlvrelekedkevarlaselr 93 
                 ++eq    l++ l++  +pe  a l+e ++s +          +  ++ P++ ++q++v+ kyG +++  Gv  +kfa + r +++  +e++ la+e r
  KOO25257.1  17 SAEQCTLLLRDLLRKYAEPEFRAMLDETQRSFKGLgesglSEPIWAHLAPILLRVQAPVLAKYGLPPSPTGVelMKFA-IHRRIAEGATELQPLANEAR 114
                 5677777888888888888888888877776654333453334678999*********************97547776.44566778888888888777 PP

       P_C10  94 s 94 
                  
  KOO25257.1 115 R 115
                 6 PP

>> VWA_CoxE  VWA domain containing CoxE-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.7   0.0      0.71   6.3e+03     148     177 ..      16      45 ..      13      47 .. 0.74
   2 ?   14.5   0.1   1.9e-06     0.017     166     215 ..      99     148 ..      95     155 .. 0.90
   3 ?   -2.9   0.1      0.39   3.5e+03     194     218 ..     209     233 ..     196     237 .. 0.71

  Alignments for each domain:
  == domain 1  score: -3.7 bits;  conditional E-value: 0.71
    VWA_CoxE 148 LsrravvvlvsDglergdreellaelarlv 177
                 Ls + + +l+ D+l++++ +e  a l++ +
  KOO25257.1  16 LSAEQCTLLLRDLLRKYAEPEFRAMLDETQ 45 
                 666777889999999998888888777765 PP

  == domain 2  score: 14.5 bits;  conditional E-value: 1.9e-06
    VWA_CoxE 166 reellaelarlvrrarrlvwlnplsdagtpgydpearalrailphvdelr 215
                 ++e ++el+ l + arr+++l pl++++ ++++   ++++ i+ h+d+++
  KOO25257.1  99 IAEGATELQPLANEARRVLGLQPLPNTRMQRVEDLLAQMAEITSHADAIS 148
                 5677899****************************99********99976 PP

  == domain 3  score: -2.9 bits;  conditional E-value: 0.39
    VWA_CoxE 194 tpgydpearalrailphvdelrple 218
                  p+  ++  a++ ++ +v++lr++ 
  KOO25257.1 209 SPSLASCLVAMATAGLPVAALRSVA 233
                 5566666677888888888888775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (321 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       432  (0.024095); expected 358.6 (0.02)
Passed bias filter:                      367  (0.0204696); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.46u 0.23s 00:00:00.69 Elapsed: 00:00:00.40
# Mc/sec: 2382.38
//
Query:       KOO25258.1  [L=1064]
Description: hypothetical protein Ctob_000559 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
      9e-09   35.3   4.1    1.9e-08   34.2   4.1    1.6  1  WW              WW domain
    3.9e-07   30.7   0.0    1.4e-06   28.9   0.0    2.0  1  TIR_2           TIR domain
    2.4e-05   24.3  24.2        5.2    6.9   0.1   10.4 11  Ribosomal_L13e  Ribosomal protein L13e
     0.0002   21.4   0.0         22    5.3   0.0    7.5 12  MerR_1          MerR HTH family regulatory protein
     0.0082   16.2   2.7         21    5.3   0.0    6.0  5  RPAP1_C         RPAP1-like, C-terminal
  ------ inclusion threshold ------
       0.53   10.1  11.3         40    4.1   0.0    8.6  8  SinI            Anti-repressor SinI
        2.4    8.4   4.1         90    3.4   0.0    4.3  5  DUF2774         Protein of unknown function (DUF2774)
        8.4    6.3  10.7         25    4.8   0.6    5.2  5  MOSC_N          MOSC N-terminal beta barrel domain


Domain annotation for each model (and alignments):
>> WW  WW domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.2   4.1   8.6e-12   1.9e-08       1      31 []     335     365 ..     335     365 .. 0.98

  Alignments for each domain:
  == domain 1  score: 34.2 bits;  conditional E-value: 8.6e-12
                 X-TTEEEEE-TTTT-EEEEETTT--EESS-- CS
          WW   1 LPpGWeeqwdpdsGrvYYyNheTgetqWekP 31 
                 LP GW  ++dp+sG++YYy + T+etqWe P
  KOO25258.1 335 LPQGWGSVTDPTSGKTYYYKTATRETQWEFP 365
                 8****************************98 PP

>> TIR_2  TIR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.9   0.0   6.4e-10   1.4e-06      13     111 ..      68     167 ..      61     174 .. 0.80

  Alignments for each domain:
  == domain 1  score: 28.9 bits;  conditional E-value: 6.4e-10
       TIR_2  13 aeklaeaLeaagirvwldrwdlkpgedweeeieeaiess......dvvlvvlspaylesewcreeleaaleaaeegkkr.lipvllepekpplaslqyi 104
                 a+ + + L ++g++++    +++pg dwe+++ +   +       +v++vvl+ a  +s+ c +e+++a+e    +k   l+pv++e++ p  ++ q+ 
  KOO25258.1  68 AKGMSDFLHERGLQCFSGL-QVPPGVDWETFMLRLTGENgkrekpKVLIVVLTAALYKSRPCLKEISTAIE----NK-IaLLPVRFEDKLP-AKEDQWT 159
                 6678899********8555.89**********77655434444459*********999************7....44.45*******6444.5999999 PP

       TIR_2 105 dlskk.de 111
                 +l ++ +e
  KOO25258.1 160 NLDDQeWE 167
                 99966666 PP

>> Ribosomal_L13e  Ribosomal protein L13e
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.7   0.0      0.09     2e+02      67      87 ..     567     587 ..     559     592 .. 0.87
   2 ?    1.4   0.0      0.11   2.5e+02      67      87 ..     593     613 ..     588     613 .. 0.88
   3 !    6.9   0.1    0.0023       5.2      67      89 ..     613     635 ..     609     639 .. 0.91
   4 !    6.4   0.0    0.0032       7.3      68     106 ..     640     678 ..     636     738 .. 0.77
   5 ?    2.6   0.1     0.048   1.1e+02      67      87 ..     747     767 ..     740     771 .. 0.89
   6 ?    2.4   0.1     0.056   1.3e+02      66      87 ..     766     787 ..     758     794 .. 0.84
   7 ?    3.6   0.1     0.024        54      66      87 ..     814     835 ..     798     838 .. 0.68
   8 ?    1.2   0.0      0.13   2.8e+02      66      87 ..     854     875 ..     840     888 .. 0.57
   9 !    5.1   0.2    0.0085        19      67      90 ..     895     918 ..     891     927 .. 0.81
  10 ?   -1.2   0.0      0.68   1.5e+03      67      87 ..     947     967 ..     921     978 .. 0.66
  11 ?   -1.3   0.0      0.77   1.7e+03      66      79 ..     988    1001 ..     980    1016 .. 0.73

  Alignments for each domain:
  == domain 1  score: 1.7 bits;  conditional E-value: 0.09
  Ribosomal_L13e  67 GFtleElkaagiskklArtiG 87 
                     G+t+e++k ag +++ A+  G
      KOO25258.1 567 GYTVEDVKRAGYTAREAKAAG 587
                     99**********999999888 PP

  == domain 2  score: 1.4 bits;  conditional E-value: 0.11
  Ribosomal_L13e  67 GFtleElkaagiskklArtiG 87 
                     G+  +E+kaag++ + A+  G
      KOO25258.1 593 GYMCAEVKAAGLTSAEAKRAG 613
                     8999***********998765 PP

  == domain 3  score: 6.9 bits;  conditional E-value: 0.0023
  Ribosomal_L13e  67 GFtleElkaagiskklArtiGIa 89 
                     G+tleE+++ag +++ A+t G  
      KOO25258.1 613 GYTLEEVQQAGYTAREAKTAGFE 635
                     9******************9975 PP

  == domain 4  score: 6.4 bits;  conditional E-value: 0.0032
  Ribosomal_L13e  68 FtleElkaagiskklArtiGIavDhRrknkseeslkaNv 106
                     +t +E+kaag++ + A++ G ++ + ++ +  e+lk+  
      KOO25258.1 640 YTCAEVKAAGLTCAEAKSAGYTLEEVKRANYVEGLKEAG 678
                     799******************999988888888887655 PP

  == domain 5  score: 2.6 bits;  conditional E-value: 0.048
  Ribosomal_L13e  67 GFtleElkaagiskklArtiG 87 
                     GFt ++ k+ag++ k Ar  G
      KOO25258.1 747 GFTCKDAKEAGFTCKDARAAG 767
                     9****************9988 PP

  == domain 6  score: 2.4 bits;  conditional E-value: 0.056
  Ribosomal_L13e  66 rGFtleElkaagiskklArtiG 87 
                      GFt ++ k+ag++ k A+  G
      KOO25258.1 766 AGFTCKDAKEAGFTCKDAKAAG 787
                     5999999999999999998877 PP

  == domain 7  score: 3.6 bits;  conditional E-value: 0.024
  Ribosomal_L13e  66 rGFtleElkaagiskklArtiG 87 
                      GFt ++ k+ag++ k A+  G
      KOO25258.1 814 AGFTCKDAKEAGFTCKNAKEAG 835
                     5777777777777777777665 PP

  == domain 8  score: 1.2 bits;  conditional E-value: 0.13
  Ribosomal_L13e  66 rGFtleElkaagiskklArtiG 87 
                      GFt ++ kaa ++ k A+  G
      KOO25258.1 854 AGFTCKDAKAAWFTCKDAKEAG 875
                     3555555555555555555555 PP

  == domain 9  score: 5.1 bits;  conditional E-value: 0.0085
  Ribosomal_L13e  67 GFtleElkaagiskklArtiGIav 90 
                     GFt eE + ag++ k Ar  G + 
      KOO25258.1 895 GFTCEEARRAGFTCKDARAAGFTC 918
                     999999999999999999988754 PP

  == domain 10  score: -1.2 bits;  conditional E-value: 0.68
  Ribosomal_L13e  67 GFtleElkaagiskklArtiG 87 
                     GFt  + k+ag++   Ar  G
      KOO25258.1 947 GFTCWDAKEAGFDCWDARRAG 967
                     666666666666655555555 PP

  == domain 11  score: -1.3 bits;  conditional E-value: 0.77
  Ribosomal_L13e   66 rGFtleElkaagis 79  
                       GFt ++ k+ag+ 
      KOO25258.1  988 AGFTCKDAKEAGLL 1001
                      48888888888874 PP

>> MerR_1  MerR HTH family regulatory protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.0       3.3   7.4e+03      53      63 ..     564     574 ..     550     576 .. 0.60
   2 ?   -2.2   0.0         2   4.5e+03      53      64 ..     610     621 ..     607     622 .. 0.81
   3 !    5.3   0.0    0.0096        22      38      63 ..     660     685 ..     649     687 .. 0.88
   4 ?    1.0   0.0       0.2   4.5e+02      44      64 ..     735     755 ..     721     756 .. 0.84
   5 ?   -2.2   0.0         2   4.6e+03      55      64 ..     766     775 ..     759     785 .. 0.57
   6 ?   -3.2   0.0       4.1   9.2e+03      51      64 ..     790     803 ..     789     804 .. 0.83
   7 ?   -1.7   0.0       1.4   3.2e+03      49      64 ..     808     823 ..     806     826 .. 0.87
   8 ?   -2.3   0.0       2.1   4.8e+03      49      64 ..     818     833 ..     816     834 .. 0.85
   9 ?   -3.4   0.0         5   1.1e+04      50      63 ..     849     862 ..     847     863 .. 0.83
  10 ?   -1.8   0.0       1.5   3.4e+03      49      63 ..     918     932 ..     907     934 .. 0.67
  11 ?    1.7   0.0      0.12   2.7e+02      45      64 ..     978     997 ..     971    1000 .. 0.88
  12 ?   -0.5   0.0      0.58   1.3e+03      46      64 ..    1001    1019 ..     998    1020 .. 0.88

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 3.3
                 HHTT--GGG-- CS
      MerR_1  53 lkrGltlkgik 63 
                 + +G+t++++k
  KOO25258.1 564 KTAGYTVEDVK 574
                 33566666665 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 2
                 HHTT--GGG--- CS
      MerR_1  53 lkrGltlkgikk 64 
                 + +G+tl+++++
  KOO25258.1 610 KRAGYTLEEVQQ 621
                 558******997 PP

  == domain 3  score: 5.3 bits;  conditional E-value: 0.0096
                 EEHHHHHHHHHHHHHHHTT--GGG-- CS
      MerR_1  38 YtdedierLklikyLlkrGltlkgik 63 
                 Yt e+++r   +  L+++G++l+++ 
  KOO25258.1 660 YTLEEVKRANYVEGLKEAGFQLEAVM 685
                 999*******************9985 PP

  == domain 4  score: 1.0 bits;  conditional E-value: 0.2
                 HHHHHHHHHHHTT--GGG--- CS
      MerR_1  44 erLklikyLlkrGltlkgikk 64 
                  +L ++k  +++G+t+k++k+
  KOO25258.1 735 GMLSTCKDAREAGFTCKDAKE 755
                 578999************997 PP

  == domain 5  score: -2.2 bits;  conditional E-value: 2
                 TT--GGG--- CS
      MerR_1  55 rGltlkgikk 64 
                 +G+t+k++k+
  KOO25258.1 766 AGFTCKDAKE 775
                 5555555554 PP

  == domain 6  score: -3.2 bits;  conditional E-value: 4.1
                 HHHHTT--GGG--- CS
      MerR_1  51 yLlkrGltlkgikk 64 
                 +L+++G+t+k++ +
  KOO25258.1 790 ALKEAGFTCKDATE 803
                 5889*****99865 PP

  == domain 7  score: -1.7 bits;  conditional E-value: 1.4
                 HHHHHHTT--GGG--- CS
      MerR_1  49 ikyLlkrGltlkgikk 64 
                 +k+ +++G+t+k++k+
  KOO25258.1 808 CKNAKEAGFTCKDAKE 823
                 578899*******997 PP

  == domain 8  score: -2.3 bits;  conditional E-value: 2.1
                 HHHHHHTT--GGG--- CS
      MerR_1  49 ikyLlkrGltlkgikk 64 
                 +k  +++G+t+k++k+
  KOO25258.1 818 CKDAKEAGFTCKNAKE 833
                 577899*******997 PP

  == domain 9  score: -3.4 bits;  conditional E-value: 5
                 HHHHHTT--GGG-- CS
      MerR_1  50 kyLlkrGltlkgik 63 
                 k  +++G+t+k++k
  KOO25258.1 849 KDAKEAGFTCKDAK 862
                 77899*****9998 PP

  == domain 10  score: -1.8 bits;  conditional E-value: 1.5
                 HHHHHHTT--GGG-- CS
      MerR_1  49 ikyLlkrGltlkgik 63 
                 +k  +++G+t+k++k
  KOO25258.1 918 CKDAREAGFTCKDAK 932
                 455667777777766 PP

  == domain 11  score: 1.7 bits;  conditional E-value: 0.12
                 HHHHHHHHHHTT--GGG--- CS
      MerR_1  45 rLklikyLlkrGltlkgikk 64 
                 +L ++k+ +++G+t+k++k+
  KOO25258.1 978 MLSTCKEAREAGFTCKDAKE 997
                 68899*************97 PP

  == domain 12  score: -0.5 bits;  conditional E-value: 0.58
                  HHHHHHHHHTT--GGG--- CS
      MerR_1   46 LklikyLlkrGltlkgikk 64  
                  L ++k  +++G+t+k++k+
  KOO25258.1 1001 LSTCKDAREAGFTCKDAKD 1019
                  778999**********996 PP

>> RPAP1_C  RPAP1-like, C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.0   0.1      0.21   4.7e+02      29      40 ..     562     573 ..     542     585 .. 0.77
   2 !    5.3   0.0    0.0093        21      27      41 ..     606     620 ..     601     622 .. 0.87
   3 ?    3.1   0.0     0.047   1.1e+02      29      40 ..     654     665 ..     647     667 .. 0.88
   4 ?   -3.4   0.0       4.8   1.1e+04      32      41 ..     686     695 ..     683     696 .. 0.85
   5 ?   -2.5   0.0       2.6   5.7e+03      19      38 ..     996    1015 ..     976    1017 .. 0.68

  Alignments for each domain:
  == domain 1  score: 1.0 bits;  conditional E-value: 0.21
     RPAP1_C  29 epalaGYTlkEl 40 
                 e+++aGYT++++
  KOO25258.1 562 EAKTAGYTVEDV 573
                 677788887654 PP

  == domain 2  score: 5.3 bits;  conditional E-value: 0.0093
     RPAP1_C  27 gdepalaGYTlkElf 41 
                 + e+++aGYTl+E+ 
  KOO25258.1 606 SAEAKRAGYTLEEVQ 620
                 6799*********86 PP

  == domain 3  score: 3.1 bits;  conditional E-value: 0.047
     RPAP1_C  29 epalaGYTlkEl 40 
                 e++ aGYTl+E+
  KOO25258.1 654 EAKSAGYTLEEV 665
                 7899******96 PP

  == domain 4  score: -3.4 bits;  conditional E-value: 4.8
     RPAP1_C  32 laGYTlkElf 41 
                 +aGY l+E++
  KOO25258.1 686 EAGYVLSEIL 695
                 69******86 PP

  == domain 5  score: -2.5 bits;  conditional E-value: 2.6
     RPAP1_C   19 thrgLhhHgdepalaGYTlk 38  
                  ++ gL +  +++ +aG+T k
  KOO25258.1  996 KEAGLLSTCKDAREAGFTCK 1015
                  44667777777777887766 PP

>> SinI  Anti-repressor SinI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.6   1.5       4.5     1e+04       2       6 ..     163     167 ..     163     168 .. 0.86
   2 ?    4.1   0.0     0.018        40       9      23 ..     531     545 ..     531     546 .. 0.88
   3 ?    0.3   0.0      0.28   6.3e+02      11      23 ..     562     574 ..     561     575 .. 0.91
   4 ?    0.4   0.0      0.26   5.7e+02      11      23 ..     608     620 ..     607     621 .. 0.89
   5 ?    1.9   0.0     0.085   1.9e+02      11      23 ..     654     666 ..     653     667 .. 0.92
   6 ?   -2.0   0.0       1.5   3.3e+03      10      16 ..     751     757 ..     741     765 .. 0.62
   7 ?   -0.8   0.0      0.63   1.4e+03      10      20 ..     983     993 ..     983     997 .. 0.80
   8 ?   -2.6   0.0       2.2   4.9e+03      10      17 ..     993    1000 ..     992    1000 .. 0.90

  Alignments for each domain:
  == domain 1  score: -3.6 bits;  conditional E-value: 4.5
                 HHHHH CS
        SinI   2 DeEWv 6  
                 D+EW+
  KOO25258.1 163 DQEWE 167
                 9***7 PP

  == domain 2  score: 4.1 bits;  conditional E-value: 0.018
                 HHHHHHHT--SHHHH CS
        SinI   9 ikEAkesGlskeEfR 23 
                 +k+A++sGl+ ++ R
  KOO25258.1 531 LKDALDSGLTLKQLR 545
                 589********9976 PP

  == domain 3  score: 0.3 bits;  conditional E-value: 0.28
                 HHHHHT--SHHHH CS
        SinI  11 EAkesGlskeEfR 23 
                 EAk +G ++e+++
  KOO25258.1 562 EAKTAGYTVEDVK 574
                 9***********8 PP

  == domain 4  score: 0.4 bits;  conditional E-value: 0.26
                 HHHHHT--SHHHH CS
        SinI  11 EAkesGlskeEfR 23 
                 EAk +G + eE+ 
  KOO25258.1 608 EAKRAGYTLEEVQ 620
                 9**********95 PP

  == domain 5  score: 1.9 bits;  conditional E-value: 0.085
                 HHHHHT--SHHHH CS
        SinI  11 EAkesGlskeEfR 23 
                 EAk +G + eE++
  KOO25258.1 654 EAKSAGYTLEEVK 666
                 9***********8 PP

  == domain 6  score: -2.0 bits;  conditional E-value: 1.5
                 HHHHHHT CS
        SinI  10 kEAkesG 16 
                 k+Ake+G
  KOO25258.1 751 KDAKEAG 757
                 4566666 PP

  == domain 7  score: -0.8 bits;  conditional E-value: 0.63
                 HHHHHHT--SH CS
        SinI  10 kEAkesGlske 20 
                 kEA+e+G + +
  KOO25258.1 983 KEAREAGFTCK 993
                 8******7755 PP

  == domain 8  score: -2.6 bits;  conditional E-value: 2.2
                  HHHHHHT- CS
        SinI   10 kEAkesGl 17  
                  k+Ake+Gl
  KOO25258.1  993 KDAKEAGL 1000
                  79*****8 PP

>> DUF2774  Protein of unknown function (DUF2774)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.4   0.0      0.04        90      14      48 ..     547     582 ..     540     584 .. 0.89
   2 ?   -2.0   0.1       1.9   4.2e+03      20      40 ..     753     773 ..     743     786 .. 0.50
   3 ?   -3.2   0.0       4.5     1e+04      20      42 ..     811     833 ..     800     834 .. 0.69
   4 ?    3.0   0.0     0.053   1.2e+02      20      43 ..     851     874 ..     845     877 .. 0.92
   5 ?   -2.5   0.0       2.8   6.3e+03      30      43 ..     911     924 ..     898     945 .. 0.57

  Alignments for each domain:
  == domain 1  score: 3.4 bits;  conditional E-value: 0.04
     DUF2774  14 knFveIAkkldirakdvaklwveveear.ekfktrE 48 
                 k+++e  k+++i+ +++  +   ve+ + + + +rE
  KOO25258.1 547 KGYIEGLKAVGITCAEAKTAGYTVEDVKrAGYTARE 582
                 7999999*******************9867788888 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 1.9
     DUF2774  20 Akkldirakdvaklwveveea 40 
                 Ak+ + + kd+  +    ++a
  KOO25258.1 753 AKEAGFTCKDARAAGFTCKDA 773
                 344444444444444444444 PP

  == domain 3  score: -3.2 bits;  conditional E-value: 4.5
     DUF2774  20 Akkldirakdvaklwveveeare 42 
                 Ak+ + + kd+ ++    ++a+e
  KOO25258.1 811 AKEAGFTCKDAKEAGFTCKNAKE 833
                 67777777777777666666665 PP

  == domain 4  score: 3.0 bits;  conditional E-value: 0.053
     DUF2774  20 Akkldirakdvaklwveveearek 43 
                 Ak+ + + kd+  +w   ++a+e+
  KOO25258.1 851 AKEAGFTCKDAKAAWFTCKDAKEA 874
                 8999*****************975 PP

  == domain 5  score: -2.5 bits;  conditional E-value: 2.8
     DUF2774  30 vaklwveveearek 43 
                 +  +    ++are+
  KOO25258.1 911 ARAAGFTCKDAREA 924
                 44444444444432 PP

>> MOSC_N  MOSC N-terminal beta barrel domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.0       1.8     4e+03      50      80 ..     124     154 ..     119     176 .. 0.76
   2 ?    0.5   0.1      0.24   5.3e+02      72     111 ..     749     786 ..     732     793 .. 0.62
   3 ?    4.8   0.6     0.011        25      87     114 ..     840     867 ..     793     869 .. 0.71
   4 ?   -0.8   0.0       0.6   1.4e+03      93     108 ..     876     891 ..     867     927 .. 0.60
   5 ?    2.6   0.1     0.051   1.1e+02      72     108 ..     927     963 ..     916     982 .. 0.72

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 1.8
      MOSC_N  50 rrePrlalirteldeedglLtltapgrkdle 80 
                 + +P l  i+t+++++  lL ++ +++ +++
  KOO25258.1 124 KSRPCLKEISTAIENKIALLPVRFEDKLPAK 154
                 7789999******999999999998776555 PP

  == domain 2  score: 0.5 bits;  conditional E-value: 0.24
      MOSC_N  72 tapgrkdlevslakakasleevsvlelsasgldegdevak 111
                 t++++k++ + ++  +a ++++++++++  g+++ d+ a+
  KOO25258.1 749 TCKDAKEAGFTCK--DARAAGFTCKDAKEAGFTCKDAKAA 786
                 4444555555444..4566667777777777777776555 PP

  == domain 3  score: 4.8 bits;  conditional E-value: 0.011
      MOSC_N  87 kasleevsvlelsasgldegdevakwls 114
                 +a+++++++++++  g+++ d+ a+w++
  KOO25258.1 840 DAKAAGFTCKDAKEAGFTCKDAKAAWFT 867
                 4556667777777777777778899987 PP

  == domain 4  score: -0.8 bits;  conditional E-value: 0.6
      MOSC_N  93 vsvlelsasgldegde 108
                 +++++++  g+d+ d+
  KOO25258.1 876 FDCWDARRAGFDCWDA 891
                 4444444444444443 PP

  == domain 5  score: 2.6 bits;  conditional E-value: 0.051
      MOSC_N  72 tapgrkdlevslakakasleevsvlelsasgldegde 108
                 t++++kd+ +  + ++a+++++++++++  g+d+ d+
  KOO25258.1 927 TCKDAKDAGMLWTCKDAKEAGFTCWDAKEAGFDCWDA 963
                 5666666666666667777777777777777777775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1064 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       621  (0.0346366); expected 358.6 (0.02)
Passed bias filter:                      381  (0.0212505); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                        16  (0.000892409); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.87u 0.29s 00:00:01.15 Elapsed: 00:00:00.45
# Mc/sec: 7083.05
//
Query:       KOO25259.1  [L=304]
Description: metaxin 2 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      2e-23   83.1   0.0    5.1e-23   81.7   0.0    1.7  2  Tom37     Outer mitochondrial membrane transport complex prot
    8.8e-20   70.3   0.0    1.9e-19   69.2   0.0    1.6  1  GST_C_6   Glutathione S-transferase, C-terminal domain
    1.7e-14   54.4   0.0    5.5e-14   52.7   0.0    1.8  2  GST_N_4   Glutathione S-transferase N-terminal domain
    0.00012   22.0   0.1    0.00027   20.9   0.1    1.6  1  GST_C_2   Glutathione S-transferase, C-terminal domain


Domain annotation for each model (and alignments):
>> Tom37  Outer mitochondrial membrane transport complex protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   81.7   0.0   1.1e-26   5.1e-23      15     125 .]      11     122 ..       3     122 .. 0.94
   2 ?   -3.1   0.1       2.1   9.2e+03      65      78 ..     235     248 ..     222     256 .. 0.60

  Alignments for each domain:
  == domain 1  score: 81.7 bits;  conditional E-value: 1.1e-26
       Tom37  15 pfevvessnpslsptgeLPaLkdge...gtwisgfdnIveylrkkseesdldaslsakekadatAlisllesklaplllyslyvnsenyekvTrpaysk 110
                 +f v+ +    +s +geLP+L++++   ++++++ + +++ l +   ++dlda lsa++ka++ A+++l+e++l+ +llys++ ++ ny++v rp++++
  KOO25259.1  11 DFMVESCGRLHASVSGELPMLQTTNvagSRQLAEPHAVCQALVAL--GHDLDARLSAEQKAESLAFTALIEERLHIALLYSWWEEETNYDTVVRPVLGA 107
                 678889999999***********999977888***********99..999************************************************* PP

       Tom37 111 llpfPlnyilplklr 125
                  lp+Pl +++p++lr
  KOO25259.1 108 SLPIPLCFYVPWMLR 122
                 ************987 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 2.1
       Tom37  65 slsakekadatAli 78 
                 + +++++ad +A  
  KOO25259.1 235 EYAEQQAADDAAAA 248
                 44555555555544 PP

>> GST_C_6  Glutathione S-transferase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.2   0.0   4.2e-23   1.9e-19       2      64 .]     145     207 ..     144     207 .. 0.97

  Alignments for each domain:
  == domain 1  score: 69.2 bits;  conditional E-value: 4.2e-23
     GST_C_6   2 kkdleaLselLgdkkyFfGdkPtslDAlvFGhlaqilytplespelrellkeypNLvayceri 64 
                 +++l+aLs +Lg+ ++F Gd PtslDA++F++l  +l  pl+  +lr  ++ + NLv +ceri
  KOO25259.1 145 DAALSALSVRLGNRPFFHGDAPTSLDASAFAYLSAVLRCPLPKDHLRAAMRTHLNLVVFCERI 207
                 689************************************99999******************8 PP

>> GST_N_4  Glutathione S-transferase N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.7   0.0   1.2e-17   5.5e-14      14      99 .]       9      96 ..       6      96 .. 0.92
   2 ?   -2.1   0.0       1.5   6.5e+03      63      93 ..     256     287 ..     224     291 .. 0.61

  Alignments for each domain:
  == domain 1  score: 52.7 bits;  conditional E-value: 1.2e-17
     GST_N_4 14 gipyelepssnemhaspkgklPfielngel...liadsefiieflkekgvdldaelseeqkadaralkalveeklynallyerwldpen 99
                g+++++e ++  +has +g+lP+++  +     ++a+ + + + l++ g+dlda ls+eqka++ a++al+ee+l+ ally +w +++n
  KOO25259.1  9 GVDFMVESCGR-LHASVSGELPMLQTTNVAgsrQLAEPHAVCQALVALGHDLDARLSAEQKAESLAFTALIEERLHIALLYSWWEEETN 96
                789**998887.69**********884444588***************************************************88876 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 1.5
     GST_N_4  63 d.aelseeqkadaralkalveeklynallyer 93 
                   ++ ++eq+   r  ++ v +++  a++y++
  KOO25259.1 256 TgKHRTPEQQRFRRRSRNAVLTTVGAAVAYAL 287
                 34556666555555555555556666776666 PP

>> GST_C_2  Glutathione S-transferase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.9   0.1     6e-08   0.00027       9      45 ..     142     178 ..     127     197 .. 0.89

  Alignments for each domain:
  == domain 1  score: 20.9 bits;  conditional E-value: 6e-08
                 HHCCHCHHHCTTT---SS.CTTCS--HHHHHHHHHHH CS
     GST_C_2   9 eqldaaldaleahLadspflfGdqptlaDialapflv 45 
                 +  daal+al+ +L+ +pf+ Gd pt  D+++++ l 
  KOO25259.1 142 AYGDAALSALSVRLGNRPFFHGDAPTSLDASAFAYLS 178
                 55689****************************9885 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (304 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       610  (0.0340231); expected 358.6 (0.02)
Passed bias filter:                      384  (0.0214178); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.45u 0.26s 00:00:00.71 Elapsed: 00:00:00.42
# Mc/sec: 2166.15
//
Query:       KOO25260.1  [L=607]
Description: transcription elongation factor spt5, partial [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.9e-18   66.1   0.1    3.7e-18   65.2   0.1    1.5  1  Spt5-NGN       Early transcription elongation factor of RNA p
  ------ inclusion threshold ------
      0.025   14.3   0.0      0.084   12.5   0.0    1.9  1  DUF1287        Domain of unknown function (DUF1287)
      0.069   13.1  22.4       0.26   11.3   0.3    5.1  6  KOW            KOW motif
       0.14   11.8   5.8        0.2   11.4   3.6    2.3  2  Myb_CC_LHEQLE  MYB-CC type transfactor, LHEQLE motif


Domain annotation for each model (and alignments):
>> Spt5-NGN  Early transcription elongation factor of RNA pol II, NGN section
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.2   0.1   8.3e-22   3.7e-18       2      84 .]      74     155 ..      73     155 .. 0.95

  Alignments for each domain:
  == domain 1  score: 65.2 bits;  conditional E-value: 8.3e-22
    Spt5-NGN   2 iwavkctagqErevalslmkkilelakken.leIkSvfapdelkGyiyvEAdrkaaveralegipnvrgvvqglvpikEvedll 84 
                 +w +kc+++qE+ ++++lm+k+l+++ + + l+IkS+ ++d +kGyiy+EA ++ +v++a +g+ n++    ++vp++E++d++
  KOO25260.1  74 MWLMKCKPNQEKMLVIQLMQKFLDSMHTDKpLQIKSAACTD-IKGYIYIEAYKELHVREATQGLNNLFYKI-TQVPVNEMTDVM 155
                 8************************9998899*****9986.9************************9985.9********986 PP

>> DUF1287  Domain of unknown function (DUF1287)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   1.9e-05     0.084     102     150 ..     312     361 ..     298     372 .. 0.73

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 1.9e-05
     DUF1287 102 daedeyqpGdivvfkleekleHi.givsdkrekkgvplvihnigagqkee 150
                  ++++++pGdiv +++++ l+Hi g+v   + ++g  +++    +g  +e
  KOO25260.1 312 APKESFAPGDIVKVRENSDLKHIvGVVQSINGSTGAVVIMPTSTDGLFKE 361
                 34558*****************8467777777778887776666655555 PP

>> KOW  KOW motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.0      0.34   1.5e+03      12      25 ..     180     193 ..     179     201 .. 0.79
   2 ?   -2.4   0.0       1.2   5.2e+03       5      17 ..     207     219 ..     206     219 .. 0.74
   3 ?    0.1   0.1       0.2     9e+02       1       7 [.     319     325 ..     319     327 .. 0.88
   4 ?   -1.6   0.2      0.69   3.1e+03      16      31 ..     335     350 ..     335     351 .. 0.79
   5 ?   11.0   4.6   7.1e-05      0.32       2      22 ..     382     403 ..     381     409 .. 0.89
   6 ?   11.3   0.3   5.9e-05      0.26       7      25 ..     524     542 ..     522     547 .. 0.86

  Alignments for each domain:
  == domain 1  score: -0.7 bits;  conditional E-value: 0.34
                 TTTCEEEEEEEETT CS
         KOW  12 hkGktGkVvkvdqh 25 
                 +k++ ++Vv+ d +
  KOO25260.1 180 YKDDLAQVVDLDND 193
                 8999999**99977 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 1.2
                 EEESSSTTTTCEE CS
         KOW   5 VkVvsGphkGktG 17 
                 V+V++G + ++tG
  KOO25260.1 207 VYVTRGLDDDDTG 219
                 99***97666665 PP

  == domain 3  score: 0.1 bits;  conditional E-value: 0.2
                 TTSEEEE CS
         KOW   1 pGdhVkV 7  
                 pGd+VkV
  KOO25260.1 319 PGDIVKV 325
                 8*****9 PP

  == domain 4  score: -1.6 bits;  conditional E-value: 0.69
                 EEEEEEEETTTTEEEE CS
         KOW  16 tGkVvkvdqhkvrVfv 31 
                 +G+V +++  +  V++
  KOO25260.1 335 VGVVQSINGSTGAVVI 350
                 6999999999876665 PP

  == domain 5  score: 11.0 bits;  conditional E-value: 7.1e-05
                 TSEEEESSS.TTTTCEEEEEEE CS
         KOW   2 GdhVkVvsG.phkGktGkVvkv 22 
                 GdhVkVv+G +h G+tG +v+v
  KOO25260.1 382 GDHVKVVGGtRHVGETGLIVRV 403
                 9********55*********99 PP

  == domain 6  score: 11.3 bits;  conditional E-value: 5.9e-05
                 ESSSTTTTCEEEEEEEETT CS
         KOW   7 VvsGphkGktGkVvkvdqh 25 
                 ++ G hkG+ G+V++v + 
  KOO25260.1 524 IIEGAHKGQAGIVKHVFKS 542
                 89**************986 PP

>> Myb_CC_LHEQLE  MYB-CC type transfactor, LHEQLE motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   3.6   4.6e-05       0.2      10      44 ..      16      52 ..      14      55 .. 0.81
   2 ?   -1.1   0.0      0.36   1.6e+03      27      40 ..     155     168 ..     150     168 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 4.6e-05
  Myb_CC_LHEQLE 10 QmevQkrLhEQLEvQrhLqlRiE..aqgkyLqkiLek 44
                   Q +vQ+rL+E  ++Q +++ R E    ++y ++ Le+
     KOO25260.1 16 QFDVQRRLEEDAKLQEQVRERFEgeNAQRYTREALEE 52
                   99*******************9722457777777776 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 0.36
  Myb_CC_LHEQLE  27 LqlRiEaqgkyLqk 40 
                    +++R++a++k Lq+
     KOO25260.1 155 MRVRVDAKKKPLQR 168
                    78999999999985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (607 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       723  (0.0403257); expected 358.6 (0.02)
Passed bias filter:                      491  (0.0273858); expected 358.6 (0.02)
Passed Vit filter:                        52  (0.00290033); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.59u 0.27s 00:00:00.86 Elapsed: 00:00:00.43
# Mc/sec: 4273.03
//
Query:       KOO25261.1  [L=813]
Description: n-acetyltransferase 10 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.2e-58  196.8   0.0    5.9e-58  196.3   0.0    1.2  1  tRNA_bind_2      Possible tRNA binding domain
    1.7e-33  114.4   0.0      4e-33  113.2   0.0    1.7  1  DUF1726          Domain of unknown function (DUF1726)
    3.7e-32  111.6   0.0    1.4e-31  109.7   0.0    1.9  2  Helicase_RecD    Helicase
      2e-21   76.5   2.1    3.5e-19   69.1   0.5    2.4  2  GNAT_acetyltr_2  GNAT acetyltransferase 2
  ------ inclusion threshold ------
      0.089   12.4   0.0       0.23   11.1   0.0    1.7  1  NUC173           NUC173 domain
       0.15   11.8   0.0       0.31   10.8   0.0    1.5  1  DEAD             DEAD/DEAH box helicase


Domain annotation for each model (and alignments):
>> tRNA_bind_2  Possible tRNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  196.3   0.0     2e-61   5.9e-58       1     234 [.     531     756 ..     531     757 .. 0.90

  Alignments for each domain:
  == domain 1  score: 196.3 bits;  conditional E-value: 2e-61
                  HHHHHHHHHHHHHHHHHHHHSS------S--------------------------------HHHHHHHHHHHHS---HHHHHSSSSHHHHHHHH--SS CS
  tRNA_bind_2   1 WLgafakdFrkRflsLLsyqFrkfeavlaLsilesknkgeklekseekkeltkeeldellspfDlkRLesYannllDYhvilDllptlaklyFsgrlk 98 
                  W +++a dFr+R++sLL+   +k+   laLs+l    + ++   + ++++ t e+l+ ll ++D++RL sYa+nl+D+h+++Dl+p la+l F++rl+
   KOO25261.1 531 WARQYAGDFRRRLTSLLGLAMSKMGVDLALSLLAPDLQPAE---DGQPAAPTAEQLQFLLGSYDMRRLHSYAHNLVDHHLVMDLVPLLASLRFTNRLR 625
                  999********************************997654...45789999********************************************** PP

                  TTTS-SSSSSSHHHHHHTT---HHHHHHHHT--SSHHHHHHHHHHHHHHHHH-HHHHHHHHH-XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
  tRNA_bind_2  99 eevkLsavqsaiLlaiGLQrksvddlekeLnlpsnQvlalFvkiirkvskalreilekaieeelpkekeeekaaeaeeeeakekelkpleesleeeLe 196
                    + Ls vq+aiLl++GLQ+k++++l++eL+lp++Q+lalF+k++r+++++lr+++e+a  ++lp+++ +         +a+ ++l+p++++l++e++
   KOO25261.1 626 --TPLSHVQAAILLGLGLQHKTLEELAAELGLPASQLLALFNKAVRRMVSTLRAVEEAAEGASLPDAALA---------DAAGSALRPMKTKLSDEMD 712
                  ..****************************************************************9975.........567899************* PP

                  XXXXXX....XXXXXXXXXXXXXX..XXXXXXXXXXXXXXXXXX CS
  tRNA_bind_2 197 eaakev....eeklkekqrelids..ldlekYaikgdeeeweka 234
                   +a+      ++++ ++q + +++  ++l++Yaikg+e+ew++a
   KOO25261.1 713 AGAAASlralQAEQAQRQAAWLKDegKELSRYAIKGSEAEWAAA 756
                  9998762222444444455556652369*************987 PP

>> DUF1726  Domain of unknown function (DUF1726)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  113.2   0.0   1.3e-36     4e-33       1      93 []     106     200 ..     106     200 .. 0.98

  Alignments for each domain:
  == domain 1  score: 113.2 bits;  conditional E-value: 1.3e-36
     DUF1726   1 ykesekvLGqtydllvldlfealtPnalgrlvetVrGGGliilllppleelkqlyt...dfhkklvveplteevkkrfnkrfirklkehegilivd 93 
                 yke+++vLG+t+++lvl++fea+tPn+l+r+vetV+GGG+++lll+++++lkqly+   d+h+++++e+++ ++++rfn+rfi +l ++  +l++d
  KOO25261.1 106 YKETQRVLGNTFGMLVLQDFEAVTPNVLARTVETVEGGGIVVLLLKSMSSLKQLYAmsmDVHARYRTEAHS-DIQPRFNERFILSLASCAACLVLD 200
                 9*********************************************************************6.********************9987 PP

>> Helicase_RecD  Helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.0      0.93   2.8e+03     117     162 ..     131     172 ..     120     178 .. 0.73
   2 !  109.7   0.0   4.8e-35   1.4e-31       2     109 ..     296     414 ..     295     422 .. 0.87

  Alignments for each domain:
  == domain 1  score: -2.0 bits;  conditional E-value: 0.93
  Helicase_RecD 117 vvlatTvhGYEGtGrgfslkflkqlkkekkrelreleleepiRyae 162
                     vla Tv+  EG G  + + +lk +++   ++l  ++++ + Ry++
     KOO25261.1 131 NVLARTVETVEGGG--IVVLLLKSMSS-L-KQLYAMSMDVHARYRT 172
                    57899999999998..66666777653.3.3799999999999976 PP

  == domain 2  score: 109.7 bits;  conditional E-value: 4.8e-35
  Helicase_RecD   2 ltAdRGRGKSaalGlalaaliaegksnilvtapskenvktlfeflakglealglke..........eekkkkaekaelrvr.....kqrieyiapd 82 
                    ltA+RGRGKSaalGl laa+ia g++ni+vt+ps+en++tlfef+ kg++al++ke          +    + +ka +r++     +q+i+yi+p+
     KOO25261.1 296 LTAARGRGKSAALGLSLAAAIAYGYANIFVTSPSPENLRTLFEFVLKGFDALEYKEhidftvvestN---PELKKAVVRINvfhqhRQTIQYIEPT 388
                    8*******************************************************99999995552...3444444444455666********** PP

  Helicase_RecD  83 ellklkeqadllvvDEAAaiplpllkk 109
                    +++ l+ qa+llvvDEAAaip+p   +
     KOO25261.1 389 DAQLLS-QAELLVVDEAAAIPIPQAAS 414
                    ****98.8**************98665 PP

>> GNAT_acetyltr_2  GNAT acetyltransferase 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.1   0.5   1.2e-22   3.5e-19       1      51 [.     451     502 ..     451     504 .. 0.96
   2 !    9.4   0.1   0.00021      0.62     209     226 ..     501     518 ..     499     519 .. 0.90

  Alignments for each domain:
  == domain 1  score: 69.1 bits;  conditional E-value: 1.2e-22
  GNAT_acetyltr_2   1 klvallvssHYknsPnDLqllsDaPahklfvLlapkkek.kklpevlcvvqv 51 
                      ++val+v+sHYkn+PnDLql+sDaPah+lf+Ll+p++ + ++lp+vl+vvq 
       KOO25261.1 451 RMVALFVASHYKNTPNDLQLMSDAPAHQLFALLGPVDVNaTRLPDVLAVVQT 502
                      699*********************************99989*********95 PP

  == domain 2  score: 9.4 bits;  conditional E-value: 0.00021
  GNAT_acetyltr_2 209 qtaneltGEhsaimlrsl 226
                      qt ne+tGEh+ai++r+l
       KOO25261.1 501 QTVNETTGEHTAIVVRAL 518
                      899************987 PP

>> NUC173  NUC173 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   7.8e-05      0.23      19      91 ..     494     572 ..     488     603 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 7.8e-05
      NUC173  19 kevlevlsalfeklgkrsspl......lkkilktlgelreseefelkkeadevigaairamGpevvLevlPLnleeeee 91 
                 ++vl v++++ e+ g++ + +       ++ + + ge+  +   ++++ +++ +g a++ mG +  L++l  +l+++e+
  KOO25261.1 494 PDVLAVVQTVNETTGEHTAIVvralggADEGVASQGEWARQYAGDFRRRLTSLLGLAMSKMGVDLALSLLAPDLQPAED 572
                 689999999999999999544556677888899999999999889*************************988886533 PP

>> DEAD  DEAD/DEAH box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0    0.0001      0.31      15     130 ..     292     404 ..     271     408 .. 0.75

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.0001
                 CEEEEEESTTSSHHHHHHHHHHHHHHHSTTSTS-EEEEEESSHHHHHHHHHHHHHHTTTSTSEEEEEET.TSSHHHHHHHHHTTCSEEEEEHHHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD  15 gdvlvaaeTGsGKTlaflipvlqivyetkgktgpkalivePtreLaeqtlnnlkkfkkyidlrvlliig.gvaardqlskldngvdivvgtpgrlddll 112
                   v + a+ G GK++a  + + +++          +++ +P+ e  +  ++ + k ++ ++++++  ++  ++++ +l+k   +++++    + ++ + 
  KOO25261.1 292 TTVALTAARGRGKSAALGLSLAAAI----AYGYANIFVTSPSPENLRTLFEFVLKGFDALEYKEHIDFTvVESTNPELKKAVVRINVFHQHRQTIQYIE 386
                 46789999**************999....568889*******999999999999988888888874433244556666666556776666666666655 PP

                 HCTSSHCTTEEEEEEETH CS
                 xxxxxxxxxxxxxxxxxx RF
        DEAD 113 stgklnlsqvrflVlDEa 130
                  t    lsq ++lV+DEa
  KOO25261.1 387 PTDAQLLSQAELLVVDEA 404
                 566656***********9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (813 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       674  (0.0375927); expected 358.6 (0.02)
Passed bias filter:                      520  (0.0290033); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.65u 0.29s 00:00:00.94 Elapsed: 00:00:00.42
# Mc/sec: 5777.73
//
Query:       KOO25262.1  [L=324]
Description: hypothetical protein Ctob_012290 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.13   12.0   0.0        0.2   11.5   0.0    1.2  1  DUF1572   Protein of unknown function (DUF1572)


Domain annotation for each model (and alignments):
>> DUF1572  Protein of unknown function (DUF1572)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   1.1e-05       0.2     131     161 ..     203     233 ..     198     235 .. 0.91

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 1.1e-05
     DUF1572 131 qlahyayhvgqlvllakllkeeewkslsipk 161
                 ++ h+  h gq++++  ++++ +w  l +p 
  KOO25262.1 203 AMPHAMGHHGQIMFVHEMVQSGDWTPLLLPA 233
                 578**********************998885 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (324 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       373  (0.0208043); expected 358.6 (0.02)
Passed bias filter:                      353  (0.0196888); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.25s 00:00:00.70 Elapsed: 00:00:00.41
# Mc/sec: 2374.41
//
Query:       KOO25263.1  [L=179]
Description: transmembrane protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      2e-20   73.0   3.5    5.5e-20   71.6   3.5    1.6  1  UPF0220   Uncharacterised protein family (UPF0220)
  ------ inclusion threshold ------
       0.11   11.8   0.8       0.17   11.2   0.8    1.2  1  TssN      Type VI secretion system, TssN


Domain annotation for each model (and alignments):
>> UPF0220  Uncharacterised protein family (UPF0220)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   71.6   3.5   6.1e-24   5.5e-20      17     164 ..      14     176 ..       6     177 .. 0.89

  Alignments for each domain:
  == domain 1  score: 71.6 bits;  conditional E-value: 6.1e-24
     UPF0220  17 nsakrravgvylaGaLfalgfwlliDaaivskkanasd.......................vhvtfvdwipgicstlgmlivnsieksrlsgdslgqsg 92 
                   ak  ++g++++G++ a+g++++iD  +        +                          + ++w pgi+st+g++ +n i+ + +++d  +  g
  KOO25263.1  14 AAAKCASLGSLASGIIVAVGWYIFIDGLVQAAADC-VHwgnhfnpngctnasrgadylappGLQSGAYWTPGILSTVGLIALNIINWDAVTEDFDS--G 109
                 56788899******************999877663.33578999****************977789************************998733..5 PP

     UPF0220  93 ssvawkarvvLflGfallagglagslvvlilkYvv.kdytefptlgmGvanvlqNllimlssvvlwvsqnved 164
                   +a karv+  ++f+l++ gl +++++l+l+  + ++y  +   + Gv++++q +li+++  +++vs++  d
  KOO25263.1 110 --LACKARVWVTTSFVLMFCGLGAAIWILVLDLQLgPQY--Y--HWGGVSVMIQTVLILIGGFLFRVSRRGGD 176
                 ..99*****************************997887..3..8***********************97666 PP

>> TssN  Type VI secretion system, TssN
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.8   1.9e-05      0.17      63     139 ..      85     162 ..      75     170 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 1.9e-05
        TssN  63 illqilylllGilhlylllkkffkelkekk.ilfeilltlivillglvlfvlvfnllselqygvwaatsllvfiipll 139
                 il+++  + l i++  +++++f + l  k  +++++ ++l+++ lg+++++lv +l  + qy +w   s+++ ++ +l
  KOO25263.1  85 ILSTVGLIALNIINWDAVTEDFDSGLACKArVWVTTSFVLMFCGLGAAIWILVLDLQLGPQYYHWGGVSVMIQTVLIL 162
                 56667777788889999999999999999989999******************************9999998887776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (179 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       449  (0.0250432); expected 358.6 (0.02)
Passed bias filter:                      246  (0.0137208); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.41u 0.24s 00:00:00.64 Elapsed: 00:00:00.41
# Mc/sec: 1318.20
//
Query:       KOO25264.1  [L=201]
Description: hypothetical protein Ctob_009426 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (201 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       617  (0.0344135); expected 358.6 (0.02)
Passed bias filter:                      381  (0.0212505); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.41u 0.24s 00:00:00.64 Elapsed: 00:00:00.41
# Mc/sec: 1483.76
//
Query:       KOO25265.1  [L=195]
Description: hypothetical protein Ctob_009425 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (195 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       262  (0.0146132); expected 358.6 (0.02)
Passed bias filter:                      246  (0.0137208); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.43u 0.23s 00:00:00.66 Elapsed: 00:00:00.41
# Mc/sec: 1418.86
//
Query:       KOO25266.1  [L=171]
Description: hypothetical protein Ctob_009424 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    0.00018   21.2   0.1    0.00032   20.5   0.1    1.4  1  PDZ_6     PDZ domain
     0.0002   21.7   0.0    0.00034   20.9   0.0    1.4  1  PDZ       PDZ domain
      0.009   16.3   0.0      0.023   15.0   0.0    1.6  2  PDZ_2     PDZ domain


Domain annotation for each model (and alignments):
>> PDZ_6  PDZ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.5   0.1   5.3e-08   0.00032       1      53 [.      91     142 ..      91     145 .. 0.89

  Alignments for each domain:
  == domain 1  score: 20.5 bits;  conditional E-value: 5.3e-08
       PDZ_6   1 vVtaVdpgsPAdrAG.lrvGDiilsvNGqpveglsladvaallrgsagesvvlv 53 
                 +V +V+ g+ A  AG l+  D+i +v G+pv   +l+  + +l + a ++ +++
  KOO25266.1  91 FVDEVVVGGAAHVAGgLQEWDCISAVEGRPV--FTLQATVKALSAVAKKQPTIR 142
                 799***********88***************..***999999987777776665 PP

>> PDZ  PDZ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.9   0.0   5.7e-08   0.00034       5      79 ..      72     143 ..      68     146 .. 0.73

  Alignments for each domain:
  == domain 1  score: 20.9 bits;  conditional E-value: 5.7e-08
                 ETSTTSESSEEEEEETTSSSSSSEEEEEECTTSHHHHHT.SSTTEEEEEETTEETTTSHHHHHHHHHHTTTS.EEEE CS
         PDZ   5 ekegrgglGfslkggsdqrgdkgifvsevlpggaaeadg.lkvGDkIlsvNgvdvenvsheeavqaikgskg.kvtL 79 
                 ++ +++++G+    ++        fv ev+ ggaa+++g l++ D I +v g++v +++ + +++    +k+ +++L
  KOO25266.1  72 SRAEGQEFGLYMMQDTG-----APFVDEVVVGGAAHVAGgLQEWDCISAVEGRPVFTLQATVKALSAVAKKQpTIRL 143
                 45455555555544444.....57******************************99986665555555555557776 PP

>> PDZ_2  PDZ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.0      0.64   3.8e+03      54      71 ..      55      73 ..      48      83 .. 0.67
   2 !   15.0   0.0   3.9e-06     0.023      11      71 ..      85     147 ..      69     156 .. 0.86

  Alignments for each domain:
  == domain 1  score: -1.7 bits;  conditional E-value: 0.64
                HHHHTS-TT-E.EEEEEEE CS
       PDZ_2 54 slllkkkpGdt.VkltvlR 71
                 ll+++ pG t   +t++R
  KOO25266.1 55 ALLNGTFPGATtHVVTISR 73
                4566777885515567777 PP

  == domain 2  score: 15.0 bits;  conditional E-value: 3.9e-06
                 --..-EEEEEE-TTSGGGGT..--TT-EEEEETTB--SSHHHHHHHHH.TS-TT-EEEEEEEE CS
       PDZ_2  11 edtggvlvvsVkeggPaakag.lkagDvilkvdgkkvksledlislll.kkkpGdtVkltvlR 71 
                 +dtg   v +V  gg a+ ag l+  D i +v+g++v +l+   ++l+  +k++ t++l+  R
  KOO25266.1  85 QDTGAPFVDEVVVGGAAHVAGgLQEWDCISAVEGRPVFTLQATVKALSaVAKKQPTIRLQARR 147
                 3355778889**********99*****************999999999889999999999877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (171 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       247  (0.0137766); expected 358.6 (0.02)
Passed bias filter:                      207  (0.0115455); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.39u 0.25s 00:00:00.64 Elapsed: 00:00:00.42
# Mc/sec: 1223.23
//
Query:       KOO25267.1  [L=406]
Description: farnesyl pyrophosphate synthase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.8e-85  285.5   0.2    3.5e-85  285.1   0.2    1.1  1  polyprenyl_synt  Polyprenyl synthetase


Domain annotation for each model (and alignments):
>> polyprenyl_synt  Polyprenyl synthetase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  285.1   0.2     2e-89   3.5e-85       2     255 ..      95     361 ..      94     362 .. 0.93

  Alignments for each domain:
  == domain 1  score: 285.1 bits;  conditional E-value: 2e-89
                      HHHHHHHHHHHHSSS--HHHHHHHHHHHHHSCG....HHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-SEETTEE-HHHCTCHHH.HHHHHHHH CS
  polyprenyl_synt   2 elleealeylveagGKrlRpllvllaaealkee....eeelekaavlawivellhaasLvhDDimDdsetRRGqpcahrlvGnkl.Aindgdfl 90 
                      e++++++ey+v ++GK  R+l+v++a++ +k+     + e+++aa+l+w ve+l+a +Lv+DDimD setRRGqpc++ l ++kl Aindg +l
       KOO25267.1  95 EYMKRLMEYNV-PKGKLARGLTVIQAYKSIKKAdkisDVEFRRAAALGWTVEWLQAQFLVMDDIMDASETRRGQPCWYLLPDVKLnAINDGLLL 187
                      67899******.*******************4445665789***************************************888855******** PP

                      HHHHHHHHHHHH....STTHHHHHHHHHHHHHHHHHHHHHH..HHTTTTTCCC.SHHHHHHHHHHHTH.HHCHHHHHHHHHHTTHHH.HHHHHH CS
  polyprenyl_synt  91 larafellaklf....ekslellelfsevllqtveGqlldl..eeekdddlskfsleeyleivkyKTa.ylfalpvalaallagasd.eeleal 176
                      +++++ +l+k+f    e +++l++l++e+++qt+ Gq+ldl  +e +++d+ +fsl+ y++iv yKTa y+f+lp+al++ lag++d + ++ +
       KOO25267.1 188 ECQIYVILKKYFgaetELYVQLFQLIQETTHQTALGQFLDLttSEPHKVDFGRFSLDVYSDIVIYKTAfYSFYLPCALGMRLAGVNDpKLYDLA 281
                      *************965555**********************65555799999********************************9987999*** PP

                      HHHHHHHHHHHHHHHHHHHHHS-HHHHSS-TSHHHHTT---HHHHHHHHCT-HHHHHHHHHHTT..SSHHHHHHHHHHHHH CS
  polyprenyl_synt 177 kdiglelGlaFQiqDDylDlfgdpevlgKpagtDiqegkctlpilkalelaspeqrkvlkeilg..kkaekeedvkealel 255
                      k+i+ e+G++FQ+qDDylD++gdp+++gK+ gtDi+++kc ++i+ al ++s eqrk+l++++    +a++e++vk+++++
       KOO25267.1 282 KTICIEIGHLFQVQDDYLDCYGDPDTIGKI-GTDIRDNKCGWLINRALAKCSVEQRKELEKNYAkgVDASAEAKVKKIFKD 361
                      ******************************.********************************966677899999*99986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (406 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       796  (0.0443973); expected 358.6 (0.02)
Passed bias filter:                      632  (0.0352502); expected 358.6 (0.02)
Passed Vit filter:                        55  (0.00306766); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.51u 0.26s 00:00:00.77 Elapsed: 00:00:00.41
# Mc/sec: 2987.05
//
Query:       KOO25268.1  [L=437]
Description: cellulase (glycosyl hydrolase family 5) subfamily protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.1e-32  111.4   0.0      1e-31  110.4   0.0    1.4  1  Cellulase  Cellulase (glycosyl hydrolase family 5)


Domain annotation for each model (and alignments):
>> Cellulase  Cellulase (glycosyl hydrolase family 5)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  110.4   0.0   5.8e-36     1e-31       7     280 ..     122     404 ..     116     405 .. 0.87

  Alignments for each domain:
  == domain 1  score: 110.4 bits;  conditional E-value: 5.8e-36
                 EEEGEEECETTSCGG.....SHHHHHHHHHHHT-SEEEEEEECTGGTTSSTTTGCTHHHHHHHHHHHHHHHHTT-EEEEEEESS.......TTTCSSSS CS
   Cellulase   7 pvnlkglstswgnpy.....ttkalidevkdagfntvRlpvswgelvenapdykvdenslerveevvkyakenglyvildiHse.......egwltkad 93 
                  v+++g++  + +p+     ++  l+d ++ ++fn++R+p+s+ + ++            +  +++     +++l v+ld+H+        ++w     
  KOO25268.1 122 GVSWFGMEEAYAMPQglewaQMSHLLDFIAHNKFNALRVPLSVSSVLD----------DNKMPDTFGGSQPARNLLVLLDLHRLtagdrdnPLW----- 205
                 57899999999888889888889999****************977772..........2344688889999************86666665556..... PP

                 TTTTHHHHHHHHHHHHHHHHHHHTTTTTTEEEESSSS--STTCTCCT.CHHHTTHHHHHHHHHHHHHHHHTTSSEEEEECHH................. CS
   Cellulase  94 gnssedtaeeffkklwtqiAerykkndevvifelmNEPhgnntgaew.tseeadevkayaeeaikaIRavgpnrliivegns................. 174
                  ++s  + e+ +  +w  +A+r  +n +vv+ +l+NEP      a w  +++a++++a+ae++++a+  + p +l++veg+s                 
  KOO25268.1 206 -YDSRVS-EQMLVGAWGRLAARHCDNWNVVGADLFNEPWA----AAWgGNSTAEDWAAAAERIAAAVERACPRWLLFVEGVShttgsgapsagssqtee 298
                 .444444.5555666*************************....77989999*********************************************** PP

                 ...HHTBHHHHHCTSG.SSSSTTEEEEEEEETTTHHHTGCGSHSCTHHHHHHHHHHHHHHHHHHTTSEEEEEEEESSTTSSHHHHHHHHHH....HHHH CS
   Cellulase 175 ...wsgnldgavlndP.ndsqdnliysvHfYgpsdfaqtefgkdltdktnlaqrledaakylvekgipviigEfGgsnadgdlakeeaekw....ldyl 265
                    w++n++g + + P    + + +ys+H Ygps+  q+ f +++ ++ n++  + ++++yl  +   v++gE+Gg   +g     ++e w    +++l
  KOO25268.1 299 ghnWAANVEG-ARTRPlAIRAAKRVYSPHVYGPSVAPQPYF-SNESFPANMPPIWHAHFGYLAGRTGCVVVGEWGGF-FEG-----ADEVWqrafATWL 389
                 **********.999**7446899******************.99*******************************94.555.....344444456**** PP

                 HHTTTEEEEEEESSS CS
   Cellulase 266 kekgiswiyWslnpk 280
                  e++i+ +yW+lnp 
  KOO25268.1 390 SEHRIGSFYWALNPT 404
                 ************996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (437 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       423  (0.0235931); expected 358.6 (0.02)
Passed bias filter:                      255  (0.0142228); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.27s 00:00:00.76 Elapsed: 00:00:00.43
# Mc/sec: 3077.92
//
Query:       KOO25269.1  [L=298]
Description: peptidyl-prolyl cis-trans isomerase d [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    9.5e-29  100.7   0.0    1.5e-28  100.1   0.0    1.2  1  Pro_isomerase  Cyclophilin type peptidyl-prolyl cis-trans iso


Domain annotation for each model (and alignments):
>> Pro_isomerase  Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  100.1   0.0   8.3e-33   1.5e-28      10     144 ..     123     252 ..     116     264 .. 0.84

  Alignments for each domain:
  == domain 1  score: 100.1 bits;  conditional E-value: 8.3e-33
  Pro_isomerase  10 GrivieLfadkaPktvenFlklvkeg......fYdgttFhRvikgfmvqgGdptgktsageqekkggesiraipdEit.sklkh.krGalamartg 97 
                    Gri++ L+a + P ++enF+++++ g      +Y+g++F+R+i+ f+ qgG    +      +  gg    a++d+    +l+h ++G+l++a++g
     KOO25269.1 123 GRIEFALYAHESPRAAENFRAMCT-GekggqyTYKGMRFYRIIDMFIDQGGSNFVN------SIWGG----AFDDDPGgLELRHdRAGLLSAANSG 207
                    9**********************5.5577787********************2222......22344....5889998789999677********8 PP

  Pro_isomerase  98 kepnsagsqFfItlkeaphldgkytvFGkVveGmdvvekiekvetde 144
                      p++++ +F I++++aphld++yt+FG+V++G dv+ +i+k+++ +
     KOO25269.1 208 --PDTNSGHFSIVVAPAPHLDKSYTIFGEVTKGWDVMMAINKLDKFD 252
                    ..8***************************************86544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (298 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       379  (0.0211389); expected 358.6 (0.02)
Passed bias filter:                      286  (0.0159518); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.22s 00:00:00.65 Elapsed: 00:00:00.38
# Mc/sec: 2332.96
//
Query:       KOO25270.1  [L=183]
Description: hypothetical protein Ctob_009420, partial [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    0.00014   21.6   0.0    0.00022   21.0   0.0    1.3  1  ZZ            Zinc finger, ZZ type
  ------ inclusion threshold ------
        8.3    5.7  19.1         12    5.1  19.1    1.2  1  DUF4407       Domain of unknown function (DUF4407)
        8.8    6.1  14.7         10    5.8  14.7    1.1  1  RR_TM4-6      Ryanodine Receptor TM 4-6


Domain annotation for each model (and alignments):
>> ZZ  Zinc finger, ZZ type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.0   0.0   3.7e-08   0.00022       4      33 ..      40      68 ..      37      78 .. 0.89

  Alignments for each domain:
  == domain 1  score: 21.0 bits;  conditional E-value: 3.7e-08
                -EE-TTT-S..EESSEEEESSSSS-EE-HH CS
          ZZ  4 kytCdgCseapligvRyhclrcsdYDLCqs 33
                  +Cd  +  p++g+Ryh lr ++YDLCq 
  KOO25270.1 40 SIICDRSGMHPIVGMRYH-LRGKNYDLCQA 68
                679***************.9********96 PP

>> DUF4407  Domain of unknown function (DUF4407)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.1  19.1     0.002        12     145     226 ..      66     169 ..      55     183 .] 0.63

  Alignments for each domain:
  == domain 1  score: 5.1 bits;  conditional E-value: 0.002
     DUF4407 145 lqaeidaaearldalraeaqkeldgtkgtgttgvaGkgpaakekkaqldaaqaelaelkakld.......................atarlaalraela 220
                  qae+d+++a+ ++++++ q  +dg+k  g +  +   +a +++ka+ ++a+ae ++lka+ +                       ++++ +++++e +
  KOO25270.1  66 CQAEFDELDADEQEEYEAIQPPVDGDKH-GASHAQAAATAKQAAKADEARAKAEAEALKAEERfeaqrakeaqqqhpksrsldkltQKQEAEERQEETQ 163
                 6899999999999999999999999873.4555667777777777788888888888888855666555544444444444444444444444444444 PP

     DUF4407 221 eleaer 226
                 +l++e+
  KOO25270.1 164 GLTEEL 169
                 444444 PP

>> RR_TM4-6  Ryanodine Receptor TM 4-6
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.8  14.7    0.0017        10      76     170 ..      76     172 ..      44     181 .. 0.55

  Alignments for each domain:
  == domain 1  score: 5.8 bits;  conditional E-value: 0.0017
                 XXXXXXXX...XXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXX..........XXXXXXXXXXXXXXXXXXXXXXXXX-HHHHHHH CS
    RR_TM4-6  76 teaeespt...pelkkklaeeeeaeeekeeeeepeaeaeekadaengekeekekekeeeekeseeeeeekkkkkkakskkkeeaeaeesellkklevy 170
                 +e ee  +   p+   k+  +++++ +++++  +  ea+ ka+ae  ++ee+ ++ ++++++++++ ++ +  k +++++ ee ++e++ l ++l  +
  KOO25270.1  76 DEQEEYEAiqpPVDGDKHGASHAQAAATAKQAAKADEARAKAEAEALKAEERFEA-QRAKEAQQQHPKSRSLDKLTQKQEAEERQEETQGLTEELTKQ 172
                 3333332233466667777655666666666666666655666555555444443.444444444455555555555555555566666666666554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (183 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2607  (0.145407); expected 358.6 (0.02)
Passed bias filter:                      701  (0.0390987); expected 358.6 (0.02)
Passed Vit filter:                        91  (0.00507558); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.49u 0.25s 00:00:00.74 Elapsed: 00:00:00.39
# Mc/sec: 1418.93
//
Query:       KOO25271.1  [L=471]
Description: RNA family [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    4.5e-30  104.7   0.0    6.6e-30  104.1   0.0    1.2  1  SpoU_methylase  SpoU rRNA Methylase family
    0.00011   22.5   7.7    0.00042   20.6   7.7    2.1  1  EGF_2           EGF-like domain


Domain annotation for each model (and alignments):
>> SpoU_methylase  SpoU rRNA Methylase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  104.1   0.0   7.3e-34   6.6e-30       2     142 .]     153     295 ..     152     295 .. 0.94

  Alignments for each domain:
  == domain 1  score: 104.1 bits;  conditional E-value: 7.3e-34
                     EEEEEES-SSHHHHHHHHHHHHHTT-SEEEEESGSSCTCGSHHHHHHCTTHHHHHHEEEESSHHHHHHHHCCCTEEEEEEST.T-SEGC.CSHHH CS
  SpoU_methylase   2 livvlveiedpgNlGaiaRtakafgaselvlvkprsadllnpeakraaagalevlelkvvdsleealkelkeegfalvatsl.kgksls.eidlk 94 
                     l++vl++++++ N+Ga++Rta+++g+s+l+l++  +a++ + +++r+++ga+ ++ ++  +s+e+al+el+ +gf +v++++  + +l  +++++
      KOO25271.1 153 LHFVLDHLRSAFNVGALFRTADCLGVSCLWLCG-YTATPEDAQVQRTTMGAHAHVAWQWRQSTEAALDELRAQGFCIVGLETvANAPLAsDFTFP 246
                     789*****************************9.7778******************************************997444444599999 PP

                     .TTEEEEEEBTTTBS-HHHHCTSSEEEE----TTSSS--HHHHHHHHHH CS
  SpoU_methylase  95 .ekvalvfGnEdkGlsnelleladrlvkIpmsgeveSLNvavAvailly 142
                        va+v+GnE++Gl++ +l+++d +v++p +g  +S+Nvav+++++ y
      KOO25271.1 247 rTGVAIVLGNERHGLEPGVLARCDAVVQLPCRGVKNSMNVAVSAGMCGY 295
                     999******************************************9876 PP

>> EGF_2  EGF-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.6   7.7   4.6e-08   0.00042       5      32 .]     334     365 ..     329     365 .. 0.88

  Alignments for each domain:
  == domain 1  score: 20.6 bits;  conditional E-value: 4.6e-08
       EGF_2   5 deiCgghGtCvnqcG....qCdCdsgyqGktC 32 
                 + +C+g+G C++++G     C+C +++ G+ C
  KOO25271.1 334 NGTCSGRGRCETAGGhapgHCVCADSWAGDAC 365
                 679********999977777************ PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (471 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       592  (0.0330191); expected 358.6 (0.02)
Passed bias filter:                      406  (0.0226449); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.49u 0.27s 00:00:00.76 Elapsed: 00:00:00.42
# Mc/sec: 3356.83
//
Query:       KOO25272.1  [L=199]
Description: hypothetical protein Ctob_013128 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (199 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       243  (0.0135535); expected 358.6 (0.02)
Passed bias filter:                      197  (0.0109878); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.39u 0.27s 00:00:00.66 Elapsed: 00:00:00.42
# Mc/sec: 1415.53
//
Query:       KOO25273.1  [L=102]
Description: hypothetical protein Ctob_013127 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (102 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       483  (0.0269396); expected 358.6 (0.02)
Passed bias filter:                      233  (0.0129957); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.26s 00:00:00.64 Elapsed: 00:00:00.42
# Mc/sec: 725.26
//
Query:       KOO25274.1  [L=676]
Description: hypothetical protein Ctob_013130 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.2e-46  157.8  43.2      4e-46  157.5  43.2    1.1  1  Na_H_Exchanger  Sodium/hydrogen exchanger family
    0.00078   18.8   0.0       0.18   11.4   0.0    2.6  2  EF-hand_1       EF hand
     0.0011   18.4   0.0        0.6    9.7   0.0    2.6  2  EF-hand_5       EF hand
     0.0029   18.0   0.0      0.062   13.8   0.0    2.3  2  EF-hand_7       EF-hand domain pair
  ------ inclusion threshold ------
      0.098   12.5   0.0        5.3    7.0   0.0    2.5  2  EF-hand_8       EF-hand domain pair


Domain annotation for each model (and alignments):
>> Na_H_Exchanger  Sodium/hydrogen exchanger family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  157.5  43.2   1.1e-49     4e-46       3     379 ..      58     440 ..      55     442 .. 0.88

  Alignments for each domain:
  == domain 1  score: 157.5 bits;  conditional E-value: 1.1e-49
                     HHHHHHHHHHHHHHHTTSXHHHHHHHHHHHHTTTTTS.....HHHCHCCHHHHCHHCCHHHHCTCGCCTGCCTHHHHHHHHHHHHHHHHHHHHHH CS
  Na_H_Exchanger   3 llillallvgllarrlklpeivgliiaGlllGpsglgliepseedlevlselglilllFlaGleldlrelrknlksilllallgvlitvvliGll 97 
                     +l++++l+v++ ++ l++ +++g++++G+ +Gp+glg++++s e    l ++g+++llF  Gl l++++l+k l+  ++l+l+++l+t+++i+ +
      KOO25274.1  58 FLVASVLVVPI-SKVLNITPVLGFLVLGCAIGPYGLGFFSNS-EADLQLGDFGIVFLLFIEGLQLSPDRLKK-LGNFFQLGLAQFLLTIAAITAA 149
                     56777888888.*****************************9.9999***********************55.699***************8776 PP

                     HH.H....................HTXTTCHHHHHHHHHHHTSSXHHHHHHHC.CCCTSTCCCCCCHHHHHHHHHHHCCCCCHHHHHHTXXXXXT CS
  Na_H_Exchanger  98 lyll....................lilgiplleallfgailsatdpvvvlailkeegrvperlgtlllgesvlnDavavvllavllalakeeagg 172
                       +l                    lil  p+++ +l+ga  ++++ ++v+++lk +g  ++  gt +l++++l+D+++ +ll++l+ la++++  
      KOO25274.1 150 NLYLgpriletaerfiqlddalvrLILTTPVVAFTLAGAG-ALSSSAFVIPVLKQKGWEERADGTAALAVLLLQDIAVAPLLVILPLLAGSGTDF 243
                     66558****************9998877787777777765.779*********8888888889**************************443444 PP

                     SSSTSXHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTHHHHHHHHHHHHHHHHHHHHHTSXXXHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHH CS
  Na_H_Exchanger 173 etslllllliflvvavgglllglvigwllrlitrftdddrelevllvlllallaallaellgvsgilgaflaGlvlseyefsnklseklesfreg 267
                     e+  +l+++ ++ +++++ ++ +v+  +++++ ++  +++e++v+++ll+a ++ ++a++lg+s+  gaf+aG++l+++ +++++++++++f  g
      KOO25274.1 244 ESLEVLVVKGTFGFGAVLAVGAVVLRQMFSIVAAT--RSSETFVAAALLVAVGMGAAADKLGLSATTGAFAAGVLLAGSQYRQQIEADISPFE-G 335
                     44444444455555555555566666666666666..9*******************************************************.* PP

                     HHHHHHHHHHHHHSXHHHHHXXHHHHHHHHHHHHHHHTHHHHHHHHHTTTX.SSXHHHHHHCCCCSS.BHHHHHHHHHHHHHHXHHHHTTSSTTT CS
  Na_H_Exchanger 268 lfnplfFvlvGlsldlkvlnnhlsvlilvllilvaillgrilavflllrll.glslrealiigfgglqrgavalalaalgpalgllarelyalli 361
                     +++++fF+  G+ ld+++    +  ++ ++  ++a++ +++  +f+l  +  gl++ ea+ i++++++ g++a++++ l+++lgl++++l +ll+
      KOO25274.1 336 ILLGIFFMTAGAALDPALC---VAEWPTLVSGILAFTGAKLGLIFALGAFAfGLTRAEAIRIALLLAGGGEFAFVVFKLAEQLGLIEAKLSSLLT 427
                     ***************9999...8888888888888889*********998889****************************************** PP

                     CSTSXHHHHHHHHHHHHH CS
  Na_H_Exchanger 362 vvvlftvlvqGlslkpll 379
                     + v++++      l+pll
      KOO25274.1 428 ASVILSMS-----LTPLL 440
                     ******99.....88876 PP

>> EF-hand_1  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.7   0.0     0.007        25      14      26 ..     470     482 ..     469     485 .. 0.86
   2 !   11.4   0.0     5e-05      0.18       1      24 [.     631     654 ..     631     655 .. 0.92

  Alignments for each domain:
  == domain 1  score: 4.7 bits;  conditional E-value: 0.007
                 SSEEEHHHHHHHH CS
   EF-hand_1  14 dGkIdfeEfkell 26 
                 dG I+++E+++  
  KOO25274.1 470 DGVISLDELRRGY 482
                 9********9876 PP

  == domain 2  score: 11.4 bits;  conditional E-value: 5e-05
                 HHHHHHHHHTTTSSSEEEHHHHHH CS
   EF-hand_1   1 elkeiFrefDkDgdGkIdfeEfke 24 
                 el++ +r +D Dg+ +++f E+++
  KOO25274.1 631 ELERWMRQADLDGSNTLSFFEYVR 654
                 78999****************987 PP

>> EF-hand_5  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.0   0.0    0.0025       8.9      13      23 ..     470     480 ..     469     482 .. 0.93
   2 !    9.7   0.0   0.00017       0.6       1      21 [.     632     652 ..     632     655 .. 0.88

  Alignments for each domain:
  == domain 1  score: 6.0 bits;  conditional E-value: 0.0025
                 SSCE-HHHHHH CS
   EF-hand_5  13 DGkIskeELkt 23 
                 DG Is +EL++
  KOO25274.1 470 DGVISLDELRR 480
                 9********97 PP

  == domain 2  score: 9.7 bits;  conditional E-value: 0.00017
                 HHHHHHHH-SS-SSCE-HHHH CS
   EF-hand_5   1 lkdtFqaiDlNgDGkIskeEL 21 
                 l+ + +++Dl+g+ ++s+ E 
  KOO25274.1 632 LERWMRQADLDGSNTLSFFEY 652
                 56799************9885 PP

>> EF-hand_7  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.7   0.0       0.1   3.6e+02      58      70 ..     470     482 ..     467     504 .. 0.79
   2 !   13.8   0.0   1.7e-05     0.062      19      68 ..     609     654 ..     593     655 .. 0.75

  Alignments for each domain:
  == domain 1  score: 1.7 bits;  conditional E-value: 0.1
   EF-hand_7  58 dGvisfdEFlkly 70 
                 dGvis+dE+++ y
  KOO25274.1 470 DGVISLDELRRGY 482
                 7777777776654 PP

  == domain 2  score: 13.8 bits;  conditional E-value: 1.7e-05
   EF-hand_7  19 ldkeellrllrkifqgagegsklsdeelellfkefDtdkdGvisfdEFlk 68 
                 ++++ ++++l +     g   ++ + ele++++  D+d++ ++sf E+++
  KOO25274.1 609 VEMSAVREMLARA----GKPGPIMPPELERWMRQADLDGSNTLSFFEYVR 654
                 5555555544443....666677778*********************986 PP

>> EF-hand_8  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.9   0.0     0.027        96       2      14 ..     470     482 ..     469     498 .. 0.73
   2 ?    7.0   0.0    0.0015       5.3      32      49 ..     636     653 ..     606     655 .. 0.85

  Alignments for each domain:
  == domain 1  score: 2.9 bits;  conditional E-value: 0.027
   EF-hand_8   2 kgkItreelrril 14 
                 +g+I+ +elrr +
  KOO25274.1 470 DGVISLDELRRGY 482
                 899*******944 PP

  == domain 2  score: 7.0 bits;  conditional E-value: 0.0015
   EF-hand_8  32 frefDtdgdGkisfeEFc 49 
                 +r +D+dg++++sf E++
  KOO25274.1 636 MRQADLDGSNTLSFFEYV 653
                 7899************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (676 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       681  (0.0379832); expected 358.6 (0.02)
Passed bias filter:                      388  (0.0216409); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.57u 0.27s 00:00:00.84 Elapsed: 00:00:00.41
# Mc/sec: 4951.33
//
Query:       KOO25275.1  [L=367]
Description: RNA (guanine-9-)-methyltransferase domain-containing protein 2-like protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    2.6e-25   89.3   0.1    5.4e-25   88.2   0.0    1.5  2  tRNA_m1G_MT  tRNA (Guanine-1)-methyltransferase
  ------ inclusion threshold ------
      0.055   13.0   0.3      0.091   12.3   0.3    1.3  1  DUF5037      Domain of unknown function (DUF5037)
        1.9    6.5   9.8        2.8    5.9   9.8    1.2  1  DUF2828      Domain of unknown function (DUF2828)


Domain annotation for each model (and alignments):
>> tRNA_m1G_MT  tRNA (Guanine-1)-methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.1      0.83   4.9e+03      39      63 ..      86     110 ..      63     124 .. 0.48
   2 !   88.2   0.0     9e-29   5.4e-25       2     194 ..     157     321 ..     156     322 .. 0.94

  Alignments for each domain:
  == domain 1  score: -3.0 bits;  conditional E-value: 0.83
                  HHHHHHHHHHHCCGHHCGG-TTEEE CS
  tRNA_m1G_MT  39 mvlkaepelealesvntekwkvill 63 
                  +++++++e  ++ +++ + w+++ +
   KOO25275.1  86 KKMEIKEEKAQRRAAAQARWETLSP 110
                  2222222222222223344554444 PP

  == domain 2  score: 88.2 bits;  conditional E-value: 9e-29
                  GGSHHHHHHHHHHHHHHHHHHHHCSSCEEEEEEETSSHHHHHHHHHHHCCGHHCGG-TTEEEESSCGGHHHHCCCHHHCGGGEEEEETTTSSBECCGG CS
  tRNA_m1G_MT   2 kkasekelvslevqllrdytanrrntvddelygggagmvlkaepelealesvntekwkvilltptGkkftqelaeeLsekeklvylcgdyegvdervd 99 
                  ++++++e+ sl++ql ++++anrr+  + +l ++ +g +l+a     +l+s    +w+++ + p+ +++ +       e+++lvyl+ +++ v++++d
   KOO25275.1 157 ELMNDREIASLAQQLSYCHSANRRSAFPMRLAFTSVGGKLEA-----KLKS-GWPGWRNWAIRPEPRHYLEVFP----EHSSLVYLSSESDVVLDTLD 244
                  78************************************9976.....4555.4679*********999999888....599***************** PP

                  TTSSEEEEEESSSSTTCSTTHHHHHHHHHHHHTTTC.EEB-S-CCC...CHCTS..CTTSEHHTEHHHHHHHHHCCCTTTHHHHHHHHHHHSCSX CS
  tRNA_m1G_MT 100 ddkvdeysIGdfVlkggekgalvlidavkrllaGvlntaslpedsfsnrllekpnytrpltlrglkVpeiLlsgnhakienWrlkealertvprR 194
                   +   +y++G++V+++++kg+    ++  +++a+v  ta+lp+d++   + + +  +r+l+++  +V+eiL+  +     +W  +  l +++p+R
   KOO25275.1 245 SSE--VYIVGGLVDHNKQKGL----THRLASEANVR-TARLPIDEY---MSMSQ--RRVLAVN--HVVEILTLRAS--GLDW--TSVLTKVMPQR 321
                  ***..****************....***********.*********...99999..9******..*******9999..9999..99999999988 PP

>> DUF5037  Domain of unknown function (DUF5037)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.3   1.5e-05     0.091      43      93 ..      52     102 ..      26     135 .. 0.76

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 1.5e-05
     DUF5037  43 sdpkhpfegsyfypeeknakieviddgyaerllakqmeskvekavsqvaen 93 
                 s        s  yp +k  k    d+ +a r  ak+me k eka  + a +
  KOO25275.1  52 SKATAGSSASAAYPSKKAMKRAKKDEYFAARKQAKKMEIKEEKAQRRAAAQ 102
                 445555677899********************************8877754 PP

>> DUF2828  Domain of unknown function (DUF2828)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.9   9.8   0.00047       2.8     130     224 ..      74     166 ..      62     176 .. 0.71

  Alignments for each domain:
  == domain 1  score: 5.9 bits;  conditional E-value: 0.00047
     DUF2828 130 dpkkvlnvkkekkkeekkkkkkkkkkekkkerkkeekekkeeekeeakekrkekeaeraeklleklesdkkyraLhltvarlFaeqLkkDlelle 224
                 ++++  +++k++kk e k++k++++ + +++ ++ + e+++e k++a+ek+++++a+++e++ ++ + +  +raL ++v +l  ++L +D e+ +
  KOO25275.1  74 KKDEYFAARKQAKKMEIKEEKAQRRAAAQARWETLSPEEQAELKRQAAEKSAQRTAAQNEEAAARAAME--HRALPTCVVDLSFDELMNDREIAS 166
                 334444455555555555555555555666666778888888888999999999999999988887765..6****************9998765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (367 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1839  (0.102571); expected 358.6 (0.02)
Passed bias filter:                      619  (0.0345251); expected 358.6 (0.02)
Passed Vit filter:                        84  (0.00468515); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.57u 0.27s 00:00:00.84 Elapsed: 00:00:00.43
# Mc/sec: 2582.53
//
Query:       KOO25276.1  [L=1264]
Description: c2 domain-containing protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.6e-22   79.1   0.0    2.7e-15   56.5   0.0    3.6  3  C2              C2 domain
     0.0034   17.1   0.0     0.0065   16.2   0.0    1.4  1  PTEN_C2         C2 domain of PTEN tumour-suppressor protein
  ------ inclusion threshold ------
       0.14   12.6   0.0       0.46   10.9   0.0    1.9  1  Transglut_core  Transglutaminase-like superfamily


Domain annotation for each model (and alignments):
>> C2  C2 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   0.0   1.4e-06    0.0082       8      93 ..     244     335 ..     238     344 .. 0.79
   2 !   56.5   0.0   4.5e-19   2.7e-15       2      96 ..     413     513 ..     412     517 .. 0.93
   3 ?    1.2   0.0     0.077   4.6e+02      22      59 ..     627     670 ..     608     681 .. 0.71

  Alignments for each domain:
  == domain 1  score: 16.4 bits;  conditional E-value: 1.4e-06
                 EEEESSSSSST....TSSCEEEEEEEEECEEEEEE-SCSSSSS..SEEEEEEEEEESC...HTTSEEEEEEEEECSSSTEEEEEEEEEEGHHHHT CS
          C2   8 ieAknLpnkdk....kgssdpyvkvsldgkqkakTrviknsln..PvWnekftfevae...leeakLeveVfdndrlskddfiGkveiplstlls 93 
                  +A++L ++++    +g+ dp+ k s+ +++  ++    n l+    +  + t e a+   + +++  +eV+d+d  s+ d++G +e+pl+  l 
  KOO25276.1 244 WSARKLLPMEAeaggEGTADPFLKFSI-KSSSSRSL--ANALQrgGYFGRTTTTEHAPaptSRTRRCAIEVYDWDYGSSADLMGWAEVPLRGALL 335
                 68999999977788899**********.44444444..34433337999999999998999999**************************98443 PP

  == domain 2  score: 56.5 bits;  conditional E-value: 4.5e-19
                 EEEEEEEEEESSSSSSTTSSCEEEEEEEEECEEEEEE-SCSSSSSSEEEEEEEEEESC........HTTSEEEEEEEEECSSSTEEEEEEEEEEGHHHH CS
          C2   2 klevtvieAknLpnkdkkgssdpyvkvsldgkqkakTrviknslnPvWnekftfevae........leeakLeveVfdndrlskddfiGkveiplstll 92 
                 +l v++++++nLp+++  g++dpyv+v    ++ ++Trvi+++l+P+++e+++f+ +          ++  + v V++++ +  dd iG v+ipls+++
  KOO25276.1 413 YLAVQIVRCTNLPQMKPDGTCDPYVSVVW-AATSQQTRVIRSTLSPQYDETLYFPTNLsrissedlAAKGDIVVYVLHHNPVAPDD-IGFVRIPLSKIT 509
                 699**************************.************************8877889999999999***********88888.**********88 PP

                 TTHH CS
          C2  93 sgee 96 
                  +++
  KOO25276.1 510 ASQV 513
                 8776 PP

  == domain 3  score: 1.2 bits;  conditional E-value: 0.077
                 CEEEEEEEE.......ECEEEEEE-SCSSSSSSEEEEEEEE.EESC CS
          C2  22 sdpyvkvsl.......dgkqkakTrviknslnPvWnekftf.evae 59 
                 sdp   + +       ++++++k + ++ + +P+W+   +f +v++
  KOO25276.1 627 SDPMTIARMvrcitfqQDAHIKKEK-KRAT-EPIWSSPTYFlDVRK 670
                 5666666666667777788888888.6666.9***97777656665 PP

>> PTEN_C2  C2 domain of PTEN tumour-suppressor protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.0   1.1e-06    0.0065       8      79 ..     416     492 ..     410     506 .. 0.81

  Alignments for each domain:
  == domain 1  score: 16.2 bits;  conditional E-value: 1.1e-06
                 EEEEEEES----TTSSEE-EEEEEEETTEEEE.....E----GGGS--EEGGG--EEEEEEEEE-SEEEEEEEEEEE CS
     PTEN_C2   8 lksivlegiPkfktrggckpkvkvyngkkkvf.....kelasykdsteyraktfiieeskrvpveGDvlveflhkds 79 
                 ++ ++++ +P++k +g+c+p+v v+  +++ +     ++l+   d t y   +     s+ +  +GD++v +lh + 
  KOO25276.1 416 VQIVRCTNLPQMKPDGTCDPYVSVVWAATSQQtrvirSTLSPQYDETLYFPTNLSRISSEDLAAKGDIVVYVLHHNP 492
                 56688999****************9888888766667777777777777788888888889*************984 PP

>> Transglut_core  Transglutaminase-like superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   7.7e-05      0.46      27      97 ..     645     707 ..     624     726 .. 0.76

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 7.7e-05
  Transglut_core  27 knveysaprrtpgsrd.aeavletgkGncedfaslfvallRalGipaRvvtgylsgeeekeqsvasedaHaw 97 
                      +++ +++r+t    + ++++l  +kG +ed+a l++ l   lG+ a +++g l+g  +          H+w
      KOO25276.1 645 AHIKKEKKRATEPIWSsPTYFLDVRKGASEDHAILMCNLFLGLGLDAYLAIGKLPGGIQ---------QHVW 707
                     555566555555555569*****************************999999997543.........3555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1264 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       606  (0.0338); expected 358.6 (0.02)
Passed bias filter:                      429  (0.0239277); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.79u 0.27s 00:00:01.06 Elapsed: 00:00:00.44
# Mc/sec: 8710.39
//
Query:       KOO25277.1  [L=373]
Description: hypothetical protein Ctob_012155 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        0.1   11.9  13.7       0.25   10.6   0.6    2.4  2  DUF3450    Protein of unknown function (DUF3450)
       0.18   11.6   4.4       0.83    9.5   0.2    2.3  2  KASH_CCD   Coiled-coil region of CCDC155 or KASH
        0.2   11.8   1.4         19    5.5   0.3    2.2  2  Fib_alpha  Fibrinogen alpha/beta chain family
       0.27   11.9   1.8        1.3    9.7   0.1    2.7  3  YabA       Initiation control protein YabA
       0.29   11.5   1.4       0.54   10.6   0.1    2.0  2  TSC22      TSC-22/dip/bun family
       0.48    9.9  12.2        1.5    8.3   3.3    2.3  2  Filament   Intermediate filament protein
       0.75    9.9  11.7       0.29   11.2   1.6    2.5  2  ADIP       Afadin- and alpha -actinin-Binding


Domain annotation for each model (and alignments):
>> DUF3450  Protein of unknown function (DUF3450)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.6   9.7e-05      0.25      15      98 ..     210     294 ..     194     300 .. 0.83
   2 ?    5.3   6.6    0.0041        11      47      97 ..     310     360 ..     307     365 .. 0.90

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 9.7e-05
     DUF3450  15 aatldqalkeaekavaaaaqsqkkidklddekqellaeyralkeeleslevyneqlerlvasqeqeiasleeqi.eeieeierel 98 
                 ++++  a   ++++ a +a++ +   +l+ e ++  a + +l++e+++l+ +n+  +  v+++++ +a+ +++  ++++ ++r+l
  KOO25277.1 210 QQSVMGASPLTAQSLAGSAEARSAAVSLESEGADGRASIAQLTAENSRLSRENQAFRLKVSEMQAVLAKAQRRAaDQLRLVRRAL 294
                 67777777888999999999999999*******************************************9987614555555555 PP

  == domain 2  score: 5.3 bits;  conditional E-value: 0.0041
     DUF3450  47 qellaeyralkeeleslevyneqlerlvasqeqeiasleeqieeieeiere 97 
                 ++ +ae+ +l+++le +   ++q+++lv++ eq+ a+l+ +  + ++ +++
  KOO25277.1 310 ADTAAEIADLRRQLEGAHTVRRQQAELVRKYEQRWAQLKASARRKQQAQQA 360
                 57789**********************************999988888775 PP

>> KASH_CCD  Coiled-coil region of CCDC155 or KASH
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   0.2   0.00032      0.83      84     115 ..     249     280 ..     226     301 .. 0.81
   2 ?    3.3   0.7     0.025        64      42     167 ..     313     351 ..     305     368 .. 0.50

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 0.00032
    KASH_CCD  84 arlkaqnkqlekenqsLiakiesLqeenikll 115
                 a+l a+n++l +enq  + k+ ++q  + k +
  KOO25277.1 249 AQLTAENSRLSRENQAFRLKVSEMQAVLAKAQ 280
                 57888999999999999999999998888875 PP

  == domain 2  score: 3.3 bits;  conditional E-value: 0.025
    KASH_CCD  42 teeieeLkkklkstQqalqkaklleeEleelkalvkeleEkrarlkaqnkqlekenqsLiakiesLqeenikllaekdelkkklkeLlkekaeLkkqlh 140
                 ++ei                                                                                       a+L++ql 
  KOO25277.1 313 AAEI---------------------------------------------------------------------------------------ADLRRQLE 324
                 4455.......................................................................................55555555 PP

    KASH_CCD 141 eleellaekealleektkqieeLklti 167
                  ++++  ++ +l+ + +++  +Lk++ 
  KOO25277.1 325 GAHTVRRQQAELVRKYEQRWAQLKASA 351
                 555554444444444444445554433 PP

>> Fib_alpha  Fibrinogen alpha/beta chain family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.0   0.0    0.0097        25      34      87 ..     245     298 ..     236     303 .. 0.84
   2 ?    5.5   0.3    0.0073        19      32      79 ..     311     358 ..     307     367 .. 0.84

  Alignments for each domain:
  == domain 1  score: 5.0 bits;  conditional E-value: 0.0097
                 CHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
   Fib_alpha  34 kkdlekleneleeisnstkeaeelvkeikdslrekqkskkdndnvikksskele 87 
                 + ++++l+ e +++s++++  +  v+e++ +l+++q+ ++d+ +++++  + l+
  KOO25277.1 245 RASIAQLTAENSRLSRENQAFRLKVSEMQAVLAKAQRRAADQLRLVRRALSALR 298
                 5789999999999999*********************99998888777777776 PP

  == domain 2  score: 5.5 bits;  conditional E-value: 0.0073
                 CCCHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
   Fib_alpha  32 dvkkdlekleneleeisnstkeaeelvkeikdslrekqkskkdndnvi 79 
                 d+  ++++l+++le ++   ++  elv++ ++ +++ ++s++ ++++ 
  KOO25277.1 311 DTAAEIADLRRQLEGAHTVRRQQAELVRKYEQRWAQLKASARRKQQAQ 358
                 67889****************************999988888655443 PP

>> YabA  Initiation control protein YabA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.0       1.5   3.9e+03       5      26 ..     125     146 ..     121     160 .. 0.63
   2 ?    9.7   0.1   0.00052       1.3      28      55 ..     245     279 ..     229     302 .. 0.66
   3 ?   -0.2   0.2      0.62   1.6e+03      35      48 ..     330     343 ..     306     370 .. 0.38

  Alignments for each domain:
  == domain 1  score: -1.5 bits;  conditional E-value: 1.5
                 HHHHHHHHHHHHHHHHHHHHHH CS
        YabA   5 elfdkleeleeqleelleelee 26 
                 e++++l++l++ql +++eel+ 
  KOO25277.1 125 EVYRALARLSSQLISTHEELRF 146
                 5666677777777777666654 PP

  == domain 2  score: 9.7 bits;  conditional E-value: 0.00052
                 HHHHHHHHHHHHHHHHHHHHHHHHH.......XXX CS
        YabA  28 keelaelleenaeLeleneklrerl.......eee 55 
                 ++++a+l+ en++L+ en+ +r ++       +++
  KOO25277.1 245 RASIAQLTAENSRLSRENQAFRLKVsemqavlAKA 279
                 66788899999999999999998883333222222 PP

  == domain 3  score: -0.2 bits;  conditional E-value: 0.62
                 HHHHHHHHHHHHHH CS
        YabA  35 leenaeLelenekl 48 
                   + aeL    e+ 
  KOO25277.1 330 RRQQAELVRKYEQR 343
                 12222222222222 PP

>> TSC22  TSC-22/dip/bun family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.1   0.00021      0.54      20      48 ..     245     273 ..     244     283 .. 0.82
   2 ?   -1.7   0.1       1.4   3.6e+03      30      52 ..     337     359 ..     328     363 .. 0.71

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00021
       TSC22  20 kekIkeLeernseleeENslLkalaspeq 48 
                 +  I+ L+++ns+l +EN+ ++  +s+ q
  KOO25277.1 245 RASIAQLTAENSRLSRENQAFRLKVSEMQ 273
                 678*******************9888654 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 1.4
       TSC22  30 nseleeENslLkalaspeqleql 52 
                 ++++e+  ++Lka a   q +q+
  KOO25277.1 337 VRKYEQRWAQLKASARRKQQAQQ 359
                 56778888889988877766555 PP

>> Filament  Intermediate filament protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6   1.8    0.0019         5     209     276 ..     232     299 ..     219     304 .. 0.74
   2 ?    8.3   3.3    0.0006       1.5     166     214 ..     311     361 ..     298     368 .. 0.75

  Alignments for each domain:
  == domain 1  score: 6.6 bits;  conditional E-value: 0.0019
                 XXXXX-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
    Filament 209 ealrsakeeitelrrqiqsleieleslkkqkasleaqlaeleerleaeleklqeklseleeelaeire 276
                 +a+ s ++e ++ r +i +l++e + l  ++++ + +++e+++ l+++ +++ ++l+ + ++l+ +re
  KOO25277.1 232 SAAVSLESEGADGRASIAQLTAENSRLSRENQAFRLKVSEMQAVLAKAQRRAADQLRLVRRALSALRE 299
                 44455667777888888888888888888888888888888888888888888888877777777765 PP

  == domain 2  score: 8.3 bits;  conditional E-value: 0.0006
                 XXXXXXXXXXXXXXXXXXXXXXXXX..XXXXXXXXXXXXXXXXXXXXXXX- CS
    Filament 166 dLteilkeiraqyeelaeknreeae..ewykskleelqeaaeknsealrsa 214
                 d ++ ++++r+q e      r++ae  + y+++ ++l+ +a+++++a ++a
  KOO25277.1 311 DTAAEIADLRRQLEGAHTVRRQQAElvRKYEQRWAQLKASARRKQQAQQAA 361
                 5677899*******766555555553389*********9999988776665 PP

>> ADIP  Afadin- and alpha -actinin-Binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   1.6   0.00011      0.29      60     112 ..     239     291 ..     227     301 .. 0.78
   2 ?    3.3   2.9     0.031        79     116     149 ..     317     350 ..     306     370 .. 0.60

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00011
        ADIP  60 etirkleaeierlqskierlktqleqlerelalvqakerqlekklktleqklk 112
                  +  + +a+i++l+++ +rl++++++++ +++  qa +++++++ +++ + ++
  KOO25277.1 239 SEGADGRASIAQLTAENSRLSRENQAFRLKVSEMQAVLAKAQRRAADQLRLVR 291
                 45556688899999999999999999999999999999999998888876665 PP

  == domain 2  score: 3.3 bits;  conditional E-value: 0.031
        ADIP 116 eelqrlknalqqiktqyahelkkkdreiekLkek 149
                  +l+r+   + +++ q+a  ++k +++ ++Lk+ 
  KOO25277.1 317 ADLRRQLEGAHTVRRQQAELVRKYEQRWAQLKAS 350
                 4555555555555555555555555555555543 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (373 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1371  (0.0764683); expected 358.6 (0.02)
Passed bias filter:                      443  (0.0247086); expected 358.6 (0.02)
Passed Vit filter:                        55  (0.00306766); expected 17.9 (0.001)
Passed Fwd filter:                        13  (0.000725082); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.53u 0.27s 00:00:00.80 Elapsed: 00:00:00.43
# Mc/sec: 2613.53
//
Query:       KOO25278.1  [L=286]
Description: dmt family transporter: phosphate phosphoenolpyruvate [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.7e-18   67.0   9.0      2e-18   66.8   9.0    1.0  1  TPT       Triose-phosphate Transporter family


Domain annotation for each model (and alignments):
>> TPT  Triose-phosphate Transporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.8   9.0   1.1e-22     2e-18      88     289 ..      37     234 ..      11     235 .. 0.90

  Alignments for each domain:
  == domain 1  score: 66.8 bits;  conditional E-value: 1.1e-22
         TPT  88 kvaVSfthtvKasePiFtvilsrlllgeklsllvylsLlpivgGvalasvtElsFnligfisAlisnltfslrnifsKkllkklkdldalnlfaiitil 186
                   +V f +++Ka  P++ vi+   l  e++s  v+ ++  + +  a+as+ E++Fn++g +   ++ ++++lr +++ kllk++ +++ ++ + +i+ +
  KOO25278.1  37 YLTVAFIQMLKAFSPAYMVIFLVCLGVEYPSRRVIACIGGLCVFTAIASAGEINFNVAGVMFMAAASISDALRLVLAQKLLKNQ-KMQLMETLYFISPI 134
                 5689********************999********************************************************5.5************* PP

         TPT 187 slllllPvallvegvlktpsllkstkvslkevl.lllllsgvlfhlynqvaymvLervspvthsvantvKrvvvIvlsvlvfknpvsllnaiGtavaiv 284
                  ll ++P+a+++e     p  l+s++ +l +v+ ++ l+sg+   + n +++ + +r+s++t      ++    +++s lv+++++s l+a+G +  ++
  KOO25278.1 135 CLLWMVPAAIFTEL----PGALRSNSLALMRVYpFTFLASGLAGCFVNLTSFLLTKRTSAMTLKTLTMARNGGLVIVSALVMGEQISNLEAFGYTGLLI 229
                 *************9....888888876655665388999************************99999999999999****************887666 PP

         TPT 285 GvflY 289
                    lY
  KOO25278.1 230 CFALY 234
                 66666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (286 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       578  (0.0322383); expected 358.6 (0.02)
Passed bias filter:                      308  (0.0171789); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.23s 00:00:00.66 Elapsed: 00:00:00.39
# Mc/sec: 2210.34
//
Query:       KOO25279.1  [L=411]
Description: heat shock protein DNAj [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.1e-16   59.8   0.0    4.9e-05   23.4   0.0    5.3  5  PPR_2     PPR repeat family
    4.7e-13   49.1   0.1    1.1e-12   47.9   0.0    1.7  2  DnaJ      DnaJ domain
    1.9e-11   43.8   0.0     0.0011   19.0   0.0    4.1  4  PPR_3     Pentatricopeptide repeat domain
    1.1e-05   24.9   0.0      0.002   17.5   0.0    2.2  2  PPR_long  Pentacotripeptide-repeat region of PRORP
    5.1e-05   23.2  10.0       0.66   10.3   0.0    5.3  6  PPR       PPR repeat
    5.8e-05   22.7   0.5       0.21   11.3   0.0    3.8  4  PPR_1     PPR repeat
     0.0049   16.3   0.1      0.016   14.6   0.1    1.8  2  PALP      Pyridoxal-phosphate dependent enzyme


Domain annotation for each model (and alignments):
>> PPR_2  PPR repeat family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.4   0.0   1.9e-08   4.9e-05       5      48 ..     146     189 ..     145     190 .. 0.94
   2 !   14.4   0.1   1.3e-05     0.033      15      49 ..     206     240 ..     204     241 .. 0.88
   3 !   12.5   0.1   5.1e-05      0.13       1      31 [.     227     257 ..     227     263 .. 0.92
   4 !    8.2   0.0    0.0011       2.8       5      47 ..     267     314 ..     263     317 .. 0.76
   5 ?    1.2   0.0      0.17   4.3e+02      24      47 ..     331     354 ..     325     357 .. 0.82

  Alignments for each domain:
  == domain 1  score: 23.4 bits;  conditional E-value: 1.9e-08
       PPR_2   5 tyNtlIsglckkgkveeAfklfneMkkrglePnsyTysilikgl 48 
                 +y + I ++++++++ eA+++++eM+  g +P+   y +li+g+
  KOO25279.1 146 SYASTIYHHLRREELAEALEVLEEMRLEGEQPSHAVYEMLIRGC 189
                 5778899************************************6 PP

  == domain 2  score: 14.4 bits;  conditional E-value: 1.3e-05
       PPR_2  15 kkgkveeAfklfneMkkrglePnsyTysilikglc 49 
                 + + v+  ++l+ +M+k g +P+  Ty  l++++ 
  KOO25279.1 206 TVNLVQRVLELWGDMEKMGRKPDYLTYIELMRAFG 240
                 66788999*******************99999875 PP

  == domain 3  score: 12.5 bits;  conditional E-value: 5.1e-05
       PPR_2   1 pdvvtyNtlIsglckkgkveeAfklfneMkk 31 
                 pd  ty  l+ ++ k g+  +A++lf++M +
  KOO25279.1 227 PDYLTYIELMRAFGKGGATAQALQLFEKMCN 257
                 78889************************75 PP

  == domain 4  score: 8.2 bits;  conditional E-value: 0.0011
       PPR_2   5 tyNtlIsglckkgkveeAfklf...neMkk..rglePnsyTysilikg 47 
                 ++Nt+   ++ +g+++eA++lf   +eM+k  ++ + +++++s l+++
  KOO25279.1 267 AFNTIYEVCVLNGAYSEALRLFgehEEMRKslWKPRFTPVSFSLLLTA 314
                 799999999*************66667888333445577777777766 PP

  == domain 5  score: 1.2 bits;  conditional E-value: 0.17
       PPR_2  24 klfneMkkrglePnsyTysilikg 47 
                 +l++eM ++g+ P + T   l+++
  KOO25279.1 331 RLLHEMGSHGVLPRVETCERLVRS 354
                 799********9988887666665 PP

>> DnaJ  DnaJ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.9   0.0   4.2e-16   1.1e-12       3      51 ..      46      93 ..      44     105 .. 0.89
   2 ?   -3.6   0.1       5.1   1.3e+04      45      54 ..     159     168 ..     158     170 .. 0.82

  Alignments for each domain:
  == domain 1  score: 47.9 bits;  conditional E-value: 4.2e-16
                HHHHTSSTTG-HHHHHHHHHHHHHHHSTTTSCCHHHHHHHHHHHHHHHH CS
        DnaJ  3 YeiLgvskdasedeIkkaYrklalkyHPDknpkdpeaeekFkeineAye 51
                ++ Lg+++da+ +++k aY+kla+++HPD++  +p+a+e+F  i +Ay+
  KOO25279.1 46 HATLGLPPDATLEQVKGAYYKLAMMHHPDRS-TEPDAAERFAAIGAAYN 93
                678****************************.9***************7 PP

  == domain 2  score: -3.6 bits;  conditional E-value: 5.1
                 HHHHHHHHHT CS
        DnaJ  45 eineAyevLs 54 
                 e++eA evL 
  KOO25279.1 159 ELAEALEVLE 168
                 7899999996 PP

>> PPR_3  Pentatricopeptide repeat domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.8   0.0   0.00066       1.7      30      60 ..     159     189 ..     147     190 .. 0.85
   2 !   19.0   0.0   4.4e-07    0.0011       4      61 ..     218     276 ..     215     278 .. 0.92
   3 ?    4.1   0.0      0.02        51      18      58 ..     268     313 ..     262     318 .. 0.77
   4 !   10.6   0.0   0.00018      0.47       1      39 [.     331     369 ..     331     376 .. 0.95

  Alignments for each domain:
  == domain 1  score: 8.8 bits;  conditional E-value: 0.00066
       PPR_3  30 nkklalevlermkkkgikPtvvtyNailgvi 60 
                 ++  alevle+m+ +g +P+   y +++  +
  KOO25279.1 159 ELAEALEVLEEMRLEGEQPSHAVYEMLIRGC 189
                 56789*********************99766 PP

  == domain 2  score: 19.0 bits;  conditional E-value: 4.4e-07
       PPR_3   4 remerkgikldvvtYthLLtayanagnkklalevlerm.kkkgikPtvvtyNailgvig 61 
                  +me+ g k+d  tY+ L++a+ + g    al+ +e+m   +++ P    +N i +v++
  KOO25279.1 218 GDMEKMGRKPDYLTYIELMRAFGKGGATAQALQLFEKMcNSVRLLPEQRAFNTIYEVCV 276
                 69************************************5569************99997 PP

  == domain 3  score: 4.1 bits;  conditional E-value: 0.02
       PPR_3  18 YthLLtayanagnkklalevl...ermkkkgikP..tvvtyNailg 58 
                 ++++ ++++++g +  al+ +   e+m+k   kP  t v+++ +l 
  KOO25279.1 268 FNTIYEVCVLNGAYSEALRLFgehEEMRKSLWKPrfTPVSFSLLLT 313
                 89999***************94445688887888444566766665 PP

  == domain 4  score: 10.6 bits;  conditional E-value: 0.00018
       PPR_3   1 silremerkgikldvvtYthLLtayanagnkklalevle 39 
                 ++l+em   g+ + v t+  L + +  + ++++a +v++
  KOO25279.1 331 RLLHEMGSHGVLPRVETCERLVRSCLEVDELEIAQQVVQ 369
                 69***********************************97 PP

>> PPR_long  Pentacotripeptide-repeat region of PRORP
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5   0.0   7.7e-07     0.002      21     130 ..     154     270 ..     143     287 .. 0.85
   2 !    5.2   0.0    0.0046        12      43     125 ..     302     382 ..     269     386 .. 0.69

  Alignments for each domain:
  == domain 1  score: 17.5 bits;  conditional E-value: 7.7e-07
                 HHHHT-HHHHHHHHHHHHHSSS---HHHHHHHHHHHHHC.HCSTTTHHHH......HHHHHHHHHHHHHTT----HHHHHHHHHHHHHTT-HHHHHHHH CS
    PPR_long  21 CskekDaaaAlelydkavaegvrlaqyhynvllylcskaeaaseskknka......largfevfeamkakgvspnEatvtalarlaaakedgdlafelv 113
                   +++ +a+Ale+ +++  eg + ++  y++l+  c+ a +  +  ++        ++r++e + +m++ g +p   t+  l+r   + + + +a +l 
  KOO25279.1 154 HLRREELAEALEVLEEMRLEGEQPSHAVYEMLIRGCTIAMRRPSIGEQPDhltvnlVQRVLELWGDMEKMGRKPDYLTYIELMRAFGKGGATAQALQLF 252
                 568999*******************************998655443332234556699***************************************** PP

                 HHHH.HH-S---HHHHHH CS
    PPR_long 114 keme.kagvsPrLRsyaP 130
                 ++m  ++ + P  R+++ 
  KOO25279.1 253 EKMCnSVRLLPEQRAFNT 270
                 ***64789****999975 PP

  == domain 2  score: 5.2 bits;  conditional E-value: 0.0046
                 ---HHHHHHHHHHHHHC.HCSTTTHHHHHHHHHHHHHHHHHTT----HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-..S---H CS
    PPR_long  43 rlaqyhynvllylcskaeaaseskknkalargfevfeamkakgvspnEatvtalarlaaakedgdlafelvkemekag..vsPrL 125
                 r+++ +++ ll   ++ae+  e      +++  +  ++m ++gv p   t   l+r +   ++ + a ++v+  ++ag  ++P+L
  KOO25279.1 302 RFTPVSFSLLL--TAAAEQGPELA--ARVRHLPRLLHEMGSHGVLPRVETCERLVRSCLEVDELEIAQQVVQLAARAGhtIDPKL 382
                 44444444443..33344443333..4578888999***********99**********************99887764477998 PP

>> PPR  PPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.9   0.1    0.0016       4.1      11      30 ..     155     174 ..     146     175 .. 0.82
   2 ?   -3.4   0.0       6.3   1.6e+04       4      10 ..     183     189 ..     181     190 .. 0.57
   3 ?    2.7   0.1      0.07   1.8e+02      15      30 ..     209     224 ..     207     225 .. 0.87
   4 !   10.3   0.0   0.00026      0.66       5      27 ..     234     256 ..     230     258 .. 0.89
   5 ?    5.0   0.0     0.013        34       3      25 ..     268     290 ..     266     295 .. 0.86
   6 ?   -1.9   0.0       2.1   5.3e+03      22      31 .]     332     341 ..     331     341 .. 0.86

  Alignments for each domain:
  == domain 1  score: 7.9 bits;  conditional E-value: 0.0016
         PPR  11 cknGkleeAlelfkeMkekG 30 
                  +  +l eAle+++eM+ +G
  KOO25279.1 155 LRREELAEALEVLEEMRLEG 174
                 5677889*********9887 PP

  == domain 2  score: -3.4 bits;  conditional E-value: 6.3
         PPR   4 nslIsgy 10 
                   lI+g+
  KOO25279.1 183 EMLIRGC 189
                 4566665 PP

  == domain 3  score: 2.7 bits;  conditional E-value: 0.07
         PPR  15 kleeAlelfkeMkekG 30 
                 +++ +lel+ +M+++G
  KOO25279.1 209 LVQRVLELWGDMEKMG 224
                 57789*********98 PP

  == domain 4  score: 10.3 bits;  conditional E-value: 0.00026
         PPR   5 slIsgycknGkleeAlelfkeMk 27 
                  l+++++k G    Al+lf++M 
  KOO25279.1 234 ELMRAFGKGGATAQALQLFEKMC 256
                 59********************6 PP

  == domain 5  score: 5.0 bits;  conditional E-value: 0.013
         PPR   3 ynslIsgycknGkleeAlelfke 25 
                 +n++  +++ nG ++eAl+lf e
  KOO25279.1 268 FNTIYEVCVLNGAYSEALRLFGE 290
                 6666678999***********87 PP

  == domain 6  score: -1.9 bits;  conditional E-value: 2.1
         PPR  22 lfkeMkekGi 31 
                 l++eM ++G+
  KOO25279.1 332 LLHEMGSHGV 341
                 899**99996 PP

>> PPR_1  PPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.2   0.9    0.0032       8.1      22      34 .]     159     171 ..     156     171 .. 0.87
   2 ?   -1.5   0.0      0.83   2.1e+03       4      16 ..     176     188 ..     173     189 .. 0.82
   3 !   11.3   0.0   8.3e-05      0.21       2      33 ..     224     255 ..     223     256 .. 0.95
   4 ?   -1.7   0.0      0.97   2.5e+03      21      32 ..     279     290 ..     277     290 .. 0.79

  Alignments for each domain:
  == domain 1  score: 6.2 bits;  conditional E-value: 0.0032
                 -HHHHHHHHHHHH CS
       PPR_1  22 rvdeAfelfdeMe 34 
                 ++ eA+e+++eM+
  KOO25279.1 159 ELAEALEVLEEMR 171
                 799*********7 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 0.83
                 ---HHHHHHHHHH CS
       PPR_1   4 kPdvvTYNtLIdG 16 
                 +P    Y +LI G
  KOO25279.1 176 QPSHAVYEMLIRG 188
                 788899*****99 PP

  == domain 3  score: 11.3 bits;  conditional E-value: 8.3e-05
                 S----HHHHHHHHHHHHHTS-HHHHHHHHHHH CS
       PPR_1   2 GlkPdvvTYNtLIdGlCkaGrvdeAfelfdeM 33 
                 G kPd  TY  L  ++ k G    A++lf++M
  KOO25279.1 224 GRKPDYLTYIELMRAFGKGGATAQALQLFEKM 255
                 779***************************** PP

  == domain 4  score: -1.7 bits;  conditional E-value: 0.97
                 S-HHHHHHHHHH CS
       PPR_1  21 GrvdeAfelfde 32 
                 G   eA++lf e
  KOO25279.1 279 GAYSEALRLFGE 290
                 56689*****76 PP

>> PALP  Pyridoxal-phosphate dependent enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.0      0.54   1.4e+03     217     252 ..     236     271 ..     200     284 .. 0.58
   2 !   14.6   0.1   6.2e-06     0.016     230     280 ..     345     398 ..     295     405 .. 0.82

  Alignments for each domain:
  == domain 1  score: -1.6 bits;  conditional E-value: 0.54
                 .CCSTCSCGTTCCHHHHSEEEEEEEEEEHHHHHHHH CS
        PALP 217 adglavgspselafelldrlvdeivtvsdeealeam 252
                 + + + g ++++a++l+++    +  ++++ a+ ++
  KOO25279.1 236 MRAFGKGGATAQALQLFEKMCNSVRLLPEQRAFNTI 271
                 333334445555555555555555555555555555 PP

  == domain 2  score: 14.6 bits;  conditional E-value: 6.2e-06
                 HHHHSEEEEEEEEEEHHHHHHHHHHHHHHHSB-B-HHHHHHHHHH...HHHHHH CS
        PALP 230 felldrlvdeivtvsdeealeamrllarregivvepssaaalaal...klreag 280
                 +e ++rlv  + +v++ e+++ +++la r+g+ ++p  aaa+aa    +++e++
  KOO25279.1 345 VETCERLVRSCLEVDELEIAQQVVQLAARAGHTIDPKLAAAVAAGgwgQAQERE 398
                 56789999999*************************777777776566555554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (411 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       489  (0.0272742); expected 358.6 (0.02)
Passed bias filter:                      420  (0.0234257); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.49u 0.24s 00:00:00.73 Elapsed: 00:00:00.38
# Mc/sec: 3254.03
//
Query:       KOO25280.1  [L=157]
Description: hypothetical protein Ctob_009247 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
       0.15   11.8   0.0       0.27   11.0   0.0    1.4  1  Sensor_TM1  Sensor N-terminal transmembrane domain


Domain annotation for each model (and alignments):
>> Sensor_TM1  Sensor N-terminal transmembrane domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   1.5e-05      0.27      25      50 ..     118     143 ..     115     147 .. 0.90

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 1.5e-05
  Sensor_TM1  25 vvLvaGiLYlnqfRdgLidarvesLl 50 
                 + L +G+++   f ++L+da+v+s +
  KOO25280.1 118 MTLAVGVFRWARFNANLVDAKVQSFA 143
                 56999******************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (157 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       278  (0.0155056); expected 358.6 (0.02)
Passed bias filter:                      231  (0.0128842); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.34u 0.23s 00:00:00.57 Elapsed: 00:00:00.36
# Mc/sec: 1320.13
//
Query:       KOO25281.1  [L=474]
Description: methyltransferase nsun5-like protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    7.4e-26   91.0   0.0    1.1e-25   90.5   0.0    1.3  1  Methyltr_RsmB-F  16S rRNA methyltransferase RsmB/F
    3.3e-05   24.1   0.0    5.5e-05   23.3   0.0    1.3  1  FtsJ             FtsJ-like methyltransferase


Domain annotation for each model (and alignments):
>> Methyltr_RsmB-F  16S rRNA methyltransferase RsmB/F
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   90.5   0.0   1.2e-29   1.1e-25       2     199 ..     149     353 ..     148     354 .. 0.80

  Alignments for each domain:
  == domain 1  score: 90.5 bits;  conditional E-value: 1.2e-29
                      HHH---TT-EEEESS-TTSHHHHHHHHHTTTTSEEEEEESSCCCHHHHHHHHHHTT--SEEEEES-CTCCHHHHCC.....EEEEEEEE--CCG CS
  Methyltr_RsmB-F   2 llLapqeeetilDlcaaPGgKTthiaelmknkgtvvAvdankeRlkrvaenlkrLgvtntivleaDarkidkvlgg...elfDriLlDaPCsgt 92 
                      ++Lap  + t++D caaPG KT h+a++m+nkg+++A + n +R + +++ ++  g   + + ++     d    +   + + ++LlD  Cs+ 
       KOO25281.1 149 VALAPPAGATVIDTCAAPGNKTCHLAAVMENKGRIFAFELNPRRCELLKQMMQLKGASIVRCKQGS--FLDASPDDpqyREVSHVLLDPSCSSS 240
                      789***********************************************9999998855555554..3333333333478************* PP

                      GGTTT-TCHHHH--HHHHHHHHHHHHHHHHHHCCCEEEEEEEEEEES--STTTTHHHHHHHHHH-TTEEEES.SBSTTSTTSSECEEC...... CS
  Methyltr_RsmB-F  93 gvirrdpdvklrrkekdiaqlaklqkellsaaidllkkgGvlvYsTCsvlveEneevieeaLkkredvelve.telsepkglklgeea...... 179
                      g+ +r p+     ++  + +la+ q el+  a++   +   + YsTCs++ +Eneev+ ++L+ + + el+  +++   +g  +  +       
       KOO25281.1 241 GM-SRTPET----DPGRLRELAENQLELVLHAMKFP-AVQAICYSTCSIHEQENEEVVRAILRGQSEFELDVaMPWWLRRGHMIADDGkgggye 328
                      96.789998....9**************99988764.45579***************************9641455544444444444556778 PP

                      ......TSEEE-TTTTSS-SEEEEEE CS
  Methyltr_RsmB-F 180 ......gtlrllPhtenkdgffiakl 199
                              ++ +P+   + gff+a++
       KOO25281.1 329 aeiarsVVRTAYPDD-RTIGFFLARF 353
                      888875566667765.6678888876 PP

>> FtsJ  FtsJ-like methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.3   0.0   6.2e-09   5.5e-05      21     126 ..     155     269 ..     136     305 .. 0.80

  Alignments for each domain:
  == domain 1  score: 23.3 bits;  conditional E-value: 6.2e-09
                 TT-EEEECT-TTSHHHHHHCCT.T.-SEEEEEESSSS......HHH..TTEEEE...CS-CCCSSHHHHHCHCHHHSSEEEEEE--S-SS-CHHHHHHH CS
        FtsJ  21 pgktvvDlgaaPGgwsqvllqrlgakgkvvavDlqpm......apl..pgvtti...qgditdpetiekikealserkvdlvvsDgapdvsgvhdldey 108
                  g tv+D +aaPG+ +  l+  +++kg+++a+ l+p       +++  +g +++   qg ++d +  +        r+v+ v+ D + + sg++ ++e+
  KOO25281.1 155 AGATVIDTCAAPGNKTCHLAAVMENKGRIFAFELNPRrcellkQMMqlKGASIVrckQGSFLDASPDDPQY-----REVSHVLLDPSCSSSGMSRTPET 248
                 5789*******************999*********998888863335566666666699999999999444.....479********9****9988888 PP

                 HH...CCCCHHHHCCHCCCCE CS
        FtsJ 109 lq...sqLllaalelalkllk 126
                       +L++++lel l+ +k
  KOO25281.1 249 DPgrlRELAENQLELVLHAMK 269
                 776646999999999887776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (474 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       716  (0.0399353); expected 358.6 (0.02)
Passed bias filter:                      420  (0.0234257); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.51u 0.23s 00:00:00.74 Elapsed: 00:00:00.38
# Mc/sec: 3719.06
//
Query:       KOO25282.1  [L=372]
Description: hypothetical protein Ctob_009248 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.1e-37  128.7   0.1    3.4e-37  128.0   0.1    1.3  1  Ribosomal_L4     Ribosomal protein L4/L1 family
      4e-20   71.6   5.2    1.2e-19   70.2   4.0    2.1  2  Ribos_L4_asso_C  60S ribosomal protein L4 C-terminal domain


Domain annotation for each model (and alignments):
>> Ribosomal_L4  Ribosomal protein L4/L1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  128.0   0.1   3.8e-41   3.4e-37       3     190 ..      24     261 ..      22     263 .. 0.94

  Alignments for each domain:
  == domain 1  score: 128.0 bits;  conditional E-value: 3.8e-41
                   E-HHHHSS---HHHHHHHHHHHHHSS-EE-----.-TTTSS---S-SS-SSSSSS---S-TT............STTSTT---SS---S.EEHHHHH CS
  Ribosomal_L4   3 LspkvFaapirrdlihravvaylanrrqgtastk.arsevsgsgrklwkQKGtGrARvgsir............spiargGgvahgpkperdystkl 86 
                   L p+vF ap+r+d++h ++ ++  n+rq +  +k a+++ s+   ++++  G++ +R+++++             +++rgG+++ ++k++r++++k+
    KOO25282.1  24 L-PAVFMAPVRPDVVHFVHSMMALNKRQAHCVSKyAGKTPSA--TSWGT--GRAVSRIPRVSgggthrsgqgafGNMCRGGRMFAPTKTWRKWHRKI 115
                   7.9*******************************99999999..5****..********************************************** PP

                   HHHHHHHHHHHHHHHHHHTT-EEEES.---..-S...........S--HHHHHHHHHHTT-..........................TTSSEEEEES CS
  Ribosomal_L4  87 nkKvrrlAlrsaLsakakqglllvvd.nle.ple...........esktkelvellkklgl..........................ksksvLivvs 144
                   n  ++r+A++sa++a     l+++++  ++ + e           + kt+ +v+llkklg+                          ++k++Liv++
    KOO25282.1 116 NVTQKRYAVASAVAASGVPALVMARGhRIDaTPEgplvvgsaveqITKTSAAVALLKKLGAyadvektlasktmragkgkmrgrrfvQRKGPLIVYK 212
                   **************************633423337777999999999***********999999999999999999********************9 PP

                   SSSCHHHHHHTT-TTEEEEESTT--CHHHHHSSE....EEEEHHHHHHHH CS
  Ribosomal_L4 145 ekdenlvlaarnlpgvevieveslnvydllkadk....vvitksavekle 190
                   + d +l +a+rn+pgve+++v  ln+++l+++ +    +++t+sa+++l+
    KOO25282.1 213 T-DGGLTRAFRNIPGVELANVSALNLLQLAPGGHvgrfCIWTESAFSSLD 261
                   7.********************************************9997 PP

>> Ribos_L4_asso_C  60S ribosomal protein L4 C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.3   0.0      0.13   1.1e+03      26      46 ..     187     208 ..     170     212 .. 0.70
   2 !   70.2   4.0   1.3e-23   1.2e-19       3      75 ..     281     352 ..     280     353 .. 0.95

  Alignments for each domain:
  == domain 1  score: -0.3 bits;  conditional E-value: 0.13
  Ribos_L4_asso_C  26 svlrpakkekkkkr.vqkkNPL 46 
                      + +r+ k++ + +r vq+k PL
       KOO25282.1 187 KTMRAGKGKMRGRRfVQRKGPL 208
                      4567777766667789999988 PP

  == domain 2  score: 70.2 bits;  conditional E-value: 1.3e-23
  Ribos_L4_asso_C   3 ynLPrpkmtnaDlsRiinSdeiqsvlrpakkekkkkrvqkkNPLknkqvmlrLNPyakvlrraallaqkkrkk 75 
                      y++P+p+++n+DlsR+inSde+qs ++++k   +  +v+k NPLknk+vm  L+P a + r+aa++aq+++kk
       KOO25282.1 281 YRMPTPMLSNSDLSRLINSDEVQSKVNAPKP-GQAPKVLKINPLKNKAVMDALDPSAPSKRKAAAEAQAAKKK 352
                      9****************************55.78889******************************999886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (372 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       472  (0.0263261); expected 358.6 (0.02)
Passed bias filter:                      312  (0.017402); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.42u 0.21s 00:00:00.63 Elapsed: 00:00:00.36
# Mc/sec: 3086.49
//
Query:       KOO25283.1  [L=177]
Description: hypothetical protein Ctob_009250 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.4e-06   27.2   0.3    2.5e-05   24.7   0.3    1.9  1  PolyA_pol  Poly A polymerase head domain


Domain annotation for each model (and alignments):
>> PolyA_pol  Poly A polymerase head domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.7   0.3   1.4e-09   2.5e-05       3      96 ..      49     171 ..      47     173 .. 0.53

  Alignments for each domain:
  == domain 1  score: 24.7 bits;  conditional E-value: 1.4e-09
                 EETHHHHHHHTT---CEEEEEEC..........S-HHHHHHHHHHHHT-EEEEETTTTCCCCEECCEE.EEECCEECEEEEEE---SSHHH........ CS
   PolyA_pol   3 lvGGaVRDlllgkepkDvDlatd..........aapeelakllrkkvkeallsgeefqtiavlekkql.levatfRlekdesdarnpesekste..... 85 
                 + GG VRDlllgk+p+D+Dl +            +  +  +++ ++++    s  ++ ti   ++k++ +++a++ l                      
  KOO25283.1  49 VNGGYVRDLLLGKKPDDLDLSLClracaaevtfDSVMKGIEAFVNRRPDLNVSSVNVTTILSDTSKDKnVDTAKAHLL---------------Vgsppe 132
                 67******************9985555555444222222333444444433334444444333333223333333222...............122233 PP

                 ............................HHHHHHCTSSB CS
   PolyA_pol  86 ............................sleeDlkrRDf 96 
                                             ++e+D+ rR +
  KOO25283.1 133 rievdfmptigeeqydefdrvplrdvrgTAEQDALRREL 171
                 333333333444444456677777777799999999976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (177 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       259  (0.0144459); expected 358.6 (0.02)
Passed bias filter:                      242  (0.0134977); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.34u 0.25s 00:00:00.59 Elapsed: 00:00:00.38
# Mc/sec: 1413.76
//
Query:       KOO25284.1  [L=149]
Description: hypothetical protein Ctob_009251 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (149 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       395  (0.0220313); expected 358.6 (0.02)
Passed bias filter:                      337  (0.0187964); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.22s 00:00:00.60 Elapsed: 00:00:00.38
# Mc/sec: 1182.53
//
Query:       KOO25285.1  [L=220]
Description: pkhd domain-containing transmembrane protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.9e-12   46.9   0.1    6.3e-12   46.2   0.1    1.3  1  2OG-FeII_Oxy_3  2OG-Fe(II) oxygenase superfamily
      6e-06   26.7   0.0    8.6e-06   26.2   0.0    1.3  1  2OG-FeII_Oxy    2OG-Fe(II) oxygenase superfamily
     0.0018   18.9   0.0     0.0029   18.2   0.0    1.3  1  2OG-FeII_Oxy_4  2OG-Fe(II) oxygenase superfamily
     0.0069   15.9   0.0      0.011   15.2   0.0    1.4  1  Oxygenase-NA    Oxygenase, catalysing oxidative methylation o


Domain annotation for each model (and alignments):
>> 2OG-FeII_Oxy_3  2OG-Fe(II) oxygenase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.2   0.1   1.4e-15   6.3e-12      14      95 ..      85     161 ..      78     162 .. 0.85

  Alignments for each domain:
  == domain 1  score: 46.2 bits;  conditional E-value: 1.4e-15
                     EE-SS----TT.-.EEEEEEEEE.....ET-B--EEE..........---TT-EEEEE-..B-TEEE--B.-SS-EEEEEEEE CS
  2OG-FeII_Oxy_3  14 pHvDnfekeegsgqrrltvllyLne.keseeGGelelyekdkeavkikpkkgrlvlFesdellpHevlpvtkggeRlsltgwi 95 
                     +HvD      + ++  ++++lyLn+  + + GG+++++++ +e++ ++p++gr+vlF s+  + H+v +vt+g +R++l+ w+
      KOO25285.1  85 AHVDRA----NMSSYDYSAVLYLNTqGRGFAGGDFVFVDE-HEDEVVEPRAGRCVLFTSGFEHLHRVAKVTRG-SRFVLASWY 161
                     799975....55889********985555*****999554.5888899************9999******886.********8 PP

>> 2OG-FeII_Oxy  2OG-Fe(II) oxygenase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.2   0.0   1.9e-09   8.6e-06      23     100 ..      92     162 ..      68     163 .. 0.79

  Alignments for each domain:
  == domain 1  score: 26.2 bits;  conditional E-value: 1.9e-09
                   EEEEESSSEEEEEEE-TT---EEEETEEEE---.-TTEEEEEE-HHHHHHTTS-S----EEE----GTGSEEEEEEEE- CS
  2OG-FeII_Oxy  23 gahtdaslltillqddvgglevfkdgkwlrvpp.vdnslivniGdallflsngryksvlHrVlpvnegerRvsiayfie 100
                     ++d+s + +l++    g+     g++++v++ +d+++++ +G  +lf s+    ++lHrV +v++g+ R+ +a +++
    KOO25285.1  92 MSSYDYSAVLYLNTQG-RGFA---GGDFVFVDEhEDEVVEPRAGRCVLFTSGF---EHLHRVAKVTRGS-RFVLASWYT 162
                   4589999999998888.5563...466666666589*********65555555...7**********99.*******85 PP

>> 2OG-FeII_Oxy_4  2OG-Fe(II) oxygenase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.2   0.0   6.4e-07    0.0029      13      92 ..      84     161 ..      77     162 .. 0.81

  Alignments for each domain:
  == domain 1  score: 18.2 bits;  conditional E-value: 6.4e-07
  2OG-FeII_Oxy_4  13 lnHdDvl.egeRrvayilyleeeWkeddGGaLllsddegdvtksivPkwnqlvlFevkeshsvaevasvaekeRlsisgWf 92 
                     ++H D   +++   + +lyl+++ +   GG   + d+++d  + + P+ ++ vlF++  + ++++va+v++ +R+ ++ W+
      KOO25285.1  84 VAHVDRAnMSSYDYSAVLYLNTQGRGFAGGDFVFVDEHED--EVVEPRAGRCVLFTSGFE-HLHRVAKVTRGSRFVLASWY 161
                     578888536888899******************9998777..5799***********544.3555666667899**99997 PP

>> Oxygenase-NA  Oxygenase, catalysing oxidative methylation of damaged DNA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.0   2.5e-06     0.011      75     144 ..      84     152 ..      61     159 .. 0.78

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 2.5e-06
  Oxygenase-NA  75 aLHqdlyGelvFPlqvvilLsepgedftGGefvlveqrpraqsraevvkleqGdalifatr....eRpvkgkrg 144
                     H d      +   +v+ L+++g+ f GG+fv+v+++       evv+ + G+ ++f++     +R +k +rg
    KOO25285.1  84 VAHVDRANMSSYDYSAVLYLNTQGRGFAGGDFVFVDEHE-----DEVVEPRAGRCVLFTSGfehlHRVAKVTRG 152
                   55666666667777899******************9875.....589999999999999752222455555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (220 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       255  (0.0142228); expected 358.6 (0.02)
Passed bias filter:                      226  (0.0126053); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.38u 0.22s 00:00:00.60 Elapsed: 00:00:00.37
# Mc/sec: 1785.22
//
Query:       KOO25286.1  [L=74]
Description: hypothetical protein Ctob_009253 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (74 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       544  (0.0303419); expected 358.6 (0.02)
Passed bias filter:                      416  (0.0232026); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.25s 00:00:00.61 Elapsed: 00:00:00.40
# Mc/sec: 554.36
//
Query:       KOO25287.1  [L=457]
Description: histone-lysine n-methyltransferase ehmt1-like isoform 1 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.8e-08   34.9   5.1    1.6e-06   28.7   0.0    3.7  2  SET             SET domain
  ------ inclusion threshold ------
      0.076   11.2   0.8        0.1   10.8   0.8    1.1  1  BT1             BT1 family
        0.3    9.9   5.6       0.44    9.4   5.6    1.1  1  Phage_min_cap2  Phage minor capsid protein 2


Domain annotation for each model (and alignments):
>> SET  SET domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.4   2.7      0.13   7.7e+02      57     112 ..      52     113 ..      10     313 .. 0.67
   2 !   28.7   0.0   2.6e-10   1.6e-06       1     166 [.     319     431 ..     319     431 .. 0.64

  Alignments for each domain:
  == domain 1  score: 0.4 bits;  conditional E-value: 0.13
                 HHHTTSSHHHHHHHHHHHHHHHHHHTHHHHHHHXTTTS.....X....XXHCCCCC..HCCCHEEEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.....x....xxxxxxxx..xxxxxxxxx RF
         SET  57 kasastllqklakdqkqaekedtdaalkasskaesdln.....a....skpeagaf..saiagysid 112
                 +++    + +++++ ++a++++ + +++++   e+ l+     +           +  ++  +y+++
  KOO25287.1  52 AEEEADAGFTSEDEKRKAKYQRIMERNVRKDAREKELVqqgqpMsvssK-----ITnhEQKEEYCME 113
                 4444444444455555555555555555555555555443333132221.....1122333444444 PP

  == domain 2  score: 28.7 bits;  conditional E-value: 2.6e-10
                 SCEEEESSXBXTTXEEEEEE.ECCEECHHHHHHHHHH.....HTEEEEEXGGXXGGSXHHHHHHHTTSSHHHHHHHHHHHHHHHHHHTHHHHHHHXTTT CS
                 xxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxx.....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
         SET   1 GrGvfAtedIpkgeficeyp.eeiiltkdeadksele.....aylfslpeapknlaftkelakasastllqklakdqkqaekedtdaalkasskaesdl 93 
                 G++++++ +I+k++f++ey+ e+i   ++e +k+         y+++++                                                  
  KOO25287.1 319 GWCLRTLTPIKKDSFVMEYVaERISPFRAEERKR--DmpdveTYIMDMD-------------------------------------------------- 365
                 9*******************85333333333333..2357998888866.................................................. PP

                 SXXXHCCCCCHCCCHEEEETEEEEEECCCGTTGGGCEEXSSSSEEEEEEEE........TTSSEEEEEESSXBXTTEEEEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx........xxxxxxxxxxxxxxxxxxxxxx RF
         SET  94 naskpeagafsaiagysidaralksgngagplarflNHsCdpNcnltvqnv........lrgprvavfAtrdIkkGeElti 166
                     p+a+ f     + +d  al   n+a     f    C+    + ++ +        +r p+v++fAtrdI++ eEl++
  KOO25287.1 366 ---LPGARGF-----MHLD--ALGVRNHA----AFASFACSKKF-ANIRKKalltnhwdSRVPHVGFFATRDIEALEELCY 431
                 ...1333333.....3455..66777776....55555664433.222222334444556*******************97 PP

>> BT1  BT1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.8   1.7e-05       0.1     167     219 ..      32      99 ..      27     136 .. 0.64

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 1.7e-05
         BT1 167 tvvvflfnwygerkn.rv...eraeDallikeelrkereslglpakeepdgsrdna...........d 219
                 ++ ++l+n+++er+  r    e  +Da + +e+ +++++  ++ + + +++ r+++           +
  KOO25287.1  32 ECCLYLLNLFEERRRkRQldaEEEADAGFTSEDEKRKAKYQRIMERNVRKDAREKElvqqgqpmsvsS 99 
                 6899********87515511144568999999888888877755555553555444443344443330 PP

>> Phage_min_cap2  Phage minor capsid protein 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   5.6   7.4e-05      0.44     297     344 ..      47      93 ..      37     112 .. 0.72

  Alignments for each domain:
  == domain 1  score: 9.4 bits;  conditional E-value: 7.4e-05
  Phage_min_cap2 297 lkeydekenekvngkeydyyeatqkQRalEraiRkqKreleaaekagd 344
                     +++ d++e+++    + d+ ++ + QR +Er++Rk  re+e+ ++  +
      KOO25287.1  47 KRQLDAEEEADAGFTSEDEKRKAKYQRIMERNVRKDAREKELVQQG-Q 93 
                     456677777777456778889999*******************996.3 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (457 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       963  (0.0537119); expected 358.6 (0.02)
Passed bias filter:                      382  (0.0213063); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.53u 0.24s 00:00:00.77 Elapsed: 00:00:00.41
# Mc/sec: 3375.05
//
Query:       KOO25288.1  [L=440]
Description: ring-hydroxylating large terminal subunit [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.9e-21   74.5   0.0    9.1e-21   73.6   0.0    1.4  1  Rieske    Rieske [2Fe-2S] domain
  ------ inclusion threshold ------
      0.012   15.5   0.0      0.071   13.1   0.0    2.3  2  Rieske_2  Rieske-like [2Fe-2S] domain


Domain annotation for each model (and alignments):
>> Rieske  Rieske [2Fe-2S] domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   73.6   0.0     1e-24   9.1e-21       1      83 [.      94     175 ..      94     186 .. 0.96

  Alignments for each domain:
  == domain 1  score: 73.6 bits;  conditional E-value: 1e-24
                 CEEEEEEGGGC-TTCEEEEEETTEEEEEEE-TTS-EEEEESC-TTTT-BCGGSEEETT.EEE-TTT--EEETTSBEEE-TTHH CS
      Rieske   1 swvavakesdvpegdpltvkvggeplvvlrdedgevyAlsdvCtHrgaplsegkidekgvleCpcHgwaydadGkvikgPapr 83 
                 +w+ava+ s++  g++ +++++gep+v++rd +ge +++ dvC+Hr apls g++ e+gvl+C +Hgwa+ a G+++++P+ r
  KOO25288.1  94 TWYAVAHISQLVAGQVFAMRLLGEPIVLYRDAQGEAVCVRDVCPHRSAPLSMGEM-EGGVLRCFYHGWAFGAGGSCVDVPTVR 175
                 6******************************************************.888*********************976 PP

>> Rieske_2  Rieske-like [2Fe-2S] domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.0   7.9e-06     0.071       1     103 [.      94     202 ..      94     203 .. 0.83
   2 ?   -3.9   0.0       1.5   1.4e+04      60      74 ..     272     286 ..     268     287 .. 0.82

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 7.9e-06
                 SEEEEEECCCS-TTB-EEEEETTEEEEEEE-TTS-EEEEESS-TTTSSSTCCCSEEEECTTCEEEE-TTT--EEETTT-BBSS............-TTS CS
    Rieske_2   1 ewvpvckledlvketgvaalvdgkqvalfrlekeevyAidnldpaseanvlsrGlvgdkkgelvvasPlykqkfdLktGecle............deev 87 
                 +w +v+++++lv+++  a  + g+ ++l r +++e   + +++p  ++++ls G ++      v+ +  ++  f  + G+c++            ++++
  KOO25288.1  94 TWYAVAHISQLVAGQVFAMRLLGEPIVLYRDAQGEAVCVRDVCPH-RSAPLSMGEMEGG----VLRCFYHGWAFG-AGGSCVDvptvrlegktpnFSSF 186
                 5********************************************.79****9987654....777777777776.67788887777777777777777 PP

                 B-BEE-EEESTSEEEE CS
    Rieske_2  88 slkvypvrvedgkvev 103
                 s ++y+v  + g v+v
  KOO25288.1 187 SCTTYAVVEHAGMVWV 202
                 7777777777777776 PP

  == domain 2  score: -3.9 bits;  conditional E-value: 1.5
                 TTCEEEE-TTT--EE CS
    Rieske_2  60 kgelvvasPlykqkf 74 
                  ++l v sP   ++f
  KOO25288.1 272 PQRLKVRSPQAATHF 286
                 67889999*999999 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (440 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       340  (0.0189637); expected 358.6 (0.02)
Passed bias filter:                      254  (0.014167); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.46u 0.26s 00:00:00.72 Elapsed: 00:00:00.42
# Mc/sec: 3172.20
//
Query:       KOO25289.1  [L=627]
Description: glucose-methanol-choline oxidoreductase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.2e-71  241.6   0.1    1.8e-71  241.0   0.1    1.3  1  GMC_oxred_N    GMC oxidoreductase
    2.4e-32  112.4   0.3    4.5e-32  111.6   0.3    1.5  1  GMC_oxred_C    GMC oxidoreductase
    4.9e-06   26.7   0.6    1.6e-05   25.1   0.6    1.9  1  NAD_binding_8  NAD(P)-binding Rossmann-like domain
    8.8e-05   21.4   0.1    0.00013   20.8   0.1    1.2  1  HI0933_like    HI0933-like protein
    9.7e-05   21.6   0.3    0.00014   21.0   0.3    1.2  1  Lycopene_cycl  Lycopene cyclase protein
    0.00066   19.0   0.1     0.0013   18.0   0.1    1.4  1  Pyr_redox_2    Pyridine nucleotide-disulphide oxidoreductase
     0.0017   17.5   0.5     0.0036   16.4   0.5    1.6  1  FAD_binding_2  FAD binding domain
     0.0037   16.9   0.4     0.0037   16.9   0.4    1.7  2  DAO            FAD dependent oxidoreductase
  ------ inclusion threshold ------
      0.017   14.4   0.3      0.031   13.5   0.3    1.4  1  Pyr_redox_3    Pyridine nucleotide-disulphide oxidoreductase
      0.041   14.4   0.2       0.16   12.6   0.2    2.0  2  Pyr_redox      Pyridine nucleotide-disulphide oxidoreductase


Domain annotation for each model (and alignments):
>> GMC_oxred_N  GMC oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  241.0   0.1   9.8e-75   1.8e-71       2     296 .]      49     347 ..      48     347 .. 0.95

  Alignments for each domain:
  == domain 1  score: 241.0 bits;  conditional E-value: 9.8e-75
  GMC_oxred_N   2 delveggGsagsvvAaRLsedpstsvlvleaggreknrl.imvlalalklidkklntayetepekalngrrlilpaGktlGGgsvvNwsayiRtpaad 98 
                  d++++ggG+ag+v+A+RLs+  +++vlvleag + ++ l i v a  +k ++++ +++++te+ + + gr ++l +Gk+lGG+s  N + y R++ ad
   KOO25289.1  49 DYIIVGGGAAGCVMAERLSAA-EARVLVLEAGTDASRDLrIRVPAGLIKVFKSERDWDFTTEAGQGTSGRGIYLCRGKALGGSSCTNVMLYNRGSPAD 145
                  89*****************87.579*********9999999999****************************************************** PP

  GMC_oxred_N  99 ldeWeeeaglegwssdevlpafkkvetaqalesdlhgvdgrlgvtekgkeesplnkallkaaeelGlpvprdlngk..hqcGvcllgvtcrtgarqst 194
                  +++W ++ g+egw+ d vl +++k+e++  + s++hgvdg+l+v ++ ++e+ l+ a+l+aa elG++ + d+n+    q+G++ ++vt+r+g+r s+
   KOO25289.1 146 YNSWVAA-GAEGWGPDSVLHYYRKSENYVGGASQYHGVDGPLSV-SDVPYENELSTAFLRAAGELGYRRVHDFNDWsaPQEGFGRYKVTQRNGERCSA 241
                  ******9.************************************.*****************************98779******************* PP

  GMC_oxred_N 195 arawLrpalerpnleiltgakaekiil..egrkkravGVeasdkkgt.vkrlvvaakevvvaaGalnsPqlLqrSGlGkaehLkevgvdvvvdlp.vG 288
                  a+a+L+ +  r nl + tg++a+++ l  +g +  a GVe+   +g+  +    +  ev+++aGa++sPqlL++SG+G+++hL+evg++v  +l  vG
   KOO25289.1 242 ANAYLEGTEGRSNLCVRTGVHATRVTLegSGDDLCAAGVEYIGADGKpSRAQLAQGGEVLLSAGAVQSPQLLMLSGIGPRAHLEEVGIEVRKELDnVG 339
                  ***************************766667789********9995445555668***************************************** PP

  GMC_oxred_N 289 knLqdHpv 296
                    L dHp+
   KOO25289.1 340 VGLADHPA 347
                  ******95 PP

>> GMC_oxred_C  GMC oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  111.6   0.3   2.5e-35   4.5e-32       1     144 []     450     588 ..     450     588 .. 0.96

  Alignments for each domain:
  == domain 1  score: 111.6 bits;  conditional E-value: 2.5e-35
                  ----EEEEESTT-TCCEEEEE--TT-SHHHHHHHHHHHHHHHHHCTSGGG.TTEECCEECCCTTTTS.HCHHCHHCHHCHHHHH-EE-S--B-TT-B- CS
  GMC_oxred_C   1 PesrGrvtlsssdptgaplidpnylsdprdlaalvealkaarkilaaaal.dvleeeltpgaaeetsdaavesdealekfvkeavltsaHplGtcrMG 97 
                  P+s+G v+l+ssdp ++p ++   lsd++d+a+l+e++k  r++laa+++ +   ee++pg        av+sde+++++v++++++ +  +G+crMG
   KOO25289.1 450 PQSTGLVRLRSSDPLAQPMLQDVHLSDDADVATLREGIKLGRQLLAAKSFdQYRDEEVYPGV-------AVQSDEDIDAYVRKTTHSANALVGSCRMG 540
                  89******************99999***********************88666678888888.......9**************************** PP

                  STCGC.BSB-TTSBBTT-CSEEE-SGGGSSS--SS-THHHHHHHHHHH CS
  GMC_oxred_C  98 adpkd.sVVDsdlrvhgvdnLrVvDaSvfPsapganptltilalAeka 144
                  + +++ +V+D+++rv+gv  LrVvDaS++P ++g+++  +++++Aeka
   KOO25289.1 541 RVDDQaAVLDPEMRVRGVGSLRVVDASAMPHIIGGQTCGPTIMMAEKA 588
                  *99999****************************************97 PP

>> NAD_binding_8  NAD(P)-binding Rossmann-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.1   0.6   8.8e-09   1.6e-05       1      31 [.      52      82 ..      52      93 .. 0.94

  Alignments for each domain:
  == domain 1  score: 25.1 bits;  conditional E-value: 8.8e-09
                   EE--SHHHHHHHHHHHCCTEEEEEE-SSSSS CS
  NAD_binding_8  1 IvGaGlsGlvaAylLakagfdvlllekrdrl 31
                   IvG+G++G+v+A +L+ a ++vl+le++++ 
     KOO25289.1 52 IVGGGAAGCVMAERLSAAEARVLVLEAGTDA 82
                   9**************************9886 PP

>> HI0933_like  HI0933-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.8   0.1   7.4e-08   0.00013       2      41 ..      49      88 ..      48      90 .. 0.93

  Alignments for each domain:
  == domain 1  score: 20.8 bits;  conditional E-value: 7.4e-08
                 SEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSS-HHHHH CS
  HI0933_like  2 dviviGgGaAGlmaAisaakrgkrVlllekakklgrKili 41
                 d i++GgGaAG   A++++++++rVl+le+++ + r ++i
   KOO25289.1 49 DYIIVGGGAAGCVMAERLSAAEARVLVLEAGTDASRDLRI 88
                 679****************************999987775 PP

>> Lycopene_cycl  Lycopene cyclase protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.0   0.3     8e-08   0.00014       1      36 [.      49      82 ..      49      87 .. 0.91

  Alignments for each domain:
  == domain 1  score: 21.0 bits;  conditional E-value: 8e-08
  Lycopene_cycl  1 DvvviGaGpAglslAarlteakpglkvvlieaspsl 36
                   D +++G+G+Ag+ +A+rl  ++++ +v+++ea+ + 
     KOO25289.1 49 DYIIVGGGAAGCVMAERL--SAAEARVLVLEAGTDA 82
                   789***************..999999*****99875 PP

>> Pyr_redox_2  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.0   0.1   7.3e-07    0.0013       2      33 ..      49      80 ..      48      88 .. 0.89

  Alignments for each domain:
  == domain 1  score: 18.0 bits;  conditional E-value: 7.3e-07
                 SEEEE--SHHHHHHHHHHHHHTS-EEEEETTH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2  2 dvvviGgGpAGlaaaltlaqagakvtlveleg 33
                 d++++GgG+AG+ +a++l++a+a+v+++e+++
   KOO25289.1 49 DYIIVGGGAAGCVMAERLSAAEARVLVLEAGT 80
                 799************************97554 PP

>> FAD_binding_2  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   0.5     2e-06    0.0036       1      33 [.      49      81 ..      49     101 .. 0.92

  Alignments for each domain:
  == domain 1  score: 16.4 bits;  conditional E-value: 2e-06
                   SEEEE--SHHHHHHHHHHHHTTT-EEEEESSSG CS
  FAD_binding_2  1 DviViGsGlAGLaAAleaaeaGlkvavvekeqe 33
                   D i++G+G+AG++ A +++ a ++v+v+e +  
     KOO25289.1 49 DYIIVGGGAAGCVMAERLSAAEARVLVLEAGTD 81
                   88***************************9865 PP

>> DAO  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   0.4   2.1e-06    0.0037       1      33 [.      49      83 ..      49     124 .. 0.90
   2 ?   -3.9   0.1       4.3   7.6e+03     327     338 ..     147     158 ..     137     158 .. 0.83

  Alignments for each domain:
  == domain 1  score: 16.9 bits;  conditional E-value: 2.1e-06
                EEEEECTSHHHHHHHHHHHHTT..EEEEESSSSTT CS
         DAO  1 dvviiGGGiiGlstAyeLarrg..Vtllekgdiag 33
                d +i+GGG +G+  A  L+++   V++le+g +a+
  KOO25289.1 49 DYIIVGGGAAGCVMAERLSAAEarVLVLEAGTDAS 83
                789***************988668******97765 PP

  == domain 2  score: -3.9 bits;  conditional E-value: 4.3
                 EEEEEEECTTTH CS
         DAO 327 glylatGhsghG 338
                 + ++a+G++g+G
  KOO25289.1 147 NSWVAAGAEGWG 158
                 89*********9 PP

>> Pyr_redox_3  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.3   1.7e-05     0.031       1      31 [.      51      80 ..      51      88 .. 0.93

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 1.7e-05
  Pyr_redox_3  1 iIiGaGPaGlaaaielkkagledylilEkgn 31
                 iI+G+G+aG  +a  l  a+  ++l+lE g+
   KOO25289.1 51 IIVGGGAAGCVMAERLSAAEA-RVLVLEAGT 80
                 8*******************9.8*****984 PP

>> Pyr_redox  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.2   8.7e-05      0.16       3      31 ..      51      79 ..      49      86 .. 0.92
   2 ?   -3.4   0.0       8.2   1.5e+04      10      19 ..     391     400 ..     391     412 .. 0.84

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 8.7e-05
                EEECSSHHHHHHHHHHHHTTSEEEEEESS CS
   Pyr_redox  3 vvvGgGyiglElAgalaelgkkVtvvers 31
                ++vGgG  g+ +A+ l++  ++V v+e++
  KOO25289.1 51 IIVGGGAAGCVMAERLSAAEARVLVLEAG 79
                79*********************999875 PP

  == domain 2  score: -3.4 bits;  conditional E-value: 8.2
                 HHHHHHHHHH CS
   Pyr_redox  10 iglElAgala 19 
                 +++E++g+++
  KOO25289.1 391 VACEFGGFFK 400
                 69****9996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (627 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       410  (0.022868); expected 358.6 (0.02)
Passed bias filter:                      349  (0.0194657); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.58u 0.26s 00:00:00.84 Elapsed: 00:00:00.41
# Mc/sec: 4585.70
//
Query:       KOO25290.1  [L=342]
Description: putative leucine rich repeat protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.3e-09   35.4   6.6       0.29   11.3   0.0    6.1  7  LRR_6     Leucine Rich repeat


Domain annotation for each model (and alignments):
>> LRR_6  Leucine Rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.1       0.9   1.6e+04      17      23 ..     105     111 ..     103     112 .. 0.81
   2 !   11.3   0.0   1.6e-05      0.29       2      21 ..     118     137 ..     117     139 .. 0.93
   3 !   10.4   0.0   3.1e-05      0.56       2      23 ..     146     168 ..     145     169 .. 0.91
   4 !    4.2   0.0    0.0031        56       2      22 ..     175     196 ..     174     198 .. 0.78
   5 !    6.4   0.0    0.0006        11       3      22 ..     205     224 ..     203     226 .. 0.86
   6 ?    1.2   0.0     0.029   5.1e+02      10      17 ..     271     278 ..     270     279 .. 0.89
   7 ?   -2.7   0.0       0.5     9e+03       3      11 ..     295     303 ..     294     304 .. 0.84

  Alignments for each domain:
  == domain 1  score: -3.5 bits;  conditional E-value: 0.9
       LRR_6  17 DeGaeaL 23 
                 D+G+ aL
  KOO25290.1 105 DAGCVAL 111
                 99*9998 PP

  == domain 2  score: 11.3 bits;  conditional E-value: 1.6e-05
       LRR_6   2 nthLteLdLsgNdIgDeGae 21 
                 n+++++L+L+++++g +G++
  KOO25290.1 118 NRSVQTLELTDCGVGAAGCK 137
                 99***************986 PP

  == domain 3  score: 10.4 bits;  conditional E-value: 3.1e-05
       LRR_6   2 nthLteLdLsgNd.IgDeGaeaL 23 
                 n +L +L L +N  Ig  Ga  L
  KOO25290.1 146 NATLLTLRLDHNRsIGSPGAAVL 168
                 89*****************9766 PP

  == domain 4  score: 4.2 bits;  conditional E-value: 0.0031
       LRR_6   2 nthLteLdLsgNdI.gDeGaea 22 
                 n+ L++++L+++++ gD+Ga+a
  KOO25290.1 175 NRALQTVSLTFCGLeGDVGAQA 196
                 67799********746777776 PP

  == domain 5  score: 6.4 bits;  conditional E-value: 0.0006
       LRR_6   3 thLteLdLsgNdIgDeGaea 22 
                 + L  L+L+gN +g +G+  
  KOO25290.1 205 PMLNVLELKGNRFGVDGILT 224
                 5799************9875 PP

  == domain 6  score: 1.2 bits;  conditional E-value: 0.029
       LRR_6  10 LsgNdIgD 17 
                 L+gN+IgD
  KOO25290.1 271 LAGNEIGD 278
                 89*****9 PP

  == domain 7  score: -2.7 bits;  conditional E-value: 0.5
       LRR_6   3 thLteLdLs 11 
                 thL ++d++
  KOO25290.1 295 THLIYVDVT 303
                 89*999997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (342 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       362  (0.0201908); expected 358.6 (0.02)
Passed bias filter:                      259  (0.0144459); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.22s 00:00:00.64 Elapsed: 00:00:00.37
# Mc/sec: 2798.96
//
Query:       KOO25291.1  [L=156]
Description: hypothetical protein Ctob_009511, partial [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (156 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       288  (0.0160634); expected 358.6 (0.02)
Passed bias filter:                      207  (0.0115455); expected 358.6 (0.02)
Passed Vit filter:                        11  (0.000613531); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.22s 00:00:00.55 Elapsed: 00:00:00.34
# Mc/sec: 1367.14
//
Query:       KOO25292.1  [L=349]
Description: hypothetical protein Ctob_009517 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (349 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       360  (0.0200792); expected 358.6 (0.02)
Passed bias filter:                      211  (0.0117686); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.43u 0.23s 00:00:00.66 Elapsed: 00:00:00.40
# Mc/sec: 2648.76
//
Query:       KOO25293.1  [L=567]
Description: glycosyl transferase family 14 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.5e-18   66.5   0.0    7.1e-11   42.1   0.0    2.1  2  Branch    Core-2/I-Branching enzyme


Domain annotation for each model (and alignments):
>> Branch  Core-2/I-Branching enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.1   0.0     4e-15   7.1e-11      25     139 ..     105     216 ..      91     239 .. 0.87
   2 !   22.4   0.0   3.9e-09     7e-05     145     240 ..     271     359 ..     235     363 .. 0.80

  Alignments for each domain:
  == domain 1  score: 42.1 bits;  conditional E-value: 4e-15
                 TTSEEEEEE-TTS-HHHHHHHHHHHCT-TTEEE-SS-----TTSHHHHHHHHHHHHHHHHH-S---EEEEEETTEEESS-HHHHHHHHHHTTT--B.-- CS
      Branch  25 penlysvyvdskspeeekervktlassvfnvrvipksesvdwggpsmveaerrllanlleedpswdyfvllsesdvplktfdeiykylsslkgknsfvd 123
                 + nl++++vd+k + e +  + + +++ +   ++++  +v w+g smv++  +++a l++++   ++f++ls+ d+ l+t  e+ +++   +g++ +  
  KOO25293.1 105 ESNLFLIHVDAKMKPEDRATLLANVRERPDIYYMRNPRHVMWAGFSMVSSLFDAMASLVSRKLVFEMFINLSDADLTLRTDGELRQFFGRYPGRSIMSI 203
                 68**********999999999999999999**********************************************************99987776555 PP

                 BEE--GGGG.HHHHEE CS
      Branch 124 sfedpgekekkrykpr 139
                   ++  +   +ryk +
  KOO25293.1 204 VPRNRDP---RRYKLH 216
                 4444444...566655 PP

  == domain 2  score: 22.4 bits;  conditional E-value: 3.9e-09
                 EEEEEEE--SS--EEE-S--EEEHHHHHHHHH-HHHHHHHHHHTTSSSGGGTHHHHH.--SSGGG-B-TTTSSSEEE-BTGT-SS---SSEEEE--G CS
      Branch 145 lpeikkeklalklrkGsqwfvlsRafaevvveDelvlqlfkeycdtcspdEhYfpTl.lsmsgefenelvnrtltyvdWserkgahpktyricdlgp 240
                  p  ++     +++ Gsqw +l  +++   v+ +  + ++    +t++pdE  ++T  ++ +  + ++l+ +++++++W  + ++  ++y +++lgp
  KOO25293.1 271 CPTANLP----EVFHGSQWASLHWSLVHQLVRHPTAQGVLGAMEHTLLPDEAMLQTAaVNSP--LRKTLIAQHMRFIEWP-QLHGDANKY-WASLGP 359
                 3444444....89********************************************56666..***************9.666666666.666666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (567 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       311  (0.0173462); expected 358.6 (0.02)
Passed bias filter:                      262  (0.0146132); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.53u 0.28s 00:00:00.81 Elapsed: 00:00:00.44
# Mc/sec: 3842.06
//
Query:       KOO25294.1  [L=668]
Description: kinesin-related protein klpa-like protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    2.3e-96  322.6   0.0    5.8e-96  321.3   0.0    1.7  1  Kinesin      Kinesin motor domain
    4.7e-51  172.6   0.0    1.1e-50  171.4   0.0    1.7  1  Microtub_bd  Microtubule binding
  ------ inclusion threshold ------
      0.011   15.1  24.1      0.016   14.6  10.3    2.4  2  FAM76        FAM76 protein


Domain annotation for each model (and alignments):
>> Kinesin  Kinesin motor domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  321.3   0.0  9.7e-100   5.8e-96       1     331 [.     287     608 ..     287     610 .. 0.92

  Alignments for each domain:
  == domain 1  score: 321.3 bits;  conditional E-value: 9.7e-100
                 EE-SSSHHHHTTTTEBCEEEECTCTCEEEEEEEEECTTSCEEEEESEEEETTS-HHHHHHHHHHHHHHHHHTTSEEEEEEEESTTSSHHHHHTBC.TTT CS
     Kinesin   1 RvRplnekekeeeeeeeveveeekkeeekkskkenkeeeekkfkFdkvfdeeatqeevyeetakplvesvleGynatifaYGqtgsGKTyTmegk.eee 98 
                 RvRp +e   ++ e   + ++ +  ++e     +  + ++++f+Fdkvf++++ qe+v+ e+   lv+s l+Gy+++ifaYGqtgsGKTyTm+g   + 
  KOO25294.1 287 RVRPAHEGAMKAIEFGSDGQK-VMIQHEGAAGISGAKMKTHEFSFDKVFAPSVGQEDVFAEV-DGLVQSSLDGYKVCIFAYGQTGSGKTYTMQGGeAHP 383
                 667776666666665555444.45555566666778899**********************6.******************************984455 PP

                 SBSHHHHHHHHHHHHHHHCTTTHEEEEEEEEEEEEEETTEEEETTSTTTTSTSSEBEEEECTTSCCEEETTS--EEESSHHHHHHHHHHHHHHHTSTTS CS
     Kinesin  99 eeGiipraleelFesikkekeekekefsvkvsylEiYneeiyDLLeskkskkkkklkiredskkgevyvkgltevevksaeevlellekgeknrkvaet 197
                   Giipral+++ ++ +++k +  +++++  s+lEiYne+++DLL++ k   + ++ ir+d+  g ++v++++ +ev+s+e++ +l++k++k r+v++t
  KOO25294.1 384 TWGIIPRALAKILDISETMKGD-GWTWTLVASFLEIYNEQLRDLLHDAKAGAQPSYAIRDDEAWG-TVVANMSRTEVSSMEQINRLMAKAAKARAVGKT 480
                 67**************999987.9************************9888889********98.********************************* PP

                 SCTSHHCCSEEEEEEEEEEEETTTTTCEEEEEEEEEEEEEEECCCHHHHSSTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCCTSTSCGGGSHHHHHTGG CS
     Kinesin 198 klneeSSRSHavftitleqknlkeeteekvkisklnLvDLAGsErasktgaaegerlkEaaniNkSLlaLgrvisaLaekkkskhipYRdSkLTrlLqd 296
                 ++n++SSRSH+vf + l+ +n+k +te    ++ l+LvDLAGsEr+sk+g aege  kE+a+iNkSL+aLg+v +a ++   ++h+p+RdS LT+l++ 
  KOO25294.1 481 EMNAQSSRSHSVFALYLHGTNQKLGTE---LHGALHLVDLAGSERLSKSG-AEGEAAKETAAINKSLSALGNVFEAKKRG--DAHVPFRDSTLTKLMRP 573
                 *********************998888...79******************.58999********************9999..***************** PP

                 GHSSSSEEEEEEEE-TBGGGHHHHHHHHHHHHHHC CS
     Kinesin 297 sLgGnsktlmivtvspssenleetlstlkfaerak 331
                 +L+G+ ktlm+v+v p+s+n +et ++l+fae+++
  KOO25294.1 574 CLSGHGKTLMLVNVGPESDNSHETKCSLEFAEKVN 608
                 ********************************986 PP

>> Microtub_bd  Microtubule binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  171.4   0.0   1.9e-54   1.1e-50       2     149 .]     262     427 ..     261     427 .. 0.94

  Alignments for each domain:
  == domain 1  score: 171.4 bits;  conditional E-value: 1.9e-54
                  HHHHHHHHHCHHHHHHHCTB-EEEEEEECCCS-T.EEEETTT...................TTTEEEE-SEEEECTTHCCCCCCCCHHHHHHHHTT-- CS
  Microtub_bd   2 ekeetlRrkleNtiqelkGniRvfarvrpelesekakikfpe................eekkkkkefsFdrvfeseseqeevfeeisqlvqsaldgyn 83 
                  +++e lRr+l+NtiqelkGniRvf+rvrp +e  + +i+f +                  k k++efsFd+vf ++  qe+vf e+  lvqs+ldgy 
   KOO25294.1 262 RDQERLRRELHNTIQELKGNIRVFCRVRPAHEGAMKAIEFGSdgqkvmiqhegaagisGAKMKTHEFSFDKVFAPSVGQEDVFAEVDGLVQSSLDGYK 359
                  78999****************************98888888455667777889999998899************************************ PP

                  EEEEEEES..................ST-HCHHHHHHHHHHCCTSCCCCEEEEEEEEEEESS-EEETT CS
  Microtub_bd  84 vcifaygqTGsGKtyTmeg..eeeeagmipraveeifetiselkekgwkyeielqfveiynekvqDlL 149
                  vcifaygqTGsGKtyTm+g   + + g ipra+ +i++++++ k  gw++++ ++f+eiyne+++DlL
   KOO25294.1 360 VCIFAYGQTGSGKTYTMQGgeAHPTWGIIPRALAKILDISETMKGDGWTWTLVASFLEIYNEQLRDLL 427
                  *******************87778889****************************************8 PP

>> FAM76  FAM76 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.0   5.8    0.0011       6.6     225     288 ..      24      86 ..       5      93 .. 0.66
   2 ?   14.6  10.3   2.7e-06     0.016     164     288 ..     162     285 ..     104     292 .. 0.62

  Alignments for each domain:
  == domain 1  score: 6.0 bits;  conditional E-value: 0.0011
       FAM76 225 keeiaslkkqleqkdqellekdkkitelkaellekekelreklkelekeakekieklekkirel 288
                 + +++s +kql++k  +ll+kd  + e   ++ ++++e+   + + e+e ++ +e   +k r+ 
  KOO25294.1  24 RATLESTQKQLDEKSATLLQKDEDLRESLRNNAQMQRENAAVV-QHERERSQALEDEARKLRTS 86 
                 5678999*****************9986666655555544433.33333333333333333333 PP

  == domain 2  score: 14.6 bits;  conditional E-value: 2.7e-06
       FAM76 164 ekskekkaskkkskkhkkrss............rlevskleeeklaeekesnetskksldsnssdhlvavtqLkeeiaslkkqleqkdqellekdkkit 250
                  + k+++a            +            + e ++l  e +++ + + ++ k++++s+++d++ a+++Lk  + +lk  le+k +e+ + + +++
  KOO25294.1 162 LELKRSSAV-----------EqleakevmlttkSAEATALARE-KHTLEVEFRAYKEHHSSSNQDQMAAISELKVSVDRLKGDLESKKVEVQSTQGTVA 248
                 111111111...........11111111111112222222222.3334444455566999999************************************ PP

       FAM76 251 elkaellekekelreklkelekeakekieklekkirel 288
                 +  a l++ e++lr++ ++l++e +++i++l+ +ir +
  KOO25294.1 249 MQGAYLETLEAKLRDQ-ERLRRELHNTIQELKGNIRVF 285
                 *************998.556777888899999888765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (668 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2178  (0.121479); expected 358.6 (0.02)
Passed bias filter:                      598  (0.0333538); expected 358.6 (0.02)
Passed Vit filter:                        81  (0.00451782); expected 17.9 (0.001)
Passed Fwd filter:                        22  (0.00122706); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.91u 0.29s 00:00:01.20 Elapsed: 00:00:00.44
# Mc/sec: 4511.81
//
Query:       KOO25295.1  [L=561]
Description: ABC transporter related protein, partial [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
      8e-49  165.7   0.0    1.6e-27   96.7   0.0    2.6  2  ABC_tran       ABC transporter
      9e-22   78.2   3.3    2.4e-06   27.6   0.5    4.2  4  AAA_21         AAA domain, putative AbiEii toxin, Type IV TA 
    2.3e-10   40.3   0.3      0.082   12.3   0.0    4.1  4  SMC_N          RecF/RecN/SMC N terminal domain
    5.9e-09   35.8   0.6    1.6e-08   34.4   0.5    1.7  1  ABC_tran_Xtn   ABC transporter
    3.8e-08   33.0   0.0     0.0032   17.2   0.0    2.4  2  AAA_29         P-loop containing region of AAA domain
      9e-08   32.2   0.0     0.0035   17.3   0.0    2.3  2  RsgA_GTPase    RsgA GTPase
    1.1e-07   32.5   0.0     0.0024   18.4   0.0    2.3  2  AAA_23         AAA domain
      1e-06   28.8   0.1      0.075   13.1   0.0    2.5  2  MMR_HSR1       50S ribosome-binding GTPase
    1.7e-05   25.3   5.0      0.066   13.6   0.1    3.1  3  AAA_16         AAA ATPase domain
    3.4e-05   23.7   0.3       0.27   10.9   0.0    2.2  2  AAA_15         AAA ATPase domain
    4.3e-05   22.6   0.1     0.0081   15.2   0.0    2.5  2  MeaB           Methylmalonyl Co-A mutase-associated GTPase Me
    5.7e-05   22.9   0.0       0.11   12.2   0.0    2.4  2  AAA_24         AAA domain
    6.7e-05   23.0   0.2       0.28   11.2   0.0    2.5  2  Dynamin_N      Dynamin family
    7.2e-05   23.0   0.8       0.49   10.6   0.0    2.8  2  AAA_33         AAA domain
    7.5e-05   22.4   0.5      0.064   12.8   0.0    2.8  2  AAA_27         AAA domain
    0.00016   21.9   0.0       0.13   12.5   0.0    2.8  2  AAA_28         AAA domain
    0.00022   21.8   0.0      0.025   15.1   0.0    2.4  2  AAA_18         AAA domain
    0.00025   21.2   2.0       0.48   10.7   0.2    3.8  2  SbcCD_C        Putative exonuclease SbcCD, C subunit
     0.0012   19.1   1.0       0.31   11.3   0.0    2.9  2  AAA_22         AAA domain
     0.0013   18.6   0.8        1.3    8.9   0.0    2.5  2  NACHT          NACHT domain
     0.0014   18.8   0.2        0.5   10.6   0.0    2.3  2  Roc            Ras of Complex, Roc, domain of DAPkinase
     0.0028   17.0   1.7       0.69    9.2   0.1    2.5  2  Zeta_toxin     Zeta toxin
     0.0035   16.7   0.1        2.4    7.5   0.0    2.4  2  Mg_chelatase   Magnesium chelatase, subunit ChlI
     0.0058   17.0   0.1        5.1    7.5   0.0    2.4  2  RNA_helicase   RNA helicase
     0.0094   16.4   0.1        4.6    7.7   0.0    2.8  2  AAA            ATPase family associated with various cellular
  ------ inclusion threshold ------
      0.022   13.9   0.3       0.48    9.5   0.1    2.3  2  DUF815         Protein of unknown function (DUF815)
      0.022   14.5   0.0       0.13   12.0   0.0    2.1  2  ATP_bind_1     Conserved hypothetical ATP binding protein
      0.024   14.2   0.0        4.2    6.9   0.0    2.3  2  AAA_7          P-loop containing dynein motor region
      0.029   14.0   0.9        3.4    7.2   0.1    2.4  2  cobW           CobW/HypB/UreG, nucleotide-binding domain
      0.029   13.9   1.1        3.9    7.0   0.1    2.8  3  AAA_25         AAA domain
      0.047   13.4   0.0       0.96    9.1   0.0    2.2  2  ATP-synt_ab    ATP synthase alpha/beta family, nucleotide-bin
      0.051   13.6   0.0        7.5    6.6   0.0    2.4  2  AAA_5          AAA domain (dynein-related subfamily)
      0.056   13.9   0.9       0.61   10.5   0.0    2.3  2  AAA_17         AAA domain
      0.057   13.2   0.2        2.3    7.9   0.0    2.3  2  PduV-EutP      Ethanolamine utilisation - propanediol utilisa
      0.079   12.8   0.1        4.5    7.0   0.1    2.3  2  MukB           MukB N-terminal
      0.092   12.8   0.1         10    6.1   0.0    2.3  2  TsaE           Threonylcarbamoyl adenosine biosynthesis prote
        0.1   11.9   0.1        9.9    5.4   0.0    2.2  2  FtsK_SpoIIIE   FtsK/SpoIIIE family
        0.1   12.3   0.2        9.7    5.9   0.0    2.6  2  IstB_IS21      IstB-like ATP binding protein
       0.11   12.2   5.5        1.7    8.3   0.0    3.3  3  AAA_30         AAA domain
       0.11   11.6   0.0        1.5    7.9   0.0    2.2  2  NB-ARC         NB-ARC domain
       0.17   11.6   0.0         22    4.7   0.0    2.2  2  Guanylate_kin  Guanylate kinase
       0.18   11.3   0.4        9.2    5.8   0.0    2.5  2  FeoB_N         Ferrous iron transport protein B


Domain annotation for each model (and alignments):
>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   96.7   0.0   3.7e-30   1.6e-27       2     137 .]      35     201 ..      34     201 .. 0.85
   2 !   66.5   0.0     8e-21   3.4e-18       5     137 .]     361     498 ..     357     498 .. 0.78

  Alignments for each domain:
  == domain 1  score: 96.7 bits;  conditional E-value: 3.7e-30
                 EEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGGB-HHHCCHCEEEE-SS--S-TTSBHHHH..................... CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..................... RF
    ABC_tran   2 knvslklkegekvaivGenGaGKStLlkllagllkpteGeilldgkdlkeqeleslrkeigvlpqepqlfpeltvren..................... 79 
                 k++s+ + +g k+a+vG nGaGKS+Llk+l+g+l+p+ G++ +               ++++++qep+l p+  +++                      
  KOO25295.1  35 KDISFAIARGAKLALVGANGAGKSSLLKVLCGKLQPDTGSVDI-----------ARGVRSAYVEQEPSLPPGAPAADFifssdapfaralaeyraavqa 122
                 89***************************************33...........357888899999999999977777898999999999999999999 PP

                 .........................HHHTCHHHHHHHSTTGGTTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTTT CS
                 .........................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  80 .........................esdeeiekalsklglkelkdtvvksspssLSgGqkqrvalarallkkpkllllDEpta 137
                                            +ee++++ ++l+ ++l  + +    ssLSgG+++rvala+all++p+llllDEpt+
  KOO25295.1 123 vddgesdaservgraaaamdkadawGIEEEMQRLCATLEVDHLLSRDA----SSLSGGERKRVALAAALLSQPDLLLLDEPTN 201
                 999988887778777887776555555555777777777777777777....******************************8 PP

  == domain 2  score: 66.5 bits;  conditional E-value: 8e-21
                 EEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEE.........EETTCEGGGB-HHHCCHCEEEE-SS--S-TTSBHHHHHHHTCHHHHHHHSTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.........xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran   5 slklkegekvaivGenGaGKStLlkllagllkpteGei.........lldgkdlkeqeleslrkeigvlpqepqlfpeltvrenesdeeiekalsklgl 94 
                 + ++ +  ++++vG+nGaGKStLl++l g+l    G+i         +++++ l++ +l++    ++++++     p+  v   ++++ ++ +lsk+  
  KOO25295.1 361 EYEFGRKDRIGVVGPNGAGKSTLLQALQGHLPLLDGHIecgetvrfgHYEQRGLET-DLPVELTVLAFVQEAVARAPGGGVSADADEKAATSLLSKFLF 458
                 667788999*****************************555544444444444444.666666666666666666666666666777778888888775 PP

                 GGTTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  95 kelkdtvvksspssLSgGqkqrvalarallkkpkllllDEpta 137
                 +    ++++++ ++LSgG+++r+++ r+l+ +p++lllDEpt+
  KOO25295.1 459 PP---KRWYDRVAKLSGGERRRLQMLRVLALQPNFLLLDEPTN 498
                 55...7777888******************************8 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.9   0.0   5.1e-06    0.0022       3      60 ..      48     103 ..      47     125 .. 0.71
   2 !   27.6   0.5   5.6e-09   2.4e-06     224     301 ..     160     231 ..     125     233 .. 0.85
   3 !   22.6   0.0   1.9e-07   8.2e-05       3      24 ..     371     392 ..     370     430 .. 0.80
   4 !    7.7   0.0    0.0064       2.7     235     302 ..     468     530 ..     439     531 .. 0.84

  Alignments for each domain:
  == domain 1  score: 17.9 bits;  conditional E-value: 5.1e-06
      AAA_21   3 vliGpNgsGKSnLLdaldllarldrdvegltdelsggggirkipslldlydpeipfef 60 
                 +l+G+Ng+GKS+LL+ l     l++d  +  + ++ ++ + +++ +l++++p  +f f
  KOO25295.1  48 ALVGANGAGKSSLLKVL--CGKLQPDTGSVDIARGVRSAYVEQEPSLPPGAPAADFIF 103
                 79***************..222255555555555555566555555555555555555 PP

  == domain 2  score: 27.6 bits;  conditional E-value: 5.6e-09
      AAA_21 224 lengdgqelparelSdGtkrllalltallralkkgsllliDEpEngLHPkllrrllell..kelsrngaQviltTHSpll 301
                 le ++   ++a++lS G ++  al++all+++   +lll+DEp n+L+  ++r l + +  ++l       +++TH+ ++
  KOO25295.1 160 LEVDHLLSRDASSLSGGERKRVALAAALLSQP---DLLLLDEPTNHLDIGAIRFLEGEIaaRSL-----TALIVTHDRSF 231
                 5566667788999*****************99...9*************999999877744444.....44888888655 PP

  == domain 3  score: 22.6 bits;  conditional E-value: 1.9e-07
      AAA_21   3 vliGpNgsGKSnLLdaldllar 24 
                 +++GpNg+GKS+LL+al++   
  KOO25295.1 371 GVVGPNGAGKSTLLQALQGHLP 392
                 68***************88754 PP

  == domain 4  score: 7.7 bits;  conditional E-value: 0.0064
      AAA_21 235 relSdGtkrllalltallralkkgsllliDEpEngLHPkllrrllellkelsrngaQviltTHSplll 302
                 ++lS G +r l +l  l+ ++    +ll+DEp n L+   +  l ++l ++    + +++++H+ ++l
  KOO25295.1 468 AKLSGGERRRLQMLRVLALQP---NFLLLDEPTNDLDLDTIGVLEDFLVNEYL--GVLLIVSHDRFFL 530
                 678999999999999999888...89***********9988888888877755..7778888887766 PP

>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.5   0.0    0.0014      0.58      27      44 ..      47      64 ..      23      73 .. 0.75
   2 !    9.3   0.0    0.0016      0.67     134     210 ..     170     241 ..      96     250 .. 0.78
   3 !   12.3   0.0   0.00019     0.082      27      45 ..     370     388 ..     361     394 .. 0.87
   4 ?    4.0   0.0      0.07        30     136     199 ..     469     527 ..     422     540 .. 0.75

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 0.0014
                EEEEESTTSSHHHHHHHH CS
                xxxxxxxxxxxxxxxxxx RF
       SMC_N 27 taivGpNGSGKsnlldAi 44
                 a+vG+NG+GKs+ll  +
  KOO25295.1 47 LALVGANGAGKSSLLKVL 64
                489**********99765 PP

  == domain 2  score: 9.3 bits;  conditional E-value: 0.0016
                 TTCS-HHHHHHHHHHHHHHHHCCS--SEEEECTTTTTS-HHHHHHHHHHHHHHCTTSEEEEE-SSHHHCCC-.SCEEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxx RF
       SMC_N 134 kelLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvkkvaellkeksknaQfivislreemleka.dklvg 210
                  ++LSgGe++ vala        ++  l llDe   +LD   ++ +   + ++s     +++++++ +l+   ++++ 
  KOO25295.1 170 ASSLSGGERKRVALAAA----LLSQPDLLLLDEPTNHLDIGAIRFLEGEIAARS--LTALIVTHDRSFLSATcNEVLE 241
                 458*******9998754....34445699*********************9999..8889999998888765466555 PP

  == domain 3  score: 12.3 bits;  conditional E-value: 0.00019
                 EEEEESTTSSHHHHHHHHH CS
                 xxxxxxxxxxxxxxxxxxx RF
       SMC_N  27 taivGpNGSGKsnlldAil 45 
                   +vGpNG+GKs ll+A++
  KOO25295.1 370 IGVVGPNGAGKSTLLQALQ 388
                 569**************85 PP

  == domain 4  score: 4.0 bits;  conditional E-value: 0.07
                 CS-HHHHHHHHHHHHHHHHCCS--SEEEECTTTTTS-HHHHHHHHHHHHHHCTTSEEEEE-SSH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N 136 lLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvkkvaellkeksknaQfivislre 199
                  LSgGe+  + +  ++A+q      + llDe    LD   +  + ++l ++     ++++s+++
  KOO25295.1 469 KLSGGERRRLQMLRVLALQP----NFLLLDEPTNDLDLDTIGVLEDFLVNEY-LGVLLIVSHDR 527
                 79****87555555567764....599**********999999988887766.34455556555 PP

>> ABC_tran_Xtn  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.4   0.5   3.8e-11   1.6e-08       1      70 [.     240     307 ..     240     317 .. 0.93

  Alignments for each domain:
  == domain 1  score: 34.4 bits;  conditional E-value: 3.8e-11
  ABC_tran_Xtn   1 velengklteYkGnYseyleekeerleqqqkayekqqkeikkleefIerfrakakkakqaqsrekaLekl 70 
                   +el++ ++++ +G+Y+++l+ k++rle++ +a ++  +++k + +++++  +   ++++ +sr+ a+++l
    KOO25295.1 240 LELSRTEVHRHRGDYEAFLASKQARLEAEGAATAAARNKLKTELAWVRKQPQ--GRQAKSKSRVDAFQQL 307
                   699*************************************************..788889*****99998 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.1   0.0   0.00014     0.062      15      39 ..      37      61 ..      29      72 .. 0.77
   2 !   17.2   0.0   7.4e-06    0.0032      17      43 ..     362     388 ..     356     391 .. 0.82

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 0.00014
      AAA_29 15 htieidlkg.atlltGpsGsGKSTll 39
                 ++ i  +g    l+G++G+GKS+ll
  KOO25295.1 37 ISFAIA-RGaKLALVGANGAGKSSLL 61
                455565.445899************8 PP

  == domain 2  score: 17.2 bits;  conditional E-value: 7.4e-06
      AAA_29  17 ieidlkgatlltGpsGsGKSTllDAiq 43 
                 +e+ +k+ + ++Gp+G+GKSTll A+q
  KOO25295.1 362 YEFGRKDRIGVVGPNGAGKSTLLQALQ 388
                 56666777789************9987 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   0.0   8.1e-06    0.0035      90     131 ..      34      76 ..      18      82 .. 0.80
   2 !   12.6   0.0   0.00023     0.098     104     125 ..     372     393 ..     363     437 .. 0.79

  Alignments for each domain:
  == domain 1  score: 17.3 bits;  conditional E-value: 8.1e-06
                  HHHHHHHCTT.SEEEEECSTTSSHHHHHHHHCTT-----S--- CS
  RsgA_GTPase  90 leelkellkd.ktsvlvGqSGvGKStLinallpelelktgevs 131
                  +++++ +++     +lvG  G+GKS+L+++l ++l+  tg+v 
   KOO25295.1  34 FKDISFAIARgAKLALVGANGAGKSSLLKVLCGKLQPDTGSVD 76 
                  566666666657889*********************9999885 PP

  == domain 2  score: 12.6 bits;  conditional E-value: 0.00023
                  EECSTTSSHHHHHHHHCTT--- CS
  RsgA_GTPase 104 lvGqSGvGKStLinallpelel 125
                  +vG+ G+GKStL+ al+++l l
   KOO25295.1 372 VVGPNGAGKSTLLQALQGHLPL 393
                  79***************99544 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.8   0.0    0.0006      0.26      23      40 ..      48      65 ..      27      89 .. 0.85
   2 !   18.4   0.0   5.7e-06    0.0024      22      40 ..     370     388 ..     355     391 .. 0.80

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 0.0006
      AAA_23 23 lItGpNGaGKTTildAik 40
                +++G NGaGK+++l  ++
  KOO25295.1 48 ALVGANGAGKSSLLKVLC 65
                689***********9988 PP

  == domain 2  score: 18.4 bits;  conditional E-value: 5.7e-06
      AAA_23  22 tlItGpNGaGKTTildAik 40 
                   ++GpNGaGK+T+l+A++
  KOO25295.1 370 IGVVGPNGAGKSTLLQALQ 388
                 5689*************96 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.1   0.1   0.00018     0.078       2      22 ..      47      67 ..      46      84 .. 0.85
   2 !   13.1   0.0   0.00018     0.075       1      22 [.     369     390 ..     369     417 .. 0.85

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 0.00018
                EEEEESTTSSHHHHHHHHHTS CS
    MMR_HSR1  2 vaivGrpNvGKStLinaltge 22
                 a+vG   +GKS+L++ l+g+
  KOO25295.1 47 LALVGANGAGKSSLLKVLCGK 67
                69*****************98 PP

  == domain 2  score: 13.1 bits;  conditional E-value: 0.00018
                 EEEEEESTTSSHHHHHHHHHTS CS
    MMR_HSR1   1 evaivGrpNvGKStLinaltge 22 
                 ++++vG   +GKStL++al g 
  KOO25295.1 369 RIGVVGPNGAGKSTLLQALQGH 390
                 699***************9874 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.6   0.1   0.00016     0.066      27     107 ..      47     161 ..      39     203 .. 0.59
   2 ?    0.4   0.5       1.8   7.6e+02      73     127 ..     254     308 ..     214     318 .. 0.57
   3 !   11.6   0.0   0.00063      0.27      29      55 ..     372     398 ..     364     497 .. 0.58

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 0.00016
      AAA_16  27 vllsGesGvGKsslvrellralekdggif..lrgkcdql.esa......ipy........salaqalareellrqlldeaesaeleawrekleeala.. 106
                 + l+G+ G GKssl++ l   l+ d g +  +rg    + e++      +p         +++a+ala+ +   q  d+ es++ e+  ++  +a+   
  KOO25295.1  47 LALVGANGAGKSSLLKVLCGKLQPDTGSVdiARGVRSAYvEQEpslppgAPAadfifssdAPFARALAEYRAAVQAVDDGESDASERVGRAA-AAMDka 144
                 679**********************5555443333333332222333332225556677455899998888888888885654444444421.111123 PP

      AAA_16 107 ................a 107
                                 +
  KOO25295.1 145 dawgieeemqrlcatlE 161
                 33333333334444441 PP

  == domain 2  score: 0.4 bits;  conditional E-value: 1.8
      AAA_16  73 aqalareellrqlldeaesaeleawrekleeala...avpelagaeasrllellkrll 127
                  +a+ ++   +q   eae a+ +a+r kl+++la    +p+ + a++++  +++++l 
  KOO25295.1 254 YEAFLAS---KQARLEAEGAATAAARNKLKTELAwvrKQPQGRQAKSKSRVDAFQQLS 308
                 3333232...222333444566777777777777777667777777777777777665 PP

  == domain 3  score: 11.6 bits;  conditional E-value: 0.00063
      AAA_16  29 lsGesGvGKsslvrellralekdggif 55 
                 ++G+ G GKs+l+++l+ +l   +g+ 
  KOO25295.1 372 VVGPNGAGKSTLLQALQGHLPLLDGHI 398
                 99**************98776554444 PP

>> AAA_15  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.6   0.1   0.00078      0.33      25      43 ..      46      64 ..      34      66 .. 0.82
   2 !   10.9   0.0   0.00064      0.27      28      44 ..     372     388 ..     363     389 .. 0.92

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00078
      AAA_15 25 ltvliGkNnsGKSsileal 43
                   l+G+N++GKSs+l++l
  KOO25295.1 46 KLALVGANGAGKSSLLKVL 64
                5689************997 PP

  == domain 2  score: 10.9 bits;  conditional E-value: 0.00064
      AAA_15  28 liGkNnsGKSsileald 44 
                 ++G+N++GKS++l+al+
  KOO25295.1 372 VVGPNGAGKSTLLQALQ 388
                 79*************95 PP

>> MeaB  Methylmalonyl Co-A mutase-associated GTPase MeaB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.8   0.0     0.028        12      18      54 ..      33      69 ..      18      90 .. 0.84
   2 !   15.2   0.0   1.9e-05    0.0081      15      53 ..     353     391 ..     343     397 .. 0.83

  Alignments for each domain:
  == domain 1  score: 4.8 bits;  conditional E-value: 0.028
                HHHHHGGG-S-SEEEEEEE-TTSSHHHHHHHHHHHHH CS
        MeaB 18 llerllakaGraqvvGltGvPGaGkstlvealglelr 54
                +++ ++    r  ++ l G  GaGks l++ l  +l+
  KOO25295.1 33 IFKDISFAIARGAKLALVGANGAGKSSLLKVLCGKLQ 69
                56677777889999***************99988876 PP

  == domain 2  score: 15.2 bits;  conditional E-value: 1.9e-05
                 HHHHHHHHGGG-S-SEEEEEEE-TTSSHHHHHHHHHHHH CS
        MeaB  15 akellerllakaGraqvvGltGvPGaGkstlvealglel 53 
                  +++++    + Gr  ++G+ G  GaGkstl++al  +l
  KOO25295.1 353 GRRVVNGFEYEFGRKDRIGVVGPNGAGKSTLLQALQGHL 391
                 566666677789**********************98766 PP

>> AAA_24  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.2   0.0   0.00026      0.11       2      48 ..      44     101 ..      43     165 .. 0.76
   2 !    8.5   0.0    0.0036       1.5       2      22 ..     367     387 ..     366     396 .. 0.82

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 0.00026
      AAA_24   2 klkiliyGpsgiGKTtlakel....gpkplfidtekGlksldadkfpdie.......s 48 
                 ++k++++G +g+GK++l+k l    +p++  +d+ +G++s ++ + p+++        
  KOO25295.1  44 GAKLALVGANGAGKSSLLKVLcgklQPDTGSVDIARGVRSAYVEQEPSLPpgapaadF 101
                 689*********************9***************999998887766644440 PP

  == domain 2  score: 8.5 bits;  conditional E-value: 0.0036
      AAA_24   2 klkiliyGpsgiGKTtlakel 22 
                 k +i ++Gp+g+GK+tl+  l
  KOO25295.1 367 KDRIGVVGPNGAGKSTLLQAL 387
                 56899************9988 PP

>> Dynamin_N  Dynamin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.3   0.1    0.0026       1.1       1      21 [.      47      67 ..      47      79 .. 0.90
   2 !   11.2   0.0   0.00066      0.28       1      22 [.     370     391 ..     370     404 .. 0.85

  Alignments for each domain:
  == domain 1  score: 9.3 bits;  conditional E-value: 0.0026
                EEEEEBTTTTHHHHHHHHHTS CS
   Dynamin_N  1 iavvGsqSsGKSSvlnaLlge 21
                +a+vG+  +GKSS+l  L+g+
  KOO25295.1 47 LALVGANGAGKSSLLKVLCGK 67
                589***************997 PP

  == domain 2  score: 11.2 bits;  conditional E-value: 0.00066
                 EEEEEBTTTTHHHHHHHHHTS- CS
   Dynamin_N   1 iavvGsqSsGKSSvlnaLlged 22 
                 i vvG   +GKS++l aL g+ 
  KOO25295.1 370 IGVVGPNGAGKSTLLQALQGHL 391
                 79****************9985 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.6   0.0    0.0011      0.49       4      43 ..      49      90 ..      47     164 .. 0.75
   2 !   10.1   0.0    0.0016      0.67       4      24 ..     372     392 ..     370     414 .. 0.86

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.0011
      AAA_33  4 lvGlpGsGKstlaerllkklgavllssdtlrr.rlfg.tdqq 43
                lvG++G+GKs l++ l+ kl+  + s d++r  r ++ ++++
  KOO25295.1 49 LVGANGAGKSSLLKVLCGKLQPDTGSVDIARGvRSAYvEQEP 90
                89******************9888888887764333224444 PP

  == domain 2  score: 10.1 bits;  conditional E-value: 0.0016
      AAA_33   4 lvGlpGsGKstlaerllkklg 24 
                 +vG++G+GKstl++ l  +l+
  KOO25295.1 372 VVGPNGAGKSTLLQALQGHLP 392
                 79***********99876665 PP

>> AAA_27  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.7   0.0     0.012       4.9      14      44 ..      34      62 ..      31      66 .. 0.76
   2 !   12.8   0.0   0.00015     0.064      31      47 ..     372     388 ..     359     393 .. 0.85

  Alignments for each domain:
  == domain 1  score: 6.7 bits;  conditional E-value: 0.012
      AAA_27 14 ftdrsldfsaeeadlhliyGpNEAGKstalr 44
                f+d s+++    a+l l +G+N AGKs++l+
  KOO25295.1 34 FKDISFAIA-RGAKLAL-VGANGAGKSSLLK 62
                556666665.5677776.5*********997 PP

  == domain 2  score: 12.8 bits;  conditional E-value: 0.00015
      AAA_27  31 iyGpNEAGKstalrAis 47 
                 ++GpN AGKst+l+A++
  KOO25295.1 372 VVGPNGAGKSTLLQALQ 388
                 89*************97 PP

>> AAA_28  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6   0.0      0.02       8.6       2      20 ..      47      65 ..      46     145 .. 0.84
   2 !   12.5   0.0    0.0003      0.13       1      43 [.     369     413 ..     369     450 .. 0.69

  Alignments for each domain:
  == domain 1  score: 6.6 bits;  conditional E-value: 0.02
      AAA_28  2 ivitGgestGKTtlleaLa 20
                 +++G+ ++GK++ll+ L 
  KOO25295.1 47 LALVGANGAGKSSLLKVLC 65
                689************9875 PP

  == domain 2  score: 12.5 bits;  conditional E-value: 0.0003
      AAA_28   1 kivitGgestGKTtlleaLaar..gypvvpEaareileeklakge 43 
                 +i ++G+ ++GK+tll+aL+ +      + E + ++ + ++++++
  KOO25295.1 369 RIGVVGPNGAGKSTLLQALQGHlpLLDGHIECGETVRFGHYEQRG 413
                 57789***************9977455556666666666665544 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.4   0.0      0.12        52       3      19 ..      49      65 ..      47     134 .. 0.84
   2 !   15.1   0.0     6e-05     0.025       1      41 [.     370     417 ..     370     446 .. 0.81

  Alignments for each domain:
  == domain 1  score: 4.4 bits;  conditional E-value: 0.12
      AAA_18  3 ltGtpGvGKttlakeLs 19
                l G+ G+GK++l k L 
  KOO25295.1 49 LVGANGAGKSSLLKVLC 65
                89***********9993 PP

  == domain 2  score: 15.1 bits;  conditional E-value: 6e-05
      AAA_18   1 IlltGtpGvGKttlakeLskrlgf.......gvnlrdvakenglllev 41 
                 I++ G+ G+GK+tl ++L+ +l +       g+ +r+ ++e + l+++
  KOO25295.1 370 IGVVGPNGAGKSTLLQALQGHLPLldghiecGETVRFGHYEQRGLETD 417
                 89****************999865687777777777777776666655 PP

>> SbcCD_C  Putative exonuclease SbcCD, C subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.7   0.2    0.0011      0.48      25      77 ..     165     204 ..     149     211 .. 0.75
   2 ?    6.0   0.1     0.033        14      25      47 ..     462     484 ..     459     514 .. 0.62

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.0011
     SbcCD_C  25 elsrssgtlSGGekqflaylalaaalaalyssaegrepalrlvfLDEAFsklD 77 
                  lsr++++lSGGe+     +alaaal ++          ++l++LDE  + lD
  KOO25295.1 165 LLSRDASSLSGGER---KRVALAAALLSQ----------PDLLLLDEPTNHLD 204
                 489***********...788899887654..........45566666666666 PP

  == domain 2  score: 6.0 bits;  conditional E-value: 0.033
     SbcCD_C  25 elsrssgtlSGGekqflaylala 47 
                 ++++++++lSGGe++ l +l ++
  KOO25295.1 462 RWYDRVAKLSGGERRRLQMLRVL 484
                 57889999999999766655544 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.5   0.0     0.046        19       8      29 ..      47      68 ..      43      91 .. 0.82
   2 !   11.3   0.0   0.00072      0.31      10      35 ..     372     397 ..     366     523 .. 0.76

  Alignments for each domain:
  == domain 1  score: 5.5 bits;  conditional E-value: 0.046
      AAA_22  8 lvvtGesGtGKTtllrrlleql 29
                l+++G  G+GK+ ll+ l  +l
  KOO25295.1 47 LALVGANGAGKSSLLKVLCGKL 68
                689************9876666 PP

  == domain 2  score: 11.3 bits;  conditional E-value: 0.00072
      AAA_22  10 vtGesGtGKTtllrrlleqldeeaka 35 
                 v+G+ G+GK+tll+ l+  l+    +
  KOO25295.1 372 VVGPNGAGKSTLLQALQGHLPLLDGH 397
                 89**************9888654444 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.7   0.1    0.0073       3.1       3      25 ..      47      69 ..      45      81 .. 0.88
   2 !    8.9   0.0     0.003       1.3       3      21 ..     370     388 ..     368     402 .. 0.88

  Alignments for each domain:
  == domain 1  score: 7.7 bits;  conditional E-value: 0.0073
                EEEEC-TTTCHHHHHHHHHHHHC CS
       NACHT  3 vilqGeaGsGKTtLlqklalawa 25
                ++l G++G GK+ Ll+ l+ +++
  KOO25295.1 47 LALVGANGAGKSSLLKVLCGKLQ 69
                6799************9998876 PP

  == domain 2  score: 8.9 bits;  conditional E-value: 0.003
                 EEEEC-TTTCHHHHHHHHH CS
       NACHT   3 vilqGeaGsGKTtLlqkla 21 
                 + + G++G GK+tLlq l 
  KOO25295.1 370 IGVVGPNGAGKSTLLQALQ 388
                 5689************986 PP

>> Roc  Ras of Complex, Roc, domain of DAPkinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.6   0.0    0.0012       0.5       1      22 [.      46      67 ..      46      88 .. 0.84
   2 ?    6.1   0.0     0.029        12       2      20 ..     370     388 ..     369     391 .. 0.87

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.0012
                EEEEESSTTSSHHHHHHCHCT- CS
         Roc  1 KvvlvGdsgvGKtsllkrfved 22
                K+ lvG +g+GK+sllk ++ +
  KOO25295.1 46 KLALVGANGAGKSSLLKVLCGK 67
                899**************99954 PP

  == domain 2  score: 6.1 bits;  conditional E-value: 0.029
                 EEEESSTTSSHHHHHHCHC CS
         Roc   2 vvlvGdsgvGKtsllkrfv 20 
                 + +vG +g+GK++ll+ ++
  KOO25295.1 370 IGVVGPNGAGKSTLLQALQ 388
                 679************9876 PP

>> Zeta_toxin  Zeta toxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.2   0.1    0.0016      0.69      20      49 ..      48      77 ..      33      81 .. 0.87
   2 ?    6.6   0.0      0.01       4.3      15      40 ..     366     391 ..     358     402 .. 0.84

  Alignments for each domain:
  == domain 1  score: 9.2 bits;  conditional E-value: 0.0016
  Zeta_toxin 20 llgGqpGAGKselaellkdelerqgnvvrl 49
                 l+G+ GAGKs+l++ l  +l+++ + v +
  KOO25295.1 48 ALVGANGAGKSSLLKVLCGKLQPDTGSVDI 77
                589******************998888877 PP

  == domain 2  score: 6.6 bits;  conditional E-value: 0.01
  Zeta_toxin  15 rPklillgGqpGAGKselaellkdel 40 
                 r++ i ++G  GAGKs+l+++l+  l
  KOO25295.1 366 RKDRIGVVGPNGAGKSTLLQALQGHL 391
                 56667789************999776 PP

>> Mg_chelatase  Magnesium chelatase, subunit ChlI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6   0.0     0.011       4.5      15      48 ..      37      70 ..      33      87 .. 0.85
   2 !    7.5   0.0    0.0055       2.4      27      50 ..     372     395 ..     365     411 .. 0.87

  Alignments for each domain:
  == domain 1  score: 6.6 bits;  conditional E-value: 0.011
  Mg_chelatase 15 leiaaaGgHnlllvGppGsGKtmlakrlpsllpp 48
                  +  a+a g +l lvG+ G+GK+ l k l + l p
    KOO25295.1 37 ISFAIARGAKLALVGANGAGKSSLLKVLCGKLQP 70
                  5678899999**************9999876654 PP

  == domain 2  score: 7.5 bits;  conditional E-value: 0.0055
  Mg_chelatase  27 lvGppGsGKtmlakrlpsllppls 50 
                   +vGp G+GK+ l ++l++ lp l+
    KOO25295.1 372 VVGPNGAGKSTLLQALQGHLPLLD 395
                   79******************9876 PP

>> RNA_helicase  RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.5   0.0     0.012       5.1       3      23 ..      49      69 ..      47      89 .. 0.81
   2 ?    7.0   0.0     0.017       7.3       3      20 ..     372     389 ..     370     403 .. 0.86

  Alignments for each domain:
  == domain 1  score: 7.5 bits;  conditional E-value: 0.012
  RNA_helicase  3 lyGpsgeGKStlakeLakall 23
                  l+G++g GKS+l k L+ +l+
    KOO25295.1 49 LVGANGAGKSSLLKVLCGKLQ 69
                  89*************999887 PP

  == domain 2  score: 7.0 bits;  conditional E-value: 0.017
  RNA_helicase   3 lyGpsgeGKStlakeLak 20 
                   ++Gp+g GKStl + L  
    KOO25295.1 372 VVGPNGAGKSTLLQALQG 389
                   79***********99764 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.7   0.0     0.011       4.6       2      39 ..      48      86 ..      47      92 .. 0.76
   2 ?    5.7   0.0     0.043        18       3      22 ..     372     391 ..     370     435 .. 0.85

  Alignments for each domain:
  == domain 1  score: 7.7 bits;  conditional E-value: 0.011
                EEESSTTSSHHHHHHHHHHHHTHEEEEEETTTCS.SSST CS
         AAA  2 llyGppGtGKTllakavakelgvefleisgsell.skyv 39
                 l+G  G GK++l k ++ +l+ +  +++ ++ + s yv
  KOO25295.1 48 ALVGANGAGKSSLLKVLCGKLQPDTGSVDIARGVrSAYV 86
                599*****************9877666666655545555 PP

  == domain 2  score: 5.7 bits;  conditional E-value: 0.043
                 EESSTTSSHHHHHHHHHHHH CS
         AAA   3 lyGppGtGKTllakavakel 22 
                 ++Gp G GK++l +a+  +l
  KOO25295.1 372 VVGPNGAGKSTLLQALQGHL 391
                 79************997765 PP

>> DUF815  Protein of unknown function (DUF815)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   0.1    0.0011      0.48      56      79 ..      47      70 ..      37      87 .. 0.85
   2 ?    1.8   0.0      0.26   1.1e+02      58      75 ..     372     389 ..     367     393 .. 0.86

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 0.0011
      DUF815 56 vLLwGarGtGKSslvkallneyae 79
                + L+Ga G+GKSsl+k l  +++ 
  KOO25295.1 47 LALVGANGAGKSSLLKVLCGKLQP 70
                5699*************9988775 PP

  == domain 2  score: 1.8 bits;  conditional E-value: 0.26
      DUF815  58 LwGarGtGKSslvkalln 75 
                 ++G  G+GKS+l++al  
  KOO25295.1 372 VVGPNGAGKSTLLQALQG 389
                 5799**********9975 PP

>> ATP_bind_1  Conserved hypothetical ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   0.0       2.1   9.1e+02       2      16 ..      50      64 ..      49      71 .. 0.85
   2 ?   12.0   0.0   0.00031      0.13       1      23 [.     372     394 ..     372     400 .. 0.89

  Alignments for each domain:
  == domain 1  score: -0.6 bits;  conditional E-value: 2.1
  ATP_bind_1  2 vGpaGsGKttfvgal 16
                vG  G+GK+++ + l
  KOO25295.1 50 VGANGAGKSSLLKVL 64
                899*******98765 PP

  == domain 2  score: 12.0 bits;  conditional E-value: 0.00031
  ATP_bind_1   1 vvGpaGsGKttfvgalseilelr 23 
                 vvGp G+GK+t+ +al+ +l+l 
  KOO25295.1 372 VVGPNGAGKSTLLQALQGHLPLL 394
                 89*****************9976 PP

>> AAA_7  P-loop containing dynein motor region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.9   0.0    0.0098       4.2      29      61 ..      40      72 ..      32      78 .. 0.86
   2 ?    4.8   0.0     0.042        18      35      57 ..     369     391 ..     360     397 .. 0.84

  Alignments for each domain:
  == domain 1  score: 6.9 bits;  conditional E-value: 0.0098
       AAA_7 29 llknkkpvllvGptGtGKtviikdllkkldkek 61
                 ++++ ++ lvG  G GK++++k l+ kl++++
  KOO25295.1 40 AIARGAKLALVGANGAGKSSLLKVLCGKLQPDT 72
                567788999**************9999998765 PP

  == domain 2  score: 4.8 bits;  conditional E-value: 0.042
       AAA_7  35 pvllvGptGtGKtviikdllkkl 57 
                  + +vGp G GK+++++ l  +l
  KOO25295.1 369 RIGVVGPNGAGKSTLLQALQGHL 391
                 5678************9987666 PP

>> cobW  CobW/HypB/UreG, nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.8   0.1     0.044        19       4      22 ..      48      67 ..      45      78 .. 0.81
   2 ?    7.2   0.1    0.0079       3.4       3      20 ..     370     387 ..     369     393 .. 0.89

  Alignments for each domain:
  == domain 1  score: 4.8 bits;  conditional E-value: 0.044
                EEEESTTCCHHHHHHHHH.C CS
        cobW  4 vltGflGsGKTtLlnhll.e 22
                 l+G  G+GK++Ll+ l+ +
  KOO25295.1 48 ALVGANGAGKSSLLKVLCgK 67
                6899***********99842 PP

  == domain 2  score: 7.2 bits;  conditional E-value: 0.0079
                 EEEEESTTCCHHHHHHHH CS
        cobW   3 tvltGflGsGKTtLlnhl 20 
                 ++++G+ G+GK+tLl++l
  KOO25295.1 370 IGVVGPNGAGKSTLLQAL 387
                 5799***********986 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.0   0.1    0.0091       3.9      30      54 ..      41      65 ..      32      81 .. 0.89
   2 ?   -2.2   0.1       5.9   2.5e+03      80     101 ..     124     145 ..     108     197 .. 0.62
   3 ?    4.5   0.0     0.054        23      35      53 ..     369     387 ..     362     398 .. 0.84

  Alignments for each domain:
  == domain 1  score: 7.0 bits;  conditional E-value: 0.0091
      AAA_25 30 lpagelallaGapgtGKttlaldla 54
                +++g+  +l+Ga g+GK+ l+  l+
  KOO25295.1 41 IARGAKLALVGANGAGKSSLLKVLC 65
                679999*************987766 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 5.9
      AAA_25  80 EdsedelrrRlravgealrdda 101
                 +d+e++  +R+ ++ +a++  +
  KOO25295.1 124 DDGESDASERVGRAAAAMDKAD 145
                 4555555566666655553222 PP

  == domain 3  score: 4.5 bits;  conditional E-value: 0.054
      AAA_25  35 lallaGapgtGKttlaldl 53 
                  + ++G+ g+GK+tl+  l
  KOO25295.1 369 RIGVVGPNGAGKSTLLQAL 387
                 56689**********9776 PP

>> ATP-synt_ab  ATP synthase alpha/beta family, nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.1   0.0    0.0022      0.96       6      52 ..      36      82 ..      34      93 .. 0.82
   2 ?    1.7   0.0       0.4   1.7e+02      11      35 ..     364     388 ..     353     394 .. 0.83

  Alignments for each domain:
  == domain 1  score: 9.1 bits;  conditional E-value: 0.0022
                 HHHS-EBTT-EEEEEESTTSSHHHHHHHHHHHSSTSSEEEEEEESEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  ATP-synt_ab  6 DalfpivqGqrtlipgafgvGktvisqslskqsnsddaiiyvgiGer 52
                 D  f i++G +++++ga+g Gk+ +++ l+ + + d+ ++ ++ G r
   KOO25295.1 36 DISFAIARGAKLALVGANGAGKSSLLKVLCGKLQPDTGSVDIARGVR 82
                 77899*********************999988766655666555555 PP

  == domain 2  score: 1.7 bits;  conditional E-value: 0.4
                  EBTT-EEEEEESTTSSHHHHHHHHH CS
                  xxxxxxxxxxxxxxxxxxxxxxxxx RF
  ATP-synt_ab  11 ivqGqrtlipgafgvGktvisqsls 35 
                  +++  r++++g +g Gk++++q+l 
   KOO25295.1 364 FGRKDRIGVVGPNGAGKSTLLQALQ 388
                  5677899**************9885 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6   0.0     0.018       7.5       2      36 ..      47      81 ..      46     115 .. 0.82
   2 ?    4.5   0.1     0.076        32       4      22 ..     372     390 ..     370     398 .. 0.87

  Alignments for each domain:
  == domain 1  score: 6.6 bits;  conditional E-value: 0.018
                EEEE--SSSSHHHHHHHGGGGBS--EEEEE--TT- CS
       AAA_5  2 vlLvGppGtgKselaerlaaalnreveyvqltrdt 36
                + LvG+ G gKs+l + l+  l+  +  v + r+ 
  KOO25295.1 47 LALVGANGAGKSSLLKVLCGKLQPDTGSVDIARGV 81
                569***************99997666555555555 PP

  == domain 2  score: 4.5 bits;  conditional E-value: 0.076
                 EE--SSSSHHHHHHHGGGG CS
       AAA_5   4 LvGppGtgKselaerlaaa 22 
                 +vGp G gKs+l + l   
  KOO25295.1 372 VVGPNGAGKSTLLQALQGH 390
                 59***********998765 PP

>> AAA_17  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.3   0.3      0.98   4.2e+02       1      19 [.      50      68 ..      50      74 .. 0.85
   2 ?   10.5   0.0    0.0014      0.61       1      39 [.     373     414 ..     373     432 .. 0.84

  Alignments for each domain:
  == domain 1  score: 1.3 bits;  conditional E-value: 0.98
                EE-TTSSHHHHHHHHHHHH CS
      AAA_17  1 lGgPGsGKgtqceklveky 19
                +G  G+GK+ +++ l  k+
  KOO25295.1 50 VGANGAGKSSLLKVLCGKL 68
                799********98887665 PP

  == domain 2  score: 10.5 bits;  conditional E-value: 0.0014
                 EE-TTSSHHHHHHHHHHHHTEE..EEEHHHHHH.HHHHTTTS CS
      AAA_17   1 lGgPGsGKgtqceklvekygft..hlsaGdllr.eeakrggl 39 
                 +G+ G+GK+t+++ l+ ++ +   h++ G+ +r    +++gl
  KOO25295.1 373 VGPNGAGKSTLLQALQGHLPLLdgHIECGETVRfGHYEQRGL 414
                 79****************976445999999999656666666 PP

>> PduV-EutP  Ethanolamine utilisation - propanediol utilisation
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.9   0.1       0.2        84       3      23 ..      46      66 ..      44      70 .. 0.87
   2 ?    7.9   0.0    0.0054       2.3       3      24 ..     369     390 ..     367     398 .. 0.90

  Alignments for each domain:
  == domain 1  score: 2.9 bits;  conditional E-value: 0.2
   PduV-EutP  3 killiGkvgsGKttLtqalkg 23
                k+ l+G+ g+GK +L + l g
  KOO25295.1 46 KLALVGANGAGKSSLLKVLCG 66
                7789***********999866 PP

  == domain 2  score: 7.9 bits;  conditional E-value: 0.0054
   PduV-EutP   3 killiGkvgsGKttLtqalkge 24 
                 +i ++G+ g+GK tL qal+g+
  KOO25295.1 369 RIGVVGPNGAGKSTLLQALQGH 390
                 7789***************985 PP

>> MukB  MukB N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.0   0.1     0.011       4.5      30      55 ..      48      73 ..      36      80 .. 0.88
   2 ?    3.2   0.0      0.16        68      31      46 ..     372     387 ..     358     394 .. 0.83

  Alignments for each domain:
  == domain 1  score: 7.0 bits;  conditional E-value: 0.011
                HHHS--SHHHHHHHHHHHHHHS--TT CS
        MukB 30 tlsGgnGaGksttmaafvtaliPdls 55
                +l G+nGaGks  +  +   l Pd  
  KOO25295.1 48 ALVGANGAGKSSLLKVLCGKLQPDTG 73
                799**************999999975 PP

  == domain 2  score: 3.2 bits;  conditional E-value: 0.16
                 HHS--SHHHHHHHHHH CS
        MukB  31 lsGgnGaGksttmaaf 46 
                 + G nGaGkst + a+
  KOO25295.1 372 VVGPNGAGKSTLLQAL 387
                 5699*******99887 PP

>> TsaE  Threonylcarbamoyl adenosine biosynthesis protein TsaE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.1   0.0     0.025        10      15      44 ..      42      69 ..      26      76 .. 0.79
   2 ?    4.1   0.0       0.1        43      19      42 ..     367     390 ..     351     399 .. 0.79

  Alignments for each domain:
  == domain 1  score: 6.1 bits;  conditional E-value: 0.025
                HHCHTEEEEEEESTTSSHHHHHHHHHHHTT CS
        TsaE 15 akalgdvilLeGdLGaGKTtlvrglakalg 44
                a+  g+ ++L G  GaGK+ l + l+ +l+
  KOO25295.1 42 AR--GAKLALVGANGAGKSSLLKVLCGKLQ 69
                33..6679***************9998875 PP

  == domain 2  score: 4.1 bits;  conditional E-value: 0.1
                 TEEEEEEESTTSSHHHHHHHHHHH CS
        TsaE  19 gdvilLeGdLGaGKTtlvrglaka 42 
                 +d i   G+ GaGK+tl ++l  +
  KOO25295.1 367 KDRIGVVGPNGAGKSTLLQALQGH 390
                 556788999**********98655 PP

>> FtsK_SpoIIIE  FtsK/SpoIIIE family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.4   0.0     0.023       9.9      38      59 ..      44      64 ..      29      68 .. 0.82
   2 ?    4.0   0.0     0.062        26      44      59 ..     372     387 ..     362     388 .. 0.93

  Alignments for each domain:
  == domain 1  score: 5.4 bits;  conditional E-value: 0.023
                  S-.SEEEE--TTSSHHHHHHHH CS
  FtsK_SpoIIIE 38 mashllvaGatgsGKStalntL 59
                   a  l ++Ga g GKS  l++L
    KOO25295.1 44 GA-KLALVGANGAGKSSLLKVL 64
                  44.7899************987 PP

  == domain 2  score: 4.0 bits;  conditional E-value: 0.062
                   EE--TTSSHHHHHHHH CS
  FtsK_SpoIIIE  44 vaGatgsGKStalntL 59 
                   v+G  g GKSt l++L
    KOO25295.1 372 VVGPNGAGKSTLLQAL 387
                   89************98 PP

>> IstB_IS21  IstB-like ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.5   0.0      0.13        54      44      65 ..      41      62 ..      33      75 .. 0.85
   2 ?    5.9   0.0     0.023       9.7      46      67 ..     366     387 ..     351     406 .. 0.89

  Alignments for each domain:
  == domain 1  score: 3.5 bits;  conditional E-value: 0.13
   IstB_IS21 44 iekkenivllGpsGvGKshlai 65
                i++ + ++l+G  G+GKs l  
  KOO25295.1 41 IARGAKLALVGANGAGKSSLLK 62
                678899************8865 PP

  == domain 2  score: 5.9 bits;  conditional E-value: 0.023
   IstB_IS21  46 kkenivllGpsGvGKshlaial 67 
                 +k+ i ++Gp G+GKs l  al
  KOO25295.1 366 RKDRIGVVGPNGAGKSTLLQAL 387
                 678899************9998 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.9   0.1     0.044        19      21      39 ..      47      65 ..      38      83 .. 0.80
   2 ?   -1.6   0.1       4.3   1.8e+03      51      96 ..     138     198 ..     111     212 .. 0.54
   3 ?    8.3   0.0     0.004       1.7      23      41 ..     372     390 ..     364     412 .. 0.88

  Alignments for each domain:
  == domain 1  score: 4.9 bits;  conditional E-value: 0.044
      AAA_30 21 avltGpAGtGKttalkalr 39
                 +l+G+ G+GK+ +lk+l 
  KOO25295.1 47 LALVGANGAGKSSLLKVLC 65
                5799************985 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 4.3
      AAA_30  51 glAptgkaAkvLaeelg..ieastiakllkrlk.............grarlepgtllivDE 96 
                 ++A  ++ A  ++ee++   ++  +++ll+r +             ++a l++ +ll+ DE
  KOO25295.1 138 AAAMDKADAWGIEEEMQrlCATLEVDHLLSRDAsslsggerkrvalAAALLSQPDLLLLDE 198
                 2222333333344444422355556666666666666666666665444455556666666 PP

  == domain 3  score: 8.3 bits;  conditional E-value: 0.004
      AAA_30  23 ltGpAGtGKttalkalrea 41 
                 ++Gp G+GK+t+l+al+ +
  KOO25295.1 372 VVGPNGAGKSTLLQALQGH 390
                 89************99765 PP

>> NB-ARC  NB-ARC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.2   0.0      0.41   1.7e+02      23      41 ..      47      65 ..      42      79 .. 0.83
   2 ?    7.9   0.0    0.0035       1.5      22      50 ..     369     397 ..     357     495 .. 0.91

  Alignments for each domain:
  == domain 1  score: 1.2 bits;  conditional E-value: 0.41
                EEEEESTTSSHHHHHHHHC CS
      NB-ARC 23 valvGmgGvGKttlakqil 41
                +alvG  G GK+ l+k   
  KOO25295.1 47 LALVGANGAGKSSLLKVLC 65
                799***********98665 PP

  == domain 2  score: 7.9 bits;  conditional E-value: 0.0035
                 EEEEEESTTSSHHHHHHHHCCSHCCCCCC CS
      NB-ARC  22 vvalvGmgGvGKttlakqilnksdevegr 50 
                  +++vG  G GK+tl++    ++  ++g+
  KOO25295.1 369 RIGVVGPNGAGKSTLLQALQGHLPLLDGH 397
                 689*************9988887777776 PP

>> Guanylate_kin  Guanylate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.7   0.0     0.052        22       5      34 ..      47      77 ..      43      87 .. 0.77
   2 ?    4.7   0.0     0.051        22       7      30 ..     372     395 ..     366     413 .. 0.81

  Alignments for each domain:
  == domain 1  score: 4.7 bits;  conditional E-value: 0.052
                   EEEESTTTSSHHHHHHHHHHHSTTTEE.E-- CS
  Guanylate_kin  5 vvlvgpsgaGksslkkaLlselpekfg.vsv 34
                   + lvg++gaGkssl k L  +l+   g v +
     KOO25295.1 47 LALVGANGAGKSSLLKVLCGKLQPDTGsVDI 77
                   679**************98776555443555 PP

  == domain 2  score: 4.7 bits;  conditional E-value: 0.051
                    EESTTTSSHHHHHHHHHHHSTTTE CS
  Guanylate_kin   7 lvgpsgaGksslkkaLlselpekf 30 
                    +vgp+gaGks+l +aL  +lp  +
     KOO25295.1 372 VVGPNGAGKSTLLQALQGHLPLLD 395
                    79*************987777655 PP

>> FeoB_N  Ferrous iron transport protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.8   0.0     0.022       9.2       2      24 ..      46      68 ..      45      72 .. 0.90
   2 ?    3.0   0.0      0.16        67       3      22 ..     370     389 ..     368     392 .. 0.89

  Alignments for each domain:
  == domain 1  score: 5.8 bits;  conditional E-value: 0.022
                EEEEEESTTSSHHHHHHHHHTTS CS
      FeoB_N  2 tvalvGnpnvGkttlfnaltgak 24
                ++alvG   +Gk++l+  l+g+ 
  KOO25295.1 46 KLALVGANGAGKSSLLKVLCGKL 68
                689*****************975 PP

  == domain 2  score: 3.0 bits;  conditional E-value: 0.16
                 EEEEESTTSSHHHHHHHHHT CS
      FeoB_N   3 valvGnpnvGkttlfnaltg 22 
                 + +vG   +Gk+tl+ al g
  KOO25295.1 370 IGVVGPNGAGKSTLLQALQG 389
                 7799*99**********988 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (561 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       460  (0.0256568); expected 358.6 (0.02)
Passed bias filter:                      390  (0.0217525); expected 358.6 (0.02)
Passed Vit filter:                       108  (0.00602376); expected 17.9 (0.001)
Passed Fwd filter:                        42  (0.00234257); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              42  [number of targets reported over threshold]
# CPU time: 0.67u 0.28s 00:00:00.95 Elapsed: 00:00:00.45
# Mc/sec: 3720.07
//
Query:       KOO25296.1  [L=130]
Description: hypothetical protein Ctob_009519 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (130 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       253  (0.0141112); expected 358.6 (0.02)
Passed bias filter:                      248  (0.0138323); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.23s 00:00:00.59 Elapsed: 00:00:00.38
# Mc/sec: 1015.60
//
Query:       KOO25297.1  [L=310]
Description: phosphorylase b kinase gamma catalytic testis liver isoform [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    5.2e-56  189.9   0.0      6e-56  189.7   0.0    1.0  1  Pkinase         Protein kinase domain
    2.3e-24   86.1   0.0      3e-24   85.7   0.0    1.0  1  Pkinase_Tyr     Protein tyrosine kinase
    1.9e-09   37.3   0.0    2.9e-09   36.7   0.0    1.4  2  Kinase-like     Kinase-like
    0.00072   18.4   0.0    0.00092   18.1   0.0    1.2  1  Pkinase_fungal  Fungal protein kinase
  ------ inclusion threshold ------
      0.039   13.3   0.0      0.062   12.6   0.0    1.2  1  Kdo             Lipopolysaccharide kinase (Kdo/WaaP) family


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  189.7   0.0   1.7e-59     6e-56       3     264 .]      52     307 ..      50     307 .. 0.92

  Alignments for each domain:
  == domain 1  score: 189.7 bits;  conditional E-value: 1.7e-59
                 EEEEEEEESSEEEEEEEETTTTEEEEEEEEECHCHCHHHHHHHHHHHHHHHHHSCTTB--EEEEEEESSEEEEEEE--TTEBHHHHHH..HHSS--HHH CS
     Pkinase   3 kleklGeGsfGkVykaveketgkivAvKkikkekakkkkekkvlrEikilkklkhpnivrlyevfeekdelylvleyveggeladlle..rkgslseee 99 
                 ++ +lG+G fG+V+ ++++++g++ A K+++ + a++++e   lrE ++l   +h+++v+l++vf+++++l++++e+++++ l+++++    g+l+e e
  KOO25297.1  52 EVARLGRGCFGSVLHVRDHASGRMAAAKVVASSAARDDDE-CPLREPELLSLANHQHVVQLLDVFQSPRTLFILQEVARTD-LMSHVSsrPAGVLDEPE 148
                 6789*****************************9999775.99************************************88.666666577788***** PP

                 HHHHHHHHHHHHHHHHHTTEE-SS-SGGGEEEETTTEEEE-SGTTSEESSSSCSBCTTTSCGGGS-HHHH.....TTSCBSHHHHHHHHHHHHHHHHHS CS
     Pkinase 100 akkiakqilegleylHskgiiHrDlKpeNiLidekgelKitDFGlakelessskltsfvgtseYlAPEvl.....keneyskkvDvWslGvilyelltg 193
                 ++  ++++l+++++lH  +i+HrD+K  N+L+ e ge++++DFGla +l ++  l+s++gt++YlAPE++     + ++y+++vD+W++G++ly ll g
  KOO25297.1 149 TRGHLASLLSAVQHLHGLQIVHRDIKATNVLLTELGEVRLADFGLAVRLPENGLLSSVCGTHDYLAPEMIrcghgEVEGYGTSVDLWGVGLLLYALLVG 247
                 **********************************************************************88776669********************* PP

                 S-STTTSSHHHHHHHHHHTHHHHHHHCTSHH...HHHTTS-HHHHHHHHHHT-SSGCCSTTHHHHHTSGGG CS
     Pkinase 194 kppfsgekgkekvekeldqlekilkilgetkeklpeaseiseeakdllkkllkkdpkkRltaeellqhpyl 264
                  +pf+ +++       + +   ++ il   ++++p + ++se+a++l+++ll  d   Rl+a+ +l++p+l
  KOO25297.1 248 GNPFERDTD-------IAT---LQAIL-AGRFEFPSDATLSEDARSLVHQLLVTDSIGRLSAKGALREPWL 307
                 *****3333.......333...33344.3489**************************************7 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   85.7   0.0   8.3e-28     3e-24       5     228 ..      54     274 ..      51     299 .. 0.85

  Alignments for each domain:
  == domain 1  score: 85.7 bits;  conditional E-value: 8.3e-28
                  EEEEEESSEEEEEEEEETTTTSSEEEEEEEEESTTSSHHHHHHHHHHHHHHHTS-BTTB--EEEEEESSSSEEEEEE--TTEBHHHHHHHTCTTTSBH CS
  Pkinase_Tyr   5 kklGeGafGkVvegtlkgekekkevkVavKtlkeeateeekeelleeakimkklkhpnivkllgvctkeepllivteyvkgGdLlkfLrkkekekltl 102
                   +lG+G fG+V + + +     +    a K++ ++a +++ e  l+e ++++  +h+++v+ll v  + ++l+i+ e v+  dL +++ ++    l+ 
   KOO25297.1  54 ARLGRGCFGSVLHVRDH----ASGRMAAAKVVASSAARDDDECPLREPELLSLANHQHVVQLLDVFQSPRTLFILQE-VARTDLMSHVSSRPAGVLDE 146
                  58**********99888....77888999**********9**************************97666655555.67789999999999****** PP

                  HHHHHHHHHHHHHHHHHHHTTEEEST-SGGGEEEEETTEEEE-STTTHEETTTSSEEEETTSSTSGGGGS-HHHHHHSE.....EEHHHHHHHHHHHH CS
  Pkinase_Tyr 103 kdllsfalqvAkGmeyLeskklvHrdlaarNvLlsenkvvkisDfGLardiekddeyvkkeeaklpvkWmapEslkekk.....ftsksDvWsfGvll 195
                   ++    + + +++++L+  ++vHrd+ a NvLl+e   v+++DfGLa ++    e    ++      ++apE+++ ++     + ++ D W  G ll
   KOO25297.1 147 PETRGHLASLLSAVQHLHGLQIVHRDIKATNVLLTELGEVRLADFGLAVRL---PENGLLSSVCGTHDYLAPEMIRCGHgevegYGTSVDLWGVGLLL 241
                  ***************************************************...33334455566789********99889999************** PP

                  HHHHTTSSGTTTTSHHHHHHHHH.HTTEES-BBT CS
  Pkinase_Tyr 196 wEiftlgespypglkneevlekl.kegkrlekpe 228
                  + ++  g +p+++ ++  +l+++   + + +  +
   KOO25297.1 242 YALLV-GGNPFERDTDIATLQAIlAGRFEFPSDA 274
                  ***99.9999998877777777724444455544 PP

>> Kinase-like  Kinase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.8   0.0       1.8   6.4e+03      19      46 ..      55      82 ..      50      90 .. 0.74
   2 !   36.7   0.0     8e-13   2.9e-09     152     282 ..     155     289 ..     104     295 .. 0.82

  Alignments for each domain:
  == domain 1  score: -3.8 bits;  conditional E-value: 1.8
  Kinase-like 19 llkkgdrsvvfevkdqetgeplavkvfl 46
                  l++g ++ v++v+d + g   a kv  
   KOO25297.1 55 RLGRGCFGSVLHVRDHASGRMAAAKVVA 82
                 5777888889999999988888777765 PP

  == domain 2  score: 36.7 bits;  conditional E-value: 8e-13
  Kinase-like 152 qlirlaanLqakglvhgkftvdnllldekgglmlggftaLvragtkvvlseve..kgfaPpEllgsrggytrknktkmthkldaWqlGlviyriwclk 247
                   l+  +++L+ +++vh +++++n+ll e g + l +f+  vr  +++ ls+v+  + +  pE++    g    +   +  ++d W++Gl  y +    
   KOO25297.1 155 SLLSAVQHLHGLQIVHRDIKATNVLLTELGEVRLADFGLAVRLPENGLLSSVCgtHDYLAPEMIRCGHG----EVEGYGTSVDLWGVGLLLYALLVGG 248
                  577889***********************************************4444557888766444....6788999****************99 PP

  Kinase-like 248 lPltlateeakeew......kfklckkipekvkaLlkkfLq 282
                   P++ +t+ a  +       +f   +  +e  + L++++L 
   KOO25297.1 249 NPFERDTDIATLQAilagrfEFPSDATLSEDARSLVHQLLV 289
                  9*999998766544344433666666777777777777775 PP

>> Pkinase_fungal  Fungal protein kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.1   0.0   2.6e-07   0.00092     310     387 ..     154     219 ..      64     228 .. 0.81

  Alignments for each domain:
  == domain 1  score: 18.1 bits;  conditional E-value: 2.6e-07
  Pkinase_fungal 310 ealrDaIkghrsLflkagiLHrDiSenNilitdskkegerkglLiDLDlakelsddssesgarertGTleFmaievlk 387
                     ++l  a+   + L+   +i+HrDi + N+l+t     +  +  L+D+ la+ l ++          GT  ++a e+++
      KOO25297.1 154 ASLLSAV---QHLH-GLQIVHRDIKATNVLLT-----ELGEVRLADFGLAVRLPENGLL---SSVCGTHDYLAPEMIR 219
                     4455555...5566.666**************.....567889********99963333...4588999999988887 PP

>> Kdo  Lipopolysaccharide kinase (Kdo/WaaP) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   1.7e-05     0.062     114     166 ..     141     191 ..     115     196 .. 0.77

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 1.7e-05
         Kdo 114 e..laeelkrallkavgrliaklhragvnHadlyaknillqqeeeeeaeiwliDl 166
                    l+e  +r +l  +  +++ lh +++ H+d+ a n+ll + +    e+ l D+
  KOO25297.1 141 AgvLDEPETRGHLASLLSAVQHLHGLQIVHRDIKATNVLLTELG----EVRLADF 191
                 3467777888888999999*********************9988....6666666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (310 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       263  (0.014669); expected 358.6 (0.02)
Passed bias filter:                      242  (0.0134977); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.43u 0.22s 00:00:00.65 Elapsed: 00:00:00.38
# Mc/sec: 2458.43
//
Query:       KOO25298.1  [L=316]
Description: aldose reductase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
      6e-53  179.9   0.0    2.8e-52  177.7   0.0    1.8  1  Aldo_ket_red  Aldo/keto reductase family


Domain annotation for each model (and alignments):
>> Aldo_ket_red  Aldo/keto reductase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  177.7   0.0   1.6e-56   2.8e-52       2     291 ..      24     287 ..      23     290 .. 0.93

  Alignments for each domain:
  == domain 1  score: 177.7 bits;  conditional E-value: 1.6e-56
                   EEEE-SSS-ST.TS-HHHHHHHHHHHHHTT--EEE--TT-TTTHHHHHHHHHHHH....-TTTGGG-EEEEEE--SSSTTSSSS-HHHHHHHHHHHH CS
  Aldo_ket_red   2 lglGtwqlgskeeiskeealellrraleaGinffDtAevYgkgqseellGealkk....srkkreeviiatKvdlrdaeiksglskeniresleesl 94 
                   +glGtw      + ++ e+ +++++a+ +G++++D+A  Y   ++e+++Geal +        re++ i++K+      ++++++++++ ++++++l
    KOO25298.1  24 VGLGTW------KSQPGEVKAAVKTAVRCGYRHIDCAACY---KNEKEVGEALTElfaeGVCTREDLWITSKL------WNDHHTAADVPKACDKTL 105
                   688888......45578***********************...*************9988889**********......****************** PP

                   HHHT-S-EEEEEE-S--TTS-........HHHHHHHHHHHHHTTSEEEEEEES--HHHHHHHHHTTT--EEEEE-B-BTT-HHHHTTHHHHHHHTT- CS
  Aldo_ket_red  95 krLgtdyvDllllHrpdpslp.......sieevldaleelvkeGkiraiGvSnfsveqlekakkkkkvkivavqveynllreleeegllelckkkgv 184
                     L+++yvDl+l+H+p ++         s+ee++ a+e lv +Gk+r+iGvSn s+++l+++++ +kv ++++qve ++l    +e ll+ c+k+g 
    KOO25298.1 106 ADLQLSYVDLYLIHWPVVANFtgpelspSYEETWTAMEALVAAGKARSIGVSNLSAKKLKAMRSYAKVFPAVNQVELHPL--WRQEDLLRECAKLGT 200
                   *****************9999999********************************************************..9999*********** PP

                   EEEEBSTTGGGTTGTTTSS---SSSCCC-------TS-HHHHHHHHHHHHHHHHTT--HHHHHHHHHTTSTT-SEEEE--SSHHHHHHHHGGGG--- CS
  Aldo_ket_red 185 pliaysplggGlltgkyqseedkedkeprkdlkrdertsknldaaeelselakehgvslaqlalryalsqpavgivipgasnieqlednldalelkl 281
                    l aysplg+    +  +                      +   a e++++a+  g+s+aq+ +r+a+  +++++v+p++ +++++e+nld+l++ l
    KOO25298.1 201 HLTAYSPLGSPDSATMIMHV------------------GATVMEATEVQRIAAAMGKSPAQVLIRWAV--QRGTSVVPKSVTPSRIEANLDVLSWAL 277
                   *********75444333322..................234578999*********************..9************************** PP

                   -HHHHHHHHH CS
  Aldo_ket_red 282 seeevaelde 291
                   ++ ++ae+ +
    KOO25298.1 278 DDTQMAEISA 287
                   *******986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (316 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       540  (0.0301188); expected 358.6 (0.02)
Passed bias filter:                      445  (0.0248201); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.27s 00:00:00.70 Elapsed: 00:00:00.40
# Mc/sec: 2390.94
//
Query:       KOO25299.1  [L=237]
Description: hypothetical protein Ctob_009566 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (237 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       450  (0.025099); expected 358.6 (0.02)
Passed bias filter:                      363  (0.0202465); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.43u 0.23s 00:00:00.66 Elapsed: 00:00:00.40
# Mc/sec: 1769.94
//
Query:       KOO25300.1  [L=699]
Description: x-ray repair cross-complementing protein 6 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.2e-32  113.3   0.0    1.7e-32  112.8   0.0    1.2  1  Ku              Ku70/Ku80 beta-barrel domain
    4.9e-26   91.8   0.0    2.1e-25   89.8   0.0    1.8  1  Ku_N            Ku70/Ku80 N-terminal alpha/beta domain
    1.2e-08   34.5   0.0    2.3e-08   33.6   0.0    1.5  1  SAP             SAP domain
  ------ inclusion threshold ------
      0.011   16.4   0.0      0.029   15.1   0.0    1.6  1  Ku_C            Ku70/Ku80 C-terminal arm
       0.13   12.5   0.1       0.24   11.6   0.1    1.3  1  CobA_CobO_BtuR  ATP:corrinoid adenosyltransferase BtuR/CobO/C


Domain annotation for each model (and alignments):
>> Ku  Ku70/Ku80 beta-barrel domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  112.8   0.0   4.8e-36   1.7e-32      11     202 ..     325     515 ..     315     517 .. 0.86

  Alignments for each domain:
  == domain 1  score: 112.8 bits;  conditional E-value: 4.8e-36
          Ku  11 lykateeakkpkfkkldketnepvkvetkyvcsdtge.vdeedivkgyeyGgevvpltkeelekiks..fdskglkllgFvplseilkeylsikssyfi 106
                 + +  + + kp  +kl + +n+p+++e+   +++tg  +d+ d+ kgy+yGg+ v +++ el+++ +  f  +gl+llgF+++s+ lk +++  +++f+
  KOO25300.1 325 MVSVLRPTPKPAQVKLFALDNTPLQSESLQRDASTGAvIDKGDVFKGYNYGGKWVFFEPYELQSFGKegF-APGLTLLGFKDASR-LKLQHNLGPAKFV 421
                 56667778889999*********************766*************************8655555.************99.************* PP

          Ku 107 yPddkdekgstkafsaLveamleskkvaivrfvlrskskprlvaLvPqeeelsseee...ke.glvlvtLpfaddiRslkfpsldeeeeekknkpteeq 201
                  P +k   gst a+ aLv+am++++kv+++r+   +  + rlvaL+Pqe   + +++    + gl++ +Lpf+ddiR ++ p        ++ +++  q
  KOO25300.1 422 EPCEK-VPGSTAAMGALVRAMVSKGKVGLARMLKGKIGQARLVALLPQEHMVDPQTGatkLPcGLHVLELPFSDDIRAVDKPAA-----LTEDQFEPGQ 514
                 **555.556888************************************888888766*99556**************8888877.....1334555555 PP

          Ku 202 l 202
                 l
  KOO25300.1 515 L 515
                 5 PP

>> Ku_N  Ku70/Ku80 N-terminal alpha/beta domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   89.8   0.0   5.8e-29   2.1e-25       1     178 [.      37     236 ..      37     252 .. 0.93

  Alignments for each domain:
  == domain 1  score: 89.8 bits;  conditional E-value: 5.8e-29
                 EEEEEEE-SHHHHCTTCCSCC.HHHHHHHHHHHHHHHHHHCTCSEEEEEEEESSSSTBS...TTTCTTEEEEEECCCHHHHHHHHHHCCHHHCCH.... CS
        Ku_N   1 avvfviDvspaMfesskeees.pfelalkciaellkrkvisrskDlIavvlygtdesen...keqlenitvlreldlpdaellkelkqiveseda.... 91 
                 +++fviD++ +M  +++  ++ +f  al c    + ++++s ++Dl++v+l+gt++ +     +++++i+vl+el++p+a  + +l+ iv+ e+a    
  KOO25300.1  37 SILFVIDARQSMCTPVESGKPsHFSKALGCALACMRDRILSGESDLVGVLLFGTEKMKVpngHQNFPHIYVLQELEQPSAASMRQLELIVKAEEAarvg 135
                 69******************99**********************************99889*****************************999988999 PP

                 ..............HHHCCCTTSS-TTHHHHHHHHHHHHHHTTSSESEEEEEEEESSSSTCC.GHHHHHHHHHHHHHHHHHHCTEEEEEEEC..TSSSC CS
        Ku_N  92 ..............sveglaedssqasllsaLivclellqkvgkklskkriflftdlddpfe.dsdklelilqklkakDlrderieldllkL..kkakk 173
                               + +g+a +ss  +l ++L+v++++++ +++k+ ++r+ l+td d+p + +++  +++l++    Dl+d r+ +++++    +++ 
  KOO25300.1 136 gaaselddaaaaaaEAFGHADSSSALELANVLWVTSMIFN-SAAKNTRRRLYLMTDDDSPCAgSAAARSRALTR--SRDLQDARVWMEPFFFapAPPGI 231
                 9999999999988778999999999************999.9*******************99999********..*************9997777777 PP

                 ECCTC CS
        Ku_N 174 fdine 178
                 fd +e
  KOO25300.1 232 FDLSE 236
                 77665 PP

>> SAP  SAP domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.6   0.0   6.4e-12   2.3e-08       1      31 [.     638     668 ..     638     672 .. 0.92

  Alignments for each domain:
  == domain 1  score: 33.6 bits;  conditional E-value: 6.4e-12
                 HTT--HHHHHHHHHHTT--TTS-HHHHHHHH CS
         SAP   1 lskltVaeLKeeLkkrGLptsGkKaeLieRL 31 
                 l+++t + LKe++k++GLp+ GkK +L++R+
  KOO25300.1 638 LESFTIPTLKEFCKANGLPVGGKKGDLVARV 668
                 689***************************7 PP

>> Ku_C  Ku70/Ku80 C-terminal arm
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.1   0.0     8e-06     0.029       7      87 ..     537     609 ..     534     621 .. 0.76

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 8e-06
                 ---HHHHHHHHHHHHHHTT---....---SS--HHHHHHHHH-....HHHHHHHHHHHHH......HHHHH......---THHHHHH CS
        Ku_C   7 fpNPsLqrhykiLqalAldedlpe..eledktlpkyeaidkragslleewkelfeleeedke....kkkekrkaededeepaakkak 87 
                 + NP+   h+++L+ lAl+    e     d tlp+  +++ +  ++le +++ f l++  +                    aak++k
  KOO25300.1 537 ISNPASATHFQYLECLALHVPGAEvvATVDGTLPDGAWLATKR-PQLEAFQQVFGLPKTAEAdaasG-------------VAAKRPK 609
                 78*****************9999999*********66666655.9***********96553223331.............3444444 PP

>> CobA_CobO_BtuR  ATP:corrinoid adenosyltransferase BtuR/CobO/CobP
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.1   6.8e-05      0.24      16      51 ..     430     463 ..     429     482 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 6.8e-05
  CobA_CobO_BtuR  16 ttAAlGlalRalgaglkvlvvqFlKgekesgElaal 51 
                     +tAA+G  +Ra+ +  kv +++ lKg+   g  +++
      KOO25300.1 430 STAAMGALVRAMVSKGKVGLARMLKGK--IGQARLV 463
                     8*************************4..6665555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (699 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       279  (0.0155614); expected 358.6 (0.02)
Passed bias filter:                      226  (0.0126053); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.56u 0.26s 00:00:00.82 Elapsed: 00:00:00.44
# Mc/sec: 4758.01
//
Query:       KOO25301.1  [L=380]
Description: hypothetical protein Ctob_009564 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        1.4    9.3  17.2        3.6    8.0   8.9    2.8  2  GNAT_like  GCN5-related N-acetyltransferase like domain


Domain annotation for each model (and alignments):
>> GNAT_like  GCN5-related N-acetyltransferase like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.4   1.2    0.0013        24      29      56 ..       6      33 ..       3      37 .. 0.91
   2 ?    8.0   8.9    0.0002       3.6       3      61 ..     106     173 ..     104     173 .. 0.76

  Alignments for each domain:
  == domain 1  score: 5.4 bits;  conditional E-value: 0.0013
   GNAT_like 29 AlaaAvWaaagdgrplrvdagDdaArka 56
                Ala  +W++  ++ ++ v+a D+aA++a
  KOO25301.1  6 ALADFMWTEMQKAITFSVEAMDEAAARA 33
                89999***999999**********9987 PP

  == domain 2  score: 8.0 bits;  conditional E-value: 0.0002
   GNAT_like   3 gWrvevdggaltvsgtga.......gdpldglRAlaaAvWa...aagdgrplrvdagDdaArkaLarlg 61 
                 gW+v+v++  +++s+t++        ++l  l A+a A+ +   +a d+ + + +a   +A++aL +l+
  KOO25301.1 106 GWTVDVTEALVQLSATAEaaqskdvTEALVQLSATAEAAQSkaiSASDALQ-GAAASAATAHDALSELS 173
                 9************999944577889999***********994433333333.55666677888888775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (380 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       819  (0.0456802); expected 358.6 (0.02)
Passed bias filter:                      380  (0.0211947); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.24s 00:00:00.72 Elapsed: 00:00:00.40
# Mc/sec: 2822.85
//
Query:       KOO25302.1  [L=177]
Description: bacteria-like protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.3e-05   25.0   0.0    2.5e-05   24.0   0.0    1.7  1  Redoxin   Redoxin


Domain annotation for each model (and alignments):
>> Redoxin  Redoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.0   0.0   1.4e-09   2.5e-05      53     128 ..      47     141 ..       7     159 .. 0.78

  Alignments for each domain:
  == domain 1  score: 24.0 bits;  conditional E-value: 1.4e-09
                 THHHHHHCSTTTEEEEEESSSHHHHHHHHH.....TT-TSEEEE-TTSHHHHHTT-TTEEE.GGG.................EEE-EEEEEEETTEEE CS
     Redoxin  53 klaellkekgvdvvavvadndafvkefwgk.....eglkfpvlsDgsaaftkalGlrleedaseg.................lrtpryavidedgkvv 128
                 +++ +l++ g+d+v++ ++nd  v+e+w+k      +  + +++D +aa+t+alG+ l+     g                  r++r+a+ + dg+++
  KOO25302.1  47 EIDGRLEAAGIDKVYIFCVNDGAVMEAWKKdqglaGSDLIEFVADVQAALTEALGIMLTGE---GkpygpgegpnfalgfhtKRCKRSAIYVVDGVIK 141
                 55667899*************************986667889*************665422...2234555666666666666666666666666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (177 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       221  (0.0123264); expected 358.6 (0.02)
Passed bias filter:                      211  (0.0117686); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.23s 00:00:00.59 Elapsed: 00:00:00.36
# Mc/sec: 1483.24
//
Query:       KOO25303.1  [L=81]
Description: thioredoxin h [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.2e-15   57.3   0.0    1.5e-15   57.0   0.0    1.0  1  Thioredoxin  Thioredoxin
     0.0041   16.5   0.0     0.0043   16.4   0.0    1.1  1  OST3_OST6    OST3 / OST6 family, transporter family
  ------ inclusion threshold ------
       0.12   12.1   0.1       0.12   12.1   0.1    1.0  1  P34-Arc      Arp2/3 complex, 34 kD subunit p34-Arc


Domain annotation for each model (and alignments):
>> Thioredoxin  Thioredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.0   0.0   2.5e-19   1.5e-15      35     102 ..      13      78 ..      10      79 .. 0.96

  Alignments for each domain:
  == domain 1  score: 57.0 bits;  conditional E-value: 2.5e-19
                  CHHHHHHHHHHHCTTTSEEEEEETTTSHHHHHHTT-SSSSEEEEEETTEEEEEEESS-HHHHHHHHHH CS
  Thioredoxin  35 alaPeleklaeelkdkvklakvdvdenedlakkyevegiPtlklfkngkevkkyegarekeklaaflk 102
                  ++aP++e+l+ e+  +v+++kvdvde e++a+ ++++++Pt++++k+g ++++++ga+e +k+++ ++
   KOO25303.1  13 RIAPVFEALSGEMP-DVVFVKVDVDELEEVAAACGIQAMPTFQFYKKGAKIHEFSGASE-DKIRQAIA 78 
                  69************.*******************************************9.99999886 PP

>> OST3_OST6  OST3 / OST6 family, transporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   0.0   7.3e-07    0.0043      72     110 ..      26      64 ..      11      80 .. 0.77

  Alignments for each domain:
  == domain 1  score: 16.4 bits;  conditional E-value: 7.3e-07
   OST3_OST6  72 kklfFakvdfdegkdvFqklglnsaPhlllfppkkgpke 110
                  +++F+kvd+de ++v +  g++  P + +++   + +e
  KOO25303.1  26 PDVVFVKVDVDELEEVAAACGIQAMPTFQFYKKGAKIHE 64 
                 579****************************99554442 PP

>> P34-Arc  Arp2/3 complex, 34 kD subunit p34-Arc
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.1     2e-05      0.12     105     162 ..       3      61 ..       1      78 [. 0.79

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 2e-05
                 EEEEE-S..SEEEEEEEE--SSSSHHHHHHHHHHHHH-----.------EEEE-SSS--S- CS
     P34-Arc 105 iyikpsk..drvtvifstvFkdetDkvlgkvFLqefvdarkr.aiqsaPqvlfsekepple 162
                 i++k+ +   r++ +f+ +  +  D+v+ kv + e+ ++  +  iq  P   f +k     
  KOO25303.1   3 IFVKTLTgkTRIAPVFEALSGEMPDVVFVKVDVDELEEVAAAcGIQAMPTFQFYKK--GAK 61 
                 777765433899***************************99999*****9998874..333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (81 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       509  (0.0283898); expected 358.6 (0.02)
Passed bias filter:                      438  (0.0244297); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.38u 0.24s 00:00:00.62 Elapsed: 00:00:00.40
# Mc/sec: 614.07
//
Query:       KOO25304.1  [L=485]
Description: hypothetical protein Ctob_009569 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.9e-38  132.2  16.4    1.9e-38  132.2  16.4    1.7  2  LrgB      LrgB-like family
    8.1e-06   25.7   7.0    8.1e-06   25.7   7.0    3.1  3  LrgA      LrgA family


Domain annotation for each model (and alignments):
>> LrgB  LrgB-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   0.5      0.65   5.8e+03      73      95 ..     146     168 ..     121     183 .. 0.48
   2 !  132.2  16.4   2.1e-42   1.9e-38       1     210 [.     245     469 ..     245     472 .. 0.97

  Alignments for each domain:
  == domain 1  score: -3.4 bits;  conditional E-value: 0.65
        LrgB  73 lkknllaillgllvgslvsllsa 95 
                   + ll i+ gl++++ +++l+a
  KOO25304.1 146 AARLLLVIVGGLACSIPLAALVA 168
                 33444444444444444333333 PP

  == domain 2  score: 132.2 bits;  conditional E-value: 2.1e-42
        LrgB   1 TllaYllakalykklkkpllnPvlvaivliillllllgis................yetYkegakllsllLgpatVaLAvpLYkqrellkknllaillg 83 
                 T++ Y++++++   + + +++P++++++ ++ +l ++                    +++ + ++ll ++Lgpat ++++ ++ +r+l+ +  +ai ++
  KOO25304.1 245 TVCGYVAGQKVVPVAAQRIVHPLITCTLSTLGALAAFAAAtgqpfrpflrgylvpgGAAFAAPGNLLLFMLGPATLSFGFQMFGRRRLMAESSRAISAA 343
                 8999******999999******************9999889999*******9999999***************************************** PP

        LrgB  84 llvgslvsllsavllakllglseelllsllpkSvTtpiAmevseelgGipsltavlviltGilGallgelllkllrikdpvarGlalGtashaiGtaka 182
                 ++++++++l+ ++++++ll+l+  + l+ l++ vT+p+A+e+++ l ++psl+a++v+ltG+l a +g+++l+ lri+ pvarGla+Gta+h++Gta+ 
  KOO25304.1 344 TVTSAIFGLFGTAVAGRLLSLPLPVRLAALSRQVTAPLAIEIAKLLSADPSLAATIVVLTGLLAANFGRVILDALRIDAPVARGLAMGTAGHGVGTAA- 441
                 ************************************************************************************************95. PP

        LrgB 183 lelgeeagafsslamvlaGiltallapl 210
                 +  ++ea  f++++m+l+++ +++l+++
  KOO25304.1 442 MASEKEAFPFAAIGMALNAATSTVLVSV 469
                 6678899**************9999875 PP

>> LrgA  LrgA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.7   7.0     9e-10   8.1e-06      10      93 ..      76     167 ..      68     168 .. 0.88
   2 ?   -1.3   0.4      0.25   2.2e+03      65      90 ..     256     281 ..     226     285 .. 0.67
   3 ?   -1.2   0.1      0.22     2e+03      66      92 ..     331     357 ..     309     371 .. 0.76

  Alignments for each domain:
  == domain 1  score: 25.7 bits;  conditional E-value: 9e-10
        LrgA  10 llplpiPgsviGlllLlllLl..........tkivklekveeaadfllkhlallFvPagvgvmeyldllkaellailvalvvstllvlvvtglv 93 
                 ++ + +P+++ G+llL+  L+          +    ++ + +++ f+ + lal+FvP  v +   l++   e++++l+++v ++++++  ++lv
  KOO25304.1  76 MCAIRFPSPLAGMLLLFGGLCatqalspalaS--RLEAALAPGCAFISRWLALFFVPNLVVLPLVLSMSPFEAARLLLVIVGGLACSIPLAALV 167
                 66799********************9997431..334569*******************************************99999888876 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 0.25
        LrgA  65 ldllkaellailvalvvstllvlvvt 90 
                 + + ++ ++  l+++++stl +l++ 
  KOO25304.1 256 VPVAAQRIVHPLITCTLSTLGALAAF 281
                 44555666666777777777776665 PP

  == domain 3  score: -1.2 bits;  conditional E-value: 0.22
        LrgA  66 dllkaellailvalvvstllvlvvtgl 92 
                  l++++  ai +a+v s ++ l+ t++
  KOO25304.1 331 RLMAESSRAISAATVTSAIFGLFGTAV 357
                 566777777888888888887777765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (485 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       598  (0.0333538); expected 358.6 (0.02)
Passed bias filter:                      288  (0.0160634); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.50u 0.24s 00:00:00.74 Elapsed: 00:00:00.41
# Mc/sec: 3557.02
//
Query:       KOO25305.1  [L=287]
Description: hypothetical protein Ctob_009570 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.1e-06   26.8   0.0    7.4e-06   25.9   0.0    1.3  1  PX        PX domain


Domain annotation for each model (and alignments):
>> PX  PX domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.9   0.0   4.1e-10   7.4e-06      13      95 ..     109     195 ..      99     204 .. 0.80

  Alignments for each domain:
  == domain 1  score: 25.9 bits;  conditional E-value: 4.1e-10
                 EETTSSEEEEEEEEEETTSSSEEEEEEEHHHHHHHHHHHHHHHT......TSTSTSSSTSGSSSSS..CTTSHHHHHHHHHHHHHHHHHHH CS
          PX  13 tsgskkhsyylyevelktgakewtvkRrYsdFeeLhskLlrkfp......rvkiPplPkkvlfgsv..rkkdeefiekrrkgLeeyLqrll 95 
                 +s ++ h +yl++v+ + g  +w++ Rr +d+  L   L+r+        + ++Pp+           +k+d++f+ +r +++++ L+  +
  KOO25305.1 109 RSAEQPHATYLISVTSERG-LKWETERRWNDLKTLEASLQRTDGetlrqhADSLPPFHAHGK---LfvDKFDPAFLSERAEQMQALLNGWA 195
                 34678899**********9.************************999665555555554443...2448****************999655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (287 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1482  (0.0826594); expected 358.6 (0.02)
Passed bias filter:                      507  (0.0282782); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.31s 00:00:00.79 Elapsed: 00:00:00.44
# Mc/sec: 1949.24
//
Query:       KOO25306.1  [L=1158]
Description: DNA-directed RNA polymerase i subunit rpa1 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.7e-83  279.0   0.0    4.9e-83  278.6   0.0    1.1  1  RNA_pol_Rpb1_5  RNA polymerase Rpb1, domain 5
      1e-50  172.2   0.0    2.1e-50  171.2   0.0    1.6  1  RNA_pol_Rpb1_2  RNA polymerase Rpb1, domain 2
    4.6e-33  114.4   0.0    1.1e-32  113.2   0.0    1.6  2  RNA_pol_Rpb1_3  RNA polymerase Rpb1, domain 3
    8.1e-17   61.1   0.0    1.6e-16   60.2   0.0    1.5  1  RNA_pol_Rpb1_4  RNA polymerase Rpb1, domain 4


Domain annotation for each model (and alignments):
>> RNA_pol_Rpb1_5  RNA polymerase Rpb1, domain 5
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  278.6   0.0   1.1e-86   4.9e-83       1     265 [.     529    1092 ..     529    1094 .. 0.96

  Alignments for each domain:
  == domain 1  score: 278.6 bits;  conditional E-value: 1.1e-86
                      B--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTEEEETTSEEEE.TTS-EEESSGGGTS.......................... CS
                      xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxx.......................... RF
  RNA_pol_Rpb1_5    1 GLkvkefffhtmggReGLiDtAvkTaesGYlqRrlvkaledvvvkyddtvrn.sggeivqflygedg.......................... 66  
                      G+ + +f+fh+m+gReGL+DtAvkT++sGYlqR+l+k+le + v yd+tvr+ ++g++vqf+ gedg                          
      KOO25306.1  529 GVRPPDFYFHCMAGREGLVDTAVKTSRSGYLQRCLIKHLEPLQVAYDHTVRStADGSVVQFIAGEDGldptrtkflekpgfyemnadvlqayw 621 
                      8899***********************************************73689************************************* PP

                      ............................................................................................. CS
                      ............................................................................................. RF
  RNA_pol_Rpb1_5   67 ............................................................................................. 66  
                                                                                                                   
      KOO25306.1  622 rppshaptsfsdaealevraalavkeaeaeaelkrdatrrglapkkicggyaptaarlsyappgsrlgqvseafdklveghvgqistrhapgg 714 
                      ********************************************************************************************* PP

                      ...............................B--TT-BHHHHHHHHHHHHHHCCCSSTTSSTCSSTSSSSSSHHHHHHHHTT.-SS-SS-EEE CS
                      ...............................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxx RF
  RNA_pol_Rpb1_5   67 ...............................lvepGeavGiiaaQSiGePgTQltlnTFHfaGvasknvtlGvprlkeilnv.sknikskslt 127 
                                                     l +pGeavG++aaQS+GeP+TQ+tlnTFH+aG +++nvtlG+pr++ei++v s++ +++ +t
      KOO25306.1  715 aagaswsvdggssklsadtwrtvmwrkyvsaLYQPGEAVGLLAAQSVGEPSTQMTLNTFHLAGRGEANVTLGIPRMREIIMVaSQHPSTPLMT 807 
                      **********************************************************************************99999****** PP

                      EEB-SSSSSCHHHCHHHHHHHSE...................................................................... CS
                      xxxxxxxxxxxxxxxxxxxxxxx...................................................................... RF
  RNA_pol_Rpb1_5  128 vllvdeeakelekakkvkkaiek...................................................................... 150 
                      + l+d+ ++ ++   ++ ka ek                                                                      
      KOO25306.1  808 LPLRDDPTHPMSA-DEASKAAEKlaaklsrlrlsdmleqdvadedaddakaasraarldeganfeepdeedkatlqkgrsaapeaawhpqrrr 899 
                      *****99655554.5555555556789999*************************************************************** PP

                      .................................................................................CBTTEEEEEEEE CS
                      .................................................................................xxxxxxxxxxxx RF
  RNA_pol_Rpb1_5  151 .................................................................................gikkikrilvke 162 
                                                                                                       ++++i+ ++v  
      KOO25306.1  900 pcppsrasasasaaddewlaalraklisgdnplvdfgethtpgsgvahatslwievelplrgerlllvplveetvtkvlvrATPSIEAANVLP 992 
                      **********************************************************************98888888888888888888888 PP

                      EEEEEEETEEEEEEECS--HHHHTTSTTTBETTTEEESSHHHHHHHHCHHHHHHHHHHHHHHHHHHTTS---HHHHHHHHHHHTTTSS---SS CS
                      xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  RNA_pol_Rpb1_5  163 aekgkeeekelvletegvnlsevlkveevvdageilsndiaeileilgieaarkallkeiqevykvqgvsvndrHlelivdqmtkkgeivavn 255 
                      a kgk+ +    + t+gvn+ ++ + ++ vd++ ++snd+ ++l+++g+eaar+++++ei++v  v+g++v+ rHl li+d+mt +g ++++n
      KOO25306.1  993 AGKGKSLP---SVMTSGVNFAALANLRREVDVNAVVSNDVYAVLKFYGVEAARATIVSEIKSVSGVYGIQVDPRHLGLIADYMTHEGAYKPLN 1082
                      88888775...678******************************************************************************* PP

                      TTCHCCSSSH CS
                      xxxxxxxxxx RF
  RNA_pol_Rpb1_5  256 rsGinkaels 265 
                      r G+++++++
      KOO25306.1 1083 RAGMESCSSP 1092
                      *****99875 PP

>> RNA_pol_Rpb1_2  RNA polymerase Rpb1, domain 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  171.2   0.0   4.8e-54   2.1e-50       1     164 [.       5     180 ..       5     182 .. 0.90

  Alignments for each domain:
  == domain 1  score: 171.2 bits;  conditional E-value: 4.8e-54
                     SEEESSEEEEEEEEESSS-TTEEEEEHHHHTTSEEEEE-STTTHHHHHHHHHHTTTSSSSEEEEESTTSSEEETTTT-SCHHCCTTTTS...... CS
  RNA_pol_Rpb1_2   1 GkrvdysaRsvispdpnlkldevgvPisvakkltvpeivtelnikklrklvengpevyPgasyvkredgsekklkakkrklakelekgd...... 89 
                     Gkrv+++ Rsvispdpn+ ++e+g+P ++ak+lt+pe++t++n+++lr+       v   a+    ++gs       +++++ +++         
      KOO25306.1   5 GKRVNFTCRSVISPDPNIGTHEIGIPDRFAKVLTYPEPITPWNVAELRQRSLFS-AVSDLARLSAAINGSGSGAFGGEQAMDAAVAGVAlgrsgk 98 
                     9***********************************************877644.4555777778888888888777777777777444777889 PP

                     ......EEEEE--TTSEEEEE-SSTTSGGGEEEEEEEEESS.SSEEEEGGGHCCCT--SSS-EEEEE--SSHHHHHHHHHCS CS
  RNA_pol_Rpb1_2  90 ......iverhvkdgdvvllNRqPsLhklsimahrvkvlek.ktlrlnlsvttayNaDFDGDemnlhlpqseearaEaeell 164
                           +v rh+++gd +l+NRqP+Lhk +imah+++vl + k++r++++++++yNaDFDGDemn+h+ q+e+araEa+ ++
      KOO25306.1  99 tassckKVWRHLRTGDALLVNRQPTLHKPGIMAHKARVLMGeKVIRMHYANCNTYNADFDGDEMNVHMCQNELARAEAYGIA 180
                     999999********************************9988************************************9886 PP

>> RNA_pol_Rpb1_3  RNA polymerase Rpb1, domain 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  113.2   0.0   2.3e-36   1.1e-32       1     157 []     185     369 ..     185     369 .. 0.89
   2 ?   -3.2   0.0       1.6   7.2e+03      91     130 ..     561     599 ..     549     603 .. 0.74

  Alignments for each domain:
  == domain 1  score: 113.2 bits;  conditional E-value: 2.3e-36
                     CSEETTTTEESSS--THHHHHHHHHSSTTEEEEHHHHHHHHHHSSSCCS.......SSSSSSSSBESSSEBEEHHHHHHCCCHCCCCEEEE..SS CS
  RNA_pol_Rpb1_3   1 nilspqsgkPvigivQDsllGvyllTkedvfidreeaqqllykgvgsds.......ktvtlrpailkpkelwtgkqtfsrilpneinyerk..ne 86 
                     +++ p +gkP+ g++QD+++  +llTk+d+f++r e++qll+    + s          ++ pa lkp+  wtgkq++s +l  ++ +     + 
      KOO25306.1 185 QYIVPTNGKPLRGLIQDHIVMGVLLTKRDTFLSRSEVMQLLHLAHMDLSglkrhgrVAPLPVPALLKPQVRWTGKQVISHLLL-HLHPHARhlS- 277
                     6899****************************************666645666667445899******88*************.6666665332. PP

                     SS.......................STSEEECSSEEEES--SHHHHSSSSTTSHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHCEB-TGGGG CS
  RNA_pol_Rpb1_3  87 ek.......................dgkvlikngelikGvidkkvvgkksqgslihvlakeygiketvrfldslqrlgfkyllqsgftigigDt 157
                                              d +v+++ gel++Gv+dk+++g +s+ +l+h++++ +g ++t r+l +l +l++++ ++ gft+gi+D+
      KOO25306.1 278 -MeagtktpasawsaakgrgkpepeDATVIVRRGELLQGVLDKAAFG-ASEFGLVHCVHELLGGEATGRLLTQLGKLFTGFNQMVGFTCGIADL 369
                     .233556677889999999999999**********************.9*******************************************95 PP

  == domain 2  score: -3.2 bits;  conditional E-value: 1.6
                     SEEECSSEEEES--SHHHHSSSSTTSHHHHHHHHCHHHHH CS
  RNA_pol_Rpb1_3  91 kvlikngelikGvidkkvvgkksqgslihvlakeygiket 130
                     + lik+ e ++   d +v  +++ gs+++ +a e g++ t
      KOO25306.1 561 RCLIKHLEPLQVAYDHTVR-STADGSVVQFIAGEDGLDPT 599
                     5678888887655555555.59999999999998887765 PP

>> RNA_pol_Rpb1_4  RNA polymerase Rpb1, domain 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.2   0.0   3.6e-20   1.6e-16      38     108 .]     445     522 ..     424     522 .. 0.82

  Alignments for each domain:
  == domain 1  score: 60.2 bits;  conditional E-value: 3.6e-20
                     HHHHHHCSTT.......TSHHHHHHHCTSSS-HHHHHHHHTB-EEEEBTTBSS--SSTSCSSTTSSSSESSTTTSSEE CS
  RNA_pol_Rpb1_4  38 gkiaskslaa.......sNsiliMvksGaKGsiinisqiagclGqqnvegkripkgfsgrtlphfkkidespesrGFv 108
                     ++++  +l++        N++  M+++GaKG ++n+sqia +lGqq++eg+r+p   sg+t+p+f +++ s+++ G++
      KOO25306.1 445 SEAVAACLPSgqykpfpANQFALMTSTGAKGGPVNFSQIAVMLGQQELEGRRVPLSPSGCTAPCFAPYELSARAGGYI 522
                     444444444235556678**********************************************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1158 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       358  (0.0199677); expected 358.6 (0.02)
Passed bias filter:                      280  (0.0156172); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.70u 0.27s 00:00:00.97 Elapsed: 00:00:00.43
# Mc/sec: 8157.61
//
Query:       KOO25307.1  [L=1078]
Description: traf3-interacting protein 1 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    5.3e-35  120.7   0.3      9e-35  119.9   0.3    1.3  1  MIP-T3_C        Microtubule-binding protein MIP-T3 C-terminal
    2.8e-33  114.3   0.0    4.7e-19   68.4   0.0    2.6  2  MIP-T3          Microtubule-binding protein MIP-T3 CH-like do
  ------ inclusion threshold ------
      0.035   13.8   1.4      0.063   12.9   1.4    1.3  1  Lebercilin      Ciliary protein causing Leber congenital amau
      0.042   14.0   1.3      0.082   13.1   1.3    1.5  1  K-box           K-box region
      0.046   13.6   0.0       0.12   12.2   0.0    1.6  1  DUF3142         Protein of unknown function (DUF3142)
      0.059   13.4   1.5       0.13   12.3   1.5    1.5  1  CENP-F_leu_zip  Leucine-rich repeats of kinetochore protein C
       0.49    9.2   2.3       0.85    8.4   2.3    1.3  1  Spc7            Spc7 kinetochore protein


Domain annotation for each model (and alignments):
>> MIP-T3_C  Microtubule-binding protein MIP-T3 C-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  119.9   0.3   3.5e-38     9e-35       4     153 ..     912    1074 ..     909    1075 .. 0.92

  Alignments for each domain:
  == domain 1  score: 119.9 bits;  conditional E-value: 3.5e-38
    MIP-T3_C    4 dkkGalvqkiletkkelekekaeaeeeekeasla.............essakkeravsaseiekLresiQkltksvnPLgklldfiqdDidsMqrEL 87  
                  +++G+lv+  l++k e+e+++  +  + +  ++              + +a++ +  s+se+++Lr siQ+l++s+nPLg+ l+++q+D+++M +EL
  KOO25307.1  912 QQHGRLVKNLLDAKEEMEAKGDDKVGGGAIEEPDdkgggiilgkkskAGAAAGGKLPSKSEVNALRASIQTLCQSSNPLGRCLEYVQEDLEAMGKEL 1008
                  79****************99999886665555557889999*9998655667788889*************************************** PP

    MIP-T3_C   88 emWrseyrqqaeelaeerrateealeplkaqlaeleeaIkdqkekisnvrakilkNeakiqkllks 153 
                  e+Wr + ++   ela+e+++t++al+ lka+l+ +ee+I++++ +i  ++  il+N+a++++ll++
  KOO25307.1 1009 ESWRAQRHRRVGELADEEATTASALSGLKAELEAVEEKIREKQAQIRFTKGAILRNDAQVERLLSQ 1074
                  ***************************************************************987 PP

>> MIP-T3  Microtubule-binding protein MIP-T3 CH-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   68.4   0.0   1.9e-22   4.7e-19       3      60 ..     611     668 ..     609     672 .. 0.96
   2 !   43.0   0.0   1.4e-14   3.7e-11      57     112 ..     703     758 ..     698     759 .. 0.95

  Alignments for each domain:
  == domain 1  score: 68.4 bits;  conditional E-value: 1.9e-22
                 HHHHHHHHHH---S---TTTTTS--HHHHHHHHHHHHHHT-SSTTTS-HHHH-GGG-- CS
      MIP-T3   3 kktqellgkvikkPkltekLLskPPFkylvDivtevikatGflkglytddeldsenvk 60 
                  +tq++lg++ik+Pklt  LL+kPPF++l+Div+ev+k tGf+ gly++del+s+++k
  KOO25307.1 611 IQTQQTLGELIKRPKLTGALLQKPPFRFLHDIVSEVTKVTGFASGLYQEDELQSAKIK 668
                 58****************************************************9986 PP

  == domain 2  score: 43.0 bits;  conditional E-value: 1.4e-14
                 GG--SHHHHHHHHHHHHHHHHHHH-------HHHHTTT--HHHHHHHHHHHHHHHH CS
      MIP-T3  57 envkdkdakiaFLqklidvvelttkkelkakpakivaGkepektnellqalarvae 112
                  n +dkdak+a+L k+i+ vel  + ++  k +k+vaG+e+e+tn +lq l+++a+
  KOO25307.1 703 PNAQDKDAKTAYLGKIIKCVELSLGISMPLKVGKVVAGLEAENTNMFLQYLHQAAT 758
                 6789************************************************9997 PP

>> Lebercilin  Ciliary protein causing Leber congenital amaurosis disease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   1.4   2.5e-05     0.063      19     104 ..     993    1075 ..     982    1077 .. 0.91

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 2.5e-05
  Lebercilin   19 elaelqskleelrkEnklLkrlqkrqekaLskyedteaeLpqllarhneEvrvlrerlRksqekerelekklkekeaellrlkdkl 104 
                   l+ +q+ le++ kE++  +++ +r   +L    d+ea  ++ l+  ++E++++ e++R++q++ r ++  + + +a+++rl +++
  KOO25307.1  993 CLEYVQEDLEAMGKELESWRAQRHRRVGEL---ADEEATTASALSGLKAELEAVEEKIREKQAQIRFTKGAILRNDAQVERLLSQV 1075
                  57889999**************99999888...89999999***************************************998875 PP

>> K-box  K-box region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   1.3   3.2e-05     0.082       9      71 ..     995    1059 ..     971    1072 .. 0.89

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 3.2e-05
       K-box    9 eelkqEvskLkkeieklqrsqRkllGe..dleslslkeLqqLEqqLekslkkiRsrKeqllleei 71  
                  e+++++++ + ke+e+ +++  +++Ge  d e  +   L  L  +Le+  +kiR++++q+ +++ 
  KOO25307.1  995 EYVQEDLEAMGKELESWRAQRHRRVGElaDEEATTASALSGLKAELEAVEEKIREKQAQIRFTKG 1059
                  6899**********************9656688999***********************977665 PP

>> DUF3142  Protein of unknown function (DUF3142)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   4.6e-05      0.12      60     112 ..     482     534 ..     474     552 .. 0.89

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 4.6e-05
     DUF3142  60 afLraLrsalpaelkLsitaLPaWldspelesllaqvDesvLqvhavsdPrrg 112
                 ++L +L +a++  l L++  L aWl  + l++l a +D    +vh v   r g
  KOO25307.1 482 RYLDRLSRAVAIALGLGLGSLSAWLARTLLPALRAAADACLSRVHLVRRYRYG 534
                 799******************************************99877655 PP

>> CENP-F_leu_zip  Leucine-rich repeats of kinetochore protein Cenp-F/LEK1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   1.5     5e-05      0.13      50     127 ..     969    1050 ..     966    1059 .. 0.77

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 5e-05
  CENP-F_leu_zip   50 skaevetlkeeieelaeelreleldLvalrsekeeLekelqkkq....ervseLeslnsslenlleekEqekvqmkeeskaa 127 
                      sk ev++l++ i++l ++ + l   L+ ++++ e + kel+ ++    +rv eL   + ++ + l+ + +e   ++e+  ++
      KOO25307.1  969 SKSEVNALRASIQTLCQSSNPLGRCLEYVQEDLEAMGKELESWRaqrhRRVGELADEEATTASALSGLKAELEAVEEKIREK 1050
                      799*************************************977633336899999999999999986655533333333322 PP

>> Spc7  Spc7 kinetochore protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.4   2.3   0.00033      0.85     148     238 ..     973    1070 ..     966    1077 .. 0.63

  Alignments for each domain:
  == domain 1  score: 8.4 bits;  conditional E-value: 0.00033
        Spc7  148 legleedkelLekqeeeldellpeleeekaeleeeleklqe.......aaeelesidkeeLeelreelaelkaeieekkkelaelqeqleeleekie 237 
                  +++l++  ++L ++ + l + l+ ++e  +++ +ele+ ++       + ++ e+ +   L  l+ el++++++i+ek++++   +  + + ++++e
  KOO25307.1  973 VNALRASIQTLCQSSNPLGRCLEYVQEDLEAMGKELESWRAqrhrrvgELADEEATTASALSGLKAELEAVEEKIREKQAQIRFTKGAILRNDAQVE 1069
                  5556666666666666666677777777777777777666654443332233355677788888888888888888888887766666666666555 PP

        Spc7  238 e 238 
                   
  KOO25307.1 1070 R 1070
                  5 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1078 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1020  (0.0568911); expected 358.6 (0.02)
Passed bias filter:                      584  (0.0325729); expected 358.6 (0.02)
Passed Vit filter:                        91  (0.00507558); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.83u 0.32s 00:00:01.14 Elapsed: 00:00:00.44
# Mc/sec: 7437.01
//
Query:       KOO25308.1  [L=226]
Description: transcription factor oxj2 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      1e-20   73.9   0.2    2.3e-20   72.8   0.2    1.6  1  HMG_box    HMG (high mobility group) box
    8.4e-11   42.3   0.1    1.6e-10   41.4   0.1    1.5  1  HMG_box_2  HMG-box domain
  ------ inclusion threshold ------
        0.1   12.1   0.2       0.15   11.6   0.2    1.2  1  MMTV_SAg   Mouse mammary tumour virus superantigen


Domain annotation for each model (and alignments):
>> HMG_box  HMG (high mobility group) box
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   72.8   0.2   3.8e-24   2.3e-20       1      67 [.      58     124 ..      58     126 .. 0.98

  Alignments for each domain:
  == domain 1  score: 72.8 bits;  conditional E-value: 3.8e-24
                 --SS--HHHHHHHHHHHHHHHHSTTS-HHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHH CS
     HMG_box   1 pkRplsafflfskeqraklkaenPelknaeiskklgekWkalseeeKkkYeekaekekaryekekpe 67 
                 pkRp++af+lfs+e+r +l+  nP+++na++s+ lg+ W++++++eK  Y  +a++ k+++ +++pe
  KOO25308.1  58 PKRPMNAFILFSNEKRSELADRNPQMSNAAVSVLLGQCWRDMPAHEKSSYVIAARRIKEEFAAAYPE 124
                 8***************************************************************997 PP

>> HMG_box_2  HMG-box domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.4   0.1   2.7e-14   1.6e-10       4      67 ..      58     120 ..      55     125 .. 0.95

  Alignments for each domain:
  == domain 1  score: 41.4 bits;  conditional E-value: 2.7e-14
                 .-SS--HHHHHHHTTHHHHHHHT---SSHHHHTGGGHHHHHHS-HHHHHHHHHHHHHHHHHHHH CS
   HMG_box_2   4 pkaarnAYalfvqemipelkrkGnpviglaevsklcsekWkalseeeKekYeekAkedkkrydr 67 
                 pk+++nA++lf  e++ el  + np +  a vs l+++ W+ ++++eK+ Y   A+ +k+++ +
  KOO25308.1  58 PKRPMNAFILFSNEKRSELADR-NPQMSNAAVSVLLGQCWRDMPAHEKSSYVIAARRIKEEFAA 120
                 9*********************.*************************************9965 PP

>> MMTV_SAg  Mouse mammary tumour virus superantigen
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.2   2.5e-05      0.15       3      76 ..     147     221 ..     145     225 .. 0.89

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 2.5e-05
    MMTV_SAg   3 lalltlkllaevadsknsssvedqiLnasenkelllrsdPqtlesvePlkfctsele.lvtqlrneslsikdlll 76 
                 la++ l++la v +  n+ s+ +q  +  e++e+  +s  +     eP +  +s l+ l t   ne  +  ++l 
  KOO25308.1 147 LAPPSLHALALVGSRLNQQSTYSQPEEEHEESEYSYHSHQSQQARGEPERSSPSLLDqLCTVAENEHTAAAQMLS 221
                 89**********************************99999999************9667788888877776665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (226 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       605  (0.0337442); expected 358.6 (0.02)
Passed bias filter:                      323  (0.0180155); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.40u 0.28s 00:00:00.68 Elapsed: 00:00:00.42
# Mc/sec: 1631.14
//
Query:       KOO25309.1  [L=220]
Description: hypothetical protein Ctob_010520 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.7e-10   41.2   3.3    5.3e-06   26.8   0.3    2.0  3  EF-hand_7  EF-hand domain pair
    2.5e-07   30.1   0.5     0.0083   16.0   0.1    2.5  2  EF-hand_6  EF-hand domain
    1.1e-06   27.7   2.5     0.0099   15.4   0.2    2.4  2  EF-hand_1  EF hand
    3.3e-05   23.2   5.9      0.038   13.5   0.4    2.4  2  EF-hand_5  EF hand
  ------ inclusion threshold ------
       0.04   13.8   0.9        4.4    7.2   0.1    2.3  2  EF-hand_8  EF-hand domain pair


Domain annotation for each model (and alignments):
>> EF-hand_7  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.0   2.9e-06      0.01      42      69 ..      96     123 ..      81     125 .. 0.80
   2 !   26.8   0.3   1.5e-09   5.3e-06       2      68 ..      98     164 ..      97     167 .. 0.86
   3 !   10.9   0.0   0.00013      0.48      10      30 ..     148     169 ..     139     202 .. 0.70

  Alignments for each domain:
  == domain 1  score: 16.3 bits;  conditional E-value: 2.9e-06
   EF-hand_7  42 sdeelellfkefDtdkdGvisfdEFlkl 69 
                  +e+l +lf ++D ++dG + +d+F+ +
  KOO25309.1  96 AKEQLGALFGMMDANGDGFLRLDDFEII 123
                 56889999****************9866 PP

  == domain 2  score: 26.8 bits;  conditional E-value: 1.5e-09
   EF-hand_7   2 eklkeaFkelDtdgdgyldkeellrllrkifqgagegsklsdee.......lellfkefDtdkdGvisfdEFlk 68 
                 e+l   F ++D +gdg+l+ ++++ ++       ++ s ls+ +         +l +e+D ++dG+i  dEF +
  KOO25309.1  98 EQLGALFGMMDANGDGFLRLDDFE-IIA------SRSSTLSQAAktkalmyFTKLQEELDFNSDGKIEPDEFIR 164
                 788899******************.888......8888888755566777788999999*************85 PP

  == domain 3  score: 10.9 bits;  conditional E-value: 0.00013
   EF-hand_7  10 elDtdgdgyldkeellr.llrk 30 
                 elD + dg+++++e+ r ++++
  KOO25309.1 148 ELDFNSDGKIEPDEFIRgIIKI 169
                 6999999999999955423333 PP

>> EF-hand_6  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.1   2.3e-06    0.0083       3      25 ..     101     123 ..      99     131 .. 0.87
   2 !   11.9   0.0   4.6e-05      0.17       8      26 ..     148     166 ..     147     173 .. 0.87

  Alignments for each domain:
  == domain 1  score: 16.0 bits;  conditional E-value: 2.3e-06
   EF-hand_6   3 reaFklfDkdgdGkidaeElrka 25 
                  ++F ++D +gdG++  +++  +
  KOO25309.1 101 GALFGMMDANGDGFLRLDDFEII 123
                 579*****************876 PP

  == domain 2  score: 11.9 bits;  conditional E-value: 4.6e-05
   EF-hand_6   8 lfDkdgdGkidaeElrkal 26 
                 ++D++ dGki ++E+++ +
  KOO25309.1 148 ELDFNSDGKIEPDEFIRGI 166
                 68*************9855 PP

>> EF-hand_1  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.1   0.2     3e-05      0.11       4      23 ..     102     121 ..      99     126 .. 0.86
   2 !   15.4   0.2   2.7e-06    0.0099       8      27 ..     148     167 ..     147     169 .. 0.88

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 3e-05
                 HHHHHHTTTSSSEEEHHHHH CS
   EF-hand_1   4 eiFrefDkDgdGkIdfeEfk 23 
                  +F ++D +gdG++ +++f 
  KOO25309.1 102 ALFGMMDANGDGFLRLDDFE 121
                 6799**********999996 PP

  == domain 2  score: 15.4 bits;  conditional E-value: 2.7e-06
                 HHTTTSSSEEEHHHHHHHHH CS
   EF-hand_1   8 efDkDgdGkIdfeEfkellk 27 
                 e+D + dGkI+ +Ef++ + 
  KOO25309.1 148 ELDFNSDGKIEPDEFIRGII 167
                 89*************99775 PP

>> EF-hand_5  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.1   0.8     3e-05      0.11       1      16 [.     100     115 ..     100     121 .. 0.88
   2 !   13.5   0.4   1.1e-05     0.038       7      23 ..     148     164 ..     147     167 .. 0.88

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 3e-05
                 HHHHHHHH-SS-SSCE CS
   EF-hand_5   1 lkdtFqaiDlNgDGkI 16 
                 l ++F ++D+NgDG++
  KOO25309.1 100 LGALFGMMDANGDGFL 115
                 5689**********86 PP

  == domain 2  score: 13.5 bits;  conditional E-value: 1.1e-05
                 HH-SS-SSCE-HHHHHH CS
   EF-hand_5   7 aiDlNgDGkIskeELkt 23 
                 ++D N DGkI ++E+ +
  KOO25309.1 148 ELDFNSDGKIEPDEFIR 164
                 689************65 PP

>> EF-hand_8  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.2   0.1    0.0012       4.4      24      48 ..      96     120 ..      84     120 .. 0.80
   2 ?    5.0   0.1    0.0061        22      34      49 ..     148     163 ..     147     168 .. 0.81

  Alignments for each domain:
  == domain 1  score: 7.2 bits;  conditional E-value: 0.0012
   EF-hand_8  24 seeevdilfrefDtdgdGkisfeEF 48 
                  +e++ +lf  +D +gdG + +++F
  KOO25309.1  96 AKEQLGALFGMMDANGDGFLRLDDF 120
                 5677889999*************99 PP

  == domain 2  score: 5.0 bits;  conditional E-value: 0.0061
   EF-hand_8  34 efDtdgdGkisfeEFc 49 
                 e+D++ dGki  +EF+
  KOO25309.1 148 ELDFNSDGKIEPDEFI 163
                 6788889999888886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (220 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       375  (0.0209158); expected 358.6 (0.02)
Passed bias filter:                      293  (0.0163422); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.43u 0.24s 00:00:00.67 Elapsed: 00:00:00.39
# Mc/sec: 1678.82
//
Query:       KOO25310.1  [L=175]
Description: plasma membrane calcium ATPase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    6.2e-18   65.1   2.0    8.5e-18   64.7   2.0    1.2  1  Cation_ATPase_C  Cation transporting ATPase, C-terminus


Domain annotation for each model (and alignments):
>> Cation_ATPase_C  Cation transporting ATPase, C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.7   2.0   4.7e-22   8.5e-18      89     180 ..       6      95 ..       2      97 .. 0.95

  Alignments for each domain:
  == domain 1  score: 64.7 bits;  conditional E-value: 4.7e-22
  Cation_ATPase_C  89 yaqtmaFitlvlsqifnalnlrsrreslfkfsglfsnkllllaillslllqvlivyvpglnavfgtaplsleewlialllalvvllvdelvK 180
                      ++ t++F++lv++ +fn ln+r+++ +++++sg+++n+ +++++l+s+++q+++v+v  +  +f+t+pl++ +w ++++l+++ +++   + 
       KOO25310.1   6 VHYTLMFNALVMMTLFNELNSRKLNGEINVLSGITKNPTFIGVLLFSFAVQAIVVQV--GSLAFKTEPLDGPQWGVCIALGFLGMVWQLGIN 95 
                      578******************************************************..999************************987665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (175 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       476  (0.0265492); expected 358.6 (0.02)
Passed bias filter:                      332  (0.0185175); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.22s 00:00:00.60 Elapsed: 00:00:00.36
# Mc/sec: 1439.87
//
Query:       KOO25311.1  [L=354]
Description: tubulin-tyrosine ligase family protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00043   20.0   0.1    0.00097   18.9   0.1    1.6  1  EF-hand_6  EF-hand domain
    0.00077   18.8   0.1     0.0016   17.8   0.1    1.6  1  EF-hand_1  EF hand
  ------ inclusion threshold ------
       0.03   14.4   0.1      0.052   13.6   0.1    1.3  1  Med7       MED7 protein
      0.031   14.7   0.1      0.077   13.5   0.1    1.6  1  EF-hand_7  EF-hand domain pair
       0.25    9.5   3.6       0.35    9.0   3.6    1.1  1  Nop14      Nop14-like family


Domain annotation for each model (and alignments):
>> EF-hand_6  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.9   0.1   2.7e-07   0.00097       2      27 ..     128     153 ..     127     163 .. 0.92

  Alignments for each domain:
  == domain 1  score: 18.9 bits;  conditional E-value: 2.7e-07
   EF-hand_6   2 lreaFklfDkdgdGkidaeElrkalr 27 
                 +++aF+ fD+d++G  d++ lr+al 
  KOO25311.1 128 IQDAFNTFDRDRSGLMDIQALRDALE 153
                 799*********************98 PP

>> EF-hand_1  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.8   0.1   4.6e-07    0.0016       2      27 ..     128     153 ..     127     155 .. 0.93

  Alignments for each domain:
  == domain 1  score: 17.8 bits;  conditional E-value: 4.6e-07
                 HHHHHHHHTTTSSSEEEHHHHHHHHH CS
   EF-hand_1   2 lkeiFrefDkDgdGkIdfeEfkellk 27 
                 ++++F+ fD+D++G +d++ ++++l+
  KOO25311.1 128 IQDAFNTFDRDRSGLMDIQALRDALE 153
                 789*******************9997 PP

>> Med7  MED7 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.1   1.4e-05     0.052       7      75 ..      77     140 ..      76     166 .. 0.77

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 1.4e-05
        Med7   7 PPpfyklfteenlkklkelkeeaekeeeeeedesaaeeqelelpkeLrvlipPeppkegeYrvFGenws 75 
                 PP+  k +tee+l++l+e ++++ +ee+++e+e+    +e+ l ++ +  ipP+++  + +++F++  s
  KOO25311.1  77 PPKPKKVYTEEELQRLEEERQARLQEEKAAEEERV---KEEGLVNQWQASIPPNIQ--DAFNTFDRDRS 140
                 99999**********88877777766666555553...444556778889999999..88999988766 PP

>> EF-hand_7  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.1   2.1e-05     0.077       4      30 ..     128     154 ..     126     175 .. 0.85

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 2.1e-05
   EF-hand_7   4 lkeaFkelDtdgdgyldkeellrllrk 30 
                 +++aF+ +D+d++g +d + l+++l++
  KOO25311.1 128 IQDAFNTFDRDRSGLMDIQALRDALER 154
                 899*******************99985 PP

>> Nop14  Nop14-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.0   3.6   9.7e-05      0.35     280     341 ..      86     175 ..      82     200 .. 0.66

  Alignments for each domain:
  == domain 1  score: 9.0 bits;  conditional E-value: 9.7e-05
       Nop14 280 kerLeklEeeRlkRMrgeedeeeeeekkkkkkke...........................asaDdldddfvleeee.eeeefglgkglk 341
                 +e+L++lEeeR++R + e+ +eee  k+++  ++                           a  D l+   ++eee+ +++ fgl+  +k
  KOO25311.1  86 EEELQRLEEERQARLQEEKAAEEERVKEEGLVNQwqasippniqdafntfdrdrsglmdiqALRDALERRGWVEEEDaDSTSFGLKWTIK 175
                 689*************99555555555554444467778888888888888877788777766777777766665441344556665554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (354 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1197  (0.0667633); expected 358.6 (0.02)
Passed bias filter:                      558  (0.0311228); expected 358.6 (0.02)
Passed Vit filter:                        53  (0.0029561); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.50u 0.22s 00:00:00.72 Elapsed: 00:00:00.39
# Mc/sec: 2718.43
//
Query:       KOO25312.1  [L=828]
Description: hypothetical protein Ctob_008951 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
  ------ inclusion threshold ------
       0.52   10.1   9.4       0.92    9.3   9.4    1.3  1  Draxin       Draxin
        1.4    7.6   8.5        2.1    7.0   8.5    1.1  1  HAUS5        HAUS augmin-like complex subunit 5
          3    7.9   7.0       0.34   10.9   0.2    2.7  4  DNMT1-RFD    Cytosine specific DNA methyltransferase replicat


Domain annotation for each model (and alignments):
>> Draxin  Draxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3   9.4   0.00015      0.92      58     182 ..     137     272 ..     111     285 .. 0.64

  Alignments for each domain:
  == domain 1  score: 9.3 bits;  conditional E-value: 0.00015
      Draxin  58 lspvrlemgppaalkerkevflgvklsyqerenkspgselkrkgrkhg...........rehkkksrrdkvrkkkgkalepepssllkdreafedqlqk 145
                 +s+ r    ++aal   +++ +++++  qer +k ++ e+kr +++++           re+k+  r dk  k+ gk+ + + ++++k + a  ++  k
  KOO25312.1 137 RSSGRKRAPSAAALAAAASKEAEAEARGQERLEKAKEREVKREVKREDkevksedkevkREDKQVKREDKEVKRAGKTGDGAKAAVTKAKGAAVKAGAK 235
                 444444444445666666666666666666666666666666666666555555555558888888888888888888777777777766666655555 PP

      Draxin 146 asleeassplapvllalt.alvatviteepptlppast 182
                 +s +++ s+ ++v+ a+t +  +++++ ++p++p++ +
  KOO25312.1 236 SS-ADVDSSDEEVVAAATaSSATAAASSAAPAVPSPPS 272
                 55.67888888888888755556666666666665433 PP

>> HAUS5  HAUS augmin-like complex subunit 5
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.0   8.5   0.00035       2.1      70     125 ..     155     209 ..     123     218 .. 0.64

  Alignments for each domain:
  == domain 1  score: 7.0 bits;  conditional E-value: 0.00035
       HAUS5  70 skaeeresaaaereelekeverLraeirrldkeleareeelsreeaevkraldeis 125
                 sk++e e+  +er e +ke  + + e++r dke+++ ++e++re+++vkr  +e++
  KOO25312.1 155 SKEAEAEARGQERLEKAKE-REVKREVKREDKEVKSEDKEVKREDKQVKREDKEVK 209
                 3444444444444443333.235666777777777777777777777766655544 PP

>> DNMT1-RFD  Cytosine specific DNA methyltransferase replication foci domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -5.3   1.8         3   1.8e+04      45      60 ..     185     199 ..     169     209 .. 0.44
   2 ?   -1.9   0.0      0.54   3.2e+03      83     103 ..     292     312 ..     289     314 .. 0.83
   3 ?   10.9   0.2   5.7e-05      0.34      83     108 ..     391     416 ..     384     418 .. 0.90
   4 ?   -1.3   0.0      0.34   2.1e+03      67      94 ..     529     560 ..     519     562 .. 0.79

  Alignments for each domain:
  == domain 1  score: -5.3 bits;  conditional E-value: 3
                 T.----SSTT.SEEEE CS
   DNMT1-RFD  45 dsedeekkkekgiedk 60 
                 + e+++++ke + edk
  KOO25312.1 185 K-EVKSEDKEVKREDK 199
                 2.22233332222222 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 0.54
                 EEEEEEESS-EEEE-SB-TTT CS
   DNMT1-RFD  83 alivlsTetadYkLlkPsaeY 103
                 a+++++++ +++ LlkP+  +
  KOO25312.1 292 AVASVRSAASWFVLLKPRLDF 312
                 67789999*********8665 PP

  == domain 3  score: 10.9 bits;  conditional E-value: 5.7e-05
                 EEEEEEESS-EEEE-SB-TTTHHHHH CS
   DNMT1-RFD  83 alivlsTetadYkLlkPsaeYapiye 108
                 + +++ T+ a Y+L +P+++Y p+y+
  KOO25312.1 391 PALWVQTASALYRLTQPAEAYLPLYK 416
                 679*********************97 PP

  == domain 4  score: -1.3 bits;  conditional E-value: 0.34
                 S-ECEEEEEECS....SSSBEEEEEEESS-EE CS
   DNMT1-RFD  67 gpIkeWtisgvd....egekalivlsTetadY 94 
                 gpI +W+++++     ++  + ++l T+t  Y
  KOO25312.1 529 GPIRAWSTDLDRrgtdGKLLPGLWLCTKTVAY 560
                 89******776654446667899999998877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (828 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1901  (0.106029); expected 358.6 (0.02)
Passed bias filter:                      708  (0.0394891); expected 358.6 (0.02)
Passed Vit filter:                       129  (0.00719505); expected 17.9 (0.001)
Passed Fwd filter:                        17  (0.000948185); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.97u 0.27s 00:00:01.24 Elapsed: 00:00:00.44
# Mc/sec: 5613.24
//
Query:       KOO25313.1  [L=290]
Description: hypothetical protein Ctob_008952 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.046   13.6   0.3       0.13   12.2   0.3    1.8  1  zf-C3HC4_3  Zinc finger, C3HC4 type (RING finger)
      0.055   13.8   0.7       0.12   12.7   0.7    1.6  1  zf-RING_2   Ring finger domain


Domain annotation for each model (and alignments):
>> zf-C3HC4_3  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.3   1.4e-05      0.13      17      47 ..     237     272 ..     216     274 .. 0.83

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 1.4e-05
                 ETTEEEEEE-HHHHHHHHH......TT-B-TTT--B- CS
  zf-C3HC4_3  17 llpCgHlvlCeeCaekllk......rkkkCpiCrrpi 47 
                 + pC+H+ + ee a ++ +        ++Cp+Cr+p+
  KOO25313.1 237 IHPCMHW-IGEEGAHRISAdslrtrTGATCPLCRAPV 272
                 4489999.9999999998899999999*******997 PP

>> zf-RING_2  Ring finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.7   1.3e-05      0.12       3      44 .]     218     269 ..     216     269 .. 0.61

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 1.3e-05
   zf-RING_2   3 CpICleelssads....vlllpCgHvfhreClerw....lrssst......CPlCr 44 
                 Cp+  e + + d+    +++ pC H +++e + r+    l    +      CPlCr
  KOO25313.1 218 CPVSRETFLEMDRsttfYHIHPCMHWIGEEGAHRIsadsL----RtrtgatCPLCR 269
                 5555555533333222233669*********988754442....2344567****9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (290 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       382  (0.0213063); expected 358.6 (0.02)
Passed bias filter:                      313  (0.0174578); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.44u 0.23s 00:00:00.67 Elapsed: 00:00:00.41
# Mc/sec: 2113.18
//
Query:       KOO25314.1  [L=616]
Description: domain containing protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.1e-39  136.6   0.0    1.8e-39  135.9   0.0    1.3  1  RhoGEF     RhoGEF domain
    1.3e-11   44.4   0.5    7.2e-05   22.8   0.0    2.5  2  WW         WW domain
    2.1e-11   44.2   0.0    2.4e-09   37.6   0.0    2.7  2  PH         PH domain
  ------ inclusion threshold ------
      0.018   15.3   0.0      0.071   13.4   0.0    2.0  2  PH_6       Pleckstrin homology domain
      0.026   14.3   3.0       0.36   10.6   0.2    3.1  2  PH_13      Pleckstrin homology domain
      0.076   12.9   1.3        2.9    7.7   0.0    2.9  3  PmbA_TldD  Putative modulator of DNA gyrase


Domain annotation for each model (and alignments):
>> RhoGEF  RhoGEF domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  135.9   0.0   5.9e-43   1.8e-39       2     182 .]     132     318 ..     131     318 .. 0.89

  Alignments for each domain:
  == domain 1  score: 135.9 bits;  conditional E-value: 5.9e-43
                 HHHHHHHHHHHHHHHHHHHHHTHCCCHHCT......CCHHHHHHHHCTTHHHHHHHHHHHHHHHHHHHH.HHHTTSS-S-SHHHHHHHHSTHHH.HHHH CS
      RhoGEF   2 ikElleTErsYvrdLkvlvevylkplsele......vlseeeikiiFsnieeilelhrsflleeLeerlkeseeqkeaqsigdvflkfadkfkk.YseY 93 
                 +kE+++TE+sYv +L+ l +vy++pl++ +      ++++++++ iF ni  i++++ + +l+eL e     +++  +++ + +++k a kfk  Y+ Y
  KOO25314.1 132 LKEIVSTEQSYVDSLRALNKVYVDPLRMVAdvpkgaIFTHNDLDAIFLNITVIIKVN-EAFLSELLEEE---KKW-PNVNYAPILKKAATKFKGcYTRY 225
                 79************************9877***************************.66766565544...344.48999************67**** PP

                 HHCHHHHHHHHHH.....HHHHHHHHHHHHHHHHTSGGGTT--HHHHTTHHHHHHHHHHHHHHHHHHTS-TTSHHHHHHHHHHHHHHHHHHHHH CS
      RhoGEF  94 csnypnalkllke.....lskknkkfkafleeaeerpecskldLeslLikPvqRlprYpLLLkellkntpeshpdyealkkaleaikevaseiN 182
                 ++n+++a   l +     + + ++k++ ++ +  ++p ++++dL+s+Li+PvqR+prY +LL+ellk+t+e+h ++ ++++ale++ ++a+++N
  KOO25314.1 226 VNNFDDAAGKLLTigtsdKPADKDKLRYLVGS-ARHPDAKGRDLRSFLIQPVQRVPRYRMLLDELLKHTDEDHVERADIQEALEMVITLAKSFN 318
                 *******9999998999855566667555555.568888**************************************************99988 PP

>> WW  WW domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.4   0.1   2.7e-07   0.00081      16      31 .]      20      35 ..      15      35 .. 0.96
   2 !   22.8   0.0   2.4e-08   7.2e-05       4      31 .]      60      87 ..      58      87 .. 0.95

  Alignments for each domain:
  == domain 1  score: 19.4 bits;  conditional E-value: 2.7e-07
                EEEEETTT--EESS-- CS
          WW 16 vYYyNheTgetqWekP 31
                +YY N +Tge+qW++P
  KOO25314.1 20 HYYANLTTGESQWDRP 35
                6**************9 PP

  == domain 2  score: 22.8 bits;  conditional E-value: 2.4e-08
                TEEEEE-TTTT-EEEEETTT--EESS-- CS
          WW  4 GWeeqwdpdsGrvYYyNheTgetqWekP 31
                 W+e  d+ +Gr+Y yN eTge+ W+ P
  KOO25314.1 60 KWVEFMDEHHGRPYLYNNETGESAWVLP 87
                5************************988 PP

>> PH  PH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.6   0.0   8.1e-13   2.4e-09       2     104 ..     357     452 ..     356     453 .. 0.90
   2 ?    3.8   0.0     0.028        83       7     101 ..     491     592 ..     471     596 .. 0.71

  Alignments for each domain:
  == domain 1  score: 37.6 bits;  conditional E-value: 8.1e-13
                 EEEEEEEEETSSSSCSEEEEEEEEETTEEEEESSTTCTTESSEEEEEESTTEEEEEEECTTSSSSTSEEEEEESTSSSTEEEEEEESSHHHHHHHHHHH CS
          PH   2 vkeGwLlkkgsgkkkswkkrwfvLkdsellyykndksekdkepkgsislsncevvevvatedpkrkfcfelriverngsrtyllqasseeerkeWikai 100
                 vkeG L+k++  +    ++r ++L+++ lly ++    k +++kg+i l + + ve   +++++ ++ f+l+ +  +g + y+  a+s+ e+ eW +ai
  KOO25314.1 357 VKEGSLVKQRLSH---RQRRQLFLFSDILLYAEAGMAGKGFKLKGKIQLLDGTRVESL-PSTEDSPHAFALVEN--GG-KGYTWLAESAAEKDEWFQAI 448
                 7999999999885...599******8888888888********************996.77**********555..88.******************** PP

                 HHHH CS
          PH 101 qsai 104
                   ai
  KOO25314.1 449 DGAI 452
                 8887 PP

  == domain 2  score: 3.8 bits;  conditional E-value: 0.028
                 EEEETSSSSCSEEEEEEEEETTE.....EEEESSTTCTTESSEEEEEESTTEEEEEEEC..........TTSSSSTSEEEEEESTSSSTEEEEEEESSH CS
          PH   7 LlkkgsgkkkswkkrwfvLkdse.....llyykndksekdkepkgsislsncevvevva..........tedpkrkfcfelriverngsrtyllqasse 90 
                 L+k+ + ++ +   rw++++ ++     l+ + +    +  + k +  l++++   ++a           +  +   cf+l+++    +rt+ ++a++ 
  KOO25314.1 491 LIKYNNSDG-KSTPRWVCVTLDKfgaaeLIRWGDT---RTQDCKSEKRLTEATALLHGAksstffkqkgVKADQDWQCFSLVFK----DRTLDFAAATV 581
                 556666666.5555777777666666667777777...5555555555666666555556666667877777888889999999....79999999999 PP

                 HHHHHHHHHHH CS
          PH  91 eerkeWikaiq 101
                   + +W+ a+ 
  KOO25314.1 582 GLLLDWYLALG 592
                 99999998875 PP

>> PH_6  Pleckstrin homology domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.0   2.4e-05     0.071      62     109 ..     395     448 ..     379     451 .. 0.74
   2 ?   -2.4   0.0       1.9   5.7e+03      34      64 ..     475     504 ..     458     512 .. 0.69

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 2.4e-05
        PH_6  62 spsgvinLadaseva.....adgeqkFhlta.kGkkhtFkasstaeRdnWvaql 109
                   +g i+L d + v+     +d ++ F l+  +Gk  t+ a s+ae+d+W +++
  KOO25314.1 395 KLKGKIQLLDGTRVEslpstEDSPHAFALVEnGGKGYTWLAESAAEKDEWFQAI 448
                 45678888888776422222799******99688889*************9988 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 1.9
        PH_6  34 aedaheviawAsetGkGLLffskkedkasps 64 
                 ++  he ia   + G  L+ +++++ k++p 
  KOO25314.1 475 SKRLHERIAV-LQGGSTLIKYNNSDGKSTPR 504
                 3445666664.57899999999999999886 PP

>> PH_13  Pleckstrin homology domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.1       1.2   3.5e+03     106     140 ..     112     146 ..      94     154 .. 0.67
   2 ?   10.6   0.2   0.00012      0.36      21     134 ..     353     453 ..     345     461 .. 0.74

  Alignments for each domain:
  == domain 1  score: -2.3 bits;  conditional E-value: 1.2
                 EESSEEEEEEESSHHHHHHHHHHHHHHHHHHHHHH CS
       PH_13 106 sdidkvitlkaesanersaWvkkikeAsekyiete 140
                 s+++k++    + a  r + +k+i +  ++y++  
  KOO25314.1 112 SEVEKALAKTEKRAAHRLKLLKEIVSTEQSYVDSL 146
                 45555555555666777888888888888888765 PP

  == domain 2  score: 10.6 bits;  conditional E-value: 0.00012
                 B--EEEEEEEEETT.T--E.EEEEEESSEEEEEEEE----.-------S-SS--EEEEE-SS-EETTSEEEE--SSS-.----EEEEEESSEEEEEEES CS
       PH_13  21 pRkllhsGklyKak.snKE.lvgFLfNDFlLltqpvkklsvssaqeklfesksnaqfklYkkpiflnevlvkkpsdksdssekvlklsdidkvitlkae 117
                 +Rk++  G+l K++ s++   + FLf D lL+++    ++   +  k         fkl  k  +l+   v++   ++ds +    +++  k +t  ae
  KOO25314.1 353 ERKFVKEGSLVKQRlSHRQrRQLFLFSDILLYAEAG--MA---G--K--------GFKLKGKIQLLDGTRVESLPSTEDSPHAFALVENGGKGYTWLAE 436
                 599999999999885554415679999999998874..22...2..2........344444555788888888666665666666778999999999** PP

                 SHHHHHHHHHHHHHHHH CS
       PH_13 118 sanersaWvkkikeAse 134
                 sa e+++W + i+ A +
  KOO25314.1 437 SAAEKDEWFQAIDGAIR 453
                 ********999998876 PP

>> PmbA_TldD  Putative modulator of DNA gyrase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.3   0.0      0.17     5e+02     137     186 ..      50     129 ..      26     145 .. 0.56
   2 ?    1.6   0.1     0.067     2e+02      52      92 ..     296     354 ..     287     391 .. 0.65
   3 ?    7.7   0.0   0.00096       2.9      20     130 ..     407     499 ..     400     600 .. 0.55

  Alignments for each domain:
  == domain 1  score: 0.3 bits;  conditional E-value: 0.17
                 EEEEEEEEEEEE...STCS......ETEEEEEEEE......................SSHHHS..SSHHHHHHHHHHCTT CS
   PmbA_TldD 137 rtrvslslsvia.d.dggs......gdgmgggsgy......................edleeedleeiaeeaaekalasl 186
                 +t++++s+ +++ +  ++        ++  g s++                      +++++ ++e++++++ ++a  +l
  KOO25314.1  50 KTTCQVSVVAKWvEfMDEHhgrpylYNNETGESAWvlpadededkpqceeeapcvkvDEVARSEVEKALAKTEKRAAHRL 129
                 66676666666655432224556653323333444577766655555554444433333333445555555555555544 PP

  == domain 2  score: 1.6 bits;  conditional E-value: 0.067
                 S....HHHHHHHHHHHHHHCCS---TT-..............GGS-HHHHHHHHHHHHH CS
   PmbA_TldD  52 d....ealeeaveraveiaklapedpea..............eevsaeekielleelek 92 
                 d    ++++ea+e  + +ak+ +ed+ a               + +a + ++ l+++e+
  KOO25314.1 296 DhverADIQEALEMVITLAKSFNEDKRAvedhailkevfemfCDKDARDLKAELNSFER 354
                 1344479************9988888878777777555544433333333333444443 PP

  == domain 3  score: 7.7 bits;  conditional E-value: 0.00096
                 EEEEEEEEEEEEEEEEEEETTEEEE...EE...ESS......HHHHHHHHHHHHHHCCS---TT-GGS-HHHHHHHHHHHHHH.CHCSTTEEEEEEEEE CS
   PmbA_TldD  20 evetnsssedsglgvrvikggrlgf...astldtsd......ealeeaveraveiaklapedpeaeevsaeekielleelekalrsadpkienskgari 109
                 +ve++ s+eds  ++ ++ +g  g+   a +    +      +a++ a+++  ++a l           a+++ +l++ ++              ++r+
  KOO25314.1 407 RVESLPSTEDSPHAFALVENGGKGYtwlAESA---AekdewfQAIDGAIRAVRKAADLD----------ASDASDLISMVK--------------SKRL 478
                 66676677777666777889999996653333...123346668888888777777433..........333333322222..............2233 PP

                 E......EEE.EEEEEEETTS CS
   PmbA_TldD 110 sgvsaslsaskeeklianSeG 130
                   + a l++  + + + nS+G
  KOO25314.1 479 HERIAVLQGGSTLIKYNNSDG 499
                 333333344433344444443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (616 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       760  (0.0423894); expected 358.6 (0.02)
Passed bias filter:                      560  (0.0312343); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.64u 0.25s 00:00:00.89 Elapsed: 00:00:00.42
# Mc/sec: 4434.25
//
Query:       KOO25315.1  [L=410]
Description: tubulintyrosine ligase family [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    9.4e-60  202.2   0.0    1.2e-59  201.8   0.0    1.1  1  TTL             Tubulin-tyrosine ligase family
      7e-08   32.0   0.0    2.4e-05   23.7   0.0    2.4  2  ATPgrasp_YheCD  YheC/D like ATP-grasp
  ------ inclusion threshold ------
      0.082   12.1   0.0       0.37   10.0   0.0    1.8  2  ATPgrasp_ST     Sugar-transfer associated ATP-grasp


Domain annotation for each model (and alignments):
>> TTL  Tubulin-tyrosine ligase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  201.8   0.0   2.1e-63   1.2e-59      67     288 ..     105     320 ..      77     327 .. 0.88

  Alignments for each domain:
  == domain 1  score: 201.8 bits;  conditional E-value: 2.1e-63
                 B----SS---XX------BSSTHHHHHHHH..SSS-EEEEB--SSB--BTTEEEEEEEEEEE-..TT-XXXXXXXXXXXXXXXXXX..XXXXXXXXXXX CS
         TTL  67 ntwIvKpsasarGkgirvfnkledikkivsqsqkeplvvqkYierPLLidgrKFDlRlyvlvtsvnpLrvYvYkegllRfasvkYspsvsdlddlevHL 165
                 ++wI+K  + +rG+gi++ ++l  i++      + ++++q+Y++rPLLi++rKFD+R++vlvts+npL v+ Y+  +lRf+s++Y+   +dl d+ +HL
  KOO25315.1 105 SAWILKAMNMSRGRGITIESELGAILE-RLFEREHKMIAQRYVDRPLLIERRKFDMRQWVLVTSINPLVVWRYSHYYLRFSSREYN---DDLADRVTHL 199
                 79************************6.666788899*************************************************...********** PP

                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX....XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
         TTL 166 TNysiqkkskslneesnekkgkkwslqelekyleevrkeeiweeiesiiiktilaae...veasrlnvqrlkncfelyGvDilidenlkpwLlEvNasP 261
                 TN siqkk   ++ +  +++g++ws +++ + l    + e  +++  ++   + a     ++a+ ++++++ ++felyG+D+++d ++ +wLlEvN+sP
  KOO25315.1 200 TNQSIQKK---CEGYGTAIEGNMWSREQFHSFLTAQHGPEAGARTAAAVEARMSAVVgdtMRAVCDVIEPRAASFELYGFDLMLDAQYGVWLLEVNSSP 295
                 ********...99999***************99996666666666555555555444446*************************************** PP

                 ..XXXXXXXXXXXXXXXXXXXX.XXXX CS
         TTL 262 dlksttkldaelkeeliddvlnlvvvp 288
                 d++++ +  + ++++ +dd+ln v v+
  KOO25315.1 296 DMSRNAAPLRAIVDQGLDDLLN-V-VL 320
                 **********************.3.33 PP

>> ATPgrasp_YheCD  YheC/D like ATP-grasp
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.9   0.0    0.0011       6.6      91     129 ..     122     162 ..     105     187 .. 0.78
   2 !   23.7   0.0     4e-09   2.4e-05     180     232 ..     247     299 ..     217     316 .. 0.72

  Alignments for each domain:
  == domain 1  score: 5.9 bits;  conditional E-value: 0.0011
  ATPgrasp_YheCD  91 slselesllkkllkkkr.ylvQqgidl.atidgrpfDfRvl 129
                       sel ++l++l++++  +++Q ++d    i+ r fD+R  
      KOO25315.1 122 IESELGAILERLFEREHkMIAQRYVDRpLLIERRKFDMRQW 162
                     567899999999987655*******86267999******65 PP

  == domain 2  score: 23.7 bits;  conditional E-value: 4e-09
  ATPgrasp_YheCD 180 ekileeleelalelaealeesfgrlgElGlDlgidkegkvWllEvNskpgrsi 232
                     +++   + +++ +++ ++e +  ++   G+Dl++d +  vWllEvNs p  s 
      KOO25315.1 247 ARMSAVVGDTMRAVCDVIEPRAASFELYGFDLMLDAQYGVWLLEVNSSPDMSR 299
                     3344444556667777777777777777*********************8765 PP

>> ATPgrasp_ST  Sugar-transfer associated ATP-grasp
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.0      0.12   7.1e+02      63      81 ..     107     125 ..      97     145 .. 0.84
   2 ?   10.0   0.0   6.1e-05      0.37     242     270 ..     271     299 ..     257     315 .. 0.87

  Alignments for each domain:
  == domain 1  score: -0.8 bits;  conditional E-value: 0.12
  ATPgrasp_ST  63 vviKpakgsgGkGilvite 81 
                   ++K+++ s G+Gi++ +e
   KOO25315.1 107 WILKAMNMSRGRGITIESE 125
                  689************9876 PP

  == domain 2  score: 10.0 bits;  conditional E-value: 6.1e-05
  ATPgrasp_ST 242 lgylGwDivldeekgplllElNarpglai 270
                    + G D+ ld++ g+ llE+N  p+++ 
   KOO25315.1 271 FELYGFDLMLDAQYGVWLLEVNSSPDMSR 299
                  5678*********************9975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (410 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       558  (0.0311228); expected 358.6 (0.02)
Passed bias filter:                      433  (0.0241508); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.45u 0.25s 00:00:00.70 Elapsed: 00:00:00.37
# Mc/sec: 3324.92
//
Query:       KOO25316.1  [L=611]
Description: sec14 cytosolic factor [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    6.6e-18   64.9   0.0    1.1e-17   64.3   0.0    1.3  1  CRAL_TRIO    CRAL/TRIO domain
     0.0006   20.0   0.0     0.0018   18.5   0.0    1.9  2  DUF1769      Protein of unknown function (DUF1769)
     0.0043   17.2   0.0     0.0072   16.5   0.0    1.3  1  CRAL_TRIO_2  Divergent CRAL/TRIO domain


Domain annotation for each model (and alignments):
>> CRAL_TRIO  CRAL/TRIO domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.3   0.0   1.8e-21   1.1e-17       7     134 ..      82     214 ..      76     222 .. 0.93

  Alignments for each domain:
  == domain 1  score: 64.3 bits;  conditional E-value: 1.8e-21
   CRAL_TRIO   7 gkvgihgrDkegrpvlylrlgrfdpk.....klsleelvralvlvlerllkelee.dgqvegvtvviDlkglslskmlwkp.isllkkilkilqdnype 98 
                 g++ + grD  grpv+++ lg +d        +++e lvr +v  +e l++ l e +++ +g+ ++ Dl g + sk+l  + ++++++i+ i q++ype
  KOO25316.1  82 GMQPLDGRDLAGRPVVVVALGLMDMYllkkrGVTQEMLVRRHVKAMEMLVQRLREaPNPLAGCLLILDLAGCTASKFL--SaWGYIREIAPICQHHYPE 178
                 78899*******************99887776777799*************9999999********************..44***************** PP

   CRAL_TRIO  99 rlgkilivnaPklfkfafklvkpfldektreKikfv 134
                  l k+++v+ +++fk+ +  vk +ld++tr+K+ ++
  KOO25316.1 179 LLSKMYFVHGSFFFKWGIDKVKLLLDPATRDKMELI 214
                 ********************************9876 PP

>> DUF1769  Protein of unknown function (DUF1769)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.5   0.0     3e-07    0.0018       1      53 [.     290     343 ..     290     345 .. 0.90
   2 ?   -3.7   0.0       2.4   1.4e+04      31      38 ..     399     406 ..     398     414 .. 0.68

  Alignments for each domain:
  == domain 1  score: 18.5 bits;  conditional E-value: 3e-07
     DUF1769   1 GddllfGndfdrpirdrlPpgf..saalkfakfiDpglegDlyadkPylysplls 53 
                 +++l  G +fd+p+++ lP  +  ++ l +++ i p+ + Dl  dkP ++ pl+ 
  KOO25316.1 290 AHELATGFEFDHPLQN-LPARTvlRILLSLIRQIAPAASFDLLGDKPVVLNPLFE 343
                 68999*********96.**76668***********************99999875 PP

  == domain 2  score: -3.7 bits;  conditional E-value: 2.4
     DUF1769  31 fiDpgleg 38 
                 +iDp+l +
  KOO25316.1 399 MIDPALVY 406
                 69999965 PP

>> CRAL_TRIO_2  Divergent CRAL/TRIO domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.0   1.2e-06    0.0072       1     106 [.      93     211 ..      93     220 .. 0.71

  Alignments for each domain:
  == domain 1  score: 16.5 bits;  conditional E-value: 1.2e-06
  CRAL_TRIO_2   1 grpVfvfiaafl........lsska.......dldkllryvlhtladkivgke..yvlVyfhtglss.enkpslswlkkvystlprrykknlkklyiv 80 
                  grpV+v+    +                     + k + +++++l +   ++   + l+++  g ++ +   ++++++ +  + + +y++ l k+y+v
   KOO25316.1  93 GRPVVVVALGLMdmyllkkrG---VtqemlvrRHVKAMEMLVQRLREA-PNPLagCLLILDLAGCTAsKFLSAWGYIREIAPICQHHYPELLSKMYFV 186
                  566666666666666543320...134445557888888888888444.332256889999988887244568************************* PP

  CRAL_TRIO_2  81 hpstfvktllktvlsafvsskfrkkv 106
                  h s+f+k  +   +++++ +  r k+
   KOO25316.1 187 HGSFFFKWGI-DKVKLLLDPATRDKM 211
                  ******9888.666666666666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (611 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       274  (0.0152825); expected 358.6 (0.02)
Passed bias filter:                      255  (0.0142228); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.52u 0.23s 00:00:00.75 Elapsed: 00:00:00.40
# Mc/sec: 4614.28
//
Query:       KOO25317.1  [L=748]
Description: tapt1 protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.1e-97  325.9   4.3    4.6e-97  325.3   4.3    1.3  1  DUF747          Eukaryotic membrane protein family
    5.5e-06   26.3   8.1    5.5e-06   26.3   8.1    2.9  2  TRAM_LAG1_CLN8  TLC domain


Domain annotation for each model (and alignments):
>> DUF747  Eukaryotic membrane protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  325.3   4.3  5.1e-101   4.6e-97       2     316 ..      87     410 ..      86     413 .. 0.91

  Alignments for each domain:
  == domain 1  score: 325.3 bits;  conditional E-value: 5.1e-101
      DUF747   2 spaekadllrlllilisvlllslvDtSrvYHyiRaqsfiKLyvvfnvLEvvdrLlsslgqdildalfstttlerekegeeelskllklvlqfllalayv 100
                 s a+ +d+lr+lli+++++ll+ vDtS  YH++R q+++KLyv+fn+LEv+d+L+ss+gqdil++lf+t+++         +++   lv++f++al+yv
  KOO25317.1  87 SYAQSSDVLRALLIIVASVLLLEVDTSHTYHNVRNQATLKLYVIFNLLEVFDKLCSSFGQDILESLFETAHQ--------PRRWKGGLVFDFVIALVYV 177
                 67899*****************************************************************93........23566789*********** PP

      DUF747 101 llHslvlliqvltLnvainSsenaLltllvsnnfvEiKstVFKkfekenlfqivaaDvvERfqllllllivllrnlte..ssseatslaevlsplllvl 197
                 +lH++vl++++++Ln+a+nS++n L+tll+snnfvE+K++VFKk e+e lfq++++DvvERfql++ l ivl++ +    ++++ + l e+   + l+l
  KOO25317.1 178 VLHTMVLFYHAVALNIALNSHNNILITLLISNNFVELKGNVFKKCEREHLFQVACSDVVERFQLSVYLSIVLMQFIFVlkVEWTIDELSELGLSFGLIL 276
                 **************************************************************************987644889999************* PP

      DUF747 198 llEvlVDwvKhayllKFNnikpsvyeeyldvllkDvllsrtkqaqae............vpckafvafshiltrrlGfmelplvtliirvlpqvlslll 284
                 ++E++VDw+Kh++++KFN+i+ps+y  + ++l++D    ++  + ++             ++++  +fs+ ++ r+Gf++lpl +l++rvl + +   +
  KOO25317.1 277 AAELFVDWIKHSFIIKFNRIQPSIYGTFVQILCADARRPSEALSPKSremaaraamaddGQMTSPGEFSTPVAGRMGFVPLPLLCLVVRVLGHDVAPRV 375
                 ***********************************987755544333678999999988777888899999*******************986655544 PP

      DUF747 285 ...llstlvlalliwlvLlllkvllsllllkfaik 316
                      s  ++++l+wl L+++kvl++++ll+fa+ 
  KOO25317.1 376 ylgHPSGWLMCFLLWLSLCFVKVLTGITLLGFACA 410
                 33334888899999******************986 PP

>> TRAM_LAG1_CLN8  TLC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   3.6      0.37   3.3e+03      54     109 ..     142     208 ..      93     257 .. 0.57
   2 !   26.3   8.1   6.2e-10   5.5e-06      90     198 .]     424     533 ..     381     533 .. 0.76

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 0.37
  TRAM_LAG1_CLN8  54 gYfiydllvlllyekkrk.........dfvemliHhiitlvllvlsyv..rnlgrvglvvlllhels 109
                     + f +d+l +l++ +++          dfv  l++ ++++ +l++ +v     ++    +l++  +s
      KOO25317.1 142 SSFGQDILESLFETAHQPrrwkgglvfDFVIALVYVVLHTMVLFYHAValNIALNSHNNILITLLIS 208
                     5566666666664444434455555555555555555333333333332322333333444444444 PP

  == domain 2  score: 26.3 bits;  conditional E-value: 6.2e-10
  TRAM_LAG1_CLN8  90 syvrnlgrvglvvlllhelsdpflnlrkilsylkkkskssklvlfngllfllsFfvcRlvllpylillsildvaklslstap....lwlplifli 180
                     +y+++++ ++++v  +  +   fl+l+++l  l  ++   +l+  + ++f +sFf +R++++p l ++ +ld       +      +++++++l+
      KOO25317.1 424 AYCHYYIIFFAGVAEVSNVPLAFLELGRLLPLL-PEAYP-RLHGAAWAAFSVSFFTVRVLYWPTLAVRFWLDSLGTLHDN-HraqhWPVVRTYLV 515
                     444555555555555555555577888888888.54233.56666679****************9988888887743333.35788********* PP

  TRAM_LAG1_CLN8 181 lllvLqllnlyWfylivk 198
                     ++++L +++l W +++ +
      KOO25317.1 516 ANAILTAMQLGWSFKLAR 533
                     **************9875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (748 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       536  (0.0298957); expected 358.6 (0.02)
Passed bias filter:                      251  (0.0139997); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.58u 0.27s 00:00:00.85 Elapsed: 00:00:00.43
# Mc/sec: 5192.38
//
Query:       KOO25318.1  [L=353]
Description: carbohydrate fggy [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    9.6e-12   45.0   0.0    1.8e-11   44.2   0.0    1.5  1  FGGY_C    FGGY family of carbohydrate kinases, C-terminal dom
    1.3e-05   24.9   0.0    1.8e-05   24.4   0.0    1.2  1  FGGY_N    FGGY family of carbohydrate kinases, N-terminal dom


Domain annotation for each model (and alignments):
>> FGGY_C  FGGY family of carbohydrate kinases, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.2   0.0     2e-15   1.8e-11      37     196 ..     203     351 ..     171     353 .] 0.81

  Alignments for each domain:
  == domain 1  score: 44.2 bits;  conditional E-value: 2e-15
      FGGY_C  37 eyalegsiavagslvawlldnlglreeirdageveeslaelaaaeavadaggvvfvpaf.sglrapywdpdargtitglsssttlahiarAaleavalq 134
                   +l g+ + ag +   +     lre+  dage  e+l ++   +  ++   ++ +     g+r p  dp+a g++  +  ++   ++  ++l ++a  
  KOO25318.1 203 DLWLVGGASNAGCA---V-----LREQAFDAGEL-ERLSSAIDPSVPPPYTDYYPLSSStVGERFPRPDPNAVGVLSPVPPER--RDFLHCILHGLAVV 290
                 34444444444444...1.....34445688888.88888778888888888888877779*************999999888..9************* PP

      FGGY_C 135 lrailealekdsgkpldrlavdGGgskndllmqllAdilgvpVerpktaeatalGaAilAav 196
                  +++++al++   +pl+r++++GGg++n+ + +l   +l vp  r+++   +a GaA+lA+ 
  KOO25318.1 291 EKQGYDALAELGASPLRRVLTSGGGAQNPQWTRLRQKMLSVPTSRAAN-IEAAYGAAMLACR 351
                 ***********999****************************998885.55799******85 PP

>> FGGY_N  FGGY family of carbohydrate kinases, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.4   0.0     2e-09   1.8e-05     166     244 ..      80     161 ..      53     162 .. 0.76

  Alignments for each domain:
  == domain 1  score: 24.4 bits;  conditional E-value: 2e-09
                 T--EEEHHHHCTTTSEETTTTEE-HHHHHHTT--GG..........GS-EEE-TCCEEEEEECCCCCCTT.S-EEEEEEEEEHHHHHHH CS
      FGGY_N 166 gqfvtdvtnasesmlfnikklewdeellailgipee..........lLPklvesseiigelkpelaaklGlkegvpvvggggDqqaaal 244
                 g        a +s + n  kl +d ++l++ +   +          +LP++v+++e i ++ p +aa +Gl  + +vvgg+ D  aa l
  KOO25318.1  80 G-------SAPTSDWHNALKLGYDVQALQYPAWMSAgspigeaigmALPPVVPPGEPISTVSPDVAARWGLPIECIVVGGTTDSIAAFL 161
                 4.......445555555555555555555544444334444459999*************************************99976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (353 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       238  (0.0132746); expected 358.6 (0.02)
Passed bias filter:                      204  (0.0113782); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.45u 0.23s 00:00:00.68 Elapsed: 00:00:00.41
# Mc/sec: 2608.00
//
Query:       KOO25319.1  [L=427]
Description: hypothetical protein Ctob_008436 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.1e-12   47.8  11.6    2.7e-12   46.5  11.6    1.8  1  zf-CW     CW-type Zinc Finger
    5.7e-07   30.1   0.0    3.7e-06   27.4   0.0    2.3  2  SET       SET domain


Domain annotation for each model (and alignments):
>> zf-CW  CW-type Zinc Finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.5  11.6     3e-16   2.7e-12       1      47 [.     269     315 ..     269     316 .. 0.92

  Alignments for each domain:
  == domain 1  score: 46.5 bits;  conditional E-value: 3e-16
       zf-CW   1 ywVqCdkClKWRrlptev.dkselipekWvCsmnpsdkkensCdapee 47 
                 +w++CdkC+KWRrlp +    +  +pekW+C mnp + ++nsCd  ee
  KOO25319.1 269 NWACCDKCEKWRRLPAGPeYCDAALPEKWFCYMNP-NTHRNSCDKREE 315
                 6****************877777778*********.8*********98 PP

>> SET  SET domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.4   0.0   4.2e-10   3.7e-06       1     169 []     116     239 ..     116     239 .. 0.85
   2 ?   -1.7   0.3      0.37   3.3e+03      55      78 ..     381     404 ..     304     419 .. 0.62

  Alignments for each domain:
  == domain 1  score: 27.4 bits;  conditional E-value: 4.2e-10
                 SCEEEESSXBXTTXEEEEEE.ECCEECHHHHHHHHHH..HTEEEEEXGGXXGGSXHHHHHHHTTSSHHHHHHHHHHHHHHHHHHTHHHHHHHXTTTSXX CS
                 xxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
         SET   1 GrGvfAtedIpkgeficeyp.eeiiltkdeadksele..aylfslpeapknlaftkelakasastllqklakdqkqaekedtdaalkasskaesdlnas 96 
                 G Gv++t++I+k+++++e + +  +l++++++  + e  +y+fs +                                  d++ + k+    e ++   
  KOO25319.1 116 GLGVCCTQPIRKHQIVGEACgR--VLSDAQYNALVREegEYIFSFD----------------------------------DEMLERKRLARDELRY--- 175
                 89******************77..***********99*******99..................................3333334444334444... PP

                 XHCCCCCHCCCHEEEETEEEEEECCCGTTGGGCEEXS.SSSEEEEEEEE............TTSSEEEEEESSXBXTTEEEEEXTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxx............xxxxxxxxxxxxxxxxxxxxxxxxx RF
         SET  97 kpeagafsaiagysidaralksgngagplarflNHsC.dpNcnltvqnv............lrgprvavfAtrdIkkGeEltidYg 169
                               id   +k+gn +    r+lN    dp +  +++++            +   r+ + A r I++  Elt+dYg
  KOO25319.1 176 --------------ID--LRKYGNLM----RLLNDEQmDPPL--RLVYWppappagaaateQLPQRIFLQAARAIPALAELTWDYG 239
                 ..............99..66******....****55349999..8888889*********99***********************8 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 0.37
                 HHHHHTTSSHHHHHHHHHHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxx RF
         SET  55 lakasastllqklakdqkqaeked 78 
                   ++++  + ++  ++ k++ +ed
  KOO25319.1 381 SDSEETREEKRANRAELKRQRQED 404
                 222333333333333333333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (427 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       911  (0.0508115); expected 358.6 (0.02)
Passed bias filter:                      529  (0.0295053); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.52u 0.29s 00:00:00.81 Elapsed: 00:00:00.45
# Mc/sec: 2882.24
//
Query:       KOO25320.1  [L=280]
Description: protein disulfide-isomerase a4 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
      4e-32  110.3   0.0    5.5e-30  103.4   0.0    2.1  2  Thioredoxin    Thioredoxin
    5.8e-07   29.2   0.0    0.00036   20.0   0.0    2.1  2  OST3_OST6      OST3 / OST6 family, transporter family
    9.9e-05   22.8   0.1      0.001   19.5   0.1    2.4  2  Thioredoxin_2  Thioredoxin-like domain
    0.00032   19.9   0.0    0.00051   19.2   0.0    1.3  1  Calsequestrin  Calsequestrin
     0.0052   16.9   0.0     0.0093   16.1   0.0    1.4  1  Thioredoxin_7  Thioredoxin-like
     0.0093   16.2   0.4      0.033   14.5   0.1    2.1  2  Kelch_6        Kelch motif
  ------ inclusion threshold ------
      0.044   13.8   0.5       0.08   13.0   0.5    1.4  1  Kelch_4        Galactose oxidase, central domain
      0.059   13.7   0.0        1.8    9.0   0.0    2.3  2  Thioredoxin_8  Thioredoxin-like


Domain annotation for each model (and alignments):
>> Thioredoxin  Thioredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  103.4   0.0   2.4e-33   5.5e-30       2     103 .]      56     158 ..      55     158 .. 0.96
   2 ?    4.9   0.0     0.011        26      58      97 ..     226     266 ..     199     274 .. 0.74

  Alignments for each domain:
  == domain 1  score: 103.4 bits;  conditional E-value: 2.4e-33
                  EEESSHHHHHHHHTTTSSEEEEEEE-TTSHHHHCHHHHHHHHHHHCTT...TSEEEEEETTTSHHHHHHTT-SSSSEEEEEETTEEEEEEESS-HHHH CS
  Thioredoxin   2 vlvltkenFeeevakekklvlveFyApwCghCkalaPeleklaeelkd...kvklakvdvdenedlakkyevegiPtlklfkngkevkkyegarekek 96 
                  v+vl  +nF++ ++  k   lveFyApwCghCk+laPe++++a+++ +    v lakvd+d+++dla++++++g+Pt+k+fk+g  +++yeg re++ 
   KOO25320.1  56 VAVLDPTNFDSFLEG-KAFTLVEFYAPWCGHCKSLAPEWAAAAKKTLKlspPVILAKVDADAHRDLAERFGISGYPTIKIFKDGT-PEEYEGPREAKG 151
                  788999********9.***************************99988899*********************************9.9*********** PP

                  HHHHHHH CS
  Thioredoxin  97 laaflkk 103
                  +++f+k+
   KOO25320.1 152 IVSFIKE 158
                  ****985 PP

  == domain 2  score: 4.9 bits;  conditional E-value: 0.011
                  TTTSHHHHHHTT-SSSSEEEEEETTE.EEEEEESS-HHHHH CS
  Thioredoxin  58 vdenedlakkyevegiPtlklfkngk.evkkyegarekekl 97 
                    + + +a+ ++v+  P+l+lf+ g  e++++   r+k+++
   KOO25320.1 226 SYSIDPVAAALGVKTPPALLLFRPGVeEAASMPIPRKKDEF 266
                  556678999****************9667777777777766 PP

>> OST3_OST6  OST3 / OST6 family, transporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.0   0.0   1.6e-07   0.00036      46     141 ..      83     165 ..      49     193 .. 0.83
   2 !    7.3   0.0    0.0012       2.6      87     137 ..     232     279 ..     220     280 .] 0.81

  Alignments for each domain:
  == domain 1  score: 20.0 bits;  conditional E-value: 1.6e-07
   OST3_OST6  46 CelCrefepefelvakswrkdekskskklfFakvdfdegkdvFqklglnsaPhlllfppkkgpkeskkkdtydfsrggfdaealakfisertg.vki 141
                 C  C+ ++pe+ + ak   k     s  ++ akvd d  +d+ +++g++  P + +f+  +       +++y+ +    +a+ +++fi+e +g +  
  KOO25320.1  83 CGHCKSLAPEWAAAAKKTLKL----SPPVILAKVDADAHRDLAERFGISGYPTIKIFKD-G------TPEEYEGP---REAKGIVSFIKEALGvTAG 165
                 ******************999....579*****************************98.3......35677765...4888999999998885444 PP

  == domain 2  score: 7.3 bits;  conditional E-value: 0.0012
   OST3_OST6  87 vFqklglnsaPhlllfppkkgpkeskkkdtydfsrg..gfdaealakfisert 137
                 v + lg+++ P lllf p    +   ++ +++++r+  +f+ +al+++++ ++
  KOO25320.1 232 VAAALGVKTPPALLLFRPGV--E---EAASMPIPRKkdEFNEDALVDWLKGHL 279
                 56789*************44..4...66777777773366*********9887 PP

>> Thioredoxin_2  Thioredoxin-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.5   0.1   4.5e-07     0.001       6      96 ..      72     143 ..      68     158 .. 0.71
   2 ?   -1.9   0.0         2   4.5e+03      72      89 ..     232     250 ..     197     258 .. 0.64

  Alignments for each domain:
  == domain 1  score: 19.5 bits;  conditional E-value: 4.5e-07
  Thioredoxin_2   6 kpvlvvftdpdCpyCkklkkelkelddvtvrvllfplkpsfepkavaiwcakekkkafkdieenvelarkygvrgtPtiv.fldgk.eivarl 96 
                      +lv f++p+C+ Ck l  e       +++     lk s   + ++++ +           ++++la+++g++g Pti  f dg+ e   ++
     KOO25320.1  72 AFTLVEFYAPWCGHCKSLAPEWAAA--AKKT-----LKLSPPVILAKVDAD-----------AHRDLAERFGISGYPTIKiFKDGTpE---EY 143
                    568899**************99999..4444.....444422344444433...........4568************7669999953...33 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 2
  Thioredoxin_2  72 larkygvrgtPtiv.fldg 89 
                    +a ++gv+  P+++ f +g
     KOO25320.1 232 VAAALGVKTPPALLlFRPG 250
                    4566788888886524444 PP

>> Calsequestrin  Calsequestrin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.2   0.0   2.3e-07   0.00051      96     229 ..     109     254 ..      99     280 .] 0.72

  Alignments for each domain:
  == domain 1  score: 19.2 bits;  conditional E-value: 2.3e-07
                    EEEEETTTTHHHHHCCT--STTEEEEEETTCEEEE-S--SHHHHHHHH...HCCCS-SEEEE-SHHHHHHHHH--SS-EEEEE-S-..TTSHHHHH CS
  Calsequestrin  96 fvlvdakkeaklakklgldevdslyvlkgdevieydgefaadvlvefl...ldlledpveliesklelqaferiedeikligyfks..keseyyka 186
                    ++ vda+ +  la ++g++   ++ ++k     ey+g   a  +v f+   l +    v+ +++  e++a++  e    l+g f+   k s  +k 
     KOO25320.1 109 LAKVDADAHRDLAERFGISGYPTIKIFKDGTPEEYEGPREAKGIVSFIkeaLGVTAGSVQRLKAADEVEALK-AETGFLLLGLFREpvKASAMFKV 203
                    56799******************************************9333556678899999999999985.699999*****954499****** PP

                    HHHHHHCCTTTSE......EEEE--.HHHHHHCT--TT.EEEEE-TT-SS- CS
  Calsequestrin 187 feeaaeefqpyik......ffatfd.kkvakklslkln.evdfyeafmeep 229
                    f e a e+  y +      + a++  + va  l +k    + ++ + +ee 
     KOO25320.1 204 FTEVASELPSYTHkpvkaaYSASYSiDPVAAALGVKTPpALLLFRPGVEEA 254
                    ******998885311111133333312366666666541345556666665 PP

>> Thioredoxin_7  Thioredoxin-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.0   4.2e-06    0.0093      21      81 ..      75     135 ..      66     137 .. 0.82

  Alignments for each domain:
  == domain 1  score: 16.1 bits;  conditional E-value: 4.2e-06
                    EEEE--TT-HHHHHH.HHHHHH-HHHHH.HHHT-EEEEESS--S-GGG.-TT---SSEEEEE CS
  Thioredoxin_7  21 lvffgaswcftCqal.erdflsdeevkaalaekfvllrvdvterdanileldeqgvPvvafl 81 
                    lv f a wc++C+ l  ++ + +++  + l+  ++l +vd +   +   ++  +g+P++ ++
     KOO25320.1  75 LVEFYAPWCGHCKSLaPEWAAAAKKTLK-LSPPVILAKVDADAHRDLAERFGISGYPTIKIF 135
                    89*************7789999999999.***********9666653324444889998776 PP

>> Kelch_6  Kelch motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.5   0.1   1.5e-05     0.033      17      47 ..       2      37 ..       1      40 [. 0.83
   2 ?   -1.4   0.0       1.5   3.3e+03      41      50 .]     252     261 ..     249     261 .. 0.87

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 1.5e-05
     Kelch_6 17 fGGytds.....spylnkvwvydpetksWeqlpplp 47
                fGG++ +        + ++w++d++  +W++++  p
  KOO25320.1  2 FGGSGYGdkahgYGVTQDLWRFDVSQQRWTFVGGNP 37
                77777777788888899**************99766 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 1.5
     Kelch_6  41 eqlpplpvpr 50 
                 e+ +++p+pr
  KOO25320.1 252 EEAASMPIPR 261
                 7889*****9 PP

>> Kelch_4  Galactose oxidase, central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.5   3.5e-05      0.08      17      42 ..       1      31 [.       1      39 [. 0.84

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 3.5e-05
     Kelch_4 17 lfGGrgedg.....tllndlylldlstntWr 42
                +fGG g  +     ++  dl+++d+s+ +W+
  KOO25320.1  1 MFGGSGYGDkahgyGVTQDLWRFDVSQQRWT 31
                68888886678*******************8 PP

>> Thioredoxin_8  Thioredoxin-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.0   0.0    0.0008       1.8       4      36 ..      74     107 ..      71     119 .. 0.78
   2 ?    4.7   0.0     0.017        37      52      88 ..      99     134 ..      92     139 .. 0.76

  Alignments for each domain:
  == domain 1  score: 9.0 bits;  conditional E-value: 0.0008
                    EEEEE--SSSHHHHHHHHHHHHHHHHHHH.TTSE CS
  Thioredoxin_8   4 vlLyfgaswcppckaftpklkelyeklkk.kkkv 36 
                    +l+ f+a wc +ck   p+  +  +k  k ++ v
     KOO25320.1  74 TLVEFYAPWCGHCKSLAPEWAAAAKKTLKlSPPV 107
                    7899***************999888877655444 PP

  == domain 2  score: 4.7 bits;  conditional E-value: 0.017
                    HHGGGS-TTSEE.EE-TT-HHHHTT-S--TT-SEEEE CS
  Thioredoxin_8  52 kylkknkkpwlsvpfddkkrnklkkkynvkaiPtlvv 88 
                    k+lk   +p +   +d + +  l+++++++++Pt+ +
     KOO25320.1  99 KTLKLS-PPVILAKVDADAHRDLAERFGISGYPTIKI 134
                    445544.66777778888999************9866 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (280 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       317  (0.0176809); expected 358.6 (0.02)
Passed bias filter:                      303  (0.0169); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.43u 0.26s 00:00:00.69 Elapsed: 00:00:00.42
# Mc/sec: 2019.06
//
Query:       KOO25321.1  [L=647]
Description: histone deacetylase superfamily protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.4e-71  241.5   0.0    1.4e-71  241.5   0.0    1.7  2  Hist_deacetyl  Histone deacetylase domain


Domain annotation for each model (and alignments):
>> Hist_deacetyl  Histone deacetylase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  241.5   0.0   7.7e-76   1.4e-71      38     306 ..      90     425 ..      50     426 .. 0.84
   2 ?   -4.1   2.9      0.48   8.5e+03      40     102 ..     459     525 ..     437     539 .. 0.49

  Alignments for each domain:
  == domain 1  score: 241.5 bits;  conditional E-value: 7.7e-76
                    HHTTTS-HHHHHHHHCHHHHCHHT.TTHCCHHHCCTST..SSSSSTHCTTTCCHHHHHHHHHHHHHHHHHHTTSSSEEEETTSS--TT-BT..... CS
                    xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..... RF
  Hist_deacetyl  38 ellkvHskeYlelleslsnelkkkeeakekeleeiask..lldddtpvspktlkaallavgavleavdavlsgsvkaafvlvrPpgHHaka..... 126
                     +++vH+++Yl++l+s +++l++k + ++      a++   +++dt+vs ++l+aal a+  +++avdav++g++++af+++rPpgHHa a     
     KOO25321.1  90 AVRAVHTRRYLDKLRSRCEHLSAKARQPNRLRPPLARNlsGVTGDTFVSASSLSAALCAALTACRAVDAVARGECPNAFAAIRPPGHHAGAdgtta 185
                    6789****************9999977777777777634457999********************************************7446666 PP

                    .........................................................TB-B.TTBSS-HHHHHHHHHHHCC-..SS-EEEEE-SSS CS
                    .........................................................xxxx.xxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxx RF
  Hist_deacetyl 127 .........................................................seas.GFClvNnvaiaikylqakhe..lkrvailDvDvH 162
                                                                             ++++ GFCl+Nn+aia+k++  ++   ++rvai+DvD+H
     KOO25321.1 186 gplsfaaaasaaagtastvtgssatsaassstslaigsgaesdtasdsgavsdanadDRCGqGFCLLNNAAIAAKHALLRYPeiVRRVAIIDVDLH 281
                    66666666666666666666666666666666666666666666666655555444433336***************775544699********** PP

                    --HHHHHHCTT-TTEEEEEEEE-CCTSTTSS--TT---SGGGTTSEEEEEE-TT-BHHHHHHHHHHCHHHHHCCH--SEEEEEE-STTBTTS...T CS
                    xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...x RF
  Hist_deacetyl 163 hGnGteeafysdpdvltlSiHryegifyPgtgaledlgegkgkgfnlnvpleegtgdeeylkvfeeilrpvleefkPdlilvsaGfDalkgd...p 255
                    hGnGtee+++  pdvl++S+H  e++f+P tg+  d+     +   +nvpl++gt  e+yl++++e + p++++f Pdli++s GfDa+++d    
     KOO25321.1 282 HGNGTEEIVRTWPDVLYASLHGCEDNFFPMTGTELDV-----SSRLVNVPLPRGTPPEKYLAAYDEHVAPAVRAFAPDLIIISTGFDAHRDDapdL 372
                    *********************************9999.....4689**********************************************9944 PP

                    T-S-BB-HHHHHHHHHHHCCCHGS-.G..EEEEE-S---HHHHHHHHHHHHHH CS
                    xxxxxxxxxxxxxxxxxxxxxxxxx.x.xxxxxxxxxxxxxxxxxxxxxxxxx RF
  Hist_deacetyl 256 lgelnlsvegykeltkklaeladkv.k.kvvllleGGYnlealaravtavlsa 306
                     g l ls++ ++elt++la+la ++   ++v+lleGGYnl+a+a+++ a+++ 
     KOO25321.1 373 SGFLALSESTFAELTRRLARLAVDCcAgRMVSLLEGGYNLKAIAKCARAHVAE 425
                    5556*******************99988********************99976 PP

  == domain 2  score: -4.1 bits;  conditional E-value: 0.48
                    TTTS-HHHHHHHHCHHHHCHHT.TTHCCHHHCCTS....TSSSSSTHCTTTCCHHHHHHHHHHHHHH CS
                    xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx....xxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Hist_deacetyl  40 lkvHskeYlelleslsnelkkkeeakekeleeias....klldddtpvspktlkaallavgavleav 102
                    +kvH ++  ++ +++++   k++++++k ++e a+    +  + +  ++ + ++a  la+ a  +a+
     KOO25321.1 459 EKVHAEAQAKADAEAAKAGAKQQKIEAKANAEAAKaekaEAAEAKALAKAQAAEAKALAAEAKAHAA 525
                    5555555555555555555555555555555555322221233333444444444444444443333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (647 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2235  (0.124658); expected 358.6 (0.02)
Passed bias filter:                      849  (0.0473534); expected 358.6 (0.02)
Passed Vit filter:                       166  (0.00925874); expected 17.9 (0.001)
Passed Fwd filter:                        14  (0.000780858); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.89u 0.32s 00:00:01.21 Elapsed: 00:00:00.45
# Mc/sec: 4295.76
//
Query:       KOO25322.1  [L=247]
Description: mitochondrial inner membrane protein oxa1-like protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.7e-25   87.9   0.0    8.5e-25   87.6   0.0    1.1  1  60KD_IMP  60Kd inner membrane protein


Domain annotation for each model (and alignments):
>> 60KD_IMP  60Kd inner membrane protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   87.6   0.0   4.7e-29   8.5e-25       1     160 [.      44     241 ..      44     246 .. 0.84

  Alignments for each domain:
  == domain 1  score: 87.6 bits;  conditional E-value: 4.7e-29
    60KD_IMP   1 yglaIilltiivrlillpltlkqlkssakmqelqPelkeiqekyk...........kdkqklqqemmklYkkegvnplaGclplLiqlpifialyrvlr 88 
                 +++ I l t +vrl llpl++ q k+ a+m+ ++P+l+++ +++k           ++++k+  e+++l+  ++v p+++++ +L q+p++++++ ++r
  KOO25322.1  44 WWMTIALTTATVRLSLLPLQVYQSKAIARMAVIKPHLDQLSAQMKagsakgtdkgyEEAEKARLELQALFAHHNVKPWMSIVGALGQIPLWLSFFFTMR 142
                 8899***********************************************9888666799************************************** PP

    60KD_IMP  89 sla............sfwikdLsapd....lpillavttflqqkls...ksk.........kmqkmmlyvmplmilffslsfpaglvlYwlvsnllsia 159
                 ++              +w++dL+a+d    lp++ ++t f   +l    + +         +++++++  + l+++ +++ f++g+ +Yw+ +n+  + 
  KOO25322.1 143 HMVrvdgglgldtggALWFQDLTARDpyfvLPVMCGATFFGMVSLGdpgQ-ApgvaldarqEQMRTFMKGVALLMVPTTAWFESGVFVYWISTNMPRTK 240
                 *8878887777666555*******99999999999998775544444331.1233333333336777799999999999**************987766 PP

    60KD_IMP 160 q 160
                 q
  KOO25322.1 241 Q 241
                 6 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (247 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       427  (0.0238162); expected 358.6 (0.02)
Passed bias filter:                      335  (0.0186848); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.28s 00:00:00.70 Elapsed: 00:00:00.42
# Mc/sec: 1771.56
//
Query:       KOO25323.1  [L=538]
Description: hypothetical protein Ctob_010845 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (538 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       547  (0.0305092); expected 358.6 (0.02)
Passed bias filter:                      376  (0.0209716); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.52u 0.23s 00:00:00.75 Elapsed: 00:00:00.39
# Mc/sec: 4137.47
//
Query:       KOO25324.1  [L=97]
Description: pre-mRNA-splicing factor [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.7e-39  135.4   5.3      3e-39  135.3   5.3    1.0  1  Cwf_Cwc_15  Cwf15/Cwc15 cell cycle control protein


Domain annotation for each model (and alignments):
>> Cwf_Cwc_15  Cwf15/Cwc15 cell cycle control protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  135.3   5.3   1.7e-43     3e-39     150     247 .]       1      97 []       1      97 [] 0.97

  Alignments for each domain:
  == domain 1  score: 135.3 bits;  conditional E-value: 1.7e-43
                 ------------------------------------------...------------TTTS-SS-S-SSS----STTS--S-TTSSSHHHHHHHHSB. CS
  Cwf_Cwc_15 150 lrELekikreraeekerkerekaeeeekereeeiatgNpLlnlkskeesedfkvkrrWdddvvFknqargeeekkkkeFvnDllRsdFHkkFlkkyik 247
                 +rELe+ik+era+e++rkere++e++++e+e+ +++gNpLl+ +++ + ++f+vkrrWdddvvFknq+r+ +++++ +F+nD++R+dFH++Fl+ky+k
  KOO25324.1   1 MRELERIKKERAQEATRKEREAKEDAAAEHESAVLQGNPLLDPTRAGAPSTFAVKRRWDDDVVFKNQSREPKKEGR-RFINDTVRNDFHRRFLNKYVK 97 
                 8*****************************************9999999********************9888777.********************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (97 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1127  (0.0628591); expected 358.6 (0.02)
Passed bias filter:                      509  (0.0283898); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.35u 0.25s 00:00:00.60 Elapsed: 00:00:00.38
# Mc/sec: 773.02
//
Query:       KOO25325.1  [L=545]
Description: axoneme central apparatus [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    3.4e-09   36.2  17.0     0.0071   16.5   0.1    6.6  6  HEAT          HEAT repeat
    1.4e-08   34.5  24.3      0.033   14.3   0.5    7.2  6  Arm           Armadillo/beta-catenin-like repeat
    2.7e-08   34.1  18.2     0.0062   16.9   0.8    5.6  7  HEAT_2        HEAT repeats
      1e-06   28.9   0.2       0.04   14.0   0.0    2.4  2  Cnd1          non-SMC mitotic condensation complex subunit 1
    0.00044   20.4   1.7      0.027   14.7   0.1    2.7  2  RICTOR_V      Rapamycin-insensitive companion of mTOR, domain
     0.0012   17.5   1.0      0.013   14.1   0.8    2.5  1  Adaptin_N     Adaptin N terminal region
  ------ inclusion threshold ------
      0.049   13.8   0.5         52    4.0   0.1    4.3  5  V-ATPase_H_C  V-ATPase subunit H
      0.081   13.5  23.5       0.25   11.9   0.6    5.9  8  HEAT_EZ       HEAT-like repeat


Domain annotation for each model (and alignments):
>> HEAT  HEAT repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.1   3.2e-06    0.0071       1      28 [.      75     102 ..      75     104 .. 0.96
   2 !   15.3   0.3   7.9e-06     0.018       5      30 ..     164     189 ..     161     189 .. 0.93
   3 !    6.9   0.1    0.0038       8.4       2      30 ..     203     231 ..     202     231 .. 0.93
   4 ?    3.1   0.2     0.066   1.5e+02       6      25 ..     249     268 ..     245     274 .. 0.84
   5 ?    0.8   0.1      0.36     8e+02      19      30 ..     344     355 ..     343     356 .. 0.88
   6 ?   -1.3   0.1       1.7   3.7e+03      19      28 ..     387     396 ..     375     397 .. 0.78

  Alignments for each domain:
  == domain 1  score: 16.5 bits;  conditional E-value: 3.2e-06
                 HHHHHHHHHT-SSHHHHHHHHHHHHHHH CS
        HEAT   1 llPlllkllsDpspeVReaAakaLgala 28 
                 l+P + +ll+D +p VRe+A +a+g+l+
  KOO25325.1  75 LMPEMRSLLTDVAPTVRENAMLAVGRLC 102
                 79999**********************9 PP

  == domain 2  score: 15.3 bits;  conditional E-value: 7.9e-06
                 HHHHHT-SSHHHHHHHHHHHHHHHHC CS
        HEAT   5 llkllsDpspeVReaAakaLgalaev 30 
                 +++ l+D++++  +aA+++L+ +a++
  KOO25325.1 164 VCERLEDTDSQTKQAAVWCLCSIASH 189
                 7999*******************986 PP

  == domain 3  score: 6.9 bits;  conditional E-value: 0.0038
                 HHHHHHHHT-SSHHHHHHHHHHHHHHHHC CS
        HEAT   2 lPlllkllsDpspeVReaAakaLgalaev 30 
                 +Pll+ +l+  s   R+ ++ +Lg +a++
  KOO25325.1 203 VPLLILCLKEHSLPLRRLTLSCLGSIAKH 231
                 79999999999999*************96 PP

  == domain 4  score: 3.1 bits;  conditional E-value: 0.066
                 HHHHT-SSHHHHHHHHHHHH CS
        HEAT   6 lkllsDpspeVReaAakaLg 25 
                 ++ ls+p++  R+ A++aL+
  KOO25325.1 249 VEFLSSPDMLLRRHACRALA 268
                 5679**************97 PP

  == domain 5  score: 0.8 bits;  conditional E-value: 0.36
                 HHHHHHHHHHHC CS
        HEAT  19 aAakaLgalaev 30 
                 +Aa a+g+++ +
  KOO25325.1 344 SAAAAIGHICDG 355
                 79********86 PP

  == domain 6  score: -1.3 bits;  conditional E-value: 1.7
                 HHHHHHHHHH CS
        HEAT  19 aAakaLgala 28 
                   +++Lga++
  KOO25325.1 387 VLCQCLGAMS 396
                 5689999985 PP

>> Arm  Armadillo/beta-catenin-like repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.7   0.0     0.062   1.4e+02      14      40 ..      76     102 ..      72     103 .. 0.86
   2 !   13.2   0.6   3.1e-05      0.07       6      41 .]     153     188 ..     148     188 .. 0.89
   3 !   14.3   0.5   1.5e-05     0.033       5      40 ..     194     229 ..     191     230 .. 0.91
   4 !   10.8   0.1   0.00018      0.39      10      36 ..     241     267 ..     234     268 .. 0.92
   5 ?    3.7   0.2      0.03        67      10      27 ..     324     343 ..     324     354 .. 0.69
   6 ?    1.6   0.8      0.14   3.1e+02      10      38 ..     365     397 ..     357     398 .. 0.76

  Alignments for each domain:
  == domain 1  score: 2.7 bits;  conditional E-value: 0.062
                 HHHHHHHTTTSSHHHHHHHHHHHHHHT CS
         Arm  14 vppLvrLLssedeevqeeAawALsNLa 40 
                 +p   +LL++  ++v+e+A  A++ L+
  KOO25325.1  76 MPEMRSLLTDVAPTVRENAMLAVGRLC 102
                 677789*************99999888 PP

  == domain 2  score: 13.2 bits;  conditional E-value: 3.1e-05
                 HHHHHTTHHHHHHHHTTTSSHHHHHHHHHHHHHHTT CS
         Arm   6 davieaGavppLvrLLssedeevqeeAawALsNLaa 41 
                  + +e++a+ + ++ L+++d +++++A+w+L+ +a+
  KOO25325.1 153 HLAVEHNALVAVCERLEDTDSQTKQAAVWCLCSIAS 188
                 5679999*************************9986 PP

  == domain 3  score: 14.3 bits;  conditional E-value: 1.5e-05
                 HHHHHHTTHHHHHHHHTTTSSHHHHHHHHHHHHHHT CS
         Arm   5 kdavieaGavppLvrLLssedeevqeeAawALsNLa 40 
                   av+eaGavp L+ +L+  +  +++  +++L+ +a
  KOO25325.1 194 ASAVVEAGAVPLLILCLKEHSLPLRRLTLSCLGSIA 229
                 579*******************99999999999987 PP

  == domain 4  score: 10.8 bits;  conditional E-value: 0.00018
                 HTTHHHHHHHHTTTSSHHHHHHHHHHH CS
         Arm  10 eaGavppLvrLLssedeevqeeAawAL 36 
                 + Ga+ + v++Lss+d  +++ A++AL
  KOO25325.1 241 KEGALSAAVEFLSSPDMLLRRHACRAL 267
                 78************************9 PP

  == domain 5  score: 3.7 bits;  conditional E-value: 0.03
                 HTTHHHHHHHHTT..TSSHH CS
         Arm  10 eaGavppLvrLLs..sedee 27 
                 ++Gavp Lv+ ++  + +++
  KOO25325.1 324 DLGAVPLLVAHMRqgHASPT 343
                 5799****999996555554 PP

  == domain 6  score: 1.6 bits;  conditional E-value: 0.14
                 HTTHHHHHHHHTT....TSSHHHHHHHHHHHHH CS
         Arm  10 eaGavppLvrLLs....sedeevqeeAawALsN 38 
                 ++G+++   +LL      + + v++++++A+sN
  KOO25325.1 365 QLGVLETIHALLAshapVPVCVVLCQCLGAMSN 397
                 56666666666666666778889********99 PP

>> HEAT_2  HEAT repeats
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.4   0.1    0.0013       2.8      32      61 ..      75     105 ..      62     124 .. 0.79
   2 !    6.5   0.1    0.0049        11      35      61 ..      78     105 ..      77     155 .. 0.68
   3 !   16.8   0.4   2.9e-06    0.0066       3      64 ..     163     235 ..     161     242 .. 0.80
   4 !   16.9   0.8   2.8e-06    0.0062       3      85 ..     247     349 ..     244     352 .. 0.74
   5 ?   -1.9   0.1       2.1   4.6e+03      36      59 ..     372     396 ..     355     407 .. 0.52
   6 ?   -1.9   0.0       2.1   4.6e+03      23      40 ..     441     458 ..     429     488 .. 0.50
   7 ?   -0.0   0.0      0.52   1.2e+03      51      69 ..     499     517 ..     492     523 .. 0.78

  Alignments for each domain:
  == domain 1  score: 8.4 bits;  conditional E-value: 0.0013
      HEAT_2  32 alpaLvellededpavRraaaeaLgai.gdp 61 
                 ++p +++ll+d  p vR++a  a g++ g++
  KOO25325.1  75 LMPEMRSLLTDVAPTVRENAMLAVGRLcGLS 105
                 5899*********************864443 PP

  == domain 2  score: 6.5 bits;  conditional E-value: 0.0049
      HEAT_2  35 aLvellededpavRraaaeaLgai.gdp 61 
                  +++ll+d  p vR++a  a g++ g++
  KOO25325.1  78 EMRSLLTDVAPTVRENAMLAVGRLcGLS 105
                 5677788888888888888887653332 PP

  == domain 3  score: 16.8 bits;  conditional E-value: 2.9e-06
      HEAT_2   3 aLlqalendpdpevrraairaLgrignpea...........lpaLvellededpavRraaaeaLgaigd.peal 64 
                 a +++l +d d ++++aa+++L +i++ ea           +p+L+ +l+ ++   Rr     Lg i+  +++l
  KOO25325.1 163 AVCERL-EDTDSQTKQAAVWCLCSIASHEAplasavveagaVPLLILCLKEHSLPLRRLTLSCLGSIAKhEQVL 235
                 67999*.9***************999884444444555555************************997525444 PP

  == domain 4  score: 16.9 bits;  conditional E-value: 2.8e-06
      HEAT_2   3 aLlqalendpdpevrraairaLg..rignp........ealpaLvellededpavRraaaeaLgaig...........dpealpaLkellddddddvvR 80 
                 a +++l ++pd  +rr+a+raL+  +++++         a+++Lve ++ +dp++ + aa+ + +++           d  a+p+L + +++ + + + 
  KOO25325.1 247 AAVEFL-SSPDMLLRRHACRALAcaTQHHTganewvpaPARKLLVETMQVADPETLAFAATLAQQLAkhsnsvassfhDLGAVPLLVAHMRQGHASPTS 344
                 678999.9****************9445543444444466********999999999999888777423232222222455999999999999999888 PP

      HEAT_2  81 eaAae 85 
                 +aAa+
  KOO25325.1 345 AAAAI 349
                 77765 PP

  == domain 5  score: -1.9 bits;  conditional E-value: 2.1
      HEAT_2  36 Lvellededp.avRraaaeaLgaig 59 
                 ++ ll ++ p  v    ++ Lga+ 
  KOO25325.1 372 IHALLASHAPvPVCVVLCQCLGAMS 396
                 4444433333124444444444443 PP

  == domain 6  score: -1.9 bits;  conditional E-value: 2.1
      HEAT_2  23 aLgrignpealpaLvell 40 
                 aLg++++  +l  L+e l
  KOO25325.1 441 ALGKCASYPVLVFLLERL 458
                 444444333333333333 PP

  == domain 7  score: -0.0 bits;  conditional E-value: 0.52
      HEAT_2  51 aaeaLgaigdpealpaLke 69 
                 +a+ +++i++pe l+aLk 
  KOO25325.1 499 VAQQASKIKSPELLDALKT 517
                 6677788888888888886 PP

>> Cnd1  non-SMC mitotic condensation complex subunit 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.8   0.0     4e-05      0.09      22      83 ..      75     142 ..      70     158 .. 0.72
   2 !   14.0   0.0   1.8e-05      0.04      23     146 ..     161     312 ..     142     325 .. 0.65

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 4e-05
        Cnd1  22 lvepLrkrLkDedpyVRktaaivvakL.....ilndmvkekgflselakll.eDenprVvanalaalt 83 
                 l++++r+ L+D  p+VR++a+++v +L      l++ v +  +l+   + + + ++p+ v  a ++l+
  KOO25325.1  75 LMPEMRSLLTDVAPTVRENAMLAVGRLcglsdKLHGQVADPTLLDATISTItSSSQPSLVHAAMFLLH 142
                 7899***********************98544444556666655554444436666666666666665 PP

  == domain 2  score: 14.0 bits;  conditional E-value: 1.8e-05
        Cnd1  23 vepLrkrLkDedpyVRktaaivvakLilnd.....mvkekgflselaklleDenprVvanalaalteiseksenaiynllpd.iisklsd......... 106
                 +  +++rL+D+d++ ++ a+ +++ + +++      v e g +  l  +l++++   + ++l++l  i++ ++ ++  l ++  +s  ++         
  KOO25325.1 161 LVAVCERLEDTDSQTKQAAVWCLCSIASHEaplasAVVEAGAVPLLILCLKEHSLPLRRLTLSCLGSIAKHEQVLAEVLHKEgALSAAVEflsspdmll 259
                 557899********************666644444799********************************98533222222112222222222233333 PP

        Cnd1 107 ..........alne.....csewgqitilefLlsyipkdkqeaeslveklcprlq 146
                           a  +     ++ew      ++L++ ++  + e+   +  l+++l 
  KOO25325.1 260 rrhacralacA--TqhhtgANEWVPAPARKLLVETMQVADPETLAFAATLAQQLA 312
                 33333333330..033344666666666666666666666666666666666665 PP

>> RICTOR_V  Rapamycin-insensitive companion of mTOR, domain 5
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   0.1   1.2e-05     0.027       3      65 ..     176     239 ..     174     243 .. 0.83
   2 ?    4.2   0.2     0.022        50       9      61 ..     348     401 ..     343     410 .. 0.76

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 1.2e-05
    RICTOR_V   3 lKaaLWaiGhigsselGie.lldeydivedivelaeespvlslRGtafyvLglissteeg.aeiL 65 
                 + aa W+++ i+s+e  ++  + e  +v+ ++  + + ++l lR   + +Lg i++ e+  ae+L
  KOO25325.1 176 KQAAVWCLCSIASHEAPLAsAVVEAGAVPLLIL-CLKEHSLPLRRLTLSCLGSIAKHEQVlAEVL 239
                 5799**********9999987888899999986.66788899**************998624555 PP

  == domain 2  score: 4.2 bits;  conditional E-value: 0.022
    RICTOR_V   9 aiGhigsselGie..lldeydivedivelaeespvlslRGtafyvLglissteeg 61 
                 aiGhi+   + ++   l+   ++e+i+ l  ++  + +  +++ +Lg +s+  e 
  KOO25325.1 348 AIGHICDGSSAAAvaALQL-GVLETIHALLASHAPVPVCVVLCQCLGAMSNADET 401
                 8****87666555315555.*******9998888888888888899999887764 PP

>> Adaptin_N  Adaptin N terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.1   0.8   5.6e-06     0.013     113     196 ..      73     158 ..      65     277 .. 0.69

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 5.6e-06
                 HHHHHHHHHHHT-SSHHHHHHHHHHHHHCCCCCHHC...CCCC.HHHHHHHCT.T-SSHHHHHHHHHHHHHH.HCCCCCCCHHHHHHHCC CS
   Adaptin_N 113 edlapaikkllkdrspyvrkkAalailklykkdpdl...lrkq.lveeikell.sdkdpgvvlaAvalleei.kkndrlllkllpklvrr 196
                   l+p++++ll+d  p vr +A la+ +l  ++ +l   + +  l++ +++ + s+++p++v aA  ll+   + +     +++++ v++
  KOO25325.1  73 FNLMPEMRSLLTDVAPTVRENAMLAVGRLCGLSDKLhgqVADPtLLDATISTItSSSQPSLVHAAMFLLHTAvRSSA----EVAHLAVEH 158
                 579*************************9988655422266667899999999455569999999999998832222....455555544 PP

>> V-ATPase_H_C  V-ATPase subunit H
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.2   0.0      0.45     1e+03      89     112 ..      78     101 ..      58     104 .. 0.73
   2 ?    4.0   0.1     0.023        52      47     113 ..     121     187 ..     109     190 .. 0.87
   3 ?    2.1   0.0     0.088     2e+02      64     110 ..     222     268 ..     202     274 .. 0.84
   4 ?   -1.5   0.0       1.1   2.5e+03      45      92 ..     287     333 ..     284     341 .. 0.70
   5 ?    0.4   0.0      0.29   6.5e+02      43      94 ..     368     419 ..     358     434 .. 0.79

  Alignments for each domain:
  == domain 1  score: -0.2 bits;  conditional E-value: 0.45
  V-ATPase_H_C  89 kimellehedeevkyeALkavqkl 112
                   ++ +ll++  ++v+ +A++av +l
    KOO25325.1  78 EMRSLLTDVAPTVRENAMLAVGRL 101
                   45578888899*********9876 PP

  == domain 2  score: 4.0 bits;  conditional E-value: 0.023
  V-ATPase_H_C  47 LiklleeskdktvlavalnDigelvkllpegkkvleklkaKekimellehedeevkyeALkavqkll 113
                    i+++++s++++ ++ a++ +   v+   e  ++  +++a   + e le++d++ k+ A  ++ ++ 
    KOO25325.1 121 TISTITSSSQPSLVHAAMFLLHTAVRSSAEVAHLAVEHNALVAVCERLEDTDSQTKQAAVWCLCSIA 187
                   45666678889999999999***************************************99987765 PP

  == domain 3  score: 2.1 bits;  conditional E-value: 0.088
  V-ATPase_H_C  64 lnDigelvkllpegkkvleklkaKekimellehedeevkyeALkavq 110
                   l+ +g+++k+ +   +vl+k +a +  +e+l+++d  ++++A +a+ 
    KOO25325.1 222 LSCLGSIAKHEQVLAEVLHKEGALSAAVEFLSSPDMLLRRHACRALA 268
                   556889999999999**************************998875 PP

  == domain 4  score: -1.5 bits;  conditional E-value: 1.1
  V-ATPase_H_C  45 kkLiklleeskdktvlavalnDigelvkllpegkkvleklkaKekime 92 
                   k L++++ + +d+++la a+   ++l+k+ ++  +  ++l+a   +++
    KOO25325.1 287 KLLVETM-QVADPETLAFAATLAQQLAKHSNSVASSFHDLGAVPLLVA 333
                   5567777.4678888888888888888888777777777766555555 PP

  == domain 5  score: 0.4 bits;  conditional E-value: 0.29
  V-ATPase_H_C  43 llkkLiklleeskdk.tvlavalnDigelvkllpegkkvleklkaKekimell 94 
                   +l+++++ll  s+ +  v++v+++ +g + +  ++  k +++ ++ + ++e +
    KOO25325.1 368 VLETIHALLA-SHAPvPVCVVLCQCLGAMSNADETVAKAIDQSGCLQLVLEAT 419
                   6778888995.455437889999999999999999999999999988888765 PP

>> HEAT_EZ  HEAT-like repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.2   0.1    0.0032       7.2      28      55 .]      74     101 ..      70     101 .. 0.91
   2 ?    8.1   0.0    0.0017       3.9       2      40 ..      89     128 ..      88     141 .. 0.65
   3 ?    5.5   0.0     0.011        25      34      52 ..     165     183 ..     156     186 .. 0.85
   4 ?    9.7   0.4   0.00053       1.2       3      55 .]     175     228 ..     173     228 .. 0.86
   5 ?   11.9   0.6   0.00011      0.25       2      53 ..     216     268 ..     215     269 .. 0.81
   6 ?   -0.9   1.1       1.1   2.5e+03       6      42 ..     344     380 ..     343     397 .. 0.63
   7 ?   -2.6   0.1       3.9   8.7e+03      29      37 ..     469     477 ..     465     484 .. 0.50
   8 ?   -3.5   0.0       7.6   1.7e+04      11      33 ..     497     518 ..     493     520 .. 0.68

  Alignments for each domain:
  == domain 1  score: 7.2 bits;  conditional E-value: 0.0032
     HEAT_EZ  28 eilpaLlalLnddsdeVRaaAagaLgnl 55 
                  ++p++ +lL+d  ++VR++A  a g+l
  KOO25325.1  74 NLMPEMRSLLTDVAPTVRENAMLAVGRL 101
                 69**********999*******999987 PP

  == domain 2  score: 8.1 bits;  conditional E-value: 0.0017
     HEAT_EZ   2 rvRraAawaLGrlaggepellqp..lvpeilpaLlalLndd 40 
                  vR++A +a+Grl+ g ++ l++  + p +l+a +++ +++
  KOO25325.1  89 TVRENAMLAVGRLC-GLSDKLHGqvADPTLLDATISTITSS 128
                 69**********99.55555555245556666666666555 PP

  == domain 3  score: 5.5 bits;  conditional E-value: 0.011
     HEAT_EZ  34 lalLnddsdeVRaaAagaL 52 
                 + +L+d ++ +++aA+++L
  KOO25325.1 165 CERLEDTDSQTKQAAVWCL 183
                 57899999999*******9 PP

  == domain 4  score: 9.7 bits;  conditional E-value: 0.00053
     HEAT_EZ   3 vRraAawaLGr.laggepellqp.lvpeilpaLlalLnddsdeVRaaAagaLgnl 55 
                  + aA+w+L + +a++e++l +  +   ++p+L+ +L+  s + R  ++ +Lg +
  KOO25325.1 175 TKQAAVWCL-CsIASHEAPLASAvVEAGAVPLLILCLKEHSLPLRRLTLSCLGSI 228
                 679******.7799999999888789999999999997766688********986 PP

  == domain 5  score: 11.9 bits;  conditional E-value: 0.00011
     HEAT_EZ   2 rvRraAawaLGrlaggepel.....lqplvpeilpaLlalLnddsd.eVRaaAagaLg 53 
                 ++Rr  +++LG++a +e  l      ++++++++ +L      ++d + R  A++aL+
  KOO25325.1 216 PLRRLTLSCLGSIAKHEQVLaevlhKEGALSAAVEFLS-----SPDmLLRRHACRALA 268
                 6899********77777777666445559999999999.....999455*******96 PP

  == domain 6  score: -0.9 bits;  conditional E-value: 1.1
     HEAT_EZ   6 aAawaLGr.....laggepellqplvpeilpaLlalLnddsd 42 
                 +Aa+a+G       a+  + l+ ++++ i ++L+     +++
  KOO25325.1 344 SAAAAIGHicdgsSAAAVAALQLGVLETIHALLA-----SHA 380
                 5888998755555444455555556666666666.....655 PP

  == domain 7  score: -2.6 bits;  conditional E-value: 3.9
     HEAT_EZ  29 ilpaLlalL 37 
                 il+aLl++L
  KOO25325.1 469 ILAALLKAL 477
                 344444333 PP

  == domain 8  score: -3.5 bits;  conditional E-value: 7.6
     HEAT_EZ  11 LGrlaggepellqplvpeilpaL 33 
                 L ++a++++   +p++ ++l+ L
  KOO25325.1 497 L-SVAQQASKIKSPELLDALKTL 518
                 3.366888888887777777666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (545 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       439  (0.0244855); expected 358.6 (0.02)
Passed bias filter:                      305  (0.0170115); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.52u 0.29s 00:00:00.81 Elapsed: 00:00:00.41
# Mc/sec: 3985.42
//
Query:       KOO25326.1  [L=178]
Description: hypothetical protein Ctob_010842 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (178 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       272  (0.015171); expected 358.6 (0.02)
Passed bias filter:                      244  (0.0136092); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.41u 0.24s 00:00:00.64 Elapsed: 00:00:00.41
# Mc/sec: 1294.52
//
Query:       KOO25327.1  [L=310]
Description: hypothetical protein Ctob_010841 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.7e-27   94.9   1.2    3.2e-15   56.3   0.1    2.5  2  DUF760     Protein of unknown function (DUF760)
    1.3e-13   51.1   0.0    3.5e-13   49.8   0.0    1.7  1  EF-hand_7  EF-hand domain pair
    1.6e-12   46.0   0.0    5.3e-05   22.5   0.0    2.5  2  EF-hand_1  EF hand
    1.1e-10   40.6   0.0    0.00018   21.2   0.0    2.9  2  EF-hand_6  EF-hand domain
    1.9e-08   33.5   0.0     0.0022   17.4   0.0    2.5  2  EF-hand_5  EF hand
    1.7e-07   31.0   0.0     0.0013   18.5   0.1    2.8  3  EF-hand_8  EF-hand domain pair
  ------ inclusion threshold ------
       0.18   12.1   0.0       0.61   10.4   0.0    1.9  2  DUF2442    Protein of unknown function (DUF2442)


Domain annotation for each model (and alignments):
>> DUF760  Protein of unknown function (DUF760)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.3   0.1   1.2e-18   3.2e-15      17      84 .]       4      70 ..       1      70 [. 0.95
   2 !   37.4   0.1   9.7e-13   2.5e-09       4      76 ..     226     300 ..     223     307 .. 0.90

  Alignments for each domain:
  == domain 1  score: 56.3 bits;  conditional E-value: 1.2e-18
      DUF760 17 lsephspevleaikehvsgllgslepslqfqtliqisrdklaqLlawsmllGYfLrgleqRleLeksl 84
                +   +spev +a+++ +++llgsl p+l+f+  +++++dkla L+++  ++GY+Lr++e+ + L+++l
  KOO25327.1  4 FFAGASPEVSQAMRDAITSLLGSL-PPLEFDARMTTTGDKLAALMLQLQMTGYMLRNAEYVMTLRRLL 70
                55679*******************.9**************************************9986 PP

  == domain 2  score: 37.4 bits;  conditional E-value: 9.7e-13
      DUF760   4 ryirslkpeevaelsephspevleaikehvsgllgsle..pslqfqtliqisrdklaqLlawsmllGYfLrgleq 76 
                  y++sl+++++++l++ +s++v+ a++ +v+ ll+  +   +l+ ++ +++++ kl+ L++ +++lGY Lr++e 
  KOO25327.1 226 AYVSSLSESQLKALTSGISEDVVGAMRLLVKYLLRDPSgeGELGKDQEVTMEQAKLQTLCLYQLVLGYKLREAEA 300
                 69*********************************97653455555***************************97 PP

>> EF-hand_7  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.8   0.0   1.4e-16   3.5e-13       5      69 ..      81     140 ..      78     142 .. 0.89

  Alignments for each domain:
  == domain 1  score: 49.8 bits;  conditional E-value: 1.4e-16
   EF-hand_7   5 keaFkelDtdgdgyldkeellrllrkifqgagegsklsdeelellfkefDtdkdGvisfdEFlkl 69 
                 +eaF  lD dg+gy+++ e+++llr+       + ++++ e+  ++  fDtd+dG++s++EF ++
  KOO25327.1  81 REAFARLDLDGSGYIEVGEVEELLRQV-----YKGDVPSVEISSFIALFDTDSDGRVSWEEFAHA 140
                 789***********************5.....444446679*********************986 PP

>> EF-hand_1  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.1   0.0   5.6e-08   0.00014       1      27 [.      79     105 ..      79     107 .. 0.93
   2 !   22.5   0.0   2.1e-08   5.3e-05       1      26 [.     116     141 ..     116     144 .. 0.89

  Alignments for each domain:
  == domain 1  score: 21.1 bits;  conditional E-value: 5.6e-08
                 HHHHHHHHHTTTSSSEEEHHHHHHHHH CS
   EF-hand_1   1 elkeiFrefDkDgdGkIdfeEfkellk 27 
                 e +e+F+ +D Dg+G+I+  E  ell+
  KOO25327.1  79 EYREAFARLDLDGSGYIEVGEVEELLR 105
                 689*******************99998 PP

  == domain 2  score: 22.5 bits;  conditional E-value: 2.1e-08
                 HHHHHHHHHTTTSSSEEEHHHHHHHH CS
   EF-hand_1   1 elkeiFrefDkDgdGkIdfeEfkell 26 
                 e+  ++++fD+D dG++++eEf ++l
  KOO25327.1 116 EISSFIALFDTDSDGRVSWEEFAHAL 141
                 5678899****************998 PP

>> EF-hand_6  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.2   0.0     7e-08   0.00018       1      28 [.      79     106 ..      79     112 .. 0.90
   2 !   16.3   0.0   2.5e-06    0.0064       7      27 ..     122     142 ..     116     146 .. 0.87

  Alignments for each domain:
  == domain 1  score: 21.2 bits;  conditional E-value: 7e-08
   EF-hand_6   1 elreaFklfDkdgdGkidaeElrkalrk 28 
                 e reaF  +D dg+G+i   E+  +lr+
  KOO25327.1  79 EYREAFARLDLDGSGYIEVGEVEELLRQ 106
                 579***********************97 PP

  == domain 2  score: 16.3 bits;  conditional E-value: 2.5e-06
   EF-hand_6   7 klfDkdgdGkidaeElrkalr 27 
                  lfD+d dG +++eE+ +al 
  KOO25327.1 122 ALFDTDSDGRVSWEEFAHALG 142
                 79****************996 PP

>> EF-hand_5  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.6   0.0   1.4e-05     0.036       3      24 ..      82     103 ..      81     104 .. 0.86
   2 !   17.4   0.0   8.8e-07    0.0022       7      22 ..     123     138 ..     119     141 .. 0.89

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 1.4e-05
                 HHHHHH-SS-SSCE-HHHHHHH CS
   EF-hand_5   3 dtFqaiDlNgDGkIskeELktl 24 
                 ++F ++Dl+g+G+I + E ++l
  KOO25327.1  82 EAFARLDLDGSGYIEVGEVEEL 103
                 56*************9997776 PP

  == domain 2  score: 17.4 bits;  conditional E-value: 8.8e-07
                 HH-SS-SSCE-HHHHH CS
   EF-hand_5   7 aiDlNgDGkIskeELk 22 
                  +D++ DG++s eE+ 
  KOO25327.1 123 LFDTDSDGRVSWEEFA 138
                 69************95 PP

>> EF-hand_8  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.0       3.2   8.2e+03      10      29 ..      16      33 ..      14      34 .. 0.69
   2 !    9.5   0.0   0.00034      0.88      13      44 ..      65      96 ..      61     105 .. 0.85
   3 !   18.5   0.1   5.1e-07    0.0013      23      49 ..     112     138 ..      99     141 .. 0.79

  Alignments for each domain:
  == domain 1  score: -3.2 bits;  conditional E-value: 3.2
   EF-hand_8 10 lrril.rilglkkglseeevd 29
                +r+++ ++lg   +l + e+d
  KOO25327.1 16 MRDAItSLLG---SLPPLEFD 33
                7888877766...57777766 PP

  == domain 2  score: 9.5 bits;  conditional E-value: 0.00034
   EF-hand_8 13 il.rilglkkglseeevdilfrefDtdgdGkis 44
                +l r+l+lk   s+ e ++ f ++D+dg+G+i 
  KOO25327.1 65 TLrRLLQLKT-RSAAEYREAFARLDLDGSGYIE 96
                5656778884.999*****************95 PP

  == domain 3  score: 18.5 bits;  conditional E-value: 5.1e-07
   EF-hand_8  23 lseeevdilfrefDtdgdGkisfeEFc 49 
                 +   e+ + + +fDtd dG++s+eEF 
  KOO25327.1 112 VPSVEISSFIALFDTDSDGRVSWEEFA 138
                 555688888999**************6 PP

>> DUF2442  Protein of unknown function (DUF2442)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.6   0.0       5.9   1.5e+04      37      56 ..      76      93 ..      63      94 .. 0.58
   2 ?   10.4   0.0   0.00024      0.61      11      48 ..     173     210 ..     166     222 .. 0.82

  Alignments for each domain:
  == domain 1  score: -3.6 bits;  conditional E-value: 5.9
                -TTTT......TS-EE-TTS CS
     DUF2442 37 tfeqlkdkelFaqvevspgg 56
                + ++    e Fa+  ++++g
  KOO25327.1 76 SAAEY--REAFARLDLDGSG 93
                44444..5677777776665 PP

  == domain 2  score: 10.4 bits;  conditional E-value: 0.00024
                 EEEEEETT--EEEE-TTTS.STTTT--TTTT......T CS
     DUF2442  11 klyvyfddGrellvdlswllprlenatfeqlkdkelFa 48 
                 +++v +ddG e++ d+++++ +l+    + ++d + ++
  KOO25327.1 173 TVTVSLDDGTEVKMDANAYMDQLKSEAEALRRDLRNME 210
                 899****************9888888888888877774 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (310 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1169  (0.0652016); expected 358.6 (0.02)
Passed bias filter:                      865  (0.0482459); expected 358.6 (0.02)
Passed Vit filter:                        98  (0.005466); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.53u 0.27s 00:00:00.80 Elapsed: 00:00:00.41
# Mc/sec: 2252.81
//
Query:       KOO25328.1  [L=453]
Description: hypothetical protein Ctob_004199 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (453 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       581  (0.0324056); expected 358.6 (0.02)
Passed bias filter:                      268  (0.0149478); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.49u 0.25s 00:00:00.74 Elapsed: 00:00:00.42
# Mc/sec: 3254.95
//
Query:       KOO25329.1  [L=208]
Description: fad NAD -binding oxidoreductase-like protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
      4e-09   36.2   0.6    5.9e-09   35.6   0.6    1.2  1  FAD_binding_3   FAD binding domain
    9.3e-07   28.7   0.1    1.5e-06   28.1   0.1    1.3  1  DAO             FAD dependent oxidoreductase
    1.1e-06   27.6   0.1    1.5e-06   27.2   0.1    1.1  1  HI0933_like     HI0933-like protein
    1.2e-06   28.0   0.0    3.1e-06   26.6   0.1    1.6  2  Pyr_redox_2     Pyridine nucleotide-disulphide oxidoreductase
    3.3e-06   26.5   0.5    5.1e-06   25.8   0.2    1.4  2  FAD_binding_2   FAD binding domain
    7.9e-06   26.0   0.1    7.9e-06   26.0   0.1    2.3  2  NAD_binding_8   NAD(P)-binding Rossmann-like domain
      3e-05   23.4   0.0    4.4e-05   22.9   0.0    1.1  1  Pyr_redox_3     Pyridine nucleotide-disulphide oxidoreductase
    3.5e-05   23.2   0.2      5e-05   22.7   0.2    1.1  1  Thi4            Thi4 family
    6.2e-05   22.5   0.5    9.3e-05   21.9   0.5    1.3  1  FAD_oxidored    FAD dependent oxidoreductase
    9.5e-05   22.9   0.2    0.00018   22.0   0.2    1.5  1  Pyr_redox       Pyridine nucleotide-disulphide oxidoreductase
    0.00012   21.4   0.3    0.00015   20.9   0.3    1.1  1  GIDA            Glucose inhibited division protein A
    0.00048   19.8   0.1    0.00075   19.2   0.1    1.3  1  ApbA            Ketopantoate reductase PanE/ApbA
    0.00068   19.2   0.0    0.00098   18.7   0.0    1.2  1  Glu_dehyd_C     Glucose dehydrogenase C-terminus
      0.002   17.4   0.7     0.0031   16.9   0.7    1.2  1  AlaDh_PNT_C     Alanine dehydrogenase/PNT, C-terminal domain
     0.0066   15.8   0.8     0.0095   15.3   0.8    1.1  1  ThiF            ThiF family
  ------ inclusion threshold ------
      0.017   14.2   0.1      0.031   13.3   0.1    1.4  1  Lycopene_cycl   Lycopene cyclase protein
      0.041   14.3   0.1      0.078   13.4   0.1    1.5  1  NAD_binding_7   Putative NAD(P)-binding
      0.051   12.4   0.1      0.068   12.0   0.1    1.1  1  Trp_halogenase  Tryptophan halogenase
      0.068   13.0   0.1       0.12   12.2   0.1    1.4  1  3HCDH_N         3-hydroxyacyl-CoA dehydrogenase, NAD binding 
      0.072   12.4   0.0       0.12   11.6   0.0    1.3  1  Amino_oxidase   Flavin containing amine oxidoreductase


Domain annotation for each model (and alignments):
>> FAD_binding_3  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.6   0.6   6.6e-12   5.9e-09       3      42 ..     140     179 ..     138     186 .. 0.90

  Alignments for each domain:
  == domain 1  score: 35.6 bits;  conditional E-value: 6.6e-12
                    EEEEE--SHHHHHHHHHHHHTTHHEEEEESSSSSCCSSS- CS
  FAD_binding_3   3 dVlIVGaGpaGlmlallLseaGvrvvlvekrsttvvlpra 42 
                     Vl+VGaGp+Gl +al L++aGvrv+l+e+ +   + +r+
     KOO25329.1 140 HVLVVGAGPCGLFAALTLARAGVRVTLLERGKPVEERGRS 179
                    7*****************************9888887776 PP

>> DAO  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.1   0.1   1.7e-09   1.5e-06       1      42 [.     140     181 ..     140     197 .. 0.79

  Alignments for each domain:
  == domain 1  score: 28.1 bits;  conditional E-value: 1.7e-09
                 EEEEECTSHHHHHHHHHHHHTT..EEEEESSSSTTSSGGGSSEE CS
         DAO   1 dvviiGGGiiGlstAyeLarrg..VtllekgdiagsgaSgrnsg 42 
                 +v+++G+G  Gl++A+ Lar+g  Vtlle+g  +  +  gr+ g
  KOO25329.1 140 HVLVVGAGPCGLFAALTLARAGvrVTLLERG-KPV-EERGRSIG 181
                 79*****************************.555.45555544 PP

>> HI0933_like  HI0933-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.2   0.1   1.7e-09   1.5e-06       2      35 ..     140     173 ..     139     181 .. 0.91

  Alignments for each domain:
  == domain 1  score: 27.2 bits;  conditional E-value: 1.7e-09
                  SEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSS CS
  HI0933_like   2 dviviGgGaAGlmaAisaakrgkrVlllekakkl 35 
                  +v+v+G+G+ Gl+aA+++a++g rV+lle++k +
   KOO25329.1 140 HVLVVGAGPCGLFAALTLARAGVRVTLLERGKPV 173
                  799**************************99865 PP

>> Pyr_redox_2  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.0       1.3   1.2e+03     161     192 ..       6      37 ..       3      40 .. 0.74
   2 !   26.6   0.1   3.4e-09   3.1e-06     143     176 ..     139     172 ..      93     188 .. 0.72

  Alignments for each domain:
  == domain 1  score: -1.6 bits;  conditional E-value: 1.3
                  HHHHT-EEEEEESSSSSSTTS-HHHHHHHHHH CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2 161 laklgkevtlveardrllraldkelsaaleea 192
                  ++ +g+ev+++e ++  l ++ ++l +a++++
   KOO25329.1   6 WRLFGVEVPVLESGPDNLLNVSSALHRAVAQQ 37 
                  67789*******99998866666666666555 PP

  == domain 2  score: 26.6 bits;  conditional E-value: 3.4e-09
                  SEEEEES-SHHHHHHHHHHHHHT-EEEEEESSSS CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2 143 krivvvGgGyiGvElAaalaklgkevtlveardr 176
                   +++vvG+G++G+  A +la++g++vtl+e+++ 
   KOO25329.1 139 SHVLVVGAGPCGLFAALTLARAGVRVTLLERGKP 172
                  5556666666666666666666666666665544 PP

>> FAD_binding_2  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.0       3.5   3.2e+03     109     123 ..      55      76 ..      32      94 .. 0.67
   2 !   25.8   0.2   5.7e-09   5.1e-06       2      33 ..     141     172 ..     140     179 .. 0.94

  Alignments for each domain:
  == domain 1  score: -3.1 bits;  conditional E-value: 3.5
                    SSB-EEE-TT-SST.......E CS
  FAD_binding_2 109 gpvdvrelGglsat.......a 123
                    + +d+r++Gg + +       +
     KOO25329.1  55 QSLDARPRGGRRGRsgsgdsdR 76 
                    4778888888888744444442 PP

  == domain 2  score: 25.8 bits;  conditional E-value: 5.7e-09
                    EEEE--SHHHHHHHHHHHHTTT-EEEEESSSG CS
  FAD_binding_2   2 viViGsGlAGLaAAleaaeaGlkvavvekeqe 33 
                    v+V+G+G  GL AAl++a+aG +v+++e +++
     KOO25329.1 141 VLVVGAGPCGLFAALTLARAGVRVTLLERGKP 172
                    9***************************9987 PP

>> NAD_binding_8  NAD(P)-binding Rossmann-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.9       9.6   8.6e+03       4      13 ..     130     139 ..     126     141 .. 0.68
   2 !   26.0   0.1   8.8e-09   7.9e-06       1      28 [.     143     170 ..     143     173 .. 0.96

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 9.6
                    -SHHHHHHHH CS
  NAD_binding_8   4 aGlsGlvaAy 13 
                    +G+++++aA+
     KOO25329.1 130 GGAAASSAAS 139
                    5666666664 PP

  == domain 2  score: 26.0 bits;  conditional E-value: 8.8e-09
                    EE--SHHHHHHHHHHHCCTEEEEEE-SS CS
  NAD_binding_8   1 IvGaGlsGlvaAylLakagfdvlllekr 28 
                    +vGaG  Gl aA +La+ag++v+lle++
     KOO25329.1 143 VVGAGPCGLFAALTLARAGVRVTLLERG 170
                    8*************************97 PP

>> Pyr_redox_3  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.9   0.0   4.9e-08   4.4e-05       1      34 [.     142     174 ..     142     178 .. 0.93

  Alignments for each domain:
  == domain 1  score: 22.9 bits;  conditional E-value: 4.9e-08
  Pyr_redox_3   1 iIiGaGPaGlaaaielkkagledylilEkgnign 34 
                  +++GaGP+Gl aa++l +ag+ +++ lE+g+ ++
   KOO25329.1 142 LVVGAGPCGLFAALTLARAGV-RVTLLERGKPVE 174
                  69*******************.8*******9876 PP

>> Thi4  Thi4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.7   0.2   5.5e-08     5e-05      16      49 ..     137     169 ..     129     182 .. 0.92

  Alignments for each domain:
  == domain 1  score: 22.7 bits;  conditional E-value: 5.5e-08
                 TEEEEEEE--SHHHHHHHHHHHHCTTS-EEEEES CS
        Thi4  16 aesDvvivGaGssGLtaayylakkpdlkvailer 49 
                 a s v++vGaG++GL aa +la++ +++v++ler
  KOO25329.1 137 AASHVLVVGAGPCGLFAALTLARA-GVRVTLLER 169
                 6799********************.********8 PP

>> FAD_oxidored  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.9   0.5     1e-07   9.3e-05       2      31 ..     141     170 ..     140     173 .. 0.95

  Alignments for each domain:
  == domain 1  score: 21.9 bits;  conditional E-value: 1e-07
  FAD_oxidored   2 vvVvGGgpaGvaAAiaAaraGakvlLveer 31 
                   v+VvG+gp G+ AA++ araG +v L+e+ 
    KOO25329.1 141 VLVVGAGPCGLFAALTLARAGVRVTLLERG 170
                   9***************************97 PP

>> Pyr_redox  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.0   0.2     2e-07   0.00018       1      34 [.     140     173 ..     140     190 .. 0.87

  Alignments for each domain:
  == domain 1  score: 22.0 bits;  conditional E-value: 2e-07
                 EEEEECSSHHHHHHHHHHHHTTSEEEEEESSSSS CS
   Pyr_redox   1 kvvvvGgGyiglElAgalaelgkkVtvversdkl 34 
                 +v+vvG+G  gl +A +la+ g +Vt++er++ +
  KOO25329.1 140 HVLVVGAGPCGLFAALTLARAGVRVTLLERGKPV 173
                 79****************************9766 PP

>> GIDA  Glucose inhibited division protein A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.9   0.3   1.7e-07   0.00015       2      28 ..     141     167 ..     140     187 .. 0.84

  Alignments for each domain:
  == domain 1  score: 20.9 bits;  conditional E-value: 1.7e-07
                 EEEE-SSHHHHHHHHHHHHTT--EEEE CS
        GIDA   2 viViGgGhAGceAAlaaarlGakvlLi 28 
                 v V+G+G  G+ AAl++ar+G++v+L+
  KOO25329.1 141 VLVVGAGPCGLFAALTLARAGVRVTLL 167
                 89************************9 PP

>> ApbA  Ketopantoate reductase PanE/ApbA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.2   0.1   8.3e-07   0.00075       1      35 [.     141     175 ..     141     194 .. 0.85

  Alignments for each domain:
  == domain 1  score: 19.2 bits;  conditional E-value: 8.3e-07
                 EEEES-SHHHHHHHHHHHHHTHCEEEE-SCHHHHH CS
        ApbA   1 iailGaGaiGsllaakLakagadvtlilrsrrlea 35 
                 ++++GaG  G + a +La+ag  vtl+ r++ +e+
  KOO25329.1 141 VLVVGAGPCGLFAALTLARAGVRVTLLERGKPVEE 175
                 68****************************96665 PP

>> Glu_dehyd_C  Glucose dehydrogenase C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.7   0.0   1.1e-06   0.00098      14      65 ..     121     169 ..     113     184 .. 0.83

  Alignments for each domain:
  == domain 1  score: 18.7 bits;  conditional E-value: 1.1e-06
  Glu_dehyd_C  14 eKaielaeasrsafewepesalvlGaGslGLLalalleaeerglervyvlgr 65 
                  + a+++a a ++a++   + +lv+GaG+ GL a+ +l+  + g+ rv+ l+r
   KOO25329.1 121 NQALDKASAGGAAASSAASHVLVVGAGPCGLFAALTLA--RAGV-RVTLLER 169
                  579******************************77776..4566.5878776 PP

>> AlaDh_PNT_C  Alanine dehydrogenase/PNT, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   0.7   3.4e-06    0.0031      24      72 ..     134     182 ..     122     191 .. 0.83

  Alignments for each domain:
  == domain 1  score: 16.9 bits;  conditional E-value: 3.4e-06
                  TCB---EEEEESTSHHHHHHHHHHHHTT-EEEEEESSHHHHHHHHHTTT CS
  AlaDh_PNT_C  24 pgvepakvlviGgGvaGlqAiatakglgakVtvlDvrparleqleslga 72 
                     ++++vlv+G+G  Gl A+ t ++ g +Vt+l+  + + e+ +s+ga
   KOO25329.1 134 ASSAASHVLVVGAGPCGLFAALTLARAGVRVTLLERGKPVEERGRSIGA 182
                  3345789****************************99999888777665 PP

>> ThiF  ThiF family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.8   1.1e-05    0.0095      17      43 ..     137     163 ..     123     168 .. 0.90

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 1.1e-05
                 HTSEEEEE--SHHHHHHHHHHHHHTTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        ThiF  17 rdskvllvGaGglGsellknLalsGvg 43 
                 ++s+vl+vGaG  G +++ +La++Gv+
  KOO25329.1 137 AASHVLVVGAGPCGLFAALTLARAGVR 163
                 569**********************97 PP

>> Lycopene_cycl  Lycopene cyclase protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.1   3.4e-05     0.031       2      34 ..     141     171 ..     140     178 .. 0.92

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 3.4e-05
  Lycopene_cycl   2 vvviGaGpAglslAarlteakpglkvvlieasp 34 
                    v+v+GaGp gl  A  l  a++g++v+l+e ++
     KOO25329.1 141 VLVVGAGPCGLFAALTL--ARAGVRVTLLERGK 171
                    89***************..**********9886 PP

>> NAD_binding_7  Putative NAD(P)-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.1   8.7e-05     0.078       8      39 ..     139     170 ..     133     192 .. 0.86

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 8.7e-05
  NAD_binding_7   8 kkvlvvGgGevAarkvrklleagakvtvvape 39 
                     +vlvvG+G+ ++  + +l++ag +vt++   
     KOO25329.1 139 SHVLVVGAGPCGLFAALTLARAGVRVTLLERG 170
                    69*************************98765 PP

>> Trp_halogenase  Tryptophan halogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.1   7.6e-05     0.068       2      33 ..     141     169 ..     140     180 .. 0.93

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 7.6e-05
                     EEEE--SHHHHHHHHHHHHHTTTSSEEEEEE- CS
  Trp_halogenase   2 ivivGGGtaGwlaAaalakalkgklevtlves 33 
                     +++vG+G+ G  aA +la+a+   ++vtl+e 
      KOO25329.1 141 VLVVGAGPCGLFAALTLARAG---VRVTLLER 169
                     89*******************...99***996 PP

>> 3HCDH_N  3-hydroxyacyl-CoA dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.1   0.00014      0.12       2      37 ..     141     176 ..     140     188 .. 0.86

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 0.00014
                 EEEE--SCCHHHHHHHHHHTT-EEEEE-S-HHHHHH CS
     3HCDH_N   2 vaviGaGtmGagiaavfasagleVvlvdiseealek 37 
                 v v+GaG  G   a  +a+ag++V+l+++ +   e+
  KOO25329.1 141 VLVVGAGPCGLFAALTLARAGVRVTLLERGKPVEER 176
                 88*************************987655555 PP

>> Amino_oxidase  Flavin containing amine oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   0.00013      0.12       2      23 ..     149     170 ..     148     173 .. 0.92

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 0.00013
                    HHHHHHHHHHHTTEEEEEEESS CS
  Amino_oxidase   2 aGLaaArqLlsaGfdVtvlEar 23 
                     GL aA +L++aG++Vt+lE  
     KOO25329.1 149 CGLFAALTLARAGVRVTLLERG 170
                    5*******************75 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (208 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       460  (0.0256568); expected 358.6 (0.02)
Passed bias filter:                      384  (0.0214178); expected 358.6 (0.02)
Passed Vit filter:                        49  (0.002733); expected 17.9 (0.001)
Passed Fwd filter:                        20  (0.00111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              20  [number of targets reported over threshold]
# CPU time: 0.44u 0.23s 00:00:00.67 Elapsed: 00:00:00.40
# Mc/sec: 1551.63
//
Query:       KOO25330.1  [L=325]
Description: hypothetical protein Ctob_004205 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (325 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       308  (0.0171789); expected 358.6 (0.02)
Passed bias filter:                      214  (0.011936); expected 358.6 (0.02)
Passed Vit filter:                         8  (0.000446204); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.43u 0.23s 00:00:00.66 Elapsed: 00:00:00.39
# Mc/sec: 2472.28
//
Query:       KOO25331.1  [L=406]
Description: wd domain-containing protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    7.7e-70  229.1  10.7    4.6e-09   36.8   0.0    8.1  8  WD40           WD domain, G-beta repeat
    7.3e-17   61.5   0.5     0.0048   17.2   0.0    6.7  8  ANAPC4_WD40    Anaphase-promoting complex subunit 4 WD40 doma
    1.3e-09   37.8   0.5      0.033   13.5   0.1    5.5  4  WD40_like      WD40-like domain
    3.9e-09   35.9   9.0      0.014   14.4   1.3    6.0  5  Ge1_WD40       WD40 region of Ge1, enhancer of mRNA-decapping
    3.8e-07   30.2   1.3       0.13   12.1   0.0    3.3  3  eIF2A          Eukaryotic translation initiation factor eIF2A
    8.1e-06   24.8  11.5       0.43    9.2   0.0    6.3  7  Nup160         Nucleoporin Nup120/160
    5.9e-05   23.0   0.5      0.027   14.4   0.0    4.0  4  WD40_3         WD domain, G-beta repeat
     0.0026   16.5   0.1        1.3    7.7   0.0    3.4  3  Nucleoporin_N  Nup133 N terminal like
  ------ inclusion threshold ------
       0.15   11.9   0.1      1e+02    2.8   0.0    3.9  4  YabP           YabP family
       0.37   11.4   3.1        3.9    8.1   0.2    2.8  3  DUF5114        Domain of unknown function (DUF5114)
       0.86    9.7  10.0        1.3    9.1   0.5    4.0  4  DUF5570        Family of unknown function (DUF5570)


Domain annotation for each model (and alignments):
>> WD40  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.2   0.0   1.2e-08     2e-05       4      38 .]      75     110 ..      72     110 .. 0.92
   2 !   26.2   0.0     6e-09   9.8e-06       2      38 .]     115     153 ..     114     153 .. 0.91
   3 !   36.8   0.0   2.8e-12   4.6e-09       1      38 []     157     195 ..     157     195 .. 0.95
   4 !   20.6   0.1   3.6e-07   0.00059       4      38 .]     202     237 ..     199     237 .. 0.90
   5 !   25.9   0.1   7.9e-09   1.3e-05       1      38 []     241     279 ..     241     279 .. 0.95
   6 !   29.9   0.0     4e-10   6.6e-07       1      38 []     283     321 ..     283     321 .. 0.94
   7 !   31.9   0.0   9.7e-11   1.6e-07       1      38 []     325     363 ..     325     363 .. 0.93
   8 !   32.5   0.0   6.3e-11     1e-07       1      38 []     367     405 ..     367     405 .. 0.94

  Alignments for each domain:
  == domain 1  score: 25.2 bits;  conditional E-value: 1.2e-08
                 EEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40   4 lrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 
                  ++l++H  + t +af+++g+ +++Gs+D+t+++W+
  KOO25331.1  75 FKILRAHiLPLTNCAFNKSGDRFITGSYDRTCKVWN 110
                 57899**8889************************8 PP

  == domain 2  score: 26.2 bits;  conditional E-value: 6e-09
                 EEEEEEESSSS.EEEEE.EETTSSEEEEEETTSEEEEEE CS
        WD40   2 qclrtltGHss.vtsla.fspdgawlasGsdDgtvriWd 38 
                 + l tl+GH++ v+++a ++p g+ +++Gs D+t +iWd
  KOO25331.1 115 EELLTLEGHKNvVYAIAfNNPFGDKVVTGSFDKTAKIWD 153
                 67899****6647*************************9 PP

  == domain 3  score: 36.8 bits;  conditional E-value: 2.8e-12
                 TEEEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40   1 gqclrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 
                 g++l+tl+GH + + +l+f+p g+ +a+Gs+D t ++Wd
  KOO25331.1 157 GELLQTLRGHtTEIVCLSFDPTGTVVATGSMDSTAKLWD 195
                 6789******77799***********************9 PP

  == domain 4  score: 20.6 bits;  conditional E-value: 3.6e-07
                 EEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40   4 lrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 
                 + tl GH   + sl f+  g+++++Gs D++ ++Wd
  KOO25331.1 202 MCTLLGHtAEIVSLNFNTAGTMIITGSFDHSTKVWD 237
                 67888**66699***********************9 PP

  == domain 5  score: 25.9 bits;  conditional E-value: 7.9e-09
                 TEEEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40   1 gqclrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 
                 g cl+tl GH + ++s +f+  g + +sGs D+t+++W+
  KOO25331.1 241 GACLQTLAGHrGEISSTQFDFTGELCISGSIDRTCKVWN 279
                 57********888*************************8 PP

  == domain 6  score: 29.9 bits;  conditional E-value: 4e-10
                 TEEEEEEESSSS.EEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40   1 gqclrtltGHss.vtslafspdgawlasGsdDgtvriWd 38 
                 g+cl+tl+GH++ + ++af+  g+ l+++s Dgt r+++
  KOO25331.1 283 GECLHTLRGHNDeILDVAFNTAGTRLVTASADGTARVYN 321
                 69********666************************97 PP

  == domain 7  score: 31.9 bits;  conditional E-value: 9.7e-11
                 TEEEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40   1 gqclrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 
                 g c+ +l GH + ++ ++f+p g+ ++++s D+t+r+Wd
  KOO25331.1 325 GACQAILIGHeGEISKVSFNPQGNKIITASSDRTCRVWD 363
                 579*******888*************99988*******9 PP

  == domain 8  score: 32.5 bits;  conditional E-value: 6.3e-11
                 TEEEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40   1 gqclrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 
                 g+c+++l+GH + + s af+ +g+ +++Gs+D+t+riW+
  KOO25331.1 367 GDCMQVLEGHtDEIFSAAFNYEGDTIITGSKDNTCRIWK 405
                 68********666*************************6 PP

>> ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.4   0.0       0.5   8.2e+02      42      89 ..      86     132 ..      80     135 .. 0.83
   2 !    8.5   0.0    0.0015       2.4      32      89 ..     111     175 ..     103     176 .. 0.80
   3 !   13.6   0.0   3.8e-05     0.062      33      90 ..     162     218 ..     145     220 .. 0.81
   4 !    8.2   0.0    0.0019         3      37      86 ..     208     256 ..     204     262 .. 0.89
   5 !   12.9   0.0   6.2e-05       0.1      28      89 ..     234     301 ..     231     304 .. 0.84
   6 !   10.4   0.0   0.00038      0.62      29      72 ..     277     327 ..     276     331 .. 0.83
   7 !   17.2   0.0   2.9e-06    0.0048      37      84 ..     334     380 ..     328     388 .. 0.89
   8 ?    2.1   0.0      0.15   2.5e+02      37      65 ..     376     404 ..     372     406 .] 0.87

  Alignments for each domain:
  == domain 1  score: 0.4 bits;  conditional E-value: 0.5
  ANAPC4_WD40  42 rsLaWkpdgklLavaysdgevrlldaesgkvvhslsvksekavtclgW 89 
                  ++ a++++g  +  +  d ++++ +  +g+ + +l+ +++  v  + +
   KOO25331.1  86 TNCAFNKSGDRFITGSYDRTCKVWNTLTGEELLTLEGHKN-VVYAIAF 132
                  567899999999*****************99999988877.4666655 PP

  == domain 2  score: 8.5 bits;  conditional E-value: 0.0015
  ANAPC4_WD40  32 l.......eedkedsevrsLaWk.pdgklLavaysdgevrlldaesgkvvhslsvksekavtclgW 89 
                  +       + +++++ v ++a++ p g   + +  d + ++ d+++g+++++l+ ++++ ++cl++
   KOO25331.1 111 TltgeellTLEGHKNVVYAIAFNnPFGDKVVTGSFDKTAKIWDSSTGELLQTLRGHTTE-IVCLSF 175
                  44444444447888889999996367999999**********************99996.***987 PP

  == domain 3  score: 13.6 bits;  conditional E-value: 3.8e-05
  ANAPC4_WD40  33 eedkedsevrsLaWkpdgklLavaysdgevrlldaesgkvvhslsvksekavtclgWg 90 
                  +  ++  e+ +L++ p g++ a +  d++ +l d+ +g+ + +l  ++  ++++l+++
   KOO25331.1 162 TLRGHTTEIVCLSFDPTGTVVATGSMDSTAKLWDVAHGTEMCTLLGHTA-EIVSLNFN 218
                  45678899******************************99999977777.48888876 PP

  == domain 4  score: 8.2 bits;  conditional E-value: 0.0019
  ANAPC4_WD40  37 edsevrsLaWkpdgklLavaysdgevrlldaesgkvvhslsvksekavtc 86 
                  +  e+ sL+++  g+++  +  d + ++ d ++g ++++l  ++ + +++
   KOO25331.1 208 HTAEIVSLNFNTAGTMIITGSFDHSTKVWDCSTGACLQTLAGHRGE-ISS 256
                  56899**********************************9988885.665 PP

  == domain 5  score: 12.9 bits;  conditional E-value: 6.2e-05
  ANAPC4_WD40  28 rvwtl.......eedkedsevrsLaWkpdgklLavaysdgevrlldaesgkvvhslsvksekavtclgW 89 
                  +vw+        + +++ +e++s ++   g+l   +  d ++++ ++ sg+++h+l+ ++++ +  + +
   KOO25331.1 234 KVWDCstgaclqTLAGHRGEISSTQFDFTGELCISGSIDRTCKVWNVRSGECLHTLRGHNDE-ILDVAF 301
                  5666666666665678899*************************************999995.776665 PP

  == domain 6  score: 10.4 bits;  conditional E-value: 0.00038
  ANAPC4_WD40  29 vwtl.......eedkedsevrsLaWkpdgklLavaysdgevrlldaesgkv 72 
                  vw++       +  +++ e+ ++a++  g+ L+ a +dg+ r+++  +g +
   KOO25331.1 277 VWNVrsgeclhTLRGHNDEILDVAFNTAGTRLVTASADGTARVYNTTTGAC 327
                  555555555555578899***************************999875 PP

  == domain 7  score: 17.2 bits;  conditional E-value: 2.9e-06
  ANAPC4_WD40  37 edsevrsLaWkpdgklLavaysdgevrlldaesgkvvhslsvksekav 84 
                  +++e+++++++p+g+ +  a sd ++r+ d+esg++++ l+ ++++ +
   KOO25331.1 334 HEGEISKVSFNPQGNKIITASSDRTCRVWDVESGDCMQVLEGHTDE-I 380
                  6789*********************************999988875.5 PP

  == domain 8  score: 2.1 bits;  conditional E-value: 0.15
  ANAPC4_WD40  37 edsevrsLaWkpdgklLavaysdgevrll 65 
                  +  e+ s a++ +g  +  + +d+++r+ 
   KOO25331.1 376 HTDEIFSAAFNYEGDTIITGSKDNTCRIW 404
                  567888999******************96 PP

>> WD40_like  WD40-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.6   0.0     0.084   1.4e+02       7      45 ..      89     127 ..      84     162 .. 0.82
   2 ?   -0.8   0.0      0.47   7.7e+02       1      34 [.     168     201 ..     168     206 .. 0.86
   3 !   13.5   0.1     2e-05     0.033       2     127 ..     211     341 ..     210     341 .. 0.84
   4 !   12.7   0.1   3.6e-05     0.059       2      62 ..     337     398 ..     336     401 .. 0.86

  Alignments for each domain:
  == domain 1  score: 1.6 bits;  conditional E-value: 0.084
   WD40_like   7 diskkgslilyGgkddkctvlkleslesvsivesfedSv 45 
                  ++k g+ ++ G+ d +c+v ++ ++e+   +e+ ++ v
  KOO25331.1  89 AFNKSGDRFITGSYDRTCKVWNTLTGEELLTLEGHKNVV 127
                 689999999************999999999888877654 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 0.47
   WD40_like   1 eeiYsidiskkgslilyGgkddkctvlklesles 34 
                 +ei  + +++ g++++ G+ d ++++ ++  +++
  KOO25331.1 168 TEIVCLSFDPTGTVVATGSMDSTAKLWDVAHGTE 201
                 57888899999***************99988776 PP

  == domain 3  score: 13.5 bits;  conditional E-value: 2e-05
   WD40_like   2 eiYsidiskkgslilyGgkddkctvlkleslesvsivesfedSvifvkl.ldddlilvvtlDGtillslleneeeven.ekieedistv..kviddkll 96 
                 ei s++++  g++i+ G+ d+  +v +  ++   + +++ +  +  +++   ++l + +++D t     ++ +e  ++ +  +++i  v  ++ + +l+
  KOO25331.1 211 EIVSLNFNTAGTMIITGSFDHSTKVWDCSTGACLQTLAGHRGEISSTQFdFTGELCISGSIDRTCKVWNVRSGECLHTlRGHNDEILDVafNTAGTRLV 309
                 899999**************************9999999999999999867899999999**9999999999995554266788886652256678899 PP

   WD40_like  97 iGtnkGsiyvfskdl.qleevllgqsseIkei 127
                   +  G+  v++     ++ +l+g++ eI ++
  KOO25331.1 310 TASADGTARVYNTTTgACQAILIGHEGEISKV 341
                 99999999999976537999999999999875 PP

  == domain 4  score: 12.7 bits;  conditional E-value: 3.6e-05
   WD40_like   2 eiYsidiskkgslilyGgkddkctvlkleslesvsivesfedSvifvkl.ldddlilvvtlD 62 
                 ei  + ++++g+ i+  + d +c+v ++es++ ++++e+ +d +  + +  ++d i+ ++ D
  KOO25331.1 337 EISKVSFNPQGNKIITASSDRTCRVWDVESGDCMQVLEGHTDEIFSAAFnYEGDTIITGSKD 398
                 788899************************************99877763455677777766 PP

>> Ge1_WD40  WD40 region of Ge1, enhancer of mRNA-decapping protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.4   1.3   8.4e-06     0.014     182     284 ..     161     248 ..     133     277 .. 0.70
   2 ?    1.1   0.0     0.093   1.5e+02     267     284 ..     273     290 ..     264     294 .. 0.83
   3 !    8.4   0.4   0.00057      0.93     183     215 ..     288     321 ..     273     328 .. 0.83
   4 !    4.8   0.0    0.0069        11     182     217 ..     330     365 ..     321     372 .. 0.86
   5 ?    2.8   0.0     0.028        46     181     215 ..     370     405 ..     363     406 .] 0.84

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 8.4e-06
    Ge1_WD40 182 lkieehs.liveaafspdGtalatasedGevkffqvyledeeeprCLheWkPhdGkslssllfldnhkeesdeqfWrfaitgadnnselklWscelWtC 279
                   ++ h+ +iv+ +f p Gt++at s+d + k++ v   ++e   C      h   ++ sl f          +    +itg+ + +  k+W c++  C
  KOO25331.1 161 QTLRGHTtEIVCLSFDPTGTVVATGSMDSTAKLWDVAH-GTE--MCT--LLGHTA-EIVSLNFN---------TAGTMIITGSFD-HSTKVWDCSTGAC 243
                 456667559*************************9964.333..332..234544.56666552.........223467888765.4579999999999 PP

    Ge1_WD40 280 lqtik 284
                 lqt+ 
  KOO25331.1 244 LQTLA 248
                 99986 PP

  == domain 2  score: 1.1 bits;  conditional E-value: 0.093
    Ge1_WD40 267 selklWscelWtClqtik 284
                 +  k+W++ + +Cl t++
  KOO25331.1 273 RTCKVWNVRSGECLHTLR 290
                 5689************97 PP

  == domain 3  score: 8.4 bits;  conditional E-value: 0.00057
    Ge1_WD40 183 kieehs.liveaafspdGtalatasedGevkffq 215
                  ++ h  +i + af + Gt l tas+dG+ + + 
  KOO25331.1 288 TLRGHNdEILDVAFNTAGTRLVTASADGTARVYN 321
                 55667559*********************99996 PP

  == domain 4  score: 4.8 bits;  conditional E-value: 0.0069
    Ge1_WD40 182 lkieehsliveaafspdGtalatasedGevkffqvy 217
                 + i ++ +i++ +f p G  + tas+d + + + v 
  KOO25331.1 330 ILIGHEGEISKVSFNPQGNKIITASSDRTCRVWDVE 365
                 56778889***********************99985 PP

  == domain 5  score: 2.8 bits;  conditional E-value: 0.028
    Ge1_WD40 181 llkieehs.liveaafspdGtalatasedGevkffq 215
                 +  +e h+ +i +aaf  +G ++ t s+d + + ++
  KOO25331.1 370 MQVLEGHTdEIFSAAFNYEGDTIITGSKDNTCRIWK 405
                 5556778779*******************9999886 PP

>> eIF2A  Eukaryotic translation initiation factor eIF2A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.7   0.1   0.00022      0.36      67     162 ..      90     186 ..      80     192 .. 0.75
   2 !    8.5   0.0     0.001       1.7      75     141 ..     181     247 ..     172     280 .. 0.68
   3 !   12.1   0.0   7.9e-05      0.13      76     169 ..     266     361 ..     251     383 .. 0.83

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00022
                 E-TTSS-EEEEESSSSCEEEEEEC.SCEEEEEEEEES-..-EE.EE-TTSSEEEEE-TTSSS-EEEEEETTTTEEEEEEE-TT-..-EEEE-TTSSEEE CS
       eIF2A  67 WspkskefaviyGkmpakvslfdl.kvkviskleeqkr..Nti.ffspkgklvllaGfgnlaGeleiwdvkkkkkiakaeaana..tlvewspdgryvl 159
                  ++++++f  i G  +++ +++++ +++ + +le +k+   +i f +p+g  v+++ f  +    +iwd ++ + +++++  ++  + + ++p+g+ v+
  KOO25331.1  90 FNKSGDRF--ITGSYDRTCKVWNTlTGEELLTLEGHKNvvYAIaFNNPFGDKVVTGSFDKT---AKIWDSSTGELLQTLRGHTTeiVCLSFDPTGTVVA 183
                 56666666..68999999999998557777777654421123315589***********99...79*****9999999986655226779********9 PP

                 EEE CS
       eIF2A 160 Tat 162
                 T +
  KOO25331.1 184 TGS 186
                 976 PP

  == domain 2  score: 8.5 bits;  conditional E-value: 0.001
                 EEEESSSSCEEEEEECS.CEEEEEEEEES--..EEEE-TTSSEEEEE-TTSSS-EEEEEETTTTEEEEEE CS
       eIF2A  75 aviyGkmpakvslfdlk.vkviskleeqkrN..tiffspkgklvllaGfgnlaGeleiwdvkkkkkiaka 141
                 +v  G m+++++l+d+  +  +++l  + +   ++ f+  g++++++ f       ++wd ++  +++++
  KOO25331.1 181 VVATGSMDSTAKLWDVAhGTEMCTLLGHTAEivSLNFNTAGTMIITGSFDHS---TKVWDCSTGACLQTL 247
                 6778999999999999557777776555444116789999999999999775...688888866666655 PP

  == domain 3  score: 12.1 bits;  conditional E-value: 7.9e-05
                 EEESSSSCEEEEEECS.CEEEEEEEEES--..EEEE-TTSSEEEEE-TTSSS-EEEEEETT..TTEEEEEEE-TT--EEEE-TTSSEEEEEE-TTT-SS CS
       eIF2A  76 viyGkmpakvslfdlk.vkviskleeqkrN..tiffspkgklvllaGfgnlaGeleiwdvk..kkkkiakaeaanatlvewspdgryvlTattaprlrv 169
                  i G ++++ ++++++ ++ +++l+ ++     + f+  g+ +++a      G+  +++++   ++ i   ++ + ++v ++p+g+ ++Ta++    rv
  KOO25331.1 266 CISGSIDRTCKVWNVRsGECLHTLRGHNDEilDVAFNTAGTRLVTAS---ADGTARVYNTTtgACQAILIGHEGEISKVSFNPQGNKIITASSDRTCRV 361
                 58999*********987777777766655522689*********996...67889****9988999*************************99765554 PP

>> Nup160  Nucleoporin Nup120/160
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.0   0.1     0.078   1.3e+02     237     255 ..     101     119 ..      97     133 .. 0.85
   2 ?    0.7   0.0     0.097   1.6e+02     233     255 ..     140     162 ..     123     172 .. 0.84
   3 ?   -0.3   0.0       0.2   3.3e+02     230     251 ..     179     200 ..     164     211 .. 0.82
   4 !    6.7   0.0    0.0015       2.4     229     255 ..     220     246 ..     206     258 .. 0.84
   5 ?    3.6   0.1     0.013        21     237     255 ..     270     288 ..     265     300 .. 0.86
   6 !    4.6   0.0    0.0062        10     230     254 ..     305     329 ..     290     342 .. 0.83
   7 !    9.2   0.0   0.00026      0.43     229     255 ..     346     372 ..     337     383 .. 0.85

  Alignments for each domain:
  == domain 1  score: 1.0 bits;  conditional E-value: 0.078
                 ETT-EEEEEETTTTEEEEE CS
      Nup160 237 srdgkLrvWnlltgkclat 255
                 s d++ +vWn+ltg  l t
  KOO25331.1 101 SYDRTCKVWNTLTGEELLT 119
                 679**********988776 PP

  == domain 2  score: 0.7 bits;  conditional E-value: 0.097
                 EEEEETT-EEEEEETTTTEEEEE CS
      Nup160 233 lfalsrdgkLrvWnlltgkclat 255
                 +++ s d++ ++W+ +tg +l t
  KOO25331.1 140 VVTGSFDKTAKIWDSSTGELLQT 162
                 667789************99987 PP

  == domain 3  score: -0.3 bits;  conditional E-value: 0.2
                 TTEEEEEETT-EEEEEETTTTE CS
      Nup160 230 qtylfalsrdgkLrvWnlltgk 251
                  t++++ s d + ++W+++ g+
  KOO25331.1 179 GTVVATGSMDSTAKLWDVAHGT 200
                 5899999***********8665 PP

  == domain 4  score: 6.7 bits;  conditional E-value: 0.0015
                 TTTEEEEEETT-EEEEEETTTTEEEEE CS
      Nup160 229 gqtylfalsrdgkLrvWnlltgkclat 255
                 + t++ + s d+  +vW+ +tg cl t
  KOO25331.1 220 AGTMIITGSFDHSTKVWDCSTGACLQT 246
                 6689********************998 PP

  == domain 5  score: 3.6 bits;  conditional E-value: 0.013
                 ETT-EEEEEETTTTEEEEE CS
      Nup160 237 srdgkLrvWnlltgkclat 255
                 s d++ +vWn+++g cl t
  KOO25331.1 270 SIDRTCKVWNVRSGECLHT 288
                 679*************998 PP

  == domain 6  score: 4.6 bits;  conditional E-value: 0.0062
                 TTEEEEEETT-EEEEEETTTTEEEE CS
      Nup160 230 qtylfalsrdgkLrvWnlltgkcla 254
                  t l+++s dg+ rv n++tg c a
  KOO25331.1 305 GTRLVTASADGTARVYNTTTGACQA 329
                 56799****************9976 PP

  == domain 7  score: 9.2 bits;  conditional E-value: 0.00026
                 TTTEEEEEETT-EEEEEETTTTEEEEE CS
      Nup160 229 gqtylfalsrdgkLrvWnlltgkclat 255
                 + + + ++s+d++ rvW++++g c+ +
  KOO25331.1 346 QGNKIITASSDRTCRVWDVESGDCMQV 372
                 557799******************976 PP

>> WD40_3  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.2   0.0      0.24   3.8e+02       6      23 ..     166     183 ..     165     191 .. 0.92
   2 ?    1.6   0.0      0.17   2.8e+02       6      23 ..     208     225 ..     205     244 .. 0.89
   3 !   14.4   0.0   1.7e-05     0.027       6      41 ..     292     327 ..     291     332 .. 0.91
   4 ?   -1.2   0.0       1.3   2.1e+03       6      23 ..     334     351 ..     333     359 .. 0.87

  Alignments for each domain:
  == domain 1  score: 1.2 bits;  conditional E-value: 0.24
      WD40_3   6 HsvgIkklfpnpsGtrlv 23 
                 H+++I+ l  +p+Gt ++
  KOO25331.1 166 HTTEIVCLSFDPTGTVVA 183
                 999************997 PP

  == domain 2  score: 1.6 bits;  conditional E-value: 0.17
      WD40_3   6 HsvgIkklfpnpsGtrlv 23 
                 H+++I++l  n +Gt ++
  KOO25331.1 208 HTAEIVSLNFNTAGTMII 225
                 999************987 PP

  == domain 3  score: 14.4 bits;  conditional E-value: 1.7e-05
      WD40_3   6 HsvgIkklfpnpsGtrlvfiDekgdgfvynPvseel 41 
                 H+++I  +  n +Gtrlv   ++g + vyn+ + ++
  KOO25331.1 292 HNDEILDVAFNTAGTRLVTASADGTARVYNTTTGAC 327
                 99****************************988555 PP

  == domain 4  score: -1.2 bits;  conditional E-value: 1.3
      WD40_3   6 HsvgIkklfpnpsGtrlv 23 
                 H+ +I k+  np+G +++
  KOO25331.1 334 HEGEISKVSFNPQGNKII 351
                 77889********99887 PP

>> Nucleoporin_N  Nup133 N terminal like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.4   0.0      0.13   2.1e+02     202     231 ..     168     197 ..     139     234 .. 0.78
   2 ?    3.6   0.0     0.014        22      43      78 ..     271     307 ..     269     328 .. 0.76
   3 !    7.7   0.0   0.00081       1.3     201     250 ..     335     382 ..     331     405 .. 0.80

  Alignments for each domain:
  == domain 1  score: 0.4 bits;  conditional E-value: 0.13
                    G-EEEEEEECCTCEEEEEETTSEEEEEEEE CS
  Nucleoporin_N 202 eeivqlridssrrilytlsskgvirvydls 231
                     eiv+l  d++   + t s +++ + +d+ 
     KOO25331.1 168 TEIVCLSFDPTGTVVATGSMDSTAKLWDVA 197
                    578888888888888888888888888877 PP

  == domain 2  score: 3.6 bits;  conditional E-value: 0.014
                    ETTEEEEEETTSSSS...EEEEEE----S---EEE......E CS
  Nucleoporin_N  43 vdnklflWnYnstasspstdtipydgeehtilavg......l 78 
                    +d+ + +Wn +s++     + +++ g+  +il+v+       
     KOO25331.1 271 IDRTCKVWNVRSGE-----CLHTLRGHNDEILDVAfntagtR 307
                    78889999999997.....99999999999999984444443 PP

  == domain 3  score: 7.7 bits;  conditional E-value: 0.00081
                    GG-EEEEEEECCTCEEEEEETTSEEEEEEEETTCEE-EEEEEEEHHHHHH CS
  Nucleoporin_N 201 reeivqlridssrrilytlsskgvirvydlsasngesslksdidirqill 250
                    + ei ++   ++ + ++t+ss+++ rv+d++  +g++ ++ + +  +i++
     KOO25331.1 335 EGEISKVSFNPQGNKIITASSDRTCRVWDVE--SGDCMQVLEGHTDEIFS 382
                    5689999999999******************..55666665555555555 PP

>> YabP  YabP family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.8   0.0     0.064     1e+02       4      20 ..     111     127 ..     111     129 .. 0.92
   2 ?   -1.5   0.0       1.3   2.2e+03      37      61 ..     162     189 ..     144     190 .. 0.76
   3 ?    0.3   0.0      0.39   6.3e+02      45      60 ..     212     230 ..     200     232 .. 0.75
   4 ?    2.7   0.0     0.069   1.1e+02      47      60 ..     258     272 ..     240     274 .. 0.85

  Alignments for each domain:
  == domain 1  score: 2.8 bits;  conditional E-value: 0.064
        YabP   4 tltgrkelliegvkgvl 20 
                 tltg + l++eg+k+v+
  KOO25331.1 111 TLTGEELLTLEGHKNVV 127
                 799***********996 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 1.3
        YabP  37 tIkGenLhikkls...kgelkieGkIds 61 
                 t++G   +i +ls   +g+++ +G  ds
  KOO25331.1 162 TLRGHTTEIVCLSfdpTGTVVATGSMDS 189
                 5677777788888888999999998876 PP

  == domain 3  score: 0.3 bits;  conditional E-value: 0.39
        YabP  45 ikkls...kgelkieGkId 60 
                 i +l+    g++ i+G +d
  KOO25331.1 212 IVSLNfntAGTMIITGSFD 230
                 5566666789999999876 PP

  == domain 4  score: 2.7 bits;  conditional E-value: 0.069
        YabP  47 kls.kgelkieGkId 60 
                 +++ +gel+i+G Id
  KOO25331.1 258 QFDfTGELCISGSID 272
                 45689*********8 PP

>> DUF5114  Domain of unknown function (DUF5114)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.0       5.1   8.3e+03      55      87 ..      88     120 ..      86     122 .. 0.67
   2 ?    2.7   0.1      0.11   1.8e+02      46      86 ..     188     226 ..     162     231 .. 0.76
   3 ?    8.1   0.2    0.0024       3.9      14      86 ..     300     372 ..     292     376 .. 0.78

  Alignments for each domain:
  == domain 1  score: -2.6 bits;  conditional E-value: 5.1
     DUF5114  55 vaFggnaeqltfgetAgditvsvpaaGectlvl 87 
                  aF +++++   g       v  + +Ge +l+l
  KOO25331.1  88 CAFNKSGDRFITGSYDRTCKVWNTLTGEELLTL 120
                 677777777776666666666667788887776 PP

  == domain 2  score: 2.7 bits;  conditional E-value: 0.11
     DUF5114  46 DdakaietpvaFggnaeqltfgetAgditvsvpaaGectlv 86 
                 D ++a+  +va g++     +g+tA+ ++++  +aG+++++
  KOO25331.1 188 D-STAKLWDVAHGTEMCT-LLGHTAEIVSLNFNTAGTMIIT 226
                 4.6677777777654433.4699*************98775 PP

  == domain 3  score: 8.1 bits;  conditional E-value: 0.0024
     DUF5114  14 tftattatnvtiqisGtGklYnnetvsgdnatDdakaietpvaFggnaeqltfgetAgditvsvpaaGectlv 86 
                 +f+++    vt + +Gt ++Yn++t++ ++     ++   +v+F  +++++  + +     v   ++G+c+ v
  KOO25331.1 300 AFNTAGTRLVTASADGTARVYNTTTGACQAILIGHEGEISKVSFNPQGNKIITASSDRTCRVWDVESGDCMQV 372
                 6888888889999************888777777888889999999999998877766666654557777665 PP

>> DUF5570  Family of unknown function (DUF5570)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.8   0.0      0.29   4.7e+02      19      46 ..     133     160 ..     127     174 .. 0.76
   2 ?    9.1   0.5   0.00083       1.3      20      66 ..     176     219 ..     166     256 .. 0.71
   3 ?    0.9   0.3      0.29   4.7e+02      30      76 ..     270     313 ..     254     342 .. 0.66
   4 ?    2.2   0.2      0.11   1.8e+02      20      80 ..     344     401 ..     327     403 .. 0.76

  Alignments for each domain:
  == domain 1  score: 0.8 bits;  conditional E-value: 0.29
     DUF5570  19 dspsgrsasarsegstaslwdvsdgqdv 46 
                 + p g    + s  +ta +wd s g+ +
  KOO25331.1 133 NNPFGDKVVTGSFDKTAKIWDSSTGELL 160
                 578888888889999********99644 PP

  == domain 2  score: 9.1 bits;  conditional E-value: 0.00083
     DUF5570  20 spsgrsasarsegstaslwdvsdgqdvhahaivtrtcesvlssavyt 66 
                  p+g   ++ s  sta lwdv+ g ++   +++  t e ++s    t
  KOO25331.1 176 DPTGTVVATGSMDSTAKLWDVAHGTEM--CTLLGHTAE-IVSLNFNT 219
                 79**********************998..445555554.33444444 PP

  == domain 3  score: 0.9 bits;  conditional E-value: 0.29
     DUF5570  30 segstaslwdvsdgqdvhahaivtrtcesvlssavytqgcgyvrsat 76 
                 s   t+ +w+v +g+ +  h+ +    + +l  a  t g   v +++
  KOO25331.1 270 SIDRTCKVWNVRSGECL--HT-LRGHNDEILDVAFNTAGTRLVTASA 313
                 55678889999999988..43.3444566777777777776655443 PP

  == domain 4  score: 2.2 bits;  conditional E-value: 0.11
     DUF5570  20 spsgrsasarsegstaslwdvsdgqdvhahaivtrtcesvlssavytqgcgyvrsatniac 80 
                  p g    + s   t+ +wdv +g+ +    ++    + ++s+a   +g  +   + + +c
  KOO25331.1 344 NPQGNKIITASSDRTCRVWDVESGDCM---QVLEGHTDEIFSAAFNYEGDTIITGSKDNTC 401
                 68888888899999*******999876...4555556677777777777666666666666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (406 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       488  (0.0272185); expected 358.6 (0.02)
Passed bias filter:                      420  (0.0234257); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.66u 0.25s 00:00:00.91 Elapsed: 00:00:00.44
# Mc/sec: 2760.90
//
Query:       KOO25332.1  [L=234]
Description: seryl-tRNA synthetase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.7e-22   79.7   3.0    2.6e-22   79.1   3.0    1.2  1  Seryl_tRNA_N  Seryl-tRNA synthetase N-terminal domain


Domain annotation for each model (and alignments):
>> Seryl_tRNA_N  Seryl-tRNA synthetase N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   79.1   3.0   1.4e-26   2.6e-22       1      97 [.       1     102 [.       1     110 [. 0.95

  Alignments for each domain:
  == domain 1  score: 79.1 bits;  conditional E-value: 1.4e-26
                   ---HHHHHH....-HHHHHHHHCCCTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCTT.S-TCCCCCCCHHHHHHHHHHHHHHHH CS
  Seryl_tRNA_N   1 MLDiklire....npeavkeklkkRgedkadvdelleldekrrelqveleelqaerNelskeIgkakkkk.edaeeliaevkelkeelkaleaelke 92 
                   MLDi+l+r     np+ v+e++++R++d+++vd+++eld+++r+++  l+++++  N+++k+Ig+ +kkk     el++e ++  +e+ +lea++ke
    KOO25332.1   1 MLDIDLFRVdrggNPDIVRESQRRRHKDVSLVDKVIELDTEWRSTRGGLDNAKKVLNQVQKKIGEFMKKKeSPPPELMKEKQDADAEITKLEAKEKE 97 
                   **********************************************************************767899********************9 PP

                   HHHHH CS
  Seryl_tRNA_N  93 leael 97 
                   l ++ 
    KOO25332.1  98 LIEAR 102
                   97765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (234 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       914  (0.0509789); expected 358.6 (0.02)
Passed bias filter:                      627  (0.0349713); expected 358.6 (0.02)
Passed Vit filter:                        66  (0.00368119); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.24s 00:00:00.69 Elapsed: 00:00:00.39
# Mc/sec: 1791.06
//
Query:       KOO25333.1  [L=400]
Description: 26s protease regulatory subunit 8-like a-like protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.8e-42  144.2   0.1    9.8e-42  142.5   0.0    1.9  2  AAA              ATPase family associated with various cellul
    2.5e-10   40.0   0.2    5.2e-10   39.0   0.2    1.5  1  AAA_lid_3        AAA+ lid domain
    3.9e-07   29.9   0.5    8.8e-07   28.8   0.5    1.6  1  Prot_ATP_ID_OB   Proteasomal ATPase OB C-terminal domain
    4.8e-06   26.8   0.0    9.7e-06   25.8   0.0    1.5  1  AAA_2            AAA domain (Cdc48 subfamily)
    4.6e-05   23.4   0.0    0.00021   21.3   0.0    2.2  1  AAA_5            AAA domain (dynein-related subfamily)
    8.2e-05   23.0   2.1    0.00066   20.1   0.5    3.0  1  AAA_16           AAA ATPase domain
    9.4e-05   22.2   0.0    0.00024   20.9   0.0    1.6  1  RuvB_N           Holliday junction DNA helicase RuvB P-loop d
    0.00026   21.3   0.2      0.034   14.4   0.2    2.6  1  AAA_22           AAA domain
    0.00039   20.6   0.0     0.0012   19.0   0.0    2.0  1  AAA_33           AAA domain
     0.0024   18.1   0.1     0.0065   16.7   0.1    1.7  1  DUF2072          Zn-ribbon containing protein
     0.0041   16.5   0.1     0.0087   15.5   0.1    1.5  1  Mg_chelatase     Magnesium chelatase, subunit ChlI
     0.0056   16.2   0.1      0.095   12.1   0.0    2.3  2  PhoH             PhoH-like protein
     0.0059   16.4   0.0      0.011   15.4   0.0    1.4  1  IstB_IS21        IstB-like ATP binding protein
     0.0063   15.8   0.0      0.012   14.8   0.0    1.5  1  TIP49            TIP49 P-loop domain
     0.0066   16.3   0.0      0.028   14.3   0.0    2.0  2  AAA_3            ATPase family associated with various cellul
  ------ inclusion threshold ------
      0.016   14.9   0.0       0.11   12.1   0.0    2.3  2  Sigma54_activat  Sigma-54 interaction domain
      0.018   15.6   0.1      0.075   13.6   0.0    2.2  2  AAA_18           AAA domain
      0.026   14.8   0.0      0.057   13.7   0.0    1.6  1  AAA_28           AAA domain
      0.029   13.7   0.0       0.13   11.6   0.0    2.0  2  ATPase           KaiC
      0.038   14.4   0.0       0.13   12.7   0.0    2.0  1  AAA_17           AAA domain
      0.052   12.8   0.0       0.17   11.1   0.0    1.9  1  Zeta_toxin       Zeta toxin
      0.062   13.1   0.2       0.29   10.9   0.0    2.1  2  AAA_11           AAA domain
      0.062   12.8   0.0       0.12   11.9   0.0    1.3  1  AAA_7            P-loop containing dynein motor region
      0.065   12.9   0.1       0.14   11.9   0.1    1.8  1  AAA_24           AAA domain
      0.073   13.1   0.0       0.14   12.2   0.0    1.4  1  TsaE             Threonylcarbamoyl adenosine biosynthesis pro
      0.076   13.4   0.0       0.15   12.5   0.0    1.5  1  RNA_helicase     RNA helicase
      0.076   12.1   0.0       0.13   11.4   0.0    1.2  1  Parvo_NS1        Parvovirus non-structural protein NS1


Domain annotation for each model (and alignments):
>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.0       6.4   4.2e+03      64      91 ..      22      51 ..      21      67 .. 0.57
   2 !  142.5   0.0   1.5e-44   9.8e-42       1     131 [.     180     312 ..     180     313 .. 0.96

  Alignments for each domain:
  == domain 1  score: -1.9 bits;  conditional E-value: 6.4
                EETGGGHHHHH..TTCCCHHHHHHHHHHHH CS
         AAA 64 iDEidalaksr..sgseseeeervvnqLlt 91
                i+E++ ++++r  + +  e +++ +n +++
  KOO25333.1 22 IEELEVIVRERtqNLRRLEAQRNELNSMVR 51
                788999999995422233333333333333 PP

  == domain 2  score: 142.5 bits;  conditional E-value: 1.5e-44
                 EEEESSTTSSHHHHHHHHHHHHTHEEEEEETTTCSSSSTTHHHHHHHHHHHHHHHTSTSEEEEEETGGGHHHHH...TTCCCHHHHHHHHHHHHHHHHT CS
         AAA   1 vllyGppGtGKTllakavakelgvefleisgsellskyvgesekkirelfkeakekakpsilfiDEidalaksr...sgseseeeervvnqLlteldgv 96 
                 vl+yGppGtGKTlla+ava++++ +f+++sg el++ky+ge+++ +relf  a+e+a psi+f+DEid+++++r   +++ ++e +r++ +Ll++ldg+
  KOO25333.1 180 VLMYGPPGTGKTLLARAVAHHTDCTFIRVSGGELVQKYIGEGSRMVRELFVMAREHA-PSIIFMDEIDSIGGARqdgESGGDSEVQRTMLELLNQLDGF 277
                 79******************************************************9.****************9876778888999999********* PP

                 TTSSSTEEEEEEESSGGGSTHHHHS.TTSSEEEETT CS
         AAA  97 kkkeskvivigatnrpdkldpallr.gRfdrkieie 131
                 +   +++ v++atnr+d ld+allr gR+drkie++
  KOO25333.1 278 EAT-NQIKVVMATNRIDILDQALLRpGRIDRKIEFP 312
                 **7.66****************************98 PP

>> AAA_lid_3  AAA+ lid domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.0   0.2   7.8e-13   5.2e-10       2      44 ..     336     378 ..     335     379 .. 0.97

  Alignments for each domain:
  == domain 1  score: 39.0 bits;  conditional E-value: 7.8e-13
   AAA_lid_3   2 vdlkeLAerTeGySGADlaalcreAallAlrrgikeitmedfe 44 
                 +dl ++A+ ++  SGA+ +a+c eA++ Alr+ + ++t++dfe
  KOO25333.1 336 IDLRKIAKSMHEASGAETKAVCTEAGMFALRERRVHVTQDDFE 378
                 8*****************************************8 PP

>> Prot_ATP_ID_OB  Proteasomal ATPase OB C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.8   0.5   1.3e-09   8.8e-07       1      57 []      67     122 ..      67     122 .. 0.97

  Alignments for each domain:
  == domain 1  score: 28.8 bits;  conditional E-value: 1.3e-09
                     EEEEEEE-TTSSEEEEE-TTS-EEEEEE-GGGSSST--TTEEEEEETTTTEEEEEE- CS
  Prot_ATP_ID_OB   1 VatVsEvlddteraiVktssdeevvvslagavpremLrpgDlVavdkdtgfifEkLP 57 
                     V++++ +++  ++++Vk +   ++vv + ++++  +L ++D+Va+ +d+++ + +LP
      KOO25333.1  67 VGELVAIMGR-KKVLVKVHPEGKYVVDIDKSIDIGKLNVNDRVALRNDSYALHLVLP 122
                     899999**99.****************************************999998 PP

>> AAA_2  AAA domain (Cdc48 subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.8   0.0   1.5e-08   9.7e-06       6     104 ..     180     272 ..     176     296 .. 0.89

  Alignments for each domain:
  == domain 1  score: 25.8 bits;  conditional E-value: 1.5e-08
                 EEEE--TTSSHHHHHHHHHHHTT-....-EEEEEGGG-------THHHHHHHHHTTT-HHHHTTS..EEEEETGGG-------------HHHHHHHHHH CS
       AAA_2   6 illlgptgvGktelakalaellfvkkekkliradaselleeeevehlvsrligappgyvgaeegG..ivllDEidKihpkessgadvSregVqrdLLqi 102
                 +l+ gp g+Gkt+la+a+a + ++    ++ir+   el +    + + +     ++  v a e+   i+++DEid i   ++ g+     +Vqr +L +
  KOO25333.1 180 VLMYGPPGTGKTLLARAVAHHTDC----TFIRVSGGELVQ----KYIGEGSRMVRELFVMAREHApsIIFMDEIDSIGGARQDGESGGDSEVQRTMLEL 270
                 6889*******************8....************....88888888999999999999999************88888888889*******99 PP

                 HH CS
       AAA_2 103 le 104
                 l 
  KOO25333.1 271 LN 272
                 86 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.3   0.0   3.1e-07   0.00021       1      77 [.     179     248 ..     179     301 .. 0.78

  Alignments for each domain:
  == domain 1  score: 21.3 bits;  conditional E-value: 3.1e-07
                 EEEEE--SSSSHHHHHHHGGGGBS--EEEEE--TT--HHHHH--B--.........--------.G-SEEEEESGGG- CS
       AAA_5   1 dvlLvGppGtgKselaerlaaalnreveyvqltrdtteedlkgrreikngttslvdsplvraar.egeilvlDEvera 77 
                 +vl+ GppGtgK+ la+ +a+ + +++  v + +      l++++   +++ ++v   +v a +  ++i+++DE++ +
  KOO25333.1 179 GVLMYGPPGTGKTLLARAVAHHTDCTFIRVSGGE------LVQKYI--GEGSRMVRELFVMAREhAPSIIFMDEIDSI 248
                 59*********************99998887765......778777..344444444444333357888888888865 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.1   0.5     1e-06   0.00066      15      49 ..     168     202 ..     166     398 .. 0.71

  Alignments for each domain:
  == domain 1  score: 20.1 bits;  conditional E-value: 1e-06
      AAA_16  15 alervrsgrpelvllsGesGvGKsslvrellrale 49 
                 ++e++   +p  vl +G++G+GK+ l+r+++++  
  KOO25333.1 168 LFESLGIAQPKGVLMYGPPGTGKTLLARAVAHHTD 202
                 56677778999********************7433 PP

>> RuvB_N  Holliday junction DNA helicase RuvB P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.9   0.0   3.5e-07   0.00024      35      94 ..     179     246 ..     153     253 .. 0.70

  Alignments for each domain:
  == domain 1  score: 20.9 bits;  conditional E-value: 3.5e-07
      RuvB_N  35 hvllyGpPGlGkttlakiiakelgvkl.kitsgPvleka.gdlaalltnl......eekdvlfideih 94 
                  vl+yGpPG Gkt la+ +a+  + ++ +++ g  ++k  g+ + ++ +l      ++  ++f+dei 
  KOO25333.1 179 GVLMYGPPGTGKTLLARAVAHHTDCTFiRVSGGELVQKYiGEGSRMVRELfvmareHAPSIIFMDEID 246
                 69*********************988615555666666333333332222111111344688888886 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.4   0.2   5.1e-05     0.034       9      30 ..     181     202 ..     176     297 .. 0.78

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 5.1e-05
      AAA_22   9 vvtGesGtGKTtllrrlleqld 30 
                 + +G++GtGKT+l+r +++  d
  KOO25333.1 181 LMYGPPGTGKTLLARAVAHHTD 202
                 679**************99763 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.0   0.0   1.8e-06    0.0012       2      39 ..     180     219 ..     180     339 .. 0.79

  Alignments for each domain:
  == domain 1  score: 19.0 bits;  conditional E-value: 1.8e-06
      AAA_33   2 vllvGlpGsGKstlaerllkklg..avllssdtlrrrlfg 39 
                 vl+ G+pG+GK+ la+ ++ +++  ++++s  +l +++ g
  KOO25333.1 180 VLMYGPPGTGKTLLARAVAHHTDctFIRVSGGELVQKYIG 219
                 79***************99777766777776665554444 PP

>> DUF2072  Zn-ribbon containing protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.1   9.8e-06    0.0065      58     130 ..      26      96 ..       4      98 .. 0.65

  Alignments for each domain:
  == domain 1  score: 16.7 bits;  conditional E-value: 9.8e-06
     DUF2072  58 eevldaeeteeeklekkekekaekekeeedrvesvrilepGsYelNlekLlerdelvmalkeegkYvvdlpsv 130
                 e ++ +++++ ++le +++e ++  ++  +++    + epGsY   l  ++ r+ ++++++ egkYvvd+  +
  KOO25333.1  26 EVIVRERTQNLRRLEAQRNELNSMVRHLREEL--SLLQEPGSYVGELVAIMGRKKVLVKVHPEGKYVVDIDKS 96 
                 33433333333344443333333333333333..33569******************************9765 PP

>> Mg_chelatase  Magnesium chelatase, subunit ChlI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.1   1.3e-05    0.0087      24      42 ..     179     197 ..     170     201 .. 0.85

  Alignments for each domain:
  == domain 1  score: 15.5 bits;  conditional E-value: 1.3e-05
  Mg_chelatase  24 nlllvGppGsGKtmlakrl 42 
                    +l++GppG+GKt+la+++
    KOO25333.1 179 GVLMYGPPGTGKTLLARAV 197
                   68**************987 PP

>> PhoH  PhoH-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.1   0.0   0.00014     0.095      19      41 ..     177     199 ..     167     203 .. 0.84
   2 ?    1.3   0.0      0.29   1.9e+02      76     114 ..     263     301 ..     251     309 .. 0.84

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 0.00014
                 -SEEEEE--TTSSTTHHHHHHHH CS
        PhoH  19 ndivfaiGpaGtGKtylavalav 41 
                  + v + Gp GtGKt+la a+a 
  KOO25333.1 177 PKGVLMYGPPGTGKTLLARAVAH 199
                 5568899***********99985 PP

  == domain 2  score: 1.3 bits;  conditional E-value: 0.29
                 --TTTHHHHHHHTTTS-TTCHHHHHHTTSEEEEEGGGGT CS
        PhoH  76 vdpylrplydaLkdllgaekvekllekgkievaplaymR 114
                 v+  +  l ++L+ +  +++++ ++ +++i +++ a +R
  KOO25333.1 263 VQRTMLELLNQLDGFEATNQIKVVMATNRIDILDQALLR 301
                 5666778889999999999***************99999 PP

>> IstB_IS21  IstB-like ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.0   1.7e-05     0.011      44      70 ..     174     200 ..     156     211 .. 0.87

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 1.7e-05
   IstB_IS21  44 iekkenivllGpsGvGKshlaialgve 70 
                 i++ +++++ Gp+G+GK+ la a++++
  KOO25333.1 174 IAQPKGVLMYGPPGTGKTLLARAVAHH 200
                 6677899****************9986 PP

>> TIP49  TIP49 P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.0   1.8e-05     0.012      51      90 ..     178     215 ..     149     229 .. 0.88

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 1.8e-05
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
       TIP49  51 ravLlaGpsgtGktalaiaiskelgedvpfvalsgsevys 90 
                 ++vL+ Gp+gtGkt la a++++  +d  f+ +sg+e+ +
  KOO25333.1 178 KGVLMYGPPGTGKTLLARAVAHH--TDCTFIRVSGGELVQ 215
                 89*******************97..579999999999865 PP

>> AAA_3  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.3   0.0   4.3e-05     0.028       2      30 ..     180     208 ..     179     218 .. 0.94
   2 ?   -1.6   0.0       3.3   2.2e+03      12      38 ..     352     378 ..     346     394 .. 0.68

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 4.3e-05
       AAA_3   2 vllegvPGlaktllvkalakaldlefkri 30 
                 vl+ g PG++ktll++a+a++ d++f r+
  KOO25333.1 180 VLMYGPPGTGKTLLARAVAHHTDCTFIRV 208
                 7999**********************998 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 3.3
       AAA_3  12 ktllvkalakaldlefkriqftpdllP 38 
                  t++v + a ++ l+ +r+ +t d + 
  KOO25333.1 352 ETKAVCTEAGMFALRERRVHVTQDDFE 378
                 566666777777777777777777544 PP

>> Sigma54_activat  Sigma-54 interaction domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   0.00017      0.11      21      46 ..     176     201 ..     164     221 .. 0.78
   2 ?   -1.4   0.0       2.6   1.7e+03      95     110 ..     238     253 ..     230     255 .. 0.79

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 0.00017
                      SSS-EEEECSTTSSHHHHHHHHHHHS CS
  Sigma54_activat  21 tdlsvlitGesGtGKellaraiheas 46 
                      ++  vl+ G  GtGK+llara+ +++
       KOO25333.1 176 QPKGVLMYGPPGTGKTLLARAVAHHT 201
                      56789***************996543 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 2.6
                      SEEEEETGGGS-HHHH CS
  Sigma54_activat  95 GtlfLDeigelplelQ 110
                      +++f+Dei ++  + Q
       KOO25333.1 238 SIIFMDEIDSIGGARQ 253
                      689*****99866555 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.0       4.7   3.1e+03      55      67 ..      44      56 ..      17     120 .. 0.60
   2 ?   13.6   0.0   0.00011     0.075       2      31 ..     181     217 ..     180     300 .. 0.85

  Alignments for each domain:
  == domain 1  score: -1.4 bits;  conditional E-value: 4.7
      AAA_18 55 dkldklldaleen 67
                + l++ ++ l+e 
  KOO25333.1 44 NELNSMVRHLREE 56
                3333333333333 PP

  == domain 2  score: 13.6 bits;  conditional E-value: 0.00011
      AAA_18   2 lltGtpGvGKttlakeLskrlgf.......gvnlrdv 31 
                 l  G+pG+GKt la++++ ++ +       g+ ++++
  KOO25333.1 181 LMYGPPGTGKTLLARAVAHHTDCtfirvsgGELVQKY 217
                 678**************99998888877765444444 PP

>> AAA_28  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.0   8.6e-05     0.057       2      38 ..     180     221 ..     179     241 .. 0.76

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 8.6e-05
      AAA_28   2 ivitGgestGKTtlleaLaar....gypvv.pEaareileek 38 
                 + + G+++tGKT l++a a +     ++v   E + +++ e+
  KOO25333.1 180 VLMYGPPGTGKTLLARAVAHHtdctFIRVSgGELVQKYIGEG 221
                 5789***************98755545555566666665554 PP

>> ATPase  KaiC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   0.00019      0.13      13      37 ..     171     195 ..     149     200 .. 0.85
   2 ?   -2.0   0.0       2.8   1.8e+03     125     157 ..     245     280 ..     223     286 .. 0.70

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 0.00019
      ATPase  13 kgGipegrvvlitGepGtGKtifal 37 
                 + Gi + + vl++G pGtGKt++a 
  KOO25333.1 171 SLGIAQPKGVLMYGPPGTGKTLLAR 195
                 4699999***************985 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 2.8
      ATPase 125 iDsitgl.a..yeekeavaReilrqlvrvlkklgvT 157
                 iDsi+g  +  ++  ++++ +++ +l+++l + + T
  KOO25333.1 245 IDSIGGArQdgESGGDSEVQRTMLELLNQLDGFEAT 280
                 777777732112334566788888888888777777 PP

>> AAA_17  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   0.00019      0.13       1      37 [.     183     221 ..     183     247 .. 0.81

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 0.00019
                 EE-TTSSHHHHHHHHHHHHTEEE..EEHHHHHHHHHHTT CS
      AAA_17   1 lGgPGsGKgtqceklvekygfth..lsaGdllreeakrg 37 
                 +G+PG GK+ +++ ++++ + t+  +s G+l+ + + +g
  KOO25333.1 183 YGPPGTGKTLLARAVAHHTDCTFirVSGGELVQKYIGEG 221
                 7***************99988873358899987776555 PP

>> Zeta_toxin  Zeta toxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   0.00026      0.17      14      50 ..     175     209 ..     167     232 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00026
  Zeta_toxin  14 erPklillgGqpGAGKselaellkdelerqgnvvrld 50 
                  +Pk +l+ G pG GK+ la++++  +  +  ++r++
  KOO25333.1 175 AQPKGVLMYGPPGTGKTLLARAVAHHT--DCTFIRVS 209
                 58********************99987..56666665 PP

>> AAA_11  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.1       2.2   1.4e+03     153     181 ..      29      57 ..      12      63 .. 0.61
   2 ?   10.9   0.0   0.00044      0.29      16      40 ..     176     200 ..     162     235 .. 0.83

  Alignments for each domain:
  == domain 1  score: -1.2 bits;  conditional E-value: 2.2
      AAA_11 153 kkskekskskleqerrklkkerkelskel 181
                  ++++++ ++le++r++l++ ++ l++el
  KOO25333.1  29 VRERTQNLRRLEAQRNELNSMVRHLREEL 57 
                 44555566666666666666666666655 PP

  == domain 2  score: 10.9 bits;  conditional E-value: 0.00044
      AAA_11  16 eseitliqGPPGtgKTktivellsq 40 
                 +++ +l+ GPPGtgKT    ++ ++
  KOO25333.1 176 QPKGVLMYGPPGTGKTLLARAVAHH 200
                 455589**********776666655 PP

>> AAA_7  P-loop containing dynein motor region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   0.00018      0.12      30      58 ..     174     202 ..     166     210 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 0.00018
       AAA_7  30 lknkkpvllvGptGtGKtviikdllkkld 58 
                 +++ k vl++Gp GtGKt++++ + ++ d
  KOO25333.1 174 IAQPKGVLMYGPPGTGKTLLARAVAHHTD 202
                 678899**************999887766 PP

>> AAA_24  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.1   0.00021      0.14       4      22 ..     179     197 ..     176     293 .. 0.88

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 0.00021
      AAA_24   4 kiliyGpsgiGKTtlakel 22 
                  +l+yGp+g+GKT la+  
  KOO25333.1 179 GVLMYGPPGTGKTLLARAV 197
                 5899***********9987 PP

>> TsaE  Threonylcarbamoyl adenosine biosynthesis protein TsaE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   0.00021      0.14      19      59 ..     177     217 ..     152     228 .. 0.75

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 0.00021
                 TEEEEEEESTTSSHHHHHHHHHHHTT------TTTTSEEEE CS
        TsaE  19 gdvilLeGdLGaGKTtlvrglakalgveevkSPTFtlveeY 59 
                  + +l++G+ G+GKT l+r++a++ +++ ++     lv++Y
  KOO25333.1 177 PKGVLMYGPPGTGKTLLARAVAHHTDCTFIRVSGGELVQKY 217
                 4559*******************999885544444555555 PP

>> RNA_helicase  RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   0.00022      0.15       1      48 [.     180     218 ..     180     248 .. 0.67

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 0.00022
  RNA_helicase   1 iwlyGpsgeGKStlakeLakallkklklkkkdsvysrnpeddfwdgYt 48 
                   +++yGp+g+GK++la+ +a+         ++d +++r +  + +++Y 
    KOO25333.1 180 VLMYGPPGTGKTLLARAVAH---------HTDCTFIRVSGGELVQKYI 218
                   679*************9444.........3344444555555555555 PP

>> Parvo_NS1  Parvovirus non-structural protein NS1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   0.00019      0.13     117     139 ..     180     202 ..     176     206 .. 0.90

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00019
   Parvo_NS1 117 vwfyGpantGktnlaeaIakavp 139
                 v++yGp+ tGkt la+a a+ ++
  KOO25333.1 180 VLMYGPPGTGKTLLARAVAHHTD 202
                 799****************9876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (400 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1035  (0.0577277); expected 358.6 (0.02)
Passed bias filter:                      784  (0.043728); expected 358.6 (0.02)
Passed Vit filter:                       124  (0.00691617); expected 17.9 (0.001)
Passed Fwd filter:                        27  (0.00150594); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              27  [number of targets reported over threshold]
# CPU time: 0.60u 0.30s 00:00:00.89 Elapsed: 00:00:00.43
# Mc/sec: 2794.15
//
Query:       KOO25334.1  [L=3177]
Description: leucine rich repeat -containing protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.5e-15   56.3  37.9    0.00024   21.4   1.0    7.9  7  LRR_4           Leucine Rich repeats (2 copies)
    8.7e-15   54.2  45.8    6.6e-08   32.2   6.8    8.6  7  LRR_8           Leucine rich repeat
    1.2e-09   38.4   0.0    2.3e-09   37.5   0.0    1.5  1  Roc             Ras of Complex, Roc, domain of DAPkinase
    3.8e-08   32.8  70.7     0.0056   16.6   0.9   15.7 18  LRR_6           Leucine Rich repeat
    5.9e-05   22.5   0.0    0.00015   21.1   0.0    1.6  2  ART             NAD:arginine ADP-ribosyltransferase
    0.00039   20.0   0.0    0.00081   19.0   0.0    1.5  1  Ras             Ras family
     0.0015   18.4   0.0     0.0028   17.5   0.0    1.4  1  COR             C-terminal of Roc, COR, domain
      0.003   17.5   0.3     0.0098   15.8   0.0    2.0  2  NACHT           NACHT domain
     0.0042   16.5   0.0      0.018   14.4   0.0    2.0  1  ADPrib_exo_Tox  ADP-ribosyltransferase exoenzyme
  ------ inclusion threshold ------
      0.029   14.9  34.9         17    6.4   0.3   11.7 13  LRR_1           Leucine Rich Repeat
      0.079   12.4   0.0       0.41   10.1   0.0    2.2  2  Arf             ADP-ribosylation factor family
        0.6    9.6   3.2       0.51    9.8   0.4    2.4  2  LRR_9           Leucine-rich repeat


Domain annotation for each model (and alignments):
>> LRR_4  Leucine Rich repeats (2 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.4   1.7e-05     0.025       3      43 ..    1379    1421 ..    1377    1422 .. 0.81
   2 !   16.1   0.7   7.8e-06     0.012       2      35 ..    1437    1476 ..    1436    1487 .. 0.79
   3 ?    5.9   1.2     0.012        18       3      33 ..    1790    1828 ..    1788    1860 .. 0.78
   4 ?    0.3   0.0      0.71   1.1e+03      21      36 ..    1942    1956 ..    1912    1965 .. 0.71
   5 !   12.6   0.2   9.6e-05      0.14       3      39 ..    2109    2149 ..    2107    2157 .. 0.82
   6 !   16.6   3.7   5.3e-06     0.008       2      40 ..    2135    2173 ..    2134    2177 .. 0.85
   7 !   21.4   1.0   1.6e-07   0.00024       2      43 ..    2182    2220 ..    2182    2223 .. 0.86

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 1.7e-05
                  --EEE--SS---E-S-.......HHH-TT--EEE-.-S-----GGGGX CS
       LRR_4    3 LevLdLsnNqltdipl.......leklpnLkeLdLsgNnlitdldeLk 43  
                  L+ LdLs+N +  ++        l+++  Lk+LdLs+N    +ld+Lk
  KOO25334.1 1379 LQMLDLSGNGVG-LEDgmgivnlLRSCAALKSLDLSDN----SLDTLK 1421
                  99********77.4444776665889************....999886 PP

  == domain 2  score: 16.1 bits;  conditional E-value: 7.8e-06
                  S--EEE--SS---E-S-.......HHH-TT--EEE-.-S-- CS
       LRR_4    2 nLevLdLsnNqltdipl.......leklpnLkeLdLsgNnl 35  
                  +L++L+LsnN+l + ++       l+++ +L++L Ls+N +
  KOO25334.1 1437 KLTELNLSNNRLGS-DGcksictaLQGCISLRYLGLSHNQP 1476
                  8**********995.355666555558**********9944 PP

  == domain 3  score: 5.9 bits;  conditional E-value: 0.012
                  --EEE--SS---E-S-HH..H.-TT.....--EEE-.-S CS
       LRR_4    3 LevLdLsnNqltdiplle..k.lpn.....LkeLdLsgN 33  
                   ++L Ls+N l+d       + l n     L++LdLs+N
  KOO25334.1 1790 ITSLILSSNGLSDETARVmhQlLQNnevctLTSLDLSHN 1828
                  688999999999988844443344445666999999998 PP

  == domain 4  score: 0.3 bits;  conditional E-value: 0.71
                  H-TT--EEE-.-S--- CS
       LRR_4   21 klpnLkeLdLsgNnli 36  
                   +++ + +dLsgN +i
  KOO25334.1 1942 TNTSITLIDLSGN-KI 1956
                  4677777888777.44 PP

  == domain 5  score: 12.6 bits;  conditional E-value: 9.6e-05
                  --EEE--SS---E-S-..HH...H-TT--EEE-.-S-----G CS
       LRR_4    3 LevLdLsnNqltdipl..le...klpnLkeLdLsgNnlitdl 39  
                  Le+L L  N l d ++  l    kl nL++L+L gN ++t +
  KOO25334.1 2109 LESLTLDKNALADAESalLTpigKLYNLRSLSLCGN-RLTEV 2149
                  999**********99998335657*********999.77666 PP

  == domain 6  score: 16.6 bits;  conditional E-value: 5.3e-06
                  S--EEE--SS---E-S-.HHH-TT--EEE-.-S-----GG CS
       LRR_4    2 nLevLdLsnNqltdipl.leklpnLkeLdLsgNnlitdld 40  
                  nL++L+L +N+lt++p+ +++l +L+eL L + n+++ l+
  KOO25334.1 2135 NLRSLSLCGNRLTEVPSsIGSLRSLQEL-LLRSNQLNELP 2173
                  9****************6557*******.86766887774 PP

  == domain 7  score: 21.4 bits;  conditional E-value: 1.6e-07
                  S--EEE--SS---E-S-.HHH-TT--EEE-.-S-----GGGGX CS
       LRR_4    2 nLevLdLsnNqltdipl.leklpnLkeLdLsgNnlitdldeLk 43  
                  +Le+LdL +Nqlt +p  +++l  Lk+Ld+s+N    +l+eL+
  KOO25334.1 2182 SLENLDLKGNQLTYLPDsIGQLRTLKSLDVSEN----KLTELP 2220
                  69***************6667************....555554 PP

>> LRR_8  Leucine rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.9   0.1      0.13   1.9e+02      46      59 ..    1374    1387 ..    1370    1389 .. 0.73
   2 !   12.9   5.7   4.7e-05      0.07       3      60 ..    1407    1475 ..    1405    1475 .. 0.76
   3 ?    3.1   2.4     0.054        80      26      61 .]    1819    1855 ..    1788    1855 .. 0.67
   4 ?    2.5   0.0     0.082   1.2e+02      22      43 ..    1941    1962 ..    1937    1967 .. 0.81
   5 !   24.1   3.5   1.5e-08   2.2e-05       2      61 .]    2108    2169 ..    2107    2169 .. 0.90
   6 !   32.2   6.8   4.4e-11   6.6e-08       2      61 .]    2135    2193 ..    2134    2193 .. 0.97
   7 !   25.1   2.5   7.2e-09   1.1e-05       2      61 .]    2182    2239 ..    2181    2239 .. 0.97

  Alignments for each domain:
  == domain 1  score: 1.9 bits;  conditional E-value: 0.13
                  TT--S-.EEE--SS CS
       LRR_8   46 sgLpsLrsLdLsgN 59  
                  +g + L++LdLsgN
  KOO25334.1 1374 EGNETLQMLDLSGN 1387
                  56677888888888 PP

  == domain 2  score: 12.9 bits;  conditional E-value: 4.7e-05
                  -SEEE-TTS--SEE-TTSST.......T-TT--EEE--SS--.....-GGGGGGGTT--S-.EEE--SS- CS
       LRR_8    3 LtsLdLsnNrltslddeaFk.......glsnLkvLdLsnNll.....ttlspgafsgLpsLrsLdLsgNr 60  
                  L+sLdLs+N+l  l+ ++ +       g+ +L++L+LsnN+l     +++   a++g+ sLr+L Ls+N+
  KOO25334.1 1407 LKSLDLSDNSLDTLKRSQLSavcrslgGNVKLTELNLSNNRLgsdgcKSI-CTALQGCISLRYLGLSHNQ 1475
                  89999999999999998654222222278999********9844333455.47999************97 PP

  == domain 3  score: 3.1 bits;  conditional E-value: 0.054
                  T--EEE--SS---G.GGGGGGTT--S-.EEE--SS-- CS
       LRR_8   26 nLkvLdLsnNlltt.lspgafsgLpsLrsLdLsgNrL 61  
                   L++LdLs+N ++  +  +a+   + L++L++ g+ L
  KOO25334.1 1819 TLTSLDLSHNIINAgMLSRAIKRNTTLKFLNVKGCGL 1855
                  4999******999886679999999999999988865 PP

  == domain 4  score: 2.5 bits;  conditional E-value: 0.082
                  TT-TT--EEE--SS---GGGGG CS
       LRR_8   22 kglsnLkvLdLsnNllttlspg 43  
                  +++++ + +dLs N+++t s+g
  KOO25334.1 1941 STNTSITLIDLSGNKIHTSSEG 1962
                  5567889999999999998865 PP

  == domain 5  score: 24.1 bits;  conditional E-value: 1.5e-08
                  T-SEEE-TTS--SEE-TTSST...T-TT--EEE--SS---GGGGGGGTT--S-.EEE--SS-- CS
       LRR_8    2 nLtsLdLsnNrltslddeaFk...glsnLkvLdLsnNllttlspgafsgLpsLrsLdLsgNrL 61  
                  +L+sL L++N l + +    +   +l nL++L+L  N+lt + p ++ +L+sL++L L++N+L
  KOO25334.1 2108 TLESLTLDKNALADAESALLTpigKLYNLRSLSLCGNRLTEV-PSSIGSLRSLQELLLRSNQL 2169
                  799999****999999987643327*****************.9*****************98 PP

  == domain 6  score: 32.2 bits;  conditional E-value: 4.4e-11
                  T-SEEE-TTS--SEE-TTSSTT-TT--EEE--SS---GGGGGGGTT--S-.EEE--SS-- CS
       LRR_8    2 nLtsLdLsnNrltslddeaFkglsnLkvLdLsnNllttlspgafsgLpsLrsLdLsgNrL 61  
                  nL+sL+L+ Nrlt+++ +  + l++L++L L++N+l+ l + ++  L sL+ LdL gN+L
  KOO25334.1 2135 NLRSLSLCGNRLTEVPSSIGS-LRSLQELLLRSNQLNELPNASIGLLGSLENLDLKGNQL 2193
                  8**************998888.************************************98 PP

  == domain 7  score: 25.1 bits;  conditional E-value: 7.2e-09
                  T-SEEE-TTS--SEE-TTSSTT-TT--EEE--SS---GGGGGGGTT--S-.EEE--SS-- CS
       LRR_8    2 nLtsLdLsnNrltslddeaFkglsnLkvLdLsnNllttlspgafsgLpsLrsLdLsgNrL 61  
                  +L++LdL  N+lt l+d+  + l+ Lk+Ld s+N+lt l p +f  L+   +L +s+N+L
  KOO25334.1 2182 SLENLDLKGNQLTYLPDSIGQ-LRTLKSLDVSENKLTEL-PASFGLLRDTLKLSVSRNPL 2239
                  69****************999.*****************.9*****************97 PP

>> Roc  Ras of Complex, Roc, domain of DAPkinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.5   0.0   1.5e-12   2.3e-09       1     120 []    2273    2392 ..    2273    2392 .. 0.81

  Alignments for each domain:
  == domain 1  score: 37.5 bits;  conditional E-value: 1.5e-12
                  EEEEESSTTSSHHHHHHCHCT-CCC-EE..ETTTTEEEEEEECGGSGGCTTBTTTTCEEEEEEEE-SGGCTTTT-HHHHCTSCEEEEEEE......G CS
         Roc    1 KvvlvGdsgvGKtsllkrfvedkfseke..kstigvdfltkevtkikgvendkkvkkvklniWDtaGqerfrslhplylreaalailvyd......s 89  
                  ++vl+G + +GKtsl + + ++  ++ +  + ti++d++t  +    g    +  ++v l++WD+aGq ++ +  + y+   +l++l +       +
  KOO25334.1 2273 RLVLLGAGLAGKTSLQRGLRHGAARPAKldERTIQLDIHTLPL----G----SGAEQVVLSMWDLAGQPEYAAGLQPYIVPGSLYLLAVPaqlcadE 2361
                  589******************9998775227788888876544....2....2246899***************************98753333213 PP

                  HHHHCHHHHHHHHHHHCSSS-EEEEEE-TTT CS
         Roc   90 rssenlkeWlkelkkvagkspvilvgnkiDl 120 
                  +  + l +Wl+ l++ a++++v  v +++D+
  KOO25334.1 2362 HYPDVLGRWLDYLQAGAPEAVVQAVLTHCDE 2392
                  33366799*********************95 PP

>> LRR_6  Leucine Rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.5   0.1    0.0066       9.9       2      23 ..    1376    1397 ..    1375    1398 .. 0.87
   2 ?    4.2   0.2     0.035        53       5      16 ..    1407    1418 ..    1403    1419 .. 0.85
   3 !   16.6   0.9   3.7e-06    0.0056       2      24 .]    1435    1457 ..    1434    1457 .. 0.95
   4 ?    3.5   0.0     0.063        94       2      14 ..    1463    1475 ..    1462    1477 .. 0.91
   5 ?   -2.4   0.3       4.9   7.3e+03       2      10 ..    1635    1643 ..    1634    1646 .. 0.82
   6 ?   -2.4   0.1       4.7     7e+03       1      11 [.    1660    1670 ..    1660    1671 .. 0.87
   7 ?   -2.0   0.0       3.7   5.5e+03       2      16 ..    1724    1738 ..    1723    1740 .. 0.87
   8 ?   -0.6   0.0       1.2   1.8e+03       5      23 ..    1760    1778 ..    1758    1779 .. 0.83
   9 !    6.2   0.0    0.0085        13       2      18 ..    1787    1803 ..    1786    1805 .. 0.93
  10 !    6.6   0.4    0.0061       9.2       3      13 ..    1818    1828 ..    1818    1832 .. 0.90
  11 !    6.0   0.1    0.0095        14       2      21 ..    1842    1861 ..    1841    1864 .. 0.87
  12 !   11.6   0.1   0.00015      0.22       1      23 [.    1914    1936 ..    1914    1936 .. 0.98
  13 ?    4.0   0.1     0.041        62       1      16 [.    1942    1957 ..    1942    1966 .. 0.83
  14 ?    2.4   0.0      0.14   2.1e+02       3      15 ..    1997    2009 ..    1995    2012 .. 0.87
  15 ?   -2.6   0.0       5.4     8e+03       3      17 ..    2107    2121 ..    2106    2122 .. 0.88
  16 ?   -2.3   0.5       4.4   6.6e+03       3      15 ..    2157    2169 ..    2155    2170 .. 0.87
  17 ?    2.7   0.1      0.11   1.7e+02       4      16 ..    2182    2194 ..    2182    2195 .. 0.91
  18 ?    5.9   0.1      0.01        15       3      16 ..    2204    2217 ..    2202    2217 .. 0.89

  Alignments for each domain:
  == domain 1  score: 6.5 bits;  conditional E-value: 0.0066
       LRR_6    2 nthLteLdLsgNdIgDeGaeaL 23  
                  n +L+ LdLsgN++g e ++ +
  KOO25334.1 1376 NETLQMLDLSGNGVGLEDGMGI 1397
                  889************9988765 PP

  == domain 2  score: 4.2 bits;  conditional E-value: 0.035
       LRR_6    5 LteLdLsgNdIg 16  
                  L++LdLs+N ++
  KOO25334.1 1407 LKSLDLSDNSLD 1418
                  9********876 PP

  == domain 3  score: 16.6 bits;  conditional E-value: 3.7e-06
       LRR_6    2 nthLteLdLsgNdIgDeGaeaLa 24  
                  n +LteL+Ls N +g +G+++++
  KOO25334.1 1435 NVKLTELNLSNNRLGSDGCKSIC 1457
                  789******************98 PP

  == domain 4  score: 3.5 bits;  conditional E-value: 0.063
       LRR_6    2 nthLteLdLsgNd 14  
                  + +L++L Ls+N+
  KOO25334.1 1463 CISLRYLGLSHNQ 1475
                  789*********7 PP

  == domain 5  score: -2.4 bits;  conditional E-value: 4.9
       LRR_6    2 nthLteLdL 10  
                  n++Lt+L +
  KOO25334.1 1635 NRTLTSLTM 1643
                  9*****976 PP

  == domain 6  score: -2.4 bits;  conditional E-value: 4.7
       LRR_6    1 snthLteLdLs 11  
                  sn++L+ L L+
  KOO25334.1 1660 SNSTLEILRLQ 1670
                  69******997 PP

  == domain 7  score: -2.0 bits;  conditional E-value: 3.7
       LRR_6    2 nthLteLdLsgNdIg 16  
                  n ++++L Ls  ++g
  KOO25334.1 1724 NKTVQTLKLSKTGLG 1738
                  899*******99887 PP

  == domain 8  score: -0.6 bits;  conditional E-value: 1.2
       LRR_6    5 LteLdLsgNdIgDeGaeaL 23  
                  L  LdLs  ++gD G+ ++
  KOO25334.1 1760 LYQLDLSEMELGDNGGRKI 1778
                  5569999999******998 PP

  == domain 9  score: 6.2 bits;  conditional E-value: 0.0085
       LRR_6    2 nthLteLdLsgNdIgDe 18  
                  ++ +t+L Ls+N+++De
  KOO25334.1 1787 CRRITSLILSSNGLSDE 1803
                  7899************8 PP

  == domain 10  score: 6.6 bits;  conditional E-value: 0.0061
       LRR_6    3 thLteLdLsgN 13  
                  ++Lt+LdLs+N
  KOO25334.1 1818 CTLTSLDLSHN 1828
                  79********* PP

  == domain 11  score: 6.0 bits;  conditional E-value: 0.0095
       LRR_6    2 nthLteLdLsgNdIgDeGae 21  
                  nt+L+ L+++g++++ e ++
  KOO25334.1 1842 NTTLKFLNVKGCGLSEESLS 1861
                  9************9988776 PP

  == domain 12  score: 11.6 bits;  conditional E-value: 0.00015
       LRR_6    1 snthLteLdLsgNdIgDeGaeaL 23  
                  +nt+L+++++ g++I+ eGa+aL
  KOO25334.1 1914 HNTSLKSVSILGCGIDAEGAKAL 1936
                  8********************98 PP

  == domain 13  score: 4.0 bits;  conditional E-value: 0.041
       LRR_6    1 snthLteLdLsgNdIg 16  
                  +nt++t  dLsgN+I 
  KOO25334.1 1942 TNTSITLIDLSGNKIH 1957
                  599***********96 PP

  == domain 14  score: 2.4 bits;  conditional E-value: 0.14
       LRR_6    3 thLteLdLsgNdI 15  
                  ++L++L+L+ +++
  KOO25334.1 1997 STLKYLNLAECGL 2009
                  79*******9987 PP

  == domain 15  score: -2.6 bits;  conditional E-value: 5.4
       LRR_6    3 thLteLdLsgNdIgD 17  
                  ++L++L L  N + D
  KOO25334.1 2107 STLESLTLDKNALAD 2121
                  79*********9987 PP

  == domain 16  score: -2.3 bits;  conditional E-value: 4.4
       LRR_6    3 thLteLdLsgNdI 15  
                  ++L+eL L++N++
  KOO25334.1 2157 RSLQELLLRSNQL 2169
                  79*********98 PP

  == domain 17  score: 2.7 bits;  conditional E-value: 0.11
       LRR_6    4 hLteLdLsgNdIg 16  
                  +L+ LdL+gN+++
  KOO25334.1 2182 SLENLDLKGNQLT 2194
                  6999*******97 PP

  == domain 18  score: 5.9 bits;  conditional E-value: 0.01
       LRR_6    3 thLteLdLsgNdIg 16  
                  ++L++Ld+s N+++
  KOO25334.1 2204 RTLKSLDVSENKLT 2217
                  89*********986 PP

>> ART  NAD:arginine ADP-ribosyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.2   0.0       5.7   8.5e+03      35      66 ..    1491    1522 ..    1478    1522 .. 0.76
   2 !   21.1   0.0     1e-07   0.00015      52     195 ..    2989    3136 ..    2964    3141 .. 0.72

  Alignments for each domain:
  == domain 1  score: -4.2 bits;  conditional E-value: 5.7
         ART   35 qalaesweqakkkwkerkaklelpegfkdehg 66  
                     + s+++a +kw + +ak+++++ + +++g
  KOO25334.1 1491 SLTDISIVEADSKWLDSRAKDNIGQALLQNEG 1522
                  34456899************999999888775 PP

  == domain 2  score: 21.1 bits;  conditional E-value: 1e-07
         ART   52 kaklelpegfkdehgiAllaYtssselyrelneavreaGrsreeylsnfdfkalhfyLtraLqlLrk.....dsqrcsqvyRgvk....glrfsrak 139 
                  k+ +++++++ + h +Al +Y++s  ++r++n+ +re        ++++++ al+  L  ++  Lr+     d qr ++ +Rg++      +  ++ 
  KOO25334.1 2989 KHPIAVGARLDRAHVLALRLYSTS--VFRSINRPLRE--------ARKHPYPALVSRLVDGIVRLRAyqsqsDVQRTYEFWRGMRveasD-E--FFA 3072
                  6778899*****************..**********7........8999****************9965545556666688888865531.2..222 PP

         ART  140 kgksvRfgqFtss.slkkkvae......efgqdtllsiktc...lgvpIkefskfpsedevLIppf 195 
                  +g +  + +F  +  +++kvae        +  +l+ ++      g++I  +s+fp+e e L pp 
  KOO25334.1 3073 RG-TTEL-AFSPTmRTERKVAEsmvtkdGANASVLIRLQLTmkeAGADISWLSVFPGEGEFLFPPG 3136
                  23.2222.33332134445555444433223344444443311269******************95 PP

>> Ras  Ras family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.0   0.0   5.4e-07   0.00081       1      76 [.    2273    2350 ..    2273    2392 .. 0.80

  Alignments for each domain:
  == domain 1  score: 19.0 bits;  conditional E-value: 5.4e-07
                  EEEEEESTTSSHHHHH..HHHHHSSCSSSCTTTSSEEEEEEEEEETTEEEEEEEEEETTSGGGHHHHHHHHTTESEEE CS
         Ras    1 KlvlvGdsavGKtsll..lrfvkdkFkeeyesTigvdfytkeievdgkevkleiwDTAGqeefkslrelyyrdaegil 76  
                  +lvl+G +  GKtsl   lr+   +  +  e Ti  d +t  +    ++v l++wD AGq e+ +  + y+  ++  l
  KOO25334.1 2273 RLVLLGAGLAGKTSLQrgLRHGAARPAKLDERTIQLDIHTLPLGSGAEQVVLSMWDLAGQPEYAAGLQPYIVPGSLYL 2350
                  58*************8445777778888999********************************987766666555555 PP

>> COR  C-terminal of Roc, COR, domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5   0.0   1.8e-06    0.0028      90     193 ..    2627    2742 ..    2615    2743 .. 0.90

  Alignments for each domain:
  == domain 1  score: 17.5 bits;  conditional E-value: 1.8e-06
         COR   90 kkGilkredlekiwkekeypaeehdlllelmekfelcyelee..eedtylvpqlLpeerpe.........leweeeeklelryqy.eflPkglisrl 174 
                   kG l++e l  +w+     +++   +l ++    + +  e+  + +++++p  Lpe++p+          + +  e+l ++y + ++ P+g+ +rl
  KOO25334.1 2627 GKGDLREELLPLLWEPVGLHEDDYGSVLMMLCASGVLFLAEHtqQGRKWIMPMRLPETQPAeqlakwhrlRTSPGIEQLGVVYPLgALAPPGIAERL 2723
                  468899999999****9999******************999888899*******************999855677899*******9999******** PP

         COR  175 ivrlhkfiedelvWrsGvv 193 
                  + +l  f + + +W+ G +
  KOO25334.1 2724 MSHLYGFGKYHAFWKGGTL 2742
                  ****************987 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.0   6.5e-06    0.0098      81     160 ..     734     804 ..     643     809 .. 0.75
   2 ?   -3.4   0.2       5.2   7.7e+03     106     156 ..    1625    1675 ..    1617    1676 .. 0.85

  Alignments for each domain:
  == domain 1  score: 15.8 bits;  conditional E-value: 6.5e-06
                 CCEEEEEE-STT-SS-TCH.........HHHHHCTTTTT.--EEEEEEECCCHHHHCTTSSCE..EEEE--TCCHHHHHHH CS
       NACHT  81 erlLlilDglDelvtdlgqkekqpvrtlLselirkkllp.easllltvrpralrdleeqleeaivlevegfsesrrkqlvr 160
                 + l++++Dg+De+++   +          +e i  +l+p +++ll+t+rp++   ++ +l   +v+ +++++es+ ++++ 
  KOO25334.1 734 RALVILVDGVDEAASLRLH---------VEEFIHYELVPsGNRLLVTSRPEGI-TMPLYLTNFAVVSLRPLTESQQRRVAQ 804
                 3455999*******95555.........6666666655428************.9********************999875 PP

  == domain 2  score: -3.4 bits;  conditional E-value: 5.2
                  ...HHHHHCTTTTT--EEEEEEECCCHHHHCTTSSCE..EEEE--TCCHHH CS
       NACHT  106 rtlLselirkkllpeasllltvrpralrdleeqleeaivlevegfsesrrk 156 
                    lL++ +r++   ++  + +++++  + l+e+l++   le+  ++ s++k
  KOO25334.1 1625 FMLLAGVLRANRTLTSLTMNSLKTEHIEPLAEGLRSNSTLEILRLQSSSNK 1675
                  56899999999999999999999999999******9999999999887765 PP

>> ADPrib_exo_Tox  ADP-ribosyltransferase exoenzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.4   0.0   1.2e-05     0.018      20     167 ..    3002    3139 ..    2993    3142 .. 0.80

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 1.2e-05
                      HHHHHHHHCCTTHHHHHHHHHCTTTSGGGS-SCHHHHHHHHHHHHCCT-B-SS-EEEEEEE-GGGG-HHHHTT-HHHHHHHHHHHTT-EEEES CS
  ADPrib_exo_Tox   20 ekeaireYtgsgysdINnyLrqnkgerndldkselekkiknldsaleksripeniivYRrvdeaelgleldskneekvsefeakvkgkvfker 112 
                       + a+r Y +s   +IN++Lr+ +++ ++ + s l + i +l +  ++s ++ +   +R+                 v++ ++ +  +  +e 
      KOO25334.1 3002 HVLALRLYSTSVFRSINRPLREARKHPYPALVSRLVDGIVRLRAYQSQSDVQRTYEFWRGM---------------RVEA-SDEFFARGTTEL 3078
                      5668999999999999999999999999888899999999999998999999999999995...............3433.334556778889 PP

                      S-EEEESSSS.......SCCCTTT.....SEEEEEEE-TTSBEEE-CCCSSSGCG-EEEE-TTEEE CS
  ADPrib_exo_Tox  113 gyvSTslvkd......taasfggr.....eilleltvpkgsegayisplslypgeaEvLlprglty 167 
                      +++ T  ++       +      +     ++l++l+++  + ga+is ls +pge E L+p g+ +
      KOO25334.1 3079 AFSPTMRTERkvaesmV-----TKdganaSVLIRLQLTMKEAGADISWLSVFPGEGEFLFPPGTYV 3139
                      99999888876444432.....333444589******************************98865 PP

>> LRR_1  Leucine Rich Repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.0         4   5.9e+03       2      11 ..    1379    1388 ..    1378    1395 .. 0.84
   2 ?    5.6   0.1     0.022        33       2      16 ..    1407    1420 ..    1406    1429 .. 0.77
   3 ?    6.4   0.3     0.012        17       1      17 [.    1437    1453 ..    1437    1463 .. 0.77
   4 ?   -0.5   0.0       2.2   3.3e+03       1      12 [.    1465    1476 ..    1465    1491 .. 0.77
   5 ?    3.7   0.0     0.094   1.4e+02       2      13 ..    1820    1832 ..    1819    1842 .. 0.74
   6 ?   -1.3   0.0         4   5.9e+03       2      13 ..    1845    1856 ..    1844    1864 .. 0.77
   7 ?   -2.4   0.0       9.3   1.4e+04       5      18 ..    1949    1961 ..    1946    1966 .. 0.70
   8 ?    0.2   0.0       1.3   1.9e+03       2      18 ..    1999    2015 ..    1998    2018 .. 0.80
   9 ?    5.2   0.3      0.03        44       1      21 [.    2135    2154 ..    2135    2156 .. 0.79
  10 ?    1.6   1.1      0.44   6.5e+02       1      20 [.    2158    2177 ..    2158    2180 .. 0.87
  11 ?    1.6   0.1      0.44   6.6e+02       1      19 [.    2182    2199 ..    2182    2203 .. 0.76
  12 ?    3.3   0.0      0.13   1.9e+02       2      20 ..    2206    2223 ..    2205    2226 .. 0.81
  13 ?   -1.9   0.0       6.1   9.2e+03       5      19 ..    2232    2245 ..    2230    2247 .. 0.81

  Alignments for each domain:
  == domain 1  score: -1.3 bits;  conditional E-value: 4
       LRR_1    2 LrhLdLsnnp 11  
                  L+ LdLs+n 
  KOO25334.1 1379 LQMLDLSGNG 1388
                  899*****96 PP

  == domain 2  score: 5.6 bits;  conditional E-value: 0.022
       LRR_1    2 LrhLdLsnnpllglp 16  
                  L++LdLs+n+l+  +
  KOO25334.1 1407 LKSLDLSDNSLD-TL 1420
                  9*********93.33 PP

  == domain 3  score: 6.4 bits;  conditional E-value: 0.012
       LRR_1    1 nLrhLdLsnnpllglpp 17  
                  +L++L+Lsnn+l++ + 
  KOO25334.1 1437 KLTELNLSNNRLGSDGC 1453
                  79*********955444 PP

  == domain 4  score: -0.5 bits;  conditional E-value: 2.2
       LRR_1    1 nLrhLdLsnnpl 12  
                  +Lr+L Ls+n++
  KOO25334.1 1465 SLRYLGLSHNQP 1476
                  69********97 PP

  == domain 5  score: 3.7 bits;  conditional E-value: 0.094
       LRR_1    2 LrhLdLsnnpl.l 13  
                  L++LdLs+n++  
  KOO25334.1 1820 LTSLDLSHNIInA 1832
                  99*******9744 PP

  == domain 6  score: -1.3 bits;  conditional E-value: 4
       LRR_1    2 LrhLdLsnnpll 13  
                  L+ L++ ++ l+
  KOO25334.1 1845 LKFLNVKGCGLS 1856
                  9********984 PP

  == domain 7  score: -2.4 bits;  conditional E-value: 9.3
       LRR_1    5 LdLsnnpllglppn 18  
                  +dLs+n + + +++
  KOO25334.1 1949 IDLSGNKI-HTSSE 1961
                  8*****98.55555 PP

  == domain 8  score: 0.2 bits;  conditional E-value: 1.3
       LRR_1    2 LrhLdLsnnpllglppn 18  
                  L++L+L  + l g +++
  KOO25334.1 1999 LKYLNLAECGLAGSSSW 2015
                  9******9999766665 PP

  == domain 9  score: 5.2 bits;  conditional E-value: 0.03
       LRR_1    1 nLrhLdLsnnpllglppnsfq 21  
                  nLr+L L++n+l+   p+s+ 
  KOO25334.1 2135 NLRSLSLCGNRLT-EVPSSIG 2154
                  8***********5.6666655 PP

  == domain 10  score: 1.6 bits;  conditional E-value: 0.44
       LRR_1    1 nLrhLdLsnnpllglppnsf 20  
                  +L++L L++n+l  lp++s+
  KOO25334.1 2158 SLQELLLRSNQLNELPNASI 2177
                  69**********88888886 PP

  == domain 11  score: 1.6 bits;  conditional E-value: 0.44
       LRR_1    1 nLrhLdLsnnpllglppns 19  
                  +L+ LdL +n+l+  +p+s
  KOO25334.1 2182 SLENLDLKGNQLT-YLPDS 2199
                  699*********5.55554 PP

  == domain 12  score: 3.3 bits;  conditional E-value: 0.13
       LRR_1    2 LrhLdLsnnpllglppnsf 20  
                  L++Ld+s n l+  +p+sf
  KOO25334.1 2206 LKSLDVSENKLT-ELPASF 2223
                  9**********5.666665 PP

  == domain 13  score: -1.9 bits;  conditional E-value: 6.1
       LRR_1    5 LdLsnnpllglppns 19  
                  L +s+npl + pp s
  KOO25334.1 2232 LSVSRNPL-QRPPLS 2245
                  899*****.888765 PP

>> Arf  ADP-ribosylation factor family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.0       2.1   3.2e+03      90     118 ..    1140    1168 ..    1138    1173 .. 0.85
   2 ?   10.1   0.0   0.00027      0.41      10      69 ..    2267    2333 ..    2257    2342 .. 0.84

  Alignments for each domain:
  == domain 1  score: -2.6 bits;  conditional E-value: 2.1
                  ETT-CTTHHHHHHHHHHHCTSGCCTTSEE CS
         Arf   90 DsadreRleeakeeLkalleeeelkeval 118 
                  Dsa r+R++ + ++L+ l  ee +  v+ 
  KOO25334.1 1140 DSALRRRIKRTLQKLEPLKGEESVVAVHA 1168
                  99**************9999998877765 PP

  == domain 2  score: 10.1 bits;  conditional E-value: 0.00027
                  T.TTEEEEEEEESTTSSHHHHHHHHHHSSCEE...CSSSSSEEEEEEEE....TTEEEEEEEE-SSG CS
         Arf   10 lkkkelrilllGLDnaGKtTilkklkleelvt...tvPTigfnveelei....knlkftvwDvGGqe 69  
                  ++++ +r++llG   aGKt +   l+++          Ti  ++++l      +++ +++wD+ Gq 
  KOO25334.1 2267 TTSRAARLVLLGAGLAGKTSLQRGLRHGAARPaklDERTIQLDIHTLPLgsgaEQVVLSMWDLAGQP 2333
                  45899****************99999988765334679*********98777789**********96 PP

>> LRR_9  Leucine-rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.2       3.2   4.8e+03      65     121 ..    1437    1498 ..    1397    1501 .. 0.54
   2 ?    9.8   0.4   0.00034      0.51      47     126 ..    2117    2194 ..    2092    2229 .. 0.79

  Alignments for each domain:
  == domain 1  score: -3.1 bits;  conditional E-value: 3.2
       LRR_9   65 rlktlllnnnri.....vriaegleevlPnleelvltnne.lqeladldPlaslkklellsll 121 
                  +l  l l+nnr+       i   l+ ++ +l+ l l++n+ ++e+a  + l + k+l+ +s++
  KOO25334.1 1437 KLTELNLSNNRLgsdgcKSICTALQGCI-SLRYLGLSHNQpMREMALPNLLQTHKSLTDISIV 1498
                  3556667777763222123444444443.5667777777667777766667777777777776 PP

  == domain 2  score: 9.8 bits;  conditional E-value: 0.00034
       LRR_9   47 idlsdndirkldgfPllkrlktlllnnnrivriaegleevlPnleelvltnnelqeladldPlaslkklellsllknpvt 126 
                    l+d +   l  +  l  l++l+l  nr++ +   ++ +l +l+el+l +n+l+el +   +  l +le+l l  n +t
  KOO25334.1 2117 NALADAESALLTPIGKLYNLRSLSLCGNRLTEVPSSIG-SLRSLQELLLRSNQLNELPN-ASIGLLGSLENLDLKGNQLT 2194
                  4567777777888888999**************99998.5899**************88.56667777777777766655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (3177 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       575  (0.0320709); expected 358.6 (0.02)
Passed bias filter:                      439  (0.0244855); expected 358.6 (0.02)
Passed Vit filter:                        50  (0.00278878); expected 17.9 (0.001)
Passed Fwd filter:                        13  (0.000725082); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 1.38u 0.31s 00:00:01.69 Elapsed: 00:00:00.51
# Mc/sec: 18578.81
//
Query:       KOO25335.1  [L=96]
Description: hypothetical protein Ctob_004203 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (96 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       377  (0.0210274); expected 358.6 (0.02)
Passed bias filter:                      306  (0.0170673); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.27s 00:00:00.62 Elapsed: 00:00:00.41
# Mc/sec: 708.72
//
Query:       KOO25336.1  [L=500]
Description: hypothetical protein Ctob_001205 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (500 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       375  (0.0209158); expected 358.6 (0.02)
Passed bias filter:                      272  (0.015171); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.50u 0.24s 00:00:00.74 Elapsed: 00:00:00.40
# Mc/sec: 3747.07
//
Query:       KOO25337.1  [L=136]
Description: hypothetical protein Ctob_001204 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (136 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       273  (0.0152267); expected 358.6 (0.02)
Passed bias filter:                      253  (0.0141112); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.23s 00:00:00.59 Elapsed: 00:00:00.38
# Mc/sec: 1078.34
//
Query:       KOO25338.1  [L=757]
Description: hypothetical protein Ctob_001203 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    4.7e-11   41.4   0.2     0.0001   21.6   0.2    2.6  2  EF-hand_1    EF hand
    1.3e-10   40.4   0.0    0.00057   19.6   0.1    2.7  2  EF-hand_6    EF-hand domain
    2.8e-08   34.1   0.2    6.9e-08   32.8   0.2    1.6  1  EF-hand_7    EF-hand domain pair
    2.1e-06   27.0   0.8     0.0053   16.2   0.1    2.8  3  EF-hand_5    EF hand
    1.6e-05   24.6   0.3     0.0053   16.6   0.2    2.9  3  EF-hand_8    EF-hand domain pair
     0.0057   17.2   0.0      0.024   15.1   0.0    1.9  2  Metallophos  Calcineurin-like phosphoesterase


Domain annotation for each model (and alignments):
>> EF-hand_1  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   0.0   8.4e-07    0.0025       4      27 ..     610     633 ..     608     635 .. 0.90
   2 !   21.6   0.2   3.4e-08    0.0001       3      29 .]     650     676 ..     648     676 .. 0.94

  Alignments for each domain:
  == domain 1  score: 17.2 bits;  conditional E-value: 8.4e-07
                 HHHHHHTTTSSSEEEHHHHHHHHH CS
   EF-hand_1   4 eiFrefDkDgdGkIdfeEfkellk 27 
                  +F+++D+Dgd ++++eE+ ++++
  KOO25338.1 610 TLFKLADVDGDQTVTKEELTSAIT 633
                 58*****************99986 PP

  == domain 2  score: 21.6 bits;  conditional E-value: 3.4e-08
                 HHHHHHHTTTSSSEEEHHHHHHHHHHH CS
   EF-hand_1   3 keiFrefDkDgdGkIdfeEfkellkkl 29 
                 +e+Fr++D+D++  I+++E+k ++kkl
  KOO25338.1 650 DELFRLIDTDNSNSISLDELKCYFKKL 676
                 79*********************9986 PP

>> EF-hand_6  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.8   0.0   7.5e-07    0.0022       4      28 ..     610     634 ..     607     642 .. 0.89
   2 !   19.6   0.1   1.9e-07   0.00057       4      28 ..     651     675 ..     646     682 .. 0.92

  Alignments for each domain:
  == domain 1  score: 17.8 bits;  conditional E-value: 7.5e-07
   EF-hand_6   4 eaFklfDkdgdGkidaeElrkalrk 28 
                  +Fkl D+dgd ++++eEl +a+++
  KOO25338.1 610 TLFKLADVDGDQTVTKEELTSAITQ 634
                 68******************99985 PP

  == domain 2  score: 19.6 bits;  conditional E-value: 1.9e-07
   EF-hand_6   4 eaFklfDkdgdGkidaeElrkalrk 28 
                 e+F+l+D+d++++i+ +El+  ++k
  KOO25338.1 651 ELFRLIDTDNSNSISLDELKCYFKK 675
                 89******************99984 PP

>> EF-hand_7  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.8   0.2   2.3e-11   6.9e-08       5      70 ..     609     673 ..     605     674 .. 0.81

  Alignments for each domain:
  == domain 1  score: 32.8 bits;  conditional E-value: 2.3e-11
   EF-hand_7   5 keaFkelDtdgdgyldkeellrllrkifqga.....gegsklsdeelellfkefDtdkdGvisfdEFlkly 70 
                 ++ Fk+ D+dgd  ++keel ++++++          +++k    e ++lf+ +Dtd++ +is+dE++ ++
  KOO25338.1 609 ETLFKLADVDGDQTVTKEELTSAITQH---PelcelWPEFK---MEGDELFRLIDTDNSNSISLDELKCYF 673
                 567****************99999973...45544444444...45689*****************99887 PP

>> EF-hand_5  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.0       2.3   6.8e+03      16      21 ..     539     544 ..     538     547 .. 0.83
   2 !    8.3   0.0   0.00055       1.7       4      21 ..     611     628 ..     607     632 .. 0.88
   3 !   16.2   0.1   1.8e-06    0.0053       3      22 ..     651     670 ..     649     673 .. 0.93

  Alignments for each domain:
  == domain 1  score: -3.1 bits;  conditional E-value: 2.3
                 E-HHHH CS
   EF-hand_5  16 IskeEL 21 
                 Is+ EL
  KOO25338.1 539 ISRNEL 544
                 9****9 PP

  == domain 2  score: 8.3 bits;  conditional E-value: 0.00055
                 HHHHH-SS-SSCE-HHHH CS
   EF-hand_5   4 tFqaiDlNgDGkIskeEL 21 
                 +F+ +D++gD +++keEL
  KOO25338.1 611 LFKLADVDGDQTVTKEEL 628
                 8****************9 PP

  == domain 3  score: 16.2 bits;  conditional E-value: 1.8e-06
                 HHHHHH-SS-SSCE-HHHHH CS
   EF-hand_5   3 dtFqaiDlNgDGkIskeELk 22 
                 ++F+ iD++++  Is +ELk
  KOO25338.1 651 ELFRLIDTDNSNSISLDELK 670
                 58****************97 PP

>> EF-hand_8  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.0       1.6   4.6e+03       5      29 ..     168     190 ..     166     192 .. 0.71
   2 !    4.9   0.0     0.008        24      28      48 ..     608     628 ..     602     633 .. 0.90
   3 !   16.6   0.2   1.8e-06    0.0053      29      54 ..     650     675 ..     646     676 .. 0.89

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 1.6
   EF-hand_8   5 Itreelrril.rilglkkglseeevd 29 
                 +++e + r+  ++     g+ +eevd
  KOO25338.1 168 VSPEGFLRATiAK-SR--GIQPEEVD 190
                 7899999966554.33..58899988 PP

  == domain 2  score: 4.9 bits;  conditional E-value: 0.008
   EF-hand_8  28 vdilfrefDtdgdGkisfeEF 48 
                 +++lf+++D dgd ++++eE 
  KOO25338.1 608 AETLFKLADVDGDQTVTKEEL 628
                 589***************995 PP

  == domain 3  score: 16.6 bits;  conditional E-value: 1.8e-06
   EF-hand_8  29 dilfrefDtdgdGkisfeEFcvller 54 
                 d+lfr++Dtd+++ is++E   ++++
  KOO25338.1 650 DELFRLIDTDNSNSISLDELKCYFKK 675
                 79*****************9887776 PP

>> Metallophos  Calcineurin-like phosphoesterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.0   8.1e-06     0.024       2      79 ..      48     143 ..      47     181 .. 0.72
   2 ?   -1.4   0.0      0.95   2.8e+03     111     124 ..     267     281 ..     252     337 .. 0.59

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 8.1e-06
                  EEEEEESBTBTTCCTHHHHHHHHHHHH...............HHHTTESEEEEESTSSSSS.....HHHHHHHHHHHHHHHHTSEEEEEC-TTS.... CS
  Metallophos   2 rilvigDlHlalgggqlddllkllddl...............lreekpdlvllaGDlvdrg.....dlekellellaalvkypipvylllGNHe.... 75 
                  ++++++D+      g++++++k+++                 ++ +    +++ GD vd g     ++      l++ + kyp  v+++lGN +    
   KOO25338.1  48 NVAFMTDVE-----GNWEYFIKCIEMSpvlellslhedgsadIKLQPGWHFVFGGDSVDKGgkvggSIRV-ATTLVRLKKKYPSAVHIILGNRDinkm 139
                  6999*****.....**********666666666666555555222334556669******99**764444.4444777777789**********6665 PP

                  CHHH CS
  Metallophos  76 gfee 79 
                   f+ 
   KOO25338.1 140 RFTS 143
                  3333 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 0.95
                  ETTEEEEEEEESE...C CS
  Metallophos 111 gsgslkvlllhGg...s 124
                  + g  ++l++hGg   +
   KOO25338.1 267 VLG--DTLFVHGGlqgN 281
                  334..566666662221 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (757 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       480  (0.0267723); expected 358.6 (0.02)
Passed bias filter:                      447  (0.0249317); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.64u 0.24s 00:00:00.88 Elapsed: 00:00:00.41
# Mc/sec: 5530.03
//
Query:       KOO25339.1  [L=1276]
Description: poly [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.2e-67  222.1  60.7    2.7e-07   30.4   0.0   15.0 16  Arm             Armadillo/beta-catenin-like repeat
    1.8e-14   53.8   0.0      3e-14   53.1   0.0    1.2  1  PARP            Poly(ADP-ribose) polymerase catalytic domain
    3.2e-06   27.9  13.2      0.029   15.2   1.8    3.9  2  Nucleoporin_FG  Nucleoporin FG repeat region
    3.7e-05   24.2   0.0    5.9e-05   23.6   0.0    1.3  1  WWE             WWE domain
     0.0033   16.9   0.1         34    3.8   0.0    5.0  5  Arm_2           Armadillo-like


Domain annotation for each model (and alignments):
>> Arm  Armadillo/beta-catenin-like repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.7       2.6   9.3e+03      29      41 .]      10      22 ..      10      22 .. 0.86
   2 !   21.3   0.1   5.6e-08    0.0002       1      41 []      23      63 ..      23      63 .. 0.95
   3 !    8.6   0.1   0.00054       1.9      10      40 ..      74     104 ..      67     105 .. 0.92
   4 !    9.2   0.1   0.00037       1.3      13      41 .]     114     142 ..     112     142 .. 0.94
   5 !   26.2   0.1   1.5e-09   5.5e-06       2      40 ..     145     183 ..     144     184 .. 0.93
   6 !    6.5   0.1    0.0025         9       5      40 ..     190     227 ..     186     228 .. 0.85
   7 ?   -4.6   1.6         5   1.8e+04      32      41 .]     427     436 ..     425     436 .. 0.84
   8 !   20.7   0.1   8.4e-08    0.0003       1      41 []     438     478 ..     438     478 .. 0.94
   9 !   29.7   0.0   1.3e-10   4.6e-07       1      41 []     480     520 ..     480     520 .. 0.96
  10 !   26.3   0.1   1.5e-09   5.2e-06       1      41 []     522     562 ..     522     562 .. 0.96
  11 !   30.4   0.0   7.4e-11   2.7e-07       2      41 .]     565     604 ..     563     604 .. 0.94
  12 !   23.5   0.0   1.1e-08     4e-05       1      41 []     606     646 ..     606     646 .. 0.95
  13 !   17.0   0.0   1.3e-06    0.0046       1      40 [.     648     687 ..     648     688 .. 0.96
  14 !   17.1   0.1   1.1e-06     0.004       2      41 .]     822     861 ..     821     861 .. 0.93
  15 !   12.5   0.5   3.1e-05      0.11       5      41 .]     866     902 ..     862     902 .. 0.93
  16 !   10.1   0.7   0.00018      0.66       3      41 .]     906     944 ..     904     944 .. 0.93

  Alignments for each domain:
  == domain 1  score: -3.1 bits;  conditional E-value: 2.6
                HHHHHHHHHHHTT CS
         Arm 29 qeeAawALsNLaa 41
                q +Aa AL+ La+
  KOO25339.1 10 QAAAAEALWKLAR 22
                6689*****9986 PP

  == domain 2  score: 21.3 bits;  conditional E-value: 5.6e-08
                SHHHHHHHHHTTHHHHHHHHTTTSSHHHHHHHHHHHHHHTT CS
         Arm  1 nsenkdavieaGavppLvrLLssedeevqeeAawALsNLaa 41
                n  nk+a+  aG+v++Lv+L + +d e +  Aa+AL+ Laa
  KOO25339.1 23 NTANKKAIAAAGGVEALVALTRGGDAEGKAKAATALWSLAA 63
                5679***********************************96 PP

  == domain 3  score: 8.6 bits;  conditional E-value: 0.00054
                 HTTHHHHHHHHTTTSSHHHHHHHHHHHHHHT CS
         Arm  10 eaGavppLvrLLssedeevqeeAawALsNLa 40 
                  aG++++L +L +++d + +  Aa+AL  La
  KOO25339.1  74 AAGGIEVLAALVRDGDAQGKSSAAGALVSLA 104
                 59*************************9998 PP

  == domain 4  score: 9.2 bits;  conditional E-value: 0.00037
                 HHHHHHHHTTTSSHHHHHHHHHHHHHHTT CS
         Arm  13 avppLvrLLssedeevqeeAawALsNLaa 41 
                 ++ +Lv L +++d+e +  Aa+AL+ Laa
  KOO25339.1 114 VIGALVVLARDGDTECKAKAAGALWRLAA 142
                 5789**********************996 PP

  == domain 5  score: 26.2 bits;  conditional E-value: 1.5e-09
                 HHHHHHHHHTTHHHHHHHHTTTSSHHHHHHHHHHHHHHT CS
         Arm   2 senkdavieaGavppLvrLLssedeevqeeAawALsNLa 40 
                 s n  ++   G+++pLv+L +++d e + +A++AL+NLa
  KOO25339.1 145 SANVATIATTGGIEPLVALVRNGDAEGKVNATAALWNLA 183
                 6788899999****************************8 PP

  == domain 6  score: 6.5 bits;  conditional E-value: 0.0025
                 HHHHHHTTHHHHHHHHTT..TSSHHHHHHHHHHHHHHT CS
         Arm   5 kdavieaGavppLvrLLs..sedeevqeeAawALsNLa 40 
                   a++ a +++pLv+L +  s d + +  A++ L  L+
  KOO25339.1 190 LAAIRAARGIEPLVALVRdgSSDADAKAHAVALLEKLS 227
                 57899999**********99999999999998887666 PP

  == domain 7  score: -4.6 bits;  conditional E-value: 5
                 HHHHHHHHTT CS
         Arm  32 AawALsNLaa 41 
                 Aa+AL+ Laa
  KOO25339.1 427 AASALWGLAA 436
                 999**99985 PP

  == domain 8  score: 20.7 bits;  conditional E-value: 8.4e-08
                 SHHHHHHHHHTTHHHHHHHHTTTSSHHHHHHHHHHHHHHTT CS
         Arm   1 nsenkdavieaGavppLvrLLssedeevqeeAawALsNLaa 41 
                 ++ nk a++ aG++ +Lv+L +++d e + +Aa+AL+ Laa
  KOO25339.1 438 DDVNKAAIRAAGGIVALVTLVRDGDAEGKANAAGALQILAA 478
                 578*********************************98875 PP

  == domain 9  score: 29.7 bits;  conditional E-value: 1.3e-10
                 SHHHHHHHHHTTHHHHHHHHTTTSSHHHHHHHHHHHHHHTT CS
         Arm   1 nsenkdavieaGavppLvrLLssedeevqeeAawALsNLaa 41 
                 ++ nk a++ aG++ pLv+L +++d e +  Aa+AL+NLaa
  KOO25339.1 480 DDANKAAIRAAGGIAPLVALVRDGDAEGKAYAAGALGNLAA 520
                 578************************************96 PP

  == domain 10  score: 26.3 bits;  conditional E-value: 1.5e-09
                 SHHHHHHHHHTTHHHHHHHHTTTSSHHHHHHHHHHHHHHTT CS
         Arm   1 nsenkdavieaGavppLvrLLssedeevqeeAawALsNLaa 41 
                 ++ nk a++ aG++++Lv+L + +d + +  Aa+AL+NLaa
  KOO25339.1 522 DDANKAAIRAAGGIEALVTLVREGDADGKASAAGALQNLAA 562
                 578************************************96 PP

  == domain 11  score: 30.4 bits;  conditional E-value: 7.4e-11
                 HHHHHHHHHTTHHHHHHHHTTTSSHHHHHHHHHHHHHHTT CS
         Arm   2 senkdavieaGavppLvrLLssedeevqeeAawALsNLaa 41 
                 + nk a++ a +++pLv+L +++d e + +Aa+AL+NLaa
  KOO25339.1 565 EANKAAIRAADGIEPLVTLVRDGDAEGKANAAGALWNLAA 604
                 459***********************************96 PP

  == domain 12  score: 23.5 bits;  conditional E-value: 1.1e-08
                 SHHHHHHHHHTTHHHHHHHHTTTSSHHHHHHHHHHHHHHTT CS
         Arm   1 nsenkdavieaGavppLvrLLssedeevqeeAawALsNLaa 41 
                 ++ nk a++ aG++++Lv+L++ +d + +  Aa+AL+ L+a
  KOO25339.1 606 DDANKAAIRAAGGIEALVTLMREGDADGKASAAGALWGLSA 646
                 578**********************************9986 PP

  == domain 13  score: 17.0 bits;  conditional E-value: 1.3e-06
                 SHHHHHHHHHTTHHHHHHHHTTTSSHHHHHHHHHHHHHHT CS
         Arm   1 nsenkdavieaGavppLvrLLssedeevqeeAawALsNLa 40 
                 ++ nk a++ +G++++L +L +++d   +  Aa+AL+NL 
  KOO25339.1 648 DDANKAAIRASGGIKALYTLSRDGDAAGKAKAAGALQNLV 687
                 578***********************************96 PP

  == domain 14  score: 17.1 bits;  conditional E-value: 1.1e-06
                 HHHHHHHHHTTHHHHHHHHTTTSSHHHHHHHHHHHHHHTT CS
         Arm   2 senkdavieaGavppLvrLLssedeevqeeAawALsNLaa 41 
                 ++ + a+  aGa+ppLv++L+++  e q +Aa AL+ La+
  KOO25339.1 822 DPMRGALAAAGALPPLVAMLRNGTAEEQAAAAEALWKLAR 861
                 678889999***************************9996 PP

  == domain 15  score: 12.5 bits;  conditional E-value: 3.1e-05
                 HHHHHHTTHHHHHHHHTTTSSHHHHHHHHHHHHHHTT CS
         Arm   5 kdavieaGavppLvrLLssedeevqeeAawALsNLaa 41 
                 k a++ aGa+ pL +L +++d + +  Aa+AL+ Laa
  KOO25339.1 866 KGAIVAAGALVPLAALVRDGDAQGKAKAATALWSLAA 902
                 6799*******************************96 PP

  == domain 16  score: 10.1 bits;  conditional E-value: 0.00018
                 HHHHHHHHTTHHHHHHHHTTTSSHHHHHHHHHHHHHHTT CS
         Arm   3 enkdavieaGavppLvrLLssedeevqeeAawALsNLaa 41 
                  nk a++ aGa+ pL +L +++d   +  Aa+AL+ Laa
  KOO25339.1 906 ANKAAIVAAGALVPLAALVRDGDALGKAKAASALQILAA 944
                 69********************************98875 PP

>> PARP  Poly(ADP-ribose) polymerase catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.1   0.0   8.2e-18     3e-14      12     125 ..    1106    1221 ..    1099    1254 .. 0.87

  Alignments for each domain:
  == domain 1  score: 53.1 bits;  conditional E-value: 8.2e-18
                  HHTS-TTTTEEEEEEEEEEEEETTHHHHCGCCGG.........SS-EEEEEEEE-GGGHHHHHHH-S--S-TTS-GGGSTTSSSEEEBSSHHHHH.. CS
        PARP   12 kktldsthayklkileifrvqregeaerfqekkk.........lrnrrlLfHGsrltnvasilsqGLriappeapvtGymfGkGiYfAddaskSa.. 97  
                  ++++ ++   + ++l+i  +  e   + +q+ +          + n+  L+HG++ + ++si+ +G+  +++++++   m+G G+Yf++++ +S+  
  KOO25339.1 1106 RSMMPPQL--RSRLLTISHIRSEARFNLYQAARDalisrigraQLNEAWLWHGTSRDTLESIMANGF--DRNMNER--GMYGVGSYFSNQLKYSLne 1196
                  55555444..789999*********9****99999*****99999**********************..9999999..89**************966 PP

                  GGG--BSSS-EEEEEEEEEE--SEEEES CS
        PARP   98 nYcktsekkgsglllLaeValGdikelt 125 
                  +Y k+ +++gs+++lL +V++G+   + 
  KOO25339.1 1197 EYAKP-DNEGSQWVLLVRVLVGQ--SCV 1221
                  79998.999*************9..444 PP

>> Nucleoporin_FG  Nucleoporin FG repeat region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   1.8   8.2e-06     0.029       1      61 [.     308     368 ..     269     409 .. 0.65
   2 !   14.9   4.0     1e-05     0.036       1      81 [.     734     817 ..     700     832 .. 0.63

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 8.2e-06
  Nucleoporin_FG   1 glFGaaatstsgglFGststt.atstgglFGasstatatasggglfgatsqtaasgglFGst 61 
                     glFG       gglFG+++++ +++  +l  + s+++  + ggglfg   +    gglFG +
      KOO25339.1 308 GLFG-DDDDDDGGLFGGAPKKlPAAPPKLPATPSATKPMSDGGGLFGDDDEDGGDGGLFGPA 368
                     3444.444444444444444443333333333333333333334444444444444444444 PP

  == domain 2  score: 14.9 bits;  conditional E-value: 1e-05
  Nucleoporin_FG   1 glFGaaatstsgglFGststt.....atstgglFGasstatatasggglfgatsqtaasgglFGstnattqtta..........tgglFGstaat 80 
                     glFG       gglFGs++++                ++a+++  ggglfg        gglFGs++++ +t            +gglFG    +
      KOO25339.1 734 GLFG-DDDVDDGGLFGSAPKKlptppL---------PKPAAKKGGGGGLFGD--DDDDDGGLFGSAPKKLPTPPlpkpaakkggGGGLFGDDDDD 816
                     3555.5555555555555555222220.........2444444444466666..56666666666666655554555556666677777766555 PP

  Nucleoporin_FG  81 a 81 
                      
      KOO25339.1 817 D 817
                     5 PP

>> WWE  WWE domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.6   0.0   1.6e-08   5.9e-05       2      68 .]     957    1024 ..     956    1024 .. 0.90

  Alignments for each domain:
  == domain 1  score: 23.6 bits;  conditional E-value: 1.6e-08
                  EEEEEEET...-TCEEE--HHHHHHHHHHHHTT-SEEEHHHHTTSTTEEEETTTTEEEETTT--EEEEEE CS
         WWE    2 vvWewedd...ggeWeeYspevsellEeayqkkkksvelsfsvagapYtvdfnsmvQtnkgtgtsrrVrR 68  
                  +vW wed    +g W+ ++ +++e+  ++  +    + +++++ g+ Y+vd++  +Q n  tg+ r+ +R
  KOO25339.1  957 HVWMWEDGavgSGAWQLFDTASEETFRNQEAS--GVLRFRIEIRGQAYDVDLRLCTQKNVRTGFLRNLKR 1024
                  59*********9***************98554..445667777************************999 PP

>> Arm_2  Armadillo-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.2   0.0     0.028     1e+02      30      86 ..      51     108 ..      35     119 .. 0.74
   2 !    3.8   0.0    0.0094        34      40      83 ..     141     184 ..     117     194 .. 0.88
   3 ?    0.8   0.0     0.076   2.7e+02      44      86 ..     439     481 ..     428     490 .. 0.84
   4 ?    1.9   0.0     0.037   1.3e+02      36      89 ..     514     568 ..     493     573 .. 0.82
   5 ?   -2.3   0.0      0.68   2.4e+03      37      81 ..     898     942 ..     836     953 .. 0.65

  Alignments for each domain:
  == domain 1  score: 2.2 bits;  conditional E-value: 0.028
       Arm_2  30 qeialltlgnsaay.svnqdiirdlggitiianllsksnaevkekalnalnnlsenve 86 
                 + +a  +l   aa+ ++n++ i   ggi ++a+l+ + +a+ k  a  al  l++++ 
  KOO25339.1  51 KAKAATALWSLAAFdAANKAGITAAGGIEVLAALVRDGDAQGKSSAAGALVSLADGNA 108
                 556666666677774678999**********************999888886665443 PP

  == domain 2  score: 3.8 bits;  conditional E-value: 0.0094
       Arm_2  40 saaysvnqdiirdlggitiianllsksnaevkekalnalnnlse 83 
                 +aa+s+n ++i   ggi  + +l+ + +ae k++a  al nl++
  KOO25339.1 141 AAAHSANVATIATTGGIEPLVALVRNGDAEGKVNATAALWNLAH 184
                 79****************999*****************999876 PP

  == domain 3  score: 0.8 bits;  conditional E-value: 0.076
       Arm_2  44 svnqdiirdlggitiianllsksnaevkekalnalnnlsenve 86 
                  vn++ ir  ggi+ +  l+ + +ae k +a  al+ l+  ++
  KOO25339.1 439 DVNKAAIRAAGGIVALVTLVRDGDAEGKANAAGALQILAADDD 481
                 589**************************99999987766554 PP

  == domain 4  score: 1.9 bits;  conditional E-value: 0.037
       Arm_2  36 tlgnsaay.svnqdiirdlggitiianllsksnaevkekalnalnnlsenvenqk 89 
                 +lgn aa   +n++ ir  ggi  +  l+ + +a  k  a  al+nl+  +e +k
  KOO25339.1 514 ALGNLAADdDANKAAIRAAGGIEALVTLVREGDADGKASAAGALQNLAADDEANK 568
                 6777666426899*********************************998887654 PP

  == domain 5  score: -2.3 bits;  conditional E-value: 0.68
       Arm_2  37 lgnsaaysvnqdiirdlggitiianllsksnaevkekalnalnnl 81 
                  + +a  ++n++ i   g ++ +a+l+ + +a  k ka +al+ l
  KOO25339.1 898 WSLAAGDAANKAAIVAAGALVPLAALVRDGDALGKAKAASALQIL 942
                 344444556667777777777777777777777777777766655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1276 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       559  (0.0311785); expected 358.6 (0.02)
Passed bias filter:                      292  (0.0162865); expected 358.6 (0.02)
Passed Vit filter:                        48  (0.00267723); expected 17.9 (0.001)
Passed Fwd filter:                        15  (0.000836633); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.82u 0.28s 00:00:01.10 Elapsed: 00:00:00.46
# Mc/sec: 8376.86
//
Query:       KOO25340.1  [L=467]
Description: wd-40 repeat-containing protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    7.4e-29   99.4   9.3    1.8e-07   31.7   0.1    6.7  7  WD40           WD domain, G-beta repeat
    1.7e-10   41.1   0.1      0.044   14.1   0.1    4.9  5  ANAPC4_WD40    Anaphase-promoting complex subunit 4 WD40 doma
    0.00076   19.9   4.2          5    7.7   0.0    5.7  5  PQQ_3          PQQ-like domain
     0.0093   14.7   0.0       0.55    8.9   0.0    2.9  4  Nucleoporin_N  Nup133 N terminal like
  ------ inclusion threshold ------
      0.022   13.4   0.3         20    3.6   0.0    4.1  5  Nup160         Nucleoporin Nup120/160
      0.025   13.9   0.0        1.4    8.2   0.0    2.7  3  WD40_like      WD40-like domain
      0.028   14.0   0.8        0.5    9.9   0.1    2.8  1  PQQ_2          PQQ-like domain


Domain annotation for each model (and alignments):
>> WD40  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.9   0.0     0.043   1.1e+02      12      38 .]      85     110 ..      74     110 .. 0.79
   2 !   16.6   0.0   4.2e-06     0.011       3      37 ..     116     150 ..     114     151 .. 0.75
   3 !   20.0   0.1   3.5e-07   0.00089       2      38 .]     156     192 ..     155     192 .. 0.81
   4 ?   -2.4   0.1       4.4   1.1e+04      19      36 ..     237     254 ..     226     256 .. 0.71
   5 !   15.8   0.1   7.8e-06      0.02       4      38 .]     263     304 ..     260     304 .. 0.82
   6 !   11.4   0.0   0.00018      0.47      24      38 .]     336     350 ..     322     350 .. 0.85
   7 !   31.7   0.1   7.1e-11   1.8e-07       1      37 [.     354     391 ..     354     392 .. 0.94

  Alignments for each domain:
  == domain 1  score: 3.9 bits;  conditional E-value: 0.043
                 SEEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40  12 svtslafspdgawlasGsdDgtvriWd 38 
                 s+++ a+ +dg+   ++++Dg +ri d
  KOO25340.1  85 SIYAAAVGRDGDI-YCAGKDGDLRIID 110
                 4888888999999.77889*****966 PP

  == domain 2  score: 16.6 bits;  conditional E-value: 4.2e-06
                 EEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEE CS
        WD40   3 clrtltGH.ssvtslafspdgawlasGsdDgtvriW 37 
                  l+ l GH   v++la  +d   las+s D+t+r+W
  KOO25340.1 116 VLTQLPGHtERVCALAKMSDEL-LASASNDKTIRLW 150
                 567799**666*9995444444.589999******* PP

  == domain 3  score: 20.0 bits;  conditional E-value: 3.5e-07
                 EEEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40   2 qclrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 
                 +c +tl+GH + v++l    + + l+sG  D+ v++Wd
  KOO25340.1 156 SCFGTLRGHkGAVSAL-LAVNDRILVSGAHDQAVKVWD 192
                 699******5558766.5557777899*77*******9 PP

  == domain 4  score: -2.4 bits;  conditional E-value: 4.4
                 ETTSSEEEEEETTSEEEE CS
        WD40  19 spdgawlasGsdDgtvri 36 
                 s+  + +a+G++ g v++
  KOO25340.1 237 SSREQIVAAGTWGGAVHL 254
                 556667889998887775 PP

  == domain 5  score: 15.8 bits;  conditional E-value: 7.8e-06
                 EEEEESS.SSEEEEE.......EETTSSEEEEEETTSEEEEEE CS
        WD40   4 lrtltGH.ssvtsla.......fspdgawlasGsdDgtvriWd 38 
                  +++++  + v+sl        +s  g +l++Gs Dg vr+Wd
  KOO25340.1 263 STSFEACsGAVWSLLapkeisgWSAPGMLLTAGS-DGLVRLWD 304
                 5566655333999999999999************.*******9 PP

  == domain 6  score: 11.4 bits;  conditional E-value: 0.00018
                 EEEEEETTSEEEEEE CS
        WD40  24 wlasGsdDgtvriWd 38 
                 +l++G+ D+ v++Wd
  KOO25340.1 336 LLITGGHDHMVKVWD 350
                 4789999*******9 PP

  == domain 7  score: 31.7 bits;  conditional E-value: 7.1e-11
                 TEEEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEE CS
        WD40   1 gqclrtltGH.ssvtslafspdgawlasGsdDgtvriW 37 
                 g+cl  l GH  +v++la++ + + l+sGs Dgtvr+W
  KOO25340.1 354 GRCLFDLPGHsEPVRCLAVDEHDRTLISGSTDGTVRLW 391
                 689*******777************************* PP

>> ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.1   0.0    0.0026       6.8      48      87 ..      93     130 ..      54     135 .. 0.79
   2 !   14.1   0.1   1.7e-05     0.044       8      70 ..     136     196 ..     131     205 .. 0.91
   3 ?    4.7   0.0     0.014        36      46      81 ..     236     271 ..     201     278 .. 0.83
   4 ?   -1.1   0.0      0.96   2.5e+03      46      67 ..     285     305 ..     271     309 .. 0.79
   5 !    8.7   0.0   0.00085       2.2      29      68 ..     348     394 ..     329     399 .. 0.81

  Alignments for each domain:
  == domain 1  score: 7.1 bits;  conditional E-value: 0.0026
  ANAPC4_WD40  48 pdgklLavaysdgevrlldaesgkvvhslsvksekavtcl 87 
                   dg + + a +dg +r++d +sg+v+ +l+ ++e +v+ l
   KOO25340.1  93 RDGDIYC-AGKDGDLRIIDPKSGRVLTQLPGHTE-RVCAL 130
                  5666554.568******************99888.47665 PP

  == domain 2  score: 14.1 bits;  conditional E-value: 1.7e-05
  ANAPC4_WD40   8 DLiAlatedgellvfRlngqrvwtleedkedsevrsLaWkpdgklLavaysdgevrlldaesg 70 
                  +L+A a++d+ +++ R+n    +++   ++++ v++L    ++++L+ + +d +v++ d  +g
   KOO25340.1 136 ELLASASNDKTIRLWRMNEASCFGT-LRGHKGAVSALL-AVNDRILVSGAHDQAVKVWDLRDG 196
                  7***********************9.688999999985.8999**************998876 PP

  == domain 3  score: 4.7 bits;  conditional E-value: 0.014
  ANAPC4_WD40  46 WkpdgklLavaysdgevrlldaesgkvvhslsvkse 81 
                   +  +++ a ++  g+v+l+d++ g+   s+++ s 
   KOO25340.1 236 LSSREQIVAAGTWGGAVHLCDVQRGRPSTSFEACSG 271
                  4567899******************99999887665 PP

  == domain 4  score: -1.1 bits;  conditional E-value: 0.96
  ANAPC4_WD40  46 WkpdgklLavaysdgevrllda 67 
                  W+  g lL  a sdg vrl d+
   KOO25340.1 285 WSAPGMLL-TAGSDGLVRLWDI 305
                  66666555.57799***99987 PP

  == domain 5  score: 8.7 bits;  conditional E-value: 0.00085
  ANAPC4_WD40  29 vwtl.......eedkedsevrsLaWkpdgklLavaysdgevrlldae 68 
                  vw+        + +++++ vr+La  + ++ L  +  dg+vrl +  
   KOO25340.1 348 VWDCrmgrclfDLPGHSEPVRCLAVDEHDRTLISGSTDGTVRLWQLD 394
                  454455555555578999************************98765 PP

>> PQQ_3  PQQ-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.7   0.0     0.002         5       9      40 .]      78     113 ..      70     113 .. 0.69
   2 ?    1.0   0.0      0.25   6.4e+02      11      38 ..     166     193 ..     148     195 .. 0.63
   3 ?   -0.1   0.0      0.56   1.4e+03       7      33 ..     219     252 ..     218     257 .. 0.73
   4 ?    2.9   0.4     0.065   1.7e+02      10      32 ..     324     345 ..     284     350 .. 0.76
   5 ?    3.1   0.0     0.055   1.4e+02      12      34 ..     366     389 ..     358     395 .. 0.72

  Alignments for each domain:
  == domain 1  score: 7.7 bits;  conditional E-value: 0.002
       PQQ_3   9 lpgpvnssp....avdgglvyvgtgdGtlyAlDaet 40 
                 l+ p  ss     +  +g +y+++ dG l+ +D+++
  KOO25340.1  78 LGKPSDSSIyaaaVGRDGDIYCAGKDGDLRIIDPKS 113
                 44455555554314459****************975 PP

  == domain 2  score: 1.0 bits;  conditional E-value: 0.25
       PQQ_3  11 gpvnssp.avdgglvyvgtgdGtlyAlDa 38 
                 g+v s++ av +++++ g++d  +   D 
  KOO25340.1 166 GAV-SALlAVNDRILVSGAHDQAVKVWDL 193
                 344.3345999999999998988766666 PP

  == domain 3  score: -0.1 bits;  conditional E-value: 0.56
       PQQ_3   7 vqlpgpvnssp...avd....gglvyvgtgdGtl 33 
                 ++ p+p++ +p   +v+    + +v +gt+ G +
  KOO25340.1 219 YRAPSPITNAPscaVVSlssrEQIVAAGTWGGAV 252
                 6778899999988533355668888999998876 PP

  == domain 4  score: 2.9 bits;  conditional E-value: 0.065
       PQQ_3  10 pgpvnsspavdgglvyvgtgdGt 32 
                 +g++ ++++ d+gl+ +g++d+ 
  KOO25340.1 324 GGAI-YAMVEDEGLLITGGHDHM 345
                 2222.445667788888888765 PP

  == domain 5  score: 3.1 bits;  conditional E-value: 0.055
       PQQ_3  12 pvnsspavd..gglvyvgtgdGtly 34 
                 pv + +avd  ++++  g++dGt++
  KOO25340.1 366 PV-RCLAVDehDRTLISGSTDGTVR 389
                 44.3359986689**********96 PP

>> Nucleoporin_N  Nup133 N terminal like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.0      0.62   1.6e+03     143     158 ..      91     106 ..      86     110 .. 0.82
   2 ?    2.2   0.0     0.024        61     212     232 ..     134     154 ..     112     204 .. 0.85
   3 ?   -4.0   0.0       1.8   4.7e+03     214     231 ..     289     306 ..     275     310 .. 0.72
   4 !    8.9   0.0   0.00022      0.55     200     233 ..     363     396 ..     354     403 .. 0.88

  Alignments for each domain:
  == domain 1  score: -2.5 bits;  conditional E-value: 0.62
                    ETTTC-EEEEETTSSE CS
  Nucleoporin_N 143 septgriflagstgrl 158
                    ++++g+i++ag++g+l
     KOO25340.1  91 VGRDGDIYCAGKDGDL 106
                    6789**********76 PP

  == domain 2  score: 2.2 bits;  conditional E-value: 0.024
                    CTCEEEEEETTSEEEEEEEET CS
  Nucleoporin_N 212 srrilytlsskgvirvydlsa 232
                    s ++l ++s++++ir ++++ 
     KOO25340.1 134 SDELLASASNDKTIRLWRMNE 154
                    338999***********9983 PP

  == domain 3  score: -4.0 bits;  conditional E-value: 1.8
                    CEEEEEETTSEEEEEEEE CS
  Nucleoporin_N 214 rilytlsskgvirvydls 231
                    + l t+ s+g +r +d+ 
     KOO25340.1 289 GMLLTAGSDGLVRLWDIR 306
                    456777788888888876 PP

  == domain 4  score: 8.9 bits;  conditional E-value: 0.00022
                    -GG-EEEEEEECCTCEEEEEETTSEEEEEEEETT CS
  Nucleoporin_N 200 ereeivqlridssrrilytlsskgvirvydlsas 233
                     +e++ +l++d+  r l++ s++g++r ++l + 
     KOO25340.1 363 HSEPVRCLAVDEHDRTLISGSTDGTVRLWQLDTV 396
                    5799**************************9865 PP

>> Nup160  Nucleoporin Nup120/160
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.1   0.0     0.091   2.3e+02     230     253 ..     135     158 ..     126     164 .. 0.83
   2 ?    3.6   0.0    0.0079        20     231     277 ..     177     216 ..     166     245 .. 0.64
   3 ?   -0.7   0.0      0.17   4.3e+02     230     249 ..     288     307 ..     252     312 .. 0.76
   4 ?    1.1   0.0     0.046   1.2e+02     221     253 ..     326     357 ..     317     359 .. 0.86
   5 ?    0.7   0.0     0.063   1.6e+02     229     249 ..     375     395 ..     367     428 .. 0.87

  Alignments for each domain:
  == domain 1  score: 0.1 bits;  conditional E-value: 0.091
                 TTEEEEEETT-EEEEEETTTTEEE CS
      Nup160 230 qtylfalsrdgkLrvWnlltgkcl 253
                 + +l+++s d+++r+W  + ++c 
  KOO25340.1 135 DELLASASNDKTIRLWRMNEASCF 158
                 67899***********99988886 PP

  == domain 2  score: 3.6 bits;  conditional E-value: 0.0079
                 TEEEEEETT-EEEEEETTTT.EEEEEEE--......-SSSTTS--SSEESEEE CS
      Nup160 231 tylfalsrdgkLrvWnlltg.kclatidll.....rdeeaqdessskstldpa 277
                  +l++   d+ ++vW+l++g  c+at+ l+     +               +a
  KOO25340.1 177 RILVSGAHDQAVKVWDLRDGlGCTATFRLDgssasK-------------TRDA 216
                 56666678*********9862699999999443321.............2222 PP

  == domain 3  score: -0.7 bits;  conditional E-value: 0.17
                 TTEEEEEETT-EEEEEETTT CS
      Nup160 230 qtylfalsrdgkLrvWnllt 249
                   +l+++ +dg +r+W+++ 
  KOO25340.1 288 PGMLLTAGSDGLVRLWDIRA 307
                 56899************975 PP

  == domain 4  score: 1.1 bits;  conditional E-value: 0.046
                 EET.....TTTEEEEEETT-EEEEEETTTTEEE CS
      Nup160 221 vavavveigqtylfalsrdgkLrvWnlltgkcl 253
                 ++ a+ve ++ +l +   d+ ++vW+ + g+cl
  KOO25340.1 326 AIYAMVE-DEGLLITGGHDHMVKVWDCRMGRCL 357
                 5678888.9999999999********9999886 PP

  == domain 5  score: 0.7 bits;  conditional E-value: 0.063
                 TTTEEEEEETT-EEEEEETTT CS
      Nup160 229 gqtylfalsrdgkLrvWnllt 249
                 ++ +l + s dg++r+W l+t
  KOO25340.1 375 HDRTLISGSTDGTVRLWQLDT 395
                 6677888899*********99 PP

>> WD40_like  WD40-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.2   0.0   0.00053       1.4       3      99 ..      86     182 ..      84     204 .. 0.80
   2 ?    1.6   0.0     0.053   1.4e+02     246     284 ..     239     277 ..     230     299 .. 0.86
   3 ?   -0.2   0.0      0.19   4.9e+02      12      69 ..     334     392 ..     326     398 .. 0.72

  Alignments for each domain:
  == domain 1  score: 8.2 bits;  conditional E-value: 0.00053
   WD40_like   3 iYsidiskkgslilyGgkddkctvlkleslesvsivesfedSvifvklldddlilvvtlDGtillsllenee.evenekieedistvkviddklliGt 99 
                 iY+  + ++g  i   gkd  +++++ +s+ + + + + ++ v     ++d+l+  +++D ti l  +++       +  + ++s    ++d++l+ +
  KOO25340.1  86 IYAAAVGRDG-DIYCAGKDGDLRIIDPKSGRVLTQLPGHTERVCALAKMSDELLASASNDKTIRLWRMNEAScFGTLRGHKGAVSALLAVNDRILVSG 182
                 7777887777.467788999999999999999999999999999999999999999999999999998888744455677888888888888888754 PP

  == domain 2  score: 1.6 bits;  conditional E-value: 0.053
   WD40_like 246 sefvvafsTlcgkvgigDiRdketfkllesgvGviydmk 284
                  e +va  T  g+v ++D+  ++     e++ G ++++ 
  KOO25340.1 239 REQIVAAGTWGGAVHLCDVQRGRPSTSFEACSGAVWSLL 277
                 57789999***********99999999999999999875 PP

  == domain 3  score: -0.2 bits;  conditional E-value: 0.19
   WD40_like  12 gslilyGgkddkctvlkleslesvsivesfedSvifvkllddd..lilvvtlDGtillsl 69 
                   l++ Gg+d+ ++v + + +     + + ++ v  +  +d++   ++ ++ DGt+ l +
  KOO25340.1 334 EGLLITGGHDHMVKVWDCRMGRCLFDLPGHSEPVR-CLAVDEHdrTLISGSTDGTVRLWQ 392
                 44788899999999999999999888888888887.445555446677788999885554 PP

>> PQQ_2  PQQ-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   0.1    0.0002       0.5     113     150 ..      84     122 ..      59     197 .. 0.57

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.0002
       PQQ_2 113 rssaspava.gdtvvvgessgklvaldpkdGkvlWerel 150
                 +s  + av+ ++ ++ ++ +g+l ++dpk+G+vl + + 
  KOO25340.1  84 SSIYAAAVGrDGDIYCAGKDGDLRIIDPKSGRVLTQLPG 122
                 333334444788888888899999999999999877654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (467 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       303  (0.0169); expected 358.6 (0.02)
Passed bias filter:                      266  (0.0148363); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.56u 0.28s 00:00:00.84 Elapsed: 00:00:00.46
# Mc/sec: 3079.02
//
Query:       KOO25341.1  [L=501]
Description: methionine aminopeptidase 2b [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.3e-41  142.6   0.0      2e-41  142.0   0.0    1.3  1  Peptidase_M24  Metallopeptidase family M24
  ------ inclusion threshold ------
        4.6    6.5   8.6        5.9    6.2   7.6    1.6  2  Nop53          Nop53 (60S ribosomal biogenesis)


Domain annotation for each model (and alignments):
>> Peptidase_M24  Metallopeptidase family M24
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  142.0   0.0   2.2e-45     2e-41       2     208 ..     190     488 ..     189     489 .. 0.87

  Alignments for each domain:
  == domain 1  score: 142.0 bits;  conditional E-value: 2.2e-45
                    HHHHHHHHHHHHHHHHHHHHHTTCBHHHHHHHHHHHHH...HHTT.TCEESSSSEEEEGGGGGSTTTBC...SSSB--TTEEEEEEEEEEETTEEE CS
  Peptidase_M24   2 lirkaariasaaleavleaikpgvterelaaeieattl...krhg.arglafppivasgenaavlhytp...ndrvlkegdlvlidagaeydgyas 90 
                    +ir aa+ ++++++++ + ikpg+   ++++ +e+  +   +++g + g+afp  +++++n+ ++h+tp   +++vl++gd+ +id+g +++g ++
     KOO25341.1 190 EIRTAAECHRQVRKHMQSVIKPGMLMTDICEQLENLNRtlvQENGlQAGIAFP--TGCSINHVAAHWTPnsgDKTVLQYGDVCKIDFGTHVNGRII 283
                    69********************************553333455558999****..**************7767888******************** PP

                    EEEEEEECSSGSHHHHHHHHHHHHHHHHHHHC-STTSBHHHHHHHHHHHHHHTTB........CCGBSSCSEEEESS.SSSEE..EEEESSSTTCS CS
  Peptidase_M24  91 DitrTvlvGkftpeqrelyeavleaqeaaikavkpGvtlseidaaarevlesagl........akffphglGHgvGl.evhde..gpsvsresndg 175
                    D+++Tv++   +p+ + l ea++e ++a+++a+  +v+l +++aa++ev+es+++        +k ++++ GH++G  ++h +  +p+v+  + ++
     KOO25341.1 284 DSAWTVHF---DPQFDLLAEAARESTKAGVAAAGIDVRLCDVGAACQEVMESYEVeingktypVKSIRNLNGHSIGPyQIHAGksVPIVK-GGENS 375
                    ********...999999***********************************866668888899999*********88***774456666.3448* PP

                    SB--TTBEEEEEE......EEEEETTT..................................................................... CS
  Peptidase_M24 176 rkleeGmvftiEp......giyfapge..................................................................... 196
                    +k+eeG+ f+iE+      g+++++                                                                       
     KOO25341.1 376 TKMEEGELFAIETfgstgkGYVKED-Lecshymknfdvghiplrlpkakqllqfinknfdtlafcrrwidrageekyllalrnlcdvgivqpyppl 470
                    *************988887666333.245556666677778888888888899999999999999999999999999999999************* PP

                    ......EEEEEBEEEEEE CS
  Peptidase_M24 197 ......ggvriedtvlvt 208
                          ++v+ e+t+l++
     KOO25341.1 471 vdikgsYTVQYEHTILLR 488
                    ****977*******9986 PP

>> Nop53  Nop53 (60S ribosomal biogenesis)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.2   7.6   0.00066       5.9     225     297 ..      13      84 ..       2      91 .. 0.47
   2 ?   -3.4   0.0      0.51   4.6e+03      31      53 ..     370     393 ..     368     409 .. 0.73

  Alignments for each domain:
  == domain 1  score: 6.2 bits;  conditional E-value: 0.00066
       Nop53 225 iaekaataeareeelseekde............gleeeeeeeeeeeeeeeeeeeesee..eeklnapvkkkpkrKTkaqRnkekrrk 297
                 i e  ++ +a+         e            ++++e++ +  ++ +  +e++   e   e+++a +kk++k K  a R+k+++ +
  KOO25341.1  13 IDEDVEDGDAAA--------EgaddkdgaaapsAAADEDDAD--AD-GV-AEGG---EagGEAMSASKKKREKAKAAAARKKAAATE 84 
                 222222222222........1111112222211122222222..11.11.2222...1346889999999999********998765 PP

  == domain 2  score: -3.4 bits;  conditional E-value: 0.51
       Nop53  31 tGg.vlsekkdeeLFvvDtkgdee 53 
                 +Gg + ++++  eLF+++t g++ 
  KOO25341.1 370 KGGeNSTKMEEGELFAIETFGSTG 393
                 6665777888899****9988765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (501 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       823  (0.0459033); expected 358.6 (0.02)
Passed bias filter:                      549  (0.0306208); expected 358.6 (0.02)
Passed Vit filter:                        57  (0.00317921); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.60u 0.28s 00:00:00.88 Elapsed: 00:00:00.45
# Mc/sec: 3332.65
//
Query:       KOO25342.1  [L=345]
Description: hypothetical protein Ctob_001206 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.4e-07   29.1   9.6       0.09   12.6   0.2    3.9  3  IQ        IQ calmodulin-binding motif
  ------ inclusion threshold ------
        9.5    5.7  19.6         13    5.3  19.6    1.3  1  DUF572    Family of unknown function (DUF572)


Domain annotation for each model (and alignments):
>> IQ  IQ calmodulin-binding motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.2   0.4   6.1e-05      0.55       2      17 ..      77      92 ..      76      94 .. 0.92
   2 !   10.2   0.4   6.1e-05      0.55       2      17 ..     124     139 ..     123     141 .. 0.92
   3 !   12.6   0.2     1e-05      0.09       2      18 ..     167     183 ..     166     185 .. 0.93

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 6.1e-05
                HHHHHHHHHHHHHHHH CS
          IQ  2 kaaikIQaawRGylaR 17
                +aa+k Qa  RG +aR
  KOO25342.1 77 AAATKVQAIQRGNVAR 92
                69*************9 PP

  == domain 2  score: 10.2 bits;  conditional E-value: 6.1e-05
                 HHHHHHHHHHHHHHHH CS
          IQ   2 kaaikIQaawRGylaR 17 
                 +aa+k Qa  RG +aR
  KOO25342.1 124 AAATKVQAIQRGNVAR 139
                 69*************9 PP

  == domain 3  score: 12.6 bits;  conditional E-value: 1e-05
                 HHHHHHHHHHHHHHHHH CS
          IQ   2 kaaikIQaawRGylaRk 18 
                 +aa+k Qa+ RG +aR+
  KOO25342.1 167 AAATKVQAVQRGNVARQ 183
                 69**************8 PP

>> DUF572  Family of unknown function (DUF572)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.3  19.6    0.0014        13     137     276 ..      70     240 ..      51     325 .. 0.53

  Alignments for each domain:
  == domain 1  score: 5.3 bits;  conditional E-value: 0.0014
      DUF572 137 kdskkemealesLeeLq.elnqrqakvdfdanlelrkefreekkereeeeedeealkekisle...kikllpedeedekkakllegkte.......... 221
                 ++  ke++a  +++ +q    +r+++v+ ++  ++r e +++ k+  e++++e+a ++k++     ++ + ++ +  +++a+ +e +t+          
  KOO25342.1  70 EKAAKEAAAATKVQAIQrGNVAREQQVSTARERAARIEAETHAKAASEKAAKEAAAATKVQAIqrgNVAREQQVSTARERAARIEAETHakaasekaaa 168
                 556788889999999995445777899999999999999999999988888888888777332222222222333344444444432221111111111 PP

      DUF572 222 .......slfasseesaksakkkptkk..............esskekkkeslekklskltkkkad............................sslvvr 271
                        +                  +              +             ++ + k++a+                             +lv +
  KOO25342.1 169 atkvqavQ------------------RgnvarqapharaegK-------------TAAE-KEAAEaraaadkaaaetraaavaraaaeeaaaeAKLVAK 235
                 11111110..................1222222222222110.............1111.111110000001111111111111111222222222222 PP

      DUF572 272 Kkkke 276
                 K+++e
  KOO25342.1 236 KEAAE 240
                 22222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (345 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2122  (0.118356); expected 358.6 (0.02)
Passed bias filter:                      381  (0.0212505); expected 358.6 (0.02)
Passed Vit filter:                        95  (0.00529868); expected 17.9 (0.001)
Passed Fwd filter:                        39  (0.00217525); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.99u 0.35s 00:00:01.34 Elapsed: 00:00:00.52
# Mc/sec: 2009.06
//
Query:       KOO25343.1  [L=273]
Description: hypothetical protein Ctob_001201 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.4e-12   47.1   0.0    4.4e-12   46.3   0.0    1.4  1  NAD_binding_10   NAD(P)H-binding
      2e-08   34.0   0.0    1.3e-07   31.4   0.0    1.9  2  Epimerase        NAD dependent epimerase/dehydratase family
     0.0002   20.4   0.0    0.00032   19.8   0.0    1.3  1  3Beta_HSD        3-beta hydroxysteroid dehydrogenase/isomeras
  ------ inclusion threshold ------
      0.025   14.8   0.0      0.055   13.7   0.0    1.6  1  Sacchrp_dh_NADP  Saccharopine dehydrogenase NADP binding doma
      0.062   12.8   0.0       0.11   12.1   0.0    1.4  1  NmrA             NmrA-like family
      0.068   13.1   0.0       0.15   12.0   0.0    1.6  1  KR               KR domain


Domain annotation for each model (and alignments):
>> NAD_binding_10  NAD(P)H-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.3   0.0   1.5e-15   4.4e-12       1     181 [.      17     248 ..      17     251 .. 0.79

  Alignments for each domain:
  == domain 1  score: 46.3 bits;  conditional E-value: 1.5e-15
                     TTTSHHHHHHHHHHHHC-T-EEEEEETTHHHCH.HHHCTTTCEEEE--TT-CCHHHHHHTT-SEEEES-..................--TCC..H CS
  NAD_binding_10   1 GAtGkvGrllvkellargghevtalvRnpekla.eleaeeglevvegdvtdvedlaealkgadaVvsal..................ggggk..d 74 
                     G++G vGr+++k ++++g+++vt l R+ e  + + ++ + ++ v g+++d+ ++ + + + daVv a+                  ++++k  +
      KOO25343.1  17 GGNGFVGRQVCKYAVRSGKFAVTSLSRRGECPKpNDPELASVTWVAGNALDKPTVDKYVGQSDAVVHAIgllfdvnsgltflntftsASKSKpdE 111
                     9**************************97644312245689****************************99999988888888877522222330 PP

                     HHH....................HHHHHHHHHHCT--EEEEEEETTTTS...GCGCHHHHHHHHCCHHHHHHHHHHHHHHHHS..SSEEEEEEE- CS
  NAD_binding_10  75 eeg....................aknivdaakeagvkRfvlvsaigvgd...evpgefgewnkellkaylaakraaeellras..gldwTivrpg 144
                       g                    akn++ a+  +    f +vs + +g    +  ++++  + e+lk+yl akra e++l +s   l  +ivrp+
      KOO25343.1 112 --GestydnitrktallaiaalkAKNALPAMMGKRA-PFGFVSCAESGWpdvQFGEQVEAAAPEWLKRYLVAKRAVEAELASStgSLRPVIVRPS 203
                     ..2455566678888999999999999999987665.688888888773112333445666778******************8668********* PP

                     CEE-ST--SEEEE........ETTSS----EEEHHHHHHHHHHHC CS
  NAD_binding_10 145 gLtdepttkyrvv........ekgepfkggsisradVAdvlvavl 181
                      + d ++ ++  +        + g pf ++++  +dV + +va l
      KOO25343.1 204 LIWDWKKFDVLPIipffnlasAIGVPFVDKTVRVEDVGRSIVAGL 248
                     ****99887766666666655568899999999999999999866 PP

>> Epimerase  NAD dependent epimerase/dehydratase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.4   0.0   4.2e-11   1.3e-07       2      73 ..      14      86 ..      13     102 .. 0.87
   2 ?    0.3   0.0      0.13   3.8e+02     115     170 ..     151     203 ..     111     205 .. 0.68

  Alignments for each domain:
  == domain 1  score: 31.4 bits;  conditional E-value: 4.2e-11
                EEETTTSHHHHHHHHHHHHCT.SEEEEEES-STTTTCHHCHHC..EEEE--TT-HHHHHHHHHHHT-SEEEE--S CS
   Epimerase  2 lVtGatGfiGsalvkallekg.yevigldrlssasntarledl..elveldltdrsalerlfkeeqpdavihlAa 73
                lV+G++Gf+G++++k+  + g   v+ l+r+ +  + +  e +  ++v ++ +d+  +++++   q dav+h+ +
  KOO25343.1 14 LVIGGNGFVGRQVCKYAVRSGkFAVTSLSRRGECPKPNDPELAsvTWVAGNALDKPTVDKYVG--QSDAVVHAIG 86
                9********************666*******88888776665588******************..9******944 PP

  == domain 2  score: 0.3 bits;  conditional E-value: 0.13
                 EGGGGTSCSSSSBSTCSTTS----SSHHHHHHHHHHHHHHHHHHHHT-EEEEEEES CS
   Epimerase 115 SsevYGkdaeqpkeettltgplkpnspYaaaKlageklveayaaqyglnaiilrlf 170
                 S++  G ++ q   e+++    +  + Y +aK+a+e  + +   ++ l+ +i+r++
  KOO25343.1 151 SCAESGWPDVQ-FGEQVEAAAPEWLKRYLVAKRAVEAELASS--TGSLRPVIVRPS 203
                 34555655555.66666666778888999*****99988864..666788888886 PP

>> 3Beta_HSD  3-beta hydroxysteroid dehydrogenase/isomerase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.8   0.0   1.1e-07   0.00032       1      76 [.      14      87 ..      14      99 .. 0.85

  Alignments for each domain:
  == domain 1  score: 19.8 bits;  conditional E-value: 1.1e-07
   3Beta_HSD  1 vvtGgaGFlGralvkeLvrleelkevrvlDlrespelleelskvnvkkviegDvtdkdkleealegvdvvihlasl 76
                +v+Gg GF+Gr+++k  vr ++   v +l  r + ++ ++ +   v+  + g  +dk+++++ + ++d+v+h  +l
  KOO25343.1 14 LVIGGNGFVGRQVCKYAVRSGK-FAVTSLSRRGECPKPNDPELASVT-WVAGNALDKPTVDKYVGQSDAVVHAIGL 87
                69*******************6.889999888777776666666665.9***********************8664 PP

>> Sacchrp_dh_NADP  Saccharopine dehydrogenase NADP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.0   1.8e-05     0.055       2      78 ..      14      86 ..      13      93 .. 0.86

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 1.8e-05
                     EEE--.SHHHHHHHHHHHCTCCT-GEEEEEESSHHHHHHHHCHHTTTCEEEEE--TTTHHHHHHHHHTTSSEEEE-SS CS
  Sacchrp_dh_NADP  2 liiGa.GsvGqavaellarhfdvdaeitvadrskeklealaakalgvrfeaialdaenyeavLaallkegdlvvnlsp 78
                     l+iG+ G+vG+ v ++ +r++++   +t  +r  e      ++    +++ +a +a +++  +++++ + d+vv++++
       KOO25343.1 14 LVIGGnGFVGRQVCKYAVRSGKF--AVTSLSRRGEC--PKPNDPELASVTWVAGNALDKPT-VDKYVGQSDAVVHAIG 86
                     89*********************..99999999998..44445577888889999999998.9999*******99986 PP

>> NmrA  NmrA-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   3.6e-05      0.11       2      73 ..      14      86 ..      13      96 .. 0.93

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 3.6e-05
                EESSTTSHHHHHHHHHHHH.HT-EEEEEES-S-SHHHHHHHHSTTEEEES-TT-HHHHHHHHTT-SEEEE--- CS
        NmrA  2 lviGaTGrqGksvvrallk.aghkvralvRdtkselakslkeaGvelvkgdlddkeslvealkgvdvvfsvtg 73
                lviG+ G  G++v +++++  ++ v  l R  +  + +  + a v+ v+g++ dk  +++ + ++d+v  ++g
  KOO25343.1 14 LVIGGNGFVGRQVCKYAVRsGKFAVTSLSRRGECPKPNDPELASVTWVAGNALDKPTVDKYVGQSDAVVHAIG 86
                8*****************9678***********999999999**************************98876 PP

>> KR  KR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   4.9e-05      0.15       4      41 ..      14      51 ..      12      89 .. 0.78

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 4.9e-05
                EEETTTSHHHHHHHHHHHHHHS-EEEEE-SS..--HHH CS
          KR  4 litGGlGgLGlelarwlaekgarhlvllsRsaaadeds 41
                l++GG G +G+++++  +++g+  +  lsR+++  + +
  KOO25343.1 14 LVIGGNGFVGRQVCKYAVRSGKFAVTSLSRRGECPKPN 51
                8******************************8544433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (273 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       284  (0.0158403); expected 358.6 (0.02)
Passed bias filter:                      272  (0.015171); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.46u 0.27s 00:00:00.73 Elapsed: 00:00:00.44
# Mc/sec: 1881.76
//
Query:       KOO25344.1  [L=423]
Description: hypothetical protein Ctob_001200 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.9e-28   98.0   0.0    1.5e-25   90.3   0.1    2.2  2  Cupin_8   Cupin-like domain
     0.0028   17.2   0.1      0.061   12.8   0.0    2.6  2  Cupin_4   Cupin superfamily protein
     0.0045   17.4   0.0      0.015   15.7   0.0    1.9  2  JmjC      JmjC domain, hydroxylase
  ------ inclusion threshold ------
        0.5   10.6   0.1        0.5   10.6   0.1    2.3  2  DUF3586   Protein of unknown function (DUF3586)


Domain annotation for each model (and alignments):
>> Cupin_8  Cupin-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.6   0.0    0.0026        12       3      39 ..      87     122 ..      85     131 .. 0.80
   2 !   90.3   0.1   3.4e-29   1.5e-25     127     250 ..     202     319 ..     139     322 .. 0.87

  Alignments for each domain:
  == domain 1  score: 5.6 bits;  conditional E-value: 0.0026
     Cupin_8   3 effreyvakskPviikgalkdwpalqkwtddeylley 39 
                  f++++va  +Pv++ ga+   +   +wtd ++l ++
  KOO25344.1  87 VFYEKHVAAAEPVVLAGAAAAATGGVAWTD-DFLSRR 122
                 467***************998888888984.666555 PP

  == domain 2  score: 90.3 bits;  conditional E-value: 3.4e-29
     Cupin_8 127 gkkpeavnlWlGnsasvsslHkDhyeNlycvvrGrKkftLfpPsdapflyeaslsptedgtvvssvdveepdlekfprlkdakkalevtlnaGevLylP 225
                  ++ +++ lW++  +++s lH D  +Nl+ +v G+K + LfpPs+++++y   + +       s+v++e++dl+k p + + +  ++++l+ G++L++P
  KOO25344.1 202 HESVHETRLWMSSGNTTSELHIDTKDNLMLQVFGTKSIYLFPPSQSHKMYMDYHVR----YGESPVNPERVDLDKWPMFAQLEGGMVAHLRGGDALFIP 296
                 34456789******************************************996433....45699*****************9**************** PP

     Cupin_8 226 alWfHeVkslaeeplhlavnywydm 250
                 ++W+H++++  +e  ++av + +++
  KOO25344.1 297 EGWWHQIRTG-PER-NAAVTWEFEP 319
                 ********77.675.9****99986 PP

>> Cupin_4  Cupin superfamily protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.8   0.0   1.4e-05     0.061     123     198 ..     215     305 ..     194     319 .. 0.65
   2 ?   -1.3   0.0      0.27   1.2e+03      31      71 ..     356     391 ..     325     407 .. 0.59

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 1.4e-05
                 TTBBSS-SEE-SSEEEEEEEEC-EEEEEE-.................SCCCTTSSSEE--TTCCG--...S-SEEEEE-TT-EEEE-TT-EEEEEB CS
     Cupin_4 123 ggsqgvgpHyDdyDVfllQleGrkrWrvyk.................ptvpelelkseeplkildef...epvedfvLepGDlLYlPrgviHqgva 198
                 g+ ++   H+D  D ++lQ+ G+k   +                   +        ++ +l+   +f   e      L+ GD L++P g++Hq ++
  KOO25344.1 215 GN-TTSELHIDTKDNLMLQVFGTKSIYLFPpsqshkmymdyhvrygeS----PVNPERVDLDKWPMFaqlEGGMVAHLRGGDALFIPEGWWHQIRT 305
                 44.666789999999999999999866665777776665554422221....2222222333333332113333456999*************887 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 0.27
                 HHHHCCHHCHHCCC.EECTCCEEEEECCCCEEEE-SSB-SC CS
     Cupin_4  31 dLaeLaeeeevearlikgerdkaewkvsrgpleerrlrklp 71 
                 +  ++a++e + ar      d+ +++ s+g++ +  +r +p
  KOO25344.1 356 RGGPIACNETLPARTT---ADTYKCRQSTGEFCT--FRCIP 391
                 4567999999999877...677888888998888..55444 PP

>> JmjC  JmjC domain, hydroxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.0   3.3e-06     0.015       2     103 ..     210     305 ..     209     317 .. 0.80
   2 ?   -3.2   0.0       2.4   1.1e+04      80      90 ..     374     384 ..     370     396 .. 0.81

  Alignments for each domain:
  == domain 1  score: 15.7 bits;  conditional E-value: 3.3e-06
                 EEEE-TT-EEEEE--GGG-EEEEEEEEES-EEEEEE-GGGHHHHHHHHHHHHHCCSTTG.CCTTTCEE-HHHHHHTT---EEEEE-TT-EEEE-TT-EE CS
        JmjC   2 lylgmpksttpwhiedqglySinylhfgapkvWyiipeekkeklekvlskknskeqpdl.lrhkstlispkqlekegipvyrfvqkpgefVfvfpgayH 99 
                 l +++ ++t   hi++++ +   +l + ++k  y++p+++++k+   ++ + ++e p    r   ++++   + ++       + + g+++f++ g++H
  KOO25344.1 210 LWMSSGNTTSELHIDTKDNL---MLQVFGTKSIYLFPPSQSHKMYMDYHVR-YGESPVNpERVDLDKWPMFAQLEG---GMVAHLRGGDALFIPEGWWH 301
                 5688899***********99...5677778889************999999.577888768888888887776666...467899************** PP

                 EEEE CS
        JmjC 100 svfn 103
                 +  +
  KOO25344.1 302 QIRT 305
                 9765 PP

  == domain 2  score: -3.2 bits;  conditional E-value: 2.4
                 -EEEEE-TT-E CS
        JmjC  80 vyrfvqkpgef 90 
                 +y++ q  gef
  KOO25344.1 374 TYKCRQSTGEF 384
                 79999999998 PP

>> DUF3586  Protein of unknown function (DUF3586)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.1   0.00011       0.5      20      52 ..      30      62 ..      13      73 .. 0.84
   2 ?    0.1   2.0      0.22   9.9e+02       8      49 ..     359     401 ..     352     408 .. 0.65

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00011
     DUF3586 20 svtvtqtlCtdkgCrkgCkktvlptneClkngg 52
                + + tq  C  ++C++  +++++++ +C +++g
  KOO25344.1 30 RPAKTQRECHVHKCERWPSDETFTARKCHRRKG 62
                556689************************998 PP

  == domain 2  score: 0.1 bits;  conditional E-value: 0.22
     DUF3586   8 PttttktkAPkPsvtvtqtlC...tdkgCrkgCkktvlptneClk 49 
                 P    +++ P  ++t    +C   t+++C+  C      t++ l+
  KOO25344.1 359 P-IACNETLPA-RTTADTYKCrqsTGEFCTFRCIPHSCATHQLLR 401
                 4.345667777.777777777444567888888777777766665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (423 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       461  (0.0257125); expected 358.6 (0.02)
Passed bias filter:                      361  (0.020135); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.50u 0.30s 00:00:00.80 Elapsed: 00:00:00.44
# Mc/sec: 2872.74
//
Query:       KOO25345.1  [L=500]
Description: hypothetical protein Ctob_001197 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
  ------ inclusion threshold ------
      0.032   14.3   9.1        1.4    9.1   1.7    2.6  2  TolA_bind_tri    TolA binding protein trimerisation
      0.034   13.9   1.4       0.49   10.1   0.2    2.1  2  Collagen_mid     Bacterial collagen, middle region
       0.13   12.7   0.5         20    5.7   0.1    3.6  3  FlaC_arch        Flagella accessory protein C (FlaC)
       0.17   12.1   0.5       0.61   10.3   0.5    1.9  1  DUF5446          Family of unknown function (DUF5446)
       0.17   11.7   0.2       0.35   10.7   0.2    1.5  1  Glyco_hyd_65N_2  Glycosyl hydrolase family 65, N-terminal dom
        0.2   10.9   5.6       0.14   11.4   1.9    2.1  2  HemX             HemX, putative uroporphyrinogen-III C-methyl
       0.26   11.4   1.1        7.6    6.7   0.1    2.5  2  DUF2730          Protein of unknown function (DUF2730)
       0.44   10.6   9.9        4.5    7.3   0.2    2.5  2  CENP-F_leu_zip   Leucine-rich repeats of kinetochore protein 
        2.1    7.2   6.1        7.4    5.3   6.1    1.7  1  Spc7             Spc7 kinetochore protein


Domain annotation for each model (and alignments):
>> TolA_bind_tri  TolA binding protein trimerisation
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.1   1.7    0.0007       1.4      16      68 ..      17      69 ..      15      77 .. 0.86
   2 ?    8.8   0.9   0.00082       1.6      29      52 ..     108     131 ..     103     136 .. 0.92

  Alignments for each domain:
  == domain 1  score: 9.1 bits;  conditional E-value: 0.0007
  TolA_bind_tri 16 rsqlllelqqqlealqqelreLRGqiEelqyqleqleerQrdlYldlDerlrk 68
                   +++++l lq qle+  + l++ R  +E  +++  q+e r  +l  +l+++  +
     KOO25345.1 17 HEESQLSLQLQLEQAMAALQTERARVEAEANKHAQAEARLSQLESELEKLRPR 69
                   6789999999999999999999******************9999999887655 PP

  == domain 2  score: 8.8 bits;  conditional E-value: 0.00082
  TolA_bind_tri  29 alqqelreLRGqiEelqyqleqle 52 
                    +lq  l+eLRG+ E+lq  ++ql+
     KOO25345.1 108 KLQLNLSELRGEREKLQRAISQLQ 131
                    58999*****************97 PP

>> Collagen_mid  Bacterial collagen, middle region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.2   0.00024      0.49      63     190 ..     258     293 ..     233     300 .. 0.59
   2 ?    2.5   0.1     0.053   1.1e+02      36     112 ..     352     429 ..     334     434 .. 0.73

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.00024
  Collagen_mid  63 ssagslVsaLgtgplaplapvttpvggvvstvgqavtsagttLttalssgpvqqltqqlssaitPitstvtgttqtvgtatglgapvngLLgtvGga 159
                    +                                                                                           vG+ 
    KOO25345.1 258 DA-------------------------------------------------------------------------------------------VGEN 263
                   44...........................................................................................5555 PP

  Collagen_mid 160 vasaGtkvtgatnnpvvadlGgvvtavGntv 190
                   va+ G+ v+ ++ +++  ++G+ vt+vG+ +
    KOO25345.1 264 VAKFGDAVG-ENVAKLGDAVGENVTKVGDSI 293
                   555555555.444555555555555555544 PP

  == domain 2  score: 2.5 bits;  conditional E-value: 0.053
  Collagen_mid  36 qlgetanpvGtTlastgnvvtelgeavssagslVsaLgtgplaplapvt.tpvggvvstvgqavtsagttLttalssg 112
                   +lge    +   ++ + ++ ++lg  v +++ +V++  +g+lap+a+++ +   ++ s+  q+ ++ag +L +++ +g
    KOO25345.1 352 KLGEERAKLEAQIGRLVGMGQNLGLNVREMAAAVKSDMDGQLAPIASLAaSEWEQITSEWDQKAKEAGMKLREMVADG 429
                   566666666666667777778999999999999999999999999887524566666677777777777777766655 PP

>> FlaC_arch  Flagella accessory protein C (FlaC)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.5   0.3     0.098   1.9e+02      19      33 ..      52      66 ..      27      72 .. 0.52
   2 ?    5.7   0.1    0.0098        20      11      42 ..     108     139 ..     104     143 .. 0.86
   3 ?   -2.7   0.0       4.1   8.2e+03      16      40 ..     228     253 ..     224     267 .. 0.75

  Alignments for each domain:
  == domain 1  score: 2.5 bits;  conditional E-value: 0.098
   FlaC_arch 19 vkkeneelsksveel 33
                +++ +++l++++e+l
  KOO25345.1 52 AEARLSQLESELEKL 66
                333333444444333 PP

  == domain 2  score: 5.7 bits;  conditional E-value: 0.0098
   FlaC_arch  11 klsteletvkkeneelsksveelkenVkdlls 42 
                 kl+ +l+ ++ e e+l+  + +l+ +V+ +ls
  KOO25345.1 108 KLQLNLSELRGEREKLQRAISQLQPSVEHVLS 139
                 56678999999999999999999999999997 PP

  == domain 3  score: -2.7 bits;  conditional E-value: 4.1
   FlaC_arch  16 letvkkeneelsksveelkenV.kdl 40 
                 l t+++  +e+  +++ l ++V +d+
  KOO25345.1 228 LRTARDRGDEIAIELKGLGDKVcQDV 253
                 67888999999999988888886666 PP

>> DUF5446  Family of unknown function (DUF5446)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.5    0.0003      0.61      33      57 ..      42      66 ..      15      74 .. 0.74

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.0003
     DUF5446 33 neteaekeekeeerldllekElkdL 57
                 e ea k+ + e+rl++le+El+ L
  KOO25345.1 42 VEAEANKHAQAEARLSQLESELEKL 66
                4678889999************988 PP

>> Glyco_hyd_65N_2  Glycosyl hydrolase family 65, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.2   0.00017      0.35      35      78 ..       3      55 ..       1      68 [. 0.88

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00017
  Glyco_hyd_65N_2 35 qlNedtlWsGgprsnnnyn.........aaeaLeeiRallfagkykeaeelak 78
                      lNed +Ws gp+ +++++         a +aL++ Ra + a+ +k+a++ a+
       KOO25345.1  3 ALNEDATWSAGPFAHEESQlslqlqleqAMAALQTERARVEAEANKHAQAEAR 55
                     69*****************9*99999999999999999999999999988765 PP

>> HemX  HemX, putative uroporphyrinogen-III C-methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   1.9   7.2e-05      0.14      35      81 ..      23      69 ..       8      78 .. 0.83
   2 ?    0.4   0.1      0.15     3e+02      72     102 ..     110     140 ..      95     147 .. 0.73

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 7.2e-05
        HemX 35 aevaelqqqlaaleqqlaqveaekeqkqeleerlqqlaeklealeke 81
                + + +l+q++aal+++ a+veae++++++ e+rl ql+++le+l+ +
  KOO25345.1 23 SLQLQLEQAMAALQTERARVEAEANKHAQAEARLSQLESELEKLRPR 69
                333789************************************99865 PP

  == domain 2  score: 0.4 bits;  conditional E-value: 0.15
        HemX  72 aeklealekeleqlqkqleelqqqlskvsga 102
                 + +l++l+ e e+lq+++++lq  +++v +a
  KOO25345.1 110 QLNLSELRGEREKLQRAISQLQPSVEHVLSA 140
                 5567888889999999999999999888776 PP

>> DUF2730  Protein of unknown function (DUF2730)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.0   0.1     0.055   1.1e+02      32      59 ..      39      66 ..      20      74 .. 0.73
   2 ?    6.7   0.1    0.0038       7.6      67      94 ..     108     135 ..     101     140 .. 0.86

  Alignments for each domain:
  == domain 1  score: 3.0 bits;  conditional E-value: 0.055
     DUF2730 32 redleklaekveendkrlteletkvenL 59
                r  +e  a+k ++ + rl++le+++e+L
  KOO25345.1 39 RARVEAEANKHAQAEARLSQLESELEKL 66
                4445555566777888999999999887 PP

  == domain 2  score: 6.7 bits;  conditional E-value: 0.0038
     DUF2730  67 kLkllladlrgelkaleaevrqlshqvd 94 
                 kL+l+l++lrge ++l++ ++ql+  v+
  KOO25345.1 108 KLQLNLSELRGEREKLQRAISQLQPSVE 135
                 68999*****************987665 PP

>> CENP-F_leu_zip  Leucine-rich repeats of kinetochore protein Cenp-F/LEK1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.3   4.9    0.0091        18      37      79 ..      25      67 ..      16      72 .. 0.51
   2 ?    7.3   0.2    0.0023       4.5      70      97 ..     108     135 ..     101     141 .. 0.87

  Alignments for each domain:
  == domain 1  score: 5.3 bits;  conditional E-value: 0.0091
  CENP-F_leu_zip 37 eenqekvileaEtskaevetlkeeieelaeelreleldLvalr 79
                    + ++e+++    t++a ve+  ++  + +++l++le++L++lr
      KOO25345.1 25 QLQLEQAMAALQTERARVEAEANKHAQAEARLSQLESELEKLR 67
                    3334444444444444444444444444566777777776666 PP

  == domain 2  score: 7.3 bits;  conditional E-value: 0.0023
  CENP-F_leu_zip  70 eleldLvalrsekeeLekelqkkqervs 97 
                     +l+l+L++lr e+e+L++ + + q  v+
      KOO25345.1 108 KLQLNLSELRGEREKLQRAISQLQPSVE 135
                     589999*************999998886 PP

>> Spc7  Spc7 kinetochore protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.3   6.1    0.0037       7.4     139     251 ..      23     142 ..      18     158 .. 0.68

  Alignments for each domain:
  == domain 1  score: 5.3 bits;  conditional E-value: 0.0037
        Spc7 139 gLkegleenlegleedkelLekqeeeldellpeleeekaeleeeleklqe..............aaeelesidkeeLeelreelaelkaeieekkkela 223
                 +L+ +le+ +++l+++++++e++ ++  ++  +     ++le+elekl+                +  + s d++ L++ r++    + ++   + +l+
  KOO25345.1  23 SLQLQLEQAMAALQTERARVEAEANKHAQAEAR----LSQLESELEKLRPrvscaapdsacaphTSSTVWSDDPTPLRSSRSAAGLSQLKL---QLNLS 114
                 688889999999999999999888887665554....555666666666533335555554333333333355777777766544444444...47899 PP

        Spc7 224 elqeqleeleekieelkeqkseleeeia 251
                 el+ ++e+l+ +i++l+ + +++ ++  
  KOO25345.1 115 ELRGEREKLQRAISQLQPSVEHVLSAFD 142
                 9999999999999999999999888766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (500 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1152  (0.0642534); expected 358.6 (0.02)
Passed bias filter:                      636  (0.0354733); expected 358.6 (0.02)
Passed Vit filter:                       103  (0.00574488); expected 17.9 (0.001)
Passed Fwd filter:                        13  (0.000725082); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.66u 0.26s 00:00:00.92 Elapsed: 00:00:00.43
# Mc/sec: 3479.06
//
Query:       KOO25346.1  [L=241]
Description: 3 -5 exonuclease [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    6.4e-13   48.8   0.0    1.1e-11   44.8   0.0    2.0  1  DNA_pol_A_exo1  3'-5' exonuclease
  ------ inclusion threshold ------
      0.024   14.6   9.9      0.052   13.6   9.9    1.5  1  Gly-zipper_Omp  Glycine zipper
      0.072   13.0   0.1        1.3    9.0   0.0    2.1  2  TMEM65          Transmembrane protein 65
       0.31   10.4   1.4       0.38   10.1   1.4    1.2  1  DUF3482         Domain of unknown function (DUF3482)


Domain annotation for each model (and alignments):
>> DNA_pol_A_exo1  3'-5' exonuclease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.8   0.0   2.4e-15   1.1e-11      14     165 ..       7     206 ..       2     214 .. 0.84

  Alignments for each domain:
  == domain 1  score: 44.8 bits;  conditional E-value: 2.4e-15
                     HHHHTTSS......EEEEEEEEE-SSSTTS..SEEEEEEEEECSSEEEEEECTTTTTT-HGHHHHHHHT-TTSEEEESSHHHHHHHHHHH..... CS
  DNA_pol_A_exo1  14 ieelknlk......vvavDtEttsldlisa..tlvliliqlgekeeayiidplelgddvalealkrlledenitkvghnakfDlevlard..... 95 
                     +++l+ +       v+++DtEt+++  +     + ++l+ql + e a+++  + ++     ++l++ll+d+++t vg+ +   ++ l++      
      KOO25346.1   7 CAALRRSGelhgrvVIGFDTETKPTFRAGEknLNPICLVQLATPEVAVLFRLVRHQPL--PSPLRELLSDPTLTLVGQEIGREIAQLHESdvrag 99 
                     555555555556669***********9887434569***************9999995..9****************************889999 PP

                     .HTS--SSEEEHHHHHHHTTHSTT....................................SSHHHHHHHHHS.B---GHCCTTSSTTTSSS-HHH CS
  DNA_pol_A_exo1  96 .fgielenlfdtmlaayvldyers....................................hsLdsLaekylg.dleldkeeqiakwqkarpllee 152
                       g  +++l  t +a++      s                                     + +  ++ +lg  + + k+ q+++w     l+e 
      KOO25346.1 100 gLGCTPPRLTATPAASADAPVATSvgavvgastgavvgaasvgatlielapsaraagclcTGVAGFVAALLGlRMHKPKSLQMSNWE-MPTLSEA 193
                     9777777777775554444444446688888899999999999999999999********************999999*********.******* PP

                     HHHHHHHHHHTHH CS
  DNA_pol_A_exo1 153 qllYAaeDadvll 165
                     ql+YAa+Da+v  
      KOO25346.1 194 QLRYAATDAWVCW 206
                     **********975 PP

>> Gly-zipper_Omp  Glycine zipper
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   9.9   1.2e-05     0.052       1      38 [.     124     170 ..     124     177 .. 0.73

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 1.2e-05
  Gly-zipper_Omp   1 iGaaiGAaaGaliGgavggr..........gtGaliGAavGaavGgli 38 
                     +Ga++GA +Ga++G+a+ g+          ++G+l+ +++G +  +l 
      KOO25346.1 124 VGAVVGASTGAVVGAASVGAtlielapsarAAGCLCTGVAGFV-AALL 170
                     8**************9765556666666669999998877766.4555 PP

>> TMEM65  Transmembrane protein 65
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.0   0.0    0.0003       1.3      58     103 ..      88     139 ..      75     147 .. 0.79
   2 ?    2.1   0.0     0.041   1.8e+02      39      82 ..     152     200 ..     139     209 .. 0.61

  Alignments for each domain:
  == domain 1  score: 9.0 bits;  conditional E-value: 0.0003
      TMEM65  58 vealaer......lglkkpkltkeqrklksvrlasalgkalGvtiGcllGml 103
                 + +l e       lg++ p+lt++ ++++ + +a+++g+++G   G ++G +
  KOO25346.1  88 IAQLHESdvraggLGCTPPRLTATPAASADAPVATSVGAVVGASTGAVVGAA 139
                 444443344445678899*******************************986 PP

  == domain 2  score: 2.1 bits;  conditional E-value: 0.041
      TMEM65  39 aAalGnlvsdvaGvvlggvvealaer.....lglkkpkltkeqrklksv 82 
                 a a G l+++vaG v + +  ++ +       + + p+l+++q++ +++
  KOO25346.1 152 ARAAGCLCTGVAGFVAALLGLRMHKPkslqmSNWEMPTLSEAQLRYAAT 200
                 4556666666666655544333333223222667888888888876665 PP

>> DUF3482  Domain of unknown function (DUF3482)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   1.4   8.5e-05      0.38     148     196 ..     120     168 ..     111     223 .. 0.72

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 8.5e-05
     DUF3482 148 lslgaGaaaGAaaGagiDlavgGltLGaaaaiGalaGglaatlkrygkr 196
                 +++  Ga+ GA +Ga + +a +G+tL   a    +aG l + +  +  +
  KOO25346.1 120 VATSVGAVVGASTGAVVGAASVGATLIELAPSARAAGCLCTGVAGFVAA 168
                 67889*********************86665555555555444433333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (241 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       463  (0.0258241); expected 358.6 (0.02)
Passed bias filter:                      314  (0.0175135); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.45u 0.26s 00:00:00.71 Elapsed: 00:00:00.42
# Mc/sec: 1723.66
//
Query:       KOO25347.1  [L=711]
Description: hypothetical protein Ctob_001195 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      0.005   17.6   0.0     0.0089   16.8   0.0    1.5  1  Filamin   Filamin/ABP280 repeat
  ------ inclusion threshold ------
        1.5    9.3   4.8        1.3    9.5   1.0    2.7  2  DUF3037   Protein of unknown function (DUF3037)


Domain annotation for each model (and alignments):
>> Filamin  Filamin/ABP280 repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   0.0     1e-06    0.0089      62     101 ..     625     664 ..     476     666 .. 0.82

  Alignments for each domain:
  == domain 1  score: 16.8 bits;  conditional E-value: 1e-06
                 EEEEEEE-SSSEEEEEE--SSSCEEEEEEEETTCE-TTSS CS
     Filamin  62 vkievvdnedgtytvsYtpeepgtyrvsvkldgkhiggsP 101
                  ++   d +dgty  ++ + +pg + v vk+dg h+ gsP
  KOO25347.1 625 QHASWADLGDGTYLLRWAADAPGVFDVFVKIDGLHVLGSP 664
                 45557899*******************************9 PP

>> DUF3037  Protein of unknown function (DUF3037)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   1.0   0.00014       1.3      12      65 ..      50     128 ..      45     186 .. 0.59
   2 ?   -1.9   0.1       0.5   4.5e+03      95     103 ..     247     255 ..     216     319 .. 0.60

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 0.00014
     DUF3037  12 reEfvNvGVvlfskkegflkvrleldeaRlralfpel...............dlealeeelkaleeic.............e 65 
                 ++E +N++Vv++ +++g+ ++ + +d+a+l      +                   le++ +++++               +
  KOO25347.1  50 ADELLNAAVVAVTRERGYGGMTIDDDKAKLCDALGFAiaeadelraalgeqpV---LEQMRQRVQQAQldaarheegievvR 128
                 68*************************99976664334544544444442221...22222222222233333333444440 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 0.5
     DUF3037  95 tsevhtglt 103
                 + e+++  +
  KOO25347.1 247 FAEMRALSS 255
                 333332222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (711 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       828  (0.0461822); expected 358.6 (0.02)
Passed bias filter:                      328  (0.0182944); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.60u 0.29s 00:00:00.88 Elapsed: 00:00:00.44
# Mc/sec: 4832.76
//
Query:       KOO25348.1  [L=538]
Description: trafficking protein particle complex 8 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (538 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1445  (0.0805957); expected 358.6 (0.02)
Passed bias filter:                      749  (0.0417759); expected 358.6 (0.02)
Passed Vit filter:                        65  (0.00362541); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.62u 0.28s 00:00:00.90 Elapsed: 00:00:00.42
# Mc/sec: 3849.19
//
Query:       KOO25349.1  [L=808]
Description: carbamoyl-phosphate synthase l chain ATP-binding protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.5e-65  220.0   0.0    3.9e-65  219.3   0.0    1.3  1  CPSase_L_D2      Carbamoyl-phosphate synthase L chain, ATP bi
    5.4e-44  149.2   1.8    1.7e-43  147.7   0.1    2.5  3  Biotin_carb_N    Biotin carboxylase, N-terminal domain
    2.7e-30  104.6   0.0    3.7e-20   72.0   0.0    3.3  3  Biotin_carb_C    Biotin carboxylase C-terminal domain
    1.7e-13   50.1   0.1    3.9e-13   49.0   0.1    1.6  1  Biotin_lipoyl    Biotin-requiring enzyme
    1.9e-07   30.8   0.0    3.8e-07   29.8   0.0    1.4  1  Dala_Dala_lig_C  D-ala D-ala ligase C-terminus
    1.1e-06   28.4   0.2    2.8e-06   27.1   0.2    1.7  1  Biotin_lipoyl_2  Biotin-lipoyl like
    0.00017   22.3   0.8       0.61   10.8   0.1    3.2  3  HlyD_3           HlyD family secretion protein
    0.00081   19.0   0.0      0.002   17.7   0.0    1.6  1  ATP-grasp        ATP-grasp domain
  ------ inclusion threshold ------
       0.02   14.1   0.1      0.073   12.3   0.0    1.8  2  HlyD_D23         Barrel-sandwich domain of CusB or HlyD membr


Domain annotation for each model (and alignments):
>> CPSase_L_D2  Carbamoyl-phosphate synthase L chain, ATP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  219.3   0.0   1.9e-68   3.9e-65       2     209 ..     118     330 ..     117     332 .. 0.94

  Alignments for each domain:
  == domain 1  score: 219.3 bits;  conditional E-value: 1.9e-68
                  HHHHHHHHHHTT-BBSSEECSSBSS....HHHHHHHHHHH-SSEEEEETTCCTTTTEEEESSHHHHHHHHHHHHHHHHHHHSTS-EEEEE--SSSEEE CS
  CPSase_L_D2   2 kesakealkkinvpvvpssaapvet....leealaiakeigyPviikaafglGGkGmrvarneeelaelvkkalaeakaafgnkqvlvekslkgpkei 95 
                  k+++k+++++++vp+ p+ +++ ++    + eal++    g Pv+ ka  g+GGkGmr++ +++ela ++++a++ea ++fg++++lve++l+  ++i
   KOO25349.1 118 KDASKRLMEAAGVPLLPGYHGIDQEfatlEAEALKCGLADGKPVLFKAVLGGGGKGMRIVCSRAELAGAIESARREALSSFGDDRLLVERYLSSARHI 215
                  678899************998644311114578888888899******************************************************** PP

                  EEEEEEETTS-EEEEEEEEECCECTCCCCEEEES-SS--HHHHHHHHHHHHHHHHHHT-EEEEEEEEEEET.TTTEEEEEEEESS--CCHHHHHHHHS CS
  CPSase_L_D2  96 EvevlrDakgnvitvcerenslqlrtqkvievAPsqtLtdeerqalreaavkvvrevgvvgagtveflldp.kskeyyviEvNtRlsvesalaekaTG 192
                  Ev+v  D++g +++++er++s+q+r+qkv+e+AP++ ++++ r++l++aav+++ +v+++gagtvef+ d+ + ++++++E+NtRl+ve++++e++ G
   KOO25349.1 216 EVQVFCDQHGGAVHLFERDCSVQRRHQKVLEEAPAPGVDAKLRHQLGQAAVRAALAVNYEGAGTVEFIADAeDPTNFFFMEMNTRLQVEHPVTEMVSG 313
                  **********************************************************************956799********************** PP

                  --HHHHHHHHHTT--GC CS
  CPSase_L_D2 193 ldlvkeaakialgekLe 209
                  +dlv++++++a+ge+L+
   KOO25349.1 314 IDLVEWQLRVAAGEPLP 330
                  ***************97 PP

>> Biotin_carb_N  Biotin carboxylase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  147.7   0.1   8.4e-47   1.7e-43       1     110 []       3     112 ..       3     112 .. 0.99
   2 ?   -0.5   0.0      0.92   1.8e+03      11      52 ..     262     304 ..     259     316 .. 0.80
   3 ?   -3.2   0.1       6.4   1.3e+04       4      34 ..     707     737 ..     704     750 .. 0.70

  Alignments for each domain:
  == domain 1  score: 147.7 bits;  conditional E-value: 8.4e-47
                    ---EEEE---HHHHHHHHHHHHHTT-EEEEEEEGGGTTSHHHHHSSEEEEEESSTTCCGGG-HHHHHHHHHHTT-SEEE--SSTTTT-HHHHHHHH CS
  Biotin_carb_N   1 kikkvlianrGeiAvriiravrelgietvavyseedanslhvreadeavelgpasasesYlniekivkaakesgadavhpGyGflsEnaefaeave 96 
                    +++++lianrGeiA+r++r++++lg++ vav+se+d+ ++hvr+ad+av++g++++++sYl+i+++++aa ++ga+a+hpGyGflsEna+fa+av+
     KOO25349.1   3 MFRRILIANRGEIACRVMRTAQRLGVSCVAVFSEADRLCQHVRLADAAVCVGGTASKDSYLRIDRVIDAALSTGAEAIHPGYGFLSENAAFADAVR 98 
                    799********************************************************************************************* PP

                    HTT-EESSS-HHHH CS
  Biotin_carb_N  97 eagivfiGPsaeal 110
                    +ag++fiGPs +a+
     KOO25349.1  99 AAGLTFIGPSGQAM 112
                    **********9998 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 0.92
                    HHHHHHHHHHHHHTT-EEEEEEEGG.GTTSHHHHHSSEEEEEE CS
  Biotin_carb_N  11 GeiAvriiravrelgietvavysee.danslhvreadeavelg 52 
                    G++Avr + av+  g  tv  ++++ d +  +  e ++ ++++
     KOO25349.1 262 GQAAVRAALAVNYEGAGTVEFIADAeDPTNFFFMEMNTRLQVE 304
                    899****************988887477777777777766665 PP

  == domain 3  score: -3.2 bits;  conditional E-value: 6.4
                    EEEE---HHHHHHHHHHHHHTT-EEEEEEEG CS
  Biotin_carb_N   4 kvlianrGeiAvriiravrelgietvavyse 34 
                    +vl+ + +++A  ++ ++   + +  av+s+
     KOO25349.1 707 SVLVQDAAQMAQLVLSSADATAARQAAVHSP 737
                    5777777777777777777777777777765 PP

>> Biotin_carb_C  Biotin carboxylase C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.1   0.0   8.5e-10   1.7e-06       1      44 [.     344     403 ..     344     405 .. 0.97
   2 !   72.0   0.0   1.9e-23   3.7e-20      39     108 .]     450     519 ..     435     519 .. 0.93
   3 ?   -0.4   0.0      0.61   1.2e+03      13      33 ..     735     755 ..     727     759 .. 0.86

  Alignments for each domain:
  == domain 1  score: 28.1 bits;  conditional E-value: 8.5e-10
                    EEEEESEETTTTTEE--CE-SEEE--................-STTEEEEE---TT-EE- CS
  Biotin_carb_C   1 eaRinaEdpeknflpssGkvtelelp................egpgvRvdsgveegsevs 44 
                    eaR++aE pe +flp sG+v +l++p                +g+ vR+d+++ eg+ev+
     KOO25349.1 344 EARVYAERPEAGFLPGSGTVYHLRTPmimgdtyvspatrasaAGHAVRLDTAIVEGDEVP 403
                    89********************************************************97 PP

  == domain 2  score: 72.0 bits;  conditional E-value: 1.9e-23
                    TT-EE-TTS-SEEEEEEEEESSHHHHHHHHHHHHHT-EEESS-BSHHHHHHHHH-HHHHHT---TTTCCC CS
  Biotin_carb_C  39 egsevspyyDsllaKlivhgetreealarlrraLaelrieGvktnieflrailedeefakgeldtkflee 108
                    + ++vs +yD+++aKliv+g++r++al+ lrraL + +i G++tn++flr++l++++fa++e++t+f+e+
     KOO25349.1 450 STAQVSVFYDPMIAKLIVRGADRSSALQLLRRALGQWEIVGLPTNVPFLRRVLDTDAFANAEVHTAFIEQ 519
                    45799***************************************************************96 PP

  == domain 3  score: -0.4 bits;  conditional E-value: 0.61
                    TEE--CE-SEEE---STTEEE CS
  Biotin_carb_C  13 flpssGkvtelelpegpgvRv 33 
                     +p +Gk+ ++ + +g+ vR 
     KOO25349.1 735 HSPMPGKIVRVLVAQGQAVRA 755
                    5799***************96 PP

>> Biotin_lipoyl  Biotin-requiring enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.0   0.1   1.9e-16   3.9e-13       3      70 ..     734     796 ..     732     799 .. 0.93

  Alignments for each domain:
  == domain 1  score: 49.0 bits;  conditional E-value: 1.9e-16
                    EEESSSEEEEEE.ECSESSSTTCEE-TTSEEEEEECTTEEEEEEBSSSEEEEEESSTTTEEE-TTCEE CS
  Biotin_lipoyl   3 iksPmiGesveegvvevlvkvGdkVkagqvlaeveamKmemeieapkaGvvkeilvkeGdtvevgdll 70 
                    + sPm+G++v+     vlv++G++V ag++l+++eamKme++++ap + v+  +++ eG+ v +  ll
     KOO25349.1 734 VHSPMPGKIVR-----VLVAQGQAVRAGEPLLVLEAMKMEHTLKAPTDVVIGGVHAAEGQVVAQRALL 796
                    789********.....*********************************************9876665 PP

>> Dala_Dala_lig_C  D-ala D-ala ligase C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.8   0.0   1.9e-10   3.8e-07       1     174 [.     124     299 ..     124     300 .. 0.81

  Alignments for each domain:
  == domain 1  score: 29.8 bits;  conditional E-value: 1.9e-10
                      HHHHTT--B--.EEEEETTHHCH-H-HHHHHHHHHC-SSEEEEESSSSTTTTEEEESSGGGHHHHHHHHHTT......-SCEEEEE--.ESEEE CS
  Dala_Dala_lig_C   1 llkaaGlpvvp.yvvlekeeakeekkellekveeelgypvfVKpareGSSvGvskveseeelkeaieeafky......dekvlvEeai.egrei 86 
                      l++aaG+p  p y  +++e a+ e      k+  + g pv+ K++  G   G+  v s++el+ aie+a +       d + lvE+++ ++r i
       KOO25349.1 124 LMEAAGVPLLPgYHGIDQEFATLEA--EALKCGLADGKPVLFKAVLGGGGKGMRIVCSRAELAGAIESARREalssfgDDRLLVERYLsSARHI 215
                      6788888876548888888877777..45577778899*****************************9987544555699********99**** PP

                      EEEEEETSSCEEEEEEEEE-SSSSS-HHHHHC.TT-EEESS----HHHHHHHHHHHHHHHHHTT--SEEEEEEEEETTT..EEEEEEEES CS
  Dala_Dala_lig_C  87 evavlgneklevsevgeivvkkgfydyeakysddkaqlevpaklekeveekiqelalkaykaldlrGlaRvDfflteeg..eivlnEvNt 174
                      ev v  +++  + ++ e+    ++ + ++k  +++        ++++ ++++ ++a++a  a++ +G + v f+ ++e+  ++++ E+Nt
       KOO25349.1 216 EVQVFCDQHGGAVHLFERDC--SVQRRHQKVLEEAPAP----GVDAKLRHQLGQAAVRAALAVNYEGAGTVEFIADAEDptNFFFMEMNT 299
                      ******88777777776655..4556777776544444....46667789999**********************88764589******9 PP

>> Biotin_lipoyl_2  Biotin-lipoyl like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.1   0.2   1.4e-09   2.8e-06       3      43 ..     732     772 ..     730     792 .. 0.86

  Alignments for each domain:
  == domain 1  score: 27.1 bits;  conditional E-value: 1.4e-09
  Biotin_lipoyl_2   3 vsIaapvsGrVaqlnVkdGqrVkaGdvLaelDsralqlala 43 
                        +++p +G++++++V +Gq V aG  L++l+  + ++ l+
       KOO25349.1 732 AAVHSPMPGKIVRVLVAQGQAVRAGEPLLVLEAMKMEHTLK 772
                      6799***************************9988777665 PP

>> HlyD_3  HlyD family secretion protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.0         2     4e+03      65      84 ..     272     291 ..     253     329 .. 0.66
   2 !   10.8   0.1    0.0003      0.61       2      30 ..     734     762 ..     733     766 .. 0.92
   3 !    8.3   0.1    0.0019       3.7       1      33 [.     770     802 ..     770     808 .] 0.89

  Alignments for each domain:
  == domain 1  score: -1.5 bits;  conditional E-value: 2
      HlyD_3  65 sdytlkgkierisptvdakt 84 
                  +y+  g++e i++  d+++
  KOO25349.1 272 VNYEGAGTVEFIADAEDPTN 291
                 44677899999988555433 PP

  == domain 2  score: 10.8 bits;  conditional E-value: 0.0003
      HlyD_3   2 lrApvdGvvvelnveegevvqagdellei 30 
                 + +p  G++v + v +g+ v+ag++ll +
  KOO25349.1 734 VHSPMPGKIVRVLVAQGQAVRAGEPLLVL 762
                 789**********************9976 PP

  == domain 3  score: 8.3 bits;  conditional E-value: 0.0019
      HlyD_3   1 tlrApvdGvvvelnveegevvqagdelleiipp 33 
                 tl+Ap d v+  +++ eg+vv++++ ll+   +
  KOO25349.1 770 TLKAPTDVVIGGVHAAEGQVVAQRALLLSFQQE 802
                 699************************998765 PP

>> ATP-grasp  ATP-grasp domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.7   0.0     1e-06     0.002      28     146 ..     158     285 ..     126     301 .. 0.80

  Alignments for each domain:
  == domain 1  score: 17.7 bits;  conditional E-value: 1e-06
                 -SCEEEEESSS-CTTTTEEEECTCCGHHCHHHHC........GTTCEEEEE----SEEEEEEEEEETT.C-EEE--EEEEEEETTEEEEEEECEE.-SC CS
   ATP-grasp  28 glpvvvKarrlgydGkGqsvvrseedleqaleal........keekvivEefvpfekElsvlvvrsae.Getafypvvetvqedgilrlsvapae.vse 116
                 g pv+ K ++lg  GkG  +v s+++l  a+e +        ++ +++vE + +  + + v v  +++ G+++ ++    vq++   +l  apa+ v++
  KOO25349.1 158 GKPVLFK-AVLGGGGKGMRIVCSRAELAGAIESArrealssfGDDRLLVERYLSSARHIEVQVFCDQHgGAVHLFERDCSVQRRHQKVLEEAPAPgVDA 255
                 7899999.89999******************9999999**999****************9988876651679999999999988877777777763777 PP

                 HHHHHHHHHHHHHHHHHTSSEEEEEEEEEE CS
   ATP-grasp 117 kaqkkaeeiakkiveeLggvGvfavElFvl 146
                 k  ++  + a +++ ++++ G  +vE+   
  KOO25349.1 256 KLRHQLGQAAVRAALAVNYEGAGTVEFIAD 285
                 89999999******************8765 PP

>> HlyD_D23  Barrel-sandwich domain of CusB or HlyD membrane-fusion
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   3.7e-05     0.073      17      56 ..     729     767 ..     715     773 .. 0.83
   2 ?   -0.6   0.0      0.32   6.3e+02     106     138 ..     766     798 ..     762     801 .. 0.84

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 3.7e-05
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
    HlyD_D23  17 rrlarvsarveGwveklyvnatgdkVkkGqpLaelyspel 56 
                  r+a v++ + G + ++ v   g++V++G+pL+ l++ ++
  KOO25349.1 729 ARQAAVHSPMPGKIVRVLVA-QGQAVRAGEPLLVLEAMKM 767
                 67889999999999999998.9999999999998887665 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 0.32
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
    HlyD_D23 106 qktvtvkapisGvVteknvreGqyvqpgdtlft 138
                 + + t+kap++ v+   +++eGq+v +   l++
  KOO25349.1 766 KMEHTLKAPTDVVIGGVHAAEGQVVAQRALLLS 798
                 5567999******************99877765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (808 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       456  (0.0254337); expected 358.6 (0.02)
Passed bias filter:                      330  (0.0184059); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.64u 0.28s 00:00:00.92 Elapsed: 00:00:00.45
# Mc/sec: 5436.69
//
Query:       KOO25350.1  [L=208]
Description: dopamine beta [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
     0.0016   18.6   1.4     0.0033   17.6   0.2    1.9  2  Cytochrom_B561  Eukaryotic cytochrome b561
      0.002   18.2   0.5      0.002   18.2   0.5    3.2  3  SdpI            SdpI/YhfL protein family
     0.0044   16.2   1.3       0.59    9.2   0.0    2.2  2  COX15-CtaA      Cytochrome oxidase assembly protein
  ------ inclusion threshold ------
       0.06   13.5   0.9       0.21   11.7   0.9    1.9  1  DUF4079         Protein of unknown function (DUF4079)
        1.5    8.7  10.2          5    7.0   0.5    3.2  4  DUF2427         Domain of unknown function (DUF2427)


Domain annotation for each model (and alignments):
>> Cytochrom_B561  Eukaryotic cytochrome b561
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.1      0.54   1.9e+03       1      22 [.       5      26 ..       5      40 .. 0.67
   2 !   17.6   0.2   9.3e-07    0.0033      35     129 ..      56     149 ..      49     153 .. 0.88

  Alignments for each domain:
  == domain 1  score: -1.1 bits;  conditional E-value: 0.54
                    HHHHHHHHHHTHHHHHHHTHHH CS
  Cytochrom_B561  1 lHpvlmviGfvllmgeaiLvyr 22
                    +H +lm+i+  l+   +++v r
      KOO25350.1  5 VHGILMLIAWGLFAPLGLVVAR 26
                    5888888887777666665554 PP

  == domain 2  score: 17.6 bits;  conditional E-value: 9.3e-07
                     HHHHHHHHHHHHHHHHHHHHHHHHHHHHHT--SS-SHHHHHHHHHHHHHHHHHHHHHHHHTSS---HHHHHHHHHH...HHHHHHHHHHHHHHHH CS
  Cytochrom_B561  35 kllHlilqllalilavvgllavfksknekeianlyslHswlGlvtvilfllqlvlGfvlfllpklskklralllpl...HvllGlvifvlaivta 126
                      ++H ++   a+++++v+ ++++++ +    +++  +H  +G++   ++l+q v + +    pk+ ++ +++ + +   H++lG +   l+ +++
      KOO25350.1  56 FVVHRACMYSAVVITLVASIIALSTVE----EHVDEVHTKIGVILTSVLLIQPVNAYFRPHKPKAGEAPSSARVAWewgHRWLGRALVGLSFASL 146
                     578999999999999999999888888....69*****************************99988888777776679*************999 PP

                     HHH CS
  Cytochrom_B561 127 llG 129
                     ++G
      KOO25350.1 147 ISG 149
                     988 PP

>> SdpI  SdpI/YhfL protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.2   0.2      0.32   1.2e+03      36      45 ..       6      17 ..       3      28 .. 0.58
   2 !    5.5   0.5    0.0051        18      21      53 ..      54      97 ..      52     105 .. 0.64
   3 !   18.2   0.5   5.5e-07     0.002      21      64 ..     126     177 ..     122     180 .. 0.84

  Alignments for each domain:
  == domain 1  score: -0.2 bits;  conditional E-value: 0.32
        SdpI 36 aGlilllla..l 45
                 G+++l+++  +
  KOO25350.1  6 HGILMLIAWglF 17
                678888877431 PP

  == domain 2  score: 5.5 bits;  conditional E-value: 0.0051
        SdpI 21 tWrkahrfagklwiiaGlilllla...........lgavvlvll 53
                 W   hr + +  +++ l+  ++a            ++++++l 
  KOO25350.1 54 MWFVVHRACMYSAVVITLVASIIAlstveehvdevHTKIGVILT 97
                69999**9999887777777777778889997664222222222 PP

  == domain 3  score: 18.2 bits;  conditional E-value: 5.5e-07
        SdpI  21 tWrkahrfagklwiiaGlilllla........lgavvlvllvlvlllvivpi 64 
                 +W+++hr+ g+ ++ ++++ l+ +         +++  v+++lv+++++v +
  KOO25350.1 126 AWEWGHRWLGRALVGLSFASLISGgeladadyDEGYYNVSVALVVIWCAVVF 177
                 7*******************************55556777777777777765 PP

>> COX15-CtaA  Cytochrome oxidase assembly protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.2   0.2    0.0013       4.8     244     292 ..      52     103 ..      21     106 .. 0.72
   2 !    9.2   0.0   0.00016      0.59      75      97 ..     124     146 ..     114     179 .. 0.74

  Alignments for each domain:
  == domain 1  score: 6.2 bits;  conditional E-value: 0.0013
  COX15-CtaA 244 patvqfaHRllAilvllvllllailllrkars...pklarlavllaallllQ 292
                 pa+  ++HR   +  +++ l++ i++l++ ++   + +++++v+l+ +ll+Q
  KOO25350.1  52 PAMWFVVHRACMYSAVVITLVASIIALSTVEEhvdEVHTKIGVILTSVLLIQ 103
                 3444899**8766666665555555555544456699999999999999999 PP

  == domain 2  score: 9.2 bits;  conditional E-value: 0.00016
  COX15-CtaA  75 iawiEwiHRllgrllGllilvpl 97 
                    +Ew HR lgr+l  l ++ l
  KOO25350.1 124 RVAWEWGHRWLGRALVGLSFASL 146
                 568**********8755555544 PP

>> DUF4079  Protein of unknown function (DUF4079)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.9   5.9e-05      0.21      35     101 ..      53     148 ..       5     157 .. 0.61

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 5.9e-05
     DUF4079  35 k.....................aerkekipkkvrdeHvklgslllllvvlgaigglvllylrrgk............lfpssHlyaGlavvvLlalsaa 100
                 +                         + +++ v + H k+g +l+++++    + +v+ y+r +k             +++ H + G a+v+L   s++
  KOO25350.1  53 AmwfvvhracmysavvitlvasIIALSTVEEHVDEVHTKIGVILTSVLL----IQPVNAYFRPHKpkageapssarvAWEWGHRWLGRALVGLSFASLI 147
                 0444444444444444433333233566677788888888877766554....5566777666666666677777779***************998886 PP

     DUF4079 101 l 101
                 +
  KOO25350.1 148 S 148
                 5 PP

>> DUF2427  Domain of unknown function (DUF2427)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.0   0.5    0.0014         5      20      40 ..       5      25 ..       2      41 .. 0.87
   2 ?    1.6   0.4     0.067   2.4e+02       8      38 ..      46      76 ..      39      85 .. 0.74
   3 ?    4.8   2.2    0.0064        23      58      99 ..      67     107 ..      53     111 .. 0.64
   4 ?   -1.6   0.0      0.66   2.4e+03      85      94 ..     165     174 ..     137     183 .. 0.56

  Alignments for each domain:
  == domain 1  score: 7.0 bits;  conditional E-value: 0.0014
     DUF2427 20 vHiilmtlalvvvyPvalvLs 40
                vH ilm++a+++  P++lv +
  KOO25350.1  5 VHGILMLIAWGLFAPLGLVVA 25
                899***************986 PP

  == domain 2  score: 1.6 bits;  conditional E-value: 0.067
     DUF2427  8 fttdephksalwvHiilmtlalvvvyPvalv 38
                +t ++p   +++vH ++m  a+v+ + ++++
  KOO25350.1 46 VTDPAPPAMWFVVHRACMYSAVVITLVASII 76
                5666677778889999999999988766654 PP

  == domain 3  score: 4.8 bits;  conditional E-value: 0.0064
     DUF2427  58 avlglllghiykgstPelypnniyaklswillillavqvvla 99 
                 +v+ l++ +i  ++  e     +++k+++il+ +l++q v a
  KOO25350.1  67 VVITLVASIIALSTVEEH-VDEVHTKIGVILTSVLLIQPVNA 107
                 344444444434444333.5789**************98876 PP

  == domain 4  score: -1.6 bits;  conditional E-value: 0.66
     DUF2427  85 swillillav 94 
                 s+ l+++ ++
  KOO25350.1 165 SVALVVIWCA 174
                 2222222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (208 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       820  (0.045736); expected 358.6 (0.02)
Passed bias filter:                      512  (0.0285571); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.43u 0.24s 00:00:00.67 Elapsed: 00:00:00.39
# Mc/sec: 1582.37
//
Query:       KOO25351.1  [L=1026]
Description: tripeptidyl-peptidase 2, partial [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    3.7e-78  262.8   0.2    5.3e-78  262.3   0.2    1.2  1  Peptidase_S8  Subtilase family
    1.5e-39  135.5   0.0    6.1e-39  133.5   0.0    1.8  2  TPPII         Tripeptidyl peptidase II


Domain annotation for each model (and alignments):
>> Peptidase_S8  Subtilase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  262.3   0.2   5.9e-82   5.3e-78       1     284 [.      30     482 ..      30     498 .. 0.94

  Alignments for each domain:
  == domain 1  score: 262.3 bits;  conditional E-value: 5.9e-82
                   -TT-EEEEECS-B-TT-TTTGGGEEE..EEEE---TTSG.......................................................... CS
                   xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx......................................................... RF
  Peptidase_S8   1 gkgvlvavlDtGvdpshpdlsvttdgerklvdvideegag......................................................... 40 
                   g+gvlvav DtGvdp++ +l+v  dg +k+vdvid++gag                                                         
    KOO25351.1  30 GRGVLVAVFDTGVDPGAAGLQVCPDGRPKMVDVIDCTGAGdvdtstaatpaadgtlkglsgrtlkippawpvpkadgstyhlglkhafelyprglag 126
                   89*********************************************************************************************** PP

                   ................................................................................................. CS
                   ................................................................................................. RF
  Peptidase_S8  41 ................................................................................................. 40 
                                                                                                                    
    KOO25351.1 127 rvkterrktldaaqrdavaasqaamltdekkkdkrwsdemksrvsllekleaeyedpgplydvltyvdgtgswhvcvdtseqgdlascvllepfrig 223
                   ****************999999999999999999999999999999999999999999999999999999999999999999999999999999999 PP

                   .....GGEETT-SS-TT-SC-SSS.........HHHHHHHHHH-B..SSSSSB-SSTTSEEEEEE-SSTTSB-HH..HHHHHHHHHHHHCT-SEEEE CS
                   .....xxxxxxxxxxxxxxxxxxxxxxx.....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Peptidase_S8  41 .....fngadsettstnwarddngnsie.....HGthvAGiaaanapeegekngvapgakilsvkvldtsggsmetgteliraieeaaedkvdvinm 127
                        +++ ++ ++ ++  + +n   i+     HGthvAGi++a++p+++e ng+apg++i+++k++dt++gsmetgt+l+ra+  a+e +v++in+
    KOO25351.1 224 hrygtLDPISMLNYTVDVFDGGNRVMITcdagaHGTHVAGIIGAHYPDKPELNGIAPGCQIIGIKIGDTRLGSMETGTALVRALGVAIERGVHIINL 320
                   888888888888888888888887777799999**************************************************************** PP

                   -EESCETTCHHCHHHHHHHHHHHH.CCT-EEEEE--SS-T-HHEEE-TTCEECTTTSTTCEEEEEES...............TTSSB-TT--B-TT. CS
                   xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...............xxxxxxxxxxxxxxx RF
  Peptidase_S8 128 slgestslpktgrsiealainravnkkgvlvviSaGNngktgsslqagspvgtpstsknvitvgayt...............tegkiapfSsrGpss 209
                   s+ge  +l++tgr +e  +++rav+k+gv++v+SaGNng      +a+ ++g+p+ts  +i+vga++                ++ ++++SsrGp++
    KOO25351.1 321 SFGEYANLDNTGRFTE--MCQRAVDKHGVIFVTSAGNNG------PALTTGGAPGTSGCSIAVGAFVssqmgqpqyslrskmAADLQYTWSSRGPTA 409
                   ****************..*********************......*************************************999************ PP

                   ......-EEEE-S-..CCCCCCCCCHHHTTTHHEEEE-SHHHCHHHHHHHHHHHHHHHTT....--HHHHHHHHHCCS-EE CS
                   xxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx....xxxxxxxxxxxxxxxxx RF
  Peptidase_S8 210 dgklkpdivapGgn..ivstwsrqsnnsaglssyqsmsGTSmAsPnaagaaAlllsalpk....ltpetvraallntAqdl 284
                   dg+  ++++apGg+   v+tw+ ++         q+m+GTSmA+Pna+g+++lllsal +    ++p+ +r+a++ tA  +
    KOO25351.1 410 DGAELVSVSAPGGAiaPVPTWTLNN--------RQLMNGTSMAAPNACGGITLLLSALLArgakWSPRRIRMAIEATAVAT 482
                   **************888999**999........89*********************888889****************776 PP

>> TPPII  Tripeptidyl peptidase II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.1      0.12   1.1e+03      77     104 ..     145     172 ..     142     178 .. 0.80
   2 !  133.5   0.0   6.8e-43   6.1e-39       2     153 ..     794     950 ..     793     977 .. 0.86

  Alignments for each domain:
  == domain 1  score: -1.1 bits;  conditional E-value: 0.12
       TPPII  77 fesqlwmifDsnkqllavgDaypkkysv 104
                   sq  m+ D++k+    +D +++++s+
  KOO25351.1 145 AASQAAMLTDEKKKDKRWSDEMKSRVSL 172
                 67999********999999999999853 PP

  == domain 2  score: 133.5 bits;  conditional E-value: 6.8e-43
       TPPII   2 slrseelkpsvsLkslvqvlrPteskikplsgsRD.......vlpdgrqiyelvltYnfklskstevtprlplLsdlLYesefesqlwmifDsnkqlla 93 
                 ++r++  +ps +L++l++ +rP+ +k+ p  ++ +       + pd+ qiy  ++ Y+f+ls+s ev++r+p+L+ +LYes++e+qlw +fD+ k+l+ 
  KOO25351.1 794 PFRRTPAEPSGELTKLKRAVRPHLAKLVPPAAPLEgcpgigdQWPDSVQIYDYLIAYKFSLSESLEVSVRFPSLCCQLYESPYEAQLWAVFDAHKRLVT 892
                 67888899******************6655444333333444********************************************************* PP

       TPPII  94 vgDaypkkysvkLekGeYtlrlqlrheskslLeklkdlpllieqkLkseisldvysshad 153
                 +gD+yp++    L  GeY +rlq+rh + +lL+kl+++p++++  L+ +++l ++ s+++
  KOO25351.1 893 FGDYYPSAQ--RLPAGEYEVRLQVRHSKVELLQKLRHMPMMLHLTLAAPVKLGFHWSRSG 950
                 *********..*****************************************99877654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1026 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       470  (0.0262145); expected 358.6 (0.02)
Passed bias filter:                      398  (0.0221987); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.67u 0.27s 00:00:00.94 Elapsed: 00:00:00.41
# Mc/sec: 7476.12
//
Query:       KOO25352.1  [L=523]
Description: imp dehydrogenase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
   5.9e-133  443.1   1.9   6.9e-133  442.9   1.9    1.0  1  IMPDH         IMP dehydrogenase / GMP reductase domain
    8.6e-17   61.3   0.0    8.6e-09   35.7   0.0    2.7  2  CBS           CBS domain
    1.4e-09   37.8   0.3    8.4e-06   25.4   0.9    2.4  2  NMO           Nitronate monooxygenase
    6.9e-08   31.9   0.7    5.3e-07   29.0   1.1    2.1  2  FMN_dh        FMN-dependent dehydrogenase
    1.8e-05   24.3   0.1     0.0012   18.4   0.0    2.4  2  His_biosynth  Histidine biosynthesis protein
  ------ inclusion threshold ------
      0.014   14.5   0.1      0.038   13.2   0.1    1.8  1  NanE          Putative N-acetylmannosamine-6-phosphate epimer
      0.027   14.5   0.0       0.05   13.6   0.0    1.3  1  YpsA          YspA SLOG family
       0.13   12.3   0.0        0.3   11.1   0.0    1.6  1  B12-binding   B12 binding domain


Domain annotation for each model (and alignments):
>> IMPDH  IMP dehydrogenase / GMP reductase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  442.9   1.9  3.1e-136  6.9e-133       1     345 []      41     512 ..      41     512 .. 0.99

  Alignments for each domain:
  == domain 1  score: 442.9 bits;  conditional E-value: 3.1e-136
                 E--GGGEEEE---B-S-GGGSB--EESSTTEEESSSEEE-SSTTT-SHHHHHHHHHTTSEEEE-SSS-HHHHHHHHHHHHTS................. CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx................. RF
       IMPDH   1 gltfddvllvpaksevlpkevdlktkltkkiklniPlvsaamdtvtesemAialareGgigvihknlsieeqaeevkkvkrs................. 82 
                 g+t++d++++p+++++ +++v+l+++ tk+i+ln+P++s++mdtvte++mAi++a  Gg+g+ih n +ieeq+++v++vkr+                 
  KOO25352.1  41 GYTYQDYIILPGYISFDAANVTLRSQATKTITLNVPFISSPMDTVTEAQMAIHMALYGGLGIIHCNNTIEEQCNHVRRVKRFengfildpftvspqttl 139
                 69************************************************************************************************* PP

                 ................................................................................................... CS
                 ................................................................................................... RF
       IMPDH  83 ................................................................................................... 82 
                                                                                                                    
  KOO25352.1 140 eyldeikfkhgfsgcpvtedgklksklvgivttrdhdfikdrstlvsevmtkevvtatqgctleeantilknskkgklpvvdkdgclvaaisrkdlrkn 238
                 *************************************************************************************************** PP

                 ...TTSXBXTTSXB-EEEEE-SSTTHHHHHHHHHHTT-SEEEEE-STSSSHHHHHHHHHHHHHTTTSEEEEEEE-SHHHHHHHHHTT-SEEEE-SS-ST CS
                 ...xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       IMPDH  83 ...pnaakdekgrllvgaavgvkedalervkalveagvdvlvvdsahghsekvleavkeikkkveeveviaGnvataegakaLieagadavkvGiGpGs 178
                    p a+kd+ +rllvga++ ++ ++++r++alveagvdv+v+ds++g+s++++e+++++k+++++++v++Gnv+  ++ak+Lie g+d++++G+G+Gs
  KOO25352.1 239 rdfPLASKDAGKRLLVGASIHTRPEDKARAAALVEAGVDVIVIDSSQGNSTYQMEMIRHLKSAYPSLQVVGGNVVCVAQAKNLIEWGVDGLRIGMGSGS 337
                 *************************************************************************************************** PP

                 TBHHHHHCSB---HHHHHHHHHHHHCTCT-EEEEES---SHHHHHHHHHTT-SEEEESCCCTTBTTSSSEEEEETTEEEEEEEETTSHHHHHH..-SS- CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxx RF
       IMPDH 179 iCttrvvagvGvpqltAvaevaeaakkagvpviaDGGikysgdivkAlaaGadavmlGsllagteEspgeviliegrkyKeyrGmgslgamkk..gskd 275
                 iCtt++v++vG+pq+t+v++v+++a+++gvp++aDGGi++ g+i+kAla+Ga++vm+GsllagteE+pg++++ +g ++K+yrGmgs++am++  gs+d
  KOO25352.1 338 ICTTQEVMAVGRPQATSVYHVSKYAREHGVPCWADGGISNIGKIAKALACGASCVMMGSLLAGTEEAPGDYFYKDGVRLKHYRGMGSIDAMQSkgGSAD 436
                 *******************************************************************************************55446*** PP

                 TTS-...--SS-SBEEEEEE--B-HHHHHHHHHHHHHHHHHHHT-SSHHHHHH.....H-EEEEE-HHHHHHHS-- CS
                 xxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.....xxxxxxxxxxxxxxxxxx RF
       IMPDH 276 ryfq.kkeklvpeGvegrvpykgsvkevveqlvgglrsgmgylGaktieelke.....kakfvritaaglkeshvH 345
                 ryf+ +++  v++Gv+g+v +kgs+++++ +l++gl+++++++G++++++l e     + +f+ +ta++++e+ vH
  KOO25352.1 437 RYFSeQAAVRVAQGVSGSVVDKGSLSRYLPYLTTGLKHSLQDMGVRSVKDLFEavydgSLRFELRTASAQSEGAVH 512
                 ***934669******************************************998999899***************9 PP

>> CBS  CBS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.8   0.0   4.3e-08   9.6e-05       8      50 ..     129     174 ..     119     174 .. 0.90
   2 !   35.7   0.0   3.8e-12   8.6e-09       1      53 [.     185     237 ..     185     240 .. 0.93

  Alignments for each domain:
  == domain 1  score: 22.8 bits;  conditional E-value: 4.3e-08
                 SCEEEETTSBHHHHHHH.HHHHTSSEEEEEETTTB....EEEEEEHHH CS
         CBS   8 dvvtvppdttleealel.mrekgvsrlPVVdedgk....lvGivtlrD 50 
                 d++tv+p+ttle + e+ + ++g+s+ PV+ edgk    lvGivt rD
  KOO25352.1 129 DPFTVSPQTTLEYLDEIkF-KHGFSGCPVT-EDGKlkskLVGIVTTRD 174
                 788****************.999*******.89955566******998 PP

  == domain 2  score: 35.7 bits;  conditional E-value: 3.8e-12
                 HHHHSBSSCEEEETTSBHHHHHHHHHHHTSSEEEEEETTTBEEEEEEHHHHHH CS
         CBS   1 VgdimtrdvvtvppdttleealelmrekgvsrlPVVdedgklvGivtlrDllr 53 
                 V+++mt++vvt++  +tleea  ++++++ + lPVVd+dg lv  ++++Dl +
  KOO25352.1 185 VSEVMTKEVVTATQGCTLEEANTILKNSKKGKLPVVDKDGCLVAAISRKDLRK 237
                 89***********************755579*********999*******986 PP

>> NMO  Nitronate monooxygenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.6   0.0   0.00024      0.53       3      60 ..      66     122 ..      64     156 .. 0.86
   2 !   25.4   0.9   3.8e-09   8.4e-06     138     235 ..     307     408 ..     243     429 .. 0.78

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 0.00024
         NMO   3 lltellkikppvvqpgmggiskarLaaavsnaGgLGvlasgyltaDrlakeirkvkal 60 
                 + t+ ++ + p + ++m  +++a++a   +  GgLG++     t  +  + +r+vk+ 
  KOO25352.1  66 QATKTITLNVPFISSPMDTVTEAQMAIHMALYGGLGIIH-CNNTIEEQCNHVRRVKRF 122
                 6678899999****************************9.888888888888888875 PP

  == domain 2  score: 25.4 bits;  conditional E-value: 3.8e-09
         NMO 138 vliptissvkearkvearGaDalivqGpeaGGhqG...tpevgdkglfaLvpqvldavd..iPviAaGGiidrrgvaaaLalGAsgvqigtrfLltkes 231
                 v+ + +  v +a+ ++++G D l + G+ +G        ++vg  + +++    + a +  +P  A GGi +   +a aLa GAs v +g+ + +t+e+
  KOO25352.1 307 VVGGNVVCVAQAKNLIEWGVDGLRI-GMGSGSICTtqeVMAVGRPQATSVYHVSKYAREhgVPCWADGGISNIGKIAKALACGASCVMMGSLLAGTEEA 404
                 45566778999**********9965.88888877744455555555555554444454477*************************************9 PP

         NMO 232 dakd 235
                 +   
  KOO25352.1 405 PGDY 408
                 8665 PP

>> FMN_dh  FMN-dependent dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.0   1.1   2.4e-10   5.3e-07     176     301 ..     260     396 ..     219     406 .. 0.72
   2 ?   -0.8   0.0      0.26   5.9e+02     315     342 ..     461     488 ..     453     493 .. 0.85

  Alignments for each domain:
  == domain 1  score: 29.0 bits;  conditional E-value: 2.4e-10
                 STSGSCCTTH.....THHHH....HHCCCHB-TC--HHHHHHHHHHHS.SEEEEEEE-SHHHHHHHHHTTESEEEE--GGG......TSSTT---HHHC CS
      FMN_dh 176 akpewaaeal...kkasaaa....efvgkqldpsltwddikwlreqtk.lplvvKGvltaedakraveaGvdgivvSNHGG......Rqldgapatidv 260
                 ++pe +a+a+   +    a+     + ++q +++ +++ i+ l+++ + l++v   v++++ ak+++e Gvdg+ +    G        +    +    
  KOO25352.1 260 TRPEDKARAAalvE----AGvdviVIDSSQGNSTYQMEMIRHLKSAYPsLQVVGGNVVCVAQAKNLIEWGVDGLRIGMGSGsicttqEVMAVGRPQATS 354
                 33333333332211....112344666778899999999*****9998467766779*******************99999676665445555555666 PP

                 HHHHHHHH..S.S-EEEESS--SHHHHHHHHHTT-SEEEESH CS
      FMN_dh 261 Lpeiveavggr.ievlvDgGirrGsDvlkAlalGAdavllGR 301
                   ++ ++++++ ++ ++DgGi++   ++kAla+GA++v++G 
  KOO25352.1 355 VYHVSKYAREHgVPCWADGGISNIGKIAKALACGASCVMMGS 396
                 677777777645****************************96 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 0.26
                 HHHHHHHHHHHHHHHHHHHT-SBHHHHH CS
      FMN_dh 315 vervleilraelertmallGvksvaeld 342
                 ++r+l  l++ l+++++ +Gv+sv++l 
  KOO25352.1 461 LSRYLPYLTTGLKHSLQDMGVRSVKDLF 488
                 57888999999**************985 PP

>> His_biosynth  Histidine biosynthesis protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.4   0.1     0.021        46      45     101 ..     278     331 ..     260     347 .. 0.72
   2 !   18.4   0.0   5.3e-07    0.0012      58     105 ..     351     398 ..     343     409 .. 0.87

  Alignments for each domain:
  == domain 1  score: 3.4 bits;  conditional E-value: 0.021
                   EEEEEEHHHHCTTHHHHHHHHHHHHHH-SSEEEEESSSSSHHHHHHHHHCT-SEEEE CS
  His_biosynth  45 elhvvDldaakegreanldlveeiaeevfipvqvGGGIrsledveelleagadkvii 101
                    +    +d ++ +++ + ++++ + ++      vGG +  + ++++l+e g+d + i
    KOO25352.1 278 VI---VIDSSQGNSTYQMEMIRHLKSAYPSLQVVGGNVVCVAQAKNLIEWGVDGLRI 331
                   33...3678888888899999999888554444555599999999999999994444 PP

  == domain 2  score: 18.4 bits;  conditional E-value: 5.3e-07
                   HHHHHHHHHHHHHH-SSEEEEESSSSSHHHHHHHHHCT-SEEEESHHH CS
  His_biosynth  58 reanldlveeiaeevfipvqvGGGIrsledveelleagadkviigtaa 105
                   + +    v++ a+e  +p++ +GGI+++ +++++l  ga+ v++g+  
    KOO25352.1 351 QATSVYHVSKYAREHGVPCWADGGISNIGKIAKALACGASCVMMGSLL 398
                   556667899************************************975 PP

>> NanE  Putative N-acetylmannosamine-6-phosphate epimerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.1   1.7e-05     0.038      59     180 ..     270     402 ..     266     410 .. 0.78

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 1.7e-05
                 HHHTTT-SEEEEE--SS--T--HHHHHHHHHHH-...-EEEEE-SSHHHHHHHHHTT-SE....EE-TTTTSSTTS-......SS--HHHHHHHHHTT- CS
        NanE  59 eLaaagadiialDatdrerpvtieelikkikeky...qllmaDistleeglvakklGvdi....vGttlsGytkeeek.....aepDfalvkalseagl 145
                 +L++ag+d+i +D+ + +   ++e +i+++k  y   q++  ++  + ++++  + Gvd     +G+     t+e        a   +++ k   e g+
  KOO25352.1 270 ALVEAGVDVIVIDSSQGNSTYQME-MIRHLKSAYpslQVVGGNVVCVAQAKNLIEWGVDGlrigMGSGSICTTQEVMAvgrpqATSVYHVSKYAREHGV 367
                 699***********9999887775.78999*9999888889999999999999999999522122333333333332243333666677777788999* PP

                 -EEEES---SHHHHHHHHTT--SEEEE-HHHH-HH CS
        NanE 146 kviaeGrintPekakkaieiGvdavvvGsaitrle 180
                    a+G i    k +ka+ +G+ +v++Gs ++  e
  KOO25352.1 368 PCWADGGISNIGKIAKALACGASCVMMGSLLAGTE 402
                 *****************************887655 PP

>> YpsA  YspA SLOG family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.0   2.2e-05      0.05      32      71 ..     268     307 ..     264     309 .. 0.92

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 2.2e-05
                 HHHHHTTT--EEEE---TTHHHHHHHHHHTTTTT-TT-EE CS
        YpsA  32 lkelleeglewviisgqlGvelwaaevvleLkeeypelkl 71 
                   +l+e g++ ++i  ++G  ++ +e++ +Lk+ yp+l++
  KOO25352.1 268 AAALVEAGVDVIVIDSSQGNSTYQMEMIRHLKSAYPSLQV 307
                 56899*******************************9997 PP

>> B12-binding  B12 binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   0.00014       0.3      41     108 ..     265     329 ..     246     339 .. 0.76

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00014
  B12-binding  41 edivaairaekpdvvglSalltsqleavkelvellkrirprvkvvvGGahpsldpeetleaklgiddv 108
                  ++ +aa+ +  +dv+++ + ++ + +   e+++ lk++ p + vv G ++  + ++ ++e   g+d  
   KOO25352.1 265 KARAAALVEAGVDVIVIDS-SQGNSTYQMEMIRHLKSAYPSLQVVGGNVVCVAQAKNLIE--WGVDGL 329
                  55567888889********.9*******************98888777776666666665..566655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (523 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       587  (0.0327403); expected 358.6 (0.02)
Passed bias filter:                      526  (0.0293379); expected 358.6 (0.02)
Passed Vit filter:                        50  (0.00278878); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.54u 0.30s 00:00:00.84 Elapsed: 00:00:00.43
# Mc/sec: 3685.53
//
Query:       KOO25353.1  [L=450]
Description: RNA pseudouridylate synthase domain-containing protein 1 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    8.4e-26   91.0   0.0    1.2e-25   90.5   0.0    1.2  1  PseudoU_synth_2  RNA pseudouridylate synthase


Domain annotation for each model (and alignments):
>> PseudoU_synth_2  RNA pseudouridylate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   90.5   0.0   6.5e-30   1.2e-25       2     160 .]      81     244 ..      80     244 .. 0.92

  Alignments for each domain:
  == domain 1  score: 90.5 bits;  conditional E-value: 6.5e-30
  PseudoU_synth_2   2 lvvvnKPagvpvqpeak....dgsekekettatssrae.eekkelklvhRLDkatsGllllAksseaanklakafeerkvrKkYlalvfgapee 90 
                      +v+v KP++++++ ++      g+ +++++ a++ ++  +e  e +l+h+LD atsG+l+ Aks  aa+ ++++f++r  rK+Y+alvfg+p+ 
       KOO25353.1  81 VVCVSKPYDMQMSLDKAgprwPGEISVRDWLAAEHPETlTEDGEARLCHNLDFATSGVLIAAKSHVAAADVSRCFRDRLARKVYCALVFGHPSW 174
                      799******************6666666666666666549999*************************************************** PP

  PseudoU_synth_2  91 eegaikkkiskdtekqegarrkaeeldgkkavtylkvlksgs....seksakvslveleletGrkhQiRvhlaa 160
                      e+ + +  i +    + ++++++   +gk a+t + v ++g+    + ++  +sl+ l+++tGr+hQ+R h+++
       KOO25353.1 175 EATQWDDRIME----NGRRFKQRISGGGKAAQTDVVVGARGVlrvgQHAGREASLLWLFPHTGRRHQLRLHCSH 244
                      **999999999....8999999999999********************************************86 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (450 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       248  (0.0138323); expected 358.6 (0.02)
Passed bias filter:                      200  (0.0111551); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.23s 00:00:00.69 Elapsed: 00:00:00.39
# Mc/sec: 3457.88
//
Query:       KOO25354.1  [L=259]
Description: hypothetical protein Ctob_006936 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
  ------ inclusion threshold ------
       0.13   13.1   3.1       0.32   11.8   3.2    1.6  2  Senescence_reg  Senescence regulator


Domain annotation for each model (and alignments):
>> Senescence_reg  Senescence regulator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   3.2   1.8e-05      0.32      48     126 ..      39     132 ..       2     138 .. 0.53
   2 ?   -2.5   0.0      0.43   7.8e+03      88      99 ..     202     213 ..     192     240 .. 0.77

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 1.8e-05
  Senescence_reg  48 s...............sssssssaaraipaapkrkaeassaakkksksakkaqSaPvnvPdWskilkkesskesrk.eeeeeede.ddeaemvPP 125
                                     ++++ +s  + i     r++   ++  ++ +++  ++ aPv+ P++s +l ++ s ++ + +e +++de d+ +   PP
      KOO25354.1  39 VgvvrsslfdaddwkrEHQARESRMESIFGRLYRPQA--NSYWTQPQKPPMRKPAPVQLPNYSTSLPAALSLAHPSsREIDSDDEdDEPEPNSPP 131
                     0333333344433322333333344444433334433..3333333445559************99887765554425555555524456779** PP

  Senescence_reg 126 H 126
                     H
      KOO25354.1 132 H 132
                     * PP

  == domain 2  score: -2.5 bits;  conditional E-value: 0.43
  Senescence_reg  88 PvnvPdWskilk 99 
                      v++P W +  +
      KOO25354.1 202 GVQIPMWDELDG 213
                     689999987655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (259 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       485  (0.0270511); expected 358.6 (0.02)
Passed bias filter:                      360  (0.0200792); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.23s 00:00:00.66 Elapsed: 00:00:00.40
# Mc/sec: 1957.54
//
Query:       KOO25355.1  [L=986]
Description: filamin like protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.8e-23   82.3   0.0    2.9e-06   28.0   0.0    5.7  5  Filamin     Filamin/ABP280 repeat
    2.8e-12   46.8   0.0    6.2e-12   45.7   0.0    1.6  1  C2          C2 domain
    7.9e-07   29.3   0.1      0.012   15.9   0.0    4.5  4  Invasin_D3  Invasin, domain 3
     0.0017   18.3   0.1          1    9.4   0.0    3.5  3  Big_1       Bacterial Ig-like domain (group 1)
  ------ inclusion threshold ------
      0.019   14.9   0.0        5.7    7.0   0.0    3.1  3  Y_Y_Y       Y_Y_Y domain


Domain annotation for each model (and alignments):
>> Filamin  Filamin/ABP280 repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.9   0.0   0.00017      0.61      73     102 ..     324     355 ..     297     356 .. 0.93
   2 !   28.0   0.0   8.1e-10   2.9e-06      18     102 ..     381     476 ..     365     477 .. 0.80
   3 !    7.4   0.0    0.0021       7.5       7      92 ..     490     617 ..     484     633 .. 0.58
   4 !    8.6   0.0    0.0009       3.2      80     102 ..     739     761 ..     637     762 .. 0.74
   5 !   19.7   0.0   3.2e-07    0.0012       7      96 ..     775     855 ..     767     863 .. 0.78

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00017
                 EEEEEE--SSSCEEEEEEEETTCE-..TTSSE CS
     Filamin  73 tytvsYtpeepgtyrvsvkldgkhi..ggsPf 102
                 t++vsY + ++g+y ++v l+++++  +gsPf
  KOO25355.1 324 THQVSYSVGAAGKYLMHVGLRQQSVvlPGSPF 355
                 899*****************999765589999 PP

  == domain 2  score: 28.0 bits;  conditional E-value: 8.1e-10
                 ETTS-EEEEEEESSSTSCCCSTTS..EEEEE..ESSTS...................EEEEEEEE-SSSEEEEEE--SSSCEEEEEEEETTCE-TTSSE CS
     Filamin  18 vagesltFtvytkdakgeksevggdelqvrivtgsphgaatk...s...........svkievvdnedgtytvsYtpeepgtyrvsvkldgkhiggsPf 102
                 v+g +    +++ d+ g+++  gg +l+v+i  ++++ a ++   s            ++++++d++dgt+ vs+t + + +y ++++++  h  gsP 
  KOO25355.1 381 VVGTEGRLVIQMCDCMGNRCVDGGAPLEVTI--QGQQAA-KQadtSgqsaggdatnaPLTCKCIDQQDGTFIVSWTGKVSKNYMLELRMNHAHLVGSPV 476
                 788899999*********999999*******..555333.2223314455566667799***************************************5 PP

  == domain 3  score: 7.4 bits;  conditional E-value: 0.0021
                 EEEESGGGTEEETTS-EEEEEEESSSTSCCCSTTS..EE.....EEE...................ESSTS............................ CS
     Filamin   7 skvnGpGieasvagesltFtvytkdakgeksevggdelq.....vriv.................tgsphgaatk.....................s.. 60 
                 + ++ p   +++ag   +++v ++da+g+++  + d  +     +  v                                                +  
  KOO25355.1 490 CELLAPR--EAIAGIASQISVTCRDAYGNEVSPQTDGSGappfgL--VllplankekiqsgpskdN--------GasslkkeekggadekrrasllKke 576
                 5554444..5599999*************9998885555555332..2335555555544433330........1333344444444444444444044 PP

                 ..........EEEEEEEE-SSSEEEEEE--SSSCEEEEEEEE CS
     Filamin  61 ..........svkievvdnedgtytvsYtpeepgtyrvsvkl 92 
                           s++ + +       ++s+ p+e+g+++++v +
  KOO25355.1 577 eranlvktleSIPFQTSWD-KSNVQMSFIPKEAGDFELHVWC 617
                 4555555554333332222.3458899999999999999877 PP

  == domain 4  score: 8.6 bits;  conditional E-value: 0.0009
                 -SSSCEEEEEEEETTCE-TTSSE CS
     Filamin  80 peepgtyrvsvkldgkhiggsPf 102
                 ++ +g ++vs++l+g ++ gsP 
  KOO25355.1 739 LTVKGSHKVSIELNGTSVTGSPI 761
                 5678******************7 PP

  == domain 5  score: 19.7 bits;  conditional E-value: 3.2e-07
                 EEEESGGGTEE.ETTS-EEEEEEESSSTSCCCSTTS..EEEEE..ESSTS.....EEEEEEEE-SSSEEEEEE--SSSCEEEEEEEETTCE CS
     Filamin   7 skvnGpGieas.vagesltFtvytkdakgeksevggdelqvrivtgsphgaatkssvkievvdnedgtytvsYtpeepgtyrvsvkldgkh 96 
                 s++  +  ++   +  ++ +   + d++g+++e gg +++ ++   +++ +      +++vvd+ +g  t+++t++ pg+y+ + +l + +
  KOO25355.1 775 SYM--EAKNSRlEVDSPIDIVLRLLDKHGNQCERGGVRVDAKV--FGSKAS------EAKVVDHANGIITITFTASLPGDYKCQCRLENAD 855
                 333..33323357788889999999*********999999999..555443......467**********************999998865 PP

>> C2  C2 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.7   0.0   1.7e-15   6.2e-12       1      92 [.       9     104 ..       9     114 .. 0.85

  Alignments for each domain:
  == domain 1  score: 45.7 bits;  conditional E-value: 1.7e-15
                 TEEEEEEEEEESSSSSSTTSSCEEEEEEEEECEEEEEE-SCSSSSSSEEEEEEEEEESC..HTTSEEEEEEEEECS...SSTEEEEEEEEEEGHHHH CS
          C2   1 gklevtvieAknLpnkdkkgssdpyvkvsldgkqkakTrviknslnPvWnekftfevae..leeakLeveVfdndr...lskddfiGkveiplstll 92 
                 gkl++   +A +L++ d +g+sdpyv+ ++  ++k+ ++v+ ++l+PvWne++++e a        L ++Vfd d+    +kdd++ + +++l+ l 
  KOO25355.1   9 GKLRICLAKAAGLAAADLNGKSDPYVSFTC-AEHKVVSTVKAKTLSPVWNETYEMEDALqkFVVNGLMIKVFDCDNpqkPEKDDMLAQKQVSLEGLR 104
                 6899**************************.777777777***************66655578899*******98877669999***9999998844 PP

>> Invasin_D3  Invasin, domain 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.8   0.0      0.02        71      24      81 ..     409     467 ..     400     482 .. 0.65
   2 ?    1.9   0.0     0.076   2.7e+02      21      39 ..     503     521 ..     494     526 .. 0.86
   3 ?    0.9   0.1      0.16   5.6e+02      52      85 ..     721     756 ..     665     765 .. 0.71
   4 !   15.9   0.0   3.4e-06     0.012       2      82 ..     772     853 ..     771     858 .. 0.76

  Alignments for each domain:
  == domain 1  score: 3.8 bits;  conditional E-value: 0.02
  Invasin_D3  24 ltvtlkDangnp.vsgltvtfsttsag.tlsavtdngdGtytatLtattagtatitptvn 81 
                 +t++ + a+ ++ +sg++    +t+a  t  +  d++dGt ++  t++ ++++ ++  +n
  KOO25355.1 409 VTIQGQQAAKQAdTSGQSAGGDATNAPlTC-KCIDQQDGTFIVSWTGKVSKNYMLELRMN 467
                 555555555555555555444444222332.344*************9999998887766 PP

  == domain 2  score: 1.9 bits;  conditional E-value: 0.076
  Invasin_D3  21 tstltvtlkDangnpvsgl 39 
                 +s+++vt +Da gn vs +
  KOO25355.1 503 ASQISVTCRDAYGNEVSPQ 521
                 5789**********98866 PP

  == domain 3  score: 0.9 bits;  conditional E-value: 0.16
  Invasin_D3  52 savtdngdGtytatLta..ttagtatitptvnGvai 85 
                  av +++ G y+    +  t +g+ +++ ++nG++ 
  KOO25355.1 721 VAVANSAIGLYEIMSPSelTVKGSHKVSIELNGTSV 756
                 245555568888888887677999999999999443 PP

  == domain 4  score: 15.9 bits;  conditional E-value: 3.4e-06
  Invasin_D3   2 pakStftaspasivAdGkststltvtlkDangnpvsgltvtfstt...sagtlsavtdngdGtytatLtattagtatitptvnG 82 
                  +kS ++a+++ +  d  s   + + l D++gn      v + ++   s+ +  +v d+++G+ t t+ta+  g ++ +  +++
  KOO25355.1 772 VSKSYMEAKNSRLEVD--SPIDIVLRLLDKHGNQCERGGVRVDAKvfgSKASEAKVVDHANGIITITFTASLPGDYKCQCRLEN 853
                 6789999999999888..77788999********54444555544234344556799**************9999987776665 PP

>> Big_1  Bacterial Ig-like domain (group 1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.9   0.0     0.015        53       7      22 ..     504     519 ..     502     522 .. 0.86
   2 ?   -0.6   0.1      0.39   1.4e+03      17      34 ..     752     769 ..     751     776 .. 0.83
   3 !    9.4   0.0   0.00028         1      11      61 ..     794     846 ..     788     848 .. 0.76

  Alignments for each domain:
  == domain 1  score: 3.9 bits;  conditional E-value: 0.015
       Big_1   7 ntltatvkDangnpva 22 
                 +++++t +Da+gn v+
  KOO25355.1 504 SQISVTCRDAYGNEVS 519
                 6899*********998 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 0.39
       Big_1  17 ngnpvagatVtfsvsgga 34 
                 ng+ v g +++f+v  g+
  KOO25355.1 752 NGTSVTGSPIKFNVAPGQ 769
                 899**********98865 PP

  == domain 3  score: 9.4 bits;  conditional E-value: 0.00028
       Big_1  11 atvkDangnpva..gatVtfsvsggalsassgtTdanGkatvtltstkagtvt 61 
                  ++ D++gn  +  g+ V  +v g+++s+++++  anG++t+t+t + +g+++
  KOO25355.1 794 LRLLDKHGNQCErgGVRVDAKVFGSKASEAKVVDHANGIITITFTASLPGDYK 846
                 6677777777762255566666667777*******************999986 PP

>> Y_Y_Y  Y_Y_Y domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.0       2.4   8.5e+03      30      45 ..     326     341 ..     321     341 .. 0.81
   2 ?    7.0   0.0    0.0016       5.7      14      47 ..     585     617 ..     575     624 .. 0.77
   3 ?    4.0   0.0     0.013        47      29      49 ..     832     853 ..     821     856 .. 0.79

  Alignments for each domain:
  == domain 1  score: -3.2 bits;  conditional E-value: 2.4
                 EEEEES--SEEEEEEE CS
       Y_Y_Y  30 easytnlppGdYtlkV 45 
                 ++sy+   +G+Y  +V
  KOO25355.1 326 QVSYSVGAAGKYLMHV 341
                 89999999****8776 PP

  == domain 2  score: 7.0 bits;  conditional E-value: 0.0016
                 EETTESSEEEESSTS.EEEEES--SEEEEEEEEE CS
       Y_Y_Y  14 legidkeWveasdysqeasytnlppGdYtlkVka 47 
                 le i  + + ++++  + s++++++Gd++l+V +
  KOO25355.1 585 LESIPFQTSWDKSNV-QMSFIPKEAGDFELHVWC 617
                 555556666666677.9***************98 PP

  == domain 3  score: 4.0 bits;  conditional E-value: 0.013
                 ..EEEEES--SEEEEEEEEEEE CS
       Y_Y_Y  29 q.easytnlppGdYtlkVkakd 49 
                   ++++t   pGdY+ +++  +
  KOO25355.1 832 IiTITFTASLPGDYKCQCRLEN 853
                 3489***********9998655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (986 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       512  (0.0285571); expected 358.6 (0.02)
Passed bias filter:                      386  (0.0215294); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.69u 0.27s 00:00:00.96 Elapsed: 00:00:00.44
# Mc/sec: 6753.73
//
Query:       KOO25356.1  [L=633]
Description: heat shock protein 70 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
   8.5e-233  773.9   0.4   9.7e-233  773.7   0.4    1.0  1  HSP70        Hsp70 protein
    7.4e-16   57.9   0.7    3.5e-15   55.6   0.1    2.0  2  MreB_Mbl     MreB/Mbl protein
     0.0002   21.7   0.4       0.62   10.5   0.1    3.6  3  FtsA         Cell division protein FtsA
  ------ inclusion threshold ------
       0.15   11.0   0.3        6.5    5.7   0.1    2.2  2  HMG-CoA_red  Hydroxymethylglutaryl-coenzyme A reductase


Domain annotation for each model (and alignments):
>> HSP70  Hsp70 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  773.7   0.4  2.2e-236  9.7e-233       1     589 [.       4     600 ..       4     610 .. 0.97

  Alignments for each domain:
  == domain 1  score: 773.7 bits;  conditional E-value: 2.2e-236
                 EEEEEEXSSEEEEEEEETTEEEEEXXTTSXSSEESEEEEXTTSEEETHHHHHCTTTTGGGEEEXGGGTTTXBTTSHHHHHHHTTXSSEEEEETTSBEEE CS
       HSP70   1 viGiDLGttnsvvavmeggkievianeegnrttPsvvaFtkkerlvGeaAkrqavtnpkntvfsvKrliGrkfsdpevqkeikelpykvvkkengkavv 99 
                 v+G+DLGtt+s+va++++g +e+ian++gnr+tPs+vaFt+ erlvG+aAk+qa+ np+nt++++KrliGr+f+dp vqk++k +p+kvv ++ gk+ +
  KOO25356.1   4 VVGVDLGTTYSCVAIFQNGAVEIIANDQGNRVTPSYVAFTDSERLVGDAAKTQAALNPANTIYDTKRLIGRQFTDPLVQKDMKLWPFKVVPDSSGKPLI 102
                 79************************************************************************************************* PP

                 EEEETTE..EEEHHHHHHHHHHHHHHHHHHHHTSBEEEEEEEEXTTXXHHHHHHHHHHHHHTTXEEEEEEEHHHHHHHHHHTCCSSSCEEEEEEEEXSS CS
       HSP70 100 eveaage..kftpeqisamvLkklketaeaylgkkvtdavitvPaYfndaqRqatkdAgkiAGLnvlRivNepTAaalaYGldkkdkernvlvyDlGgg 196
                 +v++ g   ++tp+++s+mvL k+++taeaylgk+v++ v+tvPaYfndaqRqatkdAg+iAGLnvlRi+NepTAaa+a+Gld+++  ++vlv+DlGgg
  KOO25356.1 103 QVTVDGAkkSLTPQEVSSMVLGKMRDTAEAYLGKEVKNMVVTVPAYFNDAQRQATKDAGAIAGLNVLRILNEPTAAAIAFGLDRSHAAETVLVFDLGGG 201
                 ***9987779***************************************************************************************** PP

                 XEEEEEEEEETTEEEEEEEEEETTXSHHHHHHHHHHHHHHHHHHHH.SXXGGGSHHHHHHHHHHHHHHHHHTTTSSCSEEEEEEEEEETTTEEEEEEEE CS
       HSP70 197 tfdvSilelekGvfevkaTagDthlGGedfDealvehlveefkkke.gidlskdkkalqrlkeaaekaKkeLSsskqteinleietvdedgkdlsekls 294
                 tfdvS+l++++Gvfev+aTagDthlGGed D++l++hl+  +kkk+ g d ++++ a+q+l+++ae+aK++LS+  +te+++eie +   g+dlse ++
  KOO25356.1 202 TFDVSLLSIDSGVFEVLATAGDTHLGGEDLDARLIQHLIGIVKKKYpGKDPTTSPAAVQKLRREAERAKRALST--KTEVRVEIEGLLP-GVDLSEMVT 297
                 ********************************************97589*************************..9************.********* PP

                 HHHHHHHHHHHHHHTHHHHHHHHHHCTEEGGGCSEEEEESGGGGSHHHHHHHHHHTT.CHHBSSSHTTTHHHHHHHHHHHHHCTC..GCSHCCEEEEBE CS
       HSP70 295 RakfeelvedllertlepvekalkdaklkkeeidevvlvGGstRiPkvqelvkelfg.kepsktvnpDeavaiGAAvqagvlsge..eevkdllllDvt 390
                 Rakfeel++dl+++tl pvek+l+da ++k++++evvlvGGstRiPkv++++k +f+ kep++++npDeava GAAvqagvlsge  ++++dllllDv 
  KOO25356.1 298 RAKFEELCADLFRQTLLPVEKVLEDAAISKSDVSEVVLVGGSTRIPKVRSMLKRFFNgKEPNTSINPDEAVAFGAAVQAGVLSGErdKKIQDLLLLDVA 396
                 ********************************************************99**************************977899********* PP

                 SS-EEEEETTTEEEEEESTTCBSSEEEEEEEEESSTTSSSEEEEEEESSSSBGGGSEEEEEEEEECESSCSTTCSEEEEEEEEETTSCEEEEEEETTTC CS
       HSP70 391 pLslgietlggvmtkliernttiptkksqvfstaadnqtaveievlqgerelvkdnkllgsfeldgippaprGvpqieVtfdidanGiltvsakdketg 489
                 pL+lgiet+ggvm  +i+rnt+ipt+k++ ++ta+d+q av+ +v++ger l +dn+llg+fel+g p++prG+ qi+Vtfd+danGil+vsa++ ++g
  KOO25356.1 397 PLTLGIETTGGVMAAIIPRNTVIPTSKTKRYTTAEDGQVAVTNKVFEGERPLSQDNRLLGTFELSGFPAMPRGEAQIDVTFDLDANGILSVSAREVTSG 495
                 *************************************************************************************************** PP

                 CEEEEEEECCSSSBHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH..GGGSTHHHH....HHHHHHHHHHHCHTTSSCHHHHHHH CS
       HSP70 490 keeeitieaseglseeeiekmvkdaeesaeedkkkkeaieakneaeelvyslekkleee..aekvseaek....ekvesaieeLkeeleeeekeeieak 582
                  e++iti+++++ls e++e+mv++a +++++d+++  ++ea+ ++e++v+  +k l++   ++ + e++     +++++  ++L++++ +++++e+ ++
  KOO25356.1 496 TEAKITIQNADRLSPEDVERMVNEAASYKDADAQALGRVEARVRLEQYVHACRKLLKDVelRNRMLEEDVlsatSDLDTVDAWLDDSG-DHSAAEYDER 593
                 *********************************************************9988666666666688899999*******97.7778999999 PP

                 HHHHHHH CS
       HSP70 583 teelkkv 589
                 + el+  
  KOO25356.1 594 LAELRDN 600
                 9999764 PP

>> MreB_Mbl  MreB/Mbl protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.0   0.0     0.067     3e+02       4      23 ..       5      24 ..       3      60 .. 0.74
   2 !   55.6   0.1   7.9e-19   3.5e-15      92     316 ..     137     373 ..     113     380 .. 0.80

  Alignments for each domain:
  == domain 1  score: 0.0 bits;  conditional E-value: 0.067
                EEEEE-SSEEEEEETTTEEE CS
    MreB_Mbl  4 lgiDLGtantlvyvkgkgiv 23
                +g+DLGt+   v + ++g v
  KOO25356.1  5 VGVDLGTTYSCVAIFQNGAV 24
                79******999877666654 PP

  == domain 2  score: 55.6 bits;  conditional E-value: 7.9e-19
                 S--EEEEEE-SS--HHHHHHHHHHHHHTT-SEEEEEEHHHHHHHHTT--TTS.SS-EEEEEE-SS-EEEEEEETTEEE.....EEEEES-SHHHHHHHH CS
    MreB_Mbl  92 skprvvicvPsgiteverrAvkeaakkaGarevllieeplaAAiGaglpvee.psgnmvvdiGggttevavislggiv.....tsksvrvaGdeldeai 184
                 + +++v++vP   ++ +r+A k+a   aG +   +++ep aAAi  gl+ ++ ++  +v d+Gggt +v+++s+ + v     t+   +++G++ld  +
  KOO25356.1 137 EVKNMVVTVPAYFNDAQRQATKDAGAIAGLNVLRILNEPTAAAIAFGLDRSHaAETVLVFDLGGGTFDVSLLSIDSGVfevlaTAGDTHLGGEDLDARL 235
                 55789*******************************************986515677899*************98755222225667899******998 PP

                 HHH....HHHHHSEE...--HHHHHHHHHHH-BSS--HHHH.EEEEEEEETTTTCEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHTS-HHHHHHHHHH CS
    MreB_Mbl 185 iky....irkkynll...iGertaekikieigsavkeeeee.kmeikGrdlvtglpkevevsseevrealkepvsaiveavkevLektppeLaadivdr 275
                 i++    ++kky         + ++k++ e   a+   +++ +++++   l+ g+  +  v+ ++ +e  ++ +++ +  v++vLe+++    +d+ + 
  KOO25356.1 236 IQHligiVKKKYPGKdptTSPAAVQKLRREAERAKRALSTKtEVRVEIEGLLPGVDLSEMVTRAKFEELCADLFRQTLLPVEKVLEDAAIS-KSDVSE- 332
                 88744447****76511145556677777777776655555566666677999999999***************************98765.689976. PP

                 -EEEESGGGGSBTHHHHHHHHHSS-.EEE-SSTTTHHHHHHH CS
    MreB_Mbl 276 givltGGgallkgldkllseetglp.vkvaedpltcvakGtg 316
                  +vl+GG++ +  ++++l++ ++ +  +++ +p ++va G++
  KOO25356.1 333 -VVLVGGSTRIPKVRSMLKRFFNGKePNTSINPDEAVAFGAA 373
                 .99***************998875415677788888888875 PP

>> FtsA  Cell division protein FtsA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.5   0.1   0.00014      0.62       1      34 [.       5      36 ..       5     122 .. 0.83
   2 !    6.0   0.0    0.0034        15       4     101 ..     197     369 ..     194     373 .. 0.59
   3 ?    0.5   0.0      0.19   8.4e+02      24      56 ..     483     521 ..     473     589 .. 0.67

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00014
                EEEEE-SSSEEEEEEETTEEEEEEEES-.-HHHHH CS
                xxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxx RF
        FtsA  1 alvDiGagktdvavaedgalvhlrvigv.ggngit 34
                ++vD+G++ ++va++++g   ++++i   +gn +t
  KOO25356.1  5 VGVDLGTTYSCVAIFQNG---AVEIIANdQGNRVT 36
                69***************9...66666666666666 PP

  == domain 2  score: 6.0 bits;  conditional E-value: 0.0034
                 EE-SSSEEEEEEETTEEEEEEEES-......-HHHHHHH....................HHHHHT--HHHHHHHHHHH--S--EEEEEHHHHH...... CS
                 xxxxxxxxxxxxxxxxxxxxxxxxx......xxxxxxxx....................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...... RF
        FtsA   4 DiGagktdvavaedgalvhlrvigv......ggngitkd....................iakalrtaveeAerikikyGsalaekeigrkels...... 70 
                 D+G+g+ dv++++ ++ v ++v+ +      gg+ ++                         a+++   eAer k     al++k+  r e++      
  KOO25356.1 197 DLGGGTFDVSLLSIDSGV-FEVLATagdthlGGEDLDARliqhligivkkkypgkdpttSPAAVQKLRREAERAK----RALSTKTEVRVEIEgllpgv 290
                 777777777777775432.33333333334444444444555555555555555555542234566677788888....44442222223444555555 PP

                 ...............................................GGGGSTTHHHHHHHHHT-..HH.HT-GGGHHH CS
                 ...............................................xxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxx RF
        FtsA  71 ...............................................ggsalpnleelaeralspklee.vsdpeyasa 101
                                                                g++ +p+++ +++r ++ k+ +   +p  a+a
  KOO25356.1 291 dlsemvtrakfeelcadlfrqtllpvekvledaaisksdvsevvlvgGSTRIPKVRSMLKRFFNGKEPNtSINPDEAVA 369
                 55566666666677777777777777777777777777777999999999*********99995542233555555555 PP

  == domain 3  score: 0.5 bits;  conditional E-value: 0.19
                 EEES--HHHHHHH......HHHHHT--HHHHHHHHHHH- CS
                 xxxxxxxxxxxxx......xxxxxxxxxxxxxxxxxxxx RF
        FtsA  24 rvigvggngitkd......iakalrtaveeAerikikyG 56 
                  ++ v ++ +t++      i++a r + e+ er+  + +
  KOO25356.1 483 GILSVSAREVTSGteakitIQNADRLSPEDVERMVNEAA 521
                 567788899999966666666666777777777763322 PP

>> HMG-CoA_red  Hydroxymethylglutaryl-coenzyme A reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.7   0.1    0.0014       6.5     209     277 ..     124     191 ..      96     199 .. 0.79
   2 ?    3.0   0.0    0.0094        42     303     346 ..     332     382 ..     323     382 .. 0.88

  Alignments for each domain:
  == domain 1  score: 5.7 bits;  conditional E-value: 0.0014
                  HHH..-SSTTHHHHHHHHHHHHHHHHHH-HHHH..HHHHHHH.........HHHHHHHHHHTT--HHHHHH CS
  HMG-CoA_red 209 rgksvvaeatigeevvekilkasaealvdlnranigtankGi.ggfna.haaNgiaAvflAtGqDlaavee 277
                   +++ +aea++g+ev ++++ + +    d++r+  +t  +G+  g n+ + +N  +A ++A G D  + +e
   KOO25356.1 124 GKMRDTAEAYLGKEV-KNMVVTVPAYFNDAQRQ--ATKDAGAiAGLNVlRILNEPTAAAIAFGLDRSHAAE 191
                  344566999999886.677778888899999*9..99999998888853899***********99877666 PP

  == domain 2  score: 3.0 bits;  conditional E-value: 0.0094
                  ---SBSHHHHH-HHHHHH.HHTT---HH.........HHHHHHHHHHHHHH CS
  HMG-CoA_red 303 eVGtvGGgtklppqaell.kllgvkgak......nakeLaeiiaavgLAqe 346
                  eV  vGG+t++p+ +++l ++ + k+++      +a ++   + a +L++e
   KOO25356.1 332 EVVLVGGSTRIPKVRSMLkRFFNGKEPNtsinpdEAVAFGAAVQAGVLSGE 382
                  6889**************999999999988888888888888888888876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (633 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       615  (0.034302); expected 358.6 (0.02)
Passed bias filter:                      531  (0.0296168); expected 358.6 (0.02)
Passed Vit filter:                        50  (0.00278878); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.64u 0.28s 00:00:00.92 Elapsed: 00:00:00.42
# Mc/sec: 4491.95
//
Query:       KOO25357.1  [L=665]
Description: beach domain-containing protein, partial [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.8e-98  328.3   0.0    4.9e-98  327.9   0.0    1.1  1  Beach     Beige/BEACH domain
    2.1e-07   30.9   0.0    1.9e-05   24.7   0.0    3.1  3  PH_BEACH  PH domain associated with Beige/BEACH


Domain annotation for each model (and alignments):
>> Beach  Beige/BEACH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  327.9   0.0  5.5e-102   4.9e-98       1     276 []     331     602 ..     331     602 .. 0.96

  Alignments for each domain:
  == domain 1  score: 327.9 bits;  conditional E-value: 5.5e-102
       Beach   1 ekWqkgeisnfeYLmalNtlagRsfndlsqYpvfPwvlkdyeseeldledektyRdLskpigalneerleklkeryeeleeeepkflygshyssaaivl 99 
                 e+W++g i nf+YL++lN +agRs+ dl qYpvfPwvl+d++s++l+l+ + t+RdL+kp+galne+rl+ ++ery+++ e  ++flyg+hys +a+v 
  KOO25357.1 331 ERWRHGLIDNFTYLLFLNDCAGRSLGDLAQYPVFPWVLADVTSTSLNLNAPATFRDLRKPVGALNEKRLAIFRERYDSM-EPGQRFLYGTHYSAPAFVS 428
                 58****************************************************************************9.68899************** PP

       Beach 100 yylvRlePftelalelqsgkfdvadrlfksieeawesvtesesdvkEliPeffylp..efllnsnnldlglkqe.ekvddVeLPpwakkspeeFvrihr 195
                 y+l+Rl+P  el l+l++g+fd+adr f+si+eaw sv++s+sdvkEliP f+  p  +flln ++ldlg++++ + v+dV LPpwa +++++Fv+++r
  KOO25357.1 429 YFLLRLAP--ELTLHLHGGSFDTADREFTSISEAWYSVLSSSSDVKELIPHFYHPPsaSFLLNGRHLDLGVRSDgTPVGDVLLPPWA-SDATDFVTKCR 524
                 ********..8999999************************************987779************9866************.9********** PP

       Beach 196 eaLeseyvsenLheWIDliFGykqrgeeavkaknvfhpltyegevdlekiedeeekkaieaqikefGqtPkqlfkkphpkr 276
                 +aLese +s++Lh+WIDliFGy qrg +a +a+n+f p tye   d++++   ++++a+e+q++efGqtP qlf +php+r
  KOO25357.1 525 AALESELCSSQLHRWIDLIFGYSQRGIAADEAHNLFCPQTYEA--DYSNLPA-MDRRALESQVAEFGQTPLQLFIEPHPPR 602
                 *****************************************96..4555544.4578**********************97 PP

>> PH_BEACH  PH domain associated with Beige/BEACH
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.3   0.0     0.041   3.6e+02       8      27 ..      50      69 ..      45      82 .. 0.85
   2 ?    0.4   0.0     0.079   7.1e+02       2      23 ..     204     225 ..     203     230 .. 0.90
   3 !   24.7   0.0   2.2e-09   1.9e-05      50      79 ..     236     265 ..     231     268 .. 0.92

  Alignments for each domain:
  == domain 1  score: 1.3 bits;  conditional E-value: 0.041
    PH_BEACH  8 kvvkGklsittkelvFtads 27
                +++ G+l + +k+l+F++d+
  KOO25357.1 50 SALAGRLMVASKSLTFEPDD 69
                6789**************94 PP

  == domain 2  score: 0.4 bits;  conditional E-value: 0.079
    PH_BEACH   2 elvtpmkvvkGklsittkelvF 23 
                 + v+pm +++G l +t+++l+ 
  KOO25357.1 204 QRVRPMLTLPGLLLLTESRLYI 225
                 679***************9986 PP

  == domain 3  score: 24.7 bits;  conditional E-value: 2.2e-09
    PH_BEACH  50 kewklseikevhlrrYlLrktAlEiFladr 79 
                  +w+l+ ++ v +rrYlLr++AlE++++ +
  KOO25357.1 236 THWPLAALERVVCRRYLLRDVALELHFRRG 265
                 58************************9876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (665 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       425  (0.0237046); expected 358.6 (0.02)
Passed bias filter:                      387  (0.0215851); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.59u 0.26s 00:00:00.85 Elapsed: 00:00:00.44
# Mc/sec: 4525.44
//
Query:       KOO25358.1  [L=1112]
Description: hypothetical protein Ctob_011538 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
      2e-08   34.0   7.3      2e-08   34.0   7.3    2.7  2  zf-C3HC4      Zinc finger, C3HC4 type (RING finger)
      3e-08   33.9   7.6      3e-08   33.9   7.6    3.2  2  zf-RING_2     Ring finger domain
    4.8e-06   26.3   4.7    4.8e-06   26.3   4.7    2.7  2  Prok-RING_4   Prokaryotic RING finger family 4
    9.2e-06   25.4   2.9    9.2e-06   25.4   2.9    3.4  4  zf-C3HC4_2    Zinc finger, C3HC4 type (RING finger)
    1.5e-05   24.7   5.7    1.5e-05   24.7   5.7    2.9  2  zf-C3HC4_3    Zinc finger, C3HC4 type (RING finger)
    5.3e-05   23.2   4.5    5.3e-05   23.2   4.5    2.1  1  zf-RING_UBOX  RING-type zinc-finger
    0.00011   22.4   4.1    0.00011   22.4   4.1    2.7  2  zf-rbx1       RING-H2 zinc finger domain
     0.0018   18.3   2.9       0.01   15.9   2.9    2.2  1  zf-ANAPC11    Anaphase-promoting complex subunit 11 RING-H2 f
  ------ inclusion threshold ------
      0.069   13.0   1.7       0.16   11.8   1.7    1.6  1  zf-primase    Primase zinc finger
      0.098   11.3   0.4       0.23   10.1   0.2    1.6  2  RdRP          RNA dependent RNA polymerase
        1.7    8.0   3.9       0.67    9.3   0.2    2.3  2  zf-RanBP      Zn-finger in Ran binding protein and others
        1.8    8.8  12.9      0.068   13.3   5.5    2.5  2  zf-C3HC4_4    zinc finger of C3HC4-type, RING
        2.2    8.5   7.1       0.38   10.9   2.2    2.3  2  FANCL_C       FANCL C-terminal domain
        5.8    6.5  12.5        0.7    9.5   7.6    2.0  2  DUF4207       Domain of unknown function (DUF4207)
        8.1    6.5  15.7      0.047   13.7   5.5    2.7  3  zf-RING_5     zinc-RING finger domain


Domain annotation for each model (and alignments):
>> zf-C3HC4  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   1.2       1.4   1.7e+03       1      17 [.       7      25 ..       7      27 .. 0.78
   2 !   34.0   7.3   1.6e-11     2e-08       1      41 []     325     375 ..     325     375 .. 0.97

  Alignments for each domain:
  == domain 1  score: -1.0 bits;  conditional E-value: 1.4
                -TTT-S--SS-E...E-TT CS
    zf-C3HC4  1 CpiCleeakepn..elleC 17
                C++C++++++ +  ++l C
  KOO25358.1  7 CKLCQKTVEDDQdsTTLIC 25
                9******999885555555 PP

  == domain 2  score: 34.0 bits;  conditional E-value: 1.6e-11
                 -TTT-S--SS-E.E-TTS--B-CHHHHHHHHC...........TSSB--TTT CS
    zf-C3HC4   1 CpiCleeakepnelleCkHsfCskCirkilks...........rkkvkCPlC 41 
                 CpiCl+e +++  l +C H+fC +Ci++++++           ++ ++CPlC
  KOO25358.1 325 CPICLDEKAIIE-LRPCAHAFCAHCIDSWIEQnssfaqtirrgSSITTCPLC 375
                 ***********9.***************************99989999**** PP

>> zf-RING_2  Ring finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.3   0.7     0.086     1e+02       2      24 ..       6      27 ..       5      68 .. 0.70
   2 !   33.9   7.6   2.5e-11     3e-08       2      44 .]     324     376 ..     323     376 .. 0.89

  Alignments for each domain:
  == domain 1  score: 3.3 bits;  conditional E-value: 0.086
   zf-RING_2  2 eCpICleelssadsvlllpCgHv 24
                +C +C++ ++++++ ++l C H 
  KOO25358.1  6 NCKLCQKTVEDDQDSTTLIC-HA 27
                7*****99988777666669.63 PP

  == domain 2  score: 33.9 bits;  conditional E-value: 2.5e-11
   zf-RING_2   2 eCpICleelssadsvlllpCgHvfhreClerwlrssst.............CPlCr 44 
                 +CpICl   +++  + l pC H f+ +C++ w++++s+             CPlCr
  KOO25358.1 324 DCPICL---DEKAIIELRPCAHAFCAHCIDSWIEQNSSfaqtirrgssittCPLCR 376
                 7****9...544555566*******************9*****************9 PP

>> Prok-RING_4  Prokaryotic RING finger family 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.1       1.4   1.7e+03      32      43 ..       6      17 ..       2      20 .. 0.77
   2 !   26.3   4.7     4e-09   4.8e-06       1      43 [.     325     382 ..     325     385 .. 0.90

  Alignments for each domain:
  == domain 1  score: -1.0 bits;  conditional E-value: 1.4
  Prok-RING_4 32 sCPlCqrrisks 43
                  C lCq+ ++++
   KOO25358.1  6 NCKLCQKTVEDD 17
                 599999998765 PP

  == domain 2  score: 26.3 bits;  conditional E-value: 4e-09
  Prok-RING_4   1 CvlCgeqekkailepCgHlvCkeCfdsk...dls.............sCPlCqrrisks 43 
                  C +C  ++  + l pC+H +C +C ds+   + s             +CPlC+  ++++
   KOO25358.1 325 CPICLDEKAIIELRPCAHAFCAHCIDSWieqN-SsfaqtirrgssitTCPLCRATVNDT 382
                  99**************************9744.359999**************999876 PP

>> zf-C3HC4_2  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   2.5       7.5     9e+03       2      15 ..       7      20 ..       6      48 .. 0.64
   2 !   25.4   2.9   7.7e-09   9.2e-06       2      35 ..     325     357 ..     324     358 .. 0.90
   3 ?   -1.0   0.0       1.4   1.7e+03      36      40 .]     371     375 ..     363     384 .. 0.77
   4 ?   -2.9   0.3       5.3   6.3e+03       2       6 ..    1100    1104 ..    1098    1106 .. 0.62

  Alignments for each domain:
  == domain 1  score: -3.4 bits;  conditional E-value: 7.5
  zf-C3HC4_2  2 CpiCldmlkdpsvv 15
                C++C+   +d  ++
  KOO25358.1  7 CKLCQKTVEDDQDS 20
                77887777765443 PP

  == domain 2  score: 25.4 bits;  conditional E-value: 7.7e-09
  zf-C3HC4_2   2 CpiCldmlkdpsvvtpCgHvfCqkCilrsLeekn 35 
                 CpiCld+    + + pC H fC+ Ci+ ++e+++
  KOO25358.1 325 CPICLDEKAI-IELRPCAHAFCAHCIDSWIEQNS 357
                 ******9775.7999**************99875 PP

  == domain 3  score: -1.0 bits;  conditional E-value: 1.4
  zf-C3HC4_2  36 eCPlC 40 
                  CPlC
  KOO25358.1 371 TCPLC 375
                 57777 PP

  == domain 4  score: -2.9 bits;  conditional E-value: 5.3
  zf-C3HC4_2    2 CpiCl 6   
                  C+iC+
  KOO25358.1 1100 CEICQ 1104
                  66665 PP

>> zf-C3HC4_3  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.2       1.2   1.4e+03       5      47 ..       7      14 ..       4      32 .. 0.58
   2 !   24.7   5.7   1.3e-08   1.5e-05       3      49 ..     323     381 ..     321     382 .. 0.93

  Alignments for each domain:
  == domain 1  score: -0.8 bits;  conditional E-value: 1.2
                -TTTSSSBS-EEETTEEEEEE-HHHHHHHHHTT-B-TTT--B- CS
  zf-C3HC4_3  5 CviClerprnvvllpCgHlvlCeeCaekllkrkkkCpiCrrpi 47
                C++C++                                    +
  KOO25358.1  7 CKLCQK-----------------------------------TV 14
                444444...................................33 PP

  == domain 2  score: 24.7 bits;  conditional E-value: 1.3e-08
                 SB-TTTSSSBS-EEETTEEEEEE-HHHHHHHHH.............TT-B-TTT--B--E CS
  zf-C3HC4_3   3 eeCviClerprnvvllpCgHlvlCeeCaekllk.............rkkkCpiCrrpiek 49 
                 e C+iCl++++ + l pC H  +C +C +++ +             + ++Cp+Cr+ +++
  KOO25358.1 323 EDCPICLDEKAIIELRPCAHA-FCAHCIDSWIEqnssfaqtirrgsSITTCPLCRATVND 381
                 57*******************.*********98999******9999999******99875 PP

>> zf-RING_UBOX  RING-type zinc-finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.2   4.5   4.4e-08   5.3e-05       1      38 [.     325     372 ..     325     373 .. 0.67

  Alignments for each domain:
  == domain 1  score: 23.2 bits;  conditional E-value: 4.4e-08
  zf-RING_UBOX   1 CpIClelftdPlv.l.pCGHtFCreCl..w........elskslegafkC 38 
                   CpICl++    ++ l pC H FC +C+  w        ++ ++++   +C
    KOO25358.1 325 CPICLDEK--AIIeLrPCAHAFCAHCIdsWieqnssfaQTIRRGSSITTC 372
                   *****855..3345558**********98654445555555555555555 PP

>> zf-rbx1  RING-H2 zinc finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   1.0       3.1   3.7e+03       2      23 ..       6      31 ..       5      50 .. 0.57
   2 !   22.4   4.1   9.6e-08   0.00011      14      55 .]     325     376 ..     319     376 .. 0.82

  Alignments for each domain:
  == domain 1  score: -1.7 bits;  conditional E-value: 3.1
     zf-rbx1  2 tCaiCrnele....eacieckapgde 23
                +C  C++++e    ++ + c+a g++
  KOO25358.1  6 NCKLCQKTVEddqdSTTLICHAAGQT 31
                79999988873332344555555554 PP

  == domain 2  score: 22.4 bits;  conditional E-value: 9.6e-08
     zf-rbx1  14 cieckapgdeecpvvlGeCgHaFHlhCiskWlkt.............rkvCPlcr 55 
                 c+ c  ++     + l  C HaF  hCi++W+++              ++CPlcr
  KOO25358.1 325 CPICLDEK---AIIELRPCAHAFCAHCIDSWIEQnssfaqtirrgssITTCPLCR 376
                 55554443...4577889****************9******999987789****8 PP

>> zf-ANAPC11  Anaphase-promoting complex subunit 11 RING-H2 finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   2.9   8.6e-06      0.01      38      80 ..     325     378 ..     316     383 .. 0.66

  Alignments for each domain:
  == domain 1  score: 15.9 bits;  conditional E-value: 8.6e-06
                 CSTTTTTS-EE.EBTTS-EEEHHHHHHHHHHHST..........SSB-TTTSSB CS
  zf-ANAPC11  38 ckfpGddcplv.lGkckhnfhlhcilkwletets..........kglcpmcrqt 80 
                 c +  d+ +++ l  c h+f +hci  w+e+++s             cp+cr t
  KOO25358.1 325 CPICLDEKAIIeLRPCAHAFCAHCIDSWIEQNSSfaqtirrgssITTCPLCRAT 378
                 445556666662556***************987622222111113468888876 PP

>> zf-primase  Primase zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   1.7   0.00013      0.16       7      43 ..     127     163 ..     124     167 .. 0.89

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 0.00013
  zf-primase   7 glCkatkkdgkkCgswvnkrkgeyCdfHvqsavkkar 43 
                  +C+  k dg++Cg+ +  ++  +C+ Hv+ a +k +
  KOO25358.1 127 NRCREFKADGTRCGRNIFDQELGVCKLHVEVAKRKIK 163
                 58****************************9999876 PP

>> RdRP  RNA dependent RNA polymerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.0       1.7   2.1e+03      57      80 ..     155     178 ..     122     184 .. 0.75
   2 ?   10.1   0.2   0.00019      0.23     430     482 ..     598     650 ..     587     690 .. 0.70

  Alignments for each domain:
  == domain 1  score: -3.0 bits;  conditional E-value: 1.7
        RdRP  57 kkvlkegiviagrkfeflafsdsq 80 
                  +v+k++i++agr+++ l +++  
  KOO25358.1 155 VEVAKRKIKCAGREWRGLRARQRR 178
                 67999***********99877755 PP

  == domain 2  score: 10.1 bits;  conditional E-value: 0.00019
        RdRP 430 rslaselsGGDlDGDkywViwdpelefapakpsneepadyeea.kpkeldrevt 482
                   la +l  GDlDGD+ + +  p+l++++  ++++ ++d+eea ++kel+++ +
  KOO25358.1 598 SRLAAMLEDGDLDGDDGLLSSIPSLKLEDD-DKADAEEDEEEAaRRKELEEQRK 650
                 5799********************984232.23233333332345556654433 PP

>> zf-RanBP  Zn-finger in Ran binding protein and others
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3   0.2   0.00056      0.67       1      15 [.    1070    1084 ..    1070    1086 .. 0.90
   2 ?   -3.1   0.4       4.4   5.2e+03      21      26 ..    1100    1105 ..    1100    1106 .. 0.86

  Alignments for each domain:
  == domain 1  score: 9.3 bits;  conditional E-value: 0.00056
                  GSSSEE-SSS--EEE CS
    zf-RanBP    1 regdWdCskClvqNf 15  
                  ++g W C +C++ N+
  KOO25358.1 1070 PAGPWRCEHCTFENR 1084
                  58*********9996 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 4.4
                  -TTT-- CS
    zf-RanBP   21 CvaCqa 26  
                  C++Cq+
  KOO25358.1 1100 CEICQG 1105
                  9***97 PP

>> zf-C3HC4_4  zinc finger of C3HC4-type, RING
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.7       4.4   5.3e+03      21      39 ..       7      25 ..       6      27 .. 0.85
   2 ?   13.3   5.5   5.7e-05     0.068       1      42 []     325     375 ..     325     375 .. 0.73

  Alignments for each domain:
  == domain 1  score: -2.3 bits;  conditional E-value: 4.4
  zf-C3HC4_4 21 ClsCisslqkepdgeqllC 39
                C  C + +  ++d++ l C
  KOO25358.1  7 CKLCQKTVEDDQDSTTLIC 25
                8889999999999999999 PP

  == domain 2  score: 13.3 bits;  conditional E-value: 5.7e-05
  zf-C3HC4_4   1 CPiCldYLekPv.sl.eCGhsfClsCisslqkepdgeq.........llCplC 42 
                 CPiCld  ek +  l +C h fC +Ci+s+ +++++            +CplC
  KOO25358.1 325 CPICLD--EKAIiELrPCAHAFCAHCIDSWIEQNSSFAqtirrgssiTTCPLC 375
                 999988..333213336**************9998765566667777777777 PP

>> FANCL_C  FANCL C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.2       3.4   4.1e+03       4      26 ..       6      28 ..       5      64 .. 0.64
   2 ?   10.9   2.2   0.00032      0.38      25      66 ..     337     380 ..     322     384 .. 0.79

  Alignments for each domain:
  == domain 1  score: -1.9 bits;  conditional E-value: 3.4
                S-SSS--SS-TT-----B--S-T CS
     FANCL_C  4 eCgiCyayrldsgevpdisCdne 26
                +C +C     d++  ++  C  +
  KOO25358.1  6 NCKLCQKTVEDDQDSTTLICHAA 28
                58888777777777777777543 PP

  == domain 2  score: 10.9 bits;  conditional E-value: 0.00032
                 -TT----B-SGGGHHHHHHHHSSS-TTT..--EEE-TTT-SEEE CS
     FANCL_C  25 nekCnkkfHsaCLkeWlrslkesrqsfd..vlfGeCPyCkkkis 66 
                    C++ f ++C+  W++++++  q +    ++ +CP C++ ++
  KOO25358.1 337 LRPCAHAFCAHCIDSWIEQNSSFAQTIRrgSSITTCPLCRATVN 380
                 45699*****************99999734699******99885 PP

>> DUF4207  Domain of unknown function (DUF4207)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   7.6   0.00059       0.7     104     159 ..     628     683 ..     622     700 .. 0.72
   2 ?   -3.5   0.2       5.7   6.8e+03      12      71 ..     856     866 ..     840     894 .. 0.49

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 0.00059
     DUF4207 104 ekeereekeqeaeeRkklae.ekykeWlkkKarqekkereekkkqkaaekasasssa 159
                 +k+  ee+e+ea+ Rk+l e  k+ eW+kk  r++k++++   + ++  +++ +ss+
  KOO25358.1 628 DKADAEEDEEEAARRKELEEqRKHAEWMKKIDREAKEKKTAAASGSSPAHSA-TSSQ 683
                 67888999999999999876168******99999999998877766655444.2222 PP

  == domain 2  score: -3.5 bits;  conditional E-value: 5.7
     DUF4207  12 ssrsfeledeeeeeeekessestaswselyeeelkesesesnlvpslelssssssleylr 71 
                 +s  +e+++                                                  r
  KOO25358.1 856 ESARREMQSM-------------------------------------------------R 866
                 1111111111.................................................1 PP

>> zf-RING_5  zinc-RING finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.6       4.7   5.6e+03       1      20 [.       6      25 ..       6      26 .. 0.69
   2 ?   -3.4   0.0       8.4     1e+04       4      14 ..      41      49 ..      40      53 .. 0.73
   3 ?   13.7   5.5   3.9e-05     0.047       2      43 ..     325     376 ..     324     377 .. 0.91

  Alignments for each domain:
  == domain 1  score: -2.6 bits;  conditional E-value: 4.7
   zf-RING_5  1 hCnkCfeklskeekfyltsC 20
                +C+ C + ++++++  ++ C
  KOO25358.1  6 NCKLCQKTVEDDQDSTTLIC 25
                58889988866666666665 PP

  == domain 2  score: -3.4 bits;  conditional E-value: 8.4
   zf-RING_5  4 kCfeklskeek 14
                kC+e++  +++
  KOO25358.1 41 KCWERF--KKQ 49
                8***99..444 PP

  == domain 3  score: 13.7 bits;  conditional E-value: 3.9e-05
   zf-RING_5   2 CnkCfeklskeekfyltsCgHifCekClkkll.............ekeavCpiCr 43 
                 C++C ++      + l +C H fC +C++                 +  +Cp+Cr
  KOO25358.1 325 CPICLDEK---AIIELRPCAHAFCAHCIDSWIeqnssfaqtirrgSSITTCPLCR 376
                 88888888...888999************9999999********9999******8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1112 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1469  (0.0819343); expected 358.6 (0.02)
Passed bias filter:                      634  (0.0353617); expected 358.6 (0.02)
Passed Vit filter:                        91  (0.00507558); expected 17.9 (0.001)
Passed Fwd filter:                        23  (0.00128284); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              15  [number of targets reported over threshold]
# CPU time: 0.95u 0.31s 00:00:01.26 Elapsed: 00:00:00.51
# Mc/sec: 6563.46
//
Query:       KOO25359.1  [L=269]
Description: cellulase (glycosyl hydrolase family 5) subfamily protein, partial [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.1e-14   54.6   0.0    1.4e-14   54.3   0.0    1.0  1  Cellulase  Cellulase (glycosyl hydrolase family 5)


Domain annotation for each model (and alignments):
>> Cellulase  Cellulase (glycosyl hydrolase family 5)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.3   0.0   7.6e-19   1.4e-14      23     230 ..      11     252 ..       4     265 .. 0.83

  Alignments for each domain:
  == domain 1  score: 54.3 bits;  conditional E-value: 7.6e-19
                 HHHHHHHHHHHT-SEEEEEEECTGGTTSSTTT..........GCTHHHHHHHHHHHHHHHHTT-EEEEEEESS...........TTTCSSSSTTTTHHH CS
   Cellulase  23 tkalidevkdagfntvRlpvswgelvenapdy..........kvdenslerveevvkyakenglyvildiHse...........egwltkadgnssedt 100
                  + +++ +++  fn +Rlp+  ++++ na+ +          +    +++ ++++ k+a ++g  ++l   +            ++w      +s e +
  KOO25359.1  11 LDYYLTFLQQHSFNGIRLPFDHDRMLRNAIVVdshhvrlapeLLHLRYVNVFTTIAKAAARRGQLIVLACDRLtfsaapgqpgsGLW------YSGEVS 103
                 566789999************9999987777766666665555666***********************999877777555555555......555555 PP

                 HHHHHHHHHHHHHHHHTTTTTTEEEESSSS--STTCTCCT........CHHHTTHHHHHHHHHHHHHHHHTTSSEEEEECHH...............HH CS
   Cellulase 101 aeeffkklwtqiAerykkndevvifelmNEPhgnntgaew........tseeadevkayaeeaikaIRavgpnrliivegns...............ws 176
                  ee+ +  w+ iA+ + ++ +v++ +l   P+     a+w        t + a++++a+a +  + +++  p +l++veg++               w+
  KOO25359.1 104 -EEQVQRSWAHIADVLCSQWNVIGVDLQSQPFR----ASWdspgkgppTFNPATDWNAAATRLGNFVLSKCPRWLVFVEGVGetpgardqqleggafWG 197
                 .5666666*************************....55666668899999**********************************************77 PP

                 TBHHHHHCTSG...SSSSTTEEEEEEEETTTHHHTGCGSHSCTHHHHHHHHHHHHHH CS
   Cellulase 177 gnldgavlndP...ndsqdnliysvHfYgpsdfaqtefgkdltdktnlaqrledaak 230
                 +nl g + ++P   +   ++l+ys+ +Ygps+++  +  ++  ++ n+++ ++++++
  KOO25359.1 198 ENLWG-ARQNPiklS-TPSHLVYSPVAYGPSVYGAFSYFQQPSFPANMDKVWQAHFG 252
                 77777.555553321.349*************977665599999********99986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (269 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       222  (0.0123822); expected 358.6 (0.02)
Passed bias filter:                      213  (0.0118802); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.24s 00:00:00.67 Elapsed: 00:00:00.41
# Mc/sec: 1972.43
//
Query:       KOO25360.1  [L=548]
Description: hypothetical protein Ctob_007820 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
       0.08   12.8   0.3       0.22   11.4   0.3    1.8  1  Hypoth_Ymh  Protein of unknown function (Hypoth_ymh)


Domain annotation for each model (and alignments):
>> Hypoth_Ymh  Protein of unknown function (Hypoth_ymh)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.3   1.2e-05      0.22      13      59 ..      66     112 ..      43     133 .. 0.88

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 1.2e-05
  Hypoth_Ymh  13 kellaenyreAvseAikaledrvreksgltkdgkeLmqeafsakkpl 59 
                 + ++++++++A  +A+ a +++ r+   +++d+++ m++a++a ++ 
  KOO25360.1  66 AAVEDGEFDDAALDAAVAATEAARKPPASEEDEDDAMEKALAAAEAT 112
                 67899*************************************99854 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (548 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1213  (0.0676558); expected 358.6 (0.02)
Passed bias filter:                      321  (0.017904); expected 358.6 (0.02)
Passed Vit filter:                        54  (0.00301188); expected 17.9 (0.001)
Passed Fwd filter:                        24  (0.00133861); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.86u 0.34s 00:00:01.20 Elapsed: 00:00:00.48
# Mc/sec: 3437.50
//
Query:       KOO25361.1  [L=188]
Description: hypothetical protein Ctob_007823 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
     0.0037   16.5   2.6     0.0044   16.2   2.6    1.1  1  DUF979           Protein of unknown function (DUF979)
     0.0055   17.0   3.4      0.021   15.1   0.1    2.2  2  DUF4064          Protein of unknown function (DUF4064)
     0.0066   14.8   2.2     0.0077   14.6   2.2    1.1  1  DUF2070          Predicted membrane protein (DUF2070)
     0.0099   16.3   2.4       0.02   15.3   2.4    1.4  1  FeoB_associated  FeoB-associated Cys-rich membrane protein
  ------ inclusion threshold ------
      0.012   15.8   2.5      0.025   14.8   1.8    1.9  2  Glycophorin_A    Glycophorin A
      0.014   15.1   0.3      0.038   13.8   0.3    1.8  1  Adeno_E3_CR2     Adenovirus E3 region protein CR2
      0.016   15.6   0.9      0.023   15.1   0.9    1.3  1  DUF4199          Protein of unknown function (DUF4199)
      0.037   14.7   0.3      0.081   13.6   0.0    1.7  2  RCR              Chitin synthesis regulation, resistance to C
      0.072   12.6   1.7      0.094   12.2   1.7    1.2  1  Stevor           Subtelomeric Variable Open Reading frame
      0.074   11.8   0.3      0.077   11.7   0.3    1.1  1  DUF2207          Predicted membrane protein (DUF2207)
       0.13   13.2   0.0       0.44   11.5   0.0    1.9  1  EphA2_TM         Ephrin type-A receptor 2 transmembrane domai
       0.18   11.8   8.5        3.4    7.7   8.5    2.1  1  DUF441           Protein of unknown function (DUF441)
        3.1    7.3   7.8       0.65    9.4   2.8    2.3  2  MtrF             Tetrahydromethanopterin S-methyltransferase,


Domain annotation for each model (and alignments):
>> DUF979  Protein of unknown function (DUF979)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   2.6   3.2e-06    0.0044      51     152 ..      45     149 ..      16     157 .. 0.73

  Alignments for each domain:
  == domain 1  score: 16.2 bits;  conditional E-value: 3.2e-06
      DUF979  51 vvGvlvivlallagfkqvkkgklkesseeereksakklgnklflpallipvvalvvalllkklk....alldakk.tklatlvalglgavvalivalvl 144
                  +G +++ + +l+ + + +  +++   ++  ++ ++ + +   +  + i+v+a++++ ++++++    +ll  ++ ++ +t++++++g+++al++alv+
  KOO25361.1  45 SAGSVIVSVRILTPTATAASVQST--MANAMSNPSSATAMFANVTGFSITVLAVLTTPTIANVAppppPLLAVETsFSPGTIIGIIIGVIIALVLALVF 141
                 456666666666665544444444..44444444444455555778899999999999988888899855555544799******************** PP

      DUF979 145 tkekpkea 152
                 +++  k+ 
  KOO25361.1 142 MRHLNKKR 149
                 99876654 PP

>> DUF4064  Protein of unknown function (DUF4064)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.3   0.9      0.14     2e+02      31      70 ..      58      97 ..      39     106 .. 0.63
   2 !   15.1   0.1   1.5e-05     0.021      56      90 ..     119     154 ..     108     157 .. 0.82

  Alignments for each domain:
  == domain 1  score: 2.3 bits;  conditional E-value: 0.14
     DUF4064 31 ssgefsqelteeqalsgedasavleflstllivlgviali 70
                 +   +  ++++ +++ + +sa++ f +++++ ++v+a++
  KOO25361.1 58 PTATAASVQSTMANAMSNPSSATAMFANVTGFSITVLAVL 97
                3444444445557777777888888888887777777665 PP

  == domain 2  score: 15.1 bits;  conditional E-value: 1.5e-05
     DUF4064  56 flstllivlgvialiaivlgivgalllkknkk.vsG 90 
                 f  +++i ++++++ia+vl +v++  l+k+++ ++G
  KOO25361.1 119 FSPGTIIGIIIGVIIALVLALVFMRHLNKKRRkKAG 154
                 444566788888****************99986777 PP

>> DUF2070  Predicted membrane protein (DUF2070)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.6   2.2   5.6e-06    0.0077     101     187 ..      62     157 ..       9     159 .. 0.58

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 5.6e-06
     DUF2070 101 llalvlslalvfalrllvlvavsdesllkavlpaliqpllailllvly...........................fspesfllllllslifalavylfi 172
                   ++  ++a +++++   + ++++ + +                   +                           fsp +++ +++ ++i ++++++f+
  KOO25361.1  62 AASVQSTMANAMSNPSSATAMFANVTGFS------------------ItvlavlttptianvapppppllavetsFSPGTIIGIIIGVIIALVLALVFM 142
                 11111112333333333333333333333..................1333333444444445555788888888899********************* PP

     DUF2070 173 vvvdrplkrnlgvsa 187
                 + ++++ ++++g+++
  KOO25361.1 143 RHLNKKRRKKAGLQV 157
                 **********99875 PP

>> FeoB_associated  FeoB-associated Cys-rich membrane protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   2.4   1.4e-05      0.02       3      26 ..     127     150 ..     123     156 .. 0.81

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 1.4e-05
  FeoB_associated   3 iIVgliiaaavafvirrlikkkkk 26 
                      iI+g+iia+++a+v+ r+  kk+ 
       KOO25361.1 127 IIIGVIIALVLALVFMRHLNKKRR 150
                      8*************8888888543 PP

>> Glycophorin_A  Glycophorin A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.7   0.5      0.44   6.1e+02      23      36 ..      57      70 ..      20     105 .. 0.51
   2 ?   14.8   1.8   1.8e-05     0.025      25      93 ..      90     157 ..      59     171 .. 0.62

  Alignments for each domain:
  == domain 1  score: 0.7 bits;  conditional E-value: 0.44
                   XXXXXXXXXXXXXX CS
  Glycophorin_A 23 tpsahevseltirt 36
                   tp+a+ +s+ ++  
     KOO25361.1 57 TPTATAASVQSTMA 70
                   33333333222221 PP

  == domain 2  score: 14.8 bits;  conditional E-value: 1.8e-05
                    XXXXXXXXXXXXXXXXXXXX.XXXXSSSSSSS-TTHHHHHHHHHHHHHHHHHHHHHHHHTHSXXXXXXX CS
  Glycophorin_A  25 sahevseltirtevaaeqeetgereqlvhdFselvitliifgvmAgvigtillisYlirRliKKssvdv 93 
                    s+++ ++lt++t  +++         ++  Fs   i++ii+gv+ ++++ ++++  l ++ +KK+  +v
     KOO25361.1  90 SITVLAVLTTPTIANVAPPP-PPLLAVETSFSPGTIIGIIIGVIIALVLALVFMRHLNKKRRKKAGLQV 157
                    34444444444444444333.333456789*********************999999999999875544 PP

>> Adeno_E3_CR2  Adenovirus E3 region protein CR2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.3   2.7e-05     0.038       2      24 ..     121     142 ..     120     154 .. 0.79

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 2.7e-05
  Adeno_E3_CR2   2 PsstiaIivaVvvGlaiIiicml 24 
                   P+++i+Ii +V++ l+ ++++++
    KOO25361.1 121 PGTIIGIIIGVIIALV-LALVFM 142
                   899**********986.566666 PP

>> DUF4199  Protein of unknown function (DUF4199)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.1   0.9   1.7e-05     0.023      82     168 .]      43     143 ..      22     143 .. 0.57

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 1.7e-05
     DUF4199  82 llsavfqyiyfnfidpdfienyiaeilekleeakeesaeeenaemseeeikealesls..................pi...iv.alqsflgnliiGlil 158
                  +sa   ++ ++ + p++ +  +++++++++++  ++++     m+++ +  +++ ++                  p+      +  + +  +iiG+i+
  KOO25361.1  43 TISAGSVIVSVRILTPTATAASVQSTMANAMSNPSSATA-----MFANVT--GFS-ITvlavlttptianvappppPLlavETsFSPGTIIGIIIGVII 133
                 677777788888888887777777776665544332222.....222222..222.1122233345555666766421444333666777777777778 PP

     DUF4199 159 sliiAlilkk 168
                 +l++Al++++
  KOO25361.1 134 ALVLALVFMR 143
                 8887777775 PP

>> RCR  Chitin synthesis regulation, resistance to Congo red
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.1       4.6   6.4e+03      14      14 ..      95      95 ..      55     111 .. 0.52
   2 ?   13.6   0.0   5.9e-05     0.081       4      37 ..     128     161 ..     126     185 .. 0.85

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 4.6
         RCR 14 l 14
                +
  KOO25361.1 95 A 95
                0 PP

  == domain 2  score: 13.6 bits;  conditional E-value: 5.9e-05
         RCR   4 lfaiiivlillvllltlrvakrRrrrGlqplygt 37 
                 ++ +ii+l+l+++++  ++ krR++ Glq+  g+
  KOO25361.1 128 IIGVIIALVLALVFMRHLNKKRRKKAGLQVPNGQ 161
                 678899999999999999999*******987775 PP

>> Stevor  Subtelomeric Variable Open Reading frame
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   1.7   6.8e-05     0.094     156     263 ..      44     152 ..      17     154 .. 0.57

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 6.8e-05
      Stevor 156 csvgsvlltliglaaakaaavaakvalsaealkklasslsilnlfsesslesalkaavsaaaasdlagta..asaassafep...ygiaalvllilavv 249
                  s gsv++++  l+ +++aa     +++a+a+++  s+++++  ++  s++  + a +++ +++++a       a+ + f p    gi + v++ l+++
  KOO25361.1  44 ISAGSVIVSVRILTPTATAASVQ--STMANAMSNPSSATAMFANVTGFSIT--VLAVLTTPTIANVAPPPppLLAVETSFSPgtiIGIIIGVIIALVLA 138
                 67889999887666555555444..23334444444444444444444443..2244444444444444432334445566622245555555555556 PP

      Stevor 250 liiLYiwlyrRRKn 263
                 l+++    ++RRK+
  KOO25361.1 139 LVFMRHLNKKRRKK 152
                 66655566788886 PP

>> DUF2207  Predicted membrane protein (DUF2207)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.3   5.6e-05     0.077     382     444 ..      76     152 ..      11     157 .. 0.70

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 5.6e-05
     DUF2207 382 klsalglgliilglilillallllvll................lvfllilllillliaiivlllfsrllgrrteeGael 444
                  +sa + ++ + g+ +++la+l+  ++                +++  i+++i+++i+++vl+l   ++++++++ ++ 
  KOO25361.1  76 PSSATAMFANVTGFSITVLAVLTTPTIanvapppppllavetsFSPGTIIGIIIGVIIALVLALV--FMRHLNKKRRKK 152
                 3333333444444444333333333335666779*********9999999999999999998887..777777666554 PP

>> EphA2_TM  Ephrin type-A receptor 2 transmembrane domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   0.00032      0.44       2      31 ..     124     153 ..     122     186 .. 0.46

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.00032
    EphA2_TM   2 iaaavaglvllvilvilvlvlvrrrsknrk 31 
                 i+++++g+++ ++l ++++  +++++++++
  KOO25361.1 124 IIGIIIGVIIALVLALVFMRHLNKKRRKKA 153
                 334444444444433333333333333222 PP

>> DUF441  Protein of unknown function (DUF441)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.7   8.5    0.0025       3.4      44     119 ..      43     132 ..      30     142 .. 0.66

  Alignments for each domain:
  == domain 1  score: 7.7 bits;  conditional E-value: 0.0025
      DUF441  44 glelGviiltiavLvPiatgkislkellealkslkglial...lvgilvavlsgkGve...........llkeqpevvvalvlGtilgvv 119
                 +++ G +i+ + +L+P at     +++++a++++++ +a+   ++g+ ++vl+                ll+ ++++  + ++G i+gv+
  KOO25361.1  43 TISAGSVIVSVRILTPTATAASVQSTMANAMSNPSSATAMfanVTGFSITVLAVLTTPtianvapppppLLAVETSFSPGTIIGIIIGVI 132
                 688999**************9999999999998877666622256887877765544300011222222445554444455555555544 PP

>> MtrF  Tetrahydromethanopterin S-methyltransferase, F subunit (MtrF)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.2      0.79   1.1e+03      38      52 ..      82      96 ..      78     102 .. 0.57
   2 ?    9.4   2.8   0.00047      0.65      41      58 ..     123     140 ..     115     142 .. 0.89

  Alignments for each domain:
  == domain 1  score: -0.9 bits;  conditional E-value: 0.79
        MtrF 38 satgivGfaiGfvlA 52
                + ++++Gf i ++ +
  KOO25361.1 82 MFANVTGFSITVLAV 96
                455666666644433 PP

  == domain 2  score: 9.4 bits;  conditional E-value: 0.00047
        MtrF  41 givGfaiGfvlAllLvvl 58 
                 +i+G++iG+++Al+L+++
  KOO25361.1 123 TIIGIIIGVIIALVLALV 140
                 699************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (188 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1266  (0.0706119); expected 358.6 (0.02)
Passed bias filter:                      725  (0.0404373); expected 358.6 (0.02)
Passed Vit filter:                       113  (0.00630264); expected 17.9 (0.001)
Passed Fwd filter:                        15  (0.000836633); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 0.46u 0.27s 00:00:00.73 Elapsed: 00:00:00.42
# Mc/sec: 1357.89
//
Query:       KOO25362.1  [L=201]
Description: hypothetical protein Ctob_007822 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (201 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       433  (0.0241508); expected 358.6 (0.02)
Passed bias filter:                      374  (0.0208601); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.41u 0.23s 00:00:00.64 Elapsed: 00:00:00.39
# Mc/sec: 1533.36
//
Query:       KOO25363.1  [L=1137]
Description: protein arginine methyltransferase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    7.7e-19   66.2  15.9      0.002   18.1   0.0    7.4  6  TPR_2            Tetratricopeptide repeat
    5.9e-15   54.4  16.2      0.013   15.3   0.2    7.0  7  TPR_1            Tetratricopeptide repeat
    4.7e-14   52.7   7.2     0.0012   19.3   0.6    5.1  4  TPR_19           Tetratricopeptide repeat
    1.1e-11   44.2   0.7      0.064   13.0   0.1    5.0  5  TPR_11           TPR repeat
    1.5e-11   44.7  19.8     0.0017   19.0   0.0    5.7  4  TPR_16           Tetratricopeptide repeat
    3.9e-09   36.0   9.0        1.1    9.7   0.0    6.8  6  TPR_8            Tetratricopeptide repeat
    2.7e-08   33.6   1.0        1.1    9.8   0.0    5.7  6  TPR_17           Tetratricopeptide repeat
    9.6e-08   32.2  12.5          1   10.3   1.8    6.6  5  TPR_14           Tetratricopeptide repeat
    1.2e-07   31.9  14.1     0.0066   16.7   0.9    5.4  6  TPR_12           Tetratricopeptide repeat
    1.1e-05   25.5   4.4     0.0018   18.5   0.3    3.2  2  ANAPC3           Anaphase-promoting complex, cyclosome, subun
    4.1e-05   24.2   0.1    0.00039   21.1   0.1    2.7  2  Methyltransf_25  Methyltransferase domain
    0.00016   21.5  10.4      0.081   13.0   0.0    5.4  5  TPR_7            Tetratricopeptide repeat
     0.0015   18.6  13.3          2    8.6   0.0    5.6  5  TPR_9            Tetratricopeptide repeat
     0.0021   17.6   0.2     0.0069   15.9   0.1    1.8  2  MTS              Methyltransferase small domain
  ------ inclusion threshold ------
      0.015   15.8  12.5      0.046   14.1   0.3    3.7  2  BTAD             Bacterial transcriptional activator domain
      0.038   14.6  15.4        8.4    7.3   1.6    6.8  7  TPR_6            Tetratricopeptide repeat
      0.046   12.9   0.8         10    5.2   0.3    2.6  3  FAT              FAT domain
      0.061   14.1   0.2       0.94   10.3   0.1    2.8  2  Methyltransf_12  Methyltransferase domain
       0.44   11.6   5.1        1.8    9.6   0.2    4.2  3  Methyltransf_24  Methyltransferase domain
        5.6    7.0  11.2         19    5.3   1.2    5.0  4  TPR_10           Tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> TPR_2  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.9   0.1   0.00021      0.19       1      32 [.      56      87 ..      56      89 .. 0.89
   2 ?    3.3   0.0      0.12   1.1e+02       2      16 ..      91     105 ..      90     106 .. 0.91
   3 !   18.1   0.0   2.3e-06     0.002       2      34 .]     135     167 ..     134     167 .. 0.96
   4 !   12.4   0.5   0.00014      0.13       8      28 ..     376     396 ..     373     396 .. 0.93
   5 !   14.4   0.0   3.5e-05     0.031       3      33 ..     409     439 ..     407     440 .. 0.90
   6 !   11.0   0.2   0.00041      0.37       2      28 ..     442     468 ..     441     472 .. 0.85

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 0.00021
       TPR_2  1 aealynlGlayyklgdyeeAleafekAleldP 32
                a ++  +G+ + k+g++eeA+e++  +l+  P
  KOO25363.1 56 AAVCRDMGNEAVKAGRHEEAAEHYTSVLAAKP 87
                5678899******************9999877 PP

  == domain 2  score: 3.3 bits;  conditional E-value: 0.12
       TPR_2   2 ealynlGlayyklgd 16 
                 e+l+n++l+y++lg+
  KOO25363.1  91 EVLCNRALCYLHLGE 105
                 799**********96 PP

  == domain 3  score: 18.1 bits;  conditional E-value: 2.3e-06
       TPR_2   2 ealynlGlayyklgdyeeAleafekAleldPnn 34 
                 ++ly+ G+a++k ++++e ++ f k+ el+P+n
  KOO25363.1 135 KGLYRFGCALMKTKKWKESAAVFTKVCELEPDN 167
                 789****************************98 PP

  == domain 4  score: 12.4 bits;  conditional E-value: 0.00014
       TPR_2   8 GlayyklgdyeeAleafekAl 28 
                 G +++++g+ye+A++++ +Al
  KOO25363.1 376 GSIAFRAGQYERAIALYTEAL 396
                 8899****************8 PP

  == domain 5  score: 14.4 bits;  conditional E-value: 3.5e-05
       TPR_2   3 alynlGlayyklgdyeeAleafekAleldPn 33 
                 +l n++l+y+klg++e Al++  +A++  P+
  KOO25363.1 409 LLANRALCYLKLGEFESALADGHAAVRCVPD 439
                 689******************9999998886 PP

  == domain 6  score: 11.0 bits;  conditional E-value: 0.00041
       TPR_2   2 ealynlGlayyklgdyeeAleafekAl 28 
                 +++y++++a+++lg++ eA+  ++ +l
  KOO25363.1 442 KGYYRMAQALAQLGRLREARLRLQDVL 468
                 68*****************97666655 PP

>> TPR_1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.0       9.3   8.3e+03      19      32 ..      35      48 ..      34      49 .. 0.79
   2 !   10.7   0.0   0.00042      0.38       5      32 ..      60      87 ..      56      89 .. 0.85
   3 !    7.5   0.0    0.0043       3.9       2      16 ..      91     105 ..      90     106 .. 0.91
   4 !    8.8   0.0    0.0016       1.4       2      34 .]     135     167 ..     134     167 .. 0.93
   5 !   10.1   0.2   0.00062      0.56       8      28 ..     376     396 ..     374     396 .. 0.93
   6 !   15.3   0.2   1.5e-05     0.013       3      23 ..     409     429 ..     407     429 .. 0.90
   7 !    7.7   0.5    0.0035       3.2       2      20 ..     442     460 ..     441     461 .. 0.94

  Alignments for each domain:
  == domain 1  score: -3.1 bits;  conditional E-value: 9.3
                HHHHHHHHHHHHST CS
       TPR_1 19 eAleyyekALelnP 32
                 A+e+ ++A +  P
  KOO25363.1 35 GAIEDINEAFKQIP 48
                59****99987666 PP

  == domain 2  score: 10.7 bits;  conditional E-value: 0.00042
                HHHHHHHHHTT-HHHHHHHHHHHHHHST CS
       TPR_1  5 ynlGnayfklgkydeAleyyekALelnP 32
                  +Gn   k g+++eA e+y  +L   P
  KOO25363.1 60 RDMGNEAVKAGRHEEAAEHYTSVLAAKP 87
                5689*****************9998777 PP

  == domain 3  score: 7.5 bits;  conditional E-value: 0.0043
                 HHHHHHHHHHHHTT- CS
       TPR_1   2 kalynlGnayfklgk 16 
                 ++l+n++++y++lg+
  KOO25363.1  91 EVLCNRALCYLHLGE 105
                 689**********97 PP

  == domain 4  score: 8.8 bits;  conditional E-value: 0.0016
                 HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH CS
       TPR_1   2 kalynlGnayfklgkydeAleyyekALelnPnn 34 
                 k ly+ G a++k +k++e  + + k+ el+P+n
  KOO25363.1 135 KGLYRFGCALMKTKKWKESAAVFTKVCELEPDN 167
                 678888*************************98 PP

  == domain 5  score: 10.1 bits;  conditional E-value: 0.00062
                 HHHHHHTT-HHHHHHHHHHHH CS
       TPR_1   8 GnayfklgkydeAleyyekAL 28 
                 G + f+ g+y+ A++ y +AL
  KOO25363.1 376 GSIAFRAGQYERAIALYTEAL 396
                 778999**************8 PP

  == domain 6  score: 15.3 bits;  conditional E-value: 1.5e-05
                 HHHHHHHHHHHTT-HHHHHHH CS
       TPR_1   3 alynlGnayfklgkydeAley 23 
                  l n++++y+klg+++ Al++
  KOO25363.1 409 LLANRALCYLKLGEFESALAD 429
                 689***************986 PP

  == domain 7  score: 7.7 bits;  conditional E-value: 0.0035
                 HHHHHHHHHHHHTT-HHHH CS
       TPR_1   2 kalynlGnayfklgkydeA 20 
                 k +y++++a+ +lg++ eA
  KOO25363.1 442 KGYYRMAQALAQLGRLREA 460
                 68***************99 PP

>> TPR_19  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   0.0   8.3e-06    0.0075       2      40 ..      67     105 ..      66     106 .. 0.95
   2 ?    2.0   0.0      0.34     3e+02      11      34 ..     154     177 ..     138     195 .. 0.69
   3 !   19.3   0.6   1.4e-06    0.0012       2      45 ..     380     427 ..     379     428 .. 0.90
   4 !   13.9   0.4   6.3e-05     0.057      22      68 .]     438     486 ..     433     486 .. 0.88

  Alignments for each domain:
  == domain 1  score: 16.8 bits;  conditional E-value: 8.3e-06
      TPR_19   2 laegdyaeAlalleqalqedpknaearllLAeallalgq 40 
                 +++g+++eA+++++++l+++p + e++ + A ++l lg+
  KOO25363.1  67 VKAGRHEEAAEHYTSVLAAKPYDHEVLCNRALCYLHLGE 105
                 789***********************************8 PP

  == domain 2  score: 2.0 bits;  conditional E-value: 0.34
      TPR_19  11 lalleqalqedpknaearllLAea 34 
                 +a ++++ + +p+n ea  +L++a
  KOO25363.1 154 AAVFTKVCELEPDNVEASGRLIQA 177
                 566666666677777776666655 PP

  == domain 3  score: 19.3 bits;  conditional E-value: 1.4e-06
      TPR_19   2 laegdyaeAlalleqal...qedpk.naearllLAeallalgqldeAe 45 
                 + +g+y++A+al+++al   +++p+   +++++ A ++l+lg+++ A 
  KOO25363.1 380 FRAGQYERAIALYTEALpptDAKPElKVNLLANRALCYLKLGEFESAL 427
                 679**************99888898988888888************97 PP

  == domain 4  score: 13.9 bits;  conditional E-value: 6.3e-05
      TPR_19  22 pknaearllLAeallalgqldeAealLdalpeedpd..daryasLlAkl 68 
                 p+ +   +++A+al +lg+l eA+  L+++++  +   +a++++LlA l
  KOO25363.1 438 PDFGKGYYRMAQALAQLGRLREARLRLQDVLRVSKLgkNADASNLLAEL 486
                 7778889***********************9988877668888888865 PP

>> TPR_11  TPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.0   0.1   7.1e-05     0.064       1      42 []      63     104 ..      63     104 .. 0.95
   2 ?   -1.0   0.0       1.6   1.5e+03      20      40 ..     126     146 ..     126     148 .. 0.88
   3 !    8.4   0.0     0.002       1.8       3      30 ..     143     170 ..     141     171 .. 0.92
   4 !    8.5   0.0    0.0018       1.6       1      21 [.     376     396 ..     376     398 .. 0.89
   5 !    8.5   0.1    0.0018       1.6       4      42 .]     417     455 ..     415     455 .. 0.97

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 7.1e-05
      TPR_11   1 GdayyeqGkyeeAieaYkkAlkldPdnaeayynLGlayykqG 42 
                 G++ ++ G+ eeA e+Y   l+ +P + e+++n++l y+ +G
  KOO25363.1  63 GNEAVKAGRHEEAAEHYTSVLAAKPYDHEVLCNRALCYLHLG 104
                 899999*****************************9998776 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 1.6
      TPR_11  20 AlkldPdnaeayynLGlayyk 40 
                 A++l+Pd +  +y  G a++k
  KOO25363.1 126 AVQLKPDWPKGLYRFGCALMK 146
                 89********99999988776 PP

  == domain 3  score: 8.4 bits;  conditional E-value: 0.002
      TPR_11   3 ayyeqGkyeeAieaYkkAlkldPdnaea 30 
                 a+++  k++e+ +++ k ++l Pdn+ea
  KOO25363.1 143 ALMKTKKWKESAAVFTKVCELEPDNVEA 170
                 788899********************98 PP

  == domain 4  score: 8.5 bits;  conditional E-value: 0.0018
      TPR_11   1 GdayyeqGkyeeAieaYkkAl 21 
                 G + +  G+ye Ai+ Y +Al
  KOO25363.1 376 GSIAFRAGQYERAIALYTEAL 396
                 6677889************97 PP

  == domain 5  score: 8.5 bits;  conditional E-value: 0.0018
      TPR_11   4 yyeqGkyeeAieaYkkAlkldPdnaeayynLGlayykqG 42 
                 y ++G++e A+++  +A++  Pd+   yy +++a++++G
  KOO25363.1 417 YLKLGEFESALADGHAAVRCVPDFGKGYYRMAQALAQLG 455
                 889**********************************98 PP

>> TPR_16  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.0   0.0   1.8e-06    0.0017       2      49 ..      61     105 ..      60     106 .. 0.95
   2 ?    5.5   0.0     0.029        26       1      45 [.     138     179 ..     138     182 .. 0.92
   3 !   16.8   1.5   8.9e-06     0.008       3      66 ..     375     439 ..     374     439 .. 0.87
   4 ?    3.6  10.4      0.12   1.1e+02       1      55 [.     445     501 ..     445     514 .. 0.78

  Alignments for each domain:
  == domain 1  score: 19.0 bits;  conditional E-value: 1.8e-06
      TPR_16   2 alaraalragdyddAaaaleaalkrdpssPdaaeAllllgdaalrqgr 49 
                 +++++a++ag+ ++Aa+ ++ +l++    P ++e l ++++++l++g+
  KOO25363.1  61 DMGNEAVKAGRHEEAAEHYTSVLAAK---PYDHEVLCNRALCYLHLGE 105
                 689***********************...999**************97 PP

  == domain 2  score: 5.5 bits;  conditional E-value: 0.029
      TPR_16   1 lalaraalragdyddAaaaleaalkrdpssPdaaeAllllgdaal 45 
                 +  + a+++ +++ + aa+++ + ++    Pd++eA+  l +a+ 
  KOO25363.1 138 YRFGCALMKTKKWKESAAVFTKVCELE---PDNVEASGRLIQARE 179
                 56799**********************...*******99999875 PP

  == domain 3  score: 16.8 bits;  conditional E-value: 8.9e-06
      TPR_16   3 laraalragdyddAaaaleaalkrdpssPd.aaeAllllgdaalrqgrlaeAaalyraalraapd 66 
                 ++ +a+rag+y++A+a++++al      P+  +  l ++++++l++g+++ A+a   aa+r+ pd
  KOO25363.1 375 AGSIAFRAGQYERAIALYTEALPPTDAKPElKVNLLANRALCYLKLGEFESALADGHAAVRCVPD 439
                 6889**************8888555555666**********************999999988886 PP

  == domain 4  score: 3.6 bits;  conditional E-value: 0.12
      TPR_16   1 lalaraalragdyddAaaaleaalkrdpssPdaaeAllllgdaalrq...grlaeAaa 55 
                 + +a+a++++g+ ++A+ +l+ +l+  +    +a+A++ll+++  ++   +  a+Aaa
  KOO25363.1 445 YRMAQALAQLGRLREARLRLQDVLRVSKLGK-NADASNLLAELEGKAdftPAPAAAAA 501
                 679************************7666.*********99855544444444444 PP

>> TPR_8  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.4   0.0      0.12   1.1e+02       8      32 ..      63      87 ..      57      89 .. 0.86
   2 ?    0.4   0.0       1.1     1e+03       2      16 ..      91     105 ..      90     107 .. 0.90
   3 !    9.7   0.0    0.0012       1.1       3      34 .]     136     167 ..     134     167 .. 0.94
   4 !    8.1   0.2    0.0038       3.4       7      28 ..     375     396 ..     374     396 .. 0.93
   5 ?    6.3   0.1     0.014        13       3      22 ..     409     428 ..     407     429 .. 0.88
   6 ?    6.7   0.0     0.011       9.4       3      21 ..     443     461 ..     441     471 .. 0.90

  Alignments for each domain:
  == domain 1  score: 3.4 bits;  conditional E-value: 0.12
                HHHHHHTT-HHHHHHHHHHHHHHHH CS
       TPR_8  8 gsiylklgdyeeAkeyyekaleldp 32
                g+   k g++eeA e y  +l ++p
  KOO25363.1 63 GNEAVKAGRHEEAAEHYTSVLAAKP 87
                6777899**********99998888 PP

  == domain 2  score: 0.4 bits;  conditional E-value: 1.1
                 CHHHHHHHHHHHTT- CS
       TPR_8   2 eayynlgsiylklgd 16 
                 e+++n +++yl lg+
  KOO25363.1  91 EVLCNRALCYLHLGE 105
                 799**********96 PP

  == domain 3  score: 9.7 bits;  conditional E-value: 0.0012
                 HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH. CS
       TPR_8   3 ayynlgsiylklgdyeeAkeyyekaleldpdn 34 
                  +y+ g++++k+++ +e+ +++ k++el+pdn
  KOO25363.1 136 GLYRFGCALMKTKKWKESAAVFTKVCELEPDN 167
                 689***************************97 PP

  == domain 4  score: 8.1 bits;  conditional E-value: 0.0038
                 HHHHHHHTT-HHHHHHHHHHHH CS
       TPR_8   7 lgsiylklgdyeeAkeyyekal 28 
                  gsi +  g+ye A++ y +al
  KOO25363.1 375 AGSIAFRAGQYERAIALYTEAL 396
                 699****************997 PP

  == domain 5  score: 6.3 bits;  conditional E-value: 0.014
                 HHHHHHHHHHHTT-HHHHHH CS
       TPR_8   3 ayynlgsiylklgdyeeAke 22 
                 ++ n +++ylklg++e+A +
  KOO25363.1 409 LLANRALCYLKLGEFESALA 428
                 6889*************965 PP

  == domain 6  score: 6.7 bits;  conditional E-value: 0.011
                 HHHHHHHHHHHTT-HHHHH CS
       TPR_8   3 ayynlgsiylklgdyeeAk 21 
                  yy++++++ +lg++ eA 
  KOO25363.1 443 GYYRMAQALAQLGRLREAR 461
                 7***************996 PP

>> TPR_17  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.5   0.0    0.0015       1.4       2      29 ..      79     106 ..      78     110 .. 0.91
   2 ?   -2.3   0.0       8.7   7.8e+03       6      30 ..     127     151 ..     126     153 .. 0.82
   3 ?    0.3   0.0       1.3   1.2e+03       2      15 ..     157     170 ..     156     174 .. 0.90
   4 ?    6.1   0.1     0.018        16      10      33 ..     398     427 ..     384     428 .. 0.72
   5 !    9.8   0.0    0.0012       1.1       5      33 ..     433     461 ..     432     461 .. 0.94
   6 ?   -1.4   0.0       4.5   4.1e+03      11      23 ..     475     487 ..     474     491 .. 0.85

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 0.0015
      TPR_17   2 ylkaleldPnnadaynnLAelllknGdl 29 
                 y+ +l+  P + ++++n+A ++l++G++
  KOO25363.1  79 YTSVLAAKPYDHEVLCNRALCYLHLGET 106
                 77789999*****************986 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 8.7
      TPR_17   6 leldPnnadaynnLAelllknGdlm 30 
                 ++l P+ ++ ++  + +l k ++++
  KOO25363.1 127 VQLKPDWPKGLYRFGCALMKTKKWK 151
                 6788************999877665 PP

  == domain 3  score: 0.3 bits;  conditional E-value: 1.3
      TPR_17   2 ylkaleldPnnada 15 
                 ++k+ el+P+n++a
  KOO25363.1 157 FTKVCELEPDNVEA 170
                 7899*******987 PP

  == domain 4  score: 6.1 bits;  conditional E-value: 0.018
      TPR_17  10 Pnn......adaynnLAelllknGdlmtAr 33 
                 P++      ++++ n+A ++lk+G+++ A+
  KOO25363.1 398 PTDakpelkVNLLANRALCYLKLGEFESAL 427
                 555555556899*************99886 PP

  == domain 5  score: 9.8 bits;  conditional E-value: 0.0012
      TPR_17   5 aleldPnnadaynnLAelllknGdlmtAr 33 
                 a+++ P+  + y+ +A++l+++G+l++Ar
  KOO25363.1 433 AVRCVPDFGKGYYRMAQALAQLGRLREAR 461
                 78899**********************97 PP

  == domain 6  score: -1.4 bits;  conditional E-value: 4.5
      TPR_17  11 nnadaynnLAell 23 
                 +nada n+LAel 
  KOO25363.1 475 KNADASNLLAELE 487
                 69********996 PP

>> TPR_14  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.0   0.1    0.0066       5.9       7      40 ..      62      95 ..      56     101 .. 0.83
   2 ?    5.2   0.0      0.05        45      11      43 ..     144     176 ..     138     177 .. 0.90
   3 !    9.3   0.3    0.0026       2.3       6      29 ..     374     397 ..     370     411 .. 0.85
   4 ?   -0.2   0.0       2.8   2.5e+03       4      22 ..     410     428 ..     407     440 .. 0.70
   5 !   10.3   1.8    0.0012         1       4      43 ..     444     485 ..     442     486 .. 0.81

  Alignments for each domain:
  == domain 1  score: 8.0 bits;  conditional E-value: 0.0066
      TPR_14  7 laeallalGdpdeAiallrralalaPddaeawll 40
                ++     +G+++eA++++  +la+ P d e++  
  KOO25363.1 62 MGNEAVKAGRHEEAAEHYTSVLAAKPYDHEVLCN 95
                56666789******************99998754 PP

  == domain 2  score: 5.2 bits;  conditional E-value: 0.05
      TPR_14  11 llalGdpdeAiallrralalaPddaeawlllaq 43 
                 l+   +++e++a++ ++++l Pd+ ea  +l q
  KOO25363.1 144 LMKTKKWKESAAVFTKVCELEPDNVEASGRLIQ 176
                 67778899*******************999887 PP

  == domain 3  score: 9.3 bits;  conditional E-value: 0.0026
      TPR_14   6 alaeallalGdpdeAiallrrala 29 
                 +++++ +++G++++Aial+ +al 
  KOO25363.1 374 QAGSIAFRAGQYERAIALYTEALP 397
                 788999***************985 PP

  == domain 4  score: -0.2 bits;  conditional E-value: 2.8
      TPR_14   4 llalaeallalGdpdeAia 22 
                 l+ +a  +l lG+++ A+a
  KOO25363.1 410 LANRALCYLKLGEFESALA 428
                 5667777888888888876 PP

  == domain 5  score: 10.3 bits;  conditional E-value: 0.0012
      TPR_14   4 llalaeallalGdpdeAiallrrala..laPddaeawlllaq 43 
                 ++++a+al++lG+++eA+  l+++l+  +  ++a+a  lla+
  KOO25363.1 444 YYRMAQALAQLGRLREARLRLQDVLRvsKLGKNADASNLLAE 485
                 89*********************9984344577777666665 PP

>> TPR_12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.3   0.1   0.00073      0.66      22      74 ..      36      85 ..      32      87 .. 0.77
   2 ?   -0.4   0.0       1.6   1.5e+03       5      23 ..      92     110 ..      90     114 .. 0.75
   3 ?   -1.7   0.0       4.1   3.7e+03      16      32 ..     171     187 ..     169     193 .. 0.67
   4 !   16.7   0.9   7.4e-06    0.0066       9      66 ..     375     428 ..     368     436 .. 0.93
   5 !   12.0   3.6   0.00021      0.19       6      74 ..     410     470 ..     407     473 .. 0.79
   6 !    8.7   0.9    0.0024       2.1      48      74 ..     444     470 ..     439     486 .. 0.68

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.00073
      TPR_12 22 Alellekaleia.rrllGpdhpltattlrnLgrlyralgryeeAlelleealai 74
                A+e  ++a  ++ ++    +h  +a++ r++g    ++gr+eeA e+++ +la+
  KOO25363.1 36 AIEDINEAFKQIpKEQ--LEH--AAAVCRDMGNEAVKAGRHEEAAEHYTSVLAA 85
                5666666666663333..335..9999999*********************997 PP

  == domain 2  score: -0.4 bits;  conditional E-value: 1.6
      TPR_12   5 alnnlaavlrrlgrydeAl 23 
                 +l n+a+++++lg+    +
  KOO25363.1  92 VLCNRALCYLHLGETIGGE 110
                 5678999999999876655 PP

  == domain 3  score: -1.7 bits;  conditional E-value: 4.1
      TPR_12  16 lgrydeAlellekalei 32 
                  gr+ +A+e l+ +l++
  KOO25363.1 171 SGRLIQARETLQMVLNV 187
                 46777777777666655 PP

  == domain 4  score: 16.7 bits;  conditional E-value: 7.4e-06
      TPR_12   9 laavlrrlgrydeAlellekaleiarrllGpdhpltattlrnLgrlyralgryeeAle 66 
                  +++ +r+g+y+ A++l+ +al    +   p+    ++ l n + +y++lg++e Al+
  KOO25363.1 375 AGSIAFRAGQYERAIALYTEALPPTDAK--PEL--KVNLLANRALCYLKLGEFESALA 428
                 68999********************999..876..*********************96 PP

  == domain 5  score: 12.0 bits;  conditional E-value: 0.00021
      TPR_12   6 lnnlaavlrrlgrydeAlellekaleiarrllGpdhpltattlrnLgrlyralgryeeAlelleealai 74 
                 l n+a+++++lg+++ Al+  ++a++ +   +G+        ++ +++++ +lgr++eA+ +l+++l++
  KOO25363.1 410 LANRALCYLKLGEFESALADGHAAVRCV-PDFGKG-------YYRMAQALAQLGRLREARLRLQDVLRV 470
                 4499************************.556665.......567777777777777777777777775 PP

  == domain 6  score: 8.7 bits;  conditional E-value: 0.0024
      TPR_12  48 lrnLgrlyralgryeeAlelleealai 74 
                 ++ +++++ +lgr++eA+ +l+++l++
  KOO25363.1 444 YYRMAQALAQLGRLREARLRLQDVLRV 470
                 455666666666666666666666665 PP

>> ANAPC3  Anaphase-promoting complex, cyclosome, subunit 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.2   0.4    0.0065       5.9       3      79 ..      70     157 ..      68     160 .. 0.80
   2 !   18.5   0.3     2e-06    0.0018       3      79 ..     383     464 ..     379     467 .. 0.84

  Alignments for each domain:
  == domain 1  score: 7.2 bits;  conditional E-value: 0.0065
                 T-HHHHHHHHHHHH.HHH--HHHHHHHHHHHHHTT-..........HHHHHHHHHCT.SHHHC-HHHHHHHHHHHHHTT-HHHHHHHH CS
      ANAPC3   3 nnyknAiflaerllaaetespedayllAlclylngq..........ykrAyellrka.klnskslgcrylfAqcllkLkkyeeAiaaL 79 
                 +++++A  ++  +laa+++++e +   Alc++++g+          ++ A++ +  a +l++  ++ +y f+ +l k kk++e  a++
  KOO25363.1  70 GRHEEAAEHYTSVLAAKPYDHEVLCNRALCYLHLGEtiggermdeyFQLALHDTALAvQLKPDWPKGLYRFGCALMKTKKWKESAAVF 157
                 679999999999999********************97777777777777777777777777777777777777777777777777776 PP

  == domain 2  score: 18.5 bits;  conditional E-value: 2e-06
                 T-HHHHHHHHHHHH..HHH--HHHHHHH...HHHHHHTT-HHHHHHHHHCT.SHHHC-HHHHHHHHHHHHHTT-HHHHHHHH CS
      ANAPC3   3 nnyknAiflaerlla.aetespedayll...AlclylngqykrAyellrka.klnskslgcrylfAqcllkLkkyeeAiaaL 79 
                 ++y+ Ai l+  +l  ++++ +  + ll   Alc++++g++++A+   + a +  +   +  y +Aq+l +L+++ eA+  L
  KOO25363.1 383 GQYERAIALYTEALPpTDAKPELKVNLLanrALCYLKLGEFESALADGHAAvRCVPDFGKGYYRMAQALAQLGRLREARLRL 464
                 69************65666666666666669****************999966666666999****************8655 PP

>> Methyltransf_25  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.0         5   4.5e+03       1      59 [.     307     363 ..     307     386 .. 0.79
   2 !   21.1   0.1   4.3e-07   0.00039       2      76 ..     800     880 ..     799     897 .. 0.80

  Alignments for each domain:
  == domain 1  score: -1.6 bits;  conditional E-value: 5
                      EEEET-TTSHHHHHHHCTSTSSEEEEEESSHHHHHHHHHHHHHTTTTEEEEESBCCGBS CS
  Methyltransf_25   1 vLdlGcGtGrltlalakrlgkakvtgvDiseemleaareraeeeglnvefvqgdaedlp 59 
                      vL lG   G l l   ++ g+ kv+ +++   + + a++ ++++   + f++   ++lp
       KOO25363.1 307 VLHLGSAMGLLPLLSMEA-GANKVYVCEPHGFLAKLAHAAVQRH-TLIAFEKDHWSRLP 363
                      788999999888888888.6899999999988888888888544.46777776666666 PP

  == domain 2  score: 21.1 bits;  conditional E-value: 4.3e-07
                      EEET-TTSHHHHHHHCTST..SSEEEEEESSHHHHHHHHHHHHHTTT..TEEEEESBCCGBSSSTT...TEEEEEEESTGGG CS
  Methyltransf_25   2 LdlGcGtGrltlalakrlg..kakvtgvDiseemleaareraeeegl..nvefvqgdaedlpfedg...sfDlvvssgalhh 76 
                      L +G+G G+l++ +a++ +  + +v++++ s++++  a++ a+++++  +++f+q+da++l  +++   + D+ ++  ++ h
       KOO25363.1 800 LHVGAGIGTLSIVAAAARPdcSDHVVACEKSADLIGVAEACARHNEVsaRISFLQKDARNLRAHEElsrKADILLL-ECIDH 880
                      789******9999988863479*****************9999998899***********9864433227777666.45555 PP

>> TPR_7  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.3   0.0     0.013        12      11      33 ..      68      88 ..      59      91 .. 0.81
   2 ?   -2.7   0.1       9.3   8.3e+03       2      14 ..      93     105 ..      92     106 .. 0.85
   3 !   13.0   0.0     9e-05     0.081       6      29 ..     376     397 ..     373     404 .. 0.83
   4 ?    3.2   0.2      0.12   1.1e+02       2      19 ..     410     427 ..     409     428 .. 0.90
   5 ?    1.3   0.3      0.49   4.4e+02       2      24 ..     444     466 ..     444     476 .. 0.77

  Alignments for each domain:
  == domain 1  score: 6.3 bits;  conditional E-value: 0.013
       TPR_7 11 rlGdyeeAielyeqsLaltkdpe 33
                + G++eeA+e+y+   +l+  p+
  KOO25363.1 68 KAGRHEEAAEHYTS--VLAAKPY 88
                689***********..5555554 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 9.3
       TPR_7   2 LlnLarlysrlGd 14 
                 L+n a +y  lG+
  KOO25363.1  93 LCNRALCYLHLGE 105
                 8999999999998 PP

  == domain 3  score: 13.0 bits;  conditional E-value: 9e-05
       TPR_7   6 arlysrlGdyeeAielyeqsLalt 29 
                 +++ +r G+ye+Ai ly++  al 
  KOO25363.1 376 GSIAFRAGQYERAIALYTE--ALP 397
                 89999**************..765 PP

  == domain 4  score: 3.2 bits;  conditional E-value: 0.12
       TPR_7   2 LlnLarlysrlGdyeeAi 19 
                 L n a +y +lG++e A+
  KOO25363.1 410 LANRALCYLKLGEFESAL 427
                 7899***********997 PP

  == domain 5  score: 1.3 bits;  conditional E-value: 0.49
       TPR_7   2 LlnLarlysrlGdyeeAielyeq 24 
                 ++++a++  +lG+ +eA   ++ 
  KOO25363.1 444 YYRMAQALAQLGRLREARLRLQD 466
                 6899**********999766666 PP

>> TPR_9  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.6   0.0    0.0023         2       7      45 ..      68     106 ..      64     111 .. 0.91
   2 ?    1.5   0.0      0.36   3.3e+02      11      65 ..     116     170 ..     112     181 .. 0.89
   3 ?   -0.6   0.2       1.7   1.5e+03      49      72 ..     272     295 ..     266     296 .. 0.88
   4 !    7.7   0.3    0.0042       3.8      29      51 ..     407     429 ..     375     439 .. 0.74
   5 ?    4.3   0.7     0.051        46      35      65 ..     447     479 ..     442     487 .. 0.76

  Alignments for each domain:
  == domain 1  score: 8.6 bits;  conditional E-value: 0.0023
       TPR_9   7 reedweralavverllllaPddpeerrdRGlllaqlGcl 45 
                  + ++e+a + + ++l+ +P d+e +  R+l++ +lG +
  KOO25363.1  68 KAGRHEEAAEHYTSVLAAKPYDHEVLCNRALCYLHLGET 106
                 678999*******************************86 PP

  == domain 2  score: 1.5 bits;  conditional E-value: 0.36
       TPR_9  11 weralavverllllaPddpeerrdRGlllaqlGclsaAladLeaylalapdapda 65 
                 ++ al    + ++l+Pd p  ++  G +l++   +++ +a +    +l+pd+ +a
  KOO25363.1 116 FQLALHDTALAVQLKPDWPKGLYRFGCALMKTKKWKESAAVFTKVCELEPDNVEA 170
                 67788889999*****************************999999999987655 PP

  == domain 3  score: -0.6 bits;  conditional E-value: 1.7
       TPR_9  49 ladLeaylalapdapdaeairaqL 72 
                 + +Lea l+ a  ++ ae ir+++
  KOO25363.1 272 RSELEALLDSARTDAYAEVIRQAV 295
                 679******************976 PP

  == domain 4  score: 7.7 bits;  conditional E-value: 0.0042
       TPR_9  29 peerrdRGlllaqlGclsaAlad 51 
                 + ++  R+l++ +lG ++ Alad
  KOO25363.1 407 VNLLANRALCYLKLGEFESALAD 429
                 567889***************99 PP

  == domain 5  score: 4.3 bits;  conditional E-value: 0.051
       TPR_9  35 RGlllaqlGclsaAladLeaylalap..dapda 65 
                  +++laqlG+l++A+  L+  l+++   +++da
  KOO25363.1 447 MAQALAQLGRLREARLRLQDVLRVSKlgKNADA 479
                 589****************99977664444444 PP

>> MTS  Methyltransferase small domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.0       3.7   3.4e+03     120     139 ..     289     308 ..     281     351 .. 0.58
   2 !   15.9   0.1   7.7e-06    0.0069      35      90 ..     799     858 ..     781     872 .. 0.85

  Alignments for each domain:
  == domain 1  score: -2.6 bits;  conditional E-value: 3.7
                 HHHHHHHHHEEEEEEEEEEE CS
         MTS 120 eliaeAkeaLkegGeLliVa 139
                 e+i++A   L + G+  +V 
  KOO25363.1 289 EVIRQAVPLLVPRGQSGVVL 308
                 55555555555555544443 PP

  == domain 2  score: 15.9 bits;  conditional E-value: 7.7e-06
                 EEEET-TTSHHHHHHHHHTTC.E..EEEEESBHHHHHHHHHHHHHTTGC..EEEEE-STT CS
         MTS  35 vlDlGcGaGvlgaalakespeae..vtlvdvdarAlesakenleankle..vevvasdvl 90 
                  l +G+G+G l++++a++ p+ +  v++++++a  + +a++ +++n+++  ++++++d+ 
  KOO25363.1 799 TLHVGAGIGTLSIVAAAARPDCSdhVVACEKSADLIGVAEACARHNEVSarISFLQKDAR 858
                 5789****************98777***********************977888888875 PP

>> BTAD  Bacterial transcriptional activator domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   0.3   5.2e-05     0.046      48     111 ..      43     105 ..      15     111 .. 0.76
   2 ?    6.6   2.2     0.011       9.5      58     119 ..     403     464 ..     367     486 .. 0.85

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 5.2e-05
                 TTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT- CS
        BTAD  48 ewleaererleelrlealealaeaelrlGraeealaelealvaehPlrErlhrqlmrAlarsGr 111
                  + +   e+l e + ++++++ ++ ++ Gr+eea++ +++ +a++P++ +  +   +++ ++G+
  KOO25363.1  43 AFKQIPKEQL-EHAAAVCRDMGNEAVKAGRHEEAAEHYTSVLAAKPYDHEVLCNRALCYLHLGE 105
                 4444444444.5567899999999******************************9999999986 PP

  == domain 2  score: 6.6 bits;  conditional E-value: 0.011
                 HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHH CS
        BTAD  58 eelrlealealaeaelrlGraeealaelealvaehPlrErlhrqlmrAlarsGrqaeALevY 119
                  el++  l+ +a   l+lG+ e ala+ +a+v++ P   + +  + +Ala++Gr  eA  + 
  KOO25363.1 403 PELKVNLLANRALCYLKLGEFESALADGHAAVRCVPDFGKGYYRMAQALAQLGRLREARLRL 464
                 577888889999999***************************************99996555 PP

>> TPR_6  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.4   0.0       2.6   2.4e+03      12      27 ..      68      83 ..      56      85 .. 0.77
   2 ?   -2.0   0.0       8.6   7.7e+03       5      16 ..      95     106 ..      92     117 .. 0.83
   3 ?    2.4   0.0      0.32   2.9e+02       3      32 ..     137     166 ..     135     167 .. 0.92
   4 ?   -0.2   0.0       2.2     2e+03      15      28 ..     173     186 ..     169     186 .. 0.81
   5 ?    4.2   0.3     0.091        82       7      25 ..     376     394 ..     373     396 .. 0.80
   6 ?    2.8   0.1      0.25   2.2e+02       5      20 ..     412     427 ..     409     429 .. 0.87
   7 ?    7.3   1.6    0.0094       8.4       3      28 ..     444     469 ..     442     470 .. 0.93

  Alignments for each domain:
  == domain 1  score: -0.4 bits;  conditional E-value: 2.6
                HHHHHHHHHHHHHHHH CS
       TPR_6 12 klgdtdkAlealerli 27
                k+g++++A e + +++
  KOO25363.1 68 KAGRHEEAAEHYTSVL 83
                459********99987 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 8.6
                 HHHHHHHHHHHH CS
       TPR_6   5 klalsyrklgdt 16 
                 ++al+y+ lg+t
  KOO25363.1  95 NRALCYLHLGET 106
                 579****98776 PP

  == domain 3  score: 2.4 bits;  conditional E-value: 0.32
                 HHHHHHHHHHHHHHHHHHHHHHHHHHH-TT CS
       TPR_6   3 lyklalsyrklgdtdkAlealerlikeYPd 32 
                 ly+ + ++ k++++ ++ + + ++ +  Pd
  KOO25363.1 137 LYRFGCALMKTKKWKESAAVFTKVCELEPD 166
                 899999****99************999998 PP

  == domain 4  score: -0.2 bits;  conditional E-value: 2.2
                 HHHHHHHHHHHHHH CS
       TPR_6  15 dtdkAlealerlik 28 
                 +  +A+e+l+ +++
  KOO25363.1 173 RLIQARETLQMVLN 186
                 6679******9985 PP

  == domain 5  score: 4.2 bits;  conditional E-value: 0.091
                 HHHHHHHHHHHHHHHHHHH CS
       TPR_6   7 alsyrklgdtdkAlealer 25 
                 +   +++g++++A++++ +
  KOO25363.1 376 GSIAFRAGQYERAIALYTE 394
                 56678888********987 PP

  == domain 6  score: 2.8 bits;  conditional E-value: 0.25
                 HHHHHHHHHHHHHHHH CS
       TPR_6   5 klalsyrklgdtdkAl 20 
                 ++al+y+klg+ + Al
  KOO25363.1 412 NRALCYLKLGEFESAL 427
                 78******99**9997 PP

  == domain 7  score: 7.3 bits;  conditional E-value: 0.0094
                 HHHHHHHHHHHHHHHHHHHHHHHHHH CS
       TPR_6   3 lyklalsyrklgdtdkAlealerlik 28 
                 +y++a+++ +lg+ ++A+  l+++++
  KOO25363.1 444 YYRMAQALAQLGRLREARLRLQDVLR 469
                 8*********9***********9985 PP

>> FAT  FAT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.8   0.0       6.4   5.7e+03     245     287 ..      97     135 ..      49     141 .. 0.70
   2 ?    5.2   0.3     0.011        10     160     221 ..     171     235 ..     168     268 .. 0.82
   3 ?    5.1   0.0     0.012        11     244     286 ..     413     455 ..     379     527 .. 0.82

  Alignments for each domain:
  == domain 1  score: -3.8 bits;  conditional E-value: 6.4
                 HHCCCTCCCCCCCCCCCT.S...-SSCCHHHHCCHHCTCCCHS CS
         FAT 245 arcylkkGewqealqkldwseekieeilqsysaateidpswyk 287
                 a cyl +Ge    ++  ++++e ++ +l+  ++a+++ p+w k
  KOO25363.1  97 ALCYLHLGE---TIGG-ERMDEYFQLALHDTALAVQLKPDWPK 135
                 447777777...3444.45566677777777777777777776 PP

  == domain 2  score: 5.2 bits;  conditional E-value: 0.011
                 HHHCCSTTHHCCCCCHCTT........TT.TSSCCCHHHHHHHCCHHHHHSSCCHHHHCCTSSCC CS
         FAT 160 sgrlslAekaLkelleedp...eewlprappevvyaylKylwssgeqkealqkLreftsellekk 221
                 sgrl +A ++L+++l ++    ++w ++  pe +  + + + ++ + +ea+  Lre++ +   + 
  KOO25363.1 171 SGRLIQARETLQMVLNVERvndPHWMHKPAPEKTELQKRAEAAQAKNDEAMTGLREELGKSEFDF 235
                 89************999999999*********************************998666654 PP

  == domain 3  score: 5.1 bits;  conditional E-value: 0.012
                 HHHCCCTCCCCCCCCCCCT.S...-SSCCHHHHCCHHCTCCCH CS
         FAT 244 larcylkkGewqealqkldwseekieeilqsysaateidpswy 286
                  a cylk+Ge+ +al +++ +++++ +  + y++ ++   ++ 
  KOO25363.1 413 RALCYLKLGEFESALADGHAAVRCVPDFGKGYYRMAQALAQLG 455
                 467************************9999998888776665 PP

>> Methyltransf_12  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.1   0.0       1.8   1.6e+03      29      79 ..      33     101 ..      29     117 .. 0.80
   2 ?   10.3   0.1    0.0011      0.94       1      85 [.     800     897 ..     800     910 .. 0.67

  Alignments for each domain:
  == domain 1  score: -0.1 bits;  conditional E-value: 1.8
  Methyltransf_12  29 spsaiedakeklakrennnnnnvelealdlldldgg.................ssfDl.vvasnvlhhl 79 
                      s+ aied  e ++++ +++ ++     +d ++++ +                 + +D  v+++ +l++l
       KOO25363.1  33 SEGAIEDINEAFKQIPKEQLEHAAAVCRDMGNEAVKagrheeaaehytsvlaaKPYDHeVLCNRALCYL 101
                      788888889999999988888888888888877777888888888888888888888878888888887 PP

  == domain 2  score: 10.3 bits;  conditional E-value: 0.0011
  Methyltransf_12   1 LeiGcGtGsllrallekl..pdieytgvDispsai..edakeklakrennnnnnvelealdlldldgg............ssfDlvvas.nvlh 77 
                      L++G+G G+l+ + +++      ++++++ s++ i  + a ++    +n+  +++ + ++d+ +l               +  D  ++  + lh
       KOO25363.1 800 LHVGAGIGTLSIVAAAARpdCSDHVVACEKSADLIgvAEACAR----HNEVSARISFLQKDARNLRAHeelsrkadilllECIDHTLIGdGILH 889
                      78****************4444578899999999955344444....44444444444444444433344575666777777777777777777 PP

  Methyltransf_12  78 hlkdirev 85 
                      +++++r+ 
       KOO25363.1 890 YVQHLRQG 897
                      77777765 PP

>> Methyltransf_24  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.3   0.1       2.5   2.2e+03      43      78 ..     202     241 ..     158     305 .. 0.75
   2 ?    9.6   0.2     0.002       1.8       3      76 ..     802     876 ..     800     906 .. 0.73
   3 ?   -0.1   0.0       2.1   1.9e+03      54     101 ..     945     989 ..     902     991 .. 0.70

  Alignments for each domain:
  == domain 1  score: -0.3 bits;  conditional E-value: 2.5
  Methyltransf_24  43 reaglddrvrlikadseealasla....agsiDllfiDgg 78 
                      ++++l++r++  +a+ +ea+++l+    ++++D++++   
       KOO25363.1 202 EKTELQKRAEAAQAKNDEAMTGLReelgKSEFDFALLERT 241
                      4578888888888888888888887777888888776554 PP

  == domain 2  score: 9.6 bits;  conditional E-value: 0.002
  Methyltransf_24   3 iGvysGvstlwllralrrnga.grlvavdhdpg.aeeaaalareaglddrvrlikadseealasla.agsiDllfiD 76 
                      +G  +G  tl +++a+ r +   ++va+++ ++    a+a ar +++++r+ ++++d+++++a+ + +++ D+l++ 
       KOO25363.1 802 VG--AGIGTLSIVAAAARPDCsDHVVACEKSADlIGVAEACARHNEVSARISFLQKDARNLRAHEElSRKADILLLE 876
                      67..66666666555544333369******99766668899999**************9988754455889988754 PP

  == domain 3  score: -0.1 bits;  conditional E-value: 2.1
  Methyltransf_24  54 ikadseealaslaagsiDllfiDgghaaeavledleallprlapggvv 101
                      + ++ e+a+ +++ + +D++++D+    ++v + +e l+ +++++g+v
       KOO25363.1 945 HLERKEDAYVQMS-DVFDIFVFDFA--DARVEQQIEELEVICSRDGIV 989
                      3444466666777.77999999986..777888888888888888887 PP

>> TPR_10  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.1   0.1      0.44   3.9e+02       8      30 ..      62      84 ..      56      86 .. 0.76
   2 ?    2.2   0.0       0.2   1.8e+02      14      29 ..     381     396 ..     376     399 .. 0.67
   3 ?    0.2   0.2      0.85   7.6e+02       7      31 ..     412     436 ..     408     436 .. 0.80
   4 ?    5.3   1.2     0.021        19       8      32 ..     447     471 ..     444     473 .. 0.89

  Alignments for each domain:
  == domain 1  score: 1.1 bits;  conditional E-value: 0.44
      TPR_10  8 LanalrqrgrydeAealleeala 30
                ++n   + gr++eA +++  +la
  KOO25363.1 62 MGNEAVKAGRHEEAAEHYTSVLA 84
                56666678********9987776 PP

  == domain 2  score: 2.2 bits;  conditional E-value: 0.2
      TPR_10  14 qrgrydeAealleeal 29 
                 + g+y++A al+ eal
  KOO25363.1 381 RAGQYERAIALYTEAL 396
                 5667777777776665 PP

  == domain 3  score: 0.2 bits;  conditional E-value: 0.85
      TPR_10   7 NLanalrqrgrydeAealleealai 31 
                 N a  + ++g+++ A+a+ + a+++
  KOO25363.1 412 NRALCYLKLGEFESALADGHAAVRC 436
                 666668999*******999998875 PP

  == domain 4  score: 5.3 bits;  conditional E-value: 0.021
      TPR_10   8 LanalrqrgrydeAealleealair 32 
                 +a al q+gr+ eA+  l+++l++ 
  KOO25363.1 447 MAQALAQLGRLREARLRLQDVLRVS 471
                 799**************99999875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1137 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       520  (0.0290033); expected 358.6 (0.02)
Passed bias filter:                      439  (0.0244855); expected 358.6 (0.02)
Passed Vit filter:                        54  (0.00301188); expected 17.9 (0.001)
Passed Fwd filter:                        21  (0.00117129); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              20  [number of targets reported over threshold]
# CPU time: 0.78u 0.30s 00:00:01.08 Elapsed: 00:00:00.47
# Mc/sec: 7309.27
//
Query:       KOO25364.1  [L=287]
Description: choloylglycine hydrolase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.4e-21   75.3   0.0      5e-14   52.7   0.0    2.2  2  CBAH      Linear amide C-N hydrolases, choloylglycine hydrola


Domain annotation for each model (and alignments):
>> CBAH  Linear amide C-N hydrolases, choloylglycine hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.7   0.0   2.8e-18     5e-14      74     197 ..       2     122 ..       1     130 [. 0.80
   2 !   20.8   0.0   1.4e-08   0.00025     207     238 ..     153     184 ..     136     264 .. 0.68

  Alignments for each domain:
  == domain 1  score: 52.7 bits;  conditional E-value: 2.8e-18
                 S-EEEEEE-TTT---BSS--TTSEEEEGGGHHHHHHHH-SSHHHHHHHHTTEEEB---CTCCSS---EEEEEE-TTS-EEEEEEETTEEEEEESS.... CS
        CBAH  74 GlsiaglylaeyaeykkepkedkvniaagelirwvlenftsveevkeklkklkivnealdilgakaplHwiisDasgesivieerkegLkvydne.... 168
                 Gl+i+g  l   ++ + +p      +    + +w l+  ++v ev  +l k+++v  +    g++    w + D +g siv+e++k++L v++n+    
  KOO25364.1   2 GLGINGHALDLAVFQTADPS--MPTLCKEDFSSWCLGLHATVAEVATELAKVRLVGGK----GGQ----WGLHDSTGASIVVEYVKGELRVHNNTvgak 90 
                 77777777744444444444..5667788899**********************9876....455....7888*******************9972333 PP

                 ...SSEE-SSS-HHHHHHHHGGGTT--SS--- CS
        CBAH 169 ...vgVltnsPkfdwhltnlerykglrpkqve 197
                    +gV+tn+P++dw+l+n +++ +l+p+  +
  KOO25364.1  91 negIGVMTNDPTWDWQLQNVNNFAALQPSWYN 122
                 33357*********************998655 PP

  == domain 2  score: 20.8 bits;  conditional E-value: 1.4e-08
                 E-SSSTGGGTT-B-S-SHHHHHHHHHHHHHHC CS
        CBAH 207 tafgqgtgqlgLPGdvtpasRFvraaylkkal 238
                 ++ g++   lgLPGd +p +RF+r+ yl+ + 
  KOO25364.1 153 EPIGHAYNLLGLPGDGSPPARFIRVFYLRGYA 184
                 57899999*******************99754 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (287 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       261  (0.0145574); expected 358.6 (0.02)
Passed bias filter:                      237  (0.0132188); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.25s 00:00:00.68 Elapsed: 00:00:00.41
# Mc/sec: 2090.00
//
Query:       KOO25365.1  [L=517]
Description: peroxisomal biogenesis factor 6 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      2e-42  144.8   0.0    4.9e-42  143.5   0.0    1.7  1  AAA              ATPase family associated with various cellul
    1.3e-06   28.9   0.7    0.00061   20.2   0.1    3.0  2  AAA_16           AAA ATPase domain
    4.3e-05   23.3   0.0    9.8e-05   22.1   0.0    1.6  1  RuvB_N           Holliday junction DNA helicase RuvB P-loop d
    0.00035   20.8   0.1     0.0097   16.2   0.1    2.4  2  AAA_22           AAA domain
     0.0014   18.8   0.0     0.0034   17.6   0.0    1.7  1  AAA_33           AAA domain
     0.0017   18.4   0.1     0.0073   16.3   0.1    2.0  1  AAA_5            AAA domain (dynein-related subfamily)
     0.0022   17.4   0.0      0.004   16.5   0.0    1.3  1  ATPase           KaiC
     0.0023   17.2   0.0     0.0033   16.7   0.0    1.2  1  TIP49            TIP49 P-loop domain
      0.004   16.9   0.1     0.0079   15.9   0.1    1.4  1  IstB_IS21        IstB-like ATP binding protein
     0.0053   16.9   0.0      0.012   15.8   0.0    1.5  1  AAA_2            AAA domain (Cdc48 subfamily)
  ------ inclusion threshold ------
      0.012   15.0   0.5      0.035   13.5   0.5    1.7  1  Mg_chelatase     Magnesium chelatase, subunit ChlI
      0.025   14.1   0.0      0.042   13.4   0.0    1.3  1  AAA_7            P-loop containing dynein motor region
      0.037   14.0   0.0      0.068   13.2   0.0    1.4  1  TsaE             Threonylcarbamoyl adenosine biosynthesis pro
      0.043   13.5   0.1       0.27   10.9   0.0    2.2  3  Sigma54_activat  Sigma-54 interaction domain
      0.055   13.2   0.0      0.094   12.5   0.0    1.3  1  AAA_11           AAA domain
      0.072   12.5   0.1       0.13   11.7   0.1    1.3  1  PhoH             PhoH-like protein
      0.092   13.1   0.0       0.15   12.4   0.0    1.4  1  RNA_helicase     RNA helicase
      0.094   12.6   0.0       0.17   11.8   0.0    1.4  1  AAA_3            ATPase family associated with various cellul
       0.11   12.4   0.1       0.27   11.1   0.1    1.6  1  NACHT            NACHT domain
       0.13   12.8   0.0       0.22   12.0   0.0    1.4  1  AAA_18           AAA domain
       0.18   11.9   0.0       0.27   11.3   0.0    1.2  1  AAA_14           AAA domain
       0.18   11.0   0.0       0.24   10.6   0.0    1.2  1  DUF2075          Uncharacterized conserved protein (DUF2075)
       0.19   10.8   0.0       0.29   10.2   0.0    1.2  1  Parvo_NS1        Parvovirus non-structural protein NS1
       0.31   10.2   0.0       0.52    9.4   0.0    1.3  1  NB-ARC           NB-ARC domain
       0.32   10.6   3.3       0.24   10.9   0.4    2.4  2  AAA_25           AAA domain


Domain annotation for each model (and alignments):
>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  143.5   0.0   6.8e-45   4.9e-42       1     131 [.     257     393 ..     257     394 .. 0.97

  Alignments for each domain:
  == domain 1  score: 143.5 bits;  conditional E-value: 6.8e-45
                 EEEESSTTSSHHHHHHHHHHHHTHEEEEEETTTCSSSSTTHHHHHHHHHHHHHHHTSTSEEEEEETGGGHHHHH..TTCCCHHHHHHHHHHHHHHHHTT CS
         AAA   1 vllyGppGtGKTllakavakelgvefleisgsellskyvgesekkirelfkeakekakpsilfiDEidalaksr..sgseseeeervvnqLlteldgvk 97 
                 vll+GppGtGKTllakava+e++  fl+++g+ells yvgese+++relf++a+  a p+++f+DEidala+sr  +g++ ++ +rvv+qL++eld v 
  KOO25365.1 257 VLLHGPPGTGKTLLAKAVATECQLAFLSVKGPELLSPYVGESERQVRELFARARDAA-PCVIFFDEIDALAPSRgaTGDAGGVMDRVVSQLMAELDSVH 354
                 79******************************************************9.*****************9999******************** PP

                 TS....SSTEEEEEEESSGGGSTHHHHS.TTSSEEEETT CS
         AAA  98 kk....eskvivigatnrpdkldpallr.gRfdrkieie 131
                 +       +++v+gatnrpd ld  llr gRf++ ++i+
  KOO25365.1 355 SAghagAPPLFVLGATNRPDLLDTSLLRpGRFEKLVYIG 393
                 **9999788*************************99986 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.2   0.1   8.5e-07   0.00061      23      50 ..     254     280 ..     231     297 .. 0.78
   2 ?    5.5   0.0     0.027        20     123     149 ..     302     327 ..     297     367 .. 0.77

  Alignments for each domain:
  == domain 1  score: 20.2 bits;  conditional E-value: 8.5e-07
      AAA_16  23 rpelvllsGesGvGKsslvrellralek 50 
                 r + vll+G++G+GK+ l+++++++ + 
  KOO25365.1 254 R-SGVLLHGPPGTGKTLLAKAVATECQL 280
                 2.89******************987654 PP

  == domain 2  score: 5.5 bits;  conditional E-value: 0.027
      AAA_16 123 lkrllallsrderplvlvlDdlqwade 149
                 +++l+a+++  + p v+++D+++ + +
  KOO25365.1 302 VRELFARARD-AAPCVIFFDEIDALAP 327
                 6778889998.999*********6554 PP

>> RuvB_N  Holliday junction DNA helicase RuvB P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.1   0.0   1.4e-07   9.8e-05      35      99 ..     256     328 ..     245     388 .. 0.69

  Alignments for each domain:
  == domain 1  score: 22.1 bits;  conditional E-value: 1.4e-07
      RuvB_N  35 hvllyGpPGlGkttlakiiakelgvklkitsgPvl......ekagdlaalltnleekd..vlfideihrlsra 99 
                  vll+GpPG Gkt lak +a+e +  + +  gP l      e ++++  l+++ ++    v+f dei  l+++
  KOO25365.1 256 GVLLHGPPGTGKTLLAKAVATECQLAFLSVKGPELlspyvgESERQVRELFARARDAApcVIFFDEIDALAPS 328
                 59****************************9998733333344556666666655443347888888877665 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.1   1.3e-05    0.0097       4      28 ..     253     277 ..     251     295 .. 0.85
   2 ?    1.7   0.0      0.39   2.8e+02      77     105 ..     301     328 ..     289     352 .. 0.71

  Alignments for each domain:
  == domain 1  score: 16.2 bits;  conditional E-value: 1.3e-05
      AAA_22   4 tagilvvtGesGtGKTtllrrlleq 28 
                 +++ ++++G++GtGKT+l++ ++ +
  KOO25365.1 253 QRSGVLLHGPPGTGKTLLAKAVATE 277
                 567789**************99876 PP

  == domain 2  score: 1.7 bits;  conditional E-value: 0.39
      AAA_22  77 ellealeqalrarav..ielliiDEaqhlr.s 105
                 +++e++++a     +  + ++  DE++ l  s
  KOO25365.1 301 QVRELFARAR----DaaPCVIFFDEIDALApS 328
                 3334444443....34557*********9653 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.6   0.0   4.7e-06    0.0034       2      39 ..     257     296 ..     257     327 .. 0.77

  Alignments for each domain:
  == domain 1  score: 17.6 bits;  conditional E-value: 4.7e-06
      AAA_33   2 vllvGlpGsGKstlaerllkklg..avllssdtlrrrlfg 39 
                 vll+G+pG+GK+ la+ ++ + +  +  +  ++l++ ++g
  KOO25365.1 257 VLLHGPPGTGKTLLAKAVATECQlaFLSVKGPELLSPYVG 296
                 799****************999975555777777666665 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.1     1e-05    0.0073       1      77 [.     256     325 ..     256     332 .. 0.73

  Alignments for each domain:
  == domain 1  score: 16.3 bits;  conditional E-value: 1e-05
                 EEEEE--SSSSHHHHHHHGGGGBS--EEEEE--TT--HHHHH--B--.........--------..G-SEEEEESGGG- CS
       AAA_5   1 dvlLvGppGtgKselaerlaaalnreveyvqltrdtteedlkgrreikngttslvdsplvraar..egeilvlDEvera 77 
                 +vlL GppGtgK+ la+ +a   +  ++ v +++      l+ ++    g+ +++  +l   ar   ++++++DE++ +
  KOO25365.1 256 GVLLHGPPGTGKTLLAKAVATECQLAFLSVKGPE------LLSPYV---GESERQVRELFARARdaAPCVIFFDEIDAL 325
                 59****************9998888888888877......444444...444444477776677667777777777765 PP

>> ATPase  KaiC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.0   5.6e-06     0.004      11      37 ..     246     272 ..     244     279 .. 0.91

  Alignments for each domain:
  == domain 1  score: 16.5 bits;  conditional E-value: 5.6e-06
      ATPase  11 ilkgGipegrvvlitGepGtGKtifal 37 
                 ++ gG+ +++ vl+ G pGtGKt++a+
  KOO25365.1 246 LFAGGVRQRSGVLLHGPPGTGKTLLAK 272
                 689**********************97 PP

>> TIP49  TIP49 P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.0   4.6e-06    0.0033      28      97 ..     225     299 ..     198     310 .. 0.73

  Alignments for each domain:
  == domain 1  score: 16.7 bits;  conditional E-value: 4.6e-06
                 XXXXXXXXXXXXXXX.XXX.XXXXX.....XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
       TIP49  28 Gqkkareaagvivel.ike.kklaG.....ravLlaGpsgtGktalaiaiskelgedvpfvalsgsevyslevkkte 97 
                 Gq +a++a    v+l +++   +aG      +vLl Gp+gtGkt la a++ e    + f +++g e+ s  v  +e
  KOO25365.1 225 GQAEAKRAILETVQLpLRHpALFAGgvrqrSGVLLHGPPGTGKTLLAKAVATECQ--LAFLSVKGPELLSPYVGESE 299
                 67777777665555532331233443333247********************986..99*******99998877776 PP

>> IstB_IS21  IstB-like ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.1   1.1e-05    0.0079      44      70 ..     251     277 ..     246     286 .. 0.88

  Alignments for each domain:
  == domain 1  score: 15.9 bits;  conditional E-value: 1.1e-05
   IstB_IS21  44 iekkenivllGpsGvGKshlaialgve 70 
                 ++++ +++l Gp+G+GK+ la a+++e
  KOO25365.1 251 VRQRSGVLLHGPPGTGKTLLAKAVATE 277
                 678899*****************9987 PP

>> AAA_2  AAA domain (Cdc48 subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.0   1.6e-05     0.012       4      90 ..     255     335 ..     252     348 .. 0.81

  Alignments for each domain:
  == domain 1  score: 15.8 bits;  conditional E-value: 1.6e-05
                 --EEEE--TTSSHHHHHHHHHHHTT-....-EEEEEGGG-------THHHHHHHHHTTT-HHHHTTS..EEEEETGGG----------- CS
       AAA_2   4 isilllgptgvGktelakalaellfvkkekkliradaselleeeevehlvsrligappgyvgaeegG..ivllDEidKihpkessgadv 90 
                 + +ll gp g+Gkt+laka+a   ++    ++  +   ell       + +++ + ++   +a +    ++++DEid  +p++ ++ d 
  KOO25365.1 255 SGVLLHGPPGTGKTLLAKAVATECQL----AFLSVKGPELLS----PYVGESERQVRELFARARDAApcVIFFDEIDALAPSRGATGDA 335
                 568999******************98....9**********9....66666666777777777766677************76666554 PP

>> Mg_chelatase  Magnesium chelatase, subunit ChlI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.5   4.9e-05     0.035      24      43 ..     256     275 ..     220     279 .. 0.81

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 4.9e-05
  Mg_chelatase  24 nlllvGppGsGKtmlakrlp 43 
                    +ll GppG+GKt+lak+++
    KOO25365.1 256 GVLLHGPPGTGKTLLAKAVA 275
                   489*************9975 PP

>> AAA_7  P-loop containing dynein motor region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.0   5.8e-05     0.042      21      57 ..     242     278 ..     225     286 .. 0.80

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 5.8e-05
       AAA_7  21 rysyllelllknkkpvllvGptGtGKtviikdllkkl 57 
                 r   l+   ++++  vll Gp GtGKt+++k + +++
  KOO25365.1 242 RHPALFAGGVRQRSGVLLHGPPGTGKTLLAKAVATEC 278
                 666777778999*****************99977665 PP

>> TsaE  Threonylcarbamoyl adenosine biosynthesis protein TsaE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.0   9.5e-05     0.068      20      51 ..     255     288 ..     228     302 .. 0.81

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 9.5e-05
                 EEEEEEESTTSSHHHHHHHHHHHTT--..----T CS
        TsaE  20 dvilLeGdLGaGKTtlvrglakalgve..evkSP 51 
                 + +lL+G+ G+GKT l++++a +++++  +vk P
  KOO25365.1 255 SGVLLHGPPGTGKTLLAKAVATECQLAflSVKGP 288
                 349*******************999987888877 PP

>> Sigma54_activat  Sigma-54 interaction domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   0.00037      0.27      20      45 ..     252     277 ..     245     286 .. 0.85
   2 ?   -1.9   0.0       3.3   2.4e+03      91     107 ..     311     327 ..     301     329 .. 0.81
   3 ?   -2.7   0.0       5.7   4.1e+03      58      83 ..     424     449 ..     420     453 .. 0.85

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00037
                      TSSS-EEEECSTTSSHHHHHHHHHHH CS
  Sigma54_activat  20 ktdlsvlitGesGtGKellaraihea 45 
                      ++++ vl++G  GtGK+lla+a+ ++
       KOO25365.1 252 RQRSGVLLHGPPGTGKTLLAKAVATE 277
                      56678****************98765 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 3.3
                      HTTTSEEEEETGGGS-H CS
  Sigma54_activat  91 kadgGtlfLDeigelpl 107
                       a   ++f+Dei  l +
       KOO25365.1 311 DAAPCVIFFDEIDALAP 327
                      567789******99875 PP

  == domain 3  score: -2.7 bits;  conditional E-value: 5.7
                      TTTS-TTCHHHHHHEBSSSSSTTTSS CS
  Sigma54_activat  58 caaipeelleseLFGhekGaFtGAek 83 
                      c ++p +l  +eL+   +Ga t A +
       KOO25365.1 424 CEQLPLTLSGAELYALCAGALTLAIH 449
                      77889999999*********998865 PP

>> AAA_11  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   0.00013     0.094      16      38 ..     253     275 ..     243     319 .. 0.73

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 0.00013
      AAA_11  16 eseitliqGPPGtgKTktivell 38 
                 +++ +l++GPPGtgKT    ++ 
  KOO25365.1 253 QRSGVLLHGPPGTGKTLLAKAVA 275
                 45558***********5544444 PP

>> PhoH  PhoH-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.1   0.00018      0.13      20      42 ..     255     277 ..     246     286 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.00018
                 SEEEEE--TTSSTTHHHHHHHHH CS
        PhoH  20 divfaiGpaGtGKtylavalave 42 
                 + v   Gp GtGKt+la a+a e
  KOO25365.1 255 SGVLLHGPPGTGKTLLAKAVATE 277
                 557889*************9986 PP

>> RNA_helicase  RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   0.00021      0.15       1      25 [.     257     281 ..     257     321 .. 0.80

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 0.00021
  RNA_helicase   1 iwlyGpsgeGKStlakeLakallkk 25 
                   ++l+Gp+g+GK++lak +a++ + +
    KOO25365.1 257 VLLHGPPGTGKTLLAKAVATECQLA 281
                   689**************99887644 PP

>> AAA_3  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   0.00023      0.17       2      31 ..     257     286 ..     256     324 .. 0.89

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 0.00023
       AAA_3   2 vllegvPGlaktllvkalakaldlefkriq 31 
                 vll+g PG++ktll+ka+a+  +l f  ++
  KOO25365.1 257 VLLHGPPGTGKTLLAKAVATECQLAFLSVK 286
                 89*******************999997775 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.1   0.00038      0.27       3      23 ..     257     277 ..     255     283 .. 0.90

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00038
                 EEEEC-TTTCHHHHHHHHHHH CS
       NACHT   3 vilqGeaGsGKTtLlqklala 23 
                 v+l+G++G GKT L++ +a++
  KOO25365.1 257 VLLHGPPGTGKTLLAKAVATE 277
                 79***************9987 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   0.00031      0.22       1      23 [.     257     279 ..     257     324 .. 0.81

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 0.00031
      AAA_18   1 IlltGtpGvGKttlakeLskrlg 23 
                 +ll G+pG+GKt lak+++ +++
  KOO25365.1 257 VLLHGPPGTGKTLLAKAVATECQ 279
                 7899**************98864 PP

>> AAA_14  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   0.00038      0.27       5      75 ..     257     324 ..     253     350 .. 0.75

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00038
      AAA_14   5 lvitGaRrvGKTtllkqlikellvkkesilyinldderdkkla..dpe.kllelileklkeekktylflDEiqe 75 
                 +++ G+  +GKT l+k ++ e      +  +++++ +++ +    ++e ++ el+ +  ++    ++f+DEi  
  KOO25365.1 257 VLLHGPPGTGKTLLAKAVATEC-----QLAFLSVKGPELLSPYvgESErQVRELFARA-RDAAPCVIFFDEIDA 324
                 7899**********99999554.....5889999998885422112222455666654.4457899******76 PP

>> DUF2075  Uncharacterized conserved protein (DUF2075)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0   0.00034      0.24       4      25 ..     257     278 ..     254     312 .. 0.81

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00034
     DUF2075   4 vlVtGvaGtGKtvvllnllael 25 
                 vl +G +GtGKt+++ ++++e+
  KOO25365.1 257 VLLHGPPGTGKTLLAKAVATEC 278
                 6889***************999 PP

>> Parvo_NS1  Parvovirus non-structural protein NS1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.0   0.00041      0.29     113     138 ..     253     278 ..     244     281 .. 0.86

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.00041
   Parvo_NS1 113 krntvwfyGpantGktnlaeaIakav 138
                 +r  v+++Gp+ tGkt la+a a+ +
  KOO25365.1 253 QRSGVLLHGPPGTGKTLLAKAVATEC 278
                 67789****************99866 PP

>> NB-ARC  NB-ARC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   0.0   0.00073      0.52      19      43 ..     253     277 ..     245     282 .. 0.82

  Alignments for each domain:
  == domain 1  score: 9.4 bits;  conditional E-value: 0.00073
                 CSEEEEEEESTTSSHHHHHHHHCCS CS
      NB-ARC  19 qslvvalvGmgGvGKttlakqilnk 43 
                 q+  v l+G +G GKt lak +  +
  KOO25365.1 253 QRSGVLLHGPPGTGKTLLAKAVATE 277
                 556689**************99877 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.1       3.4   2.5e+03      50      97 ..      62     107 ..      44     146 .. 0.54
   2 ?   10.9   0.4   0.00034      0.24      27      56 ..     249     277 ..     226     354 .. 0.86

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 3.4
      AAA_25  50 aldlalava.tGkpwlgpvapeqgkV.lyvsaEdsedelrrRlravgeal 97 
                 +++ a +++ +G+    pv + +g V l++ +  s +e++  lra ++++
  KOO25365.1  62 TVSTATTTLpSGEA---PV-TAPGHVvLVLGTARSLEEVPASLRAFFTTI 107
                 33333333333331...44.455554145555566667777777777766 PP

  == domain 2  score: 10.9 bits;  conditional E-value: 0.00034
      AAA_25  27 kgllpagelallaGapgtGKttlaldlala 56 
                 +g+ +  + +ll G+pgtGKt la  +a +
  KOO25365.1 249 GGV-RQRSGVLLHGPPGTGKTLLAKAVATE 277
                 445.5677789************9887765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (517 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       546  (0.0304535); expected 358.6 (0.02)
Passed bias filter:                      374  (0.0208601); expected 358.6 (0.02)
Passed Vit filter:                        77  (0.00429472); expected 17.9 (0.001)
Passed Fwd filter:                        26  (0.00145016); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              25  [number of targets reported over threshold]
# CPU time: 0.57u 0.28s 00:00:00.85 Elapsed: 00:00:00.42
# Mc/sec: 3713.33
//
Query:       KOO25366.1  [L=108]
Description: mitotic-spindle organizing protein 1 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    7.3e-23   80.1   0.2    1.1e-22   79.6   0.2    1.2  1  MOZART1   Mitotic-spindle organizing gamma-tubulin ring assoc


Domain annotation for each model (and alignments):
>> MOZART1  Mitotic-spindle organizing gamma-tubulin ring associated
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   79.6   0.2   5.9e-27   1.1e-22       1      47 []       8      54 ..       8      54 .. 0.98

  Alignments for each domain:
  == domain 1  score: 79.6 bits;  conditional E-value: 5.9e-27
     MOZART1  1 retldilheiSqlLntgLDretLsicvkLienGVnPeaLAavikelR 47
                +etld+l++iSqlL tgLDretL+++v L e+GVnPeaLAavikelR
  KOO25366.1  8 EETLDVLYDISQLLQTGLDRETLAVLVGLTESGVNPEALAAVIKELR 54
                59********************************************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (108 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       487  (0.0271627); expected 358.6 (0.02)
Passed bias filter:                      342  (0.0190752); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.35u 0.24s 00:00:00.59 Elapsed: 00:00:00.38
# Mc/sec: 841.34
//
Query:       KOO25367.1  [L=301]
Description: ATP binding protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
      3e-29  102.0   0.2    4.4e-29  101.5   0.2    1.2  1  DEAD           DEAD/DEAH box helicase
    6.2e-12   45.9   0.0    1.7e-11   44.4   0.0    1.7  2  Helicase_C     Helicase conserved C-terminal domain
    6.5e-06   26.2   0.0    1.1e-05   25.5   0.0    1.3  1  ResIII         Type III restriction enzyme, res subunit
    0.00038   20.2   0.2    0.00067   19.4   0.2    1.4  1  AAA_30         AAA domain
  ------ inclusion threshold ------
      0.097   12.4   0.0        2.8    7.7   0.0    2.1  2  AAA_11         AAA domain
       0.14   12.0   0.0       0.23   11.3   0.0    1.3  1  Helicase_RecD  Helicase


Domain annotation for each model (and alignments):
>> DEAD  DEAD/DEAH box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  101.5   0.2   1.5e-32   4.4e-29       1     130 [.      40     169 ..      40     174 .. 0.94

  Alignments for each domain:
  == domain 1  score: 101.5 bits;  conditional E-value: 1.5e-32
                 -HHHHHHHHHHHTTCEEEEEESTTSSHHHHHHHHHHHHHHHSTTSTS-EEEEEESSHHHHHHHHHHHHHHTTT.ST.SEEEEEETTSSHHHHHHHHHTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xx.xxxxxxxxxxxxxxxxxxxxxx RF
        DEAD   1 tdiQaeaiplilgggdvlvaaeTGsGKTlaflipvlqivyetkgktgpkalivePtreLaeqtlnnlkkfkky.id.lrvlliiggvaardqlskldng 97 
                 t++Qaeai+ +l+g+d +++a+TGsGKTla+++p+l+ +   k ++  +al++ PtreLa q++  ++++     d l v++++ g+ a++q++ l ++
  KOO25367.1  40 TPVQAEAIDVVLSGRDAIIQAKTGSGKTLAYMLPLLAGL---KPQSSVQALVLLPTRELASQVAIVARRLAAGsPDrLLVMALLDGSGAKRQRKWLVAQ 135
                 89**********************************999...89****************************8434688889999***********866 PP

                 .CSEEEEEHHHHHHHHHCTSSHCTTEEEEEEETH CS
                 .xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD  98 .vdivvgtpgrlddllstgklnlsqvrflVlDEa 130
                  +++vvg+ +++d++++ + l+l+ +++lV+DEa
  KOO25367.1 136 pPQVVVGNVQQVDSVIQARLLRLETLKLLVVDEA 169
                 7********************************9 PP

>> Helicase_C  Helicase conserved C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.0       1.4   4.3e+03      15      58 ..      82     132 ..      69     138 .. 0.54
   2 !   44.4   0.0   5.7e-15   1.7e-11      10     111 .]     161     264 ..     145     264 .. 0.83

  Alignments for each domain:
  == domain 1  score: -1.9 bits;  conditional E-value: 1.4
                 TTSEEEEEESSHHHHHHHHHHHHHT.......TSTEEEESTTSTHHHHHHH CS
  Helicase_C  15 eggkilifvntidrlekvklllekk.......gikvavlhgelpqnereei 58 
                 +  ++l+ ++t++ +++v ++ ++         + +a l+g+  +++r+  
  KOO25367.1  82 SSVQALVLLPTRELASQVAIVARRLaagspdrLLVMALLDGSGAKRQRKWL 132
                 556677777777755443333222122233333556666666666666655 PP

  == domain 2  score: 44.4 bits;  conditional E-value: 5.7e-15
                 HHHTTTTSEEEEEESSHHHHHH.HHHHHHHT....TSTEEEESTTSTHHHHHHHHHHHHTTSSSEEEESGGGTSSSTSTTESEEEESSSSSSHHHHHHH CS
  Helicase_C  10 lkleeeggkilifvntidrlek.vklllekk....gikvavlhgelpqnereeileqfnkgesdvLiatdvaerGidipkvnlVinfdlprnvtsyiqr 103
                 lkl ++++ +++f++ +  le+ ++ l        +   a+l    p n r +++++ ++ + ++L++t  ++rG+d+  +++V  +++p++ ++y ++
  KOO25367.1 161 LKLLVVDEAAIVFAPPTLPLERiAEAL---AgvldEAPPAILAEGQPLNARAAAVRELKERRKRLLLSTPLGARGLDVAHCSHVYLLGVPDSAEDYLHA 256
                 467788889999999888665443333...1233467788888889************999999*********************************** PP

                 HTTSSSTT CS
  Helicase_C 104 iGRtgRag 111
                 +GR+gR+g
  KOO25367.1 257 AGRCGRMG 264
                 ******87 PP

>> ResIII  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.5   0.0   3.6e-09   1.1e-05       4     141 ..      39     169 ..      36     174 .. 0.76

  Alignments for each domain:
  == domain 1  score: 25.5 bits;  conditional E-value: 3.6e-09
                 E-HHHHHHHHHHT......TTSEEEEEESTTSTHHHHHHHHHHHH-S.....-EEEEESSHHHHHHHHHHGGGGTGG......GEEEESSS-B--.... CS
      ResIII   4 lreyQeeaienlleklkskrdkrglikmaTGtGKTlvaaklierllkkgkeekflflvprkslleqtleefkkflseayke..igkkvsgdkkka..ke 98 
                 + + Q+eai+ +l+ +       ++i++ TG+GKTl ++    + lk ++  ++l+l p+++l +q     ++++    ++  ++  ++g + k+  k 
  KOO25367.1  39 PTPVQAEAIDVVLSGR------DAIIQAKTGSGKTLAYMLPLLAGLKPQSSVQALVLLPTRELASQVAIVARRLAAGSPDRllVMALLDGSGAKRqrKW 131
                 6788999999998555......59*************955555555555667***************95555554444444556666666666653355 PP

                 .....-SEEEEEHHHHHHTH........HHHTTT-SEEEEETG CS
      ResIII  99 kdstnkkilvttiqsldadseeeeeeseellrdrfdviiiDEa 141
                   ++  +++v ++q++d+ +     +   l+ ++ +++++DEa
  KOO25367.1 132 LVAQPPQVVVGNVQQVDSVI-----QARLLRLETLKLLVVDEA 169
                 6689999**********999.....777777888889999997 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.4   0.2   2.2e-07   0.00067       5     105 ..      42     177 ..      39     191 .. 0.73

  Alignments for each domain:
  == domain 1  score: 19.4 bits;  conditional E-value: 2.2e-07
      AAA_30   5 eQaaavealltsgdrvavltGpAGtGKt..talkalreaweaaggrviglAptgkaAkvLa....................eelgieastiakllkrlk 81 
                  Qa+a++ +l+++d  a++++  G+GKt  ++l  l+ +  ++  + ++l pt + A ++a                    +  g  a++  k+l ++ 
  KOO25367.1  42 VQAEAIDVVLSGRD--AIIQAKTGSGKTlaYMLPLLAGLKPQSSVQALVLLPTRELASQVAivarrlaagspdrllvmallD--GSGAKRQRKWLVAQP 136
                 6******9999998..************444677788888888999999999999999998655555554444443333221..224555555554444 PP

      AAA_30  82 .................grarlepgtllivDEagmvdtkql 105
                                  +  rle+ +ll+vDEa+ v +  +
  KOO25367.1 137 pqvvvgnvqqvdsviqaRLLRLETLKLLVVDEAAIVFAPPT 177
                 9999999999999998866788888********99854444 PP

>> AAA_11  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.7   0.0   0.00092       2.8       6      43 ..      43      92 ..      39     149 .. 0.64
   2 ?    2.6   0.0     0.034     1e+02     209     235 ..     153     178 ..     147     182 .. 0.78

  Alignments for each domain:
  == domain 1  score: 7.7 bits;  conditional E-value: 0.00092
      AAA_11  6 qreaiksalseseitliqGPPGtgKT.ktivellsqll............s 43
                q+eai  +ls ++ ++iq + G+gKT    + ll+ l             +
  KOO25367.1 43 QAEAIDVVLSGRD-AIIQAKTGSGKTlAYMLPLLAGLKpqssvqalvllpT 92
                99***********.9***********8777788877754443444444430 PP

  == domain 2  score: 2.6 bits;  conditional E-value: 0.034
      AAA_11 209 klleklakkfdvviIDEAaqavEpstl 235
                 ++l +l+   +++++DEAa    p tl
  KOO25367.1 153 ARLLRLE-TLKLLVVDEAAIVFAPPTL 178
                 5566665.8899*******98888776 PP

>> Helicase_RecD  Helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   7.8e-05      0.23       2     103 ..      58     173 ..      57     188 .. 0.68

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 7.8e-05
  Helicase_RecD   2 ltAdRGRGKSaalGl.alaaliaegksnilvtapskenvktlfeflakglealglke..............eekkkkaekaelrvr.......kqr 75 
                    ++A+ G GK+ a  l +la l  +++++ lv  p++e ++++   + + l a + ++              +   +k     +++         q+
     KOO25367.1  58 IQAKTGSGKTLAYMLpLLAGLKPQSSVQALVLLPTRELASQVAIVA-RRLAAGSPDRllvmalldgsgakrQ---RKW---LVAQPpqvvvgnVQQ 146
                    8899999999887663567777777788888888888777766655.5554444444688888876553321...221...111113344444899 PP

  Helicase_RecD  76 ieyiapdellklkeqadllvvDEAAaip 103
                    ++ +   +ll+l+ + +llvvDEAA + 
     KOO25367.1 147 VDSVIQARLLRLE-TLKLLVVDEAAIVF 173
                    9999999999987.79*********874 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (301 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       293  (0.0163422); expected 358.6 (0.02)
Passed bias filter:                      244  (0.0136092); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.43u 0.25s 00:00:00.68 Elapsed: 00:00:00.40
# Mc/sec: 2253.19
//
Query:       KOO25368.1  [L=211]
Description: hypothetical protein Ctob_007713 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
  ------ inclusion threshold ------
      0.068   13.6   0.0      0.086   13.2   0.0    1.3  1  Lipase_GDSL_2  GDSL-like Lipase/Acylhydrolase family


Domain annotation for each model (and alignments):
>> Lipase_GDSL_2  GDSL-like Lipase/Acylhydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.0   4.8e-06     0.086     115     171 ..     133     188 ..      70     192 .. 0.76

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 4.8e-06
                    TTT-TTSTCCHHHHHHHHHHHHHHHHHHCT-EEE-HHHHHHHCCCCCGGBBTTS.SS CS
  Lipase_GDSL_2 115 tpeaaadarelnaviaaynealrevaaeegvpfvDlhdaladsgerladlladdglH 171
                    +  +++++     ++  +n+++r++ ++ g +++D+++a+ + + r+ d  + d lH
     KOO25368.1 133 CNAGWGYNSM-GHYLFVANQVARQIVEASGFEVFDTFPAFVHAAPRWYDVQGNDALH 188
                    4455555443.6667778*******************************99999999 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (211 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       414  (0.0230911); expected 358.6 (0.02)
Passed bias filter:                      386  (0.0215294); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.23s 00:00:00.62 Elapsed: 00:00:00.37
# Mc/sec: 1709.17
//
Query:       KOO25369.1  [L=420]
Description: aspartic proteinase-like protein 2-like protein, partial [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      4e-26   91.7   0.0      6e-26   91.2   0.0    1.3  1  TAXi_C    Xylanase inhibitor C-terminal
    2.3e-25   89.7   0.0    2.1e-18   66.8   0.0    2.0  2  Asp       Eukaryotic aspartyl protease
    8.2e-25   88.1   4.0    9.3e-25   87.9   2.4    1.8  2  TAXi_N    Xylanase inhibitor N-terminal


Domain annotation for each model (and alignments):
>> TAXi_C  Xylanase inhibitor C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   91.2   0.0     1e-29     6e-26       1     159 [.     255     401 ..     255     403 .. 0.96

  Alignments for each domain:
  == domain 1  score: 91.2 bits;  conditional E-value: 1e-29
                 -EEEEEEEEEETTEEE-------EE-S----SEEE-SSSSSEEE-HHHHHHHHHHHHHTS-GG....G.E---TT-S-EEETTS......-S----EEE CS
      TAXi_C   1 eYyipvkgisvngkrlplpasaldldktgsggtvlstgtpytvletdvYralvkafakelaaek.vkr.vaavkpfelCynsselgstragpavPtitl 97 
                 +Y +p+++++++g+ +  pas           t++++gt++++l++d+Yr+++++f++e+   +  +r ++ + p ++Cy  s+    +   ++ ++tl
  KOO25369.1 255 SYTVPLTDLKIDGRSVGAPASRY-------FSTIVDSGTTFMYLPPDAYRPVRDHFRSECPWGTcTARvAKGEYPDDYCYTMSA----QELDQMSPMTL 342
                 5*******************996.......9*******************************998777788899**********....88999999*** PP

                 EESSS-EEEE-GGGGEEE-SSSEEEE-EEE--S--SSSEEE-HHHHBTS-EEEETTTTEEEE CS
      TAXi_C  98 vleggaewtisgenllvkveggvvClafvesgvagesavviGglqlednllvFDleksrlgF 159
                 ++egg ++++ ++++ ++ ++g++Cl++ ++   + + +viG++ ++++ +vFD  ++r+gF
  KOO25369.1 343 HFEGGVTLDFGPRQYAYELRQGIWCLGVFDN---EHNGAVIGAANMRHHEVVFDRGSRRVGF 401
                 *******************************...999************************9 PP

>> Asp  Eukaryotic aspartyl protease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.0   0.0   3.1e-08   0.00019       3      55 ..      60     116 ..      57     122 .. 0.76
   2 !   66.8   0.0   3.5e-22   2.1e-18      61     312 ..     140     401 ..     128     404 .. 0.87

  Alignments for each domain:
  == domain 1  score: 21.0 bits;  conditional E-value: 3.1e-08
                 EEEEEETTTTEEEEEEEETT--SEEEEBTTESTSHC....HHTSS-B-GGG-TT-EE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx....xxxxxxxxxxxxxxxxx RF
         Asp   3 fgeisiGtpeqkftvifDTGSsdlWVpsskckkssa....ckshstydpskSstykk 55 
                  +e+ +Gtp ++f +i+DTGS+ +  p s+c    +    +     +dp +S+++++
  KOO25369.1  60 SAEVCVGTPARSFDLIVDTGSALTAFPCSDCPHCGEhkhsSVPGARFDPAHSTSART 116
                 579**************************9875333111133345699999998875 PP

  == domain 2  score: 66.8 bits;  conditional E-value: 3.5e-22
                 EEECTTS.EEEEEEEEEEEEETTEEEE.....EEEEEEEEEESSHHHTTSSSSEEEE-S-GGGSCGG.SCCHHHHHHHTTSSSSSEEEEEE-STTSSEE CS
                 xxxxxxx.xxxxxxxxxxxxxxxxxxx.....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
         Asp  61 sisYGdg.svsGflsqdtvkvggltvk.....nqefgeatkepgstflaakfdGiLGlgfkeisvee.atpvfdnlvsqglikepvfsvylnreeeegg 152
                  +sY +g s++G l++d+  +g+   +       +fg  t e+g  f++   dGi G +  + ++ + +   +  l      + +vfs+ l+   e+ g
  KOO25369.1 140 GVSYTEGsSIRGRLVEDSFWFGQAETPsprnvRATFGCQTYESGL-FYSQVADGISGFS--QADTYGpTLFDYMRLATD---APDVFSMCLD---ETHG 229
                 589********************9986222224689999999996.666669***9977..333333133335555555...789******7...999* PP

                 EEEESSEEGGGEEEEEEEEEESSTSSTEEEEEEEEETTEEE..EEEEEEEEEEETTCSSEEEEHHHHHHHHHHHTTEEEET.............TCEEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.............xxxxx RF
         Asp 153 eivfGgvDeskykGsltyvpvtskgywqielesvtvggktv..lcssgcqailDtGTsllalptsivekiakaigakkses.............egeyv 236
                  +v+G++ ++ ++ s  ++p t  g +++ l++++++g++v    s+ ++ i+D+GT++++lp ++ + + +++ ++                    y+
  KOO25369.1 230 ALVLGASVPAALHASALWIPYTGGGSYTVPLTDLKIDGRSVgaPASRYFSTIVDSGTTFMYLPPDAYRPVRDHFRSECPWGtctarvakgeypdDYCYT 328
                 *****************************************97788999*************************99888778999*******9999999 PP

                 EETTGGGGSEEEEEEE.TTEEEEEEGGGGEEEESSSTTSEEEESEEECCTSSSEEEEHHHHTTEEEEEETTTTEEEE CS
                 xxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
         Asp 237 vdCdslsslpdisfti.ggakitvpvselvlkeeeseesqCilglvseeegdlwiLGdvFlrsayvvfdldnnrvgl 312
                 ++ ++l +++ +++++ gg++++  ++++ ++ +++    C+  +  ++e++  ++G   +r+  vvfd++ +rvg+
  KOO25369.1 329 MSAQELDQMSPMTLHFeGGVTLDFGPRQYAYELRQG--IWCLGVF--DNEHNGAVIGAANMRHHEVVFDRGSRRVGF 401
                 9*************99889*************9985..4798888..8889999**********************9 PP

>> TAXi_N  Xylanase inhibitor N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   87.9   2.4   1.6e-28   9.3e-25       3     177 ..      61     234 ..      59     235 .. 0.88
   2 ?   -1.3   0.0      0.37   2.2e+03       7      33 ..     270     297 ..     269     333 .. 0.70

  Alignments for each domain:
  == domain 1  score: 87.9 bits;  conditional E-value: 1.6e-28
      TAXi_N   3 vsisiGtppqplklvvDtGsdltWvqCkpcka.....cssqkkpvfdpsksstykavpcssslCkaceasssaksgsssstceyeisygadgssssGvl 96 
                 +++ +Gtp++++ l+vDtGs lt + C+ c +      ss +   fdp++s++ ++v cs++         +++s+ s  tcey +sy+ +gss +G l
  KOO25369.1  61 AEVCVGTPARSFDLIVDTGSALTAFPCSDCPHcgehkHSSVPGARFDPAHSTSARTVDCSQPPPG-----MHCRSCGSGGTCEYGVSYT-EGSSIRGRL 153
                 6789***********************999996666666677789****************9999.....7889999***********5.999****** PP

      TAXi_N  97 atdtltlsstdgksvkvpnlvfGCgksnlgglaag.adGilGLGrgk...lSlvsqlaskgslgnkFsyCLssssssssgvlffG 177
                 ++d++ + +++ +s +  + +fGC++ ++g ++++ adGi G+++++     l + +  ++    +Fs+CL    ++ +g+l++G
  KOO25369.1 154 VEDSFWFGQAETPSPRNVRATFGCQTYESGLFYSQvADGISGFSQADtygPTLFDYMRLATDAPDVFSMCL----DETHGALVLG 234
                 *******99988888888*******977777777569********99555578888877789*********....8888999988 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 0.37
      TAXi_N   7 iGtppqplk.lvvDtGsdltWvqCkpck 33 
                 +G p+ +++  +vD G  ++++  ++ +
  KOO25369.1 270 VGAPASRYFsTIVDSGTTFMYLPPDAYR 297
                 6778655442788999999888886544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (420 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       464  (0.0258799); expected 358.6 (0.02)
Passed bias filter:                      322  (0.0179597); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.49u 0.23s 00:00:00.72 Elapsed: 00:00:00.41
# Mc/sec: 3110.13
//
Query:       KOO25370.1  [L=543]
Description: hypothetical protein Ctob_007711 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
     0.0043   16.5   0.5       0.02   14.4   0.2    2.1  2  EF-hand_1        EF hand
     0.0094   15.8   0.2       0.12   12.4   0.1    2.4  2  EF-hand_6        EF-hand domain
  ------ inclusion threshold ------
      0.017   15.8   0.0      0.017   15.8   0.0    3.0  3  KIAA1430         KIAA1430 homologue
      0.072   12.6   0.4       0.23   11.0   0.4    1.8  1  EF-hand_5        EF hand
        4.8    7.1   5.3       0.94    9.4   1.1    1.9  2  dCMP_cyt_deam_1  Cytidine and deoxycytidylate deaminase zinc-


Domain annotation for each model (and alignments):
>> EF-hand_1  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.4   0.2   5.7e-06      0.02       9      25 ..      29      45 ..      27      48 .. 0.92
   2 ?   -0.9   0.0      0.45   1.6e+03      15      28 ..     412     425 ..     411     426 .. 0.82

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 5.7e-06
                HTTTSSSEEEHHHHHHH CS
   EF-hand_1  9 fDkDgdGkIdfeEfkel 25
                fD+DgdG I+ +E+++l
  KOO25370.1 29 FDVDGDGVIEENELVDL 45
                9*************986 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 0.45
                 SEEEHHHHHHHHHH CS
   EF-hand_1  15 GkIdfeEfkellkk 28 
                  +++++E+++ l+k
  KOO25370.1 412 RYLTIDEMVATLQK 425
                 589*****998876 PP

>> EF-hand_6  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.4   0.1   3.3e-05      0.12       9      25 ..      29      45 ..      27      50 .. 0.90
   2 ?    0.4   0.0      0.23   8.3e+02      14      28 ..     411     425 ..     409     433 .. 0.84

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 3.3e-05
   EF-hand_6  9 fDkdgdGkidaeElrka 25
                fD+dgdG i  +El+++
  KOO25370.1 29 FDVDGDGVIEENELVDL 45
                9*************987 PP

  == domain 2  score: 0.4 bits;  conditional E-value: 0.23
   EF-hand_6  14 dGkidaeElrkalrk 28 
                 + +++++E+++ l+k
  KOO25370.1 411 NRYLTIDEMVATLQK 425
                 569*******99985 PP

>> KIAA1430  KIAA1430 homologue
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.1       2.5     9e+03      72      88 ..      78      91 ..      64      95 .. 0.45
   2 ?   -2.6   2.8       2.7   9.8e+03      62      97 ..     352     386 ..     291     388 .. 0.53
   3 ?   15.8   0.0   4.8e-06     0.017      37     101 ..     460     523 ..     435     524 .. 0.81

  Alignments for each domain:
  == domain 1  score: -2.5 bits;  conditional E-value: 2.5
    KIAA1430 72 ktaskslnaenrkkelq 88
                k++ ++    +r+++ +
  KOO25370.1 78 KAKAAR---VRREQQER 91
                222222...23333333 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 2.7
    KIAA1430  62 ksassqsqksktaskslnaenrkkelqkIeeENqkl 97 
                 ++ +s +++ ++a++ +  + ++ e+++I +E ++l
  KOO25370.1 352 TAVQSGKSNAEMAKEEI-VRAKQMEAEEIVKESKRL 386
                 22222333333333333.455555566666665555 PP

  == domain 3  score: 15.8 bits;  conditional E-value: 4.8e-06
    KIAA1430  37 lkeiereNqiLleklseimrrkgkkksassqsqksktasksl...naenrkkelqkIeeENqkllkRl 101
                   ++ +eN  L +++++i  + +     + + +   +a++++   +++++k +++k++ +N +++k++
  KOO25370.1 460 SDKVTKENAALFTRIHNIGAKTD----DDVDDEAAGAARATMaaeSEKRKKDQAKKLAAQNVAIKKKI 523
                 56889*****************5....455566666666666443456666669************99 PP

>> EF-hand_5  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.4   6.4e-05      0.23       8      21 ..      29      42 ..      29      48 .. 0.88

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 6.4e-05
                H-SS-SSCE-HHHH CS
   EF-hand_5  8 iDlNgDGkIskeEL 21
                +D++gDG I   EL
  KOO25370.1 29 FDVDGDGVIEENEL 42
                8************9 PP

>> dCMP_cyt_deam_1  Cytidine and deoxycytidylate deaminase zinc-binding region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   1.1   0.00026      0.94       3      77 ..     339     416 ..     337     427 .. 0.83
   2 ?   -2.5   0.2       1.3   4.7e+03      11      39 ..     498     526 ..     493     536 .. 0.57

  Alignments for each domain:
  == domain 1  score: 9.4 bits;  conditional E-value: 0.00026
                      HHHHHHHHHHHHHHHHH.TTTSCSEEE.EEEETTEEEEEEESBHHCCTGTTB-HHHHHHHHHHHHT.SSCETTEEEEE CS
  dCMP_cyt_deam_1   3 kdekllelalkaakeaq.kcsnfkVGa.vivkngeiistgyngepaggsktiHAEvnAilkaakng.gsklegatlyv 77 
                      +++k++++a++a +  q  +sn +++   iv+ +++ +++  +e +   + +HA ++A+lka k++  +++++ +l +
       KOO25370.1 339 EEQKYMDKAIAARTAVQsGKSNAEMAKeEIVRAKQMEAEEIVKESKRLMYLAHADQVAVLKANKTRtAVSFDNRYLTI 416
                      5688899998888888888888888862588888999999999999999***************97788887777655 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 1.3
                      HHHHHHHHHTTTSCSEEEEEEE.TTEEEEE CS
  dCMP_cyt_deam_1  11 alkaakeaqkcsnfkVGavivk.ngeiist 39 
                      a +  k+  k++  k +a  v  +++i +t
       KOO25370.1 498 AAESEKRK-KDQAKKLAAQNVAiKKKIAAT 526
                      44444444.666666666666655555554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (543 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1511  (0.0842769); expected 358.6 (0.02)
Passed bias filter:                      389  (0.0216967); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.56u 0.25s 00:00:00.81 Elapsed: 00:00:00.40
# Mc/sec: 4031.23
//
Query:       KOO25371.1  [L=342]
Description: leucine rich repeat -containing protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    8.8e-16   57.4  12.6    7.9e-09   35.1   1.9    3.1  4  LRR_8     Leucine rich repeat
    8.6e-11   42.1   0.0    1.4e-10   41.4   0.0    1.3  1  Roc       Ras of Complex, Roc, domain of DAPkinase
    8.1e-10   38.8   2.1    0.00011   22.5   0.4    3.3  4  LRR_4     Leucine Rich repeats (2 copies)
    0.00079   19.6   2.1        6.3    7.8   0.0    4.3  4  LRR_1     Leucine Rich Repeat
      0.001   18.7   0.0      0.002   17.7   0.0    1.5  1  Ras       Ras family
  ------ inclusion threshold ------
      0.037   13.2   0.0      0.054   12.7   0.0    1.1  1  G-alpha   G-protein alpha subunit
       0.62   10.3   3.0         19    5.6   0.0    3.4  3  LRR_6     Leucine Rich repeat


Domain annotation for each model (and alignments):
>> LRR_8  Leucine rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.0   0.0       5.3   1.3e+04      48      55 ..      13      20 ..      11      22 .. 0.46
   2 !   11.1   0.1   9.7e-05      0.25      23      56 ..      77     109 ..      72     114 .. 0.70
   3 !   35.1   1.9   3.1e-12   7.9e-09       2      61 .]     103     160 ..     102     160 .. 0.96
   4 !   32.2   0.6   2.5e-11   6.4e-08       1      52 [.     125     174 ..     125     181 .. 0.92

  Alignments for each domain:
  == domain 1  score: -4.0 bits;  conditional E-value: 5.3
                --S-.EEE CS
       LRR_8 48 LpsLrsLd 55
                L++L sLd
  KOO25371.1 13 LSQLASLD 20
                44444444 PP

  == domain 2  score: 11.1 bits;  conditional E-value: 9.7e-05
                 T-TT--EEE--SS---GGGGGGGTT--S-.EEE- CS
       LRR_8  23 glsnLkvLdLsnNllttlspgafsgLpsLrsLdL 56 
                 +l  L+vLdL++N+l  + p+ + + +sL+ L L
  KOO25371.1  77 KLAELRVLDLTRNRLGAV-PEYLGSVHSLQILML 109
                 577777777777777777.677777777777766 PP

  == domain 3  score: 35.1 bits;  conditional E-value: 3.1e-12
                 T-SEEE-TTS--SEE-TTSSTT-TT--EEE--SS---GGGGGGGTT--S-.EEE--SS-- CS
       LRR_8   2 nLtsLdLsnNrltslddeaFkglsnLkvLdLsnNllttlspgafsgLpsLrsLdLsgNrL 61 
                 +L++L+L +  lt+l+ +  + l++L+ L+L++N+lt+l p++f+ L+ Lr L L +N+L
  KOO25371.1 103 SLQILMLYDCGLTELPASLGR-LRGLRKLELGDNRLTRL-PDSFAELHGLRDLGLFNNQL 160
                 799************999988.*****************.9*****************98 PP

  == domain 4  score: 32.2 bits;  conditional E-value: 2.5e-11
                 TT-SEEE-TTS--SEE-TTSSTT-TT--EEE--SS---GGGGGGGTT--S-. CS
       LRR_8   1 pnLtsLdLsnNrltslddeaFkglsnLkvLdLsnNllttlspgafsgLpsLr 52 
                 ++L++L L +Nrlt l+d++ + l++L+ L L nN+lt l p++ ++Lp+L 
  KOO25371.1 125 RGLRKLELGDNRLTRLPDSFAE-LHGLRDLGLFNNQLTIL-PRWVAHLPKLF 174
                 579*************998888.*****************.9********97 PP

>> Roc  Ras of Complex, Roc, domain of DAPkinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.4   0.0   5.5e-14   1.4e-10       1     106 [.     224     336 ..     224     340 .. 0.79

  Alignments for each domain:
  == domain 1  score: 41.4 bits;  conditional E-value: 5.5e-14
                 EEEEESSTTSSHHHHHHCHCT-CCC..-EEETTTTEEEEEEECGGSGGCTTBTTTTCEEEEEEEE-SGGCTTTT-HHHHCTSCEEEEEEE......GHH CS
         Roc   1 KvvlvGdsgvGKtsllkrfvedkfs..ekekstigvdfltkevtkikgvendkkvkkvklniWDtaGqerfrslhplylreaalailvyd......srs 91 
                 K+vlvG +++GK+s l+ +  ++ +   + + t+++d+ t  + +      ++++ ++ l+ WD+aGq ++ + ++ yl + al++l++       ++ 
  KOO25371.1 224 KMVLVGTGKAGKSSTLRGMKYGEPRpfGDDERTVQLDIWTLALGEPPAPGAEEDM-RIVLSAWDFAGQPEYAAGQQQYLIKGALYLLLVPahratdEEV 321
                 89**************98888877622568999****999988887776666665.699**************************99875332211333 PP

                 HHCHHHHHHHHHHHC CS
         Roc  92 senlkeWlkelkkva 106
                 +e l +Wl+ l+++a
  KOO25371.1 322 DEVLFRWLDALQAKA 336
                 445668999999876 PP

>> LRR_4  Leucine Rich repeats (2 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.7   0.0   0.00095       2.4      17      39 ..      73      94 ..      58     100 .. 0.77
   2 !   19.5   0.1   3.8e-07   0.00096       2      41 ..     103     142 ..     102     147 .. 0.87
   3 !   22.5   0.4   4.3e-08   0.00011       2      39 ..     126     163 ..     125     167 .. 0.92
   4 !    7.5   0.1    0.0022       5.6       2      27 ..     149     175 ..     148     177 .. 0.79

  Alignments for each domain:
  == domain 1  score: 8.7 bits;  conditional E-value: 0.00095
                S-HHH-TT--EEE-.-S-----G CS
       LRR_4 17 plleklpnLkeLdLsgNnlitdl 39
                + l+kl  L++LdL++N +++ +
  KOO25371.1 73 EQLGKLAELRVLDLTRN-RLGAV 94
                44668999999999888.77655 PP

  == domain 2  score: 19.5 bits;  conditional E-value: 3.8e-07
                 S--EEE--SS---E-S-.HHH-TT--EEE-.-S-----GGG CS
       LRR_4   2 nLevLdLsnNqltdipl.leklpnLkeLdLsgNnlitdlde 41 
                 +L++L L ++ lt++p  l+ l  L++L L g n++t+l++
  KOO25371.1 103 SLQILMLYDCGLTELPAsLGRLRGLRKLEL-GDNRLTRLPD 142
                 8****************6556*********.7669999954 PP

  == domain 3  score: 22.5 bits;  conditional E-value: 4.3e-08
                 S--EEE--SS---E-S-.HHH-TT--EEE-.-S-----G CS
       LRR_4   2 nLevLdLsnNqltdipl.leklpnLkeLdLsgNnlitdl 39 
                  L++L L++N+lt +p  ++ l  L+ L L +Nn++t l
  KOO25371.1 126 GLRKLELGDNRLTRLPDsFAELHGLRDLGL-FNNQLTIL 163
                 69***************9888*********.*99*9755 PP

  == domain 4  score: 7.5 bits;  conditional E-value: 0.0022
                 S--EEE--SS---E-S-.HHH-TT--E CS
       LRR_4   2 nLevLdLsnNqltdipl.leklpnLke 27 
                  L+ L L+nNqlt +p   + lp+L +
  KOO25371.1 149 GLRDLGLFNNQLTILPRwVAHLPKLFV 175
                 69999********98885445999866 PP

>> LRR_1  Leucine Rich Repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.2   0.0    0.0078        20       2      15 ..      81      93 ..      80     101 .. 0.78
   2 ?    1.5   0.0      0.29   7.3e+02       1      20 [.     103     121 ..     103     124 .. 0.76
   3 !    7.8   0.0    0.0025       6.3       2      20 ..     127     144 ..     126     147 .. 0.78
   4 ?   -0.5   0.1       1.2   3.2e+03       2      22 ..     150     169 ..     149     170 .. 0.75

  Alignments for each domain:
  == domain 1  score: 6.2 bits;  conditional E-value: 0.0078
       LRR_1  2 LrhLdLsnnpllgl 15
                Lr+LdL++n+l g 
  KOO25371.1 81 LRVLDLTRNRL-GA 93
                9*********9.44 PP

  == domain 2  score: 1.5 bits;  conditional E-value: 0.29
       LRR_1   1 nLrhLdLsnnpllglppnsf 20 
                 +L+ L L ++ l+  +p+s+
  KOO25371.1 103 SLQILMLYDCGLT-ELPASL 121
                 6999********6.555555 PP

  == domain 3  score: 7.8 bits;  conditional E-value: 0.0025
       LRR_1   2 LrhLdLsnnpllglppnsf 20 
                 Lr+L L++n+l+  +p+sf
  KOO25371.1 127 LRKLELGDNRLT-RLPDSF 144
                 9**********6.555555 PP

  == domain 4  score: -0.5 bits;  conditional E-value: 1.2
       LRR_1   2 LrhLdLsnnpllglppnsfqn 22 
                 Lr L L nn+l  ++p++  +
  KOO25371.1 150 LRDLGLFNNQL-TILPRWVAH 169
                 67788899999.688887665 PP

>> Ras  Ras family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.7   0.0   7.8e-07     0.002       1      78 [.     224     310 ..     224     340 .. 0.78

  Alignments for each domain:
  == domain 1  score: 17.7 bits;  conditional E-value: 7.8e-07
                 EEEEEESTTSSHHHHH..HHHHHSSCSSSCTTTSSEEEEEEEEEET.......TEEEEEEEEEETTSGGGHHHHHHHHTTESEEEEE CS
         Ras   1 KlvlvGdsavGKtsll..lrfvkdkFkeeyesTigvdfytkeievd.......gkevkleiwDTAGqeefkslrelyyrdaegillv 78 
                 K+vlvG +  GK+s l  +++ + +   + e T+  d  t  +          + ++ l+ wD AGq e+ + +++y+ ++   ll+
  KOO25371.1 224 KMVLVGTGKAGKSSTLrgMKYGEPRPFGDDERTVQLDIWTLALGEPpapgaeeDMRIVLSAWDFAGQPEYAAGQQQYLIKGALYLLL 310
                 89************994456777666667799999997777665556777777999*********************9988877765 PP

>> G-alpha  G-protein alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   2.1e-05     0.054      18      56 ..     217     255 ..     206     263 .. 0.77

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 2.1e-05
                 XXE..EEEEEEEESTTSSHHHHHHHHHHHCS----HHHH CS
     G-alpha  18 rkkkrevkllllGqseSGKsTilkqlkllykkgfseeel 56 
                   ++r  k++l+G+++ GKs++l+ +k  +   f ++e+
  KOO25371.1 217 ATTSRRAKMVLVGTGKAGKSSTLRGMKYGEPRPFGDDER 255
                 3334579********************666666777765 PP

>> LRR_6  Leucine Rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.6   0.0    0.0076        19       5      17 ..      81      93 ..      79      94 .. 0.91
   2 ?    2.7   0.1     0.066   1.7e+02       5      16 ..     127     138 ..     124     138 .. 0.88
   3 ?   -0.4   0.3      0.65   1.7e+03       5      16 ..     150     161 ..     147     161 .. 0.86

  Alignments for each domain:
  == domain 1  score: 5.6 bits;  conditional E-value: 0.0076
       LRR_6  5 LteLdLsgNdIgD 17
                L+ LdL+ N +g 
  KOO25371.1 81 LRVLDLTRNRLGA 93
                89********995 PP

  == domain 2  score: 2.7 bits;  conditional E-value: 0.066
       LRR_6   5 LteLdLsgNdIg 16 
                 L++L+L +N ++
  KOO25371.1 127 LRKLELGDNRLT 138
                 9********986 PP

  == domain 3  score: -0.4 bits;  conditional E-value: 0.65
       LRR_6   5 LteLdLsgNdIg 16 
                 L+ L L  N+++
  KOO25371.1 150 LRDLGLFNNQLT 161
                 899******986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (342 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       274  (0.0152825); expected 358.6 (0.02)
Passed bias filter:                      262  (0.0146132); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.46u 0.26s 00:00:00.72 Elapsed: 00:00:00.43
# Mc/sec: 2408.42
//
Query:       KOO25372.1  [L=405]
Description: hypothetical protein Ctob_007715 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
  ------ inclusion threshold ------
       0.15   11.4   0.3       0.23   10.8   0.3    1.2  1  Phytochelatin_C  Domain of unknown function (DUF1984)


Domain annotation for each model (and alignments):
>> Phytochelatin_C  Domain of unknown function (DUF1984)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.3   1.3e-05      0.23     124     173 ..     289     338 ..     258     344 .. 0.84

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 1.3e-05
  Phytochelatin_C 124 eiaasvcCqgaelLsgklssskglccretcvkclkadddkeitvvsgtvv 173
                       +a  ++Cq++   ++  s+    +c e+c+k++ a d ke+ v+s++v+
       KOO25372.1 289 MEAEVASCQAQRRCTEGASKPVVQACMEACLKSMLARDAKEAAVTSSMVF 338
                      3455569***************************************9997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (405 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       514  (0.0286686); expected 358.6 (0.02)
Passed bias filter:                      346  (0.0192983); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.25s 00:00:00.74 Elapsed: 00:00:00.42
# Mc/sec: 2892.65
//
Query:       KOO25373.1  [L=1767]
Description: wd40 repeat-containing protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    7.3e-13   48.3  13.6      1e-12   47.8  12.1    1.9  1  Ion_trans       Ion transport protein
    7.2e-07   28.2  15.3    0.00058   18.7  12.7    2.2  2  PKD_channel     Polycystin cation channel
    1.5e-05   25.6  16.8         16    6.5   0.0    9.7 11  WD40            WD domain, G-beta repeat
     0.0095   16.5   1.7       0.42   11.3   0.1    3.0  3  Ank_4           Ankyrin repeats (many copies)
  ------ inclusion threshold ------
      0.013   16.1   0.2      0.035   14.7   0.2    1.7  1  Ank_2           Ankyrin repeats (3 copies)
      0.023   15.0   0.2      0.066   13.5   0.2    1.7  1  DNA_ligase_A_N  DNA ligase N terminus
      0.052   12.9   0.0         32    3.7   0.0    3.5  4  WD40_like       WD40-like domain
      0.075   12.3   0.1       0.14   11.4   0.1    1.3  1  DUF707          Protein of unknown function (DUF707)


Domain annotation for each model (and alignments):
>> Ion_trans  Ion transport protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.8  12.1   4.5e-16     1e-12      52     244 ..    1315    1596 ..    1295    1597 .. 0.78

  Alignments for each domain:
  == domain 1  score: 47.8 bits;  conditional E-value: 4.5e-16
                  HHHHHHTHHHHHHHCHSHHHHHHHHHHHHHHHHH.........................HHHH.................................. CS
   Ion_trans   52 lkilalgllikkrYlrdpwnilDflvvlpsllsl.........................vlse.................................. 89  
                   +++ +g+   ++Yl+++wn++D++ +   +++                          v  +                                  
  KOO25373.1 1315 HQLRQAGV---LEYLSSMWNWFDMITIAGQVIVNvllclrdedgvrvdipgmtylyqgtV--Nnettrrlgervaadvmsgggvgggaaagwpvmvd 1406
                  35555788...*********************5566666666655555555555555551..05556666667777777778888888888888888 PP

                  ..................................HHHHHHHHHHHHGGGGGGHHHCHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
   Ion_trans   90 ..................................esllllsvlrlfrvlrllklisrleglrtlvtalirsvkdllnvlllllvvlfifaligvqlf 152 
                                                      ++l++++ lf +lr+l +++   +l +l ++l  ++ d+l ++ l+++++++f ++++ + 
  KOO25373.1 1407 eepgksmrhamrllkkggagaaadesgvinyeigLLVYLQALVCLFACLRMLYFFQGNLKLGALAHSLRTIMIDILPLFALMFIFIIAFCSAFIVII 1503
                  9999999999999999*****************8888899999999***********************************************9999 PP

                  TTSCCCCCCSCCSTSSSTTTSSSSSSHHHHHHHHHHHHTTSSHHHHHHHHHHHS..........HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
   Ion_trans  153 kgklreknecaktwenpnngntnFdnfftallwlfrlmttegwgdilyatldek..........skvaliyfvifiilgsflllNlliaviadnfqe 239 
                   +++      a+ +++++ ++  ++ f++a+l ++      g   +++a + +           + + li+f ++++++ ++llN+lia++++++ +
  KOO25373.1 1504 TRQFG-----AEPQSEHEAKFKQWHHFWDAFLVMIN----MGVYAMTDAAILAYgtdpvfepaeQRFVLIMFQLYMLFVQLILLNMLIAIMSESHTR 1591
                  55555.....22333334444445556666666665....66777777777777777999***********************************99 PP

                  HHHHH CS
   Ion_trans  240 ltere 244 
                  + e++
  KOO25373.1 1592 VSEQS 1596
                  99886 PP

>> PKD_channel  Polycystin cation channel
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.9   0.0   0.00012      0.27     216     268 ..    1299    1353 ..    1288    1358 .. 0.78
   2 !   18.7  12.7   2.6e-07   0.00058     297     424 ..    1442    1590 ..    1438    1592 .. 0.85

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.00012
                   HHHHHHHHH.HHHHHH-------.-------HHHHHHHHHHHHHHHHHHHHHHHH CS
  PKD_channel  216 vvfvvfvly.fvveeilkirker.asylrsvwnlldlaivvlsvvlivlailrev 268 
                   ++++ f ++    +e+ ++r+ + ++yl+s+wn  d++ ++  v++ vl  lr+ 
   KOO25373.1 1299 FFWTCFYCVrKLSTEMHQLRQAGvLEYLSSMWNWFDMITIAGQVIVNVLLCLRDE 1353
                   444444333134578899999999*************************999985 PP

  == domain 2  score: 18.7 bits;  conditional E-value: 2.6e-07
                   HHHHHHHHHHHHHHGGGGG------------------------HHHHHHHHHHHHHHHHHHS....S.....SS-...STTSSHHHHHHHHHHHHT CS
  PKD_channel  297 lriilavlvflttlkllkvlrfnktlslltktlaralkdvlgfalvivilflayaqlgvllf....G.....tqa...snfsnlvksiltlfrlil 380 
                   l +++a++ ++++l++l++ + n +l  l + l   + d+l ++ +++i+++a++ + ++++    G     +++   +++ ++  ++l+++++ +
   KOO25373.1 1442 LVYLQALVCLFACLRMLYFFQGNLKLGALAHSLRTIMIDILPLFALMFIFIIAFCSAFIVIItrqfGaepqsEHEakfKQWHHFWDAFLVMINMGV 1537
                   56788999999********************************************9999886222232222234411145678999*****99999 PP

                   T---HH.........HHHHH-TTHHHHHHHHHHHHHHHHHHHHHHHHHHT-XX CS
  PKD_channel  381 gdfqyt.........elesgnrvLGpllllalvflvifillnlflaiindsye 424 
                   +++  +          +e +++ +  +++ +++++v  illn+++ai+ +s +
   KOO25373.1 1538 YAMTDAailaygtdpVFEPAEQRFVLIMFQLYMLFVQLILLNMLIAIMSESHT 1590
                   999988999999*9999*******************************99876 PP

>> WD40  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.6   0.0     0.029        65      12      29 ..     113     130 ..     104     137 .. 0.87
   2 ?    0.2   0.1      0.74   1.7e+03       4      37 ..     149     184 ..     146     185 .. 0.69
   3 ?   -2.6   0.0       5.5   1.2e+04       5      30 ..     195     218 ..     192     225 .. 0.73
   4 ?    4.5   0.0     0.033        73      11      37 ..     255     281 ..     245     281 .. 0.83
   5 ?    1.5   0.0      0.29   6.5e+02       7      33 ..     300     326 ..     294     326 .. 0.82
   6 ?   -1.4   0.0       2.4   5.4e+03      15      38 .]     439     460 ..     438     460 .. 0.78
   7 ?    1.4   0.0       0.3   6.8e+02      13      34 ..     476     497 ..     464     501 .. 0.86
   8 ?    4.7   0.3     0.028        64       5      38 .]     509     549 ..     505     549 .. 0.69
   9 !    6.5   0.0    0.0073        16      10      29 ..     571     591 ..     565     600 .. 0.76
  10 ?   -1.8   0.0       3.2   7.2e+03      14      36 ..     722     744 ..     718     746 .. 0.77
  11 ?    2.2   0.0      0.17   3.9e+02      12      38 .]     808     834 ..     797     834 .. 0.86

  Alignments for each domain:
  == domain 1  score: 4.6 bits;  conditional E-value: 0.029
                 SEEEEEEETTSSEEEEEE CS
        WD40  12 svtslafspdgawlasGs 29 
                  vt++a+s d +++a+Gs
  KOO25373.1 113 TVTCVAVSEDDSLFAAGS 130
                 39*************998 PP

  == domain 2  score: 0.2 bits;  conditional E-value: 0.74
                 EEEEESSSSEEEEEEETTSSE..EEEEETTSEEEEE CS
        WD40   4 lrtltGHssvtslafspdgaw..lasGsdDgtvriW 37 
                 + ++++ s+v++++f   g+   l++G++ g  ++W
  KOO25373.1 149 VASFKAKSGVNAVCFAGVGKQtlLIAGCMTGDMHLW 184
                 667777777988876555555557889887777777 PP

  == domain 3  score: -2.6 bits;  conditional E-value: 5.5
                 EEEESSSSEEEEEEETTSSEEEEEET CS
        WD40   5 rtltGHssvtslafspdgawlasGsd 30 
                 +++ G   v+s+a    g+ la G+ 
  KOO25373.1 195 HKFIGN--VHSMAIGAGGTRLAVGGV 218
                 455565..999999999999999985 PP

  == domain 4  score: 4.5 bits;  conditional E-value: 0.033
                 SSEEEEEEETTSSEEEEEETTSEEEEE CS
        WD40  11 ssvtslafspdgawlasGsdDgtvriW 37 
                 + v+sl+ + d + l++G+d + v +W
  KOO25373.1 255 GTVNSLSLCADASVLCTGGDSKLVQLW 281
                 349****************88888888 PP

  == domain 5  score: 1.5 bits;  conditional E-value: 0.29
                 EESSSSEEEEEEETTSSEEEEEETTSE CS
        WD40   7 ltGHssvtslafspdgawlasGsdDgt 33 
                 ++  s v+sla sp  + la G+ D+t
  KOO25373.1 300 FRCSSTVYSLALSPRCDRLAVGTVDCT 326
                 555556****************99987 PP

  == domain 6  score: -1.4 bits;  conditional E-value: 2.4
                 EEEEETTSSEEEEEETTSEEEEEE CS
        WD40  15 slafspdgawlasGsdDgtvriWd 38 
                 ++afs++g+  + ++ D+ v ++d
  KOO25373.1 439 GVAFSQEGKIAV-AG-DQLVTVFD 460
                 689*******77.56.87776665 PP

  == domain 7  score: 1.4 bits;  conditional E-value: 0.3
                 EEEEEEETTSSEEEEEETTSEE CS
        WD40  13 vtslafspdgawlasGsdDgtv 34 
                 v+++a  + g+ ++ G+ D++v
  KOO25373.1 476 VRCCALTSTGSIVVVGGFDKKV 497
                 99***99999999999999998 PP

  == domain 8  score: 4.7 bits;  conditional E-value: 0.028
                 EEEESS.SSEEEEEEETTSSEEEEEET......TSEEEEEE CS
        WD40   5 rtltGH.ssvtslafspdgawlasGsd......DgtvriWd 38 
                  ++    +sv+s+  s d+++la Gs       +g v ++d
  KOO25373.1 509 SHFACAdDSVWSVHLSADSSLLAIGSGqttntaKGYVCLYD 549
                 555555456**************997323344477777666 PP

  == domain 9  score: 6.5 bits;  conditional E-value: 0.0073
                 S.SSEEEEEEETTSSEEEEEE CS
        WD40  10 H.ssvtslafspdgawlasGs 29 
                 H + v++++ spdg+ l++++
  KOO25373.1 571 HvKVVWCVRLSPDGTVLVAAD 591
                 65558************9764 PP

  == domain 10  score: -1.8 bits;  conditional E-value: 3.2
                 EEEEEETTSSEEEEEETTSEEEE CS
        WD40  14 tslafspdgawlasGsdDgtvri 36 
                 +++  + +g+ ++ G++D+ v +
  KOO25373.1 722 YGVGLDAHGQHMCVGGRDKMVAL 744
                 55556788999999****99866 PP

  == domain 11  score: 2.2 bits;  conditional E-value: 0.17
                 SEEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40  12 svtslafspdgawlasGsdDgtvriWd 38 
                  v++++  pd++ +a G++ +tv ++d
  KOO25373.1 808 TVWCISMLPDSSRMAVGGELPTVNVYD 834
                 49***************9999988887 PP

>> Ank_4  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.8   0.0         8   1.8e+04      35      47 ..     168     180 ..     158     182 .. 0.82
   2 !   11.3   0.1   0.00019      0.42      16      55 .]     906     947 ..     901     947 .. 0.86
   3 ?    5.7   0.1      0.01        24      16      47 ..     942     973 ..     939     981 .. 0.83

  Alignments for each domain:
  == domain 1  score: -3.8 bits;  conditional E-value: 8
       Ank_4  35 GetalhiAakrgn 47 
                  +t+l+ ++++g+
  KOO25373.1 168 KQTLLIAGCMTGD 180
                 6799******997 PP

  == domain 2  score: 11.3 bits;  conditional E-value: 0.00019
       Ank_4  16 lvrlLlek.gadinaqdnrsGetalhiAakrgn.veilklLl 55 
                 +vrl+l+   a +na+d++ G ++lh+++++ n  + l+lLl
  KOO25373.1 906 AVRLILDAhPAIVNARDPDTGASLLHFVISNANqARLLELLL 947
                 799999652788*******************95499998887 PP

  == domain 3  score: 5.7 bits;  conditional E-value: 0.01
       Ank_4  16 lvrlLlekgadinaqdnrsGetalhiAakrgn 47 
                 l++lLl     i +q+++ G+++lh A+  g+
  KOO25373.1 942 LLELLLGAQCLIGMQADAHGRSCLHAALEQGK 973
                 68888888888*****************8775 PP

>> Ank_2  Ankyrin repeats (3 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.7   0.2   1.5e-05     0.035      11      74 ..     905     982 ..     896     989 .. 0.73

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 1.5e-05
       Ank_2  11 elvklLl..egadpn..k..ngktaLhyAakngnl.eivklLleh.......adndgrtpLhyAarsghleivklLle 74 
                 ++v+l+l  + a +n  +  +g + Lh+ ++n n   +++lLl +       ad +gr+ Lh+A ++g  + ++ Lle
  KOO25373.1 905 HAVRLILdaHPAIVNarDpdTGASLLHFVISNANQaRLLELLLGAqcligmqADAHGRSCLHAALEQGKWRSLQQLLE 982
                 788888875333333332349******99998654377999997457888888899*********9998777777775 PP

>> DNA_ligase_A_N  DNA ligase N terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.2   2.9e-05     0.066     104     153 ..    1681    1730 ..    1669    1738 .. 0.84

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 2.9e-05
                      ------BHHHHHHHHHHHHH-STTHHHHHHHHHHHHHHHS-HHHHHHHHH CS
  DNA_ligase_A_N  104 akkspltieevnelLdklaaagkgsedekkkilkkllkraspeEakylir 153 
                       + +++t++++ e+L+++a++g +s++++k+il +l +r   eE + l+ 
      KOO25373.1 1681 HTGDDVTLRQLKEQLQQVAEEGASSRATQKRILVELSSRDVHEERRLLMQ 1730
                      67889**************99***************99977799988765 PP

>> WD40_like  WD40-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.7   0.0     0.014        32      10      57 ..     483     530 ..     477     539 .. 0.87
   2 ?    1.1   0.0     0.092   2.1e+02       2      30 ..     720     748 ..     719     756 .. 0.92
   3 ?    2.8   0.0     0.028        62       3      32 ..     768     797 ..     766     804 .. 0.90
   4 ?   -3.2   0.0       1.8     4e+03       3      34 ..     809     840 ..     807     843 .. 0.85

  Alignments for each domain:
  == domain 1  score: 3.7 bits;  conditional E-value: 0.014
   WD40_like  10 kkgslilyGgkddkctvlkleslesvsivesfedSvifvklldddlil 57 
                   gs++++Gg d+k+t+ ++  ++++s ++  +dSv  v l  d  +l
  KOO25373.1 483 STGSIVVVGGFDKKVTMHNVCAGTEMSHFACADDSVWSVHLSADSSLL 530
                 6799********************************988877666655 PP

  == domain 2  score: 1.1 bits;  conditional E-value: 0.092
   WD40_like   2 eiYsidiskkgslilyGgkddkctvlkle 30 
                  +Y + ++ +g+ + +Gg+d+ ++++++e
  KOO25373.1 720 RVYGVGLDAHGQHMCVGGRDKMVALYEIE 748
                 69***********************9986 PP

  == domain 3  score: 2.8 bits;  conditional E-value: 0.028
   WD40_like   3 iYsidiskkgslilyGgkddkctvlklesl 32 
                 +Y++ +s + ++ +yGg ++ + vl+ +++
  KOO25373.1 768 VYAVALSADLTYCAYGGTNKAVVVLDGRTG 797
                 8*******************9999987765 PP

  == domain 4  score: -3.2 bits;  conditional E-value: 1.8
   WD40_like   3 iYsidiskkgslilyGgkddkctvlklesles 34 
                 ++ i + +++s +++Gg+  ++ v++l ++  
  KOO25373.1 809 VWCISMLPDSSRMAVGGELPTVNVYDLANQRD 840
                 677888899999**************999865 PP

>> DUF707  Protein of unknown function (DUF707)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.1   6.1e-05      0.14     201     248 ..     748     795 ..     711     813 .. 0.85

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 6.1e-05
      DUF707 201 apvfsraaWrCvWhliqndlvhgwGlDlklgrCaqedrkkkvGvvDae 248
                  pv + +  + +W+ + +d+v++  l  +l++Ca + ++k v v+D +
  KOO25373.1 748 EPVGAEHNAKLIWTAVAEDFVYAVALSADLTYCAYGGTNKAVVVLDGR 795
                 577778888999********************************9975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1767 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       685  (0.0382063); expected 358.6 (0.02)
Passed bias filter:                      405  (0.0225891); expected 358.6 (0.02)
Passed Vit filter:                        51  (0.00284455); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.98u 0.29s 00:00:01.27 Elapsed: 00:00:00.49
# Mc/sec: 10736.33
//
Query:       KOO25374.1  [L=327]
Description: hypothetical protein Ctob_013211 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.3e-05   23.5   0.0    3.1e-05   23.0   0.0    1.1  1  DAGAT            Diacylglycerol acyltransferase
    0.00069   19.2   0.0     0.0062   16.2   0.0    2.1  1  Acyltransferase  Acyltransferase


Domain annotation for each model (and alignments):
>> DAGAT  Diacylglycerol acyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.0   0.0   3.5e-09   3.1e-05     126     257 ..     144     270 ..     128     285 .. 0.82

  Alignments for each domain:
  == domain 1  score: 23.0 bits;  conditional E-value: 3.5e-09
       DAGAT 126 sresieyvLdkeekGravvlvvGGaeealeahpgketltLkkrkGfvkialktGadLvPvysfGendvykqv.enpkgsklrkvqeklkkvlglsppil 223
                 s     ++L   ++G++v+l +GGa+e ++ + +  +l+       v++a +  a++vP    G ++ +  + + ++ + +  v + +k+ +   p ++
  KOO25374.1 144 SA---RSLLGALQRGESVLLFPGGAREVFKRKGEDYALFWGDEPDIVRLAARVNATIVPFSGLGGDESFTMAlDSEELLAMPAVGDFFKQRIEALPSLV 239
                 44...456677778888************************************************999987615666678899**************** PP

       DAGAT 224 yGrglfnsltlGllPfrkpittvvGkPievtkte 257
                  G  +f  + +G++   +      G+Pi+   ++
  KOO25374.1 240 PG-DIFV-PPFGYISPARH-YFLFGRPIDLRGVD 270
                 **.8999.679*9854443.35789999876554 PP

>> Acyltransferase  Acyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.0   6.9e-07    0.0062      11     132 ..      73     200 ..      61     202 .. 0.74

  Alignments for each domain:
  == domain 1  score: 16.2 bits;  conditional E-value: 6.9e-07
  Acyltransferase  11 pekgpailvaNHqsy.lDvlllwlllyksngprnvviiakkellsipllgflmr..llgfifidRksnaraagsleniselleegklvviFPEG 101
                        ++p+++v NHq y +D +ll   l +++g+r + ++    l++   l ++     + +  ++R   + +  s   ++ +l++g+ v++FP G
       KOO25374.1  73 TDGRPVLFVGNHQLYgFDGPLLVEELLRERGRRLRPMVFPPLLAKESPLAPFPYplPGTAETFER--FGATPVSARSLLGALQRGESVLLFPGG 164
                      3489******************9888677776555555555555555555555523444555666..8888888899999************** PP

  Acyltransferase 102 .....trsregel..lpfkkGlvrlaakakkgvpivPv 132
                           +r+ e +   +     +vrlaa++  + +ivP+
       KOO25374.1 165 arevfKRKGEDYAlfWGDEPDIVRLAARV--NATIVPF 200
                      776655555544457888999******99..9999997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (327 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       268  (0.0149478); expected 358.6 (0.02)
Passed bias filter:                      256  (0.0142785); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.43u 0.28s 00:00:00.71 Elapsed: 00:00:00.42
# Mc/sec: 2341.45
//
Query:       KOO25375.1  [L=700]
Description: patatin-like phospholipase domain-containing protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.3e-23   83.2   0.1    2.5e-23   82.3   0.1    1.4  1  DUF3336   Domain of unknown function (DUF3336)
    1.4e-16   61.3   1.4    6.7e-15   55.8   0.0    3.1  3  Patatin   Patatin-like phospholipase


Domain annotation for each model (and alignments):
>> DUF3336  Domain of unknown function (DUF3336)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   82.3   0.1   2.8e-27   2.5e-23       9     122 ..      62     176 ..      55     194 .. 0.92

  Alignments for each domain:
  == domain 1  score: 82.3 bits;  conditional E-value: 2.8e-27
     DUF3336   9 kklrkklrkattYeeWkeaAkeLDellgndeWkendes.yYdyklvkkvlkkLrklrekedlkellellrtclkrNfagienprLYsetyiGTKkliee 106
                 ++   +l++a+tY eW + A+  D+ +g d+W+   +s  Yd++ v+  +++Lr +re  d+++l++ l + lk+N  g  + +LY++++ GTK+lie 
  KOO25375.1  62 RRRDATLEEASTYSEWLALAELADAEEGRDAWRDLSSSkDYDWRHVQVSTQRLRAAREAGDITALMQQLLPLLKHNAFGELEYSLYTRARAGTKRLIEA 160
                 45567899******************************************************************************************* PP

     DUF3336 107 Yidevekalellaetk 122
                 Y de+ ++l+ la+  
  KOO25375.1 161 YRDELCESLRALATRA 176
                 ************8764 PP

>> Patatin  Patatin-like phospholipase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.1   0.3     0.021   1.8e+02      37     121 ..      34     154 ..      33     199 .. 0.59
   2 !   55.8   0.0   7.5e-19   6.7e-15       1     200 [.     205     406 ..     205     408 .. 0.82
   3 ?   -0.1   0.0       0.1   9.1e+02      71     167 ..     527     625 ..     492     671 .. 0.56

  Alignments for each domain:
  == domain 1  score: 2.1 bits;  conditional E-value: 0.021
     Patatin  37 GAiia.......................................lllalgrdpaalvddlrnlllnkifdrdllirelaanlaarlsgllgkgglfdae 96 
                 GA+ia                                       l+la   d+++ +d++r+l ++k+ d+            + + +l+  +   d +
  KOO25375.1  34 GAVIAlelalyvlvrlairfiaafsfrerrrdatleeastysewLALAELADAEEGRDAWRDLSSSKDYDWRH--------VQVSTQRLRAAREAGDIT 124
                 66666666666666666666666667777777777777777777889999999999************99993........333333333333333333 PP

     Patatin  97 alrellr.....kvladktlkrlsarlgkl 121
                 al + l       ++++++++ +++++++ 
  KOO25375.1 125 ALMQQLLpllkhNAFGELEYSLYTRARAGT 154
                 333333323324445555555555555555 PP

  == domain 2  score: 55.8 bits;  conditional E-value: 7.5e-19
     Patatin   1 LvlsGGGsrgafslgalkaLkkelgerfdiisGtSaGAiialllalgrdpaalvddlrnlllnkifdrdllirelaanlaarlsgllgkgglfdaealr 99 
                 L lsGG   g+f++g++kaL  ++   +++++G+SaGA++a  + + r++++l+  + +  +   ++        +    +   + l++g+++d   + 
  KOO25375.1 205 LMLSGGALFGVFHFGVVKAL-VDERLLPTVVCGASAGAVVA-SIVCSRSDDELRHLMHDKSDLYREMGS--HGPFFGTTLWKIQRVLTRGRIYDFALWH 299
                 7899****************.********************.666777777777777776666666666..6777888888999999999999999999 PP

     Patatin 100 ellrkvladktlkrlsarlgklpllkslftanqavpaittataatastanranglytedddddvdladavraSsafPglfppvsl......dge..... 187
                 + ++ +  ++t+k++ ++ g++              +++t t+++   +  a  l+++ +++ vd+a+av+aS+ +P+l++pv l      dg+     
  KOO25375.1 300 KHMKWFSLGLTFKEAFEKTGRV--------------LNITCTPVRSRGRRAAPLLLNHLTAPHVDIASAVCASACVPLLIEPVVLlekspiDGKlrkya 384
                 9999889999**********99..............799*****************************************9998856555533333333 PP

     Patatin 188 .........lyvDGGilsNvPi 200
                           y DG+  s vPi
  KOO25375.1 385 spdddddciCYRDGSYESDVPI 406
                 3333345566677776666665 PP

  == domain 3  score: -0.1 bits;  conditional E-value: 0.1
     Patatin  71 lirelaanlaarlsgllgkgglfdaealrellrkvladktlkrlsarlgklpllks....lftanqavpaittataatastanranglytedddddvdl 165
                 l  ++  +  a + g+   ++  d++a+ + l+  +++ + +   ++++++ ++k+    + +  ++++   ++   + +  n+   +y  d+d+++++
  KOO25375.1 527 LNAKMRGMERATWEGMGLIRTRMDVDAALSALE--VDEFEADANRKPRKRPVGSKRrkptPSKSGSMALDEGDIDGDMDENVNFVSYDYFSDEDENAPV 623
                 344455566666666666677777777777777..7777777777777777777778888444444444444444444444444444444444444444 PP

     Patatin 166 ad 167
                  +
  KOO25375.1 624 QQ 625
                 33 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (700 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       508  (0.028334); expected 358.6 (0.02)
Passed bias filter:                      351  (0.0195772); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.60u 0.24s 00:00:00.84 Elapsed: 00:00:00.41
# Mc/sec: 5122.06
//
Query:       KOO25376.1  [L=190]
Description: hypothetical protein Ctob_013209 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
     0.0073   16.2   0.1      0.014   15.3   0.1    1.5  1  Phage_Coat_B  Phage Coat protein B


Domain annotation for each model (and alignments):
>> Phage_Coat_B  Phage Coat protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.1     8e-07     0.014      24      81 ..      37      95 ..      18      97 .. 0.74

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 8e-07
  Phage_Coat_B 24 gsvtaassl.pvfaasvidtsavesaitd...gksdmkaiggyivgalvilavagliysmlr 81
                  g++t  ++l p+f a v+d     sa+ +   g   + +i g++vg  + +a  gl+  +l+
    KOO25376.1 37 GAIT--TTLpPAF-AEVVDNPYAPSAVQQsggGDDVIGNIMGFVVGGAINVAFVGLLLFILK 95
                  4443..4451677.9****98888887642113444789*****************988876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (190 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       535  (0.0298399); expected 358.6 (0.02)
Passed bias filter:                      353  (0.0196888); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.21s 00:00:00.60 Elapsed: 00:00:00.37
# Mc/sec: 1546.46
//
Query:       KOO25377.1  [L=1007]
Description: protein kinase domain containing protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.3e-59  200.4   0.0    4.7e-59  199.9   0.0    1.2  1  Pkinase         Protein kinase domain
    4.3e-27   95.0   0.0    6.6e-27   94.4   0.0    1.2  1  Pkinase_Tyr     Protein tyrosine kinase
    2.4e-19   70.0   0.0    3.9e-19   69.2   0.0    1.2  1  DUF1741         Domain of unknown function (DUF1741)
    1.7e-07   30.4   0.0    2.6e-07   29.8   0.0    1.2  1  Pkinase_fungal  Fungal protein kinase
      5e-05   22.8   0.0    8.3e-05   22.0   0.0    1.3  1  Kinase-like     Kinase-like
    0.00035   20.6   0.0    0.00035   20.6   0.0    4.3  5  APH             Phosphotransferase enzyme family


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  199.9   0.0   1.6e-62   4.7e-59       4     264 .]      43     301 ..      40     301 .. 0.89

  Alignments for each domain:
  == domain 1  score: 199.9 bits;  conditional E-value: 1.6e-62
                 EEEEEEESSEEEEEEEETTTTEEEEEEEEECHCHCHHHH..HHHHHHHHHHHHHS.CTTB--EEEEEEESSEEEEEEE--TTEBHHHHHHHHSS--HHH CS
     Pkinase   4 leklGeGsfGkVykaveketgkivAvKkikkekakkkke..kkvlrEikilkklk.hpnivrlyevfeekdelylvleyveggeladllerkgslseee 99 
                  + +GeGsfG+V  +  +++  + A  ++ k  +  +++  ++++rE++ilk +  h++i+r+++v e+++  ylvl+ + ggel+d+++ +++l+e+e
  KOO25377.1  43 TTPIGEGSFGTVHVCSASHNATKTAKMRVCKAVRLPTSHdrEDFRREVRILKACGeHKHICRIVDVAEDTRFGYLVLQACTGGELFDRIN-SRKLDERE 140
                 568*********9999888777777655555555444444577**********************************************8.689***** PP

                 HHHHHHHHHHHHHHHHHTTEE-SS-SGGGEEEETTTE....EEE-SGTTSEESSSSCS.BCTTTSCGGGS-HHHHTTSCBSHHHHHHHHHHHHHHHHHS CS
     Pkinase 100 akkiakqilegleylHskgiiHrDlKpeNiLidekge....lKitDFGlakelesssk.ltsfvgtseYlAPEvlkeneyskkvDvWslGvilyelltg 193
                 a k ++ +l++l++l +k+i+HrD+KpeN++++ + +    l ++DFG+a++le +s+ lt+++gt  Y APEvl + +ys ++D+WslGv+   +ltg
  KOO25377.1 141 AAKACADVLSALSFLRAKRIVHRDIKPENLMYK-DMQpgspLLLIDFGFATQLEYESRrLTEICGTAAYTAPEVL-RGDYSLACDMWSLGVVAHVILTG 237
                 *********************************.3333679*************99999****************.668******************** PP

                 S-STTTSSHHHHHHHHHHTHHHHHHHCTSHH...HHHTTS-HHHHHHHHHHT-SSGCCSTTHHHHHTSGGG CS
     Pkinase 194 kppfsgekgkekvekeldqlekilkilgetkeklpeaseiseeakdllkkllkkdpkkRltaeellqhpyl 264
                 k pf+g++++ek +++l++++ ++          +++ ++s+ akd+++kll+ d+++R++ + +lqhp++
  KOO25377.1 238 KLPFNGRNDDEKEARILRHTVLSFA-------GARTWGTVSDAAKDFIQKLLNPDEHTRMGTRAALQHPWI 301
                 *****99999988888888333332.......457899********************************7 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   94.4   0.0   2.2e-30   6.6e-27       6     218 ..      45     253 ..      41     289 .. 0.87

  Alignments for each domain:
  == domain 1  score: 94.4 bits;  conditional E-value: 2.2e-30
                  EEEEESSEEEEEEEEETTTTSSEEEEEEEEESTTSSHHHHHHHHHHHHHHHTS.-BTTB--EEEEEESSSSEEEEEE--TTEBHHHHHHHTCTTTSBH CS
  Pkinase_Tyr   6 klGeGafGkVvegtlkgekekkevkVavKtlkeeateeekeelleeakimkkl.khpnivkllgvctkeepllivteyvkgGdLlkfLrkkekekltl 102
                   +GeG+fG+V+ ++++++ +k+    + K ++  ++++ +e++ +e++i+k++ +h++i +++ v  +++  ++v++ ++gG+L + ++++   kl+ 
   KOO25377.1  45 PIGEGSFGTVHVCSASHNATKTAKMRVCKAVRLPTSHD-REDFRREVRILKACgEHKHICRIVDVAEDTRFGYLVLQACTGGELFDRINSR---KLDE 138
                  69**************7665555555668886666665.9**********************************************99998...9*** PP

                  HHHHHHHHHHHHHHHHHHHTTEEEST-SGGGEEEEE...TTEEEE-STTTHEETTTSSEEEETTSSTSGGGGS-HHHHHHSEEEHHHHHHHHHHHHHH CS
  Pkinase_Tyr 103 kdllsfalqvAkGmeyLeskklvHrdlaarNvLlse...nkvvkisDfGLardiekddeyvkkeeaklpvkWmapEslkekkftsksDvWsfGvllwE 197
                  ++  + +++v +++++L +k++vHrd+   N + ++   ++   + DfG a ++  + e ++ +e      ++apE+l+ + ++ + D+Ws Gv+ + 
   KOO25377.1 139 REAAKACADVLSALSFLRAKRIVHRDIKPENLMYKDmqpGSPLLLIDFGFATQL--EYESRRLTEICGTAAYTAPEVLR-GDYSLACDMWSLGVVAHV 233
                  **********************************996666689999********..333344555567899******97.67***************9 PP

                  HHTTSSGTTTTSHHHHHHHHH CS
  Pkinase_Tyr 198 iftlgespypglkneevlekl 218
                  i+t g+ p++g ++ e  +++
   KOO25377.1 234 ILT-GKLPFNGRNDDEKEARI 253
                  999.*****999777766655 PP

>> DUF1741  Domain of unknown function (DUF1741)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.2   0.0   1.3e-22   3.9e-19      13     137 ..     789     919 ..     780     959 .. 0.83

  Alignments for each domain:
  == domain 1  score: 69.2 bits;  conditional E-value: 1.3e-22
     DUF1741  13 dfinhnLrk.rldvelytlalgillrllsylkrskvRLay.hWselwraLlslvrflttyasdlkskpqidtlldslvnllalfisaGdtfLpdpasYd 109
                   ++ nLr+ +++  ly +al++l+rl+  ++r ++ L+  +W+elw aL+++++f+ + +  +++     ++  ++++++++ ++ Gd++Lp++++++
  KOO25377.1 789 MLLTQNLRRaSFHPPLYVQALTLLQRLMIAQHRAQTTLPLlKWEELWAALFTVADFISNDDVFMQR--GAPEVGLRVLEVINVLVTLGDAILPSASHFE 885
                 56899**763799**************************98****************988777776..99***************************** PP

     DUF1741 110 dLfYklvetgevltkfrdlyklalras.........v 137
                    Y+lv+ +     f++ly++a+++          +
  KOO25377.1 886 SFAYELVRRHR---TFEKLYRVARQQAphlvkalslA 919
                 ***********...9******9976655555444440 PP

>> Pkinase_fungal  Fungal protein kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.8   0.0   8.8e-11   2.6e-07     305     388 ..     138     216 ..     125     232 .. 0.87

  Alignments for each domain:
  == domain 1  score: 29.8 bits;  conditional E-value: 8.8e-11
  Pkinase_fungal 305 pkellealrDaIkghrsLflkagiLHrDiSenNilitdskkegerkglLiDLDlakelsddssesgarertGTleFmaievlkg 388
                      +e+ +a++D++ ++  L   ++i+HrDi  +N++    + +++   lLiD+ +a++l+ +s++    e  GT+++ a evl+g
      KOO25377.1 138 EREAAKACADVLSALSFLR-AKRIVHRDIKPENLMYK--DMQPGSPLLLIDFGFATQLEYESRRL--TEICGTAAYTAPEVLRG 216
                     678889************9.***************99..5678999*************755554..689************95 PP

>> Kinase-like  Kinase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.0   0.0   2.8e-08   8.3e-05     143     286 ..     143     287 ..     121     289 .. 0.69

  Alignments for each domain:
  == domain 1  score: 22.0 bits;  conditional E-value: 2.8e-08
  Kinase-like 143 tiarlllTlqlirlaanLqakglvhgkftvdnllld...ekgglmlggftaLvragtkv.vlseve..kgfaPpEllgsrggytrknktkmthkldaW 234
                  +++  +     +     L+ak +vh +++++nl+++   +  +l l +f+   +   +  +l e++  +++  pE+l             ++ + d W
   KOO25377.1 143 KACADV-----LSALSFLRAKRIVHRDIKPENLMYKdmqPGSPLLLIDFGFATQLEYESrRLTEICgtAAYTAPEVLRG----------DYSLACDMW 225
                  333333.....4446789*****************72223458999999876665544404488888899999999865..........6999***** PP

  Kinase-like 235 qlGlviyriwclklPltlateeakeew.......kfklck...kipekvkaLlkkfLqlsqe 286
                   lG+v+  i   klP++   ++ ke+        +f   +    ++++ k  ++k+L+++++
   KOO25377.1 226 SLGVVAHVILTGKLPFNGRNDDEKEARilrhtvlSFAGARtwgTVSDAAKDFIQKLLNPDEH 287
                  *****************999988888755556654433332235666666666666666665 PP

>> APH  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.7   0.0   0.00025      0.74      27     106 ..      77     153 ..      62     157 .. 0.71
   2 !   20.6   0.0   1.2e-07   0.00035     151     197 ..     140     190 ..     134     191 .. 0.79
   3 ?   -2.6   0.8       1.4   4.1e+03      87     125 ..     546     583 ..     462     633 .. 0.58
   4 ?   -1.7   0.9      0.75   2.2e+03      92     161 ..     676     744 ..     672     754 .. 0.69
   5 ?   -2.5   2.5       1.3   3.8e+03      46     125 ..     767     838 ..     761    1002 .. 0.75

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 0.00025
                 EE-TTS-HHHHHHHHHHHHHHHHTT-B--B-CTTBS-EEETTEEEEEEE----EE-SS.HHHHHHHHHHHHHHHHHHCCHH CS
         APH  27 rnpparaaeeirrevallrlLakagvpvPevlagdtddeeigllfalieyvpgrsllr.klsaaqlpellealgeflaalh 106
                 ++ +++  e++rrev++l++  ++ +++ ++++  +d  + +l+ ++ ++  g+ ++r +    + +e++ a++++l al+
  KOO25377.1  77 LP-TSHDREDFRREVRILKACGEH-KHICRIVDVAEDTRFGYLVLQACTG--GELFDRiNSRKLDEREAAKACADVLSALS 153
                 33.336999***********9999.67******66666666654444444..66666696666677778888888888775 PP

  == domain 2  score: 20.6 bits;  conditional E-value: 1.2e-07
                 HHHHHHHHH--S...SS-EEEE-SS-SGGGEEEC.....TTEEEEE---TT-E CS
         APH 151 qvlaalaallpg...elptvllHgDlhpgNllvd...pddgrvtGviDfedag 197
                 +++ a+a+ l +     +++++H+D++p Nl+ +   p+ + +  +iDf++a+
  KOO25377.1 140 EAAKACADVLSAlsfLRAKRIVHRDIKPENLMYKdmqPGSPLL--LIDFGFAT 190
                 245555555555677899*****************99999999..******97 PP

  == domain 3  score: -2.6 bits;  conditional E-value: 1.4
                 HHHHHHHHHHHHHHHHCCHHCH.-STTTB-SHHCHTCCH CS
         APH  87 saaqlpellealgeflaalhqvdpaalpladflaqdlel 125
                   a++  ++e+++ +l  l +   ++ ++ +fl++  + 
  KOO25377.1 546 ASAVATSAVEDAALLLVLLAAY-RRHERPNGFLRVVTDA 583
                 3444555555555555555555.4444444444444333 PP

  == domain 4  score: -1.7 bits;  conditional E-value: 0.75
                 HHHHHHHHHHHCCHHCH.-STTTB-SHHCHTCCHHHHHHCHHHCCCGCCTCCHHHHHHHHHHHHHHHH-- CS
         APH  92 pellealgeflaalhqvdpaalpladflaqdlellrqlesatarllaselldlleeleeqvlaalaallp 161
                 p+ ++ l+e+ a++ +v++a  + + ++a  l++l  ++s  a++ + +ll  +++l+  v++++++ + 
  KOO25377.1 676 PRGGATLAELCAQMDAVPAALGGGSARGAL-LRHLFSVASLLACDARDALLVAQLRLALLVIERVLDGAK 744
                 667788999999999997777777777765.888888888888444444444355555556766666555 PP

  == domain 5  score: -2.5 bits;  conditional E-value: 1.3
                 HHHHTT-B--B-CTTBS-EEETTEEEEEEE----EE-SSHHHHHHHHHHHHHHHHHHCCHHCH.-STTTB-SHHCHTCCH CS
         APH  46 lLakagvpvPevlagdtddeeigllfalieyvpgrsllrklsaaqlpellealgeflaalhqvdpaalpladflaqdlel 125
                 ++ ++ +p P++l    +++  +l ++l + +  +s+++    +   ++l  l ++  a h++ +++lpl  +++ +++l
  KOO25377.1 767 HITDRQLPSPQPLL---GGAYTLLAMLLTQNLRRASFHP----PLYVQALTLLQRLMIAQHRA-QTTLPLLKWEELWAAL 838
                 56666677777777...5555566777777777777777....55556677777777777777.6667777777655544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1007 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       533  (0.0297284); expected 358.6 (0.02)
Passed bias filter:                      383  (0.021362); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.72u 0.29s 00:00:01.01 Elapsed: 00:00:00.45
# Mc/sec: 6794.60
//
Query:       KOO25378.1  [L=1379]
Description: kelch repeat [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.5e-11   44.3   0.1      0.015   15.6   0.0    4.6  4  Kelch_3    Galactose oxidase, central domain
    3.3e-09   36.6   3.8       0.22   11.6   0.0    5.4  5  Kelch_4    Galactose oxidase, central domain
    4.9e-09   36.0   2.8      0.019   15.0   0.0    4.9  5  Kelch_5    Kelch motif
    6.5e-08   31.9   0.4    0.00016   21.3   0.0    3.7  3  EF-hand_6  EF-hand domain
    8.9e-07   28.0   0.2     0.0012   18.2   0.0    3.1  2  EF-hand_1  EF hand
    9.2e-06   24.9   1.1      0.005   16.3   0.1    3.0  2  EF-hand_5  EF hand
    2.2e-05   24.8   0.0    7.5e-05   23.1   0.0    1.9  1  EF-hand_7  EF-hand domain pair
     0.0012   18.6   0.2     0.0051   16.6   0.1    2.2  2  EF-hand_8  EF-hand domain pair
     0.0065   16.7   0.1        3.4    8.1   0.0    4.0  5  Kelch_6    Kelch motif
  ------ inclusion threshold ------
       0.32   11.1   2.0       0.83    9.7   0.0    2.9  4  Kelch_2    Kelch motif


Domain annotation for each model (and alignments):
>> Kelch_3  Galactose oxidase, central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.1       1.9   3.4e+03       4      13 ..      40      50 ..      38      58 .. 0.72
   2 !   15.6   0.0   8.1e-06     0.015       4      48 ..      99     154 ..      96     155 .. 0.73
   3 !    9.0   0.0   0.00094       1.7       1      47 [.     268     319 ..     268     321 .. 0.71
   4 !   13.8   0.0   2.9e-05     0.052       3      48 ..     333     395 ..     331     396 .. 0.77

  Alignments for each domain:
  == domain 1  score: -1.5 bits;  conditional E-value: 1.9
     Kelch_3  4 lyifGGlgd.d 13
                +++fGGl++  
  KOO25378.1 40 ALLFGGLRPgF 50
                79*****9752 PP

  == domain 2  score: 15.6 bits;  conditional E-value: 8.1e-06
     Kelch_3   4 lyifGGlgd.......dgqdrlndvyvydldtntWaei.....aslppaRaghaata 48 
                 + ifGG+ +       ++ ++ nd++++ l  +++a       + +p++R++h+++a
  KOO25378.1  99 IIIFGGEKAndggrdgGRSECINDTWLIRLR-DEFAAPviaeeGMPPTPRMHHSLSA 154
                 6677777777776754778888********7.7777444543244677******997 PP

  == domain 3  score: 9.0 bits;  conditional E-value: 0.00094
     Kelch_3   1 gdrlyifGGlgddgqdrlndvyvydldtntWa.....eiaslppaRaghaat 47 
                 g r+ +fGG++++g+ ++ +  ++++d++t++      ++++p +R+ haa 
  KOO25378.1 268 GKRVILFGGRCAQGTLHVASDALVSFDSETIDaaplqALGRPPAPRYAHAAL 319
                 57899******9888877444445666666664433155**********986 PP

  == domain 4  score: 13.8 bits;  conditional E-value: 2.9e-05
     Kelch_3   3 rlyifGGlgddgqdrlndvyvydldtntWaei............aslpp.......aRaghaata 48 
                  ++++GG +  g++ ++d++v+ l +  Wa +            a+++p        R++h+++a
  KOO25378.1 333 AMLVHGGQD--GGKLHGDLFVLHLPSLCWAPLalpsphaatpadARPTPaairalfVRYSHSLCA 395
                 599******..*******************77676666555544333336788888888888886 PP

>> Kelch_4  Galactose oxidase, central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.1   0.1      0.23     4e+02       1      21 [.      25      46 ..      25      50 .. 0.82
   2 !   11.6   0.0   0.00012      0.22       2      34 ..      85     126 ..      84     131 .. 0.89
   3 ?    1.5   0.1      0.17     3e+02       1      20 [.     146     169 ..     146     176 .. 0.83
   4 !    9.7   0.0   0.00048      0.86       4      27 ..     261     283 ..     259     294 .. 0.83
   5 !    8.2   0.0    0.0014       2.5      16      45 ..     335     365 ..     328     372 .. 0.86

  Alignments for each domain:
  == domain 1  score: 1.1 bits;  conditional E-value: 0.23
     Kelch_4  1 pRaghsatsi.pdgtiylfGGr 21
                +R gh++++   +    lfGG 
  KOO25378.1 25 AREGHTCFYSrERHAALLFGGL 46
                5779******55589******7 PP

  == domain 2  score: 11.6 bits;  conditional E-value: 0.00012
     Kelch_4   2 Raghsatsi.pdgtiylfGGrgedg........tllndlyll 34 
                 R++h+a        i++fGG+ +++        ++ nd++l+
  KOO25378.1  85 RCYHGAALHeATQQIIIFGGEKANDggrdggrsECINDTWLI 126
                 8999999995559***********99**************96 PP

  == domain 3  score: 1.5 bits;  conditional E-value: 0.17
     Kelch_4   1 pRaghsatsi..pdg..tiylfGG 20 
                 pR++hs+ ++  ++g  ++++ GG
  KOO25378.1 146 PRMHHSLSAVdlGNGafRVVVLGG 169
                 9*******9976665788888888 PP

  == domain 4  score: 9.7 bits;  conditional E-value: 0.00048
     Kelch_4   4 ghsatsipdgtiylfGGrgedgtl 27 
                  hsa++ +  +++lfGGr ++gtl
  KOO25378.1 261 AHSACVEG-KRVILFGGRCAQGTL 283
                 59999996.7***********954 PP

  == domain 5  score: 8.2 bits;  conditional E-value: 0.0014
     Kelch_4  16 ylfGGrgedgtllndlylldlstntWrrl..g 45 
                  ++GG+ + g+l++dl++l l++  W +l  +
  KOO25378.1 335 LVHGGQDG-GKLHGDLFVLHLPSLCWAPLalP 365
                 58******.69***********9999998653 PP

>> Kelch_5  Kelch motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.0       5.7     1e+04       8      22 ..      29      45 ..      25      47 .. 0.61
   2 ?    3.5   0.0     0.041        73       6      25 ..      86     107 ..      83     124 .. 0.81
   3 ?    5.2   0.0     0.012        21       2      25 ..     144     172 ..     143     180 .. 0.82
   4 !    8.4   0.0    0.0012       2.1       4      23 ..     258     277 ..     257     291 .. 0.82
   5 !   15.0   0.0     1e-05     0.019       2      41 ..     310     356 ..     309     357 .. 0.84

  Alignments for each domain:
  == domain 1  score: -3.3 bits;  conditional E-value: 5.7
     Kelch_5  8 hcavtvs..ekiYvyGG 22
                h  ++    +  +++GG
  KOO25378.1 29 HTCFYSRerHAALLFGG 45
                55554433466899999 PP

  == domain 2  score: 3.5 bits;  conditional E-value: 0.041
     Kelch_5   6 aghcavtvs..ekiYvyGGkvg 25 
                  +h a+ ++  ++i+++GG ++
  KOO25378.1  86 CYHGAALHEatQQIIIFGGEKA 107
                 5788999888999******886 PP

  == domain 3  score: 5.2 bits;  conditional E-value: 0.012
     Kelch_5   2 PppRaghcavtvs.....ekiYvyGGkvg 25 
                 P+pR++h+  +v+     + + v GG+ +
  KOO25378.1 144 PTPRMHHSLSAVDlgngaFRVVVLGGVRS 172
                 9***********77666788999999875 PP

  == domain 4  score: 8.4 bits;  conditional E-value: 0.0012
     Kelch_5   4 pRaghcavtvsekiYvyGGk 23 
                  R+ h+a++ +  ++++GG+
  KOO25378.1 258 ERYAHSACVEGKRVILFGGR 277
                 59*****************8 PP

  == domain 5  score: 15.0 bits;  conditional E-value: 1e-05
     Kelch_5   2 PppRaghcavtvs...ek......iYvyGGkvgrdgsvsddvyvLdlps 41 
                 P+pR+ h+a  v+   +       ++v+GG +g  g++ +d++vL lps
  KOO25378.1 310 PAPRYAHAALLVGsadGLvwparaMLVHGGQDG--GKLHGDLFVLHLPS 356
                 9*********99644433666666********6..*************8 PP

>> EF-hand_6  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.4   0.0      0.47   8.4e+02      17      28 ..     664     675 ..     662     682 .. 0.84
   2 !   21.3   0.0     9e-08   0.00016       4      28 ..     933     957 ..     931     969 .. 0.90
   3 ?    5.4   0.1     0.011        20       8      23 ..     970     985 ..     963     987 .. 0.86

  Alignments for each domain:
  == domain 1  score: 0.4 bits;  conditional E-value: 0.47
   EF-hand_6  17 idaeElrkalrk 28 
                 ++++El+++l++
  KOO25378.1 664 VTPKELQQVLTT 675
                 799*******96 PP

  == domain 2  score: 21.3 bits;  conditional E-value: 9e-08
   EF-hand_6   4 eaFklfDkdgdGkidaeElrkalrk 28 
                 eaF ++Dkdg G+i+ eElr++l+k
  KOO25378.1 933 EAFGMLDKDGGGSISVEELRRMLSK 957
                 89*********************97 PP

  == domain 3  score: 5.4 bits;  conditional E-value: 0.011
   EF-hand_6   8 lfDkdgdGkidaeElr 23 
                 + D +gdG++ ++E++
  KOO25378.1 970 IVDASGDGELQIDEFK 985
                 6799***********8 PP

>> EF-hand_1  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.2   0.0   6.7e-07    0.0012       4      28 ..     933     957 ..     932     958 .. 0.94
   2 !    6.4   0.0     0.004       7.2       8      24 ..     970     986 ..     963     987 .. 0.85

  Alignments for each domain:
  == domain 1  score: 18.2 bits;  conditional E-value: 6.7e-07
                 HHHHHHTTTSSSEEEHHHHHHHHHH CS
   EF-hand_1   4 eiFrefDkDgdGkIdfeEfkellkk 28 
                 e+F ++DkDg G I+ eE++++l+k
  KOO25378.1 933 EAFGMLDKDGGGSISVEELRRMLSK 957
                 89********************987 PP

  == domain 2  score: 6.4 bits;  conditional E-value: 0.004
                 HHTTTSSSEEEHHHHHH CS
   EF-hand_1   8 efDkDgdGkIdfeEfke 24 
                 ++D  gdG + ++Efk+
  KOO25378.1 970 IVDASGDGELQIDEFKR 986
                 79*************95 PP

>> EF-hand_5  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.1   2.8e-06     0.005       2      25 .]     933     955 ..     932     955 .. 0.90
   2 !    6.1   0.1    0.0047       8.5       8      23 ..     971     986 ..     970     988 .. 0.92

  Alignments for each domain:
  == domain 1  score: 16.3 bits;  conditional E-value: 2.8e-06
                 HHHHHHH-SS-SSCE-HHHHHHHH CS
   EF-hand_5   2 kdtFqaiDlNgDGkIskeELktlv 25 
                 ++ F ++D++g G Is+eEL++++
  KOO25378.1 933 EA-FGMLDKDGGGSISVEELRRML 955
                 56.9*****************975 PP

  == domain 2  score: 6.1 bits;  conditional E-value: 0.0047
                 H-SS-SSCE-HHHHHH CS
   EF-hand_5   8 iDlNgDGkIskeELkt 23 
                 +D+ gDG + ++E+k+
  KOO25378.1 971 VDASGDGELQIDEFKR 986
                 7999**********97 PP

>> EF-hand_7  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.1   0.0   4.2e-08   7.5e-05       6      67 ..     933     985 ..     931     987 .. 0.90

  Alignments for each domain:
  == domain 1  score: 23.1 bits;  conditional E-value: 4.2e-08
   EF-hand_7   6 eaFkelDtdgdgyldkeellrllrkifqgagegsklsdeelellfkefDtdkdGvisfdEFl 67 
                 eaF +lD+dg g++++eel+r+l          +++s++ + + +  +D ++dG++  dEF+
  KOO25378.1 933 EAFGMLDKDGGGSISVEELRRMLS---------KSVSEDDVSRAVGIVDASGDGELQIDEFK 985
                 6899****************8887.........5667788999******************7 PP

>> EF-hand_8  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.0       2.5   4.5e+03       5      27 ..     664     684 ..     661     687 .. 0.79
   2 !   16.6   0.1   2.9e-06    0.0051       2      49 ..     943     985 ..     942     989 .. 0.90

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 2.5
   EF-hand_8   5 Itreelrrilrilglkkglseee 27 
                 +t+ el+  l+++  k  l +ee
  KOO25378.1 664 VTPKELQQVLTTIERK--LDAEE 684
                 8999****88777666..88887 PP

  == domain 2  score: 16.6 bits;  conditional E-value: 2.9e-06
   EF-hand_8   2 kgkItreelrrilrilglkkglseeevdilfrefDtdgdGkisfeEFc 49 
                 +g+I++eelrr+l      k++se++v   +  +D  gdG +  +EF 
  KOO25378.1 943 GGSISVEELRRML-----SKSVSEDDVSRAVGIVDASGDGELQIDEFK 985
                 79*********55.....456**************************7 PP

>> Kelch_6  Kelch motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.2   0.0      0.14   2.4e+02       2      22 ..      85     107 ..      84     125 .. 0.86
   2 ?   -2.8   0.0       5.2   9.4e+03       1      19 [.     146     169 ..     146     170 .. 0.73
   3 !    8.1   0.0    0.0019       3.4       2      34 ..     259     294 ..     258     313 .. 0.79
   4 ?    0.7   0.0      0.42   7.4e+02      18      44 ..     338     363 ..     334     370 .. 0.85
   5 ?   -3.6   0.0       9.4   1.7e+04      14      20 ..     421     427 ..     418     430 .. 0.84

  Alignments for each domain:
  == domain 1  score: 2.2 bits;  conditional E-value: 0.14
     Kelch_6   2 raghslvsvg..gkiYifGGytd 22 
                 r++h ++++    +i ifGG ++
  KOO25378.1  85 RCYHGAALHEatQQIIIFGGEKA 107
                 89999*99776689******987 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 5.2
     Kelch_6   1 praghslvsvg...g..kiYifGG 19 
                 pr++hsl +v+   g  +++++GG
  KOO25378.1 146 PRMHHSLSAVDlgnGafRVVVLGG 169
                 688888888776534767999998 PP

  == domain 3  score: 8.1 bits;  conditional E-value: 0.0019
     Kelch_6   2 raghslvsvggkiYifGGytds...spylnkvwvyd 34 
                 r++hs+++ g ++ +fGG++++   + +++ +  +d
  KOO25378.1 259 RYAHSACVEGKRVILFGGRCAQgtlHVASDALVSFD 294
                 789*****************9877666666666665 PP

  == domain 4  score: 0.7 bits;  conditional E-value: 0.42
     Kelch_6  18 GGytdsspylnkvwvydpetksWeqlp 44 
                 GG+++ ++ + +++v+++ +  W +l+
  KOO25378.1 338 GGQDG-GKLHGDLFVLHLPSLCWAPLA 363
                 78888.9****************8875 PP

  == domain 5  score: -3.6 bits;  conditional E-value: 9.4
     Kelch_6  14 iYifGGy 20 
                 ++ifGG+
  KOO25378.1 421 LMIFGGS 427
                 89****8 PP

>> Kelch_2  Kelch motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.0       5.5   9.8e+03      13      20 ..      98     105 ..      96     116 .. 0.76
   2 ?    9.7   0.0   0.00046      0.83       2      33 ..     259     284 ..     258     297 .. 0.84
   3 ?   -3.4   0.0       6.6   1.2e+04      18      46 ..     338     363 ..     320     365 .. 0.76
   4 ?   -3.8   0.1       8.9   1.6e+04       6      26 ..     735     752 ..     732     755 .. 0.78

  Alignments for each domain:
  == domain 1  score: -3.2 bits;  conditional E-value: 5.5
     Kelch_2  13 kiyvvGGa 20 
                 +i+++GG 
  KOO25378.1  98 QIIIFGGE 105
                 79*****7 PP

  == domain 2  score: 9.7 bits;  conditional E-value: 0.00046
     Kelch_2   2 rgghsssvpggkiyvvGGahtdnpnlsssdvh 33 
                 r+ hs++v g +++++GG+      +++ ++h
  KOO25378.1 259 RYAHSACVEGKRVILFGGR------CAQGTLH 284
                 89****************9......5555554 PP

  == domain 3  score: -3.4 bits;  conditional E-value: 6.6
     Kelch_2  18 GGahtdnpnlsssdvhvldlekhvWeevt 46 
                 GG    +++  + d+ vl l + +W++++
  KOO25378.1 338 GGQ---DGGKLHGDLFVLHLPSLCWAPLA 363
                 444...88888999999999999999875 PP

  == domain 4  score: -3.8 bits;  conditional E-value: 8.9
     Kelch_2   6 sssvpggkiyvvGGahtdnpn 26 
                 ss+v++  +++  Ga   +++
  KOO25378.1 735 SSAVGNRGVLSSAGA---DGP 752
                 678999999999999...555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1379 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1382  (0.0770818); expected 358.6 (0.02)
Passed bias filter:                      468  (0.026103); expected 358.6 (0.02)
Passed Vit filter:                        59  (0.00329076); expected 17.9 (0.001)
Passed Fwd filter:                        17  (0.000948185); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.93u 0.30s 00:00:01.23 Elapsed: 00:00:00.47
# Mc/sec: 8907.62
//
Query:       KOO25379.1  [L=262]
Description: hypothetical protein Ctob_012270 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.9e-26   92.5   0.0    4.2e-26   91.9   0.0    1.3  1  HAD_SAK_2  HAD domain in Swiss Army Knife RNA repair proteins


Domain annotation for each model (and alignments):
>> HAD_SAK_2  HAD domain in Swiss Army Knife RNA repair proteins
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   91.9   0.0   2.4e-30   4.2e-26       1     139 [.      20     149 ..      20     151 .. 0.93

  Alignments for each domain:
  == domain 1  score: 91.9 bits;  conditional E-value: 2.4e-30
   HAD_SAK_2   1 viFLDiDGVLnpekskkrregeedealdpeaverlkriveatgakiVlsstWrrred..eelkallkaagrpriigvtpdlpeeeseeekksRaqeile 97 
                 ++FLD+DGV++ +++ +         l++++++ + +ive+tg+ +Vls++Wrr+++  +++++ l+  g  ++igvtp++p+ +       R +eil+
  KOO25379.1  20 LLFLDLDGVICCNYHGE---------LEADKLALVGKIVEETGCWVVLSTDWRRQPHlrARAEETLSGFG-VTCIGVTPQYPMYAR-----GRPKEILA 103
                 58*************99.........9999***************************9888999999999.***********9864.....9******* PP

   HAD_SAK_2  98 wlrrh.eeveawvalDD...kaeldedeelrehlvktdpetGLtee 139
                 w+++    ++aw+alDD     e+    ++ +h+v t+++tGLte+
  KOO25379.1 104 WMAEYnGPIAAWCALDDrdlVLEEGGAPAFINHFVLTEFATGLTEP 149
                 ****9999*********98877888888999*************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (262 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       373  (0.0208043); expected 358.6 (0.02)
Passed bias filter:                      364  (0.0203023); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.25s 00:00:00.68 Elapsed: 00:00:00.41
# Mc/sec: 1901.77
//
Query:       KOO25380.1  [L=504]
Description: flagellar associated protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (504 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       463  (0.0258241); expected 358.6 (0.02)
Passed bias filter:                      360  (0.0200792); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.53u 0.24s 00:00:00.77 Elapsed: 00:00:00.42
# Mc/sec: 3620.74
//
Query:       KOO25381.1  [L=382]
Description: hypothetical protein Ctob_008959 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.6e-06   26.4   0.0      0.017   15.4   0.0    3.0  3  EF-hand_9  EF-hand domain
    1.2e-05   25.6   0.0       0.22   12.0   0.0    2.5  2  EF-hand_7  EF-hand domain pair
    0.00025   20.7   0.0       0.12   12.4   0.0    2.9  3  EF-hand_6  EF-hand domain
  ------ inclusion threshold ------
      0.035   13.7   0.0         13    5.6   0.0    2.7  3  EF-hand_1  EF hand


Domain annotation for each model (and alignments):
>> EF-hand_9  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.2   0.0    0.0014       6.5       3      30 ..      22      49 ..      20      58 .. 0.86
   2 ?   -1.7   0.0      0.84   3.8e+03      45      62 ..     279     296 ..     273     298 .. 0.77
   3 !   15.4   0.0   3.8e-06     0.017       8      54 ..     315     360 ..     313     369 .. 0.92

  Alignments for each domain:
  == domain 1  score: 7.2 bits;  conditional E-value: 0.0014
   EF-hand_9  3 vFevcDtqktGrVpvsrlidyLravtaq 30
                 F  +D+  tG V +s+l+ + ra++  
  KOO25381.1 22 AFTPYDRSGTGLVSLSDLLRVFRANGLA 49
                68889*******************9974 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 0.84
   EF-hand_9  45 DPdgedasvdldtflrvm 62 
                 DP++++  + l+  l+ m
  KOO25381.1 279 DPNERRRRITLSRLLTQM 296
                 899888888888777666 PP

  == domain 3  score: 15.4 bits;  conditional E-value: 3.8e-06
   EF-hand_9   8 DtqktGrVpvsrlidyLravtaqdpeeseLeelakelDPdgedasvd 54 
                 Dtq+tGrV +++  + Lra +    ++s++   a e+DP+g + s++
  KOO25381.1 315 DTQRTGRVSLADFCAGLRAHGV-LLSDSDVGLAAVEIDPEGGGTSLA 360
                 9*********************.999***************988876 PP

>> EF-hand_7  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.3   0.0     8e-05      0.36       6      34 ..      21      49 ..      16      81 .. 0.81
   2 !   12.0   0.0     5e-05      0.22      26      69 ..     291     330 ..     261     332 .. 0.79

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 8e-05
   EF-hand_7  6 eaFkelDtdgdgyldkeellrllrkifqg 34
                 aF  +D+ g+g ++ ++llr++r++  +
  KOO25381.1 21 SAFTPYDRSGTGLVSLSDLLRVFRANGLA 49
                57999*******************86554 PP

  == domain 2  score: 12.0 bits;  conditional E-value: 5e-05
   EF-hand_7  26 rllrkifqgagegsklsdeelellfkefDtdkdGvisfdEFlkl 69 
                 rll+++    g +   +++++ +++   Dt + G++s+ +F++ 
  KOO25381.1 291 RLLTQMQ---GSKAC-PPHQIAAWLARRDTQRTGRVSLADFCAG 330
                 3444421...33333.5688*********************985 PP

>> EF-hand_6  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.4   0.0   2.7e-05      0.12       3      29 ..      20      45 ..      18      48 .. 0.89
   2 ?   -2.3   0.0       1.4   6.3e+03      18      27 ..     237     246 ..     237     248 .. 0.85
   3 !    4.9   0.0    0.0066        30      10      31 .]     315     335 ..     314     337 .. 0.91

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 2.7e-05
   EF-hand_6  3 reaFklfDkdgdGkidaeElrkalrka 29
                 +aF  +D++g+G ++ ++l +++r a
  KOO25381.1 20 ASAFTPYDRSGTGLVSLSDLLRVFR-A 45
                589999*****************99.5 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 1.4
   EF-hand_6  18 daeElrkalr 27 
                 d +El++al+
  KOO25381.1 237 DLNELVSALS 246
                 689****998 PP

  == domain 3  score: 4.9 bits;  conditional E-value: 0.0066
   EF-hand_6  10 DkdgdGkidaeElrkalrkalg 31 
                 D+ ++G ++ +++ + lr a g
  KOO25381.1 315 DTQRTGRVSLADFCAGLR-AHG 335
                 8899*************9.665 PP

>> EF-hand_1  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.6   0.0    0.0028        13       9      27 ..      26      44 ..      19      46 .. 0.90
   2 ?   -3.1   0.0       1.7   7.7e+03      18      27 ..     237     246 ..     237     247 .. 0.82
   3 ?    5.1   0.0    0.0041        18      10      28 ..     315     333 ..     311     334 .. 0.91

  Alignments for each domain:
  == domain 1  score: 5.6 bits;  conditional E-value: 0.0028
                HTTTSSSEEEHHHHHHHHH CS
   EF-hand_1  9 fDkDgdGkIdfeEfkellk 27
                +D+ g+G +++++++++++
  KOO25381.1 26 YDRSGTGLVSLSDLLRVFR 44
                8**************9998 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 1.7
                 EHHHHHHHHH CS
   EF-hand_1  18 dfeEfkellk 27 
                 d++E++++l+
  KOO25381.1 237 DLNELVSALS 246
                 6899*99986 PP

  == domain 3  score: 5.1 bits;  conditional E-value: 0.0041
                 TTTSSSEEEHHHHHHHHHH CS
   EF-hand_1  10 DkDgdGkIdfeEfkellkk 28 
                 D+ ++G++++ +f++ l++
  KOO25381.1 315 DTQRTGRVSLADFCAGLRA 333
                 8999***********9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (382 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       345  (0.0192426); expected 358.6 (0.02)
Passed bias filter:                      273  (0.0152267); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.47u 0.21s 00:00:00.68 Elapsed: 00:00:00.38
# Mc/sec: 2997.81
//
Query:       KOO25382.1  [L=298]
Description: hypothetical protein Ctob_008961 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    3.7e-10   40.0  14.0    5.7e-10   39.4  14.0    1.3  1  zf-RING_2     Ring finger domain
    5.2e-08   32.5  11.0      9e-08   31.7  11.0    1.4  1  zf-RING_11    RING-like zinc finger
    3.3e-07   30.5   8.9    6.3e-07   29.6   8.9    1.5  1  zf-rbx1       RING-H2 zinc finger domain
      1e-06   28.5  12.1    1.7e-06   27.8  12.1    1.4  1  zf-C3HC4_2    Zinc finger, C3HC4 type (RING finger)
    3.7e-05   23.5  13.8    6.6e-05   22.7  13.8    1.4  1  zf-C3HC4      Zinc finger, C3HC4 type (RING finger)
      0.006   16.5  12.8      0.009   16.0  12.8    1.3  1  zf-RING_5     zinc-RING finger domain
  ------ inclusion threshold ------
      0.026   14.1  10.5      0.044   13.4  10.5    1.3  1  Zn_ribbon_17  Zinc-ribbon, C4HC2 type
      0.026   14.5   9.3      0.047   13.7   9.3    1.4  1  zf-RING_UBOX  RING-type zinc-finger
       0.17   12.0   9.0       0.45   10.6   9.0    1.7  1  zf-ANAPC11    Anaphase-promoting complex subunit 11 RING-H2 f
       0.42   10.8  15.8        8.4    6.7  15.8    2.2  1  FANCL_C       FANCL C-terminal domain
       0.56   10.5  11.8       0.98    9.8  11.8    1.4  1  zf-RING-like  RING-like domain
        1.1    9.2  11.8        2.7    7.9  11.8    1.7  1  PHD           PHD-finger
        2.2    8.2   8.0        4.5    7.2   8.0    1.5  1  zf-RING_6     zf-RING of BARD1-type protein
        4.7    7.2  14.2        7.1    6.6  14.2    1.3  1  zf-C3HC4_3    Zinc finger, C3HC4 type (RING finger)
        5.3    7.2  14.9        8.7    6.6  14.9    1.3  1  RINGv         RING-variant domain
        6.9    6.6  11.2         12    5.8  11.2    1.4  1  zf-RING_4     RING/Ubox like zinc-binding domain


Domain annotation for each model (and alignments):
>> zf-RING_2  Ring finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.4  14.0   5.1e-13   5.7e-10       2      44 .]     190     233 ..     189     233 .. 0.95

  Alignments for each domain:
  == domain 1  score: 39.4 bits;  conditional E-value: 5.1e-13
   zf-RING_2   2 eCpICleelssadsvlll.pCgHvfhreClerwlrssstCPlCr 44 
                 +C+IC +el+++++++++  C+H fh +C++rw+++s  CP+C+
  KOO25382.1 190 TCSICICELEEGETIRCMpNCSHKFHSKCIDRWFERSVACPNCK 233
                 6***************9945***********************7 PP

>> zf-RING_11  RING-like zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.7  11.0     8e-11     9e-08       2      29 .]     191     219 ..     190     219 .. 0.97

  Alignments for each domain:
  == domain 1  score: 31.7 bits;  conditional E-value: 8e-11
  zf-RING_11   2 CsICLeefkpgqalfilp.CsHtFHfkCI 29 
                 CsIC+ e+++g++++++p CsH FH+kCI
  KOO25382.1 191 CSICICELEEGETIRCMPnCSHKFHSKCI 219
                 **************99988*********9 PP

>> zf-rbx1  RING-H2 zinc finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.6   8.9   5.6e-10   6.3e-07      11      55 .]     188     233 ..     181     233 .. 0.78

  Alignments for each domain:
  == domain 1  score: 29.6 bits;  conditional E-value: 5.6e-10
     zf-rbx1  11 eeacieckapgdee.cpvvlGeCgHaFHlhCiskWlktrkvCPlcr 55 
                 e +c  c  + +e  +   + +C+H+FH +Ci++W++++ +CP c+
  KOO25382.1 188 EVTCSICICELEEGeTIRCMPNCSHKFHSKCIDRWFERSVACPNCK 233
                 5566666655555546666679**********************96 PP

>> zf-C3HC4_2  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.8  12.1   1.5e-09   1.7e-06       2      40 .]     191     232 ..     190     232 .. 0.95

  Alignments for each domain:
  == domain 1  score: 27.8 bits;  conditional E-value: 1.5e-09
  zf-C3HC4_2   2 CpiCldmlkdpsvvt...pCgHvfCqkCilrsLeekneCPlC 40 
                 C iC+ +l+++ ++    +C H+f++kCi+r+ e++  CP C
  KOO25382.1 191 CSICICELEEGETIRcmpNCSHKFHSKCIDRWFERSVACPNC 232
                 ***********88878899*********************** PP

>> zf-C3HC4  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.7  13.8   5.9e-08   6.6e-05       1      41 []     191     232 ..     191     232 .. 0.95

  Alignments for each domain:
  == domain 1  score: 22.7 bits;  conditional E-value: 5.9e-08
                 -TTT-S--SS-E....E-TTS--B-CHHHHHHHHCTSSB--TTT CS
    zf-C3HC4   1 CpiCleeakepn...elleCkHsfCskCirkilksrkkvkCPlC 41 
                 C+iC +e++e      + +C H+f+skCi+++ +  ++v CP+C
  KOO25382.1 191 CSICICELEEGEtirCMPNCSHKFHSKCIDRWFE--RSVACPNC 232
                 **********997877889***************..99****** PP

>> zf-RING_5  zinc-RING finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0  12.8     8e-06     0.009       2      43 ..     191     233 ..     190     234 .. 0.92

  Alignments for each domain:
  == domain 1  score: 16.0 bits;  conditional E-value: 8e-06
   zf-RING_5   2 CnkCfekl.skeekfyltsCgHifCekClkkllekeavCpiCr 43 
                 C++C ++l ++e   ++ +C+H f++kC+++ +e+++ Cp C+
  KOO25382.1 191 CSICICELeEGETIRCMPNCSHKFHSKCIDRWFERSVACPNCK 233
                 ********666666****************************8 PP

>> Zn_ribbon_17  Zinc-ribbon, C4HC2 type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4  10.5     4e-05     0.044       6      46 ..     190     230 ..     186     242 .. 0.71

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 4e-05
  Zn_ribbon_17   6 sCayCelavk.grvvlc.gvCeHvlHasCarewfenddlaeCp 46 
                   +C++C  +++ g ++ c ++C H  H+ C++ wfe      Cp
    KOO25382.1 190 TCSICICELEeGETIRCmPNCSHKFHSKCIDRWFERSV--ACP 230
                   5766655553245555538****************998..454 PP

>> zf-RING_UBOX  RING-type zinc-finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   9.3   4.2e-05     0.047       1      39 []     191     230 ..     191     230 .. 0.87

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 4.2e-05
  zf-RING_UBOX   1 CpIClelft.......dPlvlpCGHtFCreClwelskslegafkCP 39 
                   C+IC  +++        P   +C+H F+++C+   +++ e+++ CP
    KOO25382.1 191 CSICICELEegetircMP---NCSHKFHSKCI---DRWFERSVACP 230
                   *****9998787655545...8**********...9*********9 PP

>> zf-ANAPC11  Anaphase-promoting complex subunit 11 RING-H2 finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   9.0   0.00041      0.45      34      78 ..     190     233 ..     183     240 .. 0.66

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00041
                 --TTCSTTTTTS-..EEEBTTS-EEEHHHHHHHHHHHSTSSB-TTTS CS
  zf-ANAPC11  34 tcpsckfpGddcp..lvlGkckhnfhlhcilkwletetskglcpmcr 78 
                 tc  c    ++      + +c+h+fh +ci +w+e++ +   cp c+
  KOO25382.1 190 TCSICICELEEGEtiRCMPNCSHKFHSKCIDRWFERSVA---CPNCK 233
                 55555444444330035678**************99876...44444 PP

>> FANCL_C  FANCL C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.7  15.8    0.0075       8.4       2      44 ..     188     226 ..     187     240 .. 0.77

  Alignments for each domain:
  == domain 1  score: 6.7 bits;  conditional E-value: 0.0075
                 --S-SSS--SS-TT-----B--S-TT----B-SGGGHHHHHHH CS
     FANCL_C   2 eveCgiCyayrldsgevpdisCdnekCnkkfHsaCLkeWlrsl 44 
                 ev C+iC ++   +ge  +i C  ++C++kfHs+C+  W++  
  KOO25382.1 188 EVTCSICICELE-EGE--TIRC-MPNCSHKFHSKCIDRWFERS 226
                 689******988.444..3566.489**************764 PP

>> zf-RING-like  RING-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8  11.8   0.00088      0.98      12      43 .]     204     232 ..     191     232 .. 0.83

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.00088
  zf-RING-like  12 vrCsnesCnvrlHvdCfqhyirthsskkCpkC 43 
                   +rC   +C+ ++H +C+++ +++  s  Cp+C
    KOO25382.1 204 IRCM-PNCSHKFHSKCIDRWFER--SVACPNC 232
                   7997.9***************54..446**** PP

>> PHD  PHD-finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.9  11.8    0.0024       2.7       2      50 ..     191     233 ..     190     235 .. 0.78

  Alignments for each domain:
  == domain 1  score: 7.9 bits;  conditional E-value: 0.0024
                 BTTTTSTTSTTSCEEEET.TTSCEEETTTSSSTHSHHSHHSSTBSSTTTH CS
         PHD   2 CavCkkksdeeeelvqCd.gCkrwfHqkClkppleseekpegewlCekCk 50 
                 C++C   + ee+e++ C  +C++ fH kC++   e  +       C++Ck
  KOO25382.1 191 CSICIC-ELEEGETIRCMpNCSHKFHSKCIDRWFE--RSV----ACPNCK 233
                 888877.779*******659**********98777..222....377776 PP

>> zf-RING_6  zf-RING of BARD1-type protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.2   8.0     0.004       4.5       9      50 ..     190     236 ..     185     240 .. 0.80

  Alignments for each domain:
  == domain 1  score: 7.2 bits;  conditional E-value: 0.004
   zf-RING_6   9 rcsrctdilrep...vclggcehifcsncisdcfg..sgcpvcytpa 50 
                  cs c   l e     c+  c h f s ci   f     cp c +p 
  KOO25382.1 190 TCSICICELEEGetiRCMPNCSHKFHSKCIDRWFErsVACPNCKAPV 236
                 6888888887753225******************62258****9985 PP

>> zf-C3HC4_3  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6  14.2    0.0063       7.1       3      49 ..     189     238 ..     187     239 .. 0.81

  Alignments for each domain:
  == domain 1  score: 6.6 bits;  conditional E-value: 0.0063
                 SB-TTTSSS...BS-EEETT.EEEEEE-HHHHHHHHHTT-B-TTT--B--E CS
  zf-C3HC4_3   3 eeCviCler...prnvvllp.CgHlvlCeeCaekllkrkkkCpiCrrpiek 49 
                  +C+iC  +    +++ ++p C H  + ++C +++ +r+  Cp C++p+ +
  KOO25382.1 189 VTCSICICEleeGETIRCMPnCSHK-FHSKCIDRWFERSVACPNCKAPVCE 238
                 689999775332666777777****.9********************9976 PP

>> RINGv  RING-variant domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6  14.9    0.0078       8.7       1      45 [.     191     232 ..     191     237 .. 0.86

  Alignments for each domain:
  == domain 1  score: 6.6 bits;  conditional E-value: 0.0078
                 ETTTTEE-SSSS--B-SS--STCCCSB-HHHHHHHHHHTCT-SB- CS
       RINGv   1 CriCleeeeeseplispCkCrGslklvHesClekWldekeantqC 45 
                 C iC +e ee e++ +  +C+     +H +C+++W++ + a  +C
  KOO25382.1 191 CSICICELEEGETIRCMPNCSH---KFHSKCIDRWFERSVACPNC 232
                 9***********9999999986...89*********995555555 PP

>> zf-RING_4  RING/Ubox like zinc-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.8  11.2      0.01        12       1      46 [.     191     235 ..     191     236 .. 0.87

  Alignments for each domain:
  == domain 1  score: 5.8 bits;  conditional E-value: 0.01
   zf-RING_4   1 cplCdeeldetdkdlkpCeCgyqiClfCyhrileeeegrCPaCree 46 
                 c +C+ el+e ++     +C +++   C +r  e  +  CP+C+ +
  KOO25382.1 191 CSICICELEEGETIRCMPNCSHKFHSKCIDRWFE-RSVACPNCKAP 235
                 889999998777766666***************7.69*******86 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (298 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       674  (0.0375927); expected 358.6 (0.02)
Passed bias filter:                      424  (0.0236488); expected 358.6 (0.02)
Passed Vit filter:                        57  (0.00317921); expected 17.9 (0.001)
Passed Fwd filter:                        17  (0.000948185); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              16  [number of targets reported over threshold]
# CPU time: 0.43u 0.22s 00:00:00.65 Elapsed: 00:00:00.37
# Mc/sec: 2398.63
//
Query:       KOO25383.1  [L=178]
Description: centrin [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.6e-30  101.2  22.0    4.5e-09   35.2   0.0    4.5  4  EF-hand_1        EF hand
      9e-30  102.9   8.4    1.6e-16   60.5   0.4    2.3  2  EF-hand_7        EF-hand domain pair
    2.1e-25   88.3  11.3    5.5e-12   45.3   0.3    4.1  4  EF-hand_8        EF-hand domain pair
    1.7e-24   83.6  14.3    2.6e-09   36.3   0.0    5.2  7  EF-hand_6        EF-hand domain
    2.4e-20   71.0   9.0    2.1e-06   27.0   0.2    5.0  5  EF-hand_5        EF hand
    6.1e-14   52.1   0.2    7.9e-08   32.5   0.1    2.1  2  EF-hand_9        EF-hand domain
    2.2e-06   27.5   3.8       0.19   11.7   0.8    3.6  3  EF-hand_4        Cytoskeletal-regulatory complex EF hand
    0.00015   21.6   0.8       0.39   10.5   0.0    2.1  2  SurA_N_3         SurA N-terminal domain
    0.00042   20.3   1.0        3.6    7.5   0.0    3.6  4  Caleosin         Caleosin related protein
    0.00086   19.2   0.7        0.9    9.4   0.0    2.3  2  SurA_N_2         SurA N-terminal domain
     0.0016   18.7   0.4       0.74   10.1   0.2    2.1  2  SPARC_Ca_bdg     Secreted protein acidic and rich in cysteine
     0.0035   17.6   0.6        1.5    9.2   0.1    2.3  2  EF-hand_14       EF-hand domain
  ------ inclusion threshold ------
      0.012   15.4   1.4      0.028   14.2   0.5    2.0  2  SUB1_ProdP9      SUB1 protease Prodomain ProdP9
      0.013   15.6   4.5      0.024   14.8   0.2    3.0  3  DUF3008          Protein of unknwon function (DUF3008)
      0.047   13.7   1.8        4.2    7.3   0.1    2.5  2  TerB             Tellurite resistance protein TerB
      0.065   12.6   0.8       0.16   11.3   0.6    1.9  1  LETM1            LETM1-like protein
      0.089   12.5   0.2        1.8    8.2   0.0    2.4  3  Peptidase_M24    Metallopeptidase family M24
       0.11   12.6   1.5        0.4   10.8   0.5    2.3  3  DUF3911          Protein of unknown function (DUF3911)
       0.15   12.5   0.4        1.2    9.7   0.1    2.4  2  Acetyltransf_11  Udp N-acetylglucosamine O-acyltransferase; D
       0.16   12.2   0.2         23    5.4   0.0    4.2  6  PMBR             Pseudomurein-binding repeat
       0.19   11.8   2.4        6.9    6.8   0.1    2.7  3  YolD             YolD-like protein
        1.2    9.3   6.8        3.2    7.8   0.2    2.7  2  SapB_1           Saposin-like type B, region 1


Domain annotation for each model (and alignments):
>> EF-hand_1  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.2   0.0   5.5e-12   4.5e-09       1      29 []      27      55 ..      27      55 .. 0.96
   2 !   29.0   0.1   5.5e-10   4.5e-07       1      27 [.      63      89 ..      63      91 .. 0.95
   3 !   22.0   0.3   9.5e-08   7.8e-05       1      28 [.     100     127 ..     100     128 .. 0.91
   4 !   30.9   0.5   1.4e-10   1.1e-07       1      28 [.     136     163 ..     136     164 .. 0.96

  Alignments for each domain:
  == domain 1  score: 35.2 bits;  conditional E-value: 5.5e-12
                HHHHHHHHHTTTSSSEEEHHHHHHHHHHH CS
   EF-hand_1  1 elkeiFrefDkDgdGkIdfeEfkellkkl 29
                e++e+F++fD+D++G Id+ E+k+++++l
  KOO25383.1 27 EIREAFNLFDTDHSGSIDYRELKAAMRAL 55
                79************************985 PP

  == domain 2  score: 29.0 bits;  conditional E-value: 5.5e-10
                HHHHHHHHHTTTSSSEEEHHHHHHHHH CS
   EF-hand_1  1 elkeiFrefDkDgdGkIdfeEfkellk 27
                el++++ ++D Dg+G+I+f Ef+e+++
  KOO25383.1 63 ELRKMITDIDADGSGHIEFPEFLEMMT 89
                79************************8 PP

  == domain 3  score: 22.0 bits;  conditional E-value: 9.5e-08
                 HHHHHHHHHTTTSSSEEEHHHHHHHHHH CS
   EF-hand_1   1 elkeiFrefDkDgdGkIdfeEfkellkk 28 
                 e+ ++F++fD D +GkI+f+ +k++ k+
  KOO25383.1 100 EIIKVFKLFDDDSTGKISFKNLKRVAKE 127
                 6889*******************99876 PP

  == domain 4  score: 30.9 bits;  conditional E-value: 1.4e-10
                 HHHHHHHHHTTTSSSEEEHHHHHHHHHH CS
   EF-hand_1   1 elkeiFrefDkDgdGkIdfeEfkellkk 28 
                 el+++++ +D+DgdG I+ +Ef +++kk
  KOO25383.1 136 ELQDMIDQADRDGDGEINPDEFYRIMKK 163
                 799***********************97 PP

>> EF-hand_7  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.5   0.4   1.9e-19   1.6e-16       2      70 ..      26      88 ..      25      89 .. 0.97
   2 !   46.1   2.3   6.1e-15     5e-12       2      71 .]      99     162 ..      98     162 .. 0.97

  Alignments for each domain:
  == domain 1  score: 60.5 bits;  conditional E-value: 1.9e-19
   EF-hand_7  2 eklkeaFkelDtdgdgyldkeellrllrkifqgagegsklsdeelellfkefDtdkdGvisfdEFlkly 70
                e+++eaF+++Dtd++g++d++el+ ++r        g+++ +eel++++ ++D d++G i f EFl+++
  KOO25383.1 26 EEIREAFNLFDTDHSGSIDYRELKAAMR------ALGFEVKKEELRKMITDIDADGSGHIEFPEFLEMM 88
                789*************************......9********************************99 PP

  == domain 2  score: 46.1 bits;  conditional E-value: 6.1e-15
   EF-hand_7   2 eklkeaFkelDtdgdgyldkeellrllrkifqgagegsklsdeelellfkefDtdkdGvisfdEFlklyr 71 
                 e++  +Fk++D d +g+++   l+r+ +      + g+++++eel+++++  D d+dG+i+ dEF+++++
  KOO25383.1  99 EEIIKVFKLFDDDSTGKISFKNLKRVAK------ELGENMTEEELQDMIDQADRDGDGEINPDEFYRIMK 162
                 788999**********************......*********************************996 PP

>> EF-hand_8  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.9   0.1   1.2e-06     0.001      26      48 ..      26      48 ..      13      50 .. 0.86
   2 !   31.6   0.1   1.4e-10   1.1e-07       9      53 ..      47      89 ..      46      91 .. 0.96
   3 !    8.7   0.3    0.0019       1.5      24      46 ..      97     119 ..      90     119 .. 0.86
   4 !   45.3   0.3   6.8e-15   5.5e-12       2      55 .]     113     164 ..     112     164 .. 0.95

  Alignments for each domain:
  == domain 1  score: 18.9 bits;  conditional E-value: 1.2e-06
   EF-hand_8 26 eevdilfrefDtdgdGkisfeEF 48
                ee+++ f++fDtd++G i++ E 
  KOO25383.1 26 EEIREAFNLFDTDHSGSIDYREL 48
                689999**************986 PP

  == domain 2  score: 31.6 bits;  conditional E-value: 1.4e-10
   EF-hand_8  9 elrrilrilglkkglseeevdilfrefDtdgdGkisfeEFcvlle 53
                el+ ++r+lg +  + +ee++ ++  +D dg+G+i f EF+++++
  KOO25383.1 47 ELKAAMRALGFE--VKKEELRKMITDIDADGSGHIEFPEFLEMMT 89
                89**********..*****************************95 PP

  == domain 3  score: 8.7 bits;  conditional E-value: 0.0019
   EF-hand_8  24 seeevdilfrefDtdgdGkisfe 46 
                 ++ee+  +f++fD d  Gkisf+
  KOO25383.1  97 TKEEIIKVFKLFDDDSTGKISFK 119
                 78888889*************95 PP

  == domain 4  score: 45.3 bits;  conditional E-value: 6.8e-15
   EF-hand_8   2 kgkItreelrrilrilglkkglseeevdilfrefDtdgdGkisfeEFcvllerr 55 
                 +gkI++ +l+r ++ lg +  ++eee++++++ +D+dgdG i+ +EF+  +++r
  KOO25383.1 113 TGKISFKNLKRVAKELGEN--MTEEELQDMIDQADRDGDGEINPDEFYRIMKKR 164
                 8**********99999*99..***************************999885 PP

>> EF-hand_6  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.3   0.0   3.2e-12   2.6e-09       1      31 []      27      56 ..      27      56 .. 0.96
   2 ?   -0.6   0.0       2.2   1.8e+03      19      27 ..      61      69 ..      58      70 .. 0.82
   3 !   12.7   0.0   0.00011     0.091       2      27 ..      64      89 ..      63      93 .. 0.85
   4 !   21.3   0.2     2e-07   0.00016       1      31 []     100     129 ..     100     129 .. 0.90
   5 ?   -0.2   0.0       1.6   1.3e+03      18      27 ..     133     142 ..     132     144 .. 0.83
   6 !   20.2   0.3   4.5e-07   0.00037       2      28 ..     137     163 ..     136     170 .. 0.87
   7 ?   -2.3   0.2       7.3     6e+03       7      14 ..     171     178 .]     171     178 .] 0.83

  Alignments for each domain:
  == domain 1  score: 36.3 bits;  conditional E-value: 3.2e-12
   EF-hand_6  1 elreaFklfDkdgdGkidaeElrkalrkalg 31
                e+reaF+lfD+d++G+id+ El++a+r alg
  KOO25383.1 27 EIREAFNLFDTDHSGSIDYRELKAAMR-ALG 56
                79*************************.887 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 2.2
   EF-hand_6 19 aeElrkalr 27
                +eElrk+++
  KOO25383.1 61 KEELRKMIT 69
                79****997 PP

  == domain 3  score: 12.7 bits;  conditional E-value: 0.00011
   EF-hand_6  2 lreaFklfDkdgdGkidaeElrkalr 27
                lr+    +D dg+G+i + E+  +++
  KOO25383.1 64 LRKMITDIDADGSGHIEFPEFLEMMT 89
                66666779***************998 PP

  == domain 4  score: 21.3 bits;  conditional E-value: 2e-07
   EF-hand_6   1 elreaFklfDkdgdGkidaeElrkalrkalg 31 
                 e+ ++FklfD d +Gki+++ l+++ + +lg
  KOO25383.1 100 EIIKVFKLFDDDSTGKISFKNLKRVAK-ELG 129
                 6889*******************9988.665 PP

  == domain 5  score: -0.2 bits;  conditional E-value: 1.6
   EF-hand_6  18 daeElrkalr 27 
                 + eEl++++ 
  KOO25383.1 133 TEEELQDMID 142
                 899***9985 PP

  == domain 6  score: 20.2 bits;  conditional E-value: 4.5e-07
   EF-hand_6   2 lreaFklfDkdgdGkidaeElrkalrk 28 
                 l++  ++ D+dgdG+i+++E+ ++++k
  KOO25383.1 137 LQDMIDQADRDGDGEINPDEFYRIMKK 163
                 67777899*****************94 PP

  == domain 7  score: -2.3 bits;  conditional E-value: 7.3
   EF-hand_6   7 klfDkdgd 14 
                 +l+D d+d
  KOO25383.1 171 DLLDDDND 178
                 58999998 PP

>> EF-hand_5  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.9   0.0   1.1e-07   8.6e-05       1      23 [.      28      50 ..      28      52 .. 0.90
   2 ?   -1.0   0.0       1.8   1.4e+03      18      24 ..      61      67 ..      61      68 .. 0.84
   3 !   16.3   0.0   6.3e-06    0.0051       6      25 .]      69      88 ..      64      88 .. 0.84
   4 !    8.2   0.3    0.0023       1.9       2      23 ..     102     123 ..     101     125 .. 0.84
   5 !   27.0   0.2   2.6e-09   2.1e-06       1      25 []     137     161 ..     137     161 .. 0.94

  Alignments for each domain:
  == domain 1  score: 21.9 bits;  conditional E-value: 1.1e-07
                HHHHHHHH-SS-SSCE-HHHHHH CS
   EF-hand_5  1 lkdtFqaiDlNgDGkIskeELkt 23
                ++++F+ +D++++G I+  ELk+
  KOO25383.1 28 IREAFNLFDTDHSGSIDYRELKA 50
                5778*****************97 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 1.8
                HHHHHHH CS
   EF-hand_5 18 keELktl 24
                keEL+++
  KOO25383.1 61 KEELRKM 67
                79**997 PP

  == domain 3  score: 16.3 bits;  conditional E-value: 6.3e-06
                HHH-SS-SSCE-HHHHHHHH CS
   EF-hand_5  6 qaiDlNgDGkIskeELktlv 25
                  iD++g+G+I + E+ +++
  KOO25383.1 69 TDIDADGSGHIEFPEFLEMM 88
                579*************9986 PP

  == domain 4  score: 8.2 bits;  conditional E-value: 0.0023
                 HHHHHHH-SS-SSCE-HHHHHH CS
   EF-hand_5   2 kdtFqaiDlNgDGkIskeELkt 23 
                  ++F+ +D +  GkIs+  Lk+
  KOO25383.1 102 IKVFKLFDDDSTGKISFKNLKR 123
                 689*************976665 PP

  == domain 5  score: 27.0 bits;  conditional E-value: 2.6e-09
                 HHHHHHHH-SS-SSCE-HHHHHHHH CS
   EF-hand_5   1 lkdtFqaiDlNgDGkIskeELktlv 25 
                 l+d+ +++D +gDG I+++E+++++
  KOO25383.1 137 LQDMIDQADRDGDGEINPDEFYRIM 161
                 7999******************976 PP

>> EF-hand_9  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.7   0.0     4e-06    0.0033       3      63 ..      31      89 ..      29      92 .. 0.93
   2 !   32.5   0.1   9.7e-11   7.9e-08       3      64 ..     104     163 ..     103     164 .. 0.93

  Alignments for each domain:
  == domain 1  score: 17.7 bits;  conditional E-value: 4e-06
   EF-hand_9  3 vFevcDtqktGrVpvsrlidyLravtaqdpeeseLeelakelDPdgedasvdldtflrvmr 63
                 F+++Dt+  G +   +l++ +ra +  + +  eL +    +D dg  + +++  fl++m 
  KOO25383.1 31 AFNLFDTDHSGSIDYRELKAAMRALGF-EVKKEELRKMITDIDADGS-GHIEFPEFLEMMT 89
                5**************************.788889*************.**********996 PP

  == domain 2  score: 32.5 bits;  conditional E-value: 9.7e-11
   EF-hand_9   3 vFevcDtqktGrVpvsrlidyLravtaqdpeeseLeelakelDPdgedasvdldtflrvmre 64 
                 vF+++D ++tG++  ++l+ + +  ++++ +e eL++   ++D dg  ++++ d f r+m++
  KOO25383.1 104 VFKLFDDDSTGKISFKNLKRVAKELGENM-TEEELQDMIDQADRDGD-GEINPDEFYRIMKK 163
                 7**************************66.5669************9.************97 PP

>> EF-hand_4  Cytoskeletal-regulatory complex EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.1   0.0   0.00075      0.61      40      75 ..      20      59 ..      13      67 .. 0.74
   2 ?    5.1   0.0     0.026        21      41      69 ..      60      88 ..      55      92 .. 0.76
   3 !   11.7   0.8   0.00023      0.19       8      70 ..     100     162 ..      92     167 .. 0.73

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.00075
   EF-hand_4 40 leedkleki...wdladidedgkldfeefciamrli.fdl 75
                l+e+++e+i   ++l d d+ g++d+ e+  amr + f++
  KOO25383.1 20 LSEEQIEEIreaFNLFDTDHSGSIDYRELKAAMRALgFEV 59
                66666666533378*******************9542555 PP

  == domain 2  score: 5.1 bits;  conditional E-value: 0.026
   EF-hand_4 41 eedklekiwdladidedgkldfeefciam 69
                ++++l k+ +  d d  g+++f ef  +m
  KOO25383.1 60 KKEELRKMITDIDADGSGHIEFPEFLEMM 88
                6677777766666677789******8776 PP

  == domain 3  score: 11.7 bits;  conditional E-value: 0.00023
   EF-hand_4   8 eikkyweifsglkpednkltgdkvapvlkn..skleedklekiwdladidedgkldfeefciamr 70 
                 ei k +++f   +    k++ +++  v k+   +++e++l+ + d ad d dg+++ +ef  +m+
  KOO25383.1 100 EIIKVFKLFDDDST--GKISFKNLKRVAKElgENMTEEELQDMIDQADRDGDGEINPDEFYRIMK 162
                 56666666665443..455555555555542268999***********************99987 PP

>> SurA_N_3  SurA N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.5   0.0   0.00047      0.39      89     122 ..      40      73 ..      15      89 .. 0.83
   2 !   10.2   0.1   0.00059      0.48      67     144 ..      90     167 ..      78     170 .. 0.77

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00047
    SurA_N_3  89 dqlidealllqeakklglsvsdeevakeiasipa 122
                 +  id + l+++++ lg++v++ee++k+i++i+a
  KOO25383.1  40 SGSIDYRELKAAMRALGFEVKKEELRKMITDIDA 73 
                 56799999**********************9974 PP

  == domain 2  score: 10.2 bits;  conditional E-value: 0.00059
    SurA_N_3  67 qqlggnldaellde.lglrqqvldqlidealllqeakklglsvsdeevakeiasipaFq.edGkFdkerYkqlLaanglt 144
                  ++g++ ++e++ +  +l ++     i+ + l+  ak+lg ++++ee++++i + +  +  dG+ +++++ ++++++g +
  KOO25383.1  90 GKMGEKDTKEEIIKvFKLFDDDSTGKISFKNLKRVAKELGENMTEEELQDMIDQAD--RdGDGEINPDEFYRIMKKRGDN 167
                 45555444433333477777777788999999********************9988..6469**********99998865 PP

>> Caleosin  Caleosin related protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.5   0.0    0.0045       3.6      10      37 ..      32      59 ..      24      68 .. 0.89
   2 ?    2.8   0.0      0.12        97      93     135 ..      62     104 ..      58     108 .. 0.82
   3 ?    1.6   0.0      0.29   2.3e+02      10      37 ..     105     132 ..      97     141 .. 0.68
   4 ?    5.9   0.1     0.014        11       5      32 ..     136     163 ..     132     170 .. 0.82

  Alignments for each domain:
  == domain 1  score: 7.5 bits;  conditional E-value: 0.0045
    Caleosin 10 vaFfDrdkdGiiypldtyrgfralgfnv 37
                ++ fD+d+ G i   +   ++ralgf+v
  KOO25383.1 32 FNLFDTDHSGSIDYRELKAAMRALGFEV 59
                578***********************97 PP

  == domain 2  score: 2.8 bits;  conditional E-value: 0.12
    Caleosin  93 qkfeeifskyakekkdaltlkevlellkgqrealDlfgwlaal 135
                 +++ ++ +  +++ ++++++ e+le+++g++  +D+   + ++
  KOO25383.1  62 EELRKMITDIDADGSGHIEFPEFLEMMTGKMGEKDTKEEIIKV 104
                 66778889999999****************9999987666555 PP

  == domain 3  score: 1.6 bits;  conditional E-value: 0.29
    Caleosin  10 vaFfDrdkdGiiypldtyrgfralgfnv 37 
                 ++ fD d+ G i + +  r  ++lg n+
  KOO25383.1 105 FKLFDDDSTGKISFKNLKRVAKELGENM 132
                 4557777777777777666666666655 PP

  == domain 4  score: 5.9 bits;  conditional E-value: 0.014
    Caleosin   5 vLqqHvaFfDrdkdGiiypldtyrgfra 32 
                  Lq  ++  Drd dG i p + yr +++
  KOO25383.1 136 ELQDMIDQADRDGDGEINPDEFYRIMKK 163
                 688888888*************997766 PP

>> SurA_N_2  SurA N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.4   0.0    0.0011       0.9      94     122 ..      43      71 ..      39     100 .. 0.81
   2 !    8.1   0.1    0.0027       2.2      97     124 ..     119     146 ..     113     161 .. 0.77

  Alignments for each domain:
  == domain 1  score: 9.4 bits;  conditional E-value: 0.0011
    SurA_N_2  94 vseklleqeaeklGltvsdeelqdaiqgn 122
                 ++ + l+ +++ lG++v +eel+++i+ +
  KOO25383.1  43 IDYRELKAAMRALGFEVKKEELRKMITDI 71 
                 66677899******************983 PP

  == domain 2  score: 8.1 bits;  conditional E-value: 0.0027
    SurA_N_2  97 klleqeaeklGltvsdeelqdaiqgnpa 124
                 k l+  a++lG ++++eelqd+i +   
  KOO25383.1 119 KNLKRVAKELGENMTEEELQDMIDQADR 146
                 568899*****************99655 PP

>> SPARC_Ca_bdg  Secreted protein acidic and rich in cysteine Ca binding region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.1   0.0    0.0081       6.6      49     111 ..      21      85 ..      11      87 .. 0.76
   2 !   10.1   0.2   0.00091      0.74      50     111 ..      95     158 ..      85     160 .. 0.87

  Alignments for each domain:
  == domain 1  score: 7.1 bits;  conditional E-value: 0.0081
  SPARC_Ca_bdg  49 lkeckepvawkFsklDtnsdkvlsksELaplrapl...vklehCikpflescDadkdkkislkEwc 111
                   ++e  e+++  F+ +Dt++ ++++ +EL++    l   vk  +  +++++  Dad  ++i+  E+ 
    KOO25383.1  21 SEEQIEEIREAFNLFDTDHSGSIDYRELKAAMRALgfeVK-KEELRKMITDIDADGSGHIEFPEFL 85 
                   55667888999*****************876555533223.3447788999999999999999886 PP

  == domain 2  score: 10.1 bits;  conditional E-value: 0.00091
  SPARC_Ca_bdg  50 keckepvawkFsklDtnsdkvlsksELaplrapl..vklehCikpflescDadkdkkislkEwc 111
                   k +ke++   F+ +D +s + +s + L+ + ++l    +e+  + +++++D d d++i+  E+ 
    KOO25383.1  95 KDTKEEIIKVFKLFDDDSTGKISFKNLKRVAKELgeNMTEEELQDMIDQADRDGDGEINPDEFY 158
                   5678899999**********************99333469999*******************96 PP

>> EF-hand_14  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.8   0.0     0.011       8.7       6      46 ..      32      72 ..      29      93 .. 0.91
   2 !    9.2   0.1    0.0018       1.5       5      45 ..     104     144 ..      99     164 .. 0.89

  Alignments for each domain:
  == domain 1  score: 6.8 bits;  conditional E-value: 0.011
  EF-hand_14  6 fdlfkdeetdklsvakllkaLaetGirkdDpRLkellkklk 46
                f+lf++++++++   +l +a+++ G + +   L+++++ + 
  KOO25383.1 32 FNLFDTDHSGSIDYRELKAAMRALGFEVKKEELRKMITDID 72
                9*************************999999999998775 PP

  == domain 2  score: 9.2 bits;  conditional E-value: 0.0018
  EF-hand_14   5 lfdlfkdeetdklsvakllkaLaetGirkdDpRLkellkkl 45 
                 +f+lf+d++t+k+s+++l ++ +e G + +   L++++++ 
  KOO25383.1 104 VFKLFDDDSTGKISFKNLKRVAKELGENMTEEELQDMIDQA 144
                 8*************************999999999998875 PP

>> SUB1_ProdP9  SUB1 protease Prodomain ProdP9
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.4   0.1       1.3     1e+03      59      64 ..      83      88 ..      52     111 .. 0.56
   2 ?   14.2   0.5   3.5e-05     0.028      30      68 ..     111     148 ..      98     157 .. 0.88

  Alignments for each domain:
  == domain 1  score: -0.4 bits;  conditional E-value: 1.3
  SUB1_ProdP9 59 eyikil 64
                 e+++++
   KOO25383.1 83 EFLEMM 88
                 444333 PP

  == domain 2  score: 14.2 bits;  conditional E-value: 3.5e-05
  SUB1_ProdP9  30 eskGklanlknlksiiielkedttdeelieyikileekG 68 
                  +s Gk++ +knlk +  el e++t+eel + i+  ++ G
   KOO25383.1 111 DSTGKIS-FKNLKRVAKELGENMTEEELQDMIDQADRDG 148
                  5778886.8**********************99888877 PP

>> DUF3008  Protein of unknwon function (DUF3008)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.0       4.6   3.7e+03      28      45 ..      11      28 ..      10      31 .. 0.75
   2 ?    0.8   0.0      0.69   5.6e+02      19      45 ..      41      67 ..      39      72 .. 0.84
   3 ?   14.8   0.2     3e-05     0.024      19      46 ..     114     141 ..     112     149 .. 0.86

  Alignments for each domain:
  == domain 1  score: -1.8 bits;  conditional E-value: 4.6
     DUF3008 28 gaSksMyesMsekeLeel 45
                g Sk     +se+++ee+
  KOO25383.1 11 GGSKAKKPGLSEEQIEEI 28
                667777778899999886 PP

  == domain 2  score: 0.8 bits;  conditional E-value: 0.69
     DUF3008 19 GetkkseLkgaSksMyesMsekeLeel 45
                G  + +eLk a + +     ++eL+++
  KOO25383.1 41 GSIDYRELKAAMRALGFEVKKEELRKM 67
                666778999999999999999999998 PP

  == domain 3  score: 14.8 bits;  conditional E-value: 3e-05
     DUF3008  19 GetkkseLkgaSksMyesMsekeLeelA 46 
                 G+ + ++Lk  +k++ e M+e+eL+++ 
  KOO25383.1 114 GKISFKNLKRVAKELGENMTEEELQDMI 141
                 7778899*******************96 PP

>> TerB  Tellurite resistance protein TerB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.3   0.1    0.0052       4.2      58     104 ..      16      68 ..      14      83 .. 0.67
   2 ?    5.6   0.2     0.017        14      56     106 ..      88     143 ..      73     162 .. 0.72

  Alignments for each domain:
  == domain 1  score: 7.3 bits;  conditional E-value: 0.0052
        TerB  58 srfglspeeakallelfeeaeee......avdleqftralkrklspeqrrali 104
                 ++ gls+e++++++e+f+ + ++        +l ++ ral+ +++ e++r++i
  KOO25383.1  16 KKPGLSEEQIEEIREAFNLFDTDhsgsidYRELKAAMRALGFEVKKEELRKMI 68 
                 56799******************888333333334444444444444444444 PP

  == domain 2  score: 5.6 bits;  conditional E-value: 0.017
        TerB  56 lksrfglspeeakallelfeeaeee......avdleqftralkrklspeqrraliea 106
                 ++ ++g +++  ++++++f+ + ++         l +++++l++++++e+++++i+ 
  KOO25383.1  88 MTGKMG-EKDTKEEIIKVFKLFDDDstgkisFKNLKRVAKELGENMTEEELQDMIDQ 143
                 555555.55666777777777777766644334467889999999999999999875 PP

>> LETM1  LETM1-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.6    0.0002      0.16     126     173 ..      73     123 ..      30     140 .. 0.71

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.0002
       LETM1 126 ekkekaeelkeflkkvrsggepeevsneeilkvaklFkde....ltLdnlsr 173
                 ++ + + e+ efl+ +  +   e+ ++eei+kv klF+d+    ++++nl+r
  KOO25383.1  73 ADGSGHIEFPEFLEMMTGKM-GEKDTKEEIIKVFKLFDDDstgkISFKNLKR 123
                 33346778999998876654.5688**************9644445555554 PP

>> Peptidase_M24  Metallopeptidase family M24
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.0       1.4   1.2e+03      22      39 ..      17      34 ..      13      59 .. 0.77
   2 ?    1.5   0.0      0.26   2.1e+02       6      51 ..      40      83 ..      36      89 .. 0.84
   3 ?    8.2   0.0    0.0022       1.8       8      44 ..     115     149 ..     112     162 .. 0.81

  Alignments for each domain:
  == domain 1  score: -1.0 bits;  conditional E-value: 1.4
                   HTTCBHHHHHHHHHHHHH CS
  Peptidase_M24 22 kpgvterelaaeieattl 39
                   kpg +e++++++ ea+ l
     KOO25383.1 17 KPGLSEEQIEEIREAFNL 34
                   799999999998887644 PP

  == domain 2  score: 1.5 bits;  conditional E-value: 0.26
                   HHHHHHHHHHHHHHHHHTTCBHHHHHHHHHHHHHHHTTTCEESSSS CS
  Peptidase_M24  6 aariasaaleavleaikpgvterelaaeieattlkrhgarglafpp 51
                   ++ i+++ l+a+++a+   v+ +el ++i++    + g++ + fp 
     KOO25383.1 40 SGSIDYRELKAAMRALGFEVKKEELRKMITDI--DADGSGHIEFPE 83
                   5778889999999999999**********988..888888877775 PP

  == domain 3  score: 8.2 bits;  conditional E-value: 0.0022
                    HHHHHHHHHHHHHHHTTCBHHHHHHHHHHHHHHHTTT CS
  Peptidase_M24   8 riasaaleavleaikpgvterelaaeieattlkrhga 44 
                    +i+ + l++v++++ + +te+el+++i+++   r g 
     KOO25383.1 115 KISFKNLKRVAKELGENMTEEELQDMIDQA--DRDGD 149
                    6777789999999***************98..66554 PP

>> DUF3911  Protein of unknown function (DUF3911)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.0         4   3.3e+03      11      22 ..      26      37 ..      21      50 .. 0.61
   2 ?   -0.8   0.0       2.1   1.7e+03      10      37 ..      61      87 ..      52      96 .. 0.72
   3 ?   10.8   0.5   0.00049       0.4       7      46 ..      95     136 ..      89     153 .. 0.76

  Alignments for each domain:
  == domain 1  score: -1.7 bits;  conditional E-value: 4
     DUF3911 11 kevvemlqlfdl 22
                +e+ e + lfd 
  KOO25383.1 26 EEIREAFNLFDT 37
                455555556653 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 2.1
     DUF3911 10 rkevvemlqlfdlmdtkGfckfknyvev 37
                ++e+ +m+   d  d  G   f +++e+
  KOO25383.1 61 KEELRKMITDIDA-DGSGHIEFPEFLEM 87
                6677777777764.77888888888886 PP

  == domain 3  score: 10.8 bits;  conditional E-value: 0.00049
     DUF3911   7 kGtrkevvemlqlfdlmdtkGfckfknyveve...anetkhne 46 
                 k t++e++++++lfd  d  G   fkn   v     ++ +++e
  KOO25383.1  95 KDTKEEIIKVFKLFDD-DSTGKISFKNLKRVAkelGENMTEEE 136
                 789************7.8889999*998777522444555555 PP

>> Acetyltransf_11  Udp N-acetylglucosamine O-acyltransferase; Domain 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   0.1    0.0015       1.2      24      72 ..      16      69 ..      14      93 .. 0.65
   2 ?    0.6   0.0      0.98     8e+02      52      75 ..     119     142 ..      85     150 .. 0.52

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 0.0015
                     HHTT--HHHHHHHHHHHHHHHS......SSS-HHHHHHHH..HHHTTTSCCHHHHHH CS
  Acetyltransf_11 24 kRrgfseeeikalkkayrllyr......sglsleealeel..eeeaeespevqelld 72
                     k+ g+see+i+++++a++l+        +  +l+ a+++l  e    +++e++++++
       KOO25383.1 16 KKPGLSEEQIEEIREAFNLFDTdhsgsiDYRELKAAMRALgfE---VKKEELRKMIT 69
                     56799************98866543222222233333333331...22445666655 PP

  == domain 2  score: 0.6 bits;  conditional E-value: 0.98
                      HHHHHHHHHTTTSCCHHHHHHHHH CS
  Acetyltransf_11  52 ealeeleeeaeespevqelldFie 75 
                      + l+++++e+ e+   +el d i+
       KOO25383.1 119 KNLKRVAKELGENMTEEELQDMID 142
                      233333333333333344444444 PP

>> PMBR  Pseudomurein-binding repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.5   0.0         2   1.6e+03       2      13 ..      40      51 ..      40      53 .. 0.86
   2 ?   -1.7   0.0       4.9     4e+03       7      16 ..      61      70 ..      59      71 .. 0.81
   3 ?   -1.3   0.0       3.6     3e+03       1      13 [.      75      87 ..      75      88 .. 0.90
   4 ?   -1.6   0.0       4.7   3.8e+03       6      15 ..      97     106 ..      97     107 .. 0.87
   5 ?    5.4   0.0     0.028        23       1      22 [.     112     133 ..     112     135 .. 0.87
   6 ?   -1.2   0.0       3.4   2.7e+03       2      13 ..     149     160 ..     148     163 .. 0.76

  Alignments for each domain:
  == domain 1  score: -0.5 bits;  conditional E-value: 2
        PMBR  2 sgkisyeeyldm 13
                sg+i y+e++++
  KOO25383.1 40 SGSIDYRELKAA 51
                799*****9875 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 4.9
        PMBR  7 yeeyldmasr 16
                +ee+++m+ +
  KOO25383.1 61 KEELRKMITD 70
                799***9876 PP

  == domain 3  score: -1.3 bits;  conditional E-value: 3.6
        PMBR  1 gsgkisyeeyldm 13
                gsg i + e+l+m
  KOO25383.1 75 GSGHIEFPEFLEM 87
                6899*******98 PP

  == domain 4  score: -1.6 bits;  conditional E-value: 4.7
        PMBR   6 syeeyldmas 15 
                 ++ee++++++
  KOO25383.1  97 TKEEIIKVFK 106
                 799***9987 PP

  == domain 5  score: 5.4 bits;  conditional E-value: 0.028
        PMBR   1 gsgkisyeeyldmasrvlafie 22 
                 ++gkis+ +++++a++   +++
  KOO25383.1 112 STGKISFKNLKRVAKELGENMT 133
                 68*************9888776 PP

  == domain 6  score: -1.2 bits;  conditional E-value: 3.4
        PMBR   2 sgkisyeeyldm 13 
                 +g i ++e+ ++
  KOO25383.1 149 DGEINPDEFYRI 160
                 688999999877 PP

>> YolD  YolD-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.8   0.1    0.0085       6.9      18      35 ..      14      31 ..      10      68 .. 0.90
   2 ?    4.3   0.0      0.05        41      56      93 ..      85     124 ..      82     125 .. 0.89
   3 ?   -2.0   0.2       4.9     4e+03       7      34 ..     135     162 ..     133     163 .. 0.74

  Alignments for each domain:
  == domain 1  score: 6.8 bits;  conditional E-value: 0.0085
        YolD 18 kvekpeLDeqqleeinek 35
                k +kp L+e+q+eei e+
  KOO25383.1 14 KAKKPGLSEEQIEEIREA 31
                889************876 PP

  == domain 2  score: 4.3 bits;  conditional E-value: 0.05
        YolD  56 leevtgyiekidelnkelkledeedeek..kiklsnIvev 93 
                 le +tg++ + d+ ++ +k+ + +d+++  ki+++n+ +v
  KOO25383.1  85 LEMMTGKMGEKDTKEEIIKVFKLFDDDStgKISFKNLKRV 124
                 6789999999************99999999******9887 PP

  == domain 3  score: -2.0 bits;  conditional E-value: 4.9
        YolD   7 ealrelkeeqkkvekpeLDeqqleeine 34 
                 e+l++++ + ++    e+ ++++ +i +
  KOO25383.1 135 EELQDMIDQADRDGDGEINPDEFYRIMK 162
                 5677888888888888888888877765 PP

>> SapB_1  Saposin-like type B, region 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.2   0.0     0.028        22      17      30 ..      92     105 ..      84     106 .. 0.83
   2 ?    7.8   0.2     0.004       3.2      13      32 ..     124     143 ..     121     144 .. 0.87

  Alignments for each domain:
  == domain 1  score: 5.2 bits;  conditional E-value: 0.028
                 H-SS--HHHHHHHH CS
      SapB_1  17 LkdNkTeeeIieaL 30 
                 +++++T+eeIi+++
  KOO25383.1  92 MGEKDTKEEIIKVF 105
                 6789*******975 PP

  == domain 2  score: 7.8 bits;  conditional E-value: 0.004
                 HHHHH-SS--HHHHHHHHHH CS
      SapB_1  13 veklLkdNkTeeeIieaLek 32 
                 v k+L++N Teee+ +++++
  KOO25383.1 124 VAKELGENMTEEELQDMIDQ 143
                 6789**********999997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (178 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       948  (0.0528752); expected 358.6 (0.02)
Passed bias filter:                      696  (0.0388198); expected 358.6 (0.02)
Passed Vit filter:                        82  (0.0045736); expected 17.9 (0.001)
Passed Fwd filter:                        22  (0.00122706); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              22  [number of targets reported over threshold]
# CPU time: 0.50u 0.24s 00:00:00.74 Elapsed: 00:00:00.38
# Mc/sec: 1416.68
//
Query:       KOO25384.1  [L=292]
Description: utp--glucose-1-phosphate uridylyltransferase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    5.8e-05   21.9   0.0    6.5e-05   21.8   0.0    1.2  1  UDPGP           UTP--glucose-1-phosphate uridylyltransferase
     0.0012   18.7   3.7     0.0017   18.1   3.7    1.2  1  Phage_GP20      Phage minor structural protein GP20
  ------ inclusion threshold ------
      0.061   13.3  10.7       0.45   10.5   3.7    3.0  2  Ribosomal_L29   Ribosomal L29 protein
       0.11   12.6   0.3         22    5.3   0.0    3.0  3  HGTP_anticodon  Anticodon binding domain
       0.13   12.2   7.5       0.23   11.5   7.5    1.4  1  FlxA            FlxA-like protein
       0.14   12.2   8.5       0.23   11.5   8.5    1.3  1  Laminin_II      Laminin Domain II
       0.45    9.1   5.2        0.2   10.2   0.4    2.0  2  FapA            Flagellar Assembly Protein A
       0.67   10.3   7.4        1.4    9.3   7.4    1.6  1  YlqD            YlqD protein
       0.86    8.4   9.6        1.2    7.9   9.6    1.2  1  Spc7            Spc7 kinetochore protein
        1.5    9.3   4.2        2.6    8.6   2.9    2.0  2  FAM167          FAM167
        1.9    8.6   5.7         32    4.7   5.7    2.2  1  DUF2730         Protein of unknown function (DUF2730)
        3.8    8.0   6.4         20    5.7   6.2    2.1  1  NPV_P10         Nucleopolyhedrovirus P10 protein
        4.1    7.8  14.0       0.75   10.2  10.5    1.6  2  Uso1_p115_C     Uso1 / p115 like vesicle tethering protein, C


Domain annotation for each model (and alignments):
>> UDPGP  UTP--glucose-1-phosphate uridylyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.8   0.0   4.7e-08   6.5e-05     339     411 ..     187     263 ..     103     265 .. 0.89

  Alignments for each domain:
  == domain 1  score: 21.8 bits;  conditional E-value: 4.7e-08
       UDPGP 339 sdlLlvksdlysleeg...slvlnpkrsfktvplvkLg.sefkkveefqkrfk.sipslleldhltvsGdvtfgknvt 411
                  + +  +sd y+  +g   + vl+ +r+ ++ p ++L+ + +k+  ++++ ++   psl  +++l++ G vt+g++v 
  KOO25384.1 187 AEEFAFMSDAYEYVNGsagERVLHASRH-GQPPFISLDaRFYKDATSLKSLLPcGPPSLRRCTSLKIVGRVTIGNEVA 263
                 5568899****99887322455777776.89*******8899999999999**9999******************996 PP

>> Phage_GP20  Phage minor structural protein GP20
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.1   3.7   1.3e-06    0.0017      27     124 ..      87     180 ..      70     198 .. 0.82

  Alignments for each domain:
  == domain 1  score: 18.1 bits;  conditional E-value: 1.3e-06
  Phage_GP20  27 rdtlkeqlkdrdkqLedLkkkakdneeLqkqieelqaknkk.akaeyeakiadlkldnaielaLkeakaknekavkalldkdklklkedgelkgLdeqi 124
                 +++l+ ql++   +L dLk + +  +e q q+ +l+a+      ++ +a++a+l   + +e  L++++a+  +a+k +l+ +  ++  d     L eq+
  KOO25384.1  87 VQQLQAQLAETRAELRDLKVA-QKLAETQSQLRDLKAAERSsTVEQLQAQLAQLREAEELEVGLSTTRAE-IDALKVMLAHSRCQI--D-AAHELVEQL 180
                 6799**************766.899999********98765156789*******************9985.889999999999999..4.344466665 PP

>> Ribosomal_L29  Ribosomal L29 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   3.7   0.00033      0.45       8      44 ..      87     121 ..      86     123 .. 0.86
   2 ?    7.1   1.7    0.0037       5.2       1      28 [.     115     142 ..     115     177 .. 0.89

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00033
                    HHHHHHHHHHHHHHHHHHHHHHHHTSSS-CHHHHHHH CS
  Ribosomal_L29   8 deeLkeklkelkkeLfnLrfqkatgqlenpsrirkvR 44 
                    +++L+++l+e ++eL +L+++++    e  s++r ++
     KOO25384.1  87 VQQLQAQLAETRAELRDLKVAQKLA--ETQSQLRDLK 121
                    589********************88..6667776665 PP

  == domain 2  score: 7.1 bits;  conditional E-value: 0.0037
                    HHHHHS-HHHHHHHHHHHHHHHHHHHHH CS
  Ribosomal_L29   1 kelrelsdeeLkeklkelkkeLfnLrfq 28 
                    ++lr+l  +e    +++l+++L +Lr +
     KOO25384.1 115 SQLRDLKAAERSSTVEQLQAQLAQLREA 142
                    579999*****************99965 PP

>> HGTP_anticodon  Anticodon binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.1       1.4   1.9e+03      48      48 ..     113     113 ..      80     152 .. 0.59
   2 ?    3.7   0.0     0.049        67      29      67 ..     184     229 ..     159     236 .. 0.72
   3 ?    5.3   0.0     0.016        22      45      79 ..     244     278 ..     243     288 .. 0.88

  Alignments for each domain:
  == domain 1  score: -0.9 bits;  conditional E-value: 1.4
                     H CS
  HGTP_anticodon  48 a 48 
                     +
      KOO25384.1 113 T 113
                     2 PP

  == domain 2  score: 3.7 bits;  conditional E-value: 0.049
                     T.......SEEEEES.SSSTHHHHHHHHHHTT-SEEEEE-HHHHHHT CS
  HGTP_anticodon  29 g.......irveldd.snesigkkireadllgipfavvvGekelekg 67 
                             +  + ++  n+s g+++ +a + g p  + ++++ ++ +
      KOO25384.1 184 RsaaeefaFMSDAYEyVNGSAGERVLHASRHGQPPFISLDARFYK-D 229
                     4444455555666666****************9999999888874.3 PP

  == domain 3  score: 5.3 bits;  conditional E-value: 0.016
                     HHHHHHTT-SEEEEE-HHHHHHTEEEEEETTTCEE CS
  HGTP_anticodon  45 ireadllgipfavvvGekelekgtvtvrdrdtreq 79 
                     +r++  l+i  +v++G++ + +g vtv +r  + +
      KOO25384.1 244 LRRCTSLKIVGRVTIGNEVAFEGDVTVINRGAGVK 278
                     68999999999******************977765 PP

>> FlxA  FlxA-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   7.5   0.00017      0.23       8      73 ..      76     144 ..      69     158 .. 0.80

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.00017
        FlxA   8 ssssssgsasqiasLqkQiknlqkqLkelsesdeltkeekk...kqqqliqaQIqqlqaQIaqlqqqqa 73 
                 +s   s+ a  +++Lq Q+++   +L++l+  ++l +++ +    ++ + ++ ++qlqaQ+aql + ++
  KOO25384.1  76 ASVAASSAAVLVQQLQAQLAETRAELRDLKVAQKLAETQSQlrdLKAAERSSTVEQLQAQLAQLREAEE 144
                 556667777889*****************988555555444446899999*************987665 PP

>> Laminin_II  Laminin Domain II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   8.5   0.00016      0.23      10     104 ..      78     168 ..      69     174 .. 0.73

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.00016
                 XXXXXXXXXXXXXXXXXXXXXXXXX..XXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--TTTTTGGGHHHHHHHHHH...HHHHHHHHHHHHHHHHH CS
  Laminin_II  10 etakevleqlaplsqnlentkekls..einrsveetnekvkdankairdArrsvkkLeklapqLldklkelkqleeassslsdniseikelIaqARk 104
                   a++    +++l+++l +t+++l   +++++++et+ +++d++ a r+  + v +L+ ++    ++l+e ++le++ s+  ++i+ +k + a  R 
  KOO25384.1  78 VAASSAAVLVQQLQAQLAETRAELRdlKVAQKLAETQSQLRDLKAAERS--STVEQLQAQL----AQLREAEELEVGLSTTRAEIDALKVMLAHSRC 168
                 455566667999************9334567777777777766655543..3444554444....5778889999999999************9996 PP

>> FapA  Flagellar Assembly Protein A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.4   0.00015       0.2     320     435 ..      68     174 ..      52     192 .. 0.57
   2 ?    0.9   0.5     0.098   1.3e+02     202     223 ..     249     270 ..     246     277 .. 0.91

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.00015
        FapA 320 lgtkteievgldepelkeklkeleeeleeleeeleklkkkikklpklkaekqlesekkeqlkklletkeklkeeleeleeelkelkeeleskkeeakik 418
                 ++++ + ++++   ++   +++l+ +l e+++el++lk + +kl +++  +q    +  + ++   t e+l+ +l++l+e  + l+  l   +  a+i 
  KOO25384.1  68 AVERARAHASVAASSAAVLVQQLQAQLAETRAELRDLKVA-QKLAETQ--SQ---LRDLKAAERSSTVEQLQAQLAQLREAEE-LEVGLS--TTRAEID 157
                 5667777777776777777899999999999999988888.4444411..11...1112222222222344444444433333.222222..2244666 PP

        FapA 419 vnkeiypgvkikigkkk 435
                 + k +    + +i+ ++
  KOO25384.1 158 ALKVMLAHSRCQIDAAH 174
                 66666666666666544 PP

  == domain 2  score: 0.9 bits;  conditional E-value: 0.098
        FapA 202 sViikGnVeegmkVkasgditi 223
                 s++i G V+ g +V  +gd+t+
  KOO25384.1 249 SLKIVGRVTIGNEVAFEGDVTV 270
                 789******************9 PP

>> YlqD  YlqD protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3   7.4     0.001       1.4      20     102 ..      85     158 ..      71     179 .. 0.71

  Alignments for each domain:
  == domain 1  score: 9.3 bits;  conditional E-value: 0.001
        YlqD  20 elqqqlqaqieqldkelqqLefqakrlikeikkqsaqqieeiqeqvekekserlekkkqllqqleqvqkLelgsevkqgqves 102
                  l qqlqaq+ ++  el+ L++ +k +++         ++++++  ++e+s   e+ +  l+ql++ ++Le+g    ++++++
  KOO25384.1  85 VLVQQLQAQLAETRAELRDLKVAQKLAET---------QSQLRDLKAAERSSTVEQLQAQLAQLREAEELEVGLSTTRAEIDA 158
                 45667777777777777777665554433.........345556666777777777777777788888888887777777776 PP

>> Spc7  Spc7 kinetochore protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.9   9.6    0.0009       1.2     149     259 ..      67     179 ..      59     190 .. 0.53

  Alignments for each domain:
  == domain 1  score: 7.9 bits;  conditional E-value: 0.0009
        Spc7 149 egleedkelLekqeeeldellpeleeekaeleeeleklqeaaeeles.idkeeLeel..reelaelkaeieekkkelaelqeqleeleekieelkeqks 244
                 +++e+ +++ +   + +  l+++l+++ ae ++el++l+ a++  e+ ++  +L+++   +++++l+a+++ + +e +el+  l + +++i++lk   +
  KOO25384.1  67 AAVERARAHASVAASSAAVLVQQLQAQLAETRAELRDLKVAQKLAETqSQLRDLKAAerSSTVEQLQAQLA-QLREAEELEVGLSTTRAEIDALKVMLA 164
                 55555555555666666677777777777777777777764443222122333333311223444444444.334455555555566666666666666 PP

        Spc7 245 eleeeiaeaervlee 259
                 + + +i +a +++e+
  KOO25384.1 165 HSRCQIDAAHELVEQ 179
                 666666655555555 PP

>> FAM167  FAM167
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.6   2.9    0.0019       2.6       6      51 ..      88     132 ..      86     160 .. 0.77
   2 ?   -0.6   0.1       1.3   1.9e+03      16      35 ..     153     163 ..     130     196 .. 0.60

  Alignments for each domain:
  == domain 1  score: 8.6 bits;  conditional E-value: 0.0019
      FAM167   6 qqlarqLlrlrseikklkveqsceehkemLddatleleeeeelsdl 51 
                 qql  qL + r+e+++lkv q  +e ++ L d++        +++l
  KOO25384.1  88 QQLQAQLAETRAELRDLKVAQKLAETQSQLRDLKAAERSS-TVEQL 132
                 79999***************************98754433.44444 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 1.3
      FAM167  16 rseikklkveqsceehkemL 35 
                 r+ei +lkv          L
  KOO25384.1 153 RAEIDALKVM---------L 163
                 5555555553.........2 PP

>> DUF2730  Protein of unknown function (DUF2730)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.7   5.7     0.023        32      16      96 ..      85     139 ..      73     183 .. 0.51

  Alignments for each domain:
  == domain 1  score: 4.7 bits;  conditional E-value: 0.023
     DUF2730  16 vvvavilllldskYakredleklaekveendkrlteletkvenLPtakdlekLkllladlrgelkaleaevrqlshqvdLL 96 
                 v+v                        ++ + +l+e+ +++ +L  a+ l++ + +l+dl++  +  + +v+ql+ q+  L
  KOO25384.1  85 VLV------------------------QQLQAQLAETRAELRDLKVAQKLAETQSQLRDLKAAER--SSTVEQLQAQLAQL 139
                 444........................44444455555555555555555555555555544321..22222222222222 PP

>> NPV_P10  Nucleopolyhedrovirus P10 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.7   6.2     0.015        20      20      66 ..      87     137 ..      79     172 .. 0.80

  Alignments for each domain:
  == domain 1  score: 5.7 bits;  conditional E-value: 0.015
     NPV_P10  20 VdalqqqvddvqenlpdvtelnekLdaqsaqLaelet.....kvenIqdiLn 66 
                 V+ lq+q+++ +++l+d++ + +kL + + qL +l++     +ve+ q  L 
  KOO25384.1  87 VQQLQAQLAETRAELRDLK-VAQKLAETQSQLRDLKAaerssTVEQLQAQLA 137
                 6788888888888888854.88888888888888887677776776666554 PP

>> Uso1_p115_C  Uso1 / p115 like vesicle tethering protein, C terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.1       5.9   8.2e+03      38      47 ..      21      30 ..       4      50 .. 0.40
   2 ?   10.2  10.5   0.00054      0.75      10      90 ..      80     164 ..      61     167 .. 0.79

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 5.9
  Uso1_p115_C 38 eakkaaesqa 47
                  a  +a++++
   KOO25384.1 21 RARPHARQES 30
                 1222222222 PP

  == domain 2  score: 10.2 bits;  conditional E-value: 0.00054
  Uso1_p115_C  10 aaslkdeneklkaelqslskalesleqkeakkaaesqakeleaenkklekeleklraelkeekekekek......qkEldDLLlllg 90 
                  a+s+  + ++l+a+l +++ +l++l+ +  +k ae+q++  + ++ + ++ +e+l+a+l++ +e e+ +      ++E+d L ++l+
   KOO25384.1  80 ASSAAVLVQQLQAQLAETRAELRDLKVA--QKLAETQSQLRDLKAAERSSTVEQLQAQLAQLREAEELEvglsttRAEIDALKVMLA 164
                  566777889999*************999..555555555555555667778999999999999988766788999999999877775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (292 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1559  (0.0869541); expected 358.6 (0.02)
Passed bias filter:                      618  (0.0344693); expected 358.6 (0.02)
Passed Vit filter:                        80  (0.00446204); expected 17.9 (0.001)
Passed Fwd filter:                        14  (0.000780858); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 0.57u 0.26s 00:00:00.83 Elapsed: 00:00:00.43
# Mc/sec: 2052.33
//
Query:       KOO25385.1  [L=727]
Description: dol-p-man:man c -pp-dol alpha-1,6-mannosyltransferase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.2e-50  172.1   7.7    2.8e-50  171.8   7.7    1.1  1  Glyco_transf_22  Alg9-like mannosyltransferase family
    8.4e-05   23.5   0.0    0.00013   22.9   0.0    1.3  1  CS               CS domain
  ------ inclusion threshold ------
       0.16   12.0   0.3        0.8    9.8   0.0    2.3  2  NDUF_B12         NADH-ubiquinone oxidoreductase B12 subunit f


Domain annotation for each model (and alignments):
>> Glyco_transf_22  Alg9-like mannosyltransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  171.8   7.7   4.7e-54   2.8e-50      19     414 ..     243     632 ..     225     635 .. 0.84

  Alignments for each domain:
  == domain 1  score: 171.8 bits;  conditional E-value: 4.7e-54
  Glyco_transf_22  19 tsfdpDEffqslEvahklvfgkgtltWEyspkygiRSylf..lllla...lpyrllaelvadskiavlyapRlllallsalidyylfravcrky 107
                      ++ +++E f  + ++  l+ +  ++ +++    g+ + +f  +llla   +p+     l + +k a ly++Rl+l+llsa + + ++ra+ r+y
       KOO25385.1 243 YN-KVEESFGLQATHDLLFHRMDLSAYDHHMFPGVVPRTFlgPLLLAgcsSPLVACLSLAGATKLAALYVVRLVLGLLSACGVVAVMRATRRQY 335
                      33.899******99999999********************885555511145555666778899999*************************** PP

  Glyco_transf_22 108 gseiakialllslsswglfvfstrtfsnslemlltsialyllsellsrenksssnekylvavlliavlavliRptsallwlplvlflllrlvkk 201
                      g   ++ + lls +++++ ++ +rt++n+++ ll++ a+ ++ +              + ++ l+++++v++R + +ll++pl l +l    ++
       KOO25385.1 336 GYDAFRALALLSACQFHYPFYASRTLPNTFASLLVLPATAAWID-----------GDVRRVIRLLTIAVVIFRAELVLLLAPLALLFL----AT 414
                      *******************************************7...........56667899********************99999....55 PP

  Glyco_transf_22 202 rsktflfliialvllvlllvlvlviliDslfYgkfvftplnflkyNvlsnlsslyGvhPwyfYllqnlpnilgvlllavllgllvllsrkvsrl 295
                       +++f   ++ l++ +++++l+l++++Ds+++ + + ++ ++l++N + n+ss yG++Pw++Y++++lp+ ++ + +++ll +lv      +r+
       KOO25385.1 415 SRISF-PELLRLGFGTAFVALALTVAVDSVLWRRPLYPEGEVLWFNTILNKSSEYGTAPWHWYFSSALPRAMLLSYPLALLSPLVV----GQRI 503
                      56777.6888999999999999***************************************************************9....3556 PP

  Glyco_transf_22 296 llllltilltLlvysllpHKElRFllpvlPlillsaavlltrls.......resakvskk..........lsllvllllfnvvlalllglvhqa 372
                        l++  +l++++ys+lpHKElRF+l+ lP + + aav+ +rl        ++ +k               ++l+l+  f ++  +l++  +++
       KOO25385.1 504 RELVAVPVLFVALYSILPHKELRFVLYALPPLNVAAAVATARLYrklpeddEKATK---EtrmlaifgrlGTVLMLVASFGASCLFLMAAAQNY 594
                      6788999999*******************9999********999899976533333...23347777766667777777777777888887777 PP

  Glyco_transf_22 373 gvillvevmseleetkrknrkekketssvyvlkecyrtPsss 414
                             ++++l++   ++   ++++++v+++ +    ++s+
       KOO25385.1 595 PGA---LALHQLHALG-AAAASRGNPVHVHIGVDAAVSGVSR 632
                      777...5555555555.3345778999999987766655555 PP

>> CS  CS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.9   0.0   2.2e-08   0.00013       3      76 .]      55     137 ..      53     137 .. 0.84

  Alignments for each domain:
  == domain 1  score: 22.9 bits;  conditional E-value: 2.2e-08
                 CEEEEETTEEEEEEE-TTCTTTTTCEEEEEETTEEEEEETSCEEEEECE............BSS-BETTTEEEEEETTEEEEEEEB CS
          CS   3 ydWyQtldeVvvtiyvkkvnikkkdvkvefkerslkvkigkeklliege............LfgpIdpeesswtieskkveitLkK 76 
                 ++W Q++d +v+ti+v+ +  +k+  +v+ k+r l++   ++  +  g+            L+++++ + + + +  ++v +tL+K
  KOO25385.1  55 FKWGQKKDRIVLTIFVPCL--EKDAATVDVKPRALTFRA-ERIAVFAGNrkeqreytlslkLYAEVEANGADIALRHDHVRVTLTK 137
                 89**************998..888888888888888887.334445555568888888888***********************99 PP

>> NDUF_B12  NADH-ubiquinone oxidoreductase B12 subunit family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   0.0   0.00013       0.8      19      47 ..     416     444 ..     413     450 .. 0.86
   2 ?   -2.2   0.0      0.73   4.3e+03       9      14 ..     639     644 ..     638     648 .. 0.80

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.00013
    NDUF_B12  19 akrfkraffpGfglavaafaaavgyEhfl 47 
                 + +f ++++ Gfg+a++a a++v+++ +l
  KOO25385.1 416 RISFPELLRLGFGTAFVALALTVAVDSVL 444
                 5677788889***************9885 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 0.73
    NDUF_B12   9 aWRykg 14 
                 aWRy++
  KOO25385.1 639 AWRYSK 644
                 9***65 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (727 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       449  (0.0250432); expected 358.6 (0.02)
Passed bias filter:                      297  (0.0165653); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.61u 0.28s 00:00:00.89 Elapsed: 00:00:00.44
# Mc/sec: 4963.54
//
Query:       KOO25386.1  [L=484]
Description: tyrosine aminotransferase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.4e-62  210.4   0.0    5.2e-62  210.1   0.0    1.1  1  Aminotran_1_2    Aminotransferase class I and II
    3.4e-06   26.3   0.0    4.9e-06   25.7   0.0    1.1  1  Aminotran_5      Aminotransferase class-V
    8.2e-05   22.1   0.0    0.00015   21.2   0.0    1.3  1  DegT_DnrJ_EryC1  DegT/DnrJ/EryC1/StrS aminotransferase family
     0.0017   17.0   0.0     0.0026   16.3   0.0    1.3  1  Cys_Met_Meta_PP  Cys/Met metabolism PLP-dependent enzyme
     0.0093   15.3   0.0      0.014   14.7   0.0    1.3  1  Beta_elim_lyase  Beta-eliminating lyase
  ------ inclusion threshold ------
      0.044   13.6   0.1       0.21   11.4   0.0    2.1  2  BING4CT          BING4CT (NUC141) domain


Domain annotation for each model (and alignments):
>> Aminotran_1_2  Aminotransferase class I and II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  210.1   0.0   1.7e-65   5.2e-62       2     363 .]     100     469 ..      99     469 .. 0.88

  Alignments for each domain:
  == domain 1  score: 210.1 bits;  conditional E-value: 1.7e-65
                    EEEESSSSSTTSTTSSHHHHHHHHHHHHHHHHHTSTTST-BTTHHHHHHHHHHHHHCTCTTCHTTGGEGEEEESHHHHHHHHHHHHHHHTTT-EEE CS
  Aminotran_1_2   2 dvinLgsneylgdsgkptlpevakaekegalaggtlneygpidglpeleealakflgrseklklkreaavvvgsGagaliealifllklnpgdeil 97 
                    +vi L+ ++++   g+ + pev+ ++   +   g++n yg + gl++++ a+ak ++   +  +k+e  v+  sG++ ++e++i  + l+ gd+ l
     KOO25386.1 100 PVIPLSLGDPTAF-GNLQAPEVLNETMIALIREGKFNGYGASSGLDAARAAVAKRFS-TSTCVYKPE-DVIIASGCSGALEIAINGM-LDEGDNLL 191
                    6899******999.5546666665555559999************************.9999*****.8999999888999999999.89****** PP

                    EEESS-THHHHHHHHTTSEEEEEEBEETTTTEE-HHHHHHHHTTHHCTTETEEEEEEESS-TTT--B--HHHHHHHHHHHHHTTEEEEEEETTTTC CS
  Aminotran_1_2  98 vpdptyasyknilrlsggevvryplyseedfhldlealeealkeapegnkktkvilvesphNPtGtvatleeleklldlakkynlllfvDeaYagf 193
                    vp+p ++ y+  ++  g+ v++y l +e++++ dle+le++++       +tk +++++p+NP+G+v+++e+le lld+a+++ l ++ De+Y+++
     KOO25386.1 192 VPRPGFPLYQVLAESQGASVREYDLLPEKGWQADLEQLEALIDA------RTKALVINNPSNPCGSVFPREHLEGLLDIARRHTLPIIADEIYGEM 281
                    *******************************************9......********************************************** PP

                    BSSSSHTHHHHGGSTTSTTEEEEEESSSTTSSGGG-EEEEEEEH......HHHHHHHHHHHHHTS.SHHHHHHHHHHHHHHHHHHH......HHHH CS
  Aminotran_1_2 194 vfgsldavatranveeepnllivgslsKafGlaGeRvGyilgna......avvsqlrklsrpfls.ssllqaavaaalsdallkqs......elee 276
                     f+ + + + +a ++e++ ++ vg+l+K f ++G+RvG+il ++      av++   +l + +    +l+q a+  +l  ++  ++          
     KOO25386.1 282 TFEGHPFHP-LAALSEDVPIVSVGGLAKQFLVPGWRVGWILLHDpvgalgAVREGFGRLTQLISGaNTLVQGAIPRVLCPKPGSAEaaslaaADAH 376
                    *****9999.9*******************************888*****5555555555554445555555555555555554445544433345 PP

                    HHHHHHHHHHHHHHHHHHS.TEEEECCSCSSEEEEEETHH......CHHHHHHHHHHTCTEEEEEGGGGTSTTEEEEECTTS-HHHHHHHHHHH CS
  Aminotran_1_2 277 mrqrlqkrrkelrdeLael.glkvlasqsgmflltdlsae......takelskkLleevgvyvtpgtsftvpgrlRitvAglteeeleelveal 363
                      ++lq+++ + +++La++ gl+ +a+q++m++++ +++       ++ e+ + Ll e+ v v+pg +f+v+ ++R+ + +++++ l  + +++
     KOO25386.1 377 YMRTLQDSAAFTYERLARIrGLQPVAPQGAMYVMVQYDPTvlpafaNDAEFVERLLSEEAVFVLPGACFGVEHFFRVVF-SGPRSALADAFDRI 469
                    667999**********999***************************9********************************.88888777777665 PP

>> Aminotran_5  Aminotransferase class-V
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.7   0.0   1.6e-09   4.9e-06      42     162 ..     140     259 ..     123     277 .. 0.81

  Alignments for each domain:
  == domain 1  score: 25.7 bits;  conditional E-value: 1.6e-09
                  HHHHHHHHHHHHHHHT-ST....GGGEEEESSHHHHHHHHHHHCCCC-TTTSEEEEETTSHGGGTHHHHHHHHHHTEEEEEEEB..ETTSCBEGGGHH CS
  Aminotran_5  42 tkaveearekvaelinaes....eeeiiftsGtteainlvalslarslkpgdeivvteaehhanlvpwqelakrtgakvkvipl..deegeldldele 133
                  ++ +++ar+ va+ + +++     e++i  sG++ a++++++++   l++gd+ +v + +        q la+ +ga v+ + l  +++++ dl++le
   KOO25386.1 140 SSGLDAARAAVAKRFSTSTcvykPEDVIIASGCSGALEIAINGM---LDEGDNLLVPRPGFP----LYQVLAESQGASVREYDLlpEKGWQADLEQLE 230
                  56667778888777776532222699******************...***********9976....4678999*******9976226778999***** PP

                  HH--TTEEEEEEESBETTTTEB--HHHHH CS
  Aminotran_5 134 kllnektklvaithvsnvtGtiqpveeig 162
                  +l++ +tk++ i+  sn  G ++p e++ 
   KOO25386.1 231 ALIDARTKALVINNPSNPCGSVFPREHLE 259
                  **********************9977654 PP

>> DegT_DnrJ_EryC1  DegT/DnrJ/EryC1/StrS aminotransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.2   0.0     5e-08   0.00015      40     144 ..     165     275 ..     148     278 .. 0.85

  Alignments for each domain:
  == domain 1  score: 21.2 bits;  conditional E-value: 5e-08
                      EEEEESSHHHHHHHHHHHTTTTTT-EEEEESSS-THHHHHHHHTT-EEEEE-B-TTT.SSB-GGGCGGG--TTEEEEE...EB-GGGB--...- CS
  DegT_DnrJ_EryC1  40 haiavssGtaAlhlaLralgvgpgdeVIvpsltFvatanavlelgakpvfvDvdpdt.ynidpaaieaaitertkaIl...pVhlyGqva...d 126
                       +i  s ++ Al++a++ + +++gd ++vp  +F      +   ga +   D  p+  ++ d +++ea+i  rtka +   p +  G v+    
       KOO25386.1 165 DVIIASGCSGALEIAINGM-LDEGDNLLVPRPGFPLYQVLAESQGASVREYDLLPEKgWQADLEQLEALIDARTKALVinnPSNPCGSVFpreH 257
                      45666778899****9985.4568****************************9987549*****************993444667899986667 PP

                      HHHHHHHHHHCT-EEEEE CS
  DegT_DnrJ_EryC1 127 mdalkaiaakhglkvieD 144
                      ++ l +ia++h l++i D
       KOO25386.1 258 LEGLLDIARRHTLPIIAD 275
                      9999************99 PP

>> Cys_Met_Meta_PP  Cys/Met metabolism PLP-dependent enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.0   8.8e-07    0.0026      71     175 ..     166     277 ..     123     293 .. 0.80

  Alignments for each domain:
  == domain 1  score: 16.3 bits;  conditional E-value: 8.8e-07
                      EEESSHHH.HHHHHHHTTS-TTEEEEEESTSSHHHHHHHHHTHHHTTCEEEEEST.......TSHHHHHHHCCTTEEEEEEESS-TTTT---.. CS
  Cys_Met_Meta_PP  71 lavssGma.AiaaailallkaGdeivvsddlYggtqrllkkvlkklgievkfvdt.......sdleelekaikentklvylEtptnpllkvv.. 154
                      ++++sG + A++ ai  +l +Gd+++v +  +   q l    ++  g +v+ +d        +dle+le+ i+ +tk++ +  p+np  +v   
       KOO25386.1 166 VIIASGCSgALEIAINGMLDEGDNLLVPRPGFPLYQVL----AESQGASVREYDLlpekgwqADLEQLEALIDARTKALVINNPSNPCGSVFpr 255
                      45677754389999*************99755433333....333333333333333344449*************************999733 PP

                      .-HHHHHHHHHHTT-EEEEEGT CS
  Cys_Met_Meta_PP 155 .DiekiaklakkagvlvvvDnt 175
                        +e ++++a+ + ++++ D  
       KOO25386.1 256 eHLEGLLDIARRHTLPIIADEI 277
                      36888999*****999999976 PP

>> Beta_elim_lyase  Beta-eliminating lyase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   0.0   4.7e-06     0.014      93     167 ..     208     275 ..     122     276 .. 0.77

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 4.7e-06
                      CC--EEEEE-EBTTTBE-HHHHHHHS--S-TTS-EEEEEEEESSBTTTTTB---HHHHHHHHHHHHHCT-EEEEE CS
  Beta_elim_lyase  93 lagvklrdlknkeaGkmdlekleaaikevgaheekiklisltvTnntagGqvvsleelrevaaiakkygiplhlD 167
                       a+v+  dl  ++  + dle+lea+i++      ++k++++ +  n  +G v + e+l+ + +ia+++ +p++ D
       KOO25386.1 208 GASVREYDLLPEKGWQADLEQLEALIDA------RTKALVINNPSNP-CGSVFPREHLEGLLDIARRHTLPIIAD 275
                      44555555556665689***********......5889999**9995.***********************9988 PP

>> BING4CT  BING4CT (NUC141) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   6.9e-05      0.21      26      73 ..      43      90 ..      38      92 .. 0.93
   2 ?   -2.4   0.0       1.4   4.2e+03      32      48 ..     187     203 ..     160     207 .. 0.72

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 6.9e-05
     BING4CT 26 vghskgissiivPGsGepnfdaleanpfetkkqrrereVrsLLeKlqp 73
                 g ++ i++++ PG  ep+  ++ + p   k qr  + +r+++eK+  
  KOO25386.1 43 YGAESDITEVVTPGTLEPKRAKIWHVPMSIKAQRTSNPIRKIMEKITS 90
                5888999***************************************75 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 1.4
     BING4CT  32 issiivPGsGepnfdal 48 
                  ++++vP  G p +  l
  KOO25386.1 187 GDNLLVPRPGFPLYQVL 203
                 46789999998888765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (484 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       303  (0.0169); expected 358.6 (0.02)
Passed bias filter:                      282  (0.0157287); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.51u 0.25s 00:00:00.76 Elapsed: 00:00:00.42
# Mc/sec: 3427.85
//
Query:       KOO25387.1  [L=136]
Description: hypothetical protein Ctob_008964 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    0.00019   21.2   0.1    0.00031   20.5   0.1    1.5  1  PDZ_6     PDZ domain
    0.00046   20.5   0.0    0.00068   19.9   0.0    1.3  1  PDZ       PDZ domain
    0.00076   19.8   0.0     0.0024   18.2   0.0    1.7  2  PDZ_2     PDZ domain


Domain annotation for each model (and alignments):
>> PDZ_6  PDZ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.5   0.1   5.2e-08   0.00031       2      42 ..      71     110 ..      70     128 .. 0.85

  Alignments for each domain:
  == domain 1  score: 20.5 bits;  conditional E-value: 5.2e-08
       PDZ_6   2 VtaVdpgsPAdrAG.lrvGDiilsvNGqpveglsladvaall 42 
                 + +V+ g+ A +AG l+  D+i +v G+pv   +l+    +l
  KOO25387.1  71 IDEVVVGGAAHKAGgLQEWDCISAVEGRPV--FTLQATLKAL 110
                 779**********88***************..7777655555 PP

>> PDZ  PDZ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.9   0.0   1.1e-07   0.00068       6      79 ..      53     122 ..      48     127 .. 0.75

  Alignments for each domain:
  == domain 1  score: 19.9 bits;  conditional E-value: 1.1e-07
                 TSTTSESSEEEEEETTSSSSSSEEEEEECTTSHHHHHT.SSTTEEEEEETTEETTTSHHHHHHHHHHTTTS.EEEE CS
         PDZ   6 kegrgglGfslkggsdqrgdkgifvsevlpggaaeadg.lkvGDkIlsvNgvdvenvsheeavqaikgskg.kvtL 79 
                 +   g+lG+  + ++         + ev+ ggaa+++g l++ D I +v g++v +++ + +++   + ++ +++L
  KOO25387.1  53 R-ADGQLGLYMSLDTG-----APLIDEVVVGGAAHKAGgLQEWDCISAVEGRPVFTLQATLKALSAVPMNQpTIRL 122
                 5.55666666666555.....469******************************9998877777777777764444 PP

>> PDZ_2  PDZ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.0   0.0      0.19   1.1e+03      54      73 ..      35      55 ..      22      64 .. 0.67
   2 !   18.2   0.0     4e-07    0.0024       2      58 ..      57     112 ..      56     129 .. 0.84

  Alignments for each domain:
  == domain 1  score: 0.0 bits;  conditional E-value: 0.19
                HHHHTS-TT-.EEEEEEEETT CS
       PDZ_2 54 slllkkkpGd.tVkltvlRdg 73
                 ll+++ pG  t  +t++R +
  KOO25387.1 35 ALLNGTFPGAtTHVVTISRAD 55
                456677777514567888855 PP

  == domain 2  score: 18.2 bits;  conditional E-value: 4e-07
                 ...XX------..-EEEEEE-TTSGGGGT..--TT-EEEEETTB--SSHHHHHHHHHT CS
       PDZ_2   2 ylGvsvsdeedtggvlvvsVkeggPaakag.lkagDvilkvdgkkvksledlislllk 58 
                 +lG  +s +++    l+ +V  gg a+kag l+  D i +v+g++v +l+   ++l++
  KOO25387.1  57 QLGLYMSLDTG--APLIDEVVVGGAAHKAGgLQEWDCISAVEGRPVFTLQATLKALSA 112
                 78999999998..99999****************************999999888874 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (136 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       154  (0.00858944); expected 358.6 (0.02)
Passed bias filter:                      147  (0.00819901); expected 358.6 (0.02)
Passed Vit filter:                         5  (0.000278878); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.35u 0.25s 00:00:00.60 Elapsed: 00:00:00.38
# Mc/sec: 1063.91
//
Query:       KOO25388.1  [L=1979]
Description: protein atypical group [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    7.2e-77  258.9   0.5    7.2e-77  258.9   0.5    2.7  2  FAT             FAT domain
    2.6e-71  240.4   0.1      4e-71  239.7   0.1    1.3  1  PI3_PI4_kinase  Phosphatidylinositol 3- and 4-kinase
    5.8e-40  135.7   5.7    2.3e-39  133.8   0.6    3.2  3  FRB_dom         FKBP12-rapamycin binding domain
    6.8e-31  107.3   0.0    2.3e-26   92.6   0.0    3.4  3  DUF3385         Domain of unknown function (DUF3385)
    4.2e-12   45.7   2.2    5.7e-12   45.2   0.6    2.1  2  FATC            FATC domain
      4e-06   27.1  16.8      0.023   15.1   0.1    5.6  5  HEAT_2          HEAT repeats
    2.2e-05   24.3  20.9       0.22   11.9   0.1    8.9 10  HEAT            HEAT repeat
    0.00012   21.8   0.9      0.026   14.1   0.0    3.7  4  Tti2            Tti2 family
  ------ inclusion threshold ------
      0.021   13.9   2.8       0.39    9.8   0.5    3.2  3  MMS19_C         RNAPII transcription regulator C-terminal
        2.2    8.9   7.3        2.6    8.6   0.0    4.6  3  TPR_19          Tetratricopeptide repeat
          5    7.7  31.5      0.042   14.4   1.4    7.2  7  HEAT_EZ         HEAT-like repeat


Domain annotation for each model (and alignments):
>> FAT  FAT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.2      0.75   1.2e+03     250     281 ..     855     879 ..     797     909 .. 0.58
   2 !  258.9   0.5   4.4e-80   7.2e-77       1     346 []     927    1243 ..     927    1243 .. 0.92

  Alignments for each domain:
  == domain 1  score: -1.6 bits;  conditional E-value: 0.75
                 TCCCCCCCCCCCT.S...-SSCCHHHHCCHHC CS
         FAT 250 kkGewqealqkldwseekieeilqsysaatei 281
                 +k +w e+lq+        +++l++y + ++ 
  KOO25388.1 855 LKESWYEKLQR-------WNDALHAYERKQQE 879
                 22333333333.......33333333333333 PP

  == domain 2  score: 258.9 bits;  conditional E-value: 4.4e-80
                  CCCTTCCCCTSSSGHHCCCCT....TSSSS--CCCHCCCCHH--CCHCHHCCCHCCCCCCCCCTS---SCCCCCHHHHHCCCCCHHHCHHCCHHCSS CS
         FAT    1 aplaaeaaWrlgqWdsmeeylsvlkkdspdkaffeailalhrnqfdeakeliekarqlldtelsalvgesynraygvlvrvQmlaEleeiiqykqkl 97  
                  a+laa+ aW+l +W++m++y+ ++++d  + ++f+a+la+h+  f +a+ +i++ar  ld e +alvgesy+ray +++ v +l+Eleeii  kq++
  KOO25388.1  927 ARLAAAGAWNLRNWQEMARYCASMPEDAVETSLFRAVLAVHTGAFPAAQVHIDQARRQLDSEFTALVGESYHRAYRIMIGVLQLSELEEIILHKQQP 1023
                  689********************************************************************************************75 PP

                  ----TTTTTTT----TTS-TTTGCCCTTTCCCCTCCCHCCCHCHCCS-STTCCCCCCCCHCHHHHCCSTTHHCCCCCHCTT.........TT.TSSC CS
         FAT   98 ssseklksllktWrkRlpgcqdnvevwqdiltvRslvlspiedllkgvkaemwlkfanlarksgrlslAekaLkelleedp....eewlprappevv 190 
                    +  l  l ++W++R   +q++ evwq il+vR l++ p +d       ++wlkf +l+rk+gr sl+ k+L +ll++dp     + l +a p vv
  KOO25388.1 1024 -AAMPLPLLMRMWQHRIGLVQRDAEVWQEILSVRYLAVPPAQD------PRTWLKFCSLCRKAGRSSLSRKLLVQLLGVDPelhpAHDLGSAEPAVV 1113
                  .888999999*********************************......********************************975544444******* PP

                  CCHHHHHHHCCHHHHHSSCCHHHHCCTSSCCCSS-SS---............HHHHCCCTCCCCCCCCCCC..T.S...-SSCCHHHHCCHHCTCCC CS
         FAT  191 yaylKylwssgeqkealqkLreftsellekkeelqsgleaqkeptnleeftkllarcylkkGewqealqkl..dwseekieeilqsysaateidpsw 285 
                  +a lK lw++g + +al +++ f+     ++   +s               kl a++ lk+G+wq+al        +++i+ +lqs   at ++p++
  KOO25388.1 1114 FAFLKQLWDDGSRPQALARMQSFVH----DP---RST-----------RDPKLAAKTWLKLGQWQRALLTEvhALDTKSISVVLQSLGHATDLNPES 1192
                  *************************....22...222...........234667************9855311356788****************** PP

                  HSTTCCCCHHHHHCCHHHHHHSSSS.S-TCCHHHHCCT..CCHHHHTTTSSTTTCHHHHHC CS
         FAT  286 ykawhtwalfnfevvskeeeqkeeeepedlqeyvvpavkgflksislssenslqdtlRLLt 346 
                  ykawh+wa ++fe+vs+          + l  yvvpa++gf +si+l++e +lqdtlRLLt
  KOO25388.1 1193 YKAWHEWAMLHFEAVSQG---------QGL-AYVVPAISGFVRSIALGRERALQDTLRLLT 1243
                  ****************99.........344.5****************************8 PP

>> PI3_PI4_kinase  Phosphatidylinositol 3- and 4-kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  239.7   0.1   2.5e-74     4e-71       3     249 ..    1523    1770 ..    1521    1771 .. 0.98

  Alignments for each domain:
  == domain 1  score: 239.7 bits;  conditional E-value: 2.5e-74
                      EEEEECSSCHHHHHHHHHHHHHHHHHHHHTTTTCCCT-------EEESSSSEEEEE--TTEEEHHHHHHHHHHHCTTSTCHHHHH.HHHHCHC CS
  PI3_PI4_kinase    3 agiykvgddlrqdelivqvfklmdeelskennpkrrklalktysviplgrkcgiielvassetaaslldeklekkgvpptasves.lrvaldk 94  
                      a+++k+++dlrqde+++q+f+l++++ls ++ + +++l++++ysv+pl++++g+i +va+++t++ l++e++e++++  +++++  l++a+d+
      KOO25388.1 1523 AFLLKGHEDLRQDERVMQLFGLVNTLLSTDRDTSKKDLTIQRYSVVPLSPNSGLISWVAQCDTLHALIKEYREARKILLNIEHRLmLQMAPDY 1615
                      6899***********************************************************************99999999999999**** PP

                      HCCHHHHHCC.HHHHHHTSSTTHHHHHHHHHSSSHHHHHHHHHHHHHHHHHHHHHHHHHT-TT--TTTEEEETTTSEEEESSTTTCCTCSHCS CS
  PI3_PI4_kinase   95 kklkkekklk.fekrtalkpksgllqeFvkkspsaeewlearkqFvrslaklsvldyilgngDRhldNilvdktsgklihIDfGlilpdewkl 186 
                      + l +++kl+ fe+ ++++  ++l + ++ +s +ae wl +r++++rsla++sv++yilg+gDRh++N+++d+ +gk+ hIDfG++++ + ++
      KOO25388.1 1616 DALPVLNKLEvFEHTMENTNGHDLARVLWLRSRNAEHWLLRRTTYTRSLAVMSVVGYILGLGDRHPSNLMLDRLTGKILHIDFGDCFEVAVHR 1708
                      ********************************************************************************************* PP

                      SSS-.SSSSSS-THHHHHHTSTTCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHCCSSC CS
  PI3_PI4_kinase  187 lpfpqekvPfrltrelvlaidpskdeglfresceealealrrdqnlltrllkkavkdglilwe 249 
                       +fp ek+Pfrltr+lv a++ s+ eg fr +ce++ ++lr +++ ++++l++ v+d+li+w+
      KOO25388.1 1709 EKFP-EKIPFRLTRMLVTAMEVSGIEGNFRFTCESVISMLRNNKDSVLAMLEASVHDPLINWR 1770
                      ****.*********************************************************7 PP

>> FRB_dom  FKBP12-rapamycin binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.0       6.7   1.1e+04      18      66 ..     407     456 ..     402     461 .. 0.74
   2 ?    3.1   0.2     0.079   1.3e+02      53      88 ..     852     887 ..     812     890 .. 0.82
   3 !  133.8   0.6   1.4e-42   2.3e-39       1      99 []    1350    1453 ..    1350    1453 .. 0.95

  Alignments for each domain:
  == domain 1  score: -3.1 bits;  conditional E-value: 6.7
     FRB_dom  18 eeAsrlyfgeknveamlklleplhellekgpe.tlreasFaqafgreLke 66 
                   A    f+++ ++ m kll  lh+  ++    tl+  + +  f ++L+e
  KOO25388.1 407 CLALCDEFQRHLATLMPKLLAILHSDCTERRRpTLKVLHALGVFDQNLQE 456
                 55666667888888999999999998877554588888878888888876 PP

  == domain 2  score: 3.1 bits;  conditional E-value: 0.079
     FRB_dom  53 easFaqafgreLkeaeewlkkykkteneedlnqawd 88 
                  ++ ++++ ++L++ +++l+ y+++++e+  n aw 
  KOO25388.1 852 RIELKESWYEKLQRWNDALHAYERKQQEDPANLAWT 887
                 5667789999************************97 PP

  == domain 3  score: 133.8 bits;  conditional E-value: 1.4e-42
     FRB_dom    1 ELiRvAilwhElwhegLeeAsrlyfgeknveamlklleplhellekgpetlreasFaqafgreLkeaeewlkkykkteneed.....lnqawdiyye 92  
                  ELiR++ilwhE+wh gLeeAsrlyfg k+ve+ml++l+plhe+l +gpet+reasF+qafg++L++a+e++++y++  +++d     l+ awdiyy+
  KOO25388.1 1350 ELIRTSILWHEMWHAGLEEASRLYFGAKDVEGMLATLKPLHEMLLEGPETMREASFQQAFGQDLQRAHEHCQRYQQLVDRADlaraeLHAAWDIYYH 1446
                  9*************************************************************************7777776666666********** PP

     FRB_dom   93 vfrrikk 99  
                  vfrri+k
  KOO25388.1 1447 VFRRISK 1453
                  *****86 PP

>> DUF3385  Domain of unknown function (DUF3385)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.0   0.0      0.44   7.2e+02     123     157 ..     155     189 ..     121     193 .. 0.80
   2 !   92.6   0.0   1.4e-29   2.3e-26      10     160 ..     209     370 ..     206     371 .. 0.83
   3 !    9.7   0.0   0.00047      0.77      10     133 ..     420     547 ..     415     555 .. 0.74

  Alignments for each domain:
  == domain 1  score: -0.0 bits;  conditional E-value: 0.44
     DUF3385 123 vpfLdqiipallsvirtteesnlrefllqqLatLv 157
                  p + q++p+ll +++++++s  r + l++L++L 
  KOO25388.1 155 GPSMAQLLPQLLPLLQDQSSSFKRRVALHALSQLL 189
                 56788999999999999999888999999998886 PP

  == domain 2  score: 92.6 bits;  conditional E-value: 1.4e-29
     DUF3385  10 qLLelLlnilkteqsqsirrevikllGilGALDPykhkqveeraedk............krreeaaretdlsll.mvglspsneeyyptvvinaLlril 95 
                  LL++Ll +l teq+ s+r+e ++ lG+lGA DP ++ q++ + +++            +   +++r++  s l   +++p++ ++yp+v+++aL ril
  KOO25388.1 209 MLLSTLLAMLGTEQEPSTRLELLRSLGTLGAPDPSTQIQIQLARQRTasaaigggigrgD--LASERSP-ASDLdDDTIEPTHPDFYPSVALRALTRIL 304
                 59**********************************977776533333445566664322..2222222.2333255779999**************** PP

     DUF3385  96 kdpslsshhaavveaimnifktlg..lkcvpfLdqiipallsvirtteesnlrefllqqLatLvsiv 160
                 +d+sls +h +v+ a++ i+++lg  ++c+pfL+ ++p+ll++ ++  + +lre+ l+qL++L+ i+
  KOO25388.1 305 RDASLSAQHGMVICAMVGILRSLGgaSQCLPFLPVVLPRLLHTGHNGGP-QLREVALEQLGHLIGII 370
                 **********************9844678*****************999.**************998 PP

  == domain 3  score: 9.7 bits;  conditional E-value: 0.00047
     DUF3385  10 qLLelLlnilkteqsqsirrevikllGilGALDPykhkqveeraedk...krreeaare...tdlsllmvglspsn.eeyyptvvinaLlrilkdpsls 101
                 +L+  Ll il+++  ++ rr ++k+l  lG  D   + +++   ++     ++++a r+     + l+    s  +  ey ++  ++ L+r+l+ ++ +
  KOO25388.1 420 TLMPKLLAILHSD-CTERRRPTLKVLHALGVFDQNLQEHLHLVVPAVlrlCEQHDAPRHarsRAVRLFGRLCSRLDlREY-ASQLLHGLMRVLRGAA-D 515
                 79999******88.6778***************99997777765554444223333333111444444444466665555.55599*******8766.7 PP

     DUF3385 102 shhaavveaimnifktlglkcvpfLdqiipal 133
                 + +++v+ ++   +++lg     f + ++ +l
  KOO25388.1 516 EERNHVLATLCALLSSLGADFAVFAPPVVAEL 547
                 79999***************999999999876 PP

>> FATC  FATC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.0       1.8   2.9e+03       7      16 ..    1336    1345 ..    1334    1358 .. 0.82
   2 !   45.2   0.6   3.5e-15   5.7e-12       2      32 .]    1949    1979 .]    1948    1979 .] 0.98

  Alignments for each domain:
  == domain 1  score: -1.8 bits;  conditional E-value: 1.8
        FATC    7 QVdrLIkeAT 16  
                  Q d+L+++A 
  KOO25388.1 1336 QCDHLVEQAS 1345
                  99*******6 PP

  == domain 2  score: 45.2 bits;  conditional E-value: 3.5e-15
        FATC    2 LsveqQVdrLIkeATdpeNLaqmyiGWcPww 32  
                  L+v  QV+rL+ eA +  NL+q+yiGWcP+w
  KOO25388.1 1949 LDVATQVNRLVVEAQSELNLCQLYIGWCPFW 1979
                  99***************************** PP

>> HEAT_2  HEAT repeats
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.0   1.6   3.1e-05     0.051       8      67 ..      14      84 ..       7     108 .. 0.66
   2 !   15.1   0.1   1.4e-05     0.023       1      62 [.     162     241 ..     162     257 .. 0.80
   3 ?   -3.7   0.0       9.9   1.6e+04      14      41 ..     353     386 ..     349     390 .. 0.73
   4 ?    4.8   0.7     0.023        37       2      59 ..     423     490 ..     421     533 .. 0.63
   5 ?   -1.5   0.0       2.1   3.5e+03      52      81 ..    1315    1343 ..    1286    1349 .. 0.79

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 3.1e-05
      HEAT_2  8 lendpdpevrraairaLg....rignpealpaLvell.ededpavRraaaeaLgaigd.......pealpaL 67
                +  dp  evr a++r+L         ++  + Lv l+ +de+   R+aa+  Lg++++       p+   +L
  KOO25388.1 14 V-ADPASEVRLAVLRELTpafdLSLAQTGKWELVMLAlSDENVGAREAAIAVLGRLARlnpahlmPALRTHL 84
                4.7999************98863344566777777666****************997433222223333333 PP

  == domain 2  score: 15.1 bits;  conditional E-value: 1.4e-05
      HEAT_2   1 ldaLlqalendpdpevrraairaLg...............rignpea..lpaLvell.ededpavRraaaeaLgaigdpe 62 
                 l++Ll +l++ ++   rr a++aL                 i++p+a  l +L+ +l + ++p +R +  ++Lg +g p+
  KOO25388.1 162 LPQLLPLLQDQSSSFKRRVALHALSqllrstgypsehavyGIASPSAmlLSTLLAMLgTEQEPSTRLELLRSLGTLGAPD 241
                 689*****99999999*********766666555555555555555577********66678***************876 PP

  == domain 3  score: -3.7 bits;  conditional E-value: 9.9
      HEAT_2  14 pevrraairaLg......rignpealpaLvelle 41 
                 p++r  a+++Lg       ++ + ++pa++ l++
  KOO25388.1 353 PQLREVALEQLGhligiiGLHVRGYVPAVLALAQ 386
                 6788889999997666666666677777777765 PP

  == domain 4  score: 4.8 bits;  conditional E-value: 0.023
      HEAT_2   2 daLlqalendpdpevrr...aairaLg..rignpea....lpaLvelleded..pavRraaaeaLgaig 59 
                 ++Ll++l ++ ++e rr   ++++aLg  +++ +e     +pa+++l+e +d  ++ R  a++  g++ 
  KOO25388.1 423 PKLLAIL-HSDCTERRRptlKVLHALGvfDQNLQEHlhlvVPAVLRLCEQHDapRHARSRAVRLFGRLC 490
                 6899999.66666666623366677777744444444556********655544589*****9998774 PP

  == domain 5  score: -1.5 bits;  conditional E-value: 2.1
      HEAT_2   52 aeaLgaigdpealpaLkellddddddvvRe 81  
                   +++++ + ++al++L+e+ ++ d+ +v +
  KOO25388.1 1315 SKSMSEPRQSAALRVLQEMRRQCDH-LVEQ 1343
                  4678888888899999997666544.4444 PP

>> HEAT  HEAT repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.2   0.0      0.17   2.8e+02       5      22 ..      10      27 ..       6      30 .. 0.82
   2 !    6.9   0.1    0.0055         9       6      29 ..      47      70 ..      44      71 .. 0.87
   3 ?   -2.8   0.0       7.2   1.2e+04       2      28 ..      85     111 ..      84     111 .. 0.81
   4 !   11.9   0.1   0.00014      0.22       1      29 [.     161     190 ..     161     192 .. 0.87
   5 ?    0.9   0.0      0.44   7.2e+02       1      27 [.     210     237 ..     210     239 .. 0.93
   6 ?   -2.0   0.0       3.9   6.4e+03      14      28 ..     353     367 ..     353     369 .. 0.86
   7 ?   -0.4   0.0       1.2   1.9e+03       1      27 [.     421     447 ..     421     448 .. 0.83
   8 !    8.7   0.2    0.0014       2.2       1      30 [.     461     492 ..     461     493 .. 0.93
   9 ?   -2.7   0.5       6.6   1.1e+04      19      30 ..     713     724 ..     712     725 .. 0.87
  10 ?   -1.6   0.0       2.9   4.7e+03       3      29 ..    1275    1301 ..    1273    1303 .. 0.86

  Alignments for each domain:
  == domain 1  score: 2.2 bits;  conditional E-value: 0.17
                HHHHHT-SSHHHHHHHHH CS
        HEAT  5 llkllsDpspeVReaAak 22
                l+    Dp++eVR a+++
  KOO25388.1 10 LIVGVADPASEVRLAVLR 27
                556678*********986 PP

  == domain 2  score: 6.9 bits;  conditional E-value: 0.0055
                HHHHT-SSHHHHHHHHHHHHHHHH CS
        HEAT  6 lkllsDpspeVReaAakaLgalae 29
                + +lsD++   ReaA+  Lg+la+
  KOO25388.1 47 MLALSDENVGAREAAIAVLGRLAR 70
                5569******************95 PP

  == domain 3  score: -2.8 bits;  conditional E-value: 7.2
                 HHHHHHHHT-SSHHHHHHHHHHHHHHH CS
        HEAT   2 lPlllkllsDpspeVReaAakaLgala 28 
                 ++ll++  ++ps   Re Aa  Lg+l+
  KOO25388.1  85 FDLLIEIEHSPSGVRREDAAHLLGKLV 111
                 567778668889899**9*****9985 PP

  == domain 4  score: 11.9 bits;  conditional E-value: 0.00014
                 HHHHHHHHHT-SSHH.HHHHHHHHHHHHHH CS
        HEAT   1 llPlllkllsDpspe.VReaAakaLgalae 29 
                 llP ll ll+D+s++  R+ A+ aL +l++
  KOO25388.1 161 LLPQLLPLLQDQSSSfKRRVALHALSQLLR 190
                 89*********666638**********975 PP

  == domain 5  score: 0.9 bits;  conditional E-value: 0.44
                 HHHHHHHHH.T-SSHHHHHHHHHHHHHH CS
        HEAT   1 llPlllkll.sDpspeVReaAakaLgal 27 
                 ll +ll +l + ++p+ R   +++Lg+l
  KOO25388.1 210 LLSTLLAMLgTEQEPSTRLELLRSLGTL 237
                 7899*****999**************98 PP

  == domain 6  score: -2.0 bits;  conditional E-value: 3.9
                 HHHHHHHHHHHHHHH CS
        HEAT  14 peVReaAakaLgala 28 
                 p+ Re A++ Lg+l+
  KOO25388.1 353 PQLREVALEQLGHLI 367
                 567*********985 PP

  == domain 7  score: -0.4 bits;  conditional E-value: 1.2
                 HHHHHHHHHT-SSHHHHHHHHHHHHHH CS
        HEAT   1 llPlllkllsDpspeVReaAakaLgal 27 
                 l+P ll  l++++ e R+ ++k L al
  KOO25388.1 421 LMPKLLAILHSDCTERRRPTLKVLHAL 447
                 89*******998888898888777766 PP

  == domain 8  score: 8.7 bits;  conditional E-value: 0.0014
                 HHHHHHHHH.T-SSHHH.HHHHHHHHHHHHHC CS
        HEAT   1 llPlllkll.sDpspeV.ReaAakaLgalaev 30 
                 ++P++l+l+ ++++p+  R+ A++ +g+l++ 
  KOO25388.1 461 VVPAVLRLCeQHDAPRHaRSRAVRLFGRLCSR 492
                 58**************88************85 PP

  == domain 9  score: -2.7 bits;  conditional E-value: 6.6
                 HHHHHHHHHHHC CS
        HEAT  19 aAakaLgalaev 30 
                 aA++a++ la+v
  KOO25388.1 713 AALRACASLAQV 724
                 99*******997 PP

  == domain 10  score: -1.6 bits;  conditional E-value: 2.9
                  HHHHHHHT-SSHHHHHHHHHHHHHHHH CS
        HEAT    3 PlllkllsDpspeVReaAakaLgalae 29  
                  P ++  +++p   VR+++ + L ++a+
  KOO25388.1 1275 PQIIARIHSPIVAVRRSVHLLLNRVAK 1301
                  88999999********99998888876 PP

>> Tti2  Tti2 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.1   0.0      0.28   4.6e+02     123     154 ..     160     192 ..     156     204 .. 0.88
   2 ?   -1.3   0.0      0.76   1.2e+03     228     274 ..     341     389 ..     298     395 .. 0.82
   3 ?    2.5   0.1     0.052        85      99     150 ..     397     447 ..     393     448 .. 0.86
   4 !   14.1   0.0   1.6e-05     0.026     116     158 ..     453     497 ..     446     513 .. 0.84

  Alignments for each domain:
  == domain 1  score: 0.1 bits;  conditional E-value: 0.28
        Tti2 123 livPpiLnllDdtdtsvKlr.GlklLqtllekl 154
                  + P +L ll d++ s+K r +l+ L++ll ++
  KOO25388.1 160 QLLPQLLPLLQDQSSSFKRRvALHALSQLLRST 192
                 5789************99876999999999875 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 0.76
        Tti2 228 lsglsh.ases.prlvellleqlsevveelgistvkhLkrlipllseil 274
                 l+ l h   +  p+l e+ leql  ++  +g ++  ++  ++ l  e l
  KOO25388.1 341 LPRLLHtGHNGgPQLREVALEQLGHLIGIIGLHVRGYVPAVLALAQEHL 389
                 45555533344799******************99999888887776655 PP

  == domain 3  score: 2.5 bits;  conditional E-value: 0.052
        Tti2  99 lkaisvlawiirqlqskeieanwplivPpiLnllDdtdtsvKlrGlklLqtl 150
                 +++i+vl+ +   l ++ +++++  ++P +L++l ++ t+ +   lk+L+ l
  KOO25388.1 397 VHCIAVLEQLCLALCDE-FQRHLATLMPKLLAILHSDCTERRRPTLKVLHAL 447
                 67888887776666666.67****************************9976 PP

  == domain 4  score: 14.1 bits;  conditional E-value: 1.6e-05
        Tti2 116 eieanwplivPpiLnllDdtd..tsvKlrGlklLqtlleklessk 158
                 +++++++l+vP++L l++++d     + r+++l  +l+++l+  +
  KOO25388.1 453 NLQEHLHLVVPAVLRLCEQHDapRHARSRAVRLFGRLCSRLDLRE 497
                 4789*****************99999*************998665 PP

>> MMS19_C  RNAPII transcription regulator C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.1   0.1       0.1   1.6e+02     332     363 ..     160     192 ..     133     230 .. 0.79
   2 ?    9.8   0.5   0.00024      0.39     371     423 .]     417     468 ..     414     468 .. 0.94
   3 ?    0.2   0.0      0.19   3.1e+02      19      77 ..     479     545 ..     470     569 .. 0.71

  Alignments for each domain:
  == domain 1  score: 1.1 bits;  conditional E-value: 0.1
     MMS19_C 332 tvlpklvegfks.sdsetkenyLvALshllkhv 363
                 ++lp+l+   ++ s+s ++ + L ALs+ll+++
  KOO25388.1 160 QLLPQLLPLLQDqSSSFKRRVALHALSQLLRST 192
                 566666666666566666667777777777665 PP

  == domain 2  score: 9.8 bits;  conditional E-value: 0.00024
     MMS19_C 371 eLptLlPlLlqaLdlpdaevkastLetlksileespslvsehlssLvprLLkl 423
                 +L tL+P Ll  L+ + +e ++ tL++l+++    ++ ++ehl+ +vp  L+l
  KOO25388.1 417 HLATLMPKLLAILHSDCTERRRPTLKVLHALGV-FDQNLQEHLHLVVPAVLRL 468
                 9***************************99988.79************99975 PP

  == domain 3  score: 0.2 bits;  conditional E-value: 0.19
     MMS19_C  19 yervLeaLaelssekqlfetlvirllnkldlvlksnessaayahailstllkllekkq...........t 77 
                 ++r+   +++l+s+ +l e+ +  ll  l  vl+ +++  +   ++l tl++ll+               
  KOO25388.1 479 RSRAVRLFGRLCSRLDLREYAS-QLLHGLMRVLRGAAD--EERNHVLATLCALLSSLGadfavfappvvA 545
                 6788889999*******99999.999999999999986..788899999999998755555555555554 PP

>> TPR_19  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.2   0.1       0.7   1.1e+03       8      37 ..      59      90 ..      56      93 .. 0.87
   2 ?    8.6   0.0    0.0016       2.6       6      41 ..     865     900 ..     862     902 .. 0.93
   3 ?   -0.8   0.0       1.4   2.2e+03       2      45 ..    1121    1163 ..    1120    1165 .. 0.69

  Alignments for each domain:
  == domain 1  score: 0.2 bits;  conditional E-value: 0.7
      TPR_19  8 aeAlalleqalqedpk..naearllLAealla 37
                ++A+a l ++   +p   ++++r  L ++l++
  KOO25388.1 59 EAAIAVLGRLARLNPAhlMPALRTHLFDLLIE 90
                7899999999999**99999999999999986 PP

  == domain 2  score: 8.6 bits;  conditional E-value: 0.0016
      TPR_19   6 dyaeAlalleqalqedpknaearllLAeallalgql 41 
                 +  +Al ++e+  qedp n++   + ++++ alg++
  KOO25388.1 865 RWNDALHAYERKQQEDPANLAWTVGRMRCHHALGEW 900
                 6789******************************98 PP

  == domain 3  score: -0.8 bits;  conditional E-value: 1.4
      TPR_19    2 laegdyaeAlalleqalqedpknaearllLAeallalgqldeAe 45  
                  +++g   +Ala++++ + +dp + +   l A+  l+lgq++ A 
  KOO25388.1 1121 WDDGSRPQALARMQS-FVHDPRSTRDPKLAAKTWLKLGQWQRAL 1163
                  566777778888888.445555444444589999*****99995 PP

>> HEAT_EZ  HEAT-like repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.0   1.1    0.0053       8.6       4      26 ..      58      80 ..      56     110 .. 0.67
   2 ?    1.6   0.1      0.25   4.1e+02       4      40 ..     100     136 ..      96     138 .. 0.83
   3 ?   14.4   1.4   2.6e-05     0.042       6      55 .]     138     188 ..     136     188 .. 0.89
   4 ?   -3.3   0.1       8.7   1.4e+04      18      34 ..     329     345 ..     326     345 .. 0.82
   5 ?   -0.9   0.1       1.5   2.5e+03      23      41 ..     415     433 ..     399     436 .. 0.75
   6 ?    3.2   0.1     0.081   1.3e+02      10      55 .]     446     489 ..     441     489 .. 0.76
   7 ?    1.0   0.1      0.38   6.3e+02       4      53 ..     479     530 ..     477     532 .. 0.64

  Alignments for each domain:
  == domain 1  score: 7.0 bits;  conditional E-value: 0.0053
     HEAT_EZ  4 RraAawaLGrlaggepellqplv 26
                R+aA+++LGrla  +p +l p++
  KOO25388.1 58 REAAIAVLGRLARLNPAHLMPAL 80
                9*********9999999987743 PP

  == domain 2  score: 1.6 bits;  conditional E-value: 0.25
     HEAT_EZ   4 RraAawaLGrlaggepellqplvpeilpaLlalLndd 40 
                 R+ Aa  LG l   +p+l++p+ + +l+ L +  +d+
  KOO25388.1 100 REDAAHLLGKLVCAAPQLIKPYASTVLRVLQPQVSDS 136
                 566666899966689***************9988876 PP

  == domain 3  score: 14.4 bits;  conditional E-value: 2.6e-05
     HEAT_EZ   6 aAawaLGrlaggepellqplvpeilpaLlalLnddsdeV.RaaAagaLgnl 55 
                 aA++ LG+l ++++ ++ p   ++lp+Ll+lL+d s++  R  A++aL++l
  KOO25388.1 138 AALASLGELSVVAGGAVGPSMAQLLPQLLPLLQDQSSSFkRRVALHALSQL 188
                 7888****************************9977777899999999886 PP

  == domain 4  score: -3.3 bits;  conditional E-value: 8.7
     HEAT_EZ  18 epellqplvpeilpaLl 34 
                 ++ ++ p++p++lp Ll
  KOO25388.1 329 GASQCLPFLPVVLPRLL 345
                 55677899******997 PP

  == domain 5  score: -0.9 bits;  conditional E-value: 1.5
     HEAT_EZ  23 qplvpeilpaLlalLndds 41 
                 q ++  ++p Lla L +d+
  KOO25388.1 415 QRHLATLMPKLLAILHSDC 433
                 4466689999999996665 PP

  == domain 6  score: 3.2 bits;  conditional E-value: 0.081
     HEAT_EZ  10 aLGrlaggepellqplvpeilpaLlalL.nddsd.eVRaaAagaLgnl 55 
                 aL    g+ ++ lq ++  ++pa l+l  ++d + + R  A++ +g+l
  KOO25388.1 446 AL----GVFDQNLQEHLHLVVPAVLRLCeQHDAPrHARSRAVRLFGRL 489
                 45....4445566777778888888888677888999********997 PP

  == domain 7  score: 1.0 bits;  conditional E-value: 0.38
     HEAT_EZ   4 RraAawaLGrlaggepellqplvpeilpaLl...alLnddsd.eVRaaAagaLg 53 
                 R  A++ +Grl+   + +l+ + +++l  L+   ++  d++  +V a+ +  L+
  KOO25388.1 479 RSRAVRLFGRLC--SRLDLREYASQLLHGLMrvlRGAADEERnHVLATLCALLS 530
                 567889999866..5667888888888888844433333333477666666666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1979 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       550  (0.0306766); expected 358.6 (0.02)
Passed bias filter:                      418  (0.0233142); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 1.02u 0.32s 00:00:01.34 Elapsed: 00:00:00.46
# Mc/sec: 12873.90
//
Query:       KOO25389.1  [L=211]
Description: hypothetical protein Ctob_007057 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.8e-15   57.0   0.0    2.2e-14   53.5   0.0    2.1  1  TAFII55_N  TAFII55 protein conserved region


Domain annotation for each model (and alignments):
>> TAFII55_N  TAFII55 protein conserved region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.5   0.0   1.2e-18   2.2e-14       2     151 ..       6     136 ..       5     139 .. 0.83

  Alignments for each domain:
  == domain 1  score: 53.5 bits;  conditional E-value: 1.2e-18
   TAFII55_N   2 EeqfiLRlppeeaeklreaiesgdvnkdklsiklekderravvkidgklyaaklvDLPtiiEslKtiDkknlyKtaDisqmllvkeeeeakkeeeleee 100
                 Ee ++L +p++   +lr+ +  ++    +l++ +   + + +v +dg  ++a l  LPt++E++K+iD  +++K  +i ++l+ +    a         
  KOO25389.1   6 EELMLLNVPDDVGVRLRKFLAGDE--GVRLEVAF-APNGNPEVYVDGMPLHASLTSLPTVVEVHKSIDGSTFFKAGEIGRVLVTQPL-VA--------- 91 
                 677889999999999999999988..89999999.888899****************************************999222.11......... PP

   TAFII55_N 101 kskkkkkekkkekkfqyphGitpPlknvrkrRFrkrlkk..keieavekevkr 151
                           +    ++p+G+tpP  ++r+r++rkr  +   e+e v  e++ 
  KOO25389.1  92 ------A--ASPAAAELPDGLTPPAVDIRRRKWRKRPARdpAEVEHVAVELEA 136
                 ......1..24567889******************987722445556666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (211 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       544  (0.0303419); expected 358.6 (0.02)
Passed bias filter:                      463  (0.0258241); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.22s 00:00:00.67 Elapsed: 00:00:00.39
# Mc/sec: 1605.59
//
Query:       KOO25390.1  [L=142]
Description: hypothetical protein Ctob_007058 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.7e-27   95.4   0.1    4.5e-27   95.1   0.1    1.1  1  Ribosomal_L28e  Ribosomal L28e protein family


Domain annotation for each model (and alignments):
>> Ribosomal_L28e  Ribosomal L28e protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   95.1   0.1   2.5e-31   4.5e-27       1     114 [.       7     132 ..       7     133 .. 0.91

  Alignments for each domain:
  == domain 1  score: 95.1 bits;  conditional E-value: 2.5e-31
  Ribosomal_L28e   1 LiWelvrnnnsFlvkt.......rtsnkqtFsrepyNltglhsrkysglanskavtVr.eekkgvvlvtkkkerah..kpakawekvklsknsrk 85 
                     LiW +vr+ ++++ ++        + ++  F++ep+Nltgl+  kysglansk++++  + +kgvvl+tk++++a   kpaka++kv++++++r+
      KOO25390.1   7 LIWGIVRDTSCHVLRRkqvgrsgMGPRGAEFTTEPNNLTGLNAWKYSGLANSKTIDLAsAGEKGVVLTTKSTDKASvgKPAKALKKVTYTRDFRR 101
                     89*********9999777887775568899****************************66699*********555555***************** PP

  Ribosomal_L28e  86 alkqiakll..kkyrpdlrkaalaRlskitq 114
                     ++k+i+k++  + yr+dl+kaala++s i+ 
      KOO25390.1 102 IAKAIKKQTseTFYRSDLQKAALAKWSLIYA 132
                     *********97667************99876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (142 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       551  (0.0307323); expected 358.6 (0.02)
Passed bias filter:                      306  (0.0170673); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.21s 00:00:00.56 Elapsed: 00:00:00.36
# Mc/sec: 1196.19
//
Query:       KOO25391.1  [L=197]
Description: ribonuclease h [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    7.9e-33  113.7   0.0    1.2e-32  113.1   0.0    1.1  1  RNase_H   RNase H
  ------ inclusion threshold ------
       0.11   12.3   0.0       0.23   11.3   0.0    1.8  1  RVT_3     Reverse transcriptase-like


Domain annotation for each model (and alignments):
>> RNase_H  RNase H
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  113.1   0.0   1.3e-36   1.2e-32       5     138 ..      60     193 ..      57     196 .. 0.91

  Alignments for each domain:
  == domain 1  score: 113.1 bits;  conditional E-value: 1.3e-36
                 EEEEEEEEECTTTCEEEEEEECTT..EEEEEEEC.CCCHHHHHHHHHHHHHHHTT.SCSEEEEEES-HHHHHHHHCCCHHHHHTTSSSETTSSBHTTHH CS
     RNase_H   5 vvYtDGsclgnpgeggagavlykegarnisaple.eaqtnnraELsAvieaLkalksdekvniytDSkYvvkgitqwvhrwkknawkttseqkpvknkd 102
                  ++tDGsc  npg+gg+g+v+ ++g+  +s + e  ++tnnr+ELsA++ aL+   +de   iytDS+  v ++t+w  rw++n+w +++ + ++kn d
  KOO25391.1  60 GIFTDGSCTPNPGPGGWGIVAVRDGKVLWSDRGEeRETTNNRMELSAIVFALRRIGEDEGGIIYTDSNLCVRTLTEWAPRWERNNWTRAQGE-QIKNLD 157
                 59*****************999998888887777689****************99999****************************666555.7***** PP

                 HHHHHHHCHC.SSEEEEEE-SCCSSSTHHHHHHHHHH CS
     RNase_H 103 laellkelak.kkkvqlkwvkgHaGvpkgNemaDrlA 138
                 l +++ +la+ +  v++kw ++HaG +  Ne aD lA
  KOO25391.1 158 LVQEALTLARaRPGVEFKWLRAHAGST-WNEYADILA 193
                 *9999999995667************5.*******99 PP

>> RVT_3  Reverse transcriptase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   2.5e-05      0.23       2      55 ..      63     114 ..      62     193 .. 0.87

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 2.5e-05
       RVT_3   2 fdgafkkksgaggagvvirdsnGevllagaeklqgkasveeAElqALlrGLqla 55 
                 +dg+++ + g gg+g+v +  +G+vl++ +   ++ +++   El+A++++L+ +
  KOO25391.1  63 TDGSCTPNPGPGGWGIVAVR-DGKVLWSDRGE-ERETTNNRMELSAIVFALRRI 114
                 79*************99875.69999999999.9999*************9865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (197 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       339  (0.0189079); expected 358.6 (0.02)
Passed bias filter:                      269  (0.0150036); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.39u 0.26s 00:00:00.65 Elapsed: 00:00:00.40
# Mc/sec: 1466.39
//
Query:       KOO25392.1  [L=277]
Description: 1,4-alpha-glucan-branching enzyme, partial [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.1e-08   35.1   0.0    1.8e-06   27.7   0.0    2.1  2  Alpha-amylase  Alpha amylase, catalytic domain


Domain annotation for each model (and alignments):
>> Alpha-amylase  Alpha amylase, catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.7   0.0     1e-10   1.8e-06      32      82 ..      10      60 ..       6      85 .. 0.88
   2 !    5.4   0.0   0.00062        11     158     177 ..     105     124 ..      94     155 .. 0.81

  Alignments for each domain:
  == domain 1  score: 27.7 bits;  conditional E-value: 1e-10
                   TTTTSS-SCECCE-CCC--CCCCCCHHHHHHCTT-EEEEEE--SC--TTSC CS
  Alpha-amylase 32 adhgYdiadytkidpefGtnedlkeLiskahekgikvilDlVvNHtsdehe 82
                   a +gY ++ + +   +fGt ++l+eLi++ah  g++v++ lV  H s ++ 
     KOO25392.1 10 ASFGYQVTSFFAPSSRFGTPAELQELIDAAHGHGLQVFVELVHSHASANSR 60
                   679********************************************9876 PP

  == domain 2  score: 5.4 bits;  conditional E-value: 0.00062
                    CCCCCCTTT-SEEEETTCCC CS
  Alpha-amylase 158 vvkfwlekgidGfRlDvvkh 177
                    v++f     idGfR D+v+ 
     KOO25392.1 105 VCWFAEAYRIDGFRFDAVST 124
                    455555555********985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (277 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       261  (0.0145574); expected 358.6 (0.02)
Passed bias filter:                      244  (0.0136092); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.24s 00:00:00.68 Elapsed: 00:00:00.42
# Mc/sec: 2002.15
//
Query:       KOO25393.1  [L=601]
Description: coiled-coil domain-containing protein 93 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.6e-53  180.9   0.0    2.6e-53  180.9   0.0    3.8  3  KOG2701       Coiled-coil domain-containing protein (DUF2037)
     0.0024   18.2   6.3     0.0024   18.2   6.3    3.9  4  Muted         Organelle biogenesis, Muted-like protein
  ------ inclusion threshold ------
       0.26   11.3   6.2        4.9    7.2   0.8    3.3  3  Baculo_PEP_C  Baculovirus polyhedron envelope protein, PEP, C
       0.73   10.6   6.9       0.57   10.9   0.3    3.5  3  PMC2NT        PMC2NT (NUC016) domain
        2.6    8.5   8.3         10    6.6   2.0    3.7  4  DUF4208       Domain of unknown function (DUF4208)


Domain annotation for each model (and alignments):
>> KOG2701  Coiled-coil domain-containing protein (DUF2037)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  180.9   0.0   7.4e-57   2.6e-53       2     177 .]      24     199 ..      23     199 .. 0.96
   2 ?   -4.0   4.6       4.1   1.5e+04      96      96 ..     383     383 ..     250     429 .. 0.66
   3 ?   -6.7   9.3         5   1.8e+04      99     146 ..     386     433 ..     373     595 .. 0.66

  Alignments for each domain:
  == domain 1  score: 180.9 bits;  conditional E-value: 7.4e-57
     KOG2701   2 eeildlLvaaGYfrarikslsaFDkivgGltwcieasnvdvdvdllFqenktigekialtekivkalekmkCPlelephqiqglDfsailpvvqWLvkr 100
                 +e++dlLvaaGY+rari+sl++FDkivgG++wc++a +vdvdv+  F en+tig+ki++ e+i + l+ mkC + l++hqiqglD++ai+pvvqWLvk+
  KOO25393.1  24 DELVDLLVAAGYHRARISSLAPFDKIVGGMAWCMTATSVDVDVE--FLENATIGQKIKIGENIERTLKFMKCRIPLQAHQIQGLDYAAIFPVVQWLVKQ 120
                 7899********************************99999999..9**************************************************** PP

     KOG2701 101 vletreekadflrkfaalqfskayelledke.ekkkekvakevkaleeeykpkRkfkrkaaekkd.eearvkstlleYg 177
                 +   ree ad +r+++a+qf ++y l++d e +++++ +  + ++l + y+p R+f+ k++   +  + +++++l+e+g
  KOO25393.1 121 AYAFREEIADATRRLSANQFDRNYVLPADAElATRRAAARPTGQRLCTCYAPVRRFRPKSHGGASvAALHARRVLMEFG 199
                 *******************************88889999******************99995555499999******97 PP

  == domain 2  score: -4.0 bits;  conditional E-value: 4.1
     KOG2701  96 W 96 
                 +
  KOO25393.1 383 F 383
                 2 PP

  == domain 3  score: -6.7 bits;  conditional E-value: 5
     KOG2701  99 krvletreekadflrkfaalqfskayelledkeekkkekvakevkale 146
                 +r++++++e +++  +  + + s+ ++l++d+++++ ++ ++++ ++e
  KOO25393.1 386 ERMSQQKSEFKKQCARQMEEMNSELASLEQDQAKSADDDETANLVEIE 433
                 445555444444444444444444444555544333333333333222 PP

>> Muted  Organelle biogenesis, Muted-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.9   7.4         5   1.8e+04      61      75 ..     305     319 ..     202     370 .. 0.59
   2 ?   -2.8  12.5         2   7.3e+03      35     130 ..     312     412 ..     304     438 .. 0.65
   3 ?    0.3   8.0      0.22   7.9e+02      38     113 ..     375     449 ..     362     487 .. 0.63
   4 !   18.2   6.3   6.7e-07    0.0024      27     121 ..     502     597 ..     492     599 .. 0.86

  Alignments for each domain:
  == domain 1  score: -4.9 bits;  conditional E-value: 5
       Muted  61 esmkenLselnkkle 75 
                 e+ + +L++  ++l+
  KOO25393.1 305 EATERQLEHERRQLQ 319
                 222222222222222 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 2
       Muted  35 drevelLenikklvnelkeqll..pkclesmkenLselnkkleaalekverllqkeleeekrkseqlqeke...eerkaeweeflkelqekkeevDeef 128
                 ++e ++L+++   +  + ++l   + +++++++++ ++ ++  ++  ++ +l+ + +++  ++  +lqe     e++ ++++ef+k+ +++ ee++ e 
  KOO25393.1 312 EHERRQLQQVADRAAAVAASLAagEALKAQVHKQMGTIAAERAELAREMAELEAQAASAPPEELAKLQELVflcERMSQQKSEFKKQCARQMEEMNSEL 410
                 566666776666666665554322455666777777777666666666777777766666666666666666667777777777777777777776665 PP

       Muted 129 ee 130
                 + 
  KOO25393.1 411 AS 412
                 44 PP

  == domain 3  score: 0.3 bits;  conditional E-value: 0.22
       Muted  38 velLenikklvnelkeqllpkclesmkenLselnkkleaalekverllqkeleeekrkseqlqekeeerkaeweef 113
                 + +L+++  l + +++ +  +++++ + +++e+n++l  + ++  +  ++++ ++  + e+l+++e+ + +++  +
  KOO25393.1 375 LAKLQELVFLCERMSQ-QKSEFKKQCARQMEEMNSELASLEQDQAKSADDDETANLVEIERLHAAEDGKASQMRRL 449
                 4444444444444433.35566666677777777777777776666666666666666777776665555555554 PP

  == domain 4  score: 18.2 bits;  conditional E-value: 6.7e-07
       Muted  27 keFEekRg..drevelLenikklvnelkeqllpkclesmkenLselnkkleaalekverllqkeleeekrkseqlqekeeerkaeweeflkelqekk 121
                 + +Eek+g   +ev+lL++i+++ ++  +   ++++es++  L++++++l+++ +  ++  +  + + +++ ++l ek++++ + ++e+  e q+++
  KOO25393.1 502 NTLEEKKGylSKEVSLLNSIHENYTKAAAGNKDRIVESVEGLLKSVQQNLQKVEQRLKDAVSARDAT-QQRYDKLVEKQRKYFQLVKEYQAECQRNE 597
                 568999994459*******************************************999988885555.55889999999999999999988888765 PP

>> Baculo_PEP_C  Baculovirus polyhedron envelope protein, PEP, C terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.1   0.4    0.0061        22      24      98 ..     337     414 ..     310     419 .. 0.71
   2 ?   -0.6   0.0      0.36   1.3e+03      46      68 ..     472     494 ..     445     531 .. 0.53
   3 ?    7.2   0.8    0.0014       4.9      42      78 ..     528     564 ..     485     575 .. 0.80

  Alignments for each domain:
  == domain 1  score: 5.1 bits;  conditional E-value: 0.0061
  Baculo_PEP_C  24 airlqnvqilaqlatlldaietqLnalsedlksllaeldt...rldtlltnLtdalnalqdtlrneLtnlnsiltnLl 98 
                   a+++q  + ++ +a+  +++++++ +l+++  s+ +e  +   +l  l ++++++  +++++   +++ +ns+l++L 
    KOO25393.1 337 ALKAQVHKQMGTIAAERAELAREMAELEAQAASAPPEELAklqELVFLCERMSQQKSEFKKQCARQMEEMNSELASLE 414
                   445555555555566666666666666665555555444445555666789999999999999999999999999996 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 0.36
  Baculo_PEP_C  46 qLnalsedlksllaeldtrldtl 68 
                   +L + + ++++l ++++++l+++
    KOO25393.1 472 ELMQYERRFRELNQQVASKLEET 494
                   34444455555555555544443 PP

  == domain 3  score: 7.2 bits;  conditional E-value: 0.0014
  Baculo_PEP_C  42 aietqLnalsedlksllaeldtrldtlltnLtdalna 78 
                   a +++ + + e+++ ll++++++l+++ ++L+da+ a
    KOO25393.1 528 AAAGNKDRIVESVEGLLKSVQQNLQKVEQRLKDAVSA 564
                   445556789999999*************999999865 PP

>> PMC2NT  PMC2NT (NUC016) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.0       3.2   1.1e+04      24      37 ..     313     326 ..     292     359 .. 0.58
   2 ?    1.0   0.5       0.2   7.2e+02      21      55 ..     395     429 ..     386     453 .. 0.69
   3 ?   10.9   0.3   0.00016      0.57      13      82 ..     513     578 ..     510     586 .. 0.83

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 3.2
      PMC2NT  24 efaksldeqserll 37 
                   +++l++ ++r  
  KOO25393.1 313 HERRQLQQVADRAA 326
                 22333333333333 PP

  == domain 2  score: 1.0 bits;  conditional E-value: 0.2
      PMC2NT  21 ldpefaksldeqserllslinsllklaaskseisa 55 
                 ++++ a++++e +++l sl ++ +k+a+ ++ ++ 
  KOO25393.1 395 FKKQCARQMEEMNSELASLEQDQAKSADDDETANL 429
                 55667777888888888888877777777766644 PP

  == domain 3  score: 10.9 bits;  conditional E-value: 0.00016
      PMC2NT  13 eDldfyrsldpefaksldeqserllslinsllklaaskseisassklededdveekfksvvdvvDsllEk 82 
                 ++++  +s++++++k+   +++r++++++ llk+++++ ++ ++ +l+d+ +     ++     D+l Ek
  KOO25393.1 513 KEVSLLNSIHENYTKAAAGNKDRIVESVEGLLKSVQQNLQKVEQ-RLKDAVS---ARDATQQRYDKLVEK 578
                 56788899******************************999665.5555444...888888888888887 PP

>> DUF4208  Domain of unknown function (DUF4208)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.0       4.3   1.5e+04      49      59 ..      79      89 ..      78      92 .. 0.83
   2 ?   -4.0   0.0         5   1.8e+04      42      61 ..     190     209 ..     187     219 .. 0.73
   3 ?    6.6   2.0    0.0028        10       2      40 ..     390     427 ..     389     477 .. 0.83
   4 ?    3.3   0.2     0.031   1.1e+02       9      38 ..     538     567 ..     530     594 .. 0.78

  Alignments for each domain:
  == domain 1  score: -3.5 bits;  conditional E-value: 4.3
     DUF4208 49 kiGdfIdellk 59
                kiG+ I+ +lk
  KOO25393.1 79 KIGENIERTLK 89
                89****99986 PP

  == domain 2  score: -4.0 bits;  conditional E-value: 5
     DUF4208  42 ilkkeLlkiGdfIdellkek 61 
                 + ++ L++ G++++ l++ +
  KOO25393.1 190 HARRVLMEFGTQVSALAAAE 209
                 67889999999998877665 PP

  == domain 3  score: 6.6 bits;  conditional E-value: 0.0028
     DUF4208   2 edesmdeeeckellrpvkksLkrLkkltkekllskkera 40 
                 +++s+++++c + ++ ++++L +L+++++++  +++e a
  KOO25393.1 390 QQKSEFKKQCARQMEEMNSELASLEQDQAKSA-DDDETA 427
                 6789999******************9988854.444443 PP

  == domain 4  score: 3.3 bits;  conditional E-value: 0.031
     DUF4208   9 eeckellrpvkksLkrLkkltkekllskke 38 
                 e+++ ll+ v+++L+++++  k+ +  ++ 
  KOO25393.1 538 ESVEGLLKSVQQNLQKVEQRLKDAVSARDA 567
                 458899***********9998886644444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (601 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2580  (0.143901); expected 358.6 (0.02)
Passed bias filter:                      596  (0.0332422); expected 358.6 (0.02)
Passed Vit filter:                        62  (0.00345808); expected 17.9 (0.001)
Passed Fwd filter:                        18  (0.00100396); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.87u 0.33s 00:00:01.20 Elapsed: 00:00:00.52
# Mc/sec: 3460.29
//
Query:       KOO25394.1  [L=930]
Description: hypothetical protein Ctob_007055 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (930 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       596  (0.0332422); expected 358.6 (0.02)
Passed bias filter:                      304  (0.0169558); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.65u 0.27s 00:00:00.92 Elapsed: 00:00:00.43
# Mc/sec: 6440.42
//
Query:       KOO25395.1  [L=221]
Description: multiple RNA-binding domain-containing protein 1-like protein, partial [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.9e-10   39.8   0.0    4.1e-10   39.4   0.0    1.2  1  RRM_1           RNA recognition motif. (a.k.a. RRM, RBD, or R
  ------ inclusion threshold ------
       0.64   10.4   5.9        1.9    8.9   3.6    2.2  2  CENP-B_dimeris  Centromere protein B dimerisation domain
        5.6    7.4   7.3       0.89   10.0   1.8    2.4  2  PBP1_TM         Transmembrane domain of transglycosylase PBP1


Domain annotation for each model (and alignments):
>> RRM_1  RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.4   0.0   6.8e-14   4.1e-10       1      69 [.       7      76 ..       7      77 .. 0.93

  Alignments for each domain:
  == domain 1  score: 39.4 bits;  conditional E-value: 6.8e-14
                EEEESETTTSSHHHHHHHHHT.TSCEEEEEEEEETTTSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEE CS
       RRM_1  1 lfVgnLppdvteeeLkelFsk.fGpiksiklvrdetgkskgfafVeFeskedAekAlealngkklggrel 69
                l+V++Lp+ ++++ L+ +F+    ++++++++r++ gks++f+fV F + e+A+ A +a  +  ++ +++
  KOO25395.1  7 LIVKGLPKHCDDKRLRSHFEAlSDDVTDVRVMRTREGKSRCFGFVGFRDAEAAAIARKATERSYIDTSRI 76
                78*******************8899*******************************99988888876665 PP

>> CENP-B_dimeris  Centromere protein B dimerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.3   0.0     0.076   4.6e+02      64      96 ..      16      47 ..       6      51 .. 0.72
   2 ?    8.9   3.6   0.00032       1.9      22      42 ..     192     212 ..     182     220 .. 0.52

  Alignments for each domain:
  == domain 1  score: 1.3 bits;  conditional E-value: 0.076
  CENP-B_dimeris 64 piddrvqshilhlehdlvhvtrknharqasvra 96
                      d r++sh   l  d+  v r   +r+  +r+
      KOO25395.1 16 CDDKRLRSHFEALSDDVTDV-RVMRTREGKSRC 47
                    45889********9998766.555566666665 PP

  == domain 2  score: 8.9 bits;  conditional E-value: 0.00032
  CENP-B_dimeris  22 eeeedeededeeddedddevp 42 
                     +ee  ee++++edd + de+p
      KOO25395.1 192 DEEGSEEEDEDEDDSEYDELP 212
                     333333333334444455555 PP

>> PBP1_TM  Transmembrane domain of transglycosylase PBP1 at N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   0.3      0.29   1.7e+03      49      69 ..     107     127 ..      61     132 .. 0.72
   2 ?   10.0   1.8   0.00015      0.89      18      59 ..     180     218 ..     170     221 .] 0.59

  Alignments for each domain:
  == domain 1  score: -0.6 bits;  conditional E-value: 0.29
     PBP1_TM  49 ddeeeevprkgkkkkpprkkr 69 
                   ee+ +p+k+  +  + kkr
  KOO25395.1 107 HPEESASPKKADVGGAKAKKR 127
                 456777788844444333443 PP

  == domain 2  score: 10.0 bits;  conditional E-value: 0.00015
     PBP1_TM  18 akparkkasrrrrrdddyddeyddeedDdddddeeeevprkg 59 
                 a p+r++a +    d++  +  +de +Dd ++de    prkg
  KOO25395.1 180 AGPKRAAAGK--GTDEEGSE-EEDEDEDDSEYDELPAAPRKG 218
                 3444444444..34444333.466667777999999999997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (221 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       500  (0.0278878); expected 358.6 (0.02)
Passed bias filter:                      339  (0.0189079); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.43u 0.26s 00:00:00.69 Elapsed: 00:00:00.42
# Mc/sec: 1570.97
//
Query:       KOO25396.1  [L=505]
Description: ATP-binding cassette superfamily [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.2e-47  161.2   0.2      7e-47  160.4   0.2    1.3  1  PBP_like_2  PBP superfamily domain
  ------ inclusion threshold ------
       0.05   13.6   0.0        0.2   11.8   0.0    2.0  1  TFIIB       Transcription factor TFIIB repeat


Domain annotation for each model (and alignments):
>> PBP_like_2  PBP superfamily domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  160.4   0.2   7.8e-51     7e-47       8     281 ..      30     345 ..      17     346 .. 0.84

  Alignments for each domain:
  == domain 1  score: 160.4 bits;  conditional E-value: 7.8e-51
  PBP_like_2   8 svgeifgaGsttpapalrklada.fekaapgakvnyastGSgagikalrngd.......vdfagsdrplteseiaagwaangaggliqvpvaigaialv 98 
                 +v +++g+G+t+p+ ++++++d   ++++ +++++y+++GSg g+++++++         +f++ d+p+t+  + +++    ++++ +vp+a gai ++
  KOO25396.1  30 QVINVHGSGTTNPQRLFWEAMDLlEGRSKLPLTMTYRGVGSGVGQAEFKGDVttgfksyNHFGSGDIPMTSVLY-NDIRNS-GREMLHVPFALGAISVF 126
                 55579****************999899999999***************************************55.544444.5**************** PP

  PBP_like_2  99 vnkd......nplnlsreaLakIfsgkItnWnd........vlglpadgpIkvvhrsdgsgttflfstalaeq.................gpwt...as 163
                 +n++       p  l+++ LakIf+++It+W++             a+g Ikv +r dgs++   ++++l+ +                    +    +
  KOO25396.1 127 HNVPeaelggAPIDLDACLLAKIFTRQITTWDHpdikalnpK--MTAKGEIKVHRRADGSSSSSGITQYLNGKcpaswvnaagapystgpT--FpsvPG 221
                 **777777666666***********************99652..3479*************************666666666665555430..233333 PP

  PBP_like_2 164 gigasgsegvasav.snngaigyvsvaywlavkgysladvtngagkfvlptaata.asalkvakias....nplawslqpveeniadgayPlsrftyii 256
                 ++ ++gs g+a a+ ++++aigy ++++ +++ g ++ +++n +g++ +++ a++ a+al v+ +++      l+ s ++++++++++++P++ f+y++
  KOO25396.1 222 TTPVQGSQGMADAIdTTPNAIGYMDAGHGHEK-GFAEIALKNRDGVYLTSKNANIgAAALAVLAANAfpvnATLDFSAVNLYDQAGPTTWPIVLFSYFY 319
                 445778*******9899*************99.999999****************88888888887799998888999********************* PP

  PBP_like_2 257 vyqpyayhgnn.aalakaFldyllsd 281
                  + + +  ++  a  +  F++++ls 
  KOO25396.1 320 LDRNLTSMDALsASVLDYFVKFILSP 345
                 ***64433222244444478888775 PP

>> TFIIB  Transcription factor TFIIB repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   2.2e-05       0.2      24      48 ..     440     464 ..     422     466 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 2.2e-05
                 HHTTSTTTTSGCTTHHHTTHHHHHH CS
       TFIIB  24 laleekvlkGrspagiaAAclyiAc 48 
                 ++ + +   G + agia A+++iAc
  KOO25396.1 440 NCISTWCFTGQRLAGIAVASILIAC 464
                 68899******************** PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (505 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       532  (0.0296726); expected 358.6 (0.02)
Passed bias filter:                      421  (0.0234815); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.55u 0.24s 00:00:00.79 Elapsed: 00:00:00.42
# Mc/sec: 3582.68
//
Query:       KOO25397.1  [L=432]
Description: hypothetical protein Ctob_009695 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (432 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2614  (0.145797); expected 358.6 (0.02)
Passed bias filter:                      339  (0.0189079); expected 358.6 (0.02)
Passed Vit filter:                        57  (0.00317921); expected 17.9 (0.001)
Passed Fwd filter:                        13  (0.000725082); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.82u 0.31s 00:00:01.12 Elapsed: 00:00:00.54
# Mc/sec: 2396.40
//
Query:       KOO25398.1  [L=355]
Description: phosphoglycerate mutase [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.3e-12   47.8   0.0    5.8e-11   42.4   0.0    2.2  1  His_Phos_1  Histidine phosphatase superfamily (branch 1)
    3.7e-09   36.5   0.0    5.2e-09   36.0   0.0    1.2  1  RVT_3       Reverse transcriptase-like


Domain annotation for each model (and alignments):
>> His_Phos_1  Histidine phosphatase superfamily (branch 1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.4   0.0   6.5e-15   5.8e-11       1     160 [.     138     325 ..     138     343 .. 0.78

  Alignments for each domain:
  == domain 1  score: 42.4 bits;  conditional E-value: 6.5e-15
                 EEEEE---BTTB--......TT......----B-HHHHHHHHHHHHHHTTS---EEEE-SSHHHHHHHHHHHHCTT....--EEE-GGGS----GGGT. CS
  His_Phos_1   1 lyLvRHGetewnaegr..lqgr......tdvpLteeGreqAealaerlagepidaiysSplkRarqTaeliaealg....lpveldegLrEidfGdwe. 86 
                 l+LvRHG++ +n + +  ++         d+pL+++G++q++ala +    + + i+sSpl Ra+qT   +   l      pvel++   E     ++ 
  KOO25398.1 138 LLLVRHGQSMHNIASVakYGDTgadaslFDAPLSPLGETQVAALAGHELLAKAELIISSPLTRAVQTLFGAFPPLSgappAPVELWPLVSEHLTDSCDi 236
                 68*********888776433222222225888*************99778899**************9888877777888***********99999999 PP

                 T-B.HHHHHH..HSHHHHHHHHH-GGG-B................S-BHHHHHHHHHHHHHHHHHHTTTSEEEEEE-HHHHHHHHHHHHT CS
  His_Phos_1  87 glttaeiaeeypeeleawlrdpadvrppg................gEsledvaaRvaaaleelaarhegetvlvVsHggvirallarllg 160
                 g   ae+a+++p  ++ +l + ++++                    E    +  Rv+a++e+l++r e+  ++++ H  + ++l+ r  g
  KOO25398.1 237 GTGAAELAKRFPTLHASTLPEVWWYTGGVqetaagsreryrecgfMEPELMFIGRVDAFVEKLRQRPESV-IAIFGHSDFFNYLMERHCG 325
                 9999999999999887655555444332222333466666667777777888899999999999998876.9999999999999988665 PP

>> RVT_3  Reverse transcriptase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.0   0.0   5.8e-13   5.2e-09      60     123 ..       1      64 [.       1      65 [. 0.92

  Alignments for each domain:
  == domain 1  score: 36.0 bits;  conditional E-value: 5.8e-13
       RVT_3  60 irrlvvegDsktvvqllngrekvksselanlldeirkllksfesvsvehipReqNrvAdalAkr 123
                 ++rlvv+gDs++++++++g+ +  s++l  l + +++   +f sv+ ehipR+qN+vAd+lA+ 
  KOO25398.1   1 MKRLVVKGDSEVIIKQMTGQYQCLSERLVPLNEYAKEFEGAFMSVRYEHIPRTQNTVADSLASL 64 
                 689*******************888888888888888888**********************85 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (355 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       267  (0.0148921); expected 358.6 (0.02)
Passed bias filter:                      241  (0.0134419); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.48u 0.23s 00:00:00.71 Elapsed: 00:00:00.41
# Mc/sec: 2569.29
//
Query:       KOO25399.1  [L=663]
Description: hypothetical protein Ctob_009697 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (663 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       389  (0.0216967); expected 358.6 (0.02)
Passed bias filter:                      360  (0.0200792); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.54u 0.25s 00:00:00.79 Elapsed: 00:00:00.41
# Mc/sec: 4892.09
//
Query:       KOO25400.1  [L=194]
Description: hly-iii family protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.7e-11   43.2  14.7    5.1e-11   42.7  14.7    1.2  1  HlyIII     Haemolysin-III related
  ------ inclusion threshold ------
      0.075   12.8   0.5      0.075   12.8   0.5    2.1  3  PDR_assoc  Plant PDR ABC transporter associated
        2.4    6.2   6.5        3.3    5.7   6.5    1.2  1  UPF0182    Uncharacterised protein family (UPF0182)


Domain annotation for each model (and alignments):
>> HlyIII  Haemolysin-III related
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.7  14.7   8.6e-15   5.1e-11      44     223 ..      17     170 ..       4     171 .. 0.82

  Alignments for each domain:
  == domain 1  score: 42.7 bits;  conditional E-value: 8.6e-15
      HlyIII  44 vlvfllgallcllcSalyHtlsihseeklrkf..faklDysgIslliagsylplilyalakapkagllylslilalgvlgiisklvplfsrpearplra 140
                 ++++ ++++ +l++Sal+ +   + +  +r +  ++  D++gI lliag+y+p++    +      + +l++++++g+++++ kl++      +  l++
  KOO25400.1  17 IVIYCISLMAMLVFSALFNV---MVKPWVRAIweLQLADHTGILLLIAGTYTPFAARLCY------MRLLAFVWTVGLVSFVAKLSKS--GLDVIALHV 104
                 689*************9877...444345555115678***************9887774......4789****************99..88999**** PP

      HlyIII 141 vlfillgllgvipllhlllvltqlgeaaelalvllvlggvlylvGavfYalrvPErlkpgkfdivghsH.qiFHvfvvlgalfh 223
                  +f+l+g+     l ++++++++++        l+++gg +y++G + +a++        +f      H +i+H+fv+++++++
  KOO25400.1 105 TCFLLMGWAVAPVLPTVMHAFSKAS------AALVLVGGCTYTLGLLPWAMN------RLEF------HnAIWHLFVLAASAMF 170
                 ********87666666555555444......889999************999......4455......426********99865 PP

>> PDR_assoc  Plant PDR ABC transporter associated
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.5   1.3e-05     0.075      29      48 ..      19      38 ..      17      39 .. 0.93
   2 ?   -2.2   0.1      0.61   3.7e+03      35      52 ..      68      85 ..      66      95 .. 0.75
   3 ?   -2.8   0.2      0.95   5.7e+03      37      48 ..     164     175 ..     160     178 .. 0.62

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 1.3e-05
   PDR_assoc 29 wYWigvgallgftiLFNilf 48
                 Y i++ a+l f+ LFN+++
  KOO25400.1 19 IYCISLMAMLVFSALFNVMV 38
                6****************985 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 0.61
   PDR_assoc 35 gallgftiLFNilftlaL 52
                +a l+++ L  ++ t+ L
  KOO25400.1 68 AARLCYMRLLAFVWTVGL 85
                677888888888888876 PP

  == domain 3  score: -2.8 bits;  conditional E-value: 0.95
   PDR_assoc  37 llgftiLFNilf 48 
                 l + +++F+++f
  KOO25400.1 164 LAASAMFFDVIF 175
                 455556666665 PP

>> UPF0182  Uncharacterised protein family (UPF0182)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.7   6.5   0.00055       3.3     217     285 ..      58     126 ..      17     133 .. 0.78

  Alignments for each domain:
  == domain 1  score: 5.7 bits;  conditional E-value: 0.00055
     UPF0182 217 vvtGagYtdvnavlpaktilavialvvavlllvaivlkklklplialallvllaillgvvlpalvqkfi 285
                 +++  +Yt   a+l + ++la++ +v  v +++++ ++ l ++++ +++++l+  ++  vlp+++  f+
  KOO25400.1  58 LLIAGTYTPFAARLCYMRLLAFVWTVGLVSFVAKLSKSGLDVIALHVTCFLLMGWAVAPVLPTVMHAFS 126
                 356678**********************************************************99886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (194 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       723  (0.0403257); expected 358.6 (0.02)
Passed bias filter:                      276  (0.0153941); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.42u 0.25s 00:00:00.67 Elapsed: 00:00:00.42
# Mc/sec: 1400.19
//
Query:       KOO25401.1  [L=257]
Description: mannosyltransferase och1-like protein [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    9.2e-09   35.8   0.0    1.8e-08   34.9   0.0    1.4  1  Gly_transf_sug  Glycosyltransferase sugar-binding region cont
    6.1e-05   22.5   1.1     0.0047   16.3   0.1    2.1  2  TcdA_TcdB       TcdA/TcdB catalytic glycosyltransferase domai


Domain annotation for each model (and alignments):
>> Gly_transf_sug  Glycosyltransferase sugar-binding region containing DXD motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.9   0.0     2e-12   1.8e-08       4      91 ..      14      93 ..      12     100 .. 0.83

  Alignments for each domain:
  == domain 1  score: 34.9 bits;  conditional E-value: 2e-12
  Gly_transf_sug  4 ekkaieslakahpdyqvvvlskelekvrvaildlefllsd.tpwfeeakkllplfialsDllRlaiLykyGGiYlDtDvivlkslrnsi 91
                     +++i s+++ +p+y++ ++s+e           +f+  + +   ++a+ ++   ++++D++R ++L   GG+Y D+D  + ++l  ++
      KOO25401.1 14 NAQYIHSWLDLNPEYEYNFFSDEHA--------WRFVQLHgNAGEKDAYRRILTGSQRADVFRVLYLRIAGGVYADLDEELRRPL-SQL 93
                    5789******************988........45544443443477999999*****************************999.555 PP

>> TcdA_TcdB  TcdA/TcdB catalytic glycosyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.1   5.2e-07    0.0047      17      46 ..      15      44 ..      12      60 .. 0.87
   2 !    5.1   0.1    0.0013        12     201     220 ..      64      83 ..      61      86 .. 0.94

  Alignments for each domain:
  == domain 1  score: 16.3 bits;  conditional E-value: 5.2e-07
                HHHHHHHHHHTTTSEEEEEE-TT-TTHHHH CS
   TcdA_TcdB 17 edYinvwldvnedydinlwvDsnAllaakl 46
                 +Yi+ wld n++y+ n++ D+ A    +l
  KOO25401.1 15 AQYIHSWLDLNPEYEYNFFSDEHAWRFVQL 44
                69*********************9876665 PP

  == domain 2  score: 5.1 bits;  conditional E-value: 0.0013
                 HHHHHHHHHHHH-EEEE-TT CS
   TcdA_TcdB 201 sDivRllvLkelGGlyldvD 220
                 +D+ R+l L+  GG+y d+D
  KOO25401.1  64 ADVFRVLYLRIAGGVYADLD 83 
                 59*****************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (257 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       384  (0.0214178); expected 358.6 (0.02)
Passed bias filter:                      323  (0.0180155); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.44u 0.22s 00:00:00.66 Elapsed: 00:00:00.40
# Mc/sec: 1927.11
//
Query:       KOO25402.1  [L=179]
Description: hypothetical protein Ctob_009700, partial [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (179 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       444  (0.0247643); expected 358.6 (0.02)
Passed bias filter:                      237  (0.0132188); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.24s 00:00:00.62 Elapsed: 00:00:00.38
# Mc/sec: 1410.44
//
Query:       KOO25403.1  [L=299]
Description: hypothetical protein Ctob_003049 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (299 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       704  (0.039266); expected 358.6 (0.02)
Passed bias filter:                      395  (0.0220313); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.46u 0.22s 00:00:00.68 Elapsed: 00:00:00.40
# Mc/sec: 2247.27
//
Query:       KOO25404.1  [L=167]
Description: calmodulin [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.4e-26   90.0  13.2    9.3e-09   34.2   0.4    4.1  5  EF-hand_1     EF hand
    1.5e-25   89.4   3.6    2.7e-16   59.8   0.6    2.1  2  EF-hand_7     EF-hand domain pair
    7.7e-23   78.4   8.0    2.7e-08   33.1   0.2    4.0  3  EF-hand_6     EF-hand domain
    3.5e-21   73.7   8.8    3.4e-07   29.4   0.2    3.6  3  EF-hand_5     EF hand
    7.7e-18   64.1  12.3    9.1e-08   31.8   0.0    4.3  4  EF-hand_8     EF-hand domain pair
    0.00013   22.8   0.0      0.017   16.0   0.0    2.1  2  EF-hand_11    EF-hand domain
    0.00047   20.4   0.1       0.29   11.5   0.0    2.4  2  SPARC_Ca_bdg  Secreted protein acidic and rich in cysteine Ca
     0.0072   16.3   0.7        3.1    7.7   0.1    2.7  3  Caleosin      Caleosin related protein
  ------ inclusion threshold ------
      0.011   15.9   0.2          1    9.5   0.1    2.1  2  p25-alpha     p25-alpha
      0.074   13.0   1.4        1.1    9.3   0.1    2.7  3  EF-hand_4     Cytoskeletal-regulatory complex EF hand
      0.082   13.3   0.2       0.16   12.3   0.1    1.7  1  EF-hand_14    EF-hand domain
       0.15   10.6   0.0        2.6    6.5   0.0    1.9  2  DUF5580       Family of unknown function (DUF5580)


Domain annotation for each model (and alignments):
>> EF-hand_1  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.2   0.4   6.2e-12   9.3e-09       2      28 ..      24      50 ..      23      51 .. 0.92
   2 ?   -2.3   0.0       2.8   4.2e+03      18      27 ..      56      65 ..      54      66 .. 0.73
   3 ?   -2.3   0.0       2.9   4.4e+03      17      28 ..      74      85 ..      70      86 .. 0.77
   4 !   33.1   0.3   1.4e-11   2.1e-08       2      28 ..      98     124 ..      97     125 .. 0.93
   5 !   30.1   0.2   1.3e-10   1.9e-07       2      28 ..     138     164 ..     137     165 .. 0.92

  Alignments for each domain:
  == domain 1  score: 34.2 bits;  conditional E-value: 6.2e-12
                HHHHHHHHTTTSSSEEEHHHHHHHHHH CS
   EF-hand_1  2 lkeiFrefDkDgdGkIdfeEfkellkk 28
                +  +F++fDkD++G+Id++E++e++++
  KOO25404.1 24 FHAAFDKFDKDKSGYIDIQELREVMNE 50
                6789*********************87 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 2.8
                EHHHHHHHHH CS
   EF-hand_1 18 dfeEfkellk 27
                + +E+  +++
  KOO25404.1 56 SDNELSMMMS 65
                6688888886 PP

  == domain 3  score: -2.3 bits;  conditional E-value: 2.9
                EEHHHHHHHHHH CS
   EF-hand_1 17 IdfeEfkellkk 28
                +df  f+ ++ k
  KOO25404.1 74 VDFPAFVGMMGK 85
                788889999965 PP

  == domain 4  score: 33.1 bits;  conditional E-value: 1.4e-11
                 HHHHHHHHTTTSSSEEEHHHHHHHHHH CS
   EF-hand_1   2 lkeiFrefDkDgdGkIdfeEfkellkk 28 
                 lke+F++fD+Dg+G+Id++E+ +++k 
  KOO25404.1  98 LKEAFKVFDRDGSGYIDRDEMHAIFKG 124
                 89*********************9986 PP

  == domain 5  score: 30.1 bits;  conditional E-value: 1.3e-10
                 HHHHHHHHTTTSSSEEEHHHHHHHHHH CS
   EF-hand_1   2 lkeiFrefDkDgdGkIdfeEfkellkk 28 
                 +++i +e+D++gdG I++eEf++l+ k
  KOO25404.1 138 VDKILDEADTNGDGLISYEEFVKLFVK 164
                 79********************99865 PP

>> EF-hand_7  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.8   0.1   2.1e-10   3.1e-07       4      58 ..      24      71 ..      21      83 .. 0.81
   2 !   59.8   0.6   1.8e-19   2.7e-16       4      70 ..      98     162 ..      95     163 .. 0.93

  Alignments for each domain:
  == domain 1  score: 30.8 bits;  conditional E-value: 2.1e-10
   EF-hand_7  4 lkeaFkelDtdgdgyldkeellrllrkifqgagegsklsdeelellfkefDtdkd 58
                 + aF+++D+d++gy+d +el++++       + g++lsd el  ++    +++d
  KOO25404.1 24 FHAAFDKFDKDKSGYIDIQELREVMN------ELGKELSDNELSMMMSAA-KTSD 71
                6789*********************9......********9998888774.3333 PP

  == domain 2  score: 59.8 bits;  conditional E-value: 1.8e-19
   EF-hand_7   4 lkeaFkelDtdgdgyldkeellrllrkifqgagegsklsdeelellfkefDtdkdGvisfdEFlkly 70 
                 lkeaFk +D+dg+gy+d++e++ +++ +++       l++++++++++e Dt++dG is++EF+kl+
  KOO25404.1  98 LKEAFKVFDRDGSGYIDRDEMHAIFKGLDT--NSFRTLTPTQVDKILDEADTNGDGLISYEEFVKLF 162
                 899*******************99999887..78888999************************986 PP

>> EF-hand_6  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.1   0.2   1.8e-11   2.7e-08       2      31 .]      24      52 ..      23      65 .. 0.94
   2 !   30.0   1.2   1.8e-10   2.6e-07       2      27 ..      98     123 ..      98     144 .. 0.95
   3 !   16.7   0.1   3.2e-06    0.0048       4      26 ..     140     162 ..     137     166 .. 0.86

  Alignments for each domain:
  == domain 1  score: 33.1 bits;  conditional E-value: 1.8e-11
   EF-hand_6  2 lreaFklfDkdgdGkidaeElrkalrkalg 31
                +++aF++fDkd++G+id++Elr +++ +lg
  KOO25404.1 24 FHAAFDKFDKDKSGYIDIQELREVMN-ELG 52
                789**********************9.666 PP

  == domain 2  score: 30.0 bits;  conditional E-value: 1.8e-10
   EF-hand_6   2 lreaFklfDkdgdGkidaeElrkalr 27 
                 l+eaFk fD+dg+G+id++E+ ++++
  KOO25404.1  98 LKEAFKVFDRDGSGYIDRDEMHAIFK 123
                 68*********************998 PP

  == domain 3  score: 16.7 bits;  conditional E-value: 3.2e-06
   EF-hand_6   4 eaFklfDkdgdGkidaeElrkal 26 
                 ++ ++ D++gdG i++eE++k++
  KOO25404.1 140 KILDEADTNGDGLISYEEFVKLF 162
                 677889*************9986 PP

>> EF-hand_5  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.4   0.2   2.3e-10   3.4e-07       3      25 .]      26      48 ..      24      48 .. 0.92
   2 !   24.3   0.2     1e-08   1.5e-05       1      22 [.      98     119 ..      98     123 .. 0.89
   3 !   24.0   0.2   1.2e-08   1.8e-05       3      24 ..     140     161 ..     138     163 .. 0.85

  Alignments for each domain:
  == domain 1  score: 29.4 bits;  conditional E-value: 2.3e-10
                HHHHHH-SS-SSCE-HHHHHHHH CS
   EF-hand_5  3 dtFqaiDlNgDGkIskeELktlv 25
                ++F+++D++++G+I+++EL++++
  KOO25404.1 26 AAFDKFDKDKSGYIDIQELREVM 48
                67******************987 PP

  == domain 2  score: 24.3 bits;  conditional E-value: 1e-08
                 HHHHHHHH-SS-SSCE-HHHHH CS
   EF-hand_5   1 lkdtFqaiDlNgDGkIskeELk 22 
                 lk++F+ +D +g+G+I+++E  
  KOO25404.1  98 LKEAFKVFDRDGSGYIDRDEMH 119
                 6889****************85 PP

  == domain 3  score: 24.0 bits;  conditional E-value: 1.2e-08
                 HHHHHH-SS-SSCE-HHHHHHH CS
   EF-hand_5   3 dtFqaiDlNgDGkIskeELktl 24 
                 + ++++D+NgDG Is eE+ +l
  KOO25404.1 140 KILDEADTNGDGLISYEEFVKL 161
                 57899**************773 PP

>> EF-hand_8  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.4   0.3   7.1e-05      0.11      29      53 ..      25      49 ..      22      51 .. 0.87
   2 !   15.0   0.7   1.1e-05     0.016       2      41 ..      36      73 ..      35      86 .. 0.84
   3 !   19.9   0.9   3.3e-07   0.00049      13      52 ..      82     122 ..      70     124 .. 0.74
   4 !   31.8   0.0   6.1e-11   9.1e-08       9      54 ..     129     164 ..     123     165 .. 0.87

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 7.1e-05
   EF-hand_8 29 dilfrefDtdgdGkisfeEFcvlle 53
                ++ f++fD d++G+i+  E  +++ 
  KOO25404.1 25 HAAFDKFDKDKSGYIDIQELREVMN 49
                678*************999988876 PP

  == domain 2  score: 15.0 bits;  conditional E-value: 1.1e-05
   EF-hand_8  2 kgkItreelrrilrilglkkglseeevdilfrefDtdgdG 41
                +g+I+ +elr+ ++ lg++  ls++e+ ++++++ t + G
  KOO25404.1 36 SGYIDIQELREVMNELGKE--LSDNELSMMMSAAKTSDEG 73
                799**********999***..***********99888777 PP

  == domain 3  score: 19.9 bits;  conditional E-value: 3.3e-07
   EF-hand_8  13 ilrilglkk...glseee.vdilfrefDtdgdGkisfeEFcvll 52 
                 ++   g++    g s+e  + + f+ fD+dg+G+i+ +E ++ +
  KOO25404.1  82 MM---GKQVsedGGSDESiLKEAFKVFDRDGSGYIDRDEMHAIF 122
                 44...555566666666678899****************99765 PP

  == domain 4  score: 31.8 bits;  conditional E-value: 6.1e-11
   EF-hand_8   9 elrrilrilglkkglseeevdilfrefDtdgdGkisfeEFcvller 54 
                 ++r+          l++ +vd +++e+Dt+gdG is+eEF+ l+++
  KOO25404.1 129 SFRT----------LTPTQVDKILDEADTNGDGLISYEEFVKLFVK 164
                 5555..........9***************************9986 PP

>> EF-hand_11  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.1   0.0     0.028        41      23      63 ..      25      65 ..      10      89 .. 0.80
   2 !   16.0   0.0   1.1e-05     0.017      22      82 ..      98     162 ..      85     166 .. 0.84

  Alignments for each domain:
  == domain 1  score: 5.1 bits;  conditional E-value: 0.028
                HHHHHHH-TT-SSEE-HHHHHHHHHHHT----HHHHHHHHH CS
  EF-hand_11 23 vqefenfdtlksntvsreefraictrrvqiltdeqfdrlws 63
                   f++fd  ks  +  +e+r + +   + l+d+++  + s
  KOO25404.1 25 HAAFDKFDKDKSGYIDIQELREVMNELGKELSDNELSMMMS 65
                4579********************99999998888776665 PP

  == domain 2  score: 16.0 bits;  conditional E-value: 1.1e-05
                 HHHHHHHH-TT-SSEE-HHHHHHHH....HHHT----HHHHHHHHHTS-B-TTS-EEHHHHHHHH CS
  EF-hand_11  22 ivqefenfdtlksntvsreefraic....trrvqiltdeqfdrlwselpvnakgrlkyqdflskl 82 
                 + + f+ fd   s  + r+e+ ai     t   + lt  q d++ +e   n  g + y++f+  +
  KOO25404.1  98 LKEAFKVFDRDGSGYIDRDEMHAIFkgldTNSFRTLTPTQVDKILDEADTNGDGLISYEEFVKLF 162
                 4456999*************8887633337899****************************8655 PP

>> SPARC_Ca_bdg  Secreted protein acidic and rich in cysteine Ca binding region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.1   0.1    0.0044       6.6      57      83 ..      25      51 ..      14      80 .. 0.85
   2 !   11.5   0.0   0.00019      0.29      58     112 ..     100     160 ..      60     161 .. 0.81

  Alignments for each domain:
  == domain 1  score: 7.1 bits;  conditional E-value: 0.0044
  SPARC_Ca_bdg 57 awkFsklDtnsdkvlsksELaplrapl 83
                  +  F+k+D+++ ++++ +EL+++ ++l
    KOO25404.1 25 HAAFDKFDKDKSGYIDIQELREVMNEL 51
                  567******************998876 PP

  == domain 2  score: 11.5 bits;  conditional E-value: 0.00019
  SPARC_Ca_bdg  58 wkFsklDtnsdkvlsksELaplraplvkle......hCikpflescDadkdkkislkEwce 112
                     F+ +D +  +++++ E++++ + l+++       + +++ l+++D++ d+ is +E+++
    KOO25404.1 100 EAFKVFDRDGSGYIDRDEMHAIFKGLDTNSfrtltpTQVDKILDEADTNGDGLISYEEFVK 160
                   56999999999999999999999999887522222245689*****************975 PP

>> Caleosin  Caleosin related protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.7   0.1    0.0021       3.1      95     121 ..      24      50 ..      17      75 .. 0.67
   2 !    5.9   0.0    0.0072        11       3      40 ..      95     132 ..      93     138 .. 0.84
   3 ?    0.4   0.0      0.36   5.4e+02      91     118 ..     134     161 ..     117     165 .. 0.64

  Alignments for each domain:
  == domain 1  score: 7.7 bits;  conditional E-value: 0.0021
    Caleosin  95 feeifskyakekkdaltlkevlellkg 121
                 f + f+k++k+k++++ ++e+ e++++
  KOO25404.1  24 FHAAFDKFDKDKSGYIDIQELREVMNE 50 
                 666667777776666766666666654 PP

  == domain 2  score: 5.9 bits;  conditional E-value: 0.0072
    Caleosin   3 etvLqqHvaFfDrdkdGiiypldtyrgfralgfnvlls 40 
                 e+ L++ ++ fDrd  G+i   +++  f+ l++n + +
  KOO25404.1  95 ESILKEAFKVFDRDGSGYIDRDEMHAIFKGLDTNSFRT 132
                 6788889999**********999999999999887765 PP

  == domain 3  score: 0.4 bits;  conditional E-value: 0.36
    Caleosin  91 vpqkfeeifskyakekkdaltlkevlel 118
                 +p++ ++i+++ +++ ++ ++++e+++l
  KOO25404.1 134 TPTQVDKILDEADTNGDGLISYEEFVKL 161
                 5666667777777776666666666665 PP

>> p25-alpha  p25-alpha
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.7   0.0     0.021        31      47      74 ..      27      54 ..      21      92 .. 0.76
   2 ?    9.5   0.1    0.0007         1       3      67 ..     101     161 ..      99     166 .. 0.85

  Alignments for each domain:
  == domain 1  score: 4.7 bits;  conditional E-value: 0.021
   p25-alpha 47 iFsKvkaksarkitfeqfkealeelaek 74
                +F K+ + ++  i++++  e+++el ++
  KOO25404.1 27 AFDKFDKDKSGYIDIQELREVMNELGKE 54
                799***9999***************998 PP

  == domain 2  score: 9.5 bits;  conditional E-value: 0.0007
   p25-alpha   3 aFkaFakfgdtkktgkemdnknfsKlckDckiid.kkvtstdvDiiFsKvkaksarkitfeqfkea 67 
                 aFk F + g     +  +d+ ++  ++k  +  + +++t t+vD i     ++++  i++e+f + 
  KOO25404.1 101 AFKVFDRDG-----SGYIDRDEMHAIFKGLDTNSfRTLTPTQVDKILDEADTNGDGLISYEEFVKL 161
                 555555554.....778999999999**9999999****************************984 PP

>> EF-hand_4  Cytoskeletal-regulatory complex EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.3   0.1      0.22   3.3e+02      28      68 ..      41      82 ..      16      90 .. 0.60
   2 ?   -0.7   0.0      0.91   1.4e+03      42      66 ..      95     119 ..      83     126 .. 0.76
   3 ?    9.3   0.1   0.00071       1.1      39      66 ..     132     159 ..     113     164 .. 0.88

  Alignments for each domain:
  == domain 1  score: 1.3 bits;  conditional E-value: 0.22
   EF-hand_4 28 gdkvapvlkn..skleedklekiwdladidedgkldfeefcia 68
                 +++  v+++   +l++++l+ + + a   +d+ +df  f+ +
  KOO25404.1 41 IQELREVMNElgKELSDNELSMMMSAAKT-SDEGVDFPAFVGM 82
                44444444432245667777766665554.4555777777655 PP

  == domain 2  score: -0.7 bits;  conditional E-value: 0.91
   EF-hand_4  42 edklekiwdladidedgkldfeefc 66 
                 e+ l++ +++ d d  g +d +e+ 
  KOO25404.1  95 ESILKEAFKVFDRDGSGYIDRDEMH 119
                 5667888888899999999988865 PP

  == domain 3  score: 9.3 bits;  conditional E-value: 0.00071
   EF-hand_4  39 kleedklekiwdladidedgkldfeefc 66 
                  l+  +++ki d ad + dg + +eef+
  KOO25404.1 132 TLTPTQVDKILDEADTNGDGLISYEEFV 159
                 5778899********************8 PP

>> EF-hand_14  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.1   0.00011      0.16       5      50 ..      27      72 ..      23     116 .. 0.87

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 0.00011
  EF-hand_14  5 lfdlfkdeetdklsvakllkaLaetGirkdDpRLkellkklkkvek 50
                 fd f++++++ + +++l ++++e G + +D  L+ ++++ k  ++
  KOO25404.1 27 AFDKFDKDKSGYIDIQELREVMNELGKELSDNELSMMMSAAKTSDE 72
                59************************************99887766 PP

>> DUF5580  Family of unknown function (DUF5580)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.4   0.0     0.031        46     323     390 ..      22      88 ..      15      94 .. 0.80
   2 ?    6.5   0.0    0.0017       2.6     324     388 ..      97     165 ..      89     167 .] 0.86

  Alignments for each domain:
  == domain 1  score: 2.4 bits;  conditional E-value: 0.031
     DUF5580 323 enLnlsFrkeDrsfsGlLpppkvraiCgkhglyltlslletllnhqdlgyqdeikWqnfvelLsrass 390
                    + +F k D+  sG++  +++r + +  g  l+   l  +++    +  + + +  fv ++ + +s
  KOO25404.1  22 MVFHAAFDKFDKDKSGYIDIQELREVMNELGKELSDNELSMMMS-AAKTSDEGVDFPAFVGMMGKQVS 88 
                 5567899********************99999999999998888.44455666888888887777666 PP

  == domain 2  score: 6.5 bits;  conditional E-value: 0.0017
     DUF5580 324 nLnlsFrkeDrsfsGlLpppkvraiCg....khglyltlslletllnhqdlgyqdeikWqnfvelLsra 388
                  L+ +F+  Dr  sG++ + +++ai +         lt++ ++ +l+  d +  + i +++fv+l  ++
  KOO25404.1  97 ILKEAFKVFDRDGSGYIDRDEMHAIFKgldtNSFRTLTPTQVDKILDEADTNGDGLISYEEFVKLFVKS 165
                 58889********************86222244568*****************************9987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (167 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       792  (0.0441742); expected 358.6 (0.02)
Passed bias filter:                      693  (0.0386525); expected 358.6 (0.02)
Passed Vit filter:                        58  (0.00323498); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.45u 0.29s 00:00:00.74 Elapsed: 00:00:00.41
# Mc/sec: 1225.74
//
Query:       KOO25405.1  [L=136]
Description: hypothetical protein Ctob_003047 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.9e-06   27.3   0.0    6.2e-06   26.3   0.0    1.5  1  DnaJ      DnaJ domain
  ------ inclusion threshold ------
      0.052   13.7   0.2       0.14   12.3   0.1    1.7  2  Zf_RING   KIAA1045 RING finger
       0.19   10.5   0.4       0.25   10.1   0.4    1.1  1  NRDD      Anaerobic ribonucleoside-triphosphate reductase
       0.39   11.2   3.4       0.87   10.1   3.4    1.5  1  CcdA      Post-segregation antitoxin CcdA


Domain annotation for each model (and alignments):
>> DnaJ  DnaJ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.3   0.0   1.4e-09   6.2e-06      15      50 ..      79     119 ..      73     121 .. 0.81

  Alignments for each domain:
  == domain 1  score: 26.3 bits;  conditional E-value: 1.4e-09
                 HHHHHHHHHHHHHHSTTTS.....CCHHHHHHHHHHHHHHH CS
        DnaJ  15 deIkkaYrklalkyHPDkn.....pkdpeaeekFkeineAy 50 
                 + +kkaY++ a+k+HPDk      +++  aee Fk + +Ay
  KOO25405.1  79 KALKKAYHRAAVKLHPDKVqslplASQALAEELFKVLGDAY 119
                 679**************994554444448899*******99 PP

>> Zf_RING  KIAA1045 RING finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.1   3.2e-05      0.14      22      60 ..       5      44 ..       2      55 .. 0.78
   2 ?   -2.3   0.0       1.1   4.9e+03      40      60 ..     115     135 ..     109     136 .] 0.70

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 3.2e-05
     Zf_RING 22 CRvCtkvfHegClrklgylqdesalellkr.AktetGWsC 60
                 Rv ++v+H+   r++++ q++  ++  ++ A  + GW+ 
  KOO25405.1  5 ARVGQRVHHQRIAREVNEKQQQRRQKKKEEaAAHTNGWAH 44
                69**************999887777666551556679*85 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 1.1
     Zf_RING  40 lqdesalellkrAktetGWsC 60 
                 l d  a+el     t+ G sC
  KOO25405.1 115 LGDAYAKELRALEGTSGGVSC 135
                 556667777777778888888 PP

>> NRDD  Anaerobic ribonucleoside-triphosphate reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.4   5.5e-05      0.25      13      50 ..      12      49 ..       6      56 .. 0.88

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 5.5e-05
                HHHHHHHHHHHHH-H..HHHHHHHHHHHTTSEEETTGG CS
        NRDD 13 lrlklasevskeyalkkllpkevaeaheegdiHiHDld 50
                 ++++a ev+++  +++  +ke a ah +g+ H H   
  KOO25405.1 12 HHQRIAREVNEKQQQRRQKKKEEAAAHTNGWAHAHASI 49
                67899******************************874 PP

>> CcdA  Post-segregation antitoxin CcdA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   3.4   0.00019      0.87      29      63 ..      14      48 ..      10      53 .. 0.89

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.00019
        CcdA 29 eaLaeevkeekaerwkeenreaieelNrfveehGl 63
                + +a+ev+e++++r++++++ea ++ N +  +h +
  KOO25405.1 14 QRIAREVNEKQQQRRQKKKEEAAAHTNGWAHAHAS 48
                789**************************999976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (136 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1476  (0.0823247); expected 358.6 (0.02)
Passed bias filter:                      737  (0.0411066); expected 358.6 (0.02)
Passed Vit filter:                        48  (0.00267723); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.43u 0.28s 00:00:00.71 Elapsed: 00:00:00.42
# Mc/sec: 976.19
//
Query:       KOO25406.1  [L=340]
Description: eukaryotic translation initiation factor 2 beta subunit [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    9.4e-37  125.5   0.0    1.5e-36  124.8   0.0    1.3  1  eIF-5_eIF-2B     Domain found in IF2B/IF5
  ------ inclusion threshold ------
      0.013   15.9   0.1       0.05   14.0   0.1    2.2  1  Lar_restr_allev  Restriction alleviation protein Lar
      0.082   12.3   1.7        3.8    7.1   0.1    2.5  2  zf-ribbon_3      zinc-ribbon domain
       0.11   12.3   0.8        8.7    6.2   0.1    2.6  2  zf-HYPF          HypF finger
       0.25   11.3   1.4       0.45   10.4   0.1    2.1  2  DUF35_N          Rubredoxin-like zinc ribbon domain (DUF35_N)
        5.4    7.4   5.7        2.5    8.5   0.3    2.4  2  Arc_trans_TRASH  Archaeal TRASH domain
        5.5    4.9   5.1        7.3    4.5   5.1    1.1  1  Totivirus_coat   Totivirus coat protein


Domain annotation for each model (and alignments):
>> eIF-5_eIF-2B  Domain found in IF2B/IF5
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  124.8   0.0   5.8e-40   1.5e-36       7     117 .]     206     316 ..     201     316 .. 0.97

  Alignments for each domain:
  == domain 1  score: 124.8 bits;  conditional E-value: 5.8e-40
                   SSS--SSTT--EEEETT.EEEETTHHHHHHHHTTSHHHHHHHHHHHHTSEEEESETTEEEESSSSSCCHHHHHHHHHHHHHTSTSSSTSTCEEECCS CS
  eIF-5_eIF-2B   7 kkerykmpklqvkvegkkktvivNfeeiakaLnrdpehvlkyllkelgtqgsidengrlilngkfeakkleklldkyieeyVlCkeCkspeteleke 103
                   +++r+ ++++qv +eg+k++v++Nf ei+++Lnr+ +hv++++l+e+gt+gsid+++r++++g+f  k +e+++++y+ eyV C++Cksp t l+k+
    KOO25406.1 206 DRKRFLIKPPQVVREGSKRVVLTNFGEICETLNRSMDHVYSFMLAEMGTTGSIDASSRMVIKGRFPPKAIEQIIRRYVGEYVSCSSCKSPATALQKQ 302
                   467********************************************************************************************** PP

                   SSCEEEEESSSTCE CS
  eIF-5_eIF-2B 104 erllvlkCkaCgak 117
                   +rl++++C++Cga+
    KOO25406.1 303 NRLYFMQCNNCGAR 316
                   ************85 PP

>> Lar_restr_allev  Restriction alleviation protein Lar
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.1   1.9e-05      0.05       5      54 ..     288     339 ..     275     340 .] 0.83

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 1.9e-05
  Lar_restr_allev   5 pCPfCggravlersqrvvaeigqcvyCadCga......stpwfkiaedeaeaekea 54 
                       C  C+++a+  + q++ +    +++C +Cga       ++ f  +++ a+++++a
       KOO25406.1 288 SCSSCKSPATALQKQNRLY----FMQCNNCGArrsvtpIKTGFVAISRGARKKNRA 339
                      6999**********99999....9********887777666676676666666665 PP

>> zf-ribbon_3  zinc-ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.1   0.1    0.0015       3.8       2      14 ..     286     298 ..     285     301 .. 0.81
   2 ?    4.2   0.1     0.012        31       4      10 ..     309     315 ..     308     320 .. 0.84

  Alignments for each domain:
  == domain 1  score: 7.1 bits;  conditional E-value: 0.0015
  zf-ribbon_3   2 tvrCPnCGaplss 14 
                  +v+C++C++p+++
   KOO25406.1 286 YVSCSSCKSPATA 298
                  699******9765 PP

  == domain 2  score: 4.2 bits;  conditional E-value: 0.012
  zf-ribbon_3   4 rCPnCGa 10 
                  +C+nCGa
   KOO25406.1 309 QCNNCGA 315
                  5999997 PP

>> zf-HYPF  HypF finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.9   0.0     0.017        45      15      27 ..     280     292 ..     276     298 .. 0.89
   2 ?    6.2   0.1    0.0034       8.7      14      30 ..     303     316 ..     299     320 .. 0.63

  Alignments for each domain:
  == domain 1  score: 3.9 bits;  conditional E-value: 0.017
                 TTTT-TT---TTT CS
     zf-HYPF  15 RRfhaqfisCtnC 27 
                 RR+  + +sC +C
  KOO25406.1 280 RRYVGEYVSCSSC 292
                 9************ PP

  == domain 2  score: 6.2 bits;  conditional E-value: 0.0034
                 STTTT-TT---TTTS-- CS
     zf-HYPF  14 dRRfhaqfisCtnCGPr 30 
                 +R ++ q   C+nCG r
  KOO25406.1 303 NRLYFMQ---CNNCGAR 316
                 5666555...7777766 PP

>> DUF35_N  Rubredoxin-like zinc ribbon domain (DUF35_N)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.2       1.3   3.5e+03      27      34 ..     288     295 ..     287     300 .. 0.70
   2 ?   10.4   0.1   0.00017      0.45       5      20 ..     301     316 ..     297     317 .. 0.89

  Alignments for each domain:
  == domain 1  score: -2.0 bits;  conditional E-value: 1.3
     DUF35_N  27 vCphCgsd 34 
                 +C+ C s 
  KOO25406.1 288 SCSSCKSP 295
                 57777665 PP

  == domain 2  score: 10.4 bits;  conditional E-value: 0.00017
     DUF35_N   5 aegrLvgqrCpdCGtv 20 
                 +++rL +++C +CG+ 
  KOO25406.1 301 KQNRLYFMQCNNCGAR 316
                 789***********86 PP

>> Arc_trans_TRASH  Archaeal TRASH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.0   0.8      0.22   5.7e+02      23      31 ..     286     294 ..     280     297 .. 0.89
   2 ?    8.5   0.3   0.00097       2.5      15      29 ..     299     313 ..     294     316 .. 0.86

  Alignments for each domain:
  == domain 1  score: 1.0 bits;  conditional E-value: 0.22
  Arc_trans_TRASH  23 yvCCktCks 31 
                      yv C++Cks
       KOO25406.1 286 YVSCSSCKS 294
                      899****97 PP

  == domain 2  score: 8.5 bits;  conditional E-value: 0.00097
  Arc_trans_TRASH  15 yklknkvYyvCCktC 29 
                      ++ +n+ Y++ C++C
       KOO25406.1 299 LQKQNRLYFMQCNNC 313
                      5679*********** PP

>> Totivirus_coat  Totivirus coat protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.5   5.1    0.0029       7.3     698     756 ..      69     127 ..      36     131 .. 0.79

  Alignments for each domain:
  == domain 1  score: 4.5 bits;  conditional E-value: 0.0029
  Totivirus_coat 698 qlpraggasdGgggvppppalgaaagdapsppssgsslaasaeapaepeppaaeqaera 756
                     + p+ g+  +G g  ppppa++aaa+d+    s   s++++++++++  ++aa+++++a
      KOO25406.1  69 KKPKDGEEEGGDGPTPPPPAPSAAAADDDDDESLDFSKIPKKKKKPKEDEAAAAAPAPA 127
                     45677788899999************999777777777777776666666666665555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (340 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1059  (0.0590663); expected 358.6 (0.02)
Passed bias filter:                      519  (0.0289475); expected 358.6 (0.02)
Passed Vit filter:                        72  (0.00401584); expected 17.9 (0.001)
Passed Fwd filter:                        20  (0.00111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.63u 0.27s 00:00:00.90 Elapsed: 00:00:00.45
# Mc/sec: 2291.32
//
Query:       KOO25407.1  [L=361]
Description: hypothetical protein Ctob_003054, partial [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (361 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       406  (0.0226449); expected 358.6 (0.02)
Passed bias filter:                      358  (0.0199677); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.47u 0.27s 00:00:00.74 Elapsed: 00:00:00.43
# Mc/sec: 2499.98
//
Query:       KOO25408.1  [L=3365]
Description: u-box domain-containing protein 4 [Chrysochromulina sp. CCMP291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
     2e-225  723.1 190.2    7.7e-09   35.3   0.8   64.7 66  Arm              Armadillo/beta-catenin-like repeat
    1.3e-24   86.1  35.2     0.0014   18.6   0.4   17.6 19  Atx10homo_assoc  Spinocerebellar ataxia type 10 protein domai
    3.2e-21   75.9   4.9      0.001   18.5   0.0   14.0 12  V-ATPase_H_N     V-ATPase subunit H
    3.4e-18   66.0  30.1       0.27   10.6   0.1   17.4 18  Arm_2            Armadillo-like
      2e-13   50.1   1.5        5.3    5.9   0.0   11.7 11  RICTOR_N         Rapamycin-insensitive companion of mTOR, N-t
    7.4e-12   45.6  19.2        1.9    8.5   0.0   13.7 15  Cnd1             non-SMC mitotic condensation complex subunit
    7.2e-11   42.0  48.0     0.0037   16.7   0.0   12.7 15  DUF5578          Family of unknown function (DUF5578)
    4.8e-08   32.0  24.0       0.23   10.0   0.8    9.6 11  Adaptin_N        Adaptin N terminal region
      5e-08   31.9   4.2    0.00056   19.3   0.1    3.2  3  EF-hand_1        EF hand
    7.1e-08   32.2   0.2    5.2e-07   29.4   0.2    2.4  2  EF-hand_8        EF-hand domain pair
    7.5e-08   32.7 178.2      0.026   14.9   1.2   25.6 25  HEAT_2           HEAT repeats
    1.6e-07   30.7   3.4    0.00061   19.5   0.1    3.2  2  EF-hand_6        EF-hand domain
    9.8e-07   28.9  15.1       0.67   10.1   0.0   10.0 13  V-ATPase_H_C     V-ATPase subunit H
    1.3e-06   27.8   1.6        1.1    8.4   0.2    6.5  8  DUF4704          Domain of unknown function (DUF4704)
      1e-05   25.9   3.1    5.7e-05   23.5   2.1    2.6  2  EF-hand_7        EF-hand domain pair
    0.00082   19.4  59.3       0.75   10.2   0.1   20.8 18  HEAT             HEAT repeat
     0.0019   17.6   7.9      0.029   13.9   0.3    3.6  4  EF-hand_5        EF hand
     0.0098   15.5   8.2        4.2    6.9   0.0    6.5  6  CLASP_N          CLASP N terminal
  ------ inclusion threshold ------
      0.035   13.7   1.5         34    4.0   0.1    5.9  6  MtrA             Tetrahydromethanopterin S-methyltransferase,
      0.051   11.7   0.0         29    2.6   0.0    4.7  5  KAP              Kinesin-associated protein (KAP)


Domain annotation for each model (and alignments):
>> Arm  Armadillo/beta-catenin-like repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.4   0.8   2.1e-07   0.00019       8      40 ..      79     111 ..      75     112 .. 0.91
   2 !   21.6   0.1   1.7e-07   0.00015       4      37 ..     117     150 ..     114     153 .. 0.90
   3 !   13.6   0.3     6e-05     0.054       6      40 ..     160     194 ..     155     195 .. 0.89
   4 !   17.2   0.2   4.2e-06    0.0038       5      41 .]     201     235 ..     197     235 .. 0.88
   5 !   20.5   0.2   3.9e-07   0.00035       3      41 .]     239     277 ..     236     277 .. 0.88
   6 ?    5.6   0.0      0.02        18       1      23 [.     279     301 ..     279     308 .. 0.88
   7 ?    4.4   0.0     0.045        40       1      24 [.     321     346 ..     321     357 .. 0.85
   8 !   12.3   0.0   0.00015      0.14       3      37 ..     367     402 ..     367     406 .. 0.93
   9 ?    5.3   0.4     0.023        21      16      36 ..     422     442 ..     422     445 .. 0.94
  10 ?    5.7   0.1     0.019        17      15      39 ..     458     482 ..     455     483 .. 0.92
  11 ?    1.1   0.0      0.49   4.4e+02      15      37 ..     500     522 ..     491     523 .. 0.86
  12 !   28.7   0.0     1e-09   9.1e-07       2      41 .]     527     566 ..     526     566 .. 0.95
  13 !    6.7   0.0    0.0089         8       1      23 [.     568     591 ..     568     593 .. 0.88
  14 ?    2.4   0.0       0.2   1.8e+02      28      41 .]     765     778 ..     761     778 .. 0.88
  15 !   18.8   0.1   1.3e-06    0.0012       6      36 ..     826     857 ..     821     862 .. 0.92
  16 !    8.8   0.0    0.0019       1.7       3      40 ..     865     902 ..     863     903 .. 0.89
  17 !   19.1   0.0   1.1e-06     0.001      12      41 .]     910     939 ..     907     939 .. 0.94
  18 !   18.5   0.0   1.7e-06    0.0015       2      41 .]     942     981 ..     941     981 .. 0.95
  19 ?    2.4   0.0       0.2   1.8e+02       3      26 ..     985    1008 ..     982    1016 .. 0.77
  20 !   28.6   0.1   1.1e-09   9.8e-07       3      41 .]    1036    1074 ..    1033    1074 .. 0.94
  21 !   10.7   0.0   0.00047      0.42       2      40 ..    1077    1115 ..    1076    1116 .. 0.93
  22 !   12.2   0.0   0.00017      0.15       2      36 ..    1119    1157 ..    1118    1158 .. 0.83
  23 ?   -0.2   0.0       1.3   1.1e+03       3      18 ..    1203    1218 ..    1201    1219 .. 0.77
  24 !   22.5   0.1   9.1e-08   8.2e-05       5      41 .]    1258    1295 ..    1254    1295 .. 0.90
  25 !   11.0   0.0    0.0004      0.36       3      24 ..    1298    1319 ..    1297    1324 .. 0.87
  26 ?    4.5   0.0     0.041        37       1      29 [.    1346    1374 ..    1346    1385 .. 0.73
  27 ?    6.0   0.0     0.014        13       2      40 ..    1388    1426 ..    1388    1427 .. 0.95
  28 ?   -1.8   0.0       4.2   3.8e+03      12      25 ..    1460    1473 ..    1459    1475 .. 0.87
  29 !   22.0   0.1   1.3e-07   0.00012       2      41 .]    1519    1558 ..    1518    1558 .. 0.95
  30 !   15.2   0.0   1.9e-05     0.017       8      36 ..    1566    1594 ..    1561    1594 .. 0.90
  31 !   18.8   0.3   1.4e-06    0.0012       7      40 ..    1703    1736 ..    1697    1737 .. 0.92
  32 ?    5.8   0.0     0.017        15       4      26 ..    1741    1763 ..    1739    1777 .. 0.74
  33 !   30.9   0.1   2.1e-10   1.9e-07       4      40 ..    1820    1856 ..    1817    1857 .. 0.91
  34 ?   -1.7   0.1       3.9   3.5e+03      17      33 ..    1870    1886 ..    1859    1893 .. 0.74
  35 !    9.3   0.2    0.0013       1.2       2      40 ..    1896    1937 ..    1895    1938 .. 0.92
  36 !   10.9   0.0   0.00042      0.38       6      41 .]    1944    1979 ..    1940    1979 .. 0.91
  37 !   20.8   0.1   3.1e-07   0.00028       3      41 .]    1983    2022 ..    1981    2022 .. 0.94
  38 !   16.0   0.4     1e-05    0.0091       6      40 ..    2029    2063 ..    2024    2064 .. 0.90
  39 ?    1.5   0.0      0.37   3.3e+02       3      40 ..    2068    2106 ..    2066    2107 .. 0.86
  40 !    7.6   0.0    0.0047       4.2       1      23 [.    2109    2132 ..    2109    2136 .. 0.89
  41 ?    1.5   0.1      0.38   3.4e+02      29      41 .]    2163    2175 ..    2160    2175 .. 0.89
  42 !   13.5   0.4   6.1e-05     0.055       3      37 ..    2179    2213 ..    2177    2216 .. 0.92
  43 ?    4.8   0.0     0.035        31      18      41 .]    2231    2254 ..    2228    2254 .. 0.93
  44 !    9.0   0.0    0.0016       1.5       4      25 ..    2259    2282 ..    2256    2285 .. 0.86
  45 !   25.0   0.0   1.5e-08   1.4e-05       2      40 ..    2318    2356 ..    2317    2357 .. 0.92
  46 !   11.9   0.0    0.0002      0.18       1      22 [.    2358    2379 ..    2358    2385 .. 0.89
  47 ?   -1.1   0.4       2.6   2.3e+03      29      39 ..    2409    2419 ..    2405    2421 .. 0.83
  48 !   21.5   0.3   1.9e-07   0.00017       3      38 ..    2424    2459 ..    2423    2461 .. 0.94
  49 ?    1.6   0.0      0.34   3.1e+02      18      40 ..    2476    2498 ..    2471    2499 .. 0.93
  50 !   16.9   0.0   5.3e-06    0.0048       1      27 [.    2500    2526 ..    2500    2539 .. 0.85
  51 !    7.9   0.1    0.0036       3.2      17      40 ..    2553    2576 ..    2549    2577 .. 0.90
  52 ?   -1.4   0.0       3.1   2.8e+03      16      35 ..    2596    2619 ..    2596    2621 .. 0.87
  53 !    7.7   0.1    0.0042       3.7       4      39 ..    2628    2665 ..    2625    2666 .. 0.85
  54 !    8.1   0.2    0.0032       2.8      10      41 .]    2677    2708 ..    2670    2708 .. 0.90
  55 ?    5.6   0.2     0.019        17       7      40 ..    2715    2748 ..    2712    2749 .. 0.93
  56 ?    3.4   0.0     0.099        88       5      28 ..    2755    2778 ..    2750    2781 .. 0.73
  57 !    7.8   0.0    0.0039       3.5       4      34 ..    2825    2857 ..    2822    2861 .. 0.65
  58 !   26.5   0.3     5e-09   4.5e-06       1      41 []    2862    2902 ..    2862    2902 .. 0.96
  59 !   35.3   0.8   8.5e-12   7.7e-09       2      41 .]    2905    2944 ..    2904    2944 .. 0.96
  60 ?    2.0   0.7      0.27   2.4e+02      13      41 .]    2953    2981 ..    2951    2981 .. 0.94
  61 !    8.4   0.0    0.0025       2.2       1      22 [.    2983    3004 ..    2983    3027 .. 0.84
  62 !   25.1   0.1   1.4e-08   1.3e-05       3      41 .]    3030    3068 ..    3030    3068 .. 0.96
  63 !   16.4   0.0   7.5e-06    0.0067       4      41 .]    3072    3115 ..    3072    3115 .. 0.90
  64 !   21.9   0.0   1.5e-07   0.00013       2      40 ..    3117    3155 ..    3116    3156 .. 0.93
  65 !   19.8   0.0   6.3e-07   0.00057       4      40 ..    3161    3197 ..    3159    3198 .. 0.96
  66 !   12.8   0.0    0.0001     0.093       7      29 ..    3207    3229 ..    3205    3241 .. 0.83

  Alignments for each domain:
  == domain 1  score: 21.4 bits;  conditional E-value: 2.1e-07
                 HHHTTHHHHHHHHTTTSSHHHHHHHHHHHHHHT CS
         Arm   8 vieaGavppLvrLLssedeevqeeAawALsNLa 40 
                 + +aGa++pLvrLLs++  ++q+ Aa+AL+ +a
  KOO25408.1  79 LSRAGAIEPLVRLLSCGAANTQCSAASALAGIA 111
                 668**************************9876 PP

  == domain 2  score: 21.6 bits;  conditional E-value: 1.7e-07
                 HHHHHHHTTHHHHHHHHTTTSSHHHHHHHHHHHH CS
         Arm   4 nkdavieaGavppLvrLLssedeevqeeAawALs 37 
                   ++++ aG+ p+Lv+LL++++ +vqeeAa+AL+
  KOO25408.1 117 YQKQIVAAGGGPALVALLKTGSAKVQEEAAAALA 150
                 5678999*************************97 PP

  == domain 3  score: 13.6 bits;  conditional E-value: 6e-05
                 HHHHHTTHHHHHHHHTTTSSHHHHHHHHHHHHHHT CS
         Arm   6 davieaGavppLvrLLssedeevqeeAawALsNLa 40 
                  ++ +aGa+p+Lv LLs+++   q +Aa A +N a
  KOO25408.1 160 SEILRAGAIPALVGLLSNGSAIAQAAAAQATANAA 194
                 6899******************9999999988866 PP

  == domain 4  score: 17.2 bits;  conditional E-value: 4.2e-06
                 HHHHHHTTHHHHHHHHTTTSSHHHHHHHHHHHHHHTT CS
         Arm   5 kdavieaGavppLvrLLssedeevqeeAawALsNLaa 41 
                  +++ +aGa+p L++LL s++   q++Aa AL+NLaa
  KOO25408.1 201 QREIAKAGAIPLLLTLLGSGK--AQKPAAVALGNLAA 235
                 67899*************776..59**********96 PP

  == domain 5  score: 20.5 bits;  conditional E-value: 3.9e-07
                 HHHHHHHHTTHHHHHHHHTTTSSHHHHHHHHHHHHHHTT CS
         Arm   3 enkdavieaGavppLvrLLssedeevqeeAawALsNLaa 41 
                 e  d v  +G+v pL++LL+ +d+e q eAa+AL+ +a+
  KOO25408.1 239 EIQDIVAGLGGVAPLLALLNGMDVESQVEAAAALAEMAR 277
                 45667779**************************99886 PP

  == domain 6  score: 5.6 bits;  conditional E-value: 0.02
                 SHHHHHHHHHTTHHHHHHHHTTT CS
         Arm   1 nsenkdavieaGavppLvrLLss 23 
                 n+e   a+ ++G++ pL+++L s
  KOO25408.1 279 NPETQSAIAKSGGIGPLLAMLGS 301
                 678889***************87 PP

  == domain 7  score: 4.4 bits;  conditional E-value: 0.045
                 SHHHHHHHHHTTHHHHHHHHTT..TS CS
         Arm   1 nsenkdavieaGavppLvrLLs..se 24 
                 n en d + ++ ++ pL+rLL+   +
  KOO25408.1 321 NKENQDSIARMDGLTPLCRLLDagED 346
                 6799*****************96443 PP

  == domain 8  score: 12.3 bits;  conditional E-value: 0.00015
                 HHHHHHHHTTHHHHHHHHTT.TSSHHHHHHHHHHHH CS
         Arm   3 enkdavieaGavppLvrLLs.sedeevqeeAawALs 37 
                 en + v+++G++  L  L++ s +++v+ e+a+A +
  KOO25408.1 367 ENQRFVVDLGGISYLAGLIKlSSNTRVKAEVAGAFW 402
                 68999*****************************98 PP

  == domain 9  score: 5.3 bits;  conditional E-value: 0.023
                 HHHHHTTTSSHHHHHHHHHHH CS
         Arm  16 pLvrLLssedeevqeeAawAL 36 
                 pLv+LL  +d + +e Aa+A+
  KOO25408.1 422 PLVQLLAVDDARATEHAACAI 442
                 8*******************8 PP

  == domain 10  score: 5.7 bits;  conditional E-value: 0.019
                 HHHHHHTTTSSHHHHHHHHHHHHHH CS
         Arm  15 ppLvrLLssedeevqeeAawALsNL 39 
                 + L++LL++++e +q  A+ AL+ L
  KOO25408.1 458 QMLIELLTNGSEATQDRATKALWGL 482
                 57********************966 PP

  == domain 11  score: 1.1 bits;  conditional E-value: 0.49
                 HHHHHHTTTSSHHHHHHHHHHHH CS
         Arm  15 ppLvrLLssedeevqeeAawALs 37 
                  +Lv+LL+ +  +v+  A+w Ls
  KOO25408.1 500 AALVELLKRDYADVKDYALWSLS 522
                 68******************997 PP

  == domain 12  score: 28.7 bits;  conditional E-value: 1e-09
                 HHHHHHHHHTTHHHHHHHHTTTSSHHHHHHHHHHHHHHTT CS
         Arm   2 senkdavieaGavppLvrLLssedeevqeeAawALsNLaa 41 
                  en ++v e+G++ pL+++L ++ +++q++Aa+A++ La+
  KOO25408.1 527 RENQMTVAESGGISPLIACLGDMRPKIQKQAAAAIAKLAR 566
                 699********************************99986 PP

  == domain 13  score: 6.7 bits;  conditional E-value: 0.0089
                 SHHHHHHHHHTTHHHHHHHHTT.T CS
         Arm   1 nsenkdavieaGavppLvrLLs.s 23 
                 n++ + ++ ++G+v+p ++LL+ s
  KOO25408.1 568 NDDTRSQIAKLGGVKPIIKLLQpS 591
                 678899***************955 PP

  == domain 14  score: 2.4 bits;  conditional E-value: 0.2
                 HHHHHHHHHHHHTT CS
         Arm  28 vqeeAawALsNLaa 41 
                 v e+A+ AL+NLaa
  KOO25408.1 765 VHEDATDALANLAA 778
                 789*********96 PP

  == domain 15  score: 18.8 bits;  conditional E-value: 1.3e-06
                 HHHHHTTHHHHHHHHTT.TSSHHHHHHHHHHH CS
         Arm   6 davieaGavppLvrLLs.sedeevqeeAawAL 36 
                  a+ +aGa+ pLv+LL+ +e +e qe+Aa+A+
  KOO25408.1 826 SAIAKAGAIGPLVSLLDgNEGPEAQEAAAGAI 857
                 6899***************************8 PP

  == domain 16  score: 8.8 bits;  conditional E-value: 0.0019
                 HHHHHHHHTTHHHHHHHHTTTSSHHHHHHHHHHHHHHT CS
         Arm   3 enkdavieaGavppLvrLLssedeevqeeAawALsNLa 40 
                  n+ ++ e+G++  Lv LL +++++ +e A +AL  L+
  KOO25408.1 865 ANRHMITESGGIGFLVMLLGCTNPKSREHAEGALVRLS 902
                 6999***********************99988887665 PP

  == domain 17  score: 19.1 bits;  conditional E-value: 1.1e-06
                 THHHHHHHHTTTSSHHHHHHHHHHHHHHTT CS
         Arm  12 GavppLvrLLssedeevqeeAawALsNLaa 41 
                  +++ Lv++L+++  + qe+Aa+AL+NLa+
  KOO25408.1 910 QIIKKLVHMLQDPGAGGQEQAAAALANLAR 939
                 5899************************97 PP

  == domain 18  score: 18.5 bits;  conditional E-value: 1.7e-06
                 HHHHHHHHHTTHHHHHHHHTTTSSHHHHHHHHHHHHHHTT CS
         Arm   2 senkdavieaGavppLvrLLssedeevqeeAawALsNLaa 41 
                 + n++ +++a+++ pL++ L+  + + +e+A+ ++  L++
  KOO25408.1 942 ENNRQSIVDANGITPLLEILDASSAKAKENAVDTIKELCR 981
                 569***********************************97 PP

  == domain 19  score: 2.4 bits;  conditional E-value: 0.2
                  HHHHHHHHTTHHHHHHHHTTTSSH CS
         Arm    3 enkdavieaGavppLvrLLssede 26  
                   n  +v +aG++  Lv  L+  ++
  KOO25408.1  985 NNQAQVARAGGIAKLVGVLQGFSV 1008
                  48899***********99994444 PP

  == domain 20  score: 28.6 bits;  conditional E-value: 1.1e-09
                  HHHHHHHHTTHHHHHHHHTTTSSHHHHHHHHHHHHHHTT CS
         Arm    3 enkdavieaGavppLvrLLssedeevqeeAawALsNLaa 41  
                   n da+ eaGa+ pLv++L  +++ +q +Aa+AL+NLa+
  KOO25408.1 1036 MNQDAITEAGAIGPLVSMLIAPSPVMQANAAGALANLAR 1074
                  599**********************************97 PP

  == domain 21  score: 10.7 bits;  conditional E-value: 0.00047
                  HHHHHHHHHTTHHHHHHHHTTTSSHHHHHHHHHHHHHHT CS
         Arm    2 senkdavieaGavppLvrLLssedeevqeeAawALsNLa 40  
                  ++n  a+ + Gav pL+ L++ ++++++ e+a A++ La
  KOO25408.1 1077 PDNQGAITKTGAVAPLCVLMKEGSDDTKDESAFAIWSLA 1115
                  789999*************************99999987 PP

  == domain 22  score: 12.2 bits;  conditional E-value: 0.00017
                  HHHHHHHHHTTHHHHHHHHTT....TSSHHHHHHHHHHH CS
         Arm    2 senkdavieaGavppLvrLLs....sedeevqeeAawAL 36  
                  ++nkd++ ++G+++pL++LL       ++e +  A++AL
  KOO25408.1 1119 QGNKDTIAKLGGIDPLLSLLVtgwtERSVECVAGALTAL 1157
                  68******************9877777777777777776 PP

  == domain 23  score: -0.2 bits;  conditional E-value: 1.3
                  HHHHHHHHTTHHHHHH CS
         Arm    3 enkdavieaGavppLv 18  
                   n  +  ++G++ppL+
  KOO25408.1 1203 ANQVTFAKLGGIPPLI 1218
                  566666799******8 PP

  == domain 24  score: 22.5 bits;  conditional E-value: 9.1e-08
                  HHHHH.HTTHHHHHHHHTTTSSHHHHHHHHHHHHHHTT CS
         Arm    5 kdavi.eaGavppLvrLLssedeevqeeAawALsNLaa 41  
                  ++a+i ++ ++ppL+ L +  + e q+ Aa+AL++La+
  KOO25408.1 1258 TQALIaKSDGIPPLIGLVKKSSAEAQQHAACALWHLAS 1295
                  566666******************************96 PP

  == domain 25  score: 11.0 bits;  conditional E-value: 0.0004
                  HHHHHHHHTTHHHHHHHHTTTS CS
         Arm    3 enkdavieaGavppLvrLLsse 24  
                  en+ a++ea +++pL+++L+ +
  KOO25408.1 1298 ENRAAIVEAQGIKPLISMLTAD 1319
                  8******************943 PP

  == domain 26  score: 4.5 bits;  conditional E-value: 0.041
                  SHHHHHHHHHTTHHHHHHHHTTTSSHHHH CS
         Arm    1 nsenkdavieaGavppLvrLLssedeevq 29  
                  nse   ++ e G+v pLv+LLs + ++  
  KOO25408.1 1346 NSEVSAEIAEKGGVLPLVKLLSKGTPGAE 1374
                  567778999************96655554 PP

  == domain 27  score: 6.0 bits;  conditional E-value: 0.014
                  HHHHHHHHHTTHHHHHHHHTTTSSHHHHHHHHHHHHHHT CS
         Arm    2 senkdavieaGavppLvrLLssedeevqeeAawALsNLa 40  
                  s+n+d + +aG+++   +LLss+ +++ e+Aa+ L++La
  KOO25408.1 1388 SRNRDKIANAGCIESATKLLSSTTVGTPEVAARLLAHLA 1426
                  579*********************************998 PP

  == domain 28  score: -1.8 bits;  conditional E-value: 4.2
                  THHHHHHHHTTTSS CS
         Arm   12 GavppLvrLLssed 25  
                  Ga++ L+++L++++
  KOO25408.1 1460 GAIKKLIAMLNNTH 1473
                  9*********9865 PP

  == domain 29  score: 22.0 bits;  conditional E-value: 1.3e-07
                  HHHHHHHHHTTHHHHHHHHTTTSSHHHHHHHHHHHHHHTT CS
         Arm    2 senkdavieaGavppLvrLLssedeevqeeAawALsNLaa 41  
                   +  da+i+a av pL+++++++++  qe Aa+A+++Laa
  KOO25408.1 1519 HDMQDAIIHADAVAPLLTCIRTGSQLGQEHAARAIWHLAA 1558
                  5789**********************************96 PP

  == domain 30  score: 15.2 bits;  conditional E-value: 1.9e-05
                  HHHTTHHHHHHHHTTTSSHHHHHHHHHHH CS
         Arm    8 vieaGavppLvrLLssedeevqeeAawAL 36  
                  ++  Ga+p Lv+LL++++++ qe Aa+ L
  KOO25408.1 1566 LVAKGAIPELVQLLKTGSPRAQEMAAAGL 1594
                  6777**********************876 PP

  == domain 31  score: 18.8 bits;  conditional E-value: 1.4e-06
                  HHHHTTHHHHHHHHTTTSSHHHHHHHHHHHHHHT CS
         Arm    7 avieaGavppLvrLLssedeevqeeAawALsNLa 40  
                  ++ +aG+v pL++ L+++  + +e+Aa+AL++La
  KOO25408.1 1703 LIADAGGVLPLLNQLTNGTMQARENAAGALWHLA 1736
                  577******************************8 PP

  == domain 32  score: 5.8 bits;  conditional E-value: 0.017
                  HHHHHHHTTHHHHHHHHTTTSSH CS
         Arm    4 nkdavieaGavppLvrLLssede 26  
                  n  ++ +++++ pLv+ L+++ e
  KOO25408.1 1741 NQNLIAKCNGISPLVNILDDGTE 1763
                  566899************95433 PP

  == domain 33  score: 30.9 bits;  conditional E-value: 2.1e-10
                  HHHHHHHTTHHHHHHHHTTTSSHHHHHHHHHHHHHHT CS
         Arm    4 nkdavieaGavppLvrLLssedeevqeeAawALsNLa 40  
                     ++++aGa+ pLv+LL+++  ev+eeAa+ALs La
  KOO25408.1 1820 SPVLIVNAGAISPLVNLLTTGVSEVKEEAAGALSTLA 1856
                  56789*****************************987 PP

  == domain 34  score: -1.7 bits;  conditional E-value: 3.9
                  HHHHTTTSSHHHHHHHH CS
         Arm   17 LvrLLssedeevqeeAa 33  
                  Lv+L  s++ e qe+++
  KOO25408.1 1870 LVNLVGSGSAEAQEQVT 1886
                  77888888888887776 PP

  == domain 35  score: 9.3 bits;  conditional E-value: 0.0013
                  HHHHHHHHHTTHHHHHHHHTT...TSSHHHHHHHHHHHHHHT CS
         Arm    2 senkdavieaGavppLvrLLs...sedeevqeeAawALsNLa 40  
                  + n+ a+ +aGa+++Lv  L+    ++ + qe Aa+ Ls+L+
  KOO25408.1 1896 QANCVAIAKAGAIQRLVIQLKgggRTSIKAQELAAAVLSHLS 1937
                  67999*****************99999999999******998 PP

  == domain 36  score: 10.9 bits;  conditional E-value: 0.00042
                  HHHHHTTHHHHHHHHTTTSSHHHHHHHHHHHHHHTT CS
         Arm    6 davieaGavppLvrLLssedeevqeeAawALsNLaa 41  
                  +a+  a++++pLv +L+s+ +  q+ Aa+ Ls +a+
  KOO25408.1 1944 KAITAANGIRPLVVMLTSGTPVAQTHAAAVLSDIAR 1979
                  677789**************************9886 PP

  == domain 37  score: 20.8 bits;  conditional E-value: 3.1e-07
                  HHHHHHHHTTHHHHHHHHTT.TSSHHHHHHHHHHHHHHTT CS
         Arm    3 enkdavieaGavppLvrLLs.sedeevqeeAawALsNLaa 41  
                  +n +++i+ +++ pLv+LLs    ++ + eAa+AL +L+a
  KOO25408.1 1983 RNQRQIISENGIAPLVNLLSkENRPKAKAEAAGALLYLSA 2022
                  7999**********************************96 PP

  == domain 38  score: 16.0 bits;  conditional E-value: 1e-05
                  HHHHHTTHHHHHHHHTTTSSHHHHHHHHHHHHHHT CS
         Arm    6 davieaGavppLvrLLssedeevqeeAawALsNLa 40  
                  +a+ +aG++++Lv+LL+ ed+  ++ Aa+ L+ L+
  KOO25408.1 2029 KAIADAGGLRALVALLNEEDDLCLKKAAGGLAALC 2063
                  7899*************************997665 PP

  == domain 39  score: 1.5 bits;  conditional E-value: 0.37
                  HHHHHHHHTTHHHHHHHHTT.TSSHHHHHHHHHHHHHHT CS
         Arm    3 enkdavieaGavppLvrLLs.sedeevqeeAawALsNLa 40  
                  en dav +  ++  Lv LL+     ev  +Aa+AL+ La
  KOO25408.1 2068 ENQDAVEKNKGISKLVGLLKpPYTAEVSAAAAAALAVLA 2106
                  6777777899**********9999999999999998776 PP

  == domain 40  score: 7.6 bits;  conditional E-value: 0.0047
                  SHHHHHHHHHTTHHHHHHHHTT.T CS
         Arm    1 nsenkdavieaGavppLvrLLs.s 23  
                  ns+n d v  aG+++pLv LL+ +
  KOO25408.1 2109 NSKNQDKVAAAGGIEPLVYLLEdH 2132
                  799******************965 PP

  == domain 41  score: 1.5 bits;  conditional E-value: 0.38
                  HHHHHHHHHHHTT CS
         Arm   29 qeeAawALsNLaa 41  
                  ++eA++AL+ L++
  KOO25408.1 2163 KQEACGALWSLSS 2175
                  689*******996 PP

  == domain 42  score: 13.5 bits;  conditional E-value: 6.1e-05
                  HHHHHHHHTTHHHHHHHHTTTSSHHHHHHHHHHHH CS
         Arm    3 enkdavieaGavppLvrLLssedeevqeeAawALs 37  
                   n +a+ eaG++  Lv  L  ++ + q +Aa+AL+
  KOO25408.1 2179 LNQIAIAEAGGISKLVVVLGQGSLRAQDQAAGALA 2213
                  5899*****************************96 PP

  == domain 43  score: 4.8 bits;  conditional E-value: 0.035
                  HHHTTTSSHHHHHHHHHHHHHHTT CS
         Arm   18 vrLLssedeevqeeAawALsNLaa 41  
                  v+LL sed++ +  Aa+A+s La+
  KOO25408.1 2231 VALLGSEDPKACAKAARAISRLAR 2254
                  89*******************996 PP

  == domain 44  score: 9.0 bits;  conditional E-value: 0.0016
                  HHHHHHHTTHHHHHHHHTT..TSS CS
         Arm    4 nkdavieaGavppLvrLLs..sed 25  
                  n +a+ +aG++  LvrLL+  s+d
  KOO25408.1 2259 NQRAIANAGGIALLVRLLEanSKD 2282
                  7899***************87666 PP

  == domain 45  score: 25.0 bits;  conditional E-value: 1.5e-08
                  HHHHHHHHHTTHHHHHHHHTTTSSHHHHHHHHHHHHHHT CS
         Arm    2 senkdavieaGavppLvrLLssedeevqeeAawALsNLa 40  
                  + n +a+ +aG++ppL+rLL  ++++v +++a+AL+ La
  KOO25408.1 2318 EANQIAISKAGGMPPLIRLLLVGHPDVHRDVAGALGALA 2356
                  67999******************************9666 PP

  == domain 46  score: 11.9 bits;  conditional E-value: 0.0002
                  SHHHHHHHHHTTHHHHHHHHTT CS
         Arm    1 nsenkdavieaGavppLvrLLs 22  
                  n++ ++a+ +aG++ pLv+LL+
  KOO25408.1 2358 NDDLRKAIADAGGIAPLVELLR 2379
                  7899*****************8 PP

  == domain 47  score: -1.1 bits;  conditional E-value: 2.6
                  HHHHHHHHHHH CS
         Arm   29 qeeAawALsNL 39  
                  qe+Aa+ALs L
  KOO25408.1 2409 QEAAAGALSAL 2419
                  9*******965 PP

  == domain 48  score: 21.5 bits;  conditional E-value: 1.9e-07
                  HHHHHHHHTTHHHHHHHHTTTSSHHHHHHHHHHHHH CS
         Arm    3 enkdavieaGavppLvrLLssedeevqeeAawALsN 38  
                  +n+ av +aG++p Lv+LL+   +e +eeAa AL+ 
  KOO25408.1 2424 DNRVAVAQAGGIPLLVALLDGATDEAKEEAANALQT 2459
                  79*******************************985 PP

  == domain 49  score: 1.6 bits;  conditional E-value: 0.34
                  HHHTTTSSHHHHHHHHHHHHHHT CS
         Arm   18 vrLLssedeevqeeAawALsNLa 40  
                  v++L++++++ qe ++  L+NLa
  KOO25408.1 2476 VAMLKTGSPMGQEHVTKLLRNLA 2498
                  899*******************8 PP

  == domain 50  score: 16.9 bits;  conditional E-value: 5.3e-06
                  SHHHHHHHHHTTHHHHHHHHTTTSSHH CS
         Arm    1 nsenkdavieaGavppLvrLLssedee 27  
                  ++en+ a+ +aGavp Lvr L++++e+
  KOO25408.1 2500 DPENRSAIAKAGAVPELVRQLECGSER 2526
                  69********************99987 PP

  == domain 51  score: 7.9 bits;  conditional E-value: 0.0036
                  HHHHTTTSSHHHHHHHHHHHHHHT CS
         Arm   17 LvrLLssedeevqeeAawALsNLa 40  
                  Lv+LLss +e v++ Aa AL+ +a
  KOO25408.1 2553 LVKLLSSSKEAVRQRAAEALTDMA 2576
                  9*******************8665 PP

  == domain 52  score: -1.4 bits;  conditional E-value: 3.1
                  HHHHHTT....TSSHHHHHHHHHH CS
         Arm   16 pLvrLLs....sedeevqeeAawA 35  
                  pLv+LL+    ++ +e qe A++ 
  KOO25408.1 2596 PLVNLLKdglkDGRVEAQEYALRS 2619
                  8******99999999999999876 PP

  == domain 53  score: 7.7 bits;  conditional E-value: 0.0042
                  HHHHHHHTTHHHHHHHHTT..TSSHHHHHHHHHHHHHH CS
         Arm    4 nkdavieaGavppLvrLLs..sedeevqeeAawALsNL 39  
                   k+a++eaG++ pL++ L+    +   qe Aa+ +s L
  KOO25408.1 2628 AKEAIVEAGCIVPLIETLRqgKLSAVAQEHAAAVVSGL 2665
                  699****************9988888899988888766 PP

  == domain 54  score: 8.1 bits;  conditional E-value: 0.0032
                  HTTHHHHHHHHTTTSSHHHHHHHHHHHHHHTT CS
         Arm   10 eaGavppLvrLLssedeevqeeAawALsNLaa 41  
                  +aG+++pLv LLs++  e +  Aa+ L+ La+
  KOO25408.1 2677 RAGGIDPLVLLLSTGTAEAKAHAAASLAQLAR 2708
                  89*************************99986 PP

  == domain 55  score: 5.6 bits;  conditional E-value: 0.019
                  HHHHTTHHHHHHHHTTTSSHHHHHHHHHHHHHHT CS
         Arm    7 avieaGavppLvrLLssedeevqeeAawALsNLa 40  
                  ++ +aGav ++vr L +++ +  e+Aa+AL+ +a
  KOO25408.1 2715 QIAQAGAVSAFVRWLADPSLGPSEVAARALAEIA 2748
                  789***************************9987 PP

  == domain 56  score: 3.4 bits;  conditional E-value: 0.099
                  HHHHHHTTHHHHHHHHTTTSSHHH CS
         Arm    5 kdavieaGavppLvrLLssedeev 28  
                    ++ e Ga+ pLv++    +e v
  KOO25408.1 2755 QTQIAEEGAISPLVDMVGAWKEAV 2778
                  44667**********987776666 PP

  == domain 57  score: 7.8 bits;  conditional E-value: 0.0039
                  HHHHHHHTTHHHHHHHHTT..TSSHHHHHHHHH CS
         Arm    4 nkdavieaGavppLvrLLs..sedeevqeeAaw 34  
                  n + + e +++ pLv+LL+  se  e  + A+w
  KOO25408.1 2825 NQIRITEENGIGPLVELLKtpSETYEHSTKALW 2857
                  66678899***********44444444444444 PP

  == domain 58  score: 26.5 bits;  conditional E-value: 5e-09
                  SHHHHHHHHHTTHHHHHHHHTTTSSHHHHHHHHHHHHHHTT CS
         Arm    1 nsenkdavieaGavppLvrLLssedeevqeeAawALsNLaa 41  
                  n+en  a+ +aG++ pLv+LLsse+  + + Aa+AL+ La+
  KOO25408.1 2862 NEENQTAIAKAGGIAPLVQLLSSESAVTAQYAAAALQSLAR 2902
                  67999*********************************996 PP

  == domain 59  score: 35.3 bits;  conditional E-value: 8.5e-12
                  HHHHHHHHHTTHHHHHHHHTTTSSHHHHHHHHHHHHHHTT CS
         Arm    2 senkdavieaGavppLvrLLssedeevqeeAawALsNLaa 41  
                   en +a+ +aGa+ pLv+LL se++e+qe+A++AL +La+
  KOO25408.1 2905 AENQIAIAKAGAIAPLVNLLASESVETQENAVAALLHLAS 2944
                  689**********************************996 PP

  == domain 60  score: 2.0 bits;  conditional E-value: 0.27
                  HHHHHHHHTTTSSHHHHHHHHHHHHHHTT CS
         Arm   13 avppLvrLLssedeevqeeAawALsNLaa 41  
                  av++Lv+ Ls  + + q  Aa AL+ Laa
  KOO25408.1 2953 AVKQLVAVLSQRSATAQMKAAEALAVLAA 2981
                  799*********************99985 PP

  == domain 61  score: 8.4 bits;  conditional E-value: 0.0025
                  SHHHHHHHHHTTHHHHHHHHTT CS
         Arm    1 nsenkdavieaGavppLvrLLs 22  
                  ++en++a+  a+a++pLv LL 
  KOO25408.1 2983 SEENRKAITAANAIEPLVVLLG 3004
                  579******************8 PP

  == domain 62  score: 25.1 bits;  conditional E-value: 1.4e-08
                  HHHHHHHHTTHHHHHHHHTTTSSHHHHHHHHHHHHHHTT CS
         Arm    3 enkdavieaGavppLvrLLssedeevqeeAawALsNLaa 41  
                  +nk  +++ G+v pLv++Lss++ + q+ Aa+A++ Laa
  KOO25408.1 3030 DNKSSIVKVGGVGPLVAMLSSDSRDAQTHAACAIWQLAA 3068
                  69999*******************************996 PP

  == domain 63  score: 16.4 bits;  conditional E-value: 7.5e-06
                  HHHHHHHTTHHHHHHHHTT......TSSHHHHHHHHHHHHHHTT CS
         Arm    4 nkdavieaGavppLvrLLs......sedeevqeeAawALsNLaa 41  
                  nk  +++ Ga+ppLv+LL       +++   q+ Aa+AL++La+
  KOO25408.1 3072 NKTIIVDTGAIPPLVALLAigmtelDQKMLPQRYAAGALWHLAS 3115
                  677899*****************777777779**********96 PP

  == domain 64  score: 21.9 bits;  conditional E-value: 1.5e-07
                  HHHHHHHHHTTHHHHHHHHTTTSSHHHHHHHHHHHHHHT CS
         Arm    2 senkdavieaGavppLvrLLssedeevqeeAawALsNLa 40  
                   +nk ++ +aGa+p Lv+ L+s+  e +e Aa+ Ls La
  KOO25408.1 3117 ADNKTQIANAGAIPLLVEILYSKFSECREHAAGVLSALA 3155
                  689********************************9776 PP

  == domain 65  score: 19.8 bits;  conditional E-value: 6.3e-07
                  HHHHHHHTTHHHHHHHHTTTSSHHHHHHHHHHHHHHT CS
         Arm    4 nkdavieaGavppLvrLLssedeevqeeAawALsNLa 40  
                  nk+a+ +a ++pp v+LLs+    +++ Aa+AL+ L+
  KOO25408.1 3161 NKKAIFQARGIPPIVKLLSDSRLITRKYAASALWGLS 3197
                  99********************************998 PP

  == domain 66  score: 12.8 bits;  conditional E-value: 0.0001
                  HHHHTTHHHHHHHHTTTSSHHHH CS
         Arm    7 avieaGavppLvrLLssedeevq 29  
                  ++ eaGa+ppL+++L+   ee++
  KOO25408.1 3207 YIAEAGAIPPLIAMLQENEEETR 3229
                  899*************8888876 PP

>> Atx10homo_assoc  Spinocerebellar ataxia type 10 protein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.7   0.0    0.0019       1.7       9      69 ..     230     288 ..     223     291 .. 0.84
   2 !   13.9   0.0   4.6e-05     0.042       8      71 ..     271     332 ..     264     339 .. 0.90
   3 !   13.8   0.5   5.1e-05     0.046       6      70 ..     311     375 ..     306     381 .. 0.91
   4 ?    4.0   0.1     0.055        49      22      71 ..     413     460 ..     403     494 .. 0.83
   5 !    8.7   0.0     0.002       1.8      16      71 ..     526     579 ..     519     588 .. 0.90
   6 ?   -3.2   0.0       9.5   8.5e+03      17      69 ..     780     830 ..     771     836 .. 0.73
   7 !   18.6   0.4   1.5e-06    0.0014       7      69 ..     932     992 ..     927    1000 .. 0.93
   8 !    7.5   0.0    0.0045         4      10      69 ..    1028    1085 ..    1020    1091 .. 0.88
   9 ?    0.1   0.0      0.89     8e+02      11      38 ..    1113    1140 ..    1103    1170 .. 0.62
  10 ?   -2.8   0.0       7.2   6.4e+03      16      56 ..    1255    1293 ..    1247    1323 .. 0.49
  11 !    7.9   0.0    0.0035       3.1       4      58 ..    1506    1558 ..    1503    1577 .. 0.76
  12 ?    1.2   0.2      0.43   3.8e+02      18      69 ..    1740    1789 ..    1732    1802 .. 0.90
  13 ?    1.5   0.0      0.33     3e+02       7      69 ..    1972    2033 ..    1967    2050 .. 0.87
  14 !    8.0   0.0    0.0032       2.9       9      69 ..    2059    2118 ..    2051    2124 .. 0.83
  15 ?   -2.5   0.0         6   5.4e+03       7      33 ..    2247    2273 ..    2243    2282 .. 0.79
  16 ?   -3.1   0.1       9.1   8.1e+03      38      69 ..    2296    2326 ..    2293    2328 .. 0.80
  17 ?    2.4   0.1      0.18   1.6e+02      22      67 ..    2428    2471 ..    2421    2481 .. 0.81
  18 ?   -2.1   0.0       4.5     4e+03       7      33 ..    2742    2768 ..    2740    2771 .. 0.87
  19 !    7.2   0.1    0.0057       5.1      15      70 ..    2861    2914 ..    2853    2934 .. 0.88

  Alignments for each domain:
  == domain 1  score: 8.7 bits;  conditional E-value: 0.0019
  Atx10homo_assoc   9 lgnlvyknkevqdkvreldgleliLsqcniDdnnPfirewailairnLlegneenqelvae 69 
                      lgnl+ +n+e+qd v  l+g++ +L   n  d +  ++  a  a+  +  +n+e q+ +a+
       KOO25408.1 230 LGNLAANNREIQDIVAGLGGVAPLLALLNGMDVESQVE--AAAALAEMARDNPETQSAIAK 288
                      8************************9988777666554..556777899999999988875 PP

  == domain 2  score: 13.9 bits;  conditional E-value: 4.6e-05
  Atx10homo_assoc   8 llgnlvyknkevqdkvreldgleliLsqcniDdnnPfirewailairnLlegneenqelvaeLe 71 
                       l+ ++ +n+e+q+ + + +g+  +L      ++    + +++ ++ +L  +n+enq+ +a++ 
       KOO25408.1 271 ALAEMARDNPETQSAIAKSGGIGPLLAML--GSRVAAAQSRGMACLAQLARNNKENQDSIARMD 332
                      6899999*******************876..5677889999********************985 PP

  == domain 3  score: 13.8 bits;  conditional E-value: 5.1e-05
  Atx10homo_assoc   6 vrllgnlvyknkevqdkvreldgleliLsqcniDdnnPfirewailairnLlegneenqelvaeL 70 
                      ++ l++l+ +nke+qd + + dgl+ +       ++   +   a  ai  ++ +n enq++v +L
       KOO25408.1 311 MACLAQLARNNKENQDSIARMDGLTPLCRLLDAGEDAAEVLWCAACAIMEITRNNLENQRFVVDL 375
                      67899**********************9998888888888889999***************9877 PP

  == domain 4  score: 4.0 bits;  conditional E-value: 0.055
  Atx10homo_assoc  22 kvreldgleliLsqcniDdnnPfirewailairnLlegneenqelvaeLe 71 
                      ++ e+ ++  + +   +Dd     +e+a  ai  L  +n++nq  +a++ 
       KOO25408.1 413 TIAENATIFPLVQLLAVDDAR--ATEHAACAILSLGLDNKKNQIQIAQML 460
                      567777777777777777765..58**********************986 PP

  == domain 5  score: 8.7 bits;  conditional E-value: 0.002
  Atx10homo_assoc  16 nkevqdkvreldgleliLsqcniDdnnPfirewailairnLlegneenqelvaeLe 71 
                      ++e+q +v e +g++ ++ +    d  P i+++a  ai +L  +n + ++ +a+L 
       KOO25408.1 526 SRENQMTVAESGGISPLIACL--GDMRPKIQKQAAAAIAKLARNNDDTRSQIAKLG 579
                      5799************99875..5789**************************995 PP

  == domain 6  score: -3.2 bits;  conditional E-value: 9.5
  Atx10homo_assoc  17 kevqdkvreldgleliLsqcniDdnnPfirewailairnLlegneenqelvae 69 
                       +++d++ + +g++ i    ++  +n   ++ a +a+  L ++ e  q+ +a+
       KOO25408.1 780 AAARDEITNTSGITNIVALLQTLGSN--TKKFAAIALAALSKDHEVTQSAIAK 830
                      45678888888888888777776666..5778888888888888888888876 PP

  == domain 7  score: 18.6 bits;  conditional E-value: 1.5e-06
  Atx10homo_assoc   7 rllgnlvyknkevqdkvreldgleliLsqcniDdnnPfirewailairnLlegneenqelvae 69 
                      + l+nl+ +++++++ +++ +g++ +L+   +D++    +e a+ +i+ L+ ++++nq+ va+
       KOO25408.1 932 AALANLARESENNRQSIVDANGITPLLE--ILDASSAKAKENAVDTIKELCRNSKNNQAQVAR 992
                      579************************9..57999999*********************9985 PP

  == domain 8  score: 7.5 bits;  conditional E-value: 0.0045
  Atx10homo_assoc   10 gnlvyknkevqdkvreldgleliLsqcniDdnnPfirewailairnLlegneenqelvae 69  
                         ++ +n+++qd + e +++  + s     +  P+++  a  a+ nL  + ++nq  + +
       KOO25408.1 1028 KEMARDNRMNQDAITEAGAIGPLVSMLI--APSPVMQANAAGALANLARNHPDNQGAITK 1085
                       5677789****************99877..578**********************99987 PP

  == domain 9  score: 0.1 bits;  conditional E-value: 0.89
  Atx10homo_assoc   11 nlvyknkevqdkvreldgleliLsqcni 38  
                       +l+ +++ ++d++ +l+g+  +Ls  ++
       KOO25408.1 1113 SLATNHQGNKDTIAKLGGIDPLLSLLVT 1140
                       5667778888888888888888876655 PP

  == domain 10  score: -2.8 bits;  conditional E-value: 7.2
  Atx10homo_assoc   16 nkevqdkvreldgleliLsqcniDdnnPfirewailairnL 56  
                       n ++q  + + dg++ ++  ++  +     +++a  a+ +L
       KOO25408.1 1255 NATTQALIAKSDGIPPLIGLVKKSS--AEAQQHAACALWHL 1293
                       5555666666666665554433222..22334444444433 PP

  == domain 11  score: 7.9 bits;  conditional E-value: 0.0035
  Atx10homo_assoc    4 elvrllgnlvyknkevqdkvreldgleliLsqcniDdnnPfirewailairnLle 58  
                       +    l+ ++++n ++qd + + d+++ +L+++++ +   + +e+a  ai +L  
       KOO25408.1 1506 QAAITLAEIAHDNHDMQDAIIHADAVAPLLTCIRTGS--QLGQEHAARAIWHLAA 1558
                       5556799************************988755..4666666666666554 PP

  == domain 12  score: 1.2 bits;  conditional E-value: 0.43
  Atx10homo_assoc   18 evqdkvreldgleliLsqcniDdnnPfirewailairnLlegneenqelvae 69  
                       ++q+ + +++g++ + +   +Dd     +++a  a+  L  +n +nq  +a+
       KOO25408.1 1740 SNQNLIAKCNGISPLVN--ILDDGTEQAHKHAENALARLAFQNIDNQISIAK 1789
                       78999*******99988..5899999*********************99986 PP

  == domain 13  score: 1.5 bits;  conditional E-value: 0.33
  Atx10homo_assoc    7 rllgnlvyknkevqdkvreldgleliLsqcniDdnnPfirewailairnLlegneenqelvae 69  
                       ++l+ ++  + ++q ++ +++g++ + +     +n P  +  a  a+ +L  g ++ q+ +a+
       KOO25408.1 1972 AVLSDIARLSVRNQRQIISENGIAPLVN-LLSKENRPKAKAEAAGALLYLSAGQPATQKAIAD 2033
                       5777777788899**********99765.6678999***********************9985 PP

  == domain 14  score: 8.0 bits;  conditional E-value: 0.0032
  Atx10homo_assoc    9 lgnlvyknkevqdkvreldgleliLsqcniDdnnPfirewailairnLlegneenqelvae 69  
                       l+ l+  + e+qd v +++g++ +    +       ++  a  a+  L egn++nq+ va+
       KOO25408.1 2059 LAALCQGSMENQDAVEKNKGISKLVGLLKPPYTAE-VSAAAAAALAVLAEGNSKNQDKVAA 2118
                       789999***************99888776543333.3446778999***********9985 PP

  == domain 15  score: -2.5 bits;  conditional E-value: 6
  Atx10homo_assoc    7 rllgnlvyknkevqdkvreldgleliL 33  
                       r ++ l+  + ++q  + + +g++l+ 
       KOO25408.1 2247 RAISRLARTHVSNQRAIANAGGIALLV 2273
                       678888888999999999999998875 PP

  == domain 16  score: -3.1 bits;  conditional E-value: 9.1
  Atx10homo_assoc   38 iDdnnPfirewailairnLlegneenqelvae 69  
                        D+n  + re a  ai  +  +ne+nq  +++
       KOO25408.1 2296 ADANRAVCREMA-SAIWSMAAKNEANQIAISK 2326
                       577777888887.58999999******98875 PP

  == domain 17  score: 2.4 bits;  conditional E-value: 0.18
  Atx10homo_assoc   22 kvreldgleliLsqcniDdnnPfirewailairnLlegneenqelv 67  
                        v + +g++l+     +D   +  +e a  a++ L+ +n+ nq  +
       KOO25408.1 2428 AVAQAGGIPLLVA--LLDGATDEAKEEAANALQTLVLQNASNQLAI 2471
                       5666777776654..5678888899******************877 PP

  == domain 18  score: -2.1 bits;  conditional E-value: 4.5
  Atx10homo_assoc    7 rllgnlvyknkevqdkvreldgleliL 33  
                       r l+ ++ +n+++q ++ e+++++ + 
       KOO25408.1 2742 RALAEIALDNPDTQTQIAEEGAISPLV 2768
                       57899999*************998876 PP

  == domain 19  score: 7.2 bits;  conditional E-value: 0.0057
  Atx10homo_assoc   15 knkevqdkvreldgleliLsqcniDdnnPfirewailairnLlegneenqelvaeL 70  
                        n+e+q  + + +g++ + +  +  ++  +  ++a  a++ L  + +enq  +a+ 
       KOO25408.1 2861 ANEENQTAIAKAGGIAPLVQLLS--SESAVTAQYAAAALQSLAREHAENQIAIAKA 2914
                       5899*************999766..567899*******************999985 PP

>> V-ATPase_H_N  V-ATPase subunit H
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.0       1.6   1.5e+03     105     199 ..      41     134 ..      10     163 .. 0.57
   2 ?    4.8   0.0     0.016        15     109     205 ..     171     305 ..     150     352 .. 0.71
   3 ?    1.8   0.1      0.13   1.2e+02      90     201 ..     442     590 ..     417     622 .. 0.66
   4 !    8.8   0.1   0.00096      0.86     160     200 ..    1233    1317 ..     764    1339 .. 0.74
   5 ?    0.1   0.0      0.43   3.9e+02     106     179 ..    1359    1428 ..    1339    1431 .. 0.75
   6 ?   -3.3   0.0       4.7   4.2e+03     117     250 ..    1542    1581 ..    1498    1592 .. 0.59
   7 ?   -0.4   0.1      0.63   5.7e+02     106     141 ..    1830    1865 ..    1701    2011 .. 0.51
   8 ?    3.9   0.0      0.03        26      95     201 ..    2217    2390 ..    2189    2467 .. 0.62
   9 ?   -1.4   0.0       1.2   1.1e+03     124     199 ..    2453    2520 ..    2435    2531 .. 0.60
  10 !    6.3   0.3    0.0055       4.9      98     201 ..    2542    2651 ..    2528    2933 .. 0.79
  11 !   18.5   0.0   1.1e-06     0.001      87     202 ..    2932    3051 ..    2917    3068 .. 0.82
  12 ?    2.5   0.0     0.081        73     131     209 ..    3113    3183 ..    3085    3230 .. 0.68

  Alignments for each domain:
  == domain 1  score: -1.8 bits;  conditional E-value: 1.6
  V-ATPase_H_N 105 pwkpflkllnrqddfivllalrllakllvqgkkksnklv..esaLnrllqlLssqlssstnevieiavrllqellr.tkeyRelfveadgvstlisi 198
                   +++ ++k +++ d+ i++ ++  l  ++   + ++        a++ l++lLs  +++ ++    +a+ +l+ ++  + ey +++v a g + l+++
    KOO25408.1  41 LINKLVKRIKEGDAEIKEFSAAALKEIAGMDHGSHAAELsrAGAIEPLVRLLSCGAANTQC----SAASALAGIAVmKAEYQKQIVAAGGGPALVAL 133
                   4555555555566666666666666665544433333223455556666666665555555....44444444333144666666666666666666 PP

  V-ATPase_H_N 199 l 199
                   l
    KOO25408.1 134 L 134
                   6 PP

  == domain 2  score: 4.8 bits;  conditional E-value: 0.016
  V-ATPase_H_N 109 flkllnrqddfivllalrllakllvqgkkksnklv.esaLnrllqlLssqlss....................................stneviei 168
                   ++ ll++  ++ +  a++  a+ +++++  + ++    a++ ll+lL s  ++                                     + e++  
    KOO25408.1 171 LVGLLSNGSAIAQAAAAQATANAAAYSAHAQREIAkAGAIPLLLTLLGSGKAQkpaavalgnlaannreiqdivaglggvapllallngMDVESQVE 267
                   4558888899999999999999999999999998778889999999999555547778888888877777777777777777777777744444455 PP

  V-ATPase_H_N 169 avrllqellrtk.eyRelfveadgvstlisilrstvan 205
                   a+ +l+e++r + e  +++ ++ g+++l+++l+s va+
    KOO25408.1 268 AAAALAEMARDNpETQSAIAKSGGIGPLLAMLGSRVAA 305
                   66666666665424555555577777777777644333 PP

  == domain 3  score: 1.8 bits;  conditional E-value: 0.13
  V-ATPase_H_N  90 rvelflslakkeeqdpwkpflkllnrqddfivllalrllakllvqgkkksnklv.esaLnrllqlLssqlss......................... 160
                   + +l+l+ +kk++ ++++++++ll++  + +++ a + l  l+ q++  +  +    +   l++lL+   ++                         
    KOO25408.1 442 ILSLGLD-NKKNQIQIAQMLIELLTNGSEATQDRATKALWGLVNQNPSAHDAIAkAGDPAALVELLKRDYADvkdyalwslslaisrenqmtvaesg 537
                   3444444.33333349999999999999999999999999999999999988766444466666666644444555555666666655555554444 PP

  V-ATPase_H_N 161 .stnevi..............eiavrllqellrt.keyRelfveadgvstlisilrs 201
                                        + a+ ++++l+r+ ++ R+++ +  gv+++i++l+ 
    KOO25408.1 538 gI----SpliaclgdmrpkiqKQAAAAIAKLARNnDDTRSQIAKLGGVKPIIKLLQP 590
                   40....044444444444444777777777777526789999999999999998863 PP

  == domain 4  score: 8.8 bits;  conditional E-value: 0.00096
  V-ATPase_H_N  160 s............................................stnevieiavrllqellrtkeyRelfveadgvstlisilr 200 
                    +                                            s++e ++ a+ +l  l++  e R ++vea+g+++lis+l+
    KOO25408.1 1233 QakmakrvqaqaarsmlclaadnattqaliaksdgippliglvkkSSAEAQQHAACALWHLASLAENRAAIVEAQGIKPLISMLT 1317
                    0333333333333333333333333333333333333333333335666778888888888888888999999999999988774 PP

  == domain 5  score: 0.1 bits;  conditional E-value: 0.43
  V-ATPase_H_N  106 wkpflkllnrqddfivllalrllakllvqgkkksnklvesaLnrllqlLssqlssstnevieiavrllqellrt 179 
                    + p++kll++      ++a+ lla l+  ++++++     a    +++ +++lss t +  e+a+rll+ l+ +
    KOO25408.1 1359 VLPLVKLLSKGTPGAEQMAAALLAELALVSRNRDKI----ANAGCIESATKLLSSTTVGTPEVAARLLAHLAYK 1428
                    678888888888889999999999999888888877....4466677777777777777888888888888765 PP

  == domain 6  score: -3.3 bits;  conditional E-value: 4.7
  V-ATPase_H_N  117 ddfivllalrllakllvqgkkksnklvesaLnrllqlLssqlssstnevieiavrllqellrtkeyRelfveadgvstlisilrstvanstrvgi 211 
                     +  +++a+r +                                                                                   
    KOO25408.1 1542 SQLGQEHAARAI----------------------------------------------------------------------------------- 1553
                    444444444444................................................................................... PP

  V-ATPase_H_N  212 QlqYqvllclWlLsFekkiaeelvkkkelipllvdilrd 250 
                              W L+   ++ +elv k   ip lv++l++
    KOO25408.1 1554 ----------WHLAALTEGQGELVAKG-AIPELVQLLKT 1581
                    ..........44444555555555554.55555555543 PP

  == domain 7  score: -0.4 bits;  conditional E-value: 0.63
  V-ATPase_H_N  106 wkpflkllnrqddfivllalrllakllvqgkkksnk 141 
                    ++p+++ll+   + +++ a+  l +l+  ++ ++  
    KOO25408.1 1830 ISPLVNLLTTGVSEVKEEAAGALSTLAFNSPSTQLA 1865
                    333333333333333333333333333333333333 PP

  == domain 8  score: 3.9 bits;  conditional E-value: 0.03
  V-ATPase_H_N   95 lslakkeeqdpwkpflkllnrqddfivllalrllakllvqgkkksnklv....esaLnrllqlLssqlss......................... 160 
                    l+  k +e +++++++ ll ++d     +a+r + +l++++  ++  +       +L rll+  s+  ss                         
    KOO25408.1 2217 LDNMK-NEFSIAEMMVALLGSEDPKACAKAARAISRLARTHVSNQRAIAnaggIALLVRLLEANSKDKSSfgegaaetaeadanravcremasai 2310
                    33333.33348999999999999999999999999999999888888777444444444444444444448888888888888888888888888 PP

  V-ATPase_H_N  161 ..................................stnevieiavrllqellrtkeyRelfveadgvstlisilr..........s 201 
                                                      +       ++ +l +l++++++R+++ +a g+ +l+++lr          +
    KOO25408.1 2311 wsmaakneanqiaiskaggmpplirlllvghpdvH-----RDVAGALGALASNDDLRKAIADAGGIAPLVELLRpppngyppqdA 2390
                    87777776666666666666666655555443330.....445555666666666666666666666666666544444444431 PP

  == domain 9  score: -1.4 bits;  conditional E-value: 1.2
  V-ATPase_H_N  124 alrllakllvqgkkksnklvesaLnrllqlLssqlssstnevi..........eiavrllqellrtkeyRelfveadgvstlisil 199 
                    a++ l +l+ q++ ++      ++n  +                         e +++ll +l++  e R+++ +a  v+ l++ l
    KOO25408.1 2453 AANALQTLVLQNASNQLA----IVNEAV--------------AmlktgspmgqEHVTKLLRNLAQDPENRSAIAKAGAVPELVRQL 2520
                    333333333333333333....334444..............14444444444899999999999999999999999999999877 PP

  == domain 10  score: 6.3 bits;  conditional E-value: 0.0055
  V-ATPase_H_N   98 akkeeqdpwkpflkllnrqddfivllalrllakllvqgkkksnklv..esaL.nrllqlLssqlssstnevieiavrllqellrtkeyRelfvea 189 
                    ++k+  ++ + ++kll+++ + + + a+  l+ +++ +  + ++ +  ++a    l++lL++ l++   e +e a+r+l ++ + ++ +e++vea
    KOO25408.1 2542 SDKDRATVTNELVKLLSSSKEAVRQRAAEALTDMAAGEGSHTKHRQgnQNANgVPLVNLLKDGLKDGRVEAQEYALRSLLAI-SDNSAKEAIVEA 2635
                    4444444888888888888888888888888888888877777766643332356788888888888888888888888765.456678888888 PP

  V-ATPase_H_N  190 dgvstlisilr....s 201 
                     ++ +li+ lr    s
    KOO25408.1 2636 GCIVPLIETLRqgklS 2651
                    8888888877544431 PP

  == domain 11  score: 18.5 bits;  conditional E-value: 1.1e-06
  V-ATPase_H_N   87 dksrvelflslakkeeqd...pwkpflkllnrqddfivllalrllakllvqgkkksnklv.esaLnrllqlLssqlssstnevieiavrllqell 177 
                    +++ v+++l la ++  +    +k+++ +l+++ +  +++a+  la l++ ++++ + ++  +a++ l+ lL +    + n  +e a+  l+ l+
    KOO25408.1 2932 QENAVAALLHLASQDVASrntAVKQLVAVLSQRSATAQMKAAEALAVLAARSEENRKAITaANAIEPLVVLLGDGRRVKVNTPQERAAAVLADLA 3026
                    4444444444455444445779************************************9999************999999999************ PP

  V-ATPase_H_N  178 rtkeyRelfveadgvstlisilrst 202 
                    rt + ++ +v++ gv++l+++l+s+
    KOO25408.1 3027 RTGDNKSSIVKVGGVGPLVAMLSSD 3051
                    ********************99422 PP

  == domain 12  score: 2.5 bits;  conditional E-value: 0.081
  V-ATPase_H_N  131 llvqgkkksnklv.esaLnrllqlLssqlssstnevieiavrllqellrtke.yRelfveadgvstlisilrstvanstrv 209 
                    l++ +++k +      a++ l+++L s++s+      e a+  l++l+rt+   ++++++a g+++++++l     +++r+
    KOO25408.1 3113 LASSADNKTQI-AnAGAIPLLVEILYSKFSE----CREHAAGVLSALARTQGgNKKAIFQARGIPPIVKLL-----SDSRL 3183
                    33333333333.2367777777777777776....3589***********9637999**************.....33333 PP

>> Arm_2  Armadillo-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.0   0.0    0.0082       7.3      32     163 ..     185     319 ..     156     375 .. 0.55
   2 ?   -0.6   0.0      0.81   7.3e+02      15      69 ..     335     391 ..     321     411 .. 0.73
   3 ?    2.0   0.0      0.14   1.2e+02     137     185 ..     458     507 ..     441     514 .. 0.84
   4 ?   -0.3   0.0      0.66     6e+02      46      89 ..     529     572 ..     510     578 .. 0.88
   5 ?    5.3   0.3     0.013        12      29      88 ..     765     824 ..     758     831 .. 0.91
   6 !   10.1   0.0   0.00044      0.39      16      97 ..     836     917 ..     823     924 .. 0.86
   7 !    7.3   1.7    0.0033       2.9      15      89 ..     913     987 ..     909    1024 .. 0.74
   8 ?    2.8   0.1     0.078        70      44      88 ..    1035    1080 ..     996    1086 .. 0.83
   9 ?    1.4   0.0       0.2   1.8e+02      17      61 ..    1092    1136 ..    1085    1166 .. 0.81
  10 ?    2.7   0.0     0.078        70      30      89 ..    1242    1301 ..    1235    1306 .. 0.87
  11 !   10.6   0.1    0.0003      0.27      46     169 ..    1741    1863 ..    1731    1873 .. 0.85
  12 ?    0.3   0.0      0.43   3.9e+02     138     180 ..    1869    1911 ..    1864    1915 .. 0.87
  13 !    7.7   0.0    0.0024       2.2     119     187 ..    1977    2047 ..    1922    2081 .. 0.69
  14 ?   -1.6   0.0       1.7   1.5e+03      18      69 ..    2230    2282 ..    2220    2285 .. 0.74
  15 ?   -3.7   0.0         7   6.3e+03     136     179 ..    2330    2373 ..    2309    2377 .. 0.73
  16 ?    2.3   0.1      0.11        98      37      88 ..    2416    2468 ..    2407    2525 .. 0.55
  17 ?   -3.0   0.0       4.5     4e+03     143     166 ..    2605    2628 ..    2551    2653 .. 0.70
  18 !    6.7   0.2    0.0047       4.2      16     146 ..    2877    3006 ..    2825    3068 .. 0.75

  Alignments for each domain:
  == domain 1  score: 6.0 bits;  conditional E-value: 0.0082
       Arm_2  32 ialltlgnsaaysv.nqdiirdlggitiianllsksnaevkekalnalnnlsenvenqkkikvyvnqvckdivs.splNsevQlagLklltnlsvtn.e 127
                 +a  + +n+aays+ +q  i + g i+++  ll + +a+ k+ a  al nl+ n+++ + i + +  v     +   +  e Q+++   l +++  n e
  KOO25408.1 185 AAAQATANAAAYSAhAQREIAKAGAIPLLLTLLGSGKAQ-KP-AAVALGNLAANNREIQDIVAGLGGVAPLLALlNGMDVESQVEAAAALAEMARDNpE 281
                 444556677777653566777777777777777654433.33.34447777777777666666666665544330345566666666666666655423 PP

       Arm_2 128 yqhllvsy..isellsLLskGnekikvqvLkvllnlse 163
                  q  ++++  i  ll +L +     +   +  l  l+ 
  KOO25408.1 282 TQSAIAKSggIGPLLAMLGSRVAAAQSRGMACLAQLAR 319
                 44455444445555555555555555555555555555 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 0.81
       Arm_2  15 ekllalLkssedpl..iqeialltlgnsaaysvnqdiirdlggitiianllsksnae 69 
                   l  lL   ed +  +  +a  ++ +  +   nq ++ dlggi  +a l+  s++ 
  KOO25408.1 335 TPLCRLLDAGEDAAevLWCAACAIMEITRNNLENQRFVVDLGGISYLAGLIKLSSNT 391
                 556666777777641134567788999999999***************999866543 PP

  == domain 3  score: 2.0 bits;  conditional E-value: 0.14
       Arm_2 137 sellsLLskGnekikvqvLkvllnl.seNpamtrellsakvlssllslfn 185
                 + l++LL++G+e ++    k l  l  +Np + + + +a  +++l+ l +
  KOO25408.1 458 QMLIELLTNGSEATQDRATKALWGLvNQNPSAHDAIAKAGDPAALVELLK 507
                 5799***********9999999988358********99999999998765 PP

  == domain 4  score: -0.3 bits;  conditional E-value: 0.66
       Arm_2  46 nqdiirdlggitiianllsksnaevkekalnalnnlsenvenqk 89 
                 nq ++ + ggi  + ++l +  ++++++a  a+ +l+ n+++ +
  KOO25408.1 529 NQMTVAESGGISPLIACLGDMRPKIQKQAAAAIAKLARNNDDTR 572
                 89999999999999999******************999988765 PP

  == domain 5  score: 5.3 bits;  conditional E-value: 0.013
       Arm_2  29 iqeialltlgnsaaysvnqdiirdlggitiianllsksnaevkekalnalnnlsenvenq 88 
                 ++e a+ +l+n aa ++++d i +  git i +ll +   + k+ a +al +ls+ +e  
  KOO25408.1 765 VHEDATDALANLAADAAARDEITNTSGITNIVALLQTLGSNTKKFAAIALAALSKDHEVT 824
                 7999999***********************************************988754 PP

  == domain 6  score: 10.1 bits;  conditional E-value: 0.00044
       Arm_2  16 kllalLkssedpliqeialltlgnsaaysvnqdiirdlggitiianllsksnaevkekalnalnnlsenvenqkkikvyvnq 97 
                  l++lL   e p  qe+a  ++   a + +n+ +i + ggi+ +  ll  +n++ +e+a  al  ls  + n  +i   + +
  KOO25408.1 836 PLVSLLDGNEGPEAQEAAAGAILALADHEANRHMITESGGIGFLVMLLGCTNPKSREHAEGALVRLSIENANRVQIIKKLVH 917
                 5999***************999999*************************************99999766665555444444 PP

  == domain 7  score: 7.3 bits;  conditional E-value: 0.0033
       Arm_2  15 ekllalLkssedpliqeialltlgnsaays.vnqdiirdlggitiianllsksnaevkekalnalnnlsenvenqk 89 
                 +kl+++L+       qe+a  +l+n a  s  n++ i d  git + ++l  s+a+ ke+a+ ++ +l  n++n++
  KOO25408.1 913 KKLVHMLQDPGAG-GQEQAAAALANLARESeNNRQSIVDANGITPLLEILDASSAKAKENAVDTIKELCRNSKNNQ 987
                 6666666655443.4677777888877665156777778877777888********************99988754 PP

  == domain 8  score: 2.8 bits;  conditional E-value: 0.078
       Arm_2   44 svnqdiirdlggitiianllsksnaevkekalnalnnlsenv.enq 88  
                   +nqd i + g i+ + ++l  +++ ++ +a  al nl+ n+ +nq
  KOO25408.1 1035 RMNQDAITEAGAIGPLVSMLIAPSPVMQANAAGALANLARNHpDNQ 1080
                  58************************************99962455 PP

  == domain 9  score: 1.4 bits;  conditional E-value: 0.2
       Arm_2   17 llalLkssedpliqeialltlgnsaaysvnqdiirdlggitiian 61  
                  l  l+k  +d +  e a  + + + ++  n+d+i +lggi  + +
  KOO25408.1 1092 LCVLMKEGSDDTKDESAFAIWSLATNHQGNKDTIAKLGGIDPLLS 1136
                  66789999999****************************965444 PP

  == domain 10  score: 2.7 bits;  conditional E-value: 0.078
       Arm_2   30 qeialltlgnsaaysvnqdiirdlggitiianllsksnaevkekalnalnnlsenvenqk 89  
                   ++a  +l+ +a  + +q++i + +gi+ +  l+ ks+ae +++a  al  l++ +en  
  KOO25408.1 1242 AQAARSMLCLAADNATTQALIAKSDGIPPLIGLVKKSSAEAQQHAACALWHLASLAENRA 1301
                  5777889999**********************************9999988888777765 PP

  == domain 11  score: 10.6 bits;  conditional E-value: 0.0003
       Arm_2   46 nqdiirdlggitiianllsksnaevkekalnalnnls.envenqkkikvyvnqvckdivssplNsevQlagLklltnlsvtneyqhllvs...yise 138 
                  nq++i +  gi  + n+l +  ++ +++a nal  l+ +n +nq +i  y    c + ++ + N+  Q  g ++l +l+  n    +l+     is 
  KOO25408.1 1741 NQNLIAKCNGISPLVNILDDGTEQAHKHAENALARLAfQNIDNQISIAKY----CVA-LLGNQNTGAQRRGARVLRDLAAANPGSPVLIVnagAISP 1832
                  9******************************9998874677777776655....554.56789******************9988766431237*** PP

       Arm_2  139 llsLLskGnekikvqvLkvllnlseNpamtr 169 
                  l++LL++G  ++k +    l+ l+ N   t+
  KOO25408.1 1833 LVNLLTTGVSEVKEEAAGALSTLAFNSPSTQ 1863
                  *************999999999999987665 PP

  == domain 12  score: 0.3 bits;  conditional E-value: 0.43
       Arm_2  138 ellsLLskGnekikvqvLkvllnlseNpamtrellsakvlssl 180 
                   l++L+ +G+ + + qv ++ll l++ +a+   + +a + + l
  KOO25408.1 1869 GLVNLVGSGSAEAQEQVTQLLLRLAHDQANCVAIAKAGAIQRL 1911
                  5789999**********************99988888776655 PP

  == domain 13  score: 7.7 bits;  conditional E-value: 0.0024
       Arm_2  119 ltnlsvtneyqhllvsyisellsLLskGne.kikvqvLkvllnlseNpamtre.llsakvlssllslfnkk 187 
                  +  lsv+n+ q +  + i+ l++LLsk n+ k k +    ll ls+ + +t++ +  a +l +l++l n++
  KOO25408.1 1977 IARLSVRNQRQIISENGIAPLVNLLSKENRpKAKAEAAGALLYLSAGQPATQKaIADAGGLRALVALLNEE 2047
                  55666666666666666666666666666545666666666666665544444133455666666665554 PP

  == domain 14  score: -1.6 bits;  conditional E-value: 1.7
       Arm_2   18 lalLkssedpliqeialltlg.nsaaysvnqdiirdlggitiianllsksnae 69  
                  +  L  sedp    +a  +++  +  +  nq  i + ggi+++  ll  +++ 
  KOO25408.1 2230 MVALLGSEDPKACAKAARAISrLARTHVSNQRAIANAGGIALLVRLLEANSKD 2282
                  44455678887766666666515778999*************99999877665 PP

  == domain 15  score: -3.7 bits;  conditional E-value: 7
       Arm_2  136 isellsLLskGnekikvqvLkvllnlseNpamtrellsakvlss 179 
                  ++ l++LL  G   ++  v   l  l++N +  + +  a + + 
  KOO25408.1 2330 MPPLIRLLLVGHPDVHRDVAGALGALASNDDLRKAIADAGGIAP 2373
                  67899999999999999999999999999998888877766655 PP

  == domain 16  score: 2.3 bits;  conditional E-value: 0.11
       Arm_2   37 lgnsaaysvnqdiirdlggitiianllsksnaevkekalnalnnls.envenq 88  
                  l+  a+ + n+  + + ggi+++ +ll     e ke a nal+ l  +n+ nq
  KOO25408.1 2416 LSALAVLADNRVAVAQAGGIPLLVALLDGATDEAKEEAANALQTLVlQNASNQ 2468
                  55555555566666666666666666666666666666666664431222222 PP

  == domain 17  score: -3.0 bits;  conditional E-value: 4.5
       Arm_2  143 LskGnekikvqvLkvllnlseNpa 166 
                  L+ G ++ + + L+ ll +s+N a
  KOO25408.1 2605 LKDGRVEAQEYALRSLLAISDNSA 2628
                  455666666666666666666654 PP

  == domain 18  score: 6.7 bits;  conditional E-value: 0.0047
       Arm_2   16 kllalLkssedpliqeialltl.gnsaaysvnqdiirdlggitiianllsksnaevkekalnalnnlsenvenqkkikvyvnqvckdivssplNsev 111 
                   l++lL s +  +  + a  +l + +  ++ nq  i + g i+ + nll +++ e +e+a+ al  l+  ++++ + ++ v+q++   +  +  +++
  KOO25408.1 2877 PLVQLLSSES-AVTAQYAAAALqSLAREHAENQIAIAKAGAIAPLVNLLASESVETQENAVAALLHLA--SQDVASRNTAVKQLVAVLSQRSATAQM 2970
                  5777775544.55555555555277889**********************************998664..455555556666666555444444444 PP

       Arm_2  112 Qla.gLklltnlsvtneyqhllvsyisellsLLskG 146 
                    a +L +l   s +n      ++ i+ l+ LL  G
  KOO25408.1 2971 KAAeALAVLAARSEENRKAITAANAIEPLVVLLGDG 3006
                  433146666666666666666667777777777666 PP

>> RICTOR_N  Rapamycin-insensitive companion of mTOR, N-term
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.0   0.0     0.011        10     139     186 ..     529     577 ..     521     613 .. 0.79
   2 ?    4.5   0.0     0.017        15     112     194 ..     794     880 ..     779     993 .. 0.82
   3 ?    3.5   0.0     0.032        28     140     211 ..    1259    1327 ..    1256    1345 .. 0.85
   4 ?    4.4   0.0     0.017        15     143     209 ..    1704    1770 ..    1700    1788 .. 0.61
   5 ?    0.9   0.0      0.21   1.8e+02     140     181 ..    1821    1863 ..    1810    1872 .. 0.85
   6 !    5.9   0.0    0.0059       5.3     127     199 ..    1972    2046 ..    1952    2087 .. 0.83
   7 ?   -2.9   0.0       2.8   2.5e+03     126     160 ..    2099    2133 ..    2093    2138 .. 0.89
   8 ?   -2.8   0.0       2.6   2.3e+03     143     185 ..    2324    2366 ..    2321    2395 .. 0.90
   9 ?   -3.4   0.0         4   3.6e+03     109     186 ..    2549    2635 ..    2542    2639 .. 0.73
  10 ?    3.2   0.0     0.039        35     143     227 ..    2716    2807 ..    2699    2852 .. 0.70
  11 ?    4.1   0.3     0.021        19     142     199 ..    2910    2963 ..    2864    2993 .. 0.76

  Alignments for each domain:
  == domain 1  score: 5.0 bits;  conditional E-value: 0.011
    RICTOR_N 139 dpelvveagGlrvllnalldgsselaesllvallylL.dspetrkylrk 186
                 + + v+e+gG++ l+ +l d  +++++  ++a+ +l  ++++tr  + k
  KOO25408.1 529 NQMTVAESGGISPLIACLGDMRPKIQKQAAAAIAKLArNNDDTRSQIAK 577
                 7789******************************997456678876665 PP

  == domain 2  score: 4.5 bits;  conditional E-value: 0.017
    RICTOR_N 112 alvavae...hedDrlrricletLaElllldpelvveagGlrvllnalld.gsselaesllvallylLdspetrkylrkgldleill 194
                  +va+ +   +++ ++++i+l+ L     +  + +++ag++  l+++l   + +e++e+ + a+l l d+++ r+++ ++  +  l+
  KOO25408.1 794 NIVALLQtlgSNTKKFAAIALAALSKDHEVTQSAIAKAGAIGPLVSLLDGnEGPEAQEAAAGAILALADHEANRHMITESGGIGFLV 880
                 5566666555666778888888888878888889999*******9999888999*********************998876665555 PP

  == domain 3  score: 3.5 bits;  conditional E-value: 0.032
    RICTOR_N  140 pelvveagGlrvllnalldgsselaesllvallylLdspetrkylrkgldleillspftdslekekkkesne 211 
                   +l+++++G+  l+ ++  +s+e+++  + al +l +  e r  + +   ++ l+s +t    +e+ +e +e
  KOO25408.1 1259 QALIAKSDGIPPLIGLVKKSSAEAQQHAACALWHLASLAENRAAIVEAQGIKPLISMLTA---DEELDEGRE 1327
                  5799*******************************************************9...334444444 PP

  == domain 4  score: 4.4 bits;  conditional E-value: 0.017
    RICTOR_N  143 vveagGlrvllnalldgsselaesllvallylLdspetrkylrkgldleillspftdslekekkkes 209 
                  ++ agG+  lln l++g++++ e  + al +l    +  + + k   ++ l+ ++ d +e+ +k  +
  KOO25408.1 1704 IADAGGVLPLLNQLTNGTMQARENAAGALWHLALEVSNQNLIAKCNGISPLVNILDDGTEQAHKHAE 1770
                  5667777777777777777777777777777766666666666666666666666664443333333 PP

  == domain 5  score: 0.9 bits;  conditional E-value: 0.21
    RICTOR_N  140 pelvveagGlrvllnalldgsselaesllvallyl.Ldspetr 181 
                  p l+v+ag+++ l+n+l+ g se++e  + al  l  +sp+t 
  KOO25408.1 1821 PVLIVNAGAISPLVNLLTTGVSEVKEEAAGALSTLaFNSPSTQ 1863
                  789**************************99987635667666 PP

  == domain 6  score: 5.9 bits;  conditional E-value: 0.0059
    RICTOR_N  127 icletLaElllldpelvveagGlrvllnalld.gsselaesllvallyl.Ldspetrkylrkgldleillspftd 199 
                  + l  +a l++++ + +++ +G+  l+n+l+  + ++++   + allyl    p+t k +     l  l++ + +
  KOO25408.1 1972 AVLSDIARLSVRNQRQIISENGIAPLVNLLSKeNRPKAKAEAAGALLYLsAGQPATQKAIADAGGLRALVALLNE 2046
                  556668999**********************99***************934689999999888888888888877 PP

  == domain 7  score: -2.9 bits;  conditional E-value: 2.8
    RICTOR_N  126 ricletLaElllldpelvveagGlrvllnalldgs 160 
                  +++l++LaE    + + v++agG++ l+ +l d++
  KOO25408.1 2099 AAALAVLAEGNSKNQDKVAAAGGIEPLVYLLEDHP 2133
                  6899************************9999876 PP

  == domain 8  score: -2.8 bits;  conditional E-value: 2.6
    RICTOR_N  143 vveagGlrvllnalldgsselaesllvallylLdspetrkylr 185 
                  + +agG+  l+++ll g++++  +++ al  l ++++ rk + 
  KOO25408.1 2324 ISKAGGMPPLIRLLLVGHPDVHRDVAGALGALASNDDLRKAIA 2366
                  5689*****************************9999999875 PP

  == domain 9  score: -3.4 bits;  conditional E-value: 4
    RICTOR_N  109 vvralvavaehedDrlrricletLaElllldpelvveagGlr.........vllnalldgsselaesllvallylLdspetrkylrk 186 
                  v++ lv +  ++++ +r+ + e L++++  + +   + +G +         +l + l dg  e++e  l  ll + d+ + + ++++
  KOO25408.1 2549 VTNELVKLLSSSKEAVRQRAAEALTDMAAGEGSHTKHRQGNQnangvplvnLLKDGLKDGRVEAQEYALRSLLAISDNSAKEAIVEA 2635
                  566677777777777777777777777777777777777777777776666777777778888888888888888888777766665 PP

  == domain 10  score: 3.2 bits;  conditional E-value: 0.039
    RICTOR_N  143 vveagGlrvllnalldgsselaesllvallyl.Ldspetrkylrkgldleillspftd..........slekekkkesneeklqnsakaisslLks 227 
                  +++ag+++++++ l+d s   +e  + al ++ Ld+p+t   + ++  ++ l+    d          + ++ +++++ + k+++++ka++ +L+ 
  KOO25408.1 2716 IAQAGAVSAFVRWLADPSLGPSEVAARALAEIaLDNPDTQTQIAEEGAISPLV----DmvgawkeavaKAKQADEAQAANAKMRAAKKALAAALRV 2807
                  68999***********888888888888888669*****99777765555555....5444577666533334444445589************95 PP

  == domain 11  score: 4.1 bits;  conditional E-value: 0.021
    RICTOR_N  142 lvveagGlrvllnalldgsselaesllvallylLdspetrkylrkgldleillspftd 199 
                   +++ag++  l+n+l+ +s e +e  ++all+l + +   +    ++ +++l++++++
  KOO25408.1 2910 AIAKAGAIAPLVNLLASESVETQENAVAALLHLASQDVASR----NTAVKQLVAVLSQ 2963
                  57899***************************988765544....4556666666666 PP

>> Cnd1  non-SMC mitotic condensation complex subunit 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.3   0.0      0.17   1.5e+02      59      90 ..      41      72 ..      29     123 .. 0.75
   2 ?    1.5   0.1      0.31   2.8e+02      49     144 ..     367     467 ..     346     491 .. 0.71
   3 !    8.5   0.0    0.0021       1.9      23      89 ..     539     568 ..     501     603 .. 0.66
   4 ?    4.7   0.1     0.031        28      22      97 ..     911     991 ..     904    1034 .. 0.80
   5 ?    1.2   0.0      0.37   3.3e+02      49      90 ..    1036    1077 ..    1021    1091 .. 0.84
   6 ?   -1.1   0.0       1.9   1.7e+03      25      88 ..    1533    1600 ..    1526    1611 .. 0.77
   7 ?    2.0   0.0      0.21   1.9e+02      25     106 ..    1712    1797 ..    1710    1901 .. 0.75
   8 ?   -2.5   0.0         5   4.5e+03      41      90 ..    1929    1982 ..    1925    2013 .. 0.66
   9 ?    0.8   0.0       0.5   4.5e+02      28      90 ..    2042    2110 ..    2037    2119 .. 0.76
  10 ?   -0.7   0.1       1.4   1.3e+03      40      89 ..    2207    2259 ..    2200    2321 .. 0.80
  11 ?   -3.4   0.0       9.6   8.6e+03      55     125 ..    2430    2496 ..    2414    2508 .. 0.52
  12 ?    4.3   0.0     0.042        38      59     139 ..    2549    2634 ..    2530    2642 .. 0.77
  13 ?   -0.0   0.0       0.9   8.1e+02      38     105 ..    2696    2768 ..    2681    2791 .. 0.79
  14 !    7.2   0.4    0.0054       4.8      62     156 ..    2877    2972 ..    2853    2998 .. 0.48
  15 ?    6.1   0.0     0.012        10      23      88 ..    3171    3242 ..    3166    3270 .. 0.92

  Alignments for each domain:
  == domain 1  score: 2.3 bits;  conditional E-value: 0.17
        Cnd1 59 flselaklleDenprVvanalaalteisekse 90
                ++++l k +++ ++++ + + aal+ei+ ++ 
  KOO25408.1 41 LINKLVKRIKEGDAEIKEFSAAALKEIAGMDH 72
                799999**********************9943 PP

  == domain 2  score: 1.5 bits;  conditional E-value: 0.31
        Cnd1  49 ilndmvkekgflselakll.eDenprVvanalaalteisekse...naiynllpdiisklsd....alnecsewgqitilefLlsyipkdkqeaeslve 139
                  ++ +v + g +s la l+   +n+rV a +  a+  +se +    +++ n    +i+ l++    +   ++e + + il++ l+ ++++ q a++l+e
  KOO25408.1 367 ENQRFVVDLGGISYLAGLIkLSSNTRVKAEVAGAFWALSEDAAikcTIAENA---TIFPLVQllavDDARATEHAACAILSLGLDNKKNQIQIAQMLIE 462
                 4555788888889999999778899999999999999999953211222332...33333332334666799999999999999999999998888888 PP

        Cnd1 140 klcpr 144
                  l++ 
  KOO25408.1 463 LLTNG 467
                 88764 PP

  == domain 3  score: 8.5 bits;  conditional E-value: 0.0021
        Cnd1  23 vepLrkrLkDedpyVRktaaivvakLilndmvkekgflselaklleDenprVvanalaalteiseks 89 
                 ++pL ++L D  p ++k+aa ++akL                                     ++++
  KOO25408.1 539 ISPLIACLGDMRPKIQKQAAAAIAKL-------------------------------------ARNN 568
                 45666666666666666666666666.....................................3332 PP

  == domain 4  score: 4.7 bits;  conditional E-value: 0.031
        Cnd1  22 lvepLrkrLkDedpyVRktaaivvakL.....ilndmvkekgflselaklleDenprVvanalaalteiseksenaiynll 97 
                 ++++L + L+D+ +  +++aa ++a+L      +++ + + + +  l+++l+ ++++  +na+  ++e+ ++s+n+  ++ 
  KOO25408.1 911 IIKKLVHMLQDPGAGGQEQAAAALANLareseNNRQSIVDANGITPLLEILDASSAKAKENAVDTIKELCRNSKNNQAQVA 991
                 678899999999999999999999999988877777888888899999999999999999999999999999777665554 PP

  == domain 5  score: 1.2 bits;  conditional E-value: 0.37
        Cnd1   49 ilndmvkekgflselaklleDenprVvanalaalteisekse 90  
                  +++d + e g +  l ++l  ++p  +ana  al +++++ +
  KOO25408.1 1036 MNQDAITEAGAIGPLVSMLIAPSPVMQANAAGALANLARNHP 1077
                  7899*******************************9998854 PP

  == domain 6  score: -1.1 bits;  conditional E-value: 1.9
        Cnd1   25 pLrkrLkDedpyVRktaaivvakL..ilnd..mvkekgflselaklleDenprVvanalaalteisek 88  
                  pL ++++  ++  +++aa ++ +L  ++++      kg + el +ll+  +pr +++a a l+++s+ 
  KOO25408.1 1533 PLLTCIRTGSQLGQEHAARAIWHLaaLTEGqgELVAKGAIPELVQLLKTGSPRAQEMAAAGLMDLSQG 1600
                  55555555566666778888888876544423477899*************************99975 PP

  == domain 7  score: 2.0 bits;  conditional E-value: 0.21
        Cnd1   25 pLrkrLkDedpyVRktaaivvakL....ilndmvkekgflselaklleDenprVvanalaalteiseksenaiynllpdiisklsd 106 
                  pL ++L+   ++ R++aa ++ +L     +++++ + + +s l ++l+D  ++  + a +al  ++ ++ ++ +++ + ++  l +
  KOO25408.1 1712 PLLNQLTNGTMQARENAAGALWHLalevSNQNLIAKCNGISPLVNILDDGTEQAHKHAENALARLAFQNIDNQISIAKYCVALLGN 1797
                  56667777777889999999999988844445666666899999999999999999999999888888655555555555555554 PP

  == domain 8  score: -2.5 bits;  conditional E-value: 5
        Cnd1   41 aaivvakL.ilnd...mvkekgflselaklleDenprVvanalaalteisekse 90  
                  aa v+++L  l++    +   + +  l  +l+   p  ++ a a+l++i++ s 
  KOO25408.1 1929 AAAVLSHLsTLEEeckAITAANGIRPLVVMLTSGTPVAQTHAAAVLSDIARLSV 1982
                  788888888555513334455578888889999999999999999999988742 PP

  == domain 9  score: 0.8 bits;  conditional E-value: 0.5
        Cnd1   28 krLkDedpyVRktaaivvakL.....ilndmvkekgflselaklleDen.prVvanalaalteisekse 90  
                  + L+ ed    k aa ++a L      ++d v++++ +s+l  ll+ +  ++V+a a aal  ++e ++
  KOO25408.1 2042 ALLNEEDDLCLKKAAGGLAALcqgsmENQDAVEKNKGISKLVGLLKPPYtAEVSAAAAAALAVLAEGNS 2110
                  566667777777777777777776646778999999*********8775489***99999998888754 PP

  == domain 10  score: -0.7 bits;  conditional E-value: 1.4
        Cnd1   40 taaivvakLilndmvkekgflselaklleDenprVvanalaalteisek...s 89  
                  +aa ++a L l +m  e  + +++  ll  e+p+  a a  a++ +++    +
  KOO25408.1 2207 QAAGALAALALDNMKNEFSIAEMMVALLGSEDPKACAKAARAISRLARThvsN 2259
                  788899999999999999999************99999999999998886533 PP

  == domain 11  score: -3.4 bits;  conditional E-value: 9.6
        Cnd1   55 kekgflselaklleDenprVvanalaalteiseksenaiynllpdiisklsdalnecsewgqitilefLls 125 
                   + g +  l  ll+   ++  + a +al+ +  ++ ++ + ++ + +  l+    + s  gq ++ ++L +
  KOO25408.1 2430 AQAGGIPLLVALLDGATDEAKEEAANALQTLVLQNASNQLAIVNEAVAMLK----TGSPMGQEHVTKLLRN 2496
                  455556666666655555555566666666665554444444444444444....3345555555555444 PP

  == domain 12  score: 4.3 bits;  conditional E-value: 0.042
        Cnd1   59 flselaklleDenprVvanalaalteisekse........naiynllpdiisklsdalnecsewgqitilefLlsyipkdkqeaeslve 139 
                  + +el kll+ +++ V++ a  alt+++  ++        n    +   +++ l+d l++   ++q + l++Ll   +++++  e +ve
  KOO25408.1 2549 VTNELVKLLSSSKEAVRQRAAEALTDMAAGEGshtkhrqgN-QNANGVPLVNLLKDGLKDGRVEAQEYALRSLLAISDNSAK--EAIVE 2634
                  77899**********************99844334433212.22233557899999999999999*******9999999999..77777 PP

  == domain 13  score: -0.0 bits;  conditional E-value: 0.9
        Cnd1   38 RktaaivvakL....ilndmvkekgflselaklleDenprVvanalaalteiseksenaiynllpd.iiskls 105 
                  + +aa  +a+L      +  + + g +s + + l D++   ++ a  al ei+  ++++  ++  +  is l+
  KOO25408.1 2696 KAHAAASLAQLarraSAASQIAQAGAVSAFVRWLADPSLGPSEVAARALAEIALDNPDTQTQIAEEgAISPLV 2768
                  678999999998776566689999*****************************99888887777553555555 PP

  == domain 14  score: 7.2 bits;  conditional E-value: 0.0054
        Cnd1   62 elaklleDenprVvanalaalteisek.senaiynllpdiisklsdalnecsewgqitilefLlsyipkdkqeaeslveklcprlqhansavvlaa 156 
                   l +ll+ e++   + a aal+ ++++ +en+i   +   i  l++ l + s ++q + + +Ll+  ++d    ++ v++l++ l++     +++a
  KOO25408.1 2877 PLVQLLSSESAVTAQYAAAALQSLAREhAENQIAIAKAGAIAPLVNLLASESVETQENAVAALLHLASQDVASRNTAVKQLVAVLSQRSATAQMKA 2972
                  444444444444444444444444444333333333334444444444444444444444444444444444444444444444444333333333 PP

  == domain 15  score: 6.1 bits;  conditional E-value: 0.012
        Cnd1   23 vepLrkrLkDedpyVRktaaivvakL......ilndmvkekgflselaklleDenprVvanalaalteisek 88  
                  ++p+ k L+D+    Rk aa ++  L      +  +++ e g +  l  +l++++++ +  a+aal  i + 
  KOO25408.1 3171 IPPIVKLLSDSRLITRKYAASALWGLsdgkdgVYDKYIAEAGAIPPLIAMLQENEEETRGFAVAALLCICRD 3242
                  68999***********************99999999****************************99877655 PP

>> DUF5578  Family of unknown function (DUF5578)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.4   0.1      0.38   3.4e+02     190     259 ..      88     163 ..      84     177 .. 0.65
   2 ?   -0.5   0.0      0.76   6.8e+02     221     252 ..     247     278 ..     207     331 .. 0.64
   3 !   11.5   0.1   0.00016      0.14     156     257 ..     463     574 ..     413     590 .. 0.83
   4 ?    4.9   0.1     0.016        15     141     252 ..     868     982 ..     812    1003 .. 0.80
   5 ?   -2.7   0.2       3.6   3.2e+03     189     218 ..    1270    1299 ..    1231    1320 .. 0.53
   6 ?   -1.1   0.0       1.1   9.8e+02      98     133 ..    1352    1388 ..    1336    1429 .. 0.55
   7 ?   -2.3   0.0       2.6   2.3e+03     188     209 ..    1573    1594 ..    1503    1604 .. 0.69
   8 !   16.7   0.0   4.2e-06    0.0037     101     266 ..    1706    1874 ..    1695    1876 .. 0.82
   9 ?    3.9   0.7     0.033        29     158     257 ..    1875    1985 ..    1872    2003 .. 0.77
  10 ?    2.5   0.1     0.089        80     190     256 ..    2193    2259 ..    2160    2277 .. 0.71
  11 !    6.7   0.2    0.0046       4.1     190     252 ..    2438    2500 ..    2431    2513 .. 0.75
  12 !   11.9   0.1   0.00012      0.11     155     250 ..    2477    2576 ..    2472    2583 .. 0.86
  13 !   10.6   3.0    0.0003      0.27     189     267 ..    2877    2962 ..    2828    2963 .. 0.72
  14 !    9.7   3.4   0.00056       0.5     190     267 ..    2878    2962 ..    2869    3028 .. 0.64
  15 ?   -3.4   0.0       5.6   5.1e+03     102     179 ..    3126    3200 ..    3115    3261 .. 0.68

  Alignments for each domain:
  == domain 1  score: 0.4 bits;  conditional E-value: 0.38
     DUF5578 190 liallacsspkaqqlalqtlrvvqeivkeakpsive.....pllelLkslhlevqyeaielikelm.stevraall 259
                 l+ ll+c + ++q  a+++l  +  +  e +++iv      +l++lLk+   +vq ea   + +l   +  ++++l
  KOO25408.1  88 LVRLLSCGAANTQCSAASALAGIAVMKAEYQKQIVAagggpALVALLKTGSAKVQEEAAAALATLRvDVSFQSEIL 163
                 5667777777777777777776666666666666652223257888888888888888888877763335555555 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 0.76
     DUF5578 221 psivepllelLkslhlevqyeaielikelmst 252
                    v pll+lL+ +++e q ea   + e+++ 
  KOO25408.1 247 LGGVAPLLALLNGMDVESQVEAAAALAEMARD 278
                 44566777777777777777776666666543 PP

  == domain 3  score: 11.5 bits;  conditional E-value: 0.00016
     DUF5578 156 lakskseetqeeaqklleslaegnPkyqkqvyk.....gliallacsspkaqqlalqtlrvv...qeivkeakpsivepllelLkslhlevqyeaieli 246
                 l +  se+tq++a k l+ l++ nP+ ++ + k     +l+ ll+ +    + +al +l ++   ++++  a++  ++pl++ L  +  ++q++a   i
  KOO25408.1 463 LLTNGSEATQDRATKALWGLVNQNPSAHDAIAKagdpaALVELLKRDYADVKDYALWSLSLAisrENQMTVAESGGISPLIACLGDMRPKIQKQAAAAI 561
                 3456799**********************999844444599****999999**99988876511234566778999*********************** PP

     DUF5578 247 kelmst..evraa 257
                  +l++   + r++
  KOO25408.1 562 AKLARNndDTRSQ 574
                 9999652244544 PP

  == domain 4  score: 4.9 bits;  conditional E-value: 0.016
     DUF5578 141 EliCEsygvravaeclakskseetqeeaqklleslaegnPkyqkqvykgliallacsspkaqqlalqtlrvvqeivkeakpsive.....pllelLksl 234
                  +i Es g+  +  +l  +++ +++e+a+  l  l+  n + + q+ k l+ +l+     +q  a+ +l  + +  ++ ++siv+     plle+L   
  KOO25408.1 868 HMITESGGIGFLVMLLG-CTNPKSREHAEGALVRLSIENAN-RVQIIKKLVHMLQDPGAGGQEQAAAALANLARESENNRQSIVDangitPLLEILDAS 964
                 57778877777766655.55667788888888888888865.779999999999999999999999999999999999988888644444799999999 PP

     DUF5578 235 hlevqyeaielikelmst 252
                   + + +a++ ikel + 
  KOO25408.1 965 SAKAKENAVDTIKELCRN 982
                 9999999**999999865 PP

  == domain 5  score: -2.7 bits;  conditional E-value: 3.6
     DUF5578  189 gliallacsspkaqqlalqtlrvvqeivke 218 
                   li+l++ ss +aqq a+ +l  + +  ++
  KOO25408.1 1270 PLIGLVKKSSAEAQQHAACALWHLASLAEN 1299
                  277777777777777777666555544433 PP

  == domain 6  score: -1.1 bits;  conditional E-value: 1.1
     DUF5578   98 eFlEiGGvltlleilglkqlkeedkaealkl.lqlva 133 
                  e  E GGvl l+++l++ +   e+ a al   l lv+
  KOO25408.1 1352 EIAEKGGVLPLVKLLSKGTPGAEQMAAALLAeLALVS 1388
                  6667788888887777666555554444322133333 PP

  == domain 7  score: -2.3 bits;  conditional E-value: 2.6
     DUF5578  188 kgliallacsspkaqqlalqtl 209 
                    l+ ll++ sp+aq +a+  l
  KOO25408.1 1573 PELVQLLKTGSPRAQEMAAAGL 1594
                  4678888888888888887665 PP

  == domain 8  score: 16.7 bits;  conditional E-value: 4.2e-06
     DUF5578  101 EiGGvltlleilglkqlkeedk.aealkllq.lvanaGrkyKEliCEsygvravaeclakskseetqeeaqklleslaegnPkyqkqvykglialla 195 
                  + GGvl ll+ l+  +++ ++  a al  l   v+n     ++li  + g+  + ++l    +e+++++a++ l  la  n + q  + k  +all 
  KOO25408.1 1706 DAGGVLPLLNQLTNGTMQARENaAGALWHLAlEVSN-----QNLIAKCNGISPLVNILDDG-TEQAHKHAENALARLAFQNIDNQISIAKYCVALLG 1796
                  689****99999887777655414455544414555.....68***************886.688999***************************** PP

     DUF5578  196 csspkaqqlalqtlrvvqeivkeakpsi.....vepllelLkslhlevqyeaielikelmst..evraallkglvalL 266 
                   +   aq+  ++ lr +  + + ++  i     ++pl++lL++  +ev+ ea   +++l+      + a+ +glv+l+
  KOO25408.1 1797 NQNTGAQRRGARVLRDLAAANPGSPVLIvnagaISPLVNLLTTGVSEVKEEAAGALSTLAFNspSTQLAIASGLVNLV 1874
                  ***************999998887655511111679**********************99442367888999999986 PP

  == domain 9  score: 3.9 bits;  conditional E-value: 0.033
     DUF5578  158 kskseetqeeaqklleslaegnPkyqkqvykgliallacs.......spkaqqlalqtlrvvqeivkeak....psivepllelLkslhlevqyeai 243 
                   s s+e+qe++ +ll  la+   +       g i  l  +       s kaq la+  l  +++  +e k     + + pl+ +L+s     q++a 
  KOO25408.1 1875 GSGSAEAQEQVTQLLLRLAHDQANCVAIAKAGAIQRLVIQlkgggrtSIKAQELAAAVLSHLSTLEEECKaitaANGIRPLVVMLTSGTPVAQTHAA 1971
                  58899**************999998887777766666554444456699*****986666555544443321147889***********999***** PP

     DUF5578  244 elikelmstevraa 257 
                   +++++++  vr++
  KOO25408.1 1972 AVLSDIARLSVRNQ 1985
                  *****999988764 PP

  == domain 10  score: 2.5 bits;  conditional E-value: 0.089
     DUF5578  190 liallacsspkaqqlalqtlrvvqeivkeakpsivepllelLkslhlevqyeaielikelmstevra 256 
                  l+ +l   s +aq  a+ +l  +     + + si e++++lL s + +  ++a + i+ l++t+v++
  KOO25408.1 2193 LVVVLGQGSLRAQDQAAGALAALALDNMKNEFSIAEMMVALLGSEDPKACAKAARAISRLARTHVSN 2259
                  5556666677777777777777777777777777777777777777777777777777777666654 PP

  == domain 11  score: 6.7 bits;  conditional E-value: 0.0046
     DUF5578  190 liallacsspkaqqlalqtlrvvqeivkeakpsivepllelLkslhlevqyeaielikelmst 252 
                  l+all  ++ +a+  a+++l+++  +  + + +iv+  +++Lk+     q ++++l+++l++ 
  KOO25408.1 2438 LVALLDGATDEAKEEAANALQTLVLQNASNQLAIVNEAVAMLKTGSPMGQEHVTKLLRNLAQD 2500
                  677788888888888888888888888888888888888888888888888888888887764 PP

  == domain 12  score: 11.9 bits;  conditional E-value: 0.00012
     DUF5578  155 clakskseetqeeaqklleslaegnPkyqkqvykg.....liallacsspkaqqlalqtlrvvqeivkeakpsivepllelLkslhlevqyeaieli 246 
                   + k+ s   qe++ kll++la+ +P+ ++ + k+     l+  l+c s +a  +a++ l ++  + ++ + ++ + l++lL+s +  v++ a e +
  KOO25408.1 2477 AMLKTGSPMGQEHVTKLLRNLAQ-DPENRSAIAKAgavpeLVRQLECGSERAMGMAASGLALIALKSDKDRATVTNELVKLLSSSKEAVRQRAAEAL 2572
                  56678889999********9998.477777766633344499*****************************************************99 PP

     DUF5578  247 kelm 250 
                   +++
  KOO25408.1 2573 TDMA 2576
                  9986 PP

  == domain 13  score: 10.6 bits;  conditional E-value: 0.0003
     DUF5578  189 gliallacsspkaqqlalqtlrvvqe.....ivkeakpsivepllelLkslhlevqyeaielikelmstev..raallkglvalLk 267 
                   l+ ll+++s  + q+a+ +l+++ +     ++  ak   + pl++lL+s  +e q +a+  + +l+s++v  r++ +k+lva+L+
  KOO25408.1 2877 PLVQLLSSESAVTAQYAAAALQSLARehaenQIAIAKAGAIAPLVNLLASESVETQENAVAALLHLASQDVasRNTAVKQLVAVLS 2962
                  488899999999999998888877651111145556777899***************************99334678999999996 PP

  == domain 14  score: 9.7 bits;  conditional E-value: 0.00056
     DUF5578  190 liallacsspkaqqlalqtlrvvqe.....ivkeakpsivepllelLkslhlevqyeaielikelmstev..raallkglvalLk 267 
                  l+ ll+++s  + q+a+ +l+++ +     ++  ak   + pl++lL+s  +e q +a+  + +l+s++v  r++ +k+lva+L+
  KOO25408.1 2878 LVQLLSSESAVTAQYAAAALQSLARehaenQIAIAKAGAIAPLVNLLASESVETQENAVAALLHLASQDVasRNTAVKQLVAVLS 2962
                  4555666666666665555554433000003334445556666666666666666666666666666666223445666666654 PP

  == domain 15  score: -3.4 bits;  conditional E-value: 5.6
     DUF5578  102 iGGvltlleilglkqlkeedkaealkllqlvanaGrkyKEliCEsygvravaeclakskseetqeeaqklleslaegn 179 
                   G +  l+eil  k ++   +++a  +l+ +a +    K  i  + g+  + ++l+ s+   t+++a + l+ l+ g 
  KOO25408.1 3126 AGAIPLLVEILYSKFSEC--REHAAGVLSALARTQGGNKKAIFQARGIPPIVKLLSDSRL-ITRKYAASALWGLSDGK 3200
                  566667778877665443..4556677888888877788888888888888888888864.67777777777777764 PP

>> Adaptin_N  Adaptin N terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.0       1.4   1.2e+03     333     417 ..      34     123 ..      31     152 .. 0.66
   2 ?   -2.7   0.1       1.8   1.6e+03     117     179 ..     128     193 ..      97     217 .. 0.70
   3 ?    4.4   0.0     0.013        11     358     417 ..     436     495 ..     423     519 .. 0.89
   4 !    6.0   0.0    0.0042       3.8     119     151 ..     542     573 ..     539     590 .. 0.86
   5 !    6.9   0.1    0.0022         2     338     431 ..     909    1011 ..     900    1021 .. 0.75
   6 ?   -2.1   0.0       1.2   1.1e+03     133     182 ..    1378    1428 ..    1360    1440 .. 0.82
   7 ?    4.1   0.1     0.015        14     332     424 ..    1825    1916 ..    1822    2014 .. 0.61
   8 ?   -1.5   0.0      0.79   7.1e+02     213     270 ..    2269    2325 ..    2209    2340 .. 0.67
   9 !    8.1   0.2   0.00094      0.84     131     298 ..    2450    2627 ..    2409    2644 .. 0.47
  10 !   10.0   0.8   0.00026      0.23     119     239 ..    2878    3002 ..    2875    3070 .. 0.73
  11 ?   -2.6   0.0       1.6   1.4e+03      88     112 ..    3221    3245 ..    3171    3252 .. 0.54

  Alignments for each domain:
  == domain 1  score: -2.3 bits;  conditional E-value: 1.4
                 XTTTHHHHHHHHHHHTTSSXXHHHHHHHHHHHHHHHHHS......CCHHHHHHHHHHHHHTTXXHHHHHHHHHHHHHHHHHSTTTSTTCHH CS
   Adaptin_N 333 desNvkeivkeLkkyvkevadedfksklvkaIgrlaekf......atdaewvldvllellslsgesvkdeivevirdliqkvpelheeiie 417
                 +++++ e++++L k +ke  d ++k+  + a+ ++a         + + +  ++ l++lls     +++++++++  + ++++e ++ i++
  KOO25408.1  34 SAESLPELINKLVKRIKEG-DAEIKEFSAAALKEIAGMDhgshaaELSRAGAIEPLVRLLSCGAANTQCSAASALAGIAVMKAEYQKQIVA 123
                 5677778888888888555.66655555555555555444446556666667777777777777777777777777777777777666665 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 1.8
                 HHHHHHHT-SSHHHHHHHHHHHHHCCCC...CHHCCCCCHHHHHHHCTT-SSHHHHHHHHHHHHHH CS
   Adaptin_N 117 paikkllkdrspyvrkkAalailklykk...dpdllrkqlveeikellsdkdpgvvlaAvalleei 179
                 pa+ +llk  s+ v+ +Aa a+++l      ++++lr   ++ ++ lls  + + ++aA ++    
  KOO25408.1 128 PALVALLKTGSAKVQEEAAAALATLRVDvsfQSEILRAGAIPALVGLLSNGSAIAQAAAAQATANA 193
                 577888899999999888888777743333366666555888888888888888888888776665 PP

  == domain 3  score: 4.4 bits;  conditional E-value: 0.013
                 HHHHHHHHHHHHHSCCHHHHHHHHHHHHHTTXXHHHHHHHHHHHHHHHHHSTTTSTTCHH CS
   Adaptin_N 358 sklvkaIgrlaekfatdaewvldvllellslsgesvkdeivevirdliqkvpelheeiie 417
                 + ++ aI +l+   ++++ ++ ++l+ell++ +e ++d + +++  l++++p+ h+ i++
  KOO25408.1 436 EHAACAILSLGLDNKKNQIQIAQMLIELLTNGSEATQDRATKALWGLVNQNPSAHDAIAK 495
                 567778999999999999*************************************98865 PP

  == domain 4  score: 6.0 bits;  conditional E-value: 0.0042
                 HHHHHT-SSHHHHHHHHHHHHHCCCCCHHCCCC CS
   Adaptin_N 119 ikkllkdrspyvrkkAalailklykkdpdllrk 151
                 + ++l d++p ++k+Aa ai+kl +++ d  r 
  KOO25408.1 542 LIACLGDMRPKIQKQAAAAIAKLARNNDDT-RS 573
                 678***********************9987.33 PP

  == domain 5  score: 6.9 bits;  conditional E-value: 0.0022
                  HHHHHHHHHHTTSSXXHH..HHHHHHHHHHHHHHHSCCHHHHHHHH.....HHHHHTTXXHHHHHHHHHHHHHHHHHSTTTSTTC.....HHHHCCT CS
   Adaptin_N  338 keivkeLkkyvkevaded..fksklvkaIgrlaekfatdaewvldv.....llellslsgesvkdeivevirdliqkvpelheei.....iekLael 422 
                   +i+k+L   v++++d+     ++++ a+++la  ++++ ++++d      lle+l  s+ ++k+ +v+ i++l ++ +++++ +     i+kL+ +
  KOO25408.1  909 VQIIKKL---VHMLQDPGagGQEQAAAALANLARESENNRQSIVDAngitpLLEILDASSAKAKENAVDTIKELCRNSKNNQAQVaraggIAKLVGV 1002
                  4444444...455566666689999999********888888876444444999999999*******************999887566667777777 PP

                  CCGXXSHHH CS
   Adaptin_N  423 lekieseea 431 
                  l+  +++++
  KOO25408.1 1003 LQGFSVNAL 1011
                  776666655 PP

  == domain 6  score: -2.1 bits;  conditional E-value: 1.2
                  HHHHHHHHCCCCCHHCCCCC.HHHHHHHCTT-SSHHHHHHHHHHHHHHHCC CS
   Adaptin_N  133 kAalailklykkdpdllrkq.lveeikellsdkdpgvvlaAvalleeikkn 182 
                  +A+la l+l++ + d + +   +e  ++lls++++g    A  ll ++ ++
  KOO25408.1 1378 AALLAELALVSRNRDKIANAgCIESATKLLSSTTVGTPEVAARLLAHLAYK 1428
                  578889999999*****99999************99999999888888544 PP

  == domain 7  score: 4.1 bits;  conditional E-value: 0.015
                  XXTTTHHHHHHHHHHHTTSSXXHHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHTTXXHHHHHHHHHHHHHHHHHSTTTSTTC....HHHHCCTCC CS
   Adaptin_N  332 vdesNvkeivkeLkkyvkevadedfksklvkaIgrlaekfatdaewvldvllellslsgesvkdeivevirdliqkvpelheei....iekLaelle 424 
                  v++  ++ +v+ L++ v+e     +k++++ a+++la ++++ +  + ++l++l  + +  +++++ + +++l + +++  +++    i++L+  l+
  KOO25408.1 1825 VNAGAISPLVNLLTTGVSE-----VKEEAAGALSTLAFNSPSTQLAIASGLVNLVGSGSAEAQEQVTQLLLRLAHDQANCVAIAkagaIQRLVIQLK 1916
                  6667777777777777733.....4777888888888888888888888888888877777777777777777777766544333333555554444 PP

  == domain 8  score: -1.5 bits;  conditional E-value: 0.79
                  HHHHCC---SSHHHH..HHHHHHHCGGCG.CSSCHHHHHHHHHCCHCCCCSTHHHCCHH CS
   Adaptin_N  213 iklltrlarqepeerskkellesllnllq.ssnnaVlletvnlivelapknelivlavn 270 
                  i ll rl + + +++  +++ e   +  +  +n aV  e++ +i ++a kne+++ a++
  KOO25408.1 2269 IALLVRLLEANSKDK--SSFGEGAAETAEaDANRAVCREMASAIWSMAAKNEANQIAIS 2325
                  444555555555555..456666666666788899999999999999999997777766 PP

  == domain 9  score: 8.1 bits;  conditional E-value: 0.00094
                  HHHHHHHHHHCCCCCHHCCCCCHHHHHHHCTT-SSHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCHHHHHHCS-HHHHHHHHHHHCC---SSHHHH CS
   Adaptin_N  131 rkkAalailklykkdpdllrkqlveeikellsdkdpgvvlaAvalleeikkndrlllkllpklvrrLcnllteldpwlqvkiiklltrlarqepeer 227 
                  + +Aa a+ +l+ ++++ +    v+e +  l+                                        + +p +q  + kll++la+ ++ ++
  KOO25408.1 2450 KEEAANALQTLVLQNASNQLA-IVNEAVAMLK----------------------------------------TGSPMGQEHVTKLLRNLAQDPENRS 2505
                  333333333333333333211.2344444444........................................5556666666666666666555555 PP

                  .........................................HHHHHHHCGGCGCSSCHHHHHHHHHCC............HCCCCSTHHHCCHHCHH CS
   Adaptin_N  228 .......................................skkellesllnllqssnnaVlletvnliv............elapknelivlavnaLv 273 
                                                         +++ + ++l +ll+ss++aV   ++++++            +  ++n+  v +vn L 
  KOO25408.1 2506 aiakagavpelvrqlecgseramgmaasglalialksdkDRATVTNELVKLLSSSKEAVRQRAAEALTdmaagegshtkhRQGNQNANGVPLVNLLK 2602
                  3333333333333333333333333333333333222211145666666666666666666666666655555444444322222224455666666 PP

                  HHHHSSCCTCHHHHHCHHHHHHHHX CS
   Adaptin_N  274 rllsskdenlryvaLrtllkivkke 298 
                  + l++ +   +  aLr+ll i+ ++
  KOO25408.1 2603 DGLKDGRVEAQEYALRSLLAISDNS 2627
                  6666555556666666666666555 PP

  == domain 10  score: 10.0 bits;  conditional E-value: 0.00026
                  HHHHHT-SSHHHHHHHHHHHHHCCCC...CHHCCCCC.HHHHHHHCTT-SSHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCHHHHHHCS-HHHHHH CS
   Adaptin_N  119 ikkllkdrspyvrkkAalailklykk...dpdllrkq.lveeikellsdkdpgvvlaAvalleeikkndrlllkllpklvrrLcnllteldpwlqvk 211 
                  + +ll+++s++  + Aa a+  l +    ++ ++ k   +  +++ll+++++  + +Ava+l ++  +++      +  v++L  +l++ +  +q+k
  KOO25408.1 2878 LVQLLSSESAVTAQYAAAALQSLAREhaeNQIAIAKAgAIAPLVNLLASESVETQENAVAALLHL-ASQDV--ASRNTAVKQLVAVLSQRSATAQMK 2971
                  66889999999999999999999998544444567777899999999999999999999999999.77777..444555566666666888888888 PP

                  HHHHHCC---SSHHHH.....HHHHHHHCGG CS
   Adaptin_N  212 iiklltrlarqepeersk...kellesllnl 239 
                    + l  la++ +e r+    ++ +e l  l
  KOO25408.1 2972 AAEALAVLAARSEENRKAitaANAIEPLVVL 3002
                  8888888888888777555555555555444 PP

  == domain 11  score: -2.6 bits;  conditional E-value: 1.6
                  CCSSSHHHHHHHHHHHCCC--CCCH CS
   Adaptin_N   88 lkdpnqlirglALrvLssirvpela 112 
                  l+ +++  rg+A+ +L +i+ +++a
  KOO25408.1 3221 LQENEEETRGFAVAALLCICRDKTA 3245
                  4445555555555555555554444 PP

>> EF-hand_1  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.1       3.9   3.5e+03      10      20 ..     643     653 ..     643     658 .. 0.77
   2 !   13.1   0.1     6e-05     0.054       3      28 ..     672     697 ..     670     698 .. 0.89
   3 !   19.3   0.1   6.3e-07   0.00056       2      28 ..     710     736 ..     709     737 .. 0.92

  Alignments for each domain:
  == domain 1  score: -2.0 bits;  conditional E-value: 3.9
                 TTTSSSEEEHH CS
   EF-hand_1  10 DkDgdGkIdfe 20 
                 D Dg+Gk+  +
  KOO25408.1 643 DADGSGKLATN 653
                 99*****8655 PP

  == domain 2  score: 13.1 bits;  conditional E-value: 6e-05
                 HHHHHHHTTTSSSEEEHHHHHHHHHH CS
   EF-hand_1   3 keiFrefDkDgdGkIdfeEfkellkk 28 
                  ++F+  D D +G Id+ Ef++ +++
  KOO25408.1 672 INMFQRWDEDSNGIIDRFEFRRSVRA 697
                 68*******************97765 PP

  == domain 3  score: 19.3 bits;  conditional E-value: 6.3e-07
                 HHHHHHHHTTTSSSEEEHHHHHHHHHH CS
   EF-hand_1   2 lkeiFrefDkDgdGkIdfeEfkellkk 28 
                 ++ +F+efD Dg+G +d+ E+ + ++k
  KOO25408.1 710 IDAVFDEFDEDGSGSLDYRELAQQMAK 736
                 799******************998876 PP

>> EF-hand_8  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.0       1.7   1.5e+03      33      53 ..     640     660 ..     627     662 .. 0.85
   2 !   29.4   0.2   5.8e-10   5.2e-07       2      53 ..     683     735 ..     682     736 .. 0.93

  Alignments for each domain:
  == domain 1  score: -0.9 bits;  conditional E-value: 1.7
   EF-hand_8  33 refDtdgdGkisfeEFcvlle 53 
                 +e D dg+Gk+  ++++ +  
  KOO25408.1 640 NEPDADGSGKLATNDYIRFSL 660
                 6679*******9999987765 PP

  == domain 2  score: 29.4 bits;  conditional E-value: 5.8e-10
   EF-hand_8   2 kgkItreelrrilrilglkk.glseeevdilfrefDtdgdGkisfeEFcvlle 53 
                 +g I+r e+rr +r+lg    ++ ++++d++f+efD+dg+G +++ E  + ++
  KOO25408.1 683 NGIIDRFEFRRSVRALGFDAiDFPDSAIDAVFDEFDEDGSGSLDYRELAQQMA 735
                 79*********9999987779**************************999987 PP

>> HEAT_2  HEAT repeats
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.3   0.5     0.028        25       2      59 ..      43     111 ..      42     123 .. 0.70
   2 !    6.9   8.4    0.0091       8.1       2      74 ..     128     220 ..     127     234 .. 0.74
   3 ?    2.7   0.1      0.18   1.6e+02       2      36 ..     251     286 ..     250     290 .. 0.80
   4 !   11.1   2.4   0.00045       0.4       3      87 ..     422     521 ..     420     522 .. 0.79
   5 !    8.4   0.4     0.003       2.7       3      61 ..     501     567 ..     499     578 .. 0.81
   6 ?    4.9   0.4     0.039        35       3      65 ..     797     867 ..     792     872 .. 0.72
   7 ?    3.9   0.7      0.08        72      10      72 ..     884     962 ..     876     977 .. 0.60
   8 ?    5.2   0.2     0.031        28      29      78 ..    1043    1103 ..    1018    1115 .. 0.65
   9 ?    1.4   0.9      0.47   4.2e+02      26      76 ..    1261    1321 ..    1235    1329 .. 0.66
  10 !    6.9   0.3    0.0095       8.5      16      56 ..    1548    1595 ..    1500    1608 .. 0.78
  11 ?    5.0   0.6     0.035        32       2      87 ..    1752    1852 ..    1751    1853 .. 0.72
  12 ?    3.0   0.8      0.15   1.3e+02      30      61 ..    1821    1860 ..    1788    1911 .. 0.65
  13 ?    6.5   5.6     0.012        11       2      88 .]    1995    2103 ..    1994    2103 .. 0.79
  14 !   11.1   1.2   0.00043      0.39      14      60 ..    2207    2254 ..    2195    2283 .. 0.74
  15 ?    6.6   0.4     0.012        10       9      64 ..    2295    2361 ..    2288    2383 .. 0.72
  16 ?   -1.3   5.1       3.4     3e+03      33      56 ..    2435    2458 ..    2401    2513 .. 0.50
  17 !   14.9   1.2   2.9e-05     0.026      19      59 ..    2530    2576 ..    2513    2620 .. 0.70
  18 ?    4.0   3.4     0.074        67       2      60 ..    2682    2749 ..    2652    2784 .. 0.69
  19 ?    4.6   0.8     0.049        44       3      60 ..    2837    2902 ..    2835    2914 .. 0.74
  20 !    9.1  11.3    0.0019       1.7       2      88 .]    2876    2977 ..    2875    3008 .. 0.81
  21 ?    2.2   0.6      0.26   2.3e+02      17      71 ..    3018    3089 ..    3008    3091 .. 0.64
  22 !    9.5   0.1    0.0014       1.2      20      87 ..    3109    3193 ..    3103    3194 .. 0.72
  23 !   13.7   0.1   6.8e-05     0.061       1      87 [.    3129    3236 ..    3129    3238 .. 0.71
  24 ?    6.5   0.1     0.012        11       2      56 ..    3172    3237 ..    3171    3278 .. 0.64
  25 ?   -1.6   0.0       4.1   3.6e+03       3      32 ..    3256    3289 ..    3254    3311 .. 0.65

  Alignments for each domain:
  == domain 1  score: 5.3 bits;  conditional E-value: 0.028
      HEAT_2   2 daLlqalendpdpevrraairaLg...rignp.........ealpaLvellededpavRraaaeaLgaig 59 
                 ++L++++ +  d e++   + aL     +++           a++ Lv+ll++  ++++  aa aL+ i+
  KOO25408.1  43 NKLVKRI-KEGDAEIKEFSAAALKeiaGMDHGshaaelsraGAIEPLVRLLSCGAANTQCSAASALAGIA 111
                 6778888.66777666555555553333333344555555588***********************9775 PP

  == domain 2  score: 6.9 bits;  conditional E-value: 0.0091
      HEAT_2   2 daLlqalendpdpevrraairaLg.........rignp....ealpaLvellededpavRraaaeaLg...........aigdpealpaLkellddd 74 
                 +aL+++l +  + +v+ +a+ aL+         +   +     a+paLv ll++ ++  ++aaa+a +           +i+   a+p+L+ ll + 
  KOO25408.1 128 PALVALL-KTGSAKVQEEAAAALAtlrvdvsfqS---EilraGAIPALVGLLSNGSAIAQAAAAQATAnaaaysahaqrEIAKAGAIPLLLTLLGSG 220
                 6788888.89999999999999997767664430...355548899999999999999999999998755555555544556777888888888665 PP

  == domain 3  score: 2.7 bits;  conditional E-value: 0.18
      HEAT_2   2 daLlqalendpdpevrraairaLgri..gnpealpaL 36 
                 ++Ll++l n  d e + +a+ aL+++  +npe++ a+
  KOO25408.1 251 APLLALL-NGMDVESQVEAAAALAEMarDNPETQSAI 286
                 6899999.999999999******96532678888776 PP

  == domain 4  score: 11.1 bits;  conditional E-value: 0.00045
      HEAT_2   3 aLlqalendpdpevrraairaLg....rignp.ealpaLvellededpavRraaaeaL...........gaigdpealpaLkellddddddvvReaAae 85 
                 +L+q+l+ d   ++ +aa+  L     +++n+ ++ ++L+ell++ ++a++  a +aL            ai+   + +aL ell++ d ++v+  A++
  KOO25408.1 422 PLVQLLAVDDARATEHAACAILSlgldNKKNQiQIAQMLIELLTNGSEATQDRATKALwglvnqnpsahDAIAKAGDPAALVELLKR-DYADVKDYALW 519
                 68999988999999999999999867655555899***********************85555444433255666677999999976.56777999999 PP

      HEAT_2  86 aL 87 
                 +L
  KOO25408.1 520 SL 521
                 98 PP

  == domain 5  score: 8.4 bits;  conditional E-value: 0.003
      HEAT_2   3 aLlqalendpdpevrraairaLg.........rignpealpaLvellededpavRraaaeaLgaigdp 61 
                 aL+++l +    +v+  a+++L          + ++   +  L+ +l d  p ++++aa a+++++++
  KOO25408.1 501 ALVELL-KRDYADVKDYALWSLSlaisrenqmTVAESGGISPLIACLGDMRPKIQKQAAAAIAKLARN 567
                 799999.77889***********8886655444455577************************99753 PP

  == domain 6  score: 4.9 bits;  conditional E-value: 0.039
      HEAT_2   3 aLlqalendpdpevrraairaLg........rignpealpaLvell.ededpavRraaaeaLgaigdpealp 65 
                 aLlq l  +  ++ ++ a+ aL          i+   a+  Lv+ll  +e p+ ++aaa a+ a++d+ea +
  KOO25408.1 797 ALLQTL-GSNTKKFAAIALAALSkdhevtqsAIAKAGAIGPLVSLLdGNEGPEAQEAAAGAILALADHEANR 867
                 556666.5555555555555555766666555566688********77899*********999999988765 PP

  == domain 7  score: 3.9 bits;  conditional E-value: 0.08
      HEAT_2  10 ndpdpevrraairaLgrignp.....ealpaLvellededpavRraaaeaLgaig...........dpealpaLkelld 72 
                  + +p+ r +a  aL r+  +     ++++ Lv +l+d+ +  +++aa aL+ ++           d   +  L+e+ld
  KOO25408.1 884 GCTNPKSREHAEGALVRLSIEnanrvQIIKKLVHMLQDPGAGGQEQAAAALANLAresennrqsivDANGITPLLEILD 962
                 6677777777777777444332244577999999999999999999999999886322222222222334566666664 PP

  == domain 8  score: 5.2 bits;  conditional E-value: 0.031
      HEAT_2   29 npealpaLvellededpavRraaaeaLgaig..dpe.........alpaLkellddddddv 78  
                  +  a+  Lv++l  ++p  +++aa aL+ ++  +p+         a++ L+ l+++ +dd 
  KOO25408.1 1043 EAGAIGPLVSMLIAPSPVMQANAAGALANLArnHPDnqgaitktgAVAPLCVLMKEGSDDT 1103
                  2367999********************8774222332334444448999998888888776 PP

  == domain 9  score: 1.4 bits;  conditional E-value: 0.47
      HEAT_2   26 rignpealpaLvellededpavRraaaeaL..........gaigdpealpaLkellddddd 76  
                   i+  + +p L+ l++ ++++ +++aa aL          +ai + + ++ L  +l+ d++
  KOO25408.1 1261 LIAKSDGIPPLIGLVKKSSAEAQQHAACALwhlaslaenrAAIVEAQGIKPLISMLTADEE 1321
                  56777899*******9999999999998885553333333233345567777777776665 PP

  == domain 10  score: 6.9 bits;  conditional E-value: 0.0095
      HEAT_2   16 vrraairaLg.......rignpealpaLvellededpavRraaaeaLg 56  
                   +++ai+ L+       ++  + a+p Lv+ll++ +p+ +++aa  L 
  KOO25408.1 1548 HAARAIWHLAaltegqgELVAKGAIPELVQLLKTGSPRAQEMAAAGLM 1595
                  456666666665554444444588999999999999999999998885 PP

  == domain 11  score: 5.0 bits;  conditional E-value: 0.035
      HEAT_2    2 daLlqalendpdpevrraairaLg.....rignp.ealpaLvellededpavRraaaeaLgaig...........dpealpaLkellddddddvvRe 81  
                  ++L+++l +d  ++  ++a  aL+     +i+n+ ++ +++v ll ++++  +r  a+ L  ++           +  a++ L  ll++  +++v+e
  KOO25408.1 1752 SPLVNIL-DDGTEQAHKHAENALArlafqNIDNQiSIAKYCVALLGNQNTGAQRRGARVLRDLAaanpgspvlivNAGAISPLVNLLTTG-VSEVKE 1846
                  6788889.77777777777777773335555565888*************99999999997664333334444434669******99876.556699 PP

      HEAT_2   82 aAaeaL 87  
                  +Aa aL
  KOO25408.1 1847 EAAGAL 1852
                  999887 PP

  == domain 12  score: 3.0 bits;  conditional E-value: 0.15
      HEAT_2   30 p......ealpaLvellededpavRraaaeaLg..aigdp 61  
                  p       a+  Lv+ll++  ++v ++aa aL+  a+ +p
  KOO25408.1 1821 PvlivnaGAISPLVNLLTTGVSEVKEEAAGALStlAFNSP 1860
                  1444444789999999999999999999999983333333 PP

  == domain 13  score: 6.5 bits;  conditional E-value: 0.012
      HEAT_2    2 daLlqalendpdpevrraairaLg...........rignpealpaLvellededpavRraaaeaLgai...........gdpealpaLkellddddd 76  
                  ++L+++l++   p+ +++a+ aL             i++   l+aLv ll+ ed    + aa  L+a+             ++ ++ L  ll+ +  
  KOO25408.1 1995 APLVNLLSKENRPKAKAEAAGALLylsagqpatqkAIADAGGLRALVALLNEEDDLCLKKAAGGLAALcqgsmenqdavEKNKGISKLVGLLKPPYT 2091
                  7899***99999***********9887765555433444466***********************98765444332222357789*****9998888 PP

      HEAT_2   77 dvvReaAaeaLa 88  
                  ++v +aAa aLa
  KOO25408.1 2092 AEVSAAAAAALA 2103
                  9******99996 PP

  == domain 14  score: 11.1 bits;  conditional E-value: 0.00043
      HEAT_2   14 pevrraairaLgrignp.ealpaLvellededpavRraaaeaLgaigd 60  
                  ++  + a+ aL +++n+ ++ +++v ll +edp   + aa+a++++++
  KOO25408.1 2207 QAAGALAALALDNMKNEfSIAEMMVALLGSEDPKACAKAARAISRLAR 2254
                  45556677788899999899***********************98853 PP

  == domain 15  score: 6.6 bits;  conditional E-value: 0.012
      HEAT_2    9 endpdpevrraairaLgrignp.........ea..lpaLvellededpavRraaaeaLgaigdpeal 64  
                  e d++ +v r+ + a+ +++ +         +a  +p L++ll   +p+v r +a aLga++++++l
  KOO25408.1 2295 EADANRAVCREMASAIWSMAAKneanqiaisKAggMPPLIRLLLVGHPDVHRDVAGALGALASNDDL 2361
                  56777777777777777443322234444443355********99***************9987654 PP

  == domain 16  score: -1.3 bits;  conditional E-value: 3.4
      HEAT_2   33 lpaLvellededpavRraaaeaLg 56  
                  +p+Lv ll+ +  +  ++aa+aL 
  KOO25408.1 2435 IPLLVALLDGATDEAKEEAANALQ 2458
                  444444444444444444444443 PP

  == domain 17  score: 14.9 bits;  conditional E-value: 2.9e-05
      HEAT_2   19 aairaLg......rignpealpaLvellededpavRraaaeaLgaig 59  
                  +a+  L+      +++  ++ + Lv+ll+++++avR+ aaeaL  ++
  KOO25408.1 2530 MAASGLAlialksDKDRATVTNELVKLLSSSKEAVRQRAAEALTDMA 2576
                  55555554443355566689***********************9874 PP

  == domain 18  score: 4.0 bits;  conditional E-value: 0.074
      HEAT_2    2 daLlqalendpdpevrraairaLg..........rignpealpaLvellededpavRraaaeaLgaigd 60  
                  d+L+ +l +    e +++a+ +L+          +i+   a+ a+v++l d++    + aa+aL++i++
  KOO25408.1 2682 DPLVLLL-STGTAEAKAHAAASLAqlarrasaasQIAQAGAVSAFVRWLADPSLGPSEVAARALAEIAL 2749
                  5566666.6666777888888888444444444444444779999999999998888888888887752 PP

  == domain 19  score: 4.6 bits;  conditional E-value: 0.049
      HEAT_2    3 aLlqalen.dpdpevrraairaLg.......rignpealpaLvellededpavRraaaeaLgaigd 60  
                  +L+++l++ ++ +e   +a++ L+        i+    ++ Lv+ll++e++ + + aa aL  +++
  KOO25408.1 2837 PLVELLKTpSETYEHSTKALWHLAaneenqtAIAKAGGIAPLVQLLSSESAVTAQYAAAALQSLAR 2902
                  577788554666677789999999877664445555669999999999999999999999987765 PP

  == domain 20  score: 9.1 bits;  conditional E-value: 0.0019
      HEAT_2    2 daLlqalendpdpevrraairaLgrignp...........ealpaLvellededpavRraaaeaLgaig......dpealpaLkellddddddvvRe 81  
                  ++L+q+l ++++  +++ a+ aL +++ +            a++ Lv+ll +e+ +++++a+ aL  ++      ++ a++ L + l   +++  + 
  KOO25408.1 2876 APLVQLL-SSESAVTAQYAAAALQSLAREhaenqiaiakaGAIAPLVNLLASESVETQENAVAALLHLAsqdvasRNTAVKQLVAVLS-QRSATAQM 2970
                  7899*99.9999999999999999555554444455555577***********************87762222223669999999885.56777788 PP

      HEAT_2   82 aAaeaLa 88  
                  +AaeaLa
  KOO25408.1 2971 KAAEALA 2977
                  8999986 PP

  == domain 21  score: 2.2 bits;  conditional E-value: 0.26
      HEAT_2   17 rraairaLgrignpea.......lpaLvellededpavRraaa...eaLgaigdpe.......alpaLkell 71  
                  ++a++  L+r g+ ++       +  Lv +l++++++ + +aa   + L+a+g+++       a+p L +ll
  KOO25408.1 3018 AAAVLADLARTGDNKSsivkvggVGPLVAMLSSDSRDAQTHAAcaiWQLAALGTNKtiivdtgAIPPLVALL 3089
                  34555777777776444566666999*****88888877777633367788886553333333777777665 PP

  == domain 22  score: 9.5 bits;  conditional E-value: 0.0014
      HEAT_2   20 airaLg.......rignpealpaLvellededpavRraaaeaLgai.....g......dpealpaLkellddddddvvReaAaeaL 87  
                  a++ L+       +i+n  a+p+Lve+l ++ ++ R++aa  L+a+     g        + +p   +ll +d+  ++R  Aa+aL
  KOO25408.1 3109 ALWHLAssadnktQIANAGAIPLLVEILYSKFSECREHAAGVLSALartqgGnkkaifQARGIPPIVKLL-SDSRLITRKYAASAL 3193
                  56666676777778999999********9999********999988444432333333355688888877.567777788888877 PP

  == domain 23  score: 13.7 bits;  conditional E-value: 6.8e-05
      HEAT_2    1 ldaLlqalendpdpevrraairaLg.....rignp......ealpaLvellededpavRraaaeaL........g....aigdpealpaLkellddd 74  
                  +++L+++l  +++ e r +a+ +L      + gn+      + +p +v+ll+d+   +R+ aa aL        g     i++  a+p L ++l++ 
  KOO25408.1 3129 IPLLVEIL-YSKFSECREHAAGVLSalartQGGNKkaifqaRGIPPIVKLLSDSRLITRKYAASALwglsdgkdGvydkYIAEAGAIPPLIAMLQE- 3223
                  57899999.7777777777777777333433344455555555***********************7555533313433456899*******9986. PP

      HEAT_2   75 dddvvReaAaeaL 87  
                  +++++R  A+ aL
  KOO25408.1 3224 NEEETRGFAVAAL 3236
                  6666677777766 PP

  == domain 24  score: 6.5 bits;  conditional E-value: 0.012
      HEAT_2    2 daLlqalendpdpevrraairaLg............rignpealpaLvellededpavRraaaeaLg 56  
                  ++ +++l +d+   +r+ a+ aL              i++  a+p L+ +l+  ++++R  a+ aL 
  KOO25408.1 3172 PPIVKLL-SDSRLITRKYAASALWglsdgkdgvydkYIAEAGAIPPLIAMLQENEEETRGFAVAALL 3237
                  4556666.66666667777777776666666666655666677888888888777888877777774 PP

  == domain 25  score: -1.6 bits;  conditional E-value: 4.1
      HEAT_2    3 aLlqalendpdpevrraairaLg....rignpea 32  
                   Llqal+  p + +r ++++ L     +  n+++
  KOO25408.1 3256 ELLQALSYGPATRLREQVVEMLTlldvEVPNEDS 3289
                  5888888888888999999988855554445444 PP

>> EF-hand_6  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.9   0.1   0.00041      0.37       3      31 .]     672     699 ..     670     699 .. 0.87
   2 !   19.5   0.1   6.8e-07   0.00061       2      28 ..     710     736 ..     709     745 .. 0.87

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00041
   EF-hand_6   3 reaFklfDkdgdGkidaeElrkalrkalg 31 
                    F+ +D d +G id+ E+r+  r alg
  KOO25408.1 672 INMFQRWDEDSNGIIDRFEFRRSVR-ALG 699
                 678******************9887.665 PP

  == domain 2  score: 19.5 bits;  conditional E-value: 6.8e-07
   EF-hand_6   2 lreaFklfDkdgdGkidaeElrkalrk 28 
                 ++++F++fD dg+G++d+ El + + k
  KOO25408.1 710 IDAVFDEFDEDGSGSLDYRELAQQMAK 736
                 6789*****************999986 PP

>> V-ATPase_H_C  V-ATPase subunit H
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.0       8.6   7.7e+03      44     110 ..      85     150 ..      78     153 .. 0.78
   2 ?   -2.1   0.0       4.5     4e+03      64     112 ..     227     275 ..     208     279 .. 0.79
   3 ?   -1.2   0.0       2.3   2.1e+03      44     104 ..     334     396 ..     320     400 .. 0.81
   4 !   10.1   0.0   0.00075      0.67      37     114 ..     450     526 ..     447     529 .. 0.92
   5 ?   -1.4   0.0       2.7   2.4e+03      44      95 ..     539     589 ..     527     593 .. 0.79
   6 !    6.6   0.1     0.009       8.1      38     113 ..     906     980 ..     900     983 .. 0.84
   7 ?   -2.6   0.0       6.5   5.8e+03      47     106 ..    1050    1108 ..    1035    1116 .. 0.79
   8 ?   -3.2   0.0       9.6   8.6e+03      47      96 ..    1271    1319 ..    1267    1323 .. 0.70
   9 ?   -2.6   0.0       6.2   5.6e+03      44     105 ..    1952    2013 ..    1946    2020 .. 0.68
  10 ?   -0.8   0.0       1.8   1.6e+03      44     108 ..    2037    2101 ..    2027    2106 .. 0.84
  11 ?    2.1   0.0      0.22     2e+02      38      98 ..    2221    2280 ..    2216    2284 .. 0.88
  12 ?   -2.3   0.0       5.2   4.7e+03      82     116 ..    2430    2464 ..    2418    2464 .. 0.81
  13 !    7.7   0.1     0.004       3.6      22     112 ..    2850    2942 ..    2841    2946 .. 0.81

  Alignments for each domain:
  == domain 1  score: -3.0 bits;  conditional E-value: 8.6
  V-ATPase_H_C  44 lkkLiklleeskdktvlavalnDigelvkllpegkkvleklkaKekimellehedeevkyeALkavq 110
                   ++ L++ll +    ++++ a++ ++ ++ +  e +k +   ++   +++ll++  ++v+ eA  a+ 
    KOO25408.1  85 IEPLVRLL-SCGAANTQCSAASALAGIAVMKAEYQKQIVAAGGGPALVALLKTGSAKVQEEAAAALA 150
                   56677788.3555667777788888888888888888888899999999**********99988776 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 4.5
  V-ATPase_H_C  64 lnDigelvkllpegkkvleklkaKekimellehedeevkyeALkavqkl 112
                   +  +g+l+ + +e +++++ l++ + +++ll+  d e + eA  a+ ++
    KOO25408.1 227 AVALGNLAANNREIQDIVAGLGGVAPLLALLNGMDVESQVEAAAALAEM 275
                   3446788889999********************9999999998888776 PP

  == domain 3  score: -1.2 bits;  conditional E-value: 2.3
  V-ATPase_H_C  44 lkkLiklleeskd.ktvlavalnDigelvkllpegkkvleklkaKekimelle.hedeevkye 104
                   l  L++ll++ +d  +vl  a+  i e++++  e ++++ +l++ + +  l++ +++++vk e
    KOO25408.1 334 LTPLCRLLDAGEDaAEVLWCAACAIMEITRNNLENQRFVVDLGGISYLAGLIKlSSNTRVKAE 396
                   66788999877775699999999********99***999999999999999985568888865 PP

  == domain 4  score: 10.1 bits;  conditional E-value: 0.00075
  V-ATPase_H_C  37 eeknfkllkkLiklleeskdktvlavalnDigelvkllpegkkvleklkaKekimellehedeevkyeALkavqkllv 114
                   +++++++ + Li+ll ++ ++ ++  a + +  lv++ p+ ++ ++k +  + ++ell+ + ++vk  AL +++  ++
    KOO25408.1 450 KKNQIQIAQMLIELL-TNGSEATQDRATKALWGLVNQNPSAHDAIAKAGDPAALVELLKRDYADVKDYALWSLSLAIS 526
                   578899*********.5777889999********************************************99988776 PP

  == domain 5  score: -1.4 bits;  conditional E-value: 2.7
  V-ATPase_H_C  44 lkkLiklleeskdktvlavalnDigelvkllpegkkvleklkaKekimelle 95 
                   ++ Li++l  + +++++  a+  i++l+++ ++ ++ ++kl++ + i++ll+
    KOO25408.1 539 ISPLIACL-GDMRPKIQKQAAAAIAKLARNNDDTRSQIAKLGGVKPIIKLLQ 589
                   56677777.3556777888889999999999999999999999999999887 PP

  == domain 6  score: 6.6 bits;  conditional E-value: 0.009
  V-ATPase_H_C  38 eknfkllkkLiklleeskdktvlavalnDigelvkllpegkkvleklkaKekimellehedeevkyeALkavqkll 113
                    ++++++kkL+++l+ +     +  a+  +++l+++ ++ ++ + + ++ + ++e+l+ + ++ k +A  ++++l 
    KOO25408.1 906 ANRVQIIKKLVHMLQ-DPGAGGQEQAAAALANLARESENNRQSIVDANGITPLLEILDASSAKAKENAVDTIKELC 980
                   5779**********4.33345566677789999999999999999***************************9886 PP

  == domain 7  score: -2.6 bits;  conditional E-value: 6.5
  V-ATPase_H_C   47 LiklleeskdktvlavalnDigelvkllpegkkvleklkaKekimellehedeevkyeAL 106 
                    L+++l    ++ ++a a+  +++l++++p+ +  ++k++a + +  l+++  ++ k e+ 
    KOO25408.1 1050 LVSML-IAPSPVMQANAAGALANLARNHPDNQGAITKTGAVAPLCVLMKEGSDDTKDESA 1108
                    55555.24556777778888999*****************99999999998888777765 PP

  == domain 8  score: -3.2 bits;  conditional E-value: 9.6
  V-ATPase_H_C   47 LiklleeskdktvlavalnDigelvkllpegkkvleklkaKekimelleh 96  
                    Li l+++s+ +  ++ a+  + +l++l+++  +++e  ++K  i  l+++
    KOO25408.1 1271 LIGLVKKSSAE-AQQHAACALWHLASLAENRAAIVEAQGIKPLISMLTAD 1319
                    56666544444.34444556888999999999999999999999877765 PP

  == domain 9  score: -2.6 bits;  conditional E-value: 6.2
  V-ATPase_H_C   44 lkkLiklleeskd...ktvlavalnDigelvkllpegkkvleklkaKekimellehedeevkyeA 105 
                    ++ L+ +l+ s +   +t  a +l+Di++l     ++++++++ ++   +  l +++ ++ k eA
    KOO25408.1 1952 IRPLVVMLT-SGTpvaQTHAAAVLSDIARLSVR--NQRQIISENGIAPLVNLLSKENRPKAKAEA 2013
                    566777774.44423346677888899888654..888999888887777666666677777776 PP

  == domain 10  score: -0.8 bits;  conditional E-value: 1.8
  V-ATPase_H_C   44 lkkLiklleeskdktvlavalnDigelvkllpegkkvleklkaKekimellehe.deevkyeALka 108 
                    l++L++ll +++d+ +l  a+  ++ l++   e ++ +ek k+ +k++ ll+ +  +ev+  A  a
    KOO25408.1 2037 LRALVALL-NEEDDLCLKKAAGGLAALCQGSMENQDAVEKNKGISKLVGLLKPPyTAEVSAAAAAA 2101
                    78999***.5899999999*********************99999999999877677777776555 PP

  == domain 11  score: 2.1 bits;  conditional E-value: 0.22
  V-ATPase_H_C   38 eknfkllkkLiklleeskdktvlavalnDigelvkllpegkkvleklkaKekimellehed 98  
                    +++f++ + +++ll  s+d++ +a a+  i++l++ + + ++ +++ ++ + +++lle + 
    KOO25408.1 2221 KNEFSIAEMMVALL-GSEDPKACAKAARAISRLARTHVSNQRAIANAGGIALLVRLLEANS 2280
                    56799999******.699********************99999999999999999998764 PP

  == domain 12  score: -2.3 bits;  conditional E-value: 5.2
  V-ATPase_H_C   82 eklkaKekimellehedeevkyeALkavqkllvqn 116 
                    ++ ++   +++ll+ + +e k eA +a+q+l++qn
    KOO25408.1 2430 AQAGGIPLLVALLDGATDEAKEEAANALQTLVLQN 2464
                    556666678899999999*************9986 PP

  == domain 13  score: 7.7 bits;  conditional E-value: 0.004
  V-ATPase_H_C   22 vHksekFWkenaekleekn...fkllkkLiklleeskdktvlavalnDigelvkllpegkkvleklkaKekimellehedeevkyeALkavqkl 112 
                     H+ +  W+  a++ ++        +  L++ll +s++  + + a+  +++l++++ e +  ++k +a + +++ll++e  e + +A  a+ +l
    KOO25408.1 2850 EHSTKALWHLAANEENQTAiakAGGIAPLVQLL-SSESAVTAQYAAAALQSLAREHAENQIAIAKAGAIAPLVNLLASESVETQENAVAALLHL 2942
                    577777777666655444422245578899***.5888999**********************************************9998766 PP

>> DUF4704  Domain of unknown function (DUF4704)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.3   0.0     0.022        20      11      43 ..     233     287 ..     224     347 .. 0.62
   2 ?   -3.3   0.0       4.7   4.2e+03      63      94 ..     559     590 ..     549     593 .. 0.78
   3 ?    0.0   0.0      0.45     4e+02      65     112 ..     934     980 ..     932     981 .. 0.84
   4 !    8.4   0.2    0.0013       1.1      61     116 ..     972    1027 ..     956    1043 .. 0.85
   5 ?   -4.0   0.0       7.4   6.6e+03      19      35 ..    1122    1138 ..    1115    1148 .. 0.86
   6 ?   -4.3   0.0       9.4   8.5e+03      64     108 ..    1338    1384 ..    1313    1391 .. 0.76
   7 ?   -1.8   0.0       1.7   1.5e+03      64     109 ..    1973    2018 ..    1969    2034 .. 0.80
   8 !    6.7   0.0    0.0043       3.8      16      81 ..    2257    2326 ..    2219    2340 .. 0.64

  Alignments for each domain:
  == domain 1  score: 4.3 bits;  conditional E-value: 0.022
     DUF4704  11 kavvthsihsalesiGGiqvLfPLfsqldlpe......................k 43 
                  a+ +++i+++   +GG+  L+ L++ +d  +                       
  KOO25408.1 233 LAANNREIQDIVAGLGGVAPLLALLNGMDVESqveaaaalaemardnpetqsaiA 287
                 5677899*********************999977776666666644444444440 PP

  == domain 2  score: -3.3 bits;  conditional E-value: 4.7
     DUF4704  63 sliaelleasstnqqqlvqtkGflvlaflLqk 94 
                 + ia+l++++ ++++q+++  G+  + +lLq 
  KOO25408.1 559 AAIAKLARNNDDTRSQIAKLGGVKPIIKLLQP 590
                 66899999999999999999999888888875 PP

  == domain 3  score: 0.0 bits;  conditional E-value: 0.45
     DUF4704  65 iaelleasstnqqqlvqtkGflvlaflLqkvspkhLtrevleallsla 112
                 +a+l+++s++n+q +v  +G++ l ++L+ +s k  +++ ++++++l+
  KOO25408.1 934 LANLARESENNRQSIVDANGITPLLEILDASSAK-AKENAVDTIKELC 980
                 789**************
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